BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase
protein [Candidatus Liberibacter asiaticus str. psy62]
         (465 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040059|gb|ACT56855.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 465

 Score =  963 bits (2489), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/465 (100%), Positives = 465/465 (100%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML
Sbjct: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE
Sbjct: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT
Sbjct: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ
Sbjct: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV
Sbjct: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI
Sbjct: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI
Sbjct: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDKL 465
           PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDKL
Sbjct: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDKL 465


>gi|315122206|ref|YP_004062695.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495608|gb|ADR52207.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 459

 Score =  770 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/458 (80%), Positives = 406/458 (88%), Gaps = 1/458 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+DLGLSPKVVCAV DAGYV PTPIQ+KTIPLVLQRHDVCGIAQTGTGKTASFVLPML
Sbjct: 1   MNFSDLGLSPKVVCAVADAGYVDPTPIQVKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           TILEKGRAR RMPRTLILEPTRELA+QVADNF+KYGKNYNL +ALLIGGIPFE QNKKLE
Sbjct: 61  TILEKGRARARMPRTLILEPTRELASQVADNFQKYGKNYNLNIALLIGGIPFETQNKKLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP IQ+ITSL+PFTRQT
Sbjct: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPDIQSITSLIPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATMT+ELQKVSE FLQNPKRIEVNTP STAETIEHCFVATY QYSKK  L+Q+L++
Sbjct: 181 LLFSATMTEELQKVSEKFLQNPKRIEVNTPYSTAETIEHCFVATYPQYSKKFGLVQKLIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD +KN IIFCNQKK+V +LC +LEKQGFSVCAIHGN+DQRSR+KIL +FKEGTIQLMV
Sbjct: 241 EQDAIKNAIIFCNQKKDVASLCCALEKQGFSVCAIHGNMDQRSRIKILDSFKEGTIQLMV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASDLAARGLDIPDVGHVFNFDVPNR ENYIHRIGRTGRAGR GKAFTLV  ED+K+IDAI
Sbjct: 301 ASDLAARGLDIPDVGHVFNFDVPNRPENYIHRIGRTGRAGRSGKAFTLVTSEDVKYIDAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EKLIEKK+ WL+GDLS+L P  EK+D  Q ++  KN  I   ST    +KK YSSQ S I
Sbjct: 361 EKLIEKKISWLDGDLSTLQPS-EKLDETQRSNTTKNKNIQNTSTKLSHKKKKYSSQTSRI 419

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
           P KE   IS+  QD QE+D  ++GF+GN+PAFMLP+ +
Sbjct: 420 PSKEEVVISQPYQDTQEHDIGAVGFKGNVPAFMLPREK 457


>gi|222086115|ref|YP_002544647.1| ATP dependent RNA helicase protein [Agrobacterium radiobacter K84]
 gi|221723563|gb|ACM26719.1| ATP dependent RNA helicase protein [Agrobacterium radiobacter K84]
          Length = 506

 Score =  575 bits (1483), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 278/422 (65%), Positives = 336/422 (79%), Gaps = 9/422 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS KV+ AV DAGY  PTPIQ   IP  LQR D+CGIAQTGTGKTASFVLPMLT+
Sbjct: 4   FADLGLSQKVLSAVTDAGYTTPTPIQAGAIPFALQRRDICGIAQTGTGKTASFVLPMLTL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L +ALLIGG+ FE Q++KLERG
Sbjct: 64  LEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNIALLIGGVSFEEQDRKLERG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLICTPGR+LDHF RGKLLM+ +EI VIDEADRMLDMGFIP I+ I  L+PFTRQTL 
Sbjct: 124 ADVLICTPGRLLDHFERGKLLMSAVEIFVIDEADRMLDMGFIPDIERIAKLIPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+QK+++ FLQNP+R+EV+ P+STA+T+   FVA++ +  +K A L+ L+++Q
Sbjct: 184 FSATMPAEIQKLADRFLQNPERVEVSAPASTAKTVTQRFVASHGKDYEKRAALRDLIRAQ 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +KN IIFCN+K +V +L  SL++ GFSV A+HG++DQRSR  +L NF++G IQL+VAS
Sbjct: 244 TDLKNAIIFCNRKVDVADLFRSLQRHGFSVGALHGDMDQRSRTTMLQNFRDGQIQLLVAS 303

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+PDVGHVFNFDVP  +E+Y+HRIGRTGRAGR G AFTLV K D KHIDAIEK
Sbjct: 304 DVAARGLDLPDVGHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKHIDAIEK 363

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR----RKKNYSSQKS 418
           LI + V WLNGDLS+L P  E  D   +  +R+  P   K  G +R    R ++ SS KS
Sbjct: 364 LIGEDVQWLNGDLSALPPAEEGGD--DNRSSRRREP---KGKGRERDRSPRGRSASSHKS 418

Query: 419 HI 420
            I
Sbjct: 419 DI 420


>gi|241204840|ref|YP_002975936.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858730|gb|ACS56397.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 521

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 274/440 (62%), Positives = 338/440 (76%), Gaps = 1/440 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS KV+ AV DAGY  PTPIQ   IP  L+R D+CGIAQTGTGKTASFVLPML++
Sbjct: 10  FADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSL 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLERG
Sbjct: 70  LEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERG 129

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I  ++PFTRQTL 
Sbjct: 130 ADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLF 189

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+QK+++ FLQNP+RIEV  P+S AET+   FVA++ +  +K A+L++L+++Q
Sbjct: 190 FSATMPSEIQKLADRFLQNPERIEVAKPASAAETVTQRFVASHGKDYEKRAVLRELVRAQ 249

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +KN I+FCN+KK+V +L  SLE+ GFSV A+HG++DQRSR   L +F++G +QL+VAS
Sbjct: 250 TELKNAIVFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTLQSFRDGNLQLLVAS 309

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIPDV HVFNFDVP  +E+Y+HRIGRTGRAGR G AFTLV K D K +DAIEK
Sbjct: 310 DVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKFVDAIEK 369

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-KKNYSSQKSHIP 421
           LI +KV+WL+GDL+SL PP E    ++           +   G DR  ++N    +    
Sbjct: 370 LIGEKVEWLSGDLTSLPPPAEDSRDSERPRRNGRERGARDGAGRDRAPRENGDKDRGRGR 429

Query: 422 LKESEKISKLQQDIQENDAD 441
              +    K   DIQ+N  D
Sbjct: 430 GNRAAASHKSDNDIQDNGVD 449


>gi|327191069|gb|EGE58122.1| ATP-dependent RNA helicase protein [Rhizobium etli CNPAF512]
          Length = 499

 Score =  568 bits (1465), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 266/384 (69%), Positives = 322/384 (83%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS KV+ AV DAGY  PTPIQ   IP  L+R D+CGIAQTGTGKTASFVLPML++
Sbjct: 4   FADLGLSQKVLSAVADAGYSTPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLERG
Sbjct: 64  LEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL 
Sbjct: 124 ADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+QK+++ FLQNP+R+EV  P+S A+T+   FVA++++  +K A+L++L+++Q
Sbjct: 184 FSATMPPEIQKLADRFLQNPERVEVAKPASAAKTVTQRFVASHSKDYEKRAVLRELVRAQ 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +KN IIFCN+KK+V +L  SLE+ GFSV A+HG++DQRSR  +L NF++G +QL+VAS
Sbjct: 244 GELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTTMLQNFRDGNLQLLVAS 303

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIPDV HVFNFDVP  +E+Y+HRIGRTGRAGR G AFTLV K D K +DAIEK
Sbjct: 304 DVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKFVDAIEK 363

Query: 363 LIEKKVDWLNGDLSSLNPPLEKID 386
           LI +KV+WLNGDL+SL P  E  D
Sbjct: 364 LIGEKVEWLNGDLNSLPPAEEGKD 387


>gi|190891965|ref|YP_001978507.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652]
 gi|190697244|gb|ACE91329.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652]
          Length = 527

 Score =  568 bits (1464), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 266/384 (69%), Positives = 323/384 (84%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS KV+ AV DAGY  PTPIQ   IP  L+R D+CGIAQTGTGKTASFVLPML++
Sbjct: 26  FADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSL 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLERG
Sbjct: 86  LEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERG 145

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL 
Sbjct: 146 ADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLF 205

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+QK+++ FLQNP+RIEV  P+STA+T+   FVA++++  +K A+L++L+++Q
Sbjct: 206 FSATMPPEIQKLADRFLQNPERIEVAKPASTAKTVTQRFVASHSKDYEKRAVLRELVRAQ 265

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +KN IIFCN+KK+V +L  SLE+ GFSV A+HG++DQRSR  +L NF++G +QL+VAS
Sbjct: 266 TELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTTMLQNFRDGNLQLLVAS 325

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIPDV HVFNFDVP  +E+Y+HRIGRTGRAGR G AFTLV K D K +DAIEK
Sbjct: 326 DVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKFVDAIEK 385

Query: 363 LIEKKVDWLNGDLSSLNPPLEKID 386
           LI +KV+WL+GD++SL P  E  D
Sbjct: 386 LIGEKVEWLSGDVNSLPPAEENAD 409


>gi|86357880|ref|YP_469772.1| ATP dependent RNA helicase protein [Rhizobium etli CFN 42]
 gi|86281982|gb|ABC91045.1| ATP dependent RNA helicase protein [Rhizobium etli CFN 42]
          Length = 527

 Score =  568 bits (1463), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 266/384 (69%), Positives = 322/384 (83%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS KV+ AV DAGY  PTPIQ   IP  L+R D+CGIAQTGTGKTASFVLPML++
Sbjct: 26  FADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSL 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLERG
Sbjct: 86  LEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERG 145

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL 
Sbjct: 146 ADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLF 205

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+QK+++ FLQNP+RIEV  P+S A+T+   FVA++++  +K A+L++L+++Q
Sbjct: 206 FSATMPPEIQKLADRFLQNPERIEVARPASAAKTVTQRFVASHSKDYEKRAVLRELVRAQ 265

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +KN IIFCN+KK+V +L  SLE+ GF+V A+HG++DQRSR  +L NF++G +QL+VAS
Sbjct: 266 TELKNAIIFCNRKKDVADLFRSLERHGFNVGALHGDMDQRSRTMMLQNFRDGNLQLLVAS 325

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIPDV HVFNFDVP  +E+Y+HRIGRTGRAGR G AFTLV K D K +DAIEK
Sbjct: 326 DVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKFVDAIEK 385

Query: 363 LIEKKVDWLNGDLSSLNPPLEKID 386
           LI +KV+WLNGDL+SL P  E  D
Sbjct: 386 LIGEKVEWLNGDLNSLPPAEESAD 409


>gi|116252340|ref|YP_768178.1| cold-shock DeaD-box protein A (ATP-dependent RNA helicase)
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256988|emb|CAK08082.1| putative cold-shock DeaD-box protein A (ATP-dependent RNA helicase)
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 521

 Score =  568 bits (1463), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 274/440 (62%), Positives = 337/440 (76%), Gaps = 1/440 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS KV+ AV DAGY  PTPIQ   IP  L+R D+CGIAQTGTGKTASFVLPML++
Sbjct: 10  FADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSL 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLERG
Sbjct: 70  LEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERG 129

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I  ++PFTRQTL 
Sbjct: 130 ADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLF 189

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+QK+++ FLQNP+RIEV  P+S A T+   FVA++ +  +K A+L++L+++Q
Sbjct: 190 FSATMPSEIQKLADRFLQNPERIEVAKPASAAATVTQRFVASHGKDYEKRAVLRELVRAQ 249

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +KN IIFCN+KK+V +L  SLE+ GFSV A+HG++DQRSR   L +F++G +QL+VAS
Sbjct: 250 TELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTLQSFRDGNLQLLVAS 309

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIPDV HVFNFDVP  +E+Y+HRIGRTGRAGR G AFTLV K D K +DAIEK
Sbjct: 310 DVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKFVDAIEK 369

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-KKNYSSQKSHIP 421
           LI +KV+WL+GDL+SL PP E    ++           +   G DR  ++N    +    
Sbjct: 370 LIGQKVEWLSGDLTSLPPPAEDSRDSERPRRNSRERGARDGAGRDRAPRENGDKDRGRGR 429

Query: 422 LKESEKISKLQQDIQENDAD 441
              +    K   DIQ+N  D
Sbjct: 430 GNRAAASHKSDIDIQDNGVD 449


>gi|218674642|ref|ZP_03524311.1| DEAD/DEAH box helicase domain protein [Rhizobium etli GR56]
          Length = 420

 Score =  565 bits (1456), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 264/384 (68%), Positives = 322/384 (83%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS KV+ AV DAGY  PTPIQ   IP  L+R D+CGIAQTGTGKTASFVLPML++
Sbjct: 4   FADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLERG
Sbjct: 64  LEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL 
Sbjct: 124 ADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+QK+++ FLQNP+RIEV  P+S A+T+   FVA++++  +K A+L++L+++Q
Sbjct: 184 FSATMPPEIQKLADRFLQNPERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLRELVRAQ 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +KN IIFCN+KK+V +L  SLE+ GFSV A+HG++DQRSR  +L +F++G +QL+VAS
Sbjct: 244 GELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMMLQSFRDGNLQLLVAS 303

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIPDV HVFNFDVP  +E+Y+HRIGRTGRAGR G AFTLV K D K +DAIEK
Sbjct: 304 DVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKFVDAIEK 363

Query: 363 LIEKKVDWLNGDLSSLNPPLEKID 386
           LI +KV+WL+GD++SL P  E  D
Sbjct: 364 LIGEKVEWLSGDVNSLPPAEESAD 387


>gi|218462794|ref|ZP_03502885.1| ATP dependent RNA helicase protein [Rhizobium etli Kim 5]
          Length = 398

 Score =  564 bits (1454), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 264/384 (68%), Positives = 322/384 (83%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS KV+ AV DAGY  PTPIQ   IP  L+R D+CGIAQTGTGKTASFVLPML++
Sbjct: 4   FADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLERG
Sbjct: 64  LEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL 
Sbjct: 124 ADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+QK+++ FLQNP+RIEV  P+S A+T+   FVA++++  +K A+L++L+++Q
Sbjct: 184 FSATMPPEIQKLADRFLQNPERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLRELVRAQ 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +KN IIFCN+KK+V +L  SLE+ GFSV A+HG++DQRSR  +L +F++G +QL+VAS
Sbjct: 244 TELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMMLQSFRDGNLQLLVAS 303

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIPDV HVFNFDVP  +E+Y+HRIGRTGRAGR G AFTLV K D K +DAIEK
Sbjct: 304 DVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKFVDAIEK 363

Query: 363 LIEKKVDWLNGDLSSLNPPLEKID 386
           LI +K++WLNGDL++L P  E  D
Sbjct: 364 LIGEKIEWLNGDLNALPPAEEGKD 387


>gi|227822081|ref|YP_002826052.1| ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
 gi|227341081|gb|ACP25299.1| ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
          Length = 501

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 264/382 (69%), Positives = 316/382 (82%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FADLGLS KV+ AV DAGY  PTPIQ   IP  LQR D+ GIAQTGTGKTASFVLPMLT
Sbjct: 3   NFADLGLSQKVLSAVTDAGYATPTPIQAGAIPPALQRRDILGIAQTGTGKTASFVLPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQVA+NF+KYGKN+ L +ALLIGG+ F+ Q++KLER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLER 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLICTPGR+LDHF RGKLLM  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 123 GADVLICTPGRLLDHFERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+QK+++ FLQNP+R+EV  P+STA T+   FVA + +  +K A+L+ L+++
Sbjct: 183 FFSATMPPEIQKLADRFLQNPERVEVARPASTANTVTQRFVAAHGKDYEKRAVLRDLIRA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q  +KN IIFCN+KK+V  L  SL++ GFSV A+HG++DQRSRM +L+NFK+G IQL+VA
Sbjct: 243 QGELKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDGNIQLLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR G +FT+V K D K  DAIE
Sbjct: 303 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGASFTIVTKRDTKFSDAIE 362

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           KLI + V+WLNGDLS L  P+E
Sbjct: 363 KLIGQTVEWLNGDLSQLPEPME 384


>gi|209549507|ref|YP_002281424.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535263|gb|ACI55198.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 505

 Score =  561 bits (1446), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 262/384 (68%), Positives = 321/384 (83%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS KV+ AV DAGY  PTPIQ   IP  L+R D+CGIAQTGTGKTASFVLPML++
Sbjct: 4   FADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLERG
Sbjct: 64  LEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I  ++PFTRQTL 
Sbjct: 124 ADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+QK+++ FLQNP+RIEV  P+S A+T+   FVA++++  +K A+L++L+++Q
Sbjct: 184 FSATMPPEIQKLADRFLQNPERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLRELVRAQ 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +KN IIFCN+KK+V +L  SLE+ GFSV A+HG++DQRSR   L +F++G +QL+VAS
Sbjct: 244 TELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTLQSFRDGNLQLLVAS 303

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIPDV HVFNFDVP  +E+Y+HRIGRTGRAGR G +FTLV K D K +DAIEK
Sbjct: 304 DVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGASFTLVTKRDSKFVDAIEK 363

Query: 363 LIEKKVDWLNGDLSSLNPPLEKID 386
           LI +KV+WL+GD++SL P  E  D
Sbjct: 364 LIGEKVEWLSGDVNSLPPAEESAD 387


>gi|325293235|ref|YP_004279099.1| ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
 gi|325061088|gb|ADY64779.1| ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
          Length = 533

 Score =  558 bits (1438), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 263/385 (68%), Positives = 320/385 (83%), Gaps = 1/385 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGLS KV+ A+ DAGY  PTPIQ   IP  L++ D+CGIAQTGTGKTASFVLPMLT+
Sbjct: 33  FSDLGLSQKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPMLTL 92

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLERG
Sbjct: 93  LEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLERG 152

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLICTPGR+LDH  RGKLLM  +EILVIDEADRMLDMGFIP I+ I  ++PFTRQTL 
Sbjct: 153 ADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLF 212

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+QK+++ FLQNP RIEV  PSSTA+T+    VA++ +  +K A+L+ L++++
Sbjct: 213 FSATMPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVASHNKDYEKRAVLRDLVRAE 272

Query: 243 DT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +KN IIFCN+KK+V +L  SL++ GFSV A+HG++DQRSR  +L NF++G + L+VA
Sbjct: 273 EAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQLTLLVA 332

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFTLV K D K++DAIE
Sbjct: 333 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAKYLDAIE 392

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKID 386
           KLI +KV+WLNGDLSSL  P+E  +
Sbjct: 393 KLITEKVEWLNGDLSSLPAPMESFE 417


>gi|150396691|ref|YP_001327158.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150028206|gb|ABR60323.1| DEAD/DEAH box helicase domain protein [Sinorhizobium medicae
           WSM419]
          Length = 499

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 270/417 (64%), Positives = 329/417 (78%), Gaps = 5/417 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FADLGLS KV+ AV DAGY  PTPIQI  IP  LQR D+ GIAQTGTGKTASFVLPMLT
Sbjct: 3   NFADLGLSQKVLSAVTDAGYTIPTPIQIGAIPPALQRRDILGIAQTGTGKTASFVLPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQVA+NF+KYGKN+ L +ALLIGG+ F+ Q++KLER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLER 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLICTPGR+LDH  RGKLLM+ +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 123 GADVLICTPGRLLDHCERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+QK+++ FLQNP+R+EV   SSTA T+    VA + +  +K A+L++L++S
Sbjct: 183 FFSATMPPEIQKLADRFLQNPERVEVARRSSTAITVTQRLVAAHGKDYEKRAVLRELIRS 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q+ +KN IIFCN+KK+V  L  SL++ GFSV A+HG++DQRSRM +L+NFK+G I+L+VA
Sbjct: 243 QEDLKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDGNIKLLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR G +FT+V K DIK  DAIE
Sbjct: 303 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGASFTIVTKRDIKFADAIE 362

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           KLI ++V+W NGDLS L  P+E      H+  R      +K    +R  K  S  K+
Sbjct: 363 KLIGQEVEWHNGDLSELPEPME-----SHDSRRDRGSDGRKDRKRERPVKTRSDHKA 414


>gi|15965498|ref|NP_385851.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
           1021]
 gi|307302618|ref|ZP_07582374.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
 gi|307318465|ref|ZP_07597899.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
 gi|15074679|emb|CAC46324.1| Putative ATP-dependent RNA helicase [Sinorhizobium meliloti 1021]
 gi|306895805|gb|EFN26557.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
 gi|306902982|gb|EFN33573.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 499

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 264/385 (68%), Positives = 318/385 (82%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FADLGLS KV+ AV DAGY  PTPIQ+  IP  LQR D+ GIAQTGTGKTASFVLPMLT
Sbjct: 3   NFADLGLSQKVLSAVTDAGYTIPTPIQVGAIPPALQRRDILGIAQTGTGKTASFVLPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQVA+NF+KYGKN+ L +ALLIGG+ F+ Q++KLER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLER 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLICTPGR+LDH  RGKLLM  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 123 GADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+QK+++ FLQNP+R+EV   SSTA T+   FVA + +  +K A+L++L++S
Sbjct: 183 FFSATMPPEIQKLADRFLQNPERLEVARRSSTAITVTQRFVAAHGKDYEKRAVLRELIRS 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q+ +KN IIFCN+KK+V  L  SL++ GFSV A+HG++DQRSRM +L+NFK+G I+L+VA
Sbjct: 243 QEDLKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDGNIKLLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR G AFT+V K + K  DAIE
Sbjct: 303 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGAAFTIVTKRETKFSDAIE 362

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKID 386
           KLI +KV+W NGDLS L  P+E  D
Sbjct: 363 KLIGQKVEWFNGDLSELPEPMESHD 387


>gi|15889136|ref|NP_354817.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
 gi|15156946|gb|AAK87602.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
          Length = 503

 Score =  555 bits (1430), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 261/385 (67%), Positives = 319/385 (82%), Gaps = 1/385 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGLS KV+ A+ DAGY  PTPIQ   IP  L++ D+CGIAQTGTGKTASFVLPMLT+
Sbjct: 4   FSDLGLSQKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPMLTL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLERG
Sbjct: 64  LEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLERG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLICTPGR+LDH  RGKLLM  +EILVIDEADRMLDMGFIP I+ I  ++PFTRQTL 
Sbjct: 124 ADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+QK+++ FLQNP RIEV  PSSTA+T+    VA + +  +K A+L+ L++++
Sbjct: 184 FSATMPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVAAHNKDYEKRAVLRDLVRAE 243

Query: 243 DT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +KN IIFCN+KK+V +L  SL++ GFSV A+HG++DQRSR  +L NF++G + L+VA
Sbjct: 244 EAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQLTLLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFTLV K D K++DAIE
Sbjct: 304 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAKYLDAIE 363

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKID 386
           KLI +K++WL+GDLSSL  P+E  +
Sbjct: 364 KLIAEKIEWLSGDLSSLPAPMESFE 388


>gi|222148785|ref|YP_002549742.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
 gi|221735771|gb|ACM36734.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
          Length = 516

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 266/438 (60%), Positives = 326/438 (74%), Gaps = 19/438 (4%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           +S KV+ AV DAGY  PTPIQ   IP  L R D+CGIAQTGTGKTASFVLPMLT+LEKGR
Sbjct: 1   MSQKVLSAVTDAGYTVPTPIQAGAIPPALMRRDICGIAQTGTGKTASFVLPMLTLLEKGR 60

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
           AR RMPRTLI+EPTRELAAQVA+NFEKYGKN+ L +ALLIGG+ F+ Q++KLERGADVLI
Sbjct: 61  ARARMPRTLIMEPTRELAAQVAENFEKYGKNHKLNIALLIGGVSFDEQDRKLERGADVLI 120

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
           CTPGR+LDH  RGKLLM  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL FSATM
Sbjct: 121 CTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFSATM 180

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
             E+QK+++ FLQNP+RIEV  PSSTA+T+    VA   +  +K + L+ ++++QD +KN
Sbjct: 181 PPEIQKLADKFLQNPERIEVAPPSSTAKTVTQRLVACQNKDYEKRSTLRDIIRAQDDLKN 240

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            IIFCN+KK+V +L  SLE+ GFSV A+HG++DQRSR  +L+ FK+  I L+VASD+AAR
Sbjct: 241 AIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTNMLAGFKDNQITLLVASDVAAR 300

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           GLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR G+AFTLV K D K++DAIEKLI +K
Sbjct: 301 GLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGRAFTLVTKSDAKYLDAIEKLIGEK 360

Query: 368 VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR----------------RKK 411
            +WL+GD++SL P  E     +     KN    +  +G DR                R  
Sbjct: 361 PEWLDGDVASLPPMAEGDRDERRGRGGKN---ARDKSGSDRNGSDRGRGRERSRDGARDG 417

Query: 412 NYSSQKSHIPLKESEKIS 429
           +   + SH P    E+IS
Sbjct: 418 DREHRSSHKPDTTEEQIS 435


>gi|163759551|ref|ZP_02166636.1| ATP dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
 gi|162283148|gb|EDQ33434.1| ATP dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
          Length = 509

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 249/372 (66%), Positives = 294/372 (79%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS KV+ AV DAGY  PTPIQ   IP  L+R D+ GIAQTGTGKTASFVLPMLT+
Sbjct: 4   FADLGLSQKVLSAVTDAGYTTPTPIQAGAIPPALERRDILGIAQTGTGKTASFVLPMLTM 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+GRAR RMPRTLILEPTRELAAQV +NFEKYGKN+ L + LLIGG+ FE Q +KLERG
Sbjct: 64  LERGRARARMPRTLILEPTRELAAQVHENFEKYGKNHRLNIVLLIGGVSFEEQYRKLERG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLI TPGR+LDH  RGKLLM  +E+LVIDEADRMLDMGFIP I+ I  L+PFTRQTL 
Sbjct: 124 ADVLIATPGRLLDHTERGKLLMTGVELLVIDEADRMLDMGFIPDIERIVKLIPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+QK+++ FLQNP RIEV  PSSTA T+    VA   +  +K   L+ L++SQ
Sbjct: 184 FSATMPPEIQKLADKFLQNPARIEVAPPSSTAATVTQKLVACSGKDFEKRERLRDLIRSQ 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             + N IIFCN+KK+V +L  SLEK GFSV A+HG++DQRSR  +L  FK+  I L+VAS
Sbjct: 244 TDLTNAIIFCNRKKDVADLYKSLEKHGFSVGALHGDMDQRSRTNMLQGFKDNEITLLVAS 303

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIP V HVFNFDVP  AE+Y+HRIGRTGRAGR G AFTLV + D K++DAI K
Sbjct: 304 DVAARGLDIPAVSHVFNFDVPIHAEDYVHRIGRTGRAGREGAAFTLVNRRDTKYVDAITK 363

Query: 363 LIEKKVDWLNGD 374
           LI + ++WL+GD
Sbjct: 364 LITRDIEWLDGD 375


>gi|225627424|ref|ZP_03785461.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo]
 gi|256159665|ref|ZP_05457418.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           ceti M490/95/1]
 gi|256254934|ref|ZP_05460470.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           ceti B1/94]
 gi|260168662|ref|ZP_05755473.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           sp. F5/99]
 gi|261222116|ref|ZP_05936397.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           B1/94]
 gi|261758136|ref|ZP_06001845.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|265998081|ref|ZP_06110638.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M490/95/1]
 gi|225617429|gb|EEH14474.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo]
 gi|260920700|gb|EEX87353.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           B1/94]
 gi|261738120|gb|EEY26116.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|262552549|gb|EEZ08539.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M490/95/1]
          Length = 435

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 263/453 (58%), Positives = 324/453 (71%), Gaps = 27/453 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLSPKV+ AV  AGY  PTPIQ   IP  L+R DV GIAQTGTGKTASFVLPMLT+
Sbjct: 4   FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLERG
Sbjct: 64  LEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLERG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL 
Sbjct: 124 ADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+ K++E FL +P RIEV   SSTA+T+    V +  +   K A+L+ L+QS+
Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSE 243

Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D++KN IIFCN+KK+V  L  SL +  F   A+HG++DQR+RM +LS+FK+G ++L+VA
Sbjct: 244 GDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V   D K++ AIE
Sbjct: 304 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAIE 363

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
            +I +K++W +GDLS+L              A       Q   G + R K  + Q  H  
Sbjct: 364 SMIGEKIEWHDGDLSTL--------------AVSEEADEQPRKGRNARGKPQTEQHKH-- 407

Query: 422 LKESEKISKLQQDIQENDADSLGFRGNMPAFML 454
                     ++D  ++    +GF  ++PAFML
Sbjct: 408 ----------RRDRDDDGPAPVGFGNDIPAFML 430


>gi|319408422|emb|CBI82077.1| ATP-dependent RNA helicase [Bartonella schoenbuchensis R1]
          Length = 470

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 266/463 (57%), Positives = 329/463 (71%), Gaps = 6/463 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS KV+ AV  AGY  PTPIQ +TIP VLQR DV GIAQTGTGKTASFVLPMLT+
Sbjct: 8   FDDLGLSEKVIKAVRSAGYTAPTPIQSETIPHVLQRKDVLGIAQTGTGKTASFVLPMLTL 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQV +NF+KYG N+ L V LLIGG+ FE QN+KLE+G
Sbjct: 68  LEKGRARARMPRTLILEPTRELAAQVQENFDKYGLNHRLNVVLLIGGVSFEDQNRKLEQG 127

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLI TPGR+LDHF RGKLL+   EILVIDEADRMLDMGFIP I+ I  L PFTRQTL 
Sbjct: 128 ADVLIATPGRLLDHFERGKLLLIGTEILVIDEADRMLDMGFIPDIERICKLTPFTRQTLF 187

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+ K++E FL +P  +EV   SSTA TI    V + ++   K A+L++L+ ++
Sbjct: 188 FSATMAPEITKLTEQFLHSPICVEVTKASSTATTITQRLVKSGSKAWDKRAVLRELIDNE 247

Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D +KN IIFCN+KK++  L  SL K  FSV A+HG++DQ SRM  L++FK+  + L+VA
Sbjct: 248 GDELKNAIIFCNRKKDISELFRSLTKYNFSVGALHGDMDQHSRMNTLADFKDNKLTLLVA 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFN+DVP  AE+YIHRIGRTGRA R GKAFT+V  +D K+I AIE
Sbjct: 308 SDVAARGLDIPDVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTHDDQKYISAIE 367

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKID----IAQHNHAR-KNNPIPQKSTGFDRRKKNYSSQ 416
           K+ ++K++WLNGDLS+L+   +  D    I +   A+      P+K T   ++       
Sbjct: 368 KISKEKIEWLNGDLSTLSISDQTNDSNDSIVKTKSAKLSKKSTPKKHTAHTKKASKEDKT 427

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRG 459
                 K      +L    ++ +   LGF  ++PAFML K R 
Sbjct: 428 SHSKTTKNKINSPELSHSEKDQNHTPLGFGADVPAFMLIKTRS 470


>gi|153009579|ref|YP_001370794.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561467|gb|ABS14965.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 498

 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 251/393 (63%), Positives = 308/393 (78%), Gaps = 1/393 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLSPKV+ AV  AGY  PTPIQ   IP  L+R DV GIAQTGTGKTASFVLPMLT+
Sbjct: 18  FAELGLSPKVLAAVEAAGYSAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 77

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ F+ Q +KLERG
Sbjct: 78  LEKGRARARMPRTLILEPTRELAAQVEENFTKYGVNHRLNVALLIGGVSFDEQERKLERG 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL 
Sbjct: 138 ADVLIATPGRLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+ K++E FL +P R+EV   SSTA+T+    V +  +   K A+L+ L++++
Sbjct: 198 FSATMPPEITKLTEQFLHSPTRVEVAKASSTAKTVTQRLVKSSKKDWDKRAVLRDLVRAE 257

Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            DT+KN IIFCN+KK+V  L  SL +  F+  A+HG++DQR+RM +L+NFKEG +QL+VA
Sbjct: 258 GDTLKNAIIFCNRKKDVSELFRSLTRHEFNAGALHGDMDQRARMTMLANFKEGKLQLLVA 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  +E+Y+HRIGRTGRAGR GKAFT+V   D K++ AIE
Sbjct: 318 SDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGKAFTIVTPSDTKYLAAIE 377

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
            +I +K++WL+GDLS+L    E  D  +  +AR
Sbjct: 378 NMIGEKIEWLDGDLSTLPASDEADDPRKSKNAR 410


>gi|306840451|ref|ZP_07473211.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
 gi|306289585|gb|EFM60800.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
          Length = 482

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/377 (66%), Positives = 300/377 (79%), Gaps = 1/377 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLSPKV+ AV  AGY  PTPIQ   IP  L+R DV GIAQTGTGKTASFVLPMLT+
Sbjct: 4   FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLERG
Sbjct: 64  LEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLERG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL 
Sbjct: 124 ADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+ K++E FL +P RIEV   SSTA+T+    V +  +   K A+L+ L+QS+
Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSE 243

Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            DT+KN IIFCN+KK+V  L  SL +  F   A+HG++DQR+RM +LS+FK+G ++L+VA
Sbjct: 244 GDTLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V   D K++ AIE
Sbjct: 304 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAIE 363

Query: 362 KLIEKKVDWLNGDLSSL 378
            +I +K++W +GDLS+L
Sbjct: 364 SMIGEKIEWHDGDLSTL 380


>gi|306843833|ref|ZP_07476431.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1]
 gi|306275911|gb|EFM57627.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1]
          Length = 482

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/377 (66%), Positives = 300/377 (79%), Gaps = 1/377 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLSPKV+ AV  AGY  PTPIQ   IP  L+R DV GIAQTGTGKTASFVLPMLT+
Sbjct: 4   FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLERG
Sbjct: 64  LEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLERG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL 
Sbjct: 124 ADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+ K++E FL +P RIEV   SSTA+T+    V +  +   K A+L+ L+QS+
Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSE 243

Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            DT+KN IIFCN+KK+V  L  SL +  F   A+HG++DQR+RM +LS+FK+G ++L+VA
Sbjct: 244 GDTLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V   D K++ AIE
Sbjct: 304 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAIE 363

Query: 362 KLIEKKVDWLNGDLSSL 378
            +I +K++W +GDLS+L
Sbjct: 364 SMIGEKIEWHDGDLSTL 380


>gi|254693665|ref|ZP_05155493.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 3 str. Tulya]
 gi|261213932|ref|ZP_05928213.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|260915539|gb|EEX82400.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
          Length = 482

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 248/377 (65%), Positives = 301/377 (79%), Gaps = 1/377 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLSPKV+ AV  AGY  PTPIQ+  IP  L+R DV GIAQTGTGKTASFVLPMLT+
Sbjct: 4   FAELGLSPKVIAAVEAAGYTAPTPIQVGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLERG
Sbjct: 64  LEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLERG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL 
Sbjct: 124 ADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+ K++E FL +P RIEV   SSTA+T+    V +  +   K A+L+ L+QS+
Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSE 243

Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D++KN IIFCN+KK+V  L  SL +  F   A+HG++DQR+RM +LS+FK+G ++L+VA
Sbjct: 244 GDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V   D K++ AIE
Sbjct: 304 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAIE 363

Query: 362 KLIEKKVDWLNGDLSSL 378
            +I +K++W +GDLS+L
Sbjct: 364 SMIGEKIEWHDGDLSTL 380


>gi|114704563|ref|ZP_01437471.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Fulvimarina pelagi HTCC2506]
 gi|114539348|gb|EAU42468.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Fulvimarina pelagi HTCC2506]
          Length = 508

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/377 (64%), Positives = 300/377 (79%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGLS KV+ AV   GY +PTPIQ + IP  L+R DV GIAQTGTGKTASFVLPMLT+
Sbjct: 4   FSELGLSAKVLAAVEATGYTQPTPIQAEAIPHALERRDVLGIAQTGTGKTASFVLPMLTM 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLI+EPTRELAAQV ++F +YGK   L VALLIGG+ FE Q+KKL+RG
Sbjct: 64  LEKGRARARMPRTLIIEPTRELAAQVEESFARYGKEQKLNVALLIGGMSFEEQDKKLDRG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL 
Sbjct: 124 CDVLIATPGRLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLLPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+ K+++ FLQNP R+EV  P+S A T+E   VA+ A+   K A L+ LL++ 
Sbjct: 184 FSATMPPEITKLTQQFLQNPVRVEVAKPASAALTVEQRLVASGAKDYDKRARLRDLLRAN 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           + + N IIFCN+K++V  L  SLEK GFS  A+HG++DQR+RM +L NF+E  +QL+VAS
Sbjct: 244 EDVTNAIIFCNRKRDVSTLFRSLEKHGFSAGALHGDMDQRARMTMLHNFREDKLQLLVAS 303

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIP V HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFTLV K + KH+DAI+K
Sbjct: 304 DVAARGLDIPAVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSETKHLDAIKK 363

Query: 363 LIEKKVDWLNGDLSSLN 379
           LI  +++WL+GDLS + 
Sbjct: 364 LIGTEIEWLDGDLSKVE 380


>gi|239831816|ref|ZP_04680145.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301]
 gi|239824083|gb|EEQ95651.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301]
          Length = 484

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 250/393 (63%), Positives = 307/393 (78%), Gaps = 1/393 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLSPKV+ AV  AGY  PTPIQ   IP  L+R DV GIAQTGTGKTASFVLPMLT+
Sbjct: 4   FAELGLSPKVLAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N  L VALLIGG+ F+ Q +KLERG
Sbjct: 64  LEKGRARARMPRTLILEPTRELAAQVEENFAKYGINQRLNVALLIGGVSFDDQERKLERG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL 
Sbjct: 124 ADVLIATPGRLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+ K++E FL +P R+EV   SSTA+T+    V +  +   K A+L+ L++++
Sbjct: 184 FSATMPPEITKLTEQFLHSPTRVEVAKASSTAKTVTQRLVKSTKKDWDKRAVLRDLIRAE 243

Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            DT+KN IIFCN+KK+V  L  SL +  F+  A+HG++DQR+RM +LSNFK+G +QL+VA
Sbjct: 244 GDTLKNAIIFCNRKKDVSELFRSLTRHEFNAGALHGDMDQRARMTMLSNFKDGKLQLLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFD+P  +E+Y+HRIGRTGRAGR GKAFT+V   D K++ AIE
Sbjct: 304 SDVAARGLDIPDVSHVFNFDIPIHSEDYVHRIGRTGRAGRSGKAFTIVTPSDTKYLAAIE 363

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
            +I +K++WL+GDLS+L    E  D  +  +AR
Sbjct: 364 DMIGEKIEWLDGDLSTLPASDEADDPRKGKNAR 396


>gi|163843207|ref|YP_001627611.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445]
 gi|163673930|gb|ABY38041.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445]
          Length = 482

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 248/377 (65%), Positives = 300/377 (79%), Gaps = 1/377 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLSPKV+ AV  AGY  PTPIQ   IP  L+R DV GIAQTGTGKTASFVLPMLT+
Sbjct: 4   FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLERG
Sbjct: 64  LEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLERG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL 
Sbjct: 124 ADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+ K++E FL +P RIEV   SSTA+T+    V +  +   K A+L+ L+QS+
Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSE 243

Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D++KN IIFCN+KK+V  L  SL +  F   A+HG++DQR+RM +LS+FK+G ++L+VA
Sbjct: 244 GDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V   D K++ AIE
Sbjct: 304 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAIE 363

Query: 362 KLIEKKVDWLNGDLSSL 378
            +I +K++W +GDLS+L
Sbjct: 364 SMIGEKIEWHDGDLSTL 380


>gi|23501822|ref|NP_697949.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
 gi|161618894|ref|YP_001592781.1| ATP-dependent RNA helicase DDX17 [Brucella canis ATCC 23365]
 gi|254701699|ref|ZP_05163527.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           suis bv. 5 str. 513]
 gi|254704242|ref|ZP_05166070.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           suis bv. 3 str. 686]
 gi|256061039|ref|ZP_05451195.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           neotomae 5K33]
 gi|256369364|ref|YP_003106872.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
 gi|260566511|ref|ZP_05836981.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
 gi|261325038|ref|ZP_05964235.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261752249|ref|ZP_05995958.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261754908|ref|ZP_05998617.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|294852292|ref|ZP_06792965.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026]
 gi|23347756|gb|AAN29864.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis
           1330]
 gi|161335705|gb|ABX62010.1| Probable ATP-dependent RNA helicase DDX17 [Brucella canis ATCC
           23365]
 gi|255999524|gb|ACU47923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
 gi|260156029|gb|EEW91109.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
 gi|261301018|gb|EEY04515.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261742002|gb|EEY29928.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261744661|gb|EEY32587.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|294820881|gb|EFG37880.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026]
          Length = 482

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 248/377 (65%), Positives = 300/377 (79%), Gaps = 1/377 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLSPKV+ AV  AGY  PTPIQ   IP  L+R DV GIAQTGTGKTASFVLPMLT+
Sbjct: 4   FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLERG
Sbjct: 64  LEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLERG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL 
Sbjct: 124 ADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+ K++E FL +P RIEV   SSTA+T+    V +  +   K A+L+ L+QS+
Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSE 243

Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D++KN IIFCN+KK+V  L  SL +  F   A+HG++DQR+RM +LS+FK+G ++L+VA
Sbjct: 244 GDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V   D K++ AIE
Sbjct: 304 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAIE 363

Query: 362 KLIEKKVDWLNGDLSSL 378
            +I +K++W +GDLS+L
Sbjct: 364 SMIGEKIEWHDGDLSTL 380


>gi|254706857|ref|ZP_05168685.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis
           M163/99/10]
 gi|254710035|ref|ZP_05171846.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis B2/94]
 gi|254714037|ref|ZP_05175848.1| ATP-dependent RNA helicase DDX17 [Brucella ceti M644/93/1]
 gi|254716905|ref|ZP_05178716.1| ATP-dependent RNA helicase DDX17 [Brucella ceti M13/05/1]
 gi|256031530|ref|ZP_05445144.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis M292/94/1]
 gi|261218712|ref|ZP_05932993.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261314321|ref|ZP_05953518.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|261317582|ref|ZP_05956779.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261321790|ref|ZP_05960987.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|265988616|ref|ZP_06101173.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M292/94/1]
 gi|260923801|gb|EEX90369.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261294480|gb|EEX97976.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|261296805|gb|EEY00302.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261303347|gb|EEY06844.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|264660813|gb|EEZ31074.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M292/94/1]
          Length = 482

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 266/474 (56%), Positives = 333/474 (70%), Gaps = 22/474 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLSPKV+ AV  AGY  PTPIQ   IP  L+R DV GIAQTGTGKTASFVLPMLT+
Sbjct: 4   FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLERG
Sbjct: 64  LEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLERG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL 
Sbjct: 124 ADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+ K++E FL +P RIEV   SSTA+T+    V +  +   K A+L+ L+QS+
Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSE 243

Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D++KN IIFCN+KK+V  L  SL +  F   A+HG++DQR+RM +LS+FK+G ++L+VA
Sbjct: 244 GDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V   D K++ AIE
Sbjct: 304 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAIE 363

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHN-HAR----------KNNPI----------P 400
            +I +K++W +GDLS+L    E  +  +   +AR           + P+          P
Sbjct: 364 SMIGEKIEWHDGDLSTLAVSEEADEQPRKGRNARGKGKEKPKEKASKPVAAETVDPAGQP 423

Query: 401 QKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFML 454
           Q       R++   S       K   +  K ++D  ++    +GF  ++PAFML
Sbjct: 424 QPVIENQHRREAIRSSNEERRGKPQTEQHKHRRDRDDDGPAPVGFGNDIPAFML 477


>gi|17987318|ref|NP_539952.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 1 str.
           16M]
 gi|225852449|ref|YP_002732682.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis ATCC 23457]
 gi|254689182|ref|ZP_05152436.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 6 str. 870]
 gi|256044606|ref|ZP_05447510.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256113486|ref|ZP_05454320.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|256257432|ref|ZP_05462968.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 9 str. C68]
 gi|256264057|ref|ZP_05466589.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|260563958|ref|ZP_05834444.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|260754681|ref|ZP_05867029.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260883707|ref|ZP_05895321.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|265991030|ref|ZP_06103587.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265994867|ref|ZP_06107424.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|297248281|ref|ZP_06931999.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196]
 gi|17982999|gb|AAL52216.1| ATP-dependent RNA helicase dead [Brucella melitensis bv. 1 str.
           16M]
 gi|225640814|gb|ACO00728.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis ATCC 23457]
 gi|260153974|gb|EEW89066.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|260674789|gb|EEX61610.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260873235|gb|EEX80304.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|262765980|gb|EEZ11769.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|263001814|gb|EEZ14389.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263094252|gb|EEZ18122.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|297175450|gb|EFH34797.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196]
 gi|326408963|gb|ADZ66028.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis M28]
 gi|326538677|gb|ADZ86892.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis M5-90]
          Length = 482

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 248/377 (65%), Positives = 300/377 (79%), Gaps = 1/377 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLSPKV+ AV  AGY  PTPIQ   IP  L+R DV GIAQTGTGKTASFVLPMLT+
Sbjct: 4   FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLERG
Sbjct: 64  LEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLERG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL 
Sbjct: 124 ADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+ K++E FL +P RIEV   SSTA+T+    V +  +   K A+L+ L+QS+
Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSE 243

Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D++KN IIFCN+KK+V  L  SL +  F   A+HG++DQR+RM +LS+FK+G ++L+VA
Sbjct: 244 GDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V   D K++ AIE
Sbjct: 304 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAIE 363

Query: 362 KLIEKKVDWLNGDLSSL 378
            +I +K++W +GDLS+L
Sbjct: 364 SMIGEKIEWHDGDLSTL 380


>gi|254719036|ref|ZP_05180847.1| ATP-dependent RNA helicase DDX17 [Brucella sp. 83/13]
 gi|265984026|ref|ZP_06096761.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
 gi|264662618|gb|EEZ32879.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
          Length = 482

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 248/377 (65%), Positives = 300/377 (79%), Gaps = 1/377 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLSPKV+ AV  AGY  PTPIQ   IP  L+R DV GIAQTGTGKTASFVLPMLT+
Sbjct: 4   FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLERG
Sbjct: 64  LEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLERG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL 
Sbjct: 124 ADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+ K++E FL +P RIEV   SSTA+T+    V +  +   K A+L+ L+QS+
Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSE 243

Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D++KN IIFCN+KK+V  L  SL +  F   A+HG++DQR+RM +LS+FK+G ++L+VA
Sbjct: 244 GDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V   D K++ AIE
Sbjct: 304 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAIE 363

Query: 362 KLIEKKVDWLNGDLSSL 378
            +I +K++W +GDLS+L
Sbjct: 364 SMIGEKIEWHDGDLSTL 380


>gi|62289879|ref|YP_221672.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 1 str.
           9-941]
 gi|82699806|ref|YP_414380.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308]
 gi|189024121|ref|YP_001934889.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|237815373|ref|ZP_04594371.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A]
 gi|254697319|ref|ZP_05159147.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254730216|ref|ZP_05188794.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 4 str. 292]
 gi|260545377|ref|ZP_05821118.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260757905|ref|ZP_05870253.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260761727|ref|ZP_05874070.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|62196011|gb|AAX74311.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615907|emb|CAJ10911.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Brucella melitensis biovar Abortus 2308]
 gi|189019693|gb|ACD72415.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|237790210|gb|EEP64420.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A]
 gi|260096784|gb|EEW80659.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260668223|gb|EEX55163.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260672159|gb|EEX58980.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
          Length = 482

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 248/377 (65%), Positives = 300/377 (79%), Gaps = 1/377 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLSPKV+ AV  AGY  PTPIQ   IP  L+R DV GIAQTGTGKTASFVLPMLT+
Sbjct: 4   FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLERG
Sbjct: 64  LEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLERG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL 
Sbjct: 124 ADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+ K++E FL +P RIEV   SSTA+T+    V +  +   K A+L+ L+QS+
Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSE 243

Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D++KN IIFCN+KK+V  L  SL +  F   A+HG++DQR+RM +LS+FK+G ++L+VA
Sbjct: 244 GDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V   D K++ AIE
Sbjct: 304 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAIE 363

Query: 362 KLIEKKVDWLNGDLSSL 378
            +I +K++W +GDLS+L
Sbjct: 364 SMIGEKIEWHDGDLSTL 380


>gi|306840076|ref|ZP_07472862.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
 gi|306404804|gb|EFM61097.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
          Length = 482

 Score =  514 bits (1325), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 248/377 (65%), Positives = 300/377 (79%), Gaps = 1/377 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLSPKV+ AV  AGY  PTPIQ   IP  L+R DV GIAQTGTGKTASFVLPMLT+
Sbjct: 4   FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLERG
Sbjct: 64  LEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLERG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL 
Sbjct: 124 ADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+ K++E FL +P RIEV   SSTA+T+    V +  +   K A+L+ L+QS+
Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSE 243

Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D++KN IIFCN+KK+V  L  SL +  F   A+HG++DQR+RM +LS+FK+G ++L+VA
Sbjct: 244 GDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V   D K++ AIE
Sbjct: 304 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTLSDTKYLAAIE 363

Query: 362 KLIEKKVDWLNGDLSSL 378
            +I +K++W +GDLS+L
Sbjct: 364 SMIGEKIEWHDGDLSTL 380


>gi|148559195|ref|YP_001258911.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840]
 gi|148370452|gb|ABQ60431.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis
           ATCC 25840]
          Length = 482

 Score =  514 bits (1325), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 247/377 (65%), Positives = 300/377 (79%), Gaps = 1/377 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLSPKV+ AV  AGY  PTPIQ   IP  L+R DV GIAQTGTGKTASFVLPMLT+
Sbjct: 4   FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQV +NF KYG ++ L VALLIGG+ FE Q +KLERG
Sbjct: 64  LEKGRARARMPRTLILEPTRELAAQVEENFVKYGIDHRLNVALLIGGVSFEEQERKLERG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL 
Sbjct: 124 ADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+ K++E FL +P RIEV   SSTA+T+    V +  +   K A+L+ L+QS+
Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSE 243

Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D++KN IIFCN+KK+V  L  SL +  F   A+HG++DQR+RM +LS+FK+G ++L+VA
Sbjct: 244 GDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V   D K++ AIE
Sbjct: 304 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAIE 363

Query: 362 KLIEKKVDWLNGDLSSL 378
            +I +K++W +GDLS+L
Sbjct: 364 SMIGEKIEWHDGDLSTL 380


>gi|218532241|ref|YP_002423057.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4]
 gi|218524544|gb|ACK85129.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 519

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 243/427 (56%), Positives = 316/427 (74%), Gaps = 3/427 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS KV+ AV  AGY +PTPIQ + IP VL R DV GIAQTGTGKTA+F LPML
Sbjct: 1   MSFADLGLSDKVLQAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LE GRAR RMPRTLILEPTRELAAQV +NFE+YG N+ L VAL+IGG+ F  Q+ KL 
Sbjct: 61  TMLETGRARARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDHF RGKLL+  +E+LVIDEADRMLDMGFIP I+ I  +VPFTRQT
Sbjct: 121 RGTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++++++ FL NP+R+EV  P+STA TIE   VAT A+  +K  +L+ L++
Sbjct: 181 LFFSATMPPEIERLADMFLHNPQRVEVARPASTATTIEQRLVATGAEGHEKRKVLRHLIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S   ++NGIIFCN+K++V  L  SL   GF+  A+HG++DQR+RM  L  F+ G + L+V
Sbjct: 241 SASELQNGIIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFNFDVP+  E+Y+HRIGRTGRAGR G+AFTL ++ D + + AI
Sbjct: 301 ASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFTLASRSDERSLSAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI + + WL+GDL+S++   ++++  +    R +    +   G + +    S+++S  
Sbjct: 361 ESLIGQPIAWLDGDLASVS---DEVEGDEPRRRRGSRRAKETKGGEEAKSGGRSTERSAA 417

Query: 421 PLKESEK 427
           P  ES +
Sbjct: 418 PSSESPR 424


>gi|240140800|ref|YP_002965280.1| RNA helicase [Methylobacterium extorquens AM1]
 gi|240010777|gb|ACS42003.1| RNA helicase [Methylobacterium extorquens AM1]
          Length = 519

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 243/427 (56%), Positives = 316/427 (74%), Gaps = 3/427 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS KV+ AV  AGY +PTPIQ + IP VL R DV GIAQTGTGKTA+F LPML
Sbjct: 1   MSFADLGLSDKVLQAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LE GRAR RMPRTLILEPTRELAAQV +NFE+YG N+ L VAL+IGG+ F  Q+ KL 
Sbjct: 61  TMLETGRARARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDHF RGKLL+  +E+LVIDEADRMLDMGFIP I+ I  +VPFTRQT
Sbjct: 121 RGTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++++++ FL NP+R+EV  P+STA TIE   VAT A+  +K  +L+ L++
Sbjct: 181 LFFSATMPPEIERLADMFLHNPQRVEVARPASTATTIEQRLVATGAEGHEKRKVLRHLIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S   ++NGIIFCN+K++V  L  SL   GF+  A+HG++DQR+RM  L  F+ G + L+V
Sbjct: 241 SASELQNGIIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFNFDVP+  E+Y+HRIGRTGRAGR G+AFTL ++ D + + AI
Sbjct: 301 ASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFTLASRSDERSLSAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI + + WL+GDL+S++   ++++  +    R +    +   G + +    S+++S  
Sbjct: 361 ESLIGQPIAWLDGDLASVS---DEVEGDEPRRRRGSRRAKETKGGEETKSGGRSTERSAA 417

Query: 421 PLKESEK 427
           P  ES +
Sbjct: 418 PASESPR 424


>gi|163853383|ref|YP_001641426.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163664988|gb|ABY32355.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           PA1]
          Length = 519

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 243/427 (56%), Positives = 316/427 (74%), Gaps = 3/427 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS KV+ AV  AGY +PTPIQ + IP VL R DV GIAQTGTGKTA+F LPML
Sbjct: 1   MSFADLGLSDKVLQAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LE GRAR RMPRTLILEPTRELAAQV +NFE+YG N+ L VAL+IGG+ F  Q+ KL 
Sbjct: 61  TMLETGRARARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDHF RGKLL+  +E+LVIDEADRMLDMGFIP I+ I  +VPFTRQT
Sbjct: 121 RGTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++++++ FL NP+R+EV  P+STA TIE   VAT A+  +K  +L+ L++
Sbjct: 181 LFFSATMPPEIERLADMFLHNPQRVEVARPASTATTIEQRLVATGAEGHEKRKVLRHLIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S   ++NGIIFCN+K++V  L  SL   GF+  A+HG++DQR+RM  L  F+ G + L+V
Sbjct: 241 SASELQNGIIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFNFDVP+  E+Y+HRIGRTGRAGR G+AFTL ++ D + + AI
Sbjct: 301 ASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFTLASRSDERSLSAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI + + WL+GDL+S++   ++++  +    R +    +   G + +    S+++S  
Sbjct: 361 ESLIGQPIAWLDGDLASVS---DEVEGDEPRRRRGSRRAKETKGGEETKSGGRSTERSAA 417

Query: 421 PLKESEK 427
           P  ES +
Sbjct: 418 PASESPR 424


>gi|254563310|ref|YP_003070405.1| RNA helicase [Methylobacterium extorquens DM4]
 gi|254270588|emb|CAX26591.1| RNA helicase [Methylobacterium extorquens DM4]
          Length = 517

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 243/427 (56%), Positives = 316/427 (74%), Gaps = 3/427 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS KV+ AV  AGY +PTPIQ + IP VL R DV GIAQTGTGKTA+F LPML
Sbjct: 1   MSFADLGLSDKVLQAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LE GRAR RMPRTLILEPTRELAAQV +NFE+YG N+ L VAL+IGG+ F  Q+ KL 
Sbjct: 61  TMLETGRARARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDHF RGKLL+  +E+LVIDEADRMLDMGFIP I+ I  +VPFTRQT
Sbjct: 121 RGTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++++++ FL NP+R+EV  P+STA TIE   VAT A+  +K  +L+ L++
Sbjct: 181 LFFSATMPPEIERLADMFLHNPQRVEVARPASTATTIEQRLVATGAEGHEKRKVLRHLIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S   ++NGIIFCN+K++V  L  SL   GF+  A+HG++DQR+RM  L  F+ G + L+V
Sbjct: 241 SASELQNGIIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFNFDVP+  E+Y+HRIGRTGRAGR G+AFTL ++ D + + AI
Sbjct: 301 ASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFTLASRSDERSLSAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI + + WL+GDL+S++   ++++  +    R +    +   G + +    S+++S  
Sbjct: 361 ESLIGQPIAWLDGDLASVS---DEVEGDEPRRRRGSRRAKEAKGGEETKSGGRSTERSAA 417

Query: 421 PLKESEK 427
           P  ES +
Sbjct: 418 PSSESPR 424


>gi|49475435|ref|YP_033476.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
 gi|49238241|emb|CAF27451.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
          Length = 467

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 266/469 (56%), Positives = 337/469 (71%), Gaps = 21/469 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DLGLS KV+ AV   GY  PTPIQ  TIP VLQR DV GIAQTGTGKTASFVLPMLT
Sbjct: 7   NFDDLGLSAKVIKAVKSVGYTVPTPIQSGTIPHVLQRRDVLGIAQTGTGKTASFVLPMLT 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQV +NF+KYG N+ L VALLIGG+ FE Q++KLER
Sbjct: 67  LLEKGRARARMPRTLILEPTRELAAQVEENFDKYGINHRLNVALLIGGVSFEQQDRKLER 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L PFTRQTL
Sbjct: 127 GVDVLIATPGRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPEIERICKLTPFTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+ K+++ FL +P  +EV   SSTA TI    V +  +   K A+L++L+ +
Sbjct: 187 FFSATMAPEITKLTKQFLHSPVTVEVTKASSTASTITQRLVKSGNKAWDKRAVLRELIHN 246

Query: 242 Q-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D +KN IIFCN+K+++  L  SL +  FSV A+HG++DQ SRM  L++FK+  I L+V
Sbjct: 247 EGDKLKNAIIFCNRKRDISELLRSLIRHNFSVGALHGDMDQYSRMSTLADFKDNKITLLV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFN+DVP  AE+YIHRIGRTGRA R GKAFT+V K D K+I+AI
Sbjct: 307 ASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANRSGKAFTIVTKTDQKYINAI 366

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E++  +K++WL GDLS+L    +K DI      ++ +P   K T   +++++  +QKS  
Sbjct: 367 EEISNEKIEWLTGDLSTLTTTDQKDDII----LKRKSPTSSKKTA--QKERSVHTQKS-- 418

Query: 421 PLKESE---------KISKLQQ--DIQENDADSLGFRGNMPAFMLPKNR 458
            LK+ +         K++ LQ+    +  +    GF  ++PAFML K R
Sbjct: 419 -LKDDKVGYMKATNNKVNLLQKCHSRKNKNHTPSGFGDDIPAFMLIKIR 466


>gi|188583653|ref|YP_001927098.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
 gi|179347151|gb|ACB82563.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
          Length = 501

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 259/499 (51%), Positives = 336/499 (67%), Gaps = 39/499 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS KV+ AV  AGY +PTPIQ + IP VL R DV GIAQTGTGKTA+F LPML
Sbjct: 1   MSFADLGLSDKVLQAVSAAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LE GRAR RMPRTLILEPTRELAAQV +NFE+YG N+ L VAL+IGG+ F  Q+ KL 
Sbjct: 61  TMLETGRARARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDHF RGKLL+  +E+LVIDEADRMLDMGFIP I+ I  +VPFTRQT
Sbjct: 121 RGTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++++++ FL NP+R+EV  PSSTA TIE   VAT A+  +K  +L+ L++
Sbjct: 181 LFFSATMPPEIERLADMFLHNPQRVEVARPSSTATTIEQRLVATGAEGHEKRKILRHLIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S D ++NGIIFCN+K++V  L  SL   GF+V A+HG++DQR+R   L  F+ G + L+V
Sbjct: 241 SADELQNGIIFCNRKRDVALLQKSLASHGFNVAALHGDMDQRARTAALDGFRSGEVPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFNFDVP+  E+Y+HRIGRTGRAGR G AFTL ++ D + + AI
Sbjct: 301 ASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRAGHAFTLASRADERSLAAI 360

Query: 361 EKLIEKKVDWLNGDLSSL------NPPLEKIDIAQHNHARKNN--------------PIP 400
           E LI + ++WL+GDLS++      + P  +    +   + K +              P  
Sbjct: 361 ESLIGRPIEWLDGDLSTVTDDTEGDEPRRRRGTRRARGSEKGSERGAEKAAERTAERPSE 420

Query: 401 QKSTGFDRRKKNYS--SQKSHIPLKESEKISKLQQDIQ----------------ENDADS 442
            +S G  R     S   +    P++E+E +S  ++  +                E+D   
Sbjct: 421 SRSRGGRRPASGRSRGEESGREPIREAEPVSPAREPARSAPDRARSERRPPRRDEDDDTP 480

Query: 443 LGFRGNMPAFML-PKNRGK 460
           +G   ++PAF+L P   GK
Sbjct: 481 VGLGSHVPAFLLKPTGFGK 499


>gi|110634124|ref|YP_674332.1| DEAD/DEAH box helicase-like [Mesorhizobium sp. BNC1]
 gi|110285108|gb|ABG63167.1| DEAD/DEAH box helicase-like protein [Chelativorans sp. BNC1]
          Length = 477

 Score =  508 bits (1309), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 244/380 (64%), Positives = 297/380 (78%), Gaps = 1/380 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGLSPKV+ AV DAGY  PTPIQ   IP  LQ  DV GIAQTGTGKTASFVLPML
Sbjct: 1   MTFSDLGLSPKVLAAVGDAGYTVPTPIQAGAIPHALQGKDVLGIAQTGTGKTASFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T LE+GRAR RMPRTLILEPTRELAAQV +NF KYGKN+ L +ALLIGG+ F+ Q KKLE
Sbjct: 61  TRLERGRARARMPRTLILEPTRELAAQVEENFVKYGKNHRLNIALLIGGVSFDEQEKKLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGADVLI TPGR+LDH  RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQT
Sbjct: 121 RGADVLIATPGRLLDHHERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+ K++E FLQ P R+EV+ P+STA  I    V + ++   K   L+ L++
Sbjct: 181 LFFSATMPPEITKLTEQFLQGPVRVEVSKPASTAVNITQRLVKSGSKPWAKREKLRDLIR 240

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++ D +KN IIFCN+K  V  L  SL +  F   A+HG++DQR+RM +L NF++G ++L+
Sbjct: 241 AEGDELKNAIIFCNRKTEVATLFRSLVRHEFDAGALHGDMDQRARMMMLENFRKGKLKLL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLDIPDV HVFNFDVP  +E+Y+HRIGRTGRAGR GKAFT+V + D K++D 
Sbjct: 301 VASDVAARGLDIPDVSHVFNFDVPTHSEDYVHRIGRTGRAGRSGKAFTIVTRADRKYVDG 360

Query: 360 IEKLIEKKVDWLNGDLSSLN 379
           IEKLI + ++WL+GDLS+L 
Sbjct: 361 IEKLIGQDIEWLDGDLSTLT 380


>gi|307946857|ref|ZP_07662192.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
 gi|307770521|gb|EFO29747.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
          Length = 471

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 237/374 (63%), Positives = 299/374 (79%), Gaps = 1/374 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS KV+ AV  +GY +PT IQ   IP VL+R DV GIAQTGTGKTASF LPML
Sbjct: 1   MTFKTLGLSDKVLSAVDASGYTEPTAIQAGAIPHVLERRDVLGIAQTGTGKTASFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV +NFEKYG N+ L VALLIGG+ F  Q+KKL+
Sbjct: 61  TLLEKGRARARMPRTLILEPTRELAAQVQENFEKYGTNHKLNVALLIGGVSFGEQDKKLD 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDHF RGKLL+  +E+LVIDEADRMLDMGFIP I+ I  L+PFTRQT
Sbjct: 121 RGTDVLIATPGRLLDHFERGKLLLQGVEVLVIDEADRMLDMGFIPDIERICKLIPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+Q+++E FLQNP R+EV   SST+E I H   A   +  +K A+L++LL+
Sbjct: 181 LFFSATMPPEIQRLTETFLQNPARVEVARTSSTSENISHYLRAAEGKDYEKRAVLRELLE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + + N I+FCN+K+++  L  SLE+ G+SV ++HG++DQR+RM +L NFK+GTI+L++
Sbjct: 241 GAEDLNNAIVFCNRKRDISTLFRSLERHGYSVGSLHGDMDQRTRMTMLDNFKKGTIKLLI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HVFN+DVP+ AE+Y+HRIGRTGRAGR G A+TLV+  D K++++I
Sbjct: 301 ASDVAARGLDIPEVSHVFNYDVPSHAEDYVHRIGRTGRAGRTGVAYTLVSGSDQKYLESI 360

Query: 361 EKLIEKKVDWLNGD 374
           EKLI + ++WL GD
Sbjct: 361 EKLIAQDIEWL-GD 373


>gi|118589105|ref|ZP_01546512.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Stappia aggregata IAM 12614]
 gi|118438434|gb|EAV45068.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Stappia aggregata IAM 12614]
          Length = 505

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 240/374 (64%), Positives = 297/374 (79%), Gaps = 1/374 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS KV+ AV  AGY +PT IQ   IP VL+R D+ GIAQTGTGKTASF LPML
Sbjct: 25  MAFNTLGLSEKVLAAVEAAGYKEPTAIQSGAIPQVLERRDILGIAQTGTGKTASFTLPML 84

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV +NF +YG N+ L +ALLIGG+ F  Q+KKL+
Sbjct: 85  TLLEKGRARARMPRTLILEPTRELAAQVEENFSRYGTNHKLNIALLIGGVSFSEQDKKLD 144

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQT
Sbjct: 145 RGTDVLIATPGRLLDHFERGKLLLQGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQT 204

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+Q+++E FLQNP RIEV   SSTAE +     AT ++  +K A L+ LL+
Sbjct: 205 LFFSATMPPEIQRLTETFLQNPARIEVAPTSSTAENVAQFLKATDSKDYEKRAALRDLLE 264

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + ++N I+FCN+K++V  +  SLE+  ++V A+HG++DQR+RM +L NF++GTI+L+V
Sbjct: 265 GAEDLQNAIVFCNRKRDVTTVYRSLERHEYNVGALHGDMDQRTRMMMLDNFRKGTIKLLV 324

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HVFNFDVP+ AE+Y+HRIGRTGRAGR G AFTLV  ED K++DAI
Sbjct: 325 ASDVAARGLDIPEVSHVFNFDVPSNAEDYVHRIGRTGRAGRKGTAFTLVTGEDQKYLDAI 384

Query: 361 EKLIEKKVDWLNGD 374
           + LI+K +DWL GD
Sbjct: 385 QTLIKKDIDWL-GD 397


>gi|163868127|ref|YP_001609331.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476]
 gi|161017778|emb|CAK01336.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476]
          Length = 467

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 262/464 (56%), Positives = 330/464 (71%), Gaps = 13/464 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS KV+ AV  AGY  PTPIQ +TIP VLQR DV GIAQTGTGKTASFVLPMLT+
Sbjct: 8   FDDLGLSEKVINAVKSAGYTVPTPIQSETIPHVLQRKDVLGIAQTGTGKTASFVLPMLTL 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRE+AAQV +NF+KYG N+ L VALLIGG+ FE Q++KLERG
Sbjct: 68  LEKGRARARMPRTLILEPTREIAAQVEENFDKYGINHRLNVALLIGGVSFEHQDRKLERG 127

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L PFTRQTL 
Sbjct: 128 ADVLIATPGRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPFTRQTLF 187

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+ K+++ FL +P  +EV   SSTA T+    V +  +   K A+L++L+Q++
Sbjct: 188 FSATMAPEITKLTKQFLHSPVSVEVTKASSTATTVTQRLVKSGNKSWDKRAVLRELIQNE 247

Query: 243 DT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + ++N IIFCN+K+++  L  SL K  F+V A+HG++DQ SRM  L++FK   + L+VA
Sbjct: 248 GSKLQNAIIFCNRKRDISELFRSLIKHNFNVGALHGDMDQYSRMNTLADFKNNKLTLLVA 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIP V HVFN+DVP  AE+YIHRIGRTGRA R GKAFT+V K D K+I+AIE
Sbjct: 308 SDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANRLGKAFTIVTKADQKYINAIE 367

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK-------NNPIPQKSTGFDRRKKNYS 414
           ++  +K++WLNGDLS+L+   +  D      + +         PI          K +Y 
Sbjct: 368 EMSHEKIEWLNGDLSTLSTDDQTEDSVVKKKSSQSSKKKAPKEPIAHPKKTVKENKIDYI 427

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
                  +K  EK S+ Q+  +  +   LGF  ++PAFML K R
Sbjct: 428 KN-----VKGKEKPSEQQRLRKNRNYAPLGFGDDIPAFMLIKTR 466


>gi|220923247|ref|YP_002498549.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219947854|gb|ACL58246.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
           ORS 2060]
          Length = 465

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 242/378 (64%), Positives = 293/378 (77%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+LGLS KV+ AV  AGY  PTPIQ + IP VL R DV G+AQTGTGKTA+F LPML
Sbjct: 1   MSFAELGLSEKVLQAVSAAGYTTPTPIQAQAIPHVLARRDVLGVAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T LE+GRAR RMPRTLILEPTRELAAQV +NFE+YG N+ L VALLIGG+ F  Q+ K+ 
Sbjct: 61  TRLEQGRARARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALLIGGVSFADQDAKIT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDHF RGKLL+  +E+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+Q+++++FL NP RIEV  P+STA TIE   VAT  +  +K   L++L++
Sbjct: 181 LFFSATMPPEIQRLADDFLHNPVRIEVARPASTASTIEQRLVATGGEGHQKRKTLRRLIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +KNGIIFCN+K++V  L  SL   GF+V A+HG++DQR+RM  L  F+ G I L+V
Sbjct: 241 GAEELKNGIIFCNRKRDVAQLQKSLANHGFTVAALHGDMDQRARMAALDAFRSGEIPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFNFDVP+ AE+Y+HRIGRTGRAGR+G AFTLVA+ D K + AI
Sbjct: 301 ASDVAARGLDIPAVSHVFNFDVPHHAEDYVHRIGRTGRAGRNGSAFTLVARGDEKALAAI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E LI + + W  GDL SL
Sbjct: 361 ESLIGQPIPWAEGDLGSL 378


>gi|254500508|ref|ZP_05112659.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
 gi|222436579|gb|EEE43258.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
          Length = 480

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 255/480 (53%), Positives = 333/480 (69%), Gaps = 23/480 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS KV+ AV  AGY  PT IQ   IP VL+R DV GIAQTGTGKTASF LPML
Sbjct: 1   MSFNTLGLSEKVLAAVDAAGYKDPTAIQAGAIPQVLERRDVLGIAQTGTGKTASFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV +NFE+YG N+ L VALLIGG+ F  Q+KKL+
Sbjct: 61  TLLEKGRARARMPRTLILEPTRELAAQVQENFERYGTNHKLNVALLIGGVSFAEQDKKLD 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQT
Sbjct: 121 RGTDVLIATPGRLLDHFERGKLLLQGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+Q+++E FLQNP RIEV   SSTAE +     A   +   K   L++LL+
Sbjct: 181 LFFSATMPPEIQRLTETFLQNPARIEVAPTSSTAENVTQQLKAAGGKDYDKRVALRELLE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + ++N I+FCN+K+++  L  SLE+  ++V A+HG++DQR+RM +L NF++G I+L+V
Sbjct: 241 GAEDLQNAIVFCNRKRDISTLFRSLERHEYNVGALHGDMDQRTRMMMLENFRKGAIKLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HVFN+DVP  AE+Y+HRIGRTGRAGR G A+TLV + D K++ AI
Sbjct: 301 ASDVAARGLDIPEVSHVFNYDVPINAEDYVHRIGRTGRAGRSGTAYTLVTESDQKYLRAI 360

Query: 361 EKLIEKKVDWLNGDLS-----------SLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           E+L  + ++W+   +              +    K D +  N A ++ P P+K  G  RR
Sbjct: 361 EELTNQSIEWVGESIDFEAAAAERKAKRRSSKTSKADSSNDNDAAQSKPAPKKR-GQSRR 419

Query: 410 KKNYSSQKSHIPLKESEKISKLQQ---------DIQENDADSLGFRGNMPAFMLPKNRGK 460
           K    + +S  P++E+   +++Q+           Q+N+A +     ++PAF+L   R K
Sbjct: 420 KTEEPAPES--PVEETRPTNRVQKISQKPANKPQKQDNNAPAFSEGVHIPAFLLRDPRAK 477


>gi|240850330|ref|YP_002971723.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bartonella
           grahamii as4aup]
 gi|240267453|gb|ACS51041.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bartonella
           grahamii as4aup]
          Length = 467

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 259/463 (55%), Positives = 326/463 (70%), Gaps = 13/463 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS KV+ AV  AGY  PTPIQ +TIP VLQR DV GIAQTGTGKTASFVLPMLT+
Sbjct: 8   FDDLGLSAKVINAVKSAGYTTPTPIQSETIPHVLQRKDVLGIAQTGTGKTASFVLPMLTL 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRE+AAQV +NF+KYG N+ L VALLIGG+ FE Q++KLERG
Sbjct: 68  LEKGRARARMPRTLILEPTREIAAQVEENFDKYGINHRLNVALLIGGVSFELQDRKLERG 127

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLI TPGR+LDH  RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L PFTRQTL 
Sbjct: 128 ADVLIATPGRLLDHCERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPFTRQTLF 187

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+ K+++ FL +P  +EV   SSTA TI    V + ++   K A+L++L+ ++
Sbjct: 188 FSATMAPEITKLTKQFLHSPVSVEVTKASSTATTITQRLVKSGSKSWDKRAVLRELIHNE 247

Query: 243 DT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              ++N IIFCN+K+++  L  SL +  FSV A+HG++DQ SRM  L++FK+  + L+VA
Sbjct: 248 GAELQNAIIFCNRKRDISELFRSLVRHNFSVGALHGDMDQYSRMSTLADFKDNKLTLLVA 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIP V HVFN+DVP  AE+YIHRIGRTGRA R GKAFT+V K D K+I+AIE
Sbjct: 308 SDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANRSGKAFTIVTKADQKYINAIE 367

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIA-------QHNHARKNNPIPQKSTGFDRRKKNYS 414
           ++  +K++WLNGDLS+L    +  DI              +  P+       +  K  Y 
Sbjct: 368 EMSNEKIEWLNGDLSTLIADDQTEDIVVKKKSSKSSKKTAQKEPVAHTKKSVEENKTEYI 427

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
              ++      EK S+ Q+  +  +   LGF   +PAFML K 
Sbjct: 428 KNANN-----KEKPSEQQRPRKNKNYTPLGFGDEIPAFMLIKT 465


>gi|319899018|ref|YP_004159111.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
 gi|319402982|emb|CBI76535.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
          Length = 454

 Score =  505 bits (1300), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 255/457 (55%), Positives = 331/457 (72%), Gaps = 12/457 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS KV+ A+   GY  PTPIQ  TIP +LQ+ DV GIAQTGTGKTASFVLPMLT+
Sbjct: 8   FDNLGLSKKVIKAIKSVGYTTPTPIQSATIPHILQKKDVLGIAQTGTGKTASFVLPMLTL 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR R+PRTLILEPTRELAAQV +N++KYG ++NL VALLIGG+ FE Q++KLERG
Sbjct: 68  LEKGRARARIPRTLILEPTRELAAQVKENYDKYGIHHNLNVALLIGGVSFEHQDRKLERG 127

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           AD+LI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L PFTRQTL 
Sbjct: 128 ADILIATPGRLLDHFERGKLLLVGVEILVIDEADRMLDMGFIPNIERICKLTPFTRQTLF 187

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+ ++++ FL +P  +E+    STA+TI    V + ++   K A+L++L+  +
Sbjct: 188 FSATMAPEITQLTKKFLHSPIYVEITKTFSTAKTITQRLVKSGSKPWDKRAILRELIHKE 247

Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D +KN IIFCN+KK++  L  SL K  FSV A+HG++DQ SR   L+NFK+  + L+VA
Sbjct: 248 GDELKNAIIFCNRKKDISELFRSLVKHNFSVGALHGDMDQHSRTNTLANFKDNKLTLLVA 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIP V HVFN+DVP  AE+YIHRIGRTGRA R+GKAFT+V K D K+I+AIE
Sbjct: 308 SDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRNGKAFTIVTKADEKYINAIE 367

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           ++ ++K++WLNGDLS+L        IA   H   N+ I +      R+K      K+   
Sbjct: 368 EISKEKIEWLNGDLSTL--------IA---HDETNDTISKAKPTKSRQKTAQKEHKTQTK 416

Query: 422 LKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
               ++ S  Q+  +  ++  +GF  ++PAFML KN+
Sbjct: 417 KMLKKQKSSNQRHEKNKNSIPIGFGNDIPAFMLIKNQ 453


>gi|328543973|ref|YP_004304082.1| DEAD/DEAH box helicase [polymorphum gilvum SL003B-26A1]
 gi|326413717|gb|ADZ70780.1| DEAD/DEAH box helicase domain protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 486

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 264/483 (54%), Positives = 331/483 (68%), Gaps = 23/483 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS KV+ AV  AGY +PT IQ   IP VL+R DV GIAQTGTGKTASF LPML
Sbjct: 1   MSFDSLGLSEKVLSAVKAAGYTEPTAIQAGAIPQVLERRDVLGIAQTGTGKTASFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV +NFEKYG N+ L VALLIGG+ F  Q++K++
Sbjct: 61  TLLEKGRARARMPRTLILEPTRELAAQVEENFEKYGVNHKLNVALLIGGVSFADQDRKID 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGADVLI TPGR+LDH  RGKL++  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQT
Sbjct: 121 RGADVLIATPGRLLDHVERGKLMLQGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+Q+++E FLQNP +IEV   SSTAE +    VA  +   +K A L++LL 
Sbjct: 181 LFFSATMPPEIQRLTETFLQNPAKIEVAPRSSTAENVTQYIVAAGSVDFEKRAKLRELLG 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +KN I+FCN+K++V  L  SLE+ GF+V  +HG++DQR+RM+ L +F++GT+ L+V
Sbjct: 241 EAEDLKNAIVFCNRKRDVTTLFRSLERHGFNVGCLHGDMDQRTRMQTLESFRKGTLTLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR G ++TLV  ED K++ AI
Sbjct: 301 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGVSYTLVTGEDSKYLSAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ---------HNHARKNNP--IPQKS-TGFDR 408
           EKLI K + WL   L       E+ +  +            A K  P   PQKS  G  R
Sbjct: 361 EKLINKSITWLGEPLDFEAAEAERKERRRAGKGTGRTARGGAEKREPGEKPQKSRAGEPR 420

Query: 409 R----------KKNYSSQKSHIPLKESEKISKLQQD-IQENDADSLGFRGNMPAFMLPKN 457
           R          K+  +   S    K +   S+ ++D   E D   +G   ++PAF+L + 
Sbjct: 421 RALDKDEGGAPKRERTRASSARDAKPARDRSEPRRDRSHETDEPVIGLGSHVPAFLLREP 480

Query: 458 RGK 460
           R K
Sbjct: 481 RPK 483


>gi|319407348|emb|CBI80993.1| ATP-dependent RNA helicase [Bartonella sp. 1-1C]
          Length = 501

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 261/469 (55%), Positives = 337/469 (71%), Gaps = 24/469 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGLS KV+ A+  AGY  PTPIQ +TIP +LQ+ DV GIAQTGTGKTASFVLPMLT
Sbjct: 39  NFDNLGLSKKVIKAIKSAGYTIPTPIQSRTIPYILQKKDVLGIAQTGTGKTASFVLPMLT 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR R+PRTLILEPTRELAAQV +NF+KYG N+NL VALLIGG+ FE Q++KLER
Sbjct: 99  LLEKGRARARIPRTLILEPTRELAAQVKENFDKYGVNHNLNVALLIGGVSFEHQDRKLER 158

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLI TPGR+LDHF RGKLL+  +EILVIDEADRML+MGFIP ++ I  + PFTRQTL
Sbjct: 159 GADVLIATPGRLLDHFERGKLLLVGVEILVIDEADRMLNMGFIPDVERICKVTPFTRQTL 218

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+ ++++ FL +P  IE+   SSTA+TI    V + ++   K A+L++L+Q+
Sbjct: 219 FFSATMAPEITQLTKQFLHSPVYIEITEASSTAKTITQRLVKSESKPCDKKAVLKELIQN 278

Query: 242 Q-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D +KN IIFCN+KK++  L   L K  FSV  +HG++DQ SR   L++FK     L++
Sbjct: 279 EGDELKNAIIFCNRKKDISELFQYLIKHNFSVGTLHGDMDQHSRTNTLASFKNNKFILLI 338

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFN+DVP  AE+YIHRIGRTGRA R GKAFT+V K D K+I AI
Sbjct: 339 ASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTKADEKYICAI 398

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI-PQKSTGFDRRKKNYSSQKSH 419
           E++ ++K++WLNGDLS+L    E     ++N   K  P   Q+ T    RK    +Q   
Sbjct: 399 EEISKEKIEWLNGDLSTLIAHDE-----ENNTVSKTKPTKSQQKTAQKERK----TQTKK 449

Query: 420 IPLKESEKISKLQ-QDIQENDADS----------LGFRGNMPAFMLPKN 457
           IP  E EK + ++ +D +E  ++           +GF  ++PAFML KN
Sbjct: 450 IP--EKEKSAYIETKDNKEKSSNKCHEKNKSPIPIGFGADIPAFMLIKN 496


>gi|49474271|ref|YP_032313.1| ATP-dependent RNA helicase [Bartonella quintana str. Toulouse]
 gi|49239775|emb|CAF26165.1| ATP-dependent RNA helicase [Bartonella quintana str. Toulouse]
          Length = 467

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 264/459 (57%), Positives = 326/459 (71%), Gaps = 3/459 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS KV+ AV  AGY  PTPIQ  TIP VLQR DV GIAQTGTGKTASFVLPMLT+
Sbjct: 8   FDDLGLSEKVIKAVKSAGYTAPTPIQSGTIPYVLQRKDVLGIAQTGTGKTASFVLPMLTL 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQV +NF+KYG N+ L VALLIGG+ FE Q++KLERG
Sbjct: 68  LEKGRARARMPRTLILEPTRELAAQVEENFDKYGINHRLNVALLIGGVSFEHQDRKLERG 127

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L PFTRQTL 
Sbjct: 128 ADVLIATPGRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPFTRQTLF 187

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+ K+++ FL  P  +EV   SSTA TI    V +  +   K A+L++L+ ++
Sbjct: 188 FSATMAPEITKLTKQFLHFPVTVEVTKASSTATTITQQLVKSGNKSWDKRAVLRELIHNE 247

Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D +KN IIFCN+K+++  L  SL +  FSV A+HG++DQ SRM  L++FK+  + L+VA
Sbjct: 248 GDELKNAIIFCNRKRDISELFRSLVRHNFSVGALHGDMDQYSRMSTLADFKDNKLTLLVA 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIP V HVFN+DVP  AE+YIHRIGRTGRA R GKAFT+V K D K+I AIE
Sbjct: 308 SDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANRSGKAFTIVTKADQKYISAIE 367

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK-NNPIPQKSTGFDRRKKNYSSQKSHI 420
           ++  +K++WLNGDLS+L    +  DI     + K +  I QK      +K     +  +I
Sbjct: 368 EMSNEKIEWLNGDLSTLTTDDQTDDILGKRQSPKLSKKISQKGRAIHTKKPLKDDKVGYI 427

Query: 421 PLKESEKISKLQQDIQENDAD-SLGFRGNMPAFMLPKNR 458
               +      Q   ++N +    GF  ++PAFML K R
Sbjct: 428 KTTNNNANPPEQHHHRKNKSYIPPGFGDDIPAFMLIKMR 466


>gi|260460697|ref|ZP_05808947.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259033274|gb|EEW34535.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 525

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 240/379 (63%), Positives = 296/379 (78%), Gaps = 1/379 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGLSPKV+ AV DAGY +PTPIQ   IP  L   DV GIAQTGTGKTASFVLPML
Sbjct: 1   MTFSDLGLSPKVLSAVTDAGYTQPTPIQAGAIPHALLGKDVLGIAQTGTGKTASFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T LEKGRAR RMPRTLILEPTRELAAQV +NF KYGKN+ L +ALLIGG+ F+ Q+KKLE
Sbjct: 61  TRLEKGRARARMPRTLILEPTRELAAQVEENFIKYGKNHKLNIALLIGGVSFDEQDKKLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGADVLI TPGR+LDH  RGKLL+N +EILVIDEADRMLDMGFIP I+ I  ++PFTRQT
Sbjct: 121 RGADVLIATPGRLLDHRERGKLLLNGVEILVIDEADRMLDMGFIPDIERICEMIPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+ K++E FL  P R+EV+  +S A  I    V + ++   K   L+ L++
Sbjct: 181 LFFSATMPPEITKLTEKFLHAPVRVEVSKAASAATNIIQRLVKSGSKPWDKRETLRNLIK 240

Query: 241 SQDT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++D  +KN IIFCN+K  V  L  SL K  F   A+HG++DQR+RM++L+NF++G ++ +
Sbjct: 241 AEDAELKNAIIFCNRKVEVSELFRSLLKYDFDAGALHGDMDQRARMQMLANFRDGKLRYL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLDIPDV HVFN+DVP  AE+Y+HRIGRTGRAGR GK+FT+  K D K+IDA
Sbjct: 301 VASDVAARGLDIPDVSHVFNYDVPIHAEDYVHRIGRTGRAGRSGKSFTIATKSDTKYIDA 360

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+LI  K++W +GDLS++
Sbjct: 361 IERLIGTKIEWHDGDLSTV 379


>gi|170742455|ref|YP_001771110.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168196729|gb|ACA18676.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
          Length = 482

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 237/378 (62%), Positives = 290/378 (76%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+LGLS KV+ AV  AGY  PTPIQ + IP VL R DV G+AQTGTGKTA+F LPML
Sbjct: 1   MSFAELGLSEKVLQAVSAAGYTTPTPIQAQAIPHVLARRDVLGVAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T LE+GRAR RMPRTLILEPTRELAAQV +NFE+YG N+ L VALLIGG+ F  Q+ K+ 
Sbjct: 61  TRLEQGRARARMPRTLILEPTRELAAQVVENFERYGTNHKLNVALLIGGVSFADQDAKIT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDHF RGKLL+  +E+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+Q+++++FL NP RIEV  P+STA TI    VAT  +  +K   L+ L++
Sbjct: 181 LFFSATMPPEIQRLADDFLHNPVRIEVARPASTASTIAQRLVATGGEGHEKRKTLRGLIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               ++NG+IFCN+K++V  L  SL   GF+V A+HG++DQR+RM  L  F+ G + L+V
Sbjct: 241 GAVELRNGLIFCNRKRDVAQLQRSLANHGFNVAALHGDMDQRARMAALDAFRSGEVPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFNFDVP+ AE+Y+HRIGRTGRAGR G AFTLV + D K + AI
Sbjct: 301 ASDVAARGLDIPAVSHVFNFDVPHHAEDYVHRIGRTGRAGRSGAAFTLVGRGDEKALAAI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E LI + + W +GDL+SL
Sbjct: 361 ESLIGQPIPWADGDLASL 378


>gi|121602645|ref|YP_988916.1| DEAD/DEAH box helicase domain-containing protein [Bartonella
           bacilliformis KC583]
 gi|120614822|gb|ABM45423.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain
           protein [Bartonella bacilliformis KC583]
          Length = 462

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 256/460 (55%), Positives = 326/460 (70%), Gaps = 6/460 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGLS KV+ AV  AGY  PTPIQ +TIP VLQ  DV GIAQTGTGKTASFVLPMLT
Sbjct: 7   NFDNLGLSAKVIKAVQLAGYTAPTPIQSETIPHVLQHKDVLGIAQTGTGKTASFVLPMLT 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRA+ RMPRTLILEPTRELAAQV +NF+KYG N+ L VALLIGG+ F+ Q++KLER
Sbjct: 67  LLEKGRAKARMPRTLILEPTRELAAQVKENFDKYGINHRLNVALLIGGVSFDHQDRKLER 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLI TPGR+LDHF RG LL+  +EILVIDEADRMLDMGFIP I+ I  L PFTRQTL
Sbjct: 127 GADVLIATPGRLLDHFERGTLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPFTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+ K++E FL +P  +E+   SSTA TI    V + ++   K A+L++L+  
Sbjct: 187 FFSATMAPEIIKLTEQFLHSPVCVEITKESSTARTITQRLVKSGSKAWHKRAVLRKLIHD 246

Query: 242 QD-TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++  +KN I+FCN+KK++  L  SL K  FSV  +HG++DQ SRM  L++FKE  + L+V
Sbjct: 247 ENKELKNAIVFCNRKKDISELFRSLVKYNFSVGVLHGDMDQHSRMNTLADFKENKLTLLV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFN+DVP  AE+YIHRIGRTGRA R GKAFT+V K D K+I AI
Sbjct: 307 ASDVAARGLDIPDVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTKNDQKYISAI 366

Query: 361 EKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           EK+ ++ ++WL+GDLS+L N  +  I +   +       I + +    +       +K++
Sbjct: 367 EKISKENIEWLDGDLSTLINDEVNDISLKTKSTKSPKKNIQKNAIKMPKDNAEICVKKTN 426

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRG 459
                S+K        +E  +  L F  ++PAFML K R 
Sbjct: 427 NKATSSDK----HHSQKEKTSPILAFGADIPAFMLVKTRS 462


>gi|13470499|ref|NP_102068.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
 gi|14021241|dbj|BAB47854.1| probable ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
          Length = 527

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 238/379 (62%), Positives = 295/379 (77%), Gaps = 1/379 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DLGLSPKV+ AV DAGY  PTPIQ   IP  L   D+ GIAQTGTGKTASFVLPML
Sbjct: 12  LTFSDLGLSPKVLSAVTDAGYTVPTPIQAGAIPHALLGKDILGIAQTGTGKTASFVLPML 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T LEKGRAR RMPRTLILEPTRELAAQV +NF KYGKN+ L +ALLIGG+ F+ Q+KKLE
Sbjct: 72  TRLEKGRARARMPRTLILEPTRELAAQVEENFVKYGKNHKLNIALLIGGVSFDEQDKKLE 131

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGADVLI TPGR+LDH  RGKLL+N +EILVIDEADRMLDMGFIP I+ I  ++PFTRQT
Sbjct: 132 RGADVLIATPGRLLDHRERGKLLLNGVEILVIDEADRMLDMGFIPDIERICEMIPFTRQT 191

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+ K++E FL  P R+EV+  +S A  I    V + ++   K   L+ L++
Sbjct: 192 LFFSATMPPEITKLTEKFLHAPVRVEVSKAASAATNITQRLVKSGSKPWDKRETLRNLIK 251

Query: 241 SQDT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++D  +KN IIFCN+K  V  L  SL K  F   A+HG++DQR+RM++L+NF++G ++ +
Sbjct: 252 AEDAELKNAIIFCNRKVEVSELFRSLLKYDFDAGALHGDMDQRARMQMLANFRDGKLRYL 311

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLDIPDV HVFN+DVP  AE+Y+HRIGRTGRAGR GK+FT+  K D K+IDA
Sbjct: 312 VASDVAARGLDIPDVSHVFNYDVPIHAEDYVHRIGRTGRAGRSGKSFTIATKSDTKYIDA 371

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+LI  K++W +GDLS++
Sbjct: 372 IERLIGNKIEWHDGDLSTV 390


>gi|319404344|emb|CBI77941.1| ATP-dependent RNA helicase [Bartonella rochalimae ATCC BAA-1498]
          Length = 466

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 256/458 (55%), Positives = 333/458 (72%), Gaps = 2/458 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGLS KV+ A+  AGY  PTPIQ +TIP +LQ+ DV GIAQTGTGKTASFVLPMLT
Sbjct: 7   NFDNLGLSKKVIKAIKSAGYTIPTPIQSRTIPHILQKKDVLGIAQTGTGKTASFVLPMLT 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR R+PRTLILEPTRELAAQV +NF+KYG N+NL VALLIGG+ FE Q++KLER
Sbjct: 67  LLEKGRARARIPRTLILEPTRELAAQVKENFDKYGVNHNLNVALLIGGVSFEHQDRKLER 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLI TPGR+LDHF RGKLL+  +EILVIDEADRML+MGFIP ++ I  + PFTRQTL
Sbjct: 127 GADVLIATPGRLLDHFERGKLLLVGVEILVIDEADRMLNMGFIPDVERICKVTPFTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+ ++++ FL +P  IE+   SSTA+TI    V + ++   K A+L++L+Q+
Sbjct: 187 FFSATMAPEIAQLTKQFLHSPVYIEITEASSTAKTITQRLVKSGSKSCDKKAVLKELIQN 246

Query: 242 Q-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D +KN IIFCN+KK++  L   L K  FSV  +HG++DQ SR   L++FK     L++
Sbjct: 247 EGDELKNAIIFCNRKKDISELFQYLIKHNFSVGTLHGDMDQHSRTNTLASFKNNKFILLI 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFN+DVP  AE+YIHRIGRTGRA R GKAFT+V K D K+I AI
Sbjct: 307 ASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTKADEKYIRAI 366

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS-H 419
           E++ ++K++WLNGDLS+L    E+ D        K+     +     + KK    +KS +
Sbjct: 367 EEISKEKIEWLNGDLSTLIAHDEENDTVSKTKPTKSQQKTAQKKRKTQTKKILEKEKSAY 426

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
           I  K++++ S  +   + N    +GF  ++PAFML KN
Sbjct: 427 IETKDNKEKSSNKCHEKNNSPIPIGFGDDIPAFMLIKN 464


>gi|319783267|ref|YP_004142743.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169155|gb|ADV12693.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 520

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 238/379 (62%), Positives = 294/379 (77%), Gaps = 1/379 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLSPKV+ AV DAGY +PTPIQ   IP  L   D+ GIAQTGTGKTASFVLPML
Sbjct: 1   MTFADLGLSPKVLSAVTDAGYTQPTPIQAGAIPHALLGKDILGIAQTGTGKTASFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T LE GRAR RMPRTLILEPTRELAAQV +NF +YGKN+ L +ALLIGG+ F+ QNKKLE
Sbjct: 61  TRLENGRARARMPRTLILEPTRELAAQVEENFIRYGKNHKLNIALLIGGVSFDEQNKKLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RGKLL+N +EILVIDEADRMLDMGFIP I+ I  ++PFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHRERGKLLLNGVEILVIDEADRMLDMGFIPDIERICEMIPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+ K++E FL  P R+EV+  +S A  I    V + ++   K   L+ L++
Sbjct: 181 LFFSATMPPEITKLTEKFLHAPVRVEVSKAASAATNITQRLVKSGSKPWDKRETLRNLIK 240

Query: 241 SQDT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++D  +KN IIFCN+K  V  L  SL K  F   A+HG++DQR+RM++L+NF++G ++ +
Sbjct: 241 AEDAELKNAIIFCNRKIEVSELFRSLLKYDFDAGALHGDMDQRARMQMLANFRDGKLRYL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLDIPDV HVFN+DVP  AE+Y+HRIGRTGRAGR GK+FT+  K D K+IDA
Sbjct: 301 VASDVAARGLDIPDVSHVFNYDVPIHAEDYVHRIGRTGRAGRSGKSFTIATKSDTKYIDA 360

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+LI  K++W +GDLS++
Sbjct: 361 IERLIGNKIEWHDGDLSTV 379


>gi|170747431|ref|YP_001753691.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653953|gb|ACB23008.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 527

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 233/378 (61%), Positives = 290/378 (76%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGLS KV+ AV  AGY +PTPIQ + IP VL R DV GIAQTGTGKTA+F LPML
Sbjct: 1   MPFSDLGLSEKVLNAVEAAGYTEPTPIQAEAIPHVLARRDVLGIAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LE GRAR RMPRTLILEPTRELAAQV +NF++YG N+ L VAL+IGG+ F  Q+ KL 
Sbjct: 61  TLLENGRARARMPRTLILEPTRELAAQVVENFDRYGTNHKLNVALIIGGVSFADQDAKLM 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDHF RGKLL+  +E+LVIDEADRMLDMGFIP I+ I  +VPFTRQT
Sbjct: 121 RGTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++++++ FL NP+R+EV  P+STA TI    VAT A+   K   L+ L++
Sbjct: 181 LFFSATMPPEIERLADMFLHNPQRVEVARPASTATTITQRLVATGAEGHAKRERLRGLIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++ +KNGIIFCN+K++V  L  SL   GF   A+HG++DQR+R   L  F+ G   L+V
Sbjct: 241 GEEDLKNGIIFCNRKRDVALLQKSLVSHGFDAAALHGDMDQRARTTALDGFRNGETALLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFNFDVP+  E+Y+HRIGRTGRAGR G A+TLVA +D + + AI
Sbjct: 301 ASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGTAYTLVAPDDARSLGAI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E LI + + WL+GDL+S+
Sbjct: 361 EALIGQPIPWLDGDLTSV 378


>gi|319405816|emb|CBI79446.1| ATP-dependent RNA helicase [Bartonella sp. AR 15-3]
          Length = 465

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 259/457 (56%), Positives = 330/457 (72%), Gaps = 5/457 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS KV+ A+  AGY  PTPIQ  TIP +LQ+ D+ GIAQTGTGKTASFVLPMLT+
Sbjct: 8   FDNLGLSKKVINAIKSAGYTIPTPIQSGTIPHILQKRDILGIAQTGTGKTASFVLPMLTL 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR R+PRTLILEPTRELA QV +NF+KYG N+NL VALLIGG+ FE Q++KLERG
Sbjct: 68  LEKGRARARIPRTLILEPTRELATQVQENFDKYGVNHNLNVALLIGGVSFEQQDRKLERG 127

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLI TPGR+LDHF  GKLL+  IEILVIDEADRMLDMGFIP I+ I  L PFTRQTL 
Sbjct: 128 ADVLIATPGRLLDHFEHGKLLLLGIEILVIDEADRMLDMGFIPNIERICKLTPFTRQTLF 187

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+ K+++ FL +P  IE+   SSTA+ I    V + ++   K A+L++L+  +
Sbjct: 188 FSATMAPEITKLTKQFLHSPVYIEITKASSTAKKITQRLVKSGSKPWDKRAILRELIHKE 247

Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D +KN IIFCN+KK++  L  SL K  FSV  +HG++DQ SR   L+NFK+  + L+VA
Sbjct: 248 GDELKNAIIFCNRKKDISELVRSLIKHNFSVGTLHGDMDQHSRTSTLANFKDNKLTLLVA 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+A+RGLDIP V HVFN+DVP  AE+YIHRIGRTGRA R GKAFT+V K D K+I AIE
Sbjct: 308 SDVASRGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTKADEKYISAIE 367

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKID-IAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           ++ ++K++WLNGDLS+L    E  D +AQ   AR      QK      +K     + +++
Sbjct: 368 EISQEKIEWLNGDLSTLIDYDETNDTVAQTKVARLQQKTAQKKHKTQTKKILEKEKLAYV 427

Query: 421 PLKES-EKISKLQQDIQENDADSLGFRGNMPAFMLPK 456
             K++ E++S   Q  ++     +GF  ++PAFML K
Sbjct: 428 KTKDNKEELS--NQCHEKKTPIPIGFGNDIPAFMLIK 462


>gi|254469871|ref|ZP_05083276.1| ATP-dependent RNA helicase [Pseudovibrio sp. JE062]
 gi|211961706|gb|EEA96901.1| ATP-dependent RNA helicase [Pseudovibrio sp. JE062]
          Length = 476

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 237/428 (55%), Positives = 315/428 (73%), Gaps = 10/428 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS KV+ AV  +GY +PT IQ   IP VL+R DV GIAQTGTGKTASF LPM+
Sbjct: 1   MSFSTLGLSEKVLAAVEASGYTEPTAIQAGAIPYVLERRDVLGIAQTGTGKTASFTLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV DNF +YG N+ L VALLIGG+ F  Q++KLE
Sbjct: 61  TLLEKGRARARMPRTLILEPTRELAAQVEDNFNRYGVNHKLNVALLIGGVSFAEQDRKLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGADVLI TPGR+LDHF RGKLL+  ++ILVIDEADRMLDMGFIP I+ I  L+PFTRQT
Sbjct: 121 RGADVLIATPGRLLDHFERGKLLLQGVDILVIDEADRMLDMGFIPDIERICKLIPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+Q++++ FLQNP ++EV   S+TAET+     A   +  +K A L++L++
Sbjct: 181 LFFSATMPSEIQRLTDTFLQNPAKVEVAKASTTAETVTQRIAAAEPEDYEKRAKLRELIE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + ++N I+FCN+K++V  L  SL +  FSV A+HG++DQRSRM +L NFK+G I+++V
Sbjct: 241 GAEDLQNAIVFCNRKRDVATLFRSLVRHEFSVGALHGDMDQRSRMTMLDNFKKGNIKILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFNFD+P +AE+Y+HRIGRTGRAGR G A ++V  +D K + AI
Sbjct: 301 ASDVAARGLDIPSVSHVFNFDLPIQAEDYVHRIGRTGRAGRDGTAISIVTGKDEKALQAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
            + I K+++W+ G+    + P+E+        +R+ +   QK     R+ K   ++    
Sbjct: 361 NETIGKELEWV-GEPVDFSAPVEE------KKSRRRSTRGQKDKNRSRKSK---AEAQEA 410

Query: 421 PLKESEKI 428
           P++E++ +
Sbjct: 411 PVQEADSV 418


>gi|298291343|ref|YP_003693282.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
 gi|296927854|gb|ADH88663.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
          Length = 499

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 241/412 (58%), Positives = 295/412 (71%), Gaps = 7/412 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS KV+ AV DAGY +PTPIQ + IP VL R DV G+AQTGTGKTA+F LPML
Sbjct: 1   MPFNELGLSDKVLSAVADAGYTEPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LE+GRAR RMPRTLILEPTRELAAQV +NF KYGKN+ L VALLIGG+ F  Q+ KL 
Sbjct: 61  TMLEQGRARARMPRTLILEPTRELAAQVEENFTKYGKNHKLNVALLIGGVSFGDQDAKLL 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG+LL++ IEILVIDEADRMLDMGFIP I+ +  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHVERGRLLLSGIEILVIDEADRMLDMGFIPDIERVCKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+Q++   FL NP ++E + PSSTA  I    VA   +   K   L++L+ 
Sbjct: 181 LFFSATMPPEIQRLVAQFLSNPVQVEASRPSSTAANITQFLVACGKEDFAKRETLRELIN 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S D ++NGIIFCN+K  V  +  SL++ GF+V A+HG++DQRSRM+ L  F+ G   L+V
Sbjct: 241 SADNLQNGIIFCNRKSEVAVVHKSLKRHGFNVVALHGDMDQRSRMQALDQFRTGEANLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFN+D P+ AE+Y+HRIGRTGRAGR G AFTLV   D K + AI
Sbjct: 301 ASDVAARGLDIPAVSHVFNYDTPHHAEDYVHRIGRTGRAGRSGAAFTLVTPADTKSLAAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           EKLI + +DW  G      PP E          R++ P   +  G +R +K 
Sbjct: 361 EKLIGRSIDWREGSSLDALPPSEA-------RPRRDRPERGERKGGERGRKG 405


>gi|154248677|ref|YP_001419635.1| DEAD/DEAH box helicase domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154162762|gb|ABS69978.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus
           Py2]
          Length = 537

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 229/380 (60%), Positives = 287/380 (75%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS KV+ AV D GY +PTPIQ + IP VL R DV G+AQTGTGKTA+F LPML
Sbjct: 1   MSFSELGLSEKVLAAVADTGYTQPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LE GRAR RMPRTLILEPTRELAAQV +NF +YGKN+ L VALLIGG+ F  Q+ KL 
Sbjct: 61  TLLEHGRARARMPRTLILEPTRELAAQVEENFTRYGKNHKLNVALLIGGVSFGDQDSKLL 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG+LL++ IE+LVIDEADRMLDMGFIP I+ +  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERVCKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+Q++   FL NP R+EV+ P+STA T+ H  VA+  +   K  +L++L++
Sbjct: 181 LFFSATMPPEIQRLVSQFLSNPVRVEVSKPASTAATVTHMLVASGREDYDKREVLRELIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D ++NGIIFCN+K++V  L  SL+K GF+  A+HG++DQ +R+K L  F+ G   L+V
Sbjct: 241 NCDGLQNGIIFCNRKRDVAVLHRSLQKHGFNAVALHGDMDQHARIKALDQFRSGEATLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFN+DVP+ +E+Y+HR+GRTGRAGR G A+TLV   D K + AI
Sbjct: 301 ASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRVGRTGRAGRAGTAYTLVTHTDAKSVTAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNP 380
           EKLI   V W    L    P
Sbjct: 361 EKLIGNAVPWHGAPLGDAPP 380


>gi|296446324|ref|ZP_06888270.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
 gi|296256225|gb|EFH03306.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
          Length = 419

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 240/383 (62%), Positives = 285/383 (74%), Gaps = 2/383 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS KV+ AV  +GY +PTPIQ + IP  LQ  D+ GIAQTGTGKTA+FVLPML
Sbjct: 1   MTFDELGLSQKVLAAVETSGYTQPTPIQEQAIPPALQGRDILGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE+GRAR RMPRTLILEPTRELAAQV  +F KYG N+ L VALLIGG+ F  Q  K+ 
Sbjct: 61  CRLEQGRARARMPRTLILEPTRELAAQVEASFAKYGANHKLNVALLIGGMAFGDQEAKIM 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGADVLI TPGR+LD F+RGKLL+ NIEILVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGADVLIATPGRLLDFFDRGKLLLTNIEILVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+ +++E FL NP RIEV   SSTA TI    VAT+  +++K   L++LL+
Sbjct: 181 LFFSATMPPEITRLTEAFLHNPVRIEVARASSTAATIRQALVATHG-HAEKRETLRRLLR 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  KN IIFCN+K++V  L  SL+K GFS  A+HG++DQ +RM  L  FK G + L+V
Sbjct: 240 GAENFKNAIIFCNRKRDVAILHRSLDKHGFSAGALHGDMDQPARMASLDAFKNGDVALLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SD+AARGLDIPDV HVFNFDVP  +E+Y+HRIGRTGRAGR G A TLV  ED K++D I
Sbjct: 300 CSDVAARGLDIPDVSHVFNFDVPTHSEDYVHRIGRTGRAGRSGTAVTLVTGEDRKYLDQI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           E LI  K+DW    L  L PP E
Sbjct: 360 ETLIGNKIDWEGPRLDEL-PPAE 381


>gi|299133793|ref|ZP_07026987.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
 gi|298591629|gb|EFI51830.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
          Length = 472

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 244/476 (51%), Positives = 314/476 (65%), Gaps = 21/476 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS KV+ AV   GY  PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MSFSNLGLSDKVLAAVAATGYTTPTPIQEQAIPHVLDRRDVLGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV +NF++YG    L VALLIGG+ F  Q+ KL 
Sbjct: 61  TLLEKGRARARMPRTLILEPTRELAAQVKENFDRYGVGQKLNVALLIGGVSFGDQDAKLG 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RGKLLM  +E+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHTERGKLLMTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM  E+++++E FL NP ++EV+ P+STA T+    ++T  +  +K  LL+QLL+
Sbjct: 181 LFFTATMPAEIRRITETFLHNPVKVEVSKPASTAVTVTQFQISTGKESHEKRELLRQLLR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +KN IIFCN+K+ V  L  SL+K GF   A+HG++DQ +RM  L  F++G + L+V
Sbjct: 241 DAKDLKNAIIFCNRKREVAILHKSLQKHGFGAAALHGDMDQSARMAALEQFRKGELPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HVFNFDVP+  ++Y+HRIGRTGRAGR G A ++V+  D K I AI
Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRLGTAISIVSPLDQKSILAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS-- 418
           EKLI + +    G   +    +E   +       +N P P+KS    +R K+   +K+  
Sbjct: 361 EKLIGQSIPHAEGHARTAAASVEADAVIA-----ENGPAPRKSRRGGQRSKHRDREKTSA 415

Query: 419 --------------HIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
                           P      + +L       D    G   ++PAF+L   R +
Sbjct: 416 KPAAKPAPSPKSSARTPAAPPPSLGRLPMAAATQDHVEPGDHSHLPAFLLRPVRAR 471


>gi|182677108|ref|YP_001831254.1| DEAD/DEAH box helicase domain-containing protein [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182632991|gb|ACB93765.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 484

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 247/470 (52%), Positives = 315/470 (67%), Gaps = 23/470 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS KV+ AV   GY  PTPIQ + IP  L   D+ GIAQTGTGKTA+F LPML
Sbjct: 1   MTFNELGLSEKVLQAVAATGYTSPTPIQAEAIPHALAGRDILGIAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + LE+GRAR RMPRTLILEPTRELAAQV ++F +YG N+ L VALLIGG+ F  Q  K+ 
Sbjct: 61  SRLEQGRARARMPRTLILEPTRELAAQVEESFARYGINHKLNVALLIGGVSFAEQENKIM 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGADVLI TPGR+LD   RGKLL+  IEILVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGADVLIATPGRLLDFSERGKLLLTGIEILVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+ +++E FL NP RIEV   SSTA TI    VA+ A    K   L+QL++
Sbjct: 181 LFFSATMPPEITRLTETFLHNPVRIEVARASSTATTITQGLVAS-AHGPAKRETLRQLIR 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +KN IIFCN+K++V  L  SL+K GFS  A+HG++DQR+RM  L  FK G + L+V
Sbjct: 240 GAENLKNAIIFCNRKRDVAVLHKSLQKHGFSAGALHGDMDQRARMTSLDAFKSGDVNLLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR G A ++V   D K++D I
Sbjct: 300 CSDVAARGLDIPDVSHVFNFDVPTHAEDYVHRIGRTGRAGRSGVALSIVTSADRKYVDEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN-------NPIPQKSTGFDRRKKNY 413
           EKLI +K+DW  G  ++L+    +  +A     R+         P PQ+    + R    
Sbjct: 360 EKLIARKIDWQGG--ATLDDVAAEESVAHATETRRGRGGKIAKRPAPQE----EARPSQA 413

Query: 414 SSQ--KSHIPLKESEKIS-------KLQQDIQENDADSLGFRGNMPAFML 454
           +++  KS  P++E            + ++  +++D   +G   ++P F+L
Sbjct: 414 AARGPKSRRPVEEGRSDGRKPSNPPRSRRSYEDDDVPVVGLGDHVPMFLL 463


>gi|148255365|ref|YP_001239950.1| putative ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1]
 gi|146407538|gb|ABQ36044.1| Putative ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1]
          Length = 478

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/374 (60%), Positives = 285/374 (76%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS KV+ AV   GY  PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MSFSNLGLSDKVLAAVAATGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           TILEKGRAR RMPRTLILEPTRELAAQV +NF++YG    L VALLIGG+ F  Q+ KL 
Sbjct: 61  TILEKGRARARMPRTLILEPTRELAAQVKENFDRYGAGQKLNVALLIGGVSFGDQDTKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG LL+  +E+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM  E+++V+E FL NP+++EV+ P++TA T+    V    +  +K  +L++LL+
Sbjct: 181 LFFTATMPPEIRRVTETFLHNPQKVEVSRPATTAVTVTQLQVPGGREAHQKREVLRKLLR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +KN IIFCN+K++V  L  SL+K GFSVCA+HG++DQ +RM  L  F++G + L+V
Sbjct: 241 EAKDLKNAIIFCNRKRDVAILHKSLQKHGFSVCALHGDMDQSARMAALDQFRKGELPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HVFNFDVP+ +++Y+HRIGRTGRAGR G A ++V+  D K I AI
Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHSDDYVHRIGRTGRAGRTGTAISIVSPADQKSITAI 360

Query: 361 EKLIEKKVDWLNGD 374
           EKLI + +    GD
Sbjct: 361 EKLIGQSIPKAEGD 374


>gi|158424139|ref|YP_001525431.1| helicase [Azorhizobium caulinodans ORS 571]
 gi|158331028|dbj|BAF88513.1| helicase [Azorhizobium caulinodans ORS 571]
          Length = 582

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 225/384 (58%), Positives = 285/384 (74%), Gaps = 1/384 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS KV+ AV   GY  PTPIQ + IP VL R DV G+AQTGTGKTA+F LPML
Sbjct: 64  MSFSELGLSEKVLSAVAATGYTTPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPML 123

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LE+GRAR RMPRTLILEPTRELAAQV +NF +YGKN+ L VALLIGG+ F  Q+ KL 
Sbjct: 124 TLLEQGRARARMPRTLILEPTRELAAQVEENFVRYGKNHKLNVALLIGGVSFGDQDTKLL 183

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG+LL++ IE+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 184 RGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERICKLVPFTRQT 243

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+Q++   FL NP R+EV+ P+S   +I    VA+  +  +K   L++L++
Sbjct: 244 LFFSATMPPEIQRLVSQFLSNPVRVEVSKPASANTSITQLLVASGREDYEKRETLRELIR 303

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D ++NGI+FCN+K++V  +  SL+K GF+V  +HG++DQ +R + L  F+ G   L+V
Sbjct: 304 NADQLQNGIVFCNRKRDVAVVHRSLQKHGFNVVCLHGDMDQHARTQALDQFRTGEATLLV 363

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFN+DVP+ +E+Y+HRIGRTGRAGR G A  LV  +D K + AI
Sbjct: 364 ASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRIGRTGRAGRTGTAIMLVTHDDAKSLAAI 423

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           EKLI   + W  G+     PP EK
Sbjct: 424 EKLIGNAIPW-QGEPLGEAPPREK 446


>gi|323138624|ref|ZP_08073691.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
 gi|322396112|gb|EFX98646.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
          Length = 496

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/383 (59%), Positives = 281/383 (73%), Gaps = 1/383 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS KV+ AV  +GY  PTPIQ + IP  LQ  D+ GIAQTGTGKTA+F LPML
Sbjct: 1   MTFDELGLSQKVLAAVQASGYTTPTPIQAQAIPPALQGRDILGIAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + LE+GRAR R+PRTLILEPTRELAAQV ++F KYG N+ L VALLIGG+ F  Q  K+ 
Sbjct: 61  SRLEQGRARARVPRTLILEPTRELAAQVEESFAKYGANHKLNVALLIGGVSFGDQEAKIM 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGADVLI TPGR+LD F+RGKLL+  IEILVIDEADRMLDMGFIP I+ +  LVPFTRQT
Sbjct: 121 RGADVLIATPGRLLDFFDRGKLLLTGIEILVIDEADRMLDMGFIPDIERVCKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+ +++E FL NP RIEV   S+TA TI    VA+     K+   L+ L++
Sbjct: 181 LFFSATMPPEITRLTEAFLHNPIRIEVARASTTASTIRQALVASRGHADKR-ETLRNLIR 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +KN I+FCN+K++V  L  SL K GF   A+HG++DQ +RM  L  FK G + ++V
Sbjct: 240 GAENLKNAIVFCNRKRDVAILHRSLVKHGFPAGALHGDMDQLARMASLDAFKNGDVAILV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SD+AARGLDIPDV HVFNFDVP  +E+Y+HRIGRTGRAGR G A T+V ++D K+ID I
Sbjct: 300 CSDVAARGLDIPDVSHVFNFDVPTHSEDYVHRIGRTGRAGRSGVAMTIVTEDDTKYIDQI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           + LI K ++W      +L PP+E
Sbjct: 360 QSLIGKAIEWEGPGFDALPPPME 382


>gi|146340507|ref|YP_001205555.1| putative ATP-dependent RNA helicase [Bradyrhizobium sp. ORS278]
 gi|146193313|emb|CAL77329.1| Putative ATP-dependent RNA helicase [Bradyrhizobium sp. ORS278]
          Length = 476

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/374 (59%), Positives = 286/374 (76%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS KV+ AV   GY  PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MSFSNLGLSDKVLAAVAATGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           TILEKGRAR RMPRTLILEPTRELAAQV +NF++YG    L VALLIGG+ F  Q+ KL 
Sbjct: 61  TILEKGRARARMPRTLILEPTRELAAQVKENFDRYGAGQKLNVALLIGGVSFGDQDAKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG LL+  +E+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM  E++++++ FL NP+++EV+ P++TA T+    V +  +  +K  +L++LL+
Sbjct: 181 LFFTATMPPEIRRITDAFLHNPQKVEVSKPATTAVTVTQLQVPSGREAHQKREVLRRLLR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +KN IIFCN+K++V  +  SL+K GFSV A+HG++DQ +RM  L  F++G + L+V
Sbjct: 241 EAKDLKNAIIFCNRKRDVAIVHKSLQKHGFSVGALHGDMDQSARMAALDQFRKGELPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HVFNFDVP+ +++Y+HRIGRTGRAGR G A ++V+  D K + AI
Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHSDDYVHRIGRTGRAGRTGTAISIVSPPDQKSVAAI 360

Query: 361 EKLIEKKVDWLNGD 374
           EKLI + +  + GD
Sbjct: 361 EKLIGQSIPTIEGD 374


>gi|115524965|ref|YP_781876.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris BisA53]
 gi|115518912|gb|ABJ06896.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           BisA53]
          Length = 517

 Score =  465 bits (1196), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/426 (55%), Positives = 296/426 (69%), Gaps = 5/426 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS KV+ AV  +GY  PTPIQ + IP V+ R DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MSFTHLGLSDKVLAAVAASGYTTPTPIQDQAIPHVMARRDVLGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV + F+KYG    L VALLIGG+ F  Q+ KL 
Sbjct: 61  TLLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDIKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG LL+  +E+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM  E+++++E FL NP +IEV+ P+STA T+    VA   +  +K   L+QLL+
Sbjct: 181 LFFTATMPTEIRRITEAFLHNPVKIEVSKPASTAVTVTQSQVAAGREPHQKRETLRQLLR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               ++N IIFCN+K+ V  L  SL K GFSV A+HG++DQ +R   L  F++G + L+V
Sbjct: 241 EASDLQNAIIFCNRKREVALLAKSLLKHGFSVGALHGDMDQSARTAALEAFRKGELPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HVFNFDVP+  ++Y+HRIGRTGRAGR G A TLVA  D K + AI
Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRAGTAVTLVAPPDGKSVAAI 360

Query: 361 EKLIEKKVDWLN-GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           EKLI +++  +  GD     PP  +++  +   AR+     +      R +      ++ 
Sbjct: 361 EKLIGQEIPRVQLGD----APPETEVEGEREAPARRGRGSRKSGESRPRTEGRAPRAEAR 416

Query: 420 IPLKES 425
            P  ES
Sbjct: 417 TPRGES 422


>gi|316934368|ref|YP_004109350.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315602082|gb|ADU44617.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 469

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/368 (60%), Positives = 277/368 (75%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS KV  AV  AGYV PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MSFTNLGLSTKVQAAVAAAGYVSPTPIQQQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV + F+KYG    L VALLIGG+ F  Q+ KL 
Sbjct: 61  TLLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG LL+  +E+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVEMLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM  E+++++E FL NP++IEV+ P+STA T+    V    +  +K   L+ L++
Sbjct: 181 LFFTATMPTEIRRITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRHLIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +KN IIFCN+K+ V  L  SL++ GFSV A+HG++DQ +RM  L  F++G + ++V
Sbjct: 241 GATDLKNAIIFCNRKREVALLARSLQRHGFSVGALHGDMDQTARMAALEAFRKGELPILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HVFNFDVP+  ++Y+HRIGRTGRAGR G A T+VA  D K + AI
Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRAGTALTIVAPSDQKSMAAI 360

Query: 361 EKLIEKKV 368
           EKLI + +
Sbjct: 361 EKLIGQDI 368


>gi|91976935|ref|YP_569594.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
 gi|91683391|gb|ABE39693.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
          Length = 500

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/368 (60%), Positives = 281/368 (76%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS KV+ AV  +GY  PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MSFSNLGLSDKVLAAVAASGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV + F+KYG    LTVALLIGG+ F  Q+ KL 
Sbjct: 61  TMLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQKLTVALLIGGVSFGDQDVKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG LL+  +E+LVIDEADRMLDMGFIP I+ +  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERVCKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM  E+++++E FL NP++IEV+ P+STA T+    V    +  +K   L++L++
Sbjct: 181 LFFTATMPPEIRRITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRRLIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   ++N IIFCN+K+ V  L  SL+K GFSV A+HG++DQ +R   L  F++G + ++V
Sbjct: 241 AATDLQNAIIFCNRKREVALLAKSLQKHGFSVGALHGDMDQSARTAALDQFRKGELPILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HVFNFDVP+  ++Y+HR+GRTGRAGR G A ++VA  D K I AI
Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRVGRTGRAGRLGTAISIVAPSDQKSIAAI 360

Query: 361 EKLIEKKV 368
           EKLI K++
Sbjct: 361 EKLIGKEI 368


>gi|86750102|ref|YP_486598.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
 gi|86573130|gb|ABD07687.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
          Length = 516

 Score =  461 bits (1187), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/372 (59%), Positives = 281/372 (75%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS KV+ AV  +GY  PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MSFNNLGLSDKVLAAVAASGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV + F+KYG    L VALLIGG+ F  Q+ KL 
Sbjct: 61  TMLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG LL+  +E+L+IDEADRMLDMGFIP I+ +  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVEMLIIDEADRMLDMGFIPDIERVCKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM  E+++V+E FL NP++IEV+ P+STA T+    VA   +  +K   L+ L++
Sbjct: 181 LFFTATMPPEIRRVTETFLHNPEKIEVSKPASTAVTVAQSQVACGREPHEKRETLRSLIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   ++N IIFCN+K+ V  L  SL+K GFSV A+HG++DQ +R   L  F++G + ++V
Sbjct: 241 AATDLQNAIIFCNRKREVALLAKSLQKHGFSVGALHGDMDQSARTAALDQFRKGELPILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HVFNFDVP+  ++Y+HR+GRTGRAGR G A ++VA  D K I AI
Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRVGRTGRAGRLGTAISIVAPSDQKSIAAI 360

Query: 361 EKLIEKKVDWLN 372
           EKLI K++  ++
Sbjct: 361 EKLIGKEIPRVD 372


>gi|217977138|ref|YP_002361285.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
 gi|217502514|gb|ACK49923.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
          Length = 494

 Score =  461 bits (1187), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/373 (60%), Positives = 275/373 (73%), Gaps = 1/373 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS KV+ AV  +GY  PTPIQ + IP  L   DV GIAQTGTGKTA+F LPML
Sbjct: 1   MTFEELGLSAKVLQAVEASGYTTPTPIQAQAIPFALTGRDVLGIAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + LE+GRAR RMPRTLILEPTRELAAQV ++F +YG N+ + VALLIGG+ F  Q  K+ 
Sbjct: 61  SRLEQGRARARMPRTLILEPTRELAAQVEESFVRYGVNHKVNVALLIGGVSFADQEAKIT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGADVLI TPGR+LD   RGKLL+  IEILVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGADVLIATPGRLLDFAERGKLLLTGIEILVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+ +++E FL NP R+EV   SSTA TI    +A+    +K+   L++LL+
Sbjct: 181 LFFSATMPPEITRLTETFLHNPARVEVARASSTATTITQGLIASAPGPAKR-ETLRRLLR 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S    KN IIFCN+K++V  L  SL   GF+  A+HG++DQR+RM  L  FK G + L+V
Sbjct: 240 SAADFKNAIIFCNRKRDVALLHKSLLTHGFNAGALHGDLDQRARMASLDAFKTGEVALIV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SD+AARGLDIPDV HV NFDVP  AE+Y+HRIGRTGRAG+ G A T+V K D KHI  I
Sbjct: 300 CSDVAARGLDIPDVSHVLNFDVPTHAEDYVHRIGRTGRAGKSGVAITIVTKADQKHIAEI 359

Query: 361 EKLIEKKVDWLNG 373
           EKLI + +D+L+G
Sbjct: 360 EKLIGRSIDFLDG 372


>gi|39935543|ref|NP_947819.1| ATP-dependent RNA helicase [Rhodopseudomonas palustris CGA009]
 gi|192291134|ref|YP_001991739.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
 gi|39649396|emb|CAE27918.1| possible ATP-dependent RNA helicase [Rhodopseudomonas palustris
           CGA009]
 gi|192284883|gb|ACF01264.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 472

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 221/368 (60%), Positives = 278/368 (75%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS KV  AV  AGYV PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MSFSNLGLSEKVQAAVAAAGYVSPTPIQQQAIPHVLARKDVLGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV + F+KYG    L VALLIGG+ F  Q+ KL 
Sbjct: 61  TMLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG LL+  +E+L+IDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVEMLIIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM  E+++++E FL NP++IEV+ P+STA T+    V    +  +K   L++L++
Sbjct: 181 LFFTATMPTEIRRITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRRLIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +KN IIFCN+K+ V  L  SL++ GFSV A+HG++DQ +R   L  F++G + ++V
Sbjct: 241 GATDLKNAIIFCNRKREVALLAKSLQRHGFSVGALHGDMDQTARTAALEAFRKGDLPILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HVFNFDVP+  ++Y+HRIGRTGRAGR G A T+VA  D K + A+
Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRTGTAVTIVAPSDQKSMAAV 360

Query: 361 EKLIEKKV 368
           EKLI + +
Sbjct: 361 EKLIGQAI 368


>gi|85716308|ref|ZP_01047281.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
 gi|85696824|gb|EAQ34709.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
          Length = 482

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/368 (60%), Positives = 277/368 (75%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS KV+ AV  AGY  PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MSFSHLGLSDKVLAAVAAAGYTSPTPIQDQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV + F+KYG    L VALLIGG+ F  Q+ KL 
Sbjct: 61  TLLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG LL+  +E+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM +E+++V++ FL NP+RIEV+ P++TA T+    V+   +  +K  LL+ LL+
Sbjct: 181 LFFTATMPNEIRRVTDAFLHNPQRIEVSRPATTAATVTQSQVSCSREPHEKRELLRHLLR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +KN IIFCN+K++V  +  SL+K GFSV A+HG++DQ +R   L  F++G + L+V
Sbjct: 241 EAKELKNAIIFCNRKRDVAIVYKSLQKHGFSVGALHGDMDQSARTASLDQFRKGELPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HV NFDVP+  ++Y+HRIGRTGRAGR G A T+V   D K + AI
Sbjct: 301 ASDVAARGLDIPEVSHVLNFDVPHHPDDYVHRIGRTGRAGRTGTAITIVCPADFKSLAAI 360

Query: 361 EKLIEKKV 368
           EKL  + +
Sbjct: 361 EKLTGQPI 368


>gi|90424330|ref|YP_532700.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
 gi|90106344|gb|ABD88381.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
          Length = 503

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/368 (60%), Positives = 275/368 (74%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS KV+ AV   GY  PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML
Sbjct: 8   MSFTHLGLSDKVLAAVAATGYTTPTPIQDQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 67

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV + F+KYG    L VALLIGG+ F  Q+ KL 
Sbjct: 68  TLLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDIKLT 127

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG LL+  +E+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 128 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 187

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM +E+++++E FL NP +IEV+ P+STA T+    VAT  +  +K   L++LL+
Sbjct: 188 LFFTATMPNEIRRITETFLHNPVKIEVSKPASTAVTVTQSQVATGREPHEKRETLRRLLR 247

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               ++N IIFCN+K+ V  L  SLEK GFSV A+HG+++Q +R   L  F++G + ++V
Sbjct: 248 DAKDLQNAIIFCNRKREVALLAKSLEKHGFSVGALHGDMEQSARTAALDQFRKGELPILV 307

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HV NFDVP+  ++Y+HRIGRTGRAGR G A ++V   D K I AI
Sbjct: 308 ASDVAARGLDIPEVSHVINFDVPHHPDDYVHRIGRTGRAGRAGTAISIVCPSDTKSIAAI 367

Query: 361 EKLIEKKV 368
           EKLI + +
Sbjct: 368 EKLIGQDI 375


>gi|209885134|ref|YP_002288991.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
           carboxidovorans OM5]
 gi|209873330|gb|ACI93126.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
           carboxidovorans OM5]
          Length = 469

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/377 (58%), Positives = 276/377 (73%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS KV+ AV   GY  PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MSFSHLGLSEKVLAAVAATGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV +N + Y     L +ALLIGG+ F  Q+ KL 
Sbjct: 61  TMLEKGRARARMPRTLILEPTRELAAQVQENIDHYCAGQKLNIALLIGGMSFGDQDAKLM 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+LI TPGR+LDH  RGKLL+  +E+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGVDILIATPGRLLDHTERGKLLLTGVEMLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM  E+++++E FL NP+++E++ P+STA T+    +   +    K  LL+QLL+
Sbjct: 181 LFFTATMPPEIRRITETFLHNPEKVEISRPASTATTVTQSQIGIGSDAHAKRELLRQLLR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +KN IIFCN+K++V  L  SL+K GF   A+HG++DQ +RM  L  F++G + L+V
Sbjct: 241 DAKDLKNAIIFCNRKRDVAILHKSLQKHGFGAAALHGDMDQSARMTALDQFRKGELPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HVFNFDVP   ++Y+HRIGRTGRAGR G A ++V+  D K I AI
Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPYHPDDYVHRIGRTGRAGRLGTAISIVSPTDQKSILAI 360

Query: 361 EKLIEKKVDWLNGDLSS 377
           EKLI + +    G   S
Sbjct: 361 EKLIGQSIPHAEGSAPS 377


>gi|312113545|ref|YP_004011141.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100]
 gi|311218674|gb|ADP70042.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 494

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/380 (57%), Positives = 285/380 (75%), Gaps = 1/380 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS KV+ A+  AGY  PTPIQ + IP  L+  DV GIAQTGTGKTASFVLP+L
Sbjct: 1   MTFKDLKLSDKVLAAIDAAGYTTPTPIQAQAIPFALEGRDVVGIAQTGTGKTASFVLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +LE+GRAR RMPR+LILEPTRELAAQVA+ FE  G  + LTVALLIGG+ F+ Q KKLE
Sbjct: 61  NMLEQGRARARMPRSLILEPTRELAAQVAEAFETLGSQHKLTVALLIGGVSFDDQEKKLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGAD+LI TPGR+LDHF RGKLLMN ++ LVIDEADRMLDMGFIP I+ I  L+P +RQT
Sbjct: 121 RGADILIATPGRLLDHFGRGKLLMNAVDYLVIDEADRMLDMGFIPDIERICKLLPPSRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+QK+++ FL+NP+++ V+ P++ A+ I      + A    K  +L++L++
Sbjct: 181 LFFSATMPPEIQKLTDQFLKNPEQVRVSAPATAAKNITQKLKFSPADSKTKRHVLRELMR 240

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           S+  T++N IIFCN+K++V  L  SL K GF+  A+HG++DQR R   L  F++G I  +
Sbjct: 241 SEVSTIQNAIIFCNRKRDVAVLHKSLVKHGFNAGALHGDLDQRQRTATLEAFRKGEITYL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            ASD+AARGLDIP+V HVFNFDVP   E+Y+HRIGRTGRAGR G A  +V  +++K + A
Sbjct: 301 AASDVAARGLDIPEVSHVFNFDVPISPEDYVHRIGRTGRAGRDGYAAMIVTPKEMKGVRA 360

Query: 360 IEKLIEKKVDWLNGDLSSLN 379
           IE L + K++W++G+ S+ N
Sbjct: 361 IENLCKAKIEWIDGEPSTEN 380


>gi|154253690|ref|YP_001414514.1| DEAD/DEAH box helicase domain-containing protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154157640|gb|ABS64857.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 504

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/383 (58%), Positives = 286/383 (74%), Gaps = 5/383 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+P+V+ AV + GY +PTPIQ + IP VL   DV GIAQTGTGKTASF LPM+
Sbjct: 1   MTFDELGLAPEVLKAVSETGYTEPTPIQAQAIPHVLAGRDVLGIAQTGTGKTASFTLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +GRAR RMPR+LILEPTRELAAQVA+NFE YGK   L++ALLIGG+ F  Q KKL+
Sbjct: 61  DKLSRGRARARMPRSLILEPTRELAAQVAENFETYGKYNKLSMALLIGGVSFGDQEKKLD 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH NRGK+L+  ++ILVIDEADRMLDMGFIP I+ I   +PFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHCNRGKVLLTGVQILVIDEADRMLDMGFIPDIEEICKKLPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+Q++++ FL NP+RIEV   SST+  I+   + T      K  +LQ++++
Sbjct: 181 LFFSATMPPEIQRLTDTFLHNPERIEVARASSTSANIKQVLLKT--TRDGKRDVLQRMIE 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D +KN IIFCN+K++V  L  +L K G S  AIHG++DQ +R + L  F+ GTI+L+V
Sbjct: 239 -EDNVKNAIIFCNRKRDVSVLERALSKSGLSAGAIHGDLDQSTRTRTLDGFRNGTIRLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFN+DVP+ AE+Y+HRIGRTGRAG+ G A TL  +ED K++ AI
Sbjct: 298 ASDVAARGLDIPDVSHVFNYDVPSHAEDYVHRIGRTGRAGKSGTAVTLSTREDGKYLAAI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           EKLI   +   +GD+     P E
Sbjct: 358 EKLIGNPIP--SGDVDVPAAPAE 378


>gi|27379459|ref|NP_770988.1| ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA 110]
 gi|27352611|dbj|BAC49613.1| ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA 110]
          Length = 500

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/374 (59%), Positives = 281/374 (75%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS KV+ AV   GY  PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MSFSNLGLSEKVLAAVAATGYTTPTPIQEQAIPHVLARKDVLGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           TILEKGRAR RMPRTLILEPTRELAAQV +NF++YG    L VALLIGG+ F  Q+ KL 
Sbjct: 61  TILEKGRARARMPRTLILEPTRELAAQVKENFDRYGAGQKLNVALLIGGVSFGDQDAKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG LL+  +E+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM  E+++++E FL NP+++EV+ P++TA T+    V    +  +K  LL++LL+
Sbjct: 181 LFFTATMPPEIRRITETFLHNPQKVEVSKPATTAVTVTQSQVPAGKKAHEKRELLRRLLR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +KN IIFCN+K+ V  +  SL+K GFSV A+HG++DQ +RM  L  F++G + L+V
Sbjct: 241 EAKDLKNAIIFCNRKREVAIVHKSLQKHGFSVGALHGDMDQPARMAALEQFRKGELPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HVFNFDVP+  ++Y+HR+GRTGRAGR G A ++V   D K + AI
Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRVGRTGRAGRSGTAISIVTPLDQKSMVAI 360

Query: 361 EKLIEKKVDWLNGD 374
           EKLI + +    GD
Sbjct: 361 EKLIGQSIPRAEGD 374


>gi|304391684|ref|ZP_07373626.1| probable ATP-dependent RNA helicase Exp9 [Ahrensia sp. R2A130]
 gi|303295913|gb|EFL90271.1| probable ATP-dependent RNA helicase Exp9 [Ahrensia sp. R2A130]
          Length = 532

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/372 (59%), Positives = 280/372 (75%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGLSPKV+ AV  +GY +PTPIQ + IP VL R DV GIAQTGTGKTA+F LPM+
Sbjct: 1   MKFSDLGLSPKVLAAVEASGYTEPTPIQAQAIPEVLNRRDVMGIAQTGTGKTAAFTLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++ EKGRAR RMPRTLILEPTRELAAQV  NFEKY  N+ L VALLIGG   E Q K L+
Sbjct: 61  SLSEKGRARARMPRTLILEPTRELAAQVEQNFEKYAVNHKLNVALLIGGTSMEKQMKILD 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGADVLI TPGR+LD F RG++LMN +EILVIDEADRMLDMGFIP I+ I  +VPFTRQT
Sbjct: 121 RGADVLIATPGRLLDLFERGRILMNGVEILVIDEADRMLDMGFIPDIERIVKMVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   ++K+++ FLQNP ++ V   ++TA+T+E   V    +  +K A L+ ++ 
Sbjct: 181 LFFSATMPPIIEKLADQFLQNPVQVMVAAAATTAKTVEQKLVKAPKKDFEKRAKLRDVID 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQD +KN IIFCN+K +V  L  S+ K+G+SV ++HG++DQ +RMK L+ F++  I  +V
Sbjct: 241 SQDNIKNAIIFCNRKVDVATLHRSMTKRGYSVGSLHGDMDQSARMKTLAAFRDNEITHLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFN+DVP   ++Y+HRIGR GRAGR G AFT V   D ++I A+
Sbjct: 301 ASDVAARGLDIPDVSHVFNYDVPIHPDDYVHRIGRCGRAGRDGWAFTFVTPADDRYIKAV 360

Query: 361 EKLIEKKVDWLN 372
             L   ++++L 
Sbjct: 361 MALTGDEIEYLG 372


>gi|300023857|ref|YP_003756468.1| DEAD/DEAH box helicase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525678|gb|ADJ24147.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 540

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/385 (58%), Positives = 284/385 (73%), Gaps = 12/385 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLSPKV  AV+ AGYV PTPIQ   IP+ L   DV GIAQTGTGKTASFVLPM+T 
Sbjct: 6   FADLGLSPKVQAAVMAAGYVNPTPIQAAAIPVALTGRDVLGIAQTGTGKTASFVLPMITR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE GRAR RMPR+LIL PTRELAAQVA +FEKYG N+ L+VALLIGG+  + Q KKL+RG
Sbjct: 66  LETGRARARMPRSLILAPTRELAAQVAQSFEKYGTNHKLSVALLIGGVSMDDQVKKLDRG 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RG++++  +EILVIDEADRMLDMGFIP I+ I  L+P  RQTL 
Sbjct: 126 VDVLIATPGRLLDHFGRGRVMLMGVEILVIDEADRMLDMGFIPDIEKICKLLPPRRQTLF 185

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA---LLQQLL 239
           FSATM  E+ ++ + FL++P RIEV  P++TA+TI   FV  Y Q  +  A   +L++L+
Sbjct: 186 FSATMPPEITRLVDQFLKDPTRIEVAKPATTAKTITQRFV--YCQNGEDWAKREMLRELI 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +KN IIFCN+K++V  L  SL K GF+   +HG++DQ SR + L  F+ G I L+
Sbjct: 244 RDGN-VKNAIIFCNRKRDVAVLYKSLSKHGFNAGELHGDMDQTSRTETLDKFRNGEIMLL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            ASD+AARGLDIPDV HVFNFD+P  A++Y+HRIGRTGRAGR G + +LV+ +D+K +  
Sbjct: 303 AASDVAARGLDIPDVSHVFNFDLPWAADDYVHRIGRTGRAGREGHSASLVSPDDLKFVAD 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IEK+  +   WL       +PP E+
Sbjct: 363 IEKVTGETAIWLG------DPPSEE 381


>gi|75675849|ref|YP_318270.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
 gi|74420719|gb|ABA04918.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
          Length = 483

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/368 (60%), Positives = 277/368 (75%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS KV+ AV  AGY  PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MSFSHLGLSDKVLAAVAAAGYTSPTPIQDQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV + F+KYG    L VALLIGG+ F  Q+ KL 
Sbjct: 61  TLLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG LL+  +E+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM +E+++V++ FL NP++IEV+ P++TA T+    V+   +  +K  LL++LL+
Sbjct: 181 LFFTATMPNEIRRVTDTFLHNPEKIEVSRPATTAATVAQSQVSCSREPHEKRELLRRLLR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +KN IIFCN+K++V  +C SL+K GFS  A+HG++DQ +R   L  F++G + L+V
Sbjct: 241 EAKELKNAIIFCNRKRDVAIVCKSLQKHGFSAGALHGDMDQSARTASLDQFRKGELPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HV NFDVP   ++Y+HRIGRTGRAGR G A T+V   D K + AI
Sbjct: 301 ASDVAARGLDIPEVSHVLNFDVPYHPDDYVHRIGRTGRAGRTGTAITIVCPADFKSLAAI 360

Query: 361 EKLIEKKV 368
           EKL  + +
Sbjct: 361 EKLTGQAI 368


>gi|254466325|ref|ZP_05079736.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I]
 gi|206687233|gb|EDZ47715.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I]
          Length = 467

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/462 (49%), Positives = 310/462 (67%), Gaps = 19/462 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T+
Sbjct: 4   FTDLNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+  +++G
Sbjct: 64  LARGRARARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDALIDKG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           FSATM  E+++++  FL  P RIEV   ++ +ETIE   V         + S+K  +L+ 
Sbjct: 184 FSATMAPEIERITNTFLSGPARIEVARQATASETIEQAVVQVKPSRRDREGSEKRTVLRA 243

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+  + D + NGIIFCN+K +V     SL+K G+   AIHG++DQ  R + L +F+EG++
Sbjct: 244 LIDGEGDKLTNGIIFCNRKTDVDICAKSLKKYGYDAAAIHGDLDQSQRTRTLDSFREGSL 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VASD+AARGLD+P V HVFNFDVP  AE+Y+HRIGRTGRAGR GKA T+    D K 
Sbjct: 304 RILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAITICTPRDEKA 363

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR-----RKK 411
           +DA+EKLI+K +  L   +    P  EK   +    A K +   Q +   D      RK+
Sbjct: 364 LDAVEKLIQKDIKRLENPVKP-EPVQEKPSRSAKPDAAKPDTAKQDTAKADTGSRAPRKE 422

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFM 453
           + ++QK        E+ S   +  + +D   +G   ++P+F+
Sbjct: 423 DKAAQK-------PERSSPRGKYGKRDDKAVVGMGDHLPSFI 457


>gi|126740399|ref|ZP_01756087.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6]
 gi|126718535|gb|EBA15249.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6]
          Length = 506

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/464 (48%), Positives = 311/464 (67%), Gaps = 18/464 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T+
Sbjct: 38  FTDLNLNPKVLKAIYEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 97

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q++ +++G
Sbjct: 98  LARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDQLIDKG 157

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL 
Sbjct: 158 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 217

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           FSATM  E+++++  FL  P+R+EV   ++T+E IE   V   A     + S+K  +L+ 
Sbjct: 218 FSATMAPEIERITNTFLSAPERVEVARQATTSENIEQSVVMFKASRKDREGSEKRRVLRT 277

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L++ + D + NGIIFCN+K +V  +  SL+K GF    IHG++DQ  R K L  F++G++
Sbjct: 278 LIEQEGDKLTNGIIFCNRKTDVDIVAKSLKKYGFDAAPIHGDLDQSQRTKTLDGFRDGSL 337

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VASD+AARGLD+P V HVFNFDVP  AE+Y+HRIGRTGRAGR GKA T+ A  D K 
Sbjct: 338 RILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAITICAPRDEKA 397

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-------KNNPIPQKSTGFDRR 409
           + A+E L++K++  L   +    P   K +  Q + A        K  P+ +  T     
Sbjct: 398 LAAVEDLVKKEIARLENPVKKPEPKKRKSNKDQKDAAEIAADAVTKPEPVEKSDT----- 452

Query: 410 KKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFM 453
           KK+ S      P  +  +    +Q  + +D   +G   +MP+F+
Sbjct: 453 KKHVSKHSDEAPQPKGNRGRGGKQGGRRDDRVVVGMGDHMPSFI 496


>gi|84686458|ref|ZP_01014352.1| ATP-dependent RNA helicase RhlE [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84665641|gb|EAQ12117.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
           HTCC2654]
          Length = 474

 Score =  445 bits (1144), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/460 (50%), Positives = 311/460 (67%), Gaps = 15/460 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL LSPKV+ AV +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T+
Sbjct: 4   FSDLNLSPKVLKAVEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITM 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q++ ++RG
Sbjct: 64  LARGRARARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDQLIDRG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKLL+  ++++V+DEADRMLDMGFIP I+ I  LVPFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQVMVVDEADRMLDMGFIPDIERIFGLVPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHC-FVATYAQ--YSKKCALLQQ 237
           FSATM  E+++++  FL NP R+EV   ++T E I  E C F A+      ++K  LL+ 
Sbjct: 184 FSATMASEIERITNTFLSNPARVEVARQATTGENIAQEVCKFKASRRDRAATEKRRLLRA 243

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+  + +   N IIFCN+K +V  +  SL+K G+    IHG++DQ  RM+ L  F++GT+
Sbjct: 244 LIDREGEACTNAIIFCNRKMDVDVVAKSLKKYGYDAAPIHGDLDQSKRMETLQGFRDGTL 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VASD+AARGLD+P V HVFNFDVP  AE+Y+HRIGRTGRAGR GKA  +    D K+
Sbjct: 304 RFLVASDVAARGLDVPAVSHVFNFDVPGHAEDYVHRIGRTGRAGRKGKAVMICEPRDEKN 363

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKSTGFDRRKKNYSS 415
           +DA+E+LIEK++  +   L   + P+E+    +   AR K +  P +    D+  ++   
Sbjct: 364 LDAVERLIEKEIPRIESPLG--DAPVEETPKPEKKSARSKPSDKPARE---DKPARDDKP 418

Query: 416 QKSHIPLKESEKISKLQQDIQENDADS--LGFRGNMPAFM 453
            +   P K SE  SK + D +     S   G R + P  M
Sbjct: 419 ARDEAPAK-SEDASKSRSDTRSRGKPSGRGGRRDDAPTGM 457


>gi|260433500|ref|ZP_05787471.1| putative ATP-dependent RNA helicase RhlE [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417328|gb|EEX10587.1| putative ATP-dependent RNA helicase RhlE [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 476

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/429 (51%), Positives = 294/429 (68%), Gaps = 15/429 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASFVLPM+T+
Sbjct: 4   FTDLNLNPKVLKAIEEAGYETPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFVLPMITL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+  ++RG
Sbjct: 64  LARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           FSATM  E++++++ FL  P RIEV   ++ +ETIE   V         + S K  +L+ 
Sbjct: 184 FSATMAPEIERITDTFLSAPARIEVARQATASETIEQGVVMIKGGRRDREGSTKRKVLRA 243

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+ ++ D   N IIFCN+K +V     SL+K G+   AIHG++DQ  R + L  F+EG++
Sbjct: 244 LIDAEGDKCTNAIIFCNRKTDVDITAKSLKKYGYDAAAIHGDLDQSVRTRTLEGFREGSL 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VASD+AARGLD+P V HVFNFDVP+  E+Y+HRIGRTGRAGR GKA TL    D K 
Sbjct: 304 RFLVASDVAARGLDVPSVSHVFNFDVPSHPEDYVHRIGRTGRAGREGKAITLCTARDEKA 363

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           ++AIEKLI+K++  L+  + +   P E  D      +R        ST  D R+      
Sbjct: 364 LEAIEKLIQKEIPRLDNPVEA--EPAEAEDKKPEKKSR-------ASTRKDERESEAKDT 414

Query: 417 KSHIPLKES 425
           +   P+K++
Sbjct: 415 RKDQPIKDA 423


>gi|86137575|ref|ZP_01056152.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193]
 gi|85825910|gb|EAQ46108.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193]
          Length = 527

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/418 (52%), Positives = 293/418 (70%), Gaps = 18/418 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L+ KV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T+
Sbjct: 4   FTDLNLNAKVLKAIAEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q++ +++G
Sbjct: 64  LARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDQLIDKG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           FSATM  E+++++  FL  P+RIEV   +S +ETIE   V   A     + S+K   L+ 
Sbjct: 184 FSATMAPEIERITNTFLSAPERIEVARQASASETIEQHVVLFKASRKDREASEKRTALRA 243

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+ ++ + + NGIIFCN+K +V  +  SL+K GF    IHG++DQ  R K L  F+EG +
Sbjct: 244 LINAEGEKLTNGIIFCNRKSDVDIVAKSLKKYGFDAAPIHGDLDQSQRTKTLDGFREGKL 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VASD+AARGLD+P V HVFNFDVP   E+Y+HRIGRTGRAGR GKA T+ +  D K 
Sbjct: 304 RILVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGREGKAITICSGRDEKA 363

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN-----PIPQKSTGFDRR 409
           + A+E L++K+++ L         P++K + A+ + A+K +     P     TG  R+
Sbjct: 364 LAAVESLLQKEINRLEN-------PVKKAEPAKRSSAKKPSDQDAKPTTGSETGSGRK 414


>gi|114771836|ref|ZP_01449229.1| ATP-dependent RNA helicase RhlE [alpha proteobacterium HTCC2255]
 gi|114547652|gb|EAU50543.1| ATP-dependent RNA helicase RhlE [alpha proteobacterium HTCC2255]
          Length = 461

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/401 (56%), Positives = 289/401 (72%), Gaps = 14/401 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLSPKV+ A+ D GY  PTPIQ + IP  L+  DV GIAQTGTGKTA F LPM+  
Sbjct: 4   FIDLGLSPKVMKAINDVGYDTPTPIQSEAIPHALEGRDVLGIAQTGTGKTAGFTLPMIHK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NFE+Y K   L +ALLIGG+ F+ Q++ ++RG
Sbjct: 64  LARGRARARMPRSLVLAPTRELAAQVAENFEQYAKYVKLDMALLIGGVSFKDQDRLIDRG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKLL+  IEI+V+DEADRMLDMGFIP I+ I  L PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFKLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH---CFVAT--YAQYSKKCALLQQ 237
           FSATM  E+ ++++ FLQNPK +EV   ++T+E I     CF A     +  KK  LL+ 
Sbjct: 184 FSATMAPEINRITQEFLQNPKLVEVARQATTSENITQNVICFKAENRKLEAKKKRDLLRT 243

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +++ + + + NGI+FCN+K +V  +  SL+K G SV AIHG++DQR RM++L+ FK   I
Sbjct: 244 IIKDEGEKLTNGIVFCNRKVDVDIVMKSLKKHGHSVGAIHGDLDQRYRMEVLAGFKNNDI 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+VASD+AARGLDIP V HVFNFDVP  AE+Y+HRIGRTGRAGR G AF L    +IKH
Sbjct: 304 TLLVASDVAARGLDIPAVSHVFNFDVPIHAEDYVHRIGRTGRAGRKGWAFMLCLPHEIKH 363

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           +D IE+L+++ +  L  +L    P L+K    Q N +R  N
Sbjct: 364 LDKIEELVKQPIPRLEVEL----PKLKK----QENKSRVKN 396


>gi|149914601|ref|ZP_01903131.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. AzwK-3b]
 gi|149811394|gb|EDM71229.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. AzwK-3b]
          Length = 511

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/398 (53%), Positives = 285/398 (71%), Gaps = 8/398 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L+PKV+ AV +AGY  PTPIQ   IP  L+  D+ GIAQTGTGKTASF LPML++
Sbjct: 4   FSDLNLNPKVLKAVEEAGYTDPTPIQAGAIPPALEGRDILGIAQTGTGKTASFTLPMLSL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y KN  LT ALLIGG+ F+ Q+K +++G
Sbjct: 64  LARGRARARMPRSLVLCPTRELAAQVAENFDTYSKNLKLTKALLIGGVSFKEQDKLIDKG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLICTPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQT  
Sbjct: 124 VDVLICTPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTFF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY-----SKKCALLQQ 237
           FSATM  E+++++  FLQNP RIEV   ++ +ETIE   V           S+K  +L+ 
Sbjct: 184 FSATMAPEIERITNTFLQNPVRIEVARQATASETIEQGVVMFKPSRRERADSEKRDILRA 243

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++ ++ +   N I+FCN+K +V  +  SL+K G+    IHG++DQ  R + L  F+ G +
Sbjct: 244 IIDAEGEACTNAIVFCNRKVDVDIVSKSLKKHGYDAAPIHGDLDQSQRTRTLDGFRAGDL 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VASD+AARGLD+P V HVFN+DVP  AE+Y+HRIGRTGRAGR GKA  +    D K+
Sbjct: 304 KILVASDVAARGLDVPSVSHVFNYDVPGHAEDYVHRIGRTGRAGRSGKAMMISGPRDDKN 363

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           +DAIE+LI+K++  L   ++  +P  E  D A    AR
Sbjct: 364 LDAIERLIQKQIPRLENPVAGTSPSDE--DSAASPDAR 399


>gi|83952321|ref|ZP_00961053.1| ATP-dependent RNA helicase RhlE [Roseovarius nubinhibens ISM]
 gi|83837327|gb|EAP76624.1| ATP-dependent RNA helicase RhlE [Roseovarius nubinhibens ISM]
          Length = 552

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/422 (50%), Positives = 302/422 (71%), Gaps = 10/422 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L+ KV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPML++
Sbjct: 4   FSELNLNAKVLKAIDEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMLSL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q + +++G
Sbjct: 64  LARGRARARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQEQIIDKG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKL++++++++V+DEADRMLDMGFIP I+ I  L PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           FSATM  E+++++  FL NP R+EV   ++ +ETIE   V         + S+K  +L++
Sbjct: 184 FSATMAPEIERITNTFLSNPARVEVARQATASETIEQGVVMFKGSRRDREASEKRNVLRK 243

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+ ++ D   N IIFCN+K +V  +  SL+K G+    IHG++DQ  R + L +F+ G +
Sbjct: 244 LIDAEGDKCTNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTRTLESFRAGDL 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VASD+AARGLD+P V HVFNFDVP+ AE+Y+HRIGRTGRAGR GKA  + +  D K+
Sbjct: 304 RFLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGKAMMICSARDEKN 363

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            DAIEKLI+K++  ++  L +   P ++ D A+ + A  + P P+++    RR K+ S++
Sbjct: 364 FDAIEKLIQKEIPRIDNPLGTA--PSDEGDNAKPDSAEGDKPKPRRTRS--RRGKSDSAR 419

Query: 417 KS 418
            +
Sbjct: 420 DT 421


>gi|92117844|ref|YP_577573.1| DEAD/DEAH box helicase-like [Nitrobacter hamburgensis X14]
 gi|91800738|gb|ABE63113.1| DEAD/DEAH box helicase-like protein [Nitrobacter hamburgensis X14]
          Length = 487

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/368 (59%), Positives = 277/368 (75%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS KV+ AV  AGY  PTPIQ + IP VL   DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MSFSHLGLSDKVLAAVAAAGYTAPTPIQDQAIPHVLAHRDVLGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV ++F+KYG    L VALLIGG+ F  Q+ KL 
Sbjct: 61  TLLEKGRARARMPRTLILEPTRELAAQVKESFDKYGVGQKLNVALLIGGVSFGDQDMKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG LL+  +E+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM +E+++V++ FL NP++IEV+ P++ A T+    V+   +  +K  LL++LL+
Sbjct: 181 LFFTATMPNEIRRVTDAFLHNPEKIEVSRPATAAATVAQSQVSCGREAHEKRELLRRLLR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +KN IIFCN+K++V  +  SL+K GFSV A+HG++DQ +R   L  F++G + L+V
Sbjct: 241 DAKDLKNAIIFCNRKRDVAIVYKSLQKHGFSVGALHGDMDQSARTASLDQFRKGELPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HV NFDVP+  ++Y+HRIGRTGRAGR G A T+V   D K + AI
Sbjct: 301 ASDVAARGLDIPEVSHVLNFDVPHHPDDYVHRIGRTGRAGRTGTAITIVCSADFKSVAAI 360

Query: 361 EKLIEKKV 368
           EKL  + +
Sbjct: 361 EKLTGQAI 368


>gi|209964678|ref|YP_002297593.1| DeaD [Rhodospirillum centenum SW]
 gi|209958144|gb|ACI98780.1| DeaD [Rhodospirillum centenum SW]
          Length = 528

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/451 (50%), Positives = 304/451 (67%), Gaps = 19/451 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL P+V+ A+ + GY  PTPIQ K IP VLQ  DV G AQTGTGKTASF LPM+
Sbjct: 1   MQFSELGLGPEVLQAISEVGYTTPTPIQEKAIPWVLQGRDVLGCAQTGTGKTASFTLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL +GRAR RMPR+LILEPTRELAAQVADNFE YGK + L +ALLIGG  F  Q KKLE
Sbjct: 61  EILAQGRARARMPRSLILEPTRELAAQVADNFEIYGKYHKLNMALLIGGESFGDQVKKLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR++D F RG +L+++I+ILVIDEADRMLDMGFIP I+ I  L+P  RQT
Sbjct: 121 RGVDVLIATPGRMIDLFERGNILLSDIKILVIDEADRMLDMGFIPDIERIVGLLPKLRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++++++ FL NP+ I V  P+S A T+       Y +  +K  +L+ LLQ
Sbjct: 181 LFFSATMPPEIRRLADQFLMNPREITVAPPASPAATVTQALAVAYDEDKRK--VLRHLLQ 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++D +KN  IFCN+KK+V  L  SL + GF+  A+HG++ Q  R + L  FK+G+I L+V
Sbjct: 239 TED-VKNAFIFCNRKKDVGILHQSLSRHGFNAGALHGDMVQSKRTETLEAFKQGSIDLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SD+AARG+DI  V HVFNFDVP  AE+Y+HRIGRTGRAG  G+AFT+ A ED + + AI
Sbjct: 298 CSDVAARGIDIKGVSHVFNFDVPFNAEDYVHRIGRTGRAGLTGRAFTIAAPEDGRLVQAI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE------------KIDIAQHNHARKNNP---IPQKSTG 405
           EKLI +++  +  D     P LE            + D  +    RK+ P    P +S  
Sbjct: 358 EKLIGREIPRVLID-GLETPELEFEESGRGRRRPRRKDEGRKEEGRKSEPRSARPPRSRA 416

Query: 406 FDRRKKNYSSQKSHIPLKESEKISKLQQDIQ 436
            DR +   S+  + +P + + +  + ++ ++
Sbjct: 417 ADRTEAGDSAAATPVPEERAARPERSERSVR 447


>gi|89070152|ref|ZP_01157481.1| ATP-dependent RNA helicase RhlE [Oceanicola granulosus HTCC2516]
 gi|89044269|gb|EAR50415.1| ATP-dependent RNA helicase RhlE [Oceanicola granulosus HTCC2516]
          Length = 477

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/376 (54%), Positives = 287/376 (76%), Gaps = 6/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T+
Sbjct: 4   FSDLNLNPKVLKAIEEAGYETPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q++ +++G
Sbjct: 64  LHRGRARARMPRSLVLCPTRELAAQVAENFDIYAKHTKLTKALLIGGVSFKEQDQLIDKG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I  L PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYA----QYSKKCALLQQ 237
           FSATM  E+++++  FL NP+R+EV   +S +ETI +H  V   +    + S+K A+L+ 
Sbjct: 184 FSATMAPEIERITNTFLSNPERVEVARQASASETIAQHVVVFRPSRKDREGSEKRAVLRA 243

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +++S+ +  +NGIIFCN+K +V  +  S++K G+    IHG++DQ +RM+ L  F++GT+
Sbjct: 244 MIESEGENCRNGIIFCNRKVDVDVVAKSMKKNGYDAAPIHGDLDQSTRMRTLDGFRDGTL 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VASD+AARGLDIP+V HVFN+DVP+ AE+Y+HRIGRTGRAGR G+A  +    D K+
Sbjct: 304 RFLVASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGREGRAMMISVPRDDKN 363

Query: 357 IDAIEKLIEKKVDWLN 372
           ++AIE+LI+ ++  ++
Sbjct: 364 LEAIERLIQTEIPRMD 379


>gi|114764595|ref|ZP_01443799.1| ATP-dependent RNA helicase RhlE [Pelagibaca bermudensis HTCC2601]
 gi|114542971|gb|EAU45991.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. HTCC2601]
          Length = 502

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/372 (55%), Positives = 278/372 (74%), Gaps = 6/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T 
Sbjct: 4   FSDLNLNPKVLKAIEEAGYETPTPIQAGAIPHALEGKDVLGIAQTGTGKTASFTLPMITS 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K   LT ALLIGG+ F+ Q + +++G
Sbjct: 64  LARGRARARMPRSLVLCPTRELAAQVAENFDTYAKYVKLTKALLIGGVSFKEQEQLIDKG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKL++ +++++V+DEADRMLDMGFIP I+ I SL PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           FSATM  E+++++  FL NP+RIEV   ++ +ETIE   V         + S+K  +L+Q
Sbjct: 184 FSATMAPEIERITNTFLSNPERIEVARQATASETIEQGAVFFKGSRKDREGSEKRTVLRQ 243

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+  + +   N I+FCN+K +V  +  SL+K G++   IHG++DQ  R + L  F+EG+I
Sbjct: 244 LIDREGEKCTNAIVFCNRKVDVDIVAKSLKKYGYNAEPIHGDLDQSQRTRTLEGFREGSI 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++ASD+AARGLD+P V HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V   D K+
Sbjct: 304 RLLIASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAFTIVVPRDEKN 363

Query: 357 IDAIEKLIEKKV 368
            + +EKL++K++
Sbjct: 364 FEDVEKLLQKEI 375


>gi|56696327|ref|YP_166684.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
 gi|56678064|gb|AAV94730.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
          Length = 471

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/462 (49%), Positives = 307/462 (66%), Gaps = 15/462 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T+
Sbjct: 4   FSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+  ++RG
Sbjct: 64  LARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           FSATM  E+++++  FL  P RIEV   ++ +ETIE   V         + S+K A+L+ 
Sbjct: 184 FSATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREASEKRAVLRA 243

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+ ++ +   N IIFCN+K +V  +  SL+K G+    IHG++DQ  R + L  F+EG +
Sbjct: 244 LIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFREGKL 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VASD+AARGLD+P V HVFNFDVP   E+Y+HRIGRTGRAGR GKA TL    D K 
Sbjct: 304 RLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCIPRDEKA 363

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +DAIEKLI+K +  L     +   P E     +   AR + P     +  D+R+      
Sbjct: 364 LDAIEKLIQKDIPRLENPARTEEKP-EAKPRREEKPARADKPA---RSDADKREPVKREA 419

Query: 417 KSHIPLK-ESEKISKLQQDIQENDADS----LGFRGNMPAFM 453
               P+K E++K  +   + ++   D     +G   ++P+F+
Sbjct: 420 DKRDPVKREADKRDRKGGERRDRKDDRGARVVGMGDHLPSFI 461


>gi|294083671|ref|YP_003550428.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663243|gb|ADE38344.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 464

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/466 (48%), Positives = 314/466 (67%), Gaps = 17/466 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGLS ++  AV + GY  PTPIQ K+IP++L   D+ G AQTGTGKTASF LPM+
Sbjct: 1   MKFSDLGLSDELSQAVAELGYESPTPIQEKSIPIILMGRDILGSAQTGTGKTASFTLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  GRA+ RMPR+LIL PTRELAAQVA++FEK+  ++ L +ALLIGG+ F  QN  L+
Sbjct: 61  DILASGRAKARMPRSLILAPTRELAAQVAESFEKFSTHHKLNMALLIGGVSFSDQNTALD 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR+LDHF RGK+++N++++LVIDEADRMLDMGFIP ++ I SL+P  RQT
Sbjct: 121 KGVDVLIATPGRLLDHFERGKVMLNDVKVLVIDEADRMLDMGFIPDVERIVSLLPPLRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT++D++ K+S  F+ NPK IEV  P+STA+T+       +     K A+L+ LL+
Sbjct: 181 LFFSATLSDDIHKISHKFVSNPKIIEVAPPASTADTVAQHL--QWTDVKSKRAVLRDLLR 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            + T+KN +IFCN+K+++  L  SL K  FS  A+HG++ Q +R++ L  FK+G + L++
Sbjct: 239 VE-TVKNAVIFCNRKRDISTLVKSLTKHEFSAVAMHGDMTQSARLEALDKFKKGEVPLLI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDA 359
           ASD+AARGLDI  + HVFNFDVP  AE+Y+HRIGRTGRAG+ G+AFT+ A K+D ++I A
Sbjct: 298 ASDVAARGLDIAGLSHVFNFDVPMNAEDYVHRIGRTGRAGKSGRAFTIAAGKDDKRYISA 357

Query: 360 IEKLIEKKVDWLN--GDLSSLNPPLEKIDIAQHNHARKNNPIPQK----STGFDRRKKNY 413
           IE LI K +  +   GD +S        D  +    R   P  ++    ST  D++  + 
Sbjct: 358 IESLIGKTIPLVGDAGDDASETKTSTAKDTDKKPAGRGKKPAAKEADKVSTKADKKPASS 417

Query: 414 SSQKSHIPLKESEKISKLQQDIQE------NDADSLGFRGNMPAFM 453
           +  K H   KE  + ++      E         D+L   G++PAF+
Sbjct: 418 TKPKDH-NTKEPRQKNRNGNTKDELPSPPDCQGDTLEATGHIPAFL 462


>gi|254510324|ref|ZP_05122391.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221534035|gb|EEE37023.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 455

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/387 (54%), Positives = 279/387 (72%), Gaps = 6/387 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T+
Sbjct: 9   FNELNLNPKVLKAIEEAGYESPTPIQEGAIPAALEGRDVLGIAQTGTGKTASFTLPMITL 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+  ++RG
Sbjct: 69  LARGRARARMPRSLVLCPTRELAAQVAENFDTYAKHLKLTKALLIGGVSFKEQDALIDRG 128

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL 
Sbjct: 129 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 188

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           FSATM  E++++++ FL  P R+EV   ++ +ETIE   V         + S+K   L+ 
Sbjct: 189 FSATMAPEIERITDTFLSAPTRVEVARQATASETIEQGVVMFKGGRRDREASQKRKTLRA 248

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+ ++ D   N IIFCN+K +V     SL+K G+   AIHG++DQ  RMK L  F++GT+
Sbjct: 249 LIDAEGDKCTNAIIFCNRKTDVDICAKSLKKYGYDAAAIHGDLDQSQRMKTLDGFRDGTL 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VASD+AARGLD+P V HVFNFDVP   E+Y+HRIGRTGRAGR GKA T+ +  D K 
Sbjct: 309 RLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGREGKAITICSGRDEKA 368

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLE 383
           + AIE LI+K++  ++  + +  P  E
Sbjct: 369 LTAIESLIQKEIPRIDNPVKADEPKPE 395


>gi|83858471|ref|ZP_00951993.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
 gi|83853294|gb|EAP91146.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
          Length = 480

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/369 (57%), Positives = 273/369 (73%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGLSP ++ A+ DAGY KPTPIQ   IP+ L   DV GIAQTGTGKTASF LPM+
Sbjct: 1   MTFEDLGLSPALLSAIADAGYEKPTPIQEGAIPVALTGRDVLGIAQTGTGKTASFTLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +GRAR RMPR+L+L PTRELAAQVADN + Y KN+ L +ALLIGG+ FE Q K L+
Sbjct: 61  ERLSRGRARARMPRSLVLAPTRELAAQVADNVKLYAKNHKLNMALLIGGVSFEPQKKILD 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GAD+LI TPGR+LDHF RG LL+  +EILVIDEADRMLDMGFIP I+ I  L+P  RQT
Sbjct: 121 QGADILIATPGRLLDHFERGGLLLTGVEILVIDEADRMLDMGFIPDIERILKLLPPRRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
           L FSATM  E++ + + FL++P+R+EV  P+ TA+TI      V+     +K+ AL   +
Sbjct: 181 LFFSATMPGEIKHLVDTFLRDPERVEVTRPAQTADTITQFILRVSDNQARTKREALRAAI 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             ++D +KNGIIFCN+K++V  +  SL++ GFS   IHG++DQ  R K L+ FK G ++L
Sbjct: 241 --NRDGVKNGIIFCNRKRDVDIVARSLQRHGFSAAPIHGDLDQSQRTKTLAEFKSGELRL 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASD+AARGLDIP V HVFN D+P  A++Y+HRIGRTGRAG+ G+A TLV+ ED K + 
Sbjct: 299 LVASDVAARGLDIPAVSHVFNVDIPRNADDYVHRIGRTGRAGQKGEAVTLVSSEDNKALA 358

Query: 359 AIEKLIEKK 367
            + KLI K+
Sbjct: 359 KVVKLIGKE 367


>gi|84502634|ref|ZP_01000753.1| ATP-dependent RNA helicase RhlE [Oceanicola batsensis HTCC2597]
 gi|84389029|gb|EAQ01827.1| ATP-dependent RNA helicase RhlE [Oceanicola batsensis HTCC2597]
          Length = 471

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/475 (47%), Positives = 303/475 (63%), Gaps = 41/475 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L PKV+ A+ DAGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T+
Sbjct: 4   FTDLNLDPKVLQAIADAGYESPTPIQQGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+  ++RG
Sbjct: 64  LSKGRARARMPRSLVLAPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           FSATM  E+++++  FL  P R+EV   ++ +ETIE   V         + S+K  +L+ 
Sbjct: 184 FSATMAPEIERITNTFLSGPARVEVARQATASETIEQGVVMFKGSRRDREGSEKRQVLRD 243

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+  + +  +N IIFCN+K +V     SL+K GF    IHG+++Q  R K L  F++G++
Sbjct: 244 LIDREGEDCRNAIIFCNRKTDVDVTAKSLKKYGFDAAPIHGDLEQSQRTKTLEGFRDGSL 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VASD+AARGLDIP+V HVFNFDVP+ AE+Y+HRIGRTGRAGR GKA  +    D K+
Sbjct: 304 RFLVASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRIGRTGRAGRSGKAIMICVPRDEKN 363

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  IE LIEK +               +ID+     A+     P+K+   D+ K+  S  
Sbjct: 364 LADIESLIEKTI--------------PRIDLPNAPAAKPEGDAPEKA---DKPKRTRSRG 406

Query: 417 KSHIPLKESEKISKLQQDI------------------QENDADSLGFRGNMPAFM 453
           K      E+E      +D                   +E+++  +G   +MP+F+
Sbjct: 407 KPKTDTAEAEAAETPTRDDVPTEVPAPQQKARGGRRGREDESKVVGMGDHMPSFI 461


>gi|332557965|ref|ZP_08412287.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides WS8N]
 gi|332275677|gb|EGJ20992.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides WS8N]
          Length = 516

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/372 (55%), Positives = 275/372 (73%), Gaps = 6/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L P+V+ AV +AGY  PTPIQ + IP  L+  DV GIAQTGTGKTASF LPM+TI
Sbjct: 4   FSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMITI 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  L+ ALLIGG+ F  Q+K ++RG
Sbjct: 64  LGKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDRG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           +SATM  E+++++  FL    +IEV   ++T+ETIE   +          ++ K A+L+ 
Sbjct: 184 YSATMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKERSFADKRAVLRA 243

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L++++ +   N IIFCN+K +V  +  SL++ GF+   IHG+++Q  RMK L  F++G++
Sbjct: 244 LIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDGFRDGSL 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+VASD+AARGLDIP V HVFNFDVP   E+Y+HRIGRTGRAGR GKA+T+    D KH
Sbjct: 304 HLLVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKGKAYTIAVPSDEKH 363

Query: 357 IDAIEKLIEKKV 368
           + AIE L+++ +
Sbjct: 364 VTAIESLVKQAI 375


>gi|254487565|ref|ZP_05100770.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
 gi|214044434|gb|EEB85072.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
          Length = 533

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/438 (48%), Positives = 301/438 (68%), Gaps = 10/438 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T+
Sbjct: 4   FSDLNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPMITM 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ NLT ALLIGG+ F  Q+K +++G
Sbjct: 64  LARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLNLTKALLIGGVSFGEQDKLIDKG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR++DHF RGKL++++++I+V+DEADRMLDMGFIP I+ I  + PFTRQTL 
Sbjct: 124 VDVLIATPGRLIDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFQMTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           FSATM  E+++++  FL NP RIEV   ++T E IE   +   A     + ++K  +L+ 
Sbjct: 184 FSATMAPEIERITNTFLSNPVRIEVARQATTGENIEQGVLMFKASRKDREATEKRKVLRA 243

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+ ++ D   N IIFCN+K +V  +  SL+K G+    IHG++DQ  R K L  F+ G +
Sbjct: 244 LIDAEGDKCTNAIIFCNRKMDVDTVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFRNGDL 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VASD+AARGLD+P V HV+NFDVP+ AE+Y+HRIGRTGRAGR GKA  +    D K+
Sbjct: 304 RFLVASDVAARGLDVPSVSHVYNFDVPSHAEDYVHRIGRTGRAGRDGKAIMICVPRDEKN 363

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPP--LEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           ++ +E+L+++++  L+  L    P    ++ D  +   A K    P+  T   +R +  S
Sbjct: 364 LEDVERLVQREIPRLDNPLGGDAPAETTKEADAPKAEDAPKAEDAPK--TEKPKRSRTRS 421

Query: 415 SQKSHIPLKESEKISKLQ 432
            +K   P  E+ K+  ++
Sbjct: 422 RKKDDAPKDETPKVDAVE 439


>gi|221638948|ref|YP_002525210.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides KD131]
 gi|221159729|gb|ACM00709.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides KD131]
          Length = 524

 Score =  435 bits (1118), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/372 (55%), Positives = 275/372 (73%), Gaps = 6/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L P+V+ AV +AGY  PTPIQ + IP  L+  DV GIAQTGTGKTASF LPM+TI
Sbjct: 4   FSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMITI 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  L+ ALLIGG+ F  Q+K ++RG
Sbjct: 64  LGKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDRG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           +SATM  E+++++  FL    +IEV   ++T+ETIE   +          ++ K A+L+ 
Sbjct: 184 YSATMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKERSFADKRAVLRA 243

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L++++ +   N IIFCN+K +V  +  SL++ GF+   IHG+++Q  RMK L  F++G++
Sbjct: 244 LIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDGFRDGSL 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+VASD+AARGLDIP V HVFNFDVP   E+Y+HRIGRTGRAGR GKA+T+    D KH
Sbjct: 304 HLLVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKGKAYTIAVPSDEKH 363

Query: 357 IDAIEKLIEKKV 368
           + AIE L+++ +
Sbjct: 364 VTAIESLVKQAI 375


>gi|126729580|ref|ZP_01745393.1| ATP-dependent RNA helicase RhlE [Sagittula stellata E-37]
 gi|126709699|gb|EBA08752.1| ATP-dependent RNA helicase RhlE [Sagittula stellata E-37]
          Length = 469

 Score =  435 bits (1118), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/376 (55%), Positives = 277/376 (73%), Gaps = 6/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL LSPKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+  
Sbjct: 4   FSDLDLSPKVLKAIEEAGYTTPTPIQAGAIPHALEGKDVLGIAQTGTGKTASFTLPMIHK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+  +++G
Sbjct: 64  LARGRARARMPRSLVLCPTRELAAQVAENFDTYSKHVKLTKALLIGGVSFKEQDVLIDKG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKLL+  IEI+V+DEADRMLDMGFIP I+ I SL PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           FSATM  E+++++  FL  P RIEV   ++ +ETI    V         + S+K A+L+ 
Sbjct: 184 FSATMAPEIERITNTFLSAPARIEVARQATASETITQGAVVFTPSRRDRESSEKRAVLRA 243

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+ ++ +   N IIFCN+K +V  +  SL K G++   IHG++DQ  R + L  F++G++
Sbjct: 244 LIDAEGEACSNAIIFCNRKVDVDIVAKSLTKYGYNAAPIHGDLDQSQRTRTLDGFRDGSV 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++ASD+AARGLDIP V HVFNFDVP+ AE+Y+HRIGRTGRAGR GKA+T+    D K+
Sbjct: 304 RLLIASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRIGRTGRAGRSGKAYTICTPRDEKY 363

Query: 357 IDAIEKLIEKKVDWLN 372
            DA+EKL++K++  L+
Sbjct: 364 FDAVEKLLQKEIPRLD 379


>gi|126461963|ref|YP_001043077.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126103627|gb|ABN76305.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 516

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/372 (55%), Positives = 275/372 (73%), Gaps = 6/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L P+V+ AV +AGY  PTPIQ + IP  L+  DV GIAQTGTGKTASF LPM+TI
Sbjct: 4   FSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMITI 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  L+ ALLIGG+ F  Q+K ++RG
Sbjct: 64  LGKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDRG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           +SATM  E+++++  FL    +IEV   ++T+ETIE   +          ++ K A+L+ 
Sbjct: 184 YSATMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKERSFADKRAVLRA 243

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L++++ +   N IIFCN+K +V  +  SL++ GF+   IHG+++Q  RMK L  F++G++
Sbjct: 244 LIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDGFRDGSL 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+VASD+AARGLDIP V HVFNFDVP   E+Y+HRIGRTGRAGR GKA+T+    D KH
Sbjct: 304 HLLVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKGKAYTIAVPSDEKH 363

Query: 357 IDAIEKLIEKKV 368
           + AIE L+++ +
Sbjct: 364 VTAIESLVKQAI 375


>gi|77463091|ref|YP_352595.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides 2.4.1]
 gi|77387509|gb|ABA78694.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides 2.4.1]
          Length = 518

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/372 (55%), Positives = 275/372 (73%), Gaps = 6/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L P+V+ AV +AGY  PTPIQ + IP  L+  DV GIAQTGTGKTASF LPM+TI
Sbjct: 6   FSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMITI 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  L+ ALLIGG+ F  Q+K ++RG
Sbjct: 66  LGKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDRG 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL 
Sbjct: 126 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 185

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           +SATM  E+++++  FL    +IEV   ++T+ETIE   +          ++ K A+L+ 
Sbjct: 186 YSATMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKERSFADKRAVLRA 245

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L++++ +   N IIFCN+K +V  +  SL++ GF+   IHG+++Q  RMK L  F++G++
Sbjct: 246 LIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDGFRDGSL 305

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+VASD+AARGLDIP V HVFNFDVP   E+Y+HRIGRTGRAGR GKA+T+    D KH
Sbjct: 306 HLLVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKGKAYTIAVPSDEKH 365

Query: 357 IDAIEKLIEKKV 368
           + AIE L+++ +
Sbjct: 366 VTAIESLVKQAI 377


>gi|255261571|ref|ZP_05340913.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
 gi|255103906|gb|EET46580.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
          Length = 499

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/384 (53%), Positives = 280/384 (72%), Gaps = 6/384 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L  KV+ AV DAGY +PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+++
Sbjct: 4   FSDLNLDRKVLSAVEDAGYTEPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMISM 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++GRAR RMPR+L+L PTRELAAQVA+NF+ Y KN  LT ALLIGG+ F+ Q++ ++RG
Sbjct: 64  LKRGRARARMPRSLVLAPTRELAAQVAENFDVYAKNTKLTKALLIGGVSFKEQDQLIDRG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I  L PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           FSATM  E+++++  FL NP ++EV   ++T++TI    V         + S+K  LL+ 
Sbjct: 184 FSATMAPEIERITNTFLSNPAKVEVARAATTSDTITQSVVMFKGSRKDRESSEKRQLLRT 243

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +++++ D  +NGIIFCN+K +V  +  S++K G     IHG++DQ  RM+ L+ F++GT+
Sbjct: 244 MIENEGDKCRNGIIFCNRKVDVDIVAKSMKKYGLDASPIHGDLDQSKRMETLAAFRDGTL 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VASD+AARGLDIP+V HVFN+DVP+ AE+Y+HRIGRTGRAG+ G A  +    D K+
Sbjct: 304 RFLVASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGKLGTAMMICVPRDEKN 363

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNP 380
           +  IE+L++ ++    G   +  P
Sbjct: 364 LGDIERLVKMEIPRGEGSRDTTAP 387


>gi|254293945|ref|YP_003059968.1| DEAD/DEAH box helicase [Hirschia baltica ATCC 49814]
 gi|254042476|gb|ACT59271.1| DEAD/DEAH box helicase domain protein [Hirschia baltica ATCC 49814]
          Length = 478

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/375 (56%), Positives = 273/375 (72%), Gaps = 2/375 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L P+V+ AV + GY +PTPIQ + IP ++Q  DV GIAQTGTGKTA+FVLPM+
Sbjct: 1   MTFDDLDLDPRVLSAVKETGYTEPTPIQAQAIPAIIQGRDVTGIAQTGTGKTAAFVLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +GRA+ RMPRTLILEPTRELAAQVADNFEKYG N+ L +ALLIGG+ F  Q+KKL 
Sbjct: 61  HKLGQGRAKARMPRTLILEPTRELAAQVADNFEKYGVNHKLNMALLIGGVSFADQDKKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR++DHF RG+LLM  +++LVIDEADRMLDMGFIP I+ I  L+P  RQT
Sbjct: 121 AGVDVLIATPGRLMDHFERGRLLMTGVQMLVIDEADRMLDMGFIPDIEKICKLLPPRRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLL 239
           LLFSATM  E+ K+++ F  +PK+IEV  P+ TAE I +H   +   +   K  +L+ ++
Sbjct: 181 LLFSATMPPEIAKLTKQFQNDPKQIEVARPAQTAELITQHVTKSPSDKDEIKRGILRAII 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S + +KNGI+FCN+K+ V  +  SL   GF    IHG++ Q  RM+ L  FK G + L+
Sbjct: 241 ASCE-VKNGIVFCNRKREVDIVAKSLNAHGFDAAPIHGDLSQSYRMETLEKFKNGDLTLL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLDIPDVGHVFN+  P  +++Y+HRIGRTGRAGR G+++T+V+  D K  DA
Sbjct: 300 VASDVAARGLDIPDVGHVFNYAPPPNSDDYVHRIGRTGRAGRTGESYTIVSPRDQKLWDA 359

Query: 360 IEKLIEKKVDWLNGD 374
           + K I K V+    D
Sbjct: 360 VVKRISKDVEEFTND 374


>gi|310816695|ref|YP_003964659.1| putative ATP-dependent RNA helicase RhlE [Ketogulonicigenium
           vulgare Y25]
 gi|308755430|gb|ADO43359.1| putative ATP-dependent RNA helicase RhlE [Ketogulonicigenium
           vulgare Y25]
          Length = 517

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/416 (51%), Positives = 284/416 (68%), Gaps = 15/416 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+DL L PKV+ AV +AGY  PTPIQ   IP  L   DV GIAQTGTGKTASF LPM+ 
Sbjct: 3   EFSDLNLDPKVLQAVAEAGYTTPTPIQAGAIPEALAGRDVLGIAQTGTGKTASFTLPMIQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K   LT ALLIGG+ F+ Q+  ++R
Sbjct: 63  LLSRGRARARMPRSLVLCPTRELAAQVAENFDMYAKYTKLTKALLIGGVSFKDQDTLIDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I  + PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFQMTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-----ATYAQYSKKCALLQ 236
            FSATM  E+++++  FL  P RIEV   ++T + I    V     +   + S+K A+L+
Sbjct: 183 FFSATMAPEIERITNTFLSAPARIEVARAATTNQNITQAVVQFKGSSKEREPSEKRAVLR 242

Query: 237 QLLQSQD-TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L++++  T+ N IIFCN+K +V  +  SL+K G++   IHG++DQ  RM+ L  F++G+
Sbjct: 243 ALIEAESATLTNAIIFCNRKIDVDIVAKSLKKYGYNAEPIHGDLDQSQRMRTLDGFRDGS 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VASD+AARGLDIP V HVFNFDVP+ AE+Y+HRIGRTGRAGR G  F +    D K
Sbjct: 303 VKFLVASDVAARGLDIPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRTGSTFMICVPRDEK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           ++ AIE L++  +  +   L  L PP  K         R   P   K T   RR+K
Sbjct: 363 NLAAIEALVQSTITRVESPLKEL-PPARK--------PRAEKPAEDKQTERPRREK 409


>gi|89053691|ref|YP_509142.1| DEAD/DEAH box helicase-like [Jannaschia sp. CCS1]
 gi|88863240|gb|ABD54117.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1]
          Length = 644

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/390 (53%), Positives = 280/390 (71%), Gaps = 6/390 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L+PKV  A+++AGY  PTPIQ   IP  L   DV GIAQTGTGKTASF LPM+T+
Sbjct: 13  FADLDLNPKVQKAIVEAGYESPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMITM 72

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q + +++G
Sbjct: 73  LARGRARARMPRSLVLCPTRELAAQVAENFDIYAKHVKLTKALLIGGVSFKEQEQAIDKG 132

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKL++N+++++V+DEADRMLDMGFIP I+ I  LVPFTRQTL 
Sbjct: 133 VDVLIATPGRLLDHFERGKLILNDVKVMVVDEADRMLDMGFIPDIERIFGLVPFTRQTLF 192

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-----TYAQYSKKCALLQQ 237
           FSATM  E+++++  FL NP++IEV   S+T+ TIE   +        AQ   K  +L+ 
Sbjct: 193 FSATMAPEIERITNTFLSNPEKIEVERQSTTSATIEQRLIEFKAPRRDAQAKMKRDMLRA 252

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            + ++ D  +N IIFCN+K +V  +  SL+K   +   IHG++DQ  RM+ L+ F++G+I
Sbjct: 253 AITAEGDAFRNAIIFCNRKVDVDIVAKSLKKHNLNAEPIHGDLDQSHRMRTLAGFRDGSI 312

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+VASD+AARGLDIP+V HV N+DVP+ AE+Y+HRIGRTGRAG+ G A TL    D K+
Sbjct: 313 TLLVASDVAARGLDIPNVSHVINYDVPSHAEDYVHRIGRTGRAGKTGVAITLCVPSDEKY 372

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
           + AIE LI++ +      + +  P  E  D
Sbjct: 373 LGAIEGLIKQPIPRAEAPMDAGTPKAETED 402


>gi|260574781|ref|ZP_05842784.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
 gi|259023198|gb|EEW26491.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
          Length = 537

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/372 (55%), Positives = 274/372 (73%), Gaps = 6/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L P+V+ AVL+AGY  PTPIQ + IP  L   DV GIAQTGTGKTASFVLPM+T+
Sbjct: 4   FSDLALDPRVLQAVLEAGYETPTPIQAQAIPHALAGRDVLGIAQTGTGKTASFVLPMITL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRA+ RMPR+L+L PTRELAAQVA+NFE Y K   LT ALLIGG+ F  Q+K ++RG
Sbjct: 64  LGQGRAKARMPRSLVLCPTRELAAQVAENFETYAKYSKLTKALLIGGVSFGEQDKLIDRG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDH  RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQT  
Sbjct: 124 VDVLIATPGRLLDHHERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTFF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           +SATM  E+++++  FL N  +IEV   ++++ETIE   +          ++ K A+L+ 
Sbjct: 184 YSATMAPEIERITNTFLSNAVKIEVARQATSSETIEQALIQITPTRKDRSFADKRAVLRA 243

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L++++ +   N IIFCN+K +V  +  SL++ GF+   IHG++DQ  R + L  F++GT+
Sbjct: 244 LIRAEGEACTNAIIFCNRKMDVDVVSKSLKQHGFNASPIHGDLDQSVRTRTLDGFRDGTV 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+VASD+AARGLDIP V HVFNFDVP+  E+Y+HRIGRTGRAGR GKAFT+    D K+
Sbjct: 304 HLLVASDVAARGLDIPAVSHVFNFDVPSHPEDYVHRIGRTGRAGRKGKAFTIATPYDDKY 363

Query: 357 IDAIEKLIEKKV 368
           + AIE L+++ +
Sbjct: 364 LAAIEHLVKQPI 375


>gi|114569874|ref|YP_756554.1| DEAD/DEAH box helicase domain-containing protein [Maricaulis maris
           MCS10]
 gi|114340336|gb|ABI65616.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10]
          Length = 498

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/426 (50%), Positives = 296/426 (69%), Gaps = 18/426 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+LGLSPK++ A+ +AGY +PTPIQ   IP  L   DV GIAQTGTGKTASF LP++
Sbjct: 1   MTFAELGLSPKLLEAIQEAGYSEPTPIQAGAIPAALAGRDVLGIAQTGTGKTASFTLPLI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +GRA+ RMPR+LI+ PTRELAAQ A+NFE Y K   L++ALLIGG+ F  Q + L 
Sbjct: 61  ERLSRGRAKARMPRSLIIAPTRELAAQCAENFETYSKGQKLSMALLIGGVAFGPQEEILN 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--R 178
           +GADVLI TPGR+LDHF RGKLLM  +++LV+DEADRMLDMGFIP ++ I SLVP    R
Sbjct: 121 KGADVLIATPGRLLDHFGRGKLLMTGVQMLVVDEADRMLDMGFIPDLEKIFSLVPPAPRR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV--ATYAQYSKKCALLQ 236
           QTL FSATM  E+Q + + FL++P+R+EV+ P+ T   I    +     +  +K+ AL Q
Sbjct: 181 QTLFFSATMPKEIQSLVDRFLRDPERVEVSRPAQTGANITQLMIRLTDNSAKAKRLALRQ 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +  S++ +KNGIIF N+K++V  +  SL++ GFS   IHG++DQ +R   L++FK GT+
Sbjct: 241 AM--SREGVKNGIIFSNRKRDVDVVARSLQRHGFSAAPIHGDLDQSARTATLADFKAGTL 298

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VASD+AARGLDIPDV HVFN+D+P+ A++Y+HRIGRTGRAG+ G++ T+ A  D K 
Sbjct: 299 RFLVASDVAARGLDIPDVSHVFNYDMPHHADDYVHRIGRTGRAGKSGESVTIFAPGDEKS 358

Query: 357 IDAIEKLIEKKVDWL----NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           + A+ KLI++++  L    NGD      P  K   A    A+     P+ ++   R +K 
Sbjct: 359 LAAVLKLIKEEIPELVLDGNGDA-----PASK---ASSPDAKSEAAAPKTASTRTRTRKP 410

Query: 413 YSSQKS 418
             S+KS
Sbjct: 411 RVSRKS 416


>gi|259416782|ref|ZP_05740702.1| ATP-dependent RNA helicase RhlE [Silicibacter sp. TrichCH4B]
 gi|259348221|gb|EEW59998.1| ATP-dependent RNA helicase RhlE [Silicibacter sp. TrichCH4B]
          Length = 490

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/443 (51%), Positives = 304/443 (68%), Gaps = 16/443 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T 
Sbjct: 4   FTDLNLNPKVLKAIEEAGYESPTPIQAGAIPAALEGRDVLGIAQTGTGKTASFTLPMITR 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+  ++RG
Sbjct: 64  LARGRARARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDAAIDRG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKLL+  IEI+V+DEADRMLDMGFIP I+ I SL PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           FSATM  E+++++  FL  P+R+E+   ++T+ETIE   V   A     + S+K  +L++
Sbjct: 184 FSATMAPEIERITNTFLSGPERVEIARQATTSETIEQAVVMFKASRKDREGSEKRRVLRE 243

Query: 238 LL-QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+ Q  + +KN IIFCN+K +V  +  SL+K G+    IHG++DQ  R K L  F++GT+
Sbjct: 244 LINQEGEAVKNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLDGFRDGTL 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VASD+AARGLD+P V HVFNFDVP  AE+Y+HRIGRTGRAGR+GKA TL +  D K 
Sbjct: 304 KILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGRNGKAITLCSPRDEKA 363

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +DA+E L++K++  L    + + P   K   A    A  + P P +     R +   ++ 
Sbjct: 364 LDAVEGLVQKEITRLE---NPVKPTPRK--TATKEDATSDKPKPAR-----RSRSKTTAA 413

Query: 417 KSHIPLKESEKISKLQQDIQEND 439
           KS  P  E+   +  QQ  Q  D
Sbjct: 414 KSEEPPVEAAAQTTEQQPQQAQD 436


>gi|146278024|ref|YP_001168183.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145556265|gb|ABP70878.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 507

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/372 (55%), Positives = 274/372 (73%), Gaps = 6/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L P+V+ AV +AGY  PTPIQ + IP  L+  DV GIAQTGTGKTASF LPM+TI
Sbjct: 4   FSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMITI 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  L+ ALLIGG+ F  Q+K ++RG
Sbjct: 64  LGKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDRG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           +SATM  E+++++  FL    +IEV   ++T+ETIE   +          ++ K A+L+ 
Sbjct: 184 YSATMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQITPTRKERSFADKRAVLRA 243

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L++++ +   N IIFCN+K +V  +  SL++ GF+   IHG++DQ  R K L  F++GT+
Sbjct: 244 LIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLDQSQRTKTLDGFRDGTL 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+VASD+AARGLDIP V HVFNFD+P   E+Y+HRIGRTGRAGR GKAF++    D K+
Sbjct: 304 HLLVASDVAARGLDIPAVSHVFNFDLPTHPEDYVHRIGRTGRAGRKGKAFSIAVPSDEKY 363

Query: 357 IDAIEKLIEKKV 368
           + AIE L+++ +
Sbjct: 364 LAAIESLVKQAI 375


>gi|163746995|ref|ZP_02154351.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161379556|gb|EDQ03969.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 529

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/388 (52%), Positives = 280/388 (72%), Gaps = 6/388 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L+ KV+ AV++AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPML++
Sbjct: 4   FTDLNLNAKVLKAVVEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMLSL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+K +++G
Sbjct: 64  LARGRARARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQDKLIDKG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKL++++++++V+DEADRMLDMGFIP I+ I  L PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           FSATM  E+++++  FL NP+RIEV   ++T+E I    V   A     + ++K  LL+ 
Sbjct: 184 FSATMAPEIERITNTFLSNPERIEVARQATTSENITQGVVMFKASRKDREATEKRKLLRM 243

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+ ++ +   N IIFCN+K +V  +  SL+K G+    IHG++DQ  R K L  F+ G +
Sbjct: 244 LIDAEGEKCTNAIIFCNRKMDVDTVAKSLKKHGYDAAPIHGDLDQSQRTKTLDGFRNGEL 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++ASD+AARGLD+P V HVFNFDVP+ AE+Y+HRIGRTGRAGR GKA  +    D K+
Sbjct: 304 RFLIASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGKAIMICVPRDEKN 363

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
            + +E+L++K++  L   L +  P  E+
Sbjct: 364 FEDVERLVQKEIPRLENLLQTDAPAPEE 391


>gi|254462976|ref|ZP_05076392.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
           HTCC2083]
 gi|206679565|gb|EDZ44052.1| ATP-dependent RNA helicase RhlE [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 495

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/430 (50%), Positives = 292/430 (67%), Gaps = 15/430 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L PKV+ A+ DAGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T+
Sbjct: 4   FSDLNLDPKVLKAIDDAGYESPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFTLPMITM 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           L KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K +  L+ ALLIGG+ F+ Q++ +++
Sbjct: 64  LGKGRARARMPRSLVLCPTRELAAQVAENFDTYTKYHKKLSKALLIGGVSFKEQDRLIDK 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDH  RGKLL+  ++++V+DEADRMLDMGFIP I+ I  L PFTRQTL
Sbjct: 124 GVDVLIATPGRLLDHVERGKLLLTGVQVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTL 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQ 236
            FSATM  E+++++  FL NP R+EV   ++ +E IE   +         + ++K   L+
Sbjct: 184 FFSATMAPEIERITNTFLSNPARVEVARQATASENIEQVVMMFKGSRKDREGTEKRKALR 243

Query: 237 QLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +L+ ++ D   N IIFCN+K +V  +  SL+K G+    IHG++DQ  R K L  F+EG 
Sbjct: 244 KLIDAEGDACTNAIIFCNRKMDVDVVAKSLKKYGYDAAPIHGDLDQSQRTKTLDGFREGG 303

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VASD+AARGLD+P V HVFNFDVP+ AE+Y+HRIGRTGRAGR GKA  +    D K
Sbjct: 304 LRFLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGKAVMICVPRDEK 363

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR-RKKNYS 414
           + DAIEKLI+K++       + ++ PL+  D    + AR +   P +     R R ++ +
Sbjct: 364 NFDAIEKLIQKQI-------TRIDNPLKPADAPAPSEARADGASPAREDKPKRTRARSRN 416

Query: 415 SQKSHIPLKE 424
             K   P  E
Sbjct: 417 KPKDDSPKTE 426


>gi|254476293|ref|ZP_05089679.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
 gi|214030536|gb|EEB71371.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
          Length = 501

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/372 (54%), Positives = 276/372 (74%), Gaps = 6/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T+
Sbjct: 4   FSDLNLNPKVLKAIEEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ NLT ALLIGG+ F+ Q+  +++G
Sbjct: 64  LARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLNLTKALLIGGVSFKEQDALIDKG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKL++++++++V+DEADRMLDMGFIP I+ I  L PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           FSATM  E+++++  FL  P+RIEV   ++T+E I    V   A     + S+K  LL+ 
Sbjct: 184 FSATMAPEIERITNTFLSAPERIEVARQATTSENITQGVVLFKASRRDREGSEKRKLLRH 243

Query: 238 LL-QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+ Q  +   N IIFCN+K +V     SL+K G++   IHG++DQ  RMK L  F+EG +
Sbjct: 244 LIDQEGEKCTNAIIFCNRKTDVDICAKSLKKYGYNAAPIHGDLDQSQRMKTLDEFREGNL 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VASD+AARGLD+P V HVFNFDVP+ AE+Y+HRIGRTGRAGR G A  +   +D K+
Sbjct: 304 RFLVASDVAARGLDVPTVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGTAMMICVPKDEKN 363

Query: 357 IDAIEKLIEKKV 368
           ++ IE+L+++++
Sbjct: 364 LEDIERLVQQEI 375


>gi|85703303|ref|ZP_01034407.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. 217]
 gi|85672231|gb|EAQ27088.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. 217]
          Length = 515

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/402 (51%), Positives = 281/402 (69%), Gaps = 7/402 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L+PKV+ A+ +AGY  PTPIQ + IP  LQ  DV GIAQTGTGKTASF LPML++
Sbjct: 4   FSDLNLNPKVLKAIEEAGYETPTPIQAEAIPHALQGRDVLGIAQTGTGKTASFTLPMLSL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+K +++G
Sbjct: 64  LSRGRARARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQDKLIDKG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY-----SKKCALLQQ 237
           FSATM  E+++++  FL NP R+EV   ++ +ETIE   V           S+K  LL+ 
Sbjct: 184 FSATMAPEIERITNTFLSNPARVEVARQATASETIEQGVVMFKPTRRENADSEKRRLLRA 243

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+  + +   N IIFCN+K +V  +  SL K G+    IHG+++Q  R + L  F+ GT+
Sbjct: 244 LIDREGEACSNAIIFCNRKVDVDVVSKSLIKYGYDAAPIHGDLEQSQRTRTLDGFRAGTL 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++ASD+AARGLD+P V HVFNFDVP+ AE+Y+HRIGRTGRAGR GKA  +    D K+
Sbjct: 304 RFLIASDVAARGLDVPAVSHVFNFDVPSHAEDYVHRIGRTGRAGRAGKALMICNPRDEKN 363

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           +  +E L++K++  +   + +L  P    +  Q +  R   P
Sbjct: 364 LAGVEALLQKEIPRVESPI-TLGAPTTNAEPPQGSDERPVKP 404


>gi|110680443|ref|YP_683450.1| ATP-dependent RNA helicase, putative [Roseobacter denitrificans OCh
           114]
 gi|109456559|gb|ABG32764.1| ATP-dependent RNA helicase, putative [Roseobacter denitrificans OCh
           114]
          Length = 505

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/411 (50%), Positives = 288/411 (70%), Gaps = 10/411 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L+PKV+ A+ +AGY  PTPIQ   IP  L   DV GIAQTGTGKTASF LPM+T+
Sbjct: 24  FSELNLNPKVLKAIDEAGYETPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMITL 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+K +++G
Sbjct: 84  LARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDKLIDKG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL 
Sbjct: 144 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           FSATM  E+++++  FL  P+RIEV   ++T+ETIE   +   A     + ++K  +L+ 
Sbjct: 204 FSATMAPEIERITNTFLSAPERIEVARQATTSETIEQGVLMFKASRKDREGTEKRKVLRA 263

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+ ++ +   N I+FCN+K +V  +  SL+K  +    IHG++DQ  R + L  F++G++
Sbjct: 264 LIDAEGEKCTNAIVFCNRKTDVDIVAKSLKKYNYDAAPIHGDLDQSQRTRTLDGFRDGSL 323

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++ASD+AARGLD+P V HVFNFDVP  AE+Y+HRIGRTGRAGR GKA  +    D ++
Sbjct: 324 KFLIASDVAARGLDVPAVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAIMICVPRDERN 383

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKID----IAQHNHARKNNPIPQKS 403
           ++ IE+L+++++  L+  L +   P EK       A     R     P+KS
Sbjct: 384 LEDIERLVQREIPRLDNPLGTKEAPKEKAPDGEAAASEKPKRTRTRAPRKS 434


>gi|83942648|ref|ZP_00955109.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. EE-36]
 gi|83846741|gb|EAP84617.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. EE-36]
          Length = 559

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 199/379 (52%), Positives = 278/379 (73%), Gaps = 6/379 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T+
Sbjct: 24  FSDLNLNPKVLKAIDEAGYETPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPMITL 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F  Q+K +++G
Sbjct: 84  LARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFGEQDKLIDKG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR++DHF RGKL++++++I+V+DEADRMLDMGFIP I+ I  + PFTRQTL 
Sbjct: 144 VDVLIATPGRLIDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFQMTPFTRQTLF 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           FSATM  E+++++  FL  P+RIEV   ++T+E IE   +   A     + ++K  +L+ 
Sbjct: 204 FSATMAPEIERITNTFLSAPERIEVARQATTSENIEQGVLMFKASRKDREATEKRKVLRA 263

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+ ++ D   N IIFCN+K +V  +  SL+K G+    IHG++DQ  R K L  F+ G +
Sbjct: 264 LIDAEGDKCTNAIIFCNRKMDVDTVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFRNGDL 323

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VASD+AARGLD+P V HV+N+DVP+ AE+Y+HRIGRTGRAGR GKA  +    D K+
Sbjct: 324 RFLVASDVAARGLDVPSVSHVYNYDVPSHAEDYVHRIGRTGRAGRDGKAIMICVPRDEKN 383

Query: 357 IDAIEKLIEKKVDWLNGDL 375
           ++ +E+L+++++  L+  L
Sbjct: 384 LEDVERLVQREIPRLDNPL 402


>gi|83953889|ref|ZP_00962610.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. NAS-14.1]
 gi|83841834|gb|EAP81003.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. NAS-14.1]
          Length = 554

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 199/379 (52%), Positives = 278/379 (73%), Gaps = 6/379 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T+
Sbjct: 24  FSDLNLNPKVLKAINEAGYETPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPMITL 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F  Q+K +++G
Sbjct: 84  LARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFGEQDKLIDKG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR++DHF RGKL++++++I+V+DEADRMLDMGFIP I+ I  + PFTRQTL 
Sbjct: 144 VDVLIATPGRLIDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFQMTPFTRQTLF 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           FSATM  E+++++  FL  P+RIEV   ++T+E IE   +   A     + ++K  +L+ 
Sbjct: 204 FSATMAPEIERITNTFLSAPERIEVARQATTSENIEQGVLMFKASRKDREATEKRKVLRA 263

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+ ++ D   N IIFCN+K +V  +  SL+K G+    IHG++DQ  R K L  F+ G +
Sbjct: 264 LIDAEGDKCTNAIIFCNRKMDVDTVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFRNGDL 323

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VASD+AARGLD+P V HV+N+DVP+ AE+Y+HRIGRTGRAGR GKA  +    D K+
Sbjct: 324 RFLVASDVAARGLDVPSVSHVYNYDVPSHAEDYVHRIGRTGRAGRDGKAIMICVPRDEKN 383

Query: 357 IDAIEKLIEKKVDWLNGDL 375
           ++ +E+L+++++  L+  L
Sbjct: 384 LEDVERLVQREIPRLDNPL 402


>gi|163795533|ref|ZP_02189499.1| Superfamily II DNA and RNA helicase [alpha proteobacterium BAL199]
 gi|159179132|gb|EDP63665.1| Superfamily II DNA and RNA helicase [alpha proteobacterium BAL199]
          Length = 521

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/420 (50%), Positives = 292/420 (69%), Gaps = 26/420 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS +VV AV+ +GY KPTPIQ K IP VL   DV G AQTGTGKTASF LPM+ I
Sbjct: 8   FADLGLSDEVVSAVVTSGYTKPTPIQEKAIPYVLMGRDVLGCAQTGTGKTASFTLPMIDI 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  GRA+ RMPR+LI+ PTRELAAQV++NF KYG+N  L++ALLIGG+    Q  KL+RG
Sbjct: 68  LSAGRAKARMPRSLIIAPTRELAAQVSENFVKYGQNTRLSMALLIGGVSMGDQEAKLDRG 127

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RG++L+ +++ILVIDEADRMLDMGFIP ++ I SL+P  RQTL 
Sbjct: 128 VDVLIATPGRLLDHFERGRILLTDVKILVIDEADRMLDMGFIPDVERIVSLLPTIRQTLF 187

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL------LQ 236
           FSATM  E++++++ FL NPK + V+ P+S AE +        AQ+  +C++      L+
Sbjct: 188 FSATMAPEIKRLADKFLMNPKEVSVDAPASAAENV--------AQHLVRCSVKDKRDALR 239

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL+S+ T+ + +IFCN+K+++  L  SL++ G     +HG++ Q +R + L+ FK G  
Sbjct: 240 SLLKSE-TVDSALIFCNRKRDIGVLHRSLQRYGIEAVQLHGDMSQPARTETLAKFKAGEA 298

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++ SD+AARG+DI  + HVFNFDVP+ AE+Y+HRIGRTGRAG  G+AFTL   ED K 
Sbjct: 299 RLVICSDVAARGIDIKGLSHVFNFDVPSHAEDYVHRIGRTGRAGLSGRAFTLATPEDSKL 358

Query: 357 IDAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           + A+E+LI  K+  +  D     ++ + P E +++A   +       P + TG  R  ++
Sbjct: 359 LSAVERLIGMKIPVIQLDGAAPAAAESRPAETVELASETN-------PPRKTGRGRGARS 411


>gi|159043882|ref|YP_001532676.1| DEAD/DEAH box helicase domain-containing protein [Dinoroseobacter
           shibae DFL 12]
 gi|157911642|gb|ABV93075.1| DEAD/DEAH box helicase domain protein [Dinoroseobacter shibae DFL
           12]
          Length = 493

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/374 (54%), Positives = 270/374 (72%), Gaps = 8/374 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L PKV+ A+ +AGY  PTPIQ + IP  L+  DV GIAQTGTGKTASF LPM+T+
Sbjct: 4   FSDLNLDPKVLKAISEAGYDTPTPIQAEAIPPALEGRDVLGIAQTGTGKTASFTLPMITM 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+  +++G
Sbjct: 64  LRKGRARARMPRSLVLAPTRELAAQVAENFDIYAKHTKLTKALLIGGVSFKEQDLLIDKG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKL++ +++++V+DEADRMLDMGFIP I+ I  L PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIEKIFQLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-------TYAQYSKKCALL 235
           FSATM  E+++++  FL NP R+EV   S+T+ETI    V            + +K  +L
Sbjct: 184 FSATMAPEIERITNTFLSNPARVEVARQSTTSETITQGLVQFKPSRRDRATAFKEKREML 243

Query: 236 QQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + L++ + D  +N IIFCN+K +V  +  SL K G+    IHG+++Q  R K L  F++G
Sbjct: 244 RALIEREGDGCRNAIIFCNRKMDVDVVAKSLIKHGYDAAPIHGDLEQSQRTKTLDQFRDG 303

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           T++ +VASD+AARGLDIP+V HVFNFDVP+ AE+Y+HRIGRTGRAGR G    L    D 
Sbjct: 304 TLKFLVASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRIGRTGRAGRKGTTLMLAVPADD 363

Query: 355 KHIDAIEKLIEKKV 368
           K + AIE L++ ++
Sbjct: 364 KLLAAIEDLVKLEI 377


>gi|126727175|ref|ZP_01743012.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
           HTCC2150]
 gi|126703603|gb|EBA02699.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
           HTCC2150]
          Length = 574

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/368 (54%), Positives = 261/368 (70%), Gaps = 6/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L PKV+ AV + GY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+++
Sbjct: 4   FSELSLDPKVLKAVAETGYESPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPMISL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K   LT ALLIGG+ F+ Q+K ++RG
Sbjct: 64  LSKGRARARMPRSLVLAPTRELAAQVAENFDAYSKYSKLTKALLIGGVSFKEQDKLIDRG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDH  RGKLL+  ++I+V+DEADRMLDMGFIP I+ I  L PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHVERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFKLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA------TYAQYSKKCALLQ 236
           FSATM  E+++++  FL  P ++EV   ++T+ETI    +        +    K+  L  
Sbjct: 184 FSATMAPEIERITNTFLSAPVKVEVARAATTSETITQGLIWHEPKRREFGAKDKRNILRA 243

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +    +   N IIFCN+K  V  +  SL+K G++   IHG++DQ  RMK+L+ F+EG I
Sbjct: 244 TIEAEGEKCTNAIIFCNRKVEVDIVAKSLKKHGYNAEPIHGDLDQSHRMKVLNGFREGEI 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + + ASD+AARGLDIP+V HVFNFDVP  AE+Y+HRIGRTGRAGR G AFT+    D K 
Sbjct: 304 RFLCASDVAARGLDIPNVSHVFNFDVPGHAEDYVHRIGRTGRAGRTGTAFTIATPNDAKQ 363

Query: 357 IDAIEKLI 364
           + A+E+L+
Sbjct: 364 LAAVEELV 371


>gi|163738820|ref|ZP_02146234.1| ATP-dependent RNA helicase, putative [Phaeobacter gallaeciensis
           BS107]
 gi|163741469|ref|ZP_02148860.1| ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis 2.10]
 gi|161385203|gb|EDQ09581.1| ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis 2.10]
 gi|161388148|gb|EDQ12503.1| ATP-dependent RNA helicase, putative [Phaeobacter gallaeciensis
           BS107]
          Length = 516

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/379 (53%), Positives = 275/379 (72%), Gaps = 6/379 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T+
Sbjct: 4   FSDLNLNPKVLKAIEEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+  +++G
Sbjct: 64  LARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDTLIDKG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKL++++++++V+DEADRMLDMGFIP I+ I  L PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           FSATM  E+++++  FL  P R+EV   ++T+E I    V   A     + S+K  LL+ 
Sbjct: 184 FSATMAPEIERITNTFLSAPARVEVARQATTSENITQGVVLFKASRRDREGSEKRKLLRH 243

Query: 238 LL-QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+ Q  +   N IIFCN+K +V  +  SL+K G+    IHG++DQ  R K L  F+EG++
Sbjct: 244 LIDQEGEKCTNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFREGSL 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VASD+AARGLD+P V HVFNFDVP+ AE+Y+HRIGRTGRAGR G A  +   +D K+
Sbjct: 304 RFLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGSAMMICVPKDEKN 363

Query: 357 IDAIEKLIEKKVDWLNGDL 375
           ++ IE+L++ ++  +   L
Sbjct: 364 LEDIERLVQNEIPRIENPL 382


>gi|149204620|ref|ZP_01881585.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. TM1035]
 gi|149141879|gb|EDM29929.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. TM1035]
          Length = 506

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/372 (55%), Positives = 269/372 (72%), Gaps = 6/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L+PKV+ A+ +AGY  PTPIQ + IP  L   DV GIAQTGTGKTASF LPML++
Sbjct: 4   FSDLNLNPKVLKAIEEAGYETPTPIQAEAIPHALVGRDVLGIAQTGTGKTASFTLPMLSL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+K +++G
Sbjct: 64  LSRGRARARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQDKLIDKG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY-----SKKCALLQQ 237
           FSATM  E+++++  FL NP R+EV   ++ +ETIE   V           S+K  LL+ 
Sbjct: 184 FSATMAPEIERITNTFLSNPARVEVARQATASETIEQGVVMFKPSRRENADSEKRKLLRA 243

Query: 238 LLQSQDTM-KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+  +     N IIFCN+K +V  +  SL K G+    IHG++DQ  R + L  F+ GT+
Sbjct: 244 LIDREGAACSNAIIFCNRKIDVDVVAKSLIKYGYDAAPIHGDLDQSQRTRTLDGFRAGTL 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++ASD+AARGLD+P V HVFNFDVP+ AE+Y+HRIGRTGRAGR GKA  +    D K+
Sbjct: 304 RFLIASDVAARGLDVPAVSHVFNFDVPSHAEDYVHRIGRTGRAGRSGKALMICNPRDEKN 363

Query: 357 IDAIEKLIEKKV 368
           +  +E LI+K++
Sbjct: 364 LAGVEALIQKEI 375


>gi|163732038|ref|ZP_02139484.1| ATP-dependent RNA helicase, putative [Roseobacter litoralis Och
           149]
 gi|161394336|gb|EDQ18659.1| ATP-dependent RNA helicase, putative [Roseobacter litoralis Och
           149]
          Length = 504

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/413 (50%), Positives = 289/413 (69%), Gaps = 10/413 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++L L+PKV+ A+ +AGY  PTPIQ   IP  L   DV GIAQTGTGKTASF LPM+
Sbjct: 22  IKFSELNLNPKVLKAIDEAGYETPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMI 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+K ++
Sbjct: 82  TLLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDKLID 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQT
Sbjct: 142 KGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALL 235
           L FSATM  E+++++  FL  P+R+EV   ++ +ETIE   +   A     + ++K  LL
Sbjct: 202 LFFSATMAPEIERITNTFLSAPERVEVARQATASETIEQGVLKFKASRKDREGTEKRKLL 261

Query: 236 QQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + L+ ++ +   N IIFCN+K +V  +  SL+K  +    IHG++DQ  R + L  F++G
Sbjct: 262 RALIDAEGEKCTNAIIFCNRKTDVDIVAKSLKKYNYDAAPIHGDLDQSQRTRTLDGFRDG 321

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           +++ ++ASD+AARGLD+P V HVFNFDVP  AE+Y+HRIGRTGRAGR GKA  +    D 
Sbjct: 322 SLKFLIASDVAARGLDVPAVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAIMICVPRDE 381

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ----HNHARKNNPIPQKS 403
           ++++ IE+L+++++  L+  L +   P EK   ++        R     P+KS
Sbjct: 382 RNLEDIERLVQREIPRLDNPLGTPAEPEEKTTASEPAVTEKPKRTRTRAPRKS 434


>gi|294676409|ref|YP_003577024.1| ATP-dependent RNA helicase SrmB [Rhodobacter capsulatus SB 1003]
 gi|294475229|gb|ADE84617.1| ATP-dependent RNA helicase SrmB [Rhodobacter capsulatus SB 1003]
          Length = 548

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/372 (54%), Positives = 268/372 (72%), Gaps = 6/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L P V+ A+ DAGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T+
Sbjct: 4   FTDLKLDPAVLRAIADAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMVTM 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  GRAR RMPR+L+L PTRELAAQVA+NF+ Y K   LT ALLIGG+ F  Q+K ++RG
Sbjct: 64  LSSGRARARMPRSLVLCPTRELAAQVAENFDTYAKYTRLTKALLIGGVSFGEQDKLIDRG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I  L PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFQLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-----LLQQ 237
           FSATM  E+++++  FL  P RIEV   ++T+ETI    +        + A     LL+ 
Sbjct: 184 FSATMAPEIERITNTFLHAPARIEVARQATTSETITQKLIQITPPRRDQSAKAKRELLRA 243

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +++S+ +   N IIFCN+K +V  +  SL+  GF+   IHG++DQ  R K L  F++G++
Sbjct: 244 IIKSEGEACTNAIIFCNRKTDVDIVAKSLKTHGFNAAPIHGDLDQSLRTKTLDAFRDGSL 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           QL++ASD+AARGLDIP V HVFN+D+P+ AE+Y+HRIGRTGRAGR G A+++    D K+
Sbjct: 304 QLLIASDVAARGLDIPAVSHVFNYDLPSHAEDYVHRIGRTGRAGRLGTAYSIGTPADAKY 363

Query: 357 IDAIEKLIEKKV 368
           + AIE L+++++
Sbjct: 364 LAAIEALVKQEI 375


>gi|197105174|ref|YP_002130551.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
 gi|196478594|gb|ACG78122.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
          Length = 513

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/380 (53%), Positives = 273/380 (71%), Gaps = 4/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+DLGLSP  + AV + GY   TPIQ + IP+ LQ  DV GIAQTGTGKTA+F LPM+ 
Sbjct: 3   EFSDLGLSPATLKAVAETGYTTATPIQAEAIPMALQGRDVLGIAQTGTGKTAAFTLPMID 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L  GRA+ RMPR L++ PTRELA QV+ +FEKY     LT ALLIGG+ F+ Q +KL+R
Sbjct: 63  RLAAGRAKARMPRALVIAPTRELADQVSASFEKYAMGQKLTWALLIGGVSFKDQEQKLDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLLM  ++I+V+DEADRMLDMGFIP ++ I  L P  +QTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLMTGVQIMVVDEADRMLDMGFIPDLERIFKLTPAKKQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV--ATYAQYSKKCALLQQLL 239
            FSATM  E+ ++++ FL +P RIE + P++TAETI    V   +    +K+ AL + + 
Sbjct: 183 FFSATMPPEITRLTKQFLNDPVRIEASRPATTAETITQYLVRIPSADPKAKRTALRELIG 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +++  + NGI+FCN+K  V  +  SL+K GF   AIHG++DQ +RM+ L +F+ G ++L+
Sbjct: 243 RAE--INNGIVFCNRKTEVDIVAKSLKKHGFDAAAIHGDLDQATRMRTLESFRNGELKLL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            ASD+AARGLDIP V HVFNFDVP+ A++Y+HRIGRTGRAGR G+AF +V   D K++D 
Sbjct: 301 CASDVAARGLDIPAVSHVFNFDVPHHADDYVHRIGRTGRAGRTGEAFMIVTPADSKNLDK 360

Query: 360 IEKLIEKKVDWLNGDLSSLN 379
           + KLI K  + ++ DL   N
Sbjct: 361 VLKLIGKTPEEVSLDLDWAN 380


>gi|99081650|ref|YP_613804.1| DEAD/DEAH box helicase-like [Ruegeria sp. TM1040]
 gi|99037930|gb|ABF64542.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TM1040]
          Length = 493

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/446 (50%), Positives = 303/446 (67%), Gaps = 20/446 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T 
Sbjct: 4   FTDLNLNPKVLKAIEEAGYESPTPIQAGAIPAALEGRDVLGIAQTGTGKTASFTLPMITR 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+  ++RG
Sbjct: 64  LARGRARARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDAAIDRG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKLL+  IEI+V+DEADRMLDMGFIP I+ I SL PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           FSATM  E+++++  FL  P+R+E+   ++T+E IE   V   A     + S+K  +L++
Sbjct: 184 FSATMAPEIERITNTFLSGPERVEIARQATTSENIEQAVVMFKASRKDREGSEKRRVLRE 243

Query: 238 LL-QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+ Q  + ++N IIFCN+K +V  +  SL+K G+    IHG++DQ  R K L  F++GT+
Sbjct: 244 LINQEGEAVQNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLDGFRDGTL 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VASD+AARGLD+P V HVFNFDVP  AE+Y+HRIGRTGRAGR GKA TL +  D K 
Sbjct: 304 KILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAITLCSPRDEKA 363

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +DA+E L++K++  L    + + P   K   A  +    + P P + +    R K  S++
Sbjct: 364 LDAVEGLVQKEITRLE---NPVKPTPRK--TATKDEDAGDKPKPARRS----RSKAASAK 414

Query: 417 KSHIPLKESE-----KISKLQQDIQE 437
               P  E+      ++   QQ  QE
Sbjct: 415 TDATPTPEAANDAAPQVEAPQQQPQE 440


>gi|94497443|ref|ZP_01304013.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
 gi|94423074|gb|EAT08105.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
          Length = 443

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/455 (49%), Positives = 296/455 (65%), Gaps = 20/455 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS +++ AV ++GY  PTPIQ + IP VL   D+ GIAQTGTGKTASFVLPM+
Sbjct: 1   MTFADLGLSDELLRAVTESGYDTPTPIQAQAIPSVLMMKDIIGIAQTGTGKTASFVLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  GRAR  MPR+LILEPTRELAAQVA+NFEKYGK + L++ALLIGG+    Q K LE
Sbjct: 61  DILAHGRARALMPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLIGGVQMGDQVKALE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR++D F RGK+L+N   +LVIDEADRMLDMGFIP I++I + +P  RQT
Sbjct: 121 KGVDVLIATPGRLMDLFERGKILLNGCNMLVIDEADRMLDMGFIPDIEHICTKLPAQRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++ FL NPK IEV  P++ +  I    V   A+  KK   L+ LL 
Sbjct: 181 LLFSATMPPVIKKLADRFLSNPKSIEVARPATASTNIAQHLVKVDAR--KKREALRALLD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +++ +IFCN+K  V  L  SL++ G+    IHG+IDQ SR+  L  F++GT+ ++V
Sbjct: 239 GQ-QVQSAVIFCNRKTTVRELNKSLQRDGYKSGEIHGDIDQASRIAELERFRDGTVNILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDI  V HVFNFD P   ++Y+HRIGRTGRAG  G A+T V K+D + ID I
Sbjct: 298 ASDVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTFVTKDDAEAIDNI 357

Query: 361 EKLIEKKVDWLN--GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           +KLI  K+D+ +  G+ +   P  E              P P ++   +R  +    Q+ 
Sbjct: 358 QKLIGTKIDYADFAGETTDAEPKAE------------GKPAPTRTRRAERLDEQRKDQRR 405

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPAFM 453
               +     S  +Q     D    G+ G +P F+
Sbjct: 406 E---ERKAPASGPRQSKMPEDGPDEGWNGPVPEFL 437


>gi|288958478|ref|YP_003448819.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
 gi|288910786|dbj|BAI72275.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
          Length = 521

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/374 (54%), Positives = 273/374 (72%), Gaps = 3/374 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL P V+ A+ D GY +PTPIQ + IP VLQR DV G AQTGTGKTASF LPM+
Sbjct: 1   MLFSELGLGPDVLRAIEDKGYTQPTPIQEQAIPCVLQRRDVLGCAQTGTGKTASFTLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +IL  GRAR RMPR+LILEPTRELAAQVA++FE YGK + L++ALLIGG  F  Q KKL+
Sbjct: 61  SILASGRARARMPRSLILEPTRELAAQVAESFEVYGKYHKLSMALLIGGETFTEQVKKLD 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR++D F RG +++N+I++ VIDEADRMLDMGFIP I+ I S +P  RQT
Sbjct: 121 RGVDVLIATPGRLIDLFERGNIMLNDIKVFVIDEADRMLDMGFIPDIERIVSKLPKNRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++++++ FL +P  I V  P+S AET+       +    ++   L+ LLQ
Sbjct: 181 LFFSATMPPEIRRLADAFLTDPMEITVAPPASPAETVTQALALVHEMDKRRA--LRHLLQ 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++D +KN  IFCN+K+++  L  SLE+ GF+V A+HG++ Q  R + L  FK+G I L+V
Sbjct: 239 TED-VKNAFIFCNRKRDIAVLQKSLERHGFNVGALHGDMVQSKRTETLERFKQGEITLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SD+AARG+D+  + HVFNFDVP   ++Y+HRIGRTGRAG+ G+AF L   +D K + AI
Sbjct: 298 CSDVAARGIDVQGLSHVFNFDVPLTPDDYVHRIGRTGRAGKQGRAFMLATPDDTKLVGAI 357

Query: 361 EKLIEKKVDWLNGD 374
            +LI++++  +  D
Sbjct: 358 TRLIKREIPMIAID 371


>gi|254438460|ref|ZP_05051954.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
           307]
 gi|198253906|gb|EDY78220.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
           307]
          Length = 530

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/376 (52%), Positives = 272/376 (72%), Gaps = 6/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L  KV+ AV + GY  PTPIQ   IP  L+  DV GIAQTGTGKTA F LPM+T+
Sbjct: 4   FSDLKLDAKVLKAVEETGYTTPTPIQAGAIPPALEGRDVLGIAQTGTGKTAGFTLPMITM 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++GRAR RMPR+L+L PTRELAAQVA+NF+ Y K   LT ALLIGG+ F+ Q+  ++RG
Sbjct: 64  LKRGRARARMPRSLVLAPTRELAAQVAENFDTYAKYTKLTKALLIGGVSFKEQDNLIDRG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKL++++++I+V+DEADRMLDMGFIP I+ I  L PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-----ATYAQYSKKCALLQQ 237
           FSATM  E+++++  FL NP +IEV   ++T+ETI    +        ++  +K  LL+ 
Sbjct: 184 FSATMAPEIERITNTFLSNPAKIEVARAATTSETITQGVIMFKGSKKTSEAIEKQKLLRD 243

Query: 238 LLQSQDT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++ S+    +NGIIFCN+K +V  +  S+ K G     IHG+++Q  RM+ L+ F++GT+
Sbjct: 244 IIASEGANCRNGIIFCNRKIDVDAVAKSMTKAGLDASPIHGDLEQSHRMRTLAKFRDGTL 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VASD+AARGLDIP+V HVFN+DVP+ AE+Y+HRIGRTGRAG+ G    +    D K+
Sbjct: 304 RFLVASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGKTGATIMICTPRDQKN 363

Query: 357 IDAIEKLIEKKVDWLN 372
           +D IE+L+E  V  ++
Sbjct: 364 LDDIERLVEMAVPRMD 379


>gi|260426960|ref|ZP_05780939.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
 gi|260421452|gb|EEX14703.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
          Length = 473

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/466 (47%), Positives = 307/466 (65%), Gaps = 21/466 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L+PKV+ A+ +AGY  PTPIQ   IP  L   DV GIAQTGTGKTASF LPM+T 
Sbjct: 4   FSDLNLNPKVLKAIEEAGYETPTPIQAGAIPHALAGKDVLGIAQTGTGKTASFTLPMITA 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K   LT ALLIGG+ F+ Q + +++G
Sbjct: 64  LARGRARARMPRSLVLCPTRELAAQVAENFDTYAKYVKLTKALLIGGVSFKEQEQLIDKG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDHF RGKL++ +++++V+DEADRMLDMGFIP I+ I SL PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237
           FSATM  E+++++  FL NP+R+EV   ++ +ETIE   V         + ++K  +L+Q
Sbjct: 184 FSATMAPEIERITNTFLSNPERVEVARQATASETIEQGAVFFKGSRRDREATEKRDVLRQ 243

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++  + +   N I+FCN+K +V  +  SL+K G++   IHG++DQ  R + L  F++G+I
Sbjct: 244 IIDREGEKCTNAIVFCNRKVDVDIVAKSLKKHGYNAEPIHGDLDQSQRTRTLDGFRDGSI 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++ASD+AARGLD+P V HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V+  D K+
Sbjct: 304 RLLIASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAFTIVSPRDEKN 363

Query: 357 IDAIEKLIEK---KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            + +EKL++K   +V+  N    +  P  E  D A  +   K      KST    R K  
Sbjct: 364 FEDVEKLLQKEIPRVELPNMSAPAAVPTPEPEDTASEDQGEK------KSTRVRSRSKKP 417

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADS------LGFRGNMPAFM 453
             ++S     E     +       ND +       +G   +MP F+
Sbjct: 418 EREESKPARAEKPSAPRRNDRGDRNDRNDRSDKGVVGMGDHMPEFI 463


>gi|83594050|ref|YP_427802.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
 gi|83576964|gb|ABC23515.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
          Length = 799

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/393 (52%), Positives = 271/393 (68%), Gaps = 11/393 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLSP+ + A+ + GY  PTPIQ++ IP V    DV GIAQTGTGKTASF LPM+
Sbjct: 1   MTFADLGLSPETLRAIEEVGYTTPTPIQVQAIPYVQMGRDVLGIAQTGTGKTASFTLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  G+A+ RMPR+LIL PTRELA QV++NF  YGK   L++ALLIGG     Q K L+
Sbjct: 61  DILASGKAKARMPRSLILAPTRELATQVSENFTLYGKYQKLSMALLIGGESMNEQQKVLD 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR++D F RG +L+ ++++LVIDEADRMLDMGFIP ++ I +L+P  RQT
Sbjct: 121 RGVDVLIATPGRLIDLFERGSILLRDVKVLVIDEADRMLDMGFIPDVERIVALLPKIRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++++++ FL NPK + +      AET+E   +   A  S+K   L+QLL+
Sbjct: 181 LFFSATMDKEIRRLADAFLMNPKEVRIEPTQKVAETVEQALIMVKA--SEKREALRQLLR 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++T+ N  IFCN+K++V  L  SL   GF + A+HG++ Q  R + L  FK   +QLMV
Sbjct: 239 -RETVTNAFIFCNRKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKRAEVQLMV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SD+AARG+D+ +V HVFNFDVP   E+YIHRIGRTGRAGR G+A+TL   ED K++ AI
Sbjct: 298 CSDVAARGIDVTEVSHVFNFDVPTHPEDYIHRIGRTGRAGRLGRAYTLATPEDAKYLRAI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           E L+ K +          +P LE  D+A  + A
Sbjct: 358 ENLLGKTI--------PPDPQLELSDVAVEDVA 382


>gi|260752364|ref|YP_003225257.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258551727|gb|ACV74673.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 506

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/441 (49%), Positives = 291/441 (65%), Gaps = 11/441 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS +++ AV + GY +PTP+Q   IP VL   D+  +AQTGTGKTASFVLPM+
Sbjct: 15  MSFADLGLSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMI 74

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  GR R RMPR+LILEPTRELAAQVA+NFEKYGK + L+++LLIGG+P   Q   LE
Sbjct: 75  DILAHGRCRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALE 134

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR+LD F RGK+L+++ E+LVIDEADRMLDMGFIP I+ I + +P +RQT
Sbjct: 135 KGVDVLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQT 194

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++ FL NPK+IE++ P++    I+   +    + SKK  L   L  
Sbjct: 195 LLFSATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPR-SKKKKLCDMLRA 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIFCN+K  V  L  +LE+QGFSV  IHG++ Q  R   L  FK G I ++V
Sbjct: 254 EKD--HTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLV 311

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLD+  + HVFNFDVP   ++YIHRIGRTGR G  G+A T V   D + I AI
Sbjct: 312 ASDIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAITAI 371

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EKL+  ++  L     +  P   +  ++     ++  P+ +KS     RK   + +K+  
Sbjct: 372 EKLMGVEIPRLGNRKKNAYPSKSEETVS----PKQAKPVQEKSAASSPRK---APRKTET 424

Query: 421 PLKESE-KISKLQQDIQENDA 440
           P K  E ++  ++ D  +N A
Sbjct: 425 PKKLPEDRLDSVESDFPKNQA 445


>gi|241762057|ref|ZP_04760141.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373523|gb|EER63110.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 506

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/441 (49%), Positives = 291/441 (65%), Gaps = 11/441 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS +++ AV + GY +PTP+Q   IP VL   D+  +AQTGTGKTASFVLPM+
Sbjct: 15  MSFADLGLSKELLQAVAELGYEEPTPVQATAIPSVLMMRDLIAVAQTGTGKTASFVLPMI 74

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  GR R RMPR+LILEPTRELAAQVA+NFEKYGK + L+++LLIGG+P   Q   LE
Sbjct: 75  DILAHGRCRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALE 134

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR+LD F RGK+L+++ E+LVIDEADRMLDMGFIP I+ I + +P +RQT
Sbjct: 135 KGVDVLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQT 194

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++ FL NPK+IE++ P++    I+   +    + SKK  L   L  
Sbjct: 195 LLFSATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPR-SKKKKLCDMLRA 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIFCN+K  V  L  +LE+QGFSV  IHG++ Q  R   L  FK G I ++V
Sbjct: 254 EKD--HTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLV 311

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLD+  + HVFNFDVP   ++YIHRIGRTGR G  G+A T V   D + I AI
Sbjct: 312 ASDIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAIAAI 371

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EKL+  ++  L     + +P   +  ++     ++  P  +KS     RK   + +K+  
Sbjct: 372 EKLMGVEIPRLGNRKKNAHPSKSEEAVS----PKQAKPAQEKSAAPSPRK---APRKAET 424

Query: 421 PLKESE-KISKLQQDIQENDA 440
           P K  E ++  ++ D  +N A
Sbjct: 425 PKKSPEDRLDSVESDFPKNQA 445


>gi|85708956|ref|ZP_01040022.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
 gi|85690490|gb|EAQ30493.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
          Length = 497

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/368 (56%), Positives = 264/368 (71%), Gaps = 3/368 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLSP+++ AV DAGY +PT IQ + IP VL   D+ GIAQTGTGKTASFVLPM+
Sbjct: 36  MTFADLGLSPELLKAVEDAGYTEPTAIQAEAIPAVLMMKDLIGIAQTGTGKTASFVLPMI 95

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ++  GR R  MPR+LILEPTRELAAQVA+NFEKYG N++L +ALLIGG+    Q K L+
Sbjct: 96  DVMAAGRRRALMPRSLILEPTRELAAQVAENFEKYGANHDLKMALLIGGVQMGDQLKTLD 155

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR++D F RGK+L+N  E+LVIDEADRMLDMGFIP I+ I   +P TRQT
Sbjct: 156 EGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIEFICDKLPETRQT 215

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++K+++ FL NPKRIE    ++T + I    V   A+  +    L+ LL 
Sbjct: 216 MLFSATMPAPIEKLAKKFLSNPKRIETTRAATTNKDITAFKVPVKARQKRDT--LEWLL- 272

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D ++  IIF N+K  V  L   L++QGF+   IHG++DQ SR+K L  FK G + ++V
Sbjct: 273 ANDQVETAIIFANRKTTVRELNKHLQRQGFASGEIHGDMDQSSRLKELDRFKSGDVNILV 332

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDI  V HVFNFD P   ++Y+HRIGRTGRAG  G+AFTLVA ED + I  +
Sbjct: 333 ASDVAARGLDIKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFTLVADEDAEAIANV 392

Query: 361 EKLIEKKV 368
           EKL   K+
Sbjct: 393 EKLTGAKI 400


>gi|85374360|ref|YP_458422.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
 gi|84787443|gb|ABC63625.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
          Length = 455

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/459 (48%), Positives = 294/459 (64%), Gaps = 16/459 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLSP+++ +V  AGY +PTPIQ + IP VL   D+ GIAQTGTGKTASFVLPM+
Sbjct: 1   MKFADLGLSPELLKSVEKAGYTEPTPIQEQAIPPVLMMKDIIGIAQTGTGKTASFVLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I+  GR R  MPR+LILEPTRELAAQVA+NFEKYG+N++L +ALLIGG+    Q K L 
Sbjct: 61  DIMAAGRRRALMPRSLILEPTRELAAQVAENFEKYGENHDLKMALLIGGVQMGDQIKALN 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR++D F RGK+L+N  E+LVIDEADRMLDMGFIP I+ I S +P  RQT
Sbjct: 121 EGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIEFICSKLPEQRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++K+S+ F+ NPKRIE    ++T + I   F     Q  K+  L  + L 
Sbjct: 181 MLFSATMPPPIEKLSKQFMSNPKRIETTRAATTNKDI-TAFRVNVGQRQKRETL--EWLL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D ++  I+F N+K  V  L  SL+++GF    IHG+IDQ  R   L  FK+G I ++V
Sbjct: 238 ENDHVETAIVFANRKTTVRELNKSLQRRGFKSGEIHGDIDQNQRNAELQRFKDGEINILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDI  V HVFNFD P   ++Y+HRIGRTGRAG  G+AFT VA ED + ID +
Sbjct: 298 ASDVAARGLDIKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFTFVAPEDAEAIDNV 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK---STGFDRRKKNYSSQK 417
           EKL E K+     D         ++++   +   +  P P++   S   D  K     +K
Sbjct: 358 EKLTENKIKVFGKDDV-------RVELKDPSKGDEQKPKPKRERQSREEDEEKPARKPRK 410

Query: 418 SHIPLKESEKISKLQQDIQENDADSL---GFRGNMPAFM 453
                +E  K S  ++  +E+  D++    + G  P F+
Sbjct: 411 RRDESEERPKRSTGRKPPREDRDDAVPAGEWNGPQPGFL 449


>gi|144901078|emb|CAM77942.1| ATP-dependent RNA helicase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 570

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/364 (56%), Positives = 270/364 (74%), Gaps = 3/364 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLSP+++ AV ++GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LPM+
Sbjct: 8   MSFADLGLSPELLQAVEESGYTTPTPIQQQAIPVVLMGRDVLGCAQTGTGKTASFTLPMI 67

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  GRA+ RMPR+LIL PTRELAAQVA+NF+KYGK + L  AL+IGG     Q   L+
Sbjct: 68  EILAAGRAKARMPRSLILAPTRELAAQVAENFDKYGKYHKLNKALIIGGESMSDQIAILD 127

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LD F+RG++L+N++++LVIDEADRMLDMGFIP +Q I S++P  RQT
Sbjct: 128 RGVDVLIATPGRLLDMFDRGRILLNDVKVLVIDEADRMLDMGFIPDVQRIVSMLPKMRQT 187

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+  E++K+++ FL NPK I V+  SSTA T+E  F+A      K+   L+ +++
Sbjct: 188 LFFSATLGPEIRKLADEFLMNPKEISVSAQSSTAVTVEQ-FLAVVDHIDKR-ETLRHIIR 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++ +KN  IFCN+K++V  L  SL+K GF V  +HG++ Q +R++ L+ FK G  +L+V
Sbjct: 246 IEN-LKNAFIFCNRKRDVDILFKSLKKHGFDVVQMHGDMSQPARLESLAKFKSGEARLLV 304

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SD+ ARG+DI  V HVFNFDVP  AE+Y+HRIGRTGRAG  GKAFT+ + ED + + AI
Sbjct: 305 CSDVVARGIDIKAVSHVFNFDVPIHAEDYVHRIGRTGRAGETGKAFTIASPEDGRFVAAI 364

Query: 361 EKLI 364
           E LI
Sbjct: 365 EGLI 368


>gi|307294408|ref|ZP_07574252.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306880559|gb|EFN11776.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 454

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/372 (55%), Positives = 271/372 (72%), Gaps = 3/372 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS +++ AV +AGY  PTPIQ + IP VL   D+ GIAQTGTGKTASFVLPM+
Sbjct: 1   MTFADLGLSDELLKAVTEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  GRAR  MPR+LILEPTRELAAQVA+NFEKYGK + L +ALLIGG+    Q K LE
Sbjct: 61  DILAHGRARALMPRSLILEPTRELAAQVAENFEKYGKYHKLNMALLIGGVQMGDQLKALE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR++D F RGK+L+N   +LVIDEADRMLDMGFIP I+ I + +P  RQT
Sbjct: 121 KGVDVLIATPGRLMDLFQRGKILLNGCNMLVIDEADRMLDMGFIPDIEEICTKLPAQRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++ FL NPK IEV  P++ +  I    V   ++  KK   L+ +L+
Sbjct: 181 LLFSATMPPVIKKLADRFLSNPKSIEVARPATASTNITQRLVKVDSR--KKREALRAMLE 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++D + + +IFCN+K  V +L  SL++ GF    IHG+IDQ +R+  L  F+ G++ ++V
Sbjct: 239 AEDVL-SAVIFCNRKTTVRDLNKSLQRHGFKSGEIHGDIDQSARIAELERFRAGSVNILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDI  V HVFNFD P   ++Y+HRIGRTGRAG  G A+T V  +D + ID I
Sbjct: 298 ASDVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTFVTADDAEAIDNI 357

Query: 361 EKLIEKKVDWLN 372
           +KLI+++++ ++
Sbjct: 358 QKLIKQQIETID 369


>gi|283856424|ref|YP_162949.2| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|283775425|gb|AAV89838.2| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 506

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/441 (49%), Positives = 290/441 (65%), Gaps = 11/441 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS +++ AV + GY +PTP+Q   IP VL   D+  +AQTGTGKTASFVLPM+
Sbjct: 15  MSFADLGLSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMI 74

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  GR R RMPR+LILEPTRELAAQVA+NFEKYGK + L+++LLIGG+P   Q   LE
Sbjct: 75  DILAHGRCRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALE 134

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR+LD F RGK+L+++ E+LVIDEADRMLDMGFIP I+ I + +P +RQT
Sbjct: 135 KGVDVLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQT 194

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++ FL NPK+IE++ P++    I+   +    + SKK  L   L  
Sbjct: 195 LLFSATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPR-SKKKKLCDMLRA 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIFCN+K  V  L  +LE+QGFSV  IHG++ Q  R   L  FK G I ++V
Sbjct: 254 EKD--HTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLV 311

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLD+  + HVFNFDVP   ++YIHRIGRTGR G  G+A T V   D + I AI
Sbjct: 312 ASDIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAITAI 371

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EKL+  ++  L     +  P   +  ++     ++  P  +KS     RK   + +K+  
Sbjct: 372 EKLMGVEIPRLGNRKKNTYPSKSEETVS----PKQAKPAQEKSATPSPRK---APRKTET 424

Query: 421 PLKESE-KISKLQQDIQENDA 440
           P K  E ++  ++ D  +N A
Sbjct: 425 PKKLPEDRLDSVESDFPKNQA 445


>gi|103486540|ref|YP_616101.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
 gi|98976617|gb|ABF52768.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
          Length = 458

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/459 (48%), Positives = 295/459 (64%), Gaps = 13/459 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS +++ A+ ++GY +PT IQ   IP VL   D+ GIAQTGTGKTASFVLPM+
Sbjct: 1   MKFADLGLSDELLRAIDESGYSEPTAIQAGAIPSVLMMRDMIGIAQTGTGKTASFVLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  GRAR  MPR+LILEPTRELAAQVA+NFEKYGK + L++ALLIGG+    Q K LE
Sbjct: 61  DILAHGRARALMPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLIGGVQMGDQIKALE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR++D F RGK+L+    +LVIDEADRMLDMGFIP I+NI + +P  RQT
Sbjct: 121 KGVDVLIATPGRLMDLFERGKILLTGCNLLVIDEADRMLDMGFIPDIENICTKLPANRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++ FL NPK IEV  P+S  E IE   V T  +  +    L+ L++
Sbjct: 181 LLFSATMPPPIKKLADKFLSNPKTIEVARPASRNENIEQFVVKTSERGKRDT--LRGLIE 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++D +   I+FCN+K  V  L  SL++ G+    IHG++DQ SR+  L  FK GTI ++V
Sbjct: 239 AED-LSTAIVFCNRKTTVRELAKSLQRSGYRAGEIHGDMDQSSRIAELDRFKAGTINILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLD+  V HVFNFD P   ++Y+HRIGRTGRAG  G+AFTLV   D + ID I
Sbjct: 298 ASDVAARGLDVKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAQGRAFTLVTPSDDEAIDNI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE------KIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +KL    +  ++G  ++   P +      +    +   AR       ++   D   K   
Sbjct: 358 QKLTGYNIP-VHGTATADAAPAKDEPREEREPRRESRPARGGR---GRAKPADPDAKRAD 413

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFM 453
            +++  P K+           Q++D    G+ G MP F+
Sbjct: 414 DKRNEAPRKKDAGRKPPPAARQDDDGSDDGWNGPMPGFL 452


>gi|167646708|ref|YP_001684371.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter sp.
           K31]
 gi|167349138|gb|ABZ71873.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
          Length = 678

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/373 (52%), Positives = 258/373 (69%), Gaps = 5/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++LGLSP  + AV D GY   TPIQ   IP+ L   DV GIAQTGTGKTA+F LP++ 
Sbjct: 3   EFSELGLSPTTLQAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLPLID 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L  GRA+ RMPR L++ PTRELA QVA +FEKY K   L+ ALLIGG+ F  Q KKL+R
Sbjct: 63  KLMNGRAKARMPRALVIAPTRELADQVASSFEKYAKGTKLSWALLIGGVSFGDQEKKLDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLLM  ++ LV+DEADRMLDMGFIP I+ I  + P  +QTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKKQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+ ++++ FL++P RIE + P++T E I    V   +   K   L  + L  
Sbjct: 183 FFSATMPPEITRLTKQFLKDPVRIEASRPATTNENITQLMVKVPSSDPKAKRLALRALIE 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  ++ GI+FCN+K  V  +  SL+  GF   AIHG++DQ  R K L+ F++G+++++VA
Sbjct: 243 KAQIETGIVFCNRKTEVDVVAKSLKSHGFDAAAIHGDLDQSQRTKTLAAFRDGSLKILVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIP V HVFN+DVP+ A++Y+HRIGRTGRAGR G  + LV   D K  D + 
Sbjct: 303 SDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRSGVTYMLVTPADDKGFDKVV 362

Query: 362 KLI-----EKKVD 369
           KLI     E+K+D
Sbjct: 363 KLIGSTPTEEKLD 375


>gi|302383278|ref|YP_003819101.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193906|gb|ADL01478.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 521

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/379 (52%), Positives = 264/379 (69%), Gaps = 9/379 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ LGLSP  + AV+D GY   TPIQ + IP+ L   DV GIAQTGTGKTA+F LP++ 
Sbjct: 3   EFSALGLSPTTLQAVIDTGYTTATPIQAQAIPVALAGRDVLGIAQTGTGKTAAFTLPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L KGRAR RMPR L+L PTRELA QVA +FEKY K   L+  LLIGG+    Q   L +
Sbjct: 63  RLSKGRARARMPRALVLAPTRELADQVAMSFEKYAKGTKLSWVLLIGGVSMGDQVAALNK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LD F RGK+++N +E++V+DEADRMLDMGFIP I+ I  L P  RQTL
Sbjct: 123 GVDVLIATPGRLLDLFERGKMMLNGVELMVVDEADRMLDMGFIPDIERIFKLTPPKRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCALLQQLLQ 240
            FSATM  E+ ++++ FL++P RIE + P+ TAETI    V   +   K K A L++L+ 
Sbjct: 183 FFSATMPPEITRLTQAFLKDPTRIEASRPAMTAETITQYLVRIPSSDPKAKRAALRELMA 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D ++NGI+FCN+K  V  +  SL++ GF    IHG++DQ  R K L++F+ G ++++V
Sbjct: 243 RAD-VRNGIVFCNRKSEVDVVAKSLKQHGFDAAPIHGDLDQSLRTKTLADFRSGALKILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFN+DV + A++Y+HRIGRTGRAG+ G+AF +V   D K +D +
Sbjct: 302 ASDVAARGLDIPDVSHVFNYDVSHHADDYVHRIGRTGRAGKLGQAFMIVTPADDKSLDKV 361

Query: 361 EKLIEKK-------VDWLN 372
            KLI+         +DW N
Sbjct: 362 MKLIKMSPEELVLDLDWSN 380


>gi|84516715|ref|ZP_01004073.1| ATP-dependent RNA helicase RhlE [Loktanella vestfoldensis SKA53]
 gi|84509183|gb|EAQ05642.1| ATP-dependent RNA helicase RhlE [Loktanella vestfoldensis SKA53]
          Length = 498

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/388 (51%), Positives = 272/388 (70%), Gaps = 6/388 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D+ L PKV+ AV + GY  PTPIQ   IP  L+  DV GIAQTGTGKTA+F LPM+T+
Sbjct: 4   FSDMNLDPKVLKAVAETGYDTPTPIQDGAIPPALEGRDVLGIAQTGTGKTAAFTLPMITL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K   LT ALLIGG  F+ Q+K +++G
Sbjct: 64  LGRGRARARMPRSLVLAPTRELAAQVAENFDTYAKYTKLTKALLIGGTSFKDQDKLIDKG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDH  RGKL++ +++I+V+DEADRMLDMGFIP I+ I    PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHLERGKLILTDVKIMVVDEADRMLDMGFIPDIEEIFKRTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-----ATYAQYSKKCALLQQ 237
           FSATM  E+++++  FL NP ++EV   ++T   I+   V     A   + ++K ALL+ 
Sbjct: 184 FSATMAPEIERITNTFLSNPAKVEVARAATTNVNIKQGVVMFRASAKLREATEKRALLRA 243

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+ ++ D   N IIFCN+K +V  +  SL K G+    IHG+++Q  R + L +F++  +
Sbjct: 244 LINAEGDACSNAIIFCNRKADVDVVAKSLNKYGYDAAPIHGDLEQSHRTRTLESFRDNKL 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VASD+AARGLDIP V HVFNFDVP+ AE+Y+HRIGRTGRAGR G A  + +  D K+
Sbjct: 304 RFLVASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRIGRTGRAGRSGVAIMICSGRDEKN 363

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
           ++ +E+L++  +  L+  L    P  E+
Sbjct: 364 LEDVERLVQNPIPRLDNPLGVTAPVAEE 391


>gi|296282684|ref|ZP_06860682.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354]
          Length = 472

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/368 (56%), Positives = 262/368 (71%), Gaps = 3/368 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS K++ AV  AGY +PTPIQ + IP VL   D+ GIAQTGTGKTASFVLPM+
Sbjct: 1   MKFADLGLSDKLLQAVEAAGYTEPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  GR R  MPR+LIL PTRELAAQVA+NFEKYGK ++L +ALLIGG+    Q K L 
Sbjct: 61  DILASGRRRALMPRSLILAPTRELAAQVAENFEKYGKQHDLQLALLIGGVQMGDQVKALN 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR++D F RGK+L+N  E+LVIDEADRMLDMGFIP I+ I S +P  RQT
Sbjct: 121 EGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIETICSKLPEPRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++ FL NPKRIEV+  +ST E I    +   A+  ++   L+ LL 
Sbjct: 181 LLFSATMPPPIEKLAQKFLTNPKRIEVSRAASTNENITAFKIPVKAREKRET--LRWLL- 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D ++  IIF N+K  V  +  SL+  GF+   IHG++DQ SR+  L+ FK G + ++V
Sbjct: 238 ANDHVETAIIFANRKTTVREINKSLQSHGFASGEIHGDMDQSSRIAELNRFKAGEVNILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDI  V HVFNFD P   ++Y+HRIGRTGRAG  G+AFT V  +D + I  +
Sbjct: 298 ASDVAARGLDIKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFTFVTDDDAEAIANV 357

Query: 361 EKLIEKKV 368
           EKL E K+
Sbjct: 358 EKLTESKI 365


>gi|326387193|ref|ZP_08208803.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208374|gb|EGD59181.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 481

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/457 (48%), Positives = 297/457 (64%), Gaps = 10/457 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS +++ +V DAGY +PTPIQ + IP VL   D+ GIAQTGTGKTASFVLPM+
Sbjct: 22  MKFADLGLSDELLKSVYDAGYDEPTPIQAQAIPSVLMMRDLIGIAQTGTGKTASFVLPMI 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L  GR R  MPR+LILEPTRELAAQVA+NFEKYGKN++L +ALLIGG+    Q K L 
Sbjct: 82  DVLAHGRRRALMPRSLILEPTRELAAQVAENFEKYGKNHDLRMALLIGGVQMGDQVKALS 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR++D F RGK+L+   E+LVIDEADRMLDMGFIP I++I S +P TRQT
Sbjct: 142 DGVDVLIATPGRLMDLFERGKILLTGCELLVIDEADRMLDMGFIPDIESICSKLPTTRQT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++ FL NPK IEV  P+S    I    VA  ++  +K  +L+ LL+
Sbjct: 202 LLFSATMPPPIKKLADRFLSNPKYIEVARPASANINIVQHKVACASRDKRK--VLRHLLR 259

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D +   I+F N+K  V +L  SL++ GF+   IHG++DQ  R+  L  FK+G I ++ 
Sbjct: 260 T-DNVSTAIVFANRKTTVRDLAKSLKRHGFAAGEIHGDMDQPQRLAELQRFKDGQINILC 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLD+  V HVFNFD P   ++Y+HRIGRTGR G  G+AFTLV+ ED + I  +
Sbjct: 319 ASDVAARGLDVKGVSHVFNFDTPWHPDDYVHRIGRTGRGGASGRAFTLVSAEDAEAIANV 378

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR----KNNPIPQKSTGFDRRKKNYSSQ 416
           EKL    +  +  DL       EK   A   H +    K + +  +  G D   K+ ++ 
Sbjct: 379 EKLTGIPIPVITVDLGKDESEDEKPVRAPRKHTKDKPAKTDEVLPRIAG-DVETKSRAAA 437

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFM 453
           K   P K   +  +  + + E   +   + G +P F+
Sbjct: 438 KP--PRKSERREVRQPEPVFEPVGEPSAWNGPIPGFL 472


>gi|295689524|ref|YP_003593217.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295431427|gb|ADG10599.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
           21756]
          Length = 524

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/368 (52%), Positives = 254/368 (69%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+DLGLSP  + AV D GY   TPIQ + IP+ L   DV GIAQTGTGKTA+F LP++ 
Sbjct: 3   EFSDLGLSPTTLQAVADTGYTTATPIQAQAIPVALAGQDVLGIAQTGTGKTAAFTLPLID 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ GRA+ RMPR L++ PTRELA QVA +FEKY K   L+ ALLIGG+ F  Q KKL+R
Sbjct: 63  KLQSGRAKARMPRALVIAPTRELADQVASSFEKYAKGTKLSWALLIGGVSFGDQEKKLDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLLM  ++ LV+DEADRMLDMGFIP I+ I  + P  +QTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKKQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+ ++++ FL++P RIEV  P++T   I    V   +   K   L  + L  
Sbjct: 183 FFSATMPPEITRLTKQFLRDPVRIEVARPATTNANITQLLVKVPSSDPKAKRLALRALIE 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  ++ GI+FCN+K  V  +  SL+  G+    IHG++DQ  RMK L++F+ G ++++VA
Sbjct: 243 KAQIETGIVFCNRKTEVDIVAKSLKVHGYDAAPIHGDLDQTQRMKTLADFRSGALKILVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIP V HVFN+DVP+ A++Y+HRIGRTGRAGR G  + LV   D K  D + 
Sbjct: 303 SDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRTGITYMLVTPADDKGFDKVV 362

Query: 362 KLIEKKVD 369
           KLI    D
Sbjct: 363 KLIGSTPD 370


>gi|126736040|ref|ZP_01751784.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2]
 gi|126714597|gb|EBA11464.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2]
          Length = 484

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/420 (48%), Positives = 282/420 (67%), Gaps = 16/420 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L+PKV+ AV + GY  PTPIQ   I   L+  DV GIAQTGTGKTA+F LPM+T+
Sbjct: 4   FSDLNLAPKVLKAVTETGYDTPTPIQAGAIAPALEGRDVLGIAQTGTGKTAAFTLPMITL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K   L+ ALLIGG  F+ Q+K +++G
Sbjct: 64  LGRGRARARMPRSLVLAPTRELAAQVAENFDAYAKYTKLSRALLIGGTSFKDQDKIIDKG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDH  RGKL++ +++I+V+DEADRMLDMGFIP I+ I    PFTRQTL 
Sbjct: 124 VDVLIATPGRLLDHLERGKLILTDVKIMVVDEADRMLDMGFIPDIEEIFKRTPFTRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-----ATYAQYSKKCALLQQ 237
           FSATM  E+++++  FL NP +IEV   ++T   I+   V     A   + S+K  LL++
Sbjct: 184 FSATMAPEIERITNTFLSNPAKIEVARAATTNTNIKQGVVMFKGSAKPKEPSEKRELLRK 243

Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+ ++ +   N IIFCN+K +V  +  SL K G+    IHG++DQ  R K L  F++  +
Sbjct: 244 LIDAEGEACTNAIIFCNRKSDVDIVAKSLNKYGYQAAPIHGDLDQSHRTKTLDKFRDNEL 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VASD+AARGLDIP V HVFNFDVP+ AE+Y+HRIGRTGRAGR G A  +    D K+
Sbjct: 304 RILVASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRIGRTGRAGRSGTAIMICVPRDEKN 363

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           ++ +E+L+++ +  L+       P   + + A+    R  +          RRKK+ + +
Sbjct: 364 LEDVERLVKETIPRLDAPGGKAAPATAEPEKAEEKPKRTRS----------RRKKDDAPE 413


>gi|16126090|ref|NP_420654.1| DEAD-box ATP dependent DNA helicase [Caulobacter crescentus CB15]
 gi|221234860|ref|YP_002517296.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
 gi|13423288|gb|AAK23822.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter
           crescentus CB15]
 gi|220964032|gb|ACL95388.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
          Length = 517

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/378 (52%), Positives = 256/378 (67%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DLGLSP  + AV D GY   TPIQ + IP+ L   DV GIAQTGTGKTA+F LP++ 
Sbjct: 3   EFTDLGLSPTTLQAVADTGYTTATPIQAQAIPVALAGQDVLGIAQTGTGKTAAFTLPLID 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ GRA+ RMPR L++ PTRELA QVA +FEKY K   L+ ALLIGG+ F  Q KKL+R
Sbjct: 63  RLQSGRAKARMPRALVIAPTRELADQVAASFEKYAKGTKLSWALLIGGVSFGDQEKKLDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLLM  ++ LV+DEADRMLDMGFIP I+ I  + P  +QTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKKQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+ ++++ FL++P RIEV  P++T   I    V   +   K   L  + L  
Sbjct: 183 FFSATMPPEITRLTKQFLRDPVRIEVARPATTNANITQLLVKVPSSDPKAKRLALRALIE 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  ++ GI+FCN+K  V  +  SL+  G+    IHG++DQ  RMK L++F+ G ++++VA
Sbjct: 243 KAGIETGIVFCNRKTEVDIVAKSLKVHGYDAAPIHGDLDQTQRMKTLADFRSGALKILVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIP V HVFN+DVP+ A++Y+HRIGRTGRAGR G  + LV   D K  D + 
Sbjct: 303 SDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRTGITYMLVTPADDKGFDKVI 362

Query: 362 KLIEKKVDWLNGDLSSLN 379
           KLI    D    DL   N
Sbjct: 363 KLIGSTPDEEKLDLDYSN 380


>gi|114797080|ref|YP_759424.1| putative ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC
           15444]
 gi|114737254|gb|ABI75379.1| putative ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC
           15444]
          Length = 536

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/367 (54%), Positives = 265/367 (72%), Gaps = 2/367 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD GL+  ++ AV ++GY  PTPIQ + IP +L   DV G+AQTGTGKTA+FVLPM+  
Sbjct: 6   FADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  GRAR RMPR LIL PTRELAAQVA+NFEKYGK   LT+ALLIGG+ F+ Q   L+RG
Sbjct: 66  LSTGRARARMPRCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQRG 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR++D F+RGKLLM  +E L+IDEADRMLDMGFIP I+ I + +P  RQTLL
Sbjct: 126 VDVLIATPGRLMDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKICAKLPANRQTLL 185

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCALLQQLLQS 241
           FSAT   ++Q++++ F ++PK+IEV  P+ TAETI    V       K +   L++++++
Sbjct: 186 FSATFPTDIQRLAKTFQKDPKKIEVTRPAQTAETISQFVVKLPTNDGKARRTALRRVIEA 245

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + +KNGI+FCN+K  V  +  SL K G     IHG++ Q  R + L  F++G ++L+VA
Sbjct: 246 TN-VKNGIVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGKLKLLVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDVGHVFNF  P + E+Y+HRIGRTGRAGR G+++T+V   D K    + 
Sbjct: 305 SDVAARGLDIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVTPADDKSWGFVV 364

Query: 362 KLIEKKV 368
           K+I+K V
Sbjct: 365 KMIKKDV 371


>gi|315499759|ref|YP_004088562.1| dead/deah box helicase domain protein [Asticcacaulis excentricus CB
           48]
 gi|315417771|gb|ADU14411.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB
           48]
          Length = 501

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/501 (45%), Positives = 300/501 (59%), Gaps = 57/501 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL+P ++ AV D GY  PT IQ + IP+ L   DV GIAQTGTGKTA+F LPM+  
Sbjct: 4   FTDLGLNPDILKAVADTGYDTPTAIQEQAIPIALIGLDVLGIAQTGTGKTAAFTLPMIEK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  GR+R RMPR ++L PTRELA QVA+ FEKY K   L  ALLIGG+    Q  KL++G
Sbjct: 64  LASGRSRARMPRAIVLAPTRELADQVAEAFEKYAKYCKLNWALLIGGVSMADQVAKLDKG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LD F R K+++N ++++V+DEADRMLDMGFIP I+ I  L P +RQTL 
Sbjct: 124 VDVLIATPGRLLDLFERSKVMLNGVQLMVVDEADRMLDMGFIPDIERIFKLTPPSRQTLF 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
           FSATM  E+ +++E FL+NP RIEV+ P++T E I        +  SK  A  ++L    
Sbjct: 184 FSATMPPEITRLTEQFLKNPVRIEVSRPATTNENITQYVYRVPSGDSKLLAKAKRLALRT 243

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  Q  + NGI+FCN+K +V  +  SL   GF+   IHG++DQ  RMK L  F+ G ++L
Sbjct: 244 LIGQLEINNGIVFCNRKTDVDIVAKSLSVHGFNAAPIHGDLDQSLRMKTLDAFRSGELKL 303

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASD+AARGLDIP V HVFNFDVP+ A++Y+HRIGRTGRAGR G+A+ ++A  D K+ D
Sbjct: 304 LVASDVAARGLDIPSVSHVFNFDVPHHADDYVHRIGRTGRAGRTGEAYLILAPNDEKNYD 363

Query: 359 AIEKLIEKK-------VDWLNGDLSSLNPPLEKIDIAQHNHARKNN-------------- 397
            + KLI+K+       VDW    L+   P  EK    +     ++               
Sbjct: 364 KVLKLIKKEPNTLELDVDW--SPLADARPEREKPARGRGERTERDRSARPRRERGRKGES 421

Query: 398 -------------------PIPQKSTGFDRRKKNYSSQKSHIPLKESEKIS-----KLQQ 433
                              P P+K T   RR+K   S  +  P   ++ +S     K  +
Sbjct: 422 AVEAVTEAVVPEEIVVDAAPPPEKKT---RRRK---STAADTPPPRAKAVSDDFPLKDNE 475

Query: 434 DIQENDADSLGFRGNMPAFML 454
           D      D  GF G++PAFML
Sbjct: 476 DSLPKGPDCQGFGGHVPAFML 496


>gi|329889383|ref|ZP_08267726.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
 gi|328844684|gb|EGF94248.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
          Length = 490

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/389 (51%), Positives = 267/389 (68%), Gaps = 11/389 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ LGLSP  + AV D GY   TPIQ + IP+ L   DV GIAQTGTGKTA+F LPM+ 
Sbjct: 3   EFSKLGLSPTTLQAVADTGYTTATPIQEQAIPVALAGRDVLGIAQTGTGKTAAFTLPMVD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L  GRAR RMPR ++L PTRELA QVA++F KY K   L   LLIGG+    Q   L +
Sbjct: 63  RLASGRARARMPRAVVLAPTRELADQVAESFAKYAKGTRLNWVLLIGGVSMGDQIAALNK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LD F+RGK+L+  +E++V+DEADRMLDMGFIP I+ I  L P  RQTL
Sbjct: 123 GVDVLIATPGRLLDLFDRGKMLLTGVELMVVDEADRMLDMGFIPDIERIFKLTPPRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQ 240
            FSATM  E+ ++++ FL++P RIEV  P++TA+TI +H      +    K   L+ L++
Sbjct: 183 FFSATMPPEITRLTQQFLKDPTRIEVARPATTADTITQHITRLPSSDPKAKRTALRALVE 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D ++NGI+FCN+K  V  +  SL+  GF+   IHG++DQ  RMK LS+F+ G ++L+V
Sbjct: 243 RGD-VQNGIVFCNRKSEVDIVAKSLQVHGFNAAPIHGDLDQSLRMKTLSDFRSGELKLLV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFN+DVP+ A++Y+HRIGRTGRAGR G+AF +V   D K +D +
Sbjct: 302 ASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRLGEAFMIVTPADDKSLDKV 361

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
            KLI+K+          +  PL+ ID A 
Sbjct: 362 LKLIKKE---------PVELPLDDIDFAS 381


>gi|114327981|ref|YP_745138.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
 gi|114316155|gb|ABI62215.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
          Length = 763

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/362 (56%), Positives = 257/362 (70%), Gaps = 3/362 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V  A+ + GY+ PTPIQ + IP+VL   DV G AQTGTGKTASF LPM+ I
Sbjct: 225 FADLGLSEPVQRAITEMGYLHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMMDI 284

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   RAR RMPR+LILEPTRELA QVA+NF KYG+   L  ALLIGG     Q   L +G
Sbjct: 285 LSDRRARARMPRSLILEPTRELALQVAENFVKYGQYLKLNHALLIGGESMNDQRDVLSKG 344

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR++D F+RG LL+ +  ILVIDEADRMLDMGFIP ++ I SL+P  RQTL 
Sbjct: 345 VDVLIATPGRLIDLFDRGGLLLTDTRILVIDEADRMLDMGFIPDVERIVSLLPHNRQTLF 404

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++++++ FLQNPK I V  P+S A TI     A   +  K+ A L+ LL+ Q
Sbjct: 405 FSATMAPEIRRLADAFLQNPKEITVAKPASVATTITSGL-ALVGEMDKRKA-LRHLLR-Q 461

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           + ++N +IFCN+K++V  L  SL K GF+   +HG++ Q  R   L  FK G++QL+V S
Sbjct: 462 EKVQNALIFCNRKRDVDILTKSLVKHGFAAGPLHGDLAQSLRFSTLEKFKAGSLQLLVCS 521

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HVFNFDVP  AE+Y+HRIGRTGRAGR G AFTL + +D   +DAIEK
Sbjct: 522 DVAARGIDIGGLSHVFNFDVPIHAEDYVHRIGRTGRAGREGAAFTLASPDDKFAVDAIEK 581

Query: 363 LI 364
           LI
Sbjct: 582 LI 583


>gi|296536687|ref|ZP_06898752.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
 gi|296262986|gb|EFH09546.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
          Length = 560

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/378 (53%), Positives = 265/378 (70%), Gaps = 5/378 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS  ++  V +AGYV PTPIQ + IP+VL   DV G AQTGTGKTASFVLPM+ I
Sbjct: 107 FEDLGLSEALLRGVAEAGYVHPTPIQEQAIPVVLMGRDVMGCAQTGTGKTASFVLPMMDI 166

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   RA+ RMPR+LILEPTRELA QVA+NF KYG +  L  ALLIGG     Q   L++G
Sbjct: 167 LAGSRAKARMPRSLILEPTRELALQVAENFVKYGTHMKLNHALLIGGESMSDQRDVLDKG 226

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LD F RG++++ + ++LVIDEADRMLDMGFIP ++ I SL+P  RQTL 
Sbjct: 227 VDVLIATPGRLLDLFERGRVMLADCKVLVIDEADRMLDMGFIPDVERIVSLLPPLRQTLF 286

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++K+++ FLQNPK I V+ P+S A TI       + Q   K   L++L++SQ
Sbjct: 287 FSATMAPEIRKLADAFLQNPKTISVSAPASVATTITAGLA--FVQPEDKRRALRRLIRSQ 344

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D ++N +IFCN+K++V  L  SL K GF   A+HG++ Q  R   L  FK G +QL+V S
Sbjct: 345 D-VQNALIFCNRKRDVDILHKSLSKHGFKAGALHGDLPQSVRFATLEKFKAGELQLLVCS 403

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HV+NFDVP R E+Y+HRIGRTGRAGR G A+T+   +D+K + AIE 
Sbjct: 404 DVAARGIDIGGLSHVYNFDVPFRDEDYVHRIGRTGRAGREGHAYTIATADDVKLVAAIEA 463

Query: 363 LIEKKVDWLNGDLSSLNP 380
           L  K +  +  ++  L P
Sbjct: 464 LTGKPIPRI--EIEGLEP 479


>gi|304319730|ref|YP_003853373.1| hypothetical protein PB2503_00757 [Parvularcula bermudensis
           HTCC2503]
 gi|303298633|gb|ADM08232.1| hypothetical protein PB2503_00757 [Parvularcula bermudensis
           HTCC2503]
          Length = 460

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/389 (54%), Positives = 277/389 (71%), Gaps = 7/389 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL  K++ A+ ++GY  PTPIQ   IP  L+  DV GIAQTGTGKTASFVLP++  
Sbjct: 16  FSELGLDTKILEALTESGYTHPTPIQADAIPEALRGRDVLGIAQTGTGKTASFVLPVIHR 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GRAR RMPR+LIL PTRELAAQV++ FEKYGKN+ L++ALLIGG+ F  Q+ KL RG
Sbjct: 76  LARGRARARMPRSLILAPTRELAAQVSEQFEKYGKNHKLSMALLIGGVSFADQDAKLTRG 135

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LDH  RGKLL+  +E++V+DEADRMLDMGFIP ++ I  L PFTRQTL 
Sbjct: 136 VDVLIATPGRLLDHHERGKLLLTGLEVMVVDEADRMLDMGFIPDLERIFKLTPFTRQTLF 195

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCALLQQLLQS 241
           FSATM  E+Q++++ FL  P RIEV  P++TA+TI        +   K K A L+ L+++
Sbjct: 196 FSATMPPEIQRLTDQFLSAPARIEVAKPATTAKTITQRIARLPSGEDKLKRAALRHLVET 255

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + +KNGIIFCN+KKNV  +  SL++ GF    IHG++ Q  R + L  F++G ++L+VA
Sbjct: 256 AENLKNGIIFCNRKKNVDVIAKSLQEHGFDARPIHGDLPQSFRTETLQMFRDGGLKLLVA 315

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI- 360
           SD+AARGLDIPDV HVFNF VP  A++Y+HRIGRTGRAGR G A  LV  +D K  DA+ 
Sbjct: 316 SDVAARGLDIPDVSHVFNFSVPINADDYVHRIGRTGRAGRLGHAVMLVTPDDGKAFDAVL 375

Query: 361 -----EKLIEKKVDWLNGDLSSLNPPLEK 384
                +K+ E  +  L  D +    P EK
Sbjct: 376 KVTGLDKIEEHDISALLDDWNGAARPPEK 404


>gi|254421014|ref|ZP_05034738.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
 gi|196187191|gb|EDX82167.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
          Length = 545

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/366 (53%), Positives = 256/366 (69%), Gaps = 4/366 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ LGLSP  + AV D GY   TPIQ + IP+ L   DV GIAQTGTGKTA+F LP++ 
Sbjct: 3   EFSQLGLSPTTLQAVADTGYTTATPIQEQAIPVALAGRDVLGIAQTGTGKTAAFTLPLVE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L  GRAR RMPR ++L PTRELA QVA++F KY K   LT  LLIGG+    Q   L +
Sbjct: 63  RLASGRARARMPRAIVLAPTRELADQVAESFAKYAKGTKLTWVLLIGGVSMGDQVAALNK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LD F RGK+L+  +EI+V+DEADRMLDMGFIP I+ I  L P  RQTL
Sbjct: 123 GVDVLIATPGRLLDLFERGKMLLTGVEIMVVDEADRMLDMGFIPDIERIFKLTPPRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV--ATYAQYSKKCALLQQLL 239
            FSATM  E+ +++  FL++P RIE + P+ TA+TI    V   T    +K+ AL  + L
Sbjct: 183 FFSATMPPEITRLTAAFLKDPTRIEASRPAMTADTITQYIVRIPTSDPKAKRAAL--RAL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+  ++NGI+FCN+K  V  +  SL+  GF   AIHG++DQ  R K L++F+ G ++++
Sbjct: 241 MSRTDVRNGIVFCNRKSEVDIVAKSLKTHGFDAAAIHGDLDQSHRTKTLADFRSGALKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLDIPDV HVFN+DV + A++Y+HRIGRTGRAG+ G+AF +V   D K +D 
Sbjct: 301 VASDVAARGLDIPDVSHVFNYDVSHHADDYVHRIGRTGRAGKLGQAFMIVTPADDKSLDK 360

Query: 360 IEKLIE 365
           + KLI+
Sbjct: 361 VLKLIK 366


>gi|83310484|ref|YP_420748.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
 gi|82945325|dbj|BAE50189.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
           AMB-1]
          Length = 583

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/362 (54%), Positives = 263/362 (72%), Gaps = 3/362 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL P+++ A+ ++GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LPM+ I
Sbjct: 40  FEDLGLGPEILKALAESGYTHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMIEI 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  GRA+ RMPR+LIL PTRELAAQVA+NF+KYGK + L  AL+IGG     Q   L+RG
Sbjct: 100 LAAGRAKARMPRSLILAPTRELAAQVAENFDKYGKYHPLKKALIIGGESMSDQVALLDRG 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LD F RG++L+N++++LVIDEADRMLDMGFIP ++ I  L+P  RQTL 
Sbjct: 160 VDVLIATPGRLLDMFERGRILLNDVKVLVIDEADRMLDMGFIPDVEKIVGLLPKIRQTLF 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++++++ FL NPK ++V+T +S A T+     A   +  K+   L+ L++ +
Sbjct: 220 FSATMGPEIRRLADAFLMNPKEVKVSTGASAATTVVQAL-AVVEEIDKR-ETLRHLIRIE 277

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           + +KN  IFCN+K++V  L  SL+K GF V  +HG++ Q +R + L  FK+G  +LMV S
Sbjct: 278 E-VKNAFIFCNRKRDVDVLFRSLKKHGFDVVQLHGDMAQSARGETLEKFKKGEARLMVCS 336

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  V HVFNFDVP  AE+Y+HRIGRTGRAG  G AFT+ + +D + + AIE 
Sbjct: 337 DVAARGIDISAVSHVFNFDVPIHAEDYVHRIGRTGRAGMEGHAFTIASPDDGRFVGAIEA 396

Query: 363 LI 364
           +I
Sbjct: 397 MI 398


>gi|296116543|ref|ZP_06835153.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976755|gb|EFG83523.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 539

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/478 (46%), Positives = 286/478 (59%), Gaps = 25/478 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGLS  +  A+ + GY  PTPIQ + IP +L   DV G+AQTGTGKTASF LPML I
Sbjct: 50  FSELGLSAPIQQAIEEMGYRHPTPIQAQAIPYILMGRDVLGVAQTGTGKTASFTLPMLEI 109

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   RAR RMPR+LILEPTRELA QVA+NF  YGK+  LT ALLIGG     Q + L RG
Sbjct: 110 LSGSRARARMPRSLILEPTRELALQVAENFVNYGKHLKLTHALLIGGESMAEQKEALNRG 169

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR++D F RG LL+   ++LVIDEADRMLDMGFIP I+ I S++   RQTL 
Sbjct: 170 VDVLIATPGRLIDLFERGGLLLTQTKLLVIDEADRMLDMGFIPDIEKIVSMLSPIRQTLF 229

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++++++ FL NPK I V+ PSS A TIE   V       ++   L++LL+  
Sbjct: 230 FSATMAPEIRRLADMFLHNPKEITVSRPSSVASTIETGLVIVEEDDKRRA--LRKLLRES 287

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D M+N IIFCN+K++V  LC SL K GFS  A+HG++ Q  R   L  FK G ++++V S
Sbjct: 288 D-MQNAIIFCNRKRDVDVLCKSLLKHGFSAGALHGDLPQSLRFSTLEAFKSGELKILVCS 346

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HVFNFD+P  AE+Y+HRIGRTGRAGR G A++L    +    +AIEK
Sbjct: 347 DIAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGRTGHAYSLATPYEQPLAEAIEK 406

Query: 363 LIEKKVDWL------NGDLSSLNPPLEKIDIAQHNHARKN--NPIPQKSTGFDRRKKNYS 414
           L  K +  L        + S    P  +    +    R     P P   T    RK    
Sbjct: 407 LTGKPIVRLEVKGIDQTEWSDEPRPRGRKRGGKPAEVRTTPQAPAPTGKTSAPSRKPAVE 466

Query: 415 SQKSHIPLK--------------ESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
           S+ +  P                     +   ++   N+    GF G++PAFML   R
Sbjct: 467 SRNAVAPTAVSATAAPPARPASPPRHAATAHAREEHGNERPQAGFGGDIPAFMLLPRR 524


>gi|330994043|ref|ZP_08317973.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter sp. SXCC-1]
 gi|329758989|gb|EGG75503.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter sp. SXCC-1]
          Length = 508

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/366 (54%), Positives = 257/366 (70%), Gaps = 3/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGLS  +  A+ + GY  PTPIQ + IP VL   DV G+AQTGTGKTASF LPML I
Sbjct: 31  FSELGLSEPIQRAIDEMGYRHPTPIQAQAIPYVLMGRDVLGVAQTGTGKTASFTLPMLEI 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  RAR RMPR+LILEPTRELA QVA+NF  YGK+  LT ALLIGG     Q + L RG
Sbjct: 91  LQGSRARARMPRSLILEPTRELALQVAENFVNYGKHLKLTHALLIGGESMAEQKEVLNRG 150

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR++D F RG LL+   ++LVIDEADRMLDMGFIP I+ I S++   RQTL 
Sbjct: 151 VDVLIATPGRLIDLFERGGLLLTQTKLLVIDEADRMLDMGFIPDIEKIVSMLSPLRQTLF 210

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++++++ FL+NPK I V+ PSS A TIE       A+  ++   L++LL+  
Sbjct: 211 FSATMAPEIRRLADAFLRNPKEITVSRPSSVASTIETGLAIVDAKDKRRA--LRKLLREA 268

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D M+N I+FCN+K++V  LC SL K GFS  A+HG++ Q  R   L  FK G ++++V S
Sbjct: 269 D-MQNAIVFCNRKRDVDVLCKSLIKHGFSAGALHGDLAQSVRFSTLEAFKSGELKILVCS 327

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HVFNFD+P  AE+Y+HRIGRTGRAGR G A++L   ++     AIEK
Sbjct: 328 DIAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGRTGHAYSLATPDEEALAQAIEK 387

Query: 363 LIEKKV 368
           L  K +
Sbjct: 388 LTGKPI 393


>gi|329114670|ref|ZP_08243429.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
 gi|326696150|gb|EGE47832.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
          Length = 637

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 223/464 (48%), Positives = 288/464 (62%), Gaps = 19/464 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL LS  ++ A+ D GY  PTPIQ + IP +L   DV G+AQTGTGKTASF LPML I
Sbjct: 155 FADLELSEPLLRAISDMGYTHPTPIQAQAIPAILMARDVMGVAQTGTGKTASFTLPMLEI 214

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   RAR RMPR+LILEPTRELA QVA+NF  YGK   L  ALLIGG     Q + L RG
Sbjct: 215 LADSRARARMPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMADQKEVLNRG 274

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LD F RG L++N+  ILVIDEADRMLDMGFIP I+ I  L+P  RQTLL
Sbjct: 275 VDVLIATPGRLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLPPNRQTLL 334

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   ++K+++ FL +PK I V   SS A TI    V    +YSK+   L+QLL+  
Sbjct: 335 FSATMAPTIRKLADTFLHSPKEITVARQSSVATTITTGIV-VVDEYSKR-ETLRQLLKDP 392

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             ++N I+FCN+K++V  L  SL K GFS  A+HG++ Q  R   L  FK   ++++V S
Sbjct: 393 -ALQNAIVFCNRKRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKNDELKVLVCS 451

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HVFNFD+P  AE+Y+HRIGRTGRAGR G A+++    D    +AIEK
Sbjct: 452 DVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGREGHAYSIATPYDKALAEAIEK 511

Query: 363 LIEKKVDWLNGD-------LSSLNPP---LEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           L  K++  +  D            PP     K    Q N  R+ NP P      ++++  
Sbjct: 512 LTGKEIPRMALDGVKQLEWSDEKRPPAGRTRKPHTPQRNRERE-NPAP---AAREQQQPE 567

Query: 413 YSSQKSHIPLKESEKISKLQQD--IQENDADSLGFRGNMPAFML 454
              Q++  P ++  + ++ Q+D        D  GF   +PAFML
Sbjct: 568 AKLQQTARPERQPTRNTRHQRDEIPPAPGGDVQGFGDMVPAFML 611


>gi|332186551|ref|ZP_08388295.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
 gi|332013534|gb|EGI55595.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
          Length = 469

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/371 (56%), Positives = 265/371 (71%), Gaps = 1/371 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS +++  V DAGY +PTPIQ   IP VL   D+ GIAQTGTGKTASFVLPM+
Sbjct: 1   MSFADLGLSDELLKTVTDAGYTEPTPIQASAIPSVLMMRDIIGIAQTGTGKTASFVLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  GR+R RMPR+LILEPTRELAAQVA+NFEKYG N+ L++ALLIGG+    Q K LE
Sbjct: 61  DILAHGRSRARMPRSLILEPTRELAAQVAENFEKYGANHKLSMALLIGGVSMGDQIKALE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR++D F RG +L+    +LVIDEADRMLDMGFIP I+ I + +P  RQT
Sbjct: 121 KGVDVLIATPGRLMDLFQRGNILLTGCSMLVIDEADRMLDMGFIPDIEEICTKLPKQRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++ FL+NPK IEV  P+ST   I    V    Q  +K   L+QLL+
Sbjct: 181 LLFSATMPPPIKKLADKFLENPKMIEVARPASTNINITQFVVPVAPQSFEKRKRLRQLLK 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD ++  IIFCN+K  V  L  SL++ GF    IHG+++Q  R+  L  FK G + ++V
Sbjct: 241 -QDEVRTAIIFCNRKTTVRELNKSLKQHGFRSGEIHGDMEQPQRLAELDLFKRGEVNILV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDI  V HVFNFD P   ++Y+HRIGRTGR G  G A+T VA +D ++ID I
Sbjct: 300 ASDVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRGGATGTAYTFVAPDDAENIDNI 359

Query: 361 EKLIEKKVDWL 371
           EKL  +++D L
Sbjct: 360 EKLTGQRIDRL 370


>gi|148259867|ref|YP_001233994.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium
           cryptum JF-5]
 gi|146401548|gb|ABQ30075.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5]
          Length = 503

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/378 (53%), Positives = 265/378 (70%), Gaps = 5/378 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLS  ++ A+ + GY+ PTPIQ + IP VL   DV G AQTGTGKTASF LPML I
Sbjct: 21  FASLGLSEPILKALEEKGYLNPTPIQEQAIPTVLMGRDVLGCAQTGTGKTASFTLPMLDI 80

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   RAR RMPR+LILEPTRELA QVA+NF +YGK+  L  ALLIGG     Q   L RG
Sbjct: 81  LSGSRARARMPRSLILEPTRELALQVAENFVQYGKHLKLNHALLIGGESMGEQRDVLTRG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR++D F RG LL++++ +LVIDEADRMLDMGFIP I+ I SL+P  RQTL 
Sbjct: 141 VDVLIATPGRLIDIFERGGLLLSDVRVLVIDEADRMLDMGFIPDIERIVSLLPTMRQTLF 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++++++ FL NPK+I V+ P++ A TI     +  A + K+ A L++L++++
Sbjct: 201 FSATMAPEIRRLADAFLSNPKQITVSRPATVATTITEGL-SLVATHDKREA-LRRLIRTE 258

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D ++N ++FCN+K++V  LC SL +  FS   +HG++ Q +R   L  FK G I+L+V S
Sbjct: 259 D-VQNALVFCNRKRDVDILCKSLTRHKFSAGMLHGDMPQSARFATLERFKAGEIRLLVCS 317

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HVFNFDVP+ AE+Y+HRIGRTGRAG  G+A TL    D   +DAIE 
Sbjct: 318 DVAARGIDIGGLSHVFNFDVPHHAEDYVHRIGRTGRAGMQGRALTLATPADRAAVDAIEL 377

Query: 363 LIEKKVDWLNGDLSSLNP 380
           LI   +  L  D   L+P
Sbjct: 378 LIGHPIPRLAVD--GLDP 393


>gi|326403205|ref|YP_004283286.1| ATP-dependent RNA helicase [Acidiphilium multivorum AIU301]
 gi|325050066|dbj|BAJ80404.1| ATP-dependent RNA helicase [Acidiphilium multivorum AIU301]
          Length = 510

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/378 (53%), Positives = 266/378 (70%), Gaps = 5/378 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLS  ++ A+ + GY+ PTPIQ + IP VL   DV G AQTGTGKTASF LPML I
Sbjct: 28  FASLGLSEPILKALEEKGYLNPTPIQEQAIPTVLMGRDVLGCAQTGTGKTASFTLPMLDI 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   RAR RMPR+LILEPTRELA QVA+NF +YGK+  L  ALLIGG     Q   L RG
Sbjct: 88  LSGSRARARMPRSLILEPTRELALQVAENFVQYGKHLKLNHALLIGGESMGEQRDVLTRG 147

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR++D F RG LL++++ +LVIDEADRMLDMGFIP I+ I SL+P  RQTL 
Sbjct: 148 VDVLIATPGRLIDIFERGGLLLSDVRVLVIDEADRMLDMGFIPDIERIVSLLPTMRQTLF 207

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++++++ FL NPK+I V+ P++ A TI    ++  A + K+ A L++L++++
Sbjct: 208 FSATMAPEIRRLADAFLSNPKQITVSRPATVATTITEG-LSLVATHDKREA-LRRLIRTE 265

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D ++N ++FCN+K++V  LC SL +  FS   +HG++ Q +R   L  FK G I+L+V S
Sbjct: 266 D-VQNALVFCNRKRDVDILCKSLTRHKFSAGMLHGDMPQSARFATLERFKAGEIRLLVCS 324

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HVFNFDVP+ AE+Y+HRIGRTGRAG  G+A TL    D   +DAIE 
Sbjct: 325 DVAARGIDIGGLSHVFNFDVPHHAEDYVHRIGRTGRAGMQGRALTLATPADRAAVDAIEL 384

Query: 363 LIEKKVDWLNGDLSSLNP 380
           LI   +  L  D   L+P
Sbjct: 385 LIGHPIPRLAVD--GLDP 400


>gi|258542730|ref|YP_003188163.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256633808|dbj|BAH99783.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636867|dbj|BAI02836.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639920|dbj|BAI05882.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-07]
 gi|256642976|dbj|BAI08931.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646031|dbj|BAI11979.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649084|dbj|BAI15025.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652071|dbj|BAI18005.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655128|dbj|BAI21055.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-12]
          Length = 636

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/468 (46%), Positives = 286/468 (61%), Gaps = 16/468 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL LS  ++ A+ D GY  PTPIQ + IP +L   DV G+AQTGTGKTASF LPML I
Sbjct: 157 FADLELSEPILRAISDMGYTHPTPIQEQAIPAILMARDVMGVAQTGTGKTASFTLPMLEI 216

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   RAR RMPR+LILEPTRELA QVA+NF  YGK   L  ALLIGG     Q + L RG
Sbjct: 217 LSDSRARARMPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMADQKEVLNRG 276

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LD F RG L++N+  ILVIDEADRMLDMGFIP I+ I  L+P  RQTLL
Sbjct: 277 VDVLIATPGRLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLPPNRQTLL 336

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   ++K+++ FL +PK I V   SS A TI    V    +YSK+   L+QLL+  
Sbjct: 337 FSATMAPTIRKLADAFLHSPKEITVARQSSVATTITTGIV-VVDEYSKR-ETLRQLLKDP 394

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             ++N I+FCN+K++V  L  SL K GFS  A+HG++ Q  R   L  FK   ++++V S
Sbjct: 395 -ALQNAIVFCNRKRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKNDELKVLVCS 453

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HVFNFD+P  AE+Y+HRIGRTGRAGR G A+++    D    +AIEK
Sbjct: 454 DVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGREGHAYSIATPYDKALAEAIEK 513

Query: 363 LIEKKVDWLNGD-------LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           L  K++  +  D            PP  +    +     + N +P        ++     
Sbjct: 514 LTGKEIPRMALDGVKQLEWSDEKRPPAGRTRKPRTPQRERENAVPTPR----EQQPEAKP 569

Query: 416 QKSHIPLKESEKISKLQQD--IQENDADSLGFRGNMPAFMLPKNRGKL 461
           Q++  P ++  + ++ Q+D        D  GF   +PAFML   R  +
Sbjct: 570 QQTARPERQPTRNTRHQRDEIPPAPGGDVQGFGDMVPAFMLLPRRSSV 617


>gi|149184420|ref|ZP_01862738.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
 gi|148831740|gb|EDL50173.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
          Length = 359

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/347 (56%), Positives = 253/347 (72%), Gaps = 3/347 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS  ++ AV +AGY +PTPIQ + IP +L   D+ GIAQTGTGKTASFVLPM+
Sbjct: 1   MSFADLGLSEDLLKAVEEAGYTEPTPIQAQAIPPILMMKDIIGIAQTGTGKTASFVLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ++  GR R  MPR+LIL PTRELAAQVA+NFEKYGKN++L +ALLIGG+    Q K L 
Sbjct: 61  DVMASGRRRALMPRSLILAPTRELAAQVAENFEKYGKNHDLKLALLIGGVQMGDQIKALN 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR++D F RGK+L+N  E+LVIDEADRMLDMGFIP I+ I S +P  RQT
Sbjct: 121 EGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIEFICSKLPEQRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++K+++ FL NPKRIEV+  ++T + I    +   ++  KK   L+ LL+
Sbjct: 181 MLFSATMPPPIEKLAKKFLDNPKRIEVSRAATTNKDITAFKIPVESR--KKRETLRWLLR 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D ++  IIF N+K  V  L  SL++ GF+   IHG++DQ SR+K L  FK G + ++V
Sbjct: 239 N-DHVETAIIFANRKTTVRELNKSLQQHGFASSEIHGDMDQSSRIKELDRFKNGEVNILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           ASD+AARGLD+  V HVFNFD P   ++Y+HRIGRTGRAG  G+AFT
Sbjct: 298 ASDVAARGLDVKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFT 344


>gi|87199313|ref|YP_496570.1| DEAD/DEAH box helicase-like [Novosphingobium aromaticivorans DSM
           12444]
 gi|87134994|gb|ABD25736.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 464

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/368 (56%), Positives = 266/368 (72%), Gaps = 3/368 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS +++ +VLDAGY +PTPIQ + IP VL   D+ GIAQTGTGKTA FVLPM+
Sbjct: 1   MKFADLGLSDELLKSVLDAGYDEPTPIQAQAIPAVLMMKDIIGIAQTGTGKTAGFVLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  GR R  MPR+LILEPTRELAAQVA+NFEKYGKN++L +ALLIGG+    Q K L+
Sbjct: 61  DILAHGRRRALMPRSLILEPTRELAAQVAENFEKYGKNHDLKMALLIGGVQMGDQVKALQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR++D F RGK+L+   E+LVIDEADRMLDMGFIP I+NI S +P TRQT
Sbjct: 121 EGVDVLIATPGRLMDLFERGKILLTGCEMLVIDEADRMLDMGFIPDIENICSKLPTTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++ FL NPK IEV  P++T   I    V +  +  +K  +L+ LL+
Sbjct: 181 LLFSATMPPPIKKLADKFLSNPKSIEVARPAATNTNIAQFKVRSTTR--QKREVLRHLLR 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D +   IIF N+K  V  L  SL++ GF+   IHG++DQ +R   L  FK+G I ++ 
Sbjct: 239 T-DNVSTAIIFANRKTTVRELAKSLQRHGFAAGEIHGDMDQSARNAELQKFKDGEISILC 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLD+  V HVFNFD P   ++Y+HR+GRTGR G  G+AFTLV+ ED + I+ +
Sbjct: 298 ASDVAARGLDVKGVSHVFNFDTPWHPDDYVHRVGRTGRGGATGRAFTLVSDEDSESIENV 357

Query: 361 EKLIEKKV 368
           EKL   K+
Sbjct: 358 EKLQGTKI 365


>gi|148553067|ref|YP_001260649.1| DEAD/DEAH box helicase domain-containing protein [Sphingomonas
           wittichii RW1]
 gi|148498257|gb|ABQ66511.1| DEAD/DEAH box helicase domain protein [Sphingomonas wittichii RW1]
          Length = 448

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/368 (56%), Positives = 263/368 (71%), Gaps = 3/368 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS +++ AV +AGY +PTPIQ + IP VL   D+ GIAQTGTGKTASFVLPM+
Sbjct: 1   MSFADLGLSDELLRAVSEAGYSEPTPIQAQAIPPVLMMKDLIGIAQTGTGKTASFVLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  GR+R RMPR+LILEPTRELAAQVA+NFEKYGK + LT+ALLIGG+    Q   LE
Sbjct: 61  DILAHGRSRARMPRSLILEPTRELAAQVAENFEKYGKYHKLTMALLIGGVNMGDQVAALE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR++D F RGK+L+    +LVIDEADRMLDMGFIP I+ I + +P  RQT
Sbjct: 121 KGVDVLIATPGRLMDLFGRGKILLTGCSLLVIDEADRMLDMGFIPDIEEICTKLPAQRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++ FL NPK+IEV+ P+ST   I+   V T ++  ++   L+ LL 
Sbjct: 181 LLFSATMPAPIKKLADKFLSNPKQIEVSRPASTNLAIDQSLVETSSRAKRET--LRGLLN 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +   IIF N+K  V +L  SL + GF    IHG+++Q  R++ L  FK G I ++V
Sbjct: 239 GGD-VSTAIIFSNRKTTVRDLAQSLGRYGFRAGQIHGDMEQPERLRELDRFKGGEINILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDI  V HV NFDVP   ++Y+HR+GRTGR G  G A TLV  ED + I+AI
Sbjct: 298 ASDVAARGLDIKGVSHVINFDVPWHPDDYVHRVGRTGRGGATGTAITLVTPEDAEAIEAI 357

Query: 361 EKLIEKKV 368
           EKL   K+
Sbjct: 358 EKLTGNKI 365


>gi|254454125|ref|ZP_05067562.1| ATP-dependent RNA helicase RhlE [Octadecabacter antarcticus 238]
 gi|198268531|gb|EDY92801.1| ATP-dependent RNA helicase RhlE [Octadecabacter antarcticus 238]
          Length = 501

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/355 (51%), Positives = 256/355 (72%), Gaps = 7/355 (1%)

Query: 41  VCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN 100
           + GIAQTGTGKTA F LPM+T+L++GRAR RMPR+L+L PTRELAAQVA+NF+ Y K   
Sbjct: 1   MLGIAQTGTGKTAGFTLPMITMLKRGRARARMPRSLVLAPTRELAAQVAENFDTYAKYTK 60

Query: 101 LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160
           LT ALLIGG+ F+ Q+  ++RG DVLI TPGR+LDHF RGKL++++++I+V+DEADRMLD
Sbjct: 61  LTKALLIGGVSFKEQDNLIDRGVDVLIATPGRLLDHFERGKLILSDVKIMVVDEADRMLD 120

Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
           MGFIP I+ I  L PFTRQTL FSATM  E+++++  FL NP +IEV   ++T+ETI   
Sbjct: 121 MGFIPDIERIFGLTPFTRQTLFFSATMAPEIERITNTFLSNPAKIEVARAATTSETITQG 180

Query: 221 FV-----ATYAQYSKKCALLQQLLQSQDT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
            +        ++ S+K  LL+ ++ S+    +NGIIFCN+K +V  +  S+ K G     
Sbjct: 181 VIMFKGSKKASEASEKQKLLRDIIASEGADCRNGIIFCNRKIDVDAVAKSMTKAGLDASP 240

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           IHG+++Q  RM+ L+ F++GT++ +VASD+AARGLDIP+V HVFN+DVP+ AE+Y+HRIG
Sbjct: 241 IHGDLEQSHRMRTLAKFRDGTLRFLVASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIG 300

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN-GDLSSLNPPLEKIDIA 388
           RTGRAG+ G    +    D K+ D IE+L+E  +  +    ++S+ P    +D A
Sbjct: 301 RTGRAGKTGTTIMICTPRDQKNFDDIERLVEMAIPRMELPGMASVAPVATPVDAA 355


>gi|209545432|ref|YP_002277661.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533109|gb|ACI53046.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 555

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/370 (53%), Positives = 250/370 (67%), Gaps = 3/370 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGLS  +  A+ D GY  PTPIQ + IP VL   DV G+AQTGTGKTASF LPML I
Sbjct: 51  FSDLGLSDPIQRAIDDMGYRHPTPIQAQAIPYVLMGRDVLGVAQTGTGKTASFTLPMLEI 110

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   RAR RMPR+LILEPTRELA QVA+NF  YGK   L  ALLIGG     Q   L RG
Sbjct: 111 LSGSRARARMPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMAEQKDVLNRG 170

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR++D F RG LL+    +LVIDEADRMLDMGFIP I+ I +++   RQTL 
Sbjct: 171 VDVLIATPGRLIDLFERGGLLLTQTRLLVIDEADRMLDMGFIPDIEKIVAMLSPVRQTLF 230

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++++++ FLQNPK I V+ PSS A TIE   V      + K  +L+++L+  
Sbjct: 231 FSATMAPEIRRLADMFLQNPKEITVSRPSSVATTIETGLVVV--DEADKRRVLRRMLR-D 287

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D ++N I+FCN+K++V  L  SL K  FS  A+HG++ Q  R   L  FK G ++++V S
Sbjct: 288 DAVQNAIVFCNRKRDVDVLYKSLVKHDFSAGALHGDLPQSVRFATLERFKSGELKILVCS 347

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HVFNFD+P  AE+Y+HRIGRTGRAGR G A++L    D    +AIE 
Sbjct: 348 DVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGRSGHAYSLATPYDRALAEAIET 407

Query: 363 LIEKKVDWLN 372
           LI   +  L 
Sbjct: 408 LIGHAIPRLE 417


>gi|58038579|ref|YP_190543.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58000993|gb|AAW59887.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 793

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/496 (42%), Positives = 287/496 (57%), Gaps = 52/496 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  ++ A+ + GY  PTPIQ + IP VL+ HDV G+AQTGTGKTASF LPML  
Sbjct: 293 FADLGLSEPIMRAIEELGYEHPTPIQAQAIPEVLKGHDVLGVAQTGTGKTASFTLPMLQK 352

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   RAR RMPR+LILEPTRELA QVA+NF+ YGK   LT ALLIGG     Q   L RG
Sbjct: 353 LAGSRARARMPRSLILEPTRELALQVAENFKLYGKYLRLTHALLIGGESMAEQRDVLNRG 412

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LD F RG LL+     LVIDEADRMLDMGFIP I+ I +L+P  RQTL 
Sbjct: 413 VDVLIATPGRLLDLFGRGGLLLTQTSTLVIDEADRMLDMGFIPDIEKIVALLPAHRQTLF 472

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++++++ FL++P  I V+  SS A TIE   V       ++   L++LL+ +
Sbjct: 473 FSATMAPEIRRLADAFLRHPVEITVSRQSSVATTIEEALVIVPEDEKRRT--LKKLLRRE 530

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           + +++ I+FCN+K++V  +   L K       +HG++ Q  R   L  F+ G ++ +V S
Sbjct: 531 N-VQSAIVFCNRKRDVDMIQQYLTKHDIEAGHLHGDLAQSLRFSTLERFRSGELKFLVCS 589

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HVFN+D+P  AE+Y+HRIGRTGRAG  G AF+L    D + ++AIE 
Sbjct: 590 DVAARGIDIGGLSHVFNYDLPFNAEDYVHRIGRTGRAGNEGHAFSLATPRDRRLLEAIET 649

Query: 363 LIEK-----------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ----KSTGFD 407
           L  K            VDW   +              +   A    P PQ    +     
Sbjct: 650 LTGKVIARPVLEGITTVDWAPEE-------------GERRPAETATPAPQDVAEEGEQRP 696

Query: 408 RRKKNYSSQKSHIPLKESEKISKL----------------QQDIQ-----ENDADSLGFR 446
           R+++    +++     ESE + ++                 + ++     END    GF 
Sbjct: 697 RKRRRGGRKRNRGDRDESETVQQVAPTAVASVAVIEAPVSHRSVELAPAFENDGPKTGFG 756

Query: 447 GNMPAFMLPKNRGKLN 462
           G+ PAFML   R K+ 
Sbjct: 757 GDTPAFMLVPRRRKVT 772


>gi|23010493|ref|ZP_00051162.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 407

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 172/292 (58%), Positives = 222/292 (76%)

Query: 87  QVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNN 146
           QV +NFE+YG N+ L VAL+IGG+ F  Q+ KL RG DVLI TPGR+LDHF RGKLL+  
Sbjct: 1   QVEENFERYGTNHKLNVALIIGGVSFADQDAKLTRGTDVLIATPGRLLDHFERGKLLLTG 60

Query: 147 IEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIE 206
           +E+LVIDEADRMLDMGFIP I+ I  +VPFTRQTL FSATM  E++++++ FL NP+R+E
Sbjct: 61  VELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFSATMPPEIERLADMFLHNPQRVE 120

Query: 207 VNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLE 266
           V  PSSTA TIE   VAT A+  +K  +L+ L++S + ++NGIIFCN+K++V  L  SL 
Sbjct: 121 VARPSSTATTIEQRLVATGAEGHEKRKVLRHLIRSANELQNGIIFCNRKRDVAQLQRSLT 180

Query: 267 KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
             GF+  A+HG++DQR+RM  L  F+ G   L+VASD+AARGLDIP V HVFNFDVP+  
Sbjct: 181 SHGFNAAALHGDMDQRARMAALDGFRSGETPLLVASDVAARGLDIPAVSHVFNFDVPHHP 240

Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           E+Y+HRIGRTGRAGR G AFTL ++ D + + AIE LI + + WL GDLS+L
Sbjct: 241 EDYVHRIGRTGRAGRAGHAFTLASRADERSLAAIESLIGRPIAWLEGDLSTL 292


>gi|162148820|ref|YP_001603281.1| cold-shock DEAD box protein A-like protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787397|emb|CAP56992.1| Cold-shock DEAD box protein A homolog [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 483

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/353 (54%), Positives = 239/353 (67%), Gaps = 3/353 (0%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY  PTPIQ + IP VL   DV G+AQTGTGKTASF LPML IL   RAR RMPR+LILE
Sbjct: 2   GYRHPTPIQAQAIPYVLMGRDVLGVAQTGTGKTASFTLPMLEILSGSRARARMPRSLILE 61

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA QVA+NF  YGK   L  ALLIGG     Q   L RG DVLI TPGR++D F R
Sbjct: 62  PTRELALQVAENFVNYGKYLKLNHALLIGGESMAEQKDVLNRGVDVLIATPGRLIDLFER 121

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
           G LL+    +LVIDEADRMLDMGFIP I+ I +++   RQTL FSATM  E++++++ FL
Sbjct: 122 GGLLLTQTRLLVIDEADRMLDMGFIPDIEKIVAMLSPVRQTLFFSATMAPEIRRLADMFL 181

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
           QNPK I V+ PSS A TIE   V      + K  +L+++L+  D ++N I+FCN+K++V 
Sbjct: 182 QNPKEITVSRPSSVATTIETGLVVV--DEADKRRVLRRMLR-DDAVQNAIVFCNRKRDVD 238

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            L  SL K  FS  A+HG++ Q  R   L  FK G ++++V SD+AARG+DI  + HVFN
Sbjct: 239 VLYKSLVKHDFSAGALHGDLPQSVRFATLERFKSGELKILVCSDVAARGIDIGGLSHVFN 298

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
           FD+P  AE+Y+HRIGRTGRAGR G A++L    D    +AIE LI   +  L 
Sbjct: 299 FDLPFHAEDYVHRIGRTGRAGRSGHAYSLATPYDRALAEAIETLIGHAIPRLE 351


>gi|90419641|ref|ZP_01227551.1| ATP-dependent RNA helicase rhlE [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336578|gb|EAS50319.1| ATP-dependent RNA helicase rhlE [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 382

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/291 (60%), Positives = 224/291 (76%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGLS KV+ AV  AGY +PTPIQ + IP  L+R DV GIAQTGTGKTASFVLPMLT+
Sbjct: 23  FSELGLSAKVLAAVHAAGYNEPTPIQEQAIPHALERRDVLGIAQTGTGKTASFVLPMLTM 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+GRAR RMPRTLI+EPTRELAAQVA++F +YG +  L VALLIGG+ F  Q++K++RG
Sbjct: 83  LEQGRARARMPRTLIIEPTRELAAQVAESFTRYGLDQKLNVALLIGGVSFADQDRKIDRG 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLI TPGR+LDHF RGKLLM  +E+LVIDEADRMLDMGFIP I+ I  L+P +RQTL 
Sbjct: 143 ADVLIATPGRLLDHFERGKLLMTAVEVLVIDEADRMLDMGFIPDIERICKLLPVSRQTLF 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+ +++E FLQNP R+EV  P+S A T+    VAT     +K   L+++++ Q
Sbjct: 203 FSATMPPEITRLTEQFLQNPVRVEVAKPASAALTVTQRLVATKKDDFEKRDTLRRVIRDQ 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
             + N IIFCN+K++V  L  SLE+ GFS  A+HG++DQRSR  +L  F++
Sbjct: 263 TELTNAIIFCNRKRDVATLFRSLERHGFSAGALHGDMDQRSRTAMLQGFRD 313


>gi|152999406|ref|YP_001365087.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151364024|gb|ABS07024.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 525

 Score =  347 bits (891), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 180/370 (48%), Positives = 246/370 (66%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ + IP VLQ  DV   AQTGTGKTA F LPML
Sbjct: 12  MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 71

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG RA+    R L+L PTRELAAQVA++ E YGKN  L  A++ GG+P   Q  KL
Sbjct: 72  ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 131

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 132 RHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 191

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++++++  + NP  I V TP + A T    +V    + S+K ALL QL+
Sbjct: 192 NLMFSATFSDEIRELAKGLVNNPVEISV-TPRNAAATTVKQWVCPVDK-SQKSALLIQLI 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+  +  ++F   K     L  SLE  G    AIHGN  Q +R K L++FK G  +++
Sbjct: 250 K-QNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVL 308

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+IK ++ 
Sbjct: 309 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLND 368

Query: 360 IEKLIEKKVD 369
           IE+LI + +D
Sbjct: 369 IERLINRVLD 378


>gi|160874026|ref|YP_001553342.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|160859548|gb|ABX48082.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
          Length = 525

 Score =  347 bits (891), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 180/370 (48%), Positives = 246/370 (66%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ + IP VLQ  DV   AQTGTGKTA F LPML
Sbjct: 12  MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 71

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG RA+    R L+L PTRELAAQVA++ E YGKN  L  A++ GG+P   Q  KL
Sbjct: 72  ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 131

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 132 RHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 191

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++++++  + NP  I V TP + A T    +V    + S+K ALL QL+
Sbjct: 192 NLMFSATFSDEIRELAKGLVNNPVEISV-TPRNAAATTVKQWVCPVDK-SQKSALLIQLI 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+  +  ++F   K     L  SLE  G    AIHGN  Q +R K L++FK G  +++
Sbjct: 250 K-QNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVL 308

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+IK ++ 
Sbjct: 309 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLND 368

Query: 360 IEKLIEKKVD 369
           IE+LI + +D
Sbjct: 369 IERLINRVLD 378


>gi|217972086|ref|YP_002356837.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217497221|gb|ACK45414.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 515

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 180/370 (48%), Positives = 246/370 (66%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ + IP VLQ  DV   AQTGTGKTA F LPML
Sbjct: 1   MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG RA+    R L+L PTRELAAQVA++ E YGKN  L  A++ GG+P   Q  KL
Sbjct: 61  ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 RHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++++++  + NP  I V TP + A T    +V    + S+K ALL QL+
Sbjct: 181 NLMFSATFSDEIRELAKGLVNNPVEISV-TPRNAAATTVKQWVCPVDK-SQKSALLIQLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+  +  ++F   K     L  SLE  G    AIHGN  Q +R K L++FK G  +++
Sbjct: 239 K-QNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+IK ++ 
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLND 357

Query: 360 IEKLIEKKVD 369
           IE+LI + +D
Sbjct: 358 IERLINRVLD 367


>gi|126175663|ref|YP_001051812.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125998868|gb|ABN62943.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 526

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 180/370 (48%), Positives = 246/370 (66%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ + IP VLQ  DV   AQTGTGKTA F LPML
Sbjct: 12  MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 71

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG RA+    R L+L PTRELAAQVA++ E YGKN  L  A++ GG+P   Q  KL
Sbjct: 72  ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 131

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 132 RHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 191

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++++++  + NP  I V TP + A T    +V    + S+K ALL QL+
Sbjct: 192 NLMFSATFSDEIRELAKGLVNNPVEISV-TPRNAAATTVKQWVCPVDK-SQKSALLIQLI 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+  +  ++F   K     L  SLE  G    AIHGN  Q +R K L++FK G  +++
Sbjct: 250 K-QNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVL 308

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+IK ++ 
Sbjct: 309 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLND 368

Query: 360 IEKLIEKKVD 369
           IE+LI + +D
Sbjct: 369 IERLINRVLD 378


>gi|304411082|ref|ZP_07392698.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307301795|ref|ZP_07581553.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304350617|gb|EFM15019.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306913833|gb|EFN44254.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 515

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 180/370 (48%), Positives = 246/370 (66%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ + IP VLQ  DV   AQTGTGKTA F LPML
Sbjct: 1   MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG RA+    R L+L PTRELAAQVA++ E YGKN  L  A++ GG+P   Q  KL
Sbjct: 61  ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 RHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++++++  + NP  I V TP + A T    +V    + S+K ALL QL+
Sbjct: 181 NLMFSATFSDEIRELAKGLVNNPVEISV-TPRNAAATTVKQWVCPVDK-SQKSALLIQLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+  +  ++F   K     L  SLE  G    AIHGN  Q +R K L++FK G  +++
Sbjct: 239 K-QNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+IK ++ 
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLND 357

Query: 360 IEKLIEKKVD 369
           IE+LI + +D
Sbjct: 358 IERLINRVLD 367


>gi|315266257|gb|ADT93110.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 514

 Score =  347 bits (889), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 180/370 (48%), Positives = 246/370 (66%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ + IP VLQ  DV   AQTGTGKTA F LPML
Sbjct: 1   MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG RA+    R L+L PTRELAAQVA++ E YGKN  L  A++ GG+P   Q  KL
Sbjct: 61  ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 RHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++++++  + NP  I V TP + A T    +V    + S+K ALL QL+
Sbjct: 181 NLMFSATFSDEIRELAKGLVNNPVEISV-TPRNAAATTVKQWVCPVDK-SQKSALLIQLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+  +  ++F   K     L  SLE  G    AIHGN  Q +R K L++FK G  +++
Sbjct: 239 K-QNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+IK ++ 
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLND 357

Query: 360 IEKLIEKKVD 369
           IE+LI + +D
Sbjct: 358 IERLINRVLD 367


>gi|85711377|ref|ZP_01042436.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
 gi|85694878|gb|EAQ32817.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
          Length = 423

 Score =  347 bits (889), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 186/429 (43%), Positives = 272/429 (63%), Gaps = 17/429 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL P+++ A+   GY +PTPIQ + IP V+  +DV   AQTGTGKTA F LP+L
Sbjct: 1   MTFSELGLCPEILNALTRQGYTEPTPIQAQAIPAVMAGNDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L+   RA+    R LIL PTRELAAQV ++   YGK+  L+ A++ GG+    Q  KL
Sbjct: 61  EMLKGNERAKANTARVLILTPTRELAAQVGESVANYGKDLPLSYAVVFGGVKINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD + +  +    +E LV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 RKGVDILVATPGRLLDLYQQNAIRFPQLETLVLDEADRMLDMGFIHDIKKIIKLLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++K++++ + NP  I V  P++TAE IE    A  A+ + K  +L Q+L
Sbjct: 181 NLMFSATFSDEIRKLAKSLVNNPVEISVAAPNATAERIEQTLYA--AEKTHKPRMLMQIL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++ + +   I+F   K     L   L+K GF   AIHGN  Q +R K LS+FK G +Q++
Sbjct: 239 RNLN-LPQVIVFSRTKHGANRLVKQLDKDGFLAAAIHGNKSQGARTKALSDFKSGAVQVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + +V N+D+P  AE+Y+HRIGRTGRAG+ G A +LV  E+ + + A
Sbjct: 298 VATDIAARGLDIEKLPYVINYDLPQVAEDYVHRIGRTGRAGQVGHAISLVMDEEFRTLKA 357

Query: 360 IEKLIEKKVD--WLNG----DLSSLNPPLEKIDIAQHNHARKNNPIP---QKSTGFDRRK 410
           IEKLI + ++   L+G    +L+   PP ++    +    RK+   P   QKS G  + +
Sbjct: 358 IEKLIGQPIERRTLDGFDEVELTGKTPPPKR----EQRPPRKSRGAPSDKQKSPGRAKHR 413

Query: 411 KNYSSQKSH 419
           +  S++ S 
Sbjct: 414 RQGSNKSSQ 422


>gi|146294196|ref|YP_001184620.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145565886|gb|ABP76821.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 550

 Score =  345 bits (885), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 177/370 (47%), Positives = 246/370 (66%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ + IP VLQ  DV   AQTGTGKTA F LP+L
Sbjct: 12  MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLL 71

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG +A+    RTL+L PTRELAAQVA++ E YGK   L  A++ GG+P   Q  KL
Sbjct: 72  ELLSKGQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKL 131

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D +N+  +  N +EILV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 132 RHGVDVLVATPGRLMDLYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 191

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++++++  + NP  I V TP + A T    +V    +  +K ALL QL+
Sbjct: 192 NLMFSATFSDEIRELAKGLVNNPVEISV-TPRNAAATTVKQWVCPVDK-GQKAALLTQLI 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  +  ++F   K     L  +LE+ G    AIHGN  Q +R K L++FK G ++++
Sbjct: 250 KQHD-WQQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVL 308

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+IK ++ 
Sbjct: 309 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLND 368

Query: 360 IEKLIEKKVD 369
           IE+LI + +D
Sbjct: 369 IERLINRILD 378


>gi|332525460|ref|ZP_08401618.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus
           JA2]
 gi|332108727|gb|EGJ09951.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus
           JA2]
          Length = 483

 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 178/372 (47%), Positives = 244/372 (65%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L PK++ AV DAGY   TPIQ K IP+VL   DV G AQTGTGKTA+F +P+L  
Sbjct: 19  FDTLALDPKLLRAVADAGYRAMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAAFTIPLLQK 78

Query: 63  LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + +      +  R P R L+L PTRELA QVA N + Y K+  L  A++ GG+  + Q  
Sbjct: 79  MLRHENTSMSPARHPVRALVLAPTRELADQVAANVKTYAKHTRLRSAVVFGGVDMKPQTA 138

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L+ G +VLI TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P T
Sbjct: 139 ELKAGVEVLIATPGRLLDHIEARNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSFLPKT 198

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E+++++ ++LQ+P  +EV  P++TA T+E  F         K A ++Q
Sbjct: 199 RQTLLFSATFSPEIKRLAGSYLQDPVTVEVARPNATASTVEQRFYGV--GDDDKRATVRQ 256

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+ Q  +   I+F N K     L  S E+ G    A+HG+  Q  R+K L+ FK G + 
Sbjct: 257 ILR-QRELSQAIVFVNSKLGAARLARSFERDGLKTQALHGDKSQDERLKALAAFKAGEVD 315

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+D+AARGLDI D+  VFNFDVP  AE+Y+HRIGRTGRAG  G A TLV ++D + I
Sbjct: 316 LLVATDVAARGLDIADLPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVTRDDTRLI 375

Query: 358 DAIEKLIEKKVD 369
             IEKLI+KK++
Sbjct: 376 GDIEKLIKKKIE 387


>gi|120597666|ref|YP_962240.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120557759|gb|ABM23686.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 550

 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 177/370 (47%), Positives = 246/370 (66%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ + IP VLQ  DV   AQTGTGKTA F LP+L
Sbjct: 12  MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLL 71

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG +A+    RTL+L PTRELAAQVA++ E YGK   L  A++ GG+P   Q  KL
Sbjct: 72  ELLSKGQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKL 131

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D +N+  +  N +EILV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 132 RHGVDVLVATPGRLMDLYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 191

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++++++  + NP  I V TP + A T    +V    +  +K ALL QL+
Sbjct: 192 NLMFSATFSDEIRELAKGLVNNPVEISV-TPRNAAATTVKQWVCPVDK-GQKSALLTQLI 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  +  ++F   K     L  +LE+ G    AIHGN  Q +R K L++FK G ++++
Sbjct: 250 KQHD-WQQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVL 308

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+IK ++ 
Sbjct: 309 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLND 368

Query: 360 IEKLIEKKVD 369
           IE+LI + +D
Sbjct: 369 IERLINRILD 378


>gi|319427540|gb|ADV55614.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 539

 Score =  344 bits (882), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 177/370 (47%), Positives = 246/370 (66%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ + IP VLQ  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG +A+    RTL+L PTRELAAQVA++ E YGK   L  A++ GG+P   Q  KL
Sbjct: 61  ELLSKGQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D +N+  +  N +EILV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 RHGVDVLVATPGRLMDLYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++++++  + NP  I V TP + A T    +V    +  +K ALL QL+
Sbjct: 181 NLMFSATFSDEIRELAKGLVNNPVEISV-TPRNAAATTVKQWVCPVDK-GQKSALLTQLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  +  ++F   K     L  +LE+ G    AIHGN  Q +R K L++FK G ++++
Sbjct: 239 KQHD-WQQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+IK ++ 
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLND 357

Query: 360 IEKLIEKKVD 369
           IE+LI + +D
Sbjct: 358 IERLINRILD 367


>gi|124265824|ref|YP_001019828.1| putative ATP-dependent RNA helicase 2 [Methylibium petroleiphilum
           PM1]
 gi|124258599|gb|ABM93593.1| putative ATP-dependent RNA helicase 2 [Methylibium petroleiphilum
           PM1]
          Length = 494

 Score =  342 bits (878), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 175/372 (47%), Positives = 245/372 (65%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L PK++ AV ++GY+  TPIQ K IPLVL   DV G AQTGTGKTA+F LP+L  
Sbjct: 21  FDTLALDPKLLRAVAESGYLLMTPIQAKAIPLVLAGRDVMGAAQTGTGKTAAFSLPLLQK 80

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + K  +    P     R L+L PTRELA QVA+N + Y K+  L   ++ GGI  + Q  
Sbjct: 81  MLKHESSSTSPARHPVRALVLAPTRELADQVANNVKTYSKHTQLRATVVFGGIDMKPQTA 140

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L+RG +VLI TPGR+LDH       ++ +E +V+DEADRMLD+GF+P +Q I S +P +
Sbjct: 141 ELKRGVEVLIATPGRLLDHIEAKNCSLSQVEYVVLDEADRMLDIGFLPDLQRILSYLPKS 200

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++ ++LQ+P  +E   P++TA T+E  F     +   K   ++Q
Sbjct: 201 RQTLLFSATFSPEIKKLANSYLQDPILVETARPNATASTVEQRFY--RVEDDDKRNAVKQ 258

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+++  +   I+F N K     L  + E+ G    A+HG+  Q  R+K L+ FK G + 
Sbjct: 259 LLRTR-AITQSIVFVNSKLGAARLARAFERDGLRTQALHGDKSQDERLKALAAFKAGEVD 317

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+D+AARGLDI D+  VFNFDVP  AE+Y+HRIGRTGRAG  G A TLV+++D + +
Sbjct: 318 LLVATDVAARGLDIADLPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAITLVSRDDARLV 377

Query: 358 DAIEKLIEKKVD 369
             IEKLI+KK+D
Sbjct: 378 SDIEKLIKKKLD 389


>gi|308050173|ref|YP_003913739.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307632363|gb|ADN76665.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 499

 Score =  342 bits (878), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 177/381 (46%), Positives = 247/381 (64%), Gaps = 6/381 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLSP++  AV D GY +P+PIQ + IP +L   DV   AQTGTGKTA F LPML
Sbjct: 1   MPFASLGLSPELARAVADKGYREPSPIQAQAIPAILAGKDVMAAAQTGTGKTAGFTLPML 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G RAR    R L+L PTRELAAQVA++ + YG+N  L   ++ GG+    Q + L
Sbjct: 61  QNLSRGTRARSNRVRALVLTPTRELAAQVAESVQTYGQNLPLRSVVVFGGVSINPQMQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGADVL+ TPGR+LD F++  +   ++E+LV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RRGADVLVATPGRLLDLFSQNAVKFEDLELLVLDEADRMLDMGFIRDIRKILALLPKRRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E+++++   L  P  ++V+  +STA T+            +K AL+ +L+
Sbjct: 181 NLLFSATFSGEIRELARGLLNQPVEVDVSPRNSTARTVVQRLHPV--DKGRKPALISKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +  +  +IF   K     L   LE+ G    AIHGN  Q +R + L+ FK+GT+Q +
Sbjct: 239 REHNWHQV-LIFTRTKHGANRLAQKLERDGIQAAAIHGNKSQGARTRALAGFKDGTVQAL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+P  AE+Y+HRIGRTGRAG  G+A +LV  E+ K + A
Sbjct: 298 VATDIAARGLDIHQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGQAISLVCAEEFKLLQA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           IEKLI+K ++ +  +L+   P
Sbjct: 358 IEKLIQKPIERV--ELAGFEP 376


>gi|84387538|ref|ZP_00990556.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01]
 gi|84377586|gb|EAP94451.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01]
          Length = 531

 Score =  340 bits (871), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 172/367 (46%), Positives = 239/367 (65%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+   GY KP+PIQ K +P VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG R R    R L+L PTRELAAQV  +  KYG N  LT  ++ GG+    Q +KL
Sbjct: 61  EMLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G+DVL+ TPGR+LD +N+  +  + +EILV+DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 121 RKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +D+++ +++  + NP  I V+  +STA T+E           KK A+L +L+
Sbjct: 181 NLLFSATFSDDIRGLAKGLVNNPVEISVSPANSTAPTVEQSIYPV--DKKKKSAMLAKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  +  ++F   K     L H L++QG S   IHGN  Q +R K L NFK G ++++
Sbjct: 239 KDND-WRQVLVFSKTKHGANKLSHFLDEQGISAAPIHGNKSQGARTKALENFKTGKVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NFD+PN +E+Y+HRIGRTGRAG  GKA +LV  +++  +  
Sbjct: 298 VATDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFG 357

Query: 360 IEKLIEK 366
           IE+LI++
Sbjct: 358 IERLIQQ 364


>gi|82703770|ref|YP_413336.1| DEAD/DEAH box helicase-like [Nitrosospira multiformis ATCC 25196]
 gi|82411835|gb|ABB75944.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
           25196]
          Length = 510

 Score =  339 bits (869), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 178/415 (42%), Positives = 263/415 (63%), Gaps = 15/415 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P+++ A+ D GY  PTPIQ + IP +L+  D+ G AQTGTGKTASF LPML
Sbjct: 1   MSFTELNLTPEILRAIADQGYTDPTPIQTQAIPHILEGRDIMGAAQTGTGKTASFTLPML 60

Query: 61  TILEKGR----ARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +L+ G     +  R P RTLIL PTRELA QV ++ + YGK   L  A + GG+  E Q
Sbjct: 61  NLLQSGANTSASPARHPIRTLILVPTRELAIQVHESVKTYGKYLPLRYAAVYGGVDMEPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L  G ++L+ TPGR+LDH  +  + ++ +EIL++DEADRMLDMGF+P I+ I +L+P
Sbjct: 121 TRELRAGVEILVATPGRLLDHVQQKAINLSKVEILILDEADRMLDMGFLPDIKRILALLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ+L+FSAT +DE++K++   L+ P  +EV   ++  E I H       +  +K  LL
Sbjct: 181 SQRQSLMFSATFSDEIKKLAGKLLREPVLVEVARRNTITELITHVVHPVVRE--RKRELL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++SQD ++  ++F   K     L H LE+   S  AIHG+  Q  R + L+ FK+G 
Sbjct: 239 AHLIKSQD-LQQVLVFARTKHGASRLAHQLERDHISATAIHGDKTQTQRTEALAKFKQGV 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGLDI ++ HV NF++P   E+Y+HRIGRTGRAG  G A +LV +++ +
Sbjct: 298 VRVLVATDVAARGLDIEELPHVVNFELPTNPEDYVHRIGRTGRAGTKGDAVSLVCEDEAE 357

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLE-KIDIAQHNHARKNNPIPQKSTGFDRR 409
            +  IEKL++ K++      S + P  E +  +AQ   A  +  I QKS G   R
Sbjct: 358 LLKGIEKLLKFKLE------SKVVPGFEPETPVAQGEAAISHGRIDQKSAGSQPR 406


>gi|78485124|ref|YP_391049.1| DEAD/DEAH box helicase-like [Thiomicrospira crunogena XCL-2]
 gi|78363410|gb|ABB41375.1| ATP-dependent RNA helicase [Thiomicrospira crunogena XCL-2]
          Length = 445

 Score =  337 bits (865), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 173/367 (47%), Positives = 237/367 (64%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  ++ AV   GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLSKPILDAVTQQGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L KG+ A     R LIL PTRELAAQV+D+ E YGK  +L   ++ GG+    Q  +L
Sbjct: 61  ERLSKGKPAGPNQARALILTPTRELAAQVSDSVETYGKQLSLKSTVVFGGVKINPQMMRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD FN+  +  + +EILV+DEADRMLDMGFI  I+ I   +P  RQ
Sbjct: 121 RKGVDILVATPGRLLDLFNQNAIKFDQLEILVLDEADRMLDMGFIHDIKRILKALPKNRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT ++E++++++  + NP  I V   ++TA T+            +K ALL +L+
Sbjct: 181 NLLFSATFSNEIRQLAKGLVNNPVEISVTPRNTTATTVTQWIYPV--DKGRKAALLTKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D     +IF   K     L   LE +G    AIHGN  Q +R K L++FK+GT+Q +
Sbjct: 239 KEND-WSQVLIFSRTKHGANRLTKQLEGKGIKAAAIHGNKSQGARTKALASFKDGTVQAL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV NFD+PN AE+Y+HRIGRTGRAG  G+A +LV+ +++K +  
Sbjct: 298 VATDIAARGIDIDQLPHVVNFDLPNVAEDYVHRIGRTGRAGAVGEAVSLVSADEVKELAG 357

Query: 360 IEKLIEK 366
           IE LI+K
Sbjct: 358 IENLIQK 364


>gi|171057308|ref|YP_001789657.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170774753|gb|ACB32892.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 479

 Score =  337 bits (863), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 173/372 (46%), Positives = 244/372 (65%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L PK++ A++DAGY+  TPIQ K IP+VL   DV G AQTGTGKTA+F LP+L  
Sbjct: 17  FDSLPLDPKLLRAIVDAGYLTMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAAFSLPLLQK 76

Query: 63  L---EKGRAR-VRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +   E   A   R P R L+L PTRELA QVA+N + Y ++  L V  + GGI    Q  
Sbjct: 77  MLRHENASASPARHPVRALVLAPTRELADQVANNVKTYARHSQLRVTCVFGGIDMAPQTA 136

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L+RG +VLI TPGR+LDH       +N +E +V+DEADRMLD+GF+P +Q I S +P T
Sbjct: 137 ELKRGVEVLIATPGRLLDHIQAKNCQLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKT 196

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K+++++LQ+P  +EV  P++TA  +E  F +      ++  L   
Sbjct: 197 RQTLLFSATFSPEIKKLAQSYLQDPLLVEVARPNATATNVEQRFYSVTDDDKRRTVL--H 254

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+ + ++   I+F N K     L  S E+ G    A+HG+  Q  R+K L  FK G + 
Sbjct: 255 ILRER-SITQAIVFVNSKLGAARLARSFERDGLRTSALHGDKSQDERLKALDAFKRGEVD 313

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI D+  VFNFD+P  AE+Y+HRIGRTGRAG  G A +LV+ +D + +
Sbjct: 314 VLVATDVAARGLDIADLPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSLVSHDDNRLV 373

Query: 358 DAIEKLIEKKVD 369
             IE+LI+KK++
Sbjct: 374 SDIEQLIKKKIE 385


>gi|225155423|ref|ZP_03723915.1| Superfamily II DNA and RNA helicase-like protein [Opitutaceae
           bacterium TAV2]
 gi|224803879|gb|EEG22110.1| Superfamily II DNA and RNA helicase-like protein [Opitutaceae
           bacterium TAV2]
          Length = 536

 Score =  337 bits (863), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 176/381 (46%), Positives = 242/381 (63%), Gaps = 11/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL+  +  AV + GY +PTPIQ + +P VL   DV G AQTGTGKTA+F LP   I
Sbjct: 135 FSKLGLNDALAFAVTEMGYTEPTPIQAQAVPAVLAGRDVTGSAQTGTGKTAAFALP---I 191

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  A  R  R L+LEPTRELA QV + F+KY K  +LT  ++ GG+ +  Q + L+RG
Sbjct: 192 LHKLGAHERRLRCLVLEPTRELALQVEEAFQKYSKYTDLTATVVYGGVGYGKQREDLQRG 251

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV+  TPGR+LDH  +G + + ++EILV+DE DRMLDMGF+P ++ I    P  RQTL 
Sbjct: 252 VDVVAATPGRLLDHIEQGTMTLADVEILVLDEVDRMLDMGFLPDVKRIVQQCPQARQTLF 311

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  EL +++   L++P  I++    S AETI H F    A  S+K  LL  LL S+
Sbjct: 312 FSATLPPELAQLASWALRDPVEIKIGQRRSPAETISHAFYPVVA--SQKFDLLIDLL-SR 368

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K+ IIF   K     + H L+++G +V  IH + +QR R++ L  FK G  +++VA+
Sbjct: 369 TEFKSVIIFTRTKMGADRIAHRLQREGHTVGVIHSDRNQRERVEALEGFKSGKFEVLVAT 428

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV N+DVP   E+Y+HRIGRTGRA   G AFTLV ++D++   +IE+
Sbjct: 429 DIAARGLDIAGVSHVINYDVPENPEDYVHRIGRTGRANASGDAFTLVTEDDVRDARSIER 488

Query: 363 LI-----EKKVDWLNGDLSSL 378
            I      KK+D  +   S+L
Sbjct: 489 YINAEIERKKIDGFDYIYSAL 509


>gi|212633675|ref|YP_002310200.1| DEAD box helicase [Shewanella piezotolerans WP3]
 gi|212555159|gb|ACJ27613.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 482

 Score =  337 bits (863), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 174/413 (42%), Positives = 263/413 (63%), Gaps = 4/413 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS +++ AV + GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG +A  +  R L+L PTRELAAQV ++ E YGKN  L  A++ GG+    Q  KL
Sbjct: 61  ELLSKGNKAPAKQVRALVLTPTRELAAQVGESVEIYGKNLPLKSAVIFGGVGIGPQISKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD +N+  +  + +E+LV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 SRGVDILVATPGRLLDLYNQRAVNFSQLEVLVLDEADRMLDMGFIHDIKKILAILPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +D+++K+++  + NP  I V   ++TA T++           +K ++L +L+
Sbjct: 181 NLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATANTVKQWICPV--DKGQKASVLVKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  +  ++F   K     L  +L+ +G +  AIHGN  Q +R K L+ FK G ++++
Sbjct: 239 KQHD-WQQVLVFSRTKHGANRLAKNLDAKGITAAAIHGNKSQGARTKALAEFKSGDVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+IK +  
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSDEEIKLLRD 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           IE LI++ ++    +    +  L + D+ + +H +   P    S G ++++ N
Sbjct: 358 IELLIKQNLERRVIEGFEPSHKLPETDLTRKSHGQNKGPRNSNSRGSNQKRSN 410


>gi|170725067|ref|YP_001759093.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169810414|gb|ACA84998.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 494

 Score =  336 bits (862), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 168/369 (45%), Positives = 243/369 (65%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV   GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTSLGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +G RA  +  R L+L PTRELAAQVA++ E YGKN  L  A++ GG+    Q  KL
Sbjct: 61  ELLSRGKRAPAKQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVGIGPQISKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD +N+G +    +E+LV+DEADRMLDMGFI  I+ I  ++P  RQ
Sbjct: 121 GKGVDILVATPGRLLDLYNQGAVSFKQLEVLVLDEADRMLDMGFIHDIKKILKILPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +D+++ +++  + NP  I V   ++TA+T+E  ++    Q  K  AL+   L
Sbjct: 181 NLMFSATFSDDIRNLAKGLVNNPVEISVTPRNATAKTVEQ-YIYPVDQKQKTAALIH--L 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  K  ++F   K     +  +LE  G +  AIHGN  Q +R K L+NFK G ++++
Sbjct: 238 VKQNEWKQVLVFSRTKHGANRIAKNLEASGLTAAAIHGNKSQGARTKALANFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + +V NFD+PN  E+Y+HRIGRTGRAG +G+A +LV+ ++ K +  
Sbjct: 298 VATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGANGQAVSLVSGDESKLLRD 357

Query: 360 IEKLIEKKV 368
           IE+LI++ +
Sbjct: 358 IERLIKQNI 366


>gi|157376983|ref|YP_001475583.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157319357|gb|ABV38455.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 513

 Score =  336 bits (862), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 170/369 (46%), Positives = 244/369 (66%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV   GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 23  MSFTSLGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 82

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +G RA+ +  R L+L PTRELAAQVA++ E YGKN  L  A++ GG+    Q  KL
Sbjct: 83  ELLTRGNRAQAKQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVVFGGVGIGPQISKL 142

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD FN+  L  N +E+L++DEADRMLDMGFI  I+ I  ++P  RQ
Sbjct: 143 GKGVDILVATPGRLLDLFNQRALNFNQLEVLILDEADRMLDMGFIHDIKKILKVLPAKRQ 202

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +D+++K+++  + NP  I V   ++TA+T+E  ++    Q  K  AL+   L
Sbjct: 203 NLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATAKTVEQ-YIYQVDQKQKTAALIH--L 259

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  K  ++F   K     +  +LE    +  AIHGN  Q +R K L+NFK G ++++
Sbjct: 260 IKQNDWKQVLVFSRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKALANFKSGEVRVL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + +V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ ++ K +  
Sbjct: 320 VATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGADGQAVSLVSGDESKLLRD 379

Query: 360 IEKLIEKKV 368
           IE+LI++K+
Sbjct: 380 IERLIKQKI 388


>gi|307729080|ref|YP_003906304.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307583615|gb|ADN57013.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
          Length = 487

 Score =  335 bits (858), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 175/372 (47%), Positives = 241/372 (64%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+P ++ AV ++GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N + Y K+  L  A++ GG+    Q++
Sbjct: 73  LLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSE 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 QLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   +STA  +    V   A+  K  A++Q 
Sbjct: 193 RQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQ-IVYEVAEGDKTGAVVQ- 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  + ++K  I+FCN K     L  SLE+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 -LIRERSLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKKVD 369
             IEKLI++ +D
Sbjct: 370 ADIEKLIKRPLD 381


>gi|37676819|ref|NP_937215.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|37201363|dbj|BAC97185.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 509

 Score =  335 bits (858), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 169/367 (46%), Positives = 241/367 (65%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP +L+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIQEKGYDTPSPIQLQAIPAILEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L KG R R    R LIL PTRELAAQV +N   Y ++ +L  A++ GG+    Q  +L
Sbjct: 61  ERLAKGPRVRANHIRALILTPTRELAAQVQENVFMYSRHLDLNSAVVFGGVKINPQMLRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +++  +  + +E+LV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLYSQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++++++  + NP  I VN  +STA T+E C     A   KK A+L +L+
Sbjct: 181 NLLFSATFSDEIRELAKGLVNNPIEISVNPANSTARTVEQCIYP--ADVKKKPAMLAKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  +  ++F   K     L   L  QG +  AIHGN  Q +R K L++FK G ++++
Sbjct: 239 KDGD-WRQVLVFTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGDVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV   +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGETGKAISLVCALEAPELFA 357

Query: 360 IEKLIEK 366
           IE+LI++
Sbjct: 358 IERLIQE 364


>gi|90577494|ref|ZP_01233305.1| putative ATP-dependent RNA helicase RhlE [Vibrio angustum S14]
 gi|90440580|gb|EAS65760.1| putative ATP-dependent RNA helicase RhlE [Vibrio angustum S14]
          Length = 497

 Score =  334 bits (857), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 174/370 (47%), Positives = 241/370 (65%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  ++ AV   GY KP+PIQ + IP +L   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLSAPILEAVAKQGYEKPSPIQEQAIPAILAGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  GR AR    R L+L PTRELAAQV ++   YGKN  L+ A++ GG+    Q  ++
Sbjct: 61  ERLANGRPARSNHVRALVLTPTRELAAQVGESVATYGKNLRLSSAVVFGGVKVNPQMLRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D  ++  +   ++EILV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLHSQNAVKFRDVEILVLDEADRMLDMGFIRDIRKILALLPKERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++++++  + NP  I+VN  + TA T++           KK  LL +LL
Sbjct: 181 NLLFSATFSDEIRELAKGLVNNPVEIDVNPRNQTARTVKQWICPV--DQKKKPNLLTKLL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  ++F   K     L   LE +G S  AIHGN  Q +R K L+NFK G ++++
Sbjct: 239 NERN-WKQVLVFTKTKHGANKLATHLESRGVSAAAIHGNKSQGARTKALANFKSGDVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+P+ AE+Y+HRIGRTGRAG  G+A +LV+ E+ K + A
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPHVAEDYVHRIGRTGRAGCVGEAISLVSAEEAKDLAA 357

Query: 360 IEKLIEKKVD 369
           IE+L ++  D
Sbjct: 358 IERLTQQVFD 367


>gi|291614701|ref|YP_003524858.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291584813|gb|ADE12471.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 450

 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 179/434 (41%), Positives = 269/434 (61%), Gaps = 10/434 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL L+P ++ A+ +AGYV PTPIQ + IPL L+ HD+   AQTGTGKTA+F LPML
Sbjct: 4   VSFVDLKLAPPILKALTEAGYVTPTPIQAQAIPLALEGHDLMAGAQTGTGKTAAFALPML 63

Query: 61  TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L    +    P     R LIL PTRELA QV ++ + Y K+ NL   ++ GG+  + Q
Sbjct: 64  QKLLPHASASTSPAKHPVRALILVPTRELAVQVEESVKAYAKHTNLRSLVVYGGVDIKTQ 123

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G ++L+ TPGR+LDH  +  +L+N +++LV+DEADRMLDMGF+P ++ I +L+P
Sbjct: 124 TPHLKTGVEILVATPGRLLDHIEQKTVLLNQVQMLVLDEADRMLDMGFMPALKRILALLP 183

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ+L+FSAT ++E++K+SE+F+  P  IEV   +++AE I         + S K  LL
Sbjct: 184 RQRQSLMFSATFSNEIKKLSEDFMNYPTLIEVARSNASAENITQKVY--LVEQSGKHQLL 241

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            QLL+  D  K  I+F   K     L   L+++G S  AIHG+  Q  RM+ L  FK+G 
Sbjct: 242 AQLLRGDDA-KQVIVFTKTKLTASRLAKQLQREGVSADAIHGDKSQLERMQALDAFKQGR 300

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + +++A+D+AARGLDI  +  V N+++P+ AE+Y+HRIGRTGRAG  G A +LV+ E+ K
Sbjct: 301 VAVLIATDVAARGLDIDSLPMVINYEIPHAAEDYVHRIGRTGRAGASGTAISLVSPEEEK 360

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           ++  IEKLI+K++     D+ + +    + +  + N    + P P+K +      K Y  
Sbjct: 361 YLLEIEKLIKKEIQKERVDMPAPDARPHRAEPRERNR-EYHAPAPKKPSHDPWFDKPYVP 419

Query: 416 QKS-HIPLKESEKI 428
             S   P+K+ E +
Sbjct: 420 NISAEAPVKKPEPV 433


>gi|27367036|ref|NP_762563.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus CMCP6]
 gi|27358604|gb|AAO07553.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus CMCP6]
          Length = 509

 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 168/367 (45%), Positives = 241/367 (65%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP +L+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIQEKGYDTPSPIQLQAIPAILEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L KG R R    R LIL PTRELAAQV +N   Y ++ +L  A++ GG+    Q  +L
Sbjct: 61  ERLAKGPRVRANHIRALILTPTRELAAQVQENVFMYSRHLDLNSAVVFGGVKINPQMLRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +++  +  + +E+L++DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLYSQNAVKFDQLEVLILDEADRMLDMGFIRDIRKILALLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++++++  + NP  I VN  +STA T+E C     A   KK A+L +L+
Sbjct: 181 NLLFSATFSDEIRELAKGLVNNPIEISVNPANSTARTVEQCIYP--ADVKKKPAMLAKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  +  ++F   K     L   L  QG +  AIHGN  Q +R K L++FK G ++++
Sbjct: 239 KDGD-WQQVLVFTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV   +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGETGKAISLVCALEAPELFA 357

Query: 360 IEKLIEK 366
           IE+LI++
Sbjct: 358 IERLIQE 364


>gi|87119807|ref|ZP_01075704.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
 gi|86165283|gb|EAQ66551.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
          Length = 450

 Score =  333 bits (855), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 162/369 (43%), Positives = 244/369 (66%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+LGLS  ++ A+ ++GY KP+PIQ + IP +L+ +D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFAELGLSKPILTAIKESGYSKPSPIQQQAIPAILESNDIMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            IL +G +A     R L+L PTRELAAQVAD+   YG++ NL   ++ GG+    Q  +L
Sbjct: 61  EILSRGAKANANQVRALVLTPTRELAAQVADSVATYGQHLNLRSDVVFGGVKINPQMMRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD +N+  +  + +E+LV+DEADRMLDMGFI  I+ + +L+P  RQ
Sbjct: 121 RKGTDILVATPGRLLDLYNQKAIRFDQLEVLVLDEADRMLDMGFIHDIKKVLALLPKRRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +D+++++++  + NP  + V+  ++   T++H          +K ALL  L+
Sbjct: 181 NLLFSATFSDDIRQLAKGLMNNPVEVSVSPANAATPTVKHLL--HPVDKKEKTALLIHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +QD  +  ++F   K     +   L   G S  AIHGN  Q +R K L++FK   I+++
Sbjct: 239 VTQD-WQQALVFSRTKHGANKIVQKLNDAGISAAAIHGNKSQGARTKALADFKNSDIRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V NFD+PN AE+Y+HRIGRTGRAG  GKA +LV+ +++  +  
Sbjct: 298 VATDIAARGIDIEQLPQVVNFDLPNVAEDYVHRIGRTGRAGATGKAVSLVSADEVDQLKD 357

Query: 360 IEKLIEKKV 368
           IE+LI+K +
Sbjct: 358 IERLIKKLI 366


>gi|320158915|ref|YP_004191293.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus MO6-24/O]
 gi|319934227|gb|ADV89090.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus MO6-24/O]
          Length = 509

 Score =  333 bits (855), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 168/367 (45%), Positives = 240/367 (65%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP +L+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIQEKGYDTPSPIQLQAIPAILEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L KG R R    R LIL PTRELAAQV +N   Y ++ +L  A++ GG+    Q  +L
Sbjct: 61  ERLAKGPRVRANHIRALILTPTRELAAQVQENVFMYSRHLDLNSAVVFGGVKINPQMLRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +++  +  + +E+L++DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLYSQNAVKFDQLEVLILDEADRMLDMGFIRDIRKILALLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++++++  + NP  I VN  +STA T+E C     A   KK A+L +L+
Sbjct: 181 NLLFSATFSDEIRELAKGLVNNPIEISVNPANSTARTVEQCIYP--ADVKKKPAMLAKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D  +  ++F   K     L   L  QG +  AIHGN  Q +R K L++FK G ++++
Sbjct: 239 NDGD-WRQVLVFTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV   +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGETGKAISLVCALEAPELFA 357

Query: 360 IEKLIEK 366
           IE+LI++
Sbjct: 358 IERLIQE 364


>gi|326793753|ref|YP_004311573.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326544517|gb|ADZ89737.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 425

 Score =  333 bits (855), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 172/376 (45%), Positives = 240/376 (63%), Gaps = 6/376 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ A+   GY +P+PIQ   IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSSLGLSAPILDAIKSQGYSEPSPIQAMAIPAVLEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG +AR    R L+L PTRELAAQV +N   Y +N  L   ++ GG+    Q  KL
Sbjct: 61  ELLSKGEKARSNNVRALVLTPTRELAAQVHENAAAYSQNLPLRAEVVFGGVKINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DVL+ TPGR+LD F++  +    +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 RRGVDVLVATPGRLLDLFSQNAISFKQLEILVLDEADRMLDMGFIHDIKRILKLLPKERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT +D+++++++N +++   + V  P++T E I    +      SKK A L+ L+
Sbjct: 181 TLLFSATFSDDIRELAQNVVKDAVEVSVTPPNTTVEVIRQSLIPV--DKSKKSAALKFLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           QS+D +   ++F   K     L    +K G    AIHGN  Q +R K L+ FK G I+++
Sbjct: 239 QSRD-LSQVLVFSRTKHGANRLATLFQKAGIEAAAIHGNKSQGARTKALAGFKSGEIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV NFD+PN   +Y+HRIGRTGRAG  G+A +LV++++   +  
Sbjct: 298 VATDIAARGIDIDQLPHVVNFDLPNVPADYVHRIGRTGRAGATGEAISLVSEDEADQLSD 357

Query: 360 IEKLIEKKV--DWLNG 373
           IE LI K +  D+L G
Sbjct: 358 IENLIRKPIPRDYLEG 373


>gi|149908418|ref|ZP_01897081.1| putative ATP-dependent RNA helicase RhlE [Moritella sp. PE36]
 gi|149808581|gb|EDM68516.1| putative ATP-dependent RNA helicase RhlE [Moritella sp. PE36]
          Length = 449

 Score =  333 bits (855), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 168/370 (45%), Positives = 239/370 (64%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGLS  ++ AV + GY  P+ IQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTDLGLSAPILKAVAEKGYDTPSAIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            IL +G R R    RTLIL PTRELAAQ+A+N E Y K+  LT  ++ GG+    Q  +L
Sbjct: 61  EILSQGPRPRANQARTLILTPTRELAAQIAENIEVYSKHLRLTSTVVFGGVKINPQMTRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD +N+  +  + +EILV+DEADRMLDMGF+  I+ I +++P  RQ
Sbjct: 121 RRGVDILVATPGRLLDLYNQNAIRFHQLEILVLDEADRMLDMGFLRDIRKILAVLPQKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +D++++++   + +P  I V   ++ A+++E      +    KK ALL   L
Sbjct: 181 NLLFSATFSDDIRQLARGLINDPVEISVTPRNAAAKSVEQWM---HPVDKKKKALLLTHL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  ++F   K     L   LE+QG +  AIHGN  Q +R K L+NFK G ++ +
Sbjct: 238 IKENDWKQVLVFTKTKHGANKLTKHLEEQGINAAAIHGNKSQSARTKALANFKSGEVRAL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI  +  V NFD+PN  E+Y+HRIGRTGRAG  G A +LV  +++K + A
Sbjct: 298 IATDIAARGIDIVQLPQVVNFDLPNVPEDYVHRIGRTGRAGSEGTAISLVCHDEMKELVA 357

Query: 360 IEKLIEKKVD 369
           IE+L +K ++
Sbjct: 358 IEQLTQKHLE 367


>gi|148975750|ref|ZP_01812581.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3]
 gi|145964823|gb|EDK30075.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3]
          Length = 551

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 168/367 (45%), Positives = 239/367 (65%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+   GY KP+PIQ K +P VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG R R    R L+L PTRELAAQV  +  KYG N  LT +++ GG+    Q +KL
Sbjct: 61  ELLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGLNLPLTSSVVFGGVKINPQMQKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G+DVL+ TPGR+LD +N+  +  + +EILV+DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 121 RKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +D+++ +++  + NP  I V+  +STA+T+E           KK  +L +L+
Sbjct: 181 NLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAKTVEQSIYPV--DKKKKSPMLAKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  +  ++F   K     L   L++QG +   IHGN  Q +R K L NFK G ++++
Sbjct: 239 KDND-WRQVLVFSKTKHGANKLARFLDEQGITAAPIHGNKSQGARTKALENFKTGKVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NFD+P+ +E+Y+HRIGRTGRAG  GKA +LV  +++  +  
Sbjct: 298 VATDIAARGIDIPQLPQVVNFDLPHVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFG 357

Query: 360 IEKLIEK 366
           IE+LI++
Sbjct: 358 IERLIQQ 364


>gi|163750900|ref|ZP_02158133.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161329324|gb|EDQ00321.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 492

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 167/369 (45%), Positives = 244/369 (66%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  PTPIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 14  MSFTSLGLSAPILKAVANKGYETPTPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 73

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +G RA+ +  R L+L PTRELAAQVA++ + YGK   L  A++ GG+    Q  KL
Sbjct: 74  ELLSRGNRAQAKKVRALVLTPTRELAAQVAESVDTYGKYLPLKSAVVFGGVGIGPQISKL 133

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD +N+G +  N +E+LV+DEADRMLDMGFI  I+ I   +P  RQ
Sbjct: 134 GKGVDILVATPGRLLDLYNQGAVNFNQLEVLVLDEADRMLDMGFIHDIKKILRALPAKRQ 193

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +D+++K+++  + NP  I V   ++TA+++E  ++    Q  K  AL+   L
Sbjct: 194 NLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATAKSVEQ-YIYMVDQKQKTAALIH--L 250

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  +  ++F   K     +  +LE +  +  AIHGN  Q +R K L+NFK G ++++
Sbjct: 251 IKQNDWQQVLVFSRTKHGANRIAKNLEAKDITAAAIHGNKSQGARTKALANFKSGLVRVL 310

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + +V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ ++ K +  
Sbjct: 311 VATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSADESKLLRD 370

Query: 360 IEKLIEKKV 368
           IE+LI+K +
Sbjct: 371 IERLIKKNI 379


>gi|127511538|ref|YP_001092735.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126636833|gb|ABO22476.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 491

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 170/367 (46%), Positives = 238/367 (64%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV D GY  P+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTSLGLSAPILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +G RAR +  R L+L PTRELAAQ+A++   YG++  L  A++ GG+    Q  +L
Sbjct: 61  ELLSQGPRARSKQVRALVLTPTRELAAQIAESVTTYGQHLPLRSAVVFGGVGISPQISQL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG D+L+ TPGR+LD + +  +  + +E LV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 KRGVDILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAILPPKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++ +++  + NP  I V   +STA T++          +KK A L +L+
Sbjct: 181 NLMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPV--DKNKKSAALVKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q  D  +  ++F   K     L   LE +G +  AIHGN  Q +R K L+NFK G ++++
Sbjct: 239 QQGD-WQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  GKA +LV+ E+ K +  
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKLLAD 357

Query: 360 IEKLIEK 366
           IE+LI K
Sbjct: 358 IERLIGK 364


>gi|325983359|ref|YP_004295761.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
           AL212]
 gi|325532878|gb|ADZ27599.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
          Length = 457

 Score =  333 bits (853), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 162/371 (43%), Positives = 246/371 (66%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L P ++ A+ +AGY  PTPIQ + +P ++  HDV   AQTGTGKTA+F+LP L
Sbjct: 1   MSFEKLNLHPSILKAIQEAGYTTPTPIQQQAVPELIAGHDVMASAQTGTGKTAAFMLPAL 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
            T+    + R R PR L+L PTRELA QV++  +KYGK    + V  ++GG+P+  QNK 
Sbjct: 61  HTLATPAQIRSRGPRVLVLTPTRELALQVSEAAKKYGKYLPRINVVSILGGMPYPLQNKL 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+L+ TPGR++DH  RG++    +++LV+DEADRMLDMGFI  ++ I +  P TR
Sbjct: 121 LSQPVDILVATPGRLIDHIQRGRIDFKRLQMLVLDEADRMLDMGFIEDVETIAAATPATR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQ 237
           QTLLFSAT+ + + +V+   L+ P+RI+V++P S  + IE      YA   S K  LL  
Sbjct: 181 QTLLFSATLDNAIDRVAAKLLKTPQRIQVSSPKSKLDNIEQRL--HYADDMSHKNRLLDH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+ + T+K  I+F   K++  +L  +L  QG++  A+HG+++QR R + L+  + G ++
Sbjct: 239 VLRDE-TLKQAIVFTATKRDADSLADTLYAQGYAAAALHGDMNQRERNRTLTRLRNGGLR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ D+ HV NFD+P  AE+Y+HRIGRTGRAG  G A +  + +D  H+
Sbjct: 298 VLVATDVAARGIDVADITHVINFDLPKFAEDYVHRIGRTGRAGAAGIAVSFASVKDSMHL 357

Query: 358 DAIEKLIEKKV 368
             IE+   +++
Sbjct: 358 TKIERYTGQRI 368


>gi|157963311|ref|YP_001503345.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157848311|gb|ABV88810.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 511

 Score =  333 bits (853), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 170/370 (45%), Positives = 248/370 (67%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS +++ AV + GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG +A  +  R L+L PTRELAAQV ++ E YGKN  L  A++ GG+    Q  KL
Sbjct: 61  ELLSKGTKAPAKQVRALVLTPTRELAAQVGESVETYGKNLPLKSAVVFGGVGIGPQITKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD +N+  L  + +E+LV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 NRGVDILVATPGRLLDLYNQRALSFSQLEVLVLDEADRMLDMGFIHDIKKILAILPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +D+++++++  + NP  I V   ++TA T++  +V    Q S+K A+L +L+
Sbjct: 181 NLMFSATFSDDIRQLAKGLVNNPVEISVTPRNATANTVQQ-WVCPVDQ-SQKTAVLVKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+  +  ++F   K     L  +LE +  +  AIHGN  Q +R K L++FK G ++++
Sbjct: 239 K-QNDWQQVLVFSRTKHGANRLAKNLEAKDITAAAIHGNKSQGARTKALADFKSGAVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G A +LV+ E+ K +  
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGHAVSLVSNEETKLLRD 357

Query: 360 IEKLIEKKVD 369
           IE LI++ ++
Sbjct: 358 IELLIKQNLE 367


>gi|294139294|ref|YP_003555272.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293325763|dbj|BAJ00494.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 478

 Score =  333 bits (853), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 166/369 (44%), Positives = 243/369 (65%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV   GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTSLGLSAPILKAVASKGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +G RA+ +  R L+L PTRELAAQVA++ E YGK   L  A++ GG+    Q  KL
Sbjct: 61  ELLSRGNRAQAKKVRALVLTPTRELAAQVAESVETYGKYLPLKSAVIFGGVGIGPQISKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD +N+G +  N +E+L++DEADRMLDMGFI  I+ I  ++P  RQ
Sbjct: 121 GKGVDILVATPGRLLDLYNQGAVNFNQLEVLILDEADRMLDMGFIHDIKKILRVLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +D+++K+++  + NP  I V   ++TA+++E  ++    Q  K  AL+   L
Sbjct: 181 NLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATAKSVEQ-YIYMVDQKQKTAALIH--L 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  K  ++F   K     +  +LE    +  AIHGN  Q +R K L+NFK G ++++
Sbjct: 238 IKQNDWKQVLVFSRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKALANFKNGAVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + +V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ ++ K +  
Sbjct: 298 VATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSGDESKLLRD 357

Query: 360 IEKLIEKKV 368
           IE+LI++ +
Sbjct: 358 IERLIKQNI 366


>gi|114776507|ref|ZP_01451552.1| Superfamily II DNA and RNA helicase [Mariprofundus ferrooxydans
           PV-1]
 gi|114553337|gb|EAU55735.1| Superfamily II DNA and RNA helicase [Mariprofundus ferrooxydans
           PV-1]
          Length = 414

 Score =  333 bits (853), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 169/369 (45%), Positives = 242/369 (65%), Gaps = 5/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  ++   +   Y KPTP+Q+++IP +L+  DV   AQTGTGKTA F LPML
Sbjct: 1   MTFASLGLSAPIL-ETITVTYTKPTPVQLESIPAILKGRDVMAAAQTGTGKTAGFTLPML 59

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +G R R    R LIL PTRELA QV D+  +YG    L  A++ GG+    Q  KL
Sbjct: 60  HLLAQGPRVRANQVRALILVPTRELAGQVGDSVVRYGVRLPLRSAVVFGGVKINPQMMKL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD   +  +  N +EILV+DEADRMLDMGF+  ++ I +L+P  RQ
Sbjct: 120 RKGVDILVATPGRLLDLHQQNAVRFNQLEILVLDEADRMLDMGFMDELKKILALLPVKRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++ +++  + +P  I VN  +STA TIEHC      Q  +K ALL++L+
Sbjct: 180 NLMFSATYSDEIRALAKTIVHHPVEICVNPANSTATTIEHCLYPVDKQ--QKNALLKKLI 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  +  ++FC  K+    L   LE+Q  S  AIHG+  Q +R + LS FK   +Q++
Sbjct: 238 KDND-WQQVLVFCKTKQAADRLVRFLEQQAISAAAIHGDKSQGARTRALSEFKNSQVQVL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARGLDIP +  V N+D+P+ A++YIHRIGRTGRAG  G+A +LV  ++   + A
Sbjct: 297 VATDLAARGLDIPQLPQVVNYDLPHVAQDYIHRIGRTGRAGVSGQAVSLVCADEFDELAA 356

Query: 360 IEKLIEKKV 368
           +E++I++ +
Sbjct: 357 VERVIQQLI 365


>gi|226942516|ref|YP_002797589.1| DEAD box family ATP-dependent RNA helicase [Azotobacter vinelandii
           DJ]
 gi|226717443|gb|ACO76614.1| ATP-dependent RNA helicase, DEAD box family [Azotobacter vinelandii
           DJ]
          Length = 557

 Score =  332 bits (852), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 182/428 (42%), Positives = 258/428 (60%), Gaps = 21/428 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V AV  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAVEAAGYAQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L  G       R   R  R L+L PTRELAAQV D+F+ Y ++  L  A + GG+   
Sbjct: 61  ERLFPGGHPDKEHRHGPRQARVLVLTPTRELAAQVHDSFKLYARDLKLVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQVQALSRGVDVLVACPGRLLDLVGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L +P+RIEV  P++T E IE       A +  K A
Sbjct: 181 LPPKRQNLLFSATFSADIVNLTNKLLHDPERIEVTPPNTTVERIEQRVFRLPAGH--KRA 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +Q   +  ++F   K     L   L+K G    AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLV-TQGAWEQVLVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALADFKS 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           GTI+++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GTIRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            K + +IE++  + +   DW   D+ ++         A+    R+ +P    S G   + 
Sbjct: 358 EKLLKSIERMTRQSIPEGDWAGFDIGAVE--------AEKPEVREAHPPRNASAGRKDKG 409

Query: 411 KNYSSQKS 418
           K+   +KS
Sbjct: 410 KDKGQEKS 417


>gi|121606092|ref|YP_983421.1| DEAD/DEAH box helicase domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120595061|gb|ABM38500.1| DEAD/DEAH box helicase domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 487

 Score =  332 bits (852), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 172/372 (46%), Positives = 243/372 (65%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L+  +  AV + GY   TPIQ + IP+VLQ  DV G AQTGTGKTA+F LP+L  
Sbjct: 5   FSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFALPLLQR 64

Query: 63  LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + K      +  R P R L+L PTRELA QVA+  + Y K  NL  A++ GG+  + Q  
Sbjct: 65  MMKHENASTSPARHPVRALVLLPTRELAVQVAEQVKLYAKYTNLNSAVVFGGMDMKPQTL 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P  
Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNTVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R TLLFSAT + E+++++ +FLQ+P  IEV   ++TA T+E  F +  A   ++   L Q
Sbjct: 185 RITLLFSATFSPEIKRLAASFLQDPVTIEVARSNATAATVEQHFYSVGADDKRRA--LHQ 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+++D +K   +F N K     L  SLE++G    A+HG+  Q  R+K L +FK G + 
Sbjct: 243 ILKARD-LKQAFVFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLKALESFKSGEVD 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+V +D+AARGLDI DV  VFNFDVP  AE+Y+HRIGRTGRAG  G A + VA  D + +
Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVSFVAASDQRLV 361

Query: 358 DAIEKLIEKKVD 369
             IEKLI+ K++
Sbjct: 362 TDIEKLIKTKIE 373


>gi|170691820|ref|ZP_02882984.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170143104|gb|EDT11268.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 493

 Score =  332 bits (852), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 174/374 (46%), Positives = 242/374 (64%), Gaps = 8/374 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+P ++ AV ++GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N + Y K+  L  A++ GG+    Q++
Sbjct: 73  LLPQASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQSE 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 QLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L++P+ IEV   +STA  +    V   A+  K  A++Q 
Sbjct: 193 RQTLLFSATFSGEIKKLAATYLRDPQTIEVARSNSTATNVTQ-IVYEVAEGDKTGAVVQ- 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  + ++K  I+FCN K     L  SLE+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 -LIRERSLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRTQNERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKKVDWL 371
             IEKLI++ ++ L
Sbjct: 370 ADIEKLIKRPLEVL 383


>gi|218676102|ref|YP_002394921.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218324370|emb|CAV25741.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 523

 Score =  332 bits (852), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 169/367 (46%), Positives = 236/367 (64%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+   GY KP+PIQ K +P VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG R R    R L+L PTRELAAQV  +  KYG N  LT  ++ GG+    Q +KL
Sbjct: 61  EMLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G+DVL+ TPGR+LD +N+  +  + +EILV+DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 121 RKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +D+++ +++  + NP  I V+  +STA T+E           KK  +L +L+
Sbjct: 181 NLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPV--DKKKKAPMLAKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  +  ++F   K     L   LE+Q  +   IHGN  Q +R K L NFK G ++++
Sbjct: 239 KDND-WRQVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NFD+PN +E+Y+HRIGRTGRAG  GKA +LV  +++  +  
Sbjct: 298 VATDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFG 357

Query: 360 IEKLIEK 366
           IE+LI++
Sbjct: 358 IERLIQQ 364


>gi|89072882|ref|ZP_01159439.1| putative ATP-dependent RNA helicase RhlE [Photobacterium sp. SKA34]
 gi|89051404|gb|EAR56859.1| putative ATP-dependent RNA helicase RhlE [Photobacterium sp. SKA34]
          Length = 496

 Score =  332 bits (852), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 173/367 (47%), Positives = 239/367 (65%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  ++ AV   GY KP+PIQ + IP +L   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLSAPILEAVAKQGYEKPSPIQEQAIPAILAGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  GR AR    R L+L PTRELAAQV ++   Y KN  L+ A++ GG+    Q  ++
Sbjct: 61  ERLANGRPARSNHVRALVLTPTRELAAQVGESVATYSKNLRLSSAVVFGGVKVNPQMLRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D  ++  +   ++EILV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLHSQNAVKFRDVEILVLDEADRMLDMGFIRDIRKILALLPKERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++++++  + NP  I+VN  + TA T++           KK  LL +LL
Sbjct: 181 NLLFSATFSDEIRELAKGLVSNPVEIDVNPRNQTARTVKQWICPV--DQKKKPNLLTKLL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  ++F   K     L   LE +G S  AIHGN  Q +R K L+NFK G I+++
Sbjct: 239 NKRN-WKQVLVFTKTKHGANKLATHLESRGISAAAIHGNKSQGARTKALANFKSGDIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+P+ AE+Y+HRIGRTGRAG  G+A +LV+ E+ K + A
Sbjct: 298 VATDIAARGLDIEQLPQVVNFDLPHVAEDYVHRIGRTGRAGCVGEAISLVSAEEAKDLAA 357

Query: 360 IEKLIEK 366
           IE+L ++
Sbjct: 358 IERLTQQ 364


>gi|86144457|ref|ZP_01062789.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
 gi|85837356|gb|EAQ55468.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
          Length = 523

 Score =  332 bits (851), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 169/367 (46%), Positives = 236/367 (64%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+   GY KP+PIQ K +P VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG R R    R L+L PTRELAAQV  +  KYG N  LT  ++ GG+    Q +KL
Sbjct: 61  EMLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G+DVL+ TPGR+LD +N+  +  + +EILV+DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 121 RKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +D+++ +++  + NP  I V+  +STA T+E           KK  +L +L+
Sbjct: 181 NLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPV--DKKKKAPMLAKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  +  ++F   K     L   LE+Q  +   IHGN  Q +R K L NFK G ++++
Sbjct: 239 KDND-WRQVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NFD+PN +E+Y+HRIGRTGRAG  GKA +LV  +++  +  
Sbjct: 298 VATDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFG 357

Query: 360 IEKLIEK 366
           IE+LI++
Sbjct: 358 IERLIQQ 364


>gi|296273966|ref|YP_003656597.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098140|gb|ADG94090.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 480

 Score =  332 bits (851), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 175/420 (41%), Positives = 264/420 (62%), Gaps = 10/420 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ A+ D GY+KP+PIQ + IP++L++HDV   AQTGTGKTA F LP+L
Sbjct: 1   MTFKELGLIEPLLKAIKDKGYIKPSPIQEQAIPIILEKHDVLAGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            IL K  +    P  R LIL PTRELAAQVA + + YGK   L  A++ GG+    Q   
Sbjct: 61  QILSKKESNNTKPEIRALILTPTRELAAQVAQSVDDYGKYLPLKTAVIFGGVGINPQKAL 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           + +G D++I TPGR+LDH  +  + ++++E  ++DEADRMLDMGFI  I+ + +L+P  R
Sbjct: 121 IRKGVDIVIATPGRLLDHIEQKTIDISHVEHFILDEADRMLDMGFIRDIRKVLALLPSHR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +DE++K+S+  L  PK IEV   ++++E +    V       +K  LL +L
Sbjct: 181 QNLLFSATFSDEIKKLSDGILNKPKLIEVARRNTSSEMVSQ--VIHLVDKDRKKTLLSKL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++  D  +  ++F   K     L   LE  G +  AIHGN  Q +R K L++FK G +++
Sbjct: 239 IKEGD-WRQVLVFTRTKHGANKLSQQLEIDGITATAIHGNKSQGARTKALADFKAGAVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV NF++PN AE+Y+HRIGRTGRAG  G+A +LV  ++  ++ 
Sbjct: 298 LVATDIAARGIDIDQLPHVVNFELPNVAEDYVHRIGRTGRAGNEGQAVSLVCVDEHDYLK 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEKLI+  +  +  +   ++P ++   I+   +  +NN     S   +  KK +SS+K+
Sbjct: 358 GIEKLIKTSIKKVLIEGFEVDPSIKAEPISNGRNKGRNN-----SNSRNTPKKEFSSEKN 412


>gi|323525320|ref|YP_004227473.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323382322|gb|ADX54413.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
          Length = 486

 Score =  332 bits (850), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 174/372 (46%), Positives = 239/372 (64%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+P ++ AV ++GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N + Y K+  L  A++ GG+    Q+ 
Sbjct: 73  LLPHASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQSD 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 QLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   +STA  +    V   A+  K  A++Q 
Sbjct: 193 RQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQ-IVYEVAEGDKTGAVVQ- 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +  +K  I+FCN K     L  SLE+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 -LIRERNLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFSPNEKKQL 369

Query: 358 DAIEKLIEKKVD 369
             IEKLI++ ++
Sbjct: 370 ADIEKLIKRPLE 381


>gi|78776226|ref|YP_392541.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251]
 gi|78496766|gb|ABB43306.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 398

 Score =  332 bits (850), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 166/374 (44%), Positives = 244/374 (65%), Gaps = 6/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ D GY KPTPIQ + IP++L + D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFTTLGLSAPILKAIKDQGYTKPTPIQKQAIPIILSKKDILAGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L + ++  +   R LIL PTRELAAQV ++   YGK  + T  ++ GG+    Q   L
Sbjct: 61  ELLSRDKSSTKKRIRALILTPTRELAAQVGESVSIYGKYLSFTSTIIYGGVSINPQLSAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D++I TPGR+LDH ++  + + ++E LV+DEADRMLDMGFI  I+ + +++P  +Q
Sbjct: 121 RKGVDIVIATPGRLLDHLSQKSIDLKDVEFLVLDEADRMLDMGFINDIKKVLAVLPKNKQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT +DE++K+S+  L +P  IEV  P+ TA++I+        +  +K  LL  L+
Sbjct: 181 TLLFSATYSDEIKKLSDRLLNSPVLIEVERPNKTAQSIKQIVYPVDKE--RKRELLVHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +   +  ++F   K     L   LEK G S  AIHGN  Q +RMK L  FK+G I+++
Sbjct: 239 K-EGKWQQVLVFTRTKHGANKLSAQLEKDGISSSAIHGNKSQNARMKALQEFKDGDIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV N+++PN  E+Y+HRIGRTGRAG  G A +LV  ++ +++ +
Sbjct: 298 VATDIAARGIDIDQLPHVINYELPNVPEDYVHRIGRTGRAGSSGDAISLVCIDEHEYLSS 357

Query: 360 IEKLIEKKVD--WL 371
           IEKLI+  +   WL
Sbjct: 358 IEKLIKTDIQKVWL 371


>gi|113866560|ref|YP_725049.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
 gi|113525336|emb|CAJ91681.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
          Length = 520

 Score =  332 bits (850), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 170/378 (44%), Positives = 245/378 (64%), Gaps = 12/378 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY  PTPIQ + IP +L+  D+   AQTGTGKTA F LPML
Sbjct: 1   MSFSELGLSDKIVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRAR--------VRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
            +L    AR         R+P R L+L PTRELAAQV ++   YGK   L   ++ GG+ 
Sbjct: 61  QLLSDSAARGANGAQRPARLPVRALVLTPTRELAAQVEESVRNYGKYLRLRSMVMFGGVG 120

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q ++L+RG ++++ TPGR+LDH ++  + ++ +E+LV+DEADRMLDMGFI  I+ I 
Sbjct: 121 INPQIEQLKRGVEIVVATPGRLLDHVSQRTIDLSQVELLVLDEADRMLDMGFIHDIRKIL 180

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +++P  RQ LLFSAT +D+++ +++  L NP  IEV   ++TAET++           +K
Sbjct: 181 NVLPAKRQNLLFSATFSDDIRALADRLLNNPASIEVARRNTTAETVDQRVYPV--DRERK 238

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL  L++  D  +  ++F   K     L   L K G S  AIHGN  Q +R + LS F
Sbjct: 239 RELLAHLVRQHDWHQV-LVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEF 297

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K GT++L+VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  
Sbjct: 298 KSGTLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCV 357

Query: 352 EDIKHIDAIEKLIEKKVD 369
           ++I  +  IE+LI++K++
Sbjct: 358 DEIALLRDIERLIKRKLE 375


>gi|209517599|ref|ZP_03266438.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209502012|gb|EEA02029.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 510

 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 172/373 (46%), Positives = 240/373 (64%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+P ++ A+ ++GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 35  FDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 94

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N + Y K+  L  A++ GG+    Q++
Sbjct: 95  LLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSE 154

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  +++LV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 155 QLRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKE 214

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   +STA  +    V   A+  K  A+++ 
Sbjct: 215 RQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQV-VYEVAEGDKTGAVVK- 272

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +  +K  I+FCN K     L  SLE+ G    AIHG+  Q  RM+ L  FK G ++
Sbjct: 273 -LIRERGLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQSERMQALDAFKRGEVE 331

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 332 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 391

Query: 358 DAIEKLIEKKVDW 370
             IEKLI++ +D 
Sbjct: 392 ADIEKLIKRPLDL 404


>gi|295675961|ref|YP_003604485.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
 gi|295435804|gb|ADG14974.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 484

 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 173/373 (46%), Positives = 239/373 (64%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+P ++ A+ ++GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N + Y K+  L  A++ GG+    Q+ 
Sbjct: 73  LLPQANTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSD 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  +++LV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 QLRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   +STA  +    V   A+  K  A++Q 
Sbjct: 193 RQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQV-VYEVAEGDKTGAVVQ- 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +  +K  I+FCN K     L  SLE+ G    AIHG+  Q  RM+ L  FK G ++
Sbjct: 251 -LIRERGLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQSERMQALDAFKRGEVE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKKVDW 370
             IEKLI++ +D 
Sbjct: 370 ADIEKLIKRPLDL 382


>gi|288942468|ref|YP_003444708.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288897840|gb|ADC63676.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
           180]
          Length = 438

 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 165/369 (44%), Positives = 235/369 (63%), Gaps = 3/369 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS +++ A+   GY +PTPIQ K IP VL R DV   AQTGTGKTA+F LPML
Sbjct: 1   MSFSALGLSAELLRAIAAQGYTQPTPIQSKAIPAVLARRDVLAAAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L +   R R PR L+L PTRELAAQV ++   YG++  L    + GG+    Q   L 
Sbjct: 61  HLLSQSTQRQRAPRALVLTPTRELAAQVGESVSTYGQHLPLRALQIFGGVGMVPQTTALR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+LDH  +G + ++ IE  V+DEADRMLDMGFI  I+ +  L+P  RQ 
Sbjct: 121 RGVDILVATPGRLLDHVGQGHVDLSKIEFFVLDEADRMLDMGFIHDIRRVLKLLPSKRQN 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT + E+++++   L +P RIEV   ++ AET+    V   A+ +K+  L   +LQ
Sbjct: 181 LLFSATYSREIEQLAIGLLHDPLRIEVAPRNTAAETVTQV-VHPVAREAKRSLLSHLILQ 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  +IF   K     L   L + G +  AIHGN  Q +R + L++FK G ++ +V
Sbjct: 240 GD--WQQVLIFTRTKHGANRLAEQLGRDGITAAAIHGNKSQGARTRALADFKSGALRALV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAG  G A +L++ ++   +  I
Sbjct: 298 ATDIAARGLDIDRLPHVVNFELPNVPEDYVHRIGRTGRAGSDGTAVSLISPDERGLLAGI 357

Query: 361 EKLIEKKVD 369
           E+L+ +++D
Sbjct: 358 ERLLGRRID 366


>gi|104783960|ref|YP_610458.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95112947|emb|CAK17675.1| ATP-dependent RNA helicase RhlE, DEAD box family [Pseudomonas
           entomophila L48]
          Length = 634

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 175/404 (43%), Positives = 252/404 (62%), Gaps = 13/404 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L  G       R   R PR L+L PTRELAAQV D+F+ Y ++ N   A + GG+   
Sbjct: 61  ERLFPGGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLNFISACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + +G DVL+  PGR+LD   +G + ++ +EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQVQAMAKGVDVLVACPGRLLDLAGQGSVDLSRVEILVLDEADRMLDMGFIHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  +++  L NP+RIEV  P++T E IE       A  S K A
Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPA--SHKRA 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   LEK G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TLGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            T++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A ++VA ++
Sbjct: 298 NTVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHAR 394
            K + +IE++ ++K+   D +  D S++     ++   Q N+ R
Sbjct: 358 EKLLKSIERVTKQKIPDGDLMGFDASTVEAEKPEVRERQQNNGR 401


>gi|254228105|ref|ZP_04921535.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262395917|ref|YP_003287770.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25]
 gi|151939601|gb|EDN58429.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262339511|gb|ACY53305.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25]
          Length = 522

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 170/367 (46%), Positives = 237/367 (64%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ K IP +L+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G R R    R LIL PTRELAAQV +N   YG++  L+ A++ GG+    Q ++L
Sbjct: 61  ERLSNGSRVRANQVRALILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +N+  +  + +E+LV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ +++  + NP  I VN  +STA T+E       A   KK  +L +L+
Sbjct: 181 NLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYP--ADVKKKAPMLVKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  K  ++F   K     L   L +Q     AIHGN  Q +R K L++FK G I+++
Sbjct: 239 KDGD-WKQVLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV   +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFA 357

Query: 360 IEKLIEK 366
           IE+LI++
Sbjct: 358 IERLIQE 364


>gi|258620096|ref|ZP_05715135.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
 gi|258587454|gb|EEW12164.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
          Length = 464

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 173/391 (44%), Positives = 250/391 (63%), Gaps = 10/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG R R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPRVRANQVRALILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADVLVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C     A   KK A+L +L+
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPAMLVKLV 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386
           IE+L +  +  +N  L+   P    P  K+D
Sbjct: 358 IERLTQALLPRIN--LAGFEPTNLLPESKLD 386


>gi|146284249|ref|YP_001174402.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri A1501]
 gi|145572454|gb|ABP81560.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas stutzeri
           A1501]
 gi|327482632|gb|AEA85942.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri DSM 4166]
          Length = 609

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 177/425 (41%), Positives = 259/425 (60%), Gaps = 14/425 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +  AV  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
            +L  G       R   + PR L+L PTRELAAQV D+F+ Y ++  L  A++ GG+   
Sbjct: 61  ELLFPGGHPDREHRYGPKQPRVLVLTPTRELAAQVHDSFKVYARDLPLKSAVIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + +G DVL+  PGR+LD  N+  + ++++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQIQAVAKGIDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   LQNP+RIEV  P++T E IE       +  S K A
Sbjct: 181 LPAKRQNLLFSATFSKDITDLAAKLLQNPERIEVTPPNTTVERIEQRVFRVAS--SHKRA 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +Q   +  ++F   K     L   LEK G    AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             ++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 NQVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            K +  IE++ ++++   +GDL   +     I+  +        P PQ+     R +++ 
Sbjct: 358 EKLLKGIERMTKQRIP--DGDLQGFD--ASSIEAEKPEVREPRQPRPQRGERKARGERDK 413

Query: 414 SSQKS 418
            ++K 
Sbjct: 414 PAEKG 418


>gi|262164808|ref|ZP_06032546.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM223]
 gi|262027188|gb|EEY45855.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM223]
          Length = 464

 Score =  330 bits (846), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 173/391 (44%), Positives = 250/391 (63%), Gaps = 10/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG R R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPRVRANQVRALILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADVLVATPGRLMDLYNQNAIKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C     A   KK A+L +L+
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPAMLVKLV 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386
           IE+L +  +  +N  L+   P    P  K+D
Sbjct: 358 IERLTQALLPRIN--LAGFEPTNLLPESKLD 386


>gi|254491257|ref|ZP_05104438.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxidans
           DMS010]
 gi|224463770|gb|EEF80038.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxydans
           DMS010]
          Length = 442

 Score =  330 bits (846), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 167/369 (45%), Positives = 238/369 (64%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL+  ++ A+ + GY  P+PIQ K IP ++Q HDV   AQTGTGKTA F LP+L
Sbjct: 1   MTFSSLGLADPILQAISEQGYDTPSPIQAKAIPPIMQGHDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G+ A     R L+L PTRELAAQVAD+ + YGK   L   ++ GG+    Q  +L
Sbjct: 61  HRLASGKPASANQVRALVLTPTRELAAQVADSVQTYGKFLPLRSTVVFGGVKINPQMMRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGAD+L+ TPGR+LD + +  +  +++E+L++DEADRMLDMGFI  I+ I S +P  RQ
Sbjct: 121 RRGADILVATPGRLLDLYQQNAVRFDHLEVLILDEADRMLDMGFIHDIRKIISFLPKKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT + +++ +++  + NP  I V+  +STA T++           KK  LL QL+
Sbjct: 181 NLMFSATFSTDIRSLAKTLVNNPIEISVSPANSTATTVKQWIAPV--DKKKKPELLSQLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  ++F   K     L   LE  G S  AIHGN  Q +R K L++FK G  Q++
Sbjct: 239 NTHQWTQV-LVFSRTKHGANKLTRHLESVGLSAAAIHGNKSQGARTKALADFKAGDKQIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + HV NFD+PN AE+Y+HRIGRTGRAG  G+A +LV+ ++++H+  
Sbjct: 298 VATDIAARGLDIDQLPHVVNFDLPNVAEDYVHRIGRTGRAGATGEAISLVSADEVEHLWN 357

Query: 360 IEKLIEKKV 368
           IE+LI K +
Sbjct: 358 IERLIGKNL 366


>gi|224826248|ref|ZP_03699350.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224601349|gb|EEG07530.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 456

 Score =  330 bits (846), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 170/396 (42%), Positives = 253/396 (63%), Gaps = 18/396 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+LGLSP+++ A+ + GY +PTPIQ K IPLVL   D+   AQTGTGKTA+F+LP+L
Sbjct: 1   MSFAELGLSPEILRAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLPIL 60

Query: 61  TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L+K  +    P     R LIL PTRELA Q+A N   Y K   L   ++ GG+  + Q
Sbjct: 61  ERLKKFASTSASPAMHPVRALILSPTRELADQIAVNAAAYTKYLPLRSTVVFGGMNMDPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L RG ++LI TPGR+LDH  +  + +N +++LV+DEADRMLDMGFI  I+ I  ++P
Sbjct: 121 TQELRRGVEILIATPGRLLDHVGQKTVQLNKVDVLVLDEADRMLDMGFINDIRKILGMLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            TRQTLLFSAT   E+++++E F+ +P+ +EV   +ST   +E    +  +Q  +K  LL
Sbjct: 181 RTRQTLLFSATFAPEIKRLAEEFMHDPQTVEVARQNSTNAQVEQLVFSVDSQ--RKRYLL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++ +  M   I+FC  K +   L   L++ G +  AIHG+  Q +R++ L+ FK G 
Sbjct: 239 SHLIRERQ-MGQVIVFCKTKLSADQLARDLKRDGHAAEAIHGDKAQGARLETLTAFKNGE 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGLDI ++ +V NF++PN  E+Y+HRIGRTGRAG  G A +L+ +++ K
Sbjct: 298 VKVLVATDVAARGLDISELPYVVNFELPNAPEDYVHRIGRTGRAGASGVAISLMGQDEGK 357

Query: 356 HIDAIEKLIEKKV----------DWLNGDLSSLNPP 381
            ++AIEKL  + +           WL      + PP
Sbjct: 358 QLEAIEKLTRQTLKPQPVSGFWPSWLERPADEIAPP 393


>gi|258624900|ref|ZP_05719828.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
 gi|258582898|gb|EEW07719.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
          Length = 451

 Score =  330 bits (846), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 173/391 (44%), Positives = 250/391 (63%), Gaps = 10/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG R R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPRVRANQVRALILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADVLVATPGRLMDLYNQNAIKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C     A   KK A+L +L+
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPAMLVKLV 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386
           IE+L +  +  +N  L+   P    P  K+D
Sbjct: 358 IERLTQALLPRIN--LAGFEPTNLLPESKLD 386


>gi|170719671|ref|YP_001747359.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida W619]
 gi|169757674|gb|ACA70990.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 630

 Score =  330 bits (846), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 173/387 (44%), Positives = 246/387 (63%), Gaps = 12/387 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV D+F+ Y ++  L  A + GG+   
Sbjct: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + +G DVL+  PGR+LD   +G++ + ++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGRVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  +++  L NP+RIEV  P++T E IE       A  S K A
Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPA--SHKRA 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   LEK G S  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TLGAWEQVLVFTRTKHGANRLAEYLEKHGLSAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            +++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 NSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNP 380
            K + +IE++  +K+   +GDL   +P
Sbjct: 358 EKLLKSIERVTRQKI--ADGDLMGFDP 382


>gi|187923247|ref|YP_001894889.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
 gi|187714441|gb|ACD15665.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 489

 Score =  330 bits (846), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 174/372 (46%), Positives = 240/372 (64%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+P ++ AV ++GY  PTPIQ + IP+VL   D+ G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N + Y K+  L  A++ GG+    Q++
Sbjct: 73  LLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSE 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 QLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   +STA  +    V   A+  K  A++Q 
Sbjct: 193 RQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQV-VYEVAEGDKTGAVVQ- 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +  +K  I+FCN K     L  SLE+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 -LIRERGLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRTQNERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKKVD 369
             IEKLI++ +D
Sbjct: 370 ADIEKLIKRPLD 381


>gi|262172952|ref|ZP_06040629.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus MB-451]
 gi|261890310|gb|EEY36297.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus MB-451]
          Length = 464

 Score =  330 bits (846), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 173/391 (44%), Positives = 250/391 (63%), Gaps = 10/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG R R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPRVRANQVRALILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADVLVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C     A   KK A+L +L+
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPAMLVKLV 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386
           IE+L +  +  +N  L+   P    P  K+D
Sbjct: 358 IERLTQALLPRIN--LAGFEPTNLLPESKLD 386


>gi|59713334|ref|YP_206109.1| RNA helicase [Vibrio fischeri ES114]
 gi|59481582|gb|AAW87221.1| RNA helicase [Vibrio fischeri ES114]
          Length = 500

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 168/367 (45%), Positives = 240/367 (65%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ++ IP V++  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G + +    R L+L PTRELAAQV ++ EKY KN  LT  ++ GG+    Q ++L
Sbjct: 61  ERLSNGPKRKFNQVRALVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DVL+ TPGR+LD  N+  +  + +EILV+DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 121 RRGVDVLVATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILAKLPKNRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++++++  +++P  I V   ++TAET+E           +K  +L +L+
Sbjct: 181 NLLFSATFSDEIRQLAKGLVKDPVEISVAKRNTTAETVEQSVYVM--DKGRKPKVLTKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  K  ++F   K     L  +LE++G S  AIHGN  Q +R K L+NFK G ++++
Sbjct: 239 KDND-WKQVLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N D+P   E+Y+HRIGRTGRAG  GKA + V++++ K + A
Sbjct: 298 VATDIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEAKELFA 357

Query: 360 IEKLIEK 366
           IE+LI+K
Sbjct: 358 IERLIQK 364


>gi|167625497|ref|YP_001675791.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167355519|gb|ABZ78132.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 492

 Score =  330 bits (845), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 169/399 (42%), Positives = 255/399 (63%), Gaps = 4/399 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS +++ AV + GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG +A  +  R L+L PTRELAAQ+ ++ E YG+   L  A++ GG+    Q  KL
Sbjct: 61  ELLSKGTKAPAKQVRALVLTPTRELAAQIGESVEVYGQFLPLKSAVIFGGVGIGPQITKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD +N+  +  + +E+LV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 NRGVDILVATPGRLLDLYNQRAVSFSQLEVLVLDEADRMLDMGFIHDIKKILAILPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +D+++++++  + NP  I V   ++TA T++         + +K A+L +L+
Sbjct: 181 NLMFSATFSDDIRQLAKGLVNNPVEISVTPRNATANTVKQWICPV--DHGQKVAVLIELI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+  +  ++F   K     L  +LE +G +  AIHGN  Q +R K L++FK G ++++
Sbjct: 239 K-QNDWQQVLVFSRTKHGANRLAKNLEAKGITAAAIHGNKSQGARTKALADFKSGAVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G A +LV+ E+IK +  
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGHAVSLVSSEEIKLLRD 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           IE LI++ ++    +       L + D+   +H +   P
Sbjct: 358 IELLIKQNLERRPVEGFEPTHSLPETDLTGKSHGQNKGP 396


>gi|197337698|ref|YP_002157744.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197314950|gb|ACH64399.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 496

 Score =  330 bits (845), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 168/367 (45%), Positives = 240/367 (65%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ++ IP V++  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G + +    R L+L PTRELAAQV ++ EKY KN  LT  ++ GG+    Q ++L
Sbjct: 61  ERLSNGPKRKFNQVRALVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DVL+ TPGR+LD  N+  +  + +EILV+DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 121 RRGVDVLVATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILAKLPKNRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++++++  +++P  I V   ++TAET+E           +K  +L +L+
Sbjct: 181 NLLFSATFSDEIRQLAKGLVKDPVEISVAKRNTTAETVEQSVYVM--DKGRKPKVLTKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  K  ++F   K     L  +LE++G S  AIHGN  Q +R K L+NFK G ++++
Sbjct: 239 KDND-WKQVLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N D+P   E+Y+HRIGRTGRAG  GKA + V++++ K + A
Sbjct: 298 VATDIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEAKELFA 357

Query: 360 IEKLIEK 366
           IE+LI+K
Sbjct: 358 IERLIQK 364


>gi|330448478|ref|ZP_08312126.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492669|dbj|GAA06623.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 494

 Score =  329 bits (844), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 172/367 (46%), Positives = 240/367 (65%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  ++ AV   GY KP+PIQ K IP +L+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLSAPILDAVAKQGYEKPSPIQEKAIPAILEGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G  AR    R L+L PTRELAAQV ++   YGKN  ++ A++ GG+    Q  ++
Sbjct: 61  ERLAGGCPARSNHVRALVLTPTRELAAQVGESVATYGKNLRISSAVVFGGVKVNPQMLRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D  ++  +   +IEILV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLHSQNAVKFRDIEILVLDEADRMLDMGFIRDIRKILALLPKERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++++++  + +P  I+VN  + TA T++           KK  LL +LL
Sbjct: 181 NLLFSATFSDEIRELAKGLVNDPVEIDVNPRNQTARTVKQWICPV--DKKKKPNLLTKLL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+   K  ++F   K     L   LE +G +  AIHGN  Q +R K L+NFK G I+++
Sbjct: 239 -SERNWKQVLVFTKTKHGANKLSAHLESRGITAAAIHGNKSQGARTKALANFKAGEIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+P+ AE+Y+HRIGRTGRAG  G+A +LV+ ++ K + A
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPHVAEDYVHRIGRTGRAGCEGEAISLVSADEFKELVA 357

Query: 360 IEKLIEK 366
           IE+L ++
Sbjct: 358 IERLTQQ 364


>gi|89901799|ref|YP_524270.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
 gi|89346536|gb|ABD70739.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
          Length = 506

 Score =  329 bits (844), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 173/374 (46%), Positives = 238/374 (63%), Gaps = 8/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA L L+  +  AV D GY   TPIQ + IP+VLQ  DV G AQTGTGKTA+F LP+L
Sbjct: 15  MAFAQLQLAAPLARAVADMGYETMTPIQAQAIPVVLQGRDVMGAAQTGTGKTAAFALPLL 74

Query: 61  TILEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             + K      +  R P R L+L PTRELA QVA   + Y  + NL  A++ GG+  + Q
Sbjct: 75  QRMLKHENSSTSPARHPVRALVLLPTRELADQVAQAIKDYAVHTNLRSAVVFGGMDMKPQ 134

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P
Sbjct: 135 TLELKKGVEVLVATPGRLLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 194

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R TLLFSAT + E+++++ ++LQ+P  IEV   ++ A T+E  F +  A   +    L
Sbjct: 195 KQRITLLFSATFSSEIKRLASSYLQDPVTIEVARSNAAASTVEQHFYSVDADDKRHA--L 252

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            Q+L+S+  MK   +F N K     L  SLE +G    A+HG+  Q  R+K L  FK G 
Sbjct: 253 HQILKSRG-MKQAFVFVNSKLGCARLARSLEHEGLKTTALHGDKSQDERLKALEAFKSGE 311

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + L+V +D+AARGLDI DV  VFNFD+P  AE+Y+HRIGRTGRAG  G A + VAK DI+
Sbjct: 312 VDLLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGAAGLAVSFVAKSDIR 371

Query: 356 HIDAIEKLIEKKVD 369
            +  IEKL+  K++
Sbjct: 372 LVADIEKLLNTKIE 385


>gi|209808966|ref|YP_002264504.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
           [Aliivibrio salmonicida LFI1238]
 gi|208010528|emb|CAQ80896.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
           [Aliivibrio salmonicida LFI1238]
          Length = 495

 Score =  329 bits (844), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 170/367 (46%), Positives = 239/367 (65%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV   GY  P+PIQ++ IP V++  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAVEAQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L KG + +    R LIL PTRELAAQV ++ EKY  N  LT  ++ GG+    Q ++L
Sbjct: 61  ERLSKGQKLKFNQVRALILTPTRELAAQVHESVEKYSVNLPLTSDVVFGGVKANPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DVL+ TPGR+LD  N+  +  + +EILV+DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 121 RKGVDVLVATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILNKLPKNRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++++++  + NP  I V T ++TAET+E          +KK  +L +L+
Sbjct: 181 NLLFSATFSDEIRQLAKGLVNNPVEISVATRNTTAETVEQSVYVV--DKTKKARVLTKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  K  ++F   K     L  +LE++G S  AIHGN  Q +R K L+NFK G ++++
Sbjct: 239 KDND-WKQVLVFSKTKHGANRLAKTLEEKGISSAAIHGNKSQGARTKALANFKSGQVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N D+P   E+Y+HRIGRTGRAG  GKA + V++++   + A
Sbjct: 298 VATDIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEASELFA 357

Query: 360 IEKLIEK 366
           IE+LI+K
Sbjct: 358 IERLIQK 364


>gi|146305460|ref|YP_001185925.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145573661|gb|ABP83193.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 628

 Score =  329 bits (844), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 179/420 (42%), Positives = 257/420 (61%), Gaps = 15/420 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V AV  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L        + R   + PR L+L PTRELAAQV D+F+ Y ++     A + GG+   
Sbjct: 61  ERLFPDGHPDREQRHGPKQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L +G DVL+  PGR+LD  N+  + ++++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQVQALAKGVDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A  S K A
Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAA--SHKRA 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +Q   +  ++F   K     L   LEK G    AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             ++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 NKVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            K + +IE++ ++K+   D +  D S++    E+ ++ +    R      QK+ G D+ K
Sbjct: 358 EKLLKSIERMTKQKIPDGDLMGFDASAVE--AERPEVREPRQPRNAGQKKQKAEGGDKPK 415


>gi|24375277|ref|NP_719320.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24350080|gb|AAN56764.1|AE015812_3 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 535

 Score =  329 bits (843), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 182/431 (42%), Positives = 261/431 (60%), Gaps = 17/431 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV + GY  P+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG +A+    R L+L PTRELAAQV ++ E YGK   L  A++ GG+P   Q  KL
Sbjct: 61  ELLAKGHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR+LD   +  +  N +EILV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++++++  + +P  I V   ++ A T++          ++K ALL QL+
Sbjct: 181 NLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPV--DKTQKSALLIQLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+  +  ++F   K     L  SL +   S  AIHGN  Q +R K L++FK G ++++
Sbjct: 239 K-QENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+IK +  
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKD 357

Query: 360 IEKLIEKKVDWLNGD---------LSSLNPPLEKID---IAQH-NHARKNNPIPQKSTGF 406
           IE+LI + ++    +          ++LNP  +      +A H  H     P P+  +G 
Sbjct: 358 IERLINRVLERQEVEGFSPVHALPETTLNPQGKDTKVKAVANHRKHRSAGKPAPRSGSGR 417

Query: 407 DRRKKNYSSQK 417
           D +    +SQ+
Sbjct: 418 DTQGNRENSQR 428


>gi|113971464|ref|YP_735257.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113886148|gb|ABI40200.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 549

 Score =  329 bits (843), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 183/429 (42%), Positives = 261/429 (60%), Gaps = 17/429 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV + GY  P+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG +A+V   R L+L PTRELAAQV+++ E YGK   L  A++ GG+P   Q +KL
Sbjct: 61  ELLSKGNKAKVGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR+LD   +  +  N +E+LV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 RHGVDVLVATPGRLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++++++  +  P  I V   ++ A T++          ++K ALL QL+
Sbjct: 181 NLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPV--DKNQKSALLIQLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+  +  ++F   K     L  SL +   S  AIHGN  Q +R K L++FK G ++++
Sbjct: 239 K-QENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+ K +  
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLVSSEETKLLRD 357

Query: 360 IEKLIEKKVDWLNGD---------LSSLNPPLEKIDI----AQHNHARKNNPIPQKSTGF 406
           IE+LI + ++    +          S+LN   ++  I    +Q  H     P P+  TG 
Sbjct: 358 IERLINRVLERQEVEGFSPVHALPESTLNAHGKENKIKAVASQRKHRSAGKPSPRAGTGR 417

Query: 407 DRRKKNYSS 415
           D RK   SS
Sbjct: 418 DGRKTPDSS 426


>gi|167036018|ref|YP_001671249.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida GB-1]
 gi|166862506|gb|ABZ00914.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 626

 Score =  329 bits (843), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 171/386 (44%), Positives = 247/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV D+F+ Y ++  L  A + GG+   
Sbjct: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + +G DVL+  PGR+LD   +GK+ + ++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  +++  L NP+RIEV  P++T E IE       A  S K A
Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPA--SHKRA 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +Q   +  ++F   K     L   LEK G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TQGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            +++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A ++VA ++
Sbjct: 298 NSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++++   +GDL   +
Sbjct: 358 EKLLKSIERVTKQRIQ--DGDLMGFD 381


>gi|30249765|ref|NP_841835.1| putative ATP-dependent RNA helicase protein [Nitrosomonas europaea
           ATCC 19718]
 gi|30180802|emb|CAD85718.1| putative ATP-dependent RNA helicase protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 457

 Score =  328 bits (842), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 167/372 (44%), Positives = 239/372 (64%), Gaps = 4/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L P +V AVL AGY  PTPIQ + IP ++  HDV   AQTGTGKTA+F+LP L
Sbjct: 1   MSFENLNLHPAIVKAVLAAGYTAPTPIQQQAIPDLIAGHDVMASAQTGTGKTAAFMLPAL 60

Query: 61  TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L    + R R PR L+L PTRELA QV+D   KYGK    + V  ++GG+P+  QNK 
Sbjct: 61  HRLATPAQIRGRGPRILVLTPTRELALQVSDAASKYGKFLPRINVVSILGGMPYPLQNKL 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  DVL+ TPGR++DH  RG++  + +E+LV+DEADRMLDMGFI  ++ I    P TR
Sbjct: 121 LSQTVDVLVATPGRLIDHIERGRIDFSRLEMLVLDEADRMLDMGFIQDVERIALSTPATR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+   ++K++   L+ PKRI+V    +  + IE   +      + K  LL  L
Sbjct: 181 QTLLFSATLDVAIEKIATRLLKAPKRIQVAAQHTKLDHIEQR-MHYVDDLTHKNRLLDHL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+   T+K  I+F   K++  +L  +L  QG    A+HG++ QR R + L+  ++G +++
Sbjct: 240 LRDT-TIKQAIVFTATKRDADSLADNLSSQGHKAAAMHGDMTQRERTRTLTGLRQGRLKI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI D+ HV NFD+P  AE+Y+HRIGRTGRAG  G A +  + +D+ H+ 
Sbjct: 299 LVATDVAARGIDIADITHVINFDLPKFAEDYVHRIGRTGRAGASGIAVSFASGKDVAHLK 358

Query: 359 AIEKLIEKKVDW 370
            IE+    + ++
Sbjct: 359 RIERFTGNRFEF 370


>gi|148550055|ref|YP_001270157.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida F1]
 gi|148514113|gb|ABQ80973.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 627

 Score =  328 bits (842), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 172/386 (44%), Positives = 247/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV D+F+ Y ++  L  A + GG+   
Sbjct: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + +G DVL+  PGR+LD   +GK+ + ++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  +++  L NP+RIEV  P++T E IE       A  S K A
Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPA--SHKRA 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   LEKQG +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            +++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 NSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++++   +GDL   +
Sbjct: 358 EKLLKSIERVTKQRI--ADGDLMGFD 381


>gi|328470214|gb|EGF41125.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus 10329]
          Length = 522

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 170/367 (46%), Positives = 236/367 (64%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ K IP +L+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G R R    R LIL PTRELAAQV +N   YG++  L+ A++ GG+    Q  +L
Sbjct: 61  ERLSNGPRVRANQVRALILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMLRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +N+  +  + +E+LV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ +++  + NP  I VN  +STA T+E       A   KK  +L +L+
Sbjct: 181 NLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYP--ADVKKKAPMLVKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  K  ++F   K     L   L +Q     AIHGN  Q +R K L++FK G I+++
Sbjct: 239 KDGD-WKQVLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV   +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEIGKAISLVCALEASELFA 357

Query: 360 IEKLIEK 366
           IE+LI++
Sbjct: 358 IERLIQE 364


>gi|241767199|ref|ZP_04764950.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
 gi|241362168|gb|EER58246.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
          Length = 489

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 172/372 (46%), Positives = 237/372 (63%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L+  +  AV + GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L  
Sbjct: 5   FSNLSLAEPLARAVAEMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQR 64

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L K  +    P     R L+L PTRELA QVA     Y K   L   ++ GG+  + Q  
Sbjct: 65  LLKHESSSTSPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQTL 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P  
Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R TLLFSAT + E+++++ ++LQ+P  IEV  P+ TA T+E  F +  A    K   + Q
Sbjct: 185 RTTLLFSATFSPEIKRLAGSYLQDPITIEVARPNETASTVEQHFYS--ANDDDKRHAIHQ 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+S+  +K   IF N K     L  SLE++G    A+HG+  Q  R+K L  FK+G + 
Sbjct: 243 VLKSRG-IKQAFIFVNSKLGCARLARSLEREGLKTAALHGDKSQDERLKALDAFKQGAVD 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+V +D+AARGLDI DV  VFNFDVP  AE+Y+HRIGRTGRAG  G A TLV+  D + +
Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSGSDARLV 361

Query: 358 DAIEKLIEKKVD 369
             IEKL++KK+D
Sbjct: 362 ADIEKLLKKKID 373


>gi|91224087|ref|ZP_01259350.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01]
 gi|91190998|gb|EAS77264.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01]
          Length = 517

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 170/367 (46%), Positives = 236/367 (64%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ K IP +L+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G R R    R LIL PTRELAAQV +N   YG++  L+ A++ GG+    Q  +L
Sbjct: 61  ERLSNGPRVRANQVRALILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMLRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +N+  +  + +E+LV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ +++  + NP  I VN  +STA T+E       A   KK  +L +L+
Sbjct: 181 NLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYP--ADVKKKAPMLVKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  K  ++F   K     L   L +Q     AIHGN  Q +R K L++FK G I+++
Sbjct: 239 KDGD-WKQVLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV   +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFA 357

Query: 360 IEKLIEK 366
           IE+LI++
Sbjct: 358 IERLIQE 364


>gi|28900245|ref|NP_799900.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837460|ref|ZP_01990127.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|260361632|ref|ZP_05774659.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260880805|ref|ZP_05893160.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260896485|ref|ZP_05904981.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|260899501|ref|ZP_05907896.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|28808556|dbj|BAC61733.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749260|gb|EDM60045.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|308089237|gb|EFO38932.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308092075|gb|EFO41770.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308109261|gb|EFO46801.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|308112745|gb|EFO50285.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
          Length = 522

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 170/367 (46%), Positives = 236/367 (64%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ K IP +L+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G R R    R LIL PTRELAAQV +N   YG++  L+ A++ GG+    Q  +L
Sbjct: 61  ERLSNGPRVRANQVRALILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMLRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +N+  +  + +E+LV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ +++  + NP  I VN  +STA T+E       A   KK  +L +L+
Sbjct: 181 NLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYP--ADVKKKAPMLVKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  K  ++F   K     L   L +Q     AIHGN  Q +R K L++FK G I+++
Sbjct: 239 KDGD-WKQVLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV   +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFA 357

Query: 360 IEKLIEK 366
           IE+LI++
Sbjct: 358 IERLIQE 364


>gi|297579675|ref|ZP_06941602.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
 gi|297535321|gb|EFH74155.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
          Length = 464

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 171/391 (43%), Positives = 250/391 (63%), Gaps = 10/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG + R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C     A   KK A+L +L+
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPAMLVKLV 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386
           IE+L +  +  +N  L+   P    P  K+D
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNLLPESKLD 386


>gi|223939310|ref|ZP_03631190.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
 gi|223892023|gb|EEF58504.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
          Length = 412

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 170/371 (45%), Positives = 235/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  +V  V   GYV+PTPIQ++ IPL+L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MAFSNLGLSQTMVDGVKAMGYVEPTPIQLRAIPLILSGQDVIGSAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + LE  + R   PR LILEPTRELAAQV      + +  NL  A+L GG+ +  Q   L+
Sbjct: 61  SKLESHQPR---PRLLILEPTRELAAQVETAIRDFARFTNLRAAVLYGGVGYGRQMDALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D++I TPGR+LDH  RG    + I+ LV+DEADRMLDMGF+P ++ I    P  R T
Sbjct: 118 AGVDIIIATPGRLLDHLERGTCKFDQIKYLVLDEADRMLDMGFLPDVRRIVDKCPRDRHT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT+  +++ + +  ++NP+ IE+    S AET++H          +K  LL++LL+
Sbjct: 178 SLFSATVPPQIETLIKWAMKNPQTIEIGARRSPAETVKHVIYPVAE--DQKSDLLRELLE 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +   + I+FC  K     +   L++   +V  +H N  QR R   L  F+ G  +++V
Sbjct: 236 RVN-YDSVIVFCRTKHRADRIAILLKRNNHAVAVLHSNRTQREREDALKGFRNGRFEVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI DV HV N+DVP   E+YIHRIGRTGRA   G AFTL+  ED +H+ +I
Sbjct: 295 ATDIAARGLDIADVSHVINYDVPQHPEDYIHRIGRTGRAAATGDAFTLMVAEDSQHVQSI 354

Query: 361 EKLIEKKVDWL 371
           E+ I KKV+ +
Sbjct: 355 ERFIGKKVERI 365


>gi|26991657|ref|NP_747082.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440]
 gi|24986754|gb|AAN70546.1|AE016697_1 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
           KT2440]
          Length = 626

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 172/386 (44%), Positives = 247/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV D+F+ Y ++  L  A + GG+   
Sbjct: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + +G DVL+  PGR+LD   +GK+ + ++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  +++  L NP+RIEV  P++T E IE       A  S K A
Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPA--SHKRA 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   LEKQG +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            +++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 NSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++++   +GDL   +
Sbjct: 358 EKLLKSIERVTKQRI--ADGDLMGFD 381


>gi|91787410|ref|YP_548362.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
 gi|91696635|gb|ABE43464.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
          Length = 492

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 171/372 (45%), Positives = 242/372 (65%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L+  +  AV + GY   TPIQ + IP+VLQ  DV G AQTGTGKTA+F LP+L  
Sbjct: 5   FSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFSLPLLQR 64

Query: 63  LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + K      +  R P R L+L PTRELA QVA+  + Y K+ NL  A++ GG+  + Q  
Sbjct: 65  MLKHENASTSPARHPVRALVLLPTRELAVQVAEQVKLYAKHTNLRSAVVFGGMDMKPQTL 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P  
Sbjct: 125 ELKQGVEVLVATPGRLLDHIEAKNTVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R TLLFSAT + E+++++ ++LQ+P  IEV   ++TA T+E  F +  A   ++   L Q
Sbjct: 185 RITLLFSATFSPEIKRLASSYLQDPVTIEVARSNATASTVEQHFYSVGADDKRRA--LHQ 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+ +  MK   +F N K     L  SLE++G    A+HG+  Q  R+K L  FK+G + 
Sbjct: 243 ILKERG-MKQAFVFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLKALDAFKKGEVD 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+V +D+AARGLDI DV  VFNFDVP  AE+Y+HRIGRTGRAG  G A + VA  D + +
Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVSFVASSDQRLV 361

Query: 358 DAIEKLIEKKVD 369
             IEKLI+ K++
Sbjct: 362 ADIEKLIKTKIE 373


>gi|114046344|ref|YP_736894.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113887786|gb|ABI41837.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 549

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 180/426 (42%), Positives = 254/426 (59%), Gaps = 21/426 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV + GY  P+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSSLGLSLPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG +A+    R L+L PTRELAAQV+++ E YGK   L  A++ GG+P   Q +KL
Sbjct: 61  ELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR+LD   +  +  N +EILV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RHGVDVLVATPGRLLDLVQQNVVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++++++  +  P  I V   ++ A T++          ++K ALL QL+
Sbjct: 181 NLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPV--DKNQKSALLIQLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +D  +  ++F   K     L  SL +   S  AIHGN  Q +R K L++FK G ++++
Sbjct: 239 KQED-WQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+ K +  
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEFKLLRD 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE---------------KIDIAQHNHARKNNPIPQKST 404
           IE+LI + ++    ++    P                  K   +Q  H     P P+  T
Sbjct: 358 IERLINRVLE--RQEIEGFGPAHALPESTLIAHGKDNKVKAVASQRKHRSAGKPTPRTGT 415

Query: 405 GFDRRK 410
           G D RK
Sbjct: 416 GRDGRK 421


>gi|311696498|gb|ADP99371.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15]
          Length = 440

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 168/368 (45%), Positives = 236/368 (64%), Gaps = 3/368 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS ++V A  D GY  P+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSSLGLSEQLVRATSDQGYETPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +     + PR LIL PTRELAAQV D+   Y K      A++ GG+    Q  KL 
Sbjct: 61  QRLGENPRTGKGPRALILTPTRELAAQVHDSVNLYSKYIPTKAAVVFGGVKINPQMMKLR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVL+ TPGR++D + +  +  N +EILV+DEADRMLDMGFI  I+ I SL+P  RQ 
Sbjct: 121 KGLDVLVATPGRLMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILSLLPAKRQN 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT ++E++ ++E  L NP ++EV   +++AE I+          S+K ALL +L++
Sbjct: 181 LLFSATFSNEIRTLAEGLLDNPVQVEVAARNTSAENIKQSVYPV--DQSQKTALLSKLVR 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             ++    ++F   K     L   LEK G +  AIHGN  Q +R + L++FK G ++++V
Sbjct: 239 D-NSWDQVLVFTRTKHGANRLTQKLEKDGITAAAIHGNKSQGARTRALADFKAGEVRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV+ ++ K +  I
Sbjct: 298 ATDIAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADEGKMLAGI 357

Query: 361 EKLIEKKV 368
           E+LI+K++
Sbjct: 358 ERLIKKQL 365


>gi|77461504|ref|YP_351011.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1]
 gi|77385507|gb|ABA77020.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 622

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 171/386 (44%), Positives = 244/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+ DAGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEDAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV D+F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKIYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A  S K A
Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPA--SHKRA 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L+K G    AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++K+   +GDL   +
Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381


>gi|186476836|ref|YP_001858306.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184193295|gb|ACC71260.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 482

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 172/372 (46%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F   GL   ++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP    
Sbjct: 13  FDQFGLHADILKAIAEQGYTTPTPIQAKAIPVVLGGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 59  MLTILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +L +     +  R P R LIL PTRELA QVA N + Y K+  L  A++ GG+    Q+ 
Sbjct: 73  LLPLANTSASPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQSA 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  +++LV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPTE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   +STA  +    V   A+  K  A++Q 
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTATNVTQ-IVYEVAEGDKTGAVVQ- 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  + ++K  I+FCN K     L   LE+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 -LIRERSLKQVIVFCNSKIGASRLARQLERDGVVATAIHGDRSQSERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFSPNERKQL 369

Query: 358 DAIEKLIEKKVD 369
             IEKLI++ +D
Sbjct: 370 ADIEKLIKRPLD 381


>gi|312796956|ref|YP_004029878.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
 gi|312168731|emb|CBW75734.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
          Length = 508

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 170/373 (45%), Positives = 236/373 (63%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F   GL+  ++ A+ + GY KPTPIQ + IP+VL   DV G AQTGTGKTASF LP  
Sbjct: 42  LSFDGFGLAAPILQAIGEQGYTKPTPIQAQAIPIVLAGRDVMGAAQTGTGKTASFSLPII 101

Query: 59  --MLTILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             +L +     +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q
Sbjct: 102 QRLLPLASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNPQ 161

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L RG ++LI TPGR+LDH  +    +  +++LV+DEADRMLDMGF+P +Q I +L+P
Sbjct: 162 TAELRRGVEILIATPGRLLDHVQQKSTSLAQVQMLVLDEADRMLDMGFLPDLQRILNLLP 221

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT + E++K++  +L++P  IEV   +STA  +    V   A+  K+ A++
Sbjct: 222 SQRQTLLFSATFSAEIKKLASTYLRDPVTIEVARSNSTASNVRQ-IVFEVAEPDKQAAVV 280

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q + Q +  +K  I+FCN K     L   LE+ G    AIHG+  Q  RM+ L  FK G 
Sbjct: 281 QLIRQRE--LKQVIVFCNSKIGASRLAKQLERDGVVATAIHGDRSQSERMQALDAFKRGE 338

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K
Sbjct: 339 IEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFSGNERK 398

Query: 356 HIDAIEKLIEKKV 368
            +  IEKLI++ +
Sbjct: 399 QLADIEKLIKRAL 411


>gi|262403377|ref|ZP_06079937.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC586]
 gi|262350876|gb|EEZ00010.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC586]
          Length = 464

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 171/391 (43%), Positives = 250/391 (63%), Gaps = 10/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG + R    R LIL PTRELAAQ+ DN   YG++  L+ A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANKVRALILTPTRELAAQIQDNVLIYGRHLPLSSAVVFGGVKVNPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C     A   KK A+L +L 
Sbjct: 181 NLLFSATFSAEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPAMLVKLA 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386
           IE+L +  +  +N  L+   P    P  K+D
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNQLPESKLD 386


>gi|229593097|ref|YP_002875216.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
 gi|229364963|emb|CAY53082.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 628

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 170/386 (44%), Positives = 245/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV D+F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A  S K A
Sbjct: 181 LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAA--SHKRA 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G+++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GSVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++K+   +GDL   +
Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381


>gi|152995016|ref|YP_001339851.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150835940|gb|ABR69916.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 463

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 165/370 (44%), Positives = 240/370 (64%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ D GY +P+ IQ + IP +L+  DV   AQTGTGKTA F LP+L
Sbjct: 5   MSFNKLGLSAPILKAIEDQGYTEPSAIQAQAIPAILEGQDVMAAAQTGTGKTAGFTLPLL 64

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            IL KG  A+    R L+L PTRELAAQVA++ + YG++ +L   ++ GG+    Q   L
Sbjct: 65  EILSKGENAQSNQVRALVLTPTRELAAQVAESVKNYGQHLSLKSTVVFGGVKINPQMMAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGAD+LI TPGR++D +N+  +  + +E+LV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 125 RRGADILIATPGRMMDLYNQKAVRFDKLEVLVLDEADRMLDMGFIHDIKKILAILPKKRQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V   ++TA ++E           +K  LL QL+
Sbjct: 185 NLLFSATFSPEIRQLAKGLVNNPIEISVTPRNATAVSVEQWLHPV--DKKRKTELLIQLI 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       ++F   K     +   LE  G    AIHGN  Q +R + L++FKEG I+++
Sbjct: 243 -ADGRWDQALVFSRTKHGANKITKQLEDAGIRASAIHGNKSQGARTRALADFKEGRIRIL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + HV NFD+P+ AE+Y+HRIGRTGRAG  GKA +LVA +++  + A
Sbjct: 302 VATDIAARGLDIEQLPHVVNFDLPDVAEDYVHRIGRTGRAGATGKAISLVAADELDQLRA 361

Query: 360 IEKLIEKKVD 369
           IE+L +K ++
Sbjct: 362 IERLTQKLIE 371


>gi|70733086|ref|YP_262859.1| DEAD-box ATP dependent DNA helicase [Pseudomonas fluorescens Pf-5]
 gi|68347385|gb|AAY94991.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           fluorescens Pf-5]
          Length = 622

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 171/386 (44%), Positives = 244/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV D+F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A  S K A
Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPA--SHKRA 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L+K G S  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++K+   +GDL   +
Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381


>gi|149375720|ref|ZP_01893489.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
 gi|149360122|gb|EDM48577.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
          Length = 441

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 166/368 (45%), Positives = 237/368 (64%), Gaps = 3/368 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS ++V A  D GY  P+PIQ K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSSLGLSEQLVRATADQGYETPSPIQAKAIPAVLSGRDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +     + PR LIL PTRELAAQV D+   Y +      A++ GG+    Q  KL 
Sbjct: 61  QRLAENPRTGKGPRVLILAPTRELAAQVHDSVALYSRYMPTKSAVVFGGVKINPQMMKLR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVL+ TPGR++D + +  +  N +EILV+DEADRMLDMGFI  I+ I +L+P  RQ 
Sbjct: 121 KGLDVLVATPGRLMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILALLPAKRQN 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT ++E++ ++E  L NP ++EV   ++ AE+I+          S+K ALL +L++
Sbjct: 181 LLFSATFSNEIRTLAEGLLDNPVQVEVAARNTAAESIKQSVYPV--DQSQKTALLSKLVR 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  ++F   K     L   LE+ G +  AIHGN  Q +R + L++FK+G ++++V
Sbjct: 239 D-NGWEQVLVFTRTKHGANRLTQKLERDGITAAAIHGNKSQGARTRALADFKQGEVRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV+ ++ K +  I
Sbjct: 298 ATDIAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADEGKMLAGI 357

Query: 361 EKLIEKKV 368
           E+LI+K++
Sbjct: 358 ERLIKKQL 365


>gi|237747736|ref|ZP_04578216.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
 gi|229379098|gb|EEO29189.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
          Length = 469

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 181/446 (40%), Positives = 273/446 (61%), Gaps = 36/446 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GLSP ++ A+ D GYV PTPIQ++ IPLVL+  DV G AQTGTGKTA + LPML  
Sbjct: 17  FEDFGLSPDILKALDDLGYVSPTPIQVQAIPLVLEGKDVMGAAQTGTGKTAGYSLPMLQS 76

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QV ++ ++Y K   +  A++ GG+   +Q  
Sbjct: 77  LLFSANTSMSPARHPVRALILVPTRELADQVFEDVKRYAKYTPVKSAVVFGGVDISSQTS 136

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++LI TPGR+LDH  +  + +++ +ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 137 ILRAGVEILIATPGRLLDHVQQKNVNLSHTQILVLDEADRMLDMGFLPDLQRIVNLLPKQ 196

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +++++K++ +F+++P  +EV   ++TAE ++        + S+K A ++ 
Sbjct: 197 RQNLLFSATFSNDIKKLARSFMKDPVTVEVARQNATAENVKQTVYRI--EESEKNAAVEH 254

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ ++  +  +IF N K     L   LE++G    AIHG+  Q  RM  L  FK G+I 
Sbjct: 255 LLKDRN-QEQVLIFSNTKAGASRLARQLERKGMKASAIHGDKTQAERMATLEAFKSGSID 313

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL I ++  V NFD+P  AE+Y+HRIGRTGRAG  G+A +L +++D + +
Sbjct: 314 ILVATDVAARGLHIEELPCVINFDLPFVAEDYVHRIGRTGRAGSKGEAISLYSEKDERLL 373

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKI-DIAQHNH----------ARKNNPIPQKSTGF 406
             IEKL ++++            PLEK+ D  +  H           ++ +  P KS G 
Sbjct: 374 KEIEKLTKRQL------------PLEKLTDFEREKHVSPETGGTAYGKRFDRSPYKSVGL 421

Query: 407 DRRKKNYSSQKSHIPL-----KESEK 427
           +++ K+    + ++P      KESEK
Sbjct: 422 EKKSKDPWFDQPYVPSATKSDKESEK 447


>gi|126664485|ref|ZP_01735469.1| DNA and RNA helicase [Marinobacter sp. ELB17]
 gi|126630811|gb|EBA01425.1| DNA and RNA helicase [Marinobacter sp. ELB17]
          Length = 444

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 166/368 (45%), Positives = 240/368 (65%), Gaps = 3/368 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V A LD GY  P+PIQ+K IP VL   DV   AQTGTGKTA FVLP+L
Sbjct: 1   MSFSSLGLSEPLVRATLDQGYETPSPIQLKAIPAVLAGKDVMAAAQTGTGKTAGFVLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +LE+     + PR LIL PTRELAAQV D+   Y +      A++ GG+    Q  KL 
Sbjct: 61  QMLEQNPRTGKGPRVLILTPTRELAAQVHDSVNLYSRYVPTRAAVVFGGVKINPQMMKLR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVL+ TPGR++D + +  +  N +E LV+DEADRMLDMGFI  I+ I +++P  RQ+
Sbjct: 121 KGLDVLVATPGRLMDLYQQNAVRFNEVEFLVLDEADRMLDMGFIRDIRKILAMLPAKRQS 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT ++E++ +++  L +P +I+V   ++TAE++           S+K ALL +L++
Sbjct: 181 LLFSATFSNEIRTLAKGLLNDPVQIDVAVRNTTAESVIQSVYPV--DQSQKTALLSKLVR 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             ++ +  ++F   K     L   L K G +  AIHGN  Q +R + L+ FK+G I+++V
Sbjct: 239 D-NSWEQVLVFTRTKHGANRLTEKLGKDGITAAAIHGNKSQGARTRALAEFKQGDIRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV+ +++  +  I
Sbjct: 298 ATDIAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADELSMLVGI 357

Query: 361 EKLIEKKV 368
           EKLI+K++
Sbjct: 358 EKLIKKQL 365


>gi|269961856|ref|ZP_06176213.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
 gi|269833434|gb|EEZ87536.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
          Length = 526

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 170/367 (46%), Positives = 235/367 (64%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G R R    R L+L PTRELAAQV +N   Y ++  LT A++ GG+    Q  +L
Sbjct: 61  ERLSNGPRVRSNQVRALVLTPTRELAAQVQENVFMYSRHLPLTSAVVFGGVKINPQMLRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR+LD +N+  +  + +E+LV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 RKGADVLVATPGRLLDLYNQNAVKFDQLEMLVLDEADRMLDMGFIRDIRKILDLLPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ +++  + NP  I VN  +STA T+E C     A   KK  +L +L+
Sbjct: 181 NLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQCIYP--ADVKKKAPMLVKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  K  ++F   K     L   L  Q  +  AIHGN  Q +R K L++FK G ++++
Sbjct: 239 KDGD-WKQVLVFTKTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV   +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFA 357

Query: 360 IEKLIEK 366
           IE+LI++
Sbjct: 358 IERLIQQ 364


>gi|296159168|ref|ZP_06841995.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295890729|gb|EFG70520.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 491

 Score =  327 bits (838), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 172/372 (46%), Positives = 240/372 (64%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+P ++ AV ++GY  PTPIQ + IP+VL   D+ G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N + Y K+  L  A++ GG+    Q++
Sbjct: 73  LLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSE 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 QLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L++P+ IEV   +STA  +    V   A+  K  A++Q 
Sbjct: 193 RQTLLFSATFSGEIKKLAATYLRDPQTIEVARSNSTATNVRQ-IVYEVAEGDKTGAVVQ- 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +  +K  I+FCN K     L  SLE+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 -LIRERGLKQVIVFCNSKIGASRLARSLERDGVIATAIHGDRSQNERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKKVD 369
             IEKLI++ ++
Sbjct: 370 ADIEKLIKRPLE 381


>gi|330501389|ref|YP_004378258.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
 gi|328915675|gb|AEB56506.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
          Length = 632

 Score =  327 bits (838), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 171/386 (44%), Positives = 244/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLSEALVRAIESAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTAGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L        + R   + PR L+L PTRELAAQV D+F+ Y ++     A + GG+   
Sbjct: 61  ERLFPAGHPDREQRHGPKQPRVLVLTPTRELAAQVHDSFKIYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L +G DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQVQALAKGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A  S K A
Sbjct: 181 LPAQRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAA--SHKRA 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +Q   +  ++F   K     L   L+K G    AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TQGAWEQVLVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             ++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 SKVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++K+   +GDL   +
Sbjct: 358 EKLLKSIERMTKQKIP--DGDLMGFD 381


>gi|153832249|ref|ZP_01984916.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
 gi|148871560|gb|EDL70415.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
          Length = 499

 Score =  327 bits (838), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 170/367 (46%), Positives = 235/367 (64%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G R R    R L+L PTRELAAQV +N   Y ++  LT A++ GG+    Q  +L
Sbjct: 61  ERLSNGPRVRSNQVRALVLTPTRELAAQVQENVFMYSRHLPLTSAVVFGGVKINPQMLRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR+LD +N+  +  + +E+LV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 RKGADVLVATPGRLLDLYNQNAVKFDQLEMLVLDEADRMLDMGFIRDIRKILDLLPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ +++  + NP  I VN  +STA T+E C     A   KK  +L +L+
Sbjct: 181 NLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQCIYP--ADVKKKAPMLVKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  K  ++F   K     L   L  Q  +  AIHGN  Q +R K L++FK G ++++
Sbjct: 239 KDGD-WKQVLVFTKTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV   +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFA 357

Query: 360 IEKLIEK 366
           IE+LI++
Sbjct: 358 IERLIQQ 364


>gi|330817865|ref|YP_004361570.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
 gi|327370258|gb|AEA61614.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
          Length = 485

 Score =  327 bits (838), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 177/431 (41%), Positives = 260/431 (60%), Gaps = 15/431 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+P ++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAPDILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+   +Q  
Sbjct: 73  LLPQANSSASPARHPVRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNSQMA 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  +++LV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKQ 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L NP+ IEV   ++TA  +    V   A+  K+ A+++ 
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLSNPQTIEVARSNATATNVTQV-VYEIAEGDKQAAVVK- 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++K  I+FCN K     L   LE+ G    AIHG+  Q  RM+ L  FK G ++
Sbjct: 251 -LIRDRSLKQVIVFCNSKIGASRLARQLERDGVVATAIHGDRSQNERMQALDAFKRGEVE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPL----EKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
             IEKLI++ +        +++ P+    E+ + ++ +  R  +  P++S G    + ++
Sbjct: 370 ADIEKLIKRDLPL---QPLAVDAPVRARQERGERSERSRDRDESRGPRRSHGHGGERTHH 426

Query: 414 SSQKSHIPLKE 424
              +   P+ E
Sbjct: 427 HHSRREAPVDE 437


>gi|254247597|ref|ZP_04940918.1| Helicase [Burkholderia cenocepacia PC184]
 gi|124872373|gb|EAY64089.1| Helicase [Burkholderia cenocepacia PC184]
          Length = 521

 Score =  327 bits (838), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 173/372 (46%), Positives = 240/372 (64%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+P ++ A+++ GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 36  FDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 95

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q+ 
Sbjct: 96  LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQSA 155

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 156 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 215

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +    V   A+  K+ A++ Q
Sbjct: 216 RQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKQAAVV-Q 273

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +  +K  I+FCN K     L  +LE+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 274 LLRDRG-LKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIE 332

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 333 ALVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 392

Query: 358 DAIEKLIEKKVD 369
             IEKLI++ +D
Sbjct: 393 ADIEKLIKRPLD 404


>gi|238028205|ref|YP_002912436.1| putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
 gi|237877399|gb|ACR29732.1| Putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
          Length = 480

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 171/369 (46%), Positives = 233/369 (63%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+P ++ A+ D GY KPTPIQ K IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAPDILKAIADQGYTKPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q  
Sbjct: 73  LLPQANTSASPARHPVRALILTPTRELADQVAANVHSYAKHTALRSAVVFGGVDMNPQMA 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  +++LV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKA 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L NP+ IEV   ++TA  +    V   A+  K+ A+++ 
Sbjct: 193 RQTLLFSATFSPEIKKLAATYLTNPQTIEVARSNATATNVTQ-IVYDIAEGDKQAAVVK- 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L     +K  I+FCN K     L   LE+ G    AIHG+  Q  RM+ L  FK G ++
Sbjct: 251 -LIRDRALKQVIVFCNSKIGASRLARLLERDGVVATAIHGDRSQNERMQALEAFKRGEVE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEK 366
             IEKLI++
Sbjct: 370 ADIEKLIKR 378


>gi|269967184|ref|ZP_06181249.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|269828174|gb|EEZ82443.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 522

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 169/367 (46%), Positives = 235/367 (64%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ K IP +L+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G R R    R LIL PTRELAAQV +N   Y ++  L  A++ GG+    Q ++L
Sbjct: 61  ERLSNGPRVRANQVRALILTPTRELAAQVQENVFMYSRHLPLNSAVVFGGVKINPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +N+  +  + +E+LV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ +++  + NP  I VN  +STA T+E       A   KK  +L +L+
Sbjct: 181 NLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYP--ADVKKKAPMLVKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  K  ++F   K     L   L +Q     AIHGN  Q +R K L++FK G I+++
Sbjct: 239 KDGD-WKQVLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV   +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFA 357

Query: 360 IEKLIEK 366
           IE+LI++
Sbjct: 358 IERLIQE 364


>gi|152981148|ref|YP_001352987.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151281225|gb|ABR89635.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 448

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 172/374 (45%), Positives = 240/374 (64%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL+  +V AV ++GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFTDLGLAEGIVRAVTESGYTNPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILEK-----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L         A  + P R L+L PTRELAAQV ++   YGK  NL  A++ GG+    
Sbjct: 61  HRLATSGTPHASASAQRPIRALVLTPTRELAAQVEESVRTYGKYLNLNSAVIFGGVGINP 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q K L+ G D+L+ TPGR+LDH  +G + +N+I+ILV+DEADRMLDMGFI  I+ + + +
Sbjct: 121 QIKMLKHGVDILVATPGRLLDHMQQGTVNLNHIQILVLDEADRMLDMGFIKDIRRVLAAL 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT ++E++ +++  L +P  IEV   +ST E IE           KK  +
Sbjct: 181 PKNRQNLLFSATFSNEIKALADGLLNSPATIEVARRNSTVEIIEQKIHPV--DRDKKHPM 238

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L++S +     ++F   K     L   LEK G S  AIHGN  Q +R + LS FK+G
Sbjct: 239 LAHLIKS-NNWSQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTRALSEFKDG 297

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           ++Q++VA+D+AARG+DI  + HV N+D+PN  E+Y+HRIGRTGRAG  G+A +LV  +++
Sbjct: 298 SLQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEL 357

Query: 355 KHIDAIEKLIEKKV 368
           + +  IEKLI++K+
Sbjct: 358 EMLKDIEKLIKRKL 371


>gi|107023254|ref|YP_621581.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
 gi|116690337|ref|YP_835960.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|170733675|ref|YP_001765622.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|105893443|gb|ABF76608.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
           1054]
 gi|116648426|gb|ABK09067.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           HI2424]
 gi|169816917|gb|ACA91500.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 520

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 173/372 (46%), Positives = 240/372 (64%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+P ++ A+++ GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 35  FDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 94

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q+ 
Sbjct: 95  LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQSA 154

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 155 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 214

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +    V   A+  K+ A++ Q
Sbjct: 215 RQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKQAAVV-Q 272

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +  +K  I+FCN K     L  +LE+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 273 LLRDRG-LKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIE 331

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 332 ALVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 391

Query: 358 DAIEKLIEKKVD 369
             IEKLI++ +D
Sbjct: 392 ADIEKLIKRPLD 403


>gi|117919262|ref|YP_868454.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117611594|gb|ABK47048.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 578

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 179/424 (42%), Positives = 258/424 (60%), Gaps = 17/424 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV + GY  P+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG +A+    R L+L PTRELAAQV+++ E YGK   L  A++ GG+P   Q +KL
Sbjct: 61  ELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR+LD   +  +  N +E+LV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 RHGVDVLVATPGRLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++++++  +  P  I V   ++ A T++          ++K ALL QL+
Sbjct: 181 NLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPV--DKNQKSALLIQLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +D  +  ++F   K     L  SL +   S  AIHGN  Q +R K L++FK G ++++
Sbjct: 239 KQED-WQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+ K +  
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLVSSEETKLLRD 357

Query: 360 IEKLIEKKVDWLNGD---------LSSLNPPLEKIDI----AQHNHARKNNPIPQKSTGF 406
           IE+LI + ++    +          S+LN   ++  I    +Q  H     P P+  +G 
Sbjct: 358 IERLINRVLERQEVEGFSPVHTLPESTLNAHGKENKIKAVASQRKHRSAGKPAPRAGSGR 417

Query: 407 DRRK 410
           D RK
Sbjct: 418 DGRK 421


>gi|330967974|gb|EGH68234.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 629

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 171/406 (42%), Positives = 255/406 (62%), Gaps = 15/406 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A +  K +
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHARKN 396
            K + +IE++ ++K+   D +  D++++    EK ++ +    RK+
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDITAVE--AEKPEVRERPDVRKS 401


>gi|254515124|ref|ZP_05127185.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium NOR5-3]
 gi|219677367|gb|EED33732.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium NOR5-3]
          Length = 444

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 171/371 (46%), Positives = 241/371 (64%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGLS +++ AV   GY + TPIQ K IPLVLQ HD+   AQTGTGKTA F LP+L
Sbjct: 1   MLFKDLGLSAELLRAVEKQGYDEATPIQQKAIPLVLQGHDLLAGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L+     V+   P+ L+L PTRELAAQV ++   YG+      A++ GG+    Q +K
Sbjct: 61  QRLQSKYQDVQKSFPKVLVLTPTRELAAQVHESVRDYGRYLPFRSAVIFGGVSINPQKQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+++ TPGR+LDH  +  + ++ IEILV+DEADRMLDMGFI  I+ +  ++P  R
Sbjct: 121 LIKGVDIVVATPGRLLDHVQQRSIDLSRIEILVLDEADRMLDMGFIHDIRRVMKVIPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT + E++K++  FL+ P++I+V TP +TA T+    V    +  K+  L QQ+
Sbjct: 181 QTLLFSATFSSEIKKLASEFLEQPEQIQV-TPQNTATTLVSQLVYPVDKNRKRELLSQQI 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  +IF   K     L   L+K G S  AIHGN  Q +R + L +FK GTI+ 
Sbjct: 240 --GEGNWQQVLIFTRTKHGANKLAEQLDKDGISAAAIHGNKSQGARTRALGDFKAGTIRA 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV NF++PN  E+YIHRIGRT RAG+ G A +LV  +++K + 
Sbjct: 298 LVATDIAARGIDIDKLPHVVNFELPNVPEDYIHRIGRTARAGQQGHAISLVCVDELKLLR 357

Query: 359 AIEKLIEKKVD 369
            IEKL+ K ++
Sbjct: 358 DIEKLLGKDIE 368


>gi|182413406|ref|YP_001818472.1| DEAD/DEAH box helicase domain-containing protein [Opitutus terrae
           PB90-1]
 gi|177840620|gb|ACB74872.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
          Length = 403

 Score =  327 bits (837), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 169/368 (45%), Positives = 234/368 (63%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL   +  AV    YV+PTPIQ + IP+VL+  DV G AQTGTGKTA+F LP++  
Sbjct: 5   FSKLGLQDALAYAVQKMDYVEPTPIQAQAIPIVLKGGDVIGSAQTGTGKTAAFALPIIQR 64

Query: 63  LEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   GR R      LILEPTRELA QV + F K+ K  +L V ++ GG+ +  Q   L+R
Sbjct: 65  LSTHGRLRC-----LILEPTRELALQVEEAFHKFAKFTDLRVTIVYGGVGYGKQTSDLKR 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+L  TPGR+LDH  +G   + ++EILV+DE DRMLDMGF+P ++ I    P  RQTL
Sbjct: 120 GMDILAATPGRLLDHLGQGNCSLEDVEILVLDEVDRMLDMGFLPDVRKIVQRCPKARQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT+  EL++++   L NP ++E+    S AET+ H F    A  S+K  LLQ LL+ 
Sbjct: 180 FFSATLPPELEQLAGWALHNPTKVEIGRVRSPAETVSHGFYPVVA--SQKFDLLQLLLER 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  K+ +IFC  +     + H L+ +G +V  +H +  QR R++ L  FK G  +++VA
Sbjct: 238 TE-FKSVLIFCRTRMGADRIAHRLKTKGHTVGVMHSDRSQRERIEALDGFKSGKFEVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV N+DVP   E+Y+HRIGRTGRA   G AFTLV +ED++   +IE
Sbjct: 297 TDIAARGLDIAGVSHVINYDVPENPEDYVHRIGRTGRAHHTGDAFTLVTEEDVRDARSIE 356

Query: 362 KLIEKKVD 369
           + +   V+
Sbjct: 357 RYMGMAVE 364


>gi|83647393|ref|YP_435828.1| superfamily II DNA/RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83635436|gb|ABC31403.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 453

 Score =  327 bits (837), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 163/369 (44%), Positives = 241/369 (65%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  ++ A+ + GY  P+PIQ++ IP+VL+  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFASLGLSAPILDAISEQGYASPSPIQLQAIPVVLEGKDVMAAAQTGTGKTAAFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L KG RAR    R LIL PTRELAAQV +    Y     L   ++ GG+    Q  +L
Sbjct: 61  ERLSKGDRARSNQARALILTPTRELAAQVGECVSIYSSKLPLRSTVVFGGVKINPQMMRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DV++ TPGR+LD +N+  +   ++E+LV+DEADRMLDMGFI  I+ I  ++P  RQ
Sbjct: 121 RRGVDVIVATPGRLLDLYNQNAVRFQDLEVLVLDEADRMLDMGFIHDIRKILDILPKRRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +++++K+++  + NP  I V+ P++TA+T++           +K ALL QL+
Sbjct: 181 NLMFSATFSNDIRKLAKELVNNPVEISVSPPNTTAKTVKQWIHPV--DKKQKSALLTQLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +     ++F   K     L   L  +G +  AIHG+  Q +R K L++FK G++Q++
Sbjct: 239 RD-NNWDQALVFSRTKHGANRLTRQLCAKGINAAAIHGDKSQNARTKALADFKTGSVQIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V NFD+P  AE+Y+HRIGRTGRAG  G+A +LV+ ++ K +  
Sbjct: 298 VATDIAARGIDIDQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGQAVSLVSADEFKLLAD 357

Query: 360 IEKLIEKKV 368
           IE+LI+K++
Sbjct: 358 IERLIQKRL 366


>gi|312963578|ref|ZP_07778059.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
 gi|311282087|gb|EFQ60687.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
          Length = 628

 Score =  327 bits (837), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 169/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV D+F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A  S K +
Sbjct: 181 LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAA--SHKRS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-THGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G+++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GSVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++K+   +GDL   +
Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381


>gi|91775307|ref|YP_545063.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|91775451|ref|YP_545207.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|91709294|gb|ABE49222.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|91709438|gb|ABE49366.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|167042456|gb|ABZ07182.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
           HF4000_ANIW133B20]
          Length = 515

 Score =  327 bits (837), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 170/374 (45%), Positives = 245/374 (65%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DLGL+  ++ A+ D GY  PTPIQ + IPLVL   D+   AQTGTGKTA F LP+L
Sbjct: 12  LQFSDLGLAEPILRAIADTGYTHPTPIQAQAIPLVLNGGDLLAGAQTGTGKTAGFTLPVL 71

Query: 61  TILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L     +V+   PR LIL PTRELAAQV ++ + YGK+  LT  ++ GG+    Q ++
Sbjct: 72  HLLHAKPVKVKPGQPRCLILTPTRELAAQVEESVQTYGKHLKLTSMVMFGGVGINPQIER 131

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++  D+L+ TPGR+LDH  +  + ++ IEILV+DEADRMLDMGFI  I+ + +L+P  R
Sbjct: 132 LKKPLDILVATPGRLLDHAAQKTIDLSAIEILVLDEADRMLDMGFIRDIKRVLALLPKKR 191

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +DE++++++  L NP  +EV   ++ +E +E   V   +Q  K+  L+  L
Sbjct: 192 QNLLFSATFSDEIKELADGLLHNPGFVEVARRNTASELVEQA-VHLVSQGHKRD-LVAHL 249

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++  D  K  +IF   K     L   L K G +  AIHGN  Q +R K L+ FK GT+ +
Sbjct: 250 IRHHD-WKQVLIFTRTKHGANRLAEKLSKDGIAAAAIHGNKSQSARTKALAEFKNGTLPV 308

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV  E+IK + 
Sbjct: 309 LVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGCSGAAVSLVDGEEIKLLK 368

Query: 359 AIEKLIEKKVDWLN 372
            IE+LI++++  L+
Sbjct: 369 GIERLIKREIPRLD 382


>gi|167569331|ref|ZP_02362205.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786]
          Length = 411

 Score =  326 bits (836), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 176/386 (45%), Positives = 240/386 (62%), Gaps = 10/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+ +++ A+ D GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q  
Sbjct: 73  LLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG +VLI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 ELRRGVEVLIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   ++TA  +    V   A+  K+ A+++ 
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNATATNVTQ-IVYDVAEGDKQAAVVK- 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L     +K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 -LIRDRALKQVIVFCNSKIGASRLARQIERDGIVASAIHGDRSQSERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIVELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKK--VDWLNGDLSSLNPP 381
             IEKLI++   ++ L  DL    PP
Sbjct: 370 ADIEKLIKRALPLEALELDLPRHRPP 395


>gi|254286694|ref|ZP_04961649.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
 gi|150423278|gb|EDN15224.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
          Length = 464

 Score =  326 bits (836), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 170/391 (43%), Positives = 249/391 (63%), Gaps = 10/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG + R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C     A   KK  +L +L+
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPDMLVKLV 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386
           IE+L +  +  +N  L+   P    P  K+D
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNLLPESKLD 386


>gi|320330891|gb|EFW86865.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 625

 Score =  326 bits (836), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 168/382 (43%), Positives = 244/382 (63%), Gaps = 12/382 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A +  K +
Sbjct: 181 LPAKRQNLLFSATFSNDITSLASKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDL 375
            K + +IE++ ++K+   +GDL
Sbjct: 358 EKLLKSIERMTKQKI--ADGDL 377


>gi|109898452|ref|YP_661707.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c]
 gi|109700733|gb|ABG40653.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 435

 Score =  326 bits (836), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 162/367 (44%), Positives = 236/367 (64%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLSP ++ AV   GY  P+PIQ + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFADLGLSPAILSAVTAKGYTDPSPIQAQAIPAILEGKDIMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +G  AR    R L+L PTRELAAQVA +   YGK+  L  A++ GG+    Q  KL
Sbjct: 61  ELLNRGTHARGNQARALVLTPTRELAAQVAASVVDYGKDLPLRSAVVFGGVGINPQMIKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD +N+  +  +++EILV+DEADRMLDMGFI  I+ +  L+P  RQ
Sbjct: 121 RKGVDILVATPGRLLDLYNQNAVRFDDLEILVLDEADRMLDMGFIHDIKKVLKLLPTKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +D+++ +++  + NP  + V+ P++T E +E  FV    +  K  AL++ + 
Sbjct: 181 NLLFSATFSDDIRALAKGLVNNPVEVSVSPPNTTVEAVEQ-FVCPVDKNQKTPALIRMI- 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  ++F   K     +   LE +G +  AIHGN  Q +R K L+ FK G ++ +
Sbjct: 239 -KDNDWQQVLVFSRTKHGANRIAKQLEARGITSAAIHGNKSQGARTKALAEFKSGKVRAL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+D+PN AE+Y+HRIGRTGRAG  G+A +LV  ++   +  
Sbjct: 298 VATDIAARGLDISQLPQVVNYDLPNVAEDYVHRIGRTGRAGASGQAISLVTADEFSLLAD 357

Query: 360 IEKLIEK 366
           IE+  ++
Sbjct: 358 IERFTKQ 364


>gi|320322003|gb|EFW78099.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 625

 Score =  326 bits (836), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 168/382 (43%), Positives = 244/382 (63%), Gaps = 12/382 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A +  K +
Sbjct: 181 LPAKRQNLLFSATFSNDITSLASKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDL 375
            K + +IE++ ++K+   +GDL
Sbjct: 358 EKLLKSIERMTKQKI--ADGDL 377


>gi|91782534|ref|YP_557740.1| putative ATP-dependent RNA helicase 2 [Burkholderia xenovorans
           LB400]
 gi|91686488|gb|ABE29688.1| Putative ATP-dependent RNA helicase 2 [Burkholderia xenovorans
           LB400]
          Length = 491

 Score =  326 bits (836), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 172/372 (46%), Positives = 240/372 (64%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+P ++ AV ++GY  PTPIQ + IP+VL   D+ G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N + Y K+  L  A++ GG+    Q++
Sbjct: 73  LLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSE 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 QLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L++P+ IEV   +STA  +    V   A+  K  A++Q 
Sbjct: 193 RQTLLFSATFSGEIKKLAATYLRDPQTIEVARSNSTATNVRQ-IVYEVAEGDKTGAVVQ- 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +  +K  I+FCN K     L  SLE+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 -LIRERGLKQVIVFCNSKIGASRLSRSLERDGVIATAIHGDRSQNERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKKVD 369
             IEKLI++ ++
Sbjct: 370 ADIEKLIKRPLE 381


>gi|120556730|ref|YP_961081.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120326579|gb|ABM20894.1| DEAD/DEAH box helicase domain protein [Marinobacter aquaeolei VT8]
          Length = 443

 Score =  326 bits (836), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 175/400 (43%), Positives = 246/400 (61%), Gaps = 5/400 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS ++V A  D GY  P+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSSLGLSEQLVRATADQGYETPSPIQQQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +     + PR LIL PTRELAAQV D+   Y K      A++ GG+    Q  KL 
Sbjct: 61  QRLAENPRTGKGPRALILTPTRELAAQVHDSVNLYSKYVPTKAAVVFGGVKINPQMMKLR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVL+ TPGR++D + +  +  N +EILV+DEADRMLDMGFI  I+ I +L+P  RQ 
Sbjct: 121 KGLDVLVATPGRLMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILALLPAKRQN 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT ++E++ +++  L NP ++EV   ++TAE ++          S+K ALL +L++
Sbjct: 181 LLFSATFSNEIRTLAQGLLDNPVQVEVAARNTTAEKVKQSVYPV--DQSQKTALLSKLVR 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     ++F   K     L   LEK G +  AIHGN  Q +R + L++FK G ++++V
Sbjct: 239 D-NAWDQVLVFTRTKHGANRLTQKLEKDGITAAAIHGNKSQGARTRALADFKAGEVRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV+ ++ K +  I
Sbjct: 298 ATDIAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADEGKLLAGI 357

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           EKLI+K++    + G     N PL+    A  + AR   P
Sbjct: 358 EKLIKKQLPRKEVEGFEPKNNLPLKPKAKADPSKARNRRP 397


>gi|254225215|ref|ZP_04918828.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
 gi|125622314|gb|EAZ50635.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
          Length = 464

 Score =  326 bits (835), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 170/391 (43%), Positives = 249/391 (63%), Gaps = 10/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG + R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C     A   KK  +L +L+
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPDMLVKLV 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386
           IE+L +  +  +N  L+   P    P  K+D
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNQLPESKLD 386


>gi|221065648|ref|ZP_03541753.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
 gi|220710671|gb|EED66039.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
          Length = 473

 Score =  326 bits (835), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 173/384 (45%), Positives = 244/384 (63%), Gaps = 8/384 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L+  +  AV D GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L  
Sbjct: 5   FSNLHLAEPLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQR 64

Query: 63  LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L +      +  R P R L+L PTRELA QVA     Y K+  L   ++ GG+  + Q  
Sbjct: 65  LMRHENASASPARHPVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKPQTL 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L++G +VL+ TPGR+LDH     +++N +E +V+DEADRMLD+GF+P +Q I S +P +
Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKS 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R TLLFSAT + E+++++ ++LQ+P  IEV  P+ TA T+E  F    +   K+ A ++ 
Sbjct: 185 RTTLLFSATFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQRFYKV-SDDDKRYA-IRS 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+ +D ++   IF N K     L  +LE+ G    A+HG+  Q  R+K L  FK G + 
Sbjct: 243 VLKERD-IRQAFIFSNSKLGCARLTRALERDGLRAGALHGDKSQDERLKALEAFKAGEVD 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+V +D+AARGLDI DV  VFN+DVP  AE+Y+HRIGRTGRAG  G A TLV   D +++
Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTDHDSRNV 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPP 381
             IEKLI+KK+D     +  L PP
Sbjct: 362 ADIEKLIKKKIDVEPAPMLDLRPP 385


>gi|229526174|ref|ZP_04415578.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae bv. albensis
           VL426]
 gi|229336332|gb|EEO01350.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae bv. albensis
           VL426]
          Length = 464

 Score =  326 bits (835), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 170/391 (43%), Positives = 249/391 (63%), Gaps = 10/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG + R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C     A   KK  +L +L+
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPDMLVKLV 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386
           IE+L +  +  +N  L+   P    P  K+D
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNLLPESKLD 386


>gi|229527823|ref|ZP_04417214.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 12129(1)]
 gi|229334185|gb|EEN99670.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 12129(1)]
          Length = 464

 Score =  326 bits (835), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 170/391 (43%), Positives = 249/391 (63%), Gaps = 10/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG + R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C     A   KK  +L +L+
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPDMLVKLV 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386
           IE+L +  +  +N  L+   P    P  K+D
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNQLPESKLD 386


>gi|167562078|ref|ZP_02354994.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis EO147]
          Length = 408

 Score =  326 bits (835), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 177/397 (44%), Positives = 244/397 (61%), Gaps = 22/397 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+ +++ A+ D GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q  
Sbjct: 73  LLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG +VLI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 ELRRGVEVLIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   ++TA  +    V   A+  K+ A+++ 
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNATATNVTQ-IVYDVAEGDKQAAVVK- 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L     +K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 -LIRDRALKQVIVFCNSKIGASRLARQIERDGIVASAIHGDRSQSERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIVELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLE--KIDIAQHNH 392
             IEKLI++ +            PLE  ++D+ +H H
Sbjct: 370 ADIEKLIKRAL------------PLEALELDLPRHRH 394


>gi|153801601|ref|ZP_01956187.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
 gi|124122857|gb|EAY41600.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
          Length = 464

 Score =  326 bits (835), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 170/391 (43%), Positives = 249/391 (63%), Gaps = 10/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG + R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C     A   KK  +L +L+
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPDMLVKLV 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386
           IE+L +  +  +N  L+   P    P  K+D
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNLLPESKLD 386


>gi|319944378|ref|ZP_08018652.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
 gi|319742339|gb|EFV94752.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
          Length = 546

 Score =  326 bits (835), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 167/372 (44%), Positives = 237/372 (63%), Gaps = 7/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D GL P V+ AV  AGY KPTPIQ K IP+V+  HDV   AQTGTGKTA F LP++ +
Sbjct: 20  FSDFGLHPDVLKAVTAAGYTKPTPIQAKAIPVVMAGHDVMAAAQTGTGKTAGFALPIINV 79

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L    +    P     R LI+ PTRELA Q+ DN + Y +   L  A + GG+  + Q  
Sbjct: 80  LMPSASHSASPARHPVRALIIAPTRELADQIHDNVKTYIQFTPLRSAAVFGGVDMQPQTN 139

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++LI TPGR+LDH  +  + ++ +++LV+DEADRMLDMGF+P IQ I +L+   
Sbjct: 140 ALRAGVEILIATPGRLLDHVQQKSVNLSQVQLLVLDEADRMLDMGFLPDIQRIINLLNPR 199

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ L+FSAT +DE++K+++ FL  PK IEV  P++ AE +E       ++  K+ A+   
Sbjct: 200 RQNLMFSATFSDEIRKLAKRFLNEPKLIEVARPNTLAENVEQTVYHVPSEDLKRDAV--G 257

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +  ++  I+F N K     L   L+K+GF   AIHG+  Q+ R+K L  FK G I+
Sbjct: 258 ALIRERGIEQVIVFSNTKIGAGRLARHLQKEGFLAEAIHGDKSQQERLKTLDGFKAGEIK 317

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+D+P+  E+Y+HRIGRTGRAG  G A +L+   D K +
Sbjct: 318 VLVATDVAARGLDIAELPAVINYDLPHSPEDYVHRIGRTGRAGASGMALSLMVDHDQKAL 377

Query: 358 DAIEKLIEKKVD 369
             IEKL ++K+D
Sbjct: 378 AEIEKLTKRKLD 389


>gi|262192111|ref|ZP_06050273.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae CT 5369-93]
 gi|262032022|gb|EEY50598.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae CT 5369-93]
          Length = 464

 Score =  326 bits (835), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 170/391 (43%), Positives = 249/391 (63%), Gaps = 10/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG + R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C     A   KK  +L +L+
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPDMLVKLV 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386
           IE+L +  +  +N  L+   P    P  K+D
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNLLPESKLD 386


>gi|261212630|ref|ZP_05926914.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC341]
 gi|260837695|gb|EEX64372.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC341]
 gi|327485418|gb|AEA79824.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae LMA3894-4]
          Length = 464

 Score =  326 bits (835), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 170/391 (43%), Positives = 249/391 (63%), Gaps = 10/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG + R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C     A   KK  +L +L+
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPDMLVKLV 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386
           IE+L +  +  +N  L+   P    P  K+D
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNQLPESKLD 386


>gi|71736442|ref|YP_272752.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298485028|ref|ZP_07003125.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|71556995|gb|AAZ36206.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298160438|gb|EFI01462.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 625

 Score =  325 bits (834), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A +  K +
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++K+   +GDL   +
Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381


>gi|229514699|ref|ZP_04404160.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TMA 21]
 gi|229348679|gb|EEO13637.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TMA 21]
          Length = 464

 Score =  325 bits (834), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 170/391 (43%), Positives = 249/391 (63%), Gaps = 10/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG + R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C     A   KK  +L +L+
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPDMLVKLV 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386
           IE+L +  +  +N  L+   P    P  K+D
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNLLPESKLD 386


>gi|153825002|ref|ZP_01977669.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
 gi|149741327|gb|EDM55361.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
          Length = 464

 Score =  325 bits (834), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 170/391 (43%), Positives = 249/391 (63%), Gaps = 10/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG + R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C     A   KK  +L +L+
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPDMLVKLV 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386
           IE+L +  +  +N  L+   P    P  K+D
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNLLPESKLD 386


>gi|237798154|ref|ZP_04586615.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021006|gb|EGI01063.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 629

 Score =  325 bits (834), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 169/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A +  K +
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  +IF   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TVGAWEQVLIFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++K+   +GDL   +
Sbjct: 358 EKLLKSIERMTKQKIP--DGDLMGFD 381


>gi|229522888|ref|ZP_04412302.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TM 11079-80]
 gi|229340105|gb|EEO05113.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TM 11079-80]
          Length = 464

 Score =  325 bits (834), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 170/391 (43%), Positives = 249/391 (63%), Gaps = 10/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG + R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C     A   KK  +L +L+
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPDMLVKLV 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVMNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386
           IE+L +  +  +N  L+   P    P  K+D
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNQLPESKLD 386


>gi|28872183|ref|NP_794802.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213971879|ref|ZP_03399980.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           T1]
 gi|301385283|ref|ZP_07233701.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato Max13]
 gi|28855437|gb|AAO58497.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213923363|gb|EEB56957.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           T1]
 gi|331015971|gb|EGH96027.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 629

 Score =  325 bits (834), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A +  K +
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++K+   +GDL   +
Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381


>gi|330878076|gb|EGH12225.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 629

 Score =  325 bits (834), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A +  K +
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++K+   +GDL   +
Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381


>gi|119477017|ref|ZP_01617298.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
 gi|119449824|gb|EAW31061.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
          Length = 431

 Score =  325 bits (834), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 166/365 (45%), Positives = 237/365 (64%), Gaps = 4/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  ++ AV D GY  P+PIQ + IP V+   DV   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLSAPILDAVADQGYDTPSPIQAQAIPAVIGGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L  G+ A+    R LIL PTRELAAQV ++   YGKN  L  A++ GG+    Q  KL
Sbjct: 61  ELLIPGKLAQANQARVLILTPTRELAAQVGESVATYGKNLPLRSAVVFGGVKINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DVL+ TPGR+LD +N+  +  +++E+LV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 RQGVDVLVATPGRLLDLYNQRAVKFDHLEVLVLDEADRMLDMGFIHDIKKILAVLPKKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +++++ +++  + NP  I V+  ++T E+++H         ++K  LL  L+
Sbjct: 181 NLLFSATFSNDIRGLAKGLVNNPVEISVSPANTTVESVQHWIYPV--DKNQKSKLLIHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q  +     ++F   K     L   L+  G +  AIHGN  Q +R K L++FK G +Q++
Sbjct: 239 QD-NQWSQVLVFSRTKHGANKLAKQLDGAGINAAAIHGNKSQGARTKALADFKGGKVQVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ ++ K +  
Sbjct: 298 VATDIAARGLDIEQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVSADEFKQLSD 357

Query: 360 IEKLI 364
           IE+LI
Sbjct: 358 IERLI 362


>gi|330984676|gb|EGH82779.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 625

 Score =  325 bits (834), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A +  K +
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++K+   +GDL   +
Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381


>gi|330899330|gb|EGH30749.1| helicase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 629

 Score =  325 bits (834), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A +  K +
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++K+   +GDL   +
Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381


>gi|330886235|gb|EGH20136.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. mori str.
           301020]
          Length = 625

 Score =  325 bits (834), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A +  K +
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVSRLAANH--KRS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++K+   +GDL   +
Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381


>gi|330951359|gb|EGH51619.1| helicase [Pseudomonas syringae Cit 7]
          Length = 629

 Score =  325 bits (834), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A +  K +
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++K+   +GDL   +
Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381


>gi|302063416|ref|ZP_07254957.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato K40]
          Length = 629

 Score =  325 bits (834), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A +  K +
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++K+   +GDL   +
Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381


>gi|289647882|ref|ZP_06479225.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 625

 Score =  325 bits (834), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A +  K +
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++K+   +GDL   +
Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381


>gi|302186251|ref|ZP_07262924.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas
           syringae pv. syringae 642]
          Length = 629

 Score =  325 bits (834), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A +  K +
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++K+   +GDL   +
Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381


>gi|153215146|ref|ZP_01949844.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
 gi|124114870|gb|EAY33690.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
          Length = 464

 Score =  325 bits (834), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 170/391 (43%), Positives = 249/391 (63%), Gaps = 10/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG + R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRAYQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C     A   KK  +L +L+
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPDMLVKLV 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386
           IE+L +  +  +N  L+   P    P  K+D
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNQLPESKLD 386


>gi|317052319|ref|YP_004113435.1| DEAD/DEAH box helicase domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316947403|gb|ADU66879.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum
           S5]
          Length = 457

 Score =  325 bits (834), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 176/420 (41%), Positives = 259/420 (61%), Gaps = 18/420 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGLS  ++ AV   GY +PTP+Q + IP +LQ  D+   AQTGTGKTA F LPML
Sbjct: 1   MLFSDLGLSAPILRAVAAEGYTQPTPVQQQAIPAILQGRDIQAGAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ILE+   R R   R LIL PTRELAAQV ++   YGK+ +L  A++ GG+    Q   L
Sbjct: 61  EILERQAIRGRRHVRALILTPTRELAAQVEESVRTYGKHLSLKSAVIFGGVAMGPQLANL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+++ TPGR+LDH  +  + ++ +E LV+DEADRMLDMGFI  I+ + +L+P  RQ
Sbjct: 121 RRGVDIVVATPGRLLDHVQQKSIDLSKVEFLVLDEADRMLDMGFIHDIRKVLALLPKERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E+ +++ +F+++P ++EV   ++ AET++   V       +K  LL +L+
Sbjct: 181 NLLFSATFSREITELASSFMKDPVQVEVARRNTAAETVDQ--VVHLVDRERKRELLSKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+   +  ++F   K     L   LEK G    AIHGN  Q +R K L++FK+G ++++
Sbjct: 239 -SEGKWQQVLVFTRTKHGANRLAQQLEKDGIHSAAIHGNKSQSARTKALADFKKGQVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++ HV NF++PN  E+Y+HRIGRTGRAG  GKA +LV  ++ + +  
Sbjct: 298 VATDIAARGLDIDELPHVVNFELPNVPEDYVHRIGRTGRAGNCGKACSLVCVDEKQLLKG 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNH------------ARKNNPIPQKSTG 405
           IE L+++ +  + + G     + P E I   ++N             A+     P  STG
Sbjct: 358 IEGLLKRDIPQEHIKGFEPDPSIPAEPIQNGRNNRQGQGRARSGAQPAKSARAFPSTSTG 417


>gi|269469155|gb|EEZ80700.1| ATP-dependent RNA helicase RhlE [uncultured SUP05 cluster
           bacterium]
          Length = 434

 Score =  325 bits (834), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 164/370 (44%), Positives = 244/370 (65%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ AV   GY KP+PIQ K+IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MGFSKLGLSDSILKAVKQQGYDKPSPIQEKSIPIVLDGKDLMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG+       RTLIL PTRELAAQV D+   YGK+  L   ++ GG+    Q KKL
Sbjct: 61  QLLSKGKPTNSNQVRTLILTPTRELAAQVQDSVATYGKHLPLKSTVVFGGVKINPQMKKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD +++  +  + +EI+V DEADRMLDMGFI  I+ I  ++P  RQ
Sbjct: 121 RGGVDILVATPGRLLDLYSQNAVKFDQLEIIVFDEADRMLDMGFIHDIKRILKVLPPKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT +DE++K++++ + NP  +     ++T ++++          SKK ALL +L+
Sbjct: 181 TLMFSATFSDEIRKLAKSLVHNPVEVSTTPRNTTVKSVKQWIHPV--DKSKKQALLTKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +    ++F   K     +   L K+G +  AIHGN  Q +R + L++FK+G + ++
Sbjct: 239 KDH-SWYQVLVFSRTKHGANRIATQLGKRGITAAAIHGNKSQGARTRALADFKDGKVNVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI ++ HV NFD+P+  E+Y+HRIGRTGRAG  G+A +LV+ +++K +  
Sbjct: 298 VATDIAARGIDIIELPHVVNFDLPHVPEDYVHRIGRTGRAGSKGEAISLVSADEVKQLFD 357

Query: 360 IEKLIEKKVD 369
           IE+LI+ K+D
Sbjct: 358 IERLIQNKLD 367


>gi|153829646|ref|ZP_01982313.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 623-39]
 gi|148874874|gb|EDL73009.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 623-39]
          Length = 464

 Score =  325 bits (833), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 170/391 (43%), Positives = 249/391 (63%), Gaps = 10/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG + R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C     A   KK  +L +L+
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPDMLVKLV 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386
           IE+L +  +  +N  L+   P    P  K+D
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNLLPESKLD 386


>gi|325273080|ref|ZP_08139385.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
 gi|324101781|gb|EGB99322.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
          Length = 630

 Score =  325 bits (833), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 170/386 (44%), Positives = 245/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV D+F+ Y ++  L  A + GG+   
Sbjct: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + +G DVL+  PGR+LD   +GK+ + ++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  +++  L NP+RIEV  P++T E IE       A  S K A
Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPA--SHKRA 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   LEK G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TLGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            +++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A ++VA ++
Sbjct: 298 NSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++  +++   +GDL   +
Sbjct: 358 EKLLKSIERVTRQRIP--DGDLMGFD 381


>gi|188591276|ref|YP_001795876.1| ATP-dependent RNA helicase hydrolase [Cupriavidus taiwanensis LMG
           19424]
 gi|170938170|emb|CAP63156.1| ATP-dependent RNA helicase hydrolase [Cupriavidus taiwanensis LMG
           19424]
          Length = 516

 Score =  325 bits (833), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 167/378 (44%), Positives = 243/378 (64%), Gaps = 12/378 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY  PTPIQ + IP +L+  D+   AQTGTGKTA F LPML
Sbjct: 1   MSFSELGLSEKIVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRARVR---------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
            +L +  AR             R L+L PTRELAAQV ++   YGK   L   ++ GG+ 
Sbjct: 61  QLLSETAARQAGGAQRGGRVAVRALVLTPTRELAAQVEESVRNYGKYLRLRSMVMFGGVG 120

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q ++L+RG ++++ TPGR+LDH ++  + ++ +E+LV+DEADRMLDMGFI  I+ I 
Sbjct: 121 INPQIEQLKRGVEIVVATPGRLLDHVSQRTIDLSQVELLVLDEADRMLDMGFIHDIRKIL 180

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +++P  RQ LLFSAT +D+++ +++  L NP  IEV   ++TAET++           +K
Sbjct: 181 NVLPAKRQNLLFSATFSDDIRALADRLLNNPASIEVARRNTTAETVDQRVYPV--DRERK 238

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL  L++  D  +  ++F   K     L   L K G S  AIHGN  Q +R + LS F
Sbjct: 239 RELLAHLVRQHDWHQV-LVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEF 297

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K GT++L+VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  
Sbjct: 298 KAGTLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCV 357

Query: 352 EDIKHIDAIEKLIEKKVD 369
           +++  +  IE+LI++K++
Sbjct: 358 DELGLLRDIERLIKRKLE 375


>gi|302134631|ref|ZP_07260621.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato NCPPB 1108]
          Length = 629

 Score =  325 bits (833), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A +  K +
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++K+   +GDL   +
Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381


>gi|66043725|ref|YP_233566.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas
           syringae pv. syringae B728a]
 gi|63254432|gb|AAY35528.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas
           syringae pv. syringae B728a]
          Length = 629

 Score =  325 bits (833), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A +  K +
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++K+   +GDL   +
Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381


>gi|120609836|ref|YP_969514.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120588300|gb|ABM31740.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
          Length = 489

 Score =  325 bits (833), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 169/372 (45%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L+  +  AV + GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L  
Sbjct: 5   FSNLSLAEPLARAVAEMGYTSMTPIQAEAIPVVLTGQDVMGAAQTGTGKTAAFSLPLLQR 64

Query: 63  LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L K      +  R P R L+L PTRELA QVA     Y K   L   ++ GG+  + Q  
Sbjct: 65  LLKHENSSTSPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQTL 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P T
Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKT 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R TLLFSAT + E+++++ ++LQNP  IEV  P+ TA T+E  F +      ++   +  
Sbjct: 185 RTTLLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQRFYSVNDDDKRRA--IHH 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+++  +K   +F N K     L  +LE++G    A+HG+  Q  R+K L  FK G + 
Sbjct: 243 VLRTRG-VKQAFVFVNSKLGCARLSRTLEREGLKAAALHGDKSQDERLKALDAFKRGEVD 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+V +D+AARGLDI DV  VFNFDVP  AE+Y+HRIGRTGRAG  G A TLV+  D + +
Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSSSDARLV 361

Query: 358 DAIEKLIEKKVD 369
             IEKL +KK+D
Sbjct: 362 ADIEKLTKKKID 373


>gi|326315975|ref|YP_004233647.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372811|gb|ADX45080.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 491

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 169/372 (45%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L+  +  AV + GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L  
Sbjct: 5   FSNLSLAEPLARAVAEMGYTSMTPIQAEAIPVVLTGQDVMGAAQTGTGKTAAFSLPLLQR 64

Query: 63  LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L K      +  R P R L+L PTRELA QVA     Y K   L   ++ GG+  + Q  
Sbjct: 65  LLKHENSSTSPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQTL 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P T
Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKT 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R TLLFSAT + E+++++ ++LQNP  IEV  P+ TA T+E  F +      ++   +  
Sbjct: 185 RTTLLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQRFYSVNDDDKRRA--IHH 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+++  +K   +F N K     L  +LE++G    A+HG+  Q  R+K L  FK G + 
Sbjct: 243 VLRTRG-VKQAFVFVNSKLGCARLSRTLEREGLKAAALHGDKSQDERLKALDAFKRGEVD 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+V +D+AARGLDI DV  VFNFDVP  AE+Y+HRIGRTGRAG  G A TLV+  D + +
Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSSSDARLV 361

Query: 358 DAIEKLIEKKVD 369
             IEKL +KK+D
Sbjct: 362 ADIEKLTKKKID 373


>gi|330865776|gb|EGH00485.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 500

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A +  K +
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++K+   +GDL   +
Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381


>gi|330957006|gb|EGH57266.1| helicase [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 630

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 170/386 (44%), Positives = 244/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV D+F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGTN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A +  K +
Sbjct: 181 LPAKRQNLLFSATFSNDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLPANH--KRS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  +IF   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TVGAWEQVLIFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++  +K+   +GDL   +
Sbjct: 358 EKLLKSIERMTRQKIP--DGDLMGFD 381


>gi|160897598|ref|YP_001563180.1| DEAD/DEAH box helicase domain-containing protein [Delftia
           acidovorans SPH-1]
 gi|160363182|gb|ABX34795.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
          Length = 504

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 180/422 (42%), Positives = 262/422 (62%), Gaps = 20/422 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L+  +  AV D GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L  
Sbjct: 5   FSNLQLAESLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQR 64

Query: 63  LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L +      +  R P R L+L PTRELA QVA    +Y K   L   ++ GG+  + Q  
Sbjct: 65  LMRHENTSASPARHPVRALVLLPTRELADQVAQQIAQYAKYTKLRSTVVFGGMDMKPQTL 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P T
Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSHLPKT 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R TLLFSAT + E+++++ ++LQ+P  IEV  P+ TA T+E  F +  +   K+ A L+ 
Sbjct: 185 RTTLLFSATFSPEIKRLASSYLQDPVTIEVARPNETASTVEQRFYSV-SDDDKRYA-LRS 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +D ++   +F N K     L  +LE+ G    A+HG+  Q  R+K L  FK G + 
Sbjct: 243 LLKQRD-IRQAFVFSNSKLGCARLTRALERDGLRATALHGDKSQDERLKALEAFKRGEVD 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+V +D+AARGLDI DV  VFN+DVP  AE+Y+HRIGRTGRAG  G A TLV   D + +
Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGIAVTLVTNHDARLV 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNP-PLEKI-DIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
             IEKLI+KK++        + P P+E     A   H  + + +P++S+G   R+++  +
Sbjct: 362 GEIEKLIKKKIN--------VEPCPMEDFRGSAPRGH--RFDELPRQSSGGYGRERDRGA 411

Query: 416 QK 417
           ++
Sbjct: 412 ER 413


>gi|257483568|ref|ZP_05637609.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 514

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A +  K +
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++K+   +GDL   +
Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381


>gi|294055756|ref|YP_003549414.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615089|gb|ADE55244.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 406

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 175/413 (42%), Positives = 263/413 (63%), Gaps = 15/413 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL+P ++ AV +AGY +PTPIQ   IP ++   DV G AQTGTGKTA+F LP L  
Sbjct: 4   FKDLGLAPAILSAVEEAGYTEPTPIQAGAIPHIIDGRDVIGSAQTGTGKTAAFALPALHR 63

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   +KG A    PR L+L PTRELAAQV + FEKYGK+  L  AL+ GG+ +  Q ++L
Sbjct: 64  LGKHQKGAA----PRCLVLGPTRELAAQVKEQFEKYGKDAQLKCALIHGGVGYGRQRQEL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-R 178
           E GADV+I TPGR++DH  +    + N+++L++DE DRMLDMGFI  ++ I        R
Sbjct: 120 EAGADVVIATPGRLIDHVQQRTADLRNVDLLILDEVDRMLDMGFIDDVKKIIKFCSKQGR 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+++E++++    L++P  + +    + AET++H      A   +K  LL  L
Sbjct: 180 QTLLFSATVSEEIKRLIARSLKDPVEVAIAVKITPAETVKHEVYPVGAM--QKFDLLVAL 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++S + + + IIFC  K     +   L++  + V A+H +++Q++R + L +FK+G I++
Sbjct: 238 IESME-VDSMIIFCRMKIGADRITRWLQQHKYKVAAMHADLNQKARNRALQDFKDGNIKI 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RGLDI +V HV N+DVP   E+Y+HRIGRTGRA R G A T++A ++   +D
Sbjct: 297 LVATDIASRGLDIANVTHVINYDVPEHPEDYVHRIGRTGRAQREGDAATILAPDEESKLD 356

Query: 359 AIEKLIEKKVDWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           AIEK I++ +     +  S ++ P  + D +     R+ N     S+ F RR+
Sbjct: 357 AIEKFIDQLIPQRKLESFSYIHQPRIREDSSSKPKRRRRN---SASSKFGRRR 406


>gi|51244788|ref|YP_064672.1| ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54]
 gi|50875825|emb|CAG35665.1| probable ATP-dependent RNA helicase [Desulfotalea psychrophila
           LSv54]
          Length = 423

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 167/368 (45%), Positives = 234/368 (63%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ K IP++++  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFNTLGLSAPLLKAVAEKGYDTPSPIQAKAIPVIMEGKDVMAAAQTGTGKTAAFTLPIL 60

Query: 61  TILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L + + RV+    R LIL PTRELAAQ+ ++   YGK  +LT A++ GG+    Q K+
Sbjct: 61  ELLSQSKRRVQANQARVLILTPTRELAAQIGESVTTYGKGLSLTSAVIFGGVNINPQMKR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+L+ TPGR+LD   +  +  N +EILV+DEADRMLDMGFI  I+ + + +P  R
Sbjct: 121 LRGGVDILVATPGRLLDLHRQNAIKFNRLEILVLDEADRMLDMGFINDIRKVLAFLPKER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT +  +  ++     NP  I V  P+ST E I+ C         +K ALL QL
Sbjct: 181 QNLMFSATFSSSINNLARGMFNNPVEISVTPPNSTVEIIDQCIYPV--DKKQKPALLIQL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++  +     ++F   K     L   L+K+G +  AIHGN  Q +R K L+ FK GT+Q+
Sbjct: 239 IRD-NKWGQTLVFSKTKHGANRLVGQLQKKGINAAAIHGNKSQSARTKALAEFKNGTVQI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV NFD+P+  E+YIHRIGRTGRAG  G+A +LV  ++   + 
Sbjct: 298 LVATDIAARGLDIDLLPHVVNFDLPHVQEDYIHRIGRTGRAGASGEAISLVCADEFALLA 357

Query: 359 AIEKLIEK 366
            IE+LI+K
Sbjct: 358 DIERLIKK 365


>gi|289625029|ref|ZP_06457983.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 516

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A +  K +
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++K+   +GDL   +
Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381


>gi|323491944|ref|ZP_08097113.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323313802|gb|EGA66897.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 482

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 166/367 (45%), Positives = 237/367 (64%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ D GY KP+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIQDQGYDKPSPIQEQAIPAVLNGQDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L+ G R +    R LIL PTRELAAQV +N  KY +   LT  ++ GG+    Q  KL
Sbjct: 61  ERLDNGTRVKGNHVRALILTPTRELAAQVQENVFKYSRYQRLTSTVVFGGVKINPQMLKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G+D+++ TPGR+LD + +  +  + +E+LV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGSDIVVATPGRLLDLYQQNAIKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA TIE       A   KK  +L +L+
Sbjct: 181 NLLFSATFSQEIRELAKGLVNNPVEISVSPENSTAVTIEQSIYP--ADKRKKAPMLVKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  K  ++FC  K     L H L K+  +   IHGN  Q +R + L++FK G ++++
Sbjct: 239 KDGD-WKQVLVFCRTKHGANRLAHFLNKEEITAAPIHGNKSQGARTRALADFKSGDVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++PN +E+Y+HRIGRTGRAG  GKA +LV  ++   +  
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPNVSEDYVHRIGRTGRAGEVGKAISLVEADEASDLFG 357

Query: 360 IEKLIEK 366
           IE+LI++
Sbjct: 358 IERLIQQ 364


>gi|88859624|ref|ZP_01134264.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas tunicata D2]
 gi|88818641|gb|EAR28456.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas tunicata D2]
          Length = 455

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 167/369 (45%), Positives = 233/369 (63%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  ++ AV + GY  PTPIQ+  IP +++  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFARLGLSAPILDAVAEQGYDTPTPIQLAAIPAIIEGRDMMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L KG+ A     R L+L PTRELAAQVA++ E YGKN  LT  ++ GG+    Q  +L
Sbjct: 61  ERLSKGKPAGNNQVRALVLTPTRELAAQVAESVELYGKNLKLTSFVVYGGVKVNPQMMRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD FN+  +  + +E+LV+DEADRMLDMGFI  I+ I  ++P  RQ
Sbjct: 121 RRGVDILVATPGRLLDLFNQRAVKFDQLEVLVLDEADRMLDMGFIHDIKKILKVLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +D+++ +++  + +P  + V   ++TA T+E          +KK ALL  L+
Sbjct: 181 NLMFSATFSDDIRNLAKGLINDPVEVSVAPANTTAATVEQRL--HPVDKAKKPALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D  K  ++F   K     L   LE    +  AIHGN  Q +RMK L+ FK+G ++++
Sbjct: 239 LQND-WKQVLVFTRTKHGANRLVKQLEADKINAAAIHGNKSQSARMKALAGFKDGQVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLDI  +  V NFD+PN AE+Y+HRIGRTGRAG  G A + V  E+ K +  
Sbjct: 298 VATDIVARGLDIDQLPQVVNFDLPNIAEDYVHRIGRTGRAGASGHAISFVTTEEAKELAD 357

Query: 360 IEKLIEKKV 368
           IE+LI   +
Sbjct: 358 IERLINATI 366


>gi|15600973|ref|NP_232603.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121586756|ref|ZP_01676539.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121727729|ref|ZP_01680817.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
 gi|147672261|ref|YP_001215860.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|153816784|ref|ZP_01969451.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
 gi|227811827|ref|YP_002811837.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
 gi|229506632|ref|ZP_04396141.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae BX 330286]
 gi|229510570|ref|ZP_04400050.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
 gi|229517298|ref|ZP_04406743.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC9]
 gi|229605109|ref|YP_002875813.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MJ-1236]
 gi|254850597|ref|ZP_05239947.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
 gi|255745988|ref|ZP_05419935.1| ATP-dependent RNA helicase RhlE [Vibrio cholera CIRS 101]
 gi|262162174|ref|ZP_06031189.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae INDRE 91/1]
 gi|262167359|ref|ZP_06035068.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC27]
 gi|298500057|ref|ZP_07009863.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
 gi|9657596|gb|AAF96116.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549053|gb|EAX59090.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121629946|gb|EAX62356.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
 gi|126512587|gb|EAZ75181.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
 gi|146314644|gb|ABQ19184.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|227010969|gb|ACP07180.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
 gi|227014875|gb|ACP11084.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|229345334|gb|EEO10307.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC9]
 gi|229353015|gb|EEO17955.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
 gi|229356983|gb|EEO21901.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae BX 330286]
 gi|229371595|gb|ACQ62017.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MJ-1236]
 gi|254846302|gb|EET24716.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
 gi|255735742|gb|EET91140.1| ATP-dependent RNA helicase RhlE [Vibrio cholera CIRS 101]
 gi|262024243|gb|EEY42935.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC27]
 gi|262028249|gb|EEY46907.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae INDRE 91/1]
 gi|297542038|gb|EFH78089.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
          Length = 451

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 170/391 (43%), Positives = 248/391 (63%), Gaps = 10/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG + R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I  I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C     A   KK  +L +L+
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPDMLVKLV 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386
           IE+L +  +  +N  L+   P    P  K+D
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNQLPESKLD 386


>gi|330812324|ref|YP_004356786.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380432|gb|AEA71782.1| putative ATP-dependent RNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 622

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 169/386 (43%), Positives = 243/386 (62%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A  S K A
Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPA--SHKRA 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L+K G    AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++K+   +GDL   +
Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381


>gi|316933048|ref|YP_004108030.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315600762|gb|ADU43297.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 473

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 185/463 (39%), Positives = 268/463 (57%), Gaps = 18/463 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL+  +  A+ +  Y+ PTPIQ +TIPL L   DV GIAQTGTGKTASF LP+L  
Sbjct: 10  FQDFGLADPISRALKEENYLTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILHR 69

Query: 63  LEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L + R +   +  R L+L PTREL+ Q+ D+F  YG++ +LT  L IGG+P   Q + L 
Sbjct: 70  LLQNRIKPTSKTCRVLVLSPTRELSGQILDSFNAYGRHIHLTATLAIGGVPMGRQVRSLM 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVL+ TPGR+LD      L +  +E LV+DEADRMLDMGFI  I+ I + +P  RQT
Sbjct: 130 GGVDVLVATPGRLLDLVQGNALKLTQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQT 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  ++  ++E  L++P R+ V   SST E I    +     +S K A+L QLL+
Sbjct: 190 LFFSATMPKDIADLAEQMLRDPARVAVTPVSSTVERINQRVI--QLDHSAKPAVLAQLLK 247

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  +   ++F   K     +   L + G +  AIHGN  Q  R ++L+ F+ G ++ +V
Sbjct: 248 DEK-VNQALVFTRTKHGADKVVKGLARAGITADAIHGNKSQNYRERVLAAFRTGELRTLV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HVFNFD+PN  E Y+HRIGRT RAG  G A +L A E++ ++  I
Sbjct: 307 ATDIAARGIDVDGVSHVFNFDLPNIPETYVHRIGRTARAGADGTAISLCAGEEMAYLRDI 366

Query: 361 EKLIE----KKVDWLNGDLSSLNPPLEK-IDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           EKLI+    K+     G  ++  PP  +    + H H  +N   P +  G +RR++  ++
Sbjct: 367 EKLIKVSLPKEDRRTPGAHAAPTPPPHRGPRQSPHGHPPRNGDAPTR--GKNRRRRGPAA 424

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
             +  P     + +   Q    +  +  G +G   AF+  KNR
Sbjct: 425 GPARQPEASRHETAARPQ----HSGNGEGLQGV--AFLQRKNR 461


>gi|289676388|ref|ZP_06497278.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas
           syringae pv. syringae FF5]
          Length = 435

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A +  K +
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++K+   +GDL   +
Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381


>gi|255261539|ref|ZP_05340881.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
 gi|255103874|gb|EET46548.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
          Length = 446

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 166/375 (44%), Positives = 237/375 (63%), Gaps = 5/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  LGL P++V  + D G   PTPIQ + IP  +   DV G+AQTGTGKTA+F LPM+
Sbjct: 1   MDFDMLGLMPRLVKKLADQGITDPTPIQAQAIPHAMNGRDVMGLAQTGTGKTAAFGLPMI 60

Query: 61  TILEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +   +   +  R LIL PTRELA Q++DN   Y +  +L VAL++GG    AQ K+
Sbjct: 61  DALMRAGVKPEPKTVRGLILAPTRELAKQISDNLRDYTQGSHLKVALVVGGAGIVAQMKR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG D+L+ TPGR++D  +R  L ++    LV+DEAD+MLD+GFI  ++ I  L+   R
Sbjct: 121 LERGVDLLVATPGRLIDLLDRKALSLSETHYLVLDEADQMLDLGFIHALRKIAPLLADDR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATM  ++ +++  +L++P R+EVN P   A+ IE      Y   S+K  LL +L
Sbjct: 181 QTMLFSATMPKQMNELAAAYLRSPVRVEVNPPGKAADKIEQSL--HYIAKSEKPKLLIEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +   +  I+F   K     L  +LEK GF   +IHGN  Q  R + +  F+EG + +
Sbjct: 239 L-GKHKGERAIVFGRTKHGCEKLYKTLEKAGFDAVSIHGNKSQGQRERAIVAFREGKVTV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIPDV HV+NFD+PN  ENY+HRIGRT RAG  G A    A +++  + 
Sbjct: 298 LVATDVAARGLDIPDVKHVYNFDLPNVPENYVHRIGRTARAGAEGMAIAFCAPDEMSELR 357

Query: 359 AIEKLIEKKVDWLNG 373
           +I+K+++  +   +G
Sbjct: 358 SIQKVMKMDIPVASG 372


>gi|90416628|ref|ZP_01224559.1| putative ATP-dependent RNA helicase RhlE [marine gamma
           proteobacterium HTCC2207]
 gi|90331827|gb|EAS47055.1| putative ATP-dependent RNA helicase RhlE [marine gamma
           proteobacterium HTCC2207]
          Length = 549

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 165/365 (45%), Positives = 232/365 (63%), Gaps = 4/365 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS  ++ A+   GY  P+PIQ K IP VL   DV   AQTGTGKTA F LP+L +
Sbjct: 4   FKDLGLSAPILKAITAQGYDTPSPIQAKAIPAVLDGRDVMAAAQTGTGKTAGFTLPILQL 63

Query: 63  LEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G RA+    RTLIL PTRELAAQV ++   YGK+ +L+ A++ GG+    Q  KL R
Sbjct: 64  LSAGKRAQPNQVRTLILTPTRELAAQVGESVATYGKHMSLSSAVVFGGVKINPQMMKLRR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVL+ TPGR++D +++  +    +E+LV+DEADRMLDMGFI  I+ I SL+P  RQ L
Sbjct: 124 GVDVLVATPGRLMDLYSQNAVKFTYLEVLVLDEADRMLDMGFIHDIKRIISLLPKRRQNL 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT +D+++K+++  + NP  I V   ++TA T+            +K  +L +L+  
Sbjct: 184 MFSATFSDDIRKLAKGLVHNPIEISVTPRNATAPTVTQSIYTV--DKKQKAGVLTRLIH- 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     ++F   K     L   LE +G    AIHGN  Q +R K L+ FK G ++++VA
Sbjct: 241 DNKWGQALVFTKTKHGANKLTKHLEAEGIVAAAIHGNKSQGARTKALAGFKAGEVRILVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V NFD+PN AE+Y+HRIGRTGRAG  G A +LV+ +++  +  IE
Sbjct: 301 TDIAARGLDIEQLPQVVNFDLPNVAEDYVHRIGRTGRAGSTGTAISLVSADEVDLLSDIE 360

Query: 362 KLIEK 366
           +L +K
Sbjct: 361 RLTQK 365


>gi|134296504|ref|YP_001120239.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134139661|gb|ABO55404.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
           G4]
          Length = 512

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 177/399 (44%), Positives = 249/399 (62%), Gaps = 17/399 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+P ++ A+++ GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 35  FDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 94

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q  
Sbjct: 95  LLPHASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNPQMA 154

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  +++LV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 155 ELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKE 214

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +    V   A+  K+ A++ Q
Sbjct: 215 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKQAAVV-Q 272

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +  +K  I+FCN K     L  +LE+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 273 LLRGRG-LKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKSQIERMQALDAFKRGEIE 331

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 332 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 391

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
             IEKLI++ ++       +L+ P      A+H H  +N
Sbjct: 392 ADIEKLIKRPLEV---QTLALDKP------ARHRHDERN 421


>gi|91794376|ref|YP_564027.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91716378|gb|ABE56304.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 496

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 167/370 (45%), Positives = 236/370 (63%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ A+   GY  PT IQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSSLGLSAALLKAIAKQGYDTPTAIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            IL KG+   R   R L+L PTRELAAQVAD+ E YG N  L  A++ GG+    Q   L
Sbjct: 61  EILSKGKPAQRGQVRALVLTPTRELAAQVADSVETYGHNLPLKSAVVFGGVSIVPQIAAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G D+L+ TPGR+LD  N+  L  + +EILV+DEADRMLDMGFI  I+ + +++P  RQ
Sbjct: 121 KQGVDILVATPGRLLDLCNQRALSFSTLEILVLDEADRMLDMGFIRDIRKVLAMLPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +D+++++++  + NP  I V   ++TA T+   +V    Q  K   L+   L
Sbjct: 181 NLMFSATFSDDIRELAKGLVNNPVEISVTPRNATANTVTQ-WVTPVGQSDKTSVLID--L 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  ++F   K     +  +LE       AIHGN  Q +R K L++FK G +Q+M
Sbjct: 238 IKDNNWQQVLVFSRTKHGANRIAKNLEAASIKAAAIHGNKSQGARTKALADFKAGKVQVM 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V NFD+PN +E+Y+HRIGRTGRAG  G+A +LVA E++K +  
Sbjct: 298 VATDIAARGIDIDQLPFVVNFDLPNVSEDYVHRIGRTGRAGASGQAVSLVADEEVKLLHD 357

Query: 360 IEKLIEKKVD 369
           IE+LI + +D
Sbjct: 358 IERLIGRVID 367


>gi|156977695|ref|YP_001448601.1| hypothetical protein VIBHAR_06483 [Vibrio harveyi ATCC BAA-1116]
 gi|156529289|gb|ABU74374.1| hypothetical protein VIBHAR_06483 [Vibrio harveyi ATCC BAA-1116]
          Length = 527

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 168/367 (45%), Positives = 235/367 (64%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G R R    R L+L PTRELAAQV +N   Y ++  LT A++ GG+    Q  +L
Sbjct: 61  ERLSNGPRVRSNHIRALVLTPTRELAAQVQENVFMYSRHLPLTSAVVFGGVKINPQMLRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +N+  +  + +E+LV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLYNQNAVKFDQLEMLVLDEADRMLDMGFIRDIRKILELLPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT ++E++ +++  + NP  I VN  +STA T+E C     A   KK  +L +L+
Sbjct: 181 NLLFSATFSNEIRDLAKGLVNNPVEISVNPANSTARTVEQCIYP--ADVKKKAPMLVKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  K  ++F   K     L   L  Q  +  AIHGN  Q +R K L++FK G ++++
Sbjct: 239 KDGD-WKQVLVFTKTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV   +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFA 357

Query: 360 IEKLIEK 366
           IE+LI++
Sbjct: 358 IERLIQQ 364


>gi|126442203|ref|YP_001058242.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
 gi|167901897|ref|ZP_02489102.1| DEAD/DEAH box helicase [Burkholderia pseudomallei NCTC 13177]
 gi|237811490|ref|YP_002895941.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
 gi|126221696|gb|ABN85202.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
 gi|237505268|gb|ACQ97586.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
          Length = 481

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 174/395 (44%), Positives = 244/395 (61%), Gaps = 18/395 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+ +++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q  
Sbjct: 73  LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   ++ A T+    V   A+  K+ A+++ 
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
             IEKLI++ +      L +L      +D+ +H H
Sbjct: 370 ADIEKLIKRTL-----SLETL-----ALDLPRHRH 394


>gi|53718749|ref|YP_107735.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           K96243]
 gi|53725492|ref|YP_103512.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
 gi|67643786|ref|ZP_00442529.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
 gi|121599991|ref|YP_992380.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
 gi|124383787|ref|YP_001026818.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
 gi|126449417|ref|YP_001079898.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
 gi|126454058|ref|YP_001065480.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
 gi|134281039|ref|ZP_01767748.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
 gi|167893438|ref|ZP_02480840.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 7894]
 gi|217419830|ref|ZP_03451336.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
 gi|242317719|ref|ZP_04816735.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
 gi|52209163|emb|CAH35107.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           K96243]
 gi|52428915|gb|AAU49508.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
 gi|121228801|gb|ABM51319.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
 gi|124291807|gb|ABN01076.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
 gi|126227700|gb|ABN91240.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
 gi|126242287|gb|ABO05380.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
 gi|134247345|gb|EBA47430.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
 gi|217397134|gb|EEC37150.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
 gi|238525219|gb|EEP88647.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
 gi|242140958|gb|EES27360.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
          Length = 482

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 174/395 (44%), Positives = 244/395 (61%), Gaps = 18/395 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+ +++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q  
Sbjct: 73  LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   ++ A T+    V   A+  K+ A+++ 
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
             IEKLI++ +      L +L      +D+ +H H
Sbjct: 370 ADIEKLIKRTL-----SLETL-----ALDLPRHRH 394


>gi|331005215|ref|ZP_08328608.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989]
 gi|330420958|gb|EGG95231.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989]
          Length = 464

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 169/367 (46%), Positives = 233/367 (63%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV D GY  P+PIQ K IP+VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTTLGLSDPILKAVTDKGYDTPSPIQAKAIPVVLEGRDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            IL KG+ AR    R L+L PTRELAAQVA++ E YGK+  L  A++ GG+    Q  KL
Sbjct: 61  EILSKGQPARANQVRALVLTPTRELAAQVAESVETYGKHLKLRSAVVFGGVKINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+LI TPGR+LD   +  +  N +EIL++DEADRMLDMGFI  I+ I   +P  RQ
Sbjct: 121 RGGVDILIATPGRLLDLHQQNAMSFNKLEILILDEADRMLDMGFINDIRKILKALPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +D+++ +++  +  P  I V   +STA T+            +K +LL +L+
Sbjct: 181 NLMFSATFSDDIRDLAKTIVNKPIEISVTPKNSTATTVTQWIHPV--DKKQKPSLLVELI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  ++F   K     L   LEK      AIHGN  Q +R + L++FK G ++++
Sbjct: 239 Y-QHKWEQVLVFSRTKHGANKLATFLEKHSIKAAAIHGNKSQGARTRALADFKAGKVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N D+PN AE+Y+HRIGRTGRAG  G+A +LV+ ++I+ +  
Sbjct: 298 VATDIAARGLDIEQLPQVVNIDLPNVAEDYVHRIGRTGRAGATGQAVSLVSADEIQQLQD 357

Query: 360 IEKLIEK 366
           IE+LI+K
Sbjct: 358 IERLIQK 364


>gi|309781736|ref|ZP_07676469.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
 gi|308919377|gb|EFP65041.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
          Length = 498

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 170/373 (45%), Positives = 239/373 (64%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL P V+ A+ ++GY KPTPIQ   IP+V   HDV G AQTGTGKTA F LP++  
Sbjct: 20  FDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGHDVMGAAQTGTGKTAGFSLPIIHN 79

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QV DN  KY K   L  A++ GG+    Q +
Sbjct: 80  LLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTE 139

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++L+ TPGR+LDH  +  + ++ + +LV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 140 QLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAH 199

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E+++++ ++L++P+ IEV   ++TAE +    + T     K+ AL+  
Sbjct: 200 RQTLLFSATFSPEIKRLAASYLRHPQTIEVARSNATAENVRQV-IYTVPDNHKQAALVHL 258

Query: 238 LLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L Q   Q   +  I+F N K     L  +LE++G +  AIHG+  Q  RM+ L  FK+GT
Sbjct: 259 LRQRAEQGLPRQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGT 318

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGLDI  +  V NFD+P  AE+Y+HRIGRTGRAG  G A +L A  D +
Sbjct: 319 VDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDER 378

Query: 356 HIDAIEKLIEKKV 368
            +  IEKLI++ +
Sbjct: 379 LLADIEKLIKRNL 391


>gi|217970063|ref|YP_002355297.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
 gi|217507390|gb|ACK54401.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
          Length = 545

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 169/373 (45%), Positives = 240/373 (64%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGL P+++ AV DAGY +PTPIQ + IP+V+   DV G AQTGTGKTA F LP+L
Sbjct: 1   MSFADLGLIPELLQAVTDAGYTEPTPIQRQAIPIVIAGKDVMGGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             + +       P     R LIL PTRELA QV ++ + Y K+  L    + GG+    Q
Sbjct: 61  HRIARHANTSTSPARHQTRALILAPTRELAMQVFESVKTYSKHLPLRSVCVYGGVDIRPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L RG +++I TPGR+LDH  +  + ++ +E+LV+DEADRMLDMGFIP I+ I +L+P
Sbjct: 121 QAELRRGIEIVIATPGRLLDHLEQKSINLSQVEVLVLDEADRMLDMGFIPDIKRILALLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ+LLFSAT +DE++++++  L+ P+ IEV   +  +ETI H  V   +   K+  L 
Sbjct: 181 KQRQSLLFSATFSDEIKRLADQMLKEPQLIEVARRNMVSETITHV-VHPVSSGMKRNLLA 239

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L    DT    ++F + K     L H LE+ G S  AIHG+  Q+ R   L  FK G 
Sbjct: 240 HLLRHKPDT--QALVFVDTKLMCGRLAHYLERSGISADAIHGDKGQQQRTDTLEAFKSGK 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGLDI ++  V NF++P+ AE+Y+HRIGRTGRAG HG A +LV+ E+  
Sbjct: 298 LRVLVATDVAARGLDIDELPFVINFELPHTAEDYVHRIGRTGRAGHHGYAISLVSSEEKH 357

Query: 356 HIDAIEKLIEKKV 368
            +  IEKLI+ ++
Sbjct: 358 WLSEIEKLIKLQI 370


>gi|167823349|ref|ZP_02454820.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 9]
 gi|226195327|ref|ZP_03790916.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
 gi|225932529|gb|EEH28527.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
          Length = 478

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 174/395 (44%), Positives = 244/395 (61%), Gaps = 18/395 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+ +++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q  
Sbjct: 73  LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   ++ A T+    V   A+  K+ A+++ 
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
             IEKLI++ +      L +L      +D+ +H H
Sbjct: 370 ADIEKLIKRTL-----SLETL-----ALDLPRHRH 394


>gi|76808776|ref|YP_332762.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           1710b]
 gi|76578229|gb|ABA47704.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           1710b]
          Length = 559

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 174/395 (44%), Positives = 244/395 (61%), Gaps = 18/395 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+ +++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 90  FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 149

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q  
Sbjct: 150 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 209

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 210 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 269

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   ++ A T+    V   A+  K+ A+++ 
Sbjct: 270 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 327

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 328 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 386

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 387 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 446

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
             IEKLI++ +      L +L      +D+ +H H
Sbjct: 447 ADIEKLIKRTL-----SLETL-----ALDLPRHRH 471


>gi|332306494|ref|YP_004434345.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173823|gb|AEE23077.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 436

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 158/367 (43%), Positives = 235/367 (64%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLSP ++ AV   GY  P+PIQ + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFADLGLSPAILSAVTAKGYTDPSPIQAQAIPAILEGKDIMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +G+ AR    R L+L PTRELAAQV  +   YGK+  L  A++ GG+    Q  KL
Sbjct: 61  ELLNRGKHARGNQARALVLTPTRELAAQVGASVVDYGKDLPLRSAVVFGGVGINPQMIKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD +N+  +  +++E+LV+DEADRMLDMGFI  I+ +  L+P  RQ
Sbjct: 121 RKGVDILVATPGRLLDLYNQNAVRFDDLEVLVLDEADRMLDMGFIHDIKKVLKLLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +D+++ +++  + NP  + V+ P++T E +E          ++K   L +++
Sbjct: 181 NLLFSATFSDDIRALAKGLVNNPVEVSVSPPNTTVEAVEQSICPV--DKNQKTPALIRMI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  +  ++F   K     +   LE +G +  AIHGN  Q +R K L+ FK G ++ +
Sbjct: 239 KDND-WQQVLVFSRTKHGANRIAKQLEARGITSAAIHGNKSQGARTKALAEFKSGKVRAL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+D+PN AE+Y+HRIGRTGRAG  G+A +LV  ++   +  
Sbjct: 298 VATDIAARGLDISQLPQVVNYDLPNVAEDYVHRIGRTGRAGASGQAISLVTADEFSLLAD 357

Query: 360 IEKLIEK 366
           IE+  ++
Sbjct: 358 IERFTKQ 364


>gi|187929488|ref|YP_001899975.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12J]
 gi|187726378|gb|ACD27543.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
          Length = 493

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 170/373 (45%), Positives = 239/373 (64%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL P V+ A+ ++GY KPTPIQ   IP+V   HDV G AQTGTGKTA F LP++  
Sbjct: 15  FDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGHDVMGAAQTGTGKTAGFSLPIIHN 74

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QV DN  KY K   L  A++ GG+    Q +
Sbjct: 75  LLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTE 134

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++L+ TPGR+LDH  +  + ++ + +LV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 135 QLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAH 194

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E+++++ ++L++P+ IEV   ++TAE +    + T     K+ AL+  
Sbjct: 195 RQTLLFSATFSPEIKRLAASYLRHPQTIEVARSNATAENVRQV-IYTVPDNHKQAALVHL 253

Query: 238 LLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L Q   Q   +  I+F N K     L  +LE++G +  AIHG+  Q  RM+ L  FK+GT
Sbjct: 254 LRQRAEQGLPRQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGT 313

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGLDI  +  V NFD+P  AE+Y+HRIGRTGRAG  G A +L A  D +
Sbjct: 314 VDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDER 373

Query: 356 HIDAIEKLIEKKV 368
            +  IEKLI++ +
Sbjct: 374 LLADIEKLIKRNL 386


>gi|313200940|ref|YP_004039598.1| dead/deah box helicase domain-containing protein [Methylovorus sp.
           MP688]
 gi|312440256|gb|ADQ84362.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688]
          Length = 541

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 178/445 (40%), Positives = 270/445 (60%), Gaps = 12/445 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL+  ++ A+ DAGY  PTPIQ++ IP VL   D+   AQTGTGKTA F LP+L +
Sbjct: 11  FAQLGLAEPILRAIADAGYTTPTPIQLQAIPQVLTGGDLLAGAQTGTGKTAGFTLPLLHL 70

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L+   G+ +   PR LIL PTRELAAQV ++ + YGK   L   ++ GG+    Q  +L+
Sbjct: 71  LQGRPGKNKAGQPRCLILTPTRELAAQVEESVQTYGKYLPLKSMVMFGGVGINPQVAQLK 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+L+ TPGR+LDH N+  + ++ +EILV+DEADRMLDMGFI  I+ + +L+P  RQ 
Sbjct: 131 KPLDILVATPGRLLDHANQKTVDLSAVEILVLDEADRMLDMGFIRDIKRVLALLPKQRQN 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT +DE++ +++  L NP  +EV   ++ +E +E        + S K  ++  L++
Sbjct: 191 LLFSATFSDEIKALADGLLHNPGFVEVARRNTASELVEQTV--HLVRQSHKRDMVSHLIK 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+  +  +IF   K     L   L K G    AIHGN  Q +R K L+ FK+G++ ++V
Sbjct: 249 -QNNWQQVLIFTRTKHGANRLADKLVKDGIPAAAIHGNKSQSARTKALAQFKDGSLPVLV 307

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++PN AE+Y+HRIGRTGRAG  G A +LV +E+IK +  I
Sbjct: 308 ATDIAARGLDIDQLPQVVNFELPNVAEDYVHRIGRTGRAGATGAAVSLVDEEEIKLLKGI 367

Query: 361 EKLIEKKVDWLNGDLSSLNP-PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           E+LI++++  +  ++    P P++K   ++    R     P+   G  R+ +   +Q   
Sbjct: 368 ERLIKREIPRV--EVEGFVPSPVDKSAASEEREPR----APRPRQGQPRQGQPRQNQARQ 421

Query: 420 IPLKESEKISKLQQDIQENDADSLG 444
              ++S+      +  +EN A   G
Sbjct: 422 SQPRDSQASPSQPRQPRENAARPGG 446


>gi|253998846|ref|YP_003050909.1| DEAD/DEAH box helicase domain-containing protein [Methylovorus sp.
           SIP3-4]
 gi|253985525|gb|ACT50382.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. SIP3-4]
          Length = 538

 Score =  323 bits (828), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 178/445 (40%), Positives = 270/445 (60%), Gaps = 12/445 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL+  ++ A+ DAGY  PTPIQ++ IP VL   D+   AQTGTGKTA F LP+L +
Sbjct: 11  FAQLGLAEPILRAIADAGYTTPTPIQLQAIPQVLTGGDLLAGAQTGTGKTAGFTLPLLHL 70

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L+   G+ +   PR LIL PTRELAAQV ++ + YGK   L   ++ GG+    Q  +L+
Sbjct: 71  LQGRPGKNKAGQPRCLILTPTRELAAQVEESVQTYGKYLPLKSMVMFGGVGINPQVAQLK 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+L+ TPGR+LDH N+  + ++ +EILV+DEADRMLDMGFI  I+ + +L+P  RQ 
Sbjct: 131 KPLDILVATPGRLLDHANQKTVDLSAVEILVLDEADRMLDMGFIRDIKRVLALLPKQRQN 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT +DE++ +++  L NP  +EV   ++ +E +E        + S K  ++  L++
Sbjct: 191 LLFSATFSDEIKALADGLLHNPGFVEVARRNTASELVEQTV--HLVRQSHKRDMVSHLIK 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+  +  +IF   K     L   L K G    AIHGN  Q +R K L+ FK+G++ ++V
Sbjct: 249 -QNNWQQVLIFTRTKHGANRLADKLVKDGIPAAAIHGNKSQSARTKALAQFKDGSLPVLV 307

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++PN AE+Y+HRIGRTGRAG  G A +LV +E+IK +  I
Sbjct: 308 ATDIAARGLDIDQLPQVVNFELPNVAEDYVHRIGRTGRAGATGAAVSLVDEEEIKLLKGI 367

Query: 361 EKLIEKKVDWLNGDLSSLNP-PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           E+LI++++  +  ++    P P++K   ++    R     P+   G  R+ +   +Q   
Sbjct: 368 ERLIKREIPRV--EVEGFVPSPVDKSAASEEREPR----APRPRQGQPRQGQPRQNQARQ 421

Query: 420 IPLKESEKISKLQQDIQENDADSLG 444
              ++S+      +  +EN A   G
Sbjct: 422 SQPRDSQASPSQPRQPRENAARPGG 446


>gi|167910130|ref|ZP_02497221.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           112]
          Length = 400

 Score =  323 bits (828), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 174/395 (44%), Positives = 244/395 (61%), Gaps = 18/395 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+ +++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q  
Sbjct: 73  LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   ++ A T+    V   A+  K+ A+++ 
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
             IEKLI++ +      L +L      +D+ +H H
Sbjct: 370 ADIEKLIKRTL-----SLETL-----ALDLPRHRH 394


>gi|254259821|ref|ZP_04950875.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
 gi|254218510|gb|EET07894.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
          Length = 486

 Score =  323 bits (828), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 174/395 (44%), Positives = 244/395 (61%), Gaps = 18/395 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+ +++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q  
Sbjct: 73  LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   ++ A T+    V   A+  K+ A+++ 
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
             IEKLI++ +      L +L      +D+ +H H
Sbjct: 370 ADIEKLIKRTL-----SLETL-----ALDLPRHRH 394


>gi|330972612|gb|EGH72678.1| helicase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 498

 Score =  323 bits (828), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 167/386 (43%), Positives = 244/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGK   F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKAGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A +  K +
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++K+   +GDL   +
Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381


>gi|167737747|ref|ZP_02410521.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           14]
          Length = 409

 Score =  323 bits (828), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 174/395 (44%), Positives = 244/395 (61%), Gaps = 18/395 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+ +++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q  
Sbjct: 73  LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   ++ A T+    V   A+  K+ A+++ 
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQAIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
             IEKLI++ +      L +L      +D+ +H H
Sbjct: 370 ADIEKLIKRTL-----SLETL-----ALDLPRHRH 394


>gi|121608317|ref|YP_996124.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121552957|gb|ABM57106.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 486

 Score =  323 bits (828), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 170/372 (45%), Positives = 234/372 (62%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L+  +  AV + GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L  
Sbjct: 5   FSNLMLAEPLARAVAEMGYTAMTPIQAQAIPVVLTGQDVMGAAQTGTGKTAAFSLPLLQR 64

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L +  +    P     R L+L PTRELA QVA     Y ++  L   ++ GGI  + Q  
Sbjct: 65  LLRHESSSASPARHPVRALVLLPTRELADQVARQIALYARHTKLRSTVVFGGIDMKPQTL 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P  
Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKE 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R TLLFSAT + E+++++ ++L  P  IEV  P++TA T+E  F +  A    K   + Q
Sbjct: 185 RTTLLFSATFSPEIRRLASSYLHQPVTIEVARPNATAATVEQRFYS--ANDDDKRRAIHQ 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+++  +K   IF N K     L  SLE++G    A+HG+  Q  R+K L  FK G + 
Sbjct: 243 VLRTRG-LKQAFIFVNSKLGCARLARSLEREGLRTAALHGDRSQDERLKALQAFKSGDVD 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+V +D+AARGLDI DV  VFNFDVP  AE+Y+HRIGRTGRAG  G A TLV+  D + +
Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSGSDARLV 361

Query: 358 DAIEKLIEKKVD 369
             IEKLI KK D
Sbjct: 362 ADIEKLIGKKTD 373


>gi|167814905|ref|ZP_02446585.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           91]
          Length = 411

 Score =  323 bits (828), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 174/395 (44%), Positives = 244/395 (61%), Gaps = 18/395 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+ +++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q  
Sbjct: 73  LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   ++ A T+    V   A+  K+ A+++ 
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
             IEKLI++ +      L +L      +D+ +H H
Sbjct: 370 ADIEKLIKRTL-----SLETL-----ALDLPRHRH 394


>gi|73540223|ref|YP_294743.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72117636|gb|AAZ59899.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 506

 Score =  323 bits (827), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 168/372 (45%), Positives = 241/372 (64%), Gaps = 6/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY  PTPIQ + IP +L+  D+   AQTGTGKTA F LPML
Sbjct: 1   MSFSELGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML 60

Query: 61  TIL-EKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L E    R   P  R L+L PTRELAAQV ++   YGK   L   ++ GG+    Q +
Sbjct: 61  QLLSESAPQRQGKPAVRALVLTPTRELAAQVEESVRNYGKYVRLRSMVMFGGVGINPQIE 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++++ TPGR+LDH ++  + ++++E+LV+DEADRMLDMGFI  I+ I +++P  
Sbjct: 121 QLRRGVEIVVATPGRLLDHVSQRTIDLSSVELLVLDEADRMLDMGFIHDIRKILNVLPPK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ +++  L NP  IEV   ++TAET+            +K  LL  
Sbjct: 181 RQNLLFSATFSDDIRALADRLLNNPASIEVARRNTTAETVAQRVYPV--DRERKRELLAH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++  D  +  ++F   K     L   L K G S  AIHGN  Q +R + LS FK GT++
Sbjct: 239 LVREHDWHQV-LVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEFKAGTLR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++   +
Sbjct: 298 LLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDEHGLL 357

Query: 358 DAIEKLIEKKVD 369
             IE+LI++K++
Sbjct: 358 RDIERLIKRKLE 369


>gi|331009646|gb|EGH89702.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 625

 Score =  323 bits (827), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 167/386 (43%), Positives = 244/386 (63%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F  P+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFAPPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A +  K +
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            K + +IE++ ++K+   +GDL   +
Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381


>gi|167718732|ref|ZP_02401968.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           DM98]
          Length = 409

 Score =  323 bits (827), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 174/395 (44%), Positives = 244/395 (61%), Gaps = 18/395 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+ +++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q  
Sbjct: 73  LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   ++ A T+    V   A+  K+ A+++ 
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
             IEKLI++ +      L +L      +D+ +H H
Sbjct: 370 ADIEKLIKRTL-----SLETL-----ALDLPRHRH 394


>gi|167844897|ref|ZP_02470405.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           B7210]
          Length = 399

 Score =  323 bits (827), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 174/395 (44%), Positives = 244/395 (61%), Gaps = 18/395 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+ +++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q  
Sbjct: 73  LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   ++ A T+    V   A+  K+ A+++ 
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
             IEKLI++ +      L +L      +D+ +H H
Sbjct: 370 ADIEKLIKRTL-----SLETL-----ALDLPRHRH 394


>gi|114564376|ref|YP_751890.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114335669|gb|ABI73051.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 477

 Score =  323 bits (827), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 173/402 (43%), Positives = 245/402 (60%), Gaps = 9/402 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL+  ++ AV   GY  P+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSSLGLNAAILKAVEKQGYDTPSPIQAQAIPAVLAGQDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG RA+    R L+L PTRELAAQV ++   YG N  L  A++ GG+    Q   L
Sbjct: 61  ELLSKGERAQRGQVRALVLTPTRELAAQVQESVATYGVNLPLKSAVVFGGVSIVPQLAAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD   +  +  + +EILV+DEADRMLDMGFI  I+ + +L+P  RQ
Sbjct: 121 RNGVDILVATPGRLLDLCQQKAISFSKLEILVLDEADRMLDMGFIRDIKKVLALLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT ++E++++++  + NP  I V   ++TA T+  C        ++K   L +L+
Sbjct: 181 NLMFSATFSNEIRELAKGLVNNPVEISVTPRNATANTVTQCVYPV--DKTRKSMALIELI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++ D  K  ++F   K     L  SLE  G    AIHGN  Q +R K L++FK G +Q+M
Sbjct: 239 KTND-WKQVLVFSRTKHGANRLAKSLEAAGIKAAAIHGNKSQTARTKALADFKAGAVQVM 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  E++K +  
Sbjct: 298 VATDIAARGIDIDQLPFVVNFDLPNVPEDYVHRIGRTGRAGSTGQAVSLVGLEEVKLLHD 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPL---EKIDIAQHNHARKNNP 398
           IE+LI + ++     L+    P    E    +  N A+K NP
Sbjct: 358 IERLINRVIE--RKQLAGFEAPFTIPEASSRSGGNSAKKPNP 397


>gi|323499382|ref|ZP_08104358.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
 gi|323315567|gb|EGA68602.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
          Length = 477

 Score =  323 bits (827), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 170/391 (43%), Positives = 246/391 (62%), Gaps = 10/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY KP+PIQ + IP VLQ  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEQGYDKPSPIQEQAIPAVLQGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L+ G R +    R L+L PTRELAAQV +N  KY +   LT  ++ GG+    Q  KL
Sbjct: 61  ERLDNGTRVKGNHVRALVLTPTRELAAQVQENVFKYSRYQRLTSQVIFGGVKANPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DVL+ TPGR+LD + +  +  + +E+LV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGCDVLVATPGRLLDLYQQNAIKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + +P  + V+  +STA TIE       A   KK  +L +++
Sbjct: 181 NLLFSATFSPEIRELAKGLVNDPVEVSVSKENSTAVTIEQSIYP--ADKRKKAPMLVKMI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  K  ++FC  K     L   L K+G +   IHGN  Q +R + L++FK G ++++
Sbjct: 239 KDGD-WKQTLVFCRTKHGANRLAFFLNKEGITAAPIHGNKSQGARTRALADFKSGDVKVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++PN +E+Y+HRIGRTGRAG  GKA++LV   +   +  
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPNVSEDYVHRIGRTGRAGEVGKAYSLVEAAEASELFG 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386
           IE+LI++ +  L  +L    P    P  K+D
Sbjct: 358 IERLIQQVLPRL--ELEGFKPVNELPESKLD 386


>gi|167918160|ref|ZP_02505251.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BCC215]
          Length = 414

 Score =  323 bits (827), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 174/395 (44%), Positives = 244/395 (61%), Gaps = 18/395 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+ +++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q  
Sbjct: 73  LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   ++ A T+    V   A+  K+ A+++ 
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
             IEKLI++ +      L +L      +D+ +H H
Sbjct: 370 ADIEKLIKRTL-----SLETL-----ALDLPRHRH 394


>gi|88707113|ref|ZP_01104807.1| ATP-dependent RNA helicase [Congregibacter litoralis KT71]
 gi|88698625|gb|EAQ95750.1| ATP-dependent RNA helicase [Congregibacter litoralis KT71]
          Length = 423

 Score =  323 bits (827), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 177/421 (42%), Positives = 252/421 (59%), Gaps = 6/421 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP +V A  D GY +PTPIQ K +PLVL   DV   AQTGTGKTA+FVLP+L
Sbjct: 1   MTFDALGLSPNLVKAANDRGYSQPTPIQTKAVPLVLDGQDVLAAAQTGTGKTAAFVLPIL 60

Query: 61  TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L   G AR R  RTL+L PTRELA+QV D+   YG+  +L  A++ GG+  E Q + L
Sbjct: 61  QRLAFVGGARGRQVRTLVLTPTRELASQVHDSVLTYGRYLDLRSAVVFGGVRAEPQIEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G DVL+ TPGR+LD   +G +  + +E+LV+DEADRMLDMGFI  ++ I  ++P  RQ
Sbjct: 121 EPGVDVLVATPGRLLDLAQQGYVDFSALEVLVLDEADRMLDMGFIHDMRRIIEMLPINRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++  +L  P  ++V   +ST E +E    A   ++  K  LL  L 
Sbjct: 181 TLMFSATFSQEIRSLAARYLVEPVSVDVAPANSTTELVEQKAYAVDPEH--KSDLLMHLF 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +      ++FC  K     L  +L   GF+   IHGN  Q +R + L  FK+G +QL+
Sbjct: 239 R-EGEWGQALVFCRTKHGANQLSKALLNAGFAAAPIHGNKSQNARQRALDAFKKGDLQLL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+DLAARGLDI  +  V NFD+P+  ++Y+HRIGRTGRAG  G++ +LV+ +D   + A
Sbjct: 298 IATDLAARGLDIDQLPEVVNFDLPSVPQDYVHRIGRTGRAGATGRSHSLVSADDEPLLRA 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE LI +++  + ++G   +  PP       + +  RK      +     RR +      
Sbjct: 358 IEVLIRREIPMEHVSGFEPTDRPPSSHNTGDREDRGRKTPGSAPRDAAVARRSREPGGSS 417

Query: 418 S 418
           S
Sbjct: 418 S 418


>gi|167585895|ref|ZP_02378283.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
          Length = 487

 Score =  322 bits (826), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 173/372 (46%), Positives = 239/372 (64%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+  ++ A+ + GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP+L  
Sbjct: 13  FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPILQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   YGK+  L  A++ GG+    Q  
Sbjct: 73  LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYGKHTPLRSAVVFGGVDMNPQMA 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  +++LV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +    V   A+  K+ A++ Q
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKQAAVV-Q 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+S+  +K  I+FCN K     L  +LE+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 LLRSRG-LKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKKVD 369
             IEKLI++ ++
Sbjct: 370 ADIEKLIKRPLE 381


>gi|167580312|ref|ZP_02373186.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
 gi|167618435|ref|ZP_02387066.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
 gi|257139776|ref|ZP_05588038.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
          Length = 481

 Score =  322 bits (826), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 173/395 (43%), Positives = 244/395 (61%), Gaps = 18/395 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+ +++ A+ + GY  PTPIQ   IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q  
Sbjct: 73  LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   ++ A T+    V   A+  K+ A+++ 
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
             IEKLI++ +      L +L     ++D+ +H H
Sbjct: 370 ADIEKLIKRTL-----SLETL-----ELDLPRHRH 394


>gi|54302911|ref|YP_132904.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
           SS9]
 gi|46916335|emb|CAG23104.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
           SS9]
          Length = 471

 Score =  322 bits (826), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 168/367 (45%), Positives = 238/367 (64%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  ++ AV   GY  P+PIQ + IP V++  DV   AQTGTGKTA+F LP+L
Sbjct: 7   MSFASLGLSAPILEAVTKQGYETPSPIQAQAIPAVIEGKDVMAAAQTGTGKTAAFTLPVL 66

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G R +    R L+L PTRELAAQVA++   Y KN  L+ A++ GG+    Q  +L
Sbjct: 67  ERLSNGPRVKPNQVRALVLTPTRELAAQVAESVALYAKNLPLSSAVVFGGVKINPQMMRL 126

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR+LD +N+  +  + IE+LV+DEADRMLDMGFI  I+ + + +P  RQ
Sbjct: 127 RQGADVLVATPGRLLDLYNQRAVRFDQIEVLVLDEADRMLDMGFIRDIRKLLAAMPKQRQ 186

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++++++  + NP  I V   ++TA T++          S+K  LL +LL
Sbjct: 187 NLLFSATFSDEIRQLAKGLVNNPVEISVTPRNATAPTVKQWICPV--DKSRKANLLTKLL 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++     ++F   K     L   LE +G    AIHGN  Q +R K L+NFK   IQ++
Sbjct: 245 K-ENNWGQVLVFTKTKHGANRLTTHLEGRGIKAAAIHGNKSQGARTKALANFKSNEIQVL 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NF++P+ AE+Y+HRIGRTGRAG  G+A +LV  ++ K + A
Sbjct: 304 VATDIAARGLDIEQLPQVVNFELPHVAEDYVHRIGRTGRAGCEGQAISLVCADEYKDLAA 363

Query: 360 IEKLIEK 366
           IE+LI++
Sbjct: 364 IERLIKQ 370


>gi|163801279|ref|ZP_02195178.1| ATP-dependent RNA helicase RhlE [Vibrio sp. AND4]
 gi|159174768|gb|EDP59568.1| ATP-dependent RNA helicase RhlE [Vibrio sp. AND4]
          Length = 472

 Score =  322 bits (825), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 165/367 (44%), Positives = 237/367 (64%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSVPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L  G R R    R LIL PTRELAAQV ++   Y ++  L  A++ GG+    Q ++L
Sbjct: 61  ELLSNGPRVRANHVRALILTPTRELAAQVQESVFTYSQHLPLNSAVVFGGVKINPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +++  +  + +E+LV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLYSQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILDLLPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ +++  + NP  I VN  +STA T+E     + A+  KK  +L +L+
Sbjct: 181 NLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPSDAK--KKAPMLVKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  +  ++F   K     L   L  +     AIHGN  Q +R K L++FK G I+++
Sbjct: 239 KEGD-WRQVLVFTRTKHGANRLAKFLIDEKLPAAAIHGNKSQSARTKALADFKSGAIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEMGKAISLVSALEAPELFA 357

Query: 360 IEKLIEK 366
           IE+LI++
Sbjct: 358 IERLIQQ 364


>gi|90414421|ref|ZP_01222398.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
           3TCK]
 gi|90324534|gb|EAS41090.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
           3TCK]
          Length = 464

 Score =  322 bits (825), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 167/367 (45%), Positives = 238/367 (64%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  ++ AV   GY  P+PIQ + IP V++  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLSAPILEAVAKQGYETPSPIQAQAIPAVIEGKDVMAAAQTGTGKTAGFTLPVL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G R +    R L+L PTRELAAQVA++   Y KN  L+ A++ GG+    Q  +L
Sbjct: 61  ERLSNGPRVKPNQVRALVLTPTRELAAQVAESVALYAKNLPLSSAVVFGGVKINPQMMRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR+LD +N+  +  + +E+LV+DEADRMLDMGFI  I+ + +++P  RQ
Sbjct: 121 RQGADVLVATPGRLLDLYNQRAVRFDQLEVLVLDEADRMLDMGFIRDIRKLLAVMPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++++++  + NP  I V   ++TA T++          S+K  LL +LL
Sbjct: 181 NLLFSATFSDEIRQLAKGLVNNPVEISVTPRNATAPTVKQWICPV--DKSRKANLLTKLL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++     ++F   K     L   LE +G    AIHGN  Q +R K L+NFK   IQ++
Sbjct: 239 K-ENNWGQVLVFTKTKHGANRLTTHLEGRGIKAAAIHGNKSQGARTKALANFKSNEIQVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NF++P+ AE+Y+HRIGRTGRAG  G+A +LV  ++ K + A
Sbjct: 298 VATDIAARGLDIEQLPQVVNFELPHVAEDYVHRIGRTGRAGCEGQAISLVCADEYKDLAA 357

Query: 360 IEKLIEK 366
           IE+LI++
Sbjct: 358 IERLIKQ 364


>gi|82702922|ref|YP_412488.1| DEAD/DEAH box helicase-like [Nitrosospira multiformis ATCC 25196]
 gi|82410987|gb|ABB75096.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
           25196]
          Length = 472

 Score =  322 bits (824), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 165/370 (44%), Positives = 231/370 (62%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L P ++ A+ DAGY  PTPIQ + IP +L  HDV   AQTGTGKTA+F+LP L
Sbjct: 1   MSFESLNLHPLILKAINDAGYTSPTPIQEQAIPELLTGHDVLASAQTGTGKTAAFMLPAL 60

Query: 61  TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L    + R R PR L+L PTRELA QV++   KYGK      V  ++GG+P+  QNK 
Sbjct: 61  HRLASPSQVRSRGPRVLVLTPTRELALQVSEATAKYGKYLPRAKVVSILGGMPYPLQNKL 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+L+ TPGR++DH  RG++  + +E+LV+DEADRMLDMGFI  ++ I S  P TR
Sbjct: 121 LSQVVDILVATPGRLIDHIQRGRIDFSRLEMLVLDEADRMLDMGFIEDVERIASATPATR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+   +  V+   L +PKRI+V T  +    IE          S K  LL  L
Sbjct: 181 QTLLFSATLDSAMDNVAARLLNSPKRIQVATSKARLNNIEQRL-HYVDDISHKNQLLDHL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+  + +K  I+F   K++   L   L  QG +  A+HG++ QR R + L   ++G I++
Sbjct: 240 LRDIE-LKQAIVFTATKRDADMLADGLSAQGHAAAALHGDMSQRDRNRTLIKLRQGGIRV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + HV NFD+P  AE+Y+HRIGRTGRAG  G A +  + +D  H+ 
Sbjct: 299 LVATDVAARGIDVAGITHVINFDLPKFAEDYVHRIGRTGRAGASGIAVSFASSKDGIHLK 358

Query: 359 AIEKLIEKKV 368
            IE+   +++
Sbjct: 359 KIERFTGQRI 368


>gi|167835963|ref|ZP_02462846.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis MSMB43]
          Length = 397

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 173/395 (43%), Positives = 245/395 (62%), Gaps = 18/395 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+ +++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q  
Sbjct: 73  LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L++P+ IEV   ++ A T+    V   A+  K+ A+++ 
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRDPQTIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIVELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
             IEKLI++ +      L +L     ++D+ +H H
Sbjct: 370 ADIEKLIKRTL-----SLETL-----ELDLPRHRH 394


>gi|83720702|ref|YP_441535.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
 gi|83654527|gb|ABC38590.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
          Length = 571

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 173/395 (43%), Positives = 244/395 (61%), Gaps = 18/395 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+ +++ A+ + GY  PTPIQ   IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 103 FDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 162

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q  
Sbjct: 163 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 222

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 223 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 282

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   ++ A T+    V   A+  K+ A+++ 
Sbjct: 283 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 340

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 341 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIE 399

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 400 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 459

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
             IEKLI++ +      L +L     ++D+ +H H
Sbjct: 460 ADIEKLIKRTL-----SLETL-----ELDLPRHRH 484


>gi|241663607|ref|YP_002981967.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12D]
 gi|240865634|gb|ACS63295.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
          Length = 493

 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 170/373 (45%), Positives = 238/373 (63%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL P V+ A+ ++GY KPTPIQ   IP+V    DV G AQTGTGKTA F LP++  
Sbjct: 15  FDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGRDVMGAAQTGTGKTAGFSLPIIHN 74

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QV DN  KY K   L  A++ GG+    Q +
Sbjct: 75  LLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTE 134

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++L+ TPGR+LDH  +  + ++ + +LV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 135 QLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAH 194

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++ ++L++P+ IEV   ++TAE +    + T     K+ AL+  
Sbjct: 195 RQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATAENVRQV-IYTVPDNHKQAALVHL 253

Query: 238 LLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L Q   Q   +  I+F N K     L  +LE++G +  AIHG+  Q  RM+ L  FK+GT
Sbjct: 254 LKQRAEQGLPRQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGT 313

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGLDI  +  V NFD+P  AE+Y+HRIGRTGRAG  G A +L A  D +
Sbjct: 314 VDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDER 373

Query: 356 HIDAIEKLIEKKV 368
            +  IEKLI++ +
Sbjct: 374 LLADIEKLIKRNL 386


>gi|56477991|ref|YP_159580.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
 gi|56314034|emb|CAI08679.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
          Length = 491

 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 170/374 (45%), Positives = 238/374 (63%), Gaps = 10/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGL P+++ AV ++GY  PTPIQ + IP+VL   DV G AQTGTGKTA F LP+L
Sbjct: 1   MSFADLGLIPELLRAVAESGYTTPTPIQQQAIPVVLSGRDVMGGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L +  +    P     R LIL PTRELA QV ++ + Y K   L    + GG+  + Q
Sbjct: 61  QRLARHASTSTSPARHPVRALILAPTRELAMQVFESVKTYSKYVPLRSTCIYGGVDMKPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L  G ++++ TPGR+LDH  +  + +  +E+LV+DEADRMLDMGFIP I+ I  L+P
Sbjct: 121 IQDLRNGIEIVVATPGRLLDHVQQKTIQLGQVEMLVLDEADRMLDMGFIPDIRRILDLLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ+LLFSAT +DE++K+++  L+ P+ IEV   +  +ETI H      A   +   LL
Sbjct: 181 AARQSLLFSATFSDEIKKLADQMLKEPQLIEVARRNMVSETITHRVHPVSAGLKRN--LL 238

Query: 236 QQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             LL+ + DT    ++F   K     L H LE+ G +  AIHG+  Q  R   L  FK G
Sbjct: 239 AHLLRHEPDT--QALVFVATKLACSRLAHFLERHGIAADAIHGDKGQAQRTDTLEAFKSG 296

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            ++++VA+D+AARGLDI D+  V NF++P+ AE+Y+HRIGRTGRAGR G A +LV+ E+ 
Sbjct: 297 KLRVLVATDVAARGLDIDDLPSVINFELPHTAEDYVHRIGRTGRAGRQGNAVSLVSAEER 356

Query: 355 KHIDAIEKLIEKKV 368
            H+  IEKLI+ ++
Sbjct: 357 HHLAEIEKLIKLQI 370


>gi|254513899|ref|ZP_05125960.1| ATP-dependent rna helicase, dead box family [gamma proteobacterium
           NOR5-3]
 gi|219676142|gb|EED32507.1| ATP-dependent rna helicase, dead box family [gamma proteobacterium
           NOR5-3]
          Length = 435

 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 172/369 (46%), Positives = 233/369 (63%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LGL P +  AV D GY +PTPIQIK+IPLVL   DV   AQTGTGKTA+FVLP+L
Sbjct: 1   MNFDTLGLLPDLAKAVNDRGYTEPTPIQIKSIPLVLDGQDVLAAAQTGTGKTAAFVLPIL 60

Query: 61  TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L   G A+    RTL+L PTRELAAQV  + E YG+  +L  A++ GG+  E Q   L
Sbjct: 61  QRLAFVGLAKAGQVRTLVLTPTRELAAQVHASVEAYGQYLDLRSAVVFGGVKAEPQIAAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D L+ TPGR+LD   +G +  + +E+LV+DEADRMLDMGFI  I+ I   +P  RQ
Sbjct: 121 ARGVDTLVATPGRLLDLAQQGAVDFSALEVLVLDEADRMLDMGFIHDIRRIVDQLPENRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT ++E++ ++  +L +P  +EV   +ST E ++   +A      +K  LL  LL
Sbjct: 181 TLMFSATFSNEIRALAAQYLIDPVSVEVAAANSTTELVQQ--MAYPVDRDRKTDLLIHLL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +IFC  K     L   L   GF    IHGN  Q +R + L  FK G +QL+
Sbjct: 239 KYHQ-WSQVLIFCRTKHGANRLTKKLLAAGFKAAPIHGNKSQNARQRALDEFKTGKLQLL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+P   ++Y+HRIGRTGRAG  G++ +L+A ED+  +  
Sbjct: 298 VATDIAARGLDINQLPEVVNFDLPCVPQDYVHRIGRTGRAGATGRSHSLLASEDLPLLQG 357

Query: 360 IEKLIEKKV 368
           IE+LI+K +
Sbjct: 358 IERLIQKAI 366


>gi|206560771|ref|YP_002231536.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
           J2315]
 gi|198036813|emb|CAR52713.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
           J2315]
          Length = 494

 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 171/373 (45%), Positives = 238/373 (63%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+  ++ A+ + GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q+ 
Sbjct: 73  LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQSA 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +    V   A+  K+ A++ Q
Sbjct: 193 RQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKQAAVV-Q 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +  +K  I+FCN K     L  +LE+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 LLRDRG-LKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKKVDW 370
             IEKLI++ ++ 
Sbjct: 370 ADIEKLIKRPLEM 382


>gi|299132277|ref|ZP_07025472.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
 gi|298592414|gb|EFI52614.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
          Length = 509

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 165/364 (45%), Positives = 233/364 (64%), Gaps = 5/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL+  +  A+ +  YV PTPIQ +TIP+ +   DV GIAQTGTGKTASF LP+L  
Sbjct: 4   FQDFGLADPISRALREENYVTPTPIQAQTIPIAITGRDVVGIAQTGTGKTASFALPILHR 63

Query: 63  LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L + R R   +  R L+L PTREL+ Q+ D+F  YG++  L+ AL IGG+P   Q + + 
Sbjct: 64  LLENRVRPQPKTCRVLVLSPTRELSGQILDSFNAYGRHLRLSAALAIGGVPMGRQVRAMM 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G +VL+ TPGR+LD      + +N +E LV+DEADRMLDMGFI  I+ I + +P  RQT
Sbjct: 124 QGVEVLVATPGRLLDLVQGNAVRLNQVEFLVLDEADRMLDMGFINDIRKIVAKLPVKRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  ++ +++E+ L++P R+ V   SSTAE I    +     +S K A L +LL+
Sbjct: 184 LFFSATMPKDIAELAEHMLRDPARVAVTPVSSTAERITQRII--QLDHSAKPATLSELLK 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S + +   ++F   K     +   L K G    AIHGN  Q  R ++L++F+ G I+ +V
Sbjct: 242 S-EPVNRALVFTRTKHGADKVVRGLVKAGIPSEAIHGNKSQNHRERVLASFRNGDIRTLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HVFNFD+PN  E Y+HRIGRT RAG  G A +LVA E+  ++  I
Sbjct: 301 ATDIAARGIDVDGITHVFNFDLPNIPETYVHRIGRTARAGADGTAISLVAGEENTYLRDI 360

Query: 361 EKLI 364
           E+LI
Sbjct: 361 ERLI 364


>gi|254443370|ref|ZP_05056846.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198257678|gb|EDY81986.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 469

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 181/413 (43%), Positives = 251/413 (60%), Gaps = 12/413 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL P++V AV   GY +P+PIQ K IP +L+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MPFATLGLRPEIVSAVTAKGYTEPSPIQAKAIPAILEGRDVLGGAQTGTGKTAAFSLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   + + PR LIL PTRELAAQV  +   YGK  +L  A   GG+    Q  KL 
Sbjct: 61  QRLSESEFKNKRPRALILAPTRELAAQVHQSILDYGKGVDLHSACFFGGVNINPQISKLR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+++ TPGR+LD   R +  +  IE LV+DEADRMLDMGFI  I+ I  L+P  RQ 
Sbjct: 121 RGLDIIVATPGRLLDLCQRREANLGAIETLVLDEADRMLDMGFIHDIRKILKLLPHDRQN 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT   +++K++++ L+NP  +EV   +STA+ I      +  Q +K+ A L  L++
Sbjct: 181 LFFSATYAKDVKKLADSILRNPVEVEVAPRNSTADQIAQ-EAYSIGQKNKREA-LSNLIK 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  K  ++F   K     L   L+  G +  AIHGN  Q +R + L +FK   I+++V
Sbjct: 239 DGD-WKQVLVFTRTKHGANRLAKQLDSDGITAAAIHGNKSQSARERALQDFKTNYIRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV NF++PN  E+Y+HRIGRTGRAG+ GKA +LV  E+  ++  I
Sbjct: 298 ATDIAARGIDIIDLPHVVNFELPNIPEDYVHRIGRTGRAGKKGKAISLVCSEEEAYLVDI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           EK+++++V     +LS    P  KI    H   R  NP   K T   R  + +
Sbjct: 358 EKVLKREVPLF--ELS----PRGKIG---HQVQRIANPKKPKKTAVSRPPRQH 401


>gi|302879666|ref|YP_003848230.1| DEAD/DEAH box helicase domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302582455|gb|ADL56466.1| DEAD/DEAH box helicase domain protein [Gallionella
           capsiferriformans ES-2]
          Length = 504

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 178/406 (43%), Positives = 248/406 (61%), Gaps = 14/406 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA L L+  ++ A+ DAGY +PTP+Q + IPLVL   D+   AQTGTGKTA F LP+L
Sbjct: 10  VTFASLNLAEPIMRAIADAGYTQPTPVQAQAIPLVLAGGDLLAGAQTGTGKTAGFTLPVL 69

Query: 61  TILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L    A       PR LIL PTRELAAQV ++ + YGK  +L   ++ GG+    Q K
Sbjct: 70  HLLNSRPAANPGAGRPRCLILTPTRELAAQVEESVQTYGKYLSLKSLVMFGGVNINPQIK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L    D+L+ TPGR+LDH  +  L ++ +EIL++DEADRMLDMGFI  I+ I +L+P T
Sbjct: 130 SLRGQVDILVATPGRLLDHVGQKTLDLSAVEILILDEADRMLDMGFIRDIKKILALLPKT 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT ++E++ +S+  L NP  +EV   ++T+E +    V   AQ   K  LL  
Sbjct: 190 RQNLLFSATFSEEIKTLSDGLLNNPGFVEVARRNTTSELVAQT-VHMVAQ-KLKSHLLSH 247

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++  D  K  ++F   K     L   L   G    AIHGN  Q +R K LS FK+GT+ 
Sbjct: 248 LIKHND-WKQVLVFTRTKHGANRLAEKLNADGIPAAAIHGNKSQSARTKALSQFKDGTMP 306

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAG +G A +LV  E+++H+
Sbjct: 307 VLVATDIAARGLDIDMLPHVVNFELPNVPEDYVHRIGRTGRAGSNGAAISLVDSEELQHL 366

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLE------KIDIAQHNHARKNN 397
             IE+LI+ ++  +  D  S  PP        +    QH   R +N
Sbjct: 367 KDIERLIKTQIPRIAID--SFVPPTHIPPEAPRPPRPQHGQKRHSN 410


>gi|262275389|ref|ZP_06053199.1| ATP-dependent RNA helicase RhlE [Grimontia hollisae CIP 101886]
 gi|262220634|gb|EEY71949.1| ATP-dependent RNA helicase RhlE [Grimontia hollisae CIP 101886]
          Length = 436

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 163/367 (44%), Positives = 236/367 (64%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS  ++ A+ + GY  P+PIQ++ IP VL+  DV   AQTGTGKTA FVLP+L
Sbjct: 1   MGFTELGLSAPILRAIQEKGYDTPSPIQMQAIPAVLEGKDVMAAAQTGTGKTAGFVLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G R R    R LIL PTRELAAQ+ +N   Y ++  L  +++ GG+    Q   L
Sbjct: 61  ERLSNGGRTRPNHVRALILTPTRELAAQIHENAVVYSRHLPLRSSVVFGGVKINPQMMAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD + +  +  + +E+LV+DEADRMLDMGF   I+ I  L+P  RQ
Sbjct: 121 RKGTDILVATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFFRDIKKILDLLPKNRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT +DE++ +++  + NP  I V   +STA T+E C     A   KK A+L +L+
Sbjct: 181 SLLFSATFSDEIRNLAKGLVNNPVEISVTPANSTARTVEQCIYP--ADKKKKPAMLSKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  K  ++F   K     L   L ++G +   IHGN  Q +R K L++FK G ++++
Sbjct: 239 KDGD-WKQVLVFTRTKHGANKLARFLNEEGITAAPIHGNKSQSARTKALADFKTGDVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P+ AE+Y+HRIGRTGRAG  GKA +LV  ++   +  
Sbjct: 298 VATDIAARGIDIPQLPQVVNFEIPHVAEDYVHRIGRTGRAGEPGKAISLVCADEADDLFG 357

Query: 360 IEKLIEK 366
           IE+LI++
Sbjct: 358 IERLIQQ 364


>gi|56477513|ref|YP_159102.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
 gi|56313556|emb|CAI08201.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
          Length = 508

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 170/405 (41%), Positives = 249/405 (61%), Gaps = 16/405 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA LGL+  ++ A+ ++GY  PTPIQ + IPLVL   D+   AQTGTGKTA F LP+L 
Sbjct: 6   NFAGLGLAEPLLRAISESGYTTPTPIQAQAIPLVLAGGDLLAAAQTGTGKTAGFTLPVLH 65

Query: 62  ILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L    A   +   PR LIL PTRELAAQV ++   YGK+   T  ++ GG+    Q + 
Sbjct: 66  RLSAAPAANPKAGRPRCLILTPTRELAAQVEESVRTYGKHLPTTSMVMFGGVGINPQIQA 125

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++  D+L+ TPGR+LDH  +  L ++ +EIL++DEADRMLDMGFI  I+ I +L+P  R
Sbjct: 126 LKKRVDILVATPGRLLDHVGQKTLDLSGVEILILDEADRMLDMGFIRDIRKILALLPKQR 185

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +DE++ ++   L NP  +EV   ++ +E ++   V + AQ  K+  L+   
Sbjct: 186 QNLLFSATFSDEIRSLANGLLHNPGCVEVARRNTASELVQQS-VYSVAQKQKRDLLVH-- 242

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  Q+     ++F   K     L   L K G    AIHGN  Q +R + L+ FK+G++ +
Sbjct: 243 LVKQNDWHQVLVFTRTKHGANKLAEYLAKHGIPSAAIHGNKSQSARTRALAEFKDGSLPV 302

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAG  G A + V  E+ +H+ 
Sbjct: 303 LVATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGSSGAAVSFVDSEERQHLT 362

Query: 359 AIEKLIEKKVDW----------LNGDLSSLNPPLEKIDIAQHNHA 393
           AIE+LI++ +D           ++ + S   PP +    ++HN+A
Sbjct: 363 AIERLIKRTIDREALPAFAIAPVDPNESDARPPRQPRQPSRHNNA 407


>gi|227538144|ref|ZP_03968193.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241987|gb|EEI92002.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 435

 Score =  320 bits (821), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 162/381 (42%), Positives = 243/381 (63%), Gaps = 5/381 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL L   ++ A+  +GY  PTPIQ + IP++ QR D+   AQTGTGKTA+F +P+L
Sbjct: 18  LQFKDLKLIAPILKALEASGYQNPTPIQEQAIPIIFQRKDLLACAQTGTGKTAAFAIPIL 77

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L   + +   +  RTL+L PTRELA Q+ +NF+ Y K   +   ++ GG+  + Q   
Sbjct: 78  QMLTYSKEKTAQKRIRTLVLTPTRELAIQIKENFDAYSKELPIRNLVIYGGVGQQPQRDA 137

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+LI TPGR+LD +N+G + +  +E  V+DEADRMLDMGFI  ++ + S++P  R
Sbjct: 138 LRKGIDILIATPGRLLDLYNQGFIDLKQLEYFVLDEADRMLDMGFIHDVKKVISIIPKKR 197

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM  E+QK++ + L+ P ++EV   S+TAE I+      +   S K  LL  L
Sbjct: 198 QTLLFSATMPAEIQKLASHILEEPSKVEVTPESTTAEKIQQSVY--FVSKSDKRHLLTHL 255

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+S++ +++ ++F   K     +   L KQG    AIHGN  Q +R   LSNFK+  +++
Sbjct: 256 LKSEN-IEHTLVFSRTKHGADRIAKDLAKQGIQAAAIHGNKSQSARQNALSNFKDRKLRV 314

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI D+ +V NFD+PN  E+Y+HRIGRTGRAG+ GKA +    E+  ++ 
Sbjct: 315 LVATDIAARGIDIDDLSYVINFDLPNIPESYVHRIGRTGRAGKDGKAISFCDDEEYAYLL 374

Query: 359 AIEKLIEKKVDWLNGDLSSLN 379
            IEK I  ++  +     SL+
Sbjct: 375 DIEKSIRMEIPRVEDQPYSLH 395


>gi|78067127|ref|YP_369896.1| DEAD/DEAH box helicase-like [Burkholderia sp. 383]
 gi|77967872|gb|ABB09252.1| DEAD/DEAH box helicase-like protein [Burkholderia sp. 383]
          Length = 527

 Score =  320 bits (821), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 178/400 (44%), Positives = 247/400 (61%), Gaps = 17/400 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+  ++ A+ + GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 35  FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 94

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q  
Sbjct: 95  LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 154

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG +VLI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 155 ELRRGVEVLIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 214

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +    V   A+  K+ A++ Q
Sbjct: 215 RQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKQAAVV-Q 272

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +  +K  I+FCN K     L  +LE+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 273 LLRDRG-LKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIE 331

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 332 ALVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 391

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
             IEKLI++ ++       +L+ P      A+H H  + N
Sbjct: 392 ADIEKLIKRPLEM---QTLALDKP------ARHRHDERGN 422


>gi|300690871|ref|YP_003751866.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
           PSI07]
 gi|299077931|emb|CBJ50571.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
           PSI07]
          Length = 495

 Score =  320 bits (821), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 168/373 (45%), Positives = 239/373 (64%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL P ++ A+ ++GY +PTPIQ   IP+V+   DV G AQTGTGKTA F LP++  
Sbjct: 17  FDTFGLHPDILRALAESGYTRPTPIQAAAIPVVVAGRDVMGAAQTGTGKTAGFSLPIIQN 76

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QV DN  KYGK   L  A++ GG+    Q +
Sbjct: 77  LLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYGKYTALRSAVVFGGVDMNPQTE 136

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++L+ TPGR+LDH  +  + ++ + +LV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 137 QLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAH 196

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++ ++L++P+ IEV   ++TA+ +    + T     K+ AL+  
Sbjct: 197 RQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQV-IYTVPDGHKQAALVHL 255

Query: 238 LLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L Q   Q      I+F N K     L  +LE++G +  AIHG+  Q  RM+ L  FK+GT
Sbjct: 256 LRQRAEQGLPSQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGT 315

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGLDI  +  V NFD+P  AE+Y+HRIGRTGRAG  G A +L A  D +
Sbjct: 316 VDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDER 375

Query: 356 HIDAIEKLIEKKV 368
            +  IEKLI++ +
Sbjct: 376 LLADIEKLIKRNL 388


>gi|24374899|ref|NP_718942.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24349603|gb|AAN56386.1|AE015775_3 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 409

 Score =  320 bits (821), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 176/404 (43%), Positives = 251/404 (62%), Gaps = 12/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L+ ++V  + + GY +PTPIQ++ IP +L + DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL 60

Query: 61  TIL---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L    +     +  R L+L PTRELA QV  +F KY K  ++ V +  GG+  EAQ  
Sbjct: 61  QLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
               G DVLI TPGR+LDH  +G L +N +  LV DEADRMLDMGF+  IQ +   VP  
Sbjct: 121 VFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT+ D +   S+N L++PKRIEV  P++TA  IE    A  +   +K   +  
Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDS--DRKTEFVSH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++S++  +  +IF   K+ V  L   L K G +  + HG++ Q +R K+L  FK+G +Q
Sbjct: 239 LVRSKN-WQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ +V NF++P  AE+YIHRIGRTGRAG  G A TL ++ED   +
Sbjct: 298 VLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLL 357

Query: 358 DAIEKLIEKKV--DWLNG---DLSSLNP-PLEKIDIAQHNHARK 395
           + +E L++K++   W  G   D + + P P      AQ   A+K
Sbjct: 358 EEVETLLDKRLPQQWYPGFEPDFNKMLPEPRRNSKAAQKQRAKK 401


>gi|253997010|ref|YP_003049074.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera
           mobilis JLW8]
 gi|253983689|gb|ACT48547.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8]
          Length = 502

 Score =  320 bits (821), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 188/479 (39%), Positives = 278/479 (58%), Gaps = 30/479 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  ++ A+ DAGY  PTPIQ   IPLVL   D+   AQTGTGKTA F LP+L +
Sbjct: 11  FDSLGLSEPILRAINDAGYSAPTPIQANAIPLVLSGGDLLAGAQTGTGKTAGFTLPILHL 70

Query: 63  LEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L K     A    PR L+L PTRELAAQ+ ++ + YGK+  LT  ++ GG+    Q  +L
Sbjct: 71  LSKKPRAEAAASRPRCLMLSPTRELAAQIEESVKTYGKHLPLTSTVIFGGVNANPQIARL 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++  D+L+ TPGR+LDH N+  + ++ IEILV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 131 KKPLDILVATPGRLLDHANQKNVDLSGIEILVLDEADRMLDMGFIRDIKKILAILPKQRQ 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT ++E++ +++  L NP  +EV   ++ +E +E   V    Q  K+  L+  L+
Sbjct: 191 NLLFSATFSEEIKALADGLLHNPGFVEVARRNTASELVEQT-VHMVPQAHKRD-LVTHLI 248

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  K  ++F   K     L   L K      AIHGN  Q +R K L+ FK+G+++++
Sbjct: 249 KHHD-WKQVLVFTRTKHGANRLAEKLIKDDIQAAAIHGNKSQGARTKALAQFKDGSMRVL 307

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV +E+IK +  
Sbjct: 308 VATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSSGAAVSLVDREEIKLLKD 367

Query: 360 IEKLIEKKVDWLN--GDLSSLNPPLEKIDIAQHNHARKNNP-------IPQKSTGFDRRK 410
           IEKLI++++  ++  G   + NP  E     +    ++  P        P K+      +
Sbjct: 368 IEKLIKREIPRVSVEGFTPAANPEPEAPRAPRPQQGQRRKPQENSKQATPAKNNAAAPSQ 427

Query: 411 KNYSSQ----KSHIPLKESEKISKLQQDI----QENDADSLGFRGNMPAFMLPKNRGKL 461
           +   SQ    +S  P+ E+ +   + Q      Q  +++  G RGN        NRG++
Sbjct: 428 QAKRSQPAQPRSQKPMSEAARHQAMPQSALFSPQPTNSNQRGNRGN-------SNRGQV 479


>gi|196231991|ref|ZP_03130847.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
 gi|196224113|gb|EDY18627.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
          Length = 405

 Score =  320 bits (821), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 167/370 (45%), Positives = 229/370 (61%), Gaps = 11/370 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D GL  +VV  V   GY+ PTPIQ++  P++L   D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MSFQDFGLLDEVVHGVQSMGYIDPTPIQLRAFPIILSGRDMMGSAQTGTGKTAAFALPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T L K    +R    LILEPTRELAAQV   F  Y +  ++ V L+ GG+ F +Q   L+
Sbjct: 61  TKL-KSHGDLR---ALILEPTRELAAQVETAFRDYSRFMDVQVGLVHGGVGFGSQRSMLQ 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GADVL+ TPGR+LD    G   + NI+ LV+DE DRMLDMGF+P ++ I   VP  RQT
Sbjct: 117 KGADVLVATPGRLLDFLEDGTANLKNIQYLVLDEVDRMLDMGFLPQVRRIVDRVPKERQT 176

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
           L FSAT+  EL+ +++  L++P+++E+    S AET+ H    VA   ++    ALL+  
Sbjct: 177 LFFSATLPPELETMTKWLLKDPEQVEIGARRSPAETVTHALYPVAKDQKFDLLIALLE-- 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +    + IIF + K     + H L+    SV  +H N  QR R   L+ FK G  ++
Sbjct: 235 ---RTKFDSAIIFTSTKIMADKVAHRLKDLKHSVAVLHSNRTQREREDALAGFKSGKYEV 291

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI  V HV N+DVP   E+Y+HRIGRTGRA   G AFT+   E++ H+ 
Sbjct: 292 MVATDIAARGLDIAGVSHVINYDVPQHPEDYVHRIGRTGRALLTGDAFTIFTAEELDHVR 351

Query: 359 AIEKLIEKKV 368
           +IE+ I  K+
Sbjct: 352 SIERFIGAKI 361


>gi|124267275|ref|YP_001021279.1| putative ATP-dependent RNA helicase 1 [Methylibium petroleiphilum
           PM1]
 gi|124260050|gb|ABM95044.1| putative ATP-dependent RNA helicase 1 [Methylibium petroleiphilum
           PM1]
          Length = 453

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 171/373 (45%), Positives = 243/373 (65%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+  ++ A++DAGY  PTPIQ + IP V+   D+   AQTGTGKTA FVLPML
Sbjct: 1   MSFKELGLAEPLLQAIVDAGYETPTPIQKQAIPAVMLGGDLLAGAQTGTGKTAGFVLPML 60

Query: 61  TILEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L        AR + P R LIL PTRELAAQV ++   YGK+  L+  ++ GG+  + Q
Sbjct: 61  HRLMARPAVKDARGKSPVRALILTPTRELAAQVEESVRIYGKHAKLSSMVMFGGVGMQPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L+RG D+L+ TPGR+LDH  +  L ++++EI V+DEADRMLDMGFI  I+ + ++VP
Sbjct: 121 IDRLKRGVDILVATPGRLLDHHQQRTLDLSHVEIFVLDEADRMLDMGFIHDIKKVLAIVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE++ +++  L +P+ IEV   +ST ETI            KK  LL
Sbjct: 181 KQKQSLLFSATFSDEIKTLADRLLNSPQVIEVARRNSTVETIAQKI--HPVDRDKKKELL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++SQD     ++FC  K     L   L  Q  +  AIHGN  Q +R K L++FK G 
Sbjct: 239 AHLIKSQD-WHQVLVFCRMKHGANRLTEYLNDQRITAMAIHGNKSQTARTKALADFKSGA 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARG+DI  + HV NF++PN +E+Y+HRIGRTGRAG  G+A +LV  ++  
Sbjct: 298 LQVLVATDIAARGIDIDQLPHVVNFELPNVSEDYVHRIGRTGRAGALGEAVSLVCVDEDG 357

Query: 356 HIDAIEKLIEKKV 368
            +  IEKLI++ +
Sbjct: 358 FLRDIEKLIKRSI 370


>gi|187479813|ref|YP_787838.1| ATP-dependent RNA helicase [Bordetella avium 197N]
 gi|115424400|emb|CAJ50953.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
          Length = 477

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 170/386 (44%), Positives = 242/386 (62%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  ++ A+ + GY  PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L +
Sbjct: 7   FADLGLADSLLRAIAETGYTAPTPIQAQAIPQVLRGGDLLAAAQTGTGKTAGFTLPILHM 66

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L + +   R    PR LIL PTREL AQVA++ + YGK+  LT  ++ GG+    Q   L
Sbjct: 67  LSQNKPAKRSAGRPRCLILTPTRELTAQVAESVQVYGKHTGLTSMVMFGGVNINPQISAL 126

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+L+ TPGR+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ + +L+P +RQ
Sbjct: 127 RKPVDILVATPGRLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKSRQ 186

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE+++++   L NP  + V TP +TA  +    V    Q  K+  L+  L+
Sbjct: 187 NLLFSATFSDEIRELARGVLHNPGEVSV-TPRNTATELVTQTVYLVDQAHKRD-LVSHLI 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK+G++ ++
Sbjct: 245 -SESGWHQVLVFTRTKHGANRLAEKLVKDGLSAAAIHGNKSQSARTRALAGFKDGSVAVL 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV   +IK + A
Sbjct: 304 VATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDSSEIKLLKA 363

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKI 385
           IE+LI+K +D    D     PP+  +
Sbjct: 364 IERLIKKTIDRKTVD--GWTPPVGAV 387


>gi|224370360|ref|YP_002604524.1| putative helicase of superfamily II [Desulfobacterium autotrophicum
           HRM2]
 gi|223693077|gb|ACN16360.1| putative helicase of superfamily II [Desulfobacterium autotrophicum
           HRM2]
          Length = 402

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 166/369 (44%), Positives = 238/369 (64%), Gaps = 5/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   GL  +++ AV   GY +PTPIQ + IP+VL+  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFEIFGLRAELLRAVAAEGYKEPTPIQDQAIPVVLRGEDVLAGAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L K   R   PR L+L PTRELAAQV  +FE  G++ +L   ++ GG+  + Q  KL+
Sbjct: 61  EMLSKTSKRTYTPRCLVLAPTRELAAQVQASFESLGRSLHLRSTVVFGGVGIQPQIDKLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+LDH  R  L ++ +EILV+DEADRMLDMGFI  I+ +  L+P  RQ 
Sbjct: 121 KGVDILVATPGRLLDHAGRRTLDLSKVEILVLDEADRMLDMGFIHDIKKVLKLLPGKRQN 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLL 239
           LLFSAT + E+++ ++  L NPK IEV+  +  A+ +     A Y  Q +KK  LL  L+
Sbjct: 181 LLFSATYSTEIKRFADGLLNNPKIIEVSASNKAADGVTQ---AVYPVQKTKKRELLSTLI 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++  K  ++F   K     L   L   G    AIHGN  Q +R + L++FK G+I+ +
Sbjct: 238 RNENWTKV-LVFTRTKHGANRLTKQLITDGIKAAAIHGNKSQSTRTRALADFKNGSIKAL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + HV N+D+PN  E+Y+HRIGRTGRAG  G A +LV  ++ K +  
Sbjct: 297 VATDIAARGLDIDMLPHVVNYDLPNVPEDYVHRIGRTGRAGATGIALSLVCSDEQKQLKE 356

Query: 360 IEKLIEKKV 368
           I++L++  +
Sbjct: 357 IQRLLKHNI 365


>gi|114330892|ref|YP_747114.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas
           eutropha C91]
 gi|114307906|gb|ABI59149.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91]
          Length = 455

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 164/365 (44%), Positives = 235/365 (64%), Gaps = 4/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L P +V AVL AGY  PTPIQ + IP ++  HDV   AQTGTGKTA+F+LP L
Sbjct: 1   MSFENLNLHPAIVKAVLAAGYTSPTPIQQQAIPELIAGHDVMASAQTGTGKTAAFMLPAL 60

Query: 61  TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L    + + R PR L+L PTRELA QV++   KYGK    + V  ++GG+P+  QNK 
Sbjct: 61  HRLATPAKIQGRGPRILVLTPTRELALQVSEAASKYGKFLPRVNVVSILGGMPYPLQNKL 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  DVL+ TPGR++DH  RG++  + +E+LV+DEADRMLDMGFI  ++ I S  P  R
Sbjct: 121 LSQVVDVLVATPGRLIDHIERGRIDFSRLEMLVLDEADRMLDMGFIHDVERIASSTPTNR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+   ++K++   L+ PKRI++ +  +  + IE   +      + K  LL  L
Sbjct: 181 QTLLFSATLDTAIEKIATRLLKMPKRIQIASQHAKLDHIEQR-MHYVDDLTHKNRLLDHL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L    T+K  I+F   K++  +L  +L  QG    A+HG++ QR R + L+  ++G +++
Sbjct: 240 L-CDTTIKQAIVFTATKRDADSLADNLSAQGHKAAAMHGDMTQRERTRTLTGLRQGRLKI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI D+ HV NFD+P  AE+Y+HRIGRTGRAG  G A +  + +D  H+ 
Sbjct: 299 LVATDVAARGIDIADITHVINFDLPKFAEDYVHRIGRTGRAGASGIAVSFASGKDGIHLK 358

Query: 359 AIEKL 363
            IE+ 
Sbjct: 359 RIERF 363


>gi|94498002|ref|ZP_01304566.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
 gi|94422585|gb|EAT07622.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
          Length = 459

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 162/371 (43%), Positives = 232/371 (62%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F DLGLS  ++ A+    Y  PTPIQ K IP++LQ HD+CGIAQTGTGKTA+F LP L
Sbjct: 1   MEFTDLGLSEPILKALSAKKYTAPTPIQQKAIPVLLQGHDLCGIAQTGTGKTAAFALPSL 60

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               +      VR  R L+L PTRELAAQ+A +F  YG+   L+V  + GG+P   Q K 
Sbjct: 61  DYFARNPKPTPVRGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVETVFGGVPINRQIKA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+++ TPGR+LD  ++    + + EI V+DEAD+M+DMGFI  ++ +  L+P  R
Sbjct: 121 LSQGVDIVVATPGRLLDLIDQRCFTIKDTEIFVLDEADQMMDMGFIHPLKRVAKLLPTDR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L FSATM  E++ ++  FL +P ++ V   S+TAE +     AT+   ++K ALL  +
Sbjct: 181 QNLFFSATMPKEIEALAGQFLNDPVKVSVAPQSTTAERVRQQ--ATFVNQAEKQALLHIV 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+++D +   +IF   K     +   LE  G    AIHGN  Q  R   L  F++G ++L
Sbjct: 239 LETED-IDRALIFTRTKHGADRVVRFLEGAGIDAFAIHGNKSQGQRTTALQAFRQGKVKL 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  V HV NF++PN  E Y+HRIGRT RAG  G A + VA ++  ++ 
Sbjct: 298 LVATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGAEGVAISFVADDERPYLK 357

Query: 359 AIEKLIEKKVD 369
           AIE+    K+D
Sbjct: 358 AIERATRVKLD 368


>gi|229828479|ref|ZP_04454548.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM
           14600]
 gi|229793073|gb|EEP29187.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM
           14600]
          Length = 538

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 162/387 (41%), Positives = 247/387 (63%), Gaps = 14/387 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++ GL   ++ A+  AGY +PTP+Q ++IP++L+  D+ G AQTGTGKTA+F LP+L
Sbjct: 62  LKFSEFGLKKDLLSAIRKAGYEEPTPVQEESIPVILEGRDMIGCAQTGTGKTAAFALPVL 121

Query: 61  ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              T+L++ R R      L+L PTRELA Q+ DNF+KYG+  +L    L GG     Q  
Sbjct: 122 HKLTLLKRPRVRA-----LVLTPTRELAIQIFDNFKKYGRYLHLRTVCLYGGAKRGPQIG 176

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RGAD+L+ TPGR+LD   +  + ++++EILV+DEADRMLDMGF+P +  I    P  
Sbjct: 177 ALRRGADILVATPGRLLDFMGQDLVDLSSVEILVLDEADRMLDMGFLPDVSRIVESTPSK 236

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL+FSATM  E++++++  L++P +++V   +  A+T+E   +  ++    K  ++  
Sbjct: 237 RQTLMFSATMEKEVRQLADRMLKDPVQVQVTPENEAADTVEQKLI--FSSREDKREIIAS 294

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL + + +++ I+F   K     L   L+++G    AIHG+  Q  R   L+ FK G ++
Sbjct: 295 LL-TDEAVESAIVFTRTKHGADKLSRELKRRGIESVAIHGDKTQGQRQDALNRFKSGKVR 353

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MVA+D+AARGLDIP + HVFN+DVP  A  YIHRIGRTGRAG  G A TL  + ++  +
Sbjct: 354 VMVATDVAARGLDIPKLSHVFNYDVPEEAGAYIHRIGRTGRAGESGIAITLCCEAELDAL 413

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEK 384
             +E+L+EK +  L    +  + PLE+
Sbjct: 414 REVEELLEKPIPELQ---TQWSLPLER 437


>gi|297539139|ref|YP_003674908.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera sp.
           301]
 gi|297258486|gb|ADI30331.1| DEAD/DEAH box helicase domain protein [Methylotenera sp. 301]
          Length = 532

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 172/376 (45%), Positives = 243/376 (64%), Gaps = 16/376 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +LGLS  ++ A+ DAGY  PTPIQ K IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 7   LNFNELGLSEPILRAINDAGYTTPTPIQSKAIPQVLSGGDLLAGAQTGTGKTAGFTLPIL 66

Query: 61  TILE--------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            +L         KGR     PR L+L PTRELAAQ+ ++ + YGK   LT  ++ GG+  
Sbjct: 67  HLLSQKPLSEVVKGR-----PRCLMLTPTRELAAQIEESVKVYGKFLPLTSTVIFGGVNA 121

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q  +L++  D+L+ TPGR+LDH N+  + ++ IEILV+DEADRMLDMGFI  I+ I +
Sbjct: 122 NPQIARLKKPLDILVATPGRLLDHANQKNVDLSGIEILVLDEADRMLDMGFIRDIKKILA 181

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           ++P  RQ LLFSAT +DE++ +++  L NP  +EV   ++ +E +E   V   AQ  K+ 
Sbjct: 182 MLPKQRQNLLFSATFSDEIKALADGLLHNPGFVEVARRNTASELVEQT-VHMVAQGHKR- 239

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L+  L+Q  D  +  +IF   K     L   L K G    AIHGN  Q +R K L+ FK
Sbjct: 240 ELMSHLIQQND-WQQVLIFTRTKHGANRLAEKLVKDGIQSAAIHGNKSQSARTKALAQFK 298

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +GT++++VA+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV +E
Sbjct: 299 DGTMRVLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSSGAAVSLVDRE 358

Query: 353 DIKHIDAIEKLIEKKV 368
           ++K +  IEKLI++++
Sbjct: 359 ELKLLKDIEKLIKREI 374


>gi|254251800|ref|ZP_04945118.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
 gi|124894409|gb|EAY68289.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
          Length = 511

 Score =  320 bits (819), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 169/373 (45%), Positives = 235/373 (63%), Gaps = 8/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F   GL+  ++ A+ + GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 34  NFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93

Query: 62  IL----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q 
Sbjct: 94  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 153

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 154 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 213

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +    V   A+  K+ A++Q
Sbjct: 214 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKQAAVVQ 272

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L  +  +K  I+FCN K     L   LE+ G    AIHG+  Q  RM+ L  FK G +
Sbjct: 273 --LLRERGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEV 330

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 331 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 390

Query: 357 IDAIEKLIEKKVD 369
           +  IEKLI++ ++
Sbjct: 391 LADIEKLIKRPLE 403


>gi|254481835|ref|ZP_05095078.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214037964|gb|EEB78628.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 435

 Score =  320 bits (819), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 168/376 (44%), Positives = 242/376 (64%), Gaps = 6/376 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+   GY +P+PIQ K IP VL   DV   AQTGTGKTA+F LP+L
Sbjct: 1   MTFDQLGLSSALLRAIEKKGYSEPSPIQAKAIPAVLSGKDVMAAAQTGTGKTAAFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L      +    R LIL PTRELAAQVA +   YG +  L  A++ GG+   +Q  +L
Sbjct: 61  QRLNASAPIKPHRIRALILTPTRELAAQVAQSVSTYGLHTPLKSAVVFGGVKINSQIAQL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+LI TPGR+LD   +G++    +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 RRGVDILIATPGRLLDLHGQGEVDFGELEILVLDEADRMLDMGFIHDIRRILKLLPAERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT   E++++++ FLQ+P  +EV + ++TA+ +E           +K ALL++L+
Sbjct: 181 NLLFSATFAAEIRELTKKFLQDPIEVEVASRNATADKVEQWVYPV--DKKRKGALLRELV 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +      ++F   K     L   L+K G    AIHGN  Q +R + L +FK G ++++
Sbjct: 239 E-EKCWTQVLVFSRTKHGANRLAQQLDKAGIEATAIHGNKSQGARTRALEDFKSGRLRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN A++Y+HRIGRTGRAG  GKA++LV  ++IK ++ 
Sbjct: 298 VATDIAARGLDIAQLPQVVNFDLPNVAQDYVHRIGRTGRAGASGKAYSLVCADEIKQLND 357

Query: 360 IEKLIEKKV--DWLNG 373
           IE+LI++ +  ++++G
Sbjct: 358 IEQLIQRHLPREYIDG 373


>gi|161524137|ref|YP_001579149.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|160341566|gb|ABX14652.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
           ATCC 17616]
          Length = 509

 Score =  320 bits (819), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 171/372 (45%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+  ++ A+ + GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 35  FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 94

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q  
Sbjct: 95  LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 154

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 155 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 214

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +    V   A+  K+ A++ Q
Sbjct: 215 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKQAAVV-Q 272

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +  +K  I+FCN K     L   LE+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 273 LLRDRG-LKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEIE 331

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 332 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 391

Query: 358 DAIEKLIEKKVD 369
             IEKLI++ ++
Sbjct: 392 ADIEKLIKRPLE 403


>gi|33591417|ref|NP_879061.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|33571059|emb|CAE40549.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|332380818|gb|AEE65665.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
          Length = 476

 Score =  320 bits (819), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 182/445 (40%), Positives = 261/445 (58%), Gaps = 14/445 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL+  ++ A+ D GY  PTPIQ + IPLVLQ  D+   AQTGTGKTA F LP+L
Sbjct: 5   ISFADLGLADSLLRAIADTGYTAPTPIQAQAIPLVLQGGDLLAAAQTGTGKTAGFTLPIL 64

Query: 61  TILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L + +   R    PR LIL PTREL AQVA++ + YGK  +L+  ++ GG+    Q  
Sbjct: 65  HRLMQTKPAARKPGRPRCLILTPTRELTAQVAESVQTYGKYASLSSMVMFGGVNINPQIS 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++  D+L+ TPGR+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ + +L+P  
Sbjct: 125 ALKKPLDILVATPGRLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L +P  + V TP +TA  +    V    Q+ K+  L+  
Sbjct: 185 RQNLLFSATFSDEIRSLARGVLNDPGEVSV-TPRNTATELVTQTVHLVEQHHKRD-LVSH 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++ +      ++F   K     L   L K G S  AIHGN  Q +R + LS FK+G++ 
Sbjct: 243 LIR-ESGWHQVLVFTRTKHGANRLAEKLVKDGLSAVAIHGNKSQSARTRALSGFKDGSVA 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV   +IK +
Sbjct: 302 VLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDDSEIKLL 361

Query: 358 DAIEKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            AIE+LI+K ++   ++G       P  +    +   A  +N  PQ   G  RR      
Sbjct: 362 KAIERLIKKPIERRAVDGWTPPAGGPTAEDRADRGQRAGGDNRAPQARDG-QRRATGAHP 420

Query: 416 QKSHIPLKESEKISKLQQDIQENDA 440
           Q S          +  + D + NDA
Sbjct: 421 QGS-----APRNAAGPRADAKRNDA 440


>gi|119946865|ref|YP_944545.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119865469|gb|ABM04946.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 429

 Score =  320 bits (819), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 163/369 (44%), Positives = 238/369 (64%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   ++ AV + GY +P+PIQ + IP +L+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFDLLGLPDSLLKAVKEQGYTEPSPIQAQAIPAILEGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           T+LEKG R +    R L+L PTRELAAQV  +   YGKN  L  A++ GG+    Q + L
Sbjct: 61  TLLEKGNRPKPNQVRALVLTPTRELAAQVHASVATYGKNMPLRSAVVFGGVKINPQMQIL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DVL+ TPGR++D +N+  +    +E+L++DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 RQGVDVLVATPGRLIDLYNQNAVSFKQLEVLILDEADRMLDMGFIHDIKRILAVLPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + +++++++  + NP  I V+  ++TAE +           +KK  +L  L+
Sbjct: 181 NLLFSATFSPDIRRLAKGLVNNPVEISVSPRNTTAENVTQTVYEV--DKTKKSIVLSTLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  +  ++F   K     L  SLE +G +  AIHGN  Q +R + L+ FKEG ++ +
Sbjct: 239 KQND-WQQVLVFVKTKHGANRLVKSLEGRGITAAAIHGNKSQAARTRALAGFKEGQVRAL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V NFD+P+ +E+Y+HRIGRTGRAG  G+A +LV  E+ K +  
Sbjct: 298 VATDIAARGIDIDQLPQVVNFDLPHVSEDYVHRIGRTGRAGNEGQALSLVCNEEFKLLKD 357

Query: 360 IEKLIEKKV 368
           IEKLI+K +
Sbjct: 358 IEKLIKKVI 366


>gi|254472453|ref|ZP_05085853.1| ATP-dependent rna helicase, dead/deah box family [Pseudovibrio sp.
           JE062]
 gi|211958736|gb|EEA93936.1| ATP-dependent rna helicase, dead/deah box family [Pseudovibrio sp.
           JE062]
          Length = 453

 Score =  320 bits (819), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 162/374 (43%), Positives = 229/374 (61%), Gaps = 5/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LG++     A+   GY +PTPIQ   IP +L   D+ G+AQTGTGKTA+F +P+L 
Sbjct: 3   DFDKLGVAKPFQIALKSKGYSEPTPIQENAIPYILDGKDLLGLAQTGTGKTAAFAVPLLQ 62

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L + R R   +  R+LIL PTRELA Q+  N + Y     +  + ++GG+PF  Q   L
Sbjct: 63  RLLESRYRAAPKSVRSLILTPTRELADQITKNIKAYAGRTKMYTSCVVGGVPFPPQFHAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG DVL+ TPGR+LD   +  +  + +EI V+DEAD+MLD+GFI  ++ I  L+P  RQ
Sbjct: 123 QRGLDVLVATPGRLLDLHRKNGVSFDELEIFVLDEADQMLDLGFIAELEEIAYLLPKKRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM  E++ +SE FL NP  +    P++T ET+       + +   K  LL++LL
Sbjct: 183 TLFFSATMPREIRDLSERFLTNPVEVSTAPPATTVETVTQQIA--HLEKDAKFPLLKELL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +D  +  ++F   KK    L   L   G    AIHG++ Q  R K L  FK G ++ +
Sbjct: 241 E-KDECERALVFTLTKKGSARLAARLNADGVPAEAIHGDMSQAERQKTLDKFKRGKLKTL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ D+ HV NFD+PN  ENY+HRIGRT RAG+ G A T    ED   + A
Sbjct: 300 VATDVAARGIDVSDISHVINFDMPNATENYVHRIGRTARAGKSGTAITFCLPEDRGMLRA 359

Query: 360 IEKLIEKKVDWLNG 373
           I+KLI KK+  ++G
Sbjct: 360 IQKLIGKKIAEMDG 373


>gi|317970136|ref|ZP_07971526.1| putative ATP-dependent RNA helicase [Synechococcus sp. CB0205]
          Length = 436

 Score =  320 bits (819), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 167/367 (45%), Positives = 234/367 (63%), Gaps = 4/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   +V AVL  GY +P+ IQ + IP VL   DV   AQTGTGKTA F LPML  
Sbjct: 15  FTALGLGRPIVEAVLQKGYSQPSSIQQQCIPAVLAGRDVMAAAQTGTGKTAGFTLPMLER 74

Query: 63  LEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G  AR R+ R+L+L PTRELAAQVADN + Y ++ +L   ++ GG+    Q  +L+ 
Sbjct: 75  LRHGPHARGRIVRSLVLTPTRELAAQVADNVKAYSRHLDLRSDVVFGGVKINPQITRLQA 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GAD+L+ TPGR++D   +G + ++ +EILV+DEADRMLDMGFI  IQ I  L+P  RQ L
Sbjct: 135 GADMLVATPGRLMDLVQQGAISLDRVEILVLDEADRMLDMGFIRDIQKILRLLPAKRQNL 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++   L  P +++V   + TA T+EH         ++K  LL  L+ S
Sbjct: 195 LFSATFETSIRRLATGLLHEPVQLQVTPENRTAATVEHIL--HPCDMARKPDLLCHLIAS 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D  +  ++F   K     +   L  +G +  AIHGN  Q +R + L+ FK G ++++VA
Sbjct: 253 ND-WQQVLVFSRTKHGANRVADRLSAEGMAAAAIHGNKSQGARTRALAGFKSGELRVLVA 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI  + HV N D+PN+AE+Y+HRIGRTGRAG  G A +LVA E+ + + AIE
Sbjct: 312 TDIAARGIDIHQLPHVVNLDLPNQAEDYVHRIGRTGRAGHSGHAVSLVAAEEHELLRAIE 371

Query: 362 KLIEKKV 368
           +L  KK+
Sbjct: 372 RLTGKKL 378


>gi|77360862|ref|YP_340437.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76875773|emb|CAI86994.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 466

 Score =  320 bits (819), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 158/365 (43%), Positives = 234/365 (64%), Gaps = 4/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AVL+ GY  PTPIQ + IP +++R DV   AQTGTGKTA F LP++
Sbjct: 1   MSFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLI 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G +A+    R LIL PTRELA QV++N E+Y K+ N++  ++ GG+    Q ++L
Sbjct: 61  ERLSSGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR++D  N+  +  +++E+LV+DEADRMLDMGFI  I+ + + +P  RQ
Sbjct: 121 RKGVDILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++ +++  + +P  I V   ++TA+++  C  A      +K ALL  L+
Sbjct: 181 NLMFSATFSDEIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAV--DKPRKTALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++ D  +  ++F   K     L   LE+      AIHGN  Q +R+K L  FK G ++++
Sbjct: 239 RTND-WQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLDI ++ HV N+D+PN  E+Y+HRIGRTGRAG  G A + V  ED   +  
Sbjct: 298 VATDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTTEDAVDLYG 357

Query: 360 IEKLI 364
           IE+ I
Sbjct: 358 IERFI 362


>gi|315179704|gb|ADT86618.1| hypothetical protein vfu_A01441 [Vibrio furnissii NCTC 11218]
          Length = 536

 Score =  319 bits (818), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 163/367 (44%), Positives = 235/367 (64%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ + IP VLQ  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILQAIKEKGYETPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G R R    R LIL PTRELAAQV +    Y ++  L+ A++ GG+    Q  +L
Sbjct: 61  ERLTGGPRVRANQVRALILTPTRELAAQVQECVFTYSRHLPLSSAVVFGGVKINPQMLRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +N+  +  + +E+LV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILELLPKNRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ +++  + +P  I V+  +STA+T+E C     A   KK  +L +L+
Sbjct: 181 NLLFSATFSDEIRALAKGLVNDPVEISVSPANSTAKTVEQCVYP--ADVKKKAPMLVKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +  +  ++F   K+    L   L ++G    AIHGN  Q +R   L+ FK G ++++
Sbjct: 239 KDGN-WQQVLVFTRTKRGANKLAAFLNEEGIKAAAIHGNKSQGARTTALAEFKSGELRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++PN AE+Y+HRIGRTGRAG  G+A +LV   +   +  
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPNIAEDYVHRIGRTGRAGEAGRAISLVCAVEAPDLFG 357

Query: 360 IEKLIEK 366
           IE+LI++
Sbjct: 358 IERLIQQ 364


>gi|294678037|ref|YP_003578652.1| ATP-dependent RNA helicase RhlE [Rhodobacter capsulatus SB 1003]
 gi|294476857|gb|ADE86245.1| ATP-dependent RNA helicase RhlE [Rhodobacter capsulatus SB 1003]
          Length = 448

 Score =  319 bits (818), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 164/374 (43%), Positives = 235/374 (62%), Gaps = 5/374 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +LGL+P ++  +   G  KPTPIQ + IP +++  D+ G+AQTGTGKTA+F LPMLT 
Sbjct: 4   FENLGLAPMLLKNLAGLGLTKPTPIQAQGIPHIVRGRDILGLAQTGTGKTAAFGLPMLTR 63

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL  G R   +  R L+L PTRELA Q+ DN   Y +   + +  ++GG     Q +KL 
Sbjct: 64  ILAYGKRPAPKTVRALVLAPTRELATQIHDNLAAYAEGAPVRIQRVVGGASLNVQAEKLS 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR++D   R  L+++  + LV+DEAD+MLD+GFI  ++ I  L+P  RQT
Sbjct: 124 KGCDVLIATPGRLIDLIERRALVLSETKYLVLDEADQMLDIGFIHALRRIAKLIPAERQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +++++ ++L +P R+EV TP   AE I+      +    +K ALL + + 
Sbjct: 184 LLFSATMPKLMEELAASYLSDPIRVEVATPGKAAEKIDQGV--HFTTQGEKAALLAEYI- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+   +  ++F   K     L   LEK GFSV AIHGN  Q  R + LS F+   +Q++V
Sbjct: 241 SRHPGELAVVFNRTKHGSDKLTKLLEKWGFSVTAIHGNKSQGQRERALSAFRASEVQVLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V HV+N+D+PN  ENY+HRIGRT RAGR G+A       ++  + AI
Sbjct: 301 ATDVAARGLDIPQVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAVAFCGPLEMSDLRAI 360

Query: 361 EKLIEKKVDWLNGD 374
           E  +  K+  + G+
Sbjct: 361 EAAMGAKIPVIGGE 374


>gi|39936732|ref|NP_949008.1| putative ATP-dependent RNA helicase [Rhodopseudomonas palustris
           CGA009]
 gi|192292558|ref|YP_001993163.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
 gi|39650588|emb|CAE29111.1| putative ATP-dependent RNA helicase [Rhodopseudomonas palustris
           CGA009]
 gi|192286307|gb|ACF02688.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 474

 Score =  319 bits (818), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 183/463 (39%), Positives = 262/463 (56%), Gaps = 18/463 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + GL+  +  A+ +  Y  PTPIQ +TIPL L   DV GIAQTGTGKTASF LP+L  
Sbjct: 11  FQEFGLADPIARALQEENYHTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILHR 70

Query: 63  LEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L + R +   +  R L+L PTREL+ Q+ D+F  YG++ +L+ AL IGG+P   Q + L 
Sbjct: 71  LLQNRIKPASKTCRVLVLSPTRELSGQILDSFNAYGRHVHLSAALAIGGVPMGRQVRSLM 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVL+ TPGR+LD      L +  +E LV+DEADRMLDMGFI  I+ I + +P  RQT
Sbjct: 131 GGVDVLVATPGRLLDLVQGNALKLTQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQT 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  ++  ++E  L++P R+ V   SST E I    +     +S K A L Q+L+
Sbjct: 191 LFFSATMPKDIADLAEQMLRDPARVAVTPVSSTVERINQRVI--QLDHSAKPAALAQILK 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +   ++F   K     +   L + G +  AIHGN  Q  R ++L+ F+ G ++ +V
Sbjct: 249 D-DKVNQALVFTRTKHGADKVVKGLARAGITADAIHGNKSQNYRERVLAAFRTGELRTLV 307

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV NFD+PN  E Y+HRIGRT RAG  G A +L A E++ ++  I
Sbjct: 308 ATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGADGTAISLCAGEEMAYLRDI 367

Query: 361 EKLIE----KKVDWLNGDLSSLNPPLEK-IDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           EKLI+    K+     G  ++  PP  +    A H H+ +N   P +     RR      
Sbjct: 368 EKLIKVSLPKEDRRTPGAHAAPTPPPHRGPRQAPHGHSPRNGDAPTRGKNHRRRGPAAG- 426

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
                P ++S+          ++  +  G +G   AF+  KNR
Sbjct: 427 -----PARQSDASRHEAAPRPQHGGNGEGLQGV--AFLQRKNR 462


>gi|170754379|ref|YP_001780277.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B1 str.
           Okra]
 gi|169119591|gb|ACA43427.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B1 str.
           Okra]
          Length = 425

 Score =  319 bits (818), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 167/371 (45%), Positives = 241/371 (64%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   +  A+ + GY K TPIQ K+IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGIDLVGCAQTGTGKTAAFAVPVL 60

Query: 61  TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L KG+   + PR    L+L PTRELA Q+ D+FE YGK  NL  A++ GG+    Q K
Sbjct: 61  QNLSKGKKVNKNPRPIRALVLAPTRELAIQIGDSFECYGKYINLKSAVIFGGVSQNPQTK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+LI TPGR+LD FN+  + + NIE  V+DEADRMLDMG I  ++ I S +P  
Sbjct: 121 ALREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKV 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  E+ K+ ++ +++P R+EV   SST +TI       + +  +K ALL+ 
Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPASSTVDTITQEVY--HVRKKQKRALLKH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ + ++++ ++F   K+    +   L + G    AIHGN  Q +R + L+NFKEG I+
Sbjct: 239 LLKDK-SIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HVFN+++P+  E Y+HRIGRTGRAG  G A +    E+ K +
Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357

Query: 358 DAIEKLIEKKV 368
            AIEKLI K++
Sbjct: 358 KAIEKLINKEI 368


>gi|300772766|ref|ZP_07082636.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761069|gb|EFK57895.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 435

 Score =  319 bits (818), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 161/381 (42%), Positives = 244/381 (64%), Gaps = 5/381 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL L   ++ A+  +GY  PTPIQ + IP++ QR D+   AQTGTGKTA+F +P+L
Sbjct: 18  LQFKDLKLIAPILKALDASGYQNPTPIQEQAIPIIFQRKDLLACAQTGTGKTAAFAIPIL 77

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L   + +   +  RTL+L PTRELA Q+ +NF+ Y K   +   ++ GG+  + Q   
Sbjct: 78  QMLTYSKEKTAQKRIRTLVLTPTRELAIQIKENFDAYSKELPIRNLVIYGGVGQQPQRDA 137

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+LI TPGR+LD +N+G + +  +E  V+DEADRMLDMGFI  ++ + S++P  R
Sbjct: 138 LRKGIDILIATPGRLLDLYNQGFIDLKQLEYFVLDEADRMLDMGFIHDVKKVISIIPKKR 197

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM  E+QK++ + L++P ++EV   S+TAE I+      +   S K  LL  L
Sbjct: 198 QTLLFSATMPAEIQKLASHILEDPSKVEVTPESTTAEKIQQSVY--FVSKSDKRHLLTHL 255

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+S++ +++ ++F   K     +   L KQG    AIHGN  Q +R   L+NFK+  +++
Sbjct: 256 LKSEN-IEHTLVFSRTKHGADRIAKDLAKQGIQAAAIHGNKSQSARQNALNNFKDRKLRV 314

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI D+ +V NFD+PN  E+Y+HRIGRTGRAG+ GKA +    E+  ++ 
Sbjct: 315 LVATDIAARGIDIDDLSYVINFDLPNIPESYVHRIGRTGRAGKDGKAISFCDDEEYAYLL 374

Query: 359 AIEKLIEKKVDWLNGDLSSLN 379
            IEK I  ++  +     SL+
Sbjct: 375 DIEKSIRMEIPRVEDQPYSLH 395


>gi|221199585|ref|ZP_03572629.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
 gi|221205515|ref|ZP_03578530.1| dead/deah box helicase [Burkholderia multivorans CGD2]
 gi|221174353|gb|EEE06785.1| dead/deah box helicase [Burkholderia multivorans CGD2]
 gi|221180870|gb|EEE13273.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
          Length = 487

 Score =  319 bits (818), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 171/373 (45%), Positives = 236/373 (63%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+  ++ A+ + GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q  
Sbjct: 73  LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +    V   A+  K+ A++ Q
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKQAAVV-Q 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +  +K  I+FCN K     L   LE+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 LLRDRG-LKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKKVDW 370
             IEKLI++ ++ 
Sbjct: 370 ADIEKLIKRPLEM 382


>gi|94309401|ref|YP_582611.1| DEAD/DEAH box helicase-like protein [Cupriavidus metallidurans
           CH34]
 gi|93353253|gb|ABF07342.1| RNA helicase [Cupriavidus metallidurans CH34]
          Length = 540

 Score =  319 bits (818), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 166/381 (43%), Positives = 241/381 (63%), Gaps = 13/381 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY  PTPIQ + IP +L+  D+   AQTGTGKTA F LPML
Sbjct: 1   MSFSELGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRARVR---MPR-------TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
            +L +  AR      PR        L+L PTRELAAQV ++   YGK   L   ++ GG+
Sbjct: 61  QLLSETAARANGGNAPRGARPNVRALVLTPTRELAAQVEESVRNYGKYLKLRSMVMFGGV 120

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q + L RG D+++ TPGR+LDH  +  + ++++E+LV+DEADRMLDMGFI  I+ +
Sbjct: 121 GINPQIEALRRGVDIVVATPGRLLDHVAQRTIDLSHVELLVLDEADRMLDMGFIHDIRKV 180

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +++P  RQ LLFSAT +D+++ +++  L NP  IEV   ++TAET+            +
Sbjct: 181 LNVLPPKRQNLLFSATFSDDIRALADRLLDNPASIEVARRNTTAETVAQRVFPV--DRER 238

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K  LL  L++  D  +  ++F   K     L   L K G S  AIHGN  Q +R + L+ 
Sbjct: 239 KRELLAHLVRQHDWHQV-LVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALTE 297

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK GT++L+VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV 
Sbjct: 298 FKAGTLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVC 357

Query: 351 KEDIKHIDAIEKLIEKKVDWL 371
            ++   +  IE+LI+++++ +
Sbjct: 358 VDEHGLLRDIERLIKRQIEQV 378


>gi|221211662|ref|ZP_03584641.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
 gi|221169023|gb|EEE01491.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
          Length = 495

 Score =  319 bits (818), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 171/373 (45%), Positives = 236/373 (63%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+  ++ A+ + GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q  
Sbjct: 73  LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +    V   A+  K+ A++ Q
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKQAAVV-Q 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +  +K  I+FCN K     L   LE+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 LLRDRG-LKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKKVDW 370
             IEKLI++ ++ 
Sbjct: 370 ADIEKLIKRPLEM 382


>gi|148657801|ref|YP_001278006.1| DEAD/DEAH box helicase domain-containing protein [Roseiflexus sp.
           RS-1]
 gi|148569911|gb|ABQ92056.1| DEAD/DEAH box helicase domain protein [Roseiflexus sp. RS-1]
          Length = 467

 Score =  319 bits (818), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 170/446 (38%), Positives = 259/446 (58%), Gaps = 15/446 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F      P++   + D GY  PTPIQ + IP  L   DV GIAQTGTGKTA+FVLP+L
Sbjct: 1   MSFDSFRFHPQITAGIRDLGYHTPTPIQEQVIPHALDGRDVIGIAQTGTGKTAAFVLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G R RVR    +I+ PTRELA Q+    E  GK   L    L GG+ ++ Q ++L
Sbjct: 61  QRLMRGPRGRVR---AMIVTPTRELAEQIQGVIEALGKYTGLRSVTLYGGVGYQGQIQRL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG ++ +  PGR+LDH  RG L + ++++L++DEAD+M DMGF+P ++ I  L P  RQ
Sbjct: 118 RRGVEIAVVCPGRLLDHLERGTLTLEHLDMLILDEADQMFDMGFLPDVRRILRLAPAQRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM D ++ ++   L+ P+ I++   S+   T+ H           K ALL +LL
Sbjct: 178 TMLFSATMPDAIRALAREALREPQTIQIGR-SAPVSTVTHAIYPVAEHL--KTALLIELL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  DT  + +IF   K    +L  +L + G+   A+ GN+ Q  R   L  F+ G  Q++
Sbjct: 235 RHTDT-GSVLIFTRTKHRAQHLSDTLARMGYRATALQGNMSQNRRQAALDGFRSGRYQIL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HV N+D+P  AE Y HRIGRTGRA R G AFTLV + D   + A
Sbjct: 294 VATDIAARGIDVAHISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRSDTGMVRA 353

Query: 360 IEKLIEK--KVDWLNG-DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           IE+LI +  K + + G D  +  P  +    A+ +HA +++ +P+      + +++  + 
Sbjct: 354 IERLIGEPLKRETVPGFDYHAAAPAHD----ARSDHAPRHHAMPRHYEPHSQDERDNRAP 409

Query: 417 KSHIPLKESEKISKLQQDIQENDADS 442
           + H   +     +  ++D+QE  +D+
Sbjct: 410 RRHDAQERRSDTAPRRRDVQEWRSDA 435


>gi|189351106|ref|YP_001946734.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
 gi|189335128|dbj|BAG44198.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
          Length = 487

 Score =  319 bits (817), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 171/372 (45%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+  ++ A+ + GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+  L  A++ GG+    Q  
Sbjct: 73  LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +    V   A+  K+ A++ Q
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKQAAVV-Q 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +  +K  I+FCN K     L   LE+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 LLRDRG-LKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKKVD 369
             IEKLI++ ++
Sbjct: 370 ADIEKLIKRPLE 381


>gi|114777228|ref|ZP_01452239.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal
           [Mariprofundus ferrooxydans PV-1]
 gi|114552373|gb|EAU54856.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal
           [Mariprofundus ferrooxydans PV-1]
          Length = 426

 Score =  319 bits (817), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 164/371 (44%), Positives = 235/371 (63%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV D GY  PTP+Q  +IP++L  HDV   AQTGTGKTA F LPML
Sbjct: 1   MSFEKLGLSADLLRAVADQGYETPTPVQANSIPVILAGHDVLAGAQTGTGKTAGFTLPML 60

Query: 61  TILEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            ++ K    R+R    R L+L PTRELAAQV ++   YGK   L   ++ GG+    Q +
Sbjct: 61  QLMHKTHPERSRNHPIRALVLTPTRELAAQVGESIATYGKYLPLRSTVVFGGVGINPQIQ 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+RG D+L+ TPGR+LD   +GK  + ++E  V+DEADRMLDMGFI  I+ +  ++P  
Sbjct: 121 KLQRGVDILVATPGRLLDLIGQGKANLGHVEFFVLDEADRMLDMGFIHDIRKVLKMLPKK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT ++E++K++  FL  P  +EV    +  +  +   V      +KK  LL  
Sbjct: 181 RQNLLFSATFSEEIKKLANGFLHAPVYVEVARNETAHQVTQ---VVHPVSKAKKRDLLSH 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++  D  +  ++F   K     L   LE  G +  AIHGN  Q +R K L+ FK G+++
Sbjct: 238 LIRQGD-WQQVLVFTKTKHGANKLTTQLESDGITAVAIHGNKSQTARTKALAGFKAGSVR 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MVA+D+AARGLDI  + HV N+++P+ AE+Y+HRIGRTGRAG  G++ +LV+ ++ K +
Sbjct: 297 VMVATDIAARGLDIDSLPHVVNYELPHVAEDYVHRIGRTGRAGNSGESLSLVSGDEKKLL 356

Query: 358 DAIEKLIEKKV 368
             IE+LI+K +
Sbjct: 357 VGIERLIKKPI 367


>gi|332529740|ref|ZP_08405694.1| DEAD/DEAH box helicase-like protein [Hylemonella gracilis ATCC
           19624]
 gi|332040761|gb|EGI77133.1| DEAD/DEAH box helicase-like protein [Hylemonella gracilis ATCC
           19624]
          Length = 506

 Score =  319 bits (817), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 170/370 (45%), Positives = 239/370 (64%), Gaps = 8/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +ADL L+  +  AV D GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L  
Sbjct: 20  YADLTLAEPLKRAVADMGYETMTPIQAQAIPVVLAGQDVMGAAQTGTGKTAAFSLPLLQR 79

Query: 63  LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L K      +  R P R L+L PTRELA QVA   + Y K  +L  A++ GG+  + Q  
Sbjct: 80  LLKHENASTSPARHPVRALVLLPTRELADQVAQQVKMYAKYTHLRSAVVFGGMDMKPQTL 139

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P  
Sbjct: 140 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSHLPKQ 199

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R TLLFSAT + E+++++ ++LQNP  IEV   ++TA T+E  F +   +  K+ A L+Q
Sbjct: 200 RTTLLFSATFSPEIKRLASSYLQNPITIEVARSNATATTVEQHFYSV-GEDDKRHA-LRQ 257

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+ ++ +K   +F N K     L  +LE+ G    A+HG+  Q  R+K L  FK+G + 
Sbjct: 258 VLRDKN-LKQAFVFVNSKLGCARLARALERDGLKTAALHGDKSQDERLKALDAFKKGEVD 316

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+V +D+AARGLDI DV  VFN D+P  AE+Y+HRIGRTGRAG  G A + V+  D+K +
Sbjct: 317 LLVCTDVAARGLDIKDVPAVFNIDIPFNAEDYVHRIGRTGRAGALGVAVSFVSPRDVKSV 376

Query: 358 DAIEKLIEKK 367
             IEKLI+ K
Sbjct: 377 AEIEKLIKTK 386


>gi|149926712|ref|ZP_01914972.1| Helicase [Limnobacter sp. MED105]
 gi|149824641|gb|EDM83857.1| Helicase [Limnobacter sp. MED105]
          Length = 539

 Score =  319 bits (817), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 174/389 (44%), Positives = 240/389 (61%), Gaps = 9/389 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  L P +  A+   GY +PTPIQ K IP+V+   DV G AQTGTGKTA F LP+L  
Sbjct: 22  FADFALHPDIQKAIDAQGYTQPTPIQAKAIPVVMTGVDVMGAAQTGTGKTAGFSLPILNR 81

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     +  +  R P R LIL PTRELA QVA N   Y K   L   ++ GG+    Q +
Sbjct: 82  LMPLATENTSPARHPVRALILTPTRELADQVAANVHTYAKFTPLRSTVVYGGVDINPQIQ 141

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG +++I TPGR+LDH  +  + +  +++LV+DEADRMLDMGF+P +Q I +L+P T
Sbjct: 142 TLRRGVELVIATPGRLLDHVQQKSINLGQVQVLVLDEADRMLDMGFLPDLQRIINLLPKT 201

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT + E+QK++++F+ +P  IEV   ++T+E I+    A  ++  K+ A+   
Sbjct: 202 RQNLLFSATFSPEIQKLAKSFMVSPTLIEVARRNATSENIKQVIFALDSEEDKRMAVC-H 260

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+QS+  +   I+F N K     L   LEK+G S  AIHG+  Q  R K L  FK G + 
Sbjct: 261 LIQSK-ALSQVIVFSNTKLGTARLARHLEKEGVSSTAIHGDKTQIERTKSLEAFKAGEVT 319

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI D+  V N+D+P   E+Y+HRIGRTGRAG  G A++ V K D + +
Sbjct: 320 VLVATDVAARGLDIADLPCVINYDLPTTPEDYVHRIGRTGRAGAKGTAYSFVVKRDERAL 379

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLEK 384
             IEKLI K    + L G +     P E+
Sbjct: 380 KDIEKLIGKAFVREELEGFVPGARAPREE 408


>gi|73540602|ref|YP_295122.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72118015|gb|AAZ60278.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 537

 Score =  319 bits (817), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 171/389 (43%), Positives = 238/389 (61%), Gaps = 10/389 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F   GL  +++ A+ + GY KPTPIQ + IP+VL   DV G AQTGTGKTA F LP    
Sbjct: 56  FESFGLDARILRALSEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQR 115

Query: 59  MLTILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +L +     +  R P R L+L PTRELA QV DN  +Y K+ +L   ++ GG+    Q  
Sbjct: 116 LLPMASASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTD 175

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG ++L+ TPGR+LDH  +  + ++ +++LV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 176 ALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAQ 235

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E+++++ ++L+ P  IEV   +ST E +    V       K+ A++  
Sbjct: 236 RQTLLFSATFSPEIKRLAASYLKQPVTIEVARSNSTNENVRQ-MVYQVEDGQKQAAVVHL 294

Query: 238 LLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L Q   Q   K  I+F N K     L   LE++G +  AIHG+  Q  RM+ L  FK GT
Sbjct: 295 LRQRAEQGLSKQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEGFKNGT 354

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I  +VA+D+AARGLDI D+  V NFD+P  AE+Y+HRIGRTGRAG  G A ++    D +
Sbjct: 355 IDALVATDVAARGLDIADMPCVINFDLPFSAEDYVHRIGRTGRAGASGDALSIFVPGDER 414

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
            +  IEKLI++ V    G L   +P  EK
Sbjct: 415 LLTDIEKLIKRSVP--RGTLEGFDPTGEK 441


>gi|260776311|ref|ZP_05885206.1| ATP-dependent RNA helicase RhlE [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607534|gb|EEX33799.1| ATP-dependent RNA helicase RhlE [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 483

 Score =  319 bits (817), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 166/367 (45%), Positives = 234/367 (63%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ D GY KP+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTALGLSAPLLKAIDDQGYDKPSPIQEQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L+ G R +    R L+L PTRELAAQV +N  KY +   LT  ++ GG+    Q  KL
Sbjct: 61  ERLDNGTRVKGNHVRALVLTPTRELAAQVQENVFKYSRYQRLTSNVVFGGVKINPQMTKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DVL+ TPGR+LD + +  +  + +E+LV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGTDVLVATPGRLLDLYQQNAINFSQLEVLVLDEADRMLDMGFIRDIRKILALLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + +P  + VN  +STA TIE       A   KK  +L +L+
Sbjct: 181 NLLFSATFSAEIRELAKGLVNDPVEVSVNPENSTAVTIEQSIYP--ADKRKKAPMLVKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  +  ++F   K     L H L  QG +   IHGN  Q +R K L++FK G ++++
Sbjct: 239 KDGD-WRQVLVFSRTKHGANRLSHYLNDQGITAAPIHGNKSQGARTKALADFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P+ AE+Y+HRIGRTGRAG  GKA +LV   +   +  
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPHVAEDYVHRIGRTGRAGEVGKAISLVEAAEASELFG 357

Query: 360 IEKLIEK 366
           IE+LI++
Sbjct: 358 IERLIQQ 364


>gi|172061278|ref|YP_001808930.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171993795|gb|ACB64714.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 511

 Score =  319 bits (817), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 170/372 (45%), Positives = 237/372 (63%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+  ++ A+ + GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 35  FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 94

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+ +L  A++ GG+    Q  
Sbjct: 95  LLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMA 154

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 155 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 214

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +    V   A+  K  A++ Q
Sbjct: 215 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKHGAVV-Q 272

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +  +K  ++FCN K     L  +LE+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 273 LLRDRG-LKQVLVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEIE 331

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 332 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 391

Query: 358 DAIEKLIEKKVD 369
             IEKLI++ ++
Sbjct: 392 ADIEKLIKRPLE 403


>gi|260768003|ref|ZP_05876937.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii CIP 102972]
 gi|260616033|gb|EEX41218.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii CIP 102972]
          Length = 540

 Score =  319 bits (817), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 163/367 (44%), Positives = 235/367 (64%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ + IP VLQ  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILQAIKEKGYETPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G R R    R LIL PTRELAAQV +    Y ++  L+ A++ GG+    Q  +L
Sbjct: 61  ERLTGGPRVRANQVRALILTPTRELAAQVQECVFTYSRHLPLSSAVVFGGVKINPQMLRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +N+  +  + +E+LV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILELLPKNRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ +++  + +P  I V+  +STA+T+E C     A   KK  +L +L+
Sbjct: 181 NLLFSATFSDEIRALAKGLVNDPVEISVSPANSTAKTVEQCVYP--ADVKKKAPMLVKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +  +  ++F   K+    L   L ++G    AIHGN  Q +R   L+ FK G ++++
Sbjct: 239 KDGN-WQQVLVFTRTKRGANKLAAFLNEEGIKAAAIHGNKSQGARTTALAEFKSGELRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++PN AE+Y+HRIGRTGRAG  G+A +LV   +   +  
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPNIAEDYVHRIGRTGRAGEAGRAISLVCAVEAPDLFG 357

Query: 360 IEKLIEK 366
           IE+LI++
Sbjct: 358 IERLIQQ 364


>gi|170701603|ref|ZP_02892549.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170133486|gb|EDT01868.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 571

 Score =  319 bits (817), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 171/372 (45%), Positives = 237/372 (63%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+  ++ A+ + GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 87  FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 146

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+ +L  A++ GG+    Q  
Sbjct: 147 LLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMA 206

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 207 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 266

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +    V   A+  K  A++ Q
Sbjct: 267 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKHSAVV-Q 324

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +  +K  I+FCN K     L  +LE+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 325 LLRDRG-LKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEIE 383

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 384 ALVATDVAARGLDIVELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 443

Query: 358 DAIEKLIEKKVD 369
             IEKLI++ ++
Sbjct: 444 ADIEKLIKRPLE 455


>gi|95928808|ref|ZP_01311554.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
 gi|95135153|gb|EAT16806.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
          Length = 426

 Score =  318 bits (816), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 170/402 (42%), Positives = 253/402 (62%), Gaps = 14/402 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F DLGLS +++ AV D GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+L  
Sbjct: 4   FNDLGLSAELLRAVADQGYSEPTPIQAQAIPAVLNGGDILAAAQTGTGKTAGFTLPVLQR 63

Query: 61  ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              T +  GR   R  R L+L PTRELAAQV  +   YGK   L  A++ GG+    Q  
Sbjct: 64  LSDTPVSSGR---RPVRALVLTPTRELAAQVGASVADYGKYLPLRSAIVFGGVKINPQIS 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +G D+L+ TPGR+LDH ++  + ++ +EIL++DEADRMLDMGFI  I+ + +L+P  
Sbjct: 121 MLRKGVDILVATPGRLLDHVSQKTVDLSKVEILILDEADRMLDMGFIRDIRKVLALLPKK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D++++++++ L  P  IEV   ++ +E +E        + S+K  LL  
Sbjct: 181 RQNLLFSATFSDDIKRLADSLLNTPTLIEVARRNTASEQVEQSV--HLIEKSRKRELLSH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++ SQ+  +  ++F   K+    L   LEK G    AIHGN  Q +R K L++FK G  +
Sbjct: 239 MIGSQN-WQQVLVFTRTKRGANRLAQQLEKDGLKSTAIHGNKTQGARTKALADFKAGRAR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + +V N+++P+  E+Y+HRIGRTGRAGR GKA +LV  E+ K +
Sbjct: 298 VLVATDIAARGLDIDQLPNVVNYELPDVPEDYVHRIGRTGRAGRDGKAVSLVCSEEKKQL 357

Query: 358 DAIEKLIEKKV--DWLNG-DLSSLNPPLEKIDIAQHNHARKN 396
             IE+L+++ +  + + G ++S+ N P  +        A++N
Sbjct: 358 RDIERLLKRPIAKEVIAGYEVSTTNKPTARPASQPRKSAQRN 399


>gi|332521345|ref|ZP_08397801.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332043073|gb|EGI79271.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 444

 Score =  318 bits (816), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 183/416 (43%), Positives = 255/416 (61%), Gaps = 10/416 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+   GY  P+PIQ K IP VL  +DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFKQLGLSEPLLKAISKKGYENPSPIQAKAIPPVLDGYDVLASAQTGTGKTAGFTLPLL 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            IL E  + + R  R L+L PTRELAAQV  N ++Y +  NL   ++ GG+  + Q   +
Sbjct: 61  HILSENPKEKFRPIRALVLTPTRELAAQVYANVKEYSEFLNLRSVVIFGGVNQKPQVANI 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DVL+ TPGR++D  N+G L +  +EI V+DEADRMLDMGF+  I+ +  L+P  RQ
Sbjct: 121 RKGVDVLVATPGRLIDLNNQGLLSLKRVEIFVLDEADRMLDMGFLRDIERVMKLMPDKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQL 238
            L+FSAT + +++K++ N L+NP ++E  TP +TA  +E      Y      K  L+ +L
Sbjct: 181 NLMFSATFSKDIKKLAFNILKNPVQVEA-TPENTA--VEAISQKVYRVAKGLKTGLVIKL 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S    K  ++F   K     L   +   G +  AIHGN  Q +R K L  FK+GTI++
Sbjct: 238 I-SDGNWKQVLVFTRTKHGANKLTKKMISSGITAAAIHGNKSQGARTKALKGFKDGTIRV 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDIP + HV NF++PN +E+Y+HRIGRTGRAG  G+A +LV+ ++ +++ 
Sbjct: 297 MVATDIAARGLDIPLLPHVINFEIPNISEDYVHRIGRTGRAGAKGEAISLVSADETQYLR 356

Query: 359 AIEKLI-EK-KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            IEKLI EK KV+ L G     N     I   Q+   R  NP   KS G +  K+N
Sbjct: 357 DIEKLIGEKLKVEILEGFEPDPNASTAPIKPGQNRQKR--NPNKAKSQGSNSGKRN 410


>gi|115352406|ref|YP_774245.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115282394|gb|ABI87911.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
          Length = 497

 Score =  318 bits (816), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 170/372 (45%), Positives = 237/372 (63%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+  ++ A+ + GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 13  FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+ +L  A++ GG+    Q  
Sbjct: 73  LLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMA 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +    V   A+  K  A++ Q
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKHGAVV-Q 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +  +K  ++FCN K     L  +LE+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 251 LLRDRG-LKQVLVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEIE 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 369

Query: 358 DAIEKLIEKKVD 369
             IEKLI++ ++
Sbjct: 370 ADIEKLIKRPLE 381


>gi|171318169|ref|ZP_02907335.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
 gi|171096637|gb|EDT41526.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
          Length = 571

 Score =  318 bits (816), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 171/372 (45%), Positives = 237/372 (63%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+  ++ A+ + GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++  
Sbjct: 87  FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 146

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N   Y K+ +L  A++ GG+    Q  
Sbjct: 147 LLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMA 206

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 207 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 266

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +    V   A+  K  A++ Q
Sbjct: 267 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKHSAVV-Q 324

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +  +K  I+FCN K     L  +LE+ G    AIHG+  Q  RM+ L  FK G I+
Sbjct: 325 LLRDRG-LKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEIE 383

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +
Sbjct: 384 ALVATDVAARGLDIVELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 443

Query: 358 DAIEKLIEKKVD 369
             IEKLI++ ++
Sbjct: 444 ADIEKLIKRPLE 455


>gi|134095351|ref|YP_001100426.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
 gi|133739254|emb|CAL62303.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
          Length = 449

 Score =  318 bits (816), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 169/374 (45%), Positives = 237/374 (63%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFTDLGLADGIVRAVTEHGYSIPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILEK-----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L         A  + P R L+L PTRELAAQV ++   Y K  NL  A++ GG+    
Sbjct: 61  HRLATSGTPHASASAQRPIRALVLTPTRELAAQVEESVRTYSKYLNLNSAVIFGGVGINP 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q K L+ G D+L+ TPGR+LDH  +G + ++ +EILV+DEADRMLDMGFI  I+ + +++
Sbjct: 121 QIKLLKHGVDILVATPGRLLDHMQQGTVNLSKVEILVLDEADRMLDMGFIKDIRRVLAVL 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT ++E++ +++  L +P  IEV   +ST E IE           KK  +
Sbjct: 181 PKNRQNLLFSATFSNEIKALADGLLNSPAMIEVARRNSTVEVIEQKI--HPVDRDKKHPM 238

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L+++ +     ++F   K     L   LEK G S  AIHGN  Q +R + LS FK+G
Sbjct: 239 LAHLIKTNN-WSQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTRALSEFKDG 297

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           ++Q++VA+D+AARG+DI  + HV N+D+PN  E+Y+HRIGRTGRAG  G+A +LV  +++
Sbjct: 298 SLQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEL 357

Query: 355 KHIDAIEKLIEKKV 368
             +  IEKLI++K+
Sbjct: 358 DMLKDIEKLIKRKL 371


>gi|90022842|ref|YP_528669.1| dystroglycan-type cadherin-like protein [Saccharophagus degradans
           2-40]
 gi|89952442|gb|ABD82457.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 516

 Score =  318 bits (816), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 162/370 (43%), Positives = 234/370 (63%), Gaps = 8/370 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+LGL P +  AVL+ GY  PTPIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 18  MKFAELGLCPAIQKAVLEQGYETPTPIQAQAIPPVLEGRDVMAAAQTGTGKTAGFTLPIL 77

Query: 61  TILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            IL +G     + +    R L+L PTRELAAQV +N   YGK   +   ++ GG+    Q
Sbjct: 78  EILAEGIENGRKVKPNQARALVLTPTRELAAQVGENVALYGKYLPIKSTIVFGGVKINPQ 137

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL  G D+L+ TPGR++D +N+  +  + +E+LV+DEADRMLDMGFI  I+ I +++P
Sbjct: 138 MMKLRGGVDILVATPGRLMDLYNQRAVKFDQLEMLVLDEADRMLDMGFIHDIRKIMAILP 197

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ L+FSAT + ++++++++ + NP  I VN P+STA  ++           +K ALL
Sbjct: 198 KKRQNLMFSATFSQDIRELAKSIVNNPVEITVNPPNSTATRVKQWICPV--DKKEKPALL 255

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+++ +  +  ++F   K     L   LE  G    AIHGN  Q +R K L+ FK GT
Sbjct: 256 THLIKT-NKWQQVLVFSRTKHGANKLVKQLEGSGLRAAAIHGNKSQGARTKALAEFKNGT 314

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGLDI  +  V NFD+P  AE+Y+HRIGRTGRAG  G A +LV+ ++ +
Sbjct: 315 VKILVATDIAARGLDIDQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGNAVSLVSADEFQ 374

Query: 356 HIDAIEKLIE 365
            +  IE+L +
Sbjct: 375 MLKEIERLTK 384


>gi|149189294|ref|ZP_01867580.1| DNA and RNA helicase [Vibrio shilonii AK1]
 gi|148836853|gb|EDL53804.1| DNA and RNA helicase [Vibrio shilonii AK1]
          Length = 477

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 170/391 (43%), Positives = 240/391 (61%), Gaps = 10/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ D GY K +PIQ + IP +++  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFESLGLSTPILRAIQDLGYEKASPIQEQAIPAIIEGKDVMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G R +    R LIL PTRELAAQV ++  KY  N  LT   + GG+    Q  KL
Sbjct: 61  ERLNSGQRVKGNHIRALILTPTRELAAQVHESVFKYSTNLPLTSQCVFGGVKINPQMLKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DV++ TPGR+LD + +  +  + +E+LV+DEADRMLDMGF   I+ I  L+P  RQ
Sbjct: 121 RKGCDVMVATPGRLLDLYQQNAIKFSQLEVLVLDEADRMLDMGFFRDIKKILDLLPKNRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT ++E++ +++  + NP  + V  P+ST + +E     T     +K A+L +L+
Sbjct: 181 NLLFSATFSNEIRDLAKGLVNNPIEVSVTPPNSTTKLVEQSLYVT--DKKQKPAMLAKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               + K  ++FC  K     L   LE +  +  AIHGN  Q +R K L +FK G I+++
Sbjct: 239 -DDGSWKQVLVFCKTKHGANRLARFLEGKKITALAIHGNKSQGARTKALEHFKTGQIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V NFD+P+ +E+Y+HRIGRTGRAG  GKA++LV  ++ K +  
Sbjct: 298 VATDIAARGLDIPQLPQVVNFDLPHVSEDYVHRIGRTGRAGETGKAYSLVCADEAKELFG 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386
           IE+LI K +D    +L    P    P  K+D
Sbjct: 358 IERLIGKLIDRF--ELEGFKPVNAVPESKLD 386


>gi|91216282|ref|ZP_01253249.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
 gi|91185420|gb|EAS71796.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
          Length = 423

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 182/424 (42%), Positives = 252/424 (59%), Gaps = 6/424 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AV   GY  PTPIQ K+IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MLFKSLGLSEALVKAVSSQGYDTPTPIQEKSIPAVLEGKDVLASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +    R R  R LIL PTRELAAQV  + + YGK  +L   ++ GG+  ++Q   L
Sbjct: 61  QLLSQTPPLRNRPVRALILTPTRELAAQVHQSVKDYGKFVDLRSTVIFGGVNQKSQVSTL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D  N+G L +  +EILV+DEADRMLDMGF+  I+ I  L+P  RQ
Sbjct: 121 RNGVDVLVATPGRLIDLNNQGLLSLAKVEILVLDEADRMLDMGFLRDIKKIMKLIPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT + E++ ++  FL+NP  +E    ++T E IE        +  KK  LL +L+
Sbjct: 181 TLLFSATFSREIRSLASEFLKNPVSVESTPENTTVEAIEQQVYRVAKE--KKTDLLIKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+   +  ++F   K     L   LE       AIHGN  Q +R K L+ FK G+++++
Sbjct: 239 -SEGNWEQVLVFSRTKHGANKLAKKLEAAKIGAAAIHGNKSQGARTKALAGFKSGSVKVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDIP + +V NF++PN +E+Y+HRIGRTGRAG  G A +LV+ ++   +  
Sbjct: 298 VATDIASRGLDIPLLPYVVNFELPNVSEDYVHRIGRTGRAGASGLAVSLVSADETVFLKD 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IEKLI  K+  D + G     N   +  +  Q     ++N    +S    R K   S Q 
Sbjct: 358 IEKLIGDKIPMDIIEGFEPDPNASTKPFNPQQRGRKPQSNSRSGQSNRPQREKSGSSRQS 417

Query: 418 SHIP 421
           S+ P
Sbjct: 418 SNKP 421


>gi|187777742|ref|ZP_02994215.1| hypothetical protein CLOSPO_01334 [Clostridium sporogenes ATCC
           15579]
 gi|187774670|gb|EDU38472.1| hypothetical protein CLOSPO_01334 [Clostridium sporogenes ATCC
           15579]
          Length = 425

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 166/371 (44%), Positives = 242/371 (65%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   +  A+ + GY K TPIQ K+IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVL 60

Query: 61  TILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L K +   + PRT   L+L PTRELA Q+ ++FE YGK  NL  A++ GG+    Q K
Sbjct: 61  QNLSKDKKVNKNPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+LI TPGR+LD FN+  + + NIE  V+DEADRMLDMG I  ++ I S +P  
Sbjct: 121 ALREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKV 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  E+ K+ ++ +++P R+EV   SST +TI       + +  +K +LL+ 
Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVY--HVRKKQKRSLLKH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ + ++++ ++F   K+    +   L + G    AIHGN  Q +R + L+NFKEG I+
Sbjct: 239 LLKDE-SIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HVFN+++P+  E Y+HRIGRTGRAG  G A +    E+IK +
Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEEIKSL 357

Query: 358 DAIEKLIEKKV 368
            AIEKLI K++
Sbjct: 358 KAIEKLIHKEI 368


>gi|94311518|ref|YP_584728.1| DEAD/DEAH box helicase-like protein [Cupriavidus metallidurans
           CH34]
 gi|93355370|gb|ABF09459.1| RNA helicase [Cupriavidus metallidurans CH34]
          Length = 556

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 171/391 (43%), Positives = 241/391 (61%), Gaps = 13/391 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F   GL P+++ A+ + GY KPTPIQ + IP+VL   DV G AQTGTGKTA F LP    
Sbjct: 75  FESFGLDPRILRALTEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQR 134

Query: 59  MLTILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +L +     +  R P R L+L PTRELA QV DN  +Y K+ +L   ++ GG+    Q  
Sbjct: 135 LLPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTD 194

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG ++L+ TPGR+LDH  +  + ++ +++LV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 195 ALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAQ 254

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++ ++L+ P  IEV   +ST E +    V    Q   K A +  
Sbjct: 255 RQTLLFSATFSPEIKKLASSYLKQPVTIEVARSNSTNENVRQ--VVYQVQDGHKQAAVVH 312

Query: 238 LLQ---SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LL+   ++   +  I+F N K     L   LE++G +  AIHG+  Q  RM+ L  FK G
Sbjct: 313 LLKQRANEQQSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLDGFKNG 372

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL-VAKED 353
           TI  +VA+D+AARGLDIP +  V NFD+P  AE+Y+HRIGRTGRAG  G A ++ V   D
Sbjct: 373 TIDALVATDVAARGLDIPAMPCVINFDLPFSAEDYVHRIGRTGRAGASGDALSIFVPGND 432

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
            + +  IEKLI++ +    G L   +P  E+
Sbjct: 433 DRLLADIEKLIKRSIP--RGSLDGFDPTGER 461


>gi|297568967|ref|YP_003690311.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924882|gb|ADH85692.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 442

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 167/396 (42%), Positives = 248/396 (62%), Gaps = 5/396 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL  +++ AV ++GY +P+PIQ K IP+VLQ  D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFNELGLRAELLRAVSESGYSQPSPIQSKAIPVVLQGGDLLAGAQTGTGKTAGFALPLL 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L EK   + R  R L+L PTRELAAQV  +F  YGK+  L   ++ GG+    Q   L
Sbjct: 61  QRLSEKPAQKSRPIRALVLTPTRELAAQVEASFRLYGKHLPLRTTVVFGGVSIRPQITTL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LDH ++  + ++ +E+LV+DEADRMLDMGF+  I+ I +L+P  RQ
Sbjct: 121 RQGVDILVATPGRLLDHVSQKTIDLSKVEMLVLDEADRMLDMGFLRDIRKILALLPIQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++++++  L++P  IEV   ++ AE ++            K ALL  L+
Sbjct: 181 NLLFSATFSDEIKRLADGLLKSPTLIEVARRNTAAEQVDQAIY--RIDKGLKRALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  +  ++F   K     L   L K G S  AIHGN  Q +R + L++FK+G ++++
Sbjct: 239 SGQN-WQQVLVFTRTKHGANRLAGQLAKDGISSTAIHGNKSQGARTRALADFKQGKVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRAG  G A + V  E+ K +  
Sbjct: 298 VATDIAARGLDIEQLPHVVNYELPNVPEDYVHRIGRTGRAGCSGNAISFVCAEEHKQLHD 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           IE L+++++  L      L     ++D  +H   R+
Sbjct: 358 IESLLKRRIP-LQEQEPGLTLTRSEVDTVRHRTPRR 392


>gi|254480404|ref|ZP_05093651.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214038987|gb|EEB79647.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 429

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 165/374 (44%), Positives = 241/374 (64%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGLS +++ AV   GY + TPIQ + IPLVL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MLFKDLGLSAELLRAVETQGYDEATPIQQQAIPLVLKGKDVLAGAQTGTGKTAGFTLPVL 60

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L+   A  + R PR L+L PTRELAAQV ++   YG+      A++ GG+    Q +K
Sbjct: 61  QRLQSSHAEGQKRHPRVLVLTPTRELAAQVHESVRDYGRFLPFRSAVIFGGVSINPQKQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DV++ TPGR+LDH  +  + ++ +E+LV+DEADRMLDMGFI  I+ + + +P  R
Sbjct: 121 LIKGVDVVVATPGRLLDHLQQRSIDLSKVEVLVLDEADRMLDMGFIRDIRKVLNAIPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT + E++ ++  FL  P  I+V TP +TA  +    V    +  K+  L Q++
Sbjct: 181 QTLLFSATFSKEIKSLAAEFLHQPTEIQV-TPQNTAAELVSQIVYPVDKKRKRELLSQKI 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  +  ++F   K     L   L K G +  AIHGN  Q +R K L+NFK+G++++
Sbjct: 240 --GEENWQQVLVFTRTKHGANKLSEQLGKDGITSAAIHGNKSQGARTKALANFKQGSVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV NF++PN AE+Y+HRIGRT RAG+ G A +LV  +++K + 
Sbjct: 298 LVATDIAARGIDIDKLPHVVNFELPNVAEDYVHRIGRTARAGQEGHAVSLVCVDELKLLS 357

Query: 359 AIEKLIEKKVDWLN 372
            IEKL+   ++ +N
Sbjct: 358 DIEKLLGTSIEKVN 371


>gi|262193653|ref|YP_003264862.1| DEAD/DEAH box helicase [Haliangium ochraceum DSM 14365]
 gi|262077000|gb|ACY12969.1| DEAD/DEAH box helicase domain protein [Haliangium ochraceum DSM
           14365]
          Length = 497

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 169/375 (45%), Positives = 229/375 (61%), Gaps = 9/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AV DAGY   TPIQ + IP  L   D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MPFQQLGLSEPLVRAVHDAGYTNATPIQTQAIPPALDGRDLLGCAQTGTGKTAAFSLPIL 60

Query: 61  TILEK---GRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L +   G AR     R  R LI+ PTRELAAQ+ D+   YG++  L   ++ GG+   
Sbjct: 61  QRLAETGDGNARPRRGARPIRALIVTPTRELAAQIGDSMTTYGRHLPLRNTVIFGGVNQN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L RG D+L+ TPGR+LD  ++G + ++ +E+ V+DEADRMLDMGFI  I+ I + 
Sbjct: 121 RQVDALRRGIDILVATPGRLLDLMDQGYIHLDRLEVFVLDEADRMLDMGFIHDIRKIVAA 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           VP  RQTLLFSATM  E+Q ++   LQ P ++ V   S+ AET+E C          K +
Sbjct: 181 VPSERQTLLFSATMPGEIQSLAAGLLQEPVKVSVTPESTAAETVEQCVY--LVSREDKQS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL +LL+    M   ++F   K     +   L K      AIHGN  Q +R++ L +FK 
Sbjct: 239 LLTELLRDDPEMAKVLVFSRTKHGADRVAKRLSKSNIPAQAIHGNKSQNARLRALESFKR 298

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G  +++VASD+AARGLDI  + HV NFD+PN  E Y+HRIGRTGRAG  G A +  A E+
Sbjct: 299 GDTRVLVASDIAARGLDIDALSHVVNFDLPNEPETYVHRIGRTGRAGCEGVAMSFCADEE 358

Query: 354 IKHIDAIEKLIEKKV 368
             ++ +IE+LI++ +
Sbjct: 359 RGYLRSIERLIDQLI 373


>gi|115375824|ref|ZP_01463075.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
 gi|310820250|ref|YP_003952608.1| ATP-dependent RNA helicase rhle [Stigmatella aurantiaca DW4/3-1]
 gi|115367134|gb|EAU66118.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
 gi|309393322|gb|ADO70781.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1]
          Length = 496

 Score =  318 bits (814), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 167/372 (44%), Positives = 233/372 (62%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ AV   GY  PTPIQ + IP  L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MTFDELKLSEPLLRAVKAEGYTTPTPIQQRAIPPALTGQDVLGCAQTGTGKTAAFALPIL 60

Query: 61  TILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L  GR    A+ R  R L+L PTRELA+Q+AD+F+ YG+   L+ A++ GG+   AQ 
Sbjct: 61  HRLSAGRSPPPAQGRPIRVLVLTPTRELASQIADSFQAYGRFTGLSWAVIFGGVGQHAQE 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG DVLI TPGR+LD   +G +    +E+ V+DEADRMLDMGFI  ++ I S +P 
Sbjct: 121 QTLRRGVDVLIATPGRLLDLMGQGLVSYKALEVFVLDEADRMLDMGFIHDVKRIISALPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSATM  E+Q +++  L++P R+EV   S+TAET+E      + +  +K  LL 
Sbjct: 181 KRQTLFFSATMPPEIQSLAQGILKSPVRVEVTPESTTAETVEQKMF--FVEREQKRHLLV 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL    +++  ++F   K     +   L     S  AIHGN  Q +R + L  FK+G+ 
Sbjct: 239 HLL-GDASIRRALVFTRTKHGANRVAKHLASSRISAEAIHGNKSQNARERALGAFKDGSC 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G A +    E+  +
Sbjct: 298 RVLVATDIAARGIDIEGITHVINFDLPNIPESYVHRIGRTGRAGAVGTALSFCDGEERAY 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+ I ++V
Sbjct: 358 LRDIERTIRRQV 369


>gi|152981130|ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151281207|gb|ABR89617.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 513

 Score =  318 bits (814), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 165/370 (44%), Positives = 235/370 (63%), Gaps = 8/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL+P+++ A+ D GYV PTPIQ + IP+VLQ  DV G AQTGTGKTA F LP++ +
Sbjct: 38  FEDFGLAPEILRALSDQGYVHPTPIQAEAIPVVLQGIDVMGAAQTGTGKTAGFSLPIIQL 97

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVADN + Y ++  L   ++ GG+    Q  
Sbjct: 98  LMAHANSSASPARHPVRALILTPTRELADQVADNVKAYSRHTPLRSVVVFGGVDMAPQTA 157

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G +++I TPGR+LDH  +  L ++  +ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 158 ALRSGVEIVIATPGRLLDHIQQKTLNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQ 217

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ L+FSAT + E++K++  FL++P  IEV   ++TAE +    +    +   K   +  
Sbjct: 218 RQNLMFSATFSPEIKKLAATFLKDPVTIEVARSNATAENVTQ--IVYKVEEGDKGDAVSY 275

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++ +  +K  I+F N K     L   LE +G    AIHG+  Q  RM  L  FK GTI+
Sbjct: 276 IIRERG-LKQVIVFSNTKIGASRLARQLENEGVKASAIHGDKSQAERMAALEAFKNGTIE 334

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+D+P  AE+Y+HRIGRTGRAG  G A +L + +D + +
Sbjct: 335 VLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLYSDKDARLL 394

Query: 358 DAIEKLIEKK 367
             IEK+I+ K
Sbjct: 395 VDIEKMIKHK 404


>gi|121593545|ref|YP_985441.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
           JS42]
 gi|120605625|gb|ABM41365.1| DEAD/DEAH box helicase domain protein [Acidovorax sp. JS42]
          Length = 484

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 168/372 (45%), Positives = 232/372 (62%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++ L L+  +  AV + GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L  
Sbjct: 5   YSTLALAEPLKRAVAEMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQR 64

Query: 63  LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L K      +  R P R L+L PTRELA QVA     Y K   L   ++ GG+  + Q  
Sbjct: 65  LLKHENSSASPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQTI 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P  
Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R TLLFSAT + E+++++ ++LQ+P  IEV  P+ TA T+E  F A      ++   ++ 
Sbjct: 185 RTTLLFSATFSPEIKRLAGSYLQDPITIEVARPNETASTVEQRFFAVDGDDKRRA--IRH 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L  +  +K   IF N K     L  SLE+ G    A+HG+  Q  R+K L  FK G + 
Sbjct: 243 VLNERG-LKQAFIFVNSKLGCARLARSLERDGLKTAALHGDKSQDERLKALEAFKSGEVD 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+V +D+AARGLDI DV  VFN+DVP  AE+Y+HRIGRTGRAG  G A TL A  D + +
Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLAASSDTRLV 361

Query: 358 DAIEKLIEKKVD 369
             IEKLI+KK++
Sbjct: 362 ADIEKLIKKKIE 373


>gi|237745550|ref|ZP_04576030.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
 gi|229376901|gb|EEO26992.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
          Length = 470

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 182/458 (39%), Positives = 274/458 (59%), Gaps = 18/458 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F D GL+ +++ A+ D GY  PTPIQ + IP++L+  DV G AQTGTGKTA + LP+L +
Sbjct: 17  FGDFGLASEILKALDDLGYSSPTPIQSQAIPVILEGKDVMGAAQTGTGKTAGYSLPVLQS 76

Query: 62  ILEKGRARV---RMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +L    A +   R P R LIL PTRELA QV ++  KY K  +L  A++ GG+    Q  
Sbjct: 77  LLYYANASMSPARHPVRALILVPTRELADQVYEDVRKYAKYTSLRTAVVFGGVDMSGQTG 136

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GA++LI TPGR+LDH  +  + +    ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 137 ILRAGAEILIATPGRLLDHIQQKNVNLGQTGILVLDEADRMLDMGFLPDLQRIVNLLPKK 196

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT + E++K++ +FL  P  +EV   ++TA+ + +  +    A  +     L 
Sbjct: 197 RQNLLFSATFSSEIRKLANSFLDRPVSVEVARQNATADNVTQTVYRIDEADKNDAVEYLL 256

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L + +  +    IF N K     L   LEK+G    AIHG+  Q  RM  L  FKEG I
Sbjct: 257 RLHKREQVL----IFSNTKAGASRLARQLEKKGLKAAAIHGDKTQAERMAALDAFKEGNI 312

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL I ++  V NFD+P  AE+Y+HRIGRTGRAG  G+A +L + +D K 
Sbjct: 313 TVLVATDVAARGLHIEELPCVINFDLPFVAEDYVHRIGRTGRAGASGEAISLCSAKDEKL 372

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNY 413
           ++ IEKLI++K+       S  +P + K  +++   A   +++   P KS G +++ ++ 
Sbjct: 373 LNEIEKLIKRKLPV----HSIPDPEIRKEKVSKGEAAGADKRSERSPYKSIGLEKKGRDP 428

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSL-GFRGNMP 450
              + ++P   SE   + ++ +Q++ A  L    G +P
Sbjct: 429 WFDRPYVPEASSENGKETEKPVQKSLARPLAALLGGIP 466


>gi|319763758|ref|YP_004127695.1| dead/deah box helicase domain protein [Alicycliphilus denitrificans
           BC]
 gi|330823978|ref|YP_004387281.1| DEAD/DEAH box helicase domain-containing protein [Alicycliphilus
           denitrificans K601]
 gi|317118319|gb|ADV00808.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           BC]
 gi|329309350|gb|AEB83765.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           K601]
          Length = 480

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 171/371 (46%), Positives = 231/371 (62%), Gaps = 8/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++ L L+  +  AV D GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L  
Sbjct: 5   YSTLALAEPLKRAVADMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQR 64

Query: 63  LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L K      +  R P R L+L PTRELA QVA     Y K   L   ++ GG+  + Q  
Sbjct: 65  LLKHENSSASPARHPVRALVLLPTRELADQVAQQIAMYAKYTKLRSTVVFGGMDMKPQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P  
Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R TLLFSAT + E+++++ ++LQ+P  IEV  P+ TA T+E  F +   Q   K   ++ 
Sbjct: 185 RTTLLFSATFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQRFFSV--QDDDKRRAIRH 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L ++  +K   IF N K     L  SLE+ G    A+HG+  Q  R+K L  FK G + 
Sbjct: 243 VL-TERGLKQAFIFVNSKLGCARLARSLERDGLKTAALHGDKSQDERLKALEAFKSGDVD 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+V +D+AARGLDI DV  VFN DVP  AE+Y+HRIGRTGRAG  G A TLV   D + +
Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNHDVPFNAEDYVHRIGRTGRAGASGLAVTLVGSGDARLV 361

Query: 358 DAIEKLIEKKV 368
             IEKLI+KKV
Sbjct: 362 ADIEKLIKKKV 372


>gi|222110266|ref|YP_002552530.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221729710|gb|ACM32530.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
          Length = 484

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 168/372 (45%), Positives = 232/372 (62%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++ L L+  +  AV + GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L  
Sbjct: 5   YSTLALAEPLKRAVAEMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQR 64

Query: 63  LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L K      +  R P R L+L PTRELA QVA     Y K   L   ++ GG+  + Q  
Sbjct: 65  LLKHENSSASPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQTI 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P  
Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R TLLFSAT + E+++++ ++LQ+P  IEV  P+ TA T+E  F A      ++   ++ 
Sbjct: 185 RTTLLFSATFSPEIKRLAGSYLQDPITIEVARPNETASTVEQRFFAVDGDDKRRA--IRH 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L  +  +K   IF N K     L  SLE+ G    A+HG+  Q  R+K L  FK G + 
Sbjct: 243 VLNERG-LKQAFIFVNSKLGCARLARSLERDGLKTAALHGDKSQDERLKALDAFKSGEVD 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+V +D+AARGLDI DV  VFN+DVP  AE+Y+HRIGRTGRAG  G A TL A  D + +
Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLAASSDTRLV 361

Query: 358 DAIEKLIEKKVD 369
             IEKLI+KK++
Sbjct: 362 ADIEKLIKKKIE 373


>gi|266619246|ref|ZP_06112181.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479]
 gi|288869241|gb|EFD01540.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479]
          Length = 432

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 176/420 (41%), Positives = 260/420 (61%), Gaps = 16/420 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  ++ A+ + GY  P+PIQ K IP VL   DV G AQTGTGKTA+F LP++
Sbjct: 1   MTFKDLQLSAPLLKALEEKGYTTPSPIQEKAIPHVLAGKDVLGCAQTGTGKTAAFALPII 60

Query: 61  TILEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L +    +   R+ R+LIL PTRELA Q+A+NF++YG +  +  A++ GG+    Q K
Sbjct: 61  QNLMRPSDKKHSKRVIRSLILTPTRELALQIAENFKEYGSHTPVRCAVIFGGVSAVPQIK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L+RG D+L+ TPGR+ D  ++G++ ++++E+ V+DEADRMLDMGFI  ++ I SL+P  
Sbjct: 121 ELQRGIDILVATPGRLNDLIHQGEISLSHVEMFVLDEADRMLDMGFIHDVKKIISLLPVK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTLLFSATM  E+Q ++E  L NP  +EV   SS  + IE      Y     K ALL  
Sbjct: 181 KQTLLFSATMPPEIQALTEKLLHNPAVVEVTPVSSIVDLIEDSLY--YVDKENKRALLVH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ ++ + + ++F   K     +   L K   +  AIHG+  Q +R K LS FK GT++
Sbjct: 239 LLK-REAITSTLVFTRTKHGADRMAKFLTKNRINAAAIHGDKSQGARQKALSQFKAGTVR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ A+D+AARG+DI ++  V NFD+PN  E Y+HRIGRTGRAG  G+A +    E+  ++
Sbjct: 298 VLAATDIAARGIDIEELSCVINFDLPNVPETYVHRIGRTGRAGLGGRAISFSDIEEKAYV 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNP-PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           + IEKLI KK+  +       +P P+    + Q    ++  P P K+TG +  K+   S+
Sbjct: 358 EDIEKLIGKKIPVVKD-----HPFPMTVFTVPQ----KETKPRPVKNTGRNDAKRPQKSK 408


>gi|302878537|ref|YP_003847101.1| DEAD/DEAH box helicase domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302581326|gb|ADL55337.1| DEAD/DEAH box helicase domain protein [Gallionella
           capsiferriformans ES-2]
          Length = 461

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 167/396 (42%), Positives = 251/396 (63%), Gaps = 10/396 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FADL L+P+++ A++++GY KPTPIQ + IPLVL+  D+   AQTGTGKTA+F LP+L 
Sbjct: 3   NFADLNLAPEILRALIESGYTKPTPIQAQAIPLVLEGSDLMAGAQTGTGKTAAFALPVLQ 62

Query: 62  ILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L    +    P     R LIL PTRELA QV  + + Y K  +L   ++ GG+  + Q 
Sbjct: 63  KLMPFASSSPSPARHAVRALILVPTRELAIQVEASVKAYAKYSHLRSLVVFGGVDIKTQT 122

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G ++L+ TPGR+LDH  +  + +N +++LV+DEADRMLDMGF+P ++ I +L+P 
Sbjct: 123 PHLRAGIEILVATPGRLLDHIEQKSVQLNQVQMLVLDEADRMLDMGFMPDLKRILALLPR 182

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ L+FSAT + E++K+S  FL NPK IEV   ++T+E +          + +K ALL 
Sbjct: 183 QRQNLMFSATFSAEIKKLSAEFLVNPKLIEVARSNATSENVTQKVY--LVGHEEKHALLA 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL+    ++  ++F   K     +   L+++GF+  AIHG+  Q  RM+ L  FK G I
Sbjct: 241 HLLRGTGAVQT-LVFTKTKLTASRIARQLQREGFASDAIHGDKSQLERMQALDAFKSGKI 299

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARGLDI  +  V N+++P+ AE+Y+HRIGRTGRAG  G A +LVA E+ K+
Sbjct: 300 TVLIATDVAARGLDIDQLPVVINYEIPSAAEDYVHRIGRTGRAGAFGVAISLVAPEEEKY 359

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           +  IEKLI+  +  +  +L +   PL +   A+  H
Sbjct: 360 LLEIEKLIKCTIQRV--ELPASEKPLARAPRAESAH 393


>gi|260223394|emb|CBA33917.1| Putative ATP-dependent RNA helicase rhlE [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 520

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 173/375 (46%), Positives = 238/375 (63%), Gaps = 9/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA L L+  +  AV + GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L
Sbjct: 22  MAFAQLQLADPLARAVAEMGYTTMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFALPLL 81

Query: 61  TILEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L K      +  R P R L+L PTRELA QVA   + Y K  NL  A++ GG+  + Q
Sbjct: 82  QRLMKHENASTSPARHPVRALVLLPTRELADQVAQQVKLYAKYTNLRSAVVFGGMDMKPQ 141

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L+ G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P
Sbjct: 142 TLELKAGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 201

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            TR TLLFSAT + E+++++ ++LQNP  IEV   ++TA T+E  F        K+ ALL
Sbjct: 202 KTRTTLLFSATFSPEIKRLANSYLQNPITIEVARSNATASTVEQHFYRVNDD-DKRHALL 260

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            Q+++S+D +K   +F N K     L  +LE+ G    A+HG+  Q  R+K L  FK+G 
Sbjct: 261 -QIVRSKD-IKQAFVFVNSKLGCARLTRALERDGLRAAALHGDKSQDERLKALEAFKKGE 318

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDI 354
           + L+V +D+AARGLDI DV  VFN D+P  AE+Y+HRIGRTGRAG  G A + V    D 
Sbjct: 319 VDLLVCTDVAARGLDIKDVPAVFNMDIPFNAEDYVHRIGRTGRAGASGLAVSFVGGGNDA 378

Query: 355 KHIDAIEKLIEKKVD 369
           + +  IEKLI+ K++
Sbjct: 379 RLVADIEKLIKTKIE 393


>gi|88705999|ref|ZP_01103707.1| ATP-dependent RNA helicase RhlE [Congregibacter litoralis KT71]
 gi|88699713|gb|EAQ96824.1| ATP-dependent RNA helicase RhlE [Congregibacter litoralis KT71]
          Length = 443

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 174/400 (43%), Positives = 249/400 (62%), Gaps = 7/400 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS +++ AV   GY K TPIQ K IPLVL+  D+   AQTGTGKTA F LPML
Sbjct: 1   MLFKDLSLSAELLRAVEKQGYDKATPIQQKAIPLVLEGSDLLAGAQTGTGKTAGFTLPML 60

Query: 61  TILEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L+    G A+   P+ L+L PTRELAAQV ++   YG       A++ GG+    Q +
Sbjct: 61  QRLQNKYPGTAK-SYPKALVLTPTRELAAQVHESVRDYGAYLPFKSAVIFGGVSINPQKQ 119

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL +G DV++ TPGR+LDH  +  + ++ IEILV+DEADRMLDMGFI  I+ +  ++P  
Sbjct: 120 KLIKGVDVVVATPGRLLDHVQQRSIDLSKIEILVLDEADRMLDMGFIHDIRRVMKVIPKQ 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT ++E++K++  FL+NP++I+V TP +TA  +    V    +  K+  L QQ
Sbjct: 180 RQTLLFSATFSNEIKKLASEFLENPQQIQV-TPQNTATKLVSQRVYPVDKGRKRELLSQQ 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +   +   +  +IF   K     L   L K G S  AIHGN  Q +R + L+ FK G I+
Sbjct: 239 I--GEGNWQQVLIFTRTKHGANRLAEQLSKDGISSAAIHGNKSQGARTRALAEFKSGAIR 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARG+DI  + HV N+++PN AE+YIHRIGRT RAG+ G A +LV  +++K +
Sbjct: 297 ALVATDIAARGIDIDKLPHVVNYELPNVAEDYIHRIGRTARAGQEGHAISLVCVDELKLL 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
             IEKL+   ++ +      ++P ++   I      R+N+
Sbjct: 357 RDIEKLLGSAIEKVYLPGFEIDPSIKAEPIQNGRGGRQNS 396


>gi|307824474|ref|ZP_07654699.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307734458|gb|EFO05310.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 441

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 172/408 (42%), Positives = 250/408 (61%), Gaps = 14/408 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+ +++ AV D GYV PTP+Q K IPL+L+  DV   AQTGTGKTASF LP+L
Sbjct: 1   MSFAQLGLADELLKAVADQGYVTPTPVQQKAIPLILEGKDVLAGAQTGTGKTASFTLPLL 60

Query: 61  TILEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L +      + R  R LIL PTRELAAQV ++ + YG +       ++GG     Q +
Sbjct: 61  QRLAENHDPHQKPRRVRALILVPTRELAAQVYESVKTYGAHLPFHAEAVVGGASIGIQTR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG D+++ TPGR++DH  +  + ++N+E+LV+DEADRMLDMGF+P I+ + +L+P  
Sbjct: 121 QLRRGCDIVVATPGRLIDHVQQRNINLSNVEVLVLDEADRMLDMGFLPDIKQLMALIPKK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+LLFSAT+ + ++ ++   L NP  +EV   ++TAE +         +Y ++  LL  
Sbjct: 181 RQSLLFSATVPNAIKSLAAQLLNNPVEVEVAKQNATAENVAERVYGIGREYKRE--LLSY 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ S +  K  ++F   K     L   L + G    A+HG+  Q +R K L  FK G + 
Sbjct: 239 LIGS-NNWKQVLVFVRTKHGADRLEKQLIEDGIRTAALHGDKTQGARNKALEQFKTGKVS 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI D+ HV NFDVP   E+YIHRIGRTGRAG +G+A +LV  E+   +
Sbjct: 298 VLVATDIAARGLDIDDLPHVVNFDVPQVPEDYIHRIGRTGRAGANGEALSLVCPEEAWML 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
             IEKL+++++  +  D       L+ ID  + N        P K+TG
Sbjct: 358 VEIEKLLKRQIPRV-ADTGYEPVSLKVIDAPKKN-------APNKTTG 397


>gi|302335558|ref|YP_003800765.1| DEAD/DEAH box helicase domain protein [Olsenella uli DSM 7084]
 gi|301319398|gb|ADK67885.1| DEAD/DEAH box helicase domain protein [Olsenella uli DSM 7084]
          Length = 510

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 164/389 (42%), Positives = 233/389 (59%), Gaps = 12/389 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA LGL    + AV D GY  PTP+Q ++IP  L+  DV   AQTGTGKTA+F+LP L 
Sbjct: 44  DFASLGLGALTLAAVRDMGYEVPTPVQARSIPPALRGRDVIAAAQTGTGKTAAFLLPSLD 103

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   +A  + P  L++ PTRELA Q+ +           T A ++GG+ +E Q + L R
Sbjct: 104 GLPHAQA-GQGPLMLVVTPTRELAQQIDEVARAICARTGHTAATVVGGVGYEPQRRALRR 162

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+L+ TPGR++D  ++G   +  +++LV+DEADRMLDMGF+P ++ I    P  RQTL
Sbjct: 163 GCDLLVATPGRLIDLMDQGDAHLGEVQVLVLDEADRMLDMGFLPAMRKIVGRTPEGRQTL 222

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +   +E+ +++P R+E+    + AETIE  FV   +  +K  AL   L   
Sbjct: 223 LFSATLDGHVTSNTESLVKDPVRVEIAHKGTAAETIEQ-FVLGVSPEAKHAALTHVL--E 279

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  I+FC  K     +C  L ++GFS   IHGN  Q  R + L  F+EG++ ++VA
Sbjct: 280 NEGAERVIVFCRGKHRADGICRRLRRKGFSAAPIHGNRSQNQRERALRGFREGSVGVLVA 339

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+DIPDV +V NFDVP  AE+YIHRIGRTGRAG  G A T V ++D   +  +E
Sbjct: 340 TDVLARGIDIPDVAYVVNFDVPGDAEDYIHRIGRTGRAGESGWALTFVTEDDYLDLRDVE 399

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           KL+        G +    P    ID+ +H
Sbjct: 400 KLM--------GRVVPTYPRAHGIDLGEH 420


>gi|56552313|ref|YP_163152.1| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241761630|ref|ZP_04759717.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260753995|ref|YP_003226888.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|56543887|gb|AAV90041.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241373938|gb|EER63471.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258553358|gb|ACV76304.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 458

 Score =  317 bits (812), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 161/373 (43%), Positives = 237/373 (63%), Gaps = 4/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGL   +V A+   GY KPTPIQ + IP +L+  D+CGIAQTGTGKTA+F LP +
Sbjct: 6   VSFKTLGLDSSLVQALDGLGYSKPTPIQAQAIPHLLEGKDLCGIAQTGTGKTAAFALPSI 65

Query: 61  TILEKG-RARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L    +AR  R  R LIL PTRELA+Q+A     Y ++  ++V  + GG+P   Q + 
Sbjct: 66  HYLATNPQARPQRGCRMLILSPTRELASQIARACNDYTRHLRMSVNAVFGGVPIGRQMRM 125

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RG D+L+ TPGR+LD  ++  L++ ++E+ V+DEAD+MLD+GFI  ++ I  L+P  R
Sbjct: 126 LDRGTDILVATPGRLLDLIDQRALVLKDVEVFVLDEADQMLDLGFIHALRRIDKLLPKNR 185

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM   +Q++S  FL +P  + V   SSTAE +E   +  +   S+K ALL   
Sbjct: 186 QTLFFSATMPKTIQELSSQFLSDPVTVSVAPQSSTAERVEQFGI--FVNQSEKQALLTIT 243

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L++   +   ++F   K     +   LE  G    AIHGN  Q  R + L+ F+ G +++
Sbjct: 244 LKNTPGLDRALVFTRTKHGADRVVRHLEAAGLPAAAIHGNKSQPQRERALNAFRNGRLKI 303

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P V HVFN+++PN AE Y+HRIGRT RAGR G+A + +A ++  ++ 
Sbjct: 304 LVATDIAARGIDVPGVSHVFNYELPNVAEQYVHRIGRTARAGRDGQAISFIANDERSYLR 363

Query: 359 AIEKLIEKKVDWL 371
           +IE+L   K+  L
Sbjct: 364 SIERLTRVKLQIL 376


>gi|118590800|ref|ZP_01548201.1| ATP-dependent RNA helicase protein [Stappia aggregata IAM 12614]
 gi|118436776|gb|EAV43416.1| ATP-dependent RNA helicase protein [Stappia aggregata IAM 12614]
          Length = 436

 Score =  317 bits (812), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 175/419 (41%), Positives = 249/419 (59%), Gaps = 13/419 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGLS  +V AV + GY  PTPIQ K IPL+L+  D+ G+AQTGTGKTA+F LP++ 
Sbjct: 3   DFQSLGLSNGLVTAVSENGYDTPTPIQQKAIPLILEGRDLMGLAQTGTGKTAAFGLPLID 62

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L  EK +A  +  R LIL PTREL  Q+A N   + K+  L V+ ++GG+    Q K+L
Sbjct: 63  RLQAEKKKAVPKGTRALILAPTRELVNQIAKNLISFLKHTPLRVSSVVGGVSINGQIKRL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD  +R  + +     LV+DEAD+MLD+GFI  ++ I  LV   RQ
Sbjct: 123 SKGTDILVATPGRLLDLVDREAIDLRTASYLVLDEADQMLDLGFIHALRRIAGLVADKRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  ++ ++++++L+NP+R+EV     TA+ +    V    + SK   L+ QL 
Sbjct: 183 TLLFSATMPKQINELAQSYLRNPERVEVAPAGKTADKVTQS-VHFMDKNSKGDFLVDQLR 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D +   ++FC  K     L   L   G S  +IHGN  Q  R + +   +EGTI ++
Sbjct: 242 DKPDGLS--LVFCRTKHGAERLMRKLSHSGISAGSIHGNKSQNQRDRAIKELREGTINVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V HV+NF++P  AE Y+HRIGRT RAG  G+A  L A E+I     
Sbjct: 300 VATDVAARGIDIPGVSHVYNFELPEVAEAYVHRIGRTARAGAEGEAIALCAPEEIGLFRQ 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           IEKLI  ++    G++    PP+     A    A++     +  +G    KK +  Q S
Sbjct: 360 IEKLIGIEITVAGGEI----PPMS----AASGRAKRGGSNNRNGSGKPASKKPFRKQSS 410


>gi|317404315|gb|EFV84742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
          Length = 413

 Score =  317 bits (812), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 167/377 (44%), Positives = 237/377 (62%), Gaps = 12/377 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  ++ A+ D GY  PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L +
Sbjct: 7   FADLGLADSLLRAIADTGYTAPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFTLPILHL 66

Query: 63  LEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L + +   R    PR LIL PTREL AQVA++ + YGK+ +LT  ++ GG+    Q   L
Sbjct: 67  LMQSKPEARKAGRPRCLILTPTRELTAQVAESVQTYGKHTSLTSMVMFGGVNINPQISAL 126

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+L+ TPGR+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 127 RKPLDILVATPGRLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKILALLPKQRQ 186

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ ++   L NP  + V TP +TA  +    V    Q+ K+  L+  ++
Sbjct: 187 NLLFSATFSDEIRSLARGVLNNPGEVSV-TPRNTATELVTQTVHLVEQHHKR-DLISHII 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +      ++F   K     L   L K G +  AIHGN  Q +R + L+ FK+GT+ ++
Sbjct: 245 R-ESGWHQVLVFTRTKHGANRLAEKLVKDGLTAAAIHGNKSQSARTRALAGFKDGTVTVL 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV   +IK +  
Sbjct: 304 VATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDNSEIKLLKD 363

Query: 360 IEKLIEKKV------DW 370
           IE+LI+K +      DW
Sbjct: 364 IERLIKKTIERKPVADW 380


>gi|149278660|ref|ZP_01884796.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
 gi|149230655|gb|EDM36038.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
          Length = 435

 Score =  317 bits (812), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 164/371 (44%), Positives = 236/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY +PTPIQ ++IP +L   D+ G AQTGTGKTA+F +PML
Sbjct: 1   MLFEELNLIEPILKALQTEGYTQPTPIQEQSIPTILTSRDLLGCAQTGTGKTAAFAIPML 60

Query: 61  TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L K     + PR    L+L PTRELA Q+ ++F+ YG+N +L   ++ GG+  +AQ  
Sbjct: 61  QLLNKEHQNAKGPRPIRALVLTPTRELAIQIEESFKAYGRNLSLRHLVIFGGVGQKAQTD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+LI TPGR+LD  N+G + + +IEI V+DEADRMLDMGFI  ++   + +P  
Sbjct: 121 ALHRGVDILIATPGRLLDLMNQGFINLKDIEIFVLDEADRMLDMGFIHDVKKTIAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL FSATM  E+QK++   L +P ++EV   SSTAE IE      + +   K  LL  
Sbjct: 181 RQTLFFSATMPPEIQKLANTILVDPLKVEVTPVSSTAEKIEQMIY--FVEKGDKKNLLIH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +LQ + T++  ++F   K     +   L K G    AIHGN  Q +R + L+NFK  T +
Sbjct: 239 ILQDK-TIQTALVFTRTKHGADRVVKDLIKVGVKAEAIHGNKSQNARQRALTNFKAKTTR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HV N+++PN  E Y+HRIGRTGRAG  G +F+    E+ + +
Sbjct: 298 ILVATDIAARGIDVDELTHVINYELPNIPETYVHRIGRTGRAGNSGISFSFCDGEEKEFL 357

Query: 358 DAIEKLIEKKV 368
           D IEKLI  K+
Sbjct: 358 DDIEKLIALKI 368


>gi|312882439|ref|ZP_07742180.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369839|gb|EFP97350.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 452

 Score =  317 bits (812), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 165/367 (44%), Positives = 233/367 (63%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEELGYDTPSPIQKQAIPAVLSGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L+   R +    R LIL PTRELAAQ+ +N  KY ++  LT  ++ GG+    Q  KL
Sbjct: 61  ERLDNNQRVKGNHVRALILTPTRELAAQIQENVFKYSRHQRLTSQVVFGGVKINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DVL+ TPGR++D + +  +  + +E+LV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGCDVLVATPGRLMDLYQQKAIKFDQLEVLVLDEADRMLDMGFIHDIRKILNLLPKKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + +P  I V   +STA T+E       A   +K  +L +L+
Sbjct: 181 NLLFSATFSAEIRQLAKGLVNDPVEISVTPQNSTAVTVEQSVYP--ADKRQKAPMLVELI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q   +  ++FC  K     L   L K   +  AIHGN  Q +R + LS FK G I+++
Sbjct: 239 -TQGKWQQVLVFCRTKHGANRLAQFLNKAEITAAAIHGNKSQGARTRALSEFKTGEIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NFD+PN AE+Y+HRIGRTGRAG  GKAF+LV  ++   +  
Sbjct: 298 VATDIAARGIDIPQLPQVVNFDLPNVAEDYVHRIGRTGRAGEAGKAFSLVEADEASDLFG 357

Query: 360 IEKLIEK 366
           IE+LI+K
Sbjct: 358 IERLIQK 364


>gi|332533777|ref|ZP_08409633.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036708|gb|EGI73171.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 464

 Score =  317 bits (812), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 160/386 (41%), Positives = 243/386 (62%), Gaps = 5/386 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AVL+ GY  PTPIQ + IP +++R DV   AQTGTGKTA F LP++
Sbjct: 1   MSFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLI 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G +A+    R LIL PTRELA QV++N E+Y K+ +++  ++ GG+    Q ++L
Sbjct: 61  ERLSSGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR++D  N+  +  +++E+LV+DEADRMLDMGFI  I+ + + +P  RQ
Sbjct: 121 RKGVDILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++ +++  + +P  I V   ++TA+++  C  A     ++K ALL  L+
Sbjct: 181 NLMFSATFSDEIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAV--DKTRKTALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++ D  +  ++F   K     L   LE+      AIHGN  Q +R+K L  FK G ++++
Sbjct: 239 RTND-WQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLDI ++ HV N+D+PN  E+Y+HRIGRTGRAG  G A + V  +D   +  
Sbjct: 298 VATDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGATGHAISFVTVDDAVDLYG 357

Query: 360 IEKLIEKKVDWLNGD-LSSLNPPLEK 384
           IE+ I + +     D    +NP  E+
Sbjct: 358 IERFIGELIPRAEEDGFEPINPVAER 383


>gi|91789374|ref|YP_550326.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
 gi|91698599|gb|ABE45428.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
          Length = 579

 Score =  317 bits (812), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 164/374 (43%), Positives = 238/374 (63%), Gaps = 8/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AVL+ GY  PTPIQ + IP VL   D+ G AQTGTGKTA+F LPML
Sbjct: 1   MTFEELKLAPAILKAVLEQGYDTPTPIQAQAIPAVLAGSDLLGGAQTGTGKTAAFTLPML 60

Query: 61  TILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L        R  V   R LI+ PTRELAAQV ++   YGK  +LT  ++ GG+   AQ
Sbjct: 61  QRLSTEPRLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYLDLTSMVMFGGVGMGAQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL RG D+L+ TPGR+LDH  +G L ++ ++ILV+DEADRMLDMGFI  I+ + +LVP
Sbjct: 121 IDKLRRGVDILVATPGRLLDHAGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLALVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE+++++   L++P  I+V   ++T + I           SKK ALL
Sbjct: 181 KHKQSLLFSATFSDEIRELANGLLRDPLHIQVTPRNTTVQRITQTIHPV--GRSKKKALL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             ++   +     ++F   K    N+   L K G    A+HGN  Q +R + L  FK+GT
Sbjct: 239 THIINEHN-WSQVLVFTRTKFGANNVAEHLTKNGIEAMALHGNKSQTARTQALQGFKDGT 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ +VA+D+AARG+DI ++ HV N+++PN +E+Y+HRIGRTGRAG  G+A +LV  ++  
Sbjct: 298 IRALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGEAVSLVCLDEEG 357

Query: 356 HIDAIEKLIEKKVD 369
            +  IE+  ++ ++
Sbjct: 358 FMQDIERFTKQNIE 371


>gi|148378643|ref|YP_001253184.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC
           3502]
 gi|153933936|ref|YP_001383027.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC
           19397]
 gi|153937665|ref|YP_001386574.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. Hall]
 gi|148288127|emb|CAL82195.1| putative ATP-dependent RNA helicase rhle [Clostridium botulinum A
           str. ATCC 3502]
 gi|152929980|gb|ABS35480.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC
           19397]
 gi|152933579|gb|ABS39078.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. Hall]
          Length = 425

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 166/371 (44%), Positives = 241/371 (64%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   +  A+ + GY K TPIQ K+IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGRDLVGCAQTGTGKTAAFAVPVL 60

Query: 61  TILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L K +   + PRT   L+L PTRELA Q+ ++FE YGK  NL  A++ GG+    Q K
Sbjct: 61  QNLSKDKKVNKNPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+LI TPGR+LD FN+  + + NIE  V+DEADRMLDMG I  ++ I S +P  
Sbjct: 121 ALREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKA 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  E+ K+ ++ +++P R+EV   SST +TI       + +  +K ALL+ 
Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVY--HVRKKQKRALLKH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ + ++++ ++F   K+    +   L + G    AIHGN  Q +R + L+NFKEG I+
Sbjct: 239 LLKDK-SIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HVFN+++P+  E Y+HRIGRTGRAG  G A +    E+ K +
Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDIPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357

Query: 358 DAIEKLIEKKV 368
            AIEKLI K++
Sbjct: 358 KAIEKLINKEI 368


>gi|261341381|ref|ZP_05969239.1| ATP-dependent RNA helicase RhlE [Enterobacter cancerogenus ATCC
           35316]
 gi|288316692|gb|EFC55630.1| ATP-dependent RNA helicase RhlE [Enterobacter cancerogenus ATCC
           35316]
          Length = 457

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 165/387 (42%), Positives = 248/387 (64%), Gaps = 8/387 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P+++ ++ + GYV+PTPIQ K IP VLQ  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPEILRSIAEQGYVEPTPIQQKAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGR--ARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L K +  A+ R P R LIL PTRELAAQ+ +N   Y +  N+   ++ GG+    Q  
Sbjct: 61  ELLVKNQPHAKGRRPVRALILTPTRELAAQIGENVRDYSRYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAR 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +DE++ ++E  L NP  +EV   ++ +E + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDEIKALAEKLLHNPLEVEVARRNTASEQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q++  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLE 383
           +  IE+L++K++  +  +   ++P ++
Sbjct: 357 LRDIERLLKKEIPRITTEGYDVDPSIQ 383


>gi|27376558|ref|NP_768087.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA
           110]
 gi|27349699|dbj|BAC46712.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA
           110]
          Length = 530

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 163/366 (44%), Positives = 232/366 (63%), Gaps = 6/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL+  +  A+ +  YV PTPIQ +TIP  L   DV GIAQTGTGKTASF LP+L  
Sbjct: 18  FQDFGLAEPIARALSEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPILHR 77

Query: 63  LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L + R +   +  R L+L PTREL+ Q+ D+F  YG++  L+  L IGG+P   Q + L 
Sbjct: 78  LLEHRIKPQPKTTRVLVLSPTRELSGQILDSFNAYGRHIRLSSTLAIGGVPMGRQVRSLM 137

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G +VL+ TPGR+LD      L + ++E LV+DEADRMLDMGFI  I+ I + +P  RQT
Sbjct: 138 QGVEVLVATPGRLLDLVQSNGLKLGSVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQT 197

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  ++ +++++ L++P R+ V   SSTAE I    +     +S K A L +LL+
Sbjct: 198 LFFSATMPKDIAELADSMLRDPARVAVTPVSSTAERINQRIL--QVDFSAKPAFLTKLLK 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  +   ++F   K     +  +LEK G +  AIHGN  Q  R + L+ F+ G I+ +V
Sbjct: 256 DE-PINRALVFTRTKHGADKVVKTLEKAGIAASAIHGNKSQNHRERTLAQFRSGDIRTLV 314

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDA 359
           A+D+AARG+D+  + HV NFD+PN  E Y+HRIGRT RAG  G A +LVA  E++ ++  
Sbjct: 315 ATDIAARGIDVDGITHVINFDLPNVPETYVHRIGRTARAGAEGTAISLVAGGEELSYLRD 374

Query: 360 IEKLIE 365
           IE+LI+
Sbjct: 375 IERLIK 380


>gi|71908923|ref|YP_286510.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71848544|gb|AAZ48040.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 507

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 160/377 (42%), Positives = 247/377 (65%), Gaps = 8/377 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL+P+++ AVLD GY KPTPIQ + IPLV+   D+ G AQTGTGKTA+F LP+L
Sbjct: 23  ITFADLGLAPELLRAVLDEGYTKPTPIQAQAIPLVISGKDIMGGAQTGTGKTAAFTLPIL 82

Query: 61  TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             +    +    P     R LIL PTRELA QV ++ + Y K+  +      GG+    Q
Sbjct: 83  QRILPFASSSPSPAKHPVRALILAPTRELAMQVFESVKTYSKHTPIRAMCAYGGVDIRPQ 142

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L++G ++L+ TPGR+LDH     +  N+++ LV+DEADRMLDMGF+P +  I +++P
Sbjct: 143 IAELKKGVEILVATPGRLLDHVENKSVSFNSVQALVLDEADRMLDMGFVPDVTRILNMLP 202

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ+LLFSAT ++E++K+++  L++P  IEV   +  ++TI H  V   ++Y K+  LL
Sbjct: 203 AQRQSLLFSATFSEEIKKLADTMLKSPILIEVARRNQVSDTITH-RVHPVSEYGKR-GLL 260

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +LL+S + ++  I+FC  K+    L   L++ G    AIHG+  Q  R+K L  FK G 
Sbjct: 261 TKLLKSGE-IRQCIVFCRTKQGCSRLTRELQRAGIKADAIHGDKSQLERIKALEAFKGGE 319

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
              ++A+D+AARGLD+ D+ +V N+++P+  E+Y+HRIGRTGRAG+ G A +LV+  ++ 
Sbjct: 320 TDALIATDVAARGLDVDDLPYVINYELPHTPEDYVHRIGRTGRAGKKGNAISLVSAHEVC 379

Query: 356 HIDAIEKLIEKKVDWLN 372
           ++  IEKLI++ ++ + 
Sbjct: 380 YLVDIEKLIKRPIEQVE 396


>gi|182412765|ref|YP_001817831.1| DEAD/DEAH box helicase domain-containing protein [Opitutus terrae
           PB90-1]
 gi|177839979|gb|ACB74231.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
          Length = 409

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 163/371 (43%), Positives = 228/371 (61%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L LS  V+  V+ AGY  PTPIQ++ IP+VL   D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MPFKALQLSAPVLRGVVAAGYTDPTPIQLRAIPVVLGGGDLIGSAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T L  G    R PR L+LEPTRELAAQV   F  + +  +L    + GG+ +  Q  +L+
Sbjct: 61  TRL--GAHAARAPRVLVLEPTRELAAQVETAFRDFARFTDLRTVAVFGGVGYGLQRTELK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR++D+ +   + +  +EILV+DE DRMLDMGF+P +++I    P  RQT
Sbjct: 119 RGVDVIVATPGRLMDYLHDRTINLQGVEILVLDEVDRMLDMGFLPVVKDIIQRCPRQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+  E+Q V+   L+NP R+EV    S  E+++H      A   +K  LL+ LL 
Sbjct: 179 LFFSATVPPEIQAVASFALRNPTRVEVGVNRSVNESVKHALYPVAA--DQKFELLEALLA 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D   + ++F   K     +   L+    SV  +H N  Q  R++ L+ FK G  ++MV
Sbjct: 237 RTD-FDSVLVFSRTKHGADKIARKLKAANHSVAVLHANRSQNQRIEALAGFKSGKYEIMV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV N+DVP + E+Y+HRIGRTGRA   G AFTLV  E+   +  I
Sbjct: 296 ATDIAARGIDVAGVSHVINYDVPEKPEDYVHRIGRTGRAQAVGDAFTLVTPENAHDVRDI 355

Query: 361 EKLIEKKVDWL 371
           E+ I +K+  L
Sbjct: 356 ERFIGQKIPEL 366


>gi|296132950|ref|YP_003640197.1| DEAD/DEAH box helicase domain protein [Thermincola sp. JR]
 gi|296031528|gb|ADG82296.1| DEAD/DEAH box helicase domain protein [Thermincola potens JR]
          Length = 529

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 165/370 (44%), Positives = 235/370 (63%), Gaps = 6/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS +++ AV + G+ +PTPIQ + IP++L  HDV G AQTGTGKTA+F +P   I
Sbjct: 7   FESLQLSRRILQAVKEMGFEEPTPIQAEAIPVLLNGHDVIGQAQTGTGKTAAFGIP---I 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEK   R R  + L++ PTRELA QVA+   K GK  ++    + GG   + Q   L+RG
Sbjct: 64  LEKLNPRYRAVQALVITPTRELAIQVAEEIMKLGKFKDVRTLAVYGGQSIDRQIGALKRG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+LDH NRG L + ++++LV+DEAD MLDMGFI  I+ I    P TRQTLL
Sbjct: 124 VQVVVGTPGRLLDHINRGTLRLQHLKMLVLDEADEMLDMGFIDDIEAIIKETPETRQTLL 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+Q+++  +L+NP+ + V+    T  +IE  +     +   K   L ++L++ 
Sbjct: 184 FSATMPHEIQQLARKYLKNPRLVAVSKDELTVPSIEQVYYEV--REKTKLESLCRVLETI 241

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D +   IIFC  K+ V  L  SLE +G+    +HG++ Q  R K++  FK G +  +VA+
Sbjct: 242 D-VTLAIIFCKTKRGVDELVASLETRGYQAEGLHGDLTQAQRNKVMRKFKNGQVDYLVAT 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI +V HV N+D+P   E Y+HRIGRTGRAGR GKA T +  E+ + +  IEK
Sbjct: 301 DVAARGLDIENVSHVINYDIPQDPEVYVHRIGRTGRAGRSGKAITFIVPEEYRQLRLIEK 360

Query: 363 LIEKKVDWLN 372
           +I  ++   N
Sbjct: 361 IIGARIARKN 370


>gi|307720922|ref|YP_003892062.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979015|gb|ADN09050.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 417

 Score =  317 bits (811), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 168/400 (42%), Positives = 251/400 (62%), Gaps = 8/400 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  ++ A+ + GY  PTPIQ K IP++L++ D+   AQTGTGKTA F LP+L +
Sbjct: 7   FNSLGLSAPILKAIKEQGYNTPTPIQQKAIPVILEKKDILAGAQTGTGKTAGFTLPLLEL 66

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L  EK   +    R LIL PTRELAAQV ++   YGK+      ++ GG+    Q   L 
Sbjct: 67  LSREKPTKQKHKIRALILTPTRELAAQVGESVALYGKHLPFKSTVIFGGVKINPQISNLR 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D++I TPGR+LDH ++  + +  +E L++DEADRMLDMGFI  I+ I +++P  RQT
Sbjct: 127 KGTDIVIATPGRLLDHISQKTIDLREVEYLILDEADRMLDMGFINDIKKILNIIPNQRQT 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT +D ++K+S  FL  PK IEV   ++++E ++      +   ++K  LL  L+ 
Sbjct: 187 LLFSATYSDAIKKLSNQFLNAPKLIEVARANTSSEIVKQAVY--HVDKTRKRELLTHLI- 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   +  ++F   K     L   LE  G +  AIHGN  Q +R K L++FK+G ++++V
Sbjct: 244 NEGKWQQVLVFTRTKHGANRLSGQLESDGITAVAIHGNKSQNARTKALADFKKGDVRVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + HV N+++PN +E+Y+HRIGRTGRAG  G+A +LV  ++ + +  I
Sbjct: 304 ATDIAARGIDIDQLPHVINYELPNVSEDYVHRIGRTGRAGNGGEAISLVCVDEDEFLQNI 363

Query: 361 EKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           EKLI+K +   WL G     +   E I++  +  AR N P
Sbjct: 364 EKLIKKDIPKVWLKGFKPDPSIKAEPINMGGNRGAR-NKP 402


>gi|239624536|ref|ZP_04667567.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239520922|gb|EEQ60788.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
           bacterium 1_7_47FAA]
          Length = 518

 Score =  317 bits (811), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 171/392 (43%), Positives = 246/392 (62%), Gaps = 12/392 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +L LSP ++ A+   GY+KP+PIQ + IP VL   D+ G AQTGTGKTA+F LP++
Sbjct: 1   MNFDELQLSPLLLKALDQKGYIKPSPIQEQAIPYVLNGQDLLGCAQTGTGKTAAFALPII 60

Query: 61  TIL---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L    K R + +  R LIL PTRELA Q+ +N E+YG    +  A++ GG+  + Q +
Sbjct: 61  QNLMERPKNRQKKKPVRALILTPTRELALQIHENIEEYGAGTPINSAVIFGGVSAKPQIQ 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+L+ TPGR+LD   + ++ ++ +EI V+DEADRMLDMGFI  ++ + +L+P  
Sbjct: 121 SLRRGIDILVATPGRLLDLIGQHEIDLSFVEIFVLDEADRMLDMGFIHDVKRVITLLPKK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM DE+Q ++   L NP ++EV   SST + IE      Y   + K  LL  
Sbjct: 181 RQTLLFSATMPDEIQALAAKLLHNPVKVEVTPVSSTVDLIETSLY--YVDKANKWPLLVH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +D + + ++F   K         L K G +  AIHG+  Q +R   LSNFK G ++
Sbjct: 239 LLEHED-VSSTLVFTRTKHGADRGAKYLNKSGITAAAIHGDKSQGARQTALSNFKSGRLR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++  V NFD+PN  E Y+HRIGRTGRAG  G+A +    E+  ++
Sbjct: 298 VLVATDIAARGIDIEELSCVINFDLPNVPETYVHRIGRTGRAGLGGRAISFSDIEEKAYV 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNP-PLEKIDIA 388
             IEKL  K +  + GD    +P P+E  +IA
Sbjct: 358 KDIEKLTGKTIQVI-GD----HPYPMEVFEIA 384


>gi|307545041|ref|YP_003897520.1| ATP-dependent RNA helicase RhlE [Halomonas elongata DSM 2581]
 gi|307217065|emb|CBV42335.1| ATP-dependent RNA helicase RhlE [Halomonas elongata DSM 2581]
          Length = 433

 Score =  317 bits (811), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 171/368 (46%), Positives = 235/368 (63%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL  +++ A+   GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LPML
Sbjct: 1   MSFSDLGLRAELLSAIEAQGYTEPTPIQRQAIPAVLEGGDLLASAQTGTGKTAGFTLPML 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G R   R  R L+L PTRELAAQV ++   YG++ +LT  ++ GG+  + Q   +
Sbjct: 61  QRLADGKRPAKRGVRALVLTPTRELAAQVGESVRDYGRHLSLTSHVIFGGVGQQPQVDAI 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD   +G + ++ +E LV+DEADRMLDMGFI  I+ +  L+P  RQ
Sbjct: 121 RPGLDILVATPGRLLDLQQQGHVDLSGVETLVLDEADRMLDMGFIHDIRKVLKLLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQL 238
            LLFSAT ++E+Q ++   L  P  IEV   ++TAET+E    A Y     KK  LL  L
Sbjct: 181 NLLFSATFSNEIQTLANQLLDRPTLIEVARRNTTAETVEQ---AVYRVDREKKRDLLAHL 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +QSQ   +  ++F   K     L   L K+     AIHGN  Q +R K LS FK G +Q+
Sbjct: 238 IQSQRWFQV-LVFTRTKHGANRLAEHLGKRDIPAMAIHGNKSQSARTKALSAFKSGDLQV 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI ++ HV NF++PN AE+Y+HRIGRTGRAG  G+A +LV  ++   + 
Sbjct: 297 LVATDIAARGLDIDELPHVVNFELPNVAEDYVHRIGRTGRAGNEGQAVSLVCVDEHGLLK 356

Query: 359 AIEKLIEK 366
            IEKLI++
Sbjct: 357 NIEKLIKR 364


>gi|194290299|ref|YP_002006206.1| dead box ATP-dependent RNA helicase with p-loop hydrolase domain
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224134|emb|CAQ70143.1| DEAD box ATP-dependent RNA helicase with P-loop hydrolase domain
           [Cupriavidus taiwanensis LMG 19424]
          Length = 511

 Score =  317 bits (811), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 169/390 (43%), Positives = 239/390 (61%), Gaps = 11/390 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F   GL  +++ A+ + GY  PTPIQ + IP+VL   DV G AQTGTGKTA F LP    
Sbjct: 32  FDSFGLDARILRALSEQGYTSPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQR 91

Query: 59  MLTILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +L +     +  R P R L+L PTRELA QV DN  +Y K+ +L   ++ GG+    Q  
Sbjct: 92  LLPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTD 151

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG ++L+ TPGR+LDH  +  + ++ +++LV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 152 ALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAQ 211

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E+++++ ++L+ P  IEV   +ST E +    V       K+ A++  
Sbjct: 212 RQTLLFSATFSPEIKRLASSYLKQPVTIEVARSNSTNENVRQA-VYQVEDGHKQAAVVHL 270

Query: 238 LLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L Q   Q   +  I+F N K     L   LE++G +  AIHG+  Q  RM+ L  FK GT
Sbjct: 271 LKQRAEQSQSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLDGFKSGT 330

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL-VAKEDI 354
           I  +VA+D+AARGLDIPD+  V NFD+P  AE+Y+HRIGRTGRAG  G A ++ V   D 
Sbjct: 331 IDALVATDVAARGLDIPDMPCVINFDLPYSAEDYVHRIGRTGRAGASGDALSIYVPGNDE 390

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
           + +  IEKLI++ +    G L   +P  E+
Sbjct: 391 RLLSDIEKLIKRSIP--RGKLEGFDPTGER 418


>gi|163855229|ref|YP_001629527.1| putative ATP-dependent RNA helicase [Bordetella petrii DSM 12804]
 gi|163258957|emb|CAP41256.1| putative ATP-dependent RNA helicase [Bordetella petrii]
          Length = 476

 Score =  316 bits (810), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 162/371 (43%), Positives = 235/371 (63%), Gaps = 8/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FAD GL P+++ +V D GY  PTPIQ + +P V+   DV G AQTGTGKTA+F LP+L  
Sbjct: 19  FADFGLHPQLLQSVADTGYTTPTPIQAQALPAVMAGRDVMGAAQTGTGKTAAFTLPILHR 78

Query: 61  --TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              +     +  R P RTLIL PTRELA QV ++ ++Y K+  L  A++ GG+    Q +
Sbjct: 79  LMPLANTSASPARHPVRTLILTPTRELADQVYESVKRYSKHTPLRSAVVFGGVDIGPQKE 138

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG ++L+ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF+P +  I  L+P  
Sbjct: 139 ALRRGCEILVATPGRLLDHVEQKTVNLSQVGILVLDEADRMLDMGFLPDLDRIVRLLPAQ 198

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT ++E++K+   +L  P  IEV   ++TA+T+    +A       K A +  
Sbjct: 199 RQGLLFSATFSNEIRKLGRTYLNQPVEIEVAARNATADTVSQ--IAYQMPSDAKRAAVVH 256

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++S+  +K  I+F N K     L   LE+ G    +IHG+  Q  RMK L  FK G ++
Sbjct: 257 LVKSRG-LKQVIVFSNTKIGTARLARELERDGVRAESIHGDKSQADRMKALDAFKAGELE 315

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  V  V N+D+P+ AE+Y+HRIGRTGRAG  G+A  L   ++ +++
Sbjct: 316 VLVATDVAARGLDVAGVPCVINYDLPHNAEDYVHRIGRTGRAGASGEAIALFTADETRYL 375

Query: 358 DAIEKLIEKKV 368
             IEKL ++ V
Sbjct: 376 QDIEKLTKRPV 386


>gi|170759986|ref|YP_001785987.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406975|gb|ACA55386.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 425

 Score =  316 bits (810), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 166/371 (44%), Positives = 241/371 (64%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   +  A+ + GY K TPIQ K+IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGRDLVGCAQTGTGKTAAFAVPVL 60

Query: 61  TILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L K +   + PRT   L+L PTRELA Q+ ++FE YGK  NL  A++ GG+    Q K
Sbjct: 61  QNLSKDKKVNKDPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+LI TPGR+LD FN+  + + NIE  V+DEADRMLDMG I  ++ I S +P  
Sbjct: 121 ALREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKA 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  E+ K+ ++ +++P R+EV   SST +TI       + +  +K ALL+ 
Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVY--HVRKKQKRALLKH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ + ++++ ++F   K+    +   L + G    AIHGN  Q +R + L+NFKEG I+
Sbjct: 239 LLKDK-SIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HVFN+++P+  E Y+HRIGRTGRAG  G A +    E+ K +
Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDIPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357

Query: 358 DAIEKLIEKKV 368
            AIEKLI K++
Sbjct: 358 KAIEKLINKEI 368


>gi|134093720|ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
 gi|133737623|emb|CAL60666.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
          Length = 502

 Score =  316 bits (810), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 177/439 (40%), Positives = 260/439 (59%), Gaps = 18/439 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL+P+++ A+ D GYV PTPIQ + IP+VL+  DV G AQTGTGKTA F LP++ +
Sbjct: 25  FQDFGLAPEILKALNDQGYVHPTPIQAEAIPVVLKGMDVMGAAQTGTGKTAGFSLPIIQL 84

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QVA N + Y ++  L   ++ GG+    Q  
Sbjct: 85  LMAHANSSASPARHPVRALILTPTRELADQVAANVKAYSRHTPLRSLVVFGGMDMTPQTA 144

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G +++I TPGR+LDH  +  + ++  +ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 145 ALRGGVEIVIATPGRLLDHVQQKTINLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQ 204

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ L+FSAT + E++K++  FL++P  IEV   ++TAE +    +    + +K+ A+   
Sbjct: 205 RQNLMFSATFSPEIKKLAATFLKDPVTIEVARSNATAENVTQ-IIYKVEEEAKRDAV--S 261

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +  +K  I+F N K     L   LE +G    AIHG+  Q  RM+ L  FK GTI+
Sbjct: 262 FIIRERGLKQVIVFSNTKIGASRLARQLESEGVKASAIHGDKSQSERMQALEQFKNGTIE 321

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L + +D + +
Sbjct: 322 VLVATDVAARGLDIAELPCVINFDLPYNAEDYVHRIGRTGRAGASGDAISLFSDKDARLL 381

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH------ARKNNPIPQKSTGFDRRKK 411
             IEK+I+ K  ++  +L    P   +     H+        RK+   P+ S   +R   
Sbjct: 382 VDIEKMIKHK--FVPAELIGFTPSSGRTAERSHDRRAHERSPRKDESAPRPSRAPERSPG 439

Query: 412 NYS--SQKSHIPLKESEKI 428
             S  S+ ++      EKI
Sbjct: 440 AASNGSRSAYAAAPRKEKI 458


>gi|162451805|ref|YP_001614172.1| hypothetical protein sce3532 [Sorangium cellulosum 'So ce 56']
 gi|161162387|emb|CAN93692.1| deaD2 [Sorangium cellulosum 'So ce 56']
          Length = 478

 Score =  316 bits (810), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 165/372 (44%), Positives = 240/372 (64%), Gaps = 4/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADL L   ++ A+   GY  PTPIQ + IP +L+ +D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MQFADLKLIEPLLRAIEAEGYSAPTPIQQQAIPPILEGNDLLGCAQTGTGKTAAFALPIL 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L + G  R    R L+L PTRELAAQVA++F  YGKN  L  A++ GG+    Q + L
Sbjct: 61  QRLAQSGGPRQGGLRVLVLTPTRELAAQVAESFTTYGKNLGLRTAVVFGGVGQRPQMEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DVL+ TPGR+LD  ++G      ++ LV+DEADRMLDMGFI  I+ + +++P  RQ
Sbjct: 121 RRGVDVLVATPGRLLDLCSQGIAPFGRLDTLVLDEADRMLDMGFIHDIRRVLAMLPERRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  ++ K++ + L++P R+EV   ++TAE I+   V  + + S K A+L+ +L
Sbjct: 181 TLLFSATMPPDILKLANSILRSPVRVEVARIATTAENIDQRVV--FVERSDKRAMLEHVL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +    ++  I+F   K     +   L +      AIHGN  Q +R + L++FK+GT  ++
Sbjct: 239 KD-PALRRAIVFTRTKHGANRVVQQLSRARIEAVAIHGNKSQGARERALASFKQGTTSVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI D+ HV N+D+PN  E+Y+HRIGRT RAG  G A +    E+  ++  
Sbjct: 298 VATDIAARGIDIDDISHVINYDLPNIPESYVHRIGRTARAGASGVALSFCDSEERAYLAD 357

Query: 360 IEKLIEKKVDWL 371
           IE+LI+K++  L
Sbjct: 358 IERLIQKRLPLL 369


>gi|114331652|ref|YP_747874.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas
           eutropha C91]
 gi|114308666|gb|ABI59909.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91]
          Length = 488

 Score =  316 bits (810), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 160/372 (43%), Positives = 235/372 (63%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS +++ AV+D GY+ PTPIQ + IP +L   DV   AQTGTGKTA F LP+L  
Sbjct: 7   FEQLDLSSEILRAVIDEGYINPTPIQAQVIPPILAGKDVMASAQTGTGKTAGFTLPLLHH 66

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L+   +    P     R LI+ PTRELA Q+ ++  KYGK   L   ++ GG+  E Q  
Sbjct: 67  LQAHASSSTSPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRTTVVFGGVNIEPQIT 126

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G ++L+ TPGR+LD      +  +  EILV+DEADRMLDMGF+P I+ + +L+P  
Sbjct: 127 ELRNGVEILVATPGRLLDLVEHKAVNFSKTEILVLDEADRMLDMGFLPDIKKVMALLPSQ 186

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+L+FSAT +DE++K+++  L++P RIEV   ++  E+I H  V    +   K ALL  
Sbjct: 187 RQSLMFSATFSDEIRKLADGLLKHPVRIEVAAQNTINESISH--VVHRIKPESKFALLLH 244

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++ QD +K  ++F   K     L   L        AIHG+ +Q+ R + LS FK G +Q
Sbjct: 245 LVKQQD-LKQALVFVKTKHGASQLAQMLSHHKILALAIHGDKNQQQRTQALSEFKHGDVQ 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  + HV N+++P   E+Y+HRIGRTGRAG  GKA +LV++ + + +
Sbjct: 304 ILVATDVAARGIDIEKLSHVVNYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHETELL 363

Query: 358 DAIEKLIEKKVD 369
            +IEKL+  K++
Sbjct: 364 TSIEKLLNTKLE 375


>gi|325293690|ref|YP_004279554.1| dead-box ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
 gi|325061543|gb|ADY65234.1| dead-box ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
          Length = 500

 Score =  316 bits (810), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 164/374 (43%), Positives = 235/374 (62%), Gaps = 4/374 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGLS K+V +V   GY  PTPIQ K IPL+L+  D+ G+AQTGTGKTA+F LP++ +
Sbjct: 12  FSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIEM 71

Query: 63  LEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L K   R   R  RTLIL PTREL  Q+ +N   + K   L +  ++GG     Q  +LE
Sbjct: 72  LMKQADRPANRTTRTLILAPTRELVNQIGENLRSFVKKTPLRINQVVGGASINKQQLQLE 131

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVL+ TPGR+LD   R  + ++ +  LV+DEAD+MLD+GFI  ++ I+ +VP  RQT
Sbjct: 132 KGTDVLVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISKMVPAKRQT 191

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + +++ NFL +P ++EV  P   A+ +E  +V   A  + K  LL++ L 
Sbjct: 192 LLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQ-YVHFVAGKNDKTDLLKKSLN 250

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ I+F   K     L   LE  GF V +IHGN  Q  R + L  FK+G I+++V
Sbjct: 251 ENPDGRS-IVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVLV 309

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DIP V HVFN+D+P   + Y+HRIGRT RAGR G A    A ++ + +  I
Sbjct: 310 ATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHDI 369

Query: 361 EKLIEKKVDWLNGD 374
           EKL++  +   +G+
Sbjct: 370 EKLMKIDIPVASGE 383


>gi|157962744|ref|YP_001502778.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157847744|gb|ABV88243.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 468

 Score =  316 bits (810), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 167/372 (44%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V AV + GY  PTPIQ KTIP++L + ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSTPIVKAVTEQGYTSPTPIQAKTIPVILSQRNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L K    R +  R LIL PTRELA QV DN  +YGK+ +LT   + GG+  + Q ++L
Sbjct: 61  EMLSKSETQRKKRIRALILTPTRELAVQVEDNISQYGKHLDLTSMAMYGGVDSKPQRERL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD + +  +  + +E LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IQGVDILVATPGRLLDMYTQRAIHFDELEFLVLDEADRMLDMGFIEDINKIIEKLPVDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT++ ++++++   +  P  I V   +     IE   V       KK ALL  L+
Sbjct: 181 SLLFSATLSRQVKELARATITRPIEISVTHNTDNKPKIEQWLVT--VDKDKKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q ++  +  +IF   K+    L   LEK+G +   IHG   Q  R +IL++FK G I L+
Sbjct: 239 Q-ENNWQQALIFIETKQGAAKLVSQLEKRGITAECIHGGRSQEIREQILADFKSGKIGLL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ +AARGLDI ++  V N+D+P  A+ YIHRIGRTGRAG +G+A  LV+K+D K++  
Sbjct: 298 IATGIAARGLDIDELPLVINYDLPYPADEYIHRIGRTGRAGANGEAVALVSKDDFKNLCM 357

Query: 360 IEK----LIEKK 367
           IE     LIE++
Sbjct: 358 IETRLGHLIERR 369


>gi|319795121|ref|YP_004156761.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS]
 gi|315597584|gb|ADU38650.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
          Length = 496

 Score =  316 bits (810), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 167/373 (44%), Positives = 237/373 (63%), Gaps = 9/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L+  +  AV + GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L  
Sbjct: 5   FSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLPLLQR 64

Query: 63  LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + K      +  R P R L+L PTRELA QVA   + Y K  NL   ++ GGI  + Q  
Sbjct: 65  MLKHENASTSPARHPVRALVLLPTRELADQVAQQVKLYAKYTNLRSTVVFGGIDMKPQTL 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P  
Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R TLLFSAT + E+++++ ++LQNP  IEV  P+ TA T+E  F +      ++   L+Q
Sbjct: 185 RTTLLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQHFYSVSDDDKRRA--LKQ 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++ Q  +    +F N K     L  SLE+ G    A+HG+  Q  R+K L++FK G + 
Sbjct: 243 IVK-QRGITQAFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLKALASFKAGEVD 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKH 356
           L+V +D+AARGLDI DV  VFNFD+P  AE+Y+HRIGRTGRAG  G A +  +   D + 
Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFASGGNDARL 361

Query: 357 IDAIEKLIEKKVD 369
           +  IEKLI+KK++
Sbjct: 362 VADIEKLIKKKIE 374


>gi|88858341|ref|ZP_01132983.1| putative ATP-dependent RNA helicase (rhlE-like); DEAD-box protein
           family protein [Pseudoalteromonas tunicata D2]
 gi|88819958|gb|EAR29771.1| putative ATP-dependent RNA helicase (rhlE-like); DEAD-box protein
           family protein [Pseudoalteromonas tunicata D2]
          Length = 413

 Score =  316 bits (810), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 180/420 (42%), Positives = 254/420 (60%), Gaps = 17/420 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+ ++V A+ + GY  PTPIQ   I  +LQ  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MGFAALGLNQQLVQALTECGYDTPTPIQTAAIGEILQGKDVMAGAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R    RTL+L PTRELA QV  +FEKYG++  LT AL  GG+    Q K ++
Sbjct: 61  QRLAEQPERKGQLRTLVLTPTRELAQQVFASFEKYGQHSELTAALAYGGVSIGEQIKAIK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+++ TPGR+LDH  +G + ++N++ LV DEADRMLDMGFI  I NI   +P  RQT
Sbjct: 121 AGVDIMVATPGRLLDHLVKGTVNLSNVQYLVFDEADRMLDMGFIDEINNILRRLPKERQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D + K+S+  L  P  IEVN  +  A  +E    A  A   +K  L+  L+ 
Sbjct: 181 LLFSATFDDAIFKLSKKLLNQPVLIEVNQRNQAASEVEQIVYAVDA--DRKRELISHLIG 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++  +  ++F   K+    L   + K G    AIHG+  Q +R K LS FKEG  +++V
Sbjct: 239 AKN-WQQVLVFTRTKQTADELAKEMCKDGLKTQAIHGDKSQGARDKALSEFKEGKTRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + +V N+++P  AE+YIHRIGRTGRAG  G A +L++ ++   ++ I
Sbjct: 298 ATDVAARGIDIQQLQYVINYELPYIAEDYIHRIGRTGRAGEKGLAISLLSIDENWLLEEI 357

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           E +++K++   WL G      P L K  + +    RKN  + +K     R KK  S QK+
Sbjct: 358 EAVLDKRLPQQWLPG----YEPDLTKEPVDK----RKNGKVAEKR----RAKKRLSGQKT 405


>gi|56460599|ref|YP_155880.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
 gi|56179609|gb|AAV82331.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 372

 Score =  316 bits (809), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 162/370 (43%), Positives = 231/370 (62%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+DL LSP+ + A+   GY + TPIQ + IPLVL   DV   AQTGTGKT +F  P+L
Sbjct: 1   MNFSDLALSPETLTALSRQGYSESTPIQAEAIPLVLAGKDVMAAAQTGTGKTTAFTAPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L+   RA+    R LIL PTRELAAQV +N         L  A+  GG+    Q  KL
Sbjct: 61  ELLKSNERAKANTARVLILTPTRELAAQVGENVANLSAGLPLNYAVAFGGVKINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD + +  +    +E+LV+DEADRMLDMGFI  I+NI  L+P  RQ
Sbjct: 121 RKGVDILVATPGRLLDLYKQNAVRFPKLEVLVLDEADRMLDMGFIHDIKNIIKLLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT +D+++ +++  L++P  I V  P++TAE IE      Y     +   L   L
Sbjct: 181 TLLFSATFSDDIRALAKGLLKSPVEISVALPNATAEPIEQTL---YEVQKSQKLGLLLKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   ++F   K+    L   L+K GFS  AIH    Q +R K L++FK   +Q++
Sbjct: 238 LKSLDLPQVLVFSRTKQGANRLVKQLDKAGFSAAAIHSAKSQGARTKALADFKSAKVQML 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RG+DI  + +V N+D+P+ AE+YIHRIGRTGRAG+ G A +LV  ED+  + A
Sbjct: 298 IATDIASRGIDIEKLPYVINYDLPHVAEDYIHRIGRTGRAGQTGHAISLVTDEDVAALKA 357

Query: 360 IEKLIEKKVD 369
           IE+LI + ++
Sbjct: 358 IEELIGETIE 367


>gi|119899811|ref|YP_935024.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
 gi|119672224|emb|CAL96138.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
          Length = 537

 Score =  316 bits (809), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 167/372 (44%), Positives = 233/372 (62%), Gaps = 6/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LGL+  ++ A+ D GY  PTPIQ K IPLVL   D+   AQTGTGKTA F LP+L
Sbjct: 5   LTFASLGLAEPLLRAISDTGYTTPTPIQAKAIPLVLAGGDLLAAAQTGTGKTAGFTLPVL 64

Query: 61  TILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L            PR LIL PTRELAAQV ++ + YGK+  LT  ++ GG+    Q  
Sbjct: 65  HKLAATHVHPHPAGKPRCLILTPTRELAAQVEESVQTYGKHLALTSMVMFGGVNINPQIS 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++  D+L+ TPGR+LDH  +  L ++ +EILV+DEADRMLDMGFI  I+ + +L+P  
Sbjct: 125 ALKKRVDILVATPGRLLDHVGQKTLDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E +E   V    Q  K+  LL  
Sbjct: 185 RQNLLFSATFSDEIRDLANGLLHNPGCVEVAPRNTASERVEQT-VYMIGQKQKR-ELLAW 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++ +   +  ++F   K     L   L K      AIHGN  Q +R + LS FK+G++ 
Sbjct: 243 LIKEKQWFQ-ALVFTRTKHGANKLAEYLTKHDIPAAAIHGNKSQSARTRALSQFKDGSLP 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV  E++K +
Sbjct: 302 VLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGADGNAISLVDGEEVKLL 361

Query: 358 DAIEKLIEKKVD 369
            AIE+LI +K+D
Sbjct: 362 TAIERLIRRKID 373


>gi|121604151|ref|YP_981480.1| DEAD/DEAH box helicase domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120593120|gb|ABM36559.1| DEAD/DEAH box helicase domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 571

 Score =  316 bits (809), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 163/374 (43%), Positives = 238/374 (63%), Gaps = 8/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AVL+ GY  PTPIQ + IP VL   D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MKFEELNLAPAILKAVLEQGYDTPTPIQAQAIPAVLAGGDLLGGAQTGTGKTAAFTLPLL 60

Query: 61  TILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L        R  V   R LI+ PTRELAAQV ++   YGK  +LT  ++ GG+   AQ
Sbjct: 61  QRLSTEPRLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYLDLTSMVMFGGVGMGAQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            +KL RG D+L+ TPGR+LDH ++G L ++ ++IL++DEADRMLDMGFI  I+ + +LVP
Sbjct: 121 IEKLRRGVDILVATPGRLLDHASQGTLDLSQVQILILDEADRMLDMGFIHDIKKVLALVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +QTLLFSAT +DE+++++   L+NP  I+V   ++T + I           SKK ALL
Sbjct: 181 KQKQTLLFSATFSDEIRELANGLLRNPLSIQVTPRNTTVQRITQTIHPV--GRSKKKALL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             ++   +     ++F   K    N+   L K G    A+HGN  Q +R + L  FK G 
Sbjct: 239 THIINEHN-WSQVLVFTRTKFGANNVAEHLTKAGIPAMALHGNKSQTARTQALQGFKNGD 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ +VA+D+AARG+DI ++ HV N+++PN +E+Y+HRIGRTGRAG  G+A +LV  ++  
Sbjct: 298 IRALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGQAVSLVCLDEEG 357

Query: 356 HIDAIEKLIEKKVD 369
            +  IE+  ++ ++
Sbjct: 358 FMQDIERFTKQNIE 371


>gi|168183325|ref|ZP_02617989.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Bf]
 gi|182673470|gb|EDT85431.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Bf]
          Length = 425

 Score =  316 bits (809), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 166/371 (44%), Positives = 241/371 (64%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   +  A+ + GY K TPIQ K+IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVL 60

Query: 61  TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L K +   + PR    L+L PTRELA Q+A++FE YGK  NL  A++ GG+    Q K
Sbjct: 61  QNLSKDKKANKNPRPIRALVLAPTRELAIQIAESFECYGKYINLKSAVIFGGVSQNPQTK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+LI TPGR+LD FN+  + + NIE  V+DEADRMLDMG I  ++ I S +P  
Sbjct: 121 VLREGVDILIATPGRMLDLFNQKYIDLRNIEFFVLDEADRMLDMGMIHDVKKIISKLPKI 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  E+ K+ ++ +++P R+EV   SST +TI       + +  +K ALL+ 
Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVY--HVRKKQKRALLKH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ + ++++ ++F   K+    +   L + G    AIHGN  Q +R + L+NFKEG I+
Sbjct: 239 LLKDK-SIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HVFN+++P+  E Y+HRIGRTGRAG  G A +    E+ K +
Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357

Query: 358 DAIEKLIEKKV 368
            AIEKLI K++
Sbjct: 358 KAIEKLINKEI 368


>gi|145588789|ref|YP_001155386.1| DEAD/DEAH box helicase domain-containing protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047195|gb|ABP33822.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 473

 Score =  316 bits (809), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 166/377 (44%), Positives = 242/377 (64%), Gaps = 10/377 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FAD GL PK+  AV + GY  PTPIQ ++IP VL   D+ G AQTGTGKTA+FVLP++
Sbjct: 28  ITFADFGLDPKIQKAVAEQGYSIPTPIQAQSIPHVLAGSDLMGAAQTGTGKTAAFVLPII 87

Query: 61  TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             + +  +    P     R L+L PTRELA QVA+N   Y K+ +L  A++ GG+  + Q
Sbjct: 88  QQILRHASNSASPARHPIRALVLTPTRELAVQVAENAASYSKHTDLRAAVVYGGVDMKEQ 147

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G ++LI TPGR+LDH       ++ +EILV+DEADRMLDMGF+P +Q I  L+P
Sbjct: 148 VAILRNGVEILIATPGRLLDHIGSKVANLSQVEILVLDEADRMLDMGFLPDLQRIIDLIP 207

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT + E++K+++++L+ P  +EV   ++ A+T++   V   +   K+ A++
Sbjct: 208 AQRQTLLFSATFSPEIKKLAQSYLRTPVTVEVARQNAAADTVKQV-VHMVSSGDKQRAIV 266

Query: 236 QQLLQSQDTM---KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            ++L+++  +   +  IIF N +     L  +LE+ G    AIHG+  Q  R   L  FK
Sbjct: 267 -KVLEARTRLGLSRQCIIFTNSRLGCAKLARALERDGIKAGAIHGDKSQGERTLTLDAFK 325

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G I+ +VA+D+AARGLDIPD+  V N ++P  AE++IHRIGRTGRAG  G A  LV   
Sbjct: 326 SGAIEALVATDVAARGLDIPDMPCVINHELPYNAEDFIHRIGRTGRAGSKGDAIALVDAS 385

Query: 353 DIKHIDAIEKLIEKKVD 369
           + + +D IEKL+++K+D
Sbjct: 386 EKRLLDDIEKLMKRKLD 402


>gi|329905919|ref|ZP_08274297.1| ATP-dependent RNA helicase RhlE [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547410|gb|EGF32236.1| ATP-dependent RNA helicase RhlE [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 446

 Score =  316 bits (809), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 169/374 (45%), Positives = 234/374 (62%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFAQLGLSADIVRAVTEHGYTIPTPIQAQAIPAVLLGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L    +        R  R LIL PTRELAAQV ++   YGK   LT  ++ GG+    
Sbjct: 61  HRLSTSTSAPTTNTATRPIRALILAPTRELAAQVEESVRTYGKYLKLTSTVIFGGVGINP 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q K L+ G D+L+ TPGR+LDH  +G + ++ +EIL++DEADRMLDMGFI  I+ + +++
Sbjct: 121 QIKMLKHGVDILVATPGRLLDHMGQGTVNLSQVEILILDEADRMLDMGFIKDIKKVLAVL 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT ++E++ +++  L  PK IEV   +ST E I            KK  L
Sbjct: 181 PKKRQNLLFSATFSEEIKTLADGLLNAPKMIEVARRNSTVEIIAQKIYPV--DRDKKHPL 238

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L+++ +     ++F   K     L   LEK G S  AIHGN  Q +R K L+ FK+G
Sbjct: 239 LAHLIKTNN-WPQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTKALAEFKDG 297

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            +Q++VA+D+AARG+DI  + HV N+D+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ 
Sbjct: 298 KLQVLVATDIAARGIDIDQLPHVVNYDLPNIPEDYVHRIGRTGRAGATGEAVSLVCVDEH 357

Query: 355 KHIDAIEKLIEKKV 368
           + +  IEKLI++++
Sbjct: 358 EMLRDIEKLIKREL 371


>gi|226947893|ref|YP_002802984.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A2 str.
           Kyoto]
 gi|226840806|gb|ACO83472.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A2 str.
           Kyoto]
          Length = 425

 Score =  316 bits (809), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 165/371 (44%), Positives = 241/371 (64%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   +  A+ + GY K TPIQ K+IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPIL 60

Query: 61  TILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L K +   + PRT   L+L PTRELA Q+ ++FE YGK  NL  A++ GG+    Q K
Sbjct: 61  QNLSKDKKVNKNPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+LI TPGR+LD FN+  + + NIE  V+DEADRMLDMG I  ++ I S +P  
Sbjct: 121 ALREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPRG 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  E+ K+ ++ +++P R+EV   SST +TI       + +  +K +LL+ 
Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVY--HVRKKQKRSLLKH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ + ++++ ++F   K+    +   L + G    AIHGN  Q +R + L+NFKEG I+
Sbjct: 239 LLKDE-SIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HVFN+++P+  E Y+HRIGRTGRAG  G A +    E+ K +
Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357

Query: 358 DAIEKLIEKKV 368
            AIEKLI K++
Sbjct: 358 KAIEKLIHKEI 368


>gi|325284979|ref|YP_004260769.1| DEAD/DEAH box helicase domain-containing protein [Cellulophaga
           lytica DSM 7489]
 gi|324320433|gb|ADY27898.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
           7489]
          Length = 429

 Score =  316 bits (809), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 166/365 (45%), Positives = 240/365 (65%), Gaps = 4/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS  ++ A+   GY  P+PIQ K IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MTFKNLGLSNNLLKAIDKKGYTTPSPIQEKAIPPVLEGKDVLASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L + +A R R  R LIL PTRELAAQ+  N ++Y +  +L  A++ GG+  + Q   L
Sbjct: 61  HLLSEQKALRHRPVRALILTPTRELAAQIFANVKEYSEFLDLRSAVIFGGVNQKPQIANL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG DVL+ TPGR+LD  N+  L ++ +EI V+DEADRMLDMGF+  I+ +  L+P  RQ
Sbjct: 121 KRGMDVLVATPGRLLDLHNQRFLSLDKVEIFVLDEADRMLDMGFLRDIERVMKLIPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT + +++K++   L NP ++E  TP +TA  +    V   A+  KK  L+ +L+
Sbjct: 181 NLMFSATFSKDIKKLAHGILNNPIQVEA-TPENTAVEVIKQKVYRVAK-GKKTGLIIKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S    +  ++F   K    NLC  +  +G S  AIHGN  Q +R K L  FK+GT++++
Sbjct: 239 -SDGNWQQVLVFTRTKHGANNLCKKMSSKGISAAAIHGNKSQGARTKALDGFKKGTLRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + HV N+++PN +E+Y+HRIGRTGRAG  G+A +LV+ ++  ++  
Sbjct: 298 VATDIAARGLDIPLLPHVINYEIPNISEDYVHRIGRTGRAGASGEAVSLVSADETTYLKD 357

Query: 360 IEKLI 364
           I+KLI
Sbjct: 358 IQKLI 362


>gi|222054409|ref|YP_002536771.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32]
 gi|221563698|gb|ACM19670.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32]
          Length = 451

 Score =  316 bits (809), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 161/364 (44%), Positives = 229/364 (62%), Gaps = 5/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L LSP ++ A+   GY  PTPIQ + IPL L+  D+   AQTGTGKTA+F LP L
Sbjct: 1   MSFESLQLSPLILKAIAACGYTTPTPIQEQAIPLALEGKDLIASAQTGTGKTAAFTLPAL 60

Query: 61  TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  +     R PR L+L PTRELA QV D    YGK   +T   ++GG+P+  Q + L
Sbjct: 61  ERLSVRSPIPGRGPRILVLTPTRELANQVTDAVRNYGKFIRVTSGAILGGMPYREQLQLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R  D+++ TPGR++DH +RG++ ++ +E+L++DEADRMLDMGF   +  I +  P  RQ
Sbjct: 121 SRPVDLIVATPGRLIDHLDRGRINLSRLELLILDEADRMLDMGFSEDVDRIAAAAPANRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQL 238
           TLLF+ATM D + K+++  L++P RIE+     T E IE    VA   Q+  K  +LQ L
Sbjct: 181 TLLFTATMDDVMAKLAQRLLKDPVRIEIAGKKMTHEQIEQRLHVADNLQH--KTRMLQHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +  T+   IIF   K++   L   L  QG +  A+HG++ Q +R K + N + G I+L
Sbjct: 239 I-ADGTVTKAIIFSATKRDADLLARDLHAQGHAAAALHGDMSQNARNKTIHNMRRGKIRL 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  + HV NFD+P  AE+Y+HRIGRTGRAG  G A +  +  D+ ++D
Sbjct: 298 LVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGATGIAISFASLNDLNYLD 357

Query: 359 AIEK 362
            IE+
Sbjct: 358 RIER 361


>gi|30249980|ref|NP_842050.1| rhlE; ATP-dependent RNA helicase RhlE [Nitrosomonas europaea ATCC
           19718]
 gi|30139087|emb|CAD85951.1| rhlE; ATP-dependent RNA helicase RhlE [Nitrosomonas europaea ATCC
           19718]
          Length = 498

 Score =  316 bits (809), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 163/374 (43%), Positives = 240/374 (64%), Gaps = 8/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LGLS +++ AV D GYV PTPIQ + IP +L   DV   AQTGTGKTA F LP+L
Sbjct: 5   VTFAQLGLSSEILHAVNDEGYVNPTPIQAQVIPSILAGKDVMASAQTGTGKTAGFTLPLL 64

Query: 61  TILEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L+       +  R P R LI+ PTRELA Q+ ++  KYGK   L  A++ GGI  E Q
Sbjct: 65  YRLQAYANTSVSPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRTAVVFGGINIEPQ 124

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G ++L+ TPGR+LD   +  +  +  EILV+DEADRMLDMGF+P I+ + +L+ 
Sbjct: 125 IAALQAGVEILVATPGRLLDLVEQKAVNFSKTEILVLDEADRMLDMGFLPDIKRVMALLS 184

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ+L+FSAT + E++K++++ L+ P RIE    ++  E+I H  V  + +   K ALL
Sbjct: 185 PQRQSLMFSATFSGEIRKLADSLLKQPVRIEAAVQNTVNESISH--VIHWVKPDSKFALL 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++ Q+ +K  +IF   K    +L   L +   S  AIHG+ +Q+ R + L+ FK G 
Sbjct: 243 LHLIRQQN-LKQALIFVKTKHGASHLAQMLSRHEISAVAIHGDRNQQQRTQALAEFKHGD 301

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARG+DI  + HV N+++P   E+Y+HRIGRTGRAG  GKA +LV++ + +
Sbjct: 302 VQILVATDVAARGIDIEKLSHVINYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHEKE 361

Query: 356 HIDAIEKLIEKKVD 369
            +  IEKL+  K++
Sbjct: 362 LLANIEKLLNAKLE 375


>gi|258541735|ref|YP_003187168.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256632813|dbj|BAH98788.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256635870|dbj|BAI01839.1| RNA helicase [Acetobacter pasteurianus IFO 3283-03]
 gi|256638925|dbj|BAI04887.1| RNA helicase [Acetobacter pasteurianus IFO 3283-07]
 gi|256641979|dbj|BAI07934.1| RNA helicase [Acetobacter pasteurianus IFO 3283-22]
 gi|256645034|dbj|BAI10982.1| RNA helicase [Acetobacter pasteurianus IFO 3283-26]
 gi|256648089|dbj|BAI14030.1| RNA helicase [Acetobacter pasteurianus IFO 3283-32]
 gi|256651142|dbj|BAI17076.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654133|dbj|BAI20060.1| RNA helicase [Acetobacter pasteurianus IFO 3283-12]
          Length = 445

 Score =  316 bits (809), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 162/390 (41%), Positives = 241/390 (61%), Gaps = 12/390 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+DL L+P ++ A+ + GY  PTPIQ ++IP +LQ  D+ G+AQTGTGKTASF LP+L  
Sbjct: 4   FSDLALAPPLLKALAEQGYDTPTPIQERSIPYLLQGRDLLGLAQTGTGKTASFALPILEH 63

Query: 62  ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +++  RA   + PR L+L PTREL AQ++D+F+ Y ++   T A++ GG+    Q + + 
Sbjct: 64  LIKNPRANTPKQPRVLVLAPTRELVAQISDSFKAYARHMKFTQAVVFGGVGQGRQVEAMR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVL+  PGR+LD   +G + ++ +EILV+DEADRMLDMGF+  I+ I + VP  RQT
Sbjct: 124 RGVDVLVAAPGRLLDLMGQGFIDLSGLEILVLDEADRMLDMGFVRDIRRIMTFVPEQRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ ++ + L +P R+EV  PSST + I+   +       K+ ALL  +  
Sbjct: 184 LLFSATMPRSIEDLAASLLNDPARVEVAPPSSTVDRIQQAVMFVNGAGDKRDALLNMV-- 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   ++F   K     +   L K      AIHGN  Q +R + +  F+ G+++++V
Sbjct: 242 ESPKVSRAVVFTLMKHEANKVAEFLNKNNVVAEAIHGNKSQGARERAMKGFRSGSVKVLV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV HVFN+D+PN  E+Y+HRIGRT RAGR G A +    E    +  I
Sbjct: 302 ATDIAARGIDVDDVSHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSFCDAEQRAWLRDI 361

Query: 361 EKLIEKKV------DW--LNGDLSSLNPPL 382
           E+ I K V       W     + S++ PP+
Sbjct: 362 ERTIGKTVPVVRDHPWHSAEAEASTMRPPV 391


>gi|152988184|ref|YP_001345923.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
 gi|150963342|gb|ABR85367.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
          Length = 635

 Score =  315 bits (808), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 181/454 (39%), Positives = 262/454 (57%), Gaps = 17/454 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L        + R   R  R L+L PTRELAAQV D+F+ Y ++  L    + GG+   
Sbjct: 61  ERLFPAGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L +G DVL+  PGR+LD   + K+ ++++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQIQALAKGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A   +K A
Sbjct: 181 LPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPA--PQKRA 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L K G    AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLV-TVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             ++++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            K + AIEK+  +++   +GD    +P     ++AQ     +  P  Q     +RR +  
Sbjct: 358 EKLLKAIEKMTRQRIP--DGDPQGFDPEAVLPEVAQPEP--REAPQKQPRRDKERRSRER 413

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             +++  P   +E  +   QD  E  A     RG
Sbjct: 414 KPKEAQAP---AENAAVAGQDGAEKPAGKRRRRG 444


>gi|74317751|ref|YP_315491.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
 gi|74057246|gb|AAZ97686.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 477

 Score =  315 bits (808), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 166/370 (44%), Positives = 235/370 (63%), Gaps = 8/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L+  ++ A+ DAGY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L  
Sbjct: 7   FASLALAEPILRAIADAGYTAPTPIQAQAIPHVLAGGDLLAAAQTGTGKTAGFTLPILHQ 66

Query: 63  LEKGRARVR----MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L   RA V      PR LIL PTRELAAQV ++ + YGK  +LT  ++ GG+    Q K 
Sbjct: 67  LST-RAAVAPKPGRPRCLILVPTRELAAQVEESVKTYGKYLSLTSMVMFGGVNINPQFKA 125

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+   D+L+ TPGR+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ + +++P  R
Sbjct: 126 LKARVDILVATPGRLLDHVAQKTVDLSGVEILVLDEADRMLDMGFIRDIRRVLAVLPKQR 185

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +DE++ ++   L NPK +EV   ++TAE +E          + K  LL  L
Sbjct: 186 QNLLFSATFSDEIRTLANGLLNNPKSVEVARRNTTAEVVEQSM--HRVPQAHKRDLLAHL 243

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++  D  +  ++F   K     L   L K G +  AIHGN  Q +R K L++FK+G+++ 
Sbjct: 244 IKHHD-WQQVLVFTRTKHGANKLAEKLNKDGITAAAIHGNKSQSARTKALASFKDGSVRA 302

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV  E++ ++ 
Sbjct: 303 LVATDIAARGIDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGSALSLVDDEEMGYLR 362

Query: 359 AIEKLIEKKV 368
            IEKLI++ +
Sbjct: 363 DIEKLIKRAI 372


>gi|167624931|ref|YP_001675225.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167354953|gb|ABZ77566.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 436

 Score =  315 bits (808), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 168/372 (45%), Positives = 235/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V AV + GY  PTPIQ KTIP++L + ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSTPIVKAVTEQGYTSPTPIQAKTIPVILSQRNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +    R +  R LIL PTRELA QV DN  +YGK+  LT   + GG+  + Q ++L
Sbjct: 61  EMLSRSETQRKKRIRALILTPTRELAVQVEDNISQYGKHLALTSMAMYGGVDSKPQRERL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + +EILV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDELEILVLDEADRMLDMGFIEDINKIMEKLPVDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT++ ++++++   +  P  I V   +     IE   V       KK ALL  L+
Sbjct: 181 TLLFSATLSRQVKELARATIVRPIEISVTHNTDNKPKIEQWLVTV--DKDKKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q ++  +  +IF   K+    L   LEK+G +   IHG   Q  R +IL++FK G I L+
Sbjct: 239 Q-ENNWQQALIFIETKQGAAKLVSQLEKRGITAECIHGGRSQEIREQILADFKAGKIGLL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ +AARGLDI ++  V N+D+P  A++YIHRIGRTGRAG  G+A  LV+K+D K++  
Sbjct: 298 IATGIAARGLDIDELPLVINYDLPYPADDYIHRIGRTGRAGASGEAVALVSKDDFKNLCM 357

Query: 360 IEK----LIEKK 367
           IE     LIE++
Sbjct: 358 IESRLGHLIERR 369


>gi|153939895|ref|YP_001390000.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str.
           Langeland]
 gi|152935791|gb|ABS41289.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str.
           Langeland]
 gi|295318086|gb|ADF98463.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str.
           230613]
          Length = 425

 Score =  315 bits (808), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 165/371 (44%), Positives = 241/371 (64%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   +  A+ + GY K TPIQ ++IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MLFENLEIIKPIQKALKEEGYKKTTPIQERSIPYILDGKDLVGCAQTGTGKTAAFAVPVL 60

Query: 61  TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L K +   + PR    L+L PTRELA Q+A++FE YGK  NL  A++ GG+    Q K
Sbjct: 61  QNLSKDKKANKNPRPIRALVLAPTRELAIQIAESFECYGKYINLKSAVIFGGVSQNPQTK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+LI TPGR+LD FN+  + + NIE  V+DEADRMLDMG I  ++ I S +P  
Sbjct: 121 VLREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKV 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  E+ K+ ++ +++P R+EV   SST +TI       + +  +K ALL+ 
Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVY--HVRKKQKRALLKH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ + ++++ ++F   K+    +   L + G    AIHGN  Q +R + L+NFKEG I+
Sbjct: 239 LLKDK-SIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HVFN+++P+  E Y+HRIGRTGRAG  G A +    E+ K +
Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357

Query: 358 DAIEKLIEKKV 368
            AIEKLI K++
Sbjct: 358 KAIEKLINKEI 368


>gi|124007618|ref|ZP_01692322.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134]
 gi|123986916|gb|EAY26681.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134]
          Length = 441

 Score =  315 bits (808), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 160/369 (43%), Positives = 240/369 (65%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+ +++ A+ D+GY  PTPIQ K IPLVL  HDV G+AQTGTGKTA+FVLP+L  
Sbjct: 6   FEDFKLNKQILQAITDSGYENPTPIQEKAIPLVLAGHDVMGVAQTGTGKTAAFVLPILMR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +     PR LIL PTRELA Q+    E Y ++ ++    + GG+  + Q + ++ G
Sbjct: 66  IKYAQGM--HPRALILAPTRELAIQIEKAVETYSQHTDIRFTCVYGGLGPKTQIETIQAG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR+LD ++R +L++ +I  LV+DEAD+M+DMGF+P I  I  ++P  RQ LL
Sbjct: 124 VDIVIATPGRLLDLYSREELVLKDINTLVMDEADKMMDMGFMPQINRILEIIPVKRQNLL 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +++QK+SE+FL+ P+ +EV   ++TAET+E     T      K  LL   L  +
Sbjct: 184 FSATMPEKVQKLSEDFLEFPEFVEVTPQATTAETVEQVLFET-PNIKTKINLLYHFLADE 242

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFS---VCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +T K  +IF   +KN  ++   L ++ FS   V  IH N  Q +R+  ++ FK G I+++
Sbjct: 243 ETFKRVMIFTRTRKNADSVYKFLARK-FSEDQVRVIHANKGQNTRINSMNAFKSGDIRIL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+ ARG+D+  V HV NFD+P   E+Y+HRIGRTGRA + GKA + + + D+ H+  
Sbjct: 302 VGTDVVARGIDVTLVSHVINFDIPLIYEDYVHRIGRTGRAMQSGKAISFITEADVYHMKK 361

Query: 360 IEKLIEKKV 368
           IE++I  +V
Sbjct: 362 IEQIIRLQV 370


>gi|312797197|ref|YP_004030119.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
 gi|312168972|emb|CBW75975.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
          Length = 555

 Score =  315 bits (808), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 167/370 (45%), Positives = 235/370 (63%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 7   MSFNSLGLSEPLVRAVNELGYTTPTPIQRQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 66

Query: 61  TILEKGRARV-RMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L   RA   ++P R LIL PTRELAAQV  +  +YGK   L   ++ GG+    Q   
Sbjct: 67  ERLSHSRATSGKIPVRALILTPTRELAAQVEQSVREYGKYLKLRSTVMFGGVGINPQIDA 126

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ +   +P  R
Sbjct: 127 LRRGVDIVVATPGRLLDHLQQRTIDLSSLQILVLDEADRMLDMGFIHDIKRVLKYLPSQR 186

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +DE++ +++N L +P  IEV   ++TAET+            +K  LL  L
Sbjct: 187 QNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAETVTQTIYPV--DRDRKRELLTHL 244

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +++ +  +  ++F   K     L   L K G S  AIHGN  Q +R + LS FK+GT+Q+
Sbjct: 245 IKAHNWFQV-LVFTRTKHGANRLAEQLTKDGISALAIHGNKSQAARTRALSEFKDGTLQV 303

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + + 
Sbjct: 304 LVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAISLVCIDEHQLLT 363

Query: 359 AIEKLIEKKV 368
            IE+LI++ +
Sbjct: 364 DIERLIKRTL 373


>gi|296116253|ref|ZP_06834870.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977187|gb|EFG83948.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 431

 Score =  315 bits (808), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 162/368 (44%), Positives = 232/368 (63%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L+  ++ A+ + GY  PTPIQ   IP +LQ  D+ G+AQTGTGKTA+F LP+L  
Sbjct: 4   FADLHLAEPLLRALNEEGYTTPTPIQAGAIPYLLQGRDLLGLAQTGTGKTAAFALPILNH 63

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L   KGRA  +  R L+L PTRELA+Q+AD+F  Y ++   T A++ GG+    Q + L 
Sbjct: 64  LLTSKGRAHPKGARALVLAPTRELASQIADSFASYARHMKFTHAVVFGGVGQGRQIEALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVL+  PGR+LD   +G + +  +EILV+DEADRMLDMGF+  I+ I + +P  RQT
Sbjct: 124 RGVDVLVAAPGRLLDLMGQGHVDLAGLEILVLDEADRMLDMGFVRDIRKIVATLPTDRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + +++   L++P  ++V  PSST + I    +  Y     K   L+ L+ 
Sbjct: 184 LLFSATMPKSISELAHGLLRDPATVQVTPPSSTVDRIRQAVM--YVDTGNKREALKLLVD 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S   ++  ++F   K     +   L + G +  AIHGN  Q +R + +S F+ G ++++V
Sbjct: 242 SPK-VERAVVFTLMKHEANKVAAFLNEHGITAEAIHGNKSQGARERAMSGFRSGAVKVLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV HVFN+D+PN  E+Y+HRIGRT RAGR G A +L   E    +  I
Sbjct: 301 ATDIAARGIDVDDVTHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSLCDAEQRAWLRDI 360

Query: 361 EKLIEKKV 368
           EK I KK+
Sbjct: 361 EKTIGKKI 368


>gi|299066188|emb|CBJ37372.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
           CMR15]
          Length = 481

 Score =  315 bits (808), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 167/375 (44%), Positives = 238/375 (63%), Gaps = 8/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   GL P ++ A+ ++GY + TPIQ   IP+V+   DV G AQTGTGKTA F LP++
Sbjct: 1   MTFDTFGLHPDILRALAESGYTRATPIQAAAIPVVIAGRDVMGAAQTGTGKTAGFSLPII 60

Query: 61  TIL----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L        +  R P R LIL PTRELA QV DN  KY K+  L  A++ GG+    Q
Sbjct: 61  QNLLPDASTSASPARHPVRALILTPTRELADQVYDNVAKYAKHTALRSAVVFGGVDMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L RG +VL+ TPGR+LDH  +  + ++ + +LV+DEADRMLDMGF+P +Q I +L+P
Sbjct: 121 TEQLRRGVEVLVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT + E++K++ ++L++P+ IEV   ++TA+ +    + T     K+ AL+
Sbjct: 181 AHRQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQV-IYTVPDGHKQAALV 239

Query: 236 QQLLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
             L Q   Q      I+F N K     L  +LE++  +  AIHG+  Q  RM+ L  FK+
Sbjct: 240 HLLRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQTERMQTLEAFKQ 299

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           GT+ ++VA+D+AARGLDI  +  V NFD+P  AE+Y+HRIGRTGRAG  G A +L A  D
Sbjct: 300 GTVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGD 359

Query: 354 IKHIDAIEKLIEKKV 368
            + +  IEKLI++ +
Sbjct: 360 ERLLADIEKLIKRNL 374


>gi|239816848|ref|YP_002945758.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
 gi|239803425|gb|ACS20492.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
          Length = 486

 Score =  315 bits (808), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 167/373 (44%), Positives = 237/373 (63%), Gaps = 9/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L+  +  AV + GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L  
Sbjct: 5   FSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLPLLQR 64

Query: 63  LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + K      +  R P R L+L PTRELA QVA   + Y K  NL   ++ GGI  + Q  
Sbjct: 65  MLKHENASTSPARHPVRALVLLPTRELADQVAQQVKLYAKYTNLRSTVVFGGIDMKPQTL 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P  
Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R TLLFSAT + E+++++ ++LQNP  IEV  P+ TA T+E  F +      ++   L+Q
Sbjct: 185 RTTLLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQHFYSVTDDDKRRA--LKQ 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++ Q  +    +F N K     L  SLE+ G    A+HG+  Q  R+K L++FK G + 
Sbjct: 243 IVK-QRGITQAFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLKALASFKAGEVD 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKH 356
           L+V +D+AARGLDI DV  VFNFD+P  AE+Y+HRIGRTGRAG  G A +  +   D + 
Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFASGGNDARL 361

Query: 357 IDAIEKLIEKKVD 369
           +  IEKLI+KK++
Sbjct: 362 VADIEKLIKKKIE 374


>gi|322804966|emb|CBZ02525.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum H04402 065]
          Length = 425

 Score =  315 bits (808), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 165/371 (44%), Positives = 241/371 (64%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   +  A+ + GY K TPIQ K+IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVL 60

Query: 61  TILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L K +   + PR+   L+L PTRELA Q+ ++FE YGK  NL  A++ GG+    Q K
Sbjct: 61  QNLSKDKKANKNPRSIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+LI TPGR+LD FN+  + + NIE  V+DEADRMLDMG I  ++ I S +P  
Sbjct: 121 VLREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKI 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  E+ K+ ++ +++P R+EV   SST +TI       + +  +K ALL+ 
Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVY--HVRKKQKRALLKH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ + ++++ ++F   K+    +   L + G    AIHGN  Q +R + L+NFKEG I+
Sbjct: 239 LLKDK-SIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HVFN+++P+  E Y+HRIGRTGRAG  G A +    E+ K +
Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357

Query: 358 DAIEKLIEKKV 368
            AIEKLI K++
Sbjct: 358 KAIEKLIHKEI 368


>gi|218889170|ref|YP_002438034.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
 gi|218769393|emb|CAW25153.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
          Length = 639

 Score =  315 bits (807), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 174/424 (41%), Positives = 253/424 (59%), Gaps = 16/424 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L        + R   R  R L+L PTRELAAQV D+F+ Y ++  L    + GG+   
Sbjct: 61  ERLFPAGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L +G DVL+  PGR+LD   + K+ ++++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQIQALAKGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A   +K A
Sbjct: 181 LPHKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPA--PQKRA 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L K G    AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLV-TVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             ++++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            K + AIEK+  +++   +GD    +P     ++AQ     +    PQK    D+ +++ 
Sbjct: 358 EKLLKAIEKMTRQRIP--DGDAQGFDPEAVLPEVAQP----EPREAPQKQPRRDKERRSS 411

Query: 414 SSQK 417
             +K
Sbjct: 412 RERK 415


>gi|85713494|ref|ZP_01044484.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
 gi|85699398|gb|EAQ37265.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
          Length = 479

 Score =  315 bits (807), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 176/452 (38%), Positives = 258/452 (57%), Gaps = 13/452 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL+  +  A+ +  Y+ PTPIQ +TIP+ L   D+ GIAQTGTGKTASF LP+L  
Sbjct: 10  FQDFGLADPISRALAEENYLTPTPIQAQTIPIALTGRDIVGIAQTGTGKTASFALPILHR 69

Query: 63  LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L + R +   +  R L+L PTREL+ Q+ DNF  YG++  LT AL IGG+P   Q + + 
Sbjct: 70  LLQNRIKPQPKSCRVLVLSPTRELSGQILDNFNAYGRHLRLTSALAIGGVPMGRQVRSVM 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR+LD      L +  +E LV+DEADRMLDMGFI  I+ + + +P  RQT
Sbjct: 130 HGVDVMVATPGRLLDLVQSNGLKLGQVEFLVLDEADRMLDMGFIHDIRKVIAKLPVKRQT 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  ++ +++   L++P R+ V   +ST + I    +     ++ K A L QLL+
Sbjct: 190 LLFSATMPKDIAELANQMLRDPARVAVTPVASTVDRIAQRII--QVDHASKPAHLAQLLK 247

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+ +   +IF   K     +  SL K G    AIHGN  Q  R ++L+ F+ G I+ +V
Sbjct: 248 -QEPVNRALIFTRTKHGADKVVKSLAKSGIRSNAIHGNKSQNHRERVLAAFRTGEIRTLV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDA 359
           A+D+AARG+D+  + HV NFD+PN  E Y+HRIGRT RAG  G A +LVA  E++ ++  
Sbjct: 307 ATDIAARGIDVDGISHVVNFDLPNVPETYVHRIGRTARAGTEGAAISLVAGAEEMAYLRD 366

Query: 360 IEKLIE----KKVDWLNGDLSSLNPPLEKI--DIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           IEKLI     ++    +G   +   P +    + A H HA +   +     G  RR+   
Sbjct: 367 IEKLIRVVIPREDRRTSGQREAAPAPQQHRGGNNAPHGHAARAGDV-SSGKGSRRRRGKG 425

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLGF 445
           + Q +  P    ++  +  Q  +      + F
Sbjct: 426 TPQTNRRPESSRQETPRSAQGSKPGGMQGVAF 457


>gi|113868675|ref|YP_727164.1| ATP-dependent helicase [Ralstonia eutropha H16]
 gi|113527451|emb|CAJ93796.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
           [Ralstonia eutropha H16]
          Length = 520

 Score =  315 bits (807), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 169/390 (43%), Positives = 240/390 (61%), Gaps = 11/390 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F   GL  +++ A+ + GY  PTPIQ + IP+VL   D+ G AQTGTGKTA F LP    
Sbjct: 40  FDSFGLDARILRALSEQGYTTPTPIQAQAIPVVLIGKDMMGAAQTGTGKTAGFALPIIQR 99

Query: 59  MLTILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +L +     +  R P R L+L PTRELA QV DN  +Y K+ +L   ++ GG+    Q  
Sbjct: 100 LLPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTD 159

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG ++L+ TPGR+LDH  +  + ++ +++LV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 160 ALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAH 219

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E+++++ ++L++P  IEV   +ST E +    V       K+ A++  
Sbjct: 220 RQTLLFSATFSPEIKRLASSYLKHPVTIEVARSNSTNENVRQ-MVYLVEDGHKQAAVVHL 278

Query: 238 LLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L Q   Q   +  I+F N K     L   LE++G +  AIHG+  Q  RM+ L  FK GT
Sbjct: 279 LKQRAEQGLSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEGFKSGT 338

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL-VAKEDI 354
           I  +VA+D+AARGLDIPD+  V NFDVP  AE+Y+HRIGRTGRAG  G A ++ V   D 
Sbjct: 339 IDALVATDVAARGLDIPDMPCVVNFDVPYSAEDYVHRIGRTGRAGASGDALSIYVPGNDE 398

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
           + +  IEKLI++ +    G L   +P  E+
Sbjct: 399 RLLSDIEKLIKRSIP--RGKLEGFDPTGER 426


>gi|15889610|ref|NP_355291.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
 gi|15157502|gb|AAK88076.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
          Length = 502

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 164/374 (43%), Positives = 234/374 (62%), Gaps = 4/374 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS K+V +V   GY  PTPIQ K IPL+L+  D+ G+AQTGTGKTA+F LP++ +
Sbjct: 16  FNELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIEM 75

Query: 63  LEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L K   R   R  RTLIL PTREL  Q+ DN   + K   L +  ++GG     Q  +LE
Sbjct: 76  LMKQADRPANRTTRTLILAPTRELVNQIGDNLRSFVKKTPLRINQVVGGASINKQQLQLE 135

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+LD   R  + ++ +  LV+DEAD+MLD+GFI  ++ I+ +VP  RQT
Sbjct: 136 KGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISRMVPPKRQT 195

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + +++ NFL +P ++EV  P   A+ +E  +V   A  + K  LL++ L 
Sbjct: 196 LLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQ-YVHFVAGKNDKTDLLKKSLN 254

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ I+F   K     L   LE  GF V +IHGN  Q  R + L  FK+G I+++V
Sbjct: 255 ENPDGRS-IVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVLV 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DIP V HVFN+D+P   + Y+HRIGRT RAGR G A    A ++ + +  I
Sbjct: 314 ATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHDI 373

Query: 361 EKLIEKKVDWLNGD 374
           EKL++  +   +G+
Sbjct: 374 EKLMKIDIPVASGE 387


>gi|53804862|ref|YP_113487.1| DEAD-box ATP dependent DNA helicase [Methylococcus capsulatus str.
           Bath]
 gi|53758623|gb|AAU92914.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Methylococcus
           capsulatus str. Bath]
          Length = 453

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 176/381 (46%), Positives = 248/381 (65%), Gaps = 7/381 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FADLGL+  ++ AV +AGYV PTPIQ + IPL+L   D+   AQTGTGKTA F LP+L  
Sbjct: 12  FADLGLAQPLLRAVSEAGYVHPTPIQAQAIPLLLAGGDLLAAAQTGTGKTAGFTLPILHR 71

Query: 62  ILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +LEK    R R PR LIL PTRELAAQV ++ E YGK   L   ++ GG+    Q + L 
Sbjct: 72  LLEKQAPRRPRRPRCLILAPTRELAAQVLESVEGYGKYVPLKATVMFGGVGLNPQVRALA 131

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGR+LDH  +  + ++ +EI V+DEADRMLDMGFI  I+ I  L+P  RQ 
Sbjct: 132 AGVDILVATPGRLLDHCGQNTVDLSAVEIFVLDEADRMLDMGFIRDIRRILGLLPKQRQN 191

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT +DE++ +++  L NP  +EV   ++ ++ ++   V   AQ  K+  LL  L++
Sbjct: 192 MLFSATFSDEIRTLADGLLNNPGYVEVARRNAASDLVDQT-VHLVAQEHKRD-LLTHLIR 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  ++F   K     L   L + G    AIHGN  Q +R + L++FK+GT+ ++V
Sbjct: 250 RHD-WRQVLVFTRTKHGANRLAEKLAEDGIPAAAIHGNKSQSARTRALADFKDGTVPVLV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G A +LVAKE++K + +I
Sbjct: 309 ATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGRAGSAVSLVAKEELKLLGSI 368

Query: 361 EKLIEKKVDWLNGDLSSLNPP 381
           E+LI++ +    G +   NPP
Sbjct: 369 ERLIKRPIQ--RGTVEGFNPP 387


>gi|255533359|ref|YP_003093731.1| DEAD/DEAH box helicase domain-containing protein [Pedobacter
           heparinus DSM 2366]
 gi|255346343|gb|ACU05669.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 437

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 161/367 (43%), Positives = 232/367 (63%), Gaps = 6/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY +PTPIQ + IP +LQ  D+ G AQTGTGKTA+F +PML
Sbjct: 1   MLFKELNLIEPILNALQTEGYTQPTPIQEQAIPSILQNRDLLGCAQTGTGKTAAFAIPML 60

Query: 61  TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L K     ++ +    L+L PTRELA Q+ ++F+ YGKN  +   ++ GG+  +AQ  
Sbjct: 61  QLLSKPHTNTKIHKVIKALVLTPTRELAIQIEESFKAYGKNLPIRHLVIFGGVGQKAQTD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+L+ TPGR+LD  N+G + + +IEI V+DEADRMLDMGFI  ++ + + +P  
Sbjct: 121 ALHRGVDILVATPGRLLDLMNQGFINLRDIEIFVLDEADRMLDMGFIHDVKKVIAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL FSATM  E+Q +++  L NP ++EV   SSTAE I       Y +   K  LL  
Sbjct: 181 RQTLFFSATMPKEIQGLADTILTNPVKVEVTPVSSTAEKIRQEIF--YVEKGDKKGLLMH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +LQ + T++  ++F   K     +   L K G    AIHGN  Q +R + L+NFK  T +
Sbjct: 239 ILQDK-TIETALVFARTKHGADRIVKDLIKVGVKAEAIHGNKSQNARQRALTNFKAKTTR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HV N+++PN  E Y+HRIGRTGRAG  G A +    E+ + +
Sbjct: 298 ILVATDIAARGIDVDELSHVINYELPNIPETYVHRIGRTGRAGLSGTALSFCDAEEKEFL 357

Query: 358 DAIEKLI 364
           D IEKLI
Sbjct: 358 DDIEKLI 364


>gi|88801632|ref|ZP_01117160.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
 gi|88782290|gb|EAR13467.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
          Length = 432

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 163/369 (44%), Positives = 232/369 (62%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGLSP +V AV + GY KP+PIQ K IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFKDLGLSPALVKAVEEKGYTKPSPIQEKAIPHILEGKDILASAQTGTGKTAGFTLPVL 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L E    + R  R L+L PTRELAAQV DN  +Y K  ++   ++ GG+  + Q   L
Sbjct: 61  QYLVETKHPKYRPLRALVLTPTRELAAQVHDNVREYSKYVDIKSTVVFGGVNAKPQIATL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD  ++  L    +E+L++DEADRMLDMGF+  I  I S +P  RQ
Sbjct: 121 RSGVDILVATPGRLLDLHDQKALSFKRVEVLILDEADRMLDMGFVRDINKIISFMPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +++++K++   L++P  +E    +STA+ + H         +KK     +L+
Sbjct: 181 NLMFSATFSNDIKKLASGILRDPVSVETAPQNSTAKKVTHKVYKV--DKNKKTEFTIKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +      ++F   K     L   L K   S  AIHGN  Q +R K L NFK+G+I+++
Sbjct: 239 K-EGNWNQVLVFTRTKHGANKLTEKLIKADISAAAIHGNKSQGARTKALKNFKDGSIKIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + HV NF++PN  E+Y+HRIGRTGRAG  G+A +LV  E+ ++   
Sbjct: 298 VATDIAARGLDIPLLPHVVNFELPNVPEDYVHRIGRTGRAGAAGEAISLVCSEESEYQSE 357

Query: 360 IEKLIEKKV 368
           IEKL+ +K+
Sbjct: 358 IEKLLNEKL 366


>gi|163755613|ref|ZP_02162732.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1]
 gi|161324526|gb|EDP95856.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1]
          Length = 438

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 171/411 (41%), Positives = 250/411 (60%), Gaps = 12/411 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+   GY  P+PIQ K IPLVL+R DV   AQTGTGKTA F LPML
Sbjct: 1   MSFKSLGLSDALLRAISKKGYTTPSPIQAKAIPLVLERKDVLASAQTGTGKTAGFTLPML 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L ++   R R  R LIL PTRELAAQV  N ++Y    ++   ++ GG+    Q   L
Sbjct: 61  QLLSQQPPLRKRPIRALILTPTRELAAQVYANVKEYSTFLDIRSTVIFGGVNARPQIATL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD  ++  L +  +E+LV+DEADRMLDMGF+  I+ +  LVP  RQ
Sbjct: 121 RNGVDILVATPGRLLDLHSQKALSLAKVEMLVLDEADRMLDMGFLRDIKRVIELVPKRRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + +++K++++ L +P  +E    ++TAE +            +K  LL +L+
Sbjct: 181 NLLFSATFSKDIKKLAQSILHHPVSVEATPENTTAEKVNQKVYKV--DKPRKTELLIKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+      ++F   K     L   L  +  S  AIHGN  Q +R K L  FK+GTI+++
Sbjct: 239 -SEGNWSQVLVFTRTKHGANRLTKKLIAKHISAAAIHGNKTQNARTKALDGFKKGTIRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + HV NF++PN  E+Y+HRIGRTGRAG  G+A +LV+ E+ +++  
Sbjct: 298 VATDIAARGLDIPLLPHVINFELPNVPEDYVHRIGRTGRAGASGEAISLVSAEEYEYVRG 357

Query: 360 IEKLIEKK-----VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           IEKL+++K     ++    D +   PP ++         +K+N  P+ ++G
Sbjct: 358 IEKLLDEKLHSEEIEGFEADPNYTPPPKQQ---RPQRSRKKSNSSPRGNSG 405


>gi|332186948|ref|ZP_08388689.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
 gi|332012958|gb|EGI55022.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
          Length = 459

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 165/371 (44%), Positives = 234/371 (63%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+  +V A+   GY +PTPIQ  +IP +L+  D+ GIAQTGTGKTA+FVLP +
Sbjct: 1   MSFSELGLAEPLVRALEAKGYSEPTPIQRDSIPTLLEGRDLLGIAQTGTGKTAAFVLPSI 60

Query: 61  TILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L +   RV +P   R L+L PTRELA+Q+ADN + Y K   L VA + GG       +
Sbjct: 61  QRLVEANKRV-LPTHCRMLVLAPTRELASQIADNAKGYAKFSKLAVATVFGGTSINKNRQ 119

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+L+ TPGR++D   +G L ++ IEILV+DEAD+MLD+GFI  ++ I  ++P  
Sbjct: 120 DLSRGVDILVATPGRLIDLVEQGFLNLSMIEILVLDEADQMLDLGFIHALRRIVKMIPRK 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL FSATM   ++ +++ FL NP  + V   S+TAE +E     T+    +K ALL  
Sbjct: 180 RQTLFFSATMPAAIRDLADKFLDNPATVSVTPVSTTAERVEQSV--TFVTQQEKQALLTI 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL +   ++  ++F   K     +   L   G +  AIHGN  Q  R + L  F+ G  +
Sbjct: 238 LL-ADPAIELALVFTRTKHGADRVVKLLAGNGIAANAIHGNKSQGQRERALGEFRSGQTR 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DIP V HVFNF++PN AE Y+HRIGRT RAGR G A    A+++  ++
Sbjct: 297 VLVATDIAARGIDIPGVSHVFNFELPNVAEQYVHRIGRTARAGRSGLAIAFCAEDERPYL 356

Query: 358 DAIEKLIEKKV 368
             IEKL  +K+
Sbjct: 357 KDIEKLTRQKI 367


>gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300075657|gb|ADJ65056.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 487

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 177/433 (40%), Positives = 250/433 (57%), Gaps = 12/433 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GLSP ++ A+ + GYV PTPIQ + IP+VLQ  DV G AQTGTGKTA F LP++  
Sbjct: 18  FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L +  +    P     R LIL PTRELA QVADN   Y +   L   ++ GG+    Q  
Sbjct: 78  LLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMAPQTA 137

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G +++I TPGR+LDH  +  + ++  +ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 138 ILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQ 197

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT + E++K++ +F  NP  IEV   ++TAE +       Y       A    
Sbjct: 198 RQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTI---YKVEEAAKADAVS 254

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q  +K  I+F N K     L  +L  +G    AIHG+  Q  RM  L  FK+G I+
Sbjct: 255 FIIRQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALEAFKQGQIE 314

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+D+P  AE+Y+HRIGRTGRAG  G A +L   +D + +
Sbjct: 315 VLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDDRLL 374

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPL--EKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
             IEKLI+KK +    +L+   P    E+ D A+     +      +    DR +++ SS
Sbjct: 375 TDIEKLIKKKFE--RAELTGFAPRARHERSDRAERGERSERGERSDRGDRSDRGERSRSS 432

Query: 416 QKSHIPLKESEKI 428
           ++        EK+
Sbjct: 433 REGGAAPMRREKV 445


>gi|299532061|ref|ZP_07045456.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44]
 gi|298719976|gb|EFI60938.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44]
          Length = 464

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 165/360 (45%), Positives = 231/360 (64%), Gaps = 8/360 (2%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK----GRARV 70
           AV D GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L  L +      +  
Sbjct: 8   AVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRHENASASPA 67

Query: 71  RMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           R P R L+L PTRELA QVA     Y K+  L   ++ GG+  + Q  +L++G +VL+ T
Sbjct: 68  RHPVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKPQTIELKKGVEVLVAT 127

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGR+LDH     +++N +E +V+DEADRMLD+GF+P +Q I S +P +R TLLFSAT + 
Sbjct: 128 PGRLLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKSRTTLLFSATFSP 187

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
           E+++++ ++LQ+P  IEV  P+ TA T+E  F        K+ A ++ +L+ +D ++   
Sbjct: 188 EIKRLAGSYLQDPVTIEVARPNETASTVEQRFYKV-TDDDKRYA-IRSVLKERD-IRQAF 244

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           IF N K     L  +LE+ G    A+HG+  Q  R+K L  FK G + L+V +D+AARGL
Sbjct: 245 IFSNSKLGCARLTRALERDGLRAAALHGDKSQDERLKALEAFKAGEVDLLVCTDVAARGL 304

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           DI DV  VFN+DVP  AE+Y+HRIGRTGRAG  G A TLV   D +++  IEKL +KK++
Sbjct: 305 DIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTDHDSRNVADIEKLTKKKIE 364


>gi|90408477|ref|ZP_01216636.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
 gi|90310409|gb|EAS38535.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
          Length = 426

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 164/367 (44%), Positives = 237/367 (64%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL  +++ AV + GY KP+PIQ + IP++L   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLPEELLRAVKEQGYTKPSPIQEQAIPVILSGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L KG RA+    R LIL PTRELAAQ+ ++   YG+N  L  A++ GG+    Q + L
Sbjct: 61  ANLMKGERAKANQVRVLILTPTRELAAQIHESVCNYGQNLPLRSAVVFGGVKINPQMQLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DVL+ TPGR+LD + +  +    +E+LV+DEADRMLDMGFI  I+ I   +P  RQ
Sbjct: 121 RRGVDVLVATPGRLLDLYQQNAVRFKQLEVLVLDEADRMLDMGFIHDIKRIIKFLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +++++K+++  + +P  I V+  ++TAE++           +KK  LL  L+
Sbjct: 181 NLLFSATFSNDIRKLAKGLVNDPVEISVSPRNTTAESVTQFIYEV--DKTKKSPLLSTLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++  K  ++F   K     L   LE +G    AIHGN  Q +R + L++FKEG I ++
Sbjct: 239 K-ENKWKQVLVFSKTKHGANRLVKQLEGRGILSAAIHGNKSQAARTRALASFKEGKITVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V NFD+P+ +E+Y+HRIGRTGRAG  G+A +LV +++ K +  
Sbjct: 298 VATDIAARGIDIDQLEQVVNFDLPHVSEDYVHRIGRTGRAGNKGEAISLVCEDEFKLLKD 357

Query: 360 IEKLIEK 366
           IEKLI+K
Sbjct: 358 IEKLIKK 364


>gi|90425187|ref|YP_533557.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
 gi|90107201|gb|ABD89238.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
          Length = 481

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 162/364 (44%), Positives = 228/364 (62%), Gaps = 5/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL+  +  A+ +  Y+ PTPIQ +TIPL +   DV GIAQTGTGKTASF LP++  
Sbjct: 10  FQDFGLAEAITRALKEENYLTPTPIQAQTIPLAMAGRDVVGIAQTGTGKTASFALPIIHR 69

Query: 63  LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L + R +   +  R L+L PTREL+ Q+ ++F  YG++  LT AL IGG+P   Q + + 
Sbjct: 70  LLENRIKPQPKTCRVLVLSPTRELSGQILESFNAYGRHVRLTSALAIGGVPMGRQVRSIM 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVL+ TPGR+LD      L +N +E LV+DEADRMLDMGFI  I+ I + +P  RQT
Sbjct: 130 PGLDVLVATPGRLLDLVQTNALKLNQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQT 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  ++  +++  L++P R+ V   +ST E I    +     +S K  LL Q+L+
Sbjct: 190 LFFSATMPKDIADLADQMLRDPARVAVTPVASTVERITQRII--QVDHSAKPTLLAQILK 247

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+ +   +IF   K     +   L + G +  AIHGN  Q  R ++L+ F+ G I+ +V
Sbjct: 248 -QENVNRALIFTRTKHGADKVVKGLARAGITADAIHGNKSQNHRERVLAAFRAGEIRTLV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV NFD+PN  E Y+HRIGRT RAG  G A +LVA E++  +  I
Sbjct: 307 ATDIAARGIDVDGITHVVNFDLPNIPETYVHRIGRTARAGAEGIAISLVAGEEMAFLRDI 366

Query: 361 EKLI 364
           EKLI
Sbjct: 367 EKLI 370


>gi|157737720|ref|YP_001490403.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018]
 gi|157699574|gb|ABV67734.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018]
          Length = 435

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 163/385 (42%), Positives = 251/385 (65%), Gaps = 5/385 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL  +++ A+ + GY  PTPIQ K+IP++L + DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSNLGLCKEILRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L+    + +    R LIL PTRELAAQVA + E YGK      A++ GG+    Q   
Sbjct: 61  QRLKDSNFKDKKTQVRALILTPTRELAAQVAQSVETYGKYLPFKSAVIFGGVGINPQKAL 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G D++I TPGR+LD  ++  L ++ IE LV+DEADRMLDMGFI  I+ I +++P  R
Sbjct: 121 LKKGVDIIIATPGRLLDLISQDSLDLSKIEFLVLDEADRMLDMGFINDIKKILAILPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT ++E++K+++  L++P  +EV+  +S +  +E   V  +    +K  LL  L
Sbjct: 181 QNLLFSATFSNEIKKLADGLLKSPVLVEVSKANSASFKVEQ--VVHHVDKDRKKELLLHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + ++++ +  ++F   K     L  +L K   +  AIHGN  Q +R K L +FK G +++
Sbjct: 239 V-NKNSWQQVLVFTRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV NF++PN AE+Y+HRIGRTGRAG +G A +LV  ++ +++ 
Sbjct: 298 LVATDIAARGIDIEQLPHVVNFELPNVAEDYVHRIGRTGRAGNNGIAISLVCVDEHEYLF 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLE 383
            IEKLI++K+  +  +   +NP ++
Sbjct: 358 GIEKLIKQKIKKVEINGFKVNPNIK 382


>gi|218678974|ref|ZP_03526871.1| DEAD/DEAH box helicase domain protein [Rhizobium etli CIAT 894]
          Length = 195

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 149/192 (77%), Positives = 167/192 (86%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS KV+ AV DAGY  PTPIQ   IP  L+R D+CGIAQTGTGKTASFVLPML++
Sbjct: 4   FADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLERG
Sbjct: 64  LEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I  ++PFTRQTL 
Sbjct: 124 ADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLF 183

Query: 183 FSATMTDELQKV 194
           FSATM  E+QK+
Sbjct: 184 FSATMPPEIQKL 195


>gi|315637497|ref|ZP_07892707.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
 gi|315478215|gb|EFU68938.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
          Length = 435

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 171/429 (39%), Positives = 267/429 (62%), Gaps = 7/429 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL  +++ A+ + GY  PTPIQ K+IP++L + DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSNLGLCKEILRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L+    + +    R LIL PTRELAAQVA + E YGK      A++ GG+    Q   
Sbjct: 61  QRLKDSNLKDKKTQVRALILTPTRELAAQVAQSVETYGKYLPFKSAVIFGGVGINPQKAL 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G D++I TPGR+LD  ++  L ++ IE LV+DEADRMLDMGFI  I+ I +++P  R
Sbjct: 121 LKKGVDIIIATPGRLLDLISQDSLDLSKIEFLVLDEADRMLDMGFINDIKKILAILPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT ++E++K+++  L++P  +EV+  +S +  +E   V  +    +K  LL  L
Sbjct: 181 QNLLFSATFSNEIKKLADGLLKSPVLVEVSKANSASFKVEQ--VVHHVDKDRKKELLLHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + ++++ +  ++F   K     L  +L K   +  AIHGN  Q +R K L +FK G +++
Sbjct: 239 V-NKNSWQQVLVFTRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV NF++PN AE+Y+HRIGRTGRAG +G A +LV  ++ +++ 
Sbjct: 298 LVATDIAARGIDIEQLPHVVNFELPNVAEDYVHRIGRTGRAGNNGIAISLVCVDEHEYLF 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IE+LI++K+  +  +   +NP ++   I   N + + N     +     + KN +S  S
Sbjct: 358 GIERLIKQKIKKVEINGFKVNPNIKAEPIG--NRSNRGNKANNSNQNRKVKPKNENSSSS 415

Query: 419 HIPLKESEK 427
             P + + K
Sbjct: 416 TKPRRFASK 424


>gi|313682743|ref|YP_004060481.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313155603|gb|ADR34281.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 431

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 161/371 (43%), Positives = 237/371 (63%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L+  ++ A+ D GY  PTP+Q + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFTDLQLNDSLLKAINDQGYTTPTPVQAQAIPFILEGRDMLAGAQTGTGKTAGFTLPLL 60

Query: 61  TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            IL   K     R  R LIL PTRELAAQV ++ + YGK   L  A++ GG+    Q   
Sbjct: 61  QILSDRKQPKTHRKIRALILTPTRELAAQVGESVKLYGKYLPLKSAVIFGGVGINPQITM 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+LI TPGR+LDH  +G + ++ +EI V+DEADRMLDMGFI  I+ + +++P  R
Sbjct: 121 LRNGVDILIATPGRLLDHVGQGTVDLSGVEIFVLDEADRMLDMGFIRDIRRVITILPKVR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +D+++ ++   L+NP  +EV   ++++E ++   +       +K +LL +L
Sbjct: 181 QNLLFSATYSDDIKTLANTLLRNPAEVEVARRNTSSELVKQSVI--LVDCKRKSSLLGEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F   K     L   L+K G +  AIHGN  Q +R K L +FK  ++++
Sbjct: 239 I-GKHKWEQVLVFTRTKHGANKLTEYLQKIGITAAAIHGNKSQSARTKALDDFKRSSVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV NF++PN AE+Y+HRIGRTGRAG  G+A +LV  ++  ++ 
Sbjct: 298 LVATDIAARGIDIDALPHVVNFELPNIAEDYVHRIGRTGRAGCEGEALSLVCVDEADYLR 357

Query: 359 AIEKLIEKKVD 369
            IEKLI KK+D
Sbjct: 358 GIEKLINKKLD 368


>gi|51892785|ref|YP_075476.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51856474|dbj|BAD40632.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 526

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 163/368 (44%), Positives = 234/368 (63%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL LS KV+ A+ D G+ +P+PIQ + IP +LQ  DV G AQTGTGKTA+F +P++
Sbjct: 6   LTFRDLALSEKVLKALDDMGFEEPSPIQAQAIPALLQGKDVIGQAQTGTGKTAAFGVPIV 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  G+   R  + L+L PTRELA QVA+   K G++  +    + GG   E Q + L 
Sbjct: 66  ERLVPGQ---RAVQALVLTPTRELAIQVAEEITKIGRHARVKTIAIYGGQSIERQIRSLR 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV+I TPGRILDH  R  L ++ + ++V+DEAD MLDMGFI  I+ I    P  RQT
Sbjct: 123 FGVDVVIGTPGRILDHLGRSTLDLSQVRMVVLDEADEMLDMGFIEDIEKILQNTPAERQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+++++  ++++P  I V     T   I+  F      +  K   L ++L 
Sbjct: 183 LLFSATMPPEIRRLAGRYMRDPITISVTPQQLTVPQIDQYFCEVRPSF--KTEALTRILD 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++ ++ GI FC  KK V  L  +L+ +G+    IHG+++Q  R +++S FKEG I+L+V
Sbjct: 241 IEN-VERGICFCRTKKGVDELVEALQARGYQAEGIHGDMNQAQRNRVMSRFKEGYIELLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI DV HVFN+D+P   E+Y+HRIGRTGRAGR G A TLV   +   +  I
Sbjct: 300 ATDVAARGLDISDVTHVFNYDIPQDPESYVHRIGRTGRAGRTGTAITLVTPREFPQLRLI 359

Query: 361 EKLIEKKV 368
           E++I+ ++
Sbjct: 360 ERVIKARL 367


>gi|254457659|ref|ZP_05071087.1| putative helicase [Campylobacterales bacterium GD 1]
 gi|207086451|gb|EDZ63735.1| putative helicase [Campylobacterales bacterium GD 1]
          Length = 423

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 159/370 (42%), Positives = 241/370 (65%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY +PTPIQ + IP++L R D+   AQTGTGKTA F LPML
Sbjct: 1   MSFNTLGLSAPLLKAIKEQGYTEPTPIQKQAIPVILNRKDILAGAQTGTGKTAGFTLPML 60

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L + +  +     + LIL PTRELAAQVA++ E YGK+      ++ GG+    Q  +
Sbjct: 61  ELLSRAKHTSGKHHVKALILTPTRELAAQVAESVEVYGKHLPFKSCVIFGGVKINPQIVQ 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D++I TPGR+LDH ++  + ++ ++ L++DEADRMLDMGFI  I+ I  ++P  R
Sbjct: 121 LRKGIDIVIATPGRLLDHISQKTIDLSKVDFLILDEADRMLDMGFINDIRKILEILPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +DE++K+S+  L +P  IEV   ++ +ET++        +  +K  LL  L
Sbjct: 181 QNLLFSATYSDEIKKLSDRLLNSPTLIEVARRNTASETVKQAVYPVDKE--RKRELLTHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +    K  ++F   K     L   LEK G +  AIHGN  Q +R K L++FK+  +++
Sbjct: 239 I-NDGKWKQVLVFTRTKHGANRLSDQLEKDGITSAAIHGNKSQNARTKALADFKKSEVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV N+++PN +E+Y+HRIGRTGRAG  G+A +LV  ++++++ 
Sbjct: 298 LVATDIAARGIDIDQLPHVVNYELPNVSEDYVHRIGRTGRAGNEGEAISLVCVDELEYLA 357

Query: 359 AIEKLIEKKV 368
            IEKLI K +
Sbjct: 358 NIEKLINKDI 367


>gi|13470594|ref|NP_102163.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
 gi|14021336|dbj|BAB47949.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
          Length = 467

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 166/396 (41%), Positives = 248/396 (62%), Gaps = 13/396 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA LG++  ++ A  +AG+ +P PIQ++ IP  L+  D+ GIAQTG+GKTA+F LP+L+ 
Sbjct: 12  FAALGITGALLKATHNAGFTEPKPIQMQAIPPQLEGRDIFGIAQTGSGKTAAFALPILSK 71

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+ D  +   K  +++ AL++GG+   +Q KK+ 
Sbjct: 72  IIALGTKRRAKTTRALILAPTRELAVQIEDTIKILAKGAHVSTALVLGGVSRFSQVKKVA 131

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+LI TPGR+ D    G L++++ + LV+DE DRMLDMGFI  ++ I       RQT
Sbjct: 132 PGVDILIATPGRLTDLVREGDLILSDTKWLVLDEGDRMLDMGFINDVKRIAKATAPDRQT 191

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM DE+ ++++  L+NP RIEV+  S+ A  I    V  +A+  +K  +L  +L 
Sbjct: 192 ALFSATMPDEIAELAKGLLKNPVRIEVSPQSTAAAEIVQGVV--FARTKQKRQVLSTML- 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + MK+ IIF   K     +   LE+ GF    IHGN  Q +R K L++F+EG+++++V
Sbjct: 249 ADEAMKSVIIFSRTKHGADRVTKDLERDGFKAAVIHGNKSQNARQKALNDFREGSVRILV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+P + HV NFD+P+ AE+Y+HRIGRTGR G  G A TL    +   +  +
Sbjct: 309 ATDIAARGIDVPGISHVVNFDLPDEAESYVHRIGRTGRNGMDGIAITLCDPSENSKLRQV 368

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
           E++I  K+  +   L S +P        Q N A KN
Sbjct: 369 ERIIRTKLPIVADHLGSPDP--------QRNPAEKN 396


>gi|119897299|ref|YP_932512.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
 gi|119669712|emb|CAL93625.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
          Length = 494

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 167/374 (44%), Positives = 243/374 (64%), Gaps = 10/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGL P++  AV DAGY +PTPIQ + IP+V+  +DV G AQTGTGKTA F LP+L
Sbjct: 1   MSFADLGLIPELQRAVADAGYTEPTPIQRQAIPIVIAGNDVMGGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L +       P     R LIL PTRELA QV ++ + Y K+  L    + GG+    Q
Sbjct: 61  HRLARHANTSTSPARHQTRALILAPTRELAMQVYESVKTYSKHLPLRATCIYGGVDMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L RG +++I TPGR+LDH  +  + +  +E+LV+DEADRMLDMGFIP I+ I +L+P
Sbjct: 121 IQELRRGIEIVIATPGRLLDHVQQKTINLTQVEMLVLDEADRMLDMGFIPDIKRILALLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +RQ+LLFSAT +DE++K+++  L+NP+ IEV   +  +ETI H      +   +   LL
Sbjct: 181 ASRQSLLFSATFSDEIKKLADQMLKNPQLIEVARRNMVSETITHRVHPVSSGMKRN--LL 238

Query: 236 QQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             LL+ Q DT    ++F + K     L H LE+   S  +IHG+  Q+ R + L  FK G
Sbjct: 239 AHLLRHQPDT--QALVFVDTKLVCGRLAHFLERHSISADSIHGDKSQQQRTETLEAFKAG 296

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            ++++VA+D+AARG+DI ++ +V N+++P+ AE+Y+HRIGRTGRAG  G A +LV  E+ 
Sbjct: 297 KLRVLVATDVAARGIDIDELPYVINYELPHTAEDYVHRIGRTGRAGHQGNAVSLVCTEEK 356

Query: 355 KHIDAIEKLIEKKV 368
             +  I+KLI+ ++
Sbjct: 357 HLLADIQKLIKLEI 370


>gi|86132795|ref|ZP_01051387.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
 gi|85816749|gb|EAQ37935.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
          Length = 425

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 163/370 (44%), Positives = 237/370 (64%), Gaps = 6/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ K IP VL+  DV   AQTGTGKTA F LPML
Sbjct: 1   MSFKSLGLSDALLKAVSEKGYTTPSPIQQKAIPKVLEGKDVLASAQTGTGKTAGFTLPML 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++   R   R  R L+L PTRELAAQ+ DN  +Y K  ++   ++ GG+    Q + +
Sbjct: 61  HNLIANPRQGRRKVRALVLTPTRELAAQIYDNVREYSKYVDIKSTVIFGGVNQNPQVRTI 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD  N+G L +++IE LV+DEADRMLDMGFI  I+ +  LVP  RQ
Sbjct: 121 RQGVDILVATPGRLLDLENQGLLSLSDIEFLVLDEADRMLDMGFIHDIKKVLRLVPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQL 238
            LLFSAT   +++K++ + L NP  +E    ++TAE ++     TY    S+K  +L + 
Sbjct: 181 NLLFSATFNKDIKKLASSILTNPVLVEATPENTTAEKVDQ---KTYRVDKSRKTEMLIKF 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + ++      ++F   K     L   L+K G +  AIHGN  Q +R+K L+ FK G I++
Sbjct: 238 I-NEGNWDQVLVFTRTKHGANRLSQKLDKAGITSAAIHGNKTQNARVKALAGFKSGKIRV 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIP + +V N+++PN  E+Y+HRIGRTGRAG  G+A +LV  +++ ++ 
Sbjct: 297 LVATDIAARGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVAYVR 356

Query: 359 AIEKLIEKKV 368
            IEKL+ +K+
Sbjct: 357 GIEKLLGEKL 366


>gi|116054159|ref|YP_788602.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|313111948|ref|ZP_07797737.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           aeruginosa 39016]
 gi|115589380|gb|ABJ15395.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|310884239|gb|EFQ42833.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           aeruginosa 39016]
          Length = 639

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 174/424 (41%), Positives = 253/424 (59%), Gaps = 16/424 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L        + R   R  R L+L PTRELAAQV D+F+ Y ++  L    + GG+   
Sbjct: 61  ERLFPAGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L +G DVL+  PGR+LD   + K+ ++++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQIQALAKGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A   +K A
Sbjct: 181 LPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPA--PQKRA 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L K G    AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLV-TVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             ++++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            K + AIEK+  +++   +GD    +P     ++AQ     +    PQK    D+ +++ 
Sbjct: 358 EKLLKAIEKMTRQRIP--DGDAQGFDPEAVLPEVAQP----EPREAPQKQPRRDKERRSS 411

Query: 414 SSQK 417
             +K
Sbjct: 412 RERK 415


>gi|15595625|ref|NP_249119.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|9946285|gb|AAG03817.1|AE004480_1 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
          Length = 639

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 174/424 (41%), Positives = 253/424 (59%), Gaps = 16/424 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L        + R   R  R L+L PTRELAAQV D+F+ Y ++  L    + GG+   
Sbjct: 61  ERLFPAGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L +G DVL+  PGR+LD   + K+ ++++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQIQALAKGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A   +K A
Sbjct: 181 LPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPA--PQKRA 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L K G    AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLV-TVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             ++++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            K + AIEK+  +++   +GD    +P     ++AQ     +    PQK    D+ +++ 
Sbjct: 358 EKLLKAIEKMTRQRIP--DGDAQGFDPEAVLPEVAQP----EPREAPQKQPRRDKERRSS 411

Query: 414 SSQK 417
             +K
Sbjct: 412 RERK 415


>gi|329115283|ref|ZP_08244038.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
 gi|326695726|gb|EGE47412.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
          Length = 488

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 162/390 (41%), Positives = 242/390 (62%), Gaps = 12/390 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+DL L+P ++ A+ + GY  PTPIQ ++IP +LQ  D+ G+AQTGTGKTASF LP+L  
Sbjct: 52  FSDLALAPPLLKALAEQGYDTPTPIQERSIPYLLQGRDLLGLAQTGTGKTASFALPILEH 111

Query: 62  ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +++  RA   + PR L+L PTREL AQ++D+F+ Y ++   T A++ GG+    Q + + 
Sbjct: 112 LIKNPRANTPKQPRVLVLAPTRELVAQISDSFKAYARHMKFTQAVVFGGVGQGRQVEAMR 171

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVL+  PGR+LD   +G + ++ +EILV+DEADRMLDMGF+  I+ I + VP  RQT
Sbjct: 172 RGVDVLVAAPGRLLDLMGQGFIDLSGLEILVLDEADRMLDMGFVRDIRRIMTFVPEQRQT 231

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ ++ + L +P R+EV  PSST + I+   +       K+ ALL  +  
Sbjct: 232 LLFSATMPRSIEDLAASLLNDPARVEVAPPSSTVDRIQQAVMFVNGAGDKRDALLNMV-- 289

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   ++F   K     +   L K      AIHGN  Q +R + +  F+ G+++++V
Sbjct: 290 ESPKVSRAVVFTLMKHEANKVAEFLNKNNVVAEAIHGNKSQGARERAMKGFRSGSVKVLV 349

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV HVFN+D+PN  E+Y+HRIGRT RAGR G A +    E    +  I
Sbjct: 350 ATDIAARGIDVDDVSHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSFCDAEQRAWLRDI 409

Query: 361 EKLIEKKV------DWLN--GDLSSLNPPL 382
           E+ I K V       W +   + S++ PP+
Sbjct: 410 ERTIGKTVPVVRDHPWHSDEAEASTMRPPV 439


>gi|254431629|ref|ZP_05045332.1| DNA and RNA helicase [Cyanobium sp. PCC 7001]
 gi|197626082|gb|EDY38641.1| DNA and RNA helicase [Cyanobium sp. PCC 7001]
          Length = 437

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 164/363 (45%), Positives = 228/363 (62%), Gaps = 4/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   ++ AV + GY  P+PIQ++ IP VL  HDV   AQTGTGKTA F LPML  
Sbjct: 5   FAALGLGLPILKAVAEKGYTTPSPIQLECIPTVLAGHDVMAAAQTGTGKTAGFTLPMLER 64

Query: 63  LEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G  AR  + R L+L PTRELAAQVA+N   YG+  +L   ++ GG+    Q  +L  
Sbjct: 65  LRHGPHARGGVVRALVLTPTRELAAQVAENVAAYGRYLDLRSDVVFGGVKINPQINRLRA 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GAD+L+ TPGR+LD   +  + ++ +E+LV+DEADRMLDMGFI  IQ + +L+P  RQ L
Sbjct: 125 GADILVATPGRLLDLQQQRAIRLDRVEVLVLDEADRMLDMGFIRDIQKLLALLPPKRQNL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT +  ++K++   L  P +++    +  A T+EH         ++K  LL  L+ S
Sbjct: 185 LFSATFSPSIRKLAHGLLHQPVQLQATPENQAAPTVEHLL--HPCDMARKPELLTHLIAS 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D  +  ++F   K     +   L   G    AIHGN  Q +R + L+ FK G ++++VA
Sbjct: 243 ND-WQQVLVFSRTKHGANRMADRLCAAGLEAAAIHGNKSQGARTRALAGFKTGEVRVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+DI  + HV N D+PN+AE+Y+HRIGRTGRAG  G A +LVA E+ + + AIE
Sbjct: 302 TDLAARGIDIHQLPHVVNLDLPNQAEDYVHRIGRTGRAGHPGHAISLVAAEEHELLGAIE 361

Query: 362 KLI 364
           +LI
Sbjct: 362 RLI 364


>gi|237793963|ref|YP_002861515.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Ba4 str.
           657]
 gi|229261675|gb|ACQ52708.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Ba4 str.
           657]
          Length = 425

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 165/371 (44%), Positives = 240/371 (64%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   +  A+ + GY K TPIQ K+IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVL 60

Query: 61  TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L K +   + PR    L+L PTRELA Q+A++FE YGK  NL   ++ GG+    Q K
Sbjct: 61  QNLSKDKKANKNPRPIRALVLAPTRELAIQIAESFECYGKYINLKSVVIFGGVSQNPQTK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+LI TPGR+LD FN+  + + NIE  V+DEADRMLDMG I  ++ I S +P  
Sbjct: 121 VLREGVDILIATPGRMLDLFNQKYIDLRNIEFFVLDEADRMLDMGMIHDVKKIISKLPKI 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  E+ K+ ++ +++P R+EV   SST +TI       + +  +K ALL+ 
Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVY--HVRKKQKRALLKH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ + ++++ ++F   K+    +   L + G    AIHGN  Q +R + L+NFKEG I+
Sbjct: 239 LLKDK-SIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HVFN+++P+  E Y+HRIGRTGRAG  G A +    E+ K +
Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357

Query: 358 DAIEKLIEKKV 368
            AIEKLI K++
Sbjct: 358 KAIEKLINKEI 368


>gi|323485816|ref|ZP_08091151.1| ATP-dependent RNA helicase RhlE [Clostridium symbiosum WAL-14163]
 gi|323400804|gb|EGA93167.1| ATP-dependent RNA helicase RhlE [Clostridium symbiosum WAL-14163]
          Length = 458

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 169/375 (45%), Positives = 238/375 (63%), Gaps = 6/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F DL LSP ++ A+ + GYV P+PIQ K IP VL   DV G AQTGTGKTA+F LP++
Sbjct: 13  MNFKDLQLSPLLLKALEEKGYVSPSPIQEKAIPHVLAGRDVLGCAQTGTGKTAAFALPII 72

Query: 61  TILEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L K    +   R+ R+LIL PTR+LA Q+A+NF++YG   ++  A++ GG+    Q +
Sbjct: 73  QNLMKPSEKKYSKRVIRSLILTPTRKLALQIAENFKEYGSRTSVRCAVIFGGVSANPQIE 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG D+L+ TPGR+ D   +G + +  +EI V+DEADRMLDMGFI  ++ I SL+P  
Sbjct: 133 ELRRGIDILVATPGRLNDLVGQGFVDLAYVEIFVLDEADRMLDMGFIHDVKKIISLLPVR 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTLLFSATM  E+Q +++  L NP R+EV   SST + I+      Y     K +LL  
Sbjct: 193 KQTLLFSATMPAEIQALTDKLLHNPARVEVTPVSSTVDIIDASLY--YVDKENKRSLLVY 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL  +D + + ++F   K     +   L K   S  AIHG+  Q +R   LS+FK G IQ
Sbjct: 251 LLNHED-ITSTLVFTRTKHGADRVAKFLVKNRISAAAIHGDKSQGARQTALSHFKSGEIQ 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++  V NFD+PN  E YIHRIGRTGRAG  G+A +    E+  ++
Sbjct: 310 VLVATDIAARGIDIEELSCVINFDLPNIPETYIHRIGRTGRAGLDGRAISFSDIEEKAYV 369

Query: 358 DAIEKLIEKKVDWLN 372
             IEKL  K +  ++
Sbjct: 370 KDIEKLTGKAIPVVD 384


>gi|284037338|ref|YP_003387268.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
 gi|283816631|gb|ADB38469.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
          Length = 485

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 158/376 (42%), Positives = 240/376 (63%), Gaps = 7/376 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L   ++ A+ + GY  PTPIQ K IP++L R D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MQFSELSLIDPILKALTEEGYTNPTPIQEKAIPILLSRRDLLGCAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +L + R++     R  +TLIL PTRELA Q+A++F  YG++ N+   ++ GG+   +Q 
Sbjct: 61  QLLSEERSKSTGGPRRIKTLILTPTRELAIQIAESFTAYGRHLNIRNTVIFGGVSQHSQV 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+ G DVLI TPGR+LD  N+G + + +++  V+DEADRMLDMGFI  ++ + + +P 
Sbjct: 121 NTLKAGVDVLIATPGRLLDLMNQGFISLRDVQFFVLDEADRMLDMGFIHDVKKVITKLPT 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ+L FSATM  ++ K+++  L NP ++EV   SSTA+TIE      +     K  LL 
Sbjct: 181 HRQSLFFSATMPPDVAKLADTILNNPAKVEVTPVSSTADTIEQAMY--FVGKEDKRKLLV 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +L  ++ +K+ ++F   K     +   L K G    AIHGN  Q +R + LSNFK    
Sbjct: 239 HILDDKN-IKSALVFARTKHGADKVVKDLLKAGIGAEAIHGNKSQNARQRALSNFKSRET 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARG+D+ ++ HV N+++PN  E Y+HRIGRTGRAG  G A +    E+ ++
Sbjct: 298 RVLVATDIAARGIDVDELSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCDAEETEY 357

Query: 357 IDAIEKLIEKKVDWLN 372
           +  I KLI K+V  ++
Sbjct: 358 LRDIHKLIGKRVPVID 373


>gi|329898744|ref|ZP_08272452.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC3088]
 gi|328920765|gb|EGG28222.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC3088]
          Length = 412

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 159/375 (42%), Positives = 242/375 (64%), Gaps = 5/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+DLGLSPK++ A+ D GY  PT IQ   I  VLQ  D+   AQTGTGKTA+F LP+L
Sbjct: 1   MNFSDLGLSPKLLQAISDTGYTTPTAIQSAAIGPVLQGKDLMASAQTGTGKTAAFTLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +     + P+ LI+ PTRELAAQ+  + + Y K  +     + GG+    Q ++L+
Sbjct: 61  ETLLRKPNSSKSPKFLIITPTRELAAQIEASAQTYSKYISCRTLAVFGGVKIGPQIRQLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR+LD   +G++ +  I++LV+DEADRMLDMGFIP I+ I  L+P T+QT
Sbjct: 121 QGVDVLIATPGRLLDLSEQGEVDLKMIDVLVLDEADRMLDMGFIPAIRRIQKLLPATKQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT +DE++ +++ +L+ P  + V   ++ A T++           +K A+LQ LL 
Sbjct: 181 LMFSATYSDEIRTLAQTYLRRPVEVSVTPKNAAAHTVDQLIYPV--DKKQKSAVLQYLLN 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   ++  ++F   K     L   L+K      AIHGN  Q  R K L++FK G I ++V
Sbjct: 239 NYGWVQV-LVFSRTKHGANKLVRELDKANIRAAAIHGNRSQSQRTKALADFKSGKIAVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RG+DI  +  V NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  +++K +  I
Sbjct: 298 ATDIASRGIDIAQLPVVINFDLPNVPEDYVHRIGRTGRAGSNGRAISLVCADEVKQLRDI 357

Query: 361 EKLIEKKV--DWLNG 373
           E++I +++  ++++G
Sbjct: 358 ERVISRQLPREFIDG 372


>gi|86134655|ref|ZP_01053237.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
 gi|85821518|gb|EAQ42665.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
          Length = 438

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 165/369 (44%), Positives = 227/369 (61%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS   V AV + GY KP+PIQ K IP +L+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFKSLGLSDAFVKAVEEKGYTKPSPIQEKAIPHILEGKDVLASAQTGTGKTAGFTLPVL 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L E    + R  R L+L PTRELAAQV DN  +Y K  N+  A++ GG+   +Q   L
Sbjct: 61  QYLSETKHPKYRPIRALVLTPTRELAAQVHDNVREYSKYVNIKSAVVFGGVKAASQIATL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG D+L+ TPGR+LD  ++  +    I++ ++DEADRMLDMGF+  I  I S +P  RQ
Sbjct: 121 KRGVDILVATPGRLLDLHDQKAVSFKRIDVFILDEADRMLDMGFVRDINKIISYMPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT + E++K++   L+NP  +E    +STA+ + H     Y    KK       L
Sbjct: 181 NLMFSATFSKEIKKLASGILKNPVEVETAPQNSTAKKVSH---KVYQIDKKKKTEFTIKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     +IF   K     L  +L K   S  AIHGN  Q +R K L NFK+ TI+++
Sbjct: 238 IKDNNWNQVLIFTRTKHGANRLTQNLIKSKISAAAIHGNKSQGARTKALKNFKDNTIKVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + +V N+++PN  E+Y+HRIGRTGRAG  G+A +LV  E+ ++   
Sbjct: 298 VATDIAARGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGAKGEAISLVCSEETEYQKE 357

Query: 360 IEKLIEKKV 368
           IEKL+ +K+
Sbjct: 358 IEKLLNEKL 366


>gi|296386927|ref|ZP_06876426.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 639

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 174/424 (41%), Positives = 253/424 (59%), Gaps = 16/424 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L        + R   R  R L+L PTRELAAQV D+F+ Y ++  L    + GG+   
Sbjct: 61  ERLFPAGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L +G DVL+  PGR+LD   + K+ ++++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQIQALAKGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A   +K A
Sbjct: 181 LPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPA--PQKRA 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L K G    AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLV-TVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             ++++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            K + AIEK+  +++   +GD    +P     ++AQ     +    PQK    D+ +++ 
Sbjct: 358 EKLLKAIEKMTRQRIP--DGDAQGFDPEAVLPEVAQP----EPREAPQKQPRRDKERRSS 411

Query: 414 SSQK 417
             +K
Sbjct: 412 RERK 415


>gi|254243526|ref|ZP_04936848.1| hypothetical protein PA2G_04344 [Pseudomonas aeruginosa 2192]
 gi|126196904|gb|EAZ60967.1| hypothetical protein PA2G_04344 [Pseudomonas aeruginosa 2192]
          Length = 639

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 174/424 (41%), Positives = 253/424 (59%), Gaps = 16/424 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L        + R   R  R L+L PTRELAAQV D+F+ Y ++  L    + GG+   
Sbjct: 61  ERLFPAGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L +G DVL+  PGR+LD   + K+ ++++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQIQALAKGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A   +K A
Sbjct: 181 LPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPA--PQKRA 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L K G    AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLV-TVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             ++++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            K + AIEK+  +++   +GD    +P     ++AQ     +    PQK    D+ +++ 
Sbjct: 358 EKLLKAIEKMTRQRIP--DGDAQGFDPEAVLPEVAQP----EPREAPQKQPRRDKERRSS 411

Query: 414 SSQK 417
             +K
Sbjct: 412 RERK 415


>gi|332293596|ref|YP_004432205.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171682|gb|AEE20937.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 427

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 239/372 (64%), Gaps = 10/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ K IP+VLQ  DV   AQTGTGKTA F LPM+
Sbjct: 1   MSFKSLGLSDALLKAVSEKGYTTPSPIQQKAIPVVLQGKDVLASAQTGTGKTAGFTLPMI 60

Query: 61  TIL----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L    ++GR ++R    L+L PTRELAAQ+ +N  +Y K  ++   ++ GG+    Q 
Sbjct: 61  HRLINNPKQGRRKIR---ALVLTPTRELAAQIQENVLEYSKYVDIKSMVIFGGVNQNPQV 117

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L +G D+L+ TPGR+LD  N+G L ++++E LV+DEADRMLDMGFI  I+ +  +VP 
Sbjct: 118 RTLRQGVDILVATPGRLLDLQNQGLLSLSDVEFLVLDEADRMLDMGFIHDIKKVLKMVPA 177

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT   +++K + + L NP  +E    ++TAE ++    +     S+K  +L 
Sbjct: 178 KRQNLLFSATFNTDIKKFASSILTNPVLVEATPENTTAEKVDQK--SYRVDKSRKTEMLI 235

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + ++ +      ++F   K     L   LEK G S  AIHGN  Q +R+K L+ FK G +
Sbjct: 236 KFIR-EGNWDQVLVFTRTKHGANRLSQKLEKDGISSAAIHGNKTQNARVKALAGFKSGKV 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDIP + +V N+++PN  E+Y+HRIGRTGRAG  G+A +LV  +++ +
Sbjct: 295 RVLVATDIAARGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVDY 354

Query: 357 IDAIEKLIEKKV 368
           +  IEKL+ +K+
Sbjct: 355 VRGIEKLLGEKL 366


>gi|300088260|ref|YP_003758782.1| DEAD/DEAH box helicase domain-containing protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527993|gb|ADJ26461.1| DEAD/DEAH box helicase domain protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 429

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 170/406 (41%), Positives = 248/406 (61%), Gaps = 14/406 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L P V   V  AGY +PTPIQ + IP  LQ  D+ G+AQTGTGKT +FVLPML
Sbjct: 1   MTFENFDLHPAVRDGVKSAGYTEPTPIQAQAIPPALQGRDLIGLAQTGTGKTTAFVLPML 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G R ++R    LI+ PTRELA Q+ D+ +   ++  L    + GG+  E Q  KL
Sbjct: 61  QRLLRGPRGKLR---GLIVSPTRELAEQIYDSVKTLSQHTGLRAMAIYGGVGMEPQKAKL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS-LVPFTR 178
             G D++I  PGR+LDH  +G +  +++E+LVIDEADRM DMGF+P I+ I   LV   R
Sbjct: 118 RAGTDIVIACPGRLLDHVWQGTIDFDDVEMLVIDEADRMFDMGFLPDIRKILRCLVRPER 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM  +++K+ + FL +P  +++ T  + A T+ H       +   K ALL+Q+
Sbjct: 178 QTLLFSATMPADVRKLVQEFLTDPVTVQIGT-VAPAVTVTHALYPV--RQDLKTALLKQI 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+  +   + ++F   K     +  +L + G++V +I GN+ Q  R   L  FK+GT ++
Sbjct: 235 LRQIEDAGSVLVFTRTKHRTERVAIALRQAGYAVASIQGNLSQYRRQAALDGFKDGTFKV 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RG+D+ DV HV N+D+P+ A+ YIHRIGRTGR GR G AFT V  ED   + 
Sbjct: 295 LVATDIASRGIDVSDVSHVINYDMPDTADAYIHRIGRTGRIGRSGDAFTFVTPEDESMVR 354

Query: 359 AIEKLIEKKVD--WLNG-DLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           A+EKL++  ++   + G D ++  PP  +   A     R N P P+
Sbjct: 355 ALEKLLKTTIERRTVEGFDYNAPEPPPSRFSGAP---GRGNRPAPK 397


>gi|300703503|ref|YP_003745105.1| ATP-dependent RNA helicase, dead-box family [Ralstonia solanacearum
           CFBP2957]
 gi|299071166|emb|CBJ42480.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
           CFBP2957]
          Length = 495

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 166/373 (44%), Positives = 237/373 (63%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL P ++ A+ ++GY +PTPIQ   IP+V+   DV G AQTGTGKTA F LP++  
Sbjct: 17  FDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQN 76

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QV DN  KY K   L  A++ GG+    Q +
Sbjct: 77  LLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTE 136

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++L+ TPGR+LDH  +  + ++ + +LV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 137 QLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAH 196

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++ ++L++P+ IEV   ++TA+ +    + T     K+ AL+  
Sbjct: 197 RQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQV-IYTVPDGHKQAALVHL 255

Query: 238 LLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L Q   Q      I+F N K     L  +LE++  +  AIHG+  Q  RM+ L  FK+GT
Sbjct: 256 LRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQGT 315

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGLDI  +  V NFD+P  AE+Y+HRIGRTGRAG  G A +L A  D +
Sbjct: 316 VDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDER 375

Query: 356 HIDAIEKLIEKKV 368
            +  IEKLI++ +
Sbjct: 376 LLADIEKLIKRNL 388


>gi|207723759|ref|YP_002254157.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
 gi|207743814|ref|YP_002260206.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
 gi|206588963|emb|CAQ35925.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
 gi|206595214|emb|CAQ62141.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
          Length = 495

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 166/373 (44%), Positives = 237/373 (63%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL P ++ A+ ++GY +PTPIQ   IP+V+   DV G AQTGTGKTA F LP++  
Sbjct: 17  FDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQN 76

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QV DN  KY K   L  A++ GG+    Q +
Sbjct: 77  LLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTE 136

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++L+ TPGR+LDH  +  + ++ + +LV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 137 QLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAH 196

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++ ++L++P+ IEV   ++TA+ +    + T     K+ AL+  
Sbjct: 197 RQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQV-IYTVPDGHKQAALVHL 255

Query: 238 LLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L Q   Q      I+F N K     L  +LE++  +  AIHG+  Q  RM+ L  FK+GT
Sbjct: 256 LRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQGT 315

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGLDI  +  V NFD+P  AE+Y+HRIGRTGRAG  G A +L A  D +
Sbjct: 316 VDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDER 375

Query: 356 HIDAIEKLIEKKV 368
            +  IEKLI++ +
Sbjct: 376 LLADIEKLIKRNL 388


>gi|34496458|ref|NP_900673.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
 gi|34102311|gb|AAQ58677.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 441

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 160/371 (43%), Positives = 240/371 (64%), Gaps = 8/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLSP+++ A+ + GY +PTPIQ K IPLVL   D+   AQTGTGKTA+F+LP+L
Sbjct: 1   MLFSELGLSPEILRAIDEQGYSQPTPIQEKAIPLVLSGRDLLAAAQTGTGKTAAFMLPIL 60

Query: 61  TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L+K       P     R L+L PTRELA Q+  N + Y K   L    + GG+  + Q
Sbjct: 61  ERLKKFANTSVSPAMHPIRALVLSPTRELADQIGVNVQTYTKYLPLRATTVFGGVNMDPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L RG ++LI TPGR+LDH  +  + +N +E+LV+DE DRMLDMGFI  I+ I  ++P
Sbjct: 121 TQELRRGVEILIATPGRLLDHIQQKTVQLNKVEVLVLDEGDRMLDMGFIQDIRKIMGMLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT   E+++++ +F+  P+ +EV   ++T + +E           KK  LL
Sbjct: 181 KERQTLLFSATFAPEIKRLAADFMHAPQTVEVARQNATNDQVEQLVFQV--DNFKKRQLL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++S++ M   I+FC  K +   L   L++ G    AIHG+  Q +R++ L+ FKEG 
Sbjct: 239 AHLIRSRE-MSQVIVFCKTKISADQLARDLKRDGLDAEAIHGDKTQGARLETLAGFKEGK 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGLDI ++ +V NF++P   E+Y+HRIGRTGRAG  G A +L+  ++ +
Sbjct: 298 LRVLVATDVAARGLDISELPYVVNFELPTSPEDYVHRIGRTGRAGAKGIAISLMCPDESR 357

Query: 356 HIDAIEKLIEK 366
             +AIEKL ++
Sbjct: 358 QHEAIEKLTKQ 368


>gi|329891295|ref|ZP_08269638.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
 gi|328846596|gb|EGF96160.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
          Length = 589

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 159/374 (42%), Positives = 234/374 (62%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  +GL+  ++ A+   GY KPTPIQ K IP V++  D+ GIAQTGTGKTA+F LP+L
Sbjct: 4   ITFESMGLNKALLTALAATGYEKPTPIQAKAIPDVMKGKDLLGIAQTGTGKTAAFALPIL 63

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L + R   R R  R LIL PTRELA Q+ D+F++YG +    VA++ GG+ + AQ + 
Sbjct: 64  HRLAENRVAPRPRTTRALILSPTRELATQIGDSFKQYGAHLGFRVAVIFGGVKYGAQERA 123

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G DVL+  PGR+LDH  +  L ++  EI V+DEAD+MLD+GFI  I+ I S +P  R
Sbjct: 124 LQQGLDVLVAAPGRLLDHIQQKTLDLSTCEIFVLDEADQMLDLGFIKPIRQIVSRIPAKR 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L FSATM  E+ K++   L++P +++V   ++T E I+   +  + +  KK ALL +L
Sbjct: 184 QNLFFSATMPSEIGKLAGELLKDPVKVQVTPQATTVERIKQSVI--WVEQGKKRALLTEL 241

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S       ++F   K     +   LE  G    AIHGN  Q  R + L  FK G +++
Sbjct: 242 F-SDPAYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERALEAFKNGKLRV 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  V HV NF++P   E Y+HRIGRT RAG+ G A + VA +++K + 
Sbjct: 301 LVATDIAARGIDVDKVTHVVNFELPYVPEAYVHRIGRTARAGKDGTAISFVAGDEMKLLK 360

Query: 359 AIEKLIEKKVDWLN 372
            IEK+  +K+  ++
Sbjct: 361 DIEKVTRQKIPAID 374


>gi|153835022|ref|ZP_01987689.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
 gi|148868543|gb|EDL67640.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
          Length = 430

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 168/408 (41%), Positives = 250/408 (61%), Gaps = 15/408 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P+VV A+ + GY K TPIQ K IP+  + HD+   AQTGTGKTA+F LPM+
Sbjct: 1   MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMI 60

Query: 61  T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +LE GR+  R   R LI+ PTRELA Q+ADN + Y K  +L+VA + GG    +Q   
Sbjct: 61  QQLLESGRSASRKTARALIMAPTRELAEQIADNIKAYTKYTDLSVAAIFGGRKMSSQVTA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H  +G + + NIE LV DEADR+LDMGFI  ++ I   V    
Sbjct: 121 LEGGVDILVATPGRLEEHIEQGNVSVANIEFLVFDEADRILDMGFIHAVRKIMMDVDTDP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L  ++++ L+ PKRIEV   ++TA+TI H          +K  LL +L
Sbjct: 181 QIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAQTIAHVLYPV--DQERKTELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   K  ++F N K+   ++   L+  G      HG+  Q +R + L  FK G  ++
Sbjct: 239 I-GRKNWKQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V +E+   + 
Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVV 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPP-----LEKIDIA---QHNHARKNNP 398
            +E LI++++  +  +L+   P      +EK++     ++   R+NNP
Sbjct: 358 QVENLIQQRIRRI--ELAGYEPKQRESYIEKLNSKPAFKNRQGRRNNP 403


>gi|119471733|ref|ZP_01614093.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Alteromonadales bacterium TW-7]
 gi|119445356|gb|EAW26644.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Alteromonadales bacterium TW-7]
          Length = 465

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 156/365 (42%), Positives = 233/365 (63%), Gaps = 4/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AVL+ GY  PTPIQ + IP +++R DV   AQTGTGKTA F LP++
Sbjct: 1   MSFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLI 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G +A+    R LIL PTRELA QV++N E+Y K+ N++  ++ GG+    Q ++L
Sbjct: 61  ERLSTGPKAKSNHVRALILAPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR++D  N+  +  +++E+LV+DEADRMLDMGFI  I+ + + +P  RQ
Sbjct: 121 RKGVDILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +D+++ +++  + +P  I V   ++TA+++     A      +K ALL  L+
Sbjct: 181 NLMFSATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQSVYAV--DKGRKTALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +S D  +  ++F   K     L   LE+      AIHGN  Q +R+K L  FK G ++++
Sbjct: 239 RSND-WQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLDI ++ HV N+D+PN  E+Y+HRIGRTGRAG  G A + V  +D   +  
Sbjct: 298 VATDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTVDDAVDLYG 357

Query: 360 IEKLI 364
           IE+ I
Sbjct: 358 IERFI 362


>gi|254473978|ref|ZP_05087371.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
 gi|211956867|gb|EEA92074.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
          Length = 483

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 169/398 (42%), Positives = 247/398 (62%), Gaps = 12/398 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F + GL+  ++ AV + GY  PTPIQ + IPL+ +  D+ GIAQTGTGKTA+FVLP+LT
Sbjct: 3   NFDEAGLAEPILRAVKEEGYEAPTPIQREVIPLMKEGEDILGIAQTGTGKTAAFVLPLLT 62

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L + R +      R LIL PTRELA+Q+A++   YG+    +VA++ GG+    Q + L
Sbjct: 63  RLAEDRKKPAPHTCRALILAPTRELASQIAESVRTYGQFIGPSVAVIFGGVKPGPQLRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D++I TPGR+ DH + G + ++    +V+DEAD+MLD+GF P I+ I   +P  RQ
Sbjct: 123 SKGLDIVIATPGRLEDHMSTGGIKLDATTTVVLDEADQMLDLGFAPAIRRILGKLPKVRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+L SATM  +++ +++ FL NP  I V   S   E I+   V      SK+ ALL  L 
Sbjct: 183 TVLLSATMPIQIRNLAKEFLSNPHEISVAPVSRPIEKIDQS-VRFLNSSSKRAALLDIL- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+D ++  I+F   K+    +   LEK G S  AIHGN  QR+R K L  FK G I+++
Sbjct: 241 -SEDDIERAIVFTRTKRGADRVSGHLEKAGLSSAAIHGNKSQRNREKSLDGFKNGRIKIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  V HV N+++PN  E Y+HRIGRT RAG+ G A +L    +  ++  
Sbjct: 300 VATDIAARGIDIDGVSHVVNYELPNVPEAYVHRIGRTARAGKSGVAVSLCDATEQPYLRD 359

Query: 360 IEKLIEKKV-----DW--LNGDLSSLNPPLEKIDIAQH 390
           IE+LI +K+     DW   +GD+S+ +P  E   + +H
Sbjct: 360 IERLIGRKIPSGDSDWDGASGDVSTFDPTAEPQRLKRH 397


>gi|298207628|ref|YP_003715807.1| putative ATP-dependent RNA helicase [Croceibacter atlanticus
           HTCC2559]
 gi|83850264|gb|EAP88132.1| putative ATP-dependent RNA helicase [Croceibacter atlanticus
           HTCC2559]
          Length = 424

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 177/426 (41%), Positives = 251/426 (58%), Gaps = 18/426 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL +   ++ ++ + GY KPT IQ ++IPL+L+  DV G AQTGTGKT +F +P++
Sbjct: 1   MTFEDLNIISPILKSLDEQGYEKPTSIQARSIPLILKGEDVLGSAQTGTGKTGAFAIPII 60

Query: 61  TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L       +  R   +LI+ PTRELA Q+ +NF  YGK  +L   ++ GG+P  AQ  
Sbjct: 61  QHLANDLENAKGKRKILSLIVTPTRELAIQIGENFSAYGKYTSLKSTVIFGGVPQRAQTN 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G DVLI TPGR+LD  ++G + + +++  V+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLKSGVDVLIATPGRLLDLMDQGYISLKDVKYFVLDEADRMLDMGFIHDIKKLLTKLPKN 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+L FSATM   +  +S   L+NPK++EVN  SSTAETI+     T    + K  LL  
Sbjct: 181 RQSLFFSATMPKNILTLSNQILKNPKKVEVNPVSSTAETIQQYLYTT--NKTNKGDLLLH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+    +   ++F   K         L K+     AIHGN  Q  R K L  FK+G I+
Sbjct: 239 ILEDP-KIDQVLVFSKTKHGADRTVRKLLKKKIKSAAIHGNKSQNQRQKALKAFKDGNIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MVA+D+AARG+DI  + +V N+D+PN  E Y+HRIGR GRAG  G A ++   E+I+ I
Sbjct: 298 VMVATDIAARGIDIDKLEYVINYDIPNEPETYVHRIGRCGRAGEDGIAISIGEPEEIQFI 357

Query: 358 DAIEKLIEKKVDWLNGD-LSSLNPPL----------EKIDIAQHNHA-RKNNPIPQKSTG 405
             IEKLI++K+  +  +     + P+          EK  I Q   A RK N   QK  G
Sbjct: 358 KDIEKLIKQKITVIKDNPFPQTDKPMTTSEKKAAEKEKQRIKQEFFANRKKNKGSQKGGG 417

Query: 406 FDRRKK 411
            +RRKK
Sbjct: 418 NNRRKK 423


>gi|209886522|ref|YP_002290379.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
           carboxidovorans OM5]
 gi|209874718|gb|ACI94514.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
           carboxidovorans OM5]
          Length = 512

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 164/364 (45%), Positives = 225/364 (61%), Gaps = 5/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL+  +  A+ +  YV PTPIQ +TIP+ +   DV GIAQTGTGKTASF LP+L  
Sbjct: 4   FQDFGLAETITRALSEENYVTPTPIQAQTIPIAITGRDVIGIAQTGTGKTASFALPILHR 63

Query: 63  LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L + R R   +  R L+L PTREL+ Q+ D+F  YG++  L+  L IGG+P   Q + L 
Sbjct: 64  LLENRVRPQPKTCRVLVLSPTRELSGQILDSFTAYGRHLRLSATLAIGGVPMGRQVRALM 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G +VL+ TPGR+LD      L +  +E LV+DEADRMLDMGFI  I+ I + +P  RQT
Sbjct: 124 GGVEVLVATPGRLLDLVQGNALKLGQVEFLVLDEADRMLDMGFIHDIRKIVAKLPHRRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  ++  ++E+ L+ P R+ V   SST E I    +      S K A L +LL+
Sbjct: 184 LFFSATMPKDIADLAEHMLREPARVAVTPVSSTVERIAQRII--QLDSSAKPATLSELLK 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S + +   ++F   K     +  SL K G    AIHGN  Q  R ++L+ F+ G I+ +V
Sbjct: 242 S-EPVNRALVFTRTKHGADKVVRSLVKAGIPAEAIHGNKSQNHRERVLAAFRNGDIRTLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV NFD+PN  E Y+HRIGRT RAG  G A +LVA E+  ++  I
Sbjct: 301 ATDIAARGIDVDGITHVVNFDLPNVPETYVHRIGRTARAGAEGTAISLVAGEENAYLRDI 360

Query: 361 EKLI 364
           E+LI
Sbjct: 361 ERLI 364


>gi|149199772|ref|ZP_01876803.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa
           HTCC2155]
 gi|149137177|gb|EDM25599.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa
           HTCC2155]
          Length = 437

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 162/370 (43%), Positives = 240/370 (64%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL  +++  +   GY +PTPIQ + IP++L+  D+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFENLGLRTEILTGIKFQGYTQPTPIQEQAIPIILKGGDILAGAQTGTGKTAAFTLPIL 60

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L     R    PR L+L PTRELAAQV ++ E YGK  ++   ++ GG+    Q +KL
Sbjct: 61  HLLSTADNRGGHRPRALVLTPTRELAAQVGESVELYGKGLDIRSTVIFGGVGINPQKQKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+++ TPGR+LD   +  L ++ IE L++DEADRMLDMGFI  I+ I  LVP  RQ
Sbjct: 121 RKGVDIVVGTPGRLLDLAGQKALDLSRIEYLILDEADRMLDMGFIHDIKKIIKLVPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSAT + +++ +SE+ L+NP  +EV   +++AET++      +   +KK  LL  L+
Sbjct: 181 TLFFSATYSKDIKALSESILRNPSLVEVARQNTSAETVDQSVY--HVGKNKKRNLLSSLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +     ++F   K     L + L   G +  AIHGN  Q +R + L++FK   ++++
Sbjct: 239 RDGE-WNQVLVFTRTKHGANKLTNMLIADGITAAAIHGNKSQNARTRALADFKAIKVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV N+++P  AE+Y+HRIGRTGRAG  G+A +LVAKE+   + A
Sbjct: 298 VATDIAARGIDIDRLPHVVNYELPEIAEDYVHRIGRTGRAGCSGEAISLVAKEEASLLFA 357

Query: 360 IEKLIEKKVD 369
           IEKLI KKV+
Sbjct: 358 IEKLINKKVN 367


>gi|168178014|ref|ZP_02612678.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum NCTC 2916]
 gi|182671239|gb|EDT83213.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum NCTC 2916]
          Length = 425

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 164/371 (44%), Positives = 240/371 (64%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   +  A+ + GY K TPIQ K+IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVL 60

Query: 61  TILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L K +   + P   R L+L PTRELA Q+ ++FE YGK  NL  A++ GG+    Q K
Sbjct: 61  QNLSKDKKANKNPKPIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+LI TPGR+LD FN+  + + NIE  V+DEADRMLDMG I  ++ I S +P  
Sbjct: 121 VLREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKI 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  E+ K+ ++ +++P R+EV   SST +TI       + +  +K +LL+ 
Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVY--HVRKKQKRSLLKH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ + ++++ ++F   K+    +   L + G    AIHGN  Q +R + L+NFKEG I+
Sbjct: 239 LLRDK-SIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HVFN+++P+  E Y+HRIGRTGRAG  G A +    E+ K +
Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357

Query: 358 DAIEKLIEKKV 368
            AIEKLI K++
Sbjct: 358 KAIEKLINKEI 368


>gi|145298914|ref|YP_001141755.1| ATP-dependent RNA helicase RhlE [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851686|gb|ABO90007.1| ATP-dependent RNA helicase RhlE [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 467

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 166/371 (44%), Positives = 237/371 (63%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL+  ++ AV + GY  P+PIQ++ IP VL   D+   AQTGTGKTA F LPML
Sbjct: 1   MSFSSLGLAEPLLRAVAEQGYDTPSPIQLQAIPAVLAGRDLMAAAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L + + +V   R+ R L+L PTRELAAQV ++   YGK+  +   ++ GG+    Q  
Sbjct: 61  QRLMESKRKVSPNRI-RALVLTPTRELAAQVGESVRNYGKHLPMRSHVVFGGVSINPQMM 119

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              RG DVL+  PGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I +L+P  
Sbjct: 120 ATRRGLDVLVACPGRLMDLYNQNAVKFDEVEILVLDEADRMLDMGFIRDIRKILALMPKQ 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT  +E+++++   L NP  IEV   +STAE IE   +      + K  LL  
Sbjct: 180 RQNLLFSATFAEEIRELATGLLNNPAVIEVAPRNSTAERIEQ--LVHPCDKANKIGLLSH 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ S D  +  ++F   K     +  +L+K G S  AIHGN  Q +R + L+ FK+G ++
Sbjct: 238 LVTSND-WQQVLVFTRTKHMANRVAETLDKNGVSAAAIHGNKSQGARTRALAGFKDGNVK 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  +  V NF++PN AE+Y+HRIGRTGRAG  G A +LVA ++ K I
Sbjct: 297 VLVATDIAARGLDIDKLPQVVNFELPNVAEDYVHRIGRTGRAGAAGHAISLVAADEGKLI 356

Query: 358 DAIEKLIEKKV 368
            AIE+L ++ +
Sbjct: 357 KAIERLTKQNI 367


>gi|194337138|ref|YP_002018932.1| DEAD/DEAH box helicase domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309615|gb|ACF44315.1| DEAD/DEAH box helicase domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 418

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 162/370 (43%), Positives = 234/370 (63%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  L +   ++ A+ + GY  PTPIQ + IP++LQ  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MEFKSLEIIDPILQALQEEGYTTPTPIQAEAIPIILQGTDLLGCAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L + +   + R  RTLI+ PTRELA Q+ ++F  YG++  LT  ++ GG+    Q   
Sbjct: 61  QLLSENKVYDKKRKIRTLIVTPTRELAIQIGESFNAYGRHTGLTNTVIFGGVNQNPQTAA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D++I TPGR+LD  N+G L + ++EILV+DEADRMLDMGFI  I+ I ++VP  +
Sbjct: 121 LIRGVDIVIATPGRLLDLLNQGFLSLRHVEILVLDEADRMLDMGFIHDIKKILAVVPKQK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+ K++   L NP ++ V   SST E I       +     K +LL  +
Sbjct: 181 QSLFFSATMPAEIVKLAATILHNPSKVSVTPVSSTVEIINQSIY--FVDKGNKNSLLVDI 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ Q  +K  ++F   K     +   LEK      AIHGN  Q +R + L NFK  T ++
Sbjct: 239 LRDQ-AIKTALVFTRTKHGADKVVKILEKHNIKAEAIHGNKAQNARQRALFNFKAQTTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+ +V NF++PN AE Y+HRIGRTGRAG  G A +    E+ +++ 
Sbjct: 298 LVATDIAARGIDVDDLEYVINFEMPNIAETYVHRIGRTGRAGAKGTALSFCDAEEKEYLR 357

Query: 359 AIEKLIEKKV 368
            IEKLI KK+
Sbjct: 358 DIEKLIAKKI 367


>gi|114046738|ref|YP_737288.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113888180|gb|ABI42231.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 409

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 173/404 (42%), Positives = 250/404 (61%), Gaps = 12/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L  ++V  + + GY++PTPIQ++ IP +L + DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFSALSLHSQLVNTLAELGYLQPTPIQVEAIPAILAKQDVMAGAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L         P   R L+L PTRELA QV  +F KY K  ++ V +  GG+  EAQ  
Sbjct: 61  QQLLLDNESQDAPKDIRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           + + G DVLI TPGR+LDH  +G L +  + +LV DEADRMLDMGF+  I+ +   VP  
Sbjct: 121 EFKAGVDVLIATPGRLLDHLRQGVLNLKYLSVLVFDEADRMLDMGFMDEIKAVLKQVPAQ 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT+ D +   S+N L++PK IEV   ++TA  +E    A  +   +K   +  
Sbjct: 181 RQTLLFSATLDDSIFGFSKNLLRDPKLIEVAKRNTTAAQVEQRVYAIDS--DRKTEFVSH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++S++  +  +IF   K+ V  L   L + G +  A HG++ Q +R K+L +FK+G +Q
Sbjct: 239 LVRSKN-WQQVLIFSRTKQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLVQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI D+ +V NF++P  AE+YIHRIGRTGRAG  G A TL ++ED   +
Sbjct: 298 VLVATDVAARGLDIADLQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLL 357

Query: 358 DAIEKLIEKKV--DWLNG---DLSSLNP-PLEKIDIAQHNHARK 395
           + +E L++K++   W  G   D + + P P      AQ   A+K
Sbjct: 358 EEVEALLDKRLPQQWYPGFEPDFNKMEPEPRRNSKAAQKQRAKK 401


>gi|209518298|ref|ZP_03267123.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209501217|gb|EEA01248.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 443

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 174/408 (42%), Positives = 246/408 (60%), Gaps = 18/408 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSEPLVRAVNELGYTSPTPIQTQAIPAVLDGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L          R+ R LIL PTRELAAQV ++   YGK   L   ++ GG+    Q  
Sbjct: 61  QRLNSMPPAAGGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQID 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+RG D+++ TPGR+LDH  +  + ++++EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 ALKRGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAET+            +K  LL  
Sbjct: 181 RQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKI--HPVDRDRKRELLTH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + L+ FK+GT+Q
Sbjct: 239 LIRQHNWFQV-LVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++++ +
Sbjct: 298 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
             IEKLI++ V            P E I   + +   K  PI ++S G
Sbjct: 358 KDIEKLIKRPV------------PQEVIAGFEPDPTAKPEPIQRRSQG 393


>gi|117919611|ref|YP_868803.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117611943|gb|ABK47397.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 409

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 174/404 (43%), Positives = 249/404 (61%), Gaps = 12/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L  ++V  + + GY +PTPIQI+ IP +L + DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFSALSLHSQLVNTLAELGYQQPTPIQIEAIPAILAKQDVMAGAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L         P   R L+L PTRELA QV  +F KY K  ++ V +  GG+  EAQ  
Sbjct: 61  QQLLIDNESQDAPKDVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           + + G DVLI TPGR+LDH  +G L +  + +LV DEADRMLDMGF+  I+ +   VP  
Sbjct: 121 EFKAGIDVLIATPGRLLDHLRQGALNLKRLSVLVFDEADRMLDMGFMDEIKAVLKQVPAQ 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT+ D +   S+N L++PK IEV   ++TA  +E    A  +   +K   +  
Sbjct: 181 RQTLLFSATLDDSIFGFSKNLLRDPKLIEVAKRNTTAAQVEQRVYAIDS--DRKTEFVSH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++S++  +  +IF   K+ V  L   L + G +  A HG++ Q +R K+L +FK+G +Q
Sbjct: 239 LVRSKN-WQQVLIFSRTKQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLVQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI D+ +V NF++P  AE+YIHRIGRTGRAG  G A TL ++ED   +
Sbjct: 298 VLVATDVAARGLDIADLQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLL 357

Query: 358 DAIEKLIEKKV--DWLNG---DLSSLNP-PLEKIDIAQHNHARK 395
           + +E L++K++   W  G   D + + P P      AQ   A+K
Sbjct: 358 EEVEALLDKRLPQQWYPGFEPDFNKMEPEPRRNSKAAQKQRAKK 401


>gi|329906289|ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547309|gb|EGF32148.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
          Length = 504

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 169/391 (43%), Positives = 240/391 (61%), Gaps = 9/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D GLS +++ A+ D GY  PTPIQ   IP+VLQ  DV G AQTGTGKTA F LP++
Sbjct: 16  LRFEDFGLSAEILRALADQGYDHPTPIQAAAIPVVLQGRDVMGAAQTGTGKTAGFSLPII 75

Query: 61  TIL----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +L        +  R P R LIL PTRELA QVA+N + Y ++  L   ++ GG+    Q
Sbjct: 76  QLLLANASNSASPARHPVRALILTPTRELADQVAENVKAYCRHTPLRSTVVFGGMDMAPQ 135

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G +++I TPGR+LDH  +  L ++  +ILV+DEADRMLDMGF+P +Q I +L+P
Sbjct: 136 TAALRAGVEIVIATPGRLLDHVQQKTLNLSQTQILVMDEADRMLDMGFLPDLQRIINLLP 195

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ L+FSAT + E++K++ +FL NP  IEV   + TA+ +        +  +K+  ++
Sbjct: 196 KKRQNLMFSATFSGEIKKLASSFLDNPVTIEVARSNQTADRVTQVVYKVDSDDAKRD-IV 254

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++ +  +K  ++F N K     L   LEK G    AIHG+  Q  RM  L  FK G 
Sbjct: 255 AHLIRGRQ-LKQVLVFSNTKIGASRLARELEKGGVKASAIHGDKTQSERMAALEAFKGGE 313

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+AARGLDI D+  V N+D+P  AE+Y+HRIGRTGRAG  G A +L   +D +
Sbjct: 314 IDVLVATDVAARGLDISDLPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFTTKDER 373

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
            +  IEKLI  K  ++  +L    PP+E+ +
Sbjct: 374 LLLDIEKLINHK--FVPAELVGYTPPVERAE 402


>gi|169831556|ref|YP_001717538.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638400|gb|ACA59906.1| DEAD/DEAH box helicase domain protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 533

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 154/369 (41%), Positives = 237/369 (64%), Gaps = 10/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+SP+++ AV D G+ +P+PIQ++TIP +L   D+ G AQTGTGKTA+F +P+L  
Sbjct: 10  FADLGVSPEILRAVDDMGFEEPSPIQLQTIPQLLDGRDLVGQAQTGTGKTAAFAIPLLMR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   AR   P+ L++ PTRELA QVA+ F + G+  N  V  + GG     Q K L+RG
Sbjct: 70  LQ---ARRGWPQVLVMTPTRELAIQVAEEFARVGRYTNTRVLPVYGGQSIGRQIKTLQRG 126

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR+LDH NR  L +  ++ +V+DEAD MLDMGFI  I++I +  P +RQTLL
Sbjct: 127 VDVVVGTPGRVLDHLNRKTLRLEQLQAVVLDEADEMLDMGFIDDIESILNATPPSRQTLL 186

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLLQ 240
           FSAT+   + +++E +++ P  + +N     A  I   +  +         C +L     
Sbjct: 187 FSATIPGPIARLAEKYMRTPVHVSINPEYVAAPDIWQVYYELRNIDHLEALCRIL----- 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + ++  IIFC  K+ V  L  +L  +G+S   IHG+++Q  R +++  F+EG I L+V
Sbjct: 242 DAEAVERAIIFCRTKRRVDELAEALRSRGYSADHIHGDLEQNQRNRVMGAFREGEIDLLV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HV N+D P   E+Y+HRIGRTGRAGR G A TLV  +++  +  I
Sbjct: 302 ATDVAARGIDVQNISHVINYDCPQDPESYVHRIGRTGRAGRTGTAITLVYPKELPLLRTI 361

Query: 361 EKLIEKKVD 369
           ++L++ +++
Sbjct: 362 QRLVKVRIE 370


>gi|17546930|ref|NP_520332.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
 gi|17429230|emb|CAD15918.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
           GMI1000]
          Length = 495

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 166/373 (44%), Positives = 237/373 (63%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL P ++ A+ ++GY + TPIQ   IP+V+   DV G AQTGTGKTA F LP++  
Sbjct: 17  FDTFGLHPDILRALAESGYTRATPIQAAAIPVVIAGRDVMGAAQTGTGKTAGFSLPIIQN 76

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QV DN  KY K+  L  A++ GG+    Q +
Sbjct: 77  LLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKHTALRSAVVFGGVDMNPQTE 136

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG +VL+ TPGR+LDH  +  + ++ + +LV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 137 QLRRGVEVLVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAH 196

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++ ++L++P+ IEV   ++TA+ +    + T     K+ AL+  
Sbjct: 197 RQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQV-IYTVPDGHKQAALVHL 255

Query: 238 LLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L Q   Q      I+F N K     L  +LE++  +  AIHG+  Q  RM+ L  FK+GT
Sbjct: 256 LRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQTERMQTLEAFKQGT 315

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGLDI  +  V NFD+P  AE+Y+HRIGRTGRAG  G A +L A  D +
Sbjct: 316 VDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDER 375

Query: 356 HIDAIEKLIEKKV 368
            +  IEKLI++ +
Sbjct: 376 LLADIEKLIKRNL 388


>gi|83310527|ref|YP_420791.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
 gi|82945368|dbj|BAE50232.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
           AMB-1]
          Length = 476

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 164/368 (44%), Positives = 235/368 (63%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL+  ++ A+   GY  PTPIQ ++IP +LQ  DV G+AQTGTGKTASF LP+L  
Sbjct: 5   FSELGLAEPLLKALEAEGYTTPTPIQEQSIPHLLQGSDVLGLAQTGTGKTASFALPLLQR 64

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L+  K RA  +  R L+L PTRELA QV  +F+ YG +Y L  AL+ GG+    Q K + 
Sbjct: 65  LDQFKKRAMPKSCRILVLTPTRELAVQVGQSFKTYGCHYRLRHALVFGGVGMVPQIKTMA 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVL+ TPGR+LD   +G + ++++E LV+DEADRMLDMGFI  I+ I +LVP  RQT
Sbjct: 125 GGVDVLVATPGRLLDLIEQGAIRLDSVEALVLDEADRMLDMGFIQPIRKIVALVPKQRQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM D +  ++ + L  P R+EV   SST + I+   +  +     K  LL  +L 
Sbjct: 185 VLFSATMPDSIVGLANSVLHTPVRVEVTPVSSTVDKIDQKVL--FVDREHKRTLLTDILA 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D  +  ++F   K     +   LEK G    AIHGN  Q +R K L++F++G I+ +V
Sbjct: 243 GKDVGR-ALVFTRTKHGANRVVELLEKAGIDADAIHGNKSQGARQKALADFRDGRIKALV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV NF++PN  E+Y+HRIGRT RAG  G A +L   +++ ++  I
Sbjct: 302 ATDIAARGIDVDGITHVINFELPNEPESYVHRIGRTARAGASGIALSLCDGDEVAYLRDI 361

Query: 361 EKLIEKKV 368
           EK I + +
Sbjct: 362 EKTIRQAI 369


>gi|308272082|emb|CBX28690.1| ATP-dependent RNA helicase rhlE [uncultured Desulfobacterium sp.]
          Length = 398

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 161/370 (43%), Positives = 240/370 (64%), Gaps = 8/370 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F    L+P +   + DAG+V PTPIQ K IPLV+   D+ G+AQTGTGKTA+FVLP+L
Sbjct: 1   MEFKTFNLNPDIEAGIADAGFVTPTPIQTKAIPLVMDGQDIMGLAQTGTGKTAAFVLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G R  VR   +LI+ PTRELA Q+ D+    GK+  +    + GG+    Q +KL
Sbjct: 61  HRLIQGKRGHVR---SLIIAPTRELAEQIHDDINTLGKDTRIRSVTVYGGVNINTQIQKL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA++++  PGR+LDH  R  + +  +E+LVIDEAD M DMGF+P I+ I   +P  RQ
Sbjct: 118 KRGAEIVVACPGRLLDHMTRKTIDLTRVEVLVIDEADHMFDMGFLPDIRRILKHLPAQRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM DE++ ++++ L++P  I+V + +  A+T+ H      AQ+  K A L +LL
Sbjct: 178 TLLFSATMPDEIKSLAKDILKDPITIKV-SETVPADTVSHAHYPV-AQHL-KTAFLLKLL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  ++ K+ ++F   K    +L   L K GF   ++ GN+ Q  R   L  F+ G IQ++
Sbjct: 235 EHINS-KSVLVFTRTKHRAKHLDEQLAKAGFRSASLQGNLSQVRRQAALDGFRNGRIQVL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HV N+D+P+  + YIHRIGRTGRA + G AFTL+  ED K ++ 
Sbjct: 294 VATDIAARGIDVCKISHVINYDIPDTPDAYIHRIGRTGRADQSGDAFTLITSEDKKMVNI 353

Query: 360 IEKLIEKKVD 369
           I+++I  K++
Sbjct: 354 IDRVIGSKIE 363


>gi|56460652|ref|YP_155933.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
 gi|56179662|gb|AAV82384.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 416

 Score =  313 bits (802), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 173/416 (41%), Positives = 247/416 (59%), Gaps = 16/416 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  ++ AV + GY  PTPIQ + IP V+  HD+   AQTGTGKTA F LP+L  
Sbjct: 10  FQSLGLSDDILRAVTECGYTTPTPIQQQAIPTVMAGHDLLAAAQTGTGKTAGFTLPLLHK 69

Query: 63  LEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +   + + + LIL PTRELAAQV DN   Y K   L   ++ GG+    Q   L R
Sbjct: 70  LSQTKTDGKPVIKALILTPTRELAAQVEDNLNTYAKYTGLKSLVIFGGVGINPQISALRR 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+L+ TPGR+LDH  +G + ++ I++L++DEADRMLDMGFI  I+ +  L+P  RQTL
Sbjct: 130 GVDILVATPGRLLDHSRQGTVDLSKIDVLILDEADRMLDMGFIHDIKKVMKLIPEKRQTL 189

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT + E++ +S+ F+Q PK IEV   ++ A+TIE           +K  LL  L+ S
Sbjct: 190 LFSATFSSEIKALSQQFMQQPKLIEVARQNAAADTIEQRVYPV--DKKRKRELLSYLIGS 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++  +  ++F   K     L   L   G    AIHGN  Q +R K L+ FK G ++++VA
Sbjct: 248 RN-WRQVLVFTRTKHGANRLATQLTDDGLPAMAIHGNKSQGARTKALAQFKAGKLRVLVA 306

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV NF++P  AE+Y+HRIGRTGRAG  G+A +LV  ++ K +  IE
Sbjct: 307 TDIAARGIDIDELPHVINFELPQVAEDYVHRIGRTGRAGSEGEAASLVCVDEHKLLRDIE 366

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           KL + ++            P E I   + + + K  PI +  TG  +  +    QK
Sbjct: 367 KLTKNEI------------PREVIPGFEPDPSIKPEPIQKPRTGRPQNSRRAPRQK 410


>gi|117621566|ref|YP_856876.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117562973|gb|ABK39921.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 466

 Score =  313 bits (802), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 167/371 (45%), Positives = 237/371 (63%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY  P+PIQ + IP VL   D+   AQTGTGKTA F LPML
Sbjct: 1   MSFTSLGLAEPLLRAVAEQGYDTPSPIQQQAIPAVLAGRDLMAAAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L + + +V   R+ R L+L PTRELAAQV ++   YGK+  +   ++ GG+    Q  
Sbjct: 61  QRLTESKRKVSPNRI-RALVLTPTRELAAQVGESVRNYGKHLPIRSHVVFGGVSINPQMM 119

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              RG DVL+  PGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I +L+P  
Sbjct: 120 ATRRGLDVLVACPGRLMDLYNQNAVKFDEVEILVLDEADRMLDMGFIRDIRRILALLPKK 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT  DE+++++   L NP  IEV   +STAE IE   +      + K ALL  
Sbjct: 180 RQNLLFSATFADEIRELATGLLDNPAVIEVAPRNSTAERIEQ--LVHPCDKANKIALLSH 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ S +  +  ++F   K     +  +L+K G S  AIHGN  Q +R + L+ FK+G+++
Sbjct: 238 LVTS-NNWQQVLVFTRTKHMANRVAETLDKNGVSAAAIHGNKSQGARTRALAGFKDGSVK 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  +  V NF++PN AE+Y+HRIGRTGRAG  G A +LVA ++ K I
Sbjct: 297 VLVATDIAARGLDIDKLPQVVNFELPNVAEDYVHRIGRTGRAGAAGHAISLVAADEGKLI 356

Query: 358 DAIEKLIEKKV 368
            AIE+L ++ +
Sbjct: 357 KAIERLTKQNI 367


>gi|330829717|ref|YP_004392669.1| ATP-dependent RNA helicase RhlE [Aeromonas veronii B565]
 gi|328804853|gb|AEB50052.1| ATP-dependent RNA helicase RhlE [Aeromonas veronii B565]
          Length = 466

 Score =  313 bits (802), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 166/370 (44%), Positives = 235/370 (63%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY  P+PIQ + IP VL   D+   AQTGTGKTA F LPML
Sbjct: 1   MSFTSLGLAEPLLRAVAEQGYDTPSPIQQQAIPAVLAGRDLMAAAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L + + +V     R L+L PTRELAAQV ++   YGK+  +   ++ GG+    Q   
Sbjct: 61  QRLMESKRKVSPNRVRALVLTPTRELAAQVGESVRNYGKHLPMRSHVVFGGVSINPQMMA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             RG DVL+  PGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I +L+P  R
Sbjct: 121 TRRGLDVLVACPGRLIDLYNQNAVKFDEVEILVLDEADRMLDMGFIRDIRRILALMPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT  DE+++++   L NP  IEV   +STAE IE   +      + K ALL  L
Sbjct: 181 QNLLFSATFADEIRELATGLLDNPAVIEVAPRNSTAERIEQ--LVHPCDKANKIALLSHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S +  +  ++F   K     +  +L+K G S  AIHGN  Q +R + L+ FK+G++++
Sbjct: 239 VTS-NNWQQVLVFTRTKHMANRVAETLDKNGVSAAAIHGNKSQGARTRALAGFKDGSVKV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  +  V NF++PN AE+Y+HRIGRTGRAG  G A +LVA ++ K I 
Sbjct: 298 LVATDIAARGLDIDKLPQVVNFELPNVAEDYVHRIGRTGRAGAAGHAISLVAADEGKLIK 357

Query: 359 AIEKLIEKKV 368
           AIE+L ++ +
Sbjct: 358 AIERLTKQSI 367


>gi|307730917|ref|YP_003908141.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307585452|gb|ADN58850.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
          Length = 517

 Score =  313 bits (802), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 167/373 (44%), Positives = 233/373 (62%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L         +  R  R LIL PTRELAAQV ++   YGK   L   ++ GG+    Q
Sbjct: 61  QRLHSMPPVAAASGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G D+++ TPGR+LDH  +  + ++++EILV+DEADRMLDMGFI  I+ + + +P
Sbjct: 121 IGALKSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT +DE++ +++N L +P  IEV   ++TAET+            KK  LL
Sbjct: 181 PKRQNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAETVAQKIHPV--DRDKKRELL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + L+ FK+GT
Sbjct: 239 THLIKQHNWFQV-LVFTRTKHGANRLAEQLSKDGISALAIHGNKSQSARTRALAEFKDGT 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++++
Sbjct: 298 LQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQ 357

Query: 356 HIDAIEKLIEKKV 368
            +  IEKLI++ V
Sbjct: 358 LLKDIEKLIKRPV 370


>gi|75908173|ref|YP_322469.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC
           29413]
 gi|75701898|gb|ABA21574.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC
           29413]
          Length = 426

 Score =  313 bits (802), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 165/375 (44%), Positives = 237/375 (63%), Gaps = 8/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS +++ AV + GY KPTPIQ+++IP VL   D+   AQTGTGKTASF LP+L
Sbjct: 1   MSFSHLGLSNEIIRAVTELGYTKPTPIQMQSIPAVLSGRDLLAGAQTGTGKTASFTLPLL 60

Query: 61  TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +L +   +         R LIL PTRELAAQV  +   YGK  NL   ++ GG+    Q
Sbjct: 61  HLLSQDSLKSASSPSSPIRALILTPTRELAAQVESSVRDYGKYLNLNSMVMFGGVSINPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L+   D+L+ TPGR+LDH  +G + ++ IEILV+DEADRMLDMGFI  I+ I SL+P
Sbjct: 121 KQRLKGRVDILVATPGRLLDHVQQGTVNLSQIEILVLDEADRMLDMGFIRDIRRILSLLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLF AT +D++++++   L  P+ IEV   + TA+T+         +  +K  LL
Sbjct: 181 KQRQNLLFFATFSDKIKELAAGLLNRPQMIEVARRNVTADTVTQKVYKI--ERDRKRDLL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++ +D     ++F   K     L   L  +     AIHGN  Q +R   L+ FK G+
Sbjct: 239 AHLIR-KDNWYQVLVFTRTKYGADRLVKQLGHERIQALAIHGNKSQSARTHALAKFKNGS 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARGLDI ++ +V NFD+P   E+Y+HRIGRTGRAG  G+A +LV+ ++  
Sbjct: 298 LQVLVATDIAARGLDISELPYVVNFDLPYVPEDYVHRIGRTGRAGASGEAVSLVSADEYH 357

Query: 356 HIDAIEKLIEKKVDW 370
            +  IEKLIEK++ +
Sbjct: 358 LLADIEKLIEKRLPF 372


>gi|295677616|ref|YP_003606140.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
 gi|295437459|gb|ADG16629.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 518

 Score =  313 bits (801), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 167/371 (45%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSEPLVRAVNELGYTSPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L          R+ R LIL PTRELAAQV ++   YGK   L   ++ GG+    Q  
Sbjct: 61  QRLNSMAPAAGGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQID 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+RG D+++ TPGR+LDH  +  + ++++EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 ALKRGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAET+            +K  LL  
Sbjct: 181 RQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPV--DRDRKRELLTH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++ Q +    ++F   K     L   L K G S  AIHGN  Q +R + L+ FK+GT+Q
Sbjct: 239 LIR-QHSWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++++ +
Sbjct: 298 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLL 357

Query: 358 DAIEKLIEKKV 368
             IEKLI++ V
Sbjct: 358 KDIEKLIKRPV 368


>gi|315126209|ref|YP_004068212.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315014723|gb|ADT68061.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 465

 Score =  313 bits (801), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 156/365 (42%), Positives = 234/365 (64%), Gaps = 4/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AVL+ GY  PTPIQ + IP ++ R DV   AQTGTGKTA F LP++
Sbjct: 1   MSFDGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIARRDVMAAAQTGTGKTAGFTLPLI 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G +A+    R LIL PTRELA QV++N E+Y K+ +++  ++ GG+    Q ++L
Sbjct: 61  ERLSSGTKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR++D  N+  +  ++IE+LV+DEADRMLDMGFI  I+ + + +P  RQ
Sbjct: 121 RKGVDILVATPGRLIDLHNQNAVKFDSIEVLVLDEADRMLDMGFIHDIKRLIAKMPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +D+++ +++  + +P  I V   ++TA+++  C  A     ++K ALL  L+
Sbjct: 181 NLMFSATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAV--DKARKTALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +S +  +  ++F   K     L   LE+      AIHGN  Q +R+K L  FK G ++++
Sbjct: 239 RS-NNWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALEGFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLDI ++ HV N+D+PN  E+Y+HRIGRTGRAG  G A + V  +D   +  
Sbjct: 298 VATDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTVDDAVDLYG 357

Query: 360 IEKLI 364
           IE+ I
Sbjct: 358 IERFI 362


>gi|118578871|ref|YP_900121.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118501581|gb|ABK98063.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
           2379]
          Length = 454

 Score =  313 bits (801), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 160/374 (42%), Positives = 233/374 (62%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AV   GY  PTPIQ + IP+V+   D+   AQTGTGKTA+FVLP L
Sbjct: 1   MTFEELNLTPAILKAVTACGYTTPTPIQQQAIPVVMTGSDLIATAQTGTGKTAAFVLPAL 60

Query: 61  TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L        + PR L+L PTRELA Q  D    YG+   L    ++GG+P+  Q + L
Sbjct: 61  QRLSTPSSVPGKGPRVLVLTPTRELAGQCIDAARSYGRGARLRCGSILGGMPYREQLRLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR+LDH  RG + +N +E+LV+DEADRMLDMGF   ++ I S  P  RQ
Sbjct: 121 SAPVDLIVATPGRLLDHLERGSIALNRLEMLVLDEADRMLDMGFSEDMEKIVSAAPQERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQL 238
           TL+F+ATM   + K++E  L+NP+RIE+   +S+ E IE    VA    + K+  LL+ L
Sbjct: 181 TLMFTATMGTTVLKLAEKMLRNPQRIELAVRTSSHELIEQRLHVADNLGHKKE--LLRHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S   +   IIF   K++   L   L ++G     +HG+++Q +R K +   ++G I+L
Sbjct: 239 V-SDKGLTRAIIFSATKRDADELARELSREGHPAAPLHGDMNQFARNKTIERMRKGAIRL 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  + HV NFD+P  AE+Y+HRIGRTGRAG  G A + V+  ++ +++
Sbjct: 298 LVATDVAARGLDVNGISHVINFDLPRFAEDYVHRIGRTGRAGASGIAISFVSPSELSYLE 357

Query: 359 AIEKLIEKKVDWLN 372
            IE+ I KK+   N
Sbjct: 358 RIERFIGKKLPEQN 371


>gi|254461770|ref|ZP_05075186.1| ATP-dependent RNA helicase DeaD [Rhodobacterales bacterium
           HTCC2083]
 gi|206678359|gb|EDZ42846.1| ATP-dependent RNA helicase DeaD [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 450

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 156/374 (41%), Positives = 239/374 (63%), Gaps = 5/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  +GLS ++V  + + G   PTPIQ + IP  L  HDV G+AQTGTGKTA+F LP++T
Sbjct: 6   EFETMGLSERLVARLKELGLTTPTPIQARAIPEALNGHDVLGLAQTGTGKTAAFGLPLIT 65

Query: 62  ILEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +L +  GR   +  R LIL PTRELA Q+ +N + Y K   + VAL++GG     Q+K+L
Sbjct: 66  LLSENPGRPSPKTVRALILAPTRELAGQIVENLKDYTKGTPIKVALVVGGQSINVQSKRL 125

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G D+L+ TPGR++D  +R  L +     LV+DEAD+MLDMGFI  ++ I +++P  RQ
Sbjct: 126 EKGIDILVATPGRLIDLMDRRALTLKESHFLVLDEADQMLDMGFIHALRQIAAVLPEQRQ 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + +++  +L++PKRI+V+ P   A+ +    V  +   ++K +LL +LL
Sbjct: 186 TMLFSATMPKLMNEIANTYLKSPKRIQVSPPGKAADKVTQ--VVHFIAKTEKQSLLIELL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  ++F   K     L   L  +GF+  +IHGN  Q  R + L+ FK G ++++
Sbjct: 244 GAHKD-ERALVFGRTKHGCEKLMKQLVARGFAATSIHGNKSQGQRERALAAFKAGEMKVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIPDV HV+N+++PN  + Y+HRIGRT RAG+ G A    A +++  +  
Sbjct: 303 VATDVAARGLDIPDVRHVYNYELPNVPDAYVHRIGRTARAGKDGAAIAFCAPDEMDLLKD 362

Query: 360 IEKLIEKKVDWLNG 373
           IEK ++  +   +G
Sbjct: 363 IEKTMKISIPVASG 376


>gi|197119659|ref|YP_002140086.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
 gi|197089019|gb|ACH40290.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
          Length = 471

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 165/407 (40%), Positives = 242/407 (59%), Gaps = 25/407 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF    L PKV   +   GYV PTPIQ++ IP V+   DV G+AQTGTGKTA+F LPML
Sbjct: 1   MDFKQFNLHPKVQAGIEAMGYVTPTPIQLQAIPSVISGQDVLGLAQTGTGKTAAFGLPML 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++++ R  VR    L+L PTRELA Q+ D     GK   L    + GG+    Q KKL
Sbjct: 61  HRLVQEERGHVR---GLVLAPTRELAEQINDALNGMGKQTRLRSVTVYGGVNINTQIKKL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++  PGR+LDH ++G + ++ +EILV+DEAD+M DMGF+P ++ I   +P  RQ
Sbjct: 118 KEGAEIVVACPGRLLDHISQGTIDLSRVEILVLDEADQMFDMGFLPDVRKILRALPGKRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM D++++++   L+NP  ++V+  ++ A T+ H           K  LL ++L
Sbjct: 178 NLMFSATMPDDIRRLAHEILRNPVTVQVSR-TAPAATVSHALYPVGQHL--KTPLLFEML 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  DT ++ +IF   K     +   LEK G+   ++ GN+ Q  R   L  F++GT Q+M
Sbjct: 235 KHTDT-ESVLIFTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIM 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HV N+D+P+  E Y HRIGRTGRA + G AFT+V  ED   + +
Sbjct: 294 VATDIAARGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTSEDDYTVRS 353

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
           IEK++  K++            +E  D A         P PQK T F
Sbjct: 354 IEKVLGTKIERRR---------IEGFDYAV--------PAPQKDTEF 383


>gi|92112945|ref|YP_572873.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
           DSM 3043]
 gi|91796035|gb|ABE58174.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
           DSM 3043]
          Length = 452

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 166/370 (44%), Positives = 228/370 (61%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ K IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTSLGLSAPILDAVAEQGYETPSPIQAKAIPAVLEGRDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G RA  +  R LIL PTRELAAQ+  N E YGK+  L  A++ GG+    Q  KL
Sbjct: 61  ERLAAGTRAPGKQVRALILTPTRELAAQIGANIEAYGKHLPLRSAVVFGGVKINPQIAKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD   +  +  + +++LV+DEADRMLDMGFI  I+ I   +P  RQ
Sbjct: 121 RGGVDILVATPGRLLDLHGQKAVNFDALDVLVLDEADRMLDMGFIHDIRRILKTLPSKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + +P  I V   ++TAET+           ++K ALL  L+
Sbjct: 181 NLLFSATFSQEIRQLAKGLVNDPVEISVTPRNTTAETVTQWI--HPVDKARKPALLTHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   LE+ G    AIHGN  Q +R K L  FK G I+++
Sbjct: 239 H-EHQWQQVLVFMRTKHGANRLSRHLEEAGIEAAAIHGNKSQNARTKALDGFKSGEIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NF++PN AE+Y+HRIGRTGRAG  G A +LV  E+ K +  
Sbjct: 298 VATDIAARGLDINQLPQVVNFELPNVAEDYVHRIGRTGRAGASGHAISLVCAEEGKELAG 357

Query: 360 IEKLIEKKVD 369
           IE+LI + ++
Sbjct: 358 IERLIRQTLE 367


>gi|329847732|ref|ZP_08262760.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
           biprosthecum C19]
 gi|328842795|gb|EGF92364.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
           biprosthecum C19]
          Length = 606

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 152/368 (41%), Positives = 237/368 (64%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGLSP ++  +   GY KPTP+Q + IP +L+ HD+ GIAQTGTGKTA+F LP+L  
Sbjct: 4   FSDLGLSPTLLMTLEREGYEKPTPVQAQAIPYLLKGHDLLGIAQTGTGKTAAFALPILQH 63

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L   R     +M R LIL PTRELA+Q+A++F+ Y K   L +A + GG+ +  Q K L 
Sbjct: 64  LLSNRKMPSPKMVRALILSPTRELASQIAESFKTYSKGMGLQIATIYGGVKYGPQYKALL 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVL+CTPGR++DH  +  + ++ +E  V+DEAD+MLD+GF+  I+ + S +P  RQ 
Sbjct: 124 GGLDVLVCTPGRLIDHIEQKTVDLSQVECFVLDEADQMLDLGFVKPIRQVASRLPKKRQN 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+  ++   L +PKR+E+   ++TAE +    +   AQ  +K ALL ++  
Sbjct: 184 LFFSATMPKEIGVLASELLTDPKRVEITPEATTAERVSQQVLFIEAQ--RKRALLSEMY- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   ++  ++F   K++   +   L+  G    AIHG+ +Q  R + L  F+ G ++ +V
Sbjct: 241 ADAVLERTLVFTRTKRSADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFRAGKVRALV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ +V HV N+++PN AE Y+HRIGRT RAG+ G + TL A ++ + +  I
Sbjct: 301 ATDIAARGIDVDNVSHVINYELPNVAEAYVHRIGRTARAGKSGVSITLCADDERRLLKDI 360

Query: 361 EKLIEKKV 368
           E++  +++
Sbjct: 361 ERVTRQRI 368


>gi|75674512|ref|YP_316933.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
 gi|74419382|gb|ABA03581.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
          Length = 476

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 173/438 (39%), Positives = 251/438 (57%), Gaps = 12/438 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL+  +  A+ +  Y+ PTPIQ +TIP+ L   D+ GIAQTGTGKTA+F LP+L 
Sbjct: 9   SFQDFGLADPISRALAEENYLTPTPIQAQTIPIALTGRDLVGIAQTGTGKTAAFALPILH 68

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L + R +   +  R L+L PTREL+ Q+ +NF  YG++  LT AL IGG+P   Q + +
Sbjct: 69  RLLQNRIKPQPKSCRVLVLSPTRELSGQILENFNAYGRHLRLTSALAIGGVPMGRQVRAV 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G +V++ TPGR+LD      L +  +E LV+DEADRMLDMGFI  I+ + + +P  RQ
Sbjct: 129 MHGVEVMVATPGRLLDLVQSNGLKLGQVEFLVLDEADRMLDMGFIHDIRKVVAKLPAKRQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM  ++ +++   L++P R+ V   SST + I    +     ++ K A L QLL
Sbjct: 189 TLFFSATMPKDIAELANQMLRDPARVAVTPVSSTVDRITQRII--QVDHAGKAAFLAQLL 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+ +   +IF   K     +  SL K G    AIHGN  Q  R ++L+ F+ G I+ +
Sbjct: 247 K-QEPVNRALIFTRTKHGADKVVKSLAKSGIRSNAIHGNKSQNHRERVLAEFRAGEIRTL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           VA+D+AARG+D+  + HV NFD+PN  E Y+HRIGRT RAG  G A +LVA  E++ ++ 
Sbjct: 306 VATDIAARGIDVDGISHVVNFDLPNVPETYVHRIGRTARAGTDGAAISLVAGAEEMAYLR 365

Query: 359 AIEKLIE----KKVDWLNGDLSSLNPPLEKI--DIAQHNHARKNNPIPQKSTGFDRRKKN 412
            IEKLI     ++    +G   +   P +      A H HA +            RR K 
Sbjct: 366 DIEKLIRVVLPREDRRTSGQREAAPAPQQNRGGSPAPHGHAARAGDASSGKGSRRRRSKK 425

Query: 413 YSSQKSHIPLKESEKISK 430
            + Q S  P    ++ S+
Sbjct: 426 GTPQTSRRPESGRQETSR 443


>gi|254524903|ref|ZP_05136958.1| probable ATP-dependent rna helicase protein [Stenotrophomonas sp.
           SKA14]
 gi|219722494|gb|EED41019.1| probable ATP-dependent rna helicase protein [Stenotrophomonas sp.
           SKA14]
          Length = 473

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 167/374 (44%), Positives = 239/374 (63%), Gaps = 8/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PTPIQ + IPL L   D+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T  ++ R+  R PR LIL PTRELA QV D+   Y K   +  A + GG+    Q 
Sbjct: 61  QHLGTASQEVRSGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L RG D+L+  PGR++DH  R  + ++ IE+LV+DEADRMLDMGF+P I+ I + +P 
Sbjct: 121 DILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPK 180

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT  D +++++  F++NP++I+V   ++ AETI H      A   +K  LL
Sbjct: 181 QNRQTLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDA--GRKRDLL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL +QD+ +  ++F   K     L   LEK G    AIHGN  Q  R++ L +FK G 
Sbjct: 239 LHLL-AQDSREQTLVFARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGR 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARG+DI ++  V NFD+P  AE+Y+HRIGRTGR G  G+A +LVA++++K
Sbjct: 298 VTVLVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVK 357

Query: 356 HIDAIEKLIEKKVD 369
            + AI +L+ + +D
Sbjct: 358 LLRAITRLLGRDMD 371


>gi|91977976|ref|YP_570635.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
 gi|91684432|gb|ABE40734.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
          Length = 482

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 161/365 (44%), Positives = 230/365 (63%), Gaps = 6/365 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D GL+  +  A+ +  Y  PTPIQ +TIPL L   DV GIAQTGTGKTASF LP+L  
Sbjct: 10  FQDFGLADPISRALQEENYTIPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILHR 69

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + ++ + + +  R L+L PTREL+ Q+ D+F  YG++  L+  L IGG+P   Q + L 
Sbjct: 70  ILADRIKPQPKNCRVLVLSPTRELSGQILDSFNAYGRHIRLSSTLAIGGVPMGRQVRSLM 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G +VL+ TPGR+LD      L +  +E LV+DEADRMLDMGFI  I+ I + +P  RQT
Sbjct: 130 QGVEVLVATPGRLLDLVQSNALRLGQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQT 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  ++  ++E  L++P R+ V   +ST E I    +  +  +S K A+L Q+LQ
Sbjct: 190 LFFSATMPKDIADLAEQMLRDPARVAVTPVASTVERINQRVI--HLDHSAKPAMLAQILQ 247

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD +   ++F   K     +   L++ G +  AIHGN  Q  R ++L+ F+ G ++ +V
Sbjct: 248 -QDGVNQALVFTRTKHGADKVVKGLQRAGITADAIHGNKSQNYRERVLAAFRTGELRTLV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDA 359
           A+D+AARG+D+  V HV NFD+PN  E Y+HRIGRT RAG  G A +L A  E++ ++  
Sbjct: 307 ATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGAEGTAISLCAGGEEVGYLRD 366

Query: 360 IEKLI 364
           IEKLI
Sbjct: 367 IEKLI 371


>gi|17232210|ref|NP_488758.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
 gi|17133855|dbj|BAB76417.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
          Length = 426

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 166/375 (44%), Positives = 237/375 (63%), Gaps = 8/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS +++ AV + GY KPTPIQ+++IP VL   D+   AQTGTGKTASF LP+L
Sbjct: 1   MSFSHLGLSNEIINAVTELGYTKPTPIQMQSIPAVLSGRDLLAGAQTGTGKTASFTLPLL 60

Query: 61  TILE----KGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +L     K  +    P R LIL PTRELAAQV  +   YGK   L   ++ GG+    Q
Sbjct: 61  HLLSQDSLKSASNASSPIRALILTPTRELAAQVESSVRDYGKYLKLNSMVMFGGVSINPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L+   D+L+ TPGR+LDH  +G + ++ IEILV+DEADRMLDMGFI  I+ I SL+P
Sbjct: 121 KQRLKGRVDILVATPGRLLDHVQQGTVNLSQIEILVLDEADRMLDMGFIRDIRRILSLLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLF AT +D++++++   L  P+ IEV   + TA+T+         +  +K  LL
Sbjct: 181 KQRQNLLFFATFSDKIKELAAGLLNRPQMIEVARRNVTADTVTQKVYKI--ERDRKRDLL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++ +D     ++F   K     L   L  +     AIHGN  Q +R   L+ FK G+
Sbjct: 239 AHLIR-KDNWYQVLVFTRTKYGADRLVKQLGHERIQALAIHGNKSQSARTHALAKFKNGS 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARGLDI ++ +V NFD+P   E+Y+HRIGRTGRAG  G+A +LV+ ++  
Sbjct: 298 LQVLVATDIAARGLDISELPYVVNFDLPYVPEDYVHRIGRTGRAGASGEAVSLVSADEYH 357

Query: 356 HIDAIEKLIEKKVDW 370
            +  IEKLIEK++ +
Sbjct: 358 LLADIEKLIEKRLPF 372


>gi|170693410|ref|ZP_02884569.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170141565|gb|EDT09734.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 510

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 168/373 (45%), Positives = 232/373 (62%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRARV-----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L    A       R  R LIL PTRELAAQV ++   YGK   L   ++ GG+    Q
Sbjct: 61  QRLNSMPANTSASGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G D+++ TPGR+LDH  +  + ++++EILV+DEADRMLDMGFI  I+ + + +P
Sbjct: 121 IGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT +DE++ +++N L +P  IEV   ++TAET+            KK  LL
Sbjct: 181 PKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPV--DRDKKRELL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + L+ FK+GT
Sbjct: 239 THLIKQHNWFQV-LVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGT 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++++
Sbjct: 298 LQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQ 357

Query: 356 HIDAIEKLIEKKV 368
            +  IEKLI++ V
Sbjct: 358 LLKDIEKLIKRPV 370


>gi|113969505|ref|YP_733298.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113884189|gb|ABI38241.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 409

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 173/404 (42%), Positives = 249/404 (61%), Gaps = 12/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L  ++V  + + GY +PTPIQI+ IP +L + DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFSALSLHSQLVNTLAELGYQQPTPIQIEAIPAILAKQDVMAGAQTGTGKTAAFALPVL 60

Query: 61  TILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L         P   R L+L PTRELA QV  +F KY K  ++ + +  GG+  EAQ  
Sbjct: 61  QQLLLDNQSQDAPKDIRALVLVPTRELAVQVQQSFGKYAKGTDIRIGIAYGGVSIEAQQA 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           + + G DVLI TPGR+LDH  +G L + ++ +LV DEADRMLDMGF+  I+ +   VP  
Sbjct: 121 EFKAGIDVLIATPGRLLDHLRQGALNLKHLSVLVFDEADRMLDMGFMDEIKAVLKQVPAQ 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT+ D +   S+N L+ PK IEV   ++TA  +E    A  +   +K   +  
Sbjct: 181 RQTLLFSATLDDSIFGFSKNLLREPKLIEVAKRNTTAAQVEQRVYAIDS--DRKTEFVSH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++S++  +  +IF   K+ V  L   L + G +  A HG++ Q +R K+L +FK+G +Q
Sbjct: 239 LVRSKN-WQQVLIFSRTKQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLVQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI D+ +V NF++P  AE+YIHRIGRTGRAG  G A TL ++ED   +
Sbjct: 298 VLVATDVAARGLDIADLQYVINFELPFIAEDYIHRIGRTGRAGSTGLAITLFSQEDALLL 357

Query: 358 DAIEKLIEKKV--DWLNG---DLSSLNP-PLEKIDIAQHNHARK 395
           + +E L++K++   W  G   D + + P P      AQ   A+K
Sbjct: 358 EEVEALLDKRLPQQWYPGFEPDFNKMEPEPRRNSKAAQKQRAKK 401


>gi|92116022|ref|YP_575751.1| DEAD/DEAH box helicase-like [Nitrobacter hamburgensis X14]
 gi|91798916|gb|ABE61291.1| DEAD/DEAH box helicase-like protein [Nitrobacter hamburgensis X14]
          Length = 477

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 161/366 (43%), Positives = 230/366 (62%), Gaps = 6/366 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL+  +  A+ +  Y+ PTPIQ +TIPL L   D+ GIAQTGTGKTASF LP+L 
Sbjct: 9   SFQDFGLADPITRALAEENYLTPTPIQTQTIPLALAGRDIVGIAQTGTGKTASFALPILH 68

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L + R +   +  R L+L PTREL+ Q+ ++F  YG++  LT AL IGG+P   Q + +
Sbjct: 69  RLLQNRIKPQPKSCRVLVLSPTRELSGQILESFNAYGRHLRLTSALAIGGVPMGRQVRAV 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G +V++ TPGR+LD      L +  +E LV+DEADRMLDMGFI  I+ + + +P  RQ
Sbjct: 129 MQGVEVMVATPGRLLDLVQSNGLKLGQVEFLVLDEADRMLDMGFIHDIRKVVAKLPVKRQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM  ++ +++E  L++P R+ V   +ST + I    +     ++ K A L QLL
Sbjct: 189 TLFFSATMPKDIAELAEQMLRDPARVAVTPVASTVDRIAQRII--QVDHASKPAFLAQLL 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+ +   +IF   K     +  SL K G    AIHGN  Q  R ++L+ F+ G I+ +
Sbjct: 247 K-QEPVNRALIFTRTKHGADKVVKSLAKSGIRSDAIHGNKSQNHRERVLAAFRTGEIRTL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           VA+D+AARG+D+  + HV NFD+PN  E Y+HRIGRT RAG  G A +LVA  E++ ++ 
Sbjct: 306 VATDIAARGIDVDGISHVVNFDLPNVPETYVHRIGRTARAGADGAAISLVAGAEEMAYLR 365

Query: 359 AIEKLI 364
            IEKLI
Sbjct: 366 DIEKLI 371


>gi|254417807|ref|ZP_05031531.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
 gi|196183984|gb|EDX78960.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
          Length = 510

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 156/372 (41%), Positives = 235/372 (63%), Gaps = 5/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   GY KPTPIQ K IP V+Q  D+ GIAQTGTGKTA+F LP+L  
Sbjct: 18  FESMGLNKALLQALASEGYTKPTPIQEKAIPDVMQGKDLLGIAQTGTGKTAAFALPILHR 77

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L + R   + R  R L+L PTRELA Q+ D+F+ YG +    VA++ GG+ + AQ + L+
Sbjct: 78  LAENRIAPKPRTTRVLVLSPTRELATQIGDSFKAYGAHLGFRVAVIFGGVKYGAQERALQ 137

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+  PGR+LDH  +  L +++ EILV+DEAD+MLD+GFI  I+ I S +P  RQ 
Sbjct: 138 QGLDILVAAPGRLLDHIQQKNLDLSSTEILVLDEADQMLDLGFIKPIRQIVSRIPAKRQN 197

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+ K++   L++P +++V   S+T + I    V  + +  +K ALL ++  
Sbjct: 198 LFFSATMPTEIGKLAGELLKDPVKVQVTPQSTTVQRISQSVV--HVEQGRKRALLTEMFS 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  ++F   K     +   LE  G    AIHGN  Q  R + L  FK+G ++++V
Sbjct: 256 DPEYTRC-LVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLDAFKKGKLRVLV 314

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV NF++P+  E Y+HRIGRT RAG  G A + VA +++K +  I
Sbjct: 315 ATDIAARGIDVDGVSHVVNFELPHVPEAYVHRIGRTARAGADGTAISFVAGDEMKLLKDI 374

Query: 361 EKLIEKKVDWLN 372
           EK+  +K+  ++
Sbjct: 375 EKVTRQKIPAID 386


>gi|261253372|ref|ZP_05945945.1| ATP-dependent RNA helicase RhlE [Vibrio orientalis CIP 102891]
 gi|260936763|gb|EEX92752.1| ATP-dependent RNA helicase RhlE [Vibrio orientalis CIP 102891]
          Length = 488

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 160/367 (43%), Positives = 237/367 (64%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEQGYDTPSPIQEQAIPAVLSGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L+ G R +    R LIL PTRELAAQV +N  KY ++ +LT  ++ GG+    Q  KL
Sbjct: 61  ERLDNGQRVKGNHIRALILTPTRELAAQVQENVFKYSRHQSLTSQVVFGGVKVNPQMLKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DVL+ TPGR+LD + +  +  + +E+LV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 RKGCDVLVATPGRLLDLYQQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILNVLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + +P  + VN  +STA TIE       A   KK  +L +L+
Sbjct: 181 NLLFSATFSAEIRELAKGLVNDPVEVSVNKENSTAVTIEQSIYP--ADKRKKAPMLVKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +  K  ++FC  K     L   L K+G +   IHGN  Q +R + L++FK G ++++
Sbjct: 239 KDGN-WKQTLVFCRTKHGANRLAFFLNKEGITAAPIHGNKSQGARTRALADFKSGDVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V N+++P+ +E+Y+HRIGRTGRAG  G+A +LV  ++   +  
Sbjct: 298 VATDIAARGIDIPQLPQVVNYELPHVSEDYVHRIGRTGRAGEVGRAISLVEADEAGELFG 357

Query: 360 IEKLIEK 366
           IE+LI++
Sbjct: 358 IERLIQQ 364


>gi|291614123|ref|YP_003524280.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291584235|gb|ADE11893.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 511

 Score =  313 bits (801), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 160/361 (44%), Positives = 231/361 (63%), Gaps = 3/361 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL+P ++ AV DAGY  P+PIQ + IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 20  FATLGLNPAILKAVQDAGYTVPSPIQAQAIPEALAGHDLMASAQTGTGKTAAFILPALQR 79

Query: 63  LE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  +   R + PR L+L PTRELA QV+D   KYGKN  + V  ++GG+P+  QNK L  
Sbjct: 80  LSVESAVRSKGPRVLVLTPTRELAQQVSDAANKYGKNMRVKVVSILGGMPYPLQNKLLSG 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+L+ TPGR++DH  RG++  + +E+LV+DEADRMLDMGFI  ++ I +  P TRQTL
Sbjct: 140 FVDILVATPGRLIDHIERGRIDFSRLEMLVLDEADRMLDMGFIDDVERIAAATPATRQTL 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +  +++  L++PKRI V +  +  E IE   +      + K  LL  LL+ 
Sbjct: 200 LFSATLEGVIGNLAQRLLKSPKRISVTSAQAKHENIEQRLM-YVDDMAHKNRLLDHLLRD 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D +   ++F   K++  +L   L   G +  A+HG+++QR R + L N + G ++++VA
Sbjct: 259 VD-LNQALVFTATKRDADSLADELSAAGHAAAALHGDMNQRERNRTLLNLRRGNVRVLVA 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+  + HV NFD+P  AE+Y+HRIGRTGR G  G A +  +  D  H+  IE
Sbjct: 318 TDVAARGIDVAGITHVINFDLPKFAEDYVHRIGRTGRGGASGIAVSFASNRDAMHLKKIE 377

Query: 362 K 362
           +
Sbjct: 378 R 378


>gi|313205949|ref|YP_004045126.1| dead/deah box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|312445265|gb|ADQ81620.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|315022262|gb|EFT35290.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer
           RA-YM]
 gi|325336611|gb|ADZ12885.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
           RA-GD]
          Length = 371

 Score =  312 bits (800), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 161/364 (44%), Positives = 228/364 (62%), Gaps = 3/364 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  L LS  ++ A+ DAGY  PT IQ K IP +L+  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MNFTQLSLSSPILKAISDAGYTTPTAIQEKAIPTILEGRDLIGCAQTGTGKTAAFSIPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL +   + +  R LIL PTRELA Q+ +N E+Y K  N+    + GG+P   Q + L 
Sbjct: 61  QILSETPKKGKSVRALILTPTRELAIQIQENIEQYSKFLNIKHLSIFGGVPQGKQERALN 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+LI TPGR+LD   +G L ++ IEILV+DEADRMLDMGF+  ++ I + VP  RQT
Sbjct: 121 QGVDILIATPGRLLDLMQQGLLSLSQIEILVLDEADRMLDMGFVNDVKKILTKVPKKRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM + +++ +E  L NP  + V   SSTA+TIE      + + + K  LL  +L+
Sbjct: 181 LFFSATMPNSIRQFAETILDNPAEVTVTPVSSTAKTIEQSVY--FVEKNDKTNLLINILK 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +++ +IF   K     L   L + G    AIHGN  Q +R K L +FK+  I +++
Sbjct: 239 DTSELRS-LIFTRTKHGADRLVKQLGRTGIFAAAIHGNKSQNARQKALKDFKDNRISVLI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++  V N+++PN  E Y+HRIGRTGRAG  G A +    E+ K +  I
Sbjct: 298 ATDIAARGIDIDELPQVINYELPNVPETYVHRIGRTGRAGTSGNAISFCGTEERKDLKNI 357

Query: 361 EKLI 364
           +KLI
Sbjct: 358 QKLI 361


>gi|33598065|ref|NP_885708.1| putative ATP-dependent RNA helicase [Bordetella parapertussis
           12822]
 gi|33566623|emb|CAE38832.1| putative ATP-dependent RNA helicase [Bordetella parapertussis]
          Length = 477

 Score =  312 bits (800), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 170/424 (40%), Positives = 255/424 (60%), Gaps = 18/424 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FAD GL P ++ ++ D GY  PTPIQ + IP+V++  DV G AQTGTGKTA+F LP+L  
Sbjct: 19  FADFGLHPLLLKSIADTGYTNPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHR 78

Query: 61  --TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              +     +  R P R LIL PTRELA QV ++ ++Y  +  L  A++ GG+    Q +
Sbjct: 79  LMPLANTSASPARHPVRALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKE 138

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG +VL+ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF+P ++ I  L+P  
Sbjct: 139 ALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQ 198

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT ++E++K+  ++L +P  IEV   ++TA+T+    +A       K A +  
Sbjct: 199 RQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATADTVTQ--IAYQMHGDTKRAAVVH 256

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++S+  +K  I+F N K     L   LE+ G    +IHG+  Q  RMK L  FK G ++
Sbjct: 257 LVKSRG-LKQVIVFSNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKAGDLE 315

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  V  V N+D+P  AE+Y+HRIGRTGRAG  G+A  L   ++ +++
Sbjct: 316 VLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEERYL 375

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IEKLI+++V     +L +        D+   +H R  +    +  G DR +    +  
Sbjct: 376 LDIEKLIKRQVPRGKLELPA--------DLVARSHGRDRD--APRERGADRHRGERRTSG 425

Query: 418 SHIP 421
           +  P
Sbjct: 426 AAAP 429


>gi|323527279|ref|YP_004229432.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323384281|gb|ADX56372.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
          Length = 530

 Score =  312 bits (800), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 167/373 (44%), Positives = 233/373 (62%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L         +  R  R LIL PTRELAAQV ++   YGK   L   ++ GG+    Q
Sbjct: 61  QRLHSMPPLAAASGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G D+++ TPGR+LDH  +  + ++++EILV+DEADRMLDMGFI  I+ + + +P
Sbjct: 121 IGALKSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT +DE++ +++N L +P  IEV   ++TAET+            KK  LL
Sbjct: 181 PKRQNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAETVAQKIHPV--DRDKKRELL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + L+ FK+GT
Sbjct: 239 THLIKQHNWFQV-LVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGT 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++++
Sbjct: 298 LQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQ 357

Query: 356 HIDAIEKLIEKKV 368
            +  IEKLI++ V
Sbjct: 358 LLKDIEKLIKRPV 370


>gi|207727993|ref|YP_002256387.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
 gi|206591237|emb|CAQ56849.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
          Length = 559

 Score =  312 bits (800), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 165/376 (43%), Positives = 239/376 (63%), Gaps = 11/376 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY +PTPIQ + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 17  MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 76

Query: 61  TILEKGRA-RVRMP-------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
             L   +  +V  P       R L+L PTRELAAQV ++   YGK   L   ++ GG+  
Sbjct: 77  HRLSAAQPNKVHTPHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 136

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q   L+RG D+++ TPGR+LDH  +  + +++IE+LV+DEADRMLDMGFI  I+ I +
Sbjct: 137 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 196

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           ++P  RQ LLFSAT +D+++ +++  L  P  IEV   ++TAET+E           +K 
Sbjct: 197 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPV--DRERKR 254

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL +L++  D     ++F   K     L   L + G S  AIHGN  Q +R + LS FK
Sbjct: 255 ELLAKLVRDND-WHQVLVFTRTKHGANRLAEQLTRDGISALAIHGNKSQSARTRALSEFK 313

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT++++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  +
Sbjct: 314 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 373

Query: 353 DIKHIDAIEKLIEKKV 368
           +   +  IE+LI++++
Sbjct: 374 EHGLLRDIERLIKREL 389


>gi|83746502|ref|ZP_00943553.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
 gi|83726833|gb|EAP73960.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
          Length = 566

 Score =  312 bits (800), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 166/373 (44%), Positives = 237/373 (63%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL P ++ A+ ++GY +PTPIQ   IP+V+   DV G AQTGTGKTA F LP++  
Sbjct: 88  FDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQN 147

Query: 63  L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L        +  R P R LIL PTRELA QV DN  KY K   L  A++ GG+    Q +
Sbjct: 148 LLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTE 207

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++L+ TPGR+LDH  +  + ++ + +LV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 208 QLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAH 267

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++ ++L++P+ IEV   ++TA+ +    + T     K+ AL+  
Sbjct: 268 RQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQ-VIYTVPDGHKQAALVHL 326

Query: 238 LLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L Q   Q      I+F N K     L  +LE++  +  AIHG+  Q  RM+ L  FK+GT
Sbjct: 327 LRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQGT 386

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGLDI  +  V NFD+P  AE+Y+HRIGRTGRAG  G A +L A  D +
Sbjct: 387 VDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDER 446

Query: 356 HIDAIEKLIEKKV 368
            +  IEKLI++ +
Sbjct: 447 LLADIEKLIKRNL 459


>gi|167835531|ref|ZP_02462414.1| putative ATP-dependent RNA helicase rhlE [Burkholderia
           thailandensis MSMB43]
          Length = 402

 Score =  312 bits (800), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 165/372 (44%), Positives = 237/372 (63%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R+  R  R LIL PTRELAAQV ++   Y K   L  A++ GG+    Q 
Sbjct: 61  QRLHTFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSAVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            +K  LL 
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLAKDGISAMAIHGNKSQSARTRALSEFKNSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|332286324|ref|YP_004418235.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
 gi|330430277|gb|AEC21611.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
          Length = 477

 Score =  312 bits (800), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 163/370 (44%), Positives = 234/370 (63%), Gaps = 6/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL+  ++ AV D GY  PTPIQ + IP V+Q  D+   AQTGTGKTA F LP+L  
Sbjct: 7   FASLGLAEPLLRAVTDTGYEHPTPIQAQAIPQVMQGGDLLAAAQTGTGKTAGFTLPILHR 66

Query: 63  LEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L +  A+ R    PR LIL PTREL AQV ++   Y K+ ++   ++ GG+    Q   L
Sbjct: 67  LLQNPAQGRKPGQPRVLILTPTRELTAQVEESVRTYSKHTSIRSMVMFGGVNINPQISAL 126

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+L+ TPGR+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 127 RKPLDILVATPGRLLDHAQQKTVDLSAVEILVLDEADRMLDMGFIRDIRRILALLPKQRQ 186

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ +S+  L +P  I V   ++ +E +E   V T  + + K  LL  ++
Sbjct: 187 NLLFSATFSDEIRALSKGVLNDPIEISVARRNTASELVEQSVVLT--EQAHKRDLLSHII 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK+G + ++
Sbjct: 245 R-ESGWHQVLVFTRTKHGANRLAEKLVKDGLSAAAIHGNKSQAARTRALAGFKDGKVAVL 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV NF++PN  E+Y+HRIGRTGRAG  G A +LV + +IK + A
Sbjct: 304 VATDIAARGIDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGSTGSAMSLVDRTEIKLLSA 363

Query: 360 IEKLIEKKVD 369
           IEKLI++ ++
Sbjct: 364 IEKLIKRPIE 373


>gi|296103277|ref|YP_003613423.1| putative ATP-dependent RNA helicase RhlE [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295057736|gb|ADF62474.1| putative ATP-dependent RNA helicase RhlE [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 450

 Score =  312 bits (800), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 162/372 (43%), Positives = 241/372 (64%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P+++ A+ + GYV+PTPIQ + IP VLQ  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPEILRAIAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGR--ARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L K +  A+ R P R LIL PTRELAAQ+ +N   Y +  N+   ++ GG+    Q  
Sbjct: 61  ELLVKNQPHAKGRRPVRALILTPTRELAAQIGENVRDYSRYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++N+EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDNVEILVLDEADRMLDMGFIHDIRRVLAKLPPR 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  +EV   ++ +E + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEVEVARRNTASEQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IE+L++K++
Sbjct: 357 LRDIERLLKKEI 368


>gi|332525968|ref|ZP_08402109.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332109519|gb|EGJ10442.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 500

 Score =  312 bits (800), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 165/374 (44%), Positives = 242/374 (64%), Gaps = 10/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+DLGL+  ++ AV + GY  PTPIQ + IP VLQ  D+   AQTGTGKTA F LPML
Sbjct: 1   MNFSDLGLAEPLLRAVREQGYDVPTPIQAQAIPAVLQGGDLLAGAQTGTGKTAGFTLPML 60

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L         R R+ + R L+L PTRELAAQV ++   YGK   LT  ++ GG+  + 
Sbjct: 61  QRLSASKPVRDSRGRIAV-RALVLTPTRELAAQVEESVRAYGKYLPLTSMVMFGGVGMQP 119

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  +L +G D+L+ TPGR+LDH  +G L ++ ++ILV+DEADRMLDMGFI  I+ + +++
Sbjct: 120 QIDRLRKGVDILVATPGRLLDHHGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLAVL 179

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  +Q+LLFSAT +DE++ +++  L  P  IEV   ++TA+TI         +  KK  L
Sbjct: 180 PQKKQSLLFSATFSDEIKALADRLLNQPALIEVARRNATADTIAQKVHPVGRE--KKKEL 237

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L++  D  +  ++F   K     L   L +QG +  AIHGN  Q +R K L+ FK G
Sbjct: 238 LAHLIRQGDWHQV-LVFTRMKHGANRLAEYLNEQGITAMAIHGNKSQGARTKALAEFKAG 296

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           T+Q++VA+D+AARG+DI  + HV N+++PN  E+Y+HRIGRTGRAG  G+A +LV  ++ 
Sbjct: 297 TLQVLVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGASGEAVSLVCLDEE 356

Query: 355 KHIDAIEKLIEKKV 368
             +  I++LI++++
Sbjct: 357 IFLRDIQRLIKREI 370


>gi|194364258|ref|YP_002026868.1| DEAD/DEAH box helicase domain-containing protein [Stenotrophomonas
           maltophilia R551-3]
 gi|194347062|gb|ACF50185.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 471

 Score =  312 bits (800), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 167/374 (44%), Positives = 238/374 (63%), Gaps = 8/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PTPIQ + IPLVL   D+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGRDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T  ++ R   R PR LIL PTRELA QV D+   Y K   +  A + GG+    Q 
Sbjct: 61  QHLGTASQEVRTGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L RG D+L+  PGR++DH  R  + ++ IE+LV+DEADRMLDMGF+P I+ I + +P 
Sbjct: 121 DILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPK 180

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT  D +++++  F++NP++I+V   ++ AETI H          +K  LL
Sbjct: 181 QNRQTLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDG--GRKRDLL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL +QD+ +  ++F   K     L   LEK G    AIHGN  Q  R++ L +FK G 
Sbjct: 239 LHLL-AQDSREQTLVFARTKHGSDKLAAFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGR 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARG+DI ++  V NFD+P  AE+Y+HRIGRTGR G  G+A +LVA++++K
Sbjct: 298 VTVLVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVK 357

Query: 356 HIDAIEKLIEKKVD 369
            + AI +L+ + +D
Sbjct: 358 LLRAITRLLGRDMD 371


>gi|77917983|ref|YP_355798.1| putative ATP-dependent RNA helicase [Pelobacter carbinolicus DSM
           2380]
 gi|77544066|gb|ABA87628.1| putative ATP-dependent RNA helicase [Pelobacter carbinolicus DSM
           2380]
          Length = 435

 Score =  312 bits (799), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 160/402 (39%), Positives = 246/402 (61%), Gaps = 9/402 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF++L L P+++ A+ D GY  PTPIQ + +P  L   D+   A TGTGKTA+F+LP L
Sbjct: 1   MDFSELKLDPRILKALTDCGYHVPTPIQAQAVPEALAGRDLIASAGTGTGKTAAFMLPAL 60

Query: 61  TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L    AR +  PR L+L PTRELA QV D    YGK   LT A+L+GG+P+  Q + L
Sbjct: 61  QRLTVKIARRKGAPRMLVLAPTRELAGQVMDAARVYGKYLGLTTAVLLGGVPYRDQFRAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR+LDH  R  + ++ +E+LV+DEADRMLDMGF   +  + +  P  RQ
Sbjct: 121 AKPLDLVVATPGRLLDHLQRRSIDLSCLEMLVLDEADRMLDMGFKEDVDKVCAAAPRQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALLQQL 238
           T++F+AT+ D +QK++   L +P RI++    + ++ IE H  VA   Q+  +  LLQ L
Sbjct: 181 TMMFTATLNDAMQKMARRLLDDPFRIDIAVVKNVSDHIEQHLHVADNRQHKNR--LLQHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+  D +   I+F   K++  +L   L  QG+   A+HG+++Q +R + + + + G I++
Sbjct: 239 LKHSD-ISQAIVFSATKRDADSLARDLSAQGYRAAALHGDMNQGARNRTVRDLRRGRIRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  + HVFN+D+P  AE+Y+HRIGRTGRAG  G A + V+  ++  + 
Sbjct: 298 LVATDVAARGLDVAGISHVFNYDLPKFAEDYVHRIGRTGRAGATGVAISFVSGAEVSALR 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNP--PLEKIDIAQHNHARKNNP 398
            I+  I +++     ++  L P  PL           + N P
Sbjct: 358 RIQHFIGRELP--RREIPGLEPRFPLRAASAEGRRRYKGNGP 397


>gi|89092720|ref|ZP_01165673.1| putative ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
 gi|89083232|gb|EAR62451.1| putative ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
          Length = 427

 Score =  312 bits (799), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 164/367 (44%), Positives = 236/367 (64%), Gaps = 4/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L L P++   + + GY +PTPIQ + IPLVL+  D+   AQTGTGKTASF LP++  
Sbjct: 6   FAELALCPELQFTLKNLGYEQPTPIQSQAIPLVLRGDDLLAEAQTGTGKTASFALPIIEK 65

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L K       P R L+L PTRELA QVADN  +YG++  + V  + GG+P E Q K+L+R
Sbjct: 66  LSKNPIDGYRPVRALVLAPTRELAIQVADNTLEYGRDLGMRVISVYGGVPVENQIKRLKR 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+L+ TPGR+LD   +  + +  +E LV+DEADRMLD+GFI  IQ I       RQTL
Sbjct: 126 GTDILVATPGRLLDLLRQKAISLEKLEYLVLDEADRMLDLGFIDPIQKIMDYAADDRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LF+AT  + ++ ++E +L NP +I+V   +STA+ I     A    Y +K  +L  L+ +
Sbjct: 186 LFTATADESVEVLAEFYLNNPTKIKVTPRNSTAKQIRQ--FAYQVDYGQKADILSYLI-T 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      ++F   KK V  L   L K+G +  AIHG   QR R+++L+ F  G + ++VA
Sbjct: 243 EGKWGQTLVFVRTKKRVDELTQYLCKEGINAAAIHGEKSQRERVRMLNEFIAGDLHVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  + +V N+D+PN+ E Y+HRIGRTGRAG  G+A +LVA  + + +  IE
Sbjct: 303 TDVAARGLDIESLPYVVNYDLPNQPEAYVHRIGRTGRAGETGEAVSLVAPAEREFLQRIE 362

Query: 362 KLIEKKV 368
           KLI++K+
Sbjct: 363 KLIKQKI 369


>gi|119384480|ref|YP_915536.1| DEAD/DEAH box helicase domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119374247|gb|ABL69840.1| DEAD/DEAH box helicase domain protein [Paracoccus denitrificans
           PD1222]
          Length = 479

 Score =  312 bits (799), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 162/374 (43%), Positives = 233/374 (62%), Gaps = 5/374 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  +G+  +V   +   G   P+PIQ K+IP ++   D+ G+AQTGTGKTA+F LPMLT 
Sbjct: 69  FTRMGIDARVAINLPGLGIETPSPIQEKSIPGIVAGRDLLGLAQTGTGKTAAFGLPMLTR 128

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L  GR    R  R LIL PTRELA Q+A+N + Y     +    ++GG     Q ++LE
Sbjct: 129 LLNIGRKPEPRTCRALILAPTRELATQIAENIDNYAIGTPIRQFRVVGGASINVQVQRLE 188

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR++D   RG + ++    LV+DEAD+MLD+GFI  ++ I  ++P  RQT
Sbjct: 189 RGVDVLIATPGRLIDLIERGAIDLSQTRYLVLDEADQMLDIGFIHALRRIAKMLPRERQT 248

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++++++L +P R+ VN P   AE I+      +     K  LL + L 
Sbjct: 249 LLFSATMPKLMEELADSYLNDPLRVAVNPPGQAAEKIDQGV--HFVNQGDKATLLAEYL- 305

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+   +  I+F   K     LC  L+K GF V AIHGN  Q  R + L++F+ G  +++V
Sbjct: 306 SKHVDELAIVFGRTKHGSEKLCKLLDKWGFKVAAIHGNKSQGQRERALASFRAGETKVLV 365

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V HV+N+D+PN  ENY+HRIGRT RAGR G+A    +  +I  + AI
Sbjct: 366 ATDVAARGLDIPQVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAIAFCSPTEIGELRAI 425

Query: 361 EKLIEKKVDWLNGD 374
           EK ++ K+  + G+
Sbjct: 426 EKAMKAKIAVVGGE 439


>gi|237806840|ref|YP_002891280.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237499101|gb|ACQ91694.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 489

 Score =  312 bits (799), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 163/367 (44%), Positives = 235/367 (64%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS  ++ AV D GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTELGLSEPLLRAVKDKGYDTPSPIQLQAIPAVLAGQDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G  AR    R L+L PTRELAAQVA++   YGK   L   ++ GG+    Q   +
Sbjct: 61  HRLSRGNPARSNAVRALVLTPTRELAAQVAESVTTYGKYLPLKSVVVFGGVNINPQMLAM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR+LD  ++  L    +E+L++DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 RKGADVLVATPGRLLDLVSQNALHFRQLEVLILDEADRMLDMGFIRDIRKIINMLPKDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT +DE++ +++  L  P +I+V   ++TAETI+           +K ALL  L+
Sbjct: 181 TLMFSATFSDEIRTLAKGLLNEPVQIDVAPRNTTAETIKQTICPV--DKGRKPALLCHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +  +  ++F   K     L   LE  G    AIHGN  Q +R + LS FK+G+++++
Sbjct: 239 K-HNNWQQVLVFMRTKHGANKLVTQLETAGIQAAAIHGNKSQGARTRALSGFKDGSVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+++PN AE+Y+HRIGRTGRAG  G A +LV+ ++   +  
Sbjct: 298 VATDIAARGIDIAQLPQVVNYELPNIAEDYVHRIGRTGRAGMEGHAISLVSADEQPLLVD 357

Query: 360 IEKLIEK 366
           +EKLI++
Sbjct: 358 VEKLIKQ 364


>gi|224369411|ref|YP_002603575.1| RhlE2 [Desulfobacterium autotrophicum HRM2]
 gi|223692128|gb|ACN15411.1| RhlE2 [Desulfobacterium autotrophicum HRM2]
          Length = 460

 Score =  312 bits (799), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 161/370 (43%), Positives = 235/370 (63%), Gaps = 6/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL  +++ AV   GY++PTPIQI+ IP +L   D+   AQTGTGKT +F LP++
Sbjct: 1   MSFEELGLRAELIKAVKTKGYIEPTPIQIRVIPAILNGQDILARAQTGTGKTDAFALPIV 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL +G+A  R PR L+L PTRELA QV ++ + Y +  +L   ++ GG+    Q  +L+
Sbjct: 61  EILARGKAHRRHPRALVLTPTRELALQVGESIKAYARRVSLRCTVVYGGVNVNPQIDRLK 120

Query: 121 RGADVLICTPGRILD--HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           RG D+L+ TPGR+LD   FNR  + ++ IE LV DEADRMLD+GF   I  I  LVP  R
Sbjct: 121 RGVDILVATPGRLLDLAAFNR-DVKLSKIEFLVFDEADRMLDLGFSDEISQILELVPQDR 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +T+LFSAT T +++ +++  L+ P++IEV   ++ AE+I         + S K  LL  L
Sbjct: 180 RTMLFSATYTRQIRDLADKMLKTPEQIEVTPNTTVAESIVQKV--HLVEKSNKRELLIHL 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   D  +  ++F   K     L   L +   S  A+HGN  Q  R + L  FK G I++
Sbjct: 238 ITRSD-WRQVLVFTRTKHGANKLAERLAQVKISAAALHGNKSQSFRTRTLQEFKNGEIRI 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV N+D+P+ AE+Y+HRIGRTGRAG  G A +LV+KE+   + 
Sbjct: 297 LVATDVAARGLDITGLPHVVNYDMPSVAEDYVHRIGRTGRAGIQGVAVSLVSKEEKVFLK 356

Query: 359 AIEKLIEKKV 368
           ++E L+E+K+
Sbjct: 357 SVESLLEQKI 366


>gi|300705099|ref|YP_003746702.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum
           CFBP2957]
 gi|299072763|emb|CBJ44116.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum
           CFBP2957]
          Length = 547

 Score =  312 bits (799), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 165/376 (43%), Positives = 240/376 (63%), Gaps = 11/376 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY +PTPIQ + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMP-------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
             L   +  +V  P       R L+L PTRELAAQV ++   YGK   L   ++ GG+  
Sbjct: 61  HRLSAAQPNKVHTPHGMRYPVRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q   L+RG D+++ TPGR+LDH  +  + +++IE+LV+DEADRMLDMGFI  I+ I +
Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           ++P  RQ LLFSAT +D+++ +++  L  P  IEV   ++TAET+E           +K 
Sbjct: 181 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPV--DRERKR 238

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL +L++  D  +  ++F   K     L   L + G S  AIHGN  Q +R + LS FK
Sbjct: 239 ELLAKLVRDNDWHQV-LVFTRTKHGANRLAEQLTRDGISALAIHGNKSQSARTRALSEFK 297

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT++++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  +
Sbjct: 298 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 357

Query: 353 DIKHIDAIEKLIEKKV 368
           +   +  IE+LI++++
Sbjct: 358 EHGLLRDIERLIKREL 373


>gi|156976669|ref|YP_001447575.1| ATP-dependent RNA helicase [Vibrio harveyi ATCC BAA-1116]
 gi|156528263|gb|ABU73348.1| hypothetical protein VIBHAR_05443 [Vibrio harveyi ATCC BAA-1116]
          Length = 430

 Score =  312 bits (799), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 167/408 (40%), Positives = 250/408 (61%), Gaps = 15/408 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P+VV A+ + GY K TPIQ K IP+  + HD+   AQTGTGKTA+F LPM+
Sbjct: 1   MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMI 60

Query: 61  T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +LE GR+  R   R LI+ PTRELA Q+ADN + Y K  +L+VA + GG    +Q   
Sbjct: 61  QQLLESGRSASRKTARALIMAPTRELAEQIADNIKAYTKYTDLSVAAIFGGRKMSSQVTA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H  +G + + +IE LV DEADR+LDMGFI  ++ I   V    
Sbjct: 121 LEGGVDILVATPGRLEEHIEQGNVSVASIEFLVFDEADRILDMGFIHAVRKIMMDVDTDP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L  ++++ L+ PKRIEV   ++TA+TI H          +K  LL +L
Sbjct: 181 QIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAQTIAHVLYPV--DQERKTELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   K  ++F N K+   ++   L+  G      HG+  Q +R + L  FK G  ++
Sbjct: 239 I-GRKNWKQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V +E+   + 
Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVV 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPP-----LEKIDIA---QHNHARKNNP 398
            +E LI++++  +  +L+   P      +EK++     ++   R+NNP
Sbjct: 358 QVENLIQQRIRRI--ELAGYEPKQRESYIEKLNSKPAFKNRQGRRNNP 403


>gi|190572660|ref|YP_001970505.1| putative ATP-dependent RNA helicase 1 [Stenotrophomonas maltophilia
           K279a]
 gi|190010582|emb|CAQ44191.1| putative ATP-dependent RNA helicase 1 [Stenotrophomonas maltophilia
           K279a]
          Length = 470

 Score =  312 bits (799), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 167/374 (44%), Positives = 239/374 (63%), Gaps = 8/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PTPIQ + IPL L   D+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T  ++ R+  R PR LIL PTRELA QV D+   Y K   +  A + GG+    Q 
Sbjct: 61  QHLGTASQEVRSGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L RG D+L+  PGR++DH  R  + ++ IE+LV+DEADRMLDMGF+P I+ I + +P 
Sbjct: 121 DILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPK 180

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT  D +++++  F++NP++I+V   ++ AETI H      A   +K  LL
Sbjct: 181 QNRQTLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDA--GRKRDLL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL +QD+ +  ++F   K     L   LEK G    AIHGN  Q  R++ L +FK G 
Sbjct: 239 LHLL-AQDSREQTLVFARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGR 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARG+DI ++  V NFD+P  AE+Y+HRIGRTGR G  G+A +LVA++++K
Sbjct: 298 VTVLVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVK 357

Query: 356 HIDAIEKLIEKKVD 369
            + AI +L+ + +D
Sbjct: 358 LLRAIVRLLGRDMD 371


>gi|257792189|ref|YP_003182795.1| DEAD/DEAH box helicase domain-containing protein [Eggerthella lenta
           DSM 2243]
 gi|257476086|gb|ACV56406.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
          Length = 508

 Score =  312 bits (799), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 160/370 (43%), Positives = 228/370 (61%), Gaps = 3/370 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FADLGLS   + AV   GY  PTP+Q++ IPLVL+  D+   A TGTGKTA+F+LP+L+
Sbjct: 3   NFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPILS 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +G+   R PR L++ PTRELA Q++    +  +     V  + GG P+  Q  ++ R
Sbjct: 63  TLPRGKRGKRAPRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVFGGTPYGPQINEIRR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+ D  N+G + +  I+ LV+DEADRMLDMGF+P +  I    P  RQTL
Sbjct: 123 GTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPADRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +QK   + L +P  +E+     TA+T+E  F+   A + KK  LLQ LL+ 
Sbjct: 183 LFSATIDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQ-FMMPIANF-KKPELLQALLEE 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + + +  I+F   K    +   +L   G+   +IH +  Q  R + L NF+ G   ++VA
Sbjct: 241 KGSDRV-IVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+PDV HV NFD+P+  E+Y+HRIGRTGRAG  G A + V +E  + +  IE
Sbjct: 300 TDVLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFVTRESRRTMSDIE 359

Query: 362 KLIEKKVDWL 371
           KLI K V  +
Sbjct: 360 KLIGKNVPLM 369


>gi|152969387|ref|YP_001334496.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954236|gb|ABR76266.1| putative ATP-dependent RNA helicase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 451

 Score =  312 bits (799), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 165/372 (44%), Positives = 239/372 (64%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ AV + GYV+PTPIQ + IP VLQ  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQV +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QRLIQNEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDIRRVLAKLPAR 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +DE++ ++E  L NP  +EV   ++ +E I +H     +   ++K  LL 
Sbjct: 181 RQNLLFSATFSDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVH---FVDKNRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           QL+  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 QLI-GEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IE+L++K++
Sbjct: 357 LRDIERLLKKEI 368


>gi|269963602|ref|ZP_06177925.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831615|gb|EEZ85751.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 430

 Score =  312 bits (799), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 167/408 (40%), Positives = 249/408 (61%), Gaps = 15/408 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P+VV A+ + GY K TPIQ K IP+  + HD+   AQTGTGKTA+F LPM+
Sbjct: 1   MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARRGHDIFATAQTGTGKTAAFSLPMI 60

Query: 61  T-ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +L+ GR A  +  R LI+ PTRELA Q+ADN + Y K  NL+VA + GG    +Q   
Sbjct: 61  QRLLDSGRNASRKTARALIMAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMPSQISA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H  +G + + NIE LV DEADR+LDMGFI  ++ I   V    
Sbjct: 121 LENGVDILVATPGRLEEHIEQGNVSVANIEFLVFDEADRILDMGFINAVRKIMLDVDTDP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L  ++ + L+ PKRIEV   ++TA+T+ H          +K  LL +L
Sbjct: 181 QIMMFSATTSTQLNVLARDILRKPKRIEVERANTTAQTVAHVLYPV--DQERKTELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   K  ++F N K+   ++   L+  G      HG+  Q +R + L  FK G +++
Sbjct: 239 I-GRKNWKQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V +E+   + 
Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVV 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPP-----LEKIDIA---QHNHARKNNP 398
            +E LI++ +  +  +L+   P      +EK++     ++   R+NNP
Sbjct: 358 QVENLIQQHIRRI--ELAGYEPKQRESYIEKLNSKPAFKNRQGRRNNP 403


>gi|163786067|ref|ZP_02180515.1| putative ATP-dependent RNA helicase RhlE [Flavobacteriales
           bacterium ALC-1]
 gi|159877927|gb|EDP71983.1| putative ATP-dependent RNA helicase RhlE [Flavobacteriales
           bacterium ALC-1]
          Length = 436

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 161/370 (43%), Positives = 239/370 (64%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+   GY  P+PIQ K IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFKSLGLSEPLLRAISKKGYETPSPIQAKAIPPVLEEKDVLASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +   +   P R LIL PTRELAAQV  N ++Y +  N+   ++ GG+  + Q   +
Sbjct: 61  HLLSQRPVQKHRPIRALILTPTRELAAQVHTNVKEYSEFLNIKSTVIFGGVNQKPQVATI 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DVL+ TPGR++D  ++G L +  +EI V+DEADRMLDMGF+  I+ +  L+P  RQ
Sbjct: 121 RKGVDVLVATPGRLIDLESQGLLSLKRVEIFVLDEADRMLDMGFLRDIERVMKLMPDKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT + +++K++ + L NP ++E  TP +TA  +    V   A+  KK  L+ +L+
Sbjct: 181 NLMFSATFSKDIKKLAYSILNNPVKVEA-TPENTAVEVIDQKVYRVAK-GKKTGLIIKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+   K  ++F   K     LC  +   G +  AIHGN  Q +R K L+ FK G ++++
Sbjct: 239 -SEGNWKQVLVFTRTKHGANKLCKKMISAGITAAAIHGNKSQGARTKALAGFKSGKVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + HV N+++PN +E+Y+HRIGRTGRAG  G+A +LV+ ++  ++ +
Sbjct: 298 VATDIAARGLDIPLLPHVVNYEIPNISEDYVHRIGRTGRAGASGEAISLVSADETTYLRS 357

Query: 360 IEKLIEKKVD 369
           IEKLI+ K++
Sbjct: 358 IEKLIDMKIE 367


>gi|293602831|ref|ZP_06685270.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
           43553]
 gi|292818625|gb|EFF77667.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
           43553]
          Length = 414

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 164/370 (44%), Positives = 234/370 (63%), Gaps = 6/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  ++ A+ D GY  PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L +
Sbjct: 7   FADLGLADSLLRAIADTGYTAPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFTLPILHL 66

Query: 63  LEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L + +   R    PR LIL PTREL AQVA++ + YGK  +LT  ++ GG+    Q   L
Sbjct: 67  LMQQKPEARKPGRPRCLILTPTRELTAQVAESVQTYGKYTSLTSMVMFGGVNINPQISAL 126

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+L+ TPGR+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 127 RKPLDILVATPGRLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKILALLPKQRQ 186

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ ++   L NP  + V TP +TA  +    V    Q+ K+  L+  ++
Sbjct: 187 NLLFSATFSDEIRTLARGVLNNPGEVSV-TPRNTATELVTQTVHMVEQHHKR-DLISHII 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +      ++F   K     L   L K G +  AIHGN  Q +R + L+ FK+ T+ ++
Sbjct: 245 R-ESGWHQVLVFTRTKHGANRLAEKLVKDGLTAAAIHGNKSQSARTRALAGFKDSTVTVL 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV   +IK +  
Sbjct: 304 VATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDNSEIKLLKD 363

Query: 360 IEKLIEKKVD 369
           IE+LI+K ++
Sbjct: 364 IERLIKKTIE 373


>gi|317490115|ref|ZP_07948604.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
 gi|316910820|gb|EFV32440.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
          Length = 509

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 160/370 (43%), Positives = 228/370 (61%), Gaps = 3/370 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FADLGLS   + AV   GY  PTP+Q++ IPLVL+  D+   A TGTGKTA+F+LP+L+
Sbjct: 3   NFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPILS 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +G+   R PR L++ PTRELA Q++    +  +     V  + GG P+  Q  ++ R
Sbjct: 63  TLPRGKRGKRAPRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVFGGTPYGPQINEIRR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+ D  N+G + +  I+ LV+DEADRMLDMGF+P +  I    P  RQTL
Sbjct: 123 GTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPADRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +QK   + L +P  +E+     TA+T+E  F+   A + KK  LLQ LL+ 
Sbjct: 183 LFSATIDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQ-FMMPIANF-KKPELLQALLEE 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + + +  I+F   K    +   +L   G+   +IH +  Q  R + L NF+ G   ++VA
Sbjct: 241 KGSDRV-IVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+PDV HV NFD+P+  E+Y+HRIGRTGRAG  G A + V +E  + +  IE
Sbjct: 300 TDVLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFVTRESRRTMSDIE 359

Query: 362 KLIEKKVDWL 371
           KLI K V  +
Sbjct: 360 KLIGKNVPLM 369


>gi|207742395|ref|YP_002258787.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
 gi|206593785|emb|CAQ60712.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
          Length = 545

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 165/376 (43%), Positives = 240/376 (63%), Gaps = 11/376 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY +PTPIQ + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMP-------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
             L   +  +V  P       R L+L PTRELAAQV ++   YGK   L   ++ GG+  
Sbjct: 61  HRLSAAQPNKVHTPHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q   L+RG D+++ TPGR+LDH  +  + +++IE+LV+DEADRMLDMGFI  I+ I +
Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           ++P  RQ LLFSAT +D+++ +++  L  P  IEV   ++TAET+E           +K 
Sbjct: 181 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPV--DRERKR 238

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL +L++  D  +  ++F   K     L   L + G S  AIHGN  Q +R + LS FK
Sbjct: 239 ELLAKLVRDNDWHQV-LVFTRTKHGANRLAEQLTRDGISALAIHGNKSQSARTRALSEFK 297

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT++++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  +
Sbjct: 298 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 357

Query: 353 DIKHIDAIEKLIEKKV 368
           +   +  IE+LI++++
Sbjct: 358 EHGLLRDIERLIKREL 373


>gi|238753347|ref|ZP_04614710.1| ATP-dependent RNA helicase rhlE [Yersinia ruckeri ATCC 29473]
 gi|238708300|gb|EEQ00655.1| ATP-dependent RNA helicase rhlE [Yersinia ruckeri ATCC 29473]
          Length = 453

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 164/374 (43%), Positives = 240/374 (64%), Gaps = 12/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ A+ + GY+ PTPIQ + IP+VLQ  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAIEEQGYLVPTPIQRQAIPVVLQGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            IL       KGR   R  R LIL PTRELAAQ+ +N E+Y K   L   ++ GG+    
Sbjct: 61  QILNENAQPIKGR---RPVRALILTPTRELAAQIGENVEQYSKYLKLRSLVVFGGVSINP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I       +   ++K  L
Sbjct: 178 PAKRQNLLFSATFSDEIKGLASKLLNNPASVEVARRNTASEQITQSV--HFVDKNRKREL 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L Q++ SQ+  +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G
Sbjct: 236 LSQMIGSQN-WQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ 
Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCIDEH 354

Query: 355 KHIDAIEKLIEKKV 368
           K +  IE+L+++++
Sbjct: 355 KLLRDIERLLKREI 368


>gi|27366822|ref|NP_762349.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|320158706|ref|YP_004191084.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
 gi|27358389|gb|AAO07339.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|319934018|gb|ADV88881.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
          Length = 427

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 161/382 (42%), Positives = 238/382 (62%), Gaps = 7/382 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA  G +P+VV A+ + GY K TPIQ K IP+  + HD+   AQTGTGKTA+F LP++
Sbjct: 1   MSFASQGFAPEVVKALEECGYEKLTPIQQKAIPVARRGHDIFATAQTGTGKTAAFSLPLI 60

Query: 61  T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +LE G++  R   R LI  PTRELA Q+ADN + Y K  NL+VA + GG    +Q + 
Sbjct: 61  QQLLESGKSASRKTARALIFAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQERM 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H   G + + NIE LV DEADR+LDMGFI  ++ I   V    
Sbjct: 121 LENGVDILVATPGRLEEHIESGNVSVANIEFLVFDEADRILDMGFINAVRKIMLDVETNP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L ++S++ L+ PKRI V   ++TA T+ H          +K  LL +L
Sbjct: 181 QIMMFSATTSSQLNELSKDILRKPKRIAVERENTTAHTVAHVLYPV--DQERKTELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F N K+   ++   L+  G      HG+  Q +R + L  FKEG +++
Sbjct: 239 I-GRKNWQQVLVFVNYKETANDIVKELKLDGIKANVCHGDKAQSARRRALEEFKEGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V +E+   + 
Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVV 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNP 380
            +E LI++++  +  +L+   P
Sbjct: 358 QVENLIQQRIRRI--ELAGYEP 377


>gi|206579391|ref|YP_002239559.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae
           342]
 gi|290510541|ref|ZP_06549911.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. 1_1_55]
 gi|206568449|gb|ACI10225.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae
           342]
 gi|289777257|gb|EFD85255.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. 1_1_55]
          Length = 451

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 164/372 (44%), Positives = 241/372 (64%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ AV + GYV+PTPIQ + IP V+Q  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVMQGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TIL--EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L  ++  A+ R P R LIL PTRELAAQV +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QRLIDKEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++++EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVSLDSVEILVLDEADRMLDMGFIHDIRRVLAKLPAR 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +DE++ ++E  L NP  +EV   ++ +E I +H     +   ++K  LL 
Sbjct: 181 RQNLLFSATFSDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVH---FVDKNRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           QL+  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 QLI-GEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IE+L++K++
Sbjct: 357 LRDIERLLKKEI 368


>gi|77918185|ref|YP_356000.1| DNA/RNA helicase [Pelobacter carbinolicus DSM 2380]
 gi|77544268|gb|ABA87830.1| DNA/RNA helicase, ATP-dependent, DEAD-box family [Pelobacter
           carbinolicus DSM 2380]
          Length = 432

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 164/408 (40%), Positives = 252/408 (61%), Gaps = 13/408 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F      P+V   ++ AGYV PTPIQ + IP V+   DV G+AQTGTGKTA+F LP+L
Sbjct: 1   MEFNSFNFHPQVAKGIVAAGYVTPTPIQAQAIPSVIDGRDVMGLAQTGTGKTAAFALPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G R R+R    L++ PTRELA Q+     + G++  L    + GG+    Q   L
Sbjct: 61  QRLIDGPRGRLR---ALVVAPTRELAEQIHQAIGELGRHTGLRSMTVYGGVNIRPQIAGL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG D+++  PGR++DH  +  + ++NIE+LV+DEAD+M DMGF P ++ I   VP  RQ
Sbjct: 118 KRGVDIVVACPGRLIDHIGQKTIDLSNIEVLVLDEADQMFDMGFFPAVRQILRHVPAQRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   ++++S   L +P  ++V   ++ AET+ H      AQ+ +K A+L +LL
Sbjct: 178 TLLFSATMPAAIRRLSGEVLTSPMTVQVGN-TTPAETVSHALYPV-AQH-QKTAMLLELL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + D+ ++ ++F   K     L   L K G+   ++ GN+ Q  R + L+ F++G  +++
Sbjct: 235 SAVDS-RSVLVFTRTKHRAKRLGLQLGKAGYQATSLQGNLSQARRQEALTGFRDGKYEIL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV N+D+P+ AE Y+HRIGRTGRA R G+AFTLV  ED   + A
Sbjct: 294 VATDIAARGIDVSQVSHVINYDIPDTAEAYVHRIGRTGRASRKGEAFTLVTGEDNAMVRA 353

Query: 360 IEKLIEKKVD--WLNG-DLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           IEK+++  ++   + G D ++  PP  + D A   +A + +P   +S+
Sbjct: 354 IEKVLDASLERRTIEGFDYNTPAPP--RTDRAGRGNASRRSPRTTRSS 399


>gi|58039465|ref|YP_191429.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58001879|gb|AAW60773.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 432

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 168/395 (42%), Positives = 244/395 (61%), Gaps = 23/395 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L+P ++ A+ +AGYVKPTPIQ ++IPL+L+  D+ G+AQTGTGKTASF LP+L  
Sbjct: 9   FADLALAPTLLRALDEAGYVKPTPIQAQSIPLLLEGRDLLGLAQTGTGKTASFALPLLHR 68

Query: 63  LE-------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           L        K  ARV     L+L PTREL +Q+AD FE + ++  + V  + GG+    Q
Sbjct: 69  LAATPRPAPKNGARV-----LVLAPTRELVSQIADGFESFSRHQPVRVTTIFGGVSQVHQ 123

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K LE G D+++  PGR+LD   +G   ++ +E LV+DEAD+MLDMGF   I+ I + +P
Sbjct: 124 VKALEEGVDIIVAAPGRLLDLIEQGLCDLSQLETLVLDEADQMLDMGFAKPIERIVATLP 183

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R T+LFSATM   +  + E+ L+NP ++E+  PSST + I    +   A   KK ALL
Sbjct: 184 EDRHTVLFSATMPKSIAALVESLLRNPAKVEIAPPSSTVDRIAQSVMFLNAS-DKKAALL 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            QL      +   ++F  QK    ++C  L + G +  A+HGN  Q  R + L+ F+EG 
Sbjct: 243 AQL--RTPGIGQAVVFTLQKNIANDVCTFLTESGITAEALHGNRSQGQRERALNAFREGD 300

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARG+D+  V HV N D+P+  E+Y+HRIGRTGRAGR G A TL   E   
Sbjct: 301 VQVLVATDIAARGIDVDTVTHVINHDLPSLPESYVHRIGRTGRAGRSGFAITLCDAEQRA 360

Query: 356 HIDAIEKLIEKKVD------WLNGDL--SSLNPPL 382
            + A+E+ I + +D      W + +   S++ PP+
Sbjct: 361 WLHAVEREIGRTLDVHDSHEWHSEEARNSTMRPPV 395


>gi|83746106|ref|ZP_00943161.1| ATP-dependent RNA helicase RhlE [Ralstonia solanacearum UW551]
 gi|83727289|gb|EAP74412.1| ATP-dependent RNA helicase RhlE [Ralstonia solanacearum UW551]
          Length = 603

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 165/376 (43%), Positives = 239/376 (63%), Gaps = 11/376 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY +PTPIQ + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 59  MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 118

Query: 61  TILEKGRA-RVRMP-------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
             L   +  +V  P       R L+L PTRELAAQV ++   YGK   L   ++ GG+  
Sbjct: 119 HRLSAAQPNKVHTPHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 178

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q   L+RG D+++ TPGR+LDH  +  + +++IE+LV+DEADRMLDMGFI  I+ I +
Sbjct: 179 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 238

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           ++P  RQ LLFSAT +D+++ +++  L  P  IEV   ++TAET+E           +K 
Sbjct: 239 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPV--DRERKR 296

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL +L++  D     ++F   K     L   L + G S  AIHGN  Q +R + LS FK
Sbjct: 297 ELLAKLVRDND-WHQVLVFTRTKHGANRLAEQLTRDGISALAIHGNKSQSARTRALSEFK 355

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT++++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  +
Sbjct: 356 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 415

Query: 353 DIKHIDAIEKLIEKKV 368
           +   +  IE+LI++++
Sbjct: 416 EHGLLRDIERLIKREL 431


>gi|288936404|ref|YP_003440463.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
 gi|288891113|gb|ADC59431.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
          Length = 451

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 164/372 (44%), Positives = 241/372 (64%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ AV + GYV+PTPIQ + IP V+Q  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVMQGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TIL--EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L  ++  A+ R P R LIL PTRELAAQV +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QRLIDKEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++++EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVSLDSVEILVLDEADRMLDMGFIHDIRRVLAKLPAR 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +DE++ ++E  L NP  +EV   ++ +E I +H     +   ++K  LL 
Sbjct: 181 RQNLLFSATFSDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVH---FVDKNRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           QL+  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 QLI-GEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IE+L++K++
Sbjct: 357 LRDIERLLKKEI 368


>gi|145300478|ref|YP_001143319.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853250|gb|ABO91571.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 417

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 172/402 (42%), Positives = 244/402 (60%), Gaps = 11/402 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L LSP++   + + GY  PTPIQ + IP++L   D+   AQTGTGKTA+FVLP+L  
Sbjct: 6   FAELALSPRLQQTLSELGYAAPTPIQARAIPVILTGRDLMAGAQTGTGKTAAFVLPLLEQ 65

Query: 63  LEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L +  A    R  R L+L PTRELA QV D+  +YG+   LT AL+ GG+   AQ + L+
Sbjct: 66  LMQHPASDTARPIRALVLVPTRELAVQVFDSVVRYGQGTGLTSALVYGGVSIAAQVEALQ 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+LI TPGR+LDH  +G L + ++  LV DEADRMLDMGF+  I+ +   +P  RQT
Sbjct: 126 AGVDLLIATPGRLLDHLRQGALSLEHLSHLVFDEADRMLDMGFMDEIKALLKQIPADRQT 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D L  +S   L++P+ IEV   ++TA  +E    A   +  +K AL++ L++
Sbjct: 186 LLFSATCDDNLFALSRVLLRDPELIEVAPRNTTAAEVEQRVYAVDGE--RKVALVEHLIK 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      +IF   ++    L   L K G +  A HG++ Q +R K+L  F+ GT+Q +V
Sbjct: 244 VKGWAPV-LIFSRTRQGADKLAQQLGKAGINALAFHGDLSQGAREKVLLAFRAGTLQALV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+ +V N + P  AE+Y+HRIGRTGRAG  G A TL + ED   ++ +
Sbjct: 303 ATDVAARGLDILDLNYVINLEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEKV 362

Query: 361 EKLIEKKV--DWLNG---DLSSLNP-PLEKIDIAQHNHARKN 396
           E +++ ++   W  G   DL+   P P      AQ   ARK 
Sbjct: 363 EAVLDTRLPQQWFPGFEPDLTRFEPEPRRSGKAAQKQRARKQ 404


>gi|260459532|ref|ZP_05807787.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259035086|gb|EEW36342.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 477

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 165/396 (41%), Positives = 247/396 (62%), Gaps = 13/396 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA LG++  ++ A  +AG+ +P PIQ++ IP  L+  D+ GIAQTG+GKTA+F LP+L+ 
Sbjct: 22  FAALGVTGALLKATHNAGFTEPKPIQMQAIPPQLEGRDIFGIAQTGSGKTAAFALPILSK 81

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+ D  +   K  +++ AL++GG+   +Q KK+ 
Sbjct: 82  IIALGTKRRAKTTRALILAPTRELAVQIEDTIKILAKGAHVSTALVLGGVSRFSQVKKVA 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+LI TPGR+ D    G L++++ + LV+DE DRMLDMGFI  ++ I       RQT
Sbjct: 142 PGVDILIATPGRLTDLVREGDLILSDTKWLVLDEGDRMLDMGFINDVKRIAKATAPDRQT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM DE+ ++++  L+NP RIEV+  S+ A  I    V  +A+  +K  +L  +L 
Sbjct: 202 ALFSATMPDEIAELAKGLLKNPVRIEVSPQSTAAAEIVQGVV--FARTKQKRQVLSTML- 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   MK+ IIF   K     +   LE+ GF    IHGN  Q +R K L++F++G+++++V
Sbjct: 259 ADAAMKSVIIFSRTKHGADRVTKDLERDGFKAAVIHGNKSQNARQKALNDFRDGSVRILV 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+P + HV NFD+P+ AE+Y+HRIGRTGR G  G A TL    +   +  +
Sbjct: 319 ATDIAARGIDVPGISHVVNFDLPDEAESYVHRIGRTGRNGMDGIAITLCDPSENSKLRQV 378

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
           E++I  K+  +   L S +P        Q N A KN
Sbjct: 379 ERIIRTKLPIVADHLGSPDP--------QRNPAEKN 406


>gi|187927522|ref|YP_001898009.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12J]
 gi|187724412|gb|ACD25577.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
          Length = 560

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 163/376 (43%), Positives = 240/376 (63%), Gaps = 11/376 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY +PTPIQ + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILRGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMP-------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
             L   +  +V+ P       R L+L PTRELAAQV ++   YGK   L   ++ GG+  
Sbjct: 61  HRLSAAQPNKVQTPQGMRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q   L+RG D+++ TPGR+LDH  +  + +++IE+LV+DEADRMLDMGFI  I+ I +
Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           ++P  RQ LLFSAT +D+++++++  L  P  IEV   ++TAET+E           +K 
Sbjct: 181 ILPAKRQNLLFSATFSDDIRELADRLLDKPALIEVARRNTTAETVEQRIYPV--DRERKR 238

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL +L++  D     ++F   K     L   L + G    AIHGN  Q +R + L+ FK
Sbjct: 239 ELLAKLVRDND-WHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALTEFK 297

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT++++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  +
Sbjct: 298 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 357

Query: 353 DIKHIDAIEKLIEKKV 368
           +   +  IE+LI++++
Sbjct: 358 EHGLLRDIERLIKREL 373


>gi|148258225|ref|YP_001242810.1| ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1]
 gi|146410398|gb|ABQ38904.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
           (rhlE gene) [Bradyrhizobium sp. BTAi1]
          Length = 469

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 165/366 (45%), Positives = 226/366 (61%), Gaps = 6/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+  +  A+ +  Y  PTPIQ +TIP+ LQ  DV GIAQTGTGKTASF LP+L  
Sbjct: 4   FQDFNLADALTRALKEENYTTPTPIQAQTIPIALQGRDVIGIAQTGTGKTASFALPILHR 63

Query: 63  LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L + R +   +  R L+L PTREL+ Q+ D+F  YG++  LT AL IGG+P   Q + L 
Sbjct: 64  LLENRIKPQPKTARVLVLSPTRELSGQILDSFNTYGRHIRLTSALAIGGVPMGRQVRALM 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVL+ TPGR+LD      L +  +E LV+DEADRMLDMGFI  I+ I + +P  RQT
Sbjct: 124 PGVDVLVATPGRLLDLVQGNALKLTQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  ++ ++++  L++P R+ V   SST E I    +     +S K +LL QLL+
Sbjct: 184 LFFSATMPKDIAELADAMLRDPARVAVTPVSSTVERITQRVI--QVDHSAKPSLLAQLLK 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  +   ++F   K     +   LEK G    AIHGN  Q  R + L+ F+ G I+ +V
Sbjct: 242 DE-PVNRALVFTRTKHGADKVVKGLEKAGIPAQAIHGNKSQNHRERTLAAFRTGEIRTLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED-IKHIDA 359
           A+D+AARG+D+  V HV NFD+PN  E Y+HRIGRT RAG  G A +LVA  D + ++  
Sbjct: 301 ATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTARAGADGVAISLVAGADELSYLRD 360

Query: 360 IEKLIE 365
           IE+L +
Sbjct: 361 IERLTK 366


>gi|253990397|ref|YP_003041753.1| ATP-dependent RNA helicase RhlE [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781847|emb|CAQ85010.1| putative atp-dependent rna helicase rhle [Photorhabdus asymbiotica]
          Length = 444

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 177/425 (41%), Positives = 254/425 (59%), Gaps = 16/425 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   ++CA+ + GY  PTPIQ + IP+VL   D+   AQTGTGKTA F LPML
Sbjct: 1   MSFESLGLDADILCAIEEQGYSAPTPIQQQAIPVVLAGKDLLASAQTGTGKTAGFTLPML 60

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L       KGR   R  R LIL PTRELAAQV +N   Y K   L   ++ GG+    
Sbjct: 61  QLLNNSPVQTKGR---RPVRALILTPTRELAAQVGENVRNYSKYLRLRSLVVFGGVSINP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G D+L+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSRVEILVLDEADRMLDMGFIHDIRRVLNKL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT +DE++ ++   L NP  +EV   +S +E IE  FV  +    +K  L
Sbjct: 178 PPKRQNLLFSATFSDEIKNLASKLLHNPVSVEVARRNSASEQIEQ-FV-HFVDKKRKGEL 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L+ S++  +  ++F   K     L   L K G +  AIHGN  Q +R + L++FKEG
Sbjct: 236 LSFLIGSRN-WQQVLVFTRTKHGANRLAEQLNKDGVTASAIHGNKSQGARTRALADFKEG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+AARGLDI  + +V NF++PN +E+Y+HRIGRTGRA   G+A +LV  ++ 
Sbjct: 295 RIRVLVATDIAARGLDIDQLPYVVNFELPNVSEDYVHRIGRTGRADATGQALSLVCVDEH 354

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           K +  IE+L+++++  +       +P ++   I     AR +N    +     RR    S
Sbjct: 355 KLLKDIERLLKREIPRVAIPGYDPDPTIKAEPIQNGRQARGDN----RQKNSHRRSGAPS 410

Query: 415 SQKSH 419
            Q+SH
Sbjct: 411 RQRSH 415


>gi|116491614|ref|YP_811158.1| superfamily II DNA/RNA helicase [Oenococcus oeni PSU-1]
 gi|116092339|gb|ABJ57493.1| Superfamily II DNA and RNA helicase [Oenococcus oeni PSU-1]
          Length = 521

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 162/395 (41%), Positives = 246/395 (62%), Gaps = 14/395 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GLSP+++ AV   GY + TPIQ KTIPL++Q  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFEEFGLSPELLSAVKKHGYDEATPIQEKTIPLIIQGVDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++    +++    L++ PTRELA Q  +   K G + ++   ++ GG     Q   L+
Sbjct: 61  EEVDPKNPQIQ---ALVISPTRELAMQTEEELNKLGSDKHVKTQVVFGGYDIRRQIHALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR++DH NR  +    ++ LVIDEAD ML+MGF+  I+ I    P  RQT
Sbjct: 118 EHPQILVGTPGRLIDHLNRHTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPDDRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D+++K+   F+++P+ + + +   T + ++   V T  +Y K  A+ +    
Sbjct: 178 LLFSATMPDDIKKIGVKFMEDPEEVHIASKGLTIDLVDQYLVNT-REYEKFDAMTRLFDV 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   I+F   K+ V  L  +L+ +G+    IHG++DQ +RM+ L +FK+G +Q +V
Sbjct: 237 EQPEL--AIVFGRTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+DVP   E+Y+HRIGRTGRAG HG + T V + +I ++ AI
Sbjct: 295 ATDVAARGLDISGVTHVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVVRGEIDYLRAI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPP-LEKIDIAQHNHAR 394
           EKLI K+       +++L PP  E+  IA+  +A+
Sbjct: 355 EKLINKR-------MAALKPPSAEEAHIARLKNAK 382


>gi|187479233|ref|YP_787258.1| ATP-dependent RNA helicase [Bordetella avium 197N]
 gi|115423820|emb|CAJ50371.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
          Length = 477

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 167/399 (41%), Positives = 245/399 (61%), Gaps = 16/399 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FAD GL P ++ ++ + GY  PTPIQ + IP+V +  DV G AQTGTGKTA+F LP+L
Sbjct: 15  LTFADFGLHPLLLKSIAETGYTSPTPIQAQAIPVVAEGRDVMGAAQTGTGKTAAFTLPIL 74

Query: 61  ----TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                +     +  R P R LIL PTRELA QV +N ++Y  +  L  A++ GG+    Q
Sbjct: 75  HRLMPLANSSASPARHPVRALILTPTRELADQVYENVKRYSLHTPLRSAVVFGGVDIGPQ 134

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L +G +VL+ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF+P ++ I  L+P
Sbjct: 135 KEALRQGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLP 194

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT ++E++K+  ++L  P  IEV   ++TA+T+    +A       K A +
Sbjct: 195 PQRQGLLFSATFSNEIRKLGRSYLNQPVEIEVAARNATADTVTQ--IAYQMTGEAKRAAV 252

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++S+  +K  I+F N K     L   LE  G    +IHG+  Q  RMK L  FK G 
Sbjct: 253 VHLVKSRG-LKQVIVFSNTKIGTARLARQLELDGVKAESIHGDKSQADRMKALEAFKAGE 311

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGLD+  V  V N+D+P  AE+Y+HRIGRTGRAG  G+A  L   E+ +
Sbjct: 312 LEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPEEER 371

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           ++  IEKLI+++V     D+ S        ++  H+H R
Sbjct: 372 YLLDIEKLIKRQVPRGKLDIPS--------ELLAHSHGR 402


>gi|325833432|ref|ZP_08165881.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
 gi|325485356|gb|EGC87825.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
          Length = 560

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 160/370 (43%), Positives = 228/370 (61%), Gaps = 3/370 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FADLGLS   + AV   GY  PTP+Q++ IPLVL+  D+   A TGTGKTA+F+LP+L+
Sbjct: 55  NFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPILS 114

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +G+   R PR L++ PTRELA Q++    +  +     V  + GG P+  Q  ++ R
Sbjct: 115 TLPRGKRGKRAPRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVFGGTPYGPQINEIRR 174

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+ D  N+G + +  I+ LV+DEADRMLDMGF+P +  I    P  RQTL
Sbjct: 175 GTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPADRQTL 234

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +QK   + L +P  +E+     TA+T+E  F+   A + KK  LLQ LL+ 
Sbjct: 235 LFSATIDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQ-FMMPIANF-KKPELLQALLEE 292

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + + +  I+F   K    +   +L   G+   +IH +  Q  R + L NF+ G   ++VA
Sbjct: 293 KGSDRV-IVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVA 351

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+PDV HV NFD+P+  E+Y+HRIGRTGRAG  G A + V +E  + +  IE
Sbjct: 352 TDVLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFVTRESRRTMSDIE 411

Query: 362 KLIEKKVDWL 371
           KLI K V  +
Sbjct: 412 KLIGKNVPLM 421


>gi|171463886|ref|YP_001797999.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193424|gb|ACB44385.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 479

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 165/376 (43%), Positives = 239/376 (63%), Gaps = 8/376 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FAD GL P++  AV + GY  PTPIQ ++IP VL  +D+ G AQTGTGKTA+FVLP++
Sbjct: 31  ITFADFGLDPQIQKAVAEQGYNTPTPIQAQSIPHVLAGNDLMGAAQTGTGKTAAFVLPII 90

Query: 61  TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             + +  +    P     R L+L PTRELA QVA+N   Y K+ +L  A++ GG+  + Q
Sbjct: 91  QKILRHASNSASPARHPIRALVLTPTRELAVQVAENAASYSKHTDLRAAVVYGGVDMKEQ 150

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G ++LI T GR+LDH       ++ +EILV+DEADRMLDMGF+P +Q I SL+P
Sbjct: 151 VAILRNGVEILIATLGRLLDHIGSKVANLSQVEILVLDEADRMLDMGFLPDLQRIISLIP 210

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT + E++K+++++L++P  +EV   ++ A+T++   V   +   K+ A++
Sbjct: 211 AQRQTLLFSATFSPEIKKLAQSYLRSPVTVEVARQNAAADTVKQV-VHMVSSADKQRAIV 269

Query: 236 QQLLQSQDT--MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           + L         +  IIF N +     L  +LE+ G    AIHG+  Q  R   L  FK 
Sbjct: 270 KVLEARARAGLSRQCIIFTNSRLGCAKLSRTLERDGIKAGAIHGDKGQGERTLTLDAFKS 329

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I+ +VA+D+AARGLDIPD+  V N ++P  AE++IHRIGRTGRAG  G A  LV   +
Sbjct: 330 GAIEALVATDVAARGLDIPDMPCVINHELPYNAEDFIHRIGRTGRAGSKGDAIALVDLSE 389

Query: 354 IKHIDAIEKLIEKKVD 369
            + +D IEKL+++K+D
Sbjct: 390 KRLLDDIEKLMKRKLD 405


>gi|89900953|ref|YP_523424.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
 gi|89345690|gb|ABD69893.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
          Length = 574

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 160/374 (42%), Positives = 240/374 (64%), Gaps = 8/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AVL+ GY  PTPIQ + IP VL  HD+ G AQTGTGKTA+FVLPML
Sbjct: 1   MKFEELNLAPAIIKAVLEQGYETPTPIQAQAIPAVLDGHDLLGGAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRA-RVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L +  A R +      R L+L PTRELAAQV ++ + YGK   LT  ++ GG+    Q
Sbjct: 61  HKLSQSEAARNKFGGIGIRALVLTPTRELAAQVEESVQTYGKYVELTSTVIFGGVGMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             ++++G D+L+ TPGR+LD   +G L ++ ++ILV+DEADRMLDMGFI  ++ + ++VP
Sbjct: 121 ISRVKKGVDILVATPGRLLDLLQQGVLDLSQVQILVLDEADRMLDMGFIHDVKKVLAVVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT ++E+++++   L++P  I+V   ++T + I            KK ALL
Sbjct: 181 KDKQSLLFSATFSEEIRELAATLLKSPLTIQVTPRNTTVQRITQLI--HPVGRGKKKALL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             ++Q ++     ++F   K    N+   L K G +  A+HGN  Q +R + L+ FK G 
Sbjct: 239 AHIVQERN-WSQVLVFTRTKFGANNVAEFLTKSGINAMALHGNKSQAARTQALAGFKSGD 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ +VA+D+AARG+DI D+ HV N+D+PN  E+Y+HRIGRTGRAG  G A  LV  ++  
Sbjct: 298 IRALVATDIAARGIDIDDLPHVVNYDIPNVCEDYVHRIGRTGRAGADGAAVNLVCLDEEG 357

Query: 356 HIDAIEKLIEKKVD 369
            + AIE+  ++ ++
Sbjct: 358 FMQAIERFTKQDIE 371


>gi|315499118|ref|YP_004087922.1| dead/deah box helicase domain protein [Asticcacaulis excentricus CB
           48]
 gi|315417130|gb|ADU13771.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB
           48]
          Length = 605

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 154/371 (41%), Positives = 233/371 (62%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS  ++  +   GY  PTPIQ + IP++L +HD+ GIAQTGTGKTA+F LP+L  
Sbjct: 4   FKDLGLSASLLSTLEKEGYHTPTPIQAQAIPILLNKHDLLGIAQTGTGKTAAFALPILHH 63

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R     R  R L+L PTRELA Q+AD+F+ Y K   L +A + GG+ +  Q K L+
Sbjct: 64  ILSNRIIPAPRSCRVLVLSPTRELATQIADSFKAYSKGLGLQIATIFGGVKYGPQYKALQ 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGR++DH  +  + +  +E LV+DEAD+MLDMGFI  I+ + S +P  RQ 
Sbjct: 124 GGIDILVATPGRLIDHIEQKTIDLKAVEHLVLDEADQMLDMGFIKPIRQVASRLPAQRQN 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+  ++   L NPK++E+   ++TAE +    +  + +  +K ALL +L  
Sbjct: 184 LFFSATMPKEIAGLANELLTNPKKVEITPEATTAERVTQQVI--FIEQQRKRALLSELY- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + +   +IF   K+    +   L+  G    AIHG+ +Q  R + L  FK G ++ +V
Sbjct: 241 ADEKLARTLIFTRTKRGADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFKAGRVRALV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ +V HV N+++P  AE Y+HRIGRT RAG+ G + TLVA ++ K +  I
Sbjct: 301 ATDIAARGIDVDNVTHVINYELPFVAEAYVHRIGRTARAGKEGHSITLVADDERKLLKDI 360

Query: 361 EKLIEKKV-DW 370
           E++  +++  W
Sbjct: 361 ERITRQRIPSW 371


>gi|317492534|ref|ZP_07950962.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919526|gb|EFV40857.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 465

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 164/371 (44%), Positives = 240/371 (64%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS +++ AV + GY +PTPIQ + IP+VLQR D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDTLGLSAELLRAVEEQGYREPTPIQSQAIPVVLQRRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGR--ARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            IL +    A+ R P R LIL PTRELAAQ+ +N   Y K  NL   ++ GG+    Q  
Sbjct: 61  QILSQDTQPAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQHAVDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE+++++   L NP  +EV   ++ +E +       +    +K  LL Q
Sbjct: 181 RQNLLFSATFSDEIKELANKLLTNPASVEVARRNTASEQVAQSV--HFVDKRRKRELLSQ 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ + +  +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK G+I+
Sbjct: 239 LIGTHN-WQQVLVFTRTKYGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGSIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAECTGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKV 368
             IE+L+++++
Sbjct: 358 RDIERLLKREI 368


>gi|270260820|ref|ZP_06189093.1| ATP-dependent RNA helicase [Serratia odorifera 4Rx13]
 gi|270044304|gb|EFA17395.1| ATP-dependent RNA helicase [Serratia odorifera 4Rx13]
          Length = 452

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 164/374 (43%), Positives = 239/374 (63%), Gaps = 12/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS +++ AV + GY +PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEK------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L K      GR   R  R LIL PTRELAAQ+ +N E Y K+  L   ++ GG+    
Sbjct: 61  QLLSKHDHPIKGR---RPVRALILTPTRELAAQIGENVEAYSKHLRLRSLVVFGGVSINP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT +D+++ ++   L NP  +EV   ++ +E IE      +    +K  L
Sbjct: 178 PAKRQNLLFSATFSDDIKALANKLLHNPASVEVARRNTASEQIEQSV--HFVDKKRKREL 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L Q++   D  K  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G
Sbjct: 236 LSQMIGEGD-WKQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ 
Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 354

Query: 355 KHIDAIEKLIEKKV 368
           K +  IE+L+++++
Sbjct: 355 KLLRDIERLLKREI 368


>gi|262041112|ref|ZP_06014330.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041562|gb|EEW42615.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 519

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 165/372 (44%), Positives = 239/372 (64%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ AV + GYV+PTPIQ + IP VLQ  D+   AQTGTGKTA F LP+L
Sbjct: 69  MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 128

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQV +N   Y K  N+   ++ GG+    Q  
Sbjct: 129 QRLIQNEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMM 188

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 189 KLRGGVDILVATPGRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDIRRVLAKLPAR 248

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +DE++ ++E  L NP  +EV   ++ +E I +H     +   ++K  LL 
Sbjct: 249 RQNLLFSATFSDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVH---FVDKNRKRELLS 305

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           QL+  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 306 QLI-GEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGI 364

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 365 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 424

Query: 357 IDAIEKLIEKKV 368
           +  IE+L++K++
Sbjct: 425 LRDIERLLKKEI 436


>gi|119504065|ref|ZP_01626146.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2080]
 gi|119460068|gb|EAW41162.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2080]
          Length = 437

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 159/366 (43%), Positives = 234/366 (63%), Gaps = 4/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ AV D GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSTLGLSESLLKAVADEGYTTPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L KG+ A+    R L+L PTRELAAQVA++ + YGK  NL  A++ GG+    Q  +L
Sbjct: 61  HGLSKGQPAKANQVRALVLTPTRELAAQVAESVDIYGKYLNLRSAVVFGGVKINPQMMRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+LI TPGR+LD + +  +    +E+L++DEADRMLDMGFI  I+ I   +P  RQ
Sbjct: 121 RKGVDILIATPGRLLDLYQQNAMSFQKLEVLILDEADRMLDMGFIHDIRRIMKALPNKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +++++ +++  + NP  I V   +STA ++           ++K  LL +L+
Sbjct: 181 NLMFSATFSEDIRDLAKTIVNNPVEISVTPRNSTAVSVTQWIHPV--DKNQKRHLLVELI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q   +  ++F   K+    L   L+K+G    AIHGN  Q +R + LS FK G ++++
Sbjct: 239 -NQHNWEQVLVFSRTKRGANRLAEFLDKKGIQAAAIHGNKSQGARTRALSEFKSGKLRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N D+P  A++Y+HRIGRTGRAG  G+A +LV+ ++ + +  
Sbjct: 298 VATDIAARGLDIEQLPQVVNLDLPEVAQDYVHRIGRTGRAGATGQAISLVSADEAQLLQD 357

Query: 360 IEKLIE 365
           IE+LI+
Sbjct: 358 IERLIQ 363


>gi|91785132|ref|YP_560338.1| putative ATP-dependent RNA helicase 1 [Burkholderia xenovorans
           LB400]
 gi|91689086|gb|ABE32286.1| Putative ATP-dependent RNA helicase 1 [Burkholderia xenovorans
           LB400]
          Length = 543

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 167/373 (44%), Positives = 232/373 (62%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 23  MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 82

Query: 61  TILEKGRARV-----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L    A       R  R LIL PTRELAAQV ++   YGK   L   ++ GG+    Q
Sbjct: 83  QRLNSSPAVANGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ 142

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G D+++ TPGR+LDH  +  + ++++EILV+DEADRMLDMGFI  I+ + + +P
Sbjct: 143 IGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP 202

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT +DE++ +++N L +P  IEV   ++TAET+            KK  LL
Sbjct: 203 PKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPV--DRDKKRELL 260

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + L+ FK+GT
Sbjct: 261 THLIKQHNWFQV-LVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGT 319

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARG+DI  + HV N+D+PN  E+Y+HRIGRTGRAG  G+A +LV  ++++
Sbjct: 320 LQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQ 379

Query: 356 HIDAIEKLIEKKV 368
            +  IEKLI++ V
Sbjct: 380 LLKDIEKLIKRPV 392


>gi|260576594|ref|ZP_05844582.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
 gi|259021198|gb|EEW24506.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
          Length = 453

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 163/388 (42%), Positives = 238/388 (61%), Gaps = 10/388 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F  LGLSPK+   +  AGY KPTPIQ++ IPL++Q  D+ G+AQTGTGKTA+F LP+L  
Sbjct: 4   FDSLGLSPKLAKGLEKAGYTKPTPIQLQAIPLIMQGRDLMGLAQTGTGKTAAFGLPLLHR 63

Query: 62  ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L+ G     R  R LI+ PTREL +Q+++  E + K   + V  + GG     Q+++L 
Sbjct: 64  LLDIGHPPAPRSVRALIMAPTRELVSQISEALEVFTKGTAVKVVTVTGGASLFRQSERLA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGADVL+ TPGR++D  +R  L + +   LV+DEAD+MLDMGFI  ++ I   +P  RQT
Sbjct: 124 RGADVLVATPGRLIDLLDRNALTLEHCGYLVLDEADQMLDMGFIHALKKIAKHLPLKRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +++ +L++P +++V  P    E I       Y     K  LL++ L+
Sbjct: 184 LLFSATMPKLIEDLAQTYLRDPVKVQVAPPGKPIEAIVQGV--HYTPQGDKARLLEEYLK 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +    +  ++F   K     L   L   GF   +IHGN  Q  R + LS F+EG + ++V
Sbjct: 242 THPG-EMALVFGRTKHGSEKLMKLLVAWGFKAGSIHGNKSQNQRERTLSEFREGALDVLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  V HV+N+D+PN  ENY+HRIGRT RAG  GKA    A  +++ I AI
Sbjct: 301 ATDVAARGIDISGVRHVYNYDMPNVPENYVHRIGRTARAGADGKAVAFCAPAEMEEIQAI 360

Query: 361 EKLIEKKVDWLNG-----DLSSLNPPLE 383
           EKL++ ++  L G     DL+  + P +
Sbjct: 361 EKLLKTRIPVLGGAPWAADLAGASKPAQ 388


>gi|283784562|ref|YP_003364427.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
 gi|282948016|emb|CBG87580.1| putative ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
          Length = 451

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 162/372 (43%), Positives = 240/372 (64%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P+++ A+ + GY +PTP+Q + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPEILRAIAEQGYREPTPVQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I ++  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITQQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D++++++E  L NP  IEV   ++ +E + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKRLAEKLLHNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q++  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|319426187|gb|ADV54261.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 467

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 158/363 (43%), Positives = 228/363 (62%), Gaps = 4/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V A+ + GY  PTPIQ K IP++L   +V G AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSDPIVKAITELGYASPTPIQTKAIPVILSGKNVLGAAQTGTGKTASFVLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +     + R +  R +IL PTRELA QV +N  +Y K   LT   + GG+    Q KKL
Sbjct: 61  QMFADAPKIRPKRVRAIILTPTRELAVQVEENIRQYAKYLPLTSMAMYGGVDAAPQKKKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + + +LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDELSVLVLDEADRMLDMGFIEDINKIIEKLPTQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++ +++  ++NP  IE++  ++TA  I+     T     KK ALL  L+
Sbjct: 181 NLLFSATLSKQVRVLAKTAVENPVEIEISRNTATAPQIDQWL--TTVDKDKKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q      +IF   K+    L   LEK+  S  A H    Q  R ++L++FK G +  +
Sbjct: 239 KEQ-AWDQALIFIQTKQGAAKLVSQLEKRDISAEAFHSGRSQAVREQLLADFKSGKLAFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +A+RG+DI  +  V N+D+P+ A++YIHRIGRTGRAG HG+A + V+K+D K++ A
Sbjct: 298 VATGVASRGIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGEHGEAISFVSKDDFKNLCA 357

Query: 360 IEK 362
           IE+
Sbjct: 358 IER 360


>gi|33594279|ref|NP_881923.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|33564354|emb|CAE43658.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|332383691|gb|AEE68538.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
          Length = 477

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 170/424 (40%), Positives = 254/424 (59%), Gaps = 18/424 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FAD GL P ++  + D GY  PTPIQ + IP+V++  DV G AQTGTGKTA+F LP+L  
Sbjct: 19  FADFGLHPLLLKLIADTGYTNPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHR 78

Query: 61  --TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              +     +  R P R LIL PTRELA QV ++ ++Y  +  L  A++ GG+    Q +
Sbjct: 79  LMPLANTSASPARHPVRALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKE 138

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG +VL+ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF+P ++ I  L+P  
Sbjct: 139 ALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQ 198

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT ++E++K+  ++L +P  IEV   ++TA+T+    +A       K A +  
Sbjct: 199 RQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATADTVTQ--IAYQMHGDTKRAAVVH 256

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++S+  +K  I+F N K     L   LE+ G    +IHG+  Q  RMK L  FK G ++
Sbjct: 257 LVKSRG-LKQVIVFSNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKAGDLE 315

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  V  V N+D+P  AE+Y+HRIGRTGRAG  G+A  L   ++ +++
Sbjct: 316 VLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEERYL 375

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IEKLI+++V     +L +        D+   +H R  +    +  G DR +    +  
Sbjct: 376 LDIEKLIKRQVPRGKLELPA--------DLVARSHGRDRD--APRERGADRHRGERCTSG 425

Query: 418 SHIP 421
           +  P
Sbjct: 426 AAAP 429


>gi|290891221|ref|ZP_06554283.1| hypothetical protein AWRIB429_1673 [Oenococcus oeni AWRIB429]
 gi|290479185|gb|EFD87847.1| hypothetical protein AWRIB429_1673 [Oenococcus oeni AWRIB429]
          Length = 521

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 162/395 (41%), Positives = 246/395 (62%), Gaps = 14/395 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GLSP+++ AV   GY + TPIQ KTIPL++Q  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFEEFGLSPELLSAVKKHGYDEATPIQEKTIPLIIQGVDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++    +++    L++ PTRELA Q  +   K G + ++   ++ GG     Q   L+
Sbjct: 61  EEVDPKNPQIQ---ALVISPTRELAMQTEEELNKLGSDKHVKTQVVFGGYDIRRQIHALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR++DH NR  +    ++ LVIDEAD ML+MGF+  I+ I    P  RQT
Sbjct: 118 EHPQILVGTPGRLIDHLNRHTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPDDRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D+++K+   F+++P+ + + +   T + ++   V T  +Y K  A+ +    
Sbjct: 178 LLFSATMPDDIKKIGVKFMKDPEEVHIASKGLTIDLVDQYLVNT-REYEKFDAMTRLFDV 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   I+F   K+ V  L  +L+ +G+    IHG++DQ +RM+ L +FK+G +Q +V
Sbjct: 237 EQPEL--AIVFGRTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+DVP   E+Y+HRIGRTGRAG HG + T V + +I ++ AI
Sbjct: 295 ATDVAARGLDISGVTHVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVVRGEIDYLRAI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPP-LEKIDIAQHNHAR 394
           EKLI K+       +++L PP  E+  IA+  +A+
Sbjct: 355 EKLINKR-------MAALKPPSAEEAHIARLKNAK 382


>gi|86748916|ref|YP_485412.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
 gi|86571944|gb|ABD06501.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
          Length = 491

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 163/365 (44%), Positives = 229/365 (62%), Gaps = 6/365 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F D GL+  +  A+ +  Y  PTPIQ +TIPL L   DV GIAQTGTGKTASF LP+L  
Sbjct: 10  FQDFGLADPISRALQEENYTVPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILHR 69

Query: 62  ILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ILE + + + +  R L+L PTREL+ Q+ D+F  YG++  L+  L IGG+P   Q + L 
Sbjct: 70  ILENRIKPQPKTCRVLVLSPTRELSGQILDSFNAYGRHIRLSATLAIGGVPMGRQVRSLM 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G +VL+ TPGR+LD      L +  +E LV+DEADRMLDMGFI  I+ I + +P  RQT
Sbjct: 130 QGVEVLVATPGRLLDLVQSNALRLGQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQT 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  ++  ++E  L++P R+ V   +ST E I    +  +  +S K A+L  +LQ
Sbjct: 190 LFFSATMPKDIADLAEQMLRDPARVAVTPVASTVERINQRVI--HLDHSAKPAMLATILQ 247

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD +   ++F   K     +   L++ G +  AIHGN  Q  R ++L+ F+ G ++ +V
Sbjct: 248 -QDGVNQALVFTRTKHGADKVVKGLQRAGITADAIHGNKSQNYRERVLAAFRTGELRTLV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDA 359
           A+D+AARG+D+  V HV NFD+PN  E Y+HRIGRT RAG  G A +L A  E+  ++  
Sbjct: 307 ATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGAEGTAISLCAGGEETGYLRD 366

Query: 360 IEKLI 364
           IEKLI
Sbjct: 367 IEKLI 371


>gi|39996017|ref|NP_951968.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
 gi|39982782|gb|AAR34241.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
          Length = 447

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 170/420 (40%), Positives = 248/420 (59%), Gaps = 25/420 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF   G  P V   +  AGY  PTPIQ + IP V+   DV G+AQTGTGKTA+F LP+L
Sbjct: 1   MDFKSFGFHPAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L++G R RVR    L++ PTRELA Q+ D+F   G+   L    + GG+    Q +KL
Sbjct: 61  HRLQQGERGRVR---ALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA+V++  PGR+LDH  +G + ++ +E+LV+DEAD+M DMGF+P I+ +   +P  RQ
Sbjct: 118 KAGAEVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  +++ ++++ L +P  ++V T  + A T+ H       +   K  LL +LL
Sbjct: 178 TLLFSATMPIDIRTLAQDILVDPVTVQVGT-VAPAVTVAHALYPV--EQHLKTPLLLELL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  DT ++ +IF   K     L   LEK G+   ++ GN+ Q  R   L  F++GT Q++
Sbjct: 235 RHTDT-ESVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQIL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV N+D+P+ AE YIHRIGRTGRA R G AFTLV  +D   + A
Sbjct: 294 VATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGAMVRA 353

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+              SL  P+E+  +   ++   + P P+K   F R  +     + H
Sbjct: 354 IER--------------SLGAPIERRTVQGFDY---SVPAPKKDVEFARPPREPRQARPH 396


>gi|325289283|ref|YP_004265464.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964684|gb|ADY55463.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 382

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 161/371 (43%), Positives = 238/371 (64%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   ++ A+   GY  PTPIQ + IP VL+  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MKFEELNIITPIMKALKAEGYEAPTPIQERAIPAVLKGRDLLGCAQTGTGKTAAFSIPLL 60

Query: 61  TILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            IL + R   R PRT   LIL PTRELA Q  +N   YGK   +   ++ GG+  +AQ +
Sbjct: 61  QILSRERINERAPRTIRALILAPTRELALQTGENLRAYGKYLGIKHTVIFGGVSQDAQTR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            ++ G D+L+ TPGR+LD   +G + +++I++LV+DEADRMLDMGF   ++ I + +P  
Sbjct: 121 AMKAGVDILVATPGRLLDLMGQGYVRLDHIKLLVLDEADRMLDMGFAHDMKRILAKLPAA 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTLLFSATM  E++ ++   L NP +IEV   SSTA+TI+      + + S K ALL +
Sbjct: 181 KQTLLFSATMPPEMKAMAGAILSNPVKIEVAPVSSTADTIDQSVY--FVEKSGKKALLIE 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL++Q ++ + ++F   K    N+  +LEK      AIHGN  Q +R   L+NFK    +
Sbjct: 239 LLRNQ-SVDSALVFTRTKHGADNVVRALEKARIKAQAIHGNKSQAARQTALNNFKAKRTR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HV NFD+PN  E Y+HRIGRTGRAG  G A +    E+  ++
Sbjct: 298 VLVATDIAARGIDVQELSHVINFDLPNIPETYVHRIGRTGRAGMGGTALSFCDDEEKTYL 357

Query: 358 DAIEKLIEKKV 368
             I+KLI +++
Sbjct: 358 RDIQKLIAREI 368


>gi|154247132|ref|YP_001418090.1| DEAD/DEAH box helicase domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154161217|gb|ABS68433.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus
           Py2]
          Length = 559

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 154/365 (42%), Positives = 235/365 (64%), Gaps = 5/365 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL+  +V A+ +A +V PTPIQ + IP +L   D+ GIAQTGTGKTA+F LP+L  
Sbjct: 39  FSNLGLAEPIVRALTEAQHVTPTPIQAEAIPQILAGRDLIGIAQTGTGKTAAFALPILDR 98

Query: 63  LEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L +   R   +  R L+L PTREL+ Q+ +NFEK+G++ N++V+L IGG+P   Q + L 
Sbjct: 99  LVRHPHRPEPKSVRALVLSPTRELSGQIVENFEKFGRHANISVSLAIGGVPMGRQIRALS 158

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVL+ TPGR++D      + ++ +E+LV+DEAD+MLDMGF+  I+ I   +P  R +
Sbjct: 159 RGVDVLVATPGRLIDLVENHAVKLDQVEVLVLDEADQMLDMGFVHAIRAIVRRLPHKRHS 218

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   + +++ + L++P R+ V   + TA+ +E   +      + K  LL ++L 
Sbjct: 219 LFFSATMPHAIAELAGSMLRDPVRVAVTPVAKTADRVEQRVI--LVDKANKGQLLAEVLS 276

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++D +   ++F   K     +   L K G +  AIHGN  Q  R ++L+ F+EG I+ ++
Sbjct: 277 TED-IDRALVFSRTKHGADKVVRVLAKAGIAAEAIHGNKSQNQRDRVLAAFREGKIRTLI 335

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV NFD+PN  E+Y+HRIGRT RAGR G A +    E+   + +I
Sbjct: 336 ATDIAARGIDVTGVSHVINFDLPNVPESYVHRIGRTARAGREGIAISFCDHEERAFLRSI 395

Query: 361 EKLIE 365
           EKLI+
Sbjct: 396 EKLIK 400


>gi|330009971|ref|ZP_08306668.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. MS 92-3]
 gi|328534645|gb|EGF61216.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. MS 92-3]
          Length = 509

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 165/372 (44%), Positives = 239/372 (64%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ AV + GYV+PTPIQ + IP VLQ  D+   AQTGTGKTA F LP+L
Sbjct: 59  MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 118

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQV +N   Y K  N+   ++ GG+    Q  
Sbjct: 119 QRLIQNEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMM 178

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 179 KLRGGVDILVATPGRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDIRRVLAKLPAR 238

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +DE++ ++E  L NP  +EV   ++ +E I +H     +   ++K  LL 
Sbjct: 239 RQNLLFSATFSDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVH---FVDKNRKRELLS 295

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           QL+  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 296 QLI-GEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGI 354

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 355 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 414

Query: 357 IDAIEKLIEKKV 368
           +  IE+L++K++
Sbjct: 415 LRDIERLLKKEI 426


>gi|224825987|ref|ZP_03699090.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224601624|gb|EEG07804.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 562

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 163/369 (44%), Positives = 230/369 (62%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGLS  ++ AV + GY  PTPIQ + IP V++  D+   AQTGTGKTA F LP+L
Sbjct: 4   IKFTDLGLSEPLLRAVAETGYTTPTPIQAQAIPQVIKGGDLLAAAQTGTGKTAGFTLPLL 63

Query: 61  TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L      ++  PR L+L PTRELAAQV ++   YGK       ++ GG+    Q   L
Sbjct: 64  HRLGPAPTHLKGRPRALVLTPTRELAAQVEESVRTYGKYLPHKSMVMFGGVGINPQIAAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+L+ TPGR+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ + +L+P  RQ
Sbjct: 124 RKPLDILVATPGRLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIHDIKKVLALLPAKRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ +++  L NP+ +EV   ++  E +E           KK  LL  L+
Sbjct: 184 NLLFSATFSDEIKVLADRLLNNPQLVEVARRNTANELVEQKV--HLVDRDKKTELLTHLI 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            SQ      ++F   K     L   L+K G +  AIHGN  Q +R K L++FK  T+Q++
Sbjct: 242 -SQGDWHQVLVFTRTKHGANRLAEKLDKSGITAAAIHGNKSQNARTKALADFKANTLQVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAG  G+A +LV  ++ K +  
Sbjct: 301 VATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGNEGEAVSLVCVDEFKFLKD 360

Query: 360 IEKLIEKKV 368
           IEKLI+K +
Sbjct: 361 IEKLIKKDI 369


>gi|260223291|emb|CBA33706.1| Putative ATP-dependent RNA helicase rhlE [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 608

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 159/374 (42%), Positives = 240/374 (64%), Gaps = 8/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +L L+P +V AV + GY  PT IQ + IPLVL+ HD+ G AQTGTGKTA+F LP+L
Sbjct: 21  MNFEELKLAPAIVKAVREQGYETPTAIQAQAIPLVLEGHDLLGGAQTGTGKTAAFTLPLL 80

Query: 61  TILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L   R+          R L+L PTRELAAQV ++  +YGK   L+  ++ GG+    Q
Sbjct: 81  HRLSMSRSAQNKFGGTGIRALVLTPTRELAAQVEESVRQYGKYLQLSSTVVFGGVGMNPQ 140

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             K+++G D+L+ TPGR+LD   +G L +  +++LV+DEADRMLDMGFI  ++ + +LVP
Sbjct: 141 ISKVKKGVDILVATPGRLLDLAQQGMLDLGQVQMLVLDEADRMLDMGFIHDVKKVLALVP 200

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE+++++   L+NP+ ++V   ++T + I    V       KK ALL
Sbjct: 201 KEKQSLLFSATFSDEIRELANGLLKNPQSVQVTPRNTTVQRITQ--VIHPVGRGKKKALL 258

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             ++  Q+     ++F   K    N+   LEK G +  A+HGN  Q +R + LS FK G 
Sbjct: 259 AHIINEQN-WSQVLVFTRTKFGANNVAEFLEKNGITAMALHGNKSQAARTQALSGFKSGD 317

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VA+D+AARG+DI D+ HV N+++PN +E+Y+HRIGRTGRAG  G A  LV  ++  
Sbjct: 318 VRALVATDIAARGIDIDDLPHVVNYEIPNVSEDYVHRIGRTGRAGADGAAVNLVCLDEEG 377

Query: 356 HIDAIEKLIEKKVD 369
            +  IE+  ++K++
Sbjct: 378 FMQDIERFTKQKIE 391


>gi|152992886|ref|YP_001358607.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
 gi|151424747|dbj|BAF72250.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
          Length = 457

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 161/370 (43%), Positives = 239/370 (64%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+  ++ A+ D GY  PTPIQ + IP+V++  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTNLGLNESLLKAIKDQGYTSPTPIQKQAIPVVIEGKDVLAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +   ++  +  R L+L PTRELAAQVA++ + YGK    T  ++ GG+    Q   
Sbjct: 61  ERLSETHPKMGKKQIRVLVLTPTRELAAQVAESIKTYGKYMKYTSTVVYGGVGINPQLAT 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           + RG D++I TPGR+LD   +  +  + +E LV+DEADRMLDMGFI  I+ +  ++P  R
Sbjct: 121 IRRGVDIVIATPGRLLDIAGQQGIDFSALETLVLDEADRMLDMGFIHDIKKLMKMMPKER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT + E++K++   L+NP  +EV   ++TA+ I    V  +   S+K  LL QL
Sbjct: 181 QTLLFSATFSLEIKKLASGLLKNPVLVEVARENTTADQISQ--VVHFVDKSRKRELLSQL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++++D  +  ++F   K     L   LE+ G S  AIHGN  Q +R K L++FK   I++
Sbjct: 239 IKTKD-WRQVLVFTRTKHGANRLTKQLEEAGISAAAIHGNKSQGARTKALASFKANEIRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV N+++PN  E+Y+HRIGRTGRAG+ G+A +LV  ++ K + 
Sbjct: 298 LVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGQSGEAVSLVCVDEHKLLF 357

Query: 359 AIEKLIEKKV 368
            IEK I+ ++
Sbjct: 358 DIEKFIKSEI 367


>gi|295101226|emb|CBK98771.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
           L2-6]
          Length = 648

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 156/375 (41%), Positives = 234/375 (62%), Gaps = 4/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  ++ AV +AGY  P+PIQ   IP VL+  D+ G AQTGTGKTA+F LPML
Sbjct: 1   MTFNDLKLSAPLLKAVSEAGYETPSPIQASAIPPVLEGRDLMGCAQTGTGKTAAFALPML 60

Query: 61  TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L     R +   R LIL PTRELA Q+ ++F+ YGK   L   ++ GG+    Q + +
Sbjct: 61  DRLSAAAPRRKGAVRALILTPTRELALQIGESFDAYGKYLKLRSTVIFGGVGQAPQVEAI 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+LI  PGR+ D   +G + ++N+E+ V+DEADRMLDMGF+  ++ + + +P  RQ
Sbjct: 121 RKGVDILIACPGRLNDLIGQGHIDLSNLEVFVLDEADRMLDMGFVHDVKKVIAKLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  E+++++   L +P  ++V+  SST E I+      + +   K  LL  L+
Sbjct: 181 NLMFSATMPKEIEQLAAGILHDPAFVKVDPVSSTVERIDQSLY--FVEKGNKKLLLPWLI 238

Query: 240 QS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++    ++N ++F   K     +   L KQG +  AIHGN  Q +R+  L  FKEG  ++
Sbjct: 239 KNLTPPVQNALVFSRTKHGADKIARDLTKQGITAAAIHGNKSQTARVAALEGFKEGKTRV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI ++ HVFN+D+P   E Y+HRIGRT RAG  G A +  A E+++++ 
Sbjct: 299 LVATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEMEYLA 358

Query: 359 AIEKLIEKKVDWLNG 373
            IEKL  +K+  ++G
Sbjct: 359 GIEKLNRRKIPVVSG 373


>gi|293397166|ref|ZP_06641440.1| ATP-dependent RNA helicase RhlE [Serratia odorifera DSM 4582]
 gi|291420637|gb|EFE93892.1| ATP-dependent RNA helicase RhlE [Serratia odorifera DSM 4582]
          Length = 447

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 164/371 (44%), Positives = 239/371 (64%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS +++ AV + GY +PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPVL 60

Query: 61  TILEKGRARV--RMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L K    V  R P R LIL PTRELAAQ+ +N + Y K+  L   ++ GG+    Q  
Sbjct: 61  QLLSKHDHAVKGRRPVRALILTPTRELAAQIGENVQAYSKHLRLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + S +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLSKLPPK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E IE      +    +K  LL Q
Sbjct: 181 RQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIEQSV--HFVDKKRKRELLSQ 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++   D  +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G I+
Sbjct: 239 MIGEGD-WRQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLL 357

Query: 358 DAIEKLIEKKV 368
             IE+L+++++
Sbjct: 358 RDIERLLKREI 368


>gi|84499824|ref|ZP_00998112.1| DEAD/DEAH box helicase [Oceanicola batsensis HTCC2597]
 gi|84392968|gb|EAQ05179.1| DEAD/DEAH box helicase [Oceanicola batsensis HTCC2597]
          Length = 451

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 157/381 (41%), Positives = 236/381 (61%), Gaps = 9/381 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  LGL P +   + + G  +PTPIQ K IP  ++  D+ G+AQTGTGKTA+F LP+L
Sbjct: 1   MDFNSLGLLPCITENLAELGLTRPTPIQTKAIPHAMEGRDILGLAQTGTGKTAAFGLPLL 60

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           T +  E+G+   +  R L+L PTRELA Q+ +N + Y K  ++ V L++GG    AQ  +
Sbjct: 61  TAIAREQGKPEPKTVRGLVLAPTRELAKQIVENLQAYAKGTHMRVGLVVGGASINAQVNR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG DVL+ TPGR++D  +R  + ++    LV+DEAD+MLD+GFI  ++ I +L+P TR
Sbjct: 121 LARGTDVLVATPGRLIDLLDRRAVTLSQTRFLVLDEADQMLDLGFIHALRRIATLLPQTR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCALLQ 236
           QT+LFSATM   + +++ ++L +P R+E   P   A+ IE    F+A      +K ALL 
Sbjct: 181 QTMLFSATMPKLMAEIAGSYLTDPVRVETAPPGKPADKIEQSVHFIA----QGEKTALLI 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + L +       I+F   K     L  +L   G++  A+HGN  Q  R + +  F+EG  
Sbjct: 237 EHLDAHRA-DPAIVFARTKHGSERLMKNLLAAGYAAVAVHGNKSQGQRDRAIREFREGEA 295

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DIP + +V+N+D+PN A+NY+HRIGRT RAGR G A    A  ++  
Sbjct: 296 MVLVATDVAARGIDIPGIRYVYNYDLPNVADNYVHRIGRTARAGRDGTAIAYCAPAEMGE 355

Query: 357 IDAIEKLIEKKVDWLNGDLSS 377
           +  I+KL+ K++    G + S
Sbjct: 356 LRDIQKLLGKELPVSGGTVWS 376


>gi|186683738|ref|YP_001866934.1| DEAD/DEAH box helicase domain-containing protein [Nostoc
           punctiforme PCC 73102]
 gi|186466190|gb|ACC81991.1| DEAD/DEAH box helicase domain protein [Nostoc punctiforme PCC
           73102]
          Length = 443

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 169/374 (45%), Positives = 236/374 (63%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+ LGLS +++ AV + GY +PTPIQ + IP VL   D+   AQTGTGKTASF LP+L
Sbjct: 1   MNFSTLGLSNEIIRAVTERGYTEPTPIQRQAIPAVLSGSDLLAGAQTGTGKTASFTLPLL 60

Query: 61  TILEKGR-ARV-----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L   +  +V     R  R LIL PTRELAAQV ++  +YGK   L   ++ GG+    
Sbjct: 61  HRLSSEKNVKVTSNGYRPIRALILTPTRELAAQVEESVREYGKYLQLNSMVMFGGVGINL 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++L+   D+L+ TPGR+LDH  +G L +++IE+LV+DEADRMLDMGFI  I+ I +++
Sbjct: 121 QKQRLKNRVDILVATPGRLLDHVQQGTLNLSHIEVLVLDEADRMLDMGFIHDIRRILAIL 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLF AT +D+++ ++   L NPK IEV   + TAETI            KK  L
Sbjct: 181 PKQRQNLLFFATFSDKIKALAAGLLNNPKMIEVARRNVTAETIAQKIYQV--DRDKKRQL 238

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L++ +D     ++F   K     L   L +      AIHGN  Q  R   L+ FK G
Sbjct: 239 LAHLIR-RDNWYQVLVFTRTKYGADRLVKQLGEDRIQALAIHGNKSQPVRTNALAKFKNG 297

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           ++Q++VA+D+AARGLDI ++ HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ 
Sbjct: 298 SLQVLVATDIAARGLDISELPHVVNFDLPNVPEDYVHRIGRTGRAGASGEAVSLVCVDEY 357

Query: 355 KHIDAIEKLIEKKV 368
             +  IEKLIE+++
Sbjct: 358 SLLTDIEKLIEQRL 371


>gi|157369574|ref|YP_001477563.1| ATP-dependent RNA helicase RhlE [Serratia proteamaculans 568]
 gi|157321338|gb|ABV40435.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
          Length = 456

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 165/371 (44%), Positives = 238/371 (64%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS +++ AV + GY +PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV--RMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L K    V  R P R LIL PTRELAAQ+ +N E Y K   L   ++ GG+    Q  
Sbjct: 61  QLLSKHDHAVKGRRPVRALILTPTRELAAQIGENVESYSKYLRLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQRAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++   L NP  +EV   ++ +E IE      +    +K  LL Q
Sbjct: 181 RQNLLFSATFSDDIKGLANKLLHNPASVEVARRNTASEQIEQSV--HFVDKKRKRELLSQ 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++   D  K  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G I+
Sbjct: 239 MIGEGD-WKQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLL 357

Query: 358 DAIEKLIEKKV 368
             IE+L+++++
Sbjct: 358 RDIERLLKREI 368


>gi|78223770|ref|YP_385517.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15]
 gi|78195025|gb|ABB32792.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15]
          Length = 451

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 168/409 (41%), Positives = 249/409 (60%), Gaps = 25/409 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +  L P+V+  V  AGY  PTPIQ + IP V++  DV G+AQTGTGKTA+F LP+L
Sbjct: 1   MEFKEFNLHPQVMAGVTAAGYTTPTPIQAQAIPTVMEGRDVMGLAQTGTGKTAAFALPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G R RVR    L++ PTRELA Q+ D+F   G+   L    + GG+    Q +KL
Sbjct: 61  HRLAQGERGRVR---ALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVNVNPQIQKL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++  PGR+LDH  +G + ++++E+LV+DEAD+M DMGF+P ++ I   +P  RQ
Sbjct: 118 KAGAEIVVACPGRLLDHMAQGTIDLSHLEVLVLDEADQMFDMGFLPDLRRILKQLPPKRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  +++ +++  L++P  ++V T  + A T+ H       +   K  LL +LL
Sbjct: 178 TLLFSATMPIDIRVLAQEILRDPVTVQVGT-VAPAVTVTHALYPV--EQHLKTPLLLELL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  DT ++ +IF   K     L   +EK G+   ++ GN+ Q  R   L  F++GT Q++
Sbjct: 235 RHTDT-ESVLIFTRTKHRAKRLGEQMEKAGYKAASLQGNLSQNRRQAALDGFRDGTFQIL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV N+D+P+ AE YIHRIGRTGRA R G AFT+V  ED   +  
Sbjct: 294 VATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTMVTSEDTAMVRT 353

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           IE+               LN  LE+  +A  ++   + P P+K T F R
Sbjct: 354 IER--------------KLNTSLERRTMAGFDY---SVPAPKKDTEFAR 385


>gi|76811549|ref|YP_332327.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
 gi|126454229|ref|YP_001065030.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1106a]
 gi|242316165|ref|ZP_04815181.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1106b]
 gi|254196606|ref|ZP_04903030.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           S13]
 gi|254260651|ref|ZP_04951705.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1710a]
 gi|76581002|gb|ABA50477.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
 gi|126227871|gb|ABN91411.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1106a]
 gi|169653349|gb|EDS86042.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           S13]
 gi|242139404|gb|EES25806.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1106b]
 gi|254219340|gb|EET08724.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1710a]
          Length = 485

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 164/372 (44%), Positives = 236/372 (63%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L     + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            +K  LL 
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|53718338|ref|YP_107324.1| putative ATP-dependent RNA helicase 1 [Burkholderia pseudomallei
           K96243]
 gi|53724700|ref|YP_102079.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
 gi|67641488|ref|ZP_00440266.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei GB8 horse 4]
 gi|126450332|ref|YP_001081986.1| putative ATP-dependent RNA helicase rhlE [Burkholderia mallei NCTC
           10247]
 gi|134279667|ref|ZP_01766379.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           305]
 gi|226196769|ref|ZP_03792349.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           Pakistan 9]
 gi|52208752|emb|CAH34688.1| putative ATP-dependent RNA helicase 1 [Burkholderia pseudomallei
           K96243]
 gi|52428123|gb|AAU48716.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
 gi|126243202|gb|ABO06295.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10247]
 gi|134248867|gb|EBA48949.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           305]
 gi|225931300|gb|EEH27307.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           Pakistan 9]
 gi|238522432|gb|EEP85876.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei GB8 horse 4]
          Length = 485

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 164/372 (44%), Positives = 236/372 (63%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L     + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            +K  LL 
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|264679797|ref|YP_003279706.1| hypothetical protein CtCNB1_3664 [Comamonas testosteroni CNB-2]
 gi|262210312|gb|ACY34410.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 453

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 162/355 (45%), Positives = 228/355 (64%), Gaps = 8/355 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK----GRARVRMP-R 74
           GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L  L +      +  R P R
Sbjct: 2   GYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRHENASASPARHPVR 61

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTRELA QVA     Y K+  L   ++ GG+  + Q  +L++G +VL+ TPGR+L
Sbjct: 62  ALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKPQTIELKKGVEVLVATPGRLL 121

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           DH     +++N +E +V+DEADRMLD+GF+P +Q I S +P +R TLLFSAT + E++++
Sbjct: 122 DHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKSRTTLLFSATFSPEIKRL 181

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           + ++LQ+P  IEV  P+ TA T+E  F        K+ A ++ +L+ +D ++   IF N 
Sbjct: 182 AGSYLQDPVTIEVARPNETASTVEQRFYKV-TDDDKRYA-IRSVLKERD-IRQAFIFSNS 238

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K     L  +LE+ G    A+HG+  Q  R+K L  FK G + L+V +D+AARGLDI DV
Sbjct: 239 KLGCARLTRALERDGLRAAALHGDKSQDERLKALEAFKAGEVDLLVCTDVAARGLDIKDV 298

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
             VFN+DVP  AE+Y+HRIGRTGRAG  G A TLV   D +++  IEKL +KK++
Sbjct: 299 PAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTDHDSRNVADIEKLTKKKIE 353


>gi|241662052|ref|YP_002980412.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12D]
 gi|240864079|gb|ACS61740.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
          Length = 565

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 163/376 (43%), Positives = 240/376 (63%), Gaps = 11/376 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY +PTPIQ + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMP-------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
             L   +  +V+ P       R L+L PTRELAAQV ++   YGK   L   ++ GG+  
Sbjct: 61  HRLSASQPNKVQTPQGMRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q   L+RG D+++ TPGR+LDH  +  + +++IE+LV+DEADRMLDMGFI  I+ I +
Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           ++P  RQ LLFSAT +D+++++++  L  P  IEV   ++TAET+E           +K 
Sbjct: 181 ILPPKRQNLLFSATFSDDIRELADRLLDKPALIEVARRNTTAETVEQRIYPV--DRERKR 238

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL +L++  D     ++F   K     L   L + G    AIHGN  Q +R + L+ FK
Sbjct: 239 ELLAKLVRDND-WHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALTEFK 297

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT++++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  +
Sbjct: 298 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 357

Query: 353 DIKHIDAIEKLIEKKV 368
           +   +  IE+LI++++
Sbjct: 358 EHGLLRDIERLIKREL 373


>gi|294012034|ref|YP_003545494.1| putative helicase [Sphingobium japonicum UT26S]
 gi|292675364|dbj|BAI96882.1| putative helicase [Sphingobium japonicum UT26S]
          Length = 461

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 160/377 (42%), Positives = 230/377 (61%), Gaps = 13/377 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL+  ++ A+    Y  PTPIQ + IP++L+  D+CGIAQTGTGKTA+F LP L
Sbjct: 1   MQFTDLGLAEPILKALAAKKYASPTPIQAQAIPVLLKGKDLCGIAQTGTGKTAAFALPSL 60

Query: 61  TILEKGRARVRMP------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                  AR   P      R L+L PTRELAAQ+A +F  YG+   L+V ++ GG+P   
Sbjct: 61  DHF----ARNPKPTPLQGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVEVVFGGVPINR 116

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L RG D+++ TPGR+LD  ++    + + EI V+DEAD+M+DMGFI  ++ I  L+
Sbjct: 117 QIRALGRGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLL 176

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ L FSATM  E++ ++  FL +P ++ V   S+TAE +     AT+    +K AL
Sbjct: 177 PKERQNLFFSATMPGEIEALASQFLHDPVKVSVAPQSTTAERVRQQ--ATFVNQMEKQAL 234

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L   ++S+D +   +IF   K     +   LE  G    AIHGN  Q  R   L  F+ G
Sbjct: 235 LNLTIRSED-IDRALIFTRTKHGADRVVRFLEGAGIQAVAIHGNKSQAQRTTALQAFRHG 293

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            ++L+VA+D+AARG+D+  V HV NF++PN  E Y+HRIGRT RAG  G A + VA ++ 
Sbjct: 294 HVKLLVATDIAARGIDVSGVSHVINFELPNVPEQYVHRIGRTARAGAEGVAISFVADDER 353

Query: 355 KHIDAIEKLIEKKVDWL 371
            ++ AIE+  + K+D +
Sbjct: 354 PYLKAIERTTKVKLDVV 370


>gi|237810939|ref|YP_002895390.1| ATP-dependent RNA helicase RhlE [Burkholderia pseudomallei MSHR346]
 gi|237503374|gb|ACQ95692.1| ATP-dependent RNA helicase RhlE [Burkholderia pseudomallei MSHR346]
          Length = 488

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 164/372 (44%), Positives = 236/372 (63%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L     + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            +K  LL 
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|163750030|ref|ZP_02157274.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161330304|gb|EDQ01285.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 436

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 164/392 (41%), Positives = 240/392 (61%), Gaps = 24/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P+++  +   GY +PTPIQ + IP +L   D+   AQTG+GKTA+F LP+L  
Sbjct: 13  FSSLSLRPELLQVLTALGYSQPTPIQTQAIPAILAGQDIMAGAQTGSGKTAAFSLPILHK 72

Query: 63  LEKGRAR-------------------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV 103
           L +   R                   +R  R L+L PTRELA QV  +F KY K   L  
Sbjct: 73  LTEPLLRLDEKNQQESEAPSCSQVPAIRAIRALVLTPTRELALQVHGSFVKYAKLTQLKS 132

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163
           AL+ GG+  +AQ + L  G D+L+ TPGR+LDH  RG + ++ +E LV DEADRMLDMGF
Sbjct: 133 ALVYGGVSIDAQAQILAAGVDILVATPGRLLDHLRRGSMSLSELEFLVFDEADRMLDMGF 192

Query: 164 IPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
              I  I   +P TRQTLLFSAT  + L  +S++ L++PKRIEV   ++ A  IE    A
Sbjct: 193 KDEIDAIVKQLPKTRQTLLFSATFDESLYGLSQSLLRDPKRIEVGERNAAAVEIEQRVYA 252

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
                 +K AL+  L++S   ++  +IF  +K     L  +L K G    A HG++ Q +
Sbjct: 253 V--DSDRKLALITHLIES-GKLQQVLIFSRKKVAADKLAANLTKAGIGAQAFHGDLSQGA 309

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R K+L +FK+G ++++VA+D+AARG+DI D+ +V N+++P +AE+Y+HRIGRTGRAG  G
Sbjct: 310 REKVLQSFKDGEVRVLVATDVAARGIDIIDLNYVVNYELPYKAEDYVHRIGRTGRAGNKG 369

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKV--DWLNG 373
            A TL+ +ED   ++ +E +++K++   WL G
Sbjct: 370 VAITLLCREDEHLLEEVEVVLDKRLPQQWLAG 401


>gi|253699589|ref|YP_003020778.1| DEAD/DEAH box helicase [Geobacter sp. M21]
 gi|251774439|gb|ACT17020.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
          Length = 453

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 156/370 (42%), Positives = 232/370 (62%), Gaps = 8/370 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF    L PKV   +   GYV PTPIQ++ IP V+   DV G+AQTGTGKTA+F LPML
Sbjct: 1   MDFKQFNLHPKVQAGIEAMGYVTPTPIQLQAIPSVVSGQDVLGLAQTGTGKTAAFGLPML 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++++ R  VR    L+L PTRELA Q+ +     GK   L    + GG+    Q KKL
Sbjct: 61  HRLVQEERGHVR---GLVLAPTRELAEQINEALNGMGKQTRLRSITVYGGVNINTQIKKL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++  PGR+LDH ++G + ++ +EILV+DEAD+M DMGF+P ++ I   +P  RQ
Sbjct: 118 KEGAEIVVACPGRLLDHISQGTIDLSKVEILVLDEADQMFDMGFLPDVRKILRALPGKRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM D++++++   L+NP  ++V+  ++ A T+ H           K  LL ++L
Sbjct: 178 NLMFSATMPDDIRRLAHEILRNPVTVQVSR-TAPAATVSHALYPVGQHL--KTPLLFEML 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  DT ++ +IF   K     +   LEK G+   ++ GN+ Q  R   L  F++GT Q+M
Sbjct: 235 KHTDT-ESVLIFTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIM 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HV N+D+P+  E Y HRIGRTGRA + G AFT+V  ED   + A
Sbjct: 294 VATDIAARGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTSEDDYTVRA 353

Query: 360 IEKLIEKKVD 369
           IEK++  K++
Sbjct: 354 IEKVLGTKIE 363


>gi|37676599|ref|NP_936995.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|37201142|dbj|BAC96965.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 445

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 161/382 (42%), Positives = 238/382 (62%), Gaps = 7/382 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA  G +P+VV A+ + GY K TPIQ K IP+  + HD+   AQTGTGKTA+F LP++
Sbjct: 19  MSFASQGFAPEVVKALEECGYEKLTPIQQKAIPVARRGHDIFATAQTGTGKTAAFSLPLI 78

Query: 61  T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +LE G++  R   R LI  PTRELA Q+ADN + Y K  NL+VA + GG    +Q + 
Sbjct: 79  QQLLESGKSASRKTARALIFAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQERM 138

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H   G + + NIE LV DEADR+LDMGFI  ++ I   V    
Sbjct: 139 LENGVDILVATPGRLEEHIESGNVSVANIEFLVFDEADRILDMGFINAVRKIMLDVETNP 198

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L ++S++ L+ PKRI V   ++TA T+ H          +K  LL +L
Sbjct: 199 QIMMFSATTSSQLNELSKDILRKPKRIAVERENTTAHTVAHVLYPV--DQERKTELLSEL 256

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F N K+   ++   L+  G      HG+  Q +R + L  FKEG +++
Sbjct: 257 I-GRKNWQQVLVFVNYKETANDIVKELKLDGIKANVCHGDKAQSARRRALEEFKEGKVRV 315

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V +E+   + 
Sbjct: 316 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVV 375

Query: 359 AIEKLIEKKVDWLNGDLSSLNP 380
            +E LI++++  +  +L+   P
Sbjct: 376 QVENLIQQRIRRI--ELAGYEP 395


>gi|257092638|ref|YP_003166279.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045162|gb|ACV34350.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 481

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 165/376 (43%), Positives = 234/376 (62%), Gaps = 13/376 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLS ++  AV D GY +PTP+Q + IP++L   DV   AQTGTGKTA F LP+L 
Sbjct: 4   SFALLGLSAELTRAVDDQGYSEPTPVQAQAIPVILAGRDVLAGAQTGTGKTAGFTLPLLQ 63

Query: 62  ILEKGRARVRMP------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            L    A   +P      R LIL PTRELAAQ+ ++   YGK   L   L+ GG+    Q
Sbjct: 64  RLATRAAPAGVPGQRSPVRALILTPTRELAAQIEESVRTYGKYLPLKSTLIYGGVNINPQ 123

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG D+L+ TPGR+LDH  +  + +  +EILV+DEADRMLDMGFI  I+ I +L+P
Sbjct: 124 IDALRRGVDILVATPGRLLDHLQQKTVSLAQVEILVLDEADRMLDMGFIRDIRRILALLP 183

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCA 233
             RQ LLFSAT ++E++K+++  L  P  +EV   ++ +E +      V ++    +K  
Sbjct: 184 AKRQNLLFSATFSNEIRKLADGLLHAPAMVEVARRNAESELVAQRVHPVDSW----RKRE 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ S D  +  ++F   K     L   L K G    AIHGN  Q +R + L+ FK 
Sbjct: 240 LLTHLVASGD-WRQVLVFTRMKSGANRLAEQLCKVGIEATAIHGNKSQPARTRALAGFKA 298

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           GT++++VA+D+AARGLDI ++ HV NF++P+  E+Y+HRIGRTGRAG  G+A +LV+ E+
Sbjct: 299 GTVRVLVATDIAARGLDIEELPHVVNFELPHVPEDYVHRIGRTGRAGSTGEAISLVSPEE 358

Query: 354 IKHIDAIEKLIEKKVD 369
              +  IEKL+ +++D
Sbjct: 359 RPLLADIEKLLTRRID 374


>gi|310814605|ref|YP_003962569.1| DEAD/DEAH box helicase domain protein [Ketogulonicigenium vulgare
           Y25]
 gi|308753340|gb|ADO41269.1| DEAD/DEAH box helicase domain protein [Ketogulonicigenium vulgare
           Y25]
          Length = 426

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 162/378 (42%), Positives = 246/378 (65%), Gaps = 11/378 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  LGLSP++  A+ + G  +PTPIQ + IP  +   DV G+AQTGTGKTA+F LPM+
Sbjct: 1   MDFDMLGLSPRLTKALAELGITEPTPIQAQAIPHAMNGRDVLGLAQTGTGKTAAFGLPMI 60

Query: 61  TILEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L K   RA+ +  R L+L PTRELA Q+A+N   Y K+ +L   ++ GG     Q ++
Sbjct: 61  DALIKDSRRAQAKGARALVLAPTRELAKQIAENLAAYTKDSHLKTVVVTGGAGIGGQIQR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +ERG  +L+ TPGR++D  +R  + ++  E LV+DEAD+MLD+GFI  ++ I  L+P  R
Sbjct: 121 MERGTAILVATPGRLIDLLDRKAIDLSQTEFLVLDEADQMLDLGFIHALRRIAPLLPANR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCALLQ 236
           QT+LFSATM  ++++++ +FL NP R++VN P   A  I     FVA+ A    K  LL 
Sbjct: 181 QTMLFSATMPKQMEELAASFLSNPIRVQVNPPGQAATKITQSVHFVASRA----KTDLLI 236

Query: 237 QLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +LL + +D +   ++F   K  +  L   LE  G++V AIHGN  Q  R + L +F+ GT
Sbjct: 237 ELLDAHRDEL--ALVFGRTKHGMEKLAKQLENAGYAVAAIHGNKSQGQRDRALRDFRAGT 294

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGLDIPDV +V+N+++PN  +NY+HRIGRT RAG+ G+A    A +++ 
Sbjct: 295 LRVLVATDVAARGLDIPDVRYVYNYELPNVPDNYVHRIGRTARAGKDGQAVAFCAPDEMG 354

Query: 356 HIDAIEKLIEKKVDWLNG 373
            +  I+K+++  +   +G
Sbjct: 355 DLRDIQKVMKTTIPVASG 372


>gi|298490698|ref|YP_003720875.1| DEAD/DEAH box helicase domain-containing protein ['Nostoc azollae'
           0708]
 gi|298232616|gb|ADI63752.1| DEAD/DEAH box helicase domain protein ['Nostoc azollae' 0708]
          Length = 492

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 167/374 (44%), Positives = 233/374 (62%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L LSP+++ AV + GY KPTPIQ++ IP VL   D+   AQTGTGKTASF LP+L
Sbjct: 1   MSFSNLALSPEIIRAVTERGYTKPTPIQMQAIPAVLSGGDLLAGAQTGTGKTASFTLPLL 60

Query: 61  TILE-----KGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L      K  +   +P R LIL PTRELAAQV ++   YGK   L    + GG+    
Sbjct: 61  HQLSSNKNVKSNSTGWVPIRALILTPTRELAAQVEESVHDYGKYLKLKSMAMFGGVSINP 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L+ G D+++ TPGR+LDH  +G + ++ IE+LV+DEADRMLDMGFI  I+ I S++
Sbjct: 121 QKRLLKSGVDIVVSTPGRLLDHVEQGTVNLSRIEVLVLDEADRMLDMGFIRDIRRIMSIL 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLF AT +D++++++   L  P  IEV   + TA+TI     A      KK  L
Sbjct: 181 PKKRQNLLFFATFSDKIKELAAGLLNRPTMIEVARRNVTADTIAQR--AYQVDRDKKPQL 238

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L++ QD     ++F   K     L   L        AIHGN  Q +R   L+ FK G
Sbjct: 239 LAHLIK-QDDWYQVLVFTRTKYGADRLVKQLNDDRIQALAIHGNKSQGARTHALAKFKNG 297

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           ++Q++VA+D+AARGLDI ++ HV N+D+P   E+Y+HRIGRTGRAG  G+A +LV  ++ 
Sbjct: 298 SLQVLVATDIAARGLDISELPHVVNYDLPYVPEDYVHRIGRTGRAGARGEAISLVCVDEY 357

Query: 355 KHIDAIEKLIEKKV 368
             +  IEKLI++K+
Sbjct: 358 HLLADIEKLIQQKL 371


>gi|153207356|ref|ZP_01946093.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161830442|ref|YP_001596593.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
           331]
 gi|165918485|ref|ZP_02218571.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
           334]
 gi|120576665|gb|EAX33289.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161762309|gb|ABX77951.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
           331]
 gi|165917853|gb|EDR36457.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
           334]
          Length = 411

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 172/407 (42%), Positives = 251/407 (61%), Gaps = 13/407 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS +++ A+ + GYV+PTP+Q + IP++LQ  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA---RVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L   R    R   P  R LIL PTRELA QV +    YGK   L   ++ GG+  + Q
Sbjct: 61  QRLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG D+L+ TPGR+LD  N+G L ++ +E  V+DEADRMLDMGF+P I+ I  L+P
Sbjct: 121 INHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +RQ LLFSAT + E++++++  L +P  IEV   ++ A  I H  V       +K  LL
Sbjct: 181 ESRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITH--VVHPVDRQRKRELL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             ++ S++  +  ++F   K     L   LE  G S  AIHGN  Q +RM+ L+ FK+G 
Sbjct: 239 SFMIGSKN-WRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGK 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+AARGLDI  + HV NF++P+ A++Y+HR+GRTGRA   G A +LV+ ++++
Sbjct: 298 IRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVR 357

Query: 356 HIDAIEKLIEKKV--DWLNGDLSS---LNPPLEKIDIAQHNHARKNN 397
            +  IEKL++ K+  + + G   S      P++ +  A+ N   KNN
Sbjct: 358 LLRDIEKLLQSKMPQEVIPGYEPSPFTKAAPVQAVRRARSNQRGKNN 404


>gi|317401375|gb|EFV82010.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
          Length = 591

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 159/377 (42%), Positives = 233/377 (61%), Gaps = 18/377 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+P ++ A+ DAG+  PT +Q   IP  L  HD+   +QTG+GKTA+F+LP L
Sbjct: 1   MSFENLGLAPALLSALQDAGFTTPTTVQASAIPQALAGHDLMVSSQTGSGKTAAFMLPAL 60

Query: 61  TILEKGRARVRMP-------RTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPF 112
             +       +MP       + L+L PTRELA QV D    YG+   +L  A ++GG+P+
Sbjct: 61  HRI------AQMPANKGVGVQVLVLAPTRELALQVTDATATYGRKLADLRTATVVGGMPY 114

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
            AQ K L R  DVL+ TPGR++DH N G++ +N +  LV+DEADRMLDMGFI  I+ I S
Sbjct: 115 GAQLKALSRRVDVLVATPGRLIDHLNSGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIS 174

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKK 231
            +P  RQTLLFSAT+   + K++   +++P+RIEV         I    +  YA   S K
Sbjct: 175 RLPVERQTLLFSATLDGTVAKLAARMMRDPQRIEVAGAKEKHTNITQSLL--YADDASHK 232

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL  +L+   ++   I+F + K+   +L   L  QGF+  A+HG+++QR R + LS  
Sbjct: 233 MQLLDHVLRDA-SLDQAIVFTSTKRGADDLADHLADQGFAAAALHGDMNQRQRTRTLSQL 291

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G ++++VA+D+AARG+D+  + H  NFD+P +AE+Y+HRIGRTGRAGR+G AFTL   
Sbjct: 292 QRGQLRILVATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRTGRAGRNGLAFTLATH 351

Query: 352 EDIKHIDAIEKLIEKKV 368
            +   +  IE  I + +
Sbjct: 352 SERHKVRRIEHYIGQSI 368


>gi|126440586|ref|YP_001057787.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           668]
 gi|126220079|gb|ABN83585.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           668]
          Length = 485

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 164/372 (44%), Positives = 236/372 (63%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L     + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            +K  LL 
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|167644899|ref|YP_001682562.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter sp.
           K31]
 gi|167347329|gb|ABZ70064.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
          Length = 479

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 156/368 (42%), Positives = 230/368 (62%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL+  ++ A+ D GY  PTPIQ + IPLV+   D+ GIAQTGTGKTA+F LP+L  
Sbjct: 4   FTDLGLAKPLLKALTDKGYTVPTPIQAQAIPLVMSGRDLLGIAQTGTGKTAAFALPILHR 63

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L  +K  A  R  R L+L PTRELA Q+A++F  YGK+  LTVA + GG+ +  Q K L 
Sbjct: 64  LAEDKKPAPRRGFRCLVLSPTRELATQIAESFRDYGKHMGLTVATIFGGVKYGPQMKALA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR++DH       +N +EI V+DEAD+MLD+GF+  I+ I S +P  RQ 
Sbjct: 124 AGVDVVVATPGRLMDHLGEKSAHLNGVEIFVLDEADQMLDLGFVVPIRKIASQLPKERQN 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+ K++   L+NP ++ +   ++T E I+   +   AQ  +K  LL +LL 
Sbjct: 184 LFFSATMPSEIGKLAGELLKNPAQVAITPSATTVERIDQSLIFIEAQ--RKRPLLAELLA 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            + +++  I+F   K+    +   L   G    AIHG+  Q  R + L+ FK G ++ ++
Sbjct: 242 DK-SVERSIVFTRTKRGADRVAKYLVASGIEAAAIHGDKTQGQRERALAAFKAGQVKALI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV HVFN+++PN  E+Y+HRIGRT R G+ G A +  A ++   +  I
Sbjct: 301 ATDIAARGIDVNDVSHVFNYELPNVPESYVHRIGRTARKGKEGIAISFCADDERNLLKDI 360

Query: 361 EKLIEKKV 368
           +K   + +
Sbjct: 361 QKATRQTI 368


>gi|309779776|ref|ZP_07674531.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
 gi|308921353|gb|EFP66995.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
          Length = 404

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 163/376 (43%), Positives = 240/376 (63%), Gaps = 11/376 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY +PTPIQ + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 12  MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILRGGDLLAGAQTGTGKTAGFTLPLL 71

Query: 61  TILEKGRA-RVRMP-------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
             L   +  +V+ P       R L+L PTRELAAQV ++   YGK   L   ++ GG+  
Sbjct: 72  HRLSAAQPNKVQTPQGMRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 131

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q   L+RG D+++ TPGR+LDH  +  + +++IE+LV+DEADRMLDMGFI  I+ I +
Sbjct: 132 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 191

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           ++P  RQ LLFSAT +D+++++++  L  P  IEV   ++TAET+E           +K 
Sbjct: 192 ILPAKRQNLLFSATFSDDIRELADRLLDKPALIEVARRNTTAETVEQRIYPV--DRERKR 249

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL +L++  D     ++F   K     L   L + G    AIHGN  Q +R + L+ FK
Sbjct: 250 ELLAKLVRDND-WHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALTEFK 308

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT++++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  +
Sbjct: 309 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 368

Query: 353 DIKHIDAIEKLIEKKV 368
           +   +  IE+LI++++
Sbjct: 369 EHGLLRDIERLIKREL 384


>gi|291616785|ref|YP_003519527.1| RhlE [Pantoea ananatis LMG 20103]
 gi|291151815|gb|ADD76399.1| RhlE [Pantoea ananatis LMG 20103]
          Length = 449

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 162/374 (43%), Positives = 237/374 (63%), Gaps = 6/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLSGRDLLASAQTGTGKTAGFTLPLL 60

Query: 61  TILEK--GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L    G  R R P R LIL PTRELAAQV +N  +Y K   L   ++ GG+    Q  
Sbjct: 61  QKLSANTGAVRGRRPVRALILTPTRELAAQVGENVVEYSKYLPLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ +E+LV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLVHQNAVDLSQVEVLVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++E  L NP+++EV   ++ +E +       +    +K  LL Q
Sbjct: 181 RQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTASEQVSQQV--HFVDKKRKRELLSQ 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK G I+
Sbjct: 239 LI-GEGNWQQVLVFTRTKHGANHLAEQLGKDGITAAAIHGNKSQGARTRALADFKSGAIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN AE+Y+HRIGRTGRA   G A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGVALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL 371
             IE+L+++++  L
Sbjct: 358 RDIERLLKREIPRL 371


>gi|330828434|ref|YP_004391386.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565]
 gi|328803570|gb|AEB48769.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii
           B565]
          Length = 416

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 168/402 (41%), Positives = 243/402 (60%), Gaps = 11/402 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA+L LSP++   + + GY  PTPIQ + IP++L   D+   AQTGTGKTA+FVLP+L  
Sbjct: 6   FAELALSPRLQQTLTELGYAAPTPIQARAIPVILAGRDLMAGAQTGTGKTAAFVLPLLEQ 65

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L + +   + P R L+L PTRELA QVA++  +YG+   LT   + GG+   AQ   L+
Sbjct: 66  LLAQPQMESQRPIRALVLVPTRELAVQVAESVARYGQGTGLTSTQVYGGVSIAAQVDALK 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+LI TPGR+LDH  +G L ++++  LV DEADRMLDMGF+  I  +   +P  RQT
Sbjct: 126 NGVDLLIATPGRLLDHLRQGALSLDSLRHLVFDEADRMLDMGFMDEITALLKQLPVDRQT 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D L  +S+  L++P+ IEV   ++TA  +E           +K AL++ +L+
Sbjct: 186 LLFSATCDDNLFALSKVLLRDPELIEVAPRNTTAAEVEQRVYTV--DSDRKLALVEHMLK 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      +IF   ++    L   L K G +  A HG++ Q +R K+L  F+ GT+Q +V
Sbjct: 244 VKG-WAPALIFSRTRQGADKLAQQLGKSGINALAFHGDLSQSAREKVLLEFRAGTLQALV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+ +V N + P  AE+Y+HRIGRTGRAG  G A TL + ED   ++ +
Sbjct: 303 ATDVAARGLDITDLNYVINLEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDTPLLEKV 362

Query: 361 EKLIEKKV--DWLNG---DLSSLNP-PLEKIDIAQHNHARKN 396
           E +++ ++   W  G   DL+   P P      AQ   ARK 
Sbjct: 363 EAVLDTRLPQQWFPGFEPDLTRFEPEPRRNSKAAQKQRARKQ 404


>gi|319788058|ref|YP_004147533.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466570|gb|ADV28302.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 463

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 163/385 (42%), Positives = 238/385 (61%), Gaps = 10/385 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PTPIQ + IPL L  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTPIQQQAIPLALAGHDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L     +V    R PR L+L PTRELA QV D+   Y K   +  A++ GG+    Q 
Sbjct: 61  QYLGTEPQKVGPGPRKPRALVLTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L RG D++I  PGR++DH  R  + ++ IE+L++DEADRMLDMGF+P I+ I + +P 
Sbjct: 121 DSLRRGVDMVIACPGRLIDHIERRSIDLSGIEVLILDEADRMLDMGFLPSIKRILAKLPK 180

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT  + +++++  F++NP+ ++V   ++ AETI H         ++K  LL
Sbjct: 181 QNRQTLLFSATFPESIKQLAMEFMRNPREVQVTPQNTVAETIAHRVHPV--DTARKRELL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL  QD     ++F   K     L   LEK G    AIHGN  Q  R++ L +FK G 
Sbjct: 239 LHLL-GQDARVQTLVFAKTKHGSDKLATHLEKAGIQAAAIHGNKSQGQRLRALGDFKSGK 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G +G+A +LV++ED K
Sbjct: 298 VKVLVATDIAARGIDIDQLPRVINYDLPMVAEDYVHRIGRTGRNGANGEALSLVSQEDAK 357

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNP 380
           ++  I +++ + ++    DL    P
Sbjct: 358 YLRQIVRMLGRDMEIR--DLPGFEP 380


>gi|40063513|gb|AAR38313.1| ATP-dependent RNA helicase RhlE [uncultured marine bacterium 581]
          Length = 446

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 159/366 (43%), Positives = 233/366 (63%), Gaps = 4/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ AV D GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSTLGLSESLLKAVADEGYTTPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L KG+ A+    R L+L PTRELAAQVA++ + YGK  NL  A++ GG+    Q  +L
Sbjct: 61  HGLSKGQSAKANQVRALVLTPTRELAAQVAESVDIYGKYLNLRSAVVFGGVKINPQMMRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+LI TPGR+LD + +  +    +E+L++DEADRMLDMGFI  I+ I   +P  RQ
Sbjct: 121 RKGVDILIATPGRLLDLYQQNAMSFQKLEVLILDEADRMLDMGFIHDIRRIMKALPNKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +++++ +++  + NP  I V   +STA ++           ++K  LL +L+
Sbjct: 181 NLMFSATFSEDIRDLAKTIVNNPVEISVTPRNSTAVSVTQWIHPV--DKNQKRHLLVELI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q   +  ++F   K+    L   LEK+     AIHGN  Q +R + LS FK G ++++
Sbjct: 239 -NQHNWEQVLVFSRTKRGANRLAEFLEKKDIQAAAIHGNKSQGARTRALSEFKSGKLRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N D+P  A++Y+HRIGRTGRAG  G+A +LV+ ++ + +  
Sbjct: 298 VATDIAARGLDIEQLPQVVNLDLPEVAQDYVHRIGRTGRAGATGQAISLVSADEAQLLQD 357

Query: 360 IEKLIE 365
           IE+LI+
Sbjct: 358 IERLIQ 363


>gi|189425609|ref|YP_001952786.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
 gi|189421868|gb|ACD96266.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 430

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 152/368 (41%), Positives = 226/368 (61%), Gaps = 2/368 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+L L   +  A+   GY  PTPIQ + IP  L   D+   AQTGTGKTA+F++P L
Sbjct: 1   MSFAELNLHASIQKAISVCGYATPTPIQAEAIPQALSGRDLIASAQTGTGKTAAFIIPAL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K       PR L+L PTRELAAQVAD+  +YG+   +    ++GG+P+  Q + L 
Sbjct: 61  ERLAKPGPAGIGPRVLVLTPTRELAAQVADSVARYGRFLRMRYGSIVGGMPYPDQVRLLR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR++DH  RG++ ++ +E+LV+DEADRMLDMGF   +  I +  P  RQT
Sbjct: 121 QPVDLIVATPGRLIDHLERGRIDLSRVELLVLDEADRMLDMGFTDAVDQIAAATPKKRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLF+ATM D + +++   L++P RI +++P    ++IE     T      K  +L  LL+
Sbjct: 181 LLFTATMDDPMARLAGRLLKDPSRIAISSPKENHDSIEQRMHLT-DNLGHKHKMLHHLLE 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   IIF   K++   L   L  +G S  A+HG++ Q +R + L+N + G ++ +V
Sbjct: 240 DP-TITQAIIFSATKRDADTLARDLYDRGLSAAALHGDMTQGARTRTLTNLRRGKVRFLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + HV NFD+P  AE+Y+HRIGRTGRAG  G A + V+  D  ++  I
Sbjct: 299 ATDVAARGLDINGISHVINFDLPRAAEDYVHRIGRTGRAGATGVAISFVSPADAVYLQRI 358

Query: 361 EKLIEKKV 368
           ++   + V
Sbjct: 359 QRYTGQTV 366


>gi|167903972|ref|ZP_02491177.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           NCTC 13177]
          Length = 430

 Score =  310 bits (794), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 164/372 (44%), Positives = 236/372 (63%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L     + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            +K  LL 
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|295106692|emb|CBL04235.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 530

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 160/382 (41%), Positives = 234/382 (61%), Gaps = 3/382 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS   + AV   GY  PTP+Q + IPLVL+  D+   A TGTGKTA+F+LP+L+ 
Sbjct: 4   FADLGLSKDALAAVEKLGYENPTPVQEQAIPLVLEGRDLIAAASTGTGKTAAFLLPILST 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L + + R R PR L++ PTRELA Q+A    +  +        + GG P+  Q K+L  G
Sbjct: 64  LPRVKGRNRAPRVLVVSPTRELAQQIARTCMQISRQTRHFTTTVFGGTPYGPQIKELRGG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+ D   RG + ++++E+LV+DEADRMLDMGF+P +  I    P  RQTLL
Sbjct: 124 TDVLIATPGRLKDLMKRGVVNLSSVEVLVLDEADRMLDMGFLPDVTTIVDATPECRQTLL 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +QK   + L +P  +E+     TA+T+E  F+     ++K   LL+ +L+ +
Sbjct: 184 FSATIDQSIQKNLGSLLNDPAMVEIARNGETAKTVEQ-FMMPIKNFNKP-ELLEAVLREK 241

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K    +   +L   GF   +IH +  Q +R + L NF+ G   ++VA+
Sbjct: 242 GSERI-IVFARTKNRTEDCAEALCDAGFRAESIHSDKSQGARRRALENFRRGKTSILVAT 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ ARG+D+PDV HV NFD+P+  E+Y+HRIGRTGRAG  G A + V +E  + +  IE+
Sbjct: 301 DVLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGRAGEKGYAISFVTRETSRTLRDIER 360

Query: 363 LIEKKVDWLNGDLSSLNPPLEK 384
           LI K + ++  +   L+P L K
Sbjct: 361 LIGKDIPFMELETYELDPTLLK 382


>gi|167718208|ref|ZP_02401444.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           DM98]
          Length = 434

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 164/372 (44%), Positives = 236/372 (63%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L     + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            +K  LL 
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|189346086|ref|YP_001942615.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245]
 gi|189340233|gb|ACD89636.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245]
          Length = 418

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 160/370 (43%), Positives = 234/370 (63%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L +   ++ A+ + GY  PTPIQ + IPL+L  +D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MQFRSLAIIEPILQAIEEEGYQTPTPIQAEAIPLILDGNDLLGCAQTGTGKTAAFAIPVL 60

Query: 61  TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L   K   + R  R+LI+ PTRELA Q+ ++F+ YG++  LT  ++ GG+    Q   
Sbjct: 61  QLLNAVKTNEKKRKIRSLIITPTRELAIQIGESFKAYGRHTGLTSTVIFGGVNQNPQTAS 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G D+LI TPGR+LD  N+G L + NIE  V+DEADRMLDMGFI  I+ I + +P  +
Sbjct: 121 LQKGIDILIATPGRLLDLMNQGHLHLRNIEFFVLDEADRMLDMGFIHDIRKILAELPKKK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+ +++ + L NP  + V   SST E I       +     K  LL  L
Sbjct: 181 QSLFFSATMPPEITRLAASILHNPVEVSVTPVSSTVEIINQQIF--FVDKGNKNNLLVHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L++QD +K  ++F   K     +   L K   +  AIHGN  Q +R + L+NFKE T+++
Sbjct: 239 LKNQD-IKTALVFTRTKHGADKVVKYLLKHDITAAAIHGNKAQNARQRALTNFKEQTMRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ ++ +V NFD+ N AE Y+HRIGRTGRAG  G A +    E+ +++ 
Sbjct: 298 LVATDIAARGIDVDELEYVINFDMSNIAETYVHRIGRTGRAGAKGTAISFCDAEEKEYLR 357

Query: 359 AIEKLIEKKV 368
            +EKLI KK+
Sbjct: 358 DVEKLIAKKI 367


>gi|317402151|gb|EFV82742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
          Length = 481

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 162/371 (43%), Positives = 237/371 (63%), Gaps = 8/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F+D GL P ++ ++ + GY  PTPIQ + IP+V++  DV G AQTGTGKTA+F LP+L  
Sbjct: 20  FSDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHR 79

Query: 61  --TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              +     +  R P R LIL PTRELA QV ++ ++Y K   L  A++ GG+    Q +
Sbjct: 80  LMPLANTSASPARHPVRALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQKE 139

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG +VL+ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF+P ++ I  L+P  
Sbjct: 140 ALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQ 199

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT ++E++K+  ++L +P  IEV   ++TA TI    +A      +K A +  
Sbjct: 200 RQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATANTITQ--IAYKMSGDQKRAAVVH 257

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++S+  +K  I+F N K     L   LE+ G    +IHG+  Q  RMK L  FK G ++
Sbjct: 258 LVKSRG-LKQVIVFSNTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKAGELE 316

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  V  V N+D+P  AE+Y+HRIGRTGRAG  G+A  L   ++ + +
Sbjct: 317 VLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGATGEAIALFTADEERFL 376

Query: 358 DAIEKLIEKKV 368
             IEKLI+++V
Sbjct: 377 LDIEKLIKREV 387


>gi|317132682|ref|YP_004091996.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315470661|gb|ADU27265.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 435

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 158/375 (42%), Positives = 239/375 (63%), Gaps = 6/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L+P ++ A+  AGY +PTPIQ ++IP +L++ D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MQFSQLQLNPSILKALAAAGYEQPTPIQEQSIPYILEKRDLLGTAQTGTGKTAAFAVPIL 60

Query: 61  TIL--EKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L  E G++   R  R L+L PTRELA Q+ ++F++Y +  +L   ++ GG+    Q  
Sbjct: 61  DLLCREHGQSTGSRHIRALVLSPTRELAIQIKESFDQYSRFLHLRNTVIFGGVSQIPQVS 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G D+L+ TPGR+LD  N+  + ++++   V+DEADRMLDMGFI  +  +   +P  
Sbjct: 121 RLREGVDILVATPGRLLDLMNQRHVDLSHVSYFVLDEADRMLDMGFIHDVHKVVEKLPQN 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM  ++ ++++  L+NP ++ V   SSTAET+E      Y     K  LL  
Sbjct: 181 RQTLLFSATMPPDIARLADKLLKNPAQVSVAPVSSTAETVEQKLF--YVDKKNKKHLLVH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL++ D M++ ++F   K     +   LEK G    AIHGN  Q +R + L  FK   I 
Sbjct: 239 LLKTAD-MESVLVFSRTKHGANKIVEHLEKAGIPSKAIHGNKSQSARQQALREFKSRKIH 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HV N+D+PN  E Y+HRIGRTGRAG+ G AF+   +E+  ++
Sbjct: 298 VLVATDIAARGIDVTELSHVINYDLPNEPETYVHRIGRTGRAGQSGMAFSFCDEEEHDYL 357

Query: 358 DAIEKLIEKKVDWLN 372
             IE+LI K +   N
Sbjct: 358 RTIERLIGKHIPVEN 372


>gi|34495838|ref|NP_900053.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
 gi|34101693|gb|AAQ58061.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 472

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 165/375 (44%), Positives = 231/375 (61%), Gaps = 14/375 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL+  ++ AV D GY  PTPIQ + IP VLQ  D+   AQTGTGKTA F LP+L
Sbjct: 4   LTFADLGLADPLLRAVADTGYTTPTPIQAQAIPQVLQGGDLLAAAQTGTGKTAGFTLPLL 63

Query: 61  TIL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L        GR     PR L+L PTRELAAQV ++   Y K   L   ++ GG+    
Sbjct: 64  QLLMCSPSHHAGR-----PRALVLTPTRELAAQVEESVRTYSKYLPLKSLVMFGGVNINP 118

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q K L    D+L+ TPGR+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ + + +
Sbjct: 119 QIKALRAPVDILVATPGRLLDHVGQKTVDLSGVEILVLDEADRMLDMGFIHDIKKVLAKL 178

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT +DE++ +++  L NPK +EV   ++T E +            KK  L
Sbjct: 179 PAQRQNLLFSATFSDEIKALADKLLDNPKLVEVARRNTTNELVSQK--VHLVDRDKKTEL 236

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L++ Q+  +  ++F   K     L   L+K G    AIHGN  Q +R + L++FK G
Sbjct: 237 LIHLIREQNWFQV-LVFTRTKHGANRLAEKLDKIGIPAAAIHGNKSQNARTRALADFKSG 295

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            +Q++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAG  G+A +LV  ++ 
Sbjct: 296 ELQVLVATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGSPGEALSLVCVDEF 355

Query: 355 KHIDAIEKLIEKKVD 369
             +  IEKLI+  ++
Sbjct: 356 SFLRDIEKLIKMSIE 370


>gi|320538877|ref|ZP_08038553.1| putative RNA helicase [Serratia symbiotica str. Tucson]
 gi|320031037|gb|EFW13040.1| putative RNA helicase [Serratia symbiotica str. Tucson]
          Length = 437

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 163/371 (43%), Positives = 238/371 (64%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS +++ AV + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFKTLGLSAEILRAVEEQGYREPTPIQRQAIPMVLAGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGR--ARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L +    A+ R P R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    Q  
Sbjct: 61  QLLSQHEQPAKGRRPVRALILTPTRELAAQIGENVDAYSKYLRLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD   +  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLD-LEQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++   L NP  +EV   ++ +E IE      +    +K  LL Q
Sbjct: 180 RQNLLFSATFSDDIKALANKLLHNPASVEVARRNTASEQIEQSVY--FVDKKRKRELLSQ 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++ + D  K  ++F   K    +L   L K G +  AIHGN  Q +R + L++FKEG I+
Sbjct: 238 MIGAGD-WKQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKEGKIR 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ K +
Sbjct: 297 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLL 356

Query: 358 DAIEKLIEKKV 368
             IE+L+++++
Sbjct: 357 RDIERLLKREI 367


>gi|238893853|ref|YP_002918587.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae NTUH-K2044]
 gi|238546169|dbj|BAH62520.1| putative ATP-dependent RNA helicase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 451

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 165/372 (44%), Positives = 239/372 (64%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ AV + GYV+PTPIQ + IP VLQ  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQV +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QRLIQNEPHAKGRRPVRALILTPTRELAAQVGENVCDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDIRRVLAKLPAR 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +DE++ ++E  L NP  +EV   ++ +E I +H     +   ++K  LL 
Sbjct: 181 RQNLLFSATFSDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVH---FVDKNRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           QL+  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 QLI-GEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IE+L++K++
Sbjct: 357 LRDIERLLKKEI 368


>gi|300779365|ref|ZP_07089223.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
 gi|300504875|gb|EFK36015.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
          Length = 434

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 173/437 (39%), Positives = 256/437 (58%), Gaps = 23/437 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F DL L   +  A+ + GY  PTPIQ ++IP +L   D  G AQTGTGKTA+F +P+L
Sbjct: 1   MNFTDLNLIEPIAKAIQEQGYTTPTPIQERSIPDILDGRDFLGCAQTGTGKTAAFSIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K +   +  + LIL PTRELA Q+ +N   YGK   L   ++ GG+    Q   L+
Sbjct: 61  QNLSKNKIPNKHIKALILTPTRELAIQIEENINAYGKYLPLKQLVIFGGVKQGNQEAALK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+LD   +G + + N+EI V+DEADRMLDMGF+  ++ +  L+P  RQT
Sbjct: 121 KGVDILVATPGRLLDFIAQGIISLKNLEIFVLDEADRMLDMGFVHDVKRVIKLLPQRRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+QK++ + L NP ++EV   SSTA+TI+      + +   K  LL  +L+
Sbjct: 181 LFFSATMPGEIQKLANSILNNPVKVEVTPVSSTADTIKQSVY--FVEKDNKLNLLSHILK 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D   + ++F   K     +   L+K   S  AIHGN  Q +R   L+NFK G  +++V
Sbjct: 239 N-DISDSVLVFARTKHGADKISRKLQKDNISAEAIHGNKSQNARQNALNNFKSGKTRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++  V NF++ + +E Y+HRIGRTGRAG  G + + V   D+ ++   
Sbjct: 298 ATDIAARGIDIDELKFVINFELSDVSETYVHRIGRTGRAGAEGTSISFVDGLDLLNLKNT 357

Query: 361 EKLIEKKV-----------DWLNGDLSSLNPPL----EKIDIAQHNHAR----KNNPIPQ 401
           EKLI KK+           D +     S N P+    EK   + +N++R    +  P P 
Sbjct: 358 EKLIGKKIPVVKDHPFHTDDLVAQKRDSNNKPVPAGGEKPKASNNNNSRSGKNRKKPSPT 417

Query: 402 KSTGFDRRK-KNYSSQK 417
            S GF + K KN++ +K
Sbjct: 418 ASVGFKKPKNKNFTRKK 434


>gi|330818246|ref|YP_004361951.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           gladioli BSR3]
 gi|327370639|gb|AEA61995.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           gladioli BSR3]
          Length = 505

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 164/372 (44%), Positives = 235/372 (63%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTEPTPIQTQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L    A      R  R LIL PTRELAAQV ++   YGK   L   ++ GG+    Q 
Sbjct: 61  QRLNASTAAQAGGKRAVRALILTPTRELAAQVEESVRAYGKYLKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + ++ ++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSQLDILVLDEADRMLDMGFIHDIKRVLARLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            +K  LL 
Sbjct: 181 KRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETIAQKIYPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + L+ FK GT+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLGKDGISALAIHGNKSQSARTRALTEFKAGTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV N+++PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IEKLI++++
Sbjct: 358 LRDIEKLIKREI 369


>gi|322417740|ref|YP_004196963.1| DEAD/DEAH box helicase domain-containing protein [Geobacter sp.
           M18]
 gi|320124127|gb|ADW11687.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18]
          Length = 442

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 172/417 (41%), Positives = 246/417 (58%), Gaps = 15/417 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L LS  +V A+   GY +PTPIQ ++IPL L   D+ G AQTGTGKTASFVLP L
Sbjct: 1   MSFESLNLSAPLVKAINACGYTEPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPAL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L    AR + PR L+L PTRELA QV D  + YGK   +    ++GG+P+  Q   L
Sbjct: 61  ERLLVPSPARGKGPRILVLTPTRELANQVVDAVKTYGKFMRVRCGSILGGMPYREQMMLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++DH +R  +  + +E+LV+DEADRMLDMGF   +  I +  P  RQ
Sbjct: 121 SQPVDIIVATPGRLIDHLDRRSINFSRLEMLVLDEADRMLDMGFSEDVDRIAAAAPAERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLF+ATM D + K+++  L++P R+ V+    T  +IE     T      K  LLQ L+
Sbjct: 181 TLLFTATMDDAMAKLAQRLLKDPVRVAVDGQQLTNLSIEQRLHVT-DDMRHKNRLLQHLV 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  IIF   KK+   L   L  QG +  A+HG++ Q +R + ++N + G ++L+
Sbjct: 240 ADASVTK-AIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNRTITNMRRGKVRLL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P  AE+Y+HRIGRTGRAG  G A +  +  ++ ++D 
Sbjct: 299 VATDVAARGLDVSGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMNEVAYLDR 358

Query: 360 IEKLIEKKVDWLNGDLSSLNP--PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           IE+L  K +      +  L P  PL +   +    ARK  P       FD RKK ++
Sbjct: 359 IERLTGKPLPQHV--IEGLEPSRPLRR--NSGGPGARKGRP------SFDPRKKGFA 405


>gi|327393211|dbj|BAK10633.1| putative ATP-dependent RNA helicase RhlE [Pantoea ananatis AJ13355]
          Length = 449

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 162/374 (43%), Positives = 237/374 (63%), Gaps = 6/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLSGRDLLASAQTGTGKTAGFTLPLL 60

Query: 61  TILEK--GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L    G  R R P R LIL PTRELAAQV +N  +Y K   L   ++ GG+    Q  
Sbjct: 61  QKLSANTGAVRGRRPVRALILTPTRELAAQVGENVVEYSKYLPLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ +E+LV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLVHQNAVDLSQVEVLVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++E  L NP+++EV   ++ +E +       +    +K  LL Q
Sbjct: 181 RQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTASEQVSQQV--HFVDKKRKRELLSQ 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK G I+
Sbjct: 239 LI-GEGNWQQVLVFTRTKHGANHLAEQLGKDGITAAAIHGNKSQGARTRALADFKSGAIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN AE+Y+HRIGRTGRA   G A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGVALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL 371
             IE+L+++++  L
Sbjct: 358 RDIERLLKREIPRL 371


>gi|313906550|ref|ZP_07839880.1| DEAD/DEAH box helicase domain protein [Eubacterium cellulosolvens
           6]
 gi|313468619|gb|EFR63991.1| DEAD/DEAH box helicase domain protein [Eubacterium cellulosolvens
           6]
          Length = 524

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 170/446 (38%), Positives = 262/446 (58%), Gaps = 33/446 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L  ++  AV+ AGY + TPIQ KT+P++L+  D+   AQTGTGKTA+F LP+L
Sbjct: 1   MKFQELDLKQELQNAVVKAGYTEATPIQEKTMPVILEGRDLIACAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+ G   VR  R+L+L PTRELA Q+ +NF+KYG+   L    + GG   + Q + L 
Sbjct: 61  EKLDNGE--VRKLRSLVLTPTRELAVQIFENFKKYGRYLPLRAVCIYGGAKQKPQMEALR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ T GR++D+ N G + +  IEI V+DEADRMLDMGFI  ++ I   +   RQT
Sbjct: 119 RGCDILVATLGRLMDYMNLGLVSLKGIEIFVLDEADRMLDMGFINDVRKIAGSMNTDRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQL 238
           L+FSATM  E++++    L++P  + V   S+ A+T++   CFV     +S K  +L ++
Sbjct: 179 LMFSATMPKEIEQLGRELLRDPADVRVAPQSTAADTVDQKICFVG----HSDKLKVLAEI 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ ++  +  IIF   K     +  +L + G +  AIHG+  Q  R   L  +K G   +
Sbjct: 235 LKQEEVTRT-IIFTRTKHGADRVARNLTRSGIAAKAIHGDKTQGQRQSTLEGYKAGHFHV 293

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RGLDIP+V HV NF++P   E YIHRIGRTGRAG  G A TL  ++++  + 
Sbjct: 294 LVATDVASRGLDIPEVSHVINFNLPQEPEAYIHRIGRTGRAGESGIAITLCEEDEMDLLK 353

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +EK++++++            P  K + +     +KN  +P  + G  RRK   +S K+
Sbjct: 354 EVEKILKREI------------PEMKTEYSIVLRGKKNGAVP--AAGDRRRKVGKTSGKA 399

Query: 419 ----------HIPLKESEKISKLQQD 434
                      +P ++ E +S+  +D
Sbjct: 400 GGSGERRNNGAVPARKRENLSRGTED 425


>gi|294142025|ref|YP_003558003.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293328494|dbj|BAJ03225.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 427

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 163/383 (42%), Positives = 241/383 (62%), Gaps = 15/383 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+ L L P+++  + + GY +PTPIQ + IP +L   D+   AQTG+GKTA+F LP+L  
Sbjct: 13  FSSLSLRPELLQVLTELGYTQPTPIQTQAIPAILAGQDIMAGAQTGSGKTAAFALPILNK 72

Query: 62  -----ILEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                 L+K  A+        R L+L PTRELA QV  +F KY K   +  AL+ GG+  
Sbjct: 73  LTAQICLQKTEAQDSADKPAIRALVLTPTRELALQVHGSFVKYAKLTQVKSALVYGGVSI 132

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           +AQ + L  G D+L+ TPGR+LDH  RG L +N +E LV DEADRMLDMGF   I  I  
Sbjct: 133 DAQAQILAAGVDILVATPGRLLDHLRRGSLNLNQLEFLVFDEADRMLDMGFKDEIDAIVK 192

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +P TRQTLLFSAT  + +  +S++ L++PK+IEV   ++ A  I+    A      +K 
Sbjct: 193 QLPKTRQTLLFSATFDESIYGLSQSLLRDPKQIEVGERNAAAVEIDQRVYAV--DSDRKL 250

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           AL+  L++S + ++  +IF  +K     L  +L K G S  A HG++ Q +R K+L  FK
Sbjct: 251 ALVTHLIESGN-LQQVLIFSRKKLAADKLAANLTKAGISAQAFHGDLSQGAREKVLQGFK 309

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +G ++++VA+D+AARG+DI D+ +V N+++P +AE+Y+HRIGRTGRAG  G A TL+  E
Sbjct: 310 DGEVRVLVATDVAARGIDIIDLNYVINYELPYKAEDYVHRIGRTGRAGNKGLAITLLCSE 369

Query: 353 DIKHIDAIEKLIEKKV--DWLNG 373
           D   ++ +E +++K++   WL G
Sbjct: 370 DEHLLEEVEVVLDKRLPQQWLAG 392


>gi|313675971|ref|YP_004053967.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312942669|gb|ADR21859.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 439

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 167/419 (39%), Positives = 258/419 (61%), Gaps = 9/419 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+ ++  A+ D GY KP+ IQ+K IP +L  HDV GIAQTGTGKTA+FVLP+L  
Sbjct: 8   FQDFKLNKQLFNAIDDLGYQKPSEIQVKAIPRILNGHDVIGIAQTGTGKTAAFVLPLLMK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+   PR LI+ PTREL  QV +N  + GK  +L    L GGI  + Q +++  G
Sbjct: 68  LK--YAQGHDPRALIIAPTRELVMQVYENILELGKYTDLRTVCLYGGIGPKKQAQEVAEG 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+LD ++ G L    I+  ++DEADRM+DMGF+P I+ +  L+P  +Q L 
Sbjct: 126 CDIIVATPGRLLDIYSAGVLQPKQIKTFILDEADRMMDMGFMPQIRRVLELLPMKKQNLF 185

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT  ++++K +  F   P+++EV   + TAE IE         +  K  LL+ L +++
Sbjct: 186 FSATFPEKVEKYAYEFTDFPEKVEVTPETMTAELIEQSLYHV-PNFLTKINLLKYLFENE 244

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQ-GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           D     +IF   +KN  N+   +E++    V  IH N  Q +R+  ++ FK G ++++V+
Sbjct: 245 D-FSRVLIFVRTRKNANNVYSFIERKISEEVRVIHANKAQSTRINAINEFKSGNVRVLVS 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+ +V HV NF+VPN+ E+Y+HRIGRTGRA  HG A + V   D+ HI+ IE
Sbjct: 304 TDVTARGIDVEEVSHVINFEVPNKYEDYVHRIGRTGRAEHHGIAISFVDPSDVYHINKIE 363

Query: 362 KLIEKKVDWLN--GDLSSLNP-PLEKIDIAQHNHARKNNPIPQKSTGF-DRRKKNYSSQ 416
           +LI+KK+  ++   ++  ++  P EK D+ Q    +K+   P     F +++KKN S +
Sbjct: 364 ELIQKKIKVIDLPKEIELMDTLPSEKKDMEQEIDRQKHLENPDFQGAFHEKKKKNLSGK 422


>gi|299067900|emb|CBJ39113.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum CMR15]
          Length = 548

 Score =  310 bits (793), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 164/376 (43%), Positives = 238/376 (63%), Gaps = 11/376 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY +PTPIQ + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMP-------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
             L   +  +V+ P       R L+L PTRELAAQV ++   YGK   L   ++ GG+  
Sbjct: 61  HRLSAVQPNKVQTPNGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q   L+RG D+++ TPGR+LDH  +  + +++IE+LV+DEADRMLDMGFI  I+ I +
Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           ++P  RQ LLFSAT +D+++ +++  L  P  IEV   ++TAET+E           +K 
Sbjct: 181 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPV--DRERKR 238

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL +L+   D     ++F   K     L   L + G    AIHGN  Q +R + LS FK
Sbjct: 239 ELLAKLVSDND-WHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALSEFK 297

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT++++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  +
Sbjct: 298 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 357

Query: 353 DIKHIDAIEKLIEKKV 368
           +   +  IE+LI++++
Sbjct: 358 EHGLLRDIERLIKREL 373


>gi|84515959|ref|ZP_01003320.1| DEAD/DEAH box helicase [Loktanella vestfoldensis SKA53]
 gi|84510401|gb|EAQ06857.1| DEAD/DEAH box helicase [Loktanella vestfoldensis SKA53]
          Length = 447

 Score =  310 bits (793), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 160/382 (41%), Positives = 237/382 (62%), Gaps = 5/382 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  LGL+P+++  + + G   PTPIQ + IP  +   DV G+AQTGTGKTA+F LPM+
Sbjct: 2   MDFDMLGLAPRLIAVLKEQGITDPTPIQTQAIPHAMNGRDVMGLAQTGTGKTAAFGLPMI 61

Query: 61  TILEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L K   +   +  R L+L PTRELA Q+ADN   Y K  +L VAL++GG    AQ K+
Sbjct: 62  HALMKAGVKPNPKAVRGLVLAPTRELAKQIADNLTAYTKGSHLKVALVVGGAGITAQTKR 121

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+L+ TPGR++D  +R  + ++    LV+DEAD+MLDMGFI  ++ I  L+   R
Sbjct: 122 LAGGVDLLVATPGRLIDLLDRRAVRLDETVYLVLDEADQMLDMGFIHALRRIAPLLAKDR 181

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT++FSATM   + ++++ FL +  R++VN P    + I    V   AQ +K   L+  L
Sbjct: 182 QTMMFSATMPKLMSELADAFLTDAVRVQVNPPGQAVKKIAQS-VHFVAQAAKTDLLVDLL 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            + +D +   ++F   K     L  +LE +GF+  +IHGN  Q  R + +  FK G +++
Sbjct: 241 DKHRDEL--ALVFGRTKHGCEKLYKTLEAKGFAAASIHGNKSQGQRERAIEAFKAGKVRV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DIP V HV+N+D+PN AENY+HRIGRT RAG  G A  LVA +++  + 
Sbjct: 299 LVATDVAARGIDIPGVRHVYNYDLPNVAENYVHRIGRTARAGADGSAIALVAPDEMIELQ 358

Query: 359 AIEKLIEKKVDWLNGDLSSLNP 380
            IEK +++ +   +G    + P
Sbjct: 359 DIEKAMKETIPVASGRPWEIMP 380


>gi|217419732|ref|ZP_03451238.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           576]
 gi|217397036|gb|EEC37052.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           576]
          Length = 485

 Score =  310 bits (793), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 164/372 (44%), Positives = 236/372 (63%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L     + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            +K  LL 
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|167892936|ref|ZP_02480338.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           7894]
          Length = 416

 Score =  310 bits (793), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 164/372 (44%), Positives = 236/372 (63%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L     + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            +K  LL 
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|167844421|ref|ZP_02469929.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           B7210]
          Length = 427

 Score =  310 bits (793), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 164/372 (44%), Positives = 236/372 (63%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L     + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            +K  LL 
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|126734915|ref|ZP_01750661.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
           CCS2]
 gi|126715470|gb|EBA12335.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
           CCS2]
          Length = 435

 Score =  310 bits (793), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 165/386 (42%), Positives = 238/386 (61%), Gaps = 5/386 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  LGL+P++V  + + G   PTPIQ + IP  +   DV G+AQTG+GKTA+F LPM+
Sbjct: 1   MDFDMLGLAPRLVNVLKEQGITDPTPIQTQAIPHAMNGRDVMGLAQTGSGKTAAFGLPMI 60

Query: 61  TILEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L K   +   +  R LIL PTRELA Q+ADN   Y K  +L VAL++GG    AQ K+
Sbjct: 61  HALMKAGVKPNPKTSRGLILAPTRELAKQIADNLTAYTKGSHLKVALVVGGAGIVAQTKR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+L+ TPGR++D  +R  + ++    LV+DEAD+MLDMGFI  ++ I  L+   R
Sbjct: 121 LAGGVDLLVATPGRLIDLLDRRAVRLDETIYLVLDEADQMLDMGFIHALRRIAPLLAKDR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT++FSATM   + +++  +L +  R++VN P    + I    V   AQ +K   L++ L
Sbjct: 181 QTMMFSATMPKLMGELAGTYLTDAVRVQVNPPGQAVKKINQS-VHFVAQAAKTDLLIELL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            + +D +   I+F   K     L   LEK+GF+  +IHGN  Q  R + L  FK G  ++
Sbjct: 240 DKHRDEL--AIVFGRTKHGCEKLYKVLEKKGFAAASIHGNKSQGQRQRALEAFKSGKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIPDV  V+N+D+PN AENY+HRIGRT RAG  G A  LVA +++  + 
Sbjct: 298 LVATDVAARGLDIPDVRFVYNYDLPNVAENYVHRIGRTARAGADGSAVALVAPDEMIELK 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
            IEK +++ +   +G    + P  +K
Sbjct: 358 DIEKAMKETIPVASGREWEIQPGQKK 383


>gi|209363862|ref|YP_001424084.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111]
 gi|212212853|ref|YP_002303789.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212]
 gi|212219099|ref|YP_002305886.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154]
 gi|215919015|ref|NP_819700.2| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
           493]
 gi|206583900|gb|AAO90214.2| ATP-dependent RNA helicase [Coxiella burnetii RSA 493]
 gi|207081795|gb|ABS77088.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111]
 gi|212011263|gb|ACJ18644.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212]
 gi|212013361|gb|ACJ20741.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154]
          Length = 420

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 172/407 (42%), Positives = 251/407 (61%), Gaps = 13/407 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS +++ A+ + GYV+PTP+Q + IP++LQ  DV   AQTGTGKTA F LP+L
Sbjct: 10  MSFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLL 69

Query: 61  TILEKGRA---RVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L   R    R   P  R LIL PTRELA QV +    YGK   L   ++ GG+  + Q
Sbjct: 70  QRLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQ 129

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG D+L+ TPGR+LD  N+G L ++ +E  V+DEADRMLDMGF+P I+ I  L+P
Sbjct: 130 INHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLP 189

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +RQ LLFSAT + E++++++  L +P  IEV   ++ A  I H  V       +K  LL
Sbjct: 190 ESRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITH--VVHPVDRQRKRELL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             ++ S++  +  ++F   K     L   LE  G S  AIHGN  Q +RM+ L+ FK+G 
Sbjct: 248 SFMIGSKN-WRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGK 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+AARGLDI  + HV NF++P+ A++Y+HR+GRTGRA   G A +LV+ ++++
Sbjct: 307 IRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVR 366

Query: 356 HIDAIEKLIEKKV--DWLNGDLSS---LNPPLEKIDIAQHNHARKNN 397
            +  IEKL++ K+  + + G   S      P++ +  A+ N   KNN
Sbjct: 367 LLRDIEKLLQSKMPQEVIPGYEPSPFTKAAPVQAVRRARSNQRGKNN 413


>gi|115525740|ref|YP_782651.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris BisA53]
 gi|115519687|gb|ABJ07671.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           BisA53]
          Length = 490

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 171/423 (40%), Positives = 242/423 (57%), Gaps = 13/423 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+  +  A+ +  Y  PTPIQ +TIPL L   DV GIAQTGTGKTASF LP+L 
Sbjct: 17  SFQVFGLAEPLTRALAEENYTTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILH 76

Query: 62  ILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            + + R +  +P+T   L+L PTREL+ Q+ ++F  YG++  L  AL IGG+P   Q + 
Sbjct: 77  RMLENRIKP-LPKTCRVLVLSPTRELSGQILESFNAYGRHIRLASALAIGGVPMGRQVRS 135

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +  G DVL+ TPGR+LD      L +  +E LV+DEADRMLDMGFI  I+ I + +P  R
Sbjct: 136 IMPGLDVLVATPGRLLDLVQTNALKLTQVEFLVLDEADRMLDMGFIHDIRKIVAKLPIKR 195

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM  ++  ++E  L++P R+ V   +ST + I    +     +S K  +L Q+
Sbjct: 196 QTLFFSATMPKDIADLAEQMLRDPARVAVTPVASTVDRITQRVI--QLDHSAKPTVLAQI 253

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ QD +   ++F   K     +   L + G +  AIHGN  Q  R ++L+ F+ G I  
Sbjct: 254 LK-QDDVNRALVFTRTKHGADKVVKGLARAGIAAEAIHGNKSQNHRERVLAAFRTGEILT 312

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  V HV NFD+PN  E Y+HRIGRT RAG  G A +L A E++ ++ 
Sbjct: 313 LVATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGAEGVAISLCAGEELAYLR 372

Query: 359 AIEKLI------EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            IEKLI      E +    + D ++   P      A H HA +    P       RR+  
Sbjct: 373 DIEKLIRITLPREDRRTPGHRDTAAKTSPHRGAHAAPHVHAPRGEHAPGSKAANRRRRPA 432

Query: 413 YSS 415
             S
Sbjct: 433 GGS 435


>gi|183222181|ref|YP_001840177.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912238|ref|YP_001963793.1| superfamily II DNA and RNA helicase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776914|gb|ABZ95215.1| Superfamily II DNA and RNA helicase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167780603|gb|ABZ98901.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 471

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 165/364 (45%), Positives = 225/364 (61%), Gaps = 5/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L   +  AV + GY KPTPIQI+ IPL+L  HD+ G AQTGTGKTA+F LPM+  
Sbjct: 8   FSDLKLDRYIQKAVAETGYTKPTPIQIQAIPLLLDNHDLLGCAQTGTGKTAAFALPMIHN 67

Query: 63  LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L   RA+   + PR+L+L PTRELA QV ++F  YGK   +  A++ GG+    Q K + 
Sbjct: 68  LISTRAKPNPKQPRSLVLVPTRELAIQVHESFVLYGKYTQIRTAVIFGGVGQNPQAKAIA 127

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR++D  N+  + + N+EI V+DEADRMLDMGFI  I+ I S +P  RQ 
Sbjct: 128 SGLDVLIATPGRLVDLMNQNLVSLKNLEIFVLDEADRMLDMGFIHDIRKIISYLPKRRQN 187

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++ + L  P RI+V   SST E I    +  Y + + K  LL  L +
Sbjct: 188 LFFSATMPPEIEKLANSILVEPIRIDVTPVSSTVELISQSVM--YTELADKKNLLLHLFK 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  K  IIF   K     +   L K G     IHGN  Q +R + L +F+ G  + +V
Sbjct: 246 DKN-FKKTIIFTKTKHGANKISELLNKSGIKTDVIHGNKSQSARQRALEDFRSGKNRALV 304

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI D+ HV N+++P   E Y+HRIGRT RAG++G A  +   ++   I  I
Sbjct: 305 ATDLAARGIDIDDITHVINYEIPYVPETYVHRIGRTARAGKNGIAIAIAEADERSLIKDI 364

Query: 361 EKLI 364
           EK+I
Sbjct: 365 EKVI 368


>gi|119510127|ref|ZP_01629266.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414]
 gi|119465188|gb|EAW46086.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414]
          Length = 437

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 169/377 (44%), Positives = 234/377 (62%), Gaps = 10/377 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS +++ AV + GY +PTPIQ++ IP VL   D+   AQTGTGKTA F LPML
Sbjct: 1   MSFSTLGLSHEIIRAVTEQGYTEPTPIQMQAIPAVLSGSDLLAGAQTGTGKTAGFTLPML 60

Query: 61  TILE-----KGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L      K  +    P R LIL PTRELAAQV  +   YGK   L   ++ GG+    
Sbjct: 61  HRLSSDKNVKSTSHGYSPIRALILTPTRELAAQVESSVRDYGKYLKLNSMVMFGGVSINP 120

Query: 115 QNKKLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           Q + L+ G  D+L+ TPGR+LDH  +G + +++IEILV+DEADRMLDMGFI  I+ I SL
Sbjct: 121 QKRLLKEGRVDILVSTPGRLLDHVQQGTVNLSHIEILVLDEADRMLDMGFIRDIRRILSL 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLF AT +++++ ++   L  PK IEV   + TA+T+            KK  
Sbjct: 181 LPKQRQNLLFFATFSEKIKALAAGLLNRPKMIEVARRNVTADTVTQKVYKV--DRDKKRQ 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L++ QD     ++F   K     L   L ++     AIHGN  Q SR   L+ FK 
Sbjct: 239 LLAHLIR-QDNWYQVLVFTRTKYGADRLVKQLGEERIQALAIHGNKSQSSRTHTLAKFKN 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++Q++VA+D+AARGLDI ++ HV NFD+PN AE+Y+HRIGRTGRAG  G+A +LV+ ++
Sbjct: 298 NSLQVLVATDIAARGLDISELPHVVNFDLPNVAEDYVHRIGRTGRAGASGEAISLVSADE 357

Query: 354 IKHIDAIEKLIEKKVDW 370
              +  IEKLI +++ +
Sbjct: 358 YHLLADIEKLIAQRLPF 374


>gi|167909652|ref|ZP_02496743.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           112]
          Length = 419

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 164/372 (44%), Positives = 236/372 (63%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L     + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            +K  LL 
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|167737241|ref|ZP_02410015.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           14]
 gi|167822848|ref|ZP_02454319.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           9]
          Length = 414

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 164/372 (44%), Positives = 236/372 (63%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L     + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            +K  LL 
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|18645108|gb|AAL76409.1| ATP-dependent RNA helicase RhlE [uncultured marine proteobacterium]
          Length = 446

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 159/366 (43%), Positives = 233/366 (63%), Gaps = 4/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ AV D GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 10  MSFSTLGLSESLLKAVADEGYTAPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLL 69

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L KG+ A+    R L+L PTRELAAQVA++ + YGK  NL  A++ GG+    Q  +L
Sbjct: 70  HGLSKGQPAKANQVRALVLTPTRELAAQVAESVDIYGKYLNLRSAVVFGGVKINPQMMRL 129

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+LI TPGR+LD + +  +    +E+L++DEADRMLDMGFI  I+ I   +P  RQ
Sbjct: 130 RKGVDILIATPGRLLDLYQQNAMSFQKLEVLILDEADRMLDMGFIHDIRRIMKALPKKRQ 189

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +++++ +++  + NP  I V   +STA ++           ++K  LL +L+
Sbjct: 190 NLMFSATFSEDIRDLAKTIVNNPVEISVTPRNSTAVSVTQWIHPV--DKNQKRHLLVELI 247

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q   +  ++F   K+    L   LEK+     AIHGN  Q +R + LS FK G ++++
Sbjct: 248 -NQHNWEQVLVFSRTKRGANRLAEFLEKKDIQAAAIHGNKSQGARTRALSEFKSGKLRVL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N D+P  A++Y+HRIGRTGRAG  G+A +LV+ ++ + +  
Sbjct: 307 VATDIAARGLDIEQLPQVVNLDLPEVAQDYVHRIGRTGRAGATGQAISLVSADEAQLLQD 366

Query: 360 IEKLIE 365
           IE+LI+
Sbjct: 367 IERLIQ 372


>gi|222110403|ref|YP_002552667.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221729847|gb|ACM32667.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
          Length = 578

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 165/404 (40%), Positives = 249/404 (61%), Gaps = 20/404 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AV + GY  PTPIQ + IP VL  HD+   AQTGTGKTA+F LPML
Sbjct: 1   MTFEELKLAPAILRAVQEQGYDNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L +G+A       +  R L+L PTRELAAQV ++   YGK  +L   ++ GG+    Q
Sbjct: 61  HRLAEGQAPRSQFGGKGVRALVLTPTRELAAQVEESVRGYGKYLDLNSTVIFGGVGMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++++RG DVL+ TPGR+LD   +G + ++ +EILV+DEADRMLDMGFI  ++ + +L+P
Sbjct: 121 IERIKRGVDVLVATPGRLLDLQQQGFMDLSTVEILVLDEADRMLDMGFIHDVKKVLALLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            ++Q+LLFSAT +D++++++ + L+NP+ I+V   ++T + I    V       KK  +L
Sbjct: 181 QSKQSLLFSATFSDDIRELANSLLKNPQSIQVTPRNTTVQRISQ--VIHPVGRGKKKQVL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             ++Q  D     ++F   K    N+   L K G S  A+HGN  Q +R + L  FK G 
Sbjct: 239 LHIIQEHD-WSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGQ 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ +VA+D+AARG+DI D+ HV N+++PN  E+Y+HRIGRTGRAGR G A +LV  ++  
Sbjct: 298 IRALVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGREGHAVSLVCMDEEG 357

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
            +  IE+  ++++            P++ ID    +   K  PI
Sbjct: 358 FMMEIERFTKQEI------------PVQVIDGFGPDEGEKAEPI 389


>gi|121594947|ref|YP_986843.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
           JS42]
 gi|120607027|gb|ABM42767.1| DEAD/DEAH box helicase domain protein [Acidovorax sp. JS42]
          Length = 577

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 165/404 (40%), Positives = 249/404 (61%), Gaps = 20/404 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AV + GY  PTPIQ + IP VL  HD+   AQTGTGKTA+F LPML
Sbjct: 1   MTFEELKLAPAILRAVQEQGYDNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L +G+A       +  R L+L PTRELAAQV ++   YGK  +L   ++ GG+    Q
Sbjct: 61  HRLAEGQAPRSQFGGKGVRALVLTPTRELAAQVEESVRGYGKYLDLNSTVIFGGVGMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++++RG DVL+ TPGR+LD   +G + ++ +EILV+DEADRMLDMGFI  ++ + +L+P
Sbjct: 121 IERIKRGVDVLVATPGRLLDLQQQGFMDLSTVEILVLDEADRMLDMGFIHDVKKVLALLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            ++Q+LLFSAT +D++++++ + L+NP+ I+V   ++T + I    V       KK  +L
Sbjct: 181 QSKQSLLFSATFSDDIRELANSLLKNPQSIQVTPRNTTVQRISQ--VIHPVGRGKKKQVL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             ++Q  D     ++F   K    N+   L K G S  A+HGN  Q +R + L  FK G 
Sbjct: 239 LHIIQEHD-WSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGQ 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ +VA+D+AARG+DI D+ HV N+++PN  E+Y+HRIGRTGRAGR G A +LV  ++  
Sbjct: 298 IRALVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGREGHAVSLVCMDEEG 357

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
            +  IE+  ++++            P++ ID    +   K  PI
Sbjct: 358 FMMEIERFTKQEI------------PVQVIDGFGPDEGEKAEPI 389


>gi|17545258|ref|NP_518660.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
 gi|17427549|emb|CAD14067.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
           GMI1000]
          Length = 540

 Score =  309 bits (792), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 164/376 (43%), Positives = 239/376 (63%), Gaps = 11/376 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY +PTPIQ + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMP-------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
             L   +  +V+ P       R L+L PTRELAAQV ++   YGK   L   ++ GG+  
Sbjct: 61  HRLSAVQPNKVQTPHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q   L+RG D+++ TPGR+LDH  +  + +++IE+LV+DEADRMLDMGFI  I+ I +
Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           ++P  RQ LLFSAT +D+++ +++  L  P  IEV   ++TAET+E           +K 
Sbjct: 181 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPV--DRERKR 238

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL +L+   D  +  ++F   K     L   L + G    AIHGN  Q +R + LS FK
Sbjct: 239 ELLAKLVSDNDWHQV-LVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALSEFK 297

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT++++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  +
Sbjct: 298 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 357

Query: 353 DIKHIDAIEKLIEKKV 368
           +   +  IE+LI++++
Sbjct: 358 EHGLLRDIERLIKREL 373


>gi|146338133|ref|YP_001203181.1| ATP-dependent RNA helicase [Bradyrhizobium sp. ORS278]
 gi|146190939|emb|CAL74944.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
           (rhlE gene) [Bradyrhizobium sp. ORS278]
          Length = 473

 Score =  309 bits (792), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 163/366 (44%), Positives = 229/366 (62%), Gaps = 6/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+  +  A+ +  Y  PTPIQ +TIPL LQ  DV GIAQTGTGKTASF LP+L  
Sbjct: 4   FQDFNLADALTRALKEENYTTPTPIQAQTIPLALQGRDVIGIAQTGTGKTASFALPILHR 63

Query: 63  LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L + R +   +  R L+L PTREL+ Q+ D+F  YG++  L+  L IGG+P   Q + + 
Sbjct: 64  LLENRIKPQPKTARVLVLSPTRELSGQILDSFNTYGRHIRLSSTLAIGGVPMGRQVRAVM 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVL+ TPGR+LD      L ++++E LV+DEADRMLDMGFI  I+ I + +P  RQT
Sbjct: 124 PGVDVLVATPGRLLDLVQGNALKLSHVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  ++ +++++ L++P R+ V   SST E I    +     +S K +LL QLL+
Sbjct: 184 LFFSATMPKDIAELADSMLRDPARVAVTPVSSTVERIAQRVI--QVDHSAKPSLLAQLLK 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + +   ++F   K     +   LEK G    AIHGN  Q  R + L+ F+ G I+ +V
Sbjct: 242 N-EPVNRALVFTRTKHGADKVVKGLEKAGIPAQAIHGNKSQNHRERTLAAFRTGEIRTLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED-IKHIDA 359
           A+D+AARG+D+  V HV NFD+PN  E Y+HRIGRT RAG  G A +LVA  D + ++  
Sbjct: 301 ATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTARAGADGVAISLVAGADEMSYLRD 360

Query: 360 IEKLIE 365
           IE+L +
Sbjct: 361 IERLTK 366


>gi|303257750|ref|ZP_07343762.1| putative ATP-dependent RNA helicase RhlE [Burkholderiales bacterium
           1_1_47]
 gi|331001188|ref|ZP_08324815.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
           YIT 11859]
 gi|302859720|gb|EFL82799.1| putative ATP-dependent RNA helicase RhlE [Burkholderiales bacterium
           1_1_47]
 gi|329569120|gb|EGG50912.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
           YIT 11859]
          Length = 458

 Score =  309 bits (792), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 169/372 (45%), Positives = 234/372 (62%), Gaps = 12/372 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
           +F   GL+P ++ A+   GY KPT IQ K IP+VLQ  DV G AQTGTGKTASF LP   
Sbjct: 6   NFEQFGLAPNLLSAIKRMGYTKPTAIQCKAIPVVLQGRDVMGAAQTGTGKTASFGLPVLQ 65

Query: 59  -MLTILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +L +     +  R P R LIL PTRELA Q A+    Y  +  + + ++ GG+  + Q 
Sbjct: 66  KLLPLANTSTSPARHPVRVLILSPTRELADQTAEALSNYAADTPIRIGVVYGGVDIKPQA 125

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L +G ++LI TPGR+LDH  +    +N   I+++DEADRMLDMGF+P I  I + +P 
Sbjct: 126 EALRKGVEILIATPGRLLDHLEQRNTNLNQSGIVILDEADRMLDMGFLPDISRILNALPK 185

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ L+FSAT + E++K++ NFL +P  IEV   ++TA TI+   V +  +  K  AL+ 
Sbjct: 186 KRQNLMFSATFSPEIKKLAGNFLTDPVVIEVARQNATAATIKQE-VFSVNELQKTDALV- 243

Query: 237 QLLQSQDTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
           +LL+++    +G     I+F N K     L   LEK GF+  AIHG+  Q  R+K+L +F
Sbjct: 244 ELLKTRGEDPDGKPLQTIVFVNAKLTARRLARELEKCGFNADAIHGDKTQEERLKLLKDF 303

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K+GT+ +MVA+D+AARGLDI ++  V N+DVP   E+Y+HRIGRTGRAG  G A  LV  
Sbjct: 304 KDGTLNIMVATDVAARGLDIAELPLVINYDVPFVPEDYVHRIGRTGRAGSSGLALMLVTD 363

Query: 352 EDIKHIDAIEKL 363
           +D K  DAI KL
Sbjct: 364 KDKKSFDAIRKL 375


>gi|300692445|ref|YP_003753440.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum PSI07]
 gi|299079505|emb|CBJ52183.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum PSI07]
          Length = 549

 Score =  309 bits (792), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 164/376 (43%), Positives = 239/376 (63%), Gaps = 11/376 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY +PTPIQ + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRAR-------VRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
             L   +         +R P R L+L PTRELAAQV ++   YGK   L   ++ GG+  
Sbjct: 61  HRLSAVQPNKVHTSHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q   L+RG D+++ TPGR+LDH  +  + +++IE+LV+DEADRMLDMGFI  I+ I +
Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           ++P  RQ LLFSAT +D+++ +++  L  P  IEV   ++TAET+E           +K 
Sbjct: 181 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPV--DRERKR 238

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL +L++  D  +  ++F   K     L   L + G    AIHGN  Q +R + LS FK
Sbjct: 239 ELLAKLVRDNDWHQV-LVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALSEFK 297

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT++++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  +
Sbjct: 298 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 357

Query: 353 DIKHIDAIEKLIEKKV 368
           +   +  IE+LI++++
Sbjct: 358 EHGLLRDIERLIKREL 373


>gi|296157319|ref|ZP_06840155.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295892655|gb|EFG72437.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 520

 Score =  309 bits (792), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 165/373 (44%), Positives = 233/373 (62%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS ++V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSEQLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRARV-----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L    A       R  R LIL PTRELAAQV ++   YGK   L   ++ GG+    Q
Sbjct: 61  QRLNSSPAVANGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G D+++ TPGR+LDH  +  + ++++EILV+DEADRMLDMGFI  I+ + + +P
Sbjct: 121 IGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT +DE++ +++N L +P  IEV   ++TAE++            KK  LL
Sbjct: 181 PKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAESVAQKIHPV--DRDKKRELL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++  +  +  ++F   K     L   L K G +  AIHGN  Q +R + L+ FK+GT
Sbjct: 239 THLIKQHNWFQV-LVFTRTKHGANRLAEQLTKDGINSLAIHGNKSQSARTRALAEFKDGT 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARG+DI  + HV N+D+PN  E+Y+HRIGRTGRAG  G+A +LV  ++++
Sbjct: 298 LQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQ 357

Query: 356 HIDAIEKLIEKKV 368
            +  IEKLI++ V
Sbjct: 358 LLKDIEKLIKRPV 370


>gi|332285242|ref|YP_004417153.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
 gi|330429195|gb|AEC20529.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
          Length = 455

 Score =  309 bits (792), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 165/371 (44%), Positives = 230/371 (61%), Gaps = 8/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D GL P V+ AV + GY  PTPIQ + +P+V+   DV G AQTGTGKTA+F LP+L  
Sbjct: 14  FSDFGLHPSVLQAVTETGYTTPTPIQAQAMPMVMDGRDVMGAAQTGTGKTAAFTLPILHR 73

Query: 63  LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L +      +  R P R LIL PTRELA QVAD+   Y K   L   ++ GG+    Q  
Sbjct: 74  LMQFANTSASPARHPVRALILTPTRELADQVADSVTTYAKFTPLRSTVVFGGVDIGPQRD 133

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG ++LI TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF+P +  I  L+P  
Sbjct: 134 ALRRGCEILIATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLDRIVRLLPAK 193

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT ++E++K+  ++L NP  IEV   ++TA+T+    +A     S K A +  
Sbjct: 194 RQGLLFSATFSNEIRKLGRSYLSNPAEIEVAARNATADTVTQ--IAYPLAGSDKRAAVVH 251

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++S+      I+F N K     L   L + G    +IHG+  Q  RMK L  FK G ++
Sbjct: 252 LVKSRG-FNQVIVFSNTKIGTSRLARELVRDGVKAESIHGDKSQLDRMKALDAFKAGELE 310

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  V  V N+D+P  AE+Y+HRIGRTGRAG  G+A      E+ +++
Sbjct: 311 VLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGNTGEAIAFFTPEEERYL 370

Query: 358 DAIEKLIEKKV 368
             IEKLI+ K+
Sbjct: 371 LDIEKLIKAKI 381


>gi|293603664|ref|ZP_06686084.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
           43553]
 gi|292817932|gb|EFF76993.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
           43553]
          Length = 493

 Score =  309 bits (792), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 163/380 (42%), Positives = 238/380 (62%), Gaps = 8/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FAD GL P ++ ++ + GY  PTPIQ + IP+V++  DV G AQTGTGKTA+F +P+L  
Sbjct: 19  FADFGLHPLLLQSIAETGYTVPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTVPILHR 78

Query: 61  --TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              +     +  R P R LIL PTRELA QV ++ ++Y K   L  A++ GG+    Q +
Sbjct: 79  LMPLANASASPARHPVRALILTPTRELADQVFESVKRYSKQTPLRSAVVFGGVDIGPQKE 138

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG ++L+ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF+P ++ I  L+P  
Sbjct: 139 ALRRGCEILVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQ 198

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT ++E++K+  ++L  P  IEV   ++TA TI    +A       K A +  
Sbjct: 199 RQGLLFSATFSNEIRKLGRSYLNQPVEIEVAARNATATTITQ--IAYKMSSDAKRAAVVH 256

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++S+  +K  I+F N K     L   LE+ G    +IHG+  Q  RMK L  FK G ++
Sbjct: 257 LVKSRG-LKQVIVFSNTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKAGDLE 315

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  V  V N+D+P  AE+Y+HRIGRTGRAG  G+A  L   ++ + +
Sbjct: 316 VLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPDEERFL 375

Query: 358 DAIEKLIEKKVDWLNGDLSS 377
             IEKLI+++V     DL +
Sbjct: 376 LDIEKLIKREVPRGTLDLPA 395


>gi|194442237|ref|YP_002040055.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194400900|gb|ACF61122.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
          Length = 453

 Score =  309 bits (791), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 163/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q++  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|197265494|ref|ZP_03165568.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197243749|gb|EDY26369.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
          Length = 453

 Score =  309 bits (791), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 163/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q++  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|255021847|ref|ZP_05293857.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus ATCC
           51756]
 gi|254968671|gb|EET26223.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus ATCC
           51756]
          Length = 429

 Score =  309 bits (791), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 157/369 (42%), Positives = 231/369 (62%), Gaps = 5/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL P +  A +  GY + TPIQ + IP +L+ HD+   AQTGTGKTA+F LP+L  
Sbjct: 20  FTELGLDPALCAAAVARGYEQATPIQARAIPEILKGHDILAAAQTGTGKTAAFALPILHR 79

Query: 63  LEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L +    +  R  R LIL PTRELAAQV DN   Y     +   +LIGG+    Q ++L 
Sbjct: 80  LARDPVSSGPRPVRALILVPTRELAAQVEDNIRLYRGQMPVRSLMLIGGVKIGPQMEQLR 139

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+++ TPGR+LDH  +  L ++ +E LV+DEADRMLDMGFI  I+ I  ++P  RQ 
Sbjct: 140 NGADIVVATPGRLLDHLQQRSLRLDRVETLVLDEADRMLDMGFIRDIRRIIGMLPAKRQN 199

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT + E+++++E  L  P  +EV   ++T ++I    +       +K  LL  L+ 
Sbjct: 200 LLFSATFSPEIRQLAEGLLHQPIAVEVTPANATVDSITQRVI--RVDQERKRDLLLHLMD 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +    +  +IF   K     L   +E++GFS  AIHGN  Q +R + L+ FK G+++ +V
Sbjct: 258 AHQWHQV-LIFTRTKHGADRLARQMEREGFSAMAIHGNKSQGARTRALAEFKSGSLRALV 316

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V NF++P  AE+Y+HRIGRTGRAG  G+A +LV+ E+   + A+
Sbjct: 317 ATDIAARGIDIQRLPRVVNFELPQVAEDYVHRIGRTGRAGEDGEAVSLVSGEERSQLQAV 376

Query: 361 EKLIEKKVD 369
           E+L+ ++ D
Sbjct: 377 ERLLRRRFD 385


>gi|168236748|ref|ZP_02661806.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194735725|ref|YP_002113911.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194711227|gb|ACF90448.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197290147|gb|EDY29504.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 453

 Score =  309 bits (791), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 163/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q++  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|117924939|ref|YP_865556.1| DEAD/DEAH box helicase [Magnetococcus sp. MC-1]
 gi|117608695|gb|ABK44150.1| DEAD/DEAH box helicase domain protein [Magnetococcus sp. MC-1]
          Length = 439

 Score =  309 bits (791), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 157/369 (42%), Positives = 231/369 (62%), Gaps = 5/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA L L   ++ A+  AGY  PTPIQ + IP +L   D+ GIAQTGTGKTA+F LP+L 
Sbjct: 3   DFASLNLVKPLLNALTQAGYTTPTPIQAQAIPHLLAGRDLLGIAQTGTGKTAAFALPILN 62

Query: 62  ILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L   KGR     PR LIL PTRELA+Q+ ++   YGK+   T  ++ GG+  + Q + L
Sbjct: 63  KLSQIKGRPAPNAPRALILTPTRELASQIGNSIAVYGKHVPTTHTVVFGGVGKQPQIRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD      + ++ I++ V+DEADRMLDMGFI  I+ I  ++P  R 
Sbjct: 123 SRGVDILVATPGRLLDLMGERHVRLDQIQVFVLDEADRMLDMGFIHDIRRIIKVIPAKRH 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  ++ +++E  L NP ++EV   S+T E I    +  +     K +LL+ +L
Sbjct: 183 TLLFSATMPKDIAELAEGLLTNPAKVEVTPESTTVERITQKVL--FVDKQNKRSLLKNVL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  ++++  ++F   K     +   L+K   +  AIHGN  Q +R K L  F++G ++++
Sbjct: 241 E-HESIEQVLVFTRTKHGANRVAEYLDKHRIASAAIHGNKSQSAREKALDGFRKGKLKVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HV NFD+PN +E+Y+HRIGRT RAGR G A +    E+  ++  
Sbjct: 300 VATDIAARGIDVAGISHVINFDLPNESESYVHRIGRTARAGRDGNAISFCDAEERGYLLD 359

Query: 360 IEKLIEKKV 368
           IEK I + V
Sbjct: 360 IEKTIRQTV 368


>gi|161614932|ref|YP_001588897.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168230715|ref|ZP_02655773.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168820033|ref|ZP_02832033.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194471685|ref|ZP_03077669.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|200390413|ref|ZP_03217024.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|161364296|gb|ABX68064.1| hypothetical protein SPAB_02686 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194458049|gb|EDX46888.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|199602858|gb|EDZ01404.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205334823|gb|EDZ21587.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205343118|gb|EDZ29882.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|320085093|emb|CBY94880.1| probable ATP-dependent RNA helicase DDX17 DEAD box protein 17;
           RNA-dependent helicase p72; DEAD box protein p72
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 454

 Score =  309 bits (791), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 163/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q++  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|145589523|ref|YP_001156120.1| DEAD/DEAH box helicase domain-containing protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047929|gb|ABP34556.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 426

 Score =  309 bits (791), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 175/414 (42%), Positives = 248/414 (59%), Gaps = 7/414 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGLS  ++ A+ + GY  PTPIQ K+IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MLFTDLGLSEPILRAIAEEGYTSPTPIQAKSIPAVLKGGDLLAAAQTGTGKTAGFTLPIL 60

Query: 61  TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L   K  +  R+ R LIL PTRELAAQV ++   YGK   L   ++ GG+    Q K 
Sbjct: 61  QRLSSIKASSGKRVLRVLILTPTRELAAQVQESVVTYGKYTGLKSTVIFGGVGANPQIKA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +  G D+L+ TPGR+LD  ++  + +N+IEILV+DEADRMLDMGF+  I+ I + +P  R
Sbjct: 121 IAAGLDILVATPGRLLDLMSQKCVSLNDIEILVLDEADRMLDMGFLRDIKKILAALPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT + E++ +++  L  P+ IEV   +S  E I           ++K  LL  L
Sbjct: 181 QNLLFSATFSTEIKALADGLLNKPELIEVARSNSANEAIAQLI--HPVDRNQKHPLLAHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++S D  K  ++F   K     L   LEK G +  AIHGN  Q +R K L++FK G +  
Sbjct: 239 IKSND-WKQVLVFTRTKHGANKLVTQLEKDGITSMAIHGNKSQTARTKALADFKAGKLTA 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV N+D+PN +E+Y+HRIGRTGRAG +G A +LV  ++ + + 
Sbjct: 298 LVATDIAARGIDIDQLPHVVNYDLPNVSEDYVHRIGRTGRAGSNGVAVSLVCVDEHQMLR 357

Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            IEKLI++K+  + + G     N   + I +    H +   P    S G   +K
Sbjct: 358 DIEKLIKQKLPQEVIAGFEPDPNAIAQPIQLRSQQHQQSRRPKVAGSGGAPAKK 411


>gi|56414080|ref|YP_151155.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|167550495|ref|ZP_02344252.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|168240684|ref|ZP_02665616.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168263681|ref|ZP_02685654.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168466416|ref|ZP_02700278.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|194451116|ref|YP_002044848.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197363003|ref|YP_002142640.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198243732|ref|YP_002214783.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|207856257|ref|YP_002242908.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|56128337|gb|AAV77843.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|194409420|gb|ACF69639.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|195631083|gb|EDX49669.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197094480|emb|CAR59997.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|197938248|gb|ACH75581.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205324518|gb|EDZ12357.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205339744|gb|EDZ26508.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205347690|gb|EDZ34321.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206708060|emb|CAR32351.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|322616296|gb|EFY13205.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619546|gb|EFY16421.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622758|gb|EFY19603.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628670|gb|EFY25457.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631607|gb|EFY28363.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637134|gb|EFY33837.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641666|gb|EFY38302.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644539|gb|EFY41079.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322654208|gb|EFY50531.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658123|gb|EFY54390.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663597|gb|EFY59799.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322670333|gb|EFY66473.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671569|gb|EFY67691.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676925|gb|EFY72992.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682850|gb|EFY78869.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686529|gb|EFY82511.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194574|gb|EFZ79767.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199095|gb|EFZ84191.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202050|gb|EFZ87109.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208924|gb|EFZ93861.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213909|gb|EFZ98679.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215239|gb|EFZ99984.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220842|gb|EGA05280.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227299|gb|EGA11467.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229917|gb|EGA14040.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233142|gb|EGA17238.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240877|gb|EGA24919.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243194|gb|EGA27214.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248733|gb|EGA32661.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251737|gb|EGA35604.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323261448|gb|EGA45029.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267879|gb|EGA51358.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|326622538|gb|EGE28883.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 453

 Score =  309 bits (791), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 163/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q++  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|16759741|ref|NP_455358.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29142486|ref|NP_805828.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213163843|ref|ZP_03349553.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213424785|ref|ZP_03357535.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213854569|ref|ZP_03382809.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|25385229|pir||AI0599 probable ATP-dependent RNA helicase rhlE STY0855 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16502034|emb|CAD05267.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29138117|gb|AAO69688.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 455

 Score =  309 bits (791), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 163/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q++  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|78049289|ref|YP_365464.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325928526|ref|ZP_08189714.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
 gi|78037719|emb|CAJ25464.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325541065|gb|EGD12619.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
          Length = 462

 Score =  309 bits (791), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 165/373 (44%), Positives = 236/373 (63%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PTPIQ + IPLVL  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      V   R PR LIL PTRELA QV D+   Y K   +  A++ GG+    Q  
Sbjct: 61  QHLGTAPQTVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+LI  PGR++DH  R  + ++ IE+L++DEADRMLDMGF+P I+ I + +P  
Sbjct: 121 ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT  + +++++  F++NP +I+V   ++ AE+I H         ++K  LL 
Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDG--ARKRDLLL 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL +QD+ +  ++F   K     L   LEK G    AIHGN  Q  RM+ LS+FK G +
Sbjct: 239 HLL-AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LVA+++ K 
Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357

Query: 357 IDAIEKLIEKKVD 369
           +  I +++ + V+
Sbjct: 358 LRQIVRMLGRDVE 370


>gi|238913888|ref|ZP_04657725.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 455

 Score =  309 bits (791), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 163/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q++  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|294625538|ref|ZP_06704165.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294663958|ref|ZP_06729380.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292600152|gb|EFF44262.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292606274|gb|EFF49503.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 460

 Score =  309 bits (791), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 165/373 (44%), Positives = 236/373 (63%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PTPIQ + IPLVL  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      V   R PR LIL PTRELA QV D+   Y K   +  A++ GG+    Q  
Sbjct: 61  QHLGTAPQTVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+LI  PGR++DH  R  + ++ IE+L++DEADRMLDMGF+P I+ I + +P  
Sbjct: 121 ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT  + +++++  F++NP +I+V   ++ AE+I H         ++K  LL 
Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDG--ARKRDLLL 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL +QD+ +  ++F   K     L   LEK G    AIHGN  Q  RM+ LS+FK G +
Sbjct: 239 HLL-AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LVA+++ K 
Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357

Query: 357 IDAIEKLIEKKVD 369
           +  I +++ + V+
Sbjct: 358 LRQIVRMLGRDVE 370


>gi|257093622|ref|YP_003167263.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046146|gb|ACV35334.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 491

 Score =  309 bits (791), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 167/376 (44%), Positives = 244/376 (64%), Gaps = 8/376 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL+P ++ A+ D GY +PTPIQ + IP+VL   D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MRFDDLGLAPDLLRAIADQGYAEPTPIQAQAIPIVLAGQDLMGGAQTGTGKTAAFTLPLL 60

Query: 61  T-ILEKGRARV---RMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             IL    A +   R P R L+L PTRELA QV ++   Y K   L  A + GG+  + Q
Sbjct: 61  QRILPFASASLSPARHPVRVLMLAPTRELAIQVHESVRGYSKYVPLRSACVYGGVDIKPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             ++  G +VL+ TPGR+LD   +  L   +++ LV+DEADRMLDMGFIP +  I +L+P
Sbjct: 121 IAEIRLGVEVLVATPGRLLDLIEQRCLNFGSVQALVLDEADRMLDMGFIPDVTRIINLLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ+LLFSAT ++E++K+++  L++P  IEV   ++ +ETI H      A+   K ALL
Sbjct: 181 QQRQSLLFSATFSEEIKKLADRMLKSPVLIEVARRNTVSETITHRVHPVAAE--AKRALL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +LL+S D     ++F   K     L   L++ G +  +IHG+  Q+ R+K L  FK+G+
Sbjct: 239 VKLLRSSD-FNQVLVFTRTKIETNKLARELQRAGIAADSIHGDKSQQERLKALEAFKDGS 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGLDI ++ HV NF++P   E+YIHRIGRTGRAG+ G A +LV+  ++ 
Sbjct: 298 VLVLVATDVAARGLDIDELPHVINFELPRTPEDYIHRIGRTGRAGKPGTAVSLVSASEVP 357

Query: 356 HIDAIEKLIEKKVDWL 371
           ++  IEKLI  +V+ +
Sbjct: 358 YLVDIEKLIRIQVEQI 373


>gi|197247942|ref|YP_002145775.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197211645|gb|ACH49042.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 453

 Score =  309 bits (791), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 163/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q++  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|16764183|ref|NP_459798.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167992052|ref|ZP_02573150.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|16419327|gb|AAL19757.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|205329602|gb|EDZ16366.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261246078|emb|CBG23880.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267992563|gb|ACY87448.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157405|emb|CBW16894.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312911844|dbj|BAJ35818.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321226393|gb|EFX51444.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129127|gb|ADX16557.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332987751|gb|AEF06734.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 454

 Score =  309 bits (791), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 163/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q++  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|300311049|ref|YP_003775141.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300073834|gb|ADJ63233.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 520

 Score =  309 bits (791), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 163/372 (43%), Positives = 234/372 (62%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS ++V AV + GY  PTPIQ + +P VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 61  ---TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
              + + + +    +P R LIL PTRELAAQV ++  +YGK   LT A + GG+    Q 
Sbjct: 61  QRLSAMPRQKINGHVPIRALILAPTRELAAQVEESVRQYGKYLPLTSACIFGGVGINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+L+ TPGR+LDH  +G + + +I+ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 TLLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAALPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT  DE++K++++ L NP  IEV   +ST E I            KK  +L 
Sbjct: 181 KRQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPV--DRDKKHPMLA 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L+++    K  ++F   K     L   L + G +  AIHGN  Q +R K L+ FK+G +
Sbjct: 239 HLIKTHQ-WKQVLVFTRTKHGANKLVEQLGRDGITAMAIHGNKSQSARTKALAEFKDGKL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             ++A+D+AARG+DI  + HV N+D+PN  E+Y+HRIGRTGRAG  G+A +LV  ++   
Sbjct: 298 TALIATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCIDERDL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+ I++++
Sbjct: 358 LHDIERFIKREI 369


>gi|285019480|ref|YP_003377191.1| ATP-dependent RNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283474698|emb|CBA17197.1| probable atp-dependent rna helicase protein [Xanthomonas
           albilineans]
          Length = 456

 Score =  308 bits (790), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 165/374 (44%), Positives = 232/374 (62%), Gaps = 8/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PTPIQ + IP+ LQ HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTPIQSQAIPVALQGHDLMAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L      V    R PR LIL PTRELA QV D+   Y K   +  A + GG+    Q 
Sbjct: 61  QHLGTSAQTVGSGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSATIYGGVGMGNQL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L RG D+LI  PGR+LDH  R  + ++ IEILV+DEADRMLDMGF+P I+ I + +P 
Sbjct: 121 DALRRGVDLLIACPGRLLDHLERRSVDLSGIEILVLDEADRMLDMGFLPSIKRILTKLPK 180

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT  + +++++  F+ NP+ I+    ++ A+TI H         ++K  LL
Sbjct: 181 QNRQTLLFSATFEEGIKQLAREFMHNPQEIQATPSNTVADTITHRVHPVDG--ARKRELL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL + D+ K  ++F   K     L   L+K G    AIHGN  Q  R++ L +FK   
Sbjct: 239 LHLLAA-DSRKQTLVFARTKHGADKLTTFLDKSGIKAAAIHGNKSQGQRLRALGDFKASR 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LVA+++ K
Sbjct: 298 ITVLVATDIAARGIDIDQLPQVINYDLPMVAEDYVHRIGRTGRNGAQGEAVSLVAQDEAK 357

Query: 356 HIDAIEKLIEKKVD 369
            + AI +L+++ +D
Sbjct: 358 LLRAIARLLKRDMD 371


>gi|167561646|ref|ZP_02354562.1| putative ATP-dependent RNA helicase rhlE [Burkholderia oklahomensis
           EO147]
          Length = 395

 Score =  308 bits (790), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 162/372 (43%), Positives = 235/372 (63%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTFYAENRGARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPK 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAET+            +K  LL 
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETVAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|78186849|ref|YP_374892.1| DEAD/DEAH box helicase-like [Chlorobium luteolum DSM 273]
 gi|78166751|gb|ABB23849.1| DEAD/DEAH box helicase-like protein [Chlorobium luteolum DSM 273]
          Length = 418

 Score =  308 bits (790), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 170/406 (41%), Positives = 248/406 (61%), Gaps = 11/406 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L +   ++ A+ + GY  PTPIQ + IPL+L+  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MKFSSLHIIEPILRALEEEGYTHPTPIQTEAIPLILKGSDLLGCAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L + +A    R  R+LI+ PTRELA Q+ ++F  YG++  LT  ++ GG+    Q   
Sbjct: 61  QLLRERKAIDGKRKIRSLIVTPTRELAIQIGESFSAYGRHTGLTNTVIFGGVGQNPQVNA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+LD  N+G L +++IEILV+DEADRMLDMGFI  I+ I + VP  R
Sbjct: 121 LRRGVDILVATPGRLLDLMNQGILHLHDIEILVLDEADRMLDMGFIHDIRKILAAVPKER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+Q++S   L++P ++ V   SST + I       +     K  LL  L
Sbjct: 181 QSLFFSATMPPEIQRLSSTILRHPAKVSVTPVSSTVDIINQQIY--FVDRGNKSGLLVHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ+ D ++  ++F   K     +   LEK   +  AIHGN  Q +R + LSNFK    ++
Sbjct: 239 LQNPD-IRTVLVFTRTKHGADKVVRHLEKHNITAEAIHGNKAQNARQRALSNFKSQKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+  V N+++ N AE Y+HRIGRTGRAG  G A +    E+ +++ 
Sbjct: 298 LVATDIAARGIDVDDLEWVINYEMSNIAETYVHRIGRTGRAGSAGTAISFCDAEEKEYLR 357

Query: 359 AIEKLIEKKVDWLNGD---LSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            IEKLI K +  ++     L   NP   KI I +    R  +P P+
Sbjct: 358 DIEKLIAKSIPVVDSHPFPLMDHNP--VKI-IKEQGRGRSGHPAPR 400


>gi|311109370|ref|YP_003982223.1| DEAD/DEAH box helicase family protein [Achromobacter xylosoxidans
           A8]
 gi|310764059|gb|ADP19508.1| DEAD/DEAH box helicase family protein [Achromobacter xylosoxidans
           A8]
          Length = 590

 Score =  308 bits (790), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 158/377 (41%), Positives = 231/377 (61%), Gaps = 18/377 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+P ++ AV +AG+  PTP+Q   IP  L  HD+   +QTG+GKTA+F+LP L
Sbjct: 1   MSFENLGLAPALLSAVQEAGFSTPTPVQASAIPQALAGHDLMVSSQTGSGKTAAFMLPAL 60

Query: 61  TILEKGRARVRMP-------RTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPF 112
             +       +MP       + L+L PTRELA QV D    YG+   +L  A ++GG+P+
Sbjct: 61  HRI------AQMPANKGVGVQVLVLTPTRELALQVTDATATYGRKLADLRTATVVGGMPY 114

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
            AQ K L R  DVL+ TPGR++DH N G++ +N +  LV+DEADRMLDMGFI  I+ I  
Sbjct: 115 GAQLKALSRRVDVLVATPGRLIDHLNSGRVKLNTVHTLVLDEADRMLDMGFIEDIETIVG 174

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKK 231
            +P  RQTLLFSAT+   + K++   +++P+RIE+         I    +  YA   S K
Sbjct: 175 RLPEDRQTLLFSATLDGTIAKLAARMMRDPQRIEMAGAKEKHTNITQSLL--YADDASHK 232

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL  +L+    +   I+F + K+   +L   L  QGF+  A+HG+++QR R + LS  
Sbjct: 233 MQLLDHVLRDA-ALDQAIVFTSTKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLSQL 291

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G ++++VA+D+AARG+D+  + H  NFD+P +AE+Y+HRIGRTGRAGR G AFTL   
Sbjct: 292 QRGQLRILVATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRTGRAGRSGLAFTLATH 351

Query: 352 EDIKHIDAIEKLIEKKV 368
            +   +  IE  I + +
Sbjct: 352 SERHKVRRIEHYIGQSI 368


>gi|319762158|ref|YP_004126095.1| dead/deah box helicase domain protein [Alicycliphilus denitrificans
           BC]
 gi|317116719|gb|ADU99207.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           BC]
          Length = 564

 Score =  308 bits (790), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 157/373 (42%), Positives = 238/373 (63%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AV + GY  PTPIQ + IP VL  HD+   AQTGTGKTA+F LPML
Sbjct: 1   MTFEELKLAPAILQAVQEQGYQNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARV-----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L +G+A       R  R L+L PTRELAAQV ++   YGK+ ++   ++ GG+    Q
Sbjct: 61  HRLAQGQAPTSRFGGRGVRALVLTPTRELAAQVEESVRTYGKHLDIKSTVIFGGVGMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++++RG DVL+ TPGR+LD   +G + ++ +EILV+DEADRMLDMGFI  ++ + +L+P
Sbjct: 121 IERIKRGVDVLVATPGRLLDLQQQGFIDLSQVEILVLDEADRMLDMGFIHDVKKVLALLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE+++++   L +P+ I+V   ++T + I    V       KK  +L
Sbjct: 181 KAKQSLLFSATFSDEIRELAAGLLNDPQSIQVTPRNTTVQRISQ--VIHPVGRGKKKQVL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             ++Q  D     ++F   K    N+   L K G    A+HGN  Q +R + L  FK G 
Sbjct: 239 LHIIQEHD-WSQVLVFTRTKFGANNVAEYLTKHGVQAMALHGNKSQSARTQALEGFKSGQ 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ +VA+D+AARG+DI D+ HV N+++PN  E+Y+HRIGRTGRAG+ G+A +LV  ++  
Sbjct: 298 IRALVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGKEGQAVSLVCMDEEG 357

Query: 356 HIDAIEKLIEKKV 368
            +  IE+  ++++
Sbjct: 358 FMMEIERFTKQEI 370


>gi|154492527|ref|ZP_02032153.1| hypothetical protein PARMER_02161 [Parabacteroides merdae ATCC
           43184]
 gi|154087752|gb|EDN86797.1| hypothetical protein PARMER_02161 [Parabacteroides merdae ATCC
           43184]
          Length = 419

 Score =  308 bits (790), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 158/377 (41%), Positives = 240/377 (63%), Gaps = 5/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L   +  A+    Y  PTPIQ + IP+VL   D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFEQLELIEPIRKALKKEKYTTPTPIQAEAIPVVLDGSDLLGCAQTGTGKTAAFSIPII 60

Query: 61  TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +E+  +R R P  + LIL PTRELA Q+ ++F  YG+  ++   ++ GG+  + Q   
Sbjct: 61  QKIEERISRGRKPGIKALILTPTRELAIQIGESFTAYGRYTHVKHTVIFGGVGQKPQTDA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG DVLI TPGR+LD  N+G + ++ +E  V+DEADRMLDMGFI  I+ I  L+P  R
Sbjct: 121 LERGVDVLIATPGRLLDLINQGFIRLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+++++   L  P+++EV   SST +TI+      + +  +K  LL+ L
Sbjct: 181 QSLFFSATMPPEIERLAGTILHEPEKVEVTPVSSTVDTIDQS--VYFVEKVEKINLLKNL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ + ++++ ++F   K     +   L K G    AIHGN  Q +R + LS+FK+ T+++
Sbjct: 239 LEDR-SLESVLVFTRTKHGADKVARVLNKSGIGAEAIHGNKGQSARQRALSSFKDHTLRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RG+D+  + HV N+D+PN  E Y+HRIGRTGRAGR G AF+    E++ ++ 
Sbjct: 298 LIATDIASRGIDVDHLSHVINYDLPNVPETYVHRIGRTGRAGRSGIAFSFCDVEEVPYLK 357

Query: 359 AIEKLIEKKVDWLNGDL 375
            I+KLI K+V    G +
Sbjct: 358 DIQKLIGKEVPVAGGHM 374


>gi|237730773|ref|ZP_04561254.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2]
 gi|226906312|gb|EEH92230.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2]
          Length = 448

 Score =  308 bits (790), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 163/372 (43%), Positives = 237/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P+++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPEILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +   + R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITNQPHGKSRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVLI TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLIATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPTK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ +E + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKSLAEKLLHNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q++  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|146310946|ref|YP_001176020.1| ATP-dependent RNA helicase RhlE [Enterobacter sp. 638]
 gi|145317822|gb|ABP59969.1| DEAD/DEAH box helicase domain protein [Enterobacter sp. 638]
          Length = 462

 Score =  308 bits (790), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 159/371 (42%), Positives = 239/371 (64%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P+++ AV + GY++PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDTLGLNPEILRAVAEQGYLEPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TIL--EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L   +  A+ R P R LIL PTRELAAQ+ +N  +Y +  ++   ++ GG+    Q  
Sbjct: 61  QRLVQNEPHAKGRRPVRALILTPTRELAAQIGENVREYSRYLDIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRSGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++E  L+NP  IEV   ++ +E +       +    +K  LL Q
Sbjct: 181 RQNLLFSATFSDEIKGLAEKLLRNPLEIEVARRNTASEQVSQYV--HFVDKKRKRELLSQ 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 239 MI-GEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKV 368
             IE+L++K++
Sbjct: 358 HDIERLLKKEI 368


>gi|300715940|ref|YP_003740743.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
 gi|299061776|emb|CAX58892.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
          Length = 480

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 162/375 (43%), Positives = 238/375 (63%), Gaps = 14/375 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVAEQGYDEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPVL 60

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L       KGR   R  R LIL PTRELAAQ+ +N + Y K  +L   ++ GG+    
Sbjct: 61  QLLSSHNPHPKGR---RPVRALILTPTRELAAQIGENVQDYSKYLDLRSLVVFGGVSINP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G DVL+ TPGR+LD  ++  L ++ +EILV+DEADRMLDMGFI  I+ + + +
Sbjct: 118 QMMKLRSGVDVLVATPGRLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCA 233
           P  RQ LLFSAT +DE++ ++E  L NP+ + V   ++ +E I +H  +       K+  
Sbjct: 178 PAKRQNLLFSATFSDEIKGLAEKLLHNPEEVSVARRNTASEQITQHVHMVD----KKRKR 233

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L   L  +D  +  ++F   K    +L   L K G +  AIHGN  Q +R + LS+FKE
Sbjct: 234 ELLSFLIGRDNWQQVLVFTRTKHGANHLAEQLNKDGITSAAIHGNKSQGARTRALSDFKE 293

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I+++VA+D+AARG+DI ++ HV NF++PN  E+Y+HRIGRTGRA   G+A +LV  ++
Sbjct: 294 GKIRVLVATDIAARGIDISELPHVVNFELPNVPEDYVHRIGRTGRAAATGEALSLVCVDE 353

Query: 354 IKHIDAIEKLIEKKV 368
           +K +  IE+++++++
Sbjct: 354 LKLLRDIERVLKREI 368


>gi|254237339|ref|ZP_04930662.1| hypothetical protein PACG_03411 [Pseudomonas aeruginosa C3719]
 gi|126169270|gb|EAZ54781.1| hypothetical protein PACG_03411 [Pseudomonas aeruginosa C3719]
          Length = 639

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 168/396 (42%), Positives = 241/396 (60%), Gaps = 12/396 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV  AGY +PT +Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFSSLGLSEALARAVEAAGYSQPTRVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L        + R   R  R L+L PTRELAAQV D+F+ Y ++  L    + GG+   
Sbjct: 61  ERLFPAGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L +G DVL+  PGR+LD   + K+ ++++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQIQALAKGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A   +K A
Sbjct: 181 LPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPA--PQKRA 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ +    +  ++F   K     L   L K G    AIHGN  Q +R K L++FK 
Sbjct: 239 LLAHLV-TVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             ++++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
            K + AIEK+  +++   +GD    +P     ++AQ
Sbjct: 358 EKLLKAIEKMTRQRIP--DGDAQGFDPEAVLPEVAQ 391


>gi|21244335|ref|NP_643917.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109989|gb|AAM38453.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 460

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 165/373 (44%), Positives = 236/373 (63%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PTPIQ + IPLVL  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      V   R PR LIL PTRELA QV D+   Y K   +  A++ GG+    Q  
Sbjct: 61  QHLGTAPQTVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+LI  PGR++DH  R  + ++ IE+L++DEADRMLDMGF+P I+ I + +P  
Sbjct: 121 ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT  + +++++  F++NP +I+V   ++ AE+I H         ++K  LL 
Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPVQIQVTPSNTVAESITHRVHPVDG--ARKRDLLL 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL +QD+ +  ++F   K     L   LEK G    AIHGN  Q  RM+ LS+FK G +
Sbjct: 239 HLL-AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LVA+++ K 
Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357

Query: 357 IDAIEKLIEKKVD 369
           +  I +++ + V+
Sbjct: 358 LRQIVRMLGRDVE 370


>gi|311280327|ref|YP_003942558.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308749522|gb|ADO49274.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
          Length = 446

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 241/372 (64%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P+++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDTLGLNPEILRAVAEQGYREPTPIQKQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGR--ARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L +    A+ R P R LIL PTRELAAQV +N  +Y K  N+   ++ GG+    Q  
Sbjct: 61  QRLVQNEPHAKGRRPIRALILTPTRELAAQVGENVREYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  L ++++E+LV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNALKLDSVEVLVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 QMI-GEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IE+L++K++
Sbjct: 357 LRDIERLLKKEI 368


>gi|283833909|ref|ZP_06353650.1| ATP-dependent RNA helicase RhlE [Citrobacter youngae ATCC 29220]
 gi|291070581|gb|EFE08690.1| ATP-dependent RNA helicase RhlE [Citrobacter youngae ATCC 29220]
          Length = 447

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 162/372 (43%), Positives = 237/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              +  +   + R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLVTHQPHGKSRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVLI TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLIATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKSLAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q++  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|330826029|ref|YP_004389332.1| DEAD/DEAH box helicase domain-containing protein [Alicycliphilus
           denitrificans K601]
 gi|329311401|gb|AEB85816.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           K601]
          Length = 568

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 157/373 (42%), Positives = 238/373 (63%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AV + GY  PTPIQ + IP VL  HD+   AQTGTGKTA+F LPML
Sbjct: 1   MTFEELKLAPALLQAVQEQGYQNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARV-----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L +G+A       R  R L+L PTRELAAQV ++   YGK+ ++   ++ GG+    Q
Sbjct: 61  HRLAQGQAPTSRFGGRGVRALVLTPTRELAAQVEESVRAYGKHLDIKSTVIFGGVGMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++++RG DVL+ TPGR+LD   +G + ++ +EILV+DEADRMLDMGFI  ++ + +L+P
Sbjct: 121 IERIKRGVDVLVATPGRLLDLQQQGFMDLSQVEILVLDEADRMLDMGFIHDVKKVLALLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE+++++   L +P+ I+V   ++T + I    V       KK  +L
Sbjct: 181 KAKQSLLFSATFSDEIRELAAGLLNDPQSIQVTPRNTTVQRISQ--VIHPVGRGKKKQVL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             ++Q  D     ++F   K    N+   L K G    A+HGN  Q +R + L  FK G 
Sbjct: 239 LHIIQQHD-WSQVLVFTRTKFGANNVAEYLTKHGVQAMALHGNKSQSARTQALEGFKSGQ 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ +VA+D+AARG+DI D+ HV N+++PN  E+Y+HRIGRTGRAG+ G+A +LV  ++  
Sbjct: 298 IRALVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGKEGQAVSLVCMDEEG 357

Query: 356 HIDAIEKLIEKKV 368
            +  IE+  ++++
Sbjct: 358 FMMEIERFTKQEI 370


>gi|62179387|ref|YP_215804.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62127020|gb|AAX64723.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322713858|gb|EFZ05429.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 453

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 163/371 (43%), Positives = 237/371 (63%), Gaps = 8/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q++  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKK 367
           +  IEKL++K+
Sbjct: 357 LRDIEKLLKKE 367


>gi|323268735|gb|EGA52195.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 404

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 163/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q++  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|204929853|ref|ZP_03220874.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204320847|gb|EDZ06048.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 453

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 163/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQLHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q++  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|209695626|ref|YP_002263555.1| putative ATP-dependent RNA helicase [Aliivibrio salmonicida
           LFI1238]
 gi|208009578|emb|CAQ79874.1| putative ATP-dependent RNA helicase [Aliivibrio salmonicida
           LFI1238]
          Length = 398

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 157/364 (43%), Positives = 231/364 (63%), Gaps = 5/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+ + GY  PTPIQ K IP+ L   ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSNLGLSNPILKAINELGYKAPTPIQEKAIPVALTGKNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L  E+ + R +  R LIL PTRELA QV DN  KY K+ +LT   + GG+ ++ Q ++
Sbjct: 61  QMLSEEQTKVRAKRIRALILTPTRELAVQVEDNISKYSKHLDLTSLAMYGGVDYKEQKQR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+L+ TPGR+LD + +  +  + I+ILV+DEADRMLDMGFI  I  I   +P  R
Sbjct: 121 LIEGVDILVATPGRLLDMYTQRAVHFDEIDILVLDEADRMLDMGFIEDINKIIERLPLER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT++++++ ++   + NP  I +   S+    I+   +       KK AL+  L
Sbjct: 181 QNLLFSATLSEQVRALARTAINNPIEITIERNSNAEPKIDQWLITV--DKDKKSALISHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++  D     +IF   K     L   LEK+G +  A H    Q +R K+L++FKEG ++ 
Sbjct: 239 IKEND-WDQALIFIETKHGAAKLVGQLEKRGITAEAFHSGRSQDARSKVLNDFKEGRLKY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+ +AARG+DI ++  V N+D+P  AE+Y+HRIGRTGRAG  G+A + V+++D K++ 
Sbjct: 298 LVATGIAARGIDIDELTRVINYDLPFPAEDYVHRIGRTGRAGSSGEAISFVSRDDFKNLC 357

Query: 359 AIEK 362
            IEK
Sbjct: 358 MIEK 361


>gi|289208213|ref|YP_003460279.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix]
 gi|288943844|gb|ADC71543.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix]
          Length = 441

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 162/375 (43%), Positives = 231/375 (61%), Gaps = 6/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  ++ A+  AGY  PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L  
Sbjct: 7   FADLGLAESLLRALDQAGYKTPTPIQAQAIPEVLKGGDLLAAAQTGTGKTAGFTLPILQR 66

Query: 63  LEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  G+   R    PR LIL PTRELAAQV D+   YG++ +L    + GG+    Q K L
Sbjct: 67  LTTGQTPERKPGRPRALILTPTRELAAQVHDSVRTYGRHLSLKSMTIFGGVNMNPQIKAL 126

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ +  L+P  RQ
Sbjct: 127 RGPMDIVVATPGRLLDHAGQKTIDLSGVEILVLDEADRMLDMGFIRDIRRLIGLMPKQRQ 186

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT + E++ ++ + L  P  ++V   ++ AET++        + S+K  LL  L+
Sbjct: 187 NLMFSATFSGEIRTLASSLLNKPAEVDVAPRNTAAETVQQTV--HLVESSRKRELLSHLI 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +S D     ++F   K     L   L + G    AIHGN  Q +R K L  FK G + ++
Sbjct: 245 RSND-WGQVLVFTRTKHGANRLAQKLTQDGVPSEAIHGNKSQAARTKALKQFKTGAVPVL 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV  E++K +  
Sbjct: 304 VATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSVGAALSLVDGEEMKLLKG 363

Query: 360 IEKLIEKKVDWLNGD 374
           IE+LI++ ++ +  D
Sbjct: 364 IERLIQRPIERIETD 378


>gi|167568882|ref|ZP_02361756.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786]
          Length = 408

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 162/372 (43%), Positives = 235/372 (63%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTFYAENRGARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPK 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAET+            +K  LL 
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETVAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|187925284|ref|YP_001896926.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
 gi|187716478|gb|ACD17702.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 515

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 166/373 (44%), Positives = 231/373 (61%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRARV-----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L    A       R  R LIL PTRELAAQV ++   YGK   L   ++ GG+    Q
Sbjct: 61  QRLNTMPAVTTGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G D+++ TPGR+LDH  +  + ++++EILV+DEADRMLDMGFI  I+ + + +P
Sbjct: 121 IGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT +DE++ +++N L +P  IEV   ++TAET+            KK  LL
Sbjct: 181 PKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPV--DRDKKRELL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++  +  +  ++F   K     L   L K   S  AIHGN  Q +R + L+ FK+GT
Sbjct: 239 THLIKQHNWFQV-LVFTRTKHGANRLAEQLTKDSISALAIHGNKSQSARTRALAEFKDGT 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARG+DI  + HV N+D+PN  E+Y+HRIGRTGRAG  G+A +LV  ++++
Sbjct: 298 LQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAISLVCVDELQ 357

Query: 356 HIDAIEKLIEKKV 368
            +  IEKLI++ V
Sbjct: 358 LLKDIEKLIKRPV 370


>gi|294338780|emb|CAZ87114.1| ATP-dependent RNA helicase [Thiomonas sp. 3As]
          Length = 533

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 155/374 (41%), Positives = 240/374 (64%), Gaps = 10/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL   +V AV + GY  PTPIQ++ IP+VL  HD+   AQTGTGKTA F LPML
Sbjct: 1   MSFQDLGLIEPLVRAVAEQGYTVPTPIQLQAIPVVLAGHDLLAAAQTGTGKTAGFTLPML 60

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L  G      + ++ +PR LIL PTRELAAQV +N   YG++  L    + GG+  + 
Sbjct: 61  QRLSGGEPARNAKGKI-IPRALILTPTRELAAQVHENLAAYGRHLKLHSMAMYGGVGMQP 119

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L RG D+++ TPGR+LDH ++  + ++ +++LV+DEADRMLDMGF+  ++ I +L+
Sbjct: 120 QINALARGMDIVVATPGRLLDHQSQRNIDLSAVQMLVLDEADRMLDMGFVHDMRRIVALL 179

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT ++E+++++ +FL NP+++ V   ++TA+ +E           +K  +
Sbjct: 180 PKQRQNLLFSATFSEEIKRLAGDFLVNPQQVAVARQNATADLVEQIVFPV--DRERKRDM 237

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L++ ++  +  ++F   K     L   L+K G      HGN  Q +R++ L++FK G
Sbjct: 238 LVHLIRERNWPQT-LVFTRTKHGANRLAEQLDKDGIVATGFHGNKTQSARLRALADFKSG 296

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            +Q++VA+D+AARG+DI  +  V N+++PN  E+Y+HRIGRTGRAG +G+A +LV  +++
Sbjct: 297 KLQVLVATDIAARGIDIDQLPVVVNYELPNIPEDYVHRIGRTGRAGSNGQAISLVCVDEL 356

Query: 355 KHIDAIEKLIEKKV 368
             +  IEKL+   +
Sbjct: 357 GFLRDIEKLVRNPI 370


>gi|213620634|ref|ZP_03373417.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 402

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 163/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q++  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|319783363|ref|YP_004142839.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169251|gb|ADV12789.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 474

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 161/387 (41%), Positives = 245/387 (63%), Gaps = 8/387 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA LG++  ++ A  +AG+ +P PIQ + IP  ++  D+ GIAQTG+GKTA+F LP+L+ 
Sbjct: 18  FAALGITGALLKATHNAGFTEPKPIQAQAIPPQMEGRDIFGIAQTGSGKTAAFALPILSK 77

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+ D  +   K  +++ AL++GG+   +Q KK+ 
Sbjct: 78  IIALGTKRRPKTARALILAPTRELAVQIEDTIKILAKGAHVSTALVLGGVSRFSQVKKVA 137

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+LI TPGR+ D    G L++ + + LV+DE DRMLDMGFI  ++ I       RQT
Sbjct: 138 PGVDILIATPGRLTDLVREGDLMLADTKWLVLDEGDRMLDMGFINDVKRIAKATAPDRQT 197

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM +E+ ++++  L+NP R+EV   S+ A  I    V  +A+  +K  +L  +L 
Sbjct: 198 VLFSATMPNEIAELAKGLLKNPIRVEVAPQSTAAAEIVQGVV--FARTKQKRQVLSTML- 254

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +TMK+ IIF   K     +   LE+ GF    IHGN  Q +R K L++F++G+++++V
Sbjct: 255 ADETMKSVIIFSRTKHGADRVTKDLERDGFKAAVIHGNKSQNARQKALNDFRDGSVRILV 314

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+P + HV NFD+P+ AE+Y+HRIGRTGR G  G A TL    +   +  +
Sbjct: 315 ATDIAARGIDVPGISHVVNFDLPDEAESYVHRIGRTGRNGMDGIAITLCDPSENSKLRQV 374

Query: 361 EKLIEKKVDWLNGDLSSLNP---PLEK 384
           E++I  K+  +   L S +P   P EK
Sbjct: 375 ERIIRTKLPIVADHLGSPDPLRNPAEK 401


>gi|299530317|ref|ZP_07043742.1| hypothetical protein CTS44_06063 [Comamonas testosteroni S44]
 gi|298721688|gb|EFI62620.1| hypothetical protein CTS44_06063 [Comamonas testosteroni S44]
          Length = 613

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 157/373 (42%), Positives = 242/373 (64%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AV + GY  PTPIQ + IPLVL  HD+   AQTGTGKTA+F LPML
Sbjct: 1   MTFEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L  G A       +  RTL+L PTRELAAQV +N   Y K  ++T  ++ GG+  + Q
Sbjct: 61  QRLASGAAPKNKFGGKGIRTLVLTPTRELAAQVEENLRGYAKYLDITSTVIFGGVGMKPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             ++E+G DVL+ TPGR+LD   +G + ++ +E+L++DEADRMLDMGFI  ++ + +LVP
Sbjct: 121 IARIEKGVDVLVATPGRLLDLAGQGFMDLSTVEMLILDEADRMLDMGFIHDVKKVLALVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE+++++   L+NP+ I+V   ++T + I+   +    +  KK  LL
Sbjct: 181 KDKQSLLFSATFSDEIRELANGLLRNPQSIQVTPRNTTVQRIKQV-IHPVGRGKKKQVLL 239

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             ++Q ++     ++F   K    N+   L K G S  A+HGN  Q +R + L  FK G 
Sbjct: 240 -HIIQ-ENNWSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGE 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VA+D+AARG+DI ++ +V N+++PN +E+Y+HRIGRTGRAGR G A +LV  ++  
Sbjct: 298 LRALVATDIAARGIDIDELPNVVNYEIPNISEDYVHRIGRTGRAGREGNAVSLVCMDEEG 357

Query: 356 HIDAIEKLIEKKV 368
            +  IE+  ++++
Sbjct: 358 FMMDIERFTKQEI 370


>gi|261415437|ref|YP_003249120.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371893|gb|ACX74638.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 486

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 181/443 (40%), Positives = 259/443 (58%), Gaps = 17/443 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  +  AV   GY  PTPIQ ++IP +L+  D+ GIAQTGTGKTA+F LP+L
Sbjct: 1   MKFEELPLANPLQRAVRAVGYETPTPIQERSIPSLLEGKDLLGIAQTGTGKTAAFALPIL 60

Query: 61  T-ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +L+ G+ R  +  R LIL PTRELA QV D F +Y +   ++ A + GG+    Q +K
Sbjct: 61  QRLLDSGKFRSPKTCRALILLPTRELAIQVEDCFREYAQFTAISTACIFGGVNDNPQKQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG DVL+ TPGR+LD   +  + +  +E  V+DEADRMLDMGFI  I+ + +++P  R
Sbjct: 121 LIRGVDVLVATPGRLLDLIGQKAISLKKLEFFVLDEADRMLDMGFIHDIRKVVAMLPQDR 180

Query: 179 QTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           Q L FSATM +E+ K++   L+ NP R+EV   S+  E I         +  +K ALL++
Sbjct: 181 QNLFFSATMPEEISKLAATILRPNPVRVEVAPQSTPIERIRQELYRIDKR--RKGALLKE 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL     MK  ++FC  K     +   LEK G    AIHGN  Q  R + L NFK   I+
Sbjct: 239 LLAEHPEMKKVLVFCRTKHGADKIVRVLEKAGIKCAAIHGNKSQNRRQEALGNFKCEQIR 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ DV HVFN+D+PN  E ++HRIGRT RAG+ G A +  + ++   +
Sbjct: 299 VLVATDIAARGIDVDDVSHVFNYDLPNEHETFVHRIGRTARAGKEGVAISFCSPDEESDL 358

Query: 358 DAIEKLIEKKVDWLNGDLS---SLNPPLEKI--DIAQHNHARKNNPIPQKSTGFDR---- 408
             IEKL   K+    GD S   +L PP ++    + +++  R +    Q      R    
Sbjct: 359 RGIEKLTRVKIP--EGDQSIYENLPPPQKETAESMMRNSRGRMSREEAQARAAETRNNRG 416

Query: 409 -RKKNYSSQKSHIPLKESEKISK 430
            RK N+  Q S+     SE+IS+
Sbjct: 417 NRKGNHGKQNSNNAPHNSEQISR 439


>gi|224582633|ref|YP_002636431.1| ATP-dependent RNA helicase rhlE [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224467160|gb|ACN44990.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 488

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 163/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q++  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|264677685|ref|YP_003277591.1| hypothetical protein CtCNB1_1549 [Comamonas testosteroni CNB-2]
 gi|262208197|gb|ACY32295.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 616

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 157/373 (42%), Positives = 242/373 (64%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AV + GY  PTPIQ + IPLVL  HD+   AQTGTGKTA+F LPML
Sbjct: 4   MTFEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPML 63

Query: 61  TILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L  G A       +  RTL+L PTRELAAQV +N   Y K  ++T  ++ GG+  + Q
Sbjct: 64  QRLASGTAPKNKFGGKGIRTLVLTPTRELAAQVEENLRGYAKYLDITSTVIFGGVGMKPQ 123

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             ++E+G DVL+ TPGR+LD   +G + ++ +E+L++DEADRMLDMGFI  ++ + +LVP
Sbjct: 124 IARIEKGVDVLVATPGRLLDLAGQGFMDLSTVEMLILDEADRMLDMGFIHDVKKVLALVP 183

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE+++++   L+NP+ I+V   ++T + I+   +    +  KK  LL
Sbjct: 184 KDKQSLLFSATFSDEIRELANGLLRNPQSIQVTPRNTTVQRIKQV-IHPVGRGKKKQVLL 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             ++Q ++     ++F   K    N+   L K G S  A+HGN  Q +R + L  FK G 
Sbjct: 243 -HIIQ-ENNWSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGE 300

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VA+D+AARG+DI ++ +V N+++PN +E+Y+HRIGRTGRAGR G A +LV  ++  
Sbjct: 301 LRALVATDIAARGIDIDELPNVVNYEIPNISEDYVHRIGRTGRAGREGNAVSLVCMDEEG 360

Query: 356 HIDAIEKLIEKKV 368
            +  IE+  ++++
Sbjct: 361 FMMDIERFTKQEI 373


>gi|158423990|ref|YP_001525282.1| helicase [Azorhizobium caulinodans ORS 571]
 gi|158330879|dbj|BAF88364.1| helicase [Azorhizobium caulinodans ORS 571]
          Length = 540

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 161/435 (37%), Positives = 256/435 (58%), Gaps = 11/435 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL+  +V A+ +  +V PTPIQ + IP +L   D+ GIAQTGTGKTA+F LP+L  
Sbjct: 4   FSELGLAEPIVRALTEEKHVTPTPIQAQAIPAILSGKDLIGIAQTGTGKTAAFGLPILDH 63

Query: 63  LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L +   R+  R  R LIL PTREL+ Q+ DN +K+G++  L+  L IGG+P   Q + L+
Sbjct: 64  LSRNPRRIEPRSCRVLILSPTRELSGQILDNLDKFGRHIRLSTTLAIGGVPMGRQIRALQ 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVL+ TPGR++D      L ++ +E+ V+DEAD+MLDMGF+  I+ I   +P  R +
Sbjct: 124 RGVDVLVATPGRLMDLVENNALKLDTVEVFVLDEADQMLDMGFVHAIKAIVRRLPHKRHS 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   +  ++ + L+NP  + V   + TA+ ++   +  + +   K  +L ++L 
Sbjct: 184 LFFSATMPSAIADLAASMLRNPVTVAVTPVAKTADRVDQRVI--FVEKPAKAKMLAEVLS 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++ +   ++F   K     +   L + G    AIHGN  Q  R ++L+ F+EG+++ +V
Sbjct: 242 TEE-VDRALVFTRTKHGADKVVQVLARAGHKAEAIHGNKSQNQRDRVLAAFREGSLRTLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV N+D+PN  E+Y+HRIGRT RAGR G A +    E+  ++ +I
Sbjct: 301 ATDIAARGIDVTGVSHVINYDLPNVPESYVHRIGRTARAGREGIAISFCDGEERAYLRSI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN-NPIPQKSTGFDRRKKNYSSQKSH 419
           EKLI  ++     D      P E  D    +  R N  P  ++    +RR+     +++ 
Sbjct: 361 EKLI--RMTLPTTDRRGEARPAEAADAVGEDRPRANAQPRGERQ---ERREPRGERKEAR 415

Query: 420 IPLKESEKISKLQQD 434
            P  E  +  ++Q D
Sbjct: 416 PPRAERPQGERVQGD 430


>gi|319944884|ref|ZP_08019146.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
 gi|319741454|gb|EFV93879.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
          Length = 489

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 158/369 (42%), Positives = 231/369 (62%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL+  ++ A+ D GY  PTPIQ K IP+VL   D+   AQTGTGKTA F LP+L  
Sbjct: 15  FSGLGLADPLLRALADVGYTNPTPIQAKAIPVVLTGRDLLAAAQTGTGKTAGFTLPILQR 74

Query: 63  LEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L     + R    PR LIL PTREL AQV ++ + Y K   +   L+ GG+    Q + L
Sbjct: 75  LLDNPMQTRKPGRPRCLILTPTRELTAQVEESVKAYAKYTRIRSVLIFGGVSINPQIQAL 134

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+L+ TPGR+LDH  +G + ++ +EI V+DEADRMLDMGFI  I+ + + +P  RQ
Sbjct: 135 RQPVDILVATPGRLLDHVQQGTVDLSGVEIFVLDEADRMLDMGFIHDIRRVIAKLPAKRQ 194

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++ ++   L NP  ++V   ++ +E +     A     ++K ALL  L+
Sbjct: 195 NLLFSATFSPEIRSLAHGLLDNPAEVDVAPRNTASELVAQS--AHLVPKTRKRALLSYLI 252

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+   K  ++F   K     L   L K G    AIHGN  Q +R + LS FK+G++ ++
Sbjct: 253 GSR-RWKQVLVFTKTKHGANRLAEQLGKDGIEAMAIHGNKSQGARTRALSRFKDGSLPVL 311

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRAG  G A +LV +E++K +  
Sbjct: 312 VATDIAARGLDIDELPHVVNYELPNVPEDYVHRIGRTGRAGHEGTAVSLVDREEMKLLTG 371

Query: 360 IEKLIEKKV 368
           IE+LI++++
Sbjct: 372 IERLIKRQI 380


>gi|91775611|ref|YP_545367.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|91709598|gb|ABE49526.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
          Length = 456

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 155/372 (41%), Positives = 233/372 (62%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L P ++ A+ +AGY  PTPIQ + IP VL+ HD+   AQTGTGKTA+F LP L
Sbjct: 1   MSFENLNLHPAILRALTEAGYSTPTPIQAQAIPEVLEGHDLMASAQTGTGKTAAFTLPAL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L     A+ R PR L+L PTRELAAQV +   KYGK        ++GG+P+  QNK L
Sbjct: 61  NLLATPHPAKSRGPRILVLTPTRELAAQVNEAARKYGKFLRARTVSIVGGMPYPLQNKLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+L+ TPGR+LDH  RG++ M+ +++L++DEADRMLDMGF+P I+ I+S +P  RQ
Sbjct: 121 SQPIDILVATPGRLLDHMERGRIDMSRLQMLILDEADRMLDMGFMPDIERISSALPSERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQ 237
           TL+FSAT   ++  +++  L+ PK I++         IE    FV   A  +K   LL+ 
Sbjct: 181 TLMFSATFEGQIANIAKTLLKTPKVIQIAAQKEKHANIEQKLLFVDDMAHKNK---LLEH 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL +   +   I+F + K++   L   L   G    A+HG++ Q +R + L+  + G ++
Sbjct: 238 LLIAPG-VNQAIVFTSTKRHADLLAEDLYAAGHKSAALHGDMTQGARNRTLTKLRHGDVR 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+  + HV N+D+P  AE+Y+HRIGRTGRAG  G A +  +  D   +
Sbjct: 297 VLVATDVAARGIDVQGITHVINYDLPKFAEDYVHRIGRTGRAGNTGVALSFASHMDRHQL 356

Query: 358 DAIEKLIEKKVD 369
             IE+   ++++
Sbjct: 357 RKIEQYTGQRLE 368


>gi|296134828|ref|YP_003642070.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
 gi|295794950|gb|ADG29740.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
          Length = 533

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 155/374 (41%), Positives = 240/374 (64%), Gaps = 10/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL   +V AV + GY  PTPIQ++ IP+VL  HD+   AQTGTGKTA F LPML
Sbjct: 1   MSFQDLGLIEPLVRAVAEQGYTVPTPIQLQAIPVVLAGHDLLAAAQTGTGKTAGFTLPML 60

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L  G      + ++ +PR LIL PTRELAAQV +N   YG++  L    + GG+  + 
Sbjct: 61  QRLSGGEPARNAKGKI-IPRALILTPTRELAAQVHENLAAYGRHLKLHSMAMYGGVGMQP 119

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L RG D+++ TPGR+LDH ++  + ++ +++LV+DEADRMLDMGF+  ++ I +L+
Sbjct: 120 QINALARGMDIVVATPGRLLDHQSQRNIDLSAVQMLVLDEADRMLDMGFVHDMRRIVALL 179

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT ++E+++++ +FL NP+++ V   ++TA+ +E           +K  +
Sbjct: 180 PKQRQNLLFSATFSEEIKRLAGDFLVNPQQVAVARQNATADLVEQIVFPV--DRERKRDM 237

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L++ ++  +  ++F   K     L   L+K G      HGN  Q +R++ L++FK G
Sbjct: 238 LVHLIRERNWPQT-LVFTRTKHGANRLAEQLDKDGIVATGFHGNKTQSARLRALADFKSG 296

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            +Q++VA+D+AARG+DI  +  V N+++PN  E+Y+HRIGRTGRAG +G+A +LV  +++
Sbjct: 297 KLQVLVATDIAARGIDIDQLPVVVNYELPNIPEDYVHRIGRTGRAGSNGQAISLVCVDEL 356

Query: 355 KHIDAIEKLIEKKV 368
             +  IEKL+   +
Sbjct: 357 GFLRDIEKLVRNPI 370


>gi|296121514|ref|YP_003629292.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
 gi|296013854|gb|ADG67093.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
          Length = 608

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 155/371 (41%), Positives = 238/371 (64%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +SP ++ AV  +GYV PTPIQ +TIPL+++  DV G+AQTGTGKTA+F +PML  
Sbjct: 14  FADLNISPPILSAVTASGYVNPTPIQARTIPLLIEGRDVLGMAQTGTGKTAAFAIPMLQA 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++   +  ++   LIL PTRELA QVA+ FEKY  N   L VA + GG  ++ Q ++L R
Sbjct: 74  IDLSSSATQV---LILAPTRELAMQVAEAFEKYAANLKGLRVAAIYGGQDYQLQFRQLNR 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  RG L +++++ LV+DEAD ML MGF   ++ I    P  RQ  
Sbjct: 131 GAHVIVGTPGRVMDHIRRGSLKLDSLKGLVLDEADEMLRMGFAEDVEWILEQTPSQRQIA 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++++++  L+NP  I +   ++TAETI   F+ T   + K+ A+L ++L++
Sbjct: 191 LFSATMPDSIRRIAQKHLKNPAEITIKRRTATAETIRQRFI-TVPPFQKE-AVLARILET 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + +   IIF   K   V L   L  QG+   A+  ++ Q  R +I+ + K G + +++A
Sbjct: 249 -EPIDAVIIFVKTKSTTVPLAEFLASQGYRTAALSSDVPQAQRERIVEHLKSGRLDIVIA 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV NFD+P+ +E+Y+HRIGRTGRAGR G     +   +   +  IE
Sbjct: 308 TDVAARGLDVQRITHVINFDLPSDSESYVHRIGRTGRAGRQGDTILFLHPRERFQLRRIE 367

Query: 362 KLIEKKVDWLN 372
           ++  + ++ + 
Sbjct: 368 QVTRQPIEPMQ 378


>gi|167041353|gb|ABZ06107.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
           HF4000_005I08]
          Length = 416

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 164/368 (44%), Positives = 229/368 (62%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L+  ++ A+ D GY  PTPIQ K+IP +L+  D+ G+AQTGTGKTA+F LP+L  
Sbjct: 4   FAGLDLAQPILRAIADEGYTTPTPIQGKSIPPLLEGRDLLGVAQTGTGKTAAFALPLLHR 63

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L    G++  R P  LIL PTRELA Q+ D+F  YG++  L   ++ GG+    Q + L 
Sbjct: 64  LADNAGKSHPRQPLALILAPTRELAGQIGDSFRTYGRHLRLRTGVVFGGVSIRRQIQTLA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  VL+ TPGR++D  NRG L ++ +E+ ++DEADRMLDMGFI  ++ IT+ +P  RQT
Sbjct: 124 RGVHVLVATPGRLIDLMNRGDLRLDAVEVFILDEADRMLDMGFIRDVKKITAALPKRRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +Q ++ + L NP R+E    S+T E ++   +  +    KK ALL +LL 
Sbjct: 184 LLFSATMPKSVQGLAADLLSNPVRVEAAPASTTVEKVDQMVL--FVPKDKKRALLGELLN 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D M   +IF   K     +   L  +G    AIHGN  Q +R + L  F+ G I+ +V
Sbjct: 242 DKD-MARVLIFTRTKHGANRVARYLHDRGIHSDAIHGNKAQNARQRALDGFRSGRIRALV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV NFD+PN  E+Y+HRIGRT RAG  G A +     +  H+  I
Sbjct: 301 ATDIAARGIDVEGVTHVINFDLPNDPESYVHRIGRTARAGAAGIAISFCDSGERAHLRDI 360

Query: 361 EKLIEKKV 368
           EK I +KV
Sbjct: 361 EKTIRQKV 368


>gi|83719171|ref|YP_441164.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
 gi|257140174|ref|ZP_05588436.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
 gi|83652996|gb|ABC37059.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
          Length = 482

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 164/372 (44%), Positives = 235/372 (63%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L     + R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRGARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            +K  LL 
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKNCTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|323967399|gb|EGB62820.1| DEAD/DEAH box helicase [Escherichia coli M863]
 gi|327253583|gb|EGE65212.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli STEC_7v]
          Length = 454

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 163/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ +E + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKNLAEKLLHNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|87302363|ref|ZP_01085188.1| Superfamily II DNA and RNA helicase [Synechococcus sp. WH 5701]
 gi|87283288|gb|EAQ75244.1| Superfamily II DNA and RNA helicase [Synechococcus sp. WH 5701]
          Length = 427

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 161/358 (44%), Positives = 229/358 (63%), Gaps = 4/358 (1%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG- 66
           +S  ++ A+   GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LPML  L  G 
Sbjct: 1   MSEPLLKAIALKGYTCPSPIQVQAIPAVLSGRDVMAAAQTGTGKTAGFTLPMLERLRHGP 60

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
            AR    R+L+L PTRELAAQVA++ + YG+  +L   ++ GG+    Q ++L RGADVL
Sbjct: 61  HARNNQVRSLVLTPTRELAAQVAESVQAYGRFLDLRGDVVFGGVKVNPQMQRLRRGADVL 120

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR++D + +  +  + +EILV+DEADRMLDMGFI  IQ I +L+P  RQ LLFSAT
Sbjct: 121 VATPGRLMDLYQQNAIRFDRLEILVLDEADRMLDMGFIRDIQKILALLPPKRQNLLFSAT 180

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
               ++K++   L  P +++    +  A  +E   V      ++K  LL  L++S D  +
Sbjct: 181 FNPSIRKLAHGLLHQPLQLQATPENRAAPLVEQ--VMHPCDMARKGDLLSHLIRSND-WQ 237

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             ++F   K     L   L ++G +  AIHGN  Q +R + L++FK G ++++VA+DLAA
Sbjct: 238 QVLVFSRTKHGANRLAERLSQEGVAAMAIHGNKSQGARTRALASFKSGELRVLVATDLAA 297

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RGLDI  + HV N D+PN AE+Y+HRIGRTGRAG+ G A +LVA E+ + + AIEK+I
Sbjct: 298 RGLDIEQLPHVVNLDLPNVAEDYVHRIGRTGRAGQSGHALSLVAAEEHELLRAIEKVI 355


>gi|189499873|ref|YP_001959343.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium
           phaeobacteroides BS1]
 gi|189495314|gb|ACE03862.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeobacteroides
           BS1]
          Length = 418

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 155/370 (41%), Positives = 232/370 (62%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ + L   ++ A+ + GY  PTPIQ + IP++L+  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MGFSSIDLIDPILQALREEGYSSPTPIQAQAIPMILEGRDLLGCAQTGTGKTAAFAIPLL 60

Query: 61  TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L   K   + +  R L++ PTRELA Q+ D+F  YG++  LT  ++ GG+    Q   
Sbjct: 61  QLLHARKTNEKKKKIRALVVTPTRELAMQIGDSFSAYGRHTGLTNQVIFGGVNQNPQTAS 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+++ TPGR+LD  N+G L + ++EILV+DEADRMLDMGFI  I+ I + +P  +
Sbjct: 121 LRKGVDIVVATPGRLLDLMNQGHLHLRDVEILVLDEADRMLDMGFIHDIRKILAALPQKK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+ +++   L+NP ++ V   SST +TI       +     K  LL  L
Sbjct: 181 QSLFFSATMPTEIVRLAGTILKNPAKVSVTPVSSTVDTIRQAVY--FVDKGNKNRLLVHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ ++ +K  ++F   K     +   L+K      AIHGN  Q +R + L NFKE T ++
Sbjct: 239 LKGEE-IKTALVFTRTKHGADKVVKFLQKHAVRAEAIHGNKGQGARQRALKNFKEQTTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+ HV NFD+ N AE Y+HRIGRTGRAG  G A +     + +++ 
Sbjct: 298 LVATDIAARGIDVDDLEHVINFDMSNVAETYVHRIGRTGRAGAKGTALSFCDAGEKEYLR 357

Query: 359 AIEKLIEKKV 368
            +EKLI KK+
Sbjct: 358 DVEKLIAKKI 367


>gi|323953540|gb|EGB49406.1| DEAD/DEAH box helicase [Escherichia coli H252]
          Length = 453

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 162/372 (43%), Positives = 237/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P RTLIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRTLILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|160874449|ref|YP_001553765.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|160859971|gb|ABX48505.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315266685|gb|ADT93538.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 411

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 177/410 (43%), Positives = 247/410 (60%), Gaps = 20/410 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L+ K+V  +   GY  PTPIQ++ IP +L + DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFSVLSLNSKLVNTLASLGYESPTPIQLEAIPAILAKRDVMAGAQTGTGKTAAFALPIL 60

Query: 61  ------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                 + L++  A VR  R L+L PTRELA QV  +F KY K  ++ V +  GG+  +A
Sbjct: 61  HHLLALSPLQELTA-VRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDA 119

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q      G DVLI TPGR+LDH  +G L +  + +LV DEADRMLDMGF+  IQ +   V
Sbjct: 120 QVAVFNAGIDVLIATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQV 179

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQTLLFSAT+   +  +S+  L++PK IEV   ++TA  IE    A  A   +K  L
Sbjct: 180 PSDRQTLLFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDA--DRKTEL 237

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +  L++S++     +IF   K+ V  L   L K      A HG++ Q +R K+L  FK+G
Sbjct: 238 VSHLVRSKN-WHQVLIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQG 296

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            IQ++VA+D+AARGLDI ++ +V NF++P  AE+YIHRIGRTGRAG  G A TL ++ED 
Sbjct: 297 KIQVLVATDVAARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDA 356

Query: 355 KHIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
             ++ +E +++K++   WL G      P   K+D       R+N    QK
Sbjct: 357 LLLEEVEVVLDKRLPQQWLPG----FEPDFNKMD----TEPRRNGKAAQK 398


>gi|171059329|ref|YP_001791678.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170776774|gb|ACB34913.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 479

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 163/373 (43%), Positives = 235/373 (63%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL+  ++ AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFDDLGLAQPILRAVHEEGYSIPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKG---RARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L  G   + R   P  R LIL PTRELAAQV ++   YGK   LT  ++ GG+    Q
Sbjct: 61  HKLAAGEPVKNRNGRPAIRALILTPTRELAAQVEESVRTYGKYLQLTSMVIFGGVGMGPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L +G D+L+ TPGR+LDH  +G + ++ ++  V+DEADRMLDMGF+  I+ + +++P
Sbjct: 121 VDRLRKGVDILVATPGRLLDHHQQGTIDLSQVQFFVLDEADRMLDMGFVHDIKKVLAIIP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE++ +++  L  P+ IEV   ++TAETI    +    +  K   LL
Sbjct: 181 AKKQSLLFSATFSDEIKALADRLLNKPQVIEVARRNTTAETIAQRVIKVGRENKKD--LL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++SQ+  +  ++F   K     LC  L K   S  AIHGN  Q +R K L+ FK G 
Sbjct: 239 AHLIKSQNWHQV-LVFTRMKHGANRLCEFLNKNDISAMAIHGNKSQGARTKALAEFKTGD 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARG+DI  + HV N+++PN  E+Y+HRIGRTGRAG  G+A +LV  ++  
Sbjct: 298 LTVLVATDIAARGIDIDMLPHVINYELPNVPEDYVHRIGRTGRAGAQGEALSLVCVDEEG 357

Query: 356 HIDAIEKLIEKKV 368
            +  IEKLI++ +
Sbjct: 358 FLADIEKLIKRSI 370


>gi|221068202|ref|ZP_03544307.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
 gi|220713225|gb|EED68593.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
          Length = 613

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 157/373 (42%), Positives = 242/373 (64%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AV + GY  PTPIQ + IPLVL  HD+   AQTGTGKTA+F LPML
Sbjct: 1   MTFEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L  G A       +  RTL+L PTRELAAQV +N   Y K  ++T  ++ GG+  + Q
Sbjct: 61  QRLASGTAPKNKFGGKGIRTLVLTPTRELAAQVEENLRGYAKYLDITSTVIFGGVGMKPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             ++E+G DVL+ TPGR+LD   +G + ++ +E+L++DEADRMLDMGFI  ++ + +LVP
Sbjct: 121 IARIEKGVDVLVATPGRLLDLAGQGFMDLSTVEMLILDEADRMLDMGFIHDVKKVLALVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE+++++   L+NP+ I+V   ++T + I+   +    +  KK  LL
Sbjct: 181 KDKQSLLFSATFSDEIRELANGLLRNPQSIQVTPRNTTVQRIKQV-IHPVGRGKKKQVLL 239

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             ++Q ++     ++F   K    N+   L K G S  A+HGN  Q +R + L  FK G 
Sbjct: 240 -HIIQ-ENNWSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGE 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VA+D+AARG+DI ++ +V N+++PN +E+Y+HRIGRTGRAGR G A +LV  ++  
Sbjct: 298 LRALVATDIAARGIDIDELPNVVNYEIPNISEDYVHRIGRTGRAGREGNAVSLVCMDEEG 357

Query: 356 HIDAIEKLIEKKV 368
            +  IE+  ++++
Sbjct: 358 FMMDIERFTKQEI 370


>gi|120599060|ref|YP_963634.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|146292869|ref|YP_001183293.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|120559153|gb|ABM25080.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145564559|gb|ABP75494.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 467

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 157/363 (43%), Positives = 226/363 (62%), Gaps = 4/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V A+ + GY  PTPIQ K IP++L   +V G AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSDPIVKAITELGYASPTPIQTKAIPVILSGKNVLGAAQTGTGKTASFVLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +     + R +  R +IL PTRELA QV +N  +Y K   LT   + GG+    Q KKL
Sbjct: 61  QMFADAPKIRPKRVRAIILTPTRELAVQVEENIRQYAKYLPLTSMAMYGGVDAAPQKKKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + + +LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDELSVLVLDEADRMLDMGFIEDINKIIEKLPPQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++ +++  ++NP  IE+   ++TA  I+     T     KK ALL  L+
Sbjct: 181 NLLFSATLSKQVRVLAKTAVENPIEIEIARNAATAPQIDQWL--TTVDKDKKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q      +IF   K+    L   LEK+     A H    Q  R ++L++FK G +  +
Sbjct: 239 KEQ-AWDQALIFIQTKQGAAKLVSQLEKRDIGAEAFHSGRSQAVREQLLADFKSGKLAFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +A+RG+DI  +  V N+D+P+ A++YIHRIGRTGRAG HG+A + V+K+D K++ A
Sbjct: 298 VATGVASRGIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGEHGEAISFVSKDDFKNLCA 357

Query: 360 IEK 362
           IE+
Sbjct: 358 IER 360


>gi|307293134|ref|ZP_07572980.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306881200|gb|EFN12416.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 460

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 159/377 (42%), Positives = 230/377 (61%), Gaps = 13/377 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL+  ++ A+    Y  PTPIQ + IP++L+  D+CGIAQTGTGKTA+F LP L
Sbjct: 1   MQFTDLGLAEPILRALAAKKYGSPTPIQAQAIPMLLKGKDLCGIAQTGTGKTAAFALPSL 60

Query: 61  TILEKGRARVRMP------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                  AR   P      R L+L PTRELAAQ+A +F  YG+   L+V ++ GG+P   
Sbjct: 61  DHF----ARNPKPTPLQGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVEVVFGGVPINR 116

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L RG D+++ TPGR+LD  ++    + + EI V+DEAD+M+DMGFI  ++ I  L+
Sbjct: 117 QIRTLGRGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLL 176

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ L FSATM  E++ ++  FL +P ++ V   S+TAE +     AT+    +K AL
Sbjct: 177 PKERQNLFFSATMPGEIEALAAQFLHDPVKVSVAPQSTTAERVRQQ--ATFVNQMEKQAL 234

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L   ++++D +   +IF   K     +   LE  G    AIHGN  Q  R   L  F+ G
Sbjct: 235 LNLTIRNED-IDRALIFTRTKHGADRVVRFLEGAGIQAVAIHGNKSQAQRTTALQAFRHG 293

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            ++L+VA+D+AARG+D+  V HV NF++PN  E Y+HRIGRT RAG  G A + VA ++ 
Sbjct: 294 HVKLLVATDIAARGIDVSGVSHVINFELPNVPEQYVHRIGRTARAGAEGIAISFVADDER 353

Query: 355 KHIDAIEKLIEKKVDWL 371
            ++ AIE+  + K+D +
Sbjct: 354 PYLKAIERTTKVKLDVV 370


>gi|189425674|ref|YP_001952851.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
 gi|189421933|gb|ACD96331.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 439

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 156/370 (42%), Positives = 231/370 (62%), Gaps = 8/370 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F      PKVV  +   GY  PTPIQ + IP ++  HD+ G+AQTGTGKTA+F LP+L
Sbjct: 1   MPFQQFSFHPKVVAGINALGYTTPTPIQAQAIPKIMAGHDLMGLAQTGTGKTAAFALPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G R +VR    L++ PTRELA Q+ D   + G+   L    + GG+    Q +KL
Sbjct: 61  HRLMQGPRKQVR---ALVIAPTRELAEQINDAMLELGQQTRLKSITVYGGVNVNPQIEKL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++++  PGR+LDH N+G + + N+E+LV+DEAD+M DMGF+P I+ I   +P  RQ
Sbjct: 118 KNGVEIVVACPGRLLDHINQGTIDLTNLELLVLDEADQMFDMGFLPDIRRILKHLPAQRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  E++ ++   L++P  ++V+   + A T+ H      AQ+  K  LL QLL
Sbjct: 178 TMLFSATMPAEIRGLAREILRDPATVQVDN-VAPAATVSHALYPV-AQH-LKTPLLMQLL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  DT  + +IF   K     +   LEK G++  ++ GN+ Q  R   +  F+ GT Q++
Sbjct: 235 KHTDT-DSVLIFTRTKHRAKRVGEQLEKAGYTAASLQGNLSQNRRQAAMDGFRNGTYQIL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV N+D+P+ +E YIHRIGRTGRA R+G AFT+V  ED   + A
Sbjct: 294 VATDIAARGIDVSQVSHVINYDIPDTSEAYIHRIGRTGRAARNGDAFTMVTDEDTLMVKA 353

Query: 360 IEKLIEKKVD 369
           IE+ +   ++
Sbjct: 354 IERTLGAAIE 363


>gi|167617991|ref|ZP_02386622.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
          Length = 435

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 164/372 (44%), Positives = 235/372 (63%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L     + R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRGARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            +K  LL 
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKNCTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|304395765|ref|ZP_07377648.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304357059|gb|EFM21423.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 457

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 163/374 (43%), Positives = 234/374 (62%), Gaps = 6/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA--RVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L       R R P R LIL PTRELAAQV +N   Y K  +L   ++ GG+    Q  
Sbjct: 61  QKLSATATPIRGRRPVRALILTPTRELAAQVGENVSDYSKYLSLRSMVVFGGVSINPQMV 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD   +  + ++ +E+LV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLAQQNAVDLSQVEVLVLDEADRMLDMGFIHDIRRVLARLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++E  L NP+ IEV   ++ +E +       +    +K  LL Q
Sbjct: 181 RQNLLFSATFSDEIKGLAEKLLTNPEMIEVARRNTASEQVAQQV--AFVDKKRKRELLSQ 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+  +   +  ++F   K    +L   L K G S  AIHGN  Q +R + L++FK G I+
Sbjct: 239 LI-GEGNWQQVLVFTRTKHGANHLAEQLGKDGISAAAIHGNKSQGARTRALADFKSGGIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN AE+Y+HRIGRTGRA   G A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGVALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL 371
             IE+L+++++  L
Sbjct: 358 RDIERLLKREIPRL 371


>gi|294637108|ref|ZP_06715421.1| ATP-dependent RNA helicase RhlE [Edwardsiella tarda ATCC 23685]
 gi|291089702|gb|EFE22263.1| ATP-dependent RNA helicase RhlE [Edwardsiella tarda ATCC 23685]
          Length = 452

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 173/424 (40%), Positives = 257/424 (60%), Gaps = 11/424 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL  +++ AV + GY  PTPIQ + IPLVLQR D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLCAELLRAVEEQGYRDPTPIQQQAIPLVLQRRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +L +    G+ R R  R LIL PTRELAAQ+ DN  +Y ++  L   ++ GG+    Q 
Sbjct: 61  QLLHQNPKNGKGR-RPVRALILTPTRELAAQIGDNVREYSRHLPLRSLVVFGGVSINPQM 119

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 120 MKLRGGVDVLVATPGRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPA 179

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
            RQ LLFSAT +DE++ ++ + L NP  +EV   ++ +E + +H  +       +K  LL
Sbjct: 180 KRQNLLFSATFSDEIKALAASLLHNPAEVEVARRNTASELVSQHVHL---VDKKRKRELL 236

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ SQD  +  ++F   K    +L   L K G S  AIHGN  Q +R + L++FK G 
Sbjct: 237 SFLIGSQD-WRQVLVFTRTKYGANHLAEQLNKDGISAAAIHGNKSQGARTRALADFKSGD 295

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+AARGLDI  + +V N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K
Sbjct: 296 IRVLVATDIAARGLDIDQLPYVVNYELPNVPEDYVHRIGRTGRAQATGEALSLVCVDEHK 355

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST-GFDRRKKNYS 414
            +  IE+L+++ +  +       +P ++   I       + N   ++ T G  RR     
Sbjct: 356 LLRDIERLLKRPIPRMAIAGYEPDPSIKAEPIQNGRQGGRQNGRNERGTQGQGRRGTGTR 415

Query: 415 SQKS 418
           S++S
Sbjct: 416 SKES 419


>gi|315641802|ref|ZP_07896806.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
 gi|315482477|gb|EFU73016.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
          Length = 522

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 160/384 (41%), Positives = 241/384 (62%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LSP+++ AV  +G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKELELSPELLKAVERSGFEEATPIQSETIPLALSGRDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++   + ++    L++ PTRELA Q  +   + GK+  + V  + GG     Q ++L+
Sbjct: 61  EKIDTSSSHLQ---GLVISPTRELAIQTQEELYRLGKDKKVRVMAVYGGADIGRQIRQLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  +E LV+DEAD ML+MGF+  I++I S VP TRQT
Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLETVETLVLDEADEMLNMGFLEDIESIISKVPSTRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F+QNP+ +++     TA+ I+  +V   ++  +K  ++ +LL 
Sbjct: 178 LLFSATMPPAIKSIGVKFMQNPEHVKIKAKEMTADLIDQYYVR--SKDFEKFDIMTRLLD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q T +  IIF   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 236 VQ-TPELTIIFGRTKRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMSYLHTI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       ++ L PP EK
Sbjct: 355 ENLTKKR-------MTPLRPPTEK 371


>gi|320527000|ref|ZP_08028189.1| putative ATP-dependent RNA helicase RhlE [Solobacterium moorei
           F0204]
 gi|320132585|gb|EFW25126.1| putative ATP-dependent RNA helicase RhlE [Solobacterium moorei
           F0204]
          Length = 459

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 159/377 (42%), Positives = 235/377 (62%), Gaps = 7/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F DL L   ++ AV  A Y  P+PIQ K IP++L+  D+   AQTGTGKTA+F LP+L
Sbjct: 1   MNFTDLELKEPILSAVNKAKYETPSPIQEKAIPVMLEGKDIVACAQTGTGKTAAFALPIL 60

Query: 61  TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             LE K + ++R    L+L PTRELA Q+ +NF+K+G+   L    + GG P   Q K L
Sbjct: 61  NKLEYKKKHQIR---ALVLTPTRELAVQIFENFKKFGRYLKLRACCVYGGAPSGPQRKAL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+LI TPGR+ D   +G++++++IE+ V+DEADRMLDMGFI  ++ I S +P  RQ
Sbjct: 118 RSGCDILIATPGRLNDFMVQGEIILSDIEVFVLDEADRMLDMGFIGDVRTIASRIPEARQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++FSATM  E+++++   L +P  I V  P+S AETI    V  Y + + K  LL+ +L
Sbjct: 178 TVMFSATMPKEIKELANELLHDPVDIRVAPPASPAETITQYLV--YCEKADKKRLLKDML 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S +  K  I+F   K     L   L + G  V  IHG+  Q  R   L  F+   + ++
Sbjct: 236 VSPEVTK-AIVFTRTKIGADRLTKKLIEDGIKVLTIHGDKTQGQRQNALQRFRTNQVDVL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HVFN+D+P   E+YIHRIGR GRAG+ G + +L   E++  + +
Sbjct: 295 VATDVAARGIDISGISHVFNYDLPEEDESYIHRIGRAGRAGKEGISISLCCHEELGLLAS 354

Query: 360 IEKLIEKKVDWLNGDLS 376
           IEK+++K++  +  + S
Sbjct: 355 IEKMLKKEIPLIRTEYS 371


>gi|311104225|ref|YP_003977078.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
 gi|310758914|gb|ADP14363.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
          Length = 493

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 161/371 (43%), Positives = 234/371 (63%), Gaps = 8/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D GL P ++ ++ + GY  PTPIQ + IP+V++  DV G AQTGTGKTA+F LP+L  
Sbjct: 19  FTDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHR 78

Query: 61  --TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              +     +  R P R LIL PTRELA QV ++ ++Y K   L  A++ GG+    Q +
Sbjct: 79  LMPLANTSASPARHPVRALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQKE 138

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG +VL+ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF+P ++ I  L+P  
Sbjct: 139 ALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQ 198

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT ++E++K+  ++L +P  IEV   ++TA TI    +A       K A +  
Sbjct: 199 RQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATANTITQ--IAYKMPSDAKRAAVVH 256

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++S+  +   I+F N K     L   LE+ G    +IHG+  Q  RMK L  FK G ++
Sbjct: 257 LVKSRG-LNQVIVFSNTKIGTARLARDLERDGVKAESIHGDKTQADRMKALEAFKAGELE 315

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  V  V N+D+P  AE+Y+HRIGRTGRAG  G+A  L   ++ + +
Sbjct: 316 VLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPDEERFL 375

Query: 358 DAIEKLIEKKV 368
             IEKLI+++V
Sbjct: 376 LDIEKLIKREV 386


>gi|269104692|ref|ZP_06157388.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268161332|gb|EEZ39829.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 430

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 176/419 (42%), Positives = 252/419 (60%), Gaps = 12/419 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G S ++V A+ + GY K TPIQ + IP + + HDV   AQTGTGKTA+F LP++
Sbjct: 1   MSFSAQGFSQELVKALTEIGYEKLTPIQKQAIPQLRRGHDVLANAQTGTGKTAAFSLPII 60

Query: 61  T-ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +L+  + R RM  R LIL PTREL  Q+A+N + Y +  +LT   + GG     Q KK
Sbjct: 61  QKMLDNPQPRSRMNVRALILAPTRELVEQIANNIKDYTRYTDLTTVAVFGGRKIATQEKK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+L+H     +L++NIE LV DEADRMLDMGFI  I+ I S V  T 
Sbjct: 121 LESGCDILVATPGRLLEHLELQNVLLSNIEFLVFDEADRMLDMGFISAIRTILSNVNSTP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT + ++ K++   L  PKRI V   +STAET+ H  V       +K  +L +L
Sbjct: 181 QIMLFSATFSSQMNKLAGELLNKPKRISVTPENSTAETVAH--VVYPVDEERKREMLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F N K+    L   LE  G      HG+  Q +R + L  FKEG  ++
Sbjct: 239 I-GKKNWQQVLVFVNYKETANQLVEELELDGIKAVLCHGDKAQGARRRALKEFKEGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+++AARGLDI  + HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+   + 
Sbjct: 298 MVATEVAARGLDIQGLPHVVNYDMPFLAEDYVHRIGRTGRAGQQGHAVSFVSREEELTLI 357

Query: 359 AIEKLIEK---KVDWLNGDLSSLNPPLEKIDIA---QHNHARKNNPIPQKSTGFDRRKK 411
            IE+LI +   +V  +  +  S +  LEK++     +    R NNP   KS+  +RR +
Sbjct: 358 QIERLIGQRIHRVQLVGYEPKSRDALLEKMNTKASFRDRRGRTNNPNEDKSSA-ERRAR 415


>gi|88812119|ref|ZP_01127371.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis
           Nb-231]
 gi|88790623|gb|EAR21738.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis
           Nb-231]
          Length = 429

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 159/368 (43%), Positives = 229/368 (62%), Gaps = 3/368 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   GLS  ++ AV   GY  PTPIQ + IPLV+   D+   AQTGTGKTA+F LP+L
Sbjct: 1   MTFDCFGLSADILRAVRTEGYTTPTPIQAQAIPLVVAGRDLLAAAQTGTGKTAAFTLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     R R PR L+L PTRELAAQV ++   YG++  L    + GG+    Q   L 
Sbjct: 61  QRLSAVPTRHRAPRALVLTPTRELAAQVRESVRSYGRHLPLRSTAVFGGVGINPQISALR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR+LDH  +  + ++ +EI V+DEADRMLDMGFI  I+ + + +P  RQ 
Sbjct: 121 SGVDVVVATPGRLLDHLQQRTVELSRVEIFVLDEADRMLDMGFIRDIRKVMAALPQKRQN 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT + E++K+++  L +P  ++    +S AE I H  V   AQ S+K ALL  L+ 
Sbjct: 181 LLFSATFSGEIRKLADQILHDPASVDTAPRNSVAELITHK-VHPVAQ-SRKRALLAHLI- 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F   K     L   L++ G +  AIH +  Q +R K L +FK G ++++V
Sbjct: 238 GNGKWSQVLVFTRTKHGANRLATQLDRDGLNATAIHSSKSQSARTKALQDFKRGRVRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + HV N+++ N AE+Y+HRIGRTGRAG  G+A +LV+ ++ KH+  I
Sbjct: 298 ATDIAARGLDIEALPHVVNYELSNIAEDYVHRIGRTGRAGSQGQAVSLVSADERKHLANI 357

Query: 361 EKLIEKKV 368
           E+L+ +++
Sbjct: 358 ERLLGRRL 365


>gi|114320766|ref|YP_742449.1| DEAD/DEAH box helicase domain-containing protein [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227160|gb|ABI56959.1| DEAD/DEAH box helicase domain protein [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 427

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 173/374 (46%), Positives = 242/374 (64%), Gaps = 11/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY KPTP+Q + IP +LQ  DV   AQTGTGKTA F LPML
Sbjct: 1   MSFDSLGLSAVLLRAVAEQGYSKPTPVQAQAIPAILQGGDVMAAAQTGTGKTAGFTLPML 60

Query: 61  TIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L     E GR RVR    LIL PTRELAAQV D+ + YG    L  A++ GG+    Q
Sbjct: 61  ERLSQNRPEGGRRRVR---ALILTPTRELAAQVRDSVKTYGGKLPLKTAVIFGGVGMNPQ 117

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L RG D+++ TPGR+LDH  +G + ++ +E+LV+DEADRMLDMGFI  I+ + + VP
Sbjct: 118 IQTLRRGVDIVVATPGRLLDHMGQGTVDLSGVEMLVLDEADRMLDMGFIRDIRRVIAAVP 177

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTL+FSAT + E+++++E  L+NP +IEV   ++ AE +            +K ALL
Sbjct: 178 KQRQTLMFSATFSKEIRQLAEGMLRNPTQIEVAARNTAAENVNQRV--HPVSRGEKRALL 235

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+Q  D  +  ++F   K     L   L++ G S  AIHGN  Q +R K L+ FK+G 
Sbjct: 236 SNLIQDGD-WRQVLVFTRTKHGADRLARQLDQDGLSSAAIHGNKSQSARTKALAQFKQGR 294

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRAGR G+A +LV  ++ K
Sbjct: 295 VRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGRGGEALSLVCVDEHK 354

Query: 356 HIDAIEKLIEKKVD 369
            +D I KL+++ +D
Sbjct: 355 LLDGIHKLLKRPID 368


>gi|253687917|ref|YP_003017107.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251754495|gb|ACT12571.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 477

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 164/377 (43%), Positives = 238/377 (63%), Gaps = 16/377 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  PTP+Q + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSADILRAIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L       KG+ R R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    
Sbjct: 61  QLLNSREAQNKGKGR-RPVRALILTPTRELAAQIDENVKAYSKYLRLRSLVVFGGVSINP 119

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +
Sbjct: 120 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKL 179

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKK 231
           P  RQ LLFSAT +DE++ ++   L NP  +EV   NTPS       H     +    +K
Sbjct: 180 PAKRQNLLFSATFSDEIKALANKLLTNPASVEVVRRNTPSELVTQHVH-----FVDKRRK 234

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL QL+  ++  +  ++F   K    +L   LEK G +  AIHGN  Q +R + L+NF
Sbjct: 235 RELLSQLI-GENNWQQVLVFTRTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANF 293

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K+G+I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  
Sbjct: 294 KDGSIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCV 353

Query: 352 EDIKHIDAIEKLIEKKV 368
           ++ K +  IE+L+++++
Sbjct: 354 DEHKLLRDIERLLKREI 370


>gi|332652507|ref|ZP_08418252.1| putative ATP-dependent RNA helicase RhlE [Ruminococcaceae bacterium
           D16]
 gi|332517653|gb|EGJ47256.1| putative ATP-dependent RNA helicase RhlE [Ruminococcaceae bacterium
           D16]
          Length = 628

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 159/368 (43%), Positives = 223/368 (60%), Gaps = 3/368 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL P+++ A+ + GY KP+PIQ + IP  L   DV G AQTGTGKT +F  P+L
Sbjct: 1   MTFEDLGLCPQILAALKEEGYEKPSPIQEQAIPPALAGRDVLGCAQTGTGKTCAFAAPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L    A     R LIL PTRELA Q+ ++FE YG++  L  A++ GG+    Q +KL 
Sbjct: 61  QRLSNKPASGHPIRALILTPTRELAIQIGESFEHYGRHLALRCAVIFGGVGQAPQVEKLG 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+ D + +G + +N++EI V+DEADRMLDMGFI  ++ I   +P  +QT
Sbjct: 121 KGVDILVATPGRLGDLYQQGFIHLNDLEIFVLDEADRMLDMGFIHDVKKILKWLPEKKQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+ ++  + L +P R+ V+  SS  E I       +     K  LL  LL 
Sbjct: 181 LFFSATMPKEIAELVNSLLHHPARVAVDPVSSPVEAIRQSVY--FVDRGNKTKLL-SLLM 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +KN ++F   K     +   L K G +  AIHGN  Q +R + L++FK G I+ +V
Sbjct: 238 DQLGVKNALVFTRTKHGANKVARDLVKAGITAAAIHGNKSQTARQQALADFKSGAIRCLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++ HVFN+++P   E Y+HRIGRTGRAG  G A       +   +  I
Sbjct: 298 ATDIAARGLDIEELSHVFNYNLPEVPETYVHRIGRTGRAGHGGTAVAFCDFSEKPLLKEI 357

Query: 361 EKLIEKKV 368
           EKLI + +
Sbjct: 358 EKLIGRAI 365


>gi|157146569|ref|YP_001453888.1| ATP-dependent RNA helicase RhlE [Citrobacter koseri ATCC BAA-895]
 gi|157083774|gb|ABV13452.1| hypothetical protein CKO_02330 [Citrobacter koseri ATCC BAA-895]
          Length = 454

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 162/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I ++  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITQQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPPK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ +E + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 QMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|4104820|gb|AAD02177.1| RNA helicase [Anabaena variabilis]
          Length = 425

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 165/374 (44%), Positives = 235/374 (62%), Gaps = 7/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS +++ AV + GY KPTPIQ+++IP VL   D+   AQTGTGKTASF LP+L
Sbjct: 1   MSFSHLGLSNEIINAVTELGYTKPTPIQMQSIPAVLSGRDLLRGAQTGTGKTASFTLPLL 60

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                I+ K        R LIL PTRELAAQV  +   YGK   L   ++ GG+    Q 
Sbjct: 61  HYYPKIVLKALQCFLTIRALILTPTRELAAQVESSVRDYGKYLKLNSMVMFGGVSINPQK 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++L+   D+L+ TPGR+LDH  +G + ++ IEILV+DEADRMLDMGFI  I+ I SL+P 
Sbjct: 121 QRLKGRVDILVATPGRLLDHVQQGTVNLSQIEILVLDEADRMLDMGFIRDIRRILSLLPK 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLF AT +D++++++   L  P+ IEV   + TA+T+         +  +K  LL 
Sbjct: 181 QRQNLLFFATFSDKIKELAAGLLNRPQMIEVARRNVTADTVTQKVYKI--ERDRKRDLLA 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ +D     ++F   K     L   L  +     AIHGN  Q +R   L+ FK G++
Sbjct: 239 HLIR-KDNWYQVLVFTRTKYGADRLVKQLGHERIQALAIHGNKSQSARTHALAKFKNGSL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARGLDI ++ +V NFD+P   E+Y+HRIGRTGRAG  G+A +LV+ ++   
Sbjct: 298 QVLVATDIAARGLDISELPYVVNFDLPYVPEDYVHRIGRTGRAGASGEAVSLVSADEYHL 357

Query: 357 IDAIEKLIEKKVDW 370
           +  IEKLIEK++ +
Sbjct: 358 LADIEKLIEKRLPF 371


>gi|226941463|ref|YP_002796537.1| RhlE4 [Laribacter hongkongensis HLHK9]
 gi|226716390|gb|ACO75528.1| RhlE4 [Laribacter hongkongensis HLHK9]
          Length = 457

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 166/374 (44%), Positives = 235/374 (62%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+LGL  +V  AV + GY +PTPIQ + IP VL   DV   AQTGTGKTA+F LP++
Sbjct: 2   MTFAELGLPAEVQRAVDELGYAEPTPIQARAIPEVLTGRDVLAAAQTGTGKTAAFTLPII 61

Query: 61  TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L         P     R LIL PTRELA Q+A + + Y K   L    + GG+  + Q
Sbjct: 62  ARLRHYATHSVSPAMHPVRCLILTPTRELADQIAASVQSYTKYLPLRHTCVFGGVNMDPQ 121

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG D+++ TPGR+LDH  +  + +N +E+LV+DEADRMLDMGFI  I+ I + +P
Sbjct: 122 KADLMRGMDIVVATPGRLLDHLEQKTIQLNRVEMLVLDEADRMLDMGFILDIRRILAQLP 181

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            TRQTLLFSAT + E++K++  F ++P  IEV   ++TA T+E    A  A   +K  LL
Sbjct: 182 KTRQTLLFSATFSPEIKKLAAEFQRDPVTIEVARQNTTAATVEQAVYAVDA--GQKRRLL 239

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK-QGFSVCAIHGNIDQRSRMKILSNFKEG 294
            +L+ ++  M   I+FC  K+    L   L         AIHG+  Q++R+  L+ FK+G
Sbjct: 240 ARLI-NERAMSQVIVFCRTKQGADRLARELRNFDRLDAEAIHGDKAQQARLDTLAAFKDG 298

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            ++++VA+D+AARGLD+ D+  V NFD+PN  E+Y+HRIGRTGRAG+ G A +L+  E+ 
Sbjct: 299 KLRILVATDVAARGLDVSDLPFVVNFDLPNSPEDYVHRIGRTGRAGQSGVAISLMDAEEQ 358

Query: 355 KHIDAIEKLIEKKV 368
           K ++AIEKL  + +
Sbjct: 359 KLLEAIEKLTRQTL 372


>gi|254437196|ref|ZP_05050690.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
           307]
 gi|198252642|gb|EDY76956.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
           307]
          Length = 435

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 155/375 (41%), Positives = 235/375 (62%), Gaps = 5/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  LGL+P+++  +   G + PTPIQ + IP  +   DV G+A+TG+GKTA+F LPM+
Sbjct: 1   MDFDMLGLAPRLIAELKSQGIIDPTPIQAQAIPHAMNGRDVMGLAKTGSGKTAAFGLPMI 60

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L  E+G+   +  R LIL PTRELA Q+ +N   Y +  +L   L++GG     Q +K
Sbjct: 61  DMLLKEQGKPEGKTARALILAPTRELAKQIQENLAAYTQGTHLKTMLVVGGAGITGQIRK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG D+L+ TPGR++D   R  + + + + LV+DEAD+MLDMGFI  ++ I  L+   R
Sbjct: 121 LERGVDLLVATPGRLIDLLERRAVRLGDTKFLVLDEADQMLDMGFIHALRQIAPLLAPER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATM   + +++  FL+NP R++V+ P    E IE   V   A+ +K   LL+ +
Sbjct: 181 QTMLFSATMPKLMAELAGAFLKNPMRVQVDAPGKPVERIEQS-VHFVAKAAKTDLLLELI 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            + +D  +  I+F   K     L   L  +GF   +IHGN  Q  R + +++FK G +++
Sbjct: 240 DKHRD--ERAIVFGRTKHGSEKLHKLLASKGFLSASIHGNKSQGQRDRAITDFKAGKVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIP+V H++N+D+PN AENY+HRIGRT RAG  G A    A +++  + 
Sbjct: 298 LVATDVAARGLDIPEVKHIYNYDLPNVAENYVHRIGRTARAGADGMAIAFCAPDEMGELR 357

Query: 359 AIEKLIEKKVDWLNG 373
            I+K ++  +    G
Sbjct: 358 DIQKAMKADIPVAGG 372


>gi|90579695|ref|ZP_01235504.1| ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90439269|gb|EAS64451.1| ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 455

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 157/365 (43%), Positives = 226/365 (61%), Gaps = 4/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL+  +V AV + GY  PTPIQ K IP+ L   ++   AQTGTGKTA FVLP+L
Sbjct: 1   MPFSKLGLNDSIVKAVTEMGYTSPTPIQEKAIPVALTGKNLMAAAQTGTGKTAGFVLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L+ G + R +  R LIL PTRELA QV DN ++Y K+ NLT   + GG+ +E Q ++L
Sbjct: 61  QMLDDGTKVRAKRIRALILAPTRELAVQVEDNIKQYSKHLNLTSMAMYGGVDYEPQKRRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + IEILV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IEGVDILVATPGRLLDMYTKRAIHFDAIEILVLDEADRMLDMGFIEDINKIVERLPVDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT++D+++ +++  ++NP  I V   +S    I+   V        K ALL  L+
Sbjct: 181 NMLFSATLSDQVRFLAKTAVRNPIEISVAKDASADPKIDQWLVTV--DKDMKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q Q      +IF   K     L   LEK+G S  + H    Q  R ++L +FK G +Q +
Sbjct: 239 QEQ-KWDQALIFIETKHGAAKLVTQLEKRGISAESFHSGRSQAVRSQLLEDFKNGKLQYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ +A+RG+DI  +  V N+D+P   E Y+HRIGRTGRAG  G+A + V++++ K++  
Sbjct: 298 IATGVASRGIDIEQLTRVVNYDLPFPPEEYVHRIGRTGRAGASGEAISFVSRDNFKNLCM 357

Query: 360 IEKLI 364
           IE L+
Sbjct: 358 IESLL 362


>gi|288904866|ref|YP_003430088.1| ATP-dependent RNA helicase [Streptococcus gallolyticus UCN34]
 gi|288731592|emb|CBI13147.1| putative ATP-dependent RNA helicase [Streptococcus gallolyticus
           UCN34]
          Length = 526

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 156/371 (42%), Positives = 236/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ AV  AG+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R  V+    L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L 
Sbjct: 61  DKIDTNRNLVQ---ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L ++++E L++DEAD ML+MGF+  I+ I S VP TRQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + ++++   F+QNP+ ++V     T + ++  ++    Q   K   + +L+ 
Sbjct: 178 LLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQ--DKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +G+    IHG++DQ  R+++L +FK   I ++V
Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+HG++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYLSII 354

Query: 361 EKLIEKKVDWL 371
           EKL +K++  L
Sbjct: 355 EKLTKKRMKGL 365


>gi|205352078|ref|YP_002225879.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205271859|emb|CAR36694.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326627120|gb|EGE33463.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 453

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 162/372 (43%), Positives = 237/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q++  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++   
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHNL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|307130576|ref|YP_003882592.1| putative ATP-dependent RNA helicase [Dickeya dadantii 3937]
 gi|306528105|gb|ADM98035.1| Putative ATP-dependent RNA helicase [Dickeya dadantii 3937]
          Length = 454

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 163/374 (43%), Positives = 237/374 (63%), Gaps = 12/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY +PTP+Q + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFESLGLSADILRAVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TIL--EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L     +A+ R P R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    Q  
Sbjct: 61  QLLNGRPSQAKGRRPVRALILTPTRELAAQIGENVQAYSKYLRLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+LI TPGR+LD  ++  + ++++EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILIATPGRLLDLEHQNAVDLSHVEILVLDEADRMLDMGFIHDIRRVLAKLPPK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKKCAL 234
           RQ LLFSAT +DE+++++   L NP  +EV   NTPS       H     +    +K  L
Sbjct: 181 RQNLLFSATFSDEIKELAGKLLTNPASVEVVRRNTPSELVTQHVH-----FVDKKRKREL 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L+   D  +  ++F   K    +L   L K G +  AIHGN  Q +R + L+NFK+G
Sbjct: 236 LSHLIGKHD-WRQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALANFKDG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ 
Sbjct: 295 DIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCVDEH 354

Query: 355 KHIDAIEKLIEKKV 368
           K +  IE+L+++++
Sbjct: 355 KLLRDIERLLKREI 368


>gi|197334932|ref|YP_002155940.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197316422|gb|ACH65869.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 431

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 172/429 (40%), Positives = 254/429 (59%), Gaps = 12/429 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P++V A+ + GY K TPIQ K IPL  + HD+   AQTGTGKTA+F LP++
Sbjct: 1   MSFSSQGFAPEIVKALTECGYQKLTPIQQKAIPLARKGHDILANAQTGTGKTAAFALPVI 60

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L   K  A  R  R LIL PTRELA Q+A N   Y K  +LTV  + GG    +Q + 
Sbjct: 61  QQLLDSKKSATRRTARALILAPTRELAEQIAVNIADYTKYTSLTVTSVFGGKKMSSQERA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H     + + N+E LV DEADRMLDMGF+  I+NI   V  + 
Sbjct: 121 LEPGVDILVATPGRLQEHIEEENVSIANLEFLVFDEADRMLDMGFVNAIRNIMMEVNTSP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT + ++ K++ + L+ PKRI V+  ++TA TI H  V       +K  LL +L
Sbjct: 181 QIMLFSATSSAQMNKLASDILRKPKRISVDPENTTASTIAH--VVYPVDEERKTELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F N K+    +   L+  G      HG+  Q +R + L  FKEG  ++
Sbjct: 239 I-GRKNWQQVLVFVNYKETANEIVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+   + 
Sbjct: 298 MVATDVAARGLDIADLPHVINYDMPFLAEDYVHRIGRTGRAGKKGHAISFVSREEELTVV 357

Query: 359 AIEKLIE---KKVDWLNGDLSSLNPPLEKIDIA---QHNHARKNNPIPQKSTGFDR-RKK 411
            +E LI+   ++V+    +  + +  ++K++     ++   R NNP   +S+   R R K
Sbjct: 358 QVETLIQQRIRRVEQPGYEPKNRDAYIDKVNTKSAFKNRKGRTNNPNEDQSSAERRMRLK 417

Query: 412 NYSSQKSHI 420
           N    K+ I
Sbjct: 418 NVIQNKARI 426


>gi|325266846|ref|ZP_08133517.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
 gi|324981587|gb|EGC17228.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
          Length = 452

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 155/366 (42%), Positives = 240/366 (65%), Gaps = 8/366 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL  ++V A+ + GY +PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 4   FAELGLGAEIVAALEEQGYQQPTPIQEAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 63

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N ++Y KN  L   +L GG+  + Q  
Sbjct: 64  LKRYANASASPAMHPVRMLVLTPTRELADQIDQNTQRYIKNLPLRHTVLFGGVNMDKQTA 123

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G ++++ T GR+LDH  +  +++N +EI+V+DEADRMLDMGFI  I+NI  ++P  
Sbjct: 124 QLRSGCEIVVATVGRLLDHVKQKNIVLNKVEIVVLDEADRMLDMGFIDDIRNIMQMLPRP 183

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT    ++K++++F+ +P+ +EV   ++T   +E   +A      +K  LL++
Sbjct: 184 RQTLLFSATFAPAIRKLAQDFMHSPEVVEVAAQNTTNANVEQHVIAV--DTHRKRDLLER 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+     M+  I+FC  K++   +   L ++G SV AIHG+  Q++R+ +LS FK G+++
Sbjct: 242 LIVDLG-MQQVIVFCKTKQSADQVARDLARRGLSVSAIHGDKSQQTRLDVLSQFKAGSLR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P +AE+Y+HRIGRTGRAG  G A +++ + + K  
Sbjct: 301 VLVATDVAARGLDIAELPFVVNYEMPVQAEDYVHRIGRTGRAGADGVAISMMDESEQKMY 360

Query: 358 DAIEKL 363
           DAI+ L
Sbjct: 361 DAIKAL 366


>gi|241766307|ref|ZP_04764197.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
 gi|241363561|gb|EER58995.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
          Length = 448

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 157/373 (42%), Positives = 239/373 (64%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AV + GY  PTPIQ + IP VL+ HD+   AQTGTGKTA+F LPML
Sbjct: 1   MKFEELNLAPAILKAVQETGYETPTPIQAQAIPAVLEGHDLLAGAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L +G A       +  R L+L PTRELAAQV ++  +YGK  ++   ++ GG+    Q
Sbjct: 61  HRLSQGTAPKNKFGGKGIRALVLTPTRELAAQVEESVREYGKYLDINSTVVFGGVGMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +++RG D+L+ TPGR+LD   +G L ++ +E+LV+DEADRMLDMGFI  ++ + +LVP
Sbjct: 121 IDRIKRGVDILVATPGRLLDLQQQGFLDLSTVEVLVLDEADRMLDMGFIHDVKKVLALVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE+++++   L+NP+ I+V   ++T + I    V       KK  +L
Sbjct: 181 KDKQSLLFSATFSDEIRELANTLLKNPQSIQVTPSNTTVQRITQ--VIHPVGRGKKKQVL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             ++Q Q      ++F   K    N+   L K G    A+HGN  Q +R + L+ FK G 
Sbjct: 239 LHIIQ-QHNWSQVLVFTRTKFGANNVAEFLTKNGVQAMALHGNKSQSARTQALAGFKSGE 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ +VA+D+AARG+DI D+ HV N+++PN +E+Y+HRIGRTGRAG  G+A +LV  ++  
Sbjct: 298 IRALVATDIAARGIDIDDLPHVVNYEIPNVSEDYVHRIGRTGRAGASGEAVSLVCMDEEG 357

Query: 356 HIDAIEKLIEKKV 368
            +  IE+  ++++
Sbjct: 358 FMMDIERFTKQQI 370


>gi|78224236|ref|YP_385983.1| DEAD/DEAH box helicase-like [Geobacter metallireducens GS-15]
 gi|78195491|gb|ABB33258.1| DEAD/DEAH box helicase-like protein [Geobacter metallireducens
           GS-15]
          Length = 452

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 165/409 (40%), Positives = 242/409 (59%), Gaps = 9/409 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+L L P ++ AV   GY  PTPIQ + IP  L+  D+   AQTGTGKTA+FVLP L
Sbjct: 1   MTFAELNLLPPILKAVAACGYTDPTPIQAQAIPRALEGRDLLATAQTGTGKTAAFVLPAL 60

Query: 61  TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +  +   R PR L+L PTRELA QV D    YGK   +    ++GG+P+  Q + L
Sbjct: 61  QRLARPAQKPGRGPRVLVLTPTRELAQQVTDAVRSYGKFLRIRSGAILGGMPYREQLRLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR++D  +R  L ++ +E+L++DEADRMLDMGF   +  + +  P  RQ
Sbjct: 121 SAPVDLIVATPGRLVDLLDRRSLDLSRLELLILDEADRMLDMGFSDDVDRVAAASPSDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQL 238
           TLLF+ATM   + +++   L  P+RIEV    +T E IE    VA     S K  LLQ L
Sbjct: 181 TLLFTATMDATMARLAGRLLNEPERIEVAGTKTTHEHIEQRLHVAD--DLSHKNRLLQHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   D ++  IIF   K++  N+   L  QG S  A+HG++ Q +R + ++  K+G I+L
Sbjct: 239 ITDGD-VRKAIIFSATKRDAENMAIELRSQGHSAAALHGDMPQSARNRTIAAMKQGRIRL 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  + HV NFD+P  AE+Y+HRIGRTGRAG  G A +  +  ++ ++ 
Sbjct: 298 LVATDVAARGLDVSGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVSYLA 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNP--PLEKIDIAQHNHARKNNPIPQKSTG 405
            IE+ I + +      +  L P  PL ++   + +    +   P+KS G
Sbjct: 358 RIERYIGQTLP--EHQIPGLEPRRPLHRVSTGRGSRPGNSTGGPRKSYG 404


>gi|306833030|ref|ZP_07466162.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338]
 gi|304424929|gb|EFM28063.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338]
          Length = 526

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 156/371 (42%), Positives = 236/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ AV  AG+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R  V+    L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L 
Sbjct: 61  NKIDTNRNVVQ---ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L ++++E L++DEAD ML+MGF+  I+ I S VP TRQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + ++++   F+QNP+ ++V     T + ++  ++    Q   K   + +L+ 
Sbjct: 178 LLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQ--DKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +G+    IHG++DQ  R+++L +FK   I ++V
Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+HG++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYLSII 354

Query: 361 EKLIEKKVDWL 371
           EKL +K++  L
Sbjct: 355 EKLTKKRMKGL 365


>gi|325977801|ref|YP_004287517.1| DEAD-box ATP-dependent RNA helicase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325177729|emb|CBZ47773.1| DEAD-box ATP-dependent RNA helicase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 526

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 156/371 (42%), Positives = 236/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ AV  AG+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R  V+    L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L 
Sbjct: 61  DKIDTNRNLVQ---ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L ++++E L++DEAD ML+MGF+  I+ I S VP TRQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + ++++   F+QNP+ ++V     T + ++  ++    Q   K   + +L+ 
Sbjct: 178 LLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQ--DKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +G+    IHG++DQ  R+++L +FK   I ++V
Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+HG++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYLSII 354

Query: 361 EKLIEKKVDWL 371
           EKL +K++  L
Sbjct: 355 EKLTKKRMKGL 365


>gi|217974215|ref|YP_002358966.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217499350|gb|ACK47543.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 412

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 176/410 (42%), Positives = 246/410 (60%), Gaps = 20/410 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L+  +V  +   GY  PTPIQ++ IP +L + DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFSVLSLNSTLVNTLASLGYESPTPIQLEAIPAILAKRDVMAGAQTGTGKTAAFALPIL 60

Query: 61  ------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                 + L++  A VR  R L+L PTRELA QV  +F KY K  ++ V +  GG+  +A
Sbjct: 61  HHLLALSPLQELTA-VRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDA 119

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q      G DVLI TPGR+LDH  +G L +  + +LV DEADRMLDMGF+  IQ +   V
Sbjct: 120 QVAVFNAGIDVLIATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQV 179

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQTLLFSAT+   +  +S+  L++PK IEV   ++TA  IE    A  A   +K  L
Sbjct: 180 PSDRQTLLFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDA--DRKTEL 237

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +  L++S++     +IF   K+ V  L   L K      A HG++ Q +R K+L  FK+G
Sbjct: 238 VSHLVRSKN-WHQVLIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQG 296

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            IQ++VA+D+AARGLDI ++ +V NF++P  AE+YIHRIGRTGRAG  G A TL ++ED 
Sbjct: 297 KIQVLVATDVAARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSTGLAITLFSQEDA 356

Query: 355 KHIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
             ++ +E +++K++   WL G      P   K+D       R+N    QK
Sbjct: 357 LLLEEVEVVLDKRLPQQWLTG----FEPDFNKMD----AEPRRNGKAAQK 398


>gi|318041670|ref|ZP_07973626.1| putative ATP-dependent RNA helicase [Synechococcus sp. CB0101]
          Length = 407

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 159/350 (45%), Positives = 225/350 (64%), Gaps = 4/350 (1%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG-RARVRMPR 74
           +L+ GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LPML  L  G  AR  + R
Sbjct: 1   MLEKGYTNPSPIQTQCIPAVLEGRDVMAAAQTGTGKTAGFTLPMLERLRHGPHARNNVVR 60

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTRELAAQV +N   Y ++ +L   ++ GG+    Q  +L  GADVL+ TPGR++
Sbjct: 61  ALVLTPTRELAAQVGENVAAYSRHLDLRSDVVFGGVKINPQMMRLRGGADVLVATPGRLM 120

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D   +  + +N +EILV+DEADRMLDMGFI  IQ I +L+P  RQ LLFSAT    ++K+
Sbjct: 121 DLAQQNAVKLNRVEILVLDEADRMLDMGFIRDIQKILALLPAKRQNLLFSATFEASIKKL 180

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           +   L NP +++    + TA T+EH         ++K  LL  L++S D  +  ++F   
Sbjct: 181 ATGLLHNPVQLQATPENRTATTVEHLL--HPCDMARKPDLLCHLIKSND-WQQVLVFSRT 237

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K     +   L ++G +  AIHGN  Q +R + L+ FK G ++++VA+D+AARG+DI  +
Sbjct: 238 KHGANRIADRLTQEGMAAAAIHGNKSQGARTRALAGFKSGELRVLVATDIAARGIDIHQL 297

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
            HV N D+PN+AE+Y+HRIGRTGRAG +G A +LVA E+ + + AIE+LI
Sbjct: 298 PHVVNLDLPNQAEDYVHRIGRTGRAGCNGHAVSLVAAEEHELLRAIERLI 347


>gi|212636318|ref|YP_002312843.1| DEAD box helicase [Shewanella piezotolerans WP3]
 gi|212557802|gb|ACJ30256.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 446

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 161/362 (44%), Positives = 231/362 (63%), Gaps = 4/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V AV + GY  PTPIQ K+IP++L   ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSNPIVTAVTEQGYTSPTPIQAKSIPVILSGRNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L + +  R +  R LIL PTRELA QV  N   YGK+  LT   + GG+  + Q ++L
Sbjct: 61  QLLSQSQTQRKKRIRALILTPTRELAVQVEANIALYGKHLALTSMAMYGGVDAKPQRQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + ++ILV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 LDGVDILVATPGRLLDMYTQRAIHFDELDILVLDEADRMLDMGFIEDIDKIMDKLPADRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT++ +++ +++  +  P  I V   + +   IE     T     KK ALL  L+
Sbjct: 181 SLLFSATLSHQVKALAKTAIDKPVEISVIANTDSKPKIEQWL--TTVDKDKKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +++    +IF   K+    L   LEK+G +   IHG   Q  R KIL++FK G I L+
Sbjct: 239 K-ENSWHQALIFIETKQGAAKLVSQLEKRGINAECIHGGRSQEVREKILADFKAGEIGLL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ +AARGLDI ++  V N+D+P  A++YIHRIGRTGRAG +G+A +LV+K+D K++  
Sbjct: 298 IATGVAARGLDIDELPLVINYDLPYPADDYIHRIGRTGRAGANGEAVSLVSKDDFKNLCM 357

Query: 360 IE 361
           IE
Sbjct: 358 IE 359


>gi|186475195|ref|YP_001856665.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184191654|gb|ACC69619.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 522

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 164/371 (44%), Positives = 230/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSEPLVRAVNELGYTSPTPIQQQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  T---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                +       R+ R LIL PTRELAAQV ++   YGK   L   ++ GG+    Q  
Sbjct: 61  QRLLTMPPAPGGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQID 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+++ TPGR+LDH  +  + ++++EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 ALRRGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++++ L  P  IEV   ++TAET+            +K  LL  
Sbjct: 181 RQNLLFSATFSDEIKALADSLLDAPALIEVARRNTTAETVAQKIHPV--DRDRKRELLTH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+Q
Sbjct: 239 LIKQHNWFQV-LVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKNNTLQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++++ +
Sbjct: 298 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLL 357

Query: 358 DAIEKLIEKKV 368
             IEKLI++ V
Sbjct: 358 KDIEKLIKRAV 368


>gi|33598813|ref|NP_886456.1| putative ATP-dependent RNA helicase [Bordetella parapertussis
           12822]
 gi|33574943|emb|CAE39607.1| putative ATP-dependent RNA helicase [Bordetella parapertussis]
          Length = 481

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 161/358 (44%), Positives = 228/358 (63%), Gaps = 6/358 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR--- 71
           A+ D GY  PTPIQ + IPLVLQ  D+   AQTGTGKTA F LP+L  L + +   R   
Sbjct: 3   AIADTGYTAPTPIQAQAIPLVLQGGDLLAAAQTGTGKTAGFTLPILHRLMQTKPAARKPG 62

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
            PR LIL PTREL AQVA++ + YGK  +L+  ++ GG+    Q   L++  D+L+ TPG
Sbjct: 63  RPRCLILTPTRELTAQVAESVQTYGKYASLSSMVMFGGVNINPQISALKKPLDILVATPG 122

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ + +L+P  RQ LLFSAT +DE+
Sbjct: 123 RLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQRQNLLFSATFSDEI 182

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
           + ++   L +P  + V TP +TA  +    V    Q+ K+  L+  L++ +      ++F
Sbjct: 183 RSLARGVLNDPGEVSV-TPRNTATELVTQTVHLVEQHHKRD-LVSHLIR-ESGWHQVLVF 239

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
              K     L   L K G S  AIHGN  Q +R + LS FK+G++ ++VA+D+AARGLDI
Sbjct: 240 TRTKHGANRLAEKLVKDGLSAAAIHGNKSQSARTRALSGFKDGSVAVLVATDIAARGLDI 299

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
             +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV   +IK + AIE+LI+K ++
Sbjct: 300 DQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDDSEIKLLKAIERLIKKPIE 357


>gi|254428186|ref|ZP_05041893.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
 gi|196194355|gb|EDX89314.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
          Length = 457

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 156/370 (42%), Positives = 231/370 (62%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL   +  AV + GY  P+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MHFSDLGLCDALQAAVAERGYDTPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G  AR    R L+L PTRELAAQVA++   YGKN  LT +++ GG+    Q ++L
Sbjct: 61  ERLRTGTPARNNQVRALVLTPTRELAAQVAESVSTYGKNLPLTSSVVFGGVKINPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR+LD + +  +  +++E+L++DEADRMLDMGFI  I+ I S +P  RQ
Sbjct: 121 RGGCDVLVATPGRLLDLYQQNAVKFDHLEVLILDEADRMLDMGFIHDIRKILSKLPPKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT + E++ +++  + +P  ++++  ++T E +            +K ALL  L+
Sbjct: 181 NLMFSATFSPEIRALAKGLVNDPVEVDISPRNTTTELVTQWIAPV--DKKRKPALLTHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q     +  ++F   K     L   LE  G    AIHGN  Q +R + L++FK G ++ +
Sbjct: 239 QEHGWFQV-LVFSRTKHGANKLAKQLEANGIEAAAIHGNKSQNARTRALADFKNGKVRAL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N D+PN  E+Y+HRIGRTGRAG  G+A +LV+ ++ + +  
Sbjct: 298 VATDIAARGLDIEQLPQVVNVDLPNVPEDYVHRIGRTGRAGATGQAISLVSADEFQQLKD 357

Query: 360 IEKLIEKKVD 369
           IE+L +++++
Sbjct: 358 IERLTQQQLE 367


>gi|59713557|ref|YP_206332.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|59481805|gb|AAW87444.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 434

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 168/416 (40%), Positives = 249/416 (59%), Gaps = 20/416 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+ +++  V + G+ + TPIQ + IPLVLQ HDV   AQTGTGKTA+F LP++
Sbjct: 17  MSFASLGLTKQILTTVAELGFKEATPIQEQAIPLVLQGHDVLAGAQTGTGKTAAFGLPLI 76

Query: 61  TILEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L +         ++ R+LIL PTRELA QV D+   Y +N  L V +  GG     Q 
Sbjct: 77  QRLIESPIERHEESKVVRSLILTPTRELAQQVFDSLVSYTQNTELKVVVAYGGTSINVQK 136

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  GAD+LI TPGR+LDH +   + +N  E LV+DEADRMLDMGFIP I+ I   +P 
Sbjct: 137 ENLLGGADILIATPGRLLDHLHIKTITLNQAEYLVLDEADRMLDMGFIPDIKKILRKMPD 196

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSAT + ++++++   L  PK ++V   +STAET+E           +K  LL 
Sbjct: 197 ERQTLFFSATFSKKVREIAYYMLNKPKEVQVTPTNSTAETVEQMVYP--VDKHRKSELLA 254

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L+ S++  +  ++F   K+    L   L+K G    +I+G+  Q +R++ L  FK G +
Sbjct: 255 YLIGSRN-WQQVLVFTKTKQGSDELVKELKKDGIKAASINGDKSQGARLRALEEFKTGKV 313

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V N+++P +AE+Y+HRIGRTGRAG  GKA +L++ ++   
Sbjct: 314 RALIATDVAARGLDIEQLECVINYELPFKAEDYVHRIGRTGRAGHTGKAISLMSMDEEYL 373

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           + AIE L++ ++  +WL G     N PL           R++ P   +    D+RK
Sbjct: 374 LKAIETLLDTRLPQEWLQGYEPDPNAPL-----------REDRPRQSRGRSSDKRK 418


>gi|46202850|ref|ZP_00052498.2| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 402

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 160/348 (45%), Positives = 225/348 (64%), Gaps = 5/348 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL+  ++ A+   GY  PTPIQ ++IP +LQ  DV G+AQTGTGKTASF LP+L  
Sbjct: 5   FSELGLAEPLLKALEAEGYTTPTPIQEQSIPHLLQGSDVLGLAQTGTGKTASFALPLLQR 64

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L+  K RA  +  R L+L PTRELA QV  +F+ YG +Y L  AL+ GG+    Q K + 
Sbjct: 65  LDQFKKRAMPKSCRILVLTPTRELAVQVGQSFKTYGCHYRLRHALVFGGVGMVPQIKTMA 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVL+ TPGR+LD  ++G + ++++E LV+DEADRMLDMGFI  I+ I ++VP  RQT
Sbjct: 125 GGVDVLVATPGRLLDLIDQGAIRLDSVEALVLDEADRMLDMGFIQPIRKIVAMVPKQRQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM D +  ++ + L  P R+EV   SST + I+   +  +     K  LL  +L 
Sbjct: 185 VLFSATMPDSIVGLANSVLHTPVRVEVTPVSSTVDKIDQKVL--FVDREHKRTLLTDILG 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D ++  ++F   K     +   LEK G    AIHGN  Q +R K LS+F++G I+ +V
Sbjct: 243 GADVVR-ALVFTRTKHGANRVVELLEKAGIDADAIHGNKSQGARQKALSDFRDGKIKALV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           A+D+AARG+D+  + HV NF++PN  E+Y+HRIGRT RAG  G A +L
Sbjct: 302 ATDIAARGIDVDGITHVINFELPNEPESYVHRIGRTARAGASGIALSL 349


>gi|319957241|ref|YP_004168504.1| dead/deah box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
 gi|319419645|gb|ADV46755.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
          Length = 421

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 159/368 (43%), Positives = 235/368 (63%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P ++ AV   GY  PTPIQ + IP VL+ HDV   AQTGTGKTA F LP+L  
Sbjct: 8   FDTLGLDPAILKAVSAEGYTTPTPIQAQAIPAVLEGHDVLAAAQTGTGKTAGFTLPLLER 67

Query: 63  LEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L +   + + R  R L+L PTRELAAQVA++   YGKN  +   ++ GG+  E Q + + 
Sbjct: 68  LIQNPRQMKARQVRALVLTPTRELAAQVAESVRTYGKNLKIRSTVVYGGVGIEPQKRAIA 127

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR+LD  N+  + ++ +E L++DEADRMLDMGFI  I+ I +  P  RQT
Sbjct: 128 RGCEIVIATPGRLLDLANQRAIDLSALETLILDEADRMLDMGFIHDIKKIIAQTPKERQT 187

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT + E+++++   L++P  IEV   ++TAE +       +    +K  LL ++++
Sbjct: 188 LLFSATFSPEIKRLAAGMLKDPVLIEVARQNTTAEQVSQKV--HHVDRHRKQELLIRMIK 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   K  ++F   K     L   L++ G    AIHGN  Q +RMK L +FKE  ++++V
Sbjct: 246 EKG-WKQVLVFTRTKHGANKLSKQLDQAGIPSEAIHGNKTQNARMKALKSFKENRVRVLV 304

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + HV NF++PN AE+Y+HRIGRTGRAG  G+A +LV  ++ + +  I
Sbjct: 305 ATDIAARGIDIAALPHVVNFELPNVAEDYVHRIGRTGRAGSEGEALSLVCVDEHQLLRNI 364

Query: 361 EKLIEKKV 368
           E+ I+ ++
Sbjct: 365 ERFIKAEI 372


>gi|189426565|ref|YP_001953742.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
 gi|189422824|gb|ACD97222.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 436

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 155/375 (41%), Positives = 235/375 (62%), Gaps = 15/375 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGL P+++ A+   GY  PTPIQ + IP++ +  D+   AQTGTGKTA+F LP++
Sbjct: 6   VSFDSLGLRPELLSAITSLGYTSPTPIQAEAIPVIFEGCDLLAGAQTGTGKTAAFALPIV 65

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L +     + R PR L+L PTRELAAQV+D   +Y +  +L   ++ GG+  +AQ ++
Sbjct: 66  QMLAETTPAEKRRKPRALVLVPTRELAAQVSDEMNRYARRLSLRSTMIYGGVTIQAQIER 125

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+++ TPGR+LDH  RG + ++ I+ LV+DEADRMLD+GFI  I+ +   +P   
Sbjct: 126 LHRGVDIVVATPGRLLDHAERGTIDLSRIKFLVLDEADRMLDLGFIDEIKKVAEYLPAKH 185

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQ 237
           Q LLFSAT +  ++++++  L  PKR+EV   + TAE +     A Y  + S+K  +L  
Sbjct: 186 QALLFSATYSQNIKQLADQLLDQPKRVEVARRTLTAEAVTQ---AVYQVERSRKREMLSF 242

Query: 238 LLQSQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L++     KNG    ++F   +     L   L   G    AIH N  Q  R + L+ FK+
Sbjct: 243 LIR-----KNGWNQVLVFTRTRYGADKLTEELLFDGIKAAAIHSNKSQSIRTRTLAEFKQ 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G  +++VA+D+AARGLDI  + HV N+D+P   E+Y+HRIGRTGRAG  G A +LV++E+
Sbjct: 298 GAFRVLVATDVAARGLDIERLPHVVNYDLPQVPEDYVHRIGRTGRAGEEGIAISLVSQEE 357

Query: 354 IKHIDAIEKLIEKKV 368
              + AIEKL+++ +
Sbjct: 358 QILLAAIEKLVKQSI 372


>gi|170750207|ref|YP_001756467.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656729|gb|ACB25784.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 506

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 156/381 (40%), Positives = 235/381 (61%), Gaps = 6/381 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D GL+  V+ A+ +AGYV PTPIQ + IP  ++  D+CGIAQTGTGKTA+F LP+L  
Sbjct: 4   FTDFGLAQPVLRALSEAGYVAPTPIQAQAIPPAMEGRDLCGIAQTGTGKTAAFALPILHR 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   RA  R  R L+L PTRELA Q+A++F  YG++ + T  ++ GG+    Q + L 
Sbjct: 64  LSLSDRRAPRRGCRVLVLSPTRELANQIAESFTDYGRHLSYTTTVVFGGVTISRQERALA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGR++D  +R  L +  +EILV+DEAD+MLD+GFI  ++ I  ++P  RQ+
Sbjct: 124 PGVDILVATPGRLIDLVDRRSLTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPEKRQS 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   +  ++  +L +P ++ V   ++TAE +E   +  +     K ALL  +L+
Sbjct: 184 LFFSATMPKNIAGLAAQYLTDPVQVAVTPVATTAERVEQEVI--FVHTGAKQALLGHILR 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               ++  ++F   K     +   L+K G +  AIHGN  Q  R + L+ FK+G+ +++V
Sbjct: 242 D-PAIERVLVFTRTKHGADRVVRGLDKVGIAAAAIHGNKSQPQRERALAAFKDGSCRVLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV NFD+PN  E+Y+HRIGRT RAG  G A +    E+  ++  I
Sbjct: 301 ATDIAARGIDVEGVSHVVNFDLPNVPESYVHRIGRTARAGADGLAISFCNDEEKAYLRDI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPP 381
           E++  +KV  + G      PP
Sbjct: 361 ERVTRQKVP-VAGFPEGFTPP 380


>gi|284920649|emb|CBG33712.1| putative ATP-dependent RNA helicase [Escherichia coli 042]
          Length = 454

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 237/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV+  ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKNLAEKLLHNPLEIEVSRRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|28900445|ref|NP_800100.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260362335|ref|ZP_05775298.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260877397|ref|ZP_05889752.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260898434|ref|ZP_05906930.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|28808756|dbj|BAC61933.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085113|gb|EFO34808.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308090744|gb|EFO40439.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308111119|gb|EFO48659.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|328470398|gb|EGF41309.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus 10329]
          Length = 430

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 163/408 (39%), Positives = 249/408 (61%), Gaps = 15/408 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P+VV A+ + GY K TPIQ K IP+  + HD+   AQTGTGKTA+F LPM+
Sbjct: 1   MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMI 60

Query: 61  T-ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +L+ GR A  +  R LIL PTRELA Q+ADN + Y K  +L+V  + GG    +Q   
Sbjct: 61  QQLLDSGRTASRKTARALILAPTRELAEQIADNIKAYTKYTDLSVVAVFGGRKMSSQVSA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H  +G + + N+E LV DEADR+LDMGFI  ++ I   V    
Sbjct: 121 LENGVDILVATPGRLEEHIEQGNVSVANLEFLVFDEADRILDMGFIHAVRKIMLDVDTDP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L  ++++ L+ PKRIEV   ++TA T+ H          +K  LL +L
Sbjct: 181 QIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAHTVAHVLYPV--DQERKTELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F N K+   ++   L+  G      HG+  Q +R + L  FK G +++
Sbjct: 239 I-GRKNWQQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V +++   + 
Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNRDEELTVV 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPP-----LEKIDIA---QHNHARKNNP 398
            +E LI++++  +  +L+   P      +EK++     ++   R+NNP
Sbjct: 358 QVENLIQQRIRRI--ELAGYEPKQRESYIEKLNSKPAFKNRQGRRNNP 403


>gi|119775819|ref|YP_928559.1| DEAD-box ATP dependent DNA helicase [Shewanella amazonensis SB2B]
 gi|119768319|gb|ABM00890.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis
           SB2B]
          Length = 533

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 158/369 (42%), Positives = 232/369 (62%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  ++ A+   GY  P+PIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLSAPILKALDHKGYKTPSPIQAQAIPVVLEGRDLLAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +  +A  +  R LIL PTRELAAQ+ADN   Y K   L   ++ GG+    Q   L
Sbjct: 61  ELLSQTQKAGPKQVRALILTPTRELAAQIADNITAYSKYLPLKSTVVFGGVGIGPQITTL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD   +  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 RRGIDILVATPGRLLDLHQQNAVSFHGLEILVLDEADRMLDMGFIHDIKRILKLLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++ ++   L N   + V   +S AE+++   V      ++K ALL +L 
Sbjct: 181 NLLFSATFSPEIRTLAHGLLHNAAEVSVTPRNSAAESVKQWIVPV--DKNQKPALLAELT 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +     +  ++FC  K     L   ++ +G    AIHGN  Q +R + L++FK G I+++
Sbjct: 239 RFY-RWQQVLVFCRTKHGANRLVRQMDAEGIKAAAIHGNKSQNARTQALADFKRGAIRML 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI ++ +V NF++P+  E+Y+HRIGRTGRAG  G+A +LV  E+ K +  
Sbjct: 298 IATDIAARGIDISELPNVVNFELPHVPEDYVHRIGRTGRAGASGEAASLVCNEEAKQLRD 357

Query: 360 IEKLIEKKV 368
           IE+LI++ +
Sbjct: 358 IERLIKQSL 366


>gi|332088993|gb|EGI94105.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 5216-82]
          Length = 441

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 237/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT++D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATLSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|33603888|ref|NP_891448.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
 gi|33568864|emb|CAE35278.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
          Length = 481

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 161/358 (44%), Positives = 228/358 (63%), Gaps = 6/358 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR--- 71
           A+ D GY  PTPIQ + IPLVLQ  D+   AQTGTGKTA F LP+L  L + +   R   
Sbjct: 3   AIADTGYTAPTPIQAQAIPLVLQGGDLLAAAQTGTGKTAGFTLPILHRLMQTKPAARKPG 62

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
            PR LIL PTREL AQVA++ + YGK  +L+  ++ GG+    Q   L++  D+L+ TPG
Sbjct: 63  RPRCLILTPTRELTAQVAESVQTYGKYASLSSMVMFGGVNINPQISALKKPLDILVATPG 122

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ + +L+P  RQ LLFSAT +DE+
Sbjct: 123 RLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQRQNLLFSATFSDEI 182

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
           + ++   L +P  + V TP +TA  +    V    Q+ K+  L+  L++ +      ++F
Sbjct: 183 RSLARGVLNDPGEVSV-TPRNTATELVTQTVHLVEQHHKRD-LVSHLIR-ESGWHQVLVF 239

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
              K     L   L K G S  AIHGN  Q +R + LS FK+G++ ++VA+D+AARGLDI
Sbjct: 240 TRTKHGANRLAEKLVKDGLSAAAIHGNKSQSARTRALSGFKDGSVAVLVATDIAARGLDI 299

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
             +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV   +IK + AIE+LI+K ++
Sbjct: 300 DQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDDSEIKLLKAIERLIKKPIE 357


>gi|315645365|ref|ZP_07898490.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315279407|gb|EFU42713.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 506

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 158/371 (42%), Positives = 232/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL +SP ++ A+    Y +PTPIQ + IP VL   D+ G AQTGTGKTA+F +PM+
Sbjct: 17  MTFQDLNISPVILKALAKENYKEPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMI 76

Query: 61  TILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L +   +    R  R L+L PTRELA Q++DN + Y +   L    ++GG+  + Q +
Sbjct: 77  QLLNEQPPKPGMARRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQER 136

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++GAD+LI TPGR+LD  N+ ++ + ++EILV+DEADRMLDMGFI  ++ I S +P  
Sbjct: 137 ALQQGADILIATPGRLLDLMNQKRIDLQHVEILVLDEADRMLDMGFIHDVKRIISKMPSK 196

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTL FSATM  E+ ++ +  LQNP ++E+   SSTAE I+        +   K   L +
Sbjct: 197 KQTLFFSATMPAEITQLVKTLLQNPVKVEITPVSSTAERIKQSVY--LLETGNKQKQLNE 254

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++   ++ + ++F   K+    +   L K   +  AIHGN  Q SR   L NFK G  +
Sbjct: 255 LMKD-PSIVSALVFTRTKRGADRVVRDLTKVNITAQAIHGNKSQVSRQTALKNFKSGETR 313

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++ HV NF++PN  E Y+HRIGRTGRAG  G A +    ++I  +
Sbjct: 314 VLVATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAISFCEVDEIPFL 373

Query: 358 DAIEKLIEKKV 368
             IEKLI K +
Sbjct: 374 RDIEKLIGKSI 384


>gi|87198262|ref|YP_495519.1| DEAD/DEAH box helicase-like [Novosphingobium aromaticivorans DSM
           12444]
 gi|87133943|gb|ABD24685.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 498

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 161/376 (42%), Positives = 233/376 (61%), Gaps = 11/376 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGL+  ++ A+   GY  PTPIQ + IP +L+  D+ GIAQTGTGKTA+F LP L  
Sbjct: 4   FSDLGLAEPILRALETKGYNDPTPIQRQAIPALLEGRDLLGIAQTGTGKTAAFALPSLHR 63

Query: 63  LEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L     + R P   R L+L PTRELAAQ+ADN + Y +N NL V  + GG+P   Q ++L
Sbjct: 64  L-AANPQPRKPASCRMLVLSPTRELAAQIADNMKGYARNLNLIVDCVFGGVPIGKQARRL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD  +   L +   EI V+DEAD+M+D+GFI  ++ + +L+P TRQ
Sbjct: 123 VPGVDILVATPGRLLDLIDNRALTLGRTEIFVLDEADQMMDLGFIHALKRVANLLPKTRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL---- 235
           +L FSATM   ++ + + F+ NP R+EV   S+TAE +E     T+   ++K ALL    
Sbjct: 183 SLFFSATMPKAIEDLGKQFIVNPVRVEVAPNSTTAERVEQ--YVTFINQAEKQALLTLRI 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + LL++++ +   ++F   K     +   L   G    AIHGN  Q  R   L  F++G+
Sbjct: 241 RDLLKTKE-LDRALVFTRTKHGADRVVRHLSSAGIDARAIHGNKSQAQRTAALEAFRQGS 299

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+D+AARG+D+  V HVFNF++PN  E Y+HRIGRT RAG  G A +  A ++  
Sbjct: 300 CPVLVATDIAARGIDVSGVSHVFNFELPNVPEQYVHRIGRTARAGADGIAISFCAPDEKP 359

Query: 356 HIDAIEKLIEKKVDWL 371
           ++  IE+L   KVD L
Sbjct: 360 YLKDIERLTRVKVDAL 375


>gi|162448970|ref|YP_001611337.1| ATP-independent RNA helicase [Sorangium cellulosum 'So ce 56']
 gi|161159552|emb|CAN90857.1| ATP-independent RNA helicase [Sorangium cellulosum 'So ce 56']
          Length = 624

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 153/368 (41%), Positives = 221/368 (60%), Gaps = 2/368 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++P ++  + + GY +PTPIQ + IP +L   D+ G A TGTGKTA+F LP+L  
Sbjct: 10  FAALGIAPALLGVLAELGYEEPTPIQREAIPHLLTGRDLLGQAATGTGKTAAFALPLLQR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE G    R+P  L+L PTRELA QVA+   +YG+   + V  + GG PF  Q + L RG
Sbjct: 70  LEIGGEPPRLPEALVLVPTRELAMQVAEAMHRYGRRLGVQVLSVYGGQPFGQQLRALRRG 129

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR LDH  RG L ++ I  +V+DEAD MLDMGF   ++ I S  P  RQT+L
Sbjct: 130 VHVVVATPGRTLDHIGRGTLALDGIRTVVLDEADEMLDMGFAEALEEILSATPGARQTVL 189

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQS 241
           FSAT+   +  ++   L+ P R+++    +    +       Y    + K A L ++L  
Sbjct: 190 FSATLPPRIAAIAGRHLREPVRVKIAGEKAAPGELPRVRQTAYIVPRAHKSAALTRVLDM 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D   + I+FC  +  V  L  +L  +G+   A+HG   Q  R ++++ F+ GT +L+VA
Sbjct: 250 EDP-SSAILFCRTRNEVDELTEALRARGYEAQALHGGFSQEHRDRVMARFRAGTAELLVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV N+DVP   E Y+HRIGRTGRAGR G A TLV   +   I  +E
Sbjct: 309 TDVAARGLDIEHVSHVINYDVPCAPEVYVHRIGRTGRAGREGAAITLVEPREHYLIRNVE 368

Query: 362 KLIEKKVD 369
           +L  ++++
Sbjct: 369 RLTGQRIE 376


>gi|324116221|gb|EGC10143.1| DEAD/DEAH box helicase [Escherichia coli E1167]
          Length = 454

 Score =  306 bits (784), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 237/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|167950812|ref|ZP_02537886.1| DEAD/DEAH box helicase domain protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 415

 Score =  306 bits (784), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 164/371 (44%), Positives = 242/371 (65%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY + TP+Q + IP++L   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFEKLGLSGPILRAVSEQGYTQTTPVQQQAIPVILSGRDVMAGAQTGTGKTAGFTLPLL 60

Query: 61  TILE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +LE   +G+ R R  R L+L P RELAAQV ++ E+YGK   L   ++ GG+    Q +
Sbjct: 61  ELLEEHAQGKGR-RPVRALVLTPNRELAAQVGESVEQYGKYLPLKSTVIFGGVKINPQIE 119

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LDH ++  L +++IEILV+DEADRMLDMGFI  I+ +  L+P  
Sbjct: 120 KLRHGVDILVATPGRLLDHVSQKTLDLSHIEILVLDEADRMLDMGFIHDIRKVLRLLPHE 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT + E+++++ + L  P++IEV   ++ AE +    V      ++K  LL  
Sbjct: 180 RQNLLFSATYSQEIKRLASDLLNQPEQIEVARRNTAAELVSQ--VVYPVDKARKRELLSH 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++ + +  +  ++F   K     L   LEK G S  AIHGN  Q +R + L+NFK G ++
Sbjct: 238 MIGA-NNWRQVLVFTRTKHGANRLAQQLEKDGLSAAAIHGNKSQGARTRALANFKSGEVR 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRAG  G+A +LV  ++ K +
Sbjct: 297 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGNEGEAVSLVCIDEHKLL 356

Query: 358 DAIEKLIEKKV 368
             IE+L+++K+
Sbjct: 357 RDIERLLKRKI 367


>gi|153839129|ref|ZP_01991796.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|260902834|ref|ZP_05911229.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|149747384|gb|EDM58352.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|308107831|gb|EFO45371.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
          Length = 430

 Score =  306 bits (784), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 163/408 (39%), Positives = 249/408 (61%), Gaps = 15/408 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P+VV A+ + GY K TPIQ K IP+  + HD+   AQTGTGKTA+F LPM+
Sbjct: 1   MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMI 60

Query: 61  T-ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +L+ GR A  +  R LIL PTRELA Q+ADN + Y K  +L+V  + GG    +Q   
Sbjct: 61  QQLLDSGRTASRKTARALILAPTRELAEQIADNIKAYTKYTDLSVVAVFGGRKMSSQISA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H  +G + + N+E LV DEADR+LDMGFI  ++ I   V    
Sbjct: 121 LENGVDILVATPGRLEEHIEQGNVSVANLEFLVFDEADRILDMGFIHAVRKIMLDVDTDP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L  ++++ L+ PKRIEV   ++TA T+ H          +K  LL +L
Sbjct: 181 QIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAHTVAHVLYPV--DQERKTELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F N K+   ++   L+  G      HG+  Q +R + L  FK G +++
Sbjct: 239 I-GRKNWQQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V +++   + 
Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNRDEELTVV 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPP-----LEKIDIA---QHNHARKNNP 398
            +E LI++++  +  +L+   P      +EK++     ++   R+NNP
Sbjct: 358 QVENLIQQRIRRI--ELAGYEPKQRESYIEKLNSKPAFKNRQGRRNNP 403


>gi|218549636|ref|YP_002383427.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ATCC 35469]
 gi|218357177|emb|CAQ89812.1| RNA helicase [Escherichia fergusonii ATCC 35469]
          Length = 454

 Score =  306 bits (784), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 162/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKNLAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|254452993|ref|ZP_05066430.1| ATP-dependent RNA helicase RhlE [Octadecabacter antarcticus 238]
 gi|198267399|gb|EDY91669.1| ATP-dependent RNA helicase RhlE [Octadecabacter antarcticus 238]
          Length = 439

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 156/370 (42%), Positives = 232/370 (62%), Gaps = 5/370 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-- 63
           LGL+P+++  +   G V PTPIQ + IP  +   DV G+A+TG+GKTA+F LPM+ +L  
Sbjct: 2   LGLAPRLIAELKSQGIVDPTPIQAQAIPHAMNGRDVMGLAKTGSGKTAAFGLPMIDMLLK 61

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
           E+G+   +  R LIL PTRELA Q+ +N E Y K  +L   L++GG     Q +KLERG 
Sbjct: 62  EQGKPEGKTARALILAPTRELAKQIQENLEAYTKGTHLKTMLVVGGAGITGQIRKLERGV 121

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
           D+L+ TPGR++D   R  + + + + LV+DEAD+MLDMGFI  ++ I  L+   RQT+LF
Sbjct: 122 DLLVATPGRLIDLLERRAVRLGDTKFLVLDEADQMLDMGFIHALRQIAPLLAPERQTMLF 181

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM   + +++  FL+NP R++V+ P    E IE   V   A+ +K   LL+ + + +D
Sbjct: 182 SATMPKLMAELAGAFLKNPMRVQVDAPGKPVERIEQS-VHFVAKAAKTDLLLELIDKHRD 240

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +  I+F   K     L   L  +GF   +IHGN  Q  R + +++FK G + ++VA+D
Sbjct: 241 --ERAIVFGRTKHGSEKLHKLLASKGFLSASIHGNKSQGQRDRAITDFKAGKVTILVATD 298

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARGLDIP+V HV+N+D+PN AENY+HRIGRT RAG  G A    A +++  +  I+K 
Sbjct: 299 VAARGLDIPEVKHVYNYDLPNVAENYVHRIGRTARAGADGMAIAFCAPDEMGELRDIQKA 358

Query: 364 IEKKVDWLNG 373
           ++  +    G
Sbjct: 359 MKADIPVAGG 368


>gi|163746467|ref|ZP_02153825.1| putative ATP-dependent RNA helicase, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161380352|gb|EDQ04763.1| putative ATP-dependent RNA helicase, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 438

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 165/389 (42%), Positives = 243/389 (62%), Gaps = 15/389 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  +GL  K+V  + + G   PTPIQ + IP  +   DV G+AQTGTGKTA+F +P+L 
Sbjct: 3   DFDMMGLPKKLVARLNEMGLKDPTPIQRQAIPQAMNGRDVMGLAQTGTGKTAAFGVPLLA 62

Query: 62  -ILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++E +GR   R  R L+L PTRELA Q+A N   Y +   + VA+++GG     Q K+L
Sbjct: 63  QMMELEGRPEPRSVRGLVLAPTRELAQQIAVNLRGYAEGTQIKVAMVVGGQSINTQIKRL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+LI TPGR+LD  +R  + ++    LV+DEAD+MLDMGFI  ++ I++L+P  RQ
Sbjct: 123 ERGVDLLIATPGRLLDLLDRRAVKLDTTTFLVLDEADQMLDMGFIHDLRKISNLIPKERQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQ 237
           T+LFSATM   + +++ ++L +P RIEV+ P   A+ +  E  F+A     ++K  LL++
Sbjct: 183 TMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKVTQEVHFIAK----AEKTELLKE 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL ++   +  ++F   K     L  +L K GF   +IHGN  Q  R + ++ FK G I 
Sbjct: 239 LL-AKHKGERALVFGRTKHGSEKLMKTLVKAGFDAASIHGNKSQGQRDRAIAGFKGGDIT 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIPDV HV+NF++PN  +NY+HRIGRT RAG+ G A    A +++  +
Sbjct: 298 VLVATDVAARGLDIPDVKHVYNFELPNVPDNYVHRIGRTARAGKDGAAVAFCAPDEMGEL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
            AI+K +   +   +G       P E ID
Sbjct: 358 KAIQKTMGISIPVASGR------PWEVID 380


>gi|253698823|ref|YP_003020012.1| DEAD/DEAH box helicase [Geobacter sp. M21]
 gi|251773673|gb|ACT16254.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
          Length = 449

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 168/415 (40%), Positives = 240/415 (57%), Gaps = 10/415 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L LS  ++ A+   GY +PTPIQ ++IPL L   D+ G AQTGTGKTASFVLP L
Sbjct: 1   MSFETLNLSAPILKAIQACGYTQPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPAL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L     R + PR L+L PTRELA QV D    YGK   +    ++GG+P+  Q   L
Sbjct: 61  ERLLTPSPLRGKGPRILVLTPTRELAIQVVDAVRSYGKFMRVRCGSILGGMPYRDQMMLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++DH +R  +  + +E+LV+DEADRMLDMGF   +  I    P  RQ
Sbjct: 121 AQPVDIIVATPGRLIDHLDRRSINFSRLEMLVLDEADRMLDMGFSDDVDRIADAAPAERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLF+ATM D + K+++  L++P R+ V         IE     T      K  LLQ L+
Sbjct: 181 TLLFTATMDDAMAKLAQRLLKDPVRVAVEGTEVANLQIEQRLHVT-DDMRHKNRLLQHLV 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S  ++   IIF   KK+   L   L  QG +  A+HG++ Q +R K ++N + G ++L+
Sbjct: 240 -SDASVTKAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNKTITNMRRGKVRLL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P  AE+Y+HRIGRTGRAG  G A +  +  ++ ++D 
Sbjct: 299 VATDVAARGLDVTGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMNEVAYLDR 358

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           IE+   KK+     +      PL + +      ARK  P       FD RKK ++
Sbjct: 359 IERFTGKKLPMHVVEGFEPTRPLRRGNSGAPG-ARKGRP------SFDPRKKGFA 406


>gi|209694846|ref|YP_002262774.1| putative helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida
           LFI1238]
 gi|208008797|emb|CAQ78997.1| putative helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida
           LFI1238]
          Length = 434

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 161/370 (43%), Positives = 229/370 (61%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  GL+P+VV A+ + GY K TPIQ K IPL  + HD+   AQTGTGKTA+F LP++
Sbjct: 1   MSFSSQGLAPEVVKALTECGYQKLTPIQQKAIPLARKGHDILANAQTGTGKTAAFALPVI 60

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L   K  A  R  R LIL PTRELA Q+A N   Y K  +L V  + GG    +Q + 
Sbjct: 61  QRLLDTKKSATRRSARALILAPTRELAEQIAVNIISYTKYTSLKVTAVFGGKKMSSQERA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+L+ TPGR+ +H   G + + N+E LV DEADRMLDMGF+  I+NI   V    
Sbjct: 121 LDPGVDILVATPGRLQEHIEEGNVSIANLEFLVFDEADRMLDMGFVNAIRNIMMEVNSAP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT + ++ K++ + L+ PKRI V+  + TA TI H  V       +K  LL +L
Sbjct: 181 QIMLFSATSSAQMNKLASDILRKPKRISVDRENMTATTISH--VVYPVDEERKTELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F N K+   N+   L+  G      HG+  Q +R + L  FKEG  ++
Sbjct: 239 I-GRKNWQQVLVFVNYKETANNIVKELKLDGIKAVICHGDKAQSARRRALEEFKEGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+   + 
Sbjct: 298 MVATDVAARGLDIADLPHVINYDMPFLAEDYVHRIGRTGRAGKKGHAISFVSREEELTVV 357

Query: 359 AIEKLIEKKV 368
            +E LI++++
Sbjct: 358 QVETLIQQRI 367


>gi|150007803|ref|YP_001302546.1| ATP-dependent RNA helicase DeaD [Parabacteroides distasonis ATCC
           8503]
 gi|256840069|ref|ZP_05545578.1| ATP-dependent RNA helicase DeaD [Parabacteroides sp. D13]
 gi|298376828|ref|ZP_06986783.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_19]
 gi|149936227|gb|ABR42924.1| ATP-dependent RNA helicase DeaD [Parabacteroides distasonis ATCC
           8503]
 gi|256738999|gb|EEU52324.1| ATP-dependent RNA helicase DeaD [Parabacteroides sp. D13]
 gi|298266706|gb|EFI08364.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_19]
          Length = 421

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 157/377 (41%), Positives = 238/377 (63%), Gaps = 5/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   +  A++  GY  PTPIQ + IP+V Q +D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFEDLDLIEPIRKALVQEGYTTPTPIQSEAIPIVSQGYDLLGCAQTGTGKTAAFSIPII 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               L+K +   R  + LIL PTRELA Q+ ++F  YG+   L   ++ GG+  + Q + 
Sbjct: 61  QRLYLQKKKGYKRGIKALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG D+LI TPGR+LD   +G + ++ +E  V+DEADRMLDMGFI  I+ I  L+P  R
Sbjct: 121 LERGIDILIATPGRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+++++   L  P+++EV   SST + I+      + + ++K  LL+ L
Sbjct: 181 QSLFFSATMPPEIERLAGTILSEPQKVEVTPASSTVDAIDQSVY--FVEKAEKINLLKSL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L++ + +++ +IF   K     +   L K      AIHGN  Q +R + L+NFK+ T ++
Sbjct: 239 LENPE-LESVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+  + HV N+++PN  E Y+HRIGRTGRAGR G AF+    E++  + 
Sbjct: 298 LIATDIAARGIDVDHLTHVINYELPNVPETYVHRIGRTGRAGREGVAFSFCDAEEVPLLK 357

Query: 359 AIEKLIEKKVDWLNGDL 375
            I+KLI K+V    G +
Sbjct: 358 DIQKLIGKEVPIAGGHM 374


>gi|110833595|ref|YP_692454.1| DEAD-box ATP dependent DNA helicase [Alcanivorax borkumensis SK2]
 gi|110646706|emb|CAL16182.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax
           borkumensis SK2]
          Length = 459

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 155/370 (41%), Positives = 230/370 (62%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL   +  AV + GY  P+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MHFSDLGLCDALQAAVAERGYDTPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G  AR    R L+L PTRELAAQVA++   YGKN  LT  ++ GG+    Q ++L
Sbjct: 61  ERLRTGSPARNNQVRALVLTPTRELAAQVAESVATYGKNLPLTSTVVFGGVKINPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR+LD + +  +  +++E+L++DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 121 RGGCDVLVATPGRLLDLYQQNAVKFDHLEVLILDEADRMLDMGFIHDIRKILAKLPPKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT + E++ +++  + +P  ++++  ++T E +            +K ALL  L+
Sbjct: 181 NLMFSATFSSEIRALAKGLVNDPVEVDISPRNTTTELVTQWIAPV--DKKRKPALLTHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q     +  ++F   K     L   LE  G    AIHGN  Q +R + L++FK G ++ +
Sbjct: 239 QENGWFQV-LVFSRTKHGANKLAKQLEANGIEAAAIHGNKSQNARTRALADFKSGKVRAL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N D+PN  E+Y+HRIGRTGRAG  G+A +LV+ ++ + +  
Sbjct: 298 VATDIAARGLDIEQLPQVVNVDLPNVPEDYVHRIGRTGRAGATGQAISLVSADEFQQLKD 357

Query: 360 IEKLIEKKVD 369
           IE+L +++++
Sbjct: 358 IERLTQQQLE 367


>gi|255013488|ref|ZP_05285614.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_7]
          Length = 421

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 157/377 (41%), Positives = 238/377 (63%), Gaps = 5/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   +  A++  GY  PTPIQ + IP+V Q +D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFEDLDLIEPICKALVQEGYTTPTPIQSEAIPIVSQGYDLLGCAQTGTGKTAAFSIPII 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               L+K +   R  + LIL PTRELA Q+ ++F  YG+   L   ++ GG+  + Q + 
Sbjct: 61  QRLYLQKKKGYKRGIKALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG D+LI TPGR+LD   +G + ++ +E  V+DEADRMLDMGFI  I+ I  L+P  R
Sbjct: 121 LERGIDILIATPGRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+++++   L  P+++EV   SST + I+      + + ++K  LL+ L
Sbjct: 181 QSLFFSATMPPEIERLAGTILSEPQKVEVTPASSTVDAIDQSVY--FVEKAEKINLLKSL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L++ + +++ +IF   K     +   L K      AIHGN  Q +R + L+NFK+ T ++
Sbjct: 239 LENPE-LESVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+  + HV N+++PN  E Y+HRIGRTGRAGR G AF+    E++  + 
Sbjct: 298 LIATDIAARGIDVDHLTHVINYELPNVPETYVHRIGRTGRAGREGVAFSFCDAEEVPLLK 357

Query: 359 AIEKLIEKKVDWLNGDL 375
            I+KLI K+V    G +
Sbjct: 358 DIQKLIGKEVPIAGGHM 374


>gi|197335615|ref|YP_002156614.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197317105|gb|ACH66552.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 398

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 161/408 (39%), Positives = 250/408 (61%), Gaps = 18/408 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ A+ + GY  PTPIQ K IP+ L   ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSDPILKAIDELGYKAPTPIQQKAIPVALTGKNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRARVRMPR--TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            IL +   +VR  R   LIL PTRELA QV +N ++Y K+ ++T   + GG+ ++ Q ++
Sbjct: 61  EILSEDSTKVRAKRIRALILTPTRELAIQVEENIQQYSKHIDITSLAMYGGVDYKDQKQR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G DVL+ TPGR+LD + +  +  + ++ILV+DEADRMLDMGFI  I  I   +P  R
Sbjct: 121 LIEGVDVLVATPGRLLDMYTQRAIHFDELDILVLDEADRMLDMGFIEDINKIIERLPLDR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT++D+++ +++  + NP  I ++  ++++  I+     T     KK ALL  L
Sbjct: 181 QNMLFSATLSDQVRYLAKTAINNPIEISISPKTTSSPQIDQWL--TTVDKDKKSALLSHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ ++     +IF   K     L   LEK+     A H    Q +R K+L++FKEG +Q 
Sbjct: 239 IK-ENNWDQALIFIETKHGAAKLVSQLEKRDIRAEAFHSGRSQEARAKVLNDFKEGKLQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+ +AARG+DI ++  V N+D+P  A++Y+HRIGRTGRAG  G+A + V+K+D K++ 
Sbjct: 298 LVATGIAARGIDIDELTRVVNYDLPFPADDYVHRIGRTGRAGAKGEAISFVSKDDFKNLC 357

Query: 359 AIEK-----LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            IE      ++ K+++           P +++ I+  N+  K  P P+
Sbjct: 358 MIESRLGHLIVRKEIEGF--------APRKEVPISILNYKPKRKPAPK 397


>gi|301310161|ref|ZP_07216100.1| putative ATP-dependent RNA helicase RhlE [Bacteroides sp. 20_3]
 gi|300831735|gb|EFK62366.1| putative ATP-dependent RNA helicase RhlE [Bacteroides sp. 20_3]
          Length = 421

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 157/377 (41%), Positives = 238/377 (63%), Gaps = 5/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   +  A++  GY  PTPIQ + IP+V Q +D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFEDLDLIEPIRKALVQEGYTTPTPIQSEAIPIVSQGYDLLGCAQTGTGKTAAFSIPII 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               L+K +   R  + LIL PTRELA Q+ ++F  YG+   L   ++ GG+  + Q + 
Sbjct: 61  QRLYLQKKKGYKRGIKALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG D+LI TPGR+LD   +G + ++ +E  V+DEADRMLDMGFI  I+ I  L+P  R
Sbjct: 121 LERGIDILIATPGRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+++++   L  P+++EV   SST + I+      + + ++K  LL+ L
Sbjct: 181 QSLFFSATMPPEIERLAGTILSEPQKVEVTPASSTVDAIDQSVY--FVEKAEKINLLKSL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L++ + +++ +IF   K     +   L K      AIHGN  Q +R + L+NFK+ T ++
Sbjct: 239 LENPE-LESVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+  + HV N+++PN  E Y+HRIGRTGRAGR G AF+    E++  + 
Sbjct: 298 LIATDIAARGIDVDHLTHVINYELPNVPETYVHRIGRTGRAGREGVAFSFCDAEEVPLLK 357

Query: 359 AIEKLIEKKVDWLNGDL 375
            I+KLI K+V    G +
Sbjct: 358 DIQKLIGKEVPVAGGHM 374


>gi|255534886|ref|YP_003095257.1| ATP-dependent RNA helicase RhlE [Flavobacteriaceae bacterium
           3519-10]
 gi|255341082|gb|ACU07195.1| ATP-dependent RNA helicase RhlE [Flavobacteriaceae bacterium
           3519-10]
          Length = 417

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 155/368 (42%), Positives = 230/368 (62%), Gaps = 3/368 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F DL L   +  A+ + GY +PTPIQ K IP +LQ  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MNFTDLQLIDPIAKALQEEGYTQPTPIQAKAIPSILQGRDLLGTAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R    + LIL PTRELA Q+ ++F  YG++  L   ++ GG+    Q   L+
Sbjct: 61  QNLTEKNIRNNQIKALILTPTRELAIQIEESFNAYGRHLRLRNLVVFGGVKQSGQEAALK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+LD  ++G + + N+EI V+DEADRMLDMGF+  ++ I  L+P  RQT
Sbjct: 121 KGVDILVATPGRLLDFISQGIISLKNLEIFVLDEADRMLDMGFVHDVKRIIKLLPPKRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT  DE+ K++ + L NP ++EV   S+TA+TI+      + +   K  LL  +L 
Sbjct: 181 LFFSATFPDEISKLANSMLTNPVKVEVAPVSATADTIKQKVY--FVEKENKLELLTHILM 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D   + ++F   K     +   L+    S  AIHGN  Q  R   L+NFK G  +++V
Sbjct: 239 N-DISDSVLVFSRTKHGADKIARKLQSHKISAEAIHGNKSQNQRQNALNNFKSGKTRILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++ +V NF++ + +E Y+HRIGRTGRAG  G + + V   D+ ++ + 
Sbjct: 298 ATDIAARGIDIDELKYVVNFELSDVSETYVHRIGRTGRAGADGSSISFVDGLDLVNLKST 357

Query: 361 EKLIEKKV 368
           EKLI KK+
Sbjct: 358 EKLIGKKI 365


>gi|188534378|ref|YP_001908175.1| ATP-dependent RNA helicase RhlE [Erwinia tasmaniensis Et1/99]
 gi|188029420|emb|CAO97297.1| Putative ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99]
          Length = 468

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 161/375 (42%), Positives = 240/375 (64%), Gaps = 14/375 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L       KGR   R  R LIL PTRELAAQ+ +N + Y K  ++   ++ GG+    
Sbjct: 61  QLLSSHNPHPKGR---RPVRALILTPTRELAAQIGENVQDYSKYLDMRSLVVFGGVSINP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G DVL+ TPGR+LD  ++  L ++ +EILV+DEADRMLDMGFI  I+ + + +
Sbjct: 118 QMMKLRGGVDVLVATPGRLLDLEHQNALDLSQVEILVLDEADRMLDMGFIHDIRRVLAKL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCA 233
           P  RQ LLFSAT +DE++ ++E  L NP+++EV   ++ +E + +H  +       K+  
Sbjct: 178 PAKRQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTASEQVTQHVHLVD----KKRKR 233

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L  LL  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + LS+FKE
Sbjct: 234 ELLSLLIGRGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKE 293

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I+++VA+D+AARG+DI ++ HV N+++PN +E+Y+HRIGRTGRA   G+A +LV  ++
Sbjct: 294 GKIRVLVATDIAARGIDIEELPHVVNYELPNVSEDYVHRIGRTGRAAAVGEALSLVCVDE 353

Query: 354 IKHIDAIEKLIEKKV 368
            K +  IE+L+++++
Sbjct: 354 HKLLRDIERLLKREI 368


>gi|261822185|ref|YP_003260291.1| ATP-dependent RNA helicase RhlE [Pectobacterium wasabiae WPP163]
 gi|261606198|gb|ACX88684.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 476

 Score =  306 bits (783), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 164/377 (43%), Positives = 238/377 (63%), Gaps = 16/377 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  PTP+Q + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSADILRAIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TIL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L       KG+ R R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    
Sbjct: 61  QLLTSREAQHKGKGR-RPVRALILTPTRELAAQIDENVKAYSKYLPLRSLVVFGGVSINP 119

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +
Sbjct: 120 QMMKLRGGVDILVATPGRLLDLEHQRAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKL 179

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKK 231
           P  RQ LLFSAT +DE++ ++   L NP  +EV   NTPS       H     +    +K
Sbjct: 180 PAKRQNLLFSATFSDEIKALANKLLTNPASVEVVRRNTPSELVTQHVH-----FVDKRRK 234

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL QL+  ++  +  ++F   K    +L   LEK G +  AIHGN  Q +R + L+NF
Sbjct: 235 RELLSQLI-GENNWQQVLVFTRTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANF 293

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K+G+I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  
Sbjct: 294 KDGSIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCV 353

Query: 352 EDIKHIDAIEKLIEKKV 368
           ++ K +  IE+L+++++
Sbjct: 354 DEHKLLRDIERLLKREI 370


>gi|59712397|ref|YP_205173.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|59480498|gb|AAW86285.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 398

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 161/408 (39%), Positives = 250/408 (61%), Gaps = 18/408 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ A+ + GY  PTPIQ K IP+ L   ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSDPILKAIDELGYKAPTPIQQKAIPVALTGKNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRARVRMPR--TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            IL +   +VR  R   LIL PTRELA QV +N ++Y K+ ++T   + GG+ ++ Q ++
Sbjct: 61  EILSEDPTKVRAKRIRALILTPTRELAIQVEENIQQYSKHIDITSLAMYGGVDYKEQKQR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G DVL+ TPGR+LD + +  +  + ++ILV+DEADRMLDMGFI  I  I   +P  R
Sbjct: 121 LIEGVDVLVATPGRLLDMYTQRAIHFDELDILVLDEADRMLDMGFIEDINKIIERLPLDR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT++D+++ +++  + NP  I ++  ++++  I+     T     KK ALL  L
Sbjct: 181 QNMLFSATLSDQVRYLAKTAINNPIEISISPKTTSSPQIDQWL--TTVDKDKKSALLSHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ ++     +IF   K     L   LEK+     A H    Q +R K+L++FKEG +Q 
Sbjct: 239 IK-ENNWNQALIFIETKHGAAKLVSQLEKRDIRAEAFHSGRSQEARAKVLNDFKEGKLQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+ +AARG+DI ++  V N+D+P  A++Y+HRIGRTGRAG  G+A + V+K+D K++ 
Sbjct: 298 LVATGIAARGIDIDELTRVVNYDLPFPADDYVHRIGRTGRAGAKGEAISFVSKDDFKNLC 357

Query: 359 AIEK-----LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            IE      ++ K+++           P +++ I+  N+  K  P P+
Sbjct: 358 MIESRLGHLIVRKEIEGF--------APRKEVPISILNYKPKRKPTPK 397


>gi|308186129|ref|YP_003930260.1| ATP-dependent RNA helicase rhlE [Pantoea vagans C9-1]
 gi|308056639|gb|ADO08811.1| Putative ATP-dependent RNA helicase rhlE [Pantoea vagans C9-1]
          Length = 456

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 164/374 (43%), Positives = 234/374 (62%), Gaps = 6/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA--RVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L       R R P R LIL PTRELAAQV +N   Y K  +L   ++ GG+    Q  
Sbjct: 61  QKLSATATPIRGRRPVRALILTPTRELAAQVGENVSDYSKYLSLRSLVVFGGVSINPQMV 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD   +  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLAQQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++E  L NP+ IEV   ++ +E +       +    +K  LL Q
Sbjct: 181 RQNLLFSATFSDEIKGLAEKLLTNPEMIEVARRNTASEQVAQQV--HFVDKKRKRELLSQ 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK G I+
Sbjct: 239 LI-GEGNWQQVLVFTRTKHGANHLAEQLGKDGITAAAIHGNKSQGARTRALADFKSGGIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN AE+Y+HRIGRTGRA   G A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGVALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL 371
             IE+L+++++  L
Sbjct: 358 RDIERLLKREIPRL 371


>gi|90410084|ref|ZP_01218101.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90329437|gb|EAS45694.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 420

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 157/362 (43%), Positives = 233/362 (64%), Gaps = 4/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ AV + GY  PTPIQ K IP++L   ++   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSNLGLSDPILKAVAELGYETPTPIQEKAIPVILTGKNLIAAAQTGTGKTASFVLPLL 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +    R +  R LIL PTRELA QV  N  +Y K+ +LT   + GG+ ++ Q ++L
Sbjct: 61  EKFSDMPPIRAKRIRALILVPTRELAVQVDANITQYSKHLSLTSLAMYGGVDYKDQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  L  + +E+LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IDGVDILVATPGRLLDMYTQRALHFDELEVLVLDEADRMLDMGFIEDINKILERLPKERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++D+++ +++  ++ P  I V+  ++T   I+   +       KK ALL  ++
Sbjct: 181 NLLFSATLSDQVRVLAKTAVERPVEISVSPENTTTPKIDQWLITV--DKDKKSALLSHMI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++  K  +IF   K     L   LEK+G    AIHG   Q  R K+L++FK G + L+
Sbjct: 239 K-ENEWKQALIFIQTKHGAAKLVGQLEKRGIVAEAIHGGRSQAVREKLLNDFKSGELGLL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI D+  V N+D+P++A++Y+HRIGRTGRAG  G+A + V+++D +H+ A
Sbjct: 298 VATGIAARGIDIDDLTRVINYDLPDQADDYVHRIGRTGRAGATGEAISFVSRDDFRHLCA 357

Query: 360 IE 361
           IE
Sbjct: 358 IE 359


>gi|262381688|ref|ZP_06074826.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_33B]
 gi|262296865|gb|EEY84795.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_33B]
          Length = 421

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 157/377 (41%), Positives = 238/377 (63%), Gaps = 5/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   +  A++  GY  PTPIQ + IP+V Q +D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFEDLDLIEPICKALVQEGYTTPTPIQSEAIPIVSQGYDLLGCAQTGTGKTAAFSIPII 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               L+K +   R  + LIL PTRELA Q+ ++F  YG+   L   ++ GG+  + Q + 
Sbjct: 61  QRLYLQKKKGYKRGIKALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG D+LI TPGR+LD   +G + ++ +E  V+DEADRMLDMGFI  I+ I  L+P  R
Sbjct: 121 LERGIDILIATPGRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+++++   L  P+++EV   SST + I+      + + ++K  LL+ L
Sbjct: 181 QSLFFSATMPPEIERLAGTILSEPQKVEVTPASSTVDAIDQSVY--FVEKAEKINLLKSL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L++ + +++ +IF   K     +   L K      AIHGN  Q +R + L+NFK+ T ++
Sbjct: 239 LENPE-LESVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+  + HV N+++PN  E Y+HRIGRTGRAGR G AF+    E++  + 
Sbjct: 298 LIATDIAARGIDVDHLTHVINYELPNVPETYVHRIGRTGRAGREGVAFSFCDAEEVPLLK 357

Query: 359 AIEKLIEKKVDWLNGDL 375
            I+KLI K+V    G +
Sbjct: 358 DIQKLIGKEVPVAGGHM 374


>gi|324114364|gb|EGC08333.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
          Length = 453

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 162/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|331656814|ref|ZP_08357776.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA206]
 gi|331682303|ref|ZP_08382922.1| ATP-dependent RNA helicase RhlE [Escherichia coli H299]
 gi|331055062|gb|EGI27071.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA206]
 gi|331079934|gb|EGI51113.1| ATP-dependent RNA helicase RhlE [Escherichia coli H299]
          Length = 453

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|187734531|ref|YP_001876643.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187424583|gb|ACD03862.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 423

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 162/419 (38%), Positives = 249/419 (59%), Gaps = 8/419 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++  + +  Y  PTPIQ   IPL+LQ  D+ G+AQTGTGKTA+F LP++  
Sbjct: 6   FRELGLSAPILRQLENLEYKTPTPIQAACIPLLLQNKDLMGLAQTGTGKTAAFALPLIQQ 65

Query: 63  LEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L +  G+   R  R LIL PTRELAAQ+ +N   Y +  +L+ A++ GG+ + +Q K+L 
Sbjct: 66  LSERSGKPPGRRVRALILSPTRELAAQIHENIRAYARGLHLSTAVIFGGVGYASQFKELA 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGR++DH  R  + ++ +E L++DEAD MLDMGF P ++ I S +P  R T
Sbjct: 126 GGLDILVATPGRLIDHLERRTVSLDGVETLILDEADHMLDMGFAPALKKIVSKIPRKRHT 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSATM D ++++++  LQ P+ + V+ PSSTA+ +E  F+      S+K  L  +LL+
Sbjct: 186 QMFSATMPDNIRQLAQTLLQKPETVRVSPPSSTADRVEQ-FLCMVGSQSEKRLLTLELLK 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+     +IF   +     L   L  + +   AIHG+  Q  R ++L  F+ G   ++V
Sbjct: 245 QQELPGRTLIFTRTRHGADRLASFLSGKDYPASAIHGDKSQGRRERMLREFRSGKTPVLV 304

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV  V N+D+P   E Y+HRIGRT RAG  G+A  L + E+I+    +
Sbjct: 305 ATDIAARGIDVKDVRLVINYDLPEEPEVYVHRIGRTARAGAAGQAIALCSPEEIRKARNV 364

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-KKNYSSQKS 418
            KL+ +    L    SS + P E   + +    R ++P+ +K +   R  +K Y    S
Sbjct: 365 HKLLGR---LLPVHASSASVPAELRAVPEARRKR-SSPMQEKRSAPRREPRKGYGRNGS 419


>gi|26246770|ref|NP_752810.1| ATP-dependent RNA helicase RhlE [Escherichia coli CFT073]
 gi|110641001|ref|YP_668729.1| ATP-dependent RNA helicase RhlE [Escherichia coli 536]
 gi|191174652|ref|ZP_03036132.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli F11]
 gi|227884241|ref|ZP_04002046.1| ATP-dependent RNA helicase RhlE [Escherichia coli 83972]
 gi|300939831|ref|ZP_07154469.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 21-1]
 gi|300992077|ref|ZP_07179779.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 200-1]
 gi|300993271|ref|ZP_07180318.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 45-1]
 gi|301051284|ref|ZP_07198110.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 185-1]
 gi|306812801|ref|ZP_07446994.1| ATP-dependent RNA helicase RhlE [Escherichia coli NC101]
 gi|331646014|ref|ZP_08347117.1| ATP-dependent RNA helicase RhlE [Escherichia coli M605]
 gi|26107169|gb|AAN79353.1|AE016757_257 Putative ATP-dependent RNA helicase rhlE [Escherichia coli CFT073]
 gi|110342593|gb|ABG68830.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 536]
 gi|190905071|gb|EDV64730.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli F11]
 gi|222032528|emb|CAP75267.1| ATP-dependent RNA helicase rhlE [Escherichia coli LF82]
 gi|227838993|gb|EEJ49459.1| ATP-dependent RNA helicase RhlE [Escherichia coli 83972]
 gi|300297043|gb|EFJ53428.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 185-1]
 gi|300305406|gb|EFJ59926.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 200-1]
 gi|300406679|gb|EFJ90217.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 45-1]
 gi|300455363|gb|EFK18856.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 21-1]
 gi|305853564|gb|EFM54003.1| ATP-dependent RNA helicase RhlE [Escherichia coli NC101]
 gi|307552642|gb|ADN45417.1| ATP-dependent RNA helicase [Escherichia coli ABU 83972]
 gi|312945315|gb|ADR26142.1| ATP-dependent RNA helicase RhlE [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315292604|gb|EFU51956.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 153-1]
 gi|320196708|gb|EFW71331.1| ATP-dependent RNA helicase RhlE [Escherichia coli WV_060327]
 gi|324009618|gb|EGB78837.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 57-2]
 gi|330910540|gb|EGH39050.1| ATP-dependent RNA helicase RhlE [Escherichia coli AA86]
 gi|331044766|gb|EGI16893.1| ATP-dependent RNA helicase RhlE [Escherichia coli M605]
          Length = 453

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|325983695|ref|YP_004296097.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
           AL212]
 gi|325533214|gb|ADZ27935.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
          Length = 445

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 167/373 (44%), Positives = 232/373 (62%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA  GLS +++ AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFATFGLSDEIIRAVTERGYTVPTPIQKQAIPAVLTGADLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILE----KGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L     KG +  R P R LIL PTRELAAQV ++   YGK   L+  ++IGG+    Q
Sbjct: 61  HRLSDKSVKGPSTGRPPIRALILVPTRELAAQVEESVRDYGKYLKLSSMMMIGGVNINPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L+   D+L+ TPGR+LDH  +  L ++ IEILV+DEADRMLDMGFI  I+ I +L+P
Sbjct: 121 ITRLKSRVDILVATPGRLLDHVQQKTLSLSQIEILVLDEADRMLDMGFIRDIKKILALLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT +DE++ ++++ L  P  IE    ++ A+ + H  V       +K  LL
Sbjct: 181 KQRQNLLFSATFSDEIRALADSLLNQPALIEAARRNAIADKVTH--VVHPVDRERKRHLL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++ Q      ++F   K     L   L   G    AIHGN  Q +R   L+ FK G+
Sbjct: 239 AHLIK-QHGWSQVLVFTRTKHGANKLAEFLTADGIPALAIHGNKSQTARTTALAKFKTGS 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARG+DI ++ HV NF++P   E+Y+HRIGRTGRAG  G A +LV  +++K
Sbjct: 298 LQVLVATDIAARGIDINELPHVVNFELPQVPEDYVHRIGRTGRAGAEGDAVSLVCVDELK 357

Query: 356 HIDAIEKLIEKKV 368
            + AIEKLI+ ++
Sbjct: 358 LLTAIEKLIKHEL 370


>gi|170683710|ref|YP_001742900.1| ATP-dependent RNA helicase RhlE [Escherichia coli SMS-3-5]
 gi|170521428|gb|ACB19606.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli SMS-3-5]
          Length = 454

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|296533085|ref|ZP_06895723.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
 gi|296266590|gb|EFH12577.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
          Length = 389

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 156/369 (42%), Positives = 226/369 (61%), Gaps = 5/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA LGL+  ++ A+   GY  PTPIQ + IP VL   D+ GIAQTGTGKTA+F LP+L 
Sbjct: 3   DFAALGLAEPLLRALTQEGYTTPTPIQAQAIPHVLAGRDLLGIAQTGTGKTAAFALPVLH 62

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L   K  A     R LIL PTRELA+Q+ DN   YG+   L+ A++ GG+    Q + L
Sbjct: 63  HLADRKAPAPRGGCRALILSPTRELASQIHDNIRAYGRFLGLSSAVIFGGVGARPQVEAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DVL+ TPGR+ DH   G   +  +E+LV+DEAD+MLD GF P ++ ++S++   RQ
Sbjct: 123 RRGVDVLVATPGRLQDHVQTGAAKLQGVEVLVLDEADQMLDRGFWPAVKRLSSVMSKNRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM  E+ K++   L++P ++ V   ++TAE IE   +  +   S+K  LL ++L
Sbjct: 183 TLFFSATMPAEIAKIAAEMLKDPAKVSVTPVATTAERIEQKLI--HIDASQKRVLLSEML 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q  +   ++F   K     +   L   G +  AIHG+  Q  R + L+ F+ G   ++
Sbjct: 241 R-QPGIGRALVFARTKHGADRVTKHLNADGIAAHAIHGDRSQGQRERALAEFRTGRAPIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RG+D+  V HVF FD+P+  E Y+HRIGRT RAG  G+A    A +++  + A
Sbjct: 300 VATDIASRGIDVDGVTHVFQFDLPDTPEAYVHRIGRTARAGASGEAIAFCAPDEVAKLKA 359

Query: 360 IEKLIEKKV 368
           +EKLI  K+
Sbjct: 360 VEKLIAMKI 368


>gi|262396801|ref|YP_003288654.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|269966728|ref|ZP_06180805.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|262340395|gb|ACY54189.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|269828651|gb|EEZ82908.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 430

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 164/408 (40%), Positives = 247/408 (60%), Gaps = 15/408 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P+VV A+ + GY K TPIQ K IP+  + HD+   AQTGTGKTA+F LPM+
Sbjct: 1   MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMI 60

Query: 61  T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +L+  R+  R   R LIL PTRELA Q+ADN + Y K  NL+VA + GG    +Q   
Sbjct: 61  QQLLDSNRSASRKTARALILAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQVAA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H  +G + + ++E LV DEADR+LDMGFI  ++ I   V    
Sbjct: 121 LENGVDILVATPGRLEEHIEQGNVSVAHLEFLVFDEADRILDMGFIHAVRKIMLDVDTDP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L  ++++ L+ PKRIEV   ++TA+T+ H          +K  LL +L
Sbjct: 181 QIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAQTVAHVLYPV--DQERKTELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   K  ++F N K+    +   L+  G      HG+  Q +R + L  FK G  ++
Sbjct: 239 I-GRKNWKQVLVFVNYKETANEVVKELKLDGIKAVVCHGDRAQSARRRALEEFKSGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V +++   + 
Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNRDEELTVV 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPP-----LEKIDIA---QHNHARKNNP 398
            +E LI++++  +  +L+   P      +EK+      ++   R+NNP
Sbjct: 358 QVENLIQQRIRRI--ELAGYEPKQRESYIEKLHSKPAFKNRQGRRNNP 403


>gi|227113019|ref|ZP_03826675.1| ATP-dependent RNA helicase RhlE [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 471

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 163/377 (43%), Positives = 239/377 (63%), Gaps = 16/377 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  PTP+Q + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSADILRAIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TIL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L       KG+ R R  R LIL PTRELAAQ+ +N + Y K  +L   ++ GG+    
Sbjct: 61  QLLTSREAQHKGKGR-RPVRALILTPTRELAAQIDENVKAYSKYLSLRSLVVFGGVSINP 119

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G D+L+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +
Sbjct: 120 QMMKLRGGVDILVATPGRLLDLEHQRAVDLSQVEILVLDEADRMLDMGFIHDIRRVLAKL 179

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKK 231
           P  RQ LLFSAT +DE++ ++   L NP  +EV   NTPS       H     +    +K
Sbjct: 180 PAKRQNLLFSATFSDEIKALANKLLTNPASVEVVRRNTPSELVTQHVH-----FVDKRRK 234

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL QL+  ++  +  ++F   K    +L   LEK G +  AIHGN  Q +R + L+NF
Sbjct: 235 RELLSQLI-GENNWQQVLVFTRTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANF 293

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K+G+I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  
Sbjct: 294 KDGSIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCV 353

Query: 352 EDIKHIDAIEKLIEKKV 368
           ++ K +  IE+L+++++
Sbjct: 354 DEHKLLRDIERLLKREI 370


>gi|124383654|ref|YP_001028341.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
 gi|124291674|gb|ABN00943.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
          Length = 488

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 164/375 (43%), Positives = 236/375 (62%), Gaps = 10/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L     + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            +K  LL 
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR---HGKAFTLVAKED 353
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGR GR   +G+A +LV  ++
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRTGRAGANGEAVSLVCVDE 357

Query: 354 IKHIDAIEKLIEKKV 368
            + +  IE+LI++++
Sbjct: 358 KQLLRDIERLIKREI 372


>gi|309776780|ref|ZP_07671754.1| ATP-dependent RNA helicase RhlE [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915528|gb|EFP61294.1| ATP-dependent RNA helicase RhlE [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 438

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 164/431 (38%), Positives = 254/431 (58%), Gaps = 23/431 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L ++  ++ A+ + GY+ PTPIQ + IP  LQ  D+ G AQTGTGKTA+F +P +
Sbjct: 1   MKFQTLNITEPILKAINEQGYLTPTPIQEQAIPYALQGRDILGCAQTGTGKTAAFSIPTI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L   R   R  R+LI+ PTRELA Q+ +N   Y K+  +  A++ GG+P + Q + L+
Sbjct: 61  QLL--NRHEKRYIRSLIVTPTRELAIQIQENICAYAKHTGIRSAVIFGGVPQKPQERILK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGR+ D   +G + +  IEI ++DEADRMLDMGF+P ++ + + +P  +QT
Sbjct: 119 AGVDILVATPGRLNDLIQQGIVDIGRIEIFILDEADRMLDMGFLPDVKRLIAKLPKKKQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++ ++E+ L+NP  IEV   ++T E I+      Y         L   L 
Sbjct: 179 LFFSATMPKEIRALAESLLKNPISIEVTPAATTVEKIDQTL---YYVDKANKKRLLLKLL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++ ++N ++F   K N   L   L + G +   IHGN  Q +R + L  FKEG  +++V
Sbjct: 236 NKNRVQNALVFTRTKSNANRLAKYLNEAGVAAGVIHGNKSQNARQQALLQFKEGKSRVLV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HVFN+D+PN AE Y+HRIGRTGRAGR G A       + ++I +I
Sbjct: 296 ATDIAARGIDVQELSHVFNYDIPNEAEVYVHRIGRTGRAGRQGTAIAFSDINEAEYIKSI 355

Query: 361 EKLI--------EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK-- 410
           EKLI        +++    N ++S+  P        Q +  +++ P    S G ++R+  
Sbjct: 356 EKLIRMRIPVQEDREFPMRNMEVSAPTP--------QQHKRKRSTPSKSASNGNEKRRAA 407

Query: 411 KNYSSQKSHIP 421
              +SQK   P
Sbjct: 408 SAKASQKPAAP 418


>gi|260854088|ref|YP_003227979.1| RNA helicase RhlE [Escherichia coli O26:H11 str. 11368]
 gi|257752737|dbj|BAI24239.1| RNA helicase RhlE [Escherichia coli O26:H11 str. 11368]
 gi|323155682|gb|EFZ41853.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli EPECa14]
          Length = 454

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|157155652|ref|YP_001461987.1| ATP-dependent RNA helicase RhlE [Escherichia coli E24377A]
 gi|193064450|ref|ZP_03045531.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E22]
 gi|194428200|ref|ZP_03060743.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B171]
 gi|256021133|ref|ZP_05434998.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9]
 gi|260843040|ref|YP_003220818.1| RNA helicase RhlE [Escherichia coli O103:H2 str. 12009]
 gi|293433058|ref|ZP_06661486.1| ATP-dependent RNA helicase RhlE [Escherichia coli B088]
 gi|300824257|ref|ZP_07104374.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 119-7]
 gi|331676532|ref|ZP_08377228.1| ATP-dependent RNA helicase RhlE [Escherichia coli H591]
 gi|332282359|ref|ZP_08394772.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9]
 gi|157077682|gb|ABV17390.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Escherichia coli
           E24377A]
 gi|192928912|gb|EDV82525.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E22]
 gi|194413760|gb|EDX30039.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B171]
 gi|257758187|dbj|BAI29684.1| RNA helicase RhlE [Escherichia coli O103:H2 str. 12009]
 gi|291323877|gb|EFE63299.1| ATP-dependent RNA helicase RhlE [Escherichia coli B088]
 gi|300523231|gb|EFK44300.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 119-7]
 gi|320198986|gb|EFW73583.1| ATP-dependent RNA helicase RhlE [Escherichia coli EC4100B]
 gi|323159727|gb|EFZ45705.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli E128010]
 gi|323185047|gb|EFZ70413.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1357]
 gi|323947045|gb|EGB43058.1| DEAD/DEAH box helicase [Escherichia coli H120]
 gi|331075221|gb|EGI46519.1| ATP-dependent RNA helicase RhlE [Escherichia coli H591]
 gi|332104711|gb|EGJ08057.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9]
          Length = 454

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|304409413|ref|ZP_07391033.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307303771|ref|ZP_07583524.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304351931|gb|EFM16329.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306912669|gb|EFN43092.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 411

 Score =  306 bits (783), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 176/410 (42%), Positives = 246/410 (60%), Gaps = 20/410 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L+  +V  +   GY  PTPIQ++ IP +L + DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFSVLSLNSTLVNTLASLGYESPTPIQLEAIPAILAKRDVMAGAQTGTGKTAAFALPIL 60

Query: 61  ------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                 + L++  A VR  R L+L PTRELA QV  +F KY K  ++ V +  GG+  +A
Sbjct: 61  HHLLALSPLQELTA-VRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDA 119

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q      G DVLI TPGR+LDH  +G L +  + +LV DEADRMLDMGF+  IQ +   V
Sbjct: 120 QVAVFNAGIDVLIATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQV 179

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQTLLFSAT+   +  +S+  L++PK IEV   ++TA  IE    A  A   +K  L
Sbjct: 180 PSDRQTLLFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDA--DRKTEL 237

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +  L++S++     +IF   K+ V  L   L K      A HG++ Q +R K+L  FK+G
Sbjct: 238 VSHLVRSKN-WHQVLIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQG 296

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            IQ++VA+D+AARGLDI ++ +V NF++P  AE+YIHRIGRTGRAG  G A TL ++ED 
Sbjct: 297 KIQVLVATDVAARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDA 356

Query: 355 KHIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
             ++ +E +++K++   WL G      P   K+D       R+N    QK
Sbjct: 357 LLLEEVEVVLDKRLPQQWLPG----FEPDFNKMD----TEPRRNGKAAQK 398


>gi|254294585|ref|YP_003060608.1| DEAD/DEAH box helicase [Hirschia baltica ATCC 49814]
 gi|254043116|gb|ACT59911.1| DEAD/DEAH box helicase domain protein [Hirschia baltica ATCC 49814]
          Length = 769

 Score =  306 bits (783), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 158/371 (42%), Positives = 234/371 (63%), Gaps = 11/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L+  V+ A+   GY  PTPIQ + IPLV++  D+ GIAQTGTGKTA+F LP+L  
Sbjct: 4   FSDFDLASPVLKALDKEGYETPTPIQAQAIPLVMEGGDILGIAQTGTGKTAAFALPLLHH 63

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L K     G   VR    L++ PTRELA+Q+A+ F KYG+  +L V  + GG+P   Q +
Sbjct: 64  LCKLPDMPGPGAVR---CLVIAPTRELASQIAEAFSKYGQCLSLRVLKVFGGVPIRKQMR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RGADVL+ TPGR++D   +G + ++ +E LV+DEAD+MLD+GFI  ++ I + VP  
Sbjct: 121 DLHRGADVLVATPGRLIDLMEQGAVDLSYVEKLVLDEADQMLDLGFIHPLRRIAAAVPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL FSATM   +  ++  FL NPK++ +   S+TAE +      ++   ++K  LL  
Sbjct: 181 RQTLFFSATMPSNVSGLANQFLTNPKKVSIAQESTTAERVTQTM--SHVNQAQKGPLLLV 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            LQ + ++   ++F   K     +   L   G    AIHGN  Q  R + L+ F+ G  +
Sbjct: 239 NLQDE-SIDRALVFTRTKHGADKVVSKLMNAGIRCGAIHGNKSQAQRERALNAFRNGDSK 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+P V HVFN+++PN  E Y+HRIGRT RAGR GKA + V++++ K++
Sbjct: 298 VLVATDIAARGIDVPGVSHVFNYEIPNVPEQYVHRIGRTARAGREGKAISFVSRDEKKYL 357

Query: 358 DAIEKLIEKKV 368
             I++ I  K+
Sbjct: 358 LDIQRQIRMKI 368


>gi|331651800|ref|ZP_08352819.1| ATP-dependent RNA helicase RhlE [Escherichia coli M718]
 gi|331050078|gb|EGI22136.1| ATP-dependent RNA helicase RhlE [Escherichia coli M718]
          Length = 454

 Score =  306 bits (783), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|301646226|ref|ZP_07246122.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 146-1]
 gi|301075563|gb|EFK90369.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 146-1]
          Length = 446

 Score =  305 bits (782), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|300947123|ref|ZP_07161337.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300453201|gb|EFK16821.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
          Length = 433

 Score =  305 bits (782), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|256821317|ref|YP_003145280.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256794856|gb|ACV25512.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 434

 Score =  305 bits (782), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 162/370 (43%), Positives = 226/370 (61%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L   ++ A+  +GY  P+PIQ K IPL+L   DV   AQTGTGKTA F LP+L
Sbjct: 1   MPFSKLDLIQPLLDALHKSGYKTPSPIQQKVIPLILNGQDVMAAAQTGTGKTAGFSLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G R      R LIL PTRELA QV  + +KY  N +L   ++ GG+    Q  KL
Sbjct: 61  QRLSEGKRPSANSARCLILTPTRELAEQVHQSVQKYAANLHLNSIVVYGGVKINPQMLKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DVL+ TPGR+LD   +  +  N++E LV+DEADRMLDMGF+P I+ I   +P  RQ
Sbjct: 121 RRGTDVLVATPGRLLDLMEQNAVRFNDLEFLVLDEADRMLDMGFLPSIKRIIGKLPKKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT ++ ++ +S+ FL NP  +E    ++TA T++           +K ALL  L+
Sbjct: 181 TLLFSATFSESIKAISQQFLTNPSLVETEQTNTTAATVKQWIHPV--DKKQKPALLSYLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++F   ++    L   LEK+G    AIHG   Q +R + LS FK G + ++
Sbjct: 239 -GHHRWDQLLVFVRTRRGANKLSVDLEKRGIKATAIHGGKSQGARNRALSEFKSGKVTVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+D+PN AE+Y+HRIGRTGRAG  G A +LV+ +++  + A
Sbjct: 298 VATDVAARGLDIEQMPLVINYDLPNVAEDYVHRIGRTGRAGEKGTAISLVSADEVDDLRA 357

Query: 360 IEKLIEKKVD 369
           I+ LI K ++
Sbjct: 358 IQDLIRKPLE 367


>gi|117622979|ref|YP_851892.1| ATP-dependent RNA helicase RhlE [Escherichia coli APEC O1]
 gi|115512103|gb|ABJ00178.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli APEC O1]
          Length = 453

 Score =  305 bits (782), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|325498031|gb|EGC95890.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ECD227]
          Length = 453

 Score =  305 bits (782), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKNLAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|226228176|ref|YP_002762282.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
 gi|226091367|dbj|BAH39812.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
          Length = 374

 Score =  305 bits (782), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 161/369 (43%), Positives = 227/369 (61%), Gaps = 8/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGL+  ++ A+ DAGY +PTPIQ + IPL L   D+ G+AQTGTGKTASF LP++
Sbjct: 1   MTFADLGLARPLLDALHDAGYERPTPIQREAIPLALLGRDLIGLAQTGTGKTASFTLPVV 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  G  R R+   L+L PTREL  QV ++  KY     + V  + GG+ +E Q K L 
Sbjct: 61  HRLLGGPRRTRV---LVLTPTRELCLQVEESVRKYSSRSPVDVIPVYGGVGYEPQEKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR+LDH  +  +    +E LV+DEADRMLDMGF P I  I   +P  RQT
Sbjct: 118 RGVDVVVATPGRLLDHLEKRNVDFTYLETLVLDEADRMLDMGFAPQINRIVDQIPRYRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLL 239
           LLFSATM  E++ +   +L+ P  ++V   SS A T+ H   A Y     +K  LL  LL
Sbjct: 178 LLFSATMPPEVEALGRKYLRKPVVVQVGRRSSAATTVTH---AVYPVPRHRKNELLVHLL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + D  ++ ++F   K     +   L +      A+H +  QR R++ L +FK G ++++
Sbjct: 235 TNSD-HESVLVFTRTKSGADRVVSDLAQAKIHAGAMHADKSQRERIQALEDFKSGKLRVL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A RGLDI  + HV NFDVP + E+Y+HRIGRTGRA   G A+T ++ E+I  +  
Sbjct: 294 VATDIAQRGLDISGITHVINFDVPQQPEDYVHRIGRTGRAASTGDAYTFMSAEEIGMVRT 353

Query: 360 IEKLIEKKV 368
           IE+ I +++
Sbjct: 354 IERTIGQEI 362


>gi|91228785|ref|ZP_01262694.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
 gi|91187660|gb|EAS73983.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
          Length = 430

 Score =  305 bits (782), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 164/408 (40%), Positives = 247/408 (60%), Gaps = 15/408 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P+VV A+ + GY K TPIQ K IP+  + HD+   AQTGTGKTA+F LPM+
Sbjct: 1   MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMI 60

Query: 61  T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +L+  R+  R   R LIL PTRELA Q+ADN + Y K  NL+VA + GG    +Q   
Sbjct: 61  QQLLDSNRSASRKTARALILAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQVTA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H  +G + + ++E LV DEADR+LDMGFI  ++ I   V    
Sbjct: 121 LENGVDILVATPGRLEEHIEQGNVSVAHLEFLVFDEADRILDMGFIHAVRKIMLDVDTDP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L  ++++ L+ PKRIEV   ++TA+T+ H          +K  LL +L
Sbjct: 181 QIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAQTVAHVLYPV--DQERKTELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   K  ++F N K+    +   L+  G      HG+  Q +R + L  FK G  ++
Sbjct: 239 I-GRKNWKQVLVFVNYKETANEVVKELKLDGIKAVVCHGDRAQSARRRALEEFKSGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V +++   + 
Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNRDEELTVV 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPP-----LEKIDIA---QHNHARKNNP 398
            +E LI++++  +  +L+   P      +EK+      ++   R+NNP
Sbjct: 358 QVENLIQQRIRRI--ELAGYEPKQRESYIEKLHSKPAFKNRQGRRNNP 403


>gi|59711751|ref|YP_204527.1| DNA and RNA helicase [Vibrio fischeri ES114]
 gi|59479852|gb|AAW85639.1| DNA and RNA helicase [Vibrio fischeri ES114]
          Length = 431

 Score =  305 bits (782), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 172/429 (40%), Positives = 254/429 (59%), Gaps = 12/429 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P++V A+ + GY K TPIQ K IPL  + HD+   AQTGTGKTA+F LP++
Sbjct: 1   MSFSSQGFAPEIVKALTECGYQKLTPIQQKAIPLARKGHDILANAQTGTGKTAAFALPVI 60

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L   K  A  R  R LIL PTRELA Q+A N   Y K  +LTV  + GG    +Q + 
Sbjct: 61  QQLLDSKKSATRRTARALILAPTRELAEQIAVNIADYIKYTSLTVTSVFGGKKMSSQERA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H     + + N+E LV DEADRMLDMGF+  I+NI   V  + 
Sbjct: 121 LEPGVDILVATPGRLQEHIEEENVSIANLEFLVFDEADRMLDMGFVNAIRNIMMEVNTSP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT + ++ K++ + L+ PKRI V+  ++TA TI H  V       +K  LL +L
Sbjct: 181 QIMLFSATSSAQMNKLASDILRKPKRISVDPENTTASTIAH--VVYPVDEERKTELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F N K+    +   L+  G      HG+  Q +R + L  FKEG  ++
Sbjct: 239 I-GRKNWQQVLVFVNYKETANEIVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+   + 
Sbjct: 298 MVATDVAARGLDIADLPHVINYDMPFLAEDYVHRIGRTGRAGKKGHAVSFVSREEELTVV 357

Query: 359 AIEKLIE---KKVDWLNGDLSSLNPPLEKIDIA---QHNHARKNNPIPQKSTGFDR-RKK 411
            +E LI+   ++V+    +  + +  ++K++     ++   R NNP   +S+   R R K
Sbjct: 358 QVETLIQQRIRRVEQPGYEPKNRDAYIDKVNTKSAFKNRKGRTNNPNEDQSSAERRMRLK 417

Query: 412 NYSSQKSHI 420
           N    K+ I
Sbjct: 418 NVIQNKARI 426


>gi|301020713|ref|ZP_07184781.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 69-1]
 gi|300398524|gb|EFJ82062.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 69-1]
          Length = 452

 Score =  305 bits (782), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|281177933|dbj|BAI54263.1| putative ATP-dependent RNA helicase [Escherichia coli SE15]
          Length = 453

 Score =  305 bits (782), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|255038837|ref|YP_003089458.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254951593|gb|ACT96293.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 383

 Score =  305 bits (782), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 160/378 (42%), Positives = 231/378 (61%), Gaps = 12/378 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   +  A+ + GY  PTPIQ K IP++L+  D+ G AQTGTGKTA+F +PML
Sbjct: 1   MTFQDLKLIEPIKKALQEEGYTTPTPIQSKAIPVILETKDLLGCAQTGTGKTAAFAIPML 60

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L +       R+R+R    LIL PTRELA Q+ ++F  YG+   +   ++ GG+  + 
Sbjct: 61  QLLHENPVGKFERSRIR---ALILTPTRELAIQIGESFAAYGRYTRVRHTVIFGGVGQKP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L +G DVLI TPGR+LD  N+G + +N +E  V+DEADRMLDMGF+  ++ +  L+
Sbjct: 118 QTDALAKGVDVLIATPGRLLDLINQGFIKLNQLEFFVLDEADRMLDMGFVHDVKKVIKLL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ+L FSATM   +  ++   L+NP ++EV   SSTA+TI       +   S K +L
Sbjct: 178 PGKRQSLFFSATMPPAIVTLAGTILRNPVKVEVTPVSSTADTIRQSVF--FVDKSNKNSL 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  +LQ + ++   ++F   K     +   L K G +  AIHGN  Q +R   L NFK  
Sbjct: 236 LLHILQDE-SIATALVFTRTKHGADKVVKVLRKAGVTSEAIHGNKSQTARQNALKNFKNQ 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           T +++VA+D+AARG+D+ D+ HV N+++PN  E Y+HRIGRTGRAG  G A +   KE+ 
Sbjct: 295 TTRVLVATDIAARGIDVDDLTHVINYEIPNIPETYVHRIGRTGRAGAKGIALSFCDKEEK 354

Query: 355 KHIDAIEKLIEKKVDWLN 372
            ++  I KLI K +  +N
Sbjct: 355 PYLKDIHKLIAKNIPVVN 372


>gi|91209829|ref|YP_539815.1| ATP-dependent RNA helicase RhlE [Escherichia coli UTI89]
 gi|218557702|ref|YP_002390615.1| ATP-dependent RNA helicase RhlE [Escherichia coli S88]
 gi|218688583|ref|YP_002396795.1| ATP-dependent RNA helicase RhlE [Escherichia coli ED1a]
 gi|237707244|ref|ZP_04537725.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 3_2_53FAA]
 gi|91071403|gb|ABE06284.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli UTI89]
 gi|218364471|emb|CAR02153.1| RNA helicase [Escherichia coli S88]
 gi|218426147|emb|CAR06967.1| RNA helicase [Escherichia coli ED1a]
 gi|226898454|gb|EEH84713.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 3_2_53FAA]
 gi|294493052|gb|ADE91808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Escherichia coli
           IHE3034]
 gi|307627793|gb|ADN72097.1| ATP-dependent RNA helicase RhlE [Escherichia coli UM146]
 gi|323958086|gb|EGB53795.1| DEAD/DEAH box helicase [Escherichia coli H263]
          Length = 453

 Score =  305 bits (782), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|323976817|gb|EGB71905.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
          Length = 454

 Score =  305 bits (782), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKNLAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|218699169|ref|YP_002406798.1| ATP-dependent RNA helicase RhlE [Escherichia coli IAI39]
 gi|218369155|emb|CAR16910.1| RNA helicase [Escherichia coli IAI39]
          Length = 453

 Score =  305 bits (782), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKNLAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|315299273|gb|EFU58525.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 16-3]
          Length = 446

 Score =  305 bits (782), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|120598117|ref|YP_962691.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|146293812|ref|YP_001184236.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|120558210|gb|ABM24137.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145565502|gb|ABP76437.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 413

 Score =  305 bits (782), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 172/406 (42%), Positives = 247/406 (60%), Gaps = 14/406 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L+  +V  + + GY  PTPIQ + IP++L + DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFSSLSLNTTLVNTITELGYSLPTPIQSEAIPVILAKQDVMAGAQTGTGKTAAFALPIL 60

Query: 61  TIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +L     E+   RV+  + L+L PTRELA QV  +F KY KN ++ + +  GG+  +AQ
Sbjct: 61  HLLMAKNVEQKAERVKTVQALVLVPTRELAVQVHQSFVKYAKNTDIRIGIAYGGVSIDAQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
               + G DVLI TPGR+LDH  +G L +N +  LV DEADRMLDMGF+  I  +   VP
Sbjct: 121 VDVFKTGIDVLIATPGRLLDHLRQGVLNLNQLSTLVFDEADRMLDMGFMDEINAVLKQVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT+ D + ++S++ L+ PK IEV   ++TA  +E    A  +   +K   +
Sbjct: 181 KDRQTLLFSATLDDAIFELSKSLLREPKLIEVTKRNTTAAQVEQRVYAIDS--DRKTEFV 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++S +     +IF   K+ V  L   L K      A HG++ Q +R K+L  FK G 
Sbjct: 239 SHLIRS-NYWHQVLIFSRTKQGVDRLVQQLNKLSIVTHAFHGDLSQGAREKVLQAFKLGN 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           IQ++VA+D+AARGLDI ++ +V NF++P  AE+YIHRIGRTGRAG  G A TL ++ED  
Sbjct: 298 IQVLVATDVAARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDTL 357

Query: 356 HIDAIEKLIEKKV--DWLNG---DLSSLNP-PLEKIDIAQHNHARK 395
            ++ +E +++K++   W  G   D + + P P      AQ   A+K
Sbjct: 358 LLEEVEVVLDKRLPQQWYPGFEPDFNKMEPEPRRNGKAAQKQRAKK 403


>gi|322420867|ref|YP_004200090.1| DEAD/DEAH box helicase domain-containing protein [Geobacter sp.
           M18]
 gi|320127254|gb|ADW14814.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18]
          Length = 467

 Score =  305 bits (782), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 163/418 (38%), Positives = 243/418 (58%), Gaps = 25/418 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF    L PKV   V   GY+ PTPIQ++ IP V+   DV G+AQTGTGKTA+F LP+L
Sbjct: 1   MDFKQFNLHPKVQAGVEAVGYLTPTPIQLQAIPPVMAGQDVLGLAQTGTGKTAAFGLPVL 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++E GR +VR    L+L PTRELA Q+ ++     +   L    + GG+    Q KKL
Sbjct: 61  HRLVEGGRGQVR---ALVLAPTRELAEQINESLNALAQQTRLKSITVYGGVNINTQIKKL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D+++  PGR+LDH ++G + ++ +E+LV+DEAD+M DMGF+P ++ I   +P  RQ
Sbjct: 118 KEGTDIVVACPGRLLDHISQGTVNLSKVEVLVLDEADQMFDMGFLPDVRKILRALPGKRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM D++++++   L  P  ++V+  ++ A T+ H           K  LL +LL
Sbjct: 178 NLMFSATMPDDIRRLAHEILCRPVTVQVSR-TAPAATVSHALYPVGQHL--KTPLLFELL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  DT ++ +IF   K     +   LEK G+   ++ GN+ Q  R   L  F++GT Q+M
Sbjct: 235 KHTDT-ESVLIFTKTKHRAKRVGEQLEKSGYKATSLQGNLSQNRRQAALDGFRDGTYQIM 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HV N+D+P+  E Y HRIGRTGRA + G AFT+V  ED   + +
Sbjct: 294 VATDIAARGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTGEDEAMVRS 353

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE+++  K++            LE  D A         P PQK   F R  +    +K
Sbjct: 354 IERVLGAKIERRR---------LEGFDYAV--------PAPQKDAEFARAPREPQRRK 394


>gi|215485885|ref|YP_002328316.1| ATP-dependent RNA helicase RhlE [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312969182|ref|ZP_07783389.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2362-75]
 gi|215263957|emb|CAS08297.1| RNA helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|312286584|gb|EFR14497.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2362-75]
          Length = 453

 Score =  305 bits (782), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TIL--EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L   +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QYLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|332637958|ref|ZP_08416821.1| putative ATP-dependent RNA helicase [Weissella cibaria KACC 11862]
          Length = 524

 Score =  305 bits (782), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 154/368 (41%), Positives = 234/368 (63%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+   GYV+ TPIQ +TIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLSQDLLTAIEKHGYVEATPIQEQTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++    +V+    L++ PTRELA Q  D   K G++  + V  + GG     Q   L 
Sbjct: 61  NMIDTDSNQVQ---ALVVSPTRELAIQTQDELFKLGRDKRVKVQAVFGGADIRRQINGLS 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR++DH NRG + ++N++ LV+DEAD ML+MGF+  I++I   VP  RQT
Sbjct: 118 HGAHIVVGTPGRLIDHINRGTINLSNVKTLVLDEADEMLNMGFLEDIESILKAVPDQRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+  P+ I++     T + +E  +V    +  +K   L  +L 
Sbjct: 178 LLFSATMPPAIKRIGVQFMTEPEHIQIAAKELTTDLVEQYYV--RVRDFEKFDTLTHILD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   K  I+F   K+ V  L   LE +GF+   IHG++ Q+ R ++L  FK G I+++V
Sbjct: 236 VQQP-KLAIMFGRTKRRVDELTRGLELRGFNAAGIHGDLTQQKRSQVLKQFKNGEIKILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V +V+NFD+P  +E+Y+HRIGRTGRAG HG + T ++  ++ ++  I
Sbjct: 295 ATDVAARGLDVSGVDYVYNFDIPQDSESYVHRIGRTGRAGAHGTSVTFISNAEMDYLKDI 354

Query: 361 EKLIEKKV 368
           EKL +K++
Sbjct: 355 EKLTKKRM 362


>gi|290474026|ref|YP_003466900.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Xenorhabdus bovienii SS-2004]
 gi|289173333|emb|CBJ80110.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Xenorhabdus bovienii SS-2004]
          Length = 459

 Score =  305 bits (782), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 170/428 (39%), Positives = 262/428 (61%), Gaps = 13/428 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LGL   ++ AV + GYV+PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MNFESLGLKADILRAVEEQGYVEPTPIQQQAIPVVLSGKDLLASAQTGTGKTAGFTLPIL 60

Query: 61  TILEK--GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L +   +A+ R P R LIL PTRELAAQV +N   Y K   L   ++ GG+    Q  
Sbjct: 61  QLLSESPAQAKGRRPVRALILTPTRELAAQVGENVCNYSKYLRLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++++EIL++DEADRMLDMGFI  I+ + S +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVDLSHVEILILDEADRMLDMGFIHDIRRVLSKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++   L++P  IEV   +S +E I+      +    +K  LL  
Sbjct: 181 RQNLLFSATFSDDIKSLANKLLRDPVSIEVARRNSASEQIDQAV--HFVDKKRKGELLSY 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++ +Q+  +  ++F   K     L   L + G +  AIHGN  Q +R + L++FK G I+
Sbjct: 239 MIGNQN-WQQVLVFTRTKHGANRLAEQLSQDGVTAAAIHGNKSQGARTRALADFKSGRIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI  + HV NF++PN AE+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 ALVATDIAARGLDIDQLPHVVNFELPNVAEDYVHRIGRTGRAEATGQAISLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-------KNNPIPQKSTGFDRRK 410
             IE+L+++++  +       +P ++   I   +++R       + +P  Q S+  +R  
Sbjct: 358 HDIERLLKREIPRIAISGYDPDPSIKAEPILNGSNSRGSQRGNGRQSPSNQGSSKPNRSN 417

Query: 411 KNYSSQKS 418
           ++ S+Q S
Sbjct: 418 QSRSNQGS 425


>gi|15800548|ref|NP_286560.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 EDL933]
 gi|15830129|ref|NP_308902.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           Sakai]
 gi|168752016|ref|ZP_02777038.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4113]
 gi|168756582|ref|ZP_02781589.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4401]
 gi|168764299|ref|ZP_02789306.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4501]
 gi|168767298|ref|ZP_02792305.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4486]
 gi|168777223|ref|ZP_02802230.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4196]
 gi|168779341|ref|ZP_02804348.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4076]
 gi|168787011|ref|ZP_02812018.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC869]
 gi|168799929|ref|ZP_02824936.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC508]
 gi|195936837|ref|ZP_03082219.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808862|ref|ZP_03251199.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4206]
 gi|208814983|ref|ZP_03256162.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4045]
 gi|208822342|ref|ZP_03262661.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4042]
 gi|209396359|ref|YP_002269466.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4115]
 gi|217324654|ref|ZP_03440738.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. TW14588]
 gi|254791991|ref|YP_003076828.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           TW14359]
 gi|261225444|ref|ZP_05939725.1| RNA helicase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258587|ref|ZP_05951120.1| RNA helicase [Escherichia coli O157:H7 str. FRIK966]
 gi|291281794|ref|YP_003498612.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
           CB9615]
 gi|293414075|ref|ZP_06656724.1| ATP-dependent RNA helicase RhlE [Escherichia coli B185]
 gi|12513789|gb|AAG55168.1|AE005260_7 putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
           EDL933]
 gi|13360334|dbj|BAB34298.1| putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
           Sakai]
 gi|187767485|gb|EDU31329.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4196]
 gi|188014049|gb|EDU52171.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4113]
 gi|189002895|gb|EDU71881.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4076]
 gi|189356291|gb|EDU74710.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4401]
 gi|189363536|gb|EDU81955.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4486]
 gi|189365692|gb|EDU84108.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4501]
 gi|189373064|gb|EDU91480.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC869]
 gi|189377707|gb|EDU96123.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC508]
 gi|208728663|gb|EDZ78264.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4206]
 gi|208731631|gb|EDZ80319.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4045]
 gi|208737827|gb|EDZ85510.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4042]
 gi|209157759|gb|ACI35192.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4115]
 gi|209775908|gb|ACI86266.1| putative ATP-dependent RNA helicase [Escherichia coli]
 gi|209775910|gb|ACI86267.1| putative ATP-dependent RNA helicase [Escherichia coli]
 gi|209775912|gb|ACI86268.1| putative ATP-dependent RNA helicase [Escherichia coli]
 gi|209775914|gb|ACI86269.1| putative ATP-dependent RNA helicase [Escherichia coli]
 gi|209775916|gb|ACI86270.1| putative ATP-dependent RNA helicase [Escherichia coli]
 gi|217320875|gb|EEC29299.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. TW14588]
 gi|254591391|gb|ACT70752.1| RNA helicase [Escherichia coli O157:H7 str. TW14359]
 gi|290761667|gb|ADD55628.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
           CB9615]
 gi|291434133|gb|EFF07106.1| ATP-dependent RNA helicase RhlE [Escherichia coli B185]
 gi|320192728|gb|EFW67369.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           EC1212]
 gi|320637659|gb|EFX07451.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           G5101]
 gi|320642785|gb|EFX11986.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str.
           493-89]
 gi|320648241|gb|EFX16896.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str. H
           2687]
 gi|320654078|gb|EFX22146.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320659701|gb|EFX27257.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320664171|gb|EFX31322.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326338317|gb|EGD62146.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           1125]
 gi|326346295|gb|EGD70033.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           1044]
          Length = 455

 Score =  305 bits (782), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|16128765|ref|NP_415318.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89107648|ref|AP_001428.1| RNA helicase [Escherichia coli str. K-12 substr. W3110]
 gi|170020847|ref|YP_001725801.1| ATP-dependent RNA helicase RhlE [Escherichia coli ATCC 8739]
 gi|170080456|ref|YP_001729776.1| RNA helicase [Escherichia coli str. K-12 substr. DH10B]
 gi|188494973|ref|ZP_03002243.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 53638]
 gi|191166178|ref|ZP_03028012.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B7A]
 gi|194433132|ref|ZP_03065414.1| putative ATP-dependent RNA helicase RhlE [Shigella dysenteriae
           1012]
 gi|194438467|ref|ZP_03070557.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 101-1]
 gi|209918043|ref|YP_002292127.1| ATP-dependent RNA helicase RhlE [Escherichia coli SE11]
 gi|218553381|ref|YP_002386294.1| ATP-dependent RNA helicase RhlE [Escherichia coli IAI1]
 gi|218694271|ref|YP_002401938.1| ATP-dependent RNA helicase RhlE [Escherichia coli 55989]
 gi|238900056|ref|YP_002925852.1| RNA helicase [Escherichia coli BW2952]
 gi|253774200|ref|YP_003037031.1| ATP-dependent RNA helicase RhlE [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160874|ref|YP_003043982.1| ATP-dependent RNA helicase RhlE [Escherichia coli B str. REL606]
 gi|256023607|ref|ZP_05437472.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 4_1_40B]
 gi|297521312|ref|ZP_06939698.1| ATP-dependent RNA helicase RhlE [Escherichia coli OP50]
 gi|300816442|ref|ZP_07096664.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 107-1]
 gi|300907124|ref|ZP_07124790.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 84-1]
 gi|300920043|ref|ZP_07136502.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 115-1]
 gi|300922820|ref|ZP_07138906.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 182-1]
 gi|300929402|ref|ZP_07144871.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 187-1]
 gi|301303551|ref|ZP_07209673.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 124-1]
 gi|301327988|ref|ZP_07221153.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 78-1]
 gi|307137421|ref|ZP_07496777.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736]
 gi|307313793|ref|ZP_07593410.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|309794255|ref|ZP_07688679.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 145-7]
 gi|312970872|ref|ZP_07785051.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1827-70]
 gi|331641310|ref|ZP_08342445.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736]
 gi|548730|sp|P25888|RHLE_ECOLI RecName: Full=ATP-dependent RNA helicase rhlE
 gi|560801|gb|AAA53653.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           W3110]
 gi|1787016|gb|AAC73884.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|4062355|dbj|BAA35457.1| RNA helicase [Escherichia coli str. K12 substr. W3110]
 gi|169755775|gb|ACA78474.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
 gi|169888291|gb|ACB01998.1| RNA helicase [Escherichia coli str. K-12 substr. DH10B]
 gi|188490172|gb|EDU65275.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 53638]
 gi|190903787|gb|EDV63502.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B7A]
 gi|194418629|gb|EDX34716.1| putative ATP-dependent RNA helicase RhlE [Shigella dysenteriae
           1012]
 gi|194422691|gb|EDX38688.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 101-1]
 gi|209911302|dbj|BAG76376.1| putative ATP-dependent RNA helicase [Escherichia coli SE11]
 gi|218351003|emb|CAU96707.1| RNA helicase [Escherichia coli 55989]
 gi|218360149|emb|CAQ97698.1| RNA helicase [Escherichia coli IAI1]
 gi|238863492|gb|ACR65490.1| RNA helicase [Escherichia coli BW2952]
 gi|242376589|emb|CAQ31298.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
 gi|253325244|gb|ACT29846.1| DEAD/DEAH box helicase domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972775|gb|ACT38446.1| RNA helicase [Escherichia coli B str. REL606]
 gi|253976995|gb|ACT42665.1| RNA helicase [Escherichia coli BL21(DE3)]
 gi|260450056|gb|ACX40478.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
 gi|300401169|gb|EFJ84707.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 84-1]
 gi|300412990|gb|EFJ96300.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 115-1]
 gi|300420852|gb|EFK04163.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 182-1]
 gi|300462602|gb|EFK26095.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 187-1]
 gi|300531132|gb|EFK52194.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 107-1]
 gi|300841050|gb|EFK68810.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 124-1]
 gi|300845553|gb|EFK73313.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 78-1]
 gi|306906433|gb|EFN36947.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|308122160|gb|EFO59422.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 145-7]
 gi|309701075|emb|CBJ00373.1| putative ATP-dependent RNA helicase [Escherichia coli ETEC H10407]
 gi|310336633|gb|EFQ01800.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1827-70]
 gi|315060033|gb|ADT74360.1| RNA helicase [Escherichia coli W]
 gi|315135447|dbj|BAJ42606.1| ATP-dependent RNA helicase RhlE [Escherichia coli DH1]
 gi|315257782|gb|EFU37750.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 85-1]
 gi|320178508|gb|EFW53473.1| ATP-dependent RNA helicase RhlE [Shigella boydii ATCC 9905]
 gi|323172087|gb|EFZ57726.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli LT-68]
 gi|323379408|gb|ADX51676.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11]
 gi|323942670|gb|EGB38835.1| DEAD/DEAH box helicase [Escherichia coli E482]
 gi|323963044|gb|EGB58615.1| DEAD/DEAH box helicase [Escherichia coli H489]
 gi|323971962|gb|EGB67183.1| DEAD/DEAH box helicase [Escherichia coli TA007]
 gi|331038108|gb|EGI10328.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736]
 gi|332091029|gb|EGI96119.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
           155-74]
 gi|332342129|gb|AEE55463.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMNK88]
          Length = 454

 Score =  305 bits (782), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|301024520|ref|ZP_07188196.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 196-1]
 gi|299880373|gb|EFI88584.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 196-1]
          Length = 438

 Score =  305 bits (782), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|82543242|ref|YP_407189.1| ATP-dependent RNA helicase RhlE [Shigella boydii Sb227]
 gi|81244653|gb|ABB65361.1| putative ATP-dependent RNA helicase [Shigella boydii Sb227]
          Length = 454

 Score =  305 bits (782), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  LQNP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLQNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK   I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSSDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|333009786|gb|EGK29235.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-272]
 gi|333020451|gb|EGK39714.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-227]
          Length = 454

 Score =  305 bits (782), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSVAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|149371676|ref|ZP_01891092.1| RNA helicase [unidentified eubacterium SCB49]
 gi|149355303|gb|EDM43863.1| RNA helicase [unidentified eubacterium SCB49]
          Length = 419

 Score =  305 bits (782), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 159/373 (42%), Positives = 235/373 (63%), Gaps = 4/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGLS  ++ A+   GY  P+PIQ K IP +L+  DV   AQTGTGKTA F LPML
Sbjct: 1   MTFKDLGLSDPLLKAISKKGYTTPSPIQAKAIPKILEGKDVLASAQTGTGKTAGFSLPML 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            I+ K    R R  + LI+ PTRELAAQ+    + Y    ++   ++ GG+    Q + L
Sbjct: 61  HIITKQPFQRHRPVKALIVTPTRELAAQILKEIKDYSAFTDVRSTVIFGGVNANPQIRAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G D+L+ TPGR+LD  ++G   M  +E LV+DEADRMLDMGF+  I  I +++P  RQ
Sbjct: 121 KQGTDILVATPGRLLDLHSQGVFNMKKVEFLVLDEADRMLDMGFVRDINKILAILPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++K++++FL NP  +E    +STAE ++     T    S K  L+ +L+
Sbjct: 181 NLLFSATFSKEIKKLAQSFLTNPVLVEAQRENSTAEKVKQTIYKT--NKSAKTNLVIKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  +IF   K     L   L K      AIHGN  Q +R K L+ FK+G+I+++
Sbjct: 239 -TEGNWEQVLIFTRTKHGANRLAEKLGKADVKSAAIHGNKSQGARTKALAGFKDGSIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + HV N+++PN  E+Y+HRIGRT RAG  G A ++V+ ++ +++  
Sbjct: 298 VATDIAARGLDIPLLPHVINYELPNIPEDYVHRIGRTARAGASGDAISIVSVDEFEYVKG 357

Query: 360 IEKLIEKKVDWLN 372
           IEKL+ +K++ + 
Sbjct: 358 IEKLLGEKLNSIT 370


>gi|148262453|ref|YP_001229159.1| DEAD/DEAH box helicase domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146395953|gb|ABQ24586.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
           Rf4]
          Length = 453

 Score =  305 bits (782), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 156/364 (42%), Positives = 226/364 (62%), Gaps = 5/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L LSP ++ A+   GY  PTPIQ + IPL L   D+   AQTGTGKTA+F LP L
Sbjct: 1   MSFETLQLSPSILKAIAVCGYTTPTPIQEQAIPLALAGKDLIASAQTGTGKTAAFTLPAL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L        + PR L+L PTRELA QV D    YGK   +    ++GG+P+  Q + L
Sbjct: 61  QRLSTPSPINGKGPRILVLTPTRELANQVTDAVRNYGKFMRVRSGAILGGMPYREQLQLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++DH  RG++ ++ +E+L++DEADRMLDMGF   +  I +  P  RQ
Sbjct: 121 SQPVDLIVATPGRLIDHLERGRINLSRLELLILDEADRMLDMGFSDDVDKIAAAAPANRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQL 238
           TLLF+ATM D + K+++  L++P RIE+    ++ + IE    V    Q+  K  +LQ L
Sbjct: 181 TLLFTATMDDVMAKLAQRLLKDPVRIEIAGQKTSHDQIEQRLHVVDNLQH--KNRMLQHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   +  K  IIF   K++   L   L  QG +  A+HG++ Q +R K ++N + G ++L
Sbjct: 239 IADGNLTK-AIIFSATKRDADMLARELHAQGHAAAALHGDMTQNARNKTITNMRRGKVRL 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  + HV NFD+P  AE+Y+HRIGRTGRAG  G A + V+  DI ++D
Sbjct: 298 LVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFVSLNDINYLD 357

Query: 359 AIEK 362
            IE+
Sbjct: 358 RIER 361


>gi|220926974|ref|YP_002502276.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219951581|gb|ACL61973.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
           ORS 2060]
          Length = 506

 Score =  305 bits (782), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 154/370 (41%), Positives = 229/370 (61%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL+  ++ A+ + GYV PTPIQ + +P  +   D+CGIAQTGTGKTA+F LP+L  
Sbjct: 4   FVDFGLAAPIMKALAETGYVTPTPIQAQAVPPAMTGRDLCGIAQTGTGKTAAFALPILHR 63

Query: 63  LEKGRARVRMPR----TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L       R PR     L+L PTRELA+Q+AD+F  YGK    +  ++ GG+    Q + 
Sbjct: 64  LASETPAKRAPRRGCRVLVLSPTRELASQIADSFRDYGKFLPFSTTVVFGGVTIGRQERA 123

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G DVL+ TPGR+LD  +R  L ++++E LV+DEAD+MLD+GFI  ++ I +L+P  R
Sbjct: 124 LANGIDVLVATPGRLLDLVDRRSLSLDSVEYLVLDEADQMLDLGFIHALKRIVTLLPKAR 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM   +  ++  +L++P ++ V   ++TAE +E   +  +     K ALL  +
Sbjct: 184 QSLFFSATMPKNIATLAAQYLRDPVQVAVTPVATTAERVEQRVI--HVSTGAKQALLGTI 241

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ + ++   ++F   K     +   LEK G    AIHGN  Q  R + L+ F+ GT ++
Sbjct: 242 LRDE-SIDRVLVFTRTKHGADRVVRGLEKVGIGSAAIHGNKSQPQRERALAAFRAGTCRV 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  V HV NFD+PN  E Y+HRIGRT RAG  G A +   +E+  ++ 
Sbjct: 301 LVATDIAARGIDVEGVTHVVNFDLPNVPEAYVHRIGRTARAGADGLAISFCNEEERAYLR 360

Query: 359 AIEKLIEKKV 368
            IE+L  +KV
Sbjct: 361 DIERLTRQKV 370


>gi|239918236|ref|YP_002957794.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
 gi|239839443|gb|ACS31240.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
          Length = 731

 Score =  305 bits (782), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 153/374 (40%), Positives = 229/374 (61%), Gaps = 9/374 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL  +V+ AV D GY  P+PIQ  TIPL+L   DV G+AQTGTGKT +F LP L+ 
Sbjct: 74  FLDLGLDARVLAAVEDLGYTAPSPIQEATIPLLLAGRDVVGLAQTGTGKTGAFALPALSR 133

Query: 63  LEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
           L +      R   P+ L L PTRELA Q+A+ F+ Y K+  +++V  + GG P+  Q   
Sbjct: 134 LAEASDVNGRANAPQILALAPTRELALQLAEAFDAYAKHLGDVSVLAVYGGSPYGPQLSA 193

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RGA V++ TPGR++DH  RG L ++ ++ LV+DEAD ML MGF   +  I +  P ++
Sbjct: 194 LRRGAQVVVGTPGRVIDHIERGSLDLSQLQTLVLDEADEMLRMGFAEEVDRILASTPASK 253

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT LFSATM   ++++S  +L +P+ + V+  S+T+ TI   ++    QY  K   + ++
Sbjct: 254 QTALFSATMPPAIRRISAQYLNSPEEVAVSRQSTTSATIRQRYLQVGHQY--KLEAMTRI 311

Query: 239 LQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+++D    G+I F   +     L   L + GF   AI G+I Q+ R K + + K G + 
Sbjct: 312 LETED--HEGVIAFVRTRAGTEELAQKLTRAGFKAVAISGDIAQKQREKTVEDLKTGRVD 369

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  + HV N+D+P  AE+Y+HRIGRTGRAGR G A   +   +   +
Sbjct: 370 ILVATDVAARGLDVERISHVINYDIPQDAESYVHRIGRTGRAGRQGDAVLFMTPRERFLL 429

Query: 358 DAIEKLIEKKVDWL 371
             IE+   ++V+ +
Sbjct: 430 KQIERTTRQQVEEM 443


>gi|324011108|gb|EGB80327.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 60-1]
          Length = 438

 Score =  305 bits (782), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|82776130|ref|YP_402477.1| ATP-dependent RNA helicase RhlE [Shigella dysenteriae Sd197]
 gi|81240278|gb|ABB60988.1| putative ATP-dependent RNA helicase [Shigella dysenteriae Sd197]
          Length = 454

 Score =  305 bits (781), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|324018526|gb|EGB87745.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 117-3]
          Length = 442

 Score =  305 bits (781), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|289705043|ref|ZP_06501454.1| putative ATP-dependent RNA helicase DeaD [Micrococcus luteus SK58]
 gi|289558206|gb|EFD51486.1| putative ATP-dependent RNA helicase DeaD [Micrococcus luteus SK58]
          Length = 715

 Score =  305 bits (781), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 154/374 (41%), Positives = 231/374 (61%), Gaps = 9/374 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL  +V+ AV + GY +P+PIQ  TIPL+L   DV G+AQTGTGKT +F LP L+ 
Sbjct: 50  FLDLGLDARVLAAVEELGYTRPSPIQEATIPLLLDGRDVVGLAQTGTGKTGAFALPALSR 109

Query: 63  LEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
           L +      R   P+ L+L PTRELA QVAD F+ Y K+ + ++V  + GG P+  Q   
Sbjct: 110 LAETTDVNGRADTPQVLVLAPTRELALQVADAFDSYAKHLDDVSVLAVYGGSPYGPQLAG 169

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RGA V++ TPGR++DH  RG L +++++ LV+DEAD ML MGF   +  I +  P T+
Sbjct: 170 LRRGAQVVVGTPGRVIDHLERGSLDLSDLQTLVLDEADEMLRMGFAEEVDRILASTPDTK 229

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT LFSATM   ++++S  +L  P+ + V   S+T+ TI   ++    Q+  K   L ++
Sbjct: 230 QTALFSATMPPAIRRISAQYLNAPEEVAVARQSTTSATIRQRYLQVGHQW--KFEALSRI 287

Query: 239 LQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++++   +G+I F   +     L   L + GF   AI G+I Q+ R K + + K G + 
Sbjct: 288 LETEE--HDGVIAFVRTRAGTEELAQKLTRAGFKAVAISGDIAQKQREKTVEDLKAGRVD 345

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  + HV N+D+P  AE+Y+HRIGRTGRAGR G A   +   +   +
Sbjct: 346 ILVATDVAARGLDVERISHVVNYDIPQDAESYVHRIGRTGRAGRQGDAVLFMTPRERFLL 405

Query: 358 DAIEKLIEKKVDWL 371
             IE+   ++V+ +
Sbjct: 406 KQIERTTRQQVEEM 419


>gi|71279831|ref|YP_267868.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71145571|gb|AAZ26044.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 466

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 155/370 (41%), Positives = 232/370 (62%), Gaps = 6/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS  ++ AV D GY  P+PIQ + IP V+   DV   AQTGTGKTA F LP+L  
Sbjct: 8   FTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQR 67

Query: 63  LEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   +         R LIL PTRELAAQ++++ E YGK  NL   ++ GG+    Q  +L
Sbjct: 68  LSSSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIARL 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DVL+ TPGR+LD +N+  +  + +E+ ++DEADRMLDMGFI  I+ + + +P  RQ
Sbjct: 128 RQGVDVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPKDRQ 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++ +++  + NP  I V+  +STAE +     A      +K A+L  L+
Sbjct: 188 NLLFSATFSPEIRALAKGMVNNPLEISVDAENSTAEKVTQWLTAV--DKKRKPAVLTHLI 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++  +  ++F   K     L   LE +G +  AIHGN  Q +R K L+ FK+G+++++
Sbjct: 246 K-ENNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V NFD+PN  E+Y+HRIGRT RAG  G+A +LV  +++  +  
Sbjct: 305 VATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDLLWG 364

Query: 360 IEKLIEKKVD 369
           IE +I++ ++
Sbjct: 365 IEHVIQQHIE 374


>gi|289665420|ref|ZP_06487001.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 460

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 164/373 (43%), Positives = 235/373 (63%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PT IQ + IPLVL  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      V   R PR LIL PTRELA QV D+   Y K   +  A++ GG+    Q  
Sbjct: 61  QHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+LI  PGR++DH  R  + ++ IE+L++DEADRMLDMGF+P I+ I + +P  
Sbjct: 121 ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT  + +++++  F++NP +I+V   ++ AE+I H         ++K  LL 
Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDG--ARKRDLLL 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL +QD+ +  ++F   K     L   LEK G    AIHGN  Q  RM+ LS+FK G +
Sbjct: 239 HLL-AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LVA+++ K 
Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357

Query: 357 IDAIEKLIEKKVD 369
           +  I +++ + V+
Sbjct: 358 LRQIVRMLGRDVE 370


>gi|323190923|gb|EFZ76190.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli RN587/1]
          Length = 453

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 YMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|193212728|ref|YP_001998681.1| DEAD/DEAH box helicase domain-containing protein [Chlorobaculum
           parvum NCIB 8327]
 gi|193086205|gb|ACF11481.1| DEAD/DEAH box helicase domain protein [Chlorobaculum parvum NCIB
           8327]
          Length = 427

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 156/374 (41%), Positives = 235/374 (62%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL   ++ A+ + GY  PTPIQ + IPL+L+ HD+ G AQTGTGKTA+F LP+L
Sbjct: 1   MQFSALGLIDPLLKALDEEGYSSPTPIQAEAIPLLLEGHDLLGCAQTGTGKTAAFALPIL 60

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L + +   R R  R L+L PTRELA Q+ ++FE YG++  L   ++ GG+    Q + 
Sbjct: 61  QLLHQDQEHGRKRKIRCLVLTPTRELALQIGESFEAYGRHTGLKSTVIFGGVNQNPQTRT 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+L+ TPGR+LD   +  L + +IE  V+DEADRMLDMGFI  ++ + + +P  +
Sbjct: 121 LAGGVDILVATPGRLLDLMGQEHLHLRDIEYFVLDEADRMLDMGFIHDVKKVLAALPKKK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM   +  ++ + L  PK++ V   SSTAE I    +  +     K +LL+ L
Sbjct: 181 QSLFFSATMPPAIVNLAASILHQPKKVTVTPVSSTAEIINQHIL--FVDRENKNSLLEHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ++D + + + F   K     +   L ++     AIHGN  Q +R + L NFK G  ++
Sbjct: 239 LQNRD-ISSVLAFTRTKHGADKVAKFLTRKNIKAEAIHGNKSQNARQRALGNFKSGETRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+ +V N D+PN AE Y+HRIGRTGRAG  G A++    E+ +++ 
Sbjct: 298 LVATDIAARGIDVDDLEYVINIDLPNVAETYVHRIGRTGRAGNRGTAYSFCNAEEKEYLR 357

Query: 359 AIEKLIEKKVDWLN 372
            IEKLI+K +  ++
Sbjct: 358 DIEKLIDKSITVID 371


>gi|161504014|ref|YP_001571126.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865361|gb|ABX21984.1| hypothetical protein SARI_02107 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 455

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 163/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPPK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ +E + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELL- 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G +
Sbjct: 237 SLLIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDL 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCIDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|170698992|ref|ZP_02890050.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170136099|gb|EDT04369.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 472

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 232/372 (62%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + ++N++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAE++            +K  LL 
Sbjct: 181 QRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|117621455|ref|YP_855288.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117562862|gb|ABK39810.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 416

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 168/402 (41%), Positives = 238/402 (59%), Gaps = 11/402 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADL LSP++   + + GY  PTP+Q   IP++L   D+   AQTGTGKTA+FVLP+L  
Sbjct: 6   FADLALSPRLQQTLTELGYAAPTPVQASAIPVILAGRDLMAGAQTGTGKTAAFVLPLLEQ 65

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L+        P R L+L PTRELA QV ++  +Y K  +LT  L+ GG+   AQ + L+
Sbjct: 66  LLQNPTNDAPRPIRALVLVPTRELAIQVHESVTRYAKGTDLTSTLVYGGVSIAAQVEALK 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+LI TPGR+LDH  +G L +  +  LV DEADRMLDMGF+  I+ +   +P  RQT
Sbjct: 126 AGVDILIATPGRLLDHLRQGALSLAALHHLVFDEADRMLDMGFMDEIKELLKQIPADRQT 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D L  +S+  L +P+ IEV   ++TA  +E           +K AL++ +L 
Sbjct: 186 LLFSATCDDNLFALSKVLLHDPELIEVAPRNTTAAEVEQRVYTVDG--DRKLALVEHMLN 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      +IF   ++    L   L K G +  A HG++ Q +R K+L  F+ GT+Q +V
Sbjct: 244 VKG-WAPALIFSRTRQGADKLAQQLGKAGINALAFHGDLSQGAREKVLLEFRAGTLQALV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+ +V N + P  AE+Y+HRIGRTGRAG  G A TL + ED   ++ +
Sbjct: 303 ATDVAARGLDISDLNYVINMEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEKV 362

Query: 361 EKLIEKKV--DWLNG---DLSSLNP-PLEKIDIAQHNHARKN 396
           E +++ ++   W  G   DL+   P P      AQ   ARK 
Sbjct: 363 EAVLDTRLPQQWFPGFEPDLTRFEPEPRRSSKAAQKQRARKQ 404


>gi|84622357|ref|YP_449729.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84366297|dbj|BAE67455.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 460

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 164/373 (43%), Positives = 235/373 (63%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PT IQ + IPLVL  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      V   R PR LIL PTRELA QV D+   Y K   +  A++ GG+    Q  
Sbjct: 61  QHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+LI  PGR++DH  R  + ++ IE+L++DEADRMLDMGF+P I+ I + +P  
Sbjct: 121 TLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT  + +++++  F++NP +I+V   ++ AE+I H         ++K  LL 
Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDG--ARKRDLLL 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL +QD+ +  ++F   K     L   LEK G    AIHGN  Q  RM+ LS+FK G +
Sbjct: 239 HLL-AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LVA+++ K 
Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357

Query: 357 IDAIEKLIEKKVD 369
           +  I +++ + V+
Sbjct: 358 LRQIVRMLGRDVE 370


>gi|300957744|ref|ZP_07169931.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 175-1]
 gi|300315560|gb|EFJ65344.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 175-1]
          Length = 439

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|298674218|ref|YP_003725968.1| DEAD/DEAH box helicase domain-containing protein [Methanohalobium
           evestigatum Z-7303]
 gi|298287206|gb|ADI73172.1| DEAD/DEAH box helicase domain protein [Methanohalobium evestigatum
           Z-7303]
          Length = 431

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 160/366 (43%), Positives = 233/366 (63%), Gaps = 6/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  +  A+ D GY +PTPIQ ++IP ++Q  DV G AQTGTGKTA+F +P L  
Sbjct: 6   FNELNLSRDIEKAIEDLGYEEPTPIQARSIPYIMQGRDVIGQAQTGTGKTAAFGIPALEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++   +V+   T++L PTRELA QVAD   K  +   + V  + GG P E Q K L +G
Sbjct: 66  VDRNSKKVQ---TIVLCPTRELANQVADELNKLARYKKIKVLPIYGGQPIERQIKALNKG 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A ++I TPGRILDH  R  L ++N+++ V+DEAD MLDMGF   I+ I S +P  RQT L
Sbjct: 123 AQIVIGTPGRILDHMERHTLSLDNVKMTVLDEADEMLDMGFREDIELILSKLPDKRQTTL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   + K+++ +  NP+ I+      T   +E  +     + SK  AL +  L   
Sbjct: 183 FSATMPGPIMKMTKKYQDNPELIKTVHKKLTVPQVEQTYFEV-KERSKPEALCR--LTDF 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +K+ ++FCN KK V NL  +L+ +G+    +HG++ Q+ R K++SNFK G I+ +VA+
Sbjct: 240 YNIKSSLVFCNTKKGVDNLVETLKTRGYLADGLHGDMKQKQRDKVMSNFKNGEIETLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+D+ ++  VFN+DVP   E+Y+HRIGRTGRAG+ GKAFT    ++I  I  I+K
Sbjct: 300 DVAARGIDVENIEVVFNYDVPQDEESYVHRIGRTGRAGKQGKAFTFAFGKEIYKIKDIQK 359

Query: 363 LIEKKV 368
             + K+
Sbjct: 360 YTQTKI 365


>gi|326405112|ref|YP_004285194.1| ATP-dependent RNA helicase RhlE [Acidiphilium multivorum AIU301]
 gi|325051974|dbj|BAJ82312.1| ATP-dependent RNA helicase RhlE [Acidiphilium multivorum AIU301]
          Length = 470

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 156/367 (42%), Positives = 230/367 (62%), Gaps = 5/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGL+  ++ A+ +  Y  PTPIQ ++IP++L+ HD+ GIAQTGTGKTA+FVLP+L 
Sbjct: 3   DFTTLGLAEPLLRAISEQSYETPTPIQARSIPVMLEGHDLVGIAQTGTGKTAAFVLPILH 62

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   RAR   R  R L+L PTRELA Q+AD    YGK    +VA++IGG     Q +++
Sbjct: 63  RIAANRARPAPRACRALVLAPTRELATQIADAARTYGKFTRPSVAVVIGGAKPGPQARRM 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G D+L+ TPGR+LDH   G + ++ +E +V+DEAD+MLD+GFIP I+ I + +P  RQ
Sbjct: 123 ESGVDLLVATPGRLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQIMAKLPRQRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++FSATM   ++ ++  FL++P+ + V+  S   + I+   V   A   KK  L    L
Sbjct: 183 AVMFSATMPKPIRALAGEFLRDPREVAVSVESKPVDRIDQQ-VLLLAPEEKKDKL--AWL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +   ++  I+F   K     +   LE  G    AIHGN  Q  R + L  F+ G I+++
Sbjct: 240 LADVAVERAIVFTRTKHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGRIRVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V HV NF++PN  E+Y+HRIGRT RAG  G A +LV   ++ ++  
Sbjct: 300 VATDIAARGIDVDNVSHVVNFELPNVPESYVHRIGRTARAGAEGVAISLVEPSELPYLRD 359

Query: 360 IEKLIEK 366
           IE LI +
Sbjct: 360 IETLIGR 366


>gi|311103372|ref|YP_003976225.1| ATP-dependent RNA helicase RhlE 1 [Achromobacter xylosoxidans A8]
 gi|310758061|gb|ADP13510.1| ATP-dependent RNA helicase RhlE 1 [Achromobacter xylosoxidans A8]
          Length = 506

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 161/370 (43%), Positives = 232/370 (62%), Gaps = 6/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  ++ A+ + GY  PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L +
Sbjct: 7   FADLGLADSLLRAIAETGYTAPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFTLPILHL 66

Query: 63  LEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L + +  +R    PR LIL PTREL AQV ++ + YGK   L   ++ GG+    Q   L
Sbjct: 67  LMQKKPELRKPGRPRCLILTPTRELTAQVEESVQTYGKYTPLNSMVMFGGVNINPQISAL 126

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+L+ TPGR+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 127 RKPLDILVATPGRLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKILALLPKQRQ 186

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ ++   L NP  + V TP +TA  +    V    Q+ K+  L+  ++
Sbjct: 187 NLLFSATFSDEIRTLARGVLNNPGEVSV-TPRNTATELVTQTVHMVEQHHKR-DLISHII 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +      ++F   K     L   L K G +  AIHGN  Q +R + L+ FK+ T+ ++
Sbjct: 245 R-ESGWHQVLVFTRTKHGANRLAEKLVKDGLTAAAIHGNKSQSARTRALAGFKDSTVTVL 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV   +IK +  
Sbjct: 304 VATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDNSEIKLLKD 363

Query: 360 IEKLIEKKVD 369
           IE+LI+K ++
Sbjct: 364 IERLIKKTIE 373


>gi|315287179|gb|EFU46591.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 110-3]
          Length = 439

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|297538309|ref|YP_003674078.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera sp.
           301]
 gi|297257656|gb|ADI29501.1| DEAD/DEAH box helicase domain protein [Methylotenera sp. 301]
          Length = 466

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 164/373 (43%), Positives = 244/373 (65%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL+P+++ A+ ++GY KPTPIQ + IP+ L   D+   AQTGTGKTA+F LP+L
Sbjct: 10  LAFTDLGLAPELLKALTESGYTKPTPIQAQAIPVALAGGDLMAGAQTGTGKTAAFALPLL 69

Query: 61  TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L    +    P     R LIL PTRELA QV ++ + Y K+  L   ++ GG+  + Q
Sbjct: 70  QKLLPLASSSASPAKHPVRALILTPTRELAIQVEESVKAYAKHTPLRSLVVYGGVDIKTQ 129

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G +VL+ TPGR+LDH  +  + +N ++ILV+DEADRMLDMGF+P ++ I +L+P
Sbjct: 130 TPHLKTGVEVLVATPGRLLDHIEQKTIQLNQVQILVLDEADRMLDMGFMPDLKRILALLP 189

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ L+FSAT +++++K+++ FL  P+ IEV   ++T + +    V   AQ S K  LL
Sbjct: 190 KQRQNLMFSATFSNDIKKLADEFLTKPQLIEVARSNATNDNVTQK-VYEVAQ-SDKETLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            QLL++ +  +  IIF   K     L  SL ++G +  AIHG+  Q+ R+K L  FK GT
Sbjct: 248 IQLLKAANASQV-IIFTKTKITASRLSRSLAREGIAADAIHGDKTQQERIKALDGFKAGT 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I  +VA+D+AARGLDI ++  V N+++P+  E+Y+HRIGRTGRAG  G A + V+ E+ K
Sbjct: 307 ITALVATDVAARGLDISELPMVINYEIPSAPEDYVHRIGRTGRAGALGIAISFVSPEEDK 366

Query: 356 HIDAIEKLIEKKV 368
           +I  IEKLI++++
Sbjct: 367 YIVEIEKLIKRQI 379


>gi|213647600|ref|ZP_03377653.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 364

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 162/368 (44%), Positives = 234/368 (63%), Gaps = 8/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q++  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLI 364
           +  IEKL+
Sbjct: 357 LRDIEKLL 364


>gi|23013512|ref|ZP_00053398.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 311

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 150/282 (53%), Positives = 205/282 (72%), Gaps = 3/282 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL P+++ A+ ++GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LPM+ I
Sbjct: 20  FEDLGLGPEILKALAESGYTHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMIEI 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  GRA+ RMPR+LIL PTRELAAQVA+NF+KYGK + L  AL+IGG     Q   L+RG
Sbjct: 80  LAAGRAKARMPRSLILAPTRELAAQVAENFDKYGKYHPLKKALIIGGESMSDQVALLDRG 139

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LD F RG++L+N++++LVIDEADRMLDMGFIP ++ I  L+P  RQTL 
Sbjct: 140 VDVLIATPGRLLDMFERGRILLNDVKVLVIDEADRMLDMGFIPDVEKIVGLLPKIRQTLF 199

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++++++ FL NPK ++V+T +S A T+    +A   +  K+   L+ L++ +
Sbjct: 200 FSATMGPEIRRLADAFLMNPKEVKVSTGASAATTVVQA-MAVVEEIDKR-ETLRHLIRVE 257

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
           + +KN  IFCN+K++V  L  SL+K GF V  +HG++ Q +R
Sbjct: 258 E-VKNAFIFCNRKRDVDVLFRSLKKHGFDVVQLHGDMAQSAR 298


>gi|170768930|ref|ZP_02903383.1| putative ATP-dependent RNA helicase RhlE [Escherichia albertii
           TW07627]
 gi|170122002|gb|EDS90933.1| putative ATP-dependent RNA helicase RhlE [Escherichia albertii
           TW07627]
          Length = 447

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKNLAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 YMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|289668397|ref|ZP_06489472.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 460

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 164/373 (43%), Positives = 235/373 (63%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PT IQ + IPLVL  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLADHDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      V   R PR LIL PTRELA QV D+   Y K   +  A++ GG+    Q  
Sbjct: 61  QHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+LI  PGR++DH  R  + ++ IE+L++DEADRMLDMGF+P I+ I + +P  
Sbjct: 121 ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT  + +++++  F++NP +I+V   ++ AE+I H         ++K  LL 
Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDG--ARKRDLLL 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL +QD+ +  ++F   K     L   LEK G    AIHGN  Q  RM+ LS+FK G +
Sbjct: 239 HLL-AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LVA+++ K 
Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357

Query: 357 IDAIEKLIEKKVD 369
           +  I +++ + V+
Sbjct: 358 LRQIVRMLGRDVE 370


>gi|330445855|ref|ZP_08309507.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490046|dbj|GAA04004.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 455

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 157/365 (43%), Positives = 226/365 (61%), Gaps = 4/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V AV + GY  PTPIQ K IP+ L   ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSDSIVKAVTEMGYTSPTPIQEKAIPVALTGKNLMAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L+ G + R +  R LIL PTRELA QV DN ++Y K+ NL    + GG+ +E Q ++L
Sbjct: 61  QMLDDGIKVRPKRVRALILAPTRELAVQVEDNIKQYSKHLNLKSMAMYGGVDYEPQKRRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + IEILV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDAIEILVLDEADRMLDMGFIEDINKIVERLPVDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT++D+++ +++  ++NP  I V   +S    I+   V        K +LL  L+
Sbjct: 181 NMLFSATLSDQVRFLAKTAVRNPIEISVAKNASADPKIDQWLVTV--DKDMKSSLLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q Q   +  +IF   K     L   LEK+G    + H    Q  R ++L +FK G +Q +
Sbjct: 239 QEQQ-WEQALIFIETKHGAAKLVTQLEKRGIKAESFHSGRSQGVRSQLLEDFKNGKLQYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ +A+RG+DI  +  V N+D+P   E Y+HRIGRTGRAG  G+A + V+K++ K++  
Sbjct: 298 IATGVASRGIDIEQLTRVVNYDLPFPPEEYVHRIGRTGRAGASGEAISFVSKDNFKNLCM 357

Query: 360 IEKLI 364
           IE L+
Sbjct: 358 IESLL 362


>gi|323342110|ref|ZP_08082343.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464535|gb|EFY09728.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 475

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 159/371 (42%), Positives = 233/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F DLG++ K++ A+ + GY KPTPIQ + IP +L+ +D+ G+AQTGTGKTA+F +P L
Sbjct: 1   MEFKDLGINEKILQALTEQGYEKPTPIQEQAIPTLLKHNDLIGLAQTGTGKTAAFAVPTL 60

Query: 61  TILEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L++    R   R  R L+L PTRELA Q+ +NFE YGK  +L   ++ GG+    Q K
Sbjct: 61  QNLKEKAFDRNGKRKIRALVLTPTRELAIQIQENFEMYGKYMDLRSTVVFGGVAQRYQVK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D LI TPGR+ D  ++G + ++ IEI ++DEADRMLDMGFI  ++ I   +P  
Sbjct: 121 ALRNGVDTLIATPGRLEDLMSQGYIDLSQIEIFILDEADRMLDMGFINDVKRIIKKLPKK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTLLFSATM  E+  ++E  L NP  + V   SST ET+E      Y     K  LL  
Sbjct: 181 KQTLLFSATMPSEISSIAEMLLNNPTTVAVTPVSSTVETVEQSVY--YVDQRNKTQLLID 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+++ +  + ++F   K+    +   L +   +  AIHG+  Q +R + LS FK+GTI 
Sbjct: 239 VLENK-SFDSVLVFTRTKRGADRVARDLCRSNINAVAIHGDKSQGARQRALSGFKDGTIN 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MVA+D+AARG+DI ++ +V N+++P   E Y+HRIGRTGRAG  G A +    E+I  +
Sbjct: 298 VMVATDIAARGIDINELKYVVNYELPEVPETYVHRIGRTGRAGFSGAAISFCNFEEIPLL 357

Query: 358 DAIEKLIEKKV 368
             IE +I+ +V
Sbjct: 358 KDIEHVIQMRV 368


>gi|172061636|ref|YP_001809288.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171994153|gb|ACB65072.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 479

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 232/372 (62%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + ++N++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAE++            +K  LL 
Sbjct: 181 QRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|115352774|ref|YP_774613.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115282762|gb|ABI88279.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
          Length = 480

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 232/372 (62%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + ++N++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAE++            +K  LL 
Sbjct: 181 QRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|78067467|ref|YP_370236.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
 gi|77968212|gb|ABB09592.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
          Length = 484

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 231/372 (62%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T     R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTFYADNRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + ++N++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAE++            +K  LL 
Sbjct: 181 QRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|88859340|ref|ZP_01133980.1| hypothetical protein PTD2_20192 [Pseudoalteromonas tunicata D2]
 gi|88818357|gb|EAR28172.1| hypothetical protein PTD2_20192 [Pseudoalteromonas tunicata D2]
          Length = 413

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 156/367 (42%), Positives = 240/367 (65%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL  ++V AV + GY +PTPIQ++ IP+VL+  DV  +A TGTGKTA F LPM+
Sbjct: 1   MSFDALGLCDELVKAVTEQGYTQPTPIQVEAIPVVLRLRDVMAVANTGTGKTAGFTLPMV 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L  G  A+ +  R L++ PTRELAAQVA N + Y ++ N++ A++ GG+  E Q  +L
Sbjct: 61  QLLSGGAIAQPKSVRALVITPTRELAAQVAQNVQDYSRHTNISSAVVFGGVRIEPQIAQL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D +N+  +  N +E+LV+DEADRMLD+GFI  I++I +L+P  RQ
Sbjct: 121 ATGVDVLVATPGRLVDLYNQQAINFNQLELLVLDEADRMLDLGFIDDIRHIQTLLPSERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT +DE++ +++  L NP+ IEV+  +ST +T++   +    +  K  AL+  L 
Sbjct: 181 TLMFSATFSDEIKSLAKGMLNNPQLIEVSPVNSTVDTVKQK-IYPVDKTRKSEALIYLLK 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q   +  ++F   K+   +L   L   G +  +IH N  Q +R   L+ FK G I+++
Sbjct: 240 KHQ--WRQVLVFSRTKQGADSLVTQLNNAGINSASIHANRTQHARTHALNGFKSGEIKVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RG+D+  +  V N D+P  AE+Y+HRIGRTGRAG  G A +L + ++   + A
Sbjct: 298 VATDIASRGIDVNQLPCVINLDLPYVAEDYVHRIGRTGRAGTAGLAISLFSIDESNQLQA 357

Query: 360 IEKLIEK 366
           IE+L+ +
Sbjct: 358 IERLLGR 364


>gi|325921307|ref|ZP_08183167.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
 gi|325548274|gb|EGD19268.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
          Length = 462

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 164/373 (43%), Positives = 236/373 (63%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PT IQ + IPLVL  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      V   R PR LIL PTRELA QV D+   Y K   +  A++ GG+    Q  
Sbjct: 61  QHLGTTPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+LI  PGR++DH  R  + ++ IE+L++DEADRMLDMGF+P I+ I + +P  
Sbjct: 121 TLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT  + +++++  F++NP +I+V   ++ AE+I H         ++K  LL 
Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDG--ARKRDLLL 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL +QD+ +  ++F   K     L   LEK G    AIHGN  Q  RM+ LS+FK G +
Sbjct: 239 HLL-AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI ++  V N+D+P  AE+Y+HRIGRTGR G  G+A +LVA+++ K 
Sbjct: 298 TVLVATDIAARGIDINELPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357

Query: 357 IDAIEKLIEKKVD 369
           +  I +++ + V+
Sbjct: 358 LRQIVRMLGRDVE 370


>gi|319427184|gb|ADV55258.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 413

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 172/406 (42%), Positives = 247/406 (60%), Gaps = 14/406 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L+  +V  + + GY  PTPIQ + IP++L + DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFSSLSLNATLVNTITELGYSLPTPIQSEAIPVILAKQDVMAGAQTGTGKTAAFALPIL 60

Query: 61  TIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +L     E+   RV+  + L+L PTRELA QV  +F KY KN ++ + +  GG+  +AQ
Sbjct: 61  HLLMAKNVEQKAERVKTVQALVLVPTRELAVQVHQSFVKYAKNTDIRIGIAYGGVSIDAQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
               + G DVLI TPGR+LDH  +G L +N +  LV DEADRMLDMGF+  I  +   VP
Sbjct: 121 VDVFKTGIDVLIATPGRLLDHLRQGVLNLNQLTTLVFDEADRMLDMGFMDEINAVLKQVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT+ D + ++S++ L+ PK IEV   ++TA  +E    A  +   +K   +
Sbjct: 181 KDRQTLLFSATLDDAIFELSKSLLREPKLIEVTKRNTTAAQVEQRVYAIDS--DRKTEFV 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++S +     +IF   K+ V  L   L K      A HG++ Q +R K+L  FK G 
Sbjct: 239 SHLIRS-NHWHQVLIFSRTKQGVDRLVQQLNKLSIVTHAFHGDLSQGAREKVLQAFKLGN 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           IQ++VA+D+AARGLDI ++ +V NF++P  AE+YIHRIGRTGRAG  G A TL ++ED  
Sbjct: 298 IQVLVATDVAARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDTL 357

Query: 356 HIDAIEKLIEKKV--DWLNG---DLSSLNP-PLEKIDIAQHNHARK 395
            ++ +E +++K++   W  G   D + + P P      AQ   A+K
Sbjct: 358 LLEEVEVVLDKRLPQQWYPGFEPDFNKMEPEPRRNGKAAQKQRAKK 403


>gi|302384214|ref|YP_003820037.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
 gi|302194842|gb|ADL02414.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 528

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 155/369 (42%), Positives = 230/369 (62%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+  ++ A+   GY  PTPIQ + IP V+   D+ GIAQTGTGKTA+F LP+L  
Sbjct: 17  FESFGLNKALLQALTTEGYTVPTPIQAQAIPSVMLGKDLLGIAQTGTGKTAAFALPILHR 76

Query: 63  LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L + R    +PRT   LIL PTRELA+Q+AD+F+ YG++    VA++ GG+ +  Q + +
Sbjct: 77  LAENRV-APLPRTTRCLILSPTRELASQIADSFKAYGRHLGFKVAVVFGGVKYGPQERAI 135

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G DVL+ TPGR+LDH  +  L +++ EI V+DEAD+MLD+GF+  I+ I S +P  RQ
Sbjct: 136 QAGLDVLVATPGRLLDHMQQKTLDLSSTEIFVLDEADQMLDLGFVKPIRQIVSRIPAKRQ 195

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSATM  E+ K++   L+ P +++V   S+T E I    +  + +  +K ALL ++ 
Sbjct: 196 NLFFSATMPTEIGKLAGELLKEPVKVQVTPQSTTVERINQSVI--HVEQGRKRALLTEMF 253

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + D     ++F   K     +   LE  G    AIHGN  Q  R + L+ FK G ++++
Sbjct: 254 -ADDNFTRCLVFTKTKHGADKVAAYLEAGGVQAGAIHGNKSQPQRERTLAAFKAGKLRVL 312

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV NF++P   E Y+HRIGRT RAG  G A + VA +++K +  
Sbjct: 313 VATDIAARGIDVDGVSHVVNFELPFVPEAYVHRIGRTARAGADGSAISFVAGDEMKLLKD 372

Query: 360 IEKLIEKKV 368
           IEK+  +K+
Sbjct: 373 IEKVTRQKI 381


>gi|148261622|ref|YP_001235749.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium
           cryptum JF-5]
 gi|146403303|gb|ABQ31830.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5]
          Length = 525

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 156/367 (42%), Positives = 230/367 (62%), Gaps = 5/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGL+  ++ A+ +  Y  PTPIQ ++IP++L+ HD+ GIAQTGTGKTA+FVLP+L 
Sbjct: 58  DFTTLGLAEPLLRAISEQSYETPTPIQARSIPVMLEGHDLVGIAQTGTGKTAAFVLPILH 117

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   RAR   R  R L+L PTRELA Q+AD    YGK    +VA++IGG     Q +++
Sbjct: 118 RIAANRARPAPRACRALVLAPTRELATQIADAARTYGKFTRPSVAVVIGGAKPGPQARRM 177

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G D+L+ TPGR+LDH   G + ++ +E +V+DEAD+MLD+GFIP I+ I + +P  RQ
Sbjct: 178 ESGVDLLVATPGRLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQIMAKLPRQRQ 237

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++FSATM   ++ ++  FL++P+ + V+  S   + I+   V   A   KK  L    L
Sbjct: 238 AVMFSATMPKPIRALAGEFLRDPREVAVSVESKPVDRIDQQ-VLLLAPEEKKDKL--AWL 294

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +   ++  I+F   K     +   LE  G    AIHGN  Q  R + L  F+ G I+++
Sbjct: 295 LADVAVERAIVFTRTKHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGRIRVL 354

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V HV NF++PN  E+Y+HRIGRT RAG  G A +LV   ++ ++  
Sbjct: 355 VATDIAARGIDVDNVSHVVNFELPNVPESYVHRIGRTARAGAEGVAISLVEPSELPYLRD 414

Query: 360 IEKLIEK 366
           IE LI +
Sbjct: 415 IETLIGR 421


>gi|325915753|ref|ZP_08178055.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538017|gb|EGD09711.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
          Length = 461

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 164/373 (43%), Positives = 235/373 (63%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PT IQ + IPLVL  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      V   R PR LIL PTRELA QV D+   Y K   +  A++ GG+    Q  
Sbjct: 61  QHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+LI  PGR++DH  R  + ++ IE+L++DEADRMLDMGF+P I+ I + +P  
Sbjct: 121 TLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT  + +++++  F++NP +I+V   ++ AE+I H         ++K  LL 
Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDG--ARKRDLLL 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL +QD+ +  ++F   K     L   LEK G    AIHGN  Q  RM+ LS+FK G +
Sbjct: 239 HLL-AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LVA+++ K 
Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357

Query: 357 IDAIEKLIEKKVD 369
           +  I +++ + V+
Sbjct: 358 LRQIVRMLGRDVE 370


>gi|188578674|ref|YP_001915603.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188523126|gb|ACD61071.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 460

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 164/373 (43%), Positives = 235/373 (63%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PT IQ + IPLVL  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      V   R PR LIL PTRELA QV D+   Y K   +  A++ GG+    Q  
Sbjct: 61  QHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+LI  PGR++DH  R  + ++ IE+L++DEADRMLDMGF+P I+ I + +P  
Sbjct: 121 TLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT  + +++++  F++NP +I+V   ++ AE+I H         ++K  LL 
Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDG--ARKRDLLL 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL +QD+ +  ++F   K     L   LEK G    AIHGN  Q  RM+ LS+FK G +
Sbjct: 239 HLL-AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LVA+++ K 
Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357

Query: 357 IDAIEKLIEKKVD 369
           +  I +++ + V+
Sbjct: 358 LRQIVRMLGRDVE 370


>gi|166713488|ref|ZP_02244695.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 460

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 164/373 (43%), Positives = 235/373 (63%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PT IQ + IPLVL  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      V   R PR LIL PTRELA QV D+   Y K   +  A++ GG+    Q  
Sbjct: 61  QHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+LI  PGR++DH  R  + ++ IE+L++DEADRMLDMGF+P I+ I + +P  
Sbjct: 121 TLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT  + +++++  F++NP +I+V   ++ AE+I H         ++K  LL 
Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDG--ARKRDLLL 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL +QD+ +  ++F   K     L   LEK G    AIHGN  Q  RM+ LS+FK G +
Sbjct: 239 HLL-AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LVA+++ K 
Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357

Query: 357 IDAIEKLIEKKVD 369
           +  I +++ + V+
Sbjct: 358 LRQIVRMLGRDVE 370


>gi|218704175|ref|YP_002411694.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMN026]
 gi|293404097|ref|ZP_06648091.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1412]
 gi|298379878|ref|ZP_06989483.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1302]
 gi|300898284|ref|ZP_07116635.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 198-1]
 gi|331662152|ref|ZP_08363075.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA143]
 gi|218431272|emb|CAR12150.1| RNA helicase [Escherichia coli UMN026]
 gi|291428683|gb|EFF01708.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1412]
 gi|298279576|gb|EFI21084.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1302]
 gi|300358073|gb|EFJ73943.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 198-1]
 gi|331060574|gb|EGI32538.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA143]
          Length = 454

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 160/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP V++  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVMEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|24112165|ref|NP_706675.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 2a str. 301]
 gi|30062282|ref|NP_836453.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 2a str. 2457T]
 gi|110804797|ref|YP_688317.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 5 str. 8401]
 gi|24051003|gb|AAN42382.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str. 301]
 gi|30040527|gb|AAP16259.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str.
           2457T]
 gi|110614345|gb|ABF03012.1| putative ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401]
 gi|281600121|gb|ADA73105.1| putative ATP-dependent RNA helicase [Shigella flexneri 2002017]
 gi|313650305|gb|EFS14717.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri 2a str.
           2457T]
 gi|332759696|gb|EGJ89999.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri
           4343-70]
 gi|332760467|gb|EGJ90756.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri
           2747-71]
 gi|332763287|gb|EGJ93529.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-671]
 gi|332767959|gb|EGJ98145.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Shigella flexneri 2930-71]
 gi|333006587|gb|EGK26086.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri VA-6]
 gi|333021182|gb|EGK40438.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-304]
          Length = 406

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSVAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|307823524|ref|ZP_07653753.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307735509|gb|EFO06357.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 419

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 163/371 (43%), Positives = 230/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ DAGY  P+PIQ + IP VL  HDV   AQTGTGKTA F LP+L
Sbjct: 1   MPFTTLGLSDPLLRAIADAGYTTPSPIQSQAIPAVLGGHDVLAAAQTGTGKTAGFTLPIL 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNK 117
             L +K     R  R LIL PTRELAAQ+ ++  KYG + +  L   ++ GG+    Q  
Sbjct: 61  HRLSQKAYGNNRPVRVLILTPTRELAAQIGESVNKYGAHLHPRLKSEVVFGGVKINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G D+L+ TPGR+LD  N+  + ++ +E L++DEADRMLDMGFI  I+ I + +P  
Sbjct: 121 RLRGGVDILVATPGRLLDLVNQNAVKLDQVETLILDEADRMLDMGFIRDIRKIIAFLPKK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +++++K++   L NP +IEV   ++ AE +E   VA     + K  LL  
Sbjct: 181 RQNLLFSATFSEDIRKLTTGLLVNPIKIEVAPRNTAAELVEQ--VAYLVNKANKTELLCH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++  D  +  ++F   K     L   L K      AIHGN  Q +R   LS FK G I+
Sbjct: 239 LIKEHD-WQQVLVFTTTKHGANRLTEKLNKVDIKAAAIHGNKSQGARTSALSGFKAGEIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  + HV NF++P   E+Y+HRIGRTGRAG  G+A +LV+ ++   +
Sbjct: 298 VLVATDVAARGIDINLLPHVVNFELPRAPEDYVHRIGRTGRAGEEGQAISLVSHDEYSFL 357

Query: 358 DAIEKLIEKKV 368
             +EKLI K++
Sbjct: 358 RLVEKLIGKEI 368


>gi|21230065|ref|NP_635982.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769942|ref|YP_244704.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188993155|ref|YP_001905165.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21111589|gb|AAM39906.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66575274|gb|AAY50684.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167734915|emb|CAP53127.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris]
          Length = 462

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 164/373 (43%), Positives = 235/373 (63%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PT IQ + IPLVL  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      V   R PR LIL PTRELA QV D+   Y K   +  A++ GG+    Q  
Sbjct: 61  QHLGTTPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+LI  PGR++DH  R  + ++ IE+L++DEADRMLDMGF+P I+ I + +P  
Sbjct: 121 ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT  + +++++  F++NP +I+V   ++ AE+I H         ++K  LL 
Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDG--ARKRDLLL 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL +QD+ +  ++F   K     L   LEK G    AIHGN  Q  RM+ LS+FK G +
Sbjct: 239 HLL-AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LVA+++ K 
Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357

Query: 357 IDAIEKLIEKKVD 369
           +  I +++ + V+
Sbjct: 358 LRQIVRMLGRDVE 370


>gi|193069347|ref|ZP_03050302.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E110019]
 gi|192957300|gb|EDV87748.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E110019]
          Length = 454

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARCNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|241760372|ref|ZP_04758467.1| dead/deah box helicase [Neisseria flavescens SK114]
 gi|241319250|gb|EER55728.1| dead/deah box helicase [Neisseria flavescens SK114]
          Length = 487

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 171/440 (38%), Positives = 262/440 (59%), Gaps = 30/440 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+ D GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L +
Sbjct: 28  FSSLGLGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLEL 87

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 88  LKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDKQTA 147

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 148 DLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 207

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A  A   KK +LL++
Sbjct: 208 RQTLLFSATFSPPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDAL--KKRSLLER 265

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+     M   I+FC  K++V  +   L ++  +  +IHG+  Q+SR++ L+ FKEGT++
Sbjct: 266 LIVDLH-MNQVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEGTLR 324

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ K + K  
Sbjct: 325 VLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMF 384

Query: 358 DAIEKLIEKKVD----------WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           +AI++L    ++          W + D    N    +    QHN +R        S   D
Sbjct: 385 EAIKELTGSDLNVERIEGFEPHWWDND----NQNEAEAQPVQHNDSR--------SRRDD 432

Query: 408 RRKKNYSSQKSHIPLKESEK 427
           R K+N  + KS    K++E+
Sbjct: 433 RNKRNEYANKSDKNSKKAEE 452


>gi|163792426|ref|ZP_02186403.1| DEAD/DEAH box helicase domain protein [alpha proteobacterium
           BAL199]
 gi|159182131|gb|EDP66640.1| DEAD/DEAH box helicase domain protein [alpha proteobacterium
           BAL199]
          Length = 446

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 155/370 (41%), Positives = 227/370 (61%), Gaps = 5/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
           DF  LGL+  ++      GY  PTPIQ+  IP +L   D+ G+AQTGTGKTA+F LPML 
Sbjct: 5   DFRSLGLAESLLRTAATCGYTTPTPIQVAAIPPLLAGRDLIGLAQTGTGKTAAFTLPMLH 64

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   G  R+ + PR LIL PTRELA Q+A   E +G++  L  AL+ GG+    Q   L
Sbjct: 65  RLAAAGEKRIPKAPRALILTPTRELAVQIAGVVETFGRSIGLRHALVHGGVSARPQAVAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +V+I TPGR+LD  N+  + ++ +E  V+DEADRMLD+GF+  ++ I +LVP  RQ
Sbjct: 125 QRGVEVMIATPGRLLDLINQRAVFLDKVEYFVLDEADRMLDLGFVRDVKRIAALVPANRQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM   + +++E+ L+NP+R+++   S+  E I+   +  +   + K  LL +LL
Sbjct: 185 TALFSATMPQSIIELTESLLRNPERVQITPTSTPIERIQQSVM--FVARANKRTLLARLL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + D +   I+F   K  V  +  SL + G +   +HGN  Q +R   L  FK G + ++
Sbjct: 243 GAPD-VSRAIVFVRTKHGVDRVVDSLRRDGLTAEGLHGNKSQGARQTALDAFKRGRLPIL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ ++ HV N D+P+  E YIHRIGRT RAG  G A +    E+I +  A
Sbjct: 302 VATDIAARGIDVHEISHVINLDLPDVPETYIHRIGRTARAGAGGIAVSFCENEEIGNFMA 361

Query: 360 IEKLIEKKVD 369
           IE  I + +D
Sbjct: 362 IESEIRRTID 371


>gi|253999448|ref|YP_003051511.1| DEAD/DEAH box helicase domain-containing protein [Methylovorus sp.
           SIP3-4]
 gi|313201470|ref|YP_004040128.1| dead/deah box helicase domain-containing protein [Methylovorus sp.
           MP688]
 gi|253986127|gb|ACT50984.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. SIP3-4]
 gi|312440786|gb|ADQ84892.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688]
          Length = 459

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 160/371 (43%), Positives = 240/371 (64%), Gaps = 8/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+P+++ A+ + GY  PTPIQ + IP+VLQ HD+   AQTGTGKTA+F LP+L  
Sbjct: 8   FADLGLAPEILKALEEFGYTVPTPIQAQAIPVVLQGHDLMAGAQTGTGKTAAFSLPLLQK 67

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L    +    P     R LIL PTRELA QV ++ + Y K+  L   ++ GG+  + Q  
Sbjct: 68  LLPQASSSASPARHPVRALILTPTRELAIQVEESVKVYAKHTALRSLVVFGGVDIKTQTP 127

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +G ++L+ TPGR+LDH  +  + +  +++L++DEADRMLDMGF+P ++ I +L+P  
Sbjct: 128 SLMKGVEILVATPGRLLDHVEQRTVQLGQVQMLILDEADRMLDMGFMPDLKRILALLPKK 187

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ L+FSAT +++++K+SE FL NPK IEV   ++ ++ +    V    + SK   L + 
Sbjct: 188 RQNLMFSATFSNDIKKLSEEFLTNPKLIEVARSNAASDKVTQK-VYQLDKDSKDSFLAKL 246

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+S    +  I+F   K     L   L ++G +  AIHG+  Q+ RM+ L  FK+G + 
Sbjct: 247 LLESNS--EQTIVFTKTKLTASRLARQLVREGIAADAIHGDKSQQERMQALEAFKQGKVT 304

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI  +  V NF++P+  E+Y+HRIGRTGRAG  G A +LV  E+ K++
Sbjct: 305 TLVATDVAARGLDIDQLPMVINFELPSAPEDYVHRIGRTGRAGASGTAISLVCPEEEKYL 364

Query: 358 DAIEKLIEKKV 368
             IEKLI++++
Sbjct: 365 KEIEKLIKREI 375


>gi|241668567|ref|ZP_04756145.1| ATP-dependent RNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877101|ref|ZP_05249811.1| ATP-dependent RNA helicase rhlE [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843122|gb|EET21536.1| ATP-dependent RNA helicase rhlE [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 445

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 174/444 (39%), Positives = 272/444 (61%), Gaps = 11/444 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+P +  A+   GY KPTPIQ K IPLVL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MQFSDLGLNPLICSALEKKGYTKPTPIQAKAIPLVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVVFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  L  +++   V+DEADRMLDMGFI  ++ I  L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQNALKFDSLNTFVLDEADRMLDMGFINDLKRIHKLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E+  ++  FL NP+ +  +  ++T + I    + T  + +K  AL+  L+
Sbjct: 181 TLMFSATFSPEITSLANEFLDNPQSVSADVVNTTVKKITQK-IYTLDKSTKINALI-SLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + QD +   ++F   K     +   L   G +  AIHGN  Q +R K L++FK   I ++
Sbjct: 239 KDQD-LHQVLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFKSKDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+PN AE+Y+HRIGRTGRAG+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQDGLAISLVSADEVESLSN 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG-FDRRKKNYSSQ 416
           IE LI   +  + L G  ++ N P+    +++   A+K + +   +T   ++  KN S +
Sbjct: 358 IEHLIGHLLPREELEGFEATHNVPI--TSMSRKTKAKKIDEVKIIATKRANKNNKNTSQK 415

Query: 417 KSHIPLKESEKISKLQQDIQENDA 440
           KS    K+  K  K++Q I +N +
Sbjct: 416 KSSNHNKDFAK--KIKQKIHQNKS 437


>gi|171317466|ref|ZP_02906657.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
 gi|171097362|gb|EDT42206.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
          Length = 480

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 232/372 (62%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + ++N++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAE++            +K  LL 
Sbjct: 181 QRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|221134107|ref|ZP_03560412.1| DEAD/DEAH box helicase domain-containing protein [Glaciecola sp.
           HTCC2999]
          Length = 442

 Score =  305 bits (780), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 160/372 (43%), Positives = 234/372 (62%), Gaps = 7/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGLSP V+ AV D GY +P+PIQ + I  VL   DV   AQTGTGKT +F LP++ +
Sbjct: 5   FSDLGLSPAVLQAVSDQGYTQPSPIQQQAIGPVLDGQDVMAAAQTGTGKTGAFALPIVNL 64

Query: 63  LEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L +   R   P   + LIL PTRELAAQVA++ +   ++  L   ++ GG+    Q + L
Sbjct: 65  LSETSKRPS-PNNIKALILTPTRELAAQVAESVKACAQHTQLRSMVVFGGVSINPQMQGL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+LI TPGR+LD   +  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 124 RRGCDILIATPGRLLDLHQQNAVKFSQLEILVLDEADRMLDMGFIHDIKRIMKLIPAKRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT +D ++++++ F Q P  I V   +ST   ++   V  +A+ S K  LL +L+
Sbjct: 184 TLLFSATFSDPIRELAKQFTQEPIEISVTPKNSTTPLVKQLLV--HAEKSSKTTLLIKLI 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  +  ++F   K     +   L  +  +  AIHGN  Q +R K L++FK G ++++
Sbjct: 242 KDND-WQQVLVFTRTKHGANRIAQKLGNKNITAAAIHGNKSQGARTKALADFKSGDVRVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + +V N+D+P+  E+Y+HRIGRTGRAG  G A +    EDIK ++ 
Sbjct: 301 VATDIAARGIDIDQLPNVINYDLPHVPEDYVHRIGRTGRAGATGHAVSFATNEDIKQLND 360

Query: 360 IEKLIEKKVDWL 371
           I+ LI + ++ L
Sbjct: 361 IQNLIGEHIEVL 372


>gi|293409172|ref|ZP_06652748.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291469640|gb|EFF12124.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 454

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 160/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP V++  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVMEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|74311340|ref|YP_309759.1| ATP-dependent RNA helicase RhlE [Shigella sonnei Ss046]
 gi|73854817|gb|AAZ87524.1| putative ATP-dependent RNA helicase [Shigella sonnei Ss046]
 gi|323165715|gb|EFZ51501.1| putative ATP-dependent RNA helicase rhlE [Shigella sonnei 53G]
          Length = 454

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDYLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|113954719|ref|YP_730508.1| DNA and RNA helicase [Synechococcus sp. CC9311]
 gi|113882070|gb|ABI47028.1| DNA and RNA helicase [Synechococcus sp. CC9311]
          Length = 426

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 158/362 (43%), Positives = 229/362 (63%), Gaps = 4/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  ++ A+ + GY  P+PIQ++ IP V+   DV   AQTGTGKTA F LPML  
Sbjct: 17  FDSLGLSQPLLKALQEKGYTAPSPIQLQAIPAVISGRDVMAAAQTGTGKTAGFTLPMLER 76

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G    R+  R L+L PTRELAAQV  +  +Y K   LT  ++ GG+    Q ++L++
Sbjct: 77  LNHGARPGRLQIRALVLTPTRELAAQVLASVREYSKYLQLTSDVVFGGVKINPQIQRLQK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVL+ TPGR+LD   +G +  + +E LV+DEADRMLDMGFI  I+ + S +P  RQTL
Sbjct: 137 GVDVLVATPGRLLDLLQQGAVRFDRVEFLVLDEADRMLDMGFIHDIRRVISRLPDRRQTL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT +  ++K++   L +P +I+V   + T  ++E   V      ++K  LL  L++S
Sbjct: 197 MFSATFSAPIRKLATGLLDHPVQIQVAPANQTVRSVEQ--VVHPCDMARKVDLLSHLIRS 254

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + ++  ++F   K     +   L +QG    AIHGN  Q +R + L  FK+G+++++VA
Sbjct: 255 GEWLQV-LVFSRTKHGANRVVDRLSQQGLLAAAIHGNKSQGARTRALQGFKDGSVRVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI  + HV N D+PN AE+Y+HRIGRTGRAG  G A +LVA E+   + AIE
Sbjct: 314 TDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRTGRAGETGHAISLVAAEEALLLKAIE 373

Query: 362 KL 363
           +L
Sbjct: 374 RL 375


>gi|242239842|ref|YP_002988023.1| DEAD/DEAH box helicase [Dickeya dadantii Ech703]
 gi|242131899|gb|ACS86201.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
          Length = 452

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 163/374 (43%), Positives = 233/374 (62%), Gaps = 12/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY +PTP+Q + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFESLGLSADILRAVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKG--RARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L     +A+ R P R LIL PTRELAAQ+ DN   Y K   L   ++ GG+    Q  
Sbjct: 61  QLLNDNPPQAKGRRPVRALILTPTRELAAQIGDNVTAYSKYLRLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+LI TPGR+LD  ++  + ++ ++ILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILIATPGRLLDLEHQNAVDLSKVDILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKKCAL 234
           RQ LLFSAT +DE++ ++   L NP  +EV   NTPS       H          +K  L
Sbjct: 181 RQNLLFSATFSDEIKALAGKLLTNPASVEVVRRNTPSELVTQHVHLV-----DKKRKREL 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L+  Q+  +  ++F   K    +L   L K G +  AIHGN  Q +R + L+NFK+G
Sbjct: 236 LSHLI-GQNNWRQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALANFKDG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ 
Sbjct: 295 EIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCVDEH 354

Query: 355 KHIDAIEKLIEKKV 368
           K +  IE+L+++ +
Sbjct: 355 KLLRDIERLLKRDI 368


>gi|288959329|ref|YP_003449670.1| DEAD-box ATP-dependent RNA helicase [Azospirillum sp. B510]
 gi|288911637|dbj|BAI73126.1| DEAD-box ATP-dependent RNA helicase [Azospirillum sp. B510]
          Length = 512

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 163/402 (40%), Positives = 242/402 (60%), Gaps = 11/402 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ LGL   ++ AV + GY   TPIQ   IPL+L   DV G+AQTGTGKTA+F LP+L 
Sbjct: 10  EFSGLGLIEPLLRAVAEEGYSTATPIQAGAIPLLLAGRDVLGLAQTGTGKTAAFTLPILQ 69

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L + + RV  + PR LIL PTRELA Q+ D+F  YG++  +   ++ GG+    Q   +
Sbjct: 70  RLFQNKKRVAAKSPRVLILTPTRELALQIGDSFTTYGRHLPIRRTVIHGGVGQSPQVAAI 129

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +VLI TPGR+LD   +  + +  IE+ V+DEADRMLDMGFI  ++ + +++P  RQ
Sbjct: 130 ARGVEVLIATPGRLLDLMAQNHVNLGAIEVFVLDEADRMLDMGFIRDVRKVVAVLPKERQ 189

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM D +  ++ + L + +RIEV   S+T E I    +  + +   K  LL  LL
Sbjct: 190 TLLFSATMPDAVVDLANSILTDAERIEVTPQSTTVERINQRVL--FVERGDKRRLLADLL 247

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +  M   I+F   K     +   L+K G +  AIHG+  Q +R++ L +F+ G ++ +
Sbjct: 248 EDE-AMARTIVFARTKHGADRIADHLKKAGITADAIHGDKSQSARVRALESFRNGELRAL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRT RAG  G A +    E++ ++  
Sbjct: 307 VATDIAARGIDIDGISHVINFDLPNEPESYVHRIGRTARAGTDGSAVSFCDHEEVGYLKD 366

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           IEK I + +       +  + P    D+AQ + + K  P P+
Sbjct: 367 IEKTIRQPIP------ADASHPYHAADVAQIHASSKPPPRPK 402


>gi|254282473|ref|ZP_04957441.1| dead/deah box helicase domain protein [gamma proteobacterium
           NOR51-B]
 gi|219678676|gb|EED35025.1| dead/deah box helicase domain protein [gamma proteobacterium
           NOR51-B]
          Length = 433

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 166/371 (44%), Positives = 236/371 (63%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGLS +++ AV   GY + TPIQ + IPLVL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MFFKDLGLSAELIRAVEKKGYSEATPIQQQAIPLVLRGKDVLAGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L+          PR L+L PTRELAAQV ++   YG       A++ GG+    Q +K
Sbjct: 61  QQLQNLHKPGHKSFPRVLVLTPTRELAAQVQESVRDYGAFLPFRSAVIFGGVSINPQKQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+++ TPGR+LDH  +  + +  IE LV+DEADRMLDMGFI  I+ I  ++P  R
Sbjct: 121 LIRGVDIIVATPGRLLDHVQQRSVDLTRIETLVLDEADRMLDMGFIHDIKRIVKIIPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT + E++ ++  FL++P+ I+V TP +TA  +    V    +  K+  L QQ+
Sbjct: 181 QTLLFSATFSREIKGLAAEFLRSPEEIQV-TPQNTATDLVTQVVYPVDKKRKRELLSQQI 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  +  +IF   K +   L   L+K G +  AIHGN  Q +R + L++FK GTI+ 
Sbjct: 240 --GENNWQQVLIFTRTKHSANRLAEQLDKDGITAAAIHGNKSQGARTRALADFKNGTIRA 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV NF++PN AE+Y+HRIGRT RAG+ G A +LV  +++K + 
Sbjct: 298 LVATDIAARGIDIQKLPHVVNFELPNTAEDYVHRIGRTARAGQEGSAISLVCVDELKLLK 357

Query: 359 AIEKLIEKKVD 369
            IEKL  + ++
Sbjct: 358 DIEKLTGQNIE 368


>gi|163735815|ref|ZP_02143244.1| putative ATP-dependent RNA helicase, putative [Roseobacter
           litoralis Och 149]
 gi|161390901|gb|EDQ15241.1| putative ATP-dependent RNA helicase, putative [Roseobacter
           litoralis Och 149]
          Length = 433

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 162/390 (41%), Positives = 243/390 (62%), Gaps = 15/390 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  + L P++V  +   G   PTPIQ + IP  +   DV G+AQTGTGKTA+F +P++ 
Sbjct: 3   DFEMMNLPPELVARLGRMGLNDPTPIQKQAIPHAMNGRDVMGLAQTGTGKTAAFGVPLVA 62

Query: 62  -ILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +LE  GR   +  R L+L PTRELA Q++ N   + +N  + VA+++GG     Q K+L
Sbjct: 63  QMLELDGRPAPKSVRGLVLAPTRELATQISVNLRSFAENTKVKVAMVVGGQSINNQIKRL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+L+ TPGR+LD  +R  + ++    LV+DEAD+MLDMGFI  ++ I S++P  RQ
Sbjct: 123 ERGVDLLVATPGRLLDLMDRRAVRLDETVFLVLDEADQMLDMGFIHDLRKIASVIPKERQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQ 237
           T+LFSATM  ++ +++ ++L++P R+EV+ P   A+ +  E  F+A     S+K ALL +
Sbjct: 183 TMLFSATMPKQMNELANSYLRSPIRVEVSPPGKAADKVTQEVHFIAK----SEKSALLIE 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L      +  ++F   K     L  SL K G++  +IHGN  Q  R + ++ FK G I+
Sbjct: 239 MLDKHRE-ERALVFGRTKHGSEKLMKSLVKAGYAAGSIHGNKSQGQRDRAIAAFKSGEIK 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIPDV HV+N+D+PN  ENY+HRIGRT RAG+ G A    A +++  +
Sbjct: 298 VLVATDVAARGLDIPDVKHVYNYDLPNVPENYVHRIGRTARAGKDGAAIAFCAPDEMGEL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
            AI+K +   +   +G       P E  DI
Sbjct: 358 KAIQKTMSISIPVGSGR------PWEAADI 381


>gi|319941925|ref|ZP_08016246.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
           [Sutterella wadsworthensis 3_1_45B]
 gi|319804578|gb|EFW01448.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
           [Sutterella wadsworthensis 3_1_45B]
          Length = 503

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 176/438 (40%), Positives = 255/438 (58%), Gaps = 33/438 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F   GL P+++ A+   GY +PTPIQ K IP+VL   DV G AQTGTGKTA + LP++  
Sbjct: 30  FDQFGLDPRILSAIERMGYTQPTPIQEKAIPVVLMGGDVMGAAQTGTGKTAGYGLPLIAR 89

Query: 62  ILEKGRARV---RMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           IL K    +   R P R LIL PTRELA QV+DN  KY  +  L   ++ GG+    Q  
Sbjct: 90  ILPKANTSMSPARHPVRALILAPTRELADQVSDNLVKYCADTPLRAGVVYGGVDIRPQAD 149

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG ++L  TPGR+LDH  +  + ++ +EI+V+DEADRMLDMGF+P I  I  L+P  
Sbjct: 150 MLRRGVEILTATPGRLLDHVQQRSVNLSQVEIVVLDEADRMLDMGFLPDISRILQLLPQH 209

Query: 178 RQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           RQ+LLFSAT + E++K++++FL+ NP  IEV   +STAET+     A   +  +K  +L 
Sbjct: 210 RQSLLFSATFSPEIKKLAKSFLKDNPTVIEVARENSTAETVTQELFAVNDR--EKTDVLI 267

Query: 237 QLLQSQ----DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            +L+++      +   ++F N K     L  +LE+ G +  AIHG+  Q  R   L  FK
Sbjct: 268 DMLKTRGPEGTPLTQVLVFVNAKITCRRLARTLERVGINADAIHGDKTQEERQVALEGFK 327

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G I ++VA+D+AARGLDI ++  V N+DVP  AE+Y+HRIGRTGRAG  G A  L   E
Sbjct: 328 NGAIHVLVATDVAARGLDIKELPFVINYDVPYSAEDYVHRIGRTGRAGAKGVATMLATPE 387

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           D + ++AIE L ++    +     S++P                 P  ++ +G   R+ +
Sbjct: 388 DKRLVEAIEALTKQTFKPI-----SISP----------------MPRTRRGSGAPYRRDD 426

Query: 413 YSSQKSHIPLKESEKISK 430
            SS    +   E E++++
Sbjct: 427 RSSYAERVDTPEDERLAR 444


>gi|282599579|ref|ZP_05971084.2| ATP-dependent RNA helicase RhlE [Providencia rustigianii DSM 4541]
 gi|282568585|gb|EFB74120.1| ATP-dependent RNA helicase RhlE [Providencia rustigianii DSM 4541]
          Length = 457

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 171/411 (41%), Positives = 249/411 (60%), Gaps = 20/411 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L+ +++ A+ + GY  PTPIQ + IP VL  +D+   AQTGTGKTA F LP+L  
Sbjct: 11  FSDLALNEEILRAINELGYDSPTPIQQQAIPAVLAGNDLLASAQTGTGKTAGFTLPILQK 70

Query: 63  L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L      G  R R  R LIL PTRELAAQVA+N ++Y ++ N+   ++ GG+    Q  K
Sbjct: 71  LVDAPRSGNNR-RPIRALILTPTRELAAQVAENVKEYSRHLNIRSFVVFGGVSINPQMMK 129

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G DVLI TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  R
Sbjct: 130 LRSGVDVLIATPGRLLDLEHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVITKLPKKR 189

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +D++++++   L NP  IEV   +S +E +       +    K+ A L   
Sbjct: 190 QNLLFSATFSDDIKQLASKLLNNPVSIEVAPRNSASEQVTQY---VHLVDKKRKAELLSF 246

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  ++  +  ++F   K     L   L K G    AIHGN  Q +R + L++FK G I++
Sbjct: 247 MIGRENWQQVLVFTRTKHGANRLAEHLNKDGIKSAAIHGNKSQGARTRALADFKSGDIRV 306

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV NF++PN AE+Y+HRIGRTGRA   G+A +LV  +++K + 
Sbjct: 307 LVATDIAARGLDIEQLPHVVNFELPNVAEDYVHRIGRTGRAEATGQAISLVCIDEVKLLK 366

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            IEKL++K +            P+  ID  + + + K  PI + S   DRR
Sbjct: 367 DIEKLLKKSI------------PVMAIDGYEPDPSIKAEPIQKPSQRNDRR 405


>gi|312278882|gb|ADQ63539.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
           thermophilus ND03]
          Length = 528

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 157/371 (42%), Positives = 233/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  +  AV+ AG+ +P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +K R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L 
Sbjct: 61  ---DKIRTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +NNIE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T   ++  F+    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R++I+ +FK G I +MV
Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDIMV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLGII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|160942681|ref|ZP_02089924.1| hypothetical protein FAEPRAM212_00153 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446036|gb|EDP23039.1| hypothetical protein FAEPRAM212_00153 [Faecalibacterium prausnitzii
           M21/2]
          Length = 641

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 157/375 (41%), Positives = 231/375 (61%), Gaps = 4/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ AV +AGY  P+PIQ   IP VL   D+ G AQTGTGKTA+F LPML
Sbjct: 1   MTFKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPML 60

Query: 61  TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L     R +   R LIL PTRELA Q+ ++FE YGK   L   ++ GG+    Q + L
Sbjct: 61  DRLTANAPRRKGAVRALILTPTRELALQIGESFEAYGKYLKLRSTVIFGGVGQAPQVEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G D+LI  PGR+ D   +G + ++ +EI V+DEADRMLDMGF+  ++ + + +P  RQ
Sbjct: 121 KKGVDILIACPGRLNDLIGQGFIDLSALEIFVLDEADRMLDMGFVHDVKKVIAKLPAQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  E+++++   L +P  ++V+  SST + I+      Y +   K  LL  L+
Sbjct: 181 NLMFSATMPAEIEQLAAGILHDPAFVKVDPVSSTVDRIQQSLY--YVEKGNKKLLLPWLI 238

Query: 240 QS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ Q  + N ++F   K     +   L KQG    AIHGN  Q +R+  L +FK G  ++
Sbjct: 239 KNLQPPVVNALVFSRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALEDFKSGKTRV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI ++ HVFN+D+P   E Y+HRIGRT RAG  G A +  A E+ +++ 
Sbjct: 299 LVATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEQEYLA 358

Query: 359 AIEKLIEKKVDWLNG 373
            IEKL  +K+  ++G
Sbjct: 359 GIEKLNRRKIPVVSG 373


>gi|88808729|ref|ZP_01124239.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. WH 7805]
 gi|88787717|gb|EAR18874.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. WH 7805]
          Length = 429

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 160/367 (43%), Positives = 227/367 (61%), Gaps = 4/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGL   ++ A+ D GY  P+PIQ + IP V+   DV   AQTGTGKTA F LP+L  
Sbjct: 21  FSDLGLGEPLLEALQDKGYTHPSPIQAQAIPAVIDGRDVMAAAQTGTGKTAGFTLPVLER 80

Query: 63  LEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G+   R   R L+L PTRELAAQV +N   Y  +  L   ++ GG+    Q  +L  
Sbjct: 81  LRHGKPAGRGQIRALVLTPTRELAAQVLENVRAYSSHLPLRSDVVFGGVKANPQINRLRG 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+L+ TPGR+LD   +G L  + +E LV+DEADRMLDMGFI  I+ +  L+P  RQTL
Sbjct: 141 GVDLLVATPGRLLDLHQQGALHFDQLECLVLDEADRMLDMGFIHDIRRLIRLMPVKRQTL 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT +  ++K++   L +P  ++V   + TA ++E   V      ++K  LL  L+++
Sbjct: 201 LFSATFSAPIRKLASGLLHDPVHLQVTPENQTARSVEQ--VVHPCDMARKSDLLSHLIRA 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D  +  ++F   K     +   L K+G S  AIHGN  Q +R + L  FK+G I+++VA
Sbjct: 259 GD-WRQVLVFSRTKHGANRVADRLSKEGLSAAAIHGNKSQGARTRALQGFKQGNIRVLVA 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI  + HV N D+PN AE+Y+HRIGRTGRAG  G A +LVA E+   + AIE
Sbjct: 318 TDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRTGRAGETGHAVSLVAAEEALLLKAIE 377

Query: 362 KLIEKKV 368
           +L  +++
Sbjct: 378 RLTGEEL 384


>gi|332662156|ref|YP_004444944.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332330970|gb|AEE48071.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 380

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 159/375 (42%), Positives = 236/375 (62%), Gaps = 6/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY  PTPIQ K IP++L+R D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MTFKELNLIDPILHALESEGYTIPTPIQQKAIPVLLERKDLLGCAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L + +   + PR    LIL PTRELA Q++++F  YG+N  L  A++ GG+    Q +
Sbjct: 61  QLLYQDKGLSKGPRQLKALILTPTRELAIQISESFGAYGRNCGLKHAVIFGGVNQSKQVE 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +  G D+L+ TPGR+LD  N+  L + +I   V+DEADRMLDMGF+  ++ I + +P  
Sbjct: 121 AIRGGLDILVATPGRLLDLMNQQLLSLQHINTFVLDEADRMLDMGFVHDVKRIITRLPQR 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+L FSATM  E+QK++   L NP ++EV+  SST E +E   +  + +   K  LL Q
Sbjct: 181 RQSLFFSATMPPEIQKLANTILSNPVKVEVSPISSTTEMVEQ--MVYFVEKRDKRNLLIQ 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+S + +K+ ++F   K     +   + K G    AIHGN  Q +R   L+ FKEG ++
Sbjct: 239 LLRSPN-VKSALVFTRTKHGADKINRDIVKAGIRSNAIHGNKSQNARQSALNGFKEGKLR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HV N+D+PN  E Y+HRIGRTGRAG  G A +    E+  ++
Sbjct: 298 VLVATDIAARGIDVDNLSHVINYDLPNIPETYVHRIGRTGRAGASGIALSFCDSEERAYL 357

Query: 358 DAIEKLIEKKVDWLN 372
             I KLI K +  +N
Sbjct: 358 RDISKLIAKNIPSVN 372


>gi|260597188|ref|YP_003209759.1| ATP-dependent RNA helicase RhlE [Cronobacter turicensis z3032]
 gi|260216365|emb|CBA29399.1| Putative ATP-dependent RNA helicase rhlE [Cronobacter turicensis
           z3032]
          Length = 500

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 159/372 (42%), Positives = 240/372 (64%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP+++ A+ + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 3   MSFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLL 62

Query: 61  TIL--EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L  +   A+ R P R LIL PTRELAAQV +N  +Y K  ++   ++ GG+    Q  
Sbjct: 63  QRLTAKAPHAQGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMM 122

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVLI TPGR+LD  ++  + ++ +E+LV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 123 KLRSGVDVLIATPGRLLDLEHQNAVKLDQVEVLVLDEADRMLDMGFIHDIRRVLAKLPPK 182

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L+NP+ +EV   ++ +E I +H     +    +K  LL 
Sbjct: 183 RQNLLFSATFSDDIKTLAEKLLRNPEEVEVARRNTASEQITQHVH---FVDKKRKRELLS 239

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L+      +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK G I
Sbjct: 240 YLI-GDGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGI 298

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 299 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 358

Query: 357 IDAIEKLIEKKV 368
           +  IE+++++++
Sbjct: 359 LRDIERVLQREI 370


>gi|296111234|ref|YP_003621616.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154]
 gi|295832766|gb|ADG40647.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154]
          Length = 532

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 154/371 (41%), Positives = 235/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+   GYV+ TPIQ KTIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLSGRDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    LI+ PTRELA Q AD  +K G++ ++ V ++ GG     Q + L+
Sbjct: 61  EHIDLNNKNIQ---ALIVSPTRELAIQTADELKKLGRDKHVDVQVVFGGSDIRRQIQNLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LDH NR  + ++N++ LV+DEAD ML+MGF+  I++I    P  RQT
Sbjct: 118 SHPQILVGTPGRLLDHINRKTVKIDNVKTLVLDEADEMLNMGFLEDIESIIKNTPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+ NP+ I++     T + ++  FV    + ++K   + ++  
Sbjct: 178 LLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFV--RMRENEKFDTMTRIFD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   K  I+F   K+ V  L   LE +G+    +HG++ Q+ R ++L+ FK   I ++V
Sbjct: 236 VQ-APKLAIVFGRTKRRVEELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HV+NFD+P   E+Y+HRIGRTGRAG  G + TLVA  ++ ++ A+
Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTLVAPNEMDYLRAV 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 EDLTKKRMTAL 365


>gi|268680470|ref|YP_003304901.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618501|gb|ACZ12866.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 417

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 163/371 (43%), Positives = 239/371 (64%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DL L+  ++ AV + GY  PTP+Q K IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MLFSDLNLNASILKAVQEEGYTHPTPVQEKAIPFILEGRDMLAGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L K       P  R LIL PTRELAAQV ++   YGK      A++ GG+    Q + 
Sbjct: 61  ELLLKKPRNKAKPSLRVLILTPTRELAAQVGESVRTYGKYLPFKSAVIFGGVGIHPQIQT 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+L+ TPGR+LDH ++G + +  I+  V+DEADRMLDMGFI  I+ + +L+P  R
Sbjct: 121 LKNGIDILVATPGRLLDHVSQGTINLKEIDTFVLDEADRMLDMGFIKDIRKVIALLPSKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +DE++ +  + L+NP  +EV   ++++E +    +    +  +K ALL +L
Sbjct: 181 QNLLFSATYSDEIKTLCASILKNPAVVEVARRNTSSELVNQRVIIVDCK--RKTALLGKL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S+   K  ++F   K +   +   L K G S  AIHGN  Q +R K L++FK G+I++
Sbjct: 239 I-SEHKWKQVLVFTRTKHHANKVSEYLSKIGISASAIHGNKSQSARTKALADFKSGSIKV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV N ++PN AE+Y+HRIGRTGRAG  G+A +LV  ++  ++ 
Sbjct: 298 LVATDIAARGLDIDQLPHVINLELPNIAEDYVHRIGRTGRAGNEGEAISLVCVDEFDYLK 357

Query: 359 AIEKLIEKKVD 369
            IEKLI+K ++
Sbjct: 358 GIEKLIKKTLE 368


>gi|150390712|ref|YP_001320761.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149950574|gb|ABR49102.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 433

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 170/420 (40%), Positives = 248/420 (59%), Gaps = 10/420 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   +  A+   GY + TPIQ K IP +L+  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MLFENLNIIKPIQRALTTEGYTEATPIQEKAIPSLLKGMDLLGCAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L   +  ++  R    LIL PTRELA Q+AD+FE YGK+  L   ++ GG+    Q K
Sbjct: 61  QGLSSEQRNLKGSRQIQALILAPTRELAIQIADSFETYGKHLGLRTLVIYGGVSQHPQTK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+L+ TPGR+LD  N+  + +N+I+  V+DEAD MLDMG I  ++ I   +P  
Sbjct: 121 SLNRGIDILVATPGRLLDLINQKFVRLNSIKYFVLDEADMMLDMGMIHDVRRIIKYIPAV 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+ FSATM  E+ K+++  L+ P ++E+   SST + IE      Y   S K  LL  
Sbjct: 181 RQTMFFSATMPAEIAKLADQILKEPVKVEITPVSSTVDIIEQAVY--YVNKSNKVQLLIH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+S+  + + ++F   K     +  SLEK G    AIHGN  Q +R   L+NFKE   +
Sbjct: 239 LLKSKAIV-SALVFSRTKHGADKIVKSLEKAGLQAQAIHGNKSQNARQLALNNFKERKTR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HV NFD+P   E Y+HRIGRTGRAG  G A +  A+E+   +
Sbjct: 298 ILVATDIAARGIDVEELSHVINFDLPEVPETYVHRIGRTGRAGLGGIAISFCAQEEKNLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             I+KLI K V  +        P +E ++ ++    RK++  P+ +   +RR K  S  K
Sbjct: 358 KEIQKLISKSVPVVEDHPF---PLVETLNESKEVFTRKSSA-PKTTPANNRRNKEASFAK 413


>gi|163800373|ref|ZP_02194274.1| hypothetical protein 1103602000595_AND4_06819 [Vibrio sp. AND4]
 gi|159175816|gb|EDP60610.1| hypothetical protein AND4_06819 [Vibrio sp. AND4]
          Length = 430

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 163/408 (39%), Positives = 247/408 (60%), Gaps = 15/408 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P+VV A+ + GY K TPIQ K IP+  +  D+   AQTGTGKTA+F LPM+
Sbjct: 1   MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARKGFDIFATAQTGTGKTAAFSLPMI 60

Query: 61  T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +LE  R+  R   R L++ PTRELA Q+ADN + Y K  +L+VA + GG    +Q   
Sbjct: 61  QQLLESSRSVSRKTARALVMAPTRELAEQIADNIKAYTKYTDLSVAAIFGGRKMSSQISA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H  +G + + NI+ LV DEADR+LDMGFI  ++ I   V    
Sbjct: 121 LESGVDILVATPGRLEEHIEQGNVSVANIDFLVFDEADRILDMGFIHAVRKIMLDVDTNP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L  ++++ L  PKRIEV   ++TA+TI H          +K  LL +L
Sbjct: 181 QIMMFSATTSSQLNLLAKDILHKPKRIEVERANTTAQTIAHVLYPV--DQERKTELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F N K+   ++   L+  G      HG+  Q +R + L  FK G  ++
Sbjct: 239 I-GRKNWRQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V +E+   + 
Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVV 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPP-----LEKIDIA---QHNHARKNNP 398
            +E LI++++  +  +L+   P      +EK++     ++   R+NNP
Sbjct: 358 QVENLIQQRIRRI--ELAGYEPKQRESYIEKLNSKPAFKNRQGRRNNP 403


>gi|85058891|ref|YP_454593.1| ATP-dependent RNA helicase RhlE [Sodalis glossinidius str.
           'morsitans']
 gi|84779411|dbj|BAE74188.1| putative ATP-dependent RNA helicase [Sodalis glossinidius str.
           'morsitans']
          Length = 453

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 158/373 (42%), Positives = 242/373 (64%), Gaps = 9/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS +V+ A+ + GY++PTP+Q + IP VLQ  D+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFDSLGLSAEVLRALAEKGYLEPTPVQQQAIPYVLQGRDIMASAQTGTGKTAAFTLPIL 60

Query: 61  TILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +L++     G+ R R  R LIL PTRELAAQ+ +N  +Y  +  L   ++ GG+    Q
Sbjct: 61  QLLDQRPAPAGKQR-RPIRALILTPTRELAAQIGENITEYSAHLGLRSLVVFGGVSINPQ 119

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL  G +VL+ TPGR+LD   +  + ++ +EILV+DEADRMLDMGFI  I+ +  L+P
Sbjct: 120 MMKLRGGVEVLVATPGRLLDLAQQRAVDLSQVEILVLDEADRMLDMGFIHDIRRVMKLLP 179

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ+L+FSAT +DE++ ++ + L NP  +EV   ++ +E I   FV    +  K+  LL
Sbjct: 180 TKRQSLMFSATFSDEIKTLANSLLDNPASVEVARRNTASEQITQ-FVHMVDKKRKR-ELL 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             ++  ++  +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G+
Sbjct: 238 SDMI-GRNNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKQGS 296

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+AARGLDI  + HV N+++P  AE+Y+HRIGRTGRA   G+A +LV  +++ 
Sbjct: 297 IRVLVATDIAARGLDIDLLPHVVNYELPQVAEDYVHRIGRTGRAAATGEALSLVCVDELG 356

Query: 356 HIDAIEKLIEKKV 368
            +  IE+L++K +
Sbjct: 357 LLRDIERLLKKPI 369


>gi|295104477|emb|CBL02021.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
           SL3/3]
          Length = 641

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 157/375 (41%), Positives = 231/375 (61%), Gaps = 4/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ AV +AGY  P+PIQ   IP VL   D+ G AQTGTGKTA+F LPML
Sbjct: 1   MTFKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPML 60

Query: 61  TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L     R +   R LIL PTRELA Q+ ++FE YGK   L   ++ GG+    Q + L
Sbjct: 61  DRLTANAPRRKGAVRALILTPTRELALQIGESFEAYGKYLKLRSTVIFGGVGQAPQVEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G D+LI  PGR+ D   +G + ++ +EI V+DEADRMLDMGF+  ++ + + +P  RQ
Sbjct: 121 KKGVDILIACPGRLNDLIGQGFIDLSALEIFVLDEADRMLDMGFVHDVKKVIAKLPAQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  E+++++   L +P  ++V+  SST + I+      Y +   K  LL  L+
Sbjct: 181 NLMFSATMPAEIEQLAAGILHDPAFVKVDPVSSTVDRIQQSLY--YVEKGNKKLLLPWLI 238

Query: 240 QS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ Q  + N ++F   K     +   L KQG    AIHGN  Q +R+  L +FK G  ++
Sbjct: 239 KNLQPPVVNALVFSRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALEDFKSGKTRV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI ++ HVFN+D+P   E Y+HRIGRT RAG  G A +  A E+ +++ 
Sbjct: 299 LVATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEQEYLA 358

Query: 359 AIEKLIEKKVDWLNG 373
            IEKL  +K+  ++G
Sbjct: 359 GIEKLNRRKIPVVSG 373


>gi|257440057|ref|ZP_05615812.1| putative ATP-dependent RNA helicase RhlE [Faecalibacterium
           prausnitzii A2-165]
 gi|257197409|gb|EEU95693.1| putative ATP-dependent RNA helicase RhlE [Faecalibacterium
           prausnitzii A2-165]
          Length = 641

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 158/375 (42%), Positives = 230/375 (61%), Gaps = 4/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  V+ AV  AGY  P+PIQ   IP VL   D+ G AQTGTGKTA+F LPML
Sbjct: 1   MTFNELNLSAPVLRAVAQAGYESPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPML 60

Query: 61  TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L     R +   R LIL PTRELA Q+ ++FE YGK   L   ++ GG+    Q   L
Sbjct: 61  DRLTASAPRKKGAIRALILTPTRELALQIGESFEAYGKYLTLRSTVIFGGVGQAPQVAAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G D+LI  PGR+ D   +G L ++NIEI V+DEADRMLDMGF+  ++ + + +P  RQ
Sbjct: 121 KKGVDILIACPGRLNDLVGQGLLDLSNIEIFVLDEADRMLDMGFVHDVKKVIAKLPRQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  E+++++   L +P  ++V+  SST + I+      + +   K  LL  L+
Sbjct: 181 NLMFSATMPKEIEQLAAGILHDPAFVKVDPVSSTVDRIQQSLY--FVEKGNKKFLLPWLI 238

Query: 240 QS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ +  + N ++F   K     +   L KQG    AIHGN  Q +R+  L +FK G  ++
Sbjct: 239 KNLKPEVVNALVFSRTKHGADKIAKDLNKQGIPAAAIHGNKSQTARVTALEDFKAGKTRV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI ++ HVFN+D+P   E Y+HRIGRT RAG  G A +  A E+ +++ 
Sbjct: 299 LVATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEKEYLA 358

Query: 359 AIEKLIEKKVDWLNG 373
            IEKL  +++  ++G
Sbjct: 359 GIEKLNRRQIPVVSG 373


>gi|313676359|ref|YP_004054355.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312943057|gb|ADR22247.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 413

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 158/368 (42%), Positives = 232/368 (63%), Gaps = 3/368 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   ++ A+ +  Y +PT IQ + IPL+LQ++D+   AQTGTGKTA+F +P+L
Sbjct: 1   MRFEELNIIAPILRALKEENYSEPTSIQEQAIPLLLQKNDIMASAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LEK  +  +  ++LIL PTRELA Q+ ++F  YGK  ++   ++ GG+    Q   + 
Sbjct: 61  QHLEKDNSNSKKIKSLILTPTRELAIQIGESFTTYGKYTSIRNTVIFGGVNQNKQTAAIR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+LD  N+G + + +I+  V+DEADRMLDMGFI  I+ + +++P  RQ+
Sbjct: 121 NGVDVLIATPGRLLDLMNQGFISLKDIQYFVLDEADRMLDMGFIHDIKKVIAVLPSKRQS 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM D + ++S   L NPK+I V   SSTAETI+      Y   S K  LL  +L+
Sbjct: 181 LFFSATMPDTIVELSRKILINPKKIAVTPVSSTAETIQQYLY--YTNKSTKKDLLLHILK 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               M   ++F   K     +   L+K+  S  AIHG+  Q  R K L+ FK+  I+++V
Sbjct: 239 D-SKMDQVLLFDRTKHGADRIVKELKKKNISAAAIHGDKAQNQRQKALTQFKDKEIRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + +V NFD+PN AE Y+HRIGR+GRAG  G + +L   E+  ++  I
Sbjct: 298 ATDIAARGIDIDKLQYVINFDIPNVAETYVHRIGRSGRAGEAGVSISLCEPEENDYLKDI 357

Query: 361 EKLIEKKV 368
           EKLI +K+
Sbjct: 358 EKLINQKI 365


>gi|58580393|ref|YP_199409.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58424987|gb|AAW74024.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 484

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 164/373 (43%), Positives = 235/373 (63%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PT IQ + IPLVL  HD+   AQTGTGKTA+F LP+L
Sbjct: 25  MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 84

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      V   R PR LIL PTRELA QV D+   Y K   +  A++ GG+    Q  
Sbjct: 85  QHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 144

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+LI  PGR++DH  R  + ++ IE+L++DEADRMLDMGF+P I+ I + +P  
Sbjct: 145 TLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 204

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT  + +++++  F++NP +I+V   ++ AE+I H         ++K  LL 
Sbjct: 205 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDG--ARKRDLLL 262

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL +QD+ +  ++F   K     L   LEK G    AIHGN  Q  RM+ LS+FK G +
Sbjct: 263 HLL-AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 321

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LVA+++ K 
Sbjct: 322 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 381

Query: 357 IDAIEKLIEKKVD 369
           +  I +++ + V+
Sbjct: 382 LRQIVRMLGRDVE 394


>gi|56418761|ref|YP_146079.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
 gi|81675946|sp|Q5L3G9|CSHA_GEOKA RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|56378603|dbj|BAD74511.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
          Length = 467

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 159/370 (42%), Positives = 234/370 (63%), Gaps = 6/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS +V+ A+   G+ + TPIQ KTIPL LQ  DV G AQTGTGKTA+F +P   I
Sbjct: 4   FQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIP---I 60

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +EK   +    + L++ PTRELA QV++   K G    + V  + GG   E Q + L++ 
Sbjct: 61  VEKVNVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGRI+DH NRG L + ++  +V+DEAD ML+MGFI  I+ I S VP  RQTLL
Sbjct: 121 PHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+  P+ ++V     T   I+  ++  + +  KK  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEK--KKFDILTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+F   K+ V  L  +L  +G++   IHG++ Q  R+ +L  FKEG I+++VA+
Sbjct: 239 -APELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   +I  +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIER 357

Query: 363 LIEKKVDWLN 372
             ++K++ + 
Sbjct: 358 TTKRKMERMK 367


>gi|298505039|gb|ADI83762.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens KN400]
          Length = 446

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 167/410 (40%), Positives = 246/410 (60%), Gaps = 14/410 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF   G  P V   V  AGY  PTPIQ + IP V+   DV G+AQTGTGKTA+F LP+L
Sbjct: 1   MDFKSFGFHPAVSGGVAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L++G R RVR    L++ PTRELA Q+ D+F   G+   L    + GG+    Q +KL
Sbjct: 61  HRLQQGERGRVR---ALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA+V++  PGR+LDH  +G + ++ +E+LV+DEAD+M DMGF+P I+ +   +P  RQ
Sbjct: 118 KAGAEVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPSRRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  +++ +++  L +P  ++V    + A T+ H       +   K  LL +LL
Sbjct: 178 TLLFSATMPIDIRALAQEILVDPVTVQVGN-VAPAVTVAHALYPV--EQHLKTPLLLELL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  DT ++ +IF   K     L   LEK G+   ++ GN+ Q  R   L  F++GT Q++
Sbjct: 235 RHTDT-ESVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTYQIL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV N+D+P+ AE YIHRIGRTGRA R G AFTLV  +D   + +
Sbjct: 294 VATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGAMVRS 353

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKIDIA----QHNHARKNNPIPQKS 403
           IE+ +   ++   + G   S+  P + ++ A    +   AR +   P+K 
Sbjct: 354 IERSLGATIERRTVQGFDYSVPAPKKDVEFARPPREPRQARPHGSQPKKG 403


>gi|197337346|ref|YP_002157966.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197314598|gb|ACH64047.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 418

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 162/390 (41%), Positives = 244/390 (62%), Gaps = 9/390 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+ +++  V + G+ + TP+Q + IPLVLQ HDV   AQTGTGKTA+F LP++
Sbjct: 1   MSFASLGLTEQILTTVAELGFKEATPVQKQAIPLVLQGHDVLAGAQTGTGKTAAFGLPLI 60

Query: 61  T-ILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             ++E    R    ++ R+LIL PTRELA QV D+   Y +N  L V +  GG     Q 
Sbjct: 61  QRLIESPIERHEESKVVRSLILTPTRELAQQVFDSLVSYTQNTELKVVVAYGGTSINVQK 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  GAD+LI TPGR+LDH +   + +N  E LV+DEADRMLDMGFIP I+ I   +P 
Sbjct: 121 ENLLGGADILIATPGRLLDHLHIKTITLNQAEYLVLDEADRMLDMGFIPDIKKILRKMPD 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSAT + ++++++   L  PK ++V   +STA+T+E           +K  LL 
Sbjct: 181 ERQTLFFSATFSKKVREIAYYMLNKPKEVQVTPTNSTADTVEQMVYPV--DKHRKSELLA 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L+ S++  +  ++F   K+    L   L+K G    +I+G+  Q +R++ L  FK G +
Sbjct: 239 YLIGSRN-WQQVLVFTKTKQGSDELVKELKKDGIKAASINGDKSQGARLRALEEFKTGKV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V N+++P +AE+Y+HRIGRTGRAG  GKA +L++ ++   
Sbjct: 298 RALIATDVAARGLDIEQLECVINYELPFKAEDYVHRIGRTGRAGHTGKAISLMSMDEEYL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEK 384
           + AIE L++ ++  +WL G     N PL++
Sbjct: 358 LKAIETLLDTRLPQEWLQGYEPDPNAPLKE 387


>gi|167625028|ref|YP_001675322.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167355050|gb|ABZ77663.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 437

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 164/407 (40%), Positives = 251/407 (61%), Gaps = 20/407 (4%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKG----RARV 70
           V   GY +PT IQ + IP +L   D+   AQTGTGKTA+F LP+L  +++K     +++ 
Sbjct: 40  VAQKGYQQPTAIQAEAIPAILAGRDIMASAQTGTGKTAAFTLPLLQRLIDKSSSDEQSKA 99

Query: 71  RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130
           +    L+L PTRELA QV  N  +Y  N +++  ++ GG+  +AQ  KL  G DV++ TP
Sbjct: 100 KRASVLVLAPTRELAVQVNTNVSQYAVNTDVSSIVIYGGVSIDAQATKLAAGVDVIVATP 159

Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190
           GR+LDH  RG L +++IE LV DEADRMLDMGF+  I  I   +P  RQTLLFSAT +  
Sbjct: 160 GRLLDHVRRGTLNLSDIEYLVFDEADRMLDMGFMDEINAILKQLPAKRQTLLFSATFSSA 219

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGII 250
           + ++S+  LQ P RIEV+  +S A +IE    A  ++  +K  LL  L+ ++   +  ++
Sbjct: 220 IFELSKKLLQKPLRIEVDKANSAANSIEQVVYAVDSE--RKTELLCHLI-NKSAWQQVLV 276

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F  +K+    +   +   G    A HG++ Q +R ++L++FK+G I+ +VA+D+AARGLD
Sbjct: 277 FSRKKQTADLIAQKMLAAGIEAKAFHGDLGQGAREQVLNDFKQGKIKALVATDVAARGLD 336

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV-- 368
           I ++  V N+++P  AE+Y+HRIGRTGRAG  GKA TL +++D   ++ +E +I+K++  
Sbjct: 337 IVELKVVVNYEIPFVAEDYVHRIGRTGRAGNTGKAITLYSEDDALLLEEVESVIDKRLPQ 396

Query: 369 DWLNG---DLSSLNPPLEK-IDIAQHNHARKNNPIPQKSTGFDRRKK 411
            WL G   DL+ L P   K    AQ   A+K      ++ G D+R++
Sbjct: 397 QWLEGFEPDLTKLEPVTRKNSKAAQRQRAKK------RALGADKRRR 437


>gi|221200134|ref|ZP_03573177.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD2M]
 gi|221206713|ref|ZP_03579725.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD2]
 gi|221173368|gb|EEE05803.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD2]
 gi|221180373|gb|EEE12777.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD2M]
          Length = 480

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 233/372 (62%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTFYTEHRSAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAET+            +K  LL 
Sbjct: 181 RRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|161523807|ref|YP_001578819.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|189351431|ref|YP_001947059.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
 gi|160341236|gb|ABX14322.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
           ATCC 17616]
 gi|189335453|dbj|BAG44523.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
          Length = 480

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 233/372 (62%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTFYTEHRSAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAET+            +K  LL 
Sbjct: 181 RRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|330960515|gb|EGH60775.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 559

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 151/367 (41%), Positives = 235/367 (64%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L +
Sbjct: 8   FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHL 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPSK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++PK +++ T + T   IE   +  +A   +K + +  LL+ 
Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 243 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKV 368
           ++  +KV
Sbjct: 362 RVTGQKV 368


>gi|121997715|ref|YP_001002502.1| DEAD/DEAH box helicase domain-containing protein [Halorhodospira
           halophila SL1]
 gi|121589120|gb|ABM61700.1| DEAD/DEAH box helicase domain protein [Halorhodospira halophila
           SL1]
          Length = 403

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 158/373 (42%), Positives = 234/373 (62%), Gaps = 11/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F ++GLS +++ AV   GY +PT IQ + IP VL   DV   AQTGTGKTA+F LP+L
Sbjct: 1   MTFENIGLSQELLRAVAQQGYDQPTAIQAQAIPAVLGGGDVMASAQTGTGKTAAFTLPLL 60

Query: 61  -----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                T  ++G+ R+R    L+L PTRELAAQV+++   YG++  L    + GG P   Q
Sbjct: 61  QRLSDTAPQQGQRRIR---ALVLTPTRELAAQVSESVATYGRHLPLRSTEIYGGAPMGKQ 117

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG D+++ TPGR++DH +RG + + ++++L++DEADRMLDMGF P I+ I   VP
Sbjct: 118 TAALRRGVDIVVATPGRLIDHLDRGNVDLRHVDMLILDEADRMLDMGFKPAIERILKSVP 177

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT +  +  ++  FL  P  IE  T ++ AE +E    A +    +K  LL
Sbjct: 178 NQRQTLLFSATFSGAVGGLARRFLNEPTVIEAGTANAAAEAVEQG--AYFVDAGRKRELL 235

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            QL+   D  +  ++F   K+    L   LE++G    +IHG+  Q  R + L+ FK  +
Sbjct: 236 TQLINDGD-WRQVLVFTRTKRGADRLAEQLEREGIRSQSIHGDKSQGQRGRALAAFKRKS 294

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VA+D+AARGLDI  + HV N+D+PN  E+YIHRIGRTGR G  G+A++LV  E+  
Sbjct: 295 VRALVATDVAARGLDIAGLPHVVNYDLPNNPEDYIHRIGRTGRGGDSGEAWSLVGGEERG 354

Query: 356 HIDAIEKLIEKKV 368
              AI++L+++++
Sbjct: 355 QFKAIQRLVKREI 367


>gi|221211314|ref|ZP_03584293.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD1]
 gi|221168675|gb|EEE01143.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD1]
          Length = 480

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 233/372 (62%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTFYTEHRSAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAET+            +K  LL 
Sbjct: 181 RRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|332184003|gb|AEE26257.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida 3523]
          Length = 445

 Score =  304 bits (778), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 156/365 (42%), Positives = 235/365 (64%), Gaps = 4/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+P +  A+   GY KPTPIQ K IPLVL+  DV   AQTGTGKTA F LP++
Sbjct: 1   MQFSDLGLNPLICSALEKKGYTKPTPIQAKAIPLVLKGSDVMASAQTGTGKTAGFTLPII 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVVFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  L  +++   V+DEADRMLDMGFI  ++ I  L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQNALKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++ +FL NP+ +  +  ++T + I    + T  + +K  AL+  L+
Sbjct: 181 TLMFSATFSPEIKNLANDFLNNPQSVSADVVNTTVKKITQK-IYTLDKSTKINALI-SLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + QD +   ++F   K     +   L   G +  AIHGN  Q +R K L++FK   I ++
Sbjct: 239 KDQD-LHQVLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFKSKEINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+PN AE+Y+HRIGRTGRAG+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQDGLAISLVSADEVESLSN 357

Query: 360 IEKLI 364
           IE LI
Sbjct: 358 IEHLI 362


>gi|187736504|ref|YP_001878616.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426556|gb|ACD05835.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 400

 Score =  304 bits (778), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 162/386 (41%), Positives = 238/386 (61%), Gaps = 16/386 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  V+ AV   GY  PTPIQ + IP++L+  D+ G +QTGTGKTA+F LP+L
Sbjct: 1   MLFSELGLSEPVLKAVEKCGYEHPTPIQEQAIPIILEGRDLIGASQTGTGKTAAFALPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T ++     +  P+ L+LEPTRELA QVA++F +YG+   L VALL GG+ +  Q + L+
Sbjct: 61  TRIQP----IGKPQILVLEPTRELADQVAESFAEYGEFTGLKVALLYGGVGYGKQTEDLK 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQ 179
           +GAD+++ TPGR++DHF R  +    ++ LV+DE DRMLDMGF+P ++ I +L P+  RQ
Sbjct: 117 KGADIVVATPGRLVDHFYRCTMRFGEVKALVLDEVDRMLDMGFLPIVRKIVNLCPWEGRQ 176

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM   +   ++  L +P  + +      A TI H F        ++  LL  LL
Sbjct: 177 TLFFSATMPPVIAGFAKWCLTDPAEVTIAR-REVAATISHAFYPV--ALDQRDELLLALL 233

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF--SVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  D  ++ +IF   +K    +C  L+  G+   V  +H +I Q+ RM+ L  FK G   
Sbjct: 234 KGTD-FRSVMIFTRTRKEADAVCGMLKHHGYRGEVAVMHSDIPQKERMEALKGFKSGKYD 292

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  V HV N+ VP  AE+Y+HRIGRTGRA   G AFT++  +++   
Sbjct: 293 ILVATDVAARGIDISGVTHVINYRVPENAEDYVHRIGRTGRAEASGDAFTIMTADELDFA 352

Query: 358 DAIEKLI-----EKKVDWLNGDLSSL 378
            A+E  I      KK+D  N   ++L
Sbjct: 353 AAVENFIGKPIERKKLDGFNYTYTAL 378


>gi|116074911|ref|ZP_01472172.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9916]
 gi|116068133|gb|EAU73886.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9916]
          Length = 449

 Score =  304 bits (778), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 158/371 (42%), Positives = 229/371 (61%), Gaps = 10/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS  ++ A+ + GY  P+PIQ + IP VL   D+   AQTGTGKTA F LPML  
Sbjct: 17  FDDLGLSAPLLQALREKGYSTPSPIQEQAIPAVLSGRDLMAAAQTGTGKTAGFTLPMLET 76

Query: 63  LEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L  G    R ++R    L+L PTRELAAQV DN   Y ++  L   ++ GG+    Q ++
Sbjct: 77  LSHGARPGRGQIR---ALVLTPTRELAAQVLDNARDYSRHLRLRSEVVFGGVKINPQIQR 133

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G D+L+ TPGR+LD   +G +    +E LV+DEADRMLDMGFI  I+ + S +P  R
Sbjct: 134 LQQGVDLLVATPGRLLDLHQQGAVRFERVEFLVLDEADRMLDMGFIHDIRRVLSRLPERR 193

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  ++K++   L +P +I++  P+ TA T++   V       +K  LL  L
Sbjct: 194 QNLLFSATFSPSIRKLATGLLNDPLQIQITPPNQTARTVQQ--VVHPCDMKRKPDLLSHL 251

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++S D  +  ++F   K     +   L  +G    AIHGN  Q +R + L  FK+G++++
Sbjct: 252 IRSND-WQQVLVFSRTKHGANRVAEKLTNEGLVAAAIHGNKSQGARTRALQGFKDGSVRV 310

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV N D+PN AE+Y+HRIGRTGRAG  G A +LVA E+   + 
Sbjct: 311 LVATDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRTGRAGECGHAISLVAAEEALLLK 370

Query: 359 AIEKLIEKKVD 369
           AIE+   + ++
Sbjct: 371 AIERTTRESLE 381


>gi|146302300|ref|YP_001196891.1| DEAD/DEAH box helicase domain-containing protein [Flavobacterium
           johnsoniae UW101]
 gi|146156718|gb|ABQ07572.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae
           UW101]
          Length = 415

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 162/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  +  AV + GY+ PTPIQ K+IP+VL   D+ G AQTGTGKTA+F +P++
Sbjct: 1   MLFEDLSLSKSIQKAVFEEGYLNPTPIQEKSIPIVLAGRDLIGCAQTGTGKTAAFAIPII 60

Query: 61  TILEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L +      + +  R LI+ PTRELA Q+  +F+ Y K  NLT   + GG+    Q  
Sbjct: 61  HQLHRIVGSSKKAKQIRALIVTPTRELAVQIGQSFDTYSKYTNLTQLTIFGGVSQNPQVD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G DVL+ TPGR+LD   +G L +N++  LV+DEAD+MLDMGFI  ++ I  L P  
Sbjct: 121 ALKNGVDVLVATPGRLLDLHKQGFLDLNHLHTLVLDEADQMLDMGFINDVKKIVKLTPKN 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM   +++++E FLQ+P+++EV+  SSTAE +E      +   ++K  LL +
Sbjct: 181 RQTLLFSATMPLAIRELAEMFLQDPEKVEVSPVSSTAENVEQRVY--FVDKTEKRNLLYR 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++ ++ + N ++F   K    N+  +L K+     AIHG+  Q +R ++L  FK   + 
Sbjct: 239 LIK-EENLSNVLVFSRTKHGADNVVKALRKKNIPAEAIHGDKSQNARQRVLDAFKNKEVG 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  + +V NFD+PN  E Y+HRIGRTGRAG  G A +   K++  + 
Sbjct: 298 VLVATDIAARGIDIEQLPYVINFDLPNIPETYVHRIGRTGRAGNGGIAISFCGKDEEPYW 357

Query: 358 DAIEKLIEKKVD 369
             I+KLI  KVD
Sbjct: 358 KDIKKLI--KVD 367


>gi|118602178|ref|YP_903393.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567117|gb|ABL01922.1| DEAD/DEAH box helicase domain protein [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 434

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 157/370 (42%), Positives = 240/370 (64%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF+ LGLS  ++ A+   GY +P+ IQ + IP +L+  DV   AQTGTGKTA F+LP+L
Sbjct: 1   MDFSKLGLSDSILKAIEQQGYREPSLIQAQAIPAILEGKDVMAAAQTGTGKTAGFILPIL 60

Query: 61  TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            IL K    +    R LIL PTRELAAQV+D+   YGK  +   +++ GG+    Q +KL
Sbjct: 61  EILSKCSPIKFNQVRMLILTPTRELAAQVSDSVTIYGKYLSFKSSVVFGGVKINPQMRKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD +++  +  + +EI+V DEADRMLDMGFI  I+ I  ++P  +Q
Sbjct: 121 RDGVDILVATPGRLLDLYSKNAVKFDTLEIIVFDEADRMLDMGFIHDIKRILKILPQKKQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT +++++ ++++ + NP  I V   +ST +T++  ++    ++ KK ALL  L+
Sbjct: 181 TLMFSATFSNDIRILAKSLVNNPVEISVTPRNSTVKTVKQ-WIHPVDKF-KKQALLIYLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q + +    ++F   K     +   LEK+  S   IHGN  Q +R + L++FK   + ++
Sbjct: 239 Q-EHSWYQVLVFSRTKHGANRIATQLEKKKISATVIHGNKSQGARTRALADFKNAKVNVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV NFD+P   E+Y+HRIGRTGRAG  G+A +LV+ ++ K +  
Sbjct: 298 VATDIAARGIDIDQLPHVVNFDLPRVPEDYVHRIGRTGRAGSKGEAISLVSVDEAKQLFD 357

Query: 360 IEKLIEKKVD 369
           IE+LI+ K+D
Sbjct: 358 IERLIQNKLD 367


>gi|134296873|ref|YP_001120608.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134140030|gb|ABO55773.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
           G4]
          Length = 486

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 232/372 (62%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTFYTEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAET+            +K  LL 
Sbjct: 181 RRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|322833775|ref|YP_004213802.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
 gi|321168976|gb|ADW74675.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
          Length = 470

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 161/371 (43%), Positives = 236/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS +++ AV + GY +PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV--RMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L    A+   R P R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    Q  
Sbjct: 61  NMLSHTNAQFKGRRPVRALILTPTRELAAQIGENVQAYSKYLTLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVLI TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLIATPGRLLDLEHQRAVDLSQVEILVLDEADRMLDMGFIHDIRRLLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L NP  +EV   ++ +  IE      +    +K  LL Q
Sbjct: 181 RQNLLFSATFSDEIKGLASKLLTNPASVEVARRNTASAQIEQSV--HFVDKKRKRELLSQ 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++   D  K  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK G+++
Sbjct: 239 MIGEGD-WKQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKAGSVR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDMLPHVVNYELPNVPEDYVHRIGRTGRAEATGEAISLVCVDEHKLL 357

Query: 358 DAIEKLIEKKV 368
             IE+L+++++
Sbjct: 358 RDIERLLKREI 368


>gi|320546379|ref|ZP_08040695.1| ATP-dependent RNA helicase DeaD [Streptococcus equinus ATCC 9812]
 gi|320448989|gb|EFW89716.1| ATP-dependent RNA helicase DeaD [Streptococcus equinus ATCC 9812]
          Length = 530

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 155/371 (41%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ AV  AG+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELNLSEAILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R  V+    L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L 
Sbjct: 61  DKIDTSRNLVQ---ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + ++E L++DEAD ML+MGF+  I+ I S VP TRQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLEHVETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + ++++   F+QNP+ ++V     T + ++  ++    Q   K   + +L+ 
Sbjct: 178 LLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQ--DKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +G+    IHG++DQ  R+++L +FK   I ++V
Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKQGQSITFVAPNEMGYLSII 354

Query: 361 EKLIEKKVDWL 371
           EKL +K++  L
Sbjct: 355 EKLTKKRMKGL 365


>gi|157160272|ref|YP_001457590.1| ATP-dependent RNA helicase RhlE [Escherichia coli HS]
 gi|157065952|gb|ABV05207.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli HS]
          Length = 454

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 160/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  I+V   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIKVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|170734034|ref|YP_001765981.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169817276|gb|ACA91859.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 486

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 160/372 (43%), Positives = 232/372 (62%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAE++            +K  LL 
Sbjct: 181 QRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|37525462|ref|NP_928806.1| ATP-dependent RNA helicase RhlE [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784890|emb|CAE13804.1| ATP-dependent RNA helicase RhlE [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 434

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 173/427 (40%), Positives = 256/427 (59%), Gaps = 14/427 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LGLS  ++ AV + GY  PTPIQ + IP+VL   D+   AQTGTGKTA F LPML
Sbjct: 7   MNFKSLGLSADILRAVEEQGYSAPTPIQQQAIPVVLAGKDLLASAQTGTGKTAGFTLPML 66

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L       KGR   R  R LIL PTRELAAQV +N   Y K   L   ++ GG+    
Sbjct: 67  QRLNDSPIQMKGR---RPVRALILTPTRELAAQVGENVRDYSKYLRLRSLVVFGGVSINP 123

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G D+L+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +
Sbjct: 124 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSRVEILVLDEADRMLDMGFIHDIRRVLNKL 183

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT +D+++ ++   L++P  +EV   +S +E IE   +  +    +K  L
Sbjct: 184 PPKRQNLLFSATFSDDIKSLASKLLRDPVSVEVARRNSASEQIEQ--LVHFVDKKRKGEL 241

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L+ S++  +  ++F   K     L   L K G +  AIHGN  Q +R + L++FK+G
Sbjct: 242 LSFLIGSRN-WQQVLVFTRTKHGANRLAEQLNKDGVTASAIHGNKSQGARTRALADFKDG 300

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+AARGLDI  + +V NF++PN AE+Y+HRIGRTGRA   G+A +LV  ++ 
Sbjct: 301 RIRVLVATDIAARGLDIDQLPYVVNFELPNVAEDYVHRIGRTGRADATGQALSLVCVDEH 360

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN--PIPQKSTGFDRRKKN 412
           K +  IE+L+++++  +       +P ++   I     AR +N      + +G   R+++
Sbjct: 361 KLLKDIERLLKREIPRMAIPGYEPDPTIKAEPIQNGRQARGDNRQKNSHRRSGAPSRQRS 420

Query: 413 YSSQKSH 419
            S   SH
Sbjct: 421 SSHDVSH 427


>gi|50121729|ref|YP_050896.1| ATP-dependent RNA helicase RhlE [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612255|emb|CAG75705.1| putative ATP-dependent RNA helicase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 483

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 161/374 (43%), Positives = 237/374 (63%), Gaps = 10/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  PTP+Q + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSADILRAIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TIL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L       KG+ R R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    
Sbjct: 61  QLLTSREAQNKGKGR-RPVRALILTPTRELAAQIDENVKAYSKYLPLRSLVVFGGVSINP 119

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +
Sbjct: 120 QMMKLRGGVDILVATPGRLLDLEHQRAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKL 179

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT +DE++ ++   L NP  +EV   +S +E +       +    +K  L
Sbjct: 180 PAKRQNLLFSATFSDEIKALANKLLTNPASVEVVRRNSPSELVTQNV--HFVDKRRKREL 237

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L QL+  ++  +  ++F   K    +L   LEK G +  AIHGN  Q +R + L+NFK+G
Sbjct: 238 LSQLI-GENNWQQVLVFTRTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANFKDG 296

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ 
Sbjct: 297 GIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCVDEH 356

Query: 355 KHIDAIEKLIEKKV 368
           K +  IE+L+++++
Sbjct: 357 KLLRDIERLLKREI 370


>gi|152999828|ref|YP_001365509.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151364446|gb|ABS07446.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 411

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 175/410 (42%), Positives = 245/410 (59%), Gaps = 20/410 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L+  +V  +   GY  PTPIQ++ IP +L + DV   A TGTGKTA+F LP+L
Sbjct: 1   MSFSVLSLNSTLVNTLASLGYESPTPIQLEAIPTILAKRDVMAGAHTGTGKTAAFALPIL 60

Query: 61  ------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                 + L++  A VR  R L+L PTRELA QV  +F KY K  ++ V +  GG+  +A
Sbjct: 61  HHLLALSPLQELTA-VRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDA 119

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q      G DVLI TPGR+LDH  +G L +  + +LV DEADRMLDMGF+  IQ +   V
Sbjct: 120 QVAVFNAGIDVLIATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQV 179

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQTLLFSAT+   +  +S+  L++PK IEV   ++TA  IE    A  A   +K  L
Sbjct: 180 PSDRQTLLFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDA--DRKTEL 237

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +  L++S++     +IF   K+ V  L   L K      A HG++ Q +R K+L  FK+G
Sbjct: 238 VSHLVRSKN-WHQVLIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQG 296

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            IQ++VA+D+AARGLDI ++ +V NF++P  AE+YIHRIGRTGRAG  G A TL ++ED 
Sbjct: 297 KIQVLVATDVAARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDA 356

Query: 355 KHIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
             ++ +E +++K++   WL G      P   K+D       R+N    QK
Sbjct: 357 LLLEEVEVVLDKRLPQQWLPG----FEPDFNKMD----TEPRRNGKAAQK 398


>gi|156934713|ref|YP_001438629.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156532967|gb|ABU77793.1| hypothetical protein ESA_02548 [Cronobacter sakazakii ATCC BAA-894]
          Length = 474

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 160/375 (42%), Positives = 238/375 (63%), Gaps = 14/375 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP+++ A+ + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L       KGR  VR    LIL PTRELAAQV +N  +Y K  ++   ++ GG+    
Sbjct: 61  QRLTANQPHPKGRRPVR---ALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G DVLI TPGR+LD  ++  + ++ +E+LV+DEADRMLDMGFI  I+ + + +
Sbjct: 118 QMMKLRGGVDVLIATPGRLLDLEHQNAVKLDQVEVLVLDEADRMLDMGFIHDIRRVLAKL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCA 233
           P  RQ LLFSAT +D+++ ++E  L NP+ +EV   ++ +E + +H     +    +K  
Sbjct: 178 PPKRQNLLFSATFSDDIKSLAEKLLHNPEEVEVARRNTASEQVTQHVH---FVDKKRKRE 234

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+      +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK 
Sbjct: 235 LLSYLI-GDGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKT 293

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I+++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++
Sbjct: 294 GGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDE 353

Query: 354 IKHIDAIEKLIEKKV 368
            K +  IE+L+++++
Sbjct: 354 HKLLRDIERLLKREI 368


>gi|156740947|ref|YP_001431076.1| DEAD/DEAH box helicase domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156232275|gb|ABU57058.1| DEAD/DEAH box helicase domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 450

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 153/365 (41%), Positives = 221/365 (60%), Gaps = 8/365 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F      P++   + D GY  PTPIQ + IP  L   DV GIAQTGTGKTA+FVLP+L
Sbjct: 1   MSFEIFRFHPQINAGIRDLGYHTPTPIQEQVIPHALAGRDVIGIAQTGTGKTAAFVLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G R RVR    +I+ PTRELA Q+    E  GK+  +    L GG+ ++ Q ++L
Sbjct: 61  HHLMRGPRGRVR---AMIVTPTRELAEQIQGVIEALGKHTGIRSVTLYGGVGYQGQIQRL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG ++ +  PGR+LDH  RG L ++++E+L +DEAD+M DMGF+P ++ I  L P  RQ
Sbjct: 118 RRGVEIAVVCPGRLLDHLERGTLTLDHLEVLTLDEADQMFDMGFLPDVRRILRLAPVERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM D ++ ++   L++P  +++   S+   T+ H           K +LL +LL
Sbjct: 178 TMLFSATMPDAVRSLAREALRDPLTVQIGR-SAPVATVTHAIYPVPEHL--KTSLLIELL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  ++ +IF   K     L  +L + G+   ++HGN+ Q  R   L  F+ G  Q++
Sbjct: 235 ERTDA-ESVLIFTRTKHRAQRLGDTLARLGYRATSLHGNLSQNRRQAALDGFRSGRYQIL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARG+D+  + HV N+D+P  AE Y HRIGRTGRA R G AFTLV + D   + A
Sbjct: 294 TATDIAARGIDVARISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRGDTAMVRA 353

Query: 360 IEKLI 364
           IE+LI
Sbjct: 354 IERLI 358


>gi|238028570|ref|YP_002912801.1| ATP-dependent RNA helicase [Burkholderia glumae BGR1]
 gi|237877764|gb|ACR30097.1| ATP-dependent RNA helicase [Burkholderia glumae BGR1]
          Length = 483

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 162/372 (43%), Positives = 234/372 (62%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLAEPLVRAVNELGYNEPTPIQTQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L   +       R  R LIL PTRELAAQV ++   YGK   L   ++ GG+    Q 
Sbjct: 61  QRLNAFQPANANGKRAVRALILTPTRELAAQVEESVRAYGKYLKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + ++ ++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSQLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            +K  +L 
Sbjct: 181 KRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKREMLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + LS FK GT+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALSEFKAGTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV N+++PN  E+Y+HRIGRTGRAG +G+A +LV  ++   
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKPL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|332296357|ref|YP_004438280.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
           DSM 14796]
 gi|332179460|gb|AEE15149.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
           DSM 14796]
          Length = 531

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 165/383 (43%), Positives = 240/383 (62%), Gaps = 12/383 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ LS   V A+ + G+ +P+ IQ +TIP+V+Q  DV G AQTGTGKTA+F +P   I
Sbjct: 7   FGEIELSKDTVLALKEMGFEEPSEIQKQTIPIVMQGFDVIGQAQTGTGKTAAFGIP---I 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +EK   + R+P++L+L PTRELA QVA+   K  K   L V  + GG   E Q K L+ G
Sbjct: 64  VEKT-TKDRVPQSLVLTPTRELAIQVAEEISKISKYRGLRVVPIYGGQSIERQIKALKNG 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT-SLVPFTRQTL 181
           A V+I TPGR++DH  RG L ++ I ILV+DEAD MLDMGFI  I+ I  S+     QTL
Sbjct: 123 AQVIIGTPGRLIDHIKRGTLFLSKISILVLDEADEMLDMGFIEDIETIMKSIKNENIQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +  +++ +++NPK + ++    T    +      Y +   K   L ++L++
Sbjct: 183 LFSATMPDPIMALTKKYMKNPKVVSISKEQLTVPLTDQF----YCEAKDKLEALCRILET 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D M   IIFC  KK V  L  SL  +G+S   +HG++ Q  R K++ +F+E  ++++VA
Sbjct: 239 ED-MDKTIIFCRTKKGVDELVASLNTRGYSAEGLHGDLTQAQRDKVMKSFRERNLEVLVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI DV HV NFD+P   E+Y+HRIGRTGRAG+ G A T +   + + +  IE
Sbjct: 298 TDVAARGLDISDVSHVINFDIPQDPESYVHRIGRTGRAGKSGIAITFITPREFRQLRLIE 357

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
           K+I   +     ++ S++  LEK
Sbjct: 358 KVIRTTIK--RKEVPSISDLLEK 378


>gi|163800537|ref|ZP_02194438.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           AND4]
 gi|159175980|gb|EDP60774.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           AND4]
          Length = 416

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 160/398 (40%), Positives = 251/398 (63%), Gaps = 9/398 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++FADLG++ ++V  +     V PTP+Q K+IP +L+  D+   AQTGTGKTA+F LP++
Sbjct: 3   VNFADLGIAQQLVDTLSGMNIVTPTPVQEKSIPHILEGKDLLAAAQTGTGKTAAFGLPII 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++ + R   P+ LIL PTRELA QV DN  +Y  N NL +  + GG     Q KKLE
Sbjct: 63  QSVQQNK-RDGAPKALILVPTRELAQQVMDNLIQYSANTNLNIVCVYGGTSIGVQKKKLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+LI TPGR+LDH   G +++    ILV+DEADRMLDMGF P +Q I   +P  +QT
Sbjct: 122 EGADILIATPGRLLDHLFNGNVIIAKTGILVLDEADRMLDMGFWPDLQRILRRLPQDKQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT  + ++ ++   +  P  +EV+  ++TAE ++           +K  LL  L+ 
Sbjct: 182 MLFSATFEERIKTIAYKLMDTPIEVEVSPANTTAENVKQMVYPV--DKKRKRELLAYLIG 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++  +  ++F   K+    L   L+  G    +I+G+  Q +R + L +FKEG ++ ++
Sbjct: 240 SRN-WQQVLVFTKTKQGSDELVKELKLDGIKAVSINGDKSQGARQRALDDFKEGKVRALI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L++ ++   + AI
Sbjct: 299 ATDVAARGLDIQALEQVVNFDLPFKAEDYVHRIGRTGRAGKSGLAVSLMSHDEEYLLTAI 358

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKN 396
           E L++K++  +WL G   SL   +E+++  +++  RK+
Sbjct: 359 ENLLDKRLPQEWLEGFEPSL---IEEVEPERNSGGRKS 393


>gi|222149464|ref|YP_002550421.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
 gi|221736447|gb|ACM37410.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
          Length = 484

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 156/374 (41%), Positives = 229/374 (61%), Gaps = 4/374 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLSP VV  +   G+  PTPIQ + IP+V+   D+ G+AQTGTGKTA+F LP++ +
Sbjct: 20  FNELGLSPTVVATLTQLGFETPTPIQAQGIPVVMAGRDLIGLAQTGTGKTAAFGLPIIEL 79

Query: 63  LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L K   R   R  RTLIL PTREL  Q+ DN   + +   + +  ++GG     Q  +LE
Sbjct: 80  LMKDERRPDNRTTRTLILAPTRELVNQIGDNLRSFIRKTPIKINQVVGGASINKQQLQLE 139

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+LD  +R  + +  +  LV+DEAD+MLD+GFI  ++ I  +VP  RQT
Sbjct: 140 RGTDILVATPGRLLDLISRNAISLRAVTHLVLDEADQMLDLGFIHDLRKIAKMVPAKRQT 199

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +  ++ +FL NP  +EV+ P   A+ +E  +V      + K  LL++ L 
Sbjct: 200 LLFSATMPKAIADLAGSFLNNPVTVEVSPPGKAADKVEQ-YVHFVNGQNHKTELLKKTLA 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ I+F   K     L   LE  GFSV +IHGN  Q  R + L  F++G+I+ ++
Sbjct: 259 DHPDGRS-IVFLRTKHGAEKLMKHLEITGFSVASIHGNKSQGQRERALKGFRDGSIRTLI 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DIP V HVFN+D+P   + Y+HRIGRT RAGR G A      ++ + +  I
Sbjct: 318 ATDVAARGIDIPAVSHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCGPDEARLLRDI 377

Query: 361 EKLIEKKVDWLNGD 374
           E+L+  ++   +G+
Sbjct: 378 ERLMGIEISVASGE 391


>gi|138893877|ref|YP_001124330.1| DEAD-box ATP dependent DNA helicase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265390|gb|ABO65585.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Geobacillus
           thermodenitrificans NG80-2]
          Length = 467

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 162/381 (42%), Positives = 241/381 (63%), Gaps = 8/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS +V+ A+   G+ + TPIQ KTIPL LQ  DV G AQTGTGKTA+F +P   I
Sbjct: 4   FQELGLSKEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIP---I 60

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +EK   +  + + L++ PTRELA QV++   K G    + V  + GG   E Q + L++ 
Sbjct: 61  VEKVDVKNGVIQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGRI+DH NRG L + ++  +V+DEAD ML+MGFI  I+ I   VP  RQTLL
Sbjct: 121 PHVIVGTPGRIIDHINRGTLRLEHVRTVVLDEADEMLNMGFIEDIEAILRHVPTERQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+ +P+ ++V     T   I+  ++  + +  KK  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIAERFMNDPELVKVKAKEMTVPNIQQYYLEVHEK--KKFDILTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+F   K+ V  L  +L  +G++   IHG++ Q  R+ +L  FKEG+I+++VA+
Sbjct: 239 -APELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   +I  +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIER 357

Query: 363 LIEKKVDWLNGDLSSLNPPLE 383
             ++K++ +     +LN  LE
Sbjct: 358 TTKRKMERMKP--PTLNEALE 376


>gi|323938152|gb|EGB34412.1| DEAD/DEAH box helicase [Escherichia coli E1520]
          Length = 454

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 160/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +++++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSNDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|187733875|ref|YP_001881017.1| ATP-dependent RNA helicase RhlE [Shigella boydii CDC 3083-94]
 gi|187430867|gb|ACD10141.1| putative ATP-dependent RNA helicase RhlE [Shigella boydii CDC
           3083-94]
 gi|320175218|gb|EFW50327.1| ATP-dependent RNA helicase RhlE [Shigella dysenteriae CDC 74-1112]
 gi|320183285|gb|EFW58140.1| ATP-dependent RNA helicase RhlE [Shigella flexneri CDC 796-83]
 gi|332097530|gb|EGJ02510.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 3594-74]
          Length = 454

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 160/372 (43%), Positives = 235/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK   I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSSDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|197116587|ref|YP_002137014.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
 gi|197085947|gb|ACH37218.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
          Length = 453

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 167/415 (40%), Positives = 240/415 (57%), Gaps = 10/415 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L LS  ++ A+   GY +PTPIQ ++IPL L   D+ G AQTGTGKTASFVLP L
Sbjct: 1   MSFETLNLSAPILKAIQACGYTQPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPAL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L     R + PR L+L PTRELA QV D    YGK   +    ++GG+P+  Q   L
Sbjct: 61  ERLLTPSPLRGKGPRILVLTPTRELAIQVVDAVRSYGKFMRVRCGSILGGMPYRDQMMLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++DH +R  +  + +E+LV+DEADRMLDMGF   +  I +  P  RQ
Sbjct: 121 AQPVDIIVATPGRLIDHLDRRSINFSRLEMLVLDEADRMLDMGFSEDVDRIANAAPAERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLF+ATM D + K+++  L++P R+ V         IE     T      K  LLQ L+
Sbjct: 181 TLLFTATMDDAMAKLAQRLLKDPVRVAVEGTEVANLQIEQRLHVT-DDMRHKNRLLQHLV 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S  ++   IIF   KK+   L   L  QG +  A+HG++ Q +R K ++  + G ++L+
Sbjct: 240 -SDASVTKAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNKTITMMRRGKVRLL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P  AE+Y+HRIGRTGRAG  G A +  +  ++ ++D 
Sbjct: 299 VATDVAARGLDVTGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMNEVVYLDR 358

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           IE+   KK+     +      PL + +      ARK  P       FD RKK ++
Sbjct: 359 IERFTGKKLPMHVVEGFEPTRPLRRGNSGAPG-ARKGRP------SFDPRKKGFA 406


>gi|160880140|ref|YP_001559108.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160428806|gb|ABX42369.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
           ISDg]
          Length = 514

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 158/364 (43%), Positives = 234/364 (64%), Gaps = 5/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F ++ L   ++ A+ + G+++P+PIQ KTIPLVL+  D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MNFNEMNLIKPLLQAIKEEGFIEPSPIQKKTIPLVLEGRDILGCAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L KG       R LI+ PTRELA Q+ ++FE +GK  +L  +++ GG+    Q   L+
Sbjct: 61  QSLSKGEGS--GVRALIITPTRELAIQIYESFECFGKYTSLKQSVIYGGVGQSLQVNSLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+LI TPGR+ D   +G + ++ IE+ V+DEAD+MLDMGF+  I+ +  L+P TRQT
Sbjct: 119 AGIDILIATPGRLNDLIGQGYITLDAIEMFVLDEADQMLDMGFLNDIKKVIKLLPKTRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++ ++ N L NP+ I+++  +ST ++IE      +     K +LL  L++
Sbjct: 179 LLFSATMPKEIESLATNLLNNPEIIKISPVTSTVDSIEQSVY--FVDRLNKISLLTSLIK 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  M   ++F   K     +   L K      AIHG   Q +R   LS+FKEG I+++V
Sbjct: 237 -EHKMSRVLVFTKTKHGADRVADKLNKAKVKTQAIHGGKGQNARQTALSDFKEGKIKVLV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++ +V N+D+PN+AE YIHRIGRTGRAG  G A  L   +D+ ++  I
Sbjct: 296 ATDIAARGIDISELSYVVNYDIPNQAEIYIHRIGRTGRAGLGGNAINLCNIDDMDYLREI 355

Query: 361 EKLI 364
           EK I
Sbjct: 356 EKHI 359


>gi|254422154|ref|ZP_05035872.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335]
 gi|196189643|gb|EDX84607.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335]
          Length = 469

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 165/404 (40%), Positives = 241/404 (59%), Gaps = 39/404 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL  +++ A+ D GY  PTPIQ+++IPLV+  HDV   AQTGTGKTA F LP+L
Sbjct: 2   MSFESLGLRTEILRAIADQGYTDPTPIQVQSIPLVIAGHDVMASAQTGTGKTAGFTLPLL 61

Query: 61  T-------------------------------ILEKGRARV-----RMPRTLILEPTREL 84
                                           IL K +  V     R  R LI+ PTREL
Sbjct: 62  QRLCEGLPLQTSPTRNQTSIRSDASRNGTSRPILRKRKGSVSRGDHRPIRALIVTPTREL 121

Query: 85  AAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLM 144
           AAQ+ +N   Y K   +   ++ GG+    Q  KL +G D+LI TPGR+LDH  +  + +
Sbjct: 122 AAQIGENVNAYSKYLPVRSTVIFGGVKINPQISKLRQGVDILIATPGRLLDHVGQRTVDL 181

Query: 145 NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKR 204
           + +E+LV+DEADRMLDMGFI  I+ I +LV   RQTLLFSAT +  ++K++++FL++PK 
Sbjct: 182 SQVEVLVLDEADRMLDMGFIHDIRKILALVSEERQTLLFSATFSKPIKKLADSFLRSPKT 241

Query: 205 IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHS 264
           IEV   ++TA+T++   V       +K  LL  ++ S++  +  ++F   K     L   
Sbjct: 242 IEVARQNATADTVDQ--VVYPVDRVRKSELLSFIIGSRN-WQQVLVFTRTKHGANRLTKH 298

Query: 265 LEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPN 324
           L+K G +  AIHGN  Q +R + L+ FK   ++++VA+D+AARGLDI  + HV NF++PN
Sbjct: 299 LQKDGLTAAAIHGNKSQGARTRALAAFKARDVRVLVATDIAARGLDIDLLPHVVNFELPN 358

Query: 325 RAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            AE+Y+HRIGRTGRAG  G+A +LV  ++   +  IE+L+ + +
Sbjct: 359 VAEDYVHRIGRTGRAGNEGQAVSLVCVDEKDLLRGIERLLRRDI 402


>gi|198283274|ref|YP_002219595.1| DEAD/DEAH box helicase domain-containing protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667828|ref|YP_002425861.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198247795|gb|ACH83388.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218520041|gb|ACK80627.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 418

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 160/372 (43%), Positives = 233/372 (62%), Gaps = 9/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  +  A  + GY  PTPIQ + IP+V+   D+   AQTGTGKTA+F +P+L  
Sbjct: 4   FESLGLSEPIWRAAAERGYTSPTPIQEQAIPVVMSGVDLLAGAQTGTGKTAAFAMPILHK 63

Query: 63  LE--KGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L    G A  R P   R LIL PTRELAAQV  + + YG+   L   +LIGG+    Q +
Sbjct: 64  LAVTAGSAS-RAPSSVRALILVPTRELAAQVEASVQLYGRYLPLRSLVLIGGVKINPQMQ 122

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL R  D+L+ TPGR+LDH  +  + ++++EILV+DEADRMLDMGFI  I+ I +++P  
Sbjct: 123 KLRRSVDILVATPGRLLDHIQQRSVDLSHVEILVLDEADRMLDMGFIRDIRRILAVLPKK 182

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT + E++ +++  L NP  +EV   ++TA+ +     A      +K  LL  
Sbjct: 183 RQNLLFSATFSPEIRGLADGLLNNPTSVEVAARNATADNVAQRVFAV--DQDRKRELLSH 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++ +      ++F   K     L   L + G    AIHG+  Q +R + L+ FKEG +Q
Sbjct: 241 LIE-EHQWGQVLVFTRTKHGADRLARHLSQDGMQAMAIHGDKSQGARTRALAEFKEGKVQ 299

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++ HV NF++P+  E+Y+HRIGRTGRAG +G+A +LV+ E+ K +
Sbjct: 300 VLVATDIAARGIDISELPHVVNFELPHVPEDYVHRIGRTGRAGNNGQAVSLVSSEERKQL 359

Query: 358 DAIEKLIEKKVD 369
             +EKL+ +  D
Sbjct: 360 QDVEKLLRRSFD 371


>gi|260866964|ref|YP_003233366.1| RNA helicase RhlE [Escherichia coli O111:H- str. 11128]
 gi|257763320|dbj|BAI34815.1| RNA helicase RhlE [Escherichia coli O111:H- str. 11128]
 gi|323175585|gb|EFZ61180.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1180]
          Length = 454

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 235/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 CVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|196250549|ref|ZP_03149239.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
 gi|196209898|gb|EDY04667.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
          Length = 467

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 162/381 (42%), Positives = 240/381 (62%), Gaps = 8/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS +V+ A+   G+ + TPIQ KTIPL LQ  DV G AQTGTGKTA+F +P   I
Sbjct: 4   FQELGLSKEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIP---I 60

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +EK   +    + L++ PTRELA QV++   K G    + V  + GG   E Q + L++ 
Sbjct: 61  VEKVDVKNGAIQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGRI+DH NRG L + ++  +V+DEAD ML+MGFI  I+ I   VP  RQTLL
Sbjct: 121 PHVIVGTPGRIIDHINRGTLRLEHVRTVVLDEADEMLNMGFIEDIEAILRHVPTERQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+ +P+ ++V     T   I+  ++  + +  KK  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIAERFMNDPELVKVKAKEMTVPNIQQYYLEVHEK--KKFDILTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+F   K+ V  L  +L  +G++   IHG++ Q  R+ +L  FKEG+I+++VA+
Sbjct: 239 -APELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   +I  +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIER 357

Query: 363 LIEKKVDWLNGDLSSLNPPLE 383
             ++K++ +     +LN  LE
Sbjct: 358 TTKRKMERMKP--PTLNEALE 376


>gi|187476686|ref|YP_784709.1| ATP-dependent RNA helicase [Bordetella avium 197N]
 gi|115421272|emb|CAJ47777.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
          Length = 592

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 159/377 (42%), Positives = 230/377 (61%), Gaps = 18/377 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLSP ++ A+   G+ +PTP+Q   IP  +   D+   +QTG+GKTA+F+LP L
Sbjct: 1   MSFADLGLSPTILSAIEATGFSEPTPVQAAAIPRAMAGADLMVSSQTGSGKTAAFMLPAL 60

Query: 61  TILEKGRARVRMP------RTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFE 113
                 R   + P      + L+L PTRELA QVAD    YG N   L    ++GG+P+ 
Sbjct: 61  N-----RVAGQSPNKGVGVQILVLTPTRELALQVADATATYGANLPGLRTTTVVGGVPYG 115

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           AQ K L R  DVL+ TPGR++DH   G++ +N +  LV+DEADRMLDMGFI  I+ I   
Sbjct: 116 AQLKALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIER 175

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKC 232
           +P +RQTLLFSAT+   + +++E  ++ P+RIE+         I    +  YA   S K 
Sbjct: 176 LPQSRQTLLFSATLDGSVARLAEKMMREPERIEIAGHRDKHANITQSLL--YADDASHKM 233

Query: 233 ALLQQLLQSQDT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
            LL  LL+  DT +   I+F   K+   +L   L +QGFS  A+HG+++QR R + L+  
Sbjct: 234 RLLDHLLR--DTRLDQAIVFTATKRGADDLADRLSEQGFSAAALHGDMNQRQRTRTLTQL 291

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G ++++VA+D+AARG+D+  + H  NFD+P +AE+Y+HRIGRTGRAGR G A+TL   
Sbjct: 292 QRGQVRVLVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGLAYTLAVH 351

Query: 352 EDIKHIDAIEKLIEKKV 368
            +   +  IE  I + +
Sbjct: 352 SERHKVRRIEHYIGQTI 368


>gi|107023606|ref|YP_621933.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
 gi|116690690|ref|YP_836313.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|105893795|gb|ABF76960.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
           1054]
 gi|116648779|gb|ABK09420.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           HI2424]
          Length = 486

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 160/372 (43%), Positives = 232/372 (62%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAE++            +K  LL 
Sbjct: 181 QRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|319902651|ref|YP_004162379.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
 gi|319417682|gb|ADV44793.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
          Length = 422

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 157/368 (42%), Positives = 231/368 (62%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+ + GY  PTPIQ K+IP++LQ  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MTFENLKLIEPILKALQEEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K   R +  + LIL PTRELA Q+ ++FE YGK   L   ++ GG+  + Q   L+
Sbjct: 61  QKLYKTDNR-KGIKALILTPTRELAIQIGESFEAYGKYTGLKHTVIFGGVGQKPQTDDLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +LI TPGR+ D  N+G + +  ++  V+DEADRMLDMGFI  I+ I  ++P  RQT
Sbjct: 120 RGTQILIATPGRLQDLVNQGFINLKTLDFFVLDEADRMLDMGFIHDIRRILKMLPTQRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++ ++ + L NP ++EV   SST +TI       + +  +K  LL  LL+
Sbjct: 180 LFFSATMPSEIETLANSMLSNPAKVEVTPVSSTVDTISQSVY--FVEKKEKKDLLIHLLK 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   +++ ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  TI++++
Sbjct: 238 N-TAIESVLVFTRTKYGADKLARILSKSGISAEAIHGNKSQNARQRALTGFKSHTIRVLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+++PN  E Y+HRIGRTGRAG  G A +    E++ ++  I
Sbjct: 297 ATDIAARGIDVEQLSHVINYELPNVPETYVHRIGRTGRAGHEGTALSFCESEELPYLKDI 356

Query: 361 EKLIEKKV 368
           +KLI K +
Sbjct: 357 QKLIGKTI 364


>gi|306830918|ref|ZP_07464080.1| ATP-dependent RNA helicase DeaD [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426941|gb|EFM30051.1| ATP-dependent RNA helicase DeaD [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 526

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 154/371 (41%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  V  AG+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELNLSENILATVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R  V+    L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L 
Sbjct: 61  DKIDTNRNLVQ---ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L ++++E L++DEAD ML+MGF+  I+ I S VP TRQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + ++++   F+QNP+ ++V     T + ++  ++    Q   K   + +L+ 
Sbjct: 178 LLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQ--DKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L   L+ +G+    IHG++DQ  R+++L +FK   I ++V
Sbjct: 236 VNQP-ELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+HG++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYLSII 354

Query: 361 EKLIEKKVDWL 371
           EKL +K++  L
Sbjct: 355 EKLTKKRMKGL 365


>gi|229009737|ref|ZP_04166960.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM
           2048]
 gi|229055077|ref|ZP_04195508.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603]
 gi|228721261|gb|EEL72786.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603]
 gi|228751532|gb|EEM01335.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM
           2048]
          Length = 538

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 162/381 (42%), Positives = 238/381 (62%), Gaps = 8/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  
Sbjct: 4   FRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    +++ PTRELA QV +   K GK+  + +  + GG     Q + L++ 
Sbjct: 64  VDTNKEAVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLL
Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+  P+ I+V     T   I+  ++    Q  KK  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  IIF   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEGTI+++VA+
Sbjct: 239 -SPELAIIFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGTIEVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357

Query: 363 LIEKKVDWLNGDLSSLNPPLE 383
             ++KVD +  D  +L+  LE
Sbjct: 358 TTKRKVDRM--DAPTLDEALE 376


>gi|224824946|ref|ZP_03698052.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224602617|gb|EEG08794.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 438

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 148/370 (40%), Positives = 229/370 (61%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGL+P +  A+  AGY  PTP+Q  +IP  L  HD+   AQTG+GKTA+F+LP L
Sbjct: 1   MHFADLGLAPAITSALDAAGYTTPTPVQAASIPAALAGHDLLVSAQTGSGKTAAFLLPSL 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
             L E+     + PR L+L PTRELA QV  N  +YG     L    L+GG  F  Q + 
Sbjct: 61  QKLTERSTGSGQGPRILVLTPTRELAQQVEKNATEYGSQLRWLRTVCLVGGASFGYQIRA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           + R  D+++ TPGR++DH   G++  + +E+L++DEADRMLDMGFI  I+ I    P +R
Sbjct: 121 MARPVDIMVATPGRLMDHMRSGRIDFSRLEMLILDEADRMLDMGFIEDIETIVKATPDSR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT+   + K+++   ++P+RIE+    +     EH   A   ++ ++  LL  +
Sbjct: 181 QTVLFSATLDGTVGKLAQKLTRDPQRIEIAREETGGNIEEHLLYADDNRHKER--LLDHI 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ +      +IF   K     L   L  QG++   +HG++ Q  R + L++ + G +++
Sbjct: 239 LK-EAGFDQAVIFTATKIGSEELADKLSDQGYAAACLHGDMPQNWRNRTLNDLRRGRVRI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A TL   ++   + 
Sbjct: 298 LVATDVAARGIDVPTITHVVNYDLPKQAEDYVHRIGRTGRAGRDGVAITLAESKEFHKVR 357

Query: 359 AIEKLIEKKV 368
            IE+ +++++
Sbjct: 358 RIEQYLKRQI 367


>gi|167769539|ref|ZP_02441592.1| hypothetical protein ANACOL_00873 [Anaerotruncus colihominis DSM
           17241]
 gi|167668507|gb|EDS12637.1| hypothetical protein ANACOL_00873 [Anaerotruncus colihominis DSM
           17241]
          Length = 572

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 158/381 (41%), Positives = 237/381 (62%), Gaps = 14/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+GLSP++V AV D  Y + T IQ + IPL++Q  DV G + TGTGKTA+F +P +  
Sbjct: 6   FEDIGLSPELVQAVSDMNYTQATGIQAQAIPLLMQGADVIGRSSTGTGKTAAFGIPAVER 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           +E G   ++ P+ L+L PTRELA Q+AD   K+ K    + VA + GG P +AQ + L R
Sbjct: 66  IESG---LKAPQVLVLSPTRELAMQIADEMRKFAKYKPGVCVAAVYGGAPMDAQIRAL-R 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            A+++I TPGR++DH  R  L ++++  +V+DEAD ML+MGF+  IQ I +  P TRQT+
Sbjct: 122 AANIVIGTPGRVMDHMRRHTLRLDDLRTVVLDEADEMLNMGFLDDIQTILAETPDTRQTV 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   + K+++ FL +P+ +++ T   T   +E  F       ++K   L  LLQ 
Sbjct: 182 LFSATMPPAILKITDKFLHDPQTVDIRTGQRTIAAVEQFFY--RVPQARKMDALNLLLQY 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D  K  ++FCN K  V +L   L   GF    IHG++ Q  R +++ +F++G  +++VA
Sbjct: 240 HDP-KRAVVFCNTKAMVDSLTEYLSDHGFRALGIHGDMKQAGRTQVMQSFRDGKTRILVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ ++  VFNFD+P   E+YIHRIGRTGRAGR G + TLV     + +D I 
Sbjct: 299 TDVAARGIDVENIEAVFNFDIPQEFEHYIHRIGRTGRAGRTGMSHTLVCGA--RQVDTIR 356

Query: 362 KLIEKKVDWLNGDLSSLNPPL 382
           +L      ++N D+     P+
Sbjct: 357 QLRR----FINADIREAPLPI 373


>gi|253996648|ref|YP_003048712.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera
           mobilis JLW8]
 gi|253983327|gb|ACT48185.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8]
          Length = 459

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 165/405 (40%), Positives = 256/405 (63%), Gaps = 11/405 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL+P+++ A+ ++GY  PTPIQ + IP+ L   D+   AQTGTGKTA+F LP+L  
Sbjct: 12  FSTLGLAPELLRALTESGYTTPTPIQAQAIPVALAGGDLMAGAQTGTGKTAAFSLPLLQK 71

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L         P     R LIL PTRELA QV ++ + Y K+  L   ++ GG+  + Q  
Sbjct: 72  LLPLANNSTSPAKHPVRALILTPTRELAIQVEESVKAYAKHTQLRSLVVYGGVDIKTQTP 131

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G +VL+ TPGR+LDH  +  L +N +++LV+DEADRMLDMGF+P ++ I +L+P  
Sbjct: 132 HLKTGVEVLVATPGRLLDHIEQKTLQLNQVQMLVLDEADRMLDMGFMPDLKRILALLPKQ 191

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ L+FSAT ++E++K++++FL  P+ IEV   ++T + +    V   AQ S K ALL Q
Sbjct: 192 RQNLMFSATFSNEIKKLADDFLTKPQLIEVARSNATNDNVTQK-VYQVAQ-SDKEALLIQ 249

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+  D  K  I+F   K     L  SL ++G +  AIHG+ +Q+ R+K L  FK GT+ 
Sbjct: 250 LLREADA-KQVIVFTKTKLTASRLSRSLVREGIAADAIHGDKNQQERIKALDAFKAGTVS 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++A+D+AARGLDI ++  V N+++P+  E+Y+HRIGRTGRAG  G A + V+ ++ K++
Sbjct: 309 ALIATDVAARGLDISELPMVINYEIPSAPEDYVHRIGRTGRAGALGVAISFVSDDEEKYL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
             IEKLI++++     +  +L+ P  ++     +H     P+ ++
Sbjct: 369 VEIEKLIKRQI---TKETVTLDRPSARVRSHASSHKEAAAPVAKR 410


>gi|206559326|ref|YP_002230087.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia
           J2315]
 gi|198035364|emb|CAR51239.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia
           J2315]
          Length = 477

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 160/372 (43%), Positives = 232/372 (62%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAE++            +K  LL 
Sbjct: 181 QRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|323699639|ref|ZP_08111551.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. ND132]
 gi|323459571|gb|EGB15436.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
           ND132]
          Length = 369

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 156/369 (42%), Positives = 229/369 (62%), Gaps = 6/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+   L  +++  V D GY  PTPIQ + IPLVL+ HDV G+AQTGTGKTA+F LP+L
Sbjct: 1   MTFSTFSLDRRILAGVRDCGYETPTPIQEQAIPLVLKGHDVMGLAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G    R +P  L+L PTRELA Q+ +NF + G++  +    +IGG+    Q K  
Sbjct: 61  QRLLTGNKSGRALPSVLVLAPTRELALQIDENFNQLGRHTGIRCGAVIGGVGMNPQIKAF 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++  PGR++   N G + + +I+ LV+DEADRMLDMGF+P I+ I + +P  RQ
Sbjct: 121 SH-CRVIVACPGRLVRLLNNGSVSLTHIDTLVLDEADRMLDMGFMPDIKRILAKLPARRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  +++K++EN L +PK ++V   +   E++EH F AT  + ++K  LL +LL
Sbjct: 180 NLLFSATMPQDIRKLAENILNDPKTVQVAN-TQPVESVEHSFYAT--ENNRKSELLTKLL 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  ++ ++F   K    NL   L   G++   + GN+ Q  R + L  F++G+  +M
Sbjct: 237 DRAE-HQSVLVFTKTKHKAKNLARKLAGSGYNATFLQGNMSQNQRQRALDGFRDGSYDIM 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D   + HV NFD+P+  E Y HRIGRTGRAGR G A +LV  ED   +  
Sbjct: 296 VATDIAARGIDCERISHVINFDMPDTVETYTHRIGRTGRAGRSGHAVSLVTGEDKTQVRD 355

Query: 360 IEKLIEKKV 368
           IE+++  K+
Sbjct: 356 IERVMRVKL 364


>gi|259909026|ref|YP_002649382.1| ATP-dependent RNA helicase RhlE [Erwinia pyrifoliae Ep1/96]
 gi|224964648|emb|CAX56162.1| Putative ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
 gi|283479042|emb|CAY74958.1| putative ATP-dependent RNA helicase rhlE [Erwinia pyrifoliae DSM
           12163]
          Length = 471

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 160/375 (42%), Positives = 239/375 (63%), Gaps = 14/375 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L       KGR   R  R LIL PTRELAAQV +N + Y K  ++   ++ GG+    
Sbjct: 61  QLLSSHNPHPKGR---RPVRALILTPTRELAAQVGENVQDYSKYLDMRSLVVFGGVSINP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G DVL+ TPGR+LD  ++  L ++ +EILV+DEADRMLDMGFI  I+ + + +
Sbjct: 118 QMMKLRGGVDVLVATPGRLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCA 233
           P  RQ LLFSAT +DE++ ++E  L NP+++EV   ++ +E + +H  +       K+  
Sbjct: 178 PAKRQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTASEQVTQHVHLVD----KKRKR 233

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L  LL  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + LS+FK+
Sbjct: 234 ELLSLLIGRGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKD 293

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I+++VA+D+AARG+DI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++
Sbjct: 294 GKIRVLVATDIAARGIDIEELPHVVNYELPNVPEDYVHRIGRTGRAAAVGEALSLVCVDE 353

Query: 354 IKHIDAIEKLIEKKV 368
            K +  IE+++++++
Sbjct: 354 HKLLRDIERVLKREI 368


>gi|292487709|ref|YP_003530582.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora
           CFBP1430]
 gi|292898944|ref|YP_003538313.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291198792|emb|CBJ45901.1| putative ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291553129|emb|CBA20174.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora
           CFBP1430]
 gi|312171822|emb|CBX80079.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora ATCC
           BAA-2158]
          Length = 470

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 160/375 (42%), Positives = 239/375 (63%), Gaps = 14/375 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L       KGR   R  R LIL PTRELAAQV +N + Y K  ++   ++ GG+    
Sbjct: 61  QLLSSHNPHPKGR---RPVRALILTPTRELAAQVGENVQDYSKYLDMRSLVVFGGVSINP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G DVL+ TPGR+LD  ++  L ++ +EILV+DEADRMLDMGFI  I+ + + +
Sbjct: 118 QMMKLRGGVDVLVATPGRLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCA 233
           P  RQ LLFSAT +DE++ ++E  L NP+++EV   ++ +E + +H  +       K+  
Sbjct: 178 PAKRQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTASEQVTQHVHLVD----KKRKR 233

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L  LL  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + LS+FK+
Sbjct: 234 ELLSLLIGRGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKD 293

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I+++VA+D+AARG+DI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++
Sbjct: 294 GKIRVLVATDIAARGIDIEELPHVVNYELPNVPEDYVHRIGRTGRAAAVGEALSLVCVDE 353

Query: 354 IKHIDAIEKLIEKKV 368
            K +  IE+++++++
Sbjct: 354 HKLLRDIERVLKREI 368


>gi|308178183|ref|YP_003917589.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
 gi|307745646|emb|CBT76618.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
           Re117]
          Length = 642

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 156/381 (40%), Positives = 232/381 (60%), Gaps = 9/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL  +V+ ++ D GY KP+PIQ  TIPL+L+  DV G+AQTGTGKTA+F LP L+ 
Sbjct: 22  FSELGLDARVLASLADLGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFALPALSR 81

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
              L       + P+ L+L PTRELA QVA+ F  Y K   N TV  + GG P+  Q   
Sbjct: 82  MAELADTNGPAKTPQILVLAPTRELALQVAEAFTSYAKYLPNFTVLPVYGGSPYGPQLNG 141

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RGA V++ TPGR++DH N+G L ++N++ +V+DEAD ML MGF   +  I    P  +
Sbjct: 142 LRRGAQVVVGTPGRVIDHINKGSLDLSNLQYVVLDEADEMLRMGFAEEVDKILEATPEDK 201

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q  LFSATM   +++++  +L+NP+ + V +  ST   I   ++     +  K   + ++
Sbjct: 202 QVALFSATMPRTIRRIASEYLRNPQEVAVKSKQSTGTNITQRYLQVMGAH--KLDAMTRI 259

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+S+ T +  I F   K    +L   L+ +GF+  AI+G+I Q+ R + + N + G I +
Sbjct: 260 LESE-TFEGVIAFVRTKMATEDLADKLKARGFTAAAINGDIPQQQRERTIENLRSGKIDI 318

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  + HV NFD+P+  E+Y+HRIGRTGRAGR G A   +   +   + 
Sbjct: 319 LVATDVAARGLDVERISHVVNFDIPHDTESYVHRIGRTGRAGRKGDAILFMTPREKYLLR 378

Query: 359 AIEKLIEKKVDWLNGDLSSLN 379
           AIEK   + V  +   L SL+
Sbjct: 379 AIEKATRQPVTQMQ--LPSLD 397


>gi|126173490|ref|YP_001049639.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125996695|gb|ABN60770.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 411

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 174/410 (42%), Positives = 247/410 (60%), Gaps = 20/410 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L+ K+V  +   G+  PTPIQ++ IP +L + DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFSVLSLNSKLVNTLASLGFESPTPIQLEAIPAILAKRDVMAGAQTGTGKTAAFALPIL 60

Query: 61  ------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                 + L++  A V+  R L+L PTRELA QV  +F KY K  ++ V +  GG+  +A
Sbjct: 61  HHLLALSPLQELTA-VKPIRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDA 119

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q      G DVLI TPGR+LDH  +G L +  + +LV DEADRMLDMGF+  IQ +   V
Sbjct: 120 QVAVFNAGIDVLIATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQV 179

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQTLLFSAT+   +  +S+  L++PK IEV   ++TA  IE    A  A   +K  L
Sbjct: 180 PSDRQTLLFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDA--DRKTEL 237

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +  L++S++     +IF   K+ V  L   L K      A HG++ Q +R K+L  FK+G
Sbjct: 238 VSHLVRSKN-WHQVLIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQG 296

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            IQ++VA+D+AARGLDI ++ +V NF++P  AE+YIHRIGRTGRAG  G A TL ++ED 
Sbjct: 297 KIQVLVATDVAARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDA 356

Query: 355 KHIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
             ++ +E +++K++   WL G      P   K++       R+N    QK
Sbjct: 357 LLLEEVEVVLDKRLPQQWLPG----FEPDFNKME----TEPRRNGKAAQK 398


>gi|89074347|ref|ZP_01160829.1| ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89049834|gb|EAR55375.1| ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 455

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 155/365 (42%), Positives = 224/365 (61%), Gaps = 4/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL+  +V AV + GY  PTPIQ K IP+ L   ++   AQTGTGKTA FVLP+L
Sbjct: 1   MPFSKLGLNDSIVKAVTEMGYTSPTPIQEKAIPVALTGKNLMAAAQTGTGKTAGFVLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L+ G + R +  R LIL PTRELA QV DN ++Y K+ NL    + GG+ +E Q ++L
Sbjct: 61  QMLDDGTKVRAKRIRALILAPTRELAVQVEDNIKQYSKHLNLASMAMYGGVDYEPQKRRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + IE LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IEGVDILVATPGRLLDMYTKRAIHFDAIETLVLDEADRMLDMGFIEDINKIVERLPVDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT++D+++ +++  ++NP  I V   +S    I+   V        K ALL  L+
Sbjct: 181 NMLFSATLSDQVRFLAKTAVRNPIEISVAKDASADPKIDQWLVTV--DKDMKSALLSSLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q Q      +IF   K     L   LEK+G S  + H    Q  R ++L +FK G +Q +
Sbjct: 239 QEQ-KWDQALIFIETKHGAAKLVTQLEKRGISAESFHSGRSQAVRSQLLEDFKNGKLQYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ +A+RG+DI  +  V N+D+P   E Y+HRIGRTGRAG  G+A + V++++ K++  
Sbjct: 298 IATGVASRGIDIEQLTRVVNYDLPFPPEEYVHRIGRTGRAGASGEAISFVSRDNFKNLCM 357

Query: 360 IEKLI 364
           IE L+
Sbjct: 358 IESLL 362


>gi|238920509|ref|YP_002934024.1| ATP-dependent RNA helicase RhlE [Edwardsiella ictaluri 93-146]
 gi|238870078|gb|ACR69789.1| ATP-dependent RNA helicase RhlE [Edwardsiella ictaluri 93-146]
          Length = 440

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 167/420 (39%), Positives = 255/420 (60%), Gaps = 10/420 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL  +++ AV + GY +PTPIQ + IP+VLQR D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLCAELLRAVEEQGYREPTPIQQQAIPVVLQRRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +L +    G+ R R  R LIL PTRELAAQ+ +N  +Y ++  L   ++ GG+    Q 
Sbjct: 61  QLLHQNPKSGKGR-RPVRALILTPTRELAAQIGENVREYSRHLPLRSLVVFGGVSINPQM 119

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 120 MKLRGGVDVLVATPGRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPA 179

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
            RQ LLFSAT +DE++ ++ + L NP  +EV   ++ +E + +H  +       +K  LL
Sbjct: 180 KRQNLLFSATFSDEIKALAASLLHNPAEVEVARRNTASELVTQHVHL---VDKKRKRELL 236

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ ++D  +  ++F   K    +L   L K G S  AIHGN  Q +R + L++FK G 
Sbjct: 237 SFLIGTRD-WRQVLVFTRTKYGANHLAEQLNKDGISAAAIHGNKSQGARTRALADFKSGD 295

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+AARGLDI  + +V N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K
Sbjct: 296 IRVLVATDIAARGLDIDQLPYVVNYELPNVPEDYVHRIGRTGRAQATGEALSLVCVDEHK 355

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +  IE+L+++ +  +       +P ++   I       + N    + +G  RR +   S
Sbjct: 356 LLRDIERLLKRPIPRMAIAGYEPDPSIKAEPIQNGRQGGRQNSGRTERSGQGRRAEGQRS 415


>gi|269838391|ref|YP_003320619.1| DEAD/DEAH box helicase domain-containing protein [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787654|gb|ACZ39797.1| DEAD/DEAH box helicase domain protein [Sphaerobacter thermophilus
           DSM 20745]
          Length = 526

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 155/360 (43%), Positives = 224/360 (62%), Gaps = 6/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ A+   G+ +PTPIQ + IPL+L   D+   AQTGTGKTA+F LP   I
Sbjct: 4   FADLGLSEPVLKAIDAVGFEEPTPIQREAIPLLLSGRDLIAQAQTGTGKTAAFALP---I 60

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E+ +   R P+ L+L PTRELA QVA  F + G+  +  V  + GG P E Q + L   
Sbjct: 61  IERLQPNGRRPQALVLAPTRELAVQVAQTFHQLGRVRDTRVLAVYGGQPIERQLRALRHP 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +V++ TPGR++DH  R  L ++N+  +VIDEAD MLDMGFI  ++ I   VP  RQT L
Sbjct: 121 VEVVVGTPGRVMDHIRRETLDLSNVSTVVIDEADEMLDMGFIEDVEWILDHVPAERQTAL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ D +  ++  +L++P R+ V     T   IE  +V    Q +K  AL + L    
Sbjct: 181 FSATIPDRVAALARRYLRDPARVAVEPERVTVPQIEQTYVEVV-QRAKVEALTRIL--DM 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T  + IIFC  K+ V  L   L+  G++  A+HG++ Q  R ++++ F+ G  +L++A+
Sbjct: 238 ETPPSAIIFCRTKRGVDELTQQLQSLGYAAEALHGDLSQVQRDRVMARFRSGQAELLIAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A TLV   + + +  IE+
Sbjct: 298 DVAARGLDVEGITHVINYDIPGDPESYVHRIGRTGRAGRAGAAITLVTPRERRLLREIER 357


>gi|218676343|ref|YP_002395162.1| Superfamily II DNA and RNA helicase [Vibrio splendidus LGP32]
 gi|218324611|emb|CAV26155.1| Superfamily II DNA and RNA helicase [Vibrio splendidus LGP32]
          Length = 428

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 168/419 (40%), Positives = 253/419 (60%), Gaps = 13/419 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P++V A+ + GY K TPIQ K IP+  + HD+   AQTGTGKTA+F LP++
Sbjct: 1   MSFSSQGFAPELVKALTECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPVI 60

Query: 61  T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +L  G+   R   R LIL PTRELAAQ+A N + Y K   L+V+ + GG    +Q ++
Sbjct: 61  QHLLNSGKKASRGTARGLILAPTRELAAQIAQNIKDYVKYTELSVSAVYGGNKMSSQVRQ 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H   G + + N+E LV DEADR+LDMGFI  ++ I   V  + 
Sbjct: 121 LELGVDILVATPGRLEEHLEAGNVSIANLEFLVFDEADRILDMGFINAVRKIMLDVETSP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L ++S + L+ PKRI V   +STA T+ H  V       +K  LL +L
Sbjct: 181 QIMMFSATTSTQLNQLSVDILRKPKRISVERENSTAATVGH--VVYPVDQERKTELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F N K+   ++   L+  G      HG+  Q +R + L +FKEG  ++
Sbjct: 239 I-GRKNWRQVLVFVNYKETANDVVKELKLDGIKAVLCHGDKAQSARRRALDDFKEGRARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V +E+   + 
Sbjct: 298 MVATDVAARGLDIEDLPHVINYDMPFLAEDYVHRIGRTGRAGKQGHAISFVNREEELTVV 357

Query: 359 AIEKLIE---KKVDWLNGDLSSLNPPLEKIDIA---QHNHARKNNP--IPQKSTGFDRR 409
            +EKLI+   ++V+    +    +  +EK++     ++   RKNN    PQ     +RR
Sbjct: 358 QVEKLIQQRIRRVEQPGYEPKKRDAYIEKLNTKSAYKNRQGRKNNANEEPQDQASAERR 416


>gi|145219726|ref|YP_001130435.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205890|gb|ABP36933.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeovibrioides
           DSM 265]
          Length = 412

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 156/370 (42%), Positives = 231/370 (62%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L +   ++ A+ + GY  PTPIQ + IP+VL+  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MQFSSLHIIDPILQALQEEGYSHPTPIQAEAIPVVLKGGDILGCAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L + R   R++  R+LI+ PTRELA Q+ ++F  YG++  LT  ++ GG+    Q  +
Sbjct: 61  QRLGESRVQGRIKKIRSLIVTPTRELAIQIGESFSAYGRHTPLTNTVIFGGVNQNPQISR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+L+ TPGR+LD  N+G + ++++EILV+DEADRMLDMGFI  I+ + + +P  +
Sbjct: 121 LKNGVDILVATPGRLLDLMNQGFINLHDVEILVLDEADRMLDMGFIHDIRKVLAALPKEK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  ++ ++S   L NP +I V  PSST E I       +     K  LL  L
Sbjct: 181 QSLFFSATMPPDIVRLSSTILHNPAKISVTPPSSTVEIINQQIY--FVDKGNKSPLLVHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L++ D +   ++F   K     +   L K G +  AIHGN  Q +R + LSNFK    ++
Sbjct: 239 LKNPD-ITTALVFTRTKHGADKVVKHLLKNGITAEAIHGNKAQNARQRALSNFKSQKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ ++ HV N+D  N  E Y+HRIGRTGRAG  G A +    E+  ++ 
Sbjct: 298 LVATDIAARGIDVDELQHVINYDTSNIPETYVHRIGRTGRAGASGTAISFCDAEEKAYLK 357

Query: 359 AIEKLIEKKV 368
            IEKLI K +
Sbjct: 358 DIEKLIAKSI 367


>gi|110638956|ref|YP_679165.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110281637|gb|ABG59823.1| possible ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 446

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 165/386 (42%), Positives = 237/386 (61%), Gaps = 8/386 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   ++ A+ + GY  PTPIQ + IP VLQ  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MLFQDLKLIDPILKALSEEGYTTPTPIQSQAIPYVLQGKDLLGCAQTGTGKTAAFSIPIL 60

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L  +K   R R  R+LI+ PTRELA Q+ ++ + YGK   LT  ++ GG+    Q   
Sbjct: 61  QLLSVKKSTDRKRPIRSLIVTPTRELAIQIGESLQAYGKYTGLTSTVIFGGVNQSRQVTA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G DVL+ TPGR+LD  N+G + + +IEI V+DEADRMLDMGF+  ++ +   +P  R
Sbjct: 121 LQNGIDVLVATPGRLLDLMNQGFISLRHIEIFVLDEADRMLDMGFVHDVRRLLLALPAKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+ K+++N L NP ++EV   SSTA+TI+      +     K  LL ++
Sbjct: 181 QSLFFSATMPPEIVKLADNILVNPSKVEVTPVSSTADTIKQFMY--FVDRGNKNNLLVEV 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ    +K  ++F   K     +   L +      AIHGN  Q +R   L+NFK  T ++
Sbjct: 239 LQDPK-IKTCLVFTRTKHVADKVVKMLAEHKIKAEAIHGNKSQNARQNALTNFKAQTTRI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ ++  V N+++PN  E Y+HRIGRTGRAG  G AF+    E+  ++ 
Sbjct: 298 LVATDIAARGIDVDNLEFVINYEIPNIPETYVHRIGRTGRAGAKGTAFSFCDAEEKAYLK 357

Query: 359 AIEKLIEKKVDWLNGD---LSSLNPP 381
            IEKLI KK+  ++     L   NPP
Sbjct: 358 DIEKLISKKIPVIDEHPYPLMDHNPP 383


>gi|333007150|gb|EGK26642.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-218]
          Length = 406

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 235/372 (63%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I
Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSVAIHGNKSQGARTRALADFKSGDI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++ HV N ++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K 
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNHELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKL++K++
Sbjct: 357 LRDIEKLLKKEI 368


>gi|55823472|ref|YP_141913.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
 gi|55739457|gb|AAV63098.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 528

 Score =  303 bits (775), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 156/371 (42%), Positives = 233/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  +  AV+ AG+ +P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +K R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L 
Sbjct: 61  ---DKIRTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +NNIE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T   ++  F+    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R++I+ +FK G I ++V
Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLGII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|34498347|ref|NP_902562.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
 gi|34104201|gb|AAQ60560.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 439

 Score =  303 bits (775), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 157/383 (40%), Positives = 240/383 (62%), Gaps = 8/383 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLG++P ++ A+  AGY  PT +Q + +P  +   D+   AQTG+GKTA+F+LP L
Sbjct: 1   MTFSDLGIAPTILRALQAAGYENPTAVQAEAVPAAIAGRDLLVSAQTGSGKTAAFLLPAL 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
           T L E+  A+ + PR L+L PTRELA QV  N  +YGK+   +  A L+GG  F  Q + 
Sbjct: 61  TKLSERSTAKGQGPRVLVLTPTRELAQQVEKNALEYGKDLRWMRTACLVGGSSFGYQIRA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R  D+++ TPGR++DH   G++  + +E+LV+DEADRMLDMGFI  I+ I    P TR
Sbjct: 121 LSRPIDLIVATPGRLMDHMRSGRIDFSRLEMLVLDEADRMLDMGFIDDIEAIVKATPETR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQQ 237
           QT+LFSAT+   + +++E   ++P+RIE+    ++  TIE   +  YA   + K  LL  
Sbjct: 181 QTVLFSATLDGIVGRMAEKMTRDPQRIEIARTETSGGTIEEHLL--YADDLNHKHRLLDY 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+ +      +IF   K     L   L  QG+S   +HG++ Q  R + L++ + G I+
Sbjct: 239 ILK-ESGFDQCVIFSATKAYSEELADKLSDQGYSAACLHGDMPQSWRNRTLNDLRRGRIK 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+P + HV NFD+P +AE+Y+HRIGRTGRAGR G A TL   ++   +
Sbjct: 298 VLVATDVAARGIDVPTITHVVNFDLPKQAEDYVHRIGRTGRAGRDGTAITLAESKEFHKV 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNP 380
             IE+ +++++    G +  L P
Sbjct: 358 RRIEQYLKRQI--TEGVIDGLEP 378


>gi|304408600|ref|ZP_07390221.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307305428|ref|ZP_07585176.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304352421|gb|EFM16818.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306911731|gb|EFN42156.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 467

 Score =  303 bits (775), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 155/366 (42%), Positives = 232/366 (63%), Gaps = 4/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ A+ + GY +PTPIQ K IP++L+  ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSQLGLSDPILRAITELGYSQPTPIQEKAIPVILKGKNLLAGAQTGTGKTASFVLPIL 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +  +  + R +  R LIL PTRELA QV DN  KY K   LT   + GG+    Q ++L
Sbjct: 61  QMFADMPKIRAKRVRALILTPTRELAVQVEDNIAKYAKYLPLTSMAMYGGVDAAPQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + I +LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDEISVLVLDEADRMLDMGFIEDINKIIERLPTERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++ +++  ++NP  IE+   S+ A  I+   +       KK ALL +L+
Sbjct: 181 NLLFSATLSKQVRFLAKTAVENPVEIEIARDSANAPQIDQWLITV--DKDKKSALLSKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  +IF   K+    L   LEK+G +  AIH    Q  R ++L +FK G ++ +
Sbjct: 239 TEQ-AWEQALIFIQTKQGAAKLVSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGKLRFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +A+RG+DI  +  V N+D+P+ A++YIHRIGRTGRAG  G+A + V+K+D +++ A
Sbjct: 298 VATGVASRGIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGACGEAISFVSKDDFRNLCA 357

Query: 360 IEKLIE 365
           IE+ ++
Sbjct: 358 IERRLD 363


>gi|313112968|ref|ZP_07798612.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624733|gb|EFQ08044.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 638

 Score =  303 bits (775), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 157/375 (41%), Positives = 231/375 (61%), Gaps = 4/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ AV +AGY  P+PIQ   IP VL   D+ G AQTGTGKTA+F LPML
Sbjct: 1   MTFKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLSGRDLMGCAQTGTGKTAAFALPML 60

Query: 61  TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L     R +   R LIL PTRELA Q+ ++F+ YGK   L   ++ GG+    Q + L
Sbjct: 61  DRLTANAPRRKGAIRALILTPTRELALQIGESFDAYGKYLKLRSTVIFGGVGQAPQVEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G D+LI  PGR+ D   +G + ++N+EI V+DEADRMLDMGF+  ++ + + +P  RQ
Sbjct: 121 KKGVDILIACPGRLNDLIGQGFIDLSNLEIFVLDEADRMLDMGFVHDVKKVIAKLPGERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  E+++++   L+ P  ++V+  SST + I+      + +   K  LL  L+
Sbjct: 181 NLMFSATMPTEIEQLAAGILRKPAFVKVDPVSSTVDRIQQSLY--HVEKGNKKFLLPWLI 238

Query: 240 QS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ Q  + N ++F   K     +   L KQG    AIHGN  Q +R+  L NFK G  ++
Sbjct: 239 KNLQPPVVNALVFSRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALENFKAGKTKV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI ++ HVFN+D+P   E Y+HRIGRT RAG  G A +  A E+ +++ 
Sbjct: 299 LVATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEQEYLA 358

Query: 359 AIEKLIEKKVDWLNG 373
            IEKL   K+  ++G
Sbjct: 359 GIEKLNRGKIPVVSG 373


>gi|159045255|ref|YP_001534049.1| putative ATP-dependent RNA helicase [Dinoroseobacter shibae DFL 12]
 gi|157913015|gb|ABV94448.1| putative ATP-dependent RNA helicase [Dinoroseobacter shibae DFL 12]
          Length = 434

 Score =  303 bits (775), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 154/361 (42%), Positives = 225/361 (62%), Gaps = 5/361 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LGLSP++V  +       PTPIQ + IP  L   DV GIAQTGTGKTA+F LP+L  L K
Sbjct: 2   LGLSPRLVAGLAAQNITDPTPIQTRAIPHGLNGRDVLGIAQTGTGKTAAFGLPLLDALMK 61

Query: 66  G--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
              +   R  R LIL PTREL +Q+ ++   + +  +L + +++GG+    Q K+ ERGA
Sbjct: 62  AGTKPAPRTCRGLILAPTRELVSQICESLRAFTEGSHLKLQVIVGGVAIGPQIKRAERGA 121

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
           D+++ TPGR++D  +R  L ++    LV+DEAD+MLD+GFI  ++ I  L+P  RQT+LF
Sbjct: 122 DLIVATPGRLIDLLDRKALRLSETRFLVLDEADQMLDLGFIHALRKIAPLLPAERQTMLF 181

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM  +++++S  +L +P R+EV  P   A+ I    V    Q +K   L+  L   +D
Sbjct: 182 SATMPKQMEELSRAYLTDPARVEVAPPGKIADKITQS-VHFVEQGAKTQLLIDLLGNHRD 240

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
            +   ++F   K     L   L   GF   AIHGN  Q  R + L  F+EGT++++VA+D
Sbjct: 241 EL--ALVFSRTKHGADRLARKLSNAGFETAAIHGNRSQGQRERALKAFREGTLKVLVATD 298

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARG+DIPDV  V+NFD+PN  EN++HRIGRT RAGR G+A    A E++  + A++K+
Sbjct: 299 VAARGIDIPDVRFVYNFDLPNVPENFVHRIGRTARAGRDGQAVAFCAPEEMGELRAVQKV 358

Query: 364 I 364
           +
Sbjct: 359 M 359


>gi|89069624|ref|ZP_01156963.1| putative ATP-dependent RNA helicase protein [Oceanicola granulosus
           HTCC2516]
 gi|89044822|gb|EAR50922.1| putative ATP-dependent RNA helicase protein [Oceanicola granulosus
           HTCC2516]
          Length = 406

 Score =  303 bits (775), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 156/379 (41%), Positives = 231/379 (60%), Gaps = 12/379 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLSP++   + + G   PTPIQ + IP  L+  DV G+AQTGTGKTA+F LP++
Sbjct: 1   MTFENLGLSPRLAARLAEQGLTAPTPIQTQAIPHALEGRDVLGLAQTGTGKTAAFGLPLI 60

Query: 61  TILEKGRARVRMPRT---LILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQN 116
             L         P T   LIL PTRELAAQ+ D+   + G   +  + L++GG    AQ 
Sbjct: 61  QALTAAGTHA-APNTVLALILAPTRELAAQIVDSLRAFAGNGGSPRIGLVVGGKSINAQA 119

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L RG D+L+ TPGR++D  +R  L +     LV+DEAD+MLD+GFI  ++ I  L+P 
Sbjct: 120 NALRRGTDILVATPGRLIDLLDRKALTLGKARYLVLDEADQMLDLGFIHALRRIAPLLPK 179

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCAL 234
            RQT+LFSATM  ++ +++  +L +P R++V+ P   A+ ++    FVA  A    K AL
Sbjct: 180 ERQTMLFSATMPKQMSEIAGAYLTDPVRVQVSPPGKPADKVDQSVHFVAKDA----KQAL 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  LL +    +  ++F   K     L   L++ GF+  +IHGN  Q  R + L  F+EG
Sbjct: 236 LIDLLDAHRD-ERALVFARTKHGAERLMKQLDRAGFAASSIHGNKSQGQRNRALDGFREG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            ++++VA+D+AARG+DIP VG+V+N+++PN  ENY+HRIGRT RAG  G+A     +E++
Sbjct: 295 KVRVLVATDVAARGIDIPGVGYVYNYELPNVPENYVHRIGRTARAGADGRAVAFCGEEEM 354

Query: 355 KHIDAIEKLIEKKVDWLNG 373
             +  IEK++ K +    G
Sbjct: 355 GELRDIEKVLGKPIAIAGG 373


>gi|271500987|ref|YP_003334012.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270344542|gb|ACZ77307.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
          Length = 452

 Score =  302 bits (774), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 163/377 (43%), Positives = 235/377 (62%), Gaps = 18/377 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY +PTP+Q + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFQSLGLSADILRAVEEQGYREPTPVQSQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  ------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                  +L KGR  VR    LIL PTRELAAQ+ +N + Y K   L   ++ GG+    
Sbjct: 61  QLLNESPVLAKGRRPVR---ALILTPTRELAAQIGENVQAYSKYLRLRSLVVFGGVSINP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G D+LI TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +
Sbjct: 118 QMMKLRGGVDILIATPGRLLDLEHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLAKL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKK 231
           P  RQ LLFSAT +DE+++++   L NP  +EV   NTPS       H     +    +K
Sbjct: 178 PPKRQNLLFSATFSDEIKELAGKLLTNPASVEVVRRNTPSELVTQHVH-----FVDKKRK 232

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL  L+  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L+NF
Sbjct: 233 RELLSHLI-GKHNWQQVLVFTRTKHGANHLAELLNKDGITAAAIHGNKSQGARTRALANF 291

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K+G I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  
Sbjct: 292 KDGDIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCV 351

Query: 352 EDIKHIDAIEKLIEKKV 368
           ++ K +  IE+L+++++
Sbjct: 352 DEHKLLRDIERLLKREI 368


>gi|217973506|ref|YP_002358257.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217498641|gb|ACK46834.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 467

 Score =  302 bits (774), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 174/461 (37%), Positives = 269/461 (58%), Gaps = 26/461 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ A+ + GY +PTPIQ K IP++L+  ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSDPILRAITELGYSQPTPIQEKAIPVILKGKNLLAGAQTGTGKTASFVLPIL 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +  +  + R +  R LIL PTRELA QV DN  KY K   LT   + GG+    Q ++L
Sbjct: 61  QMFADMPKIRAKRVRALILTPTRELAVQVEDNIAKYAKYLPLTSMAMYGGVDAAPQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + I +LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDEISVLVLDEADRMLDMGFIEDINKIIERLPTERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++ +++  ++NP  IE+   S+ A  I+   +       KK ALL +L+
Sbjct: 181 NLLFSATLSKQVRFLAKTAVENPVEIEIARDSANAPQIDQWLITV--DKDKKSALLSKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  +IF   K+    L   LEK+G +  AIH    Q  R ++L +FK G ++ +
Sbjct: 239 TEQ-AWEQALIFIQTKQGAAKLVSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGKLRFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +A+RG+DI  +  V N+D+P+ A++YIHRIGRTGRAG  G+A + V+K+D +++ A
Sbjct: 298 VATGVASRGIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGACGEAISFVSKDDFRNLCA 357

Query: 360 IEK-----LIEKKVDWLNGDLSSLNPPLEKIDIAQHN-----------HARKNNPIPQKS 403
           IE+     ++ K+++   G + +   P+  +D    N            AR + P  + S
Sbjct: 358 IERRLGHIIVRKEIE---GFVPNKEVPVSILDFVPKNTTPKTFKARAPEARTSRPAKEGS 414

Query: 404 TGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLG 444
                 KK+ S+ KS    K +  +++ Q    EN +++ G
Sbjct: 415 FETAHAKKHRSA-KSKPEAKAA--VARPQSAQTENSSEATG 452


>gi|254251488|ref|ZP_04944806.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
 gi|124894097|gb|EAY67977.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
          Length = 480

 Score =  302 bits (774), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 232/372 (62%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 4   MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 63

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 64  QRLHTFYAEHRNAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 123

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 124 DALKRGVDIVVATPGRLLDHMQQKTIDLSSLDILVLDEADRMLDMGFIHDIKRVLAKLPP 183

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAET+            +K  LL 
Sbjct: 184 RRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPV--DRDRKRELLT 241

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 242 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALTEFKNSTL 300

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 301 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 360

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 361 LRDIERLIKREI 372


>gi|148977043|ref|ZP_01813689.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3]
 gi|145963703|gb|EDK28964.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3]
          Length = 428

 Score =  302 bits (774), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 168/419 (40%), Positives = 252/419 (60%), Gaps = 13/419 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P++V A+ + GY K TPIQ K IP+  + HD+   AQTGTGKTA+F LP++
Sbjct: 1   MSFSSQGFAPELVKALTECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPVI 60

Query: 61  T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +L  G+   R   R LIL PTRELAAQ+A N + Y K   L+V+ + GG    +Q ++
Sbjct: 61  QHLLNSGKKASRGTARGLILAPTRELAAQIAQNIKDYVKYTELSVSAVYGGNKMSSQVRQ 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H   G + + N+E LV DEADR+LDMGFI  ++ I   V  + 
Sbjct: 121 LELGVDILVATPGRLEEHLEAGNVSIANLEFLVFDEADRILDMGFINAVRKIMLDVETSP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L ++S + L+ PKRI V   +STA T+ H  V       +K  LL +L
Sbjct: 181 QIMMFSATTSTQLNQLSVDILRKPKRISVERENSTAATVGH--VVYPVDQERKTELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F N K+    +   L+  G      HG+  Q +R + L +FKEG  ++
Sbjct: 239 I-GRKNWRQVLVFVNYKETANEVVKELKLDGIKAVLCHGDKAQSARRRALDDFKEGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V +E+   + 
Sbjct: 298 MVATDVAARGLDIEDLPHVINYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVV 357

Query: 359 AIEKLIE---KKVDWLNGDLSSLNPPLEKIDIA---QHNHARKNNP--IPQKSTGFDRR 409
            +EKLI+   ++V+    +    +  +EK++     ++   RKNN    PQ     +RR
Sbjct: 358 QVEKLIQQRIRRVEQPGYEPKKRDAYIEKLNTKAAYKNRQGRKNNANDAPQDQASAERR 416


>gi|261418549|ref|YP_003252231.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC61]
 gi|297528577|ref|YP_003669852.1| DEAD/DEAH box helicase [Geobacillus sp. C56-T3]
 gi|319765363|ref|YP_004130864.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC52]
 gi|261375006|gb|ACX77749.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC61]
 gi|297251829|gb|ADI25275.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. C56-T3]
 gi|317110229|gb|ADU92721.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC52]
          Length = 467

 Score =  302 bits (774), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 159/370 (42%), Positives = 234/370 (63%), Gaps = 6/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS +V+ A+   G+ + TPIQ KTIPL LQ  DV G AQTGTGKTA+F +P   I
Sbjct: 4   FQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIP---I 60

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +EK   +    + L++ PTRELA QV++   K G    + V  + GG   E Q + L++ 
Sbjct: 61  VEKVDVKNGAIQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGRI+DH NRG L + ++  +V+DEAD ML+MGFI  I+ I S VP  RQTLL
Sbjct: 121 PHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+  P+ ++V     T   I+  ++  + +  KK  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEK--KKFDILTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+F   K+ V  L  +L  +G++   IHG++ Q  R+ +L  FKEG I+++VA+
Sbjct: 239 -APELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   +I  +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIER 357

Query: 363 LIEKKVDWLN 372
             ++K++ + 
Sbjct: 358 TTKRKMERMK 367


>gi|329926082|ref|ZP_08280693.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5]
 gi|328939480|gb|EGG35833.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5]
          Length = 506

 Score =  302 bits (774), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 155/371 (41%), Positives = 230/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL +SP ++ A+    Y  PTPIQ + IP VL   D+ G AQTGTGKTA+F +PM+
Sbjct: 1   MTFEDLNISPVILKALAKENYKAPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMI 60

Query: 61  TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L +   +  M R    L+L PTRELA Q++DN + Y +   L    ++GG+  + Q +
Sbjct: 61  QLLNQQPPKPGMGRRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQER 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++GAD+LI TPGR+LD  N+  + + ++EILV+DEADRMLDMGFI  ++ I + +P  
Sbjct: 121 ALQQGADILIATPGRLLDLMNQKHVDLQHVEILVLDEADRMLDMGFIHDVKRIIAKMPSK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTL FSATM  E+ ++ +  L NP ++E+   SSTAE IE        +   K   L +
Sbjct: 181 KQTLFFSATMPAEITQLVQTLLHNPVKVEITPVSSTAERIEQSVY--LLETGNKQQQLNE 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++   ++ + ++F   K+    +   L K   +  AIHG+  Q SR   L+NFK G  +
Sbjct: 239 LMKD-SSIVSALVFTRTKRGADRVARGLNKVNITAQAIHGDKSQTSRQTALNNFKSGATR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++ HV NF++PN  E Y+HRIGRTGRAG  G A +    +++  +
Sbjct: 298 VLVATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAISFCEVDEVPFL 357

Query: 358 DAIEKLIEKKV 368
             IEKLI K +
Sbjct: 358 RDIEKLIGKSI 368


>gi|313900312|ref|ZP_07833806.1| ATP-dependent RNA helicase RhlE [Clostridium sp. HGF2]
 gi|312954861|gb|EFR36535.1| ATP-dependent RNA helicase RhlE [Clostridium sp. HGF2]
          Length = 437

 Score =  302 bits (774), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 165/420 (39%), Positives = 248/420 (59%), Gaps = 10/420 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L ++  ++ AV + GYV PTPIQ + IP  LQ  D+ G AQTGTGKTA+F +P +
Sbjct: 1   MKFQTLHITEPILKAVKEQGYVDPTPIQEQAIPYALQGRDILGCAQTGTGKTAAFSIPTI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+K   +    R+LI+ PTRELA Q+ +N   Y +   +  A++ GG+P + Q + L+
Sbjct: 61  QLLKKHYKQ--SIRSLIVTPTRELAIQIQENITAYAQYTTIRSAVIFGGVPQKPQERILK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGR+ D   +G + +++IEI ++DEADRMLDMGF+P ++ I + +P  +QT
Sbjct: 119 AGVDILVATPGRLNDLIQQGIIDISHIEIFILDEADRMLDMGFLPDVKRIIAKLPKRKQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++++ L  P  IEV   S+T E I+      Y         L   L 
Sbjct: 179 LFFSATMPSEIRKLAQSLLHEPVSIEVTPASTTVEKIDQSL---YYVDKANKKRLLLKLL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++ ++N ++F   K N   L   L + G +   IHGN  Q +R + L  FKEG  +++V
Sbjct: 236 QKNRVQNALVFTRTKSNANRLAKYLNENGVTSGVIHGNKSQNARQQALLQFKEGKSRVLV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HVFNFD+PN AE Y+HRIGRTGRAGR G A       + +++  I
Sbjct: 296 ATDIAARGIDVQELSHVFNFDIPNEAEVYVHRIGRTGRAGRQGCAIAFSDCNEAEYVKNI 355

Query: 361 EKLIEKKVDWL-NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           EKLI   +  + + +    N  LE    AQ  + R+  P  + S     R +N S+   H
Sbjct: 356 EKLIRMHIPVVEDREFPMRN--LEPAASAQSQNRRRQKPAAKPSAS--NRSENRSAAVKH 411


>gi|323137351|ref|ZP_08072429.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
 gi|322397338|gb|EFX99861.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
          Length = 450

 Score =  302 bits (774), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 158/373 (42%), Positives = 231/373 (61%), Gaps = 7/373 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGL+  ++ A+   GY  PT IQ + IP +++  D+ GIAQTGTGKTA+F LP+L  
Sbjct: 4   FSDLGLAEILLRALDREGYETPTSIQAQAIPYLMEGRDLLGIAQTGTGKTAAFALPILNR 63

Query: 63  LEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L   R R      RTL+L PTRELAAQ+AD+F  YG+    +V +++GG+    Q   L 
Sbjct: 64  LAADRRRPAPFTARTLVLAPTRELAAQIADSFRAYGQFMRPSVGVIVGGVSHRPQIDMLA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVL+ TPGR+LDH   GKL +   E+LV+DEAD MLD+GFI  I+ I + +P  RQT
Sbjct: 124 RGLDVLVATPGRLLDHIASGKLKLAATEVLVLDEADHMLDLGFIVPIRQIVAKLPKKRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLL 239
           LLFSATM  E+  ++E+ LQNP ++ V   ++TAE + +H F+        K  +L +L+
Sbjct: 184 LLFSATMPKEIAGLAEDMLQNPAQVSVTPVATTAERVAQHVFL---VDGGAKRDMLIELM 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D +   I+F   K+    +   L+  G    AIHGN  Q  R++ L  F++G  +++
Sbjct: 241 NDAD-VSRAIVFTRTKRGADRVAEHLDAAGVGAEAIHGNKSQSQRIRALDAFRKGRTRVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV N+++P   E Y+HRIGRT RAG  G+A +L    + + +  
Sbjct: 300 VATDIAARGIDVDGVTHVVNYELPETPEAYVHRIGRTARAGASGRAISLCDNGERQLLRQ 359

Query: 360 IEKLIEKKVDWLN 372
           IEKL  + + + +
Sbjct: 360 IEKLTRQTLAFTD 372


>gi|310767076|gb|ADP12026.1| ATP-dependent RNA helicase RhlE [Erwinia sp. Ejp617]
          Length = 469

 Score =  302 bits (774), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 160/375 (42%), Positives = 239/375 (63%), Gaps = 14/375 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L       KGR   R  R LIL PTRELAAQV +N + Y K  ++   ++ GG+    
Sbjct: 61  QLLSSHNPHPKGR---RPVRALILTPTRELAAQVGENVQDYSKYLDMRSLVVFGGVSINP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G DVL+ TPGR+LD  ++  L ++ +EILV+DEADRMLDMGFI  I+ + + +
Sbjct: 118 QMMKLRGGVDVLVATPGRLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCA 233
           P  RQ LLFSAT +DE++ ++E  L NP+++EV   ++ +E + +H  +       K+  
Sbjct: 178 PAKRQNLLFSATFSDEIKILAEKLLHNPEQVEVARRNTASEQVTQHVHLVD----KKRKR 233

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L  LL  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + LS+FK+
Sbjct: 234 ELLSLLIGRGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKD 293

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I+++VA+D+AARG+DI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++
Sbjct: 294 GKIRVLVATDIAARGIDIEELPHVVNYELPNVPEDYVHRIGRTGRAAAVGEALSLVCVDE 353

Query: 354 IKHIDAIEKLIEKKV 368
            K +  IE+++++++
Sbjct: 354 HKLLRDIERVLKREI 368


>gi|251790108|ref|YP_003004829.1| DEAD/DEAH box helicase domain-containing protein [Dickeya zeae
           Ech1591]
 gi|247538729|gb|ACT07350.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
          Length = 455

 Score =  302 bits (774), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 163/377 (43%), Positives = 234/377 (62%), Gaps = 18/377 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY +PTP+Q + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFESLGLSADILRAVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                  +L KGR  VR    LIL PTRELAAQ+ +N   Y K   L   ++ GG+    
Sbjct: 61  QLLNERPVLAKGRRPVR---ALILTPTRELAAQIGENVLAYSKYLRLRSLVVFGGVSINP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G D+LI TPGR+LD  ++  + ++ ++ILV+DEADRMLDMGFI  I+ + + +
Sbjct: 118 QMMKLRGGVDILIATPGRLLDLEHQNAVDLSQVDILVLDEADRMLDMGFIHDIRRVLAKL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKK 231
           P  RQ LLFSAT +DE+++++   L NP  +EV   NTPS       H     +    +K
Sbjct: 178 PPKRQNLLFSATFSDEIKELAGKLLTNPASVEVVRRNTPSELVTQHVH-----FVDKKRK 232

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL  L+   D  +  ++F   K    +L   L K G +  AIHGN  Q +R + L+NF
Sbjct: 233 RELLSHLIGKHD-WRQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALANF 291

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K+G I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  
Sbjct: 292 KDGDIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCV 351

Query: 352 EDIKHIDAIEKLIEKKV 368
           ++ K +  IE+L+++++
Sbjct: 352 DEHKLLRDIERLLKREI 368


>gi|322516252|ref|ZP_08069184.1| ATP-dependent RNA helicase DeaD [Streptococcus vestibularis ATCC
           49124]
 gi|322125316|gb|EFX96681.1| ATP-dependent RNA helicase DeaD [Streptococcus vestibularis ATCC
           49124]
          Length = 528

 Score =  302 bits (774), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 156/371 (42%), Positives = 232/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  +  AV+ AG+ KP+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +K R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L 
Sbjct: 61  ---DKIRTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +NNIE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T   ++  F+    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMGYLSII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|269139672|ref|YP_003296373.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|267985333|gb|ACY85162.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|304559541|gb|ADM42205.1| ATP-dependent RNA helicase RhlE [Edwardsiella tarda FL6-60]
          Length = 440

 Score =  302 bits (774), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 161/373 (43%), Positives = 239/373 (64%), Gaps = 10/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL  +++ AV + GY  PTPIQ + IPLVLQR D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLCAELLRAVEEQGYRDPTPIQQQAIPLVLQRRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +L +    G+ R R  R LIL PTRELAAQ+ +N  +Y ++  L   ++ GG+    Q 
Sbjct: 61  QLLHQNPKNGKGR-RPVRALILTPTRELAAQIGENVREYSRHLPLRSLVVFGGVSINPQM 119

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 120 MKLRGGVDVLVATPGRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPA 179

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
            RQ LLFSAT +DE++ ++ + L NP  +EV   ++ +E + +H  +       +K  LL
Sbjct: 180 KRQNLLFSATFSDEIKALAASLLHNPAEVEVARRNTASELVTQHVHL---VDKKRKRELL 236

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ ++D  +  ++F   K    +L   L K G S  AIHGN  Q +R + L++FK G 
Sbjct: 237 SFLIGTRD-WRQVLVFTRTKYGANHLAEQLNKDGISAAAIHGNKSQGARTRALADFKSGD 295

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+AARGLDI  + +V N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K
Sbjct: 296 IRVLVATDIAARGLDIDQLPYVVNYELPNVPEDYVHRIGRTGRAQATGEALSLVCVDEHK 355

Query: 356 HIDAIEKLIEKKV 368
            +  IE+L+++ +
Sbjct: 356 LLRDIERLLKRPI 368


>gi|222055835|ref|YP_002538197.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32]
 gi|221565124|gb|ACM21096.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32]
          Length = 446

 Score =  302 bits (774), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 164/439 (37%), Positives = 257/439 (58%), Gaps = 28/439 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL  +++ A+   GY  PTPIQ + IP++ +  D+   AQTGTGKTA+F LP++
Sbjct: 1   MSFDSLGLRVELLTAIASQGYTMPTPIQTQAIPVIFEGCDLLAGAQTGTGKTAAFALPIV 60

Query: 61  TILEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L +     + R PR L+L PTRELAAQV++    Y +  +L   ++ GG+  +AQ ++
Sbjct: 61  QMLGENIPPEKRRRPRALVLVPTRELAAQVSEQMNNYARRLSLRSTMIYGGVNIQAQIER 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+++ TPGR+LDH  RG + ++ I+ LV+DEADRMLD+GFI  IQ +   +P  R
Sbjct: 121 LHRGVDIVVATPGRLLDHAERGTVNLSRIKFLVLDEADRMLDLGFIDAIQKVAEYLPVKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +  ++++++  L  P+RIEV   +  A+ +         + S+K  +L  L
Sbjct: 181 QTLLFSATYSQSIKQLADELLNKPRRIEVARSNIAADAVTQAIYQV--EKSRKREMLSFL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S+      ++F   +     L   L   G    AIH N  Q  R + L+ F+ G  ++
Sbjct: 239 I-SRGKWNQVLVFARTRYGADKLTEELLYDGIKAAAIHSNKSQSIRNRTLAEFRRGEFRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV N+D+P   E+Y+HRIGRTGRAG+ G A +LV+ E+   + 
Sbjct: 298 LVATDVAARGLDIEQLPHVVNYDLPQVPEDYVHRIGRTGRAGKEGIALSLVSHEEQPLLK 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKI-DIAQHNHAR------KNNPIPQKSTGFDRRKK 411
           AIEKL++  +            PL+ + +  Q+   R      K++  P K+    R+++
Sbjct: 358 AIEKLLKYAI------------PLQTLAEFPQYAVKRSGANKIKSDKGPSKA----RKRE 401

Query: 412 NYSSQKSHIPLKESEKISK 430
              ++++  P KES+  SK
Sbjct: 402 AIPAKQAKSPAKESKSPSK 420


>gi|119896607|ref|YP_931820.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
 gi|119669020|emb|CAL92933.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
          Length = 447

 Score =  302 bits (774), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 160/371 (43%), Positives = 230/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+ +++ AV  +GY  PTP+Q + IP  +   D+   + TG+GKTA+F LP L
Sbjct: 1   MTFHALGLAEELIAAVEQSGYTTPTPVQEQAIPAAIAGGDLLVSSHTGSGKTAAFTLPSL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
             L   R A    PR L+L PTRELA QV +  + YG+    L  A L+GG PF AQ K+
Sbjct: 61  HRLVGRRPAPNSGPRVLVLTPTRELAQQVEEAVKTYGRALRWLNTACLVGGAPFFAQVKQ 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R  DV++ TPGR+LDH NR KL ++++E LV+DEADRMLDMGF   I+ I   +P +R
Sbjct: 121 LSRPVDVVVATPGRLLDHLNRRKLKLSDVETLVLDEADRMLDMGFAEDIEAIVGAIPASR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQ 237
           QTLLFSAT+   +  ++    +NP+RIE+ +  +    IE   +  +A     K  LL+ 
Sbjct: 181 QTLLFSATLDGVVGALANKLTRNPQRIEIASTEAKRGNIEQRLM--FADDMGHKSRLLEA 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL + D ++  ++F   KK+   L  SL+++GFS  A+HG++ Q  R + L   ++G I 
Sbjct: 239 LLGT-DGLQQAVVFTATKKSADELSLSLQEKGFSAAALHGDMHQTVRNRTLQRLRQGRIG 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+  + HV NFD P + E+Y+HRIGRTGRAGR G A TL    +   I
Sbjct: 298 VLVATDVAARGIDVAGISHVINFDPPRQVEDYVHRIGRTGRAGRDGIAITLSGPRETGLI 357

Query: 358 DAIEKLIEKKV 368
            AIE+    ++
Sbjct: 358 RAIERFTGDRL 368


>gi|23011993|ref|ZP_00052190.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 551

 Score =  302 bits (773), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 152/381 (39%), Positives = 236/381 (61%), Gaps = 6/381 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D GL+  ++ A+ +AGYV PTPIQ + +P  ++  D+CGIAQTGTGKTA+F LP+L  
Sbjct: 42  FTDFGLAEPILRALGEAGYVSPTPIQTQALPPAMEGRDLCGIAQTGTGKTAAFALPILHR 101

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE  RA  R  R L+L PTRELA+Q+A++F  YG++   T  ++ GG+    Q + + 
Sbjct: 102 LSLENRRAPRRGCRVLVLSPTRELASQIAESFSDYGRHLPYTSTVVFGGVNISRQERAIA 161

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGR++D  +R  L +  +EILV+DEAD+MLD+GFI  ++ I  ++P  RQ+
Sbjct: 162 PGVDILVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPARRQS 221

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   +  +++ +L NP ++ V   ++TAE ++   +  +     K ALL  +L+
Sbjct: 222 LFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVI--FCHTGAKQALLNHVLR 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               ++  ++F   K     +   L+K G    AIHGN  Q  R + L+ F++G+ +++V
Sbjct: 280 D-PKIERVLVFTRTKHGADRVVRGLDKVGIVGAAIHGNKSQPQRERALAAFRDGSCRVLV 338

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV N+D+PN  E+Y+HRIGRT RAG  G+A +    E+  ++  I
Sbjct: 339 ATDIAARGIDVEGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRDI 398

Query: 361 EKLIEKKVDWLNGDLSSLNPP 381
           E+   +KV  + G      PP
Sbjct: 399 ERTTRQKVPVV-GFPEGFQPP 418


>gi|118579192|ref|YP_900442.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118501902|gb|ABK98384.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
           2379]
          Length = 447

 Score =  302 bits (773), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 164/406 (40%), Positives = 241/406 (59%), Gaps = 23/406 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF      P +   +  AGY  PTPIQ ++IP V+   DV G+AQTGTGKTA+F LP+L
Sbjct: 1   MDFQKFEFHPTIAAGISAAGYSTPTPIQKQSIPPVMAGSDVMGLAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +G+      R LI+ PTRELA Q+  +  + G    L    + GG+    Q ++L 
Sbjct: 61  HRLMEGKQGTV--RALIIAPTRELAEQINTSIAQLGAKTGLKSMTVYGGVSVNPQIERLR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+++  PGR+LDH N+G + ++ IE+LV+DEAD+M DMGF+P I+ +   +P  RQT
Sbjct: 119 RGVDIVVACPGRLLDHINQGTIDLSRIEVLVLDEADQMFDMGFLPDIRRVLKHLPAQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D++++++ + L+ P  ++  + ++   T+ H           K  LL +LL+
Sbjct: 179 LLFSATMPDDIRRLASDILRQPITVQAGS-TAPPVTVSHALYPVSQHL--KTPLLLELLR 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             DT ++ +IF   K     L   LEK G+   ++ GN+ Q  R   L  F++GT Q+MV
Sbjct: 236 HTDT-ESVLIFARTKHRAKRLGEQLEKAGYRATSLQGNLSQNRRQAALDGFRDGTFQIMV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+D+P+ AE YIHRIGRTGRA R G AFTLV  +D    +A+
Sbjct: 295 ATDIAARGIDVSQISHVVNYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTPDD----NAM 350

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
            + IEKK          LN  LE+  + Q ++   + P P K + F
Sbjct: 351 VRTIEKK----------LNAELERRTVDQFDY---SVPAPHKDSEF 383


>gi|145222813|ref|YP_001133491.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           gilvum PYR-GCK]
 gi|145215299|gb|ABP44703.1| ATP-dependent RNA helicase CsdA [Mycobacterium gilvum PYR-GCK]
          Length = 559

 Score =  302 bits (773), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 154/381 (40%), Positives = 236/381 (61%), Gaps = 12/381 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL + P V+ AV D GY  P+PIQ  TIP +L+  DV G+AQTGTGKTA+F +P+L
Sbjct: 13  LTFADLQIHPAVLKAVADVGYESPSPIQAATIPAILEGSDVVGLAQTGTGKTAAFAIPIL 72

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + ++      R  + L+L PTRELA QVA+ F +YG    + V  + GG  +  Q   L+
Sbjct: 73  SKIDTDS---RNTQALVLAPTRELALQVAEAFGRYGAQLRVNVLPIYGGSSYVPQLAGLK 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  +G L +++++ LV+DEAD ML MGF   ++ I +  P  +Q 
Sbjct: 130 RGAQVVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQV 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++K++  +L +P  + V + + TAE I   +      Y +K   L +LL+
Sbjct: 190 ALFSATMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYF--LVSYPRKMDALTRLLE 247

Query: 241 SQ--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++  D M   I+F   K+    +   L  +GF+  AI+G+I Q  R + ++  K+GTI +
Sbjct: 248 TEQGDAM---IVFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTIAQLKDGTIDI 304

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  + HV NFD+P+  E+Y+HRIGRTGRAGR G A   V   +   + 
Sbjct: 305 LVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLG 364

Query: 359 AIEKLIEKKVDWLNGDLSSLN 379
           AIE++  +K+  +  +L S++
Sbjct: 365 AIERVTRQKL--VESELPSVD 383


>gi|222086716|ref|YP_002545250.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
 gi|221724164|gb|ACM27320.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
          Length = 556

 Score =  302 bits (773), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 154/375 (41%), Positives = 234/375 (62%), Gaps = 4/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGLS ++V  +    +  PTPIQ + IPLVLQ  D+ G+AQTGTGKTA+F LP++ 
Sbjct: 19  DFHSLGLSKQIVDTLSQNNFATPTPIQAQAIPLVLQGRDLIGLAQTGTGKTAAFGLPIIE 78

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +L K   R   R  RTLIL PTREL  Q+ADN + + +   L + +++GG     Q  +L
Sbjct: 79  MLLKDAKRPDNRTVRTLILAPTRELVNQIADNLKLFVRKTALRINVVVGGASINKQQLQL 138

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+L+ TPGR+LD  +R  L +  +  LV+DEAD+MLD+GFI  ++ I+ +VP  RQ
Sbjct: 139 ERGTDILVATPGRLLDLISRRALSLGQVSYLVLDEADQMLDLGFIHDLRKISKMVPAKRQ 198

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   +  ++  +L NP ++EV+ P   A+ +E  +V   +  + K  +L++ +
Sbjct: 199 TMLFSATMPKTIADLAAEYLTNPVKVEVSPPGKAADKVEQ-YVHFVSGQNHKTEILKESI 257

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S +     ++F   K     L   LE  GF+  +IHGN  Q  R + L  F++G ++++
Sbjct: 258 -SANPDGRAMVFLRTKHGAEKLMKHLEHVGFAAASIHGNKSQGQRERALKGFRDGEVRVL 316

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V HV+N+D+P   + Y+HRIGRT RAGR G A    A ++ + +  
Sbjct: 317 VATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEARLLRD 376

Query: 360 IEKLIEKKVDWLNGD 374
           IE+L+  ++   +G+
Sbjct: 377 IERLMGIEIAVASGE 391


>gi|320323321|gb|EFW79409.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327518|gb|EFW83530.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330876701|gb|EGH10850.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 559

 Score =  302 bits (773), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 151/367 (41%), Positives = 234/367 (63%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPSK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++PK +++ T + T   IE   +  +A   +K + +  LL+ 
Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 243 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKV 368
           ++  +KV
Sbjct: 362 RVTGQKV 368


>gi|209809226|ref|YP_002264764.1| putative ATP-dependent RNA helicase 1 [Aliivibrio salmonicida
           LFI1238]
 gi|208010788|emb|CAQ81183.1| putative ATP-dependent RNA helicase 1 [Aliivibrio salmonicida
           LFI1238]
          Length = 418

 Score =  302 bits (773), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 167/416 (40%), Positives = 251/416 (60%), Gaps = 20/416 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+ ++V  V + G+ + TP+Q + IPLVL+ HDV   AQTGTGKTA+F LP++
Sbjct: 1   MSFASLGLTTELVNIVSELGFTEATPVQQQAIPLVLKGHDVLAGAQTGTGKTAAFGLPLI 60

Query: 61  T-ILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             ++E    R+   ++ RTLIL PTRELA QV D+   Y KN +L   +  GG   + Q 
Sbjct: 61  QRLIESPSPRIANSKVIRTLILTPTRELAQQVFDSLVTYTKNTDLKCVVAYGGTSVKIQT 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  GAD+L+ TPGR+LDH +   + +N  E LV+DEADRMLDMGF+P IQ I   +  
Sbjct: 121 ENLIGGADILVATPGRLLDHLHLNNITLNQAEYLVLDEADRMLDMGFMPDIQRILRKMAS 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             QTL FSAT  D++++++   L NPK ++V   +STA+T+E           +K  LL 
Sbjct: 181 KHQTLFFSATFGDKIKEIAYRILDNPKVVQVTPSNSTADTVEQMVYP--VDKHRKSELLA 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L+ S++  K  ++F   K+   +L   L+  G    +I+G+  Q +R++ L  FK G I
Sbjct: 239 YLIGSRN-WKQVLVFTKTKQGSDDLVKELKLDGIKAASINGDKSQGARIRALEEFKTGKI 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V N+++P +AE+Y+HRIGRTGRAG  GKA +L++ ++   
Sbjct: 298 RALIATDVAARGLDIEQLECVINYELPFKAEDYVHRIGRTGRAGHTGKAVSLMSADEDYL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           + AIE L++ ++  +WL G     N P            ++N P   +    D+RK
Sbjct: 358 LKAIETLLDTRLPQEWLKGYEPDPNAP-----------KKENQPRQSRGRSSDKRK 402


>gi|71906517|ref|YP_284104.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71846138|gb|AAZ45634.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 425

 Score =  302 bits (773), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 162/389 (41%), Positives = 241/389 (61%), Gaps = 11/389 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL  +++ AV D GY  PTPIQ + IP V+   D+   AQTGTGKTA F LP+L
Sbjct: 1   MHFSDLGLKAELLRAVADQGYDTPTPIQQQAIPAVMTGRDLMATAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGR----ARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L  G      RV + PR L+L PTRELA QV ++   YGK+  +T   + GG+    Q
Sbjct: 61  HRLCSGPNDRLTRVAKTPRVLVLTPTRELAIQVEESVRTYGKHLPITSLAVFGGVGINPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG D+L+ TPGR+LDH  +  + ++ IEI V+DEADRMLDMGFI  I+ I +L+P
Sbjct: 121 IANLRRGVDILVATPGRLLDHVQQRTVDLSKIEIFVLDEADRMLDMGFIRDIRKIIALLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ L+FSAT + ++++++   L NP  ++V   ++ AET+    + T     +K  LL
Sbjct: 181 KQRQNLMFSATFSPDIRELAAGLLHNPASVDVAARNTAAETVTQRVIET--NRDQKKELL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L +++      ++F   K     L  +LEK G    AIHG+  Q +R + L+ FKEG 
Sbjct: 239 CHLFETRG-WHQVLVFARTKHGADALSKTLEKAGIKSAAIHGDKSQGARTRALTEFKEGK 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +  +VA+D+AARG+DI  + +V N+++PN AE+Y+HRIGRTGRAG  G+A +LV+ ++  
Sbjct: 298 LVALVATDIAARGIDIDALPYVINYELPNVAEDYVHRIGRTGRAGMEGEAISLVSHDERG 357

Query: 356 HIDAIEKLIEKKVDWL---NGDLSSLNPP 381
            +  IE+LI++ ++ +     + S++ PP
Sbjct: 358 SLRDIERLIKRDLERVVIPGFEPSAIAPP 386


>gi|66046848|ref|YP_236689.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|302187695|ref|ZP_07264368.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Pseudomonas syringae pv. syringae 642]
 gi|63257555|gb|AAY38651.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330972316|gb|EGH72382.1| helicase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 557

 Score =  302 bits (773), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 151/367 (41%), Positives = 234/367 (63%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPSK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++PK +++ T + T   IE   +  +A   +K + +  LL+ 
Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 243 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKV 368
           ++  +KV
Sbjct: 362 RVTGQKV 368


>gi|332529812|ref|ZP_08405766.1| dead/deah box helicase domain protein [Hylemonella gracilis ATCC
           19624]
 gi|332040833|gb|EGI77205.1| dead/deah box helicase domain protein [Hylemonella gracilis ATCC
           19624]
          Length = 565

 Score =  302 bits (773), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 155/373 (41%), Positives = 242/373 (64%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +L L+P ++ AV + GY  PT IQ + IPL+LQ +D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MNFEELKLAPAILKAVREQGYETPTAIQEQAIPLILQGNDLLGGAQTGTGKTAAFTLPLL 60

Query: 61  TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L   R+          R L+L PTRELAAQV ++   YGK   L   ++ GG+    Q
Sbjct: 61  HNLTMRRSAQNKWGGNGIRALVLTPTRELAAQVEESVRNYGKYLQLESTVIFGGVGMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             ++++G D+L+ TPGR+LD   +G + ++ +++LV+DEADRMLDMGFI  ++ + +L+P
Sbjct: 121 IARVKKGVDILVATPGRLLDLQQQGFMDLSQVQMLVLDEADRMLDMGFIHDVKKVLALLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE++ ++E  L+NP+ ++V   ++T + I    V T  + SKK ALL
Sbjct: 181 KDKQSLLFSATFSDEIRALAEGLLKNPQSVQVTPRNTTVQRITQS-VHTVGR-SKKKALL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             ++ +QD     ++F   K    ++   L K G +  A+HGN  Q +R + L+ FK G 
Sbjct: 239 AHIINAQD-WSQVLVFTRTKFGANHVAEYLNKNGVTAMALHGNKSQGARTQALAGFKSGE 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ +VA+D+AARG+DI ++ HV N+++PN  E+Y+HRIGRTGRAGR G+A  LV  ++  
Sbjct: 298 IRALVATDIAARGIDIDELPHVVNYEIPNIPEDYVHRIGRTGRAGREGQAVNLVCLDEQG 357

Query: 356 HIDAIEKLIEKKV 368
            +  IE+  ++++
Sbjct: 358 FMAEIERFTKQQI 370


>gi|257482687|ref|ZP_05636728.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289626949|ref|ZP_06459903.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649408|ref|ZP_06480751.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330866127|gb|EGH00836.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330889311|gb|EGH21972.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330986634|gb|EGH84737.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 559

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 151/367 (41%), Positives = 234/367 (63%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPSK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++PK +++ T + T   IE   +  +A   +K + +  LL+ 
Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 243 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKV 368
           ++  +KV
Sbjct: 362 RVTGQKV 368


>gi|228477095|ref|ZP_04061733.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
           salivarius SK126]
 gi|228251114|gb|EEK10285.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
           salivarius SK126]
          Length = 528

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 156/371 (42%), Positives = 232/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  +  AV+ AG+ KP+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +K R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L 
Sbjct: 61  ---DKIRTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +NNIE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T   ++  F+    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMGYLGII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|315443280|ref|YP_004076159.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
 gi|315261583|gb|ADT98324.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
          Length = 561

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 152/370 (41%), Positives = 230/370 (62%), Gaps = 10/370 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL + P V+ AV D GY  P+PIQ  TIP +L+  DV G+AQTGTGKTA+F +P+L
Sbjct: 13  LTFADLQIHPAVLKAVADVGYESPSPIQAATIPAMLEGSDVVGLAQTGTGKTAAFAIPIL 72

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + ++      R  + L+L PTRELA QVA+ F +YG    + V  + GG  +  Q   L+
Sbjct: 73  SKID---TESRNTQALVLAPTRELALQVAEAFGRYGAQLRVNVLPIYGGSSYVPQLAGLK 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  +G L +++++ LV+DEAD ML MGF   ++ I +  P  +Q 
Sbjct: 130 RGAQVVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQV 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++K++  +L +P  + V + + TAE I   +      Y +K   L +LL+
Sbjct: 190 ALFSATMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYF--LVSYPRKMDALTRLLE 247

Query: 241 SQ--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++  D M   I+F   K+    +   L  +GF+  AI+G+I Q  R + ++  K+GTI +
Sbjct: 248 TEQGDAM---IVFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTITQLKDGTIDI 304

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  + HV NFD+P+  E+Y+HRIGRTGRAGR G A   V   +   + 
Sbjct: 305 LVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLG 364

Query: 359 AIEKLIEKKV 368
           AIE++  +K+
Sbjct: 365 AIERVTRQKL 374


>gi|309792203|ref|ZP_07686675.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
           DG6]
 gi|308225744|gb|EFO79500.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
           DG6]
          Length = 523

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 158/368 (42%), Positives = 226/368 (61%), Gaps = 11/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGLS  ++  + D GY +PTPIQ + IP++L   DV   AQTGTGKTA+F LP++  
Sbjct: 4   FSELGLSEPILRVLGDLGYDEPTPIQEQAIPVMLSNSDVIAQAQTGTGKTAAFALPIVQR 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   R    +P+ LIL PTRELA QVA+   KYGK   ++VA + GG P   Q + LE+G
Sbjct: 64  LRDER----VPQALILAPTRELAMQVAEAIYKYGKGRRISVAPVYGGQPIYRQLRALEQG 119

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGRI+DH  RG L+++ I  +V+DEAD MLDMGF   I+ I    P  RQT L
Sbjct: 120 VQVVVGTPGRIMDHMRRGTLVLDQISTVVLDEADEMLDMGFAEDIEFILQQTPQQRQTAL 179

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCF-VATYAQYSKKCALLQQLLQ 240
           FSATM + +Q + + + ++ KRI +     +T  T +  + V    +    C +L     
Sbjct: 180 FSATMPEAVQGLVQRYTRDAKRISIAAEQLATPRTRQTYYEVMPREKLDALCRIL----- 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +T  + IIFC  +     L  SL+ +G+    +HG++ Q  R +++  F+EG  +L+V
Sbjct: 235 DVETPSSAIIFCRTRSEADALGESLQGRGYLSEVLHGDMSQAQRDRVMKRFREGQAELLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIPDV HV N+DVPN  E Y+HRIGRTGRAGR G A TL+   + + +  I
Sbjct: 295 ATDVAARGLDIPDVTHVINYDVPNDPEAYVHRIGRTGRAGRTGLAITLITPRERRMLQII 354

Query: 361 EKLIEKKV 368
           E+    ++
Sbjct: 355 ERASRSRI 362


>gi|322373478|ref|ZP_08048014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C150]
 gi|321278520|gb|EFX55589.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C150]
          Length = 528

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 156/371 (42%), Positives = 232/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  +  AV+ AG+ KP+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +K R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L 
Sbjct: 61  ---DKIRTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +NNIE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T   ++  F+    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMGYLGII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|33599198|ref|NP_886758.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
 gi|33575244|emb|CAE30707.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
          Length = 574

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 154/373 (41%), Positives = 231/373 (61%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL+P ++ A+ +AG+ +PT +Q   IP  +   D+   +QTG+GKTA+F+LP L
Sbjct: 13  MSFEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPAL 72

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNK 117
             +  + G   V + + L+L PTRELA QVAD    YG+N   L  A ++GG+P+ AQ K
Sbjct: 73  NRIAHQPGNKGVGV-QVLVLTPTRELALQVADATASYGRNLPGLRTATVVGGMPYGAQLK 131

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L R  DVL+ TPGR++DH   G++ +N +  LV+DEADRMLDMGFI  I+ I   +P  
Sbjct: 132 ALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPKE 191

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQ 236
           RQTLLFSAT+   + +++E  ++ P+RIE+         I    +  YA   + K  LL 
Sbjct: 192 RQTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKHANITQSLL--YADDAAHKMRLLD 249

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +L+    +   I+F   K+   +L   L  QGF+  A+HG+++QR R + L   + G +
Sbjct: 250 HVLRDA-RLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGQLQRGQL 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARG+D+  + H  NFD+P +AE+Y+HRIGRTGRAGR G+AFTL    +   
Sbjct: 309 RVLVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGQAFTLATHAERHK 368

Query: 357 IDAIEKLIEKKVD 369
           +  IE  I + ++
Sbjct: 369 VRRIEHYIGQSIN 381


>gi|331012221|gb|EGH92277.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 559

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 151/367 (41%), Positives = 234/367 (63%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPSK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++PK +++ T + T   IE   +  +A   +K + +  LL+ 
Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 243 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKV 368
           ++  +KV
Sbjct: 362 RVTGQKV 368


>gi|172040364|ref|YP_001800078.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
 gi|171851668|emb|CAQ04644.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
          Length = 778

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 156/394 (39%), Positives = 242/394 (61%), Gaps = 18/394 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLSP+V  AV   G+ KP+PIQ +TIPL++   DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 133 FGDLGLSPEVFDAVRAVGFTKPSPIQEQTIPLLMAGEDVVGLAQTGTGKTAAFALPILSR 192

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           L     + R P+ L+L PTRELA QVA++FE + +    + +  + GG P+ AQ   L R
Sbjct: 193 L---NLKSRKPQALVLAPTRELALQVAESFEDFAEKMGGVNILPIYGGQPYGAQLSGLRR 249

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  +G L ++ +  +V+DEAD ML+MGF   ++ I    P  +Q  
Sbjct: 250 GAHVVVGTPGRVIDHLQKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPEDKQVA 309

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++ +S+ +L +P+ + V +   TAE IE  ++  +  + +K   L ++L+ 
Sbjct: 310 LFSATMPSAIRHLSKRYLNSPQEVTVKSTQRTAENIEQDYLIVH--HREKLDALTRILEV 367

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D     I+F   K +   L   L  +G+   AI+G+I Q  R + +   K+G + ++VA
Sbjct: 368 TD-FDAMIMFVRTKNDTEELAERLRARGYEAAAINGDIAQAQRERTVDQLKDGRLDILVA 426

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HVFN+D+P   E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 427 TDVAARGLDVERITHVFNYDIPRDTESYVHRIGRTGRAGRSGRAVLFVTPRERRMLKSIE 486

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           +  + +++ +  +L S++         Q N ARK
Sbjct: 487 RATKSRLNEI--ELPSVD---------QVNEARK 509


>gi|109898753|ref|YP_662008.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c]
 gi|109701034|gb|ABG40954.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 458

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 158/367 (43%), Positives = 229/367 (62%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL  +++ A+   GY   T IQ + IPLVL +HD+  +AQTGTGKTA+F LP+L
Sbjct: 1   MSFEALGLRDELIHAIATQGYSVATDIQREAIPLVLAQHDLLAVAQTGTGKTAAFTLPLL 60

Query: 61  TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  K   +V+  R+LI+ PTRELAAQVA + E Y    N+    + GG+  E Q  +L
Sbjct: 61  QRLAAKQSTKVQGVRSLIVTPTRELAAQVAISVEIYSTQLNIRSFAVYGGVRIEPQIAQL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G DVLI TPGR+LD + +  L   N+EILV DEADRMLD+GFI  ++ I SL+P  RQ
Sbjct: 121 QEGVDVLIATPGRLLDLYEQRALHFENLEILVFDEADRMLDLGFIDDVKRIQSLLPVKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT + +++  +   L  PK IEV+  +ST + +   F     + ++K A L QL+
Sbjct: 181 TLLFSATFSKQIKHFAREMLNAPKTIEVSAVNSTVDLVAQTFHPI--EQARKSAALIQLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q Q      ++F   K+    L   LE  G +  +IH N  Q +R + L+ FK G IQ++
Sbjct: 239 Q-QHRWSQTLVFIRTKRTADALVTELEDAGIAAASIHANRTQHARTQALNAFKAGEIQVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  +  V N+D+P   E+Y+HRIGRTGRAG  G A +L + ++I  + +
Sbjct: 298 VATDIAARGIDVSQLPCVVNYDLPYVPEDYVHRIGRTGRAGNTGTAISLFSPDEISQLQS 357

Query: 360 IEKLIEK 366
           +E+ +++
Sbjct: 358 LERYLDQ 364


>gi|170016724|ref|YP_001727643.1| putative ATP-dependent RNA helicase [Leuconostoc citreum KM20]
 gi|169803581|gb|ACA82199.1| Putative ATP-dependent RNA helicase [Leuconostoc citreum KM20]
          Length = 522

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 166/421 (39%), Positives = 258/421 (61%), Gaps = 13/421 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+   GYV+ TPIQ KTIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLSQDILDAIATHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    LI+ PTRELA Q A+  +K G++ ++ V ++ GG     Q + L+
Sbjct: 61  EHIDLSNKNIQ---ALIVSPTRELAIQTAEELKKLGRDKHVDVQVVFGGADIRRQIQNLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LDH NR  + ++N++ LV+DEAD ML+MGF+  I++I    P  RQT
Sbjct: 118 SHPQILVGTPGRLLDHINRKTVKIDNVKTLVLDEADEMLNMGFLDDIESIIKNTPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+ NP+ I++     T + ++  FV    + ++K   + ++  
Sbjct: 178 LLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFV--RMRENEKFDTMTRIFD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   K  I+F   K+ V  L   LE +G+    +HG++ Q+ R ++L+ FK   I ++V
Sbjct: 236 VQ-APKLAIVFGRTKRRVEELSRGLEARGYRAAGLHGDLTQQMRSRVLAQFKSHEINILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HV+NFD+P   E+Y+HRIGRTGRAG  G + TLVA  ++ ++ A+
Sbjct: 295 ATDVAARGLDVKDVTHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTLVAPNEMDYLRAV 354

Query: 361 EKLIEKKVDWLNGDLSSLNPP-LEKIDIAQ---HNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           E L +K++  L  + +SL    + KI  A    HN  +K + + +  T  D+    YSS+
Sbjct: 355 EDLTKKRMTPL--EPASLKEARIGKIKNAADEVHNIVKKTD-VSEIQTEVDKLTNQYSSE 411

Query: 417 K 417
           +
Sbjct: 412 E 412


>gi|39995599|ref|NP_951550.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
 gi|39982362|gb|AAR33823.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
 gi|298504618|gb|ADI83341.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens KN400]
          Length = 450

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 153/366 (41%), Positives = 229/366 (62%), Gaps = 5/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+L L+P ++ AV   GY +PTP+Q   +P  L+  D+   AQTGTGKTA+FVLP L
Sbjct: 1   MTFAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPAL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L    +   R PR L+L PTRELA QV D    YG    +    ++GG+P+ AQ + L
Sbjct: 61  QRLSSPPQGPGRGPRVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLRLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D ++ TPGR++D  +R  L ++ +E+LV+DEADRMLDMGF   +  I +  P TRQ
Sbjct: 121 SAPVDFIVATPGRLVDLLDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPATRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQL 238
           TLLF+ATM   + +++   L+ P+RI++    +T E IE    VA    +  +  LL+ L
Sbjct: 181 TLLFTATMDSAMARLAGRLLREPERIDIAGTKTTHEHIEQRLHVADDLHHKNR--LLRHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + + ++++  IIF   K++  NL   L+ QG S  A+HG++ Q +R + ++  K+G I+L
Sbjct: 239 I-TDESLRRAIIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRL 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  + HV NFD+P  AE+Y+HRIGRTGRAG  G A +  +  ++ ++ 
Sbjct: 298 LVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYLA 357

Query: 359 AIEKLI 364
            IE+ I
Sbjct: 358 RIERYI 363


>gi|126174213|ref|YP_001050362.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125997418|gb|ABN61493.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 467

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 155/363 (42%), Positives = 230/363 (63%), Gaps = 4/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ A+ + GY +PTPIQ K IP++L+  ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSDPILRAITELGYSQPTPIQEKAIPVILKGKNLLAGAQTGTGKTASFVLPIL 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +  +  + R +  R LIL PTRELA QV DN  KY K   LT   + GG+    Q ++L
Sbjct: 61  QMFADMPKIRAKRVRALILTPTRELAVQVEDNISKYAKYLPLTSMAMYGGVDAAPQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + I +LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDEISVLVLDEADRMLDMGFIEDINKIIERLPTERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++ +++  ++NP  IE+   S+ A  I+   +       KK ALL +L+
Sbjct: 181 NLLFSATLSKQVRFLAKTAVENPVEIEIARDSANAPQIDQWLITV--DKDKKSALLSKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  +IF   K+    L   LEK+G +  AIH    Q  R ++L +FK G ++ +
Sbjct: 239 TEQ-AWEQALIFIQTKQGAAKLVSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGRLRFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +A+RG+DI  +  V N+D+P+ A++YIHRIGRTGRAG  G+A + V+K+D +++ A
Sbjct: 298 VATGVASRGIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGACGEAISFVSKDDFRNLCA 357

Query: 360 IEK 362
           IE+
Sbjct: 358 IER 360


>gi|120405422|ref|YP_955251.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           vanbaalenii PYR-1]
 gi|119958240|gb|ABM15245.1| ATP-dependent RNA helicase CsdA [Mycobacterium vanbaalenii PYR-1]
          Length = 564

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 153/370 (41%), Positives = 229/370 (61%), Gaps = 10/370 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL + P V+ AV D GY  P+PIQ  TIP +L   DV G+AQTGTGKTA+F +P+L
Sbjct: 13  LTFADLQIHPAVLQAVADVGYETPSPIQAATIPAILDGSDVVGLAQTGTGKTAAFAIPIL 72

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + ++      R  + L+L PTRELA QVA+ F +YG +  + V  + GG  +  Q   L+
Sbjct: 73  SKIDTDS---RNTQALVLAPTRELALQVAEAFGRYGAHLRVNVLPIYGGASYVPQLSGLK 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  +G L +++++ LV+DEAD ML MGF   ++ I +  P  +Q 
Sbjct: 130 RGAQVVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQV 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++K++  +L +P  + V + + TAE I   +      Y +K   L +LL+
Sbjct: 190 ALFSATMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYF--LVSYPRKMDALTRLLE 247

Query: 241 SQ--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +  D M   I+F   K+    +   L  +GF+  AI+G+I Q  R + +S  K+GTI +
Sbjct: 248 VEQGDAM---IVFVRTKQATEEVAEKLRSRGFAAAAINGDIPQAVRERTISQLKDGTIDI 304

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  + HV NFD+P+  E+Y+HRIGRTGRAGR G A   V   +   + 
Sbjct: 305 LVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLG 364

Query: 359 AIEKLIEKKV 368
           AIE++  +K+
Sbjct: 365 AIERVTRQKL 374


>gi|119944600|ref|YP_942280.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119863204|gb|ABM02681.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 403

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 156/375 (41%), Positives = 232/375 (61%), Gaps = 9/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  +V AV + GY  PTPIQ + IP++L   ++   AQTGTGKTASFVLP+L
Sbjct: 1   MLFSTLKLSDPIVKAVTELGYQTPTPIQEQAIPVILAGKNLIAAAQTGTGKTASFVLPIL 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +++    R +  R LIL PTRELA QV +N  +YGK   L    + GG+  E Q ++L
Sbjct: 61  QNLIDAPAVRAKRIRVLILTPTRELAVQVENNIAQYGKYLPLKSMAMYGGVDSEPQKQQL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + R  +  + +E+LVIDEADRMLDMGF+P I  I   +P  RQ
Sbjct: 121 IEGVDILVATPGRLLDMYTRRAIHFDELEVLVIDEADRMLDMGFLPDINKIVERLPLQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++D+++ +++  + +   I ++    TA  IE C ++       K ALL  L+
Sbjct: 181 NLLFSATLSDQVRFLAKTAITDAVEIAISPDYRTAPQIEQCLISV--DKDNKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  +  +IF   K+    L   LEK+G    AIH    Q  R ++L++FK G +  +
Sbjct: 239 -IENQWQQALIFIETKRGAAKLVSQLEKRGIKAEAIHSGRSQAVRTQLLADFKSGQLNFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P+ A++Y+HRIGRTGRAG  G+A + V+++D +++ A
Sbjct: 298 VATGIAARGIDIDSLARVVNYDLPDEADDYVHRIGRTGRAGVSGEAISFVSRDDFRNLCA 357

Query: 360 IEK-----LIEKKVD 369
           IE      +  KK+D
Sbjct: 358 IENRLGEFITRKKID 372


>gi|239816654|ref|YP_002945564.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
 gi|239803231|gb|ACS20298.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
          Length = 601

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 155/373 (41%), Positives = 236/373 (63%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +L L+P ++ AV + GY  PTPIQ + IP VL+ HD+ G AQTGTGKTA+F LPML
Sbjct: 1   MNFDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L  G +          R L+L PTRELAAQV ++   YGK   L   ++ GG+    Q
Sbjct: 61  HKLSTGASATNKFGGIGIRALVLTPTRELAAQVEESVRTYGKYLELDSTVIFGGVGMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL++G D+L+ TPGR+LD   +G L ++ +++L++DEADRMLDMGFI  ++ I +LVP
Sbjct: 121 ISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE++ ++   L+NP+ I+V   ++T + I    V       KK ALL
Sbjct: 181 KEKQSLLFSATFSDEIRDLAATLLKNPQSIQVTPRNTTVQRITQ--VIHPVGRGKKKALL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             ++ +++     ++F   K    ++   L K G    A+HGN  Q +R + L+ FK G 
Sbjct: 239 AHII-NENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGD 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ +VA+D+AARG+DI ++ HV N+++PN +E+Y+HRIGRTGRAG  G+A + V  ++  
Sbjct: 298 IRALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCMDEEG 357

Query: 356 HIDAIEKLIEKKV 368
            +  IE+  ++ +
Sbjct: 358 FMQEIERFTKQTI 370


>gi|120610479|ref|YP_970157.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120588943|gb|ABM32383.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
          Length = 599

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 158/370 (42%), Positives = 237/370 (64%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AV + GY  PTPIQ + IP VL  HD+   AQTGTGKTA+F LPML
Sbjct: 1   MTFDELNLAPAILKAVHEQGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML 60

Query: 61  TIL-EKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L + G AR     R L+L PTRELAAQV +N   Y K+ ++   ++ GG+    Q  +
Sbjct: 61  HRLTQGGTARPAGGIRALVLTPTRELAAQVEENLRAYAKHLDVKSTVIFGGVGMNPQIDR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++RG D+L+ TPGR+LD   +G L ++ +EILV+DEADRMLDMGFI  ++ + +LVP  +
Sbjct: 121 IKRGVDILVATPGRLLDLQQQGFLDLSRVEILVLDEADRMLDMGFIHDVKKVLALVPRDK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+LLFSAT +DE+++++   L+NP+ I+V   ++T + I    V       KK  +L  +
Sbjct: 181 QSLLFSATFSDEIRELAGTLLKNPQSIQVTPRNTTVQRITQ--VIHPVGRGKKKQVLLHI 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +Q Q      ++F   K    N+   L K G +  A+HGN  Q +R + L+ FK G I+ 
Sbjct: 239 IQ-QHNWSQVLVFTRTKFGANNVAEFLTKNGVTAMALHGNKSQSARTQALAGFKSGDIRA 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI ++ HV N+++PN  E+Y+HRIGRTGRAG  G+A +LV  ++   + 
Sbjct: 298 LVATDIAARGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGASGEAVSLVCMDEEGFMM 357

Query: 359 AIEKLIEKKV 368
            IE+  ++++
Sbjct: 358 EIERFTKQEI 367


>gi|107099414|ref|ZP_01363332.1| hypothetical protein PaerPA_01000426 [Pseudomonas aeruginosa PACS2]
          Length = 624

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 166/406 (40%), Positives = 243/406 (59%), Gaps = 16/406 (3%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-------EKGRARVR 71
           AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L  L        + R   R
Sbjct: 4   AGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFPAGHPDREHRHGPR 63

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
             R L+L PTRELAAQV D+F+ Y ++  L    + GG+    Q + L +G DVL+  PG
Sbjct: 64  QARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMNPQIQALAKGVDVLVACPG 123

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+LD   + K+ ++++EILV+DEADRMLDMGFI  ++ + + +P  RQ LLFSAT + ++
Sbjct: 124 RLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPPKRQNLLFSATFSKDI 183

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
             ++   L NP+RIEV  P++T E IE       A   +K ALL  L+ +    +  ++F
Sbjct: 184 VDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPA--PQKRALLAHLV-TVGAWEQVLVF 240

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
              K     L   L K G    AIHGN  Q +R K L++FK   ++++VA+D+AARGLDI
Sbjct: 241 TRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRILVATDIAARGLDI 300

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
             + HV N+++PN  E+Y+HRIGRTGRAGR G+A +LVA ++ K + AIEK+  +++   
Sbjct: 301 DQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKAIEKMTRQRIP-- 358

Query: 372 NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           +GD    +P     ++AQ     +    PQK    D+ +++   +K
Sbjct: 359 DGDAQGFDPEAVLPEVAQP----EPREAPQKQPRRDKERRSSRERK 400


>gi|78776809|ref|YP_393124.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251]
 gi|78497349|gb|ABB43889.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 432

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 168/423 (39%), Positives = 254/423 (60%), Gaps = 19/423 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LG+   ++ A+ D GY KPT IQ + IPL+L + DV   AQTGTGKTA+F L ML
Sbjct: 1   MSFEKLGVIKPLLSAIKDLGYEKPTTIQTRAIPLILAKSDVFATAQTGTGKTAAFGLGML 60

Query: 61  TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L K    + R  R L++ PTREL+ Q+ ++ + Y KN  + +A+L+GG   E+Q K L
Sbjct: 61  QRLRKTSDDKQRALRGLVIAPTRELSIQIYEDLQSYAKNMGINIAVLVGGKDLESQQKIL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D++I TPGR+L+H ++G L ++++EI V+DEADRMLDMGF+  I+ I  ++P   Q
Sbjct: 121 KEGVDIVIATPGRVLEHVDKG-LSLSHVEIFVLDEADRMLDMGFMKEIRRIHPILPKRHQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT +D+++K+S+  L  P  IE +  +ST +TI    VA      KK  LL  ++
Sbjct: 180 TLLFSATFSDKVRKLSKLILTKPAFIETSKKNSTVDTINQ--VAYLVDTEKKAPLLAYII 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S++  +  ++F   K +   L   L+K G     IHG+  Q +R+K L+ FKEG I+++
Sbjct: 238 GSRN-FRQVLVFTRTKASADLLVVELKKDGLKCGIIHGDKTQANRLKTLNEFKEGKIKVL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI ++  V N+++P+  E+Y+HR+GRTGRAGR G A +L+   +   I  
Sbjct: 297 VATDIASRGLDIEELPFVINYELPSIPEDYVHRVGRTGRAGRDGMAISLIDIYEKFDIKD 356

Query: 360 IEKLIEKKVDW--------------LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           IEKLI  K+                L+ D   L    +K+++      RK     +KS  
Sbjct: 357 IEKLIGMKIPQEIIAGFEPDPTIRRLDQDELKLKSEHKKVEVKHERKPRKKEDGSKKSAN 416

Query: 406 FDR 408
           + +
Sbjct: 417 YKK 419


>gi|312863656|ref|ZP_07723894.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           vestibularis F0396]
 gi|311101192|gb|EFQ59397.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           vestibularis F0396]
          Length = 529

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 156/371 (42%), Positives = 231/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  +  AV+ AG+ KP+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               K R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L 
Sbjct: 61  N---KIRTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +NNIE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T   ++  F+    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMGYLGII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|256821642|ref|YP_003145605.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256795181|gb|ACV25837.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 598

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 154/361 (42%), Positives = 231/361 (63%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLSP V+ ++   GY +P+PIQ  +IP+++   D+ G AQTGTGKTA+F LPML+ 
Sbjct: 10  FDELGLSPAVLKSIKQVGYEQPSPIQSASIPVLMAGKDIIGQAQTGTGKTAAFALPMLSR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+   A+    + L+L PTRELA QVA+  + Y KN   L V  + GG  ++ Q ++L+R
Sbjct: 70  LD---AKDNNTQLLVLAPTRELAIQVAEACQSYAKNMPGLNVLPIYGGQKYDIQLRQLKR 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  RG L ++N++ LV+DEAD ML MGFI  ++ +    P TRQ  
Sbjct: 127 GAQIVVGTPGRVMDHIRRGTLKLDNLKALVLDEADEMLRMGFIDDVEWVLGHTPKTRQIA 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++KV+E +L  P+ I++ T +STA TI   +      +  K   L ++L++
Sbjct: 187 LFSATMPKEIKKVAEKYLHEPEHIKIQTKTSTATTINQRYWLVSGIH--KLDALTRVLET 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++     IIF   K     L   L  +GF   A++G+I Q +R +I+   K+G I +++A
Sbjct: 245 EE-FDGMIIFVRTKIATTELADKLTARGFRAEALNGDIAQTTRERIVEKLKKGQIDILIA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A   VA  + + + AIE
Sbjct: 304 TDVAARGLDVERISHVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFVAHRERRMLKAIE 363

Query: 362 K 362
           +
Sbjct: 364 R 364


>gi|33593984|ref|NP_881628.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|33564058|emb|CAE43326.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|332383401|gb|AEE68248.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
          Length = 574

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 154/373 (41%), Positives = 231/373 (61%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL+P ++ A+ +AG+ +PT +Q   IP  +   D+   +QTG+GKTA+F+LP L
Sbjct: 13  MSFEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPAL 72

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNK 117
             +  + G   V + + L+L PTRELA QVAD    YG+N   L  A ++GG+P+ AQ K
Sbjct: 73  NRIAHQPGNKGVGV-QVLVLTPTRELALQVADATASYGRNLPGLRTATVVGGMPYGAQLK 131

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L R  DVL+ TPGR++DH   G++ +N +  LV+DEADRMLDMGFI  I+ I   +P  
Sbjct: 132 ALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPKE 191

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQ 236
           RQTLLFSAT+   + +++E  ++ P+RIE+         I    +  YA   + K  LL 
Sbjct: 192 RQTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKHANITQSLL--YADDAAHKMRLLD 249

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +L+    +   I+F   K+   +L   L  QGF+  A+HG+++QR R + L   + G +
Sbjct: 250 HVLRDA-RLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGQLQRGQL 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARG+D+  + H  NFD+P +AE+Y+HRIGRTGRAGR G+AFTL    +   
Sbjct: 309 RVLVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGQAFTLATHAERHK 368

Query: 357 IDAIEKLIEKKVD 369
           +  IE  I + ++
Sbjct: 369 VRRIEHYIGQSIN 381


>gi|212709939|ref|ZP_03318067.1| hypothetical protein PROVALCAL_00989 [Providencia alcalifaciens DSM
           30120]
 gi|212687451|gb|EEB46979.1| hypothetical protein PROVALCAL_00989 [Providencia alcalifaciens DSM
           30120]
          Length = 657

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 154/381 (40%), Positives = 242/381 (63%), Gaps = 10/381 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS  ++ A+ D GY KP+PIQ + IPL+L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 7   MSFADLGLSASILNALSDLGYEKPSPIQQQCIPLLLDGNDVLGMAQTGSGKTAAFSLPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++   A ++ P+ L+L PTRELA QVA+    + K+ N + V  L GG  ++ Q + L
Sbjct: 67  HNID---ADLKAPQILVLAPTRELAVQVAEAMSDFSKHMNRVNVVALYGGQRYDVQLRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  V++ TPGR+LDH  RG L ++N++ LV+DEAD ML MGFI  ++NI S +P   Q
Sbjct: 124 RQGPQVVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+++PK I +    +T   I   +   Y    +K   L + L
Sbjct: 184 TALFSATMPEPIRRITRRFMKDPKEIRIQASITTRPDIAQSYWTVYGM--RKNEALVRFL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +++D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + ++
Sbjct: 242 EAED-FDAAIIFVRTKNATLEVAETLERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKH 356
           +A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   +   +++
Sbjct: 301 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 360

Query: 357 IDAIEKLIEKKVDWLNGDLSS 377
           ++   KL   +V+  + DL S
Sbjct: 361 VERTMKLTIPEVELPDADLLS 381


>gi|54302687|ref|YP_132680.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46916111|emb|CAG22880.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
          Length = 431

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 168/416 (40%), Positives = 252/416 (60%), Gaps = 11/416 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA    SP++V A+ + GY K TPIQ + IP   +  D+   AQTGTGKTA+F LP++
Sbjct: 1   MSFASQNFSPEIVRALTECGYEKLTPIQAQAIPHARRGSDILANAQTGTGKTAAFSLPII 60

Query: 61  T-ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             ILEK ++R R   R LIL PTRELAAQ+A N  +Y K  +L  A + GG    +Q + 
Sbjct: 61  QQILEKPKSRGRFNVRALILAPTRELAAQIAQNIAEYTKYTDLKTAAIYGGTKMSSQERT 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE+G D+L+ TPGR+++H +   + + NIE LV DEADRMLDMGFI  ++ +   V    
Sbjct: 121 LEKGVDILVATPGRLIEHVDLKNVSLANIEFLVFDEADRMLDMGFITDMRKVMGEVNTNP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + ++  ++ + L+ PKRI V+  ++TA+T+ H  V       +K  LL +L
Sbjct: 181 QIMMFSATSSKQMNALASDILRKPKRIMVDRENTTADTVSH--VVYPVDQERKRELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  ++  K  ++F N K+    L   L+K G      HG+  Q +R + L  FKEG  ++
Sbjct: 239 IGKKN-WKQVLVFVNYKETANELVKELKKDGIKAVLCHGDKAQSARRRALDEFKEGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+++AARGLDI  + HV NFD+P  AE+Y+HRIGRTGRAG  G A + V+KE+   + 
Sbjct: 298 MVATEVAARGLDIQALPHVVNFDMPFLAEDYVHRIGRTGRAGLKGHAISFVSKEEELTLV 357

Query: 359 AIEKLIEK---KVDWLNGDLSSLNPPLEKIDIA---QHNHARKNNPIPQKSTGFDR 408
            +E+LI +   +V  L  + ++ +  ++K++     +    R NNP  Q+S+   R
Sbjct: 358 QVEQLIGQRIHRVQLLGYEPANRDAFVQKMNTKAAFKDRKGRTNNPTEQQSSSERR 413


>gi|77464394|ref|YP_353898.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides 2.4.1]
 gi|77388812|gb|ABA79997.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides 2.4.1]
          Length = 461

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 152/375 (40%), Positives = 228/375 (60%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGLS +++  +  A + +PTPIQ++ IP V+Q  D+ G+AQTGTGKT +F LP+L 
Sbjct: 11  DFSTLGLSERLMQGLAKAQFTQPTPIQVEAIPYVMQGRDLMGLAQTGTGKTLAFGLPLLH 70

Query: 62  ILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L  G      PRT   LIL PTREL  Q+A N E + K   + V  + GG     Q ++
Sbjct: 71  RL-LGVGHPPPPRTIRALILAPTRELVTQIATNLELFTKGTPVKVVTITGGASINRQTER 129

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RGAD+++ TPGR++D  +R  +++++   LV+DEAD+MLDMGFI  ++ I   +P  R
Sbjct: 130 LARGADIMVATPGRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPLKR 189

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM   +++++  +L+ P +++V  P    E I       +     K  LL+  
Sbjct: 190 QTLLFSATMPKLIEELAHTYLREPVKVQVAPPGKPVEKIAQGV--HFTPQGDKAKLLESY 247

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ     +  ++F   K     L   L   GF   +IHGN  Q  R + L+ F++G++ +
Sbjct: 248 LQKHPG-EQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGSLDV 306

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DIP V HV+N+D+PN  ENY+HRIGRT RAG  G A   VA  +++   
Sbjct: 307 LVATDVAARGIDIPGVRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVAPAEMEEFR 366

Query: 359 AIEKLIEKKVDWLNG 373
           A+EKL+++ +  + G
Sbjct: 367 AVEKLLKQPIPVIGG 381


>gi|163739630|ref|ZP_02147039.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           BS107]
 gi|161387089|gb|EDQ11449.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           BS107]
          Length = 458

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 152/376 (40%), Positives = 234/376 (62%), Gaps = 9/376 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ +GL  K++  + + GY  PTPIQ + IP  L   DV G+AQTGTGKTA+F +P++ 
Sbjct: 19  EFSTMGLPEKLLTRIAELGYTDPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLIA 78

Query: 62  -ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +++ GR    +  R L+L PTRELA Q+A N +   +   +   L++GG+    Q  +L
Sbjct: 79  QMMQYGRKPAAKTVRGLVLAPTRELANQIAANLKGLTEGTPIKTGLVVGGVSINPQISRL 138

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+LI TPGR+LD  +RG L + + + LV+DEAD+MLD+GFI  ++ I +L+P  RQ
Sbjct: 139 SRGTDILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEQRQ 198

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  ++ +++ ++LQ+P RIEVN P   A+ I          +  K   L  L 
Sbjct: 199 TMLFSATMPKQMNEIANSYLQSPVRIEVNPPGKAADKITQSV-----HFIAKAEKLSLLK 253

Query: 240 QSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +     K+   ++F   K  +  L  +L   GFS  AIHGN  Q  R + L++FK G ++
Sbjct: 254 ELLGAHKDERTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALASFKSGEVK 313

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIPDV +V+N+++PN  + Y+HRIGRT RAG+ G+A    A +++  +
Sbjct: 314 ILVATDVAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEMGEL 373

Query: 358 DAIEKLIEKKVDWLNG 373
            AI+K +   +   +G
Sbjct: 374 KAIQKTMNLNIPVASG 389


>gi|71734200|ref|YP_275777.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554753|gb|AAZ33964.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 570

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 151/367 (41%), Positives = 234/367 (63%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 19  FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 79  IDPSK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 135

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 136 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 195

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++PK +++ T + T   IE   +  +A   +K + +  LL+ 
Sbjct: 196 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 254 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 313 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 372

Query: 362 KLIEKKV 368
           ++  +KV
Sbjct: 373 RVTGQKV 379


>gi|28868981|ref|NP_791600.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|301381308|ref|ZP_07229726.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302061477|ref|ZP_07253018.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302130057|ref|ZP_07256047.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28852221|gb|AAO55295.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|330877010|gb|EGH11159.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
 gi|330968143|gb|EGH68403.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
 gi|331016872|gb|EGH96928.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 562

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 151/367 (41%), Positives = 234/367 (63%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPTK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++PK +++ T + T   IE   +  +A   +K + +  LL+ 
Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 243 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKV 368
           ++  +KV
Sbjct: 362 RVTGQKV 368


>gi|88798356|ref|ZP_01113941.1| ATP-dependent RNA helicase, DEAD box family protein [Reinekea sp.
           MED297]
 gi|88778796|gb|EAR09986.1| ATP-dependent RNA helicase, DEAD box family protein [Reinekea sp.
           MED297]
          Length = 433

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 154/374 (41%), Positives = 230/374 (61%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  ++ AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP++
Sbjct: 1   MQFSELALADPILKAVTEQGYTTPTPIQAQGIPAVLSGRDLLAAAQTGTGKTAGFTLPII 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
              I E    +    R L+L PTRELAAQV DN   Y K  ++   ++ GG+    Q +K
Sbjct: 61  QHLITENRPVKANRCRVLVLTPTRELAAQVEDNVTAYAKYTDVRSEVVFGGVKINPQMQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+LD  ++  +   ++E+LV+DEADRMLDMGFI  I+ I  L+P  R
Sbjct: 121 LRRGVDILVATPGRLLDLHSQNAIDFRDLEVLVLDEADRMLDMGFIHDIRRIMRLLPTQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT +DE++ +++  ++NP  + V   ++TAE +    +      +KK ALL  L
Sbjct: 181 QNLMFSATFSDEIRALAKTIVENPVEVSVTPKNTTAERVRQQVIPV--DKAKKTALLIDL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ ++T    ++F   K     +   L K      AIHGN  Q +R + LS FK   I++
Sbjct: 239 LK-KETWHQVLVFSRTKHGANRIAEKLNKAKIPAAAIHGNKSQGARTRALSEFKSNDIRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV NFD+PN AE+Y+HRIGRTGRAG  G A +  ++++   + 
Sbjct: 298 LVATDIAARGIDIDQLPHVINFDLPNVAEDYVHRIGRTGRAGSDGDAISFASRDEADLLA 357

Query: 359 AIEKLIEKKVDWLN 372
           A++  I + ++ ++
Sbjct: 358 AVQNFIGQVIERVD 371


>gi|300722435|ref|YP_003711723.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628940|emb|CBJ89523.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Xenorhabdus nematophila ATCC 19061]
          Length = 498

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 160/371 (43%), Positives = 233/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LGL   ++ AV + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MNFESLGLKADILRAVEEQGYAEPTPIQQQAIPVVLSGKDLLASAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRARV--RMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L +   +V  R P R LIL PTRELAAQV +N   Y K   L   ++ GG+    Q  
Sbjct: 61  QRLSESPTQVKGRRPVRALILTPTRELAAQVGENVHNYSKYLKLRSFVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++++EIL++DEADRMLDMGFI  I+ I + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVDLSHVEILILDEADRMLDMGFIHDIRRILNKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L +P  +EV   +S +E I       +    +K  LL  
Sbjct: 181 RQNLLFSATFSDEIKNLANKLLNDPVSVEVARRNSASEQIAQSI--HFVDKKRKGELLSY 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++ SQ+  +  ++F   K     L   L K G +  AIHGN  Q +R + L++FK G I+
Sbjct: 239 MIGSQN-WQQVLVFTRTKHGANKLAELLNKDGVTAAAIHGNKSQGARTRALADFKSGQIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI  + HV N+++PN AE+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 ALVATDIAARGLDIDQLPHVVNYELPNVAEDYVHRIGRTGRADATGQAISLVCVDEHKLL 357

Query: 358 DAIEKLIEKKV 368
             IE+L+++++
Sbjct: 358 KDIERLLKREI 368


>gi|126463236|ref|YP_001044350.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126104900|gb|ABN77578.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 461

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 152/375 (40%), Positives = 229/375 (61%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGLS +++  +  A + +PTPIQ++ IP V+Q  D+ G+AQTGTGKT +F LP+L 
Sbjct: 11  DFSTLGLSERLMQGLAKAQFTQPTPIQVEAIPYVMQGRDLMGLAQTGTGKTLAFGLPLLH 70

Query: 62  ILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L  G      PRT   LIL PTREL  Q+A N E + K   + V  + GG     Q ++
Sbjct: 71  RL-LGVGHPPPPRTIRALILAPTRELVTQIATNLELFTKGTPVKVVTITGGASINRQTER 129

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RGAD+++ TPGR++D  +R  +++++   LV+DEAD+MLDMGFI  ++ I   +P  R
Sbjct: 130 LARGADIMVATPGRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPLKR 189

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM   +++++  +L+ P +++V  P    E I       +     K  LL+  
Sbjct: 190 QTLLFSATMPKLIEELAHTYLREPVKVQVAPPGKPVEKIAQGV--HFTPQGDKAKLLESY 247

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ +   +  ++F   K     L   L   GF   +IHGN  Q  R + L+ F++G++ +
Sbjct: 248 LQ-KHPREQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGSLDV 306

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DIP V HV+N+D+PN  ENY+HRIGRT RAG  G A   VA  +++   
Sbjct: 307 LVATDVAARGIDIPGVRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVAPAEMEEFR 366

Query: 359 AIEKLIEKKVDWLNG 373
           A+EKL+++ +  + G
Sbjct: 367 AVEKLLKQPIPVIGG 381


>gi|300214210|gb|ADJ78626.1| ATP-dependent RNA helicase [Lactobacillus salivarius CECT 5713]
          Length = 492

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 158/372 (42%), Positives = 234/372 (62%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ AV  +G+ + TPIQ +TIPLVL  +DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFGELGLDKSLLKAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+     +R  + +I+ PTRELA Q  +     GK     V ++ GG     Q K+LE
Sbjct: 61  QQLD---LDLRQIQAVIISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLE 117

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +L+ TPGR+LDH  RG + + +++ L++DEAD MLDMGF+  I+ I   VP  RQ
Sbjct: 118 QHTPHILVGTPGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E+ K+ E F+ NP+ +++     T + ++  FV T  +  +K  ++ +L+
Sbjct: 178 TLLFSATMPKEILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKT--KEFEKFDIMTRLI 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  I+F   K+ V  L   LE +G++   IHG++ Q+ RM +L  FK G + ++
Sbjct: 236 DVQ-APELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG HG + T V   ++ ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRV 354

Query: 360 IEKLIEKKVDWL 371
           IEKL +K++D L
Sbjct: 355 IEKLTKKRMDPL 366


>gi|293602448|ref|ZP_06684894.1| ATP-dependent RNA helicase [Achromobacter piechaudii ATCC 43553]
 gi|292819210|gb|EFF78245.1| ATP-dependent RNA helicase [Achromobacter piechaudii ATCC 43553]
          Length = 597

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 156/377 (41%), Positives = 231/377 (61%), Gaps = 18/377 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+P ++ AV +AG+  PT +Q   IP  L  HD+   +QTG+GKTA+F+LP L
Sbjct: 1   MSFENLGLAPALLSAVQEAGFNTPTAVQAAAIPQALAGHDLMVSSQTGSGKTAAFMLPAL 60

Query: 61  TILEKGRARVRMP-------RTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPF 112
             +       +MP       + L+L PTRELA QV +    YG+   +L  A ++GG+P+
Sbjct: 61  HRI------AQMPANKGVGVQVLVLTPTRELALQVTEATATYGRKLADLRTATVVGGMPY 114

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
            AQ K L R  DVL+ TPGR++DH   G++ +N +  LV+DEADRMLDMGFI  I+ I S
Sbjct: 115 GAQLKALSRRVDVLVATPGRLIDHLQSGRVKLNTVHTLVLDEADRMLDMGFIEDIETIVS 174

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKK 231
            +P  RQTLLFSAT+   + K++   +++P+RIE+         I    +  YA   S K
Sbjct: 175 RLPEDRQTLLFSATLDGTIAKLAAKMMRDPQRIEMAGAKEKHTNITQSLL--YADDASHK 232

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL  +L+    +   I+F + K+   +L   L  QGF+  A+HG+++QR R + LS  
Sbjct: 233 MQLLDHVLRDA-KLDQAIVFTSTKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLSQL 291

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G ++++VA+D+AARG+D+  + H  NFD+P +AE+Y+HRIGRTGRAGR+G AFTL   
Sbjct: 292 QRGQLRILVATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRTGRAGRNGLAFTLATH 351

Query: 352 EDIKHIDAIEKLIEKKV 368
            +   +  IE  I + +
Sbjct: 352 SERHKVRRIEHYIGQSI 368


>gi|221640283|ref|YP_002526545.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides KD131]
 gi|332559285|ref|ZP_08413607.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
           WS8N]
 gi|221161064|gb|ACM02044.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
           KD131]
 gi|332276997|gb|EGJ22312.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
           WS8N]
          Length = 453

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 152/375 (40%), Positives = 228/375 (60%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGLS +++  +  A + +PTPIQ++ IP V+Q  D+ G+AQTGTGKT +F LP+L 
Sbjct: 3   DFSTLGLSERLMQGLAKAQFTQPTPIQVEAIPYVMQGRDLMGLAQTGTGKTLAFGLPLLH 62

Query: 62  ILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L  G      PRT   LIL PTREL  Q+A N E + K   + V  + GG     Q ++
Sbjct: 63  RL-LGVGHPPPPRTIRALILAPTRELVTQIATNLELFTKGTPVKVVTITGGASINRQTER 121

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RGAD+++ TPGR++D  +R  +++++   LV+DEAD+MLDMGFI  ++ I   +P  R
Sbjct: 122 LARGADIMVATPGRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPLKR 181

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM   +++++  +L+ P +++V  P    E I       +     K  LL+  
Sbjct: 182 QTLLFSATMPKLIEELAHTYLREPVKVQVAPPGKPVEKIAQGV--HFTPQGDKAKLLESY 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ     +  ++F   K     L   L   GF   +IHGN  Q  R + L+ F++G++ +
Sbjct: 240 LQKHPG-EQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGSLDV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DIP V HV+N+D+PN  ENY+HRIGRT RAG  G A   VA  +++   
Sbjct: 299 LVATDVAARGIDIPGVRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVAPAEMEEFR 358

Query: 359 AIEKLIEKKVDWLNG 373
           A+EKL+++ +  + G
Sbjct: 359 AVEKLLKQPIPVIGG 373


>gi|190892959|ref|YP_001979501.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652]
 gi|190698238|gb|ACE92323.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652]
          Length = 565

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 155/375 (41%), Positives = 234/375 (62%), Gaps = 4/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LG+S  +V  +   G   PTPIQ + IPL+LQ  D+ G+AQTGTGKTA+F LP++ 
Sbjct: 24  NFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLQGRDLIGLAQTGTGKTAAFGLPLIE 83

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L  ++ R   R  RTLIL PTREL  Q+ADN +K+ +   L + +++GG+    Q  +L
Sbjct: 84  KLLADERRPDNRTTRTLILAPTRELVNQIADNLKKFIRKSPLRINVVVGGVSINKQQLQL 143

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G DVL+ TPGR+LD  NR  + +  +  LV+DEAD+MLD+GF+  ++ I  LVP  RQ
Sbjct: 144 EKGTDVLVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDLGFVHDLRKIAKLVPKKRQ 203

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   +  ++  +L +P ++EV  P   A+ +E  +V   A  + K  LL++ L
Sbjct: 204 TMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQ-YVHFVAGKNDKTELLRKSL 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++     I+F   K     L   L+  G+SV +IHGN  Q  R + L  F++G+I+ +
Sbjct: 263 -TENPDGRAIVFLRTKHGAEKLMKHLDNIGYSVASIHGNKSQGQRERALKAFRDGSIKTL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DIP V HV+N+D+P   + Y+HRIGRT RAGR G A    A ++ K +  
Sbjct: 322 IATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRD 381

Query: 360 IEKLIEKKVDWLNGD 374
           IE+L+   +   +G+
Sbjct: 382 IERLMGIDIAVASGE 396


>gi|332304872|ref|YP_004432723.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172201|gb|AEE21455.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 576

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 153/372 (41%), Positives = 237/372 (63%), Gaps = 11/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L  +++ A+   GY KPTPIQ + IPL+++ HD+ G AQTGTGKTA+F LPML
Sbjct: 7   MTFKDLNLPAELLQALEKVGYEKPTPIQAQCIPLIMEGHDLLGTAQTGTGKTAAFALPML 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
             ++   +  ++   L+L PTRELA QVA+ F+ Y   +  L V  + GG  ++ Q ++L
Sbjct: 67  ANVDANNSNTQL---LVLAPTRELAIQVAEAFQVYASFSRKLNVLPIYGGSSYDNQIRQL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA V++ TPGR++DH  +G L ++N++ LV+DEAD ML MGFI  ++ I S  P  RQ
Sbjct: 124 RRGAQVVVGTPGRVIDHIKKGTLKLDNLKFLVLDEADEMLRMGFIDDVEWILSHAPAERQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQ 237
           T LFSATM D ++K+++ +L +PK++++ +  +TA TI+  +C VA +     K   L +
Sbjct: 184 TALFSATMPDPIRKITKRYLSDPKQVKIESKVATASTIKQRYCQVAGH----HKLEALTR 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++ ++     IIF   K   + L   L  +G++V  ++G+I Q SR + +   K G I 
Sbjct: 240 IMEVEE-FDAVIIFVRTKTATMELSEKLSARGYAVEPLNGDIPQNSRERTVERLKRGKID 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARGLD+  V HV N+DVP   E+Y+HRIGRTGRAGR G A   ++  + + +
Sbjct: 299 ILVATDVVARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAGRQGDAILFISHREKRML 358

Query: 358 DAIEKLIEKKVD 369
            +IE+   + +D
Sbjct: 359 FSIERATRQSID 370


>gi|149914630|ref|ZP_01903160.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
           AzwK-3b]
 gi|149811423|gb|EDM71258.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
           AzwK-3b]
          Length = 470

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 162/375 (43%), Positives = 238/375 (63%), Gaps = 9/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++GL   +V  +   G  +PTPIQ   IP  L   DV G+AQTGTGKTA+F LP+L  
Sbjct: 34  FEEMGLPGPLVKKLALMGITEPTPIQTHAIPFALDSEDVMGLAQTGTGKTAAFGLPLLAK 93

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L  E G+   +  R+LIL PTRELA Q+ D      K+  + VAL++GG    AQ K+++
Sbjct: 94  LMEEPGKPAPKAVRSLILAPTRELAGQIRDTLLPLVKDTPIKVALVVGGASIGAQIKRMQ 153

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVL+ TPGR+LD  +R  L +++   LV+DEAD+MLD+GFI  ++ I  L+P TRQT
Sbjct: 154 MGTDVLVATPGRLLDLLDRRALSLSDTRFLVLDEADQMLDLGFIHALRKIAGLLPSTRQT 213

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCALLQQL 238
           +LFSATM  ++++++ ++L +PKR++V+ P   A+ +     F+A  A    K  LL +L
Sbjct: 214 MLFSATMPKQMEEIAGSYLTHPKRVQVSPPGKAADKVTQGVHFIAKAA----KGDLLVEL 269

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L      +  ++F   K     L   LE+ G++V AIHGN  Q  R + L  F++G +++
Sbjct: 270 LDKHRE-ELALVFARTKHGSDKLARKLEQAGYAVAAIHGNKSQGQRERALRAFRDGEVRV 328

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIPDV HV+NFD+PN  ENY+HRIGRT RAGR G A    A +++  + 
Sbjct: 329 LVATDVAARGLDIPDVKHVYNFDLPNVPENYVHRIGRTARAGRDGAAVAFCAPDEMGELK 388

Query: 359 AIEKLIEKKVDWLNG 373
            I+K+++  +  L+G
Sbjct: 389 DIQKVMKMSIPVLSG 403


>gi|170744521|ref|YP_001773176.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168198795|gb|ACA20742.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
          Length = 499

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 152/370 (41%), Positives = 226/370 (61%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL+  ++ A+ + GYV PTPIQ + +P  +   D+CGIAQTGTGKTA+F LP+L  
Sbjct: 4   FVDFGLAAPILKALAETGYVTPTPIQAQAVPQAMAGRDLCGIAQTGTGKTAAFALPILHR 63

Query: 63  LEKGRARVRMPR----TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L     + R PR     L+L PTRELA+Q+A++F  YGK    +  ++ GG+    Q + 
Sbjct: 64  LASETPQRRAPRRGCRVLVLSPTRELASQIAESFGDYGKFLPFSTTVVFGGVTIGRQERA 123

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+L+ TPGR+LD  +R  L ++ +E LV+DEAD+MLD+GFI  ++ I +L+P  R
Sbjct: 124 LANGVDILVATPGRLLDLIDRRSLSLDAVEYLVLDEADQMLDLGFIHALKRIVTLLPKAR 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM   +  ++  +L++P ++ V   ++TAE +E   V  +     K ALL  +
Sbjct: 184 QSLFFSATMPRNIATLAAQYLRDPVQVAVTPVATTAERVEQRVV--HVPTGAKQALLATI 241

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+   ++   ++F   K     +   LEK G    AIHGN  Q  R + L+ F+ G  ++
Sbjct: 242 LRDA-SIDRVLVFTRTKHGADRVVRGLEKAGIGSAAIHGNKSQPQRERALAAFRAGICRV 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  V HV NFD+PN  E Y+HRIGRT RAG  G A +    E+  ++ 
Sbjct: 301 LVATDIAARGIDVEGVSHVVNFDLPNVPEAYVHRIGRTARAGADGLAISFCNDEERAYLR 360

Query: 359 AIEKLIEKKV 368
            IE+L  +KV
Sbjct: 361 DIERLTRQKV 370


>gi|84394092|ref|ZP_00992827.1| Superfamily II DNA and RNA helicase [Vibrio splendidus 12B01]
 gi|86146725|ref|ZP_01065046.1| Superfamily II DNA and RNA helicase [Vibrio sp. MED222]
 gi|84375283|gb|EAP92195.1| Superfamily II DNA and RNA helicase [Vibrio splendidus 12B01]
 gi|85835572|gb|EAQ53709.1| Superfamily II DNA and RNA helicase [Vibrio sp. MED222]
          Length = 428

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 167/419 (39%), Positives = 252/419 (60%), Gaps = 13/419 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P++V A+ + GY K TPIQ K IP+  + HD+   AQTGTGKTA+F LP++
Sbjct: 1   MSFSSQGFAPELVKALTECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPVI 60

Query: 61  T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +L  G+   R   R LIL PTRELAAQ+A N + Y K   L+V+ + GG    +Q ++
Sbjct: 61  QHLLNSGKKASRGTARGLILAPTRELAAQIAQNIKDYVKYTELSVSAVYGGNKMSSQVRQ 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H   G + + N+E LV DEADR+LDMGFI  ++ I   V  + 
Sbjct: 121 LELGVDILVATPGRLEEHLEAGNVSIANLEFLVFDEADRILDMGFINAVRKIMLDVETSP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L ++S + L+ PKRI V   +STA T+ H  V       +K  LL +L
Sbjct: 181 QIMMFSATTSTQLNQLSVDILRKPKRISVERENSTASTVGH--VVYPVDQERKTELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F N K+   ++   L+  G      HG+  Q +R + L +FKEG  ++
Sbjct: 239 I-GRKNWRQVLVFVNYKETANDVVKELKLDGIKAVLCHGDKAQSARRRALDDFKEGRARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V +E+   + 
Sbjct: 298 MVATDVAARGLDIEDLPHVINYDMPFLAEDYVHRIGRTGRAGKQGHAISFVNREEELTVV 357

Query: 359 AIEKLIE---KKVDWLNGDLSSLNPPLEKIDIA---QHNHARKNNP--IPQKSTGFDRR 409
            +E LI+   ++V+    +    +  +EK++     ++   RKNN    PQ     +RR
Sbjct: 358 QVETLIQQRIRRVEQPGYEPKKRDAYIEKLNTKSAYKNRQGRKNNANEEPQDQASAERR 416


>gi|116617572|ref|YP_817943.1| superfamily II DNA/RNA helicase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096419|gb|ABJ61570.1| Superfamily II DNA and RNA helicase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 528

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 153/371 (41%), Positives = 232/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+   GYV+ TPIQ KTIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGRDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    LI+ PTRELA Q A+  +K G++  + V ++ GG     Q + L+
Sbjct: 61  EHIDLNNKNIQ---ALIVSPTRELAIQTAEELKKLGRDKRVDVQVVFGGADIRRQIQNLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LDH NR  + ++N+  LV+DEAD ML+MGF+  I+ I S  P  RQT
Sbjct: 118 SHPQILVGTPGRLLDHINRKTVKIDNVRTLVLDEADEMLNMGFLDDIEAIISKTPAERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+ NP+ I++     T + ++  FV    + ++K   + ++  
Sbjct: 178 LLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFV--RMRENEKFDTMTRIFD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   K  I+F   K+ V  L   LE +G+    +HG++ Q+ R ++L+ FK   I ++V
Sbjct: 236 VQ-APKLAIVFGRTKRRVEELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HV+NFD+P   E+Y+HRIGRTGRAG  G + T VA  ++ ++ A+
Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTFVAPNEMDYLRAV 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 EDLTKKRMTPL 365


>gi|315619798|gb|EFV00317.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 3431]
          Length = 449

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 158/367 (43%), Positives = 234/367 (63%), Gaps = 8/367 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--IL 63
           +GLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L   I 
Sbjct: 1   MGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLIT 60

Query: 64  EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  KL  G
Sbjct: 61  RQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGG 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  RQ LL
Sbjct: 121 VDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQS 241
           FSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL  ++  
Sbjct: 181 FSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLSHMI-G 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+++VA
Sbjct: 237 KGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +  IE
Sbjct: 297 TDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIE 356

Query: 362 KLIEKKV 368
           KL++K++
Sbjct: 357 KLLKKEI 363


>gi|90961336|ref|YP_535252.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
 gi|90820530|gb|ABD99169.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
          Length = 492

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 158/372 (42%), Positives = 234/372 (62%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ AV  +G+ + TPIQ +TIPLVL  +DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFGELGLDKSLLKAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+     +R  + +I+ PTRELA Q  +     GK     V ++ GG     Q K+LE
Sbjct: 61  QQLD---LDLRQIQAVIISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLE 117

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +L+ TPGR+LDH  RG + + +++ L++DEAD MLDMGF+  I+ I   VP  RQ
Sbjct: 118 QHTPHILVGTPGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E+ K+ E F+ NP+ +++     T + ++  FV T  +  +K  ++ +L+
Sbjct: 178 TLLFSATMPKEILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKT--KEFEKFDIMTRLI 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  I+F   K+ V  L   LE +G++   IHG++ Q+ RM +L  FK G + ++
Sbjct: 236 DVQ-APELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG HG + T V   ++ ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRV 354

Query: 360 IEKLIEKKVDWL 371
           IEKL +K++D L
Sbjct: 355 IEKLTKKRMDPL 366


>gi|301301069|ref|ZP_07207229.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851339|gb|EFK79063.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 492

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 158/372 (42%), Positives = 234/372 (62%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ AV  +G+ + TPIQ +TIPLVL  +DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFGELGLDKSLLKAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+     +R  + +I+ PTRELA Q  +     GK     V ++ GG     Q K+LE
Sbjct: 61  QQLD---LDLRQIQAVIISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLE 117

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +L+ TPGR+LDH  RG + + +++ L++DEAD MLDMGF+  I+ I   VP  RQ
Sbjct: 118 QHTPHILVGTPGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E+ K+ E F+ NP+ +++     T + ++  FV T  +  +K  ++ +L+
Sbjct: 178 TLLFSATMPKEILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKT--KEFEKFDIMTRLI 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  I+F   K+ V  L   LE +G++   IHG++ Q+ RM +L  FK G + ++
Sbjct: 236 DVQ-APELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG HG + T V   ++ ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRV 354

Query: 360 IEKLIEKKVDWL 371
           IEKL +K++D L
Sbjct: 355 IEKLTKKRMDPL 366


>gi|257081095|ref|ZP_05575456.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
 gi|256989125|gb|EEU76427.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
          Length = 513

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 158/384 (41%), Positives = 239/384 (62%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+P+++ AV  AG+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++   A  R+ + L++ PTRELA Q  +   + G++  + V  + GG     Q + L+
Sbjct: 61  NKID---ADNRVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  +E LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 DRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F++ P+ +++     TA+ I+  +V +  +  +K  ++ +LL 
Sbjct: 178 LLFSATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRS--KDFEKFDIMTRLLD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 236 VQ-TPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       ++ L PP EK
Sbjct: 355 ENLTKKR-------MTPLRPPTEK 371


>gi|255971301|ref|ZP_05421887.1| helicase [Enterococcus faecalis T1]
 gi|256617719|ref|ZP_05474565.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256761605|ref|ZP_05502185.1| helicase [Enterococcus faecalis T3]
 gi|256854305|ref|ZP_05559669.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
 gi|256957293|ref|ZP_05561464.1| helicase [Enterococcus faecalis DS5]
 gi|256959973|ref|ZP_05564144.1| helicase [Enterococcus faecalis Merz96]
 gi|256964332|ref|ZP_05568503.1| helicase [Enterococcus faecalis HIP11704]
 gi|257077733|ref|ZP_05572094.1| helicase [Enterococcus faecalis JH1]
 gi|257083763|ref|ZP_05578124.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|257086188|ref|ZP_05580549.1| helicase [Enterococcus faecalis D6]
 gi|257089260|ref|ZP_05583621.1| helicase [Enterococcus faecalis CH188]
 gi|257415413|ref|ZP_05592407.1| helicase [Enterococcus faecalis AR01/DG]
 gi|257418444|ref|ZP_05595438.1| helicase [Enterococcus faecalis T11]
 gi|257421095|ref|ZP_05598085.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294781261|ref|ZP_06746607.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300859873|ref|ZP_07105961.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
           TUSoD Ef11]
 gi|255962319|gb|EET94795.1| helicase [Enterococcus faecalis T1]
 gi|256597246|gb|EEU16422.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256682856|gb|EEU22551.1| helicase [Enterococcus faecalis T3]
 gi|256709865|gb|EEU24909.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
 gi|256947789|gb|EEU64421.1| helicase [Enterococcus faecalis DS5]
 gi|256950469|gb|EEU67101.1| helicase [Enterococcus faecalis Merz96]
 gi|256954828|gb|EEU71460.1| helicase [Enterococcus faecalis HIP11704]
 gi|256985763|gb|EEU73065.1| helicase [Enterococcus faecalis JH1]
 gi|256991793|gb|EEU79095.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|256994218|gb|EEU81520.1| helicase [Enterococcus faecalis D6]
 gi|256998072|gb|EEU84592.1| helicase [Enterococcus faecalis CH188]
 gi|257157241|gb|EEU87201.1| helicase [Enterococcus faecalis ARO1/DG]
 gi|257160272|gb|EEU90232.1| helicase [Enterococcus faecalis T11]
 gi|257162919|gb|EEU92879.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294451597|gb|EFG20053.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300850691|gb|EFK78440.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
           TUSoD Ef11]
 gi|323480025|gb|ADX79464.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis 62]
          Length = 515

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 158/384 (41%), Positives = 239/384 (62%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+P+++ AV  AG+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++   A  R+ + L++ PTRELA Q  +   + G++  + V  + GG     Q + L+
Sbjct: 61  NKID---ADNRVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  +E LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 DRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F++ P+ +++     TA+ I+  +V +  +  +K  ++ +LL 
Sbjct: 178 LLFSATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRS--KDFEKFDIMTRLLD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 236 VQ-TPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       ++ L PP EK
Sbjct: 355 ENLTKKR-------MTPLRPPTEK 371


>gi|255973920|ref|ZP_05424506.1| helicase [Enterococcus faecalis T2]
 gi|255966792|gb|EET97414.1| helicase [Enterococcus faecalis T2]
          Length = 515

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 158/384 (41%), Positives = 239/384 (62%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+P+++ AV  AG+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++   A  R+ + L++ PTRELA Q  +   + G++  + V  + GG     Q + L+
Sbjct: 61  NKID---ADNRVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  +E LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 DRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F++ P+ +++     TA+ I+  +V +  +  +K  ++ +LL 
Sbjct: 178 LLFSATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRS--KDFEKFDIMTRLLD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 236 VQ-TPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       ++ L PP EK
Sbjct: 355 ENLTKKR-------MTPLRPPTEK 371


>gi|229542534|ref|ZP_04431594.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
 gi|229326954|gb|EEN92629.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
          Length = 475

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 156/368 (42%), Positives = 234/368 (63%), Gaps = 10/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L LSP ++ AV   G+ + +PIQ  TIPL +Q  D+ G AQTGTGKTA+F +P++  
Sbjct: 4   FSELNLSPAILKAVKRMGFEEASPIQAATIPLTMQGKDIIGQAQTGTGKTAAFGIPLI-- 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            EK   R R  + +I+ PTRELA QV++   + G++  + V  + GG     Q + L+  
Sbjct: 62  -EKIDHRSRNIQGIIIAPTRELAIQVSEELYRIGQDSRVHVLAVYGGQDISRQIRALKNH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH +RG L ++++  LV+DEAD ML+MGFI  I+ I S VP  RQT+L
Sbjct: 121 PQIIVGTPGRILDHIHRGTLKLDHVHTLVLDEADEMLNMGFIDDIEAILSTVPKDRQTML 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL--Q 240
           FSATM D ++K++E F+ NP+ + V     T  +IE  +V    Q  +K  +L +LL  Q
Sbjct: 181 FSATMPDPIRKIAERFMNNPELVRVKAKEMTVPSIEQYYVK--VQEREKFDVLSRLLDVQ 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S D     I+F   K+ V  L ++L  +G+    IHG++ Q  R+ +L  FK+G I ++V
Sbjct: 239 SPDL---AIVFGRTKRRVDELANALNLRGYLAEGIHGDLSQAKRLSVLRKFKDGKIDVLV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAGR G A T V   ++ ++  +
Sbjct: 296 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGREGMAMTFVTPREMGYLKTV 355

Query: 361 EKLIEKKV 368
           E+  +K++
Sbjct: 356 EQTTKKRM 363


>gi|309786547|ref|ZP_07681170.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
           1617]
 gi|308925610|gb|EFP71094.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
           1617]
          Length = 449

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 158/367 (43%), Positives = 234/367 (63%), Gaps = 8/367 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--IL 63
           +GLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L   I 
Sbjct: 1   MGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLIT 60

Query: 64  EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  KL  G
Sbjct: 61  RQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGG 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  RQ LL
Sbjct: 121 VDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQS 241
           FSAT +D+++ ++E  L NP  IEV   ++ ++ + +H     +    +K  LL  ++  
Sbjct: 181 FSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLSHMI-G 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+++VA
Sbjct: 237 KGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +  IE
Sbjct: 297 TDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIE 356

Query: 362 KLIEKKV 368
           KL++K++
Sbjct: 357 KLLKKEI 363


>gi|330953563|gb|EGH53823.1| helicase [Pseudomonas syringae Cit 7]
          Length = 557

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 150/367 (40%), Positives = 234/367 (63%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPSK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P +RQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPESRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++PK +++ T + T   IE   +  +A   +K + +  LL+ 
Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 243 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKV 368
           ++  +KV
Sbjct: 362 RVTGQKV 368


>gi|33594923|ref|NP_882566.1| putative ATP-dependent RNA helicase [Bordetella parapertussis
           12822]
 gi|33564999|emb|CAE39946.1| putative ATP-dependent RNA helicase [Bordetella parapertussis]
          Length = 582

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 154/373 (41%), Positives = 231/373 (61%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL+P ++ A+ +AG+ +PT +Q   IP  +   D+   +QTG+GKTA+F+LP L
Sbjct: 37  MSFEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPAL 96

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNK 117
             +  + G   V + + L+L PTRELA QVAD    YG+N   L  A ++GG+P+ AQ K
Sbjct: 97  NRIAHQPGNKGVGV-QVLVLTPTRELALQVADATASYGRNLPGLRTATVVGGMPYGAQLK 155

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L R  DVL+ TPGR++DH   G++ +N +  LV+DEADRMLDMGFI  I+ I   +P  
Sbjct: 156 ALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPKE 215

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQ 236
           RQTLLFSAT+   + +++E  ++ P+RIE+         I    +  YA   + K  LL 
Sbjct: 216 RQTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKHANITQSLL--YADDAAHKMRLLD 273

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +L+    +   I+F   K+   +L   L  QGF+  A+HG+++QR R + L   + G +
Sbjct: 274 HVLRDA-RLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGQLQRGQL 332

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARG+D+  + H  NFD+P +AE+Y+HRIGRTGRAGR G+AFTL    +   
Sbjct: 333 RVLVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGQAFTLATHAERHK 392

Query: 357 IDAIEKLIEKKVD 369
           +  IE  I + ++
Sbjct: 393 VRRIEHYIGQSIN 405


>gi|319794896|ref|YP_004156536.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS]
 gi|315597359|gb|ADU38425.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
          Length = 605

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 155/373 (41%), Positives = 236/373 (63%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +L L+P ++ AV + GY  PTPIQ + IP VL+ HD+ G AQTGTGKTA+F LPML
Sbjct: 1   MNFDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L   R+          R L+L PTRELAAQV ++   YGK   L   ++ GG+    Q
Sbjct: 61  HKLTMSRSATNKFGGVGIRALVLTPTRELAAQVEESVRTYGKYLQLDSTVIFGGVGMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL++G D+L+ TPGR+LD   +G L ++ +++L++DEADRMLDMGFI  ++ I +LVP
Sbjct: 121 ISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE++ ++   L+NP+ I+V   ++T + I    V       KK ALL
Sbjct: 181 KEKQSLLFSATFSDEIRDLAATLLKNPQSIQVTPRNTTVQRITQ--VIHPVGRGKKKALL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             ++ +++     ++F   K    ++   L K G    A+HGN  Q +R + L+ FK G 
Sbjct: 239 AHII-NENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGD 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ +VA+D+AARG+DI ++ HV N+++PN +E+Y+HRIGRTGRAG  G+A + V  ++  
Sbjct: 298 IRALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCLDEEG 357

Query: 356 HIDAIEKLIEKKV 368
            +  IE+  ++ +
Sbjct: 358 FMQEIERFTKQTI 370


>gi|15836797|ref|NP_297485.1| ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
 gi|9104994|gb|AAF83005.1|AE003873_2 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
          Length = 446

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 162/372 (43%), Positives = 232/372 (62%), Gaps = 6/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LGL P ++ A+ + GY  PTPIQ + IPL L  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MNFETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVL 60

Query: 61  TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L    + V    PR L+L PTRELA QV D+   Y K   ++ A++ GG+    Q   
Sbjct: 61  QRLMAASSNVGAGKPRALVLTPTRELATQVYDSLRGYAKYQRVSSAVIYGGVGMGNQLDV 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-T 177
           L RG D+LI  PGR++DH  R  + ++ + ILV+DEADRMLDMGF+P I+ I   +P   
Sbjct: 121 LRRGVDLLIACPGRLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPRQN 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT  + +++++  F+  P+ + V + ++ AETI H         S+K  LL  
Sbjct: 181 RQTLLFSATFAEPIKQLALEFMCRPREVMVASHNTVAETITHRVHPV--DVSRKRELLLH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL +QD+ +  ++F   K     L   LEK G    AIHGN  Q  R++ L++FK G + 
Sbjct: 239 LL-AQDSREQTLVFVRTKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVT 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LV +ED K +
Sbjct: 298 VLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLL 357

Query: 358 DAIEKLIEKKVD 369
             I +L+++ +D
Sbjct: 358 RQIVRLLDRDMD 369


>gi|188581754|ref|YP_001925199.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
 gi|179345252|gb|ACB80664.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
          Length = 506

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 150/368 (40%), Positives = 232/368 (63%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D GL+  V+ A+ +AGYV PTPIQ + +P  ++  D+CGIAQTGTGKTA+F LP+L  
Sbjct: 4   FTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHR 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE  RA  R  R L+L PTRELA+Q+A++F  YG++   T  ++ GG+    Q + + 
Sbjct: 64  LSLENRRAPRRGCRVLVLSPTRELASQIAESFSDYGRHLPYTNTVVFGGVNINRQERAIA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGR++D  +R  L ++ +EILV+DEAD+MLD+GFI  ++ I  ++P  RQ+
Sbjct: 124 PGVDILVATPGRLIDLVDRRALTLDGVEILVLDEADQMLDLGFIHALKRIVKMLPARRQS 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   +  +++ +L NP ++ V   ++TAE ++   +  +     K ALL  +L+
Sbjct: 184 LFFSATMPKNIAGLADQYLTNPVQVAVTPVATTAERVDQQVI--FCHTGAKQALLNHVLR 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               ++  ++F   K     +   L+K G    AIHGN  Q  R + L+ F++G+ +++V
Sbjct: 242 D-PKIERVLVFTRTKHGADRVVRGLDKAGIVGAAIHGNKSQPQRERALAAFRDGSCRVLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV N+D+PN  E+Y+HRIGRT RAG  G A +    E+  ++  I
Sbjct: 301 ATDIAARGIDVEGVTHVVNYDLPNVPESYVHRIGRTARAGAEGMAISFCNDEERAYLLDI 360

Query: 361 EKLIEKKV 368
           E+   +KV
Sbjct: 361 ERTTRQKV 368


>gi|261379789|ref|ZP_05984362.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
           subflava NJ9703]
 gi|284797475|gb|EFC52822.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
           subflava NJ9703]
          Length = 463

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 170/440 (38%), Positives = 259/440 (58%), Gaps = 30/440 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+ D GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 4   FSSLGLGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 63

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 64  LKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDKQTA 123

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 124 DLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 183

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A  A   KK  LL++
Sbjct: 184 RQTLLFSATFSPPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDA--LKKRNLLER 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+     M   I+FC  K++V  +   L ++  +  +IHG+  Q+SR++ L+ FKEGT++
Sbjct: 242 LIVDLH-MNQVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEGTLR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ K + K  
Sbjct: 301 VLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMF 360

Query: 358 DAIEKLIEKKVD----------WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           ++I++L    ++          W   D    N    +    QHN +R        S   D
Sbjct: 361 ESIKELTGSDLNVERIEGFEPYWWGND----NQDEAEAQPVQHNDSR--------SRRED 408

Query: 408 RRKKNYSSQKSHIPLKESEK 427
           R K+N  + KS    K++E+
Sbjct: 409 RNKRNEYANKSDKSSKKAEE 428


>gi|110633776|ref|YP_673984.1| DEAD/DEAH box helicase-like [Mesorhizobium sp. BNC1]
 gi|110284760|gb|ABG62819.1| DEAD/DEAH box helicase-like protein [Chelativorans sp. BNC1]
          Length = 460

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 153/368 (41%), Positives = 230/368 (62%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADLG+S  ++ A   AG  +P PIQ + IP  L   D+ G+AQTG+GKTA+F LP+L+ 
Sbjct: 28  FADLGISETLLKAAAAAGMTEPKPIQKEAIPPFLAGSDILGVAQTGSGKTAAFSLPILSK 87

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R R  R LIL PTRELA Q+     +  K  +++ AL++GG+   +Q K++ 
Sbjct: 88  IIGLGTKRRPRTARALILVPTRELAVQIEKVVRELAKGAHVSTALVLGGVSRHSQIKRMA 147

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR+ D    G ++++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 148 QGVDVLIATPGRLTDLVRDGAVVLSETTWLVLDEADRMLDMGFINDVRRIAKATHPARQT 207

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E++ ++ + L+ P RIEV+   +TA  I    +   A+  +K  LL ++L 
Sbjct: 208 ALFSATMPREIEALASSLLKEPVRIEVSPQGTTAAEIRQSVI--MARTKQKRKLLSEML- 264

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + M   IIF   K     +   L+  GF    IHGN  Q +R + L++F+EG ++++V
Sbjct: 265 ADEKMAQVIIFSRTKHGADRVTKDLQHDGFQAAVIHGNKSQNARQRALNDFREGAVRILV 324

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+P + HV NFD+P+ AE+Y+HRIGRTGR G  G+A TL    ++  +  +
Sbjct: 325 ATDIAARGIDVPGISHVVNFDLPDEAESYVHRIGRTGRNGAEGEAITLCDPGEVSKLRQV 384

Query: 361 EKLIEKKV 368
           E++I  ++
Sbjct: 385 ERVIRNRL 392


>gi|213968691|ref|ZP_03396833.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
           pv. tomato T1]
 gi|213926624|gb|EEB60177.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
           pv. tomato T1]
          Length = 573

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 151/367 (41%), Positives = 234/367 (63%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 19  FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 79  IDPTK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 135

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 136 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 195

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++PK +++ T + T   IE   +  +A   +K + +  LL+ 
Sbjct: 196 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 254 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 313 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 372

Query: 362 KLIEKKV 368
           ++  +KV
Sbjct: 373 RVTGQKV 379


>gi|326316545|ref|YP_004234217.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323373381|gb|ADX45650.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 605

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 157/370 (42%), Positives = 237/370 (64%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AV + GY  PTPIQ + IP VL  HD+   AQTGTGKTA+F LPML
Sbjct: 1   MTFDELNLAPAILKAVHEQGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML 60

Query: 61  TIL-EKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L + G AR     R L+L PTRELAAQV +N   Y K+ ++   ++ GG+    Q  +
Sbjct: 61  HRLTQGGTARPAGGIRALVLTPTRELAAQVEENLRAYAKHLDVKSTVIFGGVGMNPQIDR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++RG D+L+ TPGR+LD   +G L ++ +EILV+DEADRMLDMGFI  ++ + +LVP  +
Sbjct: 121 IKRGVDILVATPGRLLDLQQQGFLDLSKVEILVLDEADRMLDMGFIHDVKKVLALVPRDK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+LLFSAT +DE+++++   L+NP+ I+V   ++T + I    V       KK  +L  +
Sbjct: 181 QSLLFSATFSDEIRELANTLLKNPQSIQVTPRNTTVQRITQ--VIHPVGRGKKKQVLLHI 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +Q  +     ++F   K    N+   L K G +  A+HGN  Q +R + L+ FK G I+ 
Sbjct: 239 IQEHN-WSQVLVFTRTKFGANNVAEFLTKNGVNAMALHGNKSQSARTQALAGFKSGDIRA 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI ++ HV N+++PN  E+Y+HRIGRTGRAG  G+A +LV  ++   + 
Sbjct: 298 LVATDIAARGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGASGEAVSLVCMDEEGFMM 357

Query: 359 AIEKLIEKKV 368
            IE+  ++++
Sbjct: 358 EIERFTKQEI 367


>gi|323497478|ref|ZP_08102496.1| putative ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
 gi|323317561|gb|EGA70554.1| putative ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
          Length = 426

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 165/408 (40%), Positives = 241/408 (59%), Gaps = 15/408 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA    SP++V A+ + GY K TP+Q K IP   + HD+   AQTGTGKTA+F LP++
Sbjct: 1   MSFASQNFSPEIVKALTECGYEKLTPVQQKAIPFARKGHDILANAQTGTGKTAAFALPIV 60

Query: 61  -TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             IL+  + R R   R +IL PTRELAAQ+A N + Y K   +    + GG    +Q K 
Sbjct: 61  QNILDNAKPRQRHQARAVILAPTRELAAQIATNIQDYTKYTEIKTVAIYGGAKMSSQQKA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G DVL+ TPGR+++H +   + + N+E LV DEADRMLDMGFI  I+NI S V    
Sbjct: 121 LEAGVDVLVATPGRLIEHMDLNNVSLVNLEFLVFDEADRMLDMGFISAIENIMSGVATKP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT + ++  ++   L+ PKR+ V   ++TAET+ H  V    +  +K  LL +L
Sbjct: 181 QTMLFSATFSAQMNTLATKILRQPKRVSVARENATAETVAH--VVYPVEQERKRELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F N K+    L   L+  G      HG+  Q +R + L  FK G  ++
Sbjct: 239 I-GRKNWQQVLVFVNYKETANELVKELKLDGIKAVLCHGDKAQSARRRALDEFKSGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+D+AARGLDI ++ HV NFD+P  AE+Y+HRIGRTGRAG+ G A + V +++   + 
Sbjct: 298 MIATDVAARGLDIQNLPHVVNFDMPFLAEDYVHRIGRTGRAGQRGNAVSFVNRDEELTLQ 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPP-----LEKIDIA---QHNHARKNNP 398
            +E LI +++     +L    P      LEK+      ++   R+NNP
Sbjct: 358 QVEMLIGQRI--YRKELEGYEPKNRDALLEKMHSKPAFKNRKTRQNNP 403


>gi|160875166|ref|YP_001554482.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|160860688|gb|ABX49222.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315267360|gb|ADT94213.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 467

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 154/363 (42%), Positives = 229/363 (63%), Gaps = 4/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ A+ + GY +PTPIQ K IP++ +  ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSDPILRAITELGYSQPTPIQEKAIPVIFKGKNLLAGAQTGTGKTASFVLPIL 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +  +  + R +  R LIL PTRELA QV DN  KY K   LT   + GG+    Q ++L
Sbjct: 61  QMFADMPKIRAKRVRALILTPTRELAVQVEDNIAKYAKYLPLTSMAMYGGVDAAPQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + I +LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDEISVLVLDEADRMLDMGFIEDINKIIERLPTERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++ +++  ++NP  IE+   S+ A  I+   +       KK ALL +L+
Sbjct: 181 NLLFSATLSKQVRFLAKTAVENPVEIEIARDSANAPQIDQWLITV--DKDKKSALLSKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  +IF   K+    L   LEK+G +  AIH    Q  R ++L +FK G ++ +
Sbjct: 239 TEQ-AWEQALIFIQTKQGAAKLVSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGKLRFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +A+RG+DI  +  V N+D+P+ A++YIHRIGRTGRAG  G+A + V+K+D +++ A
Sbjct: 298 VATGVASRGIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGACGEAISFVSKDDFRNLCA 357

Query: 360 IEK 362
           IE+
Sbjct: 358 IER 360


>gi|153000529|ref|YP_001366210.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151365147|gb|ABS08147.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 467

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 155/363 (42%), Positives = 229/363 (63%), Gaps = 4/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ A+ + GY +PTPIQ K IP++L+  ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSNPILRAITELGYSQPTPIQEKAIPVILKGKNLLAGAQTGTGKTASFVLPIL 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +  +  + R +  R LIL PTRELA QV DN  KY K   LT   + GG+    Q + L
Sbjct: 61  QMFADMPKIRAKRVRALILTPTRELAVQVEDNIAKYAKYLPLTSMAMYGGVDAAPQKQSL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + I +LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDEISVLVLDEADRMLDMGFIEDINKIIERLPTERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++ +++  ++NP  IE+   S+ A  I+   +       KK ALL +L+
Sbjct: 181 NLLFSATLSKQVRFLAKTAVENPVEIEIARDSANAPQIDQWLITV--DKDKKSALLSKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  +IF   K+    L   LEK+G +  AIH    Q  R ++L +FK G ++ +
Sbjct: 239 TEQ-AWEQALIFIQTKQGAAKLVSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGKLRFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +A+RG+DI  +  V N+D+P+ A++YIHRIGRTGRAG  G+A + V+K+D +++ A
Sbjct: 298 VATGVASRGIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGACGEAISFVSKDDFRNLCA 357

Query: 360 IEK 362
           IE+
Sbjct: 358 IER 360


>gi|110680325|ref|YP_683332.1| putative ATP-dependent RNA helicase, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456441|gb|ABG32646.1| putative ATP-dependent RNA helicase, putative [Roseobacter
           denitrificans OCh 114]
          Length = 433

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 160/390 (41%), Positives = 242/390 (62%), Gaps = 15/390 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  + L P++V  +   G   PTPIQ + IP  +   DV G+AQTGTGKTA+F +P++ 
Sbjct: 3   DFEMMNLPPELVARLGRMGLKDPTPIQKQAIPHAMNGRDVMGLAQTGTGKTAAFGVPLVA 62

Query: 62  -ILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +LE  GR   +  R L+L PTRELA Q++ N   + +N  + VA+++GG     Q K+L
Sbjct: 63  QMLELDGRPAPKSVRGLVLAPTRELATQISVNLRSFAENTKVKVAMVVGGQSINNQIKRL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+L+ TPGR+LD  +R  + ++    LV+DEAD+MLDMGFI  ++ I S++P  RQ
Sbjct: 123 ERGVDLLVATPGRLLDLMDRRAVRLDEAVFLVLDEADQMLDMGFIHDLRKIASVIPKERQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQ 237
           T+LFSATM  ++ +++ ++L++P R+EV+ P   A+ +  E  F+A     S+K  LL +
Sbjct: 183 TMLFSATMPKQMNELANSYLRSPIRVEVSPPGKAADKVTQEVHFIAK----SEKPGLLIE 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L      +  ++F   K     L  SL K G++  +IHGN  Q  R + ++ FK G I+
Sbjct: 239 MLDKHRD-ERALVFGRTKHGSEKLMKSLVKAGYAAGSIHGNKSQGQRDRAIAAFKSGEIK 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIPDV HV+N+D+PN  +NY+HRIGRT RAG+ G A    A +++  +
Sbjct: 298 VLVATDVAARGLDIPDVKHVYNYDLPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGEL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
            AI+K +   +   +G       P E  DI
Sbjct: 358 KAIQKTMGISIPVGSGR------PWEAADI 381


>gi|119898413|ref|YP_933626.1| ATP-dependent RNA helicase [Azoarcus sp. BH72]
 gi|119670826|emb|CAL94739.1| ATP-dependent RNA helicase [Azoarcus sp. BH72]
          Length = 650

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 149/368 (40%), Positives = 223/368 (60%), Gaps = 6/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ A+ D GY  P+PIQ   IP +L  HD+ G AQTGTGKTA+F LPML  
Sbjct: 7   FADLALPAPLLQALADVGYETPSPIQAACIPHLLAGHDILGEAQTGTGKTAAFALPMLAR 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+      R P+ L+L PTRELA QVA+ F+KY  +  +  V  L GG     Q ++L R
Sbjct: 67  LDLAD---RRPQVLVLTPTRELAIQVAEAFQKYAHHLRDFHVLPLYGGQSMVVQLRQLSR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  RG L ++ +  LV+DEAD ML MGFI  ++ I    P  RQT 
Sbjct: 124 GAQIIVGTPGRVMDHLERGSLKLDTLSGLVLDEADEMLRMGFIEDVEWILEHTPSGRQTA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++V+   L+ PK +++   +ST   I   +     +   K   L ++L +
Sbjct: 184 LFSATMPDAIRRVAHQHLREPKEVKIRAATSTVSAISQRY--WLVRGVDKLDALTRILDA 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++ +   I+F   K     L   LE +G++  A++G++ Q  R +++   K G++ ++VA
Sbjct: 242 EEKLDAAIVFVRTKTATTELADKLEARGYAAAALNGDMTQGLRERVIEQLKNGSLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+P + HV N+D+P   E Y+HRIGRTGRAGR G A   VA  + + + AIE
Sbjct: 302 TDVAARGIDVPRISHVINYDIPYDTEAYVHRIGRTGRAGREGSAILFVAPRESRMLKAIE 361

Query: 362 KLIEKKVD 369
           +   + ++
Sbjct: 362 RATRQPIE 369


>gi|228989414|ref|ZP_04149403.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides
           DSM 12442]
 gi|228770361|gb|EEM18936.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides
           DSM 12442]
          Length = 528

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 156/370 (42%), Positives = 233/370 (62%), Gaps = 6/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  
Sbjct: 4   FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    +++ PTRELA QV +   K GK+  + +  + GG     Q + L++ 
Sbjct: 64  VDTHKESVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLL
Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+  P+ I+V     T   I+  ++    Q  KK  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA+
Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIEQ 357

Query: 363 LIEKKVDWLN 372
             ++K+D +N
Sbjct: 358 TTKRKIDRMN 367


>gi|228995609|ref|ZP_04155275.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides
           Rock3-17]
 gi|228764181|gb|EEM13062.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides
           Rock3-17]
          Length = 536

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 156/370 (42%), Positives = 233/370 (62%), Gaps = 6/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  
Sbjct: 4   FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    +++ PTRELA QV +   K GK+  + +  + GG     Q + L++ 
Sbjct: 64  VDTHKESVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLL
Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+  P+ I+V     T   I+  ++    Q  KK  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA+
Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIEQ 357

Query: 363 LIEKKVDWLN 372
             ++K+D +N
Sbjct: 358 TTKRKIDRMN 367


>gi|254445656|ref|ZP_05059132.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198259964|gb|EDY84272.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 426

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 158/370 (42%), Positives = 229/370 (61%), Gaps = 8/370 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  A+ + G+ KPTPIQ + IP+VL+  D+ G AQTGTGKTA+F LP+L
Sbjct: 28  MPFSGLGLSEPINKALSELGFEKPTPIQEQAIPIVLEGRDLIGSAQTGTGKTAAFGLPIL 87

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +  G+      + LILEPTRELAAQV +    + KN  + + L+ GG+ +  Q K +E
Sbjct: 88  QRIVPGKPF----QCLILEPTRELAAQVEEALTVFAKNLGIKIGLIYGGVKYGGQLKMME 143

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT-SLVPFTRQ 179
            GA++++ TPGR+LDH  +G L +  ++ LV+DE DRMLDMGF+P ++ I  +     RQ
Sbjct: 144 GGAEIIVATPGRLLDHLGQGNLSLKQMDYLVLDEVDRMLDMGFLPDVKRIVQNYCSAERQ 203

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLF+ATM   ++ ++   L+NP  +E+    S AET+ H F     +   K  L     
Sbjct: 204 TLLFTATMPAAIKTLTGWVLKNPAVVEIGKNRSAAETVSHAFYPVVERQKYKLLLELLER 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +++   +IF   K N   +   LE+    V A+H +  Q  R   L  FK+G  +++
Sbjct: 264 THYESV---LIFTRTKFNADMITRRLERLDHKVAALHSDRSQSERTAALKGFKDGRYEVL 320

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV N+DVP  AE+Y+HRIGRTGRA + G AFTL+ ++++K+  A
Sbjct: 321 VATDIAARGLDIAGVTHVINYDVPLHAEDYVHRIGRTGRASKEGDAFTLLTEDEVKNAAA 380

Query: 360 IEKLIEKKVD 369
           IE  I KKV+
Sbjct: 381 IEHFIGKKVE 390


>gi|257870943|ref|ZP_05650596.1| helicase [Enterococcus gallinarum EG2]
 gi|257805107|gb|EEV33929.1| helicase [Enterococcus gallinarum EG2]
          Length = 502

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 158/384 (41%), Positives = 238/384 (61%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS +++ +V  AG+ + TPIQ  TIPL LQ  DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKDLELSNELLTSVERAGFEEATPIQEATIPLALQGRDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++    +++    L++ PTRELA Q  +   + GK+  + V  + GG     Q ++L+
Sbjct: 61  EKIDPANHQLQ---GLVIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIRQLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  +E LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F++NP+ +++     TA+ I+  +V +  +  +K  ++ +LL 
Sbjct: 178 LLFSATMPPAIKSIGVKFMKNPEHVQIKAKEMTADLIDQYYVRS--KDYEKFDIMTRLLD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 236 VQ-TPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGISVTFVTPNEMSYLHVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       +S + PP EK
Sbjct: 355 ENLTKKR-------MSPMRPPTEK 371


>gi|332969729|gb|EGK08743.1| ATP-dependent RNA helicase RhlE [Kingella kingae ATCC 23330]
          Length = 484

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 157/395 (39%), Positives = 246/395 (62%), Gaps = 10/395 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+ + GY  PTPIQ+  IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 32  FSQLGLGQEIVSALSEQGYETPTPIQLAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 91

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 92  LKRYANASTSPAMHPMRMLVLTPTRELADQIDQNTKSYIKNLPLRHTVLFGGVSMDKQTA 151

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGF+  I+ I  L+P +
Sbjct: 152 DLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFVDEIRQIMRLLPKS 211

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT   +++K++++F+  P+ IEV   ++T   +E   +A  A   K+  LL++
Sbjct: 212 RQTLLFSATFAPDIRKLAQDFMHLPETIEVAAQNTTNANVEQHVIAVDAHRKKE--LLER 269

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+   + M   I+FC  K++   +   L ++G S  AIHG+  Q++R+++LS FK G ++
Sbjct: 270 LIVDLN-MPQVIVFCKTKQSAEQVARDLLRRGLSANAIHGDKSQQTRLEVLSQFKSGELR 328

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P +AE+Y+HRIGRTGRAG  G A +++ + + K  
Sbjct: 329 VLVATDVAARGLDIAELPFVINYELPVQAEDYVHRIGRTGRAGAEGVAISMMDETEQKMY 388

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
            +I++LI  ++      +    P  E++  A H  
Sbjct: 389 ASIQELIGAQLPV--SRIEGFEPRWEQVQAALHEQ 421


>gi|163851993|ref|YP_001640036.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|240139120|ref|YP_002963595.1| RNA helicase [Methylobacterium extorquens AM1]
 gi|163663598|gb|ABY30965.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           PA1]
 gi|240009092|gb|ACS40318.1| RNA helicase [Methylobacterium extorquens AM1]
          Length = 510

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 155/393 (39%), Positives = 240/393 (61%), Gaps = 8/393 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D GL+  V+ A+ +AGYV PTPIQ + +P  ++  D+CGIAQTGTGKTA+F LP+L  
Sbjct: 4   FTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHR 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  RA  R  R L+L PTRELA+Q+AD+F  YG++   T  ++ GG+    Q + + 
Sbjct: 64  LSLDSRRAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQERAIA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGR++D  +R  L +  +EILV+DEAD+MLD+GFI  ++ I  ++P  RQ+
Sbjct: 124 PGVDILVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAKRQS 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   +  +++ +L NP ++ V   ++TAE ++   +  +     K ALL  +L+
Sbjct: 184 LFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVI--FCHTGAKQALLNHVLR 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               ++  ++F   K     +   L+K      AIHGN  Q  R + L+ F++G+ +++V
Sbjct: 242 D-PKIERVLVFTRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSCRVLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV N+D+PN  E+Y+HRIGRT RAG  G+A +    E+  ++  I
Sbjct: 301 ATDIAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRDI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           E+   +K+  + G      PP  +   AQ N A
Sbjct: 361 ERTTRQKIP-VGGFPEGFVPPTRQ--EAQDNAA 390


>gi|238897524|ref|YP_002923203.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           protein [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465281|gb|ACQ67055.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           protein [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 414

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 160/371 (43%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV +  Y  PTPIQ + IPL+L + D+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFHSLGLNADILRAVSEHNYSAPTPIQRQAIPLILAKRDLMASAQTGTGKTAAFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L +  A V   R  R LIL PTRELAAQ+A N   Y +   L    + GG+    Q  
Sbjct: 61  QLLSQNTALVKGRRQIRALILTPTRELAAQIAQNVSDYSQYLQLRSLAVFGGVSINPQTM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+LI TPGR+LD  ++  L ++ IEILV+DEADRMLDMGFI  I+ I + +P  
Sbjct: 121 KLRGGVDILIATPGRLLDLEHQNALALSQIEILVLDEADRMLDMGFIHDIRRILAKLPKK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+LLFSAT ++E++ +S   L +P  +EV   ++TA+ I       +   ++K ALL  
Sbjct: 181 RQSLLFSATFSNEIKSLSTKLLTHPAFVEVAPCNTTAQQISQYV--HFVDKNRKRALLSH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FKEG I 
Sbjct: 239 MI-GRGNWQQVLVFNRTKHGANHLSEQLNKDGITAAAIHGNKSQGARTRALADFKEGKIT 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + +V N+D+P+  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPYVVNYDLPHIPEDYVHRIGRTGRAQHAGEAISLVCVDEDKLL 357

Query: 358 DAIEKLIEKKV 368
             IE+L+++++
Sbjct: 358 KDIERLLKREI 368


>gi|307545782|ref|YP_003898261.1| ATP-dependent RNA helicase DeaD [Halomonas elongata DSM 2581]
 gi|307217806|emb|CBV43076.1| K05592 ATP-dependent RNA helicase DeaD [Halomonas elongata DSM
           2581]
          Length = 555

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 151/368 (41%), Positives = 225/368 (61%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L P V+ AV   GY  P+PIQ +TIP +L+  D+ G AQTGTGKTA+F LP+L+ 
Sbjct: 11  FGDLALLPAVLSAVETLGYETPSPIQAQTIPALLEGRDMLGQAQTGTGKTAAFALPILSR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           LE  R   R P+ L+L PTRELA QVA +F KYG+N   L VA+L GG+ +  Q + L R
Sbjct: 71  LELDR---REPQVLVLAPTRELAQQVAASFSKYGQNLKGLEVAILCGGMEYRDQMQALRR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH +RG L +  +  LV+DEAD ML MGFI  ++ + +  P   Q +
Sbjct: 128 GAQVVVGTPGRIIDHLDRGSLKLGGLSALVLDEADEMLRMGFIDDVKRVVADTPVDAQRV 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT+  E++++   +L  P ++ + + +S+ + IE   V        K   L ++L+ 
Sbjct: 188 FFSATLPTEIERIVNQYLVEPVKVTIESRASSGDNIEQRRVRIDG--GAKLEALARILEV 245

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   I+F   +     L   L  +G +V ++ G++DQ  R + ++  K G I +++A
Sbjct: 246 E-PVDAAIVFVRTRAACTTLMEQLSARGLNVASLSGDLDQSLRERTITRLKRGKIDVLIA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HV N+D+P  AE Y HRIGRTGRAGR G A T     + + +  +E
Sbjct: 305 TDVAARGLDVPRITHVINYDLPQDAEAYTHRIGRTGRAGRAGVAITFAGNREGRKVGWLE 364

Query: 362 KLIEKKVD 369
           +   +K+D
Sbjct: 365 RATGRKMD 372


>gi|70731602|ref|YP_261343.1| DEAD-box ATP dependent DNA helicase [Pseudomonas fluorescens Pf-5]
 gi|68345901|gb|AAY93507.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           fluorescens Pf-5]
          Length = 557

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 150/367 (40%), Positives = 234/367 (63%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPSK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++PK +++ + + T   IE   +  +A   +K + +  LL+ 
Sbjct: 185 LFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 243 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKV 368
           ++  +KV
Sbjct: 362 RVTGQKV 368


>gi|229083524|ref|ZP_04215862.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44]
 gi|228699778|gb|EEL52425.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44]
          Length = 527

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 156/371 (42%), Positives = 233/371 (62%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  
Sbjct: 4   FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    +++ PTRELA QV +   K GK+  + +  + GG     Q + L++ 
Sbjct: 64  VDTHKESVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLL
Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+  P+ I+V     T   I+  ++    Q  KK  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA+
Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357

Query: 363 LIEKKVDWLNG 373
             ++K+D +N 
Sbjct: 358 TTKRKMDRMNA 368


>gi|296135178|ref|YP_003642420.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
 gi|295795300|gb|ADG30090.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
          Length = 488

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 169/407 (41%), Positives = 237/407 (58%), Gaps = 9/407 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L  +++ AV D GY K TPIQ K IPL+L   D+ G AQTGTGKTA+F LP+L  
Sbjct: 17  FSDLALDARILRAVSDMGYEKLTPIQAKAIPLLLDGRDIMGAAQTGTGKTAAFSLPILQQ 76

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L    +    P     R L+L PTRELA QV  N + Y K+  L  A + GG+    Q  
Sbjct: 77  LLPLASTSVSPARHPVRALMLAPTRELADQVYTNLKAYAKHTPLRCACVFGGMDMAPQKA 136

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G D+L+ TPGR+LDH     + +  ++ +V+DEADRMLD+GF+P +Q I   +P  
Sbjct: 137 ELRTGVDLLVATPGRLLDHLEAKTVNLGQVQFVVLDEADRMLDIGFLPDLQRILGFLPKQ 196

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R TLLFSAT + E++++++++LQNP  +EV  P++TA  +E        +   K A L Q
Sbjct: 197 RTTLLFSATFSTEIKRLAQSYLQNPLLVEVARPNATATNVEQRVY--QVEEDDKRATLVQ 254

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+  + +   I+F N +     L   LE+ G    A+HG+  Q  R+  L  FK G IQ
Sbjct: 255 LLR-DNPLPQVIVFVNSRLGAGRLTRLLERDGIKAAAMHGDKSQAERLTTLEAFKRGEIQ 313

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V N+DVP  AE+Y+HRIGRTGRAG  G A TL    D + +
Sbjct: 314 ALVATDVAARGLDIAELPGVVNYDVPFSAEDYVHRIGRTGRAGASGLAITLATARDARSL 373

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKID-IAQHNHARKNNPIPQKS 403
             IEKLI+++ +     L     P    D   +H  AR    +P  +
Sbjct: 374 ADIEKLIKRQFEKQTVSLERAPRPRRDADETREHRIARAPRALPSDT 420


>gi|167630436|ref|YP_001680935.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
 gi|167593176|gb|ABZ84924.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
          Length = 540

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 154/382 (40%), Positives = 237/382 (62%), Gaps = 8/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ LSPKV  A+ D G+ +P+PIQ K IP+++Q  D+ G AQTGTGKTA+F +PM   
Sbjct: 20  FGEIELSPKVAKAIFDMGFEEPSPIQAKAIPVIMQGKDLIGQAQTGTGKTATFGIPMAET 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     RV+    L+L PTRELA QVA    K G+  +L    + GG   + Q + L  G
Sbjct: 80  LNPRDGRVQ---ALVLCPTRELAIQVAQEISKIGRQNDLKALPVYGGQSIDRQIRALRYG 136

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGRILDH +R  L +NN+ ++V+DEAD MLDMGF+  I+ I    P  RQTLL
Sbjct: 137 VQVVIGTPGRILDHLSRKTLRLNNVRMVVLDEADEMLDMGFVEDIEAILKETPEERQTLL 196

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +Q+++  +++ P+ + ++    T   IE  +     + S+K   L ++L  +
Sbjct: 197 FSATMPGPIQQLARQYMKEPEFVTISRDKLTVPLIEQVYYE--CKESQKVDALCRILDME 254

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           + + + IIFC  K+ V  L  +LE +G+    +HG++ Q  R +++  F++G  +L++A+
Sbjct: 255 E-IGSSIIFCRTKRGVDELVAALETRGYFAEGLHGDLTQAQRDRVMKKFRDGKAELLIAT 313

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+ +V HV N+D+P   E+Y+HRIGRTGRAGR G A TL+   + + +  IE+
Sbjct: 314 DVAARGLDVENVTHVINYDIPQDPESYVHRIGRTGRAGRKGIAITLINYREYRQLKLIER 373

Query: 363 LIEKKVDWLNGDLSSLNPPLEK 384
           + + ++     DL S+   +E+
Sbjct: 374 VTKARIQ--RRDLPSMADIVER 393


>gi|55821544|ref|YP_139986.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55737529|gb|AAV61171.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
          Length = 528

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 155/371 (41%), Positives = 232/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  +  AV+ AG+ +P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +K        + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L 
Sbjct: 61  ---DKIHTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +NNIE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T   ++  F+    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R++I+ +FK G I ++V
Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLGII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|167628011|ref|YP_001678511.1| ATP-dependent RNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167598012|gb|ABZ88010.1| ATP-dependent RNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 445

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 155/365 (42%), Positives = 234/365 (64%), Gaps = 4/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+P +  A+   GY KPTPIQ K IPLVL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MQFSDLGLNPLICSALEKKGYTKPTPIQAKAIPLVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVVFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  L  +++   V+DEADRMLDMGFI  ++ I  L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQNALKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E+  ++  FL +P+ +  +  ++T + I    + T  + +K  AL+  L+
Sbjct: 181 TLMFSATFSPEITSLANEFLDSPQSVSADVVNTTVKKITQK-IYTLDKSTKINALI-SLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + QD +   ++F   K     +   L   G +  AIHGN  Q +R K L++FK   I ++
Sbjct: 239 KDQD-LHQVLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFKSKDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+PN AE+Y+HRIGRTGRAG+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQDGLAISLVSADEVESLSN 357

Query: 360 IEKLI 364
           IE LI
Sbjct: 358 IEHLI 362


>gi|326385724|ref|ZP_08207353.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209703|gb|EGD60491.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 487

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 170/440 (38%), Positives = 247/440 (56%), Gaps = 23/440 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL+  ++ A+   GY  PTPIQ ++IP +L+  D+ GIAQTGTGKTA+F LP L  
Sbjct: 4   FTELGLAEPILRALATKGYNDPTPIQRQSIPALLEGRDLLGIAQTGTGKTAAFALPSLHR 63

Query: 63  LE-----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L      K  A  RM   L+L PTRELAAQ+A+N   Y +N NL V  + GG+P   Q K
Sbjct: 64  LAADPKPKKPASCRM---LVLSPTRELAAQIAENMRGYARNLNLQVDCVFGGVPIGKQAK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G D+L+ TPGR+LD  +   L +  +EI V+DEAD+M+D+GFI  ++ + +L+P  
Sbjct: 121 RLVPGTDILVATPGRLLDLIDSRALTLGRVEIFVLDEADQMMDLGFIHSLKRVAALLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+L FSATM   ++ +   F+ NP R+EV   S+TAE +E  +V    Q  K+  L  +
Sbjct: 181 RQSLFFSATMPKSIEDLGRQFIHNPVRVEVAPQSTTAERVEQ-YVTFLNQMEKQALLTLR 239

Query: 238 L--LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +  + +  ++  GI+F   K     +   L   G    AIHGN  Q  R   L  F++G+
Sbjct: 240 IRAMLADKSLDRGIVFTRTKHGADRVARHLGVAGIEARAIHGNKTQAQRTAALEAFRQGS 299

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+D+AARG+D+  V HVFNF++PN  E Y+HRIGRT RAG  G A +  A ++  
Sbjct: 300 CPILVATDIAARGIDVSGVSHVFNFELPNVPEQYVHRIGRTARAGADGVAISFCAPDEKP 359

Query: 356 HIDAIEKLIEKKV-------DWLNGDLSSLNPPL----EKIDIAQHNHARKNNPIPQKST 404
           ++  IE+L   K        D+L        PP     E    A+H+  R+N P      
Sbjct: 360 YLRDIERLTGVKPTPMPLPDDFLAEAARLPTPPRRPAQENEGGARHD-GRRNGPGRGDRP 418

Query: 405 GFDRRKKNYSSQKSHIPLKE 424
             DR + + S      P ++
Sbjct: 419 QGDRARSDRSQGDRQRPRRD 438


>gi|332978670|gb|EGK15368.1| ATP-dependent RNA helicase RhlE [Psychrobacter sp. 1501(2011)]
          Length = 519

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 148/365 (40%), Positives = 235/365 (64%), Gaps = 6/365 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L+P+++ A+  +GY  PTPIQ ++IP  L   D+   AQTG+GKTA+FVLPML  
Sbjct: 42  FVDLDLAPELLSALTSSGYEHPTPIQAQSIPPALAGRDLLLSAQTGSGKTAAFVLPMLDK 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121
           + + +A  ++  T+IL PTRELA QV+D+  +Y  K  N+    L+GG P+  Q + L +
Sbjct: 102 IIRDKATNKVVHTVILTPTRELANQVSDSVRQYSSKTRNIFSVPLVGGAPYGGQIRALNK 161

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR +DH N G++ ++ ++IL++DEADRMLDMGF   I+ + S  P +RQT+
Sbjct: 162 GVQIIIATPGRFIDHMNSGRIDLSELDILILDEADRMLDMGFADDIEKVMSAAPKSRQTI 221

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT    + K++ +F  NP+RI++   + T    E  + A    ++ K  +L  LL  
Sbjct: 222 MCSATWDGPVGKIAASFTNNPERIDIK--AETKHIDESVYYAD--DFNHKNRILDHLLTQ 277

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D +   IIF   K++   L  SL++QG     +HG++ Q  R +I+++ K G I ++VA
Sbjct: 278 KD-VNQAIIFAATKRSCETLAKSLKEQGHKASFLHGDLPQAKRTRIINDVKAGKISILVA 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+  + HVFN+D+P + E+Y+HRIGR+GRAGR G A  + + +D   +DAI 
Sbjct: 337 TDVAARGIDVSGITHVFNYDLPRQTEDYVHRIGRSGRAGRTGIAINICSIDDRPQLDAIN 396

Query: 362 KLIEK 366
           + +++
Sbjct: 397 RYLKR 401


>gi|167032455|ref|YP_001667686.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida GB-1]
 gi|166858943|gb|ABY97350.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 560

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 148/367 (40%), Positives = 234/367 (63%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L+P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ LIL PTRELA QVA  FE Y K    + V  + GG P   Q + +  
Sbjct: 68  IDVSK---REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + +++ ++ LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L+ PK +++ T + T   IE   +  +A   +K   + +LL+ 
Sbjct: 185 LFSATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHA--DQKIPAVLRLLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++     I F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 243 EE-FDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKV 368
           ++  +KV
Sbjct: 362 RVTGQKV 368


>gi|149189303|ref|ZP_01867589.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1]
 gi|148836862|gb|EDL53813.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1]
          Length = 431

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 157/370 (42%), Positives = 232/370 (62%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G S ++V A+ + GY K TP+Q + IP   + HD+   AQTGTGKTA+F LP++
Sbjct: 1   MSFLSQGFSSEIVQALTECGYEKLTPVQQQAIPHARRGHDILAHAQTGTGKTAAFSLPII 60

Query: 61  T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             I++  +AR R   R LIL PTREL  Q+A+N E Y +  +++VA + GG    +Q +K
Sbjct: 61  QQIVDTPKARTRGAVRALILAPTRELVDQIANNIESYTQYVDVSVAAVFGGAKMSSQERK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+++H   G + + N+E LV DEADRMLDMGFI  I+ I S V    
Sbjct: 121 LEAGVDILVATPGRLIEHLELGNVKLANLEFLVFDEADRMLDMGFISAIRTIMSSVNSQP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT + ++  ++++ L+ PKRI VN  +STA+T+ H  V       +K  LL +L
Sbjct: 181 QTMLFSATSSPQMNALAQDLLRKPKRIIVNAENSTADTVAH--VVYPVDEDRKLELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F N K+    +   L+  G      HG+  Q SR + L  FK G  ++
Sbjct: 239 I-GRKNWQQVLVFVNYKETANEVVKELKLDGIKAVLCHGDKAQSSRRRALEEFKTGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+++AARGLDI  + HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+   + 
Sbjct: 298 MVATEVAARGLDIQGLPHVVNYDMPFLAEDYVHRIGRTGRAGQQGHAVSFVSREEELTLV 357

Query: 359 AIEKLIEKKV 368
            IE LI+ ++
Sbjct: 358 QIENLIQHRI 367


>gi|218530745|ref|YP_002421561.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4]
 gi|218523048|gb|ACK83633.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 510

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 148/368 (40%), Positives = 231/368 (62%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D GL+  V+ A+ +AGYV PTPIQ + +P  ++  D+CGIAQTGTGKTA+F LP+L  
Sbjct: 4   FTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHR 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  RA  R  R L+L PTRELA+Q+AD+F  YG++   T  ++ GG+    Q + + 
Sbjct: 64  LSLDSRRAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQERAIA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGR++D  +R  L +  +EILV+DEAD+MLD+GFI  ++ I  ++P  RQ+
Sbjct: 124 PGVDILVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAKRQS 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   +  +++ +L NP ++ V   ++TAE ++   +  +     K ALL  +L+
Sbjct: 184 LFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVI--FCHTGAKQALLNHVLR 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               ++  ++F   K     +   L+K      AIHGN  Q  R + L+ F++G+ +++V
Sbjct: 242 D-PKIERVLVFTRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSCRVLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV N+D+PN  E+Y+HRIGRT RAG  G+A +    E+  ++  I
Sbjct: 301 ATDIAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRDI 360

Query: 361 EKLIEKKV 368
           E+   +K+
Sbjct: 361 ERTTRQKI 368


>gi|157962845|ref|YP_001502879.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157847845|gb|ABV88344.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 414

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 162/408 (39%), Positives = 243/408 (59%), Gaps = 17/408 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ L L  K+   +   GY +PT IQ + IP++L   D+   AQTGTGKTA+F LP+L
Sbjct: 3   VSFSSLPLGDKLQRVLAQKGYQQPTAIQAEAIPVILSGQDIMASAQTGTGKTAAFTLPLL 62

Query: 61  TILEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L    A      R+P  LIL PTRELA QV  N  +Y  N ++   ++ GG+  +AQ 
Sbjct: 63  QRLLDRSAEDCLTSRLPTALILVPTRELAVQVNGNVSQYAVNTDIASVVIYGGVSIDAQA 122

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            KL  G D+++ TPGR+LDH  RG L +++I+ LV DEADRMLDMGF+  I  I + +P 
Sbjct: 123 TKLAAGCDIIVATPGRLLDHLRRGSLNLSSIDYLVFDEADRMLDMGFMDEISAILTRLPA 182

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT LFSAT +  +  +S+  L  P RIEV+  +S A+++E    A      +K  L+ 
Sbjct: 183 KRQTSLFSATFSTAIYDLSKKLLHKPARIEVDKANSAADSVEQIVYAV--DSDRKTELIC 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  D     +IF  +K+    +   +   G    A HG++ Q +R ++L++FK+G I
Sbjct: 241 HLIKKYD-WHQVLIFSRKKQTADTIAQKMLATGIETKAFHGDLGQGAREQVLNDFKQGKI 299

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++ +V N+++P  AE+YIHRIGRTGRAG  GKA TL +++D   
Sbjct: 300 KALVATDVAARGLDIVELKYVVNYEIPFIAEDYIHRIGRTGRAGSVGKAVTLYSEDDALL 359

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           ++ +E +++K++   WL G      P L K        +RKN+   Q+
Sbjct: 360 LEEVETVLDKRLAPQWLPG----FEPDLTK----SEPVSRKNSKTAQR 399


>gi|326693280|ref|ZP_08230285.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
           [Leuconostoc argentinum KCTC 3773]
          Length = 518

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 155/371 (41%), Positives = 232/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+   GYV+ TPIQ KTIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    LI+ PTRELA Q AD  +K G + ++ V ++ GG     Q + L+
Sbjct: 61  ENIDLDNKNIQ---ALIVSPTRELAIQTADELKKLGHDKHVDVQVVFGGADIRRQIQNLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LDH NR  + ++ ++ LV+DEAD ML+MGF+  I+ I    P  RQT
Sbjct: 118 SHPQILVGTPGRLLDHINRKTVKIDQVKTLVLDEADEMLNMGFLDDIEAIIKNTPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+ NP+ I++     T + ++  FV   A+ ++K   + ++L 
Sbjct: 178 LLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFV--RARDNEKFDTMTRILD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      I+F   K+ V  L   LE +G+    +HG++ Q+ R ++LS FK   I ++V
Sbjct: 236 VQ-APTLAIVFGRTKRRVEELARGLEARGYHAAGLHGDLTQQMRSRVLSQFKSHEINILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HV+NFD+P   E+Y+HRIGRTGRAG  G + T VA  ++ ++ AI
Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAEGVSVTFVAPNEMDYLRAI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 EDLTKKRMTPL 365


>gi|283779149|ref|YP_003369904.1| DEAD/DEAH box helicase domain-containing protein [Pirellula staleyi
           DSM 6068]
 gi|283437602|gb|ADB16044.1| DEAD/DEAH box helicase domain protein [Pirellula staleyi DSM 6068]
          Length = 598

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 159/376 (42%), Positives = 225/376 (59%), Gaps = 7/376 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL+  +V A+  A Y +PT IQ++ IP  +   D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MSFEDLGLAEPLVRALNAANYTEPTAIQLQAIPPAIAGRDLQGCAQTGTGKTAAFALPLL 60

Query: 61  TIL----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L     +G+ R R+PR L+L PTRELA Q+ D+  +YG++       + GG+    Q 
Sbjct: 61  DRLIKNPRQGKLRGRLPRALVLSPTRELAGQIHDSVRRYGRHAMQNSLTIYGGVSQVPQV 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  G DVLI TPGR+ D   +G + ++ IE+ V+DEADRMLDMGF+P I+ I + +P 
Sbjct: 121 KGLNAGQDVLIATPGRLCDLMQQGYINLSEIEVFVLDEADRMLDMGFMPDIRRIIAKLPQ 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +QTLLFSATM  E+QK++   L +P  I +    +TA+ I       Y     K  LL 
Sbjct: 181 QKQTLLFSATMPPEIQKLASQLLHDPVEINIEPERATADGITQSLY--YVPTKHKPELLA 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +L+ ++  +  ++F   K         LEK G  V AIHGN  Q +R + L  FK G I
Sbjct: 239 SVLKREEVTR-AVVFVRTKHGCNKAALQLEKTGLKVDAIHGNKSQSARQRTLYAFKNGHI 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARGLD+  V HV N+D+P   E Y+HRIGRTGRAG+ G A +    E    
Sbjct: 298 QVLVATDVAARGLDVTGVSHVINYDLPMEPETYVHRIGRTGRAGKSGIAISFCDDEQRGL 357

Query: 357 IDAIEKLIEKKVDWLN 372
           +  +++++ KK+   N
Sbjct: 358 LRDVQRILGKKIPVEN 373


>gi|307941598|ref|ZP_07656953.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
 gi|307775206|gb|EFO34412.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
          Length = 436

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 157/375 (41%), Positives = 230/375 (61%), Gaps = 5/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
           +F  LGLS  ++ A+ + GY  PTPIQ   IPL+L+ +D+ G+AQTGTGKTA+F LP+  
Sbjct: 3   EFKSLGLSDTLLKAIEEIGYDTPTPIQKNAIPLILKGNDLLGLAQTGTGKTAAFGLPLAH 62

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +LE+GR    +  R LIL PTREL  Q+A N   + +   L V  ++GG+    Q K+L
Sbjct: 63  RLLEEGRTPEPKAARALILAPTRELVNQIASNLTSFIRKTPLRVTSVVGGVSINPQIKRL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD  +R  + +N    LV+DEAD+MLD+GFI  ++ I  LV   RQ
Sbjct: 123 GRGTDILVATPGRLLDLVDRKAVHLNKASYLVLDEADQMLDLGFIHALRRIAGLVAEKRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  +++ ++  +L  P+R+EV     TAE +    V    Q +K   L+  + 
Sbjct: 183 TLLFSATMPRQIEDLARTYLHKPERVEVAPAGKTAERVAQS-VHFMDQKAKSGFLVDMIC 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D     ++FC  K     L   L   G S  +IHGN  Q  R + +   +EGT++++
Sbjct: 242 ERAD--DTCLVFCRTKHGAERLMKRLVAAGVSAGSIHGNKSQNQRDRAIKGLREGTLKVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V HV+NF++P  AE Y+HRIGRT RAG  G A +L + E++  +  
Sbjct: 300 VATDVAARGIDIPGVSHVYNFELPEVAEAYVHRIGRTARAGASGDAISLCSAEEVALLRQ 359

Query: 360 IEKLIEKKVDWLNGD 374
           IEKL   +++  +G+
Sbjct: 360 IEKLTGIEIEVASGE 374


>gi|307705294|ref|ZP_07642156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
 gi|307621081|gb|EFO00156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
          Length = 520

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 151/371 (40%), Positives = 235/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP +RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPESRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q  +K A + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQ--EKFATMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|313624489|gb|EFR94491.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
           J1-023]
          Length = 516

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 158/371 (42%), Positives = 232/371 (62%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++ GL  K+V +V   G+ + TPIQ KTIPL L   D+ G AQTGTGKTA+F LPM+  
Sbjct: 4   FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++    V+    LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++ 
Sbjct: 64  IDQKNNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L ++N+E LV+DEAD ML+MGFI  I+ I   VP  RQTLL
Sbjct: 121 PQIVVGTPGRILDHINRRTLKLDNVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D ++++ E F+ +P+ I +     TA  IE  FV  + +  +K  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+F   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA+
Sbjct: 239 -APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E+
Sbjct: 298 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 357

Query: 363 LIEKKVDWLNG 373
             +K++  L  
Sbjct: 358 TTKKRMQPLQA 368


>gi|294339231|emb|CAZ87585.1| RNA helicase [Thiomonas sp. 3As]
          Length = 488

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 169/407 (41%), Positives = 237/407 (58%), Gaps = 9/407 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L  +++ AV D GY K TPIQ K IPL+L   D+ G AQTGTGKTA+F LP+L  
Sbjct: 17  FSDLALDARILRAVSDMGYEKLTPIQAKAIPLLLDGRDIMGAAQTGTGKTAAFSLPILQQ 76

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L    +    P     R L+L PTRELA QV  N + Y K+  L  A + GG+    Q  
Sbjct: 77  LLPLASTSVSPARHPVRALMLAPTRELADQVYTNLKAYAKHTPLRCACVFGGMDMAPQKA 136

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G D+L+ TPGR+LDH     + +  ++ +V+DEADRMLD+GF+P +Q I   +P  
Sbjct: 137 ELRTGVDLLVATPGRLLDHLEAKTVNLGQVQFVVLDEADRMLDIGFLPDLQRILGFLPKQ 196

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R TLLFSAT + E++++++++LQNP  +EV  P++TA  +E        +   K A L Q
Sbjct: 197 RTTLLFSATFSTEIKRLAQSYLQNPLLVEVARPNATATNVEQRVY--QVEEDDKRATLVQ 254

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+  + +   I+F N +     L   LE+ G    A+HG+  Q  R+  L  FK G IQ
Sbjct: 255 LLR-DNPLPQVIVFVNSRLGAGRLTRLLERDGIKAAAMHGDKSQAERLTTLEAFKRGEIQ 313

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V N+DVP  AE+Y+HRIGRTGRAG  G A TL    D + +
Sbjct: 314 ALVATDVAARGLDIAELPGVVNYDVPFSAEDYVHRIGRTGRAGASGLAITLATARDARSL 373

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKID-IAQHNHARKNNPIPQKS 403
             IEKLI+++ +     L     P    D   +H  AR    +P  +
Sbjct: 374 ADIEKLIKRQFEKQTVSLERAPRPRRDADETREHRIARAPRALPSDT 420


>gi|28198088|ref|NP_778402.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
 gi|182680716|ref|YP_001828876.1| DEAD/DEAH box helicase domain-containing protein [Xylella
           fastidiosa M23]
 gi|28056148|gb|AAO28051.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
 gi|182630826|gb|ACB91602.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23]
 gi|307579180|gb|ADN63149.1| ATP-dependent RNA helicase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 446

 Score =  300 bits (768), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 162/372 (43%), Positives = 232/372 (62%), Gaps = 6/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LGL P ++ A+ + GY  PTPIQ + IPL L  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MNFETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVL 60

Query: 61  TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L    + V    PR L+L PTRELA QV D+   Y K   ++ A++ GG+    Q   
Sbjct: 61  QRLMAASSNVGAGKPRALVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLDV 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-T 177
           L RG D+LI  PGR++DH  R  + ++ + ILV+DEADRMLDMGF+P I+ I   +P   
Sbjct: 121 LRRGVDLLIACPGRLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPRQN 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT  + +++++  F+  P+ + V + ++ AETI H         S+K  LL  
Sbjct: 181 RQTLLFSATFAEPIKQLALEFMCRPREVMVASHNTVAETITHRVHPV--DVSRKRELLLY 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL +QD+ +  ++F   K     L   LEK G    AIHGN  Q  R++ L++FK G + 
Sbjct: 239 LL-AQDSREQTLVFVRTKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVT 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LV +ED K +
Sbjct: 298 VLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLL 357

Query: 358 DAIEKLIEKKVD 369
             I +L+++ +D
Sbjct: 358 RQIVRLLDRDMD 369


>gi|110637416|ref|YP_677623.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110280097|gb|ABG58283.1| possible ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 463

 Score =  300 bits (768), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 146/369 (39%), Positives = 242/369 (65%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +L L+ +++ A+ +AGY +PT IQ K IP +L  HD+ G+AQTGTGKTA++ LP+L
Sbjct: 5   LNFEELKLNRQLLNAIEEAGYTEPTEIQSKAIPQILAGHDIIGVAQTGTGKTAAYALPIL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++   A+   PR +I  PTREL  Q+    ++  K  +L +  L GGI  + Q + L+
Sbjct: 65  MKIK--YAQGHNPRAVIFGPTRELVMQIEIAMKQLAKYTDLRIVALYGGIGPKLQKEHLQ 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TPGR LD +   ++++  ++ +V+DEAD+M+DMGF+P ++ +  ++P  RQ 
Sbjct: 123 KGVDIIVATPGRFLDLYLEEEIVLKEVKTMVLDEADKMMDMGFMPQLRKMLEVIPRKRQN 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM++ +++++E FL+ P +IEV TP +T  T+    +     +  K  LL+ L++
Sbjct: 183 LLFSATMSERVERLTEEFLEYPMKIEV-TPQATPATLISQKLYKVPNFKTKIHLLEYLIR 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC-AIHGNIDQRSRMKILSNFKEGTIQLM 299
             +++   IIF   KK+  ++   + ++  + C  IH N DQ SR+  + +FK+GTI+++
Sbjct: 242 KDESVTRAIIFVRTKKSADDIYKFIIRKTTNTCRIIHANKDQNSRINAMDDFKDGTIKIL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V HV NFDVP   ++YIHRIGRTGRA   G A T   + ++ HI+ 
Sbjct: 302 VATDVAARGIDVHEVSHVINFDVPIIYDDYIHRIGRTGRANHTGVAITFATEAEMYHIEK 361

Query: 360 IEKLIEKKV 368
           IEK+I  ++
Sbjct: 362 IEKIIRMQI 370


>gi|26988598|ref|NP_744023.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440]
 gi|148549053|ref|YP_001269155.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida F1]
 gi|24983373|gb|AAN67487.1|AE016375_5 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
           KT2440]
 gi|148513111|gb|ABQ79971.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
 gi|313499970|gb|ADR61336.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida BIRD-1]
          Length = 559

 Score =  300 bits (768), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 148/367 (40%), Positives = 234/367 (63%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L+P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ LIL PTRELA QVA  FE Y K    + V  + GG P   Q + +  
Sbjct: 68  IDVSK---REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + +++ ++ LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L+ PK +++ T + T   IE   +  +A   +K   + +LL+ 
Sbjct: 185 LFSATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHA--DQKIPAVLRLLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++     I F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 243 EE-FDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKV 368
           ++  +KV
Sbjct: 362 RVTGQKV 368


>gi|261404961|ref|YP_003241202.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|261281424|gb|ACX63395.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
          Length = 506

 Score =  300 bits (768), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 154/371 (41%), Positives = 230/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +SP ++ A+    Y  PTPIQ + IP VL   D+ G AQTGTGKTA+F +PM+
Sbjct: 1   MTFENLNISPVILKALAKENYKAPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMI 60

Query: 61  TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L +   +  M R    L+L PTRELA Q++DN + Y +   L    ++GG+  + Q +
Sbjct: 61  QLLNQQPPKPGMGRRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQER 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++GAD+LI TPGR+LD  N+  + + ++EILV+DEADRMLDMGFI  ++ I + +P  
Sbjct: 121 ALQQGADILIATPGRLLDLMNQKHVDLQHVEILVLDEADRMLDMGFIHDVKRIIAKMPSK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTL FSATM  E+ ++ +  L NP ++E+   SSTAE IE        +   K   L +
Sbjct: 181 KQTLFFSATMPAEITQLVQTLLHNPVKVEITPVSSTAERIEQSVY--LLETGNKQQQLNE 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++   ++ + ++F   K+    +   L K   +  AIHG+  Q SR   L+NFK G  +
Sbjct: 239 LMKD-PSIVSALVFTRTKRGADRVARGLNKVNITAQAIHGDKSQTSRQTALNNFKSGATR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++ HV NF++PN  E Y+HRIGRTGRAG  G A +    +++  +
Sbjct: 298 VLVATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAISFCEVDEVPFL 357

Query: 358 DAIEKLIEKKV 368
             IEKLI K +
Sbjct: 358 RDIEKLIGKSI 368


>gi|146282848|ref|YP_001173001.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri A1501]
 gi|145571053|gb|ABP80159.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas stutzeri
           A1501]
          Length = 553

 Score =  300 bits (768), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 148/367 (40%), Positives = 233/367 (63%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+   V+ A+   GY +P+PIQ + IP++L  HD+ G AQTGTGKTA+F LP+L+ 
Sbjct: 8   FAALGIHSAVLAAISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAFALPILSK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ LIL PTRELA QVA  FE Y K    ++V  + GG P   Q K + +
Sbjct: 68  IDPAK---REPQALILAPTRELALQVATAFETYSKQMPGVSVVAIYGGAPMGPQLKAIRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH +R   L++ I  LV+DEAD ML +GF+  ++ I   +P +RQ++
Sbjct: 125 GAQVIVATPGRLVDHLSRNSELLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQSV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L+ P+ I++   + T   IE   +  +A    +  L  +LL+ 
Sbjct: 185 LFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVL--RLLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 243 ED-FDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKV 368
           ++  +KV
Sbjct: 362 RVTNQKV 368


>gi|212638043|ref|YP_002314563.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
 gi|212559523|gb|ACJ32578.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
          Length = 471

 Score =  300 bits (768), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 155/370 (41%), Positives = 230/370 (62%), Gaps = 6/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + GLSP+++ AV   G+ + TPIQ  TIPL LQ  DV G AQTGTGKTA+F +P++  
Sbjct: 7   FNEFGLSPELMKAVSKMGFEEATPIQAATIPLSLQNRDVIGQAQTGTGKTAAFGIPLIEK 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     V+    +++ PTRELA QV++   K G    + V  + GG   E Q + L++ 
Sbjct: 67  IDMNNDAVQ---AIVVAPTRELAIQVSEELYKIGSTKRVRVLPIYGGQDIERQIRALKKH 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH  R  L + ++  +V+DEAD ML+MGF+  I+ I S VP  RQTLL
Sbjct: 124 PHIIVGTPGRILDHIQRRTLRLQHVHTVVLDEADEMLNMGFVEDIEAILSHVPTERQTLL 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + +++++E F+ NP+ + V     T   IE  ++    Q  KK   L +LL  Q
Sbjct: 184 FSATMPEPIRRIAERFMNNPELVRVKAKEMTVPNIEQYYIEI--QEKKKFDTLTRLLDIQ 241

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  R+ +L  FKEG+I ++VA+
Sbjct: 242 -SPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIDILVAT 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   +I  +  IEK
Sbjct: 301 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGMAITFVTPREIGQLHHIEK 360

Query: 363 LIEKKVDWLN 372
             ++K++ + 
Sbjct: 361 TTKRKMERMK 370


>gi|254561714|ref|YP_003068809.1| RNA helicase [Methylobacterium extorquens DM4]
 gi|254268992|emb|CAX24953.1| RNA helicase [Methylobacterium extorquens DM4]
          Length = 510

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 148/368 (40%), Positives = 231/368 (62%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D GL+  V+ A+ +AGYV PTPIQ + +P  ++  D+CGIAQTGTGKTA+F LP+L  
Sbjct: 4   FTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHR 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  RA  R  R L+L PTRELA+Q+AD+F  YG++   T  ++ GG+    Q + + 
Sbjct: 64  LSLDSRRAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQERAIA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGR++D  +R  L +  +EILV+DEAD+MLD+GFI  ++ I  ++P  RQ+
Sbjct: 124 PGVDILVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAKRQS 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   +  +++ +L NP ++ V   ++TAE ++   +  +     K ALL  +L+
Sbjct: 184 LFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVI--FCHTGAKQALLNHVLR 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               ++  ++F   K     +   L+K      AIHGN  Q  R + L+ F++G+ +++V
Sbjct: 242 D-PKIERVLVFTRTKHGADRVVRGLDKANVVSAAIHGNKSQPQRERALAAFRDGSCRVLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV N+D+PN  E+Y+HRIGRT RAG  G+A +    E+  ++  I
Sbjct: 301 ATDIAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRDI 360

Query: 361 EKLIEKKV 368
           E+   +K+
Sbjct: 361 ERTTRQKI 368


>gi|90414211|ref|ZP_01222192.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90324761|gb|EAS41299.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 431

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 167/416 (40%), Positives = 253/416 (60%), Gaps = 11/416 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA    SP++V A+ + GY K TPIQ + IP   +  D+   AQTGTGKTA+F LP++
Sbjct: 1   MSFASQNFSPEIVRALTECGYEKLTPIQQQAIPHARRGSDILANAQTGTGKTAAFSLPII 60

Query: 61  T-ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             IL+K ++R R   R LIL PTRELAAQ+A N  +Y K  +L  A + GG    +Q + 
Sbjct: 61  QQILDKPKSRGRFNVRALILAPTRELAAQIAQNIAEYTKYTDLKTAAIYGGTKMSSQERT 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE+G D+L+ TPGR+++H +   + + NIE LV DEADRMLDMGFI  ++ +   V    
Sbjct: 121 LEKGVDILVATPGRLIEHVDLKNVSLTNIEFLVFDEADRMLDMGFITDMRKVMGEVNSNP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + ++  ++ + L+ PKRI V+  ++TA+T+ H  V       +K  LL +L
Sbjct: 181 QIMMFSATSSKQMNALASDILRKPKRIMVDRENTTADTVAH--VVYPVDQERKRELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  ++  K  ++F N K+    L   L+K G      HG+  Q +R + L  FKEG  ++
Sbjct: 239 IGKKN-WKQVLVFVNYKETANELVKELKKDGIKAVLCHGDKAQSARRRALDEFKEGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+++AARGLDI  + HV NFD+P  AE+Y+HRIGRTGRAG  G A + V+KE+   + 
Sbjct: 298 MVATEVAARGLDIQALPHVVNFDMPFLAEDYVHRIGRTGRAGLKGHAISFVSKEEELTLV 357

Query: 359 AIEKLIEK---KVDWLNGDLSSLNPPLEKIDIA---QHNHARKNNPIPQKSTGFDR 408
            +E+LI +   +V  L  + ++ +  ++K++     +   +R NNP  Q+S+   R
Sbjct: 358 QVEQLIGQRIHRVQLLGYEPTNRDAFVQKMNTKAAFKDRKSRTNNPSEQQSSSERR 413


>gi|253573302|ref|ZP_04850645.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251846830|gb|EES74835.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 518

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 150/366 (40%), Positives = 233/366 (63%), Gaps = 6/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD GL PKV+ A+ + G+ + TPIQ K+IP+ L   D+ G AQTGTGKTA+F LP++  
Sbjct: 4   FADFGLEPKVLQAITELGFEEATPIQAKSIPIALSGRDLIGQAQTGTGKTAAFGLPLINK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + K   R+     L++ PTRELA QVA+   K  +        + GG     Q + L++ 
Sbjct: 64  IPKEEDRIV---ALVMTPTRELAIQVAEEIGKLSRFKGTRSLPIYGGQDIVRQIRALKKK 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++I TPGR+LDH NR  + +++++ +V+DEAD MLDMGF+  IQ+I  LVP  RQT+L
Sbjct: 121 PQIIIGTPGRLLDHINRKTIKLDDVKTVVLDEADEMLDMGFMDDIQSILKLVPEDRQTML 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +QK+++ FL+NP+ + V     +A  I+  ++  + +  +K   L +LL   
Sbjct: 181 FSATMPANIQKLAQQFLKNPEHVSVIPKQVSAPLIDQAYIEVHER--QKFDALTRLL-DM 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           ++ +  I+F   K+ V  L  +L+KQG+S   +HG++ Q  R  ++  F++G+I ++VA+
Sbjct: 238 ESPELAIVFGRTKRRVDELSEALQKQGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  V HV NFD+P   E+Y+HRIGRTGRAG+ G A++ V   ++ H+  IE+
Sbjct: 298 DVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGVAWSFVTPREMDHLRFIER 357

Query: 363 LIEKKV 368
           +   K+
Sbjct: 358 ITRHKI 363


>gi|109896747|ref|YP_660002.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c]
 gi|109699028|gb|ABG38948.1| ATP-dependent RNA helicase CsdA [Pseudoalteromonas atlantica T6c]
          Length = 579

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 152/372 (40%), Positives = 237/372 (63%), Gaps = 11/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL L  +++ A+   GY KPTPIQ + IPL+++ HD+ G AQTGTGKTA+F LPML
Sbjct: 7   LTFKDLNLPAELLQALEKVGYEKPTPIQAQCIPLIMEGHDLLGTAQTGTGKTAAFALPML 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
             ++   +  ++   L+L PTRELA QVA+ F+ Y   +  L V  + GG  ++ Q ++L
Sbjct: 67  ANVDANNSNTQL---LVLAPTRELAIQVAEAFQVYASFSRKLNVLPIYGGSSYDNQIRQL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA V++ TPGR++DH  +G L ++N++ LV+DEAD ML MGFI  ++ I S  P  RQ
Sbjct: 124 RRGAQVVVGTPGRVIDHIKKGTLKLDNLKFLVLDEADEMLRMGFIDDVEWILSHAPAERQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQ 237
           T LFSATM D ++K+++ +L +PK++++ +  +TA TI+  +C VA +     K   L +
Sbjct: 184 TALFSATMPDPIRKITKRYLSDPKQVKIESKVATASTIKQRYCQVAGH----HKLEALTR 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++ ++     IIF   K   + L   L  +G++V  ++G+I Q SR + +   K G I 
Sbjct: 240 IMEVEE-FDAVIIFVRTKTATMELSEKLSARGYAVEPLNGDIPQNSRERTVERLKRGKID 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARGLD+  V HV N+DVP   E+Y+HRIGRTGRAGR G A   ++  + + +
Sbjct: 299 ILVATDVVARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAGRQGDAILFISHREKRML 358

Query: 358 DAIEKLIEKKVD 369
            +IE+   + +D
Sbjct: 359 FSIERATRQSID 370


>gi|212712156|ref|ZP_03320284.1| hypothetical protein PROVALCAL_03238 [Providencia alcalifaciens DSM
           30120]
 gi|212685203|gb|EEB44731.1| hypothetical protein PROVALCAL_03238 [Providencia alcalifaciens DSM
           30120]
          Length = 477

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 168/409 (41%), Positives = 247/409 (60%), Gaps = 17/409 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+DL L+ +++ A+ + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L  
Sbjct: 32  FSDLALNEEILRAINELGYESPTPIQQQAIPAVLAGKDLLASAQTGTGKTAGFTLPILQK 91

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +++  R   R P R LIL PTRELAAQVA+N ++Y ++  +   ++ GG+    Q  KL 
Sbjct: 92  LVDNPRGNNRRPIRALILTPTRELAAQVAENVKEYSRHLKIRSFVVFGGVSINPQMMKLR 151

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+LD  ++  + ++ +E+ V+DEADRMLDMGFI  I+ + + +P  RQ 
Sbjct: 152 GGVDVLIATPGRLLDLEHQNAVDLSQVEVFVLDEADRMLDMGFIHDIRRVITKLPKKRQN 211

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT +DE+++++   L NP  IEV   +S +E +           ++K  LL  ++ 
Sbjct: 212 LLFSATFSDEIKQLASKLLNNPVSIEVAPRNSASEQVTQYV--HLVDKNRKAELLSFMI- 268

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  ++F   K     L   L K G    AIHGN  Q +R + L++FK G I+++V
Sbjct: 269 GRENWQQVLVFTRTKHGANRLAEHLNKDGVKAAAIHGNKSQGARTRALADFKSGDIRVLV 328

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + +V NF++PN AE+Y+HRIGRTGRA   G A +LV  ++ K +  I
Sbjct: 329 ATDIAARGLDIEQLPYVVNFELPNVAEDYVHRIGRTGRAEATGMAVSLVCIDEAKLLKDI 388

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           EKL++K +            PL  I+  + N + K  PI + S   DRR
Sbjct: 389 EKLLKKSI------------PLMAIEGYEPNPSIKAEPIQKPSQRNDRR 425


>gi|71898621|ref|ZP_00680791.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|71731568|gb|EAO33629.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
          Length = 446

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 162/372 (43%), Positives = 232/372 (62%), Gaps = 6/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LGL P ++ A+ + GY  PTPIQ + IPL L  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MNFETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVL 60

Query: 61  TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L    + V    PR L+L PTRELA QV D+   Y K   ++ A++ GG+    Q   
Sbjct: 61  QRLMAASSNVGAGKPRALVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLDV 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-T 177
           L RG D+LI  PGR++DH  R  + ++ + ILV+DEADRMLDMGF+P I+ I   +P   
Sbjct: 121 LRRGVDLLIACPGRLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPRQN 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT  + +++++  F+  P+ + V + ++ AETI H         S+K  LL  
Sbjct: 181 RQTLLFSATFAEPIKQLALEFMCRPREVMVASHNTVAETITHRVHPV--DVSRKRELLLY 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL +QD+ +  ++F   K     L   LEK G    AIHGN  Q  R++ L++FK G + 
Sbjct: 239 LL-AQDSREQTLVFVRTKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVT 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LV +ED K +
Sbjct: 298 VLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLL 357

Query: 358 DAIEKLIEKKVD 369
             I +L+++ +D
Sbjct: 358 RQIVRLLDRDMD 369


>gi|163741384|ref|ZP_02148775.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           2.10]
 gi|161385118|gb|EDQ09496.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           2.10]
          Length = 458

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 151/376 (40%), Positives = 234/376 (62%), Gaps = 9/376 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ +GL  +++  + + GY  PTPIQ + IP  L   DV G+AQTGTGKTA+F +P++ 
Sbjct: 19  EFSTMGLPEQLLTRIAELGYTDPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLIA 78

Query: 62  -ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +++ GR    +  R L+L PTRELA Q+A N +   +   +   L++GG+    Q  +L
Sbjct: 79  QMMQYGRKPAAKTVRGLVLAPTRELANQIAANLKGLTEGTPIKTGLVVGGVSINPQISRL 138

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+LI TPGR+LD  +RG L + + + LV+DEAD+MLD+GFI  ++ I +L+P  RQ
Sbjct: 139 SRGTDILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEQRQ 198

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  ++ +++ ++LQ+P RIEVN P   A+ I          +  K   L  L 
Sbjct: 199 TMLFSATMPKQMNEIANSYLQSPVRIEVNPPGKAADKITQSV-----HFIAKAEKLSLLK 253

Query: 240 QSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +     K+   ++F   K  +  L  +L   GFS  AIHGN  Q  R + L++FK G ++
Sbjct: 254 ELLGAHKDERTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALASFKSGEVK 313

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIPDV +V+N+++PN  + Y+HRIGRT RAG+ G+A    A +++  +
Sbjct: 314 ILVATDVAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEMGEL 373

Query: 358 DAIEKLIEKKVDWLNG 373
            AI+K +   +   +G
Sbjct: 374 KAIQKTMNLNIPVASG 389


>gi|323358213|ref|YP_004224609.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
 gi|323274584|dbj|BAJ74729.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
          Length = 585

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 150/363 (41%), Positives = 229/363 (63%), Gaps = 7/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   V+ A+ D GY  P+ IQ  TIP++LQ  DV G+AQTGTGKTA+F LP+L
Sbjct: 19  LTFADLGLDANVLKALKDVGYETPSAIQAATIPVLLQGRDVVGLAQTGTGKTAAFALPVL 78

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           + +E G    + P+ L+L PTRELA QV + FEKY  +   ++V  + GG  +  Q   L
Sbjct: 79  SQMETGH---KNPQALVLAPTRELALQVCEAFEKYAAHIKGVSVLPVYGGQGYGQQLSAL 135

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DV++ TPGRI+DH ++G L ++ ++ LV+DEAD ML MGF   ++ I +  P T+Q
Sbjct: 136 RRGVDVIVGTPGRIMDHLDKGTLDLSELKFLVLDEADEMLKMGFAEDVETILADTPSTKQ 195

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  +++++S  +L +P+ I V T ++T+  I   ++     Y +K   L ++L
Sbjct: 196 VALFSATMPAQIRRISAQYLNDPEEITVKTKTTTSANITQRYL--IVSYQQKIDALTRIL 253

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++  +  I+F   K     +   L  +G++  AI+G+I Q  R + ++  K G + ++
Sbjct: 254 EVEN-FEGMIVFTRTKNETETVAEKLRARGYTAAAINGDIAQVQRERTVNQLKSGKLDIL 312

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A + V   + + + A
Sbjct: 313 VATDVAARGLDVERISHVVNYDLPIDTESYVHRIGRTGRAGRTGDAISFVTPRERRMLTA 372

Query: 360 IEK 362
           IEK
Sbjct: 373 IEK 375


>gi|52144993|ref|YP_081836.1| DEAD/DEAH box helicase [Bacillus cereus E33L]
 gi|81689748|sp|Q63GX5|CSHA_BACCZ RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|51978462|gb|AAU20012.1| DEAD/DEAH box helicase [Bacillus cereus E33L]
          Length = 528

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 159/381 (41%), Positives = 238/381 (62%), Gaps = 8/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  
Sbjct: 4   FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    +++ PTRELA QV +   K GK+  + +  + GG     Q + L++ 
Sbjct: 64  VDTHKESVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLL
Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+  P+ I+V     T   I+  ++    Q  KK  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA+
Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357

Query: 363 LIEKKVDWLNGDLSSLNPPLE 383
             ++K+D +  D  +L+  LE
Sbjct: 358 TTKRKMDRM--DAPTLDEALE 376


>gi|315302253|ref|ZP_07873161.1| dead-box ATP-dependent rna helicase ydbr [Listeria ivanovii FSL
           F6-596]
 gi|313629376|gb|EFR97601.1| dead-box ATP-dependent rna helicase ydbr [Listeria ivanovii FSL
           F6-596]
          Length = 526

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 158/371 (42%), Positives = 232/371 (62%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++ GL  K+V +V   G+ + TPIQ KTIPL L   D+ G AQTGTGKTA+F LPM+  
Sbjct: 6   FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++    V+    LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++ 
Sbjct: 66  IDQKSNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L ++N+E LV+DEAD ML+MGFI  I+ I   VP  RQTLL
Sbjct: 123 PQIVVGTPGRILDHINRRTLKLDNVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D ++++ E F+ +P+ I +     TA  IE  FV  + +  +K  +L +LL  Q
Sbjct: 183 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+F   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA+
Sbjct: 241 -APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E+
Sbjct: 300 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 359

Query: 363 LIEKKVDWLNG 373
             +K++  L  
Sbjct: 360 TTKKRMQPLQA 370


>gi|307278457|ref|ZP_07559532.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
 gi|306504963|gb|EFM74158.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
          Length = 536

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 157/384 (40%), Positives = 239/384 (62%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGL+P+++ AV  AG+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 22  LKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++   A  R+ + L++ PTRELA Q  +   + G++  + V  + GG     Q + L+
Sbjct: 82  NKID---ADNRVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLK 138

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  +E LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 139 DRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQT 198

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F++ P+ +++     TA+ I+  +V +  +  +K  ++ +LL 
Sbjct: 199 LLFSATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRS--KDFEKFDIMTRLLD 256

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 257 VQ-TPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 315

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 316 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVI 375

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       ++ L PP EK
Sbjct: 376 ENLTKKR-------MTPLRPPTEK 392


>gi|228950768|ref|ZP_04112897.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229067991|ref|ZP_04201304.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185]
 gi|229077588|ref|ZP_04210230.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2]
 gi|229176827|ref|ZP_04304229.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W]
 gi|228606719|gb|EEK64138.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W]
 gi|228705727|gb|EEL58071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2]
 gi|228715129|gb|EEL66992.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185]
 gi|228808908|gb|EEM55398.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 525

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 159/381 (41%), Positives = 238/381 (62%), Gaps = 8/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  
Sbjct: 4   FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    +++ PTRELA QV +   K GK+  + +  + GG     Q + L++ 
Sbjct: 64  VDTHKESVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLL
Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+  P+ I+V     T   I+  ++    Q  KK  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA+
Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357

Query: 363 LIEKKVDWLNGDLSSLNPPLE 383
             ++K+D +  D  +L+  LE
Sbjct: 358 TTKRKMDRM--DAPTLDEALE 376


>gi|227891791|ref|ZP_04009596.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
 gi|227866356|gb|EEJ73777.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
          Length = 499

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 157/372 (42%), Positives = 234/372 (62%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGL   ++ AV  +G+ + TPIQ +TIPLVL  +DV G AQTGTGKTA+F LP+L
Sbjct: 8   LKFGELGLDKSLLKAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVL 67

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+     +R  + +I+ PTRELA Q  +     GK     V ++ GG     Q K+LE
Sbjct: 68  QQLD---LDLRQIQAVIISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLE 124

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +L+ TPGR+LDH  RG + + +++ L++DEAD MLDMGF+  I+ I   VP  RQ
Sbjct: 125 QHTPHILVGTPGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E+ K+ E F+ NP+ +++     T + ++  FV T  +  +K  ++ +L+
Sbjct: 185 TLLFSATMPKEILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKT--KEFEKFDIMTRLI 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  I+F   K+ V  L   LE +G++   IHG++ Q+ RM +L  FK G + ++
Sbjct: 243 DVQ-APELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDIL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG HG + T V   ++ ++  
Sbjct: 302 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRV 361

Query: 360 IEKLIEKKVDWL 371
           IEKL +K++D L
Sbjct: 362 IEKLTKKRMDPL 373


>gi|206972279|ref|ZP_03233226.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|218235804|ref|YP_002365074.1| DEAD/DEAH box helicase [Bacillus cereus B4264]
 gi|228919172|ref|ZP_04082546.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|229148635|ref|ZP_04276889.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550]
 gi|206732853|gb|EDZ50028.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|218163761|gb|ACK63753.1| DEAD/DEAH box helicase [Bacillus cereus B4264]
 gi|228634893|gb|EEK91468.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550]
 gi|228840483|gb|EEM85750.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 533

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 159/381 (41%), Positives = 238/381 (62%), Gaps = 8/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  
Sbjct: 4   FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    +++ PTRELA QV +   K GK+  + +  + GG     Q + L++ 
Sbjct: 64  VDTHKESVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLL
Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+  P+ I+V     T   I+  ++    Q  KK  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA+
Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357

Query: 363 LIEKKVDWLNGDLSSLNPPLE 383
             ++K+D +  D  +L+  LE
Sbjct: 358 TTKRKMDRM--DAPTLDEALE 376


>gi|28377407|ref|NP_784299.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
 gi|254555590|ref|YP_003062007.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
 gi|300769652|ref|ZP_07079536.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308179612|ref|YP_003923740.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28270239|emb|CAD63140.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
 gi|254044517|gb|ACT61310.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
 gi|300492805|gb|EFK27989.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308045103|gb|ADN97646.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 528

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 152/383 (39%), Positives = 241/383 (62%), Gaps = 13/383 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS  ++ AV  AGY + TPIQ +TIP+VL+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFTELGLSDSLLKAVNRAGYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+     ++    L++ PTRELA Q  +   + GK+    V ++ GG     Q + L+
Sbjct: 61  QRLDFDNHNIQ---ALVVSPTRELAIQTQEEIFRLGKDERAKVQVVYGGADIRRQIRNLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V++ TPGR+LDH  RG + ++++++LV+DEAD ML+MGF+  I++I   VP  RQT
Sbjct: 118 QNPQVIVGTPGRLLDHIRRGTVKLDHVKMLVLDEADEMLNMGFLEDIESIIKQVPDERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  E++++   F++ P  +++ +   TA+T++  +V   A+  +K  ++ +L  
Sbjct: 178 MLFSATMPPEIKRIGVQFMKEPHHVKIKSKEMTADTVDQYYVK--AKEFEKFDIMTRLFD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   +  I+F   K+ V  L   LE +G++   IHG++ Q+ R +I+  FK G + ++V
Sbjct: 236 VQ-APELTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFKAGKLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV+N+D+P   ++Y+HRIGRTGRAG  G + T V   +++++  I
Sbjct: 295 ATDVAARGLDVSGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSLTFVTPNEMEYLRVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           EKL +K+       +  L PP E
Sbjct: 355 EKLTKKR-------MLPLKPPTE 370


>gi|160898343|ref|YP_001563925.1| DEAD/DEAH box helicase domain-containing protein [Delftia
           acidovorans SPH-1]
 gi|160363927|gb|ABX35540.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
          Length = 598

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 151/373 (40%), Positives = 238/373 (63%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AVL+ GY  PTPIQ + IP VL  HD+   AQTGTGKTA+F LPML
Sbjct: 1   MTFEELNLAPAILKAVLEEGYENPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L +G+        +  R L+L PTRELAAQV ++   Y K  ++   ++ GG+  + Q
Sbjct: 61  QRLSQGQVPRNKFGGKGIRALVLTPTRELAAQVEESVRSYAKYLDINSTVIFGGVGMKPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             ++++G D+L+ TPGR+LD   +G + ++ +E+LV+DEADRMLDMGFI  ++ + +LVP
Sbjct: 121 IDRIKKGVDILVATPGRLLDLQQQGFMDLSTVEVLVLDEADRMLDMGFIHDVKKVLALVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE++ ++   L+NP+ I+V   ++T + I    +    +  KK  LL
Sbjct: 181 KDKQSLLFSATFSDEIRDLANGLLRNPQSIQVTPSNTTVQRITQV-IHPVGRGKKKQVLL 239

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              + +++     ++F   K    N+   L K   S  A+HGN  Q +R + L+ FK G 
Sbjct: 240 H--IINENNWSQVLVFTRTKFGANNVAEFLTKNNISAMALHGNKSQSARTQALAGFKTGE 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VA+D+AARG+DI ++ HV N+++PN +E+Y+HRIGRTGRAGR G A +LV  ++  
Sbjct: 298 LRALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGREGHAVSLVCMDEEG 357

Query: 356 HIDAIEKLIEKKV 368
            +  IE+  ++++
Sbjct: 358 FMMDIERFTKQEI 370


>gi|330503492|ref|YP_004380361.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
 gi|328917778|gb|AEB58609.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
          Length = 560

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 148/367 (40%), Positives = 233/367 (63%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL P ++ A+   GY +P+PIQ + IP++L  HD+ G AQTGTGKTA+F LP+L+ 
Sbjct: 8   FAALGLHPNILAALTAVGYEEPSPIQSQAIPVILAGHDMIGQAQTGTGKTAAFALPLLSK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ LIL PTRELA QVA  FE Y K    + V  + GG P   Q K + +
Sbjct: 68  IDPAK---REPQVLILAPTRELALQVATAFETYSKQMPGVNVVAVYGGAPMGPQLKAIRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  R + +++ I+ LV+DEAD ML +GF+  ++ I   +P +RQ++
Sbjct: 125 GAQIIVATPGRLVDHLRRDEKVLSTIQHLVLDEADEMLKLGFMDDLEIIFEAMPESRQSV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L+ P+ I++   + T   IE   +  +A       L  +LL+ 
Sbjct: 185 LFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVSRIEQAHLMIHADQKTNAVL--RLLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I F   K+  ++L  +LE +GF   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 243 ED-FDALIAFVRTKQATLDLASALEAKGFKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKV 368
           ++  +KV
Sbjct: 362 RVTGQKV 368


>gi|29375434|ref|NP_814588.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis V583]
 gi|227520091|ref|ZP_03950140.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX0104]
 gi|227554958|ref|ZP_03985005.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           HH22]
 gi|229546689|ref|ZP_04435414.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX1322]
 gi|229548784|ref|ZP_04437509.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           ATCC 29200]
 gi|293383725|ref|ZP_06629632.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|293388799|ref|ZP_06633292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|307267925|ref|ZP_07549313.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|307271845|ref|ZP_07553113.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|307275145|ref|ZP_07556297.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|307286655|ref|ZP_07566741.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|307290778|ref|ZP_07570673.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|312901614|ref|ZP_07760885.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|312904406|ref|ZP_07763566.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|312907060|ref|ZP_07766056.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|312952884|ref|ZP_07771745.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|312978684|ref|ZP_07790411.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|29342894|gb|AAO80658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis V583]
 gi|227072435|gb|EEI10398.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX0104]
 gi|227175901|gb|EEI56873.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           HH22]
 gi|229306092|gb|EEN72088.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           ATCC 29200]
 gi|229308195|gb|EEN74182.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX1322]
 gi|291078801|gb|EFE16165.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|291081956|gb|EFE18919.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|306498159|gb|EFM67681.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|306502133|gb|EFM71417.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|306508173|gb|EFM77291.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|306511351|gb|EFM80353.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|306515566|gb|EFM84093.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|310627045|gb|EFQ10328.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|310629187|gb|EFQ12470.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|310632233|gb|EFQ15516.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|311288391|gb|EFQ66947.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|311291302|gb|EFQ69858.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|315027034|gb|EFT38966.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
 gi|315029211|gb|EFT41143.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
 gi|315032370|gb|EFT44302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
 gi|315034370|gb|EFT46302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
 gi|315145185|gb|EFT89201.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
 gi|315148006|gb|EFT92022.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
 gi|315149607|gb|EFT93623.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
 gi|315153133|gb|EFT97149.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
 gi|315155152|gb|EFT99168.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
 gi|315158764|gb|EFU02781.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
 gi|315163093|gb|EFU07110.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
 gi|315165079|gb|EFU09096.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
 gi|315167890|gb|EFU11907.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
 gi|315171750|gb|EFU15767.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
 gi|315174909|gb|EFU18926.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
 gi|315574115|gb|EFU86306.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
 gi|315577243|gb|EFU89434.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
 gi|315581764|gb|EFU93955.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
 gi|327534429|gb|AEA93263.1| ATP-dependent RNA helicase DeaD [Enterococcus faecalis OG1RF]
          Length = 536

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 157/384 (40%), Positives = 239/384 (62%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGL+P+++ AV  AG+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 22  LKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++   A  R+ + L++ PTRELA Q  +   + G++  + V  + GG     Q + L+
Sbjct: 82  NKID---ADNRVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLK 138

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  +E LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 139 DRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQT 198

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F++ P+ +++     TA+ I+  +V +  +  +K  ++ +LL 
Sbjct: 199 LLFSATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRS--KDFEKFDIMTRLLD 256

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 257 VQ-TPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 315

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 316 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVI 375

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       ++ L PP EK
Sbjct: 376 ENLTKKR-------MTPLRPPTEK 392


>gi|77359936|ref|YP_339511.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874847|emb|CAI86068.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 616

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 155/384 (40%), Positives = 238/384 (61%), Gaps = 15/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LSP ++ AV + GY  P+ IQ + IPL+L+R DV G+AQTGTGKTA+F LP+L  
Sbjct: 7   FESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLLNN 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     V+ P+ L+L PTRELA QVA+ FE+Y K+   + V  L GG  +  Q   L R
Sbjct: 67  IDPS---VKQPQILVLTPTRELAIQVAEAFEQYAKHVRGIEVLALYGGQSYSIQLSALRR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH NRG +  + ++ LV+DEAD ML MGFI  +++I    P  +QT 
Sbjct: 124 GAQVIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPREKQTC 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  ++Q +S  ++ NP+++ ++  +ST  ++E  F    A   K  A+++ L   
Sbjct: 184 LFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVF--WNASIHKNKAIVRFLEAE 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   +  I+F   + + V L   LE++GFS   ++G+++Q++R + +   K G + +++A
Sbjct: 242 Q--YEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVERLKSGMLNVVIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D+P  +E Y+HRIGRTGRAGR GKA   V     KH +   
Sbjct: 300 TDVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFV-----KHNE--R 352

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKI 385
            L++  +   N D++ +  P  KI
Sbjct: 353 YLLKNIIRHTNSDIAQVELPTAKI 376


>gi|171913474|ref|ZP_02928944.1| DEAD/DEAH box helicase-like protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 452

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 152/370 (41%), Positives = 228/370 (61%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   ++ A+ +AGY +PTPIQ   IP V+  HD+ GIAQTGTGKTA+F LPML
Sbjct: 1   MPFRALGLHENILKAIQEAGYSEPTPIQAAAIPQVVAGHDMIGIAQTGTGKTAAFTLPML 60

Query: 61  TILEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L +  G+  +R  + LIL PTREL AQ+ DN   Y K+  L VA++ GG+    Q + 
Sbjct: 61  HLLAQLHGQGPLRGIKALILAPTRELVAQIHDNVRAYAKHLPLKVAMIFGGVGERPQIEA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D++I TPGR++D   +     N++E LV+DEADRMLDMGF+P I+ I   +P  R
Sbjct: 121 LRAGTDLVIATPGRLIDLMGQRHGNFNSLEFLVLDEADRMLDMGFLPSIKRIVKALPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT++ E++ ++  FL +PK +++   S+ AE++   FV    ++ K   L+  L
Sbjct: 181 QTLLFSATLSKEIEALTHEFLNHPKTVQIGKRSNPAESVTQ-FVYEVPKHLKPALLVHLL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                 M   ++F   K     +   L++ G     +H N  Q  R++ L++FK G  ++
Sbjct: 240 KDPAFNMV--LVFSRMKHGADRIARHLDRYGIKTVTLHSNRTQNQRLRALADFKSGAARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + HV N+D P  AE+Y+HRIGRTGRA   G A + ++ ED   + 
Sbjct: 298 LVATDIAARGIDVDGISHVVNYDFPMHAEDYVHRIGRTGRAHAVGDAISFISPEDHGPLK 357

Query: 359 AIEKLIEKKV 368
           ++E+ I + +
Sbjct: 358 SLERFIGRGI 367


>gi|116628255|ref|YP_820874.1| superfamily II DNA/RNA helicase [Streptococcus thermophilus LMD-9]
 gi|116101532|gb|ABJ66678.1| Superfamily II DNA and RNA helicase [Streptococcus thermophilus
           LMD-9]
          Length = 527

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 155/371 (41%), Positives = 232/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  +  AV+ AG+ +P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +K R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L 
Sbjct: 61  ---DKIRTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +NNIE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEKRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T   ++  F+    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +G     IHG++DQ  R++I+ +FK G I ++V
Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGSRAEGIHGDLDQNKRLRIIRDFKNGQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLGII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|228956670|ref|ZP_04118461.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228803008|gb|EEM49835.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 517

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 159/381 (41%), Positives = 238/381 (62%), Gaps = 8/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  
Sbjct: 4   FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    +++ PTRELA QV +   K GK+  + +  + GG     Q + L++ 
Sbjct: 64  VDTHKESVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLL
Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+  P+ I+V     T   I+  ++    Q  KK  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA+
Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357

Query: 363 LIEKKVDWLNGDLSSLNPPLE 383
             ++K+D +  D  +L+  LE
Sbjct: 358 TTKRKMDRM--DAPTLDEALE 376


>gi|229041132|ref|ZP_04189892.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676]
 gi|228727214|gb|EEL78411.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676]
          Length = 525

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 159/381 (41%), Positives = 238/381 (62%), Gaps = 8/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  
Sbjct: 4   FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    +++ PTRELA QV +   K GK+  + +  + GG     Q + L++ 
Sbjct: 64  VDTHKESVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLL
Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+  P+ I+V     T   I+  ++    Q  KK  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA+
Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357

Query: 363 LIEKKVDWLNGDLSSLNPPLE 383
             ++K+D +  D  +L+  LE
Sbjct: 358 TTKRKMDRM--DAPTLDEALE 376


>gi|229107908|ref|ZP_04237540.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15]
 gi|229125742|ref|ZP_04254771.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-Cer4]
 gi|229143032|ref|ZP_04271470.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST24]
 gi|296501059|ref|YP_003662759.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|146291075|sp|Q81IT9|CSHA_BACCR RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|228640440|gb|EEK96832.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST24]
 gi|228657715|gb|EEL13524.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-Cer4]
 gi|228675551|gb|EEL30763.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15]
 gi|296322111|gb|ADH05039.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
          Length = 533

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 159/381 (41%), Positives = 238/381 (62%), Gaps = 8/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  
Sbjct: 4   FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    +++ PTRELA QV +   K GK+  + +  + GG     Q + L++ 
Sbjct: 64  VDTHKESVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLL
Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+  P+ I+V     T   I+  ++    Q  KK  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA+
Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357

Query: 363 LIEKKVDWLNGDLSSLNPPLE 383
             ++K+D +  D  +L+  LE
Sbjct: 358 TTKRKMDRM--DAPTLDEALE 376


>gi|307308978|ref|ZP_07588661.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
 gi|306900612|gb|EFN31225.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 504

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 155/374 (41%), Positives = 229/374 (61%), Gaps = 4/374 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +LGLS  +V  +   G+ KPTPIQ + IPLVL+ HD+ G+AQTGTGKTA+F LPM+  
Sbjct: 4   FKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIEK 63

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + +  R   R  R L+L PTREL  Q+A N + + K   L + L++GG+    Q ++L 
Sbjct: 64  LVADGRRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQLA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+LD  +R  + +     LV+DEAD+MLD+GFI  ++ I+ LVP  RQT
Sbjct: 124 RGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKNRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + +++  +L +P ++EV+ P   A+ +E        +  K   L Q L  
Sbjct: 184 LLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQTLTA 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D +   +IF   K     L   L+  GF   +IHGN  Q  R + L  F++G I+++V
Sbjct: 244 NPDGLS--LIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVLV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DIP V HV+N+D+P   + Y+HRIGRT R GR G A    A ++I+ +  I
Sbjct: 302 ATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDI 361

Query: 361 EKLIEKKVDWLNGD 374
           EKL+  ++   +G+
Sbjct: 362 EKLMGIQIAVASGE 375


>gi|253999447|ref|YP_003051510.1| DEAD/DEAH box helicase domain-containing protein [Methylovorus sp.
           SIP3-4]
 gi|253986126|gb|ACT50983.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. SIP3-4]
          Length = 468

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 153/370 (41%), Positives = 228/370 (61%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P ++ A+ +AGY  PTPIQ + IP VL  HD+   AQTGTGKTA+F LP L +
Sbjct: 5   FETLNLHPSILRALEEAGYSTPTPIQAQAIPEVLAGHDLMASAQTGTGKTAAFTLPALNL 64

Query: 63  LEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L     ++ R PR L+L PTRELAAQV D   KYGK        ++GG+P+  QNK L +
Sbjct: 65  LADIHPSKSRGPRILVLTPTRELAAQVNDAARKYGKFMRARTVSIVGGMPYPLQNKLLSQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+L+ TPGR+LDH  RG++ M+ +++L++DEADRMLDMGF+P I+ I   +P  RQTL
Sbjct: 125 PLDILVATPGRLLDHMERGRIDMSRLQMLILDEADRMLDMGFMPDIERINEALPRERQTL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQLL 239
           +FSAT    +  +++  L++PK I++         IE    FV      + K  LL+ LL
Sbjct: 185 MFSATFEGPIANIAKTLLKDPKVIQIAAQKEKHANIEQRLHFV---DDMNHKNKLLEHLL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + D +   I+F + K++   L   L   G    A+HG++ Q +R + L+  + G ++++
Sbjct: 242 IAPD-VNQAIVFTSTKRHADLLAEDLYAAGHKSAALHGDMTQGARNRTLTKLRHGDVRVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HV N+D+P  AE+Y+HRIGRTGRAG  G A +  +  D   +  
Sbjct: 301 VATDVAARGIDVQGITHVINYDLPKFAEDYVHRIGRTGRAGNTGVAVSFASHADRHQLRK 360

Query: 360 IEKLIEKKVD 369
           IE+   ++++
Sbjct: 361 IEQYTGQRIE 370


>gi|30260423|ref|NP_842800.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47525504|ref|YP_016853.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47567484|ref|ZP_00238196.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|49183266|ref|YP_026518.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|49479130|ref|YP_034574.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|65317675|ref|ZP_00390634.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|118475995|ref|YP_893146.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|165871548|ref|ZP_02216194.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167634144|ref|ZP_02392466.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|167640350|ref|ZP_02398615.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170687759|ref|ZP_02878974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|170707898|ref|ZP_02898348.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|177653423|ref|ZP_02935633.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190567376|ref|ZP_03020290.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|196035956|ref|ZP_03103357.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196041156|ref|ZP_03108452.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|196046212|ref|ZP_03113439.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|218901440|ref|YP_002449274.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|225862289|ref|YP_002747667.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227812915|ref|YP_002812924.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228912978|ref|ZP_04076622.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228925493|ref|ZP_04088587.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228931740|ref|ZP_04094641.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228983493|ref|ZP_04143703.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229089370|ref|ZP_04220646.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42]
 gi|229119903|ref|ZP_04249162.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201]
 gi|229154007|ref|ZP_04282136.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           4342]
 gi|229182634|ref|ZP_04309880.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1]
 gi|229604746|ref|YP_002864874.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254686589|ref|ZP_05150448.1| DEAD/DEAH box helicase [Bacillus anthracis str. CNEVA-9066]
 gi|254723571|ref|ZP_05185358.1| DEAD/DEAH box helicase [Bacillus anthracis str. A1055]
 gi|254734933|ref|ZP_05192645.1| DEAD/DEAH box helicase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254739718|ref|ZP_05197411.1| DEAD/DEAH box helicase [Bacillus anthracis str. Kruger B]
 gi|254754911|ref|ZP_05206946.1| DEAD/DEAH box helicase [Bacillus anthracis str. Vollum]
 gi|301051970|ref|YP_003790181.1| DEAD/DEAH box helicase [Bacillus anthracis CI]
 gi|81696998|sp|Q6HPE6|CSHA_BACHK RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|81715465|sp|Q81VG0|CSHA_BACAN RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|134039177|sp|A0R8U6|CSHA_BACAH RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|30253744|gb|AAP24286.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47500652|gb|AAT29328.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|47555886|gb|EAL14225.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|49177193|gb|AAT52569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|49330686|gb|AAT61332.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|118415220|gb|ABK83639.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis str. Al Hakam]
 gi|164712652|gb|EDR18183.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167511752|gb|EDR87133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|167530458|gb|EDR93173.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170127256|gb|EDS96133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|170668286|gb|EDT19034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|172081463|gb|EDT66536.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190561503|gb|EDV15474.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|195991325|gb|EDX55292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196022957|gb|EDX61637.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|196028091|gb|EDX66702.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|218539043|gb|ACK91441.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|225790192|gb|ACO30409.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227005398|gb|ACP15141.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228600842|gb|EEK58416.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1]
 gi|228629528|gb|EEK86226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           4342]
 gi|228663560|gb|EEL19141.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201]
 gi|228693970|gb|EEL47657.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42]
 gi|228776237|gb|EEM24593.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228827920|gb|EEM73653.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228834238|gb|EEM79781.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228846673|gb|EEM91681.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229269154|gb|ACQ50791.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|300374139|gb|ADK03043.1| DEAD/DEAH box helicase [Bacillus cereus biovar anthracis str. CI]
          Length = 528

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 159/381 (41%), Positives = 238/381 (62%), Gaps = 8/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  
Sbjct: 4   FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    +++ PTRELA QV +   K GK+  + +  + GG     Q + L++ 
Sbjct: 64  VDTHKESVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLL
Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+  P+ I+V     T   I+  ++    Q  KK  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA+
Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357

Query: 363 LIEKKVDWLNGDLSSLNPPLE 383
             ++K+D +  D  +L+  LE
Sbjct: 358 TTKRKMDRM--DAPTLDEALE 376


>gi|260584701|ref|ZP_05852447.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
           elegans ATCC 700633]
 gi|260157724|gb|EEW92794.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
           elegans ATCC 700633]
          Length = 509

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 158/383 (41%), Positives = 237/383 (61%), Gaps = 13/383 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ ++   G+ + TPIQ +TIPL L   DV G AQTGTGKTASF LPML
Sbjct: 1   MKFNELGLDSALLESIEKMGFEEATPIQSQTIPLALAGKDVIGQAQTGTGKTASFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +K   R R  + L++ PTRELA Q  +   + GK+  + V  + GG     Q ++L+
Sbjct: 61  ---QKINLRNRKVQGLVIAPTRELAIQTQEELYRLGKDKKIHVQAVYGGADIGRQIRQLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH +R  L ++NIE LV+DEAD ML+MGF+  I++I  LVP  RQT
Sbjct: 118 DQPHIVVGTPGRLLDHISRKTLRLDNIETLVLDEADEMLNMGFLEDIESIIKLVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D+++++   F++ P+ + + +   TA  I+  FV    +  +K  ++ +LL 
Sbjct: 178 LLFSATMPDDIKRIGVQFMKEPEHVRIKSSEMTATLIDQYFVK--CKDFEKFDIMTRLLD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q T +  I+F   K+ V  L   LE +GF    IHG++ Q+ RM +L +FK   + ++V
Sbjct: 236 VQ-TPELTIVFGRTKRRVDELARGLEMRGFRAEGIHGDLSQQKRMSVLRDFKNNHLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQEGMSVTFVTPNEMDYLRVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           E L  K+       +++L PP +
Sbjct: 355 EDLTRKR-------MTALRPPTQ 370


>gi|160888927|ref|ZP_02069930.1| hypothetical protein BACUNI_01347 [Bacteroides uniformis ATCC 8492]
 gi|270293944|ref|ZP_06200146.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. D20]
 gi|156861394|gb|EDO54825.1| hypothetical protein BACUNI_01347 [Bacteroides uniformis ATCC 8492]
 gi|270275411|gb|EFA21271.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. D20]
          Length = 425

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 156/368 (42%), Positives = 232/368 (63%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+ + GY  PTPIQ K+IP++LQ  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MTFENLNLIEPILKALQEEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K   R  + + LIL PTRELA Q+ ++F  YGK   L  A++ GG+  + Q  +L+
Sbjct: 61  QKLYKTDNRKSI-KALILTPTRELAIQIGESFSAYGKYTGLRHAVIFGGVGQKPQTDELK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +L+ TPGR+ D  N+G + +  +E  V+DEADRMLDMGFI  I+ I  L+P  RQT
Sbjct: 120 RGVQILVATPGRLQDLVNQGFINLKALEFFVLDEADRMLDMGFIHDIRRILKLLPAKRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++ ++ + L +P+++EV   SST +TI       + +  +K  LL  LL+
Sbjct: 180 LFFSATMPPEIETLANSMLTHPEKVEVTPASSTVDTISQSVY--FVEKKEKKDLLIHLLK 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   +K+ +IF   K     L  +L K G    AIHGN  Q +R + L+ FK   +++++
Sbjct: 238 N-PAIKSVLIFTRTKYGADKLARTLSKSGIRAEAIHGNKSQNARQRALTGFKNHELRVLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+++PN  E Y+HRIGRTGRAG  G A +    E++ ++  I
Sbjct: 297 ATDIAARGIDVDQLSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCESEELPYLKDI 356

Query: 361 EKLIEKKV 368
           +KLI K +
Sbjct: 357 QKLIGKSI 364


>gi|83945168|ref|ZP_00957517.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
 gi|83851338|gb|EAP89194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
          Length = 466

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 160/389 (41%), Positives = 233/389 (59%), Gaps = 10/389 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D GL+P ++ A+ + GY  PTPIQ + IP V++ HD+ G+AQTGTGKTA+FVLP++  
Sbjct: 21  FTDFGLNPSILTAISEQGYETPTPIQARAIPAVMKGHDLIGLAQTGTGKTAAFVLPLVHQ 80

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + E  +A  R  R LIL PTRELAAQ+ +  + Y  +  LT  ++ GG+    Q K L 
Sbjct: 81  LLAENKQAPGRSCRALILAPTRELAAQIEEQVKAYTAHTKLTSTVVFGGVKAGPQIKALA 140

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+LDH    K  ++    +++DEAD+MLD+GFIP I+ +  +V   RQT
Sbjct: 141 RGVDILVATPGRLLDHLGERKARLDLTRFVILDEADQMLDLGFIPAIRKLLRMVGEERQT 200

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSATM   +++++++FL +P+ + V  PS   E I+     T A  +K  AL+   L 
Sbjct: 201 LMFSATMAPAIRQLADDFLDHPETVAVTPPSKPVERIDQKVFYTEAS-AKPDALID--LM 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +  K  IIF   K     +   L K G    AIHG+  Q  R + L  FK G   ++V
Sbjct: 258 APEAGKRAIIFTRTKYGADRVAKRLVKYGHKANAIHGDKSQNQRTRALDAFKSGEAPVLV 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V  V N+++PN AENY+HRIGRT RAG  G+A  L A ++   +  I
Sbjct: 318 ATDIAARGIDVDGVDLVVNYELPNVAENYVHRIGRTARAGASGRAVALCAPDERVMLKDI 377

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
           EK +   +  LN       PP+ K + A+
Sbjct: 378 EKTMGVTIQGLND-----APPMPKGEAAK 401


>gi|42779348|ref|NP_976595.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987]
 gi|206977074|ref|ZP_03237974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217957807|ref|YP_002336351.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|222094007|ref|YP_002528058.1| dead/deah box helicase [Bacillus cereus Q1]
 gi|229137077|ref|ZP_04265701.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST26]
 gi|229194624|ref|ZP_04321421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293]
 gi|81700027|sp|Q73EU1|CSHA_BACC1 RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|42735263|gb|AAS39203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           ATCC 10987]
 gi|206744723|gb|EDZ56130.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217064501|gb|ACJ78751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|221238056|gb|ACM10766.1| DEAD/DEAH box helicase [Bacillus cereus Q1]
 gi|228588845|gb|EEK46866.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293]
 gi|228646384|gb|EEL02594.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST26]
 gi|324324246|gb|ADY19506.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 525

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 159/381 (41%), Positives = 238/381 (62%), Gaps = 8/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  
Sbjct: 4   FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    +++ PTRELA QV +   K GK+  + +  + GG     Q + L++ 
Sbjct: 64  VDTHKESVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLL
Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+  P+ I+V     T   I+  ++    Q  KK  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA+
Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357

Query: 363 LIEKKVDWLNGDLSSLNPPLE 383
             ++K+D +  D  +L+  LE
Sbjct: 358 TTKRKMDRM--DAPTLDEALE 376


>gi|16264922|ref|NP_437714.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
           1021]
 gi|15141061|emb|CAC49574.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
           1021]
          Length = 503

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 155/374 (41%), Positives = 229/374 (61%), Gaps = 4/374 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +LGLS  +V  +   G+ KPTPIQ + IPLVL+ HD+ G+AQTGTGKTA+F LPM+  
Sbjct: 4   FKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIEK 63

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + +  R   R  R L+L PTREL  Q+A N + + K   L + L++GG+    Q ++L 
Sbjct: 64  LVADGRRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQLA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+LD  +R  + +     LV+DEAD+MLD+GFI  ++ I+ LVP  RQT
Sbjct: 124 RGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKNRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + +++  +L +P ++EV+ P   A+ +E        +  K   L Q L  
Sbjct: 184 LLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQTLTA 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D +   +IF   K     L   L+  GF   +IHGN  Q  R + L  F++G I+++V
Sbjct: 244 NPDGLS--LIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVLV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DIP V HV+N+D+P   + Y+HRIGRT R GR G A    A ++I+ +  I
Sbjct: 302 ATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDI 361

Query: 361 EKLIEKKVDWLNGD 374
           EKL+  ++   +G+
Sbjct: 362 EKLMGIQIAVASGE 375


>gi|167585532|ref|ZP_02377920.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
          Length = 408

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 229/372 (61%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFESLGLAEPLVKAVNELGYTSPTPIQSQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L    A      R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTFYAEHHHAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L RG D+++ TPGR+LDH  +  + ++ ++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALRRGVDIVVATPGRLLDHMQQKTIDLSQLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAET+            +K  LL 
Sbjct: 181 RRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPV--DRDRKRELLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++  +  +  ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI++++
Sbjct: 358 LRDIERLIKREI 369


>gi|77460208|ref|YP_349715.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1]
 gi|77384211|gb|ABA75724.1| cold-shock dead-box protein A [Pseudomonas fluorescens Pf0-1]
          Length = 557

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 149/367 (40%), Positives = 234/367 (63%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPSK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLQTVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++PK +++ + + T   IE   +  +A   +K + +  LL+ 
Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQSKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I+F   K+  ++L  +L+ +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 243 ED-FDALIMFVRTKQATLDLASALDAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKV 368
           ++  +KV
Sbjct: 362 RVTGQKV 368


>gi|319637745|ref|ZP_07992511.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
 gi|317400900|gb|EFV81555.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
          Length = 463

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 172/435 (39%), Positives = 262/435 (60%), Gaps = 22/435 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+ D GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 4   FSSLGLGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 63

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 64  LKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDKQTA 123

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 124 DLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 183

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A  A   KK  LL++
Sbjct: 184 RQTLLFSATFSPPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDA--LKKRNLLER 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+     M   I+FC  K++V  +   L ++  +  +IHG+  Q+SR++ L+ FKEGT++
Sbjct: 242 LIVDLH-MNQVIVFCKTKQSVDQVTRDLVRRHIAAQSIHGDKSQQSRLETLNAFKEGTLR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ K + K  
Sbjct: 301 VLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMF 360

Query: 358 DAIEKLI--EKKVDWLNG----DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           +AI++L   + KV+ + G      S+ N    +    QHN +R        S   DR K+
Sbjct: 361 EAIKELTGSDLKVERIEGFEPHWWSNSNQDEAETHQNQHNDSR--------SRRDDRNKR 412

Query: 412 NYSSQKSHIPLKESE 426
           +  + KS    K++E
Sbjct: 413 SEYASKSDKNSKKTE 427


>gi|116872279|ref|YP_849060.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741157|emb|CAK20277.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 518

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 157/371 (42%), Positives = 233/371 (62%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++ GL  K+V +V   G+ + TPIQ KTIPL L+  D+ G AQTGTGKTA+F LPM+  
Sbjct: 4   FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIHK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++    V+    LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++ 
Sbjct: 64  IDQKSNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L ++++E LV+DEAD ML+MGFI  I+ I   VP  RQTLL
Sbjct: 121 PQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D ++++ E F+ +P+ I +     TA  IE  FV  + +  +K  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+F   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA+
Sbjct: 239 -APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E+
Sbjct: 298 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 357

Query: 363 LIEKKVDWLNG 373
             +K++  L  
Sbjct: 358 TTKKRMQPLQA 368


>gi|146276411|ref|YP_001166570.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145554652|gb|ABP69265.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 453

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 155/375 (41%), Positives = 226/375 (60%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGLS K++  +  A + K TPIQ++ IP V+Q  D+ G+AQTGTGKT +F LP+L 
Sbjct: 11  DFSTLGLSEKILQGLAKAQFTKATPIQVEAIPHVMQGRDLMGLAQTGTGKTLAFGLPLLH 70

Query: 62  ILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L  G      PRT   LIL PTREL +Q+A N E + K   + V  + GG     Q ++
Sbjct: 71  RL-LGVGHPPPPRTIRALILAPTRELVSQIAANLELFTKGTPVKVVTITGGASINRQTER 129

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RGAD+++ TPGR++D  +R  +++++   LV+DEAD+MLDMGFI  ++ I   +P  R
Sbjct: 130 LARGADIMVATPGRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPLKR 189

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM   +++++  FL+ P R++V  P    E I       +     K  LL+  
Sbjct: 190 QTLLFSATMPKLIEELAHTFLREPVRVQVAPPGKPVEKIAQGV--HFIPQGDKAKLLESY 247

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L      +  ++F   K     L   L   GF   +IHGN  Q  R + L+ F++GT+ +
Sbjct: 248 LLKHPG-EQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGTLDV 306

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DIP V HV+N+D+PN  ENY+HRIGRT RAG  G A   VA  ++    
Sbjct: 307 LVATDVAARGIDIPGVRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVAPAEMDEFR 366

Query: 359 AIEKLIEKKVDWLNG 373
           A+EKL+++ +  + G
Sbjct: 367 AVEKLLKQPIPVIGG 381


>gi|313201469|ref|YP_004040127.1| dead/deah box helicase domain-containing protein [Methylovorus sp.
           MP688]
 gi|312440785|gb|ADQ84891.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688]
          Length = 468

 Score =  299 bits (766), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 153/370 (41%), Positives = 228/370 (61%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P ++ A+ +AGY  PTPIQ + IP VL  HD+   AQTGTGKTA+F LP L +
Sbjct: 5   FETLNLHPSILRALEEAGYSTPTPIQAQAIPEVLAGHDLMASAQTGTGKTAAFTLPALNL 64

Query: 63  LEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L     ++ R PR L+L PTRELAAQV D   KYGK        ++GG+P+  QNK L +
Sbjct: 65  LADIHPSKSRGPRILVLTPTRELAAQVNDAARKYGKFMRARTVSIVGGMPYPLQNKLLSQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+L+ TPGR+LDH  RG++ M+ +++L++DEADRMLDMGF+P I+ I   +P  RQTL
Sbjct: 125 PLDILVATPGRLLDHMERGRIDMSRLQMLILDEADRMLDMGFMPDIERINEALPRERQTL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQLL 239
           +FSAT    +  +++  L++PK I++         IE    FV      + K  LL+ LL
Sbjct: 185 MFSATFEGPIANIAKTLLKDPKVIQIAAQKEKHANIEQRLHFV---DDMNHKNKLLEHLL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + D +   I+F + K++   L   L   G    A+HG++ Q +R + L+  + G ++++
Sbjct: 242 IAPD-VNQAIVFTSTKRHADLLAEDLYAAGHKSAALHGDMTQGARNRTLTKLRHGDVRVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HV N+D+P  AE+Y+HRIGRTGRAG  G A +  +  D   +  
Sbjct: 301 VATDVAARGIDVQGITHVINYDLPKFAEDYVHRIGRTGRAGNTGVAVSFASHADRHQLRK 360

Query: 360 IEKLIEKKVD 369
           IE+   ++++
Sbjct: 361 IEQYTGQRIE 370


>gi|229015638|ref|ZP_04172628.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273]
 gi|229021830|ref|ZP_04178406.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272]
 gi|228739470|gb|EEL89890.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272]
 gi|228745658|gb|EEL95670.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273]
          Length = 530

 Score =  299 bits (766), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 160/381 (41%), Positives = 236/381 (61%), Gaps = 8/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  
Sbjct: 4   FRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL-- 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +K   R    + +++ PTRELA QV +   K GK+  + +  + GG     Q + L++ 
Sbjct: 62  -DKVDTRKEAVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLL
Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+  P+ I+V     T   I+  ++    Q  KK  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG I+++VA+
Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357

Query: 363 LIEKKVDWLNGDLSSLNPPLE 383
             ++KVD +  +  +L+  LE
Sbjct: 358 TTKRKVDRM--EAPTLDEALE 376


>gi|157376496|ref|YP_001475096.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157318870|gb|ABV37968.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 419

 Score =  299 bits (766), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 171/410 (41%), Positives = 241/410 (58%), Gaps = 18/410 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ + LS K++  + + GY  PTPIQ   IP++L   D+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFSSMALSQKLITLLSELGYSSPTPIQAHAIPVILAGQDIMAGAQTGTGKTAAFALPIL 60

Query: 61  TILE---------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
             L          K    ++  R L+L PTRELA QV  +F KYGK+  L  A++ GG+ 
Sbjct: 61  QKLSECDVELSDTKQTVSLKPVRALVLTPTRELALQVNQSFAKYGKDSGLNTAIVYGGVS 120

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            +AQ   L+ G D+L+ TPGR+LDH  RG L +  +  LV DEADRMLDMGF   I  I 
Sbjct: 121 IDAQADALKAGVDILVATPGRLLDHLRRGSLTLKQLNFLVFDEADRMLDMGFKDEINAIL 180

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
             VP  RQTLLFSAT    +  +S+   Q+PK IEV+  ++ A  +E    A  A   +K
Sbjct: 181 KQVPSKRQTLLFSATFDPSVFALSKRLQQDPKLIEVDKRNTLAAKVEQVVYAVDA--DRK 238

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L+  L++S+   +  +IF  +K+   N+   + K G    A HG++ Q  R K L  F
Sbjct: 239 SELICHLVKSK-LWQQVLIFSRKKQGADNIAAKMVKAGIKAQAFHGDLSQAVREKALQQF 297

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K+G IQ++VA+D+AARGLD+ ++  V N+++P  AE+YIHRIGRTGRAG  G A TL ++
Sbjct: 298 KQGEIQVLVATDVAARGLDVEELKVVVNYELPFIAEDYIHRIGRTGRAGNAGLAITLYSE 357

Query: 352 EDIKHIDAIEKLIEKKV--DWLNG---DLSSLNPPLEK-IDIAQHNHARK 395
           ED   ++ IE L++ ++   WL G   DL+   P   K    AQ   A++
Sbjct: 358 EDALLLEEIEALLDSRLPQQWLPGFEPDLTKAEPVTRKNSKAAQKQRAKR 407


>gi|163938237|ref|YP_001643121.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|229131241|ref|ZP_04260147.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST196]
 gi|163860434|gb|ABY41493.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
 gi|228652232|gb|EEL08163.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST196]
          Length = 538

 Score =  299 bits (766), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 160/381 (41%), Positives = 237/381 (62%), Gaps = 8/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  
Sbjct: 4   FRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    +++ PTRELA QV +   K GK+  + +  + GG     Q + L++ 
Sbjct: 64  VDTNKDAVQ---GIVIAPTRELAIQVGEELYKLGKHKRVRILPIYGGQDINRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLL
Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+  P+ I+V     T   I+  ++    Q  KK  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  IIF   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG I+++VA+
Sbjct: 239 -SPELAIIFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357

Query: 363 LIEKKVDWLNGDLSSLNPPLE 383
             ++KVD +  +  +L+  LE
Sbjct: 358 TTKRKVDRM--EAPTLDEALE 376


>gi|327540357|gb|EGF26943.1| cold-shock deAd box protein a [Rhodopirellula baltica WH47]
          Length = 862

 Score =  299 bits (766), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 150/371 (40%), Positives = 235/371 (63%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L  +V  AV  +GY KPTPIQ + IP +L   DV   +QTGTGKTA+F LP+L+ 
Sbjct: 237 FRDLDLRAEVQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPILSR 296

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++    R R P+ L+L PTRELA QVA +F KYG + +   VA + GG  +E Q K+L R
Sbjct: 297 VD---VRSRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRR 353

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L + +++ LV+DEAD ML+MGF+  +Q +    P  RQ  
Sbjct: 354 GVQVVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQVA 413

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++K+++ +L +P RI + + + TA ++     A +     K   L ++L+ 
Sbjct: 414 LFSATLPKPIRKIADEYLNDPARITIKSKTITAASVRQR--ALFVSPRDKIDALTRILEV 471

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++T    I+F   K + +++   L +QGFS  A++G++ Q+ R + +   K G + ++VA
Sbjct: 472 EET-DGVIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVA 530

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFNFD+P+ +E+Y+HRIGRTGRAGR G+A   +     + +  IE
Sbjct: 531 TDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQLRFIE 590

Query: 362 KLIEKKVDWLN 372
              ++ ++ ++
Sbjct: 591 NTTKQPIEIID 601


>gi|254756954|ref|ZP_05208982.1| DEAD/DEAH box helicase [Bacillus anthracis str. Australia 94]
          Length = 516

 Score =  299 bits (766), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 159/381 (41%), Positives = 238/381 (62%), Gaps = 8/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  
Sbjct: 4   FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    +++ PTRELA QV +   K GK+  + +  + GG     Q + L++ 
Sbjct: 64  VDTHKESVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLL
Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+  P+ I+V     T   I+  ++    Q  KK  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA+
Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357

Query: 363 LIEKKVDWLNGDLSSLNPPLE 383
             ++K+D +  D  +L+  LE
Sbjct: 358 TTKRKMDRM--DAPTLDEALE 376


>gi|307319802|ref|ZP_07599226.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
 gi|306894533|gb|EFN25295.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
          Length = 504

 Score =  299 bits (766), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 155/374 (41%), Positives = 229/374 (61%), Gaps = 4/374 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +LGLS  +V  +   G+ KPTPIQ + IPLVL+ HD+ G+AQTGTGKTA+F LPM+  
Sbjct: 4   FKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIEK 63

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + +  R   R  R L+L PTREL  Q+A N + + K   L + L++GG+    Q ++L 
Sbjct: 64  LVADGRRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQLA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+LD  +R  + +     LV+DEAD+MLD+GFI  ++ I+ LVP  RQT
Sbjct: 124 RGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKNRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + +++  +L +P ++EV+ P   A+ +E        +  K   L Q L  
Sbjct: 184 LLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQTLTA 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D +   +IF   K     L   L+  GF   +IHGN  Q  R + L  F++G I+++V
Sbjct: 244 NPDGLS--LIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVLV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DIP V HV+N+D+P   + Y+HRIGRT R GR G A    A ++I+ +  I
Sbjct: 302 ATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDI 361

Query: 361 EKLIEKKVDWLNGD 374
           EKL+  ++   +G+
Sbjct: 362 EKLMGIQIAVASGE 375


>gi|325982424|ref|YP_004294826.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
           AL212]
 gi|325531943|gb|ADZ26664.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
          Length = 476

 Score =  299 bits (766), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 172/441 (39%), Positives = 258/441 (58%), Gaps = 30/441 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGLS  ++ A+ + GY  PTPIQ + IP++L+  DV G AQTGTGKTA F LPML
Sbjct: 5   ISFEQLGLSTDLLRAISEQGYTNPTPIQQQAIPIILKGFDVMGGAQTGTGKTAGFTLPML 64

Query: 61  TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             LE        P     R LIL PTRELA QV ++   YGK   L  A++  G+  + Q
Sbjct: 65  QKLESHANSSTSPAKHPTRALILVPTRELAIQVYESVRAYGKYVALKSAVIYDGVNIDVQ 124

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              +  G ++L+ TPGR+LDH  +  L+++ IEIL++DEADRMLDMGF+P I+ I  ++P
Sbjct: 125 IAAIRSGVEILVATPGRLLDHLQQKNLILSKIEILILDEADRMLDMGFLPDIKQIIQMLP 184

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCAL 234
             RQ L+FSAT ++E++K++   L++P  IEV   +S ++ I H     Y+  SK K   
Sbjct: 185 DQRQNLMFSATFSEEIKKLAGKILKSPILIEVAKQNSVSDLISHI---VYSVESKNKQEF 241

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  +++ ++ ++  +IF   K    +L   L  +      IHG+ +Q  R + L NFK G
Sbjct: 242 LIDMIKKKN-LQQVLIFTRTKHGADHLAQKLNSRDILSSVIHGDRNQLQRTQALDNFKCG 300

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+AARGLDI ++ HV NF++PN  E+Y+HRIGRTGRAG  G A + V++E+ 
Sbjct: 301 LIRILVATDVAARGLDIEELTHVINFELPNNPEDYVHRIGRTGRAGAKGFAISFVSREET 360

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN--NPIPQKSTGFDRRKKN 412
             +  IE+L+                   KI + + N   KN     P K+   + +KK+
Sbjct: 361 VLLGGIERLLGI-----------------KIQVEESNSGLKNQQTEFPNKTKIIEEQKKS 403

Query: 413 YS-SQKSHIPLKESEKISKLQ 432
            + S K+    K S++I K++
Sbjct: 404 RAFSFKNESLSKRSKRIEKME 424


>gi|301166259|emb|CBW25834.1| putative ATP-dependent RNA helicase [Bacteriovorax marinus SJ]
          Length = 431

 Score =  299 bits (766), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 159/375 (42%), Positives = 229/375 (61%), Gaps = 6/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL LS K++  + D GY  PT IQ + IPL+L+  D+ GIAQTG+GKT +F +PM+  
Sbjct: 4   FKDLKLSSKLLKTLADKGYSTPTDIQREAIPLILEGRDIQGIAQTGSGKTGAFSIPMIEN 63

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L + +   + +  R LIL PTRELA Q+    E Y K  NL+ A++ GG     Q +KL 
Sbjct: 64  LSRSKQVVKAKRARALILTPTRELANQINGQVEIYSKGMNLSSAVIFGGDGPLNQVRKLA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+LI TPGR+LD   RG + ++ +E  V+DEADRMLDMGFI  I+ I   +P  RQT
Sbjct: 124 TGVDLLIATPGRLLDFLQRGHIKLDELETFVLDEADRMLDMGFIKDIEKIIERLPKKRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  ++ K++   L  PK IEV+ PS+  E+I    +  +    +K  LL++++ 
Sbjct: 184 LFFSATMPKDISKLASTILTRPKIIEVSPPSTPVESIAQYLI--HIDRVQKPKLLKKII- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ I+F   K     +C  L K G    +IH N  Q +R K L+ F+   I+ +V
Sbjct: 241 NESVSESVIVFTRTKYGADRVCKHLMKAGIESSSIHSNRSQGAREKALAAFRNKKIKALV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+DVP  AE+YIHRIGRT RAG+ G A+T     + K + A+
Sbjct: 301 ATDIAARGIDVDGISHVINYDVPLEAESYIHRIGRTARAGKSGVAYTFCDPAETKSLKAV 360

Query: 361 EKLIEKKVDWLNGDL 375
           EKL+  K+  +N D 
Sbjct: 361 EKLLGFKIK-VNSDF 374


>gi|54308937|ref|YP_129957.1| ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46913367|emb|CAG20155.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Photobacterium
           profundum SS9]
          Length = 422

 Score =  299 bits (766), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 166/384 (43%), Positives = 238/384 (61%), Gaps = 14/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+ ++V  V + G+  PTPIQ + IP VL   D+   AQTGTGKTA+F LPM+
Sbjct: 1   MSFQALGLNTQLVDTVTELGFKTPTPIQEQAIPQVLAGDDIMAGAQTGTGKTAAFGLPMI 60

Query: 61  TIL------EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
             L      E     ++ P   R L+L PTRELA QV D+   Y KN ++ VA+  GG  
Sbjct: 61  QRLLASQQSEHDEGYIKKPEAIRALVLTPTRELAQQVHDSILAYSKNTSIKVAVAYGGTS 120

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q K L+ G D+LI TPGR+LDH   G + ++ IE LV+DEADRMLDMGF+  I+ I 
Sbjct: 121 MGVQVKALKSGVDILIATPGRLLDHAFTGTVDLSKIECLVLDEADRMLDMGFVVDIKRIM 180

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
             +P  RQTLLFSAT +++++K++ + L +PK IEV   + TAE++            +K
Sbjct: 181 QRMPRKRQTLLFSATFSNQVKKLAYDILADPKLIEVTPENITAESVTQMVYPV--DKHRK 238

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL  L+ S++     +IF   K+    L   L   G    +I+G+  Q +R + LS+F
Sbjct: 239 RELLSYLIGSRN-WNQVLIFTKTKQGSDELAKELILDGIKAVSINGDKSQGARQRALSDF 297

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           KEG ++ MVA+D+AARGLDI  +G+V NFD+P +AE+Y+HRIGRTGRAG  G A +L++ 
Sbjct: 298 KEGKVRAMVATDVAARGLDIEQLGYVVNFDLPFQAEDYVHRIGRTGRAGLTGSAISLMSI 357

Query: 352 EDIKHIDAIEKLIEKKV--DWLNG 373
           ++   + AIE+L++ ++  +WL G
Sbjct: 358 DEEWALRAIEELLDTRLPQEWLEG 381


>gi|16802907|ref|NP_464392.1| hypothetical protein lmo0866 [Listeria monocytogenes EGD-e]
 gi|224499403|ref|ZP_03667752.1| hypothetical protein LmonF1_06772 [Listeria monocytogenes Finland
           1988]
 gi|224503166|ref|ZP_03671473.1| hypothetical protein LmonFR_11698 [Listeria monocytogenes FSL
           R2-561]
 gi|254827809|ref|ZP_05232496.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N3-165]
 gi|254832169|ref|ZP_05236824.1| hypothetical protein Lmon1_12514 [Listeria monocytogenes 10403S]
 gi|254898962|ref|ZP_05258886.1| hypothetical protein LmonJ_04075 [Listeria monocytogenes J0161]
 gi|254911550|ref|ZP_05261562.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J2818]
 gi|254935876|ref|ZP_05267573.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes F6900]
 gi|16410269|emb|CAC98944.1| lmo0866 [Listeria monocytogenes EGD-e]
 gi|258600190|gb|EEW13515.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N3-165]
 gi|258608464|gb|EEW21072.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes F6900]
 gi|293589496|gb|EFF97830.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J2818]
          Length = 520

 Score =  299 bits (766), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 157/371 (42%), Positives = 233/371 (62%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++ GL  K+V +V   G+ + TPIQ KTIPL L+  D+ G AQTGTGKTA+F LPM+  
Sbjct: 4   FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIHK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++    V+    LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++ 
Sbjct: 64  IDQKSNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L ++++E LV+DEAD ML+MGFI  I+ I   VP  RQTLL
Sbjct: 121 PQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D ++++ E F+ +P+ I +     TA  IE  FV  + +  +K  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+F   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA+
Sbjct: 239 -APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E+
Sbjct: 298 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 357

Query: 363 LIEKKVDWLNG 373
             +K++  L  
Sbjct: 358 TTKKRMQPLQA 368


>gi|332991693|gb|AEF01748.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2]
          Length = 457

 Score =  299 bits (766), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 157/367 (42%), Positives = 226/367 (61%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+  ++ A+   GY  P+PIQ + IP++L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFSELGLAAPLLQAIEKQGYTTPSPIQQQAIPIILEGKDILAAAQTGTGKTAGFSLPLL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  GR A     R LIL PTRELAAQV +N + + +   L  A++ GG+    Q K L
Sbjct: 61  HRLLDGRPAASNCVRALILTPTRELAAQVEENVKSFSEFLPLKTAVVFGGVGINPQMKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVLI TPGR+LD + +  +  + +E LV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 RSGVDVLIATPGRLLDLYQQNAVKFSQLETLVLDEADRMLDMGFIHDIKRILKLLPTKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT + E+  +++    NP+++     ++T ET++   V      SKK A L  L+
Sbjct: 181 TLLFSATFSSEITTLAQTITNNPEKVSTAPANTTVETVQQHLVPI--DKSKKTAALISLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+  K  ++F   K     +   L +      AIHGN  Q +R K LS FK G I ++
Sbjct: 239 K-QNGWKQVLVFSRTKHGANRIADKLSRARIPSAAIHGNKSQGARTKALSEFKSGEIDVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI ++  V N D+PN   +Y+HRIGRTGRAG  G+A++ V+ +++  +  
Sbjct: 298 VATDIAARGIDINELPIVINIDLPNTPADYVHRIGRTGRAGASGQAWSFVSIDELDQLKD 357

Query: 360 IEKLIEK 366
           IE LI++
Sbjct: 358 IETLIQQ 364


>gi|229159401|ref|ZP_04287421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803]
 gi|228624068|gb|EEK80874.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803]
          Length = 528

 Score =  299 bits (766), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 159/381 (41%), Positives = 237/381 (62%), Gaps = 8/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  
Sbjct: 4   FRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    +++ PTRELA QV +   K GK+  + +  + GG     Q + L++ 
Sbjct: 64  VDTNKEAVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLL
Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+  P+ I+V     T   I+  ++    Q  KK  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG I+++VA+
Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357

Query: 363 LIEKKVDWLNGDLSSLNPPLE 383
             ++KVD +  +  +L+  LE
Sbjct: 358 TTKRKVDRM--EAPTLDEALE 376


>gi|268680158|ref|YP_003304589.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618189|gb|ACZ12554.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 436

 Score =  299 bits (765), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 153/368 (41%), Positives = 227/368 (61%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +  AV + GY KPTP+Q K IPLVL+  DV   AQTGTGKTA++ LP+L
Sbjct: 1   MVFEKLGLSEPIRDAVRELGYTKPTPVQNKVIPLVLEGKDVMATAQTGTGKTAAYALPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            IL K   +    ++ R LIL PTRELA+QV  + + YGKN  L+ A + GG+ F  Q K
Sbjct: 61  HILNKKTQKSTTSKVVRALILVPTRELASQVGASVQAYGKNVPLSSAAIYGGVKFTPQAK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL++G D+LI TPGR+L+H   G + ++ +EI+V DEADR+LDMGF   +Q +  L P  
Sbjct: 121 KLDKGIDILIATPGRLLEHVKLGNVDLSRVEIVVFDEADRILDMGFWDEVQTLLGLFPKK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFS  ++  ++++SE  L+ P  + +N     A+ +E           +KC LL  
Sbjct: 181 RQTLLFSVGLSKSVKRLSEVSLKKPVTVAINNQGDFAKKVEQTLY--LVDKERKCELLSF 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++ + +     ++F   K++   +   L   G     +HG+     R + +  FKE  I+
Sbjct: 239 MIGTHN-WHQVLVFTKTKQSADEVGEYLNASGLKTLVLHGDKAHSKRTQAIHAFKENAIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A+RGLDI D+ +V N+++P  AE+Y HR GRTGRAG+ G+A +LVA+E+    
Sbjct: 298 VLVATDIASRGLDIEDLPYVINYELPGDAEDYTHRAGRTGRAGKEGRAISLVAQEEKNKF 357

Query: 358 DAIEKLIE 365
             IEK+++
Sbjct: 358 KEIEKILK 365


>gi|47094873|ref|ZP_00232487.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 1/2a
           F6854]
 gi|284801196|ref|YP_003413061.1| hypothetical protein LM5578_0946 [Listeria monocytogenes 08-5578]
 gi|284994338|ref|YP_003416106.1| hypothetical protein LM5923_0900 [Listeria monocytogenes 08-5923]
 gi|47016755|gb|EAL07674.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 1/2a
           F6854]
 gi|284056758|gb|ADB67699.1| hypothetical protein LM5578_0946 [Listeria monocytogenes 08-5578]
 gi|284059805|gb|ADB70744.1| hypothetical protein LM5923_0900 [Listeria monocytogenes 08-5923]
          Length = 522

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 157/371 (42%), Positives = 233/371 (62%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++ GL  K+V +V   G+ + TPIQ KTIPL L+  D+ G AQTGTGKTA+F LPM+  
Sbjct: 6   FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIHK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++    V+    LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++ 
Sbjct: 66  IDQKSNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L ++++E LV+DEAD ML+MGFI  I+ I   VP  RQTLL
Sbjct: 123 PQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D ++++ E F+ +P+ I +     TA  IE  FV  + +  +K  +L +LL  Q
Sbjct: 183 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+F   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA+
Sbjct: 241 -APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E+
Sbjct: 300 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 359

Query: 363 LIEKKVDWLNG 373
             +K++  L  
Sbjct: 360 TTKKRMQPLQA 370


>gi|313638753|gb|EFS03844.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL S4-171]
          Length = 525

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 159/371 (42%), Positives = 231/371 (62%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++ GL  K+V +V   G+ + TPIQ KTIPL L   D+ G AQTGTGKTA+F LPM+  
Sbjct: 4   FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++    V+    LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++ 
Sbjct: 64  IDQKSNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKF 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L + N+E LV+DEAD ML+MGFI  I+ I   VP  RQTLL
Sbjct: 121 PQIVVGTPGRILDHINRRTLKLENVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D ++++ E F+ +P+ I +     TA  IE  FV  + +  +K  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  IIF   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA+
Sbjct: 239 -APELAIIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E+
Sbjct: 298 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 357

Query: 363 LIEKKVDWLNG 373
             +K++  L  
Sbjct: 358 TTKKRMQPLQA 368


>gi|298293432|ref|YP_003695371.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
 gi|296929943|gb|ADH90752.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
          Length = 557

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 150/365 (41%), Positives = 229/365 (62%), Gaps = 5/365 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +LGL+  ++ A+ +A +  PTPIQ + +P VL   D+ GIAQTGTGKTA+F LP+L  
Sbjct: 9   FPELGLAEPILKALAEANHSTPTPIQAQAVPQVLAGRDLVGIAQTGTGKTAAFALPILHH 68

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + ++ R   R  R L+L PTREL+ Q+ ++F  YGK+   + AL IGG+P   Q + L 
Sbjct: 69  LVTKRLRPERRSARALVLSPTRELSGQILESFRLYGKHVRPSTALAIGGVPIGRQARSLA 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVL+ TPGR++D      + ++ +E+ V+DEAD+MLDMGFI  I++I + +P  R+ 
Sbjct: 129 GGVDVLVATPGRLVDLLENNAVRLDMVEVFVLDEADQMLDMGFIHAIRSIVARLPHKRRN 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K+++  L +P R+ V   + TA+ IE      +   + K  LL ++L 
Sbjct: 189 LFFSATMPREIEKLADTLLSDPVRVAVTPVAKTADKIEQKVF--FTDRAGKPNLLVEVL- 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            + T+   ++F   K     +  SL   G +  AIHGN  Q  R + L+ F++G ++++V
Sbjct: 246 GEPTLDRALVFSRTKHGADRVVKSLAGAGINAEAIHGNKSQPQRERALAAFRQGVVKVLV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+P V HV N+D+PN  E+Y+HRIGRT RAGR G A +    E+   +  I
Sbjct: 306 ATDIAARGIDVPGVSHVINYDLPNVPESYVHRIGRTARAGREGIAISFCDGEERPFLRDI 365

Query: 361 EKLIE 365
           E+LI+
Sbjct: 366 ERLIK 370


>gi|332687106|ref|YP_004456880.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311]
 gi|332371115|dbj|BAK22071.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311]
          Length = 502

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 157/383 (40%), Positives = 237/383 (61%), Gaps = 13/383 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS +++ A+  +G+ + TPIQ +TIPL L+  DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKELGLSSQLLLAIERSGFEEATPIQAETIPLALKGKDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK   + +  + L++ PTRELA Q  +   + G++  + +  + GG     Q + L+
Sbjct: 61  ---EKIDTKNQKLQGLVIAPTRELAIQTQEELYRLGRDKKIKIQAVYGGADIGRQIRALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  IE LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 ERPQIVVGTPGRLLDHLNRRTLKLEVIETLVLDEADEMLNMGFLEDIEKIISQVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F++NP  +++     TA+ I+  +V   ++  +K  ++ +LL 
Sbjct: 178 LLFSATMPTAIKNIGIKFMKNPDHVKIKAKEMTADLIDQYYVR--SKDYEKFDIMTRLLD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L  FK G + ++V
Sbjct: 236 VQ-TPELTIVFGRTKRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRAFKNGDLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           E L +K+       +S+L PP E
Sbjct: 355 EDLTKKR-------MSTLRPPTE 370


>gi|229028084|ref|ZP_04184235.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271]
 gi|228733237|gb|EEL84068.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271]
          Length = 527

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 159/381 (41%), Positives = 237/381 (62%), Gaps = 8/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  
Sbjct: 4   FRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    +++ PTRELA QV +   K GK+  + +  + GG     Q + L++ 
Sbjct: 64  VDTNKEAVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLL
Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+  P+ I+V     T   I+  ++    Q  KK  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG I+++VA+
Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357

Query: 363 LIEKKVDWLNGDLSSLNPPLE 383
             ++KVD +  +  +L+  LE
Sbjct: 358 TTKRKVDRM--EAPTLDEALE 376


>gi|218895359|ref|YP_002443770.1| DEAD/DEAH box helicase [Bacillus cereus G9842]
 gi|228906018|ref|ZP_04069910.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 200]
 gi|228937529|ref|ZP_04100171.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228970416|ref|ZP_04131071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228976986|ref|ZP_04137394.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           Bt407]
 gi|218543277|gb|ACK95671.1| DEAD/DEAH box helicase [Bacillus cereus G9842]
 gi|228782733|gb|EEM30903.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           Bt407]
 gi|228789302|gb|EEM37226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228822140|gb|EEM68126.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228853621|gb|EEM98386.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 200]
 gi|326938018|gb|AEA13914.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 529

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 156/371 (42%), Positives = 231/371 (62%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  
Sbjct: 4   FRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    +++ PTRELA QV +   K GK+  + +  + GG     Q + L++ 
Sbjct: 64  VDTNKEAVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLL
Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+  P+ I+V     T   I+  ++    Q  KK  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG I+++VA+
Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357

Query: 363 LIEKKVDWLNG 373
             ++KVD +  
Sbjct: 358 TTKRKVDRMEA 368


>gi|75760678|ref|ZP_00740704.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228898976|ref|ZP_04063254.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 4222]
 gi|74491828|gb|EAO55018.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228860669|gb|EEN05051.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 4222]
          Length = 521

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 156/371 (42%), Positives = 231/371 (62%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  
Sbjct: 4   FRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    +++ PTRELA QV +   K GK+  + +  + GG     Q + L++ 
Sbjct: 64  VDTNKEAVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLL
Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+  P+ I+V     T   I+  ++    Q  KK  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG I+++VA+
Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357

Query: 363 LIEKKVDWLNG 373
             ++KVD +  
Sbjct: 358 TTKRKVDRMEA 368


>gi|291614807|ref|YP_003524964.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291584919|gb|ADE12577.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 466

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 163/391 (41%), Positives = 240/391 (61%), Gaps = 26/391 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS ++  AV + GY +PTPIQ + IP++L+  D+ G AQTGTGKTA F LP+L
Sbjct: 1   MSFKSLGLSEEIARAVSERGYTEPTPIQAQAIPVILKGGDLMGGAQTGTGKTAGFTLPLL 60

Query: 61  T-ILEK--------------GR-------ARVRMP-RTLILEPTRELAAQVADNFEKYGK 97
             ++EK              GR       + +R P R L+L PTRELAAQV ++   YGK
Sbjct: 61  QRLMEKPISGQPSPQSSPASGRGGEREKHSSIRAPIRALVLTPTRELAAQVEESVRLYGK 120

Query: 98  NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
              L   ++ GG+    Q K+L    D+L+ TPGR+LDH  +  + ++++EILV+DEADR
Sbjct: 121 YLPLKSMMMFGGVNINPQIKQLHGRVDILVATPGRLLDHLQQKTVDLSHVEILVLDEADR 180

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I+ + +++P  RQ LLFSAT +DE++ +++  L NP  IEV   +   E I
Sbjct: 181 MLDMGFIRDIKRVLAVLPKQRQNLLFSATFSDEIKLLADGLLNNPALIEVARRNQANELI 240

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
           E           +K  LL  L++  +  +  ++F   K    NL   L K+G    AIHG
Sbjct: 241 EQRVYPV--DRERKRNLLTHLIKDHNWFQV-LVFTRTKHGANNLADHLNKEGIPAMAIHG 297

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           N  Q +R + L+ FK   +Q++VA+D+AARG+DI ++ HV N+++PN  E+Y+HRIGRTG
Sbjct: 298 NKSQAARTRALAEFKTAKLQVLVATDIAARGIDISELPHVVNYELPNVPEDYVHRIGRTG 357

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           RAG  G+A +LV  ++ K +  IE+LI++++
Sbjct: 358 RAGSEGEASSLVCIDEKKLLHDIERLIKREI 388


>gi|32475237|ref|NP_868231.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
 gi|32445778|emb|CAD78509.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
          Length = 931

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 150/371 (40%), Positives = 235/371 (63%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L  +V  AV  +GY KPTPIQ + IP +L   DV   +QTGTGKTA+F LP+L+ 
Sbjct: 306 FRDLDLRAEVQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPILSR 365

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++    R R P+ L+L PTRELA QVA +F KYG + +   VA + GG  +E Q K+L R
Sbjct: 366 VD---VRSRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRR 422

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L + +++ LV+DEAD ML+MGF+  +Q +    P  RQ  
Sbjct: 423 GVQVVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQVA 482

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++K+++ +L +P RI + + + TA ++     A +     K   L ++L+ 
Sbjct: 483 LFSATLPKPIRKIADEYLNDPARITIKSKTITAASVRQR--ALFVSPRDKIDALTRILEV 540

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++T    I+F   K + +++   L +QGFS  A++G++ Q+ R + +   K G + ++VA
Sbjct: 541 EET-DGVIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVA 599

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFNFD+P+ +E+Y+HRIGRTGRAGR G+A   +     + +  IE
Sbjct: 600 TDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQLRFIE 659

Query: 362 KLIEKKVDWLN 372
              ++ ++ ++
Sbjct: 660 NTTKQPIEIID 670


>gi|254487619|ref|ZP_05100824.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
 gi|214044488|gb|EEB85126.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
          Length = 437

 Score =  299 bits (765), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 157/376 (41%), Positives = 239/376 (63%), Gaps = 9/376 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  +GL  ++V A+ + G   PTPIQ + IP  +   DV G+AQTGTGKTA+F +P++ 
Sbjct: 3   DFEMMGLPRRLVKALTNMGMTDPTPIQKQAIPHAMNGRDVMGLAQTGTGKTAAFGVPLVA 62

Query: 62  -ILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +LE + R   R  R L+L PTRELA Q+ +N + + +   L   +++GG     Q K+L
Sbjct: 63  QMLEMEARPEPRTVRGLVLAPTRELANQIMENLKGFCEGTQLKAMMVVGGQSINPQIKRL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+L+ TPGR+LD  +R  +L++    LV+DEAD+MLDMGFI  ++ I S++P  RQ
Sbjct: 123 ERGVDLLVATPGRLLDLMDRRAVLLHKTTFLVLDEADQMLDMGFIHDLRKIASVLPKERQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQ 237
           T+LFSATM   + +++ ++L +P RIEV+ P   A+ +  E  F+A     ++K ALL +
Sbjct: 183 TMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKVTQEVHFIAK----AEKKALLIE 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL ++ T +  ++F   K     L   L K GF   +IHGN  Q  R + + +FK+G I 
Sbjct: 239 LL-AKHTEERALVFGRTKHGCEKLMKDLVKSGFKAASIHGNKSQGQRDRAIESFKKGDIT 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIPDV HV+N+++PN  +NY+HRIGRT RAG+ G A    A +++  +
Sbjct: 298 VLVATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGEL 357

Query: 358 DAIEKLIEKKVDWLNG 373
             I+K ++  +   +G
Sbjct: 358 KDIQKTMKIAIPVASG 373


>gi|296105809|ref|YP_003617509.1| rhlE ATP-dependent RNA helicase [Legionella pneumophila 2300/99
           Alcoy]
 gi|295647710|gb|ADG23557.1| rhlE ATP-dependent RNA helicase [Legionella pneumophila 2300/99
           Alcoy]
          Length = 414

 Score =  299 bits (765), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 163/373 (43%), Positives = 229/373 (61%), Gaps = 10/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L   +  AV + GY  PT IQ+K IPL+L  HD+ G AQTGTGKTASFVLP  
Sbjct: 1   MSFKQLALIEPLNRAVSELGYTNPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLP-- 58

Query: 61  TILEKGRARVRMPR----TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            IL+K   + +  R     LIL PTRELA QV ++  +YGK   L  A++ GG+    Q 
Sbjct: 59  -ILQKASQQTQTSRNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQI 117

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K+L+ G ++L+ TPGR+LD + +G +  + I+ LV+DEADRMLDMGFI  I+ I  L+P 
Sbjct: 118 KQLDSGLEILVATPGRLLDLYQQGAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPL 177

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT T E++ ++ N L     I++   ++  +TI+    +     + K ALL 
Sbjct: 178 KRQNLLFSATFTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSV--DRNHKLALLS 235

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL  ++     ++F   K     L   L +      AIHGN  Q  R K L++FK G +
Sbjct: 236 HLLH-KNNWGQTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKV 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q ++A+D+AARG+DI  +  V NFD+P+  E+Y+HRIGRTGRAG  G A +LV+ E+IK 
Sbjct: 295 QTLIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKL 354

Query: 357 IDAIEKLIEKKVD 369
           + +IEKLI +K++
Sbjct: 355 LLSIEKLINQKLE 367


>gi|229074285|ref|ZP_04207329.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18]
 gi|229094946|ref|ZP_04225949.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29]
 gi|229113900|ref|ZP_04243333.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3]
 gi|228669561|gb|EEL24970.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3]
 gi|228688479|gb|EEL42354.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29]
 gi|228708837|gb|EEL60966.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18]
          Length = 529

 Score =  299 bits (765), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 157/371 (42%), Positives = 230/371 (61%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  
Sbjct: 4   FRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL-- 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +K   R    + +++ PTRELA QV +   K GK+  + +  + GG     Q + L++ 
Sbjct: 62  -DKVDTRKEAVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLL
Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+  P+ I+V     T   I+  ++    Q  KK  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG I+++VA+
Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357

Query: 363 LIEKKVDWLNG 373
             ++KVD +  
Sbjct: 358 TTKRKVDRMEA 368


>gi|89894700|ref|YP_518187.1| hypothetical protein DSY1954 [Desulfitobacterium hafniense Y51]
 gi|89334148|dbj|BAE83743.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 537

 Score =  299 bits (765), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 154/367 (41%), Positives = 236/367 (64%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ LS +V+ A+ + G+ +P+PIQ   IP+ +   D+ G AQTGTGKTA+F +P   I
Sbjct: 16  FGEISLSKQVLQALSEMGFEEPSPIQKAAIPVAMDGLDLIGQAQTGTGKTAAFGIP---I 72

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            EK   + +  + LIL PTRELA QV++   K GK  ++    + GG   + Q + L  G
Sbjct: 73  CEKINPKFQAVQALILTPTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIRALRFG 132

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQTL 181
           + V++ TPGRILDH NRG L +  ++++V+DEAD MLDMGF+  I+ I   VP   RQ +
Sbjct: 133 SQVVVGTPGRILDHLNRGTLKLQYVKMVVLDEADEMLDMGFVDDIETILKQVPKEERQVM 192

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++K+++N++  PK + V+    T   IE  F  T  +   K   L +++  
Sbjct: 193 LFSATMPPEIKKLAQNYMSQPKSVAVSRDELTVPLIEQVFYETRDKI--KVDALCRIIDM 250

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D +   IIFC  K+ V  L  +LE +G+   A+HG++ Q+ R +++  F++G ++L+VA
Sbjct: 251 ED-IGQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELLVA 309

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI +V HV NFD+P   E+Y+HRIGRTGRAGR G+A TLV+  + + +  IE
Sbjct: 310 TDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVSSREYRQLRLIE 369

Query: 362 KLIEKKV 368
           +LI+ ++
Sbjct: 370 RLIKTRI 376


>gi|158522360|ref|YP_001530230.1| DEAD/DEAH box helicase domain-containing protein [Desulfococcus
           oleovorans Hxd3]
 gi|158511186|gb|ABW68153.1| DEAD/DEAH box helicase domain protein [Desulfococcus oleovorans
           Hxd3]
          Length = 425

 Score =  299 bits (765), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 158/369 (42%), Positives = 227/369 (61%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F   G +P+V   + +AGY  PTPIQ++ I  V++  DV G+AQTGTGKTA+FVLP+L
Sbjct: 1   MNFEAFGFNPQVAAGIKEAGYAVPTPIQVQAIAPVMENRDVMGMAQTGTGKTAAFVLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L KG+      R LIL PTRELA Q        G+   L  A + GG+    Q +KL+
Sbjct: 61  HRLMKGQKG--GIRALILAPTRELAEQTHQAIGVLGRKTGLKSATVYGGVGITPQIQKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++  PGR+LDH  R    ++ +E+LVIDEAD++ DMGF P I+ I + +P  RQT
Sbjct: 119 K-VDIVVACPGRLLDHIGRRTANLSKLEVLVIDEADQLFDMGFFPDIKKILTHLPKQRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++K++ + LQNP  ++V    + A+T+ H      AQ+ K   LL  L Q
Sbjct: 178 LLFSATMPAEIRKLAADILQNPATVQVGN-EAPADTVSHALYPV-AQHLKTAFLLDLLKQ 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +Q   ++ ++F   K    NL   L   GF   ++ GN+ Q  R   L  F++GT Q++V
Sbjct: 236 TQ--ARSVLVFTRTKHRAKNLDQKLAGAGFRSTSLQGNLSQVKRQAALDGFRKGTFQILV 293

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV N+DVP+  E YIHRIGRTGRA   G+AFT +  ED   + AI
Sbjct: 294 ATDIAARGIDVTRVSHVINYDVPSTPEAYIHRIGRTGRATCTGEAFTFITGEDRNMVRAI 353

Query: 361 EKLIEKKVD 369
            +L+  +++
Sbjct: 354 NRLLGSEIE 362


>gi|313634128|gb|EFS00790.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL N1-067]
          Length = 526

 Score =  299 bits (765), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 159/371 (42%), Positives = 231/371 (62%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++ GL  K+V +V   G+ + TPIQ KTIPL L   D+ G AQTGTGKTA+F LPM+  
Sbjct: 6   FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++    V+    LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++ 
Sbjct: 66  IDQKSNSVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKF 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L + N+E LV+DEAD ML+MGFI  I+ I   VP  RQTLL
Sbjct: 123 PQIVVGTPGRILDHINRRTLKLENVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D ++++ E F+ +P+ I +     TA  IE  FV  + +  +K  +L +LL  Q
Sbjct: 183 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  IIF   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA+
Sbjct: 241 -APELAIIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E+
Sbjct: 300 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 359

Query: 363 LIEKKVDWLNG 373
             +K++  L  
Sbjct: 360 TTKKRMQPLQA 370


>gi|269963221|ref|ZP_06177555.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio harveyi
           1DA3]
 gi|269832026|gb|EEZ86151.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio harveyi
           1DA3]
          Length = 421

 Score =  299 bits (765), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 157/404 (38%), Positives = 252/404 (62%), Gaps = 9/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++FADLG+  ++V  +     V PTP+Q K+IP VL+  D+   AQTGTGKTA+F LP++
Sbjct: 7   VNFADLGIEQQLVDTLSGMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPII 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++ + R   P+ LIL PTRELA QV DN  +Y  N +L +  + GG     Q +KLE
Sbjct: 67  QTVQQ-KKRNGTPQALILVPTRELAQQVMDNLTQYSANTDLKIVCVYGGTSIGVQKRKLE 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+LI TPGR+LDH   G + ++   +LV+DEADRMLDMGF P +Q I   +P  +Q 
Sbjct: 126 EGADILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPQDKQI 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++ ++   + +P  +EV+  ++TAET++           +K  LL  L+ 
Sbjct: 186 MLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPV--DKKRKRELLAYLIG 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++  +  ++F   K+    L   L+  G    +I+G+  Q +R + L  FKEG ++ ++
Sbjct: 244 SRN-WQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKEGKVRALI 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++   + AI
Sbjct: 303 ATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLHAI 362

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           E L+++++  +WL G   SL   +E+++  ++   R+ +   +K
Sbjct: 363 ENLLDQRLPQEWLEGFEPSL---IEEVEPERNGGGRRKSRSSEK 403


>gi|209550473|ref|YP_002282390.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209536229|gb|ACI56164.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 567

 Score =  299 bits (765), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 155/385 (40%), Positives = 239/385 (62%), Gaps = 8/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LG+S  +V  +   G   PTPIQ + IPL+L+  D+ G+AQTGTGKTA+F LP++ 
Sbjct: 3   NFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 62

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L  ++ R   R  RTLIL PTREL  Q+A+  +K+ +  +L + +++GG+    Q  +L
Sbjct: 63  KLLADERRPDNRTTRTLILAPTRELVNQIAETLKKFIRKSHLRINVVVGGVSINKQQLQL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G DVL+ TPGR+LD  NR  + +  +  LV+DEAD+MLD+GF+  ++ I  +VP  RQ
Sbjct: 123 EKGTDVLVATPGRLLDLINRRAISLTTVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   +  ++ ++L +P ++EV  P   A+ +E  +V   A  + K  LL++ L
Sbjct: 183 TMLFSATMPKAIADLAGDYLVDPVKVEVTPPGKAADKVEQ-YVHFVAGKNDKTELLRKSL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++     I+F   K     L   LE  G+SV +IHGN  Q  R + L  F++G+I+ +
Sbjct: 242 -TENPDGRAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKTL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DIP V HV+N+D+P   + Y+HRIGRT RAGR G A    A ++ K +  
Sbjct: 301 IATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRD 360

Query: 360 IEKLIEKKVDWLNGD----LSSLNP 380
           IE+L+   +   +G+    +SS  P
Sbjct: 361 IERLMGIDIAVASGEAPANISSAGP 385


>gi|146307171|ref|YP_001187636.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145575372|gb|ABP84904.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 560

 Score =  299 bits (765), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 149/367 (40%), Positives = 231/367 (62%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL P ++ A+   GY +P+PIQ + IP++L  HD+ G AQTGTGKTA+F LP+L+ 
Sbjct: 8   FAALGLHPNILAALTAVGYEEPSPIQSQAIPVILAGHDMIGQAQTGTGKTAAFALPLLSK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ LIL PTRELA QVA  FE Y K    + V  + GG P   Q K L  
Sbjct: 68  IDPAK---REPQVLILAPTRELALQVATAFETYSKQMPGVNVVAVYGGAPMGPQLKALRM 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  R   +++ I+ LV+DEAD ML +GF+  ++ I   +P +RQ++
Sbjct: 125 GAQIIVATPGRLVDHLRRDDKVLSTIQHLVLDEADEMLKLGFMDDLEIIFEAMPESRQSV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L+ P+ I++   + T   IE   +  +A       L  +LL+ 
Sbjct: 185 LFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVSRIEQAHLMIHADQKTNAVL--RLLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I F   K+  ++L  +LE +GF   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 243 ED-FDALIAFVRTKQATLDLASALEAKGFKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKV 368
           ++  +KV
Sbjct: 362 RVTGQKV 368


>gi|219669142|ref|YP_002459577.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
 gi|219539402|gb|ACL21141.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 530

 Score =  299 bits (765), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 154/367 (41%), Positives = 236/367 (64%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ LS +V+ A+ + G+ +P+PIQ   IP+ +   D+ G AQTGTGKTA+F +P   I
Sbjct: 9   FGEISLSKQVLQALSEMGFEEPSPIQKAAIPVAMDGVDLIGQAQTGTGKTAAFGIP---I 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            EK   + +  + LIL PTRELA QV++   K GK  ++    + GG   + Q + L  G
Sbjct: 66  CEKVNPKFQAVQALILTPTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIRALRFG 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQTL 181
           + V++ TPGRILDH NRG L +  ++++V+DEAD MLDMGF+  I+ I   VP   RQ +
Sbjct: 126 SQVVVGTPGRILDHLNRGTLKLQYVKMVVLDEADEMLDMGFVEDIETILKQVPKEERQVM 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++K+++N++  PK + V+    T   IE  F    A+   K   L +++  
Sbjct: 186 LFSATMPPEIKKLAQNYMHQPKSVAVSRDELTVPLIEQVFYE--ARDKIKVDALCRIIDM 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D +   IIFC  K+ V  L  +LE +G+   A+HG++ Q+ R +++  F++G ++L+VA
Sbjct: 244 ED-IGQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI +V HV NFD+P   E+Y+HRIGRTGRAGR G+A TLV+  + + +  IE
Sbjct: 303 TDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVSSREYRQLRLIE 362

Query: 362 KLIEKKV 368
           +LI+ ++
Sbjct: 363 RLIKTRI 369


>gi|289434134|ref|YP_003464006.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170378|emb|CBH26918.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 526

 Score =  299 bits (765), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 159/371 (42%), Positives = 231/371 (62%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++ GL  K+V +V   G+ + TPIQ KTIPL L   D+ G AQTGTGKTA+F LPM+  
Sbjct: 6   FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++    V+    LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++ 
Sbjct: 66  IDQKSNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKF 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L + N+E LV+DEAD ML+MGFI  I+ I   VP  RQTLL
Sbjct: 123 PQIVVGTPGRILDHINRRTLKLENVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D ++++ E F+ +P+ I +     TA  IE  FV  + +  +K  +L +LL  Q
Sbjct: 183 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  IIF   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA+
Sbjct: 241 -APELAIIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E+
Sbjct: 300 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 359

Query: 363 LIEKKVDWLNG 373
             +K++  L  
Sbjct: 360 TTKKRMQPLQA 370


>gi|251796145|ref|YP_003010876.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
 gi|247543771|gb|ACT00790.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
          Length = 535

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 150/368 (40%), Positives = 230/368 (62%), Gaps = 10/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+ GL PKV+ A+ + G+ + TPIQ K+IP+ +   D+ G AQTGTGKTA+F +P++  
Sbjct: 4   FAEFGLEPKVLQAITELGFEESTPIQDKSIPIAMAGSDMIGQAQTGTGKTAAFGIPLINK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +     R+     LI+ PTRELA QVAD   K  K   L    + GG     Q + L++ 
Sbjct: 64  ISINEERIV---ALIMTPTRELAIQVADEIGKLTKYKGLRSLPIYGGQEIGRQIRALKKK 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++I TPGR+LDH NR  + + +++ +V+DEAD MLDMGF+  IQ+I   VP  RQTLL
Sbjct: 121 PQIIIGTPGRLLDHINRKTIKLEDVQTVVLDEADEMLDMGFMEDIQSILKQVPEERQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQQLLQ 240
           FSATM   +QK+++ FL+NP+ + V +   TA TI+  +   +   ++   C LL     
Sbjct: 181 FSATMPPNIQKLAQQFLKNPEHVAVISKQVTAPTIQQNYFEVHERQKFEALCRLL----- 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             ++ +  IIF   K+ V  L   L+K+G++   +HG++ Q  R  ++  F++G+I ++V
Sbjct: 236 DMESPELAIIFGRTKRRVDELSEGLQKRGYTADGLHGDLSQNQRDNVMRKFRDGSIDVLV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV NFD+P   E+Y+HRIGRTGRAG+ G A++ V   ++ H+  I
Sbjct: 296 ATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGSAYSFVTPREVDHLHFI 355

Query: 361 EKLIEKKV 368
           EK+  +++
Sbjct: 356 EKVTRQRI 363


>gi|157374161|ref|YP_001472761.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157316535|gb|ABV35633.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 435

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 169/439 (38%), Positives = 257/439 (58%), Gaps = 21/439 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P+++ A+ + GY K TP+Q + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFAPEILRAISECGYQKMTPVQQEAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  TIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             +     E  R+  R    LIL PTRELA+Q+ADN   Y K   ++V  + GG+  E Q
Sbjct: 61  QKMFDNPTETQRSNTR---ALILTPTRELASQIADNINDYSKYMEVSVLTIYGGVKLETQ 117

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            +KL+RGAD+++ TPGR+L+H     L ++N++ +V+DEADRMLDMGFI  IQ I   V 
Sbjct: 118 AQKLKRGADIIVATPGRLLEHLQACNLNLSNVDFMVLDEADRMLDMGFISDIQKIMQAVN 177

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT +  ++K++ + L  PK I V++ +STA+T+    V    +  +K  LL
Sbjct: 178 KNRQNLLFSATFSSAVKKLANDMLVKPKLISVDSQNSTADTVSQ--VVYPVEQRRKRELL 235

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +L+  +   +  ++F   +     L   L   G +   +HG   Q +R + L  FKEG 
Sbjct: 236 SELI-GKKNWQQVLVFTATRDAADKLVKELNLDGITSAVVHGEKAQGNRRRALREFKEGK 294

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VA+++AARGLDI D+ +V N+D+P  AE+Y+HRIGRTGRAG+ G A +LV++E+ +
Sbjct: 295 VRALVATEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEER 354

Query: 356 HIDAIEKLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNP----IPQKSTG 405
            +  IEKLI K++  +       G    L   ++K         R++N     I +K+ G
Sbjct: 355 TLADIEKLIGKQLRRITVPGYEVGSRELLIKQIQKRRSFAKKQQREDNTGAQMIAEKNLG 414

Query: 406 FDRRKKNYSSQKSHIPLKE 424
             R K   SS K+   +K+
Sbjct: 415 SRRVKVKNSSNKAPTKVKK 433


>gi|149179168|ref|ZP_01857736.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
 gi|148841986|gb|EDL56381.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
          Length = 445

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 152/368 (41%), Positives = 230/368 (62%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L   V  A+++  Y  PTPIQ +TIP  L+  DV G AQTGTGKTA+  LP+L  
Sbjct: 4   FQELKLIAPVQKALVEENYKIPTPIQAQTIPAALEGRDVLGCAQTGTGKTAALALPILNQ 63

Query: 63  LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L K   +     P  L+L PTRELA Q+ D+F+ YG++  L   L+ GG+    Q K L+
Sbjct: 64  LGKNSRKSIPHHPLALVLAPTRELAIQIGDSFDAYGRHLKLRSVLIYGGVGQGNQVKALK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +L+ TPGR+LD  N+G + +N +E+ V+DEADRMLDMGF+P ++ I + +P  RQ+
Sbjct: 124 RGAHILVATPGRLLDLMNQGHIKLNQLEVFVLDEADRMLDMGFLPDLKRIITQLPTQRQS 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+  ++ +++ + L  P  + V   +++ E I+   +  + + + K  LLQ++L 
Sbjct: 184 LFFSATLAPKITELAHSLLSKPVTVNVTPKTTSVEKIQQQLM--FVERNFKQPLLQKIL- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D ++  ++F   K+    L   L + GF   AIHGN  Q +R + L  F+   +Q++V
Sbjct: 241 GGDEVERALVFTKTKRTANTLSQRLVRSGFKATAIHGNKSQGARQQALEAFRRKQVQVLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + HV NFD+P   E Y+HRIGRTGRAG +G A +  ++ + K + +I
Sbjct: 301 ATDVAARGIDIDGITHVINFDLPVEPEAYVHRIGRTGRAGANGIAISFCSESERKELRSI 360

Query: 361 EKLIEKKV 368
           E+LI +KV
Sbjct: 361 ERLIGQKV 368


>gi|328544967|ref|YP_004305076.1| ATP-dependent RNA helicase protein [polymorphum gilvum SL003B-26A1]
 gi|326414709|gb|ADZ71772.1| ATP-dependent RNA helicase protein [Polymorphum gilvum SL003B-26A1]
          Length = 503

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 159/377 (42%), Positives = 225/377 (59%), Gaps = 5/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  LGLS  ++ ++   GY  PTPIQ   IP +L  HD+ G+AQTGTGKTA+F LP+   
Sbjct: 22  FEALGLSSPLLKSIAALGYEAPTPIQTDAIPHILAGHDLMGLAQTGTGKTAAFGLPLANR 81

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +     A  R  R LIL PTREL  Q+A N   + K   L VA+++GG+    Q K+L 
Sbjct: 82  MLASADTAAPRTTRALILAPTRELVTQIAQNLVAFVKGSPLQVAVVMGGVSIGGQIKRLA 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+LD  +R  L ++ +  LV+DEAD+MLD+GFI  ++ I +LVP  RQT
Sbjct: 142 RGTDILVATPGRLLDLVDRNALRLDEVGYLVLDEADQMLDLGFIHALRKIAALVPKKRQT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  +++ ++  +L++P R+EV     TA+ ++ C V   AQ  K   L+  L  
Sbjct: 202 LLFSATMPKQIEDLARAYLKDPVRVEVAPAGRTADKVDQC-VHFVAQADKTDLLISCL-- 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+      ++F   K     +   L   G    AIHGN  Q  R + +   K G  +++V
Sbjct: 259 SERAQDLSLVFARTKHGADKVVRKLVAAGLKANAIHGNKSQNQRDRAIKELKTGETRILV 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DIP V HV+NFD+P+  E+Y+HRIGRT RAG  G A    A E+I  +  I
Sbjct: 319 ATDVAARGIDIPGVSHVYNFDLPDVPESYVHRIGRTARAGADGDAVAFCAPEEIGLLRDI 378

Query: 361 EKLIEKKVDWLNGDLSS 377
           EKL   KV   +G++ +
Sbjct: 379 EKLTGLKVRVASGEVPA 395


>gi|210631565|ref|ZP_03296936.1| hypothetical protein COLSTE_00821 [Collinsella stercoris DSM 13279]
 gi|210160006|gb|EEA90977.1| hypothetical protein COLSTE_00821 [Collinsella stercoris DSM 13279]
          Length = 595

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 157/379 (41%), Positives = 222/379 (58%), Gaps = 10/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS +V+ AV D GY  PTP+Q  +IP  L   DV   AQTGTGKTA+F+LP +  
Sbjct: 41  FADLGLSDEVLAAVADMGYTSPTPVQAASIPHALDGEDVLAAAQTGTGKTAAFLLPTMNN 100

Query: 63  LE---KGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           L    +GRAR R+    P  L++ PTRELA Q+ D      K    T   ++GG+ +  Q
Sbjct: 101 LPHVPRGRARGRVAAQGPLMLVVTPTRELAQQIEDVCRAIAKCTGHTSVTVVGGVSYNPQ 160

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL+RG D+LI TPGR+ D  ++G   ++ +++LV+DEADRMLDMGF+P ++ I     
Sbjct: 161 RDKLKRGCDILIATPGRLQDLIDQGACSLDQVQVLVLDEADRMLDMGFLPAVRRIVGYTR 220

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT+ ++      + + +P R+E+   +STA+T+E   +        K ALL
Sbjct: 221 DDRQTLLFSATLDEQAVGSITDLVHDPARVEIAPVTSTADTVEQYVLPV--SLEAKNALL 278

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +L+ +   +  I+FC  K         L + G +  AIHG+  Q  R + L  F+ G 
Sbjct: 279 ASVLKREGASR-AIVFCRTKHRADACSRRLARAGITCAAIHGDRSQAQRERALKAFRAGE 337

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+D+ ARG+DI DV +V NFDVP    +YIHRIGRTGRAG  G + T V  +D+ 
Sbjct: 338 CDVLVATDVLARGIDISDVRYVVNFDVPEDPVDYIHRIGRTGRAGELGWSLTFVTPDDVA 397

Query: 356 HIDAIEKLIEKKVDWLNGD 374
               IE L+ K  D  + +
Sbjct: 398 EFYDIEALMGKTADLFDAE 416


>gi|119357064|ref|YP_911708.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354413|gb|ABL65284.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeobacteroides
           DSM 266]
          Length = 418

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 159/370 (42%), Positives = 234/370 (63%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L +   ++ A+ + GY  PTPIQ + IP+VLQ  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MQFESLNIIEPILLALREEGYSTPTPIQAEAIPIVLQGIDLLGCAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            IL + +   + R  R+LI+ PTRELA Q+ ++F+ YG++  LT  ++ GG+    Q   
Sbjct: 61  QILSENKLVDKSRKIRSLIVTPTRELAIQIGESFKAYGRHTGLTNTVIFGGVNQNPQTAS 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+LD  N+G L + ++EILV+DEADRMLDMGFI  ++ I + +P  +
Sbjct: 121 LLRGVDILVATPGRLLDLMNQGHLHLRDVEILVLDEADRMLDMGFIHDVKKILAHLPKKK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+ K++   L NP ++ V   SST E I       +     K +LL  L
Sbjct: 181 QSLFFSATMPPEIVKLAATILHNPSKVSVTPVSSTVEIINQAIY--FVDKGNKNSLLLDL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ ++ +K  ++F   K     +   L K   +  AIHGN  Q +R + L+NFK  T ++
Sbjct: 239 LKDKN-IKTSLVFTRTKHGADKVVKYLLKHHITAEAIHGNKAQNARQRALNNFKAQTTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+ +V NF++PN  E Y+HRIGRTGRAG  G A +    E+ +++ 
Sbjct: 298 LVATDIAARGIDVDDLEYVINFEMPNIPETYVHRIGRTGRAGAKGTALSFCDAEEKEYLR 357

Query: 359 AIEKLIEKKV 368
            IEKLI KK+
Sbjct: 358 DIEKLIAKKI 367


>gi|229171082|ref|ZP_04298680.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3]
 gi|228612412|gb|EEK69636.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3]
          Length = 530

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 159/381 (41%), Positives = 237/381 (62%), Gaps = 8/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  
Sbjct: 4   FRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    +++ PTRELA QV +   K GK+  + +  + GG     Q + L++ 
Sbjct: 64  VDTNKEAVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLL
Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPDTHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+  P+ I+V     T   I+  ++    Q  KK  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG I+++VA+
Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357

Query: 363 LIEKKVDWLNGDLSSLNPPLE 383
             ++KVD +  +  +L+  LE
Sbjct: 358 TTKRKVDRM--EAPTLDEALE 376


>gi|229188506|ref|ZP_04315550.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           10876]
 gi|228594969|gb|EEK52744.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           10876]
          Length = 528

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 156/371 (42%), Positives = 231/371 (62%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  
Sbjct: 4   FRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    +++ PTRELA QV +   K GK+  + +  + GG     Q + L++ 
Sbjct: 64  VDTNKEAVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLL
Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+  P+ I+V     T   I+  ++    Q  KK  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG I+++VA+
Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357

Query: 363 LIEKKVDWLNG 373
             ++KVD +  
Sbjct: 358 TTKRKVDRMEA 368


>gi|183598226|ref|ZP_02959719.1| hypothetical protein PROSTU_01610 [Providencia stuartii ATCC 25827]
 gi|188020395|gb|EDU58435.1| hypothetical protein PROSTU_01610 [Providencia stuartii ATCC 25827]
          Length = 445

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 174/428 (40%), Positives = 259/428 (60%), Gaps = 23/428 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F+DL L+ +++ A+ + GY  PTPIQ + IP VL  HD+   AQTGTGKTA F LP+L  
Sbjct: 4   FSDLALNEEILLAINELGYEAPTPIQQQAIPAVLDGHDLLASAQTGTGKTAGFTLPILQK 63

Query: 62  ILEKGR-ARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           ++   R  + R P R LIL PTRELAAQVA+N ++Y ++  +   ++ GG+    Q  KL
Sbjct: 64  LISTPRIGKDRKPIRALILTPTRELAAQVAENVKEYSRHLRIRSFVVFGGVSINPQMMKL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+LI TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + S +P  RQ
Sbjct: 124 RGGVDILIATPGRLLDLEHQNAVNLSQVEILVLDEADRMLDMGFIHDIRRVISKLPKKRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT ++E+++++   L NP  IEV   +S +E +   FV  +    +K  LL  ++
Sbjct: 184 NLLFSATFSNEIKQLANKLLDNPVTIEVAPRNSASEQVTQ-FV-HHVDKKRKAELLSYMI 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  +  ++F   K     L   L K G    AIHGN  Q +R + L++FK G ++++
Sbjct: 242 -GRENWQQVLVFTRTKHGANRLAEHLNKDGVKAAAIHGNKSQGARTRALADFKSGDVRVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + +V NF++PN AE+Y+HRIGRTGRA   G A +LV  +++K +  
Sbjct: 301 VATDIAARGLDIEQLPYVVNFELPNVAEDYVHRIGRTGRADTTGMAVSLVCVDELKLLKD 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI---PQKSTGFDRRKKNYSSQ 416
           IEKL++K V            P+  I+  + + + K  PI   PQ++   +RR  N    
Sbjct: 361 IEKLLKKPV------------PVMAIEGYEPDPSIKPEPIQKAPQRNN--ERRSANKRHN 406

Query: 417 KSHIPLKE 424
            S  P +E
Sbjct: 407 TSVKPRRE 414


>gi|148358461|ref|YP_001249668.1| DEAD box family transporter ATP-dependent RNA helicase [Legionella
           pneumophila str. Corby]
 gi|148280234|gb|ABQ54322.1| ATP-dependent RNA helicase, DEAD box family [Legionella pneumophila
           str. Corby]
          Length = 414

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 163/373 (43%), Positives = 229/373 (61%), Gaps = 10/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L   +  AV + GY  PT IQ+K IPL+L  HD+ G AQTGTGKTASFVLP  
Sbjct: 1   MSFKQLALIEPLNRAVSELGYTNPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLP-- 58

Query: 61  TILEKGRARVRMPR----TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            IL+K   + +  R     LIL PTRELA QV ++  +YGK   L  A++ GG+    Q 
Sbjct: 59  -ILQKASQQTQTSRNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQI 117

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K+L+ G ++L+ TPGR+LD + +G +  + I+ LV+DEADRMLDMGFI  I+ I  L+P 
Sbjct: 118 KQLDSGLEILVATPGRLLDLYQQGAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPL 177

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT T E++ ++ N L     I++   ++  +TI+    +     + K ALL 
Sbjct: 178 KRQNLLFSATFTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSV--DRNHKLALLS 235

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL  ++     ++F   K     L   L +      AIHGN  Q  R K L++FK G +
Sbjct: 236 HLLH-KNNWGQTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKV 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q ++A+D+AARG+DI  +  V NFD+P+  E+Y+HRIGRTGRAG  G A +LV+ E+IK 
Sbjct: 295 QTLIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKL 354

Query: 357 IDAIEKLIEKKVD 369
           + +IEKLI +K++
Sbjct: 355 LLSIEKLINQKLE 367


>gi|171778647|ref|ZP_02919743.1| hypothetical protein STRINF_00595 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282604|gb|EDT48028.1| hypothetical protein STRINF_00595 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 533

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 152/371 (40%), Positives = 236/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ AV  AG+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELNLSEAILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R  V+    L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L 
Sbjct: 61  DKIDTSRNLVQ---ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + ++E L++DEAD ML+MGF+  I+ I S VP +RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLEHVETLILDEADEMLNMGFLEDIEAIISRVPESRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + ++++  NF++NP+ +++     T E I+  ++    + ++K   + +L+ 
Sbjct: 178 LLFSATMPEPIKRIGVNFMKNPEHVKIAAKELTTELIDQYYL--RVKENEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK   + ++V
Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQGKRLRVLRDFKNDNLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLAII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|197104230|ref|YP_002129607.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
 gi|196477650|gb|ACG77178.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
          Length = 470

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 156/369 (42%), Positives = 229/369 (62%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL+  ++ A+ D GYV PTPIQ + IP V+   D+ GIAQTGTGKTA+F LP+L  
Sbjct: 4   FTDLGLAKPLLKALADEGYVNPTPIQAQAIPGVMAGRDLLGIAQTGTGKTAAFALPILHR 63

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L  ++  A  R  R L+L PTRELA Q+A++F+ YG++  L+VA++ GG+ +  Q + L 
Sbjct: 64  LAEDRRPAPRRSARVLVLSPTRELATQIAESFKAYGRHLGLSVAVIFGGVKYGPQMRALA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVL+ TPGR++DH     +++  +E  V+DEAD+MLDMGFI  I+ I   +P  RQ 
Sbjct: 124 GGVDVLVATPGRLIDHLQEKSVVLEGVETFVLDEADQMLDMGFIVPIRRIVKFLPKRRQN 183

Query: 181 LLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           L FSATM  E++K++   L  NP ++ V  PS+T E I    +  + +  +K ALL +L 
Sbjct: 184 LFFSATMPAEIEKLTGEILNPNPLKVTVTPPSTTVERINQRVL--FVEQQRKRALLAELF 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               + K  I+F   K+    +   LE+ G    +IHG+  Q  R + L+ FK G ++ +
Sbjct: 242 DDA-SFKRVIVFTRTKRGADRVARGLEQVGVEAASIHGDKSQGQRERALAAFKAGDVRAL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  V HV  F++PN  E Y+HRIGRT RAG  G A    A ++   +  
Sbjct: 301 VATDIAARGIDIDAVSHVVQFELPNVPEAYVHRIGRTARAGADGSAVAFCADDERNLLKD 360

Query: 360 IEKLIEKKV 368
           IEK+ ++++
Sbjct: 361 IEKVTKQRI 369


>gi|254498821|ref|ZP_05111531.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
 gi|254351952|gb|EET10777.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
          Length = 418

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 154/372 (41%), Positives = 238/372 (63%), Gaps = 4/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   ++ AV ++GY +P+PIQ ++IP +L+ +D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFTSLGLIEPLLRAVSESGYNEPSPIQAQSIPTILRGNDLLASAQTGTGKTASFVLPIL 60

Query: 61  TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  + RA+    + LIL PTRELAAQV ++  +YGK+ +L  A++ GG+    Q  KL
Sbjct: 61  QRLHNQPRAKSNHTKVLILTPTRELAAQVHESIRQYGKHLSLRSAVVFGGVKISPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G ++L+ TPGR++D + +  +  +++  LV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RGGVEILVATPGRLMDLYQQRAIQFSDVNTLVLDEADRMLDMGFIHDIKRIINLLPKERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT ++ ++ +++  L  P  I+V   ++TA  ++          ++K ALL  L+
Sbjct: 181 NLLFSATFSEAIRTLAKGLLNKPVEIDVAPRNTTAIAVKQTVHPV--DKNRKHALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++     ++F   K     L   L ++     AIHGN  Q  R K+L++FK G + ++
Sbjct: 239 H-KNKWGQTLVFSKTKHGANKLVQQLAEEHIYAAAIHGNKSQSQRTKVLADFKSGELHIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAG  G A +LV  +++  + A
Sbjct: 298 VATDIAARGIDIDQLPCVVNYDLPQVAEDYVHRIGRTGRAGASGSAISLVCADEVGQLQA 357

Query: 360 IEKLIEKKVDWL 371
           IEKLI++K++ +
Sbjct: 358 IEKLIKRKLERI 369


>gi|114799942|ref|YP_759839.1| ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC 15444]
 gi|114740116|gb|ABI78241.1| ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC 15444]
          Length = 464

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 153/371 (41%), Positives = 228/371 (61%), Gaps = 9/371 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGL+ +++ ++  AGY  PTPIQ + IPLV+Q  D+ G+AQTGTGKT +F  P+L 
Sbjct: 8   DFQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILD 67

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L +    A VR  R L+L PTRELA Q+A +F  YG   NL V ++ GG     Q ++L
Sbjct: 68  RLSRNASPAPVRGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQL 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGA +L+ TPGR++D   +  + ++ +E L++DEAD+MLD+GFI  ++ I   VP  RQ
Sbjct: 128 ERGAHILVATPGRLIDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVPSKRQ 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQ 237
           TL FSATM   ++ ++  FL+NP  + V  P++TA  IE   CFV    +  +K +LL +
Sbjct: 188 TLFFSATMPKAVESLAATFLRNPAEVSVAPPATTAGRIEQRVCFV----EQPEKASLLIE 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            ++  + +++ I+F   K     +   L K      AIHGN  Q  R K L  FK G + 
Sbjct: 244 KIRDPE-LRSAIVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVP 302

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+ +  + HV N+D+P+  E ++HRIGRT RAG  G A +  ++++   +
Sbjct: 303 ILVATDIAARGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFCSRDERPTL 362

Query: 358 DAIEKLIEKKV 368
            AIEKL   K+
Sbjct: 363 RAIEKLTGLKL 373


>gi|315126148|ref|YP_004068151.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           sp. SM9913]
 gi|315014662|gb|ADT68000.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           sp. SM9913]
          Length = 607

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 146/348 (41%), Positives = 224/348 (64%), Gaps = 8/348 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LSP ++ AV + GY  P+ IQ + IPL+L+R DV G+AQTGTGKTA+F LP+L  
Sbjct: 7   FESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLLNN 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     V+ P+ L+L PTRELA QVA+ FE+Y K+   + V  L GG  +  Q   L R
Sbjct: 67  IDPS---VKQPQILVLTPTRELAIQVAEAFEQYAKHTRGVEVLALYGGQSYSIQLSALRR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH NRG +  + ++ LV+DEAD ML MGFI  ++NI    P  +QT 
Sbjct: 124 GAQIIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVENIMEKTPREKQTC 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  ++Q +S  ++ NP+++ ++  +ST  ++E  F   +   +K  A+++ L   
Sbjct: 184 LFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNAHVHKNK--AIVRFLEAE 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   +  I+F   + + V L   LE++GFS   ++G+++Q++R + +   K G + +++A
Sbjct: 242 Q--YEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNVVIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +D+AARGLD+  +  V N+D+P  +E Y+HRIGRTGRAGR GKA   V
Sbjct: 300 TDVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFV 347


>gi|332073919|gb|EGI84397.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA41301]
          Length = 524

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 153/372 (41%), Positives = 234/372 (62%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + NIE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQNIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235

Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q  +   I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++
Sbjct: 236 VAQPEL--AIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  
Sbjct: 294 VATDIAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI 353

Query: 360 IEKLIEKKVDWL 371
           IE L +K++  L
Sbjct: 354 IENLTKKRMKGL 365


>gi|255017210|ref|ZP_05289336.1| hypothetical protein LmonF_04463 [Listeria monocytogenes FSL
           F2-515]
          Length = 394

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 157/371 (42%), Positives = 233/371 (62%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++ GL  K+V +V   G+ + TPIQ KTIPL L+  D+ G AQTGTGKTA+F LPM+  
Sbjct: 4   FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIHK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++    V+    LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++ 
Sbjct: 64  IDQKSNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L ++++E LV+DEAD ML+MGFI  I+ I   VP  RQTLL
Sbjct: 121 PQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D ++++ E F+ +P+ I +     TA  IE  FV  + +  +K  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+F   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA+
Sbjct: 239 -APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E+
Sbjct: 298 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 357

Query: 363 LIEKKVDWLNG 373
             +K++  L  
Sbjct: 358 TTKKRMQPLQA 368


>gi|162148995|ref|YP_001603456.1| cold-shock DEAD box protein A [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209545253|ref|YP_002277482.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787572|emb|CAP57168.1| putative cold-shock DEAD box protein A [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532930|gb|ACI52867.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 423

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 161/392 (41%), Positives = 238/392 (60%), Gaps = 17/392 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L+  ++ A+ + GY  PTPIQ   IP +L   D+ G+AQTGTGKTA+F LP+L  
Sbjct: 4   FADLQLAEPLLRALNEEGYTTPTPIQAGAIPHLLAGRDLLGLAQTGTGKTAAFALPILQR 63

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L     RA  +  R L+L PTRELA+Q+ ++F+ Y ++  L+  ++ GG+    Q + + 
Sbjct: 64  LLTHHRRANPKGARVLVLAPTRELASQIDESFKSYARHMRLSHTVIFGGVGQGRQVEAMR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVL+  PGR+LD   +G + ++ +E+LV+DEADRMLDMGF+  I+ I + +P  RQT
Sbjct: 124 RGVDVLVAAPGRLLDLMGQGHIDLSGLEVLVLDEADRMLDMGFVRDIRRIVAELPRDRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCALLQQL 238
           LLFSATM   +  ++   L++P  ++V  PSST + I     FV T    +K+ AL  QL
Sbjct: 184 LLFSATMPKSIADLAHGLLRDPATVQVTPPSSTVDRIRQAVMFVDT---DNKRAAL--QL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L     ++  ++F   K     +   L   G    AIHGN  Q +R + ++ F+ G +++
Sbjct: 239 LVDSPKVERAVVFTLMKHEANKVAAFLNDHGIIAEAIHGNKSQGARERAMAGFRSGAVKV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ DV HVFN+D+PN  E+Y+HRIGRT RAGR G A +L   E    + 
Sbjct: 299 LVATDIAARGIDVDDVTHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSLCDAEQRAWLR 358

Query: 359 AIEKLIEKKVDWLN--------GDLSSLNPPL 382
            IEK I KK+  +          + S+L PP+
Sbjct: 359 DIEKAIGKKIPVVQEHPYHSEAAENSTLRPPV 390


>gi|150025749|ref|YP_001296575.1| DEAD-box ATP dependent DNA helicase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772290|emb|CAL43768.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
           [Flavobacterium psychrophilum JIP02/86]
          Length = 414

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 156/371 (42%), Positives = 235/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  +  AV + GY+  TPIQ ++IP++L   D+ G AQTGTGKTA+F +P++
Sbjct: 1   MLFEDLSLSKSIQRAVFEEGYLSATPIQEQSIPIILAGQDLIGCAQTGTGKTAAFAIPII 60

Query: 61  TILEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L +      + ++ RTL++ PTRELA Q+ ++F+ YGK  NL    + GG+    Q +
Sbjct: 61  HNLHRIVGSSKKEKLIRTLVVTPTRELAVQIGESFDTYGKYTNLKQLTIFGGVSQNPQVE 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L+ G D+LI TPGR+LD   +G + ++++  LV+DEAD+MLDMGFI  ++ I  L P  
Sbjct: 121 QLKSGIDILIATPGRLLDLHKQGFINLDHMHHLVLDEADQMLDMGFINDVKKIVKLTPKN 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM   +++++E FL +P  ++V   SST ET++      Y   + K  LL  
Sbjct: 181 RQTLLFSATMPIAIRELAEMFLTDPATVQVAPVSSTIETVDQRLY--YVDKADKRQLLYH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++ ++ + N ++F   K    N+  +L+KQG +  AIHG+  Q +R + L NFK     
Sbjct: 239 IIK-EEKLSNILVFSRTKHGADNIAKALKKQGLNAEAIHGDKSQNARQRALDNFKNKACD 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  + +V NFD+PN  E Y+HRIGRTGRAGR G A +   K++  + 
Sbjct: 298 ILVATDIAARGIDIEFLPYVINFDLPNIPETYVHRIGRTGRAGREGMAISFCGKDEEGYW 357

Query: 358 DAIEKLIEKKV 368
             I KL + KV
Sbjct: 358 KDIIKLTKAKV 368


>gi|327481186|gb|AEA84496.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri DSM 4166]
          Length = 556

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 148/367 (40%), Positives = 233/367 (63%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+   V+ A+   GY +P+PIQ + IP++L  HD+ G AQTGTGKTA+F LP+L+ 
Sbjct: 8   FAALGIHSAVLAAISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAFALPILSK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ LIL PTRELA QVA  FE Y K   +++V  + GG P   Q K + +
Sbjct: 68  IDPAK---REPQALILAPTRELALQVATAFETYSKQMPDVSVVAIYGGAPMGPQLKAIRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH +R   L++ I  LV+DEAD ML +GF+  ++ I   +P +RQ++
Sbjct: 125 GAQVIVATPGRLVDHLSRNSELLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQSV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L+ P+ I++   + T   IE   +  +A    +  L  +LL+ 
Sbjct: 185 LFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVL--RLLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 243 ED-FDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVARITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKV 368
           ++  +KV
Sbjct: 362 RVTNQKV 368


>gi|284048361|ref|YP_003398700.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
           DSM 20731]
 gi|283952582|gb|ADB47385.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
           DSM 20731]
          Length = 544

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 156/382 (40%), Positives = 234/382 (61%), Gaps = 10/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L  K++ A+ + G+ +P+PIQ   IP+ L+  D+ G AQTGTGKTA+F +P   I
Sbjct: 21  FEDLNLDRKILAALKEMGFEEPSPIQKGAIPMALEGEDLIGQAQTGTGKTAAFGIP---I 77

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++K   + R  + L++ PTREL  QVAD   K GK   + V  + GG P E Q + L+RG
Sbjct: 78  IQKINEKDRHIQALVMSPTRELCIQVADEISKIGKTKRIRVLPVYGGQPIERQIRSLKRG 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH  RG + +  +  LV+DEAD MLDMGF+  ++NI   VP  RQT+L
Sbjct: 138 IQVVIGTPGRLLDHIRRGTIDLEYVNFLVLDEADEMLDMGFVDDMENIIKNVPPERQTML 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +  +S+ +++ PK + ++    TA TI+  +  T  +    C    ++L + 
Sbjct: 198 FSATMPRPILSISKKYMRAPKVVAIHKEVVTAPTIDQYYYETRDKVDGLC----RILDTT 253

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D  K  IIFC  KK V  L  +L  +G+    +HG++ Q  R +++  F+ G + ++VA+
Sbjct: 254 DDCKM-IIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSGQVDILVAT 312

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI ++ HV NFDVP+ +E+Y+HRIGRTGRAG  G A T +   + + +  IE+
Sbjct: 313 DVAARGLDIDNITHVVNFDVPSDSESYVHRIGRTGRAGNTGVALTFITPREFRQLKLIER 372

Query: 363 LIEKKVDWLNGDLSSLNPPLEK 384
            I+ K+  + G L +    LE+
Sbjct: 373 SIKTKI--IRGTLPTDASVLER 392


>gi|260433348|ref|ZP_05787319.1| dead/deah box helicase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417176|gb|EEX10435.1| dead/deah box helicase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 416

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 159/414 (38%), Positives = 243/414 (58%), Gaps = 12/414 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGL+P +  A+  A + +PTPIQ + IPL ++ HD+ G+AQTGTGKT +F LP++ 
Sbjct: 3   DFDMLGLAPALNDALARAKFTQPTPIQNQAIPLAMEGHDILGLAQTGTGKTLAFGLPLID 62

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L  + G+   +  + LIL PTREL  Q+AD+         L VA ++GG     Q   L
Sbjct: 63  HLLAQPGKPAPKTAKALILAPTRELVNQIADSLRSLTTKTKLRVATVVGGQSINKQIMFL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR++D  +RG + + ++  LV+DEAD+MLDMGFI  ++ I   +   RQ
Sbjct: 123 SRGTDILVATPGRLIDLMDRGAVDLGSVRRLVLDEADQMLDMGFIHALRRIAPELGTPRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCALLQQ 237
           T+LFSATM  +++++S  +L NP+R++V+ P   A+ I     FV+   +  K    L+Q
Sbjct: 183 TMLFSATMPKQMEELSRAYLTNPQRVQVSPPGKAADKITQSVHFVSKPGKPEK----LRQ 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L SQDT    ++F   K     L   L   G++  +IHGN  Q  R + +  F+ G I 
Sbjct: 239 IL-SQDTDALTLVFARTKHGAEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRAGEIT 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DIP V +V N+D+P   +NY+HRIGRT RAGR G+A    A ++   +
Sbjct: 298 VLVATDVAARGIDIPGVAYVINYDLPEVPDNYVHRIGRTARAGREGEAIAFCAPDEFDLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
             I+KL++ ++   +G     +   E      H   R+  P PQ + G   R++
Sbjct: 358 RQIQKLMKIQIPVASGTAPEAS---ETTKPGGHQRNRRRGPKPQGAPGAANRRR 408


>gi|69248308|ref|ZP_00604710.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Enterococcus faecium DO]
 gi|257878842|ref|ZP_05658495.1| helicase [Enterococcus faecium 1,230,933]
 gi|257881478|ref|ZP_05661131.1| helicase [Enterococcus faecium 1,231,502]
 gi|257890700|ref|ZP_05670353.1| helicase [Enterococcus faecium 1,231,410]
 gi|258615088|ref|ZP_05712858.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecium DO]
 gi|293560261|ref|ZP_06676758.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
 gi|294621795|ref|ZP_06700954.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
 gi|314938932|ref|ZP_07846197.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
 gi|314943517|ref|ZP_07850284.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
 gi|314948188|ref|ZP_07851582.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
 gi|314951548|ref|ZP_07854594.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
 gi|314991589|ref|ZP_07857065.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
 gi|314994922|ref|ZP_07860049.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
 gi|68194452|gb|EAN08953.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Enterococcus faecium DO]
 gi|257813070|gb|EEV41828.1| helicase [Enterococcus faecium 1,230,933]
 gi|257817136|gb|EEV44464.1| helicase [Enterococcus faecium 1,231,502]
 gi|257827060|gb|EEV53686.1| helicase [Enterococcus faecium 1,231,410]
 gi|291598627|gb|EFF29685.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
 gi|291605711|gb|EFF35148.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
 gi|313590904|gb|EFR69749.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
 gi|313593873|gb|EFR72718.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
 gi|313596242|gb|EFR75087.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
 gi|313597889|gb|EFR76734.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
 gi|313641641|gb|EFS06221.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
 gi|313645321|gb|EFS09901.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
          Length = 503

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 156/384 (40%), Positives = 237/384 (61%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LSP+++ +V  AG+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKELELSPELLKSVERAGFEEATPIQAETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R  ++    L++ PTRELA Q  +   + G++  + V  + GG     Q + L+
Sbjct: 61  EKIDPDRHELQ---GLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  ++ LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F++NP  +++     TA+ I+  +V   A+  +K  ++ +L  
Sbjct: 178 LLFSATMPPAIKNIGVKFMKNPHHVKIKAKEMTADLIDQYYVR--AKEYEKFDIMTRLFD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 236 VQ-TPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       +++L PP EK
Sbjct: 355 ENLTKKR-------MTTLRPPTEK 371


>gi|310641357|ref|YP_003946115.1| dead/deah box helicase domain-containing protein [Paenibacillus
           polymyxa SC2]
 gi|309246307|gb|ADO55874.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
           polymyxa SC2]
          Length = 525

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 147/366 (40%), Positives = 233/366 (63%), Gaps = 6/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  L PKV+ A+ + G+ + TPIQ K+IP+ LQ  D+ G AQTGTGKTA+F +PM+  
Sbjct: 4   FAEFDLEPKVIQAITELGFEEATPIQSKSIPIALQGKDMIGQAQTGTGKTAAFGIPMINK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + K   ++R    LI+ PTRELA QVA+  EK  +   L    + GG     Q + L++ 
Sbjct: 64  ISKNDEKIR---ALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRALKKK 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++I TPGR+LDH NR  + + ++  +V+DEAD MLDMGF+  IQ+I   VP  RQT+L
Sbjct: 121 PQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQTML 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +++++E FL++P+ + V     +A  I+  ++    +  +K   L +L+   
Sbjct: 181 FSATMPPNIKRLAEQFLKDPEHVSVIPKQVSAPLIDQAYIEVPER--QKFEALSRLI-DM 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           ++ +  I+F   K+ V  L  +L+K+G+S   +HG++ Q  R  ++  F++G+I ++VA+
Sbjct: 238 ESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  V HV NFD+P   E+Y+HRIGRTGRAG+ G+A++ V   +I H+  IE+
Sbjct: 298 DVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHFIER 357

Query: 363 LIEKKV 368
           +   ++
Sbjct: 358 VTRHRI 363


>gi|332704723|ref|ZP_08424811.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554872|gb|EGJ51916.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 517

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 169/430 (39%), Positives = 255/430 (59%), Gaps = 21/430 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    L  +++  +L AGY  PTPIQ + IP VL   DV G+AQTGTGKTA+FVLP+L
Sbjct: 1   MSFDSFSLDQRIMAGILAAGYTTPTPIQTRAIPAVLAGKDVMGLAQTGTGKTAAFVLPLL 60

Query: 61  TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L    A  R P R L+L PTRELA Q+  +F   GK   +  A++IGG+    Q K L
Sbjct: 61  QRLLNDNAPTRGPIRVLVLAPTRELAVQIHQSFFGLGKQTGIRSAVVIGGVGAMPQIKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R A V +  PGR++D  N+G + ++ +  LV+DEADRMLDMGF+P ++ + + +P  RQ
Sbjct: 121 -RQATVAVACPGRLVDLMNQGAVDLSKVSALVLDEADRMLDMGFLPDVRKVMAKLPRQRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM  E++ ++E+ L++P  ++V+  ++ A T+ H         S+K  LL++LL
Sbjct: 180 NMLFSATMPAEIRSLAESGLRDPVTVQVSN-TAPAATVSHALYPVAG--SRKQDLLEKLL 236

Query: 240 QSQDTMKN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              D  KN  ++F   K     L   L  +GFSV ++ GN+ Q  R + +  F+ G  ++
Sbjct: 237 N--DLGKNSALVFTRTKHRAKGLAQKLAGKGFSVTSLQGNLSQGRRQEAMDGFRNGKYRV 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARG+D   V  V NFD+P+ AE Y HRIGRTGRA R+G+A +LVA ED   + 
Sbjct: 295 MVATDIAARGIDCERVSLVVNFDLPDTAEAYTHRIGRTGRAERNGEAVSLVAPEDESQVK 354

Query: 359 AIEKLIEKKVD--WLNG--DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
            IE+ +  +++   L+G  D ++  P  +     Q +  R+  P P+K+        + +
Sbjct: 355 FIERSLNLRIERKRLDGFSDSAARAPQYDSQPRTQQS--RRPGPAPRKAI-------DSA 405

Query: 415 SQKSHIPLKE 424
           + KS +P++ 
Sbjct: 406 ATKSLLPVRS 415


>gi|319938171|ref|ZP_08012569.1| ATP-dependent RNA helicase RhlE [Coprobacillus sp. 29_1]
 gi|319806692|gb|EFW03341.1| ATP-dependent RNA helicase RhlE [Coprobacillus sp. 29_1]
          Length = 437

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 157/371 (42%), Positives = 229/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   +  A+    Y + TPIQ + IPL+L+  D+ G A+TGTGKTA+F LP+L
Sbjct: 1   MKFKELKLIEPLQMAIEKLNYTEATPIQEQAIPLLLEGRDLLGCAKTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L       + PRT   LIL PTRELA Q+ + F+      NL   ++ GG+   +Q  
Sbjct: 61  QKLYLRDESEKYPRTIKALILAPTRELAMQIDETFQSMNSFVNLKSTVIFGGVRQGSQVT 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           K+ERG DVLI TPGR+ D + +G L +++IE  V+DEADRMLDMGFI  I+ I   +P  
Sbjct: 121 KIERGIDVLIATPGRLSDLYKQGLLDLSHIEYFVLDEADRMLDMGFINDIRRIMKYIPKQ 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT+  E+Q + +  L NP+++ V++   T E I+      Y   + K  LL +
Sbjct: 181 RQTMLFSATLPKEIQHLIDEILNNPEKVMVSSGQMTVERIQQSLY--YVDKANKAKLLIK 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL++   + N I+F   K+N   LC  L++ G    AIHG+  Q +R++ L+ FKE  ++
Sbjct: 239 LLENPQ-IYNAIVFVRTKRNANTLCKKLQRAGIEAEAIHGDKSQNARVRALNRFKEDKVR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+  + HV NFD+P +AENY+HRIGRT RAG  G A T    ++   +
Sbjct: 298 VLVATDIAARGIDVDHLTHVVNFDLPEQAENYVHRIGRTARAGADGTAITFCCFQEKSDL 357

Query: 358 DAIEKLIEKKV 368
             +EK I +K+
Sbjct: 358 SEVEKFIGEKI 368


>gi|116748890|ref|YP_845577.1| DEAD/DEAH box helicase domain-containing protein [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697954|gb|ABK17142.1| DEAD/DEAH box helicase domain protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 471

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 162/374 (43%), Positives = 232/374 (62%), Gaps = 13/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS +++ A+ D  Y  PTPIQ + +P++L   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFHSLGLSAELLRAIADQHYKHPTPIQQQAVPVILDGKDVLAGAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L K R R +     R LIL PTRELAAQV ++   YGK   L  A++ GG+    Q  
Sbjct: 61  QLLSK-RPRTKGKTSVRALILTPTRELAAQVEESVASYGKYLPLKAAVVHGGVNINPQIA 119

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL RG D+L+ TPGR+LDH  +  L +  +EILV+DEADRMLDMGFI  I+ I +L+P  
Sbjct: 120 KLRRGIDILVATPGRLLDHVQQRTLDLCAVEILVLDEADRMLDMGFIRDIRKILALLPVR 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKKCAL 234
           RQ LLF AT +DE++ ++E+ L++P  IE    NTP+ +   + H          +K  L
Sbjct: 180 RQNLLFFATFSDEIKTLAEDLLRSPVLIETERRNTPAESVAQLIHPV-----DRVRKREL 234

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L+ S +  +  ++F   K     L   LE  G    AIH N  Q +R + L++FK G
Sbjct: 235 LSFLIGS-NNWRQVLVFTRTKHGADRLTRQLEHDGIRAAAIHSNKSQATRTRSLADFKHG 293

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            ++++VA+D+AARGLDI  + HV NF++P+ + +Y+HRIGRTGRA R G A +LV+ ++ 
Sbjct: 294 DVRVLVATDIAARGLDIDHLPHVVNFELPSVSRDYVHRIGRTGRAERSGTAISLVSIDER 353

Query: 355 KHIDAIEKLIEKKV 368
           + +  IE+L+ + +
Sbjct: 354 EQLKEIERLLNRAI 367


>gi|149012680|ref|ZP_01833656.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP19-BS75]
 gi|168483538|ref|ZP_02708490.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1873-00]
 gi|169832933|ref|YP_001694988.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6]
 gi|194396853|ref|YP_002038215.1| ATP-dependent RNA helicase [Streptococcus pneumoniae G54]
 gi|225857209|ref|YP_002738720.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031]
 gi|225859340|ref|YP_002740850.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585]
 gi|147763280|gb|EDK70218.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP19-BS75]
 gi|168995435|gb|ACA36047.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6]
 gi|172043152|gb|EDT51198.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1873-00]
 gi|194356520|gb|ACF54968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae G54]
 gi|225721382|gb|ACO17236.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585]
 gi|225724473|gb|ACO20325.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031]
          Length = 524

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 153/372 (41%), Positives = 234/372 (62%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + NIE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQNIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235

Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q  +   I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++
Sbjct: 236 VAQPEL--AIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  
Sbjct: 294 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI 353

Query: 360 IEKLIEKKVDWL 371
           IE L +K++  L
Sbjct: 354 IENLTKKRMKGL 365


>gi|108800931|ref|YP_641128.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
 gi|119870071|ref|YP_940023.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           KMS]
 gi|126436556|ref|YP_001072247.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           JLS]
 gi|108771350|gb|ABG10072.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. MCS]
 gi|119696160|gb|ABL93233.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. KMS]
 gi|126236356|gb|ABN99756.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. JLS]
          Length = 557

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 150/368 (40%), Positives = 232/368 (63%), Gaps = 10/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL + P+V+ AV D GY  P+ IQ  TIP +L   DV G+AQTGTGKTA+F +P+L+ 
Sbjct: 15  FADLQIHPEVLRAVTDVGYETPSAIQAATIPAMLAGSDVVGLAQTGTGKTAAFAIPILSK 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++      R  + L+L PTRELA QVA+ F +YG +  + V  + GG  +  Q   L+RG
Sbjct: 75  IDPNS---RATQALVLAPTRELALQVAEAFGRYGAHLPVNVLPVYGGSSYGPQMAGLKRG 131

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A V++ TPGR++DH  +G L +++++ +V+DEAD ML MGF   ++ I S  P  +Q  L
Sbjct: 132 AQVVVGTPGRVIDHLEKGSLDLSHLDYMVLDEADEMLQMGFAEDVERILSDTPEYKQVAL 191

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   ++K+++ +L +P  + V + + TAE I   ++     Y +K   L +LL+++
Sbjct: 192 FSATMPPGIKKITKKYLHDPVEVTVKSKTQTAENITQRYIQV--SYPRKMDALTRLLETE 249

Query: 243 --DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M   I+F   K+    +   L  +GF+  AI+G+I Q  R + +S  K+G+I ++V
Sbjct: 250 QGDGM---IVFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVRERTISQLKDGSIDILV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV NFD+P+  E+Y+HRIGRTGRAGR G A   V   +   +++I
Sbjct: 307 ATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLNSI 366

Query: 361 EKLIEKKV 368
           E++  +K+
Sbjct: 367 ERVTRQKL 374


>gi|194334361|ref|YP_002016221.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris
           aestuarii DSM 271]
 gi|194312179|gb|ACF46574.1| DEAD/DEAH box helicase domain protein [Prosthecochloris aestuarii
           DSM 271]
          Length = 418

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 156/385 (40%), Positives = 237/385 (61%), Gaps = 8/385 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L +   +  A+ + GY  PTPIQ + IP++L+  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MGFSSLNIIDPIARALREEGYATPTPIQAEAIPVILEGSDLLGCAQTGTGKTAAFAIPLL 60

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L +     + R  R L++ PTRELA Q+ ++F+ YG++  LT  ++ GG+    Q   
Sbjct: 61  QLLSERNTYEKKRKIRALVVTPTRELAIQIGESFKAYGRHTGLTNRVIFGGVNQNPQAAS 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+++ TPGR+LD   +G L + ++EILV+DEADRMLDMGFI  I+ I + +P  +
Sbjct: 121 LRNGVDIVVATPGRLLDLMGQGHLHLRDVEILVLDEADRMLDMGFIHDIRKILAALPEKK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+ +++   L NP ++ V   SST ETI+      +     K  LL  L
Sbjct: 181 QSLFFSATMPSEIVRLAGTILHNPAKVSVTPVSSTVETIQQQVY--FVDKGNKNRLLVHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ Q ++K  ++F   K     +   L K   +  AIHGN  Q +R + L+NFK+ + ++
Sbjct: 239 LKDQ-SIKTALVFTRTKHGADKVVKFLLKHDITAEAIHGNKGQNARQRALNNFKKQSTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + +V NFD+ N AE Y+HRIGRTGRAG  G A +    E+  ++ 
Sbjct: 298 LVATDIAARGIDVDALAYVINFDMSNMAETYVHRIGRTGRAGAEGTAISFCDAEEKAYLC 357

Query: 359 AIEKLIEKKVDWLNGD---LSSLNP 380
            +EKLI KK+  ++     L+ LNP
Sbjct: 358 DVEKLIAKKIPVIDRHPFPLTDLNP 382


>gi|226223484|ref|YP_002757591.1| ATP-dependent RNA helicase [Listeria monocytogenes Clip81459]
 gi|225875946|emb|CAS04650.1| Putative ATP-dependent RNA helicase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|328467139|gb|EGF38229.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 1816]
 gi|328475471|gb|EGF46234.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 220]
          Length = 517

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 157/371 (42%), Positives = 232/371 (62%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++ GL  K+V +V   G+ + TPIQ KTIPL L   D+ G AQTGTGKTA+F LPM+  
Sbjct: 4   FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++    V+    LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++ 
Sbjct: 64  IDQKSNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L ++++E LV+DEAD ML+MGFI  I+ I   VP  RQTLL
Sbjct: 121 PQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D ++++ E F+ +P+ I +     TA  IE  FV  + +  +K  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+F   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA+
Sbjct: 239 -APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E+
Sbjct: 298 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 357

Query: 363 LIEKKVDWLNG 373
             +K++  L  
Sbjct: 358 TTKKRMQPLQA 368


>gi|16799933|ref|NP_470201.1| hypothetical protein lin0859 [Listeria innocua Clip11262]
 gi|217965039|ref|YP_002350717.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Listeria monocytogenes HCC23]
 gi|290892943|ref|ZP_06555933.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-071]
 gi|16413310|emb|CAC96091.1| lin0859 [Listeria innocua Clip11262]
 gi|217334309|gb|ACK40103.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Listeria monocytogenes HCC23]
 gi|290557519|gb|EFD91043.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-071]
          Length = 516

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 157/371 (42%), Positives = 232/371 (62%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++ GL  K+V +V   G+ + TPIQ KTIPL L   D+ G AQTGTGKTA+F LPM+  
Sbjct: 4   FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++    V+    LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++ 
Sbjct: 64  IDQKSNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L ++++E LV+DEAD ML+MGFI  I+ I   VP  RQTLL
Sbjct: 121 PQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D ++++ E F+ +P+ I +     TA  IE  FV  + +  +K  +L +LL  Q
Sbjct: 181 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+F   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA+
Sbjct: 239 -APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E+
Sbjct: 298 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 357

Query: 363 LIEKKVDWLNG 373
             +K++  L  
Sbjct: 358 TTKKRMQPLQA 368


>gi|71906757|ref|YP_284344.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Dechloromonas aromatica RCB]
 gi|71846378|gb|AAZ45874.1| ATP-dependent RNA helicase CsdA [Dechloromonas aromatica RCB]
          Length = 606

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 144/361 (39%), Positives = 227/361 (62%), Gaps = 6/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  ++  +   GY  P+PIQ + IP++L+ HD+ G+AQTGTGKTA+F LP++  
Sbjct: 8   FADLGLSETLLQTLTQIGYETPSPIQAQCIPVLLEGHDLIGMAQTGTGKTAAFALPLM-- 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
            E+   ++  P+ LIL PTRELA QVA+  + Y KN     V  + GG  +  Q K+L R
Sbjct: 66  -EQIDVKLTKPQALILTPTRELAIQVAEALQTYAKNLPGFHVLPIYGGQSYTIQLKQLSR 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  R  L +++++ +V+DEAD ML MGFI  ++ I    P   QT 
Sbjct: 125 GAHVIVGTPGRVMDHLERKTLNLDHLKTMVLDEADEMLRMGFIDDVEWILERTPAQHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +++++V++ +L  P+ I++ + ++T   I   +      +  K   L ++L+ 
Sbjct: 185 LFSATMPEQIRRVAQKYLVEPREIKIKSATATVAAIRQVYWQVSGMH--KLDALTRILEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++     IIF   K   V L   L  +G++  A++G+++Q+ R +++   K G + +++A
Sbjct: 243 EEDFDAAIIFVRTKTATVELADKLSARGYAAAALNGDLNQQMRERVIEQLKSGALDIVIA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+P V HV N+D+P   E Y+HRIGRTGRAGR G A   VA  +I+ +  IE
Sbjct: 303 TDVAARGIDVPRVSHVVNYDIPYDTEAYVHRIGRTGRAGRTGNAILFVAPREIRMLRTIE 362

Query: 362 K 362
           +
Sbjct: 363 R 363


>gi|326791603|ref|YP_004309424.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
 gi|326542367|gb|ADZ84226.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
           5427]
          Length = 477

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 153/370 (41%), Positives = 231/370 (62%), Gaps = 10/370 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL   ++ A    G+ KPTP+Q + IP VL++ D+   +QTG+GKTA+F +P+ 
Sbjct: 1   MSFKNYGLEKSLLKAATLLGFNKPTPVQERVIPEVLRKQDLIVQSQTGSGKTAAFAIPIC 60

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
              I E+ +     P+ L+L PTRELA QV ++F + G+   +    L G  PFE Q K+
Sbjct: 61  QEVIWEENK-----PQALVLTPTRELAIQVKEDFFQIGRFKRIKAVGLYGKAPFEVQQKE 115

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +   V++ TPGR+LDH  RG L  ++I  LVIDEAD ML MGFI  +++I + +P  R
Sbjct: 116 LSQKTHVVVGTPGRVLDHLERGTLEASHISYLVIDEADEMLRMGFIDQVESIIAALPLNR 175

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            TLLFSATM   +Q++ E +L+ PK I + T  S    IE   + T+ Q   K A+L+ +
Sbjct: 176 VTLLFSATMAPHIQQLCEKYLRTPKTIHITTDLSKPNNIEEIGIETHEQ--TKLAVLEAV 233

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  ++ IIFCN+K+ V  +   L    + V  IHG+++Q+ R  ++ +F++G  + 
Sbjct: 234 TIVENP-ESCIIFCNRKERVEMVWKRLNDLNYGVGKIHGDMEQKQRFAVMEDFRKGRFRY 292

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV NFDVP +AENY+HR+GRTGRAGR GK F  +  ED +++ 
Sbjct: 293 LVATDVAARGIDIDHITHVINFDVPEQAENYVHRMGRTGRAGRSGKTFIFIQPEDKRNLA 352

Query: 359 AIEKLIEKKV 368
            IE    +K+
Sbjct: 353 VIESYTMRKI 362


>gi|163859073|ref|YP_001633371.1| putative ATP-dependent RNA helicase [Bordetella petrii DSM 12804]
 gi|163262801|emb|CAP45104.1| putative ATP-dependent RNA helicase [Bordetella petrii]
          Length = 584

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 154/372 (41%), Positives = 228/372 (61%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+  AG+  PTP+Q   IP  L  HD+   +QTG+GKTA+F+LP L
Sbjct: 1   MSFETLGLAPTLLSALQAAGFSAPTPVQAAAIPQALAGHDLMVSSQTGSGKTAAFMLPAL 60

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNK 117
             +  + G   V + + L+L PTRELA QV +    YG+N   L  A ++GG+P+ AQ K
Sbjct: 61  NRIAGQPGNKGVGV-QVLVLTPTRELALQVTEATGSYGRNLPGLRTATVVGGMPYGAQLK 119

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L R  DVL+ TPGR++DH   G++ +N +  LV+DEADRMLDMGFI  I+ I   +P  
Sbjct: 120 ALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPQE 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQ 236
           RQTLLFSAT+   + K++   ++ P+RIE+         I    +  YA   S K  LL 
Sbjct: 180 RQTLLFSATLDGTVAKLAARMMREPQRIEMAGQKEKHTNITQSLL--YADDASHKMQLLD 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +L+    +   I+F   K+   +L   L  QGF+  A+HG+++QR R + L+  + G +
Sbjct: 238 HVLRDA-KLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLTQLQRGQL 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARG+D+  + H  NFD+P +AE+Y+HRIGRTGRAGR G+A+TL    +   
Sbjct: 297 RILVATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRTGRAGRDGQAYTLATHAERHK 356

Query: 357 IDAIEKLIEKKV 368
           +  IE  I + +
Sbjct: 357 VRRIEHYIGQSI 368


>gi|119468940|ref|ZP_01611965.1| putative ATP-dependent RNA helicase (rhlE-like) [Alteromonadales
           bacterium TW-7]
 gi|119447592|gb|EAW28859.1| putative ATP-dependent RNA helicase (rhlE-like) [Alteromonadales
           bacterium TW-7]
          Length = 415

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 175/403 (43%), Positives = 245/403 (60%), Gaps = 19/403 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P ++ A+    Y  PT IQIKTIP +L  +DV G AQTGTGKTA+FVLP+L  
Sbjct: 6   FSSLNLDPLLLTAIEQNNYTTPTAIQIKTIPPILAGNDVMGSAQTGTGKTAAFVLPLLHK 65

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           L       E G ARV     +IL PTRELA QV  +FEKY +  N+  AL  GG     Q
Sbjct: 66  LLNTPKKDEPGIARV-----VILTPTRELAQQVFASFEKYAQGSNVQGALAYGGASIGPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K L + A V++ TPGR+LDH  +G +++++++ LV DEADRMLDMGFI  I+ I   +P
Sbjct: 121 IKAL-KTAQVIVATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIKRILRHIP 179

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT  D +  +SE  L+NP+ IEV+  +S A  +E    A      +K  L+
Sbjct: 180 GDRQTLLFSATFDDSVFGLSEKLLKNPELIEVDKRNSAAVEVEQIIYAV--DEDRKRELV 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             ++  ++  +  +IF   K+    L   + K G    +IHG+  Q +R + L NFKEGT
Sbjct: 238 SHMIGMKN-WRQVLIFTRTKQMADKLAKEMCKDGLKTESIHGDKSQGARDRALQNFKEGT 296

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            +++VA+D+AARGLDIP + +V NF++P  AE+Y+HRIGRTGRAG  G A +LV+ ++  
Sbjct: 297 TRVLVATDVAARGLDIPALKYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSIDEQW 356

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKN 396
            ++ IE L++ ++   WL G    LN    K +    N ARK+
Sbjct: 357 LLEEIEVLLDTRLAPQWLEGYEPDLNKA-PKDNRKNTNKARKD 398


>gi|156977147|ref|YP_001448053.1| hypothetical protein VIBHAR_05933 [Vibrio harveyi ATCC BAA-1116]
 gi|156528741|gb|ABU73826.1| hypothetical protein VIBHAR_05933 [Vibrio harveyi ATCC BAA-1116]
          Length = 421

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 161/412 (39%), Positives = 254/412 (61%), Gaps = 15/412 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++FADLG+  ++V  +     V PTP+Q K+IP VL+  D+   AQTGTGKTA+F LP++
Sbjct: 7   VNFADLGIEQQLVDTLSGMNIVTPTPVQEKSIPPVLEGKDLLAAAQTGTGKTAAFGLPII 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++ + R   P+ LIL PTRELA QV DN  +Y  N +L +  + GG     Q KKLE
Sbjct: 67  QSVQQ-KKRNGAPQALILVPTRELAQQVMDNLTQYAANTDLKIVCVYGGTSIGVQKKKLE 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+LI TPGR+LDH   G +++    ILV+DEADRMLDMGF P +Q I   +P  +QT
Sbjct: 126 EGADILIATPGRLLDHLFNGNVIIAKTGILVLDEADRMLDMGFWPDLQRILRRLPQDKQT 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++ ++   + +P  +EV+  ++TAET++           +K  LL  L+ 
Sbjct: 186 MLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPV--DKKRKRELLAYLIG 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++  +  ++F   K+    L   L+  G    +I+G+  Q +R + L  FK G ++ ++
Sbjct: 244 SRN-WQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKAGKVRALI 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V NFD+P +AE+Y+HRIGRTGRA + G A +L+++++   + AI
Sbjct: 303 ATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRARKSGLAVSLMSRDEEYLLTAI 362

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           E L+++++  +WL G   SL   +E+++  ++   R+      KS   ++RK
Sbjct: 363 ENLLDQRLPQEWLEGFEPSL---IEEVEPERNGGGRR------KSRSSEKRK 405


>gi|205372271|ref|ZP_03225085.1| hypothetical protein Bcoam_02010 [Bacillus coahuilensis m4-4]
          Length = 499

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 154/379 (40%), Positives = 237/379 (62%), Gaps = 13/379 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L LSP ++ ++   G+ + TPIQ  TIPL L+  D+ G AQTGTGKTA+F +P++  
Sbjct: 4   FSELNLSPSMLKSINRMGFEEATPIQAGTIPLSLEGKDIIGQAQTGTGKTAAFGIPLVEK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     V+    LI+ PTRELA QV++   K G +  + V  + GG     Q + +++G
Sbjct: 64  IDTKNTNVQ---GLIIAPTRELAIQVSEELYKVGYDKRVRVLAVYGGQDINRQIRAMKKG 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH NR  L ++ +  LV+DEAD ML+MGFI  I++I   VP  RQTLL
Sbjct: 121 PHIIVGTPGRLLDHINRRTLKLDQVHTLVLDEADEMLNMGFIDDIESILKNVPEGRQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   ++K++ENF+ NP+ ++V +   T   I+  FV   AQ  +K  +L +LL +Q
Sbjct: 181 FSATMPGPIRKIAENFMTNPETVKVKSKEMTVSLIDQYFVK--AQEREKFDILARLLDTQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G+    IHG++ Q  R  +L  FKEG I+++VA+
Sbjct: 239 -SPELAIVFGRTKRRVDELSKALSIRGYQAEGIHGDLSQAKRSSVLRKFKEGRIEVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E+
Sbjct: 298 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAMTFVTPREMGYLRIVEQ 357

Query: 363 LIEKKVDWLNGDLSSLNPP 381
              K+       ++ + PP
Sbjct: 358 TTNKR-------MTPMRPP 369


>gi|108761880|ref|YP_632259.1| putative ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK
           1622]
 gi|108465760|gb|ABF90945.1| putative ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK
           1622]
          Length = 501

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 160/370 (43%), Positives = 223/370 (60%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   ++ AV   GY  PTPIQ K IP  L   DV G+AQTGTGKTA+F LP+L
Sbjct: 1   MTFDDLQLHDTLLRAVKAEGYTTPTPIQQKAIPHALAGRDVLGVAQTGTGKTAAFALPIL 60

Query: 61  TILE-KGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L  K  A    P R L+L PTRELA QV D+F  YGK   L  A++ GG+    Q + 
Sbjct: 61  QRLSAKAPAGGARPVRCLVLTPTRELAGQVGDSFGTYGKGLPLRHAVIFGGVGQNPQVQT 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G DVL+ TPGR+LD   +G + + ++E+ V+DEADRMLDMGFI  ++ +   +P  R
Sbjct: 121 LRNGVDVLVATPGRLLDLMEQGFVSLRSLEVFVLDEADRMLDMGFIHDVRRVIKALPPKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSAT+  ++  ++ + L +P R+EV   SSTAET+       + +  +K  LL  L
Sbjct: 181 QTLFFSATLPPDIVDLARSILTDPIRVEVTPASSTAETVSQQVY--FVEREQKRGLLTHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ +  +   ++F   K     +   LE  G S  AIHGN  Q +R + L  F+ GT+++
Sbjct: 239 LK-EGNIHRALVFTRTKHGANRVAKQLEGAGVSSAAIHGNKSQNARERALDEFRSGTLRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + +V N+D+PN  E Y+HRIGRTGRAG  G A +    E+  ++ 
Sbjct: 298 LVATDIAARGIDIDGLSYVVNYDLPNVPEQYVHRIGRTGRAGASGTAVSFCDAEERAYLR 357

Query: 359 AIEKLIEKKV 368
            IE+ I + V
Sbjct: 358 DIERTIRRNV 367


>gi|227357070|ref|ZP_03841440.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus
           mirabilis ATCC 29906]
 gi|227162762|gb|EEI47725.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus
           mirabilis ATCC 29906]
          Length = 611

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 236/369 (63%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS  ++ A+ D GY KP+PIQ + IP +L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 7   MTFADLGLSAPILTALNDLGYEKPSPIQQQCIPFLLDGNDVLGMAQTGSGKTAAFSLPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L++    ++ P+ L+L PTRELA QVA+  E + K+   + V  L GG  ++ Q + L
Sbjct: 67  HNLDES---LKAPQILVLAPTRELAVQVAEAIEDFSKHLPKVNVVALYGGQRYDVQLRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  V++ TPGR+LDH NRG L ++ ++ LV+DEAD ML MGFI  ++NI S +P   Q
Sbjct: 124 RQGPQVVVGTPGRLLDHLNRGTLDLSKLKGLVLDEADEMLRMGFIEDVENILSKIPAEHQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+ +PK + + +  +T   I   +  TY   ++K   L + L
Sbjct: 184 TALFSATMPEAIRRITRRFMNDPKEVRIQSSVTTRPDISQSYWMTYG--ARKNEALIRFL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +++D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K G + ++
Sbjct: 242 EAED-FDAAIIFVRTKNATLEVAETLERNGYNSAALNGDMNQSLREQTLERLKNGRLDIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 301 IATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAILFVDNRERRLLRN 360

Query: 360 IEKLIEKKV 368
           IE+ ++  +
Sbjct: 361 IERTMKMSI 369


>gi|315281538|ref|ZP_07870145.1| dead-box ATP-dependent rna helicase ydbr [Listeria marthii FSL
           S4-120]
 gi|307570401|emb|CAR83580.1| ATP-dependent RNA helicase [Listeria monocytogenes L99]
 gi|313609827|gb|EFR85263.1| dead-box ATP-dependent rna helicase ydbr [Listeria monocytogenes
           FSL F2-208]
 gi|313614811|gb|EFR88348.1| dead-box ATP-dependent rna helicase ydbr [Listeria marthii FSL
           S4-120]
          Length = 518

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 157/371 (42%), Positives = 232/371 (62%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++ GL  K+V +V   G+ + TPIQ KTIPL L   D+ G AQTGTGKTA+F LPM+  
Sbjct: 6   FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++    V+    LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++ 
Sbjct: 66  IDQKSNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L ++++E LV+DEAD ML+MGFI  I+ I   VP  RQTLL
Sbjct: 123 PQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D ++++ E F+ +P+ I +     TA  IE  FV  + +  +K  +L +LL  Q
Sbjct: 183 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+F   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA+
Sbjct: 241 -APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E+
Sbjct: 300 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 359

Query: 363 LIEKKVDWLNG 373
             +K++  L  
Sbjct: 360 TTKKRMQPLQA 370


>gi|46907098|ref|YP_013487.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47092073|ref|ZP_00229866.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 4b
           H7858]
 gi|254992756|ref|ZP_05274946.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-064]
 gi|255521719|ref|ZP_05388956.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-175]
 gi|258611720|ref|ZP_05241706.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-503]
 gi|293596169|ref|ZP_05228867.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-194]
 gi|293596832|ref|ZP_05264606.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes HPB2262]
 gi|300764074|ref|ZP_07074069.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N1-017]
 gi|46880365|gb|AAT03664.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47019513|gb|EAL10253.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 4b
           H7858]
 gi|258605664|gb|EEW18272.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-503]
 gi|293582796|gb|EFF94828.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes HPB2262]
 gi|293593090|gb|EFG00851.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-194]
 gi|300515064|gb|EFK42116.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N1-017]
 gi|332311273|gb|EGJ24368.1| ATP-dependent RNA helicase [Listeria monocytogenes str. Scott A]
          Length = 519

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 157/371 (42%), Positives = 232/371 (62%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++ GL  K+V +V   G+ + TPIQ KTIPL L   D+ G AQTGTGKTA+F LPM+  
Sbjct: 6   FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++    V+    LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++ 
Sbjct: 66  IDQKSNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L ++++E LV+DEAD ML+MGFI  I+ I   VP  RQTLL
Sbjct: 123 PQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D ++++ E F+ +P+ I +     TA  IE  FV  + +  +K  +L +LL  Q
Sbjct: 183 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+F   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA+
Sbjct: 241 -APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E+
Sbjct: 300 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 359

Query: 363 LIEKKVDWLNG 373
             +K++  L  
Sbjct: 360 TTKKRMQPLQA 370


>gi|313619814|gb|EFR91407.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
           S4-378]
          Length = 518

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 157/371 (42%), Positives = 232/371 (62%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++ GL  K+V +V   G+ + TPIQ KTIPL L   D+ G AQTGTGKTA+F LPM+  
Sbjct: 6   FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++    V+    LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++ 
Sbjct: 66  IDQKNNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L ++++E LV+DEAD ML+MGFI  I+ I   VP  RQTLL
Sbjct: 123 PQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D ++++ E F+ +P+ I +     TA  IE  FV  + +  +K  +L +LL  Q
Sbjct: 183 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+F   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA+
Sbjct: 241 -APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E+
Sbjct: 300 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 359

Query: 363 LIEKKVDWLNG 373
             +K++  L  
Sbjct: 360 TTKKRMQPLQA 370


>gi|307702062|ref|ZP_07639069.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261]
 gi|307616549|gb|EFN95739.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261]
          Length = 521

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 151/371 (40%), Positives = 233/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|294056537|ref|YP_003550195.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615870|gb|ADE56025.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 524

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 151/367 (41%), Positives = 234/367 (63%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL P+++ ++   G+ +P+PIQ +TIP+ L   D+ G++QTG+GKTA+F LP L  
Sbjct: 6   FADLGLRPELLESIQRLGFEQPSPIQARTIPVALDGSDIVGLSQTGSGKTAAFALPALHG 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL-LIGGIPFEAQNKKLER 121
           L+      +  + L+L PTRELA QV +   +         AL + GG P + Q + L++
Sbjct: 66  LDLSN---KATQVLVLCPTRELAVQVCEEIHRLSTAMPKLQALPVYGGTPIDRQIRALKK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  R  L  ++I + ++DEADRMLDMGF   ++ I   +P  RQTL
Sbjct: 123 GVHVVVGTPGRVMDHMKRKTLKTDSIRLCILDEADRMLDMGFREDMEIILDAIPQERQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   +Q + + F  + K+IE+   + T E+IE  +     +   K  ++ +LL  
Sbjct: 183 FFSATMNRGVQGLIKAFSHDAKQIEIEQKTLTVESIEQVYYEV--RNRSKVEVMCRLLDM 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T + GI+FCN K+ V ++C +L  +G++   IHG+I Q  R K++  F++  I+++VA
Sbjct: 241 EPTQR-GIVFCNTKQMVEDVCEALNARGYTADRIHGDISQGIREKVIRRFRDNAIEILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  VFN+D+P   E+Y+HRIGRTGRAGR GK+ T V   DI+ ++AIE
Sbjct: 300 TDVAARGLDIDDIELVFNYDLPYDPEDYVHRIGRTGRAGRSGKSITFVYGRDIRRLEAIE 359

Query: 362 KLIEKKV 368
           + I + +
Sbjct: 360 RYIRQSI 366


>gi|260558407|ref|ZP_05830603.1| helicase [Enterococcus faecium C68]
 gi|261207113|ref|ZP_05921802.1| helicase [Enterococcus faecium TC 6]
 gi|289567232|ref|ZP_06447617.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
 gi|293556891|ref|ZP_06675452.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
 gi|293567807|ref|ZP_06679148.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
 gi|294615128|ref|ZP_06695014.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
 gi|294617803|ref|ZP_06697416.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
 gi|260075581|gb|EEW63887.1| helicase [Enterococcus faecium C68]
 gi|260078741|gb|EEW66443.1| helicase [Enterococcus faecium TC 6]
 gi|289160980|gb|EFD08895.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
 gi|291589392|gb|EFF21199.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
 gi|291592070|gb|EFF23693.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
 gi|291595943|gb|EFF27223.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
 gi|291600975|gb|EFF31266.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
          Length = 503

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 156/384 (40%), Positives = 237/384 (61%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LSP+++ +V  AG+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKELELSPELLKSVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R  ++    L++ PTRELA Q  +   + G++  + V  + GG     Q + L+
Sbjct: 61  EKIDPDRHELQ---GLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  ++ LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F++NP  +++     TA+ I+  +V   A+  +K  ++ +L  
Sbjct: 178 LLFSATMPPAIKNIGVKFMKNPHHVKIKAKEMTADLIDQYYVR--AKEYEKFDIMTRLFD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 236 VQ-TPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       +++L PP EK
Sbjct: 355 ENLTKKR-------MTTLRPPTEK 371


>gi|197287236|ref|YP_002153108.1| ATP-dependent RNA helicase DeaD [Proteus mirabilis HI4320]
 gi|194684723|emb|CAR46715.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus
           mirabilis HI4320]
          Length = 616

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 236/369 (63%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS  ++ A+ D GY KP+PIQ + IP +L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 12  MTFADLGLSAPILTALNDLGYEKPSPIQQQCIPFLLDGNDVLGMAQTGSGKTAAFSLPLL 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L++    ++ P+ L+L PTRELA QVA+  E + K+   + V  L GG  ++ Q + L
Sbjct: 72  HNLDES---LKAPQILVLAPTRELAVQVAEAIEDFSKHLPKVNVVALYGGQRYDVQLRAL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  V++ TPGR+LDH NRG L ++ ++ LV+DEAD ML MGFI  ++NI S +P   Q
Sbjct: 129 RQGPQVVVGTPGRLLDHLNRGTLDLSKLKGLVLDEADEMLRMGFIEDVENILSKIPAEHQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+ +PK + + +  +T   I   +  TY   ++K   L + L
Sbjct: 189 TALFSATMPEAIRRITRRFMNDPKEVRIQSSVTTRPDISQSYWMTYG--ARKNEALIRFL 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +++D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K G + ++
Sbjct: 247 EAED-FDAAIIFVRTKNATLEVAETLERNGYNSAALNGDMNQSLREQTLERLKNGRLDIL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 306 IATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAILFVDNRERRLLRN 365

Query: 360 IEKLIEKKV 368
           IE+ ++  +
Sbjct: 366 IERTMKMSI 374


>gi|323492253|ref|ZP_08097411.1| putative ATP-dependent RNA helicase RhlE [Vibrio brasiliensis LMG
           20546]
 gi|323313566|gb|EGA66672.1| putative ATP-dependent RNA helicase RhlE [Vibrio brasiliensis LMG
           20546]
          Length = 427

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 158/370 (42%), Positives = 225/370 (60%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA    SP++V A+ + GY K TP+Q K IPL  + HD+   AQTGTGKTA+F LP++
Sbjct: 1   MSFASQNFSPEIVKALTECGYEKLTPVQQKAIPLARRGHDILANAQTGTGKTAAFALPIV 60

Query: 61  -TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             IL+  ++  R   R +IL PTRELA QVA N + Y K  ++    + GG     Q K 
Sbjct: 61  QNILDSDKSANRHQTRAVILTPTRELAEQVASNIQDYTKYTDIKTVAIFGGKKMATQQKA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G DVL+ TPGR+++H     + + N+E LV DEADRMLDMGFI  I+ I S V    
Sbjct: 121 LEAGVDVLVATPGRLIEHIELNNVSLANLEFLVFDEADRMLDMGFIASIEKIMSGVTTKP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT + ++ K++   L+ PKR+ V   + TA+TI H  V    +  +K  LL +L
Sbjct: 181 QTMLFSATFSTQMNKLASEILRQPKRVSVARENVTADTIAH--VVYPVEQERKRELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   K  ++F N K+    L   L+  G      HG+  Q +R + L  FK G  ++
Sbjct: 239 I-GRKNWKQVLVFVNYKETANELVKELKLDGIKAVLCHGDKAQSARRRALEEFKTGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+D+AARGLDI ++ HV NFD+P  AE+Y+HRIGRTGRAG+ G A + V +E+   + 
Sbjct: 298 MIATDVAARGLDIQNLPHVVNFDMPFLAEDYVHRIGRTGRAGQRGNAVSFVNREEELTLQ 357

Query: 359 AIEKLIEKKV 368
            +E LI +++
Sbjct: 358 QVETLIGQRI 367


>gi|270156904|ref|ZP_06185561.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
           D-4968]
 gi|289164670|ref|YP_003454808.1| ATP-dependent RNA helicase RhlE [Legionella longbeachae NSW150]
 gi|269988929|gb|EEZ95183.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
           D-4968]
 gi|288857843|emb|CBJ11689.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
           NSW150]
          Length = 421

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 167/428 (39%), Positives = 247/428 (57%), Gaps = 21/428 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   ++ ++ + GY +P+ IQI+ IP +L   DV   AQTGTGKTASFVLP+L
Sbjct: 1   MSFKSLGLIEPLLQSIDELGYKEPSSIQIQAIPKILSGKDVLASAQTGTGKTASFVLPIL 60

Query: 61  TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L  K RA     RTLIL PTRELA+QV +N  +YG+  +    ++ GG+    Q  KL
Sbjct: 61  QMLSTKPRANSNRTRTLILTPTRELASQVHENIIQYGRYLSFRSTVVFGGVKINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G ++L+ TPGR+LD +N+  +  + ++ LV+DEADRMLDMGFI  ++ I + +P  RQ
Sbjct: 121 RSGVEILVATPGRLLDLYNQRAIQFDQVDTLVLDEADRMLDMGFIHDMKRIINYLPKNRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT TDE++   +  L  P  I+V   ++T   I+          ++K ALL  L+
Sbjct: 181 NLMFSATFTDEIRSFVKTILNQPIEIDVTPRNTTVVKIKQTVHP--VDKNRKAALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++     ++F   K     L   L +      AIHGN  Q  R K L++FK G + ++
Sbjct: 239 H-RNKWNQALVFSKTKHGANKLVKQLAEAQIHAAAIHGNKSQSQRTKALNDFKSGELHIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V NFD+P  AE+Y+HRIGRTGRAG  G A +LV+ +++  + +
Sbjct: 298 VATDIAARGIDIDQLPCVVNFDLPQVAEDYVHRIGRTGRAGAIGLAISLVSADEVNQLQS 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IEKLI+ K+D +  ++    P        QHN       +PQ +     RK +   +K+ 
Sbjct: 358 IEKLIQHKLDRI--EIEDFEP--------QHN-------VPQTTISSTTRKYSQIKKKTT 400

Query: 420 IPLKESEK 427
            P  +  K
Sbjct: 401 SPYAKPHK 408


>gi|54296291|ref|YP_122660.1| hypothetical protein lpp0320 [Legionella pneumophila str. Paris]
 gi|53750076|emb|CAH11468.1| hypothetical protein lpp0320 [Legionella pneumophila str. Paris]
          Length = 414

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 162/373 (43%), Positives = 228/373 (61%), Gaps = 10/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L   +  AV + GY  PT IQ+K IPL+L  HD+ G AQTGTGKTASFVLP  
Sbjct: 1   MSFKQLALIEPLNRAVSELGYTNPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLP-- 58

Query: 61  TILEKGRARVRMPR----TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            IL+K   + +  R     LIL PTRELA Q  ++  +YGK   L  A++ GG+    Q 
Sbjct: 59  -ILQKASQQTQTSRNRAKVLILTPTRELAIQAHESIIQYGKYLTLRSAVIYGGVKSHNQI 117

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K+L+ G ++L+ TPGR+LD + +G +  + I+ LV+DEADRMLDMGFI  I+ I  L+P 
Sbjct: 118 KQLDSGLEILVATPGRLLDLYQQGAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPL 177

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT T E++ ++ N L     I++   ++  +TI+    +    +  K ALL 
Sbjct: 178 KRQNLLFSATFTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDGNH--KLALLS 235

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL  ++     ++F   K     L   L +      AIHGN  Q  R K L++FK G +
Sbjct: 236 HLLH-KNNWGQTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKV 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q ++A+D+AARG+DI  +  V NFD+P+  E+Y+HRIGRTGRAG  G A +LV+ E+IK 
Sbjct: 295 QTLIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKL 354

Query: 357 IDAIEKLIEKKVD 369
           + +IEKLI +K++
Sbjct: 355 LLSIEKLINQKLE 367


>gi|257885750|ref|ZP_05665403.1| helicase [Enterococcus faecium 1,231,501]
 gi|257821606|gb|EEV48736.1| helicase [Enterococcus faecium 1,231,501]
          Length = 503

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 156/384 (40%), Positives = 237/384 (61%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LSP+++ +V  AG+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKELELSPELLKSVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R  ++    L++ PTRELA Q  +   + G++  + V  + GG     Q + L+
Sbjct: 61  EKIDPDRHELQ---GLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  ++ LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F++NP  +++     TA+ I+  +V   A+  +K  ++ +L  
Sbjct: 178 LLFSATMPPAIKNIGVKFMKNPHHVKIKAKEVTADLIDQYYVR--AKEYEKFDIMTRLFD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 236 VQ-TPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       +++L PP EK
Sbjct: 355 ENLTKKR-------MTTLRPPTEK 371


>gi|310659566|ref|YP_003937287.1| ATP-dependent RNA helicase; cold shock [Clostridium sticklandii DSM
           519]
 gi|308826344|emb|CBH22382.1| ATP-dependent RNA helicase; cold shock [Clostridium sticklandii]
          Length = 515

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 157/366 (42%), Positives = 228/366 (62%), Gaps = 6/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL  +++ AVLD G+  PTPIQ + IPL +Q  D+ G AQTGTGKTA+F +P+L+ 
Sbjct: 4   FNELGLQEELLKAVLDMGFDSPTPIQEQIIPLAMQGIDLIGQAQTGTGKTAAFGIPLLSK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +EKG   V+    LIL PTRELA QV+    +  K  N+    + GG     Q + L++ 
Sbjct: 64  IEKGNKAVQ---ALILAPTRELALQVSQEINRLAKYKNVEAIAIYGGEDIGKQIRGLKKN 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR +DH  R  + + NI+ +++DEAD ML MGFI  I+ I   VP  RQTLL
Sbjct: 121 PQIVVATPGRFMDHMRRNTINLANIQTVILDEADEMLSMGFIEDIETILQEVPSERQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +Q VS+ F+++P+ + V   + T +TIE  ++    +  K  AL +  L   
Sbjct: 181 FSATMPKRIQSVSQKFMKSPQTVAVKNKTMTVDTIEQRYL-DLKERDKFDALCR--LMDI 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  IIF   K+ V  L  +L  +G+ V  IHG++ Q  R K+L  FK G+I+++VA+
Sbjct: 238 HCPELSIIFGRTKRRVDELSEALSIRGYDVEGIHGDMKQERREKVLRRFKRGSIKILVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HVFNFD+P   E+Y+HRIGRTGRAG+ G +FT V   + ++++ IE 
Sbjct: 298 DVAARGLDISGVSHVFNFDLPQDPESYVHRIGRTGRAGQKGISFTFVTPREREYLELIED 357

Query: 363 LIEKKV 368
             + K+
Sbjct: 358 TTKSKM 363


>gi|149377730|ref|ZP_01895465.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
 gi|149358015|gb|EDM46502.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
          Length = 503

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 172/466 (36%), Positives = 258/466 (55%), Gaps = 39/466 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL P V+ AV   GY KP+PIQ +TIP +L    + G+AQTGTGKTA+F LP+L
Sbjct: 4   LSFADLGLDPAVLEAVAAVGYEKPSPIQAQTIPALLAGKHLLGVAQTGTGKTAAFALPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           + ++   A V  P+ L+L PTRELA QVA+ F  Y   + N  V  + GG  F  Q K L
Sbjct: 64  SRID---ASVMAPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFFPQIKGL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA V++ TPGR+LDH  +G L +++++ LV+DEAD ML MGFI  ++ I +  P   Q
Sbjct: 121 RRGAQVIVGTPGRMLDHLRKGTLKLDSLKALVLDEADEMLRMGFIDDVEAILAKTPDNCQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  +++KV++ +L++   +++ + + T E I    +  YA+  +K   L ++L
Sbjct: 181 RALFSATMPPQIKKVAQTYLRDATEVKIESETRTVERISQFVLPVYAE--RKLDALTRIL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +  +   IIF   K     L   L  +G +V  ++G+++QR R + + + K G   ++
Sbjct: 239 EVE-PVDGTIIFVRTKAETTLLAEKLSARGHAVAPLNGDLNQRQREQTVEDLKRGKKDII 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+P + HV N+DVP   E YIHR+GRTGRAGR GKA  LV          
Sbjct: 298 VATDVAARGLDVPRITHVINYDVPYDTEAYIHRVGRTGRAGREGKAILLVTP-------- 349

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
                 ++  WL     + N P+E  ++   N  +K             R++ + SQ   
Sbjct: 350 ------RERSWLRTLERATNSPMESYELPSPNALKKM------------REEQFESQ--L 389

Query: 420 IPLKESEKISK----LQQDIQENDADSLGFRGNMPAFMLPKNRGKL 461
           +   E  K+ K    L +  + ND D     G +  ++     G L
Sbjct: 390 LGFAEDGKLGKAMALLDEIAERNDMDIAMVAGALACYLEASQPGSL 435


>gi|319947383|ref|ZP_08021615.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC
           700641]
 gi|319746323|gb|EFV98584.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC
           700641]
          Length = 524

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 150/371 (40%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +++IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEDIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|152974078|ref|YP_001373595.1| DEAD/DEAH box helicase domain-containing protein [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152022830|gb|ABS20600.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 511

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 155/369 (42%), Positives = 232/369 (62%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  
Sbjct: 16  FRELGLSDSLLQSVEKMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL-- 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            EK      M + +++ PTRELA QV +   K G++  + +  + GG     Q + L++ 
Sbjct: 74  -EKVDTNKEMVQGIVIAPTRELAIQVGEELYKIGQHKRVRILPIYGGQDINRQIRALKKR 132

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLL
Sbjct: 133 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 192

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + +++++E F+  P+ I+V     T   I+  ++    Q  KK  +L +LL  Q
Sbjct: 193 FSATMPEPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 250

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA+
Sbjct: 251 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 309

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   ++  +  IE+
Sbjct: 310 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGLAMLFVTPREMGQLKNIER 369

Query: 363 LIEKKVDWL 371
             ++K+D +
Sbjct: 370 TTKRKMDRM 378


>gi|322374711|ref|ZP_08049225.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9)
           [Streptococcus sp. C300]
 gi|321280211|gb|EFX57250.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9)
           [Streptococcus sp. C300]
          Length = 449

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 150/372 (40%), Positives = 234/372 (62%), Gaps = 6/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS +++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T E ++  ++    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLN 372
           E L +K++  L 
Sbjct: 355 ENLTKKRMKGLK 366


>gi|330719371|ref|ZP_08313971.1| superfamily II DNA/RNA helicase [Leuconostoc fallax KCTC 3537]
          Length = 551

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 152/371 (40%), Positives = 233/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS +++ ++ + GYV+ TPIQ KTIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFNELGLSQELLQSIAEHGYVEATPIQEKTIPLTLVGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    LI+ PTRELA Q AD  +K G++ ++ V ++ GG     Q + L+
Sbjct: 61  EHIDLNNKNIQ---ALIVSPTRELAIQTADELKKLGRDKHVDVQVVFGGADIRRQIQNLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LDH NR  + ++++  LV+DEAD ML+MGF+  I+ I    P TRQT
Sbjct: 118 SHPQILVGTPGRLLDHTNRKTVKLDHVNTLVLDEADEMLNMGFLDDIEAIIEKTPATRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F+ NP+ I++     T + ++  FV    + ++K   + ++  
Sbjct: 178 LLFSATMPPAIKLIGVKFMTNPEHIQIEAKELTTDLVDQYFV--RVRENEKFDTMTRIFD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   K  I+F   K+ V  L   LE +G+    +HG++ Q+ R ++L+ FK   I ++V
Sbjct: 236 VQ-APKLAIVFGRTKRRVEELARGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HV+NFD+P   E+Y+HRIGRTGRAG  G + T VA  ++ ++ A+
Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAEGVSVTFVAPNEMDYLRAV 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMTPL 365


>gi|227432573|ref|ZP_03914553.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227351656|gb|EEJ41902.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 536

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 151/371 (40%), Positives = 232/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++LGLS  ++ A+   GYV+ TPIQ KTIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 13  LKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGRDVIGQAQTGTGKTAAFGLPIL 72

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    LI+ PTRELA Q A+  +K G++  + V ++ GG     Q + L+
Sbjct: 73  EHIDLNNKNIQ---ALIVSPTRELAIQTAEELKKLGRDKRVDVQVVFGGADIRRQIQNLK 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LDH NR  + ++++  LV+DEAD ML+MGF+  I+ I S  P  RQT
Sbjct: 130 SHPQILVGTPGRLLDHINRKTVKIDSVRTLVLDEADEMLNMGFLDDIEAIISKTPAERQT 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+ NP+ I++     T + ++  FV    + ++K   + ++  
Sbjct: 190 LLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFV--RMRENEKFDTMTRIFD 247

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   K  I+F   K+ V  L   LE +G+    +HG++ Q+ R ++L+ FK   I ++V
Sbjct: 248 VQ-APKLAIVFGRTKRRVEELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HV+NFD+P   E+Y+HRIGRTGRAG  G + T VA  ++ ++ A+
Sbjct: 307 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTFVAPNEMDYLRAV 366

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 367 EDLTKKRMTPL 377


>gi|119470813|ref|ZP_01613424.1| ATP-dependent RNA helicase, cold shock protein A [Alteromonadales
           bacterium TW-7]
 gi|119446040|gb|EAW27319.1| ATP-dependent RNA helicase, cold shock protein A [Alteromonadales
           bacterium TW-7]
          Length = 600

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 147/348 (42%), Positives = 222/348 (63%), Gaps = 8/348 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LSP ++ AV + GY  P+ IQ + IPL+L+R DV G+AQTGTGKTA+F LP+L  
Sbjct: 7   FESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLLNN 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++     V+ P+ L+L PTRELA QVA+ FE+Y K    + V  L GG  +  Q   L R
Sbjct: 67  IDPS---VKQPQILVLTPTRELAIQVAEAFEQYAKGTRGVEVLALYGGQSYSIQLSALRR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH NRG +  + ++ LV+DEAD ML MGFI  ++NI    P  +QT 
Sbjct: 124 GAQIIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVENIMEKTPREKQTC 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  ++Q +S  ++ NP+++ ++  +ST  ++E  F    A   K  A+++ L   
Sbjct: 184 LFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVF--WNASVHKNKAIVRFLEAE 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   +  I+F   + + V L   LE++GFS   ++G+++Q++R + +   K G + +++A
Sbjct: 242 Q--YEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNVVIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +D+AARGLD+  +  V N+D+P  +E Y+HRIGRTGRAGR GKA   V
Sbjct: 300 TDVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFV 347


>gi|90412948|ref|ZP_01220947.1| putative ATP-dependent RNA helicase, DEAD box family protein
           [Photobacterium profundum 3TCK]
 gi|90326127|gb|EAS42561.1| putative ATP-dependent RNA helicase, DEAD box family protein
           [Photobacterium profundum 3TCK]
          Length = 422

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 165/384 (42%), Positives = 237/384 (61%), Gaps = 14/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+ ++V  V + G+  PTPIQ + IP VL   D+   AQTGTGKTA+F LPM+
Sbjct: 1   MSFQALGLNTQLVDTVTELGFKTPTPIQEQAIPQVLAGDDIMAGAQTGTGKTAAFGLPMI 60

Query: 61  TIL------EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
             L      E     ++ P   R L+L PTRELA QV D+   Y KN ++ VA+  GG  
Sbjct: 61  QRLLASQQSEHDEGYIKKPEAIRALVLTPTRELAQQVHDSILAYSKNTSIKVAVAYGGTS 120

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q K L+ G D+LI TPGR+LDH   G + ++ IE LV+DEADRMLDMGF+  I+ I 
Sbjct: 121 MGVQVKALKSGVDILIATPGRLLDHAFTGTVDLSKIECLVLDEADRMLDMGFVVDIKRIM 180

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
             +P  RQTLLFSAT +++++K++ + L +PK IEV   +  AE++            +K
Sbjct: 181 QRMPRKRQTLLFSATFSNQVKKLAYDILADPKLIEVTPENIAAESVTQMVYPV--DKHRK 238

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL  L+ S++     +IF   K+    L   L   G    +I+G+  Q +R + LS+F
Sbjct: 239 RELLSYLIGSRN-WNQVLIFTKTKQGSDELAKELILDGIKAVSINGDKSQGARQRALSDF 297

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           KEG ++ MVA+D+AARGLDI  +G+V NFD+P +AE+Y+HRIGRTGRAG  G A +L++ 
Sbjct: 298 KEGKVRAMVATDVAARGLDIEQLGYVVNFDLPFQAEDYVHRIGRTGRAGLTGSAISLMSI 357

Query: 352 EDIKHIDAIEKLIEKKV--DWLNG 373
           ++   + AIE+L++ ++  +WL G
Sbjct: 358 DEEWALRAIEELLDTRLPQEWLEG 381


>gi|118586395|ref|ZP_01543844.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163]
 gi|118433182|gb|EAV39899.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163]
          Length = 509

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 156/383 (40%), Positives = 237/383 (61%), Gaps = 14/383 (3%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM 72
           + AV   GY + TPIQ KTIPL++Q  DV G AQTGTGKTA+F LP+L  ++    +++ 
Sbjct: 1   MSAVKKHGYDEATPIQEKTIPLIIQGVDVIGQAQTGTGKTAAFGLPILEEVDPKNPQIQ- 59

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
              L++ PTRELA Q  +   K G + ++   ++ GG     Q   L+    +L+ TPGR
Sbjct: 60  --ALVISPTRELAMQTEEELNKLGSDKHVKTQVIFGGYDIRRQIHALKEHPQILVGTPGR 117

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           ++DH NR  +    ++ LVIDEAD ML+MGF+  I+ I    P  RQTLLFSATM D+++
Sbjct: 118 LIDHLNRHTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPDDRQTLLFSATMPDDIK 177

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           K+   F+++P+ + + +   T + ++   V T  +Y K  A+ +     Q  +   I+F 
Sbjct: 178 KIGVKFMEDPEEVHIASKGLTIDLVDQYLVNTR-EYEKFDAMTRLFDVEQPEL--AIVFG 234

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             K+ V  L  +L+ +G+    IHG++DQ +RM+ L +FK+G +Q +VA+D+AARGLDI 
Sbjct: 235 RTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVATDVAARGLDIS 294

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
            V HV+N+DVP   E+Y+HRIGRTGRAG HG + T V + +I ++ AIEKLI K+     
Sbjct: 295 GVTHVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVVRGEIDYLRAIEKLINKR----- 349

Query: 373 GDLSSLNPP-LEKIDIAQHNHAR 394
             +++L PP  E+  IA+  +A+
Sbjct: 350 --MAALKPPSAEEAHIARLKNAK 370


>gi|42521860|ref|NP_967240.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39574390|emb|CAE77894.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 505

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 155/368 (42%), Positives = 226/368 (61%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L   +  ++ +AGY  PTPIQ+  IP++L+ HD+ GIAQTGTGKTA+F LP+L  
Sbjct: 6   FTDLPLIAPLQFSLKEAGYETPTPIQLAAIPVILEGHDLLGIAQTGTGKTAAFSLPILQN 65

Query: 63  LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L K   ++  + PR LIL PTRELA Q+ +N E Y K+ N+  A++ GG+    Q + L+
Sbjct: 66  LSKHTRKIEPKSPRCLILTPTRELAIQIHENIEAYSKHLNMKHAVIFGGVGQNPQVRALQ 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+LI TPGR++D   +  L ++ +EI V+DEADRMLDMGF+  I+ I  L+P  R  
Sbjct: 126 GGVDILIATPGRLMDLHGQKHLKLDRVEIFVLDEADRMLDMGFMQDIKKILPLLPQKRHN 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+Q ++   L NPK++EV   SSTAE +E   +  +    +K  LL  +L+
Sbjct: 186 LFFSATMPHEIQTLANRILVNPKKVEVTPVSSTAEKVEQRVM--FVDKPQKLDLLLHILK 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +++   ++F   K     +   L K G +   IHG+  Q  R + L  FK G ++++V
Sbjct: 244 D-ESLSKVLVFVQMKYGANRVVDRLTKAGVAAAGIHGDKSQNQRQRALEEFKNGDVRVLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + HV N ++P+  E+Y+HRIGRT RAG  G + +    E+   + AI
Sbjct: 303 ATDIAARGIDIDGITHVINLELPHIPESYVHRIGRTARAGATGISISFCTAEERSFLFAI 362

Query: 361 EKLIEKKV 368
           EK    KV
Sbjct: 363 EKTTRTKV 370


>gi|253996647|ref|YP_003048711.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera
           mobilis JLW8]
 gi|253983326|gb|ACT48184.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8]
          Length = 576

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 150/372 (40%), Positives = 231/372 (62%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L+P ++ A+ + GY  PTPIQ + IP+V++ HD+   AQTGTGKTA F+LP L
Sbjct: 1   MSFESLNLNPAILRAIEETGYTTPTPIQAQAIPVVMEGHDLMASAQTGTGKTAGFMLPAL 60

Query: 61  TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L     +R R PR L+L PTRELAAQV +   KYGK        ++GG+P+  QNK L
Sbjct: 61  NLLATPHESRSRGPRILVLTPTRELAAQVNEAARKYGKFLRARTVSIVGGMPYPLQNKLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+L+ TPGR+LDH  RG++ ++ +++L++DEADRMLDMGF+P ++ I   +   RQ
Sbjct: 121 SQPLDILVATPGRLLDHMERGRIDLSRLQMLILDEADRMLDMGFLPDVERICEQLSAERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQ 237
           TLLFSAT+  ++ ++++  L+NPK ++V         IE    FV      +K   LL+ 
Sbjct: 181 TLLFSATLDGDIARIAQQILKNPKTVQVAAQKEKHANIEQRLHFVDDMTHKNK---LLEH 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL + +  +  IIF + K++   L   L   G    A+HG++ Q +R + L+  + G ++
Sbjct: 238 LLIAPEVNQT-IIFTSTKRHADVLAEDLYAAGHKTAALHGDMTQGARNRTLTKLRHGDVK 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+  + HV N+D+P  AE+Y+HRIGRTGRA   G A +  +  D   +
Sbjct: 297 VLVATDVAARGIDVHGITHVINYDLPKFAEDYVHRIGRTGRANNTGIAISFASNMDRHLL 356

Query: 358 DAIEKLIEKKVD 369
             IE+    +++
Sbjct: 357 RKIEQYTGNRLE 368


>gi|307706894|ref|ZP_07643696.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
 gi|307617767|gb|EFN96932.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
          Length = 524

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 150/371 (40%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP +RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPESRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|84684138|ref|ZP_01012040.1| hypothetical protein 1099457000262_RB2654_16856 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667891|gb|EAQ14359.1| hypothetical protein RB2654_16856 [Rhodobacterales bacterium
           HTCC2654]
          Length = 439

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 161/384 (41%), Positives = 234/384 (60%), Gaps = 9/384 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL PK++ AV  AGY  P+PIQ++ IP  L   DV G+AQTGTGKTA+F LP++  
Sbjct: 4   FNDLGLDPKLLAAVKAAGYQTPSPIQVQAIPHALAGTDVLGLAQTGTGKTAAFGLPLVQQ 63

Query: 63  LEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  G  + R P   R L+L PTREL  Q+ADN   Y K  ++ V  ++GG     Q + L
Sbjct: 64  LLGGHDK-REPKGVRALVLAPTRELVNQIADNLIAYVKGTHIKVNTVVGGKSINKQVQIL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR++D  +R  + ++    LV+DEAD+MLDMGFI  ++ I   +   RQ
Sbjct: 123 AKGTDILVATPGRLIDLMDRKAVRLDTATFLVLDEADQMLDMGFIHALRRIAPELGTPRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQQL 238
           T+LFSATM  +++++S  +L +P +++V  P   A+ I       +AQ    K  +L+  
Sbjct: 183 TMLFSATMPKQMEELSRAYLTDPVKVQVAAPGKAADKITQGV--HWAQDKGDKIDILKAY 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S +     ++F   K     L   L   GF   +IHGN  Q  R + L+ F++G  ++
Sbjct: 241 L-SDEPDGLSLVFARTKHGAERLMKQLCASGFDAVSIHGNKSQGQRDRALAAFRDGKARV 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DIP V HVFNFD+PN AENY+HRIGRT RAG  G A +LV  +++ ++ 
Sbjct: 300 LVATDVAARGIDIPGVSHVFNFDLPNVAENYVHRIGRTARAGADGDAISLVTGDELGYLR 359

Query: 359 AIEKLIEKKVDWLNGDL-SSLNPP 381
            I+KL++  +  L G+    L PP
Sbjct: 360 DIQKLMKIDIPVLGGNRPEELAPP 383


>gi|223937377|ref|ZP_03629282.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
 gi|223893928|gb|EEF60384.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
          Length = 437

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 154/370 (41%), Positives = 222/370 (60%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   ++ AV +AGY +PTPIQ   IP ++  HD+ GIAQTGTGKTA+FVLP+L
Sbjct: 1   MSFRTLGLDANILKAVQEAGYTEPTPIQAAAIPQIIAGHDLIGIAQTGTGKTAAFVLPIL 60

Query: 61  TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L   K  A  R  R L++ PTREL  Q+ +N   Y K+  L VA + GG+    Q + 
Sbjct: 61  AKLAGMKREANQRGIRALVVAPTRELVVQIEENVRAYSKHLPLKVATVFGGVGEHPQIQA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D++I TPGR+LD  +R     + I  LV+DEADRMLDMGF+P I+ I   +P  R
Sbjct: 121 LRSGVDMVIATPGRLLDLMDRRHGDFSGINFLVLDEADRMLDMGFLPSIRQIVKALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT++ E++ ++  F   PK +++   S+ AET+             K ALL  L
Sbjct: 181 QTLLFSATLSREIEGLTHEFQHAPKTVQIGRRSNPAETVTQLVYEVPKHL--KPALLVHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+   +M   ++F   K +   +  +LE +G     +H N  Q  R++ L +FK G +++
Sbjct: 239 LRD-PSMDMVLVFSRMKHSADRIARNLENKGIKTATLHSNRSQNQRLRALKDFKSGAVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + HV N+D P  AE+Y+HRIGRTGRA   G A + V  ED   + 
Sbjct: 298 LVATDIAARGIDVDGISHVVNYDFPMHAEDYVHRIGRTGRAHAVGDAISFVTSEDHGTLR 357

Query: 359 AIEKLIEKKV 368
           ++E+ I + +
Sbjct: 358 SLERFIGRGI 367


>gi|330808371|ref|YP_004352833.1| cold-shock dead-box protein A [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376479|gb|AEA67829.1| cold-shock dead-box protein A [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 557

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 147/367 (40%), Positives = 233/367 (63%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA   L+P ++ AV   GY +P+ IQ ++IP+++  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAAFNLNPNILAAVTATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAFALPILHR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPAK---REPQALILAPTRELALQVATAFETYSKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKALPATRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++P+ +++ T + T   IE   +  +A   +K + +  LL+ 
Sbjct: 185 LFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 243 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKV 368
           ++  +KV
Sbjct: 362 RVTGQKV 368


>gi|104780746|ref|YP_607244.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95109733|emb|CAK14434.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           entomophila L48]
          Length = 562

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 146/367 (39%), Positives = 234/367 (63%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L+P +V AVL  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAALELNPNIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ LIL PTRELA QVA  FE Y K    + V  + GG P   Q + +  
Sbjct: 68  IDVSK---REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + +++ ++ LV+DEAD ML +GF+  ++ I   +P +RQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPASRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L+ PK +++ + + T   I+   +  +A   +K   + +LL+ 
Sbjct: 185 LFSATLPSSIRSIAERHLREPKHVKIQSKTQTVTAIDQAHLMVHA--DQKIPAVLRLLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++     I F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 243 EE-FDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKV 368
           ++  +KV
Sbjct: 362 RVTGQKV 368


>gi|315612763|ref|ZP_07887674.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis ATCC 49296]
 gi|315314873|gb|EFU62914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis ATCC 49296]
          Length = 525

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 150/371 (40%), Positives = 233/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS +++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T E ++  ++    Q  +K   +  L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTHLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|121599633|ref|YP_993994.1| putative ATP-dependent RNA helicase rhlE [Burkholderia mallei
           SAVP1]
 gi|121228443|gb|ABM50961.1| putative ATP-dependent RNA helicase rhlE [Burkholderia mallei
           SAVP1]
          Length = 473

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 157/358 (43%), Positives = 227/358 (63%), Gaps = 7/358 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE----KGRARV 70
           AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+L  L     + R+  
Sbjct: 3   AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENRSAR 62

Query: 71  RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130
           R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q   L+RG D+++ TP
Sbjct: 63  RAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVATP 122

Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190
           GR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P  RQ LLFSAT +DE
Sbjct: 123 GRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFSDE 182

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGII 250
           ++ ++++ L +P  IEV   ++TAETI            +K  LL  L++  +  +  ++
Sbjct: 183 IKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLTHLIREHNWFQV-LV 239

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F   K     L   L K G S  AIHGN  Q +R + LS FK  T+Q++VA+D+AARG+D
Sbjct: 240 FTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGID 299

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           I  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + +  IE+LI++++
Sbjct: 300 IDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREI 357


>gi|322377346|ref|ZP_08051837.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M334]
 gi|321281546|gb|EFX58555.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M334]
          Length = 524

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 150/372 (40%), Positives = 234/372 (62%), Gaps = 6/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNELNLSADLLAEIERAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP +RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPESRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWLN 372
           E L +K++  L 
Sbjct: 355 ENLTKKRMKGLK 366


>gi|313202811|ref|YP_004041468.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312442127|gb|ADQ78483.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 451

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 157/371 (42%), Positives = 231/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L   ++ A+   GY +PTPIQ  +IP+VL+ HD+ G AQTGTGKTA+F +P+L
Sbjct: 1   MTFDKLDLIEPILNALSHEGYTQPTPIQEISIPIVLKGHDLLGCAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L+  +   R PR    LI+ PTRELA Q+ ++F  YG+  NL   ++ GG+P  AQ  
Sbjct: 61  QLLQLNKGAERAPRKIKALIVTPTRELAIQIGESFAAYGRFMNLRHTVIFGGVPQGAQVG 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G D+LI TPGR+LD   +G + +N + I V+DEADRMLDMGFI  ++ +  ++P  
Sbjct: 121 ALKMGVDILIATPGRLLDLQTQGYVKLNELSIFVLDEADRMLDMGFIHDVKKLIKIIPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+L FSATM + ++ ++ + L NP+ + V   S+TAETI+      +     K  LL  
Sbjct: 181 RQSLFFSATMPESIRVLAGSILTNPEEVAVTPVSTTAETIQQEMY--FVDAVNKKDLLIH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ + ++K  ++F   K     +   L K      AIHGN  Q +R   L NFK+ T +
Sbjct: 239 LLQDK-SIKTALVFTRTKHGADKVQRLLTKARIKAEAIHGNKSQNARQNALRNFKDRTTR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI D+  V N+++PN  E Y+HRIGRTGRAG  GKA +    E+ +++
Sbjct: 298 VLVATDIAARGIDIDDLNLVINYEIPNIPETYVHRIGRTGRAGLDGKAVSFCDAEEHEYL 357

Query: 358 DAIEKLIEKKV 368
             I+KLI  ++
Sbjct: 358 RDIQKLISIQI 368


>gi|270293148|ref|ZP_06199359.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M143]
 gi|270279127|gb|EFA24973.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M143]
          Length = 520

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 150/371 (40%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS +++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T E ++  ++    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|330897234|gb|EGH28653.1| helicase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 557

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 147/367 (40%), Positives = 233/367 (63%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA   L P ++ AV+  GY +P+ IQ ++IP+++  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAAFELHPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAFALPILHR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPSK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P T+QT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETKQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++PK +++ T + T   IE   +  +A   +K + +  LL+ 
Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 243 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKV 368
           ++  +KV
Sbjct: 362 RVTGQKV 368


>gi|24379088|ref|NP_721043.1| ATP-dependent RNA helicase [Streptococcus mutans UA159]
 gi|24376988|gb|AAN58349.1|AE014905_2 putative ATP-dependent RNA helicase, DEAD-box family [Streptococcus
           mutans UA159]
          Length = 517

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 148/371 (39%), Positives = 236/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  ++ AV   G+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  NKIDVTNNVVQ---ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N++E L++DEAD ML+MGF+  I+ I S VP TRQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T + ++  ++    + ++K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTDLVDQYYI--RVKENEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +G+    IHG++DQ  R+++L +FK   + ++V
Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+HG++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           EKL +K++  +
Sbjct: 355 EKLTKKRMKGM 365


>gi|304392205|ref|ZP_07374147.1| ATP-dependent RNA helicase RhlE [Ahrensia sp. R2A130]
 gi|303296434|gb|EFL90792.1| ATP-dependent RNA helicase RhlE [Ahrensia sp. R2A130]
          Length = 536

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 164/380 (43%), Positives = 234/380 (61%), Gaps = 8/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+ LGLS +VV  +   G   PTPIQ   IPLVL+  DV G+AQTGTGKTA+F LP++  
Sbjct: 36  FSALGLSKRVVRPLAVLGLKDPTPIQTNAIPLVLEGRDVMGLAQTGTGKTAAFGLPLIDR 95

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L  G + + R  R LIL PTREL  Q+ADN   Y K   + V+ ++GG     Q + L 
Sbjct: 96  LLSDGDKVQPRSVRALILAPTRELVNQIADNLRAYVKKTPVWVSSVVGGQNINTQIRHLA 155

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVL+ TPGR+LD  +R  + ++  + LV+DEAD+MLDMGFI  ++ I  L+   RQT
Sbjct: 156 KGTDVLVATPGRLLDLVDRKAVKLDTAKYLVLDEADQMLDMGFIHALRRIEPLLGRPRQT 215

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++S+++L NP+RIEV      A+ +       Y     K  LL +LL 
Sbjct: 216 LLFSATMPKLVEELSKSYLTNPERIEVARAGKAADKVRQSV--HYIATKDKLNLLSKLLA 273

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + D +   ++F   K     L   L  QGF+  +IHGN  Q  R + L  FK G ++++
Sbjct: 274 ERPDDLS--LVFGRTKHGCEKLMKQLVAQGFAAASIHGNKSQGQRDRALREFKSGAVRIL 331

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V HV+NF++P   ENY+HRIGRT RAGR G+A    A ++ K +  
Sbjct: 332 VATDVAARGIDIPAVSHVYNFNLPEVPENYVHRIGRTARAGRDGEAVAFCAPDERKMLRD 391

Query: 360 IEKLIEKKVDWLNGDLSSLN 379
           I++L+   ++ + GD  S+N
Sbjct: 392 IQRLMNFDIEVV-GDDGSMN 410


>gi|238793027|ref|ZP_04636656.1| DEAD/DEAH box helicase domain protein [Yersinia intermedia ATCC
           29909]
 gi|238727627|gb|EEQ19152.1| DEAD/DEAH box helicase domain protein [Yersinia intermedia ATCC
           29909]
          Length = 667

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 147/364 (40%), Positives = 233/364 (64%), Gaps = 6/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  ++ A+ D GY KP+PIQ++ IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 9   FADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHN 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           +   +A ++ P+ L+L PTRELA QVA     + K+ N + V  L GG  ++ Q + L +
Sbjct: 69  I---KAELKSPQVLVLAPTRELAIQVAQALSDFSKHINGVNVVALYGGQRYDVQLRALRQ 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + +P   QT 
Sbjct: 126 GPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPAEHQTA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++  F+++P+ + + +  +T   I   F      Y K  AL+ + L+S
Sbjct: 186 LFSATMPDAIRRITRRFMKDPQEVRIQSSVTTRPDISQSFWRVGGGYRKNEALV-RFLES 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE  G++  A++G+++Q  R + L+  K+G + +++A
Sbjct: 245 ED-FDAAIIFVRTKNGTLEVAEALESSGYNCAALNGDMNQSLREQTLNRLKDGRLDILIA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  IE
Sbjct: 304 TDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNIE 363

Query: 362 KLIE 365
           + ++
Sbjct: 364 RTMK 367


>gi|322387454|ref|ZP_08061064.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC
           700779]
 gi|321141983|gb|EFX37478.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC
           700779]
          Length = 524

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 151/371 (40%), Positives = 233/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  ++  V  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFNLSADLLAEVEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +++IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|91775610|ref|YP_545366.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|91709597|gb|ABE49525.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
          Length = 460

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 157/373 (42%), Positives = 241/373 (64%), Gaps = 9/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA L L+P+++ A+ ++GY  PTPIQ + IP+VL+  D+   AQTGTGKTA+F LP+L
Sbjct: 14  ISFASLNLAPELLKALDESGYTTPTPIQAQAIPVVLEGSDLMAGAQTGTGKTAAFTLPLL 73

Query: 61  TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L    +    P     R LIL PTRELA QV ++ + Y K+  L   ++ GG+  ++Q
Sbjct: 74  QKLLPLASSSASPARHPVRALILTPTRELAIQVEESVKTYAKHTPLRSLVVFGGVDIKSQ 133

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L +G ++L+ TPGR+LDH  +  + +  +++LV+DEADRMLDMGF+P ++ I +L+P
Sbjct: 134 TPTLMKGVEILVATPGRLLDHVEQRTVQLGQVQMLVLDEADRMLDMGFMPDLKRILALLP 193

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ L+FSAT + E++K+SE FL  P  IEV   ++T+E +    +   +++  K  +L
Sbjct: 194 KQRQNLMFSATFSPEIKKLSEEFLTKPVLIEVARSNATSENVTQKILLVESEH--KQHVL 251

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL+ + T    I+F   K +   L   LE++G +  AIHG+  Q  R++ L  FK+G 
Sbjct: 252 ADLLRKEAT--QVIVFTKTKLSASRLARHLEREGIAAGAIHGDKSQLERIQALDAFKQGK 309

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I  +VA+D+AARGLDI  +  V N+++P+ AE+Y+HRIGRTGRAG  G A +LV+ E+ K
Sbjct: 310 ITALVATDVAARGLDIDQLPMVVNYELPSAAEDYVHRIGRTGRAGASGIAISLVSSEEEK 369

Query: 356 HIDAIEKLIEKKV 368
            +  IEKLI++++
Sbjct: 370 FLKEIEKLIKREL 382


>gi|259500990|ref|ZP_05743892.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners DSM 13335]
 gi|302190561|ref|ZP_07266815.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus iners AB-1]
 gi|309803755|ref|ZP_07697841.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 11V1-d]
 gi|309804668|ref|ZP_07698733.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 09V1-c]
 gi|309806978|ref|ZP_07700960.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 03V1-b]
 gi|309808565|ref|ZP_07702461.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 01V1-a]
 gi|309809614|ref|ZP_07703471.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           2503V10-D]
 gi|312871555|ref|ZP_07731648.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           3008A-a]
 gi|312872588|ref|ZP_07732656.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2062A-h1]
 gi|312874281|ref|ZP_07734313.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2052A-d]
 gi|312874733|ref|ZP_07734752.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2053A-b]
 gi|315653950|ref|ZP_07906866.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners ATCC 55195]
 gi|325912398|ref|ZP_08174793.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           143-D]
 gi|325913097|ref|ZP_08175467.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           60-B]
 gi|329920540|ref|ZP_08277272.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           1401G]
 gi|259167684|gb|EEW52179.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners DSM 13335]
 gi|308164164|gb|EFO66425.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 11V1-d]
 gi|308166060|gb|EFO68278.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 09V1-c]
 gi|308166598|gb|EFO68795.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 03V1-b]
 gi|308168193|gb|EFO70315.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 01V1-a]
 gi|308170095|gb|EFO72131.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           2503V10-D]
 gi|311089478|gb|EFQ47903.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2053A-b]
 gi|311090154|gb|EFQ48566.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2052A-d]
 gi|311091950|gb|EFQ50326.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092950|gb|EFQ51301.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           3008A-a]
 gi|315488646|gb|EFU78292.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners ATCC 55195]
 gi|325475740|gb|EGC78911.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           143-D]
 gi|325477518|gb|EGC80660.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           60-B]
 gi|328936216|gb|EGG32669.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           1401G]
          Length = 487

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 153/384 (39%), Positives = 242/384 (63%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L P+++ A+  AG+ + TPIQ KTIPLVL   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELNLKPELLKAIKRAGFEEATPIQEKTIPLVLSGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+K +  ++    LI+EPTRELA Q  +   + G++ N  V ++ GG     Q + L+
Sbjct: 61  QTLDKKQEGIQ---ALIIEPTRELAIQTQEELFRLGRDENAHVQVVYGGADIRRQIRSLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  ++L+ TPGR+LDH  R  + +++++ +++DEAD MLDMGFI  I++I +      QT
Sbjct: 118 QVPNILVGTPGRLLDHLKRRTINLSHLKHVILDEADEMLDMGFIQDIESILTFASNDHQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + ++ E F+ +P+ +++ +   TA  I+  FV    + ++K  +L +L+ 
Sbjct: 178 LLFSATMPKPILQIGEKFMHDPQIVQIKSKELTANLIDQYFV--RLKENEKFDILCRLID 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD  +  ++F   K+ V  L    + +G+    IHG++ Q  RM +L  FK+G + ++V
Sbjct: 236 VQDP-ELSVVFGRTKRRVDELTRGFQARGYDAAGIHGDLTQTKRMSVLKRFKQGKLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  I
Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGKNGMSITFVTPNEIGYMKTI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E+L  KK       ++ L PP +K
Sbjct: 355 ERLTRKK-------MTPLRPPSDK 371


>gi|329956784|ref|ZP_08297353.1| ATP-dependent RNA helicase RhlE [Bacteroides clarus YIT 12056]
 gi|328523823|gb|EGF50910.1| ATP-dependent RNA helicase RhlE [Bacteroides clarus YIT 12056]
          Length = 372

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 151/368 (41%), Positives = 227/368 (61%), Gaps = 3/368 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL ++  ++ A+ + GY  PTPIQ+K IP  L   D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFKDLNITEPILKAIEEKGYTSPTPIQVKAIPAALTGKDILGCAQTGTGKTAAFAIPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+ G+ R +  + LIL PTRELA Q+++  + Y K   +   ++ GG+   AQ   L 
Sbjct: 61  QHLQAGKERDKSIKALILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRAQVNMLH 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+LD  N+G + ++++   V+DEADRMLDMGFI  I+ +   +P  +QT
Sbjct: 121 KGVDILVATPGRLLDLMNQGYIRLDSVRHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM D +  ++ + L+ P +I +   SST +TIE      + +  +K  LL  +L 
Sbjct: 181 LFFSATMPDTIIALTNSLLKQPVKIAITPKSSTVDTIEQTVY--FVEKKEKSKLLISILH 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  ++ ++F   K N   +   L K G    AIHGN  Q +R   L NFK G I++M+
Sbjct: 239 KAEG-QSVLVFSRTKHNADRIVRVLSKAGIGSQAIHGNKSQNARQSALENFKTGKIRVMI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A T  ++E+ K +  I
Sbjct: 298 ATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNSGTALTFCSQEERKLVSDI 357

Query: 361 EKLIEKKV 368
           +KL  KK+
Sbjct: 358 QKLTGKKL 365


>gi|237707985|ref|ZP_04538466.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 9_1_42FAA]
 gi|229457971|gb|EEO63692.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 9_1_42FAA]
          Length = 434

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 168/428 (39%), Positives = 256/428 (59%), Gaps = 17/428 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY  PTPIQ + IP++L+  D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   + +  + LIL PTRELA Q+ +NF++Y K   +  A++ GG+P +AQ   L+
Sbjct: 61  QRLYQSDYK-KGIKALILTPTRELAIQIGENFDQYAKYTGVKHAVIFGGVPQKAQVDALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  VLI TPGR+LD  ++G + +  +E  V+DEADRMLDMGFI  I+ +  L+P  RQT
Sbjct: 120 RGVQVLIATPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++++ L NPK++EV   SST +TI+    + Y    K+   L   L 
Sbjct: 180 LFFSATMPSEIEKLADSMLTNPKKVEVTPVSSTVDTIQQ---SVYFVEKKEKKDLLLHLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +++ +IF   K     L   L K      AIHGN  Q +R + L+NFK+ T ++++
Sbjct: 237 KNPEIESVLIFTRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+++PN +E Y+HRIGRTGRAG  G A +    E++ ++  I
Sbjct: 297 ATDIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDI 356

Query: 361 EKLIEKKV------DWLN--GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG-FDRRKK 411
           +KLI  ++       W+   G  +      E  + A+ N A + +    KS G + RRKK
Sbjct: 357 QKLIGLQIPVVKDHPWVTVEGVKAQAGKTEELKEKAKANKAYRGS----KSNGDYWRRKK 412

Query: 412 NYSSQKSH 419
              S++  
Sbjct: 413 QVQSRQGQ 420


>gi|170720663|ref|YP_001748351.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida W619]
 gi|169758666|gb|ACA71982.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 559

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 146/367 (39%), Positives = 234/367 (63%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L+P +V AVL  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAALDLNPNIVAAVLATGYEEPSAIQHQSIPIILAGHDMIGQAQTGTGKTAAFALPILNK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ LIL PTRELA QVA  FE Y K    + V  + GG P   Q + +  
Sbjct: 68  IDVSK---REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + +++ ++ LV+DEAD ML +GF+  ++ I   +P +RQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPASRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L+ PK +++ + + T   I+   +  +A   +K   + +LL+ 
Sbjct: 185 LFSATLPSSIRSIAERHLREPKHVKIQSKTQTVTAIDQAHLMVHA--DQKIPAVLRLLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++     I F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 243 EE-FDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKV 368
           ++  +KV
Sbjct: 362 RVTGQKV 368


>gi|300173740|ref|YP_003772906.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
           [Leuconostoc gasicomitatum LMG 18811]
 gi|299888119|emb|CBL92087.1| ATP-dependent RNA helicase/Autoaggregation-mediating protein
           [Leuconostoc gasicomitatum LMG 18811]
          Length = 538

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 150/371 (40%), Positives = 233/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+   GYV+ TPIQ KTIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    LI+ PTRELA Q A+  +K G++ ++ V ++ GG     Q + L+
Sbjct: 61  EHIDLDNKNIQ---ALIVSPTRELAIQTAEELKKLGRDKHVDVQVVFGGADIRRQIQNLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LDH NR  + + +++ LV+DEAD ML+MGF+  I++I    P  RQT
Sbjct: 118 SHPQILVGTPGRLLDHINRKTVKIEHVKTLVLDEADEMLNMGFLEDIESIIKNTPAERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+ NP+ I++     T + ++  FV    + ++K   + ++  
Sbjct: 178 LLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFV--RMRENEKFDTMTRIFD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   K  I+F   K+ V  L   LE +G+    +HG++ Q+ R ++L+ FK   I ++V
Sbjct: 236 VQ-APKLAIVFGRTKRRVEELARGLEARGYHASGLHGDLTQQMRSRVLAQFKSHEINILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HV+NFD+P   E+Y+HRIGRTGRAG  G + T V+  ++ ++ A+
Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTFVSPNEMDYLRAV 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 EDLTKKRMTAL 365


>gi|325003093|ref|ZP_08124205.1| DEAD/DEAH box helicase domain protein [Pseudonocardia sp. P1]
          Length = 471

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 157/372 (42%), Positives = 218/372 (58%), Gaps = 9/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+P ++ A+   GY  P+PIQ   I  ++   D+ G A TGTGKTA+F LPML  
Sbjct: 36  FADLGLAPTLLAALDGLGYETPSPIQAAAIGPLIAGRDLLGQAATGTGKTAAFALPMLQR 95

Query: 63  LEKGR-ARVRMPRT--LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  GR +R R P+   ++L PTRELA QV +   KYG      VA + GG P   Q  +L
Sbjct: 96  LADGRVSRDRGPKPFGIVLAPTRELAMQVGEAVTKYGAELGARVACVFGGAPIGPQLGQL 155

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DV++ TPGR +D  NRG L ++ IE+ V+DEAD MLDMGF+  I+ I    P  RQ
Sbjct: 156 RRGVDVVVATPGRAIDLINRGALSLDAIEVAVLDEADEMLDMGFVEDIETILGSTPEGRQ 215

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVN---TPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T+LFSATM   +Q ++   L +P  I +    TP   A  +     A +   S     L 
Sbjct: 216 TVLFSATMPGRIQSLARTHLSDPADIRIKREATPEGEAPKVRQT--AYHVPRSHVTVALG 273

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L+ +      I+FC  + +V  +  +L  +G    A+HG +DQ  R +++   + G  
Sbjct: 274 RVLEMEQPTA-AIVFCRTRADVDAVTETLTARGLRAEALHGGMDQEHRTRVVERLRAGRT 332

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+D+AARGLDI  + HV N DVP+  E+Y+HRIGR GRAGR G A TLV    ++H
Sbjct: 333 ELLVATDVAARGLDIDSLTHVVNHDVPSSPESYVHRIGRVGRAGREGVAITLVTPGSVRH 392

Query: 357 IDAIEKLIEKKV 368
           +  IE+LI   V
Sbjct: 393 LRNIERLIGGSV 404


>gi|163751726|ref|ZP_02158944.1| ATP-dependent RNA helicase [Shewanella benthica KT99]
 gi|161328378|gb|EDP99537.1| ATP-dependent RNA helicase [Shewanella benthica KT99]
          Length = 453

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 162/403 (40%), Positives = 243/403 (60%), Gaps = 15/403 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ ++ + GY  PTPIQ + IPL L+  ++   AQTG+GKTA+FVLPML
Sbjct: 6   MSFSNLGLSDPILTSLAELGYSSPTPIQAEAIPLALKGKNLIAAAQTGSGKTATFVLPML 65

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +G   R +  R LIL PTRELA QV ++ E YGK  NL    + GG+ +E Q + L
Sbjct: 66  EMLARGETQRKKRVRALILTPTRELAVQVCNSIEAYGKYLNLKALAVYGGVDYEPQKQAL 125

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR+ D + +  +  + IE+LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 126 IEGIDIVVATPGRLRDLYTQRSIHFDEIEMLVLDEADRMLDMGFIEDITKIIDTLPVDRQ 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  + N  ++ V   S     I+   V       KK ALL  L+
Sbjct: 186 NLLFSATLSRQVRELAKETIPNAIQLSVTKKSEGKPNIDQWLVTV--DKDKKSALLSHLI 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++  +  +IF   K     L   LEK+G     IH    Q  R +IL++FK G IQ +
Sbjct: 244 K-ENRWQQALIFIETKHGAAKLVTQLEKRGIQAECIHSGRAQAIREQILADFKSGKIQFL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++ ++ARG+DI ++  V N+D+P  A+ Y+HRIGRT RAG  G+A +LV+K+D K++  
Sbjct: 303 ISTGISARGIDIDELPLVINYDLPYPADEYVHRIGRTARAGAAGEAISLVSKDDFKNLCM 362

Query: 360 IEK----LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           IEK    LIE+KV      ++   P  E + ++  N   KN P
Sbjct: 363 IEKRLDHLIERKV------VAGFEPRKE-VPVSVLNFVPKNKP 398


>gi|322391693|ref|ZP_08065161.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780]
 gi|321145504|gb|EFX40897.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780]
          Length = 523

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 151/371 (40%), Positives = 232/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  ++  V  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFNLSADLLAEVDKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + ++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQHVETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ PK +++     T E ++  ++    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPKHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|312129179|ref|YP_003996519.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311905725|gb|ADQ16166.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 373

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 154/372 (41%), Positives = 231/372 (62%), Gaps = 3/372 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +L LS  +  A+ + GY   TPIQ + IP VLQ  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MNFENLNLSAPLAQALQEYGYTSLTPIQEQAIPKVLQGQDLLGCAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + +     R  R LIL PTRELA Q+ DNF+ Y K+  ++ A++ GG+    Q  +L+
Sbjct: 61  ERILQNPKNKRQIRVLILTPTRELAIQIGDNFKAYSKHIKISHAVIFGGVNQNKQVNQLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G ++LI TPGR+LD  ++G + +N ++ LV+DEADRMLDMGF+  ++ I + +P  RQT
Sbjct: 121 QGVEILIATPGRLLDLMSQGFVRLNGLDTLVLDEADRMLDMGFVHDVKKILTKIPTERQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   ++K + + L NP  +EV   SSTAET++      +    +K  LL  +L+
Sbjct: 181 LFFSATMPQSIRKFAASILTNPAYVEVTPVSSTAETVKQGVY--FVDKKEKTPLLINILK 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q T +  +IF   K     L   L K G    AIHGN  Q +R + L +FK   + +++
Sbjct: 239 DQSTDRT-LIFTRTKHGADKLVKQLGKVGIPAAAIHGNKSQNARQRALEDFKSSRLNVLI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++ +V N+++PN  E Y+HRIGRTGRAG  G A +   +E++     I
Sbjct: 298 ATDIAARGIDIEELPYVINYELPNVPETYVHRIGRTGRAGAEGVAVSFCDQEELNDFKNI 357

Query: 361 EKLIEKKVDWLN 372
           +KL   +++ L+
Sbjct: 358 QKLTGIRIEVLS 369


>gi|212634102|ref|YP_002310627.1| DEAD box family ATP-dependent RNA helicase [Shewanella
           piezotolerans WP3]
 gi|212555586|gb|ACJ28040.1| ATP-dependent RNA helicase, DEAD box family [Shewanella
           piezotolerans WP3]
          Length = 422

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 162/387 (41%), Positives = 234/387 (60%), Gaps = 15/387 (3%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA--RVRMPRTLI 77
           GY +PTPIQ   IP++L   D+   AQTGTGKTA+F LP+L  L    A       R LI
Sbjct: 33  GYNEPTPIQTAAIPVILSGKDLMASAQTGTGKTAAFTLPILQKLAMQSAGKETDSIRALI 92

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           L PTRELA QV  +  +YG N  L   ++ GG+  +AQ   L  G D+++ TPGR+LDH 
Sbjct: 93  LVPTRELAVQVNKSVTEYGVNTALKSMVIYGGVSIDAQASSLAAGVDIVVATPGRLLDHL 152

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
            RG L +  I+ LV DEADRMLDMGF+  I  I   +P  RQTLLFSAT +D + ++S+ 
Sbjct: 153 RRGSLSLMAIDTLVFDEADRMLDMGFMDEINAILKQLPTERQTLLFSATFSDAIYRLSKK 212

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
            L  P RIEV+  +S A+++E    A      +K AL+  L+      +  +IF  +K+ 
Sbjct: 213 LLSKPVRIEVDKANSAADSVEQIVYAV--DSDRKAALISHLINKYH-WQQVLIFSRKKQT 269

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
              +   L   G +  A HG++ Q +R ++L++FK G I+ +VA+D+AARGLDI ++ +V
Sbjct: 270 ADTITSKLVAAGVAAKAFHGDLSQGAREQVLNDFKAGNIKALVATDVAARGLDIVELNYV 329

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV--DWLNGDL 375
            N+++P  AE+YIHRIGRTGRAG  GKA TL +++D + ++ +E L++K++   WL G  
Sbjct: 330 VNYEIPFVAEDYIHRIGRTGRAGNSGKAITLYSEDDARLLEELESLLDKRLPQQWLPG-- 387

Query: 376 SSLNPPLEKIDIAQHNHARKNNPIPQK 402
               P L K+++      RKN    Q+
Sbjct: 388 --FEPDLTKMEV----QPRKNGKAAQR 408


>gi|124515178|gb|EAY56689.1| putative ATP-dependent helicase [Leptospirillum rubarum]
          Length = 444

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 151/369 (40%), Positives = 227/369 (61%), Gaps = 2/369 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP+++ A+ D G+  PTPIQ ++IP V+   D+ GIAQTGTGKT  F+LP+L
Sbjct: 1   MTFEALGLSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + +GR      R L+L PTRELA Q+    + Y K  +    LL+GG+ F  Q + L+
Sbjct: 61  HKIAEGRRHGIRNRALVLSPTRELATQIHQAAKDYAKYLHTNAVLLVGGVDFIRQERNLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R  D+++ TPGR+LDH  R  L + N  +++IDEADRMLDMGF+P I  I   +P  RQ+
Sbjct: 121 RNWDIVVATPGRLLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKGRQS 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL- 239
           LLFSAT    +Q+++  F  +   + V      ++ I   ++ T +  S+K  LL+++L 
Sbjct: 181 LLFSATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWI-TVSHGSQKLGLLKKVLD 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +      IIF   K++  +L  +L   G+   A+HG+  Q  R ++LS F+ G ++++
Sbjct: 240 EGKSETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + HV N+D+P  AE+Y+HRIGRTGRAGR G+A +     D   + +
Sbjct: 300 VATDVAARGLDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPADRDIVRS 359

Query: 360 IEKLIEKKV 368
           IE +  K +
Sbjct: 360 IETMAGKPI 368


>gi|300856701|ref|YP_003781685.1| putative RNA helicase [Clostridium ljungdahlii DSM 13528]
 gi|300436816|gb|ADK16583.1| predicted RNA helicase [Clostridium ljungdahlii DSM 13528]
          Length = 525

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 153/371 (41%), Positives = 232/371 (62%), Gaps = 11/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F+DL L PKV+ A+ D G+ +P+ IQ ++IP++L  +DV G AQTGTGKT +F  PML
Sbjct: 4   INFSDLNLDPKVLQAIDDMGFEEPSQIQAESIPVILDGNDVIGQAQTGTGKTLAFGAPML 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   K   + +    LI+ PTRELA QV D   +  K   + +  + GG P + Q + L+
Sbjct: 64  S---KITTKSKHISALIVTPTRELAIQVNDELSRIAKFKKVALLPIYGGQPIDRQIRSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGRILDH  R  L ++NIE L++DEAD MLDMGFI  I+NI       RQT
Sbjct: 121 RGMDVVVGTPGRILDHIKRKTLDLSNIEFLILDEADEMLDMGFIEDIENIIKATNSDRQT 180

Query: 181 LLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQ 237
           LLFSATM D+++K+S  +++ N K I++   + T +  +  +  +    ++   C +L  
Sbjct: 181 LLFSATMPDQIKKLSSRYMKSNIKSIKIAKNTLTVDKTKQYYYEIKQKDRFESLCRIL-- 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                D   + IIFC  K+ V  L   L+ +G++V  +HG++ Q  R+  L  FKEG+++
Sbjct: 239 ---DVDEPSSAIIFCKTKRGVDELVEGLQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLE 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARG+D+ +V HV N+D+P   E+Y+HRIGRTGRA + G A++LV   +   +
Sbjct: 296 FLVATDVAARGIDVENVSHVINYDLPQDTESYVHRIGRTGRANKEGIAYSLVTPREYILL 355

Query: 358 DAIEKLIEKKV 368
             IEK  + K+
Sbjct: 356 KQIEKFTKSKI 366


>gi|206603692|gb|EDZ40172.1| Putative ATP-dependent RNA helicase [Leptospirillum sp. Group II
           '5-way CG']
          Length = 444

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 151/369 (40%), Positives = 227/369 (61%), Gaps = 2/369 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP+++ A+ D G+  PTPIQ ++IP V+   D+ GIAQTGTGKT  F+LP+L
Sbjct: 1   MTFEALGLSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + +GR      R L+L PTRELA Q+    + Y K  +    LL+GG+ F  Q + L+
Sbjct: 61  HKIAEGRRHGIRNRALVLSPTRELATQIHQAAKDYAKYLHTNAVLLVGGVDFIRQERNLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R  D+++ TPGR+LDH  R  L + N  +++IDEADRMLDMGF+P I  I   +P  RQ+
Sbjct: 121 RNWDIVVATPGRLLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKGRQS 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL- 239
           LLFSAT    +Q+++  F  +   + V      ++ I   ++ T +  S+K  LL+++L 
Sbjct: 181 LLFSATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWI-TVSHGSQKLGLLKKVLD 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +      IIF   K++  +L  +L   G+   A+HG+  Q  R ++LS F+ G ++++
Sbjct: 240 EGKSETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + HV N+D+P  AE+Y+HRIGRTGRAGR G+A +     D   + +
Sbjct: 300 VATDVAARGLDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPADRDIVRS 359

Query: 360 IEKLIEKKV 368
           IE +  K +
Sbjct: 360 IETMAGKPI 368


>gi|317129136|ref|YP_004095418.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315474084|gb|ADU30687.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 528

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 153/368 (41%), Positives = 227/368 (61%), Gaps = 7/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  +S  +  A+ D G+  P+PIQ K IP +L+ HDV G AQTGTGKTA+F +P+L
Sbjct: 2   MKFEDFQISNDIKKAIKDMGFEAPSPIQEKVIPEILKGHDVIGQAQTGTGKTAAFGIPLL 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +   R      ++LIL PTRELA QVA   +K  K     +  + GG     Q K L+
Sbjct: 62  EKVTSDR----QVQSLILTPTRELAIQVAGELQKLSKFKRSQILPIYGGQSIGHQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR+LDH NR  L + ++  L++DEAD MLDMGFI  I+ I   V   RQT
Sbjct: 118 RGVQVVVGTPGRVLDHLNRKTLQLRSVHTLILDEADEMLDMGFIEDIEKILQQVNTNRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++K+S  ++ NPK++ ++    TA +I   +     +   K   L +++ 
Sbjct: 178 MLFSATMPPPIRKLSNKYMNNPKQVTISKGEVTAPSINQVYFKVLEK--NKLDSLCRVID 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+ T+  GIIFC  KK V  L  +L+ +G+    +HG++ Q  R  ++  F++ +I+ ++
Sbjct: 236 SE-TIDLGIIFCRTKKGVAELTEALQARGYMADGLHGDLTQSQRDIVMKKFRDSSIEFLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ +V HV N+D+P   E+Y+HRIGRTGRAGR G A TLV   ++KH+ +I
Sbjct: 295 ATDVAARGIDVENVSHVINYDIPQDPESYVHRIGRTGRAGREGVAVTLVTPREMKHLRSI 354

Query: 361 EKLIEKKV 368
           E  I+  +
Sbjct: 355 EAEIKMTI 362


>gi|326802990|ref|YP_004320808.1| DEAD-box ATP-dependent RNA helicase CshA [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651469|gb|AEA01652.1| DEAD-box ATP-dependent RNA helicase CshA [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 508

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 154/384 (40%), Positives = 234/384 (60%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L P+++ AV + G+ + TPIQ +TIP  L+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFEELNLDPRLLQAVKNMGFEETTPIQAQTIPYALEGRDVLGQAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    L++ PTRELA Q      + GK   +    + GG     Q  +++
Sbjct: 61  EKIDHHTEHIQ---ALVIAPTRELAIQNGQELYRLGKEKGVRTVNVYGGANIRRQIHQIK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA V++ TPGR++D   R  L +N IE LV+DEAD ML+MGFI  I+ I    P  RQT
Sbjct: 118 KGAPVVVGTPGRLIDLMKRKVLNLNFIETLVLDEADEMLNMGFIEDIETIIRATPSNRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+Q++ E+F+Q+P  +++     TA+TI+  F   + +  +K  LL + + 
Sbjct: 178 LLFSATMPKEIQRIGEHFMQDPVTVKIEAKEMTADTIDQYFTKCHDR--EKFDLLTRFID 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  I+F   K+ V  +   L ++G+    IHG++ Q  R  I+ +FK+G ++++V
Sbjct: 236 VSHA-KLAIVFARTKRRVDEVSRGLIERGYQAEGIHGDLSQEKRSSIMKDFKDGRLEILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI +V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISNVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSITFVSNHEMGYLRTI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L  KK       +S L PP E+
Sbjct: 355 ENLTHKK-------MSPLRPPTEE 371


>gi|163758551|ref|ZP_02165638.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
 gi|162283841|gb|EDQ34125.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
          Length = 508

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 163/395 (41%), Positives = 238/395 (60%), Gaps = 20/395 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVK-PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M F+ LGLS K +   LD  ++  PTPIQ + IP VL+  DV G+AQTGTGKTA+F LP+
Sbjct: 10  MLFSQLGLS-KALLDTLDQLHLTTPTPIQTQAIPPVLEGRDVIGLAQTGTGKTAAFTLPI 68

Query: 60  LTILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L  L  G+ A  +  R LIL PTREL+AQ+A   +  G+  +L  A+++GG+    Q K 
Sbjct: 69  LHRLAPGKPAGPKKARVLILSPTRELSAQIAKTVKDLGRKLSLRSAVVVGGVSIRPQIKT 128

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G DVLI TPGR++D   +  + +N IE++V+DEAD+MLD+GF+P I+ I ++ P TR
Sbjct: 129 LASGVDVLIATPGRLMDLIEQRAVSLNEIEVVVLDEADQMLDIGFMPAIKRILAMTPATR 188

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM  E++++S+  L +P  + V     TA+ +EH  +  + Q   K   L  L
Sbjct: 189 QTLLFSATMPKEIRQLSDRHLTDPIEVSVIPAKKTADRVEHSVM--HMQPGAKMGALASL 246

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ +   +  I+F   K+        LE  G +  AIHGN  Q  R + L+ F+ GT+ +
Sbjct: 247 IRDRKGERV-IVFTRTKRGADKAAKRLEGDGINAAAIHGNKSQGQRERALAGFRAGTVPV 305

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+P V  V N+++PN  E Y+HRIGRT RAG  G A T  A ++   + 
Sbjct: 306 LIATDIAARGIDVPGVSLVVNYELPNVPEVYVHRIGRTARAGAEGTAVTFCAPDERSLLR 365

Query: 359 AIEKLIE-----------KKVDWL---NGDLSSLN 379
            IEK+++             VD L   +GD + LN
Sbjct: 366 DIEKMLKVAIPVENAPEGTYVDALADPDGDFAPLN 400


>gi|255023649|ref|ZP_05295635.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-208]
          Length = 399

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 157/371 (42%), Positives = 232/371 (62%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++ GL  K+V +V   G+ + TPIQ KTIPL L   D+ G AQTGTGKTA+F LPM+  
Sbjct: 6   FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++    V+    LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++ 
Sbjct: 66  IDQKSNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NR  L ++++E LV+DEAD ML+MGFI  I+ I   VP  RQTLL
Sbjct: 123 PQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D ++++ E F+ +P+ I +     TA  IE  FV  + +  +K  +L +LL  Q
Sbjct: 183 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+F   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA+
Sbjct: 241 -APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E+
Sbjct: 300 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 359

Query: 363 LIEKKVDWLNG 373
             +K++  L  
Sbjct: 360 TTKKRMQPLQA 370


>gi|295702421|ref|YP_003595496.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294800080|gb|ADF37146.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
          Length = 503

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 156/370 (42%), Positives = 229/370 (61%), Gaps = 6/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS ++  AV   G+ + TPIQ +TIPL L+ HD+ G AQTGTGKTA+F +P++  
Sbjct: 4   FQDLGLSQQLNKAVSKMGFEEATPIQSETIPLALEGHDLIGQAQTGTGKTAAFGIPLI-- 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            EK    V   + LI+ PTRELA QV++   K G+   + V  + GG     Q + L++ 
Sbjct: 62  -EKVDVNVDAIQGLIIAPTRELAVQVSEELYKIGQTKRVRVLSIYGGQDISRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH NR  L + ++  +++DEAD ML+MGFI  I+ I S VP   QTLL
Sbjct: 121 PHIIVGTPGRMLDHINRRTLRLQDVHTVILDEADEMLNMGFIEDIEKILSNVPENHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +++++E F+  PK ++V     T   I   ++    Q  +K  +L +LL  Q
Sbjct: 181 FSATMPTPIRRIAEKFMNEPKVVKVQAKEVTMPNITQYYLEV--QEKRKFDILTRLLDMQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  IIF   K+ V  L  +L  +G+S   IHG++ Q  R+ +L  FKEG+I ++VA+
Sbjct: 239 -SPELAIIFGRTKRRVDELSEALNMRGYSAQGIHGDLTQSKRLSVLRQFKEGSIDVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   +   +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGAAMTFVTPRETGQLHNIER 357

Query: 363 LIEKKVDWLN 372
             ++K++ L 
Sbjct: 358 TTKRKMERLT 367


>gi|148263694|ref|YP_001230400.1| DEAD/DEAH box helicase domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146397194|gb|ABQ25827.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
           Rf4]
          Length = 447

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 152/369 (41%), Positives = 225/369 (60%), Gaps = 6/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F      P V   V  AGY  PTPIQ + IP V+   DV G+AQTGTGKTA+F LP+L
Sbjct: 1   MNFQSFDFHPDVAAGVTAAGYASPTPIQAQAIPPVMLGRDVMGLAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +G+      R LI+ PTRELA Q+ ++    G+   L    + GG+    Q +KL+
Sbjct: 61  HRLMQGKQG--HVRALIVAPTRELAEQIHESISALGRQTRLRSITVYGGVNINPQIQKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G ++++  PGR+LDH  +G + ++ +E+LV+DEAD+M DMGF P I+ I   +P  RQT
Sbjct: 119 SGVEIVVACPGRLLDHIGQGTIDVSRVEVLVLDEADQMFDMGFFPDIRRILKHLPKQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM DE+++++   L +P  ++V   ++   T+ H       +   K  LL +LL+
Sbjct: 179 LLFSATMPDEIRRLAHEVLNDPVTVQVGN-TAPPVTVSHALYPV--EQHLKTPLLLELLR 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             DT ++ ++F   K     L   LEK G+   ++ GN+ Q  R   L  F++GT Q++V
Sbjct: 236 HTDT-ESVLVFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+D+P+ AE Y+HRIGRTGRA R G AFTLV  ED   + AI
Sbjct: 295 ATDIAARGIDVSQISHVVNYDIPDTAEAYVHRIGRTGRAARSGDAFTLVTSEDTAMVRAI 354

Query: 361 EKLIEKKVD 369
           E+ ++  ++
Sbjct: 355 ERALKSSLE 363


>gi|300779124|ref|ZP_07088982.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
 gi|300504634|gb|EFK35774.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
          Length = 373

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 157/364 (43%), Positives = 221/364 (60%), Gaps = 3/364 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L   ++ AV +AGY KPT IQ   IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 2   MSFKSLNLINAIIRAVTEAGYSKPTEIQYTAIPHILAGKDIIGCAQTGTGKTAAFAMPIL 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+K     +  RTLIL PTRELA Q+ +NF  Y K   L+   + GG+    Q   L 
Sbjct: 62  QLLKKYTPDHKEIRTLILTPTRELAIQIEENFAVYSKYLPLSQLSIYGGVSAGGQLAALR 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+L+ TPGR+LD  N+  + ++ IEI V+DEADRMLDMGFI  ++ +  L+P  RQT
Sbjct: 122 KRVDILVATPGRLLDLVNQRHIDLSKIEIFVLDEADRMLDMGFINDVKKVLKLIPQKRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   ++K +E  L NP ++ V   SSTA+T++      + +   K  LL  LLQ
Sbjct: 182 LFFSATMPSGIRKFAETILNNPVKVTVTPVSSTAQTVKQS--VYFVEKRDKTGLLIDLLQ 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++ M+  ++F   K     L   LE  G    AIHGN  Q +R   L +FK   I++++
Sbjct: 240 NEN-MRRSLVFTRTKYIANKLVQQLEGVGIFAAAIHGNKSQTARQNALDDFKSSKIKVLI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV N+++PN  E Y+HRIGRTGRAG  G A +    ++   +  I
Sbjct: 299 ATDIAARGIDIDDLPHVVNYELPNIPETYVHRIGRTGRAGTEGTAISFCDTDERLDLKNI 358

Query: 361 EKLI 364
           +KLI
Sbjct: 359 QKLI 362


>gi|261364093|ref|ZP_05976976.1| ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC 25996]
 gi|288567659|gb|EFC89219.1| ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC 25996]
          Length = 471

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 166/424 (39%), Positives = 254/424 (59%), Gaps = 13/424 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL  ++V A+ + GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 4   FASLGLGSELVSALTEQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 63

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 64  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTA 123

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 124 DLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 183

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT    ++K++++F+  P+ +EV   ++T+  +E   +A  A   KK  LL++
Sbjct: 184 RQTLLFSATFAPPIRKLAKDFMNAPEIVEVAAQNTTSANVEQHIIAVDAL--KKRNLLER 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+     M   I+FC  K++V  +   L ++  +  +IHG+  Q+SR++ L+ FKEG+++
Sbjct: 242 LIVDLQ-MNQVIVFCKTKQSVDQVTRDLVRRNLAAQSIHGDKSQQSRLETLNAFKEGSLR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ K + K  
Sbjct: 301 VLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMF 360

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK--KNYSS 415
           +AI++L     D     +    P     D A  + A      P +S G DR +  +N  S
Sbjct: 361 EAIKELTGN--DLAVERIEGFEPQWWGTD-ADGDAATDTQHAPTRSRGSDRNRSERNNRS 417

Query: 416 QKSH 419
           +++ 
Sbjct: 418 ERNE 421


>gi|261345155|ref|ZP_05972799.1| ATP-dependent RNA helicase DeaD [Providencia rustigianii DSM 4541]
 gi|282566845|gb|EFB72380.1| ATP-dependent RNA helicase DeaD [Providencia rustigianii DSM 4541]
          Length = 660

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 153/381 (40%), Positives = 239/381 (62%), Gaps = 10/381 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS  ++ A+ D GY KP+PIQ + IPL+L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 7   MSFADLGLSASILNALSDLGYEKPSPIQQQCIPLLLNGNDVLGMAQTGSGKTAAFGLPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++     ++ P+ L+L PTRELA QVA+    + K+ N + V  L GG  ++ Q + L
Sbjct: 67  HNIDPD---LKAPQILVLAPTRELAVQVAEALSDFSKHMNRVNVVALYGGQRYDVQLRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  V++ TPGR+LDH  RG L ++ ++ LV+DEAD ML MGFI  ++NI S +P   Q
Sbjct: 124 RQGPQVVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIDDVENIMSQIPAQHQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+++PK I + +  +T   I   +        +K   L + L
Sbjct: 184 TALFSATMPEPIRRITRRFMKDPKEIRIQSSITTRPDIAQSYWTVSGM--RKNEALVRFL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +S+D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K G + ++
Sbjct: 242 ESED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKNGRLDIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKH 356
           +A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   +   +++
Sbjct: 301 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 360

Query: 357 IDAIEKLIEKKVDWLNGDLSS 377
           ++   KL   +VD  N +L S
Sbjct: 361 VERTMKLTIPEVDLPNAELLS 381


>gi|91792251|ref|YP_561902.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91714253|gb|ABE54179.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 473

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 156/375 (41%), Positives = 233/375 (62%), Gaps = 10/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ A+ + GY  PTPIQ K IP++L+ H++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSTLGLSQPILLALEELGYQTPTPIQEKAIPVILEGHNLIAAAQTGTGKTASFVLPLL 60

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            ++         + R +  R LIL PTRELA QVA+N E+Y K+ +LT   + GG+    
Sbjct: 61  ELINNTSLDNTVKVRPKRIRALILTPTRELAVQVAENIEQYSKHLSLTSLAIYGGVDAAP 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             K+L  G D+L+ TPGR+LD + +  +  + +  LV+DEADRMLDMGFI  I  I   +
Sbjct: 121 HKKRLIEGVDILVATPGRLLDMYTQRAVHFDELTHLVLDEADRMLDMGFIEDINKIIDKL 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT++ +++ +++  +Q+ K I ++      + IE    A   +  KK AL
Sbjct: 181 PQERQNLLFSATLSPQVRFLAKTAVQHAKEIAISAKVGKPK-IEQWLTAVDKE--KKSAL 237

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + QL++  D     +IF   K     L   LEK+     AIH    Q SR ++L++FK G
Sbjct: 238 ISQLIKEND-WPQALIFIETKHGAAKLVSQLEKRDIQAEAIHSGRSQASREQVLADFKSG 296

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            ++ +VA+ +A+RGLDI D+  V N+D+P   E+Y+HRIGRTGRAG  G+A + V+ +D 
Sbjct: 297 KVRYLVATGIASRGLDIDDLARVVNYDLPFPPEDYVHRIGRTGRAGAQGEAISFVSNDDF 356

Query: 355 KHIDAIEKLIEKKVD 369
           K++ AIE+L+  +++
Sbjct: 357 KNLCAIERLLGHEIE 371


>gi|308068476|ref|YP_003870081.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus polymyxa
           E681]
 gi|305857755|gb|ADM69543.1| Probable RNA helicase exp9 (Exported protein 9) [Paenibacillus
           polymyxa E681]
          Length = 529

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 145/366 (39%), Positives = 233/366 (63%), Gaps = 6/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  L PKV+ A+ + G+ + TPIQ ++IP+ LQ  D+ G AQTGTGKTA+F +P++  
Sbjct: 4   FAEFDLEPKVIQAITELGFEEATPIQSQSIPIALQGRDMIGQAQTGTGKTAAFGIPLINK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + +   ++R    LI+ PTRELA QVA+  EK  +   L    + GG     Q + L++ 
Sbjct: 64  ISRSDEKIR---ALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRALKKK 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++I TPGR+LDH NR  + + ++  +V+DEAD MLDMGF+  IQ+I   VP  RQT+L
Sbjct: 121 PQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQTML 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +++++E FL+NP+ + V     +A  I+  ++    +  +K   L +L+   
Sbjct: 181 FSATMPANIKRLAEQFLKNPEHVSVIPKQVSAPLIDQAYIEVPER--QKFEALSRLI-DM 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           ++ +  I+F   K+ V  L  +L+K+G+S   +HG++ Q  R  ++  F++G+I ++VA+
Sbjct: 238 ESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  V HV NFD+P   E+Y+HRIGRTGRAG+ G+A++ V   +I H+  IE+
Sbjct: 298 DVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHFIER 357

Query: 363 LIEKKV 368
           +   ++
Sbjct: 358 VTRHRI 363


>gi|307709536|ref|ZP_07645990.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
 gi|307619667|gb|EFN98789.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
          Length = 523

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 150/371 (40%), Positives = 233/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|118580947|ref|YP_902197.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118503657|gb|ABL00140.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
           2379]
          Length = 436

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 161/450 (35%), Positives = 255/450 (56%), Gaps = 20/450 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL  +++ A+   GY  PTPIQ   IP + +  D+   AQTGTGKTA+F LP++
Sbjct: 1   MSFETLGLRAELLSAIAAQGYTNPTPIQTGAIPAIFEGCDLLAGAQTGTGKTAAFALPIV 60

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L +     + R PR L+L PTRELAAQV++    Y +  +L   ++ GG+  +AQ ++
Sbjct: 61  QMLGENIPPDKRRRPRALVLVPTRELAAQVSEQMNNYARRLSLRSTMIYGGVNIQAQIER 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+++ TPGR+LDH  RG + ++ I+ LV+DEADRMLD+GFI  I  +   +P  R
Sbjct: 121 LHRGVDIVVATPGRLLDHAERGTVNLSRIKFLVLDEADRMLDLGFIDAIHKVAQYLPVKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +  ++++++  L  P+RIEV   +  A+ +         + S+K  +L  L
Sbjct: 181 QTLLFSATYSQSIKQLADELLNQPRRIEVARRNIAADAVTQAVYQI--ERSRKREMLSFL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +++       ++F   +     L   L   G    AIH N  Q  R + L+ FK G  ++
Sbjct: 239 IRT-GRWNQVLVFARTRYGADKLTEELLLDGIKASAIHSNKSQSLRTRTLAEFKRGEFRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV N+D+P   E+Y+HRIGRTGRAG  G A +LV++E+   + 
Sbjct: 298 LVATDVAARGLDIERLPHVVNYDLPQVPEDYVHRIGRTGRAGEDGVALSLVSREEQPLLQ 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK- 417
           AIEKL++  +            P + +       A+++  + +     ++ K   + +K 
Sbjct: 358 AIEKLLKYAI------------PRQTLAEFPQYAAKRSIEVKESKQAKEKSKARKTREKL 405

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRG 447
           +  P  E  + S+ ++ ++E  A   G RG
Sbjct: 406 TQAP--EKTRTSRRKKVVEERPAPKTGRRG 433


>gi|270290190|ref|ZP_06196416.1| ATP-dependent RNA helicase DeaD [Pediococcus acidilactici 7_4]
 gi|270281727|gb|EFA27559.1| ATP-dependent RNA helicase DeaD [Pediococcus acidilactici 7_4]
          Length = 511

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 153/384 (39%), Positives = 236/384 (61%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ AVLD GY +PTPIQ +TIP VL   D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MKFTELGLEEDILKAVLDNGYDEPTPIQAETIPDVLAGKDIIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    +I+ PTRELAAQ      K GK     V ++ GG     Q   L+
Sbjct: 61  QNVDLDNPNIQ---AIIVSPTRELAAQTQAEIFKLGKYKRAKVQVVYGGADIRRQINALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + +++++ LV+DEAD MLDMGF+P I+ I    P  RQT
Sbjct: 118 SHPQIVVGTPGRLLDHIGRHTIRLDHVKTLVLDEADDMLDMGFLPDIEKIIEQTPSERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+   F+ +PK++ V +   TA+ ++  ++ +  +  +K  +L +++ 
Sbjct: 178 LLFSATMPAPIKKIGVKFMTDPKQVTVKSKELTADLVDQYYIRS--KEFEKFDMLTRIID 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q + K  ++F   K+ V  +   L  +G++   IHG++ Q+ RM IL  F++G + ++V
Sbjct: 236 VQ-SPKLAVVFGRTKRRVDEVAKGLVARGYNAAGIHGDLTQQRRMNILHQFRDGQLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG HG + T V   ++ ++  +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGAHGTSVTFVTNWEMDYLRDV 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E+L +K+       L  L PP E+
Sbjct: 355 ERLTKKR-------LLPLKPPTEE 371


>gi|293364998|ref|ZP_06611715.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037]
 gi|291316448|gb|EFE56884.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037]
          Length = 524

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 149/371 (40%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS +++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T E ++  ++    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|162149460|ref|YP_001603921.1| ATP-dependent RNA helicase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161788037|emb|CAP57641.1| putative ATP-dependent RNA helicase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 429

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 155/375 (41%), Positives = 232/375 (61%), Gaps = 15/375 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADL L+P ++ A+ + GY  PTPIQ ++IP++L+  D+ G+AQTGTGKTA+F LP+L
Sbjct: 5   MTFADLSLAPTLLRALAEEGYANPTPIQAQSIPMLLEGRDLLGMAQTGTGKTAAFALPLL 64

Query: 61  TILE-------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L        KG ARV     L+L PTREL +Q+AD F  +G++   +V  + GG+   
Sbjct: 65  HRLAMAPRPAPKGGARV-----LVLAPTRELVSQIADGFTSFGRHQPPSVTTIFGGVSQF 119

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L+ G D+++  PGR+LD  ++G   ++ +E LV+DEAD+MLDMGF   I+ I + 
Sbjct: 120 HQVNALKAGVDIIVAAPGRLLDLIDQGLCDLSQLEALVLDEADQMLDMGFARPIERIVAT 179

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  R T+LFSATM   +  ++E+ L++P ++E+  PS+T + IE   +   A   KK A
Sbjct: 180 LPKDRHTVLFSATMPKSIAALAESLLRDPAKVEIAPPSTTVDRIEQSVMFVDA-ADKKAA 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L      +   ++F  QK     +C  + + G +  A+HGN  Q  R + L  F+ 
Sbjct: 239 LLSML--RTPGIGQAVVFTLQKNIANEVCAFITEAGITAEALHGNKSQGQRERALDAFRA 296

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           GT Q++VA+D+AARG+D+  V HVFN D+P+  E+Y+HRIGRTGRAGR+G A TL   E 
Sbjct: 297 GTAQVLVATDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTGRAGRNGFAITLCDAEQ 356

Query: 354 IKHIDAIEKLIEKKV 368
              +  +E+ I + +
Sbjct: 357 RAWLRDVEREIGRAL 371


>gi|148264031|ref|YP_001230737.1| DEAD/DEAH box helicase domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146397531|gb|ABQ26164.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
           Rf4]
          Length = 438

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 149/367 (40%), Positives = 225/367 (61%), Gaps = 5/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL  +++ A+   GY  PTPIQ + IP++ +  D+   AQTGTGKTA+F LP++
Sbjct: 1   MSFESLGLRAELLSAIAAQGYTTPTPIQTEAIPVIFEGCDLLAGAQTGTGKTAAFALPIV 60

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +     + R PR L+L PTRELAAQV++    Y +  +L   ++ GG+  +AQ ++
Sbjct: 61  QRLGENIPPDKRRRPRALVLVPTRELAAQVSEQMNNYARRLSLRSTMIYGGVNIQAQIER 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+++ TPGR+LDH  RG + ++ I+ LV+DEADRMLD+GFI  I  +   +P  R
Sbjct: 121 LHRGVDIVVATPGRLLDHAERGTINLSRIKFLVLDEADRMLDLGFIDDIHKVAEYLPAKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT +  ++++++  L  P+RIEV   +  A+ +         + S+K  +L  L
Sbjct: 181 QTMLFSATYSQSIKQLADELLDQPRRIEVARRNIAADAVTQAVYQV--EKSRKREMLSFL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S+      ++F   +     L   L   G    AIH N  Q  R + L+ FK G  ++
Sbjct: 239 I-SKGNWNQVLVFARTRYGADKLTEELLYDGIKAAAIHSNKSQSIRTRTLAEFKRGEFRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV N+D+P   E+Y+HRIGRTGRAG +G A +LV+ E+   + 
Sbjct: 298 LVATDVAARGLDIERLPHVVNYDLPQVPEDYVHRIGRTGRAGENGVALSLVSHEEQSLLQ 357

Query: 359 AIEKLIE 365
           AIEKL++
Sbjct: 358 AIEKLLK 364


>gi|309798558|ref|ZP_07692833.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
           infantis SK1302]
 gi|308117794|gb|EFO55195.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
           infantis SK1302]
          Length = 525

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 150/371 (40%), Positives = 232/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|304385542|ref|ZP_07367886.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus
           acidilactici DSM 20284]
 gi|304328046|gb|EFL95268.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus
           acidilactici DSM 20284]
          Length = 511

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 153/384 (39%), Positives = 236/384 (61%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ AVLD GY +PTPIQ +TIP VL   D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MKFTELGLEEDILKAVLDNGYDEPTPIQAETIPDVLAGKDIIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    +I+ PTRELAAQ      K GK     V ++ GG     Q   L+
Sbjct: 61  QNVDLDNPNIQ---AIIVSPTRELAAQTQAEIFKLGKYKRAKVQVVYGGADIRRQINALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + +++++ LV+DEAD MLDMGF+P I+ I    P  RQT
Sbjct: 118 SHPQIVVGTPGRLLDHIGRHTIRLDHVKTLVLDEADDMLDMGFLPDIEKIIEQTPSERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+   F+ +PK++ V +   TA+ ++  ++ +  +  +K  +L +++ 
Sbjct: 178 LLFSATMPAPIKKIGVKFMTDPKQVTVKSKELTADLVDQYYIRS--KEFEKFDMLTRIID 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q + K  ++F   K+ V  +   L  +G++   IHG++ Q+ RM IL  F++G + ++V
Sbjct: 236 VQ-SPKLAVVFGRTKRRVDEVAKGLVARGYNAAGIHGDLTQQRRMNILHQFRDGQLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG HG + T V   ++ ++  +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGAHGTSVTFVTNWEMDYLRDV 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E+L +K+       L  L PP E+
Sbjct: 355 ERLTKKR-------LLPLKPPTEE 371


>gi|148557617|ref|YP_001265199.1| DEAD/DEAH box helicase domain-containing protein [Sphingomonas
           wittichii RW1]
 gi|148502807|gb|ABQ71061.1| DEAD/DEAH box helicase domain protein [Sphingomonas wittichii RW1]
          Length = 453

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 160/369 (43%), Positives = 235/369 (63%), Gaps = 5/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL   +  A+   GY  PTPIQ + IP +L+  D+CGIAQTGTGKTA+F LP L  
Sbjct: 18  FSELGLIEPIQRALAAKGYDIPTPIQAQAIPPLLEGRDLCGIAQTGTGKTAAFALPSLHH 77

Query: 63  LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L         +  R L+L PTRELA+Q+A++F +YGK   L+VA + GG+P   Q ++L+
Sbjct: 78  LHDNLKHTPPQGCRMLVLAPTRELASQIAESFVQYGKFLRLSVATVFGGVPINKQIRQLQ 137

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+LD  ++  L +  +EI V+DEAD+MLD+GFI  ++ +  L+P  RQ+
Sbjct: 138 RGVDILVATPGRLLDLIDQRALSLKFVEIFVLDEADQMLDLGFIHALKRVDQLLPKKRQS 197

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   + ++ + FL NP ++ V   S+TAE +E    AT+    +K ALL   ++
Sbjct: 198 LFFSATMPKAIAELGDRFLTNPAKVSVAPQSTTAERVEQ--FATFCNPQEKQALLTMRIR 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S + +   ++F   K     +  +L   G +  AIHGN  Q  R + L  F+ G ++++V
Sbjct: 256 S-EPIDRALVFTRTKHGADRVVKNLRAAGIAAEAIHGNKSQPQRERALGLFRTGEVKILV 314

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HVFNF++PN AE Y+HRIGRT RAG  G A   VA ++  ++ AI
Sbjct: 315 ATDIAARGIDVGGVSHVFNFELPNVAEQYVHRIGRTARAGAAGIAIAFVADDERPYLKAI 374

Query: 361 EKLIEKKVD 369
           EKL + K+D
Sbjct: 375 EKLTKVKLD 383


>gi|331266806|ref|YP_004326436.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5]
 gi|326683478|emb|CBZ01096.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5]
          Length = 525

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 149/371 (40%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS +++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T E ++  ++    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|329960847|ref|ZP_08299126.1| ATP-dependent RNA helicase RhlE [Bacteroides fluxus YIT 12057]
 gi|328532133|gb|EGF58937.1| ATP-dependent RNA helicase RhlE [Bacteroides fluxus YIT 12057]
          Length = 423

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 153/368 (41%), Positives = 231/368 (62%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+ + GY  PTPIQ K+IP++LQ  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MTFENLKLIEPILKALQEEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K   R  + + LIL PTRELA Q+ ++FE YG+   L   ++ GG+  + Q  +L+
Sbjct: 61  QKLYKTDNRKGI-KALILTPTRELAIQIGESFEAYGRYTGLRHTVIFGGVGQKPQTDELK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +L+ TPGR+ D  N+G + +  ++  V+DEADRMLDMGFI  I+ I   +P  RQT
Sbjct: 120 RGVQILVATPGRLQDLVNQGFINLKALDFFVLDEADRMLDMGFIHDIRRILKFLPAKRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++ ++ + L +P+++EV   SST +TI       + +  +K  LL  LL+
Sbjct: 180 LFFSATMPPEIETLANSMLTDPEKVEVTPASSTVDTISQSVY--FVEKKEKKDLLIHLLK 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++ + +IF   K     L  +L K G    AIHGN  Q +R + L+ FK  T+++++
Sbjct: 238 D-PSIASVLIFTRTKHGADKLARTLSKSGIPAEAIHGNKSQNARQRALTGFKSHTLRVLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+++PN  E Y+HRIGRTGRAG  G A +    E++ ++  I
Sbjct: 297 ATDIAARGIDVDQLSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCESEELPYLKDI 356

Query: 361 EKLIEKKV 368
           +KLI K +
Sbjct: 357 QKLIGKTI 364


>gi|114569901|ref|YP_756581.1| DEAD/DEAH box helicase domain-containing protein [Maricaulis maris
           MCS10]
 gi|114340363|gb|ABI65643.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10]
          Length = 452

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 154/371 (41%), Positives = 229/371 (61%), Gaps = 5/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+DLGL+  ++ A+ D GY  PTPIQ + IP +++  D+ GIAQTGTGKTASFVLP+L  
Sbjct: 4   FSDLGLAEPILRALNDEGYETPTPIQREVIPAMIEGRDIVGIAQTGTGKTASFVLPILNR 63

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++E+ R    +  R LIL PTREL+AQ+ +N   Y ++  ++  L++GG+    Q + L 
Sbjct: 64  LIEENRPTHPKTCRALILSPTRELSAQILENVRGYSRHMRVSSTLVVGGVKPGPQIRALS 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVL+ TPGR+LD    G + ++  +IL++DEAD+MLD+GF P I+ I S +P  RQT
Sbjct: 124 KGVDVLVATPGRLLDLMQSGAVKLSETKILILDEADQMLDLGFFPAIRKIVSFLPNKRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            L SATM   ++ +++  L +PK + V   S   E IE   V    + SKK  LL+  L 
Sbjct: 184 ALLSATMPKPIRALAQEMLDDPKEVSVAPASRPIERIEQSVV-LLPKESKKDLLLE--LM 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S   ++  I+F   K     +   L   G    AIHGN  Q  R+K L  FK G ++++V
Sbjct: 241 SDRAVERAIVFSRTKHGADKINRHLVDYGLKSAAIHGNKSQAQRIKALDGFKTGAVKILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ +V HV N D+PN  E+Y+HRIGRT RAG+ G A ++    + +++  I
Sbjct: 301 ATDIAARGIDVDNVSHVVNHDLPNLPESYVHRIGRTARAGKSGVAVSMCEPGEYEYLRDI 360

Query: 361 EKLIEKKVDWL 371
           E+L    +D +
Sbjct: 361 ERLTGLDIDRV 371


>gi|229589245|ref|YP_002871364.1| cold-shock dead-box protein A [Pseudomonas fluorescens SBW25]
 gi|229361111|emb|CAY47974.1| cold-shock dead-box protein A [Pseudomonas fluorescens SBW25]
          Length = 557

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 146/367 (39%), Positives = 234/367 (63%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA   L+P ++ AV+  GY +P+ IQ ++IP+++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAFALPILHC 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPAK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + +++ +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPTRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++P+ +++ T + T   IE   +  +A   +K + +  LL+ 
Sbjct: 185 LFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 243 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKV 368
           ++  +KV
Sbjct: 362 RVTGQKV 368


>gi|225861416|ref|YP_002742925.1| cold-shock DEAD box protein A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298230290|ref|ZP_06963971.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255231|ref|ZP_06978817.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298503322|ref|YP_003725262.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225727400|gb|ACO23251.1| cold-shock DEAD box protein A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238917|gb|ADI70048.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327389770|gb|EGE88115.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA04375]
          Length = 524

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 152/372 (40%), Positives = 234/372 (62%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235

Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q  +   I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++
Sbjct: 236 VAQPEL--AIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  
Sbjct: 294 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI 353

Query: 360 IEKLIEKKVDWL 371
           IE L +K++  L
Sbjct: 354 IENLTKKRMKGL 365


>gi|15901428|ref|NP_346032.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           TIGR4]
 gi|15903483|ref|NP_359033.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae R6]
 gi|111657434|ref|ZP_01408185.1| hypothetical protein SpneT_02001363 [Streptococcus pneumoniae
           TIGR4]
 gi|116516011|ref|YP_816872.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae D39]
 gi|148988638|ref|ZP_01820071.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP6-BS73]
 gi|148993389|ref|ZP_01822906.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|148997346|ref|ZP_01824951.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP11-BS70]
 gi|149003176|ref|ZP_01828072.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS69]
 gi|149007498|ref|ZP_01831133.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP18-BS74]
 gi|168486852|ref|ZP_02711360.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1087-00]
 gi|168488692|ref|ZP_02712891.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae SP195]
 gi|168575216|ref|ZP_02721179.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae MLV-016]
 gi|237650716|ref|ZP_04524968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI
           1974]
 gi|237821935|ref|ZP_04597780.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI
           1974M2]
 gi|303256042|ref|ZP_07342065.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS455]
 gi|303260214|ref|ZP_07346186.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP-BS293]
 gi|303262605|ref|ZP_07348546.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265007|ref|ZP_07350922.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS397]
 gi|303266470|ref|ZP_07352358.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS457]
 gi|303269052|ref|ZP_07354834.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS458]
 gi|307068227|ref|YP_003877193.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           AP200]
 gi|61223743|sp|P0A4D7|EXP9_STRPN RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName:
           Full=Exported protein 9
 gi|61223744|sp|P0A4D8|EXP9_STRR6 RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName:
           Full=Exported protein 9
 gi|14973078|gb|AAK75672.1| putative ATP-dependent RNA helicase [Streptococcus pneumoniae
           TIGR4]
 gi|15459096|gb|AAL00244.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116076587|gb|ABJ54307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae D39]
 gi|147756401|gb|EDK63442.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP11-BS70]
 gi|147758636|gb|EDK65633.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS69]
 gi|147760857|gb|EDK67827.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP18-BS74]
 gi|147925839|gb|EDK76914.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP6-BS73]
 gi|147927944|gb|EDK78964.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|183570214|gb|EDT90742.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1087-00]
 gi|183572869|gb|EDT93397.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae SP195]
 gi|183578956|gb|EDT99484.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae MLV-016]
 gi|301794592|emb|CBW37036.1| DEAD box helicase family protein [Streptococcus pneumoniae INV104]
 gi|301802300|emb|CBW35052.1| DEAD box helicase family protein [Streptococcus pneumoniae INV200]
 gi|302597002|gb|EFL64125.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS455]
 gi|302636322|gb|EFL66816.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638711|gb|EFL69174.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP-BS293]
 gi|302641442|gb|EFL71807.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS458]
 gi|302644048|gb|EFL74307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS457]
 gi|302645526|gb|EFL75758.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS397]
 gi|306409764|gb|ADM85191.1| Superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           AP200]
 gi|332072430|gb|EGI82913.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA17570]
 gi|332199626|gb|EGJ13701.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA41317]
 gi|332200146|gb|EGJ14219.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA47368]
 gi|332201024|gb|EGJ15095.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA47901]
          Length = 524

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 152/372 (40%), Positives = 234/372 (62%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235

Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q  +   I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++
Sbjct: 236 VAQPEL--AIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  
Sbjct: 294 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI 353

Query: 360 IEKLIEKKVDWL 371
           IE L +K++  L
Sbjct: 354 IENLTKKRMKGL 365


>gi|218261592|ref|ZP_03476346.1| hypothetical protein PRABACTJOHN_02014 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223947|gb|EEC96597.1| hypothetical protein PRABACTJOHN_02014 [Parabacteroides johnsonii
           DSM 18315]
          Length = 419

 Score =  296 bits (758), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 161/422 (38%), Positives = 252/422 (59%), Gaps = 8/422 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L   +  A+    Y  PTPIQ + IPLVL   D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFEQLELIEPIRKALKKEKYTTPTPIQAEAIPLVLDGSDLLGCAQTGTGKTAAFSIPII 60

Query: 61  TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +E+  +    P  + L+L PTRELA Q+ ++F  YG   ++   ++ GG+  + Q   
Sbjct: 61  QKIEEQISSRCKPGIKALVLTPTRELAIQIGESFTAYGCYTHVKHTVIFGGVGQKPQTDA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG DVLI TPGR+LD  ++G + ++ +E  V+DEADRMLDMGFI  I+ I  L+P  R
Sbjct: 121 LERGVDVLIATPGRLLDLLSQGFIRLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+++++   L  P+++EV   SST +TI+      + +  +K  LL+ L
Sbjct: 181 QSLFFSATMPPEIERLAGTILHEPEKVEVTPVSSTVDTIDQSVY--FVEKVEKINLLKNL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ + ++++ ++F   K     +   L K G    AIHG+  Q +R + LS+FK+ T+++
Sbjct: 239 LEDR-SLESVLVFTRTKYGADKVARVLNKSGIGAEAIHGDKGQNARQRALSSFKDHTLRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RG+D+  + HV N+D+PN  E Y+HRIGRTGRAGR G AF+    E++ ++ 
Sbjct: 298 LIATDIASRGIDVDHLSHVINYDLPNVPETYVHRIGRTGRAGRSGIAFSFCDVEEVPYLK 357

Query: 359 AIEKLIEKKVDWLNGDL---SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            I+KLI K V    G +   + +   + +   A    +++ N    K  G   R K  ++
Sbjct: 358 DIQKLIGKDVPVAGGHMFETAEVKEAVAEKKKAMKEESKRRNMFGNKRDGSFWRNKKRTA 417

Query: 416 QK 417
            K
Sbjct: 418 NK 419


>gi|260063256|ref|YP_003196336.1| DEAD/DEAH box helicase-like protein [Robiginitalea biformata
           HTCC2501]
 gi|88783350|gb|EAR14522.1| DEAD/DEAH box helicase-like protein [Robiginitalea biformata
           HTCC2501]
          Length = 422

 Score =  296 bits (758), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 158/375 (42%), Positives = 228/375 (60%), Gaps = 6/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L+  ++ A+    Y +PT IQ + IP VL R DV G AQTGTGKTA+F +P+L
Sbjct: 1   MTFEQLELAEPILRALKKENYSRPTDIQAQAIPHVLNRRDVMGSAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             LE+ R    +  +   LI+ PTRELA Q+ ++   YG    +   ++ GG+    Q +
Sbjct: 61  QHLERDRRYGGKRGVVNALIVTPTRELAIQIGESLTAYGHYTGIRNTVIFGGVKQGKQVE 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+L+ TPGR+LD  ++G + ++ +E  V+DEADRMLDMGFI  I+ I + +P  
Sbjct: 121 ALRRGVDILVATPGRLLDLMDQGIISLSKVEYFVLDEADRMLDMGFIHDIRKIIARLPAE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+L FSATM D++  +S   L +P ++ V+  SSTAETI       Y   S K  LL  
Sbjct: 181 RQSLFFSATMPDDIVSLSRKILSDPVKVAVSPVSSTAETIRQYLY--YTNKSDKNDLLLH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+  D M   ++F   K     +  +L K+  S  AIHGN  Q  R K L  FK+G ++
Sbjct: 239 ILKDPD-MDQVLLFARTKHGADRIVKNLGKKKISAAAIHGNKSQNQRQKALGQFKDGKVR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  + +V NFD+PN AE Y+HRIGR+GRAG  G + +L   E+  +I
Sbjct: 298 VLVATDIAARGIDIDQLRYVVNFDIPNVAETYVHRIGRSGRAGEEGVSISLCEPEENAYI 357

Query: 358 DAIEKLIEKKVDWLN 372
             IEKLI+ K++ + 
Sbjct: 358 RDIEKLIDLKIERVE 372


>gi|257899462|ref|ZP_05679115.1| helicase [Enterococcus faecium Com15]
 gi|293573030|ref|ZP_06683972.1| cold-shock deAd box protein a [Enterococcus faecium E980]
 gi|257837374|gb|EEV62448.1| helicase [Enterococcus faecium Com15]
 gi|291606932|gb|EFF36312.1| cold-shock deAd box protein a [Enterococcus faecium E980]
          Length = 503

 Score =  296 bits (758), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 155/384 (40%), Positives = 237/384 (61%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LSP+++ +V  AG+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKELELSPELLKSVERAGFEEATPIQAETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R  ++    L++ PTRELA Q  +   + G++  + V  + GG     Q + L+
Sbjct: 61  EKIDPDRHELQ---GLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  ++ LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPEQRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F+++P  +++     TA+ I+  +V   A+  +K  ++ +L  
Sbjct: 178 LLFSATMPPAIKNIGVKFMKSPHHVKIKAKEMTADLIDQYYVR--AKEYEKFDIMTRLFD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 236 VQ-TPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKNGHLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       +++L PP EK
Sbjct: 355 ENLTKKR-------MTTLRPPTEK 371


>gi|254490715|ref|ZP_05103899.1| DbpA RNA binding domain family [Methylophaga thiooxidans DMS010]
 gi|224464070|gb|EEF80335.1| DbpA RNA binding domain family [Methylophaga thiooxydans DMS010]
          Length = 605

 Score =  296 bits (758), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 152/367 (41%), Positives = 231/367 (62%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LG++P +V A+ +AGY  P+PIQ ++I  +L+  D+ G AQTGTGKTA+F LP+L+ 
Sbjct: 12  FSELGIAPAIVKAIQEAGYETPSPIQAQSITPLLEGRDLLGQAQTGTGKTAAFSLPLLSR 71

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L     R + P+ L+L PTRELA QVA+  + YG++  N  V  + GG     Q ++L+R
Sbjct: 72  LND---RQKTPQMLVLTPTRELAIQVAEAIQGYGRHIKNFHVLPIYGGQSMGIQLRQLQR 128

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGRILDH  RGKL + N++ LV+DEAD ML MGFI  ++ I    P  RQ  
Sbjct: 129 NPQVIVGTPGRILDHIRRGKLALENLQSLVLDEADEMLRMGFIDDVETILQETPKDRQVA 188

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   + +V++ +L NP  + + + +ST +TI   +      +  K   L ++L+ 
Sbjct: 189 LFSATMPKPIHRVAQRYLNNPVEVHIKSKTSTVDTINQRYWQVTGLH--KLDALTRILEV 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++     IIF   K + V+L   LE +G++   ++G+++Q  R K +   K G I ++VA
Sbjct: 247 EE-FDGMIIFVRTKNSTVDLAEKLEARGYASSPLNGDMNQALREKTIEKMKAGKIDILVA 305

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   VA  + + + AIE
Sbjct: 306 TDVAARGLDIQRMSHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLGAIE 365

Query: 362 KLIEKKV 368
           K  ++ +
Sbjct: 366 KATKQTI 372


>gi|114564231|ref|YP_751745.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114335524|gb|ABI72906.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 433

 Score =  296 bits (758), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 157/367 (42%), Positives = 233/367 (63%), Gaps = 7/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P+++ A+ + GY   TPIQ + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MKFESFSFAPEILRAIAECGYQSMTPIQQQAIPAIRRGEDVLASAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             +     +  MP   RTLIL PTRELAAQVADN   Y K+ NLTV  + GG+  + Q++
Sbjct: 61  QRMCDN-PKETMPSNTRTLILTPTRELAAQVADNISAYSKHLNLTVLTIYGGVKIDTQSQ 119

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+RGADV++ TPGR+L+H     L ++N+E LV+DEADRMLDMGF   I+ I   V   
Sbjct: 120 KLKRGADVIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSADIKKILQAVNKK 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ +LFSAT + E++K++ + L+ PK I V+  ++TA+T+    V    +  +K  L+ +
Sbjct: 180 RQNMLFSATFSSEVKKLANDMLEKPKVITVDKQNTTADTVSQ--VVYPVEQRRKRELISE 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ +++  +  ++F   +     L   L   G     +HG   Q SR + L  F EG I+
Sbjct: 238 LIGTKN-WQQVLVFTATRDAADKLVKELNLDGIPSGVVHGEKAQGSRRRALREFVEGKIR 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+++AARGLDI ++ +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + +
Sbjct: 297 VLVATEVAARGLDIKNLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTL 356

Query: 358 DAIEKLI 364
             IEKLI
Sbjct: 357 ADIEKLI 363


>gi|86358753|ref|YP_470645.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
 gi|86282855|gb|ABC91918.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
          Length = 560

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 151/375 (40%), Positives = 233/375 (62%), Gaps = 4/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LG+S  +V  +   G   PTPIQ + IPL+L+  D+ G+AQTGTGKTA+F LP++ 
Sbjct: 24  NFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 83

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L  ++ R   R  RTLIL PTREL  Q+A+N +K+ +   L + +++GG+    Q  +L
Sbjct: 84  KLLADERRPDNRTTRTLILAPTRELVNQIAENLKKFIRKSPLRINVVVGGVSINKQQLQL 143

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G D+L+ TPGR+LD  NR  + +  +  LV+DEAD+MLD+GF+  ++ I  LVP  RQ
Sbjct: 144 EKGTDILVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDLGFVHDLRKIAKLVPKKRQ 203

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   +  ++  +L +P ++EV  P   A+ +E  +V      + K  LL++ L
Sbjct: 204 TMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQ-YVHFVGGKNDKTELLRKSL 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++     I+F   K     L   L+  G+SV +IHGN  Q  R + L  F++G+I+ +
Sbjct: 263 -TENPDGRAIVFLRTKHGAEKLMKHLDNIGYSVASIHGNKSQGQRERALKAFRDGSIKTL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DIP V HV+N+D+P   + Y+HRIGRT RAGR G A    A ++ K +  
Sbjct: 322 IATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRD 381

Query: 360 IEKLIEKKVDWLNGD 374
           IE+L+   +   +G+
Sbjct: 382 IERLMGIDITVASGE 396


>gi|126726299|ref|ZP_01742140.1| DEAD/DEAH box helicase [Rhodobacterales bacterium HTCC2150]
 gi|126704162|gb|EBA03254.1| DEAD/DEAH box helicase [Rhodobacterales bacterium HTCC2150]
          Length = 438

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 151/383 (39%), Positives = 236/383 (61%), Gaps = 12/383 (3%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +GLSP+++  +   G+  PTPIQ + IP +L   D+ G+AQTGTGKTA+F LP+L  L  
Sbjct: 1   MGLSPRILDRLSSKGFTDPTPIQSQAIPHILNGRDIMGLAQTGTGKTAAFGLPILHHLWH 60

Query: 66  --GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
              +   R  R LIL PTRELA+Q+ +N   + ++ +L VAL++GG+    Q K+L++G 
Sbjct: 61  VGTKPEDRSARALILAPTRELASQITENLLIFSRDTHLKVALVVGGVSINTQIKRLQKGT 120

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
           DVL+ TPGR+LD  NR  + +++   LV+DEAD+MLDMGFI  ++ I++ +P  RQT++F
Sbjct: 121 DVLVATPGRLLDLLNRRAITLSDARYLVLDEADQMLDMGFIHDLRKISTHLPEERQTMMF 180

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM   + +++E +L +P R++V+ P   A+ +       +     K   L++LL +  
Sbjct: 181 SATMPKLMGELAETYLNSPLRVQVSPPGKAADKVTQEV--HFMLQGDKGQHLKKLLGNHR 238

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +  ++F   K     L   L   GF+  +IHGN  Q  R + L  FK G ++++VA+D
Sbjct: 239 E-ERALVFSRTKHGAEKLKKGLVAVGFAAASIHGNKSQGQRTRALEEFKSGEVKILVATD 297

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARG+DIP V +V+N+D+PN  ENY+HRIGRT RAG  G A    + +++  + AIEK+
Sbjct: 298 VAARGIDIPQVMYVYNYDLPNVPENYVHRIGRTARAGAEGTAIAFCSPDEMGELRAIEKV 357

Query: 364 IEKKVD------WLNGDLSSLNP 380
           ++  +       W +GD+    P
Sbjct: 358 LKSTIKISHGKPW-DGDIEGRGP 379


>gi|57235067|ref|YP_180931.1| DEAD-box ATP dependent DNA helicase [Dehalococcoides ethenogenes
           195]
 gi|57225515|gb|AAW40572.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dehalococcoides
           ethenogenes 195]
          Length = 560

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 153/375 (40%), Positives = 227/375 (60%), Gaps = 8/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P V+  V   GY +PTPIQ + IP +L+ HDV G+AQTGTGKTA++ LP++
Sbjct: 1   MSFESFNFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVI 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L   R RVR   TL+L PTRELA Q+A++F   G+   +    + GG+  + Q ++L
Sbjct: 61  QKMLSTPRGRVR---TLVLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIRRL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DV++  PGR+LDH  RG + +  +E L+IDEADRM DMGF P IQ+I   +    Q
Sbjct: 118 RSGVDVVVACPGRLLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E++K++     NP  I++ T  + A ++ H       +  +K  LL ++L
Sbjct: 178 TLLFSATMPPEVRKLTLETQTNPVTIQIGT-QAPASSVSHSVYPV--KNHQKTPLLIEIL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++ +T K+ +IF   K    NL   + + GF+  ++ GN+ Q  R  ++  F+ G  +++
Sbjct: 235 KTTET-KSVLIFARTKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFKIL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + HV N+D+P+  E+Y HRIGRTGR  R G+A +LV   D   +  
Sbjct: 294 VATDIAARGLDIDHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMVRD 353

Query: 360 IEKLIEKKVDWLNGD 374
           I+KLI   +  L  D
Sbjct: 354 IQKLINSPIQRLRVD 368


>gi|258516257|ref|YP_003192479.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779962|gb|ACV63856.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 539

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 158/367 (43%), Positives = 230/367 (62%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L+ ++V A+++ G+ +PTPIQ KTIP+ L+  D+ G AQTGTGKTA+F +P   +
Sbjct: 14  FGELTLNSRIVQALVNMGFEEPTPIQQKTIPISLEGKDIIGQAQTGTGKTAAFAIP---V 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-ER 121
           LEK  +R    + LI+ PTRELA QVA+     GK   +    + GG   + Q K L ++
Sbjct: 71  LEKIDSRRNGVQALIITPTRELAIQVAEEISNIGKYCRIRALPIYGGQSIDRQIKALKQQ 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH  RG L +  +  +V+DEAD MLDMGFI  I+ I +  P TRQT 
Sbjct: 131 RVQIVIGTPGRLLDHLRRGTLRLEQVATVVLDEADEMLDMGFIEDIEAILNQTPTTRQTF 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ +E+ ++S  +L +P+ I V+  + T   IE  +  T  + S K   L +LL +
Sbjct: 191 LFSATIPEEILRLSRKYLNSPEFITVSRNNLTVPLIEQVYYET--RESTKLDALARLLDA 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D +   IIFC  K+ V  L  SL+ +G+    +HG++ Q  R  ++  FK G ++ +VA
Sbjct: 249 LD-ISLAIIFCRTKRGVDELVASLQVRGYQAAGLHGDLSQYQRNHVMRQFKAGQVEFLVA 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI +V HV NFDVP   E Y+HRIGRTGRAG+ G A +LV+  D + +  IE
Sbjct: 308 TDVAARGLDIENVSHVINFDVPQDPEFYVHRIGRTGRAGKTGMAISLVSPRDFRQLRLIE 367

Query: 362 KLIEKKV 368
           K+ + +V
Sbjct: 368 KITKSRV 374


>gi|254506284|ref|ZP_05118427.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
 gi|219550764|gb|EED27746.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
          Length = 426

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 163/408 (39%), Positives = 241/408 (59%), Gaps = 15/408 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA    SP++V A+ + GY K TP+Q K IP   + HD+   AQTGTGKTA+F LP++
Sbjct: 1   MSFASQNFSPEIVKALTECGYEKLTPVQQKAIPFARKGHDILANAQTGTGKTAAFALPIV 60

Query: 61  -TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             IL+  + R R   R +IL PTRELAAQ+A N + Y K  ++    + GG    +Q K 
Sbjct: 61  QNILDNEKPRQRHQTRAVILAPTRELAAQIASNIQDYTKYTDVKTVAIYGGAKMSSQQKA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G DVL+ TPGR+++H +   + + N+E LV DEADRMLDMGFI  I++I + V    
Sbjct: 121 LEAGVDVLVATPGRLIEHMDMNNVSLANLEFLVFDEADRMLDMGFISAIESIMAGVNTKP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT + ++  ++   L+ PKR+ V   + TA+TI H  V    +  +K  LL +L
Sbjct: 181 QTMLFSATFSAQMNTLAGKILRQPKRVSVARENVTADTIAH--VVYPVEQERKRELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F N K+    L   L+  G      HG+  Q +R + L  FK G  ++
Sbjct: 239 I-GRKNWQQVLVFVNYKETANELVKELKLDGIKAVLCHGDKAQSARRRALDEFKSGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+D+AARGLDI ++ HV NFD+P  AE+Y+HRIGRTGRAG+ G A + V +E+   + 
Sbjct: 298 MIATDVAARGLDIQNLPHVVNFDMPFLAEDYVHRIGRTGRAGQRGNAVSFVNREEELTLQ 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPP-----LEKIDIA---QHNHARKNNP 398
            +E LI +++     +L    P      LE++      ++   R+NNP
Sbjct: 358 QVETLIGQRI--YRKELEGYEPKNRDALLERMHTKPAFKNRRTRQNNP 403


>gi|149022054|ref|ZP_01836016.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP23-BS72]
 gi|147929898|gb|EDK80887.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP23-BS72]
          Length = 511

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 152/372 (40%), Positives = 234/372 (62%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235

Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q  +   I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++
Sbjct: 236 VAQPEL--AIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  
Sbjct: 294 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI 353

Query: 360 IEKLIEKKVDWL 371
           IE L +K++  L
Sbjct: 354 IENLTKKRMKGL 365


>gi|312959777|ref|ZP_07774293.1| RNA-binding:Dead/DEAH box helicase [Pseudomonas fluorescens WH6]
 gi|311285943|gb|EFQ64508.1| RNA-binding:Dead/DEAH box helicase [Pseudomonas fluorescens WH6]
          Length = 557

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 146/367 (39%), Positives = 234/367 (63%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA   L+P ++ AV+  GY +P+ IQ ++IP+++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAFALPILHC 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPAK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + +++ +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPTRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++P+ +++ T + T   IE   +  +A   +K + +  LL+ 
Sbjct: 185 LFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 243 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKV 368
           ++  +KV
Sbjct: 362 RVTGQKV 368


>gi|312892306|ref|ZP_07751801.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311295090|gb|EFQ72264.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 428

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 153/384 (39%), Positives = 241/384 (62%), Gaps = 6/384 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY  PTPIQ ++IP++L+R D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MSFENLKLIEPILKALKHEGYTNPTPIQEQSIPIILERKDLLGCAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            IL + + + R     +TLIL PTRELA Q+ ++F  YGK+  L   ++ GG+    Q +
Sbjct: 61  QILYQEKVQNRDHKGIKTLILTPTRELAIQIDESFAAYGKHTGLKHLVIFGGVSQHHQVE 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+RG D+L+ TPGR+LD   +  + + +++ILV+DEADRMLDMGF+  ++ I + +P  
Sbjct: 121 ALKRGVDILVATPGRLLDLVQQKFVHLESLKILVLDEADRMLDMGFVNDVKKIIAKIPVK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL FSATM  E+Q +++  L  P+++EV   SSTA+TI+      +   + K +LL  
Sbjct: 181 RQTLFFSATMPKEIQTLADTILNKPEKVEVTPVSSTADTIQQGIY--FVDKNDKKSLLIH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+ +  ++  ++F   K     +   L + G +  AIHGN  Q +R + L+NFK  + +
Sbjct: 239 ILKDKK-IETALVFTRTKHGADKVVKDLIRVGITAEAIHGNKSQNARQRALTNFKNRSTR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ D+ HV N+++PN  E Y+HRIGRTGRAG  G A +    ++ + +
Sbjct: 298 ILVATDIAARGIDVDDLTHVINYELPNVPETYVHRIGRTGRAGASGIALSFCDADEGEFL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPP 381
             I KLI K +  ++     +  P
Sbjct: 358 YDIHKLITKAIPVIDDQPYPMKAP 381


>gi|103487431|ref|YP_616992.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
 gi|98977508|gb|ABF53659.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
          Length = 459

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 149/371 (40%), Positives = 225/371 (60%), Gaps = 5/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL   +  A+    Y +PTPIQ + IP +++  D+CGIAQTGTGKTA F LP +  
Sbjct: 4   FNDFGLHADINRALAAKDYTQPTPIQTQAIPPLMKGRDLCGIAQTGTGKTAGFSLPSIHH 63

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L     R   R  R L+L PTRELAAQ+A +   YG+   L+V+ + GG+P   Q + L 
Sbjct: 64  LLTYPHRPTPRGCRMLVLAPTRELAAQIAQSCRDYGRFTKLSVSTVFGGVPINKQIRDLS 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+LD  ++  L ++++EI V+DEAD+M+DMGFI  ++ +  L+P  RQ 
Sbjct: 124 QGVDILVATPGRLLDLIDQRALRLDDVEIFVLDEADQMMDMGFIHSLRRVAKLLPSRRQN 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+  +++ FL +P  + V   ++TAE +     AT+ +  +K ALL  +++
Sbjct: 184 LFFSATMPKEIAGLADQFLNDPVTVSVAPQATTAEKVRQ--FATFVEQKEKQALLHHVIK 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D +   +IF   K     +   L+  G    AIHGN  Q  R   L  F+ G ++L+V
Sbjct: 242 TSD-IDRALIFTRTKHGADRVVRHLKGAGIEAFAIHGNKSQAQRTAALQAFRSGQVRLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV NF++PN  E Y+HRIGRT RAG  G A + +A ++  +I  I
Sbjct: 301 ATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGAEGIAISFIAPDERPYIRDI 360

Query: 361 EKLIEKKVDWL 371
           E++   + + +
Sbjct: 361 ERVTRTRAEPM 371


>gi|308050752|ref|YP_003914318.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307632942|gb|ADN77244.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 426

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 158/370 (42%), Positives = 227/370 (61%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA  G  P++V A+   GY K TPIQ K IPL  + HD+   AQTGTGKTA+F LPML
Sbjct: 1   MSFASQGFCPEIVQALEQCGYQKMTPIQQKAIPLARKGHDILANAQTGTGKTAAFALPML 60

Query: 61  -TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            ++++K + R R   R LIL PTRELA QVADN  +Y +    T A+  GG+   +Q ++
Sbjct: 61  QSMVDKPQQRSRRHVRGLILAPTRELAQQVADNVAQYHQFLPFTSAVAYGGVKMASQARQ 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +      + +  +E LV+DEADRMLDMGFI  IQ I   +    
Sbjct: 121 LEAGVDILVATPGRLQELMEMNMVSLAQVEYLVLDEADRMLDMGFIGDIQRIRDQIKLPH 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT   ++++++   L+ PK + V   + TAET+ H F        +K  LL +L
Sbjct: 181 QTMLFSATYPPKMKQLAAELLKKPKMVSVGEENRTAETVAHVFYPV--DEDRKIELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F N K++   +   L   G +    HG+  Q +R + L  FKEG +++
Sbjct: 239 I-GRKNWQQVLVFVNYKEHADAIAEELNNDGLTTGVCHGDRSQGNRRRALKEFKEGKLRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV N+D+P  AE+Y+HRIGRTGRAG  G A +LV +ED     
Sbjct: 298 LVATDVAARGLDIQGLPHVVNYDLPFLAEDYVHRIGRTGRAGLQGHAVSLVGREDELTAV 357

Query: 359 AIEKLIEKKV 368
            IE+LI +++
Sbjct: 358 QIERLIGQRI 367


>gi|301162651|emb|CBW22198.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 638R]
          Length = 427

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 153/368 (41%), Positives = 231/368 (62%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY  PTPIQ ++IP++LQ  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MTFENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K   R  + + L+L PTRELA Q+ ++FE YG+   L  A++ GG+  + Q   L 
Sbjct: 61  QKLYKTDHRKGI-KALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALR 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +L+ TPGR+LD  ++G + +++++  V+DEADRMLDMGFI  I+ I  L+P  RQT
Sbjct: 120 SGIQILVATPGRLLDLISQGFISLSSLDFFVLDEADRMLDMGFIHDIKRILKLLPARRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++ ++ + L  P+++EV   SST + I       + +  +K  LL  LL+
Sbjct: 180 LFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVY--FVEKKEKKDLLIHLLK 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++++ +IF   K     L   L K G    AIHGN  Q +R + L+NFK  T++ ++
Sbjct: 238 D-TSIESVLIFTRTKYGADKLARVLTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+++PN  E Y+HRIGRTGRAG  G A +    E++ ++  I
Sbjct: 297 ATDIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLKDI 356

Query: 361 EKLIEKKV 368
           +KLI KK+
Sbjct: 357 QKLIGKKI 364


>gi|93006205|ref|YP_580642.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5]
 gi|92393883|gb|ABE75158.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5]
          Length = 552

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 147/369 (39%), Positives = 233/369 (63%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG++  ++ A+  +GY  PTPIQ + IP  L   D+   AQTG+GKTA+FV+P+L  
Sbjct: 40  FTDLGIAKPILTALDRSGYTNPTPIQAQAIPFALAGRDLLLSAQTGSGKTAAFVIPVLDR 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L +  +  ++ + LIL PTRELA QV D+   Y K+   L    L+GG P+  Q   L++
Sbjct: 100 LSRATSFDKLTKALILTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGAPYNGQITALKK 159

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH N G++ ++++EILV+DEADRMLDMGF   I +I    P  RQT+
Sbjct: 160 GVQVIVATPGRLLDHINAGRVDLSSLEILVLDEADRMLDMGFADDISDILRAAPTDRQTI 219

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + SAT    + K++ +F +NP+R+ +   S+   E + +C       +  K  LL +++ 
Sbjct: 220 MCSATWDGPVGKIAASFTKNPERVSIKVESAHIEEKVYYC-----DDFDHKNRLLDKIVC 274

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD M+  IIF   K++   L   L++ G     +HG++ Q  R +I+ + + G ++++V
Sbjct: 275 QQD-MEQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKVKILV 333

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP + HV N+D+P + E+Y+HRIGR GRAGR G A +L + +D   ++AI
Sbjct: 334 ATDVAARGLDIPAISHVINYDLPRQTEDYVHRIGRCGRAGRTGIAISLCSMDDRPQLNAI 393

Query: 361 EKLIEKKVD 369
            + +++K++
Sbjct: 394 NRYLDRKME 402


>gi|83953760|ref|ZP_00962481.1| DEAD/DEAH box helicase [Sulfitobacter sp. NAS-14.1]
 gi|83841705|gb|EAP80874.1| DEAD/DEAH box helicase [Sulfitobacter sp. NAS-14.1]
          Length = 444

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 158/389 (40%), Positives = 242/389 (62%), Gaps = 15/389 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  +GL  ++V A+ + G   PTPIQ + IP  +   DV G+AQTGTGKTA+F +P++ 
Sbjct: 14  DFEMMGLPRRLVKALTNMGMTDPTPIQKQAIPHGMNGRDVMGLAQTGTGKTAAFGIPLVA 73

Query: 62  -ILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +LE+  R   R  R L+L PTRELA Q+ +N + + +   L   +++GG     Q K++
Sbjct: 74  QMLEREARPEPRTVRGLVLAPTRELANQIMENLKGFCEGTQLKTMMIVGGQSINPQIKRM 133

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+L+ TPGR+LD  +R  +L++    LV+DEAD+MLDMGFI  ++ I +++P  RQ
Sbjct: 134 ERGVDLLVATPGRLLDLMDRRAVLLHKTTFLVLDEADQMLDMGFIHDLRKIAAVLPKERQ 193

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQ 237
           T+LFSATM   + +++ ++L +P RIEV+ P   A+ I  E  F+A     ++K +LL +
Sbjct: 194 TMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKITQEVHFIAK----AEKKSLLIE 249

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL  + T +  ++F   K     L   L K GF   +IHGN  Q  R + + +FK+G + 
Sbjct: 250 LL-GKHTEERALVFGRTKHGCEKLMKDLVKAGFKAASIHGNKSQGQRDRAIESFKKGEVT 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIPDV HV+N+++PN  +NY+HRIGRT RAG+ G A    A +++  +
Sbjct: 309 VLVATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGEL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
             I+K ++  +   +G       P E ID
Sbjct: 369 KDIQKTMKISIPVASGR------PWEAID 391


>gi|167769379|ref|ZP_02441432.1| hypothetical protein ANACOL_00705 [Anaerotruncus colihominis DSM
           17241]
 gi|167668347|gb|EDS12477.1| hypothetical protein ANACOL_00705 [Anaerotruncus colihominis DSM
           17241]
          Length = 439

 Score =  296 bits (757), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 156/371 (42%), Positives = 230/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ AV D GYV+P+ IQ + IP  L  HDV G AQTGTGKTA+F +P+L
Sbjct: 19  MKFEELGLIQPILRAVRDEGYVEPSAIQQQAIPPALAGHDVLGCAQTGTGKTAAFAIPIL 78

Query: 61  TILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L+   A ++ P   R L+L PTRELA Q+ D+F+ YG+   L   ++ GG+P   Q  
Sbjct: 79  QRLDTQCASIKTPCVIRALVLTPTRELAIQIKDSFQSYGRYMRLRSTVVFGGVPQTPQVD 138

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG D+L+ TPGR+ D   +G + ++++ + V+DEADRMLDMGFI  ++ + + +P  
Sbjct: 139 ELRRGVDILVATPGRLNDLIGQGIIDLSSVSVFVLDEADRMLDMGFIHDVERVINHLPNK 198

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL FSATM   +  + +  L +P ++ V   SS  E IE      +     K  LL  
Sbjct: 199 RQTLFFSATMPKAIMHLCDRILTDPVKVAVTPVSSPVEAIEQRLY--FVDKPNKRRLLIY 256

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+   ++ + ++F   K     +   L K G    AIHG+  Q +R + LS FK G I+
Sbjct: 257 LLEDV-SIVSALVFTFTKHGADRVARELVKAGIKAQAIHGDKSQGARQRALSAFKNGDIR 315

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++ HVFN+D+PN  E Y+HRIGRTGRAG  G A +  +  +++++
Sbjct: 316 VLVATDIAARGIDIDELSHVFNYDLPNIPETYVHRIGRTGRAGLGGIAISFCSIVEMENL 375

Query: 358 DAIEKLIEKKV 368
            AIEKLI +K+
Sbjct: 376 HAIEKLIGRKI 386


>gi|168491523|ref|ZP_02715666.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC0288-04]
 gi|168493488|ref|ZP_02717631.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC3059-06]
 gi|182684538|ref|YP_001836285.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           CGSP14]
 gi|221232344|ref|YP_002511497.1| DEAD/DEAH box helicase [Streptococcus pneumoniae ATCC 700669]
 gi|225855026|ref|YP_002736538.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           pneumoniae JJA]
 gi|182629872|gb|ACB90820.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           CGSP14]
 gi|183574224|gb|EDT94752.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC0288-04]
 gi|183576330|gb|EDT96858.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC3059-06]
 gi|220674805|emb|CAR69378.1| DEAD box helicase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225724107|gb|ACO19960.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           pneumoniae JJA]
          Length = 524

 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 152/372 (40%), Positives = 234/372 (62%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIRIEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235

Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q  +   I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++
Sbjct: 236 VAQPEL--AIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  
Sbjct: 294 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI 353

Query: 360 IEKLIEKKVDWL 371
           IE L +K++  L
Sbjct: 354 IENLTKKRMKGL 365


>gi|212690559|ref|ZP_03298687.1| hypothetical protein BACDOR_00044 [Bacteroides dorei DSM 17855]
 gi|212666908|gb|EEB27480.1| hypothetical protein BACDOR_00044 [Bacteroides dorei DSM 17855]
          Length = 434

 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 154/364 (42%), Positives = 231/364 (63%), Gaps = 4/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY  PTPIQ + IP++L+  D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   + +  + LIL PTRELA Q+ +NF++Y K   +  A++ GG+P +AQ   L+
Sbjct: 61  QRLYQSDHK-KGIKALILTPTRELAIQIGENFDQYAKYTGVKHAVIFGGVPQKAQVDALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  VLI TPGR+LD  ++G + +  +E  V+DEADRMLDMGFI  I+ +  L+P  RQT
Sbjct: 120 RGVQVLIATPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++++ L NPK++EV   SST +TI+    + Y    K+   L   L 
Sbjct: 180 LFFSATMPSEIEKLADSMLTNPKKVEVTPVSSTVDTIQQ---SVYFVEKKEKKDLLLHLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +++ +IF   K     L   L K      AIHGN  Q +R + L+NFK+ T ++++
Sbjct: 237 KNPEIESVLIFTRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+++PN +E Y+HRIGRTGRAG  G A +    E++ ++  I
Sbjct: 297 ATDIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDI 356

Query: 361 EKLI 364
           +KLI
Sbjct: 357 QKLI 360


>gi|91772311|ref|YP_565003.1| DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM
           6242]
 gi|91711326|gb|ABE51253.1| DEAD-box RNA helicase [Methanococcoides burtonii DSM 6242]
          Length = 463

 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 152/371 (40%), Positives = 224/371 (60%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   +  A+ + GY  PTPIQ  +IP +L   D+ GIAQTGTGKTA+F+LP+L
Sbjct: 1   MSFDNLNLIFPLQRALTEEGYTSPTPIQELSIPHLLDNRDMIGIAQTGTGKTAAFILPIL 60

Query: 61  TILEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +     +A  + PR L+L PTRELAAQ+ ++F  YGK       ++ GG+    Q + 
Sbjct: 61  QNMSAIHKKATPKKPRVLVLAPTRELAAQIGESFATYGKYTRYKHTVVFGGVGQTPQVRA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D L+ TPGR+LD   +G + ++N+E  V+DEADRMLDMGF+  +  I  ++P  R
Sbjct: 121 LSRGVDCLVATPGRLLDLIQQGHIKLSNVEYFVLDEADRMLDMGFLNDVNKIVDMLPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM+ E+  ++   L NP ++EV   ++T E IE      +     K  LL  L
Sbjct: 181 QSLFFSATMSPEISTLARKMLSNPAQVEVTPQATTVERIEQFIF--FVDSDNKNELLLHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ +  +   ++F   K     +   L K   +  AIHG+  Q  R K L NFK G +++
Sbjct: 239 LRGEH-LDCVLVFTRTKHRANKVTEMLNKSNINAGAIHGSKSQTHRTKTLQNFKSGQLRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI D+ HV N+D+PN  E+Y+HRIGRT RAG  G A++  A ++   + 
Sbjct: 298 LVATDIAARGIDIEDISHVINYDLPNIPESYVHRIGRTARAGAEGTAYSFCAADERDFLR 357

Query: 359 AIEKLIEKKVD 369
            IEKL + +++
Sbjct: 358 DIEKLTDMEIE 368


>gi|290968757|ref|ZP_06560294.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781053|gb|EFD93644.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 520

 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 153/368 (41%), Positives = 231/368 (62%), Gaps = 8/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L +S  ++ A+   G+ +PTPIQ ++IP+ LQ  D+ G AQTGTGKTA+F +P+L  
Sbjct: 5   FQNLKISEVILQALNAMGFEEPTPIQAESIPVALQGADMIGQAQTGTGKTAAFGIPVLEK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + K     +  +T++L PTRELA QVA+      +   +    + GG   E Q ++L + 
Sbjct: 65  ILKNEP-TQSIQTVVLSPTRELAMQVAEELNHLAQCTTIQALPIYGGQDMERQLRRLRKH 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++DH  RG + +++I  +V+DEAD MLDMGFI  I  I S  P TRQTLL
Sbjct: 124 PQIIVATPGRLMDHMKRGTIDLSDIHTIVLDEADEMLDMGFIDDINTIMSATPDTRQTLL 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT--YAQYSKKCALLQQLLQ 240
           FSATM   +Q+++E FL  P+ I +     T + IE  ++ T    ++   C LL   LQ
Sbjct: 184 FSATMPKPIQQLAETFLHEPQIIRMKAKEVTMDLIEQSYIETPDRQKFDVLCRLLD--LQ 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D     IIF   K+ V  +  +L+K+G+S   IHG++ Q  R  ++  F+E TI ++V
Sbjct: 242 EPDL---AIIFVRTKRRVDEVAEALKKRGYSSEGIHGDLTQAKRDSVIRQFREKTIDILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HVFN+D+P   E+Y+HR+GRTGRAG+ G+A T V   +++H+ AI
Sbjct: 299 ATDVAARGLDISGVTHVFNYDLPQDPESYVHRVGRTGRAGKSGEATTFVIPREMEHLRAI 358

Query: 361 EKLIEKKV 368
           E+LI++ +
Sbjct: 359 ERLIKRHI 366


>gi|94498979|ref|ZP_01305517.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
 gi|94428611|gb|EAT13583.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
          Length = 457

 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 152/374 (40%), Positives = 224/374 (59%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L+  +V A+ + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MQFTDLALAEPIVKAIAEQGYTSPTPIQAQGIPAVLSGRDLLAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L      V+    R L+L PTRELAAQV DN   Y K   +   ++ GG+    Q ++
Sbjct: 61  QKLLDAPKGVKPNQARVLVLTPTRELAAQVQDNVATYSKYTKIRSEVVFGGVKINPQMQR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+LD  N+  +  + ++ L++DEADRMLDMGFI  I+ I  L+P  R
Sbjct: 121 LRRGVDILVATPGRLLDLHNQNAIHFDQLDTLILDEADRMLDMGFINDIRKIMRLLPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT +D+++ +++  ++NP  + V   ++TA+ +    +A      +K  LL  L
Sbjct: 181 QNLMFSATFSDKIRALAKTIVENPVEVSVTPKNTTAKKVRQSIIAV--DKKQKINLLIDL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +++     ++F   K     +   L        AIHGN  Q +R + L++FK   IQ+
Sbjct: 239 L-AKEKWHQVLVFSRTKHGANKIAKQLSDADIPAAAIHGNKSQGARTRALADFKSNDIQV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV NFD+PN AENY+HRIGRT RAG  G A + V+ ++I  + 
Sbjct: 298 LVATDIAARGIDIDQLPHVINFDLPNVAENYVHRIGRTARAGSDGDALSFVSIDEIDLLA 357

Query: 359 AIEKLIEKKVDWLN 372
            I+  I + ++ L+
Sbjct: 358 DIQNFIGEPIERLD 371


>gi|306825666|ref|ZP_07459005.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432027|gb|EFM35004.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 518

 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 149/371 (40%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS +++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFDLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP +RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPDSRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T + ++  ++    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTDLVDQYYIRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|71275478|ref|ZP_00651764.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Dixon]
 gi|71900655|ref|ZP_00682780.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|170729397|ref|YP_001774830.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
 gi|71163778|gb|EAO13494.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Dixon]
 gi|71729590|gb|EAO31696.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|167964190|gb|ACA11200.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
          Length = 446

 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 231/372 (62%), Gaps = 6/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LGL P ++ A+ + GY  PTPIQ + IPL L  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MNFETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVL 60

Query: 61  TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L    + V    PR L+L PTRELA QV D+   Y K   ++ A++ GG+    Q   
Sbjct: 61  QRLMAASSNVGAGKPRALVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLDV 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-T 177
           L RG D+LI  PGR++DH  R  + ++ + ILV+DEADRMLDMGF+  I+ I   +P   
Sbjct: 121 LRRGVDLLIACPGRLIDHIERRSVDLSGVGILVLDEADRMLDMGFLHSIKRILGKLPRQN 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT  + +++++  F+  P+ + V + ++ AETI H         S+K  LL  
Sbjct: 181 RQTLLFSATFAEPIKQLALEFMCRPREVMVASHNTVAETITHRVHPV--DVSRKRELLLY 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL +QD+ +  ++F   K     L   LEK G    AIHGN  Q  R++ L++FK G + 
Sbjct: 239 LL-AQDSREQTLVFVRTKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVT 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LV +ED K +
Sbjct: 298 VLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLL 357

Query: 358 DAIEKLIEKKVD 369
             I +L+++ +D
Sbjct: 358 RQIVRLLDRDMD 369


>gi|265754229|ref|ZP_06089418.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_33FAA]
 gi|263234938|gb|EEZ20493.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_33FAA]
          Length = 434

 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 154/364 (42%), Positives = 231/364 (63%), Gaps = 4/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY  PTPIQ + IP++L+  D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   + +  + LIL PTRELA Q+ +NF++Y K   +  A++ GG+P +AQ   L+
Sbjct: 61  QRLYQSDHK-KGIKALILTPTRELAIQIGENFDQYAKYTGVKHAVIFGGVPQKAQVDALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  VLI TPGR+LD  ++G + +  +E  V+DEADRMLDMGFI  I+ +  L+P  RQT
Sbjct: 120 RGVQVLIATPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++++ L NPK++EV   SST +TI+    + Y    K+   L   L 
Sbjct: 180 LFFSATMPSEIEKLADSMLTNPKKVEVTPVSSTVDTIQQ---SVYFVEKKEKKDLLLHLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +++ +IF   K     L   L K      AIHGN  Q +R + L+NFK+ T ++++
Sbjct: 237 KNPEIESVLIFTRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+++PN +E Y+HRIGRTGRAG  G A +    E++ ++  I
Sbjct: 297 ATDIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDI 356

Query: 361 EKLI 364
           +KLI
Sbjct: 357 QKLI 360


>gi|237725257|ref|ZP_04555738.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. D4]
 gi|229436523|gb|EEO46600.1| ATP-dependent RNA helicase DeaD [Bacteroides dorei 5_1_36/D4]
          Length = 434

 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 154/364 (42%), Positives = 231/364 (63%), Gaps = 4/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY  PTPIQ + IP++L+  D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   + +  + LIL PTRELA Q+ +NF++Y K   +  A++ GG+P +AQ   L+
Sbjct: 61  QRLYQSDHK-KGIKALILTPTRELAIQIGENFDQYAKYAGVKHAVIFGGVPQKAQVDALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  VLI TPGR+LD  ++G + +  +E  V+DEADRMLDMGFI  I+ +  L+P  RQT
Sbjct: 120 RGVQVLIATPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++++ L NPK++EV   SST +TI+    + Y    K+   L   L 
Sbjct: 180 LFFSATMPSEIEKLADSMLTNPKKVEVTPVSSTVDTIQQ---SVYFVEKKEKKDLLLHLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +++ +IF   K     L   L K      AIHGN  Q +R + L+NFK+ T ++++
Sbjct: 237 KNPEIESVLIFTRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+++PN +E Y+HRIGRTGRAG  G A +    E++ ++  I
Sbjct: 297 ATDIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDI 356

Query: 361 EKLI 364
           +KLI
Sbjct: 357 QKLI 360


>gi|89074254|ref|ZP_01160744.1| putative ATP-dependent RNA helicase, DEAD box family protein
           [Photobacterium sp. SKA34]
 gi|89049958|gb|EAR55492.1| putative ATP-dependent RNA helicase, DEAD box family protein
           [Photobacterium sp. SKA34]
          Length = 427

 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 160/389 (41%), Positives = 229/389 (58%), Gaps = 19/389 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L P ++ A+ D GY  PT +Q + IPL L+  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFQSLNLHPNLLKALTDLGYSTPTDVQQQAIPLALKGDDVMAGAQTGTGKTAAFTLPLL 60

Query: 61  --------------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                         T +E  +      R LIL PTRELA QV D+   Y K   + VA+ 
Sbjct: 61  QRLMTLPSQAEQVSTAVENNQKSRNKIRALILTPTRELAQQVFDSITTYAKYTEIKVAVA 120

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q K L  GA++L+ TPGR+LDH   G + ++ +E  V+DEADRMLDMGFI  
Sbjct: 121 YGGTSMNVQVKALNAGAEILVATPGRLLDHVFNGSVSLSEVETFVLDEADRMLDMGFIVD 180

Query: 167 IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
           IQ I   +P  RQTL FSAT + +++K++ + L NPK +EV   ++ AET+E        
Sbjct: 181 IQRIMKRMPAERQTLFFSATFSKQVKKLAFDILTNPKMVEVTPANTAAETVEQIVYPV-- 238

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              +K  LL  L+ S++  +  ++F   K+    L   L   G    +I+G+  Q +R +
Sbjct: 239 DKHRKAELLAYLIGSRN-WRQVLVFTKTKQGSDQLAKDLGLDGIKASSINGDKSQGARQR 297

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L +FK G  +++VA+D+AARGLDI  + +V NFD+P +AE+Y+HRIGRTGRAG  G A 
Sbjct: 298 ALDDFKSGKTRVLVATDVAARGLDIEQLEYVVNFDMPFKAEDYVHRIGRTGRAGMTGHAI 357

Query: 347 TLVAKEDIKHIDAIEKLIEKKV--DWLNG 373
           TL++ ++   + AIE+L++ ++   WL G
Sbjct: 358 TLMSLDEEWALKAIEELLDSRLPQQWLEG 386


>gi|83942539|ref|ZP_00955000.1| DEAD/DEAH box helicase [Sulfitobacter sp. EE-36]
 gi|83846632|gb|EAP84508.1| DEAD/DEAH box helicase [Sulfitobacter sp. EE-36]
          Length = 433

 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 158/389 (40%), Positives = 242/389 (62%), Gaps = 15/389 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  +GL  ++V A+ + G   PTPIQ + IP  +   DV G+AQTGTGKTA+F +P++ 
Sbjct: 3   DFEMMGLPRRLVKALTNMGMTDPTPIQKQAIPHGMNGRDVMGLAQTGTGKTAAFGIPLVA 62

Query: 62  -ILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +LE+  R   R  R L+L PTRELA Q+ +N + + +   L   +++GG     Q K++
Sbjct: 63  QMLEREARPEPRTVRGLVLAPTRELANQIMENLKGFCEGTQLKTMMIVGGQSINPQIKRM 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+L+ TPGR+LD  +R  +L++    LV+DEAD+MLDMGFI  ++ I +++P  RQ
Sbjct: 123 ERGVDLLVATPGRLLDLMDRRAVLLHKTTFLVLDEADQMLDMGFIHDLRKIAAVLPKERQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQ 237
           T+LFSATM   + +++ ++L +P RIEV+ P   A+ I  E  F+A     ++K +LL +
Sbjct: 183 TMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKITQEVHFIAK----AEKKSLLIE 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL  + T +  ++F   K     L   L K GF   +IHGN  Q  R + + +FK+G + 
Sbjct: 239 LL-GKHTEERALVFGRTKHGCEKLMKDLVKAGFKAASIHGNKSQGQRDRAIESFKKGEVT 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIPDV HV+N+++PN  +NY+HRIGRT RAG+ G A    A +++  +
Sbjct: 298 VLVATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGEL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
             I+K ++  +   +G       P E ID
Sbjct: 358 KDIQKTMKISIPVASGR------PWEAID 380


>gi|332072754|gb|EGI83235.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA17545]
          Length = 524

 Score =  296 bits (757), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 151/372 (40%), Positives = 234/372 (62%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235

Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q  +   I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++
Sbjct: 236 VAQPEL--AIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  
Sbjct: 294 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQI 353

Query: 360 IEKLIEKKVDWL 371
           IE L +K++  L
Sbjct: 354 IENLTKKRMKGL 365


>gi|254509500|ref|ZP_05121567.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221533211|gb|EEE36199.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 419

 Score =  296 bits (757), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 156/404 (38%), Positives = 241/404 (59%), Gaps = 8/404 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGL+P +  A+  A + +PTPIQ + IPL L  HD+ G+AQTGTGKT +F LP++ 
Sbjct: 3   DFDMLGLAPALNDALKRANFTQPTPIQNQAIPLALNGHDILGLAQTGTGKTLAFGLPLID 62

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L  + G+   +  + LIL PTREL  Q+AD+     K   L VA ++GG     Q   L
Sbjct: 63  HLLAQPGKPAPKTAKALILAPTRELVNQIADSLRGLTKKTKLRVATVVGGQSINKQIMFL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR++D   RG + ++++  LV+DEAD+MLDMGFI  ++ I   +   RQ
Sbjct: 123 SRGTDILVATPGRLIDLMERGAVDLSSVRHLVLDEADQMLDMGFIHALRRIAPELGTPRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  +++++S  +L NP+R++V+ P   A+ I       + +   K A L+++L
Sbjct: 183 TMLFSATMPKQMEELSRAYLTNPQRVQVSPPGKAADKITQSI--HFVEKPAKPAKLREIL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S D     ++F   K     L   L   G++  +IHGN  Q  R + +  F+ G I ++
Sbjct: 241 -SADMDALTLVFSRTKHGAEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRAGEINIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V +V N+D+P   +NY+HRIGRT RAGR G+A    + E++  +  
Sbjct: 300 VATDVAARGIDIPGVAYVINYDLPEVPDNYVHRIGRTARAGREGEAIAFCSAEEVDLLRQ 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           I+KL++ ++   +G++     P +    A+  + R+  P PQ S
Sbjct: 360 IQKLMKIEIPVASGEMPEAVAPKKP---ARRQNNRRRGPKPQHS 400


>gi|306829117|ref|ZP_07462307.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC
           6249]
 gi|304428203|gb|EFM31293.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC
           6249]
          Length = 525

 Score =  296 bits (757), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 149/371 (40%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +++IE L++DEAD ML+MGF+  I+ I S VP +RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEAIISRVPESRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + ++++   F++ P+ +++     T E ++  ++    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPEAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|295397627|ref|ZP_06807702.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
 gi|294974090|gb|EFG49842.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
          Length = 509

 Score =  296 bits (757), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 157/382 (41%), Positives = 236/382 (61%), Gaps = 16/382 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F ++ LS  ++ A+ + G+ + TPIQ +TIP+ L+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFNEMNLSKPLLRAIEEMGFEEATPIQAQTIPMALEGKDVFGQAQTGTGKTAAFGLPLL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + E G  +      LI+EPTRELA Q  +   + GK   +    + GG     Q K L
Sbjct: 61  EKVHETGGVQA-----LIIEPTRELAVQTGEELYRLGKFKGIHTTTVYGGASIGHQIKLL 115

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   V+I TPGRILD   RG L +NN+E LV+DEAD ML MGF+  I++I   +P  RQ
Sbjct: 116 KKNPPVVIGTPGRILDLIKRGVLKLNNVETLVLDEADEMLKMGFVEDIESIIRELPTERQ 175

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT+  E++++++NF+ +P  + V T   TA+ I+  +  +  +  +K  LL + +
Sbjct: 176 TLLFSATVPQEIKRIADNFMNDPATVHVKTKQMTADLIDQYY--SRCKDYEKFDLLTRFI 233

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  +  I+F   K+ V  +   L ++G+S   IHG++ Q  R+ +L NFK G + ++
Sbjct: 234 DVQNP-ELSIVFARTKRRVDEVARGLVERGYSAEGIHGDLSQDKRLGVLRNFKNGKLDIL 292

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  
Sbjct: 293 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKEGMSVTFVTSNEMSYLRT 352

Query: 360 IEKLIEKKVDWLNGDLSSLNPP 381
           IE L +K+       +S+L PP
Sbjct: 353 IEDLTKKQ-------MSALRPP 367


>gi|116333167|ref|YP_794694.1| superfamily II DNA/RNA helicase [Lactobacillus brevis ATCC 367]
 gi|116098514|gb|ABJ63663.1| Superfamily II DNA and RNA helicase [Lactobacillus brevis ATCC 367]
          Length = 523

 Score =  296 bits (757), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 145/365 (39%), Positives = 230/365 (63%), Gaps = 10/365 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS  ++ A+   GY + TPIQ +TIP+VL   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFKELGLSEDLLKAITSVGYEEATPIQAETIPMVLAGQDVIGQAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++K    V+    L++ PTRELA Q  +   K G+     V ++ GG     Q K L+
Sbjct: 61  EKIDKSNENVQ---ALVVSPTRELAIQTQEEIYKLGRTERANVQVVYGGADIRRQIKSLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V++ TPGR+LDH  R  L ++++++LV+DEAD ML+MGF+  I++I   +P  RQT
Sbjct: 118 NHPQVVVGTPGRLLDHIRRHTLKLDHVQMLVLDEADEMLNMGFLDDIEDIIKQLPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT--YAQYSKKCALLQQL 238
           +LFSATM  E+++V   F+++PK +++     T + I+  +V +  + ++          
Sbjct: 178 MLFSATMPPEIKRVGVQFMKDPKHVKIKAKELTTDLIDQFYVRSRDFEKFDVMTRFFD-- 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +QS D     I+F   K+ V  +   LE +G++   IHG++ Q+ R +I+++F+ G + +
Sbjct: 236 VQSPDLT---IVFTRTKRRVDEIASGLEARGYNAAGIHGDLTQKRRTQIMNDFRHGKLDI 292

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI DV HV+N+D+P   ++Y+HR+GRTGRAG+HG + T V   ++ ++ 
Sbjct: 293 LVATDVAARGIDINDVTHVYNYDIPQDPDSYVHRVGRTGRAGKHGVSMTFVTPNEMDYLR 352

Query: 359 AIEKL 363
            IEKL
Sbjct: 353 EIEKL 357


>gi|328945532|gb|EGG39683.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1087]
          Length = 523

 Score =  296 bits (757), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 150/371 (40%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ KTIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSTELLAEIEKAGFVEASPIQEKTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    + ++K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|74317119|ref|YP_314859.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
 gi|74056614|gb|AAZ97054.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 460

 Score =  296 bits (757), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 156/367 (42%), Positives = 233/367 (63%), Gaps = 9/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           FA+LGL+P ++ A+ + GYV PTPIQ + IP  LQ  D+ G AQTGTGKTA+F LP+   
Sbjct: 4   FAELGLAPDILRALDEMGYVSPTPIQAQVIPRALQGGDILGAAQTGTGKTAAFALPLIQR 63

Query: 60  -LTILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L       +  + P R LIL PTRELA QV +  + Y K+  L   ++ GG+    Q  
Sbjct: 64  LLPFANTSTSPAKHPIRALILTPTRELAIQVEEAIQAYTKHVPLRSLVVYGGVNINTQIP 123

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G ++L+ TPGR+LDH     L++  +  LV+DEADRMLDMGF+P ++ I +L+P  
Sbjct: 124 ILKTGVEILVATPGRLLDHVQNKTLMLTQVNTLVLDEADRMLDMGFMPDLRRIVALLPAQ 183

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R  ++FSAT  +E++K++++ L  P  IEV   + TA T+    V     + +K  LL  
Sbjct: 184 RVNMMFSATFPEEIRKLADSILSTPTFIEVAR-NETAVTVTQ--VVHPVHHERKRQLLAH 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++S+D ++  ++F   K     L + L K G    AIHG+  Q+ R+K L  FK GTI+
Sbjct: 241 LIKSRD-LRQVLVFTGTKLGCNRLANELNKAGIHADAIHGDKTQQERIKALDAFKAGTIR 299

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  +  V N+D+P+ AE+Y+HRIGRTGRAG  G+A +LV++ + +++
Sbjct: 300 VLVATDVAARGIDIEALPFVVNYDLPHNAEDYVHRIGRTGRAGAKGEAISLVSEAETRYL 359

Query: 358 DAIEKLI 364
             IE+LI
Sbjct: 360 KDIERLI 366


>gi|283769405|ref|ZP_06342304.1| putative ATP-dependent RNA helicase RhlE [Bulleidia extructa W1219]
 gi|283104062|gb|EFC05446.1| putative ATP-dependent RNA helicase RhlE [Bulleidia extructa W1219]
          Length = 425

 Score =  295 bits (756), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 167/417 (40%), Positives = 249/417 (59%), Gaps = 19/417 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   ++ ++  A Y KP+PIQ K IP++L+  D+   AQTGTGKTA+F LP+L
Sbjct: 1   MTFNEFNLRKPLLDSLAKASYKKPSPIQEKGIPILLEGSDLIACAQTGTGKTATFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K +      R LIL PTRELA Q+ +N + +G+  +L    + GG P   Q K + 
Sbjct: 61  NSLSKEKNH--SIRALILTPTRELATQIFENIKMFGRYMHLRACCVYGGSPAAPQLKAIR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+LI TPGR+LD+   GK+ + +IE LV+DEADRMLDMGFI  ++ I   +P  R T
Sbjct: 119 SGCDILIATPGRLLDYLAHGKISLRHIEFLVLDEADRMLDMGFIADVRKIVQQIPNDRIT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+Q+++ + L+NPK + +     TA TI+   +  Y + S K  +L  LL 
Sbjct: 179 ALFSATMPKEIQELARDILKNPKEVRIEAEKFTASTIDQYLI--YTEKSSKKKVLVNLLN 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +++K  I+F   K     L   L+++  +   IHG+  Q  R+  L  F+   I++++
Sbjct: 237 T-ESIKKTIVFTRTKIGADRLEKYLKEKEIACLVIHGDKTQGQRLNALQRFRTNQIRILI 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV NFD+P   ENY+HRIGRTGRA + G + +LV KE++  +  I
Sbjct: 296 ATDVAARGIDIKDISHVINFDLPEDIENYVHRIGRTGRAKQEGVSISLVCKEELNLLANI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           E  I+ ++  L  +L SL  PLE+         +K      K+T   R+K+ +S+QK
Sbjct: 356 ESYIQFQIP-LKQNLYSL--PLER--------KKKRKSSIHKTT---RKKERFSNQK 398


>gi|89890308|ref|ZP_01201818.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
 gi|89517223|gb|EAS19880.1| ATP-dependent RNA  helicase [Flavobacteria bacterium BBFL7]
          Length = 425

 Score =  295 bits (756), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 156/373 (41%), Positives = 234/373 (62%), Gaps = 11/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ A+ D GY  PTPIQ ++IP++L+  D+ G+AQTGTGKTA+F +P+L
Sbjct: 1   MTFKELGLVEPILRALQDQGYENPTPIQAQSIPVLLKGKDLLGVAQTGTGKTAAFSIPIL 60

Query: 61  TIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L      KGR   R  + L++ PTRELA Q+ +NF+ Y K  ++   ++ GG+    Q
Sbjct: 61  QHLYNSAPPKGR---RSIKALVVTPTRELAIQIDENFKAYAKYTDIRNTVIYGGVKQAQQ 117

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L+ G DVL+ TPGR+LD  N+G + + +IE  V+DEAD+MLDMGFI  I+ +  L+P
Sbjct: 118 VNRLKSGIDVLVATPGRLLDLINQGFITLKHIEYFVLDEADQMLDMGFIHDIKKLLKLLP 177

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ+L FSATM   + ++S   L + +R+ +    +TAE +E      +     K  LL
Sbjct: 178 HERQSLFFSATMPKTIVELSRQILGDFERVTIAPEKTTAEKVEQQIY--HVNKKNKTKLL 235

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +LL+++  + + ++F   K     +   LEK G    AIHGN  Q +R + L  FKEG 
Sbjct: 236 IELLETK-LLDSTLVFSRTKHGANKIVKDLEKAGIGSAAIHGNKSQAARQRALGAFKEGK 294

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           IQ +VA+D+AARG+DI ++ +V N+D+PN AE+Y+HRIGRTGRAG  G A +    E+  
Sbjct: 295 IQTLVATDIAARGIDIDELSYVVNYDLPNVAESYVHRIGRTGRAGASGLAVSFCMLEERP 354

Query: 356 HIDAIEKLIEKKV 368
            +  IEKLI++++
Sbjct: 355 FLKDIEKLIKQQI 367


>gi|254372784|ref|ZP_04988273.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570511|gb|EDN36165.1| ATP-dependent RNA helicase RhlE [Francisella novicida GA99-3549]
          Length = 442

 Score =  295 bits (756), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 152/365 (41%), Positives = 234/365 (64%), Gaps = 4/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+  +  A+   GY KPTPIQ + IP+VL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MKFSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  +  +++   V+DEADRMLDMGFI  ++ I  L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQSAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++  FL NP+ +  +  ++T + I    + T  + +K  AL+  L+
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQK-IYTLDKSNKINALI-SLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+ +   ++F   K     +   L   G S  AIHGN  Q +R K L++FK   I ++
Sbjct: 239 KDQN-LHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+PN AE+Y+HRIGRTGRAG+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357

Query: 360 IEKLI 364
           IE LI
Sbjct: 358 IEHLI 362


>gi|253575100|ref|ZP_04852439.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845556|gb|EES73565.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 410

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 156/371 (42%), Positives = 230/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L P ++ A+    Y  PTPIQ + IP +L   D+ G AQTGTGKTA+F +P L
Sbjct: 1   MQFKELNLIPSILKALEQENYTAPTPIQQQAIPPILSGQDLLGCAQTGTGKTAAFAIPTL 60

Query: 61  TILEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L K    RA  R  R L++ PTRELA Q+ +NF  YGK   L  A++ GG+  + Q  
Sbjct: 61  QLLHKDGAPRAGRRNIRALVITPTRELALQIYENFCAYGKYLPLKCAVIFGGVSQKPQEA 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+L+ TPGR+ D   +  + + N+E+L++DEADRMLDMGFI  ++ I +  P  
Sbjct: 121 ALQKGVDILVATPGRLNDLMQQKLIDLKNVELLILDEADRMLDMGFIHDVKKIIAKTPSQ 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM D + +++++ L+NP ++E+   SST +TI       Y     K  LL  
Sbjct: 181 RQTLLFSATMPDAIAQMADSILRNPVKVEITPVSSTVDTIGQYLY--YVDKGNKRDLLIH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+   ++++ I+F   K     L   L K   S  AIHG+  Q +R   L +FK  T++
Sbjct: 239 LLKD-PSIESAIVFTRTKHGADRLVRHLTKAQVSAKAIHGDKSQGARQTALQDFKNRTLR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++ HV N+++PN  E Y+HRIGRTGRAG+ G A +    ++  ++
Sbjct: 298 VLVATDIAARGIDIDELSHVINYELPNIPETYVHRIGRTGRAGQSGVAISFCDFDEKPYL 357

Query: 358 DAIEKLIEKKV 368
             IEKLI K++
Sbjct: 358 ADIEKLIGKRI 368


>gi|227550862|ref|ZP_03980911.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
           TX1330]
 gi|257887886|ref|ZP_05667539.1| helicase [Enterococcus faecium 1,141,733]
 gi|257893315|ref|ZP_05672968.1| helicase [Enterococcus faecium 1,231,408]
 gi|293379275|ref|ZP_06625421.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
 gi|227179960|gb|EEI60932.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
           TX1330]
 gi|257823940|gb|EEV50872.1| helicase [Enterococcus faecium 1,141,733]
 gi|257829694|gb|EEV56301.1| helicase [Enterococcus faecium 1,231,408]
 gi|292642071|gb|EFF60235.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
          Length = 503

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 155/384 (40%), Positives = 237/384 (61%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LSP+++ +V  AG+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKELELSPELLKSVERAGFEEATPIQAETIPLALVGKDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R  ++    L++ PTRELA Q  +   + G++  + V  + GG     Q + L+
Sbjct: 61  EKIDPDRHELQ---GLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  ++ LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F+++P  +++     TA+ I+  +V   A+  +K  ++ +L  
Sbjct: 178 LLFSATMPPAIKNIGVKFMKSPHHVKIKAKEMTADLIDQYYVR--AKEYEKFDIMTRLFD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 236 VQ-TPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       +++L PP EK
Sbjct: 355 ENLTKKR-------MTTLRPPTEK 371


>gi|148359886|ref|YP_001251093.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
 gi|296107936|ref|YP_003619637.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99
           Alcoy]
 gi|148281659|gb|ABQ55747.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
 gi|295649838|gb|ADG25685.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99
           Alcoy]
          Length = 589

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 151/369 (40%), Positives = 232/369 (62%), Gaps = 7/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+    S  +  A+ D  ++ P+PIQ +TIPL+LQ  D   +AQTGTGKTA+F LP+L 
Sbjct: 7   NFSTFNFSSALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120
            L      +   + LIL PTRELA QVA+ FE   K   N+T+A+L GG  +  Q K+L 
Sbjct: 67  NLS---PEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGRILDH ++G LL+NN++  ++DEAD ML MGFI  ++ I   +P  +Q 
Sbjct: 124 SGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQM 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   +++++  +L +P  IE+   ++T ++IE  F+  +A   +K   L ++L+
Sbjct: 184 ALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFL--FASVHQKPDALIRVLE 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D  +  I+F   K +   +   L++ G    AIHG+I Q  R +I++ FK+G I ++V
Sbjct: 242 VED-YQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV N+D+P+  E Y+HRIGRTGRAGR G     V  ++ + I +I
Sbjct: 301 ATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSI 360

Query: 361 EKLIEKKVD 369
           E+   ++++
Sbjct: 361 ERHTRQRIE 369


>gi|261408394|ref|YP_003244635.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|329929405|ref|ZP_08283153.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
 gi|261284857|gb|ACX66828.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
 gi|328936492|gb|EGG32937.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
          Length = 533

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 148/367 (40%), Positives = 232/367 (63%), Gaps = 6/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FAD GL P+V+ A+ + G+ + TPIQ ++IP+ L   D+ G AQTGTGKTA+F LP++ 
Sbjct: 3   NFADFGLEPRVLQAITELGFEEATPIQSQSIPIALTGKDMIGQAQTGTGKTAAFGLPLIH 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + K   R+     LI+ PTRELA QVA+   K  +   +    + GG     Q + L+R
Sbjct: 63  KIAKEEERIV---ALIMTPTRELAIQVAEEIGKLSRFKGIRSLAIYGGQDIGRQIRALKR 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH NR  + +++++ +V+DEAD MLDMGF+  IQ+I  LVP  RQTL
Sbjct: 120 KPQIIIGTPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDIQSILKLVPEERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +QK++  FL+ P+ + V     +A  I+  ++    +  +K   L +LL  
Sbjct: 180 LFSATMPANIQKLASQFLKEPEHVSVIPKHVSAPLIDQAYIEVPER--QKFEALSRLL-D 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            ++ +  I+F   K+ V  L  +L+K+G+S   +HG++ Q  R  ++  F++G+I ++VA
Sbjct: 237 MESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HV NFD+P   E+Y+HRIGRTGRAG+ G A++ V   ++ H+  IE
Sbjct: 297 TDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLYFIE 356

Query: 362 KLIEKKV 368
           ++   ++
Sbjct: 357 RVTRHRI 363


>gi|239825779|ref|YP_002948403.1| DEAD/DEAH box helicase [Geobacillus sp. WCH70]
 gi|239806072|gb|ACS23137.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. WCH70]
          Length = 466

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 155/369 (42%), Positives = 233/369 (63%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS +++ A+   G+ + TPIQ +TIPL LQ  DV G AQTGTGKTA+F +P++  
Sbjct: 4   FHELGLSNELMKAIRRMGFEETTPIQAETIPLSLQNKDVIGQAQTGTGKTAAFGIPLI-- 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            EK   +    + L++ PTRELA QV++   K G    + V  + GG   E Q + L++ 
Sbjct: 62  -EKVDVKNEAIQGLVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKR 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRI+DH NR  L ++N+  +V+DEAD ML+MGFI  I+ I S VP  RQTLL
Sbjct: 121 PHIIVGTPGRIIDHINRKTLRLDNVHTVVLDEADEMLNMGFIDDIEAILSNVPEKRQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + +++++E F+  P  ++V     T   I+  ++    Q  KK  +L +LL  Q
Sbjct: 181 FSATMPEPIRRIAERFMNEPHIVKVKAKEMTVPNIQQYYLE--VQEKKKFDILTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+F   K+ V  L  +L  +G++   IHG++ Q  R+ +L  FKEG+I+++VA+
Sbjct: 239 -APELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   +I  +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHNIER 357

Query: 363 LIEKKVDWL 371
             ++K++ +
Sbjct: 358 TTKRKMERM 366


>gi|149177361|ref|ZP_01855966.1| ATP-dependent RNA helicase DeaD [Planctomyces maris DSM 8797]
 gi|148843886|gb|EDL58244.1| ATP-dependent RNA helicase DeaD [Planctomyces maris DSM 8797]
          Length = 606

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 152/378 (40%), Positives = 238/378 (62%), Gaps = 9/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L   ++  +++ GY  PTPIQ +TIP +L+  D+ G AQTGTGKTA+F LP+L+ 
Sbjct: 11  FTDLELCQPILDVLVELGYDTPTPIQAQTIPHLLEGRDLVGQAQTGTGKTAAFALPLLSK 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     +R P+ L+L PTRELA QV ++F++YG     L V  + GG  F+ Q + L+R
Sbjct: 71  ID---LELRAPQVLVLAPTRELAIQVGESFKEYGSQLKGLQVLPIYGGADFKGQLQPLKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L ++N+  LV+DEAD ML MGFI  ++ I    P   QT 
Sbjct: 128 GVHVVVGTPGRVMDHMRRGTLKLDNLRCLVLDEADEMLRMGFIDDVEWILEQTPDNHQTA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++ N+L++P+ I V   + TA+TI   +    A+   K   L ++L++
Sbjct: 188 LFSATMPEAIRRIAGNYLKSPQEITVKDKTRTADTIRQRYW--LAKGHHKLDALTRILEA 245

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++T    IIF   K     L   LE +GF    ++G+I Q+ R + +   K G + +++A
Sbjct: 246 EET-DGVIIFVRTKSITTELSEKLEARGFLAAPLNGDIPQKQRERTVGRLKAGHVNIVIA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P  +E Y+HRIGRTGRAGR G+A   V+  + + +  IE
Sbjct: 305 TDVAARGLDVDRISHVINYDLPGDSEAYVHRIGRTGRAGRTGEAIMFVSPREQRSLSGIE 364

Query: 362 KLIEKKVDWLNGDLSSLN 379
           + I+ K++ +  +L S+N
Sbjct: 365 RAIKLKIERM--ELPSIN 380


>gi|125623238|ref|YP_001031721.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492046|emb|CAL96974.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300069989|gb|ADJ59389.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 551

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 156/381 (40%), Positives = 236/381 (61%), Gaps = 13/381 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  +V  + + GY +PTPIQ +TI L L+  DV G AQTGTGKTA+F LP  
Sbjct: 1   MKFSELGLSEGIVKTLTEIGYEQPTPIQEETIKLALEGRDVLGQAQTGTGKTAAFGLP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +EK  A     + L++ PTRELA Q  +   ++GK+  L V  + GG   E Q K L+
Sbjct: 59  -TIEKINAENPAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIKGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR++D   R  + ++ +E L++DEAD ML+MGF+  I  I    P  RQT
Sbjct: 118 AGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  +++K+   F++NP+ I++     TA+ I+  FV T  +  +K  +L +LL 
Sbjct: 178 LLFSATMPADIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKT--KEFEKFDVLTRLLD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +G+    +HG++DQ  R+ +L +FK G I ++V
Sbjct: 236 VERP-ELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++ AI
Sbjct: 295 ATDVAARGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPP 381
           EKL        N ++  L PP
Sbjct: 355 EKLT-------NKEMKGLKPP 368


>gi|290580897|ref|YP_003485289.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025]
 gi|254997796|dbj|BAH88397.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025]
          Length = 517

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 148/371 (39%), Positives = 236/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  ++ AV   G+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  NKIDVINNVVQ---ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N++E L++DEAD ML+MGF+  I+ I S VP TRQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T + ++  ++    + ++K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIVAKELTTDLVDQYYI--RVKENEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +G+    IHG++DQ  R+++L +FK   + ++V
Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+HG++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           EKL +K++  +
Sbjct: 355 EKLTKKRMKGM 365


>gi|307611190|emb|CBX00835.1| hypothetical protein LPW_25391 [Legionella pneumophila 130b]
          Length = 589

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 151/369 (40%), Positives = 232/369 (62%), Gaps = 7/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+    S  +  A+ D  ++ P+PIQ +TIPL+LQ  D   +AQTGTGKTA+F LP+L 
Sbjct: 7   NFSTFNFSSALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120
            L      +   + LIL PTRELA QVA+ FE   K   N+T+A+L GG  +  Q K+L 
Sbjct: 67  NLS---PEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGRILDH ++G LL+NN++  ++DEAD ML MGFI  ++ I   +P  +Q 
Sbjct: 124 SGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQM 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   +++++  +L +P  IE+   ++T ++IE  F+  +A   +K   L ++L+
Sbjct: 184 ALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFL--FASVHQKPDALIRVLE 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D  +  I+F   K +   +   L++ G    AIHG+I Q  R +I++ FK+G I ++V
Sbjct: 242 VED-YQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV N+D+P+  E Y+HRIGRTGRAGR G     V  ++ + I +I
Sbjct: 301 ATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSI 360

Query: 361 EKLIEKKVD 369
           E+   ++++
Sbjct: 361 ERHTRQRIE 369


>gi|284044842|ref|YP_003395182.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
 gi|283949063|gb|ADB51807.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
           14684]
          Length = 590

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 156/394 (39%), Positives = 236/394 (59%), Gaps = 15/394 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L  +++ A+   GY +PTPIQ + IP +L+  D+ G A TGTGKTA+F LP+L  
Sbjct: 17  FADLALRRELLDALTGLGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAAFALPILQR 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E GR+ +  P  L+L PTRELA QV++   +YG++    V  + GG P   Q   L+RG
Sbjct: 77  MEPGRSAI-GPLALVLVPTRELAVQVSEALHRYGRSLGARVLPIYGGQPIGRQLNALKRG 135

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQTL 181
            DV++ TPGR+LDH +R  L ++ + I+V+DEAD MLDMGF   I++I +  P   RQT+
Sbjct: 136 VDVVVGTPGRVLDHISRNTLRLDELRIVVLDEADEMLDMGFAEDIESILAETPDGGRQTV 195

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   + +++   L +P RIE+   +S  +T      A     + K A L ++L  
Sbjct: 196 LFSATMPPRIDRIARAHLSDPVRIEIARETSAGDTPLVRQSAYVVARAHKPAALGRVLDV 255

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + +    I+FC  +  V  L  +L  +G+   A+HG + Q  R ++++  + GT  L+VA
Sbjct: 256 E-SPTAAIVFCRTRDEVDQLTETLNGRGYRAEALHGGMTQEQRDRVMARLRNGTADLLVA 314

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+DVP+  E+Y+HRIGR GRAGR G A TL    + +++  IE
Sbjct: 315 TDVAARGLDVEQLTHVVNYDVPSSPESYVHRIGRVGRAGREGAAITLAEPREHRYLKTIE 374

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           ++ ++++             +EKI      HARK
Sbjct: 375 RVTKQRI------------AIEKIPTVADLHARK 396


>gi|77413593|ref|ZP_00789780.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 515]
 gi|77160359|gb|EAO71483.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 515]
          Length = 528

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 152/371 (40%), Positives = 233/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ AV  AG+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      ++    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L 
Sbjct: 61  NKIHTEDNTIQ---ALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGR+LD   R  L +N+IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPEARQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++NP+ +++     T   ++  +V    + ++K   + +L+ 
Sbjct: 178 LLFSATMPDPIKRIGVKFMKNPEHVKIKATELTNVNVDQYYV--RVKENEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLTII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  +
Sbjct: 355 ENLTKKRMTGM 365


>gi|241895833|ref|ZP_04783129.1| DEAD box ATP-dependent RNA helicase SrmB [Weissella
           paramesenteroides ATCC 33313]
 gi|241870876|gb|EER74627.1| DEAD box ATP-dependent RNA helicase SrmB [Weissella
           paramesenteroides ATCC 33313]
          Length = 512

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 151/371 (40%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+  ++ A+   GYV+ TPIQ KTIPL +   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLTQDLLTAIEKHGYVEATPIQEKTIPLTMAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++     V+    L++ PTRELA Q  D   K G++ ++ V  + GG     Q   L 
Sbjct: 61  EMIDNENKDVQ---ALVVSPTRELAIQTQDELFKLGRDKHVRVQAVFGGADIRRQINGLN 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR++DH  RG + +++++ LV+DEAD ML+MGF+  I++I   VP  RQT
Sbjct: 118 HGAHIVVGTPGRLIDHIRRGTINLSHVKTLVLDEADEMLNMGFLEDIESILKAVPDERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+ NP+ I++     T + ++  +V    +  +K  +L ++L 
Sbjct: 178 LLFSATMPPAIKRIGVQFMTNPEHIQIAAKELTTDLVDQYYV--RVRDFEKFDVLTRILD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   +  I+F   K+ V  L   L  +GF    IHG++ Q+ R ++L  FK   I+++V
Sbjct: 236 VQQP-ELAIMFGRTKRRVDELTRGLTLRGFKAAGIHGDLTQQKRTQVLKQFKNREIKILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V +V+NFD+P  +E+Y+HRIGRTGRAG HG + T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTYVYNFDIPQDSESYVHRIGRTGRAGAHGNSVTFVSNSEMDYLKDI 354

Query: 361 EKLIEKKVDWL 371
           EKL +K++  L
Sbjct: 355 EKLTKKRMQPL 365


>gi|208779218|ref|ZP_03246564.1| dead/deah box helicase domain protein [Francisella novicida FTG]
 gi|208745018|gb|EDZ91316.1| dead/deah box helicase domain protein [Francisella novicida FTG]
          Length = 441

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 152/365 (41%), Positives = 234/365 (64%), Gaps = 4/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+  +  A+   GY KPTPIQ + IP+VL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MKFSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  +  +++   V+DEADRMLDMGFI  ++ I  L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++  FL NP+ +  +  ++T + I    + T  + +K  AL+  L+
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQK-IYTLDKSNKINALI-SLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+ +   ++F   K     +   L   G S  AIHGN  Q +R K L++FK   I ++
Sbjct: 239 KDQN-LHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+PN AE+Y+HRIGRTGRAG+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357

Query: 360 IEKLI 364
           IE LI
Sbjct: 358 IEHLI 362


>gi|21957415|gb|AAM84284.1|AE013672_2 inducible ATP-independent RNA helicase [Yersinia pestis KIM 10]
 gi|45435306|gb|AAS60865.1| inducible ATP-independent RNA helicase [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 669

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 151/379 (39%), Positives = 238/379 (62%), Gaps = 9/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  ++ A+ D GY KP+PIQ++ IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 14  FADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHN 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           +   +A ++ P+ L+L PTRELA QVA+    + K+ N + V  L GG  ++ Q + L +
Sbjct: 74  I---KADLKSPQVLVLAPTRELAVQVAEALSSFSKHINGVNVVALYGGQRYDVQLRALRQ 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 131 GPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTA 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +      Y K  AL+ + L++
Sbjct: 191 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWRVGGGYRKNEALV-RFLEA 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 250 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  IE
Sbjct: 309 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNIE 368

Query: 362 ---KLIEKKVDWLNGDLSS 377
              KL   +V+  N DL S
Sbjct: 369 RTMKLTIPEVELPNADLLS 387


>gi|116511209|ref|YP_808425.1| superfamily II DNA/RNA helicase [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116106863|gb|ABJ72003.1| Superfamily II DNA and RNA helicase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 551

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 156/381 (40%), Positives = 236/381 (61%), Gaps = 13/381 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  +V  + + GY +PTPIQ +TI L L+  DV G AQTGTGKTA+F LP  
Sbjct: 1   MKFSELGLSEGIVKTLTEIGYEQPTPIQEETIKLALEGRDVLGQAQTGTGKTAAFGLP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +EK  A     + L++ PTRELA Q  +   ++GK+  L V  + GG   E Q K L+
Sbjct: 59  -TIEKINAENPAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIKGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR++D   R  + ++ +E L++DEAD ML+MGF+  I  I    P  RQT
Sbjct: 118 AGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  +++K+   F++NP+ I++     TA+ I+  FV T  +  +K  +L +LL 
Sbjct: 178 LLFSATMPADIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKT--KEFEKFDVLTRLLD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +G+    +HG++DQ  R+ +L +FK G I ++V
Sbjct: 236 VERP-QLAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++ AI
Sbjct: 295 ATDVAARGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPP 381
           EKL        N ++  L PP
Sbjct: 355 EKLT-------NKEMKGLKPP 368


>gi|148984940|ref|ZP_01818193.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP3-BS71]
 gi|307127794|ref|YP_003879825.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
 gi|147922962|gb|EDK74078.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP3-BS71]
 gi|301800413|emb|CBW33045.1| DEAD box helicase family protein [Streptococcus pneumoniae OXC141]
 gi|306484856|gb|ADM91725.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
          Length = 524

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 151/372 (40%), Positives = 234/372 (62%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235

Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q  +   I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++
Sbjct: 236 VAQPEL--AIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  
Sbjct: 294 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQI 353

Query: 360 IEKLIEKKVDWL 371
           IE L +K++  L
Sbjct: 354 IENLTKKRMKGL 365


>gi|114567412|ref|YP_754566.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338347|gb|ABI69195.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 530

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 149/368 (40%), Positives = 229/368 (62%), Gaps = 7/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  +GL   ++  + + G+ KPTPIQ+K+IP+ +   D+ G AQTGTGKTASF +P+L 
Sbjct: 5   NFYSMGLKTDLLQMIDEKGFEKPTPIQVKSIPIAMAGLDLMGQAQTGTGKTASFGIPILN 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + KG       + L+L PTRELA QV +      +   + V  + GG   E Q + L R
Sbjct: 65  RVIKGEGL----QALVLCPTRELAVQVTEEISSLSRRMRIQVLAIYGGQSIELQLRSLRR 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             ++++ TPGR++DH NRG + ++ ++ +V+DEAD MLDMGF+P IQ I S  P  RQT 
Sbjct: 121 NPEIIVGTPGRLMDHMNRGTISLSPLKYVVLDEADEMLDMGFLPDIQKILSQCPRERQTF 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ DE++++   F++ P+ I + +P  T   IE  +    ++  +K   L +++ +
Sbjct: 181 LFSATLPDEVRELGTKFMKQPEIILIESPERTVPEIEQYYYQVNSR--RKIETLCRIIDA 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q      +IFC  K+N   L   L  +G++  A+HG++ QR R  ++  F++G  +++VA
Sbjct: 239 QQP-PISLIFCRTKRNADELARVLTSRGYNADALHGDMSQRERDHVMHGFRQGNTKILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARGLDI  V HVFNFD+P   ++YIHR+GRTGRAGR G A TLV    I+ +  IE
Sbjct: 298 TDLAARGLDIELVTHVFNFDIPEDLDSYIHRVGRTGRAGRSGIAITLVEPTQIRLLRMIE 357

Query: 362 KLIEKKVD 369
           +   K+++
Sbjct: 358 RHTGKRIE 365


>gi|331696881|ref|YP_004333120.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951570|gb|AEA25267.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 659

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 152/366 (41%), Positives = 218/366 (59%), Gaps = 8/366 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+P++  A+ + GY +P+PIQ + IP ++   D+ G A TGTGKTA+F LPML  
Sbjct: 92  FADLGLAPELQRALDELGYERPSPIQAEAIPSLIDGRDLIGQAATGTGKTAAFALPMLQR 151

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L + R  +R   P  L+L PTRELA QV +   +YGK     V  + GG P   Q   L+
Sbjct: 152 LAQERRGSRGTAPLGLVLAPTRELAMQVTEAIARYGKGLRARVLAVYGGAPIGPQLGALK 211

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR +D  NRG L ++ +E++V+DEAD MLDMGF+  I+ I    P TRQ 
Sbjct: 212 RGVDVVVATPGRAIDLINRGALSLDELEVVVLDEADEMLDMGFVEDIETILQATPDTRQA 271

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +LFSATM   ++ ++  +L +P  + +     P   A  +     A     S   A L +
Sbjct: 272 VLFSATMPRRIEVLARTYLTDPVLVRIQREEVPEGEAPRVRQT--AYMVPRSHTTAALGR 329

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+ +      I+FC  + +V  +  +L  +G    A+HG +DQ  R +++   + G   
Sbjct: 330 ILELERPTA-AIVFCRTRADVDAVTEALTGRGLRAEALHGGMDQEHRTRVVDRLRNGRTD 388

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+D+AARGLDI  + HV N DVP   E+Y+HRIGR GRAGR G A TLVA   ++H+
Sbjct: 389 LLVATDVAARGLDIDQLTHVVNHDVPKSPESYVHRIGRVGRAGREGVAITLVAPASVRHL 448

Query: 358 DAIEKL 363
             IE+L
Sbjct: 449 RNIERL 454


>gi|22536941|ref|NP_687792.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae
           2603V/R]
 gi|22533794|gb|AAM99664.1|AE014227_8 ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 2603V/R]
          Length = 528

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 152/371 (40%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ AV  AG+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      ++    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L 
Sbjct: 61  NKIHTEDNTIQ---ALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGR+LD   R  L +N+IE L++DEAD ML+MGF+  I+ I S VP TRQT
Sbjct: 118 SGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T   ++  +V    + ++K   + +L+ 
Sbjct: 178 LLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYV--RVKENEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLTII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  +
Sbjct: 355 ENLTKKRMTGM 365


>gi|54295187|ref|YP_127602.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens]
 gi|53755019|emb|CAH16507.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens]
          Length = 589

 Score =  295 bits (756), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 151/369 (40%), Positives = 232/369 (62%), Gaps = 7/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+    S  +  A+ D  ++ P+PIQ +TIPL+LQ  D   +AQTGTGKTA+F LP+L 
Sbjct: 7   NFSTFNFSSALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120
            L      +   + LIL PTRELA QVA+ FE   K   N+T+A+L GG  +  Q K+L 
Sbjct: 67  NLS---PEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGRILDH ++G LL+NN++  ++DEAD ML MGFI  ++ I   +P  +Q 
Sbjct: 124 SGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQM 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   +++++  +L +P  IE+   ++T ++IE  F+  +A   +K   L ++L+
Sbjct: 184 ALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFL--FASVHQKPDALIRVLE 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D  +  I+F   K +   +   L++ G    AIHG+I Q  R +I++ FK+G I ++V
Sbjct: 242 VED-YQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV N+D+P+  E Y+HRIGRTGRAGR G     V  ++ + I +I
Sbjct: 301 ATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSI 360

Query: 361 EKLIEKKVD 369
           E+   ++++
Sbjct: 361 ERHTRQRIE 369


>gi|51594838|ref|YP_069029.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis IP
           32953]
 gi|108808981|ref|YP_652897.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Antiqua]
 gi|108810764|ref|YP_646531.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Nepal516]
 gi|145600551|ref|YP_001164627.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Pestoides F]
 gi|153947592|ref|YP_001402544.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis IP
           31758]
 gi|153997472|ref|ZP_02022572.1| cold-shock dead-box protein A [Yersinia pestis CA88-4125]
 gi|161484874|ref|NP_668033.2| ATP-dependent RNA helicase DeaD [Yersinia pestis KIM 10]
 gi|161511438|ref|NP_991988.2| ATP-dependent RNA helicase DeaD [Yersinia pestis biovar Microtus
           str. 91001]
 gi|162420533|ref|YP_001608294.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Angola]
 gi|165925696|ref|ZP_02221528.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165936744|ref|ZP_02225311.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166010049|ref|ZP_02230947.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166214269|ref|ZP_02240304.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167398750|ref|ZP_02304274.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167420623|ref|ZP_02312376.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167423076|ref|ZP_02314829.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|186893847|ref|YP_001870959.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis PB1/+]
 gi|218930502|ref|YP_002348377.1| ATP-dependent RNA helicase DeaD [Yersinia pestis CO92]
 gi|229839140|ref|ZP_04459299.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229896629|ref|ZP_04511796.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|229899704|ref|ZP_04514845.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229900962|ref|ZP_04516086.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|270489144|ref|ZP_06206218.1| ATP-dependent RNA helicase DeaD [Yersinia pestis KIM D27]
 gi|294505188|ref|YP_003569250.1| cold-shock dead-box protein A [Yersinia pestis Z176003]
 gi|51588120|emb|CAH19726.1| cold-shock dead-box protein A [Yersinia pseudotuberculosis IP
           32953]
 gi|108774412|gb|ABG16931.1| cold-shock dead-box protein A [Yersinia pestis Nepal516]
 gi|108780894|gb|ABG14952.1| cold-shock dead-box protein A [Yersinia pestis Antiqua]
 gi|115349113|emb|CAL22076.1| cold-shock dead-box protein A [Yersinia pestis CO92]
 gi|145212247|gb|ABP41654.1| cold-shock dead-box protein A [Yersinia pestis Pestoides F]
 gi|149289109|gb|EDM39189.1| cold-shock dead-box protein A [Yersinia pestis CA88-4125]
 gi|152959087|gb|ABS46548.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia
           pseudotuberculosis IP 31758]
 gi|162353348|gb|ABX87296.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           Angola]
 gi|165915393|gb|EDR34003.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165922308|gb|EDR39485.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165990956|gb|EDR43257.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166204501|gb|EDR48981.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166961429|gb|EDR57450.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167051254|gb|EDR62662.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167057246|gb|EDR66992.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|186696873|gb|ACC87502.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682301|gb|EEO78393.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|229687196|gb|EEO79271.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695506|gb|EEO85553.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229700407|gb|EEO88439.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|262363250|gb|ACY59971.1| cold-shock dead-box protein A [Yersinia pestis D106004]
 gi|262367181|gb|ACY63738.1| cold-shock dead-box protein A [Yersinia pestis D182038]
 gi|270337648|gb|EFA48425.1| ATP-dependent RNA helicase DeaD [Yersinia pestis KIM D27]
 gi|294355647|gb|ADE65988.1| cold-shock dead-box protein A [Yersinia pestis Z176003]
 gi|320016694|gb|ADW00266.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 664

 Score =  295 bits (756), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 151/379 (39%), Positives = 238/379 (62%), Gaps = 9/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  ++ A+ D GY KP+PIQ++ IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 9   FADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHN 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           +   +A ++ P+ L+L PTRELA QVA+    + K+ N + V  L GG  ++ Q + L +
Sbjct: 69  I---KADLKSPQVLVLAPTRELAVQVAEALSSFSKHINGVNVVALYGGQRYDVQLRALRQ 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 126 GPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +      Y K  AL+ + L++
Sbjct: 186 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWRVGGGYRKNEALV-RFLEA 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 245 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  IE
Sbjct: 304 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNIE 363

Query: 362 ---KLIEKKVDWLNGDLSS 377
              KL   +V+  N DL S
Sbjct: 364 RTMKLTIPEVELPNADLLS 382


>gi|312898631|ref|ZP_07758021.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
 gi|310620550|gb|EFQ04120.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
          Length = 522

 Score =  295 bits (756), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 156/369 (42%), Positives = 232/369 (62%), Gaps = 10/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +L +S  ++ A+ D G+ +PTPIQ  +IP+ L+ HD+ G AQTGTGKTA++ +P+L  
Sbjct: 9   FKNLQISDVIINALNDMGFEEPTPIQEGSIPVALEGHDMIGQAQTGTGKTAAYGIPVLEK 68

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL  G  +    +++IL PTRELA QVA+      +   +    + GG   E Q ++L +
Sbjct: 69  ILAAGAPK--ELQSVILSPTRELAIQVAEEINHLAQYTPVQALPIYGGQDMERQLRRLRK 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++DH  RG + +++I  +V+DEAD ML+MGFI  I  I S  P TRQTL
Sbjct: 127 SPQIIVATPGRLIDHMKRGTVKLSSISTIVLDEADEMLNMGFIDDINLIMSATPETRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           LFSATM   +QK++E FL++P+ I +     T + +E  +  VA   ++   C LL   L
Sbjct: 187 LFSATMPAPIQKLAETFLKDPQIIRMKAKEVTIDLVEQSYIEVADRQKFDVLCRLLD--L 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q  D     IIF   K+ V  L   L+K+G+S   IHG++ Q  R  ++  F+E TI ++
Sbjct: 245 QEPDL---AIIFVRTKRRVDELSEGLKKRGYSAEGIHGDLTQAKRDSVIRQFREKTIDIL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   E+Y+HR+GRTGRAG+ G+A T V   +I H+  
Sbjct: 302 VATDVAARGLDISGVTHVYNYDLPQDPESYVHRVGRTGRAGQSGEATTFVIPREIDHLRT 361

Query: 360 IEKLIEKKV 368
           IEKLI+ ++
Sbjct: 362 IEKLIKHRI 370


>gi|25010852|ref|NP_735247.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae NEM316]
 gi|76786821|ref|YP_329524.1| DEAD/DEAH box helicase [Streptococcus agalactiae A909]
 gi|76799328|ref|ZP_00781491.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 18RS21]
 gi|77406817|ref|ZP_00783849.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae H36B]
 gi|77411327|ref|ZP_00787675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae CJB111]
 gi|23095231|emb|CAD46441.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76561878|gb|ABA44462.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae A909]
 gi|76585318|gb|EAO61913.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 18RS21]
 gi|77162587|gb|EAO73550.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae CJB111]
 gi|77174571|gb|EAO77408.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae H36B]
          Length = 528

 Score =  295 bits (756), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 152/371 (40%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ AV  AG+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      ++    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L 
Sbjct: 61  NKIHTEDNTIQ---ALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGR+LD   R  L +N+IE L++DEAD ML+MGF+  I+ I S VP TRQT
Sbjct: 118 SGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T   ++  +V    + ++K   + +L+ 
Sbjct: 178 LLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYV--RVKENEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLTII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  +
Sbjct: 355 ENLTKKRMTGM 365


>gi|239909011|ref|YP_002955753.1| ATP-dependent RNA helicase [Desulfovibrio magneticus RS-1]
 gi|239798878|dbj|BAH77867.1| ATP-dependent RNA helicase [Desulfovibrio magneticus RS-1]
          Length = 496

 Score =  295 bits (755), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 152/372 (40%), Positives = 221/372 (59%), Gaps = 4/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    L   ++  +  AGY  PTPIQ + +P V++ HD+ G+AQTGTGKTA+F+LP+L
Sbjct: 1   MSFDSFCLHDSLIANIKRAGYETPTPIQAEAVPHVMEGHDLMGLAQTGTGKTAAFLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L    AR R PRTLIL PTRELA Q+  +   + +   L   ++ GG+    Q + L 
Sbjct: 61  HRLITNPARTRSPRTLILAPTRELAEQIFRSTLDFMRGTRLRATVIYGGVGMFPQVRALR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DV++  PGR+LDH N+G +  + +E LV+DEAD M DMGF+P I+ I + +P  RQT
Sbjct: 121 QGVDVIVACPGRLLDHLNQGNVRFDGLETLVLDEADHMFDMGFLPDIKRILAALPAKRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +  ++   L +P  + +   +  + T+EH        +++K  LL  LL 
Sbjct: 181 LLFSATMPPAISGLAAETLTDPVTVRIGHLAPLS-TVEHAIYPV--SHNQKAPLLLHLL- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   ++ I+F   K    NL   L + G     + GN+ QR R   +  F+ G+ Q++V
Sbjct: 237 GEAGKESVIVFTRTKHRAKNLAQQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV NFD+P+ AE Y HRIGRTGRA R G+A T V  ED+  + AI
Sbjct: 297 ATDIAARGIDVSQVAHVVNFDIPDTAEAYTHRIGRTGRAERDGQAHTFVTGEDMGMVRAI 356

Query: 361 EKLIEKKVDWLN 372
           E  ++K +   N
Sbjct: 357 ESHMKKPLPRRN 368


>gi|254374244|ref|ZP_04989726.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548]
 gi|151571964|gb|EDN37618.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548]
          Length = 441

 Score =  295 bits (755), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 152/365 (41%), Positives = 234/365 (64%), Gaps = 4/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+  +  A+   GY KPTPIQ + IP+VL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MKFSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  +  +++   V+DEADRMLDMGFI  ++ I  L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++  FL NP+ +  +  ++T + I    + T  + +K  AL+  L+
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQK-IYTLDKSNKINALI-SLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+ +   ++F   K     +   L   G S  AIHGN  Q +R K L++FK   I ++
Sbjct: 239 KDQN-LHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+PN AE+Y+HRIGRTGRAG+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357

Query: 360 IEKLI 364
           IE LI
Sbjct: 358 IEHLI 362


>gi|225025644|ref|ZP_03714836.1| hypothetical protein EIKCOROL_02546 [Eikenella corrodens ATCC
           23834]
 gi|224941594|gb|EEG22803.1| hypothetical protein EIKCOROL_02546 [Eikenella corrodens ATCC
           23834]
          Length = 466

 Score =  295 bits (755), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 151/371 (40%), Positives = 240/371 (64%), Gaps = 8/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS ++  A+ D GY +PT IQ   IP VL  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FTNLGLSAEITAALADQGYEQPTAIQTAAIPKVLAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L +       P     R L+L PTRELA Q+  N   Y KN  L   +L GG+  + Q  
Sbjct: 65  LRRYATTSTSPAMHPVRMLVLTPTRELADQIDQNTAAYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + ++ +EI+V+DEADRMLDMGFI  I+ I  L+P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVQQKNIRLDKVEIVVLDEADRMLDMGFIDDIRRIMQLLPKQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P++++    ++ + ++E   +A     ++K  LL++
Sbjct: 185 RQTLLFSATFSPPIRKLAQDFMNRPEQVQTAPQNTASASVEQHIIAI--DTAQKRNLLER 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+     +   I+FC  K++V  +   L+++G SV  IHG+  Q++R++ L+ FK G ++
Sbjct: 243 LIVDLH-INQVIVFCKTKQSVDQVARDLKRRGLSVAPIHGDKSQQTRLETLNAFKAGELR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P +AE+Y+HRIGRTGRAG  G A +L+ +++ K  
Sbjct: 302 VLVATDVAARGLDIAELPFVINYEMPTQAEDYVHRIGRTGRAGAEGVAISLMDEDEQKMF 361

Query: 358 DAIEKLIEKKV 368
           +AI++LI K++
Sbjct: 362 EAIKELIGKEL 372


>gi|56477451|ref|YP_159040.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
 gi|56313494|emb|CAI08139.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
          Length = 463

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 153/368 (41%), Positives = 223/368 (60%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ A+   GY  PT +Q + IP  L   D+   + TG+GKTA+F LP L
Sbjct: 1   MTFQELGLHEALLQAIATTGYTVPTSVQEQAIPAALAGADLMVSSHTGSGKTAAFTLPSL 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
             ++++  A    PR L+L PTRELA QV    + Y +N   L  A L+GG PF AQ K 
Sbjct: 61  HRLIDRKPAPGAGPRVLVLTPTRELAQQVEKAVKTYARNLRYLNTACLVGGAPFFAQAKL 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R  DV++ TPGR++DH NR KL +++IE+LV+DEADRMLDMGF+  I+ I +  P +R
Sbjct: 121 LSRPVDVVVATPGRLIDHLNRRKLKLSDIEVLVLDEADRMLDMGFVEDIETIVAATPASR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+   +  ++    +NP+RIE+         IE   +        K  LL+ L
Sbjct: 181 QTLLFSATLDGVVGNLARKMTRNPQRIEIAATVENRANIEQRLLMAD-NIVHKNRLLESL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   D ++  ++F   K+    +  +L+++GFS  A+HG++ Q +R + L   ++G I +
Sbjct: 240 LGGDD-LQQAVVFTATKRGAEEVSLNLQEKGFSAAALHGDMHQTARNRTLDKLRQGRIGV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + HV NFD P + E+Y+HRIGRTGRAGR G A T     ++  I 
Sbjct: 299 LVATDVAARGIDVAGISHVINFDAPRQVEDYVHRIGRTGRAGRDGIAITFSGPREMGIIR 358

Query: 359 AIEKLIEK 366
           AIE+   K
Sbjct: 359 AIERFTGK 366


>gi|170025939|ref|YP_001722444.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis YPIII]
 gi|169752473|gb|ACA69991.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           YPIII]
          Length = 664

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 151/379 (39%), Positives = 238/379 (62%), Gaps = 9/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  ++ A+ D GY KP+PIQ++ IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 9   FADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHN 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           +   +A ++ P+ L+L PTRELA QVA+    + K+ N + V  L GG  ++ Q + L +
Sbjct: 69  I---KADLKSPQVLVLAPTRELAVQVAEALSSFSKHINGVKVVALYGGQRYDVQLRALRQ 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 126 GPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +      Y K  AL+ + L++
Sbjct: 186 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWRVGGGYRKNEALV-RFLEA 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 245 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  IE
Sbjct: 304 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNIE 363

Query: 362 ---KLIEKKVDWLNGDLSS 377
              KL   +V+  N DL S
Sbjct: 364 RTMKLTIPEVELPNADLLS 382


>gi|328676918|gb|AEB27788.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida Fx1]
          Length = 442

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 152/365 (41%), Positives = 234/365 (64%), Gaps = 4/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+  +  A+   GY KPTPIQ + IP+VL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MKFSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  +  +++   V+DEADRMLDMGFI  ++ I  L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++  FL NP+ +  +  ++T + I    + T  + +K  AL+  L+
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQK-IYTLDKSNKINALI-SLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+ +   ++F   K     +   L   G S  AIHGN  Q +R K L++FK   I ++
Sbjct: 239 KDQN-LHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+PN AE+Y+HRIGRTGRAG+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357

Query: 360 IEKLI 364
           IE LI
Sbjct: 358 IEHLI 362


>gi|317479221|ref|ZP_07938356.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
 gi|316904509|gb|EFV26328.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
          Length = 425

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/368 (42%), Positives = 230/368 (62%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY  PTPIQ K+IP++LQ  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MTFENLNLIEPILKALQKEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K   R  + + LIL PTRELA Q+ + F  YGK   L  A++ GG+  + Q  +L+
Sbjct: 61  QKLYKTDNRKSI-KALILTPTRELAIQIGECFSAYGKYTGLRHAVIFGGVGQKPQTDELK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +L+ TPGR+ D  N+G + +  +E  V+DEADRMLDMGFI  I+ I  L+P  RQT
Sbjct: 120 RGVQILVATPGRLQDLVNQGFINLKALEFFVLDEADRMLDMGFIHDIRRILKLLPAKRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++ ++ + L +P+++EV   SST +TI       + +  +K  LL  LL+
Sbjct: 180 LFFSATMPPEIETLANSMLTHPEKVEVTPASSTVDTISQSVY--FVEKKEKKDLLIHLLK 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   +++ +IF   K     L  +L K G    AIHGN  Q +R + L+ FK   +++++
Sbjct: 238 N-PAIESVLIFTRTKYGADKLARTLSKSGIRAEAIHGNKSQNARQRALTGFKNHELRVLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+++PN  E Y+HRIGRTGRAG  G A +    E++ ++  I
Sbjct: 297 ATDIAARGIDVDQLSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCESEELPYLKDI 356

Query: 361 EKLIEKKV 368
           +KLI K +
Sbjct: 357 QKLIGKSI 364


>gi|315648503|ref|ZP_07901602.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315276197|gb|EFU39543.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 536

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 147/367 (40%), Positives = 234/367 (63%), Gaps = 6/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FAD GL P+V+ A+ + G+ + TPIQ ++IP+ L   D+ G AQTGTGKTA+F LP++ 
Sbjct: 3   NFADFGLEPRVLQAITELGFEEATPIQSQSIPIALTGRDMIGQAQTGTGKTAAFGLPLIH 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + K   R+    +LI+ PTRELA QVA+   K  +   +    + GG     Q + L++
Sbjct: 63  KIAKEEERIV---SLIMTPTRELAIQVAEEIGKLSRFKGIRSLAIYGGQDIGRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH NR  + +++++ +V+DEAD MLDMGF+  IQ+I  LVP  RQTL
Sbjct: 120 KPQIIIGTPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDIQSILKLVPEERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +QK++  FL++P+ + V     +A  I+  ++    +  +K   L +LL  
Sbjct: 180 LFSATMPANIQKLASQFLKDPEHVSVIPKHVSAPLIDQAYIEVPER--QKFEALSRLL-D 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            ++ +  I+F   K+ V  L  +L+K+G+S   +HG++ Q  R  ++  F++G+I ++VA
Sbjct: 237 MESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HV NFD+P   E+Y+HRIGRTGRAG+ G A++ V   ++ H+  IE
Sbjct: 297 TDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLYFIE 356

Query: 362 KLIEKKV 368
           ++   ++
Sbjct: 357 RVTRHRI 363


>gi|284007123|emb|CBA72399.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
          Length = 438

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 165/425 (38%), Positives = 252/425 (59%), Gaps = 24/425 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS +++ A+ +AGY KPT IQ + IP +L   D+   AQTGTGKTA FVLP+L
Sbjct: 7   MCFNSLGLSAEILSAIKEAGYEKPTSIQQQAIPAILAGKDLLASAQTGTGKTAGFVLPIL 66

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                  ++ KG+  VR    LIL PTRELAAQV  N   Y +   L   ++ GG+    
Sbjct: 67  QHLSQTPVVVKGKKPVR---ALILAPTRELAAQVGQNVRNYSQFLRLKSLVVFGGVSINP 123

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G D+L+ TPGR+LD   +  + ++ +EILV+DEADRMLDMGFI  I+ I   +
Sbjct: 124 QMMKLRGGVDILVATPGRLLDLVQQNAVSLSQVEILVLDEADRMLDMGFIHDIRRILDKL 183

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT ++++++++ + L NP  +EV   +S ++ ++      +    +K  L
Sbjct: 184 PTKRQNLLFSATFSNQIKQLANSLLHNPTILEVAPRNSASQQVKQLI--HFVDKRRKAEL 241

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L+ S++  +  ++F   K     L   L K G    AIHGN  Q +R + L++FK G
Sbjct: 242 LSYLIGSEN-WQQVLVFTRTKYGANRLTEHLIKDGIKAMAIHGNKSQGARTRALADFKSG 300

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+AARGLDI  + +V N+++PN AE+Y+HRIGRTGRA   G A +LVA ++ 
Sbjct: 301 AIRVLVATDIAARGLDIEQLPYVVNYELPNVAEDYVHRIGRTGRAAATGLAVSLVAIDEQ 360

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
             + AIE+L+++ +  +   L+   P          +   +  P+PQK     + +++ +
Sbjct: 361 SLLTAIERLLKQSIPRM--ALAGYEP----------DPTIRPEPMPQKKPANKQHRRHSA 408

Query: 415 SQKSH 419
           ++ SH
Sbjct: 409 AKVSH 413


>gi|302878957|ref|YP_003847521.1| DEAD/DEAH box helicase domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302581746|gb|ADL55757.1| DEAD/DEAH box helicase domain protein [Gallionella
           capsiferriformans ES-2]
          Length = 546

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/371 (41%), Positives = 229/371 (61%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ A+ + GY +PTPIQ + IP ++  HD+   AQTG+GKTA+F+LP L
Sbjct: 1   MTFEELNLNPSILKAIAETGYTEPTPIQEQAIPEIIAGHDLMASAQTGSGKTAAFILPAL 60

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L    A   + PR L+L PTRELA QV D   KYGKN    +  ++GG+P+  QN+ L
Sbjct: 61  NRLATPSAMPGKGPRVLVLTPTRELAQQVCDAATKYGKNMRFKIISILGGMPYPVQNRLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+L+ TPGR++DH  RG++  + +E+L++DEADRMLDMGF+  ++ I +  P TRQ
Sbjct: 121 SSHVDILVATPGRLIDHLERGRIDFSRLEMLILDEADRMLDMGFVDDVERIAAATPATRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQ 237
           TLLFSAT+   +  ++   L+ PKRI V+      E IE    F    A  +K   +L  
Sbjct: 181 TLLFSATLEGVVGNLASRLLKTPKRINVSAAKDKHENIEQRMMFADDVAHKNK---MLSH 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL   + +   ++F   K++   L   L  QG SV A+HG++ QR R + L N + G ++
Sbjct: 238 LLTDTE-VNQALVFTATKRDADGLADQLSAQGHSVAALHGDMSQRERNRTLLNMRNGNVR 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  + HV NFD+P  AE+Y+HRIGRTGR G  G A +  +  D + +
Sbjct: 297 ILVATDVAARGLDVRGISHVINFDLPKFAEDYVHRIGRTGRGGSSGIAISFASNRDAQLL 356

Query: 358 DAIEKLIEKKV 368
             IE+  E+ +
Sbjct: 357 KRIERYTEQSI 367


>gi|294668347|ref|ZP_06733450.1| hypothetical protein NEIELOOT_00259 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309665|gb|EFE50908.1| hypothetical protein NEIELOOT_00259 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 399

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 153/366 (41%), Positives = 234/366 (63%), Gaps = 8/366 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+ + GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 9   FSSLGLGQEIVSALTEQGYETPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 68

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 69  LKRFATASTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDKQTA 128

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  +  + +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 129 DLRAGCEIVVATVGRLLDHVKQKNINFSKVEIVVLDEADRMLDMGFIDDIRTIMRMLPKQ 188

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT  + ++K++ +F+ +P++IEV   ++T   +E   +A      +K  LL++
Sbjct: 189 RQTLLFSATFAEPIRKLARDFMNSPEQIEVAAQNTTNANVEQHVIAV--DTFQKRRLLER 246

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+   D M   I+FC  K++V  +   L+++  S  AIHG+  Q++R++ LS FKEG ++
Sbjct: 247 LIVDLD-MNQVIVFCKTKQSVDQVTRDLQRREISAQAIHGDKSQQTRLETLSAFKEGNLR 305

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 306 VLVATDVAARGLDIAELPFVINYEMPTQPEDYVHRIGRTGRAGADGVAISLMDETEQKMF 365

Query: 358 DAIEKL 363
           +AI++L
Sbjct: 366 EAIKEL 371


>gi|325676644|ref|ZP_08156320.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
 gi|325552534|gb|EGD22220.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
          Length = 453

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 153/361 (42%), Positives = 226/361 (62%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +  +V+ A+ D GY  P+PIQ  TIP +L+  DV G+AQTGTGKTA+F +P+L+ 
Sbjct: 17  FADLQIDERVLKALSDVGYESPSPIQAATIPTLLEGKDVVGLAQTGTGKTAAFAIPILSR 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+  R   ++P+ LIL PTRELA QVA+ F KY  +   L V  + GG  +  Q   L R
Sbjct: 77  LDVDR---KVPQALILAPTRELALQVAEAFGKYSAHIPGLQVLPIYGGQAYGVQLSGLRR 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  +G L ++N+E LV+DEAD ML MGF   ++ I +  P  +Q  
Sbjct: 134 GAQIIVGTPGRVIDHLEKGTLDLSNLEYLVLDEADEMLKMGFQDDVERILADTPEYKQVA 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K+S+ +L +P  I V   ++TA  I   +V    Q  +K   L ++L+ 
Sbjct: 194 LFSATMPPAIRKISKQYLHDPVEITVKAKTATASNITQRWVQVAHQ--RKLDALTRILEV 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + + +  IIF   K+   +L   L  +GFS  AI+G+I Q  R + +   K G + ++VA
Sbjct: 252 E-SFEAMIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDILVA 310

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   VA  +   + +IE
Sbjct: 311 TDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRTGDALLFVAPRERHLLKSIE 370

Query: 362 K 362
           +
Sbjct: 371 R 371


>gi|149204026|ref|ZP_01880994.1| DEAD/DEAH box helicase-like protein [Roseovarius sp. TM1035]
 gi|149142468|gb|EDM30513.1| DEAD/DEAH box helicase-like protein [Roseovarius sp. TM1035]
          Length = 429

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 153/372 (41%), Positives = 236/372 (63%), Gaps = 9/372 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +GL   +V  + + G  +PTPIQ   IP  L   DV G+AQTGTGKT +F LP++T L +
Sbjct: 1   MGLPAALVRKLANEGITEPTPIQTHAIPHALNGFDVLGLAQTGTGKTMAFGLPLITALMQ 60

Query: 66  --GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
             G+   +  R+LIL PTRELA+Q+ D      K+  + + L++GG     Q K+LE+G 
Sbjct: 61  APGKPAPKTIRSLILAPTRELASQIRDALLPLVKDSPIKINLVVGGASINPQIKRLEQGT 120

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
           D+L+ TPGR+LD  +R  + ++    LV+DEAD+MLD+GFI  ++ I  L+   RQT+LF
Sbjct: 121 DILVATPGRLLDLIDRRAVRLDAAHFLVLDEADQMLDLGFIHALRRIAGLLAAERQTMLF 180

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQS 241
           SATM  ++++++ ++L++PKR++V+ P   A+ +  E  FVA  A    K  LL +LL  
Sbjct: 181 SATMPKQMEELAGSYLKHPKRVQVSPPGKAADKVTQEVHFVAKAA----KPDLLIELLAK 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  ++F   K     L   LE+ G+SV AIHGN  Q  R + L +F++G ++++VA
Sbjct: 237 HKS-ELALVFGRTKHGSDKLAKRLEQAGYSVAAIHGNKSQGQRERALKSFRDGHVKILVA 295

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIPDV HV+N+++PN  +NY+HRIGRT RAGR G A    A +++  +  I+
Sbjct: 296 TDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGRDGAAIAFCAPDEMGELKDIQ 355

Query: 362 KLIEKKVDWLNG 373
           K++   +   +G
Sbjct: 356 KVLGTTIPVASG 367


>gi|241205862|ref|YP_002976958.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859752|gb|ACS57419.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 580

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 149/375 (39%), Positives = 235/375 (62%), Gaps = 4/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LG+S  ++  +   G   PTPIQ  +IPL+L+  D+ G+AQTGTGKTA+F LP++ 
Sbjct: 24  NFESLGVSKPIIATLFQLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 83

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L  ++ R   R  RTLIL PTREL  Q+A++ +K+ +  +L + +++GG+    Q  +L
Sbjct: 84  KLLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQLQL 143

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G D+L+ TPGR+LD  NR  + +  +  LV+DEAD+MLD+GF+  ++ I  +VP  RQ
Sbjct: 144 EKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKRQ 203

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   +  ++  +L +P ++EV  P   A+ +E  +V   A  + K  LL++ L
Sbjct: 204 TMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQ-YVHFVAGKNDKTELLRKSL 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++     ++F   K     L   LE  G+SV +IHGN  Q  R + L  F++G+I+ +
Sbjct: 263 -TENPDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKTL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DIP V HV+N+D+P   + Y+HRIGRT RAGR G A    A ++ K +  
Sbjct: 322 IATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRD 381

Query: 360 IEKLIEKKVDWLNGD 374
           IE+L+   +   +G+
Sbjct: 382 IERLMGIDITVASGE 396


>gi|192361806|ref|YP_001982445.1| ATP-dependent RNA helicase DeaD [Cellvibrio japonicus Ueda107]
 gi|190687971|gb|ACE85649.1| ATP-dependent RNA helicase DeaD [Cellvibrio japonicus Ueda107]
          Length = 625

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/369 (42%), Positives = 230/369 (62%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL LS  V+ A+   GY  P+PIQ   IP++L   D+ G+AQTGTGKTA+F LP+L+ 
Sbjct: 31  FADLALSAPVLKAIQAVGYEVPSPIQAAAIPILLDGGDILGMAQTGTGKTAAFALPLLSK 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+  +     P+ L+L PTRELA QVA+ F+KY  +     V  + GG    +Q ++L+R
Sbjct: 91  LDLSQNE---PQILVLAPTRELAIQVAEAFQKYAADMPGFHVLPIYGGQDMTSQLRQLKR 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L +NN++ LV+DEAD ML MGFI  ++ I    P TRQT 
Sbjct: 148 GVHVVVGTPGRVMDHLRRGSLNLNNLKSLVLDEADEMLRMGFIDDVEWILEHTPETRQTA 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++KV++N+L++ K I++ +   T + IE  +       + K   L ++L+ 
Sbjct: 208 LFSATMPREIRKVADNYLRDAKEIKIASTQQTGDNIEQVYWMVSG--TNKLDALTRILEV 265

Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   IIF   K   V L   LE +G+S   ++G+++Q+ R + +   K   + ++
Sbjct: 266 EPFDGM---IIFVRTKTATVELAEKLEARGYSAAPLNGDMNQQLRERTIERLKTSKLDIV 322

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+  V HV N+D+P  +E Y+HRIGRTGRAGR GKA   VA  + + +  
Sbjct: 323 IATDVAARGIDVERVSHVVNYDIPYDSEAYVHRIGRTGRAGRSGKAILFVAPREKRLLYT 382

Query: 360 IEKLIEKKV 368
           IEK   K +
Sbjct: 383 IEKATRKPI 391


>gi|319441074|ref|ZP_07990230.1| ATP-dependent RNA helicase [Corynebacterium variabile DSM 44702]
          Length = 732

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 150/363 (41%), Positives = 222/363 (61%), Gaps = 11/363 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL  +++ AV   GYV P+PIQ  TIP ++  HDV G+AQTGTGKTA+F LP L+ 
Sbjct: 71  FAGLGLPDRILAAVEKVGYVTPSPIQAATIPALMDGHDVVGLAQTGTGKTAAFALPALSR 130

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           L+      R P+ L+L PTRELA Q AD FE +  +   +++  + GG P+ AQ   L R
Sbjct: 131 LDTTE---RHPQVLVLAPTRELALQSADAFESFASHIGGVSILPIYGGAPYGAQLSGLRR 187

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH  +G L ++++  LV+DEAD ML+MGF   ++ I +  P +RQ  
Sbjct: 188 GAQVIVGTPGRIIDHLEKGSLDLSHLRFLVLDEADEMLNMGFQEDVERILADTPDSRQVA 247

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++S+ +L +P+   V +   T + I   ++     +  K   L ++L+ 
Sbjct: 248 LFSATMPSAIRRLSKQYLNDPQEYTVKSEQRTGDNITQDYL--MVSHRNKLDALTRILEV 305

Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D M   IIF   K +   L   L  +GF   AI+G+I Q  R + +   K+G + ++
Sbjct: 306 TEFDAM---IIFVRTKSDTEELADKLRARGFEAAAINGDIAQNQRERTVDQLKDGRLDIL 362

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HVFN+D+P   E+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 363 VATDVAARGLDVDRITHVFNYDIPRDTESYVHRIGRTGRAGRTGRAILFVTPRERRLLKN 422

Query: 360 IEK 362
           IE+
Sbjct: 423 IER 425


>gi|170725457|ref|YP_001759483.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169810804|gb|ACA85388.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 432

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 151/370 (40%), Positives = 233/370 (62%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P+++ A+ + GY K TP+Q + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFAPEILRAISECGYQKMTPVQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  -TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +++K     R   R LIL PTRELA+Q+ADN   Y K+  ++V  + GG+  E Q +K
Sbjct: 61  QKMIDKPSETQRSNTRALILTPTRELASQIADNINDYSKHMQVSVLTIYGGVKLETQAQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++RG D+++ TPGR+L+H     L ++N++ +V+DEADRMLDMGF+  IQ +   V    
Sbjct: 121 IKRGVDIIVATPGRLLEHIQACNLNLSNVDFMVLDEADRMLDMGFVSDIQKVLQAVNKNS 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT +  ++K++ +FL  PK I V+  ++TA+T+    V    +  +K  L+ +L
Sbjct: 181 QKMLFSATFSSSVKKLANDFLDKPKLISVDKQNTTADTVSQ--VVYPVEQRRKRELVSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   K  +IF   +     L   L   G     +HG   Q +R + L  FKEG +++
Sbjct: 239 I-GKKNWKQVLIFTATRDAADKLVKELNLDGIPSSVVHGEKAQGNRRRALREFKEGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDI D+ +V N+D+P  AE+Y+HRIGRTGRAG+ G A +LV++E+ + + 
Sbjct: 298 LVATEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEERTLA 357

Query: 359 AIEKLIEKKV 368
            IEKLI KK+
Sbjct: 358 DIEKLIGKKL 367


>gi|270307613|ref|YP_003329671.1| hypothetical protein DhcVS_172 [Dehalococcoides sp. VS]
 gi|270153505|gb|ACZ61343.1| hypothetical protein DhcVS_172 [Dehalococcoides sp. VS]
          Length = 561

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 151/375 (40%), Positives = 227/375 (60%), Gaps = 8/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P V+  V   GY +PTPIQ + IP +++ HDV G+AQTGTGKTA++ LP++
Sbjct: 1   MSFESFNFAPAVMAGVRACGYQEPTPIQAQAIPPIMEGHDVIGLAQTGTGKTAAYALPII 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L   R RVR   TL++ PTRELA Q++D+F   G+   +    + GG+  + Q ++L
Sbjct: 61  QKMLSTPRGRVR---TLVIAPTRELACQISDSFRSLGQRARIRECSIYGGVNMDQQIRRL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DV++  PGR+LDH  RG + +  +E L+IDEADRM DMGF P IQ+I   +    Q
Sbjct: 118 RSGVDVVVACPGRLLDHIWRGTIDVCGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E++K+++    NP  I+V T  + A ++ H      +   +K  LL ++L
Sbjct: 178 TLLFSATMPPEVRKLTQESQTNPVTIQVGT-QAPASSVSHSVYPVKSH--QKTPLLIEIL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++ +T K+ +IF   K    NL   + K GF+  ++ GN+ Q  R  ++  F+    +++
Sbjct: 235 KTVET-KSVLIFARTKYGAENLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRRNFKIL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + HV NFD+P+  E+Y HRIGRTGR  R G+A +LV   D   +  
Sbjct: 294 VATDIAARGLDIDHISHVINFDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMVRD 353

Query: 360 IEKLIEKKVDWLNGD 374
           I++L+   +  L  D
Sbjct: 354 IQRLLSSPIQRLRVD 368


>gi|297584103|ref|YP_003699883.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           selenitireducens MLS10]
 gi|297142560|gb|ADH99317.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
           MLS10]
          Length = 528

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/384 (40%), Positives = 237/384 (61%), Gaps = 9/384 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  +S  ++ A+ + G+  P+PIQ K IP +L+ +D+ G AQTGTGKTA+F +P+L
Sbjct: 2   MTFEEFNISKSLMRAIKEMGFEAPSPIQEKVIPTILEGNDLIGQAQTGTGKTAAFGIPIL 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    R +  + +IL PTRELA QVA   +K  K   +    + GG     Q K+L+
Sbjct: 62  EKLK----RTKNVQAIILTPTRELAIQVAGEIQKLSKFQKVQTLPVYGGQSIGQQIKQLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+++ TPGR+LDH NR  L ++ I   V+DEAD MLDMGFI  I+ I  +    RQT
Sbjct: 118 RGVDIVVGTPGRVLDHVNRKTLDLSKIHTFVLDEADEMLDMGFIEDIEKIIQVSSEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+S  ++ +P+++ ++    TA +I   +     +   K   L +L+ 
Sbjct: 178 LLFSATMPPPIRKLSNKYMNSPEQVTISKSEVTAPSINQVYYKVLEK--NKLDSLCRLID 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++T   GIIFC  KK V  L  +L+ +G+    +HG++ Q  R  ++  F++ +I  ++
Sbjct: 236 SENT-DLGIIFCRTKKGVSELAEALQARGYRADGLHGDLTQSQRDSVMKKFRDSSIDFLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ +V HV N+D+P   E+Y+HRIGRTGRAGR G A TLV   ++KH+ +I
Sbjct: 295 ATDVAARGIDVQNVTHVVNYDIPQDPESYVHRIGRTGRAGREGIALTLVTPREMKHLRSI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E  I+ K+   N  L S+   +EK
Sbjct: 355 ENEIKMKIPSQN--LPSVEEVIEK 376


>gi|255324480|ref|ZP_05365597.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
           SK141]
 gi|255298386|gb|EET77686.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
           SK141]
          Length = 619

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 151/385 (39%), Positives = 240/385 (62%), Gaps = 13/385 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL  K++ AV   G+ KP+PIQ +TIP++++  DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 57  FAHLGLPEKILEAVAKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQ 116

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++    + R P+ L+L PTRELA QVAD+F+ + ++   + V  + GG  +  Q   L R
Sbjct: 117 ID---TKARHPQALVLAPTRELALQVADSFQSFAESLKGVEVLPIYGGQAYGIQLSGLRR 173

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  +G L ++ ++ LV+DEAD ML+MGF   ++ I    P  +Q  
Sbjct: 174 GAQVIVGTPGRVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILEDTPDRKQVA 233

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ- 240
           LFSATM + ++++S+ +L NP  + V +   T + I   F+     +  K     ++L+ 
Sbjct: 234 LFSATMPNAIRRLSKQYLDNPAEVTVKSERRTNDNITQRFL--LIPHRAKMDAFTRILEV 291

Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + D +   I+FC  K     +  +L  +GFS  AI+G+I Q  R + +   K+G + ++
Sbjct: 292 INYDAI---IVFCRTKHETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDIL 348

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV NFD+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +
Sbjct: 349 VATDVAARGLDVERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRS 408

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE++   +++ +  DL S++   EK
Sbjct: 409 IERVTNARLEEM--DLPSVDEVNEK 431


>gi|163751537|ref|ZP_02158759.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161328545|gb|EDP99698.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 444

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 156/374 (41%), Positives = 232/374 (62%), Gaps = 13/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P+++ A+ + GY + TP+Q + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 10  MRFESFSFAPEILRAISECGYQEMTPVQQEAIPAIRRGQDVLASAQTGTGKTAAFALPIL 69

Query: 61  TILEKGRARVRMP------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             +        MP      R LIL PTRELAAQ+ADN   Y K  +++V  + GG+  ++
Sbjct: 70  QKMFDNP----MPTQRSNTRALILTPTRELAAQIADNISDYSKYIDVSVLTIYGGVKVDS 125

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q +KL+RG D+++ TPGR+L+H     L ++N+E LV+DEADRMLDMGFI  IQ I   V
Sbjct: 126 QAQKLKRGTDIIVATPGRLLEHLQACNLNLSNVEFLVLDEADRMLDMGFISDIQKIMQAV 185

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQ LLFSAT +  ++K++ + L  PK I +N+ +STA+T+    V    +  +K  L
Sbjct: 186 NKQRQNLLFSATFSSAVKKLANDMLVKPKLISLNSQNSTADTVSQ--VVYPVEQRRKREL 243

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L +L+  +   +  +IF   +     L   L   G +   +HG   Q +R + L  FKEG
Sbjct: 244 LSELI-GKKNWQQVLIFTATRDAADKLVKELNLDGITSSVVHGEKAQGNRRRALREFKEG 302

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            ++ +VA+++AARGLDI D+ +V N+D+P  AE+Y+HRIGRTGRAG+ G A +LV++E+ 
Sbjct: 303 KVRALVATEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEE 362

Query: 355 KHIDAIEKLIEKKV 368
           + +  IE LI KK+
Sbjct: 363 RTLYDIETLIGKKL 376


>gi|193214029|ref|YP_001995228.1| DEAD/DEAH box helicase domain-containing protein [Chloroherpeton
           thalassium ATCC 35110]
 gi|193087506|gb|ACF12781.1| DEAD/DEAH box helicase domain protein [Chloroherpeton thalassium
           ATCC 35110]
          Length = 431

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 156/402 (38%), Positives = 236/402 (58%), Gaps = 10/402 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F  + L+P ++ A+ + GY  PT IQ   IP  +   D+   AQTGTGKTA+F LP+L
Sbjct: 4   INFESISLNPSILRALKELGYETPTAIQAAAIPEAILGKDILATAQTGTGKTAAFALPIL 63

Query: 61  TILEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L + R+  +R PR LIL PTRELA Q+ +N   Y +   L   +++GG+P   Q K L
Sbjct: 64  HRLGENRSYDIRAPRALILTPTRELALQIDNNIRLYARYLRLRTGVIMGGVPAHPQIKML 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R  D+L+ TPGR++D F++G + ++ I+  V+DEADRMLDMGFI  I+ I SL P   Q
Sbjct: 124 RRNPDILVATPGRLIDLFDQGFIGLDQIQTFVLDEADRMLDMGFIDDIRRIESLQPRDHQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT++ E++ ++   L+ P RIEV   SS A+ I    +  + + + K  LL  L 
Sbjct: 184 TLLFSATLSPEIEALASRMLREPVRIEVAPVSSVADNITQKVL--FVEQNNKRELLHNLF 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D +K  ++F   K+   ++   L + G S  AIH +  QR+R + L  F  G I ++
Sbjct: 242 KEND-IKRALVFTRTKQRANHVAEQLIRLGISADAIHSSKSQRARQRALMLFDRGKINVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HV N+++P+  ENY+HRIGRT RAG  G A +    ++++ +  
Sbjct: 301 VATDIAARGIDVDGISHVINYELPDDPENYVHRIGRTARAGASGTALSFCDADEVRMLKG 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           IEKL +  +   +      N P   I +A  +   K    PQ
Sbjct: 361 IEKLTKSSIAICD------NNPFHSIAVASMHKVAKAGNKPQ 396


>gi|52842555|ref|YP_096354.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629666|gb|AAU28407.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 589

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 151/369 (40%), Positives = 232/369 (62%), Gaps = 7/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+    S  +  A+ D  ++ P+PIQ +TIPL+LQ  D   +AQTGTGKTA+F LP+L 
Sbjct: 7   NFSTFNFSNALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120
            L      +   + LIL PTRELA QVA+ FE   K   N+T+A+L GG  +  Q K+L 
Sbjct: 67  NLS---PEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGRILDH ++G LL+NN++  ++DEAD ML MGFI  ++ I   +P  +Q 
Sbjct: 124 SGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQM 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   +++++  +L +P  IE+   ++T ++IE  F+  +A   +K   L ++L+
Sbjct: 184 ALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFL--FASVHQKPDALIRVLE 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D  +  I+F   K +   +   L++ G    AIHG+I Q  R +I++ FK+G I ++V
Sbjct: 242 VED-YQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV N+D+P+  E Y+HRIGRTGRAGR G     V  ++ + I +I
Sbjct: 301 ATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSI 360

Query: 361 EKLIEKKVD 369
           E+   ++++
Sbjct: 361 ERHTRQRIE 369


>gi|294139619|ref|YP_003555597.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293326088|dbj|BAJ00819.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 435

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 153/373 (41%), Positives = 231/373 (61%), Gaps = 11/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P+++ A+ + GY K TP+Q + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFAPEILRAISECGYQKMTPVQQEAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  TI-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +E  R+  R    LIL PTRELA+Q+A+N   Y K  +++V  + GG+  E Q
Sbjct: 61  QKIFDNPMETQRSNAR---ALILTPTRELASQIAENISDYSKYMDVSVLTIYGGVKLETQ 117

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            +KL+RG D+++ TPGR+L+H     L ++N++ LV+DEADRMLDMGFI  IQ I   V 
Sbjct: 118 AQKLKRGTDIIVATPGRLLEHLQACNLNLSNVDFLVLDEADRMLDMGFISDIQKIMQAVN 177

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT +  ++K++ + L  PK I +N+ +STA+T+         +  +K  LL
Sbjct: 178 KQRQNLLFSATFSSAVKKLANDMLVKPKLINLNSQNSTADTVSQVIYPV--EQRRKRELL 235

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +L+  +   +  ++F   +     L   L   G +   +HG   Q +R + L  FKEG 
Sbjct: 236 SELI-GKKNWQQVLVFTATRDAADKLVKELNLDGITSSVVHGEKAQGTRRRALREFKEGK 294

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VA+++AARGLDI D+ +V N+D+P  AE+Y+HRIGRTGRAG+ G A +LV++E+ +
Sbjct: 295 VRALVATEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEER 354

Query: 356 HIDAIEKLIEKKV 368
            +  IE LI KK+
Sbjct: 355 TLYDIETLIGKKL 367


>gi|116493289|ref|YP_805024.1| superfamily II DNA/RNA helicase [Pediococcus pentosaceus ATCC
           25745]
 gi|116103439|gb|ABJ68582.1| Superfamily II DNA and RNA helicase [Pediococcus pentosaceus ATCC
           25745]
          Length = 526

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 156/384 (40%), Positives = 235/384 (61%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ AVLD GY +PTPIQ +TIP VL+  D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MKFTELGLDEDILKAVLDNGYDEPTPIQAETIPGVLEGKDIIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    +I+ PTRELAAQ      K GK     V ++ GG     Q   L+
Sbjct: 61  QNVDLDNPNIQ---AIIISPTRELAAQTQAEIFKLGKYKKAKVQVVYGGSDIRRQINALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + +++++ LV+DEAD MLDMGF+P I++I    P  RQT
Sbjct: 118 SHPQIVVGTPGRLLDHIGRKTIRLDHVKTLVLDEADDMLDMGFLPDIEHIIEQTPSERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+   F+ +PK+I V +   TA+ ++  +V   ++  +K  +L ++L 
Sbjct: 178 LLFSATMPAPIKKIGVKFMTDPKQITVKSKELTADLVDQYYV--RSKEFEKFDILTRVLD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   K  +IF   K+ V  +   L  +G++   IHG++ Q+ RM IL  F+EG + ++V
Sbjct: 236 VQ-APKLAVIFGRTKRRVDEVSKGLVTRGYNAAGIHGDLTQQRRMSILRQFREGQLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG  G + T V   ++ ++  +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGATGTSVTFVTNWEMDYLRDV 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       L  + PP E+
Sbjct: 355 EHLTKKR-------LLPMKPPTEE 371


>gi|332992020|gb|AEF02075.1| ATP-dependent RNA helicase [Alteromonas sp. SN2]
          Length = 414

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/368 (42%), Positives = 229/368 (62%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL  +++  V + GY  P+PIQ + IP +L + D+  IAQTGTGKTASF LP+L
Sbjct: 1   MSFSALGLCTELLNTVAEKGYTTPSPIQQEAIPAILSKQDLIAIAQTGTGKTASFSLPIL 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +K R+     R LI+ PTRELAAQVA N E+Y +N  +    + GG+  E Q   L
Sbjct: 61  QLLADKPRSEPNCVRALIIAPTRELAAQVAQNVEQYSQNLKVRSTAVFGGVRIEPQKYAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+LI TPGR+LD + +G +   ++EILV+DEADRMLD+GFI +I +I  L+P  RQ
Sbjct: 121 AQGVDILIATPGRLLDLYEQGDINFEHLEILVLDEADRMLDLGFIDHIHHIQKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT + E++ ++   L  PK IE+       E I         +  +K  LL  L+
Sbjct: 181 TLLFSATFSKEIKTLATTMLNTPKTIELARAKDHIEKITQILHPVDKE--RKNELLIHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++ D     ++F   K+    L + LE +G    +IH N  Q++R   L+ F++G+I+++
Sbjct: 239 ENND-WSQILVFTRTKRGADELRNELEAKGIVAESIHANRTQQARTLALNGFRDGSIKVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DLAARG+DI  +  V N D+P  AE+YIHRIGRTGRA   G A +L + ++ K +  
Sbjct: 298 IGTDLAARGIDIQQLPCVINVDLPYVAEDYIHRIGRTGRASSEGLAISLFSDDEAKQLKT 357

Query: 360 IEKLIEKK 367
           IE+L+ ++
Sbjct: 358 IERLLGRQ 365


>gi|332363463|gb|EGJ41246.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK355]
          Length = 523

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 149/372 (40%), Positives = 234/372 (62%), Gaps = 6/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    + ++K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLN 372
           E L +K++  L 
Sbjct: 355 ENLTKKRMKGLK 366


>gi|311740664|ref|ZP_07714491.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304184|gb|EFQ80260.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 619

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 151/385 (39%), Positives = 240/385 (62%), Gaps = 13/385 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL  K++ AV   G+ KP+PIQ +TIP++++  DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 57  FAHLGLPEKILEAVAKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQ 116

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++    + R P+ L+L PTRELA QVAD+F+ + ++   + V  + GG  +  Q   L R
Sbjct: 117 ID---TKARHPQALVLAPTRELALQVADSFQSFAESLKGVEVLPIYGGQAYGIQLSGLRR 173

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  +G L ++ ++ LV+DEAD ML+MGF   ++ I    P  +Q  
Sbjct: 174 GAQVIVGTPGRVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILEDTPDRKQVA 233

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ- 240
           LFSATM + ++++S+ +L NP  + V +   T + I   F+     +  K     ++L+ 
Sbjct: 234 LFSATMPNAIRRLSKQYLDNPAEVTVKSERRTNDNITQRFL--LIPHRAKMDAFTRILEV 291

Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + D +   I+FC  K     +  +L  +GFS  AI+G+I Q  R + +   K+G + ++
Sbjct: 292 INYDAI---IVFCRTKHETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDIL 348

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV NFD+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +
Sbjct: 349 VATDVAARGLDVERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRS 408

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE++   +++ +  DL S++   EK
Sbjct: 409 IERVTNARLEEM--DLPSVDEVNEK 431


>gi|148244296|ref|YP_001218990.1| ATP-dependent RNA helicase RhlE [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326123|dbj|BAF61266.1| ATP-dependent RNA helicase RhlE [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 422

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/370 (41%), Positives = 232/370 (62%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ A+   GY +P+PIQ ++IP +L   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSKLGLSDSILKAIEQKGYSEPSPIQNQSIPAILNGKDVMAAAQTGTGKTACFALPIL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            IL K +  +    RTLIL PTRELA QV+D+   YGK   L  +++ GG+    Q ++L
Sbjct: 61  EILSKKKPTKSNQVRTLILTPTRELAIQVSDSVTTYGKYLPLKSSVVFGGVKINPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD +++  +  + +EI+V DEADRMLDMGFI  I+ I  ++P  +Q
Sbjct: 121 CSGVDILVATPGRLLDLYSQNSVKFDMLEIVVFDEADRMLDMGFINDIKRILKILPSKKQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT ++++  ++++ + NP  I V   +ST + I+          SKK ALL  L+
Sbjct: 181 TLMFSATFSNKILTLAKSLVNNPVEISVTPRNSTVKAIKQWIHP--VDKSKKHALLTHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q  +     ++F   K     + + LEK+     AIH N  Q +R + L +FK   + ++
Sbjct: 239 QEHN-WHQVLVFSRTKYGANRIVNQLEKKKIRATAIHSNKSQGARTRALLDFKNHEVNVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG++I  + HV NFD+P   E+Y+HRIGRTGRAG  G+A +LV+ ++ K +  
Sbjct: 298 VATDIAARGIEINQLPHVINFDLPYVPEDYVHRIGRTGRAGSKGEAISLVSADEAKQLFD 357

Query: 360 IEKLIEKKVD 369
           +E LI+ K+D
Sbjct: 358 VECLIQNKLD 367


>gi|148652953|ref|YP_001280046.1| DEAD/DEAH box helicase domain-containing protein [Psychrobacter sp.
           PRwf-1]
 gi|148572037|gb|ABQ94096.1| DEAD/DEAH box helicase domain protein [Psychrobacter sp. PRwf-1]
          Length = 516

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 148/365 (40%), Positives = 232/365 (63%), Gaps = 6/365 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L+P+++ A+  +GY  PTPIQ  +IP  L   D+   AQTG+GKTA+FVLPML  
Sbjct: 42  FVDLELAPELLEALTSSGYKHPTPIQALSIPPALAGRDLLLSAQTGSGKTAAFVLPMLDK 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121
           + + +A  ++  T+IL PTRELA QV+D+  +Y  K  N+    L+GG P+  Q + L +
Sbjct: 102 IIRDKATNKVVHTVILTPTRELANQVSDSVRQYSSKTRNIFSVPLVGGAPYGGQIRALNK 161

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+I TPGR +DH N G++ ++ ++IL++DEADRMLDMGF   I+ +    P  RQT+
Sbjct: 162 GVQVIIATPGRFIDHMNSGRIDLSELDILILDEADRMLDMGFAEDIEKVMKAAPKNRQTI 221

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT    + K++ +F  NP+RI++   + T    E  + A    ++ K  +L  LL  
Sbjct: 222 MCSATWDGPVGKIAASFTNNPERIDIK--AETKHIDESVYYAD--DFNHKNRILDNLLTQ 277

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D +   IIF   K++   L  SL++QG     +HG++ Q  R +I+++ K G I ++VA
Sbjct: 278 KD-VNQAIIFAATKRSCETLAKSLKEQGHKASFLHGDLPQAKRSRIINDVKAGKITILVA 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+  + HVFN+D+P + E+Y+HRIGR+GRAGR G A  + + +D   +DAI 
Sbjct: 337 TDVAARGIDVSGITHVFNYDLPRQTEDYVHRIGRSGRAGRTGIAINICSIDDRAQLDAIN 396

Query: 362 KLIEK 366
           + +++
Sbjct: 397 RYLKR 401


>gi|88813706|ref|ZP_01128932.1| DEAD/DEAH box helicase-like protein [Nitrococcus mobilis Nb-231]
 gi|88789025|gb|EAR20166.1| DEAD/DEAH box helicase-like protein [Nitrococcus mobilis Nb-231]
          Length = 586

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/384 (40%), Positives = 232/384 (60%), Gaps = 18/384 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL+P V+ A+ D GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L
Sbjct: 9   ITFQDLGLNPAVLNALHDVGYEVPSPIQAHTIPHILAGRDVLGQAQTGTGKTAAFALPLL 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
           + L+  +A   +P+ L+L PTRELA QVA+ F++Y        V  L GG  +  Q ++L
Sbjct: 69  SRLDLSQA---VPQVLVLTPTRELAIQVAEAFQRYAARLTGFHVLPLYGGQDYRGQFQRL 125

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  V++ TPGR++DH  RG L ++ +  LV+DEAD ML MGFI  ++ I   +P TRQ
Sbjct: 126 AHGTHVVVGTPGRVMDHMRRGTLKLDALACLVLDEADEMLRMGFIDDVEWILDQIPSTRQ 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSAT+   ++++++  L NP+ I +   ++TAETI   +      +  K   L ++L
Sbjct: 186 IALFSATLPPVIRRIAKKHLHNPQEISIKVRTATAETIRQRYWLVNGTH--KLDALTRIL 243

Query: 240 QSQ--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++  D M   I+F   +   V L   LE +G++  A+ G+I Q+ R   +   K G + 
Sbjct: 244 EAEPFDGM---IVFVRTRTATVELAEKLEARGYAAAALSGDISQKLREHTVQRLKGGKLD 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  + HV N+D+PN  E Y+HRIGRTGRAGR G A   V   + + +
Sbjct: 301 ILVATDVAARGLDVERISHVINYDIPNDTEAYVHRIGRTGRAGRAGDAILFVTPREQRML 360

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPP 381
             IEK   +K+       ++++PP
Sbjct: 361 RMIEKATRQKI-------TAMSPP 377


>gi|317507153|ref|ZP_07964911.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
 gi|316254555|gb|EFV13867.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
          Length = 530

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 149/361 (41%), Positives = 224/361 (62%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P V+ AV + GY  P+PIQ +TIP +L   DV G+A TGTGKTA+F LP+L+ 
Sbjct: 11  FADLELHPSVLEAVREVGYETPSPIQAQTIPALLDGRDVVGLAATGTGKTAAFALPVLSR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121
           ++    ++R P+ L+L PTRELA QV++ F +Y  K   ++V  + GG  +  Q + L R
Sbjct: 71  IDP---KLRRPQALVLAPTRELALQVSEAFSRYASKMPQVSVVCIYGGGAYPVQLQALGR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  RG L +  +  LV+DEAD ML MGF   ++ +       +Q  
Sbjct: 128 GAQVVVGTPGRVVDHLERGTLKLGELRFLVLDEADEMLKMGFQEDVERVLGAAAEEKQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K+S+ +L NP  + V   ++T+E IE  +  T   + +K  LL ++L+ 
Sbjct: 188 LFSATMPGAIRKISKTYLHNPVEVTVKAATTTSENIEQRY--TLVAHHRKLDLLTRILEV 245

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      I+F   K+    L   L  +GF+   ++G+I Q +R + +S  +EG I ++VA
Sbjct: 246 E-PFSAMIVFVRTKQATEELAERLRARGFAARPLNGDIPQAARERTVSALREGKIDILVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HVFN+D P+  E+Y+HRIGRTGRAGR G ++  V   +   I AIE
Sbjct: 305 TDVAARGLDVERITHVFNYDAPHDTESYVHRIGRTGRAGRTGVSYLFVTPRERSMIGAIE 364

Query: 362 K 362
           +
Sbjct: 365 R 365


>gi|303256630|ref|ZP_07342644.1| putative ATP-dependent RNA helicase [Burkholderiales bacterium
           1_1_47]
 gi|302860121|gb|EFL83198.1| putative ATP-dependent RNA helicase [Burkholderiales bacterium
           1_1_47]
          Length = 423

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 162/416 (38%), Positives = 240/416 (57%), Gaps = 22/416 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F  LG +P++   +   G+  PTPIQ+K IPLV Q +D+   AQTGTGKTA+FVLPML  
Sbjct: 5   FKTLGFAPQLEKLIEVNGFTSPTPIQMKAIPLVRQGYDLLAAAQTGTGKTAAFVLPMLQK 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I E    + R+PR L+L PTRELAAQV +     GK+  +  A++ GG+    Q   + 
Sbjct: 65  IIEEPTLYQKRVPRVLVLTPTRELAAQVGETILSLGKDLGVRSAVVFGGVGINPQKAAIA 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D L+ TPGR+LD  N+G   ++   IL++DEADRMLDMGF+P ++ I   +P  RQT
Sbjct: 125 KGLDFLVATPGRLLDLMNQGFADLSKTHILILDEADRMLDMGFLPDLKRILKALPPDRQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT + E++K++  FL  P+ +E+     ++   +  +    A    K  +L+ L+ 
Sbjct: 185 LLFSATFSPEIKKLASEFLNKPESVEIERNKDSSLVRQTLYRVPKAD---KHTVLRDLI- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     ++F   K     L   L K G    AIHG+  Q +R   L  FKE  + ++V
Sbjct: 241 VDNQWDQVLVFTRTKYGADKLVRHLLKDGLVAKAIHGDKSQNARTTALREFKEHKLPILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++P +AE+Y+HRIGRTGRAG  G+A++LV+ E++  + AI
Sbjct: 301 ATDIAARGLDIEKLPQVVNYELPQQAEDYVHRIGRTGRAGEAGEAYSLVSPEELPQLAAI 360

Query: 361 EKLIEK--------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           EK I+K        ++D+ +  +S+   P         N  R+  P      GF R
Sbjct: 361 EKFIKKPLPLSDFPRLDYSDWKVSAPTKP--------QNKNRRPGPRRNGPAGFKR 408


>gi|255066127|ref|ZP_05317982.1| ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC 29256]
 gi|255049672|gb|EET45136.1| ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC 29256]
          Length = 468

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 154/366 (42%), Positives = 234/366 (63%), Gaps = 8/366 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL  ++V A+ + GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 4   FASLGLGSEIVSALTEQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 63

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 64  LKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTA 123

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 124 DLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKP 183

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT    ++K++++F+  P+ +EV   ++T+  +E   +A  A   KK  LL++
Sbjct: 184 RQTLLFSATFAPPIRKLAKDFMNAPEIVEVAAQNTTSANVEQHIIAVDAL--KKRNLLER 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+     M   I+FC  K++V  +   L ++  +  +IHG+  Q+SR++ L+ FKEG+++
Sbjct: 242 LIVDLQ-MNQVIVFCKTKQSVDQVTRDLVRRNLAAQSIHGDKSQQSRLETLNAFKEGSLR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ K + K  
Sbjct: 301 VLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMF 360

Query: 358 DAIEKL 363
           +AI++L
Sbjct: 361 EAIKEL 366


>gi|52840505|ref|YP_094304.1| DEAD-box ATP dependent DNA helicase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52627616|gb|AAU26357.1| ATP-dependent RNA helicase, DEAD box family [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 414

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 161/373 (43%), Positives = 229/373 (61%), Gaps = 10/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L   +  AV + GY  PT IQ+K IPL+L  HD+ G AQTGTGKTASFVLP  
Sbjct: 1   MSFKQLALIEPLNRAVSELGYTTPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLP-- 58

Query: 61  TILEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            IL+K   + +      + LIL PTRELA QV ++  +YGK   L  A++ GG+    Q 
Sbjct: 59  -ILQKASQQTQTSPNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQI 117

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K+L+ G ++L+ TPGR+LD + +  +  + I+ LV+DEADRMLDMGFI  I+ I  L+P 
Sbjct: 118 KQLDSGLEILVATPGRLLDLYQQRAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPL 177

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT T E++ ++ N L     I++   ++  +TI+    +     + K ALL 
Sbjct: 178 KRQNLLFSATFTPEVRALARNILNKAVEIDIAPRNTAVKTIKQTVYSV--DRNHKLALLS 235

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL  ++     ++F   K     L   L +      AIHGN  Q  R+K L++FK G +
Sbjct: 236 HLLH-KNNWGQTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRIKALADFKSGKV 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q ++A+D+AARG+DI  +  V NFD+P+  E+Y+HRIGRTGRAG  G A +LV+ E+IK 
Sbjct: 295 QTLIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKL 354

Query: 357 IDAIEKLIEKKVD 369
           + +IEKLI +K++
Sbjct: 355 LLSIEKLINQKLE 367


>gi|332532711|ref|ZP_08408587.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037927|gb|EGI74376.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 415

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 170/389 (43%), Positives = 238/389 (61%), Gaps = 24/389 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P ++ A+    Y +PT IQIKTIP +L   DV G AQTGTGKTA+FVLP+L  
Sbjct: 6   FSSLNLDPLLLTAIEQNNYTQPTAIQIKTIPPILAGSDVMGSAQTGTGKTAAFVLPLLHK 65

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           L       E+G ARV     +IL PTRELA QV  +FEKY +  N+  AL  GG     Q
Sbjct: 66  LLNTPKKDEQGLARV-----VILTPTRELAQQVFASFEKYAQGTNINGALAYGGASIGPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K L + A V++ TPGR+LDH  +G +++++++ LV DEADRMLDMGFI  I+ I   +P
Sbjct: 121 IKAL-KTAQVIVATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIRRILRHIP 179

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT  D + ++S+  L+NP+ IEV+  +S A  +E    A      +K  L+
Sbjct: 180 GDRQTLLFSATFDDSVFELSKKLLKNPELIEVDKRNSAAVEVEQVIYAV--DEDRKRELV 237

Query: 236 QQLLQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             ++     MKN    +IF   K+    L   + K G    +IHG+  Q +R + L NFK
Sbjct: 238 SHMI----GMKNWRRVLIFTRTKQMADQLAKEMCKDGLKTESIHGDKSQGARDRALQNFK 293

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLDI  + +V NF++P  AE+Y+HRIGRTGRAG  G A +LV+ +
Sbjct: 294 EGITRVLVATDVAARGLDISTLRYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSLD 353

Query: 353 DIKHIDAIEKLIEKKV--DWLNGDLSSLN 379
           +   ++ IE L++ ++   WL G    LN
Sbjct: 354 EQWLLEEIEVLLDTRLTPQWLEGYEPDLN 382


>gi|94267131|ref|ZP_01290765.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93452155|gb|EAT02824.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 509

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 154/374 (41%), Positives = 230/374 (61%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L+P V  AV + GY  PTPIQ   I  +L   D+ G AQTGTGKTA+F LP+L
Sbjct: 7   MHFSQLPLAPAVSQAVAEIGYETPTPIQAAAIGPLLAGRDLLGQAQTGTGKTAAFALPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           + L+  R   + P+ L+L PTRELA QVAD  + Y ++     V  L GG     Q + L
Sbjct: 67  SRLDTSR---KYPQLLVLAPTRELALQVADEIQAYSRHLPGFQVLPLYGGQNMAQQLRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG   ++ TPGRI DH  RG L ++ +  +VIDEAD ML MGF+  ++ I +  P  RQ
Sbjct: 124 QRGVQAVVGTPGRIQDHLRRGTLKLDRLTAVVIDEADEMLKMGFVDEVEKILAQTPPQRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQL 238
             LFSATMT E+ +++   L++P+ I + T ++T ETI +H ++    Q  +K   L ++
Sbjct: 184 VALFSATMTQEIMRIARRHLKDPEEIRLKTRTTTVETISQHYWLV---QGLQKLDALTRI 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L++ + ++  +IF   K   V L   L  +GF+  A++G++ Q  R K +   K+GT+ +
Sbjct: 241 LEA-EAVEAMLIFVRTKVATVELAEKLAARGFASAALNGDMTQGLREKTVEQLKDGTLDI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   VA  +++ + 
Sbjct: 300 VVATDVAARGLDVQRISHVVNYDIPYDTESYVHRIGRTGRAGRQGQAIIFVAPREMRMLH 359

Query: 359 AIEKLIEKKVDWLN 372
           AIEK   +++  L 
Sbjct: 360 AIEKATRQQIARLQ 373


>gi|312138933|ref|YP_004006269.1| dead/deah box helicase [Rhodococcus equi 103S]
 gi|311888272|emb|CBH47584.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
          Length = 610

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 153/361 (42%), Positives = 226/361 (62%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +  +V+ A+ D GY  P+PIQ  TIP +L+  DV G+AQTGTGKTA+F +P+L+ 
Sbjct: 17  FADLQIDERVLKALSDVGYESPSPIQAATIPTLLEGKDVVGLAQTGTGKTAAFAIPILSR 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+  R   ++P+ LIL PTRELA QVA+ F KY  +   L V  + GG  +  Q   L R
Sbjct: 77  LDVDR---KVPQALILAPTRELALQVAEAFGKYSAHIPGLQVLPIYGGQAYGVQLSGLRR 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  +G L ++N+E LV+DEAD ML MGF   ++ I +  P  +Q  
Sbjct: 134 GAQIIVGTPGRVIDHLEKGTLDLSNLEYLVLDEADEMLKMGFQDDVERILADTPEYKQVA 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K+S+ +L +P  I V   ++TA  I   +V    Q  +K   L ++L+ 
Sbjct: 194 LFSATMPPAIRKISKQYLHDPVEITVKAKTATASNITQRWVQVAHQ--RKLDALTRILEV 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + + +  IIF   K+   +L   L  +GFS  AI+G+I Q  R + +   K G + ++VA
Sbjct: 252 E-SFEAMIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDILVA 310

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   VA  +   + +IE
Sbjct: 311 TDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRTGDALLFVAPRERHLLKSIE 370

Query: 362 K 362
           +
Sbjct: 371 R 371


>gi|307824650|ref|ZP_07654874.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307734304|gb|EFO05157.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 596

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 151/371 (40%), Positives = 232/371 (62%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L   V+ A+ D GY  P+PIQ +TIPL+LQ  DV G AQTGTGKTA+F LP+L+ 
Sbjct: 11  FSDLALIEPVLRALKDVGYETPSPIQAQTIPLLLQGKDVLGQAQTGTGKTAAFALPILSR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++    + + P+ L+L PTRELA QVA+ F++Y  +     V  + GG  +  Q ++L+R
Sbjct: 71  ID---LKQKDPQVLVLAPTRELAIQVAEAFQRYAAHLKGFHVLPIYGGQDYTTQLRQLKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  +G L +  +  LV+DEAD ML MGFI  ++ I   +P  RQ  
Sbjct: 128 GAHVVVGTPGRVMDHMRKGTLNLKGLGFLVLDEADEMLRMGFIDDVEWILDQIPEKRQIA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K+++ +L  P+ I +   +++AE I   +      +  K   L ++L++
Sbjct: 188 LFSATMPSVIRKIAQQYLNEPEHITIKVTTASAENIRQRYWLVSGVH--KLDALTRILEA 245

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T    IIF   K + V L   LE +G+S  AI+G++ Q  R + ++N K G + +++A
Sbjct: 246 E-TFDGMIIFVRTKTSTVELAEKLEARGYSAAAINGDMSQALRERAIANLKNGKLDILIA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A   +A  +   +  IE
Sbjct: 305 TDVAARGLDVDRITHVVNYDIPYDTESYVHRIGRTGRAGRTGDAILFIAPRERNLLANIE 364

Query: 362 KLIEKKVDWLN 372
           K  ++KV+ + 
Sbjct: 365 KATKQKVEEMG 375


>gi|257867061|ref|ZP_05646714.1| helicase [Enterococcus casseliflavus EC30]
 gi|257873396|ref|ZP_05653049.1| helicase [Enterococcus casseliflavus EC10]
 gi|257877139|ref|ZP_05656792.1| helicase [Enterococcus casseliflavus EC20]
 gi|257801117|gb|EEV30047.1| helicase [Enterococcus casseliflavus EC30]
 gi|257807560|gb|EEV36382.1| helicase [Enterococcus casseliflavus EC10]
 gi|257811305|gb|EEV40125.1| helicase [Enterococcus casseliflavus EC20]
          Length = 507

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 155/384 (40%), Positives = 236/384 (61%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS +++ +V  AG+ + TPIQ  TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKDLELSNELLTSVERAGFEEATPIQEATIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++    +++    L++ PTRELA Q  +   + GK+  + V  + GG     Q ++L+
Sbjct: 61  EKIDPTNHQLQ---GLVIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIRQLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  +E LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPDVRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F++ P+ +++     TA+ I+  +V +  +  +K  ++ +LL 
Sbjct: 178 LLFSATMPPAIKNIGVKFMKEPEHVQIKAKEMTADLIDQYYVRS--KDYEKFDIMTRLLD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 236 VQ-TPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGQLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMSYLHVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       ++ + PP EK
Sbjct: 355 ENLTKKR-------MTPMRPPTEK 371


>gi|149917594|ref|ZP_01906091.1| putative ATP-dependent RNA helicase RhlE [Plesiocystis pacifica
           SIR-1]
 gi|149821657|gb|EDM81055.1| putative ATP-dependent RNA helicase RhlE [Plesiocystis pacifica
           SIR-1]
          Length = 437

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 152/372 (40%), Positives = 217/372 (58%), Gaps = 3/372 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV +AGY  PTPIQ + IP  +   D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MSFETLGLAKPLLRAVREAGYETPTPIQTQAIPSAIAGRDILGCAQTGTGKTAAFSLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+         R LI+ PTRELAAQ+  N   Y K+  L   ++ GG+  + Q  +L 
Sbjct: 61  QRLDADPPDEPRIRALIVSPTRELAAQIGANIGSYAKHLELWHTVIFGGVKDKPQIAELR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVL+ TPGR+LD   RG + +  +E+ V+DEAD+MLDMGF+P I+ I   +P  RQT
Sbjct: 121 RGVDVLVATPGRLLDLMGRGHIDLKRVEVFVLDEADQMLDMGFLPDIRRIVKALPSKRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   +++++   L +P  + V   S  A+  +  +   +     K  LL  LL+
Sbjct: 181 LFFSATMPSAIKELAATLLDDPVEVAVARVSEPADVDQRLY---FVDKGNKRKLLVDLLR 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  ++   ++F   K     +   L   G S  AIHGN  Q +R + L  FK G ++++V
Sbjct: 238 ADPSVSRSLVFSRTKHGANRIAKHLSAAGVSSAAIHGNKSQNARTRALEAFKGGELRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV NFD+PN  E YIHRIGRT RAG  G A +    E+  ++  I
Sbjct: 298 ATDIAARGLDISKVSHVINFDLPNVPETYIHRIGRTARAGNSGIALSFCDVEERAYLVDI 357

Query: 361 EKLIEKKVDWLN 372
           E+L+   ++ + 
Sbjct: 358 ERLLRAHIERIE 369


>gi|110598174|ref|ZP_01386451.1| Helicase-like:DEAD/DEAH box helicase-like [Chlorobium ferrooxidans
           DSM 13031]
 gi|110340188|gb|EAT58686.1| Helicase-like:DEAD/DEAH box helicase-like [Chlorobium ferrooxidans
           DSM 13031]
          Length = 418

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 156/389 (40%), Positives = 239/389 (61%), Gaps = 13/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L +   ++ ++ + GY  PTPIQ + IP+VLQ +D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MQFHSLDIIEPILKSLQEEGYTTPTPIQAEAIPIVLQGNDLLGCAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L +  +  + R  R+LIL PTRELA Q+ ++F  YG++  L   ++ GG+    Q   
Sbjct: 61  QLLSESHSNEKKRKIRSLILTPTRELAIQIGESFRAYGRHTGLNNTVIFGGVNQNPQISA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D++I TPGR+LD  N+G L + ++EI V+DEADRMLDMGFI  I+ + +++P  +
Sbjct: 121 LRNGVDIVIATPGRLLDLMNQGFLNLRDVEIFVLDEADRMLDMGFIHDIKKVLAVLPKKK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237
           Q+L FSAT+  E+ +++   L NP  + V   SST + I +H +   +     K +LL  
Sbjct: 181 QSLFFSATLPPEIVRLAGTILHNPSEVSVTPISSTVDIIQQHIY---FVDKGNKNSLLVD 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+ Q ++K  ++F   K     +   L        AIHGN  Q +R + LSNFK  T +
Sbjct: 238 ILKDQ-SIKTALVFTRTKHGADKVVKFLSHHNIRAEAIHGNKAQNARQRALSNFKNQTTR 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ +V NF++ N AE Y+HRIGRTGRAG  G A++    E+ +++
Sbjct: 297 VLVATDIAARGIDVDELEYVINFEISNIAETYVHRIGRTGRAGAKGTAYSFCDAEEKEYL 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
             IEKLI KK+  ++      N P   ID
Sbjct: 357 RDIEKLIGKKIPVID------NHPFPLID 379


>gi|325568403|ref|ZP_08144770.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
           12755]
 gi|325158172|gb|EGC70325.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
           12755]
          Length = 508

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 154/384 (40%), Positives = 236/384 (61%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS +++ +V  AG+ + TPIQ  TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKDLELSNELLTSVERAGFEEATPIQEATIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++    +++    L++ PTRELA Q  +   + GK+  + V  + GG     Q ++L+
Sbjct: 61  EKIDPANHQLQ---GLVIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIRQLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  +E LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPDVRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F++ P+ +++     TA+ I+  +V +  +  +K  ++ +LL 
Sbjct: 178 LLFSATMPPAIKNIGVKFMKEPEHVQIKAKEMTADLIDQYYVRS--KDYEKFDVMTRLLD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q + +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 236 VQ-SPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGQLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMSYLHVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       ++ + PP EK
Sbjct: 355 ENLTKKR-------MTPMRPPTEK 371


>gi|327489488|gb|EGF21281.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1058]
          Length = 523

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 149/371 (40%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ KTIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEKTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    + ++K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGIKFMKEPEHVKIAAKELTTELVDQYYIRV--KENEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|315182247|gb|ADT89160.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii NCTC 11218]
          Length = 397

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 158/374 (42%), Positives = 229/374 (61%), Gaps = 10/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV + GY KPT IQ K IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSKLGLSEALTQAVAELGYQKPTTIQTKAIPVILQGQDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L+ GR   R +  R LIL PTRELA QVAD   +YG++  LT   + GG+  +AQ ++
Sbjct: 61  HKLQ-GRETQRKKRIRALILVPTRELAIQVADKVAQYGQHTGLTTLAMYGGVEEQAQKQR 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G DVL+ TPGR+LD + +  +    +EI+V+DEADRMLDMGFI  I  I   +P   
Sbjct: 120 LIEGVDVLVATPGRLLDMYGQRAVYFEEVEIVVLDEADRMLDMGFIDSINKIIDRLPRDA 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT++ +++ +++  + +P  I +    ++   IE   +       KK ALL  L
Sbjct: 180 QYLLFSATLSHKVRDLAKTAVNDPFEISIAANQASKSNIEQWLITV--DKDKKSALLSHL 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +++     +IF   K     L   LEK+G +  A H    Q  R+++L +FK G I+ 
Sbjct: 238 I-TENNWDQALIFIETKHGAAKLASQLEKRGITAEAFHSGRSQAVRVQLLEDFKAGKIKY 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+ + ARG+DI ++  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++ 
Sbjct: 297 MIATGVGARGIDIHELSRVVNYDLPFPADEYVHRIGRTGRANAKGEAISFVSKDNFKNLC 356

Query: 359 AIEK----LIEKKV 368
            IE     LIE++V
Sbjct: 357 MIESRLGHLIERRV 370


>gi|315127484|ref|YP_004069487.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315015998|gb|ADT69336.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 415

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 176/425 (41%), Positives = 252/425 (59%), Gaps = 30/425 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P ++ A+    Y  PT IQ KTIP +L   DV G AQTGTGKTA+FVLP+L  
Sbjct: 6   FSSLALDPLLLTAIEQNNYTTPTAIQHKTIPPILAGKDVMGSAQTGTGKTAAFVLPLLHK 65

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           L       E G ARV     +IL PTRELA QV  +FEKY +  ++  AL  GG     Q
Sbjct: 66  LLNTTKKDEPGIARV-----VILTPTRELAQQVFASFEKYAQGTDIKGALAYGGASIGPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K L + A V++ TPGR+LDH  +G +++++++ LV DEADRMLDMGFI  I+ I   +P
Sbjct: 121 IKAL-KTAQVIVATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIRRILRHIP 179

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT  D + ++S+  L++P+ IEV+  +S A  +E    A      +K  L+
Sbjct: 180 GDRQTLLFSATFDDSVFELSKKLLKDPELIEVDKRNSAAVEVEQVIYAV--DEDRKRELV 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             ++  ++  +  +IF   K+    L   + K G    +IHG+  Q +R + L NFKEG+
Sbjct: 238 SHMIGMKN-WRQVLIFTRTKQMADKLAKEMCKDGLKTESIHGDKSQGARDRALHNFKEGS 296

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            +++VA+D+AARGLDIP + +V NF++P  AE+Y+HRIGRTGRAG  G A +LV+ ++  
Sbjct: 297 TRVLVATDVAARGLDIPALKYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSLDEQW 356

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            ++ IE L++ ++   WL G    LN P  K +    N ARK           DR KK  
Sbjct: 357 LLEEIEVLLDTRLAPQWLEGYEPDLNKP-PKDNRKNTNKARK-----------DRDKKRI 404

Query: 414 SSQKS 418
           + Q++
Sbjct: 405 TGQRA 409


>gi|58038681|ref|YP_190645.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58001095|gb|AAW59989.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 431

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 158/390 (40%), Positives = 233/390 (59%), Gaps = 13/390 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L L+  +  A+ + GY  PTPIQ   IP +L+  D+ G+AQTGTGKTA+F LP+L  
Sbjct: 4   FAELKLAEPIQKALAEEGYTTPTPIQAGAIPYLLEGRDLLGLAQTGTGKTAAFALPILNH 63

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R  A  +  R L+L PTRELA+Q+ ++F  Y ++   + A++ GG+    Q +   
Sbjct: 64  IFTNRRPAPPKGVRALVLAPTRELASQIGESFAAYARHMKFSYAVVFGGVGQGRQIETTR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVL+  PGR+LD   +  + ++ +EILV+DEADRMLDMGF+  IQ I +L+P  RQT
Sbjct: 124 RGVDVLVAAPGRLLDLIGQKHIDLSTLEILVLDEADRMLDMGFVRDIQRIMALLPKQRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +  ++ + L+NP  ++V   SST + I    +   +   K  AL+  LL+
Sbjct: 184 LLFSATMPPSISDLAHSLLKNPATVQVTPESSTVDRINQAVMFVDSGSKKDAALM--LLE 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S  ++   ++F   K     +   L K G    AIHGN  Q +R + ++ F+ G I+ +V
Sbjct: 242 S-PSVARAVVFTLMKHEANKVAEFLNKNGIRAEAIHGNKSQGARERAMAGFRSGAIKALV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ +V HVFN+D+PN  E+Y+HRIGRT RAGR G A +L   E    +  I
Sbjct: 301 ATDIAARGIDVDEVSHVFNYDLPNVPESYVHRIGRTARAGREGCAVSLCDAEQRAWLKDI 360

Query: 361 EKLIEKKVDWLN--------GDLSSLNPPL 382
           EK I K +  +           LS+  PP+
Sbjct: 361 EKKIGKPIPVVTDHPFHSEEARLSTQRPPV 390


>gi|255008452|ref|ZP_05280578.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313146179|ref|ZP_07808372.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313134946|gb|EFR52306.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
          Length = 427

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 153/368 (41%), Positives = 230/368 (62%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY  PTPIQ ++IP++LQ  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MTFENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K   R  + + L+L PTRELA Q+ ++FE YG+   L  A++ GG+  + Q   L 
Sbjct: 61  QKLYKTDHRKGI-KALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALR 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +L+ TPGR+LD  ++G + +N+++  V+DEADRMLDMGFI  I+ I  L+P  RQT
Sbjct: 120 GGIQILVATPGRLLDLISQGFVSLNSLDFFVLDEADRMLDMGFIHDIKRILKLLPTKRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++ ++ + L  P+++EV   SST + I       + +  +K  LL  LL+
Sbjct: 180 LFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVY--FVEKKEKKDLLIHLLK 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++++ +IF   K     L   L K G    AIHGN  Q +R + L+NFK  T++ ++
Sbjct: 238 DA-SIESVLIFTRTKYGADKLARILTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+++PN  E Y+HRIGRTGRAG  G A +    E++ ++  I
Sbjct: 297 ATDIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLKDI 356

Query: 361 EKLIEKKV 368
           +KLI K +
Sbjct: 357 QKLIGKNI 364


>gi|94266993|ref|ZP_01290640.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93452307|gb|EAT02944.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 509

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 154/374 (41%), Positives = 230/374 (61%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L+P V  AV + GY  PTPIQ   I  +L   D+ G AQTGTGKTA+F LP+L
Sbjct: 7   MHFSQLPLAPAVSQAVAEIGYETPTPIQAAAIGPLLAGRDLLGQAQTGTGKTAAFALPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           + L+  R   + P+ L+L PTRELA QVAD  + Y ++     V  L GG     Q + L
Sbjct: 67  SRLDTSR---KYPQLLVLAPTRELALQVADEIQAYSRHLPGFQVLPLYGGQNMAQQLRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG   ++ TPGRI DH  RG L ++ +  +VIDEAD ML MGF+  ++ I +  P  RQ
Sbjct: 124 QRGVQAVVGTPGRIQDHLRRGTLKLDRLTAVVIDEADEMLKMGFVDEVEKILAQTPPQRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQL 238
             LFSATMT E+ +++   L++P+ I + T ++T ETI +H ++    Q  +K   L ++
Sbjct: 184 VALFSATMTQEIMRIARRHLKDPEEIRLKTRTTTVETISQHYWLV---QGLQKLDALTRI 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L++ + ++  +IF   K   V L   L  +GF+  A++G++ Q  R K +   K+GT+ +
Sbjct: 241 LEA-EAVEAMLIFVRTKVATVELAEKLAARGFASAALNGDMTQGLREKTVEQLKDGTLDI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   VA  +++ + 
Sbjct: 300 VVATDVAARGLDVQRISHVVNYDIPYDTESYVHRIGRTGRAGRQGQAIIFVAPREMRMLH 359

Query: 359 AIEKLIEKKVDWLN 372
           AIEK   +++  L 
Sbjct: 360 AIEKATRQQIARLQ 373


>gi|90022676|ref|YP_528503.1| ATP-dependent RNA helicase DeaD [Saccharophagus degradans 2-40]
 gi|89952276|gb|ABD82291.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 595

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 149/373 (39%), Positives = 231/373 (61%), Gaps = 11/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA LGL+  ++ A+ D GY  P+PIQ K+IP +L   D+ G AQTGTGKTA+F LP+L 
Sbjct: 7   NFAQLGLNEHILKALTDVGYETPSPIQAKSIPELLAGRDILGQAQTGTGKTAAFALPILN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+  +   + P+ L+L PTRELA QVA+ F+ Y  +     +  + GG  ++ Q + L+
Sbjct: 67  NLDLSQ---KAPQVLVLAPTRELAIQVAEAFQSYAHHLPGFHILPIYGGQGYDQQIRALK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  +G L ++ +++LV+DEAD ML MGFI  ++ + +  P TRQ 
Sbjct: 124 RGVHVIVGTPGRVMDHMRKGTLKLDQLKVLVLDEADEMLRMGFIDDVEWVLTQTPPTRQI 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+ KV+  +L +P  I++   + TA+TI   +      +  K     ++L+
Sbjct: 184 ALFSATMPKEIAKVANKYLNDPALIKIEVKTQTADTIRQRYWGVSGHH--KLDATTRILE 241

Query: 241 SQ--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++  D M   IIF   K   + L   L  +G+S  A++G+I Q  R + +   K+G I +
Sbjct: 242 AEEFDAM---IIFVRTKTTTIELAEKLAARGYSSAALNGDISQNLRERTVEKLKKGQIDI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  + HV N+D+P  +E Y+HRIGRTGRAGR G+A   VA  +++ + 
Sbjct: 299 LVATDVAARGLDVDRISHVLNYDIPYDSEAYVHRIGRTGRAGRSGEAILFVAPREMRMLR 358

Query: 359 AIEKLIEKKVDWL 371
            IEK   K ++ +
Sbjct: 359 TIEKATRKPIELM 371


>gi|298369527|ref|ZP_06980844.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298282084|gb|EFI23572.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 456

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 154/366 (42%), Positives = 234/366 (63%), Gaps = 8/366 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL  ++V A+ + GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 4   FASLGLGSEIVSALTEQGYETPTPIQTAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 63

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 64  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTA 123

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 124 DLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 183

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT    ++K++++F+  P+ +EV   ++T+  +E   +A  A   KK  LL++
Sbjct: 184 RQTLLFSATFAPPIRKLAKDFMNAPEIVEVAAQNTTSSNVEQHIIAVDAL--KKRNLLER 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+     M   I+FC  K++V  +   L ++  +  +IHG+  Q+SR++ L+ FKEG+++
Sbjct: 242 LIVDLQ-MNQVIVFCKTKQSVDQVTRDLVRRNLAAQSIHGDKSQQSRLETLNAFKEGSLR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ K + K  
Sbjct: 301 VLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMF 360

Query: 358 DAIEKL 363
           +AI++L
Sbjct: 361 EAIKEL 366


>gi|54298236|ref|YP_124605.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris]
 gi|53752021|emb|CAH13447.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris]
          Length = 589

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 150/369 (40%), Positives = 232/369 (62%), Gaps = 7/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+    S  +  A+ D  ++ P+PIQ +TIPL+L+  D   +AQTGTGKTA+F LP+L 
Sbjct: 7   NFSTFNFSSALNKALEDMKFITPSPIQAQTIPLILEGRDAIALAQTGTGKTAAFALPILQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120
            L      +   + LIL PTRELA QVA+ FE   K   N+T+A+L GG  +  Q K+L 
Sbjct: 67  NLS---PEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGRILDH ++G LL+NN++  ++DEAD ML MGFI  ++ I   +P  +Q 
Sbjct: 124 SGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQM 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   +++++  +L +P  IE+   ++T ++IE  F+  +A   +K   L ++L+
Sbjct: 184 ALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFL--FASVHQKPDALIRVLE 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D  +  I+F   K +   +   L++ G    AIHG+I Q  R +I++ FK+G I ++V
Sbjct: 242 VED-YQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV N+D+P+  E Y+HRIGRTGRAGR G     V  ++ + I +I
Sbjct: 301 ATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSI 360

Query: 361 EKLIEKKVD 369
           E+   ++++
Sbjct: 361 ERHTRQRIE 369


>gi|116253340|ref|YP_769178.1| DEAD box ATP-dependent RNA helicase protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115257988|emb|CAK09086.1| putative DEAD box ATP-dependent RNA helicase protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 576

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 149/375 (39%), Positives = 234/375 (62%), Gaps = 4/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LG+S  +V  +   G   PTPIQ  +IPL+L+  D+ G+AQTGTGKTA+F LP++ 
Sbjct: 18  NFESLGVSKPIVATLFQLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 77

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L  ++ R   R  RTLIL PTREL  Q+A++ +K+ +  +L + +++GG+    Q  +L
Sbjct: 78  KLLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQLQL 137

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G D+L+ TPGR+LD  NR  + +  +  LV+DEAD+MLD+GF+  ++ I  +VP  RQ
Sbjct: 138 EKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKRQ 197

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   +  ++  +L +P ++EV  P   A+ +E  +V      + K  LL++ L
Sbjct: 198 TMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQ-YVHFVGGKNDKTELLRKSL 256

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++     ++F   K     L   LE  G+SV +IHGN  Q  R + L  F++G+I+ +
Sbjct: 257 -TENPDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKTL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DIP V HV+N+D+P   + Y+HRIGRT RAGR G A    A ++ K +  
Sbjct: 316 IATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRD 375

Query: 360 IEKLIEKKVDWLNGD 374
           IE+L+   +   +G+
Sbjct: 376 IERLMGIDITVASGE 390


>gi|309792104|ref|ZP_07686577.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
           DG6]
 gi|308225848|gb|EFO79603.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
           DG6]
          Length = 422

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 151/364 (41%), Positives = 217/364 (59%), Gaps = 6/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+FAD  L P ++  V   G+ +PTPIQ +TIPL L   ++ G+AQTGTGKTA+FVLP+L
Sbjct: 1   MNFADFALHPALMQNVSAQGFTQPTPIQAQTIPLALSGQNLIGLAQTGTGKTAAFVLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L + R R    + LI+ PTRELA Q+ D          L  A + GG+  E Q + L 
Sbjct: 61  QRLLQNRQRGT--QALIVTPTRELAEQINDTIRVLAHGTGLRSAPIYGGVGMEPQERALR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G ++++  PGR++DH  RG   ++ +++LV+DEADRMLDMGF+P IQ I S +P  RQT
Sbjct: 119 AGVEIVVACPGRLIDHLGRGSARLDGVQMLVLDEADRMLDMGFLPAIQRILSALPTRRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+  ELQ+++     + K +++      A TI H          +K ALL  LL 
Sbjct: 179 MLFSATLPAELQQLAATTAPHAKLVQIGL-VRPAHTITHAIYPVPPH--RKTALLLDLLH 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             ++  + ++F   K     L   + ++G S   +H N  Q  R   L  F++G  +++V
Sbjct: 236 KANS-GSVLVFTRTKHRANRLLQQIAREGHSAAVLHSNKSQNQRQLALDGFRDGRFRILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  + YIHRIGRTGRA R G AFTLV  ED   +  I
Sbjct: 295 ATDIAARGLDVERISHVINYDIPDTPDAYIHRIGRTGRATRSGDAFTLVTPEDASQVRQI 354

Query: 361 EKLI 364
           E+ I
Sbjct: 355 ERAI 358


>gi|81429227|ref|YP_396228.1| putative ATP-dependent RNA helicase [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78610870|emb|CAI55922.1| Putative ATP-dependent RNA helicase [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 530

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 155/384 (40%), Positives = 242/384 (63%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+  AG+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLSEPIMKAISRAGFEEATPIQGETIPLALAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+     ++    LI+ PTRELA Q  +   + G++    V ++ GG     Q + L+
Sbjct: 61  QNLDLDNPDIQ---ALIISPTRELAIQTQEELYRLGRDRKAKVQVVYGGADIRRQIRSLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LDH NR  + +++++ LV+DEAD MLDMGF+  I++I   VP  RQT
Sbjct: 118 DHPQILVGTPGRLLDHINRRTVKLDHVKTLVLDEADEMLDMGFVDDIESIIKQVPEKRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+   + K+ ++F+ NP+ I+V +   TA+ I+  +V   A+  +K  ++ +L  
Sbjct: 178 LLFSATLPAPIMKIGKSFMTNPEMIKVKSKELTADLIDQYYV--RAKDFEKFDIMTRLFD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q + +  +IF   K+ V  L   L+ +G++   IHG++ Q+ RM +L +FK G + ++V
Sbjct: 236 VQ-SPELTLIFGRTKRRVDELTRGLKARGYNAEGIHGDLSQQKRMSVLKSFKAGRLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG+ G + T V   +++++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGVSVTFVTPNEMEYLRII 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E+L +K+       +  L PP EK
Sbjct: 355 EELTKKR-------MLPLQPPSEK 371


>gi|222056385|ref|YP_002538747.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32]
 gi|221565674|gb|ACM21646.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32]
          Length = 443

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 161/409 (39%), Positives = 241/409 (58%), Gaps = 25/409 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F      P +  AV +AGYV PTPIQ + IP V+   DV G+AQTGTGKTA+FVLP+L
Sbjct: 1   MNFQLFNFHPLISAAVKEAGYVTPTPIQTQAIPPVMDGKDVMGLAQTGTGKTAAFVLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G R RVR    LI+ PTRELA Q+ +     G+   L  A + GG+    Q +KL
Sbjct: 61  QRLMEGPRGRVR---ALIIAPTRELAEQIHEAITVLGQQTRLKSATVYGGVNINPQIQKL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G ++++  PGR+LDH  +  + ++++E+LV+DEAD+M DMGF+P I+ I   +P  RQ
Sbjct: 118 RNGVEIVVACPGRLLDHMGQRTIDLSHLEVLVLDEADQMFDMGFLPDIRRILGQLPKKRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  ++++++   L NP  ++V + ++   T+ H  +   +Q+ K   LL+ L 
Sbjct: 178 TLLFSATMPPDIKRLAGEILHNPVTVQVGS-TAPPVTVNHA-IYPVSQHLKTPLLLELLR 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    ++ ++F   K     +   LEK G+   ++ GN+ Q  R   L  F++G+ Q++
Sbjct: 236 HTDK--QSVLVFTKTKHRAKRVGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGSFQIL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HV N+D+ ++AE YIHRIGRTGRA R G AFTLV  ED   +  
Sbjct: 294 VATDIAARGIDVTQISHVVNYDITDKAETYIHRIGRTGRASRSGDAFTLVTAEDTAMVRT 353

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           IEK              +L  PLE+  +   ++   N P P +   F R
Sbjct: 354 IEK--------------ALGAPLERRTVEGFDY---NVPAPHRDAEFAR 385


>gi|85705347|ref|ZP_01036446.1| putative ATP-dependent RNA helicase protein [Roseovarius sp. 217]
 gi|85670220|gb|EAQ25082.1| putative ATP-dependent RNA helicase protein [Roseovarius sp. 217]
          Length = 438

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 150/375 (40%), Positives = 235/375 (62%), Gaps = 9/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++GL   +V  + + G  +PTPIQ   IP  L   DV G+AQTGTGKT +F LP++T 
Sbjct: 4   FDEMGLPAALVRKLANEGITEPTPIQTHAIPHALNGFDVLGLAQTGTGKTMAFGLPLITR 63

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L  E G+   +  R+LIL PTRELA Q+ D+     K+  + + L++GG     Q K+LE
Sbjct: 64  LMEEPGKPAPKTIRSLILAPTRELAGQIRDSLLPLVKDSPIKIGLVVGGASINPQIKRLE 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+LD  +R  + ++    LV+DE D+MLD+GFI  ++ I  L+   RQT
Sbjct: 124 QGIDILVATPGRLLDLIDRRAVRLDAARFLVLDEGDQMLDLGFIHALRRIAGLLAAERQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQL 238
           ++FSATM  ++++++ ++L+NPKR++V+ P   A+ +  E  F+A     + K  LL +L
Sbjct: 184 MMFSATMPKQMEELAGSYLRNPKRVQVSPPGKAADKVTQEVHFIAK----ASKPDLLIEL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L    + +  ++F   K     L   LE+ GF+V  IHGN  Q  R + L  F++G +++
Sbjct: 240 LGKHKS-ELALVFGRTKHGSDKLAKRLEQAGFAVATIHGNKSQGQRERALKAFRDGQVKI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIPDV HV+N+++PN  +NY+HRIGRT RAG+ G A    A +++  + 
Sbjct: 299 LVATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGELK 358

Query: 359 AIEKLIEKKVDWLNG 373
            I+K++   +   +G
Sbjct: 359 DIQKVLGTTIPVASG 373


>gi|226942043|ref|YP_002797117.1| RhlE3 [Laribacter hongkongensis HLHK9]
 gi|226716970|gb|ACO76108.1| RhlE3 [Laribacter hongkongensis HLHK9]
          Length = 582

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 173/472 (36%), Positives = 267/472 (56%), Gaps = 22/472 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ A+ +AGY +PTPIQ + I  VL   D+   AQTGTGKTA F LP+L
Sbjct: 4   ISFADLQLVDPLLRAITEAGYTEPTPIQREAIAPVLAGRDLMAAAQTGTGKTAGFALPLL 63

Query: 61  TILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L            PR L+L PTRELAAQV ++    G +  LT  ++ GG+  + Q +
Sbjct: 64  QRLAATHPHPHPAGRPRGLVLTPTRELAAQVGESIATLGTHLPLTSLVIFGGVRVKPQIE 123

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +  D+LI TPGR++D   +  + ++ +EILV+DEADRMLDMGFI  ++ +  L+P  
Sbjct: 124 ALTQRVDILIATPGRLIDLAKQEAVDLSGVEILVLDEADRMLDMGFIRDVRKVLKLLPAE 183

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT  D+++ +++ FL +P+ +EV+ P+ST E + H         ++K  LL  
Sbjct: 184 RQNLLFSATFNDDIKALADTFLHDPQLVEVSPPNSTTELVTHHV--HLVDRNRKRELLTH 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++S+   +  ++F   K     L   L K G    AIHGN  Q +R + LS FK+G+++
Sbjct: 242 LVESRQ-WQQVLVFTRTKHGANRLAEVLAKGGIPAAAIHGNKSQGARTRALSEFKDGSLR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++  V N+++PN  E+Y+HRIGRTGRAG  G+A +LV  +++K +
Sbjct: 301 VLVATDIAARGIDISELPQVVNYELPNVPEDYVHRIGRTGRAGSPGEAVSLVCVDELKLL 360

Query: 358 DAIEKLIEKKVDWLN--GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
             IE  I + +      G  + L+ P + +   +H   R      Q   G + R +    
Sbjct: 361 ADIEAFIGRPIPQFTEPGFEADLSVPPQPLLPPRHQQGR------QDGEGGEPRGQRNKK 414

Query: 416 QKSHIPLKESEKISKLQQDIQEND-------ADSLGFRGNMPAFMLPKNRGK 460
           +  + P + ++  + L  D  E+D       A++   R   PA   P   GK
Sbjct: 415 KPHNKPARRADAPT-LPMDAPEHDSGAPAPVAEAQPPRQRKPAPGQPNPAGK 465


>gi|77409647|ref|ZP_00786319.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae COH1]
 gi|77171747|gb|EAO74944.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae COH1]
 gi|319744779|gb|EFV97119.1| ATP-dependent RNA helicase [Streptococcus agalactiae ATCC 13813]
          Length = 528

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 151/371 (40%), Positives = 233/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ AV  AG+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      ++    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L 
Sbjct: 61  NKIHTEDNTIQ---ALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGR+LD   R  L +N+IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPEARQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T   ++  +V    + ++K   + +L+ 
Sbjct: 178 LLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYV--RVKENEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLTII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  +
Sbjct: 355 ENLTKKRMTGM 365


>gi|270159019|ref|ZP_06187675.1| cold-shock DEAD box protein A [Legionella longbeachae D-4968]
 gi|289166145|ref|YP_003456283.1| ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A)
           [Legionella longbeachae NSW150]
 gi|269987358|gb|EEZ93613.1| cold-shock DEAD box protein A [Legionella longbeachae D-4968]
 gi|288859318|emb|CBJ13253.1| putative ATP-dependent RNA helicase deaD (cold-shock DEAD-box
           protein A) [Legionella longbeachae NSW150]
          Length = 569

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 154/367 (41%), Positives = 231/367 (62%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA    S  +  A+ D  +  P+PIQ +TIPL+L+  D   +AQTGTGKTA+F LP+L  
Sbjct: 8   FAAFNFSDALNRALEDMKFTTPSPIQAQTIPLLLEGRDAIALAQTGTGKTAAFALPILQN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L    + V   + LIL PTRELA QVA+ FE    N  ++TVA+L GG  +  Q K+L  
Sbjct: 68  LS---SSVHGTQALILAPTRELAIQVAEQFELLSANQRSITVAVLCGGQEYGRQLKQLRA 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRILDH ++G LL++N+   ++DEAD ML MGFI  I+ I S +P  +Q  
Sbjct: 125 GAQIVVGTPGRILDHLDKGTLLLDNLRTFILDEADEMLRMGFIEDIETIMSKLPEKKQIG 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +++++  +L NP  IE+   ++T ++IE  F+  +A   +K   L ++L  
Sbjct: 185 LFSATMPHRIRQIANTYLHNPAAIEIRAETATVKSIEQRFL--FASGHQKYDALLRVLAV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D  +  I+F   K +   +   L++QG    AIHG+I Q  R +I++ F++G I ++VA
Sbjct: 243 ED-YQGVIVFVRTKSSTEEVAEILQQQGLRAMAIHGDITQALRERIIAQFRQGAIDILVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HV N+D+P+  E Y+HRIGRTGRAGR G A   V  ++ + I +IE
Sbjct: 302 TDVAARGLDVERVTHVINYDLPHDNETYVHRIGRTGRAGRSGVAILFVTPKEGRLITSIE 361

Query: 362 KLIEKKV 368
           +   +++
Sbjct: 362 RHTRQRI 368


>gi|220913497|ref|YP_002488806.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
 gi|219860375|gb|ACL40717.1| DEAD/DEAH box helicase domain protein [Arthrobacter
           chlorophenolicus A6]
          Length = 694

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 153/375 (40%), Positives = 232/375 (61%), Gaps = 9/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+  +V+ A+ D GY KP+PIQ  TIPL+L+  DV G+AQTGTGKTA+F +P L+ 
Sbjct: 52  FADLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSR 111

Query: 63  LEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
           L +        R  + L+L PTRELA QVA+ F  Y K+ +  TV  + GG  +  Q   
Sbjct: 112 LAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAG 171

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RGA V++ TPGR++DH ++G L ++ ++ LV+DEAD ML MGF   ++ I    P  R
Sbjct: 172 LRRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQTPEDR 231

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q  LFSATM  +++++S+ +L +P  I V T +ST   I   ++       +K   + ++
Sbjct: 232 QVALFSATMPGQIRRMSKQYLNDPAEISVKTKTSTGTNIRQRYLQIMG--PQKLDAMTRI 289

Query: 239 LQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ ++   +G+I F   K    +L   L+ +GF   AI+G+I Q+ R + +   KEG I 
Sbjct: 290 LEVEEF--DGVIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRID 347

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR+G A   +   +   +
Sbjct: 348 ILVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRNGDAILFMTPREKYLL 407

Query: 358 DAIEKLIEKKVDWLN 372
            AIEK   + V+ ++
Sbjct: 408 RAIEKATRQSVEQMH 422


>gi|119477648|ref|ZP_01617798.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143]
 gi|119449151|gb|EAW30391.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143]
          Length = 441

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 168/421 (39%), Positives = 254/421 (60%), Gaps = 18/421 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ AV + GY KPT IQ +TIP +L   D+   +QTGTGKTASF+LP+L
Sbjct: 1   MTFSTLGLSDPLLQAVEELGYTKPTAIQEQTIPTILAGRDLLAASQTGTGKTASFILPVL 60

Query: 61  TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  + + R +  R L+L PTRELA QV +   +YGK  +L   +++GG+    Q + L
Sbjct: 61  QKLTGERKRRAKRLRALVLVPTRELAIQVENTIHQYGKYLSLRSMVMVGGVDAAPQKQGL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD  ++  L  + +E+L++DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IDGLDILVATPGRLLDMAHQRALYFDELEVLILDEADRMLDMGFIGDINKIIERLPTQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++DE++ +++  + +P  I +N  ++TA  I    +        K ALL  L+
Sbjct: 181 NLLFSATLSDEIRLLAKTAINDPIEISINATNATAPKISQWLITV--DKDSKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++     +IF   K     L   LEK+G    AIH    Q  R ++L++FK G I L+
Sbjct: 239 K-ENQWTQALIFIRTKHGAAKLVSQLEKRGIKAEAIHSGRSQAVRTQLLADFKSGNISLL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI D+  V N+D+P+  ++YIHRIGRTGRAG  G+A +LV+++D K + A
Sbjct: 298 VATGIAARGIDIDDLDRVVNYDLPDDDDDYIHRIGRTGRAGAIGEAVSLVSRDDFKRLCA 357

Query: 360 IEK----LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           IE+    LIE+++  ++G +++   P+  +     NH  K    P+K      +KK  S 
Sbjct: 358 IERRLNQLIERRI--IDGFIAAKEVPVSVL-----NHVGKK---PEKKVAIATQKKQASK 407

Query: 416 Q 416
           +
Sbjct: 408 K 408


>gi|296394094|ref|YP_003658978.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus
           rotundus DSM 44985]
 gi|296181241|gb|ADG98147.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM
           44985]
          Length = 548

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 147/361 (40%), Positives = 228/361 (63%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P V+ AV + GY  P+PIQ KTIP +L   DV G+A TGTGKTA+F LP+L+ 
Sbjct: 11  FADLELHPSVLKAVQEVGYETPSPIQAKTIPALLNGQDVVGLAATGTGKTAAFALPVLSR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++    ++R P+ L+L PTRELA QVA+ F +Y      ++V  + GG  +  Q + L R
Sbjct: 71  IDP---KLRRPQALVLAPTRELALQVAEAFGRYASKLPQVSVVCVYGGGSYPVQLQALAR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G+ V++ TPGR++DH  RG L + +++ LV+DEAD ML MGF   ++ + +     +Q  
Sbjct: 128 GSQVIVGTPGRVVDHLERGTLKLGDLKFLVLDEADEMLKMGFQEDVERVLASASQDKQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K+S+ +L++P  + V   ++T+E IE  +  T   + +K  LL ++L+ 
Sbjct: 188 LFSATMPGAIRKISKTYLRDPVEVTVKAATTTSENIEQRY--TLVAHHRKLDLLTRILEV 245

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      I+F   K+   ++   L  +GF+   ++G+I Q +R + +S  + G I ++VA
Sbjct: 246 EQ-FSAMIVFVRTKQATEDIAERLRARGFAARPLNGDIAQAARERTVSALRAGKIDILVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HVFN+DVP+  E+Y+HRIGRTGRAGR G ++  V   +   I AIE
Sbjct: 305 TDVAARGLDVERITHVFNYDVPHDTESYVHRIGRTGRAGRAGVSYLFVTPRERSMIGAIE 364

Query: 362 K 362
           +
Sbjct: 365 R 365


>gi|261392319|emb|CAX49846.1| putative ATP-dependent RNA helicase [Neisseria meningitidis 8013]
          Length = 457

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 162/423 (38%), Positives = 254/423 (60%), Gaps = 21/423 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +K  LL++
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVTAQNTTNANVEQHIIAV--DTIQKRNLLER 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPTQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416
           +AI+KL   K+             +E+I+  +     +    P+K+   + R++N Y S 
Sbjct: 362 EAIKKLTGNKL------------LIERIEGFEPRWWEQEGSKPEKTETSEPRQRNRYESA 409

Query: 417 KSH 419
           K+ 
Sbjct: 410 KAQ 412


>gi|330999267|ref|ZP_08322984.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
           YIT 11859]
 gi|329575125|gb|EGG56676.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
           YIT 11859]
          Length = 423

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 162/416 (38%), Positives = 239/416 (57%), Gaps = 22/416 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F  LG +P++   +   G+  PTPIQ+K IPLV Q +D+   AQTGTGKTA+FVLPML  
Sbjct: 5   FKTLGFAPQLEKLIEVNGFTSPTPIQMKAIPLVRQGYDLLAAAQTGTGKTAAFVLPMLQK 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I E    + R+PR L+L PTRELAAQV +     GK+  +  A++ GG+    Q   + 
Sbjct: 65  IIEEPTLYQKRVPRVLVLTPTRELAAQVGETILSLGKDLGVRSAVVFGGVGINPQKAAIA 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D L+ TPGR+LD  N+G   ++   IL++DEADRMLDMGF+P ++ I   +P  RQT
Sbjct: 125 KGLDFLVATPGRLLDLMNQGFADLSKTHILILDEADRMLDMGFLPDLKRILKALPPDRQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT + E++K++  FL  P+ +E+     ++   +  +    A    K  +L+ L+ 
Sbjct: 185 LLFSATFSPEIKKLASEFLNKPESVEIERNKDSSLVRQTLYRVPKAD---KHTVLRDLI- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     ++F   K     L   L K G    AIHG+  Q +R   L  FKE  + ++V
Sbjct: 241 VDNQWDQVLVFTRTKYGADKLVRHLLKDGLVAKAIHGDKSQNARTTALREFKEHKLPILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++P +AE+Y+HRIGRTGRAG  G+A++LV+ E++    AI
Sbjct: 301 ATDIAARGLDIEKLPQVVNYELPQQAEDYVHRIGRTGRAGEAGEAYSLVSPEELPQFAAI 360

Query: 361 EKLIEK--------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           EK I+K        ++D+ +  +S+   P         N  R+  P      GF R
Sbjct: 361 EKFIKKPLPLSDFPRLDYSDWKVSAPTKP--------QNKNRRPGPRRNGPAGFKR 408


>gi|53712950|ref|YP_098942.1| ATP-dependent RNA helicase DeaD [Bacteroides fragilis YCH46]
 gi|60681162|ref|YP_211306.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|253563072|ref|ZP_04840529.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_2_5]
 gi|265763047|ref|ZP_06091615.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_16]
 gi|52215815|dbj|BAD48408.1| ATP-dependent RNA helicase DeaD [Bacteroides fragilis YCH46]
 gi|60492596|emb|CAH07368.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|251946848|gb|EES87130.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_2_5]
 gi|263255655|gb|EEZ27001.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_16]
          Length = 427

 Score =  294 bits (752), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 152/368 (41%), Positives = 230/368 (62%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY  PTPIQ ++IP++LQ  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MTFENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K   R  + + L+L PTRELA Q+ ++FE YG+   L  A++ GG+  + Q   L 
Sbjct: 61  QKLYKTDHRKGI-KALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALR 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +L+ TPGR+LD  ++G + +++++  V+DEADRMLDMGFI  I+ I  L+P  RQT
Sbjct: 120 SGIQILVATPGRLLDLISQGFISLSSLDFFVLDEADRMLDMGFIHDIKRILKLLPARRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++ ++ + L  P+++EV   SST + I       + +  +K  LL  LL+
Sbjct: 180 LFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVY--FVEKKEKKDLLIHLLK 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++++ +IF   K     L   L K G    AIHGN  Q +R + L+NFK  T++ ++
Sbjct: 238 D-TSIESVLIFTRTKYGADKLARVLTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+++PN  E Y+HRIGRTGRAG  G A +    E++ ++  I
Sbjct: 297 ATDIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLKDI 356

Query: 361 EKLIEKKV 368
           +KLI K +
Sbjct: 357 QKLIGKNI 364


>gi|312868913|ref|ZP_07729097.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris
           PB013-T2-3]
 gi|311095562|gb|EFQ53822.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris
           PB013-T2-3]
          Length = 498

 Score =  294 bits (752), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 148/363 (40%), Positives = 229/363 (63%), Gaps = 6/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+  +GY + TPIQ +TIP+VL+  DV G AQTGTGKTA+F LP++
Sbjct: 1   MKFSELGLSQSLLKAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    LI+ PTRELA Q  +   + GK+ ++ V ++ GG     Q K L+
Sbjct: 61  EHVDTDNPNIQ---ALIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+ DH NR  + + +I+ LV+DEAD ML+MGF+  I+ I    P  RQT
Sbjct: 118 HHPQILVGTPGRLRDHINRHTVKLGHIQTLVLDEADEMLNMGFLEDIEAIIKETPAERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++++ E F+ NP+ + +     T + ++  +V   A+  +K  ++ +L+ 
Sbjct: 178 LLFSATMPPEIKRIGEQFMTNPETVRIKAKELTTDLVDQYYVR--ARDYEKFDIMTRLID 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     I+F   K+ V  L   L  +G++   IHG++ Q  R KI+  FK G + ++V
Sbjct: 236 VQDPDLT-IVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDRRTKIMKKFKNGDLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P+  ++Y+HRIGRTGRAG HG + T V   +++++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGTSLTFVTPNEMEYLHEI 354

Query: 361 EKL 363
           EKL
Sbjct: 355 EKL 357


>gi|192362464|ref|YP_001982184.1| Superfamily II DNA and RNA helicase [Cellvibrio japonicus Ueda107]
 gi|190688629|gb|ACE86307.1| Superfamily II DNA and RNA helicase [Cellvibrio japonicus Ueda107]
          Length = 474

 Score =  294 bits (752), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 158/373 (42%), Positives = 227/373 (60%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   ++ A+ D GY  PTPIQ + IP V+   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFESLGLRADILRAIADEGYSAPTPIQQQAIPAVINGGDILAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEK---GRA-RVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L +   G+  + R P R LIL PTRELAAQV D+   YGK   L  A++ GG+    Q
Sbjct: 61  EKLSQRDPGKTPQGRRPVRALILTPTRELAAQVHDSVRTYGKYLRLRSAVVFGGVSINPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G D+L+ TPGR+LD  N+  + + ++EILV+DEADRMLDMGFI  I+ + +L+P
Sbjct: 121 MMTLRGGVDILVATPGRLLDLVNQNAVYLQDVEILVLDEADRMLDMGFIHDIKKVLALLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT +D+++ +++  L  P  IEV   ++ +E +    +       +K  LL
Sbjct: 181 KQRQNLLFSATFSDDIKALADKLLNQPTLIEVARRNTASERVSQRVLPV--DRHRKRELL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ S    +  ++F   K     L   L+  G S  AIHGN  Q +R K L +FK G 
Sbjct: 239 SHLI-SGGNWQQVLVFTRTKHGANKLTEQLQDDGISAAAIHGNKSQGARTKALEDFKTGR 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ ++A+D+AARG+DI  + +V N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++  
Sbjct: 298 IRALIATDIAARGIDIDQLPYVVNYELPNVPEDYVHRIGRTGRAQAEGEAVSLVCVDEHS 357

Query: 356 HIDAIEKLIEKKV 368
            +  IEKLI++++
Sbjct: 358 FLRDIEKLIKREI 370


>gi|121611662|ref|YP_999469.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121556302|gb|ABM60451.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 581

 Score =  294 bits (752), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 151/373 (40%), Positives = 241/373 (64%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AV + GY  PTPIQ + IP VL  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MTFDELNLAPAILKAVHETGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPIL 60

Query: 61  TILEKGRARV-----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L +  A       +  R L+L PTRELAAQV ++  +YGK   +   ++ GG+    Q
Sbjct: 61  HRLSQNPAAKNKFGGKGIRALVLTPTRELAAQVEESVREYGKYLAIDSTVVFGGVGMAPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L+RG D+L+ TPGR+LD   +G + + ++++LV+DEADRMLDMGFI  ++ + +LVP
Sbjct: 121 IERLQRGVDILVATPGRLLDLQQQGFVDLASVQVLVLDEADRMLDMGFIQDVKKVLALVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +D++++++ + L+NP+ I+V   +ST + I    V       KK  +L
Sbjct: 181 GDKQSLLFSATFSDDIRELANSLLKNPQSIQVTPRNSTVQRIAQ--VIHPVGRGKKKQVL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + +++  D  +  ++F   K    ++   L K G +  A+HGN  Q +R + L++FK G 
Sbjct: 239 RHIIEQHDWSQV-LVFTRTKFGANSVAEFLTKNGVNAMALHGNKSQSARTQALADFKNGD 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ +VA+D+AARG+DI ++ HV N+++PN  E+Y+HRIGRTGRAG  G+A +LV  ++  
Sbjct: 298 IRALVATDIAARGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGATGQAVSLVCMDEEG 357

Query: 356 HIDAIEKLIEKKV 368
            +  IE+  ++++
Sbjct: 358 FMMDIERFTQQQI 370


>gi|319950441|ref|ZP_08024356.1| ATP-dependent DEAD-box RNA helicase DeaD [Dietzia cinnamea P4]
 gi|319435905|gb|EFV91110.1| ATP-dependent DEAD-box RNA helicase DeaD [Dietzia cinnamea P4]
          Length = 679

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 152/361 (42%), Positives = 221/361 (61%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD+GL+P V  AV D GY  P+ IQ  TIPLVL+  DV G+AQTGTGKTA+F LP+L++
Sbjct: 51  FADMGLAPAVAKAVRDVGYEVPSAIQAATIPLVLEGRDVVGLAQTGTGKTAAFALPILSL 110

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     V+ P+ LIL PTRELA QVA+    Y      + V  + GG  +  Q   L R
Sbjct: 111 IDPS---VKSPQALILAPTRELALQVAEACVTYSAGMPQVNVLPIYGGQAYGIQLSGLRR 167

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  +G L ++ +  LV+DEAD ML MGF   ++ I S  P + Q  
Sbjct: 168 GAQIIVGTPGRVIDHLKKGTLDLSGLRHLVLDEADEMLAMGFQEDVERILSDTPESTQVA 227

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++S+ +L +P  ++V + +STA TI+  +V     +  K   L ++L+ 
Sbjct: 228 LFSATMPSAIRRISQKYLTDPTEVKVASKTSTAPTIQQRYV--LVNHRDKLDALTRILEV 285

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I+F   K     L   L  +GFS   I+G+I Q  R + +   K+G   ++VA
Sbjct: 286 ED-FDAMIMFVRTKSATEELAERLRARGFSAAPINGDIPQNLRERTIEALKDGRTDILVA 344

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HV N+D+P+  E+YIHRIGRTGRAGR G A   V   + + +  IE
Sbjct: 345 TDVAARGLDVPRISHVVNYDIPHDTESYIHRIGRTGRAGRSGHALLFVTPRERRLLSQIE 404

Query: 362 K 362
           +
Sbjct: 405 R 405


>gi|254476796|ref|ZP_05090182.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
 gi|214031039|gb|EEB71874.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
          Length = 447

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 152/374 (40%), Positives = 236/374 (63%), Gaps = 5/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ +GL  K++  + + G+ +PTPIQ + IP  L   DV G+AQTGTGKTA+F +P++ 
Sbjct: 3   EFSTMGLPEKLLSRIDEMGFKEPTPIQARAIPHALNGKDVLGLAQTGTGKTAAFGVPLIA 62

Query: 62  -ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +++ GR    +  R L+L PTRELA Q+A   +   +   L   L++GG+    Q  +L
Sbjct: 63  QMMQYGRKPAAKTVRGLVLAPTRELANQIAATLKGLTEGTPLKTGLVVGGVSINPQISRL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+LI TPGR+LD  +RG L + + + LV+DEAD+MLD+GFI  ++ I+SL+P  RQ
Sbjct: 123 SRGTDILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKISSLLPQERQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  ++ +++ ++L  P RIEV+ P   A+ I    V   A+  K   L + L 
Sbjct: 183 TMLFSATMPKQMNEIANSYLNAPVRIEVSPPGKAADKITQS-VHFIAKAEKLSLLKELLA 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +D  +  ++F   K  +  L  +L   GFS  AIHGN  Q  R + L+ FK G ++++
Sbjct: 242 EHKD--ERTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALAAFKSGEVKIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIPDV  V+N+++PN  + Y+HRIGRT RAG+ G+A    A +++  + A
Sbjct: 300 VATDVAARGLDIPDVKFVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEMDELKA 359

Query: 360 IEKLIEKKVDWLNG 373
           I+K ++  +   +G
Sbjct: 360 IQKTMKITIPVASG 373


>gi|332994521|gb|AEF04576.1| ATP-dependent RNA helicase [Alteromonas sp. SN2]
          Length = 588

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 152/374 (40%), Positives = 238/374 (63%), Gaps = 11/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   ++ A+   GY KP+PIQ ++IPL+L+ HD+ G AQTGTGKTA+F LPML
Sbjct: 7   MTFKDLKLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPML 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
             ++  +   R P+ L+L PTRELA QVA+ F+ Y   ++ + V  + GG  ++ Q ++L
Sbjct: 67  ANIDPEQ---RKPQLLVLAPTRELAIQVAEAFQVYASFSHKIKVLPVYGGQSYDNQIRQL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGR++DH  R  L ++ ++ LV+DEAD ML MGFI  ++ I S  P  RQ
Sbjct: 124 KRGVQVVVGTPGRVIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPAERQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQ 237
           T LFSATM   ++K+++ +L++PK +++ +  STA TI   +C VA + +      +++ 
Sbjct: 184 TALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQVAPHHKLEALTRIME- 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            ++  D M   IIF   K   V L   L  +G+ V  ++G+I Q +R + +   K+G I 
Sbjct: 243 -VERFDGM---IIFVRTKTATVELADKLSARGYDVEPLNGDIPQNARERTVDKLKQGNID 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARGLD+  V HV N+DVP  +E+Y+HRIGRTGRAGR G A   ++  + + +
Sbjct: 299 ILVATDVVARGLDVERVSHVINYDVPYDSESYVHRIGRTGRAGRTGDAILFISHREKRML 358

Query: 358 DAIEKLIEKKVDWL 371
            +IEK  ++ ++ +
Sbjct: 359 FSIEKTTKQPIEVM 372


>gi|289167533|ref|YP_003445802.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase,
           DEAD-box family [Streptococcus mitis B6]
 gi|288907100|emb|CBJ21934.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase,
           DEAD-box family [Streptococcus mitis B6]
          Length = 521

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 149/371 (40%), Positives = 232/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNKLNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +I  L++DEAD ML+MGF+  I+ I S VP +RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIGTLILDEADEMLNMGFLEDIEAIISRVPESRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|324995328|gb|EGC27240.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK678]
          Length = 523

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 148/371 (39%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    + ++K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|209544711|ref|YP_002276940.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532388|gb|ACI52325.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 427

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 153/377 (40%), Positives = 233/377 (61%), Gaps = 19/377 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADL L+P ++ A+ + GY  PTPIQ ++IP++L+  D+ G+AQTGTGKTA+F LP+L
Sbjct: 3   MTFADLSLAPTLLRALAEEGYASPTPIQAQSIPMLLEGRDLLGMAQTGTGKTAAFALPLL 62

Query: 61  TILE-------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L        KG ARV     L+L PTREL +Q+AD FE +G++   +V  + GG+   
Sbjct: 63  HRLAMAPRPAPKGGARV-----LVLAPTRELVSQIADGFESFGRHQPPSVTTIFGGVSQV 117

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L+ G D+++  PGR+LD  ++G   ++ +E LV+DEAD+MLDMGF   I+ I + 
Sbjct: 118 HQVNALKAGVDIIVAAPGRLLDLIDQGLCDLSQLEALVLDEADQMLDMGFARPIERIVAT 177

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKK 231
           +P  R T+LFSATM   +  ++E+ L++P ++E+  PS+T + IE    FV    + +  
Sbjct: 178 LPKDRHTVLFSATMPKSIATLAESLLRDPAKVEIAPPSTTVDRIEQSVMFVDAADKKAAL 237

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
            A+L+        +   ++F  QK     +C  + + G +  A+HGN  Q  R + L  F
Sbjct: 238 LAMLR-----TPGIGQAVVFTLQKNIANEVCAFITEAGITAEALHGNKSQGQRERALDAF 292

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + GT Q++VA+D+AARG+D+  V HVFN D+P+  E+Y+HRIGRTGRAGR+G A TL   
Sbjct: 293 RSGTAQVLVATDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTGRAGRNGFAITLCDA 352

Query: 352 EDIKHIDAIEKLIEKKV 368
           E    +  +E+ I + +
Sbjct: 353 EQRAWLRDVEREIGRAL 369


>gi|291326441|ref|ZP_06124507.2| ATP-dependent RNA helicase RhlE [Providencia rettgeri DSM 1131]
 gi|291314194|gb|EFE54647.1| ATP-dependent RNA helicase RhlE [Providencia rettgeri DSM 1131]
          Length = 442

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 172/445 (38%), Positives = 257/445 (57%), Gaps = 11/445 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+DL L+ +++ A+ + GY  PTPIQ + IP VL  +D+   AQTGTGKTA F LP+L  
Sbjct: 4   FSDLALNEEILLAINELGYESPTPIQQQAIPAVLAGNDLLASAQTGTGKTAGFTLPILQK 63

Query: 62  -ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            I      + R P R LIL PTRELAAQVA+N ++Y ++  +   ++ GG+    Q  KL
Sbjct: 64  LITTPRSGKDRKPIRALILTPTRELAAQVAENVKEYSRHLRIRSFVVFGGVSINPQMMKL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+LI TPGR+LD  ++  + ++ +E+ V+DEADRMLDMGFI  I+ + + +P  RQ
Sbjct: 124 RGGVDILIATPGRLLDLEHQNAVDLSQVEVFVLDEADRMLDMGFIHDIRRVINKLPKKRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY--SKKCALLQQ 237
            LLFSAT +DE+++++   L NP  IEV   +S +E      VA Y      K+ A L  
Sbjct: 184 NLLFSATFSDEIKQLANKLLNNPVTIEVAPRNSASEQ-----VAQYVHLVDKKRKAELLS 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  ++  +  ++F   K     L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 239 FMIGRENWQQVLVFTRTKHGANRLAEHLNKDGVKAAAIHGNKSQGARTRALADFKSGDIR 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + +V NF++PN AE+Y+HRIGRTGRA   G A +LV  ++ K +
Sbjct: 299 VLVATDIAARGLDIEQLPYVVNFELPNVAEDYVHRIGRTGRAEATGMAVSLVCIDEAKLL 358

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IEKL++K +  +  +    +P + K +  Q    R       ++ G   R+ N  S K
Sbjct: 359 KDIEKLLKKSIPLMAIEGYEPDPSI-KAEPIQKTPQRNERRSGDRNQGKPPRRSNSPSSK 417

Query: 418 SHIPLKESEKISKLQQDIQENDADS 442
                  S      Q+ +++  +DS
Sbjct: 418 PSSGKGASSPWKNAQKKVKQGRSDS 442


>gi|29347295|ref|NP_810798.1| putative ATP-dependent RNA helicase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29339194|gb|AAO76992.1| putative ATP-dependent RNA helicase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 374

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 156/371 (42%), Positives = 230/371 (61%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L ++  ++ A+ + GY  PTPIQ K IP+ L + D+ G AQTGTGKTASF +P++
Sbjct: 1   MTFKELNITEPILKAIEEKGYTVPTPIQEKAIPVALAKKDILGCAQTGTGKTASFAIPII 60

Query: 61  TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L   KG  +    + LIL PTRELA Q+++  E Y K   +   ++ GG+    Q   
Sbjct: 61  QHLHLNKGEGKRSEIKALILTPTRELALQISECIEDYSKYTRIRHGVIFGGVNQRPQVDM 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD  N+G + ++NI+  V+DEADRMLDMGFI  I+ I   +P  +
Sbjct: 121 LHKGIDILVATPGRLLDLMNQGHIRLDNIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM D +  ++ + L+NP +I V   SST ++I+   +  + +  +K  LL  +
Sbjct: 181 QTLFFSATMPDTIIALTNSLLKNPVKIYVTPKSSTVDSIKQ--LVYFVEKKEKSLLLISI 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ  +  ++ +IF   K N   +   L K G    AIHGN  Q +R   L NFK G  ++
Sbjct: 239 LQKSED-RSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A T  ++E+ K I+
Sbjct: 298 MVATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGMALTFCSQEERKQIN 357

Query: 359 AIEKLIEKKVD 369
            I+KL  KK++
Sbjct: 358 DIQKLTGKKLN 368


>gi|332366034|gb|EGJ43790.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1059]
          Length = 523

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 148/371 (39%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    + ++K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|86159377|ref|YP_466162.1| DEAD/DEAH box helicase-like protein [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85775888|gb|ABC82725.1| DEAD/DEAH box helicase-like protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 487

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 154/399 (38%), Positives = 235/399 (58%), Gaps = 15/399 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL LS K + A+  AG+  PTPIQ + IP  L   DV G A TGTGKTA+F+LP++  
Sbjct: 17  FADLNLSEKTLHALERAGFEHPTPIQTQAIPPALAGRDVIGAAATGTGKTAAFLLPIIER 76

Query: 63  LEKGRARVR--------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           L     + R         PR L+L PTRELA Q+A   +++G+  ++  AL+IGG+   A
Sbjct: 77  LSGAATKDRPAAAHARPGPRALVLAPTRELAVQIAGELDRFGRGRHVRGALVIGGVGMGA 136

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q+  L R  +V++ TPGR++DH  +G   ++ +E+LV+DEADRMLDMGF P ++ I + V
Sbjct: 137 QSAAL-RDHEVIVATPGRLVDHLQQGTARLDGLEVLVLDEADRMLDMGFAPQLKRILARV 195

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQTLLFSATM  E+   +   L++P R+EV    + AE  E        +  +K  L
Sbjct: 196 PKVRQTLLFSATMAGEVADFARAHLRDPVRVEVARSGTLAERAEQRVF--LPEQREKLPL 253

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  LL+  D   + ++F   K+    +  +L++ G  V  IH +  Q  R   L  F++G
Sbjct: 254 LMALLEDDDL--STLVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFRDG 311

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             +++VA+D+AARG+D+ ++GHV NFD+P+  E+Y+HR+GRT R    G+A   V+ E++
Sbjct: 312 QYRVLVATDIAARGIDVAEIGHVVNFDLPHVPEDYVHRVGRTARMAASGRASAFVSPEEL 371

Query: 355 KHIDAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHN 391
             +  IE+L    +    +  + ++    L++ D AQ N
Sbjct: 372 DLLRDIERLTRAPIPRAEVPREHATFQAELQRADAAQAN 410


>gi|320353120|ref|YP_004194459.1| DEAD/DEAH box helicase domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320121622|gb|ADW17168.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 428

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 154/395 (38%), Positives = 235/395 (59%), Gaps = 9/395 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D   +  +  A+   G+  PTPIQ + IP VL+R D+ G+AQTGTGKTA+F+LP  
Sbjct: 1   MSFTDFHFNEHITHAISHCGFTAPTPIQQQAIPSVLERRDLLGLAQTGTGKTAAFILP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+    R +    R LI+ PTRELA Q+ D      +N  L    + GG+  +AQ  KL 
Sbjct: 59  TVQHLMRTQAHHVRALIIAPTRELAEQINDFTRAIIRNTRLKSIAVYGGVSKQAQITKLR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+++  PGR+LD  N   + ++ ++ L++DEAD M D GF+P I+ I   +P  RQ+
Sbjct: 119 GGVDIVVACPGRLLDLLNDKAVDLSRVDTLILDEADHMFDKGFLPDIRRILRRLPAERQS 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSATM DE++ ++E+ L +P  +++N P+ + ++I H   A   +  +K  LL QLL+
Sbjct: 179 LVFSATMPDEIRHLAEDILTDPVTVQIN-PTRSVQSISHRLYAV--EQEQKTDLLLQLLK 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  M   +IF   K    NL   L + GF   ++ GN+ Q  R + L  FK G   ++V
Sbjct: 236 DE-AMATTLIFTRTKHKAKNLAQKLAQSGFKATSLQGNLSQNRRQQALDGFKTGAFTILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+D+P+ AE YIHR GRTGRA R G+A T   +ED + I  I
Sbjct: 295 ATDIAARGIDVNGISHVINYDMPDTAEAYIHRTGRTGRAARTGEALTFATREDSRMIRLI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           E+ I+ +++  +GD++ L P +     +  +HA K
Sbjct: 355 ERSIDGRMN--HGDVAEL-PAVRSAVPSVRSHAGK 386


>gi|323340095|ref|ZP_08080360.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
 gi|323092472|gb|EFZ35079.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
          Length = 506

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 154/384 (40%), Positives = 235/384 (61%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGL   ++ A+  +G+ + TPIQ  TIPLVL   DV G AQTGTGKTA+F LP+L
Sbjct: 10  LKFNELGLEEDLLKAIKRSGFEEATPIQEATIPLVLAGIDVIGQAQTGTGKTAAFGLPIL 69

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    +++ PTRELA Q  +   + GK+    V ++ GG     Q K L+
Sbjct: 70  QHVDVKEEHIQ---AIVVSPTRELAIQTQEELYRLGKDKRAKVQVVYGGADIRRQIKLLK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LDH NR  + +++++ LV+DEAD MLDMGF+  I+ I   VP  RQT
Sbjct: 127 HVPQILVGTPGRLLDHINRKTVDLSHVKTLVLDEADEMLDMGFLEDIEAIIKNVPEERQT 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ + E F+  P+ +++     T + ++  FV   A+  +K  ++ ++L 
Sbjct: 187 LLFSATMPKAIRSIGEKFMHEPQVVKIKAKELTTDLVDQYFVK--AREYEKFDIMTRILD 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   +  I+F   K+ V  L   LE +G++   IHG++ Q+ RM IL  FKEG + ++V
Sbjct: 245 VQ-APELTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLTQQRRMNILKKFKEGRLDILV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG HG + T V   +++++  I
Sbjct: 304 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGISVTFVTPNEMEYLRVI 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E+L +K+       +  L PP EK
Sbjct: 364 ERLTKKR-------MEPLRPPTEK 380


>gi|269798436|ref|YP_003312336.1| DEAD/DEAH box helicase [Veillonella parvula DSM 2008]
 gi|269095065|gb|ACZ25056.1| DEAD/DEAH box helicase domain protein [Veillonella parvula DSM
           2008]
          Length = 515

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 149/366 (40%), Positives = 230/366 (62%), Gaps = 6/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L +S  V+ A+ D G+ +PTPIQ + IP+ +   D+ G AQTGTGKTA+F LP   +
Sbjct: 5   FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLP---V 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+     R  + +IL PTRELA QVA+   K  +  N+T   + GG     Q + L++ 
Sbjct: 62  LERVDGNERHVQVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKN 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++DH +RG +  ++++++V+DEAD ML+MGF+  I  I   +P   QTLL
Sbjct: 122 PQIIVATPGRLMDHMDRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +Q+++E +L  P  I +     T + IE  ++    Q  +K  +L +L   Q
Sbjct: 182 FSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIE--VQDRQKFDVLCRLFDIQ 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T +  IIF   K+ V  +   L+K+G+    IHG++ Q+ R  ++  F+EGTI ++VA+
Sbjct: 240 -TPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVAT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y HR+GRTGRAG+ G+AFT V   +++H+ AIE+
Sbjct: 299 DVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIER 358

Query: 363 LIEKKV 368
           L ++K+
Sbjct: 359 LTKRKI 364


>gi|152994240|ref|YP_001339075.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150835164|gb|ABR69140.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 418

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 166/410 (40%), Positives = 244/410 (59%), Gaps = 11/410 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  V + GY  PTPIQ+  IP VL + D+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFASLGLHQDIIQQVTELGYTTPTPIQLAAIPAVLAKKDLMAGAQTGTGKTAAFALPLL 60

Query: 61  -TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             IL+ K     +  + L+L PTRELA QV  +F KY     +   +  GG     Q   
Sbjct: 61  HQILQAKDSNTTKGIQVLVLTPTRELAQQVHASFLKYSAKLPIQSVVAYGGASINMQLDA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+L+   +  + ++ ++ LV+DEADRMLDMGFI  IQ I   +P +R
Sbjct: 121 LRQGCDVLVATPGRLLELIMKNLIDLSKLQTLVLDEADRMLDMGFIIDIQRILKKLPKSR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSAT  DE+  +S+  L++P+ IEVN+ ++TA  +E    A      +K ALL  L
Sbjct: 181 QTLFFSATFNDEIFALSKTLLKDPQLIEVNSRNTTATQVEQTIYAV--DQDRKSALLSFL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S++  +  +IF   K+    L   +EK G +  +IHG+  Q +R ++L++FK G ++ 
Sbjct: 239 IGSKN-WQQVLIFTRTKQGADELAKEMEKDGIATQSIHGDKSQGARDRVLADFKAGKVRA 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + +V N ++P  AE+YIHRIGRTGRAG  G A +LV++++   + 
Sbjct: 298 LVATDVAARGIDIEQLQYVVNHELPYNAEDYIHRIGRTGRAGSTGLAISLVSEKERYLLT 357

Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
            IEKL+ ++    WL G      P L K++ AQ         +  K+ G 
Sbjct: 358 DIEKLVGEQFVPQWLPG----FEPDLNKVNNAQKKREPSKKELRAKALGI 403


>gi|304413058|ref|ZP_07394531.1| RNA helicase [Candidatus Regiella insecticola LSR1]
 gi|304283901|gb|EFL92294.1| RNA helicase [Candidatus Regiella insecticola LSR1]
          Length = 446

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 159/371 (42%), Positives = 236/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ A+ +  Y  PTPIQ K IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 36  MSFDSLGLNADILRAITEQKYSAPTPIQEKAIPEVLAGRDLMASAQTGTGKTAGFTLPLL 95

Query: 61  TILEKGRARV--RMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L + ++ +  R P R LIL PTRELAAQ+ DN + Y +   L   ++ GG+    Q  
Sbjct: 96  QLLSENQSLIKGRRPVRALILTPTRELAAQIGDNVKNYSEFLKLRSMVVFGGVSINPQMM 155

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + +  IEILV+DEADRMLDMGFI  I+ I + +P  
Sbjct: 156 KLRGGVDILVATPGRLLDLEHQNAVDLAKIEILVLDEADRMLDMGFIHDIRRILAKLPAK 215

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +++++ +++  L NP  IEV+  ++TA+ I       +   S+K  LL  
Sbjct: 216 RQNLLFSATFSNDIKLLAKKLLNNPAYIEVSPGNTTAKHITQRV--HFVDKSRKRQLLSY 273

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++ SQ+  +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G I+
Sbjct: 274 MIGSQN-WQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIR 332

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 333 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAECSGEAISLVCVDEHKLL 392

Query: 358 DAIEKLIEKKV 368
             IE+L++ ++
Sbjct: 393 RDIERLLKNEI 403


>gi|299822345|ref|ZP_07054231.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601]
 gi|299815874|gb|EFI83112.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601]
          Length = 512

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 163/399 (40%), Positives = 240/399 (60%), Gaps = 14/399 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++ GL  KVV +V   G+ + TPIQ KTIPL L   D+ G AQTGTGKTA+F LP++  
Sbjct: 6   FSEFGLDEKVVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPIINK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++    ++    LI+ PTRELA QV++   K   + +  V  + GG     Q + L++ 
Sbjct: 66  IDQKNNNIQ---ALIIAPTRELAIQVSEELYKLSYDKHARVLAVYGGSDISRQIRSLKKN 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LD  NR  L + N+E LV+DEAD ML+MGFI  I+ I   VP  RQTLL
Sbjct: 123 PQIIVGTPGRMLDLINRRVLKLENVETLVLDEADEMLNMGFIDDIEAILKSVPSERQTLL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F+ +P+ + +     TA  IE  FV  + +  +K  +L +LL  Q
Sbjct: 183 FSATMPDPIRRIAERFMHSPELVRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  IIF   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA+
Sbjct: 241 -APELAIIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E+
Sbjct: 300 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 359

Query: 363 LIEKKVD------WLNGDLSSLNPPLEKID--IAQHNHA 393
             +K+++      W       L    EKI+  I Q N A
Sbjct: 360 TTKKRMEPLKPPTWDEAFAGQLRVAQEKIEEAITQENLA 398


>gi|332285792|ref|YP_004417703.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
 gi|330429745|gb|AEC21079.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
          Length = 550

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 150/377 (39%), Positives = 230/377 (61%), Gaps = 18/377 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ AVL AG+ +PT +Q   IP  L  HD+   +QTG+GKTA+F+LP L
Sbjct: 1   MSFDTLGLAPSLLSAVLKAGFTEPTSVQAAAIPKALAGHDLMVSSQTGSGKTAAFMLPAL 60

Query: 61  TILEKGRARVRMP-------RTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPF 112
             +        MP       + L+L PTRELA QVA+  ++YG +  +L  A+++GG+P+
Sbjct: 61  NRISN------MPPNKGSGVQVLVLTPTRELAMQVAEATKQYGAHLKDLRTAVVVGGMPY 114

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
            AQ K L R  DVL+ TPGR++DH    ++ ++ +  LV+DEADRMLDMGFI  I+ I  
Sbjct: 115 GAQLKALSRRVDVLVATPGRLIDHLQAKRVNLSTVHTLVLDEADRMLDMGFIEDIETIVG 174

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKK 231
             P  RQTLLFSAT+   + +++   +++P +IE++        I    +  YA     K
Sbjct: 175 RTPSDRQTLLFSATLDGTIARLAAKMMRDPLQIEISGQKQKHTNITQSLL--YADDNGHK 232

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL  LL+  + +   I+F + K+   +L   L  QGF+  A+HG+++QR R + L   
Sbjct: 233 MRLLDHLLRDSN-LDQAIVFTSTKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGML 291

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           ++G ++++VA+D+AARG+D+  + H  N+D+P +AE+Y+HRIGRTGRAGR G A+TL   
Sbjct: 292 QKGKLRILVATDVAARGIDVQGISHAVNYDLPMQAEDYVHRIGRTGRAGRSGLAYTLATH 351

Query: 352 EDIKHIDAIEKLIEKKV 368
            +   +  IE  I + +
Sbjct: 352 SERHKVRRIEHFIGQPI 368


>gi|325694070|gb|EGD35988.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK150]
          Length = 523

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 148/371 (39%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    + ++K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|302341870|ref|YP_003806399.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
           2075]
 gi|301638483|gb|ADK83805.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
           2075]
          Length = 573

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 153/366 (41%), Positives = 223/366 (60%), Gaps = 6/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLSP +  AV + G+  PTPIQ   IPL+L+  DV G AQTGTGKTA+F LP+L  
Sbjct: 18  FDQLGLSPLLTAAVTEQGFTSPTPIQTAMIPLMLEGRDVIGQAQTGTGKTAAFGLPLLHN 77

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +  G   V   + L+L PTRELA QVA+  + YG+     V  + GG P+  Q  +L +G
Sbjct: 78  ISPG---VGQAQALVLAPTRELAIQVAEALQGYGRKMGARVMAVYGGAPYGLQISRLRKG 134

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR+LD   +  L ++ +E +VIDEAD ML MGFI  IQ I    P  RQT L
Sbjct: 135 VDVVVGTPGRVLDLIGQKALRLDMVETVVIDEADEMLSMGFIADIQAILEATPSQRQTAL 194

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   ++++S++++  P+ + V+    T E +E  +         K A L +LL+  
Sbjct: 195 FSATLPPAIRQMSQSYMVEPQSVSVSPRQLTVEAVEQRYY--LLDERDKLAALCRLLEV- 251

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           + + + +IFC  K     L   L  +GF+  AI+G++ Q +R+++L  F+   ++L+VA+
Sbjct: 252 EPVASALIFCRTKAGTGQLADELSARGFAAEAINGDLSQEARIRVLGRFRNNQLKLLVAT 311

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI D+ HV NFD P   E Y+HRIGRTGRAGR G A +L++ +D   +  IE 
Sbjct: 312 DVAARGLDIDDISHVINFDPPQDPEVYVHRIGRTGRAGRDGVAISLLSPKDRWLLARIEA 371

Query: 363 LIEKKV 368
             + ++
Sbjct: 372 YAKARL 377


>gi|253572829|ref|ZP_04850228.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298385203|ref|ZP_06994762.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
 gi|251837561|gb|EES65653.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298262347|gb|EFI05212.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
          Length = 374

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 156/371 (42%), Positives = 230/371 (61%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L ++  ++ A+ + GY  PTPIQ K IP+ L + D+ G AQTGTGKTASF +P++
Sbjct: 1   MTFKELNITEPILKAIEEKGYTVPTPIQEKAIPVALAKKDILGCAQTGTGKTASFAIPII 60

Query: 61  TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L   KG  +    + LIL PTRELA Q+++  E Y K   +   ++ GG+    Q   
Sbjct: 61  QHLHLNKGEGKRSGIKALILTPTRELALQISECIEDYSKYTRIRHGVIFGGVNQRPQVDM 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD  N+G + ++NI+  V+DEADRMLDMGFI  I+ I   +P  +
Sbjct: 121 LHKGIDILVATPGRLLDLMNQGHIRLDNIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM D +  ++ + L+NP +I V   SST ++I+   +  + +  +K  LL  +
Sbjct: 181 QTLFFSATMPDTIIALTNSLLKNPLKIYVTPKSSTVDSIKQ--LVYFVEKKEKSLLLISI 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ  +  ++ +IF   K N   +   L K G    AIHGN  Q +R   L NFK G  ++
Sbjct: 239 LQKSED-RSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A T  ++E+ K I+
Sbjct: 298 MVATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGMALTFCSQEERKQIN 357

Query: 359 AIEKLIEKKVD 369
            I+KL  KK++
Sbjct: 358 DIQKLTGKKLN 368


>gi|90578695|ref|ZP_01234505.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein [Vibrio
           angustum S14]
 gi|90439528|gb|EAS64709.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein [Vibrio
           angustum S14]
          Length = 427

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 159/389 (40%), Positives = 228/389 (58%), Gaps = 19/389 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L P ++ A+ + GY  PT +Q + IPL L+  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFQSLNLHPNLLKALTELGYSTPTDVQQQAIPLALKGDDVMAGAQTGTGKTAAFALPLL 60

Query: 61  --------------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                         T +E         R LIL PTRELA QV D+   Y K   + VA+ 
Sbjct: 61  QRLMTLPSQAEQVSTAIENNHKSRNNIRALILTPTRELAQQVYDSITTYAKYTEIKVAVA 120

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q K L  GA++L+ TPGR+LDH   G + ++ +E  V+DEADRMLDMGFI  
Sbjct: 121 YGGTSMNVQVKALNAGAEILVATPGRLLDHVFNGSVSLSEVETFVLDEADRMLDMGFIVD 180

Query: 167 IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
           IQ I   +P  RQTL FSAT + +++K++ + L NPK +EV   ++ AET+E        
Sbjct: 181 IQRIMKRMPAERQTLFFSATFSKQVKKLAFDILTNPKMVEVTPANTAAETVEQMVYPV-- 238

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              +K  LL  L+ S++  +  ++F   K+    L   L   G    +I+G+  Q +R +
Sbjct: 239 DKHRKAELLAYLIGSRN-WRQVLVFTKTKQGSDQLAKDLGLDGIKASSINGDKSQGARQR 297

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L +FK G  +++VA+D+AARGLDI  + +V NFD+P +AE+Y+HRIGRTGRAG  G A 
Sbjct: 298 ALDDFKSGKTRVLVATDVAARGLDIEQLEYVVNFDMPFKAEDYVHRIGRTGRAGMTGHAI 357

Query: 347 TLVAKEDIKHIDAIEKLIEKKV--DWLNG 373
           TL++ ++   + AIE+L++ ++   WL G
Sbjct: 358 TLMSLDEEWALKAIEELLDSRLPQQWLEG 386


>gi|332361718|gb|EGJ39522.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1056]
          Length = 523

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 148/371 (39%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    + ++K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|294794656|ref|ZP_06759792.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
 gi|294454986|gb|EFG23359.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
          Length = 515

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 149/366 (40%), Positives = 230/366 (62%), Gaps = 6/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L +S  V+ A+ D G+ +PTPIQ + IP+ +   D+ G AQTGTGKTA+F LP   +
Sbjct: 5   FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLP---V 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+     R  + +IL PTRELA QVA+   K  +  N+T   + GG     Q + L++ 
Sbjct: 62  LERVDGNERHVQVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKN 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++DH +RG +  ++++++V+DEAD ML+MGF+  I  I   +P   QTLL
Sbjct: 122 PQIIVATPGRLMDHMDRGSIKFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +Q+++E +L  P  I +     T + IE  ++    Q  +K  +L +L   Q
Sbjct: 182 FSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIE--VQDRQKFDVLCRLFDIQ 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T +  IIF   K+ V  +   L+K+G+    IHG++ Q+ R  ++  F+EGTI ++VA+
Sbjct: 240 -TPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVAT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y HR+GRTGRAG+ G+AFT V   +++H+ AIE+
Sbjct: 299 DVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIER 358

Query: 363 LIEKKV 368
           L ++K+
Sbjct: 359 LTKRKI 364


>gi|282849975|ref|ZP_06259358.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
 gi|294792894|ref|ZP_06758041.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
 gi|282580412|gb|EFB85812.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
 gi|294456793|gb|EFG25156.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
          Length = 515

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 149/366 (40%), Positives = 230/366 (62%), Gaps = 6/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L +S  V+ A+ D G+ +PTPIQ + IP+ +   D+ G AQTGTGKTA+F LP   +
Sbjct: 5   FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLP---V 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+     R  + +IL PTRELA QVA+   K  +  N+T   + GG     Q + L++ 
Sbjct: 62  LERVDGNERHVQVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKN 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++DH +RG +  ++++++V+DEAD ML+MGF+  I  I   +P   QTLL
Sbjct: 122 PQIIVATPGRLMDHMDRGSIKFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +Q+++E +L  P  I +     T + IE  ++    Q  +K  +L +L   Q
Sbjct: 182 FSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIE--VQDRQKFDVLCRLFDIQ 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T +  IIF   K+ V  +   L+K+G+    IHG++ Q+ R  ++  F+EGTI ++VA+
Sbjct: 240 -TPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVAT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y HR+GRTGRAG+ G+AFT V   +++H+ AIE+
Sbjct: 299 DVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIER 358

Query: 363 LIEKKV 368
           L ++K+
Sbjct: 359 LTKRKI 364


>gi|327461635|gb|EGF07966.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1]
          Length = 523

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 148/371 (39%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    + ++K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|325697116|gb|EGD39003.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK160]
 gi|327473355|gb|EGF18775.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK408]
 gi|332362751|gb|EGJ40547.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK49]
          Length = 523

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 148/371 (39%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    + ++K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|313893137|ref|ZP_07826714.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442490|gb|EFR60905.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 523

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 149/366 (40%), Positives = 230/366 (62%), Gaps = 6/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L +S  V+ A+ D G+ +PTPIQ + IP+ +   D+ G AQTGTGKTA+F LP   +
Sbjct: 5   FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLP---V 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+     R  + +IL PTRELA QVA+   K  +  N+T   + GG     Q + L++ 
Sbjct: 62  LERVDGNERHVQVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKN 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++DH +RG +  ++++++V+DEAD ML+MGF+  I  I   +P   QTLL
Sbjct: 122 PQIIVATPGRLMDHMDRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +Q+++E +L  P  I +     T + IE  ++    Q  +K  +L +L   Q
Sbjct: 182 FSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIE--VQDRQKFDVLCRLFDIQ 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T +  IIF   K+ V  +   L+K+G+    IHG++ Q+ R  ++  F+EGTI ++VA+
Sbjct: 240 -TPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVAT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y HR+GRTGRAG+ G+AFT V   +++H+ AIE+
Sbjct: 299 DVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIER 358

Query: 363 LIEKKV 368
           L ++K+
Sbjct: 359 LTKRKI 364


>gi|238018738|ref|ZP_04599164.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748]
 gi|237865209|gb|EEP66499.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748]
          Length = 521

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 149/366 (40%), Positives = 230/366 (62%), Gaps = 6/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L +S  V+ A+ D G+ +PTPIQ + IP+ +   D+ G AQTGTGKTA+F LP   +
Sbjct: 5   FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLP---V 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+     R  + +IL PTRELA QVA+   K  +  N+T   + GG     Q + L++ 
Sbjct: 62  LERVDGNERHVQVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKN 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++DH +RG +  ++++++V+DEAD ML+MGF+  I  I   +P   QTLL
Sbjct: 122 PQIIVATPGRLMDHMDRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +Q+++E +L  P  I +     T + IE  ++    Q  +K  +L +L   Q
Sbjct: 182 FSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIE--VQDRQKFDVLCRLFDIQ 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T +  IIF   K+ V  +   L+K+G+    IHG++ Q+ R  ++  F+EGTI ++VA+
Sbjct: 240 -TPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVAT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y HR+GRTGRAG+ G+AFT V   +++H+ AIE+
Sbjct: 299 DVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIER 358

Query: 363 LIEKKV 368
           L ++K+
Sbjct: 359 LTKRKI 364


>gi|260769757|ref|ZP_05878690.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
 gi|260615095|gb|EEX40281.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
          Length = 397

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 164/407 (40%), Positives = 243/407 (59%), Gaps = 17/407 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV + GY KPT IQ K IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSKLGLSEALTQAVAELGYQKPTTIQTKAIPVILQGQDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L+ GR   R +  R LIL PTRELA QVAD   +YG++  LT   + GG+  +AQ ++
Sbjct: 61  HKLQ-GRETQRKKRIRALILVPTRELAIQVADKVAQYGQHTGLTTLAMYGGVEEQAQKQR 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G DVL+ TPGR+LD + +  +    +E++V+DEADRMLDMGFI  I  I   +P   
Sbjct: 120 LIEGVDVLVATPGRLLDMYGQRAVYFEEVEMVVLDEADRMLDMGFIDSINKIIDRLPRDA 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT++ +++ +++  + +P  I +    ++   IE   +       KK ALL  L
Sbjct: 180 QYLLFSATLSHKVRDLAKTAVNDPFEISIAANQASKSNIEQWLITV--DKDKKSALLSHL 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +++     +IF   K     L   LEK+G +  A H    Q  R+++L +FK G I+ 
Sbjct: 238 I-TENNWDQALIFIETKHGAAKLASQLEKRGITAEAFHSGRSQAVRVQLLEDFKAGKIKY 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+ + ARG+DI ++  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++ 
Sbjct: 297 MIATGVGARGIDIHELSRVVNYDLPFPADEYVHRIGRTGRANAKGEAISFVSKDNFKNLC 356

Query: 359 AIEK----LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            IE     LIE++V  + G       P + + I+  N+  K+  +PQ
Sbjct: 357 MIESRLGHLIERRV--VEG-----FEPKKPVPISILNYVPKSKRMPQ 396


>gi|241662507|ref|YP_002980867.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12D]
 gi|240864534|gb|ACS62195.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
          Length = 627

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 155/388 (39%), Positives = 233/388 (60%), Gaps = 23/388 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL  ++V A+ +  Y  PTP+Q + IP  L   D+   +QTG+GKTA+F+LP +  
Sbjct: 35  FAALGLDDRIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQR 94

Query: 63  L----EKGRARV---------RMPRT-------LILEPTRELAAQVADNFEKYGKNYNLT 102
           +    E  R R+         R PR        L+L PTRELA QV     +YG++    
Sbjct: 95  ISEQPEPQRPRMDGPPQRMKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRRI 154

Query: 103 V-ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
           V A ++GG+P+  Q   L R  D++I TPGR+LDH + G++ ++ +++LV DEADRMLDM
Sbjct: 155 VCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDM 214

Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
           GF   I+ I    P TRQ L+FSATM   +++++E  ++ P+RIE+         IE   
Sbjct: 215 GFSDDIEAIVGATPATRQMLMFSATMDRRIEQLAERMMREPQRIEIAAAKVDQSNIEERL 274

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
             T    S K  LL  LL+   ++K  I+F   K++  +L   L + GFS  A+HG++ Q
Sbjct: 275 HFT-DDMSHKQQLLDHLLRDA-SLKQAIVFTATKRDADSLAERLTEHGFSAGALHGDMHQ 332

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
            +R + L+  + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR
Sbjct: 333 GARNRTLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGR 392

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
            G A  LV   D      IE+ +++++D
Sbjct: 393 SGIAINLVNHNDTFQWRRIERFVDRRID 420


>gi|325690149|gb|EGD32153.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK115]
          Length = 523

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 148/371 (39%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNRIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    + ++K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|139438943|ref|ZP_01772403.1| Hypothetical protein COLAER_01409 [Collinsella aerofaciens ATCC
           25986]
 gi|133775654|gb|EBA39474.1| Hypothetical protein COLAER_01409 [Collinsella aerofaciens ATCC
           25986]
          Length = 749

 Score =  293 bits (751), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 159/402 (39%), Positives = 235/402 (58%), Gaps = 26/402 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS +++ A+ + GY  PTP+Q  +IP+VL+  D+   AQTGTGKTA+F+LP +  
Sbjct: 48  FDELGLSDEMLRAIENLGYTAPTPVQAGSIPVVLEGRDLLAAAQTGTGKTAAFLLPTMNN 107

Query: 63  LE---------------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL 101
           LE                     K     R P  L++ PTRELA Q+ +   K       
Sbjct: 108 LEHIAPPKPVRERGGRNRRRGAKKPEGNGRGPVMLVITPTRELAQQIDEVAGKIADVTGH 167

Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
               ++GG+ ++ Q   L+ G D+L+ TPGR++D   +G   ++ +++LV+DEADRMLDM
Sbjct: 168 VAVTVVGGVSYKPQTAALKYGCDILVATPGRLVDLIEQGACHLDEVKVLVLDEADRMLDM 227

Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
           GF+P ++ I    P  RQTLLFSAT+ +E      + + +P R+E+   +STA+T++  F
Sbjct: 228 GFLPAVRRIVRETPAERQTLLFSATLDEEAVGEITDLVSDPARVEIAPATSTADTVDQ-F 286

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
           V   +  +K   LL + L+ +   +  I+F   K    + C  LE++G    AIHGN  Q
Sbjct: 287 VFPVSIEAKNN-LLPEFLKKEGPERT-IVFMRTKHRADSCCRRLERKGIKAAAIHGNRSQ 344

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
             R + LS F++GT+ ++VA+D+ ARG+DI DV +V NFDVP    +YIHRIGRTGRAG 
Sbjct: 345 AQRERALSAFRDGTVDVLVATDVLARGIDISDVRYVVNFDVPAEPTDYIHRIGRTGRAGE 404

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVD-WLNGDLS-SLNPP 381
            G A T V ++D+     IEKL++K  D +  GDL    NPP
Sbjct: 405 LGWAITFVTEQDVDEFYEIEKLMDKTADIYDAGDLHVGPNPP 446


>gi|239995610|ref|ZP_04716134.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126]
          Length = 483

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 156/367 (42%), Positives = 225/367 (61%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ A+   G+  P+PIQ K IP VLQ  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPIL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+       R LIL PTRELAAQV ++   + +   L  A++ GG+    Q  KL
Sbjct: 61  QRLMEGQPVSGNNVRALILTPTRELAAQVEESIRAFSEFLPLKTAVVFGGVGINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DVLI TPGR+LD + +  +  + +E+LV+DEADRMLDMGFI  I+ +  L+P  RQ
Sbjct: 121 RKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIRRVLKLLPQERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT +DE+  +++   +NP  I     ++T E ++   V T  +  K  AL+   L
Sbjct: 181 SLLFSATFSDEITALAKTITRNPVSISTAPANTTVEAVQQHLV-TIDKSKKTTALI--CL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  ++F   K     +   L +      AIHGN  Q +R K L++FK G I+++
Sbjct: 238 IKQQKWEQVLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALADFKNGAIKVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI ++  V N D+PN A +Y+HRIGRTGRAG  G+A++ V  E+++++  
Sbjct: 298 VATDIAARGIDISELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVCAEELQNLKD 357

Query: 360 IEKLIEK 366
           IE LI+K
Sbjct: 358 IETLIQK 364


>gi|27366679|ref|NP_762206.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|37676391|ref|NP_936787.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|320158571|ref|YP_004190949.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
 gi|27358245|gb|AAO07196.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|37200933|dbj|BAC96757.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|319933883|gb|ADV88746.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
          Length = 418

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 151/376 (40%), Positives = 232/376 (61%), Gaps = 8/376 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL   +   +   G+  PTPIQ + IP +LQ  DV   AQTGTGKTA++ LP++ +
Sbjct: 5   FIELGLDSSLSDHLSQLGFNTPTPIQQQAIPHLLQGRDVLAAAQTGTGKTAAYGLPLIQM 64

Query: 63  LEK-GRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L +  R     + PR LIL PTRELA QV DN ++Y ++  L +  + GG     Q ++L
Sbjct: 65  LSRQSREETAPKHPRALILAPTRELAQQVFDNLKQYAQHTELAIVTVYGGTSIRVQQEQL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+LI TPGR+LDH    K  +N +++LV+DEADRMLDMGF+P IQ I   +P  RQ
Sbjct: 125 AKGVDILIATPGRLLDHLFTKKTSLNQLQMLVLDEADRMLDMGFLPDIQRIMKRMPEERQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    ++ ++   ++ P  ++V   +STA+T++           +K  LL  L+
Sbjct: 185 TLLFSATFETRVKALAYRLMKEPVEVQVAAANSTADTVKQMVYPV--DKKRKSELLAYLI 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S++  +  ++F   K+    L   L+  G    +I+G+  Q +R K L +FK G ++ +
Sbjct: 243 GSRN-WQQVLVFTKTKQGSDALVSELKLDGIKAASINGDKSQGARQKALDDFKSGKVRAL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  +  V NFD+P +AE+Y+HRIGRTGRAG+ G A + +++++   + A
Sbjct: 302 IATDVAARGLDIAQLEQVVNFDMPYKAEDYVHRIGRTGRAGQTGLAVSFMSRDEEYLLQA 361

Query: 360 IEKLIEKKV--DWLNG 373
           IE L++ ++  +WL G
Sbjct: 362 IENLLDTRLPQEWLAG 377


>gi|117920819|ref|YP_870011.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117613151|gb|ABK48605.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 491

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 152/363 (41%), Positives = 222/363 (61%), Gaps = 4/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL   +V AV + GY  PTPIQ K IP +L   +V   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSQLGLHSALVKAVTELGYTTPTPIQTKAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +  + R +  R +IL PTRELA QV +N  +Y K   LT   + GG+    Q K+L
Sbjct: 61  HRFADAPKIRPKRVRAIILTPTRELALQVEENINQYAKYLPLTAMAMYGGVDAAPQKKRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + + +LV+DEADRMLDMGFI  I +I   +P  RQ
Sbjct: 121 IEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINSIIEKLPEQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++ ++++ + +   IE++  S+ +  I+     T     KK ALL  L+
Sbjct: 181 NLLFSATLSKQVKALAKSAIPDAIEIEISRKSAASTHIDQWL--TTVDKDKKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q Q+     +IF   K     L   LEK+G    A H    Q  R ++L +FK G +  +
Sbjct: 239 QEQN-WSQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLIDFKAGKVSFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +A+RG+DI  +  V N+D+P+ A++YIHRIGRTGRAG  G+A + V+K+D +++ A
Sbjct: 298 VATGVASRGIDIDALARVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCA 357

Query: 360 IEK 362
           IE+
Sbjct: 358 IER 360


>gi|225159079|ref|ZP_03725387.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV2]
 gi|224802337|gb|EEG20601.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV2]
          Length = 451

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 152/372 (40%), Positives = 224/372 (60%), Gaps = 9/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL   +V  V   GYV PTP+Q++ IP+VL   D+   AQTGTGKTA+F LP+L
Sbjct: 1   MPFSKLGLPSSLVRGVQAMGYVDPTPVQLRAIPVVLAGRDLVASAQTGTGKTAAFALPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  G  R   PR L+LEPTREL AQV   F  +G+  ++   ++ GG+ +  Q   L 
Sbjct: 61  ARL--GGHRPGGPRVLVLEPTRELGAQVETAFRDFGRFTDVRSTIIHGGVGYGKQRSDLR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D++I T GR++D     ++ ++++E+L++DE DRMLDMGFI  ++ I  L P  RQT
Sbjct: 119 AGTDIVIATVGRLMDFIKEKEIRLDSVEVLILDEVDRMLDMGFINDVKRIVGLCPKQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQ-YSKKCALLQQL 238
           L FSAT+  E++ V+   LQNP+RIE+    +  E+++H  +  T+ Q +   CA+L +L
Sbjct: 179 LFFSATIPPEIEDVARFALQNPERIEIGRARTVNESVKHAIYPVTFEQKFDLLCAILDKL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  ++ IIF   K     +   L+ +  SV  +H N  Q  R++ L  FK G  ++
Sbjct: 239 -----DYESVIIFSRTKHGADRIARRLKSKKHSVAVLHANRSQNQRVEALEGFKNGRYEV 293

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARG+D+  V HV N+DVP   E+Y+HRIGRTGRA   G AF LV  ++   + 
Sbjct: 294 MVATDIAARGIDVAGVSHVINYDVPENPEDYVHRIGRTGRAMAVGDAFMLVTPDEAGDVH 353

Query: 359 AIEKLIEKKVDW 370
            I++ I  K+ +
Sbjct: 354 DIQRFIGAKIPF 365


>gi|327468980|gb|EGF14452.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK330]
          Length = 523

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 148/371 (39%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    + ++K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|187927918|ref|YP_001898405.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12J]
 gi|309781089|ref|ZP_07675827.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
 gi|187724808|gb|ACD25973.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
 gi|308920155|gb|EFP65814.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
          Length = 627

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 155/388 (39%), Positives = 233/388 (60%), Gaps = 23/388 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL  ++V A+ +  Y  PTP+Q + IP  L   D+   +QTG+GKTA+F+LP +  
Sbjct: 35  FAALGLDDRIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQR 94

Query: 63  L----EKGRARV---------RMPRT-------LILEPTRELAAQVADNFEKYGKNYNLT 102
           +    E  R R+         R PR        L+L PTRELA QV     +YG++    
Sbjct: 95  ISEQPEPQRPRMDGPPQRMKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRRI 154

Query: 103 V-ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
           V A ++GG+P+  Q   L R  D++I TPGR+LDH + G++ ++ +++LV DEADRMLDM
Sbjct: 155 VCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDM 214

Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
           GF   I+ I    P TRQ L+FSATM   +++++E  ++ P+RIE+         IE   
Sbjct: 215 GFSDDIEAIVGATPATRQMLMFSATMDRRIEQLAERMMREPQRIEIAAAKVDQSNIEERL 274

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
             T    S K  LL  LL+   ++K  I+F   K++  +L   L + GFS  A+HG++ Q
Sbjct: 275 HFT-DDMSHKQQLLDHLLRDA-SLKQAIVFTATKRDADSLAERLTEHGFSAGALHGDMHQ 332

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
            +R + L+  + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR
Sbjct: 333 GARNRTLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGR 392

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
            G A  LV   D      IE+ +++++D
Sbjct: 393 SGIAINLVNHNDTFQWRRIERFVDRRID 420


>gi|324990619|gb|EGC22555.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK353]
 gi|325688268|gb|EGD30287.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK72]
          Length = 523

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 148/371 (39%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    + ++K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRV--KENEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|260365571|ref|ZP_05778108.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260877635|ref|ZP_05889990.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260895944|ref|ZP_05904440.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308085216|gb|EFO34911.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308090909|gb|EFO40604.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308114339|gb|EFO51879.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
          Length = 417

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 161/425 (37%), Positives = 259/425 (60%), Gaps = 24/425 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++FADLG+  ++V  + +   V PTP+Q K+IP VL+  D+   AQTGTGKTA+F LP++
Sbjct: 3   VNFADLGIEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPII 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++ + R   P  LIL PTRELA QV DN  +Y ++ +L +  + GG     Q  KLE
Sbjct: 63  QAVQQ-KKRNGTPHALILVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGTSIGVQKNKLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+LI TPGR+LDH   G + ++   +LV+DEADRMLDMGF P +Q I   +P  +Q 
Sbjct: 122 EGADILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPNDKQI 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++ ++   + +P  +EV+  ++TAET++           +K  LL  L+ 
Sbjct: 182 MLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPV--DKKRKRELLAYLIG 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++  +  ++F   K+    L   L+  G    +I+G+  Q +R + L  FK+G ++ ++
Sbjct: 240 SRN-WQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++   + AI
Sbjct: 299 ATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLRAI 358

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           E L+++++  +WL G   SL   +E+++             P++  G   R+K+ SS+K 
Sbjct: 359 ETLLDQRLPQEWLEGFEPSL---IEEVE-------------PERDGGG--RRKSRSSEKR 400

Query: 419 HIPLK 423
            +  K
Sbjct: 401 KLKAK 405


>gi|28900700|ref|NP_800355.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28809080|dbj|BAC62188.1| ATP-dependent RNA helicase, DEAD box family [Vibrio
           parahaemolyticus RIMD 2210633]
          Length = 421

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 161/425 (37%), Positives = 259/425 (60%), Gaps = 24/425 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++FADLG+  ++V  + +   V PTP+Q K+IP VL+  D+   AQTGTGKTA+F LP++
Sbjct: 7   VNFADLGIEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPII 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++ + R   P  LIL PTRELA QV DN  +Y ++ +L +  + GG     Q  KLE
Sbjct: 67  QAVQQ-KKRNGTPHALILVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGTSIGVQKNKLE 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+LI TPGR+LDH   G + ++   +LV+DEADRMLDMGF P +Q I   +P  +Q 
Sbjct: 126 EGADILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPNDKQI 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++ ++   + +P  +EV+  ++TAET++           +K  LL  L+ 
Sbjct: 186 MLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPV--DKKRKRELLAYLIG 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++  +  ++F   K+    L   L+  G    +I+G+  Q +R + L  FK+G ++ ++
Sbjct: 244 SRN-WQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALI 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++   + AI
Sbjct: 303 ATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLRAI 362

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           E L+++++  +WL G   SL   +E+++             P++  G   R+K+ SS+K 
Sbjct: 363 ETLLDQRLPQEWLEGFEPSL---IEEVE-------------PERDGGG--RRKSRSSEKR 404

Query: 419 HIPLK 423
            +  K
Sbjct: 405 KLKAK 409


>gi|323352691|ref|ZP_08087661.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66]
 gi|322121727|gb|EFX93473.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66]
          Length = 523

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 148/371 (39%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    + ++K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRV--KENEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|113970505|ref|YP_734298.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113885189|gb|ABI39241.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 487

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 162/422 (38%), Positives = 244/422 (57%), Gaps = 11/422 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL   +V AV + GY  PTPIQ K IP +L   +V   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSQLGLHSALVKAVTELGYTTPTPIQTKAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +  + R +  R +IL PTRELA QV +N  +Y K   LT   + GG+    Q K+L
Sbjct: 61  HRFADAPKIRPKRVRAIILTPTRELALQVEENINQYAKYLPLTAMAMYGGVDAAPQKKRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + + +LV+DEADRMLDMGFI  I +I   +P  RQ
Sbjct: 121 IEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINSIIEKLPEQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++ ++++ + +   IE++  S+ +  I+     T     KK ALL  L+
Sbjct: 181 NLLFSATLSKQVKALAKSAIPDAIEIEISRKSAASTHIDQWL--TTVDKDKKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q ++     +IF   K     L   LEK+G    A H    Q  R ++L +FK G +  +
Sbjct: 239 Q-ENNWSQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLIDFKAGKVSFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +A+RG+DI  +  V N+D+P+ A++YIHRIGRTGRAG  G+A + V+K+D +++ A
Sbjct: 298 VATGVASRGIDIDALARVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           IE+ +   +  +  +++   P    P+  +D    + A      P K T    + + YSS
Sbjct: 358 IERRLGHVI--VRREIAGFEPKKIVPISILDFVPKS-ASTTERKPHKPTDTSAQPRPYSS 414

Query: 416 QK 417
            K
Sbjct: 415 GK 416


>gi|71282546|ref|YP_268161.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71148286|gb|AAZ28759.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 401

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 159/377 (42%), Positives = 231/377 (61%), Gaps = 13/377 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A+ D GY KPT IQ K IP+VL   D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLL 60

Query: 61  TIL-----EKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L     E G+  R +  R LIL PTRELA QV  +  +Y K  +++   + GG+  + 
Sbjct: 61  EQLNSQYKETGKKLRAKRIRALILVPTRELAVQVEASISQYAKYLDISSMAMYGGVDAQE 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++L  G D+L+ TPGR+LD  ++  L  + +++LV+DEADRMLDMGFI  I  I   +
Sbjct: 121 QKQRLIWGVDILVATPGRLLDMTHQRVLHFDELDMLVLDEADRMLDMGFIDDINKIIERL 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSATM++E++ +++  +  P  I +    ++   IE   V      + K AL
Sbjct: 181 PEHRQNLLFSATMSEEVRGLAKRTIHKPVEISIGADKASKPKIEQWLVTV--DKANKSAL 238

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  ++ +Q+  +  +IF   K     L   LEK+G    +IH    Q  R KIL++FK G
Sbjct: 239 LSHIITTQN-WQQALIFIETKHGAAKLVSQLEKRGIVAESIHSGRAQDIREKILNDFKSG 297

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+ +VA+ +AARGLDI ++  V N+D+P + ++YIHRIGRTGRAG  G+A +LV+K++ 
Sbjct: 298 KIKFLVATAIAARGLDIGELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISLVSKDNF 357

Query: 355 KHIDAIEK----LIEKK 367
           + + AIE     +IE+K
Sbjct: 358 RELCAIESRLGHIIERK 374


>gi|268318827|ref|YP_003292483.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii
           FI9785]
 gi|262397202|emb|CAX66216.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii
           FI9785]
          Length = 484

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 153/388 (39%), Positives = 240/388 (61%), Gaps = 15/388 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+++ L P+++ A+  +G+ + TPIQ KTIPLVL+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+K    ++    +I+EPTRELA Q  +   + G++    V ++ GG     Q + L+
Sbjct: 61  QNLDKQHDSIQ---AIIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGR+LDH  RG + ++ I+ +V+DEAD MLDMGFI  I++I        QT
Sbjct: 118 QTPAILVGTPGRLLDHLKRGTIDISKIKTIVLDEADEMLDMGFIQDIESILKYASSKHQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + ++ E F+ +P+ +++     TA  I+  FV   A+ ++K  +L +L+ 
Sbjct: 178 LLFSATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFV--RAKENEKFDILCRLID 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+     +IF   K+ V  L   L+ +G++   IHG++ Q  RM +L  F++G + ++V
Sbjct: 236 VQNP-DLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  I
Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTI 354

Query: 361 EKLIEKKV---------DWLNGDLSSLN 379
           E+L  KK+         +   G LS+ N
Sbjct: 355 EQLTHKKMMPLKPPTDEEAFKGQLSAAN 382


>gi|94263991|ref|ZP_01287792.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93455584|gb|EAT05769.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 509

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 152/371 (40%), Positives = 226/371 (60%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P V  AV + GY  PTPIQ   I  +L   D+ G AQTGTGKTA+F LP+L+ 
Sbjct: 9   FSQLPLAPAVSQAVAEIGYETPTPIQAAAIGPLLAGRDLLGQAQTGTGKTAAFALPLLSR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+  R   + P+ L+L PTRELA QVAD  + Y ++     V  L GG     Q + L+R
Sbjct: 69  LDTSR---KYPQLLVLAPTRELALQVADEIQAYSRHLPGFQVLPLYGGQNMAQQLRALQR 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G   ++ TPGRI DH  RG L ++ +  +VIDEAD ML MGF+  ++ I +  P  RQ  
Sbjct: 126 GVQAVVGTPGRIQDHLRRGTLKLDRLTAVVIDEADEMLKMGFVDEVEKILAQTPPQRQVA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT E+ +++   L++P+ I + T ++T ETI   +     Q  +K   L ++L++
Sbjct: 186 LFSATMTQEIMRIARRHLKDPEEIRLKTRTTTVETISQHY--WLVQGLQKLDALTRILEA 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + ++  +IF   K   V L   L  +GF+  A++G++ Q  R K +   K+GT+ ++VA
Sbjct: 244 -EAVEAMLIFVRTKVATVELAEKLAARGFASAALNGDMTQGLREKTVEQLKDGTLDIVVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   VA  +++ + AIE
Sbjct: 303 TDVAARGLDVQRISHVVNYDIPYDTESYVHRIGRTGRAGRQGQAIIFVAPREMRMLHAIE 362

Query: 362 KLIEKKVDWLN 372
           K   +++  L 
Sbjct: 363 KATRQQISRLQ 373


>gi|269217166|ref|ZP_06161020.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC
           700122]
 gi|269129303|gb|EEZ60388.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC
           700122]
          Length = 721

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 155/370 (41%), Positives = 225/370 (60%), Gaps = 4/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS K + AV+D GY +PTP+Q K IP+VL+  D+   A+TGTGKTA+F LP L  
Sbjct: 26  FNDLGLSEKALSAVVDLGYSEPTPVQEKAIPVVLEGRDLIAAAKTGTGKTAAFSLPTLDQ 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L + RA    P  +I+ PTRELA Q+AD      +  N +  +L+GG+ +  Q KKL  G
Sbjct: 86  L-RYRADDEGPLMVIVTPTRELAQQIADTCAPIARRTNHSTVVLLGGVGYGPQIKKLRAG 144

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           AD++I TPGR+LD   +G   + N+E LV+DEADRMLDMGF P +  I   +P  RQTLL
Sbjct: 145 ADIIIATPGRLLDLMRQGAADLGNVEKLVLDEADRMLDMGFWPQVSEIVDAIPAERQTLL 204

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+     KV  + L++P+ IE+      A+ I+   + T  +   K ALL   ++ +
Sbjct: 205 FSATIDRSQDKVMFSLLKDPEIIEIAHRGDVADLIDQYVIKTDRRL--KPALLNSFVRER 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+F   K    N    L K G +  AIH +  Q  R + L NF+EG   ++VA+
Sbjct: 263 GGFRV-IVFTRTKGGADNCTKRLRKIGIATEAIHADRSQAQRARALDNFREGKTHVLVAT 321

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ +RG+D+P+V +V N+D+P   E+Y+HRIGRTGRAG  G A + V  +    + +I+K
Sbjct: 322 DVLSRGIDVPEVDYVINYDLPMMPEDYVHRIGRTGRAGARGYAVSFVTPDTRNLLKSIQK 381

Query: 363 LIEKKVDWLN 372
            I++ ++ L+
Sbjct: 382 FIDQTIEVLD 391


>gi|209964196|ref|YP_002297111.1| DEAD/DEAH box helicase protein [Rhodospirillum centenum SW]
 gi|209957662|gb|ACI98298.1| DEAD/DEAH box helicase protein [Rhodospirillum centenum SW]
          Length = 528

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 148/371 (39%), Positives = 228/371 (61%), Gaps = 4/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DLGL P ++ AV + G+  PTPIQ + +P  L   DV   A TGTGKTA+FVLP L
Sbjct: 8   VSFSDLGLLPHLLKAVEELGFTTPTPIQQQALPAALTGRDVVASANTGTGKTAAFVLPSL 67

Query: 61  T-ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             I    RA     PR L+L PTRELA+QV ++     K   +    ++GG+P+  Q + 
Sbjct: 68  QRIATTARAEAAWGPRVLVLTPTRELASQVLESVRNLSKFGRIQTGTILGGMPYRQQLEM 127

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R  D+++ TPGR++DH  RG+L ++ +E+LV+DEADRMLDMGF   ++ I +  P  R
Sbjct: 128 LRRRVDLIVATPGRLMDHMERGRLDLSGVEVLVLDEADRMLDMGFREAVEFIAAACPAER 187

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLF+AT+    +++++   ++P RI+V   +     +E  ++        K  LL+ L
Sbjct: 188 QTLLFTATLDRTAERLAQTLTRDPVRIDVAGKAVVTAQVEQRWLRADG-LEHKHRLLETL 246

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  ++  K GI+F   K +   L  +L ++G     +HG++ QR R +++   ++G I +
Sbjct: 247 LGGEEFGK-GIVFIATKLDADRLADTLSEKGHKAMPLHGDMQQRDRNRVVQWLRDGRINV 305

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI D+ HV NFD+P +AE+Y+HRIGRTGRAG  G +++L  + + + + 
Sbjct: 306 IVATDVAARGIDIADLTHVINFDLPKQAEDYVHRIGRTGRAGASGVSYSLFTRMEWRQVR 365

Query: 359 AIEKLIEKKVD 369
           AIE    K  D
Sbjct: 366 AIEAYTNKAAD 376


>gi|36787780|emb|CAE16895.1| inducible ATP-independent RNA helicase [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 644

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 151/383 (39%), Positives = 240/383 (62%), Gaps = 14/383 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 12  ISFADLGLSAPILSALEDLGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117
             +    A ++ P+ L+L PTRELA QVA+   +F K+ +N N  V  L GG  ++ Q +
Sbjct: 72  HNIN---AELKAPQILVLAPTRELAVQVAEACADFSKHMRNVN--VVALYGGQRYDVQLR 126

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI S +P  
Sbjct: 127 ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMSQIPAE 186

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            QT LFSATM + +++++  F+ +P+ + +    +T   I   + + Y    +K   L +
Sbjct: 187 HQTALFSATMPEAIRRITRRFMNDPQEVRIQASVTTRPDISQSYWSVYGM--RKNEALVR 244

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L+++D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + 
Sbjct: 245 FLEAED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---I 354
           +++A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   +   +
Sbjct: 304 ILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLL 363

Query: 355 KHIDAIEKLIEKKVDWLNGDLSS 377
           ++++   KL   +V+  N +L S
Sbjct: 364 RNVERTMKLTIPEVELPNAELLS 386


>gi|153839935|ref|ZP_01992602.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|260901625|ref|ZP_05910020.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|149746542|gb|EDM57530.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|308108886|gb|EFO46426.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|328470634|gb|EGF41545.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus 10329]
          Length = 417

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 161/425 (37%), Positives = 259/425 (60%), Gaps = 24/425 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++FADLG+  ++V  + +   V PTP+Q K+IP VL+  D+   AQTGTGKTA+F LP++
Sbjct: 3   VNFADLGIEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPII 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++ + R   P  LIL PTRELA QV DN  +Y ++ +L +  + GG     Q  KLE
Sbjct: 63  QAVQQ-KKRNGTPHALILVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGTSIGVQKNKLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+LI TPGR+LDH   G + ++   +LV+DEADRMLDMGF P +Q I   +P  +Q 
Sbjct: 122 EGADILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPNDKQI 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++ ++   + +P  +EV+  ++TAET++           +K  LL  L+ 
Sbjct: 182 MLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPV--DKKRKRELLAYLIG 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++  +  ++F   K+    L   L+  G    +I+G+  Q +R + L  FK+G ++ ++
Sbjct: 240 SRN-WQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++   + AI
Sbjct: 299 ATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSQDEEYLLRAI 358

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           E L+++++  +WL G   SL   +E+++             P++  G   R+K+ SS+K 
Sbjct: 359 ETLLDQRLPQEWLEGFEPSL---IEEVE-------------PERDGGG--RRKSRSSEKR 400

Query: 419 HIPLK 423
            +  K
Sbjct: 401 KLKAK 405


>gi|257896496|ref|ZP_05676149.1| helicase [Enterococcus faecium Com12]
 gi|257833061|gb|EEV59482.1| helicase [Enterococcus faecium Com12]
          Length = 503

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 154/384 (40%), Positives = 236/384 (61%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LSP+++ +V  AG+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKELELSPELLKSVERAGFEEATPIQAETIPLALVGKDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R  ++    L++ PTRELA Q  +   + G++  + V  + GG     Q + L+
Sbjct: 61  EKIDPDRHELQ---GLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  ++ LV+DEAD ML+MGF+  I+ I   VP  RQT
Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIIFQVPDQRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F+++P  +++     TA+ I+  +V   A+  +K  ++ +L  
Sbjct: 178 LLFSATMPPAIKNIGVKFMKSPHHVKIKAKEMTADLIDQYYVR--AKEYEKFDIMTRLFD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 236 VQ-TPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       +++L PP EK
Sbjct: 355 ENLTKKR-------MTTLRPPTEK 371


>gi|146292298|ref|YP_001182722.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145563988|gb|ABP74923.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
 gi|319425598|gb|ADV53672.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 433

 Score =  293 bits (750), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 155/370 (41%), Positives = 231/370 (62%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     SP+++ A+ D GY + TPIQ + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  T-ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             ++EK    ++   R LIL PTRELAAQVADN   Y K  N +V  + GG+  E Q +K
Sbjct: 61  QKMVEKPSETLKSNARVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RGADV++ TPGR+L+H     + ++N++ LV+DEADRMLDMGF   IQ I   V   R
Sbjct: 121 LKRGADVIVATPGRLLEHLTACNVSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  ++K++ + +  P+ I V+  ++TA+T+    V    +  +K  LL +L
Sbjct: 181 QNLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQ--VVYPVEQRRKRELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F   ++    L   L   G     +HG   Q SR + L  F  G +++
Sbjct: 239 I-GKKNWQQVLVFTATREAADTLVKELNLDGIPSEVVHGEKGQGSRRRALREFVAGDVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDIP + +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLA 357

Query: 359 AIEKLIEKKV 368
            IEKLI +K+
Sbjct: 358 DIEKLIGQKI 367


>gi|161579561|ref|NP_931687.2| ATP-dependent RNA helicase DeaD [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 639

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 151/383 (39%), Positives = 240/383 (62%), Gaps = 14/383 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 7   ISFADLGLSAPILSALEDLGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117
             +    A ++ P+ L+L PTRELA QVA+   +F K+ +N N  V  L GG  ++ Q +
Sbjct: 67  HNIN---AELKAPQILVLAPTRELAVQVAEACADFSKHMRNVN--VVALYGGQRYDVQLR 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI S +P  
Sbjct: 122 ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMSQIPAE 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            QT LFSATM + +++++  F+ +P+ + +    +T   I   + + Y    +K   L +
Sbjct: 182 HQTALFSATMPEAIRRITRRFMNDPQEVRIQASVTTRPDISQSYWSVYGM--RKNEALVR 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L+++D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + 
Sbjct: 240 FLEAED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---I 354
           +++A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   +   +
Sbjct: 299 ILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLL 358

Query: 355 KHIDAIEKLIEKKVDWLNGDLSS 377
           ++++   KL   +V+  N +L S
Sbjct: 359 RNVERTMKLTIPEVELPNAELLS 381


>gi|238897556|ref|YP_002923235.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465313|gb|ACQ67087.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 598

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 148/371 (39%), Positives = 234/371 (63%), Gaps = 11/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGLSP ++ A+ D GY KP+PIQ++ IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 7   ISFSKLGLSPSILSALTDLGYEKPSPIQLECIPHLLNGSDVLGMAQTGSGKTAAFGLPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117
              +  +  ++ P+ L+L PTRELA QVA    NF KY K  N  V  L GG P+  Q K
Sbjct: 67  ---QNIKPDIKAPQILVLAPTRELAVQVAQALTNFSKYMKGIN--VLALYGGQPYHVQLK 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +G  +++ TPGR+LDH  RG L ++++  LV+DEAD ML MGFI  ++NI + +P  
Sbjct: 122 ALRQGPQIVVGTPGRLLDHLKRGTLNLSSLTGLVLDEADEMLRMGFIEDVENILAKIPAE 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            QT LFSATM D +++++  F++ PK + +++  +T   I   +   +    +K   L +
Sbjct: 182 HQTALFSATMPDAIRRITRRFMKEPKEVRIHSNVTTKPDINQSYWPVFGM--RKNQALVR 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L+ +D     IIF   K   + +  +LE  G++  A++G+++Q  R + L   K+G + 
Sbjct: 240 FLEVED-FDAAIIFVRTKNATLEVAEALEDSGYNSAALNGDMNQSLREQTLERLKDGRLD 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +
Sbjct: 299 ILIATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLL 358

Query: 358 DAIEKLIEKKV 368
             IE++I++ +
Sbjct: 359 KNIERVIKQPI 369


>gi|150002994|ref|YP_001297738.1| ATP-dependent RNA helicase DeaD [Bacteroides vulgatus ATCC 8482]
 gi|149931418|gb|ABR38116.1| ATP-dependent RNA helicase DeaD [Bacteroides vulgatus ATCC 8482]
          Length = 434

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 166/428 (38%), Positives = 254/428 (59%), Gaps = 17/428 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY  PTPIQ + IP++L+  D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   +  + + LIL PTRELA Q+ +NF++Y     +  A++ GG+P +AQ   L+
Sbjct: 61  QRLYQSDHKKGI-KALILTPTRELAIQIGENFDQYAGYTGVKHAVIFGGVPQKAQVDALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  VLI TPGR+LD  ++G + +  +E  V+DEADRMLDMGFI  I+ +  L+P  RQT
Sbjct: 120 RGVQVLIATPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++++ L NP++IEV   SST +TI     + Y    K+   L   L 
Sbjct: 180 LFFSATMPSEIEKLADSMLTNPEKIEVTPVSSTVDTIRQ---SVYFVEKKEKKDLLLHLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +++ +IF   K     L   L K      AIHGN  Q +R + L+NFK+ T ++++
Sbjct: 237 KNPEIESVLIFTRTKHGADKLARILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+++PN +E Y+HRIGRTGRAG  G A +    E++ ++  I
Sbjct: 297 ATDIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDI 356

Query: 361 EKLIEKKV------DWLN--GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG-FDRRKK 411
           +KLI  ++       W+   G+ +      E  + A+ N   + +    KS G + RRKK
Sbjct: 357 QKLIGLQIPVVKDHPWVTVEGEKAQAGKTEELKEKAKANKVYRGS----KSNGDYWRRKK 412

Query: 412 NYSSQKSH 419
              S++  
Sbjct: 413 QAQSKQGQ 420


>gi|120599766|ref|YP_964340.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120559859|gb|ABM25786.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 433

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 155/370 (41%), Positives = 232/370 (62%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     SP+++ A+ D GY + TPIQ + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  T-ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             ++EK    ++   R LIL PTRELAAQVADN   Y K  N +V  + GG+  E Q +K
Sbjct: 61  QKMVEKPSETLKSNTRVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RGADV++ TPGR+L+H     + ++N++ LV+DEADRMLDMGF   IQ I   V   R
Sbjct: 121 LKRGADVIVATPGRLLEHLTACNVSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  ++K++ + +  P+ I V+  ++TA+T+    V    +  +K  LL +L
Sbjct: 181 QNLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQ--VVYPVEQRRKRELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  ++  +  ++F   ++    L   L   G     +HG   Q SR + L  F  G +++
Sbjct: 239 IGKKN-WQQVLVFTATREAADTLVKELNLDGIPSEVVHGEKGQGSRRRALREFVAGDVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDIP + +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLA 357

Query: 359 AIEKLIEKKV 368
            IEKLI +K+
Sbjct: 358 DIEKLIGQKI 367


>gi|262283179|ref|ZP_06060946.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA]
 gi|262261431|gb|EEY80130.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA]
          Length = 523

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 147/371 (39%), Positives = 234/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQ---ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    + ++K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|21673860|ref|NP_661925.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
 gi|21646994|gb|AAM72267.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
          Length = 414

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 154/370 (41%), Positives = 227/370 (61%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LG+   +  A+ + GY  PTPIQ + IP++L+ +D+   AQTGTGKTA+F LP+L
Sbjct: 1   MPFSALGIIDHLRKALAEEGYNSPTPIQKEAIPVILEGNDLLACAQTGTGKTAAFALPVL 60

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L + R     R  R L+L PTRELA Q+ ++F  YG++  L   ++ GG+    Q  +
Sbjct: 61  QRLHQSRMHGEKRKIRCLVLTPTRELAIQIGESFTAYGRHTGLINTVIFGGVNQNPQTAR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+LD   +G L + +IE  V+DEADRMLDMGFI  I+ + +++P  R
Sbjct: 121 LVRGVDILVATPGRLLDLIGQGHLHLRDIEYFVLDEADRMLDMGFIHDIRRVLAVLPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+ K+S   L NPK + V   SST E I    +  +     K +LL  L
Sbjct: 181 QSLFFSATMPPEIIKLSAAILHNPKEVMVTPVSSTVEIINQQIL--FVDRENKNSLLAHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ ++ +++ ++F   K     +   L     +  AIHGN  Q +R + L NFK    ++
Sbjct: 239 LKERN-IESALVFTRTKHGADKVARFLAHHDITAEAIHGNKSQNARQRALGNFKTRQTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI ++ +V N D+PN  E Y+HRIGRTGRAG  G A++    E+  ++ 
Sbjct: 298 LVATDIAARGIDIDELEYVINIDLPNIPETYVHRIGRTGRAGNRGAAYSFCNAEEKAYLR 357

Query: 359 AIEKLIEKKV 368
            IEKLI +K+
Sbjct: 358 DIEKLIARKI 367


>gi|54293256|ref|YP_125671.1| hypothetical protein lpl0304 [Legionella pneumophila str. Lens]
 gi|53753088|emb|CAH14535.1| hypothetical protein lpl0304 [Legionella pneumophila str. Lens]
          Length = 414

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 161/372 (43%), Positives = 228/372 (61%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L   +  AV + GY  PT IQ+K IPL+L  HD+ G AQTGTGKTASFVLP+L
Sbjct: 1   MSFKQLALIEPLNRAVSELGYTTPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              + G+     P   + LIL PTRELA QV ++  +YGK   L  A++ GG+    Q K
Sbjct: 61  Q--KAGQQTPASPNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIK 118

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L+ G ++L+ TPGR+LD + +  +  + I+ LV+DEADRMLDMGFI  I+ I  L+P  
Sbjct: 119 QLDSGLEILVATPGRLLDLYQQRAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLK 178

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT T E++ ++ N L     I++   ++  +TI+    +     + K ALL  
Sbjct: 179 RQNLLFSATFTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSV--DRNHKLALLSH 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL  ++     ++F   K     L   L +      AIHGN  Q  R K L++FK G +Q
Sbjct: 237 LLH-KNNWGQTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKVQ 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++A+D+AARG+DI  +  V NFD+P+  E+Y+HRIGRTGRAG  G A +LV+ E+IK +
Sbjct: 296 TLIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKLL 355

Query: 358 DAIEKLIEKKVD 369
            +IEKLI +K++
Sbjct: 356 LSIEKLINQKLE 367


>gi|253991496|ref|YP_003042852.1| ATP-dependent RNA helicase DeaD [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638374|emb|CAR66996.1| cold-shock dead box protein a (ec 3.6.1.-) (atp-dependent rna
           helicas dead) [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782946|emb|CAQ86111.1| cold-shock dead box protein A [Photorhabdus asymbiotica]
          Length = 635

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 151/383 (39%), Positives = 240/383 (62%), Gaps = 14/383 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 12  ISFADLGLSAPILSALEDLGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117
             +    A ++ P+ L+L PTRELA QVA+   +F K+ +N N  V  L GG  ++ Q +
Sbjct: 72  HNIN---AELKAPQILVLAPTRELAVQVAEACADFSKHMRNVN--VVALYGGQRYDVQLR 126

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI S +P  
Sbjct: 127 ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMSQIPAE 186

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            QT LFSATM + +++++  F+ +P+ + +    +T   I   + + Y    +K   L +
Sbjct: 187 HQTALFSATMPEAIRRITRRFMNDPQEVRIQASVTTRPDISQSYWSVYGM--RKNEALVR 244

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L+++D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + 
Sbjct: 245 FLEAED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---I 354
           +++A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   +   +
Sbjct: 304 ILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLL 363

Query: 355 KHIDAIEKLIEKKVDWLNGDLSS 377
           ++++   KL   +V+  N +L S
Sbjct: 364 RNVERTMKLTIPEVELPNAELLS 386


>gi|224368898|ref|YP_002603060.1| RhlE1 [Desulfobacterium autotrophicum HRM2]
 gi|223691615|gb|ACN14898.1| RhlE1 [Desulfobacterium autotrophicum HRM2]
          Length = 427

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 157/366 (42%), Positives = 228/366 (62%), Gaps = 4/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V AV   GY  P+PIQ++ IP VL+  DV   AQTGTGKT  F LP+L
Sbjct: 20  MTFSTLGLSAPIVKAVAGQGYETPSPIQVRAIPAVLKGRDVMAAAQTGTGKTLVFTLPVL 79

Query: 61  TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L K    +    R L+L PTRELA Q+ ++   +G++ +L    + GG+    Q  KL
Sbjct: 80  ERLSKLAPVQANQVRALVLVPTRELAVQIGESVTTFGRHLHLRSTAVFGGVKINPQMMKL 139

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR+LD  ++  +  + +E+LV+DEADRML+MGFI  I  I +L+P  RQ
Sbjct: 140 RGGVDVLVATPGRLLDLHSKNAVKFDRLEVLVLDEADRMLNMGFIHDIGKIIALLPNQRQ 199

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT  DE++ ++   L +P  I V  P+S  + I+  +V    Q +KK ALL +L+
Sbjct: 200 TLMFSATFPDEIRDLARGLLHDPVEISVAPPNSVLKIIKQ-WVYPVDQ-NKKSALLSKLI 257

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  ++F   K     L   LEK+G    AIHG+  Q +R K L NFK+GT++++
Sbjct: 258 -CDNQWEQVLVFSKTKNGADRLVRHLEKEGIDAAAIHGDKSQGARTKALENFKKGTVRIL 316

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+P+  E+Y+H +GRTGRAG  G+  +LV  ++ + +  
Sbjct: 317 VATDIAARGLDIYQLPQVVNFDLPHVKEDYVHLMGRTGRAGAPGQVISLVCADEFQQLSD 376

Query: 360 IEKLIE 365
           IE+LI+
Sbjct: 377 IERLIK 382


>gi|217968880|ref|YP_002354114.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
 gi|217506207|gb|ACK53218.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
          Length = 441

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 153/371 (41%), Positives = 225/371 (60%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +LGL+ +++ AV   GY  PTP+Q + IP  +   D+   + TG+GKTA+F LP L
Sbjct: 1   MNFENLGLAEELLKAVASTGYTTPTPVQQRAIPAAIAGRDLLVSSHTGSGKTAAFTLPAL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
             I+++  A    PR L+L PTRELA QV    + YGK    L  A L+GG P  AQ K+
Sbjct: 61  NRIIDRRPAPGSGPRVLVLTPTRELAQQVEKAVQTYGKALRWLNTACLVGGAPMFAQIKQ 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+R  DV++ TPGR+LDH  R K+ ++++E+L++DEADRMLDMGF   I  I +  P  R
Sbjct: 121 LQRQCDVVVATPGRLLDHLTRRKIKLSDVEVLILDEADRMLDMGFAEDIDAIVAATPAKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQQ 237
           QTLLFSAT+   +  ++    ++ +RIE+         IE   +  +A     K  LL  
Sbjct: 181 QTLLFSATLDGVVGSMATRMTRDAERIEIEVAQEDRGQIEQRLM--FADDLGHKSRLLHA 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL  +D M   ++F   K++   L  +L+++G S  A+HG++ Q  R + L   ++G I 
Sbjct: 239 LL-GEDGMNQAVVFTATKRSADELSLALQEKGISAAALHGDMHQTQRNRTLDRLRQGRIG 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+  + HV NFD P +AE+Y+HRIGRTGRAGR G A TL    +   I
Sbjct: 298 VLVATDVAARGIDVAGISHVINFDPPRQAEDYVHRIGRTGRAGRDGIAITLSGPRETGLI 357

Query: 358 DAIEKLIEKKV 368
            AIE+    ++
Sbjct: 358 RAIERFTGDRL 368


>gi|189499774|ref|YP_001959244.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium
           phaeobacteroides BS1]
 gi|189495215|gb|ACE03763.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeobacteroides
           BS1]
          Length = 591

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 146/371 (39%), Positives = 228/371 (61%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS +V+ A+   GY  PTP+Q++TIP++L+  DV G AQTGTGKTA+F LP+L+ 
Sbjct: 14  FKDLGLSGQVLDALEKVGYETPTPVQLQTIPIILKGSDVLGQAQTGTGKTAAFALPLLST 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++   A    P+ L+L PTRELA QVA+ F++Y     +  V  + GG  +  Q ++L R
Sbjct: 74  IDLSNAS---PQVLVLTPTRELALQVAEAFQRYAACMEDFHVLPIYGGQDYSGQLRRLRR 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  R  L ++ ++ LV+DEAD ML MGF+  ++ I    P TRQ  
Sbjct: 131 GVHVVVGTPGRVMDHIRRQTLNLDGLKTLVLDEADEMLRMGFVDDVEWILEKTPATRQVA 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+++++  +L++   + + + SST E+    F+     +  K   L ++L+ 
Sbjct: 191 LFSATMPSEIRRITRKYLRDFTEVAIKSKSSTVESTTQRFLPVSGHH--KLDALTRILEI 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      IIF   K   V L   L  +G++  A++G++ Q  R K +  FK+    +++A
Sbjct: 249 EH-YDGVIIFVRTKTQTVELSEKLRARGYASAALNGDMMQNHREKTVGQFKKSVYNILIA 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   V   ++  +  IE
Sbjct: 308 TDVAARGLDVERISHVINYDIPTDTESYVHRIGRTGRAGRSGEAILFVTPREMSMLRTIE 367

Query: 362 KLIEKKVDWLN 372
           + I K++D + 
Sbjct: 368 RAIRKRIDRME 378


>gi|163848628|ref|YP_001636672.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222526563|ref|YP_002571034.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163669917|gb|ABY36283.1| DEAD/DEAH box helicase domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450442|gb|ACM54708.1| DEAD/DEAH box helicase domain protein [Chloroflexus sp. Y-400-fl]
          Length = 552

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 144/367 (39%), Positives = 226/367 (61%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  +V  +   GY +PTPIQ + IPL+L   DV   AQTGTGKTA+F LPM+  
Sbjct: 4   FAELGLSDALVSTLSGLGYDEPTPIQAQAIPLLLAGRDVIAQAQTGTGKTAAFALPMIER 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +        + + L+L PTRELA QVA+   +YG++ +L V  + GG P E Q + L +G
Sbjct: 64  VTDAL----VVQALVLAPTRELAVQVAEAIHRYGRHRSLRVLPIYGGQPIERQLRGLAQG 119

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+LDH  RG L  +++ ++V+DEAD MLDMGF   ++ I  L P  RQT L
Sbjct: 120 TQVVVGTPGRVLDHLKRGSLRFDHLRMVVLDEADEMLDMGFAEELEAILQLTPTERQTAL 179

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +Q ++  + + P R+ +     T   I   +    A+   K   L ++L + 
Sbjct: 180 FSATLPPAVQNLTLRYTRQPVRVSIAAEQLTTPRIRQTYYEVLAR--DKLDALCRVLDA- 236

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  +  I+FC  ++   ++   L+ +G++  ++HG++ Q +R +++  F+EG + ++VA+
Sbjct: 237 EMPQLAIVFCRTRQEADDIGERLQGRGYAAESLHGDLSQAARDRVMRRFREGQLDVLVAT 296

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI +V HV N+DVP   E+Y+HRIGRTGRAGR G A T +   + + +  IE+
Sbjct: 297 DVAARGLDIAEVSHVINYDVPTDPESYVHRIGRTGRAGREGVAITFITPRERRMLQIIER 356

Query: 363 LIEKKVD 369
           +   +++
Sbjct: 357 VTRTRIE 363


>gi|153874150|ref|ZP_02002476.1| ATP-dependent RNA helicase RhlE [Beggiatoa sp. PS]
 gi|152069386|gb|EDN67524.1| ATP-dependent RNA helicase RhlE [Beggiatoa sp. PS]
          Length = 441

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 149/366 (40%), Positives = 219/366 (59%), Gaps = 7/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L P ++ A+   GY  PT +Q + IP VL   D+   A TGTGKTA+FVLP L
Sbjct: 1   MSFEEFNLHPIILKAIQQCGYTTPTGVQAEAIPKVLNGSDLIASANTGTGKTAAFVLPAL 60

Query: 61  TILEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L     RV+     P  L+L PTRELA Q++     YGKN       L+GG+P+E Q 
Sbjct: 61  QRLTNKEHRVKKQNGKPSVLVLTPTRELANQISQAIRNYGKNLRFFSTNLVGGMPYEPQL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L R  D+++ TPGR+LD   R  + ++ + +LV+DEADRMLDMGF+  +  I S  P 
Sbjct: 121 RALSRPIDIVVATPGRLLDLVERRNIDLSGVNMLVLDEADRMLDMGFVDEVNKIASFTPE 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           TRQTLLFSAT  + +  ++   L++P+RI+V +  +     +   +A    +  K  LL 
Sbjct: 181 TRQTLLFSATWDNTMASLARRLLKDPERIQVESQVTQNNIEQRLHIAD--DFKHKNRLLL 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +L +++ +   IIF   K+   +L   L+ QG S  A+HG++ Q +R + L N + G +
Sbjct: 239 HVLDNEE-LTQAIIFSATKQGANDLAQELKAQGHSAAALHGDMKQGARNRTLMNLRRGKL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+D+AARG+D+  V HV NFD+P  AE+Y+HRIGRTGRAG  G A +    +D +H
Sbjct: 298 RLLVATDVAARGIDVTTVTHVINFDLPRFAEDYVHRIGRTGRAGAAGTAISFALPDDARH 357

Query: 357 IDAIEK 362
           +  IE+
Sbjct: 358 LARIER 363


>gi|238760236|ref|ZP_04621381.1| DEAD/DEAH box helicase domain protein [Yersinia aldovae ATCC 35236]
 gi|238701559|gb|EEP94131.1| DEAD/DEAH box helicase domain protein [Yersinia aldovae ATCC 35236]
          Length = 660

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 145/364 (39%), Positives = 233/364 (64%), Gaps = 6/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  ++ A+ D GY KP+PIQ++ IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 9   FADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHN 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++     ++ P+ L+L PTRELA QVA     + K+ + + V  L GG  ++ Q + L +
Sbjct: 69  IDP---TLKAPQVLVLAPTRELAIQVAQALTDFSKHMSGVNVVALYGGQRYDVQLRALRQ 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + +P   QT 
Sbjct: 126 GPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPAEHQTA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   F      Y+KK AL+ + L+S
Sbjct: 186 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSFWRVGGGYNKKEALV-RFLES 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 245 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLDRLKDGRLDILIA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  +E
Sbjct: 304 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNVE 363

Query: 362 KLIE 365
           + ++
Sbjct: 364 RTMK 367


>gi|293393148|ref|ZP_06637463.1| ATP-dependent RNA helicase DeaD [Serratia odorifera DSM 4582]
 gi|291424294|gb|EFE97508.1| ATP-dependent RNA helicase DeaD [Serratia odorifera DSM 4582]
          Length = 642

 Score =  293 bits (749), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 149/377 (39%), Positives = 237/377 (62%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 9   FADLGLSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHN 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           L+   A ++ P+ L+L PTRELA QVA+    + K+ N + V  L GG  ++ Q + L +
Sbjct: 69  LD---ASLKAPQILVLAPTRELAVQVAEAMTDFSKHMNGVNVVALYGGQRYDVQLRALRQ 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 126 GPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQTA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +    AQ  +K   L + L++
Sbjct: 186 LFSATMPEAIRRITRRFMKEPQEVRIQSSITTRPDISQSYWT--AQGMRKNEALVRFLEA 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G+S  A++G+++Q  R + L   K+G + +++A
Sbjct: 244 ED-FDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 303 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 362

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 363 RTMKLTIPEVELPNAEL 379


>gi|323140806|ref|ZP_08075722.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium sp.
           YIT 12067]
 gi|322414722|gb|EFY05525.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium sp.
           YIT 12067]
          Length = 529

 Score =  293 bits (749), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 146/368 (39%), Positives = 224/368 (60%), Gaps = 13/368 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L  K+V A+ D G+ +P+PIQ  TIPLVL+ +DV G AQTGTGKTA+F +P++  
Sbjct: 8   FGSLELDKKIVTALTDMGFEEPSPIQAATIPLVLEGNDVIGQAQTGTGKTAAFGIPLVQA 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +       +  + LI+ PTRELA QVA+   K G+   +    + GG P E Q + L   
Sbjct: 68  ITD----FKHIQALIMTPTRELAIQVAEEVGKIGRTRRVRALPVYGGQPIERQIRALRNN 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++I TPGR++DH NRG + +++I+ LV+DEAD MLDMGF+  I+ I   +P  RQTLL
Sbjct: 124 VQIVIGTPGRLIDHINRGTIRLDHIKFLVLDEADEMLDMGFVDDIEEIMRSLPVERQTLL 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +  +++ +++ PK + ++    T   IE  +  T  +    C LL       
Sbjct: 184 FSATMPRPILSLTKKYMKAPKNVTISKEELTVPLIEQYYFETKDKIEGLCRLL------- 236

Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           D   +G  IIFC  KK V +L  +L  +G+    +HG++ Q  R +++  F+EG + +++
Sbjct: 237 DAEIDGKLIIFCRTKKGVDDLSIALSSRGYMAEGLHGDLSQNQRDRVMKKFREGAVDVLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HV NFD+P   E+Y+HRIGRTGRAG  G A T +   + + +  I
Sbjct: 297 ATDVAARGIDVDNITHVINFDIPQDPESYVHRIGRTGRAGNTGVAMTFITPREFRQLKLI 356

Query: 361 EKLIEKKV 368
           E+ ++ K+
Sbjct: 357 ERTVKTKI 364


>gi|261820134|ref|YP_003258240.1| ATP-dependent RNA helicase DeaD [Pectobacterium wasabiae WPP163]
 gi|261604147|gb|ACX86633.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 632

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 147/377 (38%), Positives = 238/377 (63%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FSDLGLSAPIINALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFALPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   +  ++ P+ L+L PTRELA QVA+    + K+ + + V  L GG  ++ Q + L  
Sbjct: 68  L---KPELKAPQMLVLAPTRELAVQVAEACNDFAKHMHGVNVVALYGGQRYDVQLRALRG 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + +P T QT 
Sbjct: 125 GAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPATHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F+++P+ + + +  +T   I   +     Q  +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTV--QGMRKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   +   +++++
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|229165218|ref|ZP_04293010.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621]
 gi|228618250|gb|EEK75283.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621]
          Length = 519

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 156/364 (42%), Positives = 228/364 (62%), Gaps = 8/364 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  ++  +  V+    +++ 
Sbjct: 2   GFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKEAVQ---GIVIA 58

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA QV +   K GK+  + +  + GG     Q + L++   +++ TPGRILDH NR
Sbjct: 59  PTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINR 118

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
             L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLLFSATM D +++++E F+
Sbjct: 119 KTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFM 178

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
             P+ I+V     T   I+  ++    Q  KK  +L +LL  Q + +  IIF   K+ V 
Sbjct: 179 TEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ-SPELAIIFGRTKRRVD 235

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            L  +L  +G++   IHG++ Q  RM +L  FKEGTI+++VA+D+AARGLDI  V HV+N
Sbjct: 236 ELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGTIEVLVATDVAARGLDISGVTHVYN 295

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           FD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+  ++KVD +  D  +L+
Sbjct: 296 FDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRM--DAPTLD 353

Query: 380 PPLE 383
             LE
Sbjct: 354 EALE 357


>gi|300772029|ref|ZP_07081899.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760332|gb|EFK57158.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 450

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 157/371 (42%), Positives = 232/371 (62%), Gaps = 5/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D   + +++ A+ +AGY  PT IQ K I  VL   D+ GIAQTGTGKTA+FVLPML  
Sbjct: 5   FEDFKFNKQILNAISEAGYSVPTEIQQKAITPVLAGQDIMGIAQTGTGKTAAFVLPMLMK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  + +    R LIL PTRELA Q+ ++ + + K  +L   +L GG+  + Q + LE+G
Sbjct: 65  LKYAQGKDM--RALILSPTRELAMQIEEHIQLFSKYLDLRTVVLYGGLGPKTQIENLEKG 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR LD +  G + + +++ LV+DEAD+M+DMGFI  I  I  +VP  RQ LL
Sbjct: 123 VDIIVATPGRFLDLYLEGHINVKSLKFLVMDEADKMMDMGFISKIHRILEVVPRKRQNLL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM++ ++K++ +FL  P  IEV   ++ A+T++        Q + K  LLQ LL+  
Sbjct: 183 FSATMSELVRKIAGDFLAFPTVIEVTEQATPAKTVQQAVYKVPNQKT-KLNLLQHLLKDD 241

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFS--VCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    I+FC  K    N+ H LE++  +  V  IH N  Q +R+  ++ FKEG I+++V
Sbjct: 242 ESFHRLIVFCKTKTVADNVFHFLERKYGTEQVRVIHANKGQNTRINSINAFKEGNIRILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ +V HV NF+VP   E+Y+HRIGRTGRA   G A T     +  ++  I
Sbjct: 302 ATDVAARGLDVSNVSHVINFEVPIVIEDYVHRIGRTGRAFNEGDAITFSNPAEDYYVRKI 361

Query: 361 EKLIEKKVDWL 371
           EKLI + +  L
Sbjct: 362 EKLIRQSIPVL 372


>gi|149907510|ref|ZP_01896257.1| Helicase [Moritella sp. PE36]
 gi|149809180|gb|EDM69109.1| Helicase [Moritella sp. PE36]
          Length = 615

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 151/374 (40%), Positives = 231/374 (61%), Gaps = 8/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL L   ++  + D GY  PTPIQ + IPL+    DV G+AQTGTGKTA+F LP+L
Sbjct: 8   VQFTDLNLPEPILQVLNDLGYEAPTPIQAECIPLLQNGGDVLGMAQTGTGKTAAFALPLL 67

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           + ++    +   P+ L+L PTRELA QVA+ F+ Y ++     V  + GG  +  Q K L
Sbjct: 68  SNIDTALTK---PQILVLAPTRELAIQVAEAFQTYSRHMRGFHVLPIYGGQSYPIQLKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +R   V++ TPGR++DH NRG L ++ I+ LV+DEAD ML MGFI  +++I S  P  RQ
Sbjct: 125 KRNPQVIVGTPGRVIDHINRGTLDLSGIKALVLDEADEMLRMGFIDDVESILSKTPAERQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQL 238
             LFSATM +E++++++ F+ NP  +++   +ST E IE  C +    Q   K   L ++
Sbjct: 185 MALFSATMPEEIRRITKRFMTNPTSVKIANKTSTVENIEQKCLIIGGLQ--AKLDGLTRI 242

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+++D     IIF   K   V L   LE +G+S  A++G+++Q  R + +S  K G + +
Sbjct: 243 LETED-YDGVIIFARTKTMTVELAEKLEARGYSAAALNGDLNQAMRERTVSRLKSGQLDI 301

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLD+P +  V N+D+P   E+Y+HRIGRTGRAGR G A    A  + + + 
Sbjct: 302 VIATDVAARGLDVPRIDLVINYDIPTDTESYVHRIGRTGRAGRKGTAILFAAPRERRLLK 361

Query: 359 AIEKLIEKKVDWLN 372
           AIE+   + +  ++
Sbjct: 362 AIERATRQPLTMMD 375


>gi|226943654|ref|YP_002798727.1| DEAD box family ATP-dependent RNA helicase [Azotobacter vinelandii
           DJ]
 gi|226718581|gb|ACO77752.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Azotobacter
           vinelandii DJ]
          Length = 558

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 149/367 (40%), Positives = 235/367 (64%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+ P V+ A+   GY +P+PIQ + IP++L  HD+ G AQTGTGKTA+F LPML+ 
Sbjct: 8   FAALGIHPAVLAAITAVGYEEPSPIQAQAIPVILAGHDMIGQAQTGTGKTAAFALPMLSR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  R   R P+ LIL PTRELA QVA  FE Y      + V  + GG P   Q K L +
Sbjct: 68  IDPAR---REPQLLILAPTRELALQVATAFETYASQLPGVGVVAVYGGAPMGPQLKALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGR+ DH  R + L++ ++ LV+DEAD ML +GF+  ++ I + +P +RQT+
Sbjct: 125 GAQILVATPGRLCDHLRRDEQLLSTVKHLVLDEADEMLKLGFMEDLEVIFAALPESRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +++++E  L  P+ +++   + T   I+   +  +A   +K A + +LL+ 
Sbjct: 185 LFSATLPHSIREIAEKHLHEPQHVKIAAKTQTVARIDQAHLMVHA--DQKTAAVLRLLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++     I F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 243 EE-FDALIAFVRTKQATLDLAGALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKV 368
           ++  +KV
Sbjct: 362 RVTGQKV 368


>gi|118497423|ref|YP_898473.1| ATP-dependent RNA helicase [Francisella tularensis subsp. novicida
           U112]
 gi|195536115|ref|ZP_03079122.1| dead/deah box helicase domain protein [Francisella tularensis
           subsp. novicida FTE]
 gi|118423329|gb|ABK89719.1| ATP-dependent RNA helicase [Francisella novicida U112]
 gi|194372592|gb|EDX27303.1| dead/deah box helicase domain protein [Francisella tularensis
           subsp. novicida FTE]
          Length = 441

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 151/365 (41%), Positives = 233/365 (63%), Gaps = 4/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DL L+  +  A+   GY KPTPIQ + IP+VL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MKFSDLDLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  +  +++   V+DEADRMLDMGFI  ++ I  L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++  FL NP+ +  +  ++T + I    + T  + +K  AL+  L+
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQK-IYTLDKSNKINALI-SLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+ +   ++F   K     +   L   G S  AIHGN  Q +R K L++FK   I ++
Sbjct: 239 KDQN-LHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+PN AE+Y+HRIGRTGRAG+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357

Query: 360 IEKLI 364
           IE LI
Sbjct: 358 IEHLI 362


>gi|134301861|ref|YP_001121830.1| DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049638|gb|ABO46709.1| DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 441

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 151/365 (41%), Positives = 234/365 (64%), Gaps = 4/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+  +  A+   GY KPTPIQ + IP+VL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MKFSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  +  +++   V+DEADRMLDMGFI  ++ I +L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++  FL NP+ +  +  ++T + I    + T  + +K  AL+  L+
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQK-IYTLDKSNKINALI-SLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+ +   ++F   K     +   L   G S  AIHGN  Q +R K L++FK   I ++
Sbjct: 239 KDQN-LHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+ N AE+Y+HRIGRTGRAG+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357

Query: 360 IEKLI 364
           IE LI
Sbjct: 358 IEHLI 362


>gi|294140728|ref|YP_003556706.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293327197|dbj|BAJ01928.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 448

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 155/373 (41%), Positives = 231/373 (61%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ ++ + GY  PTPIQ + IPL L+  ++   AQTG+GKTA+FVLPML
Sbjct: 1   MSFSNLGLSDPILTSLAELGYSSPTPIQAEAIPLALKGKNLIAAAQTGSGKTATFVLPML 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +G   R +  R LIL PTRELA QV  + E YGK  NL    + GG+ +  Q + L
Sbjct: 61  EMLARGENQRKKRIRALILTPTRELAVQVCTSIEAYGKYLNLKALAVYGGVDYGPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR+ D + +  +  + IE+LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IEGIDIVVATPGRLRDLYTQRSIHFDEIEMLVLDEADRMLDMGFIEDITKIIDTLPEDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  + N  ++ V   S     I+   V       KK ALL  L+
Sbjct: 181 NLLFSATLSRQVRELAKETIPNAIQLSVTKKSEGKPNIDQWLVTV--DKDKKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +++    +IF   K     L   LEK+G     IH    Q  R +IL++FK G I+ +
Sbjct: 239 K-ENSWPQALIFIETKHGAAKLVAQLEKRGIEADCIHSGRAQAIREQILADFKTGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++ ++ARG+DI D+  V N+D+P  A+ Y+HRIGRTGRAG  G+A +LV+K+D K++  
Sbjct: 298 ISTGISARGIDIDDLPLVINYDLPYPADEYVHRIGRTGRAGAAGEAISLVSKDDFKNLCM 357

Query: 360 IEK----LIEKKV 368
           IE+    LIE+KV
Sbjct: 358 IERRLDLLIERKV 370


>gi|184154685|ref|YP_001843025.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
 gi|183226029|dbj|BAG26545.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
          Length = 492

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 151/384 (39%), Positives = 236/384 (61%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K++ A+  +GY + TPIQ +TIP+VL   DV G AQTGTGKTA+F LP +
Sbjct: 1   MYFSELGLSNKLLKAIQRSGYEEATPIQEQTIPMVLAGKDVIGQAQTGTGKTAAFGLPTI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++   TLI+ PTRELA Q  +   + GK   + V ++ GG     Q + LE
Sbjct: 61  EHVDVENPAIQ---TLIISPTRELAIQTEEELFRLGKEKRVKVQVVYGGADIRRQIRSLE 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGR+ DH  RG + ++ ++ LV+DEAD ML+MGF+  I++I    P  RQT
Sbjct: 118 KNPQILVGTPGRLRDHLRRGTVDLSGVQTLVLDEADEMLNMGFLEDIEDIIKQTPSERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++++   F+ +P+ +++     T + ++  +V   A+  +K  ++ +++ 
Sbjct: 178 LLFSATMPPEIKRIGVQFMHDPQTVKIKAKELTTDLVDQYYVR--AKDYEKFDIMTRMID 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     I+F   K+ V  L   L  +G++   IHG++ Q  R KI+  FKEG + ++V
Sbjct: 236 VQDPDLT-IVFGRTKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P+  ++Y+HRIGRTGRAG HG + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMNYLHEI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           EKL   +       +  L PP E+
Sbjct: 355 EKLTRAR-------MLPLKPPTEE 371


>gi|238755161|ref|ZP_04616507.1| DEAD/DEAH box helicase domain protein [Yersinia ruckeri ATCC 29473]
 gi|238706608|gb|EEP98979.1| DEAD/DEAH box helicase domain protein [Yersinia ruckeri ATCC 29473]
          Length = 656

 Score =  292 bits (748), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 143/364 (39%), Positives = 233/364 (64%), Gaps = 6/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  ++ A+ D GY KP+PIQ++ IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 9   FADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHN 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++     ++ P+ L+L PTRELA QVA+    + K+ + + V  L GG  ++ Q + L +
Sbjct: 69  IDPT---LKAPQVLVLAPTRELAVQVAEALSSFSKHISGVNVVALYGGQRYDVQLRALRQ 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 126 GPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F+++P+ + + + ++T   I   +      Y K  AL+ + L+S
Sbjct: 186 LFSATMPEAIRRITRRFMKDPQEVRIQSSNTTRPDISQSYWKVGGGYRKNEALV-RFLES 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G+S  A++G+++Q  R + L   ++G + +++A
Sbjct: 245 ED-FDAAIIFVRTKNATLEVAETLERSGYSSAALNGDMNQSLREQTLERLRDGRLDILIA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  IE
Sbjct: 304 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNIE 363

Query: 362 KLIE 365
           + ++
Sbjct: 364 RTMK 367


>gi|281490897|ref|YP_003352877.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis
           subsp. lactis KF147]
 gi|281374655|gb|ADA64175.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus
           lactis subsp. lactis KF147]
          Length = 547

 Score =  292 bits (748), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 151/381 (39%), Positives = 236/381 (61%), Gaps = 13/381 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  +V  + + GY +PTPIQ +TI L L+  DV G AQTGTGKTA+F LP +
Sbjct: 1   MKFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    L++ PTRELA Q  +   ++GK+  L V  + GG   E Q K L+
Sbjct: 61  EKIDASNPAIQ---ALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIKGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR++D   R  + ++ +E L++DEAD ML+MGF+  I  I    P  RQT
Sbjct: 118 AGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPEARQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM ++++K+   F++NP+ I++     TA+ I+  FV T  +  +K  +L +LL 
Sbjct: 178 LLFSATMPNDIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKT--KEFEKFDVLTRLLD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +G+    +HG++DQ  R+ +L +FK G I ++V
Sbjct: 236 VERP-ELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++ AI
Sbjct: 295 ATDVAARGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPP 381
           E + +K        +  L PP
Sbjct: 355 ENMTKKP-------MKGLKPP 368


>gi|254883642|ref|ZP_05256352.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 4_3_47FAA]
 gi|294775629|ref|ZP_06741138.1| ATP-dependent RNA helicase RhlE [Bacteroides vulgatus PC510]
 gi|254836435|gb|EET16744.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 4_3_47FAA]
 gi|294450571|gb|EFG19062.1| ATP-dependent RNA helicase RhlE [Bacteroides vulgatus PC510]
          Length = 434

 Score =  292 bits (748), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 166/428 (38%), Positives = 254/428 (59%), Gaps = 17/428 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY  PTPIQ + IP++L+  D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   + +  + LIL PTRELA Q+ +NF++Y     +  A++ GG+P +AQ   L+
Sbjct: 61  QRLYQSDHK-KGIKALILTPTRELAIQIGENFDQYAGYTGVKHAVIFGGVPQKAQVDALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  VLI TPGR+LD  ++G + +  +E  V+DEADRMLDMGFI  I+ +  L+P  RQT
Sbjct: 120 RGVQVLIATPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++++ L NP++IEV   SST +TI     + Y    K+   L   L 
Sbjct: 180 LFFSATMPSEIEKLADSMLTNPEKIEVTPVSSTVDTIRQ---SVYFVEKKEKKDLLLHLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +++ +IF   K     L   L K      AIHGN  Q +R + L+NFK+ T ++++
Sbjct: 237 KNPEIESVLIFTRTKHGADKLARILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+++PN +E Y+HRIGRTGRAG  G A +    E++ ++  I
Sbjct: 297 ATDIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDI 356

Query: 361 EKLIEKKV------DWLN--GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG-FDRRKK 411
           +KLI  ++       W+   G+ +      E  + A+ N   + +    KS G + RRKK
Sbjct: 357 QKLIGLQIPVVKDHPWVTVEGEKAQAGKTEELKEKAKANKVYRGS----KSNGDYWRRKK 412

Query: 412 NYSSQKSH 419
              S++  
Sbjct: 413 QAQSRQGQ 420


>gi|227888879|ref|ZP_04006684.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii
           ATCC 33200]
 gi|227850572|gb|EEJ60658.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii
           ATCC 33200]
          Length = 484

 Score =  292 bits (748), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 152/388 (39%), Positives = 240/388 (61%), Gaps = 15/388 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+++ L P+++ A+  +G+ + TPIQ KTIPLVL+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+K    ++    +I+EPTRELA Q  +   + G++    V ++ GG     Q + L+
Sbjct: 61  QNLDKQHDSIQ---AIIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGR+LDH  RG + ++ ++ +V+DEAD MLDMGFI  I++I        QT
Sbjct: 118 QTPAILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILKYASSKHQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + ++ E F+ +P+ +++     TA  I+  FV   A+ ++K  +L +L+ 
Sbjct: 178 LLFSATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFV--RAKENEKFDILCRLID 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+     +IF   K+ V  L   L+ +G++   IHG++ Q  RM +L  F++G + ++V
Sbjct: 236 VQNP-DLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  I
Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTI 354

Query: 361 EKLIEKKV---------DWLNGDLSSLN 379
           E+L  KK+         +   G LS+ N
Sbjct: 355 EQLTHKKMMPLKPPTDEEAFKGQLSAAN 382


>gi|254284072|ref|ZP_04959040.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
 gi|219680275|gb|EED36624.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
          Length = 598

 Score =  292 bits (748), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 153/372 (41%), Positives = 230/372 (61%), Gaps = 9/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L   ++ A+ D GY  P+ IQ  TIP +L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 10  FDELRLPDFLLKALADVGYESPSAIQSMTIPPLLDGHDLVGQAQTGTGKTAAFALPVLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+    +   P+ L+L PTRELA QVA+ F+KY + +    V  + GG  +  Q ++L+R
Sbjct: 70  LD---TKAGGPQALVLTPTRELAIQVAEAFQKYARYSKGFKVVPIYGGSDYRTQLRQLQR 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH  RG L +++++ LV+DEAD ML MGFI  ++ I    P TRQ  
Sbjct: 127 GVHIIVGTPGRVMDHMRRGSLDLSSLKTLVLDEADEMLRMGFIDDVEWILEQTPATRQIA 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQ 240
           LFSATM D ++++++  LQ+P+ I +   + T  +I +  ++    Q   K   L ++L+
Sbjct: 187 LFSATMPDAIRRIAKTHLQSPQEITIKRKTVTNASIRQRVWIMAGVQ---KLDALTRILE 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++D     IIF   +     L   L  +GF+  A++G+I Q  R K + +FK G + L+V
Sbjct: 244 TED-YDGVIIFVRTRIATQELADKLAARGFATAALNGDIAQNQREKTVDSFKRGQLDLLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV N+D+PN  E YIHRIGRTGRAGR G+A    AK + + + AI
Sbjct: 303 ATDVAARGLDVDRVSHVINYDIPNDPEAYIHRIGRTGRAGRTGEAILFAAKRERRLLHAI 362

Query: 361 EKLIEKKVDWLN 372
           E+   +K+D + 
Sbjct: 363 ERTTGQKIDQMT 374


>gi|118470234|ref|YP_889292.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium smegmatis str. MC2 155]
 gi|118171521|gb|ABK72417.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium smegmatis str. MC2 155]
          Length = 581

 Score =  292 bits (748), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 151/369 (40%), Positives = 226/369 (61%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL + P V+ AV D GY  P+ IQ  TIP +L   DV G+AQTGTGKTA+F +P+L+ 
Sbjct: 23  FADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFAIPILSK 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  R   R  + L+L PTRELA QVA+ F +YG +   + V  + GG  +  Q   L R
Sbjct: 83  IDTSR---RDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSGLRR 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  RG L ++ ++ LV+DEAD ML MGF   ++ I +  P  +Q  
Sbjct: 140 GAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYKQVA 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K++  +L +P  + V   ++TAE I   F+       +K   L ++L+ 
Sbjct: 200 LFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAG--PRKMDALTRILEV 257

Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   I+F   K+    +   L+ +GF+  AI+G+I+Q  R + +S  K+GTI ++
Sbjct: 258 EEGDAM---IVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDIL 314

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V   +   + +
Sbjct: 315 IATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKS 374

Query: 360 IEKLIEKKV 368
           IEK    K+
Sbjct: 375 IEKATRSKL 383


>gi|167761792|ref|ZP_02433919.1| hypothetical protein BACSTE_00133 [Bacteroides stercoris ATCC
           43183]
 gi|167700298|gb|EDS16877.1| hypothetical protein BACSTE_00133 [Bacteroides stercoris ATCC
           43183]
          Length = 372

 Score =  292 bits (748), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 151/368 (41%), Positives = 227/368 (61%), Gaps = 3/368 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL ++  ++ A+ + GY  PTPIQ+K IP  L   D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFKDLNITEPILKAIEEKGYANPTPIQVKAIPAALTGKDILGCAQTGTGKTAAFAIPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  + R +  + LIL PTRELA Q+++  + Y K   +   ++ GG+   AQ   L 
Sbjct: 61  QHLQVLKNRDKSIKALILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRAQVNMLH 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+LD  N+G + ++N+   V+DEADRMLDMGFI  I+ +   +P  +QT
Sbjct: 121 KGVDILVATPGRLLDLMNQGYIHLDNVRHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM D +  ++ + L+ P +I +   SST +TIE      + +  +K  LL  +L 
Sbjct: 181 LFFSATMPDTIIALTNSLLKQPVKITITPKSSTVDTIEQTIY--FVEKKEKSKLLISILH 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  ++ ++F   K N   +   L K G    AIHGN  Q +R   L NFK G I++M+
Sbjct: 239 KTEG-QSVLVFSRTKHNADRIVRVLSKAGIGSQAIHGNKSQNARQSALENFKTGKIRVMI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A T  ++E+ K ++ I
Sbjct: 298 ATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNLGTALTFCSQEERKLVNDI 357

Query: 361 EKLIEKKV 368
           +KL  KK+
Sbjct: 358 QKLTGKKL 365


>gi|323701905|ref|ZP_08113575.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533209|gb|EGB23078.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum nigrificans
           DSM 574]
          Length = 532

 Score =  292 bits (748), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 148/366 (40%), Positives = 226/366 (61%), Gaps = 6/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L   +V  ++D G+ +PTPIQ   +PLVL  HD+ G AQTGTGKTA+F +P++  
Sbjct: 10  FGNLELDSCIVQGLVDMGFEEPTPIQQLAVPLVLAGHDIIGQAQTGTGKTAAFGIPLVAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     R R  + +I+ PTRELA QV +   K G+     V  + GG   E Q + L +G
Sbjct: 70  LN---FRKRGVQAIIITPTRELAIQVGEEINKIGRYRRARVLPIYGGQSIERQIRSLRQG 126

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+LDH  R  L ++ + ++V+DEAD MLDMGFI  I+ I    P  RQTLL
Sbjct: 127 VHVVVGTPGRLLDHLRRQTLKLDQVSMVVLDEADEMLDMGFIDDIEEILRHTPPERQTLL 186

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E+ +++  ++ +PK + V+  + TA +IE  +    A    K   L ++L + 
Sbjct: 187 FSATMPEEISRLARQYMTDPKFVTVSKANITAPSIEQIYYE--APEKHKLEALCRILDTT 244

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           + +  GI+FC  K+ V  L   L+ +G++  ++HG++ Q+ R  ++  F+ G ++L+VA+
Sbjct: 245 E-ITQGIVFCRTKRGVDELVAGLQARGYTAVSLHGDLSQQQRNTVMRQFRSGEVELLVAT 303

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV N+D+P   E Y+HRIGRTGRAGR G A T++   + + +  IE 
Sbjct: 304 DVAARGLDIEGVSHVINYDIPQDPEFYVHRIGRTGRAGRSGVAITIITPREYRQLRLIEN 363

Query: 363 LIEKKV 368
           L + ++
Sbjct: 364 LTKTRI 369


>gi|322385798|ref|ZP_08059442.1| ATP-dependent RNA helicase DeaD [Streptococcus cristatus ATCC
           51100]
 gi|321270536|gb|EFX53452.1| ATP-dependent RNA helicase DeaD [Streptococcus cristatus ATCC
           51100]
          Length = 524

 Score =  292 bits (748), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 148/371 (39%), Positives = 235/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N+IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    + ++K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLLII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|227536058|ref|ZP_03966107.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227243955|gb|EEI93970.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 450

 Score =  292 bits (748), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 157/371 (42%), Positives = 232/371 (62%), Gaps = 5/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D   + +++ A+ +AGY  PT IQ K I  VL   D+ GIAQTGTGKTA+FVLPML  
Sbjct: 5   FEDFKFNKQILNAISEAGYSVPTEIQQKAITPVLAGQDIMGIAQTGTGKTAAFVLPMLMK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  + +    R LIL PTRELA Q+ ++ + + K  +L   +L GG+  + Q + LE+G
Sbjct: 65  LKYAQGKDM--RALILSPTRELAMQIEEHIQLFSKYLDLRTVVLYGGLGPKTQIENLEKG 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR LD +  G + + +++ LV+DEAD+M+DMGFI  I  I  +VP  RQ LL
Sbjct: 123 VDIIVATPGRFLDLYLEGHINVKSLKFLVMDEADKMMDMGFISKIHRILEVVPRKRQNLL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM++ ++K++ +FL  P  IEV   ++ A+T++        Q + K  LLQ LL+  
Sbjct: 183 FSATMSELVRKIAGDFLAFPTVIEVTEQATPAKTVQQAVYKVPNQKT-KLNLLQHLLKDD 241

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFS--VCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    I+FC  K    N+ H LE++  +  V  IH N  Q +R+  ++ FKEG I+++V
Sbjct: 242 ESFHRLIVFCKTKTVADNVFHFLERKYGTEQVRVIHANKGQNTRINSINAFKEGNIRILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ +V HV NF+VP   E+Y+HRIGRTGRA   G A T     +  ++  I
Sbjct: 302 ATDVAARGLDVSNVSHVINFEVPIVIEDYVHRIGRTGRAFNEGDAITFSNPAEEYYVRKI 361

Query: 361 EKLIEKKVDWL 371
           EKLI + +  L
Sbjct: 362 EKLIRQSIPVL 372


>gi|283457475|ref|YP_003362053.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133468|dbj|BAI64233.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 732

 Score =  292 bits (748), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 151/375 (40%), Positives = 234/375 (62%), Gaps = 9/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL  +V+ A+ + GY KP+PIQ +TIPL+L+ HDV G+AQTGTGKTA+F LP L+ 
Sbjct: 63  FTDLGLDARVLAALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPALSR 122

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
              L       R  + L+L PTRELA QVA+ F  Y  +  + TV  + GG P+  Q   
Sbjct: 123 MAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAG 182

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RGA V++ TPGR++DH  +G L ++N++ LV+DEAD ML MGF   ++ I    P ++
Sbjct: 183 LRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDSK 242

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q  LFSATM + ++K+++ +L +P+ + V   ++T+  I   ++     +S K   + ++
Sbjct: 243 QVALFSATMPNSIRKIAQQYLNDPREVRVKAKTTTSSNISQRYMQVM--HSHKLDAMTRV 300

Query: 239 LQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ ++   +GII F   KK    +   L+ +GF+  AI+G+I Q+ R + +   ++G I 
Sbjct: 301 LEVENY--DGIIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRID 358

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  +  V N+D+P+  E+Y+HRIGRTGRAGR G A   V   +   +
Sbjct: 359 ILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYML 418

Query: 358 DAIEKLIEKKVDWLN 372
             IEK   +KV+ ++
Sbjct: 419 RQIEKATRQKVEPMH 433


>gi|268592819|ref|ZP_06127040.1| ATP-dependent RNA helicase DeaD [Providencia rettgeri DSM 1131]
 gi|291311604|gb|EFE52057.1| ATP-dependent RNA helicase DeaD [Providencia rettgeri DSM 1131]
          Length = 643

 Score =  292 bits (748), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 148/381 (38%), Positives = 240/381 (62%), Gaps = 10/381 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+LGLS  ++ A+ D GY KP+PIQ + IPL++  +DV G+AQTG+GKTA+F LP+L
Sbjct: 7   ISFAELGLSASILTALNDLGYEKPSPIQQQCIPLLMDGNDVLGMAQTGSGKTAAFSLPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++     ++ P+ L+L PTRELA QVA+    + K+ N + V  L GG  ++ Q + L
Sbjct: 67  HNIDPD---LKAPQILVLAPTRELAVQVAEAMSDFSKHMNRVNVVALYGGQRYDVQLRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  +++ TPGR+LDH  RG L ++ ++ LV+DEAD ML MGFI  ++NI S +P   Q
Sbjct: 124 RQGPQIVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+++PK I +    +T   I   +   Y    +K   L + L
Sbjct: 184 TALFSATMPEPIRRITRRFMKDPKEIRIQASITTRPDIAQSYWTVYGM--RKNEALVRFL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +++D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + ++
Sbjct: 242 EAED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKH 356
           +A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   +   +++
Sbjct: 301 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 360

Query: 357 IDAIEKLIEKKVDWLNGDLSS 377
           ++   KL   +V+  + DL S
Sbjct: 361 VERTMKLTIPEVELPDADLLS 381


>gi|324993358|gb|EGC25278.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK405]
 gi|327458716|gb|EGF05064.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1057]
          Length = 523

 Score =  292 bits (748), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 148/371 (39%), Positives = 232/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P  +++     T E ++  ++    + ++K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPNHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+  GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKISGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|167754851|ref|ZP_02426978.1| hypothetical protein CLORAM_00355 [Clostridium ramosum DSM 1402]
 gi|167704901|gb|EDS19480.1| hypothetical protein CLORAM_00355 [Clostridium ramosum DSM 1402]
          Length = 436

 Score =  292 bits (747), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 155/371 (41%), Positives = 232/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L   ++ AV +  Y  P+PIQ + IP ++   D+ G A+TGTGKTA+F LP+L
Sbjct: 1   MKFSELELIEPLLNAVKEMKYDIPSPIQEQAIPAIISGRDIFGCAKTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L       + PRT   LIL PTRELA Q+ + FE      NL  A++ GG+   +Q  
Sbjct: 61  QKLYLRDESEKYPRTIKALILAPTRELAIQINETFEAMNPQVNLKSAVIFGGVRQGSQVT 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           K+ RG DVLI TPGR++D +N+G + + ++E LV+DEADRMLDMGFI  I+ I   +P  
Sbjct: 121 KINRGIDVLIATPGRLIDLYNQGLVDLKHVEYLVLDEADRMLDMGFIKDIRKILRFIPRR 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            QT+LFSAT+ DE++ +  + L +P +I +++ + T E I       +     K  LL +
Sbjct: 181 HQTMLFSATLPDEIKHLVSDLLNDPLKIMISSGNVTVEKINQSLY--FVDKVNKAKLLIK 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL++   + N I+F   K+NV  LC  L K   +   IHG+  Q +R++ L+NFK   ++
Sbjct: 239 LLENPQ-IYNAIVFVRTKRNVDTLCKKLIKAQITCEGIHGDKSQNARVRALNNFKNDKVR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VASD+AARG+DI ++ HV NFD+P++AENY+HRIGRT RAG  G+A T  + ++   +
Sbjct: 298 VLVASDIAARGIDIDELTHVINFDLPDQAENYVHRIGRTARAGASGEAITFCSFQEKALL 357

Query: 358 DAIEKLIEKKV 368
             I+K I + +
Sbjct: 358 KDIQKFINQDI 368


>gi|319937469|ref|ZP_08011874.1| helicase [Coprobacillus sp. 29_1]
 gi|319807309|gb|EFW03918.1| helicase [Coprobacillus sp. 29_1]
          Length = 520

 Score =  292 bits (747), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 151/371 (40%), Positives = 236/371 (63%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS  V+  +   GYV P+PIQ K+IP++L+  D+ G AQTGTGKT +F   +L+ 
Sbjct: 6   FKDLGLSSDVLKGIEMMGYVSPSPIQEKSIPVLLEGQDIIGQAQTGTGKTLAFGSVLLSK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++K    V+    LIL PTRELA Q+ +  ++ GK  NL++  + GG   E Q K L+RG
Sbjct: 66  IQKEGKHVK---ALILSPTRELALQIHEELKRIGKCTNLSIVSVFGGSDIERQIKDLKRG 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           AD+++ TPGR+ D   R  L +NNI+ +V+DEAD ML+MGF+  I+ I    P  +QT+L
Sbjct: 123 ADIVVGTPGRVQDLMRRRVLKINNIDFMVLDEADEMLNMGFVEDIETILKATPDNKQTVL 182

Query: 183 FSATMTDELQKVSENFLQNPK-RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSATM   ++K++ N++Q+    I++ + + TA T+   +  T    + K   L ++L S
Sbjct: 183 FSATMPATIKKIASNYMQDDYMHIQIKSKTKTASTVSQYYFETRP--TNKFETLCRILDS 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  M+N IIFC  K++V  +  S++++ + V A+HG++ Q  R   L  FK G IQ +VA
Sbjct: 241 RQ-MENTIIFCKTKRSVDEVVASMQQKHYDVEAMHGDLSQNQRTNTLKRFKSGHIQYLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ ++ HV N+++P   E YIHRIGRTGRA + G+A++LV   +   + +I+
Sbjct: 300 TDVAARGIDVDNISHVINYEMPQDEELYIHRIGRTGRANKKGEAYSLVTNREKNFLMSIQ 359

Query: 362 KLIEKKVDWLN 372
           K     ++ L+
Sbjct: 360 KRTNSHIEKLD 370


>gi|322831220|ref|YP_004211247.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
 gi|321166421|gb|ADW72120.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
          Length = 640

 Score =  292 bits (747), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 143/364 (39%), Positives = 232/364 (63%), Gaps = 7/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 9   FADLGLSAPIISALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLHN 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           ++   A ++ P+ L+L PTRELA QVA+    + K+ + + V  L GG  ++ Q + L +
Sbjct: 69  ID---ASLKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRALRQ 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 126 GPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F+++P+ + + +  +T   I   + + Y    +K   L + L++
Sbjct: 186 LFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWSVYGL--RKNEALVRFLEA 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G+S  A++G+++Q  R + L   K+G + +++A
Sbjct: 244 ED-FDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  IE
Sbjct: 303 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 362

Query: 362 KLIE 365
           + ++
Sbjct: 363 RTMK 366


>gi|294056345|ref|YP_003550003.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615678|gb|ADE55833.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 465

 Score =  292 bits (747), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 156/374 (41%), Positives = 227/374 (60%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L L+  +  A+ D GY  P+PIQ + IP++L+  D+   AQTGTGKTA+F LP+L
Sbjct: 4   LTFQELPLAEPIQRALSDKGYTTPSPIQARAIPVLLEGGDLLACAQTGTGKTAAFALPLL 63

Query: 61  -TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             I E+ R   R   R L+L PTRELA QVA+NFE YGK+      ++ GG+  + Q K 
Sbjct: 64  HGIAERPRKPFRRGVRHLVLTPTRELAVQVAENFELYGKHIKFRSMMVYGGVSEKPQIKT 123

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+  PGR++D  ++G + ++ +E  ++DEADRMLDMGFI  I+ I + +P  R
Sbjct: 124 LFQGVDVLVACPGRLIDLMDQGHVDLSQVETFILDEADRMLDMGFIRDIRKIAAKLPKKR 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQ 236
           QTLLFSATM  E+ K+    L  P  I +    +TA+ ++   CF+   A   K   LL+
Sbjct: 184 QTLLFSATMAPEITKLGHAMLHQPAEIRIAPQGTTADKVDQSLCFIGKKA---KPKLLLE 240

Query: 237 QLLQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            L +  D   N   ++F   K    NL   L  +G    AIHGN  Q +R K L  ++ G
Sbjct: 241 MLHRRFDEQPNELSLVFTRTKHGAKNLAKKLNGEGLKADAIHGNKSQSAREKTLERYRRG 300

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I ++VA+D+AARG+D+ ++  V NFD+P  A+ Y+HRIGRT RAG  G A +  ++E++
Sbjct: 301 EIDILVATDVAARGIDVKNITLVINFDLPMEADAYVHRIGRTARAGASGHAVSFCSEEEV 360

Query: 355 KHIDAIEKLIEKKV 368
             +  IE+LI+K V
Sbjct: 361 ALLRQIERLIKKTV 374


>gi|317970363|ref|ZP_07971753.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0205]
          Length = 598

 Score =  292 bits (747), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 148/368 (40%), Positives = 228/368 (61%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G SP+++ A+ + GY +P+PIQ   IP ++   D+ G AQTGTGKTA+F LPML  
Sbjct: 33  FAAFGFSPEILEALEEIGYSEPSPIQAAAIPELMLGRDLVGQAQTGTGKTAAFALPMLAA 92

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121
           L++ +   R P+ L+L PTRELA QVAD+F+ Y  K  +L V  + GG  F  Q  KL+R
Sbjct: 93  LDETQ---RTPQVLVLTPTRELAIQVADSFKSYATKLPHLRVLPVYGGSDFRDQIHKLKR 149

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  +G L ++ +  LV+DEAD ML MGFI  ++ + S +P  RQ +
Sbjct: 150 GVQVVVGTPGRVMDHMRQGTLDVSGLRSLVLDEADEMLRMGFIDDVEWVLSQLPEKRQVV 209

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++S  +L +P  I + T  S +  I+  F+        K   L ++L++
Sbjct: 210 LFSATMPSEIRRISHQYLNSPAEITIKTKGSDSSRIQQRFITVNGPM--KLEALSRVLEA 267

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T +  IIF   K   V +  +LE +G+ V  ++G++ Q  R + +   K GT+ ++VA
Sbjct: 268 E-TKEGVIIFARTKAITVTVAEALEAKGYGVAVLNGDVAQSQRERTIERLKNGTVDVLVA 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D+P  +E Y+HRIGRTGRAGR G A   V   + + I  +E
Sbjct: 327 TDVAARGLDVDRISLVINYDIPFDSEAYVHRIGRTGRAGRTGNAILFVTPRERRFITGLE 386

Query: 362 KLIEKKVD 369
           + + + ++
Sbjct: 387 RAVGRPIE 394


>gi|118594179|ref|ZP_01551526.1| putative ATP-dependent RNA helicase protein [Methylophilales
           bacterium HTCC2181]
 gi|118439957|gb|EAV46584.1| putative ATP-dependent RNA helicase protein [Methylophilales
           bacterium HTCC2181]
          Length = 427

 Score =  292 bits (747), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 147/369 (39%), Positives = 221/369 (59%), Gaps = 2/369 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    L   ++ A+ +AGY +PTPIQ K+IP ++    V   AQTGTGKTA+FVLP+L
Sbjct: 1   MSFQTFNLDASILKAIQEAGYDQPTPIQTKSIPEIMLNKHVLASAQTGTGKTAAFVLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K R+  R PR LI+ PTRELA Q+ D+ +KY +   +    + GGI +  QN+   
Sbjct: 61  DKLTKNRSEGRGPRVLIVSPTRELATQITDSIKKYSRYLRINSITITGGISYGLQNRMFS 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+L+ TPGR+LD + + K+    +E++++DEADRMLDMGF+P I+ I +     +Q 
Sbjct: 121 KPIDILVATPGRLLDLYQQKKINFKGLEVMILDEADRMLDMGFVPDIRKIYNATSKKQQM 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT    +QK+++ FL NP  I +    S  + I+        Q S K  +L   ++
Sbjct: 181 LMFSATFDPPIQKIAQEFLTNPVTISIKPDVSGHKNIKQLIYFADNQ-SHKQQMLDHFIK 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D +   IIF   K+    L   L        A+HG++ Q SR K ++ FK    +++V
Sbjct: 240 N-DEVTQAIIFTATKRMADQLSDQLYHSDIKTSALHGDMSQGSRTKTINRFKRNETKILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RG+D+ ++ HVFN+D+P  AE+YIHRIGRTGRA   G A +LV+  D + +  I
Sbjct: 299 ATDLASRGIDVKNISHVFNYDMPRFAEDYIHRIGRTGRANNKGIAISLVSPTDREFLRKI 358

Query: 361 EKLIEKKVD 369
           E+    K++
Sbjct: 359 ERFTNLKIE 367


>gi|15672332|ref|NP_266506.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723219|gb|AAK04448.1|AE006272_2 ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326405930|gb|ADZ63001.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis
           subsp. lactis CV56]
          Length = 547

 Score =  292 bits (747), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 151/381 (39%), Positives = 236/381 (61%), Gaps = 13/381 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  +V  + + GY +PTPIQ +TI L L+  DV G AQTGTGKTA+F LP +
Sbjct: 1   MKFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    L++ PTRELA Q  +   ++GK+  L V  + GG   E Q K L+
Sbjct: 61  EKIDASNPAIQ---ALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIKGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR++D   R  + ++ +E L++DEAD ML+MGF+  I  I    P  RQT
Sbjct: 118 AGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPEARQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM ++++K+   F++NP+ I++     TA+ I+  FV T  +  +K  +L +LL 
Sbjct: 178 LLFSATMPNDIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKT--KEFEKFDVLTRLLD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +G+    +HG++DQ  R+ +L +FK G I ++V
Sbjct: 236 VERP-ELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++ AI
Sbjct: 295 ATDVAARGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPP 381
           E + +K        +  L PP
Sbjct: 355 ENMTKKP-------MKGLKPP 368


>gi|300362413|ref|ZP_07058589.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri JV-V03]
 gi|300353404|gb|EFJ69276.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri JV-V03]
          Length = 485

 Score =  292 bits (747), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 151/388 (38%), Positives = 241/388 (62%), Gaps = 15/388 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+++ L P+++ A+  +G+ + TPIQ KTIPLVL+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+K    ++    +++EPTRELA Q  +   + G++    V ++ GG     Q + L+
Sbjct: 61  QNLDKQHDSIQ---AIVIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGR+LDH  RG + ++ ++ +V+DEAD MLDMGFI  I++I +      QT
Sbjct: 118 QTPAILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILNYASSKHQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + ++ E F+ +P+ +++     TA  I+  FV   A+ ++K  +L +L+ 
Sbjct: 178 LLFSATMPKPILRIGEKFMHDPEIVKIKGKELTANLIDQYFV--RAKENEKFDILCRLID 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+     +IF   K+ V  L   L+ +G++   IHG++ Q  RM +L  F++G + ++V
Sbjct: 236 VQNP-DLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  I
Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTI 354

Query: 361 EKLIEKKV---------DWLNGDLSSLN 379
           E+L  KK+         +   G LS+ N
Sbjct: 355 EQLTHKKMMPLKPPTDEEAFKGQLSAAN 382


>gi|116495993|ref|YP_807727.1| superfamily II DNA/RNA helicase [Lactobacillus casei ATCC 334]
 gi|191639473|ref|YP_001988639.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
 gi|227533029|ref|ZP_03963078.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239630391|ref|ZP_04673422.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|116106143|gb|ABJ71285.1| Superfamily II DNA and RNA helicase [Lactobacillus casei ATCC 334]
 gi|190713775|emb|CAQ67781.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
 gi|227189430|gb|EEI69497.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239526674|gb|EEQ65675.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|327383567|gb|AEA55043.1| DEAD box helicase family protein [Lactobacillus casei LC2W]
 gi|327386759|gb|AEA58233.1| DEAD box helicase family protein [Lactobacillus casei BD-II]
          Length = 502

 Score =  292 bits (747), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 149/368 (40%), Positives = 226/368 (61%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ A+  +G+ + TPIQ +TIPLVL   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFKELGLDHDLLKAIAQSGFEEATPIQAETIPLVLAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++K     R  + L++ PTRELA Q  +   + G++  + V  + GG     Q ++L 
Sbjct: 61  QNIDKAD---RSIQALVISPTRELAIQTQEELYRLGQDKKIKVQAVYGGADIRRQIRQLS 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILDH  R  L + N+++LV+DEAD MLDMGFI  I+ I   +P  RQT
Sbjct: 118 EHPQIVVGTPGRILDHIGRHTLKLQNLKVLVLDEADEMLDMGFIDDIEKIVEQMPTARQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+   + +++  F+  P  +++     TA+T+E  +V   A+  +K  ++ +L  
Sbjct: 178 LLFSATIPASIMRLTNKFMHEPVTVKIKAKELTADTVEQYYVR--AKDYEKFDVMTRLFD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     +IF   K+ V  L   L+ +G+    IHG++ Q+ RM +L  FK G +  +V
Sbjct: 236 VQDP-DLALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG  G + T V   +I+++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIEYLHTI 354

Query: 361 EKLIEKKV 368
           E L +K++
Sbjct: 355 EDLTKKRM 362


>gi|313500956|gb|ADR62322.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida BIRD-1]
          Length = 592

 Score =  292 bits (747), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 154/352 (43%), Positives = 225/352 (63%), Gaps = 12/352 (3%)

Query: 35  VLQRHDVCGIAQTGTGKTASFVLPMLTIL-------EKGRARVRMPRTLILEPTRELAAQ 87
           +LQ  D+   AQTGTGKT  F LP+L  L       +  R   R PR L+L PTRELAAQ
Sbjct: 1   MLQGRDLMVAAQTGTGKTGGFALPILERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQ 60

Query: 88  VADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNI 147
           V D+F+ Y ++  L  A + GG+    Q + + +G DVL+  PGR+LD   +GK+ + ++
Sbjct: 61  VHDSFKVYARDLPLVSACIFGGVGMNPQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHV 120

Query: 148 EILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV 207
           EILV+DEADRMLDMGFI  ++ + + +P  RQ LLFSAT + ++  +++  LQNP+RIEV
Sbjct: 121 EILVLDEADRMLDMGFIHDVKKVLARLPAKRQNLLFSATFSKDITDLADKLLQNPERIEV 180

Query: 208 NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
             P++T E IE       A  S K ALL  L+ +    +  ++F   K     L   LEK
Sbjct: 181 TPPNTTVERIEQRVYRLPA--SHKRALLAHLI-TLGAWEQVLVFTRTKHGANRLAEYLEK 237

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
           QG +  AIHGN  Q +R K L++FK  +++++VA+D+AARGLDI  + HV NF++PN  E
Sbjct: 238 QGLTAAAIHGNKSQNARTKALADFKANSVRVLVATDIAARGLDIDQLPHVVNFELPNVEE 297

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           +Y+HRIGRTGRAGR G+A +LVA ++ K + +IE++ ++++   +GDL   +
Sbjct: 298 DYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERVTKQRI--ADGDLMGFD 347


>gi|304403848|ref|ZP_07385510.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304346826|gb|EFM12658.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 546

 Score =  292 bits (747), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 146/366 (39%), Positives = 230/366 (62%), Gaps = 6/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+ GL PKV+ A+ + G+ + TPIQ K+IP+ L   D+ G AQTGTGKTA+F +P++  
Sbjct: 4   FAEFGLEPKVLQAITELGFEEATPIQSKSIPIALTGSDLIGQAQTGTGKTAAFGIPLINK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +     R+     LI+ PTRELA QVA+   K  +   L    + GG     Q + L++ 
Sbjct: 64  IPVTEDRIV---ALIMTPTRELAIQVAEEIGKLTRYKGLRSLPIYGGQEIGRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++I TPGR+LDH NR  + + +++ +++DEAD MLDMGF+  I +I S+VP  RQT+L
Sbjct: 121 PQIIIGTPGRLLDHINRKTIKLADVQTVILDEADEMLDMGFMEDITSILSMVPAERQTML 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +Q++++ FL NP+ + V     +A  I+  ++  + +  +K   L +L+   
Sbjct: 181 FSATMPPNIQRLAQTFLNNPEHVSVIPKQVSAPLIDQAYIEVHER--QKFEALSRLI-DM 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           ++ +  IIF   K+ V  L  +L+K+G+S   +HG++ Q  R  ++  F++G+I ++VA+
Sbjct: 238 ESPELAIIFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  V HV NFD+P   E+Y+HRIGRTGRAG+ G A++ V   +  H+  IEK
Sbjct: 298 DVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPRETDHLHFIEK 357

Query: 363 LIEKKV 368
           +   K+
Sbjct: 358 VTRHKI 363


>gi|323342311|ref|ZP_08082543.1| DEAD/DEAH family ATP-dependent RNA helicase [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463423|gb|EFY08617.1| DEAD/DEAH family ATP-dependent RNA helicase [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 594

 Score =  292 bits (747), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 156/366 (42%), Positives = 227/366 (62%), Gaps = 10/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L  ++V AV + GY +PT IQ + IP++L  HD+   +QTGTGKTA+F LPML
Sbjct: 17  MTFKELELEEEIVRAVTEKGYEEPTDIQSQAIPILLGNHDLLAQSQTGTGKTAAFGLPML 76

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117
           ++ + G  +     +LIL PTREL  QVA+   +F KY +  N  +A + GG P + Q +
Sbjct: 77  SLTQPGDKK--RTNSLILCPTRELCMQVAEEMRSFSKYKQGVN--IACVYGGSPIDKQIR 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+RGAD+++ TPGR++DH  R  + +++   +V+DEAD ML+MGFI  I+ I S +P  
Sbjct: 133 DLKRGADIVVATPGRLMDHIRRKTIRLDDCRHIVLDEADEMLNMGFIEDIEEIFSFLPEE 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ   FSATM  E+ K+SE FL  P+RI ++  + T   I+  +    ++   K  L  Q
Sbjct: 193 RQFAFFSATMPKEIVKLSEKFLVEPERITLSRNNLTVSRIKQIYYTVESR--DKVDLTIQ 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ   T    +IFCN KK V  L   L K GF    +HG++ Q  R  ++S FK+G + 
Sbjct: 251 LLQLHKT-SGTMIFCNTKKMVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRFKKGMVS 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARG+D+  +  V N+D+P   E Y+HRIGRTGRAG+ G A TLV++     I
Sbjct: 310 VLIATDVAARGIDVDSMDVVINYDIPQELEYYVHRIGRTGRAGKEGLAITLVSRRQRYAI 369

Query: 358 DAIEKL 363
             IE+L
Sbjct: 370 KQIERL 375


>gi|227825056|ref|ZP_03989888.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
 gi|226905555|gb|EEH91473.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
          Length = 532

 Score =  292 bits (747), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 153/382 (40%), Positives = 233/382 (60%), Gaps = 10/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L  K++ A+ D G+ +P+PIQ   IPL L+  D+ G AQTGTGKTA+F +P++  
Sbjct: 9   FEDLNLDKKILSALKDMGFEEPSPIQKGAIPLALEGDDIIGQAQTGTGKTAAFGIPIIQS 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++   + R  + L++ PTREL  QVA+   K G+   + V  + GG P E Q + L+ G
Sbjct: 69  IDE---KNRHVQALVMSPTRELCIQVAEEISKIGRLKRVHVLPVYGGQPIERQIRSLKHG 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH  RG + +++I  LV+DEAD MLDMGFI  I+ I   VP  RQT+L
Sbjct: 126 VQVVIGTPGRLLDHLRRGTISLDHIHFLVLDEADEMLDMGFIEDIETIIKEVPPERQTML 185

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +  +S+ +++ PK + ++    TA TI+  +  T  +    C    ++L + 
Sbjct: 186 FSATMPRPILSISKKYMRTPKVVAIHKEIVTAPTIDQYYYETRDKVDGLC----RILDTT 241

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D  K  IIFC  KK V  L  +L  +G+    +HG++ Q  R +++  F++  + ++VA+
Sbjct: 242 DDCKM-IIFCRTKKGVDELVIALATRGYEAEGLHGDLSQTQRDRVMKKFRQDQVDILVAT 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV NFDVP   E+Y+HRIGRTGRAG  G A T +   + + +  IE+
Sbjct: 301 DVAARGIDIDNITHVVNFDVPQDPESYVHRIGRTGRAGNTGVALTFITPREFRQLKLIER 360

Query: 363 LIEKKVDWLNGDLSSLNPPLEK 384
            ++ K+  + G L +    LEK
Sbjct: 361 SVKTKI--IRGQLPTDANVLEK 380


>gi|255533113|ref|YP_003093485.1| DEAD/DEAH box helicase domain-containing protein [Pedobacter
           heparinus DSM 2366]
 gi|255346097|gb|ACU05423.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 444

 Score =  292 bits (747), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 157/369 (42%), Positives = 233/369 (63%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+ +++ AV DAG+ + TPIQ K I  VL   D+ GIAQTGTGKTA++VLP+L  
Sbjct: 5   FEDFNLNRQILNAVADAGFTEATPIQEKAIAPVLSGQDIFGIAQTGTGKTAAYVLPILMQ 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  +      R LIL PTRELA Q+A++ + +    +L   ++ GGI  + Q ++++ G
Sbjct: 65  LKYAQGDA--ARALILAPTRELAMQIAEHVKMFAAYTDLRSVVIFGGIGPKTQIEQIKAG 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR LD +  G +    ++ LV+DEAD+M+DMGFI  I  I  +VP  RQ LL
Sbjct: 123 VDIIIATPGRFLDIYLAGHINTQYLKFLVLDEADKMMDMGFIGSIHRILEVVPRKRQNLL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM++ +QK++ +FL+NP  IEV   ++ A T+          +  K  LLQ L+++ 
Sbjct: 183 FSATMSNLVQKIAGDFLKNPTIIEVAEQATPAATVTQTLYEV-PNFKTKINLLQHLMKND 241

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGF---SVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  K  IIFC + K V +  +S   + F   +V  IH N  Q +R+  ++NFKEG I+++
Sbjct: 242 EEFKRLIIFC-KTKTVADNIYSFITRRFGEDAVRVIHANKGQNTRINSINNFKEGNIRVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RG+D+ +V HV NFDVP   E+Y+HRIGRTGRA   G A T  +  +  +I  
Sbjct: 301 VATDVASRGIDVSEVSHVINFDVPIIIEDYVHRIGRTGRAYAKGDALTFCSPAEKYYIQK 360

Query: 360 IEKLIEKKV 368
           IEKLI +++
Sbjct: 361 IEKLIRQQI 369


>gi|254367888|ref|ZP_04983908.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
           holarctica 257]
 gi|134253698|gb|EBA52792.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
           holarctica 257]
          Length = 441

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 158/398 (39%), Positives = 249/398 (62%), Gaps = 8/398 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+  +  A+   GY KPTPIQ + IP+VL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MKFSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  +  +++   V+DEADRMLDMGFI  ++ I +L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++  FL NP+ +  +  ++T + I    + T  + +K  AL+  L+
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQK-IYTLDKSNKINALI-SLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+ +   ++F   K     +   L   G S  AIHGN  Q +R K L++FK   I ++
Sbjct: 239 KDQN-LHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+ N AE+Y+HRIGRTGRAG+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARK 395
           IE LI   +  + L G  ++ N P+    ++  N A+K
Sbjct: 358 IEHLIGHLLPREELEGFEATHNVPIT--SMSHKNKAKK 393


>gi|25027815|ref|NP_737869.1| putative cold shock DEAD-box protein A [Corynebacterium efficiens
           YS-314]
 gi|259506205|ref|ZP_05749107.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
 gi|23493098|dbj|BAC18069.1| putative cold shock DEAD-box protein A [Corynebacterium efficiens
           YS-314]
 gi|259166182|gb|EEW50736.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
          Length = 736

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 148/361 (40%), Positives = 227/361 (62%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  +V+ AV   G+  P+PIQ +TIP+++  HDV G+AQTGTGKTA+F LP+L+ 
Sbjct: 107 FDALGLPQQVLDAVRKVGFETPSPIQAQTIPVLMDGHDVVGLAQTGTGKTAAFALPVLSR 166

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++K    VR P+ L+L PTRELA QVAD+F+ +  +   L V  + GG  +  Q   L R
Sbjct: 167 IDKS---VRSPQALVLAPTRELALQVADSFQSFADHLGGLNVLPIYGGQAYGIQLSGLRR 223

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  +G L ++ +  LV+DEAD ML+MGF   ++ I +  P  +Q  
Sbjct: 224 GAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILADTPDDKQVA 283

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++S+ +L NP+ I V + + TA  I   F++    +  K   L ++L+ 
Sbjct: 284 LFSATMPNGIRRLSKQYLNNPQEISVKSETRTATNITQRFLSVA--HRNKMDALTRILEV 341

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  I+F   K     +   L  +GFS  AI+G+I Q  R + +   K+G + ++VA
Sbjct: 342 TE-FEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 400

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 401 TDVAARGLDVERISHVLNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 460

Query: 362 K 362
           +
Sbjct: 461 R 461


>gi|157691224|ref|YP_001485686.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
 gi|157679982|gb|ABV61126.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
          Length = 513

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 153/369 (41%), Positives = 230/369 (62%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS  ++ A+   G+ + TPIQ +TIPL LQ  DV G AQTGTGKTA+F +P++  
Sbjct: 22  FQDFQLSESLMKAINRMGFEEATPIQAETIPLGLQNKDVIGQAQTGTGKTAAFGIPLVEK 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     ++    +I+ PTRELA QV++   K G++    V  + GG     Q + L++ 
Sbjct: 82  IDPASPNIQ---AIIIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRSLKKN 138

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH NR  + + N+E +V+DEAD ML+MGFI  I++I S VP   QTLL
Sbjct: 139 PHIIVGTPGRLLDHINRRTMRLQNVETVVLDEADEMLNMGFIEDIESILSNVPSEHQTLL 198

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +++++E F+ NP+ ++V     T   I+  ++  + +  KK   L +LL  Q
Sbjct: 199 FSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLDIHER--KKFDTLTRLLDIQ 256

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM  L  FKEG+I ++VA+
Sbjct: 257 -SPELSIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGSIDVLVAT 315

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFDVP   E+Y+HRIGRTGRAGR G A T +   +   + AIE+
Sbjct: 316 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGRTGMAMTFITPREKDMLRAIEQ 375

Query: 363 LIEKKVDWL 371
             ++K+D +
Sbjct: 376 TTKRKMDRM 384


>gi|123443103|ref|YP_001007077.1| ATP-dependent RNA helicase RhlE [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090064|emb|CAL12927.1| putative ATP-dependent RNA helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 451

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 164/400 (41%), Positives = 245/400 (61%), Gaps = 12/400 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY+ PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L       KGR   R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    
Sbjct: 61  QLLSQDQQPIKGR---RPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I       +   ++K  L
Sbjct: 178 PAKRQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSV--HFVDKNRKREL 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L Q++  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G
Sbjct: 236 LSQMI-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ 
Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 354

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           K +  IE+L+++++  +  D    +P ++   I      R
Sbjct: 355 KLLRDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGR 394


>gi|116628939|ref|YP_814111.1| superfamily II DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238853538|ref|ZP_04643910.1| cold-shock DEAD box protein A [Lactobacillus gasseri 202-4]
 gi|311111251|ref|ZP_07712648.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           gasseri MV-22]
 gi|116094521|gb|ABJ59673.1| Superfamily II DNA and RNA helicase [Lactobacillus gasseri ATCC
           33323]
 gi|238833834|gb|EEQ26099.1| cold-shock DEAD box protein A [Lactobacillus gasseri 202-4]
 gi|311066405|gb|EFQ46745.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           gasseri MV-22]
          Length = 485

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 151/388 (38%), Positives = 241/388 (62%), Gaps = 15/388 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+++ L P+++ A+  +G+ + TPIQ KTIPLVL+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+K    ++    +++EPTRELA Q  +   + G++    V ++ GG     Q + L+
Sbjct: 61  QNLDKQHDSIQ---AIVIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGR+LDH  RG + ++ ++ +V+DEAD MLDMGFI  I++I +      QT
Sbjct: 118 QTPAILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILNYASSKHQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + ++ E F+ +P+ +++     TA  I+  FV   A+ ++K  +L +L+ 
Sbjct: 178 LLFSATMPKPILRIGEKFMHDPEIVKIKGKELTANLIDQYFVR--AKENEKFDILCRLID 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+     +IF   K+ V  L   L+ +G++   IHG++ Q  RM +L  F++G + ++V
Sbjct: 236 VQNP-DLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  I
Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTI 354

Query: 361 EKLIEKKV---------DWLNGDLSSLN 379
           E+L  KK+         +   G LS+ N
Sbjct: 355 EQLTHKKMMPLKPPTDEEAFKGQLSAAN 382


>gi|301067543|ref|YP_003789566.1| superfamily II DNA and RNA helicase [Lactobacillus casei str.
           Zhang]
 gi|300439950|gb|ADK19716.1| Superfamily II DNA and RNA helicase [Lactobacillus casei str.
           Zhang]
          Length = 502

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 149/368 (40%), Positives = 226/368 (61%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ A+  +G+ + TPIQ +TIPLVL   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFKELGLDYDLLKAIAQSGFEEATPIQAETIPLVLAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++K     R  + L++ PTRELA Q  +   + G++  + V  + GG     Q ++L 
Sbjct: 61  QNIDKAD---RSIQALVISPTRELAIQTQEELYRLGQDKKIKVQAVYGGADIRRQIRQLS 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILDH  R  L + N+++LV+DEAD MLDMGFI  I+ I   +P  RQT
Sbjct: 118 EHPQIVVGTPGRILDHIGRHTLKLQNLKVLVLDEADEMLDMGFIDDIEKIVEQMPTARQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+   + +++  F+  P  +++     TA+T+E  +V   A+  +K  ++ +L  
Sbjct: 178 LLFSATIPASIMRLTNKFMHEPVTVKIKAKELTADTVEQYYVR--AKDYEKFDVMTRLFD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     +IF   K+ V  L   L+ +G+    IHG++ Q+ RM +L  FK G +  +V
Sbjct: 236 VQDP-DLALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG  G + T V   +I+++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIEYLHTI 354

Query: 361 EKLIEKKV 368
           E L +K++
Sbjct: 355 EDLTKKRM 362


>gi|113971144|ref|YP_734937.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113885828|gb|ABI39880.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 433

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 154/370 (41%), Positives = 225/370 (60%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F      P+++ A+ D GY K TPIQ + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             + +  +       R LIL PTRELAAQVADN E Y K  N +V  + GG+  E Q +K
Sbjct: 61  QKMAENPSETLKSNARVLILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RGAD+++ TPGR+L+H     L +++I+ LV+DEADRMLDMGF   IQ I   V   R
Sbjct: 121 LKRGADIIVATPGRLLEHLTACNLSLSSIDFLVLDEADRMLDMGFNADIQKILQAVNKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  ++K++   +  P+ I  +  ++TA+T+    V    +  +K  LL +L
Sbjct: 181 QNLLFSATFSSAVKKLANEMMVKPQVISADKQNTTADTVSQ--VVYPVEQRRKRELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F   +     L   L   G     +HG   Q SR + L  F  G +++
Sbjct: 239 I-GKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFMSGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDIP + +V NFD+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLA 357

Query: 359 AIEKLIEKKV 368
            IEKLI +K+
Sbjct: 358 DIEKLIGQKI 367


>gi|194015931|ref|ZP_03054546.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Bacillus pumilus ATCC 7061]
 gi|194012286|gb|EDW21853.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Bacillus pumilus ATCC 7061]
          Length = 496

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 153/369 (41%), Positives = 230/369 (62%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS  ++ A+   G+ + TPIQ +TIPL LQ  DV G AQTGTGKTA+F +P++  
Sbjct: 5   FQDFQLSESLMKAINRMGFEEATPIQAETIPLGLQNKDVIGQAQTGTGKTAAFGIPLVEK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     ++    +I+ PTRELA QV++   K G++    V  + GG     Q + L++ 
Sbjct: 65  IDPASPNIQ---AIIIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRSLKKN 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH NR  + + N+E +V+DEAD ML+MGFI  I++I S VP   QTLL
Sbjct: 122 PHIIVGTPGRLLDHINRRTMRLQNVETVVLDEADEMLNMGFIEDIESILSNVPSEHQTLL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +++++E F+ NP+ ++V     T   I+  ++  + +  KK   L +LL  Q
Sbjct: 182 FSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLDIHER--KKFDTLTRLLDIQ 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM  L  FKEG+I ++VA+
Sbjct: 240 -SPELSIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGSIDVLVAT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFDVP   E+Y+HRIGRTGRAGR G A T +   +   + AIE+
Sbjct: 299 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGRTGMAVTFITPREKDMLRAIEQ 358

Query: 363 LIEKKVDWL 371
             ++K+D +
Sbjct: 359 TTKRKMDRM 367


>gi|45440809|ref|NP_992348.1| ATP-dependent RNA helicase RhlE [Yersinia pestis biovar Microtus
           str. 91001]
 gi|45435667|gb|AAS61225.1| Superfamily II DNA and RNA helicases [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 470

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 164/400 (41%), Positives = 245/400 (61%), Gaps = 12/400 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY+ PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 20  MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 79

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L       KGR   R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    
Sbjct: 80  QLLSQDQQPIKGR---RPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINP 136

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +
Sbjct: 137 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 196

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I       +   ++K  L
Sbjct: 197 PAKRQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSV--HFVDKNRKREL 254

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L Q++  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G
Sbjct: 255 LSQMI-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 313

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ 
Sbjct: 314 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 373

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           K +  IE+L+++++  +  D    +P ++   I      R
Sbjct: 374 KLLRDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGR 413


>gi|270265065|ref|ZP_06193328.1| cold-shock DEAD box protein A [Serratia odorifera 4Rx13]
 gi|270040999|gb|EFA14100.1| cold-shock DEAD box protein A [Serratia odorifera 4Rx13]
          Length = 655

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 148/377 (39%), Positives = 237/377 (62%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 9   FADLGLSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHN 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+   A ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 69  LD---ASLKAPQILVLAPTRELAVQVAEAMTDFSKHMTGVNVVALYGGQRYDVQLRALRQ 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 126 GPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQTA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F+++P+ + + +  +T   I   +    AQ  +K   L + L++
Sbjct: 186 LFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWT--AQGMRKNEALVRFLEA 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G+S  A++G+++Q  R + L   K+G + +++A
Sbjct: 244 ED-FDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 303 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 362

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 363 RTMKLTIPEVELPNAEL 379


>gi|114047740|ref|YP_738290.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113889182|gb|ABI43233.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 487

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 151/363 (41%), Positives = 222/363 (61%), Gaps = 4/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL   +V AV + GY  PTPIQ K IP +L   +V   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSQLGLHSALVKAVTELGYTTPTPIQTKAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +  + R +  R +IL PTRELA QV +N  +Y K   LT   + GG+    Q K+L
Sbjct: 61  HRFADAPKIRPKRVRAIILTPTRELALQVEENINQYAKYLPLTAMAMYGGVDAAPQKKRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + + +LV+DEADRMLDMGFI  I +I   +P  RQ
Sbjct: 121 IEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINSIIEKLPEQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++ ++++ + +   IE++  S+ +  I+     T     KK ALL  L+
Sbjct: 181 NLLFSATLSKQVKALAKSAIPDAIEIEISRKSAASTHIDQWL--TTVDKDKKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q ++     +IF   K     L   LEK+G    A H    Q  R ++L +FK G +  +
Sbjct: 239 Q-ENNWSQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLIDFKAGKVSFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +A+RG+DI  +  V N+D+P+ A++YIHRIGRTGRAG  G+A + V+K+D +++ A
Sbjct: 298 VATGVASRGIDIDALARVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCA 357

Query: 360 IEK 362
           IE+
Sbjct: 358 IER 360


>gi|117921427|ref|YP_870619.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117613759|gb|ABK49213.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 433

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 155/370 (41%), Positives = 228/370 (61%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F      P+++ A+ D GY K TPIQ + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  -TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             ++E     ++   R LIL PTRELAAQVADN E Y K  N +V  + GG+  E Q +K
Sbjct: 61  QKMVENPSETLKSNARVLILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RGAD+++ TPGR+L+H     L +++I+ LV+DEADRMLDMGF   IQ I   V   R
Sbjct: 121 LKRGADIIVATPGRLLEHLTACNLSLSSIDFLVLDEADRMLDMGFNADIQKILQAVNKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  ++K++ + +  P+ I  +  ++TA+T+    V    +  +K  LL +L
Sbjct: 181 QNLLFSATFSSAVKKLANDMMVKPQVISADKQNTTADTVSQ--VVYPVEQRRKRELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F   +     L   L   G     +HG   Q SR + L  F  G +++
Sbjct: 239 I-GKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDIP + +V NFD+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLA 357

Query: 359 AIEKLIEKKV 368
            IEKLI +K+
Sbjct: 358 DIEKLIGQKI 367


>gi|89256570|ref|YP_513932.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315000|ref|YP_763723.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167010034|ref|ZP_02274965.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|89144401|emb|CAJ79691.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129899|gb|ABI83086.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 441

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 158/398 (39%), Positives = 249/398 (62%), Gaps = 8/398 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+  +  A+   GY KPTPIQ + IP+VL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MKFSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  +  +++   V+DEADRMLDMGFI  ++ I +L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++  FL NP+ +  +  ++T + I    + T  + +K  AL+  L+
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQK-IYTLDKSNKINALI-SLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+ +   ++F   K     +   L   G S  AIHGN  Q +R K L++FK   I ++
Sbjct: 239 KDQN-LHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+ N AE+Y+HRIGRTGRAG+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARK 395
           IE LI   +  + L G  ++ N P+    ++  N A+K
Sbjct: 358 IEHLIGHLLPREELEGFEATHNVPIT--SMSHKNKAKK 393


>gi|294495760|ref|YP_003542253.1| DEAD/DEAH box helicase [Methanohalophilus mahii DSM 5219]
 gi|292666759|gb|ADE36608.1| DEAD/DEAH box helicase domain protein [Methanohalophilus mahii DSM
           5219]
          Length = 431

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 151/362 (41%), Positives = 231/362 (63%), Gaps = 6/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL LS  +  AV D G+ +PTPIQ ++IP +++  DV G AQTGTGKTA+F +P L
Sbjct: 4   LTFKDLNLSKDIERAVEDMGFEEPTPIQSQSIPYLMEGKDVIGQAQTGTGKTAAFGIPAL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+    +V++   L+L PTRELA QVA+   K  K  N  +  + GG P + Q K L 
Sbjct: 64  EMLDVKSKKVQV---LVLCPTRELANQVAEEMSKLAKYQNTKMLPVYGGQPIDRQIKALR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  ++I TPGRI+DH  R  L +++++++V+DEAD MLDMGF   I+ I S  P  +QT
Sbjct: 121 RGVHIVIGTPGRIMDHLQRKTLKLDDVKMVVLDEADEMLDMGFREDIEFILSRAPGKKQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   + K+++ + QNP+ ++      T   IE  +     + + K  +L +L+ 
Sbjct: 181 VLFSATMPKPIIKLTKKYQQNPQMVKTVHKKLTVPQIEQYYFEV--KDNAKTEVLCRLID 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  K+ ++FCN KKNV     +L+ +G+ V  +HG++ Q  R +++SNF++G I+ +V
Sbjct: 239 IYN-FKSSLVFCNTKKNVDKQVETLKARGYLVDGMHGDMRQAQRERVMSNFRKGEIETLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  +  VFN+D+P   E+Y+HRIGRTGRAG+ G A T    +DI+ I  I
Sbjct: 298 ATDVAARGIDVESIEAVFNYDIPQDEESYVHRIGRTGRAGKEGVAITFAFGKDIRKIKTI 357

Query: 361 EK 362
           +K
Sbjct: 358 QK 359


>gi|218132094|ref|ZP_03460898.1| hypothetical protein BACEGG_03721 [Bacteroides eggerthii DSM 20697]
 gi|217985744|gb|EEC52085.1| hypothetical protein BACEGG_03721 [Bacteroides eggerthii DSM 20697]
          Length = 392

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 151/368 (41%), Positives = 226/368 (61%), Gaps = 3/368 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL ++  ++ A+ + GYV PTPIQ K IP +L   D+ G AQTGTGKTA+F +P++
Sbjct: 21  MTFKDLNITESILKAIEEKGYVNPTPIQAKAIPALLVGKDILGCAQTGTGKTAAFAIPII 80

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  ++     + LIL PTRELA Q+++  + Y K   +   ++ GG+    Q   L 
Sbjct: 81  QQLQADKSLNNSIKALILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRTQVNMLH 140

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+LD  N+G + +NNI+  V+DEADRMLDMGFI  I+ +   +P  +QT
Sbjct: 141 KGVDILVATPGRLLDLMNQGYVRLNNIQHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQT 200

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D +  ++ + L+ P +I +   SST + IE      + +  +K  LL  +L 
Sbjct: 201 LLFSATMPDTIISLTNSLLKQPVKISITPKSSTVDAIEQTVY--FVEKKEKSKLLISILH 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++F   K N   +   L K G    AIHGN  Q +R   L NFK G I++M+
Sbjct: 259 KTQG-QSVLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQNARQSALENFKSGKIRVMI 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A +  ++E+ K ++ I
Sbjct: 318 ATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNSGTALSFCSQEERKLVNDI 377

Query: 361 EKLIEKKV 368
           +KL  KK+
Sbjct: 378 QKLTGKKL 385


>gi|238761773|ref|ZP_04622747.1| DEAD/DEAH box helicase domain protein [Yersinia kristensenii ATCC
           33638]
 gi|238699887|gb|EEP92630.1| DEAD/DEAH box helicase domain protein [Yersinia kristensenii ATCC
           33638]
          Length = 658

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 144/364 (39%), Positives = 232/364 (63%), Gaps = 6/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  ++ A+ D GY KP+PIQ++ IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 9   FADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHN 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++     ++ P+ L+L PTRELA QVA     + K+ + + V  L GG  ++ Q + L +
Sbjct: 69  ID---PTLKAPQVLVLAPTRELAIQVAQALTDFSKHMDGVNVVALYGGQRYDVQLRALRQ 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 126 GPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   F      Y+KK AL+ + L+S
Sbjct: 186 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSFWRVGGGYNKKEALV-RFLES 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 245 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLDRLKDGRLDILIA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  +E
Sbjct: 304 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNVE 363

Query: 362 KLIE 365
           + ++
Sbjct: 364 RTMK 367


>gi|332161012|ref|YP_004297589.1| ATP-dependent RNA helicase RhlE [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604884|emb|CBY26382.1| ATP-dependent RNA helicase RhlE [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665242|gb|ADZ41886.1| ATP-dependent RNA helicase RhlE [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 451

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 164/400 (41%), Positives = 245/400 (61%), Gaps = 12/400 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY+ PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L       KGR   R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    
Sbjct: 61  QLLSQDQQPIKGR---RPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I       +   ++K  L
Sbjct: 178 PAKRQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSV--HFVDKNRKREL 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L Q++  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G
Sbjct: 236 LSQMI-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ 
Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 354

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           K +  IE+L+++++  +  D    +P ++   I      R
Sbjct: 355 KLLRDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGR 394


>gi|238759754|ref|ZP_04620912.1| ATP-dependent RNA helicase rhlE [Yersinia aldovae ATCC 35236]
 gi|238701986|gb|EEP94545.1| ATP-dependent RNA helicase rhlE [Yersinia aldovae ATCC 35236]
          Length = 452

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 164/400 (41%), Positives = 245/400 (61%), Gaps = 12/400 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY+ PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L       KGR   R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    
Sbjct: 61  QLLSQDQQPIKGR---RPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I       +   ++K  L
Sbjct: 178 PAKRQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQITQSV--HFVDKNRKREL 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L Q++  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G
Sbjct: 236 LSQMI-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ 
Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 354

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           K +  IE+L+++++  +  D    +P ++   I      R
Sbjct: 355 KLLRDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGR 394


>gi|223982748|ref|ZP_03632977.1| hypothetical protein HOLDEFILI_00251 [Holdemania filiformis DSM
           12042]
 gi|223965288|gb|EEF69571.1| hypothetical protein HOLDEFILI_00251 [Holdemania filiformis DSM
           12042]
          Length = 424

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 156/368 (42%), Positives = 230/368 (62%), Gaps = 10/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L + P ++      GY  PT IQ K IP VL+  D+ G+AQTGTGKTA+F LP+L
Sbjct: 1   MKFNELPIHPSILKNCQRMGYTTPTKIQQKAIPPVLEGRDLLGLAQTGTGKTAAFALPIL 60

Query: 61  TIL----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L    +KG+   R  + L+L PTRELA Q+ DNF+ YG+   L   ++ GG+   AQ 
Sbjct: 61  DQLMKQPQKGK---RAIKALVLTPTRELAIQIVDNFQLYGQGLPLKTVVIFGGVKQGAQV 117

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L++GAD+LI TPGR+LD   +  L ++ +EI V+DEADRMLDMGFI  ++ +++L+  
Sbjct: 118 DQLKKGADILIATPGRLLDLVGQRLLDLSQVEIFVLDEADRMLDMGFIHDVKRVSALLVN 177

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +QTLLFSATM  E+  ++ + L+NP R+E    S+  E IE      Y + S+K  LL 
Sbjct: 178 KKQTLLFSATMPKEIAGLAASLLKNPVRVEATPVSTPIEKIEQRVY--YVEKSEKNDLLL 235

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L+ ++ + + ++F   K     +   L K      AIHGN  Q +R K L+ FK   I
Sbjct: 236 RVLKKEE-VTSALVFTRTKHEADRVVRFLTKGHVQAMAIHGNKSQNARQKALAAFKNHEI 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV N+++PN +E Y+HRIGRT RAG+ G A +    ++  +
Sbjct: 295 QVLVATDIAARGIDIEKLSHVINYNIPNISETYVHRIGRTARAGQEGIAISFCQNDERAY 354

Query: 357 IDAIEKLI 364
           +  IEKLI
Sbjct: 355 LKDIEKLI 362


>gi|77359594|ref|YP_339169.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76874505|emb|CAI85726.1| putative ATP-dependent RNA helicase(rhlE-like) ; DEAD-box protein
           family [Pseudoalteromonas haloplanktis TAC125]
          Length = 432

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 168/383 (43%), Positives = 233/383 (60%), Gaps = 24/383 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P ++ A+    Y +PT IQIKTIP +L   DV G AQTGTGKTA+FVLP+L  
Sbjct: 23  FSSLNLDPLLLTAIEQNNYTQPTAIQIKTIPPILAGSDVMGSAQTGTGKTAAFVLPLLHK 82

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           L       E G ARV     +IL PTRELA QV  +FEKY +  N+  AL  GG     Q
Sbjct: 83  LLNTPKKDEPGVARV-----VILTPTRELAQQVFASFEKYAQGTNIKGALAYGGASIGPQ 137

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K L + A V++ TPGR+LDH  +G +++++++ LV DEADRMLDMGFI  I+ I   +P
Sbjct: 138 IKAL-KDAQVIVATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIKRILRHIP 196

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT  D +  +S+  L+NP+ +EV+  +S A  +E         YS      
Sbjct: 197 GDRQTLLFSATFDDSVFALSKKLLKNPELVEVDKRNSAAVEVEQVI------YSVDEDRK 250

Query: 236 QQLLQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           ++L+     MKN    +IF   K+    L   + K G    +IHG+  Q +R + L NFK
Sbjct: 251 RELVSHMIGMKNWRQVLIFTRTKQMADQLAKEMCKDGLKTESIHGDKSQGARDRALQNFK 310

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLDIP +  V NF++P  AE+Y+HRIGRTGRAG  G A +LV+ +
Sbjct: 311 EGITRVLVATDVAARGLDIPTLRFVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSID 370

Query: 353 DIKHIDAIEKLIEKKV--DWLNG 373
           +   ++ IE L++ ++   WL G
Sbjct: 371 EQWLLEEIEVLLDTRLTPQWLAG 393


>gi|114048383|ref|YP_738933.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113889825|gb|ABI43876.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 433

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 154/370 (41%), Positives = 228/370 (61%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F      P+++ A+ D GY K TPIQ + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  -TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             ++E     ++   R LIL PTRELAAQVADN E Y K  N +V  + GG+  E Q +K
Sbjct: 61  QKMVENPSETLKSNARVLILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RGAD+++ TPGR+L+H     L +++++ LV+DEADRMLDMGF   IQ I   V   R
Sbjct: 121 LKRGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFNADIQKILQAVNKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  ++K++ + +  P+ I  +  ++TA+T+    V    +  +K  LL +L
Sbjct: 181 QNLLFSATFSSAVKKLANDMMVKPQVISADKQNTTADTVSQ--VVYPVEQRRKRELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F   +     L   L   G     +HG   Q SR + L  F  G +++
Sbjct: 239 I-GKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFMSGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDIP + +V NFD+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLA 357

Query: 359 AIEKLIEKKV 368
            IEKLI +K+
Sbjct: 358 DIEKLIGQKI 367


>gi|289607515|emb|CBI60784.1| unnamed protein product [Sordaria macrospora]
          Length = 404

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 149/255 (58%), Positives = 188/255 (73%), Gaps = 3/255 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS +++ +V D+GY +PTPIQ   IP VL   D+  IAQTGTGKTASFVLPM+
Sbjct: 151 MTFADLGLSDELLRSVNDSGYTEPTPIQAAAIPSVLMMRDLVAIAQTGTGKTASFVLPMI 210

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL +GR+R RMPR+LILEPTRELAAQVA+NFEKYG N+ L++ALLIGG+    Q   LE
Sbjct: 211 DILAQGRSRARMPRSLILEPTRELAAQVAENFEKYGANHKLSMALLIGGVSMGDQLAALE 270

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR++D F RGK+L+    +LVIDEADRMLDMGFIP I+ I + +P  RQT
Sbjct: 271 KGVDVLIATPGRLMDLFTRGKILLTGCSMLVIDEADRMLDMGFIPDIEEICTKLPKQRQT 330

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++ FL NPK IEV+ P+ST   I    V   A  +KK  +L+ LL 
Sbjct: 331 LLFSATMPPPIKKLADKFLDNPKTIEVSRPASTNLNISQHVVPVAA--AKKREVLRTLLA 388

Query: 241 SQDTMKNGIIFCNQK 255
            +D ++  IIFCN+K
Sbjct: 389 HED-VRTAIIFCNRK 402


>gi|296876849|ref|ZP_06900897.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           15912]
 gi|296432351|gb|EFH18150.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           15912]
          Length = 523

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 147/371 (39%), Positives = 235/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS +++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK      + + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIDVDNTVIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N+IE L++DEAD ML+MGF+  I+ I S VP TRQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + ++++   F++ P+ +++     T + ++  ++    +  +K   + +L+ 
Sbjct: 178 LLFSATMPEAIKRIGVQFMKEPEHVKIAAKELTTDLVDQYYI--RVKEGEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  IIF   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELAIIFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNVDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKTGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  +
Sbjct: 355 ENLTKKRMKGM 365


>gi|317477122|ref|ZP_07936363.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906665|gb|EFV28378.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 392

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 151/368 (41%), Positives = 226/368 (61%), Gaps = 3/368 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL ++  ++ A+ + GYV PTPIQ K IP +L   D+ G AQTGTGKTA+F +P++
Sbjct: 21  MTFKDLNITESILKAIEEKGYVNPTPIQAKAIPALLVGKDILGCAQTGTGKTAAFAIPII 80

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  R   +  + LIL PTRELA Q+++  + Y +   +   ++ GG+    Q   L 
Sbjct: 81  QQLQADRNLNKSIKALILTPTRELALQISECIDDYARYTQVCHGVIFGGVNQRTQVNMLH 140

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+LD  N+G + +NNI+  V+DEADRMLDMGFI  I+ +   +P  +QT
Sbjct: 141 KGVDILVATPGRLLDLMNQGYVRLNNIQHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQT 200

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D +  ++ + L+ P +I +   SST + IE      + +  +K  LL  +L 
Sbjct: 201 LLFSATMPDTIISLTNSLLKQPVKISITPKSSTVDAIEQTVY--FVEKKEKSKLLISILH 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++F   K N   +   L K G    AIHGN  Q +R   L NFK G I++M+
Sbjct: 259 KTQG-QSVLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQNARQSALENFKSGKIRVMI 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A +  ++E+ K ++ I
Sbjct: 318 ATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNSGTALSFCSQEERKLVNDI 377

Query: 361 EKLIEKKV 368
           +KL  KK+
Sbjct: 378 QKLTGKKL 385


>gi|259047319|ref|ZP_05737720.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175]
 gi|259036015|gb|EEW37270.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175]
          Length = 520

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 151/383 (39%), Positives = 236/383 (61%), Gaps = 13/383 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ ++   G+ + TPIQ +TIP  LQ  DV G AQTGTGKTA+F LPML
Sbjct: 12  MKFNELGLDSALLESIEKMGFEEATPIQAQTIPKALQGLDVIGQAQTGTGKTAAFGLPML 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  +  V+    L++ PTRELA Q  +   + G++  + V  + GG     Q ++L+
Sbjct: 72  QKIDPSKKGVQ---GLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADINRQIRQLK 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH +R  L +  +E LV+DEAD ML+MGF+  I++I   VP  RQT
Sbjct: 129 ENPQIVVGTPGRLLDHISRRTLKLGAVETLVLDEADEMLNMGFLEDIESIIKQVPENRQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D+++++   F+++P+ + + +   TA  I+  FV    +  +K  ++ +LL 
Sbjct: 189 LLFSATMPDDIKRIGVQFMKDPEHVRIKSNEMTATLIDQYFVK--CKDYEKFDIMTRLLD 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK   + ++V
Sbjct: 247 VQ-TPELTIVFGRTKRRVDELARGLEMRGYRAEGIHGDLSQQKRMSVLRDFKNNHLDILV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 306 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQEGMSVTFVTPNEMDYLRVI 365

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           E+L  K+       ++SL PP +
Sbjct: 366 EELTRKR-------MTSLRPPTQ 381


>gi|71065641|ref|YP_264368.1| ATP-dependent DEAD/DEAH box RNA-helicase [Psychrobacter arcticus
           273-4]
 gi|71038626|gb|AAZ18934.1| possible ATP-dependent DEAD/DEAH box RNA-helicase [Psychrobacter
           arcticus 273-4]
          Length = 567

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 145/369 (39%), Positives = 232/369 (62%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL ++  ++ A+  +GY  PTPIQ + IP  LQ  D+   AQTG+GKTA+FV+P+L  
Sbjct: 46  FTDLNIAKPILSALERSGYTHPTPIQAEAIPFALQGRDLLLSAQTGSGKTAAFVIPVLDR 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L +  +  ++ + LIL PTRELA QV D+   Y K+   L    L+GG P+  Q   L++
Sbjct: 106 LSRATSFDKLTKALILTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGAPYNGQITALKK 165

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH N G++ ++++EILV+DEADRMLDMGF   I +I    P  RQT+
Sbjct: 166 GVQVIVATPGRLLDHINAGRVDLSSLEILVLDEADRMLDMGFADDISDILRAAPIDRQTI 225

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + SAT    + K++ +F +NP+R+ +   S+   E + +C       +  K  LL +++ 
Sbjct: 226 MCSATWDGPVGKIAASFTKNPERVSIKVESAHIEEKVYYC-----DDFDHKNRLLDKIVC 280

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D M+  IIF   K++   L   L++ G     +HG++ Q  R +I+ + + G  +++V
Sbjct: 281 HKD-MEQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKCKILV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+P + HV N+D+P + E+Y+HRIGR GRAGR G A +L + +D   ++AI
Sbjct: 340 ATDVAARGLDVPALSHVINYDLPRQTEDYVHRIGRCGRAGRTGVAISLCSMDDRPQLNAI 399

Query: 361 EKLIEKKVD 369
            + +++K++
Sbjct: 400 NRYLDRKME 408


>gi|238763827|ref|ZP_04624785.1| ATP-dependent RNA helicase rhlE [Yersinia kristensenii ATCC 33638]
 gi|238697957|gb|EEP90716.1| ATP-dependent RNA helicase rhlE [Yersinia kristensenii ATCC 33638]
          Length = 452

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 164/400 (41%), Positives = 245/400 (61%), Gaps = 12/400 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY+ PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L       KGR   R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    
Sbjct: 61  QLLSQDQQPIKGR---RPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I       +   ++K  L
Sbjct: 178 PAKRQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSV--HFVDKNRKREL 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L Q++  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G
Sbjct: 236 LSQMI-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ 
Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 354

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           K +  IE+L+++++  +  D    +P ++   I      R
Sbjct: 355 KLLRDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGR 394


>gi|256829773|ref|YP_003158501.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578949|gb|ACU90085.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
           DSM 4028]
          Length = 444

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 160/393 (40%), Positives = 231/393 (58%), Gaps = 19/393 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF+      ++   + D GYV PTPIQI+ IP VL   DV G+AQTGTGKTA+F LP+L
Sbjct: 1   MDFSSFSFDQRLNVGIRDCGYVTPTPIQIQAIPSVLAGKDVLGLAQTGTGKTAAFALPLL 60

Query: 61  TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +      VR P R L+L PTRELA Q+ + F   GK   +  A + GG+  E    K 
Sbjct: 61  QRMITDGISVRGPVRVLVLAPTRELALQIHETFISLGKQTGIRSAAVFGGV-GETPQVKA 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R A VL+  PGR+LD  NRG + ++++  LV+DEADRM DMGF+P ++ I + +P  RQ
Sbjct: 120 ARQASVLVACPGRLLDLVNRGLVDLSHVNALVLDEADRMFDMGFLPDLRRIMAKLPAKRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  E++K+++  L  P  ++V+  ++  E I H      A   +K  LL+  L
Sbjct: 180 NLLFSATMPPEIRKIADQVLVQPAVVQVSN-TAPPEKIRHTLYPVSA--GQKMGLLEAYL 236

Query: 240 --QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                D +   +IF   K    +L   LE++G    ++ GN+ Q  R + L  F+ G  +
Sbjct: 237 GRTPHDCV---LIFTRTKHRAKSLARKLEQKGMLATSLQGNLSQNRRQEALDGFRSGKYR 293

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MVA+D+AARG+D   + HV NFD+P+ AE+Y HRIGRTGRA + G+A TLV+ ED   I
Sbjct: 294 IMVATDIAARGIDCVRISHVVNFDLPDTAESYTHRIGRTGRADKSGEAITLVSPEDSAQI 353

Query: 358 DAIEKLIEKKVDWL---------NGDLSSLNPP 381
           +AIE+++  +++ +          GD +S   P
Sbjct: 354 NAIERILGGRLERVRLEGFAYSSGGDEASFEEP 386


>gi|120555341|ref|YP_959692.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120325190|gb|ABM19505.1| ATP-dependent RNA helicase CsdA [Marinobacter aquaeolei VT8]
          Length = 528

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 150/363 (41%), Positives = 224/363 (61%), Gaps = 7/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+LGL P V+ AV   GY  P+PIQ ++IP +L  + + G+AQTGTGKTA+F LP+L
Sbjct: 24  LSFAELGLDPAVLEAVSAVGYETPSPIQAQSIPALLAGNHLLGVAQTGTGKTAAFALPLL 83

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           + ++   A V  P+ L+L PTRELA QVA+ F  Y   + N  V  + GG  F  Q + L
Sbjct: 84  SRID---ANVAEPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFSPQIRGL 140

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA V++ TPGR+LDH  +G L ++ ++ LV+DEAD ML MGFI  ++ I +  P T Q
Sbjct: 141 KRGAQVIVGTPGRMLDHLRKGTLKLDGLKALVLDEADEMLRMGFIDDVEAILAKTPDTCQ 200

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  +++KV++ +L+N   + + + + T E I    +  YA+  +K   L ++L
Sbjct: 201 RALFSATMPPQIKKVAQTYLKNATEVRIESETRTVERIAQFVLPVYAE--RKLDALTRIL 258

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +      IIF   K     L   L  +G +V  + G+++QR R + + + K G   ++
Sbjct: 259 EVE-PFDASIIFVRTKAETTMLAEKLSARGHAVAPLSGDLNQRQREQTVEDLKRGKKDII 317

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+P + HV N+DVP   E YIHR+GRTGRAGR GKA  LV   +   +  
Sbjct: 318 IATDVAARGLDVPRITHVINYDVPYDTEAYIHRVGRTGRAGRTGKAILLVTPRERSWLRT 377

Query: 360 IEK 362
           +E+
Sbjct: 378 LER 380


>gi|331006491|ref|ZP_08329791.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC1989]
 gi|330419691|gb|EGG94057.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC1989]
          Length = 573

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 157/428 (36%), Positives = 251/428 (58%), Gaps = 24/428 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L   ++  +++ GY  P+PIQ  +IP++ +  D+ G AQTGTGKTA+F LP+L+ 
Sbjct: 12  FSELNLPEAILKTLVELGYETPSPIQAASIPIIQEGRDLLGQAQTGTGKTAAFALPLLSK 71

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +   + P+ L+L PTRELA QVA+ F+ Y ++ + TV  + GG  ++ Q ++L+RG
Sbjct: 72  IDPTK---KHPQLLVLAPTRELAIQVAEAFQTYSRHMSCTVLPIYGGQSYDNQLRQLKRG 128

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++DH  R  L ++ +E LV+DEAD ML MGFI  ++ I    P +RQ  L
Sbjct: 129 TQIIVGTPGRVMDHIRRKTLKLDQLEALVLDEADEMLRMGFIDDVEWILEHTPKSRQIAL 188

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++KV++ +L NPK I++ T +STA TI   F  +    ++K     ++L+ +
Sbjct: 189 FSATMPKEIKKVADKYLVNPKHIKIETKTSTATTIRQRF--SIVNRNQKLDAFTRILEVE 246

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D     I+F   K   + L   L  +G S  A++G+I Q  R  I+   K GT+ +++A+
Sbjct: 247 D-FDGVIVFVRTKVATLELAEKLSARGHSCAALNGDIPQNQRENIVEKLKRGTLDILIAT 305

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ ARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   V   +   + AIE+
Sbjct: 306 DVVARGLDVKRISHVINYDIPLDTESYVHRIGRTGRAGRSGEAILFVTSRERHLLRAIER 365

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK-------NNPIPQKSTGFDRRKKNYSS 415
                      D +S+  P++    +  N  R        N+ I QK  G      N + 
Sbjct: 366 -----------DTNSVVEPMDVPSASDVNQKRAEVFKKRINDAITQKDLGIYHDIINQTI 414

Query: 416 QKSHIPLK 423
           Q++  P++
Sbjct: 415 QENDHPME 422


>gi|254502530|ref|ZP_05114681.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
 gi|222438601|gb|EEE45280.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
          Length = 430

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 155/371 (41%), Positives = 222/371 (59%), Gaps = 11/371 (2%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--EKGRARVRM 72
           A+ D GY  PTPIQ K IPL+L   D+ G+AQTGTGKTA+F LP++  L  E  RA  + 
Sbjct: 16  AIKDNGYEAPTPIQQKAIPLILDGQDLMGLAQTGTGKTAAFGLPLIERLLAEPRRAAPKG 75

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
            R LIL PTREL  Q+A N   + K   L V  ++GG+    Q K++ +G D+L+ TPGR
Sbjct: 76  TRALILAPTRELVNQIAKNLISFLKTTPLRVTSVVGGVSINGQVKRMSKGTDILVATPGR 135

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           +LD  +R  + + +   LV+DEAD+MLD+GFI  ++ I  LV   RQTLLFSATM  ++ 
Sbjct: 136 LLDLVDRNAVDLGSASYLVLDEADQMLDLGFIHALRKIAGLVAKDRQTLLFSATMPKQIN 195

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ-DTMKNGIIF 251
           ++++++L +P R+EV+    TA+ +       +     K   L  +L  Q D M   ++F
Sbjct: 196 ELAQSYLTDPARVEVSPVGRTADKVRQKV--HFMDSKAKTGFLIDVLSDQPDDMS--LVF 251

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           C  K     L   + + G +  +IHGN  Q  R + +   + G I+++VA+D+AARG+DI
Sbjct: 252 CRTKHGAERLMRKMAQAGIAAGSIHGNKSQNQRERAIKELRSGAIKVLVATDVAARGIDI 311

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
           P V HV+NF++P  AE Y+HRIGRT RAG  G A  L A E+I     IEKLI   ++  
Sbjct: 312 PGVSHVYNFELPEVAEAYVHRIGRTARAGADGDAVALCAPEEIGLFRQIEKLIGIDIEVA 371

Query: 372 NGDLSSLNPPL 382
           +G+     PPL
Sbjct: 372 SGE----APPL 378


>gi|42518357|ref|NP_964287.1| RNA helicase [Lactobacillus johnsonii NCC 533]
 gi|41582642|gb|AAS08253.1| probable RNA helicase [Lactobacillus johnsonii NCC 533]
          Length = 484

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 152/388 (39%), Positives = 239/388 (61%), Gaps = 15/388 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+++ L P+++ A+  +G+ + TPIQ KTIPLVL+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+K    ++    +I+EPTRELA Q  +   + G++    V ++ GG     Q + L+
Sbjct: 61  QNLDKQHDSIQ---AIIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGR+LDH  RG + ++ ++ +V+DEAD MLDMGFI  I++I        QT
Sbjct: 118 QTPAILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILKYASSKHQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + ++ E F+ +P+ +++     TA  I+  FV   A+ ++K  +L +L+ 
Sbjct: 178 LLFSATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFV--RAKENEKFDILCRLID 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+     +IF   K+ V  L   L+ +G++   IHG++ Q  RM +L  F++G + ++V
Sbjct: 236 VQNP-DLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P    +Y+HRIGRTGRAG++G + T V   +I ++  I
Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPNSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTI 354

Query: 361 EKLIEKKV---------DWLNGDLSSLN 379
           E+L  KK+         +   G LS+ N
Sbjct: 355 EQLTHKKMMPLKPPTDEEAFKGQLSAAN 382


>gi|307326471|ref|ZP_07605666.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306887879|gb|EFN18870.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 559

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 154/374 (41%), Positives = 223/374 (59%), Gaps = 13/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L P+++ A+   GY +PTPIQ + IP +L   D+ G A TGTGKTA+F LP+L
Sbjct: 10  IGFADLRLRPELLRALAGLGYEEPTPIQREAIPPLLDGRDLLGQAATGTGKTAAFALPVL 69

Query: 61  TILEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             + +  G A    P  L+L PTRELA Q ++   +YG++    V  + GG P   Q + 
Sbjct: 70  QRISQDGGGAE---PSALVLVPTRELAMQASEAIHRYGRDLGTRVLPVYGGQPIGRQLRA 126

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG DV++ TPGR LDH  RG L ++++E LV+DEAD MLDMGF   I  I    P  R
Sbjct: 127 LERGVDVVVATPGRALDHIGRGTLRLDSLETLVLDEADEMLDMGFAEDIDAILEGTPADR 186

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTAETIEHCFVATYAQYSKKCAL 234
           QT+LFSATM   +  ++   L+ P RI++      P  T +  +  +V   AQ   K A 
Sbjct: 187 QTVLFSATMPARIDAMARRHLRGPVRIQIEREKPAPGETPKVRQSAYVVARAQ---KPAA 243

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L ++L  + + +  I+FC  +  V  L  +L  +G+   A+HG + Q  R +++   + G
Sbjct: 244 LGRVLDVE-SPEATIVFCRTRDQVDQLTETLNGRGYRAEALHGGMGQEQRDRVMGRVRGG 302

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           T  L+VA+D+AARGLDI  + HV N+DVP+  E+Y+HRIGR GRAGR G A TL    + 
Sbjct: 303 TADLLVATDVAARGLDIEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREH 362

Query: 355 KHIDAIEKLIEKKV 368
           + + AIE+   +++
Sbjct: 363 RMLKAIERTTRRQI 376


>gi|226365506|ref|YP_002783289.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4]
 gi|226243996|dbj|BAH54344.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4]
          Length = 587

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 154/361 (42%), Positives = 224/361 (62%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +  +V+ A+ D GY  P+PIQ  TIP +L  +DV G+AQTGTGKTA+F +P+L+ 
Sbjct: 13  FADLDIDDRVLKALSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPILSK 72

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   + P+ L+L PTRELA QVA+ F KY  +   L V  + GG  +  Q   L R
Sbjct: 73  IDLTQ---KSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGLRR 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  +G L ++ +  LV+DEAD ML MGF   ++ I S  P  +Q  
Sbjct: 130 GAHVVVGTPGRVIDHLEKGTLDLSKLAYLVLDEADEMLKMGFQEDVERILSDTPEYKQVA 189

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K+S+ +L +P  I V + +STA  I   +V    Q  +K   L ++L+ 
Sbjct: 190 LFSATMPGAIRKISKQYLHDPVEITVKSKTSTASNISQRYVQVAHQ--RKLDALTRVLEV 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K+   +L   L  +GFS  AI+G+I Q  R + +   K G + ++VA
Sbjct: 248 ED-FGAMIIFVRTKQATEDLAERLRSRGFSAAAINGDIVQAQRERTIGQLKSGALDILVA 306

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G+A   VA  +   + AIE
Sbjct: 307 TDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERHLLKAIE 366

Query: 362 K 362
           K
Sbjct: 367 K 367


>gi|71280656|ref|YP_266818.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71146396|gb|AAZ26869.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 420

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 154/375 (41%), Positives = 227/375 (60%), Gaps = 5/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+   L   ++ A+ ++ Y +PT IQ ++IPL+L +HDV   AQTGTGKTA+F LP+L
Sbjct: 5   MTFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPIL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   +      R L+L PTRELA QV  +F  YG+  ++T+ +  GG+  + Q  +L+
Sbjct: 65  QQLISVQPCKPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+LI TPGR+LD      + ++NIE LV DEADRMLDMGF   I  IT  +P T+QT
Sbjct: 125 VGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D++ K+S+N L  PK +E++  +  A+ +E       A   ++   L   L 
Sbjct: 185 LLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDADRKRE---LTSFLI 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  ++F   K+   +L   + K G    AIHG+  Q +R K L  FKEG ++ ++
Sbjct: 242 GSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALI 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + HV N+++P  AE+Y+HRIGRT RAG  G A +LV+  +   + AI
Sbjct: 302 ATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLLTAI 361

Query: 361 EKLIEKKV--DWLNG 373
           E+L++ ++   WL G
Sbjct: 362 EELLDIQLLQQWLPG 376


>gi|255326780|ref|ZP_05367856.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
 gi|255295997|gb|EET75338.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
          Length = 744

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 153/376 (40%), Positives = 236/376 (62%), Gaps = 11/376 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL  +V+ A+ + GY KP+PIQ +TIPL+L+ HDV G+AQTGTGKTA+F LP L+ 
Sbjct: 68  FTDLGLDARVLAALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPALSR 127

Query: 63  LEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNK 117
           + +  A V    R  + L+L PTRELA QVA+ F  Y  +  + TV  + GG P+  Q  
Sbjct: 128 MAE-LADVNGISRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLA 186

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RGA V++ TPGR++DH  +G L ++N++ LV+DEAD ML MGF   ++ I    P +
Sbjct: 187 GLRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDS 246

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +Q  LFSATM + ++K+++ +L +P  I V   ++T+  I   ++     +S K   + +
Sbjct: 247 KQVALFSATMPNSIRKIAQQYLNDPTEIRVKAKTTTSANISQRYMQV--MHSHKLDAMTR 304

Query: 238 LLQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L+ ++   +GII F   KK    +   L+ +GF+  AI+G+I Q+ R + +   ++G I
Sbjct: 305 VLEVENY--DGIIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRI 362

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  +  V N+D+P+  E+Y+HRIGRTGRAGR G A   V   +   
Sbjct: 363 DILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYM 422

Query: 357 IDAIEKLIEKKVDWLN 372
           +  IEK   +KV+ ++
Sbjct: 423 LRQIEKATRQKVEPMH 438


>gi|149909181|ref|ZP_01897838.1| ATP-dependent RNA helicase [Moritella sp. PE36]
 gi|149807705|gb|EDM67651.1| ATP-dependent RNA helicase [Moritella sp. PE36]
          Length = 432

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 151/370 (40%), Positives = 228/370 (61%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  GL+  +  AV + GY +PTPIQ K IP +L   ++   AQTGTGKTASFVLP+L
Sbjct: 29  MPFSKFGLNKLITQAVAELGYEQPTPIQQKAIPAILSGKNLIAAAQTGTGKTASFVLPLL 88

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   K   R +  R LIL PTRELA QVA+N E+YGK+ +LT   + GG+  + Q ++L
Sbjct: 89  QMFSHKHTLRAKRIRALILTPTRELAIQVAENVEQYGKHLHLTSMAMYGGVDMDPQKQRL 148

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD  ++  L  + +E+LVIDEADRMLDMGF+  I  I   +P  RQ
Sbjct: 149 IEGVDILVATPGRLLDMAHQRALHFDELEVLVIDEADRMLDMGFVNDINKIIERLPQERQ 208

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++++++ +++  +     I +   ++TA  I+     T      K ALL  ++
Sbjct: 209 NLLFSATLSNKVRFLAKTAINYALEISIEPENTTAPEIDQWL--TVVDKDVKSALLSHMI 266

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D  K  +IF   K+    L   LEK+G    + H    Q  R ++L+ FK G +  +
Sbjct: 267 IEND-WKQALIFIETKRGAAKLVSQLEKRGIKAESFHSGRSQAMREQLLAEFKAGELSFL 325

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +A+RG+DI D+  V N+D+P    +Y+HRIGRTGRAG  G+A + V+++D +++ A
Sbjct: 326 VATGVASRGIDIDDLDRVVNYDLPEEQADYVHRIGRTGRAGASGEAISFVSRDDFRNLCA 385

Query: 360 IEKLIEKKVD 369
           IE+L++  ++
Sbjct: 386 IEQLLDHVIE 395


>gi|254229148|ref|ZP_04922567.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262395499|ref|YP_003287352.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|151938233|gb|EDN57072.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262339093|gb|ACY52887.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
          Length = 419

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 148/375 (39%), Positives = 237/375 (63%), Gaps = 6/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++FADLG+  K++  + +   V PTP+Q K+IP VL+  ++   AQTGTGKTA+F LP++
Sbjct: 3   VNFADLGIEQKLIETLSNLNIVTPTPVQEKSIPHVLEGKNLLAAAQTGTGKTAAFGLPII 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++ +     P+ L+L PTRELA QV DN  +Y     L +  + GG     Q +KLE
Sbjct: 63  QTVQQKKLN-GTPQALVLVPTRELAQQVFDNLNQYSAQTELRIVCVYGGTSIGVQKRKLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+LI TPGR+LDH   G + ++   +LV+DEADRMLDMGF P +Q I   +P  +Q 
Sbjct: 122 EGADILIATPGRLLDHLFNGNVNISKTSMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQI 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    ++ ++   +++P  +EV+  ++TAET++           +K  LL  L+ 
Sbjct: 182 LLFSATFEKRIKTIAYKLMESPVEVEVSPANTTAETVKQMVYPV--DKKRKRELLAYLIG 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++  +  ++F   K+    L   L+  G    +I+G+  Q +R + L  FK+G ++ ++
Sbjct: 240 SRN-WQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++   + AI
Sbjct: 299 ATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLHAI 358

Query: 361 EKLIEKKV--DWLNG 373
           E L+++++  +WL G
Sbjct: 359 ENLLDQRLPQEWLAG 373


>gi|332142673|ref|YP_004428411.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552695|gb|AEA99413.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 480

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 155/367 (42%), Positives = 225/367 (61%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ A+   G+  P+PIQ K IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLEGKDVLAAAQTGTGKTAGFGLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G +      R LIL PTRELAAQV ++   + +   L  A++ GG+    Q  KL
Sbjct: 61  QRLMSGPKVSANNVRALILTPTRELAAQVEESICAFSEFLPLKTAVVFGGVGINPQMIKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DVLI TPGR+LD + +  +  + +E+LV+DEADRMLDMGFI  I+ +  L+P  RQ
Sbjct: 121 RKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIKRVLKLLPEDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT +DE+  +++   +NP  I     ++T + +E   V T  +  K  AL+   L
Sbjct: 181 SLLFSATFSDEITTLAKTITRNPVSISTAPANTTVDAVEQHLV-TIDKSKKTTALI--CL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  ++F   K     +   L +      AIHGN  Q +R K L++FK G I+++
Sbjct: 238 IKQQKWEQVLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALADFKNGDIKVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI ++  V N D+PN A +Y+HRIGRTGRAG  G+A++ V+ E+++++  
Sbjct: 298 VATDIAARGIDISELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVSAEELQNLKD 357

Query: 360 IEKLIEK 366
           IE LI+K
Sbjct: 358 IETLIQK 364


>gi|239996759|ref|ZP_04717283.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126]
          Length = 596

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 151/374 (40%), Positives = 235/374 (62%), Gaps = 11/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   ++ A+   GY KP+PIQ ++IPL+L+ HD+ G AQTGTGKTA+F LPML
Sbjct: 7   MTFKDLNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPML 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
             ++      R P+ L+L PTRELA QVA+ F+ Y   +  + V  + GG  ++ Q ++L
Sbjct: 67  ANID---PEERKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGRI+DH  R  L ++ ++ LV+DEAD ML MGFI  ++ I S  P  RQ
Sbjct: 124 KRGVQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPEERQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQ 237
           T LFSATM   ++K+++ +L++PK +++ +  STA TI   +C +A +     K   L +
Sbjct: 184 TALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPH----HKLEALTR 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++ +      IIF   K   V L   L  +G+ V  ++G+I Q +R + +   K+G I 
Sbjct: 240 IMEVE-VFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKID 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARGLD+  V HV N+D+P  +E+Y+HRIGRTGRAGR G A   ++  + + +
Sbjct: 299 ILVATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLL 358

Query: 358 DAIEKLIEKKVDWL 371
            +IEK  ++ ++ +
Sbjct: 359 FSIEKTTKQPIEAM 372


>gi|218676562|ref|YP_002395381.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218324830|emb|CAV26551.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 423

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 155/406 (38%), Positives = 246/406 (60%), Gaps = 14/406 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  ++  + +  +  PT +Q + IPLVL+  DV   AQTGTGKTA+F LP++  
Sbjct: 8   FNQLGLSEHLLATLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLPIIQR 67

Query: 63  LEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L + +  V    ++ R L+L PTRELA QV DN   Y K  ++ V +  GG+  + Q + 
Sbjct: 68  LIETKDNVIPNPKLVRALVLVPTRELAQQVFDNVTSYAKGTDIKVVVAYGGVSMKVQTEN 127

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  GAD+L+ TPGR++DH     +++++ E+LV+DEADRMLDMGF+P I+ I S +   R
Sbjct: 128 LRGGADILVATPGRLIDHMFTKNIMLSHTEVLVLDEADRMLDMGFMPDIKRILSRMNEVR 187

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSAT  ++++ ++   +Q+P  I+V   +STA+T+           S+K  LL  L
Sbjct: 188 QTLFFSATFDNKIKALAHRMMQSPSEIQVTPKNSTADTVTQMVYPV--DKSRKSELLAYL 245

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S++  +  ++F   K+    L   L+  G    +I+G+  Q +R K L +FK G ++ 
Sbjct: 246 IGSKN-WQQVLVFTKTKQGTDALVKELKLDGIKAASINGDKSQGARQKALDDFKSGKVRA 304

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L+++++   + 
Sbjct: 305 LIATDVAARGIDIQQLEQVVNYDMPFKAEDYVHRIGRTGRAGNSGLAISLMSQDEAYLLG 364

Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
            IE+L++ ++  +WL G      P LEK D+A     R  +   +K
Sbjct: 365 DIERLLDTRLPQEWLEG----FEPSLEK-DLAPDRGGRSKSRSSEK 405


>gi|84393512|ref|ZP_00992267.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
 gi|84375865|gb|EAP92757.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
          Length = 423

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 156/406 (38%), Positives = 245/406 (60%), Gaps = 14/406 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS +++  + +  +  PT +Q + IPLVL+  DV   AQTGTGKTA+F LP++  
Sbjct: 8   FNQLGLSEQLLTTLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLPIIQR 67

Query: 63  LEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L + +  V    ++ R L+L PTRELA QV DN   Y K  ++ V +  GG+  + Q   
Sbjct: 68  LIETKDNVIPNPKLVRALVLVPTRELAQQVFDNVTSYAKGTDIKVVVAYGGVSMKVQTDN 127

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  GAD+L+ TPGR++DH     ++++  E+LV+DEADRMLDMGF+P I+ I S +   R
Sbjct: 128 LRGGADILVATPGRLIDHMFTKNIMLSQTEVLVLDEADRMLDMGFMPDIKRILSRMNDVR 187

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSAT  ++++ ++   +Q+P  I+V   +STA+T+           S+K  LL  L
Sbjct: 188 QTLFFSATFDNKIKALAHRMMQSPSEIQVTPKNSTADTVTQMVYPV--DKSRKSELLAYL 245

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S++  +  ++F   K+    L   L+  G    +I+G+  Q +R K L +FK G ++ 
Sbjct: 246 IGSKN-WQQVLVFTKTKQGTDALVKELKLDGIKAASINGDKSQGARQKALDDFKSGKVRA 304

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L+++++   + 
Sbjct: 305 LIATDVAARGIDIQQLEQVVNYDMPFKAEDYVHRIGRTGRAGNTGLAISLMSQDEAYLLG 364

Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
            IE+L++ ++  +WL G      P LEK DIA     R  +   +K
Sbjct: 365 DIERLLDTRLPQEWLEG----FEPSLEK-DIAPDRGGRSKSRSSEK 405


>gi|157150549|ref|YP_001450886.1| DEAD-box ATP dependent DNA helicase [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157075343|gb|ABV10026.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 523

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 146/372 (39%), Positives = 234/372 (62%), Gaps = 6/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQ---ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L ++ IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    + ++K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLN 372
           E L +K++  L 
Sbjct: 355 ENLTKKRMKGLK 366


>gi|16611843|gb|AAL27386.1|AF426171_17 RhlE [Yersinia pestis]
          Length = 421

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 164/400 (41%), Positives = 245/400 (61%), Gaps = 12/400 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY+ PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L       KGR   R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    
Sbjct: 61  QLLSQDQQPIKGR---RPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I       +   ++K  L
Sbjct: 178 PAKRQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSV--HFVDKNRKREL 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L Q++  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G
Sbjct: 236 LSQMI-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ 
Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 354

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           K +  IE+L+++++  +  D    +P ++   I      R
Sbjct: 355 KLLRDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGR 394


>gi|51595558|ref|YP_069749.1| ATP-dependent RNA helicase RhlE [Yersinia pseudotuberculosis IP
           32953]
 gi|108807091|ref|YP_651007.1| ATP-dependent RNA helicase RhlE [Yersinia pestis Antiqua]
 gi|108812974|ref|YP_648741.1| ATP-dependent RNA helicase RhlE [Yersinia pestis Nepal516]
 gi|153950333|ref|YP_001401773.1| ATP-dependent RNA helicase RhlE [Yersinia pseudotuberculosis IP
           31758]
 gi|166211637|ref|ZP_02237672.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167400295|ref|ZP_02305808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167423922|ref|ZP_02315675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|170025120|ref|YP_001721625.1| ATP-dependent RNA helicase RhlE [Yersinia pseudotuberculosis YPIII]
 gi|186894614|ref|YP_001871726.1| ATP-dependent RNA helicase RhlE [Yersinia pseudotuberculosis PB1/+]
 gi|229894068|ref|ZP_04509254.1| putative ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|229903411|ref|ZP_04518524.1| putative ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|294503186|ref|YP_003567248.1| DEAD/DEAH box helicase [Yersinia pestis Z176003]
 gi|51588840|emb|CAH20454.1| putative ATP-dependent RNA helicase rhlE [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776622|gb|ABG19141.1| DEAD/DEAH box helicase [Yersinia pestis Nepal516]
 gi|108779004|gb|ABG13062.1| DEAD/DEAH box helicase [Yersinia pestis Antiqua]
 gi|152961828|gb|ABS49289.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia
           pseudotuberculosis IP 31758]
 gi|166207408|gb|EDR51888.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167050244|gb|EDR61652.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167056771|gb|EDR66534.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169751654|gb|ACA69172.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186697640|gb|ACC88269.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679181|gb|EEO75284.1| putative ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|229703953|gb|EEO90966.1| putative ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|262361223|gb|ACY57944.1| DEAD/DEAH box helicase [Yersinia pestis D106004]
 gi|294353645|gb|ADE63986.1| DEAD/DEAH box helicase [Yersinia pestis Z176003]
          Length = 451

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 164/400 (41%), Positives = 245/400 (61%), Gaps = 12/400 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY+ PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L       KGR   R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    
Sbjct: 61  QLLSQDQQPIKGR---RPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I       +   ++K  L
Sbjct: 178 PAKRQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSV--HFVDKNRKREL 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L Q++  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G
Sbjct: 236 LSQMI-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ 
Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 354

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           K +  IE+L+++++  +  D    +P ++   I      R
Sbjct: 355 KLLRDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGR 394


>gi|108759595|ref|YP_632093.1| RNA helicase DeaD [Myxococcus xanthus DK 1622]
 gi|108463475|gb|ABF88660.1| RNA helicase DeaD [Myxococcus xanthus DK 1622]
          Length = 602

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 154/368 (41%), Positives = 216/368 (58%), Gaps = 2/368 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +V A+   GY +PTPIQ   +P +L   D+ GIA TGTGKTA+F LP+L  
Sbjct: 46  FDSLGLKPALVEALSALGYEEPTPIQAAALPPLLAGKDLLGIAATGTGKTAAFALPLLNH 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E G  R      L+L PTRELA QV++   +YG+   ++V  L GG     Q + L+RG
Sbjct: 106 VEPGACRPNTTSALVLVPTRELAMQVSEAIHRYGQKLGISVLPLYGGQVIGQQLRVLKRG 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR LDH  RG L ++++ ++V+DEAD MLDMGF   ++ I S  P  RQT L
Sbjct: 166 VDVVVATPGRALDHLRRGTLQLDDVRVVVLDEADEMLDMGFAEDLEAILSGTPEDRQTAL 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQS 241
           FSAT+   +  ++E  L  P R+++         I       Y    + K A L +LL  
Sbjct: 226 FSATLPPRIASIAERHLHEPVRVKIAREKVEQGEIPRVRQTAYVVPRAFKIATLGRLLDV 285

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      IIFC  +  V +L  SL  +G+   A+HG + Q  R +++   K     L+VA
Sbjct: 286 ESPTA-AIIFCRTRTEVDDLTVSLNGRGWRAHALHGGMTQEQRDRVIKQLKSQGTDLLVA 344

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP + HV NFDVPN  E Y+HRIGRTGRAGR G A TLV   + + +  IE
Sbjct: 345 TDVAARGLDIPRLSHVVNFDVPNAPEAYVHRIGRTGRAGREGVAITLVEPREHRLLRNIE 404

Query: 362 KLIEKKVD 369
           ++  ++++
Sbjct: 405 RVTGQRIE 412


>gi|269795126|ref|YP_003314581.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269097311|gb|ACZ21747.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542]
          Length = 614

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 146/369 (39%), Positives = 223/369 (60%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL  +++ AVLD G+  P+ IQ K IP +L  +D+ G+AQTGTGKTA+F LPML
Sbjct: 30  ITFADLGLPAELLSAVLDLGFTVPSTIQEKAIPALLAGNDITGVAQTGTGKTAAFGLPML 89

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             ++     +R  + L+L PTRELA QVA+  E + K+   + V  + GG P+  Q + L
Sbjct: 90  AAVDP---ELRRTQALVLAPTRELAMQVAEAIETFAKHLPGIEVVPVYGGSPYPPQARAL 146

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR++DH  RG L + +I  LV+DEAD ML MGF   ++ I    P  RQ
Sbjct: 147 SRGAQIVVGTPGRVIDHLERGTLKLGDIRFLVLDEADEMLRMGFAEDVEKIFGAAPTERQ 206

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  ++++V+++ ++ P  I V+  SST  ++   +      +  K   L ++L
Sbjct: 207 VALFSATMPPQIRRVAQHHMRQPVEIAVSRQSSTVTSVTQQYA--VVPFRHKVGSLTRVL 264

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + D     I+FC  +     +  +L ++G S   I G++ Q+ R KI+   + G + ++
Sbjct: 265 ATSDA-DAAIVFCRTRGAAEEVGSALIERGISAATISGDVAQKDREKIVERLRAGALDVL 323

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +G V NFD+P   E Y+HRIGRTGRAGR G A + V   +   +  
Sbjct: 324 VATDVAARGLDVDRIGLVVNFDIPGEPEAYVHRIGRTGRAGRTGVALSFVTPNERGRLKQ 383

Query: 360 IEKLIEKKV 368
           IE+ I +++
Sbjct: 384 IERTIRQQL 392


>gi|56963965|ref|YP_175696.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
 gi|56910208|dbj|BAD64735.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
          Length = 537

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 151/363 (41%), Positives = 226/363 (62%), Gaps = 7/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +S +V  A+ D G+ +P+PIQ K IP +L   DV G AQTGTGKTA+F +P++  
Sbjct: 4   FTDFDISDQVKQAIQDMGFEEPSPIQEKAIPAILTGGDVIGQAQTGTGKTAAFGIPVVDK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + + R      + LIL PTRELA QV+   +K   +  +    + GG     Q K L +G
Sbjct: 64  VTEER----YIQALILTPTRELAIQVSGELQKLSAHKRIRTLPIYGGQSIGHQIKALRQG 119

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH  RG L +N++  +V+DEAD MLDMGF+  I+ I   V   RQTLL
Sbjct: 120 VQVVIGTPGRMLDHLRRGTLKLNSVHTVVLDEADEMLDMGFVDDIEAILKEVNQVRQTLL 179

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   ++K+S  ++ +PK + +N    TA +I   +     +   K   L +++ S 
Sbjct: 180 FSATMPPAIRKLSRKYMNDPKTVTINKGEVTAPSINQVYYKVLER--NKIDSLCRIIDSD 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D ++ GI+FC  KK V  L  +L+ +G+ V  +HG++ Q  R  ++  F++ +I+ ++A+
Sbjct: 238 D-VELGILFCRTKKGVAELTEALQARGYLVDGLHGDLTQSQRDVVMKKFRDSSIEFLIAT 296

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+D+ +V HV N+D+P   E+Y+HRIGRTGRAGR G A TLV   ++KH+ +IEK
Sbjct: 297 DVAARGIDVENVTHVINYDIPQDPESYVHRIGRTGRAGRTGAAITLVTPREMKHLRSIEK 356

Query: 363 LIE 365
            I+
Sbjct: 357 EIK 359


>gi|238794074|ref|ZP_04637691.1| ATP-dependent RNA helicase rhlE [Yersinia intermedia ATCC 29909]
 gi|238726579|gb|EEQ18116.1| ATP-dependent RNA helicase rhlE [Yersinia intermedia ATCC 29909]
          Length = 451

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 164/400 (41%), Positives = 245/400 (61%), Gaps = 12/400 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY+ PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L       KGR   R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    
Sbjct: 61  QLLSLDQQPIKGR---RPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I       +   ++K  L
Sbjct: 178 PAKRQNLLFSATFSDEIKGLASKLLNNPASVEVARRNTASEQIAQSV--HFVDKNRKREL 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L Q++  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G
Sbjct: 236 LSQMI-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ 
Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 354

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           K +  IE+L+++++  +  D    +P ++   I      R
Sbjct: 355 KLLRDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGR 394


>gi|157960395|ref|YP_001500429.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157845395|gb|ABV85894.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 623

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 149/367 (40%), Positives = 229/367 (62%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL+  +V A+ D GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L  
Sbjct: 8   FRELGLTESLVRALDDLGYEKPTPIQAASIEPLMANKDILGQAQTGTGKTGAFALPLLNS 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++        P+ L+L PTRELA QVA+ F  Y K    L V  + GG   + Q   L R
Sbjct: 68  IDPN---TNAPQILVLAPTRELAVQVAEAFASYAKYMKGLHVLPIYGGQSMQQQLNALRR 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH  RG L ++ ++ +V+DEAD ML MGFI  I+ I    P TRQ  
Sbjct: 125 GPQIIVGTPGRVMDHMRRGTLKLDTLKAMVLDEADEMLKMGFIDDIEWILEHTPKTRQLA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +++++V+  +L NP  +++   +ST ETIE  FV   +Q++K  AL++ +L+ 
Sbjct: 185 LFSATMPEQIKRVANKYLDNPVHVKIAATTSTVETIEQRFVQV-SQHNKLEALVR-VLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T +  IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++A
Sbjct: 243 EKT-EGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAIEQLKRGQLDIIIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +GHV N+D+P   E Y+HRIGRTGRAGR G A   V   +++ +  IE
Sbjct: 302 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIE 361

Query: 362 KLIEKKV 368
           +    ++
Sbjct: 362 RATNSRI 368


>gi|238788773|ref|ZP_04632564.1| ATP-dependent RNA helicase rhlE [Yersinia frederiksenii ATCC 33641]
 gi|238723078|gb|EEQ14727.1| ATP-dependent RNA helicase rhlE [Yersinia frederiksenii ATCC 33641]
          Length = 451

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 164/400 (41%), Positives = 245/400 (61%), Gaps = 12/400 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY+ PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L       KGR   R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    
Sbjct: 61  QLLSQNQQPIKGR---RPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I       +   ++K  L
Sbjct: 178 PAKRQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSV--HFVDKNRKREL 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L Q++  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G
Sbjct: 236 LSQMI-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ 
Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 354

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           K +  IE+L+++++  +  D    +P ++   I      R
Sbjct: 355 KLLRDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGR 394


>gi|332140113|ref|YP_004425851.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550135|gb|AEA96853.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 589

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 151/374 (40%), Positives = 236/374 (63%), Gaps = 11/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   ++ A+   GY KP+PIQ ++IPL+L+ HD+ G AQTGTGKTA+F LPML
Sbjct: 7   MTFKDLNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPML 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
             ++  +   R P+ L+L PTRELA QVA+ F+ Y   +  + V  + GG  ++ Q ++L
Sbjct: 67  ANIDPEQ---RKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGRI+DH  R  L ++ ++ LV+DEAD ML MGFI  ++ I S  P  RQ
Sbjct: 124 KRGVQVVVGTPGRIIDHIKRKTLDLSELKYLVLDEADEMLRMGFIDDVELILSHAPEERQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQ 237
           T LFSATM   ++K+++ +L++PK +++ +  STA TI   +C +A +     K   L +
Sbjct: 184 TALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPH----HKLEALTR 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++ +      IIF   K   V L   L  +G+ V  ++G+I Q +R + +   K+G I 
Sbjct: 240 IMEVE-VFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKID 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARGLD+  V HV N+D+P  +E+Y+HRIGRTGRAGR G A   ++  + + +
Sbjct: 299 ILVATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLL 358

Query: 358 DAIEKLIEKKVDWL 371
            +IEK  ++ ++ +
Sbjct: 359 FSIEKTTKQPIEAM 372


>gi|300692069|ref|YP_003753064.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
           RNA helicase(C-terminal) (rhlE-like) [Ralstonia
           solanacearum PSI07]
 gi|299079129|emb|CBJ51797.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
           RNA helicase(C-terminal) (rhlE-like) [Ralstonia
           solanacearum PSI07]
          Length = 614

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 152/385 (39%), Positives = 232/385 (60%), Gaps = 23/385 (5%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LGL  ++V A+ +  Y +PTP+Q + IP  L   D+   +QTG+GKTA+F+LP +  + +
Sbjct: 35  LGLDERIVRALGEVNYTQPTPVQAQAIPACLSGSDLLVTSQTGSGKTAAFMLPAIQRISE 94

Query: 66  G-------------RARVRMPRT-------LILEPTRELAAQVADNFEKYGKNYNLTV-A 104
                         R + R PR        L+L PTRELA QV     +YG++    V A
Sbjct: 95  QPEPQRPRADGPPQRVKGRRPRPSPAKPSLLVLTPTRELALQVTTAASQYGRHLRRIVCA 154

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
            ++GG+P+  Q   L R  D++I TPGR+LDH + G++ ++ +++LV DEADRMLDMGF 
Sbjct: 155 SILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFA 214

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
             I+ I    P TRQ L+FSATM   +++++E  +++P+RIE+         IE     T
Sbjct: 215 DDIEAIVGATPATRQMLMFSATMDRRIEQLAERMMRDPQRIEIAAAKIDQSNIEERLHFT 274

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
               S K  LL  LL+   T+K  I+F   K++  +L   L + GFS  A+HG++ Q +R
Sbjct: 275 -DDLSHKQQLLDHLLRDA-TLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQGAR 332

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + L+  + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR G 
Sbjct: 333 NRTLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGI 392

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVD 369
           A  LV   D      IE+ +++++D
Sbjct: 393 AINLVNHGDTFQWRRIERFVDRRID 417


>gi|148239434|ref|YP_001224821.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7803]
 gi|147847973|emb|CAK23524.1| Putative ATP-dependent RNA helicase [Synechococcus sp. WH 7803]
          Length = 399

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 151/345 (43%), Positives = 216/345 (62%), Gaps = 4/345 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG-RARVRMPRTLIL 78
           GY  P+PIQ + IP V+   DV   AQTGTGKTA F LP+L  L  G RA     R L+L
Sbjct: 8   GYSHPSPIQAQAIPAVIDGRDVMAAAQTGTGKTAGFTLPVLERLRHGKRAGRAQIRALVL 67

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELAAQV +N + Y ++  L   ++ GG+    Q  +L  G D+L+ TPGR+LD   
Sbjct: 68  TPTRELAAQVLENVKAYSRHLPLRSDVVFGGVKANPQIDRLRGGVDLLVATPGRLLDLHQ 127

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +G L  + +E LV+DEADRMLDMGFI  I+ +  L+P  RQTLLFSAT +  ++K++   
Sbjct: 128 QGALRFDQLECLVLDEADRMLDMGFIHDIRRLIRLMPAKRQTLLFSATFSAPIRKLASGL 187

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           L +P  ++V   + TA ++E   V      ++K  LL  L+++ +  +  ++F   K   
Sbjct: 188 LHDPVHLQVTPENQTARSVEQ--VVHPCDMARKSDLLSHLIRTGE-WRQVLVFSRTKHGA 244

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +   L K+G +  AIHGN  Q +R + L  FK+G+++++VA+D+AARG+DI  + HV 
Sbjct: 245 NRVADRLNKEGLAAAAIHGNKSQGARTRALQGFKQGSVRVLVATDIAARGIDIQQLPHVV 304

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           N D+PN AE+Y+HRIGRTGRAG  G A +LVA E+   + AIE+L
Sbjct: 305 NLDLPNVAEDYVHRIGRTGRAGETGHAVSLVAAEEALLLKAIERL 349


>gi|182418672|ref|ZP_02949948.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
 gi|237669697|ref|ZP_04529674.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377449|gb|EDT75004.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
 gi|237654771|gb|EEP52334.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 524

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 153/369 (41%), Positives = 225/369 (60%), Gaps = 12/369 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   +V A+ D G+ KP+ IQ ++IP+ L   D+ G AQTGTGKTA++ LP+LT 
Sbjct: 6   FATLGLKESIVRAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSLPILTK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +   +      + LIL PTRELA QV D   +  K     +  + GG   + Q + L +G
Sbjct: 66  MSTNKG----IKALILAPTRELAVQVKDEMNRLSKYEKAEILAVYGGDSIDRQIRALRKG 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR+LD   R  L ++++E LV+DEAD ML+MGFI  I++I S  P  RQTLL
Sbjct: 122 VDVVVGTPGRMLDLIKRKCLHLDSVEFLVLDEADEMLNMGFIDDIESILSHTPEERQTLL 181

Query: 183 FSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKK--CALLQQLL 239
           FSATM D + K+++ +++ + K + V   S T   IE  +     ++  +  C LL    
Sbjct: 182 FSATMPDPIAKLAKRYMKPDAKLVSVKKSSLTVSKIEQSYFMINNKHRLEALCRLLDL-- 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D   + IIFC  K+ V  L   L+ +G+ V  +HG++ Q  R+  LS FKEGT+ L+
Sbjct: 240 ---DNPSSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLSKFKEGTLNLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+  V HVFN+D+P   E+Y+HRIGRTGRA R G A++LV  +D   +  
Sbjct: 297 IATDVAARGIDVDGVTHVFNYDLPQDVESYVHRIGRTGRANREGTAYSLVTPKDFSMLKQ 356

Query: 360 IEKLIEKKV 368
           I+K+ +  +
Sbjct: 357 IQKVTKSAI 365


>gi|116671594|ref|YP_832527.1| DEAD/DEAH box helicase domain-containing protein [Arthrobacter sp.
           FB24]
 gi|116611703|gb|ABK04427.1| ATP-dependent RNA helicase CsdA [Arthrobacter sp. FB24]
          Length = 747

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 151/375 (40%), Positives = 230/375 (61%), Gaps = 9/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+  +V+ A+ D GY KP+PIQ  TIPL+L+  DV G+AQTGTGKTA+F +P L+ 
Sbjct: 92  FADLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSR 151

Query: 63  LEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
           L +        R  + L+L PTRELA QVA+ F  Y K+ +  TV  + GG  +  Q   
Sbjct: 152 LAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAG 211

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RGA V++ TPGR++DH ++G L ++ ++ LV+DEAD ML MGF   ++ I    P  R
Sbjct: 212 LRRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQTPSDR 271

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q  LFSATM  +++++S+ +L NP  I V + ++T       ++     +  K   L ++
Sbjct: 272 QVALFSATMPSQIRRMSKQYLNNPAEISVKSKTTTGANTRQRYLQVMGPH--KLDALTRI 329

Query: 239 LQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ ++   +G+I F   K    +L   L+ +GF   AI+G+I Q+ R + +   KEG I 
Sbjct: 330 LEVEEF--DGVIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRID 387

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   +   +   +
Sbjct: 388 ILVATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLL 447

Query: 358 DAIEKLIEKKVDWLN 372
            +IEK   + V+ ++
Sbjct: 448 RSIEKATRQPVEQMH 462


>gi|107102390|ref|ZP_01366308.1| hypothetical protein PaerPA_01003452 [Pseudomonas aeruginosa PACS2]
 gi|296388673|ref|ZP_06878148.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 556

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 149/369 (40%), Positives = 236/369 (63%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+ P V+ A++  GY +P+PIQ ++IPL+L+ HD+ G AQTGTGKTA+F LP+L+ 
Sbjct: 8   FAALGIHPNVLAAIVAVGYEEPSPIQAQSIPLILEGHDMIGQAQTGTGKTAAFALPLLSR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  R   R P+ L+L PTRELA QVA   E Y K    + V  + GG P   Q K L +
Sbjct: 68  IDPSR---REPQMLVLVPTRELALQVATACETYSKQLPGVGVVAVYGGAPMGPQLKALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGR+ DH  R + L+  ++ LV+DEAD ML +GF+  ++ I   +P +RQT+
Sbjct: 125 GAQILVATPGRLCDHLRRDEKLLATVQRLVLDEADEMLKLGFMDDLEVIFEALPESRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L+ PK +++   + T   IE   +  +A   +K   +Q+LL+ 
Sbjct: 185 LFSATLPASIRGIAERHLKQPKHVKIAAKTQTVARIEQVHLMVHA--DQKAGSIQRLLEV 242

Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D +   I F   K+  ++    LE+QG+   A++G++ Q  R +++ + K+G++ ++
Sbjct: 243 EQFDAL---IAFVRTKQATLDYAELLERQGYRAAALNGDMPQAQRERVIESLKDGSLDIV 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+P + HV N D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  
Sbjct: 300 IATDVAARGLDVPRITHVLNIDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359

Query: 360 IEKLIEKKV 368
           IE++  +KV
Sbjct: 360 IERVTGQKV 368


>gi|294789414|ref|ZP_06754651.1| 3-hydroxyisobutyrate dehydrogenase family protein [Simonsiella
           muelleri ATCC 29453]
 gi|294482627|gb|EFG30317.1| 3-hydroxyisobutyrate dehydrogenase family protein [Simonsiella
           muelleri ATCC 29453]
          Length = 471

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 151/371 (40%), Positives = 233/371 (62%), Gaps = 8/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++  A+ + GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 26  FSQLGLGQEITSALAEQGYETPTPIQATAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 85

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 86  LKRYANASTSPAMHPVRMLVLTPTRELADQIDQNTQNYIKNLPLRHTVLFGGVNMDKQTT 145

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 146 DLRTGCEIVVATVGRLLDHIKQKNINLNKVEIVVLDEADRMLDMGFIDDIRQIMQMLPRP 205

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT    ++K++++F+ +P+ +EV   ++T   +E   +A  A Y K+  L + 
Sbjct: 206 RQTLLFSATFAPAIRKLAQDFMNSPETVEVAAQNATNANVEQHVIAVDA-YRKRELLERL 264

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  Q  M   I+FC  K++   +   L ++G S  AIHG+  Q++R+ +LS FK G ++
Sbjct: 265 IVDLQ--MPQVIVFCKTKQSADQVARDLVRRGLSANAIHGDKSQQTRLDVLSQFKSGELR 322

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P +AE+Y+HRIGRTGRAG  G A +++   + K  
Sbjct: 323 VLVATDVAARGLDIAELPFVINYELPTQAEDYVHRIGRTGRAGADGVAISMMDDNEQKMY 382

Query: 358 DAIEKLIEKKV 368
            +I +LI +++
Sbjct: 383 FSINELIGQEL 393


>gi|149186749|ref|ZP_01865060.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
 gi|148829657|gb|EDL48097.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
          Length = 455

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 156/375 (41%), Positives = 222/375 (59%), Gaps = 8/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS  V+ A+   GY  PTPIQ + IP VL+  D+ GIAQTGTGKTA+F+LP +  
Sbjct: 4   FTDLGLSQPVLQALDIKGYTTPTPIQAQAIPPVLEGRDLMGIAQTGTGKTAAFMLPSIDR 63

Query: 63  LEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L     ++  +  R LIL PTRELA Q+AD+ + YG    L V  ++GG        KL 
Sbjct: 64  LRDADKQSPFKSCRMLILAPTRELAGQIADSAKDYGALAGLKVHSIVGGTSVNKDRNKLH 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+LD  ++    ++ +EIL++DEAD+MLD+GFI  ++ I+ LVP  RQT
Sbjct: 124 RGTDILVATPGRLLDLIDQKAFTLDKVEILILDEADQMLDLGFIHALRKISELVPDDRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL- 239
           L FSATM  ++Q++   + +NP ++ V   S+TAE I+        Q  +K  LL+ +L 
Sbjct: 184 LFFSATMPKQIQELVGKYCRNPVKVSVTPESTTAERIDQYLF--MVQQDEKQTLLEMILS 241

Query: 240 ---QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
              Q     +  +IF   K     +   L + G    AIHGN  Q  R + L  FK    
Sbjct: 242 ERHQVPGKFERVLIFARTKHGCDRIVKKLGQSGIPANAIHGNKSQPQRERALDEFKRAKT 301

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DIP V HV N+++PN  E Y+HRIGRT RAGR G A    A+++  +
Sbjct: 302 PILVATDVAARGIDIPGVSHVLNYELPNVPEQYVHRIGRTARAGRDGVAIAFCAEDERDY 361

Query: 357 IDAIEKLIEKKVDWL 371
           +  I K  + + + L
Sbjct: 362 LKDIRKKTDAEFERL 376


>gi|227501650|ref|ZP_03931699.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
 gi|306835824|ref|ZP_07468821.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
 gi|227077675|gb|EEI15638.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
 gi|304568298|gb|EFM43866.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
          Length = 623

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 149/385 (38%), Positives = 237/385 (61%), Gaps = 13/385 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  K++ AV   G+  P+PIQ +TIP++++  DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 57  FEHLGLPDKILQAVAKVGFTTPSPIQAETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQ 116

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+    + R P+ L+L PTRELA QVAD F+ + +    + V  + GG  +  Q   L R
Sbjct: 117 LD---PQARHPQALVLAPTRELALQVADAFQSFAETLKGIEVLPIYGGQAYGIQLSGLRR 173

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  +G L ++ ++ LV+DEAD ML+MGF   ++ I    P  +Q  
Sbjct: 174 GAQVIVGTPGRVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILESTPDRKQVA 233

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ- 240
           LFSATM + ++++S+ +L NP  + V +   T + I+  F+     +  K     ++L+ 
Sbjct: 234 LFSATMPNAIRRLSKQYLHNPAEVTVKSERRTNDNIKQRFL--LIPHRAKMDAFTRILEV 291

Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + D +   I+FC  K     +  +L  +G+S  AI+G+I Q  R + +   K+G + ++
Sbjct: 292 ITYDAI---IVFCRTKHETEEVAEALRDRGYSAAAINGDIAQAQRERTVDQLKDGRLDIL 348

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV NFD+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +
Sbjct: 349 VATDVAARGLDVERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRS 408

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE++   +++ +  DL S++   EK
Sbjct: 409 IERVTNARLEEM--DLPSVDEVNEK 431


>gi|295402561|ref|ZP_06812510.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112527|ref|YP_003990843.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1]
 gi|294975409|gb|EFG51038.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217628|gb|ADP76232.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1]
          Length = 465

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 154/369 (41%), Positives = 231/369 (62%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS +++ A+   G+ + TPIQ +TIPL LQ  DV G AQTGTGKTA+F +P++  
Sbjct: 4   FYELGLSNELMKAIRRMGFEETTPIQAETIPLSLQNKDVIGQAQTGTGKTAAFGIPLI-- 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            EK        + L++ PTRELA QV++   K G    + V  + GG     Q + L++ 
Sbjct: 62  -EKVDVTNEAIQGLVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIGRQIRALKKR 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRI+DH NR  L + N+  +V+DEAD ML+MGFI  I+ I S VP  RQTLL
Sbjct: 121 PHIIVGTPGRIIDHINRKTLHLENVHTVVLDEADEMLNMGFIDDIEAILSNVPEKRQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + +++++E F+  P+ ++V     T   I+  ++    Q  KK  +L +LL  Q
Sbjct: 181 FSATMPEPIRRIAERFMNEPQIVKVKAKEMTVPNIQQYYLEV--QEKKKFDILTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+F   K+ V  L  +L  +G++   IHG++ Q  R+ +L  FKEG+I+++VA+
Sbjct: 239 -APELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   +I  +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHNIER 357

Query: 363 LIEKKVDWL 371
             ++K++ +
Sbjct: 358 TTKRKMERM 366


>gi|50119665|ref|YP_048832.1| ATP-dependent RNA helicase DeaD [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610191|emb|CAG73633.1| ATP-independent RNA helicase [Pectobacterium atrosepticum SCRI1043]
          Length = 637

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 146/377 (38%), Positives = 238/377 (63%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FSDLGLSAPIINALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFALPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   +  ++ P+ L+L PTRELA QVA+    + K+ + + V  L GG  ++ Q + L  
Sbjct: 68  L---KPELKAPQMLVLAPTRELAVQVAEACSDFAKHMHGVNVVALYGGQRYDVQLRALRG 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + +P T QT 
Sbjct: 125 GAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPATHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F+++P+ + + +  +T   I   +     Q  +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTV--QGMRKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++++
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLAIPEVELPNAEL 378


>gi|320540183|ref|ZP_08039838.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
 gi|320029849|gb|EFW11873.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
          Length = 623

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 146/379 (38%), Positives = 239/379 (63%), Gaps = 10/379 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 7   ISFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             L+   A ++ P+ L+L PTRELA QVA+    + K+ +++ V  L GG  ++ Q + L
Sbjct: 67  HNLQ---ADLKAPQILVLAPTRELAVQVAEAMTDFSKHMHSVNVVALYGGQRYDVQLRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   Q
Sbjct: 124 RQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+++P+ + + +  +T   I   +   +    +K   L + L
Sbjct: 184 TALFSATMPEAIRRITRRFMKDPQEVHIQSSITTRPDISQSYWTVHGM--RKNEALVRFL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +++D     IIF   K   + +  +LE+ G+S  A++G+++Q  R + L   K+G + ++
Sbjct: 242 EAED-FDAAIIFVRTKNATLEVAETLERSGYSSAALNGDMNQALREQTLERLKDGRLDIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKH 356
           +A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++
Sbjct: 301 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 360

Query: 357 IDAIEKLIEKKVDWLNGDL 375
           I+   KL   +V+  N +L
Sbjct: 361 IERTMKLTIPEVELPNAEL 379


>gi|220918247|ref|YP_002493551.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956101|gb|ACL66485.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 488

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 153/401 (38%), Positives = 235/401 (58%), Gaps = 17/401 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL LS K + A+  AG+  PTPIQ + IP  L   DV G A TGTGKTA+F+LP++  
Sbjct: 17  FADLNLSEKTLQALERAGFEHPTPIQAQAIPPALGGRDVIGAAATGTGKTAAFLLPIIER 76

Query: 63  LEKGRARVR----------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
           L  G    +           PR L+L PTRELA Q+A   +++G+  ++  AL+IGG+  
Sbjct: 77  LGGGAPAPKDRPAAAHGKPGPRALVLAPTRELAVQIAGELDRFGRGRHVRGALVIGGVGM 136

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
            AQ+  L R  +V++ TPGR++DH  +G   ++ +E+LV+DEADRMLDMGF P ++ I +
Sbjct: 137 GAQSAAL-RDHEVIVATPGRLVDHLQQGTARLDGLEVLVLDEADRMLDMGFAPQLKRILA 195

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            VP  RQTLLFSATM  E+ + +   L++P R+EV    + AE  E        +  +K 
Sbjct: 196 RVPKVRQTLLFSATMAGEVAEFARAHLRDPVRVEVARSGTLAERAEQRVF--LPEQREKL 253

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL  LL+  D   + ++F   K+    +  +L++ G  V  IH +  Q  R   L  F+
Sbjct: 254 PLLMALLEEDDL--STLVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFR 311

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +G  +++VA+D+AARG+D+ ++GHV NFD+P+  E+Y+HR+GRT R    G+A    + E
Sbjct: 312 DGQYRVLVATDIAARGIDVAEIGHVVNFDLPHVPEDYVHRVGRTARMAASGRASAFASPE 371

Query: 353 DIKHIDAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHN 391
           ++  +  IE+L    +    +  + ++    L++ D AQ N
Sbjct: 372 ELDLLRDIERLTRAPIPRAEVPREHATFQAELQRADAAQAN 412


>gi|290473453|ref|YP_003466320.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus
           bovienii SS-2004]
 gi|289172753|emb|CBJ79524.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus
           bovienii SS-2004]
          Length = 662

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 148/381 (38%), Positives = 241/381 (63%), Gaps = 10/381 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 7   ISFADLGLSAPILAALGDMGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             ++   A ++ P+ L+L PTRELA QVA+   ++ K   ++ V  L GG  ++ Q + L
Sbjct: 67  HNID---AELKAPQILVLAPTRELAVQVAEACSEFSKQMRSVNVVALYGGQRYDVQLRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  V++ TPGR+LDH  RG L ++N++ LV+DEAD ML MGFI  ++NI S +P   Q
Sbjct: 124 RQGPQVVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+ +P+ + + +  +T   I   + + +    +K   L + L
Sbjct: 184 TALFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWSVHG--VRKNEALVRFL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +++D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + ++
Sbjct: 242 ETED-FDATIIFVRTKNATLEVAETLERHGYNSAALNGDMNQALREQTLERLKDGRLDIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKH 356
           +A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   +   +++
Sbjct: 301 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 360

Query: 357 IDAIEKLIEKKVDWLNGDLSS 377
           ++   KL   +V+  N +L S
Sbjct: 361 VERTMKLTIPEVELPNAELLS 381


>gi|317046747|ref|YP_004114395.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp.
           At-9b]
 gi|316948364|gb|ADU67839.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
          Length = 640

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 145/377 (38%), Positives = 239/377 (63%), Gaps = 11/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  ++ A+ D GYVKP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLNESILSALNDMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     ++ P+ L+L PTRELA QVA+   ++ K+   + V  L GG  ++ Q + L +
Sbjct: 68  IDPN---LKAPQILVLAPTRELAVQVAEAATEFSKHMRGVNVLALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++ F+++P+ + + +  +T   I   +   +  Y +K   L + L++
Sbjct: 185 LFSATMPEAIRRITKRFMKDPQEVRIQSSVTTRPDISQSY---WTAYGRKTDALVRFLEA 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 242 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 301 TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 360

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 361 RTMKLTIPEVELPNAEL 377


>gi|325104041|ref|YP_004273695.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324972889|gb|ADY51873.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 451

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 154/369 (41%), Positives = 229/369 (62%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L   +  A+    Y  PTPIQ + IPL+LQR D+ G AQTGTGKTA+F +P+L +
Sbjct: 4   FETLNLIQPIQKALKALNYQTPTPIQAQAIPLILQRKDLLGCAQTGTGKTAAFAIPILQL 63

Query: 63  LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++   +     T   LI+ PTRELA Q+ D+F  YGKN  L  A++ GG+  ++Q   L
Sbjct: 64  LDEDLKKNHQKNTIKALIVTPTRELAIQIGDSFSDYGKNLRLKHAVIFGGVNQKSQVDAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G D+L+ TPGR+LD  ++  L + +I + V+DEADRMLDMGFI  ++ I +++P  RQ
Sbjct: 124 QKGVDILVATPGRLLDLMHQKHLSLKHINLFVLDEADRMLDMGFINDVKKIIAVLPQHRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +L FSATM   +QK+SE  L++P ++EV   SSTA+TI       +   + K  LL  +L
Sbjct: 184 SLFFSATMPPVIQKLSEEILKSPVKVEVTPVSSTADTINQTVF--FVDKNNKNDLLLHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q  + + ++F   K     +  +L KQ     AIHGN  Q +R + L +FK   I+++
Sbjct: 242 KDQ-LLDSVLVFTRTKHGADRVVKTLAKQHIKSAAIHGNKSQNARQRALDDFKTKAIRVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + +V N+++PN  E Y+HRIGR+GRAG  G A +    ++   +  
Sbjct: 301 VATDIAARGIDIDSLKYVINYEIPNIPETYVHRIGRSGRAGAEGIAISFCDVDEKPFLKD 360

Query: 360 IEKLIEKKV 368
           IEK+I K V
Sbjct: 361 IEKIIGKSV 369


>gi|311693479|gb|ADP96352.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15]
          Length = 507

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 166/462 (35%), Positives = 254/462 (54%), Gaps = 31/462 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+LGL P V+ AV   GY  P+PIQ + IP +L  + + G+AQTGTGKTA+F LP+L
Sbjct: 4   LSFAELGLDPAVLEAVSAVGYETPSPIQAQAIPALLAGNHLLGVAQTGTGKTAAFALPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           + ++   A V  P+ L+L PTRELA QVA+ F  Y   + N  V  + GG  F  Q K L
Sbjct: 64  SRID---ASVTDPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFYPQIKGL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA V++ TPGR+LDH  +G L +++++ LV+DEAD ML MGFI  ++ I +  P   Q
Sbjct: 121 RRGAQVIVGTPGRMLDHLRKGTLKLDSLKALVLDEADEMLRMGFIDDVEAILAKTPENCQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  +++KV++ +L+N   + + + + T E I    +  YA+  +K   L ++L
Sbjct: 181 RALFSATMPPQIKKVAQTYLRNATEVRIESETRTVERISQFVLPVYAE--RKLDALTRIL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +  +   IIF   K     L   L  +G +V  + G+++QR R + + + K G   ++
Sbjct: 239 EVE-PIDAAIIFVRTKAETTMLAEKLSARGHAVAPLSGDLNQRQREQTVEDLKRGKKDII 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  + HV N+DVP   E YIHR+GRTGRAGR GKA  LV          
Sbjct: 298 IATDVAARGLDVSRITHVINYDVPYDTEAYIHRVGRTGRAGREGKAILLVTP-------- 349

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
                 ++  WL     + N P+E  ++      +K      +   F+ +   ++  K  
Sbjct: 350 ------RERSWLRTLERATNSPMEAYELPSPVELKK-----MREQQFESQLLGFAEDK-- 396

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKL 461
              K ++ +S L +  + ND D     G +  +M     G L
Sbjct: 397 ---KLAKAMSLLDEIAERNDMDMAMVAGALACWMEAAQPGSL 435


>gi|311745694|ref|ZP_07719479.1| putative ATP-dependent RNA helicase [Algoriphagus sp. PR1]
 gi|126575136|gb|EAZ79486.1| putative ATP-dependent RNA helicase [Algoriphagus sp. PR1]
          Length = 453

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 154/369 (41%), Positives = 229/369 (62%), Gaps = 5/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F    L+ +++ A+ +AGY  PT IQ K IPL L  HDV GIAQTGTGKTA++VLP+L
Sbjct: 6   LGFEAFKLNRQLLEAIGEAGYAHPTAIQEKAIPLALAGHDVLGIAQTGTGKTAAYVLPIL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++   A+    R LIL PTREL  Q+ +  ++     +L V  L GG+  + Q + ++
Sbjct: 66  --MKVKYAQGLHARALILAPTRELVMQIEEVTKQLATYTDLRVVSLYGGLGPKTQIETIQ 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D++I TPGR LD + +  L    ++ +V+DEAD+M+DMGF+P I++I  ++P  RQ 
Sbjct: 124 AGVDIIISTPGRFLDIYRKNMLYTKALKTMVLDEADKMMDMGFMPQIRSILEVIPVKRQN 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    ++K++  FL+ P+R+EV   ++TAETI+            K  LL +LL+
Sbjct: 184 LLFSATFGTRIEKLAHEFLEFPERVEVTPQATTAETIDQVMYFV-PNIKTKINLLAKLLE 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGF-SVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++ +   IIF   +KN   + H LE + F  V  IH N  Q +R+  + +FK G ++++
Sbjct: 243 -EEAVNRAIIFTRSRKNAEEVFHFLENRHFGEVRVIHANKGQNTRINSMEDFKGGEVRIL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI  V HV NFD+P   E+Y+HRIGRTGRA   GKA + V   +  H + 
Sbjct: 302 VATDVASRGLDITMVSHVINFDIPLIYEDYVHRIGRTGRAEHEGKAISFVNPAEAYHFEK 361

Query: 360 IEKLIEKKV 368
           IE++I  KV
Sbjct: 362 IEEIIRMKV 370


>gi|215426565|ref|ZP_03424484.1| hypothetical protein MtubT9_09292 [Mycobacterium tuberculosis T92]
 gi|219557147|ref|ZP_03536223.1| hypothetical protein MtubT1_07530 [Mycobacterium tuberculosis T17]
 gi|260200303|ref|ZP_05767794.1| hypothetical protein MtubT4_09273 [Mycobacterium tuberculosis T46]
 gi|289442689|ref|ZP_06432433.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T46]
 gi|289569259|ref|ZP_06449486.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T17]
 gi|289749796|ref|ZP_06509174.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T92]
 gi|289415608|gb|EFD12848.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T46]
 gi|289543013|gb|EFD46661.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T17]
 gi|289690383|gb|EFD57812.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T92]
          Length = 563

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 146/361 (40%), Positives = 222/361 (61%), Gaps = 9/361 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL + P+V+ A+ D GY  PT IQ  TIP ++   DV G+AQTGTGKTA+F +PML+ 
Sbjct: 15  FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++      ++P+ L+L PTRELA QVA+ F +YG   + L V  + GG  +  Q   L R
Sbjct: 75  ID---ITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRR 131

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  R  L ++ ++ LV+DEAD ML MGF   ++ I S  P  +Q  
Sbjct: 132 GAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVA 191

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K+S  +L +P  +     ++ AE I   ++    Q ++K   L ++L+ 
Sbjct: 192 LFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYI----QVARKMDALTRVLEV 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  I+F   K+    +   L  +GFS  AI G++ Q  R + ++  ++G I ++VA
Sbjct: 248 E-PFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  ++  + AIE
Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366

Query: 362 K 362
           K
Sbjct: 367 K 367


>gi|260773326|ref|ZP_05882242.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260612465|gb|EEX37668.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 428

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 159/406 (39%), Positives = 244/406 (60%), Gaps = 11/406 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G +P++V A+ + GY K TPIQ + IP   + HD+   AQTGTGKTA+F LP++
Sbjct: 1   MSFLSQGFAPELVKALTECGYEKLTPIQQQAIPEARKGHDIFATAQTGTGKTAAFSLPVI 60

Query: 61  T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +L+ G+       R LIL PTRELAAQ+A N + Y K  +L+V  + GG    +Q ++
Sbjct: 61  QRLLDSGKKPSPHTARALILAPTRELAAQIAQNIKDYVKYTSLSVTAVYGGNKMSSQVRQ 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H + G + + N+E LV DEADR+LDMGFI  ++ I   V  + 
Sbjct: 121 LESGVDILVATPGRLEEHLSEGNVSLANLEFLVFDEADRILDMGFINPVRKIMLEVETSP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L +++ + L+ PKRI  +  ++TA T+ H  V       +K  LL +L
Sbjct: 181 QIMMFSATTSAQLNQLAGDILRKPKRINADRVNTTASTVAH--VVYPVDQERKTELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F N K+    +   L+  G      HG+  Q +R + L  FKEG  ++
Sbjct: 239 I-GRKNWQQVLVFVNYKETANQVVKELKLDGIKAVICHGDKGQSARRRALDEFKEGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+   + 
Sbjct: 298 MVATDVAARGLDIVDLPHVINYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVSREEELTLI 357

Query: 359 AIEKLIE---KKVDWLNGDLSSLNPPLEKIDIA---QHNHARKNNP 398
            +E LI+   ++V+    +    +  LEK+      +    R+NNP
Sbjct: 358 QVENLIQQRIRRVEQPGYEPKKRDAYLEKLHTKAAFKDRQGRRNNP 403


>gi|260204506|ref|ZP_05771997.1| hypothetical protein MtubK8_09388 [Mycobacterium tuberculosis K85]
 gi|289573913|ref|ZP_06454140.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis K85]
 gi|289538344|gb|EFD42922.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis K85]
          Length = 563

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 146/361 (40%), Positives = 222/361 (61%), Gaps = 9/361 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL + P+V+ A+ D GY  PT IQ  TIP ++   DV G+AQTGTGKTA+F +PML+ 
Sbjct: 15  FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++      ++P+ L+L PTRELA QVA+ F +YG   + L V  + GG  +  Q   L R
Sbjct: 75  ID---ITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRR 131

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  R  L ++ ++ LV+DEAD ML MGF   ++ I S  P  +Q  
Sbjct: 132 GAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPKYKQVA 191

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K+S  +L +P  +     ++ AE I   ++    Q ++K   L ++L+ 
Sbjct: 192 LFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYI----QVARKMDALTRVLEV 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  I+F   K+    +   L  +GFS  AI G++ Q  R + ++  ++G I ++VA
Sbjct: 248 E-PFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  ++  + AIE
Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366

Query: 362 K 362
           K
Sbjct: 367 K 367


>gi|288959250|ref|YP_003449591.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
 gi|288911558|dbj|BAI73047.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
          Length = 456

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 150/370 (40%), Positives = 227/370 (61%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL P V+ A+    Y  PTP+Q+  IP  LQ  D+   A+TGTGKTA+F+LP L
Sbjct: 1   MSFSELGLHPLVLKALEAFEYTTPTPVQLAAIPPALQGRDILATAETGTGKTAAFMLPAL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           T   E        PR L+L PTRELA QV D   KY K   L +  ++GG+P+  Q + L
Sbjct: 61  TRTAELPLNGAATPRVLVLAPTRELAKQVTDAARKYAKFMKLNIVDVVGGMPYREQLRLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R  DVL+ TPGR+LDH  R ++ ++ +E+L++DEADRMLDMGF+  ++ I    P TRQ
Sbjct: 121 SRPVDVLVATPGRLLDHVARRRIALDEVEVLILDEADRMLDMGFLDDVETIAKCCPPTRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLF+AT+   + +++ N L+NP+R+ V + +++    +    A    + ++   L Q  
Sbjct: 181 TLLFTATLDRRMAQLAGNLLRNPERVAVESQATSVNVEQRLHHADDMDHKRR---LLQHF 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q+ +   IIF   K++   L   L   G +  A+HG++DQ  R + L   + G ++L+
Sbjct: 238 AAQEEVGKAIIFAATKRDADTLAEELSAAGHAAAALHGDMDQTKRNRTLQRLRTGQVRLL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ D+ HV NFD+P  AE+Y+HRIGRTGRAG  G A +  A+ D + +  
Sbjct: 298 VATDVAARGIDVRDITHVINFDLPRSAEDYVHRIGRTGRAGASGVAISFAARADRETLVR 357

Query: 360 IEKLIEKKVD 369
           IE+  +  ++
Sbjct: 358 IERYTKATLE 367


>gi|238784236|ref|ZP_04628248.1| ATP-dependent RNA helicase rhlE [Yersinia bercovieri ATCC 43970]
 gi|238714803|gb|EEQ06803.1| ATP-dependent RNA helicase rhlE [Yersinia bercovieri ATCC 43970]
          Length = 451

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 164/400 (41%), Positives = 245/400 (61%), Gaps = 12/400 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY+ PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L       KGR   R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    
Sbjct: 61  QLLNQNQEPIKGR---RPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I       +   ++K  L
Sbjct: 178 PAKRQNLLFSATFSDEIKGLASKLLHNPVSVEVARRNTASEQITQSV--HFVDKNRKREL 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L Q++  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G
Sbjct: 236 LSQMI-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ 
Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 354

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           K +  IE+L+++++  +  D    +P ++   I      R
Sbjct: 355 KLLRDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGR 394


>gi|188587881|ref|YP_001922673.1| putative ATP-dependent RNA helicase RhlE [Clostridium botulinum E3
           str. Alaska E43]
 gi|188498162|gb|ACD51298.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 432

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 164/421 (38%), Positives = 250/421 (59%), Gaps = 15/421 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL +   +  A+ +AGY  PTPIQ ++IP +L+  D  G AQTGTGKTA+F +P+L
Sbjct: 1   MLFKDLNIIEPIQKALTEAGYTNPTPIQEQSIPSLLEGKDFLGCAQTGTGKTAAFAIPVL 60

Query: 61  TILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             + K + +    RT   LIL PTRELA Q+ +NF  Y K+ N+   ++ GG+  + Q +
Sbjct: 61  QNIAKNQNKSDKSRTIKALILAPTRELAIQIEENFTLYSKHTNIKNTVIFGGVSQKPQTR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+LI TPGR+LD  ++  + ++N++  V+DEADRM DMG +  ++ I + +P  
Sbjct: 121 ILGEGVDILIATPGRLLDLIDQKYIDLSNVKHFVLDEADRMFDMGMVRDVKKIVAKLPKV 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  E++ +  + L++P ++EV   SST +TI       +     K +LL  
Sbjct: 181 RQNLLFSATMPSEVKSLVNSILKDPVKVEVAPVSSTIDTITQGVY--FVTKKDKKSLLVH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ + ++K+ ++F   K    N+   L K G    AIHGN  Q +R   LSNFKEG I+
Sbjct: 239 LLKDE-SIKSLLVFSRTKYGANNIVKDLAKTGTESQAIHGNKSQNARQLALSNFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+  + HV N+D+P+  E Y+HRIGRTGRAG  G A +    ++   +
Sbjct: 298 VLVATDIAARGIDVDGLSHVINYDLPDVPETYVHRIGRTGRAGNSGVAISFCDVDEKSSL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-KKNYSSQ 416
             IEK I K +  +       N   E+I I +    RK     +K+T  +++ K+N+  +
Sbjct: 358 KDIEKTIGKNIPVMK------NVEFERIAITREPAQRKE--ADKKTTDANKKPKRNWYGE 409

Query: 417 K 417
           K
Sbjct: 410 K 410


>gi|294497056|ref|YP_003560756.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
 gi|294346993|gb|ADE67322.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
          Length = 503

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 156/369 (42%), Positives = 229/369 (62%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS ++  AV   G+ + TPIQ +TIPL L+ HD+ G AQTGTGKTA+F +P++  
Sbjct: 4   FQDLGLSQQLNKAVSKMGFEEATPIQSETIPLALEGHDLIGQAQTGTGKTAAFGIPLI-- 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            EK    V   + LI+ PTRELA QV++   K G+   + V  + GG     Q + L++ 
Sbjct: 62  -EKVDVNVDAIQGLIIAPTRELAVQVSEELYKIGQTKRVRVLSIYGGQDISRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH NR  L + ++  +++DEAD ML+MGFI  I+ I S VP   QTLL
Sbjct: 121 PHIIVGTPGRMLDHINRRTLRLQDVHTVILDEADEMLNMGFIEDIEKILSNVPENHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +++++E F+  PK ++V     T   I   ++    Q  +K  +L +LL  Q
Sbjct: 181 FSATMPTPIRRIAEKFMNEPKVVKVKAKEVTMPNITQYYLE--VQEKRKFDILTRLLDMQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  IIF   K+ V  L  +L  +G+S   IHG++ Q  R+ +L  FKEG+I ++VA+
Sbjct: 239 -SPELAIIFGRTKRRVDELSEALNMRGYSAQGIHGDLTQSKRLSVLRQFKEGSIDVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   +   +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGAAMTFVTPRETGQLHNIER 357

Query: 363 LIEKKVDWL 371
             ++K++ L
Sbjct: 358 TTKRKMERL 366


>gi|257091933|ref|YP_003165574.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044457|gb|ACV33645.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 474

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 152/394 (38%), Positives = 242/394 (61%), Gaps = 30/394 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+FA++GL P ++ A+ D+GY +PTP+Q + IP  ++  D+   +QTG+GKTA+F+LP L
Sbjct: 1   MNFAEIGLHPAILKALTDSGYSEPTPVQQQAIPPAIEGRDLMVSSQTGSGKTAAFMLPAL 60

Query: 61  TIL-------------EKGRARVR----------MPRTLILEPTRELAAQVADNFEKYGK 97
                           E+G AR R           PR L+L PTRELA QV    EKYG+
Sbjct: 61  HRFALQERPAAVPRPSERGAARPRGHDRQRFQAAQPRMLVLTPTRELALQVTAATEKYGR 120

Query: 98  N-YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEAD 156
             +++    ++GG+P+  Q + L R  ++L+ TPGR++DH + GK+  + ++ILV+DEAD
Sbjct: 121 QLHHVRAVAILGGMPYPKQMELLGRNPEILVATPGRLIDHMSSGKIDFSQLQILVLDEAD 180

Query: 157 RMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
           RMLDMGFI  I+ I +  P +RQTLLFSAT+   + ++++   +   RI+V+  S+  + 
Sbjct: 181 RMLDMGFIEDIERIVAATPGSRQTLLFSATLDGTVGELAQRMTRAALRIQVDATSARHDN 240

Query: 217 IEH--CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           IE    FV   A    K  LL  LL+   T+   ++F   K++   +   L   G +  A
Sbjct: 241 IEQRMHFVDDLAH---KNRLLDHLLRDA-TIDQALVFTATKRDADTVSDRLNVAGLNAAA 296

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + L+  + G ++++VA+D+AARG+D+P + HVFN+D+P  AE+Y+HRIG
Sbjct: 297 LHGDMHQGARNRTLAAMRRGQVRILVATDVAARGIDVPTITHVFNYDLPKFAEDYVHRIG 356

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           RTGRAGR+G A +LV   +  ++  IE+  ++ +
Sbjct: 357 RTGRAGRNGLAISLVHHAEHFNVRKIERFTKQPI 390


>gi|317124106|ref|YP_004098218.1| ATP-dependent RNA helicase CsdA [Intrasporangium calvum DSM 43043]
 gi|315588194|gb|ADU47491.1| ATP-dependent RNA helicase CsdA [Intrasporangium calvum DSM 43043]
          Length = 605

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 152/380 (40%), Positives = 224/380 (58%), Gaps = 14/380 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL  +++ A  D GY  P+PIQ  TIP +L+  DV G+AQTGTGKTA+F LP+L  
Sbjct: 28  FADLGLDERILKATRDLGYEHPSPIQAATIPAMLEGRDVVGLAQTGTGKTAAFALPILAR 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+    + + P+ L+L PTRELA QV + FE+Y  N   + V  + GG  +  Q   L R
Sbjct: 88  LD---LKQKTPQALVLAPTRELALQVCEAFERYAANLRGVHVLPVYGGQGYGVQLSALRR 144

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGRI+DH  +G L ++ +  LV+DEAD ML MGF   ++ I +  P  +Q  
Sbjct: 145 GVHVVVGTPGRIMDHLEKGTLDLSELRFLVLDEADEMLKMGFAEDVETILADTPADKQVA 204

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  +++++S+  L +P  I V   ++TA  I   ++     Y +K   L ++L+ 
Sbjct: 205 LFSATMPAQIRRISKQHLTDPVEITVKAKTTTAPNITQRYL--IVSYPQKVDALTRILEV 262

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++  +  I+F   K     L   L  +GFS  AI+G+I Q  R + +   + G + ++VA
Sbjct: 263 EN-FEGMIVFVRTKNETETLAEKLRARGFSAAAINGDIVQAQRERTVDQLRSGKLDILVA 321

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV NFD+P   E+Y+HRIGRTGRAGR G A + V   +   + AIE
Sbjct: 322 TDVAARGLDVERISHVVNFDIPTDTESYVHRIGRTGRAGRSGDAISFVTPRERHLLKAIE 381

Query: 362 KLIEKKVDWLNGDLSSLNPP 381
           K   +        L+ + PP
Sbjct: 382 KATRQG-------LTEMRPP 394


>gi|313123075|ref|YP_004033334.1| dead box ATP-dependent RNA helicase srmb [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312279638|gb|ADQ60357.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 481

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 150/385 (38%), Positives = 236/385 (61%), Gaps = 15/385 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+  ++ A+  +G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFTELGLNDNILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  +    + + +++EPTRELA Q  +   + G++ N  V ++ GG     Q + L+
Sbjct: 61  QKLDLDKQEQAI-QAIVIEPTRELAIQTQEELFRLGRDENAKVQVVYGGADIGRQIRALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  ++L+ TPGR+LDH  R  + ++ ++ +V+DEAD MLDMGFI  I++I +      QT
Sbjct: 120 KAPEILVGTPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQQL 238
           LLFSATM   +Q + E F+ +P+ +++     TA+ I+  FV      ++   C L+   
Sbjct: 180 LLFSATMPKPIQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLID-- 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +++ D     ++F   K+ V  L   L  +G++   IHG++ Q  RM++L  FKEG + +
Sbjct: 238 VENPDL---AVVFGRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDI 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG+ G + T V   +I ++ 
Sbjct: 295 LVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGMSVTFVTPNEIGYMR 354

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLE 383
            IE LI+KK       +S L PP +
Sbjct: 355 TIEDLIKKK-------MSPLRPPTD 372


>gi|167622568|ref|YP_001672862.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167352590|gb|ABZ75203.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 625

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 149/367 (40%), Positives = 229/367 (62%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL+  +V A+ D GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L  
Sbjct: 8   FRELGLNESLVRALDDLGYEKPTPIQAASIEPLMANKDILGQAQTGTGKTGAFALPLLNS 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++        P+ L+L PTRELA QVA+ F  Y K    L V  + GG   + Q   L R
Sbjct: 68  IDPN---TNAPQILVLAPTRELAVQVAEAFASYAKYMKGLHVLPIYGGQSMQQQLNALRR 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH  RG L ++ ++ +V+DEAD ML MGFI  I+ I    P TRQ  
Sbjct: 125 GPQIIVGTPGRVMDHMRRGTLKLDTLKAMVLDEADEMLKMGFIDDIEWILEHTPKTRQLA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +++++V+  +L NP  +++   +ST ETIE  FV   +Q++K  AL++ +L+ 
Sbjct: 185 LFSATMPEQIKRVANKYLDNPVHVKIAATTSTVETIEQRFVQV-SQHNKLEALVR-VLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T +  IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++A
Sbjct: 243 EKT-EGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAIDQLKRGQLDIIIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +GHV N+D+P   E Y+HRIGRTGRAGR G A   V   +++ +  IE
Sbjct: 302 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIE 361

Query: 362 KLIEKKV 368
           +    ++
Sbjct: 362 RATNSRI 368


>gi|56708046|ref|YP_169942.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670517|ref|YP_667074.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457133|ref|ZP_03665606.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370532|ref|ZP_04986537.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874848|ref|ZP_05247558.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|54113663|gb|AAV29465.1| NT02FT0547 [synthetic construct]
 gi|56604538|emb|CAG45585.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320850|emb|CAL08968.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568775|gb|EDN34429.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840847|gb|EET19283.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159241|gb|ADA78632.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 441

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 150/365 (41%), Positives = 234/365 (64%), Gaps = 4/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+  +  A+   GY KPTPIQ + IP+VL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MKFSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  +  +++   V+DEADRMLDMGFI  ++ I +L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++  FL NP+ +  +  ++T + I    + T  + +K  AL+  L+
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQK-IYTLDKSNKINALI-SLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+ +   ++F   K     +   L   G S  AIHGN  Q +R K L++FK   I ++
Sbjct: 239 KDQN-LHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKYNDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+ N AE+Y+HRIGRTGR+G+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRSGQEGLAISLVSADEVESLSN 357

Query: 360 IEKLI 364
           IE LI
Sbjct: 358 IEHLI 362


>gi|311112058|ref|YP_003983280.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
 gi|310943552|gb|ADP39846.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
          Length = 695

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 152/375 (40%), Positives = 231/375 (61%), Gaps = 9/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL P+V+ A+ + GY KP+PIQ +TIPL+L   DV G+AQTGTGKTA+F LP L+ 
Sbjct: 106 FTDLGLDPRVLSALEEVGYEKPSPIQEQTIPLLLDGKDVVGLAQTGTGKTAAFALPALSR 165

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
              L       R  + L+L PTRELA QVA+ F  Y  +  + TV  + GG P+  Q   
Sbjct: 166 MAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAG 225

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RGA V++ TPGR++DH  +G L ++N++ LV+DEAD ML MGF   ++ I    P  +
Sbjct: 226 LRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVETILEGTPDAK 285

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q  LFSATM + ++K+++ +L +P  + V T ++T   I   ++     +S K   + ++
Sbjct: 286 QVALFSATMPNSIRKIAQQYLNDPTEVRVKTKTTTGANIRQRYMQVM--HSHKLDAMTRV 343

Query: 239 LQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ ++   +GII F   KK    +   L+ +GF   AI+G+I Q+ R + +   ++G I 
Sbjct: 344 LEVENY--DGIIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRID 401

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  +  V N+D+P+  E+Y+HRIGRTGRAGR G+A   V   +   +
Sbjct: 402 ILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRDGEAILFVTPREKYML 461

Query: 358 DAIEKLIEKKVDWLN 372
             IEK   +KV+ ++
Sbjct: 462 RQIEKATRQKVEPMH 476


>gi|325964224|ref|YP_004242130.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470311|gb|ADX73996.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 710

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 150/375 (40%), Positives = 230/375 (61%), Gaps = 9/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+  +V+ A+ D GY KP+PIQ  TIPL+L+  DV G+AQTGTGKTA+F +P L+ 
Sbjct: 69  FADLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSR 128

Query: 63  LEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
           L +        R  + L+L PTRELA QVA+ F  Y K+ +  TV  + GG  +  Q   
Sbjct: 129 LAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAG 188

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RGA V++ TPGR++DH ++G L ++ ++ LV+DEAD ML MGF   ++ I    P  R
Sbjct: 189 LRRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQTPSDR 248

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q  LFSATM  +++++S+ +L NP  I V + ++T       ++     +  K   + ++
Sbjct: 249 QVALFSATMPSQIRRMSKQYLNNPAEISVKSKTTTGANTRQRYLQVMGPH--KLDAMTRI 306

Query: 239 LQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ ++   +G+I F   K    +L   L+ +GF   AI+G+I Q+ R + +   KEG I 
Sbjct: 307 LEVEEF--DGVIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRID 364

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   +   +   +
Sbjct: 365 ILVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLL 424

Query: 358 DAIEKLIEKKVDWLN 372
            +IEK   + V+ ++
Sbjct: 425 RSIEKATRQPVEQMH 439


>gi|31792446|ref|NP_854939.1| cold-shock DEAD-box protein A [Mycobacterium bovis AF2122/97]
 gi|121637182|ref|YP_977405.1| putative cold-shock dead-box protein a homolog deaD [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|215430135|ref|ZP_03428054.1| hypothetical protein MtubE_05528 [Mycobacterium tuberculosis
           EAS054]
 gi|224989657|ref|YP_002644344.1| putative cold-shock dead-box protein a homolog [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|260186187|ref|ZP_05763661.1| hypothetical protein MtubCP_09173 [Mycobacterium tuberculosis
           CPHL_A]
 gi|289446844|ref|ZP_06436588.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           CPHL_A]
 gi|289753325|ref|ZP_06512703.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis EAS054]
 gi|31618035|emb|CAD94146.1| PROBABLE COLD-SHOCK DEAD-BOX PROTEIN A HOMOLOG DEAD (ATP-dependent
           RNA helicase deaD homolog) [Mycobacterium bovis
           AF2122/97]
 gi|121492829|emb|CAL71300.1| Probable cold-shock dead-box protein a homolog deaD [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|224772770|dbj|BAH25576.1| putative cold-shock dead-box protein a homolog [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|289419802|gb|EFD17003.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           CPHL_A]
 gi|289693912|gb|EFD61341.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis EAS054]
          Length = 563

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 146/361 (40%), Positives = 222/361 (61%), Gaps = 9/361 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL + P+V+ A+ D GY  PT IQ  TIP ++   DV G+AQTGTGKTA+F +PML+ 
Sbjct: 15  FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++      ++P+ L+L PTRELA QVA+ F +YG   + L V  + GG  +  Q   L R
Sbjct: 75  ID---ITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRR 131

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  R  L ++ ++ LV+DEAD ML MGF   ++ I S  P  +Q  
Sbjct: 132 GAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVA 191

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K+S  +L +P  +     ++ AE I   ++    Q ++K   L ++L+ 
Sbjct: 192 LFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYI----QVARKMDALTRVLEV 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  I+F   K+    +   L  +GFS  AI G++ Q  R + ++  ++G I ++VA
Sbjct: 248 E-PFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  ++  + AIE
Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366

Query: 362 K 362
           K
Sbjct: 367 K 367


>gi|89256685|ref|YP_514047.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315095|ref|YP_763818.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502845|ref|YP_001428910.1| DEAD/DEAH box helicase domain-containing protein [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167010493|ref|ZP_02275424.1| hypothetical protein Ftulh_07207 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367994|ref|ZP_04984014.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
           holarctica 257]
 gi|290954278|ref|ZP_06558899.1| DEAD/DEAH box helicase domain-containing protein [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295312305|ref|ZP_06803094.1| DEAD/DEAH box helicase domain-containing protein [Francisella
           tularensis subsp. holarctica URFT1]
 gi|89144516|emb|CAJ79831.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129994|gb|ABI83181.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253804|gb|EBA52898.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
           holarctica 257]
 gi|156253448|gb|ABU61954.1| DEAD/DEAH box helicase domain protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 569

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 148/363 (40%), Positives = 228/363 (62%), Gaps = 5/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGL+  +V  V+  GY  PTPIQ   IP +L   DV G AQTGTGKTA+F LP++ 
Sbjct: 8   DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++   +R R P+ L+L PTRELA QVA+ FE + KN  NL VA + GG  + +Q + L+
Sbjct: 68  NMDLA-SRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ T GR++DH  +G L ++N+  LV+DEAD ML MGFI  +Q + S V    Q 
Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVQFVLSHVSEQCQR 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++  + E +L+NP +I+V   + TA T+   F+       +K   L +LL+
Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKG--FRKIDALDRLLE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++T    IIF   K + + +  +L+  G+ V AI+G++ Q  R  I+  F+     ++V
Sbjct: 245 TEET-DGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+  + HV N+D+PN  + Y+HRIGRTGRAGR G + +LV  ++++ +  +
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363

Query: 361 EKL 363
           E+ 
Sbjct: 364 ERF 366


>gi|304410127|ref|ZP_07391746.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307302161|ref|ZP_07581919.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304351536|gb|EFM15935.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306914199|gb|EFN44620.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 433

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 154/370 (41%), Positives = 231/370 (62%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     SP+++ A+ D GY + TPIQ + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  T-ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             ++E     ++   R LIL PTRELAAQVADN   Y K  N +V  + GG+  E Q +K
Sbjct: 61  QKMVENPSETLKSNARVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RGADV++ TPGR+L+H     L ++N++ LV+DEADRMLDMGF   IQ I   V   R
Sbjct: 121 LKRGADVIVATPGRLLEHLTACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  ++K++ + +  P+ I V+  ++TA+T+    V    +  +K  LL +L
Sbjct: 181 QNLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQ--VVYPVEQRRKRELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  ++  +  ++F   +     L   L   G     +HG+  Q SR + L  F  G +++
Sbjct: 239 IGKKN-WQQVLVFTATRDAADTLVKELNLDGIPSEVVHGDKGQGSRRRALREFVAGDVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDIP + +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLA 357

Query: 359 AIEKLIEKKV 368
            IEKLI +++
Sbjct: 358 DIEKLIGQQI 367


>gi|156502690|ref|YP_001428756.1| DEAD/DEAH box helicase family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|290953085|ref|ZP_06557706.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313716|ref|ZP_06804297.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           holarctica URFT1]
 gi|156253293|gb|ABU61799.1| DEAD/DEAH box helicase family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 441

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 158/398 (39%), Positives = 249/398 (62%), Gaps = 8/398 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+  +  A+   GY KPTPIQ + IP+VL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MKFSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSNNPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  +  +++   V+DEADRMLDMGFI  ++ I +L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++  FL NP+ +  +  ++T + I    + T  + +K  AL+  L+
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQK-IYTLDKSNKINALI-SLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+ +   ++F   K     +   L   G S  AIHGN  Q +R K L++FK   I ++
Sbjct: 239 KDQN-LHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+ N AE+Y+HRIGRTGRAG+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARK 395
           IE LI   +  + L G  ++ N P+    ++  N A+K
Sbjct: 358 IEHLIGHLLPREELEGFEATHNVPIT--SMSHKNKAKK 393


>gi|308189119|ref|YP_003933250.1| Cold-shock DEAD box protein A [Pantoea vagans C9-1]
 gi|308059629|gb|ADO11801.1| Cold-shock DEAD box protein A [Pantoea vagans C9-1]
          Length = 640

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 146/377 (38%), Positives = 238/377 (63%), Gaps = 11/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  ++ ++   GYVKP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     V+ P+ L+L PTRELA QVA+   ++ K+   L V  L GG  ++ Q + L +
Sbjct: 68  IDP---TVKAPQILVLAPTRELAVQVAEAITEFSKHMRGLNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQVVVGTPGRLLDHLKRGTLELSNLRGLVLDEADEMLRMGFIEDVETIMAQIPAGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++ F+++P+ + + +  +T   I   +   +  Y +K   L + L++
Sbjct: 185 LFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSY---WTAYGRKTDALVRFLEA 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 242 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 301 TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 360

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 361 RTMKLTIPEVELPNAEL 377


>gi|15598036|ref|NP_251530.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|116050844|ref|YP_790333.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218890962|ref|YP_002439828.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
 gi|254235828|ref|ZP_04929151.1| hypothetical protein PACG_01770 [Pseudomonas aeruginosa C3719]
 gi|254241507|ref|ZP_04934829.1| hypothetical protein PA2G_02205 [Pseudomonas aeruginosa 2192]
 gi|9948926|gb|AAG06228.1|AE004710_10 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|115586065|gb|ABJ12080.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126167759|gb|EAZ53270.1| hypothetical protein PACG_01770 [Pseudomonas aeruginosa C3719]
 gi|126194885|gb|EAZ58948.1| hypothetical protein PA2G_02205 [Pseudomonas aeruginosa 2192]
 gi|218771187|emb|CAW26952.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
          Length = 567

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 149/369 (40%), Positives = 236/369 (63%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+ P V+ A++  GY +P+PIQ ++IPL+L+ HD+ G AQTGTGKTA+F LP+L+ 
Sbjct: 19  FAALGIHPNVLAAIVAVGYEEPSPIQAQSIPLILEGHDMIGQAQTGTGKTAAFALPLLSR 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  R   R P+ L+L PTRELA QVA   E Y K    + V  + GG P   Q K L +
Sbjct: 79  IDPSR---REPQMLVLVPTRELALQVATACETYSKQLPGVGVVAVYGGAPMGPQLKALRQ 135

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGR+ DH  R + L+  ++ LV+DEAD ML +GF+  ++ I   +P +RQT+
Sbjct: 136 GAQILVATPGRLCDHLRRDEKLLATVQRLVLDEADEMLKLGFMDDLEVIFEALPESRQTV 195

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L+ PK +++   + T   IE   +  +A   +K   +Q+LL+ 
Sbjct: 196 LFSATLPASIRGIAERHLKQPKHVKIAAKTQTVARIEQVHLMVHA--DQKAGSIQRLLEV 253

Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D +   I F   K+  ++    LE+QG+   A++G++ Q  R +++ + K+G++ ++
Sbjct: 254 EQFDAL---IAFVRTKQATLDYAELLERQGYRAAALNGDMPQAQRERVIESLKDGSLDIV 310

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+P + HV N D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  
Sbjct: 311 IATDVAARGLDVPRITHVLNIDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 370

Query: 360 IEKLIEKKV 368
           IE++  +KV
Sbjct: 371 IERVTGQKV 379


>gi|126175289|ref|YP_001051438.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|153001611|ref|YP_001367292.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|160876347|ref|YP_001555663.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|217972460|ref|YP_002357211.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|125998494|gb|ABN62569.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
 gi|151366229|gb|ABS09229.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|160861869|gb|ABX50403.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|217497595|gb|ACK45788.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
 gi|315268537|gb|ADT95390.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 433

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 154/370 (41%), Positives = 231/370 (62%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     SP+++ A+ D GY + TPIQ + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  T-ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             ++E     ++   R LIL PTRELAAQVADN   Y K  N +V  + GG+  E Q +K
Sbjct: 61  QKMVENPSETLKSNARVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RGADV++ TPGR+L+H     L ++N++ LV+DEADRMLDMGF   IQ I   V   R
Sbjct: 121 LKRGADVIVATPGRLLEHLTACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  ++K++ + +  P+ I V+  ++TA+T+    V    +  +K  LL +L
Sbjct: 181 QNLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQ--VVYPVEQRRKRELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  ++  +  ++F   +     L   L   G     +HG+  Q SR + L  F  G +++
Sbjct: 239 IGKKN-WQQVLVFTATRDAADTLVKELNLDGIPSEVVHGDKGQGSRRRALREFVAGDVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDIP + +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLA 357

Query: 359 AIEKLIEKKV 368
            IEKLI +++
Sbjct: 358 DIEKLIGQQI 367


>gi|327479422|gb|AEA82732.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 4166]
          Length = 441

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 155/366 (42%), Positives = 225/366 (61%), Gaps = 5/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  +    Y KPTP+Q + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIDPLLRTLETLDYRKPTPVQAEAIPAVLKGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L    A+V     R L+L PTRELA QV ++F  YG+N  L    + GG+    Q   
Sbjct: 61  QRLTMEGAKVASNSVRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD + +  +    ++ LV+DEADRMLD+GF   +  + S +P  R
Sbjct: 121 LRKGIDVLVATPGRLLDLYRQNAVGFAQLQALVLDEADRMLDLGFAEELDALFSALPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT ++ +++++   L++P  +EV+  ++ A+T++   V       +K  L   L
Sbjct: 181 QTLLFSATFSEPIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPV--DKKRKSELFLHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L ++      ++F   +K V  L   L+ QG +  AIHG+  Q SR++ L  FK G +Q+
Sbjct: 239 L-AERRWGQVLVFVKTRKGVDQLVDELQAQGIASDAIHGDKPQASRLRALERFKAGEVQV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V NFD+P  AE+Y+HRIGRTGRAG  G+A +LVA +++  + 
Sbjct: 298 LVATDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGASGEAISLVAADEVDQLA 357

Query: 359 AIEKLI 364
           AIE LI
Sbjct: 358 AIETLI 363


>gi|134301686|ref|YP_001121654.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049463|gb|ABO46534.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 569

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 147/363 (40%), Positives = 228/363 (62%), Gaps = 5/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGL+  +V  V+  GY  PTPIQ   IP +L   DV G AQTGTGKTA+F LP++ 
Sbjct: 8   DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++   +R R P+ L+L PTRELA QVA+ FE + KN  NL VA + GG  + +Q + L+
Sbjct: 68  NMDLA-SRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ T GR++DH  +G L ++N+  LV+DEAD ML MGFI  ++ + S V    Q 
Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQSQR 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++  + E +L+NP +I+V   + TA T+   F+       +K   L +LL+
Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKG--FRKIDALDRLLE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++T    IIF   K + + +  +L+  G+ V AI+G++ Q  R  I+  F+     ++V
Sbjct: 245 TEET-DGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+  + HV N+D+PN  + Y+HRIGRTGRAGR G + +LV  ++++ +  +
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363

Query: 361 EKL 363
           E+ 
Sbjct: 364 ERF 366


>gi|187934290|ref|YP_001887690.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722443|gb|ACD23664.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B str.
           Eklund 17B]
          Length = 432

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 164/421 (38%), Positives = 249/421 (59%), Gaps = 15/421 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL +   +  A+ +AGY  PTPIQ ++IP +L   D  G AQTGTGKTA+F +P+L
Sbjct: 1   MLFKDLNIIEPIQRALTEAGYTNPTPIQEQSIPSLLNGKDFLGCAQTGTGKTAAFAIPVL 60

Query: 61  TILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             + + + +   PRT   LIL PTRELA Q+ +NF  Y K+ N+   ++ GG+  + Q +
Sbjct: 61  QNIAQNQKKSDKPRTIKALILAPTRELAIQIEENFTLYSKHTNIKNTVIFGGVSQKPQTR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+LI TPGR+LD  ++  + ++N++  V+DEADRM DMG +  ++ I + +P  
Sbjct: 121 ILGEGVDILIATPGRLLDLIDQKYIDLSNVKHFVLDEADRMFDMGMVRDVKKIVAKLPKV 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  E++ +  + L++P ++EV   SST +TI       +     K +LL  
Sbjct: 181 RQNLLFSATMPSEVKSLVNSILKDPVKVEVAPVSSTIDTITQGVY--FVTKKDKKSLLVH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ + ++K+ ++F   K    N+   L K G    AIHGN  Q +R   LSNFKEG I+
Sbjct: 239 LLKDE-SIKSLLVFSRTKYGANNIVKDLAKTGTESQAIHGNKSQNARQLALSNFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+  + HV N+D+P+  E Y+HRIGRTGRAG  G A +    ++   +
Sbjct: 298 VLVATDIAARGIDVDGLSHVINYDLPDVPETYVHRIGRTGRAGNSGVAISFCDVDEKSAL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-KKNYSSQ 416
             IEK I K +  +       N   E+I I +    RK     +K+T  +++ K+N+   
Sbjct: 358 KDIEKTIGKNIPVMK------NVEFERIAITREPAQRKE--ADKKTTDANKKPKRNWYGD 409

Query: 417 K 417
           K
Sbjct: 410 K 410


>gi|27904825|ref|NP_777951.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|31340034|sp|Q89AF9|DEAD_BUCBP RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|27904223|gb|AAO27056.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 602

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 146/373 (39%), Positives = 232/373 (62%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  GL+  ++ A+ D GYV+P+PIQ   IP +++  DV G+AQTG+GKTA+F LP+L
Sbjct: 6   MTFSSFGLNSCIITALNDIGYVQPSPIQAACIPYLIKGKDVLGMAQTGSGKTAAFALPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             +   +  VR+P+ L+L PTRELA QVA+ F  + K    + V  L GG  ++ Q K L
Sbjct: 66  HNI---KLDVRVPQILVLTPTRELAVQVAEAFSNFSKKLIGVHVLALYGGQRYDLQLKSL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  +++ TPGR+LDH  R  L ++N+  LV+DEAD ML MGFI  ++ I + +P   Q
Sbjct: 123 RKGPQIIVGTPGRLLDHLKRRTLSLSNLHSLVLDEADEMLRMGFIEDVETIMTEIPDRHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++S  F++NPK I + +  +T   I+  +   +  Y KK   L + L
Sbjct: 183 TALFSATMPEAIRRISRRFMKNPKEIRIQSNITTRPDIQQSY---WMVYGKKTDALIRFL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +++D     IIF   K   + +   LE+ G++  A++G+++Q  R + L   K+G + ++
Sbjct: 240 EAED-FSATIIFVRTKNATLEVSEVLERYGYNSAALNGDMNQSLREQTLEKLKDGRLDIL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR GKA   V   + + +  
Sbjct: 299 IATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRKGKALLFVENRERRLLRN 358

Query: 360 IEKLIEKKVDWLN 372
           IE+ +   +  +N
Sbjct: 359 IERAMNISISEVN 371


>gi|238798926|ref|ZP_04642391.1| ATP-dependent RNA helicase rhlE [Yersinia mollaretii ATCC 43969]
 gi|238717236|gb|EEQ09087.1| ATP-dependent RNA helicase rhlE [Yersinia mollaretii ATCC 43969]
          Length = 451

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 160/374 (42%), Positives = 237/374 (63%), Gaps = 12/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY+ PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L       KGR   R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    
Sbjct: 61  QLLNQNQEPIKGR---RPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I       +   ++K  L
Sbjct: 178 PAKRQNLLFSATFSDEIKGLASKLLHNPVSVEVARRNTASEQITQSV--HFVDKNRKREL 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L Q++  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G
Sbjct: 236 LSQMI-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ 
Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 354

Query: 355 KHIDAIEKLIEKKV 368
           K +  IE+L+++++
Sbjct: 355 KLLRDIERLLKREI 368


>gi|226313946|ref|YP_002773842.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226096896|dbj|BAH45338.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 493

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 146/348 (41%), Positives = 217/348 (62%), Gaps = 6/348 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G  P+++  + D  Y +PT IQ + IPL+++  D+ G AQTGTGKTA+F+LP+L  
Sbjct: 5   FASFGFRPELMQGIQDLYYKEPTQIQEEAIPLIMEGKDLIGQAQTGTGKTAAFMLPILNA 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++G+   R  + LIL PTREL+ Q+A   EK GK+ N+ V  L GG   + Q  KL+  
Sbjct: 65  LDEGK---RDIQALILTPTRELSIQIAKEVEKLGKHLNVNVLSLHGGTDIDKQLSKLKET 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  RG L    I  LV+DEAD+M++MGF+  ++ +    P  RQ LL
Sbjct: 122 VQIVVGTPGRVLDHMKRGSLHFGRISTLVLDEADKMMEMGFLEDVEQVIVHTPSQRQVLL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D ++K++  F++ P  I++     T E IE  F     Q  K  AL+  L Q Q
Sbjct: 182 FSATMPDLVKKLAHRFMKQPPHIKIEGKQKTVERIEQ-FYYVVNQSDKTDALVDVLEQEQ 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F N +  V  L   L++ G S  A++G++ Q  R +++  F+E   Q ++A+
Sbjct: 241 PFLT--IVFANTQVRVQQLTARLQENGLSAKALYGDLSQNKREQLMKQFREIRFQFLIAT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           D+AARGLD+  V HV N+D+PN  ++YIHR+GRTGRAG+ GKA +L++
Sbjct: 299 DIAARGLDVEGVTHVINYDLPNDVDSYIHRVGRTGRAGQKGKAISLIS 346


>gi|261855960|ref|YP_003263243.1| DEAD/DEAH box helicase [Halothiobacillus neapolitanus c2]
 gi|261836429|gb|ACX96196.1| DEAD/DEAH box helicase domain protein [Halothiobacillus
           neapolitanus c2]
          Length = 469

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 174/427 (40%), Positives = 250/427 (58%), Gaps = 15/427 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+LGL P+++ A+   GY  PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFAELGLMPELLTALDAVGYTSPTPIQREAIPIVLSGRDLLAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L         P    R L+L PTRELA+QV ++ ++YG+   LT  ++ GG+    Q 
Sbjct: 61  QRLATTPVLHPAPKHRIRALVLTPTRELASQVEESVKQYGQKLKLTSMVIFGGVNINPQR 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L+R  D+L+ TPGR+LDH  +G + +  +EILV+DEADRMLDMGFI  I+ + +L+P 
Sbjct: 121 DRLQRKLDILVATPGRLLDHVGQGNVDLGGVEILVLDEADRMLDMGFIRDIKRVLALLPK 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT   E++  ++N L NP ++EV    +TAE +E            K ALLQ
Sbjct: 181 QRQNLLFSATFAPEIKTFAQNLLDNPAKVEVAPQVTTAERVEQRIYPV--DRDAKKALLQ 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           QL+         ++F   K     L   L+K G    AIH N  Q +R K L  FK G +
Sbjct: 239 QLI-VDGNWNQVLVFTRTKHGANRLAEQLDKDGIPAMAIHSNKSQSAREKALGAFKAGKL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARG+DI  + HV N+++PN  E+Y+HRIGRTGRAG  G+A +LV  ++ K 
Sbjct: 298 RVLVATDIAARGIDIDALPHVVNYELPNVPEDYVHRIGRTGRAGAGGEAVSLVCVDEHKL 357

Query: 357 IDAIEKLIEKK-----VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           +  IE+ I +K     V     D ++   PL K   A+    R++ P P+ + G   +  
Sbjct: 358 LADIERTIRQKLERVIVPGFEPDPNARPEPLRKPQAAR--QPRRDFP-PRSAQGHGGQGH 414

Query: 412 NYSSQKS 418
           N  + +S
Sbjct: 415 NAQAPRS 421


>gi|323490564|ref|ZP_08095770.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
 gi|323395830|gb|EGA88670.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
          Length = 506

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 231/369 (62%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L +S   + +V   G+ + TPIQ  TI L ++  D+ G AQTGTGKT +F +P++  
Sbjct: 4   FSELNISETTLKSVKRMGFEEATPIQEGTIRLGMEGKDIIGQAQTGTGKTTAFGIPLIEK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     V+    LI+ PTRELA QV++   + G++ N+ +  + GG     Q + L+  
Sbjct: 64  IDTKDGNVQ---GLIIAPTRELAIQVSEELYRLGQDKNVRILSVYGGQEISRQIRALKNR 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH NR  L ++N+  L++DEAD ML+MGFI  IQ I + VP TRQTLL
Sbjct: 121 PQIIVGTPGRLLDHINRRTLKLDNVNTLILDEADEMLNMGFIEDIQTIMASVPDTRQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D +++++E F++ P+ +++ +   T E IE  +V +  +  +K   L +LL  Q
Sbjct: 181 FSATMPDAIRRIAEKFMKTPEIVKIKSKEMTVENIEQFYVKSVER--EKFDFLSRLLNVQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+F   K+ V  L  +L  +G+    IHG++ Q  RM +L  FK G I ++VA+
Sbjct: 239 QP-ELAIVFGRTKRRVDELAKALNIRGYLAEGIHGDLSQAKRMSVLKQFKAGKIDILVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E+
Sbjct: 298 DVAARGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAGKKGVAVTFVTPREMGYLSIVER 357

Query: 363 LIEKKVDWL 371
             +KK++ L
Sbjct: 358 TTKKKMEAL 366


>gi|58336606|ref|YP_193191.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           NCFM]
 gi|227903163|ref|ZP_04020968.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus acidophilus
           ATCC 4796]
 gi|58253923|gb|AAV42160.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           NCFM]
 gi|227869149|gb|EEJ76570.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus acidophilus
           ATCC 4796]
          Length = 495

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 152/384 (39%), Positives = 239/384 (62%), Gaps = 14/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+  ++ A+  +G+ + TPIQ +TIPL L+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLNEALLKAIKRSGFEEATPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I++K    ++    +I+EPTRELA Q  +   + G++    V ++ GG     Q + L+
Sbjct: 61  QIIDKKEKAIQ---AIIIEPTRELAIQTQEELFRLGRDERAHVQVVYGGADIGRQIRSLK 117

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LDH  RG + ++ ++ +V+DEAD MLDMGFI  I++I        Q
Sbjct: 118 HHVPSILVGTPGRLLDHLKRGTIDLDKVKTVVLDEADEMLDMGFIQDIESILKYAKNRNQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + ++ E F+ NP+ +++     TA+ I+  FV   A+ S+K  ++ +L+
Sbjct: 178 TLLFSATMPKPILRIGEKFMNNPEIVQIKAKELTADLIDQYFV--RAKESEKFDIMCRLI 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      ++F   K+ V  L   L+ +G++   IHG++ Q  RM +L  F+EG + ++
Sbjct: 236 DVQGP-DLAVVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE 383
           IE+L +KK       +S L PP +
Sbjct: 355 IEQLTKKK-------MSPLRPPTD 371


>gi|199598808|ref|ZP_03212220.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|229551599|ref|ZP_04440324.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus rhamnosus
           LMS2-1]
 gi|258509533|ref|YP_003172284.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
 gi|258540734|ref|YP_003175233.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
 gi|199590313|gb|EDY98407.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|229315064|gb|EEN81037.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus rhamnosus
           LMS2-1]
 gi|257149460|emb|CAR88433.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
 gi|257152410|emb|CAR91382.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
 gi|259650800|dbj|BAI42962.1| RNA helicase [Lactobacillus rhamnosus GG]
          Length = 502

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 149/368 (40%), Positives = 227/368 (61%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ A+  +G+ + TPIQ +TIPLVL+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFKELGLDHDLLKAIAQSGFEEATPIQAETIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++K     R  + L++ PTRELA Q  +   + G++  + V  + GG     Q ++L 
Sbjct: 61  QHIDKAD---RSIQALVISPTRELAIQTQEELYRLGRDKKIKVQAVYGGADIRRQIRQLA 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILDH  R  L + +++ LV+DEAD MLDMGFI  I+ I   +P  RQT
Sbjct: 118 DHPQIVVGTPGRILDHIGRHTLKLEHLDTLVLDEADEMLDMGFIDDIEKIVEQMPTERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + +++  F++ P  +++     TA+T+E  +V   A+  +K  ++ +L  
Sbjct: 178 LLFSATMPAAIMRLTNKFMKEPVIVKIKAKELTADTVEQYYVR--AKDYEKFDVMTRLFD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     +IF   K+ V  L   L+ +G+    IHG++ Q+ RM +L  FK G +  +V
Sbjct: 236 VQDP-DLALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG  G + T V   +I+++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIEYLHTI 354

Query: 361 EKLIEKKV 368
           E L +K++
Sbjct: 355 EDLTKKRM 362


>gi|152986038|ref|YP_001347685.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
 gi|150961196|gb|ABR83221.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
          Length = 553

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 149/369 (40%), Positives = 235/369 (63%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+ P V+ A+   GY +P+PIQ ++IPL+L+ HD+ G AQTGTGKTA+F LP+L+ 
Sbjct: 8   FAALGIHPNVLAAITAVGYEEPSPIQAQSIPLILEGHDMIGQAQTGTGKTAAFALPLLSR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  R   R P+ L+L PTRELA QVA   E Y K    + V  + GG P   Q K L +
Sbjct: 68  IDPSR---REPQMLVLVPTRELALQVATACETYSKQLPGVGVVAVYGGAPMGPQLKALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGR+ DH  R + L+  ++ LV+DEAD ML +GF+  ++ I   +P +RQT+
Sbjct: 125 GAQILVATPGRLCDHLRRDEKLLATVQRLVLDEADEMLKLGFMDDLEVIFEALPESRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L+ PK +++   + T   IE   +  +A   +K   +Q+LL+ 
Sbjct: 185 LFSATLPASIRGIAERHLKQPKHVKIAAKTQTVARIEQVHLMVHA--DQKAGSIQRLLEV 242

Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D +   I F   K+  ++    LE+QG+   A++G++ Q  R +++ + K+G++ ++
Sbjct: 243 EQFDAL---IAFVRTKQATLDYAELLERQGYRAAALNGDMPQAQRERVIESLKDGSLDIV 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+P + HV N D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  
Sbjct: 300 IATDVAARGLDVPRITHVLNIDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359

Query: 360 IEKLIEKKV 368
           IE++  +KV
Sbjct: 360 IERVTGQKV 368


>gi|148975453|ref|ZP_01812324.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
           bacterium SWAT-3]
 gi|145964881|gb|EDK30132.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
           bacterium SWAT-3]
          Length = 423

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 149/377 (39%), Positives = 231/377 (61%), Gaps = 9/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  ++  + +  +  PT +Q + IPLVL+  DV   AQTGTGKTA+F LP++  
Sbjct: 8   FNQLGLSEHLLATLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLPIIQR 67

Query: 63  LEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L   +  V    ++ R L+L PTRELA QV DN   Y K  +L V +  GG+  + Q   
Sbjct: 68  LLATKDNVIPNPKLVRALVLVPTRELAQQVFDNVTSYAKGTDLKVVVAYGGVSMKVQTDN 127

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  GAD+L+ TPGR++DH     ++++  E+LV+DEADRMLDMGF+P I+ I S +   R
Sbjct: 128 LRAGADILVATPGRLIDHMFTKNIMLSQTEVLVLDEADRMLDMGFMPDIKRILSRMNEVR 187

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSAT  ++++ ++   +Q+P  I+V   +STAET++           +K  LL  L
Sbjct: 188 QTLFFSATFDNKIKAIAHRMMQSPSEIQVTPTNSTAETVKQMVYPV--DKKRKSELLAYL 245

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S +  +  ++F   K+    L   L+  G    +I+G+  Q +R K L +FK G ++ 
Sbjct: 246 IGS-NNWQQVLVFTKTKQGTDALVKELKLDGIKAASINGDKSQGARQKALDDFKSGKVRA 304

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L++ ++   + 
Sbjct: 305 LIATDVAARGIDIQQLEQVVNYDMPYKAEDYVHRIGRTGRAGNSGLAISLMSHDEAYLLG 364

Query: 359 AIEKLIEKKV--DWLNG 373
           AIE+L++ ++  +WL G
Sbjct: 365 AIERLLDTRLPQEWLKG 381


>gi|54026656|ref|YP_120898.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
 gi|54018164|dbj|BAD59534.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
          Length = 602

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 152/361 (42%), Positives = 219/361 (60%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+  +++ A+ D GY  P+PIQ  TIP +L   DV G+AQTGTGKTA+F +P+L  
Sbjct: 31  FADLGIDDRILRAIADVGYESPSPIQAATIPPLLDGADVVGLAQTGTGKTAAFAIPILMG 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           LE      R PR L+L PTRELA QVA+ F +Y  +   L V  + GG  +  Q   L R
Sbjct: 91  LE---VTGRQPRALVLAPTRELAIQVAEAFGRYAAHMPGLHVLPIYGGQSYGVQLSGLRR 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  +G L ++ ++ LV+DEAD ML MGF   ++ I +  P  +Q  
Sbjct: 148 GAHVVVGTPGRVIDHLEKGTLDLSQLQYLVLDEADEMLKMGFQEDVERILADTPREKQVA 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K+S+ +L+ P  I V   + T   I   +V    Q  +K   L ++L+ 
Sbjct: 208 LFSATMPAAIRKISKQYLREPVEITVKAKTQTNTNITQRWVQVSHQ--RKLDALTRVLEV 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  IIF   K+    L   L  +GFS  AI+G+I Q  R + +   K G + ++VA
Sbjct: 266 E-PFEAMIIFVRTKQGTEELAEKLRARGFSAAAINGDIAQNQRERTIGQLKSGALDILVA 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G+A   VA  +   + AIE
Sbjct: 325 TDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGQALLFVAPRERHLLKAIE 384

Query: 362 K 362
           +
Sbjct: 385 R 385


>gi|51245265|ref|YP_065149.1| ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54]
 gi|50876302|emb|CAG36142.1| related to ATP-dependent RNA helicase [Desulfotalea psychrophila
           LSv54]
          Length = 424

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 150/370 (40%), Positives = 235/370 (63%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL  +++  V + GY  P+ IQ + IP+VL + DV  +A TGTGKTA F LPM+
Sbjct: 1   MSFAILGLCDELLQTVAEQGYTTPSQIQTEAIPVVLNQRDVMAVAHTGTGKTAGFTLPMV 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L  G + +    R L++ PTRELAAQVA++ + YG   N+      GG+  E Q  KL
Sbjct: 61  QLLSGGDSPQPCTVRALVITPTRELAAQVAESVQTYGSMMNIRTGAAFGGVRIEPQIAKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G DVL+ TPGR+LD +N+  +  + ++ILV+DEADRMLD+GFI  I++I +L+P  RQ
Sbjct: 121 QAGLDVLVATPGRLLDLYNQQAVSFDALKILVLDEADRMLDLGFIDDIRHIQTLLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT ++E++ ++   L +P  IEV+T  +  ++I+           +K ALL  L+
Sbjct: 181 TLMFSATFSEEIKSLAGGMLHDPVLIEVDTDKNIVDSIKQKMHPV--DQERKSALLIHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +  +  ++F   K+    L   L++ G +  +IH N  Q +R + L  FK G++ ++
Sbjct: 239 KKYN-WQQLLVFSRTKRGADTLVTQLKEAGINAESIHANRTQYARTRALDGFKNGSVVVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RG+D+  +  V NFD+P  AE+Y+HRIGRTGRAG  G A +  ++++ + + +
Sbjct: 298 VATDIASRGIDVHQLPCVINFDLPYVAEDYVHRIGRTGRAGTSGLAVSFFSEDEAQQLAS 357

Query: 360 IEKLIEKKVD 369
           IEKLI +K +
Sbjct: 358 IEKLIGRKFE 367


>gi|187931712|ref|YP_001891696.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712621|gb|ACD30918.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 441

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 150/365 (41%), Positives = 234/365 (64%), Gaps = 4/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+  +  A+   GY K TPIQ + IP+VL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MKFSDLGLNSLICSALEKKGYTKLTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GA++LI TPGR+LD +++  +  +++   V+DEADRMLDMGFI  ++ I +L+P   Q
Sbjct: 121 RKGAEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++  FL NP+ +  +  ++T + I    + T  + +K  AL+  L+
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQK-IYTLDKSNKINALI-SLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+ +   ++F   K     +   L   G S  AIHGN  Q +R K L++FK   I ++
Sbjct: 239 KDQN-LHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+ N AE+Y+HRIGRTGRAG+ G A +L++ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLISADEVESLSN 357

Query: 360 IEKLI 364
           IE LI
Sbjct: 358 IEHLI 362


>gi|126665223|ref|ZP_01736206.1| ATP-dependent RNA helicase DeaD [Marinobacter sp. ELB17]
 gi|126630593|gb|EBA01208.1| ATP-dependent RNA helicase DeaD [Marinobacter sp. ELB17]
          Length = 504

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 152/363 (41%), Positives = 222/363 (61%), Gaps = 7/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+LGL+P V+ AV   GY  PTPIQ ++IP +L    + G+AQTGTGKTA+F LP+L
Sbjct: 4   LSFAELGLNPAVLEAVTAVGYETPTPIQAQSIPALLSGRHLLGVAQTGTGKTAAFALPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           + ++     V  P+ L+L PTRELA QVA+ F  Y     N  V  + GG  F  Q K L
Sbjct: 64  SRVDPN---VNAPQILVLAPTRELAIQVAEAFSTYASKLPNFHVLPIYGGQDFFPQIKGL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA V++ TPGR+LDH  +G L ++N++ LV+DEAD ML MGFI  ++ I S  P   Q
Sbjct: 121 RRGAHVIVGTPGRMLDHLRKGTLKLDNLKALVLDEADEMLRMGFIDDVEAILSKTPDNCQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  +++KV++ +L++   + + + S T + I    +  YA+  +K   L ++L
Sbjct: 181 RALFSATMPPQIKKVAQTYLKDAVEVRIESASRTVDAISQYVLPVYAE--RKLDALTRIL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +      IIF   K   + L   L  +G +   ++G+++QR R + + + K G   ++
Sbjct: 239 EVE-PFDASIIFVRTKAETIVLAEKLAARGHAAAPLNGDLNQRQREQTVEDLKRGKKDIV 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+P + HV N+DVP   E YIHRIGRTGRAGR GKA  LV   +   +  
Sbjct: 298 VATDVAARGLDVPRITHVINYDVPYDTEAYIHRIGRTGRAGRDGKAILLVTPRERSWLRT 357

Query: 360 IEK 362
           +E+
Sbjct: 358 LER 360


>gi|119963381|ref|YP_948725.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
 gi|119950240|gb|ABM09151.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
          Length = 726

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 151/375 (40%), Positives = 230/375 (61%), Gaps = 9/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+  +V+ A+ D GY KP+PIQ  TIPL+L+  DV G+AQTGTGKTA+F +P L+ 
Sbjct: 73  FVDLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSR 132

Query: 63  LEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
           L +        R  + L+L PTRELA QVA+ F  Y K+ +  TV  + GG  +  Q   
Sbjct: 133 LAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAG 192

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RGA V++ TPGR++DH  +G L ++ ++ LV+DEAD ML MGF   ++ I    P TR
Sbjct: 193 LRRGAQVVVGTPGRVIDHIAKGSLDLSELQYLVLDEADEMLRMGFADDVEQIFQQTPETR 252

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q  LFSATM  +++++S+ +L NP  I V + ++T    +  ++     +  K   L ++
Sbjct: 253 QVALFSATMPGQIRRMSKQYLNNPAEISVKSKTTTGANTKQRYLQVMGPH--KLDALTRI 310

Query: 239 LQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ ++   +G+I F   K    +L   L+ +GF   AI+G+I Q+ R + +   KEG I 
Sbjct: 311 LEVEEF--DGVIAFVRTKMATEDLADKLKARGFQAAAINGDIPQQQRERTVDALKEGRID 368

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   +   +   +
Sbjct: 369 ILVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLL 428

Query: 358 DAIEKLIEKKVDWLN 372
            +IEK   + V+ ++
Sbjct: 429 RSIEKATRQPVEQMH 443


>gi|284040525|ref|YP_003390455.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
 gi|283819818|gb|ADB41656.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
          Length = 475

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 149/369 (40%), Positives = 228/369 (61%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L+ +++ AV + GY  PTPIQ KTIPL L  HDV GIAQTGTGKTA+++LP+L  
Sbjct: 6   FEQFELNRQLLNAVAELGYTVPTPIQQKTIPLSLGNHDVLGIAQTGTGKTAAYLLPIL-- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++   A+ + PR LIL PTREL  Q+     + GK  +L    L GG+  + Q + L  G
Sbjct: 64  MKVKYAQGKNPRALILAPTRELVMQINQAVSELGKYTDLRHLALYGGLGPKTQIETLRNG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR +D +  G+++   I  +V+DEAD+M+DMGF+P I++I  ++P  RQ LL
Sbjct: 124 VDIIVATPGRFMDLYRSGEIVTKEIRTMVLDEADKMMDMGFMPQIRSILEIIPTKRQNLL 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    ++++S  FL+ P ++EV   +STA+ +    +     +  K  +L  L++ +
Sbjct: 184 FSATFGGRVERLSSEFLEAPIKVEVTPQASTADMVSQV-IYEAPNFRTKINMLDYLMRQE 242

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFS---VCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           D  +  IIF   K    N+   L ++      +  IH N  Q +R+  +  FKEG IQ++
Sbjct: 243 D-FQRVIIFARTKGTADNIYKFLSRKVIEPEKIRVIHANKGQNTRINAMDAFKEGNIQVL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++D+AARG+D+ +V HV NFD+P   E+Y+HRIGRTGRA R G+A T + K +  H+  
Sbjct: 302 VSTDVAARGIDVAEVSHVINFDLPLIYEDYVHRIGRTGRANRTGEAITFLTKAEEYHVQK 361

Query: 360 IEKLIEKKV 368
           IE++I+  +
Sbjct: 362 IERIIKATI 370


>gi|220909835|ref|YP_002485146.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp.
           PCC 7425]
 gi|219866446|gb|ACL46785.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7425]
          Length = 457

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 152/368 (41%), Positives = 221/368 (60%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGLSP  V  +   G+ +PTPIQI+ IP +L   DV G AQTGTGKTA+F LP+L
Sbjct: 3   LSFSQLGLSPARVQRLEALGFNEPTPIQIQAIPPLLAGRDVIGQAQTGTGKTAAFALPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LIL PTRELA QV+ +   +  +  + V  + GG   E Q ++L 
Sbjct: 63  ERIDTQSPAVQ---ALILTPTRELAVQVSQSIYNFKADPKIRVLAIYGGQAIERQIERLH 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA VL+ TPGR+LD  NRG L +N +  LV+DEAD MLDMGF+P ++ I S  P  RQ 
Sbjct: 120 KGAQVLVGTPGRVLDLLNRGVLNLNALAWLVLDEADEMLDMGFMPDVKQILSQAPAQRQM 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM   + +++  FL++P+ I V  P +    IE         +SK   L  QL+ 
Sbjct: 180 AFFSATMAPPVYRLATQFLRSPETITVEHPKAAPSRIEQVAYKVPRGWSKSTTL--QLVL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  ++ IIF   +K    L   L+  G+SV   HG++ Q  R ++L  F++G I+ +V
Sbjct: 238 EMEDPESAIIFVRTRKVAAELTSQLQSHGYSVDEYHGDLSQSQRERLLQRFRQGQIRWVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL + D+ HV N+D+P+  E+Y+HRIGRTGRAG+ G A +L    +   +  I
Sbjct: 298 ATDIAARGLHVDDLTHVINYDLPDSVESYVHRIGRTGRAGKTGIAVSLFQPLERHKLGQI 357

Query: 361 EKLIEKKV 368
           E+ I +K+
Sbjct: 358 ERHIRQKL 365


>gi|254369445|ref|ZP_04985457.1| hypothetical protein FTAG_00428 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122395|gb|EDO66535.1| hypothetical protein FTAG_00428 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 441

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 157/398 (39%), Positives = 248/398 (62%), Gaps = 8/398 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+  +  A+   GY KPTPIQ + IP+VL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MKFSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++   ++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSGVIFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  +  +++   V+DEADRMLDMGFI  ++ I +L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++  FL NP+ +  +  ++T + I    + T  + +K  AL+  L+
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQK-IYTLDKSNKINALI-SLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+ +   ++F   K     +   L   G S  AIHGN  Q +R K L++FK   I ++
Sbjct: 239 KDQN-LHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+ N AE+Y+HRIGRTGRAG+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARK 395
           IE LI   +  + L G  ++ N P+    ++  N A+K
Sbjct: 358 IEHLIGHLLPREELEGFEATHNVPIT--SMSHKNKAKK 393


>gi|295107314|emb|CBL04857.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 445

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 157/418 (37%), Positives = 241/418 (57%), Gaps = 19/418 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS   + AV   GY  PTP+Q + IPL L+  DV   A TGTGKT +F LP++  
Sbjct: 37  FQDLGLSETTLAAVAQMGYNAPTPVQEQAIPLALEGRDVVAAAVTGTGKTTAFALPVIER 96

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++ + +   PR L++ PTRELA Q+     +  K   L V  ++GG+P++ Q  KL RG
Sbjct: 97  IDRAK-KPGSPRALVVSPTRELALQIDAACTQLAKGSGLRVVTVVGGVPYKGQLSKLSRG 155

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+ D   RG + + ++EILV+DEADRMLDMGF P ++ I +  P +RQTLL
Sbjct: 156 VDILVATPGRLHDLMERGDVKLRDVEILVLDEADRMLDMGFWPTMKKIVAATPSSRQTLL 215

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  ++ +     L++P  +EV     T++TIE   V   +   +K +LL+ LL  +
Sbjct: 216 FSATLDRKVMQSVSAILRDPAFVEVAHKGETSDTIEQFIVPVGSM--QKASLLRLLLAER 273

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + K  I+F + K         L++ GF   +IH +  Q  R + L+ F +G + ++VA+
Sbjct: 274 GS-KRVIVFTDTKTRAEICTGQLKRAGFRAESIHSDKTQAQRKRALAAFSKGDVDVLVAT 332

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ ARG+D+PD+ +V N+++P   ++Y+HRIGRTGRAG  G + + V+ E    +  IEK
Sbjct: 333 DVLARGIDVPDIAYVVNYELPENPDDYVHRIGRTGRAGEAGCSISFVSPEAKAQLLDIEK 392

Query: 363 LIEKKV--------DWLNGDLSSLNPPLEKIDIAQHNHAR--KNNPIPQKSTGFDRRK 410
           L+  K+        D    + +  N  + K        +R  + NP     TGF RR+
Sbjct: 393 LLGSKIPTLAVEGYDATEAERALANRFVSKTTRGSAAFSRSLRRNP-----TGFGRRR 445


>gi|311087784|gb|ADP67863.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 601

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 145/367 (39%), Positives = 235/367 (64%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL+P ++ ++ + GYVKP+PIQ   IPL+L+  DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FSFLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L      ++ P+ L+L PTRELA QVA+ F  + K    + V  L GG  +E Q + L +
Sbjct: 68  LN---INLKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMAQIPKEHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++S+ F++NPK I++ +  +T   I+  +   +  Y +K   L + L++
Sbjct: 185 LFSATMPEAIRRISKRFMRNPKEIKIQSNITTRPDIKQSY---WMVYGRKTDALIRFLEA 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K G + +++A
Sbjct: 242 ED-FSATIIFVRTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKNGRLDILIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  IE
Sbjct: 301 TDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 360

Query: 362 KLIEKKV 368
           + +++ +
Sbjct: 361 RTMKQSI 367


>gi|227509297|ref|ZP_03939346.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227512309|ref|ZP_03942358.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
 gi|227084484|gb|EEI19796.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
 gi|227191227|gb|EEI71294.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 502

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 149/384 (38%), Positives = 234/384 (60%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+  +G+ + TPIQ +TIP+VL   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLSDSLLSAISSSGFEEATPIQAETIPMVLNGEDVIGQAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+     V+    LI+ PTRELA Q  +   + GK+    V ++ GG     Q   L+
Sbjct: 61  QHLDFNNPNVQ---ALIISPTRELAIQTQEEVYRLGKDEKAKVQVVYGGADIRRQINSLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILDH +R  L + +++ LV+DEAD ML+MGF+  I++I    P  RQT
Sbjct: 118 SHPQIIVGTPGRILDHISRHTLKLEHVKTLVLDEADEMLNMGFLDDIESIIKQTPSDRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  ++++V   F+++P ++++     T + I+  +V    +  +K   + +   
Sbjct: 178 LLFSATMPPQIKRVGVQFMKDPHQVKIKAKELTTDLIDQYYVR--VKEYEKFDTMTRFFD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD  +  I+FC  K+ V  +   LE +G++   +HG++ Q  R +I++ FK+G + ++V
Sbjct: 236 VQDP-EVTIVFCRTKRRVDEVSKGLEARGYNAAGLHGDLTQARRTQIMNEFKQGKVDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  V HV+N+D+P   + Y+HR+GRTGRAG+HG + T     ++ ++  I
Sbjct: 295 ATDVAARGIDISGVTHVYNYDIPQDPDGYVHRVGRTGRAGKHGVSITFTTPNEMDYLHEI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           EKL   KV  L      L PP E+
Sbjct: 355 EKLT--KVRML-----PLKPPTEQ 371


>gi|227522395|ref|ZP_03952444.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus hilgardii
           ATCC 8290]
 gi|227090453|gb|EEI25765.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus hilgardii
           ATCC 8290]
          Length = 502

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 149/384 (38%), Positives = 234/384 (60%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+  +G+ + TPIQ +TIP+VL   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLSDSLLSAISSSGFEEATPIQAETIPMVLNGEDVIGQAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+     V+    LI+ PTRELA Q  +   + GK+    V ++ GG     Q   L+
Sbjct: 61  QHLDFNNPNVQ---ALIISPTRELAIQTQEEVYRLGKDEKAKVQVVYGGADIRRQINSLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILDH +R  L + +++ LV+DEAD ML+MGF+  I++I    P  RQT
Sbjct: 118 SHPQIIVGTPGRILDHISRHTLKLEHVKTLVLDEADEMLNMGFLDDIESIIKQTPSDRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  ++++V   F+++P ++++     T + I+  +V    +  +K   + +   
Sbjct: 178 LLFSATMPPQIKRVGVQFMKDPHQVKIKAKELTTDLIDQYYVR--VKEYEKFDTMTRFFD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD  +  I+FC  K+ V  +   LE +G++   +HG++ Q  R +I++ FK+G + ++V
Sbjct: 236 VQDP-EVTIVFCRTKRRVDEVSKGLEARGYNAAGLHGDLTQARRTQIMNEFKQGKVDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  V HV+N+D+P   + Y+HR+GRTGRAG+HG + T     ++ ++  I
Sbjct: 295 ATDVAARGIDISGVTHVYNYDIPQDPDGYVHRVGRTGRAGKHGVSITFTTPNEMDYLHEI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           EKL   KV  L      L PP E+
Sbjct: 355 EKLT--KVRML-----PLKPPTEQ 371


>gi|56478694|ref|YP_160283.1| ATP-dependent RNA helicase DeaD [Aromatoleum aromaticum EbN1]
 gi|56314737|emb|CAI09382.1| ATP-dependent RNA helicase DeaD [Aromatoleum aromaticum EbN1]
          Length = 658

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 148/373 (39%), Positives = 227/373 (60%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L   ++ A+ + GY  P+PIQ   IP +L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 46  FAQLDLRAPLLDALSEIGYETPSPIQAICIPHLLAGHDLLGEAQTGTGKTAAFALPLLDR 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     V+ P+ L+L PTRELA QVA+ F++Y KN     V  + GG     Q ++L R
Sbjct: 106 LDLA---VKNPQVLVLAPTRELAIQVAEAFQRYAKNLPGFHVLPVYGGQSMVVQLRQLAR 162

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  R  L ++++  LV+DEAD ML MGFI  ++ I    P  RQT 
Sbjct: 163 GAHVIVGTPGRVMDHIERKSLNLDSLTTLVLDEADEMLRMGFIDDVEWILQHTPAERQTA 222

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQLL 239
           LFSATM D +++V+  +L+ P+ +++   ++T  T    +C ++     + K   L ++L
Sbjct: 223 LFSATMPDAIRRVAHRYLREPREVKIKASTTTVSTTRQRYCQISV----AHKLDALTRIL 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++     IIF   K   V L   LE +G+S  A++G++ Q+ R +++   K G + ++
Sbjct: 279 EVEEDFDAAIIFVRTKTATVELADKLEARGYSAAALNGDMTQQLRERVIEQLKGGQLDIV 338

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P   E Y+HRIGRTGRAGR G A   VA  +++ +  
Sbjct: 339 VATDVAARGLDVSRISHVINYDIPYDTEAYVHRIGRTGRAGRTGSAILFVAPREMRMLKV 398

Query: 360 IEKLIEKKVDWLN 372
           IE+   + ++ L 
Sbjct: 399 IERATRQPIEALQ 411


>gi|172056656|ref|YP_001813116.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171989177|gb|ACB60099.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 530

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 150/366 (40%), Positives = 231/366 (63%), Gaps = 6/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  ++  VL  G+ + TPIQ +TIP+ L   D+ G AQTGTGKTA+F +P +  
Sbjct: 4   FRELNLSEALIKGVLKMGFEEATPIQAETIPVGLSGVDLIGQAQTGTGKTAAFGIPTIER 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+ R  + LIL PTRELA QVA+   + G+   +    + GG   + Q + L + 
Sbjct: 64  LD---AKSRYIQALILAPTRELAIQVAEELNRIGEVKRVHALPVYGGQQIDRQIRALRKN 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++DH NR  L +++++ +++DEAD ML+MGF+  I+ I   +P TRQTLL
Sbjct: 121 PQIVVATPGRLMDHMNRKTLNLDHVQTVILDEADEMLNMGFVEDIEKILGTLPPTRQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  +++K+++ F+  P  I+V     T E I+  F+    + S+K  +L +L+ + 
Sbjct: 181 FSATMPPQIRKIADRFMTTPTHIKVKAKEMTVENIDQSFIE--LKESQKFDVLCRLIDT- 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D+ +  IIF   KK V  +   L ++G++   +HG++ Q  R +++  FK+GTI ++VA+
Sbjct: 238 DSPELSIIFGRTKKRVDEMTEGLIQRGYTADGLHGDLTQAKRDQVIRRFKKGTIDILVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFDVP   E+Y+HRIGRTGRAG+ G A T V   +   I  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGSAITFVTPREFGQIKTIER 357

Query: 363 LIEKKV 368
           +  KK+
Sbjct: 358 VTNKKM 363


>gi|238749853|ref|ZP_04611357.1| ATP-dependent RNA helicase rhlE [Yersinia rohdei ATCC 43380]
 gi|238711782|gb|EEQ03996.1| ATP-dependent RNA helicase rhlE [Yersinia rohdei ATCC 43380]
          Length = 450

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 164/400 (41%), Positives = 244/400 (61%), Gaps = 12/400 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY  PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVEEQGYEVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L       KGR   R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    
Sbjct: 61  QLLSQNQQPIKGR---RPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I       +   ++K  L
Sbjct: 178 PARRQNLLFSATFSDEIKGLASKLLNNPASVEVARRNTASEQIAQSV--HFVDKNRKREL 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L Q++  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G
Sbjct: 236 LSQMI-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ 
Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 354

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           K +  IE+L+++++  +  D    +P ++   I      R
Sbjct: 355 KLLRDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGR 394


>gi|23098064|ref|NP_691530.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831]
 gi|22776289|dbj|BAC12565.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 495

 Score =  290 bits (742), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 147/369 (39%), Positives = 227/369 (61%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG+S  ++ A+   G+ + TPIQ +TIP  L+ HDV G AQTGTGKTA+F +P++  
Sbjct: 4   FNELGVSAPIMKALEKMGFEEATPIQAETIPHALEGHDVIGQAQTGTGKTAAFGIPLIN- 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             K  A++R  + LI+ PTRELA QVA+   +  K  ++    + GG P + Q + L+ G
Sbjct: 63  --KINAKLRKVQGLIVAPTRELAIQVAEEINRLAKFKSVRALAIYGGQPMDRQIRALKDG 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  R  + ++ +   V+DEAD ML+MGFI  I+ I   +P  RQTLL
Sbjct: 121 PQIVVATPGRLLDHMRRKTIRIDQVHTAVLDEADEMLNMGFIDDIREILKGIPEERQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++ ++   ++ PK ++V     T E I+  F+    +Y  K   L   L   
Sbjct: 181 FSATMPKEIRNIATTLMKEPKEVKVKAKEMTVENIDQYFIEIPEKY--KFDTLNNHLDI- 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           ++ +  IIF   KK V  +   L+ +G+    IHG++ Q  RM +L  FK+G + ++VA+
Sbjct: 238 NSPELAIIFARTKKRVDEVAEGLQARGYRSEGIHGDLTQGKRMSVLKKFKQGRVDVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G+A + +   ++ H++ IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGEAISFITPREMAHLNLIEQ 357

Query: 363 LIEKKVDWL 371
             + K+  +
Sbjct: 358 TTKSKMKRM 366


>gi|148973895|ref|ZP_01811428.1| RhlE [Vibrionales bacterium SWAT-3]
 gi|145965592|gb|EDK30840.1| RhlE [Vibrionales bacterium SWAT-3]
          Length = 401

 Score =  290 bits (742), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 155/373 (41%), Positives = 230/373 (61%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V AV   GY KPT IQ K IP+VL   ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSSPIVKAVAKQGYEKPTSIQEKAIPIVLSGKNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R +  R +IL PTRELA QV  N +KY K  NLT   + GG+ ++ Q  +L
Sbjct: 61  EMLSKGETQRKKRIRAVILTPTRELAVQVEQNIKKYAKFLNLTSLAMYGGVSYQHQKDRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR++D + +  +  + +E+LV+DEADRMLDMGFI  I  I + +P   Q
Sbjct: 121 IEGVDILVATPGRLIDMYGQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIARLPQDVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++  ++ ++++ + + + I +    ++   IE   V       +K ALL  ++
Sbjct: 181 NLLFSATLSTPVRALAKSAISDAEEISIAKTDASKANIEQWLVTV--DKDRKSALLSHMI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      +IF   K     L   LEK+G    A H    Q  R KIL++FK+G ++ +
Sbjct: 239 -TEGNWDQALIFIETKHGAAKLVAQLEKRGIQAEAFHSGRSQAIREKILADFKKGHLKFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI ++  V N+D+P  A++Y+HRIGRTGRA   G+A + ++K++ K++  
Sbjct: 298 VATGVAARGIDIDNLPRVVNYDMPFPADDYVHRIGRTGRADATGEAISFLSKDNFKNLCI 357

Query: 360 IEK----LIEKKV 368
           IEK    LIE++V
Sbjct: 358 IEKRLGHLIERRV 370


>gi|134299771|ref|YP_001113267.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134052471|gb|ABO50442.1| ATP-dependent RNA helicase DbpA [Desulfotomaculum reducens MI-1]
          Length = 532

 Score =  290 bits (742), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 148/361 (40%), Positives = 223/361 (61%), Gaps = 6/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L  ++V  + + G+ +PTPIQ   +P VL  +D+ G AQTGTGKTA+F +PM+  
Sbjct: 10  FGNLELDRRIVDGLKEMGFEEPTPIQQLAVPQVLAGYDMIGQAQTGTGKTAAFSIPMI-- 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E+   R R  +T+I+ PTRELA QVA+   K G+   + V  + GG   E Q + L  G
Sbjct: 68  -ERLNPRKREVQTIIITPTRELAIQVAEEISKIGRFSRIKVLPIYGGQSIERQIRSLRLG 126

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+LDH  R  L ++ ++++++DEAD MLDMGFI  I+ I    P  RQTLL
Sbjct: 127 VQVVVGTPGRLLDHLRRQTLKVDQVDMVILDEADEMLDMGFIEDIEEIIRHTPAERQTLL 186

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+ ++++ ++ +PK + V+  + T   IE  F    A    K   L ++L   
Sbjct: 187 FSATMPQEIIRLAQQYMTDPKYVTVSKTNLTVPQIEQVFYE--APEKNKLEALCRILDIS 244

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D +  GI+FC  K+ V  L   L+ +GF+  A+HG++ Q+ R  ++  F+   ++L+VA+
Sbjct: 245 D-ISQGILFCRTKRGVDELVAGLQARGFAAAALHGDLSQQQRNTVMRQFRSSEVELLVAT 303

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV N+D+P   E Y+HRIGRTGRAGR G A T+++  + + +  IE 
Sbjct: 304 DVAARGLDIEGVSHVINYDIPQDPEFYVHRIGRTGRAGRSGVAITIISPREYRQLRQIEN 363

Query: 363 L 363
           +
Sbjct: 364 I 364


>gi|119773524|ref|YP_926264.1| ATP-dependent RNA helicase RhlE [Shewanella amazonensis SB2B]
 gi|119766024|gb|ABL98594.1| ATP-dependent RNA helicase RhlE [Shewanella amazonensis SB2B]
          Length = 464

 Score =  290 bits (742), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 164/423 (38%), Positives = 247/423 (58%), Gaps = 18/423 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+P +  A+    Y +PT IQ K IP+ L   ++   AQTGTGKTA+F LP++
Sbjct: 1   MSFARLGLAPAITSALESLNYQQPTEIQQKAIPVALSGRNLLAAAQTGTGKTAAFGLPLI 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R +IL PTREL  QVADN   Y  N  LTV  + GG+  +AQ + L
Sbjct: 61  ERLSQGKTERKKRVRAVILAPTRELVVQVADNLSAYAANLPLTVLAMYGGVDMQAQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+ D +++  +    I++LV+DEADRMLDMGFI  I ++ S +P  RQ
Sbjct: 121 IAGVDILVATPGRLKDMYHQRAVYFEEIQVLVLDEADRMLDMGFIEVINDLISRMPTNRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++  ++++++  + +P  I +  PS   + I    V        K ALL  L+
Sbjct: 181 NLLFSATLSPRIRELAKTAVPDPVEIAIAKPSK--KEISQWLVTV--DKDTKSALLSHLI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q++   +  +IF   K     L   LEK+G    A H    Q  R ++LS FK+G++Q +
Sbjct: 237 QTEQ-WQQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAVREQVLSEFKDGSLQYL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+D+  +  V N+D+P   + YIHRIGRTGRAG  G+A +L++K+D K++  
Sbjct: 296 VATGVAARGIDVDKLERVVNYDLPFPPDEYIHRIGRTGRAGMTGEAVSLLSKDDFKNLCM 355

Query: 360 IEK----LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD-RRKKNYS 414
           IE     +IE++V  + G       P + I ++  ++  K+ P  Q S+    +R    S
Sbjct: 356 IESRLGHVIERRV--IEG-----FEPKKPIPVSILDYKPKSQPKAQPSSELSPQRNSQPS 408

Query: 415 SQK 417
           SQ+
Sbjct: 409 SQR 411


>gi|15608393|ref|NP_215769.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis H37Rv]
 gi|15840699|ref|NP_335736.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           CDC1551]
 gi|148661040|ref|YP_001282563.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis H37Ra]
 gi|148822470|ref|YP_001287224.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis F11]
 gi|215403092|ref|ZP_03415273.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis 02_1987]
 gi|215410888|ref|ZP_03419696.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215445431|ref|ZP_03432183.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis T85]
 gi|218752952|ref|ZP_03531748.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis GM 1503]
 gi|253799702|ref|YP_003032703.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           1435]
 gi|254231510|ref|ZP_04924837.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis C]
 gi|254550260|ref|ZP_05140707.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289554958|ref|ZP_06444168.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           605]
 gi|289744998|ref|ZP_06504376.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           02_1987]
 gi|289757351|ref|ZP_06516729.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis T85]
 gi|289761405|ref|ZP_06520783.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis GM 1503]
 gi|297633802|ref|ZP_06951582.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           4207]
 gi|297730788|ref|ZP_06959906.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           R506]
 gi|298524756|ref|ZP_07012165.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306775422|ref|ZP_07413759.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu001]
 gi|306781666|ref|ZP_07420003.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu002]
 gi|306788337|ref|ZP_07426659.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu004]
 gi|306792663|ref|ZP_07430965.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu005]
 gi|306797070|ref|ZP_07435372.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu006]
 gi|306802950|ref|ZP_07439618.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu008]
 gi|306807140|ref|ZP_07443808.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu007]
 gi|306967339|ref|ZP_07480000.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu009]
 gi|306971531|ref|ZP_07484192.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu010]
 gi|307079244|ref|ZP_07488414.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu011]
 gi|307083813|ref|ZP_07492926.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu012]
 gi|313658120|ref|ZP_07815000.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           V2475]
 gi|1706338|sp|Q11039|DEAD_MYCTU RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|1480333|emb|CAB00899.1| PROBABLE COLD-SHOCK DEAD-BOX PROTEIN A HOMOLOG DEAD (ATP-dependent
           RNA helicase deaD homolog) [Mycobacterium tuberculosis
           H37Rv]
 gi|13880887|gb|AAK45550.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           CDC1551]
 gi|124600569|gb|EAY59579.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis C]
 gi|148505192|gb|ABQ73001.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis H37Ra]
 gi|148720997|gb|ABR05622.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis F11]
 gi|253321205|gb|ACT25808.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           1435]
 gi|289439590|gb|EFD22083.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           605]
 gi|289685526|gb|EFD53014.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           02_1987]
 gi|289708911|gb|EFD72927.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis GM 1503]
 gi|289712915|gb|EFD76927.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis T85]
 gi|298494550|gb|EFI29844.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308216042|gb|EFO75441.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu001]
 gi|308325627|gb|EFP14478.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu002]
 gi|308335025|gb|EFP23876.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu004]
 gi|308338833|gb|EFP27684.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu005]
 gi|308342518|gb|EFP31369.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu006]
 gi|308346383|gb|EFP35234.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu007]
 gi|308350324|gb|EFP39175.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu008]
 gi|308354954|gb|EFP43805.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu009]
 gi|308358901|gb|EFP47752.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu010]
 gi|308362864|gb|EFP51715.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu011]
 gi|308366530|gb|EFP55381.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu012]
 gi|323720210|gb|EGB29309.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           CDC1551A]
 gi|326902876|gb|EGE49809.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           W-148]
 gi|328459448|gb|AEB04871.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           4207]
          Length = 563

 Score =  290 bits (742), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 146/361 (40%), Positives = 222/361 (61%), Gaps = 9/361 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL + P+V+ A+ D GY  PT IQ  TIP ++   DV G+AQTGTGKTA+F +PML+ 
Sbjct: 15  FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++      ++P+ L+L PTRELA QVA+ F +YG   + L V  + GG  +  Q   L R
Sbjct: 75  ID---ITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRR 131

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  R  L ++ ++ LV+DEAD ML MGF   ++ I S  P  +Q  
Sbjct: 132 GAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVA 191

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K+S  +L +P  +     ++ AE I   ++    Q ++K   L ++L+ 
Sbjct: 192 LFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYI----QVARKMDALTRVLEV 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  I+F   K+    +   L  +GFS  AI G++ Q  R + ++  ++G I ++VA
Sbjct: 248 E-PFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  ++  + AIE
Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366

Query: 362 K 362
           K
Sbjct: 367 K 367


>gi|167969576|ref|ZP_02551853.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis H37Ra]
          Length = 563

 Score =  290 bits (742), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 146/361 (40%), Positives = 222/361 (61%), Gaps = 9/361 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL + P+V+ A+ D GY  PT IQ  TIP ++   DV G+AQTGTGKTA+F +PML+ 
Sbjct: 15  FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++      ++P+ L+L PTRELA QVA+ F +YG   + L V  + GG  +  Q   L R
Sbjct: 75  ID---ITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRR 131

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  R  L ++ ++ LV+DEAD ML MGF   ++ I S  P  +Q  
Sbjct: 132 GAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVA 191

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K+S  +L +P  +     ++ AE I   ++    Q ++K   L ++L+ 
Sbjct: 192 LFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYI----QVARKMDALTRVLEV 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  I+F   K+    +   L  +GFS  AI G++ Q  R + ++  ++G I ++VA
Sbjct: 248 E-PFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  ++  + AIE
Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366

Query: 362 K 362
           K
Sbjct: 367 K 367


>gi|59800607|ref|YP_207319.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|194097783|ref|YP_002000826.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998282|ref|ZP_04718206.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae 35/02]
 gi|240013464|ref|ZP_04720377.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI18]
 gi|240015903|ref|ZP_04722443.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA6140]
 gi|240080042|ref|ZP_04724585.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA19]
 gi|240112252|ref|ZP_04726742.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
 gi|240114997|ref|ZP_04729059.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
 gi|240117282|ref|ZP_04731344.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
 gi|240120536|ref|ZP_04733498.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID24-1]
 gi|240122833|ref|ZP_04735789.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
 gi|240125029|ref|ZP_04737915.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           SK-92-679]
 gi|240127543|ref|ZP_04740204.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|254493059|ref|ZP_05106230.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae 1291]
 gi|260441187|ref|ZP_05795003.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI2]
 gi|268594137|ref|ZP_06128304.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268596188|ref|ZP_06130355.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268598313|ref|ZP_06132480.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
 gi|268600665|ref|ZP_06134832.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
 gi|268602977|ref|ZP_06137144.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
 gi|268681449|ref|ZP_06148311.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
 gi|268683617|ref|ZP_06150479.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-92-679]
 gi|268685920|ref|ZP_06152782.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-93-1035]
 gi|291044521|ref|ZP_06570230.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293397657|ref|ZP_06641863.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
 gi|59717502|gb|AAW88907.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|193933073|gb|ACF28897.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512099|gb|EEH61444.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae 1291]
 gi|268547526|gb|EEZ42944.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268549976|gb|EEZ44995.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268582444|gb|EEZ47120.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
 gi|268584796|gb|EEZ49472.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
 gi|268587108|gb|EEZ51784.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
 gi|268621733|gb|EEZ54133.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
 gi|268623901|gb|EEZ56301.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-92-679]
 gi|268626204|gb|EEZ58604.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-93-1035]
 gi|291011415|gb|EFE03411.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291611603|gb|EFF40672.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
 gi|317163562|gb|ADV07103.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 457

 Score =  290 bits (742), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 161/423 (38%), Positives = 253/423 (59%), Gaps = 21/423 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N  EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKAEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +K  LL++
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTFQKRNLLER 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+YIHRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYIHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416
           +AI++L   K+             +E+I+  +     +    P+K+   + R++N Y S 
Sbjct: 362 EAIKELTGNKL------------LIERIEGFEPRWWEQEGSKPEKTETSEPRQRNRYESA 409

Query: 417 KSH 419
           ++ 
Sbjct: 410 RAQ 412


>gi|296129739|ref|YP_003636989.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
 gi|296021554|gb|ADG74790.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
          Length = 581

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 146/361 (40%), Positives = 218/361 (60%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL P+V+ AV   G+  PTP+Q +TIP +L   DV G+AQTGTGKTA+F LP+L  
Sbjct: 17  FADLGLDPRVLSAVHGLGFTAPTPVQAQTIPALLAGRDVVGVAQTGTGKTAAFGLPLLQS 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++   A V++   ++L PTRELA QVAD    +  +   L V  + GG P+  Q + L R
Sbjct: 77  VDPDVAAVQV---VVLTPTRELAMQVADALTSFAADMPGLQVVAVYGGSPYLPQQRALAR 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH +R  L ++++ +LV+DEAD ML MGF   +  + S  P  RQ  
Sbjct: 134 GAQVVVGTPGRVIDHIDRRTLRLDDVRMLVLDEADEMLRMGFAEDVDKVLSGTPAGRQVA 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  ++++V++  L NP  + V+  SST E++   +      Y  K   L ++L  
Sbjct: 194 LFSATMPPQIRRVADQHLVNPVSVAVSRQSSTVESVRQTY--AVVPYRHKAGALARVLAV 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D     I+F   ++    + + L ++G +   I G++ Q  R +I+   + GT+ ++VA
Sbjct: 252 SDA-DAAIVFVRTREAAEEIGNVLVQRGIAAAHISGDVAQADRERIVERLRSGTLDVLVA 310

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N D+P   E Y+HRIGRTGRAGR G+A T V   +   +  IE
Sbjct: 311 TDVAARGLDVERIGLVVNLDLPREPEAYVHRIGRTGRAGRTGEALTFVTPSERPRLRQIE 370

Query: 362 K 362
           +
Sbjct: 371 R 371


>gi|145299222|ref|YP_001142063.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851994|gb|ABO90315.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 463

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 163/366 (44%), Positives = 238/366 (65%), Gaps = 5/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLSP ++ AV + GY +PTPIQ + IP VL   DV G AQTGTGKTA F LPML
Sbjct: 1   MSFNELGLSPHILRAVKELGYEQPTPIQQQAIPAVLAGQDVLGGAQTGTGKTAGFTLPML 60

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L    GR   R  R L+L PTRELAAQV ++  KY  +      +  GG+  +   + 
Sbjct: 61  HRLMANHGRGGRRQVRALVLTPTRELAAQVGESIIKYAHHLPFRTLIAYGGVSIKPNLEA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++ G D+L+ TPGR+LD   +  L +  +E+LV+DEADRMLDMGFI  I+ I   +P  R
Sbjct: 121 IKLGVDILVATPGRLLDLLTQRALTLTELEVLVLDEADRMLDMGFITDIRRIMKALPEER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT ++E+++++++ L++P  IEV+  +STAE +    +       +K  LL  +
Sbjct: 181 QTLLFSATFSNEIKELADDLLKSPTLIEVSPSNSTAEQVNQRIIKV--DRERKRELLSHM 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  ++  +  ++F   K+    L H +EK G +  AIHG+  Q +R + L++F+EG +++
Sbjct: 239 I-GRNNWQRVLVFVRTKQIADRLAHQMEKDGLNTVAIHGDKSQGARNRALADFREGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV NF++P  AE+YIHRIGRTGRAGR G+A +LV++++   + 
Sbjct: 298 LVATDIAARGLDIDQLPHVINFELPQVAEDYIHRIGRTGRAGRGGEAISLVSQDEQDQLK 357

Query: 359 AIEKLI 364
           AIE LI
Sbjct: 358 AIESLI 363


>gi|91228876|ref|ZP_01262779.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
 gi|91187564|gb|EAS73893.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
          Length = 419

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 152/385 (39%), Positives = 239/385 (62%), Gaps = 6/385 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++FADLG+  K++  + +   V PTP+Q K+IP VL   ++   AQTGTGKTA+F LP++
Sbjct: 3   VNFADLGIEQKLIETLGNLNIVTPTPVQEKSIPHVLAGKNLLAAAQTGTGKTAAFGLPII 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++ +     P+ LIL PTRELA QV DN  +Y     L +  + GG     Q +KLE
Sbjct: 63  QTVQQKKLN-GTPQALILVPTRELAQQVFDNLNQYSAETELRIVCVYGGTSIGVQKRKLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+LI TPGR+LDH   G + ++   +LV+DEADRMLDMGF P +Q I   +P  +Q 
Sbjct: 122 EGADILIATPGRLLDHLFNGNVNISKTGMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQI 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    ++ ++   +++P  +EV+  ++TAET+            +K  LL  L+ 
Sbjct: 182 LLFSATFEKRIKTIAYKLMESPVEVEVSPANTTAETVTQMVYPV--DKKRKRELLAYLIG 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++  +  ++F   K+    L   L+  G    +I+G+  Q +R + L  FK+G ++ ++
Sbjct: 240 SRN-WQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++   + AI
Sbjct: 299 ATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLQAI 358

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLE 383
           E L+++++  +WL G   SL   +E
Sbjct: 359 ENLLDQRLPQEWLAGFEPSLVEEVE 383


>gi|260663734|ref|ZP_05864622.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
 gi|260551785|gb|EEX24901.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
          Length = 495

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 151/384 (39%), Positives = 235/384 (61%), Gaps = 17/384 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGLS K++ A+  +GY + TPIQ +TIP+VL   DV G AQTGTGKTA+F LP +  
Sbjct: 6   FSELGLSNKLLKAIQRSGYEEATPIQEQTIPMVLAGKDVIGQAQTGTGKTAAFGLPTIEH 65

Query: 63  LEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++     V  P  + LI+ PTRELA Q  +   + GK   + V ++ GG     Q + LE
Sbjct: 66  VD-----VENPAIQALIISPTRELAIQTEEELFRLGKEKRVKVQVVYGGADIRRQIRSLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGR+ DH  RG + ++ ++ LV+DEAD ML+MGF+  I++I    P  RQT
Sbjct: 121 KNPQILVGTPGRLRDHLRRGTVDLSGVQTLVLDEADEMLNMGFLEDIEDIIKQTPSERQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++++   F+ +P+ +++     T + ++  +V   A+  +K  ++ +++ 
Sbjct: 181 LLFSATMPPEIKRIGVQFMHDPQTVKIKAKELTTDLVDQYYVR--AKDYEKFDIMTRMID 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     I+F   K+ V  L   L  +G++   IHG++ Q  R KI+  FKEG + ++V
Sbjct: 239 VQDPDLT-IVFGRTKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P+  ++Y+HRIGRTGRAG HG + T V   ++ ++  I
Sbjct: 298 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMNYLHEI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           EKL   +       +  L PP E+
Sbjct: 358 EKLTRAR-------MLPLKPPTEE 374


>gi|15616977|ref|NP_240190.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681730|ref|YP_002468116.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682285|ref|YP_002468669.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471430|ref|ZP_05635429.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|11386733|sp|P57453|DEAD_BUCAI RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|25403610|pir||D84973 ATP-dependent RNA helicase deaD [imported] - Buchnera sp.  (strain
           APS)
 gi|10039042|dbj|BAB13076.1| ATP-dependent RNA helicase deaD [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219622018|gb|ACL30174.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624573|gb|ACL30728.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311086109|gb|ADP66191.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086682|gb|ADP66763.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087268|gb|ADP67348.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 601

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 145/367 (39%), Positives = 235/367 (64%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL+P ++ ++ + GYVKP+PIQ   IPL+L+  DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FSFLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L      ++ P+ L+L PTRELA QVA+ F  + K    + V  L GG  +E Q + L +
Sbjct: 68  LN---INLKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMAQIPKEHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++S+ F++NPK I++ +  +T   I+  +   +  Y +K   L + L++
Sbjct: 185 LFSATMPEAIRRISKRFMRNPKEIKIQSNITTRPDIKQSY---WMVYGRKTDALIRFLEA 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K G + +++A
Sbjct: 242 ED-FSATIIFVRTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKNGRLDILIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  IE
Sbjct: 301 TDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 360

Query: 362 KLIEKKV 368
           + +++ +
Sbjct: 361 RTMKQSI 367


>gi|313667868|ref|YP_004048152.1| ATP-dependent RNA helicase [Neisseria lactamica ST-640]
 gi|313005330|emb|CBN86763.1| putative ATP-dependent RNA helicase [Neisseria lactamica 020-06]
          Length = 457

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 161/423 (38%), Positives = 254/423 (60%), Gaps = 21/423 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALALQGYETPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +K  LL++
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTFQKRNLLER 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416
           +AI++L   K+             +E+I+  +     +    P+K+   + R++N Y S 
Sbjct: 362 EAIKELTGNKL------------LIERIEGFEPRWWEQEGSKPEKTETSEPRQRNRYESA 409

Query: 417 KSH 419
           K+ 
Sbjct: 410 KAQ 412


>gi|126728206|ref|ZP_01744022.1| putative ATP-dependent RNA helicase protein [Sagittula stellata
           E-37]
 gi|126711171|gb|EBA10221.1| putative ATP-dependent RNA helicase protein [Sagittula stellata
           E-37]
          Length = 425

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 148/371 (39%), Positives = 222/371 (59%), Gaps = 5/371 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LGL P+++  + D     PTPIQ + IP  L   DV G+AQTGTGKTA+F LP++T + +
Sbjct: 2   LGLPPRLLTNLADLNITDPTPIQSQAIPHALNGRDVMGLAQTGTGKTAAFGLPIVTTIMR 61

Query: 66  GRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            + R   +    LIL PTRELA Q+ DN   Y  N  + + L+ GG     Q  +L +G 
Sbjct: 62  DQTRPGPKQVHGLILAPTRELAKQIVDNLRAYAANTPVKIGLVTGGNSINGQINRLAKGT 121

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
           D+L+ TPGR++D   +  + ++    LV+DEAD+MLD+GFI  ++ I  ++P  RQT+LF
Sbjct: 122 DLLVATPGRLIDLMEQKAVRLDATRFLVLDEADQMLDLGFIHALRQIARVLPKERQTMLF 181

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM  ++ +++  +L +P RIEV  P    E IE      + +   K  LL   L    
Sbjct: 182 SATMPKQMAEIASAYLTDPVRIEVTPPGKPVERIEQSV--HFVEQKAKTPLLVHHLDLHR 239

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
           T +  ++F   K     L   LE +GF+  +IHGN  Q  R + L  F+EG + ++VA+D
Sbjct: 240 T-EAALVFARTKHGAEKLKRHLEDKGFAAGSIHGNKSQGQRDRALKAFREGELTVLVATD 298

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARG+DIP V +V+N+D+PN A+NY+HRIGRT RAGR G A    + E++    AI K+
Sbjct: 299 VAARGIDIPSVRYVYNYDLPNVADNYVHRIGRTARAGRDGTAIAYCSAEEMGEFKAIVKV 358

Query: 364 IEKKVDWLNGD 374
           + +++   +G+
Sbjct: 359 MGREIAVASGE 369


>gi|114563324|ref|YP_750837.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114334617|gb|ABI71999.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 439

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 158/372 (42%), Positives = 229/372 (61%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL   +V A+ + GY +PTPIQ +TIP++L+  ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSTLGLRDTIVNALHEVGYSQPTPIQQQTIPVILKGKNLLAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L      R +  R LIL PTRELA QV  N  +Y K+  LT   + GG+  + Q + L
Sbjct: 61  ERLADTEIQRAKRIRALILTPTRELAVQVHANVVQYAKHLPLTSIAIYGGVDEKPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + +E+LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IDGVDILVATPGRLLDLYTQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIDKLPSERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT++++++ +++  ++ P  I V     +A  IE     T     KK ALL  L+
Sbjct: 181 SLLFSATLSNQVRALAKTAIKRPVEISVIADRDSAPKIEQWL--TTVDKDKKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++     +IF   K+    L   LEK+  +   IH    Q  R +IL++FK G I+ +
Sbjct: 239 KTEE-WNQALIFIETKQGAAKLVSQLEKRDIAAECIHSGRSQPVREQILADFKSGNIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI D+  V N+D+P  A++YIHRIGRTGRAG  G A + V+ +D K++  
Sbjct: 298 VATGIAARGIDIDDLSRVVNYDLPYPADDYIHRIGRTGRAGAAGVAISFVSNDDFKNLCM 357

Query: 360 IEK----LIEKK 367
           IE     LIE+K
Sbjct: 358 IESRLGHLIERK 369


>gi|146329248|ref|YP_001209905.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
 gi|146232718|gb|ABQ13696.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
          Length = 442

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 152/374 (40%), Positives = 229/374 (61%), Gaps = 8/374 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGLS +++  +   GY KPTPIQ + IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 5   FSELGLSTQILRTISRHGYEKPTPIQARAIPLALQGRDLLLSAQTGSGKTAAFVLPILQQ 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L     + ++PR LI+ PTRELA QV D+  +Y + +  L    L+GG  ++ Q + L++
Sbjct: 65  LAAEPTKSKLPRALIVIPTRELAQQVQDSVFQYSREFKELYSITLVGGTAYQKQIRALKK 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH   G L ++ I  LV+DEADRMLDMGF   +  I    P  RQT+
Sbjct: 125 GVSIVVATPGRLLDHVREGHLDLSQIRYLVLDEADRMLDMGFSDDMHAIIKQCPQNRQTI 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT    + K++  F  N ++I +   +S  E I + F    A    K A+L +LL +
Sbjct: 185 MSSATWDGNVGKIAAGFTHNAEKIIIAPETSHIEEISY-FTDDQAH---KNAVLDRLL-A 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + +   I+F   K     + H L + GF    +HG++ Q+ R +I+  F+ G I ++VA
Sbjct: 240 DEAVTQCIVFTATKSTTETVAHHLYENGFQAQFLHGDLQQQKRNRIIERFRNGQINVLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP + HV N+D+P ++E+Y+HRIGR+GRAGR G A  LV+  D   +  IE
Sbjct: 300 TDIAARGIDIPAISHVINYDLPRQSEDYVHRIGRSGRAGRSGVALNLVSLTDRAAMAHIE 359

Query: 362 KLIEK--KVDWLNG 373
           + +++  K D L G
Sbjct: 360 RYLKRAIKTDVLEG 373


>gi|169628494|ref|YP_001702143.1| cold-shock DEAD box protein A homolog (ATP-dependent RNA helicase
           DEAD homolog) [Mycobacterium abscessus ATCC 19977]
 gi|169240461|emb|CAM61489.1| Probable cold-shock DEAD box protein A homolog (ATP-dependent RNA
           helicase DEAD homolog) [Mycobacterium abscessus]
          Length = 598

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 150/367 (40%), Positives = 232/367 (63%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL ++P+V+ AV D GY  P+ IQ  TIP +L   DV G+AQTGTGKTA+F +P+L+ 
Sbjct: 25  FADLHIAPEVLRAVSDVGYETPSAIQAATIPPLLAGSDVVGLAQTGTGKTAAFAIPILSK 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++      +  + L+L PTRELA QVA+ F +YG +   L V  + GG  +  Q   L+R
Sbjct: 85  ID---LTSKDTQALVLAPTRELALQVAEAFGRYGAHMPKLNVLPIYGGQSYVVQLAGLKR 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  RG L +++++ LV+DEAD ML MGF   ++ I +  P  +Q  
Sbjct: 142 GAQVVVGTPGRVIDHLERGTLDLSHLDYLVLDEADEMLTMGFAEDVERILADTPEYKQVA 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L +P  I+++  +STAE I   F+       +K   L ++L+ 
Sbjct: 202 LFSATMPTTIRRLTKKYLHDPVEIKIDAKTSTAENITQRFIQVAG--PRKMDALTRILEV 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T +  I+F   K+    +   L+ +GF+  AI+G+I+Q  R + ++  K GTI ++VA
Sbjct: 260 E-TFEAMIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKAGTIDILVA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  +   + AIE
Sbjct: 319 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTAVLFVSPRERHLLKAIE 378

Query: 362 KLIEKKV 368
           K    K+
Sbjct: 379 KTTGAKL 385


>gi|227548399|ref|ZP_03978448.1| superfamily II helicase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079443|gb|EEI17406.1| superfamily II helicase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 683

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 142/370 (38%), Positives = 231/370 (62%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L   V+ AV   G+ +P+PIQ +TIPL+++  DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 106 FEKLDLPDSVIAAVKMVGFEQPSPIQAETIPLLMEGRDVVGLAQTGTGKTAAFALPVLSQ 165

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++    ++R P+ L+L PTRELA QVAD+F+ +  +   + V  + GG  +  Q   L R
Sbjct: 166 ID---PQLRHPQALVLAPTRELALQVADSFQSFADHLGKIQVLPIYGGQAYGIQLSGLRR 222

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  +G L ++N+  LV+DEAD ML+MGF   ++ I    P T+Q  
Sbjct: 223 GAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPNTKQVA 282

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++K+S+ +L +P  + V + + T   I   ++  +  +  K   + ++L+ 
Sbjct: 283 LFSATMPNGIRKISKQYLNDPAEVTVKSETRTNTNITQRYL--FTAHRNKLDAITRILEV 340

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  I+F   K     L   L  +GFS  AI+G+I Q+ R + +   ++G + ++VA
Sbjct: 341 TE-FEAMIVFVRTKHETEELAEKLRARGFSAAAINGDIAQQQRERTVDQLRDGRLDILVA 399

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HVFN+D+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 400 TDVAARGLDVERISHVFNYDIPNDIESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 459

Query: 362 KLIEKKVDWL 371
           ++    ++ +
Sbjct: 460 RVTNATIEEM 469


>gi|261401858|ref|ZP_05987983.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
           lactamica ATCC 23970]
 gi|269207983|gb|EEZ74438.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
           lactamica ATCC 23970]
          Length = 457

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 161/423 (38%), Positives = 254/423 (60%), Gaps = 21/423 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALALQGYETPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +K  LL++
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTFQKRNLLER 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416
           +AI++L   K+             +E+I+  +     +    P+K+   + R++N Y S 
Sbjct: 362 EAIKELTGNKL------------LIERIEGFEPRWWEQEGSKPEKTETSEPRQRNRYESA 409

Query: 417 KSH 419
           K+ 
Sbjct: 410 KAQ 412


>gi|170727862|ref|YP_001761888.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169813209|gb|ACA87793.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 413

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 166/426 (38%), Positives = 243/426 (57%), Gaps = 21/426 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ + LS +++  + +  Y +PT +Q + IP +L   D+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFSSMALSAELLNVLSELNYSEPTQVQAEAIPAILAGSDLMAGAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L + ++      +   R LIL PTRELA QV  +F +YG    L  A++ GG+  +AQ
Sbjct: 61  ERLSQLKSSQTSYELTPVRALILTPTRELALQVHQSFVRYGDGLTLKSAIVYGGVSIDAQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G D+LI TPGR+LDH  RG L +  +  LV DEADRMLDMGF   I  I   +P
Sbjct: 121 ADILKAGVDILIATPGRLLDHLRRGSLTLTQLAFLVFDEADRMLDMGFKDEIDAILKQLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT  D +  +S+  L++PK IEV   ++ A  +E    A  A   +K  LL
Sbjct: 181 KERQTLLFSATFDDGVFNLSKRLLKDPKLIEVGKRNAAAGKVEQRVYAVDA--DRKSELL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ S+   +  +IF  +K+    L   L  +G    A HG++ Q  R K+L  FK G 
Sbjct: 239 CHLILSK-KWRQVLIFSRKKQGADKLAAKLVNEGVKALAFHGDLSQSVREKVLQEFKSGE 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARGLD+  +  V N+++P  AE+Y+HRIGRTGRAG  G A TL  ++D  
Sbjct: 298 LQVLVATDVAARGLDVESLEVVVNYELPFVAEDYVHRIGRTGRAGNSGLAITLYCEDDAL 357

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            ++ +E +++ ++   WL G      P L K      +  RKN+   QK      R++  
Sbjct: 358 LLEEVEAVLDTRLPQQWLEG----FEPDLTK----SVSVTRKNSKSAQKQRA---RRRAT 406

Query: 414 SSQKSH 419
            S++S 
Sbjct: 407 GSKRSR 412


>gi|227514325|ref|ZP_03944374.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus fermentum
           ATCC 14931]
 gi|227087297|gb|EEI22609.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus fermentum
           ATCC 14931]
          Length = 495

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 151/384 (39%), Positives = 235/384 (61%), Gaps = 17/384 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGLS K++ A+  +GY + TPIQ +TIP+VL   DV G AQTGTGKTA+F LP +  
Sbjct: 6   FSELGLSNKLLKAIQRSGYEEATPIQEQTIPMVLAGKDVIGQAQTGTGKTAAFGLPTIEH 65

Query: 63  LEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++     V  P  + LI+ PTRELA Q  +   + GK   + V ++ GG     Q + LE
Sbjct: 66  VD-----VENPAIQALIISPTRELAIQTEEELFRLGKEKRVKVQVVYGGADIRRQIRSLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGR+ DH  RG + ++ ++ LV+DEAD ML+MGF+  I++I    P  RQT
Sbjct: 121 KNPQILVGTPGRLRDHLRRGTVDLSGVQTLVLDEADEMLNMGFLEDIEDIIKQTPSERQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++++   F+ +P+ +++     T + ++  +V   A+  +K  ++ +++ 
Sbjct: 181 LLFSATMPPEIKRIGVQFMHDPQTVKIKAKELTTDLVDQYYVR--AKDYEKFDIMTRMID 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     I+F   K+ V  L   L  +G++   IHG++ Q  R KI+  FKEG + ++V
Sbjct: 239 VQDPDLT-IVFGRTKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P+  ++Y+HRIGRTGRAG HG + T V   ++ ++  I
Sbjct: 298 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMNYLHEI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           EKL   +       +  L PP E+
Sbjct: 358 EKLTRAR-------MLPLKPPTEE 374


>gi|111023001|ref|YP_705973.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
 gi|110822531|gb|ABG97815.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
          Length = 586

 Score =  290 bits (741), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 151/361 (41%), Positives = 225/361 (62%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +  +V+ A+ D GY  P+PIQ  TIP +L  +DV G+AQTGTGKTA+F +P+L+ 
Sbjct: 13  FADLDIDDRVLKALSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPILSK 72

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   + P+ L+L PTRELA QVA+ F KY  +   L V  + GG  +  Q   L R
Sbjct: 73  IDLTQ---KSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGLRR 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  +G L ++ +  LV+DEAD ML MGF   ++ I +  P  +Q  
Sbjct: 130 GAHVVVGTPGRVIDHLEKGTLDLSKLSYLVLDEADEMLKMGFQEDVERILADTPEYKQVA 189

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K+S+ ++ +P  I + + +STA  I   +V    Q  +K   L ++L+ 
Sbjct: 190 LFSATMPGAIRKISKQYMHDPVEITMKSKTSTASNISQRYVQVAHQ--RKLDALTRVLEV 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D  +  IIF   K+   +L   L  +GFS  AI+G+I Q  R + +   K G + ++VA
Sbjct: 248 ED-FEAMIIFVRTKQATEDLAEKLRSRGFSASAINGDIVQAQRERTIGQLKSGALDILVA 306

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G+A   VA  +   + AIE
Sbjct: 307 TDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERHLLKAIE 366

Query: 362 K 362
           K
Sbjct: 367 K 367


>gi|21672635|ref|NP_660702.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25090073|sp|Q8K9H6|DEAD_BUCAP RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|21623269|gb|AAM67913.1| ATP-dependent RNA helicase DEAD [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 601

 Score =  290 bits (741), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 146/367 (39%), Positives = 232/367 (63%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL+P ++ ++   GYVKP+PIQ   IPL+L+  DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FSFLGLNPFIIKSLSKMGYVKPSPIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L      ++ P+ L+L PTRELA QVA+ F  + K    + V  L GG  +E Q + L +
Sbjct: 68  LN---INLKAPQILVLAPTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRYEVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I S +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLNLSNLYALVLDEADEMLRMGFIEDVETIMSQIPKEHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++S+ F++NP+ I++ +  +T   I+  +   +  Y +K   L + L+ 
Sbjct: 185 LFSATMPEAIRRISKRFMKNPQEIKIQSNITTRPDIKQSY---WMVYGRKTDALIRFLEV 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K G + +++A
Sbjct: 242 ED-FSATIIFVKTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKSGRLDILIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  IE
Sbjct: 301 TDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 360

Query: 362 KLIEKKV 368
           + I + +
Sbjct: 361 RTINQTI 367


>gi|319940808|ref|ZP_08015147.1| DNA/RNA helicase, superfamily II [Sutterella wadsworthensis
           3_1_45B]
 gi|319805690|gb|EFW02471.1| DNA/RNA helicase, superfamily II [Sutterella wadsworthensis
           3_1_45B]
          Length = 601

 Score =  290 bits (741), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 150/371 (40%), Positives = 227/371 (61%), Gaps = 7/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA+LGLSP++V ++   G+ +PTPIQ   IP +L   DV G A TGTGKTA+F LP++ 
Sbjct: 3   DFAELGLSPQLVSSLTALGFEEPTPIQEAAIPAILAGSDVLGQAATGTGKTAAFALPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
               G+     P  L+L PTREL  QV+++F  YG++  + V  + GG  +  Q + L+R
Sbjct: 63  RWALGK-EPSDPVILVLTPTRELCLQVSESFHSYGRDAGIIVTPIYGGQEYGRQIRSLKR 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR LDH NRG L ++ ++ +V+DEAD MLD+GF   +  I   +P   QT 
Sbjct: 122 GTHVVVATPGRALDHINRGTLKLDAVKAVVLDEADEMLDLGFADELDAIFEALPEGVQTA 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           LFSAT+   + K+++  L+NP RI +    TP   A  +    +A     + + A L ++
Sbjct: 182 LFSATLPPRIAKIADEHLKNPVRIAIAKEETPEGEAPRVPQ--IAYIVGRNYRTAALGRI 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +D  +  IIF   +  V  L  +L  +G+SV A+HG +DQ +R +++ N + G I  
Sbjct: 240 LDLEDP-ELAIIFARTRNEVDELTEALRVRGYSVEALHGGLDQPTRDRVMRNARSGKIDA 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ ++ HV NF +P   E Y+HRIGRTGRAGR G A T++   + +HI 
Sbjct: 299 IVATDVAARGIDLENLTHVINFGIPASYETYVHRIGRTGRAGRTGTAITILEPREHRHIR 358

Query: 359 AIEKLIEKKVD 369
           A+E+    K++
Sbjct: 359 ALERATRSKIE 369


>gi|134102495|ref|YP_001108156.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|291004114|ref|ZP_06562087.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915118|emb|CAM05231.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 578

 Score =  290 bits (741), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 151/371 (40%), Positives = 233/371 (62%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L P+V+  + + GY  P+PIQ +TIP +L+ HDV G+AQTGTGKTA+F LP+L+ 
Sbjct: 4   FDELDLDPRVLQVLSEIGYETPSPIQAQTIPPLLEGHDVMGLAQTGTGKTAAFALPILSR 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+      + P+ L+L PTRELA QVA+ F++Y  +     V  + GG  +  Q   L+R
Sbjct: 64  LD---LDAKTPQALVLAPTRELAIQVAEAFQRYAAHLPGFHVLPIYGGQSYGPQLAGLKR 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH N+G L +  ++ LV+DEAD ML MGFI  ++ I   VP  RQ  
Sbjct: 121 GAHVVVGTPGRVIDHLNKGSLDLTGLKNLVLDEADEMLRMGFIEDVETILQSVPEQRQVA 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  +++K+S+++L  P  I V T ++TA  I   ++        K   L ++L+ 
Sbjct: 181 LFSATMPPQIRKISQSYLNEPVEISVKTKTTTATNITQRYIPVRG--PAKLDALTRILEV 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T    I+F   K+    L   L+ +GFS  AI+G+I Q +R + + + +EG + ++VA
Sbjct: 239 E-TFDAMIVFVRTKQLTEELAEKLQARGFSAAAINGDIPQAARERTIGHLREGRVDILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P+ +E+Y+HRIGRTGRAGR G+A   V+  +   + +IE
Sbjct: 298 TDVAARGLDVERISHVLNYDIPHDSESYVHRIGRTGRAGRSGEAILFVSPRERHMLRSIE 357

Query: 362 KLIEKKVDWLN 372
           K   + +  + 
Sbjct: 358 KATRQSIGQME 368


>gi|90021156|ref|YP_526983.1| DNA topoisomerase III [Saccharophagus degradans 2-40]
 gi|89950756|gb|ABD80771.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 398

 Score =  290 bits (741), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 161/403 (39%), Positives = 239/403 (59%), Gaps = 7/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL   ++ A+ D GY  PT IQ + IP +L   DV   AQTGTGKTASFVLP+L
Sbjct: 1   MTFSTLGLCDPILQALNDVGYEAPTAIQEQAIPPILAGRDVLAKAQTGTGKTASFVLPIL 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            T  +K   R +  + LIL PTRELA QV DN   YG + +LT   ++GG+  E Q  KL
Sbjct: 61  QTFKDKANRRAKRIKALILVPTRELAIQVEDNIRLYGAHLSLTSMAMVGGVDIEPQKAKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR++D  ++  L  + +E LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 VEGVDILVATPGRLIDLMHQRALHFDELEFLVLDEADRMLDMGFIGDINKIIERLPERRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT++D+++ +++  + N   I +     +   I    V        K ALL  L+
Sbjct: 181 SLLFSATLSDKVRLLAKTAIVNAVEISIAADKKSTPPITQWLVTV--DKHNKSALLTHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++  K  +IF   K     L   LEK+G    +IH    Q  R ++L++FK G I  +
Sbjct: 239 -NENGWKQALIFIRTKHGAAKLVTQLEKRGIKAESIHSGRSQAVRTQLLADFKAGKIGFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI D+  V N+D+P+ A +Y+HRIGRTGRAG  G+A +L++ +D K + A
Sbjct: 298 VATGIAARGIDIDDLDRVVNYDLPDDAHDYVHRIGRTGRAGVSGEAVSLISMDDFKRLCA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           IE  +   +D    +++     ++++ I+  N+ +K+   PQ+
Sbjct: 358 IESRLGHIID--RKEVAEFK-AVKEVPISILNYVKKSAKKPQR 397


>gi|251780900|ref|ZP_04823820.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243085215|gb|EES51105.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 432

 Score =  290 bits (741), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 164/421 (38%), Positives = 249/421 (59%), Gaps = 15/421 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL +   +  A+ +AGY  PTPIQ ++IP +L+  D  G AQTGTGKTA+F +P+L
Sbjct: 1   MLFKDLNIIEPIQKALTEAGYTNPTPIQEQSIPSLLEGKDFLGCAQTGTGKTAAFAIPVL 60

Query: 61  TILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             + K + +    RT   LIL PTRELA Q+ +NF  Y K+ N+   ++ GG+  + Q +
Sbjct: 61  QNIAKNQNKSDKSRTIKALILAPTRELAIQIEENFTLYSKHTNIKNTVIFGGVSQKPQTR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+LI TPGR+LD  ++  + ++N++  V+DEADRM DMG +  ++ I + +P  
Sbjct: 121 ILGEGVDILIATPGRLLDLIDQKYIDLSNVKHFVLDEADRMFDMGMVRDVKKIVAKLPKV 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  E++ +  + L++P ++EV   SST +TI       +     K +LL  
Sbjct: 181 RQNLLFSATMPSEVKSLVNSILKDPVKVEVAPVSSTIDTITQGVY--FVTKKDKKSLLVH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ + ++K+ ++F   K    N+   L K G    AIHGN  Q +R   LSNFKEG I+
Sbjct: 239 LLKDE-SIKSLLVFSRTKYGANNIVKDLAKTGTESQAIHGNKSQNARQLALSNFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+  + HV N+D+P+  E Y+HRIGRTGRAG  G A +    ++   +
Sbjct: 298 VLVATDIAARGIDVDGLSHVINYDLPDVPETYVHRIGRTGRAGNSGVAISFCDVDEKSAL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-KKNYSSQ 416
             IEK I K +  +       N   E+I I +    RK     +K+T  +++ K+N+   
Sbjct: 358 KDIEKTIGKNIPVMK------NVEFERIAITREPAQRKE--ADKKTTDANKKPKRNWYGD 409

Query: 417 K 417
           K
Sbjct: 410 K 410


>gi|260903903|ref|ZP_05912225.1| DEAD/DEAH box helicase domain-containing protein [Brevibacterium
           linens BL2]
          Length = 606

 Score =  290 bits (741), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 154/371 (41%), Positives = 228/371 (61%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL P V+ AV   GY  PTPIQ +TIP +++  DV G+AQTGTGKTA+F LP L+ 
Sbjct: 15  FSELGLHPLVLQAVQAQGYETPTPIQAETIPALVEGRDVIGLAQTGTGKTAAFALPALSD 74

Query: 63  L-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
           L E GRA    P  L+L PTRELA QVA+ F  Y  N +  +V  + GG  +  Q   L+
Sbjct: 75  LAEAGRAN-DGPFALVLTPTRELAIQVAEAFTSYATNLDDFSVLPIYGGQAYGPQLSGLK 133

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  +G L + ++  L++DEAD ML MGF   I+ I S    +RQ 
Sbjct: 134 RGAQVVVGTPGRVIDHLKKGSLKLGSLRHLILDEADEMLKMGFAEDIEEIFSQSGDSRQV 193

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   + +++  +L NPK + V + S T   I   +     Q+S K   L ++L+
Sbjct: 194 ALFSATMPTSIHRLTGKYLNNPKEVRVASKSQTGSNIRQRY--HMVQHSHKLDALTRILE 251

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  I+F   K+    L   L  +GF   AI+G+I Q++R + +   + G + ++V
Sbjct: 252 VEE-YEGIIMFVRTKQATEELAEKLRARGFKASAINGDIPQQARERTIDMLRNGKVDILV 310

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V NFD+P+  E+Y+HRIGRTGRAGR G+A   V   + + + +I
Sbjct: 311 ATDVAARGLDVERITLVVNFDIPHDTESYVHRIGRTGRAGRSGEAILFVTPREQRLLGSI 370

Query: 361 EKLIEKKVDWL 371
           E+  ++KV+ L
Sbjct: 371 ERATKQKVEQL 381


>gi|32477297|ref|NP_870291.1| ATP-dependent RNA helicase rhlE [Rhodopirellula baltica SH 1]
 gi|32447848|emb|CAD77366.1| putative ATP-dependent RNA helicase rhlE [Rhodopirellula baltica SH
           1]
          Length = 485

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 157/386 (40%), Positives = 225/386 (58%), Gaps = 20/386 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL+  ++  +  AGY  PTPIQ ++IP +L  +DV G AQTGTGKTA+F LP+L I
Sbjct: 4   FEDLGLTGPLLQGLEQAGYETPTPIQAQSIPEILDGNDVLGAAQTGTGKTAAFALPILQI 63

Query: 63  LEKGRARVRMPR-------------TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
           + +     R P              TL+L PTREL+AQ+  NF  YGK   L   ++ GG
Sbjct: 64  MWEDDQERREPSKRRGGRPGRRPIRTLVLSPTRELSAQIEANFRIYGKKTRLRSTVIFGG 123

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +    Q ++L+ G D L+ TPGR+LD  N+G + + ++EILV+DEAD MLDMGF+P ++ 
Sbjct: 124 VNQNPQVRELQSGVDTLVATPGRLLDLVNQGFIDLKDVEILVLDEADHMLDMGFLPDVKR 183

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQ 227
           I   +P  RQ LLFSATM   ++K+++  L +P  I++     T E IE   CFVA    
Sbjct: 184 ILKFLPRDRQNLLFSATMPGPIRKLADEILVDPVTIQIAPQKPTVERIEQSICFVA---- 239

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
            + K  LL   ++++ T    ++F   K     +   L K G    AIHGN  Q +R++ 
Sbjct: 240 QADKPRLLNHFIETKATGST-LVFTRTKHGADAVARRLVKAGVKAAAIHGNKTQANRVRT 298

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L+ FK   + ++VA+D+AARG+DI  +  V N+D PN  E Y+HRIGRTGRAGR G+   
Sbjct: 299 LNKFKNDELDVLVATDVAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRAGREGETVM 358

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNG 373
                + K   AIE+ I+ ++    G
Sbjct: 359 FCGGHETKFFIAIEREIKLQIPVATG 384


>gi|296314358|ref|ZP_06864299.1| ATP-dependent RNA helicase RhlE [Neisseria polysaccharea ATCC
           43768]
 gi|296838913|gb|EFH22851.1| ATP-dependent RNA helicase RhlE [Neisseria polysaccharea ATCC
           43768]
          Length = 457

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 160/423 (37%), Positives = 254/423 (60%), Gaps = 21/423 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +K  LL++
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTIQKRNLLER 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+     +   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 243 LIVDLH-IPQVIVFCKTKQSVDQVTRDLIRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPTQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416
           +AI++L   K+             +E+I+  +     +    P+K+   + R++N Y S 
Sbjct: 362 EAIKELTGNKL------------LIERIEGFEPRWWEQEGSKPEKTETSEPRQRNRYESA 409

Query: 417 KSH 419
           K+ 
Sbjct: 410 KAQ 412


>gi|259501949|ref|ZP_05744851.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           antri DSM 16041]
 gi|259170126|gb|EEW54621.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           antri DSM 16041]
          Length = 512

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 145/363 (39%), Positives = 229/363 (63%), Gaps = 6/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F++LGLS  ++ A+  +GY + TPIQ +TIP+VL+  DV G AQTGTGKTA+F LP++
Sbjct: 15  LNFSELGLSQSLLKAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPII 74

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    LI+ PTREL  Q  +   + GK+ ++ V ++ GG     Q K L+
Sbjct: 75  EHVDTDNPNIQ---ALIISPTRELVIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLK 131

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+ DH NR  + + +I+ LV+DEAD ML+MGF+  I+ I    P  RQT
Sbjct: 132 HHPQILVGTPGRLRDHINRHTVKLGHIQTLVLDEADEMLNMGFLEDIEAIIKETPAERQT 191

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++++ E F+ +P+ + +     T + ++  +V   A+  +K  ++ +L+ 
Sbjct: 192 LLFSATMPPEIKRIGEQFMTDPETVRIKAKELTTDLVDQYYVR--ARDYEKFDIMTRLID 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     I+F   K+ V  L   L  +G++   IHG++ Q  R KI+  FK G + ++V
Sbjct: 250 VQDPDLT-IVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDRRTKIMKKFKHGDLDILV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P+  ++Y+HRIGRTGRAG HG + T V   +++++  I
Sbjct: 309 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGTSLTFVTPNEMEYLHEI 368

Query: 361 EKL 363
           EKL
Sbjct: 369 EKL 371


>gi|207725326|ref|YP_002255722.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
 gi|206590561|emb|CAQ37523.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
          Length = 633

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 153/388 (39%), Positives = 233/388 (60%), Gaps = 23/388 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL  ++V A+ +  Y  PTP+Q + IP  L   D+   +QTG+GKTA+F+LP +  
Sbjct: 64  FAALGLDERIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQR 123

Query: 63  L----EKGRARV---------RMPRT-------LILEPTRELAAQVADNFEKYGKNYNLT 102
           +    E  R RV         R PR        L+L PTRELA QV     +YG++    
Sbjct: 124 ISEQPEPQRPRVDGAPQRVKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRRI 183

Query: 103 V-ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
           V A ++GG+P+  Q   L R  D++I TPGR+LDH + G++ ++ +++LV DEADRMLDM
Sbjct: 184 VCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDM 243

Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
           GF   I+ I    P +RQ L+FSATM   +++++E  ++ P+RIE+         IE   
Sbjct: 244 GFADDIEAIVGATPESRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARVDQSNIEERL 303

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
             T    S K  LL  LL+   ++K  I+F   K++  +L   L + GF+  A+HG++ Q
Sbjct: 304 HFT-DDMSHKQQLLDHLLRDA-SLKQAIVFTATKRDADSLAERLTETGFAAGALHGDMHQ 361

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
            +R + L+  + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR
Sbjct: 362 GARNRTLTALRRGHLRILVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGR 421

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
            G A  LV   D      IE+ ++++++
Sbjct: 422 SGIAINLVNHGDTFQWRRIERFVDRRIN 449


>gi|78042906|ref|YP_359101.1| DEAD-box ATP dependent DNA helicase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995021|gb|ABB13920.1| ATP-dependent RNA helicase, DEAD box family [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 430

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 155/367 (42%), Positives = 227/367 (61%), Gaps = 7/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LGL   ++ AV D G+  PTPIQ + IPL+L+ H++ G A TGTGKTA+++LP+L 
Sbjct: 3   EFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++G+      + LI+ PTRELA QVAD   K GK   +    + GG   E Q + L +
Sbjct: 63  RIQRGKK----AQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQ 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G +V++ TPGRILDH  R       I+I+++DEAD MLDMGFI  I+ I + +   +QTL
Sbjct: 119 GVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTL 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ + + FL   K +++     T   I   +       ++K   L  +L S
Sbjct: 179 LFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYEL--PETEKIEGLVSILNS 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  ++  I+FC  KK V  +   L  +G++   +HG++ QR R + + +FK G  +L+VA
Sbjct: 237 ELPIQ-AIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVA 295

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIPDV HV NFD+P   E+YIHRIGRTGRAGR GKA TL+   + K + AIE
Sbjct: 296 TDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIE 355

Query: 362 KLIEKKV 368
           + I K++
Sbjct: 356 EAINKRL 362


>gi|312885453|ref|ZP_07745092.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311302033|gb|EFQ79063.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 450

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 147/371 (39%), Positives = 235/371 (63%), Gaps = 11/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D   + +++ A+ DAGY + TP+Q K IP ++   DV GIAQTGTGKTA+++LP++  
Sbjct: 5   FEDFNFNRQILNAIADAGYTEATPVQQKAIPPIMNGQDVMGIAQTGTGKTAAYMLPIIMR 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R +++ PTRELA Q+ +N +++ K  +L +  L GG+  + Q + +++G
Sbjct: 65  LK--YAQGSDARAIVIAPTRELALQIEENAKEFAKYTDLRIVSLYGGLGPKTQKELMDKG 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR +D +  G ++   +E+LV+DEAD+M+DMGF+P I  I  +VP  RQ LL
Sbjct: 123 VDIIVATPGRFMDVYLTGHMVTKKLEVLVLDEADKMMDMGFMPQINRILEVVPRKRQNLL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM+D++Q++S NFL+ P  +EV   ++ A+T+             K  LL++LL + 
Sbjct: 183 FSATMSDKIQELSSNFLEFPTVVEVTPQATPAQTVNQVLYHV-PNMKTKINLLKKLLDAP 241

Query: 243 DTMKNGIIFCNQKKNVVNLCHSL-----EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           D +K  IIFC  +    ++   L     EK+   V  +H N  Q +R+  ++ FK   ++
Sbjct: 242 DDIKKLIIFCKTRVAAEDVYKFLLRKFGEKE---VRVLHANKGQNTRINAINAFKNDEVK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A+RG+D+ DV HV NFDVP   E+Y+HRIGRTGRA + G+A T     +  +I
Sbjct: 299 ILVATDVASRGIDVSDVSHVINFDVPVVYEDYVHRIGRTGRAFQSGEAITFCNPAEEYYI 358

Query: 358 DAIEKLIEKKV 368
             IEKLI +++
Sbjct: 359 RKIEKLIRQQI 369


>gi|295394794|ref|ZP_06805009.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972390|gb|EFG48250.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 586

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 155/371 (41%), Positives = 226/371 (60%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L  +V  AV D GY  P+PIQ KTIP +LQ  DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 16  FSDFDLDERVARAVADLGYESPSPIQAKTIPFLLQGRDVIGLAQTGTGKTAAFALPLLSS 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +  GR R   P  LIL PTRELA QVA+    Y  +  + +V  + GG  +  Q   L+R
Sbjct: 76  I-AGRERPTSPLALILAPTRELAIQVAEALTSYATHLGDFSVLPIYGGQSYTPQISGLKR 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  RG L ++++E LV+DEAD ML MGF   I+ I +     RQ  
Sbjct: 135 GAHVVVGTPGRVIDHIKRGTLDLSHVEHLVLDEADEMLKMGFQEDIEEIFAKTNPDRQVA 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   + +++  +L +P  + +   ++T+  I   ++     +S K   L ++L+ 
Sbjct: 195 LFSATMPASIHRITGQYLNDPAEVRIQAKTTTSANIRQRYLTVM--HSHKLDALTRILEV 252

Query: 242 QDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +    +GII F   K+    L   L+ +GFS  AI+G+I Q  R + +   + G+I ++V
Sbjct: 253 EKY--DGIIMFVRTKQETEELADKLKARGFSAAAINGDIPQVVRERTVEALRSGSIDILV 310

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V NFD+P+  E+Y+HRIGRTGRAGR G+A   V   + + + AI
Sbjct: 311 ATDVAARGLDVERISLVVNFDIPHDTESYVHRIGRTGRAGRTGEAILFVTPRENRLLKAI 370

Query: 361 EKLIEKKVDWL 371
           EK   +KV+ L
Sbjct: 371 EKATRQKVEPL 381


>gi|254425384|ref|ZP_05039102.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
 gi|196192873|gb|EDX87837.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
          Length = 570

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 147/371 (39%), Positives = 225/371 (60%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P V+ A+ DAGY  PTPIQ  TIP +L   D+ G AQTGTGKTA+F LP+L+ 
Sbjct: 8   FQTLSLIPPVLKALEDAGYETPTPIQALTIPPILDGRDIIGQAQTGTGKTAAFALPILSQ 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++   +    P+ L+L PTRELA QVA+ F+ Y  +     V  + GG  +  Q K+L R
Sbjct: 68  IDISNSD---PQALVLAPTRELALQVAEAFQSYASHLKGFHVLPIYGGQSYHVQLKQLRR 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            A V++ TPGR++DH  RG L ++N++ LV+DEAD ML MGFI  ++ + S  P +RQ  
Sbjct: 125 AAHVIVGTPGRVIDHIKRGTLKLDNLKFLVLDEADEMLRMGFIEDVEWVISQTPQSRQVA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K+++ +L +P+ + V   S TA+TI   F      +  K   L ++L+ 
Sbjct: 185 LFSATMPAAIRKIAQKYLNSPQELAVKNQSKTADTIRQRFWPVSGYH--KLDALTRILEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I+F   K   V L   LE +G++   + G++ Q  R + +   ++G + ++VA
Sbjct: 243 ED-FDGMIVFVRTKVATVELSEKLEARGYNTAPLSGDVPQNQRERTVERLRQGKLDILVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 302 TDVAARGLDVERISHVINYDMPYDPEAYVHRIGRTGRAGREGEAILFVTPREKRLLSSIE 361

Query: 362 KLIEKKVDWLN 372
           +   ++++ + 
Sbjct: 362 RSTRQRIERME 372


>gi|145295298|ref|YP_001138119.1| hypothetical protein cgR_1238 [Corynebacterium glutamicum R]
 gi|140845218|dbj|BAF54217.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 729

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 150/361 (41%), Positives = 224/361 (62%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  +V+ AV   GY  P+PIQ +TIP++++  DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 104 FDALGLPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTGTGKTAAFALPILSR 163

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++K    VR P+ L+L PTRELA QVAD+F+ +  +   L V  + GG  +  Q   L R
Sbjct: 164 IDKS---VRSPQALVLAPTRELALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRR 220

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  +G L ++ +  LV+DEAD ML+MGF   ++ I    P  +Q  
Sbjct: 221 GAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVA 280

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++S+ +L NP  I V + + T   I   F+   A  +K  AL + L  +
Sbjct: 281 LFSATMPNGIRRLSKQYLNNPAEITVKSETRTNTNITQRFL-NVAHRNKMDALTRILEVT 339

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  I+F   K     +   L  +GFS  AI+G+I Q  R + +   K+G + ++VA
Sbjct: 340 E--FEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 397

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV NFD+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 398 TDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 457

Query: 362 K 362
           +
Sbjct: 458 R 458


>gi|116071349|ref|ZP_01468618.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
 gi|116066754|gb|EAU72511.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
          Length = 467

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 159/370 (42%), Positives = 231/370 (62%), Gaps = 14/370 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L L  + V ++ +AGY+ PTPIQ  TIP VLQ  D+   AQTGTGKTA+F+LP++
Sbjct: 33  LTFEQLNLCAETVRSIREAGYLSPTPIQTLTIPEVLQGKDIMASAQTGTGKTAAFILPII 92

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L  E    R+++  +LIL PTRELAAQV  N + Y K   +    + GG+    Q K+
Sbjct: 93  ELLRVEDKPKRLQV-HSLILTPTRELAAQVEANAKGYTKYLGIRSDAVFGGVSIRPQVKR 151

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+L+ TPGR+LD  N+  +  +N++ILV+DEADRMLDMGFI  I+ +   +P  R
Sbjct: 152 LQGGVDILVATPGRLLDLINQKTIRFDNLKILVLDEADRMLDMGFIRDIKKVIEFLPKKR 211

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT +  ++K++   L +P  I+ +  +  A TIEH  +      ++K  LL  L
Sbjct: 212 QNMMFSATFSAPIKKLALGLLNDPVEIKASVQNKAAPTIEH--LVHPCDMARKVDLLCHL 269

Query: 239 LQSQDTMKNGIIFCNQK----KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +++ +  K  ++F   K    K V  LCH    Q     AIHGN  Q +R + L  FK G
Sbjct: 270 IKTNE-WKQVLVFARTKHGADKVVKILCH----QHIKASAIHGNKSQGARTRALEGFKNG 324

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            ++++VA+D+AARG+DI  + +V N D+PN AE+Y+HRIGRTGRAG +G A +LVA E+ 
Sbjct: 325 DVKILVATDIAARGIDIHQLPYVINLDLPNVAEDYVHRIGRTGRAGENGHAISLVAAEEA 384

Query: 355 KHIDAIEKLI 364
             + AIEK I
Sbjct: 385 LLLKAIEKFI 394


>gi|284006674|emb|CBA71936.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase)
           [Arsenophonus nasoniae]
          Length = 615

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 237/369 (64%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 12  ISFADLGLSTPILSALNDLGYEKPSPIQQQCIPYLLDGCDVLGMAQTGSGKTAAFSLPLL 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             ++     ++ P+ L+L PTRELA QVA+   ++ K+  ++ V  L GG  +++Q + L
Sbjct: 72  HNID---ITLKAPQILVLAPTRELAVQVAEAMGEFSKHMRSVNVVALYGGQRYDSQLRAL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  +++ TPGR+LDH  RG L ++++  LV+DEAD ML MGFI  ++NI S +P   Q
Sbjct: 129 RQGPQIVVGTPGRLLDHLKRGTLNLSHLRGLVLDEADEMLRMGFIEDVENIMSQIPSEHQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+++PK I + +  +T   I   + + Y    +K   L + L
Sbjct: 189 TALFSATMPEAIRRITRRFMKSPKEISIQSSVTTRPDITQSYWSVYGM--RKNEALVRFL 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +++D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + ++
Sbjct: 247 EAED-FDAAIIFVRTKNATLEVAEALERSGYNSSALNGDMNQALREQTLERLKDGRLDIL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 306 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRAILFVDNRERRLLRN 365

Query: 360 IEKLIEKKV 368
           IE+ +++ +
Sbjct: 366 IERTMKQPI 374


>gi|16117825|dbj|BAB69820.1| putative ATP-dependent RNA helicase [Streptococcus sobrinus]
          Length = 522

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 146/371 (39%), Positives = 233/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  ++ AV  AG+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELHLAEDILQAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    L++ PTRELA Q  +   ++G+   + V  + GG   + Q K L 
Sbjct: 61  NKIDIDNNVIQ---ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIDKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N+IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISHVPDERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T++ +E  ++    +  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTSDNVEQFYI--RVKEREKFDTMTRLID 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +G+    IHG++DQ  R++++ +FK   + ++V
Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ GK+ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGKSVTFVSPNEMGYLSII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|86145735|ref|ZP_01064064.1| ATP-dependent RNA helicase [Vibrio sp. MED222]
 gi|218676917|ref|YP_002395736.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|85836434|gb|EAQ54563.1| ATP-dependent RNA helicase [Vibrio sp. MED222]
 gi|218325185|emb|CAV27095.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 399

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 155/373 (41%), Positives = 227/373 (60%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V AV   GY KPT IQ K IP+VL   ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSSPIVKAVAKQGYEKPTSIQEKAIPIVLSGKNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R +  R +IL PTRELA QV  N  KY K  NLT   + GG+ ++ Q  +L
Sbjct: 61  EMLSKGETQRKKRIRAVILTPTRELAIQVEQNITKYAKFLNLTSLAMYGGVSYQHQKDRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR++D + +  +  + +E+LV+DEADRMLDMGFI  I  I + +P   Q
Sbjct: 121 IEGVDILVATPGRLIDMYGQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIARLPQNIQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++  ++ ++++ +   + I +    ++   IE   V       +K ALL  ++
Sbjct: 181 NLLFSATLSTPVRALAKSAISEAEEISIAKTDASKANIEQWLVTV--DKDRKSALLSHMI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       +IF   K     L   LEK+G    A H    Q  R KIL++FK+G ++ +
Sbjct: 239 -TDGEWDQALIFIETKHGAAKLVAQLEKRGIEAEAFHSGRSQAIREKILADFKKGRLKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI ++  V N+D+P  A++Y+HRIGRTGRA   G+A + ++K++ K++  
Sbjct: 298 VATGVAARGIDIDNLSRVVNYDIPFPADDYVHRIGRTGRADASGEAISFLSKDNFKNLCI 357

Query: 360 IEK----LIEKKV 368
           IEK    LIE++V
Sbjct: 358 IEKRLGHLIERRV 370


>gi|260773840|ref|ZP_05882755.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260610801|gb|EEX36005.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 420

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 155/377 (41%), Positives = 228/377 (60%), Gaps = 9/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG++P +V ++   G   PT IQI+ IP VL  HDV   AQTGTGKTA+F LP+L  
Sbjct: 8   FLDLGIAPTLVESLNALGIETPTEIQIQAIPPVLAGHDVLAGAQTGTGKTAAFGLPLLQR 67

Query: 63  LEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L   +  V +     R L+L PTRELA QV D+   Y K   L V +  GG     Q + 
Sbjct: 68  LAASKTDVDVSSKDIRALVLVPTRELAQQVFDSLTAYAKGSELKVVVAYGGTSMSVQKQH 127

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  GADVLI TPGR+LDH +   L + N++ LV+DEADRMLDMGF+P IQ +   +   R
Sbjct: 128 LRGGADVLIATPGRLLDHAHVKSLYLGNVQTLVLDEADRMLDMGFMPDIQRVLRKLNRAR 187

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSAT   +++ ++   +  P  ++V   ++TA+T+            +K  LL  L
Sbjct: 188 QTLFFSATFDQKIKALAYRMMHEPIEVQVTPANTTADTVSQMVYPV--DKKRKSELLAYL 245

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S++  +  ++F   K+    L   L+  G    +I+G+  Q +R K L +FK G I+ 
Sbjct: 246 IGSRN-WQQVLVFTKTKQGSDALAQELKLDGIKAASINGDKSQGARQKALDDFKAGKIRA 304

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI  +  V NFD+P +AE+YIHRIGRTGRAG+ G A +L++ ++   + 
Sbjct: 305 LIATDVAARGIDICQLEQVVNFDLPYKAEDYIHRIGRTGRAGQSGLAVSLMSPQEEPLLQ 364

Query: 359 AIEKLIEKKV--DWLNG 373
           AIE+L+++++  +WL G
Sbjct: 365 AIERLLDQRLPQEWLKG 381


>gi|30018496|ref|NP_830127.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|29894036|gb|AAP07328.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
          Length = 514

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 153/364 (42%), Positives = 228/364 (62%), Gaps = 8/364 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  ++  +  V+    +++ 
Sbjct: 2   GFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ---GIVIA 58

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA QV +   K GK+  + +  + GG     Q + L++   +++ TPGRILDH NR
Sbjct: 59  PTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINR 118

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
             L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLLFSATM D +++++E F+
Sbjct: 119 KTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFM 178

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
             P+ I+V     T   I+  ++    Q  KK  +L +LL  Q + +  I+F   K+ V 
Sbjct: 179 TEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ-SPELAIVFGRTKRRVD 235

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA+D+AARGLDI  V HV+N
Sbjct: 236 ELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYN 295

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           FD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+  ++K+D +  D  +L+
Sbjct: 296 FDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRM--DAPTLD 353

Query: 380 PPLE 383
             LE
Sbjct: 354 EALE 357


>gi|297622829|ref|YP_003704263.1| DEAD/DEAH box helicase domain-containing protein [Truepera
           radiovictrix DSM 17093]
 gi|297164009|gb|ADI13720.1| DEAD/DEAH box helicase domain protein [Truepera radiovictrix DSM
           17093]
          Length = 442

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 149/365 (40%), Positives = 216/365 (59%), Gaps = 8/365 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L P++   +  AGY  PTPIQ   IP  L   D+ G+AQTGTGKTA+FVLP+L 
Sbjct: 7   SFHGFHLHPRLDQGLQAAGYTTPTPIQRAAIPAALAGRDLLGLAQTGTGKTAAFVLPLLH 66

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L  G R+ VR    L++ PTRELA Q+       G+   L  A + GG+    Q + L 
Sbjct: 67  RLMDGPRSCVR---ALVVAPTRELAEQIHGEIGVLGRATGLRSATVYGGVGMAPQARALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA++++  PGR+LDH  RG   +  +E+LV+DEAD M DMGF+P ++ +   VP   Q 
Sbjct: 124 GGAEIIVACPGRLLDHLERGTGTLAKLEVLVLDEADHMFDMGFLPAVRKLVGRVPEGAQR 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  EL++++E  L+ P  +++   +  A T+ H       +  +K ALL+ LL+
Sbjct: 184 LLFSATMPPELRRLAEALLRAPVTLQIGR-TEAAATVSHALYPVARE--QKTALLKHLLR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +++ ++F   K+    L  SLE+  F   ++ GN+ Q  R K L  F+ G + ++V
Sbjct: 241 HHD-IRSALVFTRTKRGAKRLAESLERDNFFATSLQGNLSQTKRQKALDAFRAGEVHVLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HVFN+DVP  AE Y HRIGRTGRA R G+A T V  +D   +  I
Sbjct: 300 ATDIAARGIDVARVSHVFNYDVPTTAEAYTHRIGRTGRAARTGEACTFVTPDDEGVVRQI 359

Query: 361 EKLIE 365
           E+ ++
Sbjct: 360 ERALK 364


>gi|269468408|gb|EEZ80073.1| hypothetical protein Sup05_1317 [uncultured SUP05 cluster
           bacterium]
          Length = 614

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 155/374 (41%), Positives = 232/374 (62%), Gaps = 14/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D GLS  ++  +   GY  P+PIQ + I  +L   D+ G AQTGTGKTA+F LP+L  
Sbjct: 14  FSDFGLSDSILKVLDSIGYETPSPIQEQCITHLLNGEDIIGQAQTGTGKTAAFALPLLDN 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     +  P+ LIL PTRELA QV++  + Y +      V  + GG  ++ Q + L+R
Sbjct: 74  ID---LSLNAPQLLILAPTRELAIQVSEAVQVYARGLKGFHVLPIYGGQSYDIQLRPLKR 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G   ++ TPGR++DH  +G L ++ ++  V+DEAD ML MGFI  I+ +   +P  RQ  
Sbjct: 131 GVHCVVGTPGRVMDHIKKGTLKLDQLKSFVLDEADEMLKMGFIDDIKWVMERIPEQRQIA 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLL 239
           LFSATM + +++V+E FL NPK ++V T + TA TI  ++C V   +Q   K   L ++L
Sbjct: 191 LFSATMPNIIKRVAEKFLNNPKIVKVKTKTETAPTIGQKYCLVGGLSQ---KLDALTRIL 247

Query: 240 QSQ--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +    D M   IIF   K   + L   L  +GFS  AI+G+I Q  R KI++ FK+G I 
Sbjct: 248 EVTEFDAM---IIFARTKTLTIELSEKLSARGFSAEAINGDIQQSQREKIINKFKKGGID 304

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+P + HV N+D+P  AE Y+HRIGRTGRAGR G+A   V+  + + +
Sbjct: 305 ILVATDVAARGLDVPRISHVVNYDIPQDAETYVHRIGRTGRAGREGEAILFVSHRERRML 364

Query: 358 DAIEKLIEKKVDWL 371
           + IE++  +K++ L
Sbjct: 365 NNIERVTRQKIEPL 378


>gi|325204407|gb|ADY99860.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240355]
          Length = 457

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 159/423 (37%), Positives = 254/423 (60%), Gaps = 21/423 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +K  LL++
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTFQKRNLLER 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416
           ++I++L   K+             +E+I+  +     +    P+K+   + R++N Y S 
Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKTETSEPRQRNRYESA 409

Query: 417 KSH 419
           ++ 
Sbjct: 410 RAQ 412


>gi|90418358|ref|ZP_01226270.1| putative RNA helicase, DEAD/DEAH box family [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90338030|gb|EAS51681.1| putative RNA helicase, DEAD/DEAH box family [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 455

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 160/388 (41%), Positives = 227/388 (58%), Gaps = 8/388 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF   GL+  ++ A+      +PTPIQ + IP V++  DV GIAQTGTGKTA+F LP++ 
Sbjct: 5   DFKAFGLADTLLSALARLDITQPTPIQAQAIPAVMKGRDVLGIAQTGTGKTAAFSLPVID 64

Query: 62  --ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I + GR   + P+ L+L PTRELA+Q+A N + Y     LT  ++ GG+    Q + +
Sbjct: 65  ALIAKGGRPAPKTPKVLVLTPTRELASQIAGNVKSYTAGTKLTHHVIFGGVSIRPQIEAM 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D++I TPGR+LD  N+  L ++ +  +V+DEADRMLDMGF+  +  I S +P  RQ
Sbjct: 125 RRGVDIVIATPGRLLDLLNQRALTLSEVHHVVLDEADRMLDMGFVKDVMRIVSQLPADRQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSATM   +++++   L NP R+EV     T E I    V    Q +KK  L++ L 
Sbjct: 185 SLLFSATMPRAMEELAAKILTNPVRVEVTPEVVTVEKINQS-VFLVPQKAKKLWLIEHL- 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  +IF   K     L   LEK G    AIHGN  Q +R K L  F+ GT+ ++
Sbjct: 243 -AKPDFEKTVIFTRTKHGANKLAADLEKAGIDARAIHGNKSQGARQKALGEFQTGTVSVL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARG+ + D+ HV NFD+P   E+Y+HRIGRT RAG+ G A  LV   +   +  
Sbjct: 302 VATDIVARGIHVDDISHVVNFDLPEEPESYVHRIGRTARAGKSGIAVALVDPSERSKLRQ 361

Query: 360 IEKLIEKKVDWLNGDLSS---LNPPLEK 384
           IE+L     D    D S+   LN P EK
Sbjct: 362 IERLTGLNFDLQQTDYSAHVDLNAPEEK 389


>gi|114775697|ref|ZP_01451265.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
           PV-1]
 gi|114553808|gb|EAU56189.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
           PV-1]
          Length = 628

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 152/373 (40%), Positives = 236/373 (63%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  V+ ++ D GY   TPIQ  TIPL+L+  DV G AQTGTGKTA+F LP+L++
Sbjct: 7   FNELGLSEPVLKSIKDQGYENATPIQAATIPLLLEGRDVLGQAQTGTGKTAAFALPLLSM 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ L+L PTRELA QVA+ F++Y  +     V  + GG  ++ Q ++L+R
Sbjct: 67  IDIDQ---RDPQVLVLAPTRELAIQVAEAFQQYAHHIKGFHVLPIYGGQSYDIQLRQLKR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  R  L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 124 GAHVVVGTPGRVMDHIRRKTLNLSGLKTLVLDEADEMLRMGFIDDVKWVLEQLPEQRQIA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K++++ L+NP+ + +   ++TA TI   F     +   K   L ++L+ 
Sbjct: 184 LFSATMPAVIRKIAQSHLKNPQHVTIKDKTTTAPTIRQRFWMVSGR--NKIDALTRILEF 241

Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   IIF   K     +   LE +G++  A++G++ Q  R +I++  K G I ++
Sbjct: 242 EPFDGM---IIFVRTKTATDEVAERLEARGYAASALNGDVKQSQREQIVNRLKSGKIDIV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   VA  + + + +
Sbjct: 299 VATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRKGDAILFVAPREKRMLYS 358

Query: 360 IEKLIEKKVDWLN 372
           IEK   ++V+ L 
Sbjct: 359 IEKATNQRVEQLE 371


>gi|157368742|ref|YP_001476731.1| ATP-dependent RNA helicase DeaD [Serratia proteamaculans 568]
 gi|157320506|gb|ABV39603.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
          Length = 653

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 143/364 (39%), Positives = 230/364 (63%), Gaps = 7/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 9   FADLGLSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHN 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L+   A ++ P+ L+L PTRELA QVA+    + K+ + + V  L GG  ++ Q + L +
Sbjct: 69  LD---ASLKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRALRQ 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 126 GPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQTA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +     Q  +K   L + L++
Sbjct: 186 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTV--QGMRKNEALVRFLEA 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G+S  A++G+++Q  R + L   K+G + +++A
Sbjct: 244 ED-FDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  IE
Sbjct: 303 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 362

Query: 362 KLIE 365
           + ++
Sbjct: 363 RTMK 366


>gi|85708371|ref|ZP_01039437.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
 gi|85689905|gb|EAQ29908.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
          Length = 484

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 153/376 (40%), Positives = 224/376 (59%), Gaps = 8/376 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGLS  V+ A+   GY  PTPIQ + IP VL+  D+ GIAQTGTGKTA+F+LP +  
Sbjct: 4   FSDLGLSQPVLQALDLKGYSTPTPIQEQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSIDR 63

Query: 63  LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L +   R+  +  R L+L PTREL +Q+A + + YG    L V  ++GG        KL 
Sbjct: 64  LREADNRIPFKSCRMLVLAPTRELVSQIAASAKDYGALAGLKVQSIVGGTSVNKDRNKLH 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+LI TPGR+LD  ++    + ++E+LV+DEAD+MLD+GF+  ++ I+ LVP  RQT
Sbjct: 124 RGTDILIATPGRLLDLIDQKAFNLGSVEVLVLDEADQMLDLGFVHALRRISQLVPKERQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   ++++   +  NP ++ V   S+TAE I+        Q  +K +LL+ +L 
Sbjct: 184 LFFSATMPKAIKELVSGYCNNPVQVSVTPESTTAERIDQYLF--MVQQDEKQSLLELILS 241

Query: 241 SQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +  +       +IF   K     +   L + G    AIHGN  Q  R + L  F+ G  
Sbjct: 242 GRHKVPGEFERILIFTRTKHGADRVVKKLSRAGIPANAIHGNKSQPQRQRALDEFRRGKT 301

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DIP V HV N+++PN  E Y+HRIGRT RAG+ G A    A+++  +
Sbjct: 302 MILVATDVAARGIDIPGVSHVLNYELPNVPEQYVHRIGRTARAGKDGVAIAFCAEDERAY 361

Query: 357 IDAIEKLIEKKVDWLN 372
           +  I K    ++D LN
Sbjct: 362 LKDIRKTTGAELDRLN 377


>gi|269968866|ref|ZP_06182847.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio
           alginolyticus 40B]
 gi|269826516|gb|EEZ80869.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio
           alginolyticus 40B]
          Length = 421

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 152/385 (39%), Positives = 239/385 (62%), Gaps = 6/385 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++FADLG+  K++  + +   V PTP+Q K+IP VL   ++   AQTGTGKTA+F LP++
Sbjct: 7   VNFADLGIEQKLIETLGNLNIVTPTPVQEKSIPHVLAGKNLLAAAQTGTGKTAAFGLPII 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++ +     P+ LIL PTRELA QV DN  +Y     L +  + GG     Q +KLE
Sbjct: 67  QTVQQKKLN-GTPQALILVPTRELAQQVFDNLNQYSAETELRIVCVYGGTSIGVQKRKLE 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+LI TPGR+LDH   G + ++   +LV+DEADRMLDMGF P +Q I   +P  +Q 
Sbjct: 126 EGADILIATPGRLLDHLFNGNVNISKTGMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQI 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    ++ ++   +++P  +EV+  ++TAET+            +K  LL  L+ 
Sbjct: 186 LLFSATFEKRIKTIAYKLMESPVEVEVSPANTTAETVTQMVYPV--DKKRKRELLAYLIG 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++  +  ++F   K+    L   L+  G    +I+G+  Q +R + L  FK+G ++ ++
Sbjct: 244 SRN-WQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALI 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++   + AI
Sbjct: 303 ATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLQAI 362

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLE 383
           E L+++++  +WL G   SL   +E
Sbjct: 363 ENLLDQRLPQEWLAGFEPSLVEEVE 387


>gi|183600372|ref|ZP_02961865.1| hypothetical protein PROSTU_03938 [Providencia stuartii ATCC 25827]
 gi|188020163|gb|EDU58203.1| hypothetical protein PROSTU_03938 [Providencia stuartii ATCC 25827]
          Length = 622

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 144/366 (39%), Positives = 232/366 (63%), Gaps = 7/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGLS  ++ A+ D GY KP+PIQ + IPL++  +DV G+AQTG+GKTA+F LP+L
Sbjct: 7   ISFADLGLSASILTALNDLGYEKPSPIQKQCIPLLMDGNDVLGMAQTGSGKTAAFSLPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++     ++ P+ L+L PTRELA QVA+    + K+ + + V  L GG  ++ Q + L
Sbjct: 67  HNIDPD---LKAPQILVLAPTRELAVQVAEAMGDFSKHMSRVNVVALYGGQRYDVQLRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  V++ TPGR+LDH  RG L ++ ++ LV+DEAD ML MGFI  ++NI S +P   Q
Sbjct: 124 RQGPQVVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F++ PK I +    +T   I   +   Y    +K   L + L
Sbjct: 184 TALFSATMPEPIRRITRRFMKEPKEIRIQASITTRPDIAQSYWTVYGM--RKNEALVRFL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +++D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + ++
Sbjct: 242 EAED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 301 IATDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 360

Query: 360 IEKLIE 365
           +E+ ++
Sbjct: 361 VERTMK 366


>gi|330830109|ref|YP_004393061.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565]
 gi|328805245|gb|AEB50444.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii
           B565]
          Length = 431

 Score =  289 bits (740), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 153/370 (41%), Positives = 230/370 (62%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P+++ AV D GY + TP+Q + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFDFAPEILRAVSDCGYQEMTPVQQQAIPAIRRGRDVLASAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L    A V+    R LIL PTRELAAQVA N   + K  ++T   ++GG   + Q KK
Sbjct: 61  QRLVDNPAPVQPSNARVLILTPTRELAAQVASNINDFAKYLDITTITIVGGGKQDVQAKK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ GA +++ TPGR+L+H     L ++ +E LV+DEADR+LDMGF   +Q I   V  TR
Sbjct: 121 LKAGAHIIVATPGRLLEHLTACNLSLSGVECLVMDEADRILDMGFSADVQKILQAVNKTR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +D ++K++   L  P+ + VN  +STA+T+ H       +  +K  LL +L
Sbjct: 181 QNLLFSATFSDAVKKLANLMLDRPQIVSVNKQNSTADTVSHTVYPV--EQKRKRELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  Q+  +  ++F + +++   L   L   G     +HG   Q +R + L  F EG +++
Sbjct: 239 IGKQN-WQQVLVFASTRESCDVLVEELNLDGIKSAVVHGEKAQGNRRRALREFMEGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDIPD+ +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIPDLEYVVNYDLPFLAEDYVHRIGRTGRAGKRGMAISFVSREEERTLL 357

Query: 359 AIEKLIEKKV 368
            IE LI +K+
Sbjct: 358 EIEALIGQKI 367


>gi|217976993|ref|YP_002361140.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
 gi|217502369|gb|ACK49778.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
          Length = 448

 Score =  289 bits (740), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 154/353 (43%), Positives = 213/353 (60%), Gaps = 19/353 (5%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE-------KGRARVRM 72
           GY KPTPIQ + IP VL   D+ GIAQTGTGKTA+F LP+L  L        +G ARV  
Sbjct: 21  GYTKPTPIQAQAIPHVLTGRDLVGIAQTGTGKTAAFALPILHQLAANPQQPPRGGARV-- 78

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
              L+L PTRELA+Q+A++F   G    L+VA++ GG+P  AQ + L+RG DVL+ TPGR
Sbjct: 79  ---LVLSPTRELASQIAESFRSLGSEMQLSVAVVFGGVPHGAQIRALQRGLDVLVATPGR 135

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           ++DH + G   +   E  V+DE D+MLD+GF+  I  I   +P  RQ L FSATM  E+ 
Sbjct: 136 LVDHLDSGVAHLGKTEFFVLDEVDQMLDLGFVKAIHRIVKTLPQRRQNLFFSATMPTEIA 195

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQLLQSQDTMKNGII 250
           K++ + L+NP ++ V   + TA+ +E    FV T+    +K  +L  LL +   M   II
Sbjct: 196 KLAADLLKNPAQVSVTPVAKTADRVEQQVLFVETH----RKRDILVDLL-ADAKMARTII 250

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F   K+    +   LE  G S  AIHGN  Q  R + L++F+ G ++ +VA+D+AARG+D
Sbjct: 251 FTRTKRGADKVAQHLEVCGVSAAAIHGNKSQSQRERSLASFRAGRVRALVATDIAARGID 310

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +  V HV NFD+P   E Y+HRIGRT RAG  G A +L    +   +  IE+L
Sbjct: 311 VDGVTHVVNFDLPEVPEAYVHRIGRTARAGAEGVAISLCDGAERDLLRNIERL 363


>gi|123440819|ref|YP_001004810.1| ATP-dependent RNA helicase DeaD [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087780|emb|CAL10566.1| cold-shock dead-box protein A [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 657

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 142/367 (38%), Positives = 232/367 (63%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  ++ A+ D GY KP+PIQ++ IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 9   FADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHN 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++     ++ P+ L+L PTRELA QVA+    + K+ N + V  L GG  ++ Q + L +
Sbjct: 69  IDPS---LKAPQVLVLAPTRELAIQVAEALSSFSKHMNGVNVVALYGGQRYDVQLRALRQ 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + +P   QT 
Sbjct: 126 GPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPAEHQTA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +        +K   L + L++
Sbjct: 186 LFSATMPEAIRRITRRFMKEPQEVRIQSSMTTRPDISQSYWVVDG--VRKNDALVRFLEA 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q +R + L   K G + +++A
Sbjct: 244 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQAAREQTLERLKNGRLDILIA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V + + + +  IE
Sbjct: 303 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVDRRERRLLQNIE 362

Query: 362 KLIEKKV 368
           + ++  +
Sbjct: 363 RTMKMTI 369


>gi|84385236|ref|ZP_00988268.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
 gi|84379833|gb|EAP96684.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
          Length = 399

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 155/373 (41%), Positives = 227/373 (60%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V AV   GY KPT IQ K IP+VL   ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSSPIVKAVAKQGYEKPTSIQEKAIPIVLSGKNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R +  R +IL PTRELA QV  N  KY K  NLT   + GG+ ++ Q  +L
Sbjct: 61  EMLSKGETQRKKRIRAVILTPTRELAIQVEQNITKYAKFLNLTSLAMYGGVSYQHQKDRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR++D + +  +  + +E+LV+DEADRMLDMGFI  I  I + +P   Q
Sbjct: 121 IEGVDILVATPGRLIDMYGQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIARLPQNIQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++  ++ ++++ +   + I +    ++   IE   V       +K ALL  ++
Sbjct: 181 NLLFSATLSTPVRALAKSAISEAEEISIAKTDASKANIEQWLVTV--DKDRKSALLSHMI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       +IF   K     L   LEK+G    A H    Q  R KIL++FK+G ++ +
Sbjct: 239 -TDGEWDQALIFIETKHGAAKLVAQLEKRGIQAEAFHSGRSQAIREKILADFKKGRLKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI ++  V N+D+P  A++Y+HRIGRTGRA   G+A + ++K++ K++  
Sbjct: 298 VATGVAARGIDIDNLSRVVNYDIPFPADDYVHRIGRTGRADASGEAISFLSKDNFKNLCI 357

Query: 360 IEK----LIEKKV 368
           IEK    LIE++V
Sbjct: 358 IEKRLGHLIERRV 370


>gi|224370609|ref|YP_002604773.1| DeaD [Desulfobacterium autotrophicum HRM2]
 gi|223693326|gb|ACN16609.1| DeaD [Desulfobacterium autotrophicum HRM2]
          Length = 616

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 153/373 (41%), Positives = 232/373 (62%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+++GL   V+ A+ D GY  PT IQ +TIP +L   D+ G AQTGTGKTA+F LP+L+ 
Sbjct: 21  FSEMGLIKPVLKALDDLGYETPTTIQAETIPYILAGRDLLGQAQTGTGKTAAFALPLLSR 80

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG---KNYNLTVALLIGGIPFEAQNKKL 119
           ++    +++ P+ L+L PTRELA QVA++F+ Y    K +N  V  + GG  +  Q  +L
Sbjct: 81  ID---IKLKKPQVLVLAPTRELAIQVAESFKGYAARIKGFN--VLPVYGGQAYAGQLNQL 135

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGR++D   RG L +  I  LVIDEAD ML MGFI  ++ I    P  RQ
Sbjct: 136 KRGVHVIVGTPGRLMDLMKRGVLDLTQIMTLVIDEADEMLRMGFIDDVEWILEQTPPGRQ 195

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   ++K++  +L +PK + +   ++TA+TI   F      +  K   L ++L
Sbjct: 196 VALFSATMPAPIKKIAIKYLTDPKDVFIRLRTATADTIRQRFWMVKGTH--KLDALTRIL 253

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +++ T    I+F   K   V L   LE +G++  A++G+I Q++R + +  FK+G I ++
Sbjct: 254 EAE-TFDAIIVFVRTKTATVELAEKLEARGYAAVALNGDIAQKARERTIDRFKKGKIDIL 312

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  V HV N+D+PN AE+Y+HRIGRTGRAGR G A   V+  +   +  
Sbjct: 313 VATDVAARGLDVERVSHVINYDIPNGAESYVHRIGRTGRAGRAGDAILFVSPRERWMLKV 372

Query: 360 IEKLIEKKVDWLN 372
           IEK   ++++ + 
Sbjct: 373 IEKTTRQQIEMMK 385


>gi|257790938|ref|YP_003181544.1| DEAD/DEAH box helicase domain-containing protein [Eggerthella lenta
           DSM 2243]
 gi|257474835|gb|ACV55155.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
          Length = 414

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 160/419 (38%), Positives = 244/419 (58%), Gaps = 20/419 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS   + AV   G+  PTP+Q + IPLVL+  DV   A TGTGKTA+F LP+   
Sbjct: 5   FQDLGLSETTLSAVERMGFTAPTPVQEQAIPLVLEGRDVVAAATTGTGKTAAFALPLFER 64

Query: 63  LEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  GRA R   PR L++ PTREL  Q+     +  K  N  +  ++GG  ++ Q  KL+R
Sbjct: 65  I--GRAKRPGSPRALVVSPTRELTQQIDAACTQLAKASNRRMLTVMGGTKYKGQIAKLDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVL+ TPGR+ D   RG + + ++E+LV+DEADRMLDMGF P ++ + +  P +RQTL
Sbjct: 123 GIDVLVATPGRLYDLMERGVVKLRDVEVLVLDEADRMLDMGFWPTMKKVVAATPSSRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ +   + L++P  +EV+    TA+TI+   +       KK ALL+ +LQ 
Sbjct: 183 LFSATLDRKVMQSVSSILKDPAFVEVSHKGETADTIDQFMIPVGPM--KKPALLRLVLQQ 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + + K  I+F + K         L++ GF   +IH +  Q  R + L  F +G I ++VA
Sbjct: 241 RGS-KRVIVFADTKTRAEICTGQLKRAGFRADSIHSDKTQVQRKRALEGFSKGAIDVLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+ ++ +V N+D+P   E+Y+HRIGRTGRAG  G A + V+ E    +  IE
Sbjct: 300 TDVLARGIDVSNIEYVVNYDLPESPEDYVHRIGRTGRAGETGYAISFVSPEAKAQLLDIE 359

Query: 362 KLIEKKVDWLNGD----------LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           KL+ +++  L+ D          L+S   P   +  A  + + + N     ++GF RR+
Sbjct: 360 KLLGERIPTLDIDGYDATEAEKALASQFVPKATVGSAAFSRSLRRN----GASGFGRRR 414


>gi|126739425|ref|ZP_01755118.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. SK209-2-6]
 gi|126719525|gb|EBA16234.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. SK209-2-6]
          Length = 468

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 149/374 (39%), Positives = 236/374 (63%), Gaps = 5/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ +GL   ++  + + G   PTPIQ + IP  L   DV G+AQTGTGKTA+F +P+++
Sbjct: 28  EFSSMGLPKHILTRLANMGLKDPTPIQARAIPHALNGEDVLGLAQTGTGKTAAFGVPLIS 87

Query: 62  -ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L+ GR    +  R L+L PTRELA Q+A+  +   +   + V L++GG+    Q  ++
Sbjct: 88  RMLDYGRKPAGKTVRGLVLAPTRELANQIAETLKALTEGTPMKVGLVVGGVSINPQISRI 147

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD  +R  L + + + LV+DEAD+MLD+GFI  ++ I++L+P  RQ
Sbjct: 148 ARGTDILVATPGRLLDILDRDALDLGSCDFLVLDEADQMLDLGFIHALRKISALLPEERQ 207

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  ++ +++ ++L+ P RIEV  P   A  +    V   A+  K   L + L 
Sbjct: 208 TMLFSATMPKQMNEIANSYLKRPVRIEVTPPGKPAAKVTQS-VHFIAKAEKLSLLKELLA 266

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +D  +  ++F   K  +  L   LEK GF+  AIHGN  Q  R + L+ FK G I+++
Sbjct: 267 NHKD--ERTLVFGRTKYGMEKLMRVLEKAGFAAAAIHGNKSQGQRERALAAFKSGEIKVL 324

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIPDV  V+N+++PN  + Y+HRIGRT RAG+ G+A    A ++++ + A
Sbjct: 325 VATDVAARGLDIPDVKFVYNYELPNVPDAYVHRIGRTARAGKDGEAVAFCAPDEMEELKA 384

Query: 360 IEKLIEKKVDWLNG 373
           I+K+++  +   +G
Sbjct: 385 IQKVMKITIPTASG 398


>gi|325134358|gb|EGC57003.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M13399]
 gi|325144657|gb|EGC66955.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240013]
 gi|325205823|gb|ADZ01276.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M04-240196]
          Length = 457

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 159/423 (37%), Positives = 254/423 (60%), Gaps = 21/423 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +K  LL++
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTIQKRNLLER 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416
           ++I++L   K+             +E+I+  +     +    P+K+   + R++N Y S 
Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKTEMREPRQRNRYESA 409

Query: 417 KSH 419
           ++ 
Sbjct: 410 RAQ 412


>gi|254443756|ref|ZP_05057232.1| DbpA RNA binding domain family [Verrucomicrobiae bacterium DG1235]
 gi|198258064|gb|EDY82372.1| DbpA RNA binding domain family [Verrucomicrobiae bacterium DG1235]
          Length = 603

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 154/363 (42%), Positives = 217/363 (59%), Gaps = 12/363 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL LS  V  A+++ GY  P+PIQ + IP+VL   D+ G AQTGTGKTA+F LP+L++
Sbjct: 14  FADLSLSQPVQDALVEIGYETPSPIQARAIPVVLSGRDLIGQAQTGTGKTAAFALPLLSM 73

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
           L   E G      P+ +IL PTRELA QV++    YG+    L V  + GG  F  Q + 
Sbjct: 74  LDPNEDG------PKAIILAPTRELALQVSEAISNYGRKVKRLEVTAIYGGTDFTRQFRA 127

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+R   +++ TPGRI+DH  RG L ++ I  +V+DEAD ML MGFI  ++ I    P  R
Sbjct: 128 LDRKPAIVVGTPGRIMDHIRRGSLDLSRISHVVLDEADEMLRMGFIEDVEWILEHTPSER 187

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT LFSATM   +  +++  L+ P  + +   ++T  T+   F+        K  +L  L
Sbjct: 188 QTALFSATMPPRIAAIAKKQLKEPVTVAIKNTTATVSTVRQRFIKCNG-MRHKIEVLGNL 246

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L++++     I+F   K     +   L   G +V AIHG+I Q  R K +S  KEG I +
Sbjct: 247 LETEER-DAAIVFTRTKSAASMIAEELAASGHAVEAIHGDITQNKREKAVSLLKEGKIDI 305

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  + HVFNFD+P+ AE YIHRIGR GRAGR G+A  L+ + D + + 
Sbjct: 306 LVATDVAARGLDVDRISHVFNFDIPDDAEPYIHRIGRAGRAGRSGEAILLLTRRDFRKLR 365

Query: 359 AIE 361
            IE
Sbjct: 366 DIE 368


>gi|145298647|ref|YP_001141488.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851419|gb|ABO89740.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 431

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 155/370 (41%), Positives = 230/370 (62%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P+++ AV D GY + TP+Q + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFDFAPEILRAVSDCGYQEMTPVQRQAIPTIRRGLDVLASAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L    A ++    R LIL PTRELAAQVA N   + K  ++TV  L+GG   + Q KK
Sbjct: 61  QRLVDKPAELQPSNARVLILTPTRELAAQVASNINDFAKYLDVTVLTLVGGGKQDVQAKK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ GA +++ TPGR+L+H     L ++ +E LV+DEADR+LDMGF   +Q I   V   R
Sbjct: 121 LKAGAHIIVATPGRLLEHLTACNLSLSGVECLVLDEADRILDMGFSADVQQILQAVNKER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +D ++K++   L  P+ I VN  +STA+T+ H       +  +K  LL +L
Sbjct: 181 QNLLFSATFSDGVKKLANVMLDKPQIISVNKQNSTADTVTHTVYPV--EQKRKRELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  Q+     ++F + +++   L   L   G     +HG+  Q SR + L  F EG +++
Sbjct: 239 IGKQN-WPQVLVFASTRESCDELVAELNLDGIKSAVVHGDKAQGSRRRALREFTEGKLRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDIPD+ +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIPDLQYVVNYDLPFLAEDYVHRIGRTGRAGKSGMAISFVSREEERTLL 357

Query: 359 AIEKLIEKKV 368
            IE LI +K+
Sbjct: 358 EIEALIGQKI 367


>gi|73748116|ref|YP_307355.1| ATP-dependent RNA helicase, DEAD [Dehalococcoides sp. CBDB1]
 gi|147668820|ref|YP_001213638.1| DEAD/DEAH box helicase domain-containing protein [Dehalococcoides
           sp. BAV1]
 gi|289432193|ref|YP_003462066.1| DEAD/DEAH box helicase [Dehalococcoides sp. GT]
 gi|73659832|emb|CAI82439.1| ATP-dependent RNA helicase, DEAD [Dehalococcoides sp. CBDB1]
 gi|146269768|gb|ABQ16760.1| DEAD/DEAH box helicase domain protein [Dehalococcoides sp. BAV1]
 gi|288945913|gb|ADC73610.1| DEAD/DEAH box helicase domain protein [Dehalococcoides sp. GT]
          Length = 561

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 150/375 (40%), Positives = 223/375 (59%), Gaps = 8/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F      P V+  V   GY +PTPIQ + IP ++  HDV G+AQTGTGKTA++ LP++
Sbjct: 1   MSFESFNFDPAVMAGVRACGYKEPTPIQAQAIPPIMAGHDVIGLAQTGTGKTAAYALPII 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L   R RVR   TL++ PTRELA Q++D+F   G+   +    + GG+  + Q ++L
Sbjct: 61  QKMLSTPRGRVR---TLVIAPTRELACQISDSFRSLGQRARIRECSIYGGVNMDQQIRRL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DV++  PGR+LDH  RG + +  +E L+IDEADRM DMGF P IQ+I   +    Q
Sbjct: 118 RSGVDVVVACPGRLLDHIWRGTIDVCGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E++K++     NP  ++V T S  +            +  +K  LL ++L
Sbjct: 178 TLLFSATMPPEVRKLTLETQTNPVTVQVGTQSPVSSVSH---SVYPVKSHQKTPLLLEIL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++ +T K+ +IF   K    NL   + K GF+  ++ GN+ Q  R  ++  F+ G  +++
Sbjct: 235 KTVET-KSVLIFARTKYGAENLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRGNFKIL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + HV N+D+P+  E+Y HRIGRTGR  R G+AF+LV   D   +  
Sbjct: 294 VATDIAARGLDIDHISHVINYDMPDSPEDYTHRIGRTGRFDRTGQAFSLVTGRDGDMVRD 353

Query: 360 IEKLIEKKVDWLNGD 374
           I++L+   +  L  D
Sbjct: 354 IQRLLSSPIQRLRVD 368


>gi|322389137|ref|ZP_08062700.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           903]
 gi|321144179|gb|EFX39594.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           903]
          Length = 523

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 235/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS +++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK      + + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIDVDNTVIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +++IE L++DEAD ML+MGF+  I+ I S VP TRQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHIETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + ++++   F++ P+ +++     T + ++  ++    +  +K   + +L+ 
Sbjct: 178 LLFSATMPEAIKRIGVQFMKEPEHVKIAAKELTTDLVDQYYI--RVKEGEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKTGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  +
Sbjct: 355 ENLTKKRMKGM 365


>gi|332160085|ref|YP_004296662.1| ATP-dependent RNA helicase DeaD [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|33332423|gb|AAQ11420.1| DeaD box RNA helicase [Yersinia enterocolitica]
 gi|318607355|emb|CBY28853.1| cold-shock DEAD-box protein A [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664315|gb|ADZ40959.1| ATP-dependent RNA helicase DeaD [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862020|emb|CBX72187.1| cold-shock DEAD box protein A [Yersinia enterocolitica W22703]
          Length = 657

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 142/367 (38%), Positives = 232/367 (63%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  ++ A+ D GY KP+PIQ++ IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 9   FADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHN 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++     ++ P+ L+L PTRELA QVA+    + K+ N + V  L GG  ++ Q + L +
Sbjct: 69  IDPS---LKAPQVLVLAPTRELAIQVAEALSSFSKHMNGVNVVALYGGQRYDVQLRALRQ 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + +P   QT 
Sbjct: 126 GPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPAEHQTA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +        +K   L + L++
Sbjct: 186 LFSATMPEAIRRITRRFMKEPQEVRIQSSMTTRPDISQSYWVVDG--VRKNDALVRFLEA 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q +R + L   K G + +++A
Sbjct: 244 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQAAREQTLERLKNGRLDILIA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V + + + +  IE
Sbjct: 303 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVDRRERRLLQNIE 362

Query: 362 KLIEKKV 368
           + ++  +
Sbjct: 363 RTMKMTI 369


>gi|320355280|ref|YP_004196619.1| DEAD/DEAH box helicase domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320123782|gb|ADW19328.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 552

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 144/351 (41%), Positives = 224/351 (63%), Gaps = 6/351 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  GL P +V  V + G+  PTPIQ   IPL+L+  D+ G AQTGTGKTA+F LP+L  
Sbjct: 6   FARFGLHPDLVQTVTELGFTDPTPIQQAAIPLLLEGRDLIGQAQTGTGKTAAFGLPLL-- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            ++   R +  + L+L PTRELA QVA+  ++YG+   +TV  + GG  ++ Q + L +G
Sbjct: 64  -QRITPRQQGVQALVLAPTRELAIQVAEAIQRYGQQRGITVLAVYGGQAYQQQIRSLRQG 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +V++ TPGR+LD  N+G L +  +  +V+DEAD ML MGF+  I+ I   +P  RQT+L
Sbjct: 123 VEVIVGTPGRLLDLMNQGTLDLTTVRTVVLDEADEMLSMGFVEDIELILDRIPAERQTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++  +  +S  +L++P+ + +     T  TIE  +     Q   K A L +L +  
Sbjct: 183 FSATISKRVLGLSARYLRDPETVSITPKQLTGATIEQRYYLVNQQ--DKVAALTRLFE-M 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T+ + +IF   +     L + L  +GF   A++G++ Q +R+++L+ F+ G ++++VA+
Sbjct: 240 ETIDSALIFTRTRIGTGELANQLTSRGFPAEALNGDLSQDARIQVLNRFRNGQVKVLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           D+AARGLDI D+ HVFNFD+P+  E Y+HR+GRTGRAGR G A +L+  +D
Sbjct: 300 DVAARGLDIDDISHVFNFDLPDDPEVYVHRVGRTGRAGREGIAISLLTPKD 350


>gi|62261419|gb|AAX77988.1| unknown protein [synthetic construct]
          Length = 604

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 147/363 (40%), Positives = 228/363 (62%), Gaps = 5/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGL+  +V  V+  GY  PTPIQ   IP +L   DV G AQTGTGKTA+F LP++ 
Sbjct: 34  DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 93

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++   +R R P+ L+L PTRELA QVA+ FE + KN  NL VA + GG  + +Q + L+
Sbjct: 94  NMDLA-SRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 152

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ T GR++DH  +G L ++N+  LV+DEAD ML MGFI  ++ + S V    Q 
Sbjct: 153 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQCQR 212

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++  + E +L+NP +I+V   + TA T+   F+       +K   L +LL+
Sbjct: 213 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKG--FRKIDALDRLLE 270

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++T    IIF   K + + +  +L+  G+ V AI+G++ Q  R  I+  F+     ++V
Sbjct: 271 TEET-DGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 329

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+  + HV N+D+PN  + Y+HRIGRTGRAGR G + +LV  ++++ +  +
Sbjct: 330 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 389

Query: 361 EKL 363
           E+ 
Sbjct: 390 ERF 392


>gi|24372961|ref|NP_717003.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24347107|gb|AAN54448.1|AE015582_2 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 433

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 153/370 (41%), Positives = 227/370 (61%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F      P+++ A+ D GY K TPIQ + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  T-ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             ++E     ++   R LIL PTRELAAQVA+N E Y K  N +V  + GG+  E Q +K
Sbjct: 61  QKMVENPSETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RGAD+++ TPGR+L+H     L +++++ LV+DEADRMLDMGF   IQ I   V   R
Sbjct: 121 LKRGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  ++K++   +  P+ I  +  ++TA+T+    V    +  +K  LL +L
Sbjct: 181 QNLLFSATFSSAVKKLANEMMIKPQVISADKQNTTADTVSQ--VVYPVEQRRKRELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F   +     L   L   G     +HG   Q SR + L  F  G +++
Sbjct: 239 I-GKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDIP + +V NFD+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLA 357

Query: 359 AIEKLIEKKV 368
            IEKLI +K+
Sbjct: 358 DIEKLIGQKI 367


>gi|86138673|ref|ZP_01057246.1| putative ATP-dependent RNA helicase protein [Roseobacter sp.
           MED193]
 gi|85824733|gb|EAQ44935.1| putative ATP-dependent RNA helicase protein [Roseobacter sp.
           MED193]
          Length = 431

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 149/370 (40%), Positives = 234/370 (63%), Gaps = 5/370 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILE 64
           +GL  +V+  + D G   PTPIQ + IP  L   DV G+AQTGTGKTA+F +P+++ +L+
Sbjct: 1   MGLPDQVLARLADMGLKDPTPIQARAIPHALNGEDVLGLAQTGTGKTAAFGVPLISRMLD 60

Query: 65  KGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            GR       R L+L PTRELA Q+A   +   +   + + L++GG+    Q +++ RG 
Sbjct: 61  YGRKPAAHTVRGLVLAPTRELANQIAATLKALTEGTPMKIGLVVGGVSINPQIQRISRGT 120

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
           D+L+ TPGR+LD  +R  L + + + LV+DEAD+MLD+GFI  ++ I+SL+P  RQT+LF
Sbjct: 121 DILVATPGRLLDILDRNALDLGSCDFLVLDEADQMLDLGFIHALRKISSLLPEERQTMLF 180

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM  ++ +++ ++L  P RIEV  P   A  +    V   A+  K   L + L + +D
Sbjct: 181 SATMPKQMNEIANSYLNRPVRIEVTPPGKPAAKVTQS-VHFIAKAEKLSLLKELLTEHKD 239

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +  ++F   K  +  L   LEK GF+  AIHGN  Q  R + L+ FK G I+++VA+D
Sbjct: 240 --ERTLVFGRTKHGMEKLMKVLEKSGFAAAAIHGNKSQGQRERALAAFKSGQIKVLVATD 297

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARGLDIPDV +V+N+++PN  + Y+HRIGRT RAG+ G+A    + ++++ + AI+K+
Sbjct: 298 VAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCSPDEMEELKAIQKV 357

Query: 364 IEKKVDWLNG 373
           ++  +   +G
Sbjct: 358 MKITIPTASG 367


>gi|317047409|ref|YP_004115057.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp.
           At-9b]
 gi|316949026|gb|ADU68501.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
          Length = 451

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 162/371 (43%), Positives = 239/371 (64%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVAEQGYREPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLL 60

Query: 61  TIL--EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L  +   AR R P R LIL PTRELAAQV +N  +Y +  NL   ++ GG+    Q  
Sbjct: 61  QRLSAKDAPARGRRPVRALILTPTRELAAQVGENVREYSQYLNLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++++EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLAHQNAVDLSHVEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++E  L NP+++EV   ++ +E +       +    +K  LL  
Sbjct: 181 RQNLLFSATFSDEIKSLAEKLLNNPEQVEVARRNTASEQVSQQV--HFVDKKRKRELL-S 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+  +D  +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK G I+
Sbjct: 238 LMIGRDNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKSGGIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN AE+Y+HRIGRTGRA   G A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGAALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKV 368
             IE+L+++++
Sbjct: 358 RDIERLLKREI 368


>gi|253686992|ref|YP_003016182.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753570|gb|ACT11646.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 625

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 146/377 (38%), Positives = 238/377 (63%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLNTSILNALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   +  ++ P+ L+L PTRELA QVA+    + K+ + + V  L GG  ++ Q + L +
Sbjct: 68  L---KPELKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + +P   QT 
Sbjct: 125 GAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F+++P+ + + +  +T   I   +     Q  +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTV--QGMRKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   +   +++++
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|83745783|ref|ZP_00942840.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
 gi|207743697|ref|YP_002260089.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
 gi|83727473|gb|EAP74594.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
 gi|206595096|emb|CAQ62023.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
          Length = 631

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 153/388 (39%), Positives = 233/388 (60%), Gaps = 23/388 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL  ++V A+ +  Y  PTP+Q + IP  L   D+   +QTG+GKTA+F+LP +  
Sbjct: 64  FAALGLDERIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQR 123

Query: 63  L----EKGRARV---------RMPRT-------LILEPTRELAAQVADNFEKYGKNYNLT 102
           +    E  R RV         R PR        L+L PTRELA QV     +YG++    
Sbjct: 124 ISEQPEPQRPRVDGAPQRVKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRRI 183

Query: 103 V-ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
           V A ++GG+P+  Q   L R  D++I TPGR+LDH + G++ ++ +++LV DEADRMLDM
Sbjct: 184 VCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDM 243

Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
           GF   I+ I    P +RQ L+FSATM   +++++E  ++ P+RIE+         IE   
Sbjct: 244 GFADDIEAIVGATPESRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARVDQSNIEERL 303

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
             T    S K  LL  LL+   ++K  I+F   K++  +L   L + GF+  A+HG++ Q
Sbjct: 304 HFT-DDMSHKQQLLDHLLRDA-SLKQAIVFTATKRDADSLAERLTETGFAAGALHGDMHQ 361

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
            +R + L+  + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR
Sbjct: 362 GARNRTLTALRRGHLRILVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGR 421

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
            G A  LV   D      IE+ ++++++
Sbjct: 422 SGIAINLVNHGDTFQWRRIERFVDRRIN 449


>gi|300812076|ref|ZP_07092524.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300496915|gb|EFK31989.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 481

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 149/385 (38%), Positives = 235/385 (61%), Gaps = 15/385 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+  ++ A+  +G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFTELGLNDNILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  +    + + +++EPTRELA Q  +   + G++ N  V ++ GG     Q + L+
Sbjct: 61  QKLDLDKQEQAI-QAIVIEPTRELAIQTQEELFRLGRDENAKVQVVYGGADIGRQIRALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  ++L+ TPGR+LDH  R  + ++ ++ +V+DEAD MLDMGFI  I++I +      QT
Sbjct: 120 KAPEILVGTPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQQL 238
           LLFSATM   +Q + E F+ +P+ +++     TA+ I+  FV      ++   C L+   
Sbjct: 180 LLFSATMPKPIQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLID-- 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +++ D     ++F   K+ V  L   L  +G++   IHG++ Q  RM++L  FKEG + +
Sbjct: 238 VENPDL---AVVFGRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDI 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG+ G + T V   +I ++ 
Sbjct: 295 LVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGMSVTFVTPNEIGYMR 354

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLE 383
            IE L +KK       +S L PP +
Sbjct: 355 TIEDLTKKK-------MSPLRPPTD 372


>gi|327541188|gb|EGF27732.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
           baltica WH47]
          Length = 556

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 157/386 (40%), Positives = 225/386 (58%), Gaps = 20/386 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL+  ++  +  AGY  PTPIQ ++IP +L  +DV G AQTGTGKTA+F LP+L I
Sbjct: 75  FEDLGLTGPLLQGLEQAGYETPTPIQAQSIPEILDGNDVLGAAQTGTGKTAAFALPILQI 134

Query: 63  LEKGRARVRMPR-------------TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
           + +     R P              TL+L PTREL+AQ+  NF  YGK   L   ++ GG
Sbjct: 135 MWEDDQERREPSKRRGGRPGRRPIRTLVLSPTRELSAQIEANFRIYGKKTRLRSTVIFGG 194

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +    Q ++L+ G D L+ TPGR+LD  N+G + + ++EILV+DEAD MLDMGF+P ++ 
Sbjct: 195 VNQNPQVRELQSGVDTLVATPGRLLDLVNQGFIDLKDVEILVLDEADHMLDMGFLPDVKR 254

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQ 227
           I   +P  RQ LLFSATM   ++K+++  L +P  I++     T E IE   CFVA    
Sbjct: 255 ILKFLPRDRQNLLFSATMPGPIRKLADEILVDPVTIQIAPQKPTVERIEQSICFVA---- 310

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
            + K  LL   ++++ T    ++F   K     +   L K G    AIHGN  Q +R++ 
Sbjct: 311 QADKPRLLNHFIETKATGST-LVFTRTKHGADAVARRLVKAGVKAAAIHGNKTQANRVRT 369

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L+ FK   + ++VA+D+AARG+DI  +  V N+D PN  E Y+HRIGRTGRAGR G+   
Sbjct: 370 LNKFKNDELDVLVATDVAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRAGREGETVM 429

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNG 373
                + K   AIE+ I+ ++    G
Sbjct: 430 FCGGHETKFFIAIEREIKLQIPVATG 455


>gi|262403813|ref|ZP_06080371.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
 gi|262350317|gb|EEY99452.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
          Length = 421

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 160/420 (38%), Positives = 245/420 (58%), Gaps = 23/420 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+ LGL P ++  + D G V PTPIQ + IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 8   FSQLGLDPHLLNTLSDLGIVNPTPIQQQAIPYVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67

Query: 62  ILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +E+   R    +  R L+L PTRELA QV D+ + Y K   L +  + GG   + Q   
Sbjct: 68  FIEQPWVREENSKEIRALVLVPTRELAQQVLDSMQAYAKGTELKIVAVYGGTSMKVQLNH 127

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+LI TPGR+LDH +   L +  +E+LV+DEADRMLDMGF+P +Q +   +   R
Sbjct: 128 LRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLR 187

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSAT   +++ V+   +++P  ++V   +STAET++           +K  LL  L
Sbjct: 188 QTLFFSATFDSKIKAVAYRIMRDPAEVQVTPSNSTAETVQQMVYPV--DKKRKRELLSYL 245

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S++  +  ++F   ++    L   L+  G    +I+G+  Q +R K L +FK G ++ 
Sbjct: 246 IGSKN-WQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRA 304

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLDI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L++ ++   ++
Sbjct: 305 LIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLVGLAVSLLSHDETPQLE 364

Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           AIE+L+  ++  +WL G      P  E          R+ N  P++S+G    K+   +Q
Sbjct: 365 AIERLLNTRLPQEWLKG----FEPSPE---------VREENS-PRRSSGRSAEKRKMKAQ 410


>gi|114771133|ref|ZP_01448573.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium
           HTCC2255]
 gi|114548415|gb|EAU51301.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium
           HTCC2255]
          Length = 531

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 157/369 (42%), Positives = 223/369 (60%), Gaps = 13/369 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+ LGL  ++V A+   GY  PTPIQ + IP VL   D+ G+AQTGTGKTA+F LP++  
Sbjct: 105 FSKLGLDAEIVKALGFLGYTLPTPIQSQAIPAVLNSKDLVGLAQTGTGKTAAFALPLIQQ 164

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                I  KGR+     R +IL PTRELA Q+ + F  +GK   L     IGG P   Q 
Sbjct: 165 LLMNPIAIKGRS----ARAIILSPTRELALQIHEAFVSFGKRLPLNFTHAIGGAPIRKQM 220

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L +G D+L+ TPGR+ D  ++  L ++  + LV+DEAD+MLD+GF+P ++ I S V  
Sbjct: 221 RDLSKGVDILVATPGRLEDLVDQKGLRLDETKFLVLDEADQMLDIGFLPAVKRIISKVNK 280

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSATM+ E++K++E +L +P ++ V   +ST + IE   +    Q   K   LQ
Sbjct: 281 DRQTLLFSATMSKEIKKLTETYLTDPVQVSVTPENSTVDKIEQSLMHLSKQ--NKGLALQ 338

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +++ S +  K  I+F   K     L   L  Q     AIHGN  Q  R + L +FK+G  
Sbjct: 339 RII-SANPKKRVIVFSRTKHGSDKLVKWLGTQNIGADAIHGNKSQGQRQRALDDFKKGKT 397

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARG+DIP +  V NFD+PN  E+Y+HRIGRT RAG  GKA    A ++ K 
Sbjct: 398 YILIATDIAARGIDIPGIEIVINFDLPNVPESYVHRIGRTARAGADGKAIAFCAPDEHKQ 457

Query: 357 IDAIEKLIE 365
           +  IEK+I+
Sbjct: 458 LWDIEKVIK 466


>gi|260777929|ref|ZP_05886822.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605942|gb|EEX32227.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 398

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 155/372 (41%), Positives = 221/372 (59%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  A+   GY KPT IQ K IP+VL+  D+   AQTGTGKTASFVLPML
Sbjct: 1   MPFSKLGLSQPITDAIQQLGYDKPTTIQTKAIPVVLRGEDLIAAAQTGTGKTASFVLPML 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G   R +  R LIL PTRELA QV +    YG++  LT   + GG+  +AQ + L
Sbjct: 61  EKLSQGETQRKKRIRGLILTPTRELAVQVEEKIRDYGQHLALTSLAMYGGVDEQAQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR++D + +  +    +E+LV+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IEGVDILVATPGRLIDMYGKRAVHFEEVEMLVLDEADRMLDMGFIDDINKILDRLPTDIQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++++++ +++  + +P  I +    ++ + IE   +       KK ALL  L+
Sbjct: 181 HLLFSATLSNKVRDLAKTAVHDPYEISIAANQASKKNIEQWLITV--DKDKKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D     +IF   K     L   LEK+G    A H    Q  R K+L +FK G IQ M
Sbjct: 239 KEND-WDQALIFIETKHGAAKLAQQLEKRGIEAEAFHSGRSQAVRSKLLEDFKAGKIQYM 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ + ARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 IATGVGARGIDIEGLTRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFKNLCM 357

Query: 360 IEK----LIEKK 367
           IE     LIE++
Sbjct: 358 IESRLGHLIERR 369


>gi|19552380|ref|NP_600382.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|21323923|dbj|BAB98549.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
           ATCC 13032]
          Length = 732

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 150/361 (41%), Positives = 223/361 (61%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  +V+ AV   GY  P+PIQ +TIP++++  DV G+AQTGTGKTA+F LP+L  
Sbjct: 104 FDALGLPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTGTGKTAAFALPILAR 163

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++K    VR P+ L+L PTRELA QVAD+F+ +  +   L V  + GG  +  Q   L R
Sbjct: 164 IDKS---VRSPQALVLAPTRELALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRR 220

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  +G L ++ +  LV+DEAD ML+MGF   ++ I    P  +Q  
Sbjct: 221 GAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVA 280

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++S+ +L NP  I V + + T   I   F+   A  +K  AL + L  +
Sbjct: 281 LFSATMPNGIRRLSKQYLNNPAEITVKSETRTNTNITQRFL-NVAHRNKMDALTRILEVT 339

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  I+F   K     +   L  +GFS  AI+G+I Q  R + +   K+G + ++VA
Sbjct: 340 E--FEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 397

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV NFD+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 398 TDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 457

Query: 362 K 362
           +
Sbjct: 458 R 458


>gi|325132396|gb|EGC55089.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M6190]
 gi|325138385|gb|EGC60953.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           ES14902]
 gi|325142616|gb|EGC65008.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           961-5945]
 gi|325201879|gb|ADY97333.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240149]
 gi|325208368|gb|ADZ03820.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           NZ-05/33]
          Length = 457

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 159/423 (37%), Positives = 254/423 (60%), Gaps = 21/423 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +K  LL++
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTIQKRNLLER 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416
           ++I++L   K+             +E+I+  +     +    P+K+   + R++N Y S 
Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKTEMREPRQRNRYESA 409

Query: 417 KSH 419
           ++ 
Sbjct: 410 RAQ 412


>gi|311071129|ref|YP_003976052.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
 gi|310871646|gb|ADP35121.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
          Length = 497

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 151/369 (40%), Positives = 229/369 (62%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS  ++ A+   G+ + TPIQ +TIPL LQ  DV G AQTGTGKTA+F +P++  
Sbjct: 5   FQDFQLSSDLMKAINRLGFEEATPIQAETIPLGLQHKDVIGQAQTGTGKTAAFGIPLVEK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +      ++    +++ PTRELA QV++   K G++    V  + GG     Q + L++ 
Sbjct: 65  INPESPNIQ---AIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKN 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH NR  L +NN+  +V+DEAD ML+MGFI  I++I S VP   QTLL
Sbjct: 122 PHIIVGTPGRLLDHINRRTLRLNNVNTVVMDEADEMLNMGFIEDIESILSNVPSEHQTLL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +++++E F+ NP+ ++V     T   I+  ++  + +  KK   L +LL  Q
Sbjct: 182 FSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHER--KKFDTLTRLLDIQ 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM  L  FK+G I+++VA+
Sbjct: 240 -SPELAIVFGRTKRRVDELSEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVAT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFDVP   E+Y+HRIGRTGRAG+ G A T +   +   + AIE+
Sbjct: 299 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQ 358

Query: 363 LIEKKVDWL 371
             ++K+D +
Sbjct: 359 TTKRKMDRM 367


>gi|182678749|ref|YP_001832895.1| DEAD/DEAH box helicase domain-containing protein [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182634632|gb|ACB95406.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 479

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 152/389 (39%), Positives = 231/389 (59%), Gaps = 22/389 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGL+  ++  +   G+ +PTPIQ + IP +L+  D+ GIAQTGTGKTA+F LP+L 
Sbjct: 3   DFRGLGLASSLLDTLAKQGFTRPTPIQAQAIPAILEGRDLIGIAQTGTGKTAAFALPILH 62

Query: 62  IL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            L        +G ARV     L+L PTRELA+Q+A+ F   G+++ L+VA++ GG+   A
Sbjct: 63  ALITHPTPAPRGGARV-----LVLSPTRELASQIAETFRTLGQSHALSVAVVFGGVSPGA 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q K L+RG D+L+ TPGR++DH + G   +   E  V+DE D+MLD+GF+  I+ I   +
Sbjct: 118 QIKALQRGLDILVATPGRLVDHIDSGVAHLGKTEFFVLDEVDQMLDLGFVKPIRRIVGTL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ+L FSATM  E++K++ + L++P  + V   + TA+ +    V  + +  +K  +
Sbjct: 178 PAKRQSLFFSATMPGEIRKLATDLLKDPVTVSVTPVAKTADRVRQQVV--FVETHRKRDI 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L +L      M   I+F   K+    +   LEK G    AIHGN  Q  R + L  F+ G
Sbjct: 236 LIELF-GDAMMTRTIVFTRTKRGADKVTQHLEKAGIPAFAIHGNKSQSQRERSLLAFRSG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            ++ +VA+D+AARG+DI  V HV N+++P   E+Y+HRIGRT RAG  G A +L    + 
Sbjct: 295 HVRALVATDIAARGIDIDGVTHVVNYELPEVPESYVHRIGRTARAGAEGIAISLCDGTER 354

Query: 355 KHIDAIEKLI-------EKKVDWLNGDLS 376
            ++  IEKL        +++    NG++S
Sbjct: 355 DYLRNIEKLTRLNLPVEDRRSSLQNGEIS 383


>gi|153809380|ref|ZP_01962048.1| hypothetical protein BACCAC_03694 [Bacteroides caccae ATCC 43185]
 gi|149127966|gb|EDM19188.1| hypothetical protein BACCAC_03694 [Bacteroides caccae ATCC 43185]
          Length = 375

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 153/375 (40%), Positives = 230/375 (61%), Gaps = 6/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F +L ++  ++ A+ + GY  PTPIQ K IP  L + D+ G AQTGTGKTASF +P+ 
Sbjct: 1   MTFKELNITEPILKAIKEKGYTVPTPIQEKAIPAALAKRDILGCAQTGTGKTASFAIPII 60

Query: 60  --LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L ++ K   + +  + LIL PTRELA Q+++  + Y K   +   ++ GG+    Q  
Sbjct: 61  QHLQVVSKESVKRQGIKALILTPTRELALQISECIDDYSKYTRVRHGVIFGGVNQRPQVD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +G D+L+ TPGR+LD  N+G + ++ I+  V+DEADRMLDMGFI  I+ I   +P  
Sbjct: 121 MLRKGIDILVATPGRLLDLMNQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTL FSATM D +  ++++ L+NP +I +   SST ++I    V  + +  +K  LL  
Sbjct: 181 KQTLFFSATMPDTIVTLTKSLLKNPVKIYITPKSSTVDSINQ--VVYFVEKKEKSQLLIS 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +LQ  +  ++ +IF   K N   +   L K G    AIHGN  Q +R   L NFK G  +
Sbjct: 239 ILQKAED-QSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MVA+D+A+RG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A T  ++E+ K +
Sbjct: 298 VMVATDIASRGIDISELPMVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQEERKLV 357

Query: 358 DAIEKLIEKKVDWLN 372
           + I+KL  KK++  N
Sbjct: 358 NDIQKLTGKKLNKAN 372


>gi|254457027|ref|ZP_05070455.1| dead/deah box helicase [Campylobacterales bacterium GD 1]
 gi|207085819|gb|EDZ63103.1| dead/deah box helicase [Campylobacterales bacterium GD 1]
          Length = 431

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 158/369 (42%), Positives = 234/369 (63%), Gaps = 5/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   ++ A+ + GY  PT IQ + IPLVL + D+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFEKLGLIKPLLGAIKELGYEHPTLIQKRAIPLVLAKSDIFATAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L    A   R  R +IL PTREL+ Q+ ++ + Y K+ +LT A+L+GG   EAQ + L
Sbjct: 61  QKLRNTTADENRTIRAVILSPTRELSIQIHEDVKNYSKHMSLTSAILVGGKDIEAQQRML 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D++I TPGR ++  ++G L + NIE+ V+DEADRMLDMGF   I+ I   +P   Q
Sbjct: 121 KTGIDIVIGTPGRFMELMDKG-LDITNIEVFVVDEADRMLDMGFSKEIRRIHLQLPRRHQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT +D+++K+S+  L  P  IE    ++T +TI    VA      +K  LL  L+
Sbjct: 180 TLLFSATYSDKVRKLSKQILTKPAFIETAKKNTTVDTINQ--VAYMVDTDRKAELLAYLI 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S++     ++F   K +   L   L+K G     IHG+  Q +R K L+ FKEG I+++
Sbjct: 238 GSRN-FPQVLVFTKTKVSADALFIELKKDGLKCGIIHGDKTQANRQKTLTQFKEGQIRVL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI ++ +V N+++P+  E+Y+HR+GRTGRAGR G+A +L+   D  +I  
Sbjct: 297 VATDIASRGLDIEELPYVINYELPSIPEDYVHRVGRTGRAGRDGQAISLLDVYDKYNIKD 356

Query: 360 IEKLIEKKV 368
           +E+LI +K+
Sbjct: 357 VERLIGQKI 365


>gi|328676775|gb|AEB27645.1| Cold-shock DEAD-box protein A [Francisella cf. novicida Fx1]
          Length = 569

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 147/363 (40%), Positives = 229/363 (63%), Gaps = 5/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGL+  +V  V+  GY  PTPIQ   IP +L   DV G AQTGTGKTA+F LP++ 
Sbjct: 8   DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++  ++R R P+ L+L PTRELA QVA+ FE + KN  NL VA + GG  + +Q + L+
Sbjct: 68  NIDL-KSRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ T GR++DH  +G L ++N+  LV+DEAD ML MGFI  ++ + S V    Q 
Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSDECQR 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++  + E +L+NP +I+V   + TA T+   F+       +K   L +LL+
Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKG--FRKIDALDRLLE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++T    IIF   K + + +  +L+  G+ V AI+G++ Q  R  I+  F+     ++V
Sbjct: 245 TEET-DGVIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+  + HV N+D+PN  + Y+HRIGRTGRAGR G + +LV  ++++ +  +
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363

Query: 361 EKL 363
           E+ 
Sbjct: 364 ERF 366


>gi|160883549|ref|ZP_02064552.1| hypothetical protein BACOVA_01521 [Bacteroides ovatus ATCC 8483]
 gi|237722794|ref|ZP_04553275.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|293371813|ref|ZP_06618223.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CMC 3f]
 gi|299147643|ref|ZP_07040707.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_23]
 gi|156110962|gb|EDO12707.1| hypothetical protein BACOVA_01521 [Bacteroides ovatus ATCC 8483]
 gi|229447316|gb|EEO53107.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292633265|gb|EFF51836.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CMC 3f]
 gi|298514430|gb|EFI38315.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_23]
          Length = 374

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 154/371 (41%), Positives = 228/371 (61%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L ++  ++ A+ + GY  PTPIQ + IP  L + D+ G AQTGTGKTASF +P++
Sbjct: 1   MTFKELNITEPILKAIEEKGYAVPTPIQGEAIPAALAKRDILGCAQTGTGKTASFAIPII 60

Query: 61  TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L+  K  A+ R  + LIL PTRELA Q+++    Y K   +   ++ GG+    Q   
Sbjct: 61  QHLQMNKEAAKCRGIKALILTPTRELALQISECINDYAKYTQVRHGVIFGGVNQRPQVDM 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD  N+G + ++ I+  V+DEADRMLDMGFI  I+ I   +P  +
Sbjct: 121 LHKGIDILVATPGRLLDLMNQGHIHLDKIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM D +  ++ + L+NP RI +   SST + IE   +  + +  +K  LL  +
Sbjct: 181 QTLFFSATMPDTIISLTNSLLKNPVRISITPKSSTVDAIEQ--MVYFVEKKEKSLLLVSI 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ  +  ++ ++F   K N   +   L K G    AIHGN  Q +R   L NFK G  ++
Sbjct: 239 LQKSED-QSVLVFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQLALGNFKSGKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A T  ++E+ K ++
Sbjct: 298 MVATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQEERKLVN 357

Query: 359 AIEKLIEKKVD 369
            I+KL  KK++
Sbjct: 358 DIQKLTGKKLN 368


>gi|113868657|ref|YP_727146.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
 gi|113527433|emb|CAJ93778.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
          Length = 646

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 153/386 (39%), Positives = 231/386 (59%), Gaps = 21/386 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   ++ A+ +  Y  PTP+Q + IP  L   D+   +QTG+GKTA+F+LP +  
Sbjct: 60  FATLGLDAAILRALSELNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQR 119

Query: 63  LEK-----------GRARVRMPRT-------LILEPTRELAAQVADNFEKYGKNYNLTV- 103
           + +            R + + PR        L+L PTRELA QV +   KYG+N    V 
Sbjct: 120 ISEMPAPQRATEPAKRMKGKRPRPSPAQPALLVLTPTRELALQVTEAAAKYGRNLRRIVC 179

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163
           A ++GG+P+  Q   L +  D+L+ TPGR+LDH + G++ ++ +++LV DEADRMLDMGF
Sbjct: 180 ASILGGMPYPKQLAALAKMPDILVATPGRLLDHIDAGRIDLSALQMLVFDEADRMLDMGF 239

Query: 164 IPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
              I  I +  P TRQTL+FSAT+   + +++   L++P+RIE+    +    IE     
Sbjct: 240 ADDIDAIVNATPATRQTLMFSATLDARIAQLASRQLRDPQRIEIAAARADQSHIEQRLHF 299

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
           T    S K  LL  LL+   T+K  I+F   K++  +L   L   GFS  A+HG++ Q +
Sbjct: 300 TD-DMSHKERLLDHLLRDA-TLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGA 357

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L+  + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR G
Sbjct: 358 RNRTLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSG 417

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVD 369
            A  LV   D+     IE+   +++D
Sbjct: 418 TAINLVNHNDMFQWKRIERFTNQRID 443


>gi|56708511|ref|YP_170407.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670982|ref|YP_667539.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457676|ref|ZP_03666149.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371138|ref|ZP_04987140.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875360|ref|ZP_05248070.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56605003|emb|CAG46104.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321315|emb|CAL09487.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569378|gb|EDN35032.1| hypothetical protein FTBG_00898 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841359|gb|EET19795.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159724|gb|ADA79115.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 569

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 147/363 (40%), Positives = 228/363 (62%), Gaps = 5/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGL+  +V  V+  GY  PTPIQ   IP +L   DV G AQTGTGKTA+F LP++ 
Sbjct: 8   DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++   +R R P+ L+L PTRELA QVA+ FE + KN  NL VA + GG  + +Q + L+
Sbjct: 68  NMDLA-SRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ T GR++DH  +G L ++N+  LV+DEAD ML MGFI  ++ + S V    Q 
Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQCQR 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++  + E +L+NP +I+V   + TA T+   F+       +K   L +LL+
Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKG--FRKIDALDRLLE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++T    IIF   K + + +  +L+  G+ V AI+G++ Q  R  I+  F+     ++V
Sbjct: 245 TEET-DGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+  + HV N+D+PN  + Y+HRIGRTGRAGR G + +LV  ++++ +  +
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363

Query: 361 EKL 363
           E+ 
Sbjct: 364 ERF 366


>gi|88800218|ref|ZP_01115786.1| ATP-dependent RNA helicase [Reinekea sp. MED297]
 gi|88777064|gb|EAR08271.1| ATP-dependent RNA helicase [Reinekea sp. MED297]
          Length = 534

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 153/374 (40%), Positives = 236/374 (63%), Gaps = 11/374 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L   ++ A+ + GY   +PIQ  T+P  L  HD  G AQTGTGKTA+F++  +T 
Sbjct: 29  FHDLFLPIALMRAIQEVGYEYCSPIQAMTLPYALAGHDCIGKAQTGTGKTAAFLITAITD 88

Query: 63  LEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L + R     V  PR LIL PTRELA Q+A++ +   K   L VA ++GG+ F+ Q ++L
Sbjct: 89  LLEHRLEEQYVGEPRALILAPTRELALQIAEDAKALTKYSRLKVAAVVGGMDFDKQKQQL 148

Query: 120 -ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
            E+  D+L+ TPGR++D  NR  + ++ IE+L+IDEADRMLDMGFIP I+ I    P T 
Sbjct: 149 HEQRTDILVATPGRLIDFMNRKAVFLDQIEMLIIDEADRMLDMGFIPDIKTIVRATPRTE 208

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALL 235
            RQTLLFSAT + ++  +++ +  +P R+EV     TAE +E H ++ +     +K  +L
Sbjct: 209 NRQTLLFSATFSQDILNLAQRWTNDPVRVEVEPKVKTAEDVEQHVYLVSS---EEKYPVL 265

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +++++ QD     ++F N++  V +L  +L+K G     + G++ Q  R++ L  FKEG 
Sbjct: 266 RRIVR-QDEADRVMVFANRRDIVRDLAENLKKDGIPCQVLSGDVPQNKRIRTLDGFKEGK 324

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            +++VA+D+A RG+ +  V HV NF +P   E+Y+HRIGRTGRAG+ G + +   ++D  
Sbjct: 325 FEVLVATDVAGRGIHVDGVSHVINFTLPEDPEDYVHRIGRTGRAGKKGVSISFACEDDSF 384

Query: 356 HIDAIEKLIEKKVD 369
            I AIE+ I++K+D
Sbjct: 385 QIPAIEEYIKRKID 398


>gi|85860692|ref|YP_462894.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
 gi|85723783|gb|ABC78726.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
          Length = 423

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 229/370 (61%), Gaps = 10/370 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    L P++   +   GY  PTPIQ+++IP ++Q  DV G+AQTGTGKTA+F LP+L
Sbjct: 1   MSFTQFNLHPQINAGIEALGYKTPTPIQMQSIPAIIQGRDVMGLAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  G  +  M R LI+ PTRELA Q+ ++  +  ++  L    L GG+    Q +KL 
Sbjct: 61  QRLMNGPGK--MVRALIVAPTRELAEQINESINEMSRSTKLKSVALYGGVSKNPQIEKLR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA++++  PGR+LD   +G   ++ IE+ V+DEADRM DMGF+P I+ IT  +P  RQT
Sbjct: 119 QGAEIIVACPGRLLDLVAQGVADLSGIEVFVLDEADRMFDMGFLPEIRKITKQLPEKRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           LLFSATM  +++ ++++ L +P  I +  + P S   T+ H       +   K ALL +L
Sbjct: 179 LLFSATMPADIRSLAKDILHDPLTIRIGNDIPVS---TVSHTLYP--VEQHLKTALLIKL 233

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+  DT ++ ++F   K     +   ++K GF V ++ G++ Q  R   L+ F+EG  ++
Sbjct: 234 LKETDT-ESVLVFARTKHRTTRVAMQMKKAGFPVSSLQGDLSQNQRQTALNGFREGKYRI 292

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+  + HV N+D+P+  E Y HRIGRTGRA + G AF+ V  E+   +D
Sbjct: 293 LIATDIAARGIDVTRISHVINYDMPDTVEAYTHRIGRTGRATKSGDAFSFVTSEERDLVD 352

Query: 359 AIEKLIEKKV 368
           +IE ++ K++
Sbjct: 353 SIEYVLGKQI 362


>gi|303231880|ref|ZP_07318591.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513487|gb|EFL55518.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 523

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 147/366 (40%), Positives = 229/366 (62%), Gaps = 6/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L +S  V+ A+ D G+ +PTPIQ + IP+ +   D+ G AQTGTGKTA+F LP   +
Sbjct: 5   FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLP---V 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+     R  + +IL PTRELA QVA+   K  +  ++T   + GG     Q + L++ 
Sbjct: 62  LERVDGSNRHVQVVILSPTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQFRALKKN 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++DH +RG +   +++I+V+DEAD ML+MGF+  I  I   +P   QTLL
Sbjct: 122 PQIIVATPGRLMDHMDRGSIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPEDHQTLL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +++++E +L  P  I +     T + IE  ++    Q  +K  +L +L   Q
Sbjct: 182 FSATMPKTIRELAETYLTEPTLIRMKPTQVTMDLIEQYYIE--VQDRQKFDVLCRLFDLQ 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  IIF   K+ V  +  +L+K+G+    IHG++ Q+ R  ++  F+EGTI ++VA+
Sbjct: 240 -APELAIIFTRTKRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVAT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y HR+GRTGRAG+ G+A+T V   +I+H+ AIE+
Sbjct: 299 DVAARGLDISGVSHVYNYDLPQDPESYTHRVGRTGRAGKAGEAYTFVIPREIEHLHAIER 358

Query: 363 LIEKKV 368
           L ++K+
Sbjct: 359 LTKRKI 364


>gi|296119482|ref|ZP_06838040.1| putative cold shock DEAD-box protein A [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967365|gb|EFG80632.1| putative cold shock DEAD-box protein A [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 658

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 146/371 (39%), Positives = 229/371 (61%), Gaps = 9/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL  KV  AV   GY  P+PIQ +TIP++++  DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 62  FGNLGLPDKVQDAVAKVGYTTPSPIQAQTIPILMEGRDVVGLAQTGTGKTAAFALPVLSQ 121

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++      R P+ L+L PTRELA QVAD+F+ +  +   + V  + GG  +  Q   L R
Sbjct: 122 ID---VNARHPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRR 178

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  +G L ++ +  LV+DEAD ML+MGF   ++ I +  P  +Q  
Sbjct: 179 GAQIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILADTPEEKQVA 238

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL-LQ 240
           LFSATM + ++++S+ +L +P  + V +   T + I+  F+ T A  +K  A  + L + 
Sbjct: 239 LFSATMPNSIRRLSKKYLNSPAEVTVKSEQRTNDNIKQRFLLT-AHRAKLDAFTRILEVT 297

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M   I+FC  K     +   L   G++  AI+G+I Q  R + +   K+G + ++V
Sbjct: 298 DYDAM---IVFCRTKHETEEVAEKLRDAGYNAAAINGDIAQNQRERTVDQLKDGRLDILV 354

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV NFD+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +I
Sbjct: 355 ATDVAARGLDVDRITHVVNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSI 414

Query: 361 EKLIEKKVDWL 371
           E++   +++ +
Sbjct: 415 ERVTNARLEEM 425


>gi|254669919|emb|CBA04478.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis alpha153]
          Length = 457

 Score =  289 bits (739), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 159/423 (37%), Positives = 254/423 (60%), Gaps = 21/423 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +K  LL++
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTFQKRNLLER 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416
           ++I++L   K+             +E+I+  +     +    P+K+   + R++N Y S 
Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKTEMREPRQRNRYESA 409

Query: 417 KSH 419
           ++ 
Sbjct: 410 RAQ 412


>gi|226315226|ref|YP_002775122.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226098176|dbj|BAH46618.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 513

 Score =  289 bits (739), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 151/369 (40%), Positives = 228/369 (61%), Gaps = 10/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL   +V A+ + G+ + T IQ +T+P+ LQ  D+ G AQTGTGKTA+F +P++  
Sbjct: 4   FNDFGLHHSIVRALSNMGFEEATAIQDQTVPVALQGRDLIGQAQTGTGKTAAFGIPLIER 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++    ++    ++L PTRELA QVA+   K  +  N++   + GG     Q K L++ 
Sbjct: 64  MDETSGNIQ---GVVLTPTRELAVQVAEEINKIAQFKNISALPIYGGQDITRQIKALKKR 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR +DH  R  + ++ IE++V+DEAD ML+MGFI  I+ I   VP +RQTLL
Sbjct: 121 PQIIVATPGRFMDHMRRRTIRLDAIEVVVLDEADEMLNMGFIDDIKEILKEVPESRQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQ 240
           FSATM   +Q++++ F+  P  I+V     T   I  E+  VA   ++   C LL   + 
Sbjct: 181 FSATMPRAIQEIAQQFMNEPTIIQVKAKEVTVPNIAQEYMEVAEKQKFDVLCRLLD--IH 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S +     IIF   K+ V  L  +L K+G+    IHG+++Q  R  +L  FKEGTI+++V
Sbjct: 239 SPEL---AIIFGRTKRRVDELSEALTKRGYGAEGIHGDLNQAKRDSVLRKFKEGTIEVLV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HVFNFD+P  +E+Y+HRIGRTGRAG+ G A T V   +I H+  I
Sbjct: 296 ATDVAARGLDISGVTHVFNFDIPQDSESYVHRIGRTGRAGKTGLAITFVTSREIDHLRLI 355

Query: 361 EKLIEKKVD 369
           E+   ++++
Sbjct: 356 ERTTNRRME 364


>gi|89072912|ref|ZP_01159469.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89051434|gb|EAR56889.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 432

 Score =  288 bits (738), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 161/411 (39%), Positives = 245/411 (59%), Gaps = 11/411 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G S  +V A+ + GY K TP+Q K IP   +  D+  +AQTGTGKTA+F LP++
Sbjct: 1   MSFLSQGFSQDLVKALTEIGYEKLTPVQQKAIPQARRGADILALAQTGTGKTAAFSLPII 60

Query: 61  T-ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             ++EK +++ R   R LIL PTRELA Q+A+N  +Y K  ++    + GG    +Q K+
Sbjct: 61  QKLIEKPKSKSRFNVRALILAPTRELAEQIANNINEYAKYTDVNCTAIFGGKKMSSQEKR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE+G D+L+ TPGR+++H     + + N+E LV DEADRMLDMGFI  I+ I   +    
Sbjct: 121 LEQGVDILVATPGRLIEHMELNNVSLANLEFLVFDEADRMLDMGFIGAIRVILEDIRTKP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT + ++  ++ + L  P+RI V   +STA+TI H  V       +K  +L +L
Sbjct: 181 QTMLFSATSSPQMNSLASDILHKPQRITVTPENSTADTIAH--VVYPVDEDRKREMLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   K  ++F N K++   L   L+  G      HG+  Q +R + L  FKEG  ++
Sbjct: 239 I-GKKNWKQVLVFVNYKESANQLVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+++AARGLDI ++ +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+   + 
Sbjct: 298 MVATEVAARGLDIQNLPYVVNYDMPFLAEDYVHRIGRTGRAGQKGNAISFVSREEELTLV 357

Query: 359 AIEKLIEK---KVDWLNGDLSSLNPPLEKIDIA---QHNHARKNNPIPQKS 403
            IE+LI +   +V  +  +  S +  LE++           RKNNP   +S
Sbjct: 358 QIERLIGQRIHRVQLIGYEPKSRDALLERMHSKPAFSQREGRKNNPTQDQS 408


>gi|325198557|gb|ADY94013.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           G2136]
          Length = 457

 Score =  288 bits (738), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 160/423 (37%), Positives = 253/423 (59%), Gaps = 21/423 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +K  LL++
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTIQKRNLLER 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416
           ++I++L   K+             +E+I+  +     +    P+K    + R++N Y S 
Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRYESA 409

Query: 417 KSH 419
           K+ 
Sbjct: 410 KAQ 412


>gi|304387245|ref|ZP_07369442.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria meningitidis ATCC
           13091]
 gi|304338733|gb|EFM04846.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria meningitidis ATCC
           13091]
          Length = 457

 Score =  288 bits (738), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 160/423 (37%), Positives = 253/423 (59%), Gaps = 21/423 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +K  LL++
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTFQKRNLLER 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416
           ++I++L   K+             +E+I+  +     +    P+K    + R++N Y S 
Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRYESA 409

Query: 417 KSH 419
           K+ 
Sbjct: 410 KAQ 412


>gi|228963331|ref|ZP_04124496.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228796359|gb|EEM43802.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 510

 Score =  288 bits (738), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 153/364 (42%), Positives = 226/364 (62%), Gaps = 8/364 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  ++  +  V+    +++ 
Sbjct: 2   GFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKEAVQ---GIVIA 58

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA QV +   K GK+  + +  + GG     Q + L++   +++ TPGRILDH NR
Sbjct: 59  PTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINR 118

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
             L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLLFSATM D +++++E F+
Sbjct: 119 KTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFM 178

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
             P+ I+V     T   I+  ++    Q  KK  +L +LL  Q + +  I+F   K+ V 
Sbjct: 179 TEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ-SPELAIVFGRTKRRVD 235

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            L  +L  +G++   IHG++ Q  RM +L  FKEG I+++VA+D+AARGLDI  V HV+N
Sbjct: 236 ELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYN 295

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           FD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+  ++KVD +     +L+
Sbjct: 296 FDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEA--PTLD 353

Query: 380 PPLE 383
             LE
Sbjct: 354 EALE 357


>gi|208779079|ref|ZP_03246425.1| conserved hypothetical protein [Francisella novicida FTG]
 gi|254374120|ref|ZP_04989602.1| ATP-dependent RNA helicase [Francisella novicida GA99-3548]
 gi|151571840|gb|EDN37494.1| ATP-dependent RNA helicase [Francisella novicida GA99-3548]
 gi|208744879|gb|EDZ91177.1| conserved hypothetical protein [Francisella novicida FTG]
          Length = 569

 Score =  288 bits (738), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 147/363 (40%), Positives = 228/363 (62%), Gaps = 5/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGL+  +V  V+  GY  PTPIQ   IP +L   DV G AQTGTGKTA+F LP++ 
Sbjct: 8   DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++   +R R P+ L+L PTRELA QVA+ FE + KN  NL VA + GG  + +Q + L+
Sbjct: 68  NMDLA-SRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ T GR++DH  +G L ++N+  LV+DEAD ML MGFI  ++ + S V    Q 
Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSDECQR 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++  + E +L+NP +I+V   + TA T+   F+       +K   L +LL+
Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKG--FRKIDALDRLLE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++T    IIF   K + + +  +L+  G+ V AI+G++ Q  R  I+  F+     ++V
Sbjct: 245 TEET-DGVIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+  + HV N+D+PN  + Y+HRIGRTGRAGR G + +LV  ++++ +  +
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363

Query: 361 EKL 363
           E+ 
Sbjct: 364 ERF 366


>gi|94311500|ref|YP_584710.1| DEAD/DEAH box helicase-like protein [Cupriavidus metallidurans
           CH34]
 gi|93355352|gb|ABF09441.1| ATP-dependent RNA helicase [Cupriavidus metallidurans CH34]
          Length = 634

 Score =  288 bits (738), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 156/386 (40%), Positives = 231/386 (59%), Gaps = 21/386 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA LGL   ++ A+ +A Y  PTP+Q + IP  L   D+   +QTG+GKTA+F+LP +  
Sbjct: 51  FAKLGLDAAILRALAEANYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQR 110

Query: 62  ILEK----------GRARVRMPRT-------LILEPTRELAAQVADNFEKYGKNYNLTV- 103
           I EK           R + + PR        L+L PTRELA QV +   KYG++    V 
Sbjct: 111 ISEKPATHRPTEPAKRMKGKRPRPSPAQPSLLVLTPTRELALQVTEAAAKYGRHLRRIVC 170

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163
           A ++GG+P+  Q   L R  D+L+ TPGR+LDH   G++ ++ +E+LV DEADRMLDMGF
Sbjct: 171 ASILGGMPYPKQLAMLARMPDILVATPGRLLDHIEAGRIDLSALEMLVFDEADRMLDMGF 230

Query: 164 IPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
              I  I +  P +RQTL+FSAT+   + +++   L++P+RIE+    +    IE     
Sbjct: 231 ADDIDAIVAATPASRQTLMFSATLDARIAQLASRQLRDPQRIEIAAARADHSNIEQRLHF 290

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
           T    S K  LL  LL+   ++K  I+F   K++  +L   L   GFS  A+HG++ Q +
Sbjct: 291 T-DDMSHKERLLDHLLRDA-SLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGA 348

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L+  + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR G
Sbjct: 349 RNRTLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSG 408

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVD 369
            A  LV   D+     IE+    ++D
Sbjct: 409 VAINLVNHGDMFQWRRIERFTNNRID 434


>gi|254805204|ref|YP_003083425.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha14]
 gi|254668746|emb|CBA06600.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha14]
          Length = 457

 Score =  288 bits (738), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 160/423 (37%), Positives = 253/423 (59%), Gaps = 21/423 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +K  LL++
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTIQKRNLLER 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416
           ++I++L   K+             +E+I+  +     +    P+K    + R++N Y S 
Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRYESA 409

Query: 417 KSH 419
           K+ 
Sbjct: 410 KAQ 412


>gi|254372659|ref|ZP_04988148.1| ATP-dependent RNA helicase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570386|gb|EDN36040.1| ATP-dependent RNA helicase [Francisella novicida GA99-3549]
          Length = 569

 Score =  288 bits (738), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 147/363 (40%), Positives = 228/363 (62%), Gaps = 5/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGL+  +V  V+  GY  PTPIQ   IP +L   DV G AQTGTGKTA+F LP++ 
Sbjct: 8   DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++   +R R P+ L+L PTRELA QVA+ FE + KN  NL VA + GG  + +Q + L+
Sbjct: 68  NMDLA-SRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ T GR++DH  +G L ++N+  LV+DEAD ML MGFI  ++ + S V    Q 
Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQCQR 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++  + E +L+NP +I+V   + TA T+   F+       +K   L +LL+
Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKG--FRKIDALDRLLE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++T    IIF   K + + +  +L+  G+ V AI+G++ Q  R  I+  F+     ++V
Sbjct: 245 TEET-DGVIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+  + HV N+D+PN  + Y+HRIGRTGRAGR G + +LV  ++++ +  +
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363

Query: 361 EKL 363
           E+ 
Sbjct: 364 ERF 366


>gi|295688310|ref|YP_003592003.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295430213|gb|ADG09385.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
           21756]
          Length = 475

 Score =  288 bits (738), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 151/368 (41%), Positives = 225/368 (61%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  ++ A+ + GY +PTPIQ + IP+VLQ  D+ GIAQTGTGKTA+F LP+L  
Sbjct: 4   FADLGLAKPLLKALAEKGYKEPTPIQAQAIPVVLQGKDLLGIAQTGTGKTAAFALPILQR 63

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L + R  A  R  R L+L PTRELA Q+A+NF+ Y  +  L+V  + GG+ +  Q K L 
Sbjct: 64  LAEDRKPAPRRGFRCLVLSPTRELATQIAENFKAYAVHMGLSVHTIYGGVKYGPQMKALA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVL+ TPGR++DH      +++  EI V+DEAD+MLD+GF+  I+ I S +   RQ 
Sbjct: 124 GGIDVLVATPGRLMDHMAEKSAIVSGTEIFVLDEADQMLDLGFVVPIRKIASQLTKNRQN 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+ K++   L++P ++ V   ++T E I+   +   AQ  +K  LL +L  
Sbjct: 184 LFFSATMPSEIGKLAGELLKDPVQVSVAPQATTVERIDQRVLFIEAQ--RKRPLLAELF- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  +    I+F   K+    +   L   G    +IHG+  Q  R + L+ FK G ++ +V
Sbjct: 241 ADSSFSRTIVFTRTKRGADRVAKYLNAAGIEAASIHGDKTQGQRERALAAFKAGEMRALV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV HV N+++PN  E Y+HRIGRT R G+ G A +  A ++   +  I
Sbjct: 301 ATDIAARGIDVNDVSHVINYELPNVPEAYVHRIGRTARKGKDGIAISFCADDERNLLKDI 360

Query: 361 EKLIEKKV 368
           +K   + +
Sbjct: 361 QKATRQTI 368


>gi|118497286|ref|YP_898336.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. novicida U112]
 gi|194323589|ref|ZP_03057366.1| conserved hypothetical protein, putative [Francisella tularensis
           subsp. novicida FTE]
 gi|118423192|gb|ABK89582.1| DEAD-box subfamily ATP-dependent helicase [Francisella novicida
           U112]
 gi|194322444|gb|EDX19925.1| conserved hypothetical protein, putative [Francisella tularensis
           subsp. novicida FTE]
          Length = 569

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 147/363 (40%), Positives = 228/363 (62%), Gaps = 5/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGL+  +V  V+  GY  PTPIQ   IP +L   DV G AQTGTGKTA+F LP++ 
Sbjct: 8   DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++   +R R P+ L+L PTRELA QVA+ FE + KN  NL VA + GG  + +Q + L+
Sbjct: 68  NMDLA-SRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ T GR++DH  +G L ++N+  LV+DEAD ML MGFI  ++ + S V    Q 
Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSDECQR 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++  + E +L+NP +I+V   + TA T+   F+       +K   L +LL+
Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKG--FRKIDALDRLLE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++T    IIF   K + + +  +L+  G+ V AI+G++ Q  R  I+  F+     ++V
Sbjct: 245 TEET-DGVIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+  + HV N+D+PN  + Y+HRIGRTGRAGR G + +LV  ++++ +  +
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363

Query: 361 EKL 363
           E+ 
Sbjct: 364 ERF 366


>gi|254369546|ref|ZP_04985557.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. holarctica FSC022]
 gi|157122500|gb|EDO66635.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 569

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 147/363 (40%), Positives = 228/363 (62%), Gaps = 5/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGL+  +V  V+  GY  PTPIQ   IP +L   DV G AQTGTGKTA+F LP++ 
Sbjct: 8   DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++   +R R P+ L+L PTRELA QVA+ FE + KN  NL VA + GG  + +Q + L+
Sbjct: 68  NMDLA-SRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ T GR++DH  +G L ++N+  LV+DEAD ML MGFI  ++ + S V    Q 
Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQCQR 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++  + E +L+NP +I+V   + TA T+   F+       +K   L +LL+
Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKG--FRKIDALDRLLE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++T    IIF   K + + +  +L+  G+ V AI+G++ Q  R  I+  F+     ++V
Sbjct: 245 TEET-DGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+  + HV N+D+PN  + Y+HRIGRTGRAGR G + +LV  ++++ +  +
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363

Query: 361 EKL 363
           E+ 
Sbjct: 364 ERF 366


>gi|87310130|ref|ZP_01092262.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
 gi|87287120|gb|EAQ79022.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
          Length = 428

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 152/389 (39%), Positives = 238/389 (61%), Gaps = 11/389 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +++AD+ LS ++  A+  A Y++P+PIQ   IPL L+  DV G A+TGTGKTA+F +P++
Sbjct: 4   INYADMALSVEMKAALEAARYIQPSPIQAAIIPLALEGRDVLGQARTGTGKTAAFGIPII 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE G    R P+ LIL PTRELA QV D   K      + V  + GG P  +Q +KL+
Sbjct: 64  ERLEHG-PNSRNPQALILTPTRELAVQVRDEIAKLTHGQRINVVAVYGGKPLRSQMEKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   +++ TPGR++D   R  L +  +  +V+DEADRMLD+GF P I+ I    P  RQT
Sbjct: 123 RAPHIVVGTPGRVIDLMTRRALQLEMLRTVVLDEADRMLDIGFRPDIEKILRRCPEERQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL SAT+   ++K+++ +++NP++++ +  + +AETIE  +      +SKK  +L +LL+
Sbjct: 183 LLLSATVPPTIEKLAQRYMRNPEKVDFSPTNISAETIEQRYFTV--DHSKKFDMLVELLK 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   K  I+FC  K+    +   L K+   V  IHG++ Q +R + LS+FK    +++V
Sbjct: 241 REQPQK-AIVFCRTKRGTERITQRLSKKTKLVHCIHGDMQQGARNRALSDFKASKFRVLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+  RG+DI DV H+ N+D+P  +++Y+HR+GRTGR G+ G A+T V  E+   +  I
Sbjct: 300 ATDVVGRGIDISDVSHIINYDIPEFSDDYVHRVGRTGRMGKEGIAYTFVTPEEGNELTRI 359

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDI 387
           E  I+K +  D L G       P E+ D+
Sbjct: 360 EVRIDKLLIRDELPG-----FAPYERTDV 383


>gi|121635112|ref|YP_975357.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
 gi|120866818|emb|CAM10576.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
          Length = 483

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 159/423 (37%), Positives = 254/423 (60%), Gaps = 21/423 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 31  FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 90

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 91  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 150

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 151 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 210

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +K  LL++
Sbjct: 211 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTIQKRNLLER 268

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 269 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 327

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 328 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 387

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416
           ++I++L   K+             +E+I+  +     +    P+K+   + R++N Y S 
Sbjct: 388 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKTEMREPRQRNRYESA 435

Query: 417 KSH 419
           ++ 
Sbjct: 436 RAQ 438


>gi|83593250|ref|YP_427002.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
 gi|83576164|gb|ABC22715.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
          Length = 393

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 154/371 (41%), Positives = 229/371 (61%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA L L   +  AV   GY   TPIQ   IP  L   DV GIAQTGTGKTASFVLP+L 
Sbjct: 3   EFASLDLIEPLARAVTALGYTVATPIQAGAIPPQLLGRDVLGIAQTGTGKTASFVLPLLQ 62

Query: 62  ILEKG-RARV-RMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
            L K  + RV   PR LIL PTRELA Q+ ++    G+  + +   +++GG+    Q + 
Sbjct: 63  RLTKDPQPRVPGRPRALILTPTRELAQQITESIGDLGRTLSAIRCGVVVGGVDILRQTRM 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++RG ++L+ TPGR+ D  NR  + +  IE+LV+DEADRMLDMGF P ++ I +++P  R
Sbjct: 123 VQRGLEILVATPGRLQDLMNRKAVDLRAIEVLVLDEADRMLDMGFAPAVKKIAAVLPRKR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT++FSAT+ +E+  +  + + +P R+EV   +S A  I+   +  + + + K  LL  L
Sbjct: 183 QTVMFSATLPNEVTGLVASLMNDPVRVEVAPAASVANRIDQRVL--FVEQTNKRKLLLDL 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L     ++  I+F   K     L   L + G     IHGN  Q +R + L++FK G ++ 
Sbjct: 241 LGDARKVERAIVFTRTKHGANKLGIFLLEYGVKSDVIHGNKSQGARQRALNDFKSGKVRA 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + HV NFD+PN  E+Y+HRIGRT RAG  G A +L A +++ ++ 
Sbjct: 301 LVATDIAARGIDVDGITHVINFDLPNEPESYVHRIGRTARAGAAGIALSLCAPQEMPYLK 360

Query: 359 AIEKLIEKKVD 369
           AIEK+I+ ++D
Sbjct: 361 AIEKVIKSRID 371


>gi|317493632|ref|ZP_07952053.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918575|gb|EFV39913.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 636

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 144/377 (38%), Positives = 236/377 (62%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLAAPIIQALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++     ++ P+ L+L PTRELA QV++    + K+ N + V  L GG  ++ Q + L +
Sbjct: 68  IDPS---LKAPQVLVLAPTRELAVQVSEAMADFAKHMNGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAQHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSITTRPDISQSYWTVFGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G+S  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
            I KL   +V+  N +L
Sbjct: 362 RIMKLTIPEVEIPNAEL 378


>gi|134096391|ref|YP_001101466.1| putative cold-shock DeaD box ATP-dependent RNA helicase (partial
           match) [Herminiimonas arsenicoxydans]
 gi|133740294|emb|CAL63345.1| putative ATP-dependent RNA helicase DeaD-like [Herminiimonas
           arsenicoxydans]
          Length = 826

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 152/378 (40%), Positives = 229/378 (60%), Gaps = 9/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL LS  ++  + + GY  P+PIQ  TIPL+L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 9   FSDLNLSEPLLRVLKELGYEAPSPIQAATIPLLLNNSDVLGQAQTGTGKTAAFALPILSR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++    +   P+ L+L PTRELA QVA+ F++Y  +     V  + GG  + AQ   L R
Sbjct: 69  ID---IKQTTPQALVLAPTRELAIQVAEAFQRYASHIPGFHVLPIYGGQSYGAQLSALRR 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  +G L ++ ++ +V+DEAD ML MGFI  ++ I    P  RQT 
Sbjct: 126 GVHVVVGTPGRVIDHLEKGSLDLSKLKTMVLDEADEMLRMGFIDDVETILQKTPEARQTA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +++++  +L++P+ I V   + TA+ I   +        +K   L ++L++
Sbjct: 186 LFSATMPSAIKRIATTYLRDPELITVAAKTGTADNIRQRYWLVSGM--QKLEALTRILEA 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T    IIF   K     L   L+ +GFS  AI+G+I Q+ R + +   K+G I ++VA
Sbjct: 244 E-TFDGMIIFARTKLGTEELAGKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDILVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+DVP+  E+Y HRIGRTGRAGR G+A   +A  +   + AIE
Sbjct: 303 TDVAARGLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPRERNLLKAIE 362

Query: 362 KLIEKKVDWLNGDLSSLN 379
           +   + +  L  DL S+ 
Sbjct: 363 RATRQPIAVL--DLPSVE 378


>gi|325104434|ref|YP_004274088.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324973282|gb|ADY52266.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 445

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 156/372 (41%), Positives = 235/372 (63%), Gaps = 11/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D   + +++ A+ +AGY +PTPIQ K IP +L   DV GIAQTGTGKTA++VLPM+ 
Sbjct: 4   NFEDFKFNRQILNAIEEAGYTQPTPIQEKAIPPILNGQDVLGIAQTGTGKTAAYVLPMIM 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+   A+    R LIL PTRELA Q+ +N + + K  +L   ++ GGI  +AQ  +L +
Sbjct: 64  KLK--FAQGDDIRALILAPTRELALQIEENVKIFSKYTDLRSVVVFGGIGPKAQADQLAK 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GAD+LI TPGR +D +  G ++   ++ LV+DEAD+M+DMGF+P I  +  +VP  RQ L
Sbjct: 122 GADILIATPGRFMDLYLDGHIVTKKLQFLVLDEADKMMDMGFMPQINKVLEIVPKKRQNL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQLL 239
           LFSATM+++++++SENFL  P ++EV   ++ AET+E    FV        K  LL+  +
Sbjct: 182 LFSATMSEKVERLSENFLLWPTKVEVTPQATPAETVEQELYFVPN---LKTKINLLKIFV 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS---VCAIHGNIDQRSRMKILSNFKEGTI 296
           +    +   IIFC  +    N+   L ++ F+   V  +H N  Q +R+  +++FK   +
Sbjct: 239 EDDPDVSKLIIFCRTRVVAENVYRFLLRR-FNENHVKVLHANKGQNTRINSINSFKNDEV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARG+D+  V HV NF+VP   E+Y+HRIGRTGRA   GKA T     +   
Sbjct: 298 RILVATDVAARGIDVSSVSHVINFEVPVVYEDYVHRIGRTGRAFSQGKAITFCNPAEEYS 357

Query: 357 IDAIEKLIEKKV 368
           I  IEKLI +++
Sbjct: 358 IRKIEKLIRQQI 369


>gi|170782231|ref|YP_001710564.1| cold-shock DEAD-box RNA helicase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156800|emb|CAQ01964.1| cold-shock DEAD-box RNA helicase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 585

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 147/362 (40%), Positives = 226/362 (62%), Gaps = 9/362 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGLS +V+ A+ D GY  P+ IQ  TIP +L   DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 19  FSDLGLSDQVLKALKDVGYETPSAIQAATIPSLLSGRDVLGVAQTGTGKTAAFALPILSN 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+  +   + P+ L+L PTRELA QV + FE+Y      + V  + GG  +  Q   L R
Sbjct: 79  LDVAQ---KTPQALVLAPTRELALQVCEAFERYASGMRGVHVLPVYGGQGYGVQLSALRR 135

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGRI+DH ++G L ++ ++ LV+DEAD ML MGF   ++ I +  P ++Q  
Sbjct: 136 GVHVVVGTPGRIMDHLDKGTLDLSQLKFLVLDEADEMLKMGFAEDVETILADTPKSKQIA 195

Query: 182 LFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSATM  +++++S  +LQ+P+ I V N  +++A T +   + +Y Q   K   L ++L+
Sbjct: 196 LFSATMPAQIRRISGKYLQDPEEITVKNKTTTSANTTQRYLMVSYPQ---KVDALTRILE 252

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++  +  I+F   K     L   L  +G++  AI G++ Q  R + +   K G + ++V
Sbjct: 253 TEN-FEGMIVFVRTKNETETLAEKLRARGYAAAAISGDVAQAQRERTVEQLKNGKLDILV 311

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A + V   + + + AI
Sbjct: 312 ATDVAARGLDVDRISHVVNYDIPIDTESYVHRIGRTGRAGRSGAAISFVTPRERRLLTAI 371

Query: 361 EK 362
           EK
Sbjct: 372 EK 373


>gi|238020287|ref|ZP_04600713.1| hypothetical protein GCWU000324_00164 [Kingella oralis ATCC 51147]
 gi|237867267|gb|EEP68273.1| hypothetical protein GCWU000324_00164 [Kingella oralis ATCC 51147]
          Length = 468

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 166/448 (37%), Positives = 261/448 (58%), Gaps = 17/448 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL  ++  A+ +  Y  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 4   FTELGLGHEICTALAEQNYQTPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 63

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+    Q  
Sbjct: 64  LKRYANASASPAMHPVRMLVLTPTRELADQIDQNTQNYIKNMPLRHTVLFGGVNMNKQTA 123

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G +++I T GR+LDH  +  + ++ +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 124 ELRAGCEIVIATVGRLLDHVKQKNINLSKVEIVVLDEADRMLDMGFIDDIRTIMQMLPKP 183

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT    ++K++++F+  P+ +EV   ++T   +E   ++  +   +K  LL++
Sbjct: 184 RQTLLFSATFAPAIRKLAQDFMNAPQIVEVAAQNTTNANVEEHVISIDSH--RKRELLER 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+   + M   I+FC  K++   +   L ++G S  AIHG+  Q++R+ +L+ FK G ++
Sbjct: 242 LIVDLN-MNQVIVFCKTKQSADQVSRDLVRRGLSANAIHGDKSQQTRLDVLNQFKSGELR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P +AE+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 301 VLVATDVAARGLDIAELPFVVNYEMPTQAEDYVHRIGRTGRAGADGVAISLMDETEQKMY 360

Query: 358 DAIEKLI--EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           +AI+ L   E  +  + G      P  E+   AQ   + KN   P+ S+  + R+    S
Sbjct: 361 EAIKALTGNELPISRIEG----FEPHWEQ---AQAEGSLKNENSPRASSRRNEREPQERS 413

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSL 443
           +K+        + S   Q+I   DA  +
Sbjct: 414 EKNDRRASSRNERSGRHQEIPTVDASKI 441


>gi|39995629|ref|NP_951580.1| ATP-dependent RNA helicase RhlB [Geobacter sulfurreducens PCA]
 gi|39982392|gb|AAR33853.1| ATP-dependent RNA helicase RhlB [Geobacter sulfurreducens PCA]
 gi|307634711|gb|ADI83374.2| ATP-dependent RNA helicase RhlB [Geobacter sulfurreducens KN400]
          Length = 443

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 158/381 (41%), Positives = 231/381 (60%), Gaps = 9/381 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADL L  +V+  V DAG+   TPIQ KT+PL L   DV G AQTGTGKTA+F++ + 
Sbjct: 1   MKFADLNLPEQVMQGVADAGFSDCTPIQEKTLPLSLGGKDVAGQAQTGTGKTAAFLISLF 60

Query: 61  T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           T +L  GR    R PR +IL PTREL  Q+  + +  G +   T+  + GG+ +  Q   
Sbjct: 61  TKLLRSGRGGERRHPRAIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYGGVDYMKQKNA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176
           L+ GADV++ TPGR++D+  +    +  IE+LVIDEADRM DMGFI  ++ I   +P   
Sbjct: 121 LKEGADVVVGTPGRLIDYLKQKVYSLKEIEMLVIDEADRMFDMGFIADLRFILRRLPPYD 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ L+FSAT+   + +++  F+  P+++ V     TAE +E   V  +    +K  LL 
Sbjct: 181 KRQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQ--VLYHVGRKEKFPLLL 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL+ ++ M+  +IF N K+    L   L    F    I G+++QR R+KIL +FK G +
Sbjct: 239 GLLR-KEGMERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDFKSGKL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +M+A+D+A+RGL I  V HV N+D+P  AE+Y+HRIGRT RAG  GKA ++  ++   H
Sbjct: 298 PIMIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISMADEDGAFH 357

Query: 357 IDAIEKLIEKK--VDWLNGDL 375
           ++AI + I+ K  V+W   DL
Sbjct: 358 LEAIHEYIKDKIPVEWAEDDL 378


>gi|227832855|ref|YP_002834562.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
           700975]
 gi|262182657|ref|ZP_06042078.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
           700975]
 gi|227453871|gb|ACP32624.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 669

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 231/371 (62%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   V  AV   G+ KP+PIQ +TIP++++  DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 65  FAHLGLPDDVQEAVSKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQ 124

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++      R P+ L+L PTRELA QVAD+F+ +  +   + V  + GG  +  Q   L R
Sbjct: 125 ID---TEARYPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRR 181

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  +G L ++ +  LV+DEAD ML+MGF   ++ I    P  +Q  
Sbjct: 182 GAQIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVA 241

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++S+ +L NP  + V +   T + I   F+ T   +  K     ++L+ 
Sbjct: 242 LFSATMPNSIRRLSKQYLNNPAEVTVKSERRTNDNITQRFLLT--PHRHKMDAFTRILEV 299

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D     I+FC  K    ++  SL++ G++  AI+G+I Q+ R + +   K+G + ++VA
Sbjct: 300 ID-YDAIIVFCRTKHATEDVADSLKEAGYNAAAINGDIAQQQRERTVDQLKDGRLDILVA 358

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 359 TDVAARGLDVDRITHVVNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 418

Query: 362 KLIEKKVDWLN 372
           ++   +++ ++
Sbjct: 419 RVTNARLEEMD 429


>gi|315223209|ref|ZP_07865070.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
 gi|315187641|gb|EFU21395.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
          Length = 539

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 145/369 (39%), Positives = 231/369 (62%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P    
Sbjct: 24  FNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFP---T 80

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEK      + + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L  G
Sbjct: 81  LEKINTENPVVQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALRSG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A +++ TPGR+LD   R  L +N++E L++DEAD ML+MGF+  I+ I S VP  RQTLL
Sbjct: 141 AHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPEERQTLL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D ++++   F++ P  +++     T E ++  ++    + ++K   + +L+  +
Sbjct: 201 FSATMPDAIKRIGVKFMKEPTHVKIAAKELTTELVDQYYIRV--KENEKFDTMTRLMDVE 258

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++VA+
Sbjct: 259 QP-ELSIVFGRTKRRVDELTRGLKIRGFRTEGIHGDLDQGKRLRVLRDFKNGNLDILVAT 317

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  IE 
Sbjct: 318 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQVIES 377

Query: 363 LIEKKVDWL 371
           L +K++  +
Sbjct: 378 LTKKRMKGM 386


>gi|254425310|ref|ZP_05039028.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335]
 gi|196192799|gb|EDX87763.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335]
          Length = 471

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 148/368 (40%), Positives = 227/368 (61%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS   V  +   G+ +PT IQI+ IP +L  HDV G+AQTGTGKTA+F LPML  
Sbjct: 5   FADLGLSSACVEHLTQIGFTEPTAIQIQAIPQLLSGHDVVGLAQTGTGKTAAFSLPML-- 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E+     R  + L+L PTRELA QV+   E +  +  L V  + GG   + Q ++L+RG
Sbjct: 63  -EQVNPANRYVQALVLTPTRELAMQVSQAMESFNTDKRLYVTSVYGGQSIDRQIQRLKRG 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGRI+D   RG L+++ + I+V+DEAD ML+MGFI  ++ I S  P  RQT  
Sbjct: 122 SQIVVGTPGRIIDLIERGGLVLDRLSIMVLDEADEMLNMGFIQDVETILSHTPDERQTAF 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +QK+S  FL++P  + V   +S+   I+         +SK  AL+  +L+ +
Sbjct: 182 FSATMEPAIQKLSTRFLKSPVTVSVEAKTSSTARIKQIAYTVPPGWSKPRALM-PILEME 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D  ++ IIF   ++    L   L+  G S    HG++ Q  R ++L  FK+  ++ +VA+
Sbjct: 241 DP-ESAIIFVRTRRTAAELTRQLQAAGHSADEYHGDLTQPQRERLLQRFKQRQVRWVVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+ + D+ HV N+++P+  ++Y+HRIGRTGRAG+ G+A ++V   +   +  IEK
Sbjct: 300 DIAARGIHVDDLSHVINYELPDNLDSYVHRIGRTGRAGKEGRAVSIVMTLEKYKLSRIEK 359

Query: 363 LIEKKVDW 370
             +K V++
Sbjct: 360 RFKKSVEY 367


>gi|292486843|ref|YP_003529713.1| cold-shock DEAD box protein A [Erwinia amylovora CFBP1430]
 gi|292900759|ref|YP_003540128.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291200607|emb|CBJ47739.1| ATP-dependent RNA helicase (cold-shock dead-box protein) [Erwinia
           amylovora ATCC 49946]
 gi|291552260|emb|CBA19297.1| Cold-shock DEAD box protein A [Erwinia amylovora CFBP1430]
 gi|312170911|emb|CBX79170.1| Cold-shock DEAD box protein A [Erwinia amylovora ATCC BAA-2158]
          Length = 638

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 146/377 (38%), Positives = 238/377 (63%), Gaps = 11/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  ++ ++   GYVKP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     V+ P+ L+L PTRELA QVA+   ++ K+   L V  L GG  ++ Q + L +
Sbjct: 68  IDPT---VKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++ F+++P+ + + +  +T   I   +   +  Y +K   L + L++
Sbjct: 185 LFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSY---WTAYGRKTDALTRFLEA 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 242 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 301 TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 360

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 361 RTMKLTIPEVELPNAEL 377


>gi|212636923|ref|YP_002313448.1| DEAD box family ATP-dependent RNA helicase [Shewanella
           piezotolerans WP3]
 gi|212558407|gb|ACJ30861.1| ATP-dependent RNA helicase, DEAD box family [Shewanella
           piezotolerans WP3]
          Length = 432

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 153/370 (41%), Positives = 227/370 (61%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P+++ A+ + GY K TPIQ + IP V +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFAPEILRAISECGYQKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFSLPIL 60

Query: 61  -TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +L+   A  R   R LIL PTRELAAQ+ADN   Y K   + V  ++GG+  ++Q  K
Sbjct: 61  QKMLDNPSATQRSNARALILTPTRELAAQIADNINDYAKYLEVNVVTIVGGVKMDSQATK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RGAD++I TPGR+L+H     L ++N++ LV+DEADRMLDMGF   IQ I   V   R
Sbjct: 121 LKRGADIIIATPGRLLEHIVACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNSKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT +  ++K++   +  P  I  +  ++TA+T+         +  +K  LL +L
Sbjct: 181 QNLMFSATFSAPVKKLASEMMVKPNVITADKQNTTADTVSQVIYPV--EQRRKRELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F   +     L   L   G     +HG   Q SR + L  FKEG +++
Sbjct: 239 I-GKKNWQQVLVFTATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREFKEGKMRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDI D+ +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLA 357

Query: 359 AIEKLIEKKV 368
            IEKLI +K+
Sbjct: 358 DIEKLIGQKL 367


>gi|152992584|ref|YP_001358305.1| DEAD-box ATP dependent DNA helicase [Sulfurovum sp. NBC37-1]
 gi|151424445|dbj|BAF71948.1| ATP-dependent RNA helicase, DEAD-box family [Sulfurovum sp.
           NBC37-1]
          Length = 492

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 154/368 (41%), Positives = 231/368 (62%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L   +  AV +AG+ +P+P+Q   IPLVL+ HD+   AQTGTGKTA+F LP++
Sbjct: 1   MKFTDFNLKDTIQAAVAEAGFKEPSPVQKDAIPLVLEGHDMIAQAQTGTGKTAAFGLPIM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +++ K    V     L++ PTRELA QV+D   ++GK   L  A + GG  +  Q ++++
Sbjct: 61  SMM-KADGSVE---GLVIVPTRELAMQVSDELFRFGKLSGLKTATVYGGTAYGKQIERIK 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           + A +++ TPGR+ D    GK+ +N    +V+DEAD MLDMGF+  I+NI + +P  RQT
Sbjct: 117 Q-ASIVVATPGRLQDLLMSGKIKLNP-HFVVLDEADEMLDMGFLDEIKNIFTFLPKERQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSATM + ++K++E  L NPK + +    ST   I   +     Q  ++   L +L+ 
Sbjct: 175 LMFSATMPNGIRKLAEQILNNPKTVSITKSESTNSKITQYYYV--VQERERDDALVRLID 232

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  K  IIFC  KK V  L   L  QGF V  +HG+++Q+ R   +  FK+G I + V
Sbjct: 233 YKNPEKC-IIFCRMKKEVDRLVAHLTAQGFKVSGLHGDMEQKQREVTIRAFKQGGIDIFV 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HVFN+ +P  +E+Y+HRIGRTGRAG+ G+A TLV+  +++ I  I
Sbjct: 292 ATDVAARGLDVNDVTHVFNYHIPFDSESYVHRIGRTGRAGKTGEAITLVSPNELRTIKRI 351

Query: 361 EKLIEKKV 368
           EK +  K+
Sbjct: 352 EKDVGTKM 359


>gi|78485359|ref|YP_391284.1| DEAD/DEAH box helicase-like [Thiomicrospira crunogena XCL-2]
 gi|78363645|gb|ABB41610.1| DEAD/DEAH box helicase family protein [Thiomicrospira crunogena
           XCL-2]
          Length = 393

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 157/366 (42%), Positives = 224/366 (61%), Gaps = 5/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V AV + GY  PT IQ + IP++L   D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSKLGLSDPIVKAVSERGYDAPTDIQKQAIPIILSGKDLMAAAQTGTGKTASFVLPLL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L    A R R  R LIL PTRELA QV  N   Y K+ NL+     GG   +AQ ++L
Sbjct: 61  EKLNTDNAIRGRSIRALILVPTRELAMQVETNVVDYAKHLNLSSMAAYGGTDIDAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD   +  L  +++E LV+DEAD+MLDMGFI  +  IT  +P  RQ
Sbjct: 121 MQGIDILVATPGRLLDLAYQRALFFDDLEFLVLDEADKMLDMGFIDDLYKITDRLPHQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +LLFSAT+T+ ++ ++ + +  +   I ++  + T   I+   +        K ALL  L
Sbjct: 181 SLLFSATLTEAVRYLAADTVSDDATEISISPQNKTTPKIKQWLITV--DKDTKSALLSHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  Q      +IF  +K +   L   L K+G    +IH    Q +R ++LS FK G ++ 
Sbjct: 239 INEQH-WDQALIFVEKKHSAAKLVEQLGKRGIIADSIHSGRSQAAREQVLSEFKSGKLKF 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+ +AARG+DI ++  V N+D+P  AE YIHRIGRTGRAG  G+A +LV+K+D K++ 
Sbjct: 298 LIATGIAARGIDIDNLSRVVNYDLPYPAEEYIHRIGRTGRAGATGEALSLVSKDDFKNLC 357

Query: 359 AIEKLI 364
           AIE L+
Sbjct: 358 AIESLL 363


>gi|149910902|ref|ZP_01899534.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Moritella sp.
           PE36]
 gi|149806056|gb|EDM66039.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Moritella sp.
           PE36]
          Length = 431

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 162/393 (41%), Positives = 237/393 (60%), Gaps = 13/393 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L+  ++  V   GY  PTPIQ + IP +L+  D+ G AQTGTGKTA+F LP++
Sbjct: 1   MGFSALNLNQNLINTVTKLGYETPTPIQAQAIPAILEGRDIMGGAQTGTGKTAAFALPII 60

Query: 61  TIL--EKGRARVRMP------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
             L  E+  A    P      R LIL PTREL+ QV  +F  Y ++  LT  L+ GG+  
Sbjct: 61  HQLMAEQLTANATEPTAKKQIRALILTPTRELSQQVHKSFVTYSEDSELTSELVYGGVSI 120

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q K L +GAD+L+ TPGR+LD  +R  L +  +E +V DEADRMLDMGF+  I+ I  
Sbjct: 121 NPQVKALVQGADILVATPGRLLDLLDRETLTLEFVEKIVFDEADRMLDMGFMEEIRRILK 180

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +P  RQT+LFSAT  D + K+S++ L +P  +EV+T ++ AE +E    A      +K 
Sbjct: 181 HLPKKRQTMLFSATFDDAIFKLSKSLLNDPLLVEVDTRNAAAEQVEQIVYA--VDNDRKR 238

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L   L+ S++     +IF   K+   +L   + K G    A+HG+  Q +R + L +FK
Sbjct: 239 ELTSYLIGSRN-WHQVLIFTRTKQGADSLAKEMCKDGIKTIAVHGDKSQGARERGLEDFK 297

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G ++ +VA+D+AARGLDI  + HV NF++P +AE+YIHRIGRTGRAG  G A +LV+  
Sbjct: 298 NGKVRALVATDVAARGLDIEQLKHVINFELPFKAEDYIHRIGRTGRAGLSGTATSLVSIG 357

Query: 353 DIKHIDAIEKLIEKKV--DWLNGDLSSLNPPLE 383
           +   ++ IE L++ ++   WL G    L+ P++
Sbjct: 358 ENWLLEEIETLLDTRLVAQWLPGYEPDLSKPVD 390


>gi|303228490|ref|ZP_07315321.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516848|gb|EFL58759.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 523

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 147/366 (40%), Positives = 229/366 (62%), Gaps = 6/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L +S  V+ A+ D G+ +PTPIQ + IP+ +   D+ G AQTGTGKTA+F LP   +
Sbjct: 5   FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLP---V 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+     R  + +IL PTRELA QVA+   K  +  ++T   + GG     Q + L++ 
Sbjct: 62  LERVDGSNRHVQVVILSPTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQFRALKKN 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++DH +RG +   +++I+V+DEAD ML+MGF+  I  I   +P   QTLL
Sbjct: 122 PQIIVATPGRLMDHMDRGSIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPEDHQTLL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +++++E +L  P  I +     T + IE  ++    Q  +K  +L +L   Q
Sbjct: 182 FSATMPKAIRELAETYLTEPTLIRMKPTQVTMDLIEQYYIEV--QDRQKFDVLCRLFDLQ 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  IIF   K+ V  +  +L+K+G+    IHG++ Q+ R  ++  F+EGTI ++VA+
Sbjct: 240 -APELAIIFTRTKRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVAT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y HR+GRTGRAG+ G+A+T V   +I+H+ AIE+
Sbjct: 299 DVAARGLDISGVSHVYNYDLPQDPESYTHRVGRTGRAGKAGEAYTFVIPREIEHLHAIER 358

Query: 363 LIEKKV 368
           L ++K+
Sbjct: 359 LTKRKI 364


>gi|114329100|ref|YP_746256.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
 gi|114317274|gb|ABI63334.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
          Length = 402

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 159/399 (39%), Positives = 237/399 (59%), Gaps = 11/399 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+  ++ A+  A + KPTPIQ   IP +L+  D+ GIAQTGTGKTA+F LP+L  
Sbjct: 6   FDSFGLAEPILQALQAASFHKPTPIQAGAIPPLLEGRDLLGIAQTGTGKTAAFSLPLLQH 65

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L + R R R    R LIL PTRELA Q+ DN    G    +   L++GG+  + Q ++++
Sbjct: 66  LMQKRERPRAFSTRALILAPTRELAVQIDDNLRMLGGELPIRRVLILGGVGRKPQVQRMQ 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGAD++I TPGRI D  +  +LL++ +   V+DEADRMLD+GF+  I+ + + +P  RQ+
Sbjct: 126 RGADIVIGTPGRICDLMSTNELLLDQVSHFVLDEADRMLDLGFMRDIRKVLASLPEKRQS 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLL 239
           LLFSATM  E+ +++E  L+NP R+ +     T + I +H     + + + K  LL +LL
Sbjct: 186 LLFSATMPGEIGRLAEGLLRNPARVRIAVEEPTPDRIAQHVH---FIESTGKRVLLTRLL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +  ++  I+F   K     +   LE+ G    AIHGN  Q +R + L  F+ G  +++
Sbjct: 243 ADR-ALEKVIVFTRTKHGANRVAEHLEESGIPADAIHGNKSQNARQRALERFRSGEARVL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV NF++PN  E+Y+HRIGRT RAG+ G A +     +   + A
Sbjct: 302 VATDIAARGIDVAGVSHVVNFELPNEPESYVHRIGRTARAGQRGIAISFCDGSERPFLKA 361

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           IEKL   K+    G  S L  P E  +  +   AR++ P
Sbjct: 362 IEKLTRVKMSVAGGVESDL--PAE--EPRKQPQARRHRP 396


>gi|332525252|ref|ZP_08401425.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332108534|gb|EGJ09758.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 520

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 149/364 (40%), Positives = 223/364 (61%), Gaps = 13/364 (3%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR----- 69
           AV DAGY  PT +Q + IP  L   D+   + TG+GKTASFVLP LT +   R       
Sbjct: 8   AVADAGYTTPTEVQSRAIPPALGGADLMVSSSTGSGKTASFVLPALTRILAARGDGKRRE 67

Query: 70  ---VRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADV 125
              V  PR L+L PTRELA QVA     YG++   L VA ++GG+P+ AQ K L    DV
Sbjct: 68  KGVVSGPRILVLAPTRELAMQVAKATNDYGRHVQGLRVATIVGGVPYGAQLKALRGPLDV 127

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           LI TPGR++DH   G+ ++ N+E+LV+DEADRMLDMGFI  I +I S  P  RQT+++SA
Sbjct: 128 LIATPGRLMDHMASGRAVLANVEMLVLDEADRMLDMGFIDDIHHIASATPAARQTVMYSA 187

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQQLLQSQDT 244
           T    + +++E  L+ P+RIE+ + +     IE      +A  ++ K ALL  +L ++ +
Sbjct: 188 TFAGHVGRLAEELLREPQRIEIASHTDVHADIEQRL--HWADNFAHKNALLDHIL-TERS 244

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
           ++  ++F + +++   L   L + G  V ++HG   Q  R ++L   +   ++++VA+D+
Sbjct: 245 VEQAVVFTSTQRDADWLADRLAEMGHHVASLHGGHPQGRRNRVLQGLRSRDLKILVATDV 304

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           AARG+D+P + HV NF +P +AE+Y+HRIGRTGRAGR G A TL  + D   I  I++  
Sbjct: 305 AARGIDVPTISHVINFGLPMKAEDYVHRIGRTGRAGRSGLAVTLAERGDAGMIHRIQRFT 364

Query: 365 EKKV 368
            +++
Sbjct: 365 TQRI 368


>gi|317488345|ref|ZP_07946905.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
 gi|325830722|ref|ZP_08164106.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
 gi|316912552|gb|EFV34101.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
 gi|325487129|gb|EGC89572.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
          Length = 443

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 160/419 (38%), Positives = 244/419 (58%), Gaps = 20/419 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS   + AV   G+  PTP+Q + IPLVL+  DV   A TGTGKTA+F LP+   
Sbjct: 34  FQDLGLSETTLSAVERMGFTAPTPVQEQAIPLVLEGRDVVAAATTGTGKTAAFALPLFER 93

Query: 63  LEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  GRA R   PR L++ PTRELA Q+     +  K  N  +  ++GG  ++ Q  KL+R
Sbjct: 94  I--GRAKRPGSPRALVVSPTRELAQQIDAACTQLAKASNRRMLTVMGGTKYKGQIAKLDR 151

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVL+ TPGR+ D   RG + + ++E+LV+DEADRMLDMGF P ++ + +  P +RQTL
Sbjct: 152 GIDVLVATPGRLYDLMERGVVKLRDVEVLVLDEADRMLDMGFWPTMKKVVAATPSSRQTL 211

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ +   + L++P  +EV+    TA+TI+   +       KK  LL+ +LQ 
Sbjct: 212 LFSATLDRKVMQSVSSILKDPAFVEVSHKGETADTIDQFMIPVGPM--KKPELLRLVLQQ 269

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + + K  I+F + K         L++ GF   +IH +  Q  R + L  F +G I ++VA
Sbjct: 270 RGS-KRVIVFTDTKTRAEICTGQLKRAGFRADSIHSDKTQVQRKRALEGFSKGAIDVLVA 328

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+ ++ +V N+D+P   E+Y+HRIGRTGRAG  G A + V+ E    +  IE
Sbjct: 329 TDVLARGIDVSNIEYVVNYDLPESPEDYVHRIGRTGRAGETGYAISFVSPEAKAQLLDIE 388

Query: 362 KLIEKKVDWLNGD----------LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           KL+ +++  L+ D          L+S   P   +  A  + + + N     ++GF RR+
Sbjct: 389 KLLGERIPTLDIDGYDATEAEKALASQFVPKATVGSAAFSRSLRRN----GASGFGRRR 443


>gi|87310556|ref|ZP_01092685.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
 gi|87286777|gb|EAQ78682.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
          Length = 447

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 152/363 (41%), Positives = 219/363 (60%), Gaps = 5/363 (1%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE--K 65
           LS  +  A+    Y  PTPIQ + IP +L+  D+ G AQTGTGKTA+F LP+L  L+  +
Sbjct: 3   LSEAIQEALATEKYHTPTPIQGQAIPHLLEGSDLIGCAQTGTGKTAAFALPILNQLDLDR 62

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
            RA    P+ L+L PTRELA Q+A +F  YG+N    +  + GG+    Q + L+RG  V
Sbjct: 63  SRADACAPQVLVLSPTRELAVQIAQSFNVYGRNVKFRLTTIFGGVGQNPQVRALKRGVHV 122

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
            I TPGR+LD  ++G + ++  +  V+DEADRMLDMGF+P ++ I S +P  RQT+ F+A
Sbjct: 123 AIATPGRLLDLMDQGYVDLSQAKTFVLDEADRMLDMGFMPALKTIVSKLPKQRQTIFFTA 182

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           TM  ++ +++   L NP RIEV   S+TAE +E   +  Y     K ALL+  LQ++   
Sbjct: 183 TMPPKVAQLASGLLNNPVRIEVAPESTTAERVEQRLM--YVSQGDKRALLEHSLQAEGVG 240

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
           +  ++F   K     L   L   G    AIHGN  Q  R + L +F+ G +Q++VA+D+A
Sbjct: 241 RT-LVFTKTKHGADRLAKELNASGIRTDAIHGNKTQNKRNRALESFRSGRLQVLVATDVA 299

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARG+D+  V HV NFD+P   E+Y+HRIGRTGRAG+ G A +     +   + AIE+LI 
Sbjct: 300 ARGIDVDGVTHVVNFDLPIDPESYVHRIGRTGRAGKEGIALSFCDFSEHGTLRAIERLIR 359

Query: 366 KKV 368
             +
Sbjct: 360 TTI 362


>gi|328955216|ref|YP_004372549.1| DEAD/DEAH box helicase domain protein [Coriobacterium glomerans
           PW2]
 gi|328455540|gb|AEB06734.1| DEAD/DEAH box helicase domain protein [Coriobacterium glomerans
           PW2]
          Length = 618

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 153/375 (40%), Positives = 223/375 (59%), Gaps = 11/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F DLGL   ++ AV    Y  PTP+Q  +IP VL + D+   AQTGTGKTA+F+LP ++ 
Sbjct: 59  FEDLGLPDIILKAVRGLHYTTPTPVQAASIPSVLAKRDILAAAQTGTGKTAAFLLPAMSN 118

Query: 62  ---ILEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
              ++ +GR+R     R P+ LI+ PTRELA Q+     +           ++GG+ +  
Sbjct: 119 LGHVVHQGRSRRSAEGRGPKMLIITPTRELAQQIDSVCTQIATRTKHIAVTVVGGVGYNP 178

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L RG D+L+ TPGR++D  ++G   ++ +EILVIDEADRMLDMGF+P ++ I +L 
Sbjct: 179 QKSALRRGCDILVATPGRLIDLIDQGVCNLSEVEILVIDEADRMLDMGFLPSVKQIVALT 238

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQTLLFSAT+ ++      + +++P R+E+   +STA+T++  FV   +  SK   L
Sbjct: 239 PPERQTLLFSATLDEKTLGSIRDLVRDPVRVEIAAATSTADTVDQ-FVLPVSFDSKNDVL 297

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           ++ L   ++     I+F   K    + C  L   G S  AIHG+  Q  R + L  F++G
Sbjct: 298 VEVL--KREGASRVIVFMRTKHRADSCCRRLTHAGISAAAIHGDRSQAQRERALKAFRDG 355

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+ ARG+DI DV +V NFDVP    +YIHRIGRTGRAG  G A T V ++DI
Sbjct: 356 RSDVLVATDVIARGIDISDVRYVVNFDVPGEPIDYIHRIGRTGRAGEVGWALTFVTRQDI 415

Query: 355 KHIDAIEKLIEKKVD 369
                IE L+ K  +
Sbjct: 416 DEFYDIESLMGKTAE 430


>gi|254672936|emb|CBA07321.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis alpha275]
          Length = 489

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 151/371 (40%), Positives = 234/371 (63%), Gaps = 8/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +K  LL++
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTFQKRNLLER 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKV 368
           ++I++L   K+
Sbjct: 362 ESIKELTGNKL 372


>gi|315604272|ref|ZP_07879338.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313978|gb|EFU62029.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 699

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 152/370 (41%), Positives = 216/370 (58%), Gaps = 14/370 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL  +++ A+ D G+  PTPIQ   IP +L+  DV GIAQTGTGKTA+F LP+L I
Sbjct: 39  FASLGLPDEILAAITDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLLAI 98

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121
           ++   A  R  + L+L PTRELA Q A   E +  +   L V  + GG P+  Q   L+R
Sbjct: 99  VD---ADERDVQALVLAPTRELAMQSAQAIEDFAARAARLDVVPVYGGSPYGPQIGALKR 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++D   +G L ++N+ +LV+DEAD ML MGF   ++ I S VP  R T 
Sbjct: 156 GAQVVVGTPGRVIDLIEKGALDLSNVRMLVLDEADEMLRMGFAEDVETIASAVPAQRLTA 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL------ 235
           LFSATM   ++KV+   L++P ++ V+T SST +TI   +      Y  K   L      
Sbjct: 216 LFSATMPAAIEKVAREHLKDPVKVAVSTESSTVDTIHQTYAVV--PYKHKIGALCRVLAT 273

Query: 236 --QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
             Q + + Q+     I+F   + +V  +   L  +GF    I G++ Q  R +++   K 
Sbjct: 274 RAQHIARGQEEADAAIVFVRTRADVEEVSLELSARGFRAAGISGDVAQTERERMVERLKT 333

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G + ++VA+D+AARGLD+  +  V NFDVP   E Y+HRIGRTGRAGR G+A T     +
Sbjct: 334 GALDVLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTGRAGRQGRALTFFTPRE 393

Query: 354 IKHIDAIEKL 363
              +  IEKL
Sbjct: 394 HGRLRRIEKL 403


>gi|187931511|ref|YP_001891495.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|187712420|gb|ACD30717.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 569

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 146/363 (40%), Positives = 228/363 (62%), Gaps = 5/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGL+  ++  V+  GY  PTPIQ   IP +L   DV G AQTGTGKTA+F LP++ 
Sbjct: 8   DFSQLGLNQDIIDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++   +R R P+ L+L PTRELA QVA+ FE + KN  NL VA + GG  + +Q + L+
Sbjct: 68  NMDLA-SRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ T GR++DH  +G L ++N+  LV+DEAD ML MGFI  ++ + S V    Q 
Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQCQR 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++  + E +L+NP +I+V   + TA T+   F+       +K   L +LL+
Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKG--FRKIDALDRLLE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++T    IIF   K + + +  +L+  G+ V AI+G++ Q  R  I+  F+     ++V
Sbjct: 245 TEET-DGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+  + HV N+D+PN  + Y+HRIGRTGRAGR G + +LV  ++++ +  +
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363

Query: 361 EKL 363
           E+ 
Sbjct: 364 ERF 366


>gi|221133986|ref|ZP_03560291.1| ATP-dependent RNA helicase [Glaciecola sp. HTCC2999]
          Length = 622

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 149/374 (39%), Positives = 232/374 (62%), Gaps = 11/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L  +++ A+   GY  P+PIQ ++IPL+L+ HD+ G AQTGTGKTA+F LPML
Sbjct: 7   MTFKDLNLPSEILQALEKVGYETPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPML 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
             ++   +    P+ L+L PTRELA QVA+ F+ Y   +  + V  + GG  ++ Q ++L
Sbjct: 67  ANIDVEES---FPQLLVLAPTRELAIQVAEAFQVYASFSKKIRVLPIYGGQSYDNQIRQL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGR++DH  R  L ++ ++ LV+DEAD ML MGFI  ++ I S  P  +Q
Sbjct: 124 KRGVQVVVGTPGRVIDHIQRKTLKLDRLKFLVLDEADEMLRMGFIDDVELILSHSPKEKQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQ 237
           T LFSATM   ++K++E +L  PK +++ +  STA TI   +C VA +     K   L +
Sbjct: 184 TALFSATMPGPIKKITERYLHEPKHVKIASKVSTASTIRQRYCQVAGH----HKLEALTR 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+ +      I+F   K   + L   L  +G+ V  ++G+I Q+SR + +   K G+I 
Sbjct: 240 ILEVEQ-FDGVIVFVRTKTATLELADKLSARGYDVEPLNGDIPQKSRERTVERLKSGSID 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+ ARGLD+  V HV NFD+P   E+Y+HRIGRTGRAGR G A   ++  + + +
Sbjct: 299 ILIATDVVARGLDVERVSHVINFDIPYDTESYVHRIGRTGRAGRQGDAILFISHREKRLL 358

Query: 358 DAIEKLIEKKVDWL 371
             IEK  ++ ++ +
Sbjct: 359 FQIEKTTKQSIEQM 372


>gi|300742137|ref|ZP_07072158.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
 gi|300381322|gb|EFJ77884.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
          Length = 719

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 151/375 (40%), Positives = 231/375 (61%), Gaps = 9/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL P+V+ A+ + GY KP+PIQ +TIP +L  +DV G+AQTGTGKTA+F LP L+ 
Sbjct: 130 FTDLGLDPRVLSALEEVGYEKPSPIQEQTIPPLLDGNDVVGLAQTGTGKTAAFALPALSR 189

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
              L       R  + L+L PTRELA QVA+ F  Y  +  + TV  + GG P+  Q   
Sbjct: 190 MAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAG 249

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RGA V++ TPGR++DH  +G L ++N++ LV+DEAD ML MGF   ++ I    P  +
Sbjct: 250 LRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVETILEGTPDAK 309

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q  LFSATM + ++K+++ +L +P  + V T ++T   I   ++     +S K   + ++
Sbjct: 310 QVALFSATMPNSIRKIAQQYLNDPTEVRVKTKTTTGANIRQRYMQVM--HSHKLDAMTRV 367

Query: 239 LQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ ++   +GII F   KK    +   L+ +GF   AI+G+I Q+ R + +   ++G I 
Sbjct: 368 LEVENY--DGIIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRID 425

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  +  V N+D+P+  E+Y+HRIGRTGRAGR G+A   V   +   +
Sbjct: 426 ILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRDGEAILFVTPREKYML 485

Query: 358 DAIEKLIEKKVDWLN 372
             IEK   +KV+ ++
Sbjct: 486 RQIEKATRQKVEPMH 500


>gi|300721544|ref|YP_003710819.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus
           nematophila ATCC 19061]
 gi|297628036|emb|CBJ88585.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus
           nematophila ATCC 19061]
          Length = 649

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 145/368 (39%), Positives = 233/368 (63%), Gaps = 11/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 7   ISFADLGLSAPILSALGDMGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFTLPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117
             +    A ++ P+ L+L PTRELA QVA+   +F K+ ++ N  V  L GG  ++ Q +
Sbjct: 67  HNIN---AELKAPQILVLAPTRELAVQVAEACSDFSKHMRSVN--VVALYGGQRYDVQLR 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +G  +++ TPGR+LDH  RG L ++N++ LV+DEAD ML MGFI  ++NI S +P  
Sbjct: 122 ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPAE 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            QT LFSATM + +++++  F+ +P+ + + +  +    I   + + Y    +K   L +
Sbjct: 182 HQTALFSATMPEAIRRITRRFMNDPQEVRIQSSVTNRPDISQSYWSVYG--VRKNEALVR 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L+++D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K G + 
Sbjct: 240 FLEAED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQTLREQTLERLKNGRLD 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +
Sbjct: 299 ILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLL 358

Query: 358 DAIEKLIE 365
             IE+ ++
Sbjct: 359 RNIERTMK 366


>gi|152981099|ref|YP_001355159.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151281176|gb|ABR89586.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 778

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 151/371 (40%), Positives = 223/371 (60%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL LS  ++  + + GY  P+PIQ  TIPL+L   DV G AQTGTGKTASF LP+L  
Sbjct: 9   FADLKLSEPLLRVLQELGYESPSPIQAATIPLLLNNRDVLGQAQTGTGKTASFALPILAR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++    +   P+ L+L PTRELA QVA+ F++Y        V  + GG  + AQ   L R
Sbjct: 69  ID---IKQTTPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQLSALRR 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  +G L ++ I+ +V+DEAD ML MGFI  ++ I    P +RQT 
Sbjct: 126 GVHVVVGTPGRVIDHLEKGSLDLSRIKTMVLDEADEMLRMGFIDDVETILQKTPESRQTA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +++++  +L++P  I V   + TA+ I   +        +K   L ++L++
Sbjct: 186 LFSATMPSAIKRIATTYLRDPDLITVAAKTGTADNIRQRYWLVSGM--QKLDALTRILEA 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++     IIF   K     L   L+ +GFS  AI+G+I Q+ R + +   K+G I ++VA
Sbjct: 244 EN-FDGMIIFARTKLGTEELASKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDILVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+DVP+  E+Y HRIGRTGRAGR G+A   +A  +   + AIE
Sbjct: 303 TDVAARGLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPRERNLLKAIE 362

Query: 362 KLIEKKVDWLN 372
           +   + +  L 
Sbjct: 363 RATRQPISVLE 373


>gi|88857449|ref|ZP_01132092.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family protein [Pseudoalteromonas
           tunicata D2]
 gi|88820646|gb|EAR30458.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family protein [Pseudoalteromonas
           tunicata D2]
          Length = 435

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 150/366 (40%), Positives = 234/366 (63%), Gaps = 5/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F     +P+++ A+ + GY + +P+Q   IP V + HDV   AQTGTGKTA+F LP+L
Sbjct: 1   MNFKSFSFAPEILRAIDECGYTELSPVQRLAIPHVRRGHDVLANAQTGTGKTAAFALPIL 60

Query: 61  -TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +++    RV    + L+L PTRELA Q+A++FE+YGK  +++VA + GG+  + Q  K
Sbjct: 61  QKLIDTPTPRVASNAKALVLAPTRELAEQIANSFERYGKYLDISVAAIFGGVSHKGQAIK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ GAD+++ TPGR+L+H     + ++N+  LV+DEADRMLDMGFI  I+ + + V   R
Sbjct: 121 LKAGADIIVATPGRLLEHIQMCNVSLSNVSFLVLDEADRMLDMGFINDIKMLMAAVNDER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    +++ S + L+ PK ++    +STAET++H  V    +  +K  LL +L
Sbjct: 181 QTLLFSATYPSSMKQFSASVLKQPKIVQATKDNSTAETVQH--VVYPVEERRKNELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  ++     ++F N K+   ++   L + G S    HG+  Q +R + L  FKEG +++
Sbjct: 239 IGRKN-WHQVLVFVNMKETASSVVEELNQFGISAAVCHGDKTQGARRRALREFKEGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDI  +  V N D+P  AE+Y+HRIGRTGRAG  G+A + V++E+   + 
Sbjct: 298 LVATEVAARGLDIVGLERVINVDLPFLAEDYVHRIGRTGRAGNIGQAVSFVSREEEHTLA 357

Query: 359 AIEKLI 364
            IE LI
Sbjct: 358 NIEALI 363


>gi|254507177|ref|ZP_05119314.1| superfamily II DNA and RNA helicase [Vibrio parahaemolyticus 16]
 gi|219549887|gb|EED26875.1| superfamily II DNA and RNA helicase [Vibrio parahaemolyticus 16]
          Length = 388

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 156/373 (41%), Positives = 222/373 (59%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +  A+   GY KPT IQ K IP +LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MPFAKLGLSQPLTQAIQSLGYSKPTTIQTKAIPAILQGDDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L KG   R +  R LIL PTRELA Q+      YG+N +LT   + GG+  + Q + L
Sbjct: 61  EKLAKGETQRKKRVRALILTPTRELAQQIEQKVRDYGQNLSLTSLAMYGGVDEKPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+LI TPGR+LD + +  +    IE+LV+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IEGVDILIATPGRLLDMYGKRAVHFEEIEVLVMDEADRMLDMGFIDDINKILDRLPTDIQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++++++ +++  + +P  I +    ++ + IE   +       KK ALL  ++
Sbjct: 181 HLLFSATLSNKVRDLAKTAVHDPFEISIAANQASKKNIEQWLITV--DKDKKSALLSHMI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++     +IF   K     L   LEK+G    A H    Q  R K+L++FK G I+ M
Sbjct: 239 K-ENNWDQALIFIETKHGAAKLASQLEKRGIEAEAFHSGRSQAVRSKLLADFKAGKIKYM 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ + ARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 IATGVGARGIDIEGLTRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFKNLCM 357

Query: 360 IEK----LIEKKV 368
           IE     LIE++V
Sbjct: 358 IEARLGHLIERRV 370


>gi|299066924|emb|CBJ38119.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
           RNA helicase(C-terminal) (rhlE-like) [Ralstonia
           solanacearum CMR15]
          Length = 613

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 150/385 (38%), Positives = 230/385 (59%), Gaps = 23/385 (5%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE- 64
           LGL  ++  A+ +  Y +PTP+Q + IP  L   D+   +QTG+GKTA+F+LP +  +  
Sbjct: 35  LGLDERIARALGELNYTQPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFMLPAIQRISE 94

Query: 65  ------------KGRARVRMPRT-------LILEPTRELAAQVADNFEKYGKNYNLTV-A 104
                       + R + R PR        L+L PTRELA QV     +YG++    V A
Sbjct: 95  QPEPQRPRADGPQQRVKGRRPRPEPAKPSLLVLTPTRELALQVTTATAQYGRHLRRIVCA 154

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
            ++GG+P+  Q   L R  D++I TPGR+LDH + G++ ++ +++LV DEADRMLDMGF 
Sbjct: 155 SILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFA 214

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
             I+ I    P +RQ L+FSATM   +++++E  ++ P+RIE+         IE     T
Sbjct: 215 DDIEAIVGATPASRQMLMFSATMDRRIEQLAERMMREPQRIEIAAAKVDQSNIEERLHFT 274

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
               S K  LL  LL+   T+K  I+F   K++  +L   L + GFS  A+HG++ Q +R
Sbjct: 275 -DDLSHKQQLLDHLLRDA-TLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQGAR 332

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + L+  + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR G 
Sbjct: 333 NRTLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGI 392

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVD 369
           A  LV   D      IE+ +++++D
Sbjct: 393 AINLVNHGDTFQWRRIERFVDRRID 417


>gi|295692132|ref|YP_003600742.1| ATP-dependent RNA helicase [Lactobacillus crispatus ST1]
 gi|295030238|emb|CBL49717.1| ATP-dependent RNA helicase [Lactobacillus crispatus ST1]
          Length = 494

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 155/396 (39%), Positives = 244/396 (61%), Gaps = 16/396 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+  ++ A+  +G+ + TPIQ +TIPL LQ  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++K    ++    +I+EPTRELA Q  +   + G++ +  V ++ GG     Q + L+
Sbjct: 61  QMIDKKEKAIQ---AVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLK 117

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LDH  R  + ++ ++ +V+DEAD MLDMGFI  I++I       +Q
Sbjct: 118 HHVPSILVGTPGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + ++ E F+ +PK + +     TA+ IE  FV   A+ S+K  ++ +L+
Sbjct: 178 TLLFSATMPKPILRIGEKFMDHPKIVRIKAKELTADLIEQYFV--RAKESEKFDIMCRLI 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      ++F   K+ V  L   L+ +G++   IHG++ Q  RM +L  F+EG + ++
Sbjct: 236 DVQGP-DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           IE+L +KK       +S L PP +  D A H   ++
Sbjct: 355 IEQLTKKK-------MSPLRPPTD--DQALHGQLKQ 381


>gi|148272405|ref|YP_001221966.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830335|emb|CAN01269.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 586

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 147/362 (40%), Positives = 226/362 (62%), Gaps = 9/362 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGLS +V+ A+ D GY  P+ IQ  TIP +L   DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 20  FSDLGLSDQVLKALKDVGYETPSAIQAATIPSLLSGRDVLGVAQTGTGKTAAFALPILSN 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+  +   + P+ L+L PTRELA QV + FE+Y      + V  + GG  +  Q   L R
Sbjct: 80  LDVSQ---KTPQALVLAPTRELALQVCEAFERYASGMRGVHVLPVYGGQGYGVQLSALRR 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGRI+DH ++G L ++ ++ LV+DEAD ML MGF   ++ I +  P ++Q  
Sbjct: 137 GVHVVVGTPGRIMDHLDKGTLDLSQLKFLVLDEADEMLKMGFAEDVETILADTPKSKQIA 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSATM  +++++S  +LQ+P+ I V N  +++A T +   + +Y Q   K   L ++L+
Sbjct: 197 LFSATMPAQIRRISGKYLQDPEEITVKNKTTTSANTTQRYLMVSYPQ---KVDALTRILE 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++  +  I+F   K     L   L  +G++  AI G++ Q  R + +   K G + ++V
Sbjct: 254 TEN-FEGMIVFVRTKNETETLAEKLRARGYAAAAISGDVAQAQRERTVEQLKNGKLDILV 312

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A + V   + + + AI
Sbjct: 313 ATDVAARGLDVDRISHVVNYDIPIDTESYVHRIGRTGRAGRSGAAISFVTPRERRLLTAI 372

Query: 361 EK 362
           EK
Sbjct: 373 EK 374


>gi|72161844|ref|YP_289501.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Thermobifida fusca YX]
 gi|71915576|gb|AAZ55478.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Thermobifida fusca YX]
          Length = 562

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 148/362 (40%), Positives = 219/362 (60%), Gaps = 5/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL P+++ A+ + GY +PT IQ + IP +L+  D+ G A TGTGKTA+F LP+L  
Sbjct: 12  FADLGLRPELLDALAEVGYEEPTAIQREAIPSLLEGRDLLGQAATGTGKTAAFSLPILHR 71

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     R   P  LIL PTRELA QV++   +YG++    +  + GG P   Q + LERG
Sbjct: 72  LPDS-DRGDTPSALILVPTRELALQVSEALHRYGRHLKARILPIYGGQPIGRQLRALERG 130

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR LDH  RG L+++ +  +V+DEAD MLDMGF   I+ I   VP  RQT+L
Sbjct: 131 VDVVVATPGRALDHIGRGTLVLDTVRTVVLDEADEMLDMGFAEDIEAIIEEVPENRQTVL 190

Query: 183 FSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           FSATM D ++ ++   L +P R+ +   +P+   E          A+  K  AL + L  
Sbjct: 191 FSATMPDRIEGIARRHLTDPVRVRIARTSPAPGEEPKVRQNAYIVARPYKPAALGRVL-- 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             ++    ++FC  ++ V  L  +L  +G+   A+HG + Q  R ++++  + GT  L++
Sbjct: 249 DMESPTAALVFCRTREEVDQLTETLNARGYRAEALHGGMSQEQRDRVMARLRGGTADLLI 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + HV N++VP+  E Y+HRIGR GRAGR G A TLV   + + +  I
Sbjct: 309 ATDVAARGLDIEHLTHVVNYNVPSATETYVHRIGRVGRAGREGVAITLVEPREHRMLKTI 368

Query: 361 EK 362
           ++
Sbjct: 369 QR 370


>gi|261856513|ref|YP_003263796.1| DEAD/DEAH box helicase [Halothiobacillus neapolitanus c2]
 gi|261836982|gb|ACX96749.1| DEAD/DEAH box helicase domain protein [Halothiobacillus
           neapolitanus c2]
          Length = 594

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 145/361 (40%), Positives = 226/361 (62%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L+  ++ +V + GY  P+PIQ K+IP++L+  DV G+AQTGTGKT +F LP+L+ 
Sbjct: 9   FSDFALAAPLLRSVEELGYESPSPIQAKSIPVLLEGKDVLGMAQTGTGKTGAFALPLLSR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     +R P+ L+L PTRELA QVA+  + Y ++  +  V  + GG   E Q + L+R
Sbjct: 69  ID---INLRAPQLLVLAPTRELAIQVAEAMQAYARHLPDFHVLPVYGGQAMEPQLRGLKR 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGRI DH  RG L +N I+ +V+DEAD ML MGFI  +  I S  P  RQ  
Sbjct: 126 GVHVVVGTPGRIQDHIKRGTLKLNQIQAVVLDEADEMLRMGFIDDVDEILSKTPANRQVA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D+++++++  L+NP  I + + +ST + I   + A    +  K   L ++L+ 
Sbjct: 186 LFSATMPDQIRRIAQRHLRNPVEIAIKSSTSTVKAINQRYWAVSGMH--KLDALTRILEV 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++     IIF   K     L   LE +G++   ++G+++Q  R K +   K G++ +++A
Sbjct: 244 EE-FDAVIIFVRTKVATTELAEKLEARGYAASPLNGDMNQAMREKAIDRLKRGSLDIIIA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+  V HV N+D+P   E+Y+HRIGRTGRAGR G+A   VA  + + + AIE
Sbjct: 303 TDVAARGIDVARVSHVVNYDIPLDTESYVHRIGRTGRAGRSGEAILFVAPREKRMLGAIE 362

Query: 362 K 362
           +
Sbjct: 363 R 363


>gi|227894493|ref|ZP_04012298.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus ultunensis
           DSM 16047]
 gi|227863652|gb|EEJ71073.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus ultunensis
           DSM 16047]
          Length = 496

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 151/384 (39%), Positives = 238/384 (61%), Gaps = 14/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+  ++ A+  +G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++K    ++    +I+EPTRELA Q  +   + G++    V ++ GG     Q + L+
Sbjct: 61  QTIDKKEKAIQ---AIIIEPTRELAIQTQEELFRLGRDERAHVQVVYGGADIGRQIRSLK 117

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LDH  RG + ++ ++ +V+DEAD MLDMGFI  I++I       +Q
Sbjct: 118 HHVPSILVGTPGRLLDHLKRGTIDLDKVKTVVLDEADEMLDMGFIQDIESILKYAKNRKQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + ++ E F+ NP+ +++     TA+ I+  FV   A+ S+K  ++ +L+
Sbjct: 178 TLLFSATMPKPILRIGEKFMNNPEIVQIKAKELTADLIDQYFVR--AKESEKFDIMCRLI 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      ++F   K+ V  L   L+ +G++   IHG++ Q  RM +L  F+EG + ++
Sbjct: 236 DVQGP-DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMTVLKRFREGKLDIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE 383
           IE+L +KK       +S L PP +
Sbjct: 355 IEQLTKKK-------MSPLRPPTD 371


>gi|300933595|ref|ZP_07148851.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
          Length = 779

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 143/361 (39%), Positives = 229/361 (63%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL+ +V+ AV   G+  P+PIQ +TIP++++ +DV G+AQTGTGKTA+F LP+L  
Sbjct: 113 FDNLGLTSEVLEAVKKVGFEAPSPIQEQTIPVLMEGNDVVGLAQTGTGKTAAFALPILAR 172

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ L+L PTRELA QVA++FE +  +   + V  + GG  +  Q   L R
Sbjct: 173 IDPSK---RHPQALVLAPTRELALQVAESFESFATHLGGIHVLPIYGGQAYGIQLSGLRR 229

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH N+G L ++ +  +V+DEAD ML+MGF   ++ I    P  +Q  
Sbjct: 230 GAHIVVGTPGRVIDHLNKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPEDKQVA 289

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++S+ +L +P+ I V +   T+E IE  ++  +  +  K   L ++L+ 
Sbjct: 290 LFSATMPAGIRRLSKQYLNDPQEITVKSTQRTSENIEQDYL--FVNHRNKLEALTRILEV 347

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  I+F   K     L   L  +GF+  AI+G+I Q  R + +   K+G + ++VA
Sbjct: 348 TE-FEAMIMFVRTKNETEELAERLRARGFNAAAINGDIAQAQRERTVDQLKDGRLDILVA 406

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HVFN+D+P+  E+Y+HRIGRTGRAGR G+A   V   + + + AIE
Sbjct: 407 TDVAARGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAGRSGRAILFVTPRERRLLKAIE 466

Query: 362 K 362
           +
Sbjct: 467 R 467


>gi|329666667|gb|AEB92615.1| putative RNA helicase [Lactobacillus johnsonii DPC 6026]
          Length = 479

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 150/383 (39%), Positives = 236/383 (61%), Gaps = 15/383 (3%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           + L P+++ A+  +G+ + TPIQ KTIPLVL+  DV G AQTGTGKTA+F LP+L  L+K
Sbjct: 1   MNLKPEILKAIKRSGFEEATPIQEKTIPLVLEEKDVIGQAQTGTGKTAAFGLPILQNLDK 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
               ++    +I+EPTRELA Q  +   + G++    V ++ GG     Q + L++   +
Sbjct: 61  QHDSIQ---AIIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALKQTPAI 117

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           L+ TPGR+LDH  RG + ++ ++ +V+DEAD MLDMGFI  I++I        QTLLFSA
Sbjct: 118 LVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILKYASSKHQTLLFSA 177

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           TM   + ++ E F+ +P+ +++     TA  I+  FV   A+ ++K  +L +L+  Q+  
Sbjct: 178 TMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFV--RAKENEKFDILCRLIDVQNP- 234

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              +IF   K+ V  L   L+ +G++   IHG++ Q  RM +L  F++G + ++VA+D+A
Sbjct: 235 DLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVA 294

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  IE+L  
Sbjct: 295 ARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTIEQLTH 354

Query: 366 KKV---------DWLNGDLSSLN 379
           KK+         +   G LS+ N
Sbjct: 355 KKMMPLKPPTDEEAFKGQLSAAN 377


>gi|90577462|ref|ZP_01233273.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90440548|gb|EAS65728.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 432

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 161/411 (39%), Positives = 244/411 (59%), Gaps = 11/411 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G S  +V A+ + GY K TP+Q K IP   +  D+  +AQTGTGKTA+F LP++
Sbjct: 1   MSFLSQGFSQDLVKALTEIGYEKLTPVQQKAIPQARRGADILALAQTGTGKTAAFSLPII 60

Query: 61  T-ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             ++EK +++ R   R LIL PTRELA Q+A+N  +Y K  ++    + GG     Q K+
Sbjct: 61  QKLIEKPKSKSRFNVRALILAPTRELAEQIANNINEYAKYTDVNCTAIFGGKKMSTQEKR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE+G D+L+ TPGR+++H     + + N+E LV DEADRMLDMGFI  I+ I   +    
Sbjct: 121 LEQGVDILVATPGRLIEHMELNNVSLANLEFLVFDEADRMLDMGFIGAIRVILDDIRTKP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT + ++  ++ + L  P+RI V   +STA+TI H  V       +K  +L +L
Sbjct: 181 QTMLFSATSSAQMNSLASDILHKPQRITVTPENSTADTIAH--VVYPVDEDRKREMLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  ++  K  ++F N K+    L   L+  G      HG+  Q +R + L  FKEG  ++
Sbjct: 239 IGKKN-WKQVLVFVNYKETANQLVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+++AARGLDI ++ +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+   + 
Sbjct: 298 MVATEVAARGLDIQNLPYVVNYDMPFLAEDYVHRIGRTGRAGQKGNAISFVSREEELTLV 357

Query: 359 AIEKLIEK---KVDWLNGDLSSLNPPLEKIDIA---QHNHARKNNPIPQKS 403
            IE+LI +   +V  +  +  S +  LE++           RKNNP   +S
Sbjct: 358 QIERLIGQRIHRVQLIGYEPKSRDALLERMHSKPAFSQREGRKNNPTQDQS 408


>gi|294661382|ref|YP_003573258.1| hypothetical protein Aasi_1916 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|227336533|gb|ACP21130.1| hypothetical protein Aasi_1916 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 575

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 151/369 (40%), Positives = 226/369 (61%), Gaps = 10/369 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++GLSP +  A+    + +PT IQ K IPL LQ+ D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFQEMGLSPVLTQALDKLSFTQPTAIQAKAIPLALQQKDILGSAQTGTGKTLAFAIPLIN 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            L      +     LIL PTRELA QVA N  +   K+  +  ALLIGG P+  Q  +L 
Sbjct: 63  KLLSDPTSM----GLILTPTRELAQQVATNINQLLFKSSFIKTALLIGGEPYNKQLAQLR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR++DH  RG     +I+ L++DE DRM DMGF   ++ I S +P  RQT
Sbjct: 119 SNLRIIIGTPGRVIDHLERGSFNPKDIDFLILDETDRMFDMGFSIQLEQIVSQLPTQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
           L+FSAT   +++K++  ++Q+P+RI +N   S A   ++    +    + +K   LL QL
Sbjct: 179 LMFSATFPPKVEKLAAKYMQSPERIFMNEFDSMAIVAQNLTQEILEIKEENKYFELLTQL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              + T+   ++F   K N  +L   L K+ ++ CAIHGN+ Q  R +++  F++G  Q+
Sbjct: 239 NSREGTI---LVFVKTKDNAEHLSLRLNKEAYNTCAIHGNLRQTKRERVMRAFRQGRHQI 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLD+P V HV N+D+P+  E+Y+HRIGRT RAG  G A + V+ +D K  +
Sbjct: 296 MVATDIAARGLDVPHVKHVINYDIPHAPEDYVHRIGRTARAGAKGFALSFVSSQDRKRWN 355

Query: 359 AIEKLIEKK 367
           AI+ L+  K
Sbjct: 356 AIQDLLNPK 364


>gi|171059208|ref|YP_001791557.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170776653|gb|ACB34792.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 502

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 150/379 (39%), Positives = 235/379 (62%), Gaps = 13/379 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   ++ +V  AGY  PT +Q +TIP  LQ  D+   + TG+GKTA+FVLP L
Sbjct: 1   MTFDTLGLHEAILKSVTAAGYDTPTDVQAQTIPPALQGLDLRVCSNTGSGKTAAFVLPAL 60

Query: 61  TIL-------EKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGI 110
             +        K RA+ ++  PR L+L PTRELA QV+     YG++   L VA ++GG+
Sbjct: 61  QRVLAARNDPSKARAKGQVCGPRVLVLAPTRELAMQVSKAASTYGQHVAGLRVATIVGGV 120

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
           P+ AQ   L +  D+LI TPGR++DH N GK ++ ++E+L++DEADRMLDMGFI  I+ I
Sbjct: 121 PYPAQLAALRKPLDILIATPGRLIDHLNSGKAVLGDVEMLILDEADRMLDMGFIEDIERI 180

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYS 229
              +P  RQT++ SAT   ++ ++++  L+ + KRIE+ + +   E IE   +   +   
Sbjct: 181 AESLPQERQTVMVSATFAGQVGRLADQILKSDAKRIEITSHTDNHENIEQQLLWADS-IE 239

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            K  LL+ LL  ++ M+  ++F + +++   L   L + G +V  +HG + Q  R + L 
Sbjct: 240 HKAKLLEHLLTERE-MQQALVFTSTQRDADELAAHLYELGHAVAPLHGGMPQGRRSRTLM 298

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
             + G I++++A+D+AARG+D+P + HV NF +P +AE+Y+HRIGRTGRAGR G+A TL 
Sbjct: 299 ALRNGEIKVLIATDVAARGIDVPTISHVINFGLPMKAEDYVHRIGRTGRAGRTGRAITLA 358

Query: 350 AKEDIKHIDAIEKLIEKKV 368
            + D+  I  I++   + +
Sbjct: 359 ERRDVGMIRRIQQFTTQTI 377


>gi|88856286|ref|ZP_01130945.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
 gi|88814370|gb|EAR24233.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
          Length = 638

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 149/362 (41%), Positives = 226/362 (62%), Gaps = 9/362 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL LS  V+ AV + GY  P+ IQ  TIP +L+  DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 19  FSDLALSDAVLKAVREIGYETPSAIQAATIPTLLEGRDVVGLAQTGTGKTAAFALPILSR 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+  +++   P+ L+L PTRELA QV + FEKY  +   + V  + GG  +  Q   L R
Sbjct: 79  LDVSQSK---PQALVLSPTRELALQVCEAFEKYATHMRGVHVLPVYGGQAYGVQLSALRR 135

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGRI+DH  +G L ++ ++ LV+DEAD ML MGF   ++ I +  P  +Q  
Sbjct: 136 GVHVVVGTPGRIMDHLAKGTLDLSELKYLVLDEADEMLKMGFAEDVETILADTPEDKQVA 195

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSST-AETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSATM  +++++S+ +L++ + I V + ++T A T +   V +Y Q   K   L ++L+
Sbjct: 196 LFSATMPAQIRRISKKYLRDAEEITVKSQTTTSANTSQRYLVVSYPQ---KVDALTRILE 252

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  I+F   K    NL   L  +G+S  AI G++ Q  R + ++  K G + ++V
Sbjct: 253 VEN-FEGMIVFVRTKSETENLAEKLRARGYSAAAISGDVAQAQRERTVNQLKSGKLDILV 311

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV NFD+P   E+Y+HRIGRTGRAGR G A + V   + + + AI
Sbjct: 312 ATDVAARGLDVDRISHVVNFDIPVDTESYVHRIGRTGRAGRSGSAISFVTPRERRLLTAI 371

Query: 361 EK 362
           EK
Sbjct: 372 EK 373


>gi|288556913|ref|YP_003428848.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288548073|gb|ADC51956.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 539

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 151/382 (39%), Positives = 236/382 (61%), Gaps = 9/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  +S  +  A+ D G+ +P+PIQ K IP++L+  DV G AQTGTGKTA+F +P++  
Sbjct: 4   FSDFQISEPIKRAIKDMGFEEPSPIQEKAIPVILEGGDVIGQAQTGTGKTAAFGIPVIDK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + + R      + LIL PTRELA QV+   +K   +  +    + GG     Q K L++G
Sbjct: 64  VTEER----YVQALILTPTRELAIQVSGELQKLSAHKRIRTMPIYGGQSIGHQIKALKQG 119

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGRILDH  R  L +N +  +V+DEAD MLDMGF+  I++I   V   RQTLL
Sbjct: 120 VQVVIGTPGRILDHIRRKTLQLNKVHTIVLDEADEMLDMGFVDDIESILREVKGARQTLL 179

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   ++K+S  ++  PK + +N    TA +I+  +     +   K   L +++ S+
Sbjct: 180 FSATMPPAIKKLSRRYMTTPKTVTINKGEVTAPSIDQLYYKVLER--NKIDSLCRIIDSE 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           + +  GI+FC  KK V  L  +L+ +G+    +HG++ Q  R  ++  F++ +I+ ++A+
Sbjct: 238 E-VDLGILFCRTKKGVAELTEALQARGYLADGLHGDLTQSQRDAVMKKFRDSSIEFLIAT 296

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+D+ +V HV N+D+P   E+Y+HRIGRTGRAGR G A TLV   ++KH+ +IE+
Sbjct: 297 DVAARGIDVDNVTHVINYDIPQDPESYVHRIGRTGRAGRKGLALTLVTPREMKHLRSIEQ 356

Query: 363 LIEKKVDWLNGDLSSLNPPLEK 384
             E K+   + D+ ++   +EK
Sbjct: 357 --EIKMAIPSQDVPTIEDVVEK 376


>gi|285018817|ref|YP_003376528.1| ATP-dependent RNA helicase (cold-shock dead box protein)
           [Xanthomonas albilineans GPE PC73]
 gi|283474035|emb|CBA16536.1| probable atp-dependent rna helicase (cold-shock dead box protein)
           [Xanthomonas albilineans]
          Length = 657

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 147/373 (39%), Positives = 228/373 (61%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   V+ AV + GY  P+PIQ  TIP +L   D+ G AQTGTGKTA+F LP+L+ 
Sbjct: 11  FADLGLCSAVMKAVAEIGYESPSPIQAATIPALLTGRDLLGQAQTGTGKTAAFALPILSR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+  +   R P+ L+L PTRELA QVA+ F +Y        V  + GG P+  Q   L+R
Sbjct: 71  LDFAQ---RKPQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQQLSALKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P +RQ  
Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPQSRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L +P  + + + ++T+  I   + A    +  K   L ++L+ 
Sbjct: 188 LFSATMPAAIKRIAQTYLNDPAEVIIASKTTTSANIRQRYWAVSGLH--KLDALTRILEV 245

Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   IIF   K     L   L+ +G +  AI+G+I Q  R +++   K+G + ++
Sbjct: 246 EPFDAM---IIFARTKAGTDELAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKLDIL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   V+  +   + A
Sbjct: 303 VATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLRA 362

Query: 360 IEKLIEKKVDWLN 372
           IE+   + ++ + 
Sbjct: 363 IERATRQPIEEMQ 375


>gi|312867114|ref|ZP_07727324.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           parasanguinis F0405]
 gi|311097243|gb|EFQ55477.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           parasanguinis F0405]
          Length = 536

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 235/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS +++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLGLEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK      + + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  ---EKIDVDNTVIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +++IE L++DEAD ML+MGF+  I+ I S VP TRQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHIETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + ++++   F++ P+ +++     T + ++  ++    +  +K   + +L+ 
Sbjct: 178 LLFSATMPEAIKRIGVQFMKEPEHVKIAAKELTTDLVDQYYI--RVKEGEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKTGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  +
Sbjct: 355 ENLTKKRMKGM 365


>gi|315606927|ref|ZP_07881933.1| ATP-dependent RNA helicase RhlE [Prevotella buccae ATCC 33574]
 gi|315251308|gb|EFU31291.1| ATP-dependent RNA helicase RhlE [Prevotella buccae ATCC 33574]
          Length = 375

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 158/370 (42%), Positives = 229/370 (61%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +S  ++ A+    Y  PTPIQ K IP+ L+  D+ GIAQTGTGKTA+F +P++
Sbjct: 1   MTFNELNISKPILKALELKEYETPTPIQQKAIPIGLEGRDLLGIAQTGTGKTAAFAIPII 60

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L K     R R  + LIL PTRELA Q+ + F+ Y K   L   ++ GG+    Q K+
Sbjct: 61  QQLAKSADDNRRRDIKALILTPTRELAIQIEECFKDYSKFTRLRCCVIFGGVSQNGQVKE 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG D+LI TPGR+LD  ++  + + +I   V+DEADRMLDMGFI  I+ +  L+P  R
Sbjct: 121 LERGVDILIATPGRLLDLISQHIITLEHIRHFVLDEADRMLDMGFIHDIKKLIPLLPKRR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM + + K+S++ L  P R+EV   SS  +TIE      + +  +K  LL  +
Sbjct: 181 QTLLFSATMPETIAKLSKSLLYKPARVEVAPVSSVVDTIEQRLY--FVEKPQKTDLLVSV 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L++ D  ++ ++F   K     +   L+ +     AIHGN  Q +R + L+NFK G  ++
Sbjct: 239 LKN-DGNRSALVFSRTKHGADRIARKLKARHIECEAIHGNKSQNARQRALTNFKSGKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI ++  V N+D+P+ AE Y+HRIGRTGRAG  G A T   +E+   + 
Sbjct: 298 IVATDIAARGIDIANLQMVINYDLPDVAETYVHRIGRTGRAGNSGVALTFCTQEERPMVR 357

Query: 359 AIEKLIEKKV 368
            I+KL  KK+
Sbjct: 358 DIQKLTGKKL 367


>gi|126175951|ref|YP_001052100.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|152999102|ref|YP_001364783.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|217971789|ref|YP_002356540.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|125999156|gb|ABN63231.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
 gi|151363720|gb|ABS06720.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|217496924|gb|ACK45117.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 640

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 148/367 (40%), Positives = 230/367 (62%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ A+ + GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L  
Sbjct: 8   FRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           +         P+ L+L PTRELA QVA+ F  Y K   N  V  + GG   + Q   L+R
Sbjct: 68  VTSQTT----PQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L +++++ LV+DEAD ML MGFI  I+ I    P  RQ  
Sbjct: 124 GPQVIVGTPGRVMDHMRRGTLKLDSLQALVLDEADEMLKMGFIDDIEWILEHTPSERQLA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +++++V+   L+NP  + + +  +T E+IE  FV   +Q++K  AL++ +L+ 
Sbjct: 184 LFSATMPEQIKRVANQHLRNPVHVRIESSQTTVESIEQRFVQV-SQHNKLEALVR-VLEV 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++T +  IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++A
Sbjct: 242 ENT-EGVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +GHV N+D+P  AE Y+HRIGRTGRAGR G A   V   +++ +  IE
Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360

Query: 362 KLIEKKV 368
           +    ++
Sbjct: 361 RSTNSRI 367


>gi|327403899|ref|YP_004344737.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327319407|gb|AEA43899.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 375

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 153/370 (41%), Positives = 235/370 (63%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L P ++ A+ +  Y  PTPIQ ++IP +LQ  D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MQFDELNLLPHLLDALKELEYTTPTPIQEQSIPSLLQGKDLFGCAQTGTGKTAAFALPIL 60

Query: 61  TILE-KGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L+  G+ + + P R L+L PTRELA Q+ D+F+ YGK+  L   ++ GG+    Q  +
Sbjct: 61  QHLDPDGQVKGKRPIRCLVLAPTRELANQINDSFKSYGKHSKLRSMVIFGGVNQNKQVNQ 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+L+ TPGR+LD  N+G + ++ I   V+DEADRMLDMGFI  I+ I   +P  +
Sbjct: 121 LNAGIDILVATPGRLLDLMNQGHIQLSKITHFVLDEADRMLDMGFIHDIKKILPRLPKNK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q + FSAT++  + +++   L +P  + V   SSTAE +E  FV  Y + + K   L+QL
Sbjct: 181 QNIFFSATISPTIMELAGTILFDPVNVRVTPVSSTAEIVEQ-FV-YYVEKADKRNFLKQL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +++++ + + I+F   K     +   L K G    AIHG+  Q +R + L+ FK  T+  
Sbjct: 239 IKTEN-ISHAIVFTRTKHGADRVARELTKSGLKAEAIHGDKSQNARERALAGFKNRTVSF 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RG+DI  + +V NF++P  AE Y+HRIGRTGRAG  G A+TL + E+  ++ 
Sbjct: 298 LIATDIASRGIDIDLLEYVINFEIPEVAETYVHRIGRTGRAGASGIAYTLCSSEEKAYLK 357

Query: 359 AIEKLIEKKV 368
           AI+KLI +++
Sbjct: 358 AIQKLINQQI 367


>gi|262275236|ref|ZP_06053046.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
 gi|262220481|gb|EEY71796.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
          Length = 410

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 157/370 (42%), Positives = 234/370 (63%), Gaps = 14/370 (3%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILE---KGRARVRMPRT 75
           GY  PT IQ + IP VL   DV G AQTGTGKTA+F LP++  +LE   KG ARV     
Sbjct: 21  GYSDPTAIQQQAIPHVLDGKDVMGAAQTGTGKTAAFALPVIHQLLERGVKGAARV----- 75

Query: 76  LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           L++ PTRELA QV +   +Y ++ +L    L GG     Q  +L +  ++++ TPGR+LD
Sbjct: 76  LVVTPTRELAQQVYEKVVEYSQHTSLKCVALYGGANINPQKNQLTKKPEIIVGTPGRLLD 135

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
           H + G L +N+++ L++DEADRMLDMGFI  I+ +   +P TRQTL FSAT   ++  ++
Sbjct: 136 HLHIGTLTLNSLDTLILDEADRMLDMGFISDIKRLMKKMPKTRQTLFFSATYPKQVVDLA 195

Query: 196 ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
              L NP RIEV+T +STAET+            +K  LL  L+ S++ ++  ++F   +
Sbjct: 196 YRLLSNPVRIEVSTANSTAETVNQLVHPV--DKKRKRELLSYLIGSRN-LQQVLVFAKTR 252

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           ++   L + L+  G    AIHG   Q +R ++L  FK G ++++VA+D+AARGLDIP + 
Sbjct: 253 QSTEALANELKLDGLKAEAIHGEKTQGARNRVLEGFKSGEVRVLVATDVAARGLDIPSLD 312

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV--DWLNG 373
            VFN+++P++ E+YIHRIGRTGRAG+ G A +LV++E+   + AIE LI+ ++  +WL G
Sbjct: 313 TVFNYELPHQPEDYIHRIGRTGRAGKPGMAISLVSREEEGMLTAIETLIDLRLPQEWLAG 372

Query: 374 DLSSLNPPLE 383
               L+  +E
Sbjct: 373 YEPDLHADME 382


>gi|160873699|ref|YP_001553015.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|304411613|ref|ZP_07393226.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307306611|ref|ZP_07586353.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|160859221|gb|ABX47755.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|304350140|gb|EFM14545.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306910579|gb|EFN41008.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|315265932|gb|ADT92785.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 640

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 148/367 (40%), Positives = 230/367 (62%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ A+ + GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L  
Sbjct: 8   FRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           +         P+ L+L PTRELA QVA+ F  Y K   N  V  + GG   + Q   L+R
Sbjct: 68  VTSQTT----PQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L +++++ LV+DEAD ML MGFI  I+ I    P  RQ  
Sbjct: 124 GPQVIVGTPGRVMDHMRRGTLKLDSLQALVLDEADEMLKMGFIDDIEWILEHTPSERQLA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +++++V+   L+NP  + + +  +T E+IE  FV   +Q++K  AL++ +L+ 
Sbjct: 184 LFSATMPEQIKRVANQHLRNPVHVRIESSQTTVESIEQRFVQV-SQHNKLEALVR-VLEV 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++T +  IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++A
Sbjct: 242 ENT-EGVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +GHV N+D+P  AE Y+HRIGRTGRAGR G A   V   +++ +  IE
Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360

Query: 362 KLIEKKV 368
           +    ++
Sbjct: 361 RSTNSRI 367


>gi|119946809|ref|YP_944489.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119865413|gb|ABM04890.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 581

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 235/373 (63%), Gaps = 9/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L L   +   V + GY  P+PIQ + IPL+L+  DV G+AQTGTGKTA+F LP+L 
Sbjct: 15  NFTELNLPEALTKVVSELGYETPSPIQAQCIPLLLEGKDVLGLAQTGTGKTAAFALPLLA 74

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++     +  P+ L L PTRELA QVA+ F+ Y ++     V  + GG  ++ Q K+L+
Sbjct: 75  NID---INLNQPQVLALAPTRELAIQVAEAFQTYARHLRGFHVLPIYGGQSYDIQFKQLK 131

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGRI+DH  R  L ++NI+ L++DEAD ML MGFI  ++ I   +P  RQT
Sbjct: 132 RGPQVVVGTPGRIMDHLKRKTLDLSNIKTLILDEADEMLRMGFIDDVETIMKEMPDKRQT 191

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLL 239
            LFSATM D+++++++ ++ +P  +++ + +ST E IE  C++    +   K   L ++L
Sbjct: 192 ALFSATMPDQIKRITKRYMNSPTEVKIQSKTSTVENIEQKCWI---VRGVNKLDALTRML 248

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++     IIF   K   V L   LE +G+   A++G+++Q+ R + ++  K G + ++
Sbjct: 249 ETEE-YDGVIIFARTKTATVELAERLEARGYRSAALNGDMNQQVRERTIARLKSGGLDIL 307

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +  V N+D+P   E+Y+HRIGRTGRAGR GKA    A  + + + A
Sbjct: 308 VATDVAARGLDVERLSLVVNYDIPTDTESYVHRIGRTGRAGRKGKAILFAAPRERRLLKA 367

Query: 360 IEKLIEKKVDWLN 372
           IE+   +++  ++
Sbjct: 368 IERATRQEITIMD 380


>gi|312130956|ref|YP_003998296.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311907502|gb|ADQ17943.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 428

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 152/372 (40%), Positives = 233/372 (62%), Gaps = 7/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L+ +++ AV + GY +PT IQ K IP++   HDV GIAQTGTGKTA+++LP+L  
Sbjct: 5   FKDLDLNKQLIMAVEELGYTEPTEIQEKAIPIIQAGHDVLGIAQTGTGKTAAYLLPVL-- 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++   A+ +  R L+L PTREL  Q+ +      K  +L +  L GG+  + Q + L++G
Sbjct: 63  MKVKYAQGQNMRALVLAPTRELVMQIHEAAVGLAKYTDLRMVALYGGLGPKTQMENLKKG 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR +D +  G++ + +++ L++DEAD+M+DMGF+P I+ I  ++P  R+ LL
Sbjct: 123 VDIIIATPGRFMDLYRMGEIPVKSLQYLILDEADKMMDMGFMPQIRQILEVIPRKRKNLL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    ++++SE FL+ P +IEV TPS+TA +     +     +  K  LL  L ++ 
Sbjct: 183 FSATFQPRVERLSEEFLEAPYKIEV-TPSATAASTVEQHIYRLPNFKTKINLLGYLFENT 241

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFS---VCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +   IIFC  K    N+   LE++      +  +H N  Q +R+  +++FK G IQ++
Sbjct: 242 E-IPRAIIFCRTKAVADNVYKFLERKVIGSGKIRVLHANKGQNTRINAINDFKSGEIQVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++D+AARG+D+  V HV NFDVP   E+Y+HRIGRTGRA   G A T V K +  HI+ 
Sbjct: 301 VSTDVAARGIDVSGVSHVINFDVPLVYEDYVHRIGRTGRAKSEGIALTFVLKHEEFHIER 360

Query: 360 IEKLIEKKVDWL 371
           IEKLI   +  L
Sbjct: 361 IEKLIRNPIPEL 372


>gi|50954992|ref|YP_062280.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951474|gb|AAT89175.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 589

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 150/365 (41%), Positives = 225/365 (61%), Gaps = 11/365 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   V+  + D GY  P+ IQ  TIPL+L+  DV G+AQTGTGKTA+F LP+L
Sbjct: 17  LTFADLGLDRAVLAVLKDVGYETPSAIQAATIPLLLEGRDVVGLAQTGTGKTAAFALPIL 76

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
           + L+  +   + P+ L+L PTRELA QVA+ FE Y  +    V LL   GG  +  Q   
Sbjct: 77  SRLDLSQ---KSPQALVLAPTRELALQVAEAFESYATHLK-GVHLLPVYGGQGYGVQLSA 132

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG  +++ TPGRI+DH ++G L ++ ++ LV+DEAD ML MGF   ++ I +  P  +
Sbjct: 133 LRRGVHIVVGTPGRIMDHLDKGTLDLSGLKHLVLDEADEMLKMGFAEDVEKILADTPDDK 192

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST-AETIEHCFVATYAQYSKKCALLQQ 237
           Q  LFSATM  +++++S+ +L +P+ + V   ++T A T +   V +Y+Q   K   L +
Sbjct: 193 QVALFSATMPAQIRRISKKYLHDPEEVTVKARTTTSANTTQRYLVVSYSQ---KVDALTR 249

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+ ++  +  I+F   K     L   L  +G+S  AI G++ Q  R + +   K G + 
Sbjct: 250 ILEVEN-FEAMIVFVRTKNETETLAERLRARGYSAAAISGDVAQAQRERTVGQLKSGKLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  + HV NFD+P   E+Y+HRIGRTGRAGR G A + V   + + +
Sbjct: 309 ILVATDVAARGLDVDRISHVVNFDIPVDTESYVHRIGRTGRAGRSGAAISFVTTRERRLL 368

Query: 358 DAIEK 362
            AIEK
Sbjct: 369 TAIEK 373


>gi|315037505|ref|YP_004031073.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus
           GRL 1112]
 gi|325955969|ref|YP_004286579.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           30SC]
 gi|312275638|gb|ADQ58278.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus
           GRL 1112]
 gi|325332534|gb|ADZ06442.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           30SC]
 gi|327182801|gb|AEA31248.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus
           GRL 1118]
          Length = 497

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 151/384 (39%), Positives = 240/384 (62%), Gaps = 14/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+  ++ A+  +G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++K   + +  + +I+EPTRELA Q  +   + G++ +  V ++ GG     Q + L+
Sbjct: 61  QTIDK---KEKAIQAIIIEPTRELAIQTQEELFRLGRDEHTHVQVVYGGADIGRQIRSLK 117

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LDH  RG + ++ ++ +V+DEAD MLDMGFI  I++I       +Q
Sbjct: 118 HHVPSILVGTPGRLLDHLKRGTINLDKVKAVVLDEADEMLDMGFIQDIESILKYAKNRKQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + ++ E F+ +PK +++     TA+ I+  FV   A+ S+K  ++ +L+
Sbjct: 178 TLLFSATMPKPILRIGEKFMNHPKIVQIKAKELTADLIDQYFVR--AKESEKFDIMCRLI 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      ++F   K+ V  L   L+ +G++   IHG++ Q  RM +L  F+EG + ++
Sbjct: 236 DVQGP-DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE 383
           IE+L +KK       +S L PP +
Sbjct: 355 IEQLTQKK-------MSPLRPPTD 371


>gi|227496195|ref|ZP_03926501.1| superfamily II helicase [Actinomyces urogenitalis DSM 15434]
 gi|226834278|gb|EEH66661.1| superfamily II helicase [Actinomyces urogenitalis DSM 15434]
          Length = 762

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 152/392 (38%), Positives = 232/392 (59%), Gaps = 15/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ AV D GYV PT IQ + IP++L   DV G+AQTGTGKTA+F LP+L  
Sbjct: 124 FADLGLPADLLKAVTDMGYVTPTAIQREAIPVLLSGRDVVGVAQTGTGKTAAFGLPLLDA 183

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNF-EKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++   AR    + L+L PTRELA Q A+   +   ++  L V  + GG P+  Q   L+ 
Sbjct: 184 VD---ARDGEVQALVLAPTRELALQSAEAITDMASRSRGLDVVAVYGGAPYGPQIGALKS 240

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++D  ++G L +  +   V+DEAD ML MGF   ++ I + +P  R+T 
Sbjct: 241 GAQVVVGTPGRVIDLIDKGALRLGAVRYFVLDEADEMLRMGFAEDVETIAASLPAERRTA 300

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +Q V+   L +P R+EV+  SST +T+   +      +  K   + ++L +
Sbjct: 301 LFSATMPPAIQAVARQHLSDPARVEVSRQSSTVDTVHQTYAVV--PFRHKVGAVSRVLAT 358

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  I+F   K    ++   L  +G    AI G++ QR R +++   + GT+ ++VA
Sbjct: 359 TEA-EAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRSGTLDVLVA 417

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V NFDVP  AE Y+HRIGRTGRAGRHG+A T +  ++   +  IE
Sbjct: 418 TDVAARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQIE 477

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           +L   +++ +     +L  P    D+++H  A
Sbjct: 478 RLTGTRLEEI-----TLPSP---ADVSRHRAA 501


>gi|161870287|ref|YP_001599457.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
           053442]
 gi|161595840|gb|ABX73500.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
           053442]
          Length = 457

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 160/423 (37%), Positives = 252/423 (59%), Gaps = 21/423 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +K  LL++
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTIQKRNLLER 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G ++
Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416
           ++I++L   K+             +E+I+  +     +    P+K    + R++N Y S 
Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRYESA 409

Query: 417 KSH 419
           K+ 
Sbjct: 410 KAQ 412


>gi|149183244|ref|ZP_01861688.1| ATP-dependent RNA helicase [Bacillus sp. SG-1]
 gi|148849040|gb|EDL63246.1| ATP-dependent RNA helicase [Bacillus sp. SG-1]
          Length = 470

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 152/362 (41%), Positives = 222/362 (61%), Gaps = 13/362 (3%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ + TPIQ   IPL L+  DV G AQTGTGKT +F +PM+  ++     V+    LI+ 
Sbjct: 2   GFEEATPIQAGAIPLALEGKDVIGQAQTGTGKTTAFGIPMVEKIDVKNPNVQ---GLIIA 58

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA QV++   K G++  + V  + GG   + Q + +++   +++ TPGR+LDH NR
Sbjct: 59  PTRELAIQVSEELYKIGQDKRVNVLAVYGGQDIQRQIRAMKKNPHIIVGTPGRMLDHINR 118

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
             L + N+  LV+DEAD ML+MGFI  I++I   VP  RQTLLFSATM   ++K++ NF+
Sbjct: 119 RTLKLGNVSTLVLDEADEMLNMGFIEDIESILKNVPDNRQTLLFSATMPGPIRKIANNFM 178

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
            +P+ + V +   T   IE  FV   A   +K  +L +LL  Q + +  IIF   K+ V 
Sbjct: 179 TDPETVSVKSKEMTVPHIEQYFVK--AHEKEKFDVLSRLLDVQ-SPELAIIFGRTKRRVD 235

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            L  +L  +G+S   IHG++ Q  RM +L  FKEG I ++VA+D+AARGLDI  V HV+N
Sbjct: 236 ELARALTLRGYSAEGIHGDLSQAKRMTVLRQFKEGRIDVLVATDVAARGLDISGVTHVYN 295

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           FD+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +EK  +K        ++ + 
Sbjct: 296 FDIPQDPESYVHRIGRTGRAGKEGMAMTFVTPREMGYLRIVEKTTKK-------SMTQMK 348

Query: 380 PP 381
           PP
Sbjct: 349 PP 350


>gi|303251558|ref|ZP_07337732.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649556|gb|EFL79738.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 619

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 147/370 (39%), Positives = 233/370 (62%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   ++ AV D G+V P+PIQ +TIP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 6   LTFADLGLPQSILDAVNDMGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             ++  +   R P+ L++ PTRELA QVAD  E++ KN   + V  + GG  ++ Q + L
Sbjct: 66  AQIDPTK---RHPQMLVMAPTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G+ V++ TPGRILDH  RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 KQGSQVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+Q+P+ +++     +A  I   +      + K  ALL+ L 
Sbjct: 183 TALFSATMPEPIRRITRRFMQDPQEVKIQATQRSAPDITQSYWLVNG-FRKNDALLRFL- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++    E+ G+   A++G++ Q++R + L   K G + ++
Sbjct: 241 -EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V NFD+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 300 VATDVAARGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359

Query: 360 IEKLIEKKVD 369
           IE L++K +D
Sbjct: 360 IEHLMKKPID 369


>gi|304396354|ref|ZP_07378235.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304355863|gb|EFM20229.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 642

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 145/377 (38%), Positives = 238/377 (63%), Gaps = 11/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  ++ ++   GYVKP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     V+ P+ L+L PTRELA QVA+   ++ K+   L V  L GG  ++ Q + L +
Sbjct: 68  IDPT---VKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPADHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++ F+++P+ + + +  +T   I   +   +  Y +K   L + L++
Sbjct: 185 LFSATMPEAIRRITKRFMKDPQEVRIQSSLTTRPDISQSY---WTAYGRKTDALVRFLEA 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 242 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 301 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 360

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 361 RTMKLTIPEVELPNAEL 377


>gi|126664124|ref|ZP_01735117.1| possible ATP-dependent RNA helicase [Flavobacteria bacterium BAL38]
 gi|126623838|gb|EAZ94533.1| possible ATP-dependent RNA helicase [Flavobacteria bacterium BAL38]
          Length = 419

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 157/371 (42%), Positives = 228/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   +  A+ + GY  PTPIQ + IP +L   D+   AQTGTGKT +F +P+L
Sbjct: 1   MTFNDLKLYNNIQQALEEEGYTNPTPIQEQAIPEILLGQDLVACAQTGTGKTGAFAIPIL 60

Query: 61  TILEK--GRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            ++ K  G A+  +  RTL++ PTRELA Q+ ++F+ YGK  N+   ++ GG+    Q  
Sbjct: 61  NLIHKIVGSAKKAKHIRTLVVTPTRELAIQIDESFKTYGKYTNVKSLVIFGGVNQVPQVN 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L+ G DVLI TPGR+LD   +G + ++++  LV+DEAD+MLDMGFI  ++ I  L P  
Sbjct: 121 ELKMGIDVLIATPGRLLDLHKQGFIDLDHLHHLVLDEADQMLDMGFINDVKKIIKLTPDN 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM   ++++++ FL  PK I V   SSTAE +       +     K  LL+Q
Sbjct: 181 RQTLLFSATMPIAIRELADTFLTRPKYISVTPISSTAENVSQKVY--FVNKDDKRLLLKQ 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+  ++++ N ++F   K    N+   L+K      AIHG+  Q +R ++L  FK   I 
Sbjct: 239 LI-IEESLSNALVFTRTKHGADNIVKVLKKAHIKAEAIHGDKSQNARQRVLEQFKNKEID 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  +  V NFD+PN +E Y+HRIGRTGRAG  G A +   K++  + 
Sbjct: 298 ILVATDIAARGIDIEQLPFVINFDIPNISETYVHRIGRTGRAGNSGLAISFCGKDEKPYW 357

Query: 358 DAIEKLIEKKV 368
             IEKLI  KV
Sbjct: 358 LDIEKLIRMKV 368


>gi|38233613|ref|NP_939380.1| DEAD-box helicase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199873|emb|CAE49539.1| DEAD-box helicase [Corynebacterium diphtheriae]
          Length = 680

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 144/367 (39%), Positives = 229/367 (62%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   ++ AV   G+  P+PIQ +TIP+++Q HDV G+AQTGTGKTA+F LP+L+ 
Sbjct: 69  FEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAAFALPILSR 128

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++    + R P+ LIL PTRELA QVAD+F+ +  +  ++ V  + GG  +  Q   L R
Sbjct: 129 ID---VKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRR 185

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  +G L ++N+  LV+DEAD ML+MGF   ++ I    P  +Q  
Sbjct: 186 GAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVA 245

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++S +++++P  I+V + + T   I   ++     +  K   L ++L+ 
Sbjct: 246 LFSATMPNGIRRLSRDYMKDPHEIQVKSQTRTNTNITQRYL--NVAHRNKLDALTRILEV 303

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  I+F   K     +   L  +GFS  AI+G+I Q  R + +   K+G + ++VA
Sbjct: 304 TE-FEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 362

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HVFN+D+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 363 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 422

Query: 362 KLIEKKV 368
           +    K+
Sbjct: 423 RATNAKL 429


>gi|17545671|ref|NP_519073.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
 gi|17427964|emb|CAD14654.1| putative atp-dependent rna helicase protein [Ralstonia solanacearum
           GMI1000]
          Length = 608

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 147/388 (37%), Positives = 231/388 (59%), Gaps = 29/388 (7%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE- 64
           LGL  ++  A+ +  Y +PTP+Q + IP  L   D+   +QTG+GKTA+F+LP +  +  
Sbjct: 35  LGLDERIARALGELNYTQPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFMLPAIQRISE 94

Query: 65  ------------KGRARVRMPRT-------LILEPTRELAAQVADNFEKYGKNYNLTV-A 104
                       + R + R PR        L+L PTRELA QV     +YG++    V A
Sbjct: 95  QPEPQRPRADGPQQRVKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRRIVCA 154

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
            ++GG+P+  Q   L R  D++I TPGR+LDH + G++ ++ +++LV DEADRMLDMGF 
Sbjct: 155 SILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFA 214

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
             I+ I    P +RQ L+FSATM   +++++E  ++ P+RIE+      A  I+   +  
Sbjct: 215 DDIEAIVGATPASRQMLMFSATMDRRIEQLAERMMREPQRIEI-----AAARIDQSHIEE 269

Query: 225 YAQYSKKCALLQQLLQ---SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
              ++   +  QQLL       T+K  I+F   K++  +L   L + GFS  A+HG++ Q
Sbjct: 270 RLHFTDDLSHKQQLLDHLLRDATLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQ 329

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
            +R + L+  + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR
Sbjct: 330 GARNRTLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGR 389

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
            G A  LV   D      IE+ +++++D
Sbjct: 390 SGIAINLVNHGDTFQWRRIERFVDRRID 417


>gi|16125088|ref|NP_419652.1| DEAD-box ATP dependent DNA helicase [Caulobacter crescentus CB15]
 gi|221233815|ref|YP_002516251.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
 gi|13422088|gb|AAK22820.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter
           crescentus CB15]
 gi|220962987|gb|ACL94343.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
          Length = 476

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 150/368 (40%), Positives = 224/368 (60%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGL+  ++ A+ + GY +PTPIQ + IP+VLQ  D+ GIAQTGTGKTA+F LP+L  
Sbjct: 4   FSDLGLAKPLLKALAEKGYKEPTPIQAQAIPVVLQGKDLLGIAQTGTGKTAAFALPILQR 63

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L + R  A  R  R L+L PTRELA Q+A+NF+ Y  +  L+V  + GG+ +  Q K L 
Sbjct: 64  LAEDRKPAPRRGCRCLVLSPTRELATQIAENFKAYAVHMGLSVHTIYGGVKYGPQMKALA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVL+ TPGR++DH      +++  EI V+DEAD+MLD+GF+  I+ I + +   RQ 
Sbjct: 124 GGIDVLVATPGRLMDHMAEKSAIVSGTEIFVLDEADQMLDLGFVVPIRKIAAQLTKNRQN 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+ K++   L NP ++ V   ++T E I+   +   AQ  +K  LL +L  
Sbjct: 184 LFFSATMPSEIGKLAGELLNNPVQVSVAPQATTVERIDQRVLFIEAQ--RKRPLLAELF- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  +    I+F   K+    +   L   G    +IHG+  Q  R + L+ FK G ++ +V
Sbjct: 241 ADTSFSRTIVFTRTKRGADRVAKYLNAAGIEAASIHGDKTQGQRERALAAFKAGEMRALV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV HV N+++PN  E Y+HRIGRT R G+ G A +  A ++   +  I
Sbjct: 301 ATDIAARGIDVNDVSHVINYELPNVPEAYVHRIGRTARKGKDGIAISFCADDERNLLKDI 360

Query: 361 EKLIEKKV 368
           +K   + +
Sbjct: 361 QKATRQTI 368


>gi|91227745|ref|ZP_01261972.1| RhlE [Vibrio alginolyticus 12G01]
 gi|269967907|ref|ZP_06181947.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 40B]
 gi|91188392|gb|EAS74687.1| RhlE [Vibrio alginolyticus 12G01]
 gi|269827430|gb|EEZ81724.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 40B]
          Length = 402

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 152/362 (41%), Positives = 222/362 (61%), Gaps = 4/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV   GY KPT IQ K IP+VL+  ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSASIADAVKALGYEKPTSIQQKAIPIVLRGRNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G   R +  R +IL PTRELA QV  + E YGKN  L    + GG+ +  Q + L
Sbjct: 61  EKLSRGETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVDYAPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR++D + +  +  + +E+LV+DEAD+MLDMGFI  I  I   +P   Q
Sbjct: 121 IEGVDIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDAIDKIVDCMPEHVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT+++ ++ +++N + +P+ I +   S++   I+     T      K +LL  LL
Sbjct: 181 SLLFSATLSNPVRDLAKNAIIDPEEITIAKHSASKSNIKQWI--TTVDKDMKSSLLSHLL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D     ++F   K     L   LEK+G    A H   +QR R +++  FK G IQ +
Sbjct: 239 KEND-WSQVLVFIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI ++  V N+D+P  A+ Y+HRIGRTGRAG  G+A +LV+K+D K++  
Sbjct: 298 VATGVAARGIDIDNLPVVINYDLPYPADEYVHRIGRTGRAGAKGEAISLVSKDDFKNLCM 357

Query: 360 IE 361
           IE
Sbjct: 358 IE 359


>gi|127511465|ref|YP_001092662.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126636760|gb|ABO22403.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 599

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 149/371 (40%), Positives = 229/371 (61%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ A+ + GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L  
Sbjct: 8   FRELGLSEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLNA 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  R    +P+ L+L PTRELA QVA+ F  Y K    L V  + GG     Q   L R
Sbjct: 68  IDPNR---NVPQILVLAPTRELAVQVAEAFGSYSKFMKGLHVLPIYGGQSMHQQLNALRR 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH  RG L +  +  LV+DEAD ML MGFI  I+ I    P  RQ  
Sbjct: 125 GPQIVVGTPGRVMDHMRRGTLKLETLNALVLDEADEMLKMGFIDDIEWILEHTPQERQLA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +++++V+  +LQ P  I +    +T E+IE  FV   +Q++K  AL++ +L+ 
Sbjct: 185 LFSATMPEQIKRVANKYLQTPVHISIAASHTTVESIEQRFVQV-SQHNKLEALVR-VLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++T +  IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++A
Sbjct: 243 ENT-EGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +GHV N+D+P   E Y+HRIGRTGRAGR G A   V   +++ +  IE
Sbjct: 302 TDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIE 361

Query: 362 KLIEKKVDWLN 372
           +  + ++  +N
Sbjct: 362 RATKSRISPMN 372


>gi|300718571|ref|YP_003743374.1| Cold-shock DEAD-box protein A [Erwinia billingiae Eb661]
 gi|299064407|emb|CAX61527.1| Cold-shock DEAD-box protein A [Erwinia billingiae Eb661]
          Length = 645

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 144/377 (38%), Positives = 238/377 (63%), Gaps = 11/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+ +++ ++   GYVKP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLNAELLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++   + ++ P+ L+L PTRELA QV +    + K+   L V  L GG  ++ Q + L +
Sbjct: 68  ID---SSLKAPQILVLAPTRELAVQVGEAITDFSKHMKGLNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDNHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++ F+++P+ + + +  +T   I   +   +  + +K   L + L++
Sbjct: 185 LFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSY---WTAFGRKTDALTRFLEA 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 242 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V NFD+P  AE+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 301 TDVAARGLDVERISLVVNFDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 360

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 361 RTMKLTIPEVELPNAEL 377


>gi|165975989|ref|YP_001651582.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876090|gb|ABY69138.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 619

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 147/370 (39%), Positives = 233/370 (62%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   ++ AV D G+V P+PIQ +TIP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 6   LTFADLGLPQSILDAVNDMGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             ++  +   R P+ L++ PTRELA QVAD  E++ KN   + V  + GG  ++ Q + L
Sbjct: 66  AQIDPTK---RHPQMLVMAPTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G+ V++ TPGRILDH  RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 KQGSQVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+Q+P+ +++     +A  I   +      + K  ALL+ L 
Sbjct: 183 TALFSATMPEPIRRITRRFMQDPQEVKIQATQRSAPDITQSYWLVNG-FRKNDALLRFL- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++    E+ G+   A++G++ Q++R + L   K G + ++
Sbjct: 241 -EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V NFD+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 300 VATDVAARGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359

Query: 360 IEKLIEKKVD 369
           IE L++K +D
Sbjct: 360 IEHLMKKPID 369


>gi|146319228|ref|YP_001198940.1| superfamily II DNA/RNA helicase [Streptococcus suis 05ZYH33]
 gi|146321430|ref|YP_001201141.1| superfamily II DNA/RNA helicase [Streptococcus suis 98HAH33]
 gi|253752268|ref|YP_003025409.1| DEAD box helicase family protein [Streptococcus suis SC84]
 gi|253754094|ref|YP_003027235.1| DEAD box helicase family protein [Streptococcus suis P1/7]
 gi|253756028|ref|YP_003029168.1| DEAD box helicase family protein [Streptococcus suis BM407]
 gi|145690034|gb|ABP90540.1| Superfamily II DNA and RNA helicase [Streptococcus suis 05ZYH33]
 gi|145692236|gb|ABP92741.1| Superfamily II DNA and RNA helicase [Streptococcus suis 98HAH33]
 gi|251816557|emb|CAZ52193.1| DEAD box helicase family protein [Streptococcus suis SC84]
 gi|251818492|emb|CAZ56321.1| DEAD box helicase family protein [Streptococcus suis BM407]
 gi|251820340|emb|CAR46890.1| DEAD box helicase family protein [Streptococcus suis P1/7]
 gi|319758658|gb|ADV70600.1| superfamily II DNA/RNA helicase [Streptococcus suis JS14]
          Length = 514

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 147/371 (39%), Positives = 230/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  ++ AV  AG+  P+PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTDLQLSEDILLAVEKAGFETPSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++   +LI+ PTRELA Q  +   K+G+   + V  + GG   E Q K L 
Sbjct: 61  NKIDTNNQAIQ---SLIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L ++ +E L++DEAD ML+MGF+  I+ I   VP +RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPESRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + ++++   F++ P+ +++     T   ++  ++    +  +K   + +L+ 
Sbjct: 178 LLFSATMPEPIKRIGVKFMKEPEHVKIAAKELTNVNVDQYYL--RVKEHEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLAII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 EDLTKKRMKGL 365


>gi|227112581|ref|ZP_03826237.1| ATP-dependent RNA helicase DeaD [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 627

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 146/377 (38%), Positives = 237/377 (62%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLNTSILNALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   +  ++ P+ L+L PTRELA QVA+    + K+ + + V  L GG  ++ Q + L  
Sbjct: 68  L---KPELKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVALYGGQRYDVQLRALRG 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + +P   QT 
Sbjct: 125 GAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F+++P+ + + +  +T   I   +     Q  +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTV--QGMRKNDALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   +   +++++
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|306783973|ref|ZP_07422295.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu003]
 gi|308331209|gb|EFP20060.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu003]
          Length = 563

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 145/361 (40%), Positives = 221/361 (61%), Gaps = 9/361 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL + P+V+ A+ D GY  PT IQ  TIP ++   DV G+AQTGTGKTA+F +PML+ 
Sbjct: 15  FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++      ++P+ L+L PTRELA QVA+ F +YG   + L V  + GG  +  Q   L R
Sbjct: 75  ID---ITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRR 131

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  R  L ++ ++ LV+DEAD ML MGF   ++ I S  P  +Q  
Sbjct: 132 GAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVA 191

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K+S  +L +P  +     ++  E I   ++    Q ++K   L ++L+ 
Sbjct: 192 LFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVDENISQSYI----QVARKMDALTRVLEV 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  I+F   K+    +   L  +GFS  AI G++ Q  R + ++  ++G I ++VA
Sbjct: 248 E-PFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  ++  + AIE
Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366

Query: 362 K 362
           K
Sbjct: 367 K 367


>gi|242240743|ref|YP_002988924.1| ATP-dependent RNA helicase DeaD [Dickeya dadantii Ech703]
 gi|242132800|gb|ACS87102.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
          Length = 621

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 146/377 (38%), Positives = 236/377 (62%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLSAPILNALSDMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           +      ++ P+ L+L PTRELA QVA+   ++ K+ + + V  L GG  ++ Q + L +
Sbjct: 68  VNP---ELKAPQILVLAPTRELAVQVAEACGEFSKHMHGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + +P   QT 
Sbjct: 125 GPQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPDGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F+ +P+ + + +  +T   I   +   Y    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGM--RKNEALIRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   +   +++++
Sbjct: 302 TDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|157375528|ref|YP_001474128.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157317902|gb|ABV37000.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 462

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 153/373 (41%), Positives = 231/373 (61%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ A+ + GY+ PTPIQ + IPL L+  ++   AQTG+GKTA+FVLP+L
Sbjct: 1   MSFSTLGLSAPILNAISELGYLTPTPIQAEAIPLALKGKNLIAAAQTGSGKTATFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +    R +  R LIL PTRELA QV  + E YGKN NL    + GG+ +  Q + L
Sbjct: 61  EMLARSETQRKKRARALILTPTRELAVQVCKSIEVYGKNLNLKSIAIYGGVDYAPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR+ D + +  +  + IE+LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IDGVDIVVATPGRLRDLYTQRAIHFDEIEMLVLDEADRMLDMGFIEDITKIIDTLPEERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ ++++++++ + N  ++  N   +    I+   +       KK ALL  L+
Sbjct: 181 NLLFSATLSRQVRELAKDTVSNAIQLSFNKERAGKPNIDQWLITV--DKDKKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++  +  +IF   K     L   LEK+G     IH    Q  R KIL++FK G I+ +
Sbjct: 239 -NENNWQQALIFIETKHGAGKLVSQLEKRGIEAECIHSGRTQAIREKILADFKTGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++ ++ARG+DI  +  V N+D+P  A+ Y+HRIGRTGRAG  G+A +LV+K+D K++  
Sbjct: 298 ISTGVSARGIDIDVLPLVINYDLPFPADEYVHRIGRTGRAGAAGEAISLVSKDDFKNLCM 357

Query: 360 IEK----LIEKKV 368
           IE+    LIE+KV
Sbjct: 358 IERRLDHLIERKV 370


>gi|301059813|ref|ZP_07200707.1| putative ATP-dependent RNA helicase RhlE [delta proteobacterium
           NaphS2]
 gi|300446139|gb|EFK10010.1| putative ATP-dependent RNA helicase RhlE [delta proteobacterium
           NaphS2]
          Length = 429

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 149/369 (40%), Positives = 222/369 (60%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F      P+V   V+ AGYV PTPIQ + IP VL  HD+ G+AQTGTGKTA+FVLP+L
Sbjct: 1   MNFKTFNFHPRVAAGVVAAGYVDPTPIQARAIPQVLDNHDIMGVAQTGTGKTAAFVLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   +++    R LI+ PTRELA Q+    E  G+  ++    + GG+    Q + L+
Sbjct: 61  HRLMAKKSK--GVRALIMAPTRELAEQIHQAIEVLGRETHVKSVTVYGGVGIHPQIENLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             A +++  PGR+LDH NR  +  + +E+LV+DEAD+M DMGF+P I+ I + +P  RQT
Sbjct: 119 H-AHIVVACPGRLLDHMNRKTVDFSRLEMLVVDEADQMFDMGFLPDIRRILARLPKKRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++++  + L NP  +++    + AET+ H   A Y         L   L 
Sbjct: 178 LLFSATMPPEIRRLEGDILINPSMVQIGA-VAPAETVRH---ALYPVPHHLKTALLLKLL 233

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +K+ ++F   K    +L   L   G+   ++ GN+ Q  R   L  F++GT +++V
Sbjct: 234 GDTVVKSVLVFTRTKYRAKSLGKKLVSAGYPCASLQGNLSQGRRQAALEGFRDGTYKILV 293

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  V HV N+D+P+  E YIHRIGRTGRA R G+AFT +  ED   + AI
Sbjct: 294 ATDIAARGIDITRVSHVINYDIPSTPEAYIHRIGRTGRATRSGEAFTFMTGEDKGMVRAI 353

Query: 361 EKLIEKKVD 369
            ++++  ++
Sbjct: 354 NRILDASIE 362


>gi|323465797|gb|ADX69484.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus helveticus
           H10]
          Length = 499

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 149/372 (40%), Positives = 236/372 (63%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+  ++ A+  +G+ + TPIQ +TIPL LQ  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++K    ++    +I+EPTRELA Q  +   + G++ +  V ++ GG     Q + L+
Sbjct: 61  QSIDKKEKAIQ---AIIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLK 117

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LDH  RG + ++ +  +V+DEAD MLDMGFI  I++I   V   +Q
Sbjct: 118 HHVPSILVGTPGRLLDHLKRGTIDLDKVNTVVLDEADEMLDMGFIQDIESILKYVKNCKQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + ++ E F+++P  +++     TA+ I+  FV   A+ S+K  ++ +L+
Sbjct: 178 TLLFSATMPKPILRIGEKFMKDPAIVQIKAKELTADLIDQYFVR--AKESEKFDIMCRLI 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      ++F   K+ V  L   L+ +G++   IHG++ Q  RM +L  F+EG + ++
Sbjct: 236 DVQGP-DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGVSVTFVTPNEIGYMRT 354

Query: 360 IEKLIEKKVDWL 371
           IE+L +KK+  L
Sbjct: 355 IEQLTKKKMSPL 366


>gi|320014325|gb|ADV97896.1| putative ATP-dependent RNA helicase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 451

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 163/400 (40%), Positives = 244/400 (61%), Gaps = 12/400 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY+ PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L       KGR   R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    
Sbjct: 61  QLLSQDQQPIKGR---RPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G D+L+ T GR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +
Sbjct: 118 QMMKLRGGVDILVATHGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I       +   ++K  L
Sbjct: 178 PAKRQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSV--HFVDKNRKREL 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L Q++  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G
Sbjct: 236 LSQMI-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ 
Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 354

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           K +  IE+L+++++  +  D    +P ++   I      R
Sbjct: 355 KLLRDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGR 394


>gi|188532510|ref|YP_001906307.1| ATP-dependent RNA helicase DeaD [Erwinia tasmaniensis Et1/99]
 gi|188027552|emb|CAO95399.1| Cold-shock DEAD-box protein A [Erwinia tasmaniensis Et1/99]
          Length = 636

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 146/377 (38%), Positives = 237/377 (62%), Gaps = 11/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  ++ ++   GYVKP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 11  FADLGLNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHN 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     V+ P+ L+L PTRELA QVA+    + K+   L V  L GG  ++ Q + L +
Sbjct: 71  IDP---TVKAPQILVLAPTRELAVQVAEAVTDFSKHMRGLNVVALYGGQRYDVQLRALRQ 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 128 GPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGHQTA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++ F+++P+ + + +  +T   I   +   +  Y +K   L + L++
Sbjct: 188 LFSATMPEAIRRITKRFMKDPQEVRIQSSLTTRPDISQSY---WTAYGRKTDALTRFLEA 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 245 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 304 TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 363

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 364 RTMKLTIPEVELPNAEL 380


>gi|91792246|ref|YP_561897.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91714248|gb|ABE54174.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 433

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 151/370 (40%), Positives = 229/370 (61%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P+++ A+ + GY   TP+Q + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MKFESFSFAPEILRAIAECGYQNMTPVQQQAIPAIRRGEDVLASAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             + +    V+    R LIL PTRELAAQVADN   Y K+ N++V  + GG+    Q +K
Sbjct: 61  QKMHERPMTVQHSNARALILTPTRELAAQVADNISAYSKHMNISVLTIYGGMKMATQAQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++GAD+++ TPGR+L+H     L ++N+E LV+DEADRMLDMGF   IQ I   V   R
Sbjct: 121 LKQGADIIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSTDIQKILQAVNKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  ++K++ + L  PK I  +  ++TA T+    V    +  +K  LL +L
Sbjct: 181 QNLLFSATFSTAVKKLANDMLDKPKIISADKQNTTAATVSQ--VVYPVEQRRKRELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +++  +  ++F   + +   L   L   G     +HG   Q SR + L  F EG +++
Sbjct: 239 IGTKN-WQQVLVFTATRADADKLVTELNLDGIPSAVVHGEKAQGSRRRALREFIEGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDI  + +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLA 357

Query: 359 AIEKLIEKKV 368
            IEKLI +K+
Sbjct: 358 DIEKLIGQKI 367


>gi|312864570|ref|ZP_07724801.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus downei
           F0415]
 gi|311099697|gb|EFQ57910.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus downei
           F0415]
          Length = 521

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 232/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  ++ AV  AG+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELHLAEDILQAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      ++    L++ PTRELA Q  +   ++G+   + V  + GG   + Q K L 
Sbjct: 61  NKIAIDNNVIQ---ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIDKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISHVPDERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T++ +E  ++    +  +K   + +L+ 
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTSDNVEQFYI--RVKEREKFDTMTRLID 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   K+ V  L   L+ +G+    IHG++DQ  R++++ +FK   + ++V
Sbjct: 236 IEQP-ELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ GK+ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGKSVTFVSPNEMGYLSII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKRMKGL 365


>gi|219851679|ref|YP_002466111.1| DEAD/DEAH box helicase domain protein [Methanosphaerula palustris
           E1-9c]
 gi|219545938|gb|ACL16388.1| DEAD/DEAH box helicase domain protein [Methanosphaerula palustris
           E1-9c]
          Length = 550

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 154/368 (41%), Positives = 227/368 (61%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+S ++  A++D G+ +PTPIQ   IPL+ Q  DV G AQTGTGKTA+F +P L  
Sbjct: 29  FEALGISKEIQRAIVDLGFEEPTPIQQMAIPLIHQGFDVIGQAQTGTGKTAAFGIPTL-- 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKLE 120
            EK     +  + LIL PTREL  Q+A+   K  + Y   +A+L   GG P E Q   L 
Sbjct: 87  -EKIDPLDKHVQALILSPTRELTIQIAEELSKLAR-YRRGIAILPIYGGQPIERQFDALR 144

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V+I TPGR++DH  RG L+ ++++ +V+DEAD MLDMGF   I+ I    P  RQT
Sbjct: 145 RGVQVVIGTPGRVMDHMRRGTLVFDHVKTVVLDEADEMLDMGFRDDIELILKTTPSDRQT 204

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+  + ++++ F ++PK ++V     T   +E  +     + S K   L +LL 
Sbjct: 205 TLFSATMSQPILELTKRFQKSPKMVKVTHKELTVAAVEQIYYE--VRESLKLEALARLLD 262

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  K  +IFCN K+ V  L   L+ +G++  A+HG++ Q  R +++  F+ G I ++V
Sbjct: 263 IYNP-KLTLIFCNTKRRVDELVGQLQVRGYAAEALHGDLKQSQRDRVMGRFRSGGIDILV 321

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+  VFN+D+P   E Y+HRIGRTGRAGR G+AFT V+ ++I  I  I
Sbjct: 322 ATDVAARGIDVDDIEAVFNYDIPQDEEYYVHRIGRTGRAGRTGRAFTFVSGKEIWKIRDI 381

Query: 361 EKLIEKKV 368
           ++    +V
Sbjct: 382 QRYTNTRV 389


>gi|15677281|ref|NP_274434.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
 gi|7226661|gb|AAF41783.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
 gi|316985805|gb|EFV64748.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           H44/76]
 gi|319410671|emb|CBY91048.1| putative ATP-dependent RNA helicase [Neisseria meningitidis WUE
           2594]
 gi|325128474|gb|EGC51354.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           N1568]
 gi|325130493|gb|EGC53250.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           OX99.30304]
 gi|325136534|gb|EGC59138.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M0579]
 gi|325140373|gb|EGC62894.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           CU385]
 gi|325199961|gb|ADY95416.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           H44/76]
          Length = 457

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 160/423 (37%), Positives = 252/423 (59%), Gaps = 21/423 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +K  LL++
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTIQKRNLLER 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G ++
Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416
           ++I++L   K+             +E+I+  +     +    P+K    + R++N Y S 
Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRYESA 409

Query: 417 KSH 419
           K+ 
Sbjct: 410 KAQ 412


>gi|307721464|ref|YP_003892604.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979557|gb|ADN09592.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 423

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 154/370 (41%), Positives = 233/370 (62%), Gaps = 9/370 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LG+   ++ A+ D GY +PT +Q + IPLVL + DV   AQTGTGKTA+F LP  
Sbjct: 1   MSFEKLGIFKPLLDAINDLGYKEPTLVQTRAIPLVLGKKDVFATAQTGTGKTAAFALP-- 58

Query: 61  TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            IL+K R  V     R +IL PTREL+ Q+ ++   Y K  ++   +L+GG   + Q + 
Sbjct: 59  -ILQKMRKHVESKGVRAIILSPTRELSIQIYEDITAYSKYMDIKTTILVGGKDLQKQREA 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G +++I TPGR+L+H   G L + ++E+ V+DEADRMLDMGF   I+ I  L+P   
Sbjct: 118 LKKGTEIVIATPGRLLEHIENG-LSLKDVEVFVLDEADRMLDMGFTKDIRKIHPLLPKRH 176

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D+++K+S+  L  P  IE    ++T +TI    VA      +K  LL  L
Sbjct: 177 QTLLFSATFSDKVRKLSKLILTKPAFIETAKKNTTVDTINQ--VAYLVDTVRKAELLAYL 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S++     ++F   K +   L   L+K G     IHG+  + +R+K L+ FKEG I++
Sbjct: 235 IGSRN-FPQVLVFTRTKVSADALSEELKKDGLKCGVIHGDRTKANRLKTLNQFKEGKIRV 293

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RGLDI ++ +V N+++P+  E+Y+HR+GRTGRAGR G+A +L+   +   I 
Sbjct: 294 LVATDIASRGLDIEELPYVINYELPSIPEDYVHRVGRTGRAGREGEAISLIDIYEKYDIK 353

Query: 359 AIEKLIEKKV 368
            IEKLI +K+
Sbjct: 354 DIEKLIGQKI 363


>gi|226229135|ref|YP_002763241.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca
           T-27]
 gi|226092326|dbj|BAH40771.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca
           T-27]
          Length = 594

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 154/372 (41%), Positives = 216/372 (58%), Gaps = 9/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  LG+ PK+  A++  GY +PTP+Q   IP +L+  DV  +A TGTGKTA+F LP+LT 
Sbjct: 16  FGALGVHPKIAEALVGLGYEEPTPVQRAAIPPLLEGKDVLALAATGTGKTAAFSLPLLTR 75

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I EKGR     P  LIL PTRELA QVA+   +YGK   L    + GG   E Q + L R
Sbjct: 76  IAEKGRRAGNGPGVLILVPTRELAMQVAEAVHRYGKPLGLQALAVYGGASMELQVRALRR 135

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV+I TPGR +DH  RG L+ + +  +V+DEAD MLDMGF   ++ I    P  +QT 
Sbjct: 136 GVDVVIATPGRAVDHIKRGTLVFDGLSAVVLDEADEMLDMGFAEELEAILDATPENKQTA 195

Query: 182 LFSATMTDELQKVSENFLQNPKRI----EVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           LFSAT+   +  +++  L+ P  +    EV     +A   +  +V + A   K  AL + 
Sbjct: 196 LFSATLPPRIGGIAQKHLRQPVHVKVEREVVAEGESARVRQVAYVVSRAH--KMPALARV 253

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   Q T  + I+FC  +  V  L  +L  +G    A+HG + Q  R +++  F+   + 
Sbjct: 254 LDIEQPT--SAIVFCRTRTEVDELSETLTARGLRAEALHGGLSQDQRDRVMQKFRARKVD 311

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L++A+D+AARGLD+  V HV NFDVP  AE Y+HRIGRTGRAGR G A T     + + +
Sbjct: 312 LLIATDVAARGLDVKHVSHVVNFDVPVDAETYVHRIGRTGRAGREGVAVTFAEPRENRLL 371

Query: 358 DAIEKLIEKKVD 369
             IE+   +K++
Sbjct: 372 RNIERQTGQKIE 383


>gi|328956669|ref|YP_004374055.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4]
 gi|328672993|gb|AEB29039.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4]
          Length = 533

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 150/381 (39%), Positives = 231/381 (60%), Gaps = 13/381 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGL+P+++ +V   G+ + TPIQ +TIPL L+  DV G AQTGTGKTA+F LPML
Sbjct: 6   LKFTELGLAPELLKSVERLGFEEATPIQAQTIPLALEGKDVIGQAQTGTGKTAAFGLPML 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    L++ PTRELA Q  +   +  ++  + V ++ GG     Q + L+
Sbjct: 66  QKIDVNNRNVQ---GLVIAPTRELAIQTQEELFRLSRDKKIRVQVVYGGADISRQIRALK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  L + ++E LV+DEAD ML+MGFI  I+ I   VP  RQT
Sbjct: 123 DAPHIVVGTPGRLLDHIKRKTLKLGHVETLVLDEADEMLNMGFIDDIETIIHEVPAERQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+ NP+ +++   + +   IE  FV    +  +K  ++ +L  
Sbjct: 183 LLFSATMPPAIKRIGVRFMSNPEHVQIKATTMSDSLIEQFFV--RCKDFEKFDIMTRLFD 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q T +  IIF   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 241 VQ-TPELTIIFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLKSFKTGKLDILV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T +   ++ ++  I
Sbjct: 300 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGVSVTFITPNEMGYLRVI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPP 381
           E L +K        ++ L PP
Sbjct: 360 EDLTKKT-------MTPLRPP 373


>gi|329120622|ref|ZP_08249285.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327460846|gb|EGF07180.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 455

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 149/363 (41%), Positives = 230/363 (63%), Gaps = 8/363 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+ + GY  PTPIQ   IP VL  HD+   AQTGTGKTA+F+LP L  
Sbjct: 4   FSSLGLGAEIVSALAEQGYETPTPIQAAAIPKVLAGHDLLAAAQTGTGKTAAFMLPALER 63

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 64  LKRYANTSASPAMHPVRMLVLTPTRELADQIDKNVQAYIKNLPLRHTVLFGGVNMDKQTA 123

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  +    IE +V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 124 DLRVGCEIVVATVGRLLDHVKQKNINFAKIETVVLDEADRMLDMGFIDDIRAIMGMLPRE 183

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT  D ++K++++F+  P+ +EV   ++    +E   +A      +K  LL++
Sbjct: 184 RQTLLFSATFADPIRKLAQDFMNAPETVEVAAQNTANANVEQHVIAV--DTFEKRRLLER 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+   D +K  I+FC  K++V  +   L+++G +  +IHG+  Q++R++ L+ FKEG ++
Sbjct: 242 LIVDLD-IKQVIVFCKTKQSVDQVTRDLQRRGLAAQSIHGDKSQQTRLETLNAFKEGGLR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 301 VLVATDVAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDENEQKMF 360

Query: 358 DAI 360
           +A+
Sbjct: 361 EAV 363


>gi|271499180|ref|YP_003332205.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270342735|gb|ACZ75500.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
          Length = 624

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 146/377 (38%), Positives = 237/377 (62%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLS  ++ A+ + GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FASLGLSAPILNALSEMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +   +A ++ P+ L+L PTRELA QVA+   ++ K+   + V  L GG  ++ Q + L +
Sbjct: 68  I---KADLKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + +P   QT 
Sbjct: 125 GPQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F+ +P+ + + +  +T   I   +   Y    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGM--RKNEALIRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
            I KL   +V+  N +L
Sbjct: 362 RIMKLTIPEVELPNAEL 378


>gi|255691171|ref|ZP_05414846.1| ATP-dependent RNA helicase RhlE [Bacteroides finegoldii DSM 17565]
 gi|260623074|gb|EEX45945.1| ATP-dependent RNA helicase RhlE [Bacteroides finegoldii DSM 17565]
          Length = 374

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 152/371 (40%), Positives = 229/371 (61%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL +   ++ A+ + GY+ PT IQ K IP  L + D+ G AQTGTGKTASF +P++
Sbjct: 1   MTFRDLNIIEPILKAIEEKGYIAPTSIQEKAIPAALAKRDILGCAQTGTGKTASFAIPII 60

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L+  +   + +  + LIL PTRELA Q+++  + Y K   +   ++ GG+    Q   
Sbjct: 61  QHLQANKETDKRQGIKALILTPTRELAMQISECIDDYSKYTRVRHGVIFGGVNQRPQVDM 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD  N+G + + NIE  V+DEADRMLDMGFI  I+ I   +P  +
Sbjct: 121 LRKGIDILVATPGRLLDLINQGHIHLTNIEYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM D +  ++++ L+NP +I +   SST ++I+   +  + +  +K  LL  +
Sbjct: 181 QTLFFSATMPDSIIALTKSLLKNPVKIYITPKSSTVDSIKQ--IIYFVEKKEKSQLLISI 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ  +  ++ +IF   K N   +   L K G    AIHGN  Q +R   L NFK G  ++
Sbjct: 239 LQKAED-RSVLIFSRTKHNADKIVRILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTKV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A T  ++E+ K ++
Sbjct: 298 MVATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNEGTALTFCSQEERKLVN 357

Query: 359 AIEKLIEKKVD 369
            I+KL  KK++
Sbjct: 358 DIQKLTGKKLN 368


>gi|332521202|ref|ZP_08397660.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332043295|gb|EGI79492.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 411

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 159/384 (41%), Positives = 234/384 (60%), Gaps = 8/384 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L+  ++ A+ + GY  PT IQ +TIPLVL + DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFKDLKLNRPLLRAIAEKGYDNPTLIQERTIPLVLNKKDVIASAQTGTGKTAAFALPIL 60

Query: 61  TIL---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L   +      +  R LI+ PTRELA Q+ +NF+ Y    NL   ++ GG   E Q  
Sbjct: 61  QLLYDKQDAAKNQKKVRALIISPTRELAIQIQENFQDYLIYTNLRSTVIFGGASIEPQKD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +G D+LI TPGR+LD   + ++ ++ +E LV+DEAD MLDMGFI  ++ I  L P  
Sbjct: 121 VLRKGVDILIATPGRLLDLHKQDEVNLDYVETLVLDEADLMLDMGFIDDVKKIERLCPAE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +Q LLFSATM  +++++++  L NPKR+EV+  SST+  I       Y    KK  L   
Sbjct: 181 KQILLFSATMPYKVEQLAKTILNNPKRVEVSQNSSTSTNINQALY--YVPKPKKIELCLH 238

Query: 238 LLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           LL  ++T+K   IIF   K  V  L  +L +  +   +IHG+  Q  R + L+ FK+  +
Sbjct: 239 LL--RNTVKGKIIIFRRTKYGVDKLEKTLLRNNYKADSIHGDKSQTLRQEALNRFKKNEV 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARG+DI +V  V NFD+PN  E Y+HRIGRTGRAG  G A++  + ++ ++
Sbjct: 297 NILIATDVAARGIDIENVDAVINFDMPNVPETYVHRIGRTGRAGNTGMAYSFCSADEKEY 356

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNP 380
           I  I++LI  ++D +      L+P
Sbjct: 357 IKTIQQLINLQLDIVEDHPYPLDP 380


>gi|315505697|ref|YP_004084584.1| dead/deah box helicase domain protein [Micromonospora sp. L5]
 gi|315412316|gb|ADU10433.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5]
          Length = 585

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 148/367 (40%), Positives = 217/367 (59%), Gaps = 3/367 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL  +++ A+   GY +PTPIQ + IP +L   D+ G A TGTGKTA+F LP+L  
Sbjct: 22  FADLGLRTELLGALSALGYEEPTPIQREAIPPLLAGQDLLGQAATGTGKTAAFALPLLQR 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +  GRA    P +L+L PTRELA QV++ F +YGK+    V  + GG P   Q + L+ G
Sbjct: 82  MPVGRAEGD-PVSLVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALDHG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR LDH  RG L +  +  +V+DEAD MLDMGF   I+ I    P  RQT+L
Sbjct: 141 VDVVVATPGRALDHIARGTLRLGALSTVVLDEADEMLDMGFAEDIEAILEHAPAGRQTVL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQS 241
           FSATM   +  ++   L +P RI +      A        + Y    + K A L ++L  
Sbjct: 201 FSATMPARIDGLARQHLTDPVRIRIERERPVAGEAPRVRQSAYIVARAHKPAALGRVLDV 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + +    I+FC  ++ V  L  ++  +G+   A+HG + Q  R +++   + GT  L+VA
Sbjct: 261 E-SPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVA 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+DVP+  E+Y+HRIGR GRAGR G A TL    + + +  IE
Sbjct: 320 TDVAARGLDVEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIE 379

Query: 362 KLIEKKV 368
           ++  +++
Sbjct: 380 RVTGQRI 386


>gi|219847371|ref|YP_002461804.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219541630|gb|ACL23368.1| DEAD/DEAH box helicase domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 550

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 144/367 (39%), Positives = 224/367 (61%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLS  ++  + + GY +PTPIQ + IPL+L   DV   AQTGTGKTA+F LPM+  
Sbjct: 4   FAALGLSDALLHTLRELGYDEPTPIQAQAIPLLLAGRDVIAQAQTGTGKTAAFALPMIEQ 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +        + + L+L PTRELA QVA+   +YG++  L V  + GG P E Q + L +G
Sbjct: 64  VTDEP----VVQALVLAPTRELAVQVAEAVHRYGRHRALRVLPIYGGQPIERQLRGLAQG 119

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+LDH  RG L  +++ ++V+DEAD MLDMGF   ++ I  L P  RQT L
Sbjct: 120 VQVVVGTPGRVLDHLRRGTLRFDHLRLVVLDEADEMLDMGFAEELEAILQLTPAERQTAL 179

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +Q ++  + + P R+ +     T   I   +    A+   K   L ++L + 
Sbjct: 180 FSATLPPAVQSLTLRYTRQPVRVSIAAEQLTTPHIRQIYYEILAR--DKLDALCRVLDA- 236

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  +  I+FC  ++ V  +   L+ +G++  ++HG++ Q  R +++  F+EG + ++VA+
Sbjct: 237 EMPQLAIVFCRTRQEVDEIGERLQGRGYAAESLHGDLSQAVRDRVMRRFREGQLDVLVAT 296

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI +V HV N+DVP   E+Y+HRIGRTGRAGR G A T +   + + +  IE+
Sbjct: 297 DVAARGLDIAEVSHVINYDVPTDPESYVHRIGRTGRAGRAGVAITFITPRERRMLQTIER 356

Query: 363 LIEKKVD 369
           +   +++
Sbjct: 357 VTRTRIE 363


>gi|46143724|ref|ZP_00134573.2| COG0513: Superfamily II DNA and RNA helicases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208057|ref|YP_001053282.1| cold-shock DEAD box protein A-like protein [Actinobacillus
           pleuropneumoniae L20]
 gi|190149888|ref|YP_001968413.1| cold-shock DEAD box protein A-like protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303252206|ref|ZP_07338374.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|126096849|gb|ABN73677.1| cold-shock DEAD box protein A-like protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189915019|gb|ACE61271.1| cold-shock DEAD box protein A-like protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302648989|gb|EFL79177.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
          Length = 619

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 147/370 (39%), Positives = 233/370 (62%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   ++ AV D G+V P+PIQ +TIP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 6   LTFADLGLPQSILDAVNDMGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             ++  +   R P+ L++ PTRELA QVAD  E++ KN   + V  + GG  ++ Q + L
Sbjct: 66  AQIDPTK---RHPQMLVMAPTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G+ V++ TPGRILDH  RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 KQGSQVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+Q+P+ +++     +A  I   +      + K  ALL+ L 
Sbjct: 183 TALFSATMPEPIRRITRRFMQDPQEVKIQATQRSAPDITQSYWLVNG-FRKNDALLRFL- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++    E+ G+   A++G++ Q++R + L   K G + ++
Sbjct: 241 -EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V NFD+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 300 VATDVAARGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359

Query: 360 IEKLIEKKVD 369
           IE L++K +D
Sbjct: 360 IEHLMKKPID 369


>gi|329295922|ref|ZP_08253258.1| ATP-dependent RNA helicase DeaD [Plautia stali symbiont]
          Length = 617

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 145/379 (38%), Positives = 239/379 (63%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  ++ ++   GYVKP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     VR P+ L+L PTRELA QVA+   ++ K+   + V  L GG  ++ Q + L +
Sbjct: 68  VDPS---VRAPQILVLAPTRELAVQVAEAMTEFSKHMRGINVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++++  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSSLRGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++ F+++P+ + + +  +T   I   +   +  Y +K   L + L++
Sbjct: 185 LFSATMPEAIRRITKRFMKDPQEVRMQSSITTRPDISQSY---WTAYGRKSDALVRFLEA 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 242 ED-FDAAIIFVRTKNATLEVAETLERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 301 TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 360

Query: 359 AIEKLIEKKVDWLNGDLSS 377
              KL   +V+  N +L S
Sbjct: 361 RTMKLTIPEVELPNAELLS 379


>gi|294142501|ref|YP_003558479.1| ATP-dependent RNA helicase DeaD [Shewanella violacea DSS12]
 gi|293328970|dbj|BAJ03701.1| ATP-dependent RNA helicase DeaD [Shewanella violacea DSS12]
          Length = 617

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 232/371 (62%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ ++ D GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L+ 
Sbjct: 8   FRELGLSEPLLRSLDDLGYEKPTPIQAASIIPLMAGKDILGQAQTGTGKTGAFALPLLST 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++   + +  P+ L+L PTRELA QVA+ F  Y K+   L V  + GG     Q   L R
Sbjct: 68  ID---SSLNAPQILVLAPTRELAVQVAEAFASYAKHMKGLHVLPIYGGQSMHQQLNALRR 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L +++++ +V+DEAD ML MGFI  I+ I    P  RQ  
Sbjct: 125 GPQVIVGTPGRVMDHMRRGTLKLDSLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQLA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +++++V+  +L  P  +++   ++T ETIE  FV   +Q++K  AL++ L   
Sbjct: 185 LFSATMPEQIKRVANKYLTEPVHVKIAATTATVETIEQRFVQV-SQHNKLEALVRVL--E 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            ++ +  IIF   + + V L   LE +G++   +HG+++Q++R + +   K G++ +++A
Sbjct: 242 VESTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGSLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +GHV N+D+P   E Y+HRIGRT RAGR G A   V   +++ +  IE
Sbjct: 302 TDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTDRAGRSGMAILFVTHREMRMLRTIE 361

Query: 362 KLIEKKVDWLN 372
           +  + ++  ++
Sbjct: 362 RATKSRISPMD 372


>gi|254457480|ref|ZP_05070908.1| cold-shock deAd box protein a [Campylobacterales bacterium GD 1]
 gi|207086272|gb|EDZ63556.1| cold-shock deAd box protein a [Campylobacterales bacterium GD 1]
          Length = 531

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 149/364 (40%), Positives = 225/364 (61%), Gaps = 7/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGLS  ++ +V  AG+V P+PIQ   IPL+LQ  D+ G A TGTGKTA+F LP L
Sbjct: 18  LTFDDLGLSQDILRSVKQAGFVTPSPIQAAAIPLILQGRDIVGQAHTGTGKTAAFGLPAL 77

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R  V +   L++ PTRELA QV+D   KYG+N N     + GG  +  Q   ++
Sbjct: 78  NNIDV-RNGVEI---LVITPTRELATQVSDELFKYGRNINAKTVTVYGGSSYNRQIDLID 133

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR+LD   +G +      I+V+DEAD MLDMGF+  I  I S +P  RQT
Sbjct: 134 RGASVVVATPGRLLDILKKGLVKNFTPSIVVLDEADEMLDMGFLDDINEIFSYLPTKRQT 193

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ ++E  L NP+ I +    +T   IE  +     + S++   + +L+ 
Sbjct: 194 LLFSATMPKPIKLLAERILDNPEFISITKGETTNSDIEQLYYVI--EESERDDAIIRLMD 251

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+DT K+ ++FC  K  V  L + L   G+    +HG+++QR R  ++  FK  +++++V
Sbjct: 252 SEDTKKS-VVFCRTKSEVDRLSNVLSNAGYLANGLHGDMEQRQRETVIKGFKSNSVKVLV 310

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ + ++ HVFN+ +P   E+Y+HRIGRTGRAG  GKA TL+   + K +  I
Sbjct: 311 ATDVAARGIHVDNISHVFNYHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRI 370

Query: 361 EKLI 364
           ++ +
Sbjct: 371 KQKV 374


>gi|56965701|ref|YP_177435.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
 gi|56911947|dbj|BAD66474.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
          Length = 493

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 153/370 (41%), Positives = 225/370 (60%), Gaps = 11/370 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F   GL   VV AV + G+ + TPIQ +TI LVL   DV G AQTGTGKT +F +P++ 
Sbjct: 3   NFEQFGLDASVVQAVTNIGFTEATPIQQETIELVLAGKDVIGQAQTGTGKTGAFGIPLVN 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+    L+L PTRELA QV     ++G+   +   ++ GG  F  Q + L++
Sbjct: 63  RIDSSNPLVQ---GLVLAPTRELANQVEQALRQFGRVKGVRTTVVYGGEDFGKQIRSLKQ 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQT 180
              +++ TPGR+LDH  R  + + +IE +V+DEAD ML+MGFI  I+ I +  P  TRQT
Sbjct: 120 RPHIIVATPGRLLDHMRRKTIRLESIETVVLDEADEMLNMGFIEDIETILAETPQETRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQQL 238
           LLFSATM   ++ ++  F++NP RI V     T E I   F+  +   ++   C L+   
Sbjct: 180 LLFSATMPKRMESLASKFMKNPTRIAVKAKEVTMENIAQQFIEVHEREKFDVLCRLID-- 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L++ D     I+F   K+ V  L  +L K+G+    +HG+++Q  R  +L  FKEG I +
Sbjct: 238 LETPDL---SIVFGRTKRRVDELAEALIKRGYRAEGLHGDLNQAKRNSVLRKFKEGLIDV 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  V HVFNFD+P   E+Y+HRIGRTGRAGR G A TL  K + +H+ 
Sbjct: 295 LVATDVAARGLDISGVTHVFNFDLPQDPESYVHRIGRTGRAGRSGIAITLATKPEREHVK 354

Query: 359 AIEKLIEKKV 368
            IE + ++++
Sbjct: 355 LIESVSKRRM 364


>gi|328675823|gb|AEB28498.1| Cold-shock DEAD-box protein A [Francisella cf. novicida 3523]
          Length = 570

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 146/363 (40%), Positives = 229/363 (63%), Gaps = 5/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGLS  +V  V++ GY  PTPIQ   IP +L   DV G AQTGTGKTA+F LP++ 
Sbjct: 8   DFSQLGLSQDIVDTVINLGYETPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++  R+R + P+ L+L PTRELA QVA+ F+ + KN  NL VA + GG  + +Q + L+
Sbjct: 68  NIDL-RSRDKSPQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQIRALK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ T GR++DH  +G L ++N+  LV+DEAD ML MGFI  ++ + S +    Q 
Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRFVLSHISEQCQR 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++  + E +L+NP +I+V   + TA T+   F+       +K   L +LL+
Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKG--FRKIDALDRLLE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++T    IIF   K + + +  +L+  G+ V AI+G++ Q  R  I+  F+     ++V
Sbjct: 245 IEET-DGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRNAKSDILV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+  + HV N+D+PN  + Y+HRIGRTGRAGR G + +LV  ++++ +  +
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363

Query: 361 EKL 363
           E+ 
Sbjct: 364 ERF 366


>gi|302205951|gb|ADL10293.1| DEAD-box helicase [Corynebacterium pseudotuberculosis C231]
          Length = 650

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 145/361 (40%), Positives = 225/361 (62%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   ++ AV   G+  P+PIQ +TIP++++ HDV G+AQTGTGKTA+F LP   I
Sbjct: 68  FEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAFALP---I 124

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L +   + R P+ LIL PTRELA QVAD+F+ +  +  ++ V  + GG  +  Q   L R
Sbjct: 125 LSRINVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRR 184

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  +G L ++N+  LV+DEAD ML MGF   I+ I    P  +Q  
Sbjct: 185 GAQIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERILEDTPADKQVA 244

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++S+ ++++P+ I+V + + T   I   F+     +  K   L ++L+ 
Sbjct: 245 LFSATMPNGIRRLSKQYMKDPREIQVKSETRTNTNITQRFL--NVAHRNKLDALTRILEV 302

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  I+F   K     +   L  +GFS  AI+G+I Q  R + +   K+G + ++VA
Sbjct: 303 TE-FEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 361

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HVFN+D+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 362 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 421

Query: 362 K 362
           +
Sbjct: 422 R 422


>gi|300858229|ref|YP_003783212.1| hypothetical protein cpfrc_00811 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685683|gb|ADK28605.1| hypothetical protein cpfrc_00811 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302330505|gb|ADL20699.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 1002]
 gi|308276186|gb|ADO26085.1| DEAD-box helicase [Corynebacterium pseudotuberculosis I19]
          Length = 660

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 145/361 (40%), Positives = 225/361 (62%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   ++ AV   G+  P+PIQ +TIP++++ HDV G+AQTGTGKTA+F LP   I
Sbjct: 68  FEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAFALP---I 124

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L +   + R P+ LIL PTRELA QVAD+F+ +  +  ++ V  + GG  +  Q   L R
Sbjct: 125 LSRINVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRR 184

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  +G L ++N+  LV+DEAD ML MGF   I+ I    P  +Q  
Sbjct: 185 GAQIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERILEDTPADKQVA 244

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++S+ ++++P+ I+V + + T   I   F+     +  K   L ++L+ 
Sbjct: 245 LFSATMPNGIRRLSKQYMKDPREIQVKSETRTNTNITQRFL--NVAHRNKLDALTRILEV 302

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  I+F   K     +   L  +GFS  AI+G+I Q  R + +   K+G + ++VA
Sbjct: 303 TE-FEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 361

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HVFN+D+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 362 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 421

Query: 362 K 362
           +
Sbjct: 422 R 422


>gi|330504959|ref|YP_004381828.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
 gi|328919245|gb|AEB60076.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
          Length = 447

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 153/374 (40%), Positives = 227/374 (60%), Gaps = 8/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  + D  Y  PTP+Q + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRTLADLDYKTPTPVQSQAIPTVLKGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               LE  +      R L+L PTRELA QV  +F+ YG++  LT   + GG+    Q  K
Sbjct: 61  QRLTLEGPQVASNSVRALVLTPTRELAEQVLQSFQAYGQHLPLTSYAVYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD + +  +  + ++ L++DEADRMLD+GF   +  + S +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLYRQNAVKFSQLQTLILDEADRMLDLGFARELDELFSALPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D +++++   L++P  +EV+  ++ A+T++   +       +K  L   L
Sbjct: 181 QTLLFSATFSDAIRQMAGELLRDPLSVEVSPRNAAAKTVKQWLIPV--DKKRKSELFLHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ +      ++F   +K V  L   L   G +  +IHG+  Q SR++ L  FK G +Q+
Sbjct: 239 LQVK-RWGQVLVFAKTRKGVDQLEQELLAMGVAADSIHGDKPQPSRLRALERFKAGEVQI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+Y+HRIGRTGRAG  G+A +LV  +++  + 
Sbjct: 298 LVATDVAARGLDIDDLPLVVNLDLPINAEDYVHRIGRTGRAGSTGEAISLVCADEVDQLA 357

Query: 359 AIEKLIE---KKVD 369
           AIE L +   K+VD
Sbjct: 358 AIENLTQQLIKRVD 371


>gi|319642286|ref|ZP_07996945.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_40A]
 gi|317386142|gb|EFV67062.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_40A]
          Length = 422

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 162/414 (39%), Positives = 247/414 (59%), Gaps = 17/414 (4%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
           A+   GY  PTPIQ + IP++L+  D+ G AQTGTGKTA+F +P++  L +   + +  +
Sbjct: 3   ALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLIQRLYQSDHK-KGIK 61

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            LIL PTRELA Q+ +NF++Y     +  A++ GG+P +AQ   L+RG  VLI TPGR+L
Sbjct: 62  ALILTPTRELAIQIGENFDQYAGYTGVKHAVIFGGVPQKAQVDALKRGVQVLIATPGRLL 121

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D  ++G + +  +E  V+DEADRMLDMGFI  I+ +  L+P  RQTL FSATM  E++K+
Sbjct: 122 DLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQTLFFSATMPSEIEKL 181

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           +++ L NP++IEV   SST +TI     + Y    K+   L   L     +++ +IF   
Sbjct: 182 ADSMLTNPEKIEVTPVSSTVDTIRQ---SVYFVEKKEKKDLLLHLLKNPEIESVLIFTRT 238

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K     L   L K      AIHGN  Q +R + L+NFK+ T ++++A+D+AARG+D+  +
Sbjct: 239 KHGADKLARILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLIATDIAARGIDVNQL 298

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV------ 368
            HV N+++PN +E Y+HRIGRTGRAG  G A +    E++ ++  I+KLI  ++      
Sbjct: 299 SHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDIQKLIGLQIPVVKDH 358

Query: 369 DWLN--GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG-FDRRKKNYSSQKSH 419
            W+   G+ +      E  + A+ N   + +    KS G + RRKK   S++  
Sbjct: 359 PWVTVEGEKAQAGKTEELKEKAKANKVYRGS----KSNGDYWRRKKQAQSRQGQ 408


>gi|16077525|ref|NP_388339.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|1881268|dbj|BAA19295.1| ydbR [Bacillus subtilis]
 gi|2632758|emb|CAB12265.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 511

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 150/369 (40%), Positives = 227/369 (61%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS  ++ A+   G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F +P++  
Sbjct: 22  FQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEK 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +      ++    +++ PTRELA QV++   K G++    V  + GG     Q + L++ 
Sbjct: 82  INPESPNIQ---AIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKN 138

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++++ TPGR+LDH NR  + +NN+  +V+DEAD ML+MGFI  I++I S VP   QTLL
Sbjct: 139 PNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLL 198

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +++++E F+  P+ ++V     T   I+  ++    Q  KK   L +LL  Q
Sbjct: 199 FSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLE--VQERKKFDTLTRLLDIQ 256

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM  L  FKEG I+++VA+
Sbjct: 257 -SPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVAT 315

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFDVP   E+Y+HRIGRTGRAG+ G A T +   +   + AIE+
Sbjct: 316 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQ 375

Query: 363 LIEKKVDWL 371
             ++K+D +
Sbjct: 376 TTKRKMDRM 384


>gi|237746640|ref|ZP_04577120.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
 gi|229377991|gb|EEO28082.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
          Length = 461

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 149/394 (37%), Positives = 231/394 (58%), Gaps = 29/394 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL P ++ A+    Y  PTP+Q K IPL ++  D+   +QTG+GKTA+F+LP L
Sbjct: 1   MTFETLGLHPSILKALAGIHYDIPTPVQTKAIPLAIEGKDLLVSSQTGSGKTAAFMLPAL 60

Query: 61  TIL------------------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYG 96
                                      E+ R +   P+ L+L PTRELA Q+  + E+Y 
Sbjct: 61  HRFATQKISETSQKTPNQQRQSAKAKGERARFKAAQPKMLVLTPTRELALQIVSSTEQYS 120

Query: 97  K--NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDE 154
               +  TVA+L GG+P+  Q + L R  ++L+ TPGR++DH   GK+  + +EILV+DE
Sbjct: 121 ACLKHFRTVAIL-GGMPYPKQMQLLARNPEILVATPGRLIDHMQSGKIRFDQLEILVLDE 179

Query: 155 ADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA 214
           ADRMLDMGFI  I+ + +  P TRQT+LFSAT+   + K++ +   + + I + + +S  
Sbjct: 180 ADRMLDMGFIDDIETVIAATPATRQTMLFSATLDGIVGKMARSVTHDAESIHITSSASRH 239

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           E IE   +        K  LL   LQ + ++   ++F   K++   +   L   GFS  A
Sbjct: 240 ENIEQ-MIHYVDDLPHKNRLLAHWLQDR-SLGQALVFTATKRDADLVADRLAIAGFSTAA 297

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + L+  ++G ++++VA+D+AARG+DIP + HVFN+D+P   E+Y+HRIG
Sbjct: 298 LHGDMPQNARNRTLAKLRDGKVKILVATDVAARGIDIPSITHVFNYDLPKFPEDYVHRIG 357

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           RTGRAGRHG A +LV+  D   +  IE+  ++ +
Sbjct: 358 RTGRAGRHGLAISLVSHSDSASMKRIERFTKQTI 391


>gi|220933289|ref|YP_002512188.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219994599|gb|ACL71201.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 602

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 150/373 (40%), Positives = 229/373 (61%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL+P V+ A+ D GY  PTPIQ + IP +L   D+ G AQTGTGKTA+F LP L+ 
Sbjct: 11  FDALGLNPAVLKALTDTGYEAPTPIQAEGIPPLLAGRDLLGQAQTGTGKTAAFALPALSR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+    R ++   L+L PTRELA QVA+ F+ Y ++     V  + GG P+  Q K+L R
Sbjct: 71  LDLKDNRTQV---LVLAPTRELAIQVAEAFQTYARHLPGFHVLPIYGGQPYGIQLKQLSR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  RG L ++ +  LV+DEAD ML MGFI  ++ I    P +RQ  
Sbjct: 128 GAQVVVGTPGRVMDHMRRGTLKLDALRTLVLDEADEMLRMGFIDDVEWILEQTPASRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++V+   L+ P  + + + ++TA TI   +      +  K   L +LL++
Sbjct: 188 LFSATMPEVIRRVAHTHLKEPAEVRIRSATTTATTIRQRYWRVSGLH--KLDALTRLLET 245

Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   +IF   K   V L   L  +G +  A++G+I Q  R +++   K+G + ++
Sbjct: 246 EPFDAM---LIFVRTKTETVELAERLTARGHACEALNGDIPQNQRERVVERLKKGQLDIL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G+A   VA  + + + A
Sbjct: 303 VATDVVARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRTGEAILFVAPREQRMLKA 362

Query: 360 IEKLIEKKVDWLN 372
           IE+   + ++ ++
Sbjct: 363 IERATRQPIEPMH 375


>gi|229918086|ref|YP_002886732.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
 gi|229469515|gb|ACQ71287.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
          Length = 509

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 228/369 (61%), Gaps = 10/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL LS  +V  V   G+ + TPIQ +TIP+ L   DV G AQTGTGKTA+F +P +  
Sbjct: 4   FQDLQLSEALVKGVHKMGFEEATPIQAETIPVALTGVDVLGQAQTGTGKTAAFGIPTI-- 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E+  ++ R  + L+L PTRELA QVA+   K G+   +    + GG   + Q + L++ 
Sbjct: 62  -ERIDSKARQVQALVLAPTRELAIQVAEELNKIGETKRVYALPVYGGQQIDRQIRGLKKN 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++DH  R  + +++I+ +++DEAD ML+MGF+  I+ I + +P  RQTLL
Sbjct: 121 PQIVVATPGRLMDHMKRKTIKLDDIQTVILDEADEMLNMGFVEDIETILAGLPEERQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQQLLQ 240
           FSATM  +++K++E F+++P  I+V     T E I   F+      ++   C L+     
Sbjct: 181 FSATMPPQIKKIAERFMKSPTIIKVKAKEMTVENINQQFLELREGQKFDTLCRLI----- 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D+ +  IIF   KK V  +  +L K+G++   +HG++ Q  R +++  FK GTI ++V
Sbjct: 236 DIDSPELSIIFARTKKRVDEVTEALIKRGYTADGLHGDLTQSKRDQVIRRFKNGTIDILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFDVP   E+Y+HRIGRTGRAG+ G A T +   +   + AI
Sbjct: 296 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGTALTFITPREFGQVKAI 355

Query: 361 EKLIEKKVD 369
           E++  KK++
Sbjct: 356 ERVTNKKMN 364


>gi|218768426|ref|YP_002342938.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
 gi|121052434|emb|CAM08770.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
          Length = 457

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 160/423 (37%), Positives = 251/423 (59%), Gaps = 21/423 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV    +T   +E   +A      +K  LL++
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQDTTNANVEQHIIAV--DTIQKRNLLER 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G ++
Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416
           ++I++L   K+             +E+I+  +     +    P+K    + R++N Y S 
Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRYESA 409

Query: 417 KSH 419
           K+ 
Sbjct: 410 KAQ 412


>gi|206564651|ref|YP_002235414.1| putative ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia
           J2315]
 gi|198040691|emb|CAR56677.1| putative ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia
           J2315]
          Length = 484

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 156/368 (42%), Positives = 225/368 (61%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  +    Y  PTP+Q K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIEPLLHNLQGLNYQTPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLL 60

Query: 61  T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +++ G A      R L+L PTRELA QV  +F +YGK  +L      GG+    Q  K
Sbjct: 61  QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L+NP  I V+ P++TA  I+  +V T  + +K    +   
Sbjct: 181 QTLLFSATFSDEIRTMAAGILRNPVDISVSAPNATASKIKQ-WVVTVDKRNKPGLFMH-- 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +Q+  ++ ++F   +  V  L   LEK G++V  IHG+  Q +R++ L  FK G +Q+
Sbjct: 238 LVAQNKWEHALVFVKTRNGVDYLAVMLEKAGYAVDTIHGDKPQPARLRALERFKAGEVQM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEK 366
           AIE LI +
Sbjct: 358 AIEALIRQ 365


>gi|116327340|ref|YP_797060.1| superfamily II DNA/RNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116332045|ref|YP_801763.1| superfamily II DNA/RNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120084|gb|ABJ78127.1| Superfamily II DNA and RNA helicase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116125734|gb|ABJ77005.1| Superfamily II DNA and RNA helicase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 549

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 164/447 (36%), Positives = 259/447 (57%), Gaps = 25/447 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L PK++ A+ + GY + TPIQ K+IP  L+  D+ G+AQTGTGKT +F++P++
Sbjct: 1   MKFEELSLHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDIIGLAQTGTGKTVAFLIPVV 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL-LIGGIPFEAQNKK 118
            TIL K   +V     L+L PTREL  Q+AD  +K  K+ +   A+ +IGG  +++QNK 
Sbjct: 61  HTILTKNIQKVS---ALVLAPTRELTIQIADEAKKLLKHSDGIRAVPIIGGTDYKSQNKD 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE    +++ TPGR++D    G + ++N+E  V+DEADRMLDMGFI  I+ +       +
Sbjct: 118 LEGLNGIIVATPGRLIDMVKSGSIDISNVEFFVLDEADRMLDMGFIQDIRWLLHKCKNRK 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT++ E+ +++  FL  P  I++N      E I+   V  +    +K   +  L
Sbjct: 178 QTLLFSATLSVEVMRLAYRFLNEPVEIQINPEKIITERIDQKIV--HLGREEKIPYMTNL 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +      GIIF N K N+  + ++L K G  +  I   +DQ+ R+++L +FK G  + 
Sbjct: 236 IVNSKDEGQGIIFTNYKANIPKIVYTLRKYGIPITGISSELDQKKRLRLLRDFKSGKYRY 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ ++  V+N+D+P   ENY+HRIGRT RAGR GKA    ++ D   ++
Sbjct: 296 MVATDVASRGIDVENIDIVYNYDLPQDTENYVHRIGRTARAGRMGKAIGFCSESDYVELE 355

Query: 359 AIEKLIEKKVDWLNGDLSSLN------PPL---EKIDIAQHNHARKNNPIPQ-------K 402
            IEK +++K++ L  +   +       PP    +  D  +  H ++N   P         
Sbjct: 356 KIEKYLKQKIEILEVNEEYIQFPTGKFPPFIGGDSYDREKEVHFKQNGRRPHDRGDRAPH 415

Query: 403 STGFDRR--KKNYSSQKSHIPLKESEK 427
               DRR  K++ S   SH P ++S K
Sbjct: 416 KHDRDRRGDKRHTSHIHSHSPTRDSHK 442


>gi|51245542|ref|YP_065426.1| ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54]
 gi|50876579|emb|CAG36419.1| probable ATP-dependent RNA helicase [Desulfotalea psychrophila
           LSv54]
          Length = 632

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 154/384 (40%), Positives = 233/384 (60%), Gaps = 12/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L   +V  ++  G+ +PTPIQ K IPL+L   D+ G AQTGTGKTA+F LP+L  
Sbjct: 57  FTDFNLKSDLVANLVKLGFSQPTPIQEKAIPLLLAGSDLIGQAQTGTGKTAAFGLPLLNN 116

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    L+L PTRELA QV D    Y  +    V ++ GG  ++AQ   L RG
Sbjct: 117 IDFSKKCVQ---ALVLAPTRELAQQVGDALATYSGDDGRNVLVVYGGSSYQAQVGGLRRG 173

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A V++ TPGR+LD   +G L ++ ++ LV+DEAD ML MGFI  I+ I S  P  RQT+L
Sbjct: 174 ARVVVGTPGRLLDLIRQGSLKLDQLKTLVLDEADEMLSMGFIDDIETILSQTPKDRQTML 233

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++  +  ++  +L +P+ I ++       +IE  +       S K A + ++ + +
Sbjct: 234 FSATLSSRVMSIANRYLHSPESISISPKQMIGSSIEQRYY--LINNSDKIAAITRVFEVE 291

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+++ +IF   +  V  L + L  +GF+   + G++ Q +R ++LS FK+G I+++VA+
Sbjct: 292 -TVESALIFARTRATVSELANELISRGFAAEGLSGDLSQEARTRVLSRFKKGQIKVLVAT 350

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI D+ HVFN+D+P   E Y+HRIGRTGRAGR G A +LV   D      IE+
Sbjct: 351 DVAARGLDIDDISHVFNYDLPEDPEVYVHRIGRTGRAGRSGTAISLVTLRDRWMHRRIEQ 410

Query: 363 LIEKKVDWLNGDLSSLNPPLEKID 386
              KK+  + G+L    P +E+I+
Sbjct: 411 YTGKKL--IKGEL----PTVEQIE 428


>gi|78186470|ref|YP_374513.1| DEAD/DEAH box helicase-like [Chlorobium luteolum DSM 273]
 gi|78166372|gb|ABB23470.1| ATP-dependent RNA helicase CsdA [Chlorobium luteolum DSM 273]
          Length = 590

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 146/372 (39%), Positives = 231/372 (62%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DL LS  ++ A+ + GY  PTPIQ +TIPL+L+  DV G AQTGTGKTA+F LP+L+
Sbjct: 11  NFTDLNLSEPIMRALKEVGYETPTPIQARTIPLMLEGRDVLGQAQTGTGKTAAFALPILS 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++     +  P+ L+L PTRELA QVA+ F KY +      V  + GG  +  Q + L+
Sbjct: 71  GID---LSLTDPQVLVLAPTRELAIQVAEAFHKYAEYLKGFHVLPIYGGQDYGGQLRMLK 127

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG L +++++ LV+DEAD ML MGFI  ++ I    P  RQ 
Sbjct: 128 RGVHVVVGTPGRVMDHMRRGSLNLDSLQCLVLDEADEMLRMGFIDDVEWILGETPKERQV 187

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++++++ +L +P  + +   ++T ETI   +       S K  +L ++L+
Sbjct: 188 ALFSATMPAPIRRIAQKYLNSPAEVTIEGKTTTVETIRQRYWIVGG--SHKLDILTRILE 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  +IF   K   + L   L+ +G++  A++G++ Q  R + +   K+G++ +++
Sbjct: 246 VE-PFEGMLIFVRTKTMTLELAEKLQARGYAAAALNGDMVQNQRERTVDQLKDGSLNIVI 304

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+DVP   E+Y+HRIGRTGRAGR G+A   VA  +   + AI
Sbjct: 305 ATDVAARGLDVERISHVINYDVPYDTESYVHRIGRTGRAGRSGEAILFVAPREKNMLYAI 364

Query: 361 EKLIEKKVDWLN 372
           EK   K+++ + 
Sbjct: 365 EKATRKRIELME 376


>gi|261251316|ref|ZP_05943890.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
 gi|260938189|gb|EEX94177.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
          Length = 396

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 151/362 (41%), Positives = 217/362 (59%), Gaps = 4/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  A+ + GY KPT IQ K IP++L   D+   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSQPITTAISELGYDKPTNIQNKAIPVILDGEDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G   R +  R LIL PTRELA QV    ++YGK+ NLT   + GG+  + Q + L
Sbjct: 61  EKLSQGETQRKKRIRALILAPTRELAIQVEQKVQEYGKHLNLTSLAMYGGVDEQPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +    +EILV+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IEGVDILVATPGRLLDMYAKRAVYFEEVEILVLDEADRMLDMGFIEDINKILDRLPTDIQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++++++ +++  + NP  I +    ++ + IE   +        K ALL  L+
Sbjct: 181 NLLFSATLSNKVRDLAKTAVHNPYEISIAANQASKKNIEQWLITV--DKDMKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++     +IF   K     L   LEK+G    A H    Q  R K+L +FK G I+ M
Sbjct: 239 K-ENEWDQALIFIETKHGAAKLASQLEKRGIEAEAFHSGRSQAIRSKLLEDFKAGKIKYM 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ + ARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 IATGVGARGIDIEGLSRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFKNLCM 357

Query: 360 IE 361
           IE
Sbjct: 358 IE 359


>gi|229523508|ref|ZP_04412913.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
 gi|229337089|gb|EEO02106.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
          Length = 396

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 155/372 (41%), Positives = 225/372 (60%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V  V   GY KPT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +G+ + R+ R LIL PTRELA QVA+  E+YGK+  L    + GG+  +AQ ++L 
Sbjct: 61  EKLRQGQRKKRI-RALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLI 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q 
Sbjct: 120 DGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQF 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT++ +++++++  +++P  I +    ++   I    +        K ALL  L+ 
Sbjct: 180 LLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV--DKDTKSALLSHLIN 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +V
Sbjct: 238 EQQ-WDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  I
Sbjct: 297 ATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMI 356

Query: 361 EK----LIEKKV 368
           E     LIE++V
Sbjct: 357 ESRLGHLIERRV 368


>gi|221308280|ref|ZP_03590127.1| hypothetical protein Bsubs1_02593 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312602|ref|ZP_03594407.1| hypothetical protein BsubsN3_02569 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317526|ref|ZP_03598820.1| hypothetical protein BsubsJ_02533 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321802|ref|ZP_03603096.1| hypothetical protein BsubsS_02604 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321314132|ref|YP_004206419.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
 gi|134039178|sp|P96614|CSHA_BACSU RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|291482867|dbj|BAI83942.1| hypothetical protein BSNT_00786 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320020406|gb|ADV95392.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis BSn5]
          Length = 494

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 150/369 (40%), Positives = 227/369 (61%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS  ++ A+   G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F +P++  
Sbjct: 5   FQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +      ++    +++ PTRELA QV++   K G++    V  + GG     Q + L++ 
Sbjct: 65  INPESPNIQ---AIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKN 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++++ TPGR+LDH NR  + +NN+  +V+DEAD ML+MGFI  I++I S VP   QTLL
Sbjct: 122 PNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +++++E F+  P+ ++V     T   I+  ++    Q  KK   L +LL  Q
Sbjct: 182 FSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLE--VQERKKFDTLTRLLDIQ 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM  L  FKEG I+++VA+
Sbjct: 240 -SPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVAT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFDVP   E+Y+HRIGRTGRAG+ G A T +   +   + AIE+
Sbjct: 299 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQ 358

Query: 363 LIEKKVDWL 371
             ++K+D +
Sbjct: 359 TTKRKMDRM 367


>gi|227528896|ref|ZP_03958945.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
           ATCC 49540]
 gi|227351170|gb|EEJ41461.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
           ATCC 49540]
          Length = 501

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 145/363 (39%), Positives = 228/363 (62%), Gaps = 6/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+  +GY + TPIQ +TIP+VL+  DV G AQTGTGKTA+F LP++
Sbjct: 1   MKFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    +I+ PTRELA Q  +   + GK+ ++ V ++ GG     Q + L+
Sbjct: 61  EHVDTDNPNIQ---AIIISPTRELAIQTQEELFRLGKDKHVRVQVVYGGADIRRQIRNLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGR+ DH NR  + +++I+ LV+DEAD ML+MGF+  I+ I    P  RQT
Sbjct: 118 QHPQILVGTPGRLRDHLNRHTVKLDHIKTLVLDEADEMLNMGFLDDIEAIIDQTPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++K+   F+ +P  + +     T + ++  +V   A+  +K  ++ +L+ 
Sbjct: 178 LLFSATMPPEIKKIGVKFMTDPTMVRIKAKELTTDLVDQYYVK--ARDYEKFDIMTRLID 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     I+F   K+ V  L   L  +G++   IHG++ Q  R KI+  FK G + ++V
Sbjct: 236 VQDPDLT-IVFGRTKRRVDELSRGLVARGYNAAGIHGDLSQDRRTKIMKKFKHGELDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P+  ++Y+HRIGRTGRAG HG + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLREI 354

Query: 361 EKL 363
           EKL
Sbjct: 355 EKL 357


>gi|307129391|ref|YP_003881407.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
 gi|306526920|gb|ADM96850.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
          Length = 631

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 145/377 (38%), Positives = 236/377 (62%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLS  ++ A+ + GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FASLGLSAPILNALSEMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +   +A ++ P+ L+L PTRELA QVA+   ++ K+   + V  L GG  ++ Q + L +
Sbjct: 68  I---KADLKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F+ +P+ + + +  +T   I   +   Y    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGM--RKNEALIRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +VD  N +L
Sbjct: 362 RTMKLTIPEVDLPNAEL 378


>gi|251791029|ref|YP_003005750.1| ATP-dependent RNA helicase DeaD [Dickeya zeae Ech1591]
 gi|247539650|gb|ACT08271.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
          Length = 624

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 146/377 (38%), Positives = 236/377 (62%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLS  ++ A+ + GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FASLGLSAPILNALSEMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +   +A ++ P+ L+L PTRELA QVA+   ++ K+   + V  L GG  ++ Q + L +
Sbjct: 68  I---KADLKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + +P   QT 
Sbjct: 125 GPQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F+ +P+ + + +  +T   I   +   Y    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGM--RKNEALIRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +VD  N +L
Sbjct: 362 RTMKLTIPEVDLPNAEL 378


>gi|227327833|ref|ZP_03831857.1| ATP-dependent RNA helicase DeaD [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 635

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 145/377 (38%), Positives = 237/377 (62%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLNTSILNALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   +  ++ P+ L+L PTRELA QVA+    + K+ + + V  L GG  ++ Q + L  
Sbjct: 68  L---KPELKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVALYGGQRYDVQLRALRG 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + +P   QT 
Sbjct: 125 GAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAQHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F+++P+ + + +  +T   I   +     Q  +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTV--QGMRKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++++
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|225024978|ref|ZP_03714170.1| hypothetical protein EIKCOROL_01867 [Eikenella corrodens ATCC
           23834]
 gi|224942208|gb|EEG23417.1| hypothetical protein EIKCOROL_01867 [Eikenella corrodens ATCC
           23834]
          Length = 431

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 147/370 (39%), Positives = 226/370 (61%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL     ++ A+  AGY++PTPIQ++ +P  +   D+   AQTG+GKTA+F+LP L
Sbjct: 3   IQFSDLLHDKNLLAALRSAGYIEPTPIQVQALPAAIDGRDIMASAQTGSGKTAAFLLPSL 62

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
             I  +     + PR L+L PTRELAAQV  N + Y +N   L    L+GG  F  Q K 
Sbjct: 63  QRITRRSDKSGKGPRILVLTPTRELAAQVEKNAKIYAQNMKWLRTVTLVGGSSFGFQIKA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++DH   G++  + +E+LV+DEADRMLDMGFI  I+ I +  P +R
Sbjct: 123 LAKPIDLVVATPGRLMDHMRSGRIDFDRLEVLVLDEADRMLDMGFIDDIETIVAATPESR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    +NP+ IE+    +  +  E  F      +  +  LL  +
Sbjct: 183 QTLLFSATWDGAVGKLARRLTKNPEVIEIEREDNQGKIDEQLFYCDDKNHKNR--LLDHI 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+  + +   IIF + K     L   L ++GF+   +HG++ Q  R + L + ++G I++
Sbjct: 241 LRDAN-IDQCIIFTSTKAMSEQLADELYEKGFAANCLHGDMPQNWRNRTLMDLRKGRIKV 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGRHG A T     +   + 
Sbjct: 300 LVATDVAARGIDVPSITHVINYDLPKQAEDYVHRIGRTGRAGRHGLALTFAEVNEYVAVH 359

Query: 359 AIEKLIEKKV 368
            IEK + +K+
Sbjct: 360 KIEKYLGRKL 369


>gi|153955940|ref|YP_001396705.1| RNA helicase [Clostridium kluyveri DSM 555]
 gi|219856282|ref|YP_002473404.1| hypothetical protein CKR_2939 [Clostridium kluyveri NBRC 12016]
 gi|146348798|gb|EDK35334.1| Predicted RNA helicase [Clostridium kluyveri DSM 555]
 gi|219570006|dbj|BAH07990.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 524

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 151/371 (40%), Positives = 227/371 (61%), Gaps = 11/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL L PKV  A+ + G+ +P+ IQ ++IP++L+ +D+ G AQTGTGKT +F  PML
Sbjct: 4   ISFNDLNLHPKVFEAIDNMGFEEPSQIQAESIPVILEGNDIIGQAQTGTGKTLAFGAPML 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   K   + +    LIL PTRELA QV D   +  K   + +  + GG P E Q K L+
Sbjct: 64  S---KITPKNKHISALILTPTRELAIQVNDELSRIAKFMKILLLPIYGGQPIERQIKSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++++ TPGRILDH +R  L ++NIE L IDEAD MLDMGFI  I+ I       RQT
Sbjct: 121 RGINIVVGTPGRILDHLHRKTLDLSNIEFLTIDEADEMLDMGFIEDIEEIIKASNPNRQT 180

Query: 181 LLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQ 237
           LLFSATM D++++++  ++  N K I +   + T E  +  +  +    ++   C +L  
Sbjct: 181 LLFSATMPDQVKRLASKYMSSNTKYITIAKNTLTVEKTKQYYYEIKHKDRFESLCRIL-- 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                D   + IIFC  K+ V  L  S++ +G++V  +HG++ Q  R+  L  FKEG++ 
Sbjct: 239 ---DVDEPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLD 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARG+D+ +V HV N+D+P   E+Y+HRIGRTGRA + G A++LV   +   +
Sbjct: 296 FLVATDVAARGIDVENVSHVINYDLPQDTESYVHRIGRTGRANKEGIAYSLVTPREYILL 355

Query: 358 DAIEKLIEKKV 368
             IEK  + K+
Sbjct: 356 KQIEKFTKSKI 366


>gi|92113266|ref|YP_573194.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
           DSM 3043]
 gi|91796356|gb|ABE58495.1| ATP-dependent RNA helicase CsdA [Chromohalobacter salexigens DSM
           3043]
          Length = 568

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 149/367 (40%), Positives = 221/367 (60%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L L   ++  +   GY  P+ IQ KTIP +L+  DV G AQTGTGKTA+F LP+L+ 
Sbjct: 11  FAELSLPSTILSTLETLGYETPSLIQAKTIPALLEGRDVLGQAQTGTGKTAAFALPLLSR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+  R   R P+ L+L PTRELA QVA +F +YG+    L V  L GG  +  Q   L R
Sbjct: 71  LDLQR---REPQVLVLAPTRELAQQVAASFVQYGRGVKGLEVLSLCGGQEYREQLSGLRR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH +RG L ++ +  LV+DEAD ML MGFI  ++ + S  P   Q +
Sbjct: 128 GAQVIVGTPGRVIDHLDRGSLKLDGLNALVLDEADEMLRMGFIDDVKRVVSDTPKDAQRV 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT+ DE+ ++  ++L +P RI + T + TAE IE   V    +   K   L +LL+ 
Sbjct: 188 FFSATLPDEISRIVNHYLVDPLRIAIETKTKTAEGIEQRLV--RIEGGAKLEALSRLLEV 245

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   I+F   +     L   L  +G +  A+ G++DQ  R + +   K G + +++A
Sbjct: 246 E-PVDAAIVFVRTRAACTTLVEQLLLRGVNAAALSGDLDQSLRERTVERLKRGKVDVLIA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN+D+P  AE Y HRIGRTGRAGR G A T     + + +  +E
Sbjct: 305 TDVAARGLDVPRITHVFNYDLPQDAEAYTHRIGRTGRAGRTGVAITFAGGREQRRVRDME 364

Query: 362 KLIEKKV 368
           ++  +++
Sbjct: 365 RVTGQQM 371


>gi|300312721|ref|YP_003776813.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300075506|gb|ADJ64905.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 510

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 150/393 (38%), Positives = 232/393 (59%), Gaps = 27/393 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ +AGY  PTP+Q K IP  +   D+   +QTG+GKTA+F+LP L
Sbjct: 1   MTFEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSL 60

Query: 61  TIL------------------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYG 96
             L                        E+ R +   P+ L+L PTRELA QV    +KYG
Sbjct: 61  HQLADLPPAPQAARTPNQERQASRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYG 120

Query: 97  KNYN-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEA 155
                + V  ++GG+P+  Q + L R  ++L+ TPGR++DH   GK+  + ++ILV+DEA
Sbjct: 121 AYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA 180

Query: 156 DRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
           DRMLDMGFI  I+ I +  P TRQT+LFSAT+   +  +++    NP  I++ + S+  E
Sbjct: 181 DRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRHE 240

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
            I    V      S K  LL  LL+   ++   +IF   K++   +   L   GF+  A+
Sbjct: 241 NIMQR-VHFVDDLSHKNRLLDHLLRDT-SIDQAVIFTATKRDADTIADRLNIAGFAAAAL 298

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG++ Q +R + L++ + G ++++VA+D+AARG+D+P + HVFN+D+P  AE+Y+HRIGR
Sbjct: 299 HGDMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGR 358

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           TGRAGR+G A +LV   +   +  IE+  ++ +
Sbjct: 359 TGRAGRNGVAISLVNHAEGMQVKRIERFTKQTI 391


>gi|223932903|ref|ZP_03624899.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
 gi|330833198|ref|YP_004402023.1| DEAD/DEAH box helicase domain-containing protein [Streptococcus
           suis ST3]
 gi|223898484|gb|EEF64849.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
 gi|329307421|gb|AEB81837.1| DEAD/DEAH box helicase domain protein [Streptococcus suis ST3]
          Length = 526

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 147/371 (39%), Positives = 229/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  ++ AV  AG+  P+PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTDLQLSEDILLAVEKAGFETPSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    LI+ PTRELA Q  +   K+G+   + V  + GG   E Q K L 
Sbjct: 61  NKIDTNNQAIQ---ALIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L ++ +E L++DEAD ML+MGF+  I+ I   VP +RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPESRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + ++++   F++ P+ +++     T   ++  ++    +  +K   + +L+ 
Sbjct: 178 LLFSATMPEPIKRIGVKFMKEPEHVKIAAKELTNVNVDQYYL--RVKEHEKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLAII 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 EDLTKKRMKGL 365


>gi|327396268|dbj|BAK13690.1| cold-shock DEAD box protein A DeaD [Pantoea ananatis AJ13355]
          Length = 630

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 145/377 (38%), Positives = 239/377 (63%), Gaps = 11/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL+ +++ ++   GYVKP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FAELGLNAELLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     V+ P+ L+L PTRELA QVA+   ++ K+   L V  L GG  ++ Q + L +
Sbjct: 68  IDP---TVKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++ F+++P+ + + +  +T   I   +   +  Y +K   L + L++
Sbjct: 185 LFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSY---WTAYGRKTDALVRFLEA 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 242 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 301 TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 360

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 361 RTMKLTIPEVELPNAEL 377


>gi|323495782|ref|ZP_08100852.1| DNA and RNA helicase [Vibrio sinaloensis DSM 21326]
 gi|323319249|gb|EGA72190.1| DNA and RNA helicase [Vibrio sinaloensis DSM 21326]
          Length = 399

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 154/372 (41%), Positives = 222/372 (59%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  A+   GY KPT IQ K IP ++   D+   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSKPITDAIQSLGYAKPTTIQNKAIPAIMHGEDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L KG   R +  R LIL PTRELA Q+    ++YG+N +LT   + GG+  + Q + L
Sbjct: 61  EKLAKGETQRKKRIRALILAPTRELAEQIDQKVKQYGQNLSLTSLAMYGGVDEKPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+LI TPGR+LD + +  +    +EILV+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDILIATPGRLLDLYGKRAVYFEEVEILVMDEADRMLDMGFIDDINKILDRLPTDIQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++++++ +++  + +P  I +    ++ + IE   +       KK ALL  L+
Sbjct: 181 HLLFSATLSNKVRDLAKTAVHDPFEISIAANQASKKNIEQWLITV--DKDKKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D     +IF   K     L   LEK+G +  A H    Q  R ++L++FK G IQ M
Sbjct: 239 KEND-WDQALIFIETKHGAAKLASQLEKRGITAEAFHSGRSQAIRKQLLADFKAGKIQYM 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ + ARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 IATGVGARGIDIEGLSRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFKNLCM 357

Query: 360 IEK----LIEKK 367
           IE     LIE++
Sbjct: 358 IESRLGHLIERR 369


>gi|330508037|ref|YP_004384465.1| ATP-dependent RNA helicase [Methanosaeta concilii GP-6]
 gi|328928845|gb|AEB68647.1| ATP-dependent RNA helicase, putative [Methanosaeta concilii GP-6]
          Length = 427

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 151/371 (40%), Positives = 225/371 (60%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   ++ A+   GY  PTPIQ+  IP +L+  D+ GIAQTGTGKTA+FVLP+L
Sbjct: 1   MSFGNLNIIDPLLRAIALEGYTTPTPIQMLAIPPLLEGKDLLGIAQTGTGKTAAFVLPIL 60

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +  E+  +R   PR L+L PTRELAAQ+  +F  YGK       ++ GG+    Q   
Sbjct: 61  QRMSAERRASRPGSPRVLVLAPTRELAAQIGQSFATYGKFLRFRQLVIFGGVRQGPQVNM 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+LD  N+G + +  +E  V+DE DRMLDMGFI  ++ I S +P   
Sbjct: 121 LSRGVDILVATPGRLLDLMNQGYIELKGVEFFVLDEIDRMLDMGFIRDVKRIVSALPEKH 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            +L FSAT+T E  +++++ L +P  ++ +  + T ++I+      +   + K +LL  L
Sbjct: 181 SSLFFSATLTRETGELAQSLLNDPVHVQASPSACTLDSIDQQVF--FVDQNSKNSLLLDL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +D MK  ++F   K     +   L K      AIHGN  Q  R K +  F+ G I++
Sbjct: 239 LLKED-MKRVLVFARTKHRADKVAQMLSKNRIQSDAIHGNKSQNQRTKTMERFRSGRIRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI D+ HV N+D+PN  E+Y+HRIGRTGRAG  G AF+  + E+   + 
Sbjct: 298 LVATDIAARGIDIDDITHVVNYDLPNEPESYVHRIGRTGRAGASGNAFSFCSAEERSFLK 357

Query: 359 AIEKLIEKKVD 369
            IE+L  +K++
Sbjct: 358 DIERLTREKIE 368


>gi|291616016|ref|YP_003518758.1| DeaD [Pantoea ananatis LMG 20103]
 gi|291151046|gb|ADD75630.1| DeaD [Pantoea ananatis LMG 20103]
          Length = 633

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 145/377 (38%), Positives = 239/377 (63%), Gaps = 11/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL+ +++ ++   GYVKP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 11  FAELGLNAELLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHN 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     V+ P+ L+L PTRELA QVA+   ++ K+   L V  L GG  ++ Q + L +
Sbjct: 71  IDPT---VKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRALRQ 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 128 GPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++ F+++P+ + + +  +T   I   +   +  Y +K   L + L++
Sbjct: 188 LFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSY---WTAYGRKTDALVRFLEA 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 245 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 304 TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 363

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 364 RTMKLTIPEVELPNAEL 380


>gi|269137769|ref|YP_003294469.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda EIB202]
 gi|267983429|gb|ACY83258.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda EIB202]
          Length = 634

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 145/379 (38%), Positives = 233/379 (61%), Gaps = 10/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  ++ A+ D GY KP+PIQ   IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLAAPIIEALNDLGYEKPSPIQAACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           ++     ++ P+ L+L PTRELA QVA+    + K+ + + V  L GG  ++ Q + L +
Sbjct: 68  IDPS---LKAPQVLVLAPTRELAVQVAEAMADFSKHMHGINVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L + ++  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLSLTSLRGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F+  P+ + + +  +T   I   +   Y    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVYGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G+S  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDLSS 377
              KL   +V+  N +L S
Sbjct: 362 RTMKLTIPEVELPNAELLS 380


>gi|254495452|ref|ZP_05108376.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
 gi|85819807|gb|EAQ40964.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
          Length = 411

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 157/389 (40%), Positives = 240/389 (61%), Gaps = 16/389 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+D+ L+  +  A+ +A + KPT +Q KTIPLVL + +V   AQTGTGKTA+F LP++
Sbjct: 1   MQFSDIPLNKSIQKAIAEARFHKPTLVQEKTIPLVLDKKNVIVAAQTGTGKTAAFALPII 60

Query: 61  TIL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L      EKG  +++    L++ PTRELA Q+ +NF+ Y K  NL    + GG+  E 
Sbjct: 61  NLLFDKQDAEKGEKKIK---ALVITPTRELAIQILENFKSYSKYSNLRSTAVFGGVSLEP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L +G D+L+ TPGR++D   +G + ++ +EI V+DEAD MLDMGFI  I+ I  L 
Sbjct: 118 QKEILAKGVDILVATPGRLIDLQMQGNIDLSQLEIFVLDEADLMLDMGFINDIKKIEKLC 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  +QTLLFSAT+ +++ ++S++ ++N  ++++N   +TA+ I       Y     K  L
Sbjct: 178 PRKKQTLLFSATIPEKIDELSKSIVKNATKVDINPEETTAKNIGQLLY--YLPKKNKTDL 235

Query: 235 LQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
              LL++     NG  IIF   K  V  L  +L K G++V +IHG+  Q  R K + +FK
Sbjct: 236 CLHLLRN---TINGKIIIFRRTKFAVDKLEQTLIKNGYNVASIHGDKTQGVRNKAIEDFK 292

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                +++A+D+AARG+DI +V  + NFD+PN  E Y+HRIGRTGRAG+ G AF+  + +
Sbjct: 293 SKKASILIATDVAARGIDITNVDAIINFDIPNVPEIYVHRIGRTGRAGKSGIAFSFCSPD 352

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           +  +I +IE LIEK +  +      +N P
Sbjct: 353 ENNYIASIENLIEKSIKVIEDHPYPINKP 381


>gi|227822942|ref|YP_002826914.1| dead-box ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
 gi|227341943|gb|ACP26161.1| dead-box ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
          Length = 520

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 154/377 (40%), Positives = 230/377 (61%), Gaps = 4/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +LGLS +++  +   G+ KPTPIQ + IPLVL+ HD+ G+AQTGTGKTA+F LPM+  
Sbjct: 14  FKELGLSQQILATLSANGFEKPTPIQAQAIPLVLKGHDLIGLAQTGTGKTAAFGLPMIEK 73

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + +  R   R  R L+L PTREL  Q+A N + + K   L V +++GG+    Q ++L 
Sbjct: 74  LVADGKRPDPRNIRALVLAPTRELVNQIATNLKLFVKKSPLKVGVVVGGVSINKQTEQLA 133

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+LD   R  + +     LV+DEAD+MLD+GFI  ++ I+ LVP  RQT
Sbjct: 134 RGVDILVATPGRLLDLVARKAVTLTQGRYLVLDEADQMLDLGFIHDLRKISKLVPKNRQT 193

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  ++ +++  +L +P ++EV  P   A+ +E        +  K   L Q L  
Sbjct: 194 LLFSATMPKQIAELAGEYLTDPVKVEVTPPGKAADKVEQYVHFVPGKDLKTTILKQSLTN 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D +   ++F   K     L   L+  GF   +IHGN  Q  R + L  F++G I+++V
Sbjct: 254 NPDGLS--LVFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKGFRDGEIRVLV 311

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DIP V HV+N+D+P   + Y+HRIGRT R GR G A    A ++I+ +  I
Sbjct: 312 ATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDI 371

Query: 361 EKLIEKKVDWLNGDLSS 377
           EKL+  ++   +G+  S
Sbjct: 372 EKLMGIQIAVASGEAPS 388


>gi|330448509|ref|ZP_08312157.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492700|dbj|GAA06654.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 432

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 160/412 (38%), Positives = 243/412 (58%), Gaps = 13/412 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G S  +V A+ + GY K TP+Q K IP   +  D+  +AQTGTGKTA+F LP++
Sbjct: 1   MSFLSQGFSQDLVKALTEIGYEKLTPVQAKAIPQARRGADILALAQTGTGKTAAFSLPII 60

Query: 61  TIL---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L    K ++R  + R LIL PTRELA Q+A+N   Y K  ++T   + GG    +Q K
Sbjct: 61  QKLIDTPKSKSRFNV-RALILAPTRELAEQIANNISDYTKYTSITCTAVFGGKKMSSQEK 119

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +LE+G D+L+ TPGR+++H     + + N+E L+ DEADRMLDMGFI  I+ I   +   
Sbjct: 120 RLEQGVDILVATPGRLIEHMELNNVSLANLEFLIFDEADRMLDMGFIGAIRVILDDIRTK 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            QT+LFSAT + ++  ++ + L  P+RI V   +STA+T+ H  V       +K  LL +
Sbjct: 180 PQTMLFSATSSAQMNALAADILHKPQRITVTPENSTADTVSH--VVYPVDEDRKTELLSE 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+  ++  +  ++F N K+    L   L+  G      HG+  Q +R + L  FKEG  +
Sbjct: 238 LIGKKN-WRQVLVFVNYKETANQLVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKAR 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MVA+++AARGLDI ++ +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+   +
Sbjct: 297 VMVATEVAARGLDIQNLPYVVNYDMPFLAEDYVHRIGRTGRAGQKGNAISFVSREEELTL 356

Query: 358 DAIEKLIEK---KVDWLNGDLSSLNPPLEKIDIA---QHNHARKNNPIPQKS 403
             IE+LI +   +V  +  +  S +  LE++           RKNNP   +S
Sbjct: 357 VQIERLIGQRIHRVQLIGYEPKSRDALLERMHSKPAFSQREGRKNNPTQDQS 408


>gi|302867898|ref|YP_003836535.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302570757|gb|ADL46959.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca
           ATCC 27029]
          Length = 585

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 148/367 (40%), Positives = 217/367 (59%), Gaps = 3/367 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL  +++ A+   GY +PTPIQ + IP +L   D+ G A TGTGKTA+F LP+L  
Sbjct: 22  FADLGLRTELLGALSALGYEEPTPIQREAIPPLLAGQDLLGQAATGTGKTAAFALPLLQR 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +  GRA    P +L+L PTRELA QV++ F +YGK+    V  + GG P   Q + L+ G
Sbjct: 82  MPVGRADGD-PVSLVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALDHG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR LDH  RG L +  +  +V+DEAD MLDMGF   I+ I    P  RQT+L
Sbjct: 141 VDVVVATPGRALDHIARGTLRLGALSTVVLDEADEMLDMGFAEDIEAILEHAPAGRQTVL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQS 241
           FSATM   +  ++   L +P RI +      A        + Y    + K A L ++L  
Sbjct: 201 FSATMPARIDGLARQHLTDPVRIRIERERPVAGEAPRVRQSAYIVARAHKPAALGRVLDV 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + +    I+FC  ++ V  L  ++  +G+   A+HG + Q  R +++   + GT  L+VA
Sbjct: 261 E-SPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVA 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+DVP+  E+Y+HRIGR GRAGR G A TL    + + +  IE
Sbjct: 320 TDVAARGLDVEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIE 379

Query: 362 KLIEKKV 368
           ++  +++
Sbjct: 380 RVTGQRI 386


>gi|304557826|gb|ADM40490.1| Cold-shock DEAD-box protein A [Edwardsiella tarda FL6-60]
          Length = 621

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 145/379 (38%), Positives = 233/379 (61%), Gaps = 10/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  ++ A+ D GY KP+PIQ   IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLAAPIIEALNDLGYEKPSPIQAACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           ++     ++ P+ L+L PTRELA QVA+    + K+ + + V  L GG  ++ Q + L +
Sbjct: 68  IDPS---LKAPQVLVLAPTRELAVQVAEAMADFSKHMHGINVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L + ++  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLSLTSLRGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F+  P+ + + +  +T   I   +   Y    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVYGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G+S  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDLSS 377
              KL   +V+  N +L S
Sbjct: 362 RTMKLTIPEVELPNAELLS 380


>gi|257056836|ref|YP_003134668.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
 gi|256586708|gb|ACU97841.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
          Length = 570

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 154/378 (40%), Positives = 224/378 (59%), Gaps = 16/378 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL P+++ A+ + GY +PTPIQ   IP +L   DV G A TGTGKTA+F LP+L  
Sbjct: 18  FSELGLRPELLQALAELGYEEPTPIQRAAIPPLLDGCDVVGQAATGTGKTAAFALPVLHR 77

Query: 63  LEKG-------RA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           +  G       RA R   P  ++L PTRELAAQV +   +YG+   + V  + GG     
Sbjct: 78  IRDGERGERGARAQRGAAPSAVVLVPTRELAAQVCEAMRRYGRRLGVRVLPVYGGQSMSR 137

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LE G DV++ TPGR LDH +RG L ++ + ++V+DEAD MLDMGF   I  I    
Sbjct: 138 QLRALEEGVDVVVATPGRALDHLSRGSLDLSALRMVVLDEADEMLDMGFAEDIDTILERT 197

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS----TAETIEHCFVATYAQYSK 230
           P  RQT+LFSATM   +  +   +L++P+RIE++   S     A   +  +V        
Sbjct: 198 PDDRQTMLFSATMPPRIAGLVRRYLRDPRRIELSRAESLDGDAASITQTAYVVPRGH--- 254

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K A L ++L  + T +  ++FC  ++ V  L  ++  +G+   A+HG +DQ  R +++  
Sbjct: 255 KPAALGRVLDIE-TPEATVVFCRTREEVDRLTETMNGRGYRAEALHGGMDQHQRNRVVGR 313

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
            + GT  L+VA+D+AARGLDI  + HV N+DVP+  E Y+HRIGR GRAGR G A TL  
Sbjct: 314 LRTGTADLVVATDVAARGLDIDQLTHVVNYDVPSAPEVYVHRIGRVGRAGRQGSAITLAE 373

Query: 351 KEDIKHIDAIEKLIEKKV 368
             + + I AIE++  + V
Sbjct: 374 PGEHRMIKAIERVTGQPV 391


>gi|256844404|ref|ZP_05549890.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           125-2-CHN]
 gi|256613482|gb|EEU18685.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           125-2-CHN]
          Length = 494

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 154/396 (38%), Positives = 244/396 (61%), Gaps = 16/396 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+  ++ A+  +G+ + TPIQ +TIPL LQ  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++K    ++    +I+EPTRELA Q  +   + G++ +  V ++ GG     Q + L+
Sbjct: 61  QMIDKKEKAIQ---AVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLK 117

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LDH  R  + ++ ++ +V+DEAD MLDMGFI  I++I       +Q
Sbjct: 118 HHVPSILVGTPGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + ++ E F+ +P+ + +     TA+ IE  FV   A+ S+K  ++ +L+
Sbjct: 178 TLLFSATMPKPILRIGEKFMDHPEIVRIKAKELTADLIEQYFV--RAKESEKFDIMCRLI 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      ++F   K+ V  L   L+ +G++   IHG++ Q  RM +L  F+EG + ++
Sbjct: 236 DVQGP-DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           IE+L +KK       +S L PP +  D A H   ++
Sbjct: 355 IEQLTKKK-------MSPLRPPTD--DQALHGQLKQ 381


>gi|229529522|ref|ZP_04418912.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|229333296|gb|EEN98782.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|327484073|gb|AEA78480.1| ATP-dependent RNA helicase VC1407 [Vibrio cholerae LMA3894-4]
          Length = 397

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 156/373 (41%), Positives = 224/373 (60%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V  V   GY KPT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YGK+  L    + GG+  +AQ ++L
Sbjct: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D F +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDVLVATPGRLMDLFGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  +++P  I +    ++   I    +        K ALL  L+
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV--DKDTKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 239 NEQQ-WDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357

Query: 360 IEK----LIEKKV 368
           IE     LIE++V
Sbjct: 358 IESRLGHLIERRV 370


>gi|302036818|ref|YP_003797140.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
 gi|190343232|gb|ACE75620.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
 gi|300604882|emb|CBK41215.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
          Length = 431

 Score =  286 bits (732), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 154/381 (40%), Positives = 227/381 (59%), Gaps = 14/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+SP ++  +  AG+ +PT IQ + IP  L   DV G AQTGTGKTA+FV+PML  
Sbjct: 9   FDSLGVSPTLLRNLTKAGFAEPTAIQAQAIPHALAGRDVLGCAQTGTGKTAAFVIPMLER 68

Query: 63  LE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L    KG+     PR LIL PTRELA Q+    +  G++  L    ++GG   +AQ + L
Sbjct: 69  LSGTPKGQ-----PRALILAPTRELAIQIQATIDTLGRDLQLFATTVVGGADMQAQVRGL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR+LDH   G + +  + ILV+DEADRMLDMGF   I  I   +P  RQ
Sbjct: 124 RQRPDIIVATPGRLLDHMWNGTISLLAMSILVLDEADRMLDMGFAQQINQILDAMPEERQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM ++L ++++  +++P R+ V   ++TA+ +       +  + +K  LL  LL
Sbjct: 184 TLLFSATMPNDLARLAQASVKDPVRVMVTKSATTADGVTQAV--HHTTHDRKNGLLMSLL 241

Query: 240 QSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           QS+ DT+   ++F   K     L + L+  G  V  +HG      R   L  F+ GT ++
Sbjct: 242 QSESDTV---LVFARTKHRADRLGNLLDSAGHRVAVLHGGRTLPQRRAALEGFRRGTYRV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ ++ HV N+DVPN  E+Y+HRIGRT R    G+A T V  ED + + 
Sbjct: 299 LVATDIAARGIDVANIAHVINYDVPNCPEDYVHRIGRTARMRTTGRATTFVTSEDQEQLR 358

Query: 359 AIEKLIEKKVDWLNGDLSSLN 379
           AIE+L+ + V    G   S++
Sbjct: 359 AIERLLGQAVPRAEGSPVSMS 379


>gi|289663283|ref|ZP_06484864.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 640

 Score =  286 bits (732), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 147/373 (39%), Positives = 228/373 (61%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV + GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 11  FADLGLSGAVMKAVTNVGYESPSPIQAATIPALLSGRDVLGQAQTGTGKTAAFALPVLSN 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
            +  + +   P+ L+L PTRELA QVA+ F+KY +      V  + GG P+  Q   L+R
Sbjct: 71  ADLNQLK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P  + +   ++T+  I   +   +     K   L ++L+ 
Sbjct: 188 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRY--WWVSGLHKLDALTRILEV 245

Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   IIF   K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++
Sbjct: 246 EPFDGM---IIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDIL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  V HV N+D+P   E+Y+HRIGRTGRAGR+G A   V   +   + +
Sbjct: 303 VATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRS 362

Query: 360 IEKLIEKKVDWLN 372
           IE+   + ++ + 
Sbjct: 363 IERATRQPIEEMQ 375


>gi|225420023|ref|ZP_03762326.1| hypothetical protein CLOSTASPAR_06366 [Clostridium asparagiforme
           DSM 15981]
 gi|225041279|gb|EEG51525.1| hypothetical protein CLOSTASPAR_06366 [Clostridium asparagiforme
           DSM 15981]
          Length = 552

 Score =  286 bits (732), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 149/371 (40%), Positives = 231/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL + P+++ A+ +  Y  PTPIQ + IP+VL   D+ G AQTGTGKTA+F +P L
Sbjct: 1   MQFKDLNIMPEILRALKNENYKIPTPIQEEAIPVVLSGRDLLGCAQTGTGKTAAFAIPTL 60

Query: 61  TIL---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L   E  R   R  + L++ PTRELA Q+ D+F  YG+  +L   ++ GG+  + Q +
Sbjct: 61  QMLSGEETPRWEKRTIKALVVTPTRELAIQIYDSFNTYGQFTDLKSCVVYGGVSQKPQEE 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+RG D+L+ TPGR+LD  ++  + +  I+ILV+DEADRMLDMGFI  ++ I +  P  
Sbjct: 121 NLKRGVDILVATPGRLLDLMDQKIVNIEKIKILVLDEADRMLDMGFIHDVKKIIARTPAE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTL FSATM  ++ K++   L+NP++IE+   ++T E IE      +     K  LL  
Sbjct: 181 KQTLFFSATMPPDIAKLAAKILKNPEKIEITPAATTVEAIEQYLY--FVDKGNKKDLLLH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+++D + + ++F   K     +   L K      AIHG+  Q +R + L++FK+  ++
Sbjct: 239 ILKTKD-LDSTLVFTRTKHGADRVVRQLSKSNVVAQAIHGDKSQGARQRALNDFKDKKLR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A +    ++   +
Sbjct: 298 VLVATDIAARGIDIDELACVVNYDLPDVPETYVHRIGRTGRAGLEGIAISFCDFDEKAQL 357

Query: 358 DAIEKLIEKKV 368
             IEKLI KK+
Sbjct: 358 ADIEKLIGKKL 368


>gi|146313234|ref|YP_001178308.1| ATP-dependent RNA helicase DeaD [Enterobacter sp. 638]
 gi|145320110|gb|ABP62257.1| ATP-dependent RNA helicase CsdA [Enterobacter sp. 638]
          Length = 655

 Score =  286 bits (732), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 144/377 (38%), Positives = 236/377 (62%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     +R P+ L+L PTRELA QVA+   ++ K+   + V  L GG  ++ Q + L +
Sbjct: 68  ID---PELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ ++ LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F+++P+ + + +  +T   I   F + +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQTFWSVHGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQSLREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
            I KL   + D  N +L
Sbjct: 362 RIMKLTIPEADLPNAEL 378


>gi|15602977|ref|NP_246049.1| DeaD [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721456|gb|AAK03196.1| DeaD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 610

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 152/372 (40%), Positives = 234/372 (62%), Gaps = 13/372 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL   ++ AV D G+  P+PIQ   IP +L  HDV G+AQTG+GKTA+F LP+L
Sbjct: 6   MTFNDLGLPEFLLNAVSDLGFETPSPIQQSCIPNLLNGHDVLGMAQTGSGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117
             ++  +   + P+ L++ PTRELA QVAD   +F KY KN N+    L GG  ++ Q +
Sbjct: 66  AQIDLDK---KYPQMLVMAPTRELAIQVADACEHFCKYAKNTNIVT--LYGGQRYDIQLR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +GA V++ TPGRILDH  RG L ++N+  +V+DEAD ML MGFI  ++ + + +P  
Sbjct: 121 ALRQGAQVVVGTPGRILDHIRRGTLDLSNLRFMVLDEADEMLRMGFIDDVETVMAELPEQ 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
            QT LFSATM D ++++++ F+++PK I++ +  +T   I + C+   Y    +K   L 
Sbjct: 181 HQTALFSATMPDPIRRITKRFMKDPKEIKIKSTQTTNPDITQSCW---YVHGFRKNDALL 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + L+ +      IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++
Sbjct: 238 RFLEVE-KFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSL 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + 
Sbjct: 297 DILVATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRTGRALLFVEPRERRL 356

Query: 357 IDAIEKLIEKKV 368
           +  IE+L +K +
Sbjct: 357 LRNIEQLTKKPI 368


>gi|145219994|ref|YP_001130703.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206158|gb|ABP37201.1| ATP-dependent RNA helicase CsdA [Chlorobium phaeovibrioides DSM
           265]
          Length = 598

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 144/373 (38%), Positives = 232/373 (62%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L+  V+ A+ D GY  PTPIQ +TIPL+++  DV G AQTGTGKTA+F LP+L+ 
Sbjct: 12  FTDLNLAEPVLRALADVGYETPTPIQARTIPLLIEGRDVLGQAQTGTGKTAAFALPILSN 71

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++        P+ L+L PTRELA QVA+ F KY ++     V  + GG  + +Q + L+R
Sbjct: 72  IDFSATE---PQVLVLAPTRELAIQVAEAFHKYAEHLKGFHVLPIYGGQEYGSQLRMLKR 128

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  +G L +++++ LV+DEAD ML MGFI  ++ I    P  RQ  
Sbjct: 129 GVHVVVGTPGRVMDHMRKGSLNLHSLKCLVLDEADEMLRMGFIDDVEWILEQTPSDRQVA 188

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L +P  + +   ++T +TI   +       S K  +L ++L+ 
Sbjct: 189 LFSATMPAPIRRIAQKYLNDPAEVTIQAKTTTVDTIRQRYWIVGG--SHKIDILTRILEV 246

Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   IIF   K   + +   L+ +G+S  A++G++ Q+ R + +   K G + ++
Sbjct: 247 EPFDGM---IIFVRTKTMTLEIAEKLQARGYSAAALNGDMVQQQRERTIDQLKSGALNIV 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G+A   V+  +   + +
Sbjct: 304 IATDVAARGLDVERISHVINYDIPSDTESYVHRIGRTGRAGRSGEAILFVSPRERNMLSS 363

Query: 360 IEKLIEKKVDWLN 372
           IE+   KK++ + 
Sbjct: 364 IERATRKKIELME 376


>gi|28897677|ref|NP_797282.1| RhlE protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|260364553|ref|ZP_05777162.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260876480|ref|ZP_05888835.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260895848|ref|ZP_05904344.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|28805890|dbj|BAC59166.1| RhlE [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086771|gb|EFO36466.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308092804|gb|EFO42499.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308115381|gb|EFO52921.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|328473340|gb|EGF44188.1| RhlE protein [Vibrio parahaemolyticus 10329]
          Length = 411

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 152/362 (41%), Positives = 221/362 (61%), Gaps = 4/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV   GY KPT IQ K IP+VL+  ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSAPITDAVTALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G   R +  R +IL PTRELA QV  + E YGKN  L    + GG+ +  Q + L
Sbjct: 61  EKLSQGETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVEYAPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR++D + +  +  + +E+LV+DEAD+MLDMGFI  I  I   +P   Q
Sbjct: 121 IEGVDIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIIDCMPEDVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT+++ ++ +++N + +P+ I +   S++   I+     T      K +LL  +L
Sbjct: 181 SLLFSATLSNPVRDLAKNAIVDPEEITIAKHSASKSNIKQWI--TTVDKDMKSSLLSHML 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     +IF   K     L   LEK+G    A H   +QR R +++  FK G IQ +
Sbjct: 239 NEND-WSQVLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI ++  V N+D+P  A+ Y+HRIGRTGRAG  G+A +LV+K+D K++  
Sbjct: 298 VATGVAARGIDIDNLPVVINYDLPFPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCM 357

Query: 360 IE 361
           IE
Sbjct: 358 IE 359


>gi|238918430|ref|YP_002931944.1| ATP-dependent RNA helicase DeaD [Edwardsiella ictaluri 93-146]
 gi|238867999|gb|ACR67710.1| cold-shock deAd box protein a [Edwardsiella ictaluri 93-146]
          Length = 634

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 145/379 (38%), Positives = 233/379 (61%), Gaps = 10/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  ++ A+ D GY KP+PIQ   IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLAAPIIEALNDLGYEKPSPIQAACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           ++     ++ P+ L+L PTRELA QVA+    + K+ + + V  L GG  ++ Q + L +
Sbjct: 68  IDPS---LKAPQVLVLAPTRELAVQVAEAMADFSKHMHGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L + ++  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLSLTSLRGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F+  P+ + + +  +T   I   +   Y    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVYGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G+S  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDLSS 377
              KL   +V+  N +L S
Sbjct: 362 RTMKLTIPEVELPNAELLS 380


>gi|302874235|ref|YP_003842868.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307689501|ref|ZP_07631947.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302577092|gb|ADL51104.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
           743B]
          Length = 536

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 147/369 (39%), Positives = 229/369 (62%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L  +++ A+ D G+ +P+PIQ ++IP+ ++ +D+ G AQTGTGKTA+F   +L  
Sbjct: 7   FNELNLKDEILKAINDMGFEEPSPIQSESIPVGIEGYDLIGQAQTGTGKTAAFGSIILNN 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + + R   R+P+ LIL PTRELA QV +   +  KN  L +  + GG P + Q + L  G
Sbjct: 67  MSEKR---RVPQALILAPTRELAIQVNEELVRIAKNMRLNILPIYGGQPIDRQLRALRNG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+LDH  R  L    ++ LV+DEAD ML+MGFI  I+ +   +   RQTLL
Sbjct: 124 VDIVVGTPGRVLDHLRRKSLNTEFVKFLVLDEADEMLNMGFIDDIEEVMKSLNEDRQTLL 183

Query: 183 FSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           FSATM D ++++S+ +++ + K I +   + TA TI   +  +    ++   C ++    
Sbjct: 184 FSATMPDAIKRLSKRYMKSDAKLISIEKNTVTASTITQYYYEIKNSDRFESLCRII---- 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D  +  IIFC  KK V  L  S++++G+ V  +HG+++Q  RM  L  FKE  +  +
Sbjct: 240 -DADEPEAAIIFCKTKKGVDELVSSMQRRGYVVEGMHGDMNQNQRMNTLKKFKESNLDFL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V HV N+D+P  AE+Y+HRIGRTGRA + GKA+TLV   +   +  
Sbjct: 299 VATDVAARGIDVENVTHVINYDLPQDAESYVHRIGRTGRANKEGKAYTLVTPREYIVLKQ 358

Query: 360 IEKLIEKKV 368
           IEK  + K+
Sbjct: 359 IEKTTKSKI 367


>gi|319938761|ref|ZP_08013125.1| superfamily II DNA and RNA helicase [Streptococcus anginosus
           1_2_62CV]
 gi|319811811|gb|EFW08077.1| superfamily II DNA and RNA helicase [Streptococcus anginosus
           1_2_62CV]
          Length = 565

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 145/369 (39%), Positives = 231/369 (62%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L  
Sbjct: 50  FNELHLSAELLAEIDKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL-- 107

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            EK      + + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L  G
Sbjct: 108 -EKINTENPIVQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALRSG 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A +++ TPGR+LD   R  L +N++E L++DEAD ML+MGF+  I+ I S VP  RQTLL
Sbjct: 167 AHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPEERQTLL 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D ++++   F++ P  +++     T E ++  ++    + ++K   + +L+  +
Sbjct: 227 FSATMPDAIKRIGMKFMKEPTHVKIAAKELTTELVDQYYIRV--KENEKFDTMTRLMDVE 284

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++VA+
Sbjct: 285 QP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  IE 
Sbjct: 344 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQIIEN 403

Query: 363 LIEKKVDWL 371
           L +K++  +
Sbjct: 404 LTKKRMKGM 412


>gi|153837953|ref|ZP_01990620.1| RhlE [Vibrio parahaemolyticus AQ3810]
 gi|260902800|ref|ZP_05911195.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|149748644|gb|EDM59503.1| RhlE [Vibrio parahaemolyticus AQ3810]
 gi|308108629|gb|EFO46169.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
          Length = 411

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 152/362 (41%), Positives = 221/362 (61%), Gaps = 4/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV   GY KPT IQ K IP+VL+  ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSAPITDAVTALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G   R +  R +IL PTRELA QV  + E YGKN  L    + GG+ +  Q + L
Sbjct: 61  EKLSQGETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVEYAPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR++D + +  +  + +E+LV+DEAD+MLDMGFI  I  I   +P   Q
Sbjct: 121 IEGVDIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIIDCMPEDVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT+++ ++ +++N + +P+ I +   S++   I+     T      K +LL  +L
Sbjct: 181 SLLFSATLSNPVRDLAKNAIVDPEEITIAKHSASKSNIKQWI--TTVDKDMKSSLLSHML 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     +IF   K     L   LEK+G    A H   +QR R +++  FK G IQ +
Sbjct: 239 NEND-WSQVLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI ++  V N+D+P  A+ Y+HRIGRTGRAG  G+A +LV+K+D K++  
Sbjct: 298 VATGVAARGIDIDNLPVVINYDLPFPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCM 357

Query: 360 IE 361
           IE
Sbjct: 358 IE 359


>gi|21232073|ref|NP_637990.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|21113816|gb|AAM41914.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 642

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 148/373 (39%), Positives = 227/373 (60%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV   GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 11  FADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
            +  + +   P+ L+L PTRELA QVA+ F+KY +      V  + GG P+  Q   L+R
Sbjct: 71  ADLNQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P  + +   ++T+  I   +   +     K   L ++L+ 
Sbjct: 188 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRY--WWVSGLHKLDALTRILEV 245

Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   IIF   K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++
Sbjct: 246 EPFDGM---IIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDIL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  V HV N+D+P   E+Y+HRIGRTGRAGR+G A   V   +   + A
Sbjct: 303 VATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRA 362

Query: 360 IEKLIEKKVDWLN 372
           IE+   + ++ + 
Sbjct: 363 IERATRQPIEEMQ 375


>gi|3288677|dbj|BAA31233.1| rhlE [Vibrio alginolyticus]
          Length = 411

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 152/362 (41%), Positives = 221/362 (61%), Gaps = 4/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV   GY KPT IQ K IP+VL+  ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSASITDAVKALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G   R +  R +IL PTRELA QV  + E YGKN  L    + GG+ +  Q + L
Sbjct: 61  EKLSQGETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVEYAPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR++D + +  +  + +E+LV+DEAD+MLDMGFI  I  I   +P   Q
Sbjct: 121 IEGVDIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIIDCMPEDVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT+++ ++ +++N + +P+ I +   S++   I+     T      K +LL  +L
Sbjct: 181 SLLFSATLSNPVRDLAKNAIVDPEEITIAKHSASKSNIKQWI--TTVDKDMKSSLLSHML 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     +IF   K     L   LEK+G    A H   +QR R +++  FK G IQ +
Sbjct: 239 NEND-WSQVLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI ++  V N+D+P  A+ Y+HRIGRTGRAG  G+A +LV+K+D K++  
Sbjct: 298 VATGVAARGIDIDNLPVVINYDLPFPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCM 357

Query: 360 IE 361
           IE
Sbjct: 358 IE 359


>gi|62390044|ref|YP_225446.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
           13032]
 gi|41325380|emb|CAF19860.1| Superfamily II DNA and RNA helicase [Corynebacterium glutamicum
           ATCC 13032]
          Length = 732

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 149/361 (41%), Positives = 222/361 (61%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  +V+ AV   GY  P+PIQ +TIP++++  DV G+AQTGTGKTA+F LP+L  
Sbjct: 104 FDALGLPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTGTGKTAAFALPILAR 163

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++K    VR P+ L+L PTRE A QVAD+F+ +  +   L V  + GG  +  Q   L R
Sbjct: 164 IDKS---VRSPQALVLAPTREQALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRR 220

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  +G L ++ +  LV+DEAD ML+MGF   ++ I    P  +Q  
Sbjct: 221 GAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVA 280

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++S+ +L NP  I V + + T   I   F+   A  +K  AL + L  +
Sbjct: 281 LFSATMPNGIRRLSKQYLNNPAEITVKSETRTNTNITQRFL-NVAHRNKMDALTRILEVT 339

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  I+F   K     +   L  +GFS  AI+G+I Q  R + +   K+G + ++VA
Sbjct: 340 E--FEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 397

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV NFD+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 398 TDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 457

Query: 362 K 362
           +
Sbjct: 458 R 458


>gi|227878361|ref|ZP_03996316.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus crispatus
           JV-V01]
 gi|256849208|ref|ZP_05554641.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           MV-1A-US]
 gi|293380351|ref|ZP_06626422.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1]
 gi|227862040|gb|EEJ69604.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus crispatus
           JV-V01]
 gi|256713984|gb|EEU28972.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           MV-1A-US]
 gi|290923034|gb|EFD99965.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1]
          Length = 495

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 154/396 (38%), Positives = 244/396 (61%), Gaps = 16/396 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+  ++ A+  +G+ + TPIQ +TIPL LQ  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++K    ++    +I+EPTRELA Q  +   + G++ +  V ++ GG     Q + L+
Sbjct: 61  QMIDKKEKAIQ---AVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLK 117

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LDH  R  + ++ ++ +V+DEAD MLDMGFI  I++I       +Q
Sbjct: 118 HHVPSILVGTPGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + ++ E F+ +P+ + +     TA+ IE  FV   A+ S+K  ++ +L+
Sbjct: 178 TLLFSATMPKPILRIGEKFMDHPEIVRIKAKELTADLIEQYFVR--AKESEKFDIMCRLI 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      ++F   K+ V  L   L+ +G++   IHG++ Q  RM +L  F+EG + ++
Sbjct: 236 DVQGP-DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           IE+L +KK       +S L PP +  D A H   ++
Sbjct: 355 IEQLTKKK-------MSPLRPPTD--DQALHGQLKQ 381


>gi|66767801|ref|YP_242563.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188990915|ref|YP_001902925.1| Cold-shock DEAD-box protein A [Xanthomonas campestris pv.
           campestris str. B100]
 gi|66573133|gb|AAY48543.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167732675|emb|CAP50869.1| Cold-shock DEAD-box protein A [Xanthomonas campestris pv.
           campestris]
          Length = 642

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 148/373 (39%), Positives = 227/373 (60%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV   GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 11  FADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
            +  + +   P+ L+L PTRELA QVA+ F+KY +      V  + GG P+  Q   L+R
Sbjct: 71  ADLNQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P  + +   ++T+  I   +   +     K   L ++L+ 
Sbjct: 188 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRY--WWVSGLHKLDALTRILEV 245

Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   IIF   K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++
Sbjct: 246 EPFDGM---IIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDIL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  V HV N+D+P   E+Y+HRIGRTGRAGR+G A   V   +   + A
Sbjct: 303 VATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRA 362

Query: 360 IEKLIEKKVDWLN 372
           IE+   + ++ + 
Sbjct: 363 IERATRQPIEEMQ 375


>gi|322384200|ref|ZP_08057910.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321151092|gb|EFX44409.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 486

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 145/349 (41%), Positives = 219/349 (62%), Gaps = 6/349 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ + TPIQ KTIPL LQ HD+ G AQTGTGKTA+F +P++  ++    ++     L++ 
Sbjct: 2   GFEEATPIQAKTIPLALQGHDLIGQAQTGTGKTAAFGVPLINKIDTAADKIV---ALVMC 58

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA QVA+   K G+   +    + GG     Q + L++   ++I TPGR+LDH NR
Sbjct: 59  PTRELAIQVAEEISKLGRFKGIRSLPIYGGQDIVKQIRALKKKPQIIIGTPGRLLDHINR 118

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
             + +  +E +V+DEAD MLDMGF+  IQ+I S VP  R T+LFSATM   +QK++  FL
Sbjct: 119 KTIKLEGVETVVLDEADEMLDMGFMDDIQSILSQVPEERHTMLFSATMPPNIQKLAHQFL 178

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
           +NP+ + V     +A  I   ++  + +  +K   L +LL   +  +  IIF   K+ V 
Sbjct: 179 RNPQHVSVIPKQVSAPLIAQAYIEVHEK--QKFEALSRLL-DMEAPELAIIFGRTKRRVD 235

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            L  +L+K+G++   +HG++ Q  R  ++  F++G+I ++VA+D+AARGLD+  V HV N
Sbjct: 236 ELSEALQKRGYAAEGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARGLDVSGVSHVIN 295

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           FD+P   E+Y+HRIGRTGRAG+ G A+T V   +I H+  IEK+   K+
Sbjct: 296 FDLPQDPESYVHRIGRTGRAGKEGTAWTFVTPREIDHLHFIEKVTRHKI 344


>gi|328952772|ref|YP_004370106.1| DEAD/DEAH box helicase domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328453096|gb|AEB08925.1| DEAD/DEAH box helicase domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 415

 Score =  286 bits (732), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 164/418 (39%), Positives = 238/418 (56%), Gaps = 21/418 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+      +V   V+ A +  PTPIQ K IPL++Q HDV G+A TGTGKTA+FVLP+L
Sbjct: 1   MEFSIFDFHHQVTAGVVAARFRTPTPIQAKAIPLIMQGHDVVGLAHTGTGKTAAFVLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +G  R    R L++ PTRELA Q+ +     G    L    + GG+ F  Q  KL+
Sbjct: 61  HRLMQGERR--QVRALVIAPTRELAQQIHEAIGTLGSRTGLRSVTIYGGVGFNPQVDKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA++++  PGR+LDH N+G + ++N+E+LV+DE+DRM DMGF+P I+ I   VP  RQT
Sbjct: 119 RGAEIVVACPGRLLDHMNQGTIDLSNLEVLVLDESDRMFDMGFLPDIRKIIKHVPTERQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D++  ++   L+ P  ++VN     A  + H           K ALL +LL+
Sbjct: 179 LLFSATMPDDILHLAHEVLKAPVTVQVNNIGP-AINVSHRLYPIKQHL--KTALLLELLR 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +T ++ +IF   K     L   L K G+   ++ GN+ Q  R  +++ F+ GT Q++V
Sbjct: 236 HTNT-ESVLIFTRTKHRAKRLGEQLGKAGYRATSLQGNLSQGRRQAVMNGFRNGTFQILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+D+P+  + Y HRIGRTGR  + G AFT +  ED   +  I
Sbjct: 295 ATDIAARGIDVTQISHVINYDMPDTIDAYTHRIGRTGRNTKTGDAFTFITSEDEDMVRRI 354

Query: 361 EKLIEKKV--------DWLNGDL---SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           E ++  +V        D+   D      L  PL +   AQ    RK    P K  G D
Sbjct: 355 ENVLRTRVRHCILDGFDYKKADALPDCKLARPLSQ---AQRRRERKKTE-PSKGRGKD 408


>gi|258620256|ref|ZP_05715295.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
           VM573]
 gi|258623978|ref|ZP_05718931.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
           VM603]
 gi|258583772|gb|EEW08568.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
           VM603]
 gi|258587614|gb|EEW12324.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
           VM573]
          Length = 422

 Score =  286 bits (732), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 151/379 (39%), Positives = 231/379 (60%), Gaps = 9/379 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGL P ++  + D G V PTPIQ + IP VLQ  DV   AQTGTGKTA+F LP++
Sbjct: 6   ITFSQLGLDPHLLNTLSDLGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65

Query: 61  T-ILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
              +E+   R    +  R L+L PTRELA QV D+ + Y K   L +  + GG   + Q 
Sbjct: 66  QRFIEQPWVREENSKEIRALVLVPTRELAQQVLDSMQAYAKGTELKIVAVYGGTSMKVQL 125

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G D+LI TPGR+LDH +   L +  +E+LV+DEADRMLDMGF+P +Q +   +  
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSAT   +++ V+   +++P  ++V   +STAET++           +K  LL 
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPVEVQVTPSNSTAETVQQMVYPV--DKKRKRELLS 243

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L+ S++  +  ++F   ++    L   L+  G    +I+G+  Q +R K L +FK G +
Sbjct: 244 YLIGSKN-WQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L++ ++   
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEEPQ 362

Query: 357 IDAIEKLIEKKV--DWLNG 373
           ++AIE+L+  ++  +WL G
Sbjct: 363 LEAIERLLNTRLPQEWLKG 381


>gi|254236843|ref|ZP_04930166.1| hypothetical protein PACG_02863 [Pseudomonas aeruginosa C3719]
 gi|126168774|gb|EAZ54285.1| hypothetical protein PACG_02863 [Pseudomonas aeruginosa C3719]
          Length = 449

 Score =  286 bits (732), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 151/366 (41%), Positives = 225/366 (61%), Gaps = 5/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   G+  PTPIQ + IP  L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               LE  +      R L+L PTRELA QV  +   YG++  L  A+  GG+    Q  K
Sbjct: 61  QRLTLEGPQVAANSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD + +  +    ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D ++ ++   L++P  IEV+  ++ A+++    V       +K  L   L
Sbjct: 181 QTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPV--DKKRKVELFCHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ+ +  +  ++F   +K+V  L   L++QG +  +IHG+  Q +R++ L  FK G + L
Sbjct: 239 LQA-NRWRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDL 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 MVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLA 357

Query: 359 AIEKLI 364
           AIE LI
Sbjct: 358 AIETLI 363


>gi|87120846|ref|ZP_01076739.1| ATP-dependent RNA helicase [Marinomonas sp. MED121]
 gi|86164074|gb|EAQ65346.1| ATP-dependent RNA helicase [Marinomonas sp. MED121]
          Length = 443

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 158/378 (41%), Positives = 223/378 (58%), Gaps = 20/378 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  ++ AV   GY +PT IQ + IP +L   ++   +QTGTGKTASFVLP+L
Sbjct: 1   MSFAKLGLSTPILNAVAKLGYTQPTSIQKQAIPAILLDRNLLAASQTGTGKTASFVLPLL 60

Query: 61  TILEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L + R        R +  R L+L PTRELA QV ++  +YGK  + T   L GG+   
Sbjct: 61  EKLFRNRRYNGQTKVRGKRVRILVLTPTRELATQVEESIAEYGKELDFTSMALYGGVDEV 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q ++L  G D L+ TPGR++D  ++  L  + +E LV+DEADRMLDMGFI  I NI   
Sbjct: 121 PQKERLIEGVDFLVATPGRLVDMVHQRALHFDEVETLVLDEADRMLDMGFIDDIYNIIDR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENF----LQNPK------RIEVNTPSSTAETIEHCFVA 223
           +P  RQ LLFSAT+ D ++ +S  F    ++N +       I ++   ++A +I+ C + 
Sbjct: 181 LPDDRQNLLFSATLNDHVRNLSTTFSGVGMENKEFYDDLLEINISPKETSASSIDQCLIT 240

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
                  K ALL  L++ Q+     +IF  +K     L   LEK+G     IHG+  Q  
Sbjct: 241 V--DKDTKSALLSHLIKEQE-WDQALIFIEKKHGAAKLVSQLEKRGIKADCIHGDRSQSM 297

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R K+L+ FK G ++ +VA+ +AARG+DI D+  V N+D+P + E YIHRIGRTGRAG  G
Sbjct: 298 REKVLAEFKSGELKYLVATGVAARGIDIGDLTRVVNYDLPFKPEEYIHRIGRTGRAGAAG 357

Query: 344 KAFTLVAKEDIKHIDAIE 361
           +A + VA  D K++ AIE
Sbjct: 358 EAVSFVAMGDFKNLCAIE 375


>gi|150376621|ref|YP_001313217.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150031168|gb|ABR63284.1| DEAD/DEAH box helicase domain protein [Sinorhizobium medicae
           WSM419]
          Length = 498

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 162/415 (39%), Positives = 242/415 (58%), Gaps = 4/415 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS +++  +   G+ KPTPIQ + IPLVLQ  D+ G+AQTGTGKTA+F LPM+  
Sbjct: 4   FKELGLSQEILATLTANGFEKPTPIQTQAIPLVLQGRDLIGLAQTGTGKTAAFGLPMIEK 63

Query: 63  LEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L+    R   R  R LIL PTREL  Q+A N + + K   + V +++GG+    Q ++L 
Sbjct: 64  LQADGKRPDPRNIRALILAPTRELVNQIATNLKLFVKKTPIKVGVVVGGVSINKQTEQLA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+LD  +R  + +     LV+DEAD+MLD+GFI  ++ I  LVP  RQT
Sbjct: 124 RGVDILVATPGRLLDLISRKAVTLTQGRYLVLDEADQMLDLGFIHDLRKIAKLVPKNRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + +++  +L +P ++EV  P   A+ +E        +  K   L Q L  
Sbjct: 184 LLFSATMPKLIAELAGEYLTDPVKVEVTRPGKAADKVEQYVHFVPGKDLKTTILKQTLTA 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D +   ++F   K     L   L++ GF   +IHGN  Q  R + L  F++G I+++V
Sbjct: 244 NPDGLS--LVFSRTKHGAEKLMKHLDQVGFKAASIHGNKSQGQRERALKAFRDGEIRVLV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DIP V HV+N+D+P  A+ Y+HRIGRT R GR G A    A ++I+ +  I
Sbjct: 302 ATDVAARGIDIPGVTHVYNYDLPEVADAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDI 361

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           EKL+  ++   +G++ +      K    + N   + N   Q+  G  R +    S
Sbjct: 362 EKLMGIEIAVASGEVPADQARPSKGRGGRGNAQSRGNGAGQRQGGPRRDRPQRQS 416


>gi|18395852|ref|NP_566141.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|16226725|gb|AAL16243.1|AF428313_1 AT3g01540/F4P13_9 [Arabidopsis thaliana]
 gi|15215694|gb|AAK91393.1| AT3g01540/F4P13_9 [Arabidopsis thaliana]
 gi|32306509|gb|AAP78938.1| At3g01540 [Arabidopsis thaliana]
 gi|332640163|gb|AEE73684.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
          Length = 618

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 146/369 (39%), Positives = 223/369 (60%), Gaps = 8/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G  P+++  VL AG+  PTPIQ ++ P+ +Q  D+  IA+TG+GKT  +++P  
Sbjct: 158 MSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGF 217

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L++ R   RM P  L+L PTRELA Q+ +   K+G++  ++   L GG P   Q + L
Sbjct: 218 LHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDL 277

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGAD+++ TPGR+ D     ++ +  I  LV+DEADRMLDMGF P I+ I   +P  RQ
Sbjct: 278 ERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQ 337

Query: 180 TLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           TL+++AT    ++K++ + L NP ++    V+   +     +H  V    +  ++   L+
Sbjct: 338 TLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRR---LE 394

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q+L+SQ+     IIFC+ K+    L  +L +Q F   AIHG+  Q  R  +L+ F+ G  
Sbjct: 395 QILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRT 453

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+ D+  V N+D PN  E+Y+HRIGRTGRAG  G+AFT    +D KH
Sbjct: 454 PVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKH 513

Query: 357 IDAIEKLIE 365
              + K++E
Sbjct: 514 ASDLIKILE 522


>gi|85373802|ref|YP_457864.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
 gi|84786885|gb|ABC63067.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
          Length = 492

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 151/375 (40%), Positives = 223/375 (59%), Gaps = 8/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  V+ A+   GY +PTPIQ + IP VL+  D+ GIAQTGTGKTA+F+LP +  
Sbjct: 6   FDQLGLSQPVLQALDMKGYNEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSIDR 65

Query: 63  LEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L +   +   +  R L+L PTRELA Q+A + + YG    L V  ++GG        KL 
Sbjct: 66  LREADNQTPFKSCRMLVLAPTRELAGQIAQSAKDYGAMAGLKVHSIVGGTSVGKDRNKLH 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+LD  ++    +N +EILV+DEAD+MLD+GFI  ++ I  LVP  RQT
Sbjct: 126 RGTDILVATPGRLLDLIDQKAFKLNAVEILVLDEADQMLDLGFIHALRQINDLVPAERQT 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  ++Q++   + +NP ++ V   ++TAE I+        Q  +K AL++ +L+
Sbjct: 186 LFFSATMPKQIQELVGKYCRNPVKVSVTPAATTAERIDQYLF--MVQQDEKQALIEMILK 243

Query: 241 SQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +  +       ++F   K     +   L + G    AIHGN  Q  R + L  FK    
Sbjct: 244 GRHAVPGKQERILVFTRTKHGADRVVKKLRQAGIESNAIHGNKSQPQRQRALDEFKRAKT 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARG+DIP V HV N+++PN  E Y+HRIGRT RAG+ G A    A+++  +
Sbjct: 304 PILIATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGKDGVAIAFCAEDERAY 363

Query: 357 IDAIEKLIEKKVDWL 371
           +  I+K  + + D L
Sbjct: 364 LKDIQKNTDAEFDRL 378


>gi|308389528|gb|ADO31848.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha710]
          Length = 457

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 160/423 (37%), Positives = 251/423 (59%), Gaps = 21/423 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L+        P     R L+L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKSYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +K  LL++
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTIQKRNLLER 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G ++
Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416
           ++I++L   K+             +E+I+  +     +    P+K    + R++N Y S 
Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRYESA 409

Query: 417 KSH 419
           K+ 
Sbjct: 410 KAQ 412


>gi|297578974|ref|ZP_06940902.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
 gi|297536568|gb|EFH75401.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
          Length = 398

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 155/373 (41%), Positives = 226/373 (60%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V  V   GY KPT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YGK+  L    + GG+  +AQ ++L
Sbjct: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  +++P  I +    ++   I    +        K ALL  L+
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV--DKDTKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  ++  +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 239 NEQQWVQ-ALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357

Query: 360 IEK----LIEKKV 368
           IE     LIE++V
Sbjct: 358 IESRLGHLIERRV 370


>gi|15614947|ref|NP_243250.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
 gi|10175004|dbj|BAB06103.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
          Length = 539

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 144/368 (39%), Positives = 231/368 (62%), Gaps = 7/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L +  ++  A+++ G+ +P+PIQ K IP +L   DV G AQTGTGKTA+F +P++
Sbjct: 6   IKFNELQIGEEIKKAIIEMGFEEPSPIQAKAIPAILAGGDVIGQAQTGTGKTAAFGIPVV 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +  GR      + LIL PTRELA QV+   +K  K+  +    + GG     Q K L+
Sbjct: 66  EKVSTGR----HVQALILTPTRELAIQVSGEIQKLSKHKKIRTLPIYGGQSIVHQIKALK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V+I TPGRI+DH  R  L+++++  +++DEAD MLDMGFI  I++I   V   RQT
Sbjct: 122 QGVQVVIGTPGRIIDHLRRKTLILDHVNTVILDEADEMLDMGFIDDIESILRQVKNERQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+S  ++ +P+ + +N    TA +I+  +     +   K   L +++ 
Sbjct: 182 LLFSATMPPAIKKLSRKYMNDPQTVSINRREVTAPSIDQFYYKVLER--NKLDSLCRIID 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +  GI+FC  KK V  L  +L+ +G+    +HG++ Q  R  ++  F++ +I+ ++
Sbjct: 240 SEQ-IDLGILFCRTKKGVAELTEALQARGYIADGLHGDLTQSQRDAVMRKFRDSSIEFLI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ +V HV N+D+P   E+Y+HRIGRTGRAGR G A TLV   ++KH+ +I
Sbjct: 299 ATDVAARGIDVGNVSHVINYDIPQDPESYVHRIGRTGRAGRKGLALTLVTPREMKHLRSI 358

Query: 361 EKLIEKKV 368
           E+ I+  +
Sbjct: 359 EQEIKMSI 366


>gi|288554498|ref|YP_003426433.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288545658|gb|ADC49541.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 502

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 150/368 (40%), Positives = 221/368 (60%), Gaps = 10/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + GL+ +VV AV   G+ + TPIQ  TIP  L+  D+ G AQTGTGKT +F +P++  
Sbjct: 4   FYEFGLNSEVVRAVTQMGFEEATPIQAATIPTALEGKDIIGQAQTGTGKTGAFGVPLIDR 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +      V+    LIL PTRELA QVA++  K+GK   +   ++ GG     Q + L+  
Sbjct: 64  INIENDHVQ---ALILAPTRELANQVAESLFKFGKYKGVRTVVVYGGQDMRKQIRDLKNK 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR++DH  R  + +  +E +V+DEAD ML+MGFI  I+ I S VP  RQTLL
Sbjct: 121 PHVVVATPGRLMDHMRRKTIRLGQVETVVLDEADEMLNMGFIEDIETILSEVPNERQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQQLLQ 240
           FSATM   ++K+++ F+  PK I V +   T E IE  +V  +   ++   C  +     
Sbjct: 181 FSATMPKRIEKLAQTFMSEPKLIAVKSKEVTMENIEQQYVEVHERQKFDTLCRFI----- 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  I+F   K+ V  L  +L K+G+    IHG+++Q  R  +L  FK G + ++V
Sbjct: 236 DIHTPELAIVFGRTKRRVDELSEALTKRGYRAEGIHGDLNQAKRDSVLRKFKNGLVDVLV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T     + +H+  I
Sbjct: 296 ATDVAARGLDITGVTHVYNFDLPQDPESYVHRIGRTGRAGKSGLALTFATPREREHVKTI 355

Query: 361 EKLIEKKV 368
           E++ +KK+
Sbjct: 356 EQVSKKKM 363


>gi|30678365|ref|NP_850492.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|42572223|ref|NP_974206.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|79295442|ref|NP_001030619.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|108861885|sp|Q8H136|RH14_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 14
 gi|6016713|gb|AAF01539.1|AC009325_9 RNA helicase, DRH1 [Arabidopsis thaliana]
 gi|3149952|dbj|BAA28347.1| DRH1 [Arabidopsis thaliana]
 gi|332640162|gb|AEE73683.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
 gi|332640164|gb|AEE73685.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
 gi|332640165|gb|AEE73686.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
          Length = 619

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 146/369 (39%), Positives = 223/369 (60%), Gaps = 8/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G  P+++  VL AG+  PTPIQ ++ P+ +Q  D+  IA+TG+GKT  +++P  
Sbjct: 158 MSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGF 217

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L++ R   RM P  L+L PTRELA Q+ +   K+G++  ++   L GG P   Q + L
Sbjct: 218 LHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDL 277

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGAD+++ TPGR+ D     ++ +  I  LV+DEADRMLDMGF P I+ I   +P  RQ
Sbjct: 278 ERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQ 337

Query: 180 TLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           TL+++AT    ++K++ + L NP ++    V+   +     +H  V    +  ++   L+
Sbjct: 338 TLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRR---LE 394

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q+L+SQ+     IIFC+ K+    L  +L +Q F   AIHG+  Q  R  +L+ F+ G  
Sbjct: 395 QILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRT 453

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+ D+  V N+D PN  E+Y+HRIGRTGRAG  G+AFT    +D KH
Sbjct: 454 PVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKH 513

Query: 357 IDAIEKLIE 365
              + K++E
Sbjct: 514 ASDLIKILE 522


>gi|242280538|ref|YP_002992667.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
 gi|242123432|gb|ACS81128.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
          Length = 493

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 159/407 (39%), Positives = 235/407 (57%), Gaps = 21/407 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F       +++  +   GY  PTPIQ K IP VL+  DV G+AQTGTGKTA+F LP M
Sbjct: 1   MSFKQFSFDRRIMAGIHACGYETPTPIQTKAIPEVLKGRDVMGLAQTGTGKTAAFALPIM 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +LEK  +     R L+L PTRELA Q+ +NF + G    +  A + GG+    Q +  
Sbjct: 61  QRLLEKKFSGQGPIRVLVLAPTRELALQIHENFMELGVEAGIRSAAVFGGVGAMPQIQAA 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R + ++ C PGR+LD  N+G + ++ ++ LV+DEADRMLDMGF+P I+ I S +P  RQ
Sbjct: 121 RRSSVIVAC-PGRLLDLMNQGVIKLDKVDTLVLDEADRMLDMGFLPDIRKIMSKLPQRRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM D+++ +++  L  P  ++V   ++ A+T+EH F    +Q+ K   L + L 
Sbjct: 180 NLLFSATMPDDIRDLADKILYRPATVQVAN-TAPAKTVEHVFYPV-SQHLKNNLLFKVLE 237

Query: 240 QSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           Q+  D++   ++F   K    NL   L  +G     + GN+ Q  R + L  F++G+ ++
Sbjct: 238 QTDYDSL---LVFTRTKHKAKNLARRLAARGHKATFLQGNMSQNQRQRALDGFRDGSFKV 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARG+D   + HV N DVP+ AE Y HRIGRTGRAGR G AF+ V ++D++ + 
Sbjct: 295 MVATDIAARGIDCDRITHVVNLDVPDTAETYTHRIGRTGRAGRSGSAFSFVTRDDLRLMR 354

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            IEK +   ++            LE  D  + N     +P P K  G
Sbjct: 355 EIEKAVGYSIEHRT---------LEDFDYDKPN----THPAPAKRGG 388


>gi|325918892|ref|ZP_08180966.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC
           35937]
 gi|325534878|gb|EGD06800.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC
           35937]
          Length = 636

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 147/373 (39%), Positives = 228/373 (61%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV + GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 11  FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
            +  + +   P+ L+L PTRELA QVA+ F+KY +      V  + GG P+  Q   L+R
Sbjct: 71  ADLNQLK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P  + +   ++T+  I   +   +     K   L ++L+ 
Sbjct: 188 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRY--WWVSGLHKLDALTRILEV 245

Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   IIF   K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++
Sbjct: 246 EPFDGM---IIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDIL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  V HV N+D+P   E+Y+HRIGRTGRAGR+G A   V   +   + +
Sbjct: 303 VATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRS 362

Query: 360 IEKLIEKKVDWLN 372
           IE+   + ++ + 
Sbjct: 363 IERATRQPIEEMQ 375


>gi|262047224|ref|ZP_06020182.1| helicase [Lactobacillus crispatus MV-3A-US]
 gi|260572469|gb|EEX29031.1| helicase [Lactobacillus crispatus MV-3A-US]
          Length = 494

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 154/396 (38%), Positives = 244/396 (61%), Gaps = 16/396 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+  ++ A+  +G+ + TPIQ +TIPL LQ  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++K    ++    +I+EPTRELA Q  +   + G++ +  V ++ GG     Q + L+
Sbjct: 61  QMIDKKEKAIQ---AVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLK 117

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LDH  R  + ++ ++ +V+DEAD MLDMGFI  I++I       +Q
Sbjct: 118 HHVPSILVGTPGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + ++ E F+ +P+ + +     TA+ IE  FV   A+ S+K  ++ +L+
Sbjct: 178 TLLFSATMPKPILRIGEKFMDHPEIVRIKAKELTADLIEQYFV--RAKESEKFDIMCRLI 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      ++F   K+ V  L   L+ +G++   IHG++ Q  RM +L  F+EG + ++
Sbjct: 236 DVQGP-DLALVFGRTKRRVDELTRGLQARGYNAAEIHGDLSQARRMSVLKRFREGKLDIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           IE+L +KK       +S L PP +  D A H   ++
Sbjct: 355 IEQLTKKK-------MSPLRPPTD--DQALHGQLKQ 381


>gi|17065030|gb|AAL32669.1| RNA helicase, DRH1 [Arabidopsis thaliana]
          Length = 619

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 146/369 (39%), Positives = 223/369 (60%), Gaps = 8/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G  P+++  VL AG+  PTPIQ ++ P+ +Q  D+  IA+TG+GKT  +++P  
Sbjct: 158 MSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGF 217

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L++ R   RM P  L+L PTRELA Q+ +   K+G++  ++   L GG P   Q + L
Sbjct: 218 LHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDL 277

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGAD+++ TPGR+ D     ++ +  I  LV+DEADRMLDMGF P I+ I   +P  RQ
Sbjct: 278 ERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQ 337

Query: 180 TLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           TL+++AT    ++K++ + L NP ++    V+   +     +H  V    +  ++   L+
Sbjct: 338 TLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRR---LE 394

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q+L+SQ+     IIFC+ K+    L  +L +Q F   AIHG+  Q  R  +L+ F+ G  
Sbjct: 395 QILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRT 453

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+ D+  V N+D PN  E+Y+HRIGRTGRAG  G+AFT    +D KH
Sbjct: 454 PVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKH 513

Query: 357 IDAIEKLIE 365
              + K++E
Sbjct: 514 ASDLIKILE 522


>gi|197123442|ref|YP_002135393.1| DEAD/DEAH box helicase [Anaeromyxobacter sp. K]
 gi|196173291|gb|ACG74264.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp. K]
          Length = 478

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 151/399 (37%), Positives = 228/399 (57%), Gaps = 15/399 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL LS K + A+  AG+  PTPIQ + IP  L   DV G A TGTGKTA+F+LP++  
Sbjct: 9   FADLNLSEKTLQALERAGFEHPTPIQAQAIPPALGGRDVIGAAATGTGKTAAFLLPIIER 68

Query: 63  LEKGRARVR--------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           L  G  + R         PR L+L PTRELA Q+A   E++G+  ++  AL+IGG+   A
Sbjct: 69  LAGGAPKDRPAAAHGKPGPRALVLAPTRELAVQIAGELERFGRGRHVRGALVIGGVGMGA 128

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q+  L R  +V++ TPGR++DH  +G   ++ +E+LV+DEADRMLDMGF P ++ I + V
Sbjct: 129 QSAAL-RDHEVIVATPGRLVDHLQQGTARLDGLEVLVLDEADRMLDMGFAPQLKRILARV 187

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQTLLFSATM  E+   +   L++P R+EV    + AE  E        +      L
Sbjct: 188 PKVRQTLLFSATMAGEVADFARAHLRDPVRVEVARSGTLAERAEQRVFLPEQREKLPLLL 247

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
                    T+    +F   K+    +  +L++ G  V  IH +  Q  R   L  F++G
Sbjct: 248 ALLEEDDLSTL----VFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFRDG 303

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             +++VA+D+AARG+D+ ++GHV NFD+P+  E+Y+HR+GRT R    G+A    + E++
Sbjct: 304 QYRVLVATDIAARGIDVAEIGHVVNFDLPHVPEDYVHRVGRTARMAASGRASAFASPEEL 363

Query: 355 KHIDAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHN 391
             +  IE+L    +    +  + ++    L++ D AQ N
Sbjct: 364 DLLRDIERLTRAPIPRAEVPREHATFQAELQRADAAQAN 402


>gi|296332826|ref|ZP_06875286.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305673172|ref|YP_003864844.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150106|gb|EFG90995.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411416|gb|ADM36535.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 494

 Score =  286 bits (731), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 150/369 (40%), Positives = 226/369 (61%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS  ++ A+   G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F +P++  
Sbjct: 5   FQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +      ++    +++ PTRELA QV++   K G++    V  + GG     Q + L++ 
Sbjct: 65  INPESPNIQ---AIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKN 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH NR  + +NN+  +V+DEAD ML+MGFI  I++I S VP   QTLL
Sbjct: 122 PHIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +++++E F+  P+ ++V     T   I+  ++    Q  KK   L +LL  Q
Sbjct: 182 FSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLE--VQERKKFDTLTRLLDIQ 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM  L  FKEG I+++VA+
Sbjct: 240 -SPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVAT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFDVP   E+Y+HRIGRTGRAG+ G A T +   +   + AIE+
Sbjct: 299 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQ 358

Query: 363 LIEKKVDWL 371
             ++K+D +
Sbjct: 359 TTKRKMDRM 367


>gi|220934849|ref|YP_002513748.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219996159|gb|ACL72761.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 447

 Score =  286 bits (731), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 165/380 (43%), Positives = 237/380 (62%), Gaps = 16/380 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  ++ A+ + GY  PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L +
Sbjct: 7   FADLGLADPLLRALEETGYESPTPIQAQAIPEVLKGRDLRAAAQTGTGKTAGFTLPILQL 66

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           L      + G  R   PR L+L PTRELAAQV ++ E YGK   L   ++ GG+    Q 
Sbjct: 67  LSHRPALKSGPGR---PRCLVLTPTRELAAQVHESVETYGKYLTLRSLVMFGGVNINPQI 123

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L    D+++ TPGR+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ I  L+P 
Sbjct: 124 RALRGQVDIIVATPGRLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIHDIRRIMKLLPA 183

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCAL 234
            RQ LLFSAT +DE++ +++  L NP  +EV   ++TAE ++     V ++A    K  L
Sbjct: 184 RRQNLLFSATFSDEMRALADGILTNPASVEVAARNTTAERVQQQVHLVESHA----KRDL 239

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L++ Q+  +  ++F   K     L   L K G    AIHGN  Q +R K L  FK G
Sbjct: 240 LSHLIK-QNQWQQVLVFTRTKHGANRLAEKLSKDGIPAAAIHGNKSQAARTKALDQFKNG 298

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I ++VA+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV +E++
Sbjct: 299 RIPVLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGAAGAALSLVDREEM 358

Query: 355 KHIDAIEKLIEKKVDWLNGD 374
           + + +IE+LI + ++ +  +
Sbjct: 359 RLLTSIERLIRRPIERIQTE 378


>gi|21243540|ref|NP_643122.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109105|gb|AAM37658.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 632

 Score =  286 bits (731), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 146/373 (39%), Positives = 228/373 (61%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV + GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 11  FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
            +  + +   P+ L+L PTRELA QVA+ F+KY +      V  + GG P+  Q   L+R
Sbjct: 71  ADLNQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P  + +   ++T+  I   +   +     K   L ++L+ 
Sbjct: 188 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRY--WWVSGLHKLDALTRILEV 245

Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   IIF   K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++
Sbjct: 246 EPFDGM---IIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDIL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR+G A   V   +   + +
Sbjct: 303 VATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRS 362

Query: 360 IEKLIEKKVDWLN 372
           IE+   + ++ + 
Sbjct: 363 IERATRQPIEEMQ 375


>gi|325920710|ref|ZP_08182616.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865]
 gi|325548762|gb|EGD19710.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865]
          Length = 643

 Score =  286 bits (731), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 147/373 (39%), Positives = 227/373 (60%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV + GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 11  FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
            +  + +   P+ L+L PTRELA QVA+ F+KY +      V  + GG P+  Q   L+R
Sbjct: 71  ADLNQLK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P  + +   ++T+  I   +   +     K   L ++L+ 
Sbjct: 188 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRY--WWVSGLHKLDALTRILEV 245

Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   IIF   K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++
Sbjct: 246 EPFDGM---IIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDIL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  V HV N+D+P   E+Y+HRIGRTGRAGR G A   V   +   + +
Sbjct: 303 VATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTPREKGMLRS 362

Query: 360 IEKLIEKKVDWLN 372
           IE+   + ++ + 
Sbjct: 363 IERATRQPIEEMQ 375


>gi|310766260|gb|ADP11210.1| ATP-dependent RNA helicase DeaD [Erwinia sp. Ejp617]
          Length = 638

 Score =  286 bits (731), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 145/377 (38%), Positives = 237/377 (62%), Gaps = 11/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL+  ++ ++   GYVKP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FAELGLNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     V+ P+ L+L PTRELA QVA+    + K+   L V  L GG  ++ Q + L +
Sbjct: 68  IDP---TVKAPQILVLAPTRELAVQVAEAVTDFSKHMRGLNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++ F+++P+ + + +  +T   I   +   +  Y +K   L + L++
Sbjct: 185 LFSATMPEAIRRITKRFMKDPQEVRIQSSLTTRPDISQSY---WTAYGRKTDALTRFLEA 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 242 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 301 TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 360

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 361 RTMKLTIPEVELPNAEL 377


>gi|296139030|ref|YP_003646273.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
 gi|296027164|gb|ADG77934.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
           DSM 20162]
          Length = 602

 Score =  286 bits (731), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 147/361 (40%), Positives = 221/361 (61%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+  +V+ A+ + GY  P+PIQ  TIP +L  +DV G+AQTGTGKTA+F +P+L+ 
Sbjct: 30  FLDLGIDERVLRALAEVGYENPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPVLSK 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++      R P+ L+L PTRELA QV++ F KY  +  N+TV  + GG  +  Q   L R
Sbjct: 90  ID---GESRTPQALVLAPTRELALQVSEAFGKYAVHMPNITVLPIYGGQSYGVQLSGLRR 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  +G L ++N+E LV+DEAD ML MGF   ++ I +  P  +Q  
Sbjct: 147 GAQIIVGTPGRVIDHLEKGTLDLSNLEFLVLDEADEMLTMGFQEDVERILADTPEFKQVA 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K+++ +L +P  I V   ++T   I   ++    Q  +K   L +LL+ 
Sbjct: 207 LFSATMPPAIRKIAKKYLHDPVEISVKAKTATGSNITQRYLQVAHQ--RKLDALTRLLEV 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++     IIF   K     L   L  +G +  AI+G+I Q  R + +   K+G + ++VA
Sbjct: 265 EE-FDGMIIFVRTKSATEELAEKLRARGHAAAAINGDIVQAQRERTIGQLKDGKVDILVA 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V   +   + AIE
Sbjct: 324 TDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRKGDALLFVTPRERHLLRAIE 383

Query: 362 K 362
           K
Sbjct: 384 K 384


>gi|153212702|ref|ZP_01948359.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
 gi|124116352|gb|EAY35172.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
          Length = 397

 Score =  286 bits (731), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 155/373 (41%), Positives = 225/373 (60%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V  V   GY KPT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YGK+  L    + GG+  +AQ ++L
Sbjct: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  +++P  I +    ++   I    +    +   K ALL  L+
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKE--TKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 239 NEQQ-WDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357

Query: 360 IEK----LIEKKV 368
           IE     LIE++V
Sbjct: 358 IESRLGHLIERRV 370


>gi|238059366|ref|ZP_04604075.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           sp. ATCC 39149]
 gi|237881177|gb|EEP70005.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           sp. ATCC 39149]
          Length = 576

 Score =  285 bits (730), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 147/367 (40%), Positives = 216/367 (58%), Gaps = 3/367 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL  +++ A+   GY +PTPIQ + IP +L   D+ G A TGTGKTA+F LP+L  
Sbjct: 28  FTDLGLRAELLGALSALGYEEPTPIQREAIPPLLAGRDLLGQAATGTGKTAAFALPLLHR 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +  GRA    P  L+L PTRELA QV++ F +YGK+    V  + GG P   Q + L+ G
Sbjct: 88  MPDGRAGGE-PVALVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALDLG 146

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR LDH  RG L +  +  +V+DEAD MLDMGF   I+ I    P  RQT+L
Sbjct: 147 VDVVVATPGRALDHIARGTLRLGGLATVVLDEADEMLDMGFAEDIEAILEHAPQQRQTVL 206

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQS 241
           FSATM   +  ++   L +P RI++      A        + Y    + K A L ++L  
Sbjct: 207 FSATMPSRIDGMARQHLTDPVRIQIGREQQVAGETPRVRQSAYIVARAHKPAALGRVLDV 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + +    I+FC  ++ V  L  ++  +G+   A+HG + Q  R +++   + GT  L+VA
Sbjct: 267 E-SPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVA 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+DVP+  E+Y+HRIGR GRAGR G A TL    + + +  IE
Sbjct: 326 TDVAARGLDVEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIE 385

Query: 362 KLIEKKV 368
           ++  +++
Sbjct: 386 RVTGQRI 392


>gi|312978402|ref|ZP_07790144.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           crispatus CTV-05]
 gi|310894745|gb|EFQ43817.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           crispatus CTV-05]
          Length = 495

 Score =  285 bits (730), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 154/396 (38%), Positives = 244/396 (61%), Gaps = 16/396 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+  ++ A+  +G+ + TPIQ +TIPL LQ  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++K    ++    +I+EPTRELA Q  +   + G++ +  V ++ GG     Q + L+
Sbjct: 61  QMIDKKEKAIQ---AVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLK 117

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LDH  R  + ++ ++ +V+DEAD MLDMGFI  I++I       +Q
Sbjct: 118 HHVPSILVGTPGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + ++ E F+ +P+ + +     TA+ IE  FV   A+ S+K  ++ +L+
Sbjct: 178 TLLFSATMPKPILRIGEKFMDHPEIVRIKAKELTADLIEQYFVR--AKESEKFDIMCRLI 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      ++F   K+ V  L   L+ +G++   IHG++ Q  RM +L  F+EG + ++
Sbjct: 236 DVQGP-DLALVFGRTKRRVDELTRGLQARGYNAAEIHGDLSQARRMSVLKRFREGKLDIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           IE+L +KK       +S L PP +  D A H   ++
Sbjct: 355 IEQLTKKK-------MSPLRPPTD--DQALHGQLKQ 381


>gi|260175083|ref|ZP_05761495.1| putative ATP-dependent RNA helicase [Bacteroides sp. D2]
 gi|315923311|ref|ZP_07919551.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697186|gb|EFS34021.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 374

 Score =  285 bits (730), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 153/371 (41%), Positives = 227/371 (61%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L ++  ++ A+ + GY  PTPIQ + IP  L + D+ G AQTGTGKTASF +P++
Sbjct: 1   MTFKELNITEPILKAIEEKGYAVPTPIQGEAIPAALAKRDILGCAQTGTGKTASFAIPII 60

Query: 61  TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L+  K  A+ R  + LIL  TRELA Q+++    Y K   +   ++ GG+    Q   
Sbjct: 61  QHLQMNKEAAKCRGIKALILTSTRELALQISECINDYAKYTQVRHGVIFGGVNQRPQVDM 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD  N+G + ++ I+  V+DEADRMLDMGFI  I+ I   +P  +
Sbjct: 121 LHKGIDILVATPGRLLDLMNQGHIHLDKIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM D +  ++ + L+NP RI +   SST + IE   +  + +  +K  LL  +
Sbjct: 181 QTLFFSATMPDTIISLTNSLLKNPVRISITPKSSTVDAIEQ--MVYFVEKKEKSLLLVSI 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ  +  ++ ++F   K N   +   L K G    AIHGN  Q +R   L NFK G  ++
Sbjct: 239 LQKSED-QSVLVFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQLALGNFKSGKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A T  ++E+ K ++
Sbjct: 298 MVATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQEERKLVN 357

Query: 359 AIEKLIEKKVD 369
            I+KL  KK++
Sbjct: 358 DIQKLTGKKLN 368


>gi|41408619|ref|NP_961455.1| DeaD [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41396977|gb|AAS04838.1| DeaD [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 566

 Score =  285 bits (730), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 146/361 (40%), Positives = 220/361 (60%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL + P V+ A+ D GY  PT IQ  TIP ++   DV G+AQTGTGKTA+F +P+L+ 
Sbjct: 15  FADLQIHPSVLRAIADVGYETPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSK 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++   A     + L+L PTRELA QVA+ F +YG +   + V  + GG  +  Q   L+R
Sbjct: 75  ID---AASTATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYAVQLAGLKR 131

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  RG L +++++ LV+DEAD ML MGF   +  I S  P  +Q  
Sbjct: 132 GAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVA 191

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K++  +L +P  +     ++TAE I   ++       +K   L ++L+ 
Sbjct: 192 LFSATMPPAIRKLTAKYLHDPLEVSTKAKTTTAENISQRYIQVAG--PRKMDALTRVLEV 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  I+F   K+    +   L  +GFS  AI+G+I Q  R + ++  K+G I ++VA
Sbjct: 250 E-PFEAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  +   + AIE
Sbjct: 309 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLKAIE 368

Query: 362 K 362
           K
Sbjct: 369 K 369


>gi|118443840|ref|YP_877556.1| ATP-dependent RNA helicase [Clostridium novyi NT]
 gi|118134296|gb|ABK61340.1| ATP-dependent RNA helicase [Clostridium novyi NT]
          Length = 476

 Score =  285 bits (730), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 139/364 (38%), Positives = 232/364 (63%), Gaps = 6/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+D  LS +++  +   GY  PT +Q KTIPLVLQ  D+   +QTG+GKTASF +P+ 
Sbjct: 1   MNFSDFKLSSEILKTIKMLGYKNPTEVQEKTIPLVLQGKDIIVKSQTGSGKTASFGIPLC 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK +   + P+ LIL PTRELA Q+ ++    G+   +    + G  P   Q  +L+
Sbjct: 61  ---EKVKLENKKPQALILTPTRELAVQIKEDISNIGRFKKVKCTAVYGKEPISIQKNQLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR  DH  +G L +++I+ L+IDEAD+ML+MGFI  +++I   +   R T
Sbjct: 118 QRVHIVVGTPGRTFDHIQKGNLDLSDIKYLIIDEADKMLNMGFINQVEDIIKEITNDRIT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ + ++K+ + ++ +P++IE++  + T + IE  +      +SK+   L +++ 
Sbjct: 178 MLFSATLEERIEKLCKRYMNHPEKIEISKKNVTTDIIEQEYYK--VNHSKRFNTLTKVIY 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + IIFCN K  V N+ + ++ QGF+  A+HG +DQ+ R+  +++FK G  Q +V
Sbjct: 236 AE-VPDSAIIFCNTKVEVGNVANKMKNQGFNAKALHGGMDQKDRLYTINDFKRGKFQFLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HV N++VP   E+Y+HRIGRTGRAG  GK+ T V+  + +  + I
Sbjct: 295 ATDVAARGIDVEEITHVINYEVPVEKESYVHRIGRTGRAGHKGKSITFVSDYEKRMFNEI 354

Query: 361 EKLI 364
           E+ I
Sbjct: 355 EEYI 358


>gi|226307581|ref|YP_002767541.1| ATP-dependent RNA helicase DeaD [Rhodococcus erythropolis PR4]
 gi|229493790|ref|ZP_04387568.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121]
 gi|226186698|dbj|BAH34802.1| probable ATP-dependent RNA helicase DeaD [Rhodococcus erythropolis
           PR4]
 gi|229319289|gb|EEN85132.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121]
          Length = 591

 Score =  285 bits (730), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 149/361 (41%), Positives = 221/361 (61%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +  +V+ A+ D GY  P+PIQ  TIP +L+  DV G+AQTGTGKTA+F +P+L+ 
Sbjct: 13  FADLDIDDRVLKALSDVGYESPSPIQAATIPPLLEGKDVVGLAQTGTGKTAAFAVPVLSR 72

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     ++  + L+L PTRELA QVA+ F KY  +   L V  + GG  +  Q   L R
Sbjct: 73  IDTS---IKQTQALVLAPTRELALQVAEAFGKYSAHIPGLNVLPIYGGQSYGVQLSGLRR 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  +G L + N++ LV+DEAD ML MGF   ++ I    P  +Q  
Sbjct: 130 GAHVVVGTPGRVIDHLEKGTLDLTNLKYLVLDEADEMLKMGFQEDVERILRDTPGDKQVA 189

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++S+ +L NP  I V + +STA  I   ++    Q  +K   L ++L+ 
Sbjct: 190 LFSATMPGSIRRISKQYLNNPVEITVKSKTSTASNITQRYIQVAHQ--RKLDALTRVLEV 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  IIF   K+   +L   L  +G S  AI+G+I Q  R + +   K G + ++VA
Sbjct: 248 E-AFEAMIIFVRTKQATEDLAEKLRARGHSAAAINGDIVQAQRERTIGQLKNGALDILVA 306

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   VA  +   + +IE
Sbjct: 307 TDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRQGDALLFVAPRERHLLKSIE 366

Query: 362 K 362
           K
Sbjct: 367 K 367


>gi|156973702|ref|YP_001444609.1| hypothetical protein VIBHAR_01406 [Vibrio harveyi ATCC BAA-1116]
 gi|156525296|gb|ABU70382.1| hypothetical protein VIBHAR_01406 [Vibrio harveyi ATCC BAA-1116]
          Length = 411

 Score =  285 bits (730), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 151/362 (41%), Positives = 220/362 (60%), Gaps = 4/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV   GY KPT IQ K IP+VL   ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSAPITDAVKALGYEKPTSIQQKAIPIVLSGRNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G   R +  R +IL PTRELA QV  + E YGKN  L    + GG+ +  Q + L
Sbjct: 61  EKLSQGETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVDYAPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR++D + +  +  + +E+LV+DEAD+MLDMGFI  I  I   +P   Q
Sbjct: 121 IEGVDIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIVDCMPEDIQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT+++ ++ +++N + +P+ I +   S++   I+     T      K +LL  +L
Sbjct: 181 SLLFSATLSNPVRDLAKNAIVDPEEISIAKHSASKSNIKQWI--TTVDKDMKSSLLSHML 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     ++F   K     L   LEK+G    A H   +QR R +++  FK G IQ +
Sbjct: 239 NEND-WSQVLVFIETKHGAAKLVTQLEKRGIVAEAFHSGRNQRVRQELIEQFKAGEIQYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI ++  V N+D+P  A+ Y+HRIGRTGRAG  G+A +LV+K+D K++  
Sbjct: 298 VATGVAARGIDIDNLPVVINYDLPYPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCM 357

Query: 360 IE 361
           IE
Sbjct: 358 IE 359


>gi|154508882|ref|ZP_02044524.1| hypothetical protein ACTODO_01393 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798516|gb|EDN80936.1| hypothetical protein ACTODO_01393 [Actinomyces odontolyticus ATCC
           17982]
          Length = 722

 Score =  285 bits (730), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 151/370 (40%), Positives = 217/370 (58%), Gaps = 14/370 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL  +++ AV D G+  PTPIQ   IP +L+  DV GIAQTGTGKTA+F LP+L I
Sbjct: 47  FASLGLPEEILAAVTDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLLAI 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121
           ++   A  R  + L+L PTRELA Q A   E +  +   L V  + GG P+  Q   L+R
Sbjct: 107 VD---ADERNVQALVLAPTRELAMQSAQAIEDFAARTARLDVVPVYGGSPYGPQIGALKR 163

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++D   +G L ++++ +LV+DEAD ML MGF   ++ I S  P  R T 
Sbjct: 164 GAQVVVGTPGRVIDLIEKGALDLSHVRMLVLDEADEMLRMGFAEDVETIASSAPDDRLTA 223

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL-- 239
           LFSATM   ++KV+   L++P ++ V+T SST +TI   +      Y  K   L ++L  
Sbjct: 224 LFSATMPAAIEKVAREHLKDPVKVAVSTESSTVDTIHQTYAVV--PYKHKIGALSRVLAT 281

Query: 240 ------QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                 + Q+     I+F   + +V  +   L  +GF    I G++ Q  R +++   K 
Sbjct: 282 RAQHIKEGQEEADAAIVFVRTRADVEEVSLELSSRGFRAAGISGDVAQTERERMVERLKN 341

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G++ ++VA+D+AARGLD+  +  V NFDVP   E Y+HRIGRTGRAGR G+A T     +
Sbjct: 342 GSLDVLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTGRAGREGRALTFFTPRE 401

Query: 354 IKHIDAIEKL 363
              +  IEKL
Sbjct: 402 HGRLRRIEKL 411


>gi|127511883|ref|YP_001093080.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126637178|gb|ABO22821.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 432

 Score =  285 bits (730), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 151/370 (40%), Positives = 228/370 (61%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P+++ A+ + GY K TPIQ + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFAPEILHAISECGYQKMTPIQKEAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +    +  +    R LIL PTREL AQVADN ++Y +   ++V  + GG+  + Q  K
Sbjct: 61  QKMFDSPSDTQRSNTRALILAPTRELVAQVADNIKQYSRYLPISVLTVYGGVKMDTQAAK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +++GAD+++ TPGR+L+H     L ++N++ LV+DEADRMLDMGFI  IQ I   V   R
Sbjct: 121 VKKGADIIVATPGRLLEHLQACNLNLSNVDFLVLDEADRMLDMGFITDIQKILQQVNRDR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  +++++   L  PK I V+  ++TA T+    V    +  +K  LL +L
Sbjct: 181 QNLLFSATFSSAVKQLANEMLVKPKLIAVDKQNTTAVTVSQ--VVYPVEQRRKRELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F   ++    L   L   G     +H    Q +R + L  FKEG ++ 
Sbjct: 239 I-GKKNWQQVLVFTATREAADVLVKELNLDGIPSAVVHSEKAQGNRRRALREFKEGKVRA 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDIP++ +V NFD+P  AE+Y+HRIGRTGRAGR G A +LV++E+ + + 
Sbjct: 298 LVATEVAARGLDIPELEYVVNFDLPFLAEDYVHRIGRTGRAGRTGVAISLVSREEERTLA 357

Query: 359 AIEKLIEKKV 368
            IEKLI  K+
Sbjct: 358 DIEKLIGNKI 367


>gi|258511452|ref|YP_003184886.1| DEAD/DEAH box helicase domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478178|gb|ACV58497.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 541

 Score =  285 bits (730), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 149/366 (40%), Positives = 232/366 (63%), Gaps = 7/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+ +V+ A+ D G+ +P+PIQ   IP+VL+  DV G AQTGTGKTA+F +P++  
Sbjct: 19  FESFGLNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIPLV-- 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E+     R+ + ++L PTRELA QVA    K  K   +    + GG     Q + L++G
Sbjct: 77  -ERVSTEPRV-QAIVLTPTRELAIQVAGEIRKIAKYKRVRSVPIYGGQSIVHQIRALKQG 134

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++I TPGR+LDH +RG L ++++ ++V+DEAD MLDMGFI  I+ I    P  RQT+L
Sbjct: 135 VQIVIGTPGRVLDHIHRGTLSLSDVRMVVLDEADEMLDMGFIDDIEAILRETPSDRQTML 194

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT  +E+++++  ++++P+ I VN    T   I+        +   K   L +++ S+
Sbjct: 195 FSATFPNEVKRLALRYMRDPQHITVNRGEVTVPQIDQVCYKVLER--NKLDSLCRIVDSE 252

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D ++ GIIFC  K+ V +L  +L  +G+    +HG++ Q  R +++  F++  I+L+VA+
Sbjct: 253 D-IQLGIIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIELLVAT 311

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+ DV HV N+DVP   E+Y+HRIGRTGRAG+ G A TLV   + K +  IE+
Sbjct: 312 DVAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKLLKQIER 371

Query: 363 LIEKKV 368
            I++K+
Sbjct: 372 EIKQKI 377


>gi|262173979|ref|ZP_06041656.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
 gi|261891337|gb|EEY37324.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
          Length = 422

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 151/379 (39%), Positives = 231/379 (60%), Gaps = 9/379 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGL P ++  + D G V PTPIQ + IP VLQ  DV   AQTGTGKTA+F LP++
Sbjct: 6   ITFSQLGLDPHLLNTLSDLGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65

Query: 61  T-ILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
              +E+   R    +  R L+L PTRELA QV D+ + Y K   L +  + GG   + Q 
Sbjct: 66  QRFIEQPWVREENSKEIRALVLVPTRELAQQVLDSMQAYAKGTELKIVAVYGGTSMKVQL 125

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G D+LI TPGR+LDH +   L +  +E+LV+DEADRMLDMGF+P +Q +   +  
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSAT   +++ V+   +++P  ++V   +STAET++           +K  LL 
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPVEVQVTPSNSTAETVQQMVYPV--DKKRKRELLS 243

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L+ S++  +  ++F   ++    L   L+  G    +I+G+  Q +R K L +FK G +
Sbjct: 244 YLIGSKN-WQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKVGKV 302

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L++ ++   
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEEPQ 362

Query: 357 IDAIEKLIEKKV--DWLNG 373
           ++AIE+L+  ++  +WL G
Sbjct: 363 LEAIERLLNTRLPQEWLKG 381


>gi|254819463|ref|ZP_05224464.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium intracellulare ATCC 13950]
          Length = 567

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 146/361 (40%), Positives = 219/361 (60%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL + P V+ AV D GY  PT IQ  TIP ++   DV G+AQTGTGKTA+F +P+L+ 
Sbjct: 15  FADLQIHPSVLRAVADVGYESPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSK 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++         + L+L PTRELA QVA+ F +YG +   + V  + GG  +  Q   L R
Sbjct: 75  ID---VTSTATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYSVQLAGLRR 131

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  RG L +++++ LV+DEAD ML MGF   +  I S  P  +Q  
Sbjct: 132 GAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVA 191

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K++  +L +P  +     ++TAE I   ++       +K   L ++L+ 
Sbjct: 192 LFSATMPPAIRKLTTKYLHDPLEVSTKAKTATAENISQRYIQVAG--PRKMDALTRVLEV 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  I+F   K+    +   L  +GFS  AI+G+I Q  R + ++  K+G+I ++VA
Sbjct: 250 E-PFEAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQGQRERTVAALKDGSIDILVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  +   + AIE
Sbjct: 309 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLKAIE 368

Query: 362 K 362
           K
Sbjct: 369 K 369


>gi|15641418|ref|NP_231050.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121591273|ref|ZP_01678569.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121727543|ref|ZP_01680655.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
 gi|147674915|ref|YP_001216964.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|153817750|ref|ZP_01970417.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
 gi|153821347|ref|ZP_01974014.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
 gi|227081578|ref|YP_002810129.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
 gi|229505017|ref|ZP_04394527.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229511313|ref|ZP_04400792.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229518431|ref|ZP_04407875.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
 gi|229608021|ref|YP_002878669.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254848525|ref|ZP_05237875.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
 gi|255745787|ref|ZP_05419735.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|262158933|ref|ZP_06030045.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
 gi|262169296|ref|ZP_06036988.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|298498514|ref|ZP_07008321.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
 gi|9655903|gb|AAF94564.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121546878|gb|EAX57035.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121630127|gb|EAX62530.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
 gi|126511688|gb|EAZ74282.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
 gi|126521165|gb|EAZ78388.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
 gi|146316798|gb|ABQ21337.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|227009466|gb|ACP05678.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
 gi|227013322|gb|ACP09532.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|229345146|gb|EEO10120.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
 gi|229351278|gb|EEO16219.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229357240|gb|EEO22157.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229370676|gb|ACQ61099.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254844230|gb|EET22644.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
 gi|255736862|gb|EET92259.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|262022109|gb|EEY40818.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|262029118|gb|EEY47770.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
 gi|297542847|gb|EFH78897.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
          Length = 397

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 155/373 (41%), Positives = 224/373 (60%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V  V   GY KPT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YGK+  L    + GG+  +AQ ++L
Sbjct: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  +++P  I +    ++   I    +        K ALL  L+
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV--DKDTKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 239 NEQQ-WDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357

Query: 360 IEK----LIEKKV 368
           IE     LIE++V
Sbjct: 358 IESRLGHLIERRV 370


>gi|229521507|ref|ZP_04410926.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|229341605|gb|EEO06608.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
          Length = 397

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 155/373 (41%), Positives = 224/373 (60%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V  V   GY KPT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YGK+  L    + GG+  +AQ ++L
Sbjct: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  +++P  I +    ++   I    +        K ALL  L+
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV--DKDTKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 239 NEQQ-WDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357

Query: 360 IEK----LIEKKV 368
           IE     LIE++V
Sbjct: 358 IESRLGHLIERRV 370


>gi|116693760|ref|YP_839293.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|116651760|gb|ABK12400.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           HI2424]
          Length = 507

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 156/368 (42%), Positives = 224/368 (60%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  +    Y  PTP+Q K IP+VL   DV   AQTGTGKTA F LP+L
Sbjct: 24  MSFASLGLIEPLLRNLQGLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLL 83

Query: 61  T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +++ G A      R L+L PTRELA QV  +F +YGK  +L      GG+    Q  K
Sbjct: 84  QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMK 143

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 144 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKR 203

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++K++   L++P  I V+ P++TA  I+   V        K  L   L
Sbjct: 204 QTLLFSATFSDEIRKMAAGILRSPVDISVSPPNATASKIKQWVVPV--DKRNKPDLFMHL 261

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +Q+  ++ ++F   +  V  L   LEK G++V  IHG+  Q +R++ L  FK G +Q+
Sbjct: 262 V-AQNRWEHALVFVKTRNGVDYLALMLEKTGYAVDTIHGDKPQPARLRALERFKTGEVQM 320

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 321 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 380

Query: 359 AIEKLIEK 366
           AIE LI +
Sbjct: 381 AIEALIRQ 388


>gi|170736938|ref|YP_001778198.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169819126|gb|ACA93708.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 483

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 156/368 (42%), Positives = 224/368 (60%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  +    Y  PTP+Q K IP+VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIEPLLRNLQRLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLL 60

Query: 61  T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +++ G A      R L+L PTRELA QV  +F +YGK  +L      GG+    Q  K
Sbjct: 61  QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++K++   L++P  I V+ P++TA  I+   V        K  L   L
Sbjct: 181 QTLLFSATFSDEIRKMAAGILRSPVDISVSPPNATASKIKQWVVPV--DKRNKPDLFMHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +Q+  ++ ++F   +  V  L   LEK G++V  IHG+  Q +R++ L  FK G +Q+
Sbjct: 239 V-AQNRWEHALVFVKTRNGVDYLALMLEKAGYAVDTIHGDKPQPARLRALERFKTGEVQM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEK 366
           AIE LI +
Sbjct: 358 AIEALIRQ 365


>gi|259907048|ref|YP_002647404.1| ATP-dependent RNA helicase DeaD [Erwinia pyrifoliae Ep1/96]
 gi|224962670|emb|CAX54125.1| Cold-shock DEAD-box protein A [Erwinia pyrifoliae Ep1/96]
 gi|283476844|emb|CAY72682.1| Cold-shock DEAD box protein A [Erwinia pyrifoliae DSM 12163]
          Length = 638

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 145/377 (38%), Positives = 237/377 (62%), Gaps = 11/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL+  ++ ++   GYVKP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FAELGLNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     V+ P+ L+L PTRELA QVA+    + K+   L V  L GG  ++ Q + L +
Sbjct: 68  IDPT---VKAPQILVLAPTRELAVQVAEAVTDFSKHMRGLNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++ F+++P+ + + +  +T   I   +   +  Y +K   L + L++
Sbjct: 185 LFSATMPEAIRRITKRFMKDPQEVRIQSSLTTRPDISQSY---WTAYGRKTDALTRFLEA 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 242 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 301 TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 360

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 361 RTMKLTIPEVELPNAEL 377


>gi|329945603|ref|ZP_08293336.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528606|gb|EGF55571.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 852

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 152/394 (38%), Positives = 234/394 (59%), Gaps = 16/394 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ AV D G+V PT IQ + IP++L   DV G+AQTGTGKTA+F LP+L  
Sbjct: 149 FADLGLPSDLLKAVTDMGFVSPTAIQKEAIPVLLSGRDVVGVAQTGTGKTAAFGLPLLDA 208

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNF-EKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++   +R  + + L+L PTRELA Q A+   +   ++  L V  + GG P+  Q   L+ 
Sbjct: 209 VD---SRDSVVQALVLAPTRELALQSAEAITDMAARSRGLDVVAVYGGAPYGPQIGALKG 265

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++D  ++G L ++++   V+DEAD ML MGF   ++ I   +P  R+T 
Sbjct: 266 GAQVVVGTPGRVIDLIDKGALQLDDVRYFVLDEADEMLRMGFAEDVETIAESLPTERRTA 325

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +Q V+   L  P ++EV+ P+ST  T+   +      +  K   + ++L  
Sbjct: 326 LFSATMPPAIQAVARQHLHEPVQVEVSRPASTVATVHQTYAVV--PFRHKIGAVSRVLAV 383

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D  +  I+F   K    ++   L  +G    AI G++ QR R +++   + GT+ ++VA
Sbjct: 384 TDA-EAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVLVA 442

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V NFDVP  AE Y+HRIGRTGRAGRHG+A T +  ++   +  IE
Sbjct: 443 TDVAARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQIE 502

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           +L   +++ +     +L  P    D+++H  ARK
Sbjct: 503 RLTGSRLEEI-----TLPSP---ADVSEH-RARK 527


>gi|293192664|ref|ZP_06609618.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
 gi|292820171|gb|EFF79168.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
          Length = 722

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 151/370 (40%), Positives = 217/370 (58%), Gaps = 14/370 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL  +++ AV D G+  PTPIQ   IP +L+  DV GIAQTGTGKTA+F LP+L I
Sbjct: 47  FASLGLPEEILAAVTDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLLAI 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121
           ++   A  R  + L+L PTRELA Q A   E +  +   L V  + GG P+  Q   L+R
Sbjct: 107 VD---ADERNVQALVLAPTRELAMQSAQAIEDFAARTARLDVVPVYGGSPYGPQIGALKR 163

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++D   +G L ++++ +LV+DEAD ML MGF   ++ I S  P  R T 
Sbjct: 164 GAQVVVGTPGRVIDLIEKGALDLSHVRMLVLDEADEMLRMGFAEDVETIASSAPDDRLTA 223

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL-- 239
           LFSATM   ++KV+   L++P ++ V+T SST +TI   +      Y  K   L ++L  
Sbjct: 224 LFSATMPAAIEKVAREHLKDPVKVAVSTESSTVDTIHQTYAVV--PYKHKIGALSRVLAT 281

Query: 240 ------QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                 + Q+     I+F   + +V  +   L  +GF    I G++ Q  R +++   K 
Sbjct: 282 RAQHIKEGQEEADAAIVFVRTRADVEEVSLELSSRGFRAAGISGDVAQTERERMVERLKN 341

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G++ ++VA+D+AARGLD+  +  V NFDVP   E Y+HRIGRTGRAGR G+A T     +
Sbjct: 342 GSLDVLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTGRAGREGRALTFFTPRE 401

Query: 354 IKHIDAIEKL 363
              +  IEKL
Sbjct: 402 HGRLRRIEKL 411


>gi|120600329|ref|YP_964903.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|146291742|ref|YP_001182166.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|120560422|gb|ABM26349.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145563432|gb|ABP74367.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 640

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 147/367 (40%), Positives = 230/367 (62%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ A+ + GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L  
Sbjct: 8   FRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           +         P+ L+L PTRELA QVA+ F  Y K   N  V  + GG   + Q   L+R
Sbjct: 68  VTSQTT----PQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L +++++ LV+DEAD ML MGFI  I+ I    P  RQ  
Sbjct: 124 GPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWILEHTPSERQLA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +++++V+   L++P  + + +  +T E+IE  FV   +Q++K  AL++ +L+ 
Sbjct: 184 LFSATMPEQIKRVANQHLRSPVHVRIESSQTTVESIEQRFVQV-SQHNKLEALVR-VLEV 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++T +  IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++A
Sbjct: 242 ENT-EGVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +GHV N+D+P  AE Y+HRIGRTGRAGR G A   V   +++ +  IE
Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360

Query: 362 KLIEKKV 368
           +    ++
Sbjct: 361 RSTNSRI 367


>gi|294634522|ref|ZP_06713057.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda ATCC 23685]
 gi|291092036|gb|EFE24597.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda ATCC 23685]
          Length = 643

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 144/377 (38%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  ++ A+ D GY KP+PIQ   IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 13  FADLGLAAPIIEALNDLGYEKPSPIQAACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNN 72

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           ++     ++ P+ L+L PTRELA QVA+    + K+ + + V  L GG  ++ Q + L +
Sbjct: 73  IDPS---LKAPQVLVLAPTRELAVQVAEAMTDFSKHLHGINVVALYGGQRYDVQLRALRQ 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L + ++  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 130 GPQIVVGTPGRLLDHLKRGTLSLASLRGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTA 189

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F+  P+ + + +  +T   I   +   Y    +K   L + L++
Sbjct: 190 LFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVYGM--RKNEALVRFLEA 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G+S  A++G+++Q  R + L   K+G + +++A
Sbjct: 248 ED-FDAAIIFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDILIA 306

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 307 TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRNIE 366

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 367 RTMKLTIPEVELPNAEL 383


>gi|183179390|ref|ZP_02957601.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
 gi|183012801|gb|EDT88101.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
          Length = 397

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 155/373 (41%), Positives = 224/373 (60%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V  V   GY KPT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YGK+  L    + GG+  +AQ ++L
Sbjct: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  +++P  I +    ++   I    +        K ALL  L+
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV--DKDTKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 239 NEQQ-WDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357

Query: 360 IEK----LIEKKV 368
           IE     LIE++V
Sbjct: 358 IESRLGHLIERRV 370


>gi|283779400|ref|YP_003370155.1| DEAD/DEAH box helicase domain-containing protein [Pirellula staleyi
           DSM 6068]
 gi|283437853|gb|ADB16295.1| DEAD/DEAH box helicase domain protein [Pirellula staleyi DSM 6068]
          Length = 458

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 146/364 (40%), Positives = 225/364 (61%), Gaps = 4/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA + LS +++ A+  AGY  PTPIQ   IP  L+  DV G A+TGTGKTASFV+P+L +
Sbjct: 14  FASMDLSDQMMAALEKAGYEYPTPIQAGLIPRALEGVDVVGQARTGTGKTASFVIPILEL 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  R     P+ LIL PTRELA QV D   K  +   +  A + GG P ++Q  KL++G
Sbjct: 74  LDIERG-APTPQALILVPTRELAVQVRDEVVKLSEGLKINCAAVYGGKPIKSQVDKLKKG 132

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+LDH  RG +   +IE +V+DEADRMLD+GF P I+ I    P  RQTLL
Sbjct: 133 CHVVVGTPGRVLDHIARGTIDFTHIECVVLDEADRMLDIGFRPDIERILKRCPRERQTLL 192

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+   + K+++ ++  P+ +  +    + +TIE  +     ++ +K  LL +LL  +
Sbjct: 193 LSATVPPPIAKLAQRYMYEPEMLNFSPADVSVDTIEQKYFTV--EHDRKFDLLMKLLLRE 250

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  K  I+FC  K+    +   L K+  +  AIHG++ Q  R ++++ F++G+++ +VA+
Sbjct: 251 EP-KQAIVFCRTKRGTDKVYQKLTKKLGNTAAIHGDLSQGQRDRVMAGFRDGSVRYLVAT 309

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+  RG+D+  V H+ NFD+P   ++Y+HR+GRTGR GR G A+T V  ++   +  IE+
Sbjct: 310 DVIGRGIDVSTVSHIVNFDIPVFCDDYVHRVGRTGRMGREGVAYTFVCPDEGHELTRIEE 369

Query: 363 LIEK 366
            I K
Sbjct: 370 RINK 373


>gi|257068572|ref|YP_003154827.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
 gi|256559390|gb|ACU85237.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
          Length = 669

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 143/365 (39%), Positives = 221/365 (60%), Gaps = 7/365 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   +  AV + G+  P+ IQ + IP +L+  DV G+AQTGTGKTA+F LP+L  
Sbjct: 86  FDDIALPAPLRRAVDELGFTTPSAIQAQAIPPLLEGRDVIGVAQTGTGKTAAFGLPLLAA 145

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++     +R  + L+L PTRELA QVAD    +  +   L V  L GG P+  Q + L R
Sbjct: 146 IDPS---LREVQALVLAPTRELAMQVADAIASFATSIGGLDVVALYGGSPYGPQERALAR 202

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  R  L ++ I + V+DEAD ML MGF   ++ I S  P TRQ  
Sbjct: 203 GAQVVVGTPGRVMDHMRRTNLRLDTIRVAVLDEADEMLRMGFAEDVEEILSHSPDTRQVA 262

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +Q+V++  +Q+P R+ V+  SST +++   +      +  +   L ++L +
Sbjct: 263 LFSATMPAAIQRVAQTHMQDPVRVSVSPQSSTVKSVHQTYAVV--PFRHRTGALARVLAT 320

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D  +  I+F   +     +  +L  +G    +I G++ Q+ R KI+   ++G++Q++VA
Sbjct: 321 SDA-EAAIVFVRTRAAAEEVGTALVGRGLIAASISGDVPQKEREKIVERLRDGSLQVLVA 379

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V NFDVP  AE+Y+HRIGRTGRAGR G+A T +   + + +  IE
Sbjct: 380 TDVAARGLDVERIGLVVNFDVPKEAESYVHRIGRTGRAGRSGEALTFIGPHERRALKNIE 439

Query: 362 KLIEK 366
           +  ++
Sbjct: 440 RATKQ 444


>gi|88802750|ref|ZP_01118277.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
 gi|88781608|gb|EAR12786.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
          Length = 411

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 158/408 (38%), Positives = 246/408 (60%), Gaps = 20/408 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+D   +  ++ AV +  +  P+ +Q + IPL+L++ +V   AQTGTGKTA+F LP++
Sbjct: 1   MQFSDFSFNKSILKAVAEERFQTPSLVQQEAIPLILEKKNVIVSAQTGTGKTAAFALPII 60

Query: 61  TIL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +L      EKG  +++   +LI+ PTRELA Q+ +NF+ + K  NL  + + GG+  E 
Sbjct: 61  QLLFDGQDAEKGEKKIK---SLIITPTRELAIQILENFKSFSKYSNLRASAVFGGVSLEP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L +G D+LI TPGR++D   +G + ++ IEI V+DEAD MLDMGFI  I+ I    
Sbjct: 118 QKEILSKGIDILIATPGRLIDLHTQGNIDLSAIEIFVLDEADLMLDMGFINDIKKIERFC 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  +QTLLFSATM +++ ++++  +++P  +E+N   +TA+ I       Y     K  L
Sbjct: 178 PKQKQTLLFSATMPEKIVELAKKVIKSPVVVEINPEETTAKNIGQLLY--YLPKKNKTDL 235

Query: 235 LQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
              LL++     NG  IIF   K  V  L  SL K G+ V +IHG+  Q  R K + +FK
Sbjct: 236 CLNLLKN---TINGKIIIFRRTKFGVDKLEESLTKNGYKVASIHGDKTQGIRNKAIEDFK 292

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
             T  +++A+D+A+RG+DI +V  + NFD+PN  E YIHRIGRTGRAG+ G AF+  + +
Sbjct: 293 NKTAHILIATDVASRGIDITNVDAIINFDIPNVPETYIHRIGRTGRAGKSGIAFSFCSPD 352

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI----DIAQHNHARKN 396
           +  +I  IE LIE+ +  +   L  ++ P +K      +++H   RK+
Sbjct: 353 ENAYIKLIETLIERPIKVITDHLYIISKPKQKRTQENTVSKHKKGRKS 400


>gi|153826995|ref|ZP_01979662.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
 gi|149739156|gb|EDM53442.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
          Length = 397

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 155/373 (41%), Positives = 224/373 (60%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V  V   GY KPT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YGK+  L    + GG+  +AQ ++L
Sbjct: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  +++P  I +    ++   I    +        K ALL  L+
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV--DKDTKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 239 NEQQ-WDQALIFIETKHGAAKLVSQLEKRGIYAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357

Query: 360 IEK----LIEKKV 368
           IE     LIE++V
Sbjct: 358 IESRLGHLIERRV 370


>gi|163789886|ref|ZP_02184322.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
 gi|159874826|gb|EDP68894.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
          Length = 527

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 150/381 (39%), Positives = 231/381 (60%), Gaps = 13/381 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+P+++ +V   G+ + TPIQ +TIPL L+  DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFSELGLAPELLKSVERLGFEEATPIQGQTIPLALEGKDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    L++ PTRELA Q  +   +  ++  + V ++ GG     Q + L+
Sbjct: 61  QKIDVNNRNVQ---GLVIAPTRELAIQTQEELFRLSRDKKVRVQVVYGGADISRQIRALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  L + ++E LV+DEAD ML+MGFI  I+ I   VP  RQT
Sbjct: 118 DAPHIVVGTPGRLLDHIKRKTLKLGHVETLVLDEADEMLNMGFIDDIETIIHEVPAERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F++ P+ +++   + +   IE  FV    +  +K  ++ +L  
Sbjct: 178 LLFSATMPPAIKRIGVRFMKEPEHVQIKATTMSDSLIEQFFV--RCKDFEKFDIMTRLFD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q T +  IIF   K+ V  L   LE +G+    IHG++ Q+ RM +L  FK G + ++V
Sbjct: 236 VQ-TPELTIIFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLKAFKTGKLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T +   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGVSVTFITPNEMGYLRVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPP 381
           E L +K        ++ L PP
Sbjct: 355 EDLTKKA-------MTPLRPP 368


>gi|107027528|ref|YP_625039.1| DEAD/DEAH box helicase-like [Burkholderia cenocepacia AU 1054]
 gi|105896902|gb|ABF80066.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
           1054]
          Length = 507

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 156/368 (42%), Positives = 223/368 (60%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  +    Y  PTP+Q K IP+VL   DV   AQTGTGKTA F LP+L
Sbjct: 24  MSFASLGLIEPLLRNLQGLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLL 83

Query: 61  T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +++ G A      R L+L PTRELA QV  +F +YGK  +L      GG+    Q  K
Sbjct: 84  QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMK 143

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 144 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKR 203

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++K++   L++P  I V+ P++TA  I+   V        K  L   L
Sbjct: 204 QTLLFSATFSDEIRKMAAGILRSPVDISVSPPNATASKIKQWVVPV--DKRNKPDLFMHL 261

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +Q+  +  ++F   +  V  L   LEK G++V  IHG+  Q +R++ L  FK G +Q+
Sbjct: 262 V-AQNRWERALVFVKTRNGVDYLALMLEKTGYAVDTIHGDKPQPARLRALERFKTGEVQM 320

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 321 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 380

Query: 359 AIEKLIEK 366
           AIE LI +
Sbjct: 381 AIEALIRQ 388


>gi|149192500|ref|ZP_01870684.1| RhlE [Vibrio shilonii AK1]
 gi|148833665|gb|EDL50718.1| RhlE [Vibrio shilonii AK1]
          Length = 397

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 148/362 (40%), Positives = 226/362 (62%), Gaps = 4/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ A+ + GY KPT IQ K IP+VL+  ++   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSKLGLSQPLLDAIKEVGYQKPTTIQTKAIPIVLKGSNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G+  R +  R +IL PTRELA QV  + E Y +  ++    + GG+ +  Q + L
Sbjct: 61  ERLSAGQTERKKRARAIILTPTRELALQVNQSIEAYAQFTSIKSMAMFGGVDYAPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR++D + +  +  + +E LV+DEAD+MLDMGFI  I  I + VP   Q
Sbjct: 121 IDGVDIVVATPGRLIDLYGQRAIHFDEVETLVLDEADKMLDMGFIEAINKIIARVPEDAQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT+++ ++ ++++ + NP+ I +   S++   I+   V        K +LL  LL
Sbjct: 181 SLLFSATLSNPVRDLAKSAIDNPEEIAITKHSASKSNIKQWIVTV--DKDMKSSLLSHLL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q Q+  K  +IF   K     L   LEK+G +  A H   +Q+ R +++ +FK G IQ +
Sbjct: 239 Q-QNQWKQALIFIETKHGAAKLVSQLEKRGIAAEAFHSGRNQKVRQQLIESFKAGEIQYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI ++  V N+D+P  A+ Y+HRIGRTGRA   G+A +LV+K++ K++  
Sbjct: 298 VATGVAARGIDIENLPVVINYDLPYPADEYVHRIGRTGRADAAGEALSLVSKDNFKNLCM 357

Query: 360 IE 361
           IE
Sbjct: 358 IE 359


>gi|296387524|ref|ZP_06876999.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 449

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 150/366 (40%), Positives = 225/366 (61%), Gaps = 5/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   G+  PTPIQ + IP  L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               LE  +      R L+L PTRELA QV  +   YG++  L  A+  GG+    Q  K
Sbjct: 61  QRLTLEGPQVAANSVRALVLVPTRELAEQVHASIRDYGQHLPLRTAVAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD + +  +    ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGGDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D ++ ++   L++P  IEV+  ++ A+++    V       +K  L   L
Sbjct: 181 QTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPV--DKKRKAELFCHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ+ +  +  ++F   +K+V  L   L++QG +  +IHG+  Q +R++ L  FK G + L
Sbjct: 239 LQT-NRWRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDL 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLA 357

Query: 359 AIEKLI 364
           AIE LI
Sbjct: 358 AIETLI 363


>gi|293375719|ref|ZP_06621991.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
           PC909]
 gi|325838961|ref|ZP_08166744.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
 gi|292645662|gb|EFF63700.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
           PC909]
 gi|325490616|gb|EGC92928.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
          Length = 538

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 144/372 (38%), Positives = 237/372 (63%), Gaps = 11/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL LSP  + A+ + GYVKP+PIQ + IP+VL   D+ G AQTGTGKTA+F+LP   I
Sbjct: 6   FKDLALSPSTLKAIEEIGYVKPSPIQAEAIPVVLAGKDIIGQAQTGTGKTAAFMLP---I 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           LEK   + +  + L+L PTRELA QV +  +K+ +N  ++ +  + GG  ++ Q + L++
Sbjct: 63  LEKIDPKNKNVQALVLCPTRELAVQVHEESKKFSRNNRDVHILSIYGGQSYDPQIRALKK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH  RG L + N+++LV+DEAD ML+MGF   I+ I    P +RQT+
Sbjct: 123 GVQIVVGTPGRVMDHMRRGTLKLENLKMLVLDEADEMLNMGFKDDIEEILEKTPESRQTV 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E+  +++ + +NP+ ++V +   + + I+  +V       K+   +Q +++ 
Sbjct: 183 MFSATMAREIMNIAKTYQKNPEVVKVVSEELSNKKIDQYYVEV-----KRQDRVQAMIRC 237

Query: 242 QDTM--KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            D M   + I+F N K+ V  L   L+++G+    +HG++ Q  R +++++F+   + ++
Sbjct: 238 IDMMGLTSSIVFTNTKREVDELVSKLQEEGYVTEGLHGDLKQAQRDRVMNSFRRKNVNIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V  VFN+D+P   ENY+HRIGRTGRAG  G + T V  +D+  I  
Sbjct: 298 VATDIAARGIDVSNVEAVFNYDIPLNEENYVHRIGRTGRAGMTGLSITFVFGKDMFRIRR 357

Query: 360 IEKLIEKKVDWL 371
           IE   + K+  +
Sbjct: 358 IEDYTKTKMSKM 369


>gi|332523459|ref|ZP_08399711.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314723|gb|EGJ27708.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 538

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 147/371 (39%), Positives = 231/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               K R    + + L++ PTRELA Q  +   ++G++  + V  + GG   + Q K L+
Sbjct: 61  N---KIRTDENIIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGASIDKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L ++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F++NP+ +++     T   +E  +V    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPAPIKQIGVKFMKNPEHVQIKNKELTNVNVEQYYVRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   + ++V
Sbjct: 236 V-DQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI +V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISNVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKQMKPL 365


>gi|227503818|ref|ZP_03933867.1| superfamily II helicase [Corynebacterium striatum ATCC 6940]
 gi|227199642|gb|EEI79690.1| superfamily II helicase [Corynebacterium striatum ATCC 6940]
          Length = 678

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 147/385 (38%), Positives = 237/385 (61%), Gaps = 13/385 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL  +V  AV   G+ +P+PIQ +TIP++++  DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 56  FATLGLPEEVQQAVAKVGFTQPSPIQEQTIPILMEGRDVVGLAQTGTGKTAAFALPVLSQ 115

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++     VR P+ L+L PTRELA QVAD+F+ +  +   + V  + GG  +  Q   L R
Sbjct: 116 VDP---EVRHPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRR 172

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  +G L ++ +  LV+DEAD ML+MGF   ++ I    P  +Q  
Sbjct: 173 GAQIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILEDTPEEKQVA 232

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ- 240
           LFSATM + ++++S+ +L +P  + V +   T + I   ++ T   + +K     ++L+ 
Sbjct: 233 LFSATMPNSIRRLSKQYLNDPAEVTVKSERRTNDNITQRYLLT--PHRQKMDAFTRILEV 290

Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D +   I+FC  K     +  SL   G++  AI+G+I Q+ R + +   K+G + ++
Sbjct: 291 IEYDAI---IVFCRTKHETEEVADSLRDAGYNAAAINGDIAQQQRERTVDQLKDGRLDIL 347

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +
Sbjct: 348 VATDVAARGLDVDRITHVVNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRS 407

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE++   +++ +  DL S +   EK
Sbjct: 408 IERVTNARLEEM--DLPSADAVNEK 430


>gi|254249566|ref|ZP_04942886.1| Helicase [Burkholderia cenocepacia PC184]
 gi|124876067|gb|EAY66057.1| Helicase [Burkholderia cenocepacia PC184]
          Length = 505

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 156/368 (42%), Positives = 224/368 (60%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  +    Y  PTP+Q K IP+VL   DV   AQTGTGKTA F LP+L
Sbjct: 23  MSFASLGLIEPLLRNLQRLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLL 82

Query: 61  T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +++ G A      R L+L PTRELA QV  +F +YGK  +L      GG+    Q  K
Sbjct: 83  QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMK 142

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 143 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKR 202

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++K++   L++P  I V+ P++TA  I+   V        K  L   L
Sbjct: 203 QTLLFSATFSDEIRKMAAGILRSPVDISVSPPNATASKIKQWVVPV--DKRNKPDLFMHL 260

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +Q+  ++ ++F   +  V  L   LEK G++V  IHG+  Q +R++ L  FK G +Q+
Sbjct: 261 V-AQNRWEHALVFVKTRNGVDYLALMLEKAGYAVDTIHGDKPQPARLRALERFKTGEVQM 319

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 320 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 379

Query: 359 AIEKLIEK 366
           AIE LI +
Sbjct: 380 AIEALIRQ 387


>gi|325279879|ref|YP_004252421.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324311688|gb|ADY32241.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
           20712]
          Length = 374

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 152/370 (41%), Positives = 231/370 (62%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   ++ A+ + GY +PTPIQ + IP+ L R D+ G AQTGTGKTASF +P++
Sbjct: 1   MTFKELNIIQPILKAIEEKGYNRPTPIQQQAIPVALSRKDILGCAQTGTGKTASFAIPII 60

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L+      + +  + LIL PTRELA Q+++  ++Y +   +   ++ GG+    Q   
Sbjct: 61  QLLQADPIITKRKGVKALILTPTRELALQISECLDEYARYTPVRHGVMFGGVNQRPQVTM 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G D+L+ TPGR+LD  ++G L ++ ++  V+DEADRMLDMGFI  I+ I   +P  +
Sbjct: 121 LQKGIDILVATPGRLLDLMSQGFLSLDQVKYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM D +  ++   L+NP +I +   S T + IE  FV  + + ++K  LL  L
Sbjct: 181 QTLFFSATMPDSIVTLASALLKNPVKITITPESPTVDAIEQ-FV-YFVEKAEKGRLLISL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+  +  ++ ++F   K N   +   L K G    AIHGN  Q +R   L NFK G  ++
Sbjct: 239 LRKAEN-QSVLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G AFT  ++E+ K +D
Sbjct: 298 MVATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGTAFTFCSQEERKLVD 357

Query: 359 AIEKLIEKKV 368
            I+KL  KK+
Sbjct: 358 NIQKLTGKKL 367


>gi|78486348|ref|YP_392273.1| DEAD/DEAH box helicase-like [Thiomicrospira crunogena XCL-2]
 gi|78364634|gb|ABB42599.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
          Length = 574

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 231/369 (62%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DLGLS  ++  + + GY  P+PIQ + IP++L+  D+ G+AQTGTGKTA+F LP+L
Sbjct: 5   IKFSDLGLSAPILKTLEEIGYETPSPIQEQAIPVLLKGGDILGMAQTGTGKTAAFALPIL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           + ++    + + P+ L+L PTRELA QVA+ F+ + +    L V  + GG  +  Q + L
Sbjct: 65  SKID---LKQKDPQVLVLAPTRELAIQVAEAFQTFSRGVKGLHVLPIYGGSEYGTQIRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGR++DH  +G L ++ ++++++DEAD ML MGFI  ++ I    P TRQ
Sbjct: 122 KRGVHVVVGTPGRVMDHIKKGTLKLDTLKVMILDEADEMLRMGFIDDVEWILKHTPDTRQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  E+ +++  +LQ+P  + +   ++TA  IE  +      +  K   L ++L
Sbjct: 182 IALFSATMPKEVHRIANTYLQDPTEVIIKQKAATASLIEQKYWLVSGLH--KLDALTRIL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +++ T    IIF   K   V L   LE +G++  A++G++ Q  R + +   K+G + ++
Sbjct: 240 EAE-TFDGIIIFVRTKTATVELAEKLEARGYAAAALNGDVAQNQRERTVDQLKKGKLDIL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+ ARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A   VA  + + + +
Sbjct: 299 IATDVVARGLDVERISHVINYDIPYDNESYVHRIGRTGRAGRSGTAILFVAPRERRLLRS 358

Query: 360 IEKLIEKKV 368
           IE   +KK+
Sbjct: 359 IEASTKKKI 367


>gi|332532397|ref|ZP_08408275.1| cold-shock DEAD-box protein A [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038040|gb|EGI74487.1| cold-shock DEAD-box protein A [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 592

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 140/331 (42%), Positives = 213/331 (64%), Gaps = 8/331 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY  P+ IQ + IPL+L+R DV G+AQTGTGKTA+F LP+L  ++     V+ P+ L+L 
Sbjct: 2   GYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLLNNIDPS---VKQPQILVLT 58

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA+ FE+Y K+   + V  L GG  +  Q   L RGA V++ TPGR++DH N
Sbjct: 59  PTRELAIQVAEAFEQYAKHVRGIEVLALYGGQSYSIQLSALRRGAQVIVATPGRLIDHIN 118

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           RG +  + ++ LV+DEAD ML MGFI  +++I    P  +QT LFSATM  ++Q +S  +
Sbjct: 119 RGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPREKQTCLFSATMPKQIQNISSKY 178

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           + NP+++ ++  +ST  ++E  F    A   K  A+++ L   Q   +  I+F   + + 
Sbjct: 179 MNNPEQVHISARNSTVSSVEQVF--WNASVHKNKAIVRFLEAEQ--YEGAIVFVRTRNDT 234

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
           V L   LE++GFS   ++G+++Q++R + +   K G + +++A+D+AARGLD+  +  V 
Sbjct: 235 VQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNIVIATDVAARGLDVDRLSLVI 294

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           N+D+P  +E Y+HRIGRTGRAGR GKA   V
Sbjct: 295 NYDIPQDSEAYVHRIGRTGRAGRTGKAILFV 325


>gi|221633115|ref|YP_002522340.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
 gi|221156880|gb|ACM06007.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
          Length = 534

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 148/367 (40%), Positives = 221/367 (60%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA LGLSP ++ A+ D G+ +P P+Q + IP++L   D    A TGTGKTA+F LP+L  
Sbjct: 14  FAALGLSPALLAALRDVGFEQPMPVQTEAIPVLLSGRDAIVQAHTGTGKTAAFALPILQG 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++  G      P+ L+L PTRELA QVA+   + G+  +  V  L GG P E Q + L  
Sbjct: 74  LVPYGHG----PQALVLTPTRELAIQVAEAIHRLGRYLDARVLALYGGQPIERQLRALRH 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DV++ TPGRI+DH  R  L ++ + ++++DEAD MLDMGFI  ++ I   VP  RQT 
Sbjct: 130 PVDVIVGTPGRIMDHLRRETLRLDQVRVVILDEADEMLDMGFIEDVEWILEHVPRERQTA 189

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++++++ +L+ P  I ++    T  +I    V   A ++K  AL + L   
Sbjct: 190 LFSATIPPRIRQLTQRYLRAPVTIAIHPERVTVPSIAQT-VYEVAAHAKLEALSRIL--D 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIF   K     L H L+  G++  AIHG++ Q  R + +  F+ G + L++A
Sbjct: 247 YEAPTSAIIFVRTKSGADELAHKLQSLGYAAEAIHGDLSQAMRDRAMQRFRAGQVDLLIA 306

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP V HV NFD+P+  E+Y+HRIGRTGRAG  G A TL+   +   +  IE
Sbjct: 307 TDVAARGLDIPAVSHVINFDIPSDPESYVHRIGRTGRAGATGTAITLIEPRERWLLRTIE 366

Query: 362 KLIEKKV 368
           + I +++
Sbjct: 367 RAIGQRL 373


>gi|319424978|gb|ADV53052.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 635

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 147/367 (40%), Positives = 230/367 (62%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ A+ + GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L  
Sbjct: 8   FRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           +         P+ L+L PTRELA QVA+ F  Y K   N  V  + GG   + Q   L+R
Sbjct: 68  VTSQTT----PQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L +++++ LV+DEAD ML MGFI  I+ I    P  RQ  
Sbjct: 124 GPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWILEHTPSERQLA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +++++V+   L++P  + + +  +T E+IE  FV   +Q++K  AL++ +L+ 
Sbjct: 184 LFSATMPEQIKRVANQHLRSPVHVRIESSQTTVESIEQRFVQV-SQHNKLEALVR-VLEV 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++T +  IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++A
Sbjct: 242 ENT-EGVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +GHV N+D+P  AE Y+HRIGRTGRAGR G A   V   +++ +  IE
Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360

Query: 362 KLIEKKV 368
           +    ++
Sbjct: 361 RSTNSRI 367


>gi|88860375|ref|ZP_01135013.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           tunicata D2]
 gi|88817573|gb|EAR27390.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           tunicata D2]
          Length = 609

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 142/356 (39%), Positives = 226/356 (63%), Gaps = 9/356 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LSP+++ +V   GYV P+ IQ + IP +L   DV G+AQTGTGKTA+F LP+L  
Sbjct: 7   FSSLNLSPEILKSVEKLGYVTPSEIQAQCIPFLLNGKDVLGLAQTGTGKTAAFALPLLNN 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++   A V+ P+ L+L PTRELA QVA+ FE+Y +    + V  L GG  +  Q   L  
Sbjct: 67  ID---ATVKHPQVLVLAPTRELAIQVAEAFEQYAQFIKGINVLALYGGQSYNVQLSGLRN 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH NRG +  ++++ LV+DEAD ML MGFI  ++ I +  P  +QT 
Sbjct: 124 GPQVIVATPGRLIDHLNRGTIKFDHLKALVLDEADEMLRMGFIEDVETIMAKTPKQKQTC 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  ++QK+   +L++ + + ++  +ST E++E  +   +   + K   + + LQ+
Sbjct: 184 LFSATMPQQIQKICSTYLEDAEHVHISARNSTVESVEQVY---WQANTHKNNAIIRFLQA 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T    I+F   + + V +   LE+ GFS   ++G+++Q++R + +   K G + +++A
Sbjct: 241 E-TYDGAIVFVRTRNDTVEIAELLEQAGFSAAPLNGDMNQQARERTVERLKNGLLDIVIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +D+AARGLD+  +  V N+D+P  +E Y+HRIGRTGRAGR GKA   V K + +H+
Sbjct: 300 TDVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFV-KHNERHL 354


>gi|152995916|ref|YP_001340751.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150836840|gb|ABR70816.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 398

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 162/403 (40%), Positives = 236/403 (58%), Gaps = 12/403 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+ + GY  PTP+Q + IP++L   D+   AQTGTGKTA+FVLP+L
Sbjct: 1   MPFAKLGLSSPLVQAITELGYKTPTPVQKQAIPIILSGKDLIATAQTGTGKTAAFVLPLL 60

Query: 61  TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K G  R +  R LIL PTRELA QV  +  +Y K+  LT   + GG+  EAQ ++L
Sbjct: 61  ERFTKAGTLRGKRIRVLILVPTRELAVQVEASVAQYAKHTKLTSMAVYGGVDTEAQKERL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD  ++  L  + ++++V+DEADRM+DMGF+  I  I   +P  RQ
Sbjct: 121 IEGVDILVATPGRLLDLAHQRALHFDELKVMVLDEADRMVDMGFVGDINKIMERLPENRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQN-----PKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
            LLFSATMTD+++ ++ +F  +        I ++     A  I+   +        K AL
Sbjct: 181 NLLFSATMTDDVRALAFDFSDSKMTDLAAEISISPNVRAAANIKQWLITV--DKDTKSAL 238

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L+  Q      +IF  +K     L   L K+G     IHG+  Q  R KIL+ FK G
Sbjct: 239 LSHLINEQK-WDQALIFIEKKHGAAKLVDQLAKRGIVADCIHGDRSQAMREKILAQFKSG 297

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            ++ +VA+ +AARGLDI ++  V N+D+P + E YIHRIGRTGRAG  G+A + VA  D 
Sbjct: 298 ELKYLVATGVAARGLDIGELSRVVNYDLPFKPEEYIHRIGRTGRAGALGEAISFVAMGDF 357

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           K++ AIE  ++  +D    +++   P  + + ++  N+ RK N
Sbjct: 358 KNLCAIESRLKHIID--RKEIAGF-PVRKVVPVSILNYVRKAN 397


>gi|153834507|ref|ZP_01987174.1| RhlE [Vibrio harveyi HY01]
 gi|148869093|gb|EDL68132.1| RhlE [Vibrio harveyi HY01]
          Length = 411

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 151/362 (41%), Positives = 221/362 (61%), Gaps = 4/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV   GY KPT IQ K IP+VL+  ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSAPITDAVKALGYEKPTSIQQKAIPIVLRGRNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G   R +  R +IL PTRELA QV  + E YGKN  L    + GG+ +  Q + L
Sbjct: 61  EKLSQGETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVDYAPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR++D + +  +  + +E+LV+DEAD+MLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIVDCMPEDIQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT+++ ++ +++N + +P+ I +   S++   I+     T      K +LL  +L
Sbjct: 181 SLLFSATLSNPVRDLAKNAIVDPEEISIAKHSASKSNIKQWI--TTVDKDMKSSLLSHML 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     ++F   K     L   LEK+G    A H   +QR R +++  FK G IQ +
Sbjct: 239 NEND-WSQVLVFIETKHGAAKLVTQLEKRGIVAEAFHSGRNQRVRQELIEQFKAGEIQYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI ++  V N+D+P  A+ Y+HRIGRTGRAG  G+A +LV+K+D K++  
Sbjct: 298 VATGVAARGIDIDNLPVVINYDLPYPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCM 357

Query: 360 IE 361
           IE
Sbjct: 358 IE 359


>gi|325928505|ref|ZP_08189695.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118]
 gi|325541118|gb|EGD12670.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118]
          Length = 537

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 146/373 (39%), Positives = 228/373 (61%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV + GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 11  FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
            +  + +   P+ L+L PTRELA QVA+ F+KY +      V  + GG P+  Q   L+R
Sbjct: 71  ADLHQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P  + +   ++T+  I   +   +     K   L ++L+ 
Sbjct: 188 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRY--WWVSGLHKLDALTRILEV 245

Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   IIF   K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++
Sbjct: 246 EPFDGM---IIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDIL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR+G A   V   +   + +
Sbjct: 303 VATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRS 362

Query: 360 IEKLIEKKVDWLN 372
           IE+   + ++ + 
Sbjct: 363 IERATRQPIEEMQ 375


>gi|297538310|ref|YP_003674079.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera sp.
           301]
 gi|297257657|gb|ADI29502.1| DEAD/DEAH box helicase domain protein [Methylotenera sp. 301]
          Length = 630

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 147/374 (39%), Positives = 230/374 (61%), Gaps = 11/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L L   ++ A+ ++GY  PT IQ + IP+V   HD+   AQTGTGKTA+F+LP L
Sbjct: 23  LSFESLNLDNALLRAIEESGYTTPTAIQSQAIPVVTAGHDLMASAQTGTGKTAAFMLPAL 82

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L      + R PR L+L PTRELA QV +   KYGK        ++GG+P+  QNK L
Sbjct: 83  NLLATPHELKSRGPRILVLVPTRELATQVNEAARKYGKFIRARTVSIVGGMPYPLQNKLL 142

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+L+ TPGR+LDH  RG++ ++ +++L++DEADRMLDMGF+P ++ I   +   RQ
Sbjct: 143 SQPLDILVATPGRLLDHMERGRIDLSRLQMLILDEADRMLDMGFLPDVERICEQLSAERQ 202

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY----SKKCALL 235
           TLLFSAT+  ++ +V++  L+NPK I+V       +  +H  +     Y    + K  LL
Sbjct: 203 TLLFSATLDGDIARVAKQILKNPKTIQV-----AGQKEKHANIEQRLHYVDDMTHKNKLL 257

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + LL + + +   IIF + K++   L   L   G    A+HG++ Q +R + L+  ++G 
Sbjct: 258 EHLLIAPE-VNQVIIFTSTKRHCDVLAEDLYAAGHKTAALHGDMTQGARNRTLTKLRQGD 316

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARG+DI  + HV N+D+P  AE+Y+HRIGRTGRAG+ G A +  +  D  
Sbjct: 317 VKVLVATDVAARGIDINGISHVINYDLPKFAEDYVHRIGRTGRAGKTGIAISFASNMDRH 376

Query: 356 HIDAIEKLIEKKVD 369
            +  IE+    +++
Sbjct: 377 ILRKIEQFTGNRME 390


>gi|83950175|ref|ZP_00958908.1| putative ATP-dependent RNA helicase protein [Roseovarius
           nubinhibens ISM]
 gi|83838074|gb|EAP77370.1| putative ATP-dependent RNA helicase protein [Roseovarius
           nubinhibens ISM]
          Length = 431

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 149/378 (39%), Positives = 232/378 (61%), Gaps = 9/378 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGL+P +  A+  AG+ +PTPIQ + IPL L+ HD+ G+AQTGTGKT +F LP++ 
Sbjct: 3   DFDMLGLAPALNEALTRAGFSEPTPIQNQAIPLALEGHDILGLAQTGTGKTLAFGLPLIN 62

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L  E G+   +  + LIL PTREL  Q+AD+         L VA ++GG     Q   L
Sbjct: 63  HLLAEPGKPAPKTAKALILAPTRELVNQIADSLRNLTDGTRLRVATVVGGQSINRQITFL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR++D  +R  + + ++  LV+DEAD+MLD+GFI  ++ I   +   RQ
Sbjct: 123 ARGTDILVATPGRLIDLMDRRAVDLGSVRHLVLDEADQMLDLGFIHALRKIAPRLGTPRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCALLQQ 237
           T+LFSATM  +++++S  +L+NP++++V+ P   A+ I     F+   A+ SK    L++
Sbjct: 183 TMLFSATMPKQMEELSRAYLENPRKVQVSPPGKAADKITQSVHFLEKPAKPSK----LRE 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L S+D     ++F   K     L   L   G++  +IHGN  Q  R + +  F+ G I 
Sbjct: 239 IL-SRDMDALTLVFSRTKHGAEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRAGEIN 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DIP V +V N+D+P+  +NY+HRIGRT RAGR G+A    + E+   +
Sbjct: 298 VLVATDVAARGIDIPGVAYVINYDLPDVPDNYVHRIGRTARAGREGEAIAFCSSEEADLL 357

Query: 358 DAIEKLIEKKVDWLNGDL 375
             I++L++  +   +G L
Sbjct: 358 RQIQRLMKIDIPVASGTL 375


>gi|295085349|emb|CBK66872.1| Superfamily II DNA and RNA helicases [Bacteroides xylanisolvens
           XB1A]
          Length = 374

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 153/371 (41%), Positives = 232/371 (62%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L ++  ++ A+ + GY  PTPIQ K IP  L + D+ G AQTGTGKTASF +P++
Sbjct: 1   MTFKELNITEPILKAIGEKGYTVPTPIQEKAIPPALAKRDILGCAQTGTGKTASFAIPII 60

Query: 61  TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L+  K  AR +  + LIL PTRELA Q+++  + Y K+  +   ++ GG+    Q   
Sbjct: 61  QHLQLDKEAARRQGIKALILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVDL 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD  ++G + ++ I+  V+DEADRMLDMGFI  I+ I   +P  +
Sbjct: 121 LRKGIDILVATPGRLLDLMSQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM D +  ++++ L+NP +I +   SST ++I+   V  + +  +K  LL  +
Sbjct: 181 QTLFFSATMPDSIISLTKSLLKNPVKIYITPKSSTVDSIKQ--VVYFVEKKEKSQLLISI 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S+   ++ +IF   K N   +   L K G    AIHGN  Q +R   L NFK G  ++
Sbjct: 239 L-SKAEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A T  ++E+ K ++
Sbjct: 298 MVATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNMGTALTFCSQEERKLVN 357

Query: 359 AIEKLIEKKVD 369
            I+KL  KK++
Sbjct: 358 DIQKLTGKKLN 368


>gi|119477499|ref|ZP_01617690.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
 gi|119449425|gb|EAW30664.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
          Length = 608

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 149/361 (41%), Positives = 221/361 (61%), Gaps = 6/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  V  AV   GY +P+PIQ  TIP +L   D+ G+AQTGTGKTA+F LP+L+ 
Sbjct: 9   FTELALSAPVQKAVSIVGYEQPSPIQAATIPHLLNGDDLLGVAQTGTGKTAAFALPLLSR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++    +   P+ L+L PTRELA QVA+ F+ Y        V  + GG     Q ++L+R
Sbjct: 69  ID---LKKNSPQVLVLAPTRELAIQVAEAFKTYASQMKGFHVLPIYGGQDMSGQLRQLKR 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  RG L ++ +  LV+DEAD ML MGFI  ++ I    P  RQ  
Sbjct: 126 GAHVVVGTPGRVMDHLRRGSLNLDGLTGLVLDEADEMLRMGFIDDVEWILEHTPPKRQVA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++KV++ +L +PK + + T ++TA  IE  ++     + +K   + ++L++
Sbjct: 186 LFSATMPKPIRKVADRYLSDPKEVRIATDATTAPRIEQRYLIVNG-FDRKLDAITRILEA 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D     IIF   K     L   LE +G+S  A++G+++Q  R + ++  K+  + ++VA
Sbjct: 245 DD-FDAMIIFVRTKTATAELAEKLEARGYSASALNGDMNQALRERTINRLKKKQLDIIVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+  V HV NFD+P   E Y+HRIGRTGRAGR GKA   VA  + + +  IE
Sbjct: 304 TDVAARGIDVERVSHVLNFDIPYDPEAYVHRIGRTGRAGREGKAILFVAPREKRLLHTIE 363

Query: 362 K 362
           K
Sbjct: 364 K 364


>gi|262191718|ref|ZP_06049893.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
 gi|262032413|gb|EEY50976.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
          Length = 397

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 155/373 (41%), Positives = 224/373 (60%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V  V   GY KPT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YGK+  L    + GG+  +AQ ++L
Sbjct: 61  EKLRQGQTQRKKRIRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  +++P  I +    ++   I    +        K ALL  L+
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV--DKDTKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 239 NEQ-KWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357

Query: 360 IEK----LIEKKV 368
           IE     LIE++V
Sbjct: 358 IESRLGHLIERRV 370


>gi|269961058|ref|ZP_06175427.1| ATP-dependent RNA helicase RhlE [Vibrio harveyi 1DA3]
 gi|269834277|gb|EEZ88367.1| ATP-dependent RNA helicase RhlE [Vibrio harveyi 1DA3]
          Length = 411

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 151/362 (41%), Positives = 221/362 (61%), Gaps = 4/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV   GY KPT IQ K IP+VL+  ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSAPITDAVKALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G   R +  R +IL PTRELA QV  + E YGKN  L    + GG+ +  Q + L
Sbjct: 61  EKLSQGETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVDYAPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR++D + +  +  + +E+LV+DEAD+MLDMGFI  I  I   +P   Q
Sbjct: 121 IEGVDIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIVDCMPEDIQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT+++ ++ +++N + +P+ I +   S++   I+     T      K +LL  +L
Sbjct: 181 SLLFSATLSNPVRDLAKNAIVDPEEISIAKHSASKSNIKQWI--TTVDKDMKSSLLSHML 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     ++F   K     L   LEK+G    A H   +QR R +++  FK G IQ +
Sbjct: 239 NEND-WSQVLVFIETKHGAAKLVTQLEKRGIVAEAFHSGRNQRVRQELIEQFKAGEIQYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI ++  V N+D+P  A+ Y+HRIGRTGRAG  G+A +LV+K+D K++  
Sbjct: 298 VATGVAARGIDIDNLPVVINYDLPFPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCM 357

Query: 360 IE 361
           IE
Sbjct: 358 IE 359


>gi|318040201|ref|ZP_07972157.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0101]
          Length = 537

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 224/368 (60%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G +P+++ A+   GY +P+PIQ   IP +L   D+ G AQTGTGKTA+F LPML  
Sbjct: 80  FASFGFAPELLDALTAIGYEEPSPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPMLAA 139

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+    + R P+ L+L PTRELA QVAD F+ Y  N  +L V  L GG  F  Q  +L+R
Sbjct: 140 LD---GQQRTPQVLVLTPTRELAIQVADAFKSYAANMPHLRVLPLYGGSDFRDQIVRLKR 196

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH  +G L ++ +  LV+DEAD ML MGFI  ++ +   +P  RQ +
Sbjct: 197 GVQIVVGTPGRVMDHMRQGTLDLSGLRSLVLDEADEMLRMGFIDDVEWVLEQLPSQRQVV 256

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++S  +L +P  + + T  + +  I   F+       +K   L ++L+S
Sbjct: 257 LFSATMPPEIRRISHKYLNDPAEVTIKTKGADSSRIRQRFITVNG--PQKLEALTRVLES 314

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T +  IIF   K   V +  +LE +G+ V  ++G++ Q  R + +   K GT+ ++VA
Sbjct: 315 E-TKEGVIIFARTKAITVTVAEALEAKGYDVAVLNGDVAQSQRERTIERLKNGTVDVLVA 373

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D+P  +E Y+HR+GRTGRAGR G A   V   + + +  +E
Sbjct: 374 TDVAARGLDVDRITLVVNYDIPFDSEAYVHRVGRTGRAGRSGDAILFVTPRERRFLGGLE 433

Query: 362 KLIEKKVD 369
           + + + ++
Sbjct: 434 RAVGRPIE 441


>gi|15599145|ref|NP_252639.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|218889767|ref|YP_002438631.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
 gi|9950138|gb|AAG07337.1|AE004813_4 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|218769990|emb|CAW25752.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
          Length = 449

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 150/366 (40%), Positives = 225/366 (61%), Gaps = 5/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   G+  PTPIQ + IP  L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               LE  +      R L+L PTRELA QV  +   YG++  L  A+  GG+    Q  K
Sbjct: 61  QRLTLEGPQVAANSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD + +  +    ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D ++ ++   L++P  IEV+  ++ A+++    V       +K  L   L
Sbjct: 181 QTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPV--DKKRKAELFCHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ+ +  +  ++F   +K+V  L   L++QG +  +IHG+  Q +R++ L  FK G + L
Sbjct: 239 LQA-NRWRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDL 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLA 357

Query: 359 AIEKLI 364
           AIE LI
Sbjct: 358 AIETLI 363


>gi|313109386|ref|ZP_07795348.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
 gi|310881850|gb|EFQ40444.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
          Length = 449

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 150/366 (40%), Positives = 225/366 (61%), Gaps = 5/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   G+  PTPIQ + IP  L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               LE  +      R L+L PTRELA QV  +   YG++  L  A+  GG+    Q  K
Sbjct: 61  QRLTLEGPQVAANSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD + +  +    ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D ++ ++   L++P  IEV+  ++ A+++    V       +K  L   L
Sbjct: 181 QTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPV--DKKRKAELFCHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ+ +  +  ++F   +K+V  L   L++QG +  +IHG+  Q +R++ L  FK G + L
Sbjct: 239 LQA-NRWRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDL 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLA 357

Query: 359 AIEKLI 364
           AIE LI
Sbjct: 358 AIETLI 363


>gi|294665477|ref|ZP_06730761.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292604731|gb|EFF48098.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 648

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 146/373 (39%), Positives = 228/373 (61%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV + GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 27  FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
            +  + +   P+ L+L PTRELA QVA+ F+KY +      V  + GG P+  Q   L+R
Sbjct: 87  ADLNQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 144 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVA 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P  + +   ++T+  I   +   +     K   L ++L+ 
Sbjct: 204 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRY--WWVSGLHKLDALTRILEV 261

Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   IIF   K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++
Sbjct: 262 EPFDGM---IIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDIL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR+G A   V   +   + +
Sbjct: 319 VATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRS 378

Query: 360 IEKLIEKKVDWLN 372
           IE+   + ++ + 
Sbjct: 379 IERATRQPIEEMQ 391


>gi|288925923|ref|ZP_06419853.1| ATP-dependent RNA helicase RhlE [Prevotella buccae D17]
 gi|288337347|gb|EFC75703.1| ATP-dependent RNA helicase RhlE [Prevotella buccae D17]
          Length = 375

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 157/370 (42%), Positives = 229/370 (61%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +S  ++ A+    Y  PTPIQ K IP+ L+  D+ GIAQTGTGKTA+F +P++
Sbjct: 1   MTFNELNISKPILKALELKEYETPTPIQQKAIPIGLEGRDLLGIAQTGTGKTAAFAIPII 60

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L K     R R  + LIL PTRELA Q+ + F+ Y K   L   ++ GG+    Q K+
Sbjct: 61  QQLAKSADDNRRRDIKALILTPTRELAIQIEECFKDYSKFTRLRCCVIFGGVSQNGQVKE 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG D+LI TPGR+LD  ++  + + +I   V+DEADRMLDMGFI  I+ +  L+P  R
Sbjct: 121 LERGVDILIATPGRLLDLISQHIITLEHICHFVLDEADRMLDMGFIHDIKKLIPLLPKRR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM + + K+S++ L  P R+EV   SS  +TIE      + +  +K  LL  +
Sbjct: 181 QTLLFSATMPETIAKLSKSLLYKPARVEVAPVSSVVDTIEQRLY--FVEKPQKTDLLVSV 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L++ D  ++ ++F   K     +   L+ +     AIHGN  Q +R + L+NFK G  ++
Sbjct: 239 LKN-DGNRSALVFSRTKHGADRIARKLKARHIECEAIHGNKSQNARQRALTNFKSGKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI ++  V N+D+P+ AE Y+HRIGRTGRAG  G A T   +++   + 
Sbjct: 298 IVATDIAARGIDIANLQMVINYDLPDVAETYVHRIGRTGRAGNSGVALTFCTQDERPMVR 357

Query: 359 AIEKLIEKKV 368
            I+KL  KK+
Sbjct: 358 DIQKLTGKKL 367


>gi|168701792|ref|ZP_02734069.1| RNA helicase DeaD [Gemmata obscuriglobus UQM 2246]
          Length = 572

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 152/369 (41%), Positives = 221/369 (59%), Gaps = 3/369 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL  ++V  +   GY +PTPIQ + IP +++ HD+ G A TGTGKTA+F LP+L  
Sbjct: 23  FAKLGLDSRLVERLTGLGYEEPTPIQREAIPPLIEGHDLIGRAATGTGKTAAFSLPILHG 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +  AR + P +LIL PTRELA QVA++  KYG+   + V  + GG P + Q + L+RG
Sbjct: 83  LARSTARTK-PTSLILVPTRELAMQVAESVAKYGQPLGVRVLPIYGGAPMDQQIRALDRG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR LDH  R  L ++ I ++V+DEAD MLDMGF   I+ I +  P  RQT L
Sbjct: 142 IDVVVATPGRALDHMRRTTLKLDAITVVVLDEADEMLDMGFAEDIEAILAATPTERQTAL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSATM   ++ ++   L+N   I V   P    E  +    A   Q   K A L ++L  
Sbjct: 202 FSATMAPRIKAIAVKHLKNATEIHVTRDPVPAGELPKVRQTAYVVQRQYKLAALGRVLDG 261

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + +    +IFC  +  V  L  +L  +G+   A+HG + Q +R +++  F+ G   L+VA
Sbjct: 262 E-SPAAALIFCKTRSEVDELTEALGGRGYRPEALHGGMAQDARDRVMRLFRAGQANLLVA 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV NF +P   ENY+HRIGR GRAGR G A T+    +   + AIE
Sbjct: 321 TDVAARGLDVEHLTHVVNFSLPLGIENYVHRIGRVGRAGREGVAITVAEPREQGALRAIE 380

Query: 362 KLIEKKVDW 370
           +   +++++
Sbjct: 381 RHTGQRIEY 389


>gi|78048530|ref|YP_364705.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036960|emb|CAJ24661.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 648

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 146/373 (39%), Positives = 228/373 (61%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV + GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 27  FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
            +  + +   P+ L+L PTRELA QVA+ F+KY +      V  + GG P+  Q   L+R
Sbjct: 87  ADLHQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 144 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPAQRQVA 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P  + +   ++T+  I   +   +     K   L ++L+ 
Sbjct: 204 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRY--WWVSGLHKLDALTRILEV 261

Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   IIF   K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++
Sbjct: 262 EPFDGM---IIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDIL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR+G A   V   +   + +
Sbjct: 319 VATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRS 378

Query: 360 IEKLIEKKVDWLN 372
           IE+   + ++ + 
Sbjct: 379 IERATRQPIEEMQ 391


>gi|218290125|ref|ZP_03494287.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239834|gb|EED07023.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 465

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 149/366 (40%), Positives = 231/366 (63%), Gaps = 7/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+ +V+ A+ D G+ +P+PIQ   IP+VL+  DV G AQTGTGKTA+F +P++  
Sbjct: 20  FESFGLNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIPLV-- 77

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E+     R+ + ++L PTRELA QVA    K  K   +    + GG     Q + L++G
Sbjct: 78  -ERVSTEPRV-QAIVLTPTRELAIQVAGEIRKIAKYKRVRSVPIYGGQSIVHQIRALKQG 135

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++I TPGR+LDH +RG L + ++ ++V+DEAD MLDMGFI  I+ I    P  RQT+L
Sbjct: 136 VQIVIGTPGRVLDHIHRGTLSLGDVRMVVLDEADEMLDMGFIDDIEAILRETPSDRQTML 195

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT  +E+++++  ++++P+ I VN    T   I+        +   K   L +++ S+
Sbjct: 196 FSATFPNEVKRLALRYMRDPQHITVNRGEVTVPQIDQVCYKVLER--NKLDSLCRIVDSE 253

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D ++ GIIFC  K+ V +L  +L  +G+    +HG++ Q  R +++  F++  I+L+VA+
Sbjct: 254 D-IQLGIIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIELLVAT 312

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+ DV HV N+DVP   E+Y+HRIGRTGRAG+ G A TLV   + K +  IE+
Sbjct: 313 DVAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKLLKQIER 372

Query: 363 LIEKKV 368
            I++K+
Sbjct: 373 EIKQKI 378


>gi|104773512|ref|YP_618492.1| DEAD-box ATP dependent DNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116513507|ref|YP_812413.1| superfamily II DNA/RNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103422593|emb|CAI97196.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116092822|gb|ABJ57975.1| Superfamily II DNA and RNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|325125143|gb|ADY84473.1| ATP-dependent RNA helicase-like protein [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 483

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 148/385 (38%), Positives = 234/385 (60%), Gaps = 15/385 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+  ++ A+  +G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFTELGLNDNILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  +    + + +++EPTRELA Q  +   + G++    V ++ GG     Q + L+
Sbjct: 61  QKLDLDKQEQAI-QAIVIEPTRELAIQTQEELFRLGRDEKAKVQVVYGGADIGRQIRDLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  ++L+ TPGR+LDH  R  + ++ ++ +V+DEAD MLDMGFI  I++I +      QT
Sbjct: 120 KVPEILVGTPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQQL 238
           LLFSATM   +Q + E F+ +P+ +++     TA+ I+  FV      ++   C L+   
Sbjct: 180 LLFSATMPKPIQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLID-- 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +++ D     ++F   K+ V  L   L  +G++   IHG++ Q  RM++L  FKEG + +
Sbjct: 238 VENPDL---AVVFGRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDI 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG+ G + T V   +I ++ 
Sbjct: 295 LVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGMSVTFVTPNEIGYMR 354

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLE 383
            IE L +KK       +S L PP +
Sbjct: 355 TIEDLTKKK-------MSPLRPPTD 372


>gi|260596208|ref|YP_003208779.1| ATP-dependent RNA helicase DeaD [Cronobacter turicensis z3032]
 gi|260215385|emb|CBA27415.1| Cold-shock DEAD box protein A [Cronobacter turicensis z3032]
          Length = 638

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 144/377 (38%), Positives = 235/377 (62%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FTDLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLHN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           ++     +R P+ L+L PTRELA QVA+    + K+ + + V  L GG  ++ Q + L +
Sbjct: 68  IDD---TLRAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++N++ LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   + + Y    +K   L + L+S
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGM--RKNEALVRFLES 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|134300131|ref|YP_001113627.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134052831|gb|ABO50802.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 482

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 149/368 (40%), Positives = 225/368 (61%), Gaps = 10/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  V  ++   G+ + TPIQ K IP+ L   D+ G A TGTGKTA+F +PM+  
Sbjct: 4   FYELGLSKSVSESIKLMGFEEATPIQEKAIPIALSGGDLIGQAHTGTGKTAAFGIPMVER 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             + +  ++    LI+ PTRELA QVA+   + G+   +    + GG     Q + L++ 
Sbjct: 64  FSRQQDTIQ---GLIITPTRELAVQVAEEMNRIGQVKGIHTLPVYGGQDINRQIRALKKK 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++DH  R  + +N + ++V+DEAD ML+MGFI  I+ I   VP  RQTLL
Sbjct: 121 PHIIVGTPGRLMDHMKRKTIRLNELTMVVLDEADEMLNMGFIEDIEEILQQVPEERQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL--Q 240
           FSAT++  +Q+++  FL+NP+ I +     T  +I+  +V    Q  +K  +L   L  Q
Sbjct: 181 FSATISKPIQELARRFLKNPEFIAIKAKEVTVPSIDQSYVEV--QEKQKFEVLSTFLDIQ 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S D     I+F   K+ V  L  +L K+G+S   IHG++ Q  R  +L  FKEG I+++V
Sbjct: 239 SPDL---AIVFGRTKRRVDELYEALSKRGYSAEGIHGDLTQSKRESVLRQFKEGIIEVLV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G+A T V   ++ H+  I
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGEAITFVTPREMNHLRLI 355

Query: 361 EKLIEKKV 368
           E++ + K+
Sbjct: 356 ERITKHKI 363


>gi|298482320|ref|ZP_07000507.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
 gi|298271607|gb|EFI13181.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
          Length = 374

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 153/371 (41%), Positives = 231/371 (62%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L ++  ++ A+ + GY  PTPIQ K IP  L + D+ G AQTGTGKTASF +P++
Sbjct: 1   MTFKELNITEPILKAIEEKGYTVPTPIQEKAIPPALAKRDILGCAQTGTGKTASFAIPII 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               L+K  AR +  + LIL PTRELA Q+++  + Y K+  +   ++ GG+    Q   
Sbjct: 61  QHLQLDKEAARRQGIKALILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVDL 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD   +G + ++ I+  V+DEADRMLDMGFI  I+ I   +P  +
Sbjct: 121 LRKGIDILVATPGRLLDLMTQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM D +  ++++ L+NP +I +   SST ++I+   V  + +  +K  LL  +
Sbjct: 181 QTLFFSATMPDSIISLTKSLLKNPVKIYITPKSSTVDSIKQ--VVYFVEKKEKSQLLISI 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S+   ++ +IF   K N   +   L K G    AIHGN  Q +R   L NFK G  ++
Sbjct: 239 L-SKAEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A T  ++E+ K ++
Sbjct: 298 MVATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNMGTALTFCSQEERKLVN 357

Query: 359 AIEKLIEKKVD 369
            I+KL  KK++
Sbjct: 358 DIQKLTGKKLN 368


>gi|326773277|ref|ZP_08232560.1| cold-shock DEAD box protein A [Actinomyces viscosus C505]
 gi|326636507|gb|EGE37410.1| cold-shock DEAD box protein A [Actinomyces viscosus C505]
          Length = 865

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 152/394 (38%), Positives = 234/394 (59%), Gaps = 16/394 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ AV D G+V PT IQ + IP++L   DV G+AQTGTGKTA+F LP+L  
Sbjct: 164 FADLGLPGDLLKAVTDMGFVTPTAIQKEAIPVLLAGRDVVGVAQTGTGKTAAFGLPLLDA 223

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNF-EKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++   +R  + + L+L PTRELA Q A+   +   ++  L V  + GG P+  Q   L+ 
Sbjct: 224 VD---SRDNVVQALVLAPTRELALQSAEAITDMAARSRGLEVVAVYGGAPYGPQIGALKG 280

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++D  ++G L ++++   V+DEAD ML MGF   ++ I   +P  R+T 
Sbjct: 281 GAQVVVGTPGRVIDLIDKGALQLDDVRYFVLDEADEMLRMGFAEDVETIAESLPADRRTA 340

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +Q V+   L  P ++EV+ P+ST  T+   +      +  K   + ++L  
Sbjct: 341 LFSATMPPAIQAVARQHLHEPVQVEVSRPASTVATVHQTYAVV--PFRHKIGAVSRVLAV 398

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D  +  I+F   K    ++   L  +G    AI G++ QR R +++   + GT+ ++VA
Sbjct: 399 TDA-EAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVLVA 457

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V NFDVP  AE Y+HRIGRTGRAGRHG+A T +  ++   +  IE
Sbjct: 458 TDVAARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQIE 517

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           +L   +++ +     +L  P    D+++H  ARK
Sbjct: 518 RLTGSRLEEI-----TLPSP---ADVSEHR-ARK 542


>gi|296170155|ref|ZP_06851752.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295895181|gb|EFG74896.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 566

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 145/361 (40%), Positives = 219/361 (60%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL + P V+ A+ D GY  PT IQ  TIP ++   DV G+AQTGTGKTA+F +P+L+ 
Sbjct: 15  FADLQIHPSVLRAIADVGYESPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSK 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++      +  + L+L PTRELA QVA+ F +YG +   + V  + GG  +  Q   L R
Sbjct: 75  IDVAS---KATQALVLAPTRELALQVAEAFSRYGAHLPKVNVLPIYGGSSYTVQLAGLRR 131

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  RG L +++++ LV+DEAD ML MGF   +  I S  P  +Q  
Sbjct: 132 GAQVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVA 191

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K++  +L +P  +     ++TAE I   ++       +K   L ++L+ 
Sbjct: 192 LFSATMPPAIRKLTTKYLHDPLEVSTKAKTATAENISQRYIQVAG--PRKMDALTRVLEV 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  I+F   K+    +   L  +GFS  AI+G+I Q  R + ++  K+G I ++VA
Sbjct: 250 E-PFEAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  +   + AIE
Sbjct: 309 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLRAIE 368

Query: 362 K 362
           K
Sbjct: 369 K 369


>gi|118462257|ref|YP_880643.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium avium 104]
 gi|118163544|gb|ABK64441.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium avium 104]
          Length = 566

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 145/361 (40%), Positives = 219/361 (60%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL + P V+ A+ D GY  PT IQ  TIP ++   DV G+AQTGTGKTA+F +P+L+ 
Sbjct: 15  FADLQIHPSVLRAIADVGYETPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSK 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++      +    L+L PTRELA QVA+ F +YG +   + V  + GG  +  Q   L+R
Sbjct: 75  IDVASTATQ---ALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYAVQLAGLKR 131

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  RG L +++++ LV+DEAD ML MGF   +  I S  P  +Q  
Sbjct: 132 GAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVA 191

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K++  +L +P  +     ++TAE I   ++       +K   L ++L+ 
Sbjct: 192 LFSATMPPAIRKLTAKYLHDPLEVSTKAKTTTAENISQRYIQVAG--PRKMDALTRVLEV 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  I+F   K+    +   L  +GFS  AI+G+I Q  R + ++  K+G I ++VA
Sbjct: 250 E-PFEAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  +   + AIE
Sbjct: 309 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLKAIE 368

Query: 362 K 362
           K
Sbjct: 369 K 369


>gi|152986565|ref|YP_001346544.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
 gi|150961723|gb|ABR83748.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
          Length = 447

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 151/366 (41%), Positives = 225/366 (61%), Gaps = 5/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   G   PTPIQ + IP  L+  D+   AQTGTGKTA+F LP+L
Sbjct: 1   MTFASLGLLDPLLKALEGLGLHTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAAFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               LE  +      R L+L PTRELA QV  +   YG++  L  A+  GG+    Q  K
Sbjct: 61  QRLTLEGPQVAANSVRALVLVPTRELAEQVHGSIRDYGQHLPLRTAVAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD + +  +    ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLYRQNAVQFARLQALVLDEADRMLDLGFARELDELFAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D ++ ++   L++P  IEV+  ++ A+++    V       +K  L   L
Sbjct: 181 QTLLFSATFSDAIRTLAGELLRDPLSIEVSPRNTAAKSVRQWLVPV--DKKRKAELFCHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ+ +  +  ++F   +K+V  L   L++QG +  +IHG+  Q +R++ L  FK G + L
Sbjct: 239 LQA-NRWRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDL 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGATGQALSLVCADEVELLA 357

Query: 359 AIEKLI 364
           AIE LI
Sbjct: 358 AIETLI 363


>gi|37521894|ref|NP_925271.1| ATP-dependent RNA helicase [Gloeobacter violaceus PCC 7421]
 gi|35212893|dbj|BAC90266.1| gll2325 [Gloeobacter violaceus PCC 7421]
          Length = 384

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 161/373 (43%), Positives = 221/373 (59%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADL L P +V AV   G+ +PTPIQ   IP  L   DV   A TG+GKTA+F+LP+L
Sbjct: 1   MTFADLQLHPDLVRAVEQLGFTQPTPIQTLAIPPALAGRDVLACAMTGSGKTAAFLLPIL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++ + R+  R    L+L PTRELA Q+  +  +  +   L  A +IGG+  E Q +  
Sbjct: 61  QQLIAQPRSTTR---ALVLTPTRELAGQIEMHLGQLARYSALRGASIIGGVSPEPQARAF 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G +VLI TPGR+LDHF++    + N+EILV+DEADRML+MGF+P I+ I       RQ
Sbjct: 118 HKGVEVLIGTPGRLLDHFDQPYARLANLEILVLDEADRMLEMGFLPDIRRILRHTGHRRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM   + K++   L+NP  +     ++ A  I H  V   AQ  K   LL+  L
Sbjct: 178 TLFFSATMPGPIAKLATEILRNPVTLNQERKAAPAVGITHS-VYPVAQNLKSKFLLE--L 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++ M+  I+F   K     L   L K   S   IHGN  Q  R + L+ FK G  +++
Sbjct: 235 LEREGMRQVIVFTRTKHRANRLSEYLSKARISCERIHGNRSQGQRTEALAGFKSGKYRVL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RG+DI  +GHV NFDVP  AE+YIHR+GRT RA R G AFT V+ E+   + A
Sbjct: 295 VATDIASRGIDIEALGHVVNFDVPQAAEDYIHRVGRTARAERTGDAFTFVSPEEEDQLRA 354

Query: 360 IEKLIEKKVDWLN 372
           IE+ I K++  L 
Sbjct: 355 IERAIGKRLPRLT 367


>gi|294625117|ref|ZP_06703762.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292600581|gb|EFF44673.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 648

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 146/373 (39%), Positives = 228/373 (61%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV + GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 27  FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
            +  + +   P+ L+L PTRELA QVA+ F+KY +      V  + GG P+  Q   L+R
Sbjct: 87  ADLNQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 144 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVA 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P  + +   ++T+  I   +   +     K   L ++L+ 
Sbjct: 204 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRY--WWVSGLHKLDALTRILEV 261

Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   IIF   K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++
Sbjct: 262 EPFDGM---IIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDIL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR+G A   V   +   + +
Sbjct: 319 VATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRS 378

Query: 360 IEKLIEKKVDWLN 372
           IE+   + ++ + 
Sbjct: 379 IERATRQPIEEMQ 391


>gi|295425677|ref|ZP_06818364.1| RNA helicase DeaD [Lactobacillus amylolyticus DSM 11664]
 gi|295064693|gb|EFG55614.1| RNA helicase DeaD [Lactobacillus amylolyticus DSM 11664]
          Length = 493

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 154/396 (38%), Positives = 243/396 (61%), Gaps = 16/396 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+  ++ A+  +G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFLELGLNEDLLKAIKRSGFEEATPIQAETIPLALAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+K    ++    +I+EPTRELA Q  +   + G++ +  V ++ GG     Q + L+
Sbjct: 61  QNLDKHEKTIQ---AVIIEPTRELAIQTQEELFRLGRDEHARVQVVYGGADIGRQIRSLK 117

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LDH  RG + ++  + +V+DEAD MLDMGFI  I++I   V   +Q
Sbjct: 118 HHVPAILVGTPGRLLDHLKRGTIDLSKTKTVVLDEADEMLDMGFIQDIESILKYVGERKQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + ++ E F+ +P+ +++     TA+ I+  FV   A+ S+K  ++ +L+
Sbjct: 178 TLLFSATMPKPILQIGEKFMHDPEVVKIKAKELTADLIDQYFVR--AKESEKFDIMCRLI 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      ++F   K+ V  L   L+ +G++   IHG++ Q  RM +L  F+ G ++++
Sbjct: 236 DVQGP-DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKQFRAGKLEIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEISYMQT 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           IE+L +KK       +S L PP +  D A H   ++
Sbjct: 355 IEQLTKKK-------MSPLRPPTD--DQALHGQLKQ 381


>gi|116051990|ref|YP_789167.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587211|gb|ABJ13226.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 449

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 150/366 (40%), Positives = 225/366 (61%), Gaps = 5/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   G+  PTPIQ + IP  L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               LE  +      R L+L PTRELA QV  +   YG++  L  A+  GG+    Q  K
Sbjct: 61  QRLTLEGPQVAANSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD + +  +    ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D ++ ++   L++P  IEV+  ++ A+++    V       +K  L   L
Sbjct: 181 QTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPV--DKKRKAELFCHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ+ +  +  ++F   +K+V  L   L++QG +  +IHG+  Q +R++ L  FK G + L
Sbjct: 239 LQA-NRWRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDL 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLA 357

Query: 359 AIEKLI 364
           AIE LI
Sbjct: 358 AIETLI 363


>gi|312114880|ref|YP_004012476.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100]
 gi|311220009|gb|ADP71377.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 405

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 150/374 (40%), Positives = 222/374 (59%), Gaps = 9/374 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL+  ++ A+ D  YV+PTPIQ K IP +LQ  D+ G+AQTGTGKTA+F LP+L +
Sbjct: 6   FEALGLAKPLLRALADENYVEPTPIQEKAIPHLLQGRDLLGLAQTGTGKTAAFALPLLQL 65

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L + +   + R  R LIL PTREL  Q+A +F+ YG +  LT  +++GG+    Q K L 
Sbjct: 66  LSERQDSPKPRTARALILVPTRELGLQIAASFKSYGHHLKLTSTVIMGGVSIGPQAKALS 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D L+ TPGR+LDH  +G + +      VIDEADRMLDMGFI  ++ +  ++P  RQ+
Sbjct: 126 RGVDFLVATPGRLLDHLGQGTVDLGQTSYFVIDEADRMLDMGFIRDVRKLMKVMPRKRQS 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQL 238
           +LFSATM  E+  ++E+ L++P  I +   +   E I+     V T      K  +L  L
Sbjct: 186 ILFSATMPKEIATLAEDILKDPVHITIPAKTVAVERIDQRVHLVTT----GNKPTMLAGL 241

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  Q      I+F   K++   +   L + G    AIHGN  Q +R K L N ++G  ++
Sbjct: 242 L-DQPEFDRVIVFTRTKRSANRVAERLLQGGVPTEAIHGNKSQAARQKALENLRQGKARV 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+ ARG+D+  + HV N+++PN  ENY+HRIGRT RAG  G A +     +   + 
Sbjct: 301 LVATDILARGIDVDSISHVINYELPNDPENYVHRIGRTARAGSDGIAISFCDLSERASLR 360

Query: 359 AIEKLIEKKVDWLN 372
            IE+ + + +  +N
Sbjct: 361 NIERFLGRSLTQVN 374


>gi|256829787|ref|YP_003158515.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578963|gb|ACU90099.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
           DSM 4028]
          Length = 545

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 153/370 (41%), Positives = 222/370 (60%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL  +++ A+ + GY  PT IQ + IP++L   D+   AQTGTGKT +F LP++
Sbjct: 1   MSFDQLGLRVELLKAIKNKGYEAPTAIQAQAIPVILAGRDILARAQTGTGKTDAFGLPIV 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL   R     PR LIL PTRELA QV ++ + Y +  +L   +  GG+  E Q  +LE
Sbjct: 61  QILGLTRGNGHHPRALILTPTRELALQVGESIKAYARKVSLRCTVAFGGVRIEPQIARLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+LD  ++  L + +IE LV DEADRMLD+GF   I  I  L+P  R+T
Sbjct: 121 RGIDILVATPGRLLDLASQEHLSLASIEFLVFDEADRMLDLGFSGEINAILDLLPTVRRT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL- 239
           +LFSAT T +++ ++   L  P+ IE+   ++ AE ++      +     K  LL  L+ 
Sbjct: 181 MLFSATYTPQIKALAAKMLDKPEYIEITPDTAAAEAVQQKV--HHVNKDNKLPLLLHLIE 238

Query: 240 -QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            Q QD +   ++F   +     L   L   G SV A+HG+  Q  R + L  FK+G I +
Sbjct: 239 KQKQDRI---LVFARTRTWANRLTDKLAAHGISVAALHGSKSQSLRKRTLEEFKDGKIHI 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI ++  V N+D+PN  E+Y+HRIGRTGRAG  G A +LV+ E+   + 
Sbjct: 296 LVATDVAARGLDISNLPLVVNYDIPNSPEDYVHRIGRTGRAGVSGIAVSLVSPEERNLLL 355

Query: 359 AIEKLIEKKV 368
           AIE L+  ++
Sbjct: 356 AIEDLLRHQI 365


>gi|226330865|ref|ZP_03806383.1| hypothetical protein PROPEN_04786 [Proteus penneri ATCC 35198]
 gi|225201660|gb|EEG84014.1| hypothetical protein PROPEN_04786 [Proteus penneri ATCC 35198]
          Length = 475

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 160/407 (39%), Positives = 241/407 (59%), Gaps = 10/407 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGLS  ++ A+ + GY  PTPIQ + I  +L   DV   AQTGTGKTA+F LP+L 
Sbjct: 3   DFTSLGLSEALLRAIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPILE 62

Query: 62  ILEKG--RARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L +   + + R P + LIL PTRELAAQ+A+N + Y +   +   ++ GG+    Q  K
Sbjct: 63  KLSQSATKTKGRQPVKALILTPTRELAAQIAENVKAYSRYIPIRSLVVFGGVSINPQMMK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G DVLI TPGR+LD  ++  + ++ +E+LV+DEADRMLDMGFI  I+ + + +P  R
Sbjct: 123 LRGGVDVLIATPGRLLDLEHQNAVDLSRVEVLVLDEADRMLDMGFIHDIRRVINKLPKKR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT + E+  ++ + L NP  I V   +S AE+++           +K  LL  L
Sbjct: 183 QNLLFSATFSKEITGLANSLLNNPVSISVAPKNSAAESVDQYV--HLVDKKRKTELLSHL 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   +     +IF   K     L   L   G    AIHGN  Q +R + L++FK+G ++ 
Sbjct: 241 I-GLENWPQVLIFTRTKHGANKLAEHLNADGIKSAAIHGNKSQGARTRALADFKDGKLKA 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + +V NF++P  AE+Y+HRIGRTGRA   GKA +LV  ++   + 
Sbjct: 300 LVATDIAARGLDIDQLPYVVNFELPQVAEDYVHRIGRTGRAAATGKAISLVCVDEHGLLA 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            IE+L+++++  L  +    +P ++   +    H +  N  P++S+G
Sbjct: 360 DIERLLKREIPRLALEGYDPDPSIKAAPL----HKKPKNNAPRRSSG 402


>gi|313890723|ref|ZP_07824348.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120824|gb|EFR43938.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 538

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/371 (39%), Positives = 231/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               K R    + + L++ PTRELA Q  +   ++G++  + V  + GG   + Q K L+
Sbjct: 61  N---KIRTDENIIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGASIDKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L ++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F++NP+ +++     T   +E  +V    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPAPIKQIGVKFMKNPEHVQIKNKELTNVNVEQYYVRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   + ++V
Sbjct: 236 V-DQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI +V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISNVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKQMKPL 365


>gi|152972086|ref|YP_001337232.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956935|gb|ABR78965.1| cold-shock DeaD box ATP-dependent RNA helicase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 643

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 144/379 (37%), Positives = 234/379 (61%), Gaps = 10/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     +R P+ L+L PTRELA QVA+   ++ K+   + V  L GG  ++ Q + L +
Sbjct: 68  ID---PELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   Y    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDLSS 377
              KL   +V+  N +L S
Sbjct: 362 RTMKLTIPEVELPNAELLS 380


>gi|319404441|emb|CBI78044.1| ATP-dependent RNA helicase [Bartonella rochalimae ATCC BAA-1498]
          Length = 415

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 156/370 (42%), Positives = 229/370 (61%), Gaps = 8/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +LGLS  +V  +  AG  KP  IQ K IP++L+ HD+ GIAQTG+GKT +F LP+L  
Sbjct: 9   FTELGLSSILVKNLFSAGMNKPKFIQAKAIPVMLKGHDILGIAQTGSGKTLAFSLPILNR 68

Query: 62  ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL  G  R  +  R LIL PTRELA Q+ +      K  +L+  L++GG+    Q +++ 
Sbjct: 69  ILTLGDKRYPKTARALILVPTRELAIQIEEAISAVAKGTHLSTCLIVGGMSRLIQIRRMA 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+LI TPGR++D      + ++     ++DEADRMLDMGFI  ++ I + +    QT
Sbjct: 129 KGVDILIATPGRLMDLIRSKYVDLSQSRFFILDEADRMLDMGFISDVRQIANFLHEKCQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ E+  +++N L+ P +IEV +  +TA  I           S+K ++L +LL 
Sbjct: 189 ALFSATMSKEVNVLADNLLRKPVKIEVVSQGTTAAEITQVLYCV--STSEKKSILSKLL- 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   + + I+F   K    ++  SL K G+SV  IHGN  Q +R   L NF+EG ++++V
Sbjct: 246 TNPALTSVIVFIRTKHGADSVARSLAKTGYSVATIHGNKSQNARQCALKNFREGLVRVLV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID-- 358
           A+D+AARG+DIP + HV N+D+P+ AE+Y+HRIGRTGR G  G A TL   E I+ +   
Sbjct: 306 ATDIAARGIDIPGISHVINYDLPDNAESYVHRIGRTGRNGASGYAITLF-DEKIEQVRLC 364

Query: 359 AIEKLIEKKV 368
           AIE+LI  K+
Sbjct: 365 AIERLIRMKL 374


>gi|303238786|ref|ZP_07325318.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302593665|gb|EFL63381.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 381

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 153/371 (41%), Positives = 229/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  L +   ++ A+ + GY  PT IQ + IP++L+  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MDFEKLNIITPILKAICEEGYTTPTLIQQQAIPVILEGRDLLGCAQTGTGKTAAFAIPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L K R  +   R+ + LIL PTRELA Q+ ++ E YG+   +  A++ GG+    Q  
Sbjct: 61  QTLYKERTNLKGQRIVKGLILTPTRELAIQIGESLEAYGRYTGIKHAVIFGGVSQVPQVN 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+++ TPGR+LD  N+  + ++ +++L++DEADRMLDMGF   ++ I S +  T
Sbjct: 121 KLRSGVDIIVATPGRLLDLMNQKYINVSCLKMLILDEADRMLDMGFSFDVKKIISRLTDT 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM  E+ K+ +  L+NP ++EV   SST +TIE      Y    K    L  
Sbjct: 181 RQTLLFSATMPKEITKMVDAILKNPVKVEVTPVSSTVDTIEQ---NVYFVEQKDKKSLLI 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L     +++ ++F   K     +   L K   +  AIHG+  Q +R   L+NFK    +
Sbjct: 238 KLLKNRAIESVLVFTRTKHGADKIAKDLAKLSITAQAIHGDKSQVARQIALNNFKLKRTR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++ H+ NFD+PN  E Y+HRIGRTGRAG  G A +   +E++ ++
Sbjct: 298 VLVATDIAARGIDIQELSHIINFDLPNVPETYVHRIGRTGRAGMVGTALSFCDREEMGYL 357

Query: 358 DAIEKLIEKKV 368
            AI+KLI KK+
Sbjct: 358 RAIQKLISKKI 368


>gi|166711384|ref|ZP_02242591.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 634

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 146/373 (39%), Positives = 228/373 (61%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV + GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 11  FADLGLSGAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
            +  + +   P+ L+L PTRELA QVA+ F+KY +      V  + GG P+  Q   L+R
Sbjct: 71  ADLNQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P  + +   ++T+ +I   +   +     K   L ++L+ 
Sbjct: 188 LFSATMPPAIRRIAQTYLKDPVEVTIAAKTTTSASIRQRY--WWVNGLHKLDALTRILEV 245

Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   IIF   K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++
Sbjct: 246 EPFDGM---IIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDIL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A   V   +   + +
Sbjct: 303 VATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTPREKGMLRS 362

Query: 360 IEKLIEKKVDWLN 372
           IE+   + ++ + 
Sbjct: 363 IERATRQPIEEMQ 375


>gi|296283706|ref|ZP_06861704.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354]
          Length = 461

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 152/375 (40%), Positives = 221/375 (58%), Gaps = 8/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS  V+ A+   GY +PTPIQ + IP VL+  D+ GIAQTGTGKTA+F+LP +  
Sbjct: 4   FTDLGLSQPVLQALDMKGYSEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSIDR 63

Query: 63  LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L +   +   +  R L+L PTRELA Q+A + + YG    L V  ++GG        KL 
Sbjct: 64  LREAENQTPFKSCRMLVLAPTRELAGQIAQSAKDYGALAGLKVQSIVGGTSVNKDRNKLH 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+LD  ++    ++ +EILV+DEAD+MLD+GFI  ++ I  L P TRQT
Sbjct: 124 RGTDILVATPGRLLDLIDQRAFTLDKVEILVLDEADQMLDLGFIHALRKINELTPKTRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   ++ +   + +NP ++ V   S+TAE IE        Q  +K +LL+ +L 
Sbjct: 184 LFFSATMPKAIKDLVSQYCRNPAQVSVTPESTTAERIEQFLF--MVQQDEKQSLLELILS 241

Query: 241 SQ----DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +      ++  ++F   K     +   L + G    AIHGN  Q  R + L  FK    
Sbjct: 242 GRHEIPGKLERVLVFARTKHGCDRVVKKLAQVGIPANAIHGNKSQPQRERALDEFKRAKT 301

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DIP V HV N+++PN  E Y+HRIGRT RAG  G A    A+++ ++
Sbjct: 302 PVLVATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGADGIAIAFCAEDERQY 361

Query: 357 IDAIEKLIEKKVDWL 371
           +  I K  + + + L
Sbjct: 362 LKDIRKTTDAEFERL 376


>gi|296270955|ref|YP_003653587.1| DEAD/DEAH box helicase domain-containing protein [Thermobispora
           bispora DSM 43833]
 gi|296093742|gb|ADG89694.1| DEAD/DEAH box helicase domain protein [Thermobispora bispora DSM
           43833]
          Length = 618

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 148/348 (42%), Positives = 209/348 (60%), Gaps = 2/348 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+ P++  A+   G V P PIQ   +PL L   D+ G A+TGTGKT +F +P L +
Sbjct: 10  FRDLGVIPEIADALETEGIVTPFPIQEMALPLALSGQDIIGQARTGTGKTYAFGIPTLQL 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + K R   + PR LIL PTRELA QV ++           +  + GG  +E Q + L+ G
Sbjct: 70  IGKPRKNRKKPRGLILAPTRELALQVTEDLVLAAGKLGTRITTVYGGRAYEPQIEALKNG 129

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR+LD  N+  L ++ I ILV+DEADRMLD+GF+P I+ I  L+P  RQT+L
Sbjct: 130 VDVVVGTPGRLLDLVNQKHLDLSQIAILVLDEADRMLDLGFLPDIERIIKLLPEKRQTML 189

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCALLQQLLQS 241
           FSATM  E+  +S  +L  P  I        AET        Y  +   K  +L ++LQS
Sbjct: 190 FSATMPGEIVALSRRYLNRPTHIRAEIAEIEAETKPRTTQFVYRTHRMDKIEILARVLQS 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + +   ++FC  K+    + + L  +GF+V A+HG++ Q  R + L  F+ G I ++VA
Sbjct: 250 TE-LTLAMVFCETKRACDMVANQLRDRGFAVAAVHGDLSQSQREQALRAFRNGKINVLVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +D+AARG+D+ DV HV N+D+P   + YIHRIGRTGRAGR G A T V
Sbjct: 309 TDVAARGIDVDDVTHVINYDLPQDEKTYIHRIGRTGRAGRSGVAITFV 356


>gi|295680824|ref|YP_003609398.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
 gi|295440719|gb|ADG19887.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 481

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 154/368 (41%), Positives = 223/368 (60%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  V D  Y  PTP+Q K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIDPLLRNVQDLNYQIPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLL 60

Query: 61  T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             ++++G A      R L+L PTRELA QV  +F  YG+  +L      GG+    Q  K
Sbjct: 61  QRLVQRGPAVSSNRARVLVLVPTRELAEQVLQSFIAYGRGLDLRFLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT TD+++ ++ N L+ P  I V+ P++TA  I+   V        K  L   L
Sbjct: 181 QTLLFSATFTDDIRAMAANILRGPVNISVSPPNATASRIKQWVVPV--DKKNKPDLFMHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +++  ++ ++F   +  V  L   L++ G++V  IHG+  Q +R++ L  FK G +Q+
Sbjct: 239 V-AENGWQHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKAGEVQM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEK 366
           AIE LI +
Sbjct: 358 AIEALIRQ 365


>gi|238896669|ref|YP_002921414.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae NTUH-K2044]
 gi|329997852|ref|ZP_08302922.1| cold-shock DEAD-box protein A [Klebsiella sp. MS 92-3]
 gi|238548996|dbj|BAH65347.1| cold-shock DeaD box ATP-dependent RNA helicase [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|328538887|gb|EGF64951.1| cold-shock DEAD-box protein A [Klebsiella sp. MS 92-3]
          Length = 659

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 144/379 (37%), Positives = 234/379 (61%), Gaps = 10/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 24  FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNN 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     +R P+ L+L PTRELA QVA+   ++ K+   + V  L GG  ++ Q + L +
Sbjct: 84  IDP---ELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQ 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 141 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   Y    +K   L + L++
Sbjct: 201 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGM--RKNEALVRFLEA 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 259 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 318 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 377

Query: 359 AIEKLIEKKVDWLNGDLSS 377
              KL   +V+  N +L S
Sbjct: 378 RTMKLTIPEVELPNAELLS 396


>gi|198282877|ref|YP_002219198.1| DEAD/DEAH box helicase domain-containing protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666755|ref|YP_002425078.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247398|gb|ACH82991.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518968|gb|ACK79554.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 617

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 144/363 (39%), Positives = 224/363 (61%), Gaps = 7/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  L+  +  AV + GY +P+PIQ ++IP +L+  DV G+AQTGTGKTA+F LP+L
Sbjct: 7   LRFIDFALAEPIQKAVTEIGYEQPSPIQAQSIPPLLEGRDVIGLAQTGTGKTAAFALPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           + ++ G   +R P+ L+L PTRELA QVA+  + Y K      V  + GG     Q K+L
Sbjct: 67  SRVDLG---LRAPQLLVLAPTRELAIQVAEAMQSYAKFLPGFHVLPIYGGQAMTLQLKQL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGRI DH  R  L +++++ +V+DEAD ML MGFI  +++I    P  RQ
Sbjct: 124 QRGVQVVVGTPGRIQDHLRRKTLRLDHLQAVVLDEADEMLRMGFIDAVEDILKHTPEGRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM D ++++++ +L+NP  I + + ++T   I   +      +  K   L ++L
Sbjct: 184 VALFSATMPDAIRRIAKTYLRNPLEIRIKSATTTVAAIRQRYWQVSGTH--KLDALTRIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +++    ++F   K   V L   LE +G++  A++G++ Q  R + +   K GT+ ++
Sbjct: 242 EVEES-NAWLVFVRTKTATVELAERLEARGYACGALNGDLSQAMREQTIERLKAGTLDIV 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+PN  E Y+HRIGRTGRAGR G A   VA  +   + A
Sbjct: 301 VATDVAARGLDVDRISHVINYDIPNDTEAYVHRIGRTGRAGRTGDAILFVAPRERHLLHA 360

Query: 360 IEK 362
           IE+
Sbjct: 361 IER 363


>gi|271961946|ref|YP_003336142.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021]
 gi|270505121|gb|ACZ83399.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021]
          Length = 561

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 153/397 (38%), Positives = 227/397 (57%), Gaps = 21/397 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P+++ A+   GY +PTPIQ + IP +L+  D+ G A TGTGKTA+F LP+L  
Sbjct: 12  FADLTLRPELLHALSGLGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAAFALPVLQR 71

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + +       P  L+L PTRELA QV++ F  YG+     V  + GG P   Q + L++G
Sbjct: 72  MTRDGGGGE-PMALVLVPTRELAVQVSEAFHHYGRELGARVLPIYGGQPIGRQLRALQQG 130

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR LDH  RG L ++++E++V+DEAD MLDMGF   I+ I    P  RQT+L
Sbjct: 131 VDIVVATPGRALDHIGRGTLRLDDLEMVVLDEADEMLDMGFAEDIEAILQETPENRQTVL 190

Query: 183 FSATMTDELQKVSENFLQNPKRIEVN----TPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           FSATM   +  ++   L +P RIE+      P       +  +V   A    K A L ++
Sbjct: 191 FSATMPPRINGIARRHLNDPVRIEMGRETTAPGEAPLVRQTAYVVPRAH---KPAALGRV 247

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +      I+FC  +  V  L  +L  +G+   A+HG + Q  R +++   + GT  L
Sbjct: 248 LDVE-APTAAIVFCRTRDEVDQLTETLNGRGYRAEALHGGMGQEQRDRVMGRLRTGTADL 306

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV N+DVP+  E+Y+HRIGR GRAGR G A TL    + + + 
Sbjct: 307 LVATDVAARGLDIEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLK 366

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
            IE++ ++++            P+EK+       AR+
Sbjct: 367 TIERVTKRRI------------PIEKVPTIADLRARR 391


>gi|110598397|ref|ZP_01386670.1| Helicase-like:DbpA, RNA-binding:DEAD/DEAH box helicase-like
           [Chlorobium ferrooxidans DSM 13031]
 gi|110340006|gb|EAT58508.1| Helicase-like:DbpA, RNA-binding:DEAD/DEAH box helicase-like
           [Chlorobium ferrooxidans DSM 13031]
          Length = 598

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 228/371 (61%), Gaps = 7/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  L L+  ++ A+ + GY  PTPIQ +TIPL+L+  DV G AQTGTGKTA+F LP+L+
Sbjct: 10  DFRSLQLAEPLMQALEEVGYENPTPIQAETIPLLLEGRDVLGQAQTGTGKTAAFALPVLS 69

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            +   R  +  P+ L+L PTRELA QVA+ F++Y  +     V  + GG  +  Q + L+
Sbjct: 70  NI---RLALAEPQALVLAPTRELAIQVAEAFQRYAVHLKGFHVVPIYGGQDYGIQLRMLK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG L +++++ LV+DEAD ML MGFI  ++ I    P  RQ 
Sbjct: 127 RGVHVVVGTPGRVMDHMRRGSLNLDSLQCLVLDEADEMLRMGFIDDVEWILDQTPKDRQV 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++++++ +L NP ++ + T ++T ETI   +       S K  +L ++L+
Sbjct: 187 ALFSATMPSAIRRIAQKYLNNPAQVTIQTKTTTVETIRQRYWIVGG--SHKLDILTRILE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      +IF   K   + L   L+ +G+   A++G++ Q  R + +   K G + +++
Sbjct: 245 VE-PFDGILIFVRTKTMTIELAEKLQARGYGAAALNGDMAQNQRERTVDQLKNGALSIVI 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  +   + AI
Sbjct: 304 ATDVAARGLDVERISHVINYDIPSDTESYVHRIGRTGRAGRTGDAILFVSPREKNMLYAI 363

Query: 361 EKLIEKKVDWL 371
           EK    +++ +
Sbjct: 364 EKATHSRIELM 374


>gi|194477246|ref|YP_002049425.1| putative ATP-dependent RNA helicase [Paulinella chromatophora]
 gi|171192253|gb|ACB43215.1| putative ATP-dependent RNA helicase [Paulinella chromatophora]
          Length = 631

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 230/371 (61%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD GL+ +++ AV + GY +P+PIQ   IP ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 63  FADFGLNAEILQAVTEKGYKQPSPIQAAAIPELMLGRDLVGQAQTGTGKTAAFALPLLAR 122

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ L+L PTRELA QVAD+F  Y  +  ++ V  + GG  F  Q  +L+R
Sbjct: 123 MDPDQ---RSPQVLVLAPTRELAVQVADSFSTYAAHLPHIRVLPVYGGADFRDQINRLKR 179

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  +G L ++ + +LV+DEAD ML MGFI  ++ I   +P  RQ +
Sbjct: 180 GIQVVVGTPGRVMDHMRQGTLDLSGLRVLVLDEADEMLRMGFIDDVEWIIEQLPKQRQVV 239

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++S N+L NP  I +    S A  I   ++  +A +  K   L ++L++
Sbjct: 240 LFSATMPTEIRRISLNYLNNPAEITIRQKGSDASRIRQRYLMVHAPH--KLEALNRVLEA 297

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T +  IIF   K   V +  SLE  G  V  ++G++ Q  R + +   ++G+I ++VA
Sbjct: 298 E-TGEGVIIFGRTKAITVTIAESLELTGHDVAVLNGDVAQSQRERTIERLRKGSINILVA 356

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V  V N+D+P  +E Y+HRIGRTGRAGR G A   +   + + +  +E
Sbjct: 357 TDVAARGLDVDRVSLVINYDIPFDSEAYVHRIGRTGRAGRTGDAILFLTPRERRFLGGLE 416

Query: 362 KLIEKKVDWLN 372
           + + + ++ ++
Sbjct: 417 RAVGRPIEPMD 427


>gi|73540622|ref|YP_295142.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72118035|gb|AAZ60298.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 632

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 151/386 (39%), Positives = 226/386 (58%), Gaps = 21/386 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   ++ A+ +  Y  PTP+Q + IP  L   D+   +QTG+GKTA+F+LP +  
Sbjct: 53  FATLGLDAAILRALSELNYNNPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQR 112

Query: 63  LEKGRARVR------------------MPRTLILEPTRELAAQVADNFEKYGKNYNLTV- 103
           + +  A  R                   P  L+L PTRELA QV +   KYG+N    V 
Sbjct: 113 ISEKPATNRPTEPAKRMKGKRPRPSPAQPSLLVLTPTRELALQVTEAAAKYGRNLRRIVC 172

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163
           A ++GG+P+  Q   L +  D+L+ TPGR+LDH + G++ ++ +++LV DEADRMLDMGF
Sbjct: 173 ASILGGMPYPKQLAALSKMPDILVATPGRLLDHISAGRIDLSALDMLVFDEADRMLDMGF 232

Query: 164 IPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
              I  I    P +RQTL+FSAT+   + +++   L++P+RIE+    +    IE     
Sbjct: 233 ADDIDAIVDATPASRQTLMFSATLDARIAQLASRQLKDPQRIEIAAARADQSHIEQRLHF 292

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
           T    S K  LL  LL+   T+K  I+F   K++  +L   L   GF+  A+HG++ Q +
Sbjct: 293 T-DDMSHKERLLDHLLRDA-TLKQAIVFTATKRDADSLAERLSDTGFAAGALHGDMTQGA 350

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L+  + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR G
Sbjct: 351 RNRTLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSG 410

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVD 369
            A  LV   D      IE+    ++D
Sbjct: 411 VAINLVNHNDTFQWKRIERFTNNRID 436


>gi|237735417|ref|ZP_04565898.1| ATP-dependent RNA helicase RhlE [Mollicutes bacterium D7]
 gi|229381162|gb|EEO31253.1| ATP-dependent RNA helicase RhlE [Coprobacillus sp. D7]
          Length = 418

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 149/351 (42%), Positives = 221/351 (62%), Gaps = 6/351 (1%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRT---LI 77
           Y  P+PIQ + IP ++   D+ G A+TGTGKTA+F LP+L  L       + PRT   LI
Sbjct: 3   YDIPSPIQEQAIPAIISGRDIFGCAKTGTGKTAAFALPILQKLYLRDESEKYPRTIKALI 62

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           L PTRELA Q+ + FE      NL  A++ GG+   +Q  K+ RG DVLI TPGR++D +
Sbjct: 63  LAPTRELAIQINETFEAMNPQVNLKSAVIFGGVRQGSQVTKINRGIDVLIATPGRLIDLY 122

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
           N+G + + ++E LV+DEADRMLDMGFI  I+ I   +P   QT+LFSAT+ DE++ +  +
Sbjct: 123 NQGLVDLKHVEYLVLDEADRMLDMGFIKDIRKILRFIPRRHQTMLFSATLPDEIKHLVSD 182

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
            L +P +I +++ + T E I       +     K  LL +LL++   + N I+F   K+N
Sbjct: 183 LLNDPLKIMISSGNVTVEKINQSLY--FVDKVNKAKLLIKLLENPQ-IYNAIVFVRTKRN 239

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
           V  LC  L K   +   IHG+  Q +R++ L+NFK   ++++VASD+AARG+DI ++ HV
Sbjct: 240 VDTLCKKLIKAQITCEGIHGDKSQNARVRALNNFKNDKVRVLVASDIAARGIDIDELTHV 299

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            NFD+P++AENY+HRIGRT RAG  G+A T  + ++   +  I+K I + +
Sbjct: 300 INFDLPDQAENYVHRIGRTARAGASGEAITFCSFQEKALLKDIQKFINQDI 350


>gi|330446057|ref|ZP_08309709.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490248|dbj|GAA04206.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 426

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 159/390 (40%), Positives = 226/390 (57%), Gaps = 21/390 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF----- 55
           M F  L L P ++ A+++ GY  PT +Q + IPL L+  DV   AQTGTGKTA+F     
Sbjct: 1   MSFESLNLHPNLLKALVELGYSSPTDVQKQAIPLALKGEDVMAGAQTGTGKTAAFSLPLL 60

Query: 56  ---------VLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                               +A     R LIL PTRELA QV D+   Y K  +L VA+ 
Sbjct: 61  QRLLTLPSQSEQSAESSTDSKASGHPIRALILTPTRELAQQVFDSMSAYAKYTDLKVAVA 120

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIP 165
            GG     Q K +  GAD+L+ TPGR+LDH FNR  + +  IE  V+DEADRMLDMGFI 
Sbjct: 121 YGGTSMNVQVKAINAGADILVATPGRLLDHVFNR-SVSLTEIETFVLDEADRMLDMGFIV 179

Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
            IQ I   +P  RQTL FSAT + +++K++ + L  PK +EV   ++ AET+E       
Sbjct: 180 DIQRIMKRMPDERQTLFFSATFSKQVKKLAFDILTEPKMVEVTPANTAAETVEQMVYPV- 238

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
               +K  LL  L+ S++  +  ++F   K+    L   L   G    +I+G+  Q +R 
Sbjct: 239 -DKHRKAELLAYLIGSRN-WQQVLVFTKTKQGSDKLAKDLGLDGIKAVSINGDKSQGARQ 296

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L  FK G ++++VA+D+AARGLDI  +G+V NFD+P +AE+Y+HRIGRTGRAG  G A
Sbjct: 297 RALDEFKSGKVRVLVATDVAARGLDIEQLGYVVNFDMPYKAEDYVHRIGRTGRAGMTGHA 356

Query: 346 FTLVAKEDIKHIDAIEKLIEKKV--DWLNG 373
            TL++ ++   + AIE+L++ ++   WL G
Sbjct: 357 ITLMSLDEEWALKAIEELLDTRIPQQWLEG 386


>gi|262042721|ref|ZP_06015875.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039946|gb|EEW41063.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 634

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 144/379 (37%), Positives = 234/379 (61%), Gaps = 10/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 24  FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNN 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     +R P+ L+L PTRELA QVA+   ++ K+   + V  L GG  ++ Q + L +
Sbjct: 84  IDP---ELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQ 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 141 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   Y    +K   L + L++
Sbjct: 201 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGM--RKNEALVRFLEA 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 259 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 318 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 377

Query: 359 AIEKLIEKKVDWLNGDLSS 377
              KL   +V+  N +L S
Sbjct: 378 RTMKLTIPEVELPNAELLS 396


>gi|256848375|ref|ZP_05553818.1| autoaggregation-mediating protein [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714973|gb|EEU29951.1| autoaggregation-mediating protein [Lactobacillus coleohominis
           101-4-CHN]
          Length = 500

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 146/384 (38%), Positives = 235/384 (61%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS  ++ AV  +GY + TPIQ +TIP+VL+  DV G AQTGTGKTA+F LP++
Sbjct: 13  LKFGELGLSKSLLRAVKQSGYEEATPIQAQTIPMVLKGQDVIGQAQTGTGKTAAFGLPII 72

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    +++ PTRELA Q  +   + G + ++ V ++ GG     Q   L+
Sbjct: 73  EHIDLDNPAIQ---AIVISPTRELAIQTQEELYRLGHDKHVKVQVVYGGADIRRQINSLK 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGR+ DH +RG + + +I+ LV+DEAD ML+MGF+  I+ I    P  RQT
Sbjct: 130 KHPQILVGTPGRLRDHISRGTVNLEHIQTLVLDEADEMLNMGFLDDIEAIIKETPEKRQT 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++++   F+++P+ +++     T + ++  +V   A+  +K  ++ +L+ 
Sbjct: 190 LLFSATMPPEIKRIGVQFMRDPQMVKIKAKELTTDLVDQYYVR--AKDYEKFDIMTRLID 247

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     I+F   K+ V  L   L  +G++   IHG++ Q  R KI+  FK G + ++V
Sbjct: 248 VQDPDLT-IVFGRTKRRVDELSRGLVARGYNAAGIHGDLTQDRRSKIMKKFKNGDLDILV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P+  ++Y+HRIGRTGRAG HG + T V   ++ ++  I
Sbjct: 307 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEI 366

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           EKL   +       +  L PP E+
Sbjct: 367 EKLTRVR-------MLPLKPPTEE 383


>gi|172065244|ref|YP_001815956.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171997486|gb|ACB68403.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 477

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 154/366 (42%), Positives = 225/366 (61%), Gaps = 5/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  + D  Y  PTP+Q+K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIAPLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALPLL 60

Query: 61  T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             ++++G A      R L+L PTRELA QV  +F  YGK  +L      GG+    Q  K
Sbjct: 61  QRLVQQGPAVSSNRARVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + +E LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPVQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT TD+++ ++ + L++P  I V+ P+ TA  I+  +V T  + +K    +   
Sbjct: 181 QTLLFSATFTDDIRTMAASILRSPVNISVSPPNVTASKIKQ-WVVTVDKRNKPDLFMH-- 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +++   + ++F   +  V  L   L++ G++V  IHG+  Q +R++ L  FK G +Q+
Sbjct: 238 LVAENNWDHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLI 364
           AIE LI
Sbjct: 358 AIEALI 363


>gi|149184|gb|AAA61345.1| RNA helicase [Klebsiella pneumoniae]
          Length = 659

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 144/379 (37%), Positives = 234/379 (61%), Gaps = 10/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 24  FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNN 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     +R P+ L+L PTRELA QVA+   ++ K+   + V  L GG  ++ Q + L +
Sbjct: 84  IDP---ELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQ 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 141 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   Y    +K   L + L++
Sbjct: 201 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGM--RKNEALVRFLEA 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 259 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQALERLKDGRLDILIA 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 318 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 377

Query: 359 AIEKLIEKKVDWLNGDLSS 377
              KL   +V+  N +L S
Sbjct: 378 RTMKLTIPEVELPNAELLS 396


>gi|194333556|ref|YP_002015416.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris
           aestuarii DSM 271]
 gi|194311374|gb|ACF45769.1| DEAD/DEAH box helicase domain protein [Prosthecochloris aestuarii
           DSM 271]
          Length = 607

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 221/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L+  V+ A+   GY  PTPIQ++TIP +LQ  DV G AQTGTGKTA+F LP+L+ 
Sbjct: 33  FRDLELAAPVIEALDKVGYENPTPIQLQTIPYILQGRDVLGQAQTGTGKTAAFALPILSR 92

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +     P+ L+L PTRELA QVA+ F++Y     +  V  + GG  +  Q K+L+R
Sbjct: 93  IDCDK---NYPQALVLTPTRELAIQVAEAFQRYAACMPDFHVLPIYGGQDYAGQLKRLKR 149

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  R  L ++ +  LV+DEAD ML MGF+  ++ I    P +RQ  
Sbjct: 150 GVHVVVGTPGRVIDHIKRSSLKLDKLHTLVLDEADEMLRMGFVDDVEWILEQTPASRQVA 209

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   + +++   L +P  I + + SST + I   F+   A +  K   L ++L++
Sbjct: 210 LFSATMPSVILRIARKHLSDPAEITIKSKSSTVDAITQRFLTVGAHH--KLEALTRILEA 267

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      IIF   +    +L   L  +G++  A+ G + Q  R K +   K G + ++VA
Sbjct: 268 E-PFDGVIIFVRTRTATQDLSEKLRARGYAAAALSGEMVQHQREKTIDQLKNGKLNIIVA 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HV N+D+P+  E+Y+HRIGRTGRAGR G A   V   ++  +  IE
Sbjct: 327 TDVAARGLDVERVTHVINYDIPSDTESYVHRIGRTGRAGRSGDAILFVTSREMSMLRTIE 386

Query: 362 KLIEKKVDWLN 372
           + + + +D + 
Sbjct: 387 RAVRRSIDRME 397


>gi|254497847|ref|ZP_05110613.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
 gi|254352925|gb|EET11694.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
          Length = 584

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 149/372 (40%), Positives = 229/372 (61%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA    S  +  A+ D  +  P+PIQ +TIPL L+  D   +AQTGTGKTA+F LP   
Sbjct: 7   NFASFNFSDAINQALEDMKFTTPSPIQTQTIPLFLEGRDAIALAQTGTGKTAAFALP--- 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
           IL+K     +  + LIL PTRELA QVA+ FE    + +   VA L GG  +  Q K+L 
Sbjct: 64  ILQKITPNGQGTQALILAPTRELAIQVAEQFELLSARQHGTKVATLCGGQEYGRQLKQLR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRILDH  +G L ++N+   ++DEAD ML MGFI  I+ I + +P  +Q 
Sbjct: 124 AGAQIVVGTPGRILDHIEKGTLQLSNLRTFILDEADEMLRMGFIEDIETIMAKLPEQKQI 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   +++++  +L NP  IE+ + ++T ++IE  F+  +A   +K   L ++L 
Sbjct: 184 GLFSATMPHRIRQIANTYLNNPASIEIRSETATVKSIEQRFL--FASGHQKPDALVRVLA 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  I+F   K +   +   L++QG    AIHG+I Q  R +I++ F++G I ++V
Sbjct: 242 VEE-YQGVIVFVRTKSSTEEVAELLQQQGLRAMAIHGDITQALRERIIAQFRQGAIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV N+D+P+  E Y+HRIGRTGRAGR G A   V  ++ + I ++
Sbjct: 301 ATDVAARGLDVERVTHVINYDLPHDNETYVHRIGRTGRAGRSGVAILFVTPKESRLISSV 360

Query: 361 EKLIEKKVDWLN 372
           E+   +++  +N
Sbjct: 361 ERHTRQRITKVN 372


>gi|300704701|ref|YP_003746304.1| DEAD/DEAH box helicase [Ralstonia solanacearum CFBP2957]
 gi|299072365|emb|CBJ43703.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
           RNA helicase(C-terminal) (rhlE-like) [Ralstonia
           solanacearum CFBP2957]
          Length = 603

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 148/385 (38%), Positives = 230/385 (59%), Gaps = 23/385 (5%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LGL  ++V A+ +  Y  PTP+Q + IP  L   D+   +QTG+GKTA+F+LP +  + +
Sbjct: 35  LGLDERIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQRISE 94

Query: 66  G-------------RARVRMPRT-------LILEPTRELAAQVADNFEKYGKNYNLTV-A 104
                         R + R PR        L+L PTRELA QV     +YG++    V A
Sbjct: 95  QPEPQRPRMDGAPQRVKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRRIVCA 154

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
            ++GG+P+  Q   L R  D++I TPGR+LDH + G++ ++ +++LV DEADRMLDMGF 
Sbjct: 155 SILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFA 214

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
             I+ I    P +RQ L+FSATM   +++++E  ++ P+RIE+         IE     T
Sbjct: 215 DDIEAIVGATPESRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARVDQSNIEERLHFT 274

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
               S K  LL  LL+   ++K  I+F   K++  +L   L + GF+  A+HG++ Q +R
Sbjct: 275 -DDMSHKQQLLDHLLRDA-SLKQAIVFTATKRDADSLAERLTETGFAAGALHGDMHQGAR 332

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + L+  + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR G 
Sbjct: 333 NRTLTALRRGHLRILVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGI 392

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVD 369
           A  LV   D      IE+ ++++++
Sbjct: 393 AINLVNHGDTFQWRRIERFVDRRIN 417


>gi|91201974|emb|CAJ75034.1| similar to ATP-independent RNA helicase DbpA [Candidatus Kuenenia
           stuttgartiensis]
          Length = 449

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/369 (39%), Positives = 226/369 (61%), Gaps = 8/369 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F     +  +V  +   GYV PTPIQ++ IPL+L+  DV G+AQTGTGKTA+FVLP+L 
Sbjct: 3   NFQTFNFNSNIVAGIKSVGYVTPTPIQLQAIPLILEGTDVMGLAQTGTGKTAAFVLPILH 62

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L +G R ++R    L++ PTRELA QV  +F+  G   +L    + GG+    Q  +L 
Sbjct: 63  RLMQGERGKIR---ALVIVPTRELAEQVLQDFKTLGSKTSLRSISIYGGVSITQQINRLR 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G ++++  PGR+LDH  +  + ++ +E+LV+DEAD M DMGF+P I+ I   +   RQT
Sbjct: 120 SGVEIVVACPGRLLDHMKQRTIELSRVEVLVLDEADHMFDMGFLPDIRKIIKCLSHKRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM DE++K+++  L  P  +++   ++ A T++H       +   K  LL ++LQ
Sbjct: 180 LLFSATMPDEIRKLAQEALTKPVTVQLG-KTAPASTVKHALYP--VKQHLKIPLLLKILQ 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             DT ++ +IF   K    +L   L + G+   +  GN+ Q  R   L  F+ G  Q++V
Sbjct: 237 HTDT-QSVLIFTRTKYRAKSLGDRLIRAGYKATSFQGNLSQPQRQAALGGFRNGAYQILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + HV N+D+P+  E Y+HRIGRTGRA R G AFTLV ++D   +  I
Sbjct: 296 ATDIAARGIDISQISHVINYDIPDTPEAYVHRIGRTGRAARTGDAFTLVTEDDKAMVRGI 355

Query: 361 EKLIEKKVD 369
           E ++  +++
Sbjct: 356 ENILGSRIE 364


>gi|119773652|ref|YP_926392.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
 gi|119766152|gb|ABL98722.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
          Length = 637

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 146/367 (39%), Positives = 229/367 (62%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL+  V+ A+ + GY  PTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L  
Sbjct: 8   FRELGLTESVLRALDELGYETPTPIQAASIQPLMSGQDILGQAQTGTGKTGAFALPLLCS 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++   A +  P+ L+L PTRELA QVA+ F  Y K+     V  + GG     Q + L R
Sbjct: 68  VD---ANLNAPQILVLAPTRELAVQVAEAFTSYAKHMKGFHVLPIYGGQSMYQQLQALRR 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L ++ ++ LV+DEAD ML MGFI  I+ I    P +RQ  
Sbjct: 125 GPQVVVGTPGRVMDHMRRGTLKLDTLKALVLDEADEMLKMGFIDDIEWILEHTPESRQLA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +++++V+   L+NP  I +    +T E+IE  FV   +Q++K  AL++ +L+ 
Sbjct: 185 LFSATMPEQIKRVANKHLRNPVNISIAASHTTVESIEQRFVQV-SQHNKLEALVR-VLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++T +  IIF   + + + L   LE +G++   +HG+++Q++R + +   K G + +++A
Sbjct: 243 ENT-EGIIIFVRTRNSCMELAEKLEARGYAASPLHGDMNQQARERAVDQLKSGKLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +GHV N+D+P   E Y+HRIGRTGRAGR G A   V   +++ +  IE
Sbjct: 302 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 361

Query: 362 KLIEKKV 368
           +    ++
Sbjct: 362 RATNSRI 368


>gi|68536452|ref|YP_251157.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
 gi|68264051|emb|CAI37539.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
          Length = 713

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 141/370 (38%), Positives = 230/370 (62%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   V+ AV   G+  P+PIQ +TIP++++ HDV G+AQTGTGKTA+F LP+L+ 
Sbjct: 76  FDGLGLPENVLAAVKKVGFEVPSPIQAETIPVLMEGHDVVGLAQTGTGKTAAFALPILSR 135

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ L+L PTRELA QVA++F+ + ++   + V  + GG  +  Q   L R
Sbjct: 136 IDVSK---RHPQALVLAPTRELALQVAESFQSFSEHLGGIHVLPIYGGQAYGVQLSGLRR 192

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  +G L ++ +  +V+DEAD ML+MGF   ++ I    P  +Q  
Sbjct: 193 GAHIVVGTPGRVIDHLEKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPSDKQVA 252

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++S+ +L +P+ I V     T+E IE  ++     +  K   L ++L+ 
Sbjct: 253 LFSATMPSGIRRLSKQYLSDPREITVKATQRTSENIEQDYL--LVSHRDKLDALTRILEI 310

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  I+F   K     L   L  +GF+  AI+G+I Q  R + +   K+G + ++VA
Sbjct: 311 TE-FEAMIMFVRTKNETEELAERLRARGFNAAAINGDIPQNLRERTVDQLKDGRLDILVA 369

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HVFN+D+P+  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 370 TDVAARGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAGRKGRAILFVTPRERRLLKSIE 429

Query: 362 KLIEKKVDWL 371
           +  + +++ +
Sbjct: 430 RATKSRLNEI 439


>gi|78184025|ref|YP_376460.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
 gi|78168319|gb|ABB25416.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
          Length = 458

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 155/369 (42%), Positives = 228/369 (61%), Gaps = 12/369 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L L  + V ++ ++GY+ PTPIQ  TIP VLQ  D+   AQTGTGKTA+F+LP++
Sbjct: 24  LTFEQLELCAETVRSIKESGYLSPTPIQALTIPEVLQGKDIMASAQTGTGKTAAFILPII 83

Query: 61  TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L  + + +     +L+L PTRELAAQV  + + Y K   L    + GG+    Q K+L
Sbjct: 84  ELLRAEDKPKRYQVHSLVLTPTRELAAQVEASAKAYTKYLALRSDAVFGGVSIRPQVKRL 143

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D+L+ TPGR+LD  N+  +  +N+++LV+DEADRMLDMGFI  I+ +   +P  RQ
Sbjct: 144 QGGVDILVATPGRLLDLINQKMIRFDNLKVLVLDEADRMLDMGFIRDIKKVIEYLPKNRQ 203

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++FSAT +  ++K++   L +P  I+ +  +  A TIEH  +      ++K  LL  L+
Sbjct: 204 NMMFSATFSTPIKKLALGLLNDPVEIKASVQNQAAPTIEH--LVHPCDMARKVDLLCHLI 261

Query: 240 QSQDTMKNGIIFCNQK----KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++ +  K  ++F   K    K V  LCH    Q     AIHGN  Q +R + L  FK G 
Sbjct: 262 KT-NKWKQVLVFARTKHGADKVVKILCH----QHMRASAIHGNKSQGARTRALEGFKNGD 316

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+AARG+DI  + +V N D+PN AE+Y+HRIGRTGRAG  G A +LVA E+  
Sbjct: 317 IKILVATDIAARGIDIHQLPYVINLDLPNVAEDYVHRIGRTGRAGEAGHAISLVAAEEAL 376

Query: 356 HIDAIEKLI 364
            + AIEK I
Sbjct: 377 LLKAIEKFI 385


>gi|223937455|ref|ZP_03629359.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
 gi|223893806|gb|EEF60263.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
          Length = 645

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 149/367 (40%), Positives = 233/367 (63%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGLS ++  A+   G+ + +PIQ + IP++LQ  DV G +QTG+GKTA+F +P +  
Sbjct: 6   FSELGLSAELQKAIDKMGFEQASPIQAEAIPVLLQGRDVVGQSQTGSGKTAAFAVPAI-- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLER 121
            EK   + R  + LIL PTRELA QV++   K         AL I GG  +E Q   L +
Sbjct: 64  -EKVDPQNRSVQILILCPTRELAVQVSEEVHKLSIFKRGIHALPIYGGQSYERQFMGLRQ 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA ++I TPGR++DH  RG L ++ ++++++DEAD MLDMGF   I+ I   VP  RQT+
Sbjct: 123 GAQIVIGTPGRVMDHMRRGTLRLDQVKMVILDEADVMLDMGFREDIEFILQAVPTERQTV 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   +Q++ + + ++P+ + +   + T  T+E  F     ++  K  LL +L+  
Sbjct: 183 FFSATMPRPIQELIQKYARDPQSVRIEQKAMTVPTVEQFFYEVDRRF--KVELLTRLIDI 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D +K GI+FCN K+ V +L   L  QG+S   +HG++ Q  R ++++ F++  ++ +VA
Sbjct: 241 HD-LKLGIVFCNTKRMVDDLVDHLNAQGYSADRLHGDMSQAMRDRVMNKFRKSGLEFLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+D+P  AE+Y+HRIGRTGRAGR G+A + VA  ++  I  IE
Sbjct: 300 TDVAARGIDVDDVQVVFNYDLPYDAEDYVHRIGRTGRAGRSGRAISFVAGRELFQIQHIE 359

Query: 362 KLIEKKV 368
           +  + K+
Sbjct: 360 RFTKMKI 366


>gi|170726556|ref|YP_001760582.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169811903|gb|ACA86487.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 449

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 151/373 (40%), Positives = 226/373 (60%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ AV + GY  PTPIQ + IPL L+  ++   AQTG+GKTASFVLP+L
Sbjct: 1   MPFSKLGLSEPILNAVTELGYTTPTPIQAEAIPLALKGKNLIAAAQTGSGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L  G   R +  R L+L PTRELA QV  + E YGK+ NL    + GG+ +  Q + L
Sbjct: 61  ELLSAGETQRKKRARALVLTPTRELAVQVCKSIELYGKHLNLNAIAIYGGVDYAPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR+ D + +  +  +   +LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IDGVDIVVATPGRLRDLYTQRAIHFDETTLLVLDEADRMLDMGFIEDITKIIDTLPEQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT++ +++++++  + +  ++  N  +     IE     T     KK ALL  L+
Sbjct: 181 SLLFSATLSRQVRELAKETVCDAIQLSFNKENEAKPNIEQWI--TTVDKDKKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+     +IF   K     L   LEK+G     IH    Q  R +IL++FK G I+ +
Sbjct: 239 NEQN-WPQALIFIETKHGAAKLVSQLEKRGIEAECIHSGRTQAIREQILADFKSGKIRYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++ ++ARG+DI ++  V N+D+P  A+ Y+HRIGRTGRAG  G+A +LV+K+D K++  
Sbjct: 298 ISTGISARGIDIDELPLVINYDLPFPADEYVHRIGRTGRAGSAGEAISLVSKDDFKNLCM 357

Query: 360 IEK----LIEKKV 368
           IE     L+E++V
Sbjct: 358 IESRLNHLLERRV 370


>gi|24374114|ref|NP_718157.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24348604|gb|AAN55601.1|AE015698_9 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 475

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 150/372 (40%), Positives = 225/372 (60%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL   +V AV + GY  PTPIQ + IP +L   +V   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +  + R +  R++IL PTRELA QV  N  +Y K   LT   + GG+    Q K+L
Sbjct: 61  HRFADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + + +LV+DEADRMLDMGFI  I NI   +P  RQ
Sbjct: 121 IEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++ +++  + +   IE++  ++ +  I+     T     +K ALL  L+
Sbjct: 181 NLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWL--TTVDKDRKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++     +IF   K     L   LEK+G    A H    Q  R ++L +FK G +  +
Sbjct: 239 K-ENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ + +RG+DI  +  V N+D+P+ A++YIHRIGRTGRAG  G+A + V+K+D +++ A
Sbjct: 298 VATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCA 357

Query: 360 IEK----LIEKK 367
           IE+    +IE+K
Sbjct: 358 IERRLGHIIERK 369


>gi|260577582|ref|ZP_05845521.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
           43734]
 gi|258604306|gb|EEW17544.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
           43734]
          Length = 707

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 141/370 (38%), Positives = 230/370 (62%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   V+ AV   G+  P+PIQ +TIP++++ HDV G+AQTGTGKTA+F LP+L+ 
Sbjct: 76  FDGLGLPENVLAAVKKVGFEVPSPIQAETIPVLMEGHDVVGLAQTGTGKTAAFALPILSR 135

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ L+L PTRELA QVA++F+ + ++   + V  + GG  +  Q   L R
Sbjct: 136 IDVSK---RHPQALVLAPTRELALQVAESFQSFSEHLGGIHVLPIYGGQAYGVQLSGLRR 192

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  +G L ++ +  +V+DEAD ML+MGF   ++ I    P  +Q  
Sbjct: 193 GAHIVVGTPGRVIDHLEKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPSDKQVA 252

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++S+ +L +P+ I V     T+E IE  ++     +  K   L ++L+ 
Sbjct: 253 LFSATMPSGIRRLSKQYLSDPREITVKATQRTSENIEQDYL--LVSHRDKLDALTRILEI 310

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  I+F   K     L   L  +GF+  AI+G+I Q  R + +   K+G + ++VA
Sbjct: 311 TE-FEAMIMFVRTKNETEELAERLRARGFNAAAINGDIPQNLRERTVDQLKDGRLDILVA 369

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HVFN+D+P+  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 370 TDVAARGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAGRKGRAILFVTPRERRLLKSIE 429

Query: 362 KLIEKKVDWL 371
           +  + +++ +
Sbjct: 430 RATKSRLNEI 439


>gi|8928554|sp|P33906|DEAD_KLEPN RecName: Full=Cold-shock DEAD box protein A; AltName:
           Full=ATP-dependent RNA helicase deaD
          Length = 643

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 144/379 (37%), Positives = 234/379 (61%), Gaps = 10/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     +R P+ L+L PTRELA QVA+   ++ K+   + V  L GG  ++ Q + L +
Sbjct: 68  IDP---ELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   Y    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQALERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDLSS 377
              KL   +V+  N +L S
Sbjct: 362 RTMKLTIPEVELPNAELLS 380


>gi|256852006|ref|ZP_05557393.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           27-2-CHN]
 gi|260661425|ref|ZP_05862338.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           115-3-CHN]
 gi|282931887|ref|ZP_06337366.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
 gi|297205122|ref|ZP_06922518.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           jensenii JV-V16]
 gi|256615418|gb|EEU20608.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           27-2-CHN]
 gi|260547880|gb|EEX23857.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           115-3-CHN]
 gi|281303998|gb|EFA96121.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
 gi|297149700|gb|EFH29997.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           jensenii JV-V16]
          Length = 484

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 151/381 (39%), Positives = 231/381 (60%), Gaps = 13/381 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+  ++ A+  +G+ + TPIQ KTIPL L   DV G AQTGTGKTA+F LP  
Sbjct: 1   MKFTELGLNDALLKAIKRSGFEEATPIQEKTIPLALAGKDVIGQAQTGTGKTAAFGLP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL+K   +    + L++EPTRELA Q  +   + G++    V ++ GG     Q + L+
Sbjct: 59  -ILQKINNKEHFIQALVIEPTRELAIQTQEELYRLGRDEKAKVQVVYGGADISRQIRALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGRILDH  R  + ++ I+ +V+DEAD MLDMGFI  I++I         T
Sbjct: 118 QTPAILVGTPGRILDHLKRKTVKLDKIKTVVLDEADEMLDMGFIQDIESILDFAQNREHT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + ++ E F++ P+ +++ +   TA+ I+  FV   A+ ++K  ++ +L+ 
Sbjct: 178 LLFSATMPKPILRIGEKFMKEPEIVQIKSKELTADLIDQYFV--RAKEAEKFDIMCRLID 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+ V  L   L  +G++   IHG++ Q  RM +L  FK G + ++V
Sbjct: 236 VQ-APDLAVVFGRTKRRVDELTRGLVARGYNAAGIHGDLSQAKRMSVLKRFKNGKLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKNGISVTFVTPNEIGYMRTI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPP 381
           E L +KK       +S L PP
Sbjct: 355 ENLTKKK-------MSPLRPP 368


>gi|256376393|ref|YP_003100053.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
 gi|255920696|gb|ACU36207.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
          Length = 561

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/367 (40%), Positives = 218/367 (59%), Gaps = 2/367 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL P+++ A+   GY +PTPIQ + I  + +  D+ G A TGTGKTA+F LP+L  
Sbjct: 12  FADLGLRPELLRALSGLGYEEPTPIQREAIVPLTEGRDLLGQAATGTGKTAAFALPVLER 71

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +   R   P  L+L PTRELA QV++   +YG+     V  + GG P   Q + LERG
Sbjct: 72  LAQVEKRGDAPFALVLVPTRELAVQVSEAVHRYGRELGARVLPIYGGQPIGRQLRVLERG 131

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR +DH  RG L + +++++V+DEAD MLDMGF   +  I +  P  RQT+L
Sbjct: 132 VDVVVATPGRAVDHLGRGTLNLEDLQVVVLDEADEMLDMGFAEDLDTILAETPKQRQTVL 191

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTP-SSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSATM   + K++   L  P RI +N   +   E      VA     + K A L ++L  
Sbjct: 192 FSATMPPRIDKLARQHLTEPARITINQERAEPGEAPRVRQVAYVVPRAHKPAALGRVLDV 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      I+FC  +  V  L  +L  +G+   ++HG I Q  R ++++  + GT  L+VA
Sbjct: 252 E-APTAAIVFCRTRDEVDQLTETLNGRGYRAESLHGGISQEQRDRVMARLRNGTADLLVA 310

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N++VP+  E+Y+HRIGR GRAGR G A TL    +   +  IE
Sbjct: 311 TDVAARGLDVEQLTHVVNYNVPSAPESYVHRIGRVGRAGREGVAITLAEPREHGMLKTIE 370

Query: 362 KLIEKKV 368
           ++ ++++
Sbjct: 371 RVTKQRI 377


>gi|156935688|ref|YP_001439604.1| ATP-dependent RNA helicase DeaD [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156533942|gb|ABU78768.1| hypothetical protein ESA_03554 [Cronobacter sakazakii ATCC BAA-894]
          Length = 635

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 143/377 (37%), Positives = 236/377 (62%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FTDLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLHN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           +++    +R P+ L+L PTRELA QVA+    + K+ + + V  L GG  ++ Q + L +
Sbjct: 68  IDE---TLRAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++N++ LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   + + Y    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|289668227|ref|ZP_06489302.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 640

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/373 (39%), Positives = 227/373 (60%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV + GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 11  FADLGLSGAVMKAVANVGYESPSPIQAATIPALLSGRDVLGQAQTGTGKTAAFALPVLSN 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
            +  + +   P+ L+L PTRELA QVA+ F+KY +      V  + GG P+  Q   L+R
Sbjct: 71  ADLNQLK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   + ++++ +L++P  + +   ++T+  I   +   +     K   L ++L+ 
Sbjct: 188 LFSATMPPAICRIAQTYLKDPAEVTIAAKTTTSANIRQRY--WWVSGLHKLDALTRILEV 245

Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   IIF   K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++
Sbjct: 246 EPFDGM---IIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDIL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  V HV N+D+P   E+Y+HRIGRTGRAGR+G A   V   +   + +
Sbjct: 303 VATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRS 362

Query: 360 IEKLIEKKVDWLN 372
           IE+   + ++ + 
Sbjct: 363 IERATRQPIEEMQ 375


>gi|229526712|ref|ZP_04416116.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
 gi|229336870|gb|EEO01888.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
          Length = 422

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 150/379 (39%), Positives = 232/379 (61%), Gaps = 9/379 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGL  +++ A+ + G V PTPIQ + IP VLQ  DV   AQTGTGKTA+F LP++
Sbjct: 6   ITFSQLGLDSRLLNALSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65

Query: 61  T-ILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
              +E+   R    +  R L+L PTRELA QV D+ + Y K   L +  + GG   + Q 
Sbjct: 66  QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G D+LI TPGR+LDH +   L +  +E+LV+DEADRMLDMGF+P +Q +   +  
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSAT   +++ V+   +++P  ++V   +STAET++           +K  LL 
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPV--DKKRKRELLS 243

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L+ S++  +  ++F   ++    L   L+  G    +I+G+  Q +R K L +FK G +
Sbjct: 244 YLIGSKN-WQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L++ ++   
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSYDEQPQ 362

Query: 357 IDAIEKLIEKKV--DWLNG 373
           ++AIE+L+  ++  +WL G
Sbjct: 363 LEAIERLLNTRLPQEWLKG 381


>gi|154252927|ref|YP_001413751.1| DEAD/DEAH box helicase domain-containing protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154156877|gb|ABS64094.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 448

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 152/378 (40%), Positives = 230/378 (60%), Gaps = 13/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG++  +  A+    Y  PTPIQ + IP +L+  D+ G+AQTGTGKTA+F LP+L I
Sbjct: 6   FADLGVAEPLCRALAANNYTNPTPIQAQAIPALLEGRDLLGLAQTGTGKTAAFALPILQI 65

Query: 63  LEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L     + R P   R LIL PTRELA Q++ + E YGKN+ L   ++ GG+    Q K +
Sbjct: 66  LAAANEK-RQPKEARALILAPTRELAVQISQSIESYGKNFKLRHTVIFGGVNQFRQVKAM 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR+LD  N+  + ++   +LV+DEADRMLDMGFI  ++ I + +P  RQ
Sbjct: 125 TAGVDIVVATPGRLLDLMNQKHVNLSRTSLLVLDEADRMLDMGFIRDVRKIIAAMPRQRQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSATM   +Q +++  L+ P R+EV     T + I+   +  +    +K  LL +LL
Sbjct: 185 SLLFSATMPSSIQHLADEILREPVRVEVTPEVVTVDKIDQRVL--HVDGKRKRELLAKLL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + + +   I+F   K     +   L+K G    AIHGN  Q +R + L  F+ G  +++
Sbjct: 243 DNSE-LSRVIVFTRTKHCANRVSEQLDKSGVLSEAIHGNKSQGARQRALDMFRNGKARVL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ D+ HV N+++PN  E+Y+HRIGRT RAG+ G A +     +  H+ +
Sbjct: 302 VATDIAARGIDVSDITHVINYELPNEPESYVHRIGRTARAGKSGIALSFCDASERSHLRS 361

Query: 360 IEKLIEKKV------DWL 371
           IEKL ++ +      +WL
Sbjct: 362 IEKLTKRPLTVMDTTEWL 379


>gi|329116940|ref|ZP_08245657.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parauberis
           NCFD 2020]
 gi|326907345|gb|EGE54259.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parauberis
           NCFD 2020]
          Length = 537

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 146/371 (39%), Positives = 229/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               K R    + + L++ PTRELA Q  +   ++G++  + V  + GG   + Q K L+
Sbjct: 61  N---KVRTDENIIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIDKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L ++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPANRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F++ P+ +++     T   +E  +V    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPAPIKQIGVKFMKEPEHVQIKNKELTNVNVEQFYVRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   + ++V
Sbjct: 236 V-DQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI DV HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISDVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKQMTPL 365


>gi|229515773|ref|ZP_04405232.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
 gi|229347542|gb|EEO12502.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
          Length = 397

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 154/373 (41%), Positives = 224/373 (60%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V  V   GY KPT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  ++YGK+  L    + GG+  +AQ ++L
Sbjct: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVDQYGKDTGLKSLAVFGGVDEQAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  +++P  I +    ++   I    +        K ALL  L+
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV--DKDTKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 239 NEQQ-WDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357

Query: 360 IEK----LIEKKV 368
           IE     LIE++V
Sbjct: 358 IESRLGHLIERRV 370


>gi|256424779|ref|YP_003125432.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256039687|gb|ACU63231.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 492

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 163/433 (37%), Positives = 249/433 (57%), Gaps = 20/433 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGL   ++ A+ + GY  PTPIQ + IP VL   D+ G AQTGTGKTA+F +P+L
Sbjct: 27  LSFEQLGLIEPLLKALDNEGYTAPTPIQQQAIPHVLDTRDLLGCAQTGTGKTAAFAIPLL 86

Query: 61  TILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            ++ +      R  +R  + LIL PTRELA Q+ ++F  YGK  +L   ++ GG+    Q
Sbjct: 87  QLMHQDQQAQQRKGLRNIKALILTPTRELAIQIQESFTAYGKFLDLKSLVIFGGVSQHPQ 146

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L++G D+LI TPGR+LD  ++  + + +I+  V+DEADRMLDMGF+  +Q +   +P
Sbjct: 147 TEALKKGVDILIATPGRLLDLISQNYITLRDIKYFVLDEADRMLDMGFVHDVQRVIVKLP 206

Query: 176 FTRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
             RQ+L FSATM  E+Q +++  L+ NP ++EV   SSTAETI       +   + K  L
Sbjct: 207 EQRQSLFFSATMPPEIQTLAKAILRNNPAKVEVTPVSSTAETITQSMY--FVNKNDKRNL 264

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  +L+ +  +K  ++F   K     +   L K   +  AIHGN  Q +R + L+NFK  
Sbjct: 265 LLHILKDK-AIKTLLVFTRTKHGADRVVKDLHKAEITAEAIHGNKSQNARQRALNNFKSQ 323

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             +++VA+D+AARG+DI ++ HV N+++PN  E Y+HRIGRTGRAG  G A +    E+ 
Sbjct: 324 QTRVLVATDIAARGIDIDELTHVVNYELPNVPETYVHRIGRTGRAGADGIAISFCEPEEK 383

Query: 355 KHIDAIEKLIEKKV------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
             +  I KLI +++       + NGD  +L  P      A     ++ +P  +K  GF R
Sbjct: 384 AFLKDILKLISREIPVETEHPFHNGDSMALPAP----KPAPQQKPKQQHPRDKKG-GFSR 438

Query: 409 RKKNYSSQKSHIP 421
            ++     +   P
Sbjct: 439 NRQGVVQSRDARP 451


>gi|238854499|ref|ZP_04644837.1| cold-shock DEAD box protein A [Lactobacillus jensenii 269-3]
 gi|260664817|ref|ZP_05865668.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           SJ-7A-US]
 gi|282934107|ref|ZP_06339386.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
 gi|313472627|ref|ZP_07813116.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           jensenii 1153]
 gi|238832852|gb|EEQ25151.1| cold-shock DEAD box protein A [Lactobacillus jensenii 269-3]
 gi|239529420|gb|EEQ68421.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           jensenii 1153]
 gi|260561300|gb|EEX27273.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           SJ-7A-US]
 gi|281301854|gb|EFA94119.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
          Length = 484

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 151/383 (39%), Positives = 232/383 (60%), Gaps = 13/383 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+  ++ A+  +G+ + TPIQ KTIPL L   DV G AQTGTGKTA+F LP  
Sbjct: 1   MKFTELGLNDALLKAIKRSGFEEATPIQEKTIPLALAGKDVIGQAQTGTGKTAAFGLP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL+K   +    + L++EPTRELA Q  +   + G++    V ++ GG     Q + L+
Sbjct: 59  -ILQKIDNKEHFIQALVIEPTRELAIQTQEELYRLGRDEKAKVQVVYGGADISRQIRALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGRILDH  R  + ++ I+ +V+DEAD MLDMGFI  I++I         T
Sbjct: 118 QTPAILVGTPGRILDHLKRKTVKLDKIKTVVLDEADEMLDMGFIQDIESILDFAKNREHT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + ++ E F++ P+ +++ +   TA+ I+  FV   A+ ++K  ++ +L+ 
Sbjct: 178 LLFSATMPKPILRIGEKFMKEPEIVQIKSKELTADLIDQYFV--RAKEAEKFDIMCRLID 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+ V  L   L  +G++   IHG++ Q  RM +L  FK G + ++V
Sbjct: 236 VQ-APDLAVVFGRTKRRVDELTRGLVARGYNAAGIHGDLSQAKRMSVLKRFKNGKLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKNGISVTFVTPNEIGYMRTI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           E L +KK       +S L PP +
Sbjct: 355 ENLTKKK-------MSPLRPPTD 370


>gi|332670437|ref|YP_004453445.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi
           ATCC 484]
 gi|332339475|gb|AEE46058.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484]
          Length = 596

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/361 (40%), Positives = 209/361 (57%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   +  AV D G+V P+ IQ + +P +L   D+ G+AQTGTGKTA+F LP+L  
Sbjct: 27  FATLGLPAPLERAVADLGFVTPSAIQSQAVPALLAGRDIVGVAQTGTGKTAAFGLPLLAA 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++ G A V+    ++L PTRELA QVAD    +  +   L V  + GG PF  Q + + R
Sbjct: 87  VDAGTAGVQ---AIVLTPTRELAMQVADAITSFATHLPGLAVVAVYGGSPFLPQQRAIAR 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR+LDH +RG L+++ +  LV+DEAD ML MGF   +  + +  P  RQ  
Sbjct: 144 GAQVVVGTPGRVLDHLDRGTLVLDQVRYLVLDEADEMLRMGFAEDVDRVLASTPDRRQVA 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +++V+E  L  P  I V   SST  T+   +      Y  K   L ++L  
Sbjct: 204 LFSATMPAPIRRVAEQHLHQPVEITVARQSSTVTTVRQTY--AVVPYRHKIGALGRVLAV 261

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D     I+F   +     +  +L ++G S   I G++ Q  R KI+   + G + ++VA
Sbjct: 262 TDADAT-IVFVRTRGAAEEVGSALVERGISAAHISGDVAQSDREKIVDRLRSGALDVLVA 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V NFDVP  AE Y+HRIGRTGRAGR G A + V   +   +  IE
Sbjct: 321 TDVAARGLDVERIGLVVNFDVPREAETYVHRIGRTGRAGREGVALSFVTPAEQSRLRTIE 380

Query: 362 K 362
           +
Sbjct: 381 R 381


>gi|294789302|ref|ZP_06754540.1| ATP-dependent RNA helicase RhlE [Simonsiella muelleri ATCC 29453]
 gi|294482727|gb|EFG30416.1| ATP-dependent RNA helicase RhlE [Simonsiella muelleri ATCC 29453]
          Length = 455

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/370 (39%), Positives = 220/370 (59%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ A+  AGY  PTPIQ++ IP  L   D+   AQTG+GKTA+F+LP L
Sbjct: 3   IQFADLNLDKNILSALQSAGYHSPTPIQMQAIPAALADKDIMASAQTGSGKTAAFLLPSL 62

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKK 118
             I+++     + PR L+L PTRELAAQV  N + Y  N        L+GG  F  Q K 
Sbjct: 63  QKIIKRSEKPGKGPRVLVLTPTRELAAQVEKNAQIYANNMKWVRTVTLVGGSSFGQQIKM 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R  DV++ TPGR++DH   G++    +E+L++DEADRMLDMGFI  I+ I +  P  R
Sbjct: 123 LSRPIDVIVATPGRLMDHMRSGRIDFERLEVLILDEADRMLDMGFIDDIETIVAATPEDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    +NP+ IE+       +  E         +  +  LL  +
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKNPEIIEIEREDKQGKIEEQLLYCDDKNHKNR--LLDHI 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+  + +   +IF + K     L   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 241 LRDAN-IDQCVIFTSTKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A +     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGMAISFAEVNEYIAVH 359

Query: 359 AIEKLIEKKV 368
            IE+ IE+K+
Sbjct: 360 KIERYIERKL 369


>gi|331268314|ref|YP_004394806.1| ATP-dependent RNA helicase [Clostridium botulinum BKT015925]
 gi|329124864|gb|AEB74809.1| ATP-dependent RNA helicase [Clostridium botulinum BKT015925]
          Length = 528

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 150/367 (40%), Positives = 229/367 (62%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +S ++  A+ D G+  P+PIQ K IP +L   D+ G AQTGTGKTA+F +P L  
Sbjct: 6   FEDLPISDEIKRAIADMGFEAPSPIQEKAIPFILSGKDIIGQAQTGTGKTAAFGIPALDT 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++     +++   ++L PTRELA Q      K GK   +++V  + GG P + Q K L+R
Sbjct: 66  IDLNNKSLQI---MVLCPTRELAIQATQEVHKLGKYKKDISVLAVYGGQPIDRQIKALKR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR++DH  R  L  +NI+++V+DEAD MLDMGF   I+ I   +P  RQT+
Sbjct: 123 GVQIIIGTPGRVIDHIRRKTLKTDNIKMIVLDEADEMLDMGFRDDIETIIQEIPQNRQTI 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   + ++S+ +  N + I+V     T   IE  ++    + + K  +L +L+  
Sbjct: 183 LFSATMAKAIIELSKKYQNNAEFIKVVHKQLTVPNIEQRYLEV--KENNKLEVLSRLIDM 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++  K  +IFCN KK V  +   L+ +G+    +HG++ Q  R ++++ F+ GTI+++VA
Sbjct: 241 RNP-KLSVIFCNTKKRVDEVVSQLQARGYFAEGLHGDMKQPQRDRVMNKFRNGTIEILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G AFT VA + I+ +  IE
Sbjct: 300 TDVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRSGIAFTFVAGKAIRKLRDIE 359

Query: 362 KLIEKKV 368
           +  + KV
Sbjct: 360 RYTKTKV 366


>gi|194467658|ref|ZP_03073645.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
           100-23]
 gi|194454694|gb|EDX43591.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
           100-23]
          Length = 497

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 144/363 (39%), Positives = 229/363 (63%), Gaps = 6/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+  +GY + TPIQ +TIP+VL+  DV G AQTGTGKTA+F LP++
Sbjct: 1   MKFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    +I+ PTRELA Q  +   + GK+ ++ V ++ GG     Q K L+
Sbjct: 61  ENVDTENPNIQ---AIIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGR+ DH NR  + +++I+ LV+DEAD ML+MGF+  I++I    P  RQT
Sbjct: 118 QHPQILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++++   F+ +P+ + +     T + ++  +V   A+  +K  ++ +L+ 
Sbjct: 178 LLFSATMPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYVR--ARDYEKFDIMTRLID 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     I+F   K+ V  L   L  +G++   IHG++ Q  R KI+  FK   + ++V
Sbjct: 236 VQDPDLT-IVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P+  ++Y+HRIGRTGRAG HG + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEI 354

Query: 361 EKL 363
           EKL
Sbjct: 355 EKL 357


>gi|328552138|gb|AEB22630.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens TA208]
          Length = 494

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 151/369 (40%), Positives = 226/369 (61%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS  ++ ++   G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F +P++  
Sbjct: 5   FQDFQLSSDLMKSINRMGFEEATPIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIPLV-- 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            EK        + +++ PTRELA QV++   K G++    V  + GG     Q + L++ 
Sbjct: 63  -EKMNPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKN 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH NR  + +NN+  +V+DEAD ML+MGFI  I++I S VP   QTLL
Sbjct: 122 PHIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +++++E F+  P+ ++V     T   I+  ++    Q  KK   L +LL  Q
Sbjct: 182 FSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLE--VQERKKFDTLTRLLDIQ 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM  L  FKEG I+++VA+
Sbjct: 240 -SPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVAT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFDVP   E+Y+HRIGRTGRAG+ G A T +   +   + AIE+
Sbjct: 299 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQ 358

Query: 363 LIEKKVDWL 371
             ++K+D +
Sbjct: 359 TTKRKMDRM 367


>gi|262201927|ref|YP_003273135.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
 gi|262085274|gb|ACY21242.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
           43247]
          Length = 597

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 146/365 (40%), Positives = 223/365 (61%), Gaps = 6/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL +  +V  AV D GY  P+PIQ  TIP ++   DV G+AQTGTGKTA+F +P+L
Sbjct: 17  LTFDDLDIDSRVRAAVSDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIPIL 76

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNK 117
           + LE     +  R P+ L+L PTRELA QVA+ F +Y  +   + V  + GG  +  Q  
Sbjct: 77  SRLEGAGDGSGPRKPQALVLAPTRELALQVAEAFGRYSAHMPEVRVLPIYGGQSYGVQLA 136

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RGA V++ TPGR++DH +RG L ++ +  LV+DEAD ML MGF   ++ I +  P  
Sbjct: 137 GLRRGAQVIVGTPGRVIDHLDRGTLDISELRFLVLDEADEMLTMGFAEDVERILAETPDD 196

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +Q  LFSATM   ++++++ +L +P+ I V + ++TA+ I   ++    Q  +K   L +
Sbjct: 197 KQVALFSATMPSAIRRLAQRYLNDPQEITVKSKTATAQNITQRYLQVSHQ--RKLDALTR 254

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L+ + T    I+F   K+    L   L  +GFS  AI+G++ Q  R + ++  K G I 
Sbjct: 255 FLEVE-TFDAMIVFVRTKQATEELAEKLRSRGFSAVAINGDMAQAQRERTINQLKSGGID 313

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  +   +
Sbjct: 314 ILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGNALLFVSPRERHLL 373

Query: 358 DAIEK 362
            +IE+
Sbjct: 374 RSIER 378


>gi|254468401|ref|ZP_05081807.1| dead/deah box helicase domain protein [beta proteobacterium KB13]
 gi|207087211|gb|EDZ64494.1| dead/deah box helicase domain protein [beta proteobacterium KB13]
          Length = 444

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 148/381 (38%), Positives = 227/381 (59%), Gaps = 6/381 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++ G  P +  A+    Y  PTPIQ + IP+VL   DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFSNFGFIPPIGKAISRINYSTPTPIQEQCIPVVLSGKDVLASAQTGTGKTAAFCLPLL 60

Query: 61  TILEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            ++EK       R   P  LIL PTRELA Q+    +++    +  +  ++GG+ ++ QN
Sbjct: 61  NLVEKKPKHKHKRNISPDVLILSPTRELATQIEQELKRFSHFMDTNIVSVVGGVSYKLQN 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+   + L+ TPGR++D   + K+ + +I+ LVIDEADRMLDMGFIP I+ I      
Sbjct: 121 KLLKSNVNFLVATPGRLMDLVKQRKINLKHIDALVIDEADRMLDMGFIPDIKKIFESTSQ 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +Q L+F+AT+  +++K+++ FL++P+RI V   + + + I+       A Y++K  +L 
Sbjct: 181 DQQVLMFTATLNKQIEKIAQQFLKDPQRIAVEQENKSNKNIQQI-AYPVADYNQKKLVLV 239

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +L   D +   IIF   K+    L   L         +HG++ QR R + ++ FK   I
Sbjct: 240 DVLNEAD-LNQAIIFTATKREADRLSDELYLMNHRSKTLHGDMSQRERTRTINRFKNNEI 298

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+D+ D+ HV NFD+P + E+YIHRIGRTGRA R GKA +LV  ++   
Sbjct: 299 QILVATDVAARGIDVDDITHVINFDLPRQVEDYIHRIGRTGRAERKGKAISLVIDKEKFM 358

Query: 357 IDAIEKLIEKKVDWLNGDLSS 377
           +  IEK    K++ +    S+
Sbjct: 359 LQKIEKYANIKIEVIKSTHST 379


>gi|300781459|ref|ZP_07091313.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
           33030]
 gi|300533166|gb|EFK54227.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
           33030]
          Length = 675

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 148/391 (37%), Positives = 242/391 (61%), Gaps = 15/391 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   V+ A+   G+  P+ IQ +TIPL+++  DV G+AQTGTGKTA+F LP+L  
Sbjct: 72  FNGLGLPAPVLDAIKRVGFESPSQIQAETIPLLMEGRDVVGLAQTGTGKTAAFALPILAR 131

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++      R P+ LIL PTRELA QV+D+F+ +  +   ++V  + GG  +  Q   L R
Sbjct: 132 IDTS---ARYPQALILAPTRELALQVSDSFQSFADHLGGISVLPIYGGQAYGIQLSGLRR 188

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  +G L ++N+  LV+DEAD ML+MGF   ++ I    P  +Q  
Sbjct: 189 GAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVA 248

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++S ++L +P+ + V   + T   I   ++ T A  +K  A+ + L  +
Sbjct: 249 LFSATMPNAIRRISHDYLNDPEEVTVKAKTRTNTNITQRYLFT-AHRNKLDAITRVLEVT 307

Query: 242 Q-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D M   I+F   K+    +   L  +GFS  AI+G+I Q+ R + +   ++G + ++V
Sbjct: 308 EFDAM---IVFVRTKQETEEIAEKLRARGFSAAAINGDIAQQQRERTVDMLRDGRLDILV 364

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +I
Sbjct: 365 ATDVAARGLDVERISHVLNYDIPNDTESYVHRIGRTGRAGRTGEALLFVTPRERRMLRSI 424

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
           EK+   K++ +  DL    P ++++++++ N
Sbjct: 425 EKVTGAKIEEM--DL----PTVDEVNVSRMN 449


>gi|238021260|ref|ZP_04601686.1| hypothetical protein GCWU000324_01158 [Kingella oralis ATCC 51147]
 gi|237868240|gb|EEP69246.1| hypothetical protein GCWU000324_01158 [Kingella oralis ATCC 51147]
          Length = 449

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 145/368 (39%), Positives = 223/368 (60%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FADL L   ++ A+  AGY +PTPIQ ++IP  L   D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSALKSAGYEEPTPIQAQSIPAALANQDIMASAQTGSGKTAAFLLPSLQK 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLE 120
           I+++     + PR L+L PTRELA QV  N + Y +N        L+GG  F  Q K L 
Sbjct: 65  IIKRSEQPGKGPRVLVLTPTRELAQQVEKNAQLYAQNMKWVRTVTLVGGSSFGQQIKALS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R  D+++ TPGR++DH   G++  + +E+LV+DEADRMLDMGFI  I+ I + +P +RQT
Sbjct: 125 RPIDIVVATPGRLMDHMRSGRIDFDRLEVLVLDEADRMLDMGFIDDIETIVAAMPESRQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    + K++    +NP+ IE+    +  +  E         +  +  LL  +L+
Sbjct: 185 LLFSATWDGAVGKLARKLTKNPEVIEIERAEAQGKIEEQLLYCDDRNHKNR--LLDHILR 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +   +IF   K     L   L ++GF+   +HG++ Q  R + L + ++G  +++V
Sbjct: 243 DAN-IDQCVIFTATKAMTETLADELYEKGFAANCLHGDMPQGWRNRTLMDVRKGRCKILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A +    ++   +  I
Sbjct: 302 ATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAVSFADAKEYMMVHKI 361

Query: 361 EKLIEKKV 368
           E+ I +K+
Sbjct: 362 ERYINRKL 369


>gi|254286146|ref|ZP_04961106.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
 gi|150423815|gb|EDN15756.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
          Length = 397

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 154/373 (41%), Positives = 225/373 (60%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V  V   GY KPT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YGK+  L    + GG+  +AQ ++L
Sbjct: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  +++P  I +    ++   I    +        K ALL  L+
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV--DKDTKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 239 -NEHQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357

Query: 360 IEK----LIEKKV 368
           IE     LIE++V
Sbjct: 358 IESRLGHLIERRV 370


>gi|150390823|ref|YP_001320872.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149950685|gb|ABR49213.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 529

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 154/399 (38%), Positives = 240/399 (60%), Gaps = 17/399 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL +   ++ A+ + G+  PTPIQ++ IP +    D+ G AQTGTGKTA+F +PM+
Sbjct: 4   MHFEDLDIKKDILKALKELGFEVPTPIQVQAIPHLKMGKDIIGQAQTGTGKTAAFGIPMI 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
              E+   + +  + LI+ PTREL+ QVAD  +K+  N+ + V  L   GG P   Q K 
Sbjct: 64  ---ERVNPKNKAVQILIMAPTRELSVQVADEIQKFS-NHVIGVKTLAIYGGQPISTQIKA 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RG  +++ TPGRILDH NR  L +  +  +V+DEAD+MLDMGF   ++ I    P  R
Sbjct: 120 LKRGVQIIVGTPGRILDHINRKTLKLGEVIGVVLDEADQMLDMGFQEDMEAILKETPTER 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQ 236
           QT +FSAT++ E++++++ +++ P++I V   + T   I   +  V  + +    C +L 
Sbjct: 180 QTAMFSATISREIERIAQKYMKQPEKIMVAQKALTVPQISQYYFEVKPHEKVEALCRIL- 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                 D    GIIFC  K++V  L   L+ +G+S  AIHG++ Q  R +++  F+  TI
Sbjct: 239 ----DMDKTDLGIIFCRTKRSVDELTEKLQNRGYSAAAIHGDLKQTQRDRVMKKFRNRTI 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+VA+D+AARG+D+ DV  V N+D+P   E Y+HRIGRTGRAG+ G A+TL   + ++ 
Sbjct: 295 DLLVATDVAARGIDVNDVEMVMNYDIPEDFEYYVHRIGRTGRAGKEGVAYTLATGKQMRT 354

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKI--DIAQHNHA 393
           + A+E  I+ K+  +   + ++N  +EK    IA   HA
Sbjct: 355 LKALESYIKGKI--VRRKIPTVNDVVEKQKDSIADQIHA 391


>gi|194290281|ref|YP_002006188.1| dead/deah box helicase/ATP-dependent RNA helicase [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224116|emb|CAQ70125.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP-DEPENDENT
           RNA HELICASE (C-terminal)(rhlE-like) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 624

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 151/383 (39%), Positives = 229/383 (59%), Gaps = 21/383 (5%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LGL   ++ A+ D  Y  PTP+Q + IP  L   D+   +QTG+GKTA+F+LP +  + +
Sbjct: 54  LGLDAAILRALSDLNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQRISE 113

Query: 66  -----------GRARVRMPRT-------LILEPTRELAAQVADNFEKYGKNYNLTV-ALL 106
                       R + + PR        L+L PTRELA QV +   KYG+N    V A +
Sbjct: 114 MPAPQRATEPAKRMKGKRPRPAPAQPALLVLTPTRELALQVTEAAAKYGRNLRRIVCASI 173

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
           +GG+P+  Q   L +  D+L+ TPGR+LDH + G++ ++ +++LV DEADRMLDMGF   
Sbjct: 174 LGGMPYPKQLAMLAKMPDILVATPGRLLDHIDAGRIDLSALQMLVFDEADRMLDMGFADD 233

Query: 167 IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
           I  I +  P +RQTL+FSAT+   + +++   L++P+RIE+    +    IE     T  
Sbjct: 234 IDAIVNATPASRQTLMFSATLDARIAQLASRQLKDPQRIEIAAARADQSHIEQRLHFTD- 292

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
             S K  LL  LL+   ++K  I+F   K++  +L   L   GFS  A+HG++ Q +R +
Sbjct: 293 DMSHKERLLDHLLRDA-SLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNR 351

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L+  + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR G A 
Sbjct: 352 TLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAI 411

Query: 347 TLVAKEDIKHIDAIEKLIEKKVD 369
            LV   D+     IE+   ++VD
Sbjct: 412 NLVNHNDMFQWRRIERFTNQRVD 434


>gi|4409804|gb|AAD20136.1| autoaggregation-mediating protein [Lactobacillus reuteri ATCC
           53608]
          Length = 497

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 144/363 (39%), Positives = 229/363 (63%), Gaps = 6/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+  +GY + TPIQ +TIP+VL+  DV G AQTGTGKTA+F LP++
Sbjct: 1   MKFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    +I+ PTRELA Q  +   + GK+ ++ V ++ GG     Q K L+
Sbjct: 61  ENVDTENPNIQ---AIIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGR+ DH NR  + +++I+ LV+DEAD ML+MGF+  I++I    P  RQT
Sbjct: 118 QHPQILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++++   F+ +P+ + +     T + ++  +V   A+  +K  ++ +L+ 
Sbjct: 178 LLFSATMPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYVR--ARDYEKFDIMTRLID 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     I+F   K+ V  L   L  +G++   IHG++ Q  R KI+  FK   + ++V
Sbjct: 236 VQDPDLT-IVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P+  ++Y+HRIGRTGRAG HG + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEI 354

Query: 361 EKL 363
           EKL
Sbjct: 355 EKL 357


>gi|16331758|ref|NP_442486.1| ATP-dependent RNA helicase DeaD [Synechocystis sp. PCC 6803]
 gi|1001719|dbj|BAA10556.1| ATP-dependent RNA helicase; DeaD [Synechocystis sp. PCC 6803]
          Length = 492

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 154/368 (41%), Positives = 226/368 (61%), Gaps = 8/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS K    + D G+  PT IQ + IPL+L   D+   +QTGTGKTA+F LP++  
Sbjct: 9   FADLGLSEKRCQLLADIGFEAPTQIQTEAIPLLLSGRDMLAQSQTGTGKTAAFALPLMDR 68

Query: 63  LE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++ +G  +      LIL PTRELA QVA+  + +     L +  + GG   E Q + LER
Sbjct: 69  IDPEGDLQA-----LILTPTRELAQQVAEAMKDFSHERRLFILNVYGGQSIERQIRSLER 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++D  +R KL +  I+ +V+DEAD ML MGFI  ++ I    P TRQT 
Sbjct: 124 GVQIVVGTPGRVIDLIDRKKLKLETIQWVVLDEADEMLSMGFIDDVKTILRKTPPTRQTA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E++++   FL +P  + V    ST   IE         +SK  AL Q +L+ 
Sbjct: 184 CFSATMPREIKELVNQFLNDPALVTVKQTQSTPTRIEQQLYHVPRGWSKAKAL-QPILEM 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D  ++ IIF   K+   +L   L++ G SV   HGN+ Q  R +++  F++G I+L+VA
Sbjct: 243 EDP-ESAIIFVRTKQTAADLTSRLQEAGHSVDEYHGNLSQSQRERLVHRFRDGKIKLVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++ HV NFD+P+ AE YIHRIGRTGRAG+ GKA  LV   D + + +IE
Sbjct: 302 TDIAARGLDVNNLSHVVNFDLPDNAETYIHRIGRTGRAGKTGKAIALVEPIDRRLLRSIE 361

Query: 362 KLIEKKVD 369
             ++++++
Sbjct: 362 NRLKQQIE 369


>gi|89097884|ref|ZP_01170771.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
 gi|89087386|gb|EAR66500.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
          Length = 485

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 151/370 (40%), Positives = 226/370 (61%), Gaps = 13/370 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS ++  AV + G+ +PTPIQ + IP+ L   D+ G AQTGTGKT +F +P+L  
Sbjct: 4   FSDFNLSKELEKAVSNMGFEEPTPIQAQAIPIGLSGKDMIGQAQTGTGKTTAFGIPLLEK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL--E 120
           ++         + L+L PTRELA QVA+   + G+   +    + GG     Q + L  +
Sbjct: 64  IDINEG----IQGLVLAPTRELAVQVAEELNRIGQVKGVRTLPIYGGQDISRQIRALKKD 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  ++  TPGR++DH  R  + +N I++ V+DEAD ML+MGFI  I+ I S VP  RQT
Sbjct: 120 RGPHIIAATPGRLIDHIERKTIRLNKIKLAVLDEADEMLNMGFIEDIERILSEVPEQRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ--YSKKCALLQQL 238
           LLFSATM   +Q ++E F+  P+ +++     T + IE  ++  + +  +   C+LL   
Sbjct: 180 LLFSATMPRRIQSLAERFMTEPEMVQIKAKELTVKNIEQHYMEVHEKQKFDVLCSLLD-- 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +QS +     I+F   KK V  +   L K+G+S   IHG++ Q  R +++  FKE TI +
Sbjct: 238 IQSPEL---AIVFGRTKKRVDEVVEGLIKRGYSAEGIHGDVPQNKRDQVIRRFKEQTIDI 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V+  +I H+ 
Sbjct: 295 MVATDVAARGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAGKKGLAVTFVSPREIDHLK 354

Query: 359 AIEKLIEKKV 368
            IE++ + K+
Sbjct: 355 LIERVTKTKM 364


>gi|91783626|ref|YP_558832.1| putative ATP-dependent RNA helicase, rhlE [Burkholderia xenovorans
           LB400]
 gi|91687580|gb|ABE30780.1| Putative ATP-dependent RNA helicase, rhlE [Burkholderia xenovorans
           LB400]
          Length = 523

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 154/368 (41%), Positives = 224/368 (60%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  V D  Y  PTP+Q+K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 43  MSFALLGLIDPLLRNVQDLNYQTPTPVQVKAIPAVLGGRDVMAAAQTGTGKTAGFALPLL 102

Query: 61  T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +++ G A      R L+L PTRELA QV  +F  YGK  +L      GG+    Q  K
Sbjct: 103 QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIDYGKGLDLRFLAAYGGVSINPQMMK 162

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  + ++ ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 163 LRKGVDVLVATPGRLLDLNRQNAVQLDQVQTLVLDEADRMLDLGFARELNAVFAALPVRR 222

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT TD+++ ++   L++P  I V+ P++TA  I   +V T  + +K    +   
Sbjct: 223 QTLLFSATFTDDIRAMAAGILRDPVNISVSPPNATASKIRQ-WVVTVDKKNKPDLFMH-- 279

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L + +  ++ ++F   +  V  L   L+  G++V  IHG+  Q +R++ L  FK G +Q+
Sbjct: 280 LVAGNNWRHALVFVKTRNGVDYLAAMLDAAGYAVDTIHGDKPQPARLRALERFKTGEVQM 339

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 340 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 399

Query: 359 AIEKLIEK 366
           AIE LI +
Sbjct: 400 AIEALIRQ 407


>gi|254229918|ref|ZP_04923321.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262394827|ref|YP_003286681.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|151937554|gb|EDN56409.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262338421|gb|ACY52216.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
          Length = 402

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 150/362 (41%), Positives = 221/362 (61%), Gaps = 4/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M  + LGLS  +  AV   GY KPT IQ K IP+VL+  ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPISKLGLSASITDAVKALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G   R +  R +IL PTRELA QV  + E YGKN  L    + GG+ +  Q + L
Sbjct: 61  EKLSQGETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVDYAPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR++D + +  +  + +E+LV+DEAD+MLDMGFI  I  I   +P   Q
Sbjct: 121 IEGVDIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDAIDKIVDCMPEHVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT+++ ++ +++N + +P+ I +   S++   I+     T      K +LL  +L
Sbjct: 181 SLLFSATLSNPVRDLAKNAIIDPEEITIAKHSASKSNIKQWI--TTVDKDMKSSLLSHML 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D     ++F   K     L   LEK+G    A H   +QR R +++  FK G IQ +
Sbjct: 239 KEND-WSQVLVFIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI ++  V N+D+P  A+ Y+HRIGRTGRAG  G+A +LV+K+D K++  
Sbjct: 298 VATGVAARGIDIDNLPVVINYDLPYPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCM 357

Query: 360 IE 361
           IE
Sbjct: 358 IE 359


>gi|308172326|ref|YP_003919031.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605190|emb|CBI41561.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens DSM 7]
          Length = 511

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 151/369 (40%), Positives = 226/369 (61%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS  ++ ++   G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F +P++  
Sbjct: 22  FQDFQLSSDLMKSINRMGFEEATPIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIPLV-- 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            EK        + +++ PTRELA QV++   K G++    V  + GG     Q + L++ 
Sbjct: 80  -EKMNPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKN 138

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH NR  + +NN+  +V+DEAD ML+MGFI  I++I S VP   QTLL
Sbjct: 139 PHIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLL 198

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +++++E F+  P+ ++V     T   I+  ++    Q  KK   L +LL  Q
Sbjct: 199 FSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLE--VQERKKFDTLTRLLDIQ 256

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM  L  FKEG I+++VA+
Sbjct: 257 -SPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVAT 315

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFDVP   E+Y+HRIGRTGRAG+ G A T +   +   + AIE+
Sbjct: 316 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQ 375

Query: 363 LIEKKVDWL 371
             ++K+D +
Sbjct: 376 TTKRKMDRM 384


>gi|284035184|ref|YP_003385114.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
 gi|283814477|gb|ADB36315.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
          Length = 643

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 145/370 (39%), Positives = 229/370 (61%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L +SP+++ AV D G++ P+PIQ + IP +L   DV G AQTGTGKTA+F +P L +
Sbjct: 33  FSSLAISPELLQAVTDMGFISPSPIQAEAIPPILDGRDVIGQAQTGTGKTAAFGIPALDL 92

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++    + R  +TLIL PTRELA QVA+  +K  K    + +  + GG   E Q + L+ 
Sbjct: 93  ID---VQDRSVQTLILCPTRELALQVAEEIKKLAKYKRGIRIEAIYGGDSIERQIRSLKS 149

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR++DH  R  L +NN++++++DEAD MLDMGF   I++I   +P  RQT+
Sbjct: 150 GVHIVIGTPGRVMDHMERNTLKLNNVKMMILDEADEMLDMGFREDIESILEEMPEERQTI 209

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           LFSATM+  + ++++ F ++P  ++V     T   IE  +  V + A+    C L+    
Sbjct: 210 LFSATMSKPIMQITQKFQKDPVLVKVVKKELTNVNIEQVYFEVKSKAKVEVMCRLIDMY- 268

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +K  ++FCN K+ V  +   L+ +G+    +HG++ Q  R  ++S F+ GT  ++
Sbjct: 269 ----DLKLLLVFCNTKRKVDEIVEDLQIRGYQAEGLHGDLRQAQRNNVMSKFRAGTTNIL 324

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  V NFD+P   E Y+HRIGRTGRAG+ G+AF+ V +++      
Sbjct: 325 VATDVAARGIDVDDVDAVINFDIPLDEEYYVHRIGRTGRAGKSGRAFSFVGRDEKYRFRE 384

Query: 360 IEKLIEKKVD 369
           I+   + KV+
Sbjct: 385 IQTYTKVKVE 394


>gi|171319485|ref|ZP_02908588.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
 gi|171095294|gb|EDT40280.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
          Length = 481

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 154/366 (42%), Positives = 222/366 (60%), Gaps = 5/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  + D  Y  PTP+Q+K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIDPLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALPLL 60

Query: 61  T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             ++++G A      R L+L PTRELA QV  +F  YGK  +L      GG+    Q  K
Sbjct: 61  QRLVQQGSAVSSNRARVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + +E LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPVQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT TD+++ ++ + L++P  I V+ P+ TA  I+    A       K  L   L
Sbjct: 181 QTLLFSATFTDDIRTMAASILRSPVNISVSPPNVTASKIKQW--AVTVDKRNKPDLFMHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +++   + ++F   +  V  L   L++ G++V  IHG+  Q +R++ L  FK G +Q+
Sbjct: 239 V-AENNWDHALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLI 364
           AIE LI
Sbjct: 358 AIEALI 363


>gi|242051919|ref|XP_002455105.1| hypothetical protein SORBIDRAFT_03g004420 [Sorghum bicolor]
 gi|241927080|gb|EES00225.1| hypothetical protein SORBIDRAFT_03g004420 [Sorghum bicolor]
          Length = 673

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 145/369 (39%), Positives = 225/369 (60%), Gaps = 8/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G   +++  VL AG+  PTPIQ ++ P+ ++  D+  +A+TG+GKT  ++LP  
Sbjct: 157 MTFQSTGFPSEILREVLQAGFSAPTPIQAQSWPIAIKGRDIVAVAKTGSGKTLGYLLPGF 216

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L++ +   R  P  L+L PTRELA Q+ D   K+G++  ++   L GG P   Q ++L
Sbjct: 217 ILLKRLQHNSREGPTVLVLSPTRELATQIQDEAIKFGRSSRISSTCLYGGAPKGPQLREL 276

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGADV++ TPGR+ D     K+ +  +  LV+DEADRMLDMGF P I+ I   +P  RQ
Sbjct: 277 ERGADVVVATPGRLNDILEMNKVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKQIPPRRQ 336

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEV-NTPSSTA--ETIEHCFVATYAQYSKKCALLQ 236
           TL+++AT   E+++++ + L NP ++ + NT    A     +H  V  + + S++   L 
Sbjct: 337 TLMYTATWPKEVRRIASDLLNNPVQVNIGNTDQLVANKSITQHVEVIPHMEKSRR---LD 393

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q+L+SQD     IIFC+ K+    L  +L +Q +   AIHG+  Q  R  +L++F+ G  
Sbjct: 394 QILRSQDPGSKIIIFCSTKRMCDQLARNLSRQ-YGASAIHGDKSQSERDSVLNDFRSGRC 452

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G A+T    +D K+
Sbjct: 453 PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGSAYTFFGDQDSKY 512

Query: 357 IDAIEKLIE 365
              + K++E
Sbjct: 513 ASDLVKILE 521


>gi|332971571|gb|EGK10521.1| ATP-dependent RNA helicase [Kingella kingae ATCC 23330]
          Length = 481

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 148/368 (40%), Positives = 219/368 (59%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L   ++ A+  AGY  PTPIQ++ IP  L   D+   AQTG+GKTA+F+LP L  
Sbjct: 25  FSDLNLDKNILSALKSAGYDSPTPIQMQAIPAALDNRDIMASAQTGSGKTAAFLLPSLQK 84

Query: 63  L-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
           L ++     + PR L+L PTRELAAQV  N + Y +N   L    L+GG  F  Q K L 
Sbjct: 85  LTQRSEKSGKSPRVLVLTPTRELAAQVEKNAQIYSQNMKWLRSVTLVGGSSFGQQIKALS 144

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R  DV++ TPGR++DH   G++  + +E+LV+DEADRMLDMGFI  I+ I +  P  RQT
Sbjct: 145 RPIDVIVATPGRLMDHMRSGRIDFDRLEVLVLDEADRMLDMGFIDDIETIVAATPEDRQT 204

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    + K++    +NP+ IE+       +  E         +  K  LL  +L+
Sbjct: 205 LLFSATWDGAVGKLARKLTKNPEVIEIEREDKQGKIEEQLLYCDDKNH--KNRLLDHILR 262

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +   +IF + K     L   L ++GF+   +HG++ Q  R + L + ++G  +++V
Sbjct: 263 DAN-IDQCVIFTSTKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILV 321

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A +     +   +  I
Sbjct: 322 ATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRSGIAISFAEVNEYMAVHKI 381

Query: 361 EKLIEKKV 368
           E+ I  K+
Sbjct: 382 ERYINHKL 389


>gi|320093766|ref|ZP_08025614.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979303|gb|EFW10798.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 800

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 150/370 (40%), Positives = 217/370 (58%), Gaps = 14/370 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL  +++ AV D G+V PTPIQ + IP +L   DV GIAQTGTGKTA+F LP+L I
Sbjct: 52  FADLGLPDELLQAVTDMGFVTPTPIQAEAIPPLLDLRDVVGIAQTGTGKTAAFGLPLLAI 111

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121
           ++   A  +  + L+L PTRELA Q A   E +  +   L V  + GG P+  Q   L+R
Sbjct: 112 VD---ADEKAVQALVLAPTRELAMQSAAAIEDFAARTAELVVVPVYGGSPYGPQIGALKR 168

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++D   +G L ++ + +LV+DEAD ML MGF   ++ I S  P  R T 
Sbjct: 169 GAQVVVGTPGRVIDLIEKGALDLSGVRMLVLDEADEMLRMGFAEDVETIASSAPDDRLTA 228

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++KV+   L++P ++ V+  SST +TI   +      Y  K   L ++L +
Sbjct: 229 LFSATMPPAIEKVAREHLKDPVKVAVSEESSTVDTIHQTYAVV--PYKHKIGALSRVLAT 286

Query: 242 --------QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                   Q+     I+F   + +V  +   L  +GF    I G++ Q  R +++   K 
Sbjct: 287 RAQHIAAGQEDADAAIVFVRTRVDVEEVSLELSGRGFRAAGISGDVAQTERERMVERLKS 346

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G++ ++VA+D+AARGLD+  +  V NFDVP   E Y+HRIGRTGRAGR G++ T     +
Sbjct: 347 GSLDVLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTGRAGRQGRSLTFFTPRE 406

Query: 354 IKHIDAIEKL 363
              +  IEKL
Sbjct: 407 HTRLRRIEKL 416


>gi|167628080|ref|YP_001678580.1| DEAD/DEAH box helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|241668618|ref|ZP_04756196.1| DEAD-box subfamily ATP-dependent helicase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254877152|ref|ZP_05249862.1| ATP-dependent RNA helicase deaD [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|167598081|gb|ABZ88079.1| DEAD-box subfamily ATP-dependent helicase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|254843173|gb|EET21587.1| ATP-dependent RNA helicase deaD [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 581

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 144/363 (39%), Positives = 228/363 (62%), Gaps = 5/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGL+  ++  V+  GY  PTPIQ   IP +L   DV G AQTGTGKTA+F LP++ 
Sbjct: 8   DFSQLGLNQDIIDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++   +R R P+ L+L PTRELA QVA+ F+ + KN  NL VA + GG  + +Q + L+
Sbjct: 68  NMDL-ESRDRAPQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQIRALK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ T GR++DH  +G L ++N+  LV+DEAD ML MGFI  ++ + S V    Q 
Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHVSDECQR 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++  + + +L+NP +I+V   + TA T+   F+       +K   L +LL+
Sbjct: 187 LLFSATIPTDIADIIQEYLRNPCKIQVKAKTKTANTVTQKFIVIKG--FRKIDALDRLLE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++T    IIF   K + + +  +L+  G+ V AI+G++ Q  R  I+  F+     ++V
Sbjct: 245 VEET-DGVIIFVKTKTSTIEVADNLKALGYRVAAINGDMQQSQREYIVDQFRSAKSDVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+  + HV N+D+PN ++ Y+HRIGRTGRAGR G + +LV  ++++ +  +
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDSDTYVHRIGRTGRAGREGISISLVPLKEMRFLRTL 363

Query: 361 EKL 363
           E+ 
Sbjct: 364 ERF 366


>gi|329295987|ref|ZP_08253323.1| ATP-dependent RNA helicase RhlE [Plautia stali symbiont]
          Length = 408

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 161/371 (43%), Positives = 237/371 (63%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVAEQGYREPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLL 60

Query: 61  TILEK--GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L +    AR R P R LIL PTRELAAQV +N  +Y +  N+   ++ GG+    Q  
Sbjct: 61  QRLSEKPAAARGRRPVRALILTPTRELAAQVGENVREYSQYLNMRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVLI TPGR+LD  ++  + ++ +EILV+DEAD MLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLIATPGRLLDLAHQNAVDLSQVEILVLDEADCMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++E  L NP+++EV   ++ +E +       +    +K  LL  
Sbjct: 181 RQNLLFSATFSDEIKALAEKLLTNPEQVEVARRNTASEQVSQQV--HFVDKKRKRELL-S 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+  +D  +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK G I+
Sbjct: 238 LMIGRDNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN AE+Y+HRIGRTGRA   G A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGAALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKV 368
             IE+L+++++
Sbjct: 358 RDIERLLKREI 368


>gi|237713858|ref|ZP_04544339.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409233|ref|ZP_06085777.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645798|ref|ZP_06723482.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CC 2a]
 gi|294809471|ref|ZP_06768175.1| ATP-dependent RNA helicase RhlE [Bacteroides xylanisolvens SD CC
           1b]
 gi|229446014|gb|EEO51805.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352980|gb|EEZ02076.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638877|gb|EFF57211.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CC 2a]
 gi|294443343|gb|EFG12106.1| ATP-dependent RNA helicase RhlE [Bacteroides xylanisolvens SD CC
           1b]
          Length = 374

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 152/371 (40%), Positives = 232/371 (62%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L ++  ++ A+ + GY  PTPIQ K IP  L + D+ G AQTGTGKTASF +P++
Sbjct: 1   MTFKELNITEPILKAIGEKGYTVPTPIQEKAIPPALAKRDILGCAQTGTGKTASFAIPII 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               L+K  AR +  + LIL PTRELA Q+++  + Y K+  +   ++ GG+    Q   
Sbjct: 61  QHLQLDKEAARRQGIKALILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVDL 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD  ++G + ++ I+  V+DEADRMLDMGFI  I+ I   +P  +
Sbjct: 121 LRKGIDILVATPGRLLDLMSQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM D +  ++++ L+NP +I +   SST ++I+   +  + +  +K  LL  +
Sbjct: 181 QTLFFSATMPDSIISLTKSLLKNPVKIYITPKSSTVDSIKQ--LVYFVEKKEKSQLLISI 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S+   ++ +IF   K N   +   L K G    AIHGN  Q +R   L NFK G  ++
Sbjct: 239 L-SKAEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A T  ++E+ K ++
Sbjct: 298 MVATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNMGTALTFCSQEERKLVN 357

Query: 359 AIEKLIEKKVD 369
            I+KL  KK++
Sbjct: 358 DIQKLTGKKLN 368


>gi|170725001|ref|YP_001759027.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169810348|gb|ACA84932.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 605

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 230/371 (61%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ A+ + GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L  
Sbjct: 8   FRELGLSEPLLRALDELGYEKPTPIQAASIDPLMANKDILGQAQTGTGKTGAFALPLLNS 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++        P+ L+L PTRELA QVA+ F  Y K    + V  + GG   + Q   L R
Sbjct: 68  ID---PTTNAPQILVLAPTRELAVQVAEAFASYSKFMKGMHVLPIYGGQSMQQQLNSLRR 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH  RG L +  ++ +V+DEAD ML MGFI  I+ I    P  RQ  
Sbjct: 125 GPQIIVGTPGRVMDHMRRGTLKLATLKAMVLDEADEMLKMGFIDDIEWILEHTPQERQLA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +++++V+  +L NP  +++   ++T ETIE  FV   +Q++K  AL++ +L+ 
Sbjct: 185 LFSATMPEQIKRVANKYLDNPVHVKIAATTTTVETIEQRFVQV-SQHNKLEALVR-VLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T +  IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++A
Sbjct: 243 EKT-EGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIIIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +GHV N+D+P   E Y+HRIGRTGRAGR G A   V   +++ +  IE
Sbjct: 302 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIE 361

Query: 362 KLIEKKVDWLN 372
           +  + ++  ++
Sbjct: 362 RATKSRISPMD 372


>gi|107103467|ref|ZP_01367385.1| hypothetical protein PaerPA_01004537 [Pseudomonas aeruginosa PACS2]
          Length = 449

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 150/366 (40%), Positives = 224/366 (61%), Gaps = 5/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   G+  PTPIQ + IP  L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               LE  +      R L+L PTRELA QV  +   YG++  L  A+  GG+    Q  K
Sbjct: 61  QRLTLEGPQVAANSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD + +  +    ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D ++ ++   L++P  IEV+  ++ A+++    V       +K  L   L
Sbjct: 181 QTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPV--DKKRKAELFCHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ+ +     ++F   +K+V  L   L++QG +  +IHG+  Q +R++ L  FK G + L
Sbjct: 239 LQA-NRWHQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDL 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLA 357

Query: 359 AIEKLI 364
           AIE LI
Sbjct: 358 AIETLI 363


>gi|225452412|ref|XP_002273908.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1226

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 146/367 (39%), Positives = 223/367 (60%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G  P+++  V  AG+  PTPIQ ++ P+ LQ  D+  IA+TG+GKT  +++P    
Sbjct: 164 FESTGFPPEIIREVYSAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIH 223

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L++ R   +M P  L+L PTRELA Q+ D   K+G++  L+   L GG P   Q + L+R
Sbjct: 224 LKRIRNNPQMGPTVLVLSPTRELATQIQDEAVKFGRSSRLSCTCLYGGAPKGPQLRDLDR 283

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GAD+++ TPGR+ D     ++ +  +  LV+DEADRMLDMGF P I+ I   VP  RQTL
Sbjct: 284 GADIVVATPGRLNDILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTL 343

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQL 238
           +++AT   E++K++ + L NP ++ +    +  E + +  +  Y +   Y +K   L+Q+
Sbjct: 344 MYTATWPKEVRKIAADLLVNPVQVNI---GNVDELVANKAITQYVEVLPYMEKHKRLEQI 400

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+SQ+     IIFC+ KK    L  +L +  F   AIHG+  Q  R  +L+ F+ G   +
Sbjct: 401 LRSQEPGSKIIIFCSTKKMCDQLARNLTRP-FGAAAIHGDKSQGERDYVLNQFRTGRSPV 459

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G A+T  A++D K+  
Sbjct: 460 LVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFAEQDAKYAS 519

Query: 359 AIEKLIE 365
            + K++E
Sbjct: 520 DLVKVLE 526


>gi|126179703|ref|YP_001047668.1| DEAD/DEAH box helicase domain-containing protein [Methanoculleus
           marisnigri JR1]
 gi|125862497|gb|ABN57686.1| DEAD/DEAH box helicase domain protein [Methanoculleus marisnigri
           JR1]
          Length = 527

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 146/367 (39%), Positives = 227/367 (61%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L +SPK + A+ D G+ +PTPIQ+ TIP +L   DV G AQTGTGKTA+F +P +  
Sbjct: 7   FQELNISPKTLRAIEDMGFEEPTPIQVSTIPAILDGRDVTGQAQTGTGKTAAFGVPAIER 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++ G    R  + L+L PTRELA Q A+ F +  K++  + +  + GG P + Q + L+R
Sbjct: 67  VDTGS---RETQVLVLSPTRELAIQTAEEFSRLAKHHQGINILPIYGGQPIDRQFRALQR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH +RG L    ++++V+DEAD+MLDMGF   I+ I    P  RQT+
Sbjct: 124 GVQIVVGTPGRVLDHLDRGTLSFGAVKVVVLDEADQMLDMGFREDIEKILDDTPRDRQTI 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   + ++S+ F +NP+ I V     T   IE  ++   ++   +  +L +LL  
Sbjct: 184 LFSATLPKPILEISKKFQKNPEFISVARKEVTVPQIEQLYLEVRSR--DRLEILTRLLDM 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D     +IF N K+ V +L   L+ +G+    +HG++ Q  R ++++ F+ G+I ++VA
Sbjct: 242 YDPDLT-LIFSNTKRGVDDLTTHLQARGYFAEGLHGDMKQTLRDRVMAKFRAGSIDILVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  V N+DVP   E YIHRIGRT RAGR G+A T V  ++   +  I+
Sbjct: 301 TDVAARGIDVEDVDLVINYDVPQDIEYYIHRIGRTARAGRTGRAVTFVGPKEYFKLRTIQ 360

Query: 362 KLIEKKV 368
              + K+
Sbjct: 361 NYTKIKI 367


>gi|170717335|ref|YP_001784445.1| DEAD/DEAH box helicase domain-containing protein [Haemophilus
           somnus 2336]
 gi|168825464|gb|ACA30835.1| DEAD/DEAH box helicase domain protein [Haemophilus somnus 2336]
          Length = 601

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 146/369 (39%), Positives = 236/369 (63%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV + G+  P+PIQ   IP +L  HDV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FNDLGLPEFILNAVSEMGFSTPSPIQQACIPHLLNGHDVLGMAQTGSGKTAAFSLPLLAK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++      + P+ L++ PTRELA QVAD  E++ K +  + +  L GG  ++ Q + L++
Sbjct: 68  IDTNE---KYPQMLVMAPTRELAIQVADACEQFVKFSKGVRIVTLYGGQRYDIQLRALKQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRILDH  RG L ++N++ +V+DEAD ML MGFI  ++ + + +P   QT 
Sbjct: 125 GAQVVVGTPGRILDHIRRGTLDLSNLQSIVLDEADEMLRMGFIDDVETVMAELPEQHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQ 240
           LFSATM   ++++++ F+ NP+ +++ +   TA  I + C+   Y +  +K   L + L+
Sbjct: 185 LFSATMPAPIKRITKRFMHNPQEVKIQSTQRTAPDITQSCW---YVRGFRKNEALLRFLE 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++V
Sbjct: 242 VED-FDAAIIFTRTKTATLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V  ++ + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRAGRAILFVEPKERRLLGNI 360

Query: 361 EKLIEKKVD 369
           E+L++K ++
Sbjct: 361 ERLMKKAIE 369


>gi|227495476|ref|ZP_03925792.1| superfamily II helicase [Actinomyces coleocanis DSM 15436]
 gi|226831023|gb|EEH63406.1| superfamily II helicase [Actinomyces coleocanis DSM 15436]
          Length = 616

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 149/372 (40%), Positives = 225/372 (60%), Gaps = 9/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   V+ A+ + G+  PTPIQ + IP +L+  D+ GIAQTGTGKTA+F LPML  
Sbjct: 7   FADLNLPENVLSAITEMGFETPTPIQEQAIPHLLEGRDIVGIAQTGTGKTAAFGLPMLAH 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++ G   V+    ++L PTRELA Q A   E +  +   + V  + GG  +  Q K L+ 
Sbjct: 67  IDPGFNAVQ---AIVLAPTRELAMQSATAIESFAAHMPKVKVVTVYGGASYTPQIKGLKS 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQ 179
           GA V++ TPGR++D   +G L +NN+ +LV+DEAD ML MGF   ++ I + +P +  R 
Sbjct: 124 GAQVVVGTPGRVIDLIEKGALKLNNVSVLVLDEADEMLRMGFAEDVETIAASMPESGKRI 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM D +Q+V++  L +P RIEV   SST E I   +      +  K   L ++L
Sbjct: 184 TALFSATMPDFIQRVADQHLTDPVRIEVARQSSTVENIHQTYAVV--PFKHKLGALGRVL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++D     I+F   + +   +   +  +GF+  AI G++ Q  R +I+S  ++G++ ++
Sbjct: 242 ATRDE-DAAIVFVRTRVDADEVAVDMATRGFTAAAISGDVSQNERERIVSRLRDGSLDVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +G V NFDVP   E Y+HR+GRTGRAGR G++ T    ++   +  
Sbjct: 301 VATDVAARGLDVERIGLVINFDVPRETEAYVHRVGRTGRAGRAGRSLTFFTPKEQFRLRQ 360

Query: 360 IEKLIEKKVDWL 371
           IEKL   K++ +
Sbjct: 361 IEKLTGTKMEEI 372


>gi|58581173|ref|YP_200189.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84623095|ref|YP_450467.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|58425767|gb|AAW74804.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84367035|dbj|BAE68193.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 634

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 146/373 (39%), Positives = 227/373 (60%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV + GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 11  FADLGLSGAVMRAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
            +  + +   P+ L+L PTRELA QVA+ F+KY +      V  + GG P+  Q   L+R
Sbjct: 71  ADLNQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P  + +   ++T+  I   +   +     K   L ++L+ 
Sbjct: 188 LFSATMPPAIRRIAQTYLKDPAEVIIAAKTTTSANIRQRY--WWVSGLHKLDALTRILEV 245

Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   IIF   K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++
Sbjct: 246 EPFDGM---IIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDIL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A   V   +   + +
Sbjct: 303 VATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTLREKGMLRS 362

Query: 360 IEKLIEKKVDWLN 372
           IE+   + ++ + 
Sbjct: 363 IERATRQPIEEMQ 375


>gi|118444591|ref|YP_877094.1| ATP-dependent RNA helicase [Clostridium novyi NT]
 gi|118135047|gb|ABK62091.1| ATP-dependent RNA helicase [Clostridium novyi NT]
          Length = 528

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 150/369 (40%), Positives = 228/369 (61%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L +S ++  A+ D G+ +P+PIQ K IP +L   D+ G AQTGTGKTA+F +P L
Sbjct: 4   IKFENLPISDEIKSAIADMGFEEPSPIQEKAIPFILSGKDIIGQAQTGTGKTAAFGIPAL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
             ++     +++   ++L PTRELA Q      K GK    L V  + GG P + Q K L
Sbjct: 64  DTIDLNNRNLQI---MVLCPTRELAIQATQEITKLGKYKKGLNVLAIYGGQPIDRQIKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  ++I TPGR++DH NR  L  +NI+++V+DEAD MLDMGF   I+ I   VP  RQ
Sbjct: 121 KRGVQIVIGTPGRVIDHINRKTLKTDNIKMVVLDEADEMLDMGFRDDIETIIQSVPENRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + ++S+ +    + I+V     T   IE  ++     +  K  +L +L+
Sbjct: 181 TILFSATMPKAIVELSKKYQTKAEFIKVVHRQLTVPNIEQRYIEVKENF--KIEVLSRLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  +IFCN KK V  +   L+ +G+    +HG++ Q  R +++S F+ GTI+++
Sbjct: 239 DMRNP-KLSVIFCNTKKRVDEVVSELQSRGYFAEGLHGDMKQPQRDRVMSKFRNGTIEIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G AFT VA + ++ +  
Sbjct: 298 VATDVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRSGIAFTFVAGKAMRKLRD 357

Query: 360 IEKLIEKKV 368
           IE+  + K+
Sbjct: 358 IERYTKTKI 366


>gi|154684961|ref|YP_001420122.1| YdbR [Bacillus amyloliquefaciens FZB42]
 gi|154350812|gb|ABS72891.1| YdbR [Bacillus amyloliquefaciens FZB42]
          Length = 511

 Score =  283 bits (725), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 151/369 (40%), Positives = 226/369 (61%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS  ++ ++   G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F +P++  
Sbjct: 22  FQDFQLSSDLMKSINRMGFEEATPIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIPLV-- 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            EK        + +++ PTRELA QV++   K G++    V  + GG     Q + L++ 
Sbjct: 80  -EKMNPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKN 138

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH NR  + +NN+  +V+DEAD ML+MGFI  I++I S VP   QTLL
Sbjct: 139 PHIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSDHQTLL 198

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +++++E F+  P+ ++V     T   I+  ++    Q  KK   L +LL  Q
Sbjct: 199 FSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLE--VQERKKFDTLTRLLDIQ 256

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM  L  FKEG I+++VA+
Sbjct: 257 -SPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVAT 315

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFDVP   E+Y+HRIGRTGRAG+ G A T +   +   + AIE+
Sbjct: 316 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQ 375

Query: 363 LIEKKVDWL 371
             ++K+D +
Sbjct: 376 TTKRKMDRM 384


>gi|307352826|ref|YP_003893877.1| DEAD/DEAH box helicase domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307156059|gb|ADN35439.1| DEAD/DEAH box helicase domain protein [Methanoplanus petrolearius
           DSM 11571]
          Length = 536

 Score =  283 bits (725), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 145/366 (39%), Positives = 235/366 (64%), Gaps = 11/366 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L +SP+++ A+ D G+ +PTPIQ ++IPL+L   DV G AQTGTGKTA+F +P++
Sbjct: 5   LKFNELNISPEILRAIEDMGFEEPTPIQQRSIPLILSGRDVTGQAQTGTGKTAAFAIPLI 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
             +E  +  V+   +++L PTREL  Q+++ F +  K   ++ V  + GG   E Q  +L
Sbjct: 65  EKIEPEKCSVQ---SIVLSPTRELTIQISEEFNRLLKYRKDIRVLPVYGGQAIERQLHEL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G  ++I TPGR++DH  RG L ++ I+ +V+DEAD+ML+MGF   ++ I S  P  RQ
Sbjct: 122 KKGVHIIIGTPGRVMDHMKRGTLSLSGIKTVVLDEADQMLEMGFREDMEEILSKAPGERQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + K+S++F + P+ + +N    T   IE  ++    +   K  +L +L+
Sbjct: 182 TILFSATMPKPILKISKSFQKKPEFVTINPGQLTVPLIEQKYLEVREK--DKLEVLCRLI 239

Query: 240 Q--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              S D     +IFCN KK V  L   L  +G+    +HG++ Q+ R +++S F+ G+I 
Sbjct: 240 DINSSDL---SMIFCNTKKAVDELSEMLRSRGYFAEGLHGDMKQQQRDRVMSRFRSGSID 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARG+DI D+  V+N+DVP   E YIHRIGRTGRAG+ G ++T V+ ++I  +
Sbjct: 297 ILIATDVAARGIDIDDIDVVYNYDVPQDVEYYIHRIGRTGRAGKSGMSYTFVSPKEIYKL 356

Query: 358 DAIEKL 363
             I+K+
Sbjct: 357 RMIKKI 362


>gi|113460849|ref|YP_718916.1| ATP-dependent RNA helicase [Haemophilus somnus 129PT]
 gi|112822892|gb|ABI24981.1| ATP-dependent RNA helicase CsdA [Haemophilus somnus 129PT]
          Length = 601

 Score =  283 bits (725), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 146/369 (39%), Positives = 236/369 (63%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV + G+  P+PIQ   IP +L  HDV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FNDLGLPEFILNAVSEMGFSTPSPIQQACIPHLLNGHDVLGMAQTGSGKTAAFSLPLLAK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++      + P+ L++ PTRELA QVAD  E++ K +  + +  L GG  ++ Q + L++
Sbjct: 68  IDTNE---KYPQMLVMAPTRELAIQVADACEQFVKFSKGVRIVTLYGGQRYDIQLRALKQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRILDH  RG L ++N++ +V+DEAD ML MGFI  ++ + + +P   QT 
Sbjct: 125 GAQVVVGTPGRILDHIRRGTLDLSNLQSIVLDEADEMLRMGFIDDVETVMAELPEQHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQ 240
           LFSATM   ++++++ F+ NP+ +++ +   TA  I + C+   Y +  +K   L + L+
Sbjct: 185 LFSATMPAPIKRITKRFMHNPQEVKIQSTQRTAPDITQSCW---YVRGFRKNEALLRFLE 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++V
Sbjct: 242 VED-FDAAIIFTRTKTATLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V  ++ + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRAGRAILFVEPKERRLLGNI 360

Query: 361 EKLIEKKVD 369
           E+L++K ++
Sbjct: 361 ERLMKKAIE 369


>gi|119718818|ref|YP_925783.1| DEAD/DEAH box helicase domain-containing protein [Nocardioides sp.
           JS614]
 gi|119539479|gb|ABL84096.1| ATP-dependent RNA helicase CsdA [Nocardioides sp. JS614]
          Length = 589

 Score =  283 bits (725), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 146/360 (40%), Positives = 220/360 (61%), Gaps = 10/360 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS +V+ A+ D GY KP+ IQ  TIP +L   DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 16  FADLGLSDQVLKALADVGYEKPSAIQAATIPPLLAGRDVVGLAQTGTGKTAAFALPILSR 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+  +     P+ L+L PTRELA QV + FE+Y  +   + V  + GG  +  Q   L R
Sbjct: 76  LDLTQT---TPQALVLAPTRELALQVCEAFERYAAHVKGVHVLPVYGGQGYGVQLSALRR 132

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGRI+DH  +G L ++ +  LV+DEAD ML+MGF   ++ I +  P  +   
Sbjct: 133 GVHVVVGTPGRIMDHLEKGTLDLSELRFLVLDEADEMLNMGFAEDVETILADTPDDKNVA 192

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  +++++S+ +L +P  I V   ++TA  I   ++     Y +K   L ++L+ 
Sbjct: 193 LFSATMPAQIRRISKKYLDDPAEITVKGKTATASNITQRYLTV--SYPQKVDALTRILEV 250

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++  +  I+F   K     L   L  +G S  AI+G++ Q  R + ++  K G + ++VA
Sbjct: 251 EN-FEGMIVFVRTKNETETLAEKLRARGLSAMAINGDVAQAQRERTVNQLKSGKLDILVA 309

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A + V   +   +KHI+
Sbjct: 310 TDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFVTPRERYLLKHIE 369


>gi|114765123|ref|ZP_01444268.1| putative ATP-dependent RNA helicase protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114542527|gb|EAU45553.1| putative ATP-dependent RNA helicase protein [Roseovarius sp.
           HTCC2601]
          Length = 430

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 146/375 (38%), Positives = 226/375 (60%), Gaps = 5/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGL+P +  A+   G+ +PTPIQ + IPL L+ HDV G+AQTGTGKT +F LP++ 
Sbjct: 3   DFDMLGLAPTLSEALKRNGFSEPTPIQNQAIPLALEGHDVLGLAQTGTGKTLAFGLPLID 62

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L  + G+   +  + L+L PTREL  Q+AD+  +      L V  ++GG     Q   L
Sbjct: 63  GLLAQPGKPAPKTVKALVLAPTRELVNQIADSLRQLTDGTKLRVGTVVGGQSINRQINFL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR++D  +R  + ++ +  LV+DEAD+MLDMGFI  ++ I   +   RQ
Sbjct: 123 SRGTDILVATPGRLIDLMDRKAVDLSTVRQLVLDEADQMLDMGFIHALRRIAPQLGTPRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  +++++S  +L NP+R++V+ P   A+ I       +   + K + L++LL
Sbjct: 183 TMLFSATMPKQMEELSSAYLTNPRRVQVSPPGKAADKITQSV--HFVDKAGKPSKLRELL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     ++F   K     L   L   G++  +IHGN  Q  R + +  F++G I ++
Sbjct: 241 GRDDESLT-LVFARTKHGAERLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRDGDINVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V +V N+D+P   +NY+HRIGRT RAGR G+A    A ++   +  
Sbjct: 300 VATDVAARGIDIPGVAYVVNYDLPEVPDNYVHRIGRTARAGREGEAIAFCAPDEADLLRQ 359

Query: 360 IEKLIEKKVDWLNGD 374
           I+KL++  +   +GD
Sbjct: 360 IQKLMKIDIPVASGD 374


>gi|325106943|ref|YP_004268011.1| DEAD/DEAH box helicase [Planctomyces brasiliensis DSM 5305]
 gi|324967211|gb|ADY57989.1| DEAD/DEAH box helicase domain protein [Planctomyces brasiliensis
           DSM 5305]
          Length = 399

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 145/384 (37%), Positives = 236/384 (61%), Gaps = 8/384 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLSP+ V  +   GY  P+PIQ   IP  L+  D  G +QTGTGKTA+F++P+L +
Sbjct: 19  FADLGLSPETVEHLKSVGYEHPSPIQRDFIPPALKGVDCLGQSQTGTGKTAAFMMPVLEL 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++ +     P+ L+L PTREL+ QVA   +K  +   L +A+++GG P +AQ +K+ERG
Sbjct: 79  LKEQQEE---PQALVLCPTRELSEQVAVEAQKISRFSKLEIAVVVGGRPLKAQMQKIERG 135

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR++D F R  L + NI + V+DEADRMLD+GF P ++ I    P  RQTLL
Sbjct: 136 VDVVVGTPGRVIDLFKRKSLSLKNIRLAVLDEADRMLDIGFRPDMEFILKQCPKERQTLL 195

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  E+++++  F+++P RI++   + TA+ +E  F  T  ++ K   L++ L+Q +
Sbjct: 196 LSATLPSEVERLANRFMKDPVRIDIEPQNVTADRVEQ-FYCTVDEHRKLQLLIKLLVQEK 254

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  I+FC  K+    L +  + +   V  +HG++ Q  R +++  F+ G +++++A+
Sbjct: 255 P--KQAIVFCRTKRKADQLYNKFQTRLDGVETLHGDLPQSKRDRVMKQFRAGKVRMLIAT 312

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH--GKAFTLVAKEDIKHIDAI 360
           D+  RG+D+  + H+ N+D+P  +++Y+HRIGR GR      G+AFT V +     +  I
Sbjct: 313 DIVGRGIDVGGISHIINYDIPEHSDDYVHRIGRAGRLSSEFSGRAFTFVTQGQGNELTKI 372

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L+ K +     D    + P E+
Sbjct: 373 ELLVNKLIPEYKLDGLETHTPRER 396


>gi|307153172|ref|YP_003888556.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp.
           PCC 7822]
 gi|306983400|gb|ADN15281.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7822]
          Length = 482

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 150/369 (40%), Positives = 224/369 (60%), Gaps = 5/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS   V  +   G+  PT IQ K IPL+L+ HDV G +QTGTGKTA++ LP+L
Sbjct: 3   ISFKNLGLSDARVQHLESIGFTNPTDIQQKAIPLLLEGHDVVGQSQTGTGKTAAYSLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++     R  + LIL PTRELA QVA   + +  +  L +  + GG   + Q + LE
Sbjct: 63  ERIDR---HSRSVQALILTPTRELAQQVAQAIKDFVDDRRLFILTVYGGQSIDRQIRSLE 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++D   R KL ++ +++ V+DEAD ML MGFI  ++ I    P TRQT
Sbjct: 120 RGVQIVVGTPGRVIDLLERKKLSLDELQMAVLDEADEMLSMGFIDDVKKILQQTPSTRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM  E++++ + FL++P  +      +T E I+         +SK  A LQ +L+
Sbjct: 180 ACFSATMPPEIKRLIDQFLKSPVVVSATQHEATPERIDQHIYMVPRGWSKLKA-LQPILE 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D  ++ IIF   K+    L   L++ G  V   HGN+ Q  R +++  F+EG I+L+V
Sbjct: 239 IEDP-ESAIIFVRTKQTATELTGKLQESGHHVDEYHGNLSQAQRERLVQRFREGKIKLVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV NFD+P+  E YIHRIGRTGRAG+ G A +L+   D + +  I
Sbjct: 298 ATDIAARGLDVEDLSHVINFDLPDNTETYIHRIGRTGRAGKTGTAISLIEPIDRRMLRQI 357

Query: 361 EKLIEKKVD 369
           E  +  ++D
Sbjct: 358 EHRVGHRLD 366


>gi|326801270|ref|YP_004319089.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21]
 gi|326552034|gb|ADZ80419.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21]
          Length = 442

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 155/370 (41%), Positives = 229/370 (61%), Gaps = 9/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D   + +++ A+ DA Y +PT IQ K I  +L   DV GIAQTGTGKTA++VLP+  I
Sbjct: 5   FEDFKFNRQILNAIADAEYKEPTAIQQKAITPILAGQDVMGIAQTGTGKTAAYVLPI--I 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++   A+   PR LIL PTRELA Q+ +N + + K  +L   +L GG+  + Q + LE+G
Sbjct: 63  MKLKYAQGSDPRALILSPTRELAMQIEENIQLFAKYTDLRTVVLYGGLGPKQQIEALEKG 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR LD +    +    I++LV+DEAD+M+DMGFI  I  I  ++P  RQ LL
Sbjct: 123 VDILVATPGRFLDLYLAEHINTKQIKLLVMDEADKMMDMGFIGKIHRILEVIPRKRQNLL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQLLQ 240
           FSATM++ + K++ +FL  P  +EV+  ++ A T+     FV        K  LLQ LL+
Sbjct: 183 FSATMSELVHKIAGDFLAFPTIVEVSPQATPANTVSQQLYFVPN---TKTKINLLQYLLK 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGF--SVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +     IIF   K    N+ H L ++     V  IH N  Q +R+  ++ FKEG++++
Sbjct: 240 NDEDFHRLIIFSKTKTIADNIYHFLSRKYGEDEVRVIHANKGQNTRINSINAFKEGSVRI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ DV HV NFD+P   E+Y+HRIGRTGRA + G A ++    +  +I 
Sbjct: 300 LVATDVAARGLDVSDVSHVINFDIPIVIEDYVHRIGRTGRATKSGIAISMCTPAEAYYIT 359

Query: 359 AIEKLIEKKV 368
            IEKLI +++
Sbjct: 360 KIEKLIRQQI 369


>gi|194336034|ref|YP_002017828.1| DEAD/DEAH box helicase domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308511|gb|ACF43211.1| DEAD/DEAH box helicase domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 599

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 144/374 (38%), Positives = 229/374 (61%), Gaps = 11/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  L L+  ++ A+ D GY  PTPIQ +TIPL+L+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MDFLGLQLAEPLMRALADVGYENPTPIQAQTIPLILEGRDVLGQAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           + ++   A    P+ L+L PTRELA QVA+ F++Y ++     V  + GG  +  Q + L
Sbjct: 61  SNIDLEHAE---PQALVLAPTRELAIQVAEAFQRYAEHLKGFHVVPIYGGQDYGIQLRML 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG  +++ TPGR++DH  RG L + +++ LV+DEAD ML MGFI  ++ I    P  RQ
Sbjct: 118 RRGVHIVVGTPGRVMDHMRRGSLNLASLKCLVLDEADEMLRMGFIDDVEWILDQTPKGRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   ++++++ +L NP  + + T ++T +TI   +       S K  +L ++L
Sbjct: 178 VALFSATMPPVIRRIAQKYLHNPAEVTIQTKTTTVDTIRQRYWIVGG--SHKIDILTRIL 235

Query: 240 QSQ--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + +  D M   +IF   K   + L   L+ +G+   A++G++ Q  R + +   K G + 
Sbjct: 236 EVEPFDGM---LIFVRTKTMTLELAEKLQARGYGAAALNGDMPQNQRERTVDQLKNGALS 292

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  +   +
Sbjct: 293 IVIATDVAARGLDVERISHVINYDIPSDTESYVHRIGRTGRAGRAGDAILFVSPREKNML 352

Query: 358 DAIEKLIEKKVDWL 371
            +IE+    +++ +
Sbjct: 353 YSIERATHSRIELM 366


>gi|297828586|ref|XP_002882175.1| hypothetical protein ARALYDRAFT_477362 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328015|gb|EFH58434.1| hypothetical protein ARALYDRAFT_477362 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 625

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 222/369 (60%), Gaps = 8/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G   +++  VL+AG+  PTPIQ ++ P+ +Q  D+  IA+TG+GKT  +++P  
Sbjct: 164 MSFEATGFPSELLREVLNAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGF 223

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L++ R   RM P  L+L PTRELA Q+ +   K+G++  ++   L GG P   Q + L
Sbjct: 224 LHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDL 283

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGAD+++ TPGR+ D     ++ +  I  LV+DEADRMLDMGF P I+ I   +P  RQ
Sbjct: 284 ERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQ 343

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPS---STAETIEHCFVATYAQYSKKCALLQ 236
           TL+++AT    ++K++ + L NP ++ +       +     +H  V    +  ++   L+
Sbjct: 344 TLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRR---LE 400

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q+L+SQ+     IIFC+ K+    L  +L +Q F   AIHG+  Q  R  +L+ F+ G  
Sbjct: 401 QILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRT 459

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+ D+  V N+D PN  E+Y+HRIGRTGRAG  G+AFT    +D KH
Sbjct: 460 PVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKH 519

Query: 357 IDAIEKLIE 365
              + K++E
Sbjct: 520 ASDLIKILE 528


>gi|206579682|ref|YP_002236428.1| cold-shock DEAD box protein A [Klebsiella pneumoniae 342]
 gi|288933410|ref|YP_003437469.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
 gi|206568740|gb|ACI10516.1| cold-shock DEAD box protein A [Klebsiella pneumoniae 342]
 gi|288888139|gb|ADC56457.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
          Length = 643

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 143/377 (37%), Positives = 233/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     +R P+ L+L PTRELA QVA+   ++ K+   + V  L GG  ++ Q + L +
Sbjct: 68  ID---PELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   Y    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|170701192|ref|ZP_02892163.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170133898|gb|EDT02255.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 542

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 155/371 (41%), Positives = 221/371 (59%), Gaps = 15/371 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  + D  Y  PTP+Q+K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 62  MSFASLGLIAPLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALPLL 121

Query: 61  -------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                   ++   RARV     L+L PTRELA QV  +F  YGK  +L      GG+   
Sbjct: 122 QRLVQHGPVVSSNRARV-----LVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSIN 176

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q  KL +G DVL+ TPGR+LD   +  +  + +E LV+DEADRMLD+GF   +  + + 
Sbjct: 177 PQMMKLRKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAA 236

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQTLLFSAT TD+++ ++ + L++P  I V+ P+ TA  I+    A       K  
Sbjct: 237 LPVQRQTLLFSATFTDDIRTMAASILRSPVNISVSPPNVTASKIKQW--AVTVDKRNKPD 294

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L   L+ +++   + ++F   +  V  L   L++ G++V  IHG+  Q +R++ L  FK 
Sbjct: 295 LFMHLV-AENNWDHALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKT 353

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +Q++VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++
Sbjct: 354 GEVQMLVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADE 413

Query: 354 IKHIDAIEKLI 364
              + AIE LI
Sbjct: 414 APQLAAIEALI 424


>gi|150019837|ref|YP_001312091.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149906302|gb|ABR37135.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 525

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 150/370 (40%), Positives = 224/370 (60%), Gaps = 13/370 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   +V A+ D G+ KP+ IQ ++IP+ L   D+ G AQTGTGKTA++ LP++T 
Sbjct: 6   FATLGLKESIVKAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSLPIITK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +   R      ++LIL PTRELA QV +  ++  K   +    + GG   + Q + L +G
Sbjct: 66  MSDNRG----IKSLILAPTRELAVQVNEEIQRLSKYEKIVTLAVYGGDSIDRQIRALRKG 121

Query: 123 -ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGRILD   R  L + +IE LV+DEAD ML+MGFI  IQ I S  P  RQTL
Sbjct: 122 DVDIVVGTPGRILDLVKRKCLHLESIEFLVLDEADEMLNMGFIDDIQEILSHTPSERQTL 181

Query: 182 LFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKK--CALLQQL 238
           LFSATM D + K+++ +++ + K + +   S T   IE  +     ++  +  C LL   
Sbjct: 182 LFSATMPDPIAKLAKKYMKPDAKLVSIKRSSLTVSKIEQSYFMINNKHRLEALCRLLDL- 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               D   + IIFC  K+ V  L   L+ +G+ V  +HG++ Q  R+  L+ FKEGT+ L
Sbjct: 241 ----DNPSSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKEGTLNL 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+  V HVFN+D+P   E+Y+HRIGRTGRA + G A++LV  +D   + 
Sbjct: 297 LIATDVAARGIDVEGVTHVFNYDLPQDVESYVHRIGRTGRANKSGTAYSLVTPKDFSMLK 356

Query: 359 AIEKLIEKKV 368
            I+ + +  +
Sbjct: 357 QIQNVTKSSI 366


>gi|226312984|ref|YP_002772878.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226095932|dbj|BAH44374.1| probable ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 529

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 150/383 (39%), Positives = 236/383 (61%), Gaps = 13/383 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L   ++ A+ D G+ +P+PIQ   IP VL   D+ G AQTGTGKTA+F +P++  
Sbjct: 4   FSDFPLHKSILQAIHDMGFEEPSPIQAACIPKVLDGGDLIGQAQTGTGKTAAFGIPLVEK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +     RV+    ++L PTRELA QVA    +  K   +    + GG     Q + L +G
Sbjct: 64  ITPAN-RVQ---AIVLTPTRELAIQVAGELLRISKYNKVRTLPIYGGQSIGHQIRALRQG 119

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++DH  R  L ++++  LV+DEAD MLDMGFI  I+ I + +P  RQTLL
Sbjct: 120 VQIVVGTPGRVMDHLRRKTLKLDHVHTLVLDEADEMLDMGFIEDIETIINHMPDERQTLL 179

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+++++  +++ P+ I V+    TA  IE  +   + +   K   L ++L S+
Sbjct: 180 FSATMPPEIKRLATRYMKQPQTIAVSREEVTAPLIEQVYYKVFDR--NKVESLCRILDSE 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D ++ GIIFC  K+ V  L   L+ +G+    +HG++ Q  R K+++ F+EG+I+ ++A+
Sbjct: 238 D-VELGIIFCRTKRGVDELSEVLQSRGYLADGLHGDLSQAQRDKVMNAFREGSIEFLIAT 296

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+D+ +V HV N+D+P  +E+Y+HRIGRTGRAGR G A TLV   +++ +  I+K
Sbjct: 297 DVAARGIDVGNVSHVINYDIPQDSESYVHRIGRTGRAGRKGIAMTLVTPREVRQMMFIQK 356

Query: 363 LIEKKVDWLNGDLSSLNPPLEKI 385
             + +V      LS   P LE++
Sbjct: 357 QTKAQV------LSRNVPSLEEV 373


>gi|225022855|ref|ZP_03712047.1| hypothetical protein CORMATOL_02901 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944379|gb|EEG25588.1| hypothetical protein CORMATOL_02901 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 715

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 150/398 (37%), Positives = 241/398 (60%), Gaps = 25/398 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   VV AV + G+  P+PIQ +TIP++L  HDV G+AQTGTGKTA+F LP+L++
Sbjct: 81  FDTLGLPKPVVKAVENVGFETPSPIQAQTIPVLLDGHDVLGLAQTGTGKTAAFALPILSL 140

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKLE 120
           ++   A +R P+ LIL PTRELA QVAD+F+ +  + +  +++L   GG  +  Q   L 
Sbjct: 141 ID---AEIRHPQALILAPTRELALQVADSFQVFVDHLDGDISVLPIYGGQAYGIQLSGLR 197

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +++ TPGR++DH  +G L ++ +  LV+DEAD ML+MGF   ++ I +  P  +Q 
Sbjct: 198 RGAQIVVGTPGRVIDHLEKGSLDISELRFLVLDEADEMLNMGFQEDVERILADTPEEKQV 257

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++++S+ ++ +P  I+V + + T   I   F+     +  K   L ++L+
Sbjct: 258 ALFSATMPSGIRRLSKQYMNDPHEIQVKSETRTNTNITQRFL--NVAHRNKLDALTRILE 315

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K     L   L  +GF+  AI+G+I Q+ R + +   K+G + ++V
Sbjct: 316 VTE-FEAMIMFVRTKFETEELAEKLRARGFNAAAINGDIAQQQRERTVEQLKDGRLDILV 374

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 375 ATDVAARGLDVERISHVLNYDIPSDTESYVHRIGRTGRAGRSGEAILFVTPRERRFLRNI 434

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKID---IAQHNHARK 395
           E+              + N PL++++   + + N +RK
Sbjct: 435 ER--------------ATNAPLQEMELPTVDEVNESRK 458


>gi|167584411|ref|ZP_02376799.1| Putative ATP-dependent RNA helicase, rhlE [Burkholderia ubonensis
           Bu]
          Length = 481

 Score =  283 bits (724), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 154/368 (41%), Positives = 221/368 (60%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  V D  Y  PTP+Q+K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIDPLLRNVQDLDYQTPTPVQVKAIPAVLSGKDVMAAAQTGTGKTAGFALPLL 60

Query: 61  T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +++ G A      R L+L PTRELA QV  +F  YGK  +L +    GG+    Q  K
Sbjct: 61  QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIDYGKGLDLRLLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D+++ ++   L+ P +I V+ P++TA  I+   V        K  L   L
Sbjct: 181 QTLLFSATFSDDIRAMAAGILRGPVKISVSPPNATAGKIKQWVVPV--DKRNKPDLFMHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   D  K+ ++F   +K V  L   L++ G++V  IHG+  Q +R++ L  FK G + +
Sbjct: 239 VAEND-WKHALVFVKTRKGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVHM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  +  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDINGLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEK 366
           AIE LI +
Sbjct: 358 AIEALIRQ 365


>gi|330813838|ref|YP_004358077.1| cold-shock DEAD-box protein A [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486933|gb|AEA81338.1| cold-shock DEAD-box protein A [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 558

 Score =  283 bits (724), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 143/364 (39%), Positives = 229/364 (62%), Gaps = 9/364 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L L+  +  +++   +  PTPIQIK+IP++L++ D+   AQTGTGKTA+F +PM+ 
Sbjct: 3   NFQELNLNKNLNASLVKMKFDTPTPIQIKSIPIILEQKDILASAQTGTGKTAAFCIPMIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL-LIGGIPFEAQNKKLE 120
           ++    A  ++ R +IL PTRELA QV D  EK     ++  ++ L+GG P   Q ++L+
Sbjct: 63  MI----ATKKINRAIILVPTRELAKQVNDVIEKLLFQQSVIKSVCLVGGEPMNKQLRRLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ DH  R  LL+N +++L++DE DRMLDMGF   I  I   +P  +QT
Sbjct: 119 TKPQIVVGTPGRVNDHLKRKSLLLNKVDLLILDEMDRMLDMGFSIQIDEIIKFLPKQKQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+   ++++S+ +L N +R+ V   ++T  TI+   V    Q  K   L++Q+  
Sbjct: 179 LMFSATIAPSIERLSKKYLNNAERVSVAAANATLITIKQE-VINLRQEDKYNTLVEQVKT 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              +    ++F   K N   L  +LEK+GF   ++HGN+ Q  R ++++ F+   I ++V
Sbjct: 238 KHGST---LVFVKTKHNAKKLAKNLEKEGFESDSLHGNLRQNKRNQVIAKFRANKIHVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP + HV NFD+P +AE++IHR+GRTGRAG  G A++ V   D +    I
Sbjct: 295 ATDIAARGLDIPHIEHVVNFDLPQQAEDFIHRMGRTGRAGASGTAWSFVTPSDKRKWHEI 354

Query: 361 EKLI 364
           EK++
Sbjct: 355 EKIL 358


>gi|161506849|ref|YP_001576803.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus DPC
           4571]
 gi|160347838|gb|ABX26512.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus DPC
           4571]
          Length = 503

 Score =  283 bits (724), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 150/370 (40%), Positives = 239/370 (64%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+  ++ A+  +G+ + TPIQ +TIPL LQ  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +I +K +A   + + +I+EPTRELA Q  +   + G++ +  V ++ GG     Q + L
Sbjct: 61  QSIDKKEKAIQAIIQAIIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIRRQIRSL 120

Query: 120 ERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++ A  +L+ TPGR+LDH  RG + ++ +  +V+DEAD MLDMGFI  I++I       +
Sbjct: 121 KQHAPSILVGTPGRLLDHLKRGTIDLDKVNTVVLDEADEMLDMGFIKDIESILKYAKNCK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM   + ++ E F+++P  +++     TA+ I+  FV   A+ S+K  ++ +L
Sbjct: 181 QTLLFSATMPKPILRIGEKFMKDPAIVQIKAKELTADLIDQYFVR--AKESEKFDIMCRL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  Q      ++F   K+ V  L   L+ +G++   IHG++ Q  RM +L  F+EG + +
Sbjct: 239 IDVQGP-DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++ 
Sbjct: 298 LVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGVSVTFVTPNEIGYMR 357

Query: 359 AIEKLIEKKV 368
            IE+L +KK+
Sbjct: 358 TIEQLTKKKM 367


>gi|186473980|ref|YP_001861322.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184196312|gb|ACC74276.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 481

 Score =  283 bits (724), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 155/373 (41%), Positives = 225/373 (60%), Gaps = 11/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL  +++  V D  Y  PTP+Q+K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIDRLLRNVQDLHYQTPTPVQVKAIPAVLGGKDVMAAAQTGTGKTAGFALPLL 60

Query: 61  T-ILEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             +++ G A    RVR+   L+L PTRELA QV  +F  YGK  +L      GG+    Q
Sbjct: 61  QRLVQHGPAVSSNRVRV---LVLVPTRELAEQVLQSFVVYGKGLDLRFLAAYGGVSINPQ 117

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P
Sbjct: 118 MMKLRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALP 177

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT +D+++ ++ NFL+ P  I V+ P++TA  I    V        K  L 
Sbjct: 178 AQRQTLLFSATFSDDIRAMAANFLRGPVHISVSPPNATASKIRQWVVPV--DKRNKPDLF 235

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ +++   + ++F   +  V  L   L++ G++V  IHG+  Q +R++ L  FK G 
Sbjct: 236 MHLV-AENNWDHALVFVKTRTGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKAGQ 294

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGLDI  +  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++  
Sbjct: 295 VHMLVATDVAARGLDIDHLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAP 354

Query: 356 HIDAIEKLIEKKV 368
            + AIE LI + +
Sbjct: 355 QLAAIEALIRQTL 367


>gi|260102329|ref|ZP_05752566.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           helveticus DSM 20075]
 gi|260083862|gb|EEW67982.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           helveticus DSM 20075]
 gi|328463453|gb|EGF35104.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus MTCC
           5463]
          Length = 503

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 150/370 (40%), Positives = 239/370 (64%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+  ++ A+  +G+ + TPIQ +TIPL LQ  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +I +K +A   + + +I+EPTRELA Q  +   + G++ +  V ++ GG     Q + L
Sbjct: 61  QSIDKKEKAIQAIIQAIIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSL 120

Query: 120 ERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++ A  +L+ TPGR+LDH  RG + ++ +  +V+DEAD MLDMGFI  I++I       +
Sbjct: 121 KQHAPSILVGTPGRLLDHLKRGTIDLDKVNTVVLDEADEMLDMGFIKDIESILKYAKNCK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM   + ++ E F+++P  +++     TA+ I+  FV   A+ S+K  ++ +L
Sbjct: 181 QTLLFSATMPKPILRIGEKFMKDPAIVQIKAKELTADLIDQYFVR--AKESEKFDIMCRL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  Q      ++F   K+ V  L   L+ +G++   IHG++ Q  RM +L  F+EG + +
Sbjct: 239 IDVQGP-DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++ 
Sbjct: 298 LVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGVSVTFVTPNEIGYMR 357

Query: 359 AIEKLIEKKV 368
            IE+L +KK+
Sbjct: 358 TIEQLTKKKM 367


>gi|254225316|ref|ZP_04918928.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
 gi|125622157|gb|EAZ50479.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
          Length = 397

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 154/373 (41%), Positives = 223/373 (59%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V  V   GY KPT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YGK+  L    + GG+  +AQ ++L
Sbjct: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  +++P  I +    ++   I    +        K ALL  L+
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV--DKDTKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      +IF   K     L   LEK+G    A H    Q  R ++L +FK   I+ +
Sbjct: 239 NEQQ-WDQALIFIETKHGAAKLVSQLEKRGIYAEAFHSGRSQAIRAQLLEDFKSAKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357

Query: 360 IEK----LIEKKV 368
           IE     LIE++V
Sbjct: 358 IESRLGHLIERRV 370


>gi|148543481|ref|YP_001270851.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus
           reuteri DSM 20016]
 gi|184152890|ref|YP_001841231.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112]
 gi|227363631|ref|ZP_03847746.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
           MM2-3]
 gi|227544701|ref|ZP_03974750.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
           CF48-3A]
 gi|300909057|ref|ZP_07126520.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri SD2112]
 gi|325681826|ref|ZP_08161345.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri MM4-1A]
 gi|148530515|gb|ABQ82514.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri DSM
           20016]
 gi|183224234|dbj|BAG24751.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112]
 gi|227071342|gb|EEI09650.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
           MM2-3]
 gi|227185302|gb|EEI65373.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
           CF48-3A]
 gi|300894464|gb|EFK87822.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri SD2112]
 gi|324978917|gb|EGC15865.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri MM4-1A]
          Length = 498

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 143/363 (39%), Positives = 229/363 (63%), Gaps = 6/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+  +GY + TPIQ +TIP+VL+  DV G AQTGTGKTA+F LP++
Sbjct: 1   MKFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    +I+ PTRELA Q  +   + GK+ ++ V ++ GG     Q K L+
Sbjct: 61  ENVDTENLNIQ---AIIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGR+ DH NR  + +++I+ LV+DEAD ML+MGF+  I++I    P  RQT
Sbjct: 118 QHPQILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++++   F+ +P+ + +     T + ++  ++   A+  +K  ++ +L+ 
Sbjct: 178 LLFSATMPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYIR--ARDYEKFDIMTRLID 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     I+F   K+ V  L   L  +G++   IHG++ Q  R KI+  FK   + ++V
Sbjct: 236 VQDPDLT-IVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P+  ++Y+HRIGRTGRAG HG + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEI 354

Query: 361 EKL 363
           EKL
Sbjct: 355 EKL 357


>gi|163839675|ref|YP_001624080.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
 gi|162953151|gb|ABY22666.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
          Length = 652

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 145/372 (38%), Positives = 227/372 (61%), Gaps = 7/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL  +V+ A+ D GY KP+PIQ  TIP++L+  DV G+AQTGTGKTA+F LP L+ 
Sbjct: 46  FTDFGLDGRVLAALKDVGYEKPSPIQAATIPVLLEGRDVVGLAQTGTGKTAAFALPALSR 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +    A  +  + L+L PTRELA QVA+ F  Y  +  N +V  + GG  +  Q   L R
Sbjct: 106 MANLPA-TKDTQILVLAPTRELALQVAEAFSSYAAHMDNFSVLPVYGGSAYGPQLAGLRR 164

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH ++G L ++N++ LV+DEAD ML MGF   ++ I +  P  +Q  
Sbjct: 165 GAQVVVGTPGRVIDHLSKGSLDLSNLQYLVLDEADEMLRMGFADDVEQILAETPEDKQVA 224

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  +++++++ +L NP  I V   ++T E     ++     +  K   + ++L+ 
Sbjct: 225 LFSATMPGQIRRIAKKYLNNPAEISVKAKTTTGENTRQRYLQVMGPH--KLDAMTRILEV 282

Query: 242 QDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +D   +G+I F   K     L   L+ +G+   AI+G+I Q+ R + +   + G+I ++V
Sbjct: 283 EDY--DGVIAFVRTKMATEELADKLKSRGYRAAAINGDIPQQQRERTVEALRSGSIDVLV 340

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P+  E+Y+HRIGRTGRAGR G A   +   +   + AI
Sbjct: 341 ATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRAI 400

Query: 361 EKLIEKKVDWLN 372
           EK   + V+ ++
Sbjct: 401 EKATRQPVEQMH 412


>gi|254361250|ref|ZP_04977393.1| superfamily II helicase [Mannheimia haemolytica PHL213]
 gi|110735365|gb|ABG89253.1| ATP-dependent RNA helicase [Mannheimia haemolytica]
 gi|153092746|gb|EDN73789.1| superfamily II helicase [Mannheimia haemolytica PHL213]
          Length = 602

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 233/370 (62%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   ++ AV + G+V P+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 6   LTFADLGLPQPILDAVNEMGFVNPSPIQQECIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             ++  +   R P+ L++ PTRELA QVAD  E++ KN   + V  + GG  ++ Q + L
Sbjct: 66  AQIDPTQ---RHPQMLVMAPTRELAIQVADACEQFAKNMKGIRVVTVYGGQRYDIQLRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G+ V++ TPGRILDH  RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P T Q
Sbjct: 123 KQGSQVVVGTPGRILDHIRRGTLDLSELKFIVLDEADEMLRMGFIDDVETVMAELPETHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+++P+ +++     +A  IE  +      + K  ALL+ L 
Sbjct: 183 TALFSATMPEPIRRITRRFMKDPQEVKIKATERSAPDIEQSYWLVNG-FRKNDALLRFL- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++    E+ G+   A++G++ Q++R + L   + G + ++
Sbjct: 241 -EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLRSGRLDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P   E+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 300 VATDVAARGIDIERISLVINYDIPLEEESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359

Query: 360 IEKLIEKKVD 369
           IE LI+K ++
Sbjct: 360 IENLIKKPIN 369


>gi|261492525|ref|ZP_05989078.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496800|ref|ZP_05993174.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261307547|gb|EEY08876.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311684|gb|EEY12834.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 601

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 233/370 (62%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   ++ AV + G+V P+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 6   LTFADLGLPQPILDAVNEMGFVNPSPIQQECIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             ++  +   R P+ L++ PTRELA QVAD  E++ KN   + V  + GG  ++ Q + L
Sbjct: 66  AQIDPTQ---RHPQMLVMAPTRELAIQVADACEQFAKNMKGIRVVTVYGGQRYDIQLRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G+ V++ TPGRILDH  RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P T Q
Sbjct: 123 KQGSQVVVGTPGRILDHIRRGTLDLSELKFIVLDEADEMLRMGFIDDVETVMAELPETHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+++P+ +++     +A  IE  +      + K  ALL+ L 
Sbjct: 183 TALFSATMPEPIRRITRRFMKDPQEVKIKATERSAPDIEQSYWLVNG-FRKNDALLRFL- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++    E+ G+   A++G++ Q++R + L   + G + ++
Sbjct: 241 -EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLRSGRLDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P   E+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 300 VATDVAARGIDIERISLVINYDIPLEEESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359

Query: 360 IEKLIEKKVD 369
           IE LI+K ++
Sbjct: 360 IENLIKKPIN 369


>gi|149275912|ref|ZP_01882057.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
 gi|149233340|gb|EDM38714.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
          Length = 443

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 158/403 (39%), Positives = 244/403 (60%), Gaps = 10/403 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L+ +++ AV DAG+   TPIQ K I  VL   D+ GIA+TGTGKTA++VLP+L  
Sbjct: 5   FEEFNLNRQILNAVADAGFTVATPIQEKAIAPVLSGQDLFGIAETGTGKTAAYVLPILMQ 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q+ ++ + +    +L   ++ GGI  + Q ++++ G
Sbjct: 65  LK--YAQGDSARALILAPTRELAMQITEHIKVFSTYLDLRTVVIFGGIGPKTQIEQIKAG 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR LD +  G +    ++ LV+DEAD+M+DMGFI  I  I  +VP  RQ LL
Sbjct: 123 VDIIVATPGRFLDIYLAGHINTQYLKFLVLDEADKMMDMGFIGSIHRILEVVPRKRQNLL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM+  +QK++ +FL++P  +EV   ++ A+T+          +  K  LLQ L+++ 
Sbjct: 183 FSATMSSLVQKIAGDFLKHPTIVEVAEQATPAQTVTQTLYEV-PNFKTKINLLQHLMKND 241

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQ--GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  K  IIFC  K    N+   +E++    +V  IH N  Q +R+  +++FKEG I+++V
Sbjct: 242 EEFKRVIIFCKTKTVADNIFSFIERRFGADAVRVIHANKGQNTRINSINDFKEGNIRVLV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RG+D+ +V HV NFDVP   E+Y+HRIGRTGRA   G A T     +  +I  I
Sbjct: 302 ATDVASRGIDVSEVSHVINFDVPIIIEDYVHRIGRTGRALSKGDALTFFTDAEKYYIKKI 361

Query: 361 EKLIEKKVDW--LNGDLSSLNPPLEK---IDIAQHNHARKNNP 398
           EKLI +++    L  ++     P E+   I+ A  +  RK +P
Sbjct: 362 EKLIRQEIPVVPLPAEVFVEETPYEERQAINRAIDDQKRKEDP 404


>gi|311031130|ref|ZP_07709220.1| DEAD/DEAH box helicase domain protein [Bacillus sp. m3-13]
          Length = 507

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 152/381 (39%), Positives = 231/381 (60%), Gaps = 8/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ ++   G+ + TPIQ +TIP+ L   DV G AQTGTGKT +F LP+L  
Sbjct: 4   FKELGLSEDIMKSIDRMGFEEATPIQSETIPVALTGKDVIGQAQTGTGKTIAFGLPLLEN 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     ++    +++ PTRELA QVA+   K   +    V  + GG     Q + L++ 
Sbjct: 64  VDVTNESIQ---GIVIAPTRELAIQVAEEIYKASYHKRARVLSVFGGQDISRQIRSLKKN 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH NR  L + N+  +V+DEAD ML+MGFI  I+ I +  P  +QTLL
Sbjct: 121 PHIVVGTPGRLLDHINRKTLRLQNVNTVVLDEADEMLNMGFIEDIEKILAETPEKKQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   ++ ++E F+  P  ++V     T   I+  +V    +  KK   L +LL  Q
Sbjct: 181 FSATMPAPIRAIAERFMSEPVNVKVQAKELTISNIQQFYVEVPEK--KKFDTLTRLLDIQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  IIF   K+ V  L  +L  +G+S   IHG++ Q  RM +L  FKEG+I ++VA+
Sbjct: 239 -SPELAIIFGRTKRRVDELSDALNVRGYSAEGIHGDLSQAKRMSVLRKFKEGSIDVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V+  ++ ++  +E+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAITFVSPREVSYLHHVER 357

Query: 363 LIEKKVDWLNGDLSSLNPPLE 383
           + ++K+D L     +L+  LE
Sbjct: 358 VTKRKMDKLKA--PTLDEALE 376


>gi|196230330|ref|ZP_03129193.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
 gi|196225927|gb|EDY20434.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
          Length = 443

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 148/367 (40%), Positives = 216/367 (58%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL P+++ A+ DAGY +PTPIQ   IP +L   DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MPFAALGLEPRLLSALKDAGYTEPTPIQGAAIPKILSGSDVIGIAQTGTGKTAAFVLPML 60

Query: 61  TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L  +     R  R L+L PTRELAAQ+ +N   Y +     +A + GG+    Q + L
Sbjct: 61  QLLANRPPVSGRKIRALVLAPTRELAAQIEENARAYARYVPFRMATIFGGVGERPQIQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               +++I  PGR+LD   +       +E LV+DEADRMLDMGF+P I+ I   +P  RQ
Sbjct: 121 RDNVELIIACPGRLLDLMQQRHGDFTGLEFLVLDEADRMLDMGFLPDIRRIVKQLPRKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT++ E++ ++  FL NP  ++V   S+ AET+       Y         L   L
Sbjct: 181 TLLFSATLSGEIEALTHEFLHNPATVQVGRRSNPAETVTQV---AYEVPKHLKLALLAAL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++  M++ ++F   K     +   LE  G     +H N  Q  R++ L+ FK G ++++
Sbjct: 238 LNEPGMESVLVFSRTKHGADRIARKLESSGIKSATLHSNRTQNQRLRALAAFKAGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HV N+D P   E+Y+HRIGRTGRA   G A + V  ++   + +
Sbjct: 298 VATDIAARGIDVDGISHVINYDFPMTNEDYVHRIGRTGRANAVGDALSFVCPDEHGDLRS 357

Query: 360 IEKLIEK 366
           +E+ I +
Sbjct: 358 LERFIGR 364


>gi|306840535|ref|ZP_07473294.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO2]
 gi|306289550|gb|EFM60768.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO2]
          Length = 549

 Score =  283 bits (723), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 156/386 (40%), Positives = 231/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+ HD+ GIAQTG+GKTA+F LP+L  
Sbjct: 103 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGHDILGIAQTGSGKTAAFSLPILQK 162

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 163 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 222

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 223 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 282

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I    V       +K  LL  +L 
Sbjct: 283 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 340

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 341 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 399

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 400 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 458

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 459 AVERVTRSKLSIKDAPVKLAPAPVAK 484


>gi|94990733|ref|YP_598833.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270]
 gi|94544241|gb|ABF34289.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270]
          Length = 539

 Score =  283 bits (723), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 146/371 (39%), Positives = 228/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               K R    + + L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  N---KIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L+++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ +++     T   +E  +V    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVEQYYVRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 236 VNQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKQMKPL 365


>gi|296159198|ref|ZP_06842024.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295890457|gb|EFG70249.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 481

 Score =  283 bits (723), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 153/368 (41%), Positives = 223/368 (60%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  V D  Y  PTP+Q K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIDPLLRNVQDLNYQTPTPVQAKAIPAVLSGKDVMAAAQTGTGKTAGFALPLL 60

Query: 61  T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +++ G A      R L+L PTRELA QV  +F  YGK  +L      GG+    Q  K
Sbjct: 61  QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIDYGKGLDLRFLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPVQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT TD+++ ++   L++P  I V+ P++TA  I   +V T  + +K    +   
Sbjct: 181 QTLLFSATFTDDIRAMAAGILRDPLNISVSPPNATASKIRQ-WVVTVDKKNKPDLFMH-- 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +++  ++ ++F   +  V  L   L++ G++V  IHG+  Q +R++ L  FK G +Q+
Sbjct: 238 LVAENNWRHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V +D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVVTDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEK 366
           AIE LI +
Sbjct: 358 AIEALIRQ 365


>gi|237730082|ref|ZP_04560563.1| ATP-dependent RNA helicase DeaD [Citrobacter sp. 30_2]
 gi|226908688|gb|EEH94606.1| ATP-dependent RNA helicase DeaD [Citrobacter sp. 30_2]
          Length = 642

 Score =  283 bits (723), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 144/377 (38%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G+S  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQSLREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N DL
Sbjct: 362 RTMKLTIPEVELPNADL 378


>gi|325108112|ref|YP_004269180.1| DEAD/DEAH box helicase [Planctomyces brasiliensis DSM 5305]
 gi|324968380|gb|ADY59158.1| DEAD/DEAH box helicase domain protein [Planctomyces brasiliensis
           DSM 5305]
          Length = 475

 Score =  283 bits (723), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 152/370 (41%), Positives = 222/370 (60%), Gaps = 9/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L   +  A+    Y  PTPIQ +TIP +L   D+ G AQTGTGKTA+F LP+L  
Sbjct: 4   FSDLNLIAPIQRAIKAQNYTTPTPIQAQTIPEILNGRDILGSAQTGTGKTAAFALPILDY 63

Query: 63  LEKGRARVR----MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L  GR   R     P  L+L PTRELA QV D+F  YG++  +  AL+ GG+    Q + 
Sbjct: 64  L--GRQNRRPIPNEPTVLVLVPTRELAIQVGDSFATYGRHLRVRHALIYGGVNQFRQVRD 121

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG  +L+ TPGR+LD  N+G + ++ +E+  +DEADRM+DMGF+P ++ I   +P  R
Sbjct: 122 LNRGVHILVATPGRLLDLMNQGHIDLSRLELFAVDEADRMMDMGFLPDLKKIIREIPQER 181

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSAT+  ++ ++S   L +P  + ++    + E IE   +    Q SKK  LL  L
Sbjct: 182 QSLFFSATLPPKINELSRELLTDPVSVTIDPEVRSVEAIEQSLIYV-DQQSKKDLLLDIL 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +++ +   ++F   K     L   L K G S  AIHGN  Q +R K L  F+   +++
Sbjct: 241 --NEEGIGQTVVFTKTKFCANRLEEQLRKSGVSAIAIHGNKSQNARQKALLAFRNEKVKV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  V HV NF++P+  E+Y+HRIGRTGRAG  G A +  +  +   + 
Sbjct: 299 LVATDVAARGIDVDGVTHVINFELPHEPESYVHRIGRTGRAGASGIAISFCSNAERAELR 358

Query: 359 AIEKLIEKKV 368
           AIE+ IE+KV
Sbjct: 359 AIERQIEQKV 368


>gi|297569384|ref|YP_003690728.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925299|gb|ADH86109.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 612

 Score =  282 bits (722), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 149/369 (40%), Positives = 224/369 (60%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ L L+P +  AV + G+  PTPIQ ++IP +L   D+ G AQTGTGKTA+F LP+L
Sbjct: 11  LSFSQLPLAPAIHRAVDELGFETPTPIQAESIPPLLAGRDLLGQAQTGTGKTAAFSLPLL 70

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           + LE  +   + P+ L+L PTRELA QVA+  + + ++     V  L GG     Q ++L
Sbjct: 71  SQLEVDK---KYPQLLVLAPTRELALQVAEAMQSFARHLPGFQVLPLYGGQNMTLQLRRL 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA V++ TPGRI DH  RG L +  +  +V+DEAD ML MGFI  ++ I    P  RQ
Sbjct: 128 QRGAQVVVGTPGRIQDHLRRGTLRLERLSAVVVDEADEMLKMGFIDAVEQILEHAPKERQ 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   ++K++   L+NP  I++   +++   I   F A    +  K   L +LL
Sbjct: 188 VALFSATMPTAVRKIAHRHLKNPVEIKIKRTTTSMAAITQQFWAVKGLH--KLDALTRLL 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++  +  ++F   K   V L   LE +GF+  A++G++ Q+ R K +   K G + ++
Sbjct: 246 EAEE-FEAVLVFVRTKVATVELAEKLEARGFAAAALNGDMTQQMREKTIEQVKSGALDIV 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+DVP   E+YIHRIGRTGRAGR GKA   V   + + + A
Sbjct: 305 VATDVAARGLDVARITHVINYDVPYDTESYIHRIGRTGRAGRQGKAIIFVTPRERRLLAA 364

Query: 360 IEKLIEKKV 368
           IE+   +K+
Sbjct: 365 IEQASGQKI 373


>gi|329895875|ref|ZP_08271203.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC3088]
 gi|328922093|gb|EGG29452.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC3088]
          Length = 515

 Score =  282 bits (722), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 149/372 (40%), Positives = 231/372 (62%), Gaps = 9/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L   +  A+ D GY  P+ IQ KTIP +L+  DV G AQTGTGKTA+F LP+L  
Sbjct: 10  FASLNLPAYLQKALDDVGYEVPSDIQTKTIPPLLEGCDVIGQAQTGTGKTAAFALPILAK 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++    R +  + L+L PTRELA QVA+ F+ Y ++     VA + GG  +  Q K+LER
Sbjct: 70  ID---CRKKQTQCLVLAPTRELAIQVAEAFQSYARHLPGFQVAPIYGGTDYRTQLKQLER 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  +G L ++N+  LV+DEAD ML MGFI  ++ + S +P  RQ  
Sbjct: 127 GAQVIVGTPGRVMDHMRKGSLKLDNLAHLVLDEADEMLRMGFIDDVEWVMSQLPEKRQIA 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQ 240
           LFSATM   +++++ ++LQ+P+ I V   + TA +I +  ++ + A    K   L ++L+
Sbjct: 187 LFSATMPTAIRRIASDYLQDPQHITVTQKTVTATSIRQRVWMISGA---SKLDGLTRILE 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIF   K     L   L+ +GF+  A++G++ Q +R +++S  K+G + ++V
Sbjct: 244 VED-FDGLIIFARTKIATTELADKLQARGFAAAALNGDMAQSAREQVISQLKKGRLDIVV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P   E Y+HRIGRTGRAGR G+A    A  + + +  I
Sbjct: 303 ATDVAARGLDVDRITHVVNYDIPQDPEAYVHRIGRTGRAGRKGEAILFAANREQRLLRMI 362

Query: 361 EKLIEKKVDWLN 372
           E+   + ++ + 
Sbjct: 363 ERTTGQPIELMR 374


>gi|168185435|ref|ZP_02620070.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
           Eklund]
 gi|169296498|gb|EDS78631.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
           Eklund]
          Length = 476

 Score =  282 bits (722), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 229/364 (62%), Gaps = 6/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F D  LS +++  +   GY  PT +Q KTIP+VLQ  D+   +QTG+GKTASF +P+ 
Sbjct: 1   MNFNDFKLSSEILKTIKMLGYKNPTEVQEKTIPIVLQGKDIIVKSQTGSGKTASFGIPLC 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK +   + P+ LIL PTRELA Q+ ++    G+   +    + G  P   Q  +L+
Sbjct: 61  ---EKVKLENKKPQALILTPTRELAVQIKEDISNIGRFKKVKCVAVYGKEPVSIQKNQLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR  DH  +G L +++++ L+IDEAD+ML+MGFI  +++I   +   R T
Sbjct: 118 QRVHIVVGTPGRTFDHIQKGNLDLSDVKYLIIDEADKMLNMGFIDQVEDIIKRLSTDRIT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ + ++K+ + ++ NP++IE+   + T + IE  +      +SK+   L +++ 
Sbjct: 178 MLFSATLEERIEKLCKRYMNNPEKIEIKRENVTTDVIEQEYYK--VDHSKRFNTLTKVIY 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + IIFCN K  V N+ + ++ +GF+  A+HG +DQ+ R+  +++FK G  Q +V
Sbjct: 236 AE-VPDSAIIFCNTKVEVGNVANKMKNEGFNAKALHGGMDQKDRLYTINDFKRGKFQFLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HV N++VP   E Y+HRIGRTGRAG  GK+ T V+  + +  + I
Sbjct: 295 ATDVAARGIDVEEITHVINYEVPVEKEGYVHRIGRTGRAGHKGKSITFVSDYEKRMFNEI 354

Query: 361 EKLI 364
           E+ I
Sbjct: 355 EEYI 358


>gi|253681284|ref|ZP_04862082.1| cold-shock deAd box protein a [Clostridium botulinum D str. 1873]
 gi|253562522|gb|EES91973.1| cold-shock deAd box protein a [Clostridium botulinum D str. 1873]
          Length = 528

 Score =  282 bits (722), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 150/367 (40%), Positives = 227/367 (61%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +S ++  A+ D G+  P+PIQ K IP +L   D+ G AQTGTGKTA+F +P L  
Sbjct: 6   FEDLPISDEIKRAIADMGFEAPSPIQEKAIPFILSGKDIIGQAQTGTGKTAAFGIPALDT 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++     +++   ++L PTRELA Q      K GK    + V  + GG P + Q K L+R
Sbjct: 66  IDLDNKSLQI---MVLCPTRELAIQATQEVHKLGKYKKGINVLAVYGGQPIDRQIKALKR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR++DH  R  L  +NI+++V+DEAD MLDMGF   I+ I   +P  RQT+
Sbjct: 123 GVQIIIGTPGRVIDHIRRKTLKTDNIKMIVLDEADEMLDMGFRDDIETIIQAIPQNRQTI 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   + ++S+ +  N + I+V     T   IE  ++    + + K  +L +L+  
Sbjct: 183 LFSATMAKAIIELSKKYQNNAEFIKVVHKQLTVPNIEQRYLEV--KENNKLEVLSRLIDM 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++  K  +IFCN KK V  +   L+ +G+    +HG++ Q  R ++++ F+ GTI+++VA
Sbjct: 241 RNP-KLSVIFCNTKKRVDEVVSQLQARGYFAEGLHGDMKQPQRDRVMNKFRNGTIEILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G AFT VA + I+ +  IE
Sbjct: 300 TDVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRSGIAFTFVAGKAIRKLRDIE 359

Query: 362 KLIEKKV 368
           +  + KV
Sbjct: 360 RYTKTKV 366


>gi|258405603|ref|YP_003198345.1| DEAD/DEAH box helicase domain-containing protein [Desulfohalobium
           retbaense DSM 5692]
 gi|257797830|gb|ACV68767.1| DEAD/DEAH box helicase domain protein [Desulfohalobium retbaense
           DSM 5692]
          Length = 403

 Score =  282 bits (722), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 149/383 (38%), Positives = 221/383 (57%), Gaps = 9/383 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    L  K+   +   G+ +PTPIQ + +PL L+  DV G+AQTGTGKTA+FVLP+L
Sbjct: 1   MHFDAFSLHEKITTGIAACGFTQPTPIQAQALPLALEGKDVLGLAQTGTGKTAAFVLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G R RVR    LI+ PTRELA Q      + G++  L  A + GG+  + Q  K+
Sbjct: 61  QRLMSGPRRRVR---ALIVSPTRELAEQTVQVCNQLGRHTGLKAAAVYGGVGKKPQVDKI 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA++++  PGR+LDH       +  +E+LV+DEADRM DMGF+P I  I S +P  RQ
Sbjct: 118 RSGAEIIVACPGRLLDHLTDRSFNLKQVEMLVLDEADRMFDMGFLPDIHRILSYLPAQRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM  +++ ++E  L +P  + ++    +A  I        AQ+ K   LL+ L 
Sbjct: 178 NMLFSATMPADIRALTEKLLVDPAEVRIDHEKPSA-NISQALYPVEAQH-KTPMLLKILE 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D +   ++F   K     L   L+  G+    +HGN+ Q  R   ++ F+ G   ++
Sbjct: 236 DEPDALT--LVFTKTKHGARKLAQKLKASGYKAADLHGNLSQAQRRTAMAGFRSGRFTIL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  +  V NFD+P+ AENY HRIGRTGR  R G A +L+A+ D+  + A
Sbjct: 294 VATDIAARGIDVERIARVINFDMPDTAENYTHRIGRTGRIDRSGLAMSLIARGDMHLVRA 353

Query: 360 IEKLIEKKVDWLNGD-LSSLNPP 381
           IE+ + K+++    D +  L PP
Sbjct: 354 IERNLGKRLERKTIDQMEHLAPP 376


>gi|146308743|ref|YP_001189208.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145576944|gb|ABP86476.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 447

 Score =  282 bits (722), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 149/368 (40%), Positives = 225/368 (61%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  + +  Y  PTP+Q + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRTLTELDYQTPTPVQSQAIPAMLKGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               LE  +      R L+L PTRELA QV  +F+ YG++  L+   + GG+    Q  K
Sbjct: 61  QRLTLEGPQVASNAVRALVLVPTRELAEQVLQSFQAYGQHLPLSSYAVYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD + +  +    ++ LV+DEADRMLD+GF   +  + S +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLYRQNAVKFAQLQTLVLDEADRMLDLGFARELDELFSALPKRR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D +++++   L++P  +EV+  ++ A++++   +       +K  L   L
Sbjct: 181 QTLLFSATFSDVIRQMAGELLRDPVSVEVSPRNAAAKSVKQWLIPV--DKKRKSELFLHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ +      ++F   +K V  L   L   G S  +IHG+  Q SR++ L  FK G +Q+
Sbjct: 239 LQ-EKRWGQVLVFAKTRKGVDQLEQELLAMGVSADSIHGDKPQPSRLRALERFKAGEVQI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPLVVNLDLPINAEDYVHRIGRTGRAGSTGEAVSLVCADEVELLA 357

Query: 359 AIEKLIEK 366
           AIE+LI +
Sbjct: 358 AIERLIRQ 365


>gi|145299438|ref|YP_001142279.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852210|gb|ABO90531.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 613

 Score =  282 bits (722), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 146/368 (39%), Positives = 227/368 (61%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL+  V+ A+ D GY +P+PIQ   IP ++  HD+ G AQTGTGKTA+F LP+L+ 
Sbjct: 10  FSELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTAAFALPLLSR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           LE G    R  + L+L PTRELA QVA+  ++Y K+  +  V  + GG  +E Q + L R
Sbjct: 70  LEAGN---RNTQVLVLAPTRELALQVAEACQRYAKHMPDFHVLPIYGGSSYETQTRALRR 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++D   R  L ++ ++ LV+DEAD ML MGFI  +  I    P TRQ  
Sbjct: 127 GAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCPSTRQVA 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D++++V++  L+ PK I++ + +STA TI   +      +  K   + +LL+ 
Sbjct: 187 LFSATMPDQIRRVAQKHLKQPKEIKIVSKTSTAPTIRQRYWQVTGLH--KLDAMTRLLEV 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  ++F   K     L   L  +G +  A+HG+I Q+ R + +   ++G + +++A
Sbjct: 245 E-PYEAVLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   VA  + + + AIE
Sbjct: 304 TDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIE 363

Query: 362 KLIEKKVD 369
               + ++
Sbjct: 364 HATRQAIE 371


>gi|159030016|emb|CAO90397.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 479

 Score =  282 bits (722), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 147/367 (40%), Positives = 227/367 (61%), Gaps = 5/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS   +  +   G+  PT IQ K IPL+L+ HD+ G++QTGTGKTA++ LP+L  
Sbjct: 5   FNNLGLSDSRLQHLETLGFTTPTEIQTKAIPLLLEGHDMVGMSQTGTGKTAAYSLPLLER 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     V+    LIL PTRELA QVA   + +  +  L +  + GG   E Q + LE+G
Sbjct: 65  MDTKNPNVQ---ALILTPTRELAQQVASAIKDFSDDRRLFILTVCGGQSMERQIRSLEKG 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++D  +R KL + ++  +V+DEAD ML MGFI  ++ I    P TRQT  
Sbjct: 122 VQIVVGTPGRVIDLLDRKKLHLESLNWVVLDEADEMLSMGFIDDVKKILQASPSTRQTAC 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++ +  NFL++P  + V+ P +    IE         ++ K  +LQ LL+  
Sbjct: 182 FSATMPREIRDLIANFLKSPISVTVSQPQAAPAKIEQKIYMIPRGWT-KLKVLQPLLEI- 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           + +++ IIF   K+    L   L++ G +V   HGN+ Q  R +++  F+EG I+L+VA+
Sbjct: 240 EPLESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+ ++ HV N+D+P+ AE YIHRIGRTGRAG+ G A +LV   D + +  IE+
Sbjct: 300 DIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQIEQ 359

Query: 363 LIEKKVD 369
            + ++++
Sbjct: 360 RLRQRLE 366


>gi|319899115|ref|YP_004159208.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
 gi|319403079|emb|CBI76634.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
          Length = 416

 Score =  282 bits (722), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 156/369 (42%), Positives = 230/369 (62%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA+LGLS  ++  + +AG  KP  IQ + IP++L+ HDV GIAQTG+GKT +F LP+L  
Sbjct: 9   FAELGLSSLLIKNLFNAGMSKPKLIQAQAIPVMLKGHDVLGIAQTGSGKTLAFSLPILNR 68

Query: 62  ILEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL  G  R  +  R LIL PTRELA Q+ +      K  +L+  L++GG+    Q K++ 
Sbjct: 69  ILTLGDKRHPKTARALILVPTRELAVQIEEAISAVAKGTHLSTCLILGGMSRLIQIKRMA 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+LI TPGR++D      + ++     V+DEADRMLDMGFI  ++ I + +    QT
Sbjct: 129 KGVDILIATPGRLMDLIRSKYIDLSQSRFFVLDEADRMLDMGFISDVRQIANFLHKKCQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  +++N L+ P +IEV    +TA  +E   V      S+K ++L +LL 
Sbjct: 189 ALFSATMPKEVNVLADNLLKKPIKIEVVPQGTTA--VEITQVLYCVSTSEKKSVLSKLL- 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   + + I+F   K    ++  SL+K G+SV  IHGN  Q +R   L +F+EG ++++V
Sbjct: 246 TNPALASVIVFIRTKHGADSVARSLKKTGYSVATIHGNKSQNARQCALKDFREGLVRILV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           A+D+ ARG+DIP + HV N+D+P+ AE+Y+HRIGRTGR G  G A TL   K +   + A
Sbjct: 306 ATDIVARGIDIPGISHVINYDLPDNAESYVHRIGRTGRNGASGDAITLFDEKVERARLSA 365

Query: 360 IEKLIEKKV 368
           IE+LI  K+
Sbjct: 366 IERLIRIKL 374


>gi|305682037|ref|ZP_07404841.1| ATP-dependent RNA helicase DeaD [Corynebacterium matruchotii ATCC
           14266]
 gi|305658510|gb|EFM48013.1| ATP-dependent RNA helicase DeaD [Corynebacterium matruchotii ATCC
           14266]
          Length = 721

 Score =  282 bits (722), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 150/398 (37%), Positives = 241/398 (60%), Gaps = 25/398 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   VV AV + G+  P+PIQ +TIP++L  HDV G+AQTGTGKTA+F LP+L++
Sbjct: 74  FDTLGLPKPVVKAVENVGFETPSPIQAQTIPVLLDGHDVLGLAQTGTGKTAAFALPILSL 133

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKLE 120
           ++   A +R P+ LIL PTRELA QVAD+F+ +  + +  +++L   GG  +  Q   L 
Sbjct: 134 ID---ADIRHPQALILAPTRELALQVADSFQVFVDHLDGDISVLPIYGGQAYGIQLSGLR 190

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +++ TPGR++DH  +G L ++ +  LV+DEAD ML+MGF   ++ I +  P  +Q 
Sbjct: 191 RGAQIVVGTPGRVIDHLEKGSLDISELRFLVLDEADEMLNMGFQEDVERILADTPEDKQV 250

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++++S+ ++ +P  I+V + + T   I   F+     +  K   L ++L+
Sbjct: 251 ALFSATMPSGIRRLSKQYMNDPHEIQVKSETRTNTNITQRFL--NVAHRNKLDALTRILE 308

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K     L   L  +GF+  AI+G+I Q+ R + +   K+G + ++V
Sbjct: 309 VTE-FEAMIMFVRTKFETEELAEKLRARGFNAAAINGDIAQQQRERTVEQLKDGRLDILV 367

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 368 ATDVAARGLDVERISHVLNYDIPSDTESYVHRIGRTGRAGRSGEAILFVTPRERRFLRNI 427

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKID---IAQHNHARK 395
           E+              + N PL++++   + + N +RK
Sbjct: 428 ER--------------ATNAPLQEMELPTVDEVNESRK 451


>gi|261342608|ref|ZP_05970466.1| cold-shock DEAD box protein A [Enterobacter cancerogenus ATCC
           35316]
 gi|288315255|gb|EFC54193.1| cold-shock DEAD box protein A [Enterobacter cancerogenus ATCC
           35316]
          Length = 629

 Score =  282 bits (722), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 139/364 (38%), Positives = 228/364 (62%), Gaps = 7/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLHN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     +R P+ L+L PTRELA QVA+   ++ K+   + V  L GG  ++ Q + L +
Sbjct: 68  IDPD---LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   + + Y    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  IE
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 362 KLIE 365
           + ++
Sbjct: 362 RTMK 365


>gi|166365637|ref|YP_001657910.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843]
 gi|166088010|dbj|BAG02718.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843]
          Length = 479

 Score =  282 bits (722), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 147/367 (40%), Positives = 227/367 (61%), Gaps = 5/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS   +  +   G+  PT IQ K IPL+L+ HD+ G++QTGTGKTA++ LP+L  
Sbjct: 5   FNNLGLSDSRLQHLETLGFTTPTEIQTKAIPLLLEGHDMVGMSQTGTGKTAAYSLPLLER 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     V+    LIL PTRELA QVA   + +  +  L +  + GG   E Q + LE+G
Sbjct: 65  MDTKNPNVQ---ALILTPTRELAQQVASAIKDFSDDRRLFILTVCGGQSMERQIRSLEKG 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++D  +R KL + ++  +V+DEAD ML MGFI  ++ I    P TRQT  
Sbjct: 122 VQIVVGTPGRVIDLLDRKKLHLESLNWVVLDEADEMLSMGFIDDVKKILQASPSTRQTAC 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++ +  NFL++P  + V+ P +    IE         ++ K  +LQ LL+  
Sbjct: 182 FSATMPREIRDLIANFLKSPISVTVSQPQAAPAKIEQKIYLIPRGWT-KLKVLQPLLEI- 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           + +++ IIF   K+    L   L++ G +V   HGN+ Q  R +++  F+EG I+L+VA+
Sbjct: 240 EPLESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+ ++ HV N+D+P+ AE YIHRIGRTGRAG+ G A +LV   D + +  IE+
Sbjct: 300 DIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQIEQ 359

Query: 363 LIEKKVD 369
            + ++++
Sbjct: 360 RLRQRLE 366


>gi|149196871|ref|ZP_01873924.1| Probable ATP dependent RNA helicase [Lentisphaera araneosa
           HTCC2155]
 gi|149139981|gb|EDM28381.1| Probable ATP dependent RNA helicase [Lentisphaera araneosa
           HTCC2155]
          Length = 537

 Score =  282 bits (722), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 144/361 (39%), Positives = 223/361 (61%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F  LGL P +   +   G+ +P+PIQ + IP++L Q HD+ G AQTGTGKTA+F LP++ 
Sbjct: 4   FTALGLEPWITQCLEAKGFKEPSPIQEQAIPVLLSQDHDIIGQAQTGTGKTAAFGLPIVQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +E G   ++ P+ LIL PTRELA QV +  + + K   +T   L GG P   Q + L++
Sbjct: 64  KIEPG---LKKPQALILCPTRELAIQVNEEIKSFCKGRGITTVTLYGGAPIMDQKRALKK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR +     GKL ++++E LV+DEAD ML+MGF+  ++ +    P  R  L
Sbjct: 121 GVDLVVATPGRCIHFIEDGKLELDSLEYLVLDEADEMLNMGFVEDVEKVLKASPDDRTVL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM   L+K++E+++ N   I+  + + T ETI+      Y + +K  AL + +   
Sbjct: 181 MFSATMPPRLKKIAESYMHNSITIKAKSETMTMETIDQVVYEAYPE-NKFAALCRIMDLE 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D    GIIFC  K  V  +   L  +G++   IHG++ Q SR ++L  F+   I L++A
Sbjct: 240 KDFY--GIIFCRTKVEVEKVSAGLANEGYAADYIHGDVAQESRERLLKRFRNRNISLLIA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ D+ H+ NF +P + E+Y+HRIGRTGRAG+ G A TL+  ++   +  IE
Sbjct: 298 TDVAARGIDVTDLSHIVNFSLPEQFESYVHRIGRTGRAGKTGTAITLITPKERSKMSFIE 357

Query: 362 K 362
           K
Sbjct: 358 K 358


>gi|290511539|ref|ZP_06550908.1| ATP-dependent RNA helicase DeaD [Klebsiella sp. 1_1_55]
 gi|289776532|gb|EFD84531.1| ATP-dependent RNA helicase DeaD [Klebsiella sp. 1_1_55]
          Length = 659

 Score =  282 bits (722), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 143/377 (37%), Positives = 233/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 24  FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNN 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     +R P+ L+L PTRELA QVA+   ++ K+   + V  L GG  ++ Q + L +
Sbjct: 84  ID---PELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQ 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 141 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   Y    +K   L + L++
Sbjct: 201 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGM--RKNEALVRFLEA 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 259 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 318 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 377

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 378 RTMKLTIPEVELPNAEL 394


>gi|26991447|ref|NP_746872.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440]
 gi|24986522|gb|AAN70336.1|AE016675_6 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
           KT2440]
          Length = 443

 Score =  282 bits (722), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 152/368 (41%), Positives = 222/368 (60%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+FA LGL   ++  +    Y  PTP+Q K IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               LE  +      R L+L PTRELA QV +N  +Y +N  LT   + GG+    Q  +
Sbjct: 61  QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLTTYAVYGGVSINPQMMR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+LD F +  +  N ++ LV+DEADRMLD+GF   +Q++ + +P  R
Sbjct: 121 LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D+++ ++   L +P  IEV+  ++TA +++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPV--DKKRKADLFCHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ Q   K  ++F   +  V  L   L  +G +   IHG+  Q +R + L +FK   +Q+
Sbjct: 239 LRKQ-RWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLA 357

Query: 359 AIEKLIEK 366
           AIE L  +
Sbjct: 358 AIEVLTRQ 365


>gi|153800715|ref|ZP_01955301.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
 gi|227812335|ref|YP_002812345.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
 gi|229522328|ref|ZP_04411744.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|298499563|ref|ZP_07009369.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757]
 gi|124123690|gb|EAY42433.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
 gi|227011477|gb|ACP07688.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
 gi|229340313|gb|EEO05319.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|297541544|gb|EFH77595.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757]
          Length = 422

 Score =  282 bits (722), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 149/379 (39%), Positives = 231/379 (60%), Gaps = 9/379 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGL  +++  + + G V PTPIQ + IP VLQ  DV   AQTGTGKTA+F LP++
Sbjct: 6   ITFSQLGLDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65

Query: 61  T-ILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
              +E+   R    +  R L+L PTRELA QV D+ + Y K   L +  + GG   + Q 
Sbjct: 66  QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G D+LI TPGR+LDH +   L +  +E+LV+DEADRMLDMGF+P +Q +   +  
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSAT   +++ V+   +++P  ++V   +STAET++           +K  LL 
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPV--DKKRKRELLS 243

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L+ S++  +  ++F   ++    L   L+  G    +I+G+  Q +R K L +FK G +
Sbjct: 244 YLIGSKN-WQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L++ ++   
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAISLLSHDEQPQ 362

Query: 357 IDAIEKLIEKKV--DWLNG 373
           ++AIE+L+  ++  +WL G
Sbjct: 363 LEAIERLLNTRLPQEWLKG 381


>gi|157377161|ref|YP_001475761.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157319535|gb|ABV38633.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 610

 Score =  282 bits (722), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 230/371 (61%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL+  ++ A+ + GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L  
Sbjct: 8   FRELGLAEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLNS 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++        P+ L+L PTRELA QVA+ F  Y K    L V  + GG     Q   L R
Sbjct: 68  IDPN---TNAPQILVLAPTRELAVQVAEAFGSYAKFMKGLHVLPIYGGQSMHQQLNALRR 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH  RG L + +++ +V+DEAD ML MGFI  I+ I    P  RQ  
Sbjct: 125 GPQIIVGTPGRVMDHMRRGTLKLESLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQLA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +++++V+  +L  P  +++   ++T ETIE  FV   +Q++K  AL++ +L+ 
Sbjct: 185 LFSATMPEQIKRVANKYLSEPVHVKIAATTTTVETIEQRFVQV-SQHNKLEALVR-VLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T +  IIF   + + V L   LE +G++   +HG+++Q++R + +   K GT+ +++A
Sbjct: 243 EKT-EGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGTLDIIIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +GHV N+D+P   E Y+HRIGRTGRAGR G A   V   +++ +  IE
Sbjct: 302 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIE 361

Query: 362 KLIEKKVDWLN 372
           +  + ++  ++
Sbjct: 362 RATKSRISPMD 372


>gi|115361005|ref|YP_778142.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115286333|gb|ABI91808.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
          Length = 511

 Score =  282 bits (721), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 153/366 (41%), Positives = 224/366 (61%), Gaps = 5/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  + D  Y  PTP+Q+K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 35  MSFASLGLIDPLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALPLL 94

Query: 61  T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             ++++G A      R L+L PTRELA QV  +F  YGK  +L      GG+    Q  K
Sbjct: 95  QRLVQQGPAVSSNRARVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMK 154

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + +E LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 155 LRKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPVQR 214

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT TD+++ ++ + L++P  I V+ P+ T   I+  +V T  + +K    +   
Sbjct: 215 QTLLFSATFTDDIRTMAASILRSPVNISVSPPNVTGSKIKQ-WVVTVDKRNKPDLFMH-- 271

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +++   + ++F   +  V  L   L++ G++V  IHG+  Q +R++ L  FK G +Q+
Sbjct: 272 LVAENNWDHALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQM 331

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 332 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 391

Query: 359 AIEKLI 364
           AIE LI
Sbjct: 392 AIEALI 397


>gi|311748030|ref|ZP_07721815.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1]
 gi|126575012|gb|EAZ79370.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1]
          Length = 379

 Score =  282 bits (721), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 156/381 (40%), Positives = 236/381 (61%), Gaps = 15/381 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+DLGL+ +++ A+  A Y KP PIQI+ IP  L R D+ GIA TG+GKTAS++LP+L
Sbjct: 3   MNFSDLGLNKQLLTAIEKAKYTKPYPIQIEAIPAFLNRKDILGIAPTGSGKTASYILPIL 62

Query: 61  TILE-KGRARVRMPRTLILEPTRELAAQVA---DNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +L+ K   R R    L+L PTRELAAQVA   DNF ++ +    T+A+  GG+    Q 
Sbjct: 63  QLLQGKKEHRSRNIPVLVLVPTRELAAQVAQVADNFSRFLERRIKTLAVF-GGVSINPQM 121

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            KL  G D+L+ TPGR+LD  ++  L ++++EILV+DE D++L+MGF   +  I + +P 
Sbjct: 122 MKLN-GTDILVATPGRLLDLLSKNALSISDVEILVLDEMDKVLNMGFREEVDQILADIPK 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA---QYSKKCA 233
            RQT+LFSAT  + L++V  + L++PKRI V      A  ++   +  YA      KK  
Sbjct: 181 NRQTILFSATQDETLEEVISSLLKDPKRISVK-----AAEVDMNLINQYAYRISAEKKGP 235

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL+ ++ S D     ++F +  +   NL   L K G    A HG+  Q +R + L+ FK 
Sbjct: 236 LLRHIINSGD-WSQILVFTSSIRTANNLVQKLVKNGIDALAFHGDKSQGARTEALARFKS 294

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G  +++VA+DLA RG+DI  +  V NF++P   ++Y+HR+GRTGRAG  G+A +L+ +ED
Sbjct: 295 GKTRVLVATDLAGRGIDIQFLPLVINFELPRSPKDYVHRVGRTGRAGATGEAISLITEED 354

Query: 354 IKHIDAIEKLIEKKVDWLNGD 374
           + H   I+K ++K V   + D
Sbjct: 355 LHHFKIIQKKMKKHVQLRSTD 375


>gi|262190914|ref|ZP_06049130.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
 gi|297580199|ref|ZP_06942126.1| ATP-dependent RNA helicase [Vibrio cholerae RC385]
 gi|262033210|gb|EEY51732.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
 gi|297535845|gb|EFH74679.1| ATP-dependent RNA helicase [Vibrio cholerae RC385]
          Length = 422

 Score =  282 bits (721), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 149/379 (39%), Positives = 231/379 (60%), Gaps = 9/379 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGL  +++  + + G V PTPIQ + IP VLQ  DV   AQTGTGKTA+F LP++
Sbjct: 6   ITFSQLGLDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65

Query: 61  T-ILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
              +E+   R    +  R L+L PTRELA QV D+ + Y K   L +  + GG   + Q 
Sbjct: 66  QRFIEQPWQRETNSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G D+LI TPGR+LDH +   L +  +E+LV+DEADRMLDMGF+P +Q +   +  
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSAT   +++ V+   +++P  ++V   +STAET++           +K  LL 
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPV--DKKRKRELLS 243

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L+ S++  +  ++F   ++    L   L+  G    +I+G+  Q +R K L +FK G +
Sbjct: 244 YLIGSKN-WQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L++ ++   
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAISLLSHDEQPQ 362

Query: 357 IDAIEKLIEKKV--DWLNG 373
           ++AIE+L+  ++  +WL G
Sbjct: 363 LEAIERLLNTRLPQEWLKG 381


>gi|52424550|ref|YP_087687.1| SrmB protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306602|gb|AAU37102.1| SrmB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 613

 Score =  282 bits (721), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 152/406 (37%), Positives = 242/406 (59%), Gaps = 25/406 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV D G+  P+PIQ   IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FGDLGLPEFILSAVSDMGFETPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLAQ 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++      + P+ L++ PTRELA QVA+  E + KN   + +A L GG  ++ Q + L +
Sbjct: 68  ID---IEEKHPQMLVMAPTRELAIQVAEACELFTKNAKGVHIATLYGGQRYDIQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRILDH  RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P   QT 
Sbjct: 125 GAQVVVGTPGRILDHIRRGTLNLSELKFIVLDEADEMLRMGFIDDVETVMAELPAQHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQ 240
           LFSATM + ++++++ F+ +P+ +++ +   T   I + C+   Y +  +K   L + L+
Sbjct: 185 LFSATMPEPIRRITKRFMTDPQEVKIQSTQRTNPDIAQSCW---YVRGYRKNEALLRFLE 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++V
Sbjct: 242 VED-FDGAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRSGSAILFVEPRERRLLSNI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN--HARKNNPIPQKST 404
           E+L++K              P+E++D+  H    AR+      K T
Sbjct: 361 ERLMKK--------------PIEEVDVPNHEALQARRREKFKAKIT 392


>gi|170690407|ref|ZP_02881574.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170144842|gb|EDT13003.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 481

 Score =  282 bits (721), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 155/368 (42%), Positives = 219/368 (59%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  + D  Y  PTP+Q K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIDPLLRNMRDLNYQTPTPVQAKAIPAVLSGKDVMAAAQTGTGKTAGFALPLL 60

Query: 61  TIL-EKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L ++G A      R L+L PTRELA QV  +F  YGK  +L      GG+    Q  K
Sbjct: 61  QRLGQQGPAVSSNRARVLVLVPTRELAEQVLQSFIDYGKGLDLRFLAAYGGVSVNPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT TD+++ ++   L+ P  I V+ P++TA  I    V        K  L   L
Sbjct: 181 QTLLFSATFTDDIRALAAGILRGPVDISVSPPNATASKIRQWVVPV--DKRNKPDLFMHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +Q+  ++ ++F   +  V  L   L++ G++V  IHG+  Q +RM+ L  FK G + +
Sbjct: 239 V-AQNNWEHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARMRALERFKTGEVNM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEK 366
           AIE LI +
Sbjct: 358 AIEALIRQ 365


>gi|158320253|ref|YP_001512760.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           oremlandii OhILAs]
 gi|158140452|gb|ABW18764.1| DEAD/DEAH box helicase domain protein [Alkaliphilus oremlandii
           OhILAs]
          Length = 529

 Score =  282 bits (721), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 157/371 (42%), Positives = 234/371 (63%), Gaps = 11/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL +   ++  +L+ GY  PTPIQ + IP +    D+ G AQTGTGKTA+F +PML
Sbjct: 5   IQFQDLNIKKDILKGILELGYEVPTPIQAQAIPRLYAGEDIIGQAQTGTGKTAAFGIPML 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKL 119
              EK   + + P+ LIL PTREL+ QVAD   K+ K  +   ++ I GG P + Q K L
Sbjct: 65  ---EKINPQQKTPQVLILAPTRELSMQVADEIRKFSKYLSGAKSIAIYGGQPIDRQIKAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G ++++ TPGRILDH  R  L ++ I  LV+DEAD+MLDMGF   I+ I    P  RQ
Sbjct: 122 KQGVNIVVGTPGRILDHIRRKTLRLDQIVGLVLDEADQMLDMGFSDDIEAILQETPSERQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQ 237
           T++FSATM  E++++++ +++NPK+++V     T   I   +  V  + +    C +L  
Sbjct: 182 TVMFSATMPKEIEEIAKKYMKNPKKVKVVHKELTVPKISQYYFEVRPHEKLDALCRIL-- 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                +  + GIIFC  KK V  L  +L+ +G+SV  IHG++ Q  R +++  F++GT+ 
Sbjct: 240 ---DMENSELGIIFCRTKKGVDELVENLQSRGYSVEGIHGDLKQSQRDRVMKKFRDGTLD 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           LM+A+D+AARG+D+ DV  V N+DVP   E Y+HRIGRTGRAGR G A+TLV  + I+ +
Sbjct: 297 LMIATDVAARGIDVDDVDLVVNYDVPEDFEYYVHRIGRTGRAGREGLAYTLVTGKQIRTL 356

Query: 358 DAIEKLIEKKV 368
            A+E  I+ K+
Sbjct: 357 KALEAYIKGKI 367


>gi|311743209|ref|ZP_07717016.1| DeaD protein [Aeromicrobium marinum DSM 15272]
 gi|311313277|gb|EFQ83187.1| DeaD protein [Aeromicrobium marinum DSM 15272]
          Length = 567

 Score =  282 bits (721), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 152/374 (40%), Positives = 228/374 (60%), Gaps = 13/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   +V  +   GY  PTPIQ + I  +L   DV G+AQTGTGKTA+F LP+L  
Sbjct: 8   FADLGLGDALVAVLAGLGYETPTPIQAQAIGPLLDGRDVVGLAQTGTGKTAAFALPILER 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121
           L+  RA  +    LIL PTRELA QV+D F  Y  +   L +  + GG  + AQ + L+R
Sbjct: 68  LDPDRAETQ---ALILAPTRELALQVSDAFATYAARTPGLRILPVYGGQGYAAQLRGLQR 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGF   ++ I +  P  +Q  
Sbjct: 125 GAHVVVGTPGRVIDHLDRGSLELSGLDHLVLDEADEMLTMGFAEDVERILADTPEDKQVA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L +P  ++V TP++T  T           +  K   L +LL+ 
Sbjct: 185 LFSATMPPAIRRLAKKYLNDP--VDVATPAATRSTTTVRQRWISVPHHGKFDALTRLLE- 241

Query: 242 QDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++NG   IIF   K+    L   L  +GF   A++G++ Q  R +I+   K G++ +
Sbjct: 242 ---VENGDGMIIFVRTKQATEELAEKLRSRGFDAAALNGDLVQAQRERIVGQLKGGSLDI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  + HV N D+P+ AE+Y+HRIGRTGRAGR G+A   V   + + + 
Sbjct: 299 LVATDVAARGLDVDRITHVINHDIPHDAESYVHRIGRTGRAGRSGEAVLFVTPRERRMLS 358

Query: 359 AIEKLIEKKVDWLN 372
           AIEK+  + V+ ++
Sbjct: 359 AIEKVSGRPVEEMS 372


>gi|117619321|ref|YP_856922.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117560728|gb|ABK37676.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 461

 Score =  282 bits (721), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 163/384 (42%), Positives = 240/384 (62%), Gaps = 8/384 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLSP ++ AV + GY +PTPIQ + IP +L   DV G AQTGTGKTA F LPML
Sbjct: 1   MSFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPML 60

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L    GR R R  R L+L PTRELAAQV ++  KY  +      +  GG+  +     
Sbjct: 61  QRLLANHGRGR-RQVRALVLTPTRELAAQVGESIIKYAHHLPFRTLIAYGGVSIKPNLDA 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++ G D+L+ TPGR+LD   +G L ++ +E+LV+DEADRMLDMGFI  I+ I   +P  R
Sbjct: 120 IKLGIDILVATPGRLLDLLTQGALTLSELEVLVLDEADRMLDMGFIVDIRRIMKALPAER 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT + E++ ++++ L+ P  IEV+  ++ AE +    +       ++  LL  +
Sbjct: 180 QTLLFSATFSSEIKALADDLLKEPTLIEVDPSNTAAEQVTQRIIQV--DRERRRELLSHM 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F   K+    L   ++K G    AIHG+  Q +R + L++F+EG +++
Sbjct: 238 I-GRGNWQRVLVFVRTKQIADRLAQQMQKDGLDTVAIHGDKSQGARNRALADFREGKVRV 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV NF++P  AE+YIHRIGRTGRAGR G+A +LV+++++  + 
Sbjct: 297 LVATDIAARGLDIDQLPHVINFELPQMAEDYIHRIGRTGRAGRGGEAISLVSQDELGQLK 356

Query: 359 AIEKLIEK--KVDWLNGDLSSLNP 380
            IE LI +   V+ L G   S  P
Sbjct: 357 GIEALIGQSLSVEILEGYEPSGKP 380


>gi|254520792|ref|ZP_05132848.1| DEAD-box ATP dependent DNA helicase [Clostridium sp. 7_2_43FAA]
 gi|226914541|gb|EEH99742.1| DEAD-box ATP dependent DNA helicase [Clostridium sp. 7_2_43FAA]
          Length = 526

 Score =  282 bits (721), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 144/373 (38%), Positives = 231/373 (61%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL   ++ ++ D G+ KP+ IQ + IP+ +Q +D+ G AQTGTGKTA+F   ++  
Sbjct: 6   FSNLGLKDTLLKSINDLGFEKPSQIQAEAIPVAIQGYDLIGQAQTGTGKTAAFGCGIINH 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + K          +IL PTRELA QV D  ++  K  +LT+  + GG P   Q + L+R 
Sbjct: 66  ISKKSGL----SAIILAPTRELAIQVNDELKRLSKYDDLTILPVYGGDPITNQIRALKRN 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++++ TPGR+LDH  RG + ++ I+ LV+DEAD ML+MGFI  +++I   +P  RQTLL
Sbjct: 122 VNIVVGTPGRVLDHIKRGTIKLDQIKFLVLDEADEMLNMGFIDDLEDIIKQLPSERQTLL 181

Query: 183 FSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           FSATM D+++K+++ +++ + K I +   S T  TI   F  V+   ++   C +L    
Sbjct: 182 FSATMPDQIRKLAKRYMKPDAKHISIKKTSMTVSTISQNFFEVSHKTRFEALCRVLD--- 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              DT  + IIFC  KK V  L   ++ +G+ V  +HG++ Q  R++ L  FKEG++  +
Sbjct: 239 --FDTPSSAIIFCRTKKGVDELVEGMQSRGYVVEGMHGDMSQAHRLRTLKKFKEGSLNYL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HV N+D+P   E+Y+HRIGRTGRA R G A++LV+ ++   +  
Sbjct: 297 VATDVAARGIDVEGITHVINYDLPQDVESYVHRIGRTGRANREGIAYSLVSPKEYSMLKQ 356

Query: 360 IEKLIEKKVDWLN 372
           I+ + +  +   N
Sbjct: 357 IKSVTKSDISRKN 369


>gi|153830439|ref|ZP_01983106.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           623-39]
 gi|229514213|ref|ZP_04403674.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
 gi|254285788|ref|ZP_04960751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           AM-19226]
 gi|148874080|gb|EDL72215.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           623-39]
 gi|150424285|gb|EDN16223.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           AM-19226]
 gi|229348193|gb|EEO13151.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
 gi|327485774|gb|AEA80180.1| ATP-dependent RNA helicase VCA0768 [Vibrio cholerae LMA3894-4]
          Length = 422

 Score =  282 bits (721), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 149/379 (39%), Positives = 231/379 (60%), Gaps = 9/379 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGL  +++  + + G V PTPIQ + IP VLQ  DV   AQTGTGKTA+F LP++
Sbjct: 6   ITFSQLGLDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65

Query: 61  T-ILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
              +E+   R    +  R L+L PTRELA QV D+ + Y K   L +  + GG   + Q 
Sbjct: 66  QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G D+LI TPGR+LDH +   L +  +E+LV+DEADRMLDMGF+P +Q +   +  
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSAT   +++ V+   +++P  ++V   +STAET++           +K  LL 
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPV--DKKRKRELLS 243

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L+ S++  +  ++F   ++    L   L+  G    +I+G+  Q +R K L +FK G +
Sbjct: 244 YLIGSKN-WQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L++ ++   
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQ 362

Query: 357 IDAIEKLIEKKV--DWLNG 373
           ++AIE+L+  ++  +WL G
Sbjct: 363 LEAIERLLNTRLPQEWLKG 381


>gi|326798202|ref|YP_004316021.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21]
 gi|326548966|gb|ADZ77351.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21]
          Length = 419

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 149/372 (40%), Positives = 216/372 (58%), Gaps = 3/372 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY  PTPIQ + IP+VL   D+ G AQTGTGK+A+F+LP+L
Sbjct: 1   MSFKELKLIDPLLKAIHKEGYETPTPIQSQAIPVVLSGRDLLGCAQTGTGKSAAFILPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     + +  + L+L PTRELA Q+ ++   YG+   L   ++ GG+    Q   L+
Sbjct: 61  QQLNSLPNKEKAVKALVLAPTRELAIQINESIATYGQLLPLKHQVVYGGVNINTQISGLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+LD   +  L +  +   V+DEADRMLDMGFI  I+ + +L+P  RQT
Sbjct: 121 KGIDILVATPGRLLDLVGQRVLTLRAVSHFVLDEADRMLDMGFIHDIKKVVALLPIKRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+ K++   L+NP R+EV   SSTAE +       YA        L   L 
Sbjct: 181 LFFSATMPPEITKLANTLLKNPVRVEVTPVSSTAEKVTQV---VYAVDKANKPKLLLHLL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +   + ++F   K     L   L KQG    AIHGN  Q +R   L  FK G +++++
Sbjct: 238 KSEVRDHVLVFTRTKHGADRLVKFLAKQGVQAAAIHGNKSQNARQNALQAFKSGQLKVLI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++  V NFD+PN  E Y+HRIGRTGRAG  GKA +    E+  ++ +I
Sbjct: 298 ATDIAARGIDVEELKFVINFDLPNEPETYVHRIGRTGRAGASGKALSFCDLEERPYLQSI 357

Query: 361 EKLIEKKVDWLN 372
             L  + +  +N
Sbjct: 358 NNLTNQAIPVIN 369


>gi|265994970|ref|ZP_06107527.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|262766083|gb|EEZ11872.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
          Length = 455

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 153/386 (39%), Positives = 230/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 9   FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 68

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 69  IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 129 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I         +  ++  LL  +L 
Sbjct: 189 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRR--LLSAMLT 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 247 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 306 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 364

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 365 AVERVTRSKLSIKDAPVKLAPAPVAK 390


>gi|84498694|ref|ZP_00997447.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
 gi|84381031|gb|EAP96918.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
          Length = 601

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 145/361 (40%), Positives = 217/361 (60%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGL  +V+ A+ D GY  P+PIQ  TIP +L    V G+AQTGTGKTA+F LP+L+ 
Sbjct: 23  FSDLGLDERVLRALKDVGYETPSPIQAATIPALLAGRHVVGLAQTGTGKTAAFALPILSR 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+    + + P+ L+L PTRELA QV + FEKY      + V  + GG  +  Q   L R
Sbjct: 83  LD---LKQKTPQALVLAPTRELALQVCEAFEKYASRMPGVHVLPVYGGQAYGVQLSALRR 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGRI+DH  +G L ++ +  LV+DEAD ML MGF   ++ I +  P  +   
Sbjct: 140 GVHIVVGTPGRIMDHLEKGTLDLSELRFLVLDEADEMLKMGFAEDVETILADTPAEKHVA 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  +++++S+ +L +   I V   + TA  I   ++  +  Y +K   L ++L+ 
Sbjct: 200 LFSATMPSQIRRISKKYLTDALEITVERTTETAPNITQRYL--FCSYPQKIDALTRILEV 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++  +  I+F   K     L   L  +GFS  AI+G+I Q  R + ++  K G + ++VA
Sbjct: 258 EN-FEGMIVFVRTKNETEMLAEKLRARGFSATAINGDIAQNQRERTVAQLKSGKLDILVA 316

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A + V   +   + AIE
Sbjct: 317 TDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFVTPREKYLLKAIE 376

Query: 362 K 362
           K
Sbjct: 377 K 377


>gi|153824344|ref|ZP_01977011.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           MZO-2]
 gi|254226198|ref|ZP_04919793.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V51]
 gi|125621300|gb|EAZ49639.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V51]
 gi|149741898|gb|EDM55927.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           MZO-2]
          Length = 422

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 149/379 (39%), Positives = 231/379 (60%), Gaps = 9/379 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGL  +++  + + G V PTPIQ + IP VLQ  DV   AQTGTGKTA+F LP++
Sbjct: 6   ITFSQLGLDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65

Query: 61  T-ILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
              +E+   R    +  R L+L PTRELA QV D+ + Y K   L +  + GG   + Q 
Sbjct: 66  QRFIEQPWQRETNSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G D+LI TPGR+LDH +   L +  +E+LV+DEADRMLDMGF+P +Q +   +  
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSAT   +++ V+   +++P  ++V   +STAET++           +K  LL 
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPV--DKKRKRELLS 243

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L+ S++  +  ++F   ++    L   L+  G    +I+G+  Q +R K L +FK G +
Sbjct: 244 YLIGSKN-WQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L++ ++   
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQ 362

Query: 357 IDAIEKLIEKKV--DWLNG 373
           ++AIE+L+  ++  +WL G
Sbjct: 363 LEAIERLLNTRLPQEWLKG 381


>gi|187921780|ref|YP_001890812.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phytofirmans PsJN]
 gi|187720218|gb|ACD21441.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 479

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 155/373 (41%), Positives = 221/373 (59%), Gaps = 15/373 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  + D  Y  PTP+Q+K IP VL  +DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIDPLLRNLQDLNYQTPTPVQVKAIPAVLSGNDVMAAAQTGTGKTAGFALPLL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L          RARV     L+L PTRELA QV  +F  YGK  +L      GG+   
Sbjct: 61  QRLVQHGPEVSSNRARV-----LVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSIN 115

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q  KL +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + 
Sbjct: 116 PQMMKLRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFERELNAVFAA 175

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQTLLFSAT TD+++ ++   L+ P  I V+ P++TA  I+   V        K  
Sbjct: 176 LPAQRQTLLFSATFTDDIRTMAAGILRGPVNISVSPPNATASRIKQWVVPV--DKKNKPD 233

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L   L+ +++  ++ ++F   +  V  L   L+K G+SV  IHG+  Q +R++ L  FK 
Sbjct: 234 LFMHLV-AENNWEHALVFVKTRNGVDYLAAILDKAGYSVDTIHGDKPQPARLRALERFKT 292

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G + ++VA+D+AARGLDI ++  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++
Sbjct: 293 GEVSMLVATDVAARGLDIDNLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADE 352

Query: 354 IKHIDAIEKLIEK 366
              + AIE LI +
Sbjct: 353 APQLAAIEALIRQ 365


>gi|261218608|ref|ZP_05932889.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261321895|ref|ZP_05961092.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|260923697|gb|EEX90265.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261294585|gb|EEX98081.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
          Length = 462

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 153/386 (39%), Positives = 230/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 16  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 76  IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 135

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 136 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 195

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I         +  ++  LL  +L 
Sbjct: 196 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRR--LLSAMLT 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 254 DAD-MRSVIVFTRTKHGADTVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 312

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 313 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 371

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 372 AVERVTRSKLSIKDAPVKLAPAPVAK 397


>gi|333029481|ref|ZP_08457542.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
 gi|332740078|gb|EGJ70560.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
          Length = 606

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 148/376 (39%), Positives = 236/376 (62%), Gaps = 10/376 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
           +F +LG+S +++ A+ + GY  P P+Q + +P +L + +DV  +AQTGTGKTA+F LP  
Sbjct: 3   NFEELGVSAEILKAITEMGYEHPMPVQEEVVPYLLGENNDVVALAQTGTGKTAAFGLP-- 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
            I++K     R+P++L+L PTREL  Q+AD+   Y K    L V  + GG   ++Q + L
Sbjct: 61  -IIQKVDVENRVPQSLVLCPTRELCLQIADDLYNYSKYIKGLKVIPVYGGSSIDSQIRSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD  NRG + ++ I+ +V+DEAD ML+MGF   I +I   VP  R 
Sbjct: 120 KRGVHIIVATPGRLLDLMNRGTVSLSTIKNVVMDEADEMLNMGFTESINSILQDVPKDRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+N+LQNPK I +   +  ++ ++H     +A+   K A L+++ 
Sbjct: 180 TLLFSATMSPEIARISKNYLQNPKEITIGRKNEGSQNVKHVVYKVHAK--DKYAALKRIA 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +  GIIFC  ++    +   L K G++  ++HG + Q  R  ++  F+   IQL+
Sbjct: 238 DFYPQIY-GIIFCRTRRETQEIADLLIKDGYNADSLHGELSQAQRDAVMQKFRMRNIQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLRESGKLRD 356

Query: 360 IEKLIEKKVDWLNGDL 375
           IEK+I KK +  NG+L
Sbjct: 357 IEKIIGKKFE--NGEL 370


>gi|134292532|ref|YP_001116268.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134135689|gb|ABO56803.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
           G4]
          Length = 483

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 154/370 (41%), Positives = 222/370 (60%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  + D  Y  PTP+Q   IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIDPLLRTLQDLNYQTPTPVQANAIPAVLGGKDVMAAAQTGTGKTAGFALPLL 60

Query: 61  T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +++ G A      R L+L PTRELA QV  +F +YGK  +L      GG+    Q  K
Sbjct: 61  QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + +E LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT TD+++ ++   L+NP  I V+ P++TA  I+   V        K  L   L
Sbjct: 181 QTLLFSATFTDDIRAMAATILRNPVNISVSPPNTTASRIKQWVVPV--DKRNKPELFMHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +++  ++ ++F   +  V  L   L++ G++V  IHG+  Q +R++ L  FK   +Q+
Sbjct: 239 V-AENKWEHALVFVKTRAGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKARDVQM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPMVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEKKV 368
           AIE LI K +
Sbjct: 358 AIEALIGKTL 367


>gi|260770147|ref|ZP_05879080.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
 gi|260615485|gb|EEX40671.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
          Length = 422

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 153/378 (40%), Positives = 226/378 (59%), Gaps = 11/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG++P +V  +   G   PT IQ + IP VL+  DV   AQTGTGKTA+F LP++  
Sbjct: 8   FLPLGIAPALVERLSALGIHTPTEIQAQAIPHVLEGKDVLAGAQTGTGKTAAFGLPLIQR 67

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 + R P     R L+L PTRELA QV DN + Y +   L +    GG     Q +
Sbjct: 68  FVDHPLQ-REPNSKDIRALVLVPTRELAQQVFDNLQSYAQGSELKIVTAYGGTSMNVQKQ 126

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GAD+LI TPGR+LDH +   L + N E LV+DEADRMLDMGF+P IQ +   +   
Sbjct: 127 NLRGGADILIATPGRLLDHAHVKTLYLGNAEALVLDEADRMLDMGFMPDIQRVLRKMQHE 186

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL FSAT   +++  +   +QNP  ++V   +STA+T+E           +K  LL  
Sbjct: 187 RQTLFFSATFDSKIKAFAHRMMQNPVEVQVAPSNSTADTVEQMVYPV--DKKRKRELLAY 244

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ S++  +  ++F   K+    L   L+  G    +I+G+  Q +R K L +FK G ++
Sbjct: 245 LIGSRN-WQQVLVFTRTKQGSDALAQELKLDGIKAASINGDKSQGARQKALDDFKSGKVR 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++A+D+AARG+DI  +  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L++ ++   +
Sbjct: 304 ALIATDVAARGIDIAQLEQVVNFDMPFKAEDYVHRIGRTGRAGKAGFAVSLMSHDEQPLL 363

Query: 358 DAIEKLIEKKV--DWLNG 373
           +AIE+L++K++  +WL G
Sbjct: 364 EAIERLLDKRLPQEWLKG 381


>gi|167622911|ref|YP_001673205.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167352933|gb|ABZ75546.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 432

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 152/369 (41%), Positives = 223/369 (60%), Gaps = 11/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P+++ A+ + GY K TPIQ + IP V +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFAPEILRAISECGYEKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  TIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             +       GR+  R    LIL PTRELAAQ+ADN   Y K  ++ V  ++GG+  ++Q
Sbjct: 61  QKMLDNPSTTGRSNAR---ALILTPTRELAAQIADNINDYAKYLDMKVVTVLGGVKMDSQ 117

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL+RGAD++I TPGR+L+H     L ++N++ LV+DEADRMLDMGF   IQ I   V 
Sbjct: 118 ATKLKRGADIIIATPGRLLEHIVACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVN 177

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT +  +++++   +  P  I  +  ++TA T+    V    +  +K  LL
Sbjct: 178 KKRQNLLFSATFSTAVKQLANVMMVKPNIIAADKQNTTAVTVSQ--VVYPVEQRRKRELL 235

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +L+  +   K  ++F   +     L   L   G     +HG   Q SR + L  FKEG 
Sbjct: 236 SELI-GKKNWKQVLVFTATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREFKEGK 294

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+++AARGLDI  + +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+ +
Sbjct: 295 MRVLVATEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEER 354

Query: 356 HIDAIEKLI 364
            +  IEKLI
Sbjct: 355 TLADIEKLI 363


>gi|306838409|ref|ZP_07471254.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. NF
           2653]
 gi|306406549|gb|EFM62783.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. NF
           2653]
          Length = 455

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 153/386 (39%), Positives = 230/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 9   FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 68

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 69  IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 129 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I         +  ++  LL  +L 
Sbjct: 189 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRR--LLSAMLT 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 247 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 306 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 364

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 365 AVERVTRSKLSIKDAPVKLAPAPVAK 390


>gi|319956997|ref|YP_004168260.1| dead/deah box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
 gi|319419401|gb|ADV46511.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
          Length = 462

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 141/362 (38%), Positives = 224/362 (61%), Gaps = 6/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P+V   V  AG+ +P+PIQ + IP++L+  D+ G A TGTGKTA+F LP+L
Sbjct: 1   MTFKDFDLHPEVAKGVRIAGFKEPSPIQKEAIPIILEGRDLVGQAHTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + +G     + R L++ PTRELA QV+D     G+   +    + GG+ +  Q   + 
Sbjct: 61  DRIARGE----IERALVITPTRELATQVSDELYHLGRFAGIRTLAVYGGVGYGRQIALIH 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+ D + +GK+ + N E++V+DEAD MLDMGF+  ++ I   +P  RQT
Sbjct: 117 RGVQIVVATPGRLKDLYQKGKIDVFNPEVVVLDEADEMLDMGFLDDVREIFEYIPQNRQT 176

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++++  L  P+ I V    +T       +     +  +  A+++ LL+
Sbjct: 177 LLFSATMPDPIKELADTLLYEPEFISVVGEETTKNVDIEQYYYVINENQRDEAIVR-LLE 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++  K  +IFC  K+ V  L   L+  GF+   +HG+IDQ  R  I+ +F+ G  ++++
Sbjct: 236 TENYDK-ALIFCRMKREVDRLAEELKALGFNAAGLHGDIDQMERDAIVKSFRRGETRILI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI +V HVFN+ +P   ++Y+HRIGRTGRAG+ G+A TL + E+ + +  I
Sbjct: 295 ATDVAARGLDIKNVTHVFNYHIPFDPQSYVHRIGRTGRAGKRGRAITLASTEEFRELQRI 354

Query: 361 EK 362
            K
Sbjct: 355 RK 356


>gi|332289496|ref|YP_004420348.1| ATP-dependent RNA helicase DeaD [Gallibacterium anatis UMN179]
 gi|330432392|gb|AEC17451.1| ATP-dependent RNA helicase DeaD [Gallibacterium anatis UMN179]
          Length = 590

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 142/370 (38%), Positives = 231/370 (62%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGL   ++ A+ D G++ P+PIQ   IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 1   MTFADLGLPENLLSAISDLGFINPSPIQQACIPHLLNGEDVLGMAQTGSGKTAAFALPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           + ++  +   + P+ L++ PTRELA QVAD  E++ KN   + +  + GG  ++ Q + L
Sbjct: 61  SKIDLDK---KYPQLLVMAPTRELAIQVADACEQFAKNLKGINIVTVYGGQRYDIQLRAL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  R  L ++ ++ +V+DEAD ML MGFI  ++ + + +P + Q
Sbjct: 118 KQGAQVVVGTPGRILDHIRRKTLDLSALKAIVLDEADEMLRMGFIEDVETVMAELPESHQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F++ P+ I++ +   TA  I   +   +    KK   L + L
Sbjct: 178 TALFSATMPEPIRRITRRFMREPQEIKIQSTQQTAPDITQSY--WFVNGFKKSEALVRFL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++     I+F   K     +   LE+ GF   A++G++ Q+ R + L   + G + ++
Sbjct: 236 EVEE-FDAAIVFTRTKTGTTEVTDLLERNGFRCAALNGDMTQQLREQTLDKLRNGRLDIV 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P   E+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 295 VATDVAARGIDIDRISLVVNYDIPLDPESYVHRIGRTGRAGRAGRALLFVEAREKRLLRN 354

Query: 360 IEKLIEKKVD 369
           IE+L++K VD
Sbjct: 355 IERLMKKTVD 364


>gi|325959925|ref|YP_004291391.1| DEAD/DEAH box helicase domain-containing protein [Methanobacterium
           sp. AL-21]
 gi|325331357|gb|ADZ10419.1| DEAD/DEAH box helicase domain protein [Methanobacterium sp. AL-21]
          Length = 529

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 149/369 (40%), Positives = 232/369 (62%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +S ++  AV D G+ + TPIQ   IP VL+  DV G AQTGTGKTA+F +P+L  
Sbjct: 6   FKDLNISSEIQRAVEDMGFEEATPIQSLAIPHVLEGKDVTGQAQTGTGKTAAFGIPILET 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKLE 120
           ++      R  + +IL PTRELA QVA+  +K  K Y   + +L   GG P E Q K L+
Sbjct: 66  VDPSN---RDLQAVILCPTRELAIQVAEEMKKLSK-YMRKIGILPVYGGQPIERQIKALK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  ++I TPGR++DH  RG + M ++++L++DEAD MLDMGF   I+ +   +P  RQ 
Sbjct: 122 KGVQIIIGTPGRVMDHMRRGTIDMGSVKMLILDEADEMLDMGFREDIEFVLDYIPDERQI 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ ++  ++  + ++P+ ++V     T   I+  +     +   K  +L +LL 
Sbjct: 182 LLFSATMSPDILYITRRYQESPEFLKVVPKELTVPEIKQIYFEVKEKM--KLDVLSRLLD 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  K  ++FCN K+ V  L + L+ +G++   +HG++ QR R  ++S F+ G I+++V
Sbjct: 240 IND-FKLSLVFCNTKRRVDKLVNHLQIRGYAADGLHGDMSQRQRDNVMSKFRSGNIEILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ +V  VFNFDVPN  E Y+HRIGRTGRAG+ G A+T V+ +++  +  I
Sbjct: 299 ATDVAARGIDVDNVEAVFNFDVPNDDEYYVHRIGRTGRAGKTGIAYTFVSGKEVYQLRDI 358

Query: 361 EKLIEKKVD 369
            +  + K++
Sbjct: 359 MRYTKTKIE 367


>gi|306843924|ref|ZP_07476519.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO1]
 gi|306275679|gb|EFM57403.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO1]
          Length = 455

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 153/386 (39%), Positives = 230/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 9   FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 68

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 69  IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 129 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I         +  ++  LL  +L 
Sbjct: 189 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRR--LLSAMLT 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 247 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 306 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 364

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 365 AVERVTRSKLSIKDAPVKLAPAPVAK 390


>gi|251793160|ref|YP_003007888.1| cold-shock deAd box protein a [Aggregatibacter aphrophilus NJ8700]
 gi|247534555|gb|ACS97801.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Aggregatibacter aphrophilus NJ8700]
          Length = 600

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 149/373 (39%), Positives = 234/373 (62%), Gaps = 13/373 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGL   ++ AV D G+  P+PIQ   IP +L+  DV G+AQTG+GKTA+F LP+L
Sbjct: 6   MTFADLGLPEFILNAVSDLGFETPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFSLPIL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117
             ++      + P+ L++ PTRELA QVAD   +F KY K  N  V  L GG  ++ Q +
Sbjct: 66  AKIDPAE---KHPQLLVMAPTRELAIQVADACEHFVKYAKGIN--VVTLYGGQRYDIQLR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++GA V++ TPGRILDH  RG L +  ++ +V+DEAD ML MGFI  ++ + + +P  
Sbjct: 121 ALKQGAQVVVGTPGRILDHLRRGTLSLAELKAIVLDEADEMLRMGFIDDVETVMAELPEH 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
            QT LFSATM + ++++++ F+++P+ +++     +A  I + C+   Y    +K   L 
Sbjct: 181 HQTALFSATMPEPIRRITKRFMKDPQEVKIKATQQSAPDIAQSCW---YVHGLRKNDALL 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + L+ +D     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++
Sbjct: 238 RFLEVED-FDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSL 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + 
Sbjct: 297 DIVVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRL 356

Query: 357 IDAIEKLIEKKVD 369
           +  +E LI+K ++
Sbjct: 357 LRNVEHLIKKNIE 369


>gi|116329398|ref|YP_799118.1| ATP-dependent RNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330001|ref|YP_799719.1| ATP-dependent RNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116122142|gb|ABJ80185.1| ATP-dependent RNA helicase (superfamily II) [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116123690|gb|ABJ74961.1| ATP-dependent RNA helicase (superfamily II) [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 513

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 142/364 (39%), Positives = 234/364 (64%), Gaps = 7/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++L LS ++  A+L+ G+ + +PIQ + IP++L+  D+ G AQTGTGKTA+F +P +
Sbjct: 4   LKFSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPAI 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
            +LE      +  + LIL PTREL  QV++ F K  K   N  V  + GG   E Q K L
Sbjct: 64  ELLE---VESKHLQALILCPTRELVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQLKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   ++I TPGR++DH  RG + +N+I+I+V+DEAD MLDMGF   ++ I    P  RQ
Sbjct: 121 RKNPQIVIATPGRMMDHMRRGSIRLNDIKIVVLDEADEMLDMGFREDMEFILKDTPIDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++FSATMT+++  + + F ++P+ I+V     +A  IE  +     Q + K   L +L+
Sbjct: 181 TIMFSATMTEDILTLMKRFQKHPQIIDVTHQKLSAPKIEQIYYEI--QENAKGEALARLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++ +K  ++FCN K  V  +   L+ +G+   A+HG+++Q+ R K+++ F+ G I+++
Sbjct: 239 EYRN-VKLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMNGFRNGNIEIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A RG+D+ +V  VFN+D+P   E+Y+HRIGRTGRAG+ G AF+ +  + I ++  
Sbjct: 298 VATDVAGRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKK 357

Query: 360 IEKL 363
           IE++
Sbjct: 358 IERI 361


>gi|172060994|ref|YP_001808646.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171993511|gb|ACB64430.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 512

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 152/390 (38%), Positives = 233/390 (59%), Gaps = 34/390 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 38  FASLGLSPEIVSALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 97

Query: 61  ------TILEKGRA---------RVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99
                 T+ ++ R          RVR P+       L+L PTRELA QV      YGK+ 
Sbjct: 98  FAQLQKTLAQQPRTPREPSQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 157

Query: 100 -NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L    ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRM
Sbjct: 158 KRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 217

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214
           LDMGFI  I+ I +  P +RQT+LFSAT+  ++  ++   L++P+RIE+     + ++ A
Sbjct: 218 LDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTGRLLKDPERIEIQQRLESRTNIA 277

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +T+ +           K  LL  LL+  D +   IIF   K +   L   L   GF   A
Sbjct: 278 QTVHYV-----DDRDHKDRLLDHLLRD-DALDQAIIFTATKIDADQLAGRLADAGFESAA 331

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIG
Sbjct: 332 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 391

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RTGRAGR G A +LV   +   +  IE+ +
Sbjct: 392 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 421


>gi|229528359|ref|ZP_04417750.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|229334721|gb|EEO00207.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
          Length = 422

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 148/379 (39%), Positives = 231/379 (60%), Gaps = 9/379 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGL  +++  + + G V PTPIQ + +P VLQ  DV   AQTGTGKTA+F LP++
Sbjct: 6   ITFSQLGLDSRLLNTLSELGIVNPTPIQQQAVPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65

Query: 61  T-ILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
              +E+   R    +  R L+L PTRELA QV D+ + Y K   L +  + GG   + Q 
Sbjct: 66  QRFIEQPWQRETNSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G D+LI TPGR+LDH +   L +  +E+LV+DEADRMLDMGF+P +Q +   +  
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSAT   +++ V+   +++P  ++V   +STAET++           +K  LL 
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQIVYPV--DKKRKRELLS 243

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L+ S++  +  ++F   ++    L   L+  G    +I+G+  Q +R K L +FK G +
Sbjct: 244 YLIGSKN-WQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L++ ++   
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQ 362

Query: 357 IDAIEKLIEKKV--DWLNG 373
           ++AIE+L+  ++  +WL G
Sbjct: 363 LEAIERLLNTRLPQEWLKG 381


>gi|119491286|ref|ZP_01623340.1| ATP-dependent RNA helicase [Lyngbya sp. PCC 8106]
 gi|119453450|gb|EAW34612.1| ATP-dependent RNA helicase [Lyngbya sp. PCC 8106]
          Length = 509

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 150/360 (41%), Positives = 219/360 (60%), Gaps = 5/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG+S      +   G+ +PTP+QI++IP +L   D+ G AQTGTGKTA+F LP   I
Sbjct: 42  FVELGISEARAQHLESIGFTEPTPVQIQSIPQILSGRDIVGQAQTGTGKTAAFSLP---I 98

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+   + +  + LIL PTRELA QV D   K     +L V  + GG   E Q ++LERG
Sbjct: 99  LEQIDHQAKDVQALILTPTRELAMQVKDAIRKMSNERSLYVLTVYGGQSIERQVQRLERG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LD  +RGKL ++ I+ LV+DEAD ML MGFI  ++ I       RQT  
Sbjct: 159 VHIVVGTPGRVLDLLSRGKLKLHGIKWLVLDEADEMLSMGFIQDVEKILEASSKDRQTAF 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + K+   FL +P  ++V  P +T + I    V T  +   K   LQ +L+ +
Sbjct: 219 FSATIEPSIWKLVRKFLNSPVTVKVEQPKTTPKQISQE-VYTVPRGWTKARALQPILELE 277

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D  ++ I+F   K+    L   L+  G SV   HGN++Q  R ++L  F++  ++ +VA+
Sbjct: 278 DP-ESAIVFVRTKQAAAELTSCLQGAGHSVDEYHGNLNQSQRERLLVRFRKRQVRWIVAT 336

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  + HV N+D+P+ AE+Y+HRIGRTGRAGR GKA TL+   D + +  IE+
Sbjct: 337 DIAARGLDVDHLTHVINYDLPDNAESYVHRIGRTGRAGREGKAITLLQPMDRRKLRMIER 396


>gi|86142428|ref|ZP_01060938.1| putative ATP-dependent RNA helicase [Leeuwenhoekiella blandensis
           MED217]
 gi|85831180|gb|EAQ49637.1| putative ATP-dependent RNA helicase [Leeuwenhoekiella blandensis
           MED217]
          Length = 442

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 149/372 (40%), Positives = 229/372 (61%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ A+ D GY  PTPIQ + IP++L+  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MTFKELGLIDPILKALADKGYTHPTPIQRQAIPILLKGKDLLGSAQTGTGKTAAFTIPIL 60

Query: 61  T-ILEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             I +K   G+ + ++ + LI+ PTRELA Q+ DN ++Y K   +   ++ GG+   +Q 
Sbjct: 61  QQIYDKVGSGKGKRKL-KALIVTPTRELAIQIEDNVKEYSKYTGIQSTVIFGGVKQASQV 119

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + + +G DVL  TPGR+LD   +G + +  IE LV+DEAD+MLDMGFI  I+ I  LVP 
Sbjct: 120 QAMRKGVDVLTATPGRLLDLVKQGFIDLGTIEYLVLDEADQMLDMGFIHDIKKILKLVPH 179

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ+L FSATM  E+  +S+  L + +++ +     TAE ++      +     K  LL+
Sbjct: 180 KRQSLFFSATMPKEIIDLSKLILGDFEKVSIAPEKPTAERVDQAVY--FVSKKNKAKLLK 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L+ ++   +  ++F   K     +   L+K G    AIHGN  Q +R K L+ FKEG +
Sbjct: 238 HLIDTEKP-ETLLVFSRTKHGANKIVKVLDKAGIQAAAIHGNKSQAARQKALNAFKEGKL 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+D+ ++  V  +D+PN  E Y+HRIGRTGRA   G A +  A ++  +
Sbjct: 297 HVLVATDIAARGIDVSELELVIQYDLPNVPETYVHRIGRTGRAKASGIAISFCATDERAY 356

Query: 357 IDAIEKLIEKKV 368
           +  IEKLI++K+
Sbjct: 357 LKDIEKLIKQKI 368


>gi|295097653|emb|CBK86743.1| ATP-dependent RNA helicase CsdA [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 631

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 139/364 (38%), Positives = 228/364 (62%), Gaps = 7/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     +R P+ L+L PTRELA QVA+   ++ K+   + V  L GG  ++ Q + L +
Sbjct: 68  IDPD---LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   + + Y    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  IE
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 362 KLIE 365
           + ++
Sbjct: 362 RTMK 365


>gi|119502760|ref|ZP_01624845.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080]
 gi|119461106|gb|EAW42196.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080]
          Length = 582

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 147/367 (40%), Positives = 217/367 (59%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   +   +   GY   TPIQ  TIPL+L+  DV G+AQTGTGKTA+F LP+L  
Sbjct: 11  FNSLGLPDFLQENLQSLGYETATPIQAGTIPLLLEGRDVVGLAQTGTGKTAAFALPILAN 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++    +VR P+ L+L PTRELA QVA+ F  YG+    L +  + GG     Q K L  
Sbjct: 71  ID---VKVRSPQALVLCPTRELAQQVAEAFRSYGRGMGGLRILSIFGGADMRQQLKSLRE 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  R  + +  I  +V+DEAD ML MGFI  +  I +  P  R+  
Sbjct: 128 GTHIVVATPGRLLDHIERRSIDLTGINAVVLDEADEMLRMGFIDDVDTILAKTPKERKVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++ ++   L NP  I V   ++T E IE C+    A+ + K   L++LL  
Sbjct: 188 LFSATMPKRVRDIANKHLSNPAEISVAAAATTNENIEQCY--WLAKGASKLEALKRLLAF 245

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +DT +  I+F   +++   +   L + G     ++G++DQ+ R++ +S+ K G + ++VA
Sbjct: 246 EDT-EGVIVFTRTRESTTVIAEQLRQTGLKASPLNGDMDQKMRLRTVSDLKSGALDVLVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+DVP   E Y+HRIGRTGRAGR GKA   V   + + +  IE
Sbjct: 305 TDVAARGLDVERITHVINYDVPFDEEAYVHRIGRTGRAGRKGKAILFVVPRERRMLRNIE 364

Query: 362 KLIEKKV 368
           +L  + +
Sbjct: 365 RLTRQSI 371


>gi|326538779|gb|ADZ86994.1| DEAD/DEAH box helicase domain protein [Brucella melitensis M5-90]
          Length = 455

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 153/386 (39%), Positives = 230/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 9   FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 68

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 69  IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 129 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I         +  ++  LL  +L 
Sbjct: 189 ALFSATMPKEIASLAERLLRDPVRVEVAPQGATASEITQVVHPVPTKEKRR--LLSAMLT 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 247 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 306 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 364

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 365 AVERVTRSKLSIKDAPVKLAPAPVAK 390


>gi|261325143|ref|ZP_05964340.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261752356|ref|ZP_05996065.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261301123|gb|EEY04620.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261742109|gb|EEY30035.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
          Length = 462

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 153/386 (39%), Positives = 230/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 16  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 76  IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 135

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 136 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 195

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I         +  ++  LL  +L 
Sbjct: 196 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRR--LLSAMLT 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 254 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 312

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 313 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 371

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 372 AVERVTRSKLSIKDAPVKLAPAPVAK 397


>gi|260545280|ref|ZP_05821021.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260754789|ref|ZP_05867137.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260758012|ref|ZP_05870360.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260761835|ref|ZP_05874178.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260883806|ref|ZP_05895420.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|261214040|ref|ZP_05928321.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|260096687|gb|EEW80562.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260668330|gb|EEX55270.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260672267|gb|EEX59088.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260674897|gb|EEX61718.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260873334|gb|EEX80403.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|260915647|gb|EEX82508.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
          Length = 458

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 153/386 (39%), Positives = 230/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 16  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 76  IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 135

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 136 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 195

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I         +  ++  LL  +L 
Sbjct: 196 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRR--LLSAMLT 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 254 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 312

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 313 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 371

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 372 AVERVTRSKLSIKDAPVKLAPAPVAK 397


>gi|115352130|ref|YP_773969.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115282118|gb|ABI87635.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
          Length = 512

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 152/390 (38%), Positives = 233/390 (59%), Gaps = 34/390 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 38  FASLGLSPEIVSALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 97

Query: 61  ------TILEKGRA---------RVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99
                 T+ ++ R          RVR P+       L+L PTRELA QV      YGK+ 
Sbjct: 98  FAQLQKTLAQQPRTPREPSQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 157

Query: 100 -NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L    ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRM
Sbjct: 158 KRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 217

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214
           LDMGFI  I+ I +  P +RQT+LFSAT+  ++  ++   L++P+RIE+     + ++ A
Sbjct: 218 LDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTGRLLKDPERIEIQQRLESRTNIA 277

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +T+ +           K  LL  LL+  D +   IIF   K +   L   L   GF   A
Sbjct: 278 QTVHYV-----DDRDHKDRLLDHLLRD-DALDQAIIFTATKIDADQLAGRLADAGFESAA 331

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIG
Sbjct: 332 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 391

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RTGRAGR G A +LV   +   +  IE+ +
Sbjct: 392 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 421


>gi|257464721|ref|ZP_05629092.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor
           202]
 gi|257450381|gb|EEV24424.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor
           202]
          Length = 604

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 232/370 (62%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   ++ AV + G+V P+PIQ   IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 6   LTFADLGLPQSILDAVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPIL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             ++  +   R P+ L++ PTRELA QVAD  E++ KN   +    + GG  ++ Q + L
Sbjct: 66  AQIDPEQ---RYPQMLVMAPTRELAIQVADACEQFTKNMRGIRTVTIYGGQRYDIQIRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA V++ TPGRILDH  RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 KNGAQVVVGTPGRILDHIRRGTLDLSALKAIVLDEADEMLRMGFIEDVETVMAELPENHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+++P+ +++     +A  I   +      + K  ALL+  L
Sbjct: 183 TALFSATMPEPIRRITKRFMKDPQEVKIQATQRSAPDIAQSYWLVNG-FRKNDALLR-FL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +D     IIF   K   +++    E+ G+   A++G++ Q+SR + L   K G + ++
Sbjct: 241 EVED-FDAAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQSREQALDKLKSGRLDII 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 300 VATDVAARGIDIDRISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359

Query: 360 IEKLIEKKVD 369
           IE LI+K +D
Sbjct: 360 IEHLIKKPID 369


>gi|320534382|ref|ZP_08034868.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133424|gb|EFW25886.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 861

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 151/394 (38%), Positives = 233/394 (59%), Gaps = 16/394 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV D G+V PT IQ + IP++L   DV G+AQTGTGKTA+F LP+L  
Sbjct: 163 FTDLGLPRDLLKAVTDMGFVTPTAIQKEAIPVLLAGRDVVGVAQTGTGKTAAFGLPLLDA 222

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNF-EKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++   +R  + + L+L PTRELA Q A+   +   ++  L V  + GG P+  Q   L+ 
Sbjct: 223 VD---SRDSVVQALVLAPTRELALQSAEAITDMAARSRGLDVVAVYGGAPYGPQIGALKG 279

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++D  ++G L ++++   V+DEAD ML MGF   ++ I   +P  R+T 
Sbjct: 280 GAQVVVGTPGRVIDLIDKGALQLDDVRYFVLDEADEMLRMGFAEDVETIAQSLPTDRRTA 339

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +Q V+   L  P ++EV+ P+ST  T+   +      +  K   + ++L  
Sbjct: 340 LFSATMPPAIQAVARQHLHEPVQVEVSRPASTVATVHQTYAVV--PFRHKIGAVSRVLAV 397

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D  +  I+F   K    ++   L  +G    AI G++ QR R +++   + GT+ ++VA
Sbjct: 398 TDA-EAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVLVA 456

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V NFDVP  AE Y+HRIGRTGRAGRHG+A T +  ++   +  IE
Sbjct: 457 TDVAARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQIE 516

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           +L   +++ +     +L  P    D+++H  ARK
Sbjct: 517 RLTGSRLEEI-----TLPSP---ADVSEHR-ARK 541


>gi|52078994|ref|YP_077785.1| ATP-dependent RNA helicase YdbR [Bacillus licheniformis ATCC 14580]
 gi|52784366|ref|YP_090195.1| YdbR [Bacillus licheniformis ATCC 14580]
 gi|81691189|sp|Q65N62|CSHA_BACLD RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|52002205|gb|AAU22147.1| probable ATP-dependent RNA helicase YdbR [Bacillus licheniformis
           ATCC 14580]
 gi|52346868|gb|AAU39502.1| YdbR [Bacillus licheniformis ATCC 14580]
          Length = 487

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 147/371 (39%), Positives = 225/371 (60%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS  +  A+   G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F +P++  
Sbjct: 5   FQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +      ++    +++ PTRELA QV++   K G++    V  + GG     Q + L++ 
Sbjct: 65  INPESPNIQ---AIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKKN 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH NR  + +  +  +V+DEAD ML+MGFI  I++I S VP   QTLL
Sbjct: 122 PHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +++++E F+ NP+ ++V     T   I+  ++  + +  KK   L +LL  Q
Sbjct: 182 FSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHER--KKFDTLTRLLDIQ 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM  L  FK+G I+++VA+
Sbjct: 240 -SPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVAT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFDVP   E+Y+HRIGRTGRAG+ G A T +   +   + AIE+
Sbjct: 299 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQ 358

Query: 363 LIEKKVDWLNG 373
             ++K+D +  
Sbjct: 359 TTKRKMDRMKA 369


>gi|240949643|ref|ZP_04753978.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor
           NM305]
 gi|240295901|gb|EER46577.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor
           NM305]
          Length = 604

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 232/370 (62%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   ++ AV + G+V P+PIQ   IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 6   LTFADLGLPQSILDAVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPIL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             ++  +   R P+ L++ PTRELA QVAD  E++ KN   +    + GG  ++ Q + L
Sbjct: 66  AQIDPEQ---RHPQMLVMAPTRELAIQVADACEQFTKNMRGIRTVTIYGGQRYDIQIRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA V++ TPGRILDH  RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 KNGAQVVVGTPGRILDHIRRGTLDLSALKAIVLDEADEMLRMGFIEDVETVMAELPEDHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+++P+ +++     +A  I   +      + K  ALL+  L
Sbjct: 183 TALFSATMPEPIRRITKRFMKDPQEVKIQASQRSAPDIAQSYWLVNG-FRKNDALLR-FL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +D     IIF   K   +++    E+ G+   A++G++ Q+SR + L   K G + ++
Sbjct: 241 EVED-FDAAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQSREQALDKLKSGRLDII 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 300 VATDVAARGIDIDRISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359

Query: 360 IEKLIEKKVD 369
           IE LI+K +D
Sbjct: 360 IEHLIKKPID 369


>gi|306827075|ref|ZP_07460372.1| ATP-dependent RNA helicase DeaD [Streptococcus pyogenes ATCC 10782]
 gi|304430709|gb|EFM33721.1| ATP-dependent RNA helicase DeaD [Streptococcus pyogenes ATCC 10782]
          Length = 539

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 228/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               K R    + + L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  N---KIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L+++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ +++     T   ++  +V    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 236 VNQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKQMKPL 365


>gi|296104876|ref|YP_003615022.1| ATP-dependent RNA helicase DeaD [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059335|gb|ADF64073.1| ATP-dependent RNA helicase DeaD [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 631

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 139/364 (38%), Positives = 228/364 (62%), Gaps = 7/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     +R P+ L+L PTRELA QVA+   ++ K+   + V  L GG  ++ Q + L +
Sbjct: 68  IDPD---LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   + + Y    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  IE
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 362 KLIE 365
           + ++
Sbjct: 362 RTMK 365


>gi|265991134|ref|ZP_06103691.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265999460|ref|ZP_05466486.2| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|263001918|gb|EEZ14493.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263094098|gb|EEZ18020.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409073|gb|ADZ66138.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis M28]
          Length = 462

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 153/386 (39%), Positives = 230/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 16  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 76  IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 135

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 136 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 195

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I         +  ++  LL  +L 
Sbjct: 196 ALFSATMPKEIASLAERLLRDPVRVEVAPQGATASEITQVVHPVPTKEKRR--LLSAMLT 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 254 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 312

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 313 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 371

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 372 AVERVTRSKLSIKDAPVKLAPAPVAK 397


>gi|265984119|ref|ZP_06096854.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
 gi|264662711|gb|EEZ32972.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
          Length = 462

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 153/386 (39%), Positives = 230/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 16  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 76  IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 135

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 136 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 195

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I         +  ++  LL  +L 
Sbjct: 196 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRR--LLSAMLT 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 254 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 312

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 313 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 371

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 372 AVERVTRSKLSIKDAPVKLAPAPVAK 397


>gi|261212516|ref|ZP_05926801.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
 gi|260838447|gb|EEX65103.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
          Length = 422

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 157/420 (37%), Positives = 245/420 (58%), Gaps = 23/420 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+ LGL  +++  + D G V PT IQ + IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 8   FSQLGLDSRLLNTLSDLGIVNPTLIQQQAIPHVLQGRDVLAGAQTGTGKTAAFGLPLIQR 67

Query: 62  ILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +++   R    +  R L+L PTRELA QV D+ + Y K  +L +  + GG   + Q   
Sbjct: 68  FIDQPWQREENSKEIRALVLVPTRELAQQVLDSLQAYAKGTDLKIVAVYGGTSMKVQLNH 127

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+LI TPGR+LDH +   L +  +E+LV+DEADRMLDMGF+P +Q +   +   R
Sbjct: 128 LRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLR 187

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSAT   +++ V+   +++P  ++V   +STAET++           +K  LL  L
Sbjct: 188 QTLFFSATFDSKIKAVAYRIMRDPTEVQVTPSNSTAETVQQMVYPV--DKKRKRELLAYL 245

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S++  +  ++F   ++    L   L+  G    +I+G+  Q +R K L +FK G ++ 
Sbjct: 246 IGSKN-WQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRA 304

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLDI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L++ ++   ++
Sbjct: 305 LIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDETPQLE 364

Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           AIE+L+  ++  +WL G      P  E          R+ N  P++S+G    K+   +Q
Sbjct: 365 AIERLLNTRLPQEWLKG----FEPSPE---------VREENS-PRRSSGRSAEKRKMKAQ 410


>gi|229592757|ref|YP_002874876.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
 gi|229364623|emb|CAY52530.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 444

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 153/370 (41%), Positives = 221/370 (59%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F +P+L
Sbjct: 1   MTFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLL 60

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L  E  +      R LIL PTRELA QV  +  +Y ++  LT   + GG+    Q  K
Sbjct: 61  QLLTTEGPKVAANSARALILCPTRELAEQVHASVAEYAQHLPLTTYAVYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR++D F +  L +N ++ LV+DEADRMLD+GF   + NI  ++P  R
Sbjct: 121 LRKGVDILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A T++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDEIRLLAGQMLNDPLTIEVSPRNVAANTVKQWVVPV--DKKRKPELFVHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ +   K  ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +Q+
Sbjct: 239 MR-KGRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSSEVQI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V NFD+P  AE+YIHRIGRTGRAG  G+A +LV  +++  + 
Sbjct: 298 LVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLS 357

Query: 359 AIEKLIEKKV 368
           AIE L  + +
Sbjct: 358 AIEMLTRQTL 367


>gi|251782861|ref|YP_002997164.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391491|dbj|BAH81950.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 539

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 228/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               K R    + + L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  N---KIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L+++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ +++     T   ++  +V    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 236 VNQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKQMKPL 365


>gi|269125451|ref|YP_003298821.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora
           curvata DSM 43183]
 gi|268310409|gb|ACY96783.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM
           43183]
          Length = 565

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 162/410 (39%), Positives = 239/410 (58%), Gaps = 30/410 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG+  ++  A+   G V   PIQ   +P+ L+ +D+ G A+TGTGKT +F +P+L  
Sbjct: 28  FRELGVCSEIADALESEGIVDAFPIQEMALPIGLRGYDIIGQARTGTGKTLAFGIPLLQR 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E G    + PR L+L PTRELA+QV D+    G      V  + GG  +E Q + L  G
Sbjct: 88  IEHGG---KAPRGLVLAPTRELASQVTDDLLVAGGKLGTRVVAVYGGRAYEPQIQALRDG 144

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR+LD   +G L ++ I++LV+DEADRMLD+GF+P I+ I  LVP  RQT+L
Sbjct: 145 VDVVVGTPGRLLDLARQGHLDLSQIQMLVLDEADRMLDLGFLPDIERIIELVPAERQTML 204

Query: 183 FSATMTDELQKVSENFLQNPK--RIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQLL 239
           FSATM  E+  +S  +L  P   R EV+T S +T +  +H F         K  +L +LL
Sbjct: 205 FSATMPGEIVALSRRYLNRPTNVRAEVHTESEATPQVTQHVF---QTHPMDKPEVLARLL 261

Query: 240 QSQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q+     NG    ++FC  K+    +   L ++GF+  A+HG++ Q  R + L  F+ G 
Sbjct: 262 QA-----NGRGLTMVFCQTKRACDRIAADLTRRGFAAAAVHGDLGQGQRERALRAFRSGK 316

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGLD+ DV HV N++ P+ AE ++HRIGRTGRAGR G A TLV   D+ 
Sbjct: 317 VDVLVATDVAARGLDVEDVTHVINYECPDSAETHVHRIGRTGRAGREGTAVTLVDWSDLP 376

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
                 KLI   +    G+      P E    + H +   +  IP+++TG
Sbjct: 377 RW----KLINNALQLPFGE------PPETYSTSDHLYEALD--IPREATG 414


>gi|209519764|ref|ZP_03268550.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209499774|gb|EDZ99843.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 466

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 153/368 (41%), Positives = 222/368 (60%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  V D  Y  PTP+Q+K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIDPLLRNVQDRNYQIPTPVQVKAIPAVLSGKDVMAAAQTGTGKTAGFALPLL 60

Query: 61  T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +++ G A      R L+L PTRELA QV  +F  YGK  +L      GG+    Q  K
Sbjct: 61  QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIDYGKGLDLQFLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT TD+++ ++ N L+ P  I V+ P++TA  I+   V        K  L   L
Sbjct: 181 QTLLFSATFTDDIRAMAANILRGPVNISVSPPNATASKIKQWVVPV--DKKNKPDLFMHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + ++++ ++ ++F   +  V  L   L++ G++V  IHG+  Q +R++ L  FK   + +
Sbjct: 239 V-AENSWEHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTREVHM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEK 366
           AIE LI +
Sbjct: 358 AIEALIRQ 365


>gi|209559644|ref|YP_002286116.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131]
 gi|209540845|gb|ACI61421.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131]
          Length = 539

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 228/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               K R    + + L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  N---KIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L+++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ +++     T   ++  +V    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 236 VNQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKQMKPL 365


>gi|15675334|ref|NP_269508.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS]
 gi|19746376|ref|NP_607512.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS8232]
 gi|71903810|ref|YP_280613.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
 gi|71910967|ref|YP_282517.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
 gi|94988830|ref|YP_596931.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94994657|ref|YP_602755.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
 gi|13622515|gb|AAK34229.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS]
 gi|19748574|gb|AAL98011.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS8232]
 gi|71802905|gb|AAX72258.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
 gi|71853749|gb|AAZ51772.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
 gi|94542338|gb|ABF32387.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94548165|gb|ABF38211.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
          Length = 539

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 228/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               K R    + + L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  N---KIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L+++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ +++     T   ++  +V    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 236 VNQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKQMKPL 365


>gi|21910615|ref|NP_664883.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28895696|ref|NP_802046.1| ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
 gi|21904817|gb|AAM79686.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28810945|dbj|BAC63879.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
          Length = 539

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 228/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               K R    + + L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  N---KIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L+++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ +++     T   ++  +V    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 236 VNQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKQMKPL 365


>gi|152979711|ref|YP_001345340.1| DEAD/DEAH box helicase domain-containing protein [Actinobacillus
           succinogenes 130Z]
 gi|150841434|gb|ABR75405.1| DEAD/DEAH box helicase domain protein [Actinobacillus succinogenes
           130Z]
          Length = 615

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 143/369 (38%), Positives = 232/369 (62%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV + G+  P+PIQ   IP +L+  DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FGDLGLPDFILSAVSEMGFESPSPIQHACIPHLLEGRDVLGMAQTGSGKTAAFSLPLLAQ 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++      + P+ L++ PTRELA QVAD  E++ KN   + +  L GG  ++ Q + L +
Sbjct: 68  IDSDE---KYPQMLVMAPTRELAIQVADACEQFTKNAKGIRIVTLYGGQRYDIQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRILDH  RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P   QT 
Sbjct: 125 GAQVVVGTPGRILDHIKRGTLDLSALKFIVLDEADEMLRMGFIDDVETVMAELPEQHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQ 240
           LFSATM + ++++++ F+ NP+ + + +   T   I + C+   Y +  +K   L + L+
Sbjct: 185 LFSATMPEPIRRITKRFMTNPQEVRIQSTQRTNPDIAQSCW---YVRGYRKNEALLRFLE 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIF   K   +++   L+K GF   A++G++ Q++R + L   + G++ ++V
Sbjct: 242 VED-FDAAIIFTRTKTGTLDVTELLDKHGFRAAALNGDMTQQAREQTLDRLRNGSLDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRSGSAILFVEPRERRLLGNI 360

Query: 361 EKLIEKKVD 369
           E+L++K ++
Sbjct: 361 ERLMKKPIE 369


>gi|322514213|ref|ZP_08067275.1| superfamily II helicase [Actinobacillus ureae ATCC 25976]
 gi|322119906|gb|EFX91915.1| superfamily II helicase [Actinobacillus ureae ATCC 25976]
          Length = 607

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 144/370 (38%), Positives = 233/370 (62%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   ++ AV + G+V P+PIQ +TIP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 6   LTFADLGLPQSILDAVNEIGFVNPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             ++  +     P+ L++ PTRELA QVAD  E++ KN   + V  + GG  ++ Q + L
Sbjct: 66  AQIDPTQHH---PQMLVMAPTRELAIQVADACEQFTKNMKGVRVVTVYGGQRYDIQLRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G+ V++ TPGRILDH  RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 KQGSQVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+++P+ +++     +A  I   +      + K  ALL+ L 
Sbjct: 183 TALFSATMPEPIRRITRRFMKDPQEVKIQATQRSAPDITQSYWLVNG-FRKNDALLRFL- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++    E+ G+   A++G++ Q++R + L+  K G + ++
Sbjct: 241 -EVEEFDAAIIFTRTKTGTIDITELCERNGYRAAALNGDMTQQAREQTLAKLKSGRLDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V NFD+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 300 VATDVAARGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359

Query: 360 IEKLIEKKVD 369
           IE L++K +D
Sbjct: 360 IEHLMKKPID 369


>gi|325265712|ref|ZP_08132401.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
 gi|324982843|gb|EGC18466.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
          Length = 449

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 145/368 (39%), Positives = 222/368 (60%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FADL L   ++ A+  AGY  PTPIQ ++IP  L   D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSALQAAGYDSPTPIQAQSIPAALADKDIMASAQTGSGKTAAFLLPSLQK 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL-LIGGIPFEAQNKKLE 120
           I+++     + PR L+L PTRELAAQV  N + Y KN     ++ L+GG  F  Q K + 
Sbjct: 65  IVKRSEKPGKGPRVLVLTPTRELAAQVEKNAQIYAKNMKWVRSVTLVGGSSFGQQIKAMS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR++DH   G++  + +E+L++DEADRMLDMGFI  I+ I +  P  RQT
Sbjct: 125 KPIDIIVATPGRLMDHMRSGRVDFDRLEVLILDEADRMLDMGFIDDIETIVAATPEDRQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    + K++    +NP+ IE+       +  E         +  K  LL  +L+
Sbjct: 185 LLFSATWDGAVGKLARKLTKNPEVIEIEREDKQGKIDEQLLYCDDKNH--KNRLLDHILR 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +   +IF + K     L   L ++GF+   +HG++ Q  R + L + ++G  +++V
Sbjct: 243 DAN-IDQCVIFTSTKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A +     +   +  I
Sbjct: 302 ATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRSGLAISFAEVNEYMAVHKI 361

Query: 361 EKLIEKKV 368
           E+ I +K+
Sbjct: 362 ERYIGRKL 369


>gi|297620744|ref|YP_003708881.1| ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU 86-1044]
 gi|297376045|gb|ADI37875.1| ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU 86-1044]
          Length = 439

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 149/371 (40%), Positives = 222/371 (59%), Gaps = 4/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L   ++ A+  AGY  PT IQ K IP  ++  D+   AQTG+GKTA+F+LP L
Sbjct: 1   MTFDALNLHSDLLKALNAAGYKSPTEIQCKAIPKAVKGFDLRASAQTGSGKTAAFLLPAL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKK 118
              +   R     PR LIL PTRELA Q+A   +KY K  N   ++ I GG+P+  Q +K
Sbjct: 61  HHCVANPRKPTVGPRVLILSPTRELAMQIATQADKYSKFLNRVKSVCISGGVPYHVQQRK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R  ++LI TPGR++D+ N+  + ++ IEILV+DEADRMLDMGFI  ++ I +  P +R
Sbjct: 121 LRRPYEILIATPGRLIDYINQKAINLSAIEILVLDEADRMLDMGFIEPVEKIAAATPSSR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM   +  +S   L  P  I +++  +  E I             K  LL+ +
Sbjct: 181 QTLLFSATMQGSVLNLSNRLLNEPMDIVIHSEKTKHENITQKLHYVDG-LQHKNQLLEHI 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L + D +K+ I+F + K++   L   L  +G    A+HG++ QR R + ++  + G I++
Sbjct: 240 L-NDDVVKHAIVFTSTKRHASQLVFELHDKGLLAGALHGDMSQRQRSRTIAQLRTGKIKV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ ++ HV NFD+P   E+Y+HRIGRTGRAG  G A +  + +D   + 
Sbjct: 299 LVATDVAARGIDVQNITHVINFDLPRNVEDYVHRIGRTGRAGAAGTALSFASGKDTSLVK 358

Query: 359 AIEKLIEKKVD 369
            IE+   + +D
Sbjct: 359 KIEEYTGQPID 369


>gi|157960747|ref|YP_001500781.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157845747|gb|ABV86246.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 432

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 152/369 (41%), Positives = 222/369 (60%), Gaps = 11/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P+++ A+ + GY K TPIQ + IP V +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFAPEILRAISECGYEKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  TIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             +       GR+  R    LIL PTRELAAQ+ADN   Y K  +L V  + GG+  ++Q
Sbjct: 61  QKMLDNPSTTGRSNAR---ALILTPTRELAAQIADNINDYAKYLDLKVVTVYGGVKMDSQ 117

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL+RGAD++I TPGR+L+H     L ++N++ LV+DEADRMLDMGF   IQ I   V 
Sbjct: 118 ATKLKRGADIIIATPGRLLEHIIACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVN 177

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT +  +++++   +  P  I  +  ++TA T+    V    +  +K  LL
Sbjct: 178 KKRQNLLFSATFSTAVKQLANEMMVKPNVIAADKQNTTAITVSQ--VVYPVEQRRKRELL 235

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +L+  +   +  ++F   +     L   L   G     +HG   Q SR + L  FKEG 
Sbjct: 236 SELI-GKKNWQQVLVFTATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREFKEGK 294

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+++AARGLDI  + +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+ +
Sbjct: 295 MRVLVATEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEER 354

Query: 356 HIDAIEKLI 364
            +  IEKLI
Sbjct: 355 TLADIEKLI 363


>gi|89092815|ref|ZP_01165767.1| ATP-dependent RNA helicase, DEAD box family protein
           [Oceanospirillum sp. MED92]
 gi|89082840|gb|EAR62060.1| ATP-dependent RNA helicase, DEAD box family protein
           [Oceanospirillum sp. MED92]
          Length = 415

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 150/375 (40%), Positives = 229/375 (61%), Gaps = 15/375 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+FA L L P +  A+ + GY + TPIQ + I    +  D+   AQTGTGKTA+F LP+L
Sbjct: 1   MNFAALDLHPAIQSALDECGYSEMTPIQRQAIVPARRGRDILANAQTGTGKTAAFSLPVL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       E G+ R      LIL PTRELA Q+ D   +Y ++  L +  + GG+  +
Sbjct: 61  QQLADKPKELESGQVR-----ALILTPTRELAQQLFDTIGRYNQHLGLRMVAVYGGVNLD 115

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q KKL RGAD+LI TPGR+L+H N   + +   E +V+DEADRMLDMGF+  + +I  +
Sbjct: 116 TQMKKLRRGADLLIATPGRMLEHINACNVNLGTTEFVVLDEADRMLDMGFVTDVMSILDV 175

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
            P +RQTLLFSAT++D + K+S   L  P++I+    ++ A+TIEH       Q  +K  
Sbjct: 176 TPKSRQTLLFSATLSDSVHKLSNKILTRPEKIKAARHNTIADTIEHVVYPVEEQ--RKAD 233

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L  +L++ ++  +  ++F + K     L   L+  G      HG+  Q +R + +++FK 
Sbjct: 234 LFAELIKEENWFQV-LVFTSTKAQANELMMDLKYDGIEAVLCHGDKSQGARRRAVADFKA 292

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G IQ++VA+++AARGLDI  +  V N+++P  AE+Y+HR+GR GRAG  GKA + V++E+
Sbjct: 293 GKIQVLVATEVAARGLDIQGLEQVVNYNLPYLAEDYVHRVGRAGRAGMAGKAISFVSREE 352

Query: 354 IKHIDAIEKLIEKKV 368
            + + +IEKLI  ++
Sbjct: 353 EQALASIEKLIGSQI 367


>gi|310822103|ref|YP_003954461.1| RNA helicase dead [Stigmatella aurantiaca DW4/3-1]
 gi|309395175|gb|ADO72634.1| RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
          Length = 621

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 150/368 (40%), Positives = 211/368 (57%), Gaps = 2/368 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +V A+   GY +PTPIQ   +P +L+  D+ GIA TGTGKTA+F LP+L  
Sbjct: 51  FESLGLLPPLVEALSALGYEEPTPIQRAALPPLLEGKDLLGIAATGTGKTAAFSLPLLQR 110

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +  G         L+L PTRELA QVA+   +YG+   ++V  L GG     Q + L+RG
Sbjct: 111 ITPGAHAPFTASALVLVPTRELAMQVAEAIHRYGQKLGISVVPLYGGQVISQQLRVLKRG 170

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR LDH  R  L +  + ++V+DEAD MLDMGF   ++ I S  P  RQT L
Sbjct: 171 VDVVVATPGRALDHLQRKTLKLEQVRVVVLDEADEMLDMGFAEDLEAILSSTPEKRQTAL 230

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQS 241
           FSAT+   +  ++E  L+ P R+ +      +  +       Y    + K A L ++L  
Sbjct: 231 FSATLPPRIASIAERHLREPVRVRIAREKVESGELPRVRQTAYIVPRAFKVATLSRVLDV 290

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      I+FC  +  V  L  SL   G+   A+HG + Q  R +++   K  +  L+VA
Sbjct: 291 EAPTA-AIVFCRTRTEVDELTLSLNGHGWRAHALHGGMSQEQRDRVIKQLKSHSADLLVA 349

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  + HV NFDVPN  E Y+HRIGRTGRAGR G A TLV   + + +  IE
Sbjct: 350 TDVAARGLDISRLSHVVNFDVPNAPEAYVHRIGRTGRAGREGVAITLVEPREHRLLRNIE 409

Query: 362 KLIEKKVD 369
           KL  ++++
Sbjct: 410 KLTGQRIE 417


>gi|87121489|ref|ZP_01077378.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
 gi|86163332|gb|EAQ64608.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
          Length = 617

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 151/374 (40%), Positives = 227/374 (60%), Gaps = 15/374 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   V+ AV+D GY +P+PIQ ++IP +L+ HD+ G AQTGTGKTA+F LP+L+ 
Sbjct: 10  FASLGLDANVLKAVVDQGYEQPSPIQAQSIPHLLEGHDLLGQAQTGTGKTAAFALPLLSR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +       ++   L+L PTRELA QV++ F+ Y +N  +  V  + GG+ ++ Q ++L R
Sbjct: 70  INPKDKNTQL---LVLAPTRELAIQVSEAFQTYARNIPDFHVLPIYGGMSYDTQLRQLRR 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  R  L +++++ LV+DEAD ML MGFI  ++ I    P  RQ  
Sbjct: 127 GVQVVVGTPGRVMDHIRRKTLKLDSLQALVLDEADEMLRMGFIDDVEWILEHTPEQRQIA 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS--KKCALLQQLL 239
           LFSATM   +++V+   L NPK +++ T ++T  +I       Y Q S   K   L ++L
Sbjct: 187 LFSATMPSVIRQVANRHLNNPKEVKIVTKTATNTSI----TQKYWQVSGLHKLDALTRIL 242

Query: 240 Q--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +    D M   IIF   K   V L   L  +G +  A++G+I Q  R + +   K G I 
Sbjct: 243 EMSEHDGM---IIFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVERIKRGQID 299

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARGLDI  + HV N+D+P   E+Y+HRIGRTGRAGR G A   VA  + + +
Sbjct: 300 ILVATDVVARGLDIDRISHVVNYDIPYDTESYVHRIGRTGRAGRTGNAILFVAHRERRML 359

Query: 358 DAIEKLIEKKVDWL 371
            AIE+   + ++ +
Sbjct: 360 QAIERATRQPIERM 373


>gi|323127665|gb|ADX24962.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 539

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 228/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               K R    + + L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  N---KIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L+++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ +++     T   ++  +V    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 236 VNQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKQMKPL 365


>gi|251773001|gb|EES53557.1| putative ATP-dependent helicase [Leptospirillum ferrodiazotrophum]
          Length = 472

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 145/365 (39%), Positives = 224/365 (61%), Gaps = 2/365 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ D  +  PTPIQ +TIP +++  DV G+AQTG+GKT  F+LP L
Sbjct: 1   MSFETLGLNPDLLRALSDLKHESPTPIQKQTIPPIIEGRDVLGVAQTGSGKTGGFLLPSL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              ++ +      + L+L PTRELA Q+  +  +YGK       LL+GG     Q   L 
Sbjct: 61  HRNKRAQGNRTRHQILVLSPTRELAGQIERSAREYGKYLRSRTVLLVGGTDMRRQIDFLR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R  D++I TPGR++DH  RG + ++++  +V+DEADRMLDMGF+P ++ I   +   RQT
Sbjct: 121 RPWDLVIATPGRLIDHMQRGTINLSHVHTVVLDEADRMLDMGFLPDVETILKALHPERQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL- 239
           LLF+AT+   +Q +++ + ++P  I + T S+   +I+   VA  +  ++K  LL+ +L 
Sbjct: 181 LLFTATLPARIQMLTKTYQKDPVLIRLETASAPPVSIDQEVVA-ISHGAQKWGLLKTILT 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q T    +IF   K+   +L + L  +GF   A+HG+  Q  R ++LS F+ G  +++
Sbjct: 240 EPQTTEGQTLIFTRTKRGAEDLANQLLAEGFPSDALHGDKSQSQRNRVLSKFRAGQTRIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V N+D+P   E+Y+HRIGRTGRAGR G+A +     D   +  
Sbjct: 300 VATDVAARGLDIDTVTCVINYDLPQSPEDYVHRIGRTGRAGRSGRAISFCHPADRNLLRD 359

Query: 360 IEKLI 364
           IE+L+
Sbjct: 360 IERLL 364


>gi|45659052|ref|YP_003138.1| ATP-dependent RNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45602298|gb|AAS71775.1| ATP-dependent RNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 521

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 142/364 (39%), Positives = 234/364 (64%), Gaps = 7/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++L LS ++  A+L+ G+ + +PIQ + IP++L+  D+ G AQTGTGKTA+F +P +
Sbjct: 9   LKFSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTI 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
            +LE      +  + LIL PTREL  QV++ F K  K   N  V  + GG   E Q + L
Sbjct: 69  ELLE---VESKHLQALILCPTRELVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLRAL 125

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   ++I TPGR++DH  RG + ++ I+I+V+DEAD MLDMGF   ++ I    P  RQ
Sbjct: 126 RKNPQIVIATPGRMMDHMRRGSIHLDEIKIVVLDEADEMLDMGFREDMEFILKDTPADRQ 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++FSATMTD++  + + F  +P+ I+V     +A  IE  +     Q + K   L +L+
Sbjct: 186 TIMFSATMTDDVLTLMKKFQNHPQIIDVTHQKLSAPKIEQIYYEI--QENAKGEALARLI 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++ +K  ++FCN K  V  +   L+ +G+   A+HG+++Q+ R K++S F++G+I+++
Sbjct: 244 EYRN-VKLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMSGFRKGSIEIL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A RG+D+ +V  VFN+D+P   E+Y+HRIGRTGRAG+ G AF+ +  + I ++  
Sbjct: 303 VATDVAGRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKK 362

Query: 360 IEKL 363
           IE++
Sbjct: 363 IERI 366


>gi|291086515|ref|ZP_06356033.2| ATP-dependent RNA helicase DeaD [Citrobacter youngae ATCC 29220]
 gi|291067655|gb|EFE05764.1| ATP-dependent RNA helicase DeaD [Citrobacter youngae ATCC 29220]
          Length = 658

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 143/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 25  FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 85  LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G+S  A++G+++Q  R + L   K+G + +++A
Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQSLREQTLERLKDGRLDILIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 379 RTMKLTIPEVELPNAEL 395


>gi|206560480|ref|YP_002231244.1| putative ATP-dependent RNA helicase [Burkholderia cenocepacia
           J2315]
 gi|198036521|emb|CAR52418.1| putative ATP-dependent RNA helicase [Burkholderia cenocepacia
           J2315]
          Length = 514

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 151/390 (38%), Positives = 229/390 (58%), Gaps = 34/390 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLSP++V A+  AGYVKPTP+Q + IP+ +   D+   + TG+GKTA+F+LP +  
Sbjct: 38  FASLGLSPEIVSALQAAGYVKPTPVQQRAIPVGIAGRDLLVSSPTGSGKTAAFMLPAIET 97

Query: 63  LEK-----------------GRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99
             +                 G  R R P+       L+L PTRELA QV      YGK+ 
Sbjct: 98  FAQLQKTQAQQPRAPREPNQGDRRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 157

Query: 100 -NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L    ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRM
Sbjct: 158 KRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 217

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214
           LDMGFI  I+ I    P TRQT+LFSAT+  ++  ++   L++P+RIE+     + ++ A
Sbjct: 218 LDMGFIEDIETIVDATPDTRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIA 277

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +T+ +           K  LL  LL+  D +   IIF   K +   L   L   GF   A
Sbjct: 278 QTVHYV-----DDRDHKDRLLDHLLRD-DALDQAIIFTATKIDADQLAGRLADAGFESAA 331

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIG
Sbjct: 332 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 391

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RTGRAGR G A +LV   +   +  IE+ +
Sbjct: 392 RTGRAGRSGIAVSLVHHAEQGALKRIERFV 421


>gi|172039349|ref|YP_001805850.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142]
 gi|171700803|gb|ACB53784.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142]
          Length = 480

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 225/369 (60%), Gaps = 5/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS   +  +   G+  PT IQ K IPL+L+ HDV G +QTGTGKTA++ LP+L
Sbjct: 3   ISFENLGLSEARINQLQTLGFESPTEIQEKAIPLLLEGHDVLGQSQTGTGKTAAYSLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++   + V+    LIL PTRELA QVA+  + +     L +  + GG   E Q + LE
Sbjct: 63  EQIDTRNSNVQ---ALILTPTRELAQQVAEALKDFSTERRLYILTVYGGQSIERQIRSLE 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++D   R KL+++++   V+DEAD ML MGFI  ++ I    P  R T
Sbjct: 120 RGVQIVVGTPGRVIDLLERKKLVLDSLRWAVLDEADEMLSMGFIDDVKTILRKTPDARNT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM  E++ +   FL++P  + V    +    I+         +SK+ AL Q +L+
Sbjct: 180 ACFSATMPREIRDLVNQFLKSPVTVSVERTQAAPTRIDQHLYMVPRGWSKRKAL-QPILE 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D  ++ IIF   K+   +L   L++ G SV   HGN+ Q  R +++  F+EG I+L+V
Sbjct: 239 IEDP-ESAIIFVRTKQTASDLTSKLQEIGHSVDEYHGNLSQSQRERLVHRFREGKIKLVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++ HV N+D+P+ +E YIHRIGRTGRAG+ G A +LV   D + +  I
Sbjct: 298 ATDIAARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLVEPIDRRMVRQI 357

Query: 361 EKLIEKKVD 369
           EK + +K++
Sbjct: 358 EKRLRQKLE 366


>gi|71907449|ref|YP_285036.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71847070|gb|AAZ46566.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 447

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 149/368 (40%), Positives = 223/368 (60%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL+  ++ A+   GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFSSLGLAAPLLQALETLGYETPTPIQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPIL 60

Query: 61  TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +   +V     R L+L PTRELA QV  +F +YG++  ++     GG+    Q  +
Sbjct: 61  QRLSESEDKVASNSIRVLVLVPTRELAEQVHASFRQYGEHLAVSTYAAYGGVSINPQMMR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG DVL+ TPGR++D F +  +    ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRRGVDVLVATPGRLIDLFTQNAIKFKQVQTLVLDEADRMLDLGFAHELDTLFAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ +++  L++P  IEV   +ST + I+   V    +   +  L    
Sbjct: 181 QTLLFSATFSDEIRSLAKGRLRDPLSIEVAPRNSTVKAIKQWVVPVDKKRKTELFL---F 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++        ++F   ++ V  L  +L  +     AIHG+  Q +R++ L +FK G +Q+
Sbjct: 238 MRKDRKWGQVLVFVKTRRGVDELVATLLAKKIKADAIHGDKPQPARLRALESFKAGEVQI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N+D+P  AE+YIHRIGRTGRAG  G+A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPQVVNYDLPIVAEDYIHRIGRTGRAGATGQAISLVCADEAPLLA 357

Query: 359 AIEKLIEK 366
           AIE LI++
Sbjct: 358 AIETLIKQ 365


>gi|310644788|ref|YP_003949547.1| dead/deah box helicase domain protein [Paenibacillus polymyxa SC2]
 gi|309249739|gb|ADO59306.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
          Length = 481

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 149/393 (37%), Positives = 232/393 (59%), Gaps = 12/393 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  LS ++V A+   GY  PT IQ + IP+ L++ D+   +QTG+GKTA++ +P+  +
Sbjct: 6   FADYPLSEEIVRALNSLGYETPTEIQTEVIPVALEKKDLVAKSQTGSGKTAAYGIPLCEL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    +   P+ LIL PTRELA QV ++    G+   +    L G  PF  Q  +L++ 
Sbjct: 66  VDWNENK---PQALILTPTRELALQVTEDITNIGRFKRIKATPLYGKHPFHIQKAELKQR 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V + TPGR+LDH  RG L +N I  LVIDEAD ML+MGFI  +Q+I   +P  R T+L
Sbjct: 123 THVAVGTPGRVLDHIERGTLSLNRIAYLVIDEADEMLNMGFIEQVQSIIQALPNDRVTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT  +++ K+S  ++ +P  IE+     T  TI+H  +    + + K ALLQ LL  +
Sbjct: 183 FSATFPEDVAKLSRKYMNDPVEIEIKATGVTTATIDHSLIQ--VREADKLALLQDLLVVE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  +++V  L  +L    +    IHG ++Q  R ++++ F+ G  + ++A+
Sbjct: 241 NP-DSCIIFCRTQEHVDTLFRALADLEYPCDRIHGGMEQDERFEVMNAFRRGQFRYLIAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG+ GKA TL+  +D K +  IE 
Sbjct: 300 DVAARGIDITNITHVINYDIPLEKESYVHRTGRTGRAGKTGKAITLITPKDSKRLADIEA 359

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
            I   +  +        P  E +D+ + +  RK
Sbjct: 360 YIGFAIPQVKA------PSEEAVDLHREDFERK 386


>gi|237807827|ref|YP_002892267.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237500088|gb|ACQ92681.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 416

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 157/375 (41%), Positives = 222/375 (59%), Gaps = 5/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL   ++  +   GY   TPIQ   IP VL  HDV   AQTGTGKTA+F LP++
Sbjct: 1   MSFSTLGLHSDLLAVIDTLGYQTATPIQKAAIPEVLAGHDVMAGAQTGTGKTAAFALPLI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                     +  R L+L PTRELA QV  +F KY +   L   +  GG     Q   L 
Sbjct: 61  QRHLVRDTSEKAIRVLVLTPTRELAQQVHQSFVKYSQGLGLNSVVAYGGASINPQIDALN 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVL+ TPGR+L+   +  + ++ +E LV+DEADRMLDMGFI  I+ I   +P TRQT
Sbjct: 121 KGCDVLVATPGRLLELAFKELIDLSTVETLVLDEADRMLDMGFIVDIERILKRLPETRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT  D++  +S+  L+ PK IEV   ++ A  IE  F     Q  +K  L+  L+ 
Sbjct: 181 LFFSATFNDDVFSLSKTILKQPKLIEVAERNAMAAKIEQRFYEVDNQ--RKAGLVAYLIG 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++  +  +IF   K+ V  L   LEK G S  A+HG+  Q +R + L  FK G ++ +V
Sbjct: 239 SKN-WQQVLIFTRTKQAVDELAKELEKDGISAAAVHGDKSQGARDRGLEEFKTGQVRALV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + +V N+++P  AE+YIHRIGRTGRAG+ G A +LV+ ++   ++ +
Sbjct: 298 ATDVAARGLDIQQLQYVINYELPYNAEDYIHRIGRTGRAGQAGLAVSLVSNKEKYLLEDV 357

Query: 361 EKLIEKK--VDWLNG 373
           EKL  +   + W+ G
Sbjct: 358 EKLTGEHFILQWMEG 372


>gi|294828452|ref|NP_714230.2| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str.
           56601]
 gi|293386306|gb|AAN51248.2| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 516

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 142/364 (39%), Positives = 234/364 (64%), Gaps = 7/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++L LS ++  A+L+ G+ + +PIQ + IP++L+  D+ G AQTGTGKTA+F +P +
Sbjct: 4   LKFSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTI 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
            +LE      +  + LIL PTREL  QV++ F K  K   N  V  + GG   E Q + L
Sbjct: 64  ELLE---VESKHLQALILCPTRELVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLRAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   ++I TPGR++DH  RG + ++ I+I+V+DEAD MLDMGF   ++ I    P  RQ
Sbjct: 121 RKNPQIVIATPGRMMDHMRRGSIHLDEIKIVVLDEADEMLDMGFREDMEFILKDTPADRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++FSATMTD++  + + F  +P+ I+V     +A  IE  +     Q + K   L +L+
Sbjct: 181 TIMFSATMTDDVLTLMKKFQNHPQIIDVTHQKLSAPKIEQIYYEI--QENAKGEALARLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++ +K  ++FCN K  V  +   L+ +G+   A+HG+++Q+ R K++S F++G+I+++
Sbjct: 239 EYRN-VKLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMSGFRKGSIEIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A RG+D+ +V  VFN+D+P   E+Y+HRIGRTGRAG+ G AF+ +  + I ++  
Sbjct: 298 VATDVAGRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKK 357

Query: 360 IEKL 363
           IE++
Sbjct: 358 IERI 361


>gi|170733402|ref|YP_001765349.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169816644|gb|ACA91227.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 514

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 153/390 (39%), Positives = 233/390 (59%), Gaps = 34/390 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 38  FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 97

Query: 61  ------TILEKGRA---------RVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99
                 T  ++ RA         RVR P+       L+L PTRELA QV      YGK+ 
Sbjct: 98  FAQLQKTQAQQPRAPREPNQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 157

Query: 100 -NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L    ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRM
Sbjct: 158 KRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 217

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214
           LDMGFI  I+ I +  P +RQT+LFSAT+  ++  ++   L++P+RIE+     + ++ A
Sbjct: 218 LDMGFIEDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLRDPERIEIQQRLESRANIA 277

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +T+ +           K  LL  LL+  D +   IIF   K +   L   L   GF   A
Sbjct: 278 QTVHYV-----DDRDHKDRLLDHLLRD-DALDQAIIFTATKIDADQLAGRLADAGFESAA 331

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIG
Sbjct: 332 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 391

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RTGRAGR G A +LV   +   +  IE+ +
Sbjct: 392 RTGRAGRSGIAVSLVHHAEQGALKRIERFV 421


>gi|107028773|ref|YP_625868.1| DEAD/DEAH box helicase-like [Burkholderia cenocepacia AU 1054]
 gi|116690068|ref|YP_835691.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|105897937|gb|ABF80895.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
           1054]
 gi|116648157|gb|ABK08798.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           HI2424]
          Length = 516

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 153/390 (39%), Positives = 233/390 (59%), Gaps = 34/390 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 38  FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 97

Query: 61  ------TILEKGRA---------RVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99
                 T  ++ RA         RVR P+       L+L PTRELA QV      YGK+ 
Sbjct: 98  FAQLQKTQAQQPRAPREPNQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 157

Query: 100 -NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L    ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRM
Sbjct: 158 KRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 217

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214
           LDMGFI  I+ I +  P +RQT+LFSAT+  ++  ++   L++P+RIE+     + ++ A
Sbjct: 218 LDMGFIEDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIA 277

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +T+ +           K  LL  LL+  D +   IIF   K +   L   L   GF   A
Sbjct: 278 QTVHYV-----DDRDHKDRLLDHLLRD-DALDQAIIFTATKIDADQLAGRLADAGFESAA 331

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIG
Sbjct: 332 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 391

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RTGRAGR G A +LV   +   +  IE+ +
Sbjct: 392 RTGRAGRSGIAVSLVHHAEQGALKRIERFV 421


>gi|254506544|ref|ZP_05118685.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
 gi|219550417|gb|EED27401.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
          Length = 419

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 153/388 (39%), Positives = 230/388 (59%), Gaps = 11/388 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P ++  +   G+ +PT +Q + IP VL+  DV   AQTGTGKTA+F LP++  
Sbjct: 5   FESLGLCPTILSTLSSLGFEQPTEVQTQAIPHVLEGKDVLAGAQTGTGKTAAFGLPIIQK 64

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L +  A+ R P     R L+L PTRELA QV DN  +Y +   L +    GG     Q +
Sbjct: 65  LIESEAK-RDPQSNDVRALVLVPTRELAQQVFDNLVQYAQATELKIVAAYGGTSMNVQTR 123

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE+G D+LI TPGR++DH     + +   E LV+DEADRMLDMGF+P IQ I       
Sbjct: 124 NLEQGCDILIATPGRLIDHMFCKNVSLLKSEFLVLDEADRMLDMGFMPDIQRILKRFNAV 183

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL FSAT    ++ ++      P  ++V+  +STAET++           +K  LL  
Sbjct: 184 RQTLFFSATFDKRIKNIAYKLQSEPVEVQVSASNSTAETVKQMVYPV--DKKRKAELLAY 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ S++  +  ++F   K+    L   L+  G    +I+G+  Q +R K L +FK G I+
Sbjct: 242 LIGSRN-WQQVLVFTKTKQGSDALVKELKLDGIKAASINGDKSQGARQKALDDFKAGKIR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++A+D+AARGLDI ++  V NFD+P +AE+Y+HRIGRTGRAG+ G A + +++++   +
Sbjct: 301 ALIATDVAARGLDIQELEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAVSFMSRDEHYLL 360

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLE 383
           +AIE+L++ ++  +WL G   SL   +E
Sbjct: 361 EAIERLLDTRLPQEWLQGFEPSLVEEVE 388


>gi|15601523|ref|NP_233154.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121590875|ref|ZP_01678199.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121728661|ref|ZP_01681679.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V52]
 gi|147671636|ref|YP_001215545.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O395]
 gi|153818645|ref|ZP_01971312.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC
           8457]
 gi|153820657|ref|ZP_01973324.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           B33]
 gi|229506074|ref|ZP_04395583.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229510069|ref|ZP_04399549.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229605606|ref|YP_002876310.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254849928|ref|ZP_05239278.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
 gi|255746472|ref|ZP_05420419.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|262152368|ref|ZP_06028501.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
 gi|262168609|ref|ZP_06036305.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|9658191|gb|AAF96666.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121547282|gb|EAX57403.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121629072|gb|EAX61518.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V52]
 gi|126510798|gb|EAZ73392.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC
           8457]
 gi|126521700|gb|EAZ78923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           B33]
 gi|146314019|gb|ABQ18559.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           O395]
 gi|227015171|gb|ACP11380.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
 gi|229352514|gb|EEO17454.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229356425|gb|EEO21343.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229372092|gb|ACQ62514.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254845633|gb|EET24047.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
 gi|255736226|gb|EET91624.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|262023138|gb|EEY41843.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|262030819|gb|EEY49450.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
          Length = 422

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 148/379 (39%), Positives = 230/379 (60%), Gaps = 9/379 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGL  +++  + + G   PTPIQ + IP VLQ  DV   AQTGTGKTA+F LP++
Sbjct: 6   ITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65

Query: 61  T-ILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
              +E+   R    +  R L+L PTRELA QV D+ + Y K   L +  + GG   + Q 
Sbjct: 66  QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G D+LI TPGR+LDH +   L +  +E+LV+DEADRMLDMGF+P +Q +   +  
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSAT   +++ V+   +++P  ++V   +STAET++           +K  LL 
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPV--DKKRKRELLS 243

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L+ S++  +  ++F   ++    L   L+  G    +I+G+  Q +R K L +FK G +
Sbjct: 244 YLIGSKN-WQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L++ ++   
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQ 362

Query: 357 IDAIEKLIEKKV--DWLNG 373
           ++AIE+L+  ++  +WL G
Sbjct: 363 LEAIERLLNTRLPQEWLKG 381


>gi|222153378|ref|YP_002562555.1| DEAD box helicase family protein [Streptococcus uberis 0140J]
 gi|222114191|emb|CAR42728.1| DEAD box helicase family protein [Streptococcus uberis 0140J]
          Length = 561

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 146/371 (39%), Positives = 229/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 23  LKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 82

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               K R    + + L++ PTRELA Q  +   ++G++  + V  + GG   + Q K L+
Sbjct: 83  N---KIRTDENIIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIDKQIKALK 139

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L ++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 140 SGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPSERQT 199

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F++NP+ +++     T   +E  +V    Q  +K   + +L+ 
Sbjct: 200 LLFSATMPAPIKEIGVKFMKNPEHVQIKNKELTNVNVEQFYVRVKEQ--EKFDTMTRLMD 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 258 V-DQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQIDILV 316

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 317 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKTGESITFVSPNEMGYLSMI 376

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 377 ENLTKKQMKPL 387


>gi|254714133|ref|ZP_05175944.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|254716809|ref|ZP_05178620.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
          Length = 535

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 155/386 (40%), Positives = 230/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I    V       +K  LL  +L 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 326

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 327 DAD-MRSVIVFTRTKHGADTVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470


>gi|238026875|ref|YP_002911106.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1]
 gi|237876069|gb|ACR28402.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1]
          Length = 524

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 152/387 (39%), Positives = 229/387 (59%), Gaps = 31/387 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 42  FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 101

Query: 61  -TILEKGRAR-----------------VRMPRTLILEPTRELAAQVADNFEKYGKNYN-L 101
              L+K +A+                 V  P  L+L PTRELA QV      YGK+   L
Sbjct: 102 FAQLQKTQAQQPREPQSGDRRQRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRL 161

Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
               ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRMLDM
Sbjct: 162 RTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDM 221

Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV----NTPSSTAETI 217
           GFI  I+ I +  P TRQT+LFSAT+  ++  ++   L+ P+RIE+       ++ A+T+
Sbjct: 222 GFIDDIETIVAATPATRQTMLFSATLDGKIGSLTSRLLKEPERIEIVQKLEARTNIAQTV 281

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
            +           K  LL  LL+  D +   IIF   K +   L   L   GF   A+HG
Sbjct: 282 HYV-----DDRDHKDRLLDHLLRD-DALDQAIIFTATKIDADQLAGRLADAGFESAALHG 335

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 336 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 395

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RAGR G A +LV   +   +  IE+ +
Sbjct: 396 RAGRSGIAVSLVHHAEQGALKRIERFV 422


>gi|148549843|ref|YP_001269945.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida F1]
 gi|148513901|gb|ABQ80761.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 443

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 151/368 (41%), Positives = 222/368 (60%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+FA LGL   ++  +    Y  PTP+Q K IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               LE  +      R L+L PTRELA QV +N  +Y +N  L+   + GG+    Q  +
Sbjct: 61  QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+LD F +  +  N ++ LV+DEADRMLD+GF   +Q++ + +P  R
Sbjct: 121 LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D+++ ++   L +P  IEV+  ++TA +++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATATSVKQWLVPV--DKKRKADLFCHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ Q   K  ++F   +  V  L   L  +G +   IHG+  Q +R + L +FK   +Q+
Sbjct: 239 LRKQ-RWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLA 357

Query: 359 AIEKLIEK 366
           AIE L  +
Sbjct: 358 AIEVLTRQ 365


>gi|200386509|ref|ZP_03213121.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199603607|gb|EDZ02152.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 629

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 233/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+ + + V  L GG  ++ Q + L +
Sbjct: 68  LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMSGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|149189555|ref|ZP_01867838.1| ATP-dependent RNA helicase DeaD [Vibrio shilonii AK1]
 gi|148836534|gb|EDL53488.1| ATP-dependent RNA helicase DeaD [Vibrio shilonii AK1]
          Length = 634

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 147/370 (39%), Positives = 223/370 (60%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+   G+V PTPIQ   IP +L   D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             L   +   R P+ ++L PTRELA QVA   +  G+N N L V  + GG     Q + L
Sbjct: 66  NKLNLDQ---RKPQAVVLAPTRELAIQVAAEMKNLGQNINGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D  NR +L ++ +   V+DEAD ML+MGF+  +  I    P T Q
Sbjct: 123 KNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPETAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   L+K+ + FL+ P+ ++V   + T + +E  F        +K   + +LL
Sbjct: 183 RVLFSATMPPMLKKIVDRFLREPEYVDVAGKNHTVDKVEQQFWVVKG--VEKDEAMARLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVD 369
           IE++ +  ++
Sbjct: 360 IERVTKSSME 369


>gi|159901480|ref|YP_001547727.1| DEAD/DEAH box helicase domain-containing protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894519|gb|ABX07599.1| DEAD/DEAH box helicase domain protein [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 584

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 145/369 (39%), Positives = 221/369 (59%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL    + A+ + GY +PTPIQ ++I L+L  +D+   AQTGTGKTA+F LP +  
Sbjct: 4   FTELGLGEATLRAITELGYEEPTPIQAQSIGLMLSGNDIIAQAQTGTGKTAAFSLPTIER 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     V+    LIL PTRELA QV+D    YGK  N+    + GG P + Q + L+RG
Sbjct: 64  IDPKAMGVQ---ALILTPTRELAVQVSDAISAYGKYLNIRALPVYGGQPIDRQLRALKRG 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +++I TPGR++DH  RG L ++ +  +V+DEAD ML+MGF+  I+ I    P  RQT L
Sbjct: 121 VNIVIGTPGRLMDHMERGTLDLSTVRTVVLDEADEMLNMGFVDDIEYILERAPKDRQTAL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           +SATM DE+ +++  +L++P+ + +     T   I   +    A+   K  +L ++L   
Sbjct: 181 YSATMPDEIARLARKYLRSPQMVTIEREQLTVPQIRQVYYEIGAR--DKFEVLTRIL-DL 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  K  V  L   L  +G+    +HG++ Q  R +++  F+E  ++++VA+
Sbjct: 238 EMPTSAIIFCRTKAMVDELGEKLLARGYGAELLHGDLSQAMRDRVMKRFREEQVEILVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV N+D+P   E Y+HRIGRTGRAGR G A TLV   + + +  IE+
Sbjct: 298 DVAARGLDIEHVSHVINYDIPLDPEAYVHRIGRTGRAGRSGVAVTLVTPRERRQLRTIER 357

Query: 363 LIEKKVDWL 371
           +    +  L
Sbjct: 358 MTGAPIQRL 366


>gi|224585078|ref|YP_002638877.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224469606|gb|ACN47436.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 626

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|283851662|ref|ZP_06368941.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. FW1012B]
 gi|283572992|gb|EFC20973.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. FW1012B]
          Length = 492

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 147/368 (39%), Positives = 215/368 (58%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    L   +   +   GY  PTPIQ + IP V +  D+ G+AQTGTGKTA+F+LP++
Sbjct: 1   MSFDSFCLHATITENIKRLGYENPTPIQAEAIPHVTEGRDLMGLAQTGTGKTAAFLLPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   ++  R  R LIL PTRELA Q+       G+   L  A++ GG+    Q + L 
Sbjct: 61  HRLMTTKSEKRGVRALILAPTRELAEQIYRAGLDLGRGTRLRAAVIYGGVGMFPQTRALR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++  PGR+LDH N+G +  + +E LV+DEAD M DMGF+P I+ I S +P  RQT
Sbjct: 121 QGVDIIVACPGRLLDHMNQGNVRFDALETLVLDEADHMFDMGFLPDIKRILSALPSERQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +  ++   L +P  + +   +  + T+EH        +++K  LL  LL+
Sbjct: 181 LLFSATMPPAISGLAHETLTDPVTVRIGHMAPLS-TVEHAIYPI--SHTQKAPLLLHLLE 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   ++ I+F   K    NL   L + G     + GN+ QR R   +  F+ G+ Q++V
Sbjct: 238 -EAGKQSVIVFTRTKHRAKNLALQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  VGHV NFD+P+ AE Y HRIGRTGRA   G+A T V  ED+  + AI
Sbjct: 297 ATDIAARGIDVSQVGHVVNFDIPDTAEAYTHRIGRTGRAEHEGQAHTFVTGEDMGMVRAI 356

Query: 361 EKLIEKKV 368
           E  ++K +
Sbjct: 357 ESHMKKPL 364


>gi|50914526|ref|YP_060498.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
 gi|50903600|gb|AAT87315.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
          Length = 539

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 228/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFIEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               K R    + + L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  N---KIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L+++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ +++     T   ++  +V    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 236 VNQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKQMKPL 365


>gi|94992721|ref|YP_600820.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
 gi|94546229|gb|ABF36276.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
          Length = 416

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 144/368 (39%), Positives = 227/368 (61%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               K R    + + L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  N---KIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L+++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ +++     T   ++  +V    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 236 VNQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKV 368
           E L +K++
Sbjct: 355 ENLTKKQM 362


>gi|39546364|ref|NP_462193.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|56415212|ref|YP_152287.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|161616286|ref|YP_001590251.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|162139541|ref|YP_218208.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167552072|ref|ZP_02345825.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167990155|ref|ZP_02571255.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168231889|ref|ZP_02656947.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168237981|ref|ZP_02663039.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168243114|ref|ZP_02668046.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168262709|ref|ZP_02684682.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168819651|ref|ZP_02831651.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194447369|ref|YP_002047310.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194470855|ref|ZP_03076839.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194736232|ref|YP_002116230.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197249912|ref|YP_002148207.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197265213|ref|ZP_03165287.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197364142|ref|YP_002143779.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|204928320|ref|ZP_03219520.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|238910075|ref|ZP_04653912.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|56129469|gb|AAV78975.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161365650|gb|ABX69418.1| hypothetical protein SPAB_04091 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194405673|gb|ACF65892.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194457219|gb|EDX46058.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194711734|gb|ACF90955.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197095619|emb|CAR61187.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197213615|gb|ACH51012.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197243468|gb|EDY26088.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197289140|gb|EDY28509.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204322642|gb|EDZ07839.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205323189|gb|EDZ11028.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205331110|gb|EDZ17874.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205333912|gb|EDZ20676.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205337772|gb|EDZ24536.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205343559|gb|EDZ30323.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205348425|gb|EDZ35056.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|267995476|gb|ACY90361.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|312914306|dbj|BAJ38280.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320087727|emb|CBY97491.1| Cold-shock DEAD box protein A homolog; ATP-dependent RNA helicase
           deaD homolog [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225964|gb|EFX51018.1| Cold-shock DEAD-box protein A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322615285|gb|EFY12206.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618356|gb|EFY15247.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622839|gb|EFY19683.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626839|gb|EFY23636.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631408|gb|EFY28168.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635325|gb|EFY32039.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322643460|gb|EFY40023.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647104|gb|EFY43605.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648907|gb|EFY45352.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655099|gb|EFY51410.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657702|gb|EFY53970.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664198|gb|EFY60396.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667481|gb|EFY63643.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674729|gb|EFY70821.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675638|gb|EFY71711.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682274|gb|EFY78297.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684877|gb|EFY80875.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322716278|gb|EFZ07849.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323191728|gb|EFZ76980.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199035|gb|EFZ84132.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204265|gb|EFZ89274.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207612|gb|EFZ92559.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211335|gb|EFZ96179.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214723|gb|EFZ99472.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323224056|gb|EGA08349.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230295|gb|EGA14414.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233271|gb|EGA17365.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239308|gb|EGA23358.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242441|gb|EGA26467.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246951|gb|EGA30917.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323254116|gb|EGA37936.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255233|gb|EGA39010.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262696|gb|EGA46252.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264006|gb|EGA47514.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269392|gb|EGA52847.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 629

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|56807749|ref|ZP_00365611.1| COG0513: Superfamily II DNA and RNA helicases [Streptococcus
           pyogenes M49 591]
          Length = 385

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 228/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               K R    + + L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  N---KIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L+++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ +++     T   ++  +V    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 236 VNQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKQMKPL 365


>gi|168463497|ref|ZP_02697414.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195633290|gb|EDX51704.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 629

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|284929206|ref|YP_003421728.1| superfamily I DNA/RNA helicaseI [cyanobacterium UCYN-A]
 gi|284809650|gb|ADB95347.1| DNA/RNA helicase, superfamily II [cyanobacterium UCYN-A]
          Length = 477

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 151/369 (40%), Positives = 226/369 (61%), Gaps = 5/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS   V  + + G+  PT IQ K IPL+L+ HDV G +QTGTGKTA++ LP  
Sbjct: 3   ISFENLGLSETRVNKLKELGFENPTEIQEKAIPLMLEGHDVLGQSQTGTGKTAAYSLP-- 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ILEK   +    + LIL PTRELA QVA+  + +     L +  + GG   + Q + LE
Sbjct: 61  -ILEKVDIQDPSVQVLILTPTRELAQQVAEALKDFTVRRRLYILTVYGGQSIDRQIRSLE 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++D   R KL+++++   V+DEAD ML MGFI  ++ I    P +R T
Sbjct: 120 RGVQIVVGTPGRVIDLIERKKLILDSLRWAVLDEADEMLSMGFIDDVKTILKKTPESRST 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM  E++++   FL++P  I V    +    IE         +SK+ AL Q +L+
Sbjct: 180 ACFSATMPREIRELVNQFLKSPVTISVERTQAAPTRIEQNIYMVPRGWSKRKAL-QPVLE 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D  ++ IIF   K+   +L   L++ G  V   HGN+ Q  R +++  F++G I+L+V
Sbjct: 239 IEDP-ESAIIFVRTKQTASDLTTRLQEIGHCVDEYHGNLSQSQRERLVHRFRDGRIKLVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+ +E YIHRIGRTGRAG+ GKA ++V   D + I  I
Sbjct: 298 ATDIAARGLDVEGLSHVINYDLPDNSETYIHRIGRTGRAGKTGKAISIVESADRRMIRQI 357

Query: 361 EKLIEKKVD 369
           E+ + +K+D
Sbjct: 358 ERKLRQKID 366


>gi|255020706|ref|ZP_05292767.1| Cold-shock DEAD-box protein A [Acidithiobacillus caldus ATCC 51756]
 gi|254969860|gb|EET27361.1| Cold-shock DEAD-box protein A [Acidithiobacillus caldus ATCC 51756]
          Length = 615

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 144/363 (39%), Positives = 221/363 (60%), Gaps = 7/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+D  L+  +  AV + GY +P+PIQ ++IP +L   DV G+AQTGTGKTA+F LP+L
Sbjct: 10  LSFSDFALAEPLQRAVREIGYEQPSPIQAQSIPPLLAGRDVIGLAQTGTGKTAAFALPLL 69

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           + ++     +R P+ L+L PTRELA QVA+  + Y K      V  + GG     Q K+L
Sbjct: 70  SRVDLS---LRFPQILVLAPTRELAIQVAEAMQSYAKFLPGFHVLPIYGGQSMGLQLKQL 126

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGRI DH  R  L ++ ++ +V+DEAD ML MGFI  ++ I    P  RQ
Sbjct: 127 QRGVQVVVGTPGRIQDHLRRETLKLDRLQAVVLDEADEMLRMGFIDAVEEILKHTPTQRQ 186

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM + +++++  +L++P  I + + +ST   I   +      +  K   L ++L
Sbjct: 187 VALFSATMPEAIRRIARTYLRDPLEIRIKSTTSTVAAIRQRYWLVSGTH--KLDALTRIL 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +D+    IIF   K   V L   LE +G++  A++G++ Q  R + +   K G++ ++
Sbjct: 245 EVEDS-NAWIIFVRTKTATVELAERLEARGYACGALNGDMTQAMREQTIERVKSGSLDIV 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+PN  E Y+HRIGRTGRAGR G+A   VA  +   + A
Sbjct: 304 VATDVAARGLDVERITHVINYDIPNDTEAYVHRIGRTGRAGRKGEAILFVAPRERYLLKA 363

Query: 360 IEK 362
           IE+
Sbjct: 364 IER 366


>gi|163843319|ref|YP_001627723.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis
           ATCC 23445]
 gi|163674042|gb|ABY38153.1| DEAD/DEAH box helicase domain protein [Brucella suis ATCC 23445]
          Length = 535

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 155/386 (40%), Positives = 231/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ++ IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQMQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I    V       +K  LL  +L 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 326

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 327 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470


>gi|24216134|ref|NP_713615.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str.
           56601]
 gi|45656634|ref|YP_000720.1| ATP-dependent RNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24197378|gb|AAN50633.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str.
           56601]
 gi|45599869|gb|AAS69357.1| ATP-dependent RNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 540

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 161/445 (36%), Positives = 257/445 (57%), Gaps = 24/445 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L + PK++ A+ + GY + TPIQ K+IP  L+  D+ G+AQTGTGKT +F++P++
Sbjct: 1   MKFEELSIHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVI 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL-LIGGIPFEAQNKK 118
             IL KG   ++    L+L PTREL  Q+A+  +K  K+     ++ +IGG  +++QNK 
Sbjct: 61  HNILTKG---IQGIAALVLAPTRELTMQIAEEAKKLLKHSEGIRSVPIIGGTDYKSQNKD 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE    +++ TPGR++D    G + ++N+E  V+DEADRMLDMGFI  I+ +       +
Sbjct: 118 LEGLNGIIVATPGRLIDMIKSGSIDISNVEFFVLDEADRMLDMGFIQDIRWLLHKCKNRK 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLL+SAT++ E+ +++  FL  P  I++N      E I+   V  +    +K   +  L
Sbjct: 178 QTLLYSATLSVEVMRLAYRFLNEPVEIQINPEKIITERIDQKIV--HLGREEKIPYMTNL 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +      GIIF N K N+  + ++L K G  V  I   +DQ+ R+++L +FK G  + 
Sbjct: 236 IINSKEEGQGIIFTNYKANIPKIVYTLRKYGVPVTGISSELDQKKRLRLLRDFKSGKYRY 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ ++  V+N+D+P   ENY+HRIGRT RAGR GKA    ++ D   ++
Sbjct: 296 MVATDVASRGIDVENIDIVYNYDLPQDTENYVHRIGRTARAGRKGKAIGFCSESDYVELE 355

Query: 359 AIEKLIEKKVDWLN----------GDLSSL----NPPLEKIDIAQHNHAR--KNNPIPQK 402
            IEK +++K++ L           GD  S     +   EK    + N  R   N+  P K
Sbjct: 356 KIEKYLKQKIEILEVNEEYIQFPAGDFQSFIGGDSYDREKETHFKQNGKRPHDNDRAPHK 415

Query: 403 STGFDRRKKNYSSQKSHIPLKESEK 427
                +R K ++S  +H   K+S K
Sbjct: 416 HDRNRKRDKRHTSH-THSTAKDSHK 439


>gi|213964614|ref|ZP_03392814.1| cold-shock deAd box protein a [Corynebacterium amycolatum SK46]
 gi|213952807|gb|EEB64189.1| cold-shock deAd box protein a [Corynebacterium amycolatum SK46]
          Length = 702

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 142/361 (39%), Positives = 221/361 (61%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L   +V AV   G+  P+PIQ  TIP ++   DV G+AQTGTGKTA+F LP+L  
Sbjct: 63  FDELELPDDIVNAVRKVGFETPSPIQAATIPTLMSGRDVVGLAQTGTGKTAAFALPILAR 122

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           +++    VR P+ L+L PTRELA QVAD+F+ +  +   + V  + GG  +  Q   L R
Sbjct: 123 IDRS---VRAPQALVLAPTRELALQVADSFQSFADHLGKIQVLPIYGGQSYGVQLSGLRR 179

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  +G L ++++  LV+DEAD ML MGF   ++ I +  P  +Q  
Sbjct: 180 GAQIIVGTPGRVIDHLEKGSLDISDLRFLVLDEADEMLQMGFQEDVERILADTPDDKQVA 239

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++S+ +L  P+ I V + + TA+ I   F+     +  K   L ++L+ 
Sbjct: 240 LFSATMPASIRRLSKQYLTEPEEITVKSQTRTADNIRQRFL--MVSHRNKLDALTRILEV 297

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++  +  I+F   K     L   L  +GFS  AI+G+I Q  R + +   K+G + ++VA
Sbjct: 298 EE-FEAMIMFVRTKHETEELAEKLRARGFSAAAINGDIPQTLRERTIDQLKDGRLDILVA 356

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 357 TDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGEALLFVTPREGRLLRSIE 416

Query: 362 K 362
           +
Sbjct: 417 R 417


>gi|313500721|gb|ADR62087.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida BIRD-1]
          Length = 443

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 151/368 (41%), Positives = 222/368 (60%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+FA LGL   ++  +    Y  PTP+Q K IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               LE  +      R L+L PTRELA QV +N  +Y +N  L+   + GG+    Q  +
Sbjct: 61  QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+LD F +  +  N ++ LV+DEADRMLD+GF   +Q++ + +P  R
Sbjct: 121 LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D+++ ++   L +P  IEV+  ++TA +++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPV--DKKRKADLFCHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ Q   K  ++F   +  V  L   L  +G +   IHG+  Q +R + L +FK   +Q+
Sbjct: 239 LRKQ-RWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLA 357

Query: 359 AIEKLIEK 366
           AIE L  +
Sbjct: 358 AIEVLTRQ 365


>gi|212636948|ref|YP_002313473.1| ATP-dependent RNA helicase SrmB [Shewanella piezotolerans WP3]
 gi|212558432|gb|ACJ30886.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 410

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 144/368 (39%), Positives = 228/368 (61%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L P ++ ++   G+ KPT IQ +TIP+ +++ D+   A TGTGKTASF+LP L
Sbjct: 4   MLFEDLQLDPCLLESLKAMGHNKPTTIQQQTIPVAMEQRDILARAPTGTGKTASFLLPAL 63

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I++  R      R L+L PTRELA+Q+         + +L ++++ GG+P+  Q + L
Sbjct: 64  QHIIDFPRRFGGQARVLVLTPTRELASQIHRYASHLATDLDLDISIITGGVPYAPQEEAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++  D+L+ TPGR++++ ++G      +E+LVIDEADRMLDMGF   ++ I       +Q
Sbjct: 124 KKNVDILVATPGRLMEYLDKGLFNAEEVEVLVIDEADRMLDMGFSAVVETIAIESVGRKQ 183

Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           T+LFSAT+   ++ + S   L NP ++E   P S    I H +V        K ALL  +
Sbjct: 184 TMLFSATLEGSDVGRFSHQLLSNPVKLEAEAPRSEKAKI-HQWVHIADDREHKFALLYAI 242

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ Q+ ++  I+F   ++ V +L   L+KQG +   + G+++Q++R + L  F +G + +
Sbjct: 243 LQ-QEEVERAIVFVKTREAVASLDGLLQKQGITCSFMRGDMEQKARFQALGRFTKGEVNV 301

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+ D+ HV NFD+P  A+ Y+HRIGRTGRAG  G A +LV   DI+ + 
Sbjct: 302 LLATDVAARGIDVDDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDIRVVG 361

Query: 359 AIEKLIEK 366
            IE+ IE+
Sbjct: 362 KIERYIEQ 369


>gi|213579752|ref|ZP_03361578.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 556

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|331701930|ref|YP_004398889.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus
           buchneri NRRL B-30929]
 gi|329129273|gb|AEB73826.1| DEAD/DEAH box helicase domain protein [Lactobacillus buchneri NRRL
           B-30929]
          Length = 506

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 153/412 (37%), Positives = 242/412 (58%), Gaps = 14/412 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+ ++G+ + TPIQ +TIP+VL+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLSDHLLTAINNSGFEEATPIQGETIPMVLKGEDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   + GK+    V ++ GG     Q   L+
Sbjct: 61  QKIDFDNPNVQ---ALIISPTRELAIQTQEEIYRLGKDEKAKVQVVYGGADIRRQINALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILDH  R  L + +++ LV+DEAD ML+MGF+  I++I    P  RQT
Sbjct: 118 GHPQIVVGTPGRILDHIRRHTLKLEHVKTLVLDEADEMLNMGFLDDIEDIIKQTPKERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  ++++V   F+++P ++ +     T + I+  +V    +  +K   + +   
Sbjct: 178 LLFSATMPAQIKRVGVQFMRDPHQVTIKAKELTTDLIDQYYVR--VKEYEKFDTMTRFFD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD  +  I+FC  K+ V  +   L+ +G+    +HG++ Q  R +I+  FK   I ++V
Sbjct: 236 VQDP-EVTIVFCRTKRRVDEVSKGLQARGYKAAGLHGDLTQARRTQIMQEFKAAKIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  V HV+N+D+P   + Y+HR+GRTGRAG+HG + T     ++ ++  I
Sbjct: 295 ATDVAARGIDISGVTHVYNYDIPQDPDGYVHRVGRTGRAGKHGVSITFATPNEMDYLREI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPP-LEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           EKL   KV  L      L PP +++  + Q N A  +     K T  D+ +K
Sbjct: 355 EKLT--KVRML-----PLKPPTIQEAFVGQLNSAESDIADLIKKTNTDKYEK 399


>gi|254482185|ref|ZP_05095426.1| DbpA RNA binding domain family protein [marine gamma
           proteobacterium HTCC2148]
 gi|214037510|gb|EEB78176.1| DbpA RNA binding domain family protein [marine gamma
           proteobacterium HTCC2148]
          Length = 618

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 145/361 (40%), Positives = 214/361 (59%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L LS  +  A+ D GY  P+ IQ  TIP +++  DV G AQTGTGKTA+F LP+L  
Sbjct: 10  FAELALSEPLQKALADVGYETPSAIQAATIPALIEGRDVLGQAQTGTGKTAAFALPILAQ 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+   A  + P+ L+L PTRELA QVA+ F+KY +   +  V  + GG  +  Q ++L+R
Sbjct: 70  LQ---ASSKKPQVLVLAPTRELAIQVAEAFQKYARYLKDFHVVPIYGGADYRGQLRQLQR 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L ++ +  LV+DEAD ML MGFI  ++ I    P  RQ  
Sbjct: 127 GVQVVVGTPGRVMDHMRRGSLDLSALRTLVLDEADEMLRMGFIDDVEWILEQTPDDRQIA 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   + ++++  L NP  + +   + T ++I          +  K   L ++L+ 
Sbjct: 187 LFSATMPTAIARIAKQHLNNPVHVAIEVQTMTNKSIRQRVWMMAGVH--KLDALTRILEV 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I+F   +     +   L  +G+S  A++G+I Q+ R   + N K GTI ++VA
Sbjct: 245 ED-FDGVIVFVRTRIATAEIAEKLAARGYSAAALNGDIPQKQREATIDNLKRGTIDILVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E Y+HRIGRTGRAGR G A    A  + + + AIE
Sbjct: 304 TDVAARGLDVERISHVINYDIPYDVEAYVHRIGRTGRAGREGDAILFAANRERRLLRAIE 363

Query: 362 K 362
           K
Sbjct: 364 K 364


>gi|17987217|ref|NP_539851.1| ATP-dependent RNA helicase RHLE [Brucella melitensis bv. 1 str.
           16M]
 gi|225852555|ref|YP_002732788.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis ATCC 23457]
 gi|256044711|ref|ZP_05447615.1| DEAD/DEAH box helicase domain protein [Brucella melitensis bv. 1
           str. Rev.1]
 gi|17982889|gb|AAL52115.1| ATP-dependent RNA helicase rhle [Brucella melitensis bv. 1 str.
           16M]
 gi|225640920|gb|ACO00834.1| DEAD/DEAH box helicase domain protein [Brucella melitensis ATCC
           23457]
          Length = 535

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 155/386 (40%), Positives = 230/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I    V       +K  LL  +L 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGATASEITQ--VVHPVPTKEKRRLLSAMLT 326

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 327 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470


>gi|256113603|ref|ZP_05454423.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
          Length = 535

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 155/386 (40%), Positives = 230/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I    V       +K  LL  +L 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 326

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 327 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470


>gi|116073020|ref|ZP_01470282.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
 gi|116068325|gb|EAU74077.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
          Length = 599

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 145/369 (39%), Positives = 225/369 (60%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G S  +V  + + GY +P+PIQ    P ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 45  FAGFGFSEALVKTLTEKGYKEPSPIQAAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 104

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+K   +   P+ L+L PTRELA QVA++F+ Y   + +L V  + GG  F +Q   L+R
Sbjct: 105 LQKDATK---PQALVLAPTRELAMQVAESFKAYSAGHPHLNVLAIYGGSDFRSQIHALKR 161

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR++DH  +G L    +  LV+DEAD ML MGFI  ++ I   +P  RQ +
Sbjct: 162 GVDVVVGTPGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQVV 221

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQ 240
           LFSATM  E++++S+ +L+ P  I + T    A  I + C      Q S K   L ++L+
Sbjct: 222 LFSATMPSEIRRLSKRYLREPAEITIKTKEKEARRIRQRCITL---QNSHKLEALNRVLE 278

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  T +  IIF   K   +N+  SLE  G  V  ++G++ Q  R + +   ++GT+ ++V
Sbjct: 279 AV-TGEGVIIFARTKAITLNVSESLEAAGHDVAVLNGDVPQNQRERTVERLRKGTVNILV 337

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +G V N+D+P  +E Y+HRIGRTGRAGR G+A   V   + + ++ +
Sbjct: 338 ATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFVTPRERRFVNNL 397

Query: 361 EKLIEKKVD 369
           E+ + ++++
Sbjct: 398 ERAVGQEIE 406


>gi|226940616|ref|YP_002795690.1| ATP-dependent RNA helicase protein [Laribacter hongkongensis HLHK9]
 gi|226715543|gb|ACO74681.1| Putative ATP-dependent RNA helicase protein [Laribacter
           hongkongensis HLHK9]
          Length = 520

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 153/384 (39%), Positives = 228/384 (59%), Gaps = 10/384 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA LGL  ++V A+       PTP+Q + +PL+L   D+   AQTGTGKTA+F+LP L+ 
Sbjct: 6   FAALGLDARLVHALEQHNITTPTPVQAEALPLLLSGRDLMASAQTGTGKTAAFLLPALSR 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLE 120
           +L +  AR R PR L+L PTREL  QVA   +++  K   + VA +IGG  F  QN+ L 
Sbjct: 66  LLVEPVARSRGPRILVLAPTRELVQQVAKAAQEFSTKIPRVNVASVIGGTSFRTQNQMLT 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R  +V++ TPGR++D    G++  + +E+LV+DEADRMLDMGF   +  I S +P  RQT
Sbjct: 126 RPIEVMVATPGRLMDQMRSGRIDFSRLEMLVLDEADRMLDMGFSEDVMEIASQLPKARQT 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQL 238
             F+ATMT  +   ++  L  P +IE+   ++  E IE    FV        K  L++ +
Sbjct: 186 AFFTATMTRRVLDFADELLTEPAKIEIAAQTAKHENIEQQAIFVD---DIDHKRRLVRHI 242

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L SQ  +K  I+F   K++   L   L   G    A+HG++ QR R + L+  + G  ++
Sbjct: 243 L-SQPDVKQAIVFVATKRDCDTLADELIVDGIRADALHGDMQQRDRTRTLTRLRSGQTEV 301

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + HV NFD+P  AE+Y+HR+GRTGRAG  G A +LV ++D   + 
Sbjct: 302 LVATDVAARGIDVAGISHVINFDLPRFAEDYVHRVGRTGRAGATGTAVSLVGRQDAFPLK 361

Query: 359 AIEKLIEKK--VDWLNGDLSSLNP 380
            IE+   +K  V  + G ++   P
Sbjct: 362 KIERFTGQKLIVTEIEGMIARFKP 385


>gi|194446047|ref|YP_002042538.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194404710|gb|ACF64932.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 629

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|322412126|gb|EFY03034.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 539

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 228/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               K R    + + L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  N---KIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L+++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ +++     T   ++  +V    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 236 VNQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKQMKPL 365


>gi|254719124|ref|ZP_05180935.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
          Length = 535

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 155/386 (40%), Positives = 230/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I    V       +K  LL  +L 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 326

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 327 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470


>gi|77461141|ref|YP_350648.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1]
 gi|77385144|gb|ABA76657.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 446

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 153/365 (41%), Positives = 218/365 (59%), Gaps = 5/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ ++   GY  PTP+Q + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFATLGLIEPLLRSLEKLGYQTPTPVQAQAIPVVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L  E  +      R LIL PTRELA QV +   +Y +N  L    + GG+    Q  K
Sbjct: 61  QLLAMEGPKVTANSVRALILVPTRELAEQVHEAVRQYAENLPLRTYAVYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+L+ TPGR+LD F +  L  N ++ LV+DEADRMLD+GF   + NI   +P  R
Sbjct: 121 LRGGVDLLVATPGRLLDLFRQNALKFNQLQTLVLDEADRMLDLGFSEELANIYRALPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D+++ ++   L +P+ IEV+  +  A T++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDDIRLLAGQMLNDPQSIEVSPRNVAANTVKQWVVTV--DKKRKPELFVHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ ++  K  ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +Q+
Sbjct: 239 MR-KNKWKQVLVFAKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKLSEVQI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V NFD+P  AE+YIHRIGRTGRAG  G+A +LV  +++  + 
Sbjct: 298 LVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADEVNMLS 357

Query: 359 AIEKL 363
           AIE L
Sbjct: 358 AIEML 362


>gi|237785892|ref|YP_002906597.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758804|gb|ACR18054.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 823

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 139/360 (38%), Positives = 225/360 (62%), Gaps = 11/360 (3%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
           AV   G+  P+PIQ  TIP++ Q  DV G+AQTGTGKTA+F LP+L+ L++ +   + P+
Sbjct: 168 AVKKVGFETPSPIQAATIPILAQGRDVVGLAQTGTGKTAAFALPILSRLDRSQ---KKPQ 224

Query: 75  TLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
            L+L PTRELA QVAD F+++  +   + V  + GG  +  Q   L RGA +++ TPGR+
Sbjct: 225 ALVLSPTRELALQVADAFQEFADHLGGVHVLPIYGGQSYGIQLSGLRRGAHIVVGTPGRV 284

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193
           +DH  RG L ++ ++ LV+DEAD ML+MGF   ++ I +  P  +QT LFSATM   +++
Sbjct: 285 IDHLERGSLDLSELKYLVLDEADEMLNMGFQEDVERILADTPEHKQTALFSATMPASIRR 344

Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ--DTMKNGIIF 251
           +S+ +L++P+ + + +   TA+ I   ++     Y  K   L ++L+    D M   I+F
Sbjct: 345 LSKQYLEDPREVTIKSQQRTADNIHQQYLLVNHHY--KLDALTRILEVTEFDAM---IMF 399

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
              K+N   L   L  +GFS  AI+G++ Q  R + +   ++G + ++VA+D+AARGLD+
Sbjct: 400 ARTKQNTEELAEKLRARGFSAAAINGDMAQNQRERTVDQLRDGRLDILVATDVAARGLDV 459

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
             + HV N+D+P+  E+Y+HRIGRTGRAGR G+A   V   + + + +IE+  +  ++ +
Sbjct: 460 ERISHVVNYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRLLRSIERATKSSIEEM 519


>gi|268680741|ref|YP_003305172.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618772|gb|ACZ13137.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 583

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 230/369 (62%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL   ++ A+ +AG+ +P+P+Q + IPLVLQ HD+   AQTGTGKTA+F LP +++
Sbjct: 4   FESFGLHQDILKAINEAGFTEPSPVQAEAIPLVLQGHDIVAQAQTGTGKTAAFGLPTMSM 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  + RV++   L++ PTRELA QV+D     G+   +    + GG  +  Q   +E+G
Sbjct: 64  IDANQNRVQL---LVITPTRELATQVSDELYSLGRFCGIKTVTIYGGSSYSRQIGLIEKG 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A V++ TPGR+LD    G+L     +++V+DEAD MLDMGF+  I+ I + +P  RQTLL
Sbjct: 121 ASVIVATPGRMLDLLKNGRLPGFAPKMVVLDEADEMLDMGFLEDIEEIFTYLPKERQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQLLQ 240
           FSATM + +++++   L  PK + + TP   +T E IE  +     +Y +  A+++ LL 
Sbjct: 181 FSATMPEPIKRLASKILHEPKFVSI-TPKDHTTNEDIEQLYYVI-NEYERDDAMIR-LLD 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +  K+ I+FC  KK V  L   L   G++   +HG+++Q  R  ++  F+   I+++V
Sbjct: 238 ALEPEKS-IVFCRTKKEVDRLSTQLMAVGYAAKGLHGDMEQNQRESVIKAFRSSQIEILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL++ D+ HVFN+ +P   E+Y+HRIGRTGRAG+ G A TLV   +   +  I
Sbjct: 297 ATDVAARGLNVADISHVFNYHMPFDPESYVHRIGRTGRAGKKGTAITLVTPIEFHSMQRI 356

Query: 361 EKLIEKKVD 369
            K +  K++
Sbjct: 357 GKKVGSKIE 365


>gi|78189083|ref|YP_379421.1| DEAD/DEAH box helicase-like [Chlorobium chlorochromatii CaD3]
 gi|78171282|gb|ABB28378.1| ATP-dependent RNA helicase CsdA [Chlorobium chlorochromatii CaD3]
          Length = 640

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 158/427 (37%), Positives = 246/427 (57%), Gaps = 21/427 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L L   ++ A+ + GY  PTPIQ +TIP +L   DV G AQTGTGKTA+F LP+L 
Sbjct: 11  NFFSLQLPELLMKALEEVGYESPTPIQAQTIPFLLAGRDVLGQAQTGTGKTAAFALPILA 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++  +A    P+ L+L PTRELA QVA+ F++Y +      V  + GG  +  Q + L 
Sbjct: 71  SIDIQQAE---PQALVLAPTRELAIQVAEAFQRYAEYLKGFHVVPIYGGQDYGIQFRMLR 127

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG L + +++ LV+DEAD ML MGFI  ++ I    P  RQ 
Sbjct: 128 RGVQVVVGTPGRVMDHIRRGSLNLTHLKTLVLDEADEMLRMGFIDDVEWILEQTPAGRQV 187

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++++++ +L  P  + + T ++T +TI   +       S K  +L ++L+
Sbjct: 188 ALFSATMPPPIRRIAQKYLDQPAEVTIQTKTTTVDTIRQRYWVVGG--SHKLDILTRILE 245

Query: 241 SQ--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +  D M   IIF   K   + L   L+ +G++  A++G++ Q  R + +   K G I +
Sbjct: 246 VEPFDGM---IIFSRTKTMTIELAEKLQARGYAAAALNGDMPQNQRERTIEQLKNGNINI 302

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   VA  +   + 
Sbjct: 303 VVATDVAARGLDVERISHVVNYDIPSDTESYVHRIGRTGRAGRAGDAILFVAPREKNMLY 362

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKID---IAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           AIEK    +++ +      + P  E I+   IA+ N  R ++ I  +  GF  R      
Sbjct: 363 AIEKATRSRIEQM------VLPTTEVINNKRIAKFNQ-RISDTIAAEDLGFFTRMIEQYC 415

Query: 416 QKSHIPL 422
            + ++P+
Sbjct: 416 NEHNVPM 422


>gi|229823669|ref|ZP_04449738.1| hypothetical protein GCWU000282_00970 [Catonella morbi ATCC 51271]
 gi|229786906|gb|EEP23020.1| hypothetical protein GCWU000282_00970 [Catonella morbi ATCC 51271]
          Length = 518

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 152/409 (37%), Positives = 241/409 (58%), Gaps = 20/409 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ ++ D G+ +PTPIQ + +P+ L+  D+ G AQTGTGKTA+F LPML
Sbjct: 1   MKFTELNLIQPLLDSLADMGFEEPTPIQQQAVPVALEGQDLIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+K ++ ++    L++ PTRELA QV +   + GK     + ++ GG     Q + ++
Sbjct: 61  NKLDKNQSAIQ---GLVVAPTRELAIQVQEELYRLGKYQRARIYVVYGGSSIGKQIEWIK 117

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           R    +++ TPGRILD   R  L + +++ LV+DEAD ML+MGFI  ++ I +  P +RQ
Sbjct: 118 RNQPQIVVGTPGRILDLMRRKALSLKHLKTLVLDEADEMLNMGFIEDVKEIVATTPASRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E++ +++ FL+ P  +++     TA+ IE  F+    +  +K  +  +LL
Sbjct: 178 TLLFSATMPPEIRSLADQFLKEPAHVKIEAKQMTADLIEQFFIK--CRDDEKFDIFTRLL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      I+FC  KK V  +   L  +G++   IHG+I Q+ R  +++ F++G ++L+
Sbjct: 236 DVQ-MPTQAIVFCRTKKRVDEVARGLSLRGYNAELIHGDIPQQKRTSVINAFRQGQVELL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG  G + T V   ++ ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDISQDPESYVHRIGRTGRAGNEGMSITFVTPAEMSYLRV 354

Query: 360 IEKLIEKKVDWLN---------GDLSS----LNPPLEKIDIAQHNHARK 395
           IE L  K++  +          G + S    LN  LE  D  +H +  K
Sbjct: 355 IEDLTRKRMQPMKPPTLKEAQAGQVQSLIDQLNETLEAGDADEHRNTAK 403


>gi|319405915|emb|CBI79547.1| ATP-dependent RNA helicase [Bartonella sp. AR 15-3]
          Length = 430

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 153/370 (41%), Positives = 230/370 (62%), Gaps = 8/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA+LGLS  +V  +  AG  KP  IQ + IP++L+ HD+ GIAQTG+GKT +F LP+L  
Sbjct: 9   FAELGLSSLLVKNLFIAGMHKPKLIQERAIPVMLKGHDILGIAQTGSGKTLAFSLPILNR 68

Query: 62  ILEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL  G  R  +  R LIL PTRELA Q+ +      K  +L+  L++GG+    Q +++ 
Sbjct: 69  ILALGDKRHPKTARALILVPTRELAIQIEEAISAVAKGTHLSTCLILGGMSRLTQIRRMA 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR++D      + ++     ++DEADRMLDMGFI  ++ I + +    QT
Sbjct: 129 KGVDILVATPGRLIDLIRSKYVDLSKSRFFILDEADRMLDMGFINDVRQIANFLHKKCQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ E+  +++N L+ P +IEV +  +TA  I           S+K ++L +LL 
Sbjct: 189 ALFSATMSKEVNVLADNLLKKPVKIEVVSQGTTAAEITQVLYCV--STSEKKSVLGKLL- 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   + + I+F   K    ++  SL K G+SV  IHGN  Q +R + L +F+EG ++++V
Sbjct: 246 TNPALASVIVFIRTKHGADSVARSLAKTGYSVATIHGNKSQNARQRALKDFREGLVRVLV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID-- 358
           A+D+AARG+DIP + HV N+D+P+ AE+Y+HRIGRTGR    G A TL   E I+ +   
Sbjct: 306 ATDIAARGIDIPRISHVINYDLPDNAESYVHRIGRTGRNSASGDAITLF-DEKIEQVRLC 364

Query: 359 AIEKLIEKKV 368
           AIE+LI  K+
Sbjct: 365 AIERLIRMKI 374


>gi|212637255|ref|YP_002313780.1| DEAD box helicase [Shewanella piezotolerans WP3]
 gi|212558739|gb|ACJ31193.1| Helicase:DbpA, RNA-binding:DEAD/DEAH box helicase [Shewanella
           piezotolerans WP3]
          Length = 611

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 229/371 (61%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL+  ++ A+ + GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L  
Sbjct: 8   FRELGLAEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLNS 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++        P+ L+L PTRELA QVA+ F  Y K    L V  + GG     Q   L R
Sbjct: 68  IDPN---TNSPQILVLAPTRELAVQVAEAFGSYAKFMKGLHVLPIYGGQSMHQQLNALRR 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH  RG L + +++ +V+DEAD ML MGFI  I+ I    P  RQ  
Sbjct: 125 GPQIIVGTPGRVMDHMRRGTLKLESLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQLA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +++++V+  +L  P  +++   ++T ETIE  FV   +Q++K  AL++ +L+ 
Sbjct: 185 LFSATMPEQIKRVANKYLSEPVHVKIAATTTTVETIEQRFVQV-SQHNKLEALVR-VLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T +  IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++A
Sbjct: 243 EKT-EGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIIIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +GHV N+D+P   E Y+HRIGRTGRAGR G A   V   +++ +  IE
Sbjct: 302 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIE 361

Query: 362 KLIEKKVDWLN 372
           +  + ++  ++
Sbjct: 362 RATKSRISPMD 372


>gi|94501919|ref|ZP_01308429.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
 gi|94425972|gb|EAT10970.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
          Length = 614

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 148/368 (40%), Positives = 224/368 (60%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   ++ A+ + GY +P+PIQ ++IP +L+  DV G+AQTGTGKTA+F LP+L  
Sbjct: 8   FASLGLPFNLLRAIEEQGYEQPSPIQEQSIPHLLEGKDVLGLAQTGTGKTAAFTLPLLA- 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
             + +  VR P+ L+L PTRELA QVA   E Y K+  N+ VA + GG  F +Q + L++
Sbjct: 67  --RTQNEVREPQVLVLAPTRELAQQVAMAVESYSKHESNVKVASIYGGSDFGSQFRALKQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G   ++ TPGR++DH  RG L +  I  +V+DEAD ML MGFI  +  +   VP  RQ  
Sbjct: 125 GPQWVVGTPGRVMDHIRRGTLKLEGIRAVVLDEADEMLRMGFIDDVDWVLDQVPEKRQIA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  +++ V+E  L+ P  I + + ++T E+IE  +        K  ALL+    S
Sbjct: 185 LFSATMPKQIKAVAEKHLREPTEIRIKSKTATNESIEQKYWLVKG-VDKNQALLRICETS 243

Query: 242 Q-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D M   ++F   K+    +   +   G    A++G++ Q  R + +   K+G + ++V
Sbjct: 244 EFDAM---MVFVRTKQATEEVADYMRSHGLRCEALNGDVAQAQRERAVDRLKKGQVDMLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISHVVNYDIPYDAESYVHRIGRTGRAGRSGEAILFVRPRERRMLSTI 360

Query: 361 EKLIEKKV 368
           E++  KK+
Sbjct: 361 ERVTRKKI 368


>gi|319778451|ref|YP_004129364.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
 gi|317108475|gb|ADU91221.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
          Length = 442

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 154/376 (40%), Positives = 225/376 (59%), Gaps = 8/376 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D G   K++  +   GY   TPIQ  +   +L+  D+ G AQTGTGKTA+F LP+L 
Sbjct: 5   NFKDFGFHSKILENISKTGYEYATPIQALSFEPILEGRDIMGAAQTGTGKTAAFTLPILN 64

Query: 62  IL----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L        +  + P R L+L PTRELA Q++ N   Y     L  +L+ GG+   +Q 
Sbjct: 65  RLIPKANYSTSPAKHPVRMLVLTPTRELAEQISKNVNLYSDGLPLKCSLIYGGVDINSQK 124

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++L RGAD++I TPGR+LDH  +  + +  +E LV+DEADRMLDMGF+P +  I S +P 
Sbjct: 125 QELMRGADIVIATPGRLLDHIEQRTVNLTQVEFLVLDEADRMLDMGFMPDLLRILSNLPK 184

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           +RQ+LL+SAT ++ ++ +++ FL NP  I V + +STA TI+   V + ++  K  AL+ 
Sbjct: 185 SRQSLLYSATFSENIRSLAQKFLNNPVEITVASNNSTASTIKQE-VYSVSESDKNAALVY 243

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L  +     N IIF N+K    NL   L     +V ++HG+  Q  R K L  FK    
Sbjct: 244 IL--TSRAFNNVIIFSNRKVTCKNLERLLNNYDLAVQSLHGDKSQLERTKALDLFKSSKC 301

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLDI DV  V N+++P  +E+Y+HRIGRTGRAG+ G A +L + E+ K 
Sbjct: 302 NILVATDVAARGLDISDVDAVINYELPPTSEDYVHRIGRTGRAGKKGIAISLCSSEEGKS 361

Query: 357 IDAIEKLIEKKVDWLN 372
           +  IE L   K   L+
Sbjct: 362 LSEIETLTGLKFQKLS 377


>gi|205354184|ref|YP_002227985.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205273965|emb|CAR38970.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326629305|gb|EGE35648.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 618

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|62289973|ref|YP_221766.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 1 str.
           9-941]
 gi|82699901|ref|YP_414475.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308]
 gi|189024215|ref|YP_001934983.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|254689280|ref|ZP_05152534.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 6 str. 870]
 gi|254693764|ref|ZP_05155592.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 3 str. Tulya]
 gi|254697417|ref|ZP_05159245.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254730315|ref|ZP_05188893.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 4 str. 292]
 gi|256257530|ref|ZP_05463066.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 9 str. C68]
 gi|297248372|ref|ZP_06932090.1| ATP-dependent helicase [Brucella abortus bv. 5 str. B3196]
 gi|62196105|gb|AAX74405.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82616002|emb|CAJ11028.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Brucella melitensis biovar Abortus 2308]
 gi|189019787|gb|ACD72509.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|297175541|gb|EFH34888.1| ATP-dependent helicase [Brucella abortus bv. 5 str. B3196]
          Length = 531

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 155/386 (40%), Positives = 230/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I    V       +K  LL  +L 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 326

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 327 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470


>gi|170719840|ref|YP_001747528.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida W619]
 gi|169757843|gb|ACA71159.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 439

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 151/370 (40%), Positives = 222/370 (60%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+FA LGL   ++  +    Y  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MNFAKLGLIEPLLRTLQQLDYTTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               LE  +      R L+L PTRELA QV +N  +Y +N  L+   + GG+    Q  +
Sbjct: 61  QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+LD F +  +  N ++ LV+DEADRMLD+GF   +Q++ + +P  R
Sbjct: 121 LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D+++ ++   L +P  IEV+  ++ A T++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNAAATTVKQWLVPV--DKKRKVDLFCHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ Q   K  ++F   +  V  L   L  +G +   IHG+  Q +R + L +FK   IQ+
Sbjct: 239 LRKQ-RWKQVLVFAKTRNGVDQLVERLLGEGVNADGIHGDRPQATRQRALDSFKAREIQV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQQLA 357

Query: 359 AIEKLIEKKV 368
            IE LI + +
Sbjct: 358 TIETLIRQTL 367


>gi|62129424|gb|AAX67127.1| cysteine sulfinate desulfinase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
          Length = 651

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 30  FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 90  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 147 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 207 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 265 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 324 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 383

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 384 RTMKLTIPEVELPNAEL 400


>gi|256369477|ref|YP_003106985.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
 gi|255999637|gb|ACU48036.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
          Length = 535

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 155/386 (40%), Positives = 230/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I    V       +K  LL  +L 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 326

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 327 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470


>gi|207858530|ref|YP_002245181.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206710333|emb|CAR34691.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
          Length = 629

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|148560232|ref|YP_001258986.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840]
 gi|161619002|ref|YP_001592889.1| DEAD/DEAH box helicase domain-containing protein [Brucella canis
           ATCC 23365]
 gi|254701799|ref|ZP_05163627.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|256061140|ref|ZP_05451294.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|148371489|gb|ABQ61468.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis
           ATCC 25840]
 gi|161335813|gb|ABX62118.1| DEAD/DEAH box helicase domain protein [Brucella canis ATCC 23365]
          Length = 535

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 155/386 (40%), Positives = 230/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I    V       +K  LL  +L 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 326

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 327 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470


>gi|189485761|ref|YP_001956702.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287720|dbj|BAG14241.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 543

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 149/365 (40%), Positives = 231/365 (63%), Gaps = 11/365 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L LS +++ AV D G+ + TPIQ  +IP ++   D+ G +QTGTGKTA+F +P  
Sbjct: 4   LKFNELNLSNEILKAVEDLGFEEATPIQSLSIPKMMTGIDIIGQSQTGTGKTAAFGIP-- 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADN---FEKYGKNYNLTVALLIGGIPFEAQNK 117
            +LEK  A+ +  +++IL PTRELA QVA+    F KY K  N  +  + GG P + Q  
Sbjct: 62  -VLEKTNAKNKAVQSVILCPTRELAIQVAEELKLFSKYKKGIN--IVPVYGGQPIQRQMI 118

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +GA ++I TPGR++DH  R  L ++   I+++DEAD MLDMGF   I+ I   +P  
Sbjct: 119 ALSKGAQIVIGTPGRVIDHLERRTLKLDTASIVILDEADEMLDMGFRDDIELILKSIPEG 178

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+ FSATM  E   +++ +  +P+ I+V +   T  +IE  +     +  +K   L +
Sbjct: 179 RQTVFFSATMPKEFLSLTKKYQHSPETIKVVSEKLTVPSIEQYYFDI--KEHQKLEALTR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   D  K  ++FCN KK V  +  SL+ +G+   AIHG+++Q  R +++S F+ G+I+
Sbjct: 237 CLDMYDP-KLSLVFCNTKKRVDEVTSSLQARGYYADAIHGDMNQSQRNRVMSKFRNGSIE 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L++A+D+AARG+D+  +  VFNFDVP   E+Y+HRIGRTGRAG+ GKA++ V+ +DI  +
Sbjct: 296 LLIATDVAARGIDVDGIDMVFNFDVPKDDEDYVHRIGRTGRAGKAGKAYSFVSGKDIYKL 355

Query: 358 DAIEK 362
             I++
Sbjct: 356 RDIQR 360


>gi|254247856|ref|ZP_04941177.1| hypothetical protein BCPG_02669 [Burkholderia cenocepacia PC184]
 gi|124872632|gb|EAY64348.1| hypothetical protein BCPG_02669 [Burkholderia cenocepacia PC184]
          Length = 545

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 153/390 (39%), Positives = 233/390 (59%), Gaps = 34/390 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 69  FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 128

Query: 61  ------TILEKGRA---------RVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99
                 T  ++ RA         RVR P+       L+L PTRELA QV      YGK+ 
Sbjct: 129 FAQLQKTQAQQPRAPREPNQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 188

Query: 100 -NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L    ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRM
Sbjct: 189 KRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 248

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214
           LDMGFI  I+ I +  P +RQT+LFSAT+  ++  ++   L++P+RIE+     + ++ A
Sbjct: 249 LDMGFIEDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIA 308

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +T+ +           K  LL  LL+  D +   IIF   K +   L   L   GF   A
Sbjct: 309 QTVHYV-----DDRDHKDRLLDHLLRD-DALDQAIIFTATKIDADQLAGRLADAGFESAA 362

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIG
Sbjct: 363 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 422

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RTGRAGR G A +LV   +   +  IE+ +
Sbjct: 423 RTGRAGRSGIAVSLVHHAEQGALKRIERFV 452


>gi|16421839|gb|AAL22152.1| cysteine sulfinate desulfinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|261248446|emb|CBG26283.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|332990138|gb|AEF09121.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 646

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 25  FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 85  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 379 RTMKLTIPEVELPNAEL 395


>gi|293334655|ref|NP_001168054.1| hypothetical protein LOC100381784 [Zea mays]
 gi|223945725|gb|ACN26946.1| unknown [Zea mays]
          Length = 672

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 145/369 (39%), Positives = 222/369 (60%), Gaps = 8/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        ++  VL AG+  PTPIQ ++ P+ ++  D+  +A+TG+GKT  ++LP  
Sbjct: 157 MTFQSTCFPSDILREVLQAGFSAPTPIQAQSWPIAMKGRDIVAVAKTGSGKTLGYLLPGF 216

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L++     R  P  L+L PTRELA Q+ D   K+G++  ++   L GG P   Q ++L
Sbjct: 217 ILLKRLHHNSREGPTVLVLSPTRELATQIQDEAIKFGRSSRISSTCLYGGAPKGPQLREL 276

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGADV++ TPGR+ D     K+ +  +  LV+DEADRMLDMGF P I+ I   +P  RQ
Sbjct: 277 ERGADVVVATPGRLNDILEMNKVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKQIPPRRQ 336

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEV-NTPSSTA--ETIEHCFVATYAQYSKKCALLQ 236
           TL+++AT   E++K++ + L NP ++ + NT    A     +H  V  + + S++   L 
Sbjct: 337 TLMYTATWPKEVRKIASDLLNNPVQVNIGNTDQLVANKSITQHVEVIPHMEKSRR---LD 393

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q+L+SQD     IIFC+ K+    L  +L +Q +   AIHG+  Q  R  +L++F+ G  
Sbjct: 394 QILRSQDPGSKIIIFCSTKRMCDQLARNLSRQ-YGASAIHGDKSQAERDSVLNDFRSGRC 452

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G A+T    +D K+
Sbjct: 453 PVLVATDVAARGLDIKDIRIVVNYDFPTGVEDYVHRIGRTGRAGATGSAYTFFGDQDSKY 512

Query: 357 IDAIEKLIE 365
              + K++E
Sbjct: 513 ASELVKILE 521


>gi|305667396|ref|YP_003863683.1| DEAD/DEAH box helicase-like protein [Maribacter sp. HTCC2170]
 gi|88709444|gb|EAR01677.1| DEAD/DEAH box helicase-like protein [Maribacter sp. HTCC2170]
          Length = 432

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 157/423 (37%), Positives = 245/423 (57%), Gaps = 23/423 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LG+   ++ A+   GY  PTPIQ + +P++L+  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MTFKNLGIIEPILKALGQEGYSSPTPIQEQAVPILLKGKDLLGCAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             +   R    R R  + L++ PTRELA Q+ ++F  YGK   +   ++ GG+    Q +
Sbjct: 61  QQIHNDRQSNDRHRKIKALVVTPTRELAIQIGESFTAYGKFTGIRNTVIFGGVKQGKQTQ 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G D+LI TPGR+LD  N+G + + +IE  V+DEAD+MLDMGFI  I+ I + +P  
Sbjct: 121 ALKNGVDILIATPGRLLDLMNQGFISLRDIEYAVLDEADQMLDMGFIHDIRKIIAKLPPK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+L FSATM  ++  +S   L + +R+ +    +TAE +E   +  +   S K  LL  
Sbjct: 181 RQSLFFSATMPKDIVALSRTILGDFERVTIKPEQATAEKVEQ--LVYFVNKSNKVKLLVH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+++    + ++F   K     +   L +   +  AIHGN  Q +R K L +FK G ++
Sbjct: 239 LLENRPN-SSVLVFSRTKHGANKIVKKLGQADIASAAIHGNKSQTARQKALGDFKAGELK 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARG+D+ D+  V NFD+PN  E Y+HRIGRTGRA   G A +   +++  ++
Sbjct: 298 VLIATDIAARGIDVDDLALVVNFDLPNVPETYVHRIGRTGRASASGIAISFCDRDEQPYL 357

Query: 358 DAIEKLIEKKV------DWLNGDLSS-LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
             IEKLI+++V       +++ D +  LNP   K +    N +   N          RRK
Sbjct: 358 RDIEKLIKQQVPRMPEHPFISDDSTEVLNPKQNKGNSGNRNRSSSQN----------RRK 407

Query: 411 KNY 413
            NY
Sbjct: 408 SNY 410


>gi|213585104|ref|ZP_03366930.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 327

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 147/330 (44%), Positives = 210/330 (63%), Gaps = 8/330 (2%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--ILEKGRARVRM 72
           A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L   I  +  A+ R 
Sbjct: 2   AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 61

Query: 73  P-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
           P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  KL  G DVL+ TPG
Sbjct: 62  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 121

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  RQ LLFSAT +D++
Sbjct: 122 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 181

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQSQDTMKNGII 250
           + ++E  L+NP  IEV   ++ +E + +H     +    +K  LL Q++  Q   +  ++
Sbjct: 182 KALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLSQMI-GQGNWQQVLV 237

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F   K    +L   L K G    AIHGN  Q +R + L++FK G I+++VA+D+AARGLD
Sbjct: 238 FTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLD 297

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           I ++ HV N+++PN  E+Y+HRIGRTGRA 
Sbjct: 298 IEELPHVVNYELPNVPEDYVHRIGRTGRAA 327


>gi|254448048|ref|ZP_05061512.1| cold-shock deAd box protein a [gamma proteobacterium HTCC5015]
 gi|198262474|gb|EDY86755.1| cold-shock deAd box protein a [gamma proteobacterium HTCC5015]
          Length = 586

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 147/370 (39%), Positives = 221/370 (59%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+L L   ++  +   GY +P+PIQ ++IP +++  D+ G AQTGTGKTA+F LP+L
Sbjct: 6   VSFAELALPAPLLKTLAHIGYEQPSPIQAESIPPLMEGRDLLGTAQTGTGKTAAFALPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
           T ++     V  P+ L+L PTRELA QV++ F+ Y    N   V  + GG     Q K L
Sbjct: 66  TRIDTA---VAQPQVLVLAPTRELAIQVSEAFKSYAAGMNQFRVLPIYGGADIGGQIKAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGR++DH  R  L ++ ++ +V+DEAD ML MGFI  +  I S  P  RQ
Sbjct: 123 KRGPQVIVGTPGRVMDHLRRKTLKLDQLQSVVLDEADEMLRMGFIEDVNWILSHTPEERQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   ++K+S  +L NP  I++   ++T + IE  +     + + K   L ++L
Sbjct: 183 IALFSATMPAPIKKLSAQYLNNPVEIKIKADTATVDRIEQSY--WLVKGTNKLDALTRIL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +D     I+F   K   V L   LE +G+   AI+G++ Q+ R + +   K+  I ++
Sbjct: 241 EVED-FDGVIMFARTKNMTVELADKLEARGYRSAAINGDMTQKIRERTIKQLKDEKIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV NFD+P   E Y+HRIGRTGRAGR GKA   VA  +   + A
Sbjct: 300 VATDVAARGIDVARVSHVINFDIPYDTEAYVHRIGRTGRAGRDGKAILFVAPRERHLLRA 359

Query: 360 IEKLIEKKVD 369
           IEK   + ++
Sbjct: 360 IEKATRQTIE 369


>gi|260564054|ref|ZP_05834540.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|260154070|gb|EEW89162.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
          Length = 510

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 155/386 (40%), Positives = 230/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I    V       +K  LL  +L 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGATASEITQ--VVHPVPTKEKRRLLSAMLT 326

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 327 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470


>gi|91225696|ref|ZP_01260725.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 12G01]
 gi|269966740|ref|ZP_06180817.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 40B]
 gi|91189585|gb|EAS75860.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 12G01]
 gi|269828663|gb|EEZ82920.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 40B]
          Length = 643

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 147/368 (39%), Positives = 223/368 (60%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L+  ++ A+   G+V PTPIQ   IP +L+  D  G AQTGTGKTA+F LP+L  
Sbjct: 8   FSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLLNK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+  +   R P+ ++L PTRELA QVA   +  GKN   L V  + GG     Q + L+ 
Sbjct: 68  LDLNQ---RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRALKS 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR+ D  NR +L ++ +   V+DEAD ML+MGF+  +  I    P + Q +
Sbjct: 125 GAHVVVGTPGRVQDLINRERLHLDEVSTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   L+K+ E FL++P  ++V   + T + ++  F        +K   + +LL++
Sbjct: 185 LFSATMPPMLKKIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKG--VEKDEAMSRLLET 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++VA
Sbjct: 243 EET-DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  IE
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIE 361

Query: 362 KLIEKKVD 369
           ++ +  ++
Sbjct: 362 RVTKSSME 369


>gi|303249337|ref|ZP_07335567.1| DEAD/DEAH box helicase domain protein [Desulfovibrio fructosovorans
           JJ]
 gi|302489269|gb|EFL49229.1| DEAD/DEAH box helicase domain protein [Desulfovibrio fructosovorans
           JJ]
          Length = 498

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 146/368 (39%), Positives = 213/368 (57%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F    L P +   +   GY  PTPIQ + IP V    D+ G+AQTGTGKTA+F+LP++
Sbjct: 21  LSFDSFCLHPTICANIARIGYETPTPIQAEAIPHVADGRDIMGLAQTGTGKTAAFLLPII 80

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   +   R  R LIL PTRELA Q+       G+   L  A++ GG+    Q + L 
Sbjct: 81  HRLMTTKPEKRGVRALILAPTRELAEQIYRAGVDLGRGTRLRAAVIYGGVGMFPQVRALR 140

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++  PGR+LDH N+G +  + +E LV+DEAD M DMGF+P ++ I + VP  RQT
Sbjct: 141 QGLDIVVACPGRLLDHMNQGNVRFDALETLVLDEADHMFDMGFLPDLRRILAAVPEKRQT 200

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +  ++   L +P  + +    + A T+EH      +  ++K  LL  LL 
Sbjct: 201 LLFSATMPAAIAGLAGETLTDPVTVRIGH-LAPAATVEHAIYPVSS--AQKTPLLLHLL- 256

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   ++ I+F   K    NL   L + G     + GN+ QR R   +  F+ GT Q++V
Sbjct: 257 GEAAKESVIVFTRTKHRAKNLAQQLCRAGHKATCLQGNLSQRQRQIAMDGFRRGTFQVLV 316

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV N+D+P+  E Y HRIGRTGRA R G+A T V  ED+  + AI
Sbjct: 317 ATDIAARGIDVSQVAHVVNYDIPDTPEAYTHRIGRTGRAERDGQAHTFVTGEDMSMVRAI 376

Query: 361 EKLIEKKV 368
           E+ ++K +
Sbjct: 377 ERHMKKPL 384


>gi|127513728|ref|YP_001094925.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126639023|gb|ABO24666.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 408

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 159/406 (39%), Positives = 243/406 (59%), Gaps = 12/406 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L   +  A+    + + T IQ + IPLVL   D+   AQTGTGKTA+F LP+L
Sbjct: 1   MLFSQLSLPAPLQQALEALAFSEATQIQAEAIPLVLSGVDLMASAQTGTGKTAAFALPIL 60

Query: 61  TIL---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L    +     + PR L+L PTRELA QV      + +  +L+  L+ GG+  EAQ +
Sbjct: 61  AKLMGLAQAEGSDKQPRALVLVPTRELALQVHQGISDFARFTSLSAGLVYGGVSIEAQCQ 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G D+++ TPGR+LD   RG   ++ +  LV DEADRMLDMGF   I  + +L+P  
Sbjct: 121 QLAAGVDLIVATPGRLLDLHRRGAAKLDGVAQLVFDEADRMLDMGFADEIAELMALLPSE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT+ D++  +S  +L+ PKRI V+  +S ++ +E    A  ++  +K ALL  
Sbjct: 181 RQTLLFSATLDDKVLALSHRWLKQPKRIAVSPQNSASQDVEQRVYAVDSE--RKFALLSH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+   D  +  ++F  +K     L   L +QG    A HG++ Q +R ++L++F+ G I+
Sbjct: 239 LINKGDWQRV-LVFSRKKVAADKLAARLCEQGIMAKAFHGDLGQGAREQVLADFRRGEIK 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  + +V N+++P  A++Y+HRIGRTGRAG+ G A TL  +ED   +
Sbjct: 298 VLVATDVAARGIDIESLDYVVNYELPYVAQDYVHRIGRTGRAGKQGVAVTLYCEEDALLL 357

Query: 358 DAIEKLIEKKV--DWLNG---DLSSLNP-PLEKIDIAQHNHARKNN 397
           + IE L++K++   WL G   DL+  +P P      AQ   A++  
Sbjct: 358 EEIEALLDKRLPQQWLPGFEPDLTKADPNPRRNGKAAQKRRAKRRG 403


>gi|161486782|ref|NP_806876.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|161501917|ref|NP_457662.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|213052975|ref|ZP_03345853.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425440|ref|ZP_03358190.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213646152|ref|ZP_03376205.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213850431|ref|ZP_03381329.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289825794|ref|ZP_06544962.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 629

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|262171576|ref|ZP_06039254.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
 gi|261892652|gb|EEY38638.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
          Length = 412

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 153/373 (41%), Positives = 221/373 (59%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +   V   GY  PT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 15  MPFSQLGLSDVLTQTVARLGYQTPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 74

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YGK+  L    + GG+  +AQ ++L
Sbjct: 75  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 134

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 135 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 194

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  + +P  I +    ++   I    +        K ALL  L+
Sbjct: 195 FLLFSATLSRKVRELAKTAVNDPYEISIAANQASKSNISQWLITV--DKDTKSALLSHLI 252

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 253 NEQQ-WDQALIFIETKHGAAKLVTQLEKRGIQAEAFHSGRSQAIRAQLLEDFKSGKIKYL 311

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 312 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRADAVGEAISFVSKDNFKNLCM 371

Query: 360 IEK----LIEKKV 368
           IE     LIE++V
Sbjct: 372 IESRLGHLIERRV 384


>gi|295394596|ref|ZP_06804815.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972489|gb|EFG48345.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 459

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 145/365 (39%), Positives = 220/365 (60%), Gaps = 4/365 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   +V ++ +AG   P PIQ  T+P+ L   D+ G A+TGTGKT  F +P+L  
Sbjct: 6   FADLGVEAPIVESLTNAGITHPFPIQALTLPVALTGADIIGQAKTGTGKTLGFGIPLLQR 65

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +  E+ R + R PR L++ PTRELA QVAD+     + ++ ++  + GG  FE Q + L+
Sbjct: 66  ILDEQSREQGRAPRALVVVPTRELAHQVADDLRVASRTFSPSIVTIYGGKDFEPQIRALK 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GADV++ TPGR+LD + R  L  ++I   V DEAD MLD+GF+P ++ I + +P  RQT
Sbjct: 126 DGADVVVGTPGRLLDLYGRRVLNFSHITTAVFDEADEMLDLGFLPDVEKIVAALPAKRQT 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCALLQQLL 239
           +LFSATM  ++  ++  ++  P  I     S T+ T  +     Y  +S  K  L+ ++L
Sbjct: 186 MLFSATMPGQVIALARRYMTQPTHIRATQASDTSTTSVNTKQYVYRAHSMDKTELVGRIL 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +++   +  IIF   K+    L   L+ +GF   A+HG+++Q  R K L  F++GT  ++
Sbjct: 246 RAEGRGRT-IIFARTKRTADRLTGELKARGFQAQALHGDLNQHMREKALKRFRDGTTDVL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAG  G A TL+  ED+     
Sbjct: 305 VATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGNTGIAVTLIDWEDVAKWKL 364

Query: 360 IEKLI 364
           I + +
Sbjct: 365 INRTL 369


>gi|227356697|ref|ZP_03841083.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
 gi|227163205|gb|EEI48136.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
          Length = 465

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 156/374 (41%), Positives = 226/374 (60%), Gaps = 8/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
           DF  LGLS  ++ A+ + GY  PTPIQ + I  +L   DV   AQTGTGKTA+F LP+L 
Sbjct: 3   DFTSLGLSEALLRAIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPILE 62

Query: 61  ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              T  EK + R +  + LIL PTRELAAQ+ADN + Y +   +   ++ GG+    Q  
Sbjct: 63  KLATSAEKTKGR-KPVKALILTPTRELAAQIADNVKAYSRYLPIRSLVVFGGVSINPQMM 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVLI TPGR+LD  ++  + ++ +E+LV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 122 KLRGGVDVLIATPGRLLDLEHQNAVDLSRVEVLVLDEADRMLDMGFIHDIRRVINKLPKK 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT + E+  ++ + L NP  I V   +S AE+++           +K  LL  
Sbjct: 182 RQNLLFSATFSKEITGLANSLLNNPISIAVAPKNSAAESVDQYV--HLVDKKRKTELLSH 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+   +     +IF   K     L   L   G    AIHGN  Q +R + L++FK+G ++
Sbjct: 240 LI-GLENWPQVLIFTRTKHGANKLAEHLNLDGIKSAAIHGNKSQGARTRALADFKDGKLK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI  + +V NF++P  AE+Y+HRIGRTGRA   GKA +LV  ++   +
Sbjct: 299 ALVATDIAARGLDIDQLPYVVNFELPQVAEDYVHRIGRTGRAAATGKAISLVCVDEHGLL 358

Query: 358 DAIEKLIEKKVDWL 371
             IE+L+++++  L
Sbjct: 359 ADIERLLKREIPRL 372


>gi|197284517|ref|YP_002150389.1| ATP-dependent RNA helicase [Proteus mirabilis HI4320]
 gi|194682004|emb|CAR41470.1| putative ATP-dependent RNA helicase [Proteus mirabilis HI4320]
          Length = 465

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 156/374 (41%), Positives = 226/374 (60%), Gaps = 8/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
           DF  LGLS  ++ A+ + GY  PTPIQ + I  +L   DV   AQTGTGKTA+F LP+L 
Sbjct: 3   DFTSLGLSEALLRAIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPILE 62

Query: 61  ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              T  EK + R +  + LIL PTRELAAQ+ADN + Y +   +   ++ GG+    Q  
Sbjct: 63  KLATSAEKTKGR-KPVKALILTPTRELAAQIADNVKAYSRYLPIRSLVVFGGVSINPQMM 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVLI TPGR+LD  ++  + ++ +E+LV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 122 KLRGGVDVLIATPGRLLDLEHQNAVDLSRVEVLVLDEADRMLDMGFIHDIRRVINKLPKK 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT + E+  ++ + L NP  I V   +S AE+++           +K  LL  
Sbjct: 182 RQNLLFSATFSKEITGLANSLLNNPISIAVAPKNSAAESVDQYV--HLVDKKRKTELLSH 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+   +     +IF   K     L   L   G    AIHGN  Q +R + L++FK+G ++
Sbjct: 240 LI-GLENWPQVLIFTRTKHGANKLAEHLNLDGIKSAAIHGNKSQGARTRALADFKDGKLK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI  + +V NF++P  AE+Y+HRIGRTGRA   GKA +LV  ++   +
Sbjct: 299 ALVATDIAARGLDIDQLPYVVNFELPQVAEDYVHRIGRTGRAAATGKAISLVCVDEHGLL 358

Query: 358 DAIEKLIEKKVDWL 371
             IE+L+++++  L
Sbjct: 359 ADIERLLKREIPRL 372


>gi|88808892|ref|ZP_01124401.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
 gi|88786834|gb|EAR17992.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
          Length = 607

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 146/371 (39%), Positives = 224/371 (60%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G S  ++  + + GY +P+PIQ    P ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 59  FAGFGFSEALLRTLEEKGYKEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 118

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           LE    R   PR L+L PTRELA QVAD+F+ Y   + +L V  + GG  F +Q   L+R
Sbjct: 119 LE---GRSSKPRVLVLAPTRELAMQVADSFKAYAAGHPHLNVLAIYGGSDFRSQIHTLKR 175

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR++DH  +G L    +  LV+DEAD ML MGFI  ++ I   +P  RQ +
Sbjct: 176 GVDVVVGTPGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQVV 235

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +E++++S+ +LQ P  I + T    A+ I    +    Q S K   L ++L++
Sbjct: 236 LFSATMPNEIRRLSKRYLQEPAEITIKTKDREAKRIRQRSITM--QNSHKIEALNRVLEA 293

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T +  IIF   K   + +  SLE  G  V  ++G++ Q  R + +   ++GT+ ++VA
Sbjct: 294 V-TGEGVIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVDRLRKGTVNILVA 352

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N+D+P  +E Y+HRIGRTGRAGR G+A   V   + + +  +E
Sbjct: 353 TDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAILFVTPRERRFVGNLE 412

Query: 362 KLIEKKVDWLN 372
           + + + ++ ++
Sbjct: 413 RAVNQSIEPMD 423


>gi|237807743|ref|YP_002892183.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237500004|gb|ACQ92597.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 438

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 229/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L P ++ AV + G+ +PT IQ + IP+ ++  DV   A TGTGKTA+F+LP++
Sbjct: 1   MSFESLELDPVLLQAVEELGFKRPTTIQSQVIPVAMEGRDVMASAPTGTGKTAAFLLPIM 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +++  R R    R LIL PTRELA Q+ +  E      ++ VA +IGG+  E Q   L
Sbjct: 61  QHMIDFPRRRPGPARALILTPTRELALQITEQAEALAAYTHMKVASIIGGVAEEKQLPAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+  D++I TPGR++ +    +    +IEILV+DEADRMLDMGFI  +  I +   + +Q
Sbjct: 121 EKTVDIIIATPGRLMQYIEDERFDSRDIEILVLDEADRMLDMGFIGDVDRIAAEARWRKQ 180

Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQ 237
           T+LFSAT+    L+K +E+ L++P  +    P S  + I+   + A  A++  K  LL+ 
Sbjct: 181 TMLFSATLEGAGLKKFAEDLLKDPAELYAEPPRSERKKIQQLVYFADTAEH--KFNLLKY 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ +D  ++ IIF   ++ +  L   L+  G     + G ++Q  R++ L+ F+   ++
Sbjct: 239 LLQQEDVTRS-IIFVKTRERLAELVSQLQANGIDCAWLRGEMEQEKRIEALNRFRSDRVK 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A+RG+D+PDV HVFN+D+P  A+ YIHRIGRTGRAG+ G A  L+   D+  +
Sbjct: 298 ILVATDVASRGIDLPDVSHVFNYDMPRSADTYIHRIGRTGRAGKKGCAINLIEAHDVGMM 357

Query: 358 DAIEKLIEKKV 368
           + +E+  E+K+
Sbjct: 358 ERVERYAEEKM 368


>gi|301159830|emb|CBW19349.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|323131640|gb|ADX19070.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
          Length = 629

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRVLRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|254787708|ref|YP_003075137.1| DEAD/DEAH box helicase [Teredinibacter turnerae T7901]
 gi|237686799|gb|ACR14063.1| DEAD/DEAH box helicase [Teredinibacter turnerae T7901]
          Length = 426

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 153/373 (41%), Positives = 231/373 (61%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+ L LS +V  A+ D G+   +PIQ K++P  L  HDV G AQTGTGKTA+F++ +   
Sbjct: 43  FSTLDLSSQVARALADMGFEHCSPIQAKSLPYSLSGHDVLGKAQTGTGKTAAFLIAVFED 102

Query: 62  ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L +     R    PR L++ PTREL  Q+A +    GK   L+V  L+GG+ F  Q + 
Sbjct: 103 LLRQPAPEERFAGEPRALVIAPTRELVMQIAKDAAAIGKYAGLSVQTLVGGMDFNKQMQA 162

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           L  +  D+L+ TPGR+LD   R ++ ++ +EILVIDEADRMLDMGFIP ++ I  L P  
Sbjct: 163 LHGQFVDILVATPGRLLDFCERREVYLDQLEILVIDEADRMLDMGFIPQVKRIVRLAPRK 222

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT +D++ +++E+++  P  +E+   +   +++E  F+   +   +K  LL
Sbjct: 223 THRQTLLFSATFSDDVLRLAESWMFEPVSVEIEPETVATDSVEQ-FIYMVSG-DEKLPLL 280

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+   D +KN +IF N++     L   L KQG+ V  + G I Q  R+K L  FKEG+
Sbjct: 281 CNLISMPD-VKNVMIFANRRDQCRTLYERLRKQGYKVGLLSGEIPQGKRVKTLEAFKEGS 339

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q +VA+D+A RG+ I  V HV N+ +P   E+Y+HRIGRTGRAG  G++ +   ++D  
Sbjct: 340 LQALVATDVAGRGIHIDGVSHVVNYTLPEEPEDYVHRIGRTGRAGNTGQSISFACEDDAF 399

Query: 356 HIDAIEKLIEKKV 368
            + AIE+L+ +K+
Sbjct: 400 RLPAIEELLGRKL 412


>gi|134296056|ref|YP_001119791.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134139213|gb|ABO54956.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
           G4]
          Length = 516

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 152/390 (38%), Positives = 226/390 (57%), Gaps = 34/390 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA LGLSP++V A+  AGY KPTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 37  FASLGLSPEIVSALEAAGYAKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 96

Query: 61  -TILEKGRAR--------------------VRMPRTLILEPTRELAAQVADNFEKYGKNY 99
              L+K +A+                    V  P  L+L PTRELA QV      YGK+ 
Sbjct: 97  FAQLQKSQAQQPRAPREPNQGDRRARRPQPVARPSLLVLTPTRELAMQVTTAATTYGKHL 156

Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L    ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRM
Sbjct: 157 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 216

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
           LDMGFI  I+ I +  P +RQT+LFSAT+  ++  ++   L NP+RIE+      A+   
Sbjct: 217 LDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTSRLLNNPERIEI-----VAKIES 271

Query: 219 HCFVATYAQY----SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
              +A    Y      K  LL  LL+  D +   IIF   K +   L   L   GF   A
Sbjct: 272 RANIAQTVHYVDDRDHKDRLLDHLLR-DDALDQAIIFTATKIDADQLAGRLADAGFESAA 330

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIG
Sbjct: 331 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 390

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RTGRAGR G A +LV   +   +  IE+ +
Sbjct: 391 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 420


>gi|288926741|ref|ZP_06420652.1| ATP-dependent RNA helicase DeaD [Prevotella buccae D17]
 gi|288336471|gb|EFC74846.1| ATP-dependent RNA helicase DeaD [Prevotella buccae D17]
          Length = 579

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 162/439 (36%), Positives = 262/439 (59%), Gaps = 19/439 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  +   TP+Q K IP +L+ +DV G+AQTGTGKTA+++LP+L
Sbjct: 1   MYFDELDLNDNVLDALYDMRFDSCTPVQEKCIPEILKGNDVLGVAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIG--GIPFEAQN 116
           + L+ G         +I+ PTRELA Q+    + +G   N   +VA+  G  G  ++ + 
Sbjct: 61  SKLDDGGYPKDAINCVIMSPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQEL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  GADV+I TPGR++ H + G + M+ +   V+DEADRMLDMGF   I  I  L+P 
Sbjct: 121 KSLRLGADVVIATPGRLISHISLGNVDMSKVSYFVLDEADRMLDMGFSEDILQIAKLLPN 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T QT++FSATM  +++++++  L+NP  I++   S  AE I+      Y   ++K  +++
Sbjct: 181 TCQTIMFSATMPAKIEELAKTLLKNPVEIKLAV-SKPAEKIKQEAYVCYE--TQKLGIIK 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            + ++ D +K  IIFC  K  V  +  +L+++  +   +H +++Q  R  I+  FK G +
Sbjct: 238 DIFKAGD-LKRVIIFCGSKMKVKQVNAALQRKHINCGEMHSDLEQAERDDIMFKFKSGQL 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ ARG+DI D+  V N+DVP+ AE+Y+HRIGRT RA R G+A TLV+++DI H
Sbjct: 297 DVLVATDIVARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGRAITLVSEDDIYH 356

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH-NHARKNNPIPQKSTGFDRRKKNYSS 415
              IEK +EK+V+ +         PL   D+ +   +AR++ P   ++T   RR+K+   
Sbjct: 357 FQQIEKFLEKEVEKI---------PL-PADLGEAPEYARQSRPSKGRTTAKSRRRKDRDQ 406

Query: 416 QKSHIPLKESEKISKLQQD 434
           Q          + ++ +QD
Sbjct: 407 QAHRHKPNNQRRPARPEQD 425


>gi|254505608|ref|ZP_05117754.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16]
 gi|219551261|gb|EED28240.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16]
          Length = 647

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 147/370 (39%), Positives = 224/370 (60%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+   G+V PTPIQ   IP +L   D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L+ G+   R P+ ++L PTRELA QVA   +  GKN   L V  + GG     Q + L
Sbjct: 66  NKLDLGQ---RKPQAIVLAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D  NR +L ++ +   V+DEAD ML+MGF+  +  I    P + Q
Sbjct: 123 KNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   L+ + E FL++P+ I+V   + T + +E  F        +K   + +LL
Sbjct: 183 RVLFSATMPPMLKSIVERFLRDPETIDVAGKNHTVDKVEQQFWVVKG--VEKDEAMSRLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    ++ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRT 359

Query: 360 IEKLIEKKVD 369
           IE++ +  ++
Sbjct: 360 IERVTKSSME 369


>gi|78060377|ref|YP_366952.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
 gi|77964927|gb|ABB06308.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
          Length = 481

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 152/368 (41%), Positives = 225/368 (61%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  + D  Y  PTP+Q K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIDPLLRNLQDLNYQAPTPVQAKAIPAVLGGKDVMAGAQTGTGKTAGFALPLL 60

Query: 61  T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +++ G A      R L+L PTRELA QV  +F  YGK  +L      GG+    Q  K
Sbjct: 61  QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIAYGKGLDLRFLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D+++ ++   L+ P  I V+ P++TA  I+  +V T  + +K    +   
Sbjct: 181 QTLLFSATFSDDIRAMAATILRGPVNISVSPPNATASKIKQ-WVVTVDKRNKPDLFMH-- 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +++  ++ ++F   +  V  L   L++ G++V  IHG+  Q +R++ L  FK G +Q+
Sbjct: 238 LVAENKWEHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEK 366
           AIE LI++
Sbjct: 358 AIEALIKQ 365


>gi|254704340|ref|ZP_05166168.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|260566411|ref|ZP_05836881.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
 gi|260155929|gb|EEW91009.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
          Length = 503

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 155/386 (40%), Positives = 230/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I    V       +K  LL  +L 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 326

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 327 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470


>gi|157960630|ref|YP_001500664.1| ATP-dependent RNA helicase SrmB [Shewanella pealeana ATCC 700345]
 gi|157845630|gb|ABV86129.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 411

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 147/373 (39%), Positives = 229/373 (61%), Gaps = 14/373 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L P ++ ++   G+ KPT IQ +TIP+ +++ D+   A TGTGKTASF+LP L
Sbjct: 4   MQFEDLQLDPCLLESLKAMGHNKPTTIQQQTIPVAMEQRDILARAPTGTGKTASFLLPAL 63

Query: 61  TIL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L        GRARV     LIL PTRELA+Q+            L   ++ GG+P+  
Sbjct: 64  QHLIDFPRRYGGRARV-----LILTPTRELASQIHRYASHLATGLGLDTVIITGGVPYGP 118

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L++  D+L+ TPGR++++ ++G      +E+L+IDEADRMLDMGF   +++I    
Sbjct: 119 QEEALQKNVDILVATPGRLMEYLDKGHFNAEEVEVLIIDEADRMLDMGFSAVVESIAIES 178

Query: 175 PFTRQTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
              +QT+LFSAT+   ++ + S N L NP ++E   P S    I H ++      + K A
Sbjct: 179 VGRKQTMLFSATLEGSDVGRFSHNLLTNPVKLEAEAPRSEKAKI-HQWIHLADDKAHKFA 237

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  LL+ Q+ ++  I+F   +++V +L   L+K+G +   + G+++Q++R + L  F +
Sbjct: 238 LLCALLK-QEEVQRTIVFVKTRESVASLEGLLQKEGITCAFMRGDMEQKARFQALGRFTK 296

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G + +++A+D+AARG+DI D+ HV NFD+P  A+ Y+HRIGRTGRAG  G A +LV   D
Sbjct: 297 GEVNILLATDVAARGIDIDDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHD 356

Query: 354 IKHIDAIEKLIEK 366
           I+ +  IE+ IE+
Sbjct: 357 IRVVGKIERYIEQ 369


>gi|304314413|ref|YP_003849560.1| ATP-dependent RNA helicase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587872|gb|ADL58247.1| predicted ATP-dependent RNA helicase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 425

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 149/368 (40%), Positives = 226/368 (61%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++  +S ++  A+ D G+   TPIQ  T+P+ L   DV G AQTGTGKTA+F +P+L
Sbjct: 4   LKFSEFDISGEINRALDDMGFEGTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFTIPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE  R    +P+ L++ PTREL  QV D   + GK  N+ V  + GG     Q  +L 
Sbjct: 64  ENLEPER----VPQALVICPTRELCLQVTDEIRRIGKYLNVRVLAVYGGQGIGGQIAELR 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG + +  I  +V+DEAD ML+MGFI  I+ I S VP  RQT
Sbjct: 120 RGVHVIVATPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPERRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT++  + +++E ++++P+ + V    S    I+  +  T  +   K  LL  +L 
Sbjct: 180 MLFSATISKPVLRIAERYMRSPQILRVEKKHSPR--IDEFYFKTREE--DKVELLDWILT 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S D ++ G+IFCN K+ V  L   L + G+SV  IHG++ Q  R +++  F++G   L++
Sbjct: 236 SND-IRMGLIFCNTKRRVQRLRKQLSRMGYSVDEIHGDLSQSKRERVMERFRKGRFNLLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ +PDV  V N+D+P   E Y+HRIGRTGRAG  GK+FTLV   ++  +  I
Sbjct: 295 ATDVAARGIHVPDVEVVVNYDLPFENEYYVHRIGRTGRAGSSGKSFTLVVGREVHRLRRI 354

Query: 361 EKLIEKKV 368
           +    K++
Sbjct: 355 QSFTGKRI 362


>gi|261314221|ref|ZP_05953418.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|261303247|gb|EEY06744.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
          Length = 462

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 153/386 (39%), Positives = 229/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 16  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 76  IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 135

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 136 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 195

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I         +  ++  LL  +L 
Sbjct: 196 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRR--LLSAMLT 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 254 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 312

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P   HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 313 ATDIAARGIDVPGSSHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 371

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 372 AVERVTRSKLSIKDAPVKLAPAPVAK 397


>gi|258645792|ref|ZP_05733261.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
           DSM 15470]
 gi|260403163|gb|EEW96710.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
           DSM 15470]
          Length = 510

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 140/364 (38%), Positives = 226/364 (62%), Gaps = 16/364 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL P+++ A+ D G+ +PTPIQ  +IP  ++  D+ G AQTGTGKTA+F +P   I
Sbjct: 5   FKELGLVPEIMKAIEDMGFEEPTPIQKVSIPAAMEGKDLIGQAQTGTGKTAAFGIP---I 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEK     + P+ ++L PTRELA Q A+   +  +   +    + GG   E Q + L + 
Sbjct: 62  LEKIDTTEKGPQAIVLSPTRELAIQSAEEMNRLAQYLPIHALPIYGGQDIERQFRALRKK 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++++ TPGR++DH  RG + +++++ILV+DE D M+DMGFI  I+ I + +P  RQT+ 
Sbjct: 122 PNIIVATPGRLMDHMKRGTIDLSHVQILVLDEGDEMVDMGFIDDIRTILAGMPEERQTMF 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA--TYAQYSKKCALLQQLLQ 240
           FSATM   +++++E+FL++P  +++   + T + +E  ++      ++   C LL     
Sbjct: 182 FSATMPAPIRELAESFLRDPVLVKIKAATVTIDLVEQEYIELPDMQKFDCLCRLLD---- 237

Query: 241 SQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               M+N    I+F   K+    +  +L+K+G+    +HG++ Q+ R  ++  FKEGTI 
Sbjct: 238 ----MENPELAIVFVRTKRRADEVTEALKKRGYMAEGLHGDLSQQKRDAVVRQFKEGTID 293

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  V HV+NFD+P  +E Y+HR+GRTGRAG+ G A T V   +I  +
Sbjct: 294 ILVATDVAARGLDISGVTHVYNFDMPQDSETYVHRVGRTGRAGQTGLAMTFVVSREIGQL 353

Query: 358 DAIE 361
             IE
Sbjct: 354 HDIE 357


>gi|237815476|ref|ZP_04594474.1| DEAD-box ATP dependent DNA helicase [Brucella abortus str. 2308 A]
 gi|237790313|gb|EEP64523.1| DEAD-box ATP dependent DNA helicase [Brucella abortus str. 2308 A]
          Length = 545

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 155/386 (40%), Positives = 230/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 103 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 162

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 163 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 222

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 223 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 282

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I    V       +K  LL  +L 
Sbjct: 283 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 340

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 341 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 399

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 400 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 458

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 459 AVERVTRSKLSIKDAPVKLAPAPVAK 484


>gi|258627528|ref|ZP_05722305.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM603]
 gi|258580110|gb|EEW05082.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM603]
          Length = 398

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 153/373 (41%), Positives = 221/373 (59%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +   V   GY  PT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSQLGLSDVLTQTVARLGYQTPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YGK+  L    + GG+  +AQ ++L
Sbjct: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  + +P  I +    ++   I    +        K ALL  L+
Sbjct: 181 FLLFSATLSRKVRELAKTAVNDPYEISIAANQASKSNISQWLITV--DKDTKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 239 NEQQ-WDQALIFIETKHGAAKLVTQLEKRGIQAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRADAVGEAISFVSKDNFKNLCM 357

Query: 360 IEK----LIEKKV 368
           IE     LIE++V
Sbjct: 358 IESRLGHLIERRV 370


>gi|189425337|ref|YP_001952514.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
 gi|189421596|gb|ACD95994.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 452

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 162/414 (39%), Positives = 233/414 (56%), Gaps = 25/414 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DL L  +V+  +  AG+   TPIQ +T+PL L   DV G AQTGTGKTA+F++ + 
Sbjct: 1   MKFSDLSLPAQVLQGIHQAGFNACTPIQAQTLPLSLSGKDVAGQAQTGTGKTAAFLITLF 60

Query: 61  TIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           T L           +  PR LIL PTREL  Q+  + +  G +    +  + GGI +  Q
Sbjct: 61  TKLLASPSAAADGSLPRPRALILAPTRELVVQIEKDAQLLGSHCGFNIQAIYGGIDYMKQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLV 174
              L+ GAD++I TPGR++D+  +    + +IE+LVIDEADRM DMGFIP ++ I   L 
Sbjct: 121 KNALKDGADIVIGTPGRLIDYLKQKVYSLKHIEMLVIDEADRMFDMGFIPDLRYILRRLP 180

Query: 175 PF-TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           PF  RQ L+FSAT+   + ++S  F+  P+++ V     TAE +E      Y   +K+  
Sbjct: 181 PFDQRQNLMFSATLNQRVMELSYEFMNVPQKVSVTPEKMTAERVEQVL---YHVSNKEKF 237

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L   L  ++ M   ++F N K+    L   L    F    I G++DQR RM IL  FK 
Sbjct: 238 PLLLGLLRREGMARTMLFVNTKREAERLQDRLNANEFPCRVISGDVDQRKRMNILEQFKR 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G + +++A+D+A+RGL I  V HV N+D+P  AE+Y+HRIGRT RAG  GKA +L  ++ 
Sbjct: 298 GELAILIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISLADEDG 357

Query: 354 IKHIDAIEKLIEKK--VDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKST 404
             +I+AIE+ I  K  V+W   DL              H++ R K+ P P  ST
Sbjct: 358 AFYIEAIEEYIRHKVAVEWAEDDLFI------------HDYKRPKHRPAPVAST 399


>gi|139473559|ref|YP_001128275.1| DEAD box helicase family protein [Streptococcus pyogenes str.
           Manfredo]
 gi|134271806|emb|CAM30039.1| DEAD box helicase family protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 539

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 228/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               K R    + + L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  N---KIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  ++++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKAVILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ +++     T   ++  +V    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 236 VNQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKQMKPL 365


>gi|225432126|ref|XP_002274485.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1864

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 146/369 (39%), Positives = 225/369 (60%), Gaps = 8/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G  P+++  +  AG+  PTPIQ +T P+ LQ  D+  IA+TG+GKT  +++P  
Sbjct: 498 MTFEATGFPPEILREIYSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAF 557

Query: 61  TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L + R  V+  P  ++L PTRELA Q+ D   K+G++  ++ A L GG    AQ K+L
Sbjct: 558 ILLRRRRNNVQNGPTVMVLAPTRELATQIQDETIKFGRSSRVSCACLYGGTSRNAQLKEL 617

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGADV++ TPGR+ D     K+ +  I +LV+DEADRMLDMGF P I+ I + +P  RQ
Sbjct: 618 DRGADVVVATPGRLNDILESKKIDLGQISLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQ 677

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY---SKKCALLQ 236
           TL+++AT   E++K++ + L NP ++ +    S  E   +  +  Y +     +K   L+
Sbjct: 678 TLMYTATWPKEVRKIAGDLLVNPVQVNI---GSVDELAANKAITQYVEVVSPPEKQRRLE 734

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q+L+SQ+     IIFC+ KK    L  S+ +  F    IHG+  Q  R  +L+ F+ G  
Sbjct: 735 QILRSQERGSKVIIFCSTKKLCDQLARSIGRN-FGAAVIHGDKSQVERDWVLNQFRSGKS 793

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G ++T  +++D K+
Sbjct: 794 PILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDCKY 853

Query: 357 IDAIEKLIE 365
              + K++E
Sbjct: 854 AADLIKVLE 862


>gi|261210866|ref|ZP_05925156.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
 gi|260839841|gb|EEX66441.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
          Length = 435

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 154/373 (41%), Positives = 220/373 (58%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +   V   GY  PT IQ + IP++LQ  DV   AQTGTGKTASFVLP+L
Sbjct: 38  MPFSQLGLSDVLTHTVAQLGYQTPTQIQTQAIPVILQGRDVIAAAQTGTGKTASFVLPIL 97

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YGK   L    + GG+  +AQ ++L
Sbjct: 98  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKATGLKGLAVFGGVDEQAQKQRL 157

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 158 IEGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPNEVQ 217

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  + +P  I +    ++   I    +        K ALL  L+
Sbjct: 218 FLLFSATLSRKVRELAKTAVNDPYEITIAANQASKSNISQWLITV--DKDTKSALLSHLI 275

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 276 TEQQ-WDQALIFIETKHGAAKLVTQLEKRGIQAEAFHSGRSQAIRAQLLEDFKAGKIKYL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 335 VATGVAARGIDIEQLSRVVNYDLPFPADEYVHRIGRTGRADAVGEAISFVSKDNFKNLCM 394

Query: 360 IEK----LIEKKV 368
           IE     LIE++V
Sbjct: 395 IESRLGHLIERRV 407


>gi|25511900|pir||AB0901 ATP-dependent RNA helicase (dead-box protein) [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16504348|emb|CAD07800.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29139168|gb|AAO70736.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 646

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 25  FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 85  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 379 RTMKLTIPEVELPNAEL 395


>gi|170766108|ref|ZP_02900919.1| cold-shock DEAD box protein A [Escherichia albertii TW07627]
 gi|170125254|gb|EDS94185.1| cold-shock DEAD box protein A [Escherichia albertii TW07627]
          Length = 627

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 143/379 (37%), Positives = 233/379 (61%), Gaps = 10/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDLSS 377
              KL   +V+  N +L S
Sbjct: 362 RTMKLTIPEVELPNAELLS 380


>gi|301047996|ref|ZP_07195038.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 185-1]
 gi|300300139|gb|EFJ56524.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 185-1]
          Length = 646

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 25  FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 85  LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPAGHQTA 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 319 TDVAARGLDVERISLVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 379 RTMKLTIPEVELPNAEL 395


>gi|296112376|ref|YP_003626314.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis RH4]
 gi|295920070|gb|ADG60421.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis RH4]
          Length = 577

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 144/368 (39%), Positives = 229/368 (62%), Gaps = 8/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGL+  ++ A+  +GY  PTPIQ K IP  L   D+   AQTG+GKTA+FVLP+L  
Sbjct: 20  FSDLGLNKPILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDK 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           + +     +  + LIL PTRELA QV D+  +YG    N+    L+GG P+  Q + L++
Sbjct: 80  MSRKPTIEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKK 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+I TPGR++DH   G++ ++ +++L++DEADRMLDMGF   I+ I    P TRQT+
Sbjct: 140 GVQVIIATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQTV 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + SAT    + K++E+F  NP+++ +   S+   E++ +C       ++ K  +L Q+L 
Sbjct: 200 MSSATWDGAVGKIAESFTVNPEKVSIKVESAHIDESVYYC-----DDFNHKNNILLQVLN 254

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   +K  +IF   K +   L   L + GF    +HG++ Q  R +I+S+ K G   L+V
Sbjct: 255 NP-KIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDLLV 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + HV N+D+P + E+Y+HRIGR GRAGR G A  L + +D + ++ I
Sbjct: 314 ATDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQLEHI 373

Query: 361 EKLIEKKV 368
            + +++++
Sbjct: 374 NRYLKRQM 381


>gi|239831927|ref|ZP_04680256.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239824194|gb|EEQ95762.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 470

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 149/370 (40%), Positives = 228/370 (61%), Gaps = 8/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ++ IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 24  FAALGVTGILLKGVEAAGMTEPKPIQLQAIPHQLEGRDILGIAQTGSGKTAAFSLPILQK 83

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 84  IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKHAHISTALVLGGVSKLSQIKRIA 143

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 144 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHSERQT 203

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++ + L++P R+EV    +TA  I       + +  ++  LL  LL 
Sbjct: 204 ALFSATMPKEIASLAGSLLRDPVRVEVAPQGTTAAEITQVVHPVHTKEKRR--LLSALLG 261

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  M++ I+F   K     +   LE+ G+ V AIHGN  Q +R + L+ F++G++++++
Sbjct: 262 DK-AMRSVIVFTRTKHGADAVVRHLERDGYEVAAIHGNKSQNARQRALNGFRDGSLRILI 320

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 321 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPAAEESK-LR 379

Query: 359 AIEKLIEKKV 368
           A+E++   K+
Sbjct: 380 AVERVTRSKL 389


>gi|153009469|ref|YP_001370684.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561357|gb|ABS14855.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 464

 Score =  279 bits (714), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 149/370 (40%), Positives = 227/370 (61%), Gaps = 8/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ++ IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 17  FAALGVTGILLKGVEAAGMTEPKPIQLQAIPHQLEGRDILGIAQTGSGKTAAFSLPILQK 76

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 77  IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKHAHISTALVLGGVSKLSQIKRIA 136

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 137 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHSDRQT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++ + L +P R+EV    +TA  I       + +  ++  LL  LL 
Sbjct: 197 ALFSATMPKEIASLAGSLLHDPVRVEVAPQGTTAAEITQVVHPVHTKEKRR--LLSALLG 254

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  M++ I+F   K     +   LE+ G+ V AIHGN  Q +R + L+ F++G++++++
Sbjct: 255 DK-AMRSVIVFTRTKHGADAVVRHLERDGYEVAAIHGNKSQNARQRALNGFRDGSLRILI 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 314 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPAAEESK-LR 372

Query: 359 AIEKLIEKKV 368
           A+E++   K+
Sbjct: 373 AVERVTRNKL 382


>gi|261365074|ref|ZP_05977957.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC
           25996]
 gi|288566497|gb|EFC88057.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC
           25996]
          Length = 457

 Score =  279 bits (714), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 159/430 (36%), Positives = 239/430 (55%), Gaps = 27/430 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64

Query: 63  LEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++D    GK+  + +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIETIVEATPTDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    +NP+ +EV       +  E        ++  +  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKNPEVVEVERVDDQGKIEEQLLYCDDMRHKNR--LLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI---PQKSTGF-DRRKKNYSS 415
           IEK I++K              L ++ +      RK  P    P+   G+ DR+   +  
Sbjct: 361 IEKYIDRK--------------LNEVTVEGMEPTRKRKPAGGKPKGKDGWGDRKSGGWRG 406

Query: 416 QKSHIPLKES 425
            K   P KE 
Sbjct: 407 DKK--PGKEG 414


>gi|78066825|ref|YP_369594.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
 gi|77967570|gb|ABB08950.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
          Length = 516

 Score =  279 bits (714), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 152/391 (38%), Positives = 233/391 (59%), Gaps = 34/391 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
           +FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 37  NFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96

Query: 61  -------TILEKGRA---------RVRMPRT------LILEPTRELAAQVADNFEKYGKN 98
                  T  ++ RA         R R P+       L+L PTRELA QV      YGK+
Sbjct: 97  RFAQLQKTQAQQPRAPREPNQGDRRARRPQPVARPGLLVLTPTRELAMQVTTAATTYGKH 156

Query: 99  Y-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
              L    ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 157 LKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 216

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSST 213
           MLDMGFI  I+ I +  P +RQT+LFSAT+  ++  ++   L++P+RIE+     + ++ 
Sbjct: 217 MLDMGFIDDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANI 276

Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
           A+T+ +           K  LL  LL+  D +   IIF   K +   L   L   GF   
Sbjct: 277 AQTVHYV-----DDRDHKDRLLDHLLRD-DALDQAIIFTATKIDADQLAGRLADAGFESA 330

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
           A+HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRI
Sbjct: 331 ALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRI 390

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           GRTGRAGR G A +LV   +   +  IE+ +
Sbjct: 391 GRTGRAGRSGTAVSLVHHAEQGALKRIERFV 421


>gi|330829948|ref|YP_004392900.1| putative ATP-dependent RNA helicase RhlE [Aeromonas veronii B565]
 gi|328805084|gb|AEB50283.1| Putative ATP-dependent RNA helicase RhlE [Aeromonas veronii B565]
          Length = 462

 Score =  279 bits (714), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 170/444 (38%), Positives = 266/444 (59%), Gaps = 20/444 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLSP ++ AV + GY +PTPIQ + IP +L   DV G AQTGTGKTA F LPML
Sbjct: 1   MSFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPML 60

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L    GR R R  R L+L PTRELAAQV ++  KY  +      +  GG+  +     
Sbjct: 61  QRLLANHGRGR-RQVRALVLTPTRELAAQVGESIIKYAHHLPFKTLIAYGGVSIKPNLDA 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++ G D+L+ TPGR+LD   +G L ++ +E+LV+DEADRMLDMGFI  I+ I   +P  R
Sbjct: 120 IKLGVDILVATPGRLLDLLTQGALTLSQLEVLVLDEADRMLDMGFIVDIRRIMKALPAER 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +++++ ++++ L +P  IEV+  ++ AE +    +       ++  LL  +
Sbjct: 180 QTLLFSATFSNDIKALADDLLNDPTLIEVDPSNTAAEQVTQRIIQV--DRERRRELLSHM 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F   K+    L   ++K G +  AIHG+  Q +R + L++F+ G +++
Sbjct: 238 I-GRGNWQRVLVFVRTKQIADRLAQQMQKDGLNTVAIHGDKSQGARNRALADFRSGEVRV 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + +V NF++P  AE+YIHRIGRTGRAGR G+A +LV+++++  + 
Sbjct: 297 LVATDIAARGLDIDQLPYVINFELPQMAEDYIHRIGRTGRAGRGGEAISLVSQDELGQLK 356

Query: 359 AIEKLIEK--KVDWLNGDLSSLNPPLEKIDIAQ----------HNHARKNNPIPQKSTGF 406
           AIE LI +   V+ L G   S  P  + +  ++          H +A+ +N   + + G 
Sbjct: 357 AIEALIGQSLSVEILEGYEPSGKPSRQTLPGSKPVQNPPRARGHANAKSSNAKGKPAAGK 416

Query: 407 DRRKKNYSSQKSHIPLKESEKISK 430
            + K + S  K   P ++ E + +
Sbjct: 417 GKAKGDAS--KKTAPARKREVVGE 438


>gi|198242882|ref|YP_002217254.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197937398|gb|ACH74731.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326625031|gb|EGE31376.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 629

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 231/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + ++ A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILTA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|283788210|ref|YP_003368075.1| ATP-dependent RNA helicase (DEAD-box protein) [Citrobacter
           rodentium ICC168]
 gi|282951664|emb|CBG91364.1| ATP-dependent RNA helicase (DEAD-box protein) [Citrobacter
           rodentium ICC168]
          Length = 626

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 143/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   V+ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPVLEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|21228658|ref|NP_634580.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
 gi|20907159|gb|AAM32252.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
          Length = 429

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 159/388 (40%), Positives = 232/388 (59%), Gaps = 15/388 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LGLS  V+ ++ + G+  PT IQ K+IPL+L   DV G A TG+GKT SF   +L 
Sbjct: 30  NFKKLGLSNAVLKSIDEHGFESPTAIQEKSIPLILAGEDVIGGAATGSGKTLSFASGILQ 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             EKG+      + LIL PTRELA QVA++  K+ K   L +A + GG+    Q K+L +
Sbjct: 90  NSEKGKG----IQALILTPTRELAEQVANSLRKFSKYDPLNIASIYGGVGINTQIKEL-K 144

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            A+V++ TPGR+LDH +R  + +NN++ LV+DEAD M DMGF   ++ I    P  RQTL
Sbjct: 145 NAEVVVGTPGRLLDHISRNTIKLNNVKTLVLDEADHMFDMGFKVDVEKIIKECPQNRQTL 204

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+T ++ ++S  +++NP R+   +  S  +  +   V    Q   K +LL  LLQ+
Sbjct: 205 LFSATITKDIVRLSRKYMENPVRV---STESYIDPQKLNQVVYKVQDDMKLSLLVYLLQN 261

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + +   G++FCN K+N   +  +L K   +  AIHG + Q  R +IL  F  G I ++V 
Sbjct: 262 EKS-NLGMVFCNTKRNTDKVAKNLRKSSINAVAIHGGLTQNERTRILEKFHSGNIGVLVC 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A RGLDI  V HV+N+D+P  ++ YIHRIGRT RAG  GKA  +++K D  H + + 
Sbjct: 321 TDVAGRGLDIQGVSHVYNYDIPRESKQYIHRIGRTARAGTEGKAINILSKND--HANFMS 378

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
            L +  VD     L    P L+KI I +
Sbjct: 379 VLKDNDVDIKEQAL----PALKKIVIER 402


>gi|332345119|gb|AEE58453.1| cold-shock DEAD box protein A [Escherichia coli UMNK88]
          Length = 629

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 233/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++ +F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRHFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|332879243|ref|ZP_08446940.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332682663|gb|EGJ55563.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 448

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 159/435 (36%), Positives = 252/435 (57%), Gaps = 26/435 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF DL LS +V+ A+ D  + + TPIQ   IP++L+  D+ G+AQTGTGKTA+F+LP+L
Sbjct: 1   MDFYDLDLSDQVLDALDDMNFTECTPIQEHAIPVILEGRDMIGVAQTGTGKTAAFLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
           + L  G    +    +I+ PTRELA Q+    E +    N++   + GG   I +E + +
Sbjct: 61  SKLSDGGYPEKAINCIIMSPTRELAQQIDQAMEGFSYYMNVSSVAVYGGNDGIRYEQEKR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   V+DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLAMGADVIIATPGRLISHLSLGNVDLSKVSFFVLDEADRMLDMGFSDDIMQIVKYLPQE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q ++   L++P  +++       + ++  +V   AQ   K +L+++
Sbjct: 181 RQTIMFSATMPRKIQDLARTILRDPVEVKLAVSKPADKIVQSAYVCYEAQ---KVSLVKK 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   +   +  IIF + K  V ++  +L + GF V A+H +++Q+ R +++  FK   I 
Sbjct: 238 LFAERPPHRV-IIFASSKLKVKDMAIALGRAGFKVGAMHSDLEQQERDEVMYKFKAQQID 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V NFDVP+ AE+Y+HRIGRT RA   G+A TLV+++D +  
Sbjct: 297 VLVATDIVARGIDIDDIQLVINFDVPHDAEDYVHRIGRTARANNDGEAITLVSEKDQQRF 356

Query: 358 DAIEKLIEKKVDWLN-----GDLSSLNPPL--EKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            +IE  +E +++        G+  +  P    EK    + N   +N        G+ RR 
Sbjct: 357 ASIEHFLETEIEKRPLPEGLGEGPAYRPKEGGEKRYGGRRNQGHRN--------GYKRRN 408

Query: 411 KNYS----SQKSHIP 421
           KN S    SQK   P
Sbjct: 409 KNQSKEGQSQKKARP 423


>gi|261755014|ref|ZP_05998723.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|261744767|gb|EEY32693.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
          Length = 517

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 155/386 (40%), Positives = 230/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 103 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 162

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 163 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 222

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 223 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 282

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I    V       +K  LL  +L 
Sbjct: 283 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 340

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 341 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 399

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 400 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 458

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 459 AVERVTRSKLSIKDAPVKLAPAPVAK 484


>gi|330820807|ref|YP_004349669.1| DEAD/DEAH box helicase [Burkholderia gladioli BSR3]
 gi|327372802|gb|AEA64157.1| DEAD/DEAH box helicase [Burkholderia gladioli BSR3]
          Length = 459

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 153/370 (41%), Positives = 224/370 (60%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  + +  Y  PTP+Q K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIAPLLRNLQELNYQTPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLL 60

Query: 61  T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +++ G A      R L+L PTRELA Q+  +F  YGK  +L      GG+    Q  K
Sbjct: 61  QRLVQHGPAVASNRARVLVLVPTRELAEQLLQSFVDYGKGLDLRFLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPERR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++ N L+ P  I V+ P++TA  I   +V T  + +K    +   
Sbjct: 181 QTLLFSATFSDEIRAMAANILRKPVDISVSAPNATASKIRQ-WVVTVDKRNKPELFMH-- 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +++  ++ ++F   +  V  L   LE+ G++V  IHG+  Q +R++ L  FK   IQ+
Sbjct: 238 LVARNKWEHALVFAKTRNGVDYLAAVLEQAGYAVDTIHGDKPQPARLRALERFKAREIQM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEKKV 368
           AIE LI + +
Sbjct: 358 AIEALIRQTL 367


>gi|191168055|ref|ZP_03029855.1| cold-shock DEAD box protein A [Escherichia coli B7A]
 gi|218555734|ref|YP_002388647.1| ATP-dependent RNA helicase DeaD [Escherichia coli IAI1]
 gi|260857291|ref|YP_003231182.1| ATP-dependent RNA helicase DeaD [Escherichia coli O26:H11 str.
           11368]
 gi|260869914|ref|YP_003236316.1| ATP-dependent RNA helicase DeaD [Escherichia coli O111:H- str.
           11128]
 gi|293449499|ref|ZP_06663920.1| ATP-dependent RNA helicase DeaD [Escherichia coli B088]
 gi|190901924|gb|EDV61673.1| cold-shock DEAD box protein A [Escherichia coli B7A]
 gi|218362502|emb|CAR00126.1| ATP-dependent RNA helicase [Escherichia coli IAI1]
 gi|257755940|dbj|BAI27442.1| ATP-dependent RNA helicase DeaD [Escherichia coli O26:H11 str.
           11368]
 gi|257766270|dbj|BAI37765.1| ATP-dependent RNA helicase DeaD [Escherichia coli O111:H- str.
           11128]
 gi|291322589|gb|EFE62018.1| ATP-dependent RNA helicase DeaD [Escherichia coli B088]
 gi|323154376|gb|EFZ40577.1| cold-shock DEAD box protein A [Escherichia coli EPECa14]
 gi|323178875|gb|EFZ64451.1| cold-shock DEAD box protein A [Escherichia coli 1180]
 gi|323183117|gb|EFZ68515.1| cold-shock DEAD box protein A [Escherichia coli 1357]
          Length = 629

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|325522216|gb|EGD00856.1| DEAD/DEAH box helicase [Burkholderia sp. TJI49]
          Length = 480

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 152/368 (41%), Positives = 222/368 (60%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  + D  Y  PTP+Q K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIGPLLRNLQDLNYQTPTPVQAKAIPAVLGGQDVMAAAQTGTGKTAGFALPLL 60

Query: 61  T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +++ G A      R L+L PTRELA QV  +F  YGK  +L      GG+    Q  K
Sbjct: 61  QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT TD+++ ++ N L+ P  I V+ P++TA  I   +V T  + +K    +   
Sbjct: 181 QTLLFSATFTDDIRAMAANILRAPVNISVSPPNATASKIRQ-WVVTVDKRNKPELFMH-- 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +++   + ++F   +  V  L   L++ G++V  IHG+  Q +R++ L  FK+  + +
Sbjct: 238 LVAENNWDHALVFVKTRSGVDYLAARLDEAGYAVDTIHGDKPQPARLRALERFKQREVSM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEK 366
           AIE LI +
Sbjct: 358 AIETLIRQ 365


>gi|330684829|gb|EGG96522.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU121]
          Length = 509

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 152/386 (39%), Positives = 227/386 (58%), Gaps = 19/386 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
           +F +LG+S K V  +   G+ +PTPIQ  +IP  L+ HD+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDKTVQTLESMGFKEPTPIQKDSIPYALEGHDILGQAQTGTGKTGAFGIPLIE 62

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + E+G       ++LIL PTRELA QVA+  + + K  N+ V  + GG+P E Q K L
Sbjct: 63  KVVGEQG------VQSLILAPTRELAMQVAEQLKVFSKGQNVQVVTVFGGMPIERQIKAL 116

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-R 178
           ++G  +++ TPGR++DH NR  L  N+I  L++DEAD M++MGFI  ++ I   +P   R
Sbjct: 117 KKGPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQR 176

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATM   +Q + + F++ PK I+      +   I+  +  T  +  +K       
Sbjct: 177 QTMLFSATMPKAIQTLVQQFMKTPKIIKTMNNEMSDPQIDEYY--TIVKELEKFDTFTNF 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L      +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I +
Sbjct: 235 LDVHQP-ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 293

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I 
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
            IE       D  N  +++L PP  K
Sbjct: 354 QIE-------DANNRRMTALRPPHRK 372


>gi|320175526|gb|EFW50622.1| Cold-shock DEAD-box protein A [Shigella dysenteriae CDC 74-1112]
          Length = 626

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|294670965|ref|ZP_06735821.1| hypothetical protein NEIELOOT_02671 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307452|gb|EFE48695.1| hypothetical protein NEIELOOT_02671 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 453

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 147/370 (39%), Positives = 222/370 (60%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVSSEGYENPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64

Query: 63  LEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++D    GK+  + +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIETIVEATPTDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    +NP+ +EV       +  E        ++  +  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKNPEVVEVERVDDQGKIEEQLLYCDDMRHKNR--LLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKVD 369
           IEK I++K++
Sbjct: 361 IEKYIDRKLN 370


>gi|188585530|ref|YP_001917075.1| DEAD/DEAH box helicase domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350217|gb|ACB84487.1| DEAD/DEAH box helicase domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 474

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 143/371 (38%), Positives = 228/371 (61%), Gaps = 15/371 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL+  V+ A+ + G+ + TPIQ + IP V+   D+ G AQTGTGKTA+F +P +  
Sbjct: 4   FNDLGLNDGVIKAISEMGFEETTPIQRQAIPQVMNGQDIIGQAQTGTGKTAAFGIPYI-- 61

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 R++ P     + L++ PTRELA QVA+   + G+   +T   + GG     Q K
Sbjct: 62  -----ERIQDPNNKEIKGLVVTPTRELAIQVAEEINRLGQYNGITALPIYGGQSIGHQIK 116

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++   +++ TPGR++DH NR  + +NN+ ++ +DEAD ML+MGFI  I+ I    P  
Sbjct: 117 ALKKRPQIIVGTPGRLIDHLNRKTIKLNNVNMVTLDEADEMLNMGFIEDIKTILQKTPSH 176

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTL+FSATM   ++ ++E F+ +P+ I   T   T  +IE  +V    +   K  +  +
Sbjct: 177 KQTLMFSATMPGPIKSLAEQFMNDPEIIRTKTKEITVPSIEQQYVE--VKEGDKFDVFCR 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ SQ   K  I+F   K+ V  L  +L+K+G+    IHG++ Q  R  ++ NF+ G  +
Sbjct: 235 LVDSQSPEK-AIVFGRTKRRVDELYQALKKRGYFAEGIHGDMPQTKRDHVIKNFRTGATE 293

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+D+A+RGLD+  + H++NFD+P  A++Y+HRIGRTGRAG+ G A TLV   +  H+
Sbjct: 294 LLVATDVASRGLDVTGISHIYNFDIPQDADSYVHRIGRTGRAGQSGAAVTLVTPREKGHL 353

Query: 358 DAIEKLIEKKV 368
           + IE+ I++++
Sbjct: 354 NLIEQSIKRQI 364


>gi|300938072|ref|ZP_07152850.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 21-1]
 gi|300456932|gb|EFK20425.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 21-1]
          Length = 646

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 25  FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 85  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 379 RTMKLTIPEVELPNAEL 395


>gi|218701933|ref|YP_002409562.1| ATP-dependent RNA helicase DeaD [Escherichia coli IAI39]
 gi|218371919|emb|CAR19775.1| ATP-dependent RNA helicase [Escherichia coli IAI39]
          Length = 629

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|309810396|ref|ZP_07704230.1| DEAD-box ATP-dependent RNA helicase CshA [Dermacoccus sp. Ellin185]
 gi|308435636|gb|EFP59434.1| DEAD-box ATP-dependent RNA helicase CshA [Dermacoccus sp. Ellin185]
          Length = 537

 Score =  279 bits (714), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 155/413 (37%), Positives = 235/413 (56%), Gaps = 23/413 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD G+ P +V A+ + G V P PIQ  T+P+ L  HD+ G A+TGTGKT  F +P+L+ 
Sbjct: 34  FADFGIHPDIVAALEEKGIVHPFPIQAMTLPVALSGHDIIGQARTGTGKTLGFGVPLLSR 93

Query: 63  L----EKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           +    E  +A V  P    + +++ PTRELA QVA + E   K   + +A + GG  FE 
Sbjct: 94  VTAPGETSKAAVPAPEGKPQAMVVVPTRELAVQVASDLEAAAKKRGIRIAQIYGGRAFEP 153

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++LE+G +V++ TPGRI+D   RG L +  +  LV+DEAD MLD+GF+P ++ I ++ 
Sbjct: 154 QVERLEKGVEVIVGTPGRIIDLATRGHLDLAYVGCLVLDEADEMLDLGFLPDVEKILAMT 213

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIE-VNTPSSTAETIEHCFVATY-AQYSKKC 232
           P  RQT+LFSATM   +  ++  ++  P  I  +   +S AET  +     Y A    K 
Sbjct: 214 PGGRQTMLFSATMPGAVVTLARRYMTQPTHIRAMQDDASEAETASNIEQFVYRAHAMDKV 273

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            +L ++LQ++D     IIF   K+    +   L  +GF+   +HG++ Q +R + L  F+
Sbjct: 274 EMLARILQAKDRGLT-IIFSRTKRTAAKVSDELISRGFAAAPLHGDLGQGAREQALRAFR 332

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G + ++VA+D+AARG+D+ DV HV N+  P   + Y+HRIGRTGRAG+ G A TLV  +
Sbjct: 333 SGKVDVLVATDVAARGIDVEDVTHVINYQCPEDEKTYVHRIGRTGRAGKTGIAVTLVDWD 392

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           D+        LI K +D        L  P  +   +   H  ++  IP  +TG
Sbjct: 393 DLHRW----ALINKALD--------LGIPEPEETYSSSEHLFEDLEIPANATG 433


>gi|12517770|gb|AAG58298.1|AE005544_12 inducible ATP-independent RNA helicase [Escherichia coli O157:H7
           str. EDL933]
 gi|13363516|dbj|BAB37466.1| inducible ATP-independent RNA helicase [Escherichia coli O157:H7
           str. Sakai]
 gi|209758398|gb|ACI77511.1| inducible ATP-independent RNA helicase [Escherichia coli]
 gi|209758400|gb|ACI77512.1| inducible ATP-independent RNA helicase [Escherichia coli]
 gi|209758402|gb|ACI77513.1| inducible ATP-independent RNA helicase [Escherichia coli]
 gi|209758406|gb|ACI77515.1| inducible ATP-independent RNA helicase [Escherichia coli]
          Length = 646

 Score =  279 bits (714), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 25  FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 85  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 379 RTMKLTIPEVELPNAEL 395


>gi|161506153|ref|YP_001573265.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867500|gb|ABX24123.1| hypothetical protein SARI_04344 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 649

 Score =  279 bits (714), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 25  FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 85  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 379 RTMKLTIPEVELPNAEL 395


>gi|294852360|ref|ZP_06793033.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NVSL 07-0026]
 gi|294820949|gb|EFG37948.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NVSL 07-0026]
          Length = 488

 Score =  279 bits (714), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 155/386 (40%), Positives = 230/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGRDILGIAQTGSGKTAAFSLPILQK 148

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I    V       +K  LL  +L 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 326

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 327 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470


>gi|90408322|ref|ZP_01216486.1| ATP-dependent RNA helicase DeaD [Psychromonas sp. CNPT3]
 gi|90310553|gb|EAS38674.1| ATP-dependent RNA helicase DeaD [Psychromonas sp. CNPT3]
          Length = 579

 Score =  279 bits (714), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 142/368 (38%), Positives = 228/368 (61%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L   ++  V + GY  P+PIQ + IP +L   DV G+AQTGTGKTA+F LP+L  
Sbjct: 13  FNELNLPEALLKVVSEMGYETPSPIQAQCIPHLLNGKDVLGLAQTGTGKTAAFALPLLAN 72

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     ++ P+ L+L PTRELA QVA+ F+ Y ++     V  + GG  +  Q  +L R
Sbjct: 73  IDLS---LKAPQVLVLAPTRELAIQVAEAFQTYSRHLAGFHVMPIYGGQSYNIQFGQLRR 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGRI+DH  R  L ++N+  LV+DEAD ML MGFI  ++ I   +P   QT 
Sbjct: 130 GPQVVVGTPGRIMDHLKRKTLDLSNLTTLVLDEADEMLRMGFIDDVETIMKDMPAKHQTA 189

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240
           LFSATM D+++++++ ++ +P  +++   +ST E IE  C++    +   K   L ++L+
Sbjct: 190 LFSATMPDQIKRITKRYMNDPIEVKIKAKTSTVENIEQKCWIV---RGVNKLDALTRMLE 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++     IIF   K   V L   LE +G+   A++G+++Q++R + ++  K G + ++V
Sbjct: 247 TEE-FDGVIIFARTKTATVELAERLEARGYRSAALNGDMNQQTRERTIARLKSGGLDILV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P   E+Y+HRIGRTGRAGR GKA    A  + + + AI
Sbjct: 306 ATDVAARGLDVERISLVVNYDIPTDTESYVHRIGRTGRAGRKGKAILFAAPRERRLLKAI 365

Query: 361 EKLIEKKV 368
           E+   +++
Sbjct: 366 ERATRQEI 373


>gi|301154834|emb|CBW14297.1| ATP-dependent RNA helicase [Haemophilus parainfluenzae T3T1]
          Length = 616

 Score =  279 bits (714), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 148/371 (39%), Positives = 232/371 (62%), Gaps = 13/371 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV D G+  P+PIQ   IP +L+  DV G+AQTG+GKTA+F LP+L  
Sbjct: 7   FNDLGLPEFILKAVSDLGFETPSPIQQACIPALLEGRDVLGMAQTGSGKTAAFSLPILAK 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           ++      + P+ L++ PTRELA QVAD   +F KY K  N+    L GG  ++ Q + L
Sbjct: 67  IDPA---AKHPQLLVMAPTRELAIQVADACEHFMKYAKGINIVT--LYGGQRYDIQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  R  L ++ ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 122 KQGAQVVVGTPGRILDHIRRNTLDLSELKAIVLDEADEMLRMGFIDDVETVMAELPEEHQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQL 238
           T LFSATM + ++++++ F+ NP+ +++   +  A  IE  C+   Y Q  +K   L + 
Sbjct: 182 TALFSATMPEPIRRITKRFMNNPQEVKIKVNNDNAPDIEQNCW---YVQGFRKNDALLRF 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ +D     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ +
Sbjct: 239 LEVED-FDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + + 
Sbjct: 298 VVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLR 357

Query: 359 AIEKLIEKKVD 369
            IE L++K ++
Sbjct: 358 NIEHLMKKPIN 368


>gi|161950038|ref|YP_404825.2| ATP-dependent RNA helicase DeaD [Shigella dysenteriae Sd197]
 gi|309785489|ref|ZP_07680120.1| cold-shock DEAD box protein A [Shigella dysenteriae 1617]
 gi|308926609|gb|EFP72085.1| cold-shock DEAD box protein A [Shigella dysenteriae 1617]
          Length = 629

 Score =  279 bits (714), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GQQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|323143379|ref|ZP_08078066.1| cold-shock DEAD-box protein A [Succinatimonas hippei YIT 12066]
 gi|322416845|gb|EFY07492.1| cold-shock DEAD-box protein A [Succinatimonas hippei YIT 12066]
          Length = 683

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 231/370 (62%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L LSP V+ A+ D G+  PTPIQ + IP+++   D+ G AQTGTGKTA+F LP+L
Sbjct: 53  ISFDSLQLSPLVLQAIKDLGFESPTPIQERAIPVMMSGDDMIGQAQTGTGKTAAFALPIL 112

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           + LE     +     L+LEPTRELA QVA++F+ + ++  +  V  + GG  ++ Q + +
Sbjct: 113 SKLEPENKNIF---ALVLEPTRELALQVAESFQAFARHIEDFHVVPIYGGASYDNQIRSI 169

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA V++ TPGR++D   RGK+ ++++  +VIDEAD ML MGFI  +  I +  P  R 
Sbjct: 170 RHGAQVVVATPGRLIDLIERGKIDLSSVSYMVIDEADEMLRMGFIDDVDWILNHTPSERH 229

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++ + L  P  + + + ++TA T+   +      +  K   + ++L
Sbjct: 230 TALFSATMPEAIRRIARDHLNAPVEVRIESKTTTATTVHQRYWVVSGVH--KIDAMTRIL 287

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +      ++F   K +  ++ + L  +G +  A+HG+I QR R KI+   K G++ ++
Sbjct: 288 EVE-PYDAVLVFVRTKTDAEDVANKLMARGMACAALHGDIPQRQREKIIERLKNGSLDII 346

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  + HVFN+D+P  AE+Y+HRIGRTGRAGR G+A   V+  + + +  
Sbjct: 347 IATDVAARGLDVDRITHVFNYDIPYDAESYVHRIGRTGRAGRQGEAILFVSPRERRALRQ 406

Query: 360 IEKLIEKKVD 369
           IE++  ++++
Sbjct: 407 IERVTRQRIE 416


>gi|167622797|ref|YP_001673091.1| ATP-dependent RNA helicase SrmB [Shewanella halifaxensis HAW-EB4]
 gi|167352819|gb|ABZ75432.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 411

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 146/373 (39%), Positives = 227/373 (60%), Gaps = 14/373 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L P+++ ++   G+ KPT IQ +TIP+ +++ D+   A TGTGKTASF+LP L
Sbjct: 4   MQFEDLQLDPRLLESLKAMGHNKPTTIQQQTIPVAMEQRDILARAPTGTGKTASFLLPAL 63

Query: 61  TIL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L        GRARV     LIL PTRELA+Q+            L   ++ GG+P+  
Sbjct: 64  QHLLDFPRRYGGRARV-----LILTPTRELASQIHRYASHLATGLGLDTVIITGGVPYGP 118

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L++  D+L+ TPGR++++ ++G      +E+L+IDEADRMLDMGF   ++ I    
Sbjct: 119 QEEALQKNVDILVATPGRLMEYLDKGHFNAEEVEVLIIDEADRMLDMGFSAVVETIAIES 178

Query: 175 PFTRQTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
              +QT+LFSAT+   ++ + S   L NP ++E   P S    I H ++      + K A
Sbjct: 179 VGRKQTMLFSATLEGSDVGRFSHELLTNPVKLEAEAPRSEKAKI-HQWIHLADDKAHKFA 237

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  LL+ Q+ ++  I+F   ++ V +L   L+K+G +   + G+++Q++R + L  F +
Sbjct: 238 LLCALLK-QEEVQRTIVFVKTREAVASLEGLLQKEGITCAFMRGDMEQKARFQALGRFTK 296

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G + +++A+D+AARG+DI D+ HV NFD+P  A+ Y+HRIGRTGRAG  G A +LV   D
Sbjct: 297 GEVNILLATDVAARGIDIDDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHD 356

Query: 354 IKHIDAIEKLIEK 366
           I+ +  IE+ IE+
Sbjct: 357 IRVVGKIERYIEQ 369


>gi|38704144|ref|NP_312070.2| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           Sakai]
 gi|161367519|ref|NP_289738.2| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 EDL933]
 gi|168749243|ref|ZP_02774265.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4113]
 gi|168754142|ref|ZP_02779149.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4401]
 gi|168762127|ref|ZP_02787134.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4501]
 gi|168769579|ref|ZP_02794586.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773172|ref|ZP_02798179.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781305|ref|ZP_02806312.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786046|ref|ZP_02811053.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC869]
 gi|168797762|ref|ZP_02822769.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC508]
 gi|195938382|ref|ZP_03083764.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806131|ref|ZP_03248468.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812019|ref|ZP_03253348.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818284|ref|ZP_03258604.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400297|ref|YP_002272633.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327948|ref|ZP_03444031.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           TW14588]
 gi|254795113|ref|YP_003079950.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           TW14359]
 gi|261228174|ref|ZP_05942455.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255030|ref|ZP_05947563.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291284538|ref|YP_003501356.1| Cold-shock DEAD-box protein A [Escherichia coli O55:H7 str. CB9615]
 gi|331684811|ref|ZP_08385403.1| ATP-dependent RNA helicase DeaD [Escherichia coli H299]
 gi|32171494|sp|Q8XA87|DEAD_ECO57 RecName: Full=Cold-shock DEAD box protein A; AltName:
           Full=ATP-dependent RNA helicase deaD
 gi|187770756|gb|EDU34600.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4196]
 gi|188016396|gb|EDU54518.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4113]
 gi|189001016|gb|EDU70002.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358785|gb|EDU77204.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361392|gb|EDU79811.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4486]
 gi|189367581|gb|EDU85997.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4501]
 gi|189374042|gb|EDU92458.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC869]
 gi|189379846|gb|EDU98262.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC508]
 gi|208725932|gb|EDZ75533.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733296|gb|EDZ81983.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738407|gb|EDZ86089.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161697|gb|ACI39130.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4115]
 gi|217320315|gb|EEC28740.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           TW14588]
 gi|254594513|gb|ACT73874.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. TW14359]
 gi|290764411|gb|ADD58372.1| Cold-shock DEAD-box protein A [Escherichia coli O55:H7 str. CB9615]
 gi|320189516|gb|EFW64175.1| Cold-shock DEAD-box protein A [Escherichia coli O157:H7 str.
           EC1212]
 gi|320640234|gb|EFX09806.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           G5101]
 gi|320645531|gb|EFX14540.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H- str.
           493-89]
 gi|320650841|gb|EFX19298.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H- str. H
           2687]
 gi|320656222|gb|EFX24134.1| ATP-dependent RNA helicase DeaD [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661912|gb|EFX29320.1| ATP-dependent RNA helicase DeaD [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666747|gb|EFX33726.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326337864|gb|EGD61698.1| Cold-shock DEAD-box protein A [Escherichia coli O157:H7 str. 1125]
 gi|326347433|gb|EGD71158.1| Cold-shock DEAD-box protein A [Escherichia coli O157:H7 str. 1044]
 gi|331078426|gb|EGI49632.1| ATP-dependent RNA helicase DeaD [Escherichia coli H299]
          Length = 629

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|154496153|ref|ZP_02034849.1| hypothetical protein BACCAP_00437 [Bacteroides capillosus ATCC
           29799]
 gi|150274708|gb|EDN01772.1| hypothetical protein BACCAP_00437 [Bacteroides capillosus ATCC
           29799]
          Length = 636

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 160/368 (43%), Positives = 229/368 (62%), Gaps = 3/368 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+  ++ A+ + GY KP+PIQ K IP  L   DV G AQTGTGKT +F  P+L
Sbjct: 1   MTFRELGLTQSILKALAELGYEKPSPIQEKAIPPALAGRDVLGCAQTGTGKTCAFAAPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L       R  R+LIL PTRELA Q+ ++FE YGK+  L  A++ GG+  + Q  KL+
Sbjct: 61  QRLGGDIPAGRPIRSLILTPTRELALQIQESFEAYGKHLPLRSAVIFGGVGQQPQVDKLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+LD   +G + ++ +EI V+DEADRMLDMGF+  ++ +  L+P  +QT
Sbjct: 121 KGVDILVATPGRLLDLQGQGFVDLSRLEIFVLDEADRMLDMGFLHDVRRVLKLLPAVKQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+  +    L+NP ++ V+  SS  E I+            K  LL  L++
Sbjct: 181 LFFSATMPPEVMDLVNGLLKNPVKVAVDPVSSPVEIIDQSVY--LVDKGNKTKLLAWLVE 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +KN I+F   K     +   L K G +  AIHGN  Q +R + L++FK G ++ +V
Sbjct: 239 GLD-VKNAIVFTRTKHGANKVAGDLVKAGITAAAIHGNKSQTARQQALADFKAGKVRCLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++ HVFN+++P   E Y+HRIGRTGRAGR G A +     + +++  I
Sbjct: 298 ATDIAARGLDIEELSHVFNYNLPEVPETYVHRIGRTGRAGRGGTAVSFCDFGEQEYLKDI 357

Query: 361 EKLIEKKV 368
           EKLI +KV
Sbjct: 358 EKLIGRKV 365


>gi|320202076|gb|EFW76651.1| Cold-shock DEAD-box protein A [Escherichia coli EC4100B]
          Length = 629

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|157148730|ref|YP_001456049.1| ATP-dependent RNA helicase DeaD [Citrobacter koseri ATCC BAA-895]
 gi|157085935|gb|ABV15613.1| hypothetical protein CKO_04559 [Citrobacter koseri ATCC BAA-895]
          Length = 649

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 25  FADLGLKAPILDALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 85  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 379 RTMKLTIPEVELPNAEL 395


>gi|162138368|ref|YP_542567.2| ATP-dependent RNA helicase DeaD [Escherichia coli UTI89]
          Length = 629

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|332998804|gb|EGK18400.1| cold-shock DEAD box protein A [Shigella flexneri VA-6]
          Length = 629

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|315617245|gb|EFU97854.1| cold-shock DEAD box protein A [Escherichia coli 3431]
          Length = 632

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|317127486|ref|YP_004093768.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315472434|gb|ADU29037.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 500

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 148/373 (39%), Positives = 220/373 (58%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL + P +V A+   G+ + TPIQ K IPL  +  D+ G AQTGTGKT +F +P    
Sbjct: 4   FKDLNIQPSIVEAIEKMGFEETTPIQEKVIPLGKEGQDIIGQAQTGTGKTVAFGIP---C 60

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E+     + P+ L+L PTRELA QVA+   K G+   +    + GG     Q   L++ 
Sbjct: 61  VEQVVVEEKHPQALVLTPTRELAIQVAEELNKLGQVKGIKALPIYGGQEITRQITALKKR 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR +DH  R  +    ++I+V+DEAD ML MGFI  I+ I   VP  RQTLL
Sbjct: 121 PQIIVATPGRYMDHMRRKTIRPEFLKIVVLDEADEMLSMGFIEDIETILQEVPGERQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA--TYAQYSKKCALLQQLLQ 240
           FSATM  +L+ +++ F+  P  I V     T E IE  ++A     ++   C LL     
Sbjct: 181 FSATMPPKLKTIADRFMNKPVSIAVKAKQLTVENIEQRYIALSEKEKFDTLCNLL----- 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +T +  IIF   K+ V  L  SL  +GF+V  +HG++ Q  R +++  FK G+I +MV
Sbjct: 236 DMETPELAIIFGRTKRRVDELTESLSIRGFAVEGLHGDMKQERRDQVIRKFKRGSIDVMV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HV NFD+P  +E+Y+HRIGRTGRAG+ G +++ V  ++  H+  I
Sbjct: 296 ATDVAARGLDVNDVSHVINFDLPQDSESYVHRIGRTGRAGKKGISYSFVTHKEKDHLRYI 355

Query: 361 EKLIEKKVDWLNG 373
           E+   +K+  ++ 
Sbjct: 356 EESTRQKMKQVDA 368


>gi|46580391|ref|YP_011199.1| ATP-dependent RNA helicase RhlE [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449808|gb|AAS96458.1| ATP-dependent RNA helicase RhlE [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311233634|gb|ADP86488.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1]
          Length = 462

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 147/365 (40%), Positives = 215/365 (58%), Gaps = 8/365 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADL LSP+++ A+   GY +PTP+Q   IP  L   DV  +A TGTGKTA+FVLPML
Sbjct: 1   MTFADLSLSPRLLAALDGMGYRQPTPVQRGAIPPALAGEDVLALAATGTGKTAAFVLPML 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G R  VR    L++ PTRELA Q  D+  + G    L    + GG+   AQ  +L
Sbjct: 61  QRLMDGPRGAVR---ALVVAPTRELAEQTHDHVRRLGSMSRLRSTTIYGGVGVVAQALRL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G +V++  PGR+LDH  RG L ++++E+LV+DE D + D+GF+  ++ +  +VP T Q
Sbjct: 118 RAGVEVVVGCPGRLLDHIRRGNLDLSSLEVLVLDEGDSLFDLGFLADVRMLLGMVPATCQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM D ++ ++   L+ P  ++V+     A T+ H      A    +  LL+  L
Sbjct: 178 RMLFSATMPDAVRVLAAEALRQPVTVQVDA-VQPASTVHHALYPVPAHL--RTPLLKTFL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +S     + ++F   +     L   L+  GFSV  + G + QR R+  L  F++G   ++
Sbjct: 235 RSGPE-GSVVVFVRTRHGARRLWQQLDNVGFSVTCLQGKLSQRRRLAALEGFRDGRYDVL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV N+DVP+ A+ YIHR+GRTGRA R+G A T V   D   +  
Sbjct: 294 VATDVAARGLDISQVTHVVNYDVPSTADAYIHRVGRTGRAARNGTAMTFVTPADEAQVRN 353

Query: 360 IEKLI 364
           IE+++
Sbjct: 354 IERVL 358


>gi|89109927|ref|AP_003707.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111550|ref|NP_417631.2| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|110643403|ref|YP_671133.1| ATP-dependent RNA helicase DeaD [Escherichia coli 536]
 gi|161485815|ref|NP_708963.3| ATP-dependent RNA helicase DeaD [Shigella flexneri 2a str. 301]
 gi|161486111|ref|NP_755783.2| ATP-dependent RNA helicase DeaD [Escherichia coli CFT073]
 gi|161486429|ref|NP_838673.2| ATP-dependent RNA helicase DeaD [Shigella flexneri 2a str. 2457T]
 gi|161984848|ref|YP_409545.2| ATP-dependent RNA helicase DeaD [Shigella boydii Sb227]
 gi|161986443|ref|YP_312118.2| ATP-dependent RNA helicase DeaD [Shigella sonnei Ss046]
 gi|170018586|ref|YP_001723540.1| ATP-dependent RNA helicase DeaD [Escherichia coli ATCC 8739]
 gi|170082699|ref|YP_001732019.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170684314|ref|YP_001745436.1| ATP-dependent RNA helicase DeaD [Escherichia coli SMS-3-5]
 gi|191172194|ref|ZP_03033737.1| cold-shock DEAD box protein A [Escherichia coli F11]
 gi|193062213|ref|ZP_03043309.1| cold-shock DEAD box protein A [Escherichia coli E22]
 gi|194427708|ref|ZP_03060255.1| cold-shock DEAD box protein A [Escherichia coli B171]
 gi|194438758|ref|ZP_03070844.1| cold-shock DEAD box protein A [Escherichia coli 101-1]
 gi|215488480|ref|YP_002330911.1| ATP-dependent RNA helicase DeaD [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218550447|ref|YP_002384238.1| ATP-dependent RNA helicase DeaD [Escherichia fergusonii ATCC 35469]
 gi|218560234|ref|YP_002393147.1| ATP-dependent RNA helicase DeaD [Escherichia coli S88]
 gi|218691454|ref|YP_002399666.1| ATP-dependent RNA helicase DeaD [Escherichia coli ED1a]
 gi|218696869|ref|YP_002404536.1| ATP-dependent RNA helicase DeaD [Escherichia coli 55989]
 gi|238902266|ref|YP_002928062.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|253772002|ref|YP_003034833.1| ATP-dependent RNA helicase DeaD [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163106|ref|YP_003046214.1| ATP-dependent RNA helicase DeaD [Escherichia coli B str. REL606]
 gi|256018918|ref|ZP_05432783.1| ATP-dependent RNA helicase DeaD [Shigella sp. D9]
 gi|256024262|ref|ZP_05438127.1| ATP-dependent RNA helicase DeaD [Escherichia sp. 4_1_40B]
 gi|260845977|ref|YP_003223755.1| ATP-dependent RNA helicase DeaD [Escherichia coli O103:H2 str.
           12009]
 gi|293416596|ref|ZP_06659235.1| ATP-dependent RNA helicase DeaD [Escherichia coli B185]
 gi|301025993|ref|ZP_07189475.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 196-1]
 gi|306816494|ref|ZP_07450626.1| ATP-dependent RNA helicase DeaD [Escherichia coli NC101]
 gi|307139849|ref|ZP_07499205.1| ATP-dependent RNA helicase DeaD [Escherichia coli H736]
 gi|312968499|ref|ZP_07782708.1| cold-shock DEAD box protein A [Escherichia coli 2362-75]
 gi|312972567|ref|ZP_07786740.1| cold-shock DEAD box protein A [Escherichia coli 1827-70]
 gi|331659451|ref|ZP_08360393.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA206]
 gi|331664776|ref|ZP_08365681.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA143]
 gi|331669991|ref|ZP_08370836.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA271]
 gi|71154182|sp|P0A9P7|DEAD_ECOL6 RecName: Full=Cold-shock DEAD box protein A; AltName:
           Full=ATP-dependent RNA helicase deaD
 gi|71154193|sp|P0A9P6|DEAD_ECOLI RecName: Full=Cold-shock DEAD box protein A; AltName:
           Full=ATP-dependent RNA helicase deaD; AltName:
           Full=Translation factor W2
 gi|71154222|sp|P0A9P8|DEAD_SHIFL RecName: Full=Cold-shock DEAD box protein A; AltName:
           Full=ATP-dependent RNA helicase deaD
 gi|85675958|dbj|BAE77208.1| ATP-dependent RNA helicase [Escherichia coli str. K12 substr.
           W3110]
 gi|87082221|gb|AAC76196.2| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|110344995|gb|ABG71232.1| probable ATP-dependent RNA helicase DeaD [Escherichia coli 536]
 gi|169753514|gb|ACA76213.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
 gi|169890534|gb|ACB04241.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170522032|gb|ACB20210.1| cold-shock DEAD box protein A [Escherichia coli SMS-3-5]
 gi|190907504|gb|EDV67100.1| cold-shock DEAD box protein A [Escherichia coli F11]
 gi|192932433|gb|EDV85031.1| cold-shock DEAD box protein A [Escherichia coli E22]
 gi|194414216|gb|EDX30491.1| cold-shock DEAD box protein A [Escherichia coli B171]
 gi|194422230|gb|EDX38231.1| cold-shock DEAD box protein A [Escherichia coli 101-1]
 gi|215266552|emb|CAS10991.1| ATP-dependent RNA helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|218353601|emb|CAU99787.1| ATP-dependent RNA helicase [Escherichia coli 55989]
 gi|218357988|emb|CAQ90634.1| ATP-dependent RNA helicase [Escherichia fergusonii ATCC 35469]
 gi|218367003|emb|CAR04774.1| ATP-dependent RNA helicase [Escherichia coli S88]
 gi|218429018|emb|CAR09825.1| ATP-dependent RNA helicase [Escherichia coli ED1a]
 gi|238860045|gb|ACR62043.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|242378707|emb|CAQ33497.1| DeaD, DEAD-box RNA helicase [Escherichia coli BL21(DE3)]
 gi|253323046|gb|ACT27648.1| DEAD/DEAH box helicase domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975007|gb|ACT40678.1| ATP-dependent RNA helicase [Escherichia coli B str. REL606]
 gi|253979163|gb|ACT44833.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
 gi|257761124|dbj|BAI32621.1| ATP-dependent RNA helicase DeaD [Escherichia coli O103:H2 str.
           12009]
 gi|260447809|gb|ACX38231.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
 gi|291431952|gb|EFF04935.1| ATP-dependent RNA helicase DeaD [Escherichia coli B185]
 gi|299879888|gb|EFI88099.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 196-1]
 gi|305850059|gb|EFM50518.1| ATP-dependent RNA helicase DeaD [Escherichia coli NC101]
 gi|307555258|gb|ADN48033.1| cold-shock DeaD box ATP-dependent RNA helicase [Escherichia coli
           ABU 83972]
 gi|307625237|gb|ADN69541.1| ATP-dependent RNA helicase DeaD [Escherichia coli UM146]
 gi|309703590|emb|CBJ02930.1| ATP-dependent RNA helicase (DEAD-box protein) [Escherichia coli
           ETEC H10407]
 gi|310332509|gb|EFP99722.1| cold-shock DEAD box protein A [Escherichia coli 1827-70]
 gi|312286717|gb|EFR14628.1| cold-shock DEAD box protein A [Escherichia coli 2362-75]
 gi|313648596|gb|EFS13038.1| cold-shock DEAD box protein A [Shigella flexneri 2a str. 2457T]
 gi|315137750|dbj|BAJ44909.1| ATP-dependent RNA helicase DeaD [Escherichia coli DH1]
 gi|320181438|gb|EFW56356.1| Cold-shock DEAD-box protein A [Shigella boydii ATCC 9905]
 gi|320194648|gb|EFW69278.1| Cold-shock DEAD-box protein A [Escherichia coli WV_060327]
 gi|323162856|gb|EFZ48691.1| cold-shock DEAD box protein A [Escherichia coli E128010]
 gi|323165120|gb|EFZ50910.1| cold-shock DEAD box protein A [Shigella sonnei 53G]
 gi|323173578|gb|EFZ59207.1| cold-shock DEAD box protein A [Escherichia coli LT-68]
 gi|323189215|gb|EFZ74499.1| cold-shock DEAD box protein A [Escherichia coli RN587/1]
 gi|323936142|gb|EGB32436.1| DEAD/DEAH box helicase [Escherichia coli E1520]
 gi|323941736|gb|EGB37915.1| DEAD/DEAH box helicase [Escherichia coli E482]
 gi|323951318|gb|EGB47193.1| DEAD/DEAH box helicase [Escherichia coli H252]
 gi|323957689|gb|EGB53403.1| DEAD/DEAH box helicase [Escherichia coli H263]
 gi|323961066|gb|EGB56681.1| DEAD/DEAH box helicase [Escherichia coli H489]
 gi|323966344|gb|EGB61778.1| DEAD/DEAH box helicase [Escherichia coli M863]
 gi|323970273|gb|EGB65544.1| DEAD/DEAH box helicase [Escherichia coli TA007]
 gi|323979119|gb|EGB74197.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
 gi|324115232|gb|EGC09196.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
 gi|324119529|gb|EGC13411.1| DEAD/DEAH box helicase [Escherichia coli E1167]
 gi|325498745|gb|EGC96604.1| ATP-dependent RNA helicase [Escherichia fergusonii ECD227]
 gi|327251943|gb|EGE63629.1| cold-shock DEAD box protein A [Escherichia coli STEC_7v]
 gi|330909220|gb|EGH37734.1| cold-shock DEAD-box protein A [Escherichia coli AA86]
 gi|331054033|gb|EGI26062.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA206]
 gi|331058024|gb|EGI30006.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA143]
 gi|331062904|gb|EGI34818.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA271]
 gi|332086106|gb|EGI91268.1| cold-shock DEAD box protein A [Shigella boydii 5216-82]
 gi|332090717|gb|EGI95811.1| cold-shock DEAD box protein A [Shigella boydii 3594-74]
 gi|332752322|gb|EGJ82712.1| cold-shock DEAD box protein A [Shigella flexneri 4343-70]
 gi|332752849|gb|EGJ83234.1| cold-shock DEAD box protein A [Shigella flexneri K-671]
 gi|332754390|gb|EGJ84756.1| cold-shock DEAD box protein A [Shigella flexneri 2747-71]
 gi|332765159|gb|EGJ95386.1| csdA, DEAD-box RNA helicase [Shigella flexneri 2930-71]
 gi|332999241|gb|EGK18827.1| cold-shock DEAD box protein A [Shigella flexneri K-272]
 gi|333000407|gb|EGK19990.1| cold-shock DEAD box protein A [Shigella flexneri K-218]
 gi|333014540|gb|EGK33887.1| cold-shock DEAD box protein A [Shigella flexneri K-304]
 gi|333014963|gb|EGK34307.1| cold-shock DEAD box protein A [Shigella flexneri K-227]
          Length = 629

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|312881457|ref|ZP_07741251.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370879|gb|EFP98337.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 620

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 162/461 (35%), Positives = 258/461 (55%), Gaps = 35/461 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+   G+V PTPIQ  +IP +++  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNDAILSALDGMGFVSPTPIQAASIPHLMKGSDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             LE  +   R P+ ++L PTRELA QVA   +  G+N + L V  + GG     Q + L
Sbjct: 66  NKLELSQ---RKPQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGTSIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D  NR +L ++ +   V+DEAD ML+MGF+  +  I    P + Q
Sbjct: 123 KSGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTAIMEHAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   L+ + E FL+NP  I+V   + T + +E  F        +K   + +LL
Sbjct: 183 RVLFSATMPPMLKNIVERFLRNPITIDVAGKNHTVDKVEQQFWVVKG--VEKDEAMSRLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    ++ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRT 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE++ +  ++ +        P  +K+  A+                 ++      ++K H
Sbjct: 360 IERVTKSTMEEIQ------LPHRDKVAAAR----------------LEKLGAELETEKEH 397

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
             L++  ++ +  QD  E DA +L       A +L + +GK
Sbjct: 398 KALEKFTELVEKLQDTLELDAATLA------AILLKRQQGK 432


>gi|255527323|ref|ZP_05394201.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|255508970|gb|EET85332.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
          Length = 527

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 150/369 (40%), Positives = 221/369 (59%), Gaps = 12/369 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L  KV+ A+   G+ +P+ IQ + IP++L  +D+ G AQTGTGKT +F  P+L+ 
Sbjct: 6   FSDLNLHKKVLQAIDAMGFEEPSQIQAEAIPVILSGNDMIGQAQTGTGKTLAFGAPVLSQ 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E           L+L PTRELA QV D   +  K     +  + GG P + Q K L RG
Sbjct: 66  IESSDK----ISALVLTPTRELAIQVNDELARIAKFKRTKLLPVYGGQPIDRQIKSLRRG 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGRILDH  R  L ++ +  LV+DE+D ML+MGFI  I+ I   +   RQTLL
Sbjct: 122 VDVVVGTPGRILDHIKRNTLDLSGVNFLVLDESDEMLNMGFIDDIEEIIKSLNKDRQTLL 181

Query: 183 FSATMTDELQKVSENFLQNP-KRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           FSATM  E+ K++  +++N  K I++   S T E I+  +  V    ++   C +L    
Sbjct: 182 FSATMPKEIAKLASKYMKNEVKHIKIVKNSLTVEKIKQYYYEVKHKDRFESLCRIL---- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D   + IIFC  K+ V  L  S++ +G++V  +HG++ Q  R+  L  FKEGT+  +
Sbjct: 238 -DIDEPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGTLDFL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV HV N+D+P   E+Y+HRIGRTGRA + G A++LV   +   I  
Sbjct: 297 VATDVAARGIDVDDVSHVINYDLPQDMESYVHRIGRTGRANKEGIAYSLVTPREYIMIKQ 356

Query: 360 IEKLIEKKV 368
           +EK  + K+
Sbjct: 357 LEKFTKSKI 365


>gi|239637375|ref|ZP_04678357.1| cold-shock DEAD box protein A [Staphylococcus warneri L37603]
 gi|239596975|gb|EEQ79490.1| cold-shock DEAD box protein A [Staphylococcus warneri L37603]
          Length = 509

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 152/386 (39%), Positives = 227/386 (58%), Gaps = 19/386 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
           +F +LG+S K V  +   G+ +PTPIQ  +IP  L+ HD+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDKTVQTLESMGFKEPTPIQKDSIPYALEGHDILGQAQTGTGKTGAFGIPLIE 62

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + E+G       ++LIL PTRELA QVA+  + + K  N+ V  + GG+P E Q K L
Sbjct: 63  KVVGEQG------VQSLILAPTRELAMQVAEQLKVFSKGQNVQVVTVFGGMPIERQIKAL 116

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-R 178
           ++G  +++ TPGR++DH NR  L  N+I  L++DEAD M++MGFI  ++ I   +P   R
Sbjct: 117 KKGPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQR 176

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATM   +Q + + F++ PK I+      +   I+  +  T  +  +K       
Sbjct: 177 QTMLFSATMPKAIQTLVQQFMKTPKIIKTMNNEMSDPQIDEYY--TIVKELEKFDTFTNF 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L      +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I +
Sbjct: 235 LDVHQP-ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 293

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I 
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
            IE       D  N  +++L PP  K
Sbjct: 354 QIE-------DANNRRMTALRPPHRK 372


>gi|330811885|ref|YP_004356347.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379993|gb|AEA71343.1| Putative ATP-dependent RNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 445

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 151/368 (41%), Positives = 219/368 (59%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + +P VL   D+   AQTGTGKTA F +P+L
Sbjct: 1   MTFATLGLIEPLLRALETLGYQTPTPVQAQAMPAVLAGRDLMAAAQTGTGKTAGFAVPLL 60

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L  E  +      R LIL PTRELA QV ++  +Y +N  L+   + GG+    Q  K
Sbjct: 61  QLLTTEGPKVAANSVRALILVPTRELAEQVHESVRQYAQNLPLSTYAVYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD F +  L  N ++ LV+DEADRMLD+GF   + NI   +P  R
Sbjct: 121 LRKGVDLLVATPGRLLDLFRQNALKFNQLQTLVLDEADRMLDLGFSEELANIYKALPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D ++ ++   L +P  IEV+  +  A T++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDAIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVTV--DKKRKPELFVHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ ++  +  ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +Q+
Sbjct: 239 MR-KNKWRQVLVFAKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKASEVQI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V NFD+P  AE+YIHRIGRTGRAG  G+A +LV  +++  + 
Sbjct: 298 LVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADEVNLLS 357

Query: 359 AIEKLIEK 366
           AIE L  +
Sbjct: 358 AIEMLTRQ 365


>gi|307313131|ref|ZP_07592757.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|306907042|gb|EFN37550.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|315062470|gb|ADT76797.1| ATP-dependent RNA helicase [Escherichia coli W]
 gi|323376942|gb|ADX49210.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11]
          Length = 629

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|182415515|ref|YP_001820581.1| DEAD/DEAH box helicase domain-containing protein [Opitutus terrae
           PB90-1]
 gi|177842729|gb|ACB76981.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
          Length = 594

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 149/378 (39%), Positives = 229/378 (60%), Gaps = 9/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLSP+++ AV   G+ +  PIQ   IP VL   DV G++ TG+GKT +F +P L  
Sbjct: 6   FAELGLSPEILRAVDKMGFEEAAPIQAAVIPTVLGGRDVVGVSSTGSGKTVAFAIPAL-- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLER 121
            E+   ++R  + L+L PTRELA QVA+      +     + + I GG  +E Q + L  
Sbjct: 64  -ERVDPKLRAVQVLVLCPTRELAVQVAEEMGHLAQFKRGIMGVPIYGGQSYERQYRALAA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G+ V+I TPGR++DH  RG L +  ++++V+DEADRMLDMGF   I+ I S VP  RQ L
Sbjct: 123 GSQVVIGTPGRVMDHMERGTLKLGALKLVVLDEADRMLDMGFREDIEKILSAVPVPRQLL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   +Q++ +   ++P  I++   +  A  +E  +         K   L +L+  
Sbjct: 183 FFSATMPRPIQELIKRTARDPAWIKIEAVAQNAPQVEQIYFEV--DRRSKLEALTRLIDV 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D  + GI+FC+ K  V +L   L  +G++V  +HG++ Q  R +++  F+    + ++A
Sbjct: 241 HD-FRYGIVFCSTKVMVDDLDEHLHARGYAVDRLHGDLSQTQRDRVMDKFRRRGFEFLIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ D+  VFN+D+PN AE+Y HRIGRTGRAG+ G+AFT V+ ++I  + A+ 
Sbjct: 300 TDVAARGLDVDDLEVVFNYDLPNDAEDYTHRIGRTGRAGKSGRAFTFVSGQEIYKLQAMV 359

Query: 362 KLIEKKVDWLNGDLSSLN 379
           +    K+D   G L SL+
Sbjct: 360 RW--AKLDLRRGRLPSLD 375


>gi|90416373|ref|ZP_01224305.1| ATP-dependent RNA helicase DeaD [marine gamma proteobacterium
           HTCC2207]
 gi|90332098|gb|EAS47312.1| ATP-dependent RNA helicase DeaD [marine gamma proteobacterium
           HTCC2207]
          Length = 619

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 147/375 (39%), Positives = 230/375 (61%), Gaps = 11/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DFA LG+S  V+ AV   GY +P+P+Q  +IP++L+  ++ G AQTGTGKTA+F LP L
Sbjct: 4   VDFASLGISAPVLKAVQQLGYEQPSPVQEASIPILLEGKNLLGTAQTGTGKTAAFALPFL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           + L++   + + P+ L+L PTRELA QVA+ F+ Y K+     V  + GG     Q + L
Sbjct: 64  SKLDE---KQKTPQVLVLTPTRELAIQVAEAFQSYAKHIKGFHVLPIYGGADIGGQLRGL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA V++ TPGR+LDH  R  L ++ I+ L++DEAD ML MGFI  ++ I +  P   Q
Sbjct: 121 KRGAQVVVGTPGRMLDHLRRRSLDLSQIKGLILDEADEMLRMGFIDDVETILAKTPPECQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQ 237
             LFSATM   +++V++ +L + + + +   + T E I   H  V  + +      +L  
Sbjct: 181 RTLFSATMPPAIKRVADKYLGDAEVVSIENKTKTVERIAQSHLMVKGHQKMDALTRILD- 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            ++  D M   IIF   K + + +   LE +GFS  A++G++ Q  R + ++  K+G + 
Sbjct: 240 -VEQFDGM---IIFVRTKSSTLEIAEKLEARGFSSAALNGDLTQTVRERTINRLKKGQLD 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  + HV N+DVP   E+Y+HRIGRTGRAGR GKA   V +++ + +
Sbjct: 296 IVVATDVAARGLDVERISHVINYDVPYDNESYVHRIGRTGRAGREGKAIMFVTQKETRML 355

Query: 358 DAIEKLIEKKVDWLN 372
            +IEK   + +   N
Sbjct: 356 RSIEKSTRQPISSFN 370


>gi|33152628|ref|NP_873981.1| ATP-dependent RNA helicase [Haemophilus ducreyi 35000HP]
 gi|33148852|gb|AAP96370.1| cold-shock DEAD box protein-A [Haemophilus ducreyi 35000HP]
          Length = 606

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 142/370 (38%), Positives = 231/370 (62%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DLGL   ++ AV D  +V P+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 6   LTFSDLGLPQSILDAVNDMSFVTPSPIQQECIPHLLAGSDVLGMAQTGSGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             ++  +   R P+ L++ PTRELA QVAD  E++ KN   + V  + GG  ++ Q + L
Sbjct: 66  AQIDPNQ---RHPQMLVMAPTRELAIQVADACEQFTKNMKGIRVVTVYGGQRYDIQLRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G+ V++ TPGRILDH  RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 KQGSQVVVGTPGRILDHIRRGTLNLSTLKSIVLDEADEMLRMGFIDDVETVMAELPEKHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+ +PK +++     +A  I   +      + K  ALL+ L 
Sbjct: 183 TALFSATMPEPIRRITRRFMSDPKEVKIQATQRSAPDITQSYWLVNG-FRKNEALLRFL- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++    E+ G+   A++G++ Q++R + L   K G + ++
Sbjct: 241 -EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 300 VATDVAARGLDVERISLVVNYDIPLDSESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359

Query: 360 IEKLIEKKVD 369
           IE+L++K +D
Sbjct: 360 IEQLMKKPID 369


>gi|312947721|gb|ADR28548.1| ATP-dependent RNA helicase DeaD [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 629

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|311277865|ref|YP_003940096.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308747060|gb|ADO46812.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
          Length = 643

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 139/364 (38%), Positives = 226/364 (62%), Gaps = 7/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSRLSGLVLDEADEMLRMGFIEDVETIMAEIPDGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D+P   E+Y+HRIGRTGRAGR G+A   V   + + +  IE
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDTESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 362 KLIE 365
           +L++
Sbjct: 362 RLMK 365


>gi|301022016|ref|ZP_07185959.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 69-1]
 gi|300397731|gb|EFJ81269.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 69-1]
          Length = 646

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 25  FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 85  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 379 RTMKLTIPEVELPNAEL 395


>gi|209758404|gb|ACI77514.1| inducible ATP-independent RNA helicase [Escherichia coli]
          Length = 646

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 25  FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 85  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVATRPDISQSYWTVWGM--RKNEALVRFLEA 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 379 RTMKLTIPEVELPNAEL 395


>gi|163789335|ref|ZP_02183776.1| putative ATP-dependent RNA helicase [Flavobacteriales bacterium
           ALC-1]
 gi|159875403|gb|EDP69466.1| putative ATP-dependent RNA helicase [Flavobacteriales bacterium
           ALC-1]
          Length = 411

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 151/372 (40%), Positives = 234/372 (62%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL   +  A+  +GYV+PT +Q + IP +L + DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFKDLGLIKPLQKAIEASGYVEPTLVQQRAIPPILDKKDVIVSAQTGTGKTAAFALPIL 60

Query: 61  TIL---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L   +    R +  + LI+ PTRELA Q+  NF+ Y +  NL   ++ GG   E Q  
Sbjct: 61  QQLFDQQDAPKRGKKIKALIISPTRELAVQIQQNFKTYAQFTNLRSLVIFGGTSIEPQID 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+L+ TPGR+LD   +  + +++IE  V+DEAD ML MGFI  ++ I  L P  
Sbjct: 121 VLKKGIDILVATPGRLLDLHKQDYVNLDHIETFVLDEADLMLAMGFIDDVKKIERLCPEN 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTLLFSAT+  ++++++   L++P+RI+V    S A+ +    +  Y     K  L   
Sbjct: 181 KQTLLFSATIPYKIEQLASGILKDPERIDVTPTRSVAKDVSQ--ILYYVPKRNKIELCLH 238

Query: 238 LLQSQDTMK-NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+  ++T+K N +IF   K  V  L  +L K G++V +IHG+ +Q  R   L+ FK G +
Sbjct: 239 LM--RNTIKGNVLIFRRTKFGVNKLEQTLLKNGYTVDSIHGDKNQSDRQTALNKFKNGYV 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++A+D+AARG+DI ++ +VFNFD+PN+AE Y+HRIGRTGRAG  GKA+ + + ++  +
Sbjct: 297 KVLIATDVAARGIDIDELDNVFNFDMPNQAETYVHRIGRTGRAGNIGKAYAMCSADEKSY 356

Query: 357 IDAIEKLIEKKV 368
           +  IE+ I  ++
Sbjct: 357 VKIIEQYINVQI 368


>gi|81242624|gb|ABB63334.1| inducible ATP-independent RNA helicase [Shigella dysenteriae Sd197]
          Length = 646

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 25  FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 85  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 142 GQQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 379 RTMKLTIPEVELPNAEL 395


>gi|293406774|ref|ZP_06650700.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1412]
 gi|298382514|ref|ZP_06992111.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1302]
 gi|300897926|ref|ZP_07116305.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 198-1]
 gi|291426780|gb|EFE99812.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1412]
 gi|298277654|gb|EFI19170.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1302]
 gi|300358356|gb|EFJ74226.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 198-1]
          Length = 650

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 25  FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 85  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 379 RTMKLTIPEVELPNAEL 395


>gi|117625458|ref|YP_858781.1| ATP-dependent RNA helicase DeaD [Escherichia coli APEC O1]
 gi|209920639|ref|YP_002294723.1| ATP-dependent RNA helicase DeaD [Escherichia coli SE11]
 gi|227887886|ref|ZP_04005691.1| ATP-dependent RNA helicase DeaD [Escherichia coli 83972]
 gi|300817586|ref|ZP_07097802.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 107-1]
 gi|300904348|ref|ZP_07122201.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 84-1]
 gi|300918917|ref|ZP_07135476.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 115-1]
 gi|300926099|ref|ZP_07141917.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 182-1]
 gi|300948811|ref|ZP_07162879.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 116-1]
 gi|300955748|ref|ZP_07168093.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 175-1]
 gi|300977829|ref|ZP_07174069.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 200-1]
 gi|300990761|ref|ZP_07179333.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 45-1]
 gi|301301782|ref|ZP_07207916.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 124-1]
 gi|301326415|ref|ZP_07219769.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 78-1]
 gi|301644873|ref|ZP_07244845.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 146-1]
 gi|606102|gb|AAA57965.1| two frameshifts relative to ECODEAD [Escherichia coli str. K-12
           substr. MG1655]
 gi|30042761|gb|AAP18484.1| inducible ATP-independent RNA helicase [Shigella flexneri 2a str.
           2457T]
 gi|56383827|gb|AAN44670.2| inducible ATP-independent RNA helicase [Shigella flexneri 2a str.
           301]
 gi|73857176|gb|AAZ89883.1| inducible ATP-independent RNA helicase [Shigella sonnei Ss046]
 gi|81247009|gb|ABB67717.1| inducible ATP-independent RNA helicase [Shigella boydii Sb227]
 gi|115514582|gb|ABJ02657.1| inducible ATP-independent RNA helicase [Escherichia coli APEC O1]
 gi|209913898|dbj|BAG78972.1| RNA helicase [Escherichia coli SE11]
 gi|227835282|gb|EEJ45748.1| ATP-dependent RNA helicase DeaD [Escherichia coli 83972]
 gi|281180206|dbj|BAI56536.1| RNA helicase [Escherichia coli SE15]
 gi|300308206|gb|EFJ62726.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 200-1]
 gi|300317381|gb|EFJ67165.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 175-1]
 gi|300403699|gb|EFJ87237.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 84-1]
 gi|300407069|gb|EFJ90607.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 45-1]
 gi|300413943|gb|EFJ97253.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 115-1]
 gi|300417864|gb|EFK01175.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 182-1]
 gi|300451700|gb|EFK15320.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 116-1]
 gi|300529884|gb|EFK50946.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 107-1]
 gi|300842763|gb|EFK70523.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 124-1]
 gi|300846904|gb|EFK74664.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 78-1]
 gi|301076818|gb|EFK91624.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 146-1]
 gi|315257088|gb|EFU37056.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 85-1]
 gi|315288936|gb|EFU48334.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 110-3]
 gi|315294907|gb|EFU54246.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 153-1]
 gi|315297886|gb|EFU57156.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 16-3]
 gi|324008761|gb|EGB77980.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 57-2]
 gi|324012112|gb|EGB81331.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 60-1]
 gi|324018314|gb|EGB87533.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 117-3]
          Length = 646

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 25  FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 85  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 379 RTMKLTIPEVELPNAEL 395


>gi|293391610|ref|ZP_06635944.1| preprotein translocase subunit SecF [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952144|gb|EFE02263.1| preprotein translocase subunit SecF [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 595

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 148/373 (39%), Positives = 232/373 (62%), Gaps = 13/373 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL   ++ AV D G+  P+PIQ   IP +L+  DV G+AQTG+GKTA+F LP+L
Sbjct: 1   MTFMDLGLPEFILNAVSDLGFETPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117
             ++      + P+ L++ PTRELA QVAD    F KY K  N+    L GG  ++ Q +
Sbjct: 61  AKIDPNE---KHPQLLVMAPTRELAIQVADACEQFMKYAKGINIVT--LYGGQRYDIQLR 115

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++GA V++ TPGRILDH  RG L +  ++ +V+DEAD ML MGFI  ++ + + +P  
Sbjct: 116 ALKQGAQVVVGTPGRILDHIRRGTLNLAELKAIVLDEADEMLRMGFIEDVETVMAELPEH 175

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
            QT LFSATM + ++++++ F+++P+ I++     +A  I + C+   Y    +K   L 
Sbjct: 176 HQTALFSATMPEPIRRITKRFMKDPQEIKIKATQQSAPDIAQSCW---YVHGFRKNDALL 232

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + L+ +D     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++
Sbjct: 233 RFLEVED-FDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSL 291

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + 
Sbjct: 292 DIVVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRL 351

Query: 357 IDAIEKLIEKKVD 369
           +  +E LI+K ++
Sbjct: 352 LRNVEHLIKKNIE 364


>gi|194433764|ref|ZP_03066039.1| cold-shock DEAD box protein A [Shigella dysenteriae 1012]
 gi|194418027|gb|EDX34121.1| cold-shock DEAD box protein A [Shigella dysenteriae 1012]
 gi|332086479|gb|EGI91626.1| cold-shock DEAD box protein A [Shigella dysenteriae 155-74]
          Length = 603

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|298368676|ref|ZP_06979994.1| ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282679|gb|EFI24166.1| ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 443

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 221/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64

Query: 63  LEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++D    GK+  + +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIETIVEATPSDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    +NP+ IEV       +  E        ++  +  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKNPEIIEVERVDDQGKIEEQLLYCDDMRHKNR--LLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I++K+
Sbjct: 361 IEKYIDRKL 369


>gi|297521217|ref|ZP_06939603.1| ATP-dependent RNA helicase DeaD [Escherichia coli OP50]
          Length = 569

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|331679243|ref|ZP_08379915.1| ATP-dependent RNA helicase DeaD [Escherichia coli H591]
 gi|331073308|gb|EGI44631.1| ATP-dependent RNA helicase DeaD [Escherichia coli H591]
          Length = 651

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 30  FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 90  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 147 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 207 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 265 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 324 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 383

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 384 RTMKLTIPEVELPNAEL 400


>gi|331654768|ref|ZP_08355768.1| cold-shock DEAD box protein A (ATP-dependent RNA helicasedeaD)
           [Escherichia coli M718]
 gi|331048150|gb|EGI20227.1| cold-shock DEAD box protein A (ATP-dependent RNA helicasedeaD)
           [Escherichia coli M718]
          Length = 651

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 30  FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 90  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 147 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 207 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 265 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 324 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 383

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 384 RTMKLTIPEVELPNAEL 400


>gi|261868715|ref|YP_003256637.1| cold-shock deAd box protein a [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414047|gb|ACX83418.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 595

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 148/373 (39%), Positives = 232/373 (62%), Gaps = 13/373 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL   ++ AV D G+  P+PIQ   IP +L+  DV G+AQTG+GKTA+F LP+L
Sbjct: 1   MTFMDLGLPEFILNAVSDLGFQTPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117
             ++      + P+ L++ PTRELA QVAD    F KY K  N+    L GG  ++ Q +
Sbjct: 61  AKIDPNE---KHPQLLVMAPTRELAIQVADACEQFMKYAKGINIVT--LYGGQRYDIQLR 115

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++GA V++ TPGRILDH  RG L +  ++ +V+DEAD ML MGFI  ++ + + +P  
Sbjct: 116 ALKQGAQVVVGTPGRILDHIRRGTLNLAELKAIVLDEADEMLRMGFIEDVETVMAELPEH 175

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
            QT LFSATM + ++++++ F+++P+ I++     +A  I + C+   Y    +K   L 
Sbjct: 176 HQTALFSATMPEPIRRITKRFMKDPQEIKIKATQQSAPDIAQSCW---YVHGFRKNDALL 232

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + L+ +D     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++
Sbjct: 233 RFLEVED-FDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSL 291

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + 
Sbjct: 292 DIVVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRL 351

Query: 357 IDAIEKLIEKKVD 369
           +  +E LI+K ++
Sbjct: 352 LRNVEHLIKKNIE 364


>gi|312883216|ref|ZP_07742944.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369079|gb|EFP96603.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 399

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 151/372 (40%), Positives = 220/372 (59%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL   ++ A+ + GY KPT IQ + IP  L   D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSKLGLEQPLIDAIHELGYQKPTHIQTQAIPSALSGQDLLAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G+  + +  R LIL PTRELA QV +  + YGK  +L    L GG+  +AQ + L
Sbjct: 61  QKLNAGQTQKKKRARALILTPTRELALQVEEKIQSYGKYLSLKSIALYGGVDDKAQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR+LD + +  +    IEILV+DEAD+MLDMGFI  I  I   +P   Q
Sbjct: 121 IDGIDIVVATPGRLLDLYGKRAIYFEEIEILVLDEADKMLDMGFIEGINKILDRLPRDIQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++++++ +++  + NP  I +    ++ + IE   +       KK ALL  L+
Sbjct: 181 NLLFSATLSNKVRDLAKTAVYNPYEISIAANQASKKNIEQWLITV--DKDKKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q  +     +IF   K     L   LEK+G    A H    Q  R K+L +FK G I+ +
Sbjct: 239 Q-HNNWDQALIFIETKHGAAKLASQLEKRGIYAEAFHSGRSQAIRSKLLDDFKSGEIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ + ARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA  +G+A + V+K++ K++  
Sbjct: 298 IATGVGARGIDIEGLSRVINYDLPFPADEYVHRIGRTGRADANGEAISFVSKDNFKNLCM 357

Query: 360 IEK----LIEKK 367
           IE     LIE++
Sbjct: 358 IESRLGHLIERR 369


>gi|240850851|ref|YP_002972251.1| ATP-dependent RNA helicase [Bartonella grahamii as4aup]
 gi|240267974|gb|ACS51562.1| ATP-dependent RNA helicase [Bartonella grahamii as4aup]
          Length = 460

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 157/369 (42%), Positives = 227/369 (61%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  LGL   ++  +L AG  KP PIQ + IP++L+ HD+ G+AQTG+GKT +F LP+L+ 
Sbjct: 9   FTKLGLPTLLIKNLLIAGMSKPKPIQEQAIPVMLKGHDILGVAQTGSGKTLAFGLPILSQ 68

Query: 62  ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL  G  R  +  R LIL PTRELA Q+ +      K  +L+  L+ GG+    Q K++E
Sbjct: 69  ILALGDKRCPKTARALILAPTRELAVQIDETIRTAAKGAHLSTCLIFGGVSRLKQIKRME 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D      + ++    L++DEADRMLDMGFI  ++ I  L+   RQT
Sbjct: 129 AGVDVLIATPGRLKDLVREKCVDLSQSRFLILDEADRMLDMGFIHDVKQIAKLLHQERQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  +++  L +P +IEV    +TA  +E C        ++K  +L +LL 
Sbjct: 189 ALFSATMPREIAVLAKCLLNDPVKIEVVPQGTTA--VEICQKLYCVPTNEKKNVLSKLL- 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +     + I+F   K    ++  SL K G+SV  IHGN  Q +R   L  F+E ++Q++V
Sbjct: 246 TNPAFNSVIVFTRTKHGADSVTRSLAKIGYSVATIHGNKSQGARQSALKAFRERSVQILV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           A+D+AARG+DIP + HV N+D+P+ AE+Y+HRIGRTGR G  G+A TL   K + + + A
Sbjct: 306 ATDIAARGIDIPGISHVINYDLPDEAESYVHRIGRTGRNGASGEALTLFDEKIERERLRA 365

Query: 360 IEKLIEKKV 368
           IE+LI  K+
Sbjct: 366 IERLIRMKL 374


>gi|193067315|ref|ZP_03048283.1| cold-shock DEAD box protein A [Escherichia coli E110019]
 gi|192959272|gb|EDV89707.1| cold-shock DEAD box protein A [Escherichia coli E110019]
          Length = 629

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 68  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 362 RTMKLTIPEVELPNAEL 378


>gi|300929852|ref|ZP_07145298.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 187-1]
 gi|300462214|gb|EFK25707.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 187-1]
          Length = 646

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 25  FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 85  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 379 RTMKLTIPEVELPNAEL 395


>gi|183984161|ref|YP_001852452.1| cold-shock DEAD-box protein, DeaD [Mycobacterium marinum M]
 gi|183177487|gb|ACC42597.1| cold-shock DEAD-Box protein, DeaD [Mycobacterium marinum M]
          Length = 571

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 146/365 (40%), Positives = 222/365 (60%), Gaps = 11/365 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL + P V+ A+ D GY  PT IQ  TIP ++   DV G+AQTGTGKTA+F +P+L+ 
Sbjct: 15  FADLQIHPSVMRAIADVGYESPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSK 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++      +    L+L PTRELA QVA+ F +YG + + L V  + GG  +  Q   L R
Sbjct: 75  IDTTSTATQ---ALVLAPTRELALQVAEAFSRYGAHLSRLNVLPVYGGSSYAIQLAGLRR 131

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  R  L ++ ++ LV+DEAD ML MGF   ++ I S  P  +Q  
Sbjct: 132 GAQVVVGTPGRVIDHLERRTLDLSRVDYLVLDEADEMLTMGFAEDVERILSETPEYKQVA 191

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K++  +L +P  ++    ++TAE I   ++       +K   L ++L+ 
Sbjct: 192 LFSATMPPAIRKITTRYLHDPLEVKSEAKTATAENISQRYIQVAG--PRKMDALTRVLEV 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  I+F   K+    +   L  +GFS  AI+G+I Q  R + ++  ++G I ++VA
Sbjct: 250 E-PFEAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQGQRERTITALRDGGIDILVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  + +H   + 
Sbjct: 309 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALLFVSPRE-RH---LL 364

Query: 362 KLIEK 366
           KLIEK
Sbjct: 365 KLIEK 369


>gi|225868917|ref|YP_002744865.1| DEAD box helicase family protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702193|emb|CAW99913.1| DEAD box helicase family protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 538

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 147/371 (39%), Positives = 227/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTAFNLSEDIQSAVVTAGFEKASPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               K R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  N---KIRTADNTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGR+LD   R  L ++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHVVVGTPGRLLDLIKRKALRLDHVETLILDEADEMLNMGFLEDIEAIISRVPDHRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ ++V     T   ++  +V    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPAPIKEIGVKFMKDPEHVQVKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   + ++V
Sbjct: 236 VQQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLTMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 EHLTKKRMKPL 365


>gi|90416956|ref|ZP_01224885.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2207]
 gi|90331303|gb|EAS46547.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2207]
          Length = 584

 Score =  279 bits (713), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 151/373 (40%), Positives = 232/373 (62%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L   ++  +  AG+   TPIQ  ++P  L+ HD+ G AQTGTGKTA+F++ +++ 
Sbjct: 58  FHDFDLPLPLLRGIQTAGFQYCTPIQGASLPHTLRGHDMVGKAQTGTGKTAAFLVSIISD 117

Query: 63  LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L K        +   R LIL PTRELA Q+ ++ E+  ++ +L V  L+GG+ +  Q  K
Sbjct: 118 LLKHPVEDERYIGEARALILAPTRELAVQIGEDAEQLVQHTDLKVHTLVGGMDYAKQLHK 177

Query: 119 LERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           ++R   D+L+ TPGR+LD  +   + ++ +E+LVIDEADRMLDMGFIP ++ +    P  
Sbjct: 178 IKRAHCDILVGTPGRLLDFASNKDVHLDQVEVLVIDEADRMLDMGFIPQVRRLVRATPPK 237

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT TD++ ++SE +   P ++E+       +T+E     T A  ++K ALL
Sbjct: 238 EDRQTLLFSATFTDDVMRLSEQWTDKPVKLEMEPERVATDTVEQKIFITTA--NEKFALL 295

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q +L+S D +K+ ++F N++     L   L+KQGF V  I G++ Q  RMK L  FK G 
Sbjct: 296 QNILKSDD-VKSVMVFANRRDICRTLFERLKKQGFKVGLIAGDVPQARRMKTLEGFKSGA 354

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +++MVA+D+A RG+ +  V HV NF +P   E+Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 355 LKVMVATDVAGRGIHVNGVSHVINFTLPEEPEDYVHRIGRTGRAGETGISISFACEDDAF 414

Query: 356 HIDAIEKLIEKKV 368
            ++ IEKL++ K+
Sbjct: 415 LLEPIEKLLDMKL 427


>gi|24375521|ref|NP_719564.1| ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1]
 gi|24350394|gb|AAN57008.1|AE015835_4 ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1]
          Length = 623

 Score =  279 bits (713), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 146/367 (39%), Positives = 225/367 (61%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ A+ + GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L  
Sbjct: 8   FRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +         P+ L+L PTRELA QVA+ F  Y K   N  V  + GG   + Q   L+R
Sbjct: 68  VTSQTT----PQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L +  ++ LV+DEAD ML MGFI  I+ I    P  RQ  
Sbjct: 124 GPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPPQRQLA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +++++V+   L+N   I +    +T ++IE  FV   +Q++K  AL++ +L+ 
Sbjct: 184 LFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQV-SQHNKLEALVR-VLEV 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++T +  IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++A
Sbjct: 242 ENT-EGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +GHV N+D+P   E Y+HRIGRTGRAGR G A   V   +++ +  IE
Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360

Query: 362 KLIEKKV 368
           +    ++
Sbjct: 361 RATNSRI 367


>gi|224538852|ref|ZP_03679391.1| hypothetical protein BACCELL_03748 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519527|gb|EEF88632.1| hypothetical protein BACCELL_03748 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 478

 Score =  279 bits (713), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 152/393 (38%), Positives = 229/393 (58%), Gaps = 12/393 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  + +S  V  A+L+  Y  PT IQ + IP  L   D+ G+AQTGTGKTA+F +P++
Sbjct: 2   MTFKQMNISEPVCRALLEKNYSTPTLIQEQAIPEALTGRDLLGLAQTGTGKTAAFAIPII 61

Query: 61  TIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L      + +   R  R LIL PTRELA Q+ ++   Y +   L   ++ GG+  ++Q
Sbjct: 62  EQLLADPISQQKGAPRKIRALILTPTRELAIQIDESLADYTRYTTLRHTVIFGGVKQKSQ 121

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G D+L  TPGR+LD  ++G + ++++   V+DEADRMLDMGFI  ++ +   +P
Sbjct: 122 TDELRAGTDILTATPGRLLDLMSQGFIRLDHVRHFVLDEADRMLDMGFIHDVKRLLPKLP 181

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +QTL FSATM D + +++++ L+NP R+EV   SS  E I         +  +K  LL
Sbjct: 182 PKKQTLFFSATMPDSIDRLAKSLLRNPARVEVTPASSVVEIISQSVY--RVEKPQKKELL 239

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            QLL   +     ++F   K    N+   L ++G +  +IHG+  Q SR + LSNFKEG 
Sbjct: 240 AQLLLG-EAGHQVLVFSRTKHGADNIARYLSRRGITCESIHGDKSQNSRQRALSNFKEGR 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +++A+D+AARG+DI  +  V N+D+P+  E Y+HRIGRTGRAG  G+A    + E++ 
Sbjct: 299 SNVIIATDIAARGIDIKGLDLVLNYDLPDVPETYVHRIGRTGRAGCEGRAIAFCSGEEVP 358

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
            +  IEKL   K++    DL    PPLE+   A
Sbjct: 359 MLREIEKLTGIKLEQRKHDL----PPLEETKTA 387


>gi|23501930|ref|NP_698057.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
 gi|23347874|gb|AAN29972.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis
           1330]
          Length = 535

 Score =  279 bits (713), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 155/386 (40%), Positives = 230/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMCDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I    V       +K  LL  +L 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 326

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 327 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470


>gi|18310378|ref|NP_562312.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens str. 13]
 gi|110801126|ref|YP_696091.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens ATCC
           13124]
 gi|110803627|ref|YP_698708.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens SM101]
 gi|18145058|dbj|BAB81102.1| ATP-dependent RNA helicase [Clostridium perfringens str. 13]
 gi|110675773|gb|ABG84760.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens ATCC 13124]
 gi|110684128|gb|ABG87498.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens SM101]
          Length = 528

 Score =  279 bits (713), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 153/411 (37%), Positives = 243/411 (59%), Gaps = 17/411 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ A+ D G+ +P+ IQ ++IP+ L+ HD+ G AQTGTGKTA+F   ++  
Sbjct: 6   FDDLGLKESLLKAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGCAIINN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +    + + P+ LIL PTRELA QV +   + GK+  L+V  + GG P + Q + L+ G
Sbjct: 66  ADFS-GKKKSPKALILAPTRELAIQVNEELVRLGKHEKLSVLPIYGGQPIDRQIRALKNG 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+LD   R  L +N+I  LV+DEAD ML+MGFI  ++ I   +   RQTLL
Sbjct: 125 VDIVVGTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDRQTLL 184

Query: 183 FSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           FSATM  +++K++ N++ ++ K I +   S T   IE  +  +    ++   C +L    
Sbjct: 185 FSATMPPQIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRDRFETLCRVL---- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     IIFC  KK V  +   ++ +G+ V  +HG++ Q  R++ L  FKEG++  +
Sbjct: 241 -DFDEPNAAIIFCKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEGSLDFL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV N+D+P   E+Y+HRIGRTGRA R G A++LV  ++   +  
Sbjct: 300 VATDVAARGIDVESVTHVINYDLPQDNESYVHRIGRTGRANREGVAYSLVTPKEYMMLKQ 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN--NPIPQKSTGFDR 408
           I+K  + K+      +    P +++I   +HN+   N  + I + S  F +
Sbjct: 360 IQKHTKSKI------IRKAVPTVDEIFQNKHNNIINNVKSTIEEASEDFQK 404


>gi|323494679|ref|ZP_08099782.1| DNA and RNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323311112|gb|EGA64273.1| DNA and RNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 398

 Score =  278 bits (712), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 150/372 (40%), Positives = 219/372 (58%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +   +   GY KPT IQ K IP++L+  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSQPITDVISQLGYSKPTTIQQKAIPVILRGDDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G   R +  R LIL PTRELA QV    + Y KN  LT   + GG+   +Q + L
Sbjct: 61  QKLSQGETQRKKRIRALILAPTRELAVQVEQKVQDYSKNLPLTSLAMYGGVDEASQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR++D + +  +  + +E+LV+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDILVATPGRLIDMYGKRAVHFDEVEVLVLDEADRMLDMGFIEDINKILDRLPTDIQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++++++ +++  + +P  I +    ++ + IE   +       KK ALL  L+
Sbjct: 181 HLLFSATLSNKVRDLAKTAVHDPYEISIAANQASKKNIEQWLITV--DKDKKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     +IF   K     L   LEK+G    A H    Q  R ++L++FK G I+ M
Sbjct: 239 NEND-WDQALIFIETKHGAAKLASQLEKRGIIAEAFHSGRSQAVRSQLLADFKAGKIKYM 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ + ARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 IATGVGARGIDIEGLSRVINYDLPFPADEYVHRIGRTGRADASGEAISFVSKDNFKNLCM 357

Query: 360 IEK----LIEKK 367
           IE     LIE++
Sbjct: 358 IESRLGHLIERR 369


>gi|219870715|ref|YP_002475090.1| cold-shock DEAD box protein A-like protein [Haemophilus parasuis
           SH0165]
 gi|219690919|gb|ACL32142.1| cold-shock DEAD box protein A-like protein [Haemophilus parasuis
           SH0165]
          Length = 603

 Score =  278 bits (712), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 230/370 (62%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   ++ +V + G+V P+PIQ   IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 6   LTFADLGLPQSILNSVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             ++  +   R P+ L++ PTRELA QVAD  E++ KN   +    + GG  ++ Q + L
Sbjct: 66  AQIDPEQ---RHPQMLVMAPTRELAIQVADACEQFSKNMKGIRTVTIYGGQRYDIQIRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA V++ TPGRILDH  RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 KNGAQVVVGTPGRILDHIRRGTLDLSMLKAIVLDEADEMLRMGFIEDVETVMAELPEDHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+++P+ +++     +A  I   +      + K  ALL+ L 
Sbjct: 183 TALFSATMPEPIRRITKRFMKDPQEVKIQATQRSAPDIAQSYWLVNG-FRKNDALLRFL- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++    E+ G+   A++G++ Q++R + L   K G + ++
Sbjct: 241 -EVEEFDAAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQAREQALEKLKSGRLDVI 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 300 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLKN 359

Query: 360 IEKLIEKKVD 369
           IE LI+K +D
Sbjct: 360 IEHLIKKPID 369


>gi|114153757|sp|Q9LYJ9|RH46_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 46
 gi|332004672|gb|AED92055.1| DEAD-box ATP-dependent RNA helicase 46 [Arabidopsis thaliana]
          Length = 645

 Score =  278 bits (712), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 147/372 (39%), Positives = 226/372 (60%), Gaps = 14/372 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   GL  +++  V  AG+  P+PIQ ++ P+ +Q  D+  IA+TG+GKT  +++P  
Sbjct: 161 MSFEATGLPNELLREVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGF 220

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L++     RM P  L+L PTRELA Q+     K+GK+  ++ A L GG P   Q K++
Sbjct: 221 MHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEI 280

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+++ TPGR+ D     ++ ++ +  LV+DEADRMLDMGF P I+ I + VP  RQ
Sbjct: 281 ERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQ 340

Query: 180 TLLFSATMTDELQKVSENFLQNPKRI------EVNTPSSTAETIEHCFVATYAQYSKKCA 233
           TL+++AT   E++K++ + L NP ++      E+    S  +TIE   +A   ++S+   
Sbjct: 341 TLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIE--VLAPMEKHSR--- 395

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L+Q+L+SQ+     IIFC+ K+    L  +L +  F   AIHG+  Q  R  +L+ F+ 
Sbjct: 396 -LEQILRSQEPGSKIIIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRS 453

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+D+AARGLD+ D+  V N+D PN  E+Y+HRIGRTGRAG  G A+T    +D
Sbjct: 454 GRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQD 513

Query: 354 IKHIDAIEKLIE 365
            KH   + K++E
Sbjct: 514 AKHASDLIKILE 525


>gi|218706784|ref|YP_002414303.1| ATP-dependent RNA helicase DeaD [Escherichia coli UMN026]
 gi|218433881|emb|CAR14798.1| ATP-dependent RNA helicase [Escherichia coli UMN026]
 gi|284923186|emb|CBG36280.1| ATP-dependent RNA helicase (DEAD-box protein) [Escherichia coli
           042]
          Length = 655

 Score =  278 bits (712), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 30  FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 90  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 147 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 207 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 265 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 324 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 383

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 384 RTMKLTIPEVELPNAEL 400


>gi|110807031|ref|YP_690551.1| ATP-dependent RNA helicase DeaD [Shigella flexneri 5 str. 8401]
 gi|157154820|ref|YP_001464636.1| ATP-dependent RNA helicase DeaD [Escherichia coli E24377A]
 gi|157162647|ref|YP_001459965.1| ATP-dependent RNA helicase DeaD [Escherichia coli HS]
 gi|187731310|ref|YP_001881921.1| ATP-dependent RNA helicase DeaD [Shigella boydii CDC 3083-94]
 gi|188491860|ref|ZP_02999130.1| cold-shock DEAD box protein A [Escherichia coli 53638]
 gi|237706085|ref|ZP_04536566.1| cold-shock DEAD-box protein A [Escherichia sp. 3_2_53FAA]
 gi|254038328|ref|ZP_04872386.1| cold-shock DEAD-box protein A [Escherichia sp. 1_1_43]
 gi|293412537|ref|ZP_06655260.1| conserved hypothetical protein [Escherichia coli B354]
 gi|331643862|ref|ZP_08344993.1| cold-shock DEAD-box protein A [Escherichia coli H736]
 gi|331648963|ref|ZP_08350051.1| cold-shock DEAD-box protein A [Escherichia coli M605]
 gi|331674700|ref|ZP_08375459.1| cold-shock DEAD-box protein A [Escherichia coli TA280]
 gi|332280007|ref|ZP_08392420.1| cold-shock DEAD-box protein A [Shigella sp. D9]
 gi|26110171|gb|AAN82357.1|AE016767_117 Cold-shock DEAD-box protein A [Escherichia coli CFT073]
 gi|110616579|gb|ABF05246.1| inducible ATP-independent RNA helicase [Shigella flexneri 5 str.
           8401]
 gi|157068327|gb|ABV07582.1| cold-shock DEAD box protein A [Escherichia coli HS]
 gi|157076850|gb|ABV16558.1| cold-shock DEAD box protein A [Escherichia coli E24377A]
 gi|187428302|gb|ACD07576.1| cold-shock DEAD box protein A [Shigella boydii CDC 3083-94]
 gi|188487059|gb|EDU62162.1| cold-shock DEAD box protein A [Escherichia coli 53638]
 gi|226839952|gb|EEH71973.1| cold-shock DEAD-box protein A [Escherichia sp. 1_1_43]
 gi|226899125|gb|EEH85384.1| cold-shock DEAD-box protein A [Escherichia sp. 3_2_53FAA]
 gi|281602546|gb|ADA75530.1| Cold-shock DEAD-box protein A [Shigella flexneri 2002017]
 gi|291469308|gb|EFF11799.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294492243|gb|ADE90999.1| cold-shock DEAD box protein A [Escherichia coli IHE3034]
 gi|331037333|gb|EGI09557.1| cold-shock DEAD-box protein A [Escherichia coli H736]
 gi|331042710|gb|EGI14852.1| cold-shock DEAD-box protein A [Escherichia coli M605]
 gi|331068139|gb|EGI39535.1| cold-shock DEAD-box protein A [Escherichia coli TA280]
 gi|332102359|gb|EGJ05705.1| cold-shock DEAD-box protein A [Shigella sp. D9]
          Length = 651

 Score =  278 bits (712), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 30  FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 90  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 147 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 207 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 265 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 324 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 383

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 384 RTMKLTIPEVELPNAEL 400


>gi|91074155|gb|ABE09036.1| Cold-shock DEAD-box protein A [Escherichia coli UTI89]
          Length = 651

 Score =  278 bits (712), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 30  FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 90  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 147 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 207 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 265 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 324 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 383

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 384 RTMKLTIPEVELPNAEL 400


>gi|84778881|dbj|BAE73658.1| inducible ATP-independent RNA helicase [Sodalis glossinidius str.
           'morsitans']
          Length = 627

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 149/381 (39%), Positives = 232/381 (60%), Gaps = 14/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ   IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 13  FADLGLKAPILNALTDLGYEKPSPIQSACIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHN 72

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +   +  +  P+ L+L PTRELA QV +   +F K+ K  N  V  L GG  ++ Q + L
Sbjct: 73  I---KPELAAPQVLVLAPTRELAVQVGEACADFAKHMKGVN--VVALYGGQRYDVQLRAL 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + VP   Q
Sbjct: 128 RQGPQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENILAQVPAEHQ 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+  P+ + + +  +T   I   +     Q  +K   L + L
Sbjct: 188 TALFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTV--QGMRKNEALVRFL 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +++D     IIF   K   + +  +LE  G++  A++G+++Q  R + L   K+G + ++
Sbjct: 246 EAED-FDAAIIFVRTKNATLEVAEALELSGYNSAALNGDMNQALREQTLDRLKDGRLDIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKH 356
           +A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++
Sbjct: 305 IATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 364

Query: 357 IDAIEKLIEKKVDWLNGDLSS 377
           I+ I KL   +VD    ++ S
Sbjct: 365 IERIMKLTIPEVDLPTAEVLS 385


>gi|75287517|sp|Q5VQL1|RH14_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 14
 gi|55296348|dbj|BAD68264.1| putative p68 RNA helicase [Oryza sativa Japonica Group]
 gi|222617825|gb|EEE53957.1| hypothetical protein OsJ_00557 [Oryza sativa Japonica Group]
 gi|240065031|gb|ACS44654.1| ATP-dependent RNA helicase DB10 [Oryza sativa Japonica Group]
 gi|240065056|gb|ACS44655.1| ATP-dependent RNA helicase DB10 [Oryza sativa Indica Group]
          Length = 708

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 222/369 (60%), Gaps = 8/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G  P+++  V  AG+  PTPIQ ++ P+ L+  D+  +A+TG+GKT  +++P  
Sbjct: 180 MTFQSTGFPPEILREVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGF 239

Query: 61  TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L++ +   R  P  L+L PTRELA Q+ D  +K+G++  ++   L GG P   Q + L
Sbjct: 240 ILLKRLQHNSRDGPTVLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDL 299

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGAD+++ TPGR+ D     ++ ++ +  LV+DEADRMLDMGF P I+ I   V   RQ
Sbjct: 300 ERGADIVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQ 359

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY---SKKCALLQ 236
           TL+F+AT   E++K++ + L NP ++ +    +T + + +  +  Y       +K   L 
Sbjct: 360 TLMFTATWPKEVRKIASDLLSNPVQVNIG---NTDQLVANKSITQYVDVITPPEKSRRLD 416

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q+L+SQ+     IIFC+ K+    L  +L +Q +   AIHG+  Q  R  +LS F+ G  
Sbjct: 417 QILRSQEPGSKIIIFCSTKRMCDQLARNLARQ-YGASAIHGDKSQAERDSVLSEFRSGRC 475

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G A+T    +D K+
Sbjct: 476 PILVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKY 535

Query: 357 IDAIEKLIE 365
              + K++E
Sbjct: 536 ASDLVKILE 544


>gi|332532553|ref|ZP_08408430.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037974|gb|EGI74422.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 434

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 159/426 (37%), Positives = 248/426 (58%), Gaps = 11/426 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F     +P+++ A+ +  Y   TPIQ   IP V +  DV   AQTGTGKTA+F LP++
Sbjct: 1   MNFKSFSFAPEIIQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPII 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++E   +    P  L+L PTRELA Q+A+NF  + K+ +L V  L GG+    Q   L
Sbjct: 61  QKLVESELSTTNAPHALVLAPTRELAEQIANNFRDFAKHTSLKVVSLFGGVSTAGQANAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D+++ TPGR+ DH   G L + +++ LV+DEADRMLDMGFI  +QN+       RQ
Sbjct: 121 KEGVDIVVATPGRLFDHIRLGNLSLASVKHLVLDEADRMLDMGFIEDMQNVIKSCAEERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT    +++ +   L+  + + V+  +STA T+EH  V    +  +K  LL +L+
Sbjct: 181 ILLFSATFPAAIKQFASKVLKQAEIVRVDQTNSTASTVEH--VVYPVEERRKQELLSELI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  +  ++F N K+    L   L   G      HG+  Q +R + L  FKEG ++++
Sbjct: 239 GKKN-WQQVLVFVNMKETADELVKELNLDGIPAGVCHGDKSQGNRRRALREFKEGKVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+++AARG+DI  +  V N D+P  AE+Y+HRIGRTGRAGR G+A + V++E+   +  
Sbjct: 298 VATEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGRQGQAISFVSREEENTLFE 357

Query: 360 IEKLIEKKVD--WLNG-DLSSLNPPLEKIDIA-QHNHARKNNPIPQKSTGFDR---RKKN 412
           IE LI +K+   +L G ++S+    ++KI     H    ++N +  ++TG  R   R + 
Sbjct: 358 IETLIGQKIKRVYLEGYEVSNREVLIDKIGKKPAHLRRTRSNKLSGQATGEARAVNRSRI 417

Query: 413 YSSQKS 418
            S +KS
Sbjct: 418 SSVRKS 423


>gi|162382798|ref|YP_454063.2| ATP-dependent RNA helicase DeaD [Sodalis glossinidius str.
           'morsitans']
          Length = 622

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 149/381 (39%), Positives = 232/381 (60%), Gaps = 14/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ   IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FADLGLKAPILNALTDLGYEKPSPIQSACIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +   +  +  P+ L+L PTRELA QV +   +F K+ K  N  V  L GG  ++ Q + L
Sbjct: 68  I---KPELAAPQVLVLAPTRELAVQVGEACADFAKHMKGVN--VVALYGGQRYDVQLRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + VP   Q
Sbjct: 123 RQGPQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENILAQVPAEHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+  P+ + + +  +T   I   +     Q  +K   L + L
Sbjct: 183 TALFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTV--QGMRKNEALVRFL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +++D     IIF   K   + +  +LE  G++  A++G+++Q  R + L   K+G + ++
Sbjct: 241 EAED-FDAAIIFVRTKNATLEVAEALELSGYNSAALNGDMNQALREQTLDRLKDGRLDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKH 356
           +A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++
Sbjct: 300 IATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 357 IDAIEKLIEKKVDWLNGDLSS 377
           I+ I KL   +VD    ++ S
Sbjct: 360 IERIMKLTIPEVDLPTAEVLS 380


>gi|326561884|gb|EGE12219.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 7169]
 gi|326563318|gb|EGE13585.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 46P47B1]
 gi|326565972|gb|EGE16133.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 103P14B1]
 gi|326568894|gb|EGE18963.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis BC1]
 gi|326571867|gb|EGE21872.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis BC8]
 gi|326575379|gb|EGE25304.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 101P30B1]
 gi|326576534|gb|EGE26442.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis CO72]
          Length = 581

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 229/368 (62%), Gaps = 8/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGL+  ++ A+  +GY  PTPIQ K IP  L   D+   AQTG+GKTA+FVLP+L  
Sbjct: 20  FSDLGLNKPILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDK 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           + +     +  + LIL PTRELA QV D+  +YG    N+    L+GG P+  Q + L++
Sbjct: 80  MSRKPTIEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKK 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+I TPGR++DH   G++ ++ +++L++DEADRMLDMGF   I+ I    P TRQT+
Sbjct: 140 GVQVIIATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQTV 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + SAT    + K++E+F  NP+++ +   S+   E++ +C       ++ K  +L Q+L 
Sbjct: 200 MSSATWDGAVGKIAESFTVNPEKVSIKVESAHIDESVYYC-----DDFNHKNNILLQVLN 254

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   +K  +IF   K +   L   L + GF    +HG++ Q  R +I+S+ K G   ++V
Sbjct: 255 NP-KIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLV 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + HV N+D+P + E+Y+HRIGR GRAGR G A  L + +D + ++ I
Sbjct: 314 ATDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQLEHI 373

Query: 361 EKLIEKKV 368
            + +++++
Sbjct: 374 NRYLKRQM 381


>gi|300823875|ref|ZP_07103999.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 119-7]
 gi|309793740|ref|ZP_07688166.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 145-7]
 gi|300523643|gb|EFK44712.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 119-7]
 gi|308122697|gb|EFO59959.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 145-7]
          Length = 646

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 25  FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 85  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 379 RTMKLTIPEVELPNAEL 395


>gi|114564866|ref|YP_752380.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114336159|gb|ABI73541.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 634

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 142/367 (38%), Positives = 229/367 (62%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ ++ + GY  PTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L  
Sbjct: 7   FRELGLSESLLRSLDELGYENPTPIQAASIDPLMAGKDIIGQAQTGTGKTGAFALPLLNK 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++    ++  P+ L+L PTRELA QVA+ F  Y K      V  + GG   + Q   L+R
Sbjct: 67  ID---MKINAPQILVLAPTRELAVQVAEAFGSYAKFMKGFHVLPIYGGQSMQQQLNALKR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L ++N++ LV+DEAD ML MGFI  I+ +    P   Q  
Sbjct: 124 GPQVIVGTPGRVMDHMRRGTLKLDNLKALVLDEADEMLKMGFIDDIEWVLEHKPADSQLA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +++++V+   L NP  I + +  +T E+I+  +V   +Q++K  AL++ +L+ 
Sbjct: 184 LFSATMPEQIKRVAAKHLSNPVNISIASSQTTVESIDQRYVQV-SQHNKLEALVR-VLEV 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++T +  IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++A
Sbjct: 242 ENT-EGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGKLDILIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +GHV N+D+P  +E Y+HRIGRTGRAGR G A   V   +++ +  IE
Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDSEAYVHRIGRTGRAGRTGMAILFVTNREMRMLRTIE 360

Query: 362 KLIEKKV 368
           +    ++
Sbjct: 361 RATNSRI 367


>gi|311030272|ref|ZP_07708362.1| putative ATP-dependent RNA helicase [Bacillus sp. m3-13]
          Length = 510

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 156/371 (42%), Positives = 222/371 (59%), Gaps = 7/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LG+   V  ++   G   PTPIQ +TIP VL+ HDV   AQTGTGKT +FVLP   
Sbjct: 3   DFLKLGIRKGVNHSLKSMGINAPTPIQERTIPAVLEGHDVIAQAQTGTGKTLAFVLP--- 59

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
           ILEK        + LIL PTRELA Q+    +   +N + L V  + GG    +Q KKL+
Sbjct: 60  ILEKVDVNNPETQALILTPTRELAHQITKEIKNLKENIDDLQVLAVYGGQDVNSQLKKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V++ TPGR+LDH  RG + ++ I +LVIDEAD+ML MGF+P I  IT+ +  +RQT
Sbjct: 120 GAQHVIVATPGRLLDHVRRGTIDLSTISMLVIDEADQMLLMGFLPDIDTITAEIFASRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ +E+  +++ +++ PK I++     T  +I H  V T  +  +K   +  L++
Sbjct: 180 MLFSATIPNEIHALAKKYMKQPKHIQIAEKQVTVASINHYAVETTDR--RKEGTMLHLIK 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIFC  K  V  L   L+ +G    A+HG+I Q  R + +  F+E  +Q +V
Sbjct: 238 EHNPYL-AIIFCRTKARVQKLTEVLKHEGVECEALHGDIPQSKRNRAMKWFREAKLQYLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV+N+D+P   E YIHR GRTGRA   G+A+TL A  D+  +  I
Sbjct: 297 ATDVAARGLDVEGVTHVYNYDIPQDLETYIHRTGRTGRASGSGEAYTLFAPRDVDFLQMI 356

Query: 361 EKLIEKKVDWL 371
           EK IE  ++ L
Sbjct: 357 EKGIEMPLEKL 367


>gi|261758239|ref|ZP_06001948.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|261738223|gb|EEY26219.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
          Length = 462

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 153/386 (39%), Positives = 228/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 16  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 76  IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 135

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 136 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 195

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I         +  ++  LL  +L 
Sbjct: 196 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRR--LLSAMLT 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 254 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 312

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P   HV N+D P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 313 ATDIAARGIDVPGSSHVVNYDPPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 371

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 372 AVERVTRSKLSIKDAPVKLAPAPVAK 397


>gi|189347343|ref|YP_001943872.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245]
 gi|189341490|gb|ACD90893.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245]
          Length = 610

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 144/375 (38%), Positives = 235/375 (62%), Gaps = 11/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F++L L+  ++ A+ + GY KPTPIQ +TIPL+L+  DV G AQTGTGKTA+F LP+L
Sbjct: 24  LNFSNLELAEPLLRALEEVGYEKPTPIQAQTIPLLLEGRDVLGQAQTGTGKTAAFALPVL 83

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNK 117
           +  +L K       P+ L+L PTRELA QVA+ F +Y +      V  + GG  +  Q +
Sbjct: 84  SNIVLSKTE-----PQALVLTPTRELAIQVAEAFHRYAEYLKGFHVVPIYGGQDYGTQLR 138

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+RG  V++ TPGR++DH  RG L +++++ LV+DEAD ML MGFI  ++ I    P +
Sbjct: 139 MLKRGVHVVVGTPGRVMDHMRRGSLSLSSLQCLVLDEADEMLRMGFIDDVEWILDQTPES 198

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ  LFSATM   ++++++  L++P  + +   ++T ETI   +       S K  +L +
Sbjct: 199 RQVALFSATMPAPIRRIAQKHLKSPAEVIIQNKTTTVETIRQRYWIVGG--SHKLDVLTR 256

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+ +      +IF   K   + L   L+ +G++  A++G++ Q  R + +   K+G++ 
Sbjct: 257 ILEFE-PFDGILIFVRTKTMTLELAEKLQARGYAASALNGDMAQNQRERTVDQLKDGSLS 315

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G+A   V+  +   +
Sbjct: 316 IVIATDVAARGLDVDRISHVINYDIPSDTESYVHRIGRTGRAGRSGEAILFVSPREKNML 375

Query: 358 DAIEKLIEKKVDWLN 372
            AIEK   K+++ + 
Sbjct: 376 YAIEKATRKRIELME 390


>gi|87125801|ref|ZP_01081644.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9917]
 gi|86166610|gb|EAQ67874.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9917]
          Length = 396

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 147/325 (45%), Positives = 206/325 (63%), Gaps = 4/325 (1%)

Query: 40  DVCGIAQTGTGKTASFVLPMLTILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
           DV   AQTGTGKTA F LPML  L  G RA  R  R L+L PTRELAAQV DN  +Y  +
Sbjct: 6   DVMAAAQTGTGKTAGFTLPMLERLCHGARAGRRQIRALVLTPTRELAAQVLDNVRQYSCH 65

Query: 99  YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L   ++ GG+    Q ++L +G DVL+ TPGR+LD   +G +    +E LV+DEADRM
Sbjct: 66  LPLRSEVVFGGVKINPQIQRLAQGVDVLVATPGRLLDLHQQGAVRFEAVECLVLDEADRM 125

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
           LDMGFI  I+ + S +P  RQTLLFSAT +  ++K+++  L +P +I+V   + TA ++E
Sbjct: 126 LDMGFIHDIRRLLSRLPERRQTLLFSATFSAPIRKLAQGMLHHPLQIQVAPANQTARSVE 185

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
                      +K ALL  L++S+D  +  ++F   K     +   L ++G    AIHGN
Sbjct: 186 QTV--HPCDMGRKAALLTHLIRSED-WQQVLVFSRTKHGANKVADQLNQEGLVAAAIHGN 242

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
             Q +R + L  FK+G+++++VA+D+AARG+DI  + HV N D+PN AE+Y+HRIGRTGR
Sbjct: 243 KSQGARTRALQGFKDGSVRVLVATDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRTGR 302

Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKL 363
           AG  G A +LVA E+   + AIE+L
Sbjct: 303 AGESGHAISLVAAEEALLLKAIERL 327


>gi|326569194|gb|EGE19255.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis BC7]
          Length = 581

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 229/368 (62%), Gaps = 8/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGL+  ++ A+  +GY  PTPIQ K IP  L   D+   AQTG+GKTA+FVLP+L  
Sbjct: 20  FSDLGLNKPILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDK 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           + +     +  + LIL PTRELA QV D+  +YG    N+    L+GG P+  Q + L++
Sbjct: 80  MSRKPTIEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKK 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+I TPGR++DH   G++ ++ +++L++DEADRMLDMGF   I+ I    P TRQT+
Sbjct: 140 GVQVIIATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQTV 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + SAT    + K++E+F  NP+++ +   S+   E++ +C       ++ K  +L Q+L 
Sbjct: 200 MSSATWDGAVGKIAESFTVNPEKVSIKVESAHIDESVYYC-----DDFNHKNNILLQVLN 254

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   +K  +IF   K +   L   L + GF    +HG++ Q  R +I+S+ K G   ++V
Sbjct: 255 NP-KIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLV 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + HV N+D+P + E+Y+HRIGR GRAGR G A  L + +D + ++ I
Sbjct: 314 ATDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQLEHI 373

Query: 361 EKLIEKKV 368
            + +++++
Sbjct: 374 NRYLKRQM 381


>gi|330468685|ref|YP_004406428.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
 gi|328811656|gb|AEB45828.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
          Length = 566

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 146/367 (39%), Positives = 214/367 (58%), Gaps = 3/367 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL  +++ A+   GY +PTPIQ + I  +L   D+ G A TGTGKTA+F LP+L  
Sbjct: 17  FADLGLRSELLAALSALGYEEPTPIQREAIGPLLAGRDLLGQAATGTGKTAAFALPLLQR 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +   R     P  L+L PTRELA QV++ F +YGK+    V  + GG P   Q + L+ G
Sbjct: 77  MPDERP-TGDPVALVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALDNG 135

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR LDH  RG L + N+  +V+DEAD MLDMGF   I+ I    P  RQT+L
Sbjct: 136 VDVVVATPGRALDHIARGTLRLGNLATVVLDEADEMLDMGFAEDIEAILEHTPEQRQTVL 195

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQS 241
           FSATM   +  ++   L +P RI +      A        + Y    + K A L ++L  
Sbjct: 196 FSATMPSRIDGMARAHLTDPVRILIAREQPVAGEAPRVRQSAYLVARAHKPAALGRVLDV 255

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + +    I+FC  ++ V  L  ++  +G+   A+HG + Q  R +++   + GT  L+VA
Sbjct: 256 E-SPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRGGTADLLVA 314

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+DVP+  E+Y+HRIGR GRAGR G A TL    + + +  IE
Sbjct: 315 TDVAARGLDVEQLSHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIE 374

Query: 362 KLIEKKV 368
           ++  +++
Sbjct: 375 RVTGQRI 381


>gi|319407442|emb|CBI81093.1| ATP-dependent RNA helicase [Bartonella sp. 1-1C]
          Length = 415

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 154/370 (41%), Positives = 226/370 (61%), Gaps = 8/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +LGLS  +V  +  AG  KP  IQ K IP++L+ HD+ GIAQTG+GKT +F LP+L  
Sbjct: 9   FTELGLSSILVKNLFSAGMNKPKFIQEKAIPVMLKGHDILGIAQTGSGKTLAFSLPILNR 68

Query: 62  ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL  G  R  +  R LIL PTRELA Q+ +      K  +L+  L++GG+    Q +++ 
Sbjct: 69  ILTLGDKRYPKTARALILVPTRELAIQIEEAISAIAKGTHLSTCLIVGGMSRLTQIRRMA 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+LI T GR++D      + ++     ++DEADRMLDMGFI  ++ I   +    QT
Sbjct: 129 KGVDILIATTGRLMDLIRSKYVDLSQSRFFILDEADRMLDMGFINDVRQIARFLNEKCQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ E+  +++N L+ P +IEV +  +TA  I           S+K ++L +LL 
Sbjct: 189 ALFSATMSKEVNVLADNLLRKPVKIEVVSQGTTAAEITQVLYCV--STSEKKSILSKLL- 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   + + I+F   K    ++  SL K G+SV  IHGN  Q +R   L NF+EG ++++V
Sbjct: 246 TNPALTSVIVFIRTKHGADSVARSLTKAGYSVATIHGNKSQNARQCALKNFREGLVRVLV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID-- 358
           A+D+AARG+DIP + HV N+D+P+ AE+Y+HRIGRTGR G  G A T    E I+ +   
Sbjct: 306 ATDIAARGIDIPGISHVINYDLPDNAESYVHRIGRTGRNGASGDAITFF-DEKIEQVRLC 364

Query: 359 AIEKLIEKKV 368
           AIE+LI  K+
Sbjct: 365 AIERLIRMKL 374


>gi|222034881|emb|CAP77624.1| Cold-shock DEad box protein A [Escherichia coli LF82]
          Length = 645

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 24  FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 84  LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 141 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 201 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 259 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 318 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 377

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 378 RTMKLTIPEVELPNAEL 394


>gi|152991450|ref|YP_001357172.1| DEAD-box ATP dependent DNA helicase [Nitratiruptor sp. SB155-2]
 gi|151423311|dbj|BAF70815.1| ATP-dependent RNA helicase, DEAD-box family [Nitratiruptor sp.
           SB155-2]
          Length = 471

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 151/363 (41%), Positives = 224/363 (61%), Gaps = 11/363 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+D  L P+++ A+  AG+ +P+PIQ + IP+VL   D+ G A TGTGKTA+F LP+L
Sbjct: 1   MTFSDFNLKPQIMKAIEQAGFKEPSPIQKEAIPVVLAGKDMVGQAHTGTGKTAAFALPLL 60

Query: 61  TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +LE  G         L++ PTRELA QV+D   + GK   +  A + GG  +  Q   +
Sbjct: 61  NMLELDGEVE-----ALVIVPTRELATQVSDEIFRLGKYLGIKTATVYGGSSYSRQLNHI 115

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              A V++ TPGR+LD    GK+ +N  + +V+DEAD MLDMGF+  I+ I + +P  RQ
Sbjct: 116 ANAA-VVVATPGRLLDLLKSGKIELNP-KFVVLDEADEMLDMGFLDDIKAIFNYLPTNRQ 173

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   ++++++  L +P+ I +     T   I+  F     ++ +  AL++ LL
Sbjct: 174 TLLFSATMPQAIKELAQQILHSPEFISITKKEVTNVNIKQ-FYYVVDEHERDEALIR-LL 231

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K+ IIFC  K  V  L   LE QG+S   +HG++ QR R + +  FK G I+++
Sbjct: 232 DYKNPTKS-IIFCRMKIEVDRLAQFLEAQGYSAKGLHGDMQQRQREETIKAFKRGNIEIL 290

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI DV HVFN+ +P   E+Y+HRIGRTGRAG+ G A +LV   + K +  
Sbjct: 291 IATDVAARGLDISDVSHVFNYHIPFDPESYVHRIGRTGRAGKEGIAISLVTPHEFKQLLR 350

Query: 360 IEK 362
           I+K
Sbjct: 351 IQK 353


>gi|224141279|ref|XP_002324002.1| predicted protein [Populus trichocarpa]
 gi|222867004|gb|EEF04135.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 145/367 (39%), Positives = 224/367 (61%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G   +++  VL AG+  PTPIQ ++ P+ LQ  D+  +A+TG+GKT  +++P    
Sbjct: 156 FEATGFPSEILKEVLKAGFSSPTPIQAQSWPVALQSRDIVAVAKTGSGKTLGYLIPGFIH 215

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L++ R   ++ P  L+L PTRELA Q+ D   K+GK+  ++   L GG P   Q K+L+R
Sbjct: 216 LKRCRNDPQLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKELDR 275

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GAD+++ TPGR+ D     ++ +N ++ LV+DEADRMLDMGF P I+ I   VP  RQTL
Sbjct: 276 GADIVVATPGRLNDILEMRRVSLNQVKYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTL 335

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY---SKKCALLQQL 238
           +++AT   E++K++ + L NP ++ +    +  E + +  +  + +     +K   L+Q+
Sbjct: 336 MYTATWPKEVRKIAADLLVNPVQVNIG---NIDELVANKSITQHVELLAPLEKHRRLEQI 392

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+SQ+     IIFC+ KK    L  +L +Q F   AIHG+  Q  R  +LS F+ G   +
Sbjct: 393 LRSQEPGSKIIIFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDHVLSQFRTGRSPI 451

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G A+T    +D K+  
Sbjct: 452 LVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDAKYAS 511

Query: 359 AIEKLIE 365
            + K++E
Sbjct: 512 DLIKVLE 518


>gi|262396820|ref|YP_003288673.1| cold-shock DEAD-box protein A [Vibrio sp. Ex25]
 gi|262340414|gb|ACY54208.1| cold-shock DEAD-box protein A [Vibrio sp. Ex25]
          Length = 644

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 223/370 (60%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+   G+V PTPIQ   IP +L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             ++  +   R P+ ++L PTRELA QVA   +  GKN   L V  + GG     Q + L
Sbjct: 66  NKIDLNQ---RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA V++ TPGR+ D  NR +L ++ +   V+DEAD ML+MGF+  +  I    P + Q
Sbjct: 123 KSGAQVIVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   L+K+ E FL+ P  ++V   + T + ++  F        +K   + +LL
Sbjct: 183 RVLFSATMPPMLKKIVERFLREPVMVDVAGKNHTVDKVQQQFWVVKG--VEKDEAMSRLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVD 369
           IE++ +  ++
Sbjct: 360 IERVTKSSME 369


>gi|197337466|ref|YP_002157976.1| cold-shock deAd box protein a [Vibrio fischeri MJ11]
 gi|197314718|gb|ACH64167.1| cold-shock deAd box protein a [Vibrio fischeri MJ11]
          Length = 640

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 219/369 (59%), Gaps = 7/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L L   ++ A+ D G+V PTPIQ  +IPL+L+  D  G AQTGTGKTA+F LP+L 
Sbjct: 7   EFRQLALDESILSALDDMGFVAPTPIQAASIPLLLEGRDALGKAQTGTGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
              K   +   P+ +I+ PTRELA QVA   +  G+N   L V  + GG     Q + L 
Sbjct: 67  ---KINLKQHNPQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMRALS 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +++ TPGR+ D  NR +L +  +   ++DEAD ML MGF+  +  I    P T Q 
Sbjct: 124 RGAHIIVGTPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPDTAQR 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++ + + +L++P R++V   + T + +E  F        +K   + +LL+
Sbjct: 184 ILFSATMPPMVKTIVDRYLRDPARVDVAGTNHTVDKVEQNFWVVKG--VEKDEAMSRLLE 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + N K G I ++V
Sbjct: 242 TEET-DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    ++ +  I
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQMRMLRTI 360

Query: 361 EKLIEKKVD 369
           E++ +  ++
Sbjct: 361 ERVTKSTME 369


>gi|315634792|ref|ZP_07890074.1| ATP-dependent RNA helicase DeaD [Aggregatibacter segnis ATCC 33393]
 gi|315476344|gb|EFU67094.1| ATP-dependent RNA helicase DeaD [Aggregatibacter segnis ATCC 33393]
          Length = 600

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 147/373 (39%), Positives = 232/373 (62%), Gaps = 13/373 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL   ++ AV D G+  P+PIQ   IP +L+  DV G+AQTG+GKTA+F LP+L
Sbjct: 6   MTFKDLGLPEFILNAVSDLGFETPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFSLPIL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117
             ++      + P+ L++ PTRELA QVAD    F KY K  N+    L GG  ++ Q +
Sbjct: 66  AQIDPTE---KHPQLLVMAPTRELAIQVADACEQFVKYAKGINIVT--LYGGQRYDIQLR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++GA V++ TPGRILDH  RG L +  ++ +V+DEAD ML MGFI  ++ + + +P  
Sbjct: 121 ALKQGAQVVVGTPGRILDHLRRGTLSLAELKAIVLDEADEMLRMGFIDDVETVMAELPEH 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
            QT LFSATM + ++++++ F+++P+ +++     +A  I + C+   Y    +K   L 
Sbjct: 181 HQTALFSATMPEPIRRITKRFMKDPQEVKIKATQQSAPDIAQSCW---YVHGVRKNDALL 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + L+ +D     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++
Sbjct: 238 RFLEVED-FDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSL 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + 
Sbjct: 297 DIVVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRL 356

Query: 357 IDAIEKLIEKKVD 369
           +  +E LI+K ++
Sbjct: 357 LRNVEHLIKKNIE 369


>gi|254706759|ref|ZP_05168587.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
          Length = 535

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 155/386 (40%), Positives = 229/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I    V       +K  LL  +L 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 326

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 327 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P   HV N+D+P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 386 ATDIAARGIDVPGSSHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470


>gi|257454198|ref|ZP_05619468.1| cold-shock DEAD box protein A homolog [Enhydrobacter aerosaccus
           SK60]
 gi|257448371|gb|EEV23344.1| cold-shock DEAD box protein A homolog [Enhydrobacter aerosaccus
           SK60]
          Length = 777

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 144/384 (37%), Positives = 231/384 (60%), Gaps = 22/384 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  ++ +++  GY  PTPIQ + IP  L+  D+   AQTG+GKTA+FVLP+L  
Sbjct: 71  FTALGLSGSLLKSIVATGYTTPTPIQARAIPAALEGRDLLLSAQTGSGKTAAFVLPILHQ 130

Query: 63  L----------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVAL 105
           L                ++GR + ++ + LIL PTRELA QV D+  KYG    +L    
Sbjct: 131 LSELQAKEKAAEKTASGKRGRQQPKVVQALILTPTRELANQVQDSIRKYGSAMKDLYSVP 190

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           L+GG  +  Q + L++G  +++ TPGR+LDH N  ++ ++++ +LV+DEADRMLDMGF  
Sbjct: 191 LVGGAAYSGQIRALKKGVQIIVATPGRLLDHINAQRVNLSDLTMLVLDEADRMLDMGFAD 250

Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
            I  I    P  RQT++ SAT    + K++E+F ++P+RI +     TA   E  +    
Sbjct: 251 DINAILEATPAHRQTIMSSATWDGPVGKIAESFTKDPERINIKV--ETAHIDEKVYFCD- 307

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
             +  K  LL+QL+   +  +  IIF   K++   +   L++     C +HG++ Q  R 
Sbjct: 308 -NFDHKNKLLEQLICDPERGQ-AIIFTATKRSSEEVAERLQQWDHKACYLHGDLPQSKRN 365

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           +I+S+ + G   ++VA+D+AARGLD+P++ HVFN+D+P + E+Y+HRIGR+GRAGR G A
Sbjct: 366 RIVSDLRSGKFDIVVATDVAARGLDLPNITHVFNYDLPRQVEDYVHRIGRSGRAGRTGIA 425

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVD 369
             L +++D +    I + +++ ++
Sbjct: 426 INLCSRDDRRQFGNIARYLKRDIN 449


>gi|78224228|ref|YP_385975.1| ATP-dependent RNA helicase RhlB [Geobacter metallireducens GS-15]
 gi|78195483|gb|ABB33250.1| ATP-dependent RNA helicase RhlB [Geobacter metallireducens GS-15]
          Length = 438

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 154/381 (40%), Positives = 220/381 (57%), Gaps = 9/381 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   V   + D G+   TPIQ KT+PL L   DV G AQTGTGKTA+F++ + 
Sbjct: 1   MKFTDLNLPELVQRGIADTGFTDCTPIQEKTLPLALSGKDVAGQAQTGTGKTAAFLISLF 60

Query: 61  TILEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           T L K       R PR LIL PTREL  Q+  + +  G +    +  + GG+ +  Q   
Sbjct: 61  TRLLKNPTEGETRNPRALILAPTRELVVQIEKDAQALGAHCGFVIQAIYGGVDYMKQRSA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPF- 176
           L+ GADV++ TPGR++D+  +    +  IE+LVIDEADRM DMGFI  ++ I   L PF 
Sbjct: 121 LKEGADVVVGTPGRLIDYLKQKVYSLKEIEVLVIDEADRMFDMGFIADLRFILRRLPPFD 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ L+FSAT+   + +++  F+  P+++ V     TAE +E      Y    K+   L 
Sbjct: 181 KRQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVL---YHVGRKEKFPLL 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L  +  M+  +IF N K+    L   L    F    I G+++QR RM+IL +FK G +
Sbjct: 238 LGLLRKKGMERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRMRILEDFKNGKL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +M+A+D+A+RGL I  V HV N+D+P  AE+Y+HRIGRT RAG  GKA ++  ++   H
Sbjct: 298 PIMIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISMADEDGAFH 357

Query: 357 IDAIEKLIEKK--VDWLNGDL 375
           ++AI + I+ K  V+W   DL
Sbjct: 358 LEAIHEYIKDKIPVEWAEDDL 378


>gi|325577637|ref|ZP_08147912.1| ATP-dependent RNA helicase DeaD [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160382|gb|EGC72508.1| ATP-dependent RNA helicase DeaD [Haemophilus parainfluenzae ATCC
           33392]
          Length = 612

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 147/371 (39%), Positives = 233/371 (62%), Gaps = 13/371 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV D G+  P+PIQ   IP +L+  DV G+AQTG+GKTA+F LP+L  
Sbjct: 7   FNDLGLPEFILKAVSDLGFETPSPIQQACIPALLEGRDVLGMAQTGSGKTAAFSLPLLAK 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           ++      + P+ L++ PTRELA QVAD   +F KY K  N+    L GG  ++ Q + L
Sbjct: 67  IDPA---AKHPQLLVMAPTRELAIQVADACEHFMKYAKGINIVT--LYGGQRYDIQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH +R  L ++ ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 122 KQGAQVVVGTPGRILDHIHRNTLNLSELKAIVLDEADEMLRMGFIDDVETVMAELPEEHQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQL 238
           T LFSATM + ++++++ F+ NP+ +++   +  A  IE  C+   Y Q  +K   L + 
Sbjct: 182 TALFSATMPEPIRRITKRFMNNPQEVKIKVNNDNAPDIEQNCW---YVQGFRKNEALLRF 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ ++     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ +
Sbjct: 239 LEVEE-FDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + + 
Sbjct: 298 VVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLR 357

Query: 359 AIEKLIEKKVD 369
            IE L++K ++
Sbjct: 358 NIEHLMKKPIN 368


>gi|313887901|ref|ZP_07821580.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846067|gb|EFR33449.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 544

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 144/372 (38%), Positives = 227/372 (61%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DL LS +V+ A+ D G+  P+ +Q  TIPL+L+  DV   AQTGTGKTASF +PM+
Sbjct: 1   MRFSDLNLSKEVLQAIDDMGFESPSEVQEATIPLILEGRDVLAQAQTGTGKTASFGIPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             +E     ++    L+L PTRELA QV+D  +K  K    +++  + GG     Q + L
Sbjct: 61  EGIEDKSHNLQ---GLVLVPTRELARQVSDELKKLAKYKKFISIVPIYGGADMGKQLRDL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GAD+++ TPGR++DH  R  +++++++ L +DEAD M DMGF   ++ I       RQ
Sbjct: 118 KKGADIVVGTPGRVMDHMKRKTIVLDDLKFLTLDEADEMFDMGFRDDMKTIIEKTNPDRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSAT  +++++ S  +  +P ++ +     TAE IE  ++      + K  +L +L+
Sbjct: 178 TLFFSATFDNDIKEFSRLYQVDPAKVIIEKKELTAEKIEQFYLEL--NRNMKTEILNRLI 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  IIFCN K+ V  L   + ++G+ V ++HG++ Q SR  ++  F+ GTI ++
Sbjct: 236 LIHKP-KKSIIFCNTKRMVEALELEIAQRGYKVDSLHGDMRQSSRDNVMKKFRNGTIDVL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+ D+  VFN+D+P +AE Y+HRIGRT RAG+ G +FT V   D      
Sbjct: 295 IATDVAARGLDVSDIDLVFNYDLPQQAEYYVHRIGRTARAGKKGASFTFVTSRDYPKFKE 354

Query: 360 IEKLIEKKVDWL 371
           IEK    K++ +
Sbjct: 355 IEKYANTKMEKM 366


>gi|195977782|ref|YP_002123026.1| probable ATP-dependent RNA helicase Exp9 [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974487|gb|ACG62013.1| probable ATP-dependent RNA helicase Exp9 [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 538

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 147/371 (39%), Positives = 227/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTAFNLSEDIQSAVVTAGFEKASPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               K R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  N---KIRTADNTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGR+LD   R  L ++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHVVVGTPGRLLDLIKRKALRLDHVETLILDEADEMLNMGFLEDIEAIISRVPDHRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ ++V     T   ++  +V    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPAPIKEIGVKFMKDPEHVQVKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   + ++V
Sbjct: 236 VQQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLTMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 EHLTKKRMKPL 365


>gi|293376735|ref|ZP_06622957.1| ATP-dependent RNA helicase DbpA [Turicibacter sanguinis PC909]
 gi|325845681|ref|ZP_08168964.1| ATP-dependent RNA helicase DbpA [Turicibacter sp. HGF1]
 gi|292644601|gb|EFF62689.1| ATP-dependent RNA helicase DbpA [Turicibacter sanguinis PC909]
 gi|325488282|gb|EGC90708.1| ATP-dependent RNA helicase DbpA [Turicibacter sp. HGF1]
          Length = 479

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 135/362 (37%), Positives = 225/362 (62%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  ++ ++   GY   T +Q   IP VL + D+   ++TG+GKTA+F +P+  +
Sbjct: 4   FNELQLSESILKSLTGLGYEHATEVQASVIPTVLNKQDLIVQSKTGSGKTAAFGIPICEM 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +   P+ LIL PTRELA Q+ +     G+   + V  + G  PF+ Q ++L++ 
Sbjct: 64  LDWDENK---PQALILTPTRELALQIKEEISNIGRFKRIKVTAVYGKSPFKEQARELKQK 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ DH  RG L ++ + + V+DEAD ML MGFI  ++NI +  P  RQT+L
Sbjct: 121 THIVVGTPGRVQDHLERGTLSLDKLSLFVLDEADEMLKMGFIEVVENIMNEAPRKRQTML 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D ++K+S+++L +P+ I++ +P+ T + +EH       Q  +K  LLQ LL  +
Sbjct: 181 FSATMPDRIKKLSQHYLTHPQEIKIESPTLTTDLVEHALYEVREQ--EKVKLLQDLLMVE 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  +  +IFC+ K+ V  L  +L ++G+ +  +HG +DQ+ R + + NFK G    +V++
Sbjct: 239 NP-ERCMIFCSTKEAVDALYRNLSQKGYPIERLHGGLDQKERFETMKNFKIGRFAYLVST 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+D+  V HV N+D+P   ++++HRIGR GRAG+ GKA T   + D + ++ I+ 
Sbjct: 298 DVAARGIDVSGVSHVINYDLPPEKDSFVHRIGRAGRAGQKGKAITFATRFDQRWLEEIQA 357

Query: 363 LI 364
            I
Sbjct: 358 YI 359


>gi|330829254|ref|YP_004392206.1| DEAD/DEAH box helicase domain-containing protein [Aeromonas veronii
           B565]
 gi|328804390|gb|AEB49589.1| DEAD/DEAH box helicase domain protein [Aeromonas veronii B565]
          Length = 633

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 150/393 (38%), Positives = 236/393 (60%), Gaps = 15/393 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL+  V+ A+ D GY +P+PIQ   IP ++  HD+ G AQTGTGKTA+F LP+L+ 
Sbjct: 10  FSELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTAAFALPLLSR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           LE G    R  + L+L PTRELA QVA+  ++Y  +  +  V  + GG  +E Q + L R
Sbjct: 70  LEAGN---RNTQILVLAPTRELALQVAEACQRYAHHMPDFHVLPIYGGASYETQTRALRR 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++D   R  L ++ ++ LV+DEAD ML MGFI  +  I    P TRQ  
Sbjct: 127 GAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCPSTRQVA 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +++++V++  L+ PK I++ + ++TA TI   +      +  K   + +LL+ 
Sbjct: 187 LFSATMPEQIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQVTGLH--KLDAMTRLLEV 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + + +  ++F   K     L   L  +G +  A+HG+I Q+ R + +   ++G + +++A
Sbjct: 245 E-SYEALLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   VA  + + + AIE
Sbjct: 304 TDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIE 363

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
               + ++ +        P  E  DI QH  A+
Sbjct: 364 HATRQAIEPMK------MPSTE--DINQHRLAK 388


>gi|326563433|gb|EGE13698.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 12P80B1]
          Length = 581

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 228/368 (61%), Gaps = 8/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGL+  ++ A+  +GY  PTPIQ K IP  L   D+   AQTG+GKTA+FVLP+L  
Sbjct: 20  FSDLGLNKPILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDK 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           + +     +  + LIL PTRELA QV D+  +YG    N+    L+GG P+  Q + L++
Sbjct: 80  MSRKPTIEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKK 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+I TPGR++DH   G++ ++ +++L++DEADRMLDMGF   I+ I    P TRQT+
Sbjct: 140 GVQVIIATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQTV 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + SAT    + K++E F  NP+++ +   S+   E++ +C       ++ K  +L Q+L 
Sbjct: 200 MSSATWDGAVGKIAERFTVNPEKVSIKVESAHIDESVYYC-----DDFNHKNNILLQVLN 254

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   +K  +IF   K +   L   L + GF    +HG++ Q  R +I+S+ K G   ++V
Sbjct: 255 NP-KIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLV 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + HV N+D+P + E+Y+HRIGR GRAGR G A  L + +D + ++ I
Sbjct: 314 ATDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQLEHI 373

Query: 361 EKLIEKKV 368
            + +++++
Sbjct: 374 NRYLKRQM 381


>gi|126659493|ref|ZP_01730626.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110]
 gi|126619227|gb|EAZ89963.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110]
          Length = 478

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 146/369 (39%), Positives = 225/369 (60%), Gaps = 5/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS   +  +   G+  PT IQ K IPL+L+ HDV G +QTGTGKTA++ LP+L
Sbjct: 3   ISFENLGLSEARINQLQTLGFESPTEIQEKAIPLLLEGHDVLGQSQTGTGKTAAYSLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++   + V+    LIL PTRELA QVA+  + +     L +  + GG   E Q + LE
Sbjct: 63  EQIDTRNSNVQ---ALILTPTRELAQQVAEALKDFSTERRLYILTVYGGQSIERQIRSLE 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++D   R KL+++++   V+DEAD ML MGFI  ++ I    P  R T
Sbjct: 120 RGVQIVVGTPGRVIDLLERKKLVLDSLRWAVLDEADEMLSMGFIDDVKTILRKTPDARNT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM  E++ +   FL++P  + V    +    I+         +SK+ AL Q +L+
Sbjct: 180 ACFSATMPREIRDLVNQFLKSPVTVSVERTQAAPTRIDQHLYMVPRGWSKRKAL-QPILE 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D  ++ IIF   K+   +L   L++ G SV   HGN+ Q  R +++  F++G I+L+V
Sbjct: 239 IEDP-ESAIIFVRTKQTASDLTSKLQEIGHSVDEYHGNLSQSQRERLVHRFRDGKIKLVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++ HV N+D+P+ +E YIHRIGRTGRAG+ G A +L+   D + +  I
Sbjct: 298 ATDIAARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLIEPIDRRMVRQI 357

Query: 361 EKLIEKKVD 369
           EK + +K++
Sbjct: 358 EKRLRQKLE 366


>gi|311032981|ref|ZP_07711071.1| putative ATP-dependent RNA helicase [Bacillus sp. m3-13]
          Length = 375

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 156/371 (42%), Positives = 222/371 (59%), Gaps = 7/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LG+   V  ++   G   PTPIQ +TIP VL+ HDV   AQTGTGKT +FVLP   
Sbjct: 3   DFLKLGIRKGVNHSLKSMGINAPTPIQERTIPAVLEGHDVIAQAQTGTGKTLAFVLP--- 59

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
           ILEK        + LIL PTRELA Q+    +   +N + L V  + GG    +Q KKL+
Sbjct: 60  ILEKVDVNNPETQALILTPTRELAHQITKEIKNLKENIDDLQVLAVYGGQDVNSQLKKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V++ TPGR+LDH  RG + ++ I +LVIDEAD+ML MGF+P I  IT+ +  +RQT
Sbjct: 120 GAQHVIVATPGRLLDHVRRGTIDLSTISMLVIDEADQMLLMGFLPDIDTITAEIFASRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ +E+  +++ +++ PK I++     T  +I H  V T  +  +K   +  L++
Sbjct: 180 MLFSATIPNEIHALAKKYMKQPKHIQIAEKQVTVASINHYAVETTDR--RKEGTMLHLIK 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIFC  K  V  L   L+ +G    A+HG+I Q  R + +  F+E  +Q +V
Sbjct: 238 EHNPYL-AIIFCRTKARVQKLTEVLKHEGVECEALHGDIPQSKRNRAMKWFREAKLQYLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV+N+D+P   E YIHR GRTGRA   G+A+TL A  D+  +  I
Sbjct: 297 ATDVAARGLDVEGVTHVYNYDIPQDLETYIHRTGRTGRASGSGEAYTLFAPRDVDFLQMI 356

Query: 361 EKLIEKKVDWL 371
           EK IE  ++ L
Sbjct: 357 EKGIEMPLEKL 367


>gi|152996400|ref|YP_001341235.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150837324|gb|ABR71300.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 632

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 150/373 (40%), Positives = 226/373 (60%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   V+ AV D GY +P+ IQ ++IP +L+  D+ G AQTGTGKTA+F LP+L+ 
Sbjct: 10  FDSLGLIAPVLKAVADLGYEQPSAIQAQSIPYLLEGRDLLGQAQTGTGKTAAFALPLLSR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++      ++   L+L PTRELA QV++ F+ Y +N  +  V  + GG+ ++ Q ++L+R
Sbjct: 70  IDVTDKTTQL---LVLAPTRELAIQVSEAFQSYARNLPDFHVLPIYGGMSYDTQLRQLKR 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  R  L ++ I+ LV+DEAD ML MGFI  ++ I    P TRQ  
Sbjct: 127 GVQVVVGTPGRVMDHIRRKTLKLDGIKALVLDEADEMLRMGFIDDVEWILEQTPPTRQIA 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ- 240
           LFSATM   +++V+   L NPK +++ T +STA TI   +      +  K   L ++L+ 
Sbjct: 187 LFSATMPAVIRQVANRHLNNPKEVKIVTKTSTAMTITQKYWPVSGLH--KLDALTRILEM 244

Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D M   IIF   K   V L   L  +G +  A++G+I Q  R + +   K+G I ++
Sbjct: 245 NEHDGM---IIFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVDRIKKGQIDIL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+  V HV N+D+P   E+Y+HRIGRTGRAGR G A   VA  + + + A
Sbjct: 302 VATDVVARGLDVERVSHVVNYDIPYDTESYVHRIGRTGRAGRSGTAILFVAHRERRMLQA 361

Query: 360 IEKLIEKKVDWLN 372
           IE+   + ++ + 
Sbjct: 362 IERATRQPIESMT 374


>gi|328910410|gb|AEB62006.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens LL3]
          Length = 480

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 147/352 (41%), Positives = 218/352 (61%), Gaps = 6/352 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F +P++   EK        + +++ 
Sbjct: 8   GFEEATPIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIPLV---EKMNPESPNIQAIVIA 64

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA QV++   K G++    V  + GG     Q + L++   +++ TPGR+LDH NR
Sbjct: 65  PTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPHIIVGTPGRLLDHINR 124

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
             + +NN+  +V+DEAD ML+MGFI  I++I S VP   QTLLFSATM   +++++E F+
Sbjct: 125 RTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFM 184

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
             P+ ++V     T   I+  ++    Q  KK   L +LL  Q + +  I+F   K+ V 
Sbjct: 185 TEPEHVKVKAKEMTVSNIQQFYLE--VQERKKFDTLTRLLDIQ-SPELAIVFGRTKRRVD 241

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            L  +L  +G++   IHG++ Q  RM  L  FKEG I+++VA+D+AARGLDI  V HV+N
Sbjct: 242 ELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYN 301

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
           FDVP   E+Y+HRIGRTGRAG+ G A T +   +   + AIE+  ++K+D +
Sbjct: 302 FDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRM 353


>gi|333030556|ref|ZP_08458617.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
 gi|332741153|gb|EGJ71635.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
          Length = 378

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 150/379 (39%), Positives = 229/379 (60%), Gaps = 11/379 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   ++ A+ + GY  PTPIQ + I   +   D+ G+AQTGTGKTA+F +P++
Sbjct: 1   MTFKELNIIEPILQALTEKGYSTPTPIQEQAILPAIDHQDILGLAQTGTGKTAAFSIPII 60

Query: 61  ------TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                 ++ ++G  ++  R  R LIL PTRELA Q+ ++ + Y +  +L   ++ GG+  
Sbjct: 61  QHLHLDSLQKEGEEKIAKRAIRALILTPTRELAIQIGESLKDYTRYTDLQYTVIFGGVKQ 120

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
            +Q  +L+ G D+L+ TPGR+LD  ++G + +N ++  V+DEADRMLDMGFI  I+ +  
Sbjct: 121 GSQVNRLKAGVDILVATPGRLLDLMHQGHIKINKVQHFVLDEADRMLDMGFIHDIKRLLP 180

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +P  RQTL FSATM   +  +S + L+NP RIEV   SS  +TIE      + + + K 
Sbjct: 181 RLPKNRQTLFFSATMPRSIASLSRSILKNPIRIEVTPASSVVDTIEQEVY--FVEQNDKK 238

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL +LL   D MK+ ++F   K     +  ++ K G +   IHGN  Q +R + L NFK
Sbjct: 239 DLLVKLLHEGD-MKSVLVFSRTKHGANKIVKAITKAGITSEPIHGNKSQNARQRALENFK 297

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
               +++VA+D+AARG+DI ++  V N+D+PN  E Y+HRIGRTGRAG  GKA T  A  
Sbjct: 298 AHKTRVLVATDIAARGIDIENLELVVNYDLPNIPETYVHRIGRTGRAGNVGKALTFCAAS 357

Query: 353 DIKHIDAIEKLIEKKVDWL 371
           +   +  IEKL + K+  +
Sbjct: 358 ERIFLKDIEKLTKNKLSIV 376


>gi|258621511|ref|ZP_05716544.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM573]
 gi|258586129|gb|EEW10845.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM573]
          Length = 412

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 152/373 (40%), Positives = 221/373 (59%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +   V   GY  PT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 15  MPFSQLGLSDVLTQTVARLGYQTPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPVL 74

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YG++  L    + GG+  +AQ ++L
Sbjct: 75  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGQDTGLKSLAVFGGVDEQAQKQRL 134

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 135 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 194

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  + +P  I +    ++   I    +        K ALL  L+
Sbjct: 195 FLLFSATLSRKVRELAKTAVNDPYEISIAANQASKSNISQWLITV--DKDTKSALLSHLI 252

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 253 NEQQ-WDQALIFIETKHGAAKLVTQLEKRGIQAEAFHSGRSQAIRAQLLEDFKSGKIKYL 311

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 312 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRADAVGEAISFVSKDNFKNLCM 371

Query: 360 IEK----LIEKKV 368
           IE     LIE++V
Sbjct: 372 IESRLGHLIERRV 384


>gi|284042564|ref|YP_003392904.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
 gi|283946785|gb|ADB49529.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
           14684]
          Length = 481

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 147/360 (40%), Positives = 218/360 (60%), Gaps = 6/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ A+ D GY  P+PIQ + IP +L  +D+ G AQTG+GKTA+F LP++  
Sbjct: 4   FADLGLSAPVLEALRDVGYENPSPIQEQAIPPLLAGNDMIGQAQTGSGKTAAFGLPLMEY 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     V+    L+L PTREL  QV      YG    + V  + GG P  +Q  +L  G
Sbjct: 64  VDPSDRDVQ---ALVLTPTRELCIQVTQALRSYGARKGIDVVAVFGGAPIRSQQAQLRAG 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ T GR+ D  +R  L+++    +V+DEAD MLD+GF+  ++ I +L P +RQT L
Sbjct: 121 GQIVVGTVGRVKDLISRHSLMLHGTRFVVLDEADEMLDLGFLEDVEKILALTPGSRQTAL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++K+SE +L NP  ++V   + T +T+E  F    +Q  K   +L  +L+S+
Sbjct: 181 FSATMPPEIRKLSERYLYNPVHVKVRAATLTVDTVEQ-FSLEMSQRDKP-DMLGTVLESE 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F   K     L  +L  +G +V A+HG++ Q  R  ++ +FK G + ++VA+
Sbjct: 239 KP-DQAIVFVRTKIRCDQLYRTLRDRGMNVKALHGDMSQGQRDGVMLSFKSGRLPILVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV NFDVP   + Y+HRIGRTGR GR G+A T    +  + I+AIE+
Sbjct: 298 DVAARGLDISSVTHVVNFDVPTSPDVYVHRIGRTGRVGRSGRAITFYDSKQKRDIEAIER 357


>gi|167752757|ref|ZP_02424884.1| hypothetical protein ALIPUT_01018 [Alistipes putredinis DSM 17216]
 gi|167659826|gb|EDS03956.1| hypothetical protein ALIPUT_01018 [Alistipes putredinis DSM 17216]
          Length = 393

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 155/389 (39%), Positives = 226/389 (58%), Gaps = 24/389 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L ++  ++ A+ + GY+ PTPIQ K IP+ L   D+ GIAQTGTGKTA+F +P+L
Sbjct: 3   MTFNELKITDPILKAIGEKGYLAPTPIQQKGIPVALDGRDMLGIAQTGTGKTAAFAIPIL 62

Query: 61  TILEKG--------------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYN 100
             L  G                       VR  R LIL PTRELA Q+ D+F  YGK   
Sbjct: 63  QHLSSGMQAEPTDVPRRNRRGRNHGREYGVRPIRALILTPTRELAVQIGDSFSDYGKYVG 122

Query: 101 LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160
           L    + GG+    Q + L  G D+LI TPGR+ D   +  + ++ I   V+DEADRMLD
Sbjct: 123 LKHLTIFGGVKQGPQVEALRGGVDILIATPGRLHDLIGQRFVELDAITHFVLDEADRMLD 182

Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
           MGF+  I+ +  L+P +RQTL FSATM  ++  +S++ L +P R+EV   +S  + I+  
Sbjct: 183 MGFVADIKRLLPLLPKSRQTLFFSATMPADIVALSKSMLTDPVRVEVTPVASAVDAIDQR 242

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
               + +  +K  LL  LL+ +D  K+ ++F   K    N+   L K G    AIHGN  
Sbjct: 243 VY--FVEKPEKKKLLVSLLREED--KSVLVFSRTKHGADNISRLLSKSGIRSEAIHGNKS 298

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q  R ++L++FK G I++MVA+D+AARG+DI ++  V N+D+P+  E Y+HRIGRTGRAG
Sbjct: 299 QNHRQRVLTDFKSGKIRVMVATDIAARGIDIRELEIVINYDLPDVPETYVHRIGRTGRAG 358

Query: 341 RHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
             G A T    ++   +  I++L  KK++
Sbjct: 359 HSGTALTFCTPDERPLMKDIQRLTGKKLN 387


>gi|120602237|ref|YP_966637.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           vulgaris DP4]
 gi|120562466|gb|ABM28210.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4]
          Length = 462

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 147/365 (40%), Positives = 214/365 (58%), Gaps = 8/365 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADL LSP+++ A+   GY +PTP+Q   IP  L   DV  +A TGTGKTA+FVLPML
Sbjct: 1   MTFADLSLSPRLLAALDGMGYRQPTPVQRGAIPPALAGEDVLALAATGTGKTAAFVLPML 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G R  VR    L++ PTRELA Q  D+  + G    L    + GG+   AQ  +L
Sbjct: 61  QRLMDGPRGAVR---ALVVAPTRELAEQTHDHVRRLGSMSRLRSTTIYGGVGVVAQALRL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G +V++  PGR+LDH  RG L ++++E+LV+DE D + D+GF+  ++ +  +VP T Q
Sbjct: 118 RAGVEVVVGCPGRLLDHIRRGNLDLSSLEVLVLDEGDSLFDLGFLADVRMLLGMVPTTCQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM D ++ ++   L+ P  ++V+     A T+ H      A    +  LL+  L
Sbjct: 178 RMLFSATMPDAVRVLAAEALRQPVTVQVDA-VQPASTVHHALYPVPAHL--RTPLLKTFL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +S     + ++F   +     L   L+  GFSV  + G + QR R+  L  F++G   ++
Sbjct: 235 RSGPE-GSVVVFVRTRHGARRLWQQLDNVGFSVTCLQGKLSQRRRLAALEGFRDGRYDVL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV N+DVP+ A+ YIHR+GRTGRA R+G A T V   D   +  
Sbjct: 294 VATDVAARGLDISQVTHVVNYDVPSTADAYIHRVGRTGRAARNGTAMTFVTPADEAQVRN 353

Query: 360 IEKLI 364
           IE+ +
Sbjct: 354 IERAL 358


>gi|127512812|ref|YP_001094009.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126638107|gb|ABO23750.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 488

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 148/366 (40%), Positives = 220/366 (60%), Gaps = 4/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+LGL   V+  +   GY +PTPIQ + IPL L+  ++   AQTG+GKTA+FVLPML
Sbjct: 1   MTFANLGLPNAVLTNLEQLGYSQPTPIQQEAIPLALKGKNLIAAAQTGSGKTATFVLPML 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           T L +G+  R +  R +IL PTREL  QV D   +YGK   L    + GG+  +AQ ++L
Sbjct: 61  TTLMQGQTQRKKRARAIILAPTRELVLQVNDRIGEYGKGLGLVSMAVYGGVDVQAQKQQL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR+ D + +  +  + +E+LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IEGVDIVVATPGRLRDLYTQRAIRFDEVELLVLDEADRMLDMGFIEDITKILDTLPEERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++  ++++++  +     + V     +   IE     T     KK ALL QL+
Sbjct: 181 NLLFSATLSRPVRELAKQAVPKAIHLSVTKNQDSQPDIEQWI--TTVDKDKKSALLSQLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +     +IF   K     L   LEK+G     IH    Q  R +IL++FK G I  +
Sbjct: 239 KD-NAWPQALIFIETKHGAAKLVSQLEKRGIQAECIHSGRTQAVREQILADFKAGKIAYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++ ++ARG+DI ++  V N+D+P  A+ Y+HRIGRTGRAG  G+A +LV+K+D K++  
Sbjct: 298 ISTGISARGIDIDNLPLVINYDLPFPADEYVHRIGRTGRAGAKGEAISLVSKDDFKNLCM 357

Query: 360 IEKLIE 365
           IE  ++
Sbjct: 358 IESRLD 363


>gi|91794665|ref|YP_564316.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91716667|gb|ABE56593.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 611

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 143/367 (38%), Positives = 228/367 (62%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ A+ + GY  PTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L  
Sbjct: 8   FRELGLSENLLRALDELGYENPTPIQSASIDPLMAGKDIIGQAQTGTGKTGAFALPLLNK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++    ++  P+ L+L PTRELA QVA+ F  Y K+     V  + GG     Q   L+R
Sbjct: 68  VD---MKINAPQILVLAPTRELAVQVAEAFGSYAKHMKGFHVLPIYGGQSMHQQLSALKR 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L +++++ LV+DEAD ML MGFI  I+ +    P   Q  
Sbjct: 125 GPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWVLEHKPKDSQLA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +++++V+   L NP  I +   ++T E+I+  FV   +Q++K  AL++ +L+ 
Sbjct: 185 LFSATMPEQIKRVAAKHLTNPVNISIAASTTTVESIDQRFVQV-SQHNKLEALVR-VLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++T +  IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++A
Sbjct: 243 ENT-EGVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +GHV N+D+P   E Y+HRIGRTGRAGR G A   V   +++ +  IE
Sbjct: 302 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 361

Query: 362 KLIEKKV 368
           +    ++
Sbjct: 362 RATNSRI 368


>gi|224060117|ref|XP_002300045.1| predicted protein [Populus trichocarpa]
 gi|222847303|gb|EEE84850.1| predicted protein [Populus trichocarpa]
          Length = 791

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 145/367 (39%), Positives = 222/367 (60%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G   +++  VL+AG+  PTPIQ ++ P+ LQ  D+  +A+TG+GKT  +++P    
Sbjct: 167 FETTGFPSEILKEVLNAGFSAPTPIQAQSWPIALQSRDIVAVAKTGSGKTLGYLIPGFIH 226

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L++     R+ P  L+L PTRELA Q+     K+GK+   +   L GG P   Q K+L+R
Sbjct: 227 LKRSCNDPRLGPTVLVLSPTRELATQIQVEAVKFGKSSRFSCTCLYGGAPKGPQLKELDR 286

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GAD+++ TPGR+ D     ++ ++ +  LV+DEADRMLDMGF P I+ I   VP  RQTL
Sbjct: 287 GADIVVATPGRLNDILEMRRVSLSQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTL 346

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY---SKKCALLQQL 238
           +++AT   E++K++ + L NP ++ +    +  E + +  +  Y +     +K   L+Q+
Sbjct: 347 MYTATWPKEVRKIAADLLVNPVQVNIG---NVDELVANKSITQYVELLAPLEKHRRLEQI 403

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+SQ++    IIFC+ KK    L  +L +Q F   AIHG+  Q  R  +LS F+ G   +
Sbjct: 404 LRSQESGSKIIIFCSTKKMCDQLSRNLTRQ-FGAAAIHGDKSQSERDYVLSQFRTGRSPI 462

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G A+T    +D KH  
Sbjct: 463 LVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDAKHAS 522

Query: 359 AIEKLIE 365
            + K++E
Sbjct: 523 DLIKVLE 529


>gi|260913800|ref|ZP_05920275.1| ATP-dependent RNA helicase DeaD [Pasteurella dagmatis ATCC 43325]
 gi|260632113|gb|EEX50289.1| ATP-dependent RNA helicase DeaD [Pasteurella dagmatis ATCC 43325]
          Length = 610

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 148/370 (40%), Positives = 232/370 (62%), Gaps = 13/370 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L  
Sbjct: 8   FNDLGLPEFLLDAVSDLGFETPSPIQQTCIPYLLDGNDVLGMAQTGSGKTAAFSLPLLAQ 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           ++  +   + P+ L++ PTRELA QVAD    F KY KN  +    L GG  ++ Q + L
Sbjct: 68  IDLDK---KYPQMLVMAPTRELAIQVADACEQFCKYAKNTRIVT--LYGGQRYDIQLRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  RG L ++N+  +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 KQGAQVVVGTPGRILDHIRRGTLDLSNLRFMVLDEADEMLRMGFIDDVETVMAELPEEHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQL 238
           T LFSATM + ++++++ F+++PK I++ +  +T   I + C+   Y    +K   L + 
Sbjct: 183 TALFSATMPEPIRRITKRFMKDPKEIKIKSTQTTNPDITQSCW---YVHGFRKNDALLRF 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ ++     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ +
Sbjct: 240 LEVEN-FDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLERLRNGSLDI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + + 
Sbjct: 299 LVATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRTGRALLFVEPRERRLLR 358

Query: 359 AIEKLIEKKV 368
            IE L +K +
Sbjct: 359 NIEHLTKKPI 368


>gi|167921338|ref|ZP_02508429.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei BCC215]
          Length = 465

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 154/393 (39%), Positives = 225/393 (57%), Gaps = 16/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 10  FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    L+L PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 70  LDARRFDVQ---ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL++PKR+++      ++  +  +  T  +      LL    + 
Sbjct: 187 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRP 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I FCN K+   +L   L  QGF V A+HG ++QR R ++L  F   +  ++VA
Sbjct: 247 VST----IAFCNTKQQCRDLLDVLHAQGFHVLALHGELEQRERDQVLIRFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E Y+HRIGRTGRA + G A +L +  ++  +  IE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 362

Query: 362 KLIEKKVDW-------LNGDLSSLNPPLEKIDI 387
           + + ++V+W         GD + L PP+E + I
Sbjct: 363 QALAREVEWHPLAELKAGGD-APLLPPMETLQI 394


>gi|330997890|ref|ZP_08321724.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
 gi|329569494|gb|EGG51264.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
          Length = 483

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 152/425 (35%), Positives = 246/425 (57%), Gaps = 25/425 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF DL LS +V+ A+ D  + + TPIQ   IP++L+  D+ G+AQTGTGKTA+F+LP+L
Sbjct: 1   MDFYDLDLSDQVLDALDDMNFTECTPIQEHAIPVILEGRDMIGVAQTGTGKTAAFLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
           + L  G    +    +I+ PTRELA Q+    E +    N++   + GG   I +E + +
Sbjct: 61  SKLSDGGYPEKAINCIIMSPTRELAQQIDQAMEGFSYYMNVSSVAVYGGNDGIRYEQEKR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   V+DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLAMGADVIIATPGRLISHLSLGNVDLSEVSFFVLDEADRMLDMGFSDDIMQIVKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q ++   L +P  +++       + ++  +V   AQ   K +L+++
Sbjct: 181 RQTIMFSATMPRKIQDLARTILHDPVEVKLAVSKPADKIVQSAYVCYEAQ---KVSLVKK 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   +   +  I+F + K  V ++  +L + GF V A+H +++Q+ R +++  FK   I 
Sbjct: 238 LFAERPPHRV-IVFASSKLKVKDMAIALGRAGFKVGAMHSDLEQQERDEVMYKFKAQQID 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V NFDVP+ AE+Y+HRIGRT RA   G+A TLV+++D +  
Sbjct: 297 VLVATDIVARGIDIDDIQLVINFDVPHDAEDYVHRIGRTARANNDGEAITLVSEKDQQRF 356

Query: 358 DAIEKLIEKKVDWLN-----GDLSSLNP-------------PLEKIDIAQHNHARKNNPI 399
            +IE  +E +++  +     G+  +  P             P       +  + RK +PI
Sbjct: 357 ASIEHFLETEIEKRSLPEGLGEGPAYRPEKGGEKGNGRHGSPRHGRRQGKSGNRRKTSPI 416

Query: 400 PQKST 404
           PQ  T
Sbjct: 417 PQTHT 421


>gi|104779961|ref|YP_606459.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95108948|emb|CAK13644.1| putative ATP-dependent RNA helicase, DEAD box family (RhlE)
           [Pseudomonas entomophila L48]
          Length = 443

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 150/368 (40%), Positives = 219/368 (59%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+FA LGL   +V  +    Y  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MNFAKLGLIEPLVRTLQALDYTTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               LE  +      R L+L PTRELA QV  N  +Y +N  L+   + GG+    Q  +
Sbjct: 61  QRLALEGEKVAANSVRALVLVPTRELAEQVHANVREYAENLPLSTYAVYGGVSINPQMMR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+LD F +  +    ++ LV+DEADRMLD+GF   +Q + + +P  R
Sbjct: 121 LRRGVDLLVATPGRLLDLFRQNAIKFGQVQTLVLDEADRMLDLGFAEELQAVYAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D+++ ++   L +P  IEV+  ++ A T++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNAAASTVKQWLVPV--DKKRKADLFCHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ Q   K  ++F   +  V  L   L  +G +   IHG+  Q +R + L +FK   +Q+
Sbjct: 239 LRKQ-RWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLA 357

Query: 359 AIEKLIEK 366
           +IE LI +
Sbjct: 358 SIETLIRQ 365


>gi|330817466|ref|YP_004361171.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3]
 gi|327369859|gb|AEA61215.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3]
          Length = 524

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 151/390 (38%), Positives = 230/390 (58%), Gaps = 34/390 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 40  FASLGLSPEIVSALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 99

Query: 61  -TILEKGRAR--------------------VRMPRTLILEPTRELAAQVADNFEKYGKNY 99
              L+K +A+                    V  P  L+L PTRELA QV      YGK+ 
Sbjct: 100 FAQLQKTQAQQPRAPREPQSADRRQRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 159

Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L    ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRM
Sbjct: 160 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 219

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV----NTPSSTA 214
           LDMGFI  I+ I +  P +RQT+LFSAT+  ++  ++   L++P+RIE+       ++ A
Sbjct: 220 LDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTSRLLKDPERIEIVQKMEARTNIA 279

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +T+ +           K  LL  LL+  D +   IIF   K +   L   L   GF   A
Sbjct: 280 QTVHYV-----DDRDHKDRLLDHLLRD-DALDQAIIFTATKIDADQLAGRLADAGFESAA 333

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIG
Sbjct: 334 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 393

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RTGRAGR G A +LV   +   +  IE+ +
Sbjct: 394 RTGRAGRSGIAVSLVHHAEQGALKRIERFV 423


>gi|84490017|ref|YP_448249.1| helicase [Methanosphaera stadtmanae DSM 3091]
 gi|84373336|gb|ABC57606.1| predicted helicase [Methanosphaera stadtmanae DSM 3091]
          Length = 583

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 144/370 (38%), Positives = 225/370 (60%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL +SP++  AV D G+ + +PIQ   IP +L   DV G AQTGTGKTA+F +P+L
Sbjct: 4   LKFKDLNISPEIQKAVADMGFEEASPIQSLAIPQILAHKDVTGQAQTGTGKTAAFGIPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             ++     ++    +IL PTRELA QVA+   K       + V  + GG P + Q K L
Sbjct: 64  ENIDSEDNNLQ---AIILCPTRELAIQVAEELRKLSVYLPKIDVLPVYGGQPIDRQIKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G  ++I TPGR++DH +RG L +NNI+ +++DEAD MLDMGF   I+ I   +P+ RQ
Sbjct: 121 QKGVQIIIGTPGRVMDHIDRGTLSLNNIKTVILDEADEMLDMGFREDIEYILEDIPYERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT+  E+ ++++ +  NP+ ++V     T   +E  +         +       L
Sbjct: 181 FLLFSATLPQEILQLAQRYQTNPEIVKVTKHELTTPDVEQKYFEVKEDMKLELLSRLLDL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     ++FCN K+ V  L   L+ +G+    +HG++ Q  R +++S FK+G I+++
Sbjct: 241 HDFDL---SLVFCNTKRKVDKLVSHLQIRGYLADGLHGDLTQNQRDRVMSKFKKGNIEIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V  VFNFD+PN  E Y+HRIGRTGRAG+ GKA++ V+  +I  +  
Sbjct: 298 VATDVAARGIDVGGVEAVFNFDIPNDNEYYVHRIGRTGRAGKTGKAYSFVSGREIYQLRD 357

Query: 360 IEKLIEKKVD 369
           I++  + K++
Sbjct: 358 IQRYAKTKIE 367


>gi|315608792|ref|ZP_07883768.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae
           ATCC 33574]
 gi|315249486|gb|EFU29499.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae
           ATCC 33574]
          Length = 579

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 162/445 (36%), Positives = 263/445 (59%), Gaps = 19/445 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  +   TP+Q K IP +L+ +DV G+AQTGTGKTA+++LP+L
Sbjct: 1   MYFDELDLNDNVLDALYDMRFDSCTPVQEKCIPEILKGNDVLGVAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIG--GIPFEAQN 116
           + L+ G         +I+ PTRELA Q+    + +G   N   +VA+  G  G  ++ + 
Sbjct: 61  SKLDDGGYPKDAINCVIMSPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQEL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  GADV+I TPGR++ H + G + M+ +   V+DEADRMLDMGF   I  I  L+P 
Sbjct: 121 KSLRLGADVVIATPGRLISHISLGNVDMSKVSYFVLDEADRMLDMGFSEDILQIAKLLPD 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T QT++FSATM  +++++++  L+NP  I++   S  AE I+      Y   ++K  +++
Sbjct: 181 TCQTIMFSATMPAKIEELAKTLLKNPVEIKLAV-SKPAEKIKQEAYVCYE--TQKLGIIK 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            + ++ D +K  IIFC  K  V  +  +L+++  +   +H +++Q  R  I+  FK G +
Sbjct: 238 DIFKAGD-LKRVIIFCGSKMKVKQVNAALQRKHINCGEMHSDLEQAERDDIMFKFKSGQL 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ ARG+DI D+  V N+DVP+ AE+Y+HRIGRT RA R G+A TLV+++DI H
Sbjct: 297 DVLVATDIVARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGRAITLVSEDDIYH 356

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH-NHARKNNPIPQKSTGFDRRKKNYSS 415
              IEK +EK+V+ +         PL   D+ +   + R++ P   ++T   RR+K+   
Sbjct: 357 FQQIEKFLEKEVEKI---------PL-PADLGEAPEYTRQSRPSKGRTTAKSRRRKDRDQ 406

Query: 416 QKSHIPLKESEKISKLQQDIQENDA 440
           Q          + ++ +QD +   A
Sbjct: 407 QAHRHKPNNQRRPARPEQDKEREAA 431


>gi|258593189|emb|CBE69527.1| ATP-dependent RNA helicase [NC10 bacterium 'Dutch sediment']
          Length = 407

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 147/374 (39%), Positives = 224/374 (59%), Gaps = 9/374 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   +   +  AG+ + TPIQ +T+PL L   D+ G AQTG+GKTA+F++P+   
Sbjct: 4   FDTFSLPASIARGIEAAGFTQCTPIQAETLPLALAGKDIAGQAQTGSGKTAAFLIPLFVR 63

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L   R       PR LIL PTRELA Q+  + E  G    LT     GG+ ++ Q   L+
Sbjct: 64  LLTSRHPTLSGAPRALILAPTRELAVQILWDAELLGGFTGLTRLAAYGGVDYQKQRDALQ 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTR 178
           +  D+LI TPGR++D+F +G   ++ +E+LV+DEADRM DMGFI  ++ +   +P    R
Sbjct: 124 QNVDILIGTPGRLIDYFKQGVYELSQVEVLVVDEADRMFDMGFIKDLRFLLRRLPPYHKR 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+ LFSAT++    ++S  F+ NP ++ ++    T + +EH     + +  +K  LL+ L
Sbjct: 184 QSFLFSATLSFREMELSYEFMNNPIKVAISPEQVTVDKVEHLLF--HVEKQEKFRLLRWL 241

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ ++  +  +IF N ++    L   L + GF    I G+IDQR R++I++ FK GT+ +
Sbjct: 242 LQ-REAWQRILIFSNTRQGAERLTDKLVRCGFRAGLISGSIDQRKRLQIITKFKAGTLPI 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RGL +  V HV N+D+P   E+Y+HRIGRT RAG  GKA +L  +E +  +D
Sbjct: 301 LVATDVASRGLHVEAVSHVINYDLPQDPEDYVHRIGRTARAGAAGKAISLADEEYVLSLD 360

Query: 359 AIEKLIEKK--VDW 370
           AIE+ I  K  V W
Sbjct: 361 AIERYIGFKIPVQW 374


>gi|326329383|ref|ZP_08195707.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
 gi|325952709|gb|EGD44725.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
          Length = 615

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 146/361 (40%), Positives = 219/361 (60%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  V+ AV   GY  P+ IQ  TIP +LQ  DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 29  FDSLGLSAGVLEAVKALGYETPSAIQAATIPTLLQGRDVVGLAQTGTGKTAAFALPVLSN 88

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           L+        P+ L+L PTRELA QV + FE+Y  N + + +  + GG  +  Q   L R
Sbjct: 89  LD---VYQNAPQALVLAPTRELALQVCEAFERYASNLDGVRILPVYGGQGYGPQLTALRR 145

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGRI+DH  +G L ++ +  LV+DEAD ML+MGF   ++ I +  P  +Q  
Sbjct: 146 GVHVVVGTPGRIMDHLEKGTLDLSQLRFLVLDEADEMLNMGFAEDVETILAETPEDKQVA 205

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  +++++S+ +L++ + I V   + T   I   ++     Y +K   L ++L+ 
Sbjct: 206 LFSATMPAQIRRLSKKYLRDAEEISVKAKTQTNTNITQRYL--MVSYPQKVDALTRILEV 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++  +  I+F   K    +L   L  +GF+  AI+G+I Q  R K ++  K+G++ ++VA
Sbjct: 264 EN-FEGMIVFTRTKSETESLAEKLRARGFAATAINGDIAQAQREKTVNQLKDGSLDILVA 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E Y+HRIGRTGRAGR G A + V   +   + AIE
Sbjct: 323 TDVAARGLDVERISHVVNYDLPTDVEAYVHRIGRTGRAGRTGDAISFVTPRERWLLRAIE 382

Query: 362 K 362
           K
Sbjct: 383 K 383


>gi|21673432|ref|NP_661497.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
 gi|21646533|gb|AAM71839.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
          Length = 657

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 144/373 (38%), Positives = 226/373 (60%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F  L L+  ++ A+   GY  PTPIQ  TIPL+L+  DV G AQTGTGKTA+F LP+L
Sbjct: 27  VNFRSLELAEPLLRALEAVGYENPTPIQASTIPLLLEGRDVLGQAQTGTGKTAAFALPVL 86

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           + ++        P+ L+L PTRELA QVA+ F  Y +      V  + GG  +  Q + L
Sbjct: 87  SNID---LSATDPQALVLAPTRELAIQVAEAFHTYAEFMPGFHVLPIYGGQDYGVQIRNL 143

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGR++DH  +G L ++N++ LV+DEAD ML MGFI  ++ I    P +RQ
Sbjct: 144 KRGVHVVVGTPGRVMDHMRKGTLNLDNLKCLVLDEADEMLRMGFIDDVEWILDQTPESRQ 203

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   + +++  +L+ P  I + T ++T ETI   +      +  K   L ++L
Sbjct: 204 VALFSATMPQPIVRIARKYLKAPAEITIQTKTTTVETIRQRYWMVGGHH--KLDALTRIL 261

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +      IIF   K   V L   L+ +G++  A++G++ Q +R + +   K+GT+ ++
Sbjct: 262 EVE-PFDGIIIFVRTKTETVALAEKLQARGYAAAALNGDMVQSARERTIEQLKDGTLNIV 320

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   V+  +   + A
Sbjct: 321 IATDVAARGLDVERISHVINYDIPTDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLFA 380

Query: 360 IEKLIEKKVDWLN 372
           IE+   K+++ + 
Sbjct: 381 IERATRKRIELME 393


>gi|94265968|ref|ZP_01289692.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93453471|gb|EAT03884.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 369

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 142/372 (38%), Positives = 215/372 (57%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA       +   +   GY  PTPIQ + IP + +  D+ G+AQTGTGKTA+FVLP+L
Sbjct: 1   MSFAQFDFDATLTANIAACGYQAPTPIQTQAIPEIRRGRDIMGLAQTGTGKTAAFVLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G R RVR    +I+ PTRELA Q+  N  + G+   +    + GG+    Q K  
Sbjct: 61  QKLSAGPRGRVR---AVIVAPTRELAEQIHVNIGELGRQTGIRSVAVYGGVSKFGQLKAF 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++++  PGR+LDH +   + +  +E+LV+DEAD M DMGF+P I+ +   +P  RQ
Sbjct: 118 KAGVEIIVACPGRLLDHLDSRDVNLGAVEMLVLDEADMMFDMGFMPAIKKLLKYLPAKRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  E++ ++++ L++P R+++N    TA      +     +   K ALL+Q++
Sbjct: 178 NLLFSATMPAEIRHLADSILKDPARVQINHTQPTALVAHKLY---RVEKQGKGALLKQVM 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q +    + ++F   K     L  +LEK G    A+ GN+ Q  R   +  FK+G   +M
Sbjct: 235 Q-ESAFSSALVFTRTKHAAKKLALNLEKAGHRAVALQGNMSQNKRKAAMEGFKQGRFNIM 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HV N+D+P   E Y HRIGRTGRA R+G+A+T    ED   +  
Sbjct: 294 VATDIAARGIDVAGISHVINYDMPATVEAYTHRIGRTGRAERNGEAYTFATAEDKVIVRQ 353

Query: 360 IEKLIEKKVDWL 371
           IE+ I  ++  L
Sbjct: 354 IERAIGSRMITL 365


>gi|160946735|ref|ZP_02093938.1| hypothetical protein PEPMIC_00693 [Parvimonas micra ATCC 33270]
 gi|158447119|gb|EDP24114.1| hypothetical protein PEPMIC_00693 [Parvimonas micra ATCC 33270]
          Length = 580

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 220/368 (59%), Gaps = 6/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  LS +V+ AV++ G+ +P+PIQ + IP +L   D+ G AQTGTGKTASF +P   
Sbjct: 4   NFNDFNLSKEVLKAVVEMGFEEPSPIQKQAIPTMLNNEDIIGQAQTGTGKTASFGIP--- 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I+EK     +  + ++L PTREL+ QVA+   K  K   +TV  + GG P E Q + L+ 
Sbjct: 61  IVEKVNKNSKTTQAMVLCPTRELSIQVAEEISKLAKYKGVTVVPIYGGQPIERQIRSLKM 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  R  L   NI+  V+DEAD M DMGF   I+ I   +P+ RQT 
Sbjct: 121 GVQVIVGTPGRVIDHIKRKTLKTENIKTFVLDEADEMFDMGFREDIEKIIGFLPYERQTT 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+   +  +   P+ I+V     T   +   + A   +++ K  +L ++L  
Sbjct: 181 FFSATMDHEMMDFAARYQSEPRLIKVVPKELTVPKVTQYYFA--LKHNMKLEILSRILDV 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q+  K  ++FCN KK V +L   L+ +G+    +HG++ Q  R  +++ F+  TI ++VA
Sbjct: 239 QNP-KLTVVFCNTKKMVDDLTAGLQSRGYFADGLHGDLKQIQRDGVMNKFRNSTIDILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  V N+D+P   E Y+HRIGRT RAGR G A + V+  ++  +  I+
Sbjct: 298 TDVAARGIDVDDVDLVINYDMPQDVEYYVHRIGRTARAGREGTAISFVSPREMNTLSQIQ 357

Query: 362 KLIEKKVD 369
           K  + K++
Sbjct: 358 KYTKTKIE 365


>gi|261250797|ref|ZP_05943371.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891]
 gi|260937670|gb|EEX93658.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891]
          Length = 660

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 147/370 (39%), Positives = 224/370 (60%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+   G+V PTPIQ   IP +L   D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L+  +   R P+ +IL PTRELA QVA   +  GKN   L V  + GG     Q + L
Sbjct: 66  NKLDLAQ---RKPQAIILAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D  NR +L ++ +   V+DEAD ML+MGF+  +  I    P + Q
Sbjct: 123 KNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPSSAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   L+ + E FL++P+ I+V   + T + +E  F        +K   + +LL
Sbjct: 183 RVLFSATMPPMLKSIVERFLRDPETIDVAGKNHTVDKVEQQFWVVKG--VEKDEAMSRLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T  + I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 241 ETEETDAS-IVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    ++ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRT 359

Query: 360 IEKLIEKKVD 369
           IE++ +  ++
Sbjct: 360 IERVTKSSME 369


>gi|225011497|ref|ZP_03701935.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-2A]
 gi|225004000|gb|EEG41972.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-2A]
          Length = 415

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 146/374 (39%), Positives = 234/374 (62%), Gaps = 12/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   ++ A+   GY +PTPIQ + IP++L+ HD+ G+AQTGTGKTA+F +P+L
Sbjct: 1   MTFKDLKLELPILKALEKQGYTQPTPIQEQAIPILLKGHDLLGVAQTGTGKTAAFGIPIL 60

Query: 61  TILEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L K    G+ + R  + L++ PTRELA Q+A+NF  Y +  +L   ++ GG+    Q 
Sbjct: 61  NHLLKENNSGQGK-RKIKALVVTPTRELAIQIAENFTDYSQFTHLRNTVIFGGVKQSKQV 119

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L++G D+L+ TPGR+LD  N+G +   +++ +V+DEAD+MLDMGFI  ++ I + +P 
Sbjct: 120 ASLQQGVDILVATPGRLLDLMNQGYITFRDLKYVVLDEADQMLDMGFIHDVKKIIAKLPP 179

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ+L FSATM   + ++S+  L + +R+ +    +TAE ++      +   + K  LL 
Sbjct: 180 NRQSLFFSATMPKTIVELSQKMLGDFERVTIKPEQATAEKVKQGVY--FVSKNNKPNLLI 237

Query: 237 QLL--QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            LL  + QD++   ++F   K     +  +L+K      AIHGN  Q  R K L  FK+G
Sbjct: 238 HLLDQRPQDSV---LVFSRTKHGANKIVKTLDKAKIKSAAIHGNKSQAQRQKALGEFKDG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           ++++++A+D+AARG+D+ D+  V N+D+PN +E Y+HRIGRTGRA   G A +    ++ 
Sbjct: 295 SLKVLIATDIAARGIDVDDLALVINYDLPNVSETYVHRIGRTGRASASGIALSFCMGDER 354

Query: 355 KHIDAIEKLIEKKV 368
            ++  IEKLI+++V
Sbjct: 355 PYLKDIEKLIKQQV 368


>gi|297571406|ref|YP_003697180.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931753|gb|ADH92561.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 620

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 142/367 (38%), Positives = 218/367 (59%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV D G+  PT IQ + IPL+L+  DV G+AQTGTGKTA+F LPML  
Sbjct: 7   FADLNLPETILSAVTDLGFTSPTAIQEQAIPLLLEGRDVLGVAQTGTGKTAAFALPMLAH 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121
           ++      R  + L+L PTRELA Q A+    +  +   L V  + GG  +  Q   L  
Sbjct: 67  VDPNN---RHVQALVLAPTRELALQGAEAINTFAARTGGLDVVAVYGGSAYGPQLGALRD 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++D  +RG L ++ I   V+DEAD ML MGF   ++ I + +P  R + 
Sbjct: 124 GAQVVVGTPGRVMDMIDRGALDLSTIRYFVLDEADEMLRMGFAEDVEKIATGLPEERISA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  +++ V+E  L NP  ++V++PSST +TI   +     ++  K   L ++L +
Sbjct: 184 LFSATMPKQIRMVAETHLNNPAEVQVSSPSSTVDTITQTYAVVPTRH--KIGALARVLAT 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     ++F   +    +L   L  +G    A+ G++ Q+ R K++   ++G+I ++VA
Sbjct: 242 TEA-DAALVFVRTRATAEDLAIELSTRGVQAAALSGDVAQKDREKLVDRLRQGSIDVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V NFD+P   E Y+HRIGRTGRAGR G A + V  ++ + +  IE
Sbjct: 301 TDVAARGLDVERIGLVVNFDIPREVETYVHRIGRTGRAGREGTALSFVTPKEKQRLRRIE 360

Query: 362 KLIEKKV 368
           K+   ++
Sbjct: 361 KVTRTQM 367


>gi|145727|gb|AAA23674.1| deaD [Escherichia coli]
          Length = 571

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 25  FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L+L PTRELA QVA+    + K+   + V  L GG  ++ Q + L +
Sbjct: 85  LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT 
Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++  F++ P+ + + +  +T   I   +   +    +K   L + L++
Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++A
Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +++I+
Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378

Query: 359 AIEKLIEKKVDWLNGDL 375
              KL   +V+  N +L
Sbjct: 379 RTMKLTIPEVELPNAEL 395


>gi|167563223|ref|ZP_02356139.1| DEAD/DEAH box helicase domain protein [Burkholderia oklahomensis
           EO147]
 gi|167570404|ref|ZP_02363278.1| DEAD/DEAH box helicase domain protein [Burkholderia oklahomensis
           C6786]
          Length = 509

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 149/387 (38%), Positives = 228/387 (58%), Gaps = 31/387 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLSP++V A+  AGY KPTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 42  FASLGLSPEIVSALQAAGYAKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 101

Query: 63  L--------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNYN-L 101
                          ++G  R R P+       L+L PTRELA QV      YGK+   L
Sbjct: 102 FAQLQKTQAQQPREPQQGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRL 161

Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
               ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRMLDM
Sbjct: 162 RTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDM 221

Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTAETI 217
           GFI  I+ I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+     + ++ A+T+
Sbjct: 222 GFIDDIETIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIQQRLESRTNIAQTV 281

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
            +           K  LL  LL+    +   IIF   K +   L   L   GF   A+HG
Sbjct: 282 HYV-----DDRDHKDRLLDHLLRDT-ALDQAIIFTATKIDADQLAGRLADAGFESAALHG 335

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 336 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 395

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RAGR G A +LV   +   +  IE+ +
Sbjct: 396 RAGRSGTAVSLVHHAEQGALKRIERFV 422


>gi|326578004|gb|EGE27868.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis O35E]
          Length = 581

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 228/368 (61%), Gaps = 8/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGL+  ++ A+  +GY  PTPIQ K IP  L   D+   AQTG+GKTA+FVLP+L  
Sbjct: 20  FSDLGLNKPILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDK 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           + +     +  + LIL PTRELA QV D+  +YG    N+    L+GG P+  Q + L++
Sbjct: 80  MSRKPTIEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKK 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+I TPGR++DH   G++ ++ +++L++DEADRMLDMGF   I+ I    P TRQT+
Sbjct: 140 GVQVIIATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQTV 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + SAT    + K++E+F  NP+++ +   S+   E++ +C       ++ K  +L Q+L 
Sbjct: 200 MSSATWDGAVGKIAESFTVNPEKVSIKVESAHIDESVYYC-----DDFNHKNNILLQVLN 254

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   +K  +IF   K +   L   L + GF    +HG++ Q  R +I+S+ K G   ++V
Sbjct: 255 NP-KIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLV 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + HV N+D+P + E+Y+HRIGR GRAGR G A  L +  D + ++ I
Sbjct: 314 ATDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSINDNRQLEHI 373

Query: 361 EKLIEKKV 368
            + +++++
Sbjct: 374 NRYLKRQM 381


>gi|260777564|ref|ZP_05886457.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605577|gb|EEX31862.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 420

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 155/388 (39%), Positives = 225/388 (57%), Gaps = 11/388 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  +   V   G+  PTPIQ + IP VL+  DV   AQTGTGKTA+F LP+L  
Sbjct: 4   FQHLGLSQALASTVEKLGFDTPTPIQEQAIPHVLEGKDVLAGAQTGTGKTAAFGLPLLNK 63

Query: 63  LEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L    A  R P++     L++ PTRELA QV D+   Y     + +    GG     Q +
Sbjct: 64  LLDQEAS-RDPQSNDVLALVVVPTRELAQQVFDSLTAYASAAEIKIVTAYGGTSMNVQTQ 122

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +G DVLI TPGR+LDH     + +     LV+DEADRMLDMGF+P IQ I   +   
Sbjct: 123 NLRQGCDVLIATPGRLLDHLYCKNINLRKTSYLVLDEADRMLDMGFMPDIQRILKKLNPE 182

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL FSAT    ++ ++   +  P  ++V   +STAE ++           +K  LL  
Sbjct: 183 RQTLFFSATFDKRIKTIAHKLMNEPVEVQVTPSNSTAEKVKQMVYPV--DKKRKAELLAY 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ S++  +  ++F   K+    L   L+  G    +I+G+  Q +R K L +FK GTI+
Sbjct: 241 LIGSRN-WQQVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGTIR 299

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++A+D+AARGLDI  +  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L++K++   +
Sbjct: 300 ALIATDVAARGLDINQLEQVVNFDMPYKAEDYVHRIGRTGRAGQEGLAVSLMSKDEEYLL 359

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLE 383
           +AIE+L++ ++  +WL G   S+  P E
Sbjct: 360 EAIERLLDARLPQEWLQGFEPSIEEPTE 387


>gi|89052606|ref|YP_508057.1| DEAD/DEAH box helicase-like [Jannaschia sp. CCS1]
 gi|88862155|gb|ABD53032.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1]
          Length = 451

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 142/374 (37%), Positives = 229/374 (61%), Gaps = 5/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF--VLPM 59
           DF  LGL P +   +  AG+ +PTPIQ + IPL L  HD+ G+AQTGTGKT +F   L  
Sbjct: 20  DFDMLGLKPILAKTLKTAGFSEPTPIQNQAIPLALDGHDIMGLAQTGTGKTLAFGLPLLE 79

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   G+   +  R LIL PTREL  Q+AD+   + +N  + +A ++GG     Q   L
Sbjct: 80  HLLSLHGKPEPKTARALILAPTRELVNQIADSLRVFTQNTPVKIATVVGGQSIGRQISTL 139

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR++D  +R  + ++ ++ LV+DEAD+MLD+GFI  ++ I   +   RQ
Sbjct: 140 SRGTDILVATPGRLMDLMDRRAIDLSTVKHLVLDEADQMLDLGFIHALRKIAPALGTPRQ 199

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  ++++++  +L NPK+++V+ P   A+ +    V  +     K A L+++L
Sbjct: 200 TMLFSATMPKQMEELASAYLSNPKKVQVSPPGKAADKVTQ--VVHFMPKPAKPAKLREVL 257

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++D     ++F   K     L   L   G++  +IHGN  Q  R + +  F++GTI+++
Sbjct: 258 -NEDPDALVLVFGRTKHGCEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRDGTIKIL 316

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V +V N+++P+  +NY+HRIGRT RAGR G+A    + E++  +  
Sbjct: 317 VATDVAARGIDIPGVAYVINYELPDTPDNYVHRIGRTARAGREGEAIAFCSAEEVDLLVQ 376

Query: 360 IEKLIEKKVDWLNG 373
           IEK+++  +   +G
Sbjct: 377 IEKVMKMSIPVASG 390


>gi|323491514|ref|ZP_08096694.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546]
 gi|323314239|gb|EGA67323.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546]
          Length = 643

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 223/370 (60%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+   G+V PTPIQ   IP +L   D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L+  +   R P+ ++L PTRELA QVA   +  GKN   L V  + GG     Q + L
Sbjct: 66  NKLDLAQ---RKPQAIVLAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D  NR +L ++ +   V+DEAD ML+MGF+  +  I    P + Q
Sbjct: 123 KNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   L+ + E FL++P+ I+V   + T + +E  F        +K   + +LL
Sbjct: 183 RVLFSATMPPMLKSIVERFLRDPETIDVAGKNHTVDKVEQQFWVVKG--VEKDEAMSRLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    ++ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRT 359

Query: 360 IEKLIEKKVD 369
           IE++ +  ++
Sbjct: 360 IERVTKSSME 369


>gi|89099486|ref|ZP_01172362.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
 gi|89085872|gb|EAR64997.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
          Length = 479

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 144/349 (41%), Positives = 215/349 (61%), Gaps = 6/349 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ + TPIQ +TIPL L   D+ G AQTGTGKTA+F +P++  ++  +  ++    +I+ 
Sbjct: 2   GFEEATPIQAETIPLSLANKDLIGQAQTGTGKTAAFGVPLIDKIDTSKDVIQ---GIIIA 58

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA QV++   K G      V  + GG     Q + L++   +++ TPGR+LDH  R
Sbjct: 59  PTRELAIQVSEELYKIGYGKRARVLSIYGGQDINRQIRALKKPPHIIVGTPGRVLDHIKR 118

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
             L ++N+   ++DEAD ML+MGFI  I++I + VP  RQTLLFSATM   +Q+++E F+
Sbjct: 119 KTLRLDNVHTAILDEADEMLNMGFIEDIESILASVPVERQTLLFSATMPAPIQRMAERFM 178

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
           ++P+ I V     T   IE  +V    Q   K  +L +LL  Q + +  IIF   K+ V 
Sbjct: 179 RDPQIIRVKAKEMTVPLIEQFYVEV--QERTKFDVLTRLLNIQ-SPELAIIFGRTKRRVD 235

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            L  +L  +GF    IHG++ Q  RM +L  FKEG+I ++VA+D+AARGLDI  V HV+N
Sbjct: 236 ELAEALNLRGFLAEGIHGDLSQAKRMSVLRKFKEGSIDVLVATDVAARGLDISGVTHVYN 295

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           FD+P   E+Y+HRIGRTGRAG+ G A T +   +  ++  +E+  + K+
Sbjct: 296 FDIPQDPESYVHRIGRTGRAGKEGMAMTFITPREKSYLAVVERTTKSKM 344


>gi|317503390|ref|ZP_07961434.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae
           DSM 15606]
 gi|315665485|gb|EFV05108.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae
           DSM 15606]
          Length = 542

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 148/373 (39%), Positives = 234/373 (62%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  + K TP+Q K IP +L  +DV G+AQTGTGKTA+++LP+L
Sbjct: 1   MYFDELELNNSVLDALYDMRFEKCTPVQEKCIPEILNGNDVLGVAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIG--GIPFEAQN 116
           + L+ G    +    LI+ PTRELA Q+    + +G   N   +VA+  G  G  ++ + 
Sbjct: 61  SKLDDGNYPEKAINCLIMSPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQEL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P 
Sbjct: 121 KSLQLGADVVIATPGRLISHISLGNVDLSKVSFFILDEADRMLDMGFSDDILKIAKKLPQ 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + QT++FSATM D+++++++  L+NPK I++   S  AE I+      Y   ++K  +++
Sbjct: 181 SCQTIMFSATMPDKIEELAKTLLKNPKVIKLAV-SKPAEKIKQSAYVCYE--TQKMGIIK 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            + +S D +K  IIFC  K  V  +  +L+++  +   +H ++DQ  R +++  FK G  
Sbjct: 238 DIFKSDD-LKRVIIFCGSKMKVKQVAGALQRKHINCGEMHSDLDQAMRDEVMFKFKSGQF 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ ARG+DI D+  V N+DVP+ AE+Y+HRIGRT RA R G A T V+ +DI +
Sbjct: 297 DVLVATDIVARGIDIDDISMVINYDVPHDAEDYVHRIGRTARAAREGSAITFVSDDDIYY 356

Query: 357 IDAIEKLIEKKVD 369
              IEK + K+VD
Sbjct: 357 FQLIEKFLGKQVD 369


>gi|59713567|ref|YP_206342.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|59481815|gb|AAW87454.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 634

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 218/369 (59%), Gaps = 7/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L L   ++ A+ D G+V PTPIQ  +IPL+L+  D  G AQTGTGKTA+F LP+L 
Sbjct: 7   EFRQLALDESILSALDDMGFVAPTPIQAASIPLLLEGRDALGKAQTGTGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
              K   +   P+ +I+ PTRELA QVA   +  G+N   L V  + GG     Q + L 
Sbjct: 67  ---KINLKQHNPQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMRALS 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +++ TPGR+ D  NR +L +  +   ++DEAD ML MGF+  +  I    P T Q 
Sbjct: 124 RGAHIIVGTPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPDTAQR 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++ + + +L+ P R++V   + T + +E  F        +K   + +LL+
Sbjct: 184 ILFSATMPPMVKTIVDRYLREPARVDVAGTNHTVDKVEQNFWVVKG--VEKDEAMSRLLE 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + N K G I ++V
Sbjct: 242 TEET-DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    ++ +  I
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQMRMLRTI 360

Query: 361 EKLIEKKVD 369
           E++ +  ++
Sbjct: 361 ERVTKSTME 369


>gi|28900463|ref|NP_800118.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365616|ref|ZP_05778137.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus K5030]
 gi|260877415|ref|ZP_05889770.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AN-5034]
 gi|260898897|ref|ZP_05907338.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus Peru-466]
 gi|260901269|ref|ZP_05909664.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AQ4037]
 gi|28808843|dbj|BAC61951.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308089202|gb|EFO38897.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus Peru-466]
 gi|308090808|gb|EFO40503.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AN-5034]
 gi|308106808|gb|EFO44348.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AQ4037]
 gi|308111459|gb|EFO48999.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus K5030]
          Length = 643

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 223/370 (60%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+   G+V PTPIQ   IP +L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L+  +   R P+ ++L PTRELA QVA   +  GKN   L V  + GG     Q + L
Sbjct: 66  NKLDLDQ---RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA V++ TPGR+ D  NR +L ++ +   V+DEAD ML+MGF+  +  I    P + Q
Sbjct: 123 KNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   L+ + E FL++P  ++V   + T + ++  F        +K   + +LL
Sbjct: 183 RVLFSATMPPMLKNIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKG--VEKDEAMSRLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVD 369
           IE++ +  ++
Sbjct: 360 IERVTKSSME 369


>gi|158333359|ref|YP_001514531.1| DEAD/DEAH box RNA helicase [Acaryochloris marina MBIC11017]
 gi|158303600|gb|ABW25217.1| DEAD/DEAH box RNA helicase [Acaryochloris marina MBIC11017]
          Length = 574

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 142/361 (39%), Positives = 217/361 (60%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL ++P ++ AV + GY  P+PIQ ++IP +L   D+ G AQTGTGKTA+F LP+L+ 
Sbjct: 9   FADLAIAPPLLQAVEEVGYESPSPIQAQSIPPLLAGRDLLGQAQTGTGKTAAFALPLLSQ 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+  +A    P+ L+L PTRELA QVA+  + Y ++     +A L GG     Q ++L R
Sbjct: 69  LDLSQAH---PQILVLAPTRELAIQVAEAMQTYARHLPGFHIATLYGGQNISTQLRQLRR 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L + N+  +V+DEAD ML MGFI  ++ I    P  RQ  
Sbjct: 126 GVHVVVGTPGRLIDHLLRGTLKLENLSTVVLDEADEMLRMGFIEDVEKILDETPKGRQVA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +++V++  L +P  I++ + ++T  T+   +         K   L ++L+ 
Sbjct: 186 LFSATMPSAIRRVAQRHLNDPVEIKIKSKTATVSTVTQRYWQVRG--LSKLDALTRILEV 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D  +  ++F   K     L   LE +G+S   + G+I Q  R K +   K G + ++VA
Sbjct: 244 ED-FEAMLVFVRTKVMAAELAEKLEARGYSSAVLSGDISQPLREKTIERIKAGRLDIIVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E Y+HRIGRTGRAGR G A   V+  + + + +IE
Sbjct: 303 TDVAARGLDVERISHVINYDIPYDTETYVHRIGRTGRAGRQGDAILFVSSREKRMLRSIE 362

Query: 362 K 362
           +
Sbjct: 363 Q 363


>gi|194365003|ref|YP_002027613.1| DEAD/DEAH box helicase domain-containing protein [Stenotrophomonas
           maltophilia R551-3]
 gi|194347807|gb|ACF50930.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 646

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 143/375 (38%), Positives = 224/375 (59%), Gaps = 11/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LGLS  V+ AV   GY  P+PIQ  TIP +L+  DV G AQTGTGKTA+F LP+L
Sbjct: 9   LQFAQLGLSESVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKL 119
           + ++  + +   P+ L+L PTRELA QVA+ F+ Y  K     V  + GG P+  Q   L
Sbjct: 69  SNIDLQQIK---PQALVLAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSAL 125

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG  +++ TPGR++DH +R  L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ
Sbjct: 126 RRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPAKRQ 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  +++++++ +LQ+P  + +   ++T+  I   +      +  K   L ++L
Sbjct: 186 VALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMH--KLDALTRIL 243

Query: 240 QSQ--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + +  D M   IIF   K     L   L+ +G +  AI+G++ Q  R + ++  KEG + 
Sbjct: 244 EVEPFDAM---IIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLD 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A       +   +
Sbjct: 301 ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGML 360

Query: 358 DAIEKLIEKKVDWLN 372
             IE+   + ++ + 
Sbjct: 361 RQIERATRQPIEEMQ 375


>gi|255067653|ref|ZP_05319508.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC
           29256]
 gi|255048127|gb|EET43591.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC
           29256]
          Length = 457

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 220/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64

Query: 63  LEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPTDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    +NP+ IEV    +  +  E        ++  +  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKNPEIIEVERVDNQGKIEEQLLYCDDMRHKNR--LLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 361 IEKYIARKL 369


>gi|224373572|ref|YP_002607944.1| ATP-dependent RNA helicase DeaD [Nautilia profundicola AmH]
 gi|223588451|gb|ACM92187.1| ATP-dependent RNA helicase DeaD [Nautilia profundicola AmH]
          Length = 467

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 146/363 (40%), Positives = 226/363 (62%), Gaps = 11/363 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L  +++  + + G+ KP+PIQ K IP+VLQ  D+   AQTGTGKTA+F LP+L
Sbjct: 1   MTFNDFNLKKEILKRLEEIGFEKPSPIQEKAIPVVLQGKDIVAQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +LEKG+      + LI+ PTRELA QV++   ++GK+  +  A + GG  +  Q   + 
Sbjct: 61  NMLEKGQ------KALIITPTRELAIQVSEEIFRFGKHLGIHTATVYGGSSYSRQINHI- 113

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           + ++V++ TPGR++D  + GK+ +   E +V+DEAD MLDMGF+  I+ I   VP  RQT
Sbjct: 114 KNSEVIVATPGRLIDLLSSGKIDIAP-EYVVLDEADEMLDMGFLDDIKEIFKYVPSNRQT 172

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +  +++  L++P+ I++     T E I+  F     ++ +  AL++ +  
Sbjct: 173 LLFSATMPKPILSLAKTILKDPEFIQITKKEVTNENIKEYFYVI-DEHERNDALIRLIDY 231

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      I+FC  KK+V  +   L   GF    +HG++DQR R +++  FK   I+++V
Sbjct: 232 KQPN--KAIVFCRTKKDVDTVADFLSGVGFDAKGLHGDMDQRKREEVIKGFKGNRIEILV 289

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HVFN+ +P   E+Y+HRIGRTGRAG+ G A +LV   + + +  I
Sbjct: 290 ATDVAARGLDVNDVTHVFNYHLPLDPESYVHRIGRTGRAGKEGMAISLVTPHEFRALSKI 349

Query: 361 EKL 363
           +K+
Sbjct: 350 QKI 352


>gi|332703129|ref|ZP_08423217.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553278|gb|EGJ50322.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 532

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 224/371 (60%), Gaps = 11/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L LS +++ A+ D G+ + +PIQ   IPLV+   DV G AQTGTGKTA+F +P  
Sbjct: 4   LRFESLTLSKEMLKAIEDMGFEEASPIQALAIPLVMAGRDVVGQAQTGTGKTAAFGIP-- 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
            ILE    R    + L+L PTRELA QVA+      K   NL V  + GG P + Q K L
Sbjct: 62  -ILEAVDPRSHDLQALVLCPTRELAIQVAEELNTLAKYKLNLRVLPVYGGQPIDRQFKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  ++I TPGR++DH  RG L +  + ++V+DEAD MLDMGF   I+ I   VP  RQ
Sbjct: 121 RQGVQIVIGTPGRVMDHMERGTLKLGKVRMVVLDEADEMLDMGFREDIERILDDVPEERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQ 237
           T+ FSATM  E+ +++E +L  P+ ++V+    T   +E  +  V  + +    C ++  
Sbjct: 181 TIFFSATMRPEIMRLAEKYLDKPEFVKVSHKVLTVPNVEQIYYEVPRFGRLEAMCRIIDF 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                   K  ++F N KK V  L   L+ +G+    +HG+++Q  R ++++ F+ G+I+
Sbjct: 241 Y-----NPKLTVVFANTKKGVDELVEHLQARGYMADGLHGDMNQAQRDRVMAKFRAGSIE 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARG+D+ D+  VFN+D+P+  E Y+HRIGRTGRAGR G+AFT  + ++   +
Sbjct: 296 ILIATDVAARGIDVEDIEAVFNYDIPSDVEYYVHRIGRTGRAGRSGRAFTFASGKEFYKL 355

Query: 358 DAIEKLIEKKV 368
             I++  + K+
Sbjct: 356 RDIQRFTKAKI 366


>gi|260777273|ref|ZP_05886167.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606939|gb|EEX33213.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450]
          Length = 641

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 224/370 (60%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+   G+V PTPIQ   IP +++  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLMEGTDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             LE  +   R P+ ++L PTRELA QVA   +  G+N + L V  + GG     Q + L
Sbjct: 66  NKLELSQ---RKPQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D  NR +L ++ +   V+DEAD ML+MGF+  +  I    P + Q
Sbjct: 123 KNGAHIVVGTPGRVQDLINRERLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   L+ + E FL++P  I+V   + T + +E  F        +K   + +LL
Sbjct: 183 RVLFSATMPPMLKNIVERFLRDPITIDVAGKNHTVDKVEQQFWVVKG--VEKDEAMSRLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVD 369
           IE++ +  ++
Sbjct: 360 IERVTKSSME 369


>gi|46581710|ref|YP_012518.1| DEAD-box ATP dependent DNA helicase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46451133|gb|AAS97778.1| ATP-dependent RNA helicase, DEAD/DEAH family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235346|gb|ADP88200.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1]
          Length = 532

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 148/370 (40%), Positives = 221/370 (59%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L  +++ A+ + G+ +P+PIQ   IP +L+  DV G AQTGTGKTA+F LP+L  
Sbjct: 7   FKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLPLLQR 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++   A  R  + L+L PTRELA QVA+      K+   + +  + GG P E Q   L R
Sbjct: 67  ID---AADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASALRR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRILDH NRG L +  + + V+DEAD MLDMGF   I+ I S +P   Q+ 
Sbjct: 124 GAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWVQSA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
            FSATM D + +++  FL+ P+ + V     T    E  +  V  + +    C +    +
Sbjct: 184 FFSATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCRIFDAYI 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  I+F   K+ V  L  +L+++G    A+HG+++Q  R +++S F+ G I ++
Sbjct: 244 P-----RKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV  V NFD+PN  E Y+HRIGRTGRAGR G+AF+  A  D+  +  
Sbjct: 299 VATDVAARGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGRAFSFAAGRDVYKLRD 358

Query: 360 IEKLIEKKVD 369
           I+++   ++D
Sbjct: 359 IQRVTGSRID 368


>gi|94265120|ref|ZP_01288885.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93454407|gb|EAT04705.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 369

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 142/372 (38%), Positives = 215/372 (57%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA       +   +   GY  PTPIQ + IP + +  D+ G+AQTGTGKTA+FVLP+L
Sbjct: 1   MSFAQFDFDATLTANIAACGYQAPTPIQTQAIPEIRRGRDIMGLAQTGTGKTAAFVLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G R RVR    +I+ PTRELA Q+  N  + G+   +    + GG+    Q K  
Sbjct: 61  QKLSAGPRGRVR---AVIVAPTRELAEQIHVNIGELGRQTGIRSVAVYGGVSKFGQLKAF 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++++  PGR+LDH +   + +  +E+LV+DEAD M DMGF+P I+ +   +P  RQ
Sbjct: 118 KAGVEIIVACPGRLLDHLDSRDVNLGAVEMLVLDEADMMFDMGFMPAIKKLLKYLPAKRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  E++ ++++ L++P R+++N    TA      +     +   K ALL+Q++
Sbjct: 178 NLLFSATMPAEIRHLADSILKDPARVQINHTQPTALVAHKLY---RVEKQGKGALLKQVM 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q +    + ++F   K     L  +LEK G    A+ GN+ Q  R   +  FK+G   +M
Sbjct: 235 Q-ESAFSSALVFTRTKHAAKKLALNLEKAGHRAVALQGNMSQNKRKAAMEGFKQGRFNIM 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HV N+D+P   E Y HRIGRTGRA R+G+A+T    ED   +  
Sbjct: 294 VATDIAARGIDVAGISHVINYDMPATVEAYTHRIGRTGRAERNGEAYTFATAEDKVIVRQ 353

Query: 360 IEKLIEKKVDWL 371
           IE+ I  ++  L
Sbjct: 354 IERAIGSQMITL 365


>gi|323493912|ref|ZP_08099029.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323311853|gb|EGA65000.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 419

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 151/387 (39%), Positives = 229/387 (59%), Gaps = 9/387 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   ++  +   G+ +PT +Q + IP VL+  DV   AQTGTGKTA+F LP+L  
Sbjct: 5   FAALGLGSTLLSTLESLGFKQPTEVQTQAIPHVLEGKDVLAGAQTGTGKTAAFGLPILQK 64

Query: 63  LEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L     +  +     R L+L PTRELA QV DN  +Y     + V  + GG     Q + 
Sbjct: 65  LIDSDTKRDIQSNDVRALVLVPTRELAQQVFDNLTQYAAQTKIKVVAVYGGTSMNVQTRN 124

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G D+LI TPGR++DH     + ++  E LV+DEADRMLDMGF+P I+ I       R
Sbjct: 125 LDQGCDILIATPGRLIDHMYCKNINLHKTEYLVLDEADRMLDMGFMPDIKRILQRCNDDR 184

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSAT    ++ ++   L+ P  ++V+  +STAET++           +K  LL  L
Sbjct: 185 QTLFFSATFDKRIKTIAYRMLEEPVEVQVSPSNSTAETVKQMVYPV--DKKRKAELLAYL 242

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S++  +  ++F   K+    L   L+  G    +I+G+  Q +R K L +FK G ++ 
Sbjct: 243 IGSRN-WQQVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGQVRA 301

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLDI  +  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++   + 
Sbjct: 302 LIATDVAARGLDIQQLEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAVSLMSRDEEYLLH 361

Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLE 383
           AIE+L++ K+  +WL G   SL   +E
Sbjct: 362 AIERLLDTKLPQEWLQGFEPSLIEEIE 388


>gi|158334865|ref|YP_001516037.1| DEAD/DEAH box helicase [Acaryochloris marina MBIC11017]
 gi|158305106|gb|ABW26723.1| DEAD/DEAH box helicase [Acaryochloris marina MBIC11017]
          Length = 471

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 144/368 (39%), Positives = 220/368 (59%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGLS   V  +   G+  PT IQ + IP +L   D+ G AQTGTGKTA+F LP  
Sbjct: 3   LTFSQLGLSQTRVDCLEALGFTTPTQIQAEAIPHLLAGRDIIGQAQTGTGKTAAFSLP-- 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ILE+    V+ P+ LIL PTRELA QV++   ++  +  L V  + GG   + Q  +L 
Sbjct: 61  -ILEQLDPTVKTPQALILTPTRELAVQVSEAVYQFKADGALRVVAIYGGQSIDRQISQLR 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +++ TPGR+LD  +RG+++++ +   V+DEAD ML+MGFIP ++ I   VP  R+T
Sbjct: 120 RGAQLIVGTPGRVLDLLSRGEIILDQLSWFVLDEADEMLNMGFIPDVRKILERVPGDRKT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM  E+ K+S+ FL +P  + V  P +    I          +++   +LQ +L+
Sbjct: 180 AFFSATMAPEIYKLSKQFLNDPVTVTVEQPKAAPTRINQVAYRIPRTWARST-VLQAVLE 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D  ++ IIF   ++    L   L+  G+S    HG++ Q  R ++L  F++  I+ +V
Sbjct: 239 LEDP-ESAIIFVRTRREAATLTQQLQTAGYSADEYHGDLSQSQRERLLDRFRQRRIRWVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL + D+ HV N++ P+  E+Y+HRIGRTGRAG  G A +LV   D   +  I
Sbjct: 298 ATDIAARGLHVDDLSHVINYEPPDSVESYVHRIGRTGRAGNEGTAISLVHALDRWKLHEI 357

Query: 361 EKLIEKKV 368
           EK I +++
Sbjct: 358 EKHIRQEI 365


>gi|260428461|ref|ZP_05782440.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
 gi|260422953|gb|EEX16204.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
          Length = 430

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 144/376 (38%), Positives = 226/376 (60%), Gaps = 5/376 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            DF  LGL+P +  A+   G+ +PTPIQ + IPL L+ HDV G+AQTGTGKT +F LP++
Sbjct: 2   FDFDMLGLAPTLSDALKRNGFSEPTPIQNQAIPLALEGHDVLGLAQTGTGKTLAFGLPLI 61

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L  + G+   +  + L+L PTREL  Q+A++  +  +   L V  ++GG     Q   
Sbjct: 62  DALLAQPGKPLPKTVKALVLAPTRELVNQIAESLRQLTEGTKLRVGTVVGGQSINRQINF 121

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR++D  +R  + ++    LV+DEAD+MLD+GFI  ++ I   +   R
Sbjct: 122 LSRGTDILVATPGRLIDLMDRKSVDLSQTRQLVLDEADQMLDLGFIHALRKIAPKLGTPR 181

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATM  +++++S  +L NP+R++V+ P   A+ I    V    +  K   L + L
Sbjct: 182 QTMLFSATMPKQMEELSAAYLTNPRRVQVSPPGKAADKITQS-VHFLGKDDKPRKLREVL 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            Q  D +   ++F   K     L   L   GF+  +IHGN  Q  R + +  F++G I +
Sbjct: 241 RQDLDALT--LVFSRTKHGAERLMKGLVADGFNAASIHGNKSQGQRDRAIKAFRDGDINV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DIP V +V N+D+P   +NY+HRIGRT RAGR G+A    A ++   + 
Sbjct: 299 LVATDVAARGIDIPGVAYVVNYDLPEVPDNYVHRIGRTARAGREGEAIAFCAPDEADLLR 358

Query: 359 AIEKLIEKKVDWLNGD 374
            I++L++ ++   +G+
Sbjct: 359 QIQRLMKIEIPVASGE 374


>gi|76584014|gb|ABA53488.1| ATP-independent RNA helicase [Burkholderia pseudomallei 1710b]
          Length = 505

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 153/393 (38%), Positives = 224/393 (56%), Gaps = 16/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 50  FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 109

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    L+L PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 110 LDARRFDVQ---ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 166

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 167 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 226

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL++PKR+++      ++  +  +  T  +      LL    + 
Sbjct: 227 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRP 286

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 287 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVA 342

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E Y+HRIGRTGRA + G A +L +  ++  +  IE
Sbjct: 343 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 402

Query: 362 KLIEKKVDW-------LNGDLSSLNPPLEKIDI 387
           + + ++V+W         GD + L PP+E + I
Sbjct: 403 QALAREVEWHPLAELKAGGD-APLLPPMETLQI 434


>gi|260168758|ref|ZP_05755569.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           F5/99]
          Length = 535

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 155/386 (40%), Positives = 228/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I    V       +K  LL  +L 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 326

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 327 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P   HV N+D P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 386 ATDIAARGIDVPGSSHVVNYDPPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470


>gi|114561793|ref|YP_749306.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333086|gb|ABI70468.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 421

 Score =  277 bits (709), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 157/425 (36%), Positives = 242/425 (56%), Gaps = 21/425 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADL L P ++  + +  Y +PTPIQ++ IP++L   DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFADLSLHPILINRLAELKYQQPTPIQLQAIPVILSGKDVMAGAQTGTGKTAAFALPLL 60

Query: 61  -TILEKGRARVRMPRT----------LILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
             +L         P T          L+L PTRELA QV  + E+Y    ++T  ++ GG
Sbjct: 61  HQLLTHQDNLAAQPDTQHINSTPITALVLVPTRELAQQVHSSIEQYAYGSSVTSVMVYGG 120

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +    Q ++L  G  +L+ TPGR+LD   +  L ++ +  LV DEADRMLDMGF   I  
Sbjct: 121 VSIGEQIRQLANGTHILVATPGRLLDLLRKRALSLSQLTHLVFDEADRMLDMGFKDEIVE 180

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQY 228
           +   +P TRQTLLFSAT+ D +   S   L++P+ IEV   ++TA +I E  F       
Sbjct: 181 VLKRLPSTRQTLLFSATLDDRMLSFSRRLLRSPQVIEVAQRNTTASSIVERVF---NVDA 237

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           ++KCA+L  L+ +Q++    +IF   K+    L   +++ G +  A H ++ Q  R ++L
Sbjct: 238 NRKCAMLCHLI-TQESWLQSLIFSRTKQGADALVKQMKQAGVAAEAFHADLSQAVREQVL 296

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           + FK G +  +VA+D+AARGLDI ++ +V N ++P + E+Y+HRIGRTGRAG+ G+A TL
Sbjct: 297 AAFKAGEVTALVATDVAARGLDINELNYVVNMELPFQVEDYVHRIGRTGRAGKAGQAITL 356

Query: 349 VAKEDIKHIDAIEKLIEKKV--DWLNG---DLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           ++ +D   +  +E  +++++   WL G   DL  + P   K   +      +   +   S
Sbjct: 357 LSIDDEPLLTKLEAFLDRRLPQQWLAGFEPDLDLIAPVTRKTTKSALKQQARKKALAASS 416

Query: 404 TGFDR 408
            G  R
Sbjct: 417 RGKKR 421


>gi|328470415|gb|EGF41326.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus 10329]
          Length = 643

 Score =  277 bits (709), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 223/370 (60%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+   G+V PTPIQ   IP +L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L+  +   R P+ ++L PTRELA QVA   +  GKN   L V  + GG     Q + L
Sbjct: 66  NKLDLDQ---RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA V++ TPGR+ D  NR +L ++ +   V+DEAD ML+MGF+  +  I    P + Q
Sbjct: 123 KNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   L+ + E FL++P  ++V   + T + ++  F        +K   + +LL
Sbjct: 183 RVLFSATMPPMLKNIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKG--VEKDEAMSRLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVD 369
           IE++ +  ++
Sbjct: 360 IERVTKSSME 369


>gi|325102936|ref|YP_004272590.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324971784|gb|ADY50768.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 408

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 140/373 (37%), Positives = 231/373 (61%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    +S  +  ++ +AG+ KPT IQ K+IP +L   D+  IAQTGTGKTA+F +P++
Sbjct: 1   MKFNKYNISSGIKRSLEEAGFKKPTDIQFKSIPQILSGQDILAIAQTGTGKTAAFAIPLI 60

Query: 61  TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           ++LE+ +  +  P  + +++ PTRELA Q+   F   GK  ++    +IGG+  E Q KK
Sbjct: 61  SMLERSKPHLDKPTIKAVVMVPTRELAIQIEQVFLNLGKYTSIIPLAVIGGVEIEPQLKK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L + ADVLI TPGRI+D   +G L +  I+ LV+DEADRML+ GF   I+ + +L+P  R
Sbjct: 121 LNK-ADVLIATPGRIMDLVFKGHLYLKQIDFLVLDEADRMLEQGFYNDIKKLITLLPKRR 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+ FSAT+ D ++ ++   +  P RI+++     ++ ++H     Y     K   L++L
Sbjct: 180 QTMFFSATINDTIKDLAYALVNKPVRIQLSPKDPVSKNVDHA--VAYVGMDDKRFFLERL 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ ++  K  I+F   K     +  ++E+       IHG+ DQ++R ++L NF++G  Q+
Sbjct: 238 IK-ENQGKKIIVFVRTKIRAERVAKAMERVNIHTETIHGDKDQKNRFQVLDNFRDGKNQI 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D++ARGLD+  V  V N+D+P   ENY+HRIGRTGR    G+A +  ++E+  ++D
Sbjct: 297 LIATDISARGLDVKGVDFVVNYDLPEVPENYVHRIGRTGRGTSRGRAVSFCSEEEKAYLD 356

Query: 359 AIEKLIEKKVDWL 371
           AI++ I K +D +
Sbjct: 357 AIQEYIGKPIDVM 369


>gi|145594638|ref|YP_001158935.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           tropica CNB-440]
 gi|145303975|gb|ABP54557.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440]
          Length = 579

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 146/367 (39%), Positives = 213/367 (58%), Gaps = 3/367 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL  +++ A+   GY +PTPIQ + IP +L   D+ G A TGTGKTA+F LPML  
Sbjct: 23  FVDLGLRDELLAALAALGYEEPTPIQREAIPPLLAGRDLLGQAATGTGKTAAFALPMLQR 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +   R+    P  L+L PTRELA QV++ F +YGK     V  + GG P   Q + L+ G
Sbjct: 83  MPANRSTTN-PVALVLVPTRELAVQVSEAFHRYGKELGARVLPIYGGQPIGRQLRALDAG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR LDH  RG L + ++  +V+DEAD MLDMGF   I+ I    P  RQT+L
Sbjct: 142 VDVVVATPGRALDHIARGTLRLGDVGTVVLDEADEMLDMGFAEDIEAILEHAPEQRQTVL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQS 241
           FSATM   +  ++   L +P RI +      A        + Y    + K A L ++L  
Sbjct: 202 FSATMPARIDGMARAHLTDPIRILIAREKPVAGEAPRVRQSAYLVSRAHKPAALGRVLDV 261

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + +    I+FC  ++ V  L  ++  +G+   A+HG + Q  R +++   + GT  L+VA
Sbjct: 262 E-SPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVA 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+DVP+  E+Y+HRIGR GRAGR G A TL      + +  IE
Sbjct: 321 TDVAARGLDVEQLSHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPRAHRMLKTIE 380

Query: 362 KLIEKKV 368
           ++  +++
Sbjct: 381 RVTGQRI 387


>gi|88704236|ref|ZP_01101950.1| ATP-dependent RNA helicase DEAD/DEAH box [Congregibacter litoralis
           KT71]
 gi|88701287|gb|EAQ98392.1| ATP-dependent RNA helicase DEAD/DEAH box [Congregibacter litoralis
           KT71]
          Length = 604

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 146/372 (39%), Positives = 226/372 (60%), Gaps = 9/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L   ++ A+ D GY  P+ IQ  TIP +L+  D+ G AQTGTGKTA+F LP+L  
Sbjct: 10  FDELQLPVFLMKALSDVGYETPSAIQTMTIPPLLEGKDLVGQAQTGTGKTAAFALPILAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+   A++  P+ L+L PTRELA QVA+ F+KY ++     V  + GG  +  Q ++L+R
Sbjct: 70  LD---AKLAKPQALVLAPTRELAIQVAEAFQKYARHSKGFKVLPIYGGSDYRTQLRQLQR 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L ++ ++ LV+DEAD ML MGFI  ++ I    P  RQ  
Sbjct: 127 GVHVIVGTPGRVMDHMRRGSLDLSALKTLVLDEADEMLRMGFIDDVEWILEQTPPERQIA 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++++++  L  P+ I +   + T  +I          +  K   L ++L++
Sbjct: 187 LFSATMPDAIRRIAQQHLSKPEEITIKLKTVTNASIRQRVWMMGGMH--KLDALTRILET 244

Query: 242 QDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +DT  +GII F   +     L   L  +G+   A++G+I Q  R K + N K+G + ++V
Sbjct: 245 EDT--DGIIIFVRTRIATQELADKLAARGYGTAALNGDIPQNLREKTVENLKKGALDILV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+PN  E Y+HRIGRTGRAGR G+A    A  + + +  I
Sbjct: 303 ATDVAARGLDVERISHVINYDIPNDPEAYVHRIGRTGRAGRTGEAILFAANRERRLLRTI 362

Query: 361 EKLIEKKVDWLN 372
           E++  +K++ + 
Sbjct: 363 ERVTGQKIESME 374


>gi|152993022|ref|YP_001358743.1| DEAD-box ATP dependent DNA helicase [Sulfurovum sp. NBC37-1]
 gi|151424883|dbj|BAF72386.1| ATP-dependent RNA helicase, DEAD-box family [Sulfurovum sp.
           NBC37-1]
          Length = 460

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 155/404 (38%), Positives = 238/404 (58%), Gaps = 17/404 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F        +   V  AG+ +P+PIQ   IP++    D+ G A TGTGKTA+F LPM+
Sbjct: 1   MNFNQFNFHRDLAKGVKIAGFREPSPIQKMAIPIIEGGKDLVGQAHTGTGKTAAFGLPMM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L KG     + R L++ PTRELA QVAD     G+   +    + GG+ +  Q   + 
Sbjct: 61  DKLAKGE----IERALVITPTRELATQVADELYHLGRFAGIRTLTVYGGVGYGRQIALIH 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+ D + +GK+ + N EI+V+DEAD MLDMGF+  I+ I   +P  RQT
Sbjct: 117 KGVQIVVATPGRLKDLYRKGKIDVLNPEIVVLDEADEMLDMGFLDEIKEIFEYIPQNRQT 176

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQL 238
           LLFSATM + +++++ + L  P+ I V     T   I  +  +V    Q  +      +L
Sbjct: 177 LLFSATMPEPIKELANHILYQPEFISVVGDEETTNNIIEQRYYVINENQRDEAIV---KL 233

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+++DT K  IIFC  K+ V  L   L+ QGF+   +HG+++Q+ R  ++  ++ G  ++
Sbjct: 234 LETEDTNKC-IIFCRMKREVDRLTEYLQAQGFNASGLHGDLEQQDREVVIKAYRRGETKI 292

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLD+ DV HVFN+ +P   ++Y+HRIGRTGRAG+ G+A TLV  E+ + + 
Sbjct: 293 MVATDVAARGLDVKDVTHVFNYHIPFDPQSYVHRIGRTGRAGKSGQAITLVTTEEFRELQ 352

Query: 359 AIEKLI--EKKVDWLNG----DLSSLNPPLEKI-DIAQHNHARK 395
            I+K +  +  +  L G    D SSL    E+I D+  H  A++
Sbjct: 353 RIQKEVGADMHLATLQGGEGLDESSLEYLAEQIRDMPVHKEAKR 396


>gi|294084931|ref|YP_003551691.1| putative DEAD box ATP-dependent RNA helicase protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664506|gb|ADE39607.1| putative DEAD box ATP-dependent RNA helicase protein [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 651

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 149/375 (39%), Positives = 229/375 (61%), Gaps = 7/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  L   ++  +   G V PTPIQ  +IPL+L  HD+ G+AQTGTGKTA+F+LP++T 
Sbjct: 19  FADFDLPENMLGTLAREGLVVPTPIQQMSIPLLLLGHDLIGLAQTGTGKTAAFLLPLMTQ 78

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L    + VR    P+ LIL PTRELA Q++ N  +   + N+    + GG  +E Q + L
Sbjct: 79  LSYSPS-VRSGQPPKALILAPTRELANQISANLSRLSADMNIRHICVFGGARYEGQIRGL 137

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG D+++ TPGR++D   RG    + I   ++DEAD MLD+GF P +++I++ +P  RQ
Sbjct: 138 KRGVDIVVATPGRLMDLMERGSFDPSGITHWILDEADHMLDLGFYPAMKHISASLPADRQ 197

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  E++K+   FL +P+R++      TA+ I    V   A+  K+  L   +L
Sbjct: 198 TMLFSATMPPEIEKLGNEFLTDPERVKAPQSGITADKITQ-RVTLMAEADKRDRLC-DVL 255

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +DT +  +IF   K+    L   +E +GF+V  +HG++ Q  R K+L NF++G +Q +
Sbjct: 256 NHEDTGQC-LIFVRTKRRADALSKFMEDRGFAVDTLHGDMRQGLRQKVLRNFRDGRLQGL 314

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI  + HV NFD+ +  E Y+HRIGRTGRAG  G A +  +  +   + A
Sbjct: 315 IATDVAARGIDIAGLSHVVNFDLTDTPEAYVHRIGRTGRAGLGGLALSFCSPSEEPRLAA 374

Query: 360 IEKLIEKKVDWLNGD 374
           I   +  +V+  + D
Sbjct: 375 IIAAVGPRVELFDMD 389


>gi|193212281|ref|YP_001998234.1| DEAD/DEAH box helicase domain-containing protein [Chlorobaculum
           parvum NCIB 8327]
 gi|193085758|gb|ACF11034.1| DEAD/DEAH box helicase domain protein [Chlorobaculum parvum NCIB
           8327]
          Length = 647

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 144/370 (38%), Positives = 224/370 (60%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F  L L+  ++ A+   GY  PTPIQ  TIPL+L+  DV G AQTGTGKTA+F LP L
Sbjct: 17  LNFRSLQLAEPLLQALEAVGYETPTPIQANTIPLLLEGRDVLGQAQTGTGKTAAFALPTL 76

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           + ++     +  P+ L+L PTRELA QVA+ F  Y +   +  V  + GG  +  Q + L
Sbjct: 77  SNID---LSLSDPQVLVLAPTRELAIQVAEAFHTYAEFMPDFHVLPIYGGQDYGVQIRML 133

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGR++DH  +G L ++ ++ LV+DEAD ML MGFI  ++ I    P +RQ
Sbjct: 134 KRGVHVVVGTPGRVMDHMRKGTLNLDGLKCLVLDEADEMLRMGFIDDVEWILDQTPESRQ 193

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   + +++  +L+ P  I +   ++T ETI   +      +  K   L ++L
Sbjct: 194 VALFSATMPQPILRIARKYLKAPAEITIQAKTTTVETIRQRYWMVGGHH--KLDALTRIL 251

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +      IIF   K   VNL   L+ +G+   A++G++ Q +R + +   K+GT+ ++
Sbjct: 252 EVE-PFDGIIIFVRTKTETVNLAEKLQARGYLAAALNGDMVQSARERTIEQLKDGTLNIV 310

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   V+  +   + A
Sbjct: 311 IATDVAARGLDVDRISHVINYDIPTDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLFA 370

Query: 360 IEKLIEKKVD 369
           IE+   K++D
Sbjct: 371 IERATRKRID 380


>gi|158321361|ref|YP_001513868.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           oremlandii OhILAs]
 gi|158141560|gb|ABW19872.1| DEAD/DEAH box helicase domain protein [Alkaliphilus oremlandii
           OhILAs]
          Length = 461

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 151/399 (37%), Positives = 236/399 (59%), Gaps = 12/399 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+  ++V  +   G V+PTPIQ ++IP+ LQ  D+   AQTGTGKT +F+LP+L 
Sbjct: 4   EFLNLGIIEEIVEPLRAEGIVEPTPIQRESIPVALQGKDIIAQAQTGTGKTFAFMLPILQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + K +  V+    LIL PTRELA Q+    +K  K  ++ V  + GG   E Q  KL+ 
Sbjct: 64  KINKNQKDVQ---ALILAPTRELALQITTEAKKIAKGLDVNVLAVYGGQDVEKQIHKLKG 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+I TPGR+LDH  RG + +  +  LV+DEAD+ML MGF+  ++ I    P  RQ +
Sbjct: 121 GMHVVIATPGRLLDHLRRGTMHLKAVNQLVLDEADQMLTMGFLEEVEYIIKKTPQNRQLM 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT+   ++ ++  +++NP  I +++   T + I+   V T  ++ K+ AL+  + Q 
Sbjct: 181 LYSATIPKGIRALTNRYMKNPVEIRIHSNKVTLDEIKQLVVETTDRH-KQEALMHMIKQE 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   I+FC  K+ V  L  +L ++GFS   +HG++ Q  R K++  F+   +Q++VA
Sbjct: 240 NPFL--AIVFCRTKRRVKTLSDALIEKGFSCDELHGDMTQAKREKVMKEFRNAKLQILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+  + HVFN+D+P   E YIHRIGRTGRAG  G A T  A +D   +  IE
Sbjct: 298 TDVAARGIDVEGITHVFNYDIPQDVEGYIHRIGRTGRAGDKGMAITFAAPKDRDSLAMIE 357

Query: 362 KLIEKKVDWLN----GDLSSLNPPLEKIDIAQHNHARKN 396
           + I +K+  +     G + S+    E+   A+    RKN
Sbjct: 358 RGINQKIVKITFKPEGRVESIEETFER--EAKKREERKN 394


>gi|218768385|ref|YP_002342897.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
 gi|121052393|emb|CAM08725.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
 gi|319410631|emb|CBY91000.1| putative ATP-dependent RNA helicase [Neisseria meningitidis WUE
           2594]
          Length = 462

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 149/369 (40%), Positives = 219/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64

Query: 63  LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPEDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    ++P+ IEV       +  E        ++  K  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  +++
Sbjct: 242 RDAD-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 361 IEKYINRKL 369


>gi|254521627|ref|ZP_05133682.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14]
 gi|219719218|gb|EED37743.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14]
          Length = 648

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 144/375 (38%), Positives = 224/375 (59%), Gaps = 11/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LGLS  V+ AV   GY  P+PIQ  TIP +L+  DV G AQTGTGKTA+F LP+L
Sbjct: 9   LQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKL 119
           + ++  + +   P+ LIL PTRELA QVA+ F+ Y  K     V  + GG P+  Q   L
Sbjct: 69  SNIDLQQIK---PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSAL 125

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG  +++ TPGR++DH +R  L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ
Sbjct: 126 RRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQ 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  +++++++ +LQ+P  + +   ++T+  I   +      +  K   L ++L
Sbjct: 186 VALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMH--KLDALTRIL 243

Query: 240 QSQ--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + +  D M   IIF   K     L   L+ +G +  AI+G++ Q  R + ++  KEG + 
Sbjct: 244 EVEPFDAM---IIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLD 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A       +   +
Sbjct: 301 ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGML 360

Query: 358 DAIEKLIEKKVDWLN 372
             IE+   + ++ + 
Sbjct: 361 RQIERATRQPIEEMQ 375


>gi|37912838|gb|AAR05178.1| putative ATP-dependent RNA helicase [uncultured marine
           proteobacterium ANT8C10]
          Length = 635

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 227/370 (61%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS  ++ ++ D  + KP+ IQ + IP++L   ++   AQTGTGKT SFVLPML
Sbjct: 1   MSFKELGLSEPILKSLEDLEHTKPSEIQQQAIPVILAGKNIMAAAQTGTGKTGSFVLPML 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L E+ +   +    L+L PTRELAAQV ++   YGK  N+T   + GG     Q  KL
Sbjct: 61  EMLHEQAKPYSKNVHALVLTPTRELAAQVRESVHSYGKLTNITSTAVFGGAKIFPQKAKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G D+L+ TPGR+LD  N+  + ++ ++ILV+DEAD MLDMGFI  I+ I ++ P TRQ
Sbjct: 121 KKGVDILVATPGRLLDLVNQKAVKLDQVQILVLDEADHMLDMGFIHDIKKIIAMTPPTRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++K++++       I   +P++T   I+   +  +   +KK  LL  ++
Sbjct: 181 NLLFSATFSPEIKKLAQSLGDGLVEISAQSPNTTVSKIKQ--IVYHVDKNKKSDLLAHMI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++     ++F   K     +   L   G     IHG+  Q +R K L  FK   ++++
Sbjct: 239 E-EEQWDQALVFSKTKHGCEKIADYLNAAGIETGTIHGDKTQGARTKALREFKGKFVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI ++  V NFD+P    +YIHRIGRTGRAG+ G A +L++ ++ K +  
Sbjct: 298 VATDVAARGIDISNLPFVVNFDMPTYPNDYIHRIGRTGRAGQEGTAISLMSSDEHKFLRG 357

Query: 360 IEKLIEKKVD 369
           IE L++ K+D
Sbjct: 358 IEGLLKIKID 367


>gi|326795184|ref|YP_004313004.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326545948|gb|ADZ91168.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 619

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 150/374 (40%), Positives = 225/374 (60%), Gaps = 15/374 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL+  ++ AV D GY +P+ IQ ++IP +L+ HD+ G AQTGTGKTA+F LP+L+ 
Sbjct: 10  FDSLGLAAPILKAVADLGYEQPSAIQAQSIPYLLEGHDLLGQAQTGTGKTAAFALPLLSR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++      ++   L+L PTRELA QV++ F+ Y +N  +  V  + GG+ ++ Q ++L R
Sbjct: 70  IDVTNKSTQL---LVLAPTRELAIQVSEAFQSYARNIPDFHVLPIYGGMSYDTQLRQLRR 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  R  L ++ ++ LV+DEAD ML MGFI  ++ I    P   QT 
Sbjct: 127 GVQVVVGTPGRVMDHIRRKTLKLDGLQALVLDEADEMLRMGFIDDVEWILEHTPDGHQTA 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS--KKCALLQQLL 239
           LFSATM   ++KV+   L NPK +++ T +STA TI       Y Q S   K   L ++L
Sbjct: 187 LFSATMPPVIRKVANKHLNNPKEVKILTKTSTATTISQ----KYWQVSGIHKLDALTRIL 242

Query: 240 Q--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +    D M   IIF   K   V L   L  +G +  A++G+I Q  R + +   K+G I 
Sbjct: 243 EMNEHDGM---IIFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVDRIKKGQID 299

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARGLD+  V HV N+D+P   E+Y+HRIGRTGRAGR G A   V   + + +
Sbjct: 300 ILVATDVVARGLDVDRVSHVVNYDIPYDTESYVHRIGRTGRAGRSGTAILFVGHRERRML 359

Query: 358 DAIEKLIEKKVDWL 371
             IE+   + ++ +
Sbjct: 360 QQIERATRQAIERM 373


>gi|190573462|ref|YP_001971307.1| putative DEAD-box helicase [Stenotrophomonas maltophilia K279a]
 gi|190011384|emb|CAQ44999.1| putative DEAD-box helicase [Stenotrophomonas maltophilia K279a]
          Length = 654

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 144/375 (38%), Positives = 224/375 (59%), Gaps = 11/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LGLS  V+ AV   GY  P+PIQ  TIP +L+  DV G AQTGTGKTA+F LP+L
Sbjct: 9   LQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKL 119
           + ++  + +   P+ LIL PTRELA QVA+ F+ Y  K     V  + GG P+  Q   L
Sbjct: 69  SNIDLQQIK---PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSAL 125

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG  +++ TPGR++DH +R  L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ
Sbjct: 126 RRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQ 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  +++++++ +LQ+P  + +   ++T+  I   +      +  K   L ++L
Sbjct: 186 VALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMH--KLDALTRIL 243

Query: 240 QSQ--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + +  D M   IIF   K     L   L+ +G +  AI+G++ Q  R + ++  KEG + 
Sbjct: 244 EVEPFDAM---IIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLD 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A       +   +
Sbjct: 301 ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGML 360

Query: 358 DAIEKLIEKKVDWLN 372
             IE+   + ++ + 
Sbjct: 361 RQIERATRQPIEEMQ 375


>gi|269962576|ref|ZP_06176923.1| ATP-dependent RNA helicase DeaD [Vibrio harveyi 1DA3]
 gi|269832689|gb|EEZ86801.1| ATP-dependent RNA helicase DeaD [Vibrio harveyi 1DA3]
          Length = 644

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 222/370 (60%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+   G+V PTPIQ   IP +L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L+  +   R P+ ++L PTRELA QVA   +  GKN   L V  + GG     Q + L
Sbjct: 66  NKLDLDQ---RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA V++ TPGR+ D  NR +L ++ +   V+DEAD ML+MGF+  +  I    P + Q
Sbjct: 123 KNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   L+ + E FL+ P  ++V   + T + ++  F        +K   + +LL
Sbjct: 183 RVLFSATMPPMLKNIVERFLREPVTVDVAGKNHTVDKVQQQFWVVKG--VEKDEAMSRLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVD 369
           IE++ +  ++
Sbjct: 360 IERVTKSSME 369


>gi|251796178|ref|YP_003010909.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
 gi|247543804|gb|ACT00823.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
          Length = 578

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 143/384 (37%), Positives = 229/384 (59%), Gaps = 10/384 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  +G+ P++   +   G   PTP+Q K IP++L   DV   AQTGTGKT +F LP+L 
Sbjct: 4   EFISMGIIPELTDVLQSNGITSPTPVQKKAIPVLLSGQDVIAQAQTGTGKTIAFTLPILQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  + +V+    LIL PTRELA Q+    +K        V    GG   +AQ +KL  
Sbjct: 64  RIDIDKEQVQ---ALILTPTRELAIQITSELKKLAAAVGAKVLAAYGGQDVDAQIRKLNN 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++DH  R  + +  +++LV+DEAD+ML MGF+P +QNI    P  RQT+
Sbjct: 121 SPHIVVATPGRLIDHMRRETINLGKLKMLVLDEADQMLHMGFLPEVQNIVDQTPRARQTM 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D++++++EN+++ P  I++ + + T + I+   + T  +  +K   L  ++++
Sbjct: 181 LFSATMPDQIKRLAENYMKTPVDIKIQSANVTLDNIKQLVIETTDRGRQKA--LISMIET 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q      +IFC  K     L   L+  GF    +HG++ Q  R +++  F++  +Q++VA
Sbjct: 239 QRPYL-AVIFCRTKVRAKKLNKDLQDLGFESDELHGDLTQAKREQVMKRFRDAKLQILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358
           +D+AARGLD+  V HVFNFDVP  +E YIHRIGRTGRAG+ G A T+ +  D   + HI+
Sbjct: 298 TDVAARGLDVEGVTHVFNFDVPTDSEIYIHRIGRTGRAGQRGTAITIASPYDRAAVAHIE 357

Query: 359 -AIEKLIEKKVDWLNGDLSSLNPP 381
            +I  ++E++    +G +     P
Sbjct: 358 RSINAILERRTIEADGTIVKNTAP 381


>gi|99080768|ref|YP_612922.1| DEAD/DEAH box helicase-like [Ruegeria sp. TM1040]
 gi|99037048|gb|ABF63660.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TM1040]
          Length = 445

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 154/368 (41%), Positives = 231/368 (62%), Gaps = 11/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +F+ + L PK +   ++A G+  PTPIQ + IP  L   DV G+AQTGTGKTA+F +P++
Sbjct: 3   EFSSMDL-PKHLHTRMEAMGFNTPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLV 61

Query: 61  T-ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +LE GR       R LIL PTRELA Q+A+      +   L   L++GG+    Q  +
Sbjct: 62  AQMLEYGRKPAAGTVRGLILAPTRELANQIAETLRGLTEGSPLKTGLVVGGVSINPQIHR 121

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD  +R  L + + + LV+DEAD+MLD+GFI  ++ I +L+P  R
Sbjct: 122 LSKGTDILVATPGRLLDILDRKALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEER 181

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCALLQ 236
           QT+LFSATM  ++ +++  +L++P RIEV  P   A  +     F+A     ++K +LL+
Sbjct: 182 QTMLFSATMPKQMNEIANAYLKSPVRIEVTPPGKPAAKVTQSVHFIAK----AEKLSLLK 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL + D  +  ++F   K  +  L   L+K GF   AIHGN  Q  R + L  FK G I
Sbjct: 238 ELLSAHDGERT-LVFGRTKHGMEKLMKVLDKAGFKAAAIHGNKSQGQRERALKAFKSGEI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLDIPDV +V+N+++PN  + Y+HRIGRT RAG+ G+A    A ++I  
Sbjct: 297 TVLVATDVAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEIGD 356

Query: 357 IDAIEKLI 364
           + AI+K +
Sbjct: 357 LKAIQKTM 364


>gi|255037844|ref|YP_003088465.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254950600|gb|ACT95300.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 445

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 150/420 (35%), Positives = 250/420 (59%), Gaps = 15/420 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L+ +++ A+ +AGY +PTPIQ + IP+ L   D+ GIAQTGTGKTA++ LP+L  
Sbjct: 8   FEQFKLNRQLLNAIEEAGYTEPTPIQEQAIPVALAGQDILGIAQTGTGKTAAYTLPLLMR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  + +   PR LIL PTRELA Q+++   +  K  ++   +L GG+  + Q + + +G
Sbjct: 68  IKYAQGQ--HPRALILAPTRELAMQISEAIAQLSKYTDIRTVVLYGGVGPKTQIEAIRKG 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR +D + + ++++ ++ ++V+DEAD+M+DMGF+P I+ +  ++P  RQ +L
Sbjct: 126 VDIIVATPGRFMDLYFQEEIVVKHLNVMVLDEADKMMDMGFMPQIRKLLEVIPRKRQNML 185

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT + +++ +S  FL+ P RIEV TP +TA  +    +     +  K  LL  LL+ +
Sbjct: 186 FSATFSGKVENLSYEFLEFPTRIEV-TPQATAAEMVTQVLYEVPNFRTKINLLSYLLEDK 244

Query: 243 DTMKNGIIFCNQKKNVVNLCHS--LEK--QGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +   ++F  + + V  L H   L +      +  IH N  Q +R+  +  F+EG +++
Sbjct: 245 EALTRVLVFT-RSREVAGLVHQNLLNRVVPEAELRVIHANKGQNTRINAMEAFREGNVRV 303

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+ ARG+DI +V HV NFDVP   E+Y+HRIGRTGRA   G A T +   D  HI 
Sbjct: 304 MVATDVVARGIDITEVSHVVNFDVPLIYEDYVHRIGRTGRANNVGNAITFMTIADEYHIR 363

Query: 359 AIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQH--NHARKNNPIPQKSTGFDRRKKNY 413
            IE +I  ++   ++ +    +  P  E+ D+ +   N  RK +P  + +  F  +K  Y
Sbjct: 364 KIEAMIRMEIPRAEFPDDVYIAETPFQERQDMLREIDNQRRKEDPTFKGA--FHEKKHGY 421


>gi|308071203|ref|YP_003872808.1| ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
 gi|305860482|gb|ADM72270.1| Probable ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
          Length = 559

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 145/363 (39%), Positives = 221/363 (60%), Gaps = 6/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA LG+    V A+ + G   PTP+Q ++IPL+++  DV   A TGTGKT +F+LP+L 
Sbjct: 13  NFAALGVEQHWVEALKEQGISSPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQ 72

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L   +   R P+ L++ PTRELA Q+ +   +      +L++  + GG   E Q +KL+
Sbjct: 73  KLNLDK---RHPQALVIAPTRELALQITEEANRLAATEPSLSLLAVYGGQDVERQLRKLK 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA ++I TPGR+LDH  RG L +  I++LV+DEAD+ML MGF+  ++ I   VP+ RQT
Sbjct: 130 GGAQLIIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEVPYRRQT 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++K++  ++  P  ++V + SS   +     V       K+ AL+  L  
Sbjct: 190 MLFSATMPAGIRKLARVYMNEPVDVKVKSASSVPVSQIRQVVVQTTDRGKQQALVDML-- 247

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D     +IFC  K+    L   L++ GF    +HG++ Q  R +++  F+E  +QL+V
Sbjct: 248 NTDRPYLAVIFCRTKRRAAKLNEELQEMGFESGELHGDLSQNKREQVMKAFREAKLQLLV 307

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P  AE+YIHRIGRTGRAG  G A TL    D+  +  I
Sbjct: 308 ATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPELRNI 367

Query: 361 EKL 363
           +++
Sbjct: 368 QRV 370


>gi|120601130|ref|YP_965530.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           vulgaris DP4]
 gi|120561359|gb|ABM27103.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4]
          Length = 532

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 148/370 (40%), Positives = 221/370 (59%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L  +++ A+ + G+ +P+PIQ   IP +L+  DV G AQTGTGKTA+F LP+L  
Sbjct: 7   FKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLPLLQR 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++   A  R  + L+L PTRELA QVA+      K+   + +  + GG P E Q   L R
Sbjct: 67  ID---AADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASALRR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRILDH NRG L +  + + V+DEAD MLDMGF   I+ I S +P   Q+ 
Sbjct: 124 GAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWVQSA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
            FSATM D + +++  FL+ P+ + V     T    E  +  V  + +    C +    +
Sbjct: 184 FFSATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCRIFDAYI 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  I+F   K+ V  L  +L+++G    A+HG+++Q  R +++S F+ G I ++
Sbjct: 244 P-----RKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV  V NFD+PN  E Y+HRIGRTGRAGR G+AF+  A  D+  +  
Sbjct: 299 VATDVAARGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGQAFSFAAGRDVYKLRD 358

Query: 360 IEKLIEKKVD 369
           I+++   ++D
Sbjct: 359 IQRVTGSRID 368


>gi|262392485|ref|YP_003284339.1| ATP-dependent RNA helicase DbpA [Vibrio sp. Ex25]
 gi|262336079|gb|ACY49874.1| ATP-dependent RNA helicase DbpA [Vibrio sp. Ex25]
          Length = 459

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 147/367 (40%), Positives = 225/367 (61%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+P ++  +    Y   TPIQ  ++P +L+  DV G  +TG+GKTA+F L +L+ 
Sbjct: 6   FDQVGLNPALLATLDSLNYTHMTPIQALSLPAILKHRDVIGQGKTGSGKTAAFGLGVLSN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA      G+  +N+ V  L GG+P   Q   LE 
Sbjct: 66  LNVKRFRVQ---SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH  +G++ ++ +  LV+DEADRMLDMGF   +  I    P  RQTL
Sbjct: 123 GAHILVGTPGRILDHLEKGRINLSELNTLVLDEADRMLDMGFQDALDAIIDAAPKQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  ++++++++  +Q P+ I+V +   T+   +H F       ++  AL   LL  
Sbjct: 183 LFSATFPEKIEQIAQRIMQTPEVIKVESTHDTSSIAQH-FYKVEGSEARDEALANLLLTH 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ ++FCN KK V ++   L ++GFSV  IHG+++QR R + L  F   ++ ++VA
Sbjct: 242 QP--ESAVVFCNTKKEVQSVADELHRKGFSVIDIHGDLEQRERDQALVQFANKSVSILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+   ++D   +  IE
Sbjct: 300 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIE 359

Query: 362 KLIEKKV 368
           + +E  V
Sbjct: 360 EYLEMDV 366


>gi|296184919|ref|ZP_06853330.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
 gi|296050701|gb|EFG90124.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
          Length = 374

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 149/368 (40%), Positives = 221/368 (60%), Gaps = 12/368 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L  KV+ A+   G+ +P+ IQ + IP++L  +D+ G AQTGTGKT +F  P+L+ 
Sbjct: 6   FSDLNLHKKVLQAIDAMGFEEPSQIQAEAIPVILSGNDMIGQAQTGTGKTLAFGAPVLSQ 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E           L+L PTRELA QV D   +  K     +  + GG P + Q K L RG
Sbjct: 66  IESSDK----ISALVLTPTRELAIQVNDELARIAKFKRTKLLPVYGGQPIDRQIKSLRRG 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGRILDH  R  L ++ +  LV+DE+D ML+MGFI  I+ I   +   RQTLL
Sbjct: 122 VDVVVGTPGRILDHIKRNTLDLSGVNFLVLDESDEMLNMGFIDDIEEIIKSLNKDRQTLL 181

Query: 183 FSATMTDELQKVSENFLQNP-KRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           FSATM  E+ K++  +++N  K I++   S T E I+  +  V    ++   C +L    
Sbjct: 182 FSATMPKEIAKLASKYMKNEVKHIKIVKNSLTVEKIKQYYYEVKHKDRFESLCRIL---- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D   + IIFC  K+ V  L  S++ +G++V  +HG++ Q  R+  L  FKEGT+  +
Sbjct: 238 -DIDEPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGTLDFL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV HV N+D+P   E+Y+HRIGRTGRA + G A++LV   +   I  
Sbjct: 297 VATDVAARGIDVDDVSHVINYDLPQDMESYVHRIGRTGRANKEGIAYSLVTPREYIMIKQ 356

Query: 360 IEKLIEKK 367
           +EK  +++
Sbjct: 357 LEKFTKRQ 364


>gi|302038923|ref|YP_003799245.1| DEAd-box RNA helicase [Candidatus Nitrospira defluvii]
 gi|300606987|emb|CBK43320.1| DEAD-box RNA helicase [Candidatus Nitrospira defluvii]
          Length = 576

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 145/370 (39%), Positives = 218/370 (58%), Gaps = 10/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   ++  +   GY +PTPIQ + IP +L+  D+ G A TGTGKTA+F LP+L  
Sbjct: 21  FAALGLEASLLTTLEALGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAAFALPLLQR 80

Query: 63  LEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  G R R   P  L+L PTRELA QV++  ++YGK   + V  L GG     Q + L R
Sbjct: 81  IAHGPRQR---PTALVLVPTRELAVQVSEAVQRYGKELRIGVLALYGGQAMGPQLQALRR 137

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G +V++ TPGR LDH  R  L + +++++V+DEAD MLDMGF   +  I    P  +QT 
Sbjct: 138 GVEVIVATPGRALDHLRRKTLKLADLQVVVLDEADEMLDMGFADDLDAILEQTPAGKQTA 197

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVN---TPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           LFSATM   +  ++   L+NP  + +      +  A  ++        Q+  K + L ++
Sbjct: 198 LFSATMPPRIASIARRHLKNPVDVTIAREPVKAGAAPRVQQTAYVVARQH--KVSALARV 255

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L    T K+ ++FC  +  V  +  +L  +G+   AIHG + Q  R +++  F+ G  +L
Sbjct: 256 LDIA-TPKSALVFCRTRLEVDEVTAALNGRGYRAEAIHGGMSQVQRDRVMQAFRSGQTEL 314

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIP V HV N+D+P+  E Y+HRIGRTGRAGR G A T++   + + + 
Sbjct: 315 LVATDVAARGLDIPSVSHVINYDLPSSLEVYVHRIGRTGRAGREGAAMTIIEPREQRLLR 374

Query: 359 AIEKLIEKKV 368
           A+E+  + K+
Sbjct: 375 AVEQHTKAKI 384


>gi|111219903|ref|YP_710697.1| cold-shock DeaD box ATP-dependent RNA helicase [Frankia alni
           ACN14a]
 gi|111147435|emb|CAJ59085.1| cold-shock DeaD box ATP-dependent RNA helicase [Frankia alni
           ACN14a]
          Length = 608

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 144/395 (36%), Positives = 226/395 (57%), Gaps = 16/395 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L L P+++ ++   GY +PTPIQ + +P ++   D+ G A TGTGKTA+F LP+L  
Sbjct: 59  FAELALRPELLRSLAALGYEEPTPIQREAVPPLVAGRDLLGQAATGTGKTAAFALPLLHR 118

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   R     P+ L+L PTRELA QV++   +YG++    V  + GG P   Q + L +G
Sbjct: 119 LTDDRTGDHGPQALVLVPTRELAVQVSEAIHRYGRDLGARVLPVYGGAPIGRQVRALVQG 178

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR LDH  RG L ++ +  +V+DEAD MLDMGF   I  I    P  RQT+L
Sbjct: 179 VDVVVATPGRALDHMGRGTLRLDGLHTVVLDEADEMLDMGFAEDIDAILEQAPQKRQTVL 238

Query: 183 FSATMTDELQKVSENFLQNPKRIEVN--TPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           FSAT+   + +++   L++P RI++    P   A  +    V+     + K A L ++L 
Sbjct: 239 FSATLPPRMDQIARRHLRDPVRIQIGRAAPEPGAAPLVRQ-VSYVVPRAYKTAALGRILD 297

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            + + ++ I+FC  ++ V  L  SL  +G+   ++HG + Q  R +++   +  T  L+V
Sbjct: 298 VE-SPRSAIVFCRTREEVDQLADSLNGRGYRAESLHGGMSQEQRERVMERLRTATADLLV 356

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD   + HV N+ VP+  ++Y+HRIGR GRAGR G A TL    + + +  I
Sbjct: 357 ATDVAARGLDFEQLTHVVNYSVPSAPDSYVHRIGRVGRAGREGVAITLAEPREHRMLKTI 416

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           E++  +++             +EK+      HAR+
Sbjct: 417 ERVTRQRI------------AVEKVPTVADLHARR 439


>gi|237510128|ref|ZP_04522843.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Burkholderia pseudomallei
           MSHR346]
 gi|235002333|gb|EEP51757.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Burkholderia pseudomallei
           MSHR346]
          Length = 465

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 153/393 (38%), Positives = 225/393 (57%), Gaps = 16/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 10  FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    L+L PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 70  LDARRFDVQ---ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL++PK++++      ++  +  +  T  +      LL    + 
Sbjct: 187 LFSATYPDGIAKLSQQFLRHPKKVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRP 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I FCN K+   +L   L  QGF V A+HG ++QR R ++L  F   +  ++VA
Sbjct: 247 VST----IAFCNTKQQCRDLLDVLHAQGFHVLALHGELEQRERDQVLIRFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E Y+HRIGRTGRA + G A +L +  ++  +  IE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 362

Query: 362 KLIEKKVDW-------LNGDLSSLNPPLEKIDI 387
           + + ++V+W         GD + L PP+E + I
Sbjct: 363 QALAREVEWHPLAELKAGGD-APLLPPMETLQI 394


>gi|254176272|ref|ZP_04882930.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei ATCC 10399]
 gi|160697314|gb|EDP87284.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei ATCC 10399]
          Length = 476

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 153/393 (38%), Positives = 224/393 (56%), Gaps = 16/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 21  FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 80

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    L+L PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 81  LDARRFDVQ---ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 137

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 138 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 197

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL++PKR+++      ++  +  +  T  +      LL    + 
Sbjct: 198 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRP 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 258 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E Y+HRIGRTGRA + G A +L +  ++  +  IE
Sbjct: 314 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 373

Query: 362 KLIEKKVDW-------LNGDLSSLNPPLEKIDI 387
           + + ++V+W         GD + L PP+E + I
Sbjct: 374 QALAREVEWHPLAELKAGGD-APLLPPMETLQI 405


>gi|319408783|emb|CBI82440.1| ATP-dependent RNA helicase [Bartonella schoenbuchensis R1]
          Length = 454

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 154/369 (41%), Positives = 225/369 (60%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  LG+   +   +  AG  KP PIQ + IP++L++ D+ GIAQTG+GKT +F LP+L+ 
Sbjct: 8   FIKLGIPTLLTENLFIAGINKPKPIQKQAIPVMLKKRDILGIAQTGSGKTLAFGLPVLSQ 67

Query: 62  ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL  G  R  +  R LIL PTRELA Q+ ++     K  +L+  L++GG+   AQ K+++
Sbjct: 68  ILALGDKRYPKTARALILVPTRELAVQIEESIRMVAKGSHLSTCLILGGVSRFAQIKRMK 127

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR++D  +   + ++    LV+DEADRMLDMGFI  +Q I  L+   RQT
Sbjct: 128 TGVDVLIATPGRLMDLVSEKCIDLSQSRFLVLDEADRMLDMGFIRDVQRIAKLLHEKRQT 187

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  +++N L  P +IE+    + A  I           S+K ++L + L 
Sbjct: 188 ALFSATMPREIVTLAKNLLNEPVKIEIVPQGTVATKITQKLYCV--PTSEKKSVLNKFL- 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   + + IIF   K     +  SL K G+SV AIHGN    +R + L  F+EG++ ++V
Sbjct: 245 TDPALASVIIFTRTKHGADAVARSLTKAGYSVAAIHGNKSHAARQRALKAFREGSVGILV 304

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           A+D+AARG+D+P V HV N+D+P+ AENY+HRIGRTGR    G A TL   K +   + A
Sbjct: 305 ATDIAARGIDVPGVSHVINYDLPDEAENYVHRIGRTGRNDTSGNAITLFDEKVEQVRLRA 364

Query: 360 IEKLIEKKV 368
           +E++I  K+
Sbjct: 365 VERVIRMKL 373


>gi|218780301|ref|YP_002431619.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761685|gb|ACL04151.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 430

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 152/371 (40%), Positives = 234/371 (63%), Gaps = 10/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F + G    V   +  AGY  PTPIQ K IP V+Q  D+ G+AQTGTGKTA+FVLP+L
Sbjct: 1   MNFTNFGFHKHVAAGISAAGYSTPTPIQEKAIPQVMQGRDLMGLAQTGTGKTAAFVLPIL 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +++K    VR    LI+ PTRELA Q  +     G + NL    + GG+  + Q K+L
Sbjct: 61  HRLMQKPGNGVR---ALIIAPTRELAEQTHEAINTLGAHTNLKSVSVYGGVNLQRQVKQL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-R 178
           ++ +D+++  PGR+LDH  R  + ++ +E+LV+DEAD+M DMGF+P I+ I + +P   R
Sbjct: 118 KQ-SDIVVACPGRLLDHIGRKNVDLSRVEMLVLDEADQMFDMGFLPDIRKILTFLPRKGR 176

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSATM  ++++++   L N   +++    + A+T++H F    AQ+ K  ALL QL
Sbjct: 177 QTLMFSATMPAQIKRLAGEVLHNHVLVQIGH-VAPADTVKHAFYPV-AQHLK-TALLLQL 233

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S  T ++ ++F   K     L + L K GFS  ++ GN+ Q  R+  ++ FK G  Q+
Sbjct: 234 LGSTGT-ESVLVFTRTKYKAKQLGNKLTKAGFSSASLQGNLSQSRRVDAMNGFKSGKYQV 292

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ +V HV N+D+P+  E Y+HRIGRTGRA R G+AFT +  +D + + 
Sbjct: 293 LVATDIAARGIDVANVSHVINYDMPSTPETYMHRIGRTGRAKRRGEAFTFITNDDRQMVR 352

Query: 359 AIEKLIEKKVD 369
           A+ + +   V+
Sbjct: 353 AVNRAVGSNVE 363


>gi|42521033|ref|NP_966948.1| DEAD-box ATP dependent DNA helicase [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410774|gb|AAS14882.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 408

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 152/364 (41%), Positives = 221/364 (60%), Gaps = 16/364 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++GL   +  A+       PTPIQI+ IPL LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFHEMGLPASLRQALDKNNLFVPTPIQIQAIPLALQGKDILGSAQTGTGKTLAFAIPLVA 62

Query: 62  ILEKGRARVRMPRT---LILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNK 117
            L      +  P T   L++ PTRELA QV +   K   +N  L VALLIGG P   Q  
Sbjct: 63  KL------LNEPNTGSALVIVPTRELAHQVTNEIRKLLSQNSALRVALLIGGEPIFRQLN 116

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L++   ++I TPGRI+DH  R  L+  N+ +LV+DE DRM DMGF   I+ I   +P  
Sbjct: 117 QLQKKPQIVIGTPGRIIDHIERKTLITRNVSVLVLDETDRMFDMGFGVQIEEIMKHLPKI 176

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC-ALLQ 236
           RQTL+FSAT+  ++ K++E +L  P+RI V+  ++T+  I+   V  YA  S+K   L+ 
Sbjct: 177 RQTLMFSATLPGDIVKLAEKYLNRPERISVDCEATTSVKIKQEIV--YASESEKYEKLVT 234

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           QL Q + ++   IIF   K+    L + L K  +S  AIHG++ Q  R +++++F+ G  
Sbjct: 235 QLCQREGSI---IIFVKTKRGADQLANRLHKDDYSALAIHGDLRQHKRERVINSFRRGRN 291

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q+MVA+D+A+RGLDIP + HV N+D P    +YIHRIGRT RAG  G A + V  +D + 
Sbjct: 292 QIMVATDVASRGLDIPHIQHVINYDAPQSQADYIHRIGRTARAGAEGYALSFVTPQDKRR 351

Query: 357 IDAI 360
           + A+
Sbjct: 352 LPAL 355


>gi|94676631|ref|YP_589051.1| inducible ATP-independent RNA helicase [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|94219781|gb|ABF13940.1| inducible ATP-independent RNA helicase [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 591

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 144/366 (39%), Positives = 229/366 (62%), Gaps = 11/366 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA +GL+  ++ A+ D GY  P+PIQ + IP +L   DV GIAQTG+GKTA+F LP+L  
Sbjct: 8   FAKMGLNILLLNALKDLGYETPSPIQAECIPHLLAGRDVLGIAQTGSGKTAAFALPLLHN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +     ++  P+ L+L PTRELA QV++   +F KY K  N  V  L GG  ++ Q + L
Sbjct: 68  IN---LKLNAPQVLVLAPTRELAVQVSEAYSDFAKYMKGIN--VVALYGGQRYDVQLRLL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G+ V++ TPGR+LDH  RG L ++++  LV+DEAD ML MGFI  ++NI + +P   Q
Sbjct: 123 RQGSQVIVGTPGRLLDHLKRGTLDLSHLHGLVLDEADEMLRMGFIEDVENILAQIPAKHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+  PK + + +  +    I   +   + +   K   L + L
Sbjct: 183 TALFSATMPEAIRRITRRFMTEPKEVHIESNIANRPDISQSYWTVHGRCKNKA--LARFL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +D     IIF   K   + +  SLE+ G++  A++G+++Q  R + LS  K G++ ++
Sbjct: 241 EVED-FDAAIIFVRTKNATLEVSQSLEQNGYNSAALNGDMNQALREQTLSRLKNGSLDVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  +E+YIHRIGRTGRAGR G+A   V + + + +  
Sbjct: 300 IATDVAARGLDVDRISLVVNYDIPLDSESYIHRIGRTGRAGRAGRALLFVEQRERRLLRN 359

Query: 360 IEKLIE 365
           IE+L++
Sbjct: 360 IERLMK 365


>gi|302388236|ref|YP_003824058.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
 gi|302198864|gb|ADL06435.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
           WM1]
          Length = 471

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 231/371 (62%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL + P ++ A+    Y+ PTPIQ + IP++L   D+ G AQTGTGKTA+F +P +
Sbjct: 1   MQFKDLNIIPDIIKALEKESYLIPTPIQEEAIPVILSGRDLLGCAQTGTGKTAAFAIPTI 60

Query: 61  TIL---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L   ++     +  R LI+ PTRELA Q+ ++F  YGK  +L   ++ GG+  + Q +
Sbjct: 61  QLLREEKESHGAKQNIRALIVTPTRELALQIYESFNTYGKFTDLKCCVVFGGVSQKPQEE 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL++  D+L+ TPGR+L   ++  + +++I+IL++DEADRMLDMGFI  ++ I +  P  
Sbjct: 121 KLKQRVDILVATPGRLLALIDQKIVNIDHIKILILDEADRMLDMGFIHDVKKIIARTPLK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTLLFSATM  ++ K++   L+ P +IE+   SST +TI       +   S K  LL  
Sbjct: 181 KQTLLFSATMPPDIAKLAGTILKAPAKIEITPVSSTVDTIGQYVY--FVDKSNKKDLLLH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+  + + + ++F   K     L   L +      AIHG+  Q +R   L+NFK  +++
Sbjct: 239 VLKDNNIV-SALVFTRTKHGADRLNKQLSRNNVIAQAIHGDKSQGARQSALNNFKNKSLR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARG+DI ++ HV N+D+P+  E Y+HRIGRTGRAG  G A +    ++ + +
Sbjct: 298 ILIATDIAARGIDIDELTHVINYDLPDIPETYVHRIGRTGRAGLGGTAISFCDYDEKEQL 357

Query: 358 DAIEKLIEKKV 368
           + IE+LI KK+
Sbjct: 358 NDIERLIGKKI 368


>gi|225627526|ref|ZP_03785563.1| DEAD-box ATP dependent DNA helicase [Brucella ceti str. Cudo]
 gi|225617531|gb|EEH14576.1| DEAD-box ATP dependent DNA helicase [Brucella ceti str. Cudo]
          Length = 549

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 155/386 (40%), Positives = 228/386 (59%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 103 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 162

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+  G + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 163 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 222

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 223 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 282

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I    V       +K  LL  +L 
Sbjct: 283 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 340

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 341 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 399

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358
           A+D+AARG+D+P   HV N+D P+  E Y+HRIGRTGR G  G + TL   A E+ K + 
Sbjct: 400 ATDIAARGIDVPGSSHVVNYDPPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 458

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
           A+E++   K+   +  +     P+ K
Sbjct: 459 AVERVTRSKLSIKDAPVKLAPAPVAK 484


>gi|254517068|ref|ZP_05129126.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3]
 gi|219674573|gb|EED30941.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3]
          Length = 609

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 223/371 (60%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L   ++ A+ D GY  P+ IQ  TIP +L+  D+ G AQTGTGKTA+F LP+L  
Sbjct: 10  FDELQLPAFLMKALSDVGYETPSAIQTMTIPPLLEGKDLVGQAQTGTGKTAAFALPILAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+    ++  P+ L+L PTRELA QVA+ F+KY ++     V  + GG  +  Q ++LER
Sbjct: 70  LD---PKLSKPQALVLAPTRELAIQVAEAFQKYARHSKGFKVLPIYGGSDYRTQLRQLER 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L ++ +  LV+DEAD ML MGFI  ++ I    P  RQ  
Sbjct: 127 GVHVIVGTPGRVMDHMRRGSLNLSALTTLVLDEADEMLRMGFIDDVEWILEQTPPKRQIA 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++++++  L  P+ I +   + T  +I          +  K   L ++L++
Sbjct: 187 LFSATMPDAIRRIAKQHLNKPEEITIKLKTVTNASIRQRVWMMGGMH--KLDALTRILET 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +DT    IIF   +     L   L  +G++  A++G+I Q  R K + N K+G + +++A
Sbjct: 245 EDT-DGVIIFVRTRIATQELADKLSARGYATAALNGDIAQNQREKTVENLKKGGLDILIA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+PN  E Y+HRIGRTGRAGR G+A    A  + + +  IE
Sbjct: 304 TDVAARGLDVERISHVINYDIPNDPEAYVHRIGRTGRAGRTGEAILFAANRERRLLRTIE 363

Query: 362 KLIEKKVDWLN 372
           ++  +K++ + 
Sbjct: 364 RVTGQKIESME 374


>gi|134277372|ref|ZP_01764087.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
 gi|226198998|ref|ZP_03794561.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
 gi|134251022|gb|EBA51101.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
 gi|225929098|gb|EEH25122.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
          Length = 513

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 151/390 (38%), Positives = 227/390 (58%), Gaps = 34/390 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 42  FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 101

Query: 63  L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99
                             + G  R R P+       L+L PTRELA QV      YGK+ 
Sbjct: 102 FAQLQKAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 161

Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L    ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRM
Sbjct: 162 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 221

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214
           LDMGFI  I  I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+     + S+ A
Sbjct: 222 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 281

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +T+ +           K  LL  LL+    +   IIF   K +   L   L   GF   A
Sbjct: 282 QTVHYV-----DDRDHKDRLLDHLLRDV-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 335

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIG
Sbjct: 336 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 395

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RTGRAGR G A +LV   +   +  IE+ +
Sbjct: 396 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 425


>gi|126453899|ref|YP_001066782.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
 gi|237812839|ref|YP_002897290.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
 gi|242315830|ref|ZP_04814846.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
 gi|254179293|ref|ZP_04885892.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1655]
 gi|254189321|ref|ZP_04895832.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pasteur 52237]
 gi|254198045|ref|ZP_04904467.1| DEAD/DEAH box helicase [Burkholderia pseudomallei S13]
 gi|126227541|gb|ABN91081.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
 gi|157937000|gb|EDO92670.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pasteur 52237]
 gi|169654786|gb|EDS87479.1| DEAD/DEAH box helicase [Burkholderia pseudomallei S13]
 gi|184209833|gb|EDU06876.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1655]
 gi|237504437|gb|ACQ96755.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
 gi|242139069|gb|EES25471.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
          Length = 513

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 151/390 (38%), Positives = 227/390 (58%), Gaps = 34/390 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 42  FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 101

Query: 63  L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99
                             + G  R R P+       L+L PTRELA QV      YGK+ 
Sbjct: 102 FAQLQKAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 161

Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L    ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRM
Sbjct: 162 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 221

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214
           LDMGFI  I  I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+     + S+ A
Sbjct: 222 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 281

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +T+ +           K  LL  LL+    +   IIF   K +   L   L   GF   A
Sbjct: 282 QTVHYV-----DDRDHKDRLLDHLLRDV-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 335

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIG
Sbjct: 336 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 395

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RTGRAGR G A +LV   +   +  IE+ +
Sbjct: 396 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 425


>gi|167855120|ref|ZP_02477892.1| intracellular septation protein A [Haemophilus parasuis 29755]
 gi|167853755|gb|EDS24997.1| intracellular septation protein A [Haemophilus parasuis 29755]
          Length = 603

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 142/370 (38%), Positives = 229/370 (61%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   ++ +V + G+V P+PIQ   IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 6   LTFADLGLPQSILNSVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             ++  +   R P+ L++ PTRELA QVAD  E++ KN   +    + GG  ++ Q + L
Sbjct: 66  AQIDPEQ---RHPQMLVMAPTRELAIQVADACEQFSKNMKGIRTVTIYGGQRYDIQIRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  V++ TPGRILDH  RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 KNGVQVVVGTPGRILDHIRRGTLDLSMLKAIVLDEADEMLRMGFIEDVETVMAELPEDHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+++P+ +++     +A  I   +      + K  ALL+ L 
Sbjct: 183 TALFSATMPEPIRRITKRFMKDPQEVKIQATQRSAPDIAQSYWLVNG-FRKNDALLRFL- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++    E+ G+   A++G++ Q++R + L   K G + ++
Sbjct: 241 -EVEEFDAAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQAREQALEKLKSGRLDVI 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 300 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLKN 359

Query: 360 IEKLIEKKVD 369
           IE LI+K +D
Sbjct: 360 IEHLIKKPID 369


>gi|241760530|ref|ZP_04758623.1| dead/deah box helicase [Neisseria flavescens SK114]
 gi|241319034|gb|EER55536.1| dead/deah box helicase [Neisseria flavescens SK114]
          Length = 464

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 147/369 (39%), Positives = 219/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L   D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALDGRDIMASAQTGSGKTAAFLLPTLQK 64

Query: 63  LEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++D    GK+  + +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIETIVEATPSDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    ++P+ IEV       +  E        ++  +  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPETIEVERVDDQGKIEEQLLYCDDMRHKNR--LLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 361 IEKYIARKL 369


>gi|167614869|ref|ZP_02383504.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis Bt4]
          Length = 465

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 154/392 (39%), Positives = 226/392 (57%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 10  FSALPLTPATLANLAQLGYTVMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    L+L PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 70  LDARRFDVQ---ALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  L P TRQTL
Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL+NPK +++      ++  +  +  T  +      LL +  + 
Sbjct: 187 LFSATYPDGIAKLSQQFLRNPKEVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLKHYRP 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 247 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 362

Query: 362 KLIEKKVDW-----LNGDLSS-LNPPLEKIDI 387
           + + + V+W     L  D +  L PP+E + I
Sbjct: 363 QALGRDVEWHPLAELKADGNEPLLPPMETLQI 394


>gi|53721181|ref|YP_110166.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei K96243]
 gi|121596589|ref|YP_990560.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei SAVP1]
 gi|126458103|ref|YP_001074245.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 1106a]
 gi|162210105|ref|YP_336816.2| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 1710b]
 gi|166999117|ref|ZP_02264963.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei PRL-20]
 gi|167722070|ref|ZP_02405306.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei DM98]
 gi|167741069|ref|ZP_02413843.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 14]
 gi|167818249|ref|ZP_02449929.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 91]
 gi|167826638|ref|ZP_02458109.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 9]
 gi|167848158|ref|ZP_02473666.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei B7210]
 gi|217422828|ref|ZP_03454330.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 576]
 gi|226198779|ref|ZP_03794343.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|242313771|ref|ZP_04812788.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1106b]
 gi|254182850|ref|ZP_04889443.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1655]
 gi|254189582|ref|ZP_04896092.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254264638|ref|ZP_04955503.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1710a]
 gi|254299641|ref|ZP_04967090.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           pseudomallei 406e]
 gi|52211595|emb|CAH37590.1| ATP-independent RNA helicase [Burkholderia pseudomallei K96243]
 gi|121224387|gb|ABM47918.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei SAVP1]
 gi|126231871|gb|ABN95284.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1106a]
 gi|157809522|gb|EDO86692.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           pseudomallei 406e]
 gi|157937260|gb|EDO92930.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|184213384|gb|EDU10427.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1655]
 gi|217393736|gb|EEC33756.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 576]
 gi|225929219|gb|EEH25242.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|242137010|gb|EES23413.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1106b]
 gi|243064681|gb|EES46867.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei PRL-20]
 gi|254215640|gb|EET05025.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1710a]
          Length = 465

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 153/393 (38%), Positives = 224/393 (56%), Gaps = 16/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 10  FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    L+L PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 70  LDARRFDVQ---ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL++PKR+++      ++  +  +  T  +      LL    + 
Sbjct: 187 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRP 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 247 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E Y+HRIGRTGRA + G A +L +  ++  +  IE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 362

Query: 362 KLIEKKVDW-------LNGDLSSLNPPLEKIDI 387
           + + ++V+W         GD + L PP+E + I
Sbjct: 363 QALAREVEWHPLAELKAGGD-APLLPPMETLQI 394


>gi|251796764|ref|YP_003011495.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
 gi|247544390|gb|ACT01409.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
          Length = 477

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 138/357 (38%), Positives = 220/357 (61%), Gaps = 6/357 (1%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           LS ++  A+   G+  PT +Q K IP+ L++ D+   +QTG+GKTA++ +P+  ++E   
Sbjct: 7   LSKEITTALSSLGFDTPTEVQAKVIPIALEKRDLVVKSQTGSGKTAAYGIPLCELVEWNE 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
            +   P+ LIL PTRELA QV ++    G+   +    L G  PF  Q  +L++   +++
Sbjct: 67  NK---PQALILTPTRELAVQVTEDITNIGRFKRIKATALYGKSPFHIQRAELKQRTHMVV 123

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+LDH  RG L ++ +  LVIDEAD ML+MGFI  +Q+I   +P  R T+LFSAT 
Sbjct: 124 GTPGRVLDHIERGTLALDKLAYLVIDEADEMLNMGFIEQVQSIIQALPKGRVTMLFSATF 183

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
            +++ K+S  ++ +P +IE+     T  TIEH  +    + + K ALLQ +L  ++   +
Sbjct: 184 PEDVAKLSRRYMDSPAQIEIQASGLTTATIEHSLIE--VKEADKLALLQDVLVVENP-DS 240

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            IIFC  ++NV  L  S+ +  +    IHG ++Q  R ++++ F+ G  + ++A+D+AAR
Sbjct: 241 CIIFCRTQENVDKLFRSMAELDYPCDRIHGGLEQEERFEVMNAFRRGQFRYLIATDVAAR 300

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           G+DI ++ HV N+D+P   E+Y+HR GRTGRAG++GKA T +A  D K +  IE  I
Sbjct: 301 GIDITNITHVINYDIPLEKESYVHRTGRTGRAGKNGKAITFLAPNDGKRLAEIEDYI 357


>gi|161723115|ref|YP_438416.2| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264]
          Length = 465

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 154/392 (39%), Positives = 226/392 (57%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 10  FSALPLTPATLANLAQLGYTVMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    L+L PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 70  LDARRFDVQ---ALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  L P TRQTL
Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL+NPK +++      ++  +  +  T  +      LL +  + 
Sbjct: 187 LFSATYPDGIAKLSQQFLRNPKEVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLKHYRP 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 247 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 362

Query: 362 KLIEKKVDW-----LNGDLSS-LNPPLEKIDI 387
           + + + V+W     L  D +  L PP+E + I
Sbjct: 363 QALGRDVEWHPLAELKADGNEPLLPPMETLQI 394


>gi|317485703|ref|ZP_07944574.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
 gi|316923068|gb|EFV44283.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
          Length = 594

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 145/348 (41%), Positives = 218/348 (62%), Gaps = 8/348 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS +++ AV D G+ +P+PIQ+  IP +L   D  G AQTGTGKTA+F LP+L  
Sbjct: 5   FTELGLSQELLKAVEDLGFEEPSPIQVLAIPALLTGKDAVGQAQTGTGKTAAFGLPILEK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121
           +  G++     + L+L PTRELA QV++   K       ++V  + GG P E Q + L +
Sbjct: 65  IASGKS----VQALVLCPTRELAIQVSEELSKLAVHKRGVSVLPIYGGQPIERQLRALAK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  RG L +N   I+V+DEAD MLDMGF   I+ I    P   Q +
Sbjct: 121 GAQVVVGTPGRVIDHLQRGTLRLNEARIVVLDEADEMLDMGFREDIELILEQSPADCQRV 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++S+ FL+ P+ + +     T   IE  +      Y K  AL + +L S
Sbjct: 181 LFSATMPQPIRELSKRFLREPEMLTIAHKMLTVPAIEQVYYEVRP-YQKMDALCR-VLDS 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   +  ++FC  K++V  +   L+++G+    +HG+++Q  R +++S F+   I+++VA
Sbjct: 239 QG-FRKALVFCATKRSVDEITVHLQQRGYQADGLHGDMNQTQRDRVMSRFRTDGIEILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +D+AARG+D+ DV  V N+D+P+  E Y+HRIGRTGRAGR GKAFT V
Sbjct: 298 TDVAARGIDVDDVDAVINYDIPHDVEGYVHRIGRTGRAGREGKAFTFV 345


>gi|312197808|ref|YP_004017869.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
 gi|311229144|gb|ADP81999.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
          Length = 566

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 150/361 (41%), Positives = 216/361 (59%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ A+ + GY  P+PIQ  TIP +L   DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 10  FHDLGLGSPVLRALTELGYEVPSPIQAGTIPALLDGRDVVGLAQTGTGKTAAFALPILSR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++   AR    + L+L PTREL  QVA+ F +Y  +   L V  + GG  +  Q     R
Sbjct: 70  ID---ARSTATQALVLAPTRELVLQVAEAFGRYAHHLTGLHVLPVYGGQAYAPQLAGFRR 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  RG L +  + +LV+DEAD ML MGF   +  I +  P  +Q  
Sbjct: 127 GAQVVVGTPGRVIDHLERGTLDLGGLRMLVLDEADEMLRMGFQEEVDRILADTPDAKQVA 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++S  +L++P  I V   + TA      F+ T A   K  AL + L   
Sbjct: 187 LFSATMPAPIRRISRQYLRDPVEITVRARTVTAANTRQRFL-TVAGPRKMDALTRVL--E 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  IIF   K    ++   L  +GF+  AI+G++ Q  R K+++  ++GT+ L+VA
Sbjct: 244 VEPFEAMIIFVRTKSATEDVAERLRSRGFATEAINGDLSQPQREKLIAQLRDGTLDLLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A  LV   +   + AIE
Sbjct: 304 TDVAARGLDVERITHVVNYDIPTDPESYVHRIGRTGRAGRSGEALLLVTPREKGLLAAIE 363

Query: 362 K 362
           K
Sbjct: 364 K 364


>gi|134292614|ref|YP_001116350.1| ATP-dependent RNA helicase DbpA [Burkholderia vietnamiensis G4]
 gi|134135771|gb|ABO56885.1| ATP-dependent RNA helicase DbpA [Burkholderia vietnamiensis G4]
          Length = 465

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 154/392 (39%), Positives = 229/392 (58%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GYV  TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L+ 
Sbjct: 9   FSALPLTPATLANLTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    +IL PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 69  LDARRFDVQ---AMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH  RG L ++ +  LV+DEADRMLDMGF   I  +  + P TRQTL
Sbjct: 126 GAHVVVGTPGRIMDHLERGNLKLDALNTLVLDEADRMLDMGFFDDIVKVARMCPATRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL+NPK +++      ++  +  +  T    +++   + QLL  
Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEVKLAERHDDSKIRQRFYEVT---DTERLHAVGQLLNH 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 243 YRPVST-IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 361

Query: 362 KLIEKKVDWLN------GDLSSLNPPLEKIDI 387
           +  ++ V+W +       D  +L PP+E + I
Sbjct: 362 QAQKRDVEWHSLAELKPADEGTLLPPMETLQI 393


>gi|262274077|ref|ZP_06051889.1| cold-shock DEAD-box protein A [Grimontia hollisae CIP 101886]
 gi|262221887|gb|EEY73200.1| cold-shock DEAD-box protein A [Grimontia hollisae CIP 101886]
          Length = 618

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 221/369 (59%), Gaps = 7/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L L+  ++ A+   G+V PTPIQ  +IPL++   D  G AQTGTGKTA+F LP+L 
Sbjct: 7   EFRQLDLAENILSALDAIGFVSPTPIQAASIPLLMTGVDALGKAQTGTGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L+ G+   R P+ +++ PTRELA QVA   +  G+  + L V  + GG     Q + L 
Sbjct: 67  KLDLGQ---RKPQAIVMAPTRELAIQVAAEMKALGQKIDGLKVLEIYGGASIVDQMRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ D  NR +L ++ +   V+DEAD ML MGF+  +  I    P + Q 
Sbjct: 124 AGAHIVVGTPGRVKDLINRERLQLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPESAQR 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++++ + FL+ P RI+V   + T E +E  F        +K   + +LL+
Sbjct: 184 VLFSATMPPMVKEIVDRFLREPARIDVAGSNRTVEKVEQQFWVVKG--VEKDEAMSRLLE 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K G I ++V
Sbjct: 242 TEET-DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVEHIKRGVIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  I
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRAGKAILLVRTNQIRMLRTI 360

Query: 361 EKLIEKKVD 369
           E++   +++
Sbjct: 361 ERVTSTRME 369


>gi|167913398|ref|ZP_02500489.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 112]
          Length = 465

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 153/393 (38%), Positives = 224/393 (56%), Gaps = 16/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 10  FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    L+L PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 70  LDARRFDVQ---ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL++PKR+++      ++  +  +  T  +      LL    + 
Sbjct: 187 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRP 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 247 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E Y+HRIGRTGRA + G A +L +  ++  +  IE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 362

Query: 362 KLIEKKVDW-------LNGDLSSLNPPLEKIDI 387
           + + ++V+W         GD + L PP+E + I
Sbjct: 363 QALAREVEWHPLAELKAGGD-APLLPPMETLQI 394


>gi|308071529|ref|YP_003873134.1| ATP-dependent RNA helicase dbpA [Paenibacillus polymyxa E681]
 gi|305860808|gb|ADM72596.1| ATP-dependent RNA helicase dbpA [Paenibacillus polymyxa E681]
          Length = 481

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 141/362 (38%), Positives = 220/362 (60%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS ++V A+   GY  PT IQ + IP+ L++ D+   +QTG+GKTA++ +P+  +
Sbjct: 6   FTDYALSEEIVRALSSLGYETPTEIQTEVIPVALEKKDLVAKSQTGSGKTAAYGIPICEL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    +   P+ LIL PTRELA QV ++    G+   +    L G  PF  Q  +L++ 
Sbjct: 66  VDWNENK---PQALILTPTRELALQVTEDITNIGRFKRIKATPLYGKHPFHIQKAELKQR 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V + TPGR+LDH  RG L ++ I  LVIDEAD ML+MGFI  +Q+I   +P  R T+L
Sbjct: 123 THVAVGTPGRVLDHIERGTLSLDRIAYLVIDEADEMLNMGFIEQVQSIIQALPSDRVTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT  +++  +S  ++ +P +IE+     T  TI+H  +    + S K ALLQ LL  +
Sbjct: 183 FSATFPEDVATLSRKYMNDPVKIEIKATGITTATIDHSLIQ--VKESDKLALLQDLLIVE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV  L  +L    +    IHG ++Q  R ++++ F+ G  + ++A+
Sbjct: 241 NP-DSCIIFCRTQENVDTLFRALADLEYPCDRIHGGMEQDERFEVMNAFRRGQFRYLIAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG+ GKA +L+  +D + +  IE 
Sbjct: 300 DVAARGIDITNITHVINYDIPLEKESYVHRTGRTGRAGKTGKAISLITPKDGRRLADIEA 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|323499260|ref|ZP_08104237.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326]
 gi|323315648|gb|EGA68682.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326]
          Length = 646

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 145/368 (39%), Positives = 225/368 (61%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L+  ++ A+   G+V PTPIQ  +IP +++  D  G AQTGTGKTA+F LP+L  
Sbjct: 8   FSDLALNDSILSALEGMGFVSPTPIQAASIPHLMEGVDALGKAQTGTGKTAAFSLPLLNK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           L+ G+   R P+ ++L PTRELA QVA   +  G+N + L V  + GG     Q + L+ 
Sbjct: 68  LDLGQ---RKPQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGTSIVDQMRALKH 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ D  NR +L ++ +   V+DEAD ML+MGF+  +  I    P + Q +
Sbjct: 125 GAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   L+ + E FL+ P  I+V   + T + +E  F        +K   + +LL++
Sbjct: 185 LFSATMPPMLKNIVERFLREPVTIDVAGKNHTVDKVEQQFWVVKG--VEKDEAMSRLLET 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++T  + I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++VA
Sbjct: 243 EETDAS-IVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    ++ +  IE
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTIE 361

Query: 362 KLIEKKVD 369
           ++ +  ++
Sbjct: 362 RVTKSSME 369


>gi|254195234|ref|ZP_04901662.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei S13]
 gi|169651981|gb|EDS84674.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei S13]
          Length = 465

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 153/393 (38%), Positives = 224/393 (56%), Gaps = 16/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 10  FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    L+L PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 70  LDTRRFDVQ---ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL++PKR+++      ++  +  +  T  +      LL    + 
Sbjct: 187 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRP 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 247 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E Y+HRIGRTGRA + G A +L +  ++  +  IE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 362

Query: 362 KLIEKKVDW-------LNGDLSSLNPPLEKIDI 387
           + + ++V+W         GD + L PP+E + I
Sbjct: 363 QALAREVEWHPLAELKAGGD-APLLPPMETLQI 394


>gi|124381735|ref|YP_001025050.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei NCTC 10229]
 gi|126447168|ref|YP_001079394.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei NCTC 10247]
 gi|254356161|ref|ZP_04972438.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei 2002721280]
 gi|126240022|gb|ABO03134.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei NCTC 10247]
 gi|148025144|gb|EDK83313.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei 2002721280]
 gi|261826475|gb|ABN00540.2| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei NCTC 10229]
          Length = 463

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 153/393 (38%), Positives = 224/393 (56%), Gaps = 16/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 10  FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    L+L PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 70  LDARRFDVQ---ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL++PKR+++      ++  +  +  T  +      LL    + 
Sbjct: 187 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRP 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 247 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E Y+HRIGRTGRA + G A +L +  ++  +  IE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 362

Query: 362 KLIEKKVDW-------LNGDLSSLNPPLEKIDI 387
           + + ++V+W         GD + L PP+E + I
Sbjct: 363 QALAREVEWHPLAELKAGGD-APLLPPMETLQI 394


>gi|148825485|ref|YP_001290238.1| preprotein translocase subunit SecF [Haemophilus influenzae PittEE]
 gi|229846320|ref|ZP_04466428.1| preprotein translocase subunit SecF [Haemophilus influenzae 7P49H1]
 gi|89892371|gb|ABD78963.1| HI0231-like protein [Haemophilus influenzae]
 gi|148715645|gb|ABQ97855.1| preprotein translocase subunit SecF [Haemophilus influenzae PittEE]
 gi|229810413|gb|EEP46131.1| preprotein translocase subunit SecF [Haemophilus influenzae 7P49H1]
          Length = 613

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 145/369 (39%), Positives = 230/369 (62%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L  
Sbjct: 7   FNDLGLPEFILKAVSDLGFETPSPIQQACIPHLLSGNDVLGMAQTGSGKTAAFALPLLAQ 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++      + P+ L++ PTRELA QVAD  E++ K  +   +  L GG  ++ Q + L++
Sbjct: 67  IDPSE---KHPQMLVMAPTRELAIQVADACEQFVKYAHGSRIVTLYGGQRYDIQLRALKQ 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   QT 
Sbjct: 124 GAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240
           LFSATM + ++++++ F+ +PK +++   +  A  IE  C+   Y    +K   L + L+
Sbjct: 184 LFSATMPEPIRRITKRFMNDPKEVKIKVNNENAPDIEQSCW---YVHGVRKNEALLRFLE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++V
Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 361 EKLIEKKVD 369
           E L++K ++
Sbjct: 360 EHLMKKGIN 368


>gi|329900791|ref|ZP_08272595.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
 gi|327549380|gb|EGF33948.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
          Length = 468

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 146/393 (37%), Positives = 231/393 (58%), Gaps = 29/393 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   V+ A+ ++GY+KPT +Q + IP  ++  D+   +QTG+GKTA+F+LP L
Sbjct: 1   MTFEALGLHTSVIKALTESGYIKPTSVQEQAIPAAIEGRDLLVSSQTGSGKTAAFMLPAL 60

Query: 61  -----------------------TILEKG---RARVRMPRTLILEPTRELAAQVADNFEK 94
                                  + L +G   R +   P+ L+L PTRELA QV    +K
Sbjct: 61  HKFATAAELQLADSSKTPNQEKQSALARGERPRFKAAQPKMLVLTPTRELALQVTTATDK 120

Query: 95  YGKNYNLTVAL-LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVID 153
           YG       A+ ++GG+P+  Q + L +  ++L+ TPGR++DH   GK+  + +EILV+D
Sbjct: 121 YGSQMRRIKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLEILVLD 180

Query: 154 EADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
           EADRMLDMGFI  I+ I +  P +RQT+LFSAT+   +  +++   +NP  I++   ++ 
Sbjct: 181 EADRMLDMGFIDDIEKIVAATPESRQTMLFSATLDGVVGNMAKRITKNPMIIQIAGSATK 240

Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            E I    V      S K  LL  LL+ + TM   ++F   K++   +   L   GF+  
Sbjct: 241 HENISQR-VHFVDDLSHKNRLLDHLLRDE-TMDQAVVFTATKRDADTIADRLNIAGFAAA 298

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
           A+HG++ Q +R + L   + G ++++VA+D+AARG+D+P + HVFN+D+P   E+Y+HRI
Sbjct: 299 ALHGDMHQGARNRTLDGMRRGQVRVLVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 358

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           GRTGRAGR+G A +LV   +  ++  IE+  ++
Sbjct: 359 GRTGRAGRNGIAVSLVNHAEGINVKRIERFTKQ 391


>gi|187778617|ref|ZP_02995090.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC
           15579]
 gi|187772242|gb|EDU36044.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC
           15579]
 gi|322807112|emb|CBZ04686.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
          Length = 524

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 146/385 (37%), Positives = 240/385 (62%), Gaps = 9/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
           +F +L L+  V+ A+   G+  P+ IQ K+IP+VL+  DV   AQTGTGKT +F  P++ 
Sbjct: 5   NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+ ++G+ +    + L+L PTRELA Q+ D  ++  K     V  + GG   E Q K ++
Sbjct: 65  TLCDEGKKK--GVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+++ TPGR+LDH NR  L +  I+ LV+DEAD ML+MGFI  I+ I +  P  +QT
Sbjct: 123 SGVDIVVGTPGRVLDHINRRTLKLGGIDFLVLDEADEMLNMGFIEDIETIMASTPEEKQT 182

Query: 181 LLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSATM   ++K++ N+++ + + I +   S T + I   + A   +   K   + +++
Sbjct: 183 MLFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFA--VKNKDKLEAICRII 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S++  ++ IIFC  K+ V  L  +++ +G++V  +HG++ Q  R+  L  FK+ T+  +
Sbjct: 241 DSEEP-ESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ ++ HV N+D+P  AE+Y+HRIGRTGRA + G A++LV   ++  I  
Sbjct: 300 VATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQ 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE++I+ K+     +L +L   LEK
Sbjct: 360 IERIIKSKI--TKKELPTLEDILEK 382


>gi|167035770|ref|YP_001671001.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida GB-1]
 gi|166862258|gb|ABZ00666.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 443

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 150/370 (40%), Positives = 222/370 (60%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+FA LGL   ++  +    Y  PTP+Q K IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               LE  +      R L+L PTRELA QV +N  +Y +N  L+   + GG+    Q  +
Sbjct: 61  QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+LD F +  +  N ++ LV+DEADRMLD+GF   +Q++ + +P  R
Sbjct: 121 LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D+++ ++   L +P  IEV+  ++TA +++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDQIRVLAGLALNDPLSIEVSPRNATATSVKQWLVPV--DKKRKEDLFCHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ Q      ++F   +  V  L   L  +G +   IHG+  Q +R + L +FK   +Q+
Sbjct: 239 LRKQ-RWTQVLVFAKTRNGVDQLVQRLLAEGVNADGIHGDRPQATRQRALDSFKAREVQV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLA 357

Query: 359 AIEKLIEKKV 368
           AIE L  + +
Sbjct: 358 AIEVLTRQTL 367


>gi|74318833|ref|YP_316573.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
 gi|74058328|gb|AAZ98768.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 533

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 146/372 (39%), Positives = 223/372 (59%), Gaps = 6/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL P ++ +VL AGY   TP+Q + IP  L   D+   + TG+GKTA+F+LP +
Sbjct: 1   MSFSELGLDPLILKSVLAAGYENATPVQQQAIPAALSGGDLLVSSHTGSGKTAAFLLPSI 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
             +L +   +   PR L+L PTRELA QV      YGK       A L+GG P+  Q K+
Sbjct: 61  QRLLAEPAVKSIGPRVLVLTPTRELALQVEKAAMTYGKEMRRFRTACLVGGAPYGLQLKR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  DV++ TPGR++DH  RGK+  + +E+LV+DEADRMLDMGF+  I+ I +  P  R
Sbjct: 121 LSQPVDVVVATPGRLIDHLERGKIDFSRLEVLVLDEADRMLDMGFVDDIKAIAARCPAER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTLLFSAT+   +  ++    ++ +RIE+   P   A+  +    A    +  K  LL  
Sbjct: 181 QTLLFSATLDGVVGNLARELTRDAQRIEIEAVPHKEAKIEQRLLFADNMDH--KNRLLDA 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+  + M   I+F + K++   +   L + GF+  A+HG++ Q  R + L   +EG  +
Sbjct: 239 LLRDVE-MVQAIVFASTKRSTEEISDLLAESGFASDALHGDMQQGQRNRALQRLREGRTR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+  + HV NFD+P +AE+Y+HRIGRTGRAGR G A +     +   +
Sbjct: 298 VLVATDVAARGIDVASISHVINFDLPRQAEDYVHRIGRTGRAGRTGIAVSFAGMREGGLV 357

Query: 358 DAIEKLIEKKVD 369
             IE+    +++
Sbjct: 358 KNIERYTGNRIE 369


>gi|258591206|emb|CBE67503.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
           (rhlE gene) [NC10 bacterium 'Dutch sediment']
          Length = 479

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 158/393 (40%), Positives = 229/393 (58%), Gaps = 16/393 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+   L+  ++ AV + G+  PTPIQ   +P +L+  DV   A TG+GKTA+F+LP+L
Sbjct: 1   MSFSSFKLNANLLKAVHNMGFKSPTPIQRVAVPPLLEGRDVMASAVTGSGKTAAFLLPIL 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++EK R   R    L+L PTRELAAQ++D+  +   +  L  A + GG+    Q +  
Sbjct: 61  HCLMEKPRGTTR---ALVLAPTRELAAQISDHLRELAAHTPLKGAAVYGGVSMGPQEQAF 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DVLI TPGR+LDHF      +  IE LV+DEADRMLDMGF+P I+ I   VP  RQ
Sbjct: 118 RRGVDVLIATPGRLLDHFQYPYARLAGIEHLVLDEADRMLDMGFLPDIRRILQHVPKKRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT+   + +++ + LQNP  + +   ++ A  I H  VA    +  K  L  +L+
Sbjct: 178 TLLFSATLPAPIMELARDMLQNPVSLNIERKAAPAAGITH--VAYPVPHELKSTLFLELV 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++  + K+ + F   K     L   LEK G +   IHGN  Q  R + L++FK G  +++
Sbjct: 236 KNSAS-KHVLAFTRTKHRANRLADFLEKHGVTCERIHGNRSQAQRTEALASFKRGRCRVL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  +G V NFDVP   E+YIHR+GRTGR    G A+TLV+  +   + A
Sbjct: 295 VATDIAARGIDVEALGLVVNFDVPQLPEDYIHRVGRTGRVDATGDAYTLVSPNEEGTLRA 354

Query: 360 IE-----KLIEKKVDWLNGDLSSLNPPLEKIDI 387
           IE     +L  +KV   N   +    P E+ ++
Sbjct: 355 IESNIGTRLPRQKVQGFNYATT----PTERFEV 383


>gi|210623578|ref|ZP_03293904.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
 gi|210153448|gb|EEA84454.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
          Length = 538

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 151/368 (41%), Positives = 223/368 (60%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL ++  +  A+ + G+ +P+PIQ K+IP++L+  DV G AQTGTGKTA+F +P   I
Sbjct: 6   FEDLDINQNIKKAIAEMGFEEPSPIQAKSIPVILEGKDVIGQAQTGTGKTAAFSIP---I 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLER 121
           LEK     R  + ++L PTRELA QV+    K  K       L I GG P + Q K L+ 
Sbjct: 63  LEKIDPNDRSLQAIVLCPTRELAIQVSQEIRKLAKYMQGIKTLPIYGGQPIDRQIKALKG 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+I TPGR +DH  R  +   N++++V+DEAD MLDMGF   I+ I   VP  RQT 
Sbjct: 123 GVQVIIGTPGRTIDHIKRKTIKPGNVKMVVLDEADEMLDMGFREDIETILENVPEERQTT 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   + ++++ +   P+ I+V     T E I+  ++ T A  S K  +L +L+  
Sbjct: 183 FFSATMPKAILELTKKYQNEPEHIKVVRKELTVENIKQYYIETRA--SNKIEVLSRLIDV 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  K  ++FCN KK    L   L+ +G+   A+HG++ Q  R  ++  F+ GTI ++VA
Sbjct: 241 YNP-KLSVVFCNTKKGADELVGELQGRGYFADALHGDLKQVQRDIVMDKFRNGTIDILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFNFD+P   E Y+HRIGRTGRAGR G +F+ V   D++ +  IE
Sbjct: 300 TDVAARGIDVDDVECVFNFDLPQDEEYYVHRIGRTGRAGREGLSFSFVYGRDMRKMKDIE 359

Query: 362 KLIEKKVD 369
           +  + K++
Sbjct: 360 RYTKSKLE 367


>gi|114563961|ref|YP_751475.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114335254|gb|ABI72636.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 423

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 146/375 (38%), Positives = 224/375 (59%), Gaps = 8/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL P ++ AV  +GY   TP+Q   IPL L   DV   A+TGTGKTA+F LP+L
Sbjct: 1   MSFTSLGLPPLLLDAVNQSGYQTATPVQQAVIPLALDGRDVLASAETGTGKTAAFALPLL 60

Query: 61  TILEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           + L        +P    R LI+ PTRELA Q+  N  KY +  NLT   + GG     Q 
Sbjct: 61  SHLMNQDHSDLLPANRLRALIMTPTRELAIQIEQNLVKYSQFINLTSLAVYGGASINPQR 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K LE+G D+L+ TPGR+ D   + +L ++ +  LVIDEADRMLD+GF+  I+ +  L+  
Sbjct: 121 KALEQGIDILVATPGRLFDIIGQHELDLSFVTHLVIDEADRMLDLGFVKDIEKVKRLIAR 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             QT++FSAT +++++ ++   L NP+ + V T ++ A  ++  +        +K  LL 
Sbjct: 181 QHQTMMFSATFSEDVKTLAAKMLNNPEYVHVETQTTAANVVQQVY---QVDTRRKAELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L+  +   +  ++F ++K+   +L   L   G      HG+  Q +R + L  FK G +
Sbjct: 238 ELI-GKHNWQQVMVFTSRKETADHLYRELSLDGIKSSVFHGDKSQGARNRALEEFKTGQL 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++A+DLAARGLDI  +  V NF++P   E+YIHRIGRTGRAG  G+A +LV+ ++++ 
Sbjct: 297 RVLIATDLAARGLDIQALPRVINFELPEECEDYIHRIGRTGRAGLGGEAISLVSPQELEL 356

Query: 357 IDAIEKLIEKKVDWL 371
           + AIE+LIE+ +  L
Sbjct: 357 LGAIEQLIEQSLPIL 371


>gi|161870238|ref|YP_001599408.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
           053442]
 gi|161595791|gb|ABX73451.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
           053442]
          Length = 462

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 219/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQK 64

Query: 63  LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    ++P+ IEV       +  E        ++  K  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 361 IEKYINRKL 369


>gi|161524403|ref|YP_001579415.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|189350842|ref|YP_001946470.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
 gi|160341832|gb|ABX14918.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
           ATCC 17616]
 gi|189334864|dbj|BAG43934.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
          Length = 505

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 153/409 (37%), Positives = 233/409 (56%), Gaps = 36/409 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 32  FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 91

Query: 63  L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99
                              +G  R R P+       L+L PTRELA QV      YGK+ 
Sbjct: 92  FAQLQKAQAQQPRAPREANQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 151

Query: 100 -NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L    ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRM
Sbjct: 152 KRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 211

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214
           LDMGFI  I+ I    P +RQT+LFSAT+  ++  ++   L++P+RIE+     + ++ A
Sbjct: 212 LDMGFIEDIETIVEATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIA 271

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +T+ +           K  LL  LL+    +   IIF   K +   L   L   GF   A
Sbjct: 272 QTVHYV-----DDRDHKDRLLDHLLRDA-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 325

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIG
Sbjct: 326 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 385

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381
           RTGRAGR G A +LV   +   +  IE+ +     V+ + G      PP
Sbjct: 386 RTGRAGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRKTPP 434


>gi|292558860|gb|ADE31861.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           suis GZ1]
          Length = 502

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 141/359 (39%), Positives = 223/359 (62%), Gaps = 6/359 (1%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM 72
           + AV  AG+  P+PIQ +TIPL L+  DV G AQTGTGKTA+F LP L  ++     ++ 
Sbjct: 1   MLAVEKAGFETPSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLNKIDTNNQAIQ- 59

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
             +LI+ PTRELA Q  +   K+G+   + V  + GG   E Q K L  GA +++ TPGR
Sbjct: 60  --SLIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGR 117

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           +LD   R  L ++ +E L++DEAD ML+MGF+  I+ I   VP +RQTLLFSATM + ++
Sbjct: 118 LLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPESRQTLLFSATMPEPIK 177

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           ++   F++ P+ +++     T   ++  ++    +  +K   + +L+   D  +  I+F 
Sbjct: 178 RIGVKFMKEPEHVKIAAKELTNVNVDQYYL--RVKEHEKFDTMTRLMDV-DQPELSIVFG 234

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             K+ V  L   L+ +GF    IHG++DQ  R++++ +FK   I ++VA+D+AARGLDI 
Sbjct: 235 RTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLVATDVAARGLDIS 294

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
            V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  IE L +K++  L
Sbjct: 295 GVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLAIIEDLTKKRMKGL 353


>gi|145631096|ref|ZP_01786871.1| preprotein translocase subunit SecF [Haemophilus influenzae R3021]
 gi|144983381|gb|EDJ90863.1| preprotein translocase subunit SecF [Haemophilus influenzae R3021]
          Length = 614

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 145/369 (39%), Positives = 231/369 (62%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L  
Sbjct: 7   FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQ 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121
           ++      + P+ L++ PTRELA QVAD  E++ K  + T +  L GG  ++ Q + L++
Sbjct: 67  IDPSE---KHPQMLVMAPTRELAIQVADACEQFVKYAHGTRIVTLYGGQRYDIQLRALKQ 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   QT 
Sbjct: 124 GAQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240
           LFSATM + ++++++ F+ +P+ +++   +  A  IE  C+   Y    +K   L + L+
Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIEQSCW---YVHGVRKNEALLRFLE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++V
Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 361 EKLIEKKVD 369
           E L++K ++
Sbjct: 360 EHLMKKGIN 368


>gi|83652036|gb|ABC36100.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264]
          Length = 562

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 154/392 (39%), Positives = 226/392 (57%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 107 FSALPLTPATLANLAQLGYTVMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 166

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    L+L PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 167 LDARRFDVQ---ALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH 223

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  L P TRQTL
Sbjct: 224 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTL 283

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL+NPK +++      ++  +  +  T  +      LL +  + 
Sbjct: 284 LFSATYPDGIAKLSQQFLRNPKEVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLKHYRP 343

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 344 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 399

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 400 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 459

Query: 362 KLIEKKVDW-----LNGDLSS-LNPPLEKIDI 387
           + + + V+W     L  D +  L PP+E + I
Sbjct: 460 QALGRDVEWHPLAELKADGNEPLLPPMETLQI 491


>gi|254230057|ref|ZP_04923456.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|151937445|gb|EDN56304.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
          Length = 471

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 147/367 (40%), Positives = 225/367 (61%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+P ++  +    Y   TPIQ  ++P +L+  DV G  +TG+GKTA+F L +L+ 
Sbjct: 18  FDQVGLNPALLATLDSLNYTHMTPIQALSLPAILKHRDVIGQGKTGSGKTAAFGLGVLSN 77

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA      G+  +N+ V  L GG+P   Q   LE 
Sbjct: 78  LNVKRFRVQ---SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEH 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH  +G++ ++ +  LV+DEADRMLDMGF   +  I    P  RQTL
Sbjct: 135 GAHILVGTPGRILDHLEKGRINLSELNTLVLDEADRMLDMGFQDALDAIIDAAPKQRQTL 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  ++++++++  +Q P+ I+V +   T+   +H F       ++  AL   LL  
Sbjct: 195 LFSATFPEKIEQIAQRIMQTPEVIKVESTHDTSSIAQH-FYKVEGSEARDEALANLLLTH 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ ++FCN KK V ++   L ++GFSV  IHG+++QR R + L  F   ++ ++VA
Sbjct: 254 QP--ESAVVFCNTKKEVQSVADELHRKGFSVIDIHGDLEQRERDQALVQFANKSVSILVA 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+   ++D   +  IE
Sbjct: 312 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIE 371

Query: 362 KLIEKKV 368
           + +E  V
Sbjct: 372 EYLEMDV 378


>gi|326519741|dbj|BAK00243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 649

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 220/369 (59%), Gaps = 8/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G   +++  V  AG+  P+PIQ ++ P+ L+  D+  +A+TG+GKT  ++LP  
Sbjct: 161 MSFQSTGFPSEILREVQQAGFSAPSPIQAQSWPIALKGSDIVAVAKTGSGKTLGYLLPGF 220

Query: 61  TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +++  R   R  P  L+L PTRELA Q+ D   K+G++  ++   L GG P   Q + L
Sbjct: 221 ILVKNLRHNSRDGPTVLVLSPTRELATQIQDEAIKFGRSSRISSTCLYGGAPKGPQLRDL 280

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGAD+++ TPGR+ D    GK+ +  +  LV+DEADRMLDMGF P I+ I   V   RQ
Sbjct: 281 ERGADIVVATPGRLNDILEMGKVSLRQVAYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQ 340

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS---KKCALLQ 236
           TL+F+AT   E++K++ + L NP ++ +    +T E + +  +  Y + +   +K   L 
Sbjct: 341 TLMFTATWPREVRKIASDLLTNPVQVNIG---NTDELVANKSITQYVEVTTSMEKGRRLD 397

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q+L+ Q+     IIFC+ K+    L  +L +Q +   AIHG+  Q  R  +LS F+ G  
Sbjct: 398 QILRQQEPGSKVIIFCSTKRMCDQLSRNLSRQ-YGASAIHGDKSQAERDSVLSEFRTGRC 456

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+ D+  V N+D P   E+Y+HRIGRTGRAG  G A+T    +D K+
Sbjct: 457 PILVATDVAARGLDVKDIRVVVNYDFPTGVEDYVHRIGRTGRAGASGIAYTFFCDQDSKY 516

Query: 357 IDAIEKLIE 365
              + K++E
Sbjct: 517 ASDLVKILE 525


>gi|296314174|ref|ZP_06864115.1| putative ATP-dependent RNA helicase RhlE [Neisseria polysaccharea
           ATCC 43768]
 gi|296839180|gb|EFH23118.1| putative ATP-dependent RNA helicase RhlE [Neisseria polysaccharea
           ATCC 43768]
          Length = 457

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 147/369 (39%), Positives = 219/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64

Query: 63  LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFGRLEVLILDEADRMLDMGFIDDIETIVEATPSDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    ++P+ IEV       +  E        ++  +  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNR--LLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 361 IEKYINRKL 369


>gi|325521922|gb|EGD00628.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. TJI49]
          Length = 464

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 152/392 (38%), Positives = 225/392 (57%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GYV  TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L+ 
Sbjct: 9   FSALPLTPAALANLAQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    ++L PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 69  LDARRFDVQ---AMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  L P TRQTL
Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLQLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL+NPK +++      ++  +  +  T  +      +L    + 
Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEVKLEERHDDSKIRQRFYEVTETERLHAVGMLLNHYRP 245

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 246 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 361

Query: 362 KLIEKKVDW------LNGDLSSLNPPLEKIDI 387
           +  ++ V+W            +L PP+E + I
Sbjct: 362 QAQKRDVEWHPLAELKPASDQTLLPPMETLQI 393


>gi|167576699|ref|ZP_02369573.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis TXDOH]
          Length = 465

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 154/392 (39%), Positives = 226/392 (57%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 10  FSALPLTPATLANLAQLGYTVMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    L+L PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 70  LDARRFDVQ---ALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  L P TRQTL
Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL+NPK +++      ++  +  +  T  +      LL +  + 
Sbjct: 187 LFSATYPDGIAKLSQQFLRNPKEVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLKHYRP 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 247 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 362

Query: 362 KLIEKKVDW-----LNGDLSS-LNPPLEKIDI 387
           + + + V+W     L  D +  L PP+E + I
Sbjct: 363 QALGRDVEWHPLAELKADGNEPLLPPMETLQI 394


>gi|126439983|ref|YP_001059500.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
 gi|126219476|gb|ABN82982.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
          Length = 514

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 151/390 (38%), Positives = 227/390 (58%), Gaps = 34/390 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 44  FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 103

Query: 63  L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99
                             + G  R R P+       L+L PTRELA QV      YGK+ 
Sbjct: 104 FAQLQKAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 163

Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L    ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRM
Sbjct: 164 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 223

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214
           LDMGFI  I  I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+     + S+ A
Sbjct: 224 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 283

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +T+ +           K  LL  LL+    +   IIF   K +   L   L   GF   A
Sbjct: 284 QTVHYV-----DDRDHKDRLLDHLLRDV-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 337

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIG
Sbjct: 338 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 397

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RTGRAGR G A +LV   +   +  IE+ +
Sbjct: 398 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 427


>gi|167739208|ref|ZP_02411982.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 14]
          Length = 460

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 151/390 (38%), Positives = 227/390 (58%), Gaps = 34/390 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 42  FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 101

Query: 63  L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99
                             + G  R R P+       L+L PTRELA QV      YGK+ 
Sbjct: 102 FAQLQKAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 161

Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L    ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRM
Sbjct: 162 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 221

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214
           LDMGFI  I  I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+     + S+ A
Sbjct: 222 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 281

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +T+ +           K  LL  LL+    +   IIF   K +   L   L   GF   A
Sbjct: 282 QTVHYV-----DDRDHKDRLLDHLLRDV-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 335

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIG
Sbjct: 336 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 395

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RTGRAGR G A +LV   +   +  IE+ +
Sbjct: 396 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 425


>gi|221215428|ref|ZP_03588392.1| dead/deah box helicase [Burkholderia multivorans CGD1]
 gi|221164612|gb|EED97094.1| dead/deah box helicase [Burkholderia multivorans CGD1]
          Length = 506

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 153/409 (37%), Positives = 233/409 (56%), Gaps = 36/409 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 32  FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 91

Query: 63  LE-----------------KGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99
                              +G  R R P+       L+L PTRELA QV      YGK+ 
Sbjct: 92  FAQLQKAQAQQPRAPREANQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 151

Query: 100 -NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L    ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRM
Sbjct: 152 KRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 211

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214
           LDMGFI  I+ I    P +RQT+LFSAT+  ++  ++   L++P+RIE+     + ++ A
Sbjct: 212 LDMGFIEDIETIVEATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIA 271

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +T+ +           K  LL  LL+    +   IIF   K +   L   L   GF   A
Sbjct: 272 QTVHYV-----DDRDHKDRLLDHLLRDA-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 325

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIG
Sbjct: 326 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 385

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381
           RTGRAGR G A +LV   +   +  IE+ +     V+ + G      PP
Sbjct: 386 RTGRAGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRKTPP 434


>gi|196230475|ref|ZP_03129337.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
 gi|196225405|gb|EDY19913.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
          Length = 591

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 147/367 (40%), Positives = 222/367 (60%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLSP+++ AV   G+ + +PIQ +TIP +L   DV G++QTG+GKTA+F +P +  
Sbjct: 6   FTELGLSPELLKAVAKMGFEEASPIQSETIPQLLTGADVVGLSQTGSGKTAAFAIPAI-- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLER 121
            E+    +R P+ LIL PTRELA QVA+   K          L I GG  ++ Q + L  
Sbjct: 64  -ERVDGNLRAPQVLILCPTRELAMQVAEEVAKLAFFKRGVRELPIYGGQSYDRQLRGLRD 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA ++I TPGR++DH  R  L ++ + ++++DEADRMLDMGF   I+ I    P  RQT+
Sbjct: 123 GAQIIIGTPGRVMDHLERKTLRLDQVGMIILDEADRMLDMGFRDDIETILGQAPAERQTV 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   + ++ + + + P  + +     T   I+  +         K  +L +L+  
Sbjct: 183 FFSATMPPAINQLVKKYTKEPVNVRIQAQEMTVPAIDQSYYEV--DRRSKLEVLCRLIDL 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           QD +K GIIFC  K  V  L   L+ +G+S   +HG+I Q  R ++++ F++   + +VA
Sbjct: 241 QD-IKYGIIFCATKMMVDELSDHLKARGYSSDKLHGDISQSMRERVVAKFRKRGFEFLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ D+  VFN+D+P  AE+Y+HRIGRTGRAGR G+A T VA  +I  +  I 
Sbjct: 300 TDVAARGLDVDDIEVVFNYDLPQDAEDYVHRIGRTGRAGRSGRAVTFVAGREIWKMQQII 359

Query: 362 KLIEKKV 368
           +  + KV
Sbjct: 360 RFTKGKV 366


>gi|83719456|ref|YP_442523.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
 gi|83653281|gb|ABC37344.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
          Length = 482

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 150/390 (38%), Positives = 227/390 (58%), Gaps = 34/390 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 14  FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 73

Query: 63  L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99
                             + G  R R P+       L+L PTRELA QV      YGK+ 
Sbjct: 74  FAQLQKAQAQQPRAPREAQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 133

Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L    ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRM
Sbjct: 134 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 193

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214
           LDMGFI  I  I +  P +RQT+LFSAT+  ++  ++   L++P+RIE+     + S+ A
Sbjct: 194 LDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 253

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +T+ +           K  LL  LL+    +   IIF   K +   L   L   GF   A
Sbjct: 254 QTVHYV-----DDRDHKDRLLDHLLRDT-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 307

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIG
Sbjct: 308 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 367

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RTGRAGR G A +LV   +   +  IE+ +
Sbjct: 368 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 397


>gi|67920440|ref|ZP_00513960.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Crocosphaera watsonii WH 8501]
 gi|67857924|gb|EAM53163.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Crocosphaera watsonii WH 8501]
          Length = 480

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 146/369 (39%), Positives = 224/369 (60%), Gaps = 5/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS   V  +   G+  PT IQ K IPL+L+ +D+ G +QTGTGKTA++ LP+L
Sbjct: 3   ISFENLGLSDARVNKLQRLGFESPTEIQEKAIPLILESNDILGQSQTGTGKTAAYSLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+   TLIL PTRELA QVA+  + +     L +  + GG   E Q + LE
Sbjct: 63  EQIDTKNPNVQ---TLILTPTRELAQQVAEALKDFSTERRLYILTVYGGQSIERQIRSLE 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++D   R KL+++ +   V+DEAD ML MGFI  ++ I    P TR T
Sbjct: 120 RGVQIVVGTPGRVIDLLERKKLVLDCLRWAVLDEADEMLSMGFIDDVKTILRKTPETRNT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM  E++ +   FL++P  + V    +    I+         +SK+ AL Q +L+
Sbjct: 180 ACFSATMPREIRDLVNQFLKSPVTVSVERKQAAPTHIDQHLYYVPRGWSKRKAL-QPILE 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D  ++ IIF   K+    L   L++ G SV   HGN+ Q  R +++  F++G I+L+V
Sbjct: 239 MEDP-ESAIIFVRTKQTASELTTRLQEIGHSVDEYHGNLSQSQRERLVYRFRDGKIKLVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++ HV N+D+P+ +E YIHRIGRTGRAG+ G A +L+   D + +  I
Sbjct: 298 ATDIAARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLIEPVDRRMVRQI 357

Query: 361 EKLIEKKVD 369
           E+ + +K++
Sbjct: 358 ERKLRQKLE 366


>gi|221198351|ref|ZP_03571397.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
 gi|221208290|ref|ZP_03581294.1| dead/deah box helicase [Burkholderia multivorans CGD2]
 gi|221171938|gb|EEE04381.1| dead/deah box helicase [Burkholderia multivorans CGD2]
 gi|221182283|gb|EEE14684.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
          Length = 506

 Score =  276 bits (706), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 153/409 (37%), Positives = 233/409 (56%), Gaps = 36/409 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 32  FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 91

Query: 63  LE-----------------KGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99
                              +G  R R P+       L+L PTRELA QV      YGK+ 
Sbjct: 92  FAQLQKAQAQQPRAPREANQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 151

Query: 100 -NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L    ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRM
Sbjct: 152 KRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 211

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214
           LDMGFI  I+ I    P +RQT+LFSAT+  ++  ++   L++P+RIE+     + ++ A
Sbjct: 212 LDMGFIEDIETIVEATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIA 271

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +T+ +           K  LL  LL+    +   IIF   K +   L   L   GF   A
Sbjct: 272 QTVHYV-----DDRDHKDRLLDHLLRDA-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 325

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIG
Sbjct: 326 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 385

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381
           RTGRAGR G A +LV   +   +  IE+ +     V+ + G      PP
Sbjct: 386 RTGRAGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRKTPP 434


>gi|315123425|ref|YP_004065431.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315017185|gb|ADT70522.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 433

 Score =  276 bits (706), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 160/420 (38%), Positives = 244/420 (58%), Gaps = 11/420 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F     +P+++ A+ +  Y   TPIQ   IP V +  DV   AQTGTGKTA+F LP++
Sbjct: 1   MNFKSFSFAPELIQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPII 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + E   +    P  L+L PTRELA Q+A+NF+ + K  +L V  L GG+    Q   L
Sbjct: 61  QKLFESDSSTTNAPSALVLAPTRELAEQIANNFKDFAKYTSLKVVSLFGGVNTAGQEIAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D+++ TPGR+LDH   G L +  ++ LV+DEADRMLDMGFI  +Q++       RQ
Sbjct: 121 KEGVDIVVATPGRLLDHIRLGNLSLAQVKHLVLDEADRMLDMGFINDMQSVIKSCADERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT    +++ +   L+ P+ + V+  +STA T++H  V    +  +K  LL +L+
Sbjct: 181 ILLFSATFPAAIKQFASKVLKQPEIVRVDQTNSTASTVQH--VVYPVEERRKQELLSELI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  +  ++F N K+    L   L   G      HG+  Q +R + L  FKEG ++++
Sbjct: 239 GKKN-WQQVLVFVNMKETADELVTELNLDGIPAAVCHGDKSQGNRRRALREFKEGKVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+++AARG+DI  +  V N D+P  AE+Y+HRIGRTGRAG  G+A + V++E+   +  
Sbjct: 298 VATEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGNQGQAISFVSREEENMLFE 357

Query: 360 IEKLIEKKVD--WLNG-DLSSLNPPLEKIDI--AQHNHARKNNPIPQKSTGFDRRKKNYS 414
           IE LI +K+   +L G ++S+    ++KI    A     R N P  Q +TG + R KN S
Sbjct: 358 IETLIGQKIKRVYLEGYEVSNREVLIDKIGKKPAHLRRTRANKPSGQ-ATG-EARAKNRS 415


>gi|163800381|ref|ZP_02194282.1| hypothetical protein 1103602000595_AND4_06859 [Vibrio sp. AND4]
 gi|159175824|gb|EDP60618.1| hypothetical protein AND4_06859 [Vibrio sp. AND4]
          Length = 619

 Score =  276 bits (706), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 223/370 (60%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL L+  ++ A+   G+V PTPIQ   IP +L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFRDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L+  +   R P+ ++L PTRELA QVA   +  GKN   L V  + GG     Q + L
Sbjct: 66  NKLDLDQ---RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA V++ TPGR+ D  NR +L ++ ++  V+DEAD ML+MGF+  +  I    P + Q
Sbjct: 123 KNGAHVIVGTPGRVQDLINRERLHLDEVKTFVLDEADEMLNMGFVDDVTAIMEHSPDSAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   L+ + E FL++P  ++V   + T + ++  F        +K   + +LL
Sbjct: 183 RVLFSATMPPMLKSICERFLRSPVTVDVAGKNHTVDKVQQQFWVVKG--VEKDEAMSRLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKKGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRINHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVD 369
           IE++ +  ++
Sbjct: 360 IERVTKSSME 369


>gi|256422981|ref|YP_003123634.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256037889|gb|ACU61433.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 444

 Score =  276 bits (706), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 151/373 (40%), Positives = 228/373 (61%), Gaps = 11/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L  +V+  +   GY   TP+Q K IP ++   D+   AQTGTGKTA+F+LP+L
Sbjct: 1   MYFDEFDLDDRVLDGIDAMGYTTATPVQEKVIPPIIAGKDILACAQTGTGKTAAFLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-----GGIPFEAQ 115
             L       R   +LI+ PTRELA Q+A   E  G +Y  +V+ +       G  F A+
Sbjct: 61  HRLITEPHDARKINSLIIVPTRELAVQIAQTLE--GMSYFTSVSSIAVYGGSNGALFAAE 118

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K L  G D++ICTPGR++ H N G + ++ ++ LV+DEADRMLDMGF   I  ITS +P
Sbjct: 119 KKALTSGVDIVICTPGRMIAHLNMGYVKLDAVKYLVLDEADRMLDMGFSDDIIRITSTLP 178

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSATM D+++K++   L  P+ I +       + ++  FV    Q   K  L+
Sbjct: 179 KERQNLLFSATMPDKIRKLALKILHQPEEINIAISKPPEKIVQEAFVVFEEQ---KTGLI 235

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +QLL  ++     IIFC++K+NV  L + L+K  FSV  IH +++Q  R ++L +FK   
Sbjct: 236 KQLLARKE-FGCIIIFCSRKQNVKQLTYELKKARFSVEEIHSDLEQDKREQVLMDFKNKK 294

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+ +RG+DI D+  V N+DVPN AE+YIHRIGRT RA   G A+T++++++ +
Sbjct: 295 LKMLVATDILSRGIDIEDIDLVINYDVPNDAEDYIHRIGRTARAATDGTAYTIISEKEQR 354

Query: 356 HIDAIEKLIEKKV 368
               IE+++ K V
Sbjct: 355 KFARIEEVLGKPV 367


>gi|119468751|ref|ZP_01611803.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family [Alteromonadales bacterium TW-7]
 gi|119447807|gb|EAW29073.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family [Alteromonadales bacterium TW-7]
          Length = 433

 Score =  276 bits (706), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 155/413 (37%), Positives = 242/413 (58%), Gaps = 8/413 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F     +P+++ A+ +  Y   TPIQ   IP V +  DV   AQTGTGKTA+F LP++
Sbjct: 1   MNFKSFSFAPEIIQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPVI 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++E   +    P  L+L PTRELA Q+A+N ++Y K+ +L V  L GG+    Q   L
Sbjct: 61  QKLIESDLSTTNAPTALVLAPTRELAEQIANNCKEYAKHTSLKVVSLFGGVNTAGQENAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D+++ TPGR+LDH   G L + N++ LV+DEADRMLDMGFI  +Q +       RQ
Sbjct: 121 KAGVDIVVATPGRLLDHIRLGNLSLANVKHLVLDEADRMLDMGFITDMQTVIKSCADDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT    +++ +   L+ P+ + V+  +STA T++H  V    +  +K  LL +L+
Sbjct: 181 ILLFSATFPAAIKQFASKVLKQPEIVRVDQTNSTASTVQH--VVYPVEERRKQELLSELI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  +  ++F N K     L   L   G      HG+  Q +R + L  FKEG ++++
Sbjct: 239 GKKN-WQQVLVFVNMKDTADELVKELNLDGIPATVCHGDKSQGNRRRALREFKEGKVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+++AARG+DI  +  V N D+P  AE+Y+HRIGRTGRAG  G+A + V++E+   +  
Sbjct: 298 VATEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGNQGQAISFVSREEENTLFE 357

Query: 360 IEKLIEKKVD--WLNG-DLSSLNPPLEKIDIA-QHNHARKNNPIPQKSTGFDR 408
           IE LI +K+   +L G ++S+    ++KI     H    ++N +  ++TG  R
Sbjct: 358 IEALIGQKIKRVYLEGYEVSNREVLIDKIGKKPAHLRRTRSNKLSGQATGEAR 410


>gi|261377495|ref|ZP_05982068.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC
           14685]
 gi|269146228|gb|EEZ72646.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC
           14685]
          Length = 473

 Score =  276 bits (706), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 219/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64

Query: 63  LEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFTRLEVLILDEADRMLDMGFIDDIETIVEATPADRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    ++P+ IEV       +  E        ++  K  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 361 IEKYIGRKL 369


>gi|167894911|ref|ZP_02482313.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 7894]
          Length = 483

 Score =  276 bits (706), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 151/390 (38%), Positives = 227/390 (58%), Gaps = 34/390 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 45  FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 104

Query: 63  L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99
                             + G  R R P+       L+L PTRELA QV      YGK+ 
Sbjct: 105 FAQLQKAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 164

Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L    ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRM
Sbjct: 165 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 224

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214
           LDMGFI  I  I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+     + S+ A
Sbjct: 225 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 284

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +T+ +           K  LL  LL+    +   IIF   K +   L   L   GF   A
Sbjct: 285 QTVHYV-----DDRDHKDRLLDHLLRDV-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 338

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIG
Sbjct: 339 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 398

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RTGRAGR G A +LV   +   +  IE+ +
Sbjct: 399 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 428


>gi|254252033|ref|ZP_04945351.1| hypothetical protein BDAG_01244 [Burkholderia dolosa AUO158]
 gi|124894642|gb|EAY68522.1| hypothetical protein BDAG_01244 [Burkholderia dolosa AUO158]
          Length = 523

 Score =  276 bits (706), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 149/390 (38%), Positives = 228/390 (58%), Gaps = 34/390 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 48  FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 107

Query: 63  LEK-----------------GRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99
             +                 G  R R P+       L+L PTRELA QV      YGK+ 
Sbjct: 108 FAQLQKAHAQQPRAPREAGQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 167

Query: 100 -NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L    ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRM
Sbjct: 168 KRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 227

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214
           LDMGFI  I+ I +  P +RQT+LFSAT+  ++  ++   L++P+RIE+     + ++ A
Sbjct: 228 LDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIA 287

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +T+ +           K  LL  LL+    +   IIF   K +   L   L   GF   A
Sbjct: 288 QTVHYV-----DDRDHKDRLLDHLLRDT-ALDQAIIFTATKIDADQLAGRLADAGFESAA 341

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIG
Sbjct: 342 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 401

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RTGRAGR G A +LV   +   +  IE+ +
Sbjct: 402 RTGRAGRSGIAVSLVHHAEQGALKRIERFV 431


>gi|225174307|ref|ZP_03728306.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
 gi|225170092|gb|EEG78887.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
          Length = 424

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 158/430 (36%), Positives = 241/430 (56%), Gaps = 27/430 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA LG+  ++   + + G   PTP+Q + IP +L   D+   AQTGTGKT +F+LP   
Sbjct: 4   DFASLGIRGELHKTLAELGISVPTPVQTQAIPALLSGKDIVAQAQTGTGKTLAFLLP--- 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ILEK +      + LI+ PTRELA Q+     K           + GG   E Q KKL+ 
Sbjct: 61  ILEKVKVDKPFIQALIITPTRELALQITAELNKLASTVGANSLAVYGGQDVERQIKKLKG 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH  RG +  + +++LV+DEAD+ML MGF+P +  I       RQT+
Sbjct: 121 AIHIVVGTPGRILDHMRRGTISFSGVQMLVLDEADQMLHMGFLPEVDQIIGQTSPKRQTM 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++ +++ +++ P  I++ +   T + I    V+T    +K+  L + + Q 
Sbjct: 181 LFSATMPGSIRNLAKRYMKTPVDIKIESKKVTLDEISQLVVST-TDRAKQDTLFKLIDQY 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   +IFC  K+    L  +L + G+S   +HG++ Q  R +++  F++  IQL+VA
Sbjct: 240 RPFL--ALIFCRTKRRAAKLNQALLEHGYSADELHGDLSQAKREQVMKRFRQAHIQLLVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HVFN+D+P   E+YIHRIGRTGRAG  G A TLVA +D   + AIE
Sbjct: 298 TDVAARGLDVEGITHVFNYDIPQDLESYIHRIGRTGRAGEKGLALTLVAPKDSPMLQAIE 357

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ-KSHI 420
           K +   +D LN               A  N  ++    P++     + KK+ SSQ + H 
Sbjct: 358 KGLGYSIDNLN---------------APKNSEKQRRIQPER-----QDKKSVSSQNRQHQ 397

Query: 421 PLKESEKISK 430
           P K S++  K
Sbjct: 398 PSKFSKRTGK 407


>gi|15677233|ref|NP_274386.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
 gi|7226614|gb|AAF41742.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
 gi|308389485|gb|ADO31805.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha710]
 gi|316984178|gb|EFV63156.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           H44/76]
 gi|325130443|gb|EGC53205.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           OX99.30304]
 gi|325136474|gb|EGC59080.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M0579]
 gi|325140412|gb|EGC62933.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           CU385]
 gi|325200011|gb|ADY95466.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           H44/76]
 gi|325201923|gb|ADY97377.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240149]
 gi|325208326|gb|ADZ03778.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           NZ-05/33]
          Length = 462

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 219/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQK 64

Query: 63  LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    ++P+ IEV       +  E        ++  K  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 361 IEKYINRKL 369


>gi|261392357|emb|CAX49897.1| putative ATP-dependent RNA helicase [Neisseria meningitidis 8013]
 gi|325204361|gb|ADY99814.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240355]
          Length = 462

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 219/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64

Query: 63  LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    ++P+ IEV       +  E        ++  K  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 361 IEKYINRKL 369


>gi|254805163|ref|YP_003083384.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha14]
 gi|254668705|emb|CBA06474.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha14]
          Length = 462

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 219/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64

Query: 63  LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFGRLEVLILDEADRMLDMGFIDDIETIVEATPTDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    ++P+ IEV       +  E        ++  K  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 361 IEKYINRKL 369


>gi|326204124|ref|ZP_08193984.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325985635|gb|EGD46471.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 564

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 146/382 (38%), Positives = 236/382 (61%), Gaps = 14/382 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL LS +V  A+ D G+ + TPIQ ++IP +L+ +D+ G AQTGTGKT +F +P +
Sbjct: 4   LSFKDLTLSDEVQHAIADMGFEEATPIQSQSIPYILEGNDLIGQAQTGTGKTCAFGIPAV 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
              EK  + +   + L+L PTRELA Q  +      K  + + +  + GG P + Q   L
Sbjct: 64  ---EKIDSHIDSIQVLVLCPTRELAIQSCEELRNVLKYKDGIRILPVYGGQPIDRQIMAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   ++I TPGR++DH  R  L + +++++V+DEAD ML+MGF   I  I   VP  RQ
Sbjct: 121 KKRPQIIIGTPGRVMDHMRRKTLKLESLKMIVLDEADEMLNMGFREDIDTILEKVPEDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  E+ ++++ + ++P  I++     T  +IE  ++    + S K  +L +L+
Sbjct: 181 TILFSATMPKEILELTKKYQKDPVHIKIAHKELTVPSIEQYYLE--VKESAKLEVLSRLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + D +K  ++FCN KK V  L  SL+ +GFS  A+HG++ Q  R K++S F++G   ++
Sbjct: 239 DTND-IKLSLVFCNTKKRVDELTASLQSRGFSAEALHGDMRQEHRDKVMSLFRKGNFDIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+ DV  VFN+D+PN  E Y+HRIGRTGRAGR GKAFT ++  ++  +  
Sbjct: 298 IATDVAARGIDVDDVEAVFNYDLPNDEEYYVHRIGRTGRAGRTGKAFTFISGREMYKLRD 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPP 381
           I++       +    + ++ PP
Sbjct: 358 IQR-------YTKSTIVAMKPP 372


>gi|289208228|ref|YP_003460294.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix]
 gi|288943859|gb|ADC71558.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix]
          Length = 627

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 136/367 (37%), Positives = 217/367 (59%), Gaps = 6/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  +  A+L  G+  PTP+Q   IP +L   DV G AQTGTGKT +F LP++  
Sbjct: 7   FAELGLSESLARALLQLGFTTPTPVQAACIPALLAGDDVLGEAQTGTGKTGAFGLPLIDS 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++  + RV+    LIL PTRELA QVA   E +  + + L +  + GG P   Q + L  
Sbjct: 67  IDPAQRRVQ---ALILAPTRELAGQVATALEGFAASIDGLEILPVYGGQPMGVQIRALRD 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  RG L ++ + ++V+DEAD ML MGF+  I+ I    P  RQT 
Sbjct: 124 GAQVVVGTPGRVVDHIKRGTLTLDALRMVVLDEADEMLRMGFVEEIEWILEQTPAERQTT 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +++++   ++ P+ I +   +     I+  +     ++  K   L ++++ 
Sbjct: 184 LFSATMPAPIRRIAHRHMREPQEIRIGAGNEAGTDIDQSYCLVDQRH--KTEALGRMIEV 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   I+F   K     +  +L  QG     ++G+++Q  R +++++ ++G + ++VA
Sbjct: 242 EAGLDAAIVFARTKAATAEIAEALNAQGVQSSPLNGDMEQGERERVVADLRDGRLDVIVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+P + HVFN+D P  AE Y+HRIGRTGRAGR G+A   +     + +  IE
Sbjct: 302 TDVAARGIDVPRITHVFNYDAPGDAEVYVHRIGRTGRAGRKGRAILFLEPRKRRMLRDIE 361

Query: 362 KLIEKKV 368
           +L  K V
Sbjct: 362 RLTGKPV 368


>gi|254674247|emb|CBA10031.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha275]
          Length = 462

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 219/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64

Query: 63  LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    ++P+ IEV       +  E        ++  K  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 361 IEKYINRKL 369


>gi|254432488|ref|ZP_05046191.1| cold-shock deAd box protein a [Cyanobium sp. PCC 7001]
 gi|197626941|gb|EDY39500.1| cold-shock deAd box protein a [Cyanobium sp. PCC 7001]
          Length = 610

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 141/361 (39%), Positives = 217/361 (60%), Gaps = 7/361 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P+++ A+   GY +P+PIQ   IP ++   D+ G AQTGTGKTA+F LP+L  L+   A 
Sbjct: 58  PEILEALAAIGYSEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLAGLD---AE 114

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLIC 128
            R P+ L+L PTRELA QVA++F  Y      +    + GG  F  Q   L RGA V++ 
Sbjct: 115 QRKPQVLVLAPTRELALQVAESFNSYAAQLPQVRTVAVYGGADFRDQIHHLRRGAQVVVG 174

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR++DH  +G L ++ +  LV+DEAD ML MGFI  ++ +   +P  RQ +LFSATM 
Sbjct: 175 TPGRVMDHMRQGTLDLSELRSLVLDEADEMLRMGFIDDVEWVLGQLPEQRQVVLFSATMP 234

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
            E++++S+ +L  P  I + T ++ A  I   F+   A    K A L+++L+S+ T +  
Sbjct: 235 AEIRRISQQYLNGPAEITIRTKAADASRIRQRFLTVPAPL--KLAALERVLESE-TSEGV 291

Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           IIF   K   + +  SLE  G+ V  ++G++ Q  R + +   K G + ++VA+D+AARG
Sbjct: 292 IIFARTKAITLTVAESLEAHGYDVAVLNGDVPQAQRERTIERLKNGQVDVLVATDVAARG 351

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           LD+  +G V N+D+P   E Y+HRIGRTGRAGR G+A   +   + + +  +E+   K +
Sbjct: 352 LDVERIGLVINYDIPFDGEAYVHRIGRTGRAGRSGEAILFLTPRERRFLGGLERAAGKPI 411

Query: 369 D 369
           +
Sbjct: 412 E 412


>gi|167581446|ref|ZP_02374320.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
          Length = 517

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 150/390 (38%), Positives = 227/390 (58%), Gaps = 34/390 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 49  FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 108

Query: 63  L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99
                             + G  R R P+       L+L PTRELA QV      YGK+ 
Sbjct: 109 FAQLQKAQAQQPRAPREAQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 168

Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L    ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRM
Sbjct: 169 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 228

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214
           LDMGFI  I  I +  P +RQT+LFSAT+  ++  ++   L++P+RIE+     + S+ A
Sbjct: 229 LDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 288

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +T+ +           K  LL  LL+    +   IIF   K +   L   L   GF   A
Sbjct: 289 QTVHYV-----DDRDHKDRLLDHLLRDT-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 342

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIG
Sbjct: 343 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 402

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RTGRAGR G A +LV   +   +  IE+ +
Sbjct: 403 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 432


>gi|15678231|ref|NP_275346.1| EIF-4a family ATP-dependent RNA helicase [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2621248|gb|AAB84709.1| ATP-dependent RNA helicase, eIF-4A family [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 425

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 148/372 (39%), Positives = 225/372 (60%), Gaps = 9/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F++  +S  +  A+ D G+   TPIQ  T+P+ L   DV G AQTGTGKTA+F +P+L
Sbjct: 4   LEFSEFDISGDINRALDDMGFESTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFAIPVL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE  R    +P+ LI+ PTREL  QV++  ++ GK   + V  + GG     Q  +L 
Sbjct: 64  ENLEAER----VPQALIICPTRELCLQVSEEIKRIGKYMKVKVLAVYGGQSIGNQIAQLR 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG + +  I  +V+DEAD ML+MGFI  I+ I S VP  RQT
Sbjct: 120 RGVHVIVATPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPERRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT++  + +++  +++NP+ + V    S    I+  +  T  +   K  LL  +L 
Sbjct: 180 MLFSATVSKPILRIARKYMRNPQVMRVEKKHSPK--IDEFYFKTREE--DKVELLDWILS 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S + ++ G+IFCN K+ V  L   L + G+S   IHG++ Q  R +++  F+ G   L+V
Sbjct: 236 SNN-IRMGLIFCNTKRRVQRLRRQLNRMGYSADEIHGDLSQSKRERVMERFRRGDFSLLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ +PDV  V N+D+P   E Y+HRIGRTGRAG  GK+FTLV   ++  +  I
Sbjct: 295 ATDVAARGIHVPDVEAVVNYDLPFENEYYVHRIGRTGRAGSSGKSFTLVVGSEVHRLRRI 354

Query: 361 EKLIEKKVDWLN 372
           +    K++   N
Sbjct: 355 QSFTGKRIKQSN 366


>gi|53719796|ref|YP_108782.1| putative ATP-dependent RNA helicase [Burkholderia pseudomallei
           K96243]
 gi|53724110|ref|YP_103224.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
 gi|67639288|ref|ZP_00438162.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
 gi|121599488|ref|YP_993402.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
 gi|124385746|ref|YP_001029162.1| putative ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC
           10229]
 gi|126448376|ref|YP_001080910.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
 gi|166999673|ref|ZP_02265508.1| DEAD/DEAH box helicase [Burkholderia mallei PRL-20]
 gi|167903298|ref|ZP_02490503.1| ATP-dependent RNA helicase [Burkholderia pseudomallei NCTC 13177]
 gi|217421948|ref|ZP_03453452.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
 gi|254177947|ref|ZP_04884602.1| DEAD/DEAH box helicase [Burkholderia mallei ATCC 10399]
 gi|254200174|ref|ZP_04906540.1| DEAD/DEAH box helicase [Burkholderia mallei FMH]
 gi|254206512|ref|ZP_04912864.1| DEAD/DEAH box helicase [Burkholderia mallei JHU]
 gi|254257950|ref|ZP_04949004.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
 gi|254297179|ref|ZP_04964632.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 406e]
 gi|254358076|ref|ZP_04974349.1| DEAD/DEAH box helicase [Burkholderia mallei 2002721280]
 gi|52210210|emb|CAH36189.1| putative ATP-dependent RNA helicase [Burkholderia pseudomallei
           K96243]
 gi|52427533|gb|AAU48126.1| ATP-dependent RNA helicase RhlE, putative [Burkholderia mallei ATCC
           23344]
 gi|121228298|gb|ABM50816.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
 gi|124293766|gb|ABN03035.1| putative ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC
           10229]
 gi|126241246|gb|ABO04339.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
 gi|147749770|gb|EDK56844.1| DEAD/DEAH box helicase [Burkholderia mallei FMH]
 gi|147753955|gb|EDK61020.1| DEAD/DEAH box helicase [Burkholderia mallei JHU]
 gi|148027203|gb|EDK85224.1| DEAD/DEAH box helicase [Burkholderia mallei 2002721280]
 gi|157807478|gb|EDO84648.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 406e]
 gi|160698986|gb|EDP88956.1| DEAD/DEAH box helicase [Burkholderia mallei ATCC 10399]
 gi|217395690|gb|EEC35708.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
 gi|238519823|gb|EEP83289.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
 gi|243064323|gb|EES46509.1| DEAD/DEAH box helicase [Burkholderia mallei PRL-20]
 gi|254216639|gb|EET06023.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
          Length = 516

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 151/390 (38%), Positives = 227/390 (58%), Gaps = 34/390 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 45  FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 104

Query: 63  L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99
                             + G  R R P+       L+L PTRELA QV      YGK+ 
Sbjct: 105 FAQLQKAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 164

Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L    ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRM
Sbjct: 165 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 224

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214
           LDMGFI  I  I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+     + S+ A
Sbjct: 225 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 284

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +T+ +           K  LL  LL+    +   IIF   K +   L   L   GF   A
Sbjct: 285 QTVHYV-----DDRDHKDRLLDHLLRDV-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 338

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIG
Sbjct: 339 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 398

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RTGRAGR G A +LV   +   +  IE+ +
Sbjct: 399 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 428


>gi|269956525|ref|YP_003326314.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305206|gb|ACZ30756.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 712

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 149/402 (37%), Positives = 224/402 (55%), Gaps = 12/402 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   +  AV D G+  P+ IQ + IP +L   D+ G+AQTGTGKTA+F LP+L  
Sbjct: 51  FDTLGLPATLEAAVADLGFTTPSAIQAQAIPALLGGRDITGVAQTGTGKTAAFGLPLLAS 110

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +E  R      + L+L PTRELA QVA+  E +  +  ++ V  + GG P+  Q + L  
Sbjct: 111 VEAHRGTRPTVQALVLTPTRELAMQVAEAIESFASHLPDVRVLSVYGGSPYVPQQRALRD 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L++++   LV+DEAD ML MGF   ++ I S  P  RQ  
Sbjct: 171 GVHVVVGTPGRVIDHLERGGLVLDDARFLVLDEADEMLRMGFAEDVEKIFSYAPTQRQVA 230

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++ +++  L +P  I V   SST  ++   +      +  K   L ++L +
Sbjct: 231 LFSATMPPAIRAIADTHLNDPVEIAVARQSSTVASVHQGYA--IVPFRHKVGALTRILAT 288

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D   + I+F   +     +  +L ++G S   I G++ Q+ R KI+   + G + ++VA
Sbjct: 289 SDADAS-IVFTRTRSAAEEVGAALIEKGISAATISGDVAQKEREKIVERLRSGALDVLVA 347

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V NFD+P  AE Y+HRIGRTGRAGR G+A + V   +   +  IE
Sbjct: 348 TDVAARGLDVDRIGLVVNFDIPREAEAYVHRIGRTGRAGRTGRAVSFVTPHERGKLKFIE 407

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
             I  KV     D+ S        D++ H  AR  +  P ++
Sbjct: 408 NTI--KVSLEEIDIPSPR------DVSAHRAARLLDSAPART 441


>gi|257138731|ref|ZP_05586993.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
          Length = 515

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 150/390 (38%), Positives = 227/390 (58%), Gaps = 34/390 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 47  FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 106

Query: 63  L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99
                             + G  R R P+       L+L PTRELA QV      YGK+ 
Sbjct: 107 FAQLQKAQAQQPRAPREAQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 166

Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L    ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRM
Sbjct: 167 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 226

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214
           LDMGFI  I  I +  P +RQT+LFSAT+  ++  ++   L++P+RIE+     + S+ A
Sbjct: 227 LDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 286

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +T+ +           K  LL  LL+    +   IIF   K +   L   L   GF   A
Sbjct: 287 QTVHYV-----DDRDHKDRLLDHLLRDT-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 340

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIG
Sbjct: 341 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 400

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RTGRAGR G A +LV   +   +  IE+ +
Sbjct: 401 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 430


>gi|167619557|ref|ZP_02388188.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
          Length = 454

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 150/390 (38%), Positives = 227/390 (58%), Gaps = 34/390 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 47  FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 106

Query: 63  L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99
                             + G  R R P+       L+L PTRELA QV      YGK+ 
Sbjct: 107 FAQLQKAQAQQPRAPREAQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 166

Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L    ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRM
Sbjct: 167 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 226

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214
           LDMGFI  I  I +  P +RQT+LFSAT+  ++  ++   L++P+RIE+     + S+ A
Sbjct: 227 LDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 286

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +T+ +           K  LL  LL+    +   IIF   K +   L   L   GF   A
Sbjct: 287 QTVHYV-----DDRDHKDRLLDHLLRDT-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 340

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIG
Sbjct: 341 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 400

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RTGRAGR G A +LV   +   +  IE+ +
Sbjct: 401 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 430


>gi|124485198|ref|YP_001029814.1| hypothetical protein Mlab_0371 [Methanocorpusculum labreanum Z]
 gi|124362739|gb|ABN06547.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum
           Z]
          Length = 656

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 145/366 (39%), Positives = 227/366 (62%), Gaps = 17/366 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  +S +++ A+ D G+ +PTPIQ   IP +L   DV G AQTGTGKTA+F +P++  
Sbjct: 7   FAEFAISEELLQAIGDMGFEEPTPIQAMAIPQILDGKDVTGQAQTGTGKTAAFGIPIIER 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFE---KYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+     V+    L+L PTRELA Q A+ F    KY K  N  V  + GG P E Q + L
Sbjct: 67  LDPDNKNVQ---ALVLSPTRELAIQTAEEFSRLMKYKKGLN--VVPIYGGQPIERQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    V+I TPGR++DH  RG L ++++ + ++DEAD+MLDMGF   I++I    P  RQ
Sbjct: 122 KGTVQVVIGTPGRVIDHIKRGTLHLDSVTMFILDEADQMLDMGFREDIEDIFRDTPKDRQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   +  ++  F ++P+ +++     T   IE  ++       ++   L+ L 
Sbjct: 182 TILFSATMPQPILDITRRFQRDPQFVKITRKELTVPQIEQTYIEV-----RERDKLEALC 236

Query: 240 QSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++ D M N    ++FCN K+ V +L   ++ +G+ V A+HG++ Q+ R ++++ F+ G+I
Sbjct: 237 RTLD-MNNPELALVFCNTKRTVDDLMSRMQARGYFVEALHGDMKQQQRDRVMARFRSGSI 295

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARG+D+ DV  VFN+DVP   E Y+HRIGRT RAGR GK+ T VA  +I  
Sbjct: 296 DVLIATDVAARGIDVDDVDIVFNYDVPQDVEYYVHRIGRTARAGRTGKSVTFVAPREIYK 355

Query: 357 IDAIEK 362
           +  I++
Sbjct: 356 LRDIQR 361


>gi|289677204|ref|ZP_06498094.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Pseudomonas syringae pv. syringae FF5]
          Length = 379

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 136/340 (40%), Positives = 217/340 (63%), Gaps = 7/340 (2%)

Query: 30  KTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVA 89
           ++IP+++  HD+ G AQTGTGKTA+F LP+L  ++  +   R P+ LIL PTRELA QVA
Sbjct: 2   QSIPIIMAGHDMIGQAQTGTGKTAAFALPILHRIDPSK---REPQALILAPTRELALQVA 58

Query: 90  DNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIE 148
             FE Y K    +TV  + GG P   Q K +  GA +++ TPGR+ DH  R + ++  + 
Sbjct: 59  TAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQIVVATPGRLCDHLRRDEKVLATVN 118

Query: 149 ILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN 208
            LV+DEAD ML +GF+  ++ I   +P T+QT+LFSAT+   ++ ++E  L++PK +++ 
Sbjct: 119 HLVLDEADEMLKLGFMDDLEVIFKAMPETKQTVLFSATLPQSIRAIAERHLRDPKHVKIQ 178

Query: 209 TPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
           T + T   IE   +  +A   +K + +  LL+ +D     I+F   K+  ++L  +LE +
Sbjct: 179 TKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEVED-FDALIMFVRTKQATLDLASALEAK 235

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G+   A++G+I Q  R +++ + K+G + ++VA+D+AARGLD+P + HVFN D+P   E+
Sbjct: 236 GYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAARGLDVPRITHVFNVDMPYDPES 295

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           Y+HRIGRTGRAGR G+A  LV   + + +  IE++  +KV
Sbjct: 296 YVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQKV 335


>gi|259418826|ref|ZP_05742743.1| putative ATP-dependent RNA helicase RhlE [Silicibacter sp.
           TrichCH4B]
 gi|259345048|gb|EEW56902.1| putative ATP-dependent RNA helicase RhlE [Silicibacter sp.
           TrichCH4B]
          Length = 442

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 150/368 (40%), Positives = 224/368 (60%), Gaps = 11/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +F+ + L PK +   ++A G+  PTPIQ + IP  L   DV G+AQTGTGKTA+F +P++
Sbjct: 3   EFSTMDL-PKHLHTRMEAMGFNTPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLV 61

Query: 61  T-ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +LE G +      R LIL PTRELA Q+A+      +   L   L++GG+    Q  +
Sbjct: 62  AQMLEYGQKPAAGTVRGLILAPTRELANQIAETLRGLTEGSPLKTGLVVGGVSINPQINR 121

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+LD  +R  L + + + LV+DEAD+MLD+GFI  ++ I +L+P  R
Sbjct: 122 LSRGTDILVATPGRLLDILDRKALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEKR 181

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCALLQ 236
           QT+LFSATM  ++ +++  +L++P RIEV  P   A  +     F+A   + S       
Sbjct: 182 QTMLFSATMPKQMNEIANAYLKSPVRIEVTPPGKPATKVTQSVHFIAKAEKLSLLKE--- 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L ++   +  ++F   K  +  L   L+K GF   AIHGN  Q  R + L  FK G I
Sbjct: 239 --LLAKHDGERTLVFGRTKHGMEKLMKVLDKAGFKAAAIHGNKSQGQRERALKAFKSGEI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLDIPDV +V+N+++PN  + Y+HRIGRT RAG+ G+A    A ++I  
Sbjct: 297 TVLVATDVAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEIGD 356

Query: 357 IDAIEKLI 364
           + AI+K +
Sbjct: 357 LKAIQKTM 364


>gi|145640153|ref|ZP_01795737.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|145274739|gb|EDK14601.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.4-21]
          Length = 613

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 145/369 (39%), Positives = 231/369 (62%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L  
Sbjct: 7   FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQ 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121
           ++      + P+ L++ PTRELA QVAD  E++ K  + T +  L GG  ++ Q + L++
Sbjct: 67  IDPSE---KHPQMLVMAPTRELAIQVADACEQFVKYAHGTRIVTLYGGQRYDIQLRALKQ 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   QT 
Sbjct: 124 GAQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240
           LFSATM + ++++++ F+ +PK +++   +  A  I+  C+   Y    +K   L + L+
Sbjct: 184 LFSATMPEPIRRITKRFMNDPKEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++V
Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 361 EKLIEKKVD 369
           E L++K ++
Sbjct: 360 EHLMKKGIN 368


>gi|145637208|ref|ZP_01792870.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
 gi|145269653|gb|EDK09594.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
          Length = 613

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 145/369 (39%), Positives = 231/369 (62%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L  
Sbjct: 7   FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQ 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121
           ++      + P+ L++ PTRELA QVAD  E++ K  + T +  L GG  ++ Q + L++
Sbjct: 67  IDPSE---KHPQMLVMAPTRELAIQVADACEQFVKYAHGTRIVTLYGGQRYDIQLRALKQ 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   QT 
Sbjct: 124 GAQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240
           LFSATM + ++++++ F+ +PK +++   +  A  I+  C+   Y    +K   L + L+
Sbjct: 184 LFSATMPEPIRRITKRFMNDPKEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++V
Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 361 EKLIEKKVD 369
           E L++K ++
Sbjct: 360 EHLMKKGIN 368


>gi|282880318|ref|ZP_06289032.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305820|gb|EFA97866.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           timonensis CRIS 5C-B1]
          Length = 583

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 159/441 (36%), Positives = 257/441 (58%), Gaps = 20/441 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  +   TP+Q K IP +L+  DV G+AQTGTGKTA+++LP+L
Sbjct: 1   MKFEELPLNNNVLDALYDMHFDTCTPVQEKCIPGILKGRDVLGVAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL----TVALLIG--GIPFEA 114
           + ++           LI+ PTRELA Q+    + +G  Y L    +VA+  G  G  ++ 
Sbjct: 61  SKIDSNNYPDNAINCLIMSPTRELAQQIDQAMQGFG--YYLQGVSSVAVYGGNDGNRYDQ 118

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           + K L  GADV+I TPGR++ H N G + M+ I   V+DEADRMLDMGF   I +I   +
Sbjct: 119 EVKSLRLGADVVIATPGRLISHINMGNIDMSKISFFVLDEADRMLDMGFADDIMSIAKGL 178

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P T QT++FSATM D++  ++   L+NP  I++   S  AE I+ C    Y   ++K  +
Sbjct: 179 PKTCQTIMFSATMPDKINDLARTLLKNPVEIKLAV-SKPAEKIKQCAYICYE--AQKLKI 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           ++ + +  D +K  I+FC  K  V  +  +L +   +   +H +++Q  R +++ NFK G
Sbjct: 236 IEDIFKKGD-LKRVIVFCGSKLKVKQVAAALHRMNVNCSEMHSDLEQAQRDEVMLNFKSG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+ ARG+DI D+  V N+DVPN AE+Y+HRIGRT RA R G+A TLVA++D 
Sbjct: 295 QLDVLVATDIVARGIDIDDISMVINYDVPNDAEDYVHRIGRTARADRDGQAITLVAQDDT 354

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
              + IEK + K+V+        +  P    +  ++   R+      K+    R+ +N +
Sbjct: 355 YLFEQIEKFLGKEVE-------KIQLPEGIGEAPEYTSGRRPQRRGTKAKSIRRKDRNQT 407

Query: 415 SQKSHIPLKESEKISKLQQDI 435
           + K H P +++++ ++  Q +
Sbjct: 408 AHK-HKPRRQNDQQNETSQTV 427


>gi|224112054|ref|XP_002316069.1| predicted protein [Populus trichocarpa]
 gi|222865109|gb|EEF02240.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 225/369 (60%), Gaps = 8/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G   +++  +  AG+V PTPIQ +T P+ LQ  D+  IA+TG+GKT  +++P  
Sbjct: 148 MTFEATGFPSEILRDIHSAGFVSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAF 207

Query: 61  TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L++ R   +  P  L+L PTRELA Q+ D   K+G++  ++   L GG P   Q K+L
Sbjct: 208 ILLQQRRNNAQNGPTVLVLAPTRELATQIQDEVMKFGRSSRVSCTCLYGGAPKIPQLKEL 267

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGAD+++ TPGR+ D     ++    + +LV+DEADRMLDMGF P I+ I + +P  RQ
Sbjct: 268 ERGADIVVATPGRLNDILEMKRIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPQRQ 327

Query: 180 TLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           TL+F+AT   E++K++ + L +P ++    V+  S+     ++  V    +  ++   L+
Sbjct: 328 TLMFTATWPKEVRKIASDLLVHPVQVNIGSVDVLSANKSITQYVEVVPQMEKDRR---LE 384

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q+L++Q+     IIFC+ K+    L  S+ +  F   AIHG+  Q  R   L+ F+ G  
Sbjct: 385 QILRTQERGSKAIIFCSTKRLCDQLARSIGRN-FGAAAIHGDKSQGERDWALNQFRSGKS 443

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLDI D+  V N+D P+  E+Y+HRIGRTGRAG  G ++T  +++D K+
Sbjct: 444 PILVATDVAARGLDIKDIRIVINYDFPSGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKY 503

Query: 357 IDAIEKLIE 365
              + KL+E
Sbjct: 504 AADLVKLLE 512


>gi|121635074|ref|YP_975319.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
 gi|120866780|emb|CAM10533.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
 gi|325132439|gb|EGC55132.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M6190]
 gi|325134396|gb|EGC57041.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M13399]
 gi|325138213|gb|EGC60782.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           ES14902]
 gi|325144497|gb|EGC66796.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240013]
 gi|325205865|gb|ADZ01318.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M04-240196]
          Length = 462

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 219/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64

Query: 63  LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPTDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    ++P+ IEV       +  E        ++  K  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 361 IEKYINRKL 369


>gi|331005516|ref|ZP_08328893.1| ATP-dependent RNA helicase [gamma proteobacterium IMCC1989]
 gi|330420663|gb|EGG94952.1| ATP-dependent RNA helicase [gamma proteobacterium IMCC1989]
          Length = 410

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 150/375 (40%), Positives = 228/375 (60%), Gaps = 6/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+ L  SP++  A+   GY K TPIQ + I    +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MNFSSLDFSPEIQKAITGCGYEKMTPIQEQAIVPARRGRDVLACAQTGTGKTAAFALPIL 60

Query: 61  T-ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             +++K R    V  PR LIL PTRELA Q+A+    Y K+   T+    GG+    Q  
Sbjct: 61  QQMIDKSRKSEEVNTPRALILTPTRELAEQLANTIGAYAKHLPFTIVAAYGGVKISKQAA 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           K     D+LI TPGR+L+   +    + N+E +V+DEADRMLDMGF+  +Q +       
Sbjct: 121 KFSSDVDILIATPGRLLELVTQCHTHLANVEFVVLDEADRMLDMGFVNDVQTLLKGTAKN 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT++  + ++S   L+N   I V   +STA+TIEH  +    +  +K AL  +
Sbjct: 181 RQCLLFSATLSAGVNELSHKLLKNHLEIRVTKANSTADTIEH--IVYPIEEKRKIALFNE 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+  +  +  ++F + K    +L  SL++        HG+  Q +R + L++FK   IQ
Sbjct: 239 LLEEYNWYQV-LVFTSTKGQADSLLASLKENKIPAAICHGDKTQGARRRALADFKSAKIQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+++AARGLDI  + +V N+++P  AE+Y+HRIGR GRAG  G A +LV++E+ +++
Sbjct: 298 VLIATEVAARGLDIQGLEYVVNYNLPFLAEDYVHRIGRAGRAGNKGYAISLVSREEERNL 357

Query: 358 DAIEKLIEKKVDWLN 372
           DAI++LI +KV  +N
Sbjct: 358 DAIQRLIGQKVKRIN 372


>gi|304414099|ref|ZP_07395467.1| DEAD-box RNA helicase [Candidatus Regiella insecticola LSR1]
 gi|304283313|gb|EFL91709.1| DEAD-box RNA helicase [Candidatus Regiella insecticola LSR1]
          Length = 635

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 150/381 (39%), Positives = 231/381 (60%), Gaps = 14/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ A+ + GY KP+PIQ++ IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 16  FTNLGLSDPILSALTNLGYKKPSPIQLECIPHLLNGCDVLGMAQTGSGKTAAFGLPLLHN 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +   +A ++ P+ L+L PTRELA QVA+    F KY K  N  V  L GG  ++ Q + L
Sbjct: 76  I---KAEIKSPQILVLAPTRELAVQVAEALTEFSKYIKGVN--VVALYGGQRYDLQLRAL 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  V++ TPGR+LDH  RG L  + +  LV+DEAD ML MGFI  ++NI   +P   Q
Sbjct: 131 RQGPQVVVGTPGRLLDHLKRGTLNPSKLSGLVLDEADEMLRMGFIEDVENIMKQIPAVHQ 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F++ P+ I + +  +T   I   +        +K   L + L
Sbjct: 191 TALFSATMPEAIRRITRRFMKEPQEIRIQSSVTTRPDISQSYWMVDGM--RKNEALVRFL 248

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +S+D     IIF   K   + +  +LE  G++  A++G+++Q  R   L   K+G + ++
Sbjct: 249 ESED-FDAAIIFVRTKNATLEVAEALELNGYNSAALNGDMNQALRESTLERLKDGRLNIL 307

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKH 356
           +A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   +   +K+
Sbjct: 308 IATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEHRERRLLKN 367

Query: 357 IDAIEKLIEKKVDWLNGDLSS 377
           I+   KL   +V   N +L S
Sbjct: 368 IERTMKLTIPEVKLPNSELLS 388


>gi|53716164|ref|YP_106468.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei ATCC 23344]
 gi|67639524|ref|ZP_00438373.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei GB8 horse 4]
 gi|254203477|ref|ZP_04909838.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei FMH]
 gi|254205355|ref|ZP_04911708.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei JHU]
 gi|52422134|gb|AAU45704.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei ATCC 23344]
 gi|147745716|gb|EDK52795.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei FMH]
 gi|147754941|gb|EDK62005.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei JHU]
 gi|238520075|gb|EEP83538.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei GB8 horse 4]
          Length = 465

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 153/393 (38%), Positives = 223/393 (56%), Gaps = 16/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 10  FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    L+L PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 70  LDARRFDVQ---ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL++PKR+++      ++  +  +  T  +      LL    + 
Sbjct: 187 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRP 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 247 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E Y+HRIGRTGRA + G A +L +  ++  +  IE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 362

Query: 362 KLIEKKVDW-------LNGDLSSLNPPLEKIDI 387
           + + ++V W         GD + L PP+E + I
Sbjct: 363 QALAREVKWHPLAELKAGGD-APLLPPMETLQI 394


>gi|172062287|ref|YP_001809938.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171994804|gb|ACB65722.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 465

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 152/393 (38%), Positives = 230/393 (58%), Gaps = 16/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GYV  TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 9   FSALPLTPAALANLTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    ++L PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 69  LDTRRFDVQ---AMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  + P TRQTL
Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL+NPK +++      ++  +  +       +++   + QLL  
Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEVKLEERHDNSKIRQRFY---EVAETERLHAVGQLLNH 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   I FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 243 YRPVST-IAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 361

Query: 362 KLIEKKVDWL-------NGDLSSLNPPLEKIDI 387
           + ++++V+W         G+  +L PP+E + I
Sbjct: 362 QALKREVEWHPLAELKPAGN-DTLLPPMETLQI 393


>gi|325128442|gb|EGC51323.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           N1568]
          Length = 462

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 219/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64

Query: 63  LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPTDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    ++P+ IEV       +  E        ++  K  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 361 IEKYINRKL 369


>gi|76809038|ref|YP_334004.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
 gi|76578491|gb|ABA47966.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
          Length = 529

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 151/390 (38%), Positives = 227/390 (58%), Gaps = 34/390 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 58  FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 117

Query: 63  L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99
                             + G  R R P+       L+L PTRELA QV      YGK+ 
Sbjct: 118 FAQLQKAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 177

Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L    ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRM
Sbjct: 178 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 237

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214
           LDMGFI  I  I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+     + S+ A
Sbjct: 238 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 297

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +T+ +           K  LL  LL+    +   IIF   K +   L   L   GF   A
Sbjct: 298 QTVHYV-----DDRDHKDRLLDHLLRDV-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 351

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIG
Sbjct: 352 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 411

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RTGRAGR G A +LV   +   +  IE+ +
Sbjct: 412 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 441


>gi|113954045|ref|YP_730263.1| superfamily II DNA/RNA helicase [Synechococcus sp. CC9311]
 gi|113881396|gb|ABI46354.1| Superfamily II DNA/RNA helicase [Synechococcus sp. CC9311]
          Length = 601

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 142/371 (38%), Positives = 224/371 (60%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++ G S  ++  + D GY +P+PIQ   IP ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 50  FSEFGFSEALLKTLADKGYKEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLL-- 107

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
            E+ +    +P  L+L PTRELA QVA+ F+ Y   + +L V  + GG  F +Q   L R
Sbjct: 108 -ERLQGDSPLPSVLVLAPTRELAMQVAEAFKAYSAGHPHLNVLAIYGGSDFRSQINALRR 166

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR++DH  +G L  + +  LV+DEAD ML MGFI  ++ I   +P  RQ +
Sbjct: 167 GVDVVVGTPGRVMDHMRQGTLNTSGLRSLVLDEADEMLRMGFIDDVEWILEQLPQERQVV 226

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +E++++S+ +L+ P  I + T    A  I H  +    Q S K   L ++L++
Sbjct: 227 LFSATMPNEIRRLSKRYLREPAEITIKTKDKEARRIRHRCITM--QNSHKLEALNRVLEA 284

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T +  IIF   K   + +  SLE  G  V  ++G++ Q  R + +   ++GT+ ++VA
Sbjct: 285 V-TGEGVIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVERLRKGTVNILVA 343

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N+D+P  +E Y+HRIGRTGRAGR G A   +   + + +  +E
Sbjct: 344 TDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRSGDAILFITPRERRFVGNLE 403

Query: 362 KLIEKKVDWLN 372
           + + + ++ ++
Sbjct: 404 RAVGQAIEPMD 414


>gi|240172264|ref|ZP_04750923.1| cold-shock DEAD-box protein, DeaD [Mycobacterium kansasii ATCC
           12478]
          Length = 570

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 144/364 (39%), Positives = 216/364 (59%), Gaps = 10/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL + P V+ A+   GY  PT IQ  TIP ++   DV G+AQTGTGKTA+F +P+L+ 
Sbjct: 15  FVDLQIHPSVLRAIAGVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSK 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++      +    LIL PTRELA QVA+ F +YG     L V  + GG  +  Q   L R
Sbjct: 75  IDVTSTATQ---ALILAPTRELALQVAEAFSRYGAYLPKLNVLPIYGGSSYAVQLAGLRR 131

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  RG L ++ ++ LV+DEAD ML MGF   ++ I S  P  +Q  
Sbjct: 132 GAQIIVGTPGRVIDHLERGTLDLSRVDYLVLDEADEMLAMGFAEDVERILSDTPEYKQVA 191

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K++  +L +P  +     ++TAE I   ++       +K   L ++L+ 
Sbjct: 192 LFSATMPPAIRKITTKYLHDPLEVTSKAKTATAENISQRYIQVAG--PRKMDALTRVLEV 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG---TIQL 298
           +   +  I+F   K+    +   L  +GFS  AI+G+I Q+ R + ++  +EG    I +
Sbjct: 250 E-PFEAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQQQRERTITALREGGPNGIDI 308

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  +   + 
Sbjct: 309 LVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRPGAALLFVSPRERHLLK 368

Query: 359 AIEK 362
           AIEK
Sbjct: 369 AIEK 372


>gi|163802622|ref|ZP_02196513.1| ATP-dependent RNA helicase DbpA [Vibrio sp. AND4]
 gi|159173510|gb|EDP58330.1| ATP-dependent RNA helicase DbpA [Vibrio sp. AND4]
          Length = 459

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 145/367 (39%), Positives = 227/367 (61%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+P ++  +    Y   TPIQ  ++P++L + DV G  +TG+GKTA+F L +L+ 
Sbjct: 6   FDQVGLNPALLETLESLNYTHMTPIQALSLPVILNQRDVIGQGKTGSGKTAAFGLGVLSN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA      G+  +N+ V  L GG+P   Q   LE 
Sbjct: 66  LNVKRFRVQ---SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH ++G++ +  +  LV+DEADRMLDMGF   +  I    P  RQTL
Sbjct: 123 GAHILVGTPGRILDHLDKGRINLEELNTLVLDEADRMLDMGFQDALDAIIDAAPKQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   +++++++  +++P+ I+V +   T+  ++H F       ++  AL   LL  
Sbjct: 183 LFSATFPKKIEQIAQRIMRSPEMIKVESTHDTSSIVQH-FYKVEGTEARDEALANLLLTH 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ ++FCN KK V N+   L  +GFSV  +HG+++QR R + L+ F   ++ ++VA
Sbjct: 242 QP--ESAVVFCNTKKEVQNVADELHHKGFSVIELHGDLEQRERDQALTQFANKSVSILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+   ++D   +  IE
Sbjct: 300 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIE 359

Query: 362 KLIEKKV 368
           + ++  V
Sbjct: 360 EYLDMDV 366


>gi|327438469|dbj|BAK14834.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 517

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 148/380 (38%), Positives = 227/380 (59%), Gaps = 13/380 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L +S   + ++   G+ + TPIQ  T+   +   DV G AQTGTGKTA+F +P++ 
Sbjct: 3   NFSELNISESTLRSIKRMGFEEATPIQEGTVTFAMAGRDVLGQAQTGTGKTAAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++    L++ PTRELA QV++   K G +  + +  + GG     Q + L+ 
Sbjct: 63  KIDPKNPNIQ---ALVIAPTRELAIQVSEELYKLGYDKRVKLLSVYGGQEIGRQIRALKN 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI DH NR  L ++ ++ LV+DEAD ML+MGFI  I  I   VP  RQTL
Sbjct: 120 KPQIIVGTPGRIQDHINRRTLRLDEVQTLVLDEADEMLNMGFIDDINAILENVPSDRQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K++E F+++P+ +++     T E IE  FV   A   +K   L +LL S
Sbjct: 180 LFSATMPPAIRKIAETFMKDPEIVKIKAKELTMENIEQFFVK--ATEREKFDALSRLLDS 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   +  IIF   K+ V  L  +L  +GF    IHG++ Q  R+ +L  FKEG I +++A
Sbjct: 238 QKP-ELAIIFGRTKRRVDELSQALGLRGFLAEGIHGDLSQAKRISVLRQFKEGKIDILIA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGVAVTFVTPREMGYLRIVE 356

Query: 362 KLIEKKVDWLNGDLSSLNPP 381
           +  +K+       ++ L PP
Sbjct: 357 ETTKKR-------MTPLRPP 369


>gi|329119861|ref|ZP_08248535.1| ATP-dependent RNA helicase RhlE [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464017|gb|EGF10328.1| ATP-dependent RNA helicase RhlE [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 444

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 143/369 (38%), Positives = 223/369 (60%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L   ++ A++ AGY  PTPIQ + +P  L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FSDLNLDKNILSALVSAGYETPTPIQAQAVPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64

Query: 63  LEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L +   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTRRSEKPGKGPRALVLTPTRELAAQVEKNALTYAKNMKWFRTVSI-VGGASFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++D  + GK+    +E+L++DEADRMLDMGFI  I+ I +  P  RQ
Sbjct: 124 SKPVDLIVATPGRLMDLMDSGKVDFARLEVLILDEADRMLDMGFIEDIETIVAATPEDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    +NP+ +E+       +  E        ++  +  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKNPEVVEIERVDEQGKIEEQLLYCDDMRHKNR--LLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRSGIAVTFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 361 IEKYIGRKL 369


>gi|126444520|ref|YP_001061297.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 668]
 gi|126224011|gb|ABN87516.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 668]
          Length = 465

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 152/393 (38%), Positives = 224/393 (56%), Gaps = 16/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 10  FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++  R  V+    L+L PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 70  IDARRFDVQ---ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL++PKR+++      ++  +  +  T  +      LL    + 
Sbjct: 187 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRP 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 247 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E Y+HRIGRTGRA + G A +L +  ++  +  IE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 362

Query: 362 KLIEKKVDW-------LNGDLSSLNPPLEKIDI 387
           + + ++V+W         GD + L PP+E + I
Sbjct: 363 QALAREVEWHPLAELKAGGD-APLLPPMETLQI 394


>gi|182680762|ref|YP_001828922.1| DEAD/DEAH box helicase domain-containing protein [Xylella
           fastidiosa M23]
 gi|182630872|gb|ACB91648.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23]
 gi|307579229|gb|ADN63198.1| DEAD/DEAH box helicase domain-containing protein [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 609

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 147/373 (39%), Positives = 226/373 (60%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADLGLS  V+ AV   GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+LT 
Sbjct: 11  FADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTR 70

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
            +L + +     P+ L+L PTRELA QVA+ F++Y  + +   V  + GG  +  Q   L
Sbjct: 71  TVLNQVK-----PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAAL 125

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGR++DH  RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P +RQ
Sbjct: 126 KRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQ 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  +++++++ +LQ+P  + + T ++TA  I   +   +     K   L ++L
Sbjct: 186 VALFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRY--WWVSGLHKLDALTRIL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +T    IIF   K     L   L+ +G +  AI+G++ Q  R + +   K+G + ++
Sbjct: 244 EV-ETFDAMIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDIL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   V   +   +  
Sbjct: 303 VATDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQ 362

Query: 360 IEKLIEKKVDWLN 372
           IE+   + ++ + 
Sbjct: 363 IERATHQPIEAMQ 375


>gi|71898665|ref|ZP_00680835.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
 gi|71731612|gb|EAO33673.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
          Length = 609

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 147/373 (39%), Positives = 226/373 (60%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADLGLS  V+ AV   GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+LT 
Sbjct: 11  FADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTR 70

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
            +L + +     P+ L+L PTRELA QVA+ F++Y  + +   V  + GG  +  Q   L
Sbjct: 71  TVLNQVK-----PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAAL 125

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGR++DH  RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P +RQ
Sbjct: 126 KRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQ 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  +++++++ +LQ+P  + + T ++TA  I   +   +     K   L ++L
Sbjct: 186 VALFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRY--WWVSGLHKLDALTRIL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +T    IIF   K     L   L+ +G +  AI+G++ Q  R + +   K+G + ++
Sbjct: 244 EV-ETFDAMIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDIL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   V   +   +  
Sbjct: 303 VATDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQ 362

Query: 360 IEKLIEKKVDWLN 372
           IE+   + ++ + 
Sbjct: 363 IERATHQPIEAMQ 375


>gi|206562042|ref|YP_002232805.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia J2315]
 gi|198038082|emb|CAR54030.1| ATP-independent RNA helicase [Burkholderia cenocepacia J2315]
          Length = 465

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 155/392 (39%), Positives = 227/392 (57%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GYV  TPIQ  ++P+ L   D+   A+TG+GKTA+F L +L  
Sbjct: 9   FSALPLTPATLANLAQLGYVDMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLAR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    +IL PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 69  LDARRFDVQ---AMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  + P TRQTL
Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL+NPK I++      ++  +  +  T     ++   + QLL  
Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEIKLAERHDDSKIRQRFYEVT---EDERLHAVGQLLNH 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   I FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 243 YRPVST-IAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGAIE 361

Query: 362 KLIEKKVDW------LNGDLSSLNPPLEKIDI 387
           +  +++V+W         D S L PP+E + I
Sbjct: 362 QAQKREVEWHPLAELKPADDSVLLPPMETLQI 393


>gi|225870075|ref|YP_002746022.1| DEAD box helicase family protein [Streptococcus equi subsp. equi
           4047]
 gi|225699479|emb|CAW93007.1| DEAD box helicase family protein [Streptococcus equi subsp. equi
           4047]
          Length = 538

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 146/371 (39%), Positives = 226/371 (60%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTAFNLSEDIQSAVVTAGFEKASPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               K R      + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  N---KIRTADNTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGR+LD   R  L ++++E L++DEAD  L+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHVVVGTPGRLLDLIKRKALRLDHVETLILDEADECLNMGFLEDIEAIISRVPDDRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ ++V     T   ++  +V    Q  +K   + +L+ 
Sbjct: 178 LLFSATMPAPIKEIGVKFMKDPEHVQVKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   + ++V
Sbjct: 236 VQQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLTMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 EHLTKKRMKPL 365


>gi|309972622|gb|ADO95823.1| ATP-dependent RNA helicase DeaD [Haemophilus influenzae R2846]
          Length = 613

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 145/369 (39%), Positives = 230/369 (62%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L  
Sbjct: 7   FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQ 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121
           ++      + P+ L++ PTRELA QVAD  E++ K    T +  L GG  ++ Q + L++
Sbjct: 67  IDPSE---KHPQMLVMAPTRELAIQVADACEQFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   QT 
Sbjct: 124 GAQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240
           LFSATM + ++++++ F+ +P+ +++   +  A  IE  C+   Y    +K   L + L+
Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIEQSCW---YVHGVRKNEALLRFLE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++V
Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 361 EKLIEKKVD 369
           E L++K ++
Sbjct: 360 EHLMKKGIN 368


>gi|15836857|ref|NP_297545.1| ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
 gi|9105065|gb|AAF83065.1|AE003878_13 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
          Length = 614

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 147/373 (39%), Positives = 226/373 (60%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADLGLS  V+ AV   GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+LT 
Sbjct: 17  FADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTR 76

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
            +L + +     P+ L+L PTRELA QVA+ F++Y  + +   V  + GG  +  Q   L
Sbjct: 77  TVLNQVK-----PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAAL 131

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGR++DH  RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P +RQ
Sbjct: 132 KRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQ 191

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  +++++++ +LQ+P  + + T ++TA  I   +   +     K   L ++L
Sbjct: 192 VALFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRY--WWVSGLHKLDALTRIL 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +T    IIF   K     L   L+ +G +  AI+G++ Q  R + +   K+G + ++
Sbjct: 250 EV-ETFDAMIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDIL 308

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   V   +   +  
Sbjct: 309 VATDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQ 368

Query: 360 IEKLIEKKVDWLN 372
           IE+   + ++ + 
Sbjct: 369 IERATHQPIEAMQ 381


>gi|260774084|ref|ZP_05882999.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260611045|gb|EEX36249.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 395

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 148/372 (39%), Positives = 225/372 (60%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ +V + GY  PT IQ + IP++L+  D+   AQTGTGKTA FVLP+L
Sbjct: 1   MSFTQLGLNEALIKSVAELGYQTPTTIQTQAIPVILKGQDLIAAAQTGTGKTAGFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVADN ++Y +   LT   + GG+  +AQ ++L
Sbjct: 61  DRLMQGQTQRKKRIRALILVPTRELAIQVADNVKQYAQYTELTSLAMYGGVDEQAQKQQL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR+LD + +  +  + IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDVLVATPGRLLDMYAQRAVHFDEIEVVVLDEADRMLDMGFIEAINKIIQRLPTEAQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++++++++++  +     I +    ++   I    +       +K ALL  L+
Sbjct: 181 FLLFSATLSNKVRELAKTAVGEAHEISIAAHQASKSNITQWLITV--DKDQKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    +IF   K     L   LEK+G +  A H    Q  R ++L++FK G I+ +
Sbjct: 239 HEYQ-WDQALIFIETKHGAAKLAAQLEKRGIAAEAFHSGRSQAVREQLLADFKAGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ +AARG+DI ++  V N+D+P  A+ Y+HRIGRTGRA   G+A +LV+K++ K++  
Sbjct: 298 IATGVAARGIDIDELPRVVNYDLPFPADEYVHRIGRTGRAEAQGEAISLVSKDNFKNLCM 357

Query: 360 IEK----LIEKK 367
           IE     LIE++
Sbjct: 358 IESRLGHLIERR 369


>gi|227542566|ref|ZP_03972615.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227181764|gb|EEI62736.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 718

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 140/364 (38%), Positives = 222/364 (60%), Gaps = 7/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGL   ++ AV   G+  P+PIQ +TIP +L   DV G+AQTGTGKTA+F LP++
Sbjct: 110 LSFDKLGLPSDILEAVKKVGFETPSPIQARTIPALLDGRDVVGLAQTGTGKTAAFALPII 169

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++K     R P+ L+L PTRELA QVAD F+++  +   + V  + GG  +  Q   L
Sbjct: 170 ARIDKSN---RSPQALVLAPTRELALQVADAFQEFADHVGGINVLPIYGGQAYGIQLSGL 226

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR++DH  +G L +++++ LV+DEAD ML+MGF   ++ I    P  +Q
Sbjct: 227 RRGAHIIVGTPGRVIDHLKKGSLDISHLDYLVLDEADEMLNMGFQEDVERILEDTPDKKQ 286

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM + ++++S+ +L +P  + V   + T   I   ++     +  K   L ++L
Sbjct: 287 VALFSATMPNAIRRLSQQYLDDPYEVTVKAETRTNTNISQRYLNV--AHRNKLDALTRIL 344

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +  +  IIF   K     L   L  +GFS  AI+G+I Q+ R + +   ++G + ++
Sbjct: 345 EVTE-FEAMIIFVRTKYETEELAEKLRARGFSAQAINGDIAQQQRERTVDQLRDGRLDIL 403

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P+  E+YIHRIGRTGRAGR G+A   V   + + + +
Sbjct: 404 VATDVAARGLDVDRISHVLNYDIPHDTESYIHRIGRTGRAGRTGEAILFVTPRERRMLRS 463

Query: 360 IEKL 363
           IE++
Sbjct: 464 IERV 467


>gi|119945503|ref|YP_943183.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119864107|gb|ABM03584.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 433

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 148/373 (39%), Positives = 230/373 (61%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M    +GLS +++ AV   GY   TPIQ + IP++    D+   AQTGTGKTA+F LP+L
Sbjct: 1   MSVDAIGLSAELLKAVKACGYKNLTPIQQQAIPIIRSGSDLLASAQTGTGKTAAFTLPIL 60

Query: 61  TILEKGRARVRMPRT----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            IL K         T    LIL PTRELAAQVA N ++Y +   LT  ++ GG   ++Q 
Sbjct: 61  DILAKNANEKPTTNTTIKALILTPTRELAAQVAANVKEYSQFLPLTSGVVSGGRSMDSQT 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ G DVL+ TPGR+L+H     + +++++ L +DEADRMLD+GF+  IQ +   +  
Sbjct: 121 KMLKVGVDVLVATPGRLLEHLTLRNVDLSHVKYLTLDEADRMLDLGFLTDIQKLMEAIKQ 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             QTL+FSAT +++++ +++  L  PK +E++  +STA  ++      +   ++K  LL 
Sbjct: 181 KHQTLMFSATFSNKVKTLAKQILTTPKTLEISPQNSTAGKVKQQVY--WVSETRKNELLS 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L+  ++  K  ++F   K++   L   L+  G      HG+  Q +R + +  F EG++
Sbjct: 239 ELIGVKN-WKQVLVFAGTKESANLLAKELQLDGIKTAVCHGDKTQGARNQAIQKFTEGSV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDIPD+ +V NF +P  AE+YIHRIGRT RAG+ G A +LV+ +D + 
Sbjct: 298 RVLVATDVAARGLDIPDLPYVVNFHLPFLAEDYIHRIGRTARAGKSGTAVSLVSPKDEQF 357

Query: 357 IDAIEKLIEKKVD 369
           +D IE LI +K +
Sbjct: 358 LDNIETLIGRKFE 370


>gi|115359843|ref|YP_776981.1| ATP-dependent RNA helicase DbpA [Burkholderia ambifaria AMMD]
 gi|115285131|gb|ABI90647.1| ATP-dependent RNA helicase DbpA [Burkholderia ambifaria AMMD]
          Length = 465

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 152/393 (38%), Positives = 230/393 (58%), Gaps = 16/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GYV  TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 9   FSALPLTPAALANLTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    ++L PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 69  LDTRRFDVQ---AMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  + P TRQTL
Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL+NPK +++      ++  +  +       +++   + QLL  
Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEVKLEERHDNSKIRQRFY---EVAETERLHAVGQLLNH 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   I FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 243 YRPVST-IAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 361

Query: 362 KLIEKKVDWL-------NGDLSSLNPPLEKIDI 387
           + ++++V+W         G+  +L PP+E + I
Sbjct: 362 QALKREVEWHPLAELKPAGN-DTLLPPMETLQI 393


>gi|168038086|ref|XP_001771533.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677260|gb|EDQ63733.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 684

 Score =  275 bits (704), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 146/367 (39%), Positives = 222/367 (60%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  +G  P ++  +  AG+  PTPIQ ++ P+ +Q  D+  IA+TG+GKT  +++P  
Sbjct: 150 MSFEAVGFPPDMLRELQIAGFKSPTPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPAF 209

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             LE+ R   R+ P  L+L PTRELA Q+ D   K+G++  +T   + GG P   Q + +
Sbjct: 210 LHLERHRNNSRLGPTVLVLAPTRELATQIQDECVKFGRSSRITSTCVYGGAPKVPQLRDI 269

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGAD++I TPGR+ D     ++ +  +  LV+DEADRMLDMGF P I+ I + +P  RQ
Sbjct: 270 ERGADIVIATPGRLNDFLEVKRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVNEIPSRRQ 329

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           TL+++AT   E++K++ + L NP ++ + NT    A       V     Y K+   L+Q+
Sbjct: 330 TLMYTATWPKEVRKIAGDLLINPVQVNIGNTDELAANKSITQNVEVVVPYEKQ-RRLEQI 388

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+SQ+     IIFC+ K+    L  +L +  F   AIHG+  Q  R  +LS F+ G   +
Sbjct: 389 LRSQEPGSKIIIFCSTKRMCDTLSRNLGRD-FGAAAIHGDKSQSERDFVLSQFRTGRTPI 447

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G A+T  +++D K+  
Sbjct: 448 LVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFSEQDGKYAK 507

Query: 359 AIEKLIE 365
            + K++E
Sbjct: 508 ELIKVLE 514


>gi|319787505|ref|YP_004146980.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466017|gb|ADV27749.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 616

 Score =  275 bits (704), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 142/370 (38%), Positives = 221/370 (59%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL   ++ A+   GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 14  FGELGLPEPLLAALTAVGYETPSPIQAATIPALLSGRDVLGTAQTGTGKTAAFALPILSH 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+   AR   P+ L+L PTRELA QVA+ F++Y        V  + GG  +  Q   L R
Sbjct: 74  LDLKLAR---PQALVLAPTRELAIQVAEAFQRYAVQMPGFQVLPIYGGQGYGPQLHALRR 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L ++ +  LV+DEAD ML MGFI  ++ +   VP  RQ  
Sbjct: 131 GVHVVVGTPGRVIDHLERGTLDLSGLRNLVLDEADEMLRMGFIDDVEAVLKKVPDERQVA 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L+ P  + + + ++T+  I   +   +     K   L ++L++
Sbjct: 191 LFSATMPPPIRRIAQTYLREPVEVTIASKTTTSANIRQRY--WFVSGMHKLDALTRILEA 248

Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   I+F   K     L + L+ +G +  AI+G++ Q+ R + +   K+G + ++
Sbjct: 249 EPFDAM---IVFARTKAATEELANKLQARGVAAAAINGDMQQQQRERTIQQLKDGRLDVL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   V   +   + A
Sbjct: 306 VATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVTPREKGMLRA 365

Query: 360 IEKLIEKKVD 369
           IE+   + ++
Sbjct: 366 IERATRQPIE 375


>gi|261380720|ref|ZP_05985293.1| putative ATP-dependent RNA helicase RhlE [Neisseria subflava
           NJ9703]
 gi|284796437|gb|EFC51784.1| putative ATP-dependent RNA helicase RhlE [Neisseria subflava
           NJ9703]
          Length = 469

 Score =  275 bits (704), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 218/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L   D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALDGRDIMASAQTGSGKTAAFLLPTLQK 64

Query: 63  LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    ++P+ IEV       +  E        ++  K  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPETIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 361 IEKYIGRKL 369


>gi|170736688|ref|YP_001777948.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169818876|gb|ACA93458.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 465

 Score =  275 bits (704), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 156/392 (39%), Positives = 228/392 (58%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GYV  TPIQ  ++P+ L   D+   A+TG+GKTA+F L +L  
Sbjct: 9   FSALPLTPATLANLAQLGYVDMTPIQAASLPVALAGQDLIAQAKTGSGKTAAFSLALLAR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+   AR    + +IL PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 69  LD---ARSFDVQAMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  + P TRQTL
Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL+NPK I++      ++  +  +  T     ++   + QLL  
Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEIKLAERHDDSKIRQRFYEVT---EDERLHAVGQLLNH 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   I FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 243 YRPVST-IAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +LV+ +++  + AIE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLVSMDEMGRVGAIE 361

Query: 362 KLIEKKVDW------LNGDLSSLNPPLEKIDI 387
           +  +++V+W         D S L PP+E + I
Sbjct: 362 QAQKREVEWHPLAELKPADDSVLLPPMETLQI 393


>gi|217970097|ref|YP_002355331.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
 gi|217507424|gb|ACK54435.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
          Length = 677

 Score =  275 bits (704), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 221/369 (59%), Gaps = 6/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ A+ + GY  P+PIQ   IP +L  HD+ G AQTGTGKTA+F LPML
Sbjct: 16  LRFADLQLPAPLLSALAEVGYETPSPIQAACIPQLLAGHDILGEAQTGTGKTAAFALPML 75

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L+    R   P+ L+L PTRELA QVA+ F KY  +  N  V  + GG     Q ++L
Sbjct: 76  AKLDLADTR---PQVLVLTPTRELAIQVAEAFAKYAHHLKNFHVLPIYGGQSMVVQLRQL 132

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA V++ TPGR++DH  R  L ++ ++ +V+DEAD ML MGFI  ++ I    P  RQ
Sbjct: 133 SRGAQVVVGTPGRVMDHLERESLKLDALKAIVLDEADEMLRMGFIDDVEWILEHTPAERQ 192

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++V+   L+NP+ I++   +ST   I   +     +   K   L ++L
Sbjct: 193 TALFSATMPNVIREVARRHLRNPQEIKIRAATSTVAKISQRY--WLVRGVDKLDALTRIL 250

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++++    ++F   K     L   L  +G++  A++G+++Q  R +++   K G + ++
Sbjct: 251 DAEESFDAALVFVRTKIATEELADKLAARGYAAAALNGDMNQGLRERVIEQLKNGALDIV 310

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+P V HV N+D+P   E Y+HRIGRTGRAGR G A   VA  + + +  
Sbjct: 311 IATDVAARGIDVPRVSHVINYDIPYDTEAYVHRIGRTGRAGREGVAILFVAPRETRMLKM 370

Query: 360 IEKLIEKKV 368
           IE+   + +
Sbjct: 371 IERATRQPI 379


>gi|227487924|ref|ZP_03918240.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227092130|gb|EEI27442.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 718

 Score =  275 bits (704), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 140/364 (38%), Positives = 222/364 (60%), Gaps = 7/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGL   ++ AV   G+  P+PIQ +TIP +L   DV G+AQTGTGKTA+F LP++
Sbjct: 110 LSFDKLGLPSDILEAVKKVGFETPSPIQARTIPALLDGRDVVGLAQTGTGKTAAFALPII 169

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++K     R P+ L+L PTRELA QVAD F+++  +   + V  + GG  +  Q   L
Sbjct: 170 ARIDKSN---RSPQALVLAPTRELALQVADAFQEFADHVGGINVLPIYGGQAYGIQLSGL 226

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR++DH  +G L +++++ LV+DEAD ML+MGF   ++ I    P  +Q
Sbjct: 227 RRGAHIIVGTPGRVIDHLKKGSLDISHLDYLVLDEADEMLNMGFQEDVERILEDTPDKKQ 286

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM + ++++S+ +L +P  + V   + T   I   ++     +  K   L ++L
Sbjct: 287 VALFSATMPNAIRRLSQQYLDDPYEVTVKAETRTNTNISQRYLNV--AHRNKLDALTRIL 344

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +  +  IIF   K     L   L  +GFS  AI+G+I Q+ R + +   ++G + ++
Sbjct: 345 EVTE-FEAMIIFVRTKYETEELAEKLRARGFSAQAINGDIAQQQRERTVDQLRDGRLDIL 403

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P+  E+YIHRIGRTGRAGR G+A   V   + + + +
Sbjct: 404 VATDVAARGLDVDRISHVLNYDIPHDTESYIHRIGRTGRAGRTGEAILFVTPRERRMLRS 463

Query: 360 IEKL 363
           IE++
Sbjct: 464 IERV 467


>gi|261400326|ref|ZP_05986451.1| putative ATP-dependent RNA helicase RhlE [Neisseria lactamica ATCC
           23970]
 gi|269209952|gb|EEZ76407.1| putative ATP-dependent RNA helicase RhlE [Neisseria lactamica ATCC
           23970]
          Length = 462

 Score =  275 bits (704), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 149/369 (40%), Positives = 218/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L   D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVSSEGYESPTPIQAQAIPSALDGRDIMASAQTGSGKTAAFLLPTLQR 64

Query: 63  LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPSDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    ++P+ IEV       +  E        ++  K  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  +++
Sbjct: 242 RDAD-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 361 IEKYIGRKL 369


>gi|71276350|ref|ZP_00652627.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Dixon]
 gi|71901364|ref|ZP_00683458.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
 gi|170729445|ref|YP_001774878.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
 gi|71162812|gb|EAO12537.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Dixon]
 gi|71728863|gb|EAO31000.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
 gi|167964238|gb|ACA11248.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
          Length = 609

 Score =  275 bits (704), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 147/373 (39%), Positives = 226/373 (60%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADLGLS  V+ AV   GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+LT 
Sbjct: 11  FADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTR 70

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
            +L + +     P+ L+L PTRELA QVA+ F++Y  + +   V  + GG  +  Q   L
Sbjct: 71  TVLNQVK-----PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAAL 125

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGR++DH  RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P +RQ
Sbjct: 126 KRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQ 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  +++++++ +LQ+P  + + T ++TA  I   +   +     K   L ++L
Sbjct: 186 VALFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRY--WWVSGLHKLDALTRIL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +T    IIF   K     L   L+ +G +  AI+G++ Q  R + +   K+G + ++
Sbjct: 244 EV-ETFDAMIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDIL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   V   +   +  
Sbjct: 303 VATDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQ 362

Query: 360 IEKLIEKKVDWLN 372
           IE+   + ++ + 
Sbjct: 363 IERATHQPIEAMQ 375


>gi|304315659|ref|YP_003850804.1| DEAD/DEAH box helicase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302777161|gb|ADL67720.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 514

 Score =  275 bits (704), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 142/365 (38%), Positives = 226/365 (61%), Gaps = 11/365 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF +L L+ K++ A+ D G+ +P+ IQ + IP++LQ  DV G A+TGTGKT ++  P++
Sbjct: 1   MDFKELNLNEKILKAIDDMGFEEPSKIQSEVIPVLLQGSDVIGQAETGTGKTLAYGAPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +V     L+L PTRELA QV D   + GK   + +  + GG+  + Q K ++
Sbjct: 61  NNIGSNEGKVF---CLVLTPTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDRQIKAIK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D++I TPGR+LD   R  L +N+++ LV+DEAD MLDMGFI  I+ I +     RQT
Sbjct: 118 RGVDIIIGTPGRVLDLIKRDILRLNDVKYLVLDEADEMLDMGFIDDIKEIINHTNKERQT 177

Query: 181 LLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQ 237
           ++FSATM DE++ +++ +++ + K I +   + T  T++H +  V    ++   C +L  
Sbjct: 178 MMFSATMPDEIKNLAKKYMKSDAKFISIVKKTMTVSTVQHFYYEVKNQERFESLCRIL-- 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                +   + IIFC  KK V  L  +++ +G++V  +HG++ Q  R+  L  FKEG + 
Sbjct: 236 ---DVEEPSSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGNLD 292

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARG+DI ++ HV N+++P   E+Y+HRIGRTGRA R G A+TLV   +   +
Sbjct: 293 FLVATDVAARGIDIENLTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYPAL 352

Query: 358 DAIEK 362
             IE+
Sbjct: 353 KRIER 357


>gi|237755972|ref|ZP_04584559.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691876|gb|EEP60897.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 405

 Score =  275 bits (704), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 155/374 (41%), Positives = 226/374 (60%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL LS + + ++ + GY KPT IQ K IP V+   D+   AQTGTGKTA+F +P   I
Sbjct: 8   FKDLNLSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAFGVP---I 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +EK   + +  + LIL PTRELA QVA   ++ GKN  +    + GG     Q   L++G
Sbjct: 65  VEKVNPKQKKVQALILVPTRELAIQVAKEIKELGKNKKVYTLAVYGGKSISHQINFLKKG 124

Query: 123 ADVLIC-TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           +DV++  TPGR+ D   RG L ++N+++ V+DEADRML+MGFI  I+ I S +P  RQ L
Sbjct: 125 SDVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSYLPEDRQIL 184

Query: 182 LFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
           LFSATM  E+ +++E FL +N + I+V     T E I+     V    ++ K   +L   
Sbjct: 185 LFSATMPKEILELAEEFLNENYETIKVKPDEVTVEKIKQIIYRVNPRDKFKKLTEVL--- 241

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             SQ+  +  IIF   K     L   L ++GF+  AIHG+  Q+ R  +L NF+ G +++
Sbjct: 242 --SQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  V  V N+ +P  AE+YIHRIGRTGRAGR G A +++   + K + 
Sbjct: 300 LVATDVAARGLDIKGVDLVINYGLPRDAESYIHRIGRTGRAGREGTAISIMTSSEDKQLQ 359

Query: 359 AIEKLIEKKVDWLN 372
            I+K  +  ++ +N
Sbjct: 360 NIQKKTKANIEVIN 373


>gi|237748776|ref|ZP_04579256.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
 gi|229380138|gb|EEO30229.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
          Length = 465

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 149/395 (37%), Positives = 234/395 (59%), Gaps = 31/395 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL P +  A+ D  Y KPTP+Q K IP  ++  D+   +QTG+GKTA+F+LP L
Sbjct: 1   MTFEALGLHPLIQKALADIHYDKPTPVQEKAIPAGIEGKDLLVSSQTGSGKTAAFMLPAL 60

Query: 61  TIL------------------------EKGRARVRMPRTLILEPTRELAAQV---ADNFE 93
                                      EK R     P+ L+L PTRELA Q+   ++++ 
Sbjct: 61  HRFASVPFEKSDKKTFNQKRQAARAKGEKVRYEPAHPKMLVLTPTRELAMQIVQSSEDYS 120

Query: 94  KYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVID 153
            Y K++  TVA+L GG+P+  Q + L +  ++L+ TPGR++DH + GK+  + +EILV+D
Sbjct: 121 AYLKHFR-TVAIL-GGMPYPKQMQLLAKNPEILVATPGRLIDHMHSGKIRFDQLEILVLD 178

Query: 154 EADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
           EADRMLDMGFI  I+ I +  P TRQT+LFSAT+   +  ++    ++P+ I +++ +S 
Sbjct: 179 EADRMLDMGFIDDIETIIAATPETRQTMLFSATLDGIVGNMARKITRDPELIHIHSVASR 238

Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            E I+   +        K  LL  LL  + ++   ++F   K++   +   L   GFS  
Sbjct: 239 HENIDQ-MIHFVDDLPHKNRLLDHLLHDR-SLDQALVFTATKRDADIVADRLAIAGFSAA 296

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
           A+HG++ Q +R + L+  + G ++++VA+D+AARG+DIP++ HV N+D+P   E+Y+HRI
Sbjct: 297 ALHGDMPQGARNRTLTKLRRGQVKILVATDVAARGIDIPNITHVVNYDLPKFPEDYVHRI 356

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           GRTGRAGRHG A +LV   D  ++  IE+  ++ +
Sbjct: 357 GRTGRAGRHGLAISLVNHNDNNNVRKIERFTKQSI 391


>gi|149194827|ref|ZP_01871921.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus
           TB-2]
 gi|149134986|gb|EDM23468.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus
           TB-2]
          Length = 460

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 145/363 (39%), Positives = 229/363 (63%), Gaps = 11/363 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L  +++  + + G+ KP+PIQ K IP++L+  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MTFKDFKLKKEIIKRLEEIGFEKPSPIQEKAIPVILEGKDVVAQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + ++K        + LI+ PTRELA QV++   ++GK   +  A + GG  +  Q K +E
Sbjct: 61  SKIKKDE------KALIITPTRELAIQVSEEIFRFGKYLGVHTATVYGGSSYNRQIKHIE 114

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             +  +I TPGR+LD    GK+ +   + +++DEAD MLDMGF+  I+ I   VP  RQT
Sbjct: 115 -NSQFIIATPGRLLDLLKSGKIDIAP-KYVILDEADEMLDMGFLDDIKEIFKFVPSNRQT 172

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + ++ +++  L+NP+ I +     T E I+  F     ++ +K AL++ L+ 
Sbjct: 173 LLFSATMPEPIKNLAKTILKNPEFITITRKQVTNENIKEYFYVI-DEFERKDALIR-LID 230

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  K+ I+FC  KK+V ++   L   GF    +HG++DQR R +++  FK   I+++V
Sbjct: 231 YKNPTKS-IVFCRTKKDVDDIAEFLSGAGFDAKGLHGDMDQRKREEVIRGFKSDRIEILV 289

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ +V HVFN+ +P   E+Y+HRIGRTGRAG+ G A +LV   + + ++ I
Sbjct: 290 ATDVAARGLDVNNVSHVFNYHLPLDPESYVHRIGRTGRAGKEGMAISLVTPHEFRALNRI 349

Query: 361 EKL 363
           +K+
Sbjct: 350 QKI 352


>gi|77917943|ref|YP_355758.1| cold-shock inducible ATP-independent RNA helicase [Pelobacter
           carbinolicus DSM 2380]
 gi|77544026|gb|ABA87588.1| ATP-dependent RNA helicase CsdA [Pelobacter carbinolicus DSM 2380]
          Length = 583

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 152/367 (41%), Positives = 226/367 (61%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L L P++   + + GY  P+PIQ ++IP +L+  D+ G AQTGTGKTA+F LP+L+ 
Sbjct: 9   FAELSLCPEINRVIEEIGYETPSPIQARSIPPLLEGRDLLGQAQTGTGKTAAFALPLLSR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     +R P+ L+L PTRELA QVA+  + Y ++     V  + GG     Q ++L+R
Sbjct: 69  LD---LSLRSPQVLVLTPTRELALQVAEAVQTYARHLQGFHVLPVYGGQNMGQQLRQLQR 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI DH  RG L ++ +  +V+DEAD ML MGFI  ++ I    P  RQT 
Sbjct: 126 GAHVVVGTPGRIQDHLRRGTLKLDRLSCVVVDEADEMLKMGFIDDVEQILEHAPEQRQTA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +E+ KV+   L+ P  + +   +ST ETI   F        +K   L ++L++
Sbjct: 186 LFSATMPNEVLKVARRHLREPVEVRIKAKTSTVETISQRFWQVRG--VRKLDALTRILEA 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D +   I+F   K   V L   LE +GFS  A++G++ Q  R K +   K G++ ++VA
Sbjct: 244 ED-IDAMIVFVRTKIATVELAEKLEARGFSSAALNGDMTQALREKTVERLKSGSLDIVVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A   VA  + + + AIE
Sbjct: 303 TDVAARGLDVQRISHVVNYDIPYDTESYVHRIGRTGRAGREGSAILFVAPRERRMLAAIE 362

Query: 362 KLIEKKV 368
           +   +K+
Sbjct: 363 QATRQKI 369


>gi|325105194|ref|YP_004274848.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324974042|gb|ADY53026.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 608

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 140/367 (38%), Positives = 230/367 (62%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+   +V A+ + G+  PTPIQ   IP++L   +D  G+AQTGTGKTA+F LP+L 
Sbjct: 4   FNELGIRHDIVNAITELGFTNPTPIQESAIPVLLSGSNDFVGLAQTGTGKTAAFGLPLLE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           +++  +     P+ LIL PTREL  Q++++ + + KN  N+ V  + GG     Q ++++
Sbjct: 64  LIDNTKNH---PQALILCPTRELCLQISNDLKNFSKNLKNVNVVAVYGGANIVNQLREIK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD  NR  +  +N+  +V+DEAD ML+MGF   I +I S  P T++T
Sbjct: 121 RGVQIVVATPGRMLDIINRKAIDFSNVNYVVLDEADEMLNMGFQDDINDILSTTPDTKKT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+++++EN++ NP  + V   +S    IEH +    A+   K A  ++++ 
Sbjct: 181 WLFSATMPKEVRRIAENYMTNPHELTVGKQNSGNANIEHEYYIVKAR--DKYAAFKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GI+FC  K     +  SL K G++  ++HG++ Q+ R K++  ++E ++QL++
Sbjct: 239 FNPDIF-GIVFCRTKIETQEIAESLVKDGYNADSLHGDLSQQQRDKVMKRYREKSLQLLI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ +V HV N+ +P+  ENY HR GRT RAG+ G +  ++   +I  I  I
Sbjct: 298 ATDVAARGIDVNNVTHVINYSLPDEIENYTHRSGRTARAGKTGVSIAIINSREIHKIRQI 357

Query: 361 EKLIEKK 367
           EK+I K+
Sbjct: 358 EKVIGKQ 364


>gi|171315596|ref|ZP_02904831.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
 gi|171099267|gb|EDT44026.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
          Length = 465

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 152/393 (38%), Positives = 230/393 (58%), Gaps = 16/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GYV  TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 9   FSALPLTPAALANLTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    ++L PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 69  LDTRRFDVQ---AMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  RG L ++ +  LV+DEADRMLDMGF   I  +  + P TRQTL
Sbjct: 126 GAHIVVGTPGRIMDHLERGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL+NPK +++      ++  +  +  T    +++   + QLL  
Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEVKLEERHDNSKIRQRFYEVT---ETERLHAVGQLLNH 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 243 YRPVST-IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 361

Query: 362 KLIEKKVDWL-------NGDLSSLNPPLEKIDI 387
           + ++++V+W         G+  +L PP+E + I
Sbjct: 362 QALKREVEWHPLAELKPAGN-DTLLPPMETLQI 393


>gi|288924465|ref|ZP_06418438.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
 gi|288344188|gb|EFC78744.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
          Length = 459

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 149/361 (41%), Positives = 217/361 (60%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ A+ + GY  P+PIQ+ TIP +L+  DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 20  FHDLGLGTAVLRALTELGYEVPSPIQVGTIPALLEGRDVVGLAQTGTGKTAAFALPILSR 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++    R    + L+L PTREL  QVA+ F +Y  +   L V  + GG  +  Q   + R
Sbjct: 80  ID---VRSTSTQALVLAPTRELVLQVAEAFGRYAHHLPGLHVLPVYGGQAYAPQLAGIRR 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  RG L +  + +LV+DEAD ML MGF   +  I +  P  +Q  
Sbjct: 137 GAQVVVGTPGRVIDHLERGTLDLGGLRMLVLDEADEMLRMGFQEEVDRILADTPDAKQVA 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++S  +L++P  I V   + TA      F+ T A   K  AL + L   
Sbjct: 197 LFSATMPAPIRRISRQYLRDPVEITVRARTVTAANTRQRFL-TVAGPRKMDALTRVL--E 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  IIF   K    ++   L  +GF+  AI+G++ Q  R K+++  ++G + L+VA
Sbjct: 254 VEPFEAMIIFVRTKSATEDVAERLRSRGFATEAINGDLGQPQREKLIAQLRDGALDLLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HV N+D+P   E+Y+HRIGRTGRAGR G+A  LV   +   + AIE
Sbjct: 314 TDVAARGLDVERVTHVVNYDIPTDPESYVHRIGRTGRAGRSGEALLLVTPREKGLLAAIE 373

Query: 362 K 362
           K
Sbjct: 374 K 374


>gi|225166117|ref|ZP_03727846.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV2]
 gi|224799638|gb|EEG18138.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV2]
          Length = 606

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 146/361 (40%), Positives = 221/361 (61%), Gaps = 7/361 (1%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
           A+LGLSP+++ AV   G+ + +PIQ   IPL+L   DV G + TG+GKTA+F LP +   
Sbjct: 1   AELGLSPELLKAVDKMGFEEASPIQAAVIPLLLAGSDVVGQSSTGSGKTAAFALPAI--- 57

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLERG 122
           E+   +++  + LIL PTRELA QVA+   K        + + I GG  +E Q + L  G
Sbjct: 58  ERVDTKLKAVQVLILCPTRELAVQVAEEVNKLASFKRGVMEVPIYGGQSYERQFRALAAG 117

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A V+I TPGR++DH  RG L ++ + ++++DE DRMLDMGF   I++I   VP  RQ+L 
Sbjct: 118 AQVVIGTPGRVMDHMERGTLKLDKLSMVILDECDRMLDMGFRDDIEHILKSVPEQRQSLF 177

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++ +   F+ NP  +++ T   +A  ++  +         K  +L +L+   
Sbjct: 178 FSATMPREIRDMISRFIPNPAWVKIETQMQSAPQVDQVYFEV--DRRSKLEVLTRLIDLN 235

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D  + GIIFC+ K  V  L  +L  +G++   +HG+I Q  R + +  FK    + ++A+
Sbjct: 236 D-FRYGIIFCSTKIMVDELDENLHARGYACDRLHGDITQAQRTRTMEKFKRRGFEFLIAT 294

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+ D+  VFNFD+PN AE+Y HRIGRTGRAGR GKAFT V+  ++  + ++ +
Sbjct: 295 DVAARGLDVDDLEVVFNFDLPNDAEDYTHRIGRTGRAGRKGKAFTFVSGRELWKLQSMVR 354

Query: 363 L 363
            
Sbjct: 355 F 355


>gi|28198133|ref|NP_778447.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
 gi|28056193|gb|AAO28096.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
          Length = 615

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 147/373 (39%), Positives = 226/373 (60%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADLGLS  V+ AV   GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+LT 
Sbjct: 17  FADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTR 76

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
            +L + +     P+ L+L PTRELA QVA+ F++Y  + +   V  + GG  +  Q   L
Sbjct: 77  TVLNQVK-----PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAAL 131

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGR++DH  RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P +RQ
Sbjct: 132 KRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQ 191

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  +++++++ +LQ+P  + + T ++TA  I   +   +     K   L ++L
Sbjct: 192 VALFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRY--WWVSGLHKLDALTRIL 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +T    IIF   K     L   L+ +G +  AI+G++ Q  R + +   K+G + ++
Sbjct: 250 EV-ETFDAMIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDIL 308

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   V   +   +  
Sbjct: 309 VATDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQ 368

Query: 360 IEKLIEKKVDWLN 372
           IE+   + ++ + 
Sbjct: 369 IERATHQPIEAMQ 381


>gi|167837073|ref|ZP_02463956.1| ATP-dependent RNA helicase [Burkholderia thailandensis MSMB43]
          Length = 475

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 150/390 (38%), Positives = 227/390 (58%), Gaps = 34/390 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 41  FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 100

Query: 63  L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99
                             + G  R R P+       L+L PTRELA QV      YGK+ 
Sbjct: 101 FAQLQKTQALQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 160

Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L    ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRM
Sbjct: 161 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 220

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214
           LDMGFI  I  I +  P +RQT+LFSAT+  ++  ++   L++P+RIE+     + S+ A
Sbjct: 221 LDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 280

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +T+ +           K  LL  LL+    +   IIF   K +   L   L   GF   A
Sbjct: 281 QTVHYV-----DDRDHKDRLLDHLLRDV-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 334

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIG
Sbjct: 335 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 394

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RTGRAGR G A +LV   +   +  IE+ +
Sbjct: 395 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 424


>gi|226315242|ref|YP_002775138.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226098192|dbj|BAH46634.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 575

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 151/364 (41%), Positives = 218/364 (59%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LG+  +++ A+   G  +PTPIQ K IP+VL+  DV   AQTGTGKT +FVLP   
Sbjct: 6   DFLRLGIHKELIDALQANGITEPTPIQEKAIPVVLEGKDVIAQAQTGTGKTLAFVLP--- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           ILE    +    + LIL PTRELA Q+    +K  +   ++ V  + GG     Q +KL+
Sbjct: 63  ILENADPQATHVQALILTPTRELALQITAEVKKLTEKLEDIQVLAVYGGQDVNQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGR+LDH  RG + ++ + + V+DEAD+ML MGF+P +++I +  PF +QT
Sbjct: 123 GKIHVVIATPGRLLDHLRRGTIDLSQVSMFVLDEADQMLHMGFLPEVEDIMANTPFEKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM++++Q +++ F+Q P+ I+V     T + I    V T  +   K A L  LL 
Sbjct: 183 LLFSATMSEQVQALAKRFMQKPENIKVQGKRITLDDIRQIAVETTDRA--KQATLCSLLD 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      +IFC  K+    L   L+   +    +HG++ Q  R  ++  F+E  IQ +V
Sbjct: 241 EQRPFL-AVIFCRTKRRASKLNAELQGLDYMSDELHGDLSQAKREDVMKRFREARIQYLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   ++YIHRIGRTGRA   G AFTLV  +D   +  I
Sbjct: 300 ATDVAARGLDVEGVTHVFNYDIPEDVDSYIHRIGRTGRAKEKGTAFTLVTAKDWGQLREI 359

Query: 361 EKLI 364
           E+ I
Sbjct: 360 EQGI 363


>gi|222054856|ref|YP_002537218.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32]
 gi|221564145|gb|ACM20117.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32]
          Length = 456

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 161/434 (37%), Positives = 236/434 (54%), Gaps = 22/434 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L  +V+  + D G+   TPIQ K +P  L   DV G AQTGTGKTA+F++ + 
Sbjct: 1   MKFTDLNLPEQVLKGIADTGFTDCTPIQEKALPPALLGKDVAGQAQTGTGKTAAFLISLF 60

Query: 61  T-ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           T +L + +A     PR LIL PTREL  Q+  + +  GK     +  + GG+ +  Q   
Sbjct: 61  TRLLNQEKAGTEHHPRALILAPTRELVVQIEKDAQALGKYTGFNIQAIYGGVDYMKQKNA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPF- 176
           L+ G D++I TPGR++D+  +    + NIE LVIDEADRM DMGFI  ++ I   L PF 
Sbjct: 121 LKEGVDIVIGTPGRLIDYLKQKVYSLKNIEALVIDEADRMFDMGFIADLRFILRRLPPFD 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ L+FSAT+   + +++  F+  P+++ V     TAE +E      Y    K+   L 
Sbjct: 181 ARQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVL---YHVARKEKFPLL 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L  +  M   +IF N K+    L   L    F    I G+++QR RM+IL +FK G +
Sbjct: 238 LGLLRKKGMDRTMIFVNTKREAEYLYDRLNANEFPARVISGDVEQRKRMRILEDFKNGKL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +M+A+D+A+RGL I  V HV N+D+P  AE+Y+HRIGRT RAG  GKA +L  ++   H
Sbjct: 298 PIMIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISLADEDGAFH 357

Query: 357 IDAIEKLIEKK--VDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKSTGFDRRKKNY 413
           I+ I + I++K  V+W   +L              H++ R K  P P+       + +N+
Sbjct: 358 IEDIHEYIKEKIPVEWAEDELFV------------HDYKRTKPRPKPESKPAAKPKGRNH 405

Query: 414 SSQKSHIPLKESEK 427
                  P +  EK
Sbjct: 406 GKSGGKAPARTVEK 419


>gi|315182662|gb|ADT89575.1| DEAD-box ATP dependent DNA helicase [Vibrio furnissii NCTC 11218]
          Length = 406

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 148/361 (40%), Positives = 217/361 (60%), Gaps = 11/361 (3%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMP-----R 74
           G   PT IQ + IP VL+  DV   AQTGTGKTA+F LP++        + R P     R
Sbjct: 9   GIHTPTEIQAQAIPHVLEGKDVLAGAQTGTGKTAAFGLPLIQRFVDHPLQ-REPNSKDIR 67

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTRELA QV DN + Y +   L +    GG     Q + L  GAD+LI TPGR+L
Sbjct: 68  ALVLVPTRELAQQVFDNLQSYAQGSELKIVTAYGGTSMNVQKQNLRGGADILIATPGRLL 127

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           DH +   L + N E LV+DEADRMLDMGF+P IQ +   +   RQTL FSAT   +++  
Sbjct: 128 DHAHVKTLYLGNAEALVLDEADRMLDMGFMPDIQRVLRKMQHERQTLFFSATFDSKIKAF 187

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           +   +QNP  ++V   +STA+T+E           +K  LL  L+ S++  +  ++F   
Sbjct: 188 AHRMMQNPVEVQVTPSNSTADTVEQMVYPV--DKKRKRELLAYLIGSRN-WQQVLVFTRT 244

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K+    L   L+  G    +I+G+  Q +R K L +FK G ++ ++A+D+AARG+DI  +
Sbjct: 245 KQGSDALAQELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIATDVAARGIDIAQL 304

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV--DWLN 372
             V NFD+P +AE+Y+HRIGRTGRAG+ G A +L++ ++   ++AIE+L++K++  +WL 
Sbjct: 305 EQVVNFDMPFKAEDYVHRIGRTGRAGKAGFAVSLMSHDEQPLLEAIERLLDKRLPQEWLK 364

Query: 373 G 373
           G
Sbjct: 365 G 365


>gi|260770312|ref|ZP_05879245.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972]
 gi|260615650|gb|EEX40836.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972]
          Length = 632

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 222/370 (60%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ D G+V PTPIQ   IPL+L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNSAILSALTDMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L+  + +   P+ +++ PTRELA QVA   +  G+N   L V  + GG     Q + L
Sbjct: 66  NKLDLNQYK---PQAIVMAPTRELAIQVAAEVKNLGQNIKGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D  +R +L ++     V+DEAD ML MGF+  +  I    P T Q
Sbjct: 123 KSGAHIVVGTPGRVKDLISRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++ + + FL++P R++V   + T   +E  +        +K   + +LL
Sbjct: 183 RVLFSATMPPMVKDIVDRFLRDPARVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVD 369
           IE++    ++
Sbjct: 360 IERVTRSSME 369


>gi|225181200|ref|ZP_03734646.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
 gi|225168169|gb|EEG76974.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
          Length = 470

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 147/372 (39%), Positives = 222/372 (59%), Gaps = 10/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +S  V+ AV + G+ + TPIQ + IP  L+  D+ G A TGTGKTA+F +PM+  
Sbjct: 4   FNDFAVSENVLQAVSNMGFEEATPIQEQAIPTALKGLDLIGQAHTGTGKTAAFGVPMVEK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEK  + V+    L++ PTRELA QVA+   K G+   +    + GG     Q + L++ 
Sbjct: 64  LEKNGSTVQ---ALVVTPTRELAVQVAEELNKIGQYKGIRTLPVYGGQDIGRQIRGLQKR 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  R  + +  + ++V+DEAD ML+MGFI  I+ I    P  RQTLL
Sbjct: 121 PQIIVGTPGRLLDHIRRRTVRLGQVSMVVLDEADEMLNMGFIEDIEAILQETPQERQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQLLQ 240
           FSATM   +++++  F+++P++I V +   T    E  H  +    ++   C LL    Q
Sbjct: 181 FSATMPGPIEQLARRFMRDPQKISVRSKEVTVPNTEQFHMVMEERQKFDVLCRLLD--TQ 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S D     I+F   K+ V  L  +L K+G+S   IHG++ Q  R  ++  FK+G+I ++V
Sbjct: 239 SPDL---AIVFGRTKRRVDELYEALNKRGYSAEGIHGDMTQARRDSVMRQFKDGSIDILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG  G A T V+  ++ H+  I
Sbjct: 296 ATDVAARGLDITGVTHVYNFDIPQDPESYVHRIGRTGRAGNTGMAVTFVSNREVGHLRTI 355

Query: 361 EKLIEKKVDWLN 372
           E   + ++  L+
Sbjct: 356 EYGTKSRIPRLS 367


>gi|320159208|ref|YP_004191586.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
 gi|319934520|gb|ADV89383.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
          Length = 398

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 148/362 (40%), Positives = 218/362 (60%), Gaps = 4/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   +  A+   GY KPT IQ + IP++L+  D+   AQTGTGKTASFVLPML
Sbjct: 1   MSFTQLGLCASLTDAIDTLGYPKPTRIQTQAIPVILEGRDLIAAAQTGTGKTASFVLPML 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G+  + +  R LIL PTRELA QV +  ++YG+N  L    + GG+  +AQ + L
Sbjct: 61  EKLRHGQTQKKKRTRALILVPTRELAIQVDEKIKQYGQNLALRSLAMFGGVDEKAQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +    IE+LV+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IEGLDILVATPGRLLDMYGQRAVYFEEIEMLVLDEADRMLDMGFIDDINKILDRLPENIQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++++++ ++++ + NP  I +    ++   IE   +       +K ALL  L+
Sbjct: 181 HLLFSATLSNKVRDLAKSAIHNPFEISIAANQASKSNIEQWIITV--DKDQKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++     +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 239 K-ENQWDQTLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLEDFKAGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A +LV+K++ K++  
Sbjct: 298 VSTGVAARGIDIEALPRVVNYDLPFPADEYVHRIGRTGRANAKGEAISLVSKDNFKNLCM 357

Query: 360 IE 361
           IE
Sbjct: 358 IE 359


>gi|323497181|ref|ZP_08102201.1| ATP-dependent RNA helicase DbpA [Vibrio sinaloensis DSM 21326]
 gi|323317756|gb|EGA70747.1| ATP-dependent RNA helicase DbpA [Vibrio sinaloensis DSM 21326]
          Length = 458

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 150/360 (41%), Positives = 221/360 (61%), Gaps = 7/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P+++  V   GY + TPIQ + +PLVL   DV G  +TG+GKTA+F L +L+ 
Sbjct: 5   FKTLSLRPELLETVASLGYSEMTPIQQQALPLVLAGKDVIGQGKTGSGKTATFSLGVLSN 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA       +  +N+ V  L GG+P   Q   LE 
Sbjct: 65  LNVKRFRVQ---SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH ++G++ ++ +  LV+DEADRMLDMGF   I  I S  P  RQ+L
Sbjct: 122 GAHILVGTPGRILDHLSKGRINLDELNTLVLDEADRMLDMGFEDAIDAIISAAPTQRQSL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++ ++E  +  P+ ++V +   T  TIE  F A      K  AL   LL  
Sbjct: 182 LFSATFPANIKTLAEKVMSEPEMVKVESTHETT-TIEQRFYALEGSEEKDNALETLLLVH 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   ++ ++FCN KK V N+   L  +GFSV  +HG+++QR R + L+ F   ++ ++VA
Sbjct: 241 KP--ESSVVFCNTKKEVQNVTDELNHRGFSVVELHGDMEQREREQALTMFANKSVSILVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+  ++++   ++ IE
Sbjct: 299 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGIAFSFYSEKEHYRVERIE 358


>gi|117621384|ref|YP_857155.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117562791|gb|ABK39739.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 642

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 149/393 (37%), Positives = 234/393 (59%), Gaps = 15/393 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL+  V+ A+ D GY +P+PIQ   IP ++  HD+ G AQTGTGKTA+F LP+L+ 
Sbjct: 21  FSELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTAAFALPLLSR 80

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           LE G    R  + L+L PTRELA QVA+  ++Y  +  +  V  + GG  +E Q + L R
Sbjct: 81  LEAGN---RNTQILVLAPTRELALQVAEACQRYAHHMPDFHVLPIYGGASYETQTRALRR 137

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++D   R  L ++ ++ LV+DEAD ML MGFI  +  I    P  RQ  
Sbjct: 138 GAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCPAGRQVA 197

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +++++V++  L+ PK I++ + ++TA TI   +      +  K   + +LL+ 
Sbjct: 198 LFSATMPEQIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQVTGLH--KLDAMTRLLEV 255

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  ++F   K     L   L  +G +  A+HG+I Q+ R + +   ++G + +++A
Sbjct: 256 E-PYEALLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIA 314

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   VA  + + + AIE
Sbjct: 315 TDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIE 374

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
               + ++ +        P  E  DI QH  A+
Sbjct: 375 HATRQAIEPMK------MPSTE--DINQHRLAK 399


>gi|315181381|gb|ADT88294.1| ATP-dependent RNA helicase DeaD [Vibrio furnissii NCTC 11218]
          Length = 632

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 222/370 (60%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ D G+V PTPIQ   IPL+L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNSAILSALTDMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L+  + +   P+ +++ PTRELA QVA   +  G+N   L V  + GG     Q + L
Sbjct: 66  NKLDLNQYK---PQAIVMAPTRELAIQVAAEVKNLGQNIKGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D  +R +L ++     V+DEAD ML MGF+  +  I    P T Q
Sbjct: 123 KSGAHIVVGTPGRVKDLISRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++ + + FL++P R++V   + T   +E  +        +K   + +LL
Sbjct: 183 RVLFSATMPPMVKDIVDRFLRDPARVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVD 369
           IE++    ++
Sbjct: 360 IERVTRSSME 369


>gi|87302313|ref|ZP_01085138.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701]
 gi|87283238|gb|EAQ75194.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701]
          Length = 645

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 138/367 (37%), Positives = 221/367 (60%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  GL  +++ AV D GY  P+PIQ   IP ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 87  FAGFGLGAEILAAVADCGYSDPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLAR 146

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121
           L+  +   R P+ L+L PTRELA QVA+ F  Y  K   + V  + GG  F  Q  +L+R
Sbjct: 147 LDPQQ---RTPQVLVLTPTRELALQVAEAFNGYAAKLPQVRVLPIYGGADFRDQIVRLKR 203

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH  +G L ++ +  LV+DEAD ML MGFI  ++ +   +P  RQ +
Sbjct: 204 GVQIVVGTPGRVMDHMRQGTLDLSGLRCLVLDEADEMLRMGFIDDVEWVLEQLPQQRQVV 263

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++S  +LQNP  + +    +   TI    +  +   ++K   L ++L++
Sbjct: 264 LFSATMPSEIRRLSRKYLQNPAEVTIQQKGAENSTIRQRHLVVHG--AQKLEALTRVLEA 321

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + + +  IIF   K   + +  +LE+QG+ V  ++G++ Q  R + +   + G + ++VA
Sbjct: 322 ESS-EGVIIFARTKAITLTVSEALEQQGYDVAVLNGDVPQNQRERTVERLRSGQVNVLVA 380

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D+P  +E Y+HRIGRTGRAGR G A   +   + + +  +E
Sbjct: 381 TDVAARGLDVDRITLVINYDIPFDSEAYVHRIGRTGRAGRQGDAILFLTPRERRFLGGLE 440

Query: 362 KLIEKKV 368
           + + K +
Sbjct: 441 RAVGKAI 447


>gi|91794302|ref|YP_563953.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91716304|gb|ABE56230.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 419

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 149/381 (39%), Positives = 223/381 (58%), Gaps = 14/381 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F    L P ++ ++    YV PTP+Q + IP +L  HD+   AQTGTGKTA+F +P+ 
Sbjct: 10  MSFTAFNLHPVLLASIKAQSYVDPTPVQRQAIPEILLGHDLLVGAQTGTGKTAAFAIPLV 69

Query: 60  --LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L +  +   + ++ + LIL PTRELA QV  N     +   L  A+  GG     Q +
Sbjct: 70  HKLLMQSEEAHQGKVIKGLILTPTRELALQVQHNIHALLQGTELKHAIAYGGASIGEQVR 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             + G D+L+ TPGR+LDH     + + ++E LV DEADRMLDMGF   I ++   +P  
Sbjct: 130 SFKAGVDILVATPGRLLDHLRHKAVSLKHVEYLVFDEADRMLDMGFKDEIVDLLKRLPKQ 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE---HCFVATYAQYSKKCAL 234
           RQTLLFSAT+ D +   S+N L  PK IEV   ++    IE   +C         +K +L
Sbjct: 190 RQTLLFSATLNDSIFSFSKNLLNEPKVIEVAKANTKVAKIEERVYC-----VDEERKLSL 244

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  LL S++  +  ++F   K+   NL   ++K G    A HG++ Q  R  +L +F + 
Sbjct: 245 LCHLL-SKERWQQVLVFSRTKQGADNLACQMQKSGIEALAFHGDLSQSVRESVLKDFSQA 303

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            +Q++VA+D+AARGLDI D+ +V N+++P+ +E+YIHRIGRTGRAG+ G A TL A ED 
Sbjct: 304 KVQVLVATDVAARGLDIEDLNYVVNYELPHVSEDYIHRIGRTGRAGKDGIAVTLFAIEDT 363

Query: 355 KHIDAIEKLIEKKV--DWLNG 373
             + ++E L+++++   W  G
Sbjct: 364 AKLMSLETLLDRRLPQQWYPG 384


>gi|27367363|ref|NP_762890.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|27358932|gb|AAO07880.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
          Length = 398

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 148/362 (40%), Positives = 218/362 (60%), Gaps = 4/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   +  A+   GY KPT IQ + IP++L+  D+   AQTGTGKTASFVLPML
Sbjct: 1   MSFTQLGLCASLTDAIDTLGYPKPTRIQTQAIPVILEGRDLIAAAQTGTGKTASFVLPML 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G+  + +  R LIL PTRELA QV +  ++YG+N  L    + GG+  +AQ + L
Sbjct: 61  EKLRHGQTQKKKRIRALILVPTRELAIQVDEKIKQYGQNLALRSLAMFGGVDEKAQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +    IE+LV+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IEGLDILVATPGRLLDMYGQRAVYFEEIEMLVLDEADRMLDMGFIDDINKILDRLPENIQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++++++ ++++ + NP  I +    ++   IE   +       +K ALL  L+
Sbjct: 181 HLLFSATLSNKVRDLAKSAIHNPFEISIAAKQASKSNIEQWIITV--DKDQKSALLSHLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++     +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 239 K-ENQWDQTLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLEDFKAGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A +LV+K++ K++  
Sbjct: 298 VSTGVAARGIDIEALPRVVNYDLPFPADEYVHRIGRTGRANAKGEAISLVSKDNFKNLCM 357

Query: 360 IE 361
           IE
Sbjct: 358 IE 359


>gi|317153822|ref|YP_004121870.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944073|gb|ADU63124.1| DEAD/DEAH box helicase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 421

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 221/370 (59%), Gaps = 6/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F       ++   +   G+  PTPIQ   IP VL+  DV G+AQTGTGKTA+F LP+L
Sbjct: 1   MTFDHFSFDLRINAGIKSCGFTVPTPIQTLAIPEVLKGRDVMGLAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L   RA  + P R L+L PTRELA Q+ + F+ +G+   +  + + GG+ F  Q    
Sbjct: 61  QRLLDSRATGQGPIRCLVLAPTRELALQIQETFDVFGRQAGIRSSCVFGGVGFNPQINA- 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R A V++  PGR++    +G + +++++ LV+DEADRMLDMGF+P ++ I S +P  RQ
Sbjct: 120 ARKATVVVACPGRLVALLQQGDIRLDHVDTLVLDEADRMLDMGFMPDLKRILSRLPAKRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  +++K+++  L +P R++V+  +   E++   F         K  LL+ LL
Sbjct: 180 NLLFSATMPADIRKLADTILVDPARVQVSN-TVPVESVTQTFYPVADHL--KGGLLEALL 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S +  ++ ++F   K    NL   L  +G S   + GN+ Q  R + L  F+ G  ++M
Sbjct: 237 GSMER-ESVLVFTRTKHRAKNLAKRLGLRGMSATFLQGNMSQNQRQRALDGFRCGDFEIM 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D   + HV NFD P+ AE Y HRIGRTGRAGR G+A +L+ +ED   +  
Sbjct: 296 VATDIAARGIDCDRISHVINFDAPDTAEAYTHRIGRTGRAGRTGEALSLITREDHLVVRD 355

Query: 360 IEKLIEKKVD 369
           IE+++ + VD
Sbjct: 356 IERVLRRSVD 365


>gi|325280488|ref|YP_004253030.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324312297|gb|ADY32850.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
           20712]
          Length = 432

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 144/372 (38%), Positives = 220/372 (59%), Gaps = 5/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +S +++ A+ DAG+ +PTPIQ +  P++    DV GIAQTGTGKT ++++P+L
Sbjct: 1   MTFNELNISKQILMALEDAGFEQPTPIQERAFPVIRSGKDVIGIAQTGTGKTLAYLIPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L    A+   PR L++ PTREL  QV ++ E   +  ++    + GG     Q   + 
Sbjct: 61  MKLH--YAQGNYPRALVIVPTRELVVQVCESVELLTEYMDIRCVGIYGGTNIRTQQAAVY 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGR +D +  G +    I+ +V+DEADR++DMGF+P +++I  +VP   QT
Sbjct: 119 EGVDLLVTTPGRFMDIYMNGIIRTPQIKTVVVDEADRLMDMGFMPQLRSILEVVPEKHQT 178

Query: 181 LLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT +  + +++  FL   P RIE   P++  E +             K  LL+ LL
Sbjct: 179 LLFSATFSTTIAELAAEFLAPEPVRIETGNPTTPVELVTQ-LRYDLPNIQTKINLLKLLL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             ++  +  +IF   KKN   +   L +     +  +H N  Q SR+  L  FKEG  ++
Sbjct: 238 TDKEEFRRVMIFTETKKNADRIVERLGDHWKGELSVLHSNKAQNSRLNALKVFKEGKTRI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MV+SD+AARG+D+ DV HV NFD+P+  E YIHRIGRT RAG+ G A + V +++    +
Sbjct: 298 MVSSDVAARGIDVQDVSHVINFDIPSIPEEYIHRIGRTARAGKEGTAISFVTEKEEPKFE 357

Query: 359 AIEKLIEKKVDW 370
            IEKLI ++V+W
Sbjct: 358 EIEKLIGQQVEW 369


>gi|228474931|ref|ZP_04059660.1| cold-shock DEAD box protein A [Staphylococcus hominis SK119]
 gi|314935968|ref|ZP_07843318.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           hominis subsp. hominis C80]
 gi|228271163|gb|EEK12543.1| cold-shock DEAD box protein A [Staphylococcus hominis SK119]
 gi|313655974|gb|EFS19716.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           hominis subsp. hominis C80]
          Length = 503

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 146/384 (38%), Positives = 231/384 (60%), Gaps = 15/384 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S K V  + + G+ +PTPIQ ++IP  L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDKTVKTLEEMGFKEPTPIQKESIPYTLEGKDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  G++ V+    LIL PTRELA QVA+   ++ +  N+ V  + GG+P + Q K L+R
Sbjct: 63  KV-VGKSGVQ---ALILAPTRELAMQVAEQLREFSRGQNIQVVTVFGGMPIDRQIKALKR 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180
           G  +++ TPGR++DH NR  L  N+I  L++DEAD M++MGFI  ++ I   +P   RQT
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +Q + + F+++P+ ++      +   I+  +  T  +  +K       L 
Sbjct: 179 MLFSATMPKAIQTLVQQFMKSPQIVKTMNNEMSDPQIDEYY--TIVKELEKFDTFTNFLD 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++V
Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALLTKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  I
Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E++ +++       + +L PP  K
Sbjct: 356 EEVNDRR-------MKALRPPHRK 372


>gi|33240544|ref|NP_875486.1| superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33238072|gb|AAQ00139.1| Superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 603

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 232/370 (62%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G S  ++  + + GY +PTPIQ  +IP ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 53  FEGFGFSEALLKTLKNKGYEEPTPIQKASIPELMLGRDLLGQAQTGTGKTAAFALPLL-- 110

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
            E+  ++ R P+ L+L PTRELA QVA++F+ Y + + N+ +  + GG  F +Q   L+R
Sbjct: 111 -ERINSKERNPQVLVLTPTRELAMQVAESFKAYSEGHANINILAVYGGSDFRSQIYSLKR 169

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G ++++ TPGR++DH  +G L  ++++ LV+DEAD ML MGFI  I+ I   +P  RQ +
Sbjct: 170 GVEIIVGTPGRVMDHIRQGTLNQDSLQCLVLDEADEMLRMGFIDDIEWILEQLPNERQMV 229

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++K+S+ +L++P  I +      A+ I   ++    Q S K  +L+++L+ 
Sbjct: 230 LFSATMPPEIRKLSKRYLRDPAEITIKAKKKEAQLIRQHYITV--QNSYKLEVLRRVLE- 286

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  IIF   K   + L  SLE    +V  ++G++ Q  R + +   ++G I ++VA
Sbjct: 287 LNYGEGVIIFARTKAITLKLAESLEASNHNVAVLNGDVPQNLRERTVERLRQGGINILVA 346

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N+D+P  +E Y+HRIGRTGRAGR G+A   ++  +  +++ +E
Sbjct: 347 TDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFISPRERSYLNNLE 406

Query: 362 KLIEKKVDWL 371
           + + + ++ +
Sbjct: 407 RAVGQSIERM 416


>gi|319951788|ref|YP_004163055.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM
           14237]
 gi|319420448|gb|ADV47557.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM
           14237]
          Length = 429

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 229/370 (61%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LG++  ++ A+   GY  PTPIQ K+IP++L+  D+ G+AQTGTGKTA+F +P+L
Sbjct: 1   MTFKELGIAEPILKALTSEGYENPTPIQEKSIPILLKGKDLLGVAQTGTGKTAAFGIPIL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +    + +  R  + L++ PTRELA Q+ ++F  Y +   +   ++ GG+    Q   
Sbjct: 61  HHIYTNNSGIGKRKIKALVVTPTRELAIQIGESFTAYARFTGIKNTVIFGGVKQGKQTDA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G ++LI TPGR+LD  N+G + + ++E +V+DEAD+MLDMGFI  ++ I + +P  R
Sbjct: 121 LRQGVEILIATPGRLLDLMNQGFISLRDLEYVVLDEADQMLDMGFIHDVKKIIAKLPAKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM   + ++S+  L   +++ +    +TAE +E      +     K  LL  L
Sbjct: 181 QSLFFSATMPKTIVELSQKILGEFEQVTIKPEQATAEKVEQAIY--FVPKGDKVKLLVHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +++++  K  ++F   K     +   L+K G +  AIHGN  Q +R   L++FK+G + +
Sbjct: 239 IETKEA-KAVLVFSRTKHGANKIVKLLDKAGINAAAIHGNKSQTARQNALNDFKDGKLTV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI D+  V N+D+PN  E Y+HRIGRTGRA   G A +   +E+  ++ 
Sbjct: 298 LVATDIAARGIDIDDLSLVVNYDLPNVPETYVHRIGRTGRANASGVALSFCDREERAYLK 357

Query: 359 AIEKLIEKKV 368
            I+KLI++ +
Sbjct: 358 DIQKLIKQTI 367


>gi|149178000|ref|ZP_01856597.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
 gi|148843193|gb|EDL57559.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
          Length = 418

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 149/393 (37%), Positives = 234/393 (59%), Gaps = 11/393 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL+ K++  +  AGY  P+PIQ + IP+ +   D  G A+TGTGKTA+F LP+L  
Sbjct: 17  FSQLGLNEKILKDLSKAGYETPSPIQSELIPIAVTGQDCIGQARTGTGKTAAFSLPVLQQ 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  R  ++    LIL PTREL+ QVA    K   + +L++A+L+GG P   Q  +L++G
Sbjct: 77  LDLRRPGMQ---ALILAPTRELSEQVAAEIRKLCTSKSLSIAVLVGGKPVRPQENQLKKG 133

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A + + TPGR++DH NRG L +  +  +V+DEADRMLD+GF P I+ I    P  RQTLL
Sbjct: 134 AQIAVGTPGRVIDHINRGNLQLGTLGFVVLDEADRMLDIGFRPDIEKILRKCPEKRQTLL 193

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+   +++++  ++QNP  I+++    + + I+  ++       +K  LL +LL  Q
Sbjct: 194 LSATLPPPVERLANRYMQNPVMIDLSEDKVSVDAIDQYYITV--DPDRKIKLLSRLL-FQ 250

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  K  I+F   K+    L     K+   V AIHG++ Q  R ++L  F+EG I+L++A+
Sbjct: 251 ERPKQTIVFTRTKRGADKLDRIFSKKLKEVAAIHGDLPQPKRDRVLKKFREGKIRLLIAT 310

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR--AGRHGKAFTLVAKEDIKHIDAI 360
           D+  RG+D+  + H+ NFD+P  +++Y+HRIGR GR  + + G AFT VA ++ + +  I
Sbjct: 311 DVMGRGIDVSGISHIINFDIPEFSDDYVHRIGRVGRLSSDQKGAAFTFVAPDEGEQLTNI 370

Query: 361 EKLIEKKVDWLNGD-LSSLNP--PLEKIDIAQH 390
           E  I   V     D   +  P  P +KI+   H
Sbjct: 371 ENRINHMVKEFRVDEFEAYKPQKPRKKIEKVSH 403


>gi|325684686|gb|EGD26840.1| cold-shock DEAD box protein A [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 478

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 146/385 (37%), Positives = 232/385 (60%), Gaps = 18/385 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+  ++ A+  +G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFTELGLNDNILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  +    + + +++EPTRELA Q  +   + G++ N  V ++ GG     Q + L+
Sbjct: 61  QKLDLDKQEQAI-QAIVIEPTRELAIQTQEELFRLGRDENAKVQVVYGGADIGRQIRALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  ++L+ TPGR+LDH  R  + ++ ++ +V+DEAD MLDMGFI  I++I +      QT
Sbjct: 120 KVPEILVGTPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQYSKKCALLQQL 238
           LLFSATM   +Q + E F+ +P+ +++     TA+ I+  FV      ++   C L+   
Sbjct: 180 LLFSATMPKPIQVLGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLID-- 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +++ D     ++F   K+ V  L   L  +G++   IHG++ Q  RM++L  FKEG + +
Sbjct: 238 VENPDL---AVVFGRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDI 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  V HV+N+D+P   ++Y+HRI   GRAG+ G + T V   +I ++ 
Sbjct: 295 LVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRI---GRAGKSGMSVTFVTPNEIGYMR 351

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLE 383
            IE L +KK       +S L PP +
Sbjct: 352 TIEDLTKKK-------MSPLRPPTD 369


>gi|253682634|ref|ZP_04863431.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873]
 gi|253562346|gb|EES91798.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873]
          Length = 476

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 132/364 (36%), Positives = 229/364 (62%), Gaps = 6/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +  LS +++  +   GY  PT +Q K IP+ L+  D+   +QTG+GKTASF +P  
Sbjct: 1   MNFKEFNLSNEILKTIKMLGYKSPTEVQEKVIPIALKDKDIIVKSQTGSGKTASFGIP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + EK     + P+ LIL PTRELA Q+ ++    G+   +    + G  P   Q  +L+
Sbjct: 59  -VCEKVLLENKKPQVLILTPTRELAVQIKEDISNIGRFKKIKCVAVYGKEPVSIQKNQLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR  DH  +G + +++I  L+IDEAD+ML+MGFI  ++++   +P  R T
Sbjct: 118 QRVHIVVGTPGRTFDHIEKGNMELSDIRYLIIDEADKMLNMGFIDQVEDVIKRLPKDRVT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ ++++K+   ++ NP++IE++  + T + IE  +     +  +K +LL +++ 
Sbjct: 178 MLFSATLEEKIEKLCVKYMNNPEKIEISKKNITTDIIEQEYYE--VESDRKFSLLNKIIY 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + IIFCN K  V ++   ++ +GF   A+HG ++Q+ R++++  FK G    +V
Sbjct: 236 TERP-DSCIIFCNTKAEVGSIAIKMKNKGFDTKALHGGMEQKDRLEVIQEFKRGRFPFLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++ HV N++VP+  E+Y+HRIGRTGRAG  GK+ TLV++ + +   +I
Sbjct: 295 ATDVAARGIDIEEITHVINYEVPSEKESYVHRIGRTGRAGHKGKSITLVSEYENRRFKSI 354

Query: 361 EKLI 364
           E+ I
Sbjct: 355 EEYI 358


>gi|307243618|ref|ZP_07525761.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492987|gb|EFM64997.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
           stomatis DSM 17678]
          Length = 538

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 152/383 (39%), Positives = 235/383 (61%), Gaps = 9/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L +S ++  A+ D GY +P+PIQ + IP +++ HDV G AQTGTGKTASF +P+L  
Sbjct: 6   FNELQVSEEIKRAIEDLGYEEPSPIQAQAIPCMIEGHDVIGQAQTGTGKTASFSIPILEN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL-LIGGIPFEAQNKKLER 121
           +++     R  + ++L PTRELA QV++   K  K       L + GG P + Q K L+ 
Sbjct: 66  IDRDN---RKLQAIVLCPTRELAIQVSEEVRKLAKYMQGIRTLPIYGGQPIDRQIKALKG 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V I TPGR++DH NR  L ++ ++++V+DEAD MLDMGF   I+ I S VP  RQT 
Sbjct: 123 GVQVAIGTPGRVIDHINRKTLKLDQVKMVVLDEADEMLDMGFREDIETILSNVPEERQTA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   + ++++ + ++P  I+V   + T   I+  ++ T  + S K  +L +LL  
Sbjct: 183 LFSATMPKAILELTKKYQKDPVHIKVVRKTLTVSNIKQYYIET--RKSNKLEVLTRLLDV 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  K  ++F N KK    L  SL+ +G+   ++HG++ Q  R  ++  F+ GTI ++VA
Sbjct: 241 YNP-KLTVVFTNTKKGADELVSSLQARGYGADSLHGDLKQVQRDIVMDKFRAGTIDILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI DV  V N+++P   E Y+HRIGRTGRAGR G AF+     +++ +  IE
Sbjct: 300 TDVAARGIDIDDVECVINYELPQDDEYYVHRIGRTGRAGREGIAFSFAFGREMRKLKDIE 359

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
           +  + K+  +  D+ S+N   EK
Sbjct: 360 RYTKSKI--VKHDIPSVNDVEEK 380


>gi|113971754|ref|YP_735547.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113886438|gb|ABI40490.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 622

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 144/367 (39%), Positives = 224/367 (61%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ A+ + GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L  
Sbjct: 8   FRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +        +P+ L+L PTRELA QVA+ F  Y K      V  + GG     Q   L+R
Sbjct: 68  VTSQA----VPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNALKR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L +  ++ LV+DEAD ML MGFI  I+ I    P  RQ  
Sbjct: 124 GPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQRQLA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +++++V+   L++   I +    +T ++IE  FV   +Q++K  AL++ +L+ 
Sbjct: 184 LFSATMPEQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQV-SQHNKLEALVR-VLEV 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++T +  IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++A
Sbjct: 242 ENT-EGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDILIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +GHV N+D+P   E Y+HRIGRTGRAGR G A   V   +++ +  IE
Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360

Query: 362 KLIEKKV 368
           +    ++
Sbjct: 361 RATNSRI 367


>gi|288942738|ref|YP_003444978.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288898110|gb|ADC63946.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
           180]
          Length = 662

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 149/382 (39%), Positives = 224/382 (58%), Gaps = 18/382 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLSP +  AV + GY  PT IQ + IP +L   D+ G AQTGTGKTA+F LPML+ 
Sbjct: 11  FDALGLSPVIAQAVKNLGYESPTAIQSQCIPHLLAGRDLLGQAQTGTGKTAAFALPMLSR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     +R P+ L+L PTRELA QVA+ F++Y  +     V  + GG  +  Q  +L+R
Sbjct: 71  LDPD---LRKPQVLVLTPTRELALQVAEAFQRYATDLKGFNVLPIYGGQGYGLQLSQLKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR++DH  RG L +++I  LV+DEAD ML+MGF   I  I    P  RQ  
Sbjct: 128 NPQVIVGTPGRVMDHIRRGTLALDSIRALVLDEADEMLNMGFAEDIDWIFDQAPAERQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQLL 239
           LFSATM   +++V++  L +P  +++   S T +TIE  HC V  +     K  +L +++
Sbjct: 188 LFSATMPPAIRRVAQTRLVDPVEVKIAANSETVDTIEQHHCIVTRF----HKLDVLTRIM 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +      +IF   K     L   L+  GF+   ++G+++Q  R + +   K+G + ++
Sbjct: 244 ELE-PFDGLLIFVRTKNATTELADKLKAHGFAAEPLNGDMNQEMRERTVERLKQGQLDVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P     Y+HRIGRTGRAGR G+A  LV   +   + +
Sbjct: 303 VATDVAARGLDVERISHVVNYDIPTDPSAYVHRIGRTGRAGRAGRAILLVEPRERGLLKS 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPP 381
           IE++I + +        S+ PP
Sbjct: 363 IERVIRRPI-------PSMEPP 377


>gi|255654809|ref|ZP_05400218.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-23m63]
 gi|296449553|ref|ZP_06891330.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
 gi|296878124|ref|ZP_06902139.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
 gi|296261617|gb|EFH08435.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
 gi|296430877|gb|EFH16709.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
          Length = 537

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 144/367 (39%), Positives = 227/367 (61%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +S  +  A+ + G+ +P+PIQ ++IP +L   DV G AQTGTGKTA+F +P+L  
Sbjct: 6   FEDLPISEGIKKAIAEMGFEEPSPIQAQSIPAILSGKDVIGQAQTGTGKTAAFSIPILET 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++      R  + ++L PTRELA QV+    K  K ++ +    + GG P + Q K L+ 
Sbjct: 66  IDPNN---RSLQAVVLCPTRELAIQVSTEIRKLAKYSHGIKTLPIYGGQPIDRQIKSLKS 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+I TPGR +DH NR  L M+N++++++DEAD MLDMGF   I+ I S +P  RQT 
Sbjct: 123 GVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMILSKIPEERQTT 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   + ++++ + ++P+ I+V     T    +  ++ T +  S K  +L +L+  
Sbjct: 183 FFSATMPRGILELTKRYQKDPEHIKVVRKELTVSNTKQYYIETRS--SNKLEVLCRLVDV 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D  K  ++FCN K+    L   L+ +G+   A+HG++ Q  R  ++  F+ GTI ++VA
Sbjct: 241 YDP-KLSVVFCNTKRKADELVGDLQARGYFADALHGDLKQTQRDIVMDKFRNGTIDILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G +FT V  ++++ +  IE
Sbjct: 300 TDVAARGIDVDDVECVFNYDLPQDEEYYVHRIGRTGRAGREGMSFTFVFGKEMRKMKDIE 359

Query: 362 KLIEKKV 368
           +  + K+
Sbjct: 360 RYTKSKL 366


>gi|317125686|ref|YP_004099798.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043]
 gi|315589774|gb|ADU49071.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM
           43043]
          Length = 562

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 150/421 (35%), Positives = 237/421 (56%), Gaps = 26/421 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FAD  + P+++ A+ + G + P PIQ  T+P+ L  HD+ G A+TGTGKT  F +PML +
Sbjct: 17  FADFPVHPEIISALAEWGIIHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGVPMLNS 76

Query: 62  ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           ++  G A      R   P+ L + PTRELA QV+ + E+ G++  + V  + GG  +E Q
Sbjct: 77  VVAPGDAGFDALPRPGKPQALAVAPTRELAVQVSGDLERAGRHRGIRVLTVYGGRAYEPQ 136

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG +V++ TPGR++D   +G L ++  +++V+DEAD MLD+GF+P ++ + SL P
Sbjct: 137 VDALRRGVEVVVGTPGRLIDLAKQGHLDLSQAKVVVLDEADEMLDLGFLPDVETLMSLTP 196

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEV----NTPSSTAETIEHCFVATYAQYSKK 231
            +RQT+LFSATM   +  ++  ++  P  I      N  + T + +E      +A    K
Sbjct: 197 ASRQTMLFSATMPGAIVTLARRYMTQPTHIRAMGDENENAHTVKAVEQFVYRAHAL--DK 254

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             +L ++LQ++D     IIF   K+    +   L ++GF+  AIHG++ Q +R + L  F
Sbjct: 255 VEMLSRMLQAKDRGLT-IIFSRTKRTAAKVADELGERGFAAAAIHGDLGQGAREQALRAF 313

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++VA+D+AARG+D+ +V HV NF  P   + Y+HRIGRT RAG  G A T V  
Sbjct: 314 RNGKVDVLVATDVAARGIDVDNVTHVINFQCPEDEKTYLHRIGRTARAGNTGVAVTFVDW 373

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           +D+        LI K +D        L  P  +   +   H   +  IP ++ GF RR +
Sbjct: 374 DDLHRW----ALINKTLD--------LGIPEPQETYSNSEHLYGDLGIPAEAKGFLRRSE 421

Query: 412 N 412
            
Sbjct: 422 Q 422


>gi|291277508|ref|YP_003517280.1| DEAD box helicase family protein [Helicobacter mustelae 12198]
 gi|290964702|emb|CBG40557.1| DEAD box helicase family protein [Helicobacter mustelae 12198]
          Length = 513

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 146/371 (39%), Positives = 226/371 (60%), Gaps = 14/371 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  V+  VLDAG+  PTPIQ + IP +LQ  DV   AQTGTGKTA+F LP+L +
Sbjct: 19  FENLGLSKTVLKGVLDAGFRMPTPIQEQAIPAILQERDVIAQAQTGTGKTAAFTLPILEM 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   ++       LI+ PTREL  QV+D   K G+  N+    + GG   + Q + L + 
Sbjct: 79  LHHNQS----IEALIITPTRELTMQVSDEIYKLGRPKNIKTVCVYGGQSIKRQCELLAKN 134

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH   G+L       +V+DE+D MLDMGF+  I+ I + +P   Q LL
Sbjct: 135 PQIMVATPGRLLDHLKSGRLDNFTPRFVVLDESDEMLDMGFLDDIEEIFNYLPNNIQVLL 194

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE----HCFVATYAQYSKKCALLQQL 238
           FSATM + ++K+++  L NP  I++ TP++    ++    +C +       ++   L ++
Sbjct: 195 FSATMPEAIKKLAQRILHNPIHIKI-TPTANMTNLDVTQYYCVIGE----GERQEALMRI 249

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +++  K+ IIF   KK    L + LE +G+    +HG+++QR R   + +FK+   ++
Sbjct: 250 LDTENIYKS-IIFTRTKKEADGLYNFLEARGYKAGTLHGDMEQRDRRAAILDFKKCHYKI 308

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RGLDI DV HVFN+ +P  +E Y+HRIGRTGRAG+ GKA T V   + K + 
Sbjct: 309 LVATDVASRGLDISDVSHVFNYHIPTNSEVYVHRIGRTGRAGKKGKAITFVTPLEFKDLK 368

Query: 359 AIEKLIEKKVD 369
            I++ +  K++
Sbjct: 369 KIQEDVGSKLE 379


>gi|325142563|gb|EGC64962.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           961-5945]
 gi|325198512|gb|ADY93968.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           G2136]
          Length = 462

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 219/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIMASAQTGSGKTAAFLLPTLQK 64

Query: 63  LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPTDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    ++P+ IEV       +  E        ++  K  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 361 IEKYINRKL 369


>gi|126698341|ref|YP_001087238.1| putative ATP-dependent RNA helicase [Clostridium difficile 630]
 gi|254974380|ref|ZP_05270852.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-66c26]
 gi|255091773|ref|ZP_05321251.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP
           107932]
 gi|255099876|ref|ZP_05328853.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-63q42]
 gi|255305765|ref|ZP_05349937.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC
           43255]
 gi|255313504|ref|ZP_05355087.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-76w55]
 gi|255516192|ref|ZP_05383868.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-97b34]
 gi|255649288|ref|ZP_05396190.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-37x79]
 gi|260682458|ref|YP_003213743.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260686057|ref|YP_003217190.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
 gi|306519386|ref|ZP_07405733.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-32g58]
 gi|115249778|emb|CAJ67595.1| putative ATP-dependent RNA helicase [Clostridium difficile]
 gi|260208621|emb|CBA61352.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260212073|emb|CBE02663.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
          Length = 537

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 144/367 (39%), Positives = 227/367 (61%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +S  +  A+ + G+ +P+PIQ ++IP +L   DV G AQTGTGKTA+F +P+L  
Sbjct: 6   FEDLPISEGIKKAIAEMGFEEPSPIQAQSIPAILSGKDVIGQAQTGTGKTAAFSIPILET 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++      R  + ++L PTRELA QV+    K  K ++ +    + GG P + Q K L+ 
Sbjct: 66  IDPNN---RSLQAVVLCPTRELAIQVSTEIRKLAKYSHGIKTLPIYGGQPIDRQIKSLKS 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+I TPGR +DH NR  L M+N++++++DEAD MLDMGF   I+ I S +P  RQT 
Sbjct: 123 GVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMILSKIPEERQTT 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   + ++++ + ++P+ I+V     T    +  ++ T +  S K  +L +L+  
Sbjct: 183 FFSATMPRGILELTKRYQKDPEHIKVVRKELTVSNTKQYYIETRS--SNKLEVLCRLVDV 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D  K  ++FCN K+    L   L+ +G+   A+HG++ Q  R  ++  F+ GTI ++VA
Sbjct: 241 YDP-KLSVVFCNTKRKADELVGDLQARGYFADALHGDLKQTQRDIVMDKFRNGTIDILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G +FT V  ++++ +  IE
Sbjct: 300 TDVAARGIDVDDVECVFNYDLPQDEEYYVHRIGRTGRAGREGMSFTFVFGKEMRKMKDIE 359

Query: 362 KLIEKKV 368
           +  + K+
Sbjct: 360 RYTKSKL 366


>gi|115437436|ref|NP_001043295.1| Os01g0549400 [Oryza sativa Japonica Group]
 gi|143455968|sp|Q5JKF2|RH40_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 40
 gi|57899403|dbj|BAD88050.1| putative ATP-dependent RNA helicase DB10 [Oryza sativa Japonica
           Group]
 gi|113532826|dbj|BAF05209.1| Os01g0549400 [Oryza sativa Japonica Group]
 gi|125570769|gb|EAZ12284.1| hypothetical protein OsJ_02174 [Oryza sativa Japonica Group]
          Length = 792

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 144/380 (37%), Positives = 227/380 (59%), Gaps = 8/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G  P+++  +  AG+  PTPIQ ++ P+ LQ  DV  IA+TG+GKT  ++LP    
Sbjct: 152 FETGGFPPEILKEIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLPGFMH 211

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++ +   R  P  L+L PTRELA Q+ +   K+G++  ++   L GG P   Q + L+R
Sbjct: 212 IKRLQNNPRSGPTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRDLDR 271

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR+ D     ++ +  +  LV+DEADRMLDMGF P I+ I   +P  RQTL
Sbjct: 272 GVDVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRRQTL 331

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY---SKKCALLQQL 238
           +++AT   E+++++E+ L +P ++ +    S  E + +  +    +    S+K   L+Q+
Sbjct: 332 MYTATWPKEVRRIAEDLLVHPVQVTIG---SVDELVANSAITQNVELITPSEKLRRLEQI 388

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+SQD+    +IFC  K+    L  +L +Q F   AIHG+  Q  R K+LS+F+ G   +
Sbjct: 389 LRSQDSGSKVLIFCTTKRMCDQLARTLTRQ-FGASAIHGDKSQSEREKVLSHFRSGRSPI 447

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G A+T    +D K+  
Sbjct: 448 LVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQDSKYAA 507

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + K++E     +  DL+ +
Sbjct: 508 DLIKILEGANQRVPRDLADM 527


>gi|218248985|ref|YP_002374356.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp.
           PCC 8801]
 gi|257062070|ref|YP_003139958.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8802]
 gi|218169463|gb|ACK68200.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8801]
 gi|256592236|gb|ACV03123.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8802]
          Length = 485

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 216/369 (58%), Gaps = 5/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGLS      +   G+  PT IQ K IPL+L+ HD+ G +QTGTGKTA++ LP+L
Sbjct: 3   ISFQSLGLSETRANQLEAIGFTSPTEIQQKAIPLLLEGHDILGQSQTGTGKTAAYSLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LIL PTRELA QVA   + +     L +  + GG   E Q + LE
Sbjct: 63  EQVDVKNPNVQ---ALILTPTRELAQQVALALKDFSTERRLYILTVYGGQSIERQIRSLE 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++D  +R KL    +   V+DEAD ML MGFI  ++ I    P TR T
Sbjct: 120 RGVQIVVGTPGRVIDLLDRKKLSFEGLRWAVLDEADEMLSMGFIDDVKKILKQTPDTRST 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM  E++++   FL++P  + V  P +    IE         +SK  AL  Q + 
Sbjct: 180 ACFSATMPREIRELVNQFLKSPVTVAVEQPQAAPSKIEQHLYNVPRGWSKLKAL--QPIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  ++ IIF   K+    L   L++ G SV   HGN+ Q  R +++  F+EG I+L+V
Sbjct: 238 ELEAPESAIIFVRTKQTAAELTCKLQEAGQSVDEYHGNLSQSQRERLVYRFREGKIKLVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++ HV N+D+P+ AE YIHRIGRTGRAG+ G A +LV   D + I  I
Sbjct: 298 ATDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRMIKQI 357

Query: 361 EKLIEKKVD 369
           E+ + ++++
Sbjct: 358 ERKLRQQLE 366


>gi|114046038|ref|YP_736588.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113887480|gb|ABI41531.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 622

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 144/367 (39%), Positives = 224/367 (61%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ A+ + GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L  
Sbjct: 8   FRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +        +P+ L+L PTRELA QVA+ F  Y K      V  + GG     Q   L+R
Sbjct: 68  VTSQA----VPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNALKR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L +  ++ LV+DEAD ML MGFI  I+ I    P  RQ  
Sbjct: 124 GPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQRQLA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +++++V+   L++   I +    +T ++IE  FV   +Q++K  AL++ +L+ 
Sbjct: 184 LFSATMPEQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQV-SQHNKLEALVR-VLEV 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++T +  IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++A
Sbjct: 242 ENT-EGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +GHV N+D+P   E Y+HRIGRTGRAGR G A   V   +++ +  IE
Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360

Query: 362 KLIEKKV 368
           +    ++
Sbjct: 361 RATNSRI 367


>gi|49475813|ref|YP_033854.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
 gi|49238621|emb|CAF27864.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
          Length = 460

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 154/366 (42%), Positives = 225/366 (61%), Gaps = 8/366 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  LGLS  +V  +  AG  KP PIQ + IP++L+ HD+ GIAQTG+GKT +F LP+L+ 
Sbjct: 9   FTKLGLSALLVKNLTIAGMSKPKPIQEQAIPMMLKGHDILGIAQTGSGKTLAFSLPILSQ 68

Query: 62  ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL  G  R  +  R LIL PTRELA Q+ +      K  +L+  L+ GG+    Q K++E
Sbjct: 69  ILALGDKRFPKTARALILAPTRELAVQIDETIRAVAKGTHLSTCLIFGGVSRLKQIKRME 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+LI TPGR+ D      + ++    L++DEADRMLDMGFI  I++I  L+   RQT
Sbjct: 129 AGVDILIATPGRLRDLIREKYVDLSQSRFLILDEADRMLDMGFIHDIRHIVKLLHQVRQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  +++  L +P +IEV+   +TA  I            +K  +L +LL 
Sbjct: 189 ALFSATMPKEITTLAKCLLNDPVKIEVSPQGTTAAEIAQKLYCV--PTCEKKNVLGKLLT 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D + + I+F   K     +  +L  +G+SV  IHGN  Q +R   L  F+E +++++V
Sbjct: 247 NPDFV-SVIVFTRTKYCADAVTRNLASRGYSVATIHGNKSQSARQSALKAFRERSVRILV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH--ID 358
           A+D+AARG+DIP + HV N+D+P+ AE+Y+HRIGRTGR G  G+A TL   E ++   + 
Sbjct: 306 ATDIAARGIDIPGISHVINYDLPDEAESYVHRIGRTGRNGASGEALTLF-DEGVEQMRLR 364

Query: 359 AIEKLI 364
           A+E+LI
Sbjct: 365 AVERLI 370


>gi|326202741|ref|ZP_08192609.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325987325|gb|EGD48153.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 414

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 149/371 (40%), Positives = 225/371 (60%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           M F +L L   +  A++  GY  PT IQ +TIPL+L+  D+ G AQTGTGKTA+F +P  
Sbjct: 1   MLFDELNLISPIQKALMAEGYTAPTDIQKQTIPLLLEGKDLVGCAQTGTGKTAAFAIPIL 60

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            ML++ ++    +R  + LIL PTRELA Q+ ++F  YG+   L  +++ GG+  + Q  
Sbjct: 61  QMLSVEQRDSKELRRIKALILTPTRELAVQIGESFTVYGQYLGLKNSVIFGGVSQKPQTD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI TPGR+LD  N+  + +++I+  V+DEADRMLDMG +  ++ I S +P  
Sbjct: 121 ALEEGVDILIATPGRLLDLINQKYINLHHIKFFVLDEADRMLDMGLVADVKRIISHLPKI 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSATM  ++ K+ ++ L +P ++ V   SST + IE    A Y    K   LL  
Sbjct: 181 RQTMLFSATMPPDVSKLIDSILTDPVKVAVTPISSTVDIIEQ---AVYFVGKKDKKLLLT 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++ + ++F   K     +   L K      AIHGN  Q +R + L+NFK+   +
Sbjct: 238 QLLKNKSITSALVFSRTKHGADKIVKELAKVRIHAEAIHGNKSQGARQRALNNFKDKKTR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+  + +V N+D+PN  E Y+HRIGRTGRAG  G A +    ++  ++
Sbjct: 298 VLVATDIAARGIDVEGLSYVINYDLPNIPETYVHRIGRTGRAGLGGVALSFCDADEKPYL 357

Query: 358 DAIEKLIEKKV 368
             IEKLI K +
Sbjct: 358 KDIEKLISKSI 368


>gi|119775874|ref|YP_928614.1| ATP-dependent RNA helicase SrmB [Shewanella amazonensis SB2B]
 gi|119768374|gb|ABM00945.1| superfamily II DNA and RNA helicase-like protein [Shewanella
           amazonensis SB2B]
          Length = 613

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 218/368 (59%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P+++ ++   G+  PT IQ  TIPL +++ D+   A TGTGKTASF+LP L
Sbjct: 1   MLFEDFQLDPELLESLKAMGHNTPTTIQRMTIPLAMEQRDILARAPTGTGKTASFLLPAL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +++  R R   PR L+L PTRELA+Q+         N  L + L+ GG+P+  Q + L
Sbjct: 61  QHLIDFPRRRPGQPRVLVLTPTRELASQIHRYASHLATNLELDIKLITGGVPYGPQEEML 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   D+L+ TPGR+L++ ++G      +E+LVIDEADRMLDMGF   ++ I       +Q
Sbjct: 121 KSNVDILVATPGRLLEYLDKGHFSAELVEVLVIDEADRMLDMGFGEVVKTIAVEASGRKQ 180

Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            +LFSAT+    +   +   L  P  +E   P S    I H ++        K ALL  L
Sbjct: 181 AMLFSATLEGGGVGSFARELLNEPMFVESEPPRSEKAKI-HQWIHLADDKDHKFALLTHL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ Q+ +K  I+FC  +  V +L   L++ G +   + G++DQ+ R + L  F +G + +
Sbjct: 240 LK-QEEVKRAIVFCKTRDVVASLEGQLQQAGIACAFMRGDMDQKKRFQALGRFTKGEVNV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI D+ HV NFD+P  A+ Y+HRIGRTGRAG  G A +LV   D++ + 
Sbjct: 299 LLATDVAARGIDIEDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDMRILG 358

Query: 359 AIEKLIEK 366
            +E+ IE+
Sbjct: 359 KVERYIEQ 366


>gi|325283382|ref|YP_004255923.1| DEAD/DEAH box helicase domain-containing protein [Deinococcus
           proteolyticus MRP]
 gi|324315191|gb|ADY26306.1| DEAD/DEAH box helicase domain protein [Deinococcus proteolyticus
           MRP]
          Length = 612

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 143/365 (39%), Positives = 218/365 (59%), Gaps = 9/365 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +L ++P +   + + G  + +PIQ +++P  LQ  D+ G A+TGTGKT +F LP++
Sbjct: 1   MNFNEL-IAPALAARLAERGITEASPIQAESLPHTLQGRDLIGRARTGTGKTLAFALPII 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE  R R R+PR +++ PTRELA QVA  FE+ G+   LTV  + GG  +  Q   L 
Sbjct: 60  QGLEPSRERSRLPRAIVVAPTRELARQVAAEFEQTGRE--LTVLTVYGGAAYGPQETALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR++DH  RG L +  ++  V+DEAD ML +GF   I+ I    P  RQT
Sbjct: 118 RGVDVVVGTPGRLIDHLERGNLDLQEVKYAVLDEADEMLSVGFADAIETILKTTPEGRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT+T E++++S  +L +P  +++     S  A+T+EH  V        +  +L  L
Sbjct: 178 LLFSATLTPEIRRLSNKYLNDPLVVDMVGEGKSQAAQTVEHLKVRV---GRSRTRVLADL 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   +  K  I+F   K+    L   L  +GF   A+HG++ Q  R + L +F+ G   +
Sbjct: 235 LTVYNPEK-AIVFTRTKRETDELALELIHRGFEAEALHGDLAQNQRERALGSFRSGRTSI 293

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIP+V  V  + +P   E+Y+HR GRTGRAGR G A  +    + + I+
Sbjct: 294 LVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRAGTAIIMYGDREQRDIN 353

Query: 359 AIEKL 363
            +E++
Sbjct: 354 GLERV 358


>gi|220929887|ref|YP_002506796.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
 gi|220000215|gb|ACL76816.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
           H10]
          Length = 565

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 143/363 (39%), Positives = 230/363 (63%), Gaps = 7/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL LS +V  A++D G+ + TPIQ ++IP +L+ +D+ G AQTGTGKT +F +P +
Sbjct: 4   LSFKDLTLSDEVQRAIVDMGFEEATPIQSQSIPYILEGNDLIGQAQTGTGKTCAFGIPAV 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
              EK   ++   + L+L PTRELA Q  +      K  + + +  + GG P + Q   L
Sbjct: 64  ---EKIDPQIDSIQVLVLSPTRELAIQSCEELRNVLKYKDGIRILPVYGGQPIDRQIMAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   ++I TPGR++DH  R  + + +++++V+DEAD ML+MGF   I  I   VP  RQ
Sbjct: 121 KKRPQIIIGTPGRVMDHMRRRTIKLESLKMIVLDEADEMLNMGFREDIDTILEKVPEDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  E+ ++++ + +NP  I++     T  +IE  ++    + S K  +L +L+
Sbjct: 181 TILFSATMPKEILELTKKYQKNPVHIKIAHKELTVPSIEQYYLE--VKESAKLEVLSRLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + D +K  ++FCN KK V  L  SL+ +GFS  A+HG++ Q  R K+++ F++G   ++
Sbjct: 239 DTND-IKLSLVFCNTKKRVDELTASLQSRGFSAEALHGDMRQEHRDKVMNLFRKGNFDIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+ DV  VFN+D+PN  E Y+HRIGRTGRAGR GKAFT +   ++  +  
Sbjct: 298 IATDVAARGIDVDDVEAVFNYDLPNDDEYYVHRIGRTGRAGRTGKAFTFIYGREMYKLRD 357

Query: 360 IEK 362
           I++
Sbjct: 358 IQR 360


>gi|257790993|ref|YP_003181599.1| DEAD/DEAH box helicase domain-containing protein [Eggerthella lenta
           DSM 2243]
 gi|325830863|ref|ZP_08164247.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
 gi|257474890|gb|ACV55210.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
 gi|325487270|gb|EGC89713.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
          Length = 506

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 141/366 (38%), Positives = 220/366 (60%), Gaps = 4/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS + + AV   GY  PTP+Q + IPL L+  D+   A+TGTGKTA+F LP L  
Sbjct: 4   FNELGLSDQALEAVARLGYEAPTPVQEQAIPLALEGRDLIAAAKTGTGKTAAFSLPSLDR 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +   + P  L++ PTRELA Q+ +       + +  +  ++GG+ +  Q  KL+ G
Sbjct: 64  LGHAKGG-QGPLMLVVTPTRELAQQIGEVCTAIAASTHHRILTVVGGLSYTPQINKLKHG 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI TPGR++D   +G + + ++E+LV+DEADRMLDMGF P ++ I    P +RQTLL
Sbjct: 123 VDILIATPGRLVDLMEQGAVRLGDVEVLVLDEADRMLDMGFWPAMKKIIGATPASRQTLL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   ++      L +P  +E+     TA+T+E   V  +   + K ALL+ +L  +
Sbjct: 183 FSATIDASIKNSVGKLLHDPAFVEIAHKGETADTVEQYIV--HVAQTLKPALLKAVLAEK 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   +    + C  L++ G++  AIH +  Q  R + L NF  G   ++VA+
Sbjct: 241 GSDRV-IVFARTRSRADSTCRRLKRAGYTAEAIHSDRSQAQRRRALDNFAAGKTGVLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ ARG+D+ +V +V N+D+P + E+Y+HRIGRTGRAG  G A + V+ E    +  IEK
Sbjct: 300 DVLARGIDVEEVDYVVNYDLPTQPEDYVHRIGRTGRAGAAGFAVSFVSPETADALRDIEK 359

Query: 363 LIEKKV 368
           LI++ +
Sbjct: 360 LIKRPI 365


>gi|95928576|ref|ZP_01311323.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
 gi|95135366|gb|EAT17018.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
          Length = 587

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 231/372 (62%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LG++  ++ A+ D GY +P+PIQ ++IP++ + H++ G AQTGTGKTA+F LP+L 
Sbjct: 5   DFSALGIASPLLQALTDLGYQQPSPIQEQSIPILNEGHNLLGTAQTGTGKTAAFGLPLLG 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++  +   + P+ L+L PTRELA QV++  + + K    + V  + GG P   Q K L 
Sbjct: 65  KIDPSK---KYPQMLVLAPTRELAIQVSEALQSFAKYLPKVKVLAVYGGQPMYQQLKALH 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  V++ TPGRI+DH  R  L +  I  +V+DEAD ML MGFI  ++ I    P   Q 
Sbjct: 122 DGVQVVVGTPGRIMDHMERKSLRLEQISAVVLDEADEMLRMGFIEDVETILGATPPRCQC 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   +++V+E +L + + +++ + +ST + IE  ++   A  ++K  +L +L++
Sbjct: 182 ALFSATMPPAIRRVAERYLGDAQEVQIASRTSTVDQIEQRYLMLRA--NQKFDVLTRLIE 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +Q+ +   I+F   K     L   LE +G++   ++G++ Q+ R + +   K G++ +++
Sbjct: 240 AQE-IDGTIVFVRTKTATTELAERLEARGYNAAPLNGDLSQQVRERTIGRLKNGSLDIVI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HVFN+D+P   E YIHRIGRTGRAGR G A   V  ++ + + +I
Sbjct: 299 ATDVAARGLDVERISHVFNYDIPFDTEAYIHRIGRTGRAGRTGTAILFVTPQERRLLKSI 358

Query: 361 EKLIEKKVDWLN 372
           E+  ++ +  ++
Sbjct: 359 ERATKRDIKPID 370


>gi|304387310|ref|ZP_07369503.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis ATCC 13091]
 gi|304338693|gb|EFM04810.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis ATCC 13091]
          Length = 462

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 219/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIMASAQTGSGKTAAFLLPTLQK 64

Query: 63  LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    ++P+ IEV       +  E        ++  K  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 361 IEKYINRKL 369


>gi|224418675|ref|ZP_03656681.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter
           canadensis MIT 98-5491]
 gi|253826788|ref|ZP_04869673.1| ATP-dependent RNA helicase DeaD [Helicobacter canadensis MIT
           98-5491]
 gi|313142197|ref|ZP_07804390.1| ATP-dependent RNA helicase [Helicobacter canadensis MIT 98-5491]
 gi|253510194|gb|EES88853.1| ATP-dependent RNA helicase DeaD [Helicobacter canadensis MIT
           98-5491]
 gi|313131228|gb|EFR48845.1| ATP-dependent RNA helicase [Helicobacter canadensis MIT 98-5491]
          Length = 505

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 150/369 (40%), Positives = 219/369 (59%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+ GL  KV+  + +AG+ +P+PIQ + IP++L   DV   AQTGTGKTA+F LP++  
Sbjct: 11  FAEFGLKSKVLKGIDEAGFKEPSPIQKEVIPVILDGLDVIAQAQTGTGKTAAFALPLINE 70

Query: 63  LE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   G   V     LI+ PTREL  Q+ D   K GK   +    L GG P   Q + LE+
Sbjct: 71  LRHDGSIEV-----LIVAPTRELVMQIGDEVFKLGKYNKVRTVSLFGGQPIRRQIELLEK 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH   G+L   +  ++V+DE+D MLDMGF+  I+ I + +   RQTL
Sbjct: 126 KPQIVIATPGRLLDHLRNGRLKDFDPRVVVLDESDEMLDMGFLDDIEEIFTYLSSDRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++ +++  L NPK I+V    +T + I   +     Q  +   +  +L+ S
Sbjct: 186 LFSATMPTPIKHLAQKILHNPKLIKVTPSDTTNQDISQRYYIINEQEREDAIV--RLIDS 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   K  IIF   KK    LC  L  +G+   A+HG+++QR R K +  FK+ +I ++VA
Sbjct: 244 EMPSK-AIIFTRMKKEADLLCERLVNRGYKAGALHGDMEQRERQKSIKAFKDSSINVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HVFNF +P   E+Y+HRIGRTGRAG+ G A TL    + K +  I+
Sbjct: 303 TDIAARGLDISGVSHVFNFHIPLNPESYVHRIGRTGRAGKKGVAITLATPLEFKELRRIK 362

Query: 362 KLIEKKVDW 370
           +  + K++ 
Sbjct: 363 ENTKAKIEL 371


>gi|313157396|gb|EFR56819.1| putative ATP-dependent RNA helicase RhlE [Alistipes sp. HGB5]
          Length = 473

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 149/378 (39%), Positives = 230/378 (60%), Gaps = 5/378 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ AV + GYV PTPIQ + IP  L+  D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MTFKELNLIEPIMHAVAEKGYVTPTPIQEQAIPPALEGRDLMGCAQTGTGKTAAFTLPIL 60

Query: 61  TILE-KGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L  + R + R P + L+L PTRELA Q+ +    Y +  +L   ++ GG+    Q   
Sbjct: 61  QLLSARPRTKGRRPIKALVLTPTRELAIQIDECCRDYARYTDLRHCVIFGGVNQRPQVDA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RG D+L+ TPGR+LD   +G + +++I   V+DEADRMLDMGFI  I+ I  L+P  R
Sbjct: 121 LQRGVDLLVATPGRLLDLIGQGYVSLSDIRFFVLDEADRMLDMGFIHDIKRILPLLPKER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM  ++  ++ + L +P  + V  P+S  ETI    +  +A+ ++K  LL  L
Sbjct: 181 QTLFFSATMPSDIVTLANSMLHDPVHVTVTPPASVVETISQSVM--FAEKAEKKDLLISL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ + +  + ++F   K     +   L K G    AIHG+  Q +R + +++F+ G  ++
Sbjct: 239 LRER-SEGSVLVFSRTKHGADRIARILTKAGIEGRAIHGDKSQGARERAMNDFRAGRCRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI ++  V N+D+P  AE Y+HRIGRTGRAG  G A    ++++   + 
Sbjct: 298 LIATDIAARGIDISELPLVINYDLPEVAETYVHRIGRTGRAGHDGTAIAFCSEDERPLLK 357

Query: 359 AIEKLIEKKVDWLNGDLS 376
            I+KL    +D  +G L+
Sbjct: 358 DIQKLTGLVLDPDSGRLT 375


>gi|296087640|emb|CBI34896.3| unnamed protein product [Vitis vinifera]
          Length = 1180

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 143/354 (40%), Positives = 217/354 (61%), Gaps = 8/354 (2%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-PR 74
           V  AG+  PTPIQ ++ P+ LQ  D+  IA+TG+GKT  +++P    L++ R   +M P 
Sbjct: 37  VYSAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRNNPQMGPT 96

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTRELA Q+ D   K+G++  L+   L GG P   Q + L+RGAD+++ TPGR+ 
Sbjct: 97  VLVLSPTRELATQIQDEAVKFGRSSRLSCTCLYGGAPKGPQLRDLDRGADIVVATPGRLN 156

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D     ++ +  +  LV+DEADRMLDMGF P I+ I   VP  RQTL+++AT   E++K+
Sbjct: 157 DILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRKI 216

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLLQSQDTMKNGIIF 251
           + + L NP ++ +    +  E + +  +  Y +   Y +K   L+Q+L+SQ+     IIF
Sbjct: 217 AADLLVNPVQVNI---GNVDELVANKAITQYVEVLPYMEKHKRLEQILRSQEPGSKIIIF 273

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           C+ KK    L  +L +  F   AIHG+  Q  R  +L+ F+ G   ++VA+D+AARGLDI
Sbjct: 274 CSTKKMCDQLARNLTRP-FGAAAIHGDKSQGERDYVLNQFRTGRSPVLVATDVAARGLDI 332

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
            D+  V N+D P   E+Y+HRIGRTGRAG  G A+T  A++D K+   + K++E
Sbjct: 333 KDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFAEQDAKYASDLVKVLE 386


>gi|325970751|ref|YP_004246942.1| DEAD/DEAH box helicase [Spirochaeta sp. Buddy]
 gi|324025989|gb|ADY12748.1| DEAD/DEAH box helicase domain protein [Spirochaeta sp. Buddy]
          Length = 622

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 146/362 (40%), Positives = 217/362 (59%), Gaps = 7/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61
           FADLGLS + + A+   G+ +PT IQ   IPL+L+   DV G AQTGTGKTA+F LP+L 
Sbjct: 7   FADLGLSAQTIAAIKAKGFEEPTKIQSACIPLLLKDQVDVIGQAQTGTGKTAAFGLPILE 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I++    +V+    LIL PTRELA Q A+       +  L +A + GG   E Q +KL R
Sbjct: 67  IVDPSLYQVQ---ALILAPTRELAVQNAEEINSLKGDRRLEIAAVYGGASMELQLRKLRR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGRILDH  RG L + +++ +V+DEAD MLDMGFI  I+ +    P  ++ L
Sbjct: 124 GVHVVVGTPGRILDHLRRGSLHLEHLKFVVLDEADEMLDMGFIEDIEEVLKQTPAEKRML 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   +Q+++E F+ N + +++   + T+   +  +V    + S K   L +++  
Sbjct: 184 CFSATMPQPIQRLAERFMHNAQVVKIQQDTMTSNLTDQIYVEV--KESDKLEALTRIIDM 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++    GIIFC  K     +   L  +G+    +HG++ Q+ R  IL   +E +I ++VA
Sbjct: 242 EENF-YGIIFCRTKVQCDEVGRKLMDRGYDAEPLHGDLSQKQRELILHKMRERSISIIVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI D+ HV NF +P   + YIHR+GRTGRAG+ G A T VA  + K    I+
Sbjct: 301 TDVAARGIDISDLTHVINFSLPEDPDAYIHRVGRTGRAGKTGIAITFVAPREFKRFSFIK 360

Query: 362 KL 363
            +
Sbjct: 361 NV 362


>gi|301168896|emb|CBW28490.1| ATP-dependent RNA helicase [Haemophilus influenzae 10810]
          Length = 613

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 230/369 (62%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L  
Sbjct: 7   FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLLAQ 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121
           ++      + P+ L++ PTRELA QVAD  E++ K    T +  L GG  ++ Q + L++
Sbjct: 67  IDPSE---KHPQMLVMAPTRELAIQVADACEQFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   QT 
Sbjct: 124 GAQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240
           LFSATM + ++++++ F+ +P+ +++   +  A  I+  C+   Y    +K   L + L+
Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++V
Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 361 EKLIEKKVD 369
           E L++K ++
Sbjct: 360 EHLMKKGIN 368


>gi|257141454|ref|ZP_05589716.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264]
          Length = 465

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 153/392 (39%), Positives = 226/392 (57%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A++G+GKTA+F L +L  
Sbjct: 10  FSALPLTPATLANLAQLGYTVMTPIQAASLPIALAGHDLITHAKSGSGKTAAFSLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    L+L PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 70  LDARRFDVQ---ALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  L P TRQTL
Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL+NPK +++      ++  +  +  T  +      LL +  + 
Sbjct: 187 LFSATYPDGIAKLSQQFLRNPKEVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLKHYRP 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 247 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 362

Query: 362 KLIEKKVDW-----LNGDLSS-LNPPLEKIDI 387
           + + + V+W     L  D +  L PP+E + I
Sbjct: 363 QALGRDVEWHPLAELKADGNEPLLPPMETLQI 394


>gi|255034017|ref|YP_003084638.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254946773|gb|ACT91473.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 590

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 142/368 (38%), Positives = 229/368 (62%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL+  ++ A+ + G+ KP+PIQ + IP VLQ  DV G AQTGTGKTA+F +P+L  
Sbjct: 9   FEELGLNENILKALQEMGFEKPSPIQAQGIPAVLQGSDVIGQAQTGTGKTAAFGIPVLER 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++     V+    LIL PTRELA QV++   +  K    + +  + GG   + Q + L++
Sbjct: 69  IDTSSNAVQ---ALILCPTRELAVQVSEELGRLSKFMRGVRIEAIYGGDSIDRQIRSLKK 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH  R  L  + + ++V+DEAD MLDMGF   I++I + +P  RQT+
Sbjct: 126 GVHIVVGTPGRVMDHMERRTLKFDEVRMMVLDEADEMLDMGFREDIESILADMPEDRQTI 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM+  +  +++ FL +P  I+V     T + IE  +     Q   K  ++ +L+  
Sbjct: 186 LFSATMSKPIMSITKRFLNDPTLIKVVRNELTNQNIEQVYFEVKPQ--AKVEVMTRLIDM 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +K+ ++FCN K+ V  +   L+ +G++   IHG++ Q+ R  ++S FK G   ++VA
Sbjct: 244 HH-IKSLLVFCNTKRKVDEIVEDLQLRGYASEGIHGDLRQQQRSNVMSKFKAGVTTILVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+  +  V N+D+P   E Y+HRIGRTGRAG  GKAF+LVA+++   + +IE
Sbjct: 303 TDVAARGIDVSGLDGVINYDIPMDEEYYVHRIGRTGRAGMSGKAFSLVARDEKYRLKSIE 362

Query: 362 KLIEKKVD 369
              + K++
Sbjct: 363 SYTKVKIE 370


>gi|225849264|ref|YP_002729428.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644065|gb|ACN99115.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 397

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 155/374 (41%), Positives = 228/374 (60%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+S + + ++ D GY KPT IQ K IP VL   D+   AQTGTGKTA+F +P   I
Sbjct: 6   FKDLGISQETLKSLEDLGYSKPTEIQEKAIPAVLSGKDLVAQAQTGTGKTAAFGIP---I 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    + +  + L+L PTRELA QVA   +  GKN  + V  + GG   + Q   L++G
Sbjct: 63  VESVNTKQKKIQALVLVPTRELAIQVAKEIKDLGKNKKVFVLSVYGGKSMKHQIDFLKKG 122

Query: 123 ADVLIC-TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I  TPGR+ D   RG L ++N+++ V+DEADRML+MGFI  I++I S +P  RQ L
Sbjct: 123 NDVVIVGTPGRVKDLLERGFLKLDNVKMFVLDEADRMLEMGFIEDIEDIMSYLPEDRQNL 182

Query: 182 LFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
           LFSATM  E+ ++++ FL ++ + I+V     T E I+     V    +++K   +L   
Sbjct: 183 LFSATMPKEILELAQEFLNEDYQTIKVKPDEITVEKIKQIIYRVDPKNKFNKLIEVL--- 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             SQ+  +  IIF   K     L   L K+GFSV AIHG+  Q+ R  +L NF+ G +++
Sbjct: 240 --SQNQAEKTIIFTQTKLEADQLSEDLSKEGFSVSAIHGDFSQKKRETVLHNFRTGKLKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  V  V N+ +P  AE+Y+HRIGRTGRAG+ G A ++    + K++ 
Sbjct: 298 LVATDVAARGLDIKGVELVINYGLPKNAESYVHRIGRTGRAGKEGTAISIPTPSEDKYLQ 357

Query: 359 AIEKLIEKKVDWLN 372
            I +  +  ++ +N
Sbjct: 358 QILQKTKANIEVIN 371


>gi|239617313|ref|YP_002940635.1| DEAD/DEAH box helicase domain protein [Kosmotoga olearia TBF
           19.5.1]
 gi|239506144|gb|ACR79631.1| DEAD/DEAH box helicase domain protein [Kosmotoga olearia TBF
           19.5.1]
          Length = 524

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 148/385 (38%), Positives = 235/385 (61%), Gaps = 14/385 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+++GLS K++ ++   G+V+PTPIQ K IP++L   D+ G A TGTGKTA+F +P+L
Sbjct: 3   MNFSEMGLSRKMLNSIEKVGFVEPTPIQSKAIPVILNGRDIIGQAHTGTGKTAAFGIPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
            +L+    +V+    LIL PTRELA QVA        N   + V  + GG   E Q   L
Sbjct: 63  EMLDYSSKKVQ---ALILCPTRELAVQVAREIAALASNRKEIEVLAIYGGQSIERQINTL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G  V++ TPGRI+DH  R  L +++ + +V+DEAD ML+MGF+  I+ I S V   RQ
Sbjct: 120 KKGIQVVVGTPGRIMDHMRRKTLKLDDTKFVVLDEADEMLNMGFLEDIRYILSHVGKERQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +FSATM   +  +++ F + P+ I+V     T  T+E  ++      S+K   L +L+
Sbjct: 180 ITMFSATMPKAIIALAQEFQKEPELIKVINRELTVSTVEQYYLEI--GESRKFDALSKLI 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +  +  ++FCN KK V  L   L+ +G+ V  +HG++ Q  R +++++F+  +I+++
Sbjct: 238 EYYNP-QLSLVFCNTKKKVDELVPMLQAKGYLVDGLHGDMSQSLRNRVMNSFRNKSIKVL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ D+  VFN+D+P   E Y+HRIGRTGRAG+ GKAF+      +  +  
Sbjct: 297 VATDVAARGIDVDDIEAVFNYDIPQDEEYYVHRIGRTGRAGKTGKAFSFAYGRSLHRLRE 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           I++  + K+        SLN P EK
Sbjct: 357 IQRYTKIKI-------KSLNVPSEK 374


>gi|167584515|ref|ZP_02376903.1| ATP-dependent RNA helicase DbpA [Burkholderia ubonensis Bu]
          Length = 464

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 152/392 (38%), Positives = 225/392 (57%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 9   FSTLPLTPATLANLAQLGYADMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    ++L PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 69  LDARRFDVQ---AMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 126 GAHIVVGTPGRIMDHLDRGTLALDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL+NPK +++      ++  +  +  T  +      LL    + 
Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEVKLAERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRP 245

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 246 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  +  IE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGCIE 361

Query: 362 KLIEKKVDW-----LNGDLSS-LNPPLEKIDI 387
           + ++++V+W     L  D S  L PP+E + I
Sbjct: 362 QALKREVEWHPLAELKADASEPLLPPMETLQI 393


>gi|218887215|ref|YP_002436536.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758169|gb|ACL09068.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 531

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 225/371 (60%), Gaps = 11/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L LS +++ A+ + G+ + +PIQ   IP +L+  DV G AQTGTGKTA+F +P+L
Sbjct: 4   LRFEELSLSKEILKAIEEMGFEETSPIQALAIPHILEGRDVIGQAQTGTGKTAAFGIPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKL 119
              E+   R +  + +IL PTRELA QVA+   +   +   L V  + GG P + Q K L
Sbjct: 64  ---ERIDPREKDIQGIILCPTRELAIQVAEELTQLASRKRGLYVLPVYGGQPIDRQFKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA V++ TPGR++DH  RG + ++ + + V+DEAD MLDMGF   I++I   VP   Q
Sbjct: 121 RRGAQVVVGTPGRVMDHMERGTINLSTVRMAVLDEADEMLDMGFRDDIEHILGQVPGEAQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQ 237
           T+ FSATM   +  +++ FL+ P+ ++V     T  +IE  +  V  + +    C +L  
Sbjct: 181 TVFFSATMPPAILDMAQRFLKTPEFLKVTQKQVTVPSIEQIYYEVRPFQKLEALCRVLDL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                   K  I+FC+ K+ V  L   L+ +G+    +HGN++Q  R ++++ F+   I+
Sbjct: 241 Y-----NPKRAIVFCSTKRGVDELTQHLQGRGYQADGLHGNLNQSQRDRVMARFRSNGIE 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ DV  V N+D+PN  E+Y+HRIGRTGRAGR G+AFT V+  D   +
Sbjct: 296 ILVATDVAARGIDVDDVEAVVNYDIPNAVEHYVHRIGRTGRAGRSGRAFTFVSGRDFYKL 355

Query: 358 DAIEKLIEKKV 368
             I+K  +  +
Sbjct: 356 RDIKKFTKAHI 366


>gi|87121447|ref|ZP_01077336.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
           sp. MED121]
 gi|86163290|gb|EAQ64566.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
           sp. MED121]
          Length = 418

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 163/420 (38%), Positives = 242/420 (57%), Gaps = 16/420 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   ++  V   GY  PTPIQ++ IP VL   DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFTSLGLHSFLLEQVELLGYQTPTPIQLEAIPAVLANKDVMAGAQTGTGKTAAFALPLL 60

Query: 61  TILEKGRARVRMPR------TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L +   ++  P        L+L PTRELA QV  +F  YG+   L   +  GG     
Sbjct: 61  HRLFEAH-QIENPEPNNQVSVLVLTPTRELAQQVYKSFCDYGQALPLRSVVAYGGASINP 119

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  ++ +G DVL+ TPGR+L+   +  + ++ ++ LV+DEADRMLDMGFI  IQ I   +
Sbjct: 120 QIDEIRQGVDVLVATPGRLLELVMKDLVDVSQLKTLVLDEADRMLDMGFIIDIQRILKRL 179

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  +QTL FSAT  D + K+S+  LQ+P  IEV+  +++AE +E  F A   +  KK  L
Sbjct: 180 PQQKQTLFFSATFDDAIFKLSKTLLQDPVLIEVDQRNTSAEQVEQIFYAVDKE--KKSGL 237

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +  L+ S++  +  +IF   K+    L   ++K G    AIHG+  Q +R ++L+ FK G
Sbjct: 238 ISYLIGSKN-WQQVLIFTRTKEGADRLAKEMKKDGIETQAIHGDKSQGARDRVLAAFKAG 296

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            ++ +VA+D+AARGLDI  + +V N ++P  AE+YIHRIGRTGRAG+ G A +L+++++ 
Sbjct: 297 ELRALVATDVAARGLDIEALSYVINHELPYNAEDYIHRIGRTGRAGQSGLAVSLLSEKEN 356

Query: 355 KHIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             +  IEKL++  +   W  G      P L+K +   +     N     ++ G   + KN
Sbjct: 357 YLLKDIEKLLDTPLASQWYPG----FEPDLDKPESKSNKRPLSNKEKRNQALGIKPKAKN 412


>gi|77362320|ref|YP_341894.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76877231|emb|CAI89448.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 433

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 147/376 (39%), Positives = 224/376 (59%), Gaps = 6/376 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F     +P++V A+ +  Y   TPIQ   IP V +  DV   AQTGTGKTA+F LP++
Sbjct: 1   MNFKSFSFAPELVQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPII 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + E   +    P  L+L PTRELA Q+A+NF+ + K+ +L V  L GG+    Q   L
Sbjct: 61  QKLFESEVSTTNAPHALVLAPTRELAEQIANNFKDFAKHTSLKVVSLFGGVNTAGQANAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D+++ TPGR+LDH   G L + +++ LV+DEADRMLDMGFI  +Q +       RQ
Sbjct: 121 KEGVDIVVATPGRLLDHIRLGNLSLASVKHLVLDEADRMLDMGFIEEMQGVIKSCADDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT    +++ +   L+ P+ + V+  +STA T+ H  V    +  +K  LL +L+
Sbjct: 181 ILLFSATFPAAIKQFASKVLKQPEIVRVDQTNSTASTVAH--VVYPVEERRKQELLSELI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  +  ++F N K+    L   L   G      HG+  Q +R + L  FKEG ++++
Sbjct: 239 GKKN-WQQVLVFVNMKETADELVTELNLDGIPAAVCHGDKSQGNRRRALREFKEGKVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+++AARG+DI  +  V N D+P  AE+Y+HRIGRTGRAG+ G+A + V++E+   +  
Sbjct: 298 VATEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGKEGQAISFVSREEENMLFE 357

Query: 360 IEKLIEKKVD--WLNG 373
           IE LI +K+   +L G
Sbjct: 358 IETLIGQKIKRVYLEG 373


>gi|33602957|ref|NP_890517.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
 gi|33568588|emb|CAE34346.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
          Length = 423

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 152/386 (39%), Positives = 230/386 (59%), Gaps = 16/386 (4%)

Query: 41  VCGIAQTGTGKTASFVLPMLTIL----EKGRARVRMP-RTLILEPTRELAAQVADNFEKY 95
           + G AQTGTGKTA+F LP+L  L        +  R P R LIL PTRELA QV ++ ++Y
Sbjct: 1   MMGAAQTGTGKTAAFTLPILHRLMPLANTSASPARHPVRALILTPTRELADQVYESVKRY 60

Query: 96  GKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEA 155
             +  L  A++ GG+    Q + L RG +VL+ TPGR+LDH  +  + ++ + ILV+DEA
Sbjct: 61  SLHTPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEA 120

Query: 156 DRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
           DRMLDMGF+P ++ I  L+P  RQ LLFSAT ++E++K+  ++L +P  IEV   ++TA+
Sbjct: 121 DRMLDMGFLPDLERIIRLLPAQRQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATAD 180

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
           T+    +A       K A +  L++S+  +K  I+F N K     L   LE+ G    +I
Sbjct: 181 TVTQ--IAYQMHGDTKRAAVVHLVKSRG-LKQVIVFSNTKIGTARLARQLERDGVKAESI 237

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG+  Q  RMK L  FK G ++++VA+D+AARGLD+  V  V N+D+P  AE+Y+HRIGR
Sbjct: 238 HGDKTQGDRMKALEAFKAGDLEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGR 297

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           TGRAG  G+A  L   ++ +++  IEKLI+++V     +L +        D+   +H R 
Sbjct: 298 TGRAGASGEAIALFTADEERYLLDIEKLIKRQVPRGKLELPA--------DLVARSHGRD 349

Query: 396 NNPIPQKSTGFDRRKKNYSSQKSHIP 421
            +   ++  G DR +    +  +  P
Sbjct: 350 RDAPRERERGADRHRGERRTSGAAAP 375


>gi|317488296|ref|ZP_07946860.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
 gi|316912603|gb|EFV34148.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
          Length = 516

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 141/366 (38%), Positives = 220/366 (60%), Gaps = 4/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS + + AV   GY  PTP+Q + IPL L+  D+   A+TGTGKTA+F LP L  
Sbjct: 14  FNELGLSDQALEAVARLGYEAPTPVQEQAIPLALEGRDLIAAAKTGTGKTAAFSLPSLDR 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +   + P  L++ PTRELA Q+ +       + +  +  ++GG+ +  Q  KL+ G
Sbjct: 74  LGHAKG-GQGPLMLVVTPTRELAQQIGEVCTAIAASTHHRILTVVGGLSYTPQINKLKHG 132

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI TPGR++D   +G + + ++E+LV+DEADRMLDMGF P ++ I    P +RQTLL
Sbjct: 133 VDILIATPGRLVDLMEQGAVRLGDVEVLVLDEADRMLDMGFWPAMKKIIGATPASRQTLL 192

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   ++      L +P  +E+     TA+T+E   V  +   + K ALL+ +L  +
Sbjct: 193 FSATIDASIKNSVGKLLHDPAFVEIAHKGETADTVEQYIV--HVAQTLKPALLKAVLAEK 250

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  I+F   +    + C  L++ G++  AIH +  Q  R + L NF  G   ++VA+
Sbjct: 251 GSDRV-IVFARTRSRADSTCRRLKRAGYTAEAIHSDRSQAQRRRALDNFAAGKTGVLVAT 309

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ ARG+D+ +V +V N+D+P + E+Y+HRIGRTGRAG  G A + V+ E    +  IEK
Sbjct: 310 DVLARGIDVEEVDYVVNYDLPTQPEDYVHRIGRTGRAGAAGFAVSFVSPETADALRDIEK 369

Query: 363 LIEKKV 368
           LI++ +
Sbjct: 370 LIKRPI 375


>gi|167042639|gb|ABZ07361.1| putative DEAD/DEAH box helicase [uncultured marine crenarchaeote
           HF4000_ANIW133K13]
          Length = 430

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 159/437 (36%), Positives = 252/437 (57%), Gaps = 24/437 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LGL  K++  + DAG+ KP PIQ + IP++L  +DV G A TGTGKTA+F LPM+ 
Sbjct: 3   NFEKLGLEKKILDVLRDAGFTKPFPIQERAIPVLLDGNDVIGQAHTGTGKTAAFALPMIQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++ K +      + +I+ PTRELA Q+    +++ KN  +T A + GG     Q   L +
Sbjct: 63  LVVKNQG----IQGIIMAPTRELALQITSEIKRFAKNTGITTATIYGGQSMGIQLDALRK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             ++++ TPGR++DH  RG + +NN++ +V+DEAD MLDMGFI  I+ I  L P  R T 
Sbjct: 119 KPEIIVATPGRLIDHLKRGTIKLNNVKHVVLDEADIMLDMGFIEDIEFILDLTPEERTTS 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SATM  E+ +++E  +++PKRI V++   +   I+  F+    +  +K   L   +  
Sbjct: 179 LWSATMPPEIIRLAETNMKSPKRILVDSDELSCAGIDQSFLIIKDR--EKSKYLLDFIHG 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   I+FC+ K    ++   L K G SV ++ G++ Q  R   +S F++    ++VA
Sbjct: 237 N--IGQCIVFCSTKIRTRDVAKLLYKSGESVVSVEGDMSQHRRESSMSKFRKSNANILVA 294

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP V  V N+D+PNR   Y HRIGRT RAG  G+A T+V+   +   + I+
Sbjct: 295 TDVAARGIDIPTVALVINYDIPNRDMVYFHRIGRTARAGAKGRAITMVSYSSVGEWNEIK 354

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK--STGFDRRKKNYSSQKSH 419
           K  + KV     +++ LN   EK+ I      +  +P+ ++  +  F  R KN+SSQ S 
Sbjct: 355 K--QTKV-----NMTDLN---EKLGI----EVKIPDPLKRRVATRQFSHRIKNHSSQFSR 400

Query: 420 IPLKESEKISKLQQDIQ 436
             +    K  K ++ IQ
Sbjct: 401 RQMSARNKYDKRKKKIQ 417


>gi|319638186|ref|ZP_07992949.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
 gi|317400459|gb|EFV81117.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
          Length = 469

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 218/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L   D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVRSEGYESPTPIQAQAIPFALDGRDIMASAQTGSGKTAAFLLPTLQR 64

Query: 63  LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPTDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    ++P+ IEV       +  E        ++  K  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 361 IEKYIGRKL 369


>gi|238023960|ref|YP_002908192.1| DEAD/DEAH box helicase [Burkholderia glumae BGR1]
 gi|237878625|gb|ACR30957.1| DEAD/DEAH box helicase [Burkholderia glumae BGR1]
          Length = 461

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 150/368 (40%), Positives = 216/368 (58%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  + +  Y +PTP+Q + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIEPLLRNLRELNYAEPTPVQARAIPAVLGGKDVLAAAQTGTGKTAGFALPLL 60

Query: 61  T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             ++++G A      R L+L PTRELA QV  +F  YG    L +    GG+    Q  K
Sbjct: 61  QRLVQQGPAVSSNRARVLVLVPTRELAEQVLQSFADYGCGLELRMLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + +  LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVRTLVLDEADRMLDLGFARELDAVFAALPTRR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT  DE++ ++   L  P +I V+ P++TA  +    V        K  L   L
Sbjct: 181 QTLLFSATFPDEIRAMAAKRLHEPVQISVSAPNATASRVRQWVVTV--DKRNKPELFMHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L ++   ++ ++F   +  V  L   LE  G +V  IHG+  Q +R++ L  FK G +++
Sbjct: 239 L-AEHGWQHALVFARTRAGVDYLAARLEAAGHAVDTIHGDKPQPARLRALERFKRGEVRM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEK 366
           AIE LI +
Sbjct: 358 AIEALIRQ 365


>gi|255560866|ref|XP_002521446.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223539345|gb|EEF40936.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 781

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 144/367 (39%), Positives = 221/367 (60%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G   +++  VL AG+  PTPIQ ++ P+ LQ  D+  IA+TG+GKT  ++LP    
Sbjct: 165 FEATGFPSEILREVLSAGFSVPTPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLLPGFIH 224

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L++ R   ++ P  L+L PTRELA Q+ D   K+G++  ++   L GG P   Q K+L+R
Sbjct: 225 LKRCRNDPQLGPTVLVLSPTRELATQIQDEAVKFGRSSRISCTCLYGGAPKGPQLKELDR 284

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR+ D     ++ ++ +  LV+DEADRMLDMGF P I+ I   VP  RQTL
Sbjct: 285 GVDIVVATPGRLNDILEMRRISLSQVSYLVLDEADRMLDMGFEPQIRKIVKEVPSRRQTL 344

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY---SKKCALLQQL 238
           +++AT   E++K++ + L NP ++ +    +  E + +  +  Y +     +K   L+Q+
Sbjct: 345 MYTATWPREVRKIAADLLVNPVQVNIG---NVDELVANKSITQYIEVLAPMEKHRRLEQI 401

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+SQ+     IIFC+ KK    L  +L +  F   AIHG+  Q  R  +LS F+ G   +
Sbjct: 402 LRSQEPGSKIIIFCSTKKMCDQLARNLTRT-FGAAAIHGDKSQSERDHVLSQFRTGRSPV 460

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G A+T    +D K+  
Sbjct: 461 LVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDAKYAS 520

Query: 359 AIEKLIE 365
            + K++E
Sbjct: 521 DLIKVLE 527


>gi|32474767|ref|NP_867761.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
 gi|32445306|emb|CAD75308.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
          Length = 452

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 149/365 (40%), Positives = 218/365 (59%), Gaps = 5/365 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LSP +  AV DAG+  P+PIQ   IP  L   DV G A+TGTGKTA+F +P+L  
Sbjct: 46  FDELDLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPILEQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+      R P+ +++ PTRELA QVA   E+  +     +A+L GG     Q ++LE G
Sbjct: 106 LDSLED-CRDPQAIVIVPTRELADQVAAEAERLARGVPTEIAVLSGGKNMNRQLRQLENG 164

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ DH  RG L  NN+  +V+DEADRMLD+GF P I+ I    P  RQTLL
Sbjct: 165 TQLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRMLDIGFRPQIERIMRKCPRNRQTLL 224

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+   +++++E+++  P  I+        +TIE  +  T AQ   K  LL+ LL+ +
Sbjct: 225 LSATLPPVVRRLAESYMHEPVVIDCCRDEMAVDTIEQRYF-TIAQ-DDKVRLLESLLKRE 282

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC-AIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +  IIFC  K+    L   L  +  S C AIHG++ QR R ++L   ++G ++ +VA
Sbjct: 283 KP-EQAIIFCRTKRGTDRLHRKLSHEYGSACGAIHGDLQQRERDRVLQKLRDGNLKFLVA 341

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+  RG+DI  + H+ NFDVP   ++Y+HR+GRTGR GR G A+T V   +   + +IE
Sbjct: 342 TDVVGRGIDISTISHIVNFDVPQDCDDYVHRVGRTGRMGRDGVAYTFVVPGEGDILTSIE 401

Query: 362 KLIEK 366
           + I K
Sbjct: 402 QRINK 406


>gi|134297916|ref|YP_001111412.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134050616|gb|ABO48587.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 460

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 151/368 (41%), Positives = 216/368 (58%), Gaps = 6/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LG+  ++   +   G  +PTPIQ +TIP++L   DV   AQTGTGKT +FVLP   
Sbjct: 3   DFLQLGIRRELNELLRVYGITEPTPIQKQTIPILLSGKDVIAQAQTGTGKTLAFVLP--- 59

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ILEK  A+    + LIL PTRELA Q+    +K     +  V  + GG   E QNK+L+ 
Sbjct: 60  ILEKIDAKKSYIQALILTPTRELALQITTEVKKLASKMDANVLAVYGGQDVERQNKRLQG 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH  RG + +  + +LV+DEAD+ML MGF+  ++ I       RQT+
Sbjct: 120 NTHIVIATPGRLLDHLGRGTIRLTGVSMLVLDEADQMLHMGFLNEVEKIIHQTSAKRQTM 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++ +S  +++ P  I V     T E  +   V T    +K+  L + L + 
Sbjct: 180 LFSATMPAEIRALSVKYMRKPMDIHVRGTGITLEKTKQIAVET-TDRTKQETLRKLLDEY 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q  +  GIIFC  K+    L   L   G++   +HG++ Q  R +++  F+E  +Q++VA
Sbjct: 239 QPYL--GIIFCRTKRRASALNEMLLAHGYNSDELHGDLSQAKREQVMKRFREAKLQILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T V+  D   +  IE
Sbjct: 297 TDVAARGLDVEGVTHVFNYDIPQDVESYIHRIGRTGRAGDTGLAVTFVSPRDRTDLQMIE 356

Query: 362 KLIEKKVD 369
           K I  K++
Sbjct: 357 KGIGMKLE 364


>gi|34498296|ref|NP_902511.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
 gi|34104150|gb|AAQ60509.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 420

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 147/365 (40%), Positives = 218/365 (59%), Gaps = 6/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL P +V + L+  YV+PT IQ   IP +LQ  DV   AQTG+GKTA+F LP+L
Sbjct: 1   MPFASLGLQPDLVQSALEQDYVRPTAIQSAAIPAILQGGDVLATAQTGSGKTAAFCLPLL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNK 117
              L+  RA +R PR LIL PTRELAAQV D      ++    L VA++ GG+    Q  
Sbjct: 61  QQWLDSPRAILRQPRALILLPTRELAAQVGDILRDLAQSLPRKLKVAVVYGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GAD+++ TPGR+LD  +   L ++ ++ LV+DEADR+LD+GF   + ++   +P  
Sbjct: 121 ALRGGADIVVATPGRLLDLLDHNALRLSAVKTLVLDEADRLLDLGFADELGSVLDRLPPA 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT    ++ ++E  L+ P RI++   ++TA  I    +   A   K+  LL+ 
Sbjct: 181 RQNLLFSATFPPAVRALAEKLLKQPLRIDIEHAAATAPDIRQRAIEVDA--GKRTLLLRH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL ++D  K  ++F   ++    +   L + G    A+HG+  Q  R + L++ K G ++
Sbjct: 239 LLATRDWDK-ALVFVASRQAADRVADKLRRNGVPAAALHGDCSQGQRGQALADLKSGRLR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  +  V N+D+P    +Y HRIGRTGRAG  G+A + V+ +   H 
Sbjct: 298 VLVATDVAARGIDIARLPLVVNYDLPRSPVDYTHRIGRTGRAGARGEAISFVSADCAAHF 357

Query: 358 DAIEK 362
             IEK
Sbjct: 358 RLIEK 362


>gi|222151982|ref|YP_002561142.1| hypothetical protein MCCL_1739 [Macrococcus caseolyticus JCSC5402]
 gi|222121111|dbj|BAH18446.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 498

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 228/389 (58%), Gaps = 33/389 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+S   + A+   G+ +PTPIQ+ +IP  +   DV G AQTGTGKT +F +P++  
Sbjct: 4   FRDLGISEPTINALEKLGFTEPTPIQMDSIPHTMAGRDVLGQAQTGTGKTGAFGIPLIEK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + KGR  ++   +LIL PTRELA QVA+  + + +   + V  + GG+P + Q ++L++ 
Sbjct: 64  V-KGREGIQ---SLILAPTRELAVQVAEQLKAFSRGQGIQVTTVFGGMPIDRQIRELKKK 119

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQTL 181
             +++ TPGR++DH NR  L   +I  L++DEAD M++MGFI  ++ I   +P   RQT+
Sbjct: 120 PQIVVGTPGRVIDHLNRRTLKTEDINTLILDEADEMMNMGFIDDMRFIMDKLPKENRQTM 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +Q++ + F++NP  ++  T + +  +IE  +             + + L+ 
Sbjct: 180 LFSATMPKAIQELVQKFMKNPVIVKTMTNNDSDPSIEEFYT------------IVKELEK 227

Query: 242 QDTMKN---------GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            DT  N          I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK
Sbjct: 228 FDTFTNFLDVHRPELAIVFGRTKRRVDELTSALISKGYRAEGLHGDITQAKRLEVLKKFK 287

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
              I ++VA+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+HG A + V   
Sbjct: 288 NDQIDILVATDVAARGLDISGVTHVYNFDIPQDVESYTHRIGRTGRAGKHGMAISFVNPV 347

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           ++ +I  IEK         N  + +L PP
Sbjct: 348 EMDYIRQIEK-------AKNRQMQALRPP 369


>gi|118579798|ref|YP_901048.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118502508|gb|ABK98990.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
           2379]
          Length = 475

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 152/381 (39%), Positives = 224/381 (58%), Gaps = 9/381 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L   +   + DAG+V  TPIQ +T+P+ L   DV G AQTGTGKTA+F++ + 
Sbjct: 1   MKFSELPLPEPLQNGLADAGFVDCTPIQERTLPISLSGKDVAGQAQTGTGKTAAFLVTLF 60

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           T L K         PR LIL PTREL  Q+  + +  G+   LT+  + GG+ +  Q   
Sbjct: 61  TRLLKDSPPEGTHHPRALILAPTRELVVQIEQDAQLLGRQCGLTIQAIYGGVDYMKQRDA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPF- 176
           L  GADV+I TPGR++D+  +    +  IE+LVIDEADRM DMGFI  ++ I   L PF 
Sbjct: 121 LREGADVIIGTPGRLIDYLKQKVYSLKQIEMLVIDEADRMFDMGFIADLRFILRRLPPFD 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ L+FSAT+   + +++  F+  P+++ V     TAE +E      Y    K+   L 
Sbjct: 181 KRQNLMFSATLNQRVMELAYEFMNMPEKVSVTPEKMTAENVEQVI---YHASRKEKFPLL 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L  +D M+  +IF N K+    L   L   GF    I G++DQ+ R++IL  FK G +
Sbjct: 238 LGLLRRDGMERTMIFINTKREGEYLHDRLNANGFPCRLISGDVDQKKRLRILEQFKSGEL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+A+RGL I  V HV N+D+P   E+Y+HRIGRT RAG  GKA +L  ++   +
Sbjct: 298 PILIATDVASRGLHIDGVTHVVNYDLPQDCEDYVHRIGRTARAGAQGKAISLADEDGALY 357

Query: 357 IDAIEKLIEKKV--DWLNGDL 375
           ++AIE+ I+ K+  +W   +L
Sbjct: 358 LEAIEEYIKAKIPCEWAEDEL 378


>gi|313668514|ref|YP_004048798.1| ATP-dependent RNA helicase [Neisseria lactamica ST-640]
 gi|313005976|emb|CBN87433.1| putative ATP-dependent RNA helicase [Neisseria lactamica 020-06]
          Length = 462

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 218/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L   D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVSSEGYESPTPIQAQAIPSALDGRDIMASAQTGSGKTAAFLLPTLQR 64

Query: 63  LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPSDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    ++P+ IEV       +  E        ++  K  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 361 IEKYINRKL 369


>gi|58697110|ref|ZP_00372550.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58698416|ref|ZP_00373327.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225630895|ref|YP_002727686.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia sp.
           wRi]
 gi|58535071|gb|EAL59159.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58536598|gb|EAL59931.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225592876|gb|ACN95895.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia sp.
           wRi]
          Length = 402

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 148/339 (43%), Positives = 209/339 (61%), Gaps = 16/339 (4%)

Query: 24  PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRT---LILEP 80
           PTPIQI+ IPL LQ  D+ G AQTGTGKT +F +P++  L      +  P T   L++ P
Sbjct: 19  PTPIQIQAIPLALQGKDILGSAQTGTGKTLAFAIPLVAKL------LNEPNTGSALVIVP 72

Query: 81  TRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           TRELA QV +   K   +N  L VALLIGG P   Q  +L++   ++I TPGRI+DH  R
Sbjct: 73  TRELAHQVTNEIRKLLSQNSALRVALLIGGEPIFRQLNQLQKKPQIVIGTPGRIIDHIER 132

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
             L+  N+ +LV+DE DRM DMGF   I+ I   +P  RQTL+FSAT+  ++ K++E +L
Sbjct: 133 KTLITRNVSVLVLDETDRMFDMGFGVQIEEIMKHLPKIRQTLMFSATLPGDIVKLAEKYL 192

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLLQSQDTMKNGIIFCNQKKNV 258
             P+RI V+   +T+  I+   V  YA  S+K   L+ QL Q + ++   IIF   K+  
Sbjct: 193 NRPERISVDCEVTTSVKIKQEIV--YASESEKYEKLVTQLCQREGSI---IIFVKTKRGA 247

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             L H L K  +S  AIHG++ Q  R +++++F+ G  Q+MVA+D+A+RGLDIP + HV 
Sbjct: 248 DQLAHRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDVASRGLDIPHIQHVI 307

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           N+D P    +YIHRIGRT RAG  G A + V  +D + +
Sbjct: 308 NYDAPQSQADYIHRIGRTARAGAEGYALSFVTPQDKRRL 346


>gi|148239847|ref|YP_001225234.1| superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803]
 gi|147848386|emb|CAK23937.1| Superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803]
          Length = 606

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 146/372 (39%), Positives = 225/372 (60%), Gaps = 9/372 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA  G S + +   LDA GY +P+PIQ    P ++   D+ G AQTGTGKTA+F LP+L 
Sbjct: 59  FAGFGFS-EALLKTLDAKGYKEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLE 117

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+    R   PR L+L PTRELA QVAD+F+ Y   + +L V  + GG  F +Q   L+
Sbjct: 118 RLD---GRSNTPRVLVLAPTRELAMQVADSFKAYAAGHPHLNVLAIYGGSDFRSQIHALK 174

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR++DH  +G L    +  LV+DEAD ML MGFI  ++ I   +P  RQ 
Sbjct: 175 RGVDVVVGTPGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQV 234

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM +E++++S+ +L+ P  I + T    A+ I    +    Q + K   L ++L+
Sbjct: 235 VLFSATMPNEIRRLSKRYLREPAEITIKTKDREAKRIRQRSITL--QNAHKIEALNRVLE 292

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  T +  IIF   K   + +  SLE  G  V  ++G++ Q  R + +   ++GT+ ++V
Sbjct: 293 AV-TGEGVIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVDRLRKGTVNILV 351

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +G V N+D+P  +E Y+HRIGRTGRAGR G+A   V   + + +  +
Sbjct: 352 ATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAILFVTPRERRFVGNL 411

Query: 361 EKLIEKKVDWLN 372
           E+ + + ++ ++
Sbjct: 412 ERAVNQSIEPMD 423


>gi|91228572|ref|ZP_01262491.1| ATP-dependent RNA helicase DbpA [Vibrio alginolyticus 12G01]
 gi|269964706|ref|ZP_06178944.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|91187851|gb|EAS74164.1| ATP-dependent RNA helicase DbpA [Vibrio alginolyticus 12G01]
 gi|269830605|gb|EEZ84826.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 459

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 147/367 (40%), Positives = 224/367 (61%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+P ++  +    Y   TPIQ  ++P +L+  DV G  +TG+GKTA+F L +L+ 
Sbjct: 6   FDQVGLNPALLATLDSLNYTHMTPIQALSLPAILKHRDVIGQGKTGSGKTAAFGLGVLSN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA      G+  +N+ V  L GG+P   Q   LE 
Sbjct: 66  LNVKRFRVQ---SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH  +G++ ++ +  LV+DEADRMLDMGF   +  I    P  RQTL
Sbjct: 123 GAHILVGTPGRILDHLEKGRIDLSELNTLVLDEADRMLDMGFQDALDAIIDAAPKQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  ++++++++  +Q P+ I+V +   T+ +I   F       ++  AL   LL  
Sbjct: 183 LFSATFPEKIEQIAQRIMQTPEVIKVESTHDTS-SIAQYFYKVEGSEARDEALANLLLTH 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ ++FCN KK V ++   L  +GFSV  IHG+++QR R + L  F   ++ ++VA
Sbjct: 242 QP--ESAVVFCNTKKEVQSVADELHHKGFSVIDIHGDLEQRERDQALVQFANKSVSILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+   ++D   +  IE
Sbjct: 300 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIE 359

Query: 362 KLIEKKV 368
           + +E  V
Sbjct: 360 EYLEMDV 366


>gi|282890698|ref|ZP_06299218.1| hypothetical protein pah_c026o010 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499291|gb|EFB41590.1| hypothetical protein pah_c026o010 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 538

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 147/359 (40%), Positives = 225/359 (62%), Gaps = 12/359 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL+  ++ A+ +A + +P+PIQ K IP++L   DV   AQTGTGKTA+F LP L  
Sbjct: 51  FTDFGLNDSLLKAIAEAKFTQPSPIQEKVIPIILNGQDVVAQAQTGTGKTAAFGLPSLNR 110

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K  A V +   L++ PTRELA QV+D   + GK   +    + GG   + Q   +ERG
Sbjct: 111 LDKA-AGVGL---LVITPTRELAVQVSDELYRLGKYCGIRTIAVYGGQSIQRQIDGIERG 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A V++ TPGR+LD     +L   +  I+V+DEAD ML+MGF+  IQ I + +P  RQTLL
Sbjct: 167 AQVVVATPGRLLDLLKSRRLSHFSPPIVVLDEADEMLNMGFLEDIQEIFTFLPKERQTLL 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQS 241
           FSATM   +QK+++ FL+ P+ I++    + ++ I+  C+V      S++   L +LL +
Sbjct: 227 FSATMPLPIQKLAKTFLREPEFIKITKKETASQNIQQICYV---IHESERDDALVRLLDA 283

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q+  K+ IIFC  KK+V  +   L  +G+    +HG+++Q  R +++  F++   Q++ A
Sbjct: 284 QEEAKS-IIFCRTKKDVDRVSSFLTSRGYGARGLHGDMEQPQRQRVIDGFRQNEFQILAA 342

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI---KHI 357
           +D+AARGL++ DV HV+N+ +P   E+Y+HRIGRTGRAG  G A TL+   ++   KHI
Sbjct: 343 TDVAARGLNVLDVTHVYNYHLPYETESYVHRIGRTGRAGNKGIAITLLNPREVSGLKHI 401


>gi|224825377|ref|ZP_03698482.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224602298|gb|EEG08476.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 460

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 159/393 (40%), Positives = 226/393 (57%), Gaps = 13/393 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ L LSP +V  +   GY + TPIQ +++P++L R D+   A+TG+GKTA+F    L 
Sbjct: 5   DFSSLPLSPSLVDNLASLGYTRMTPIQAQSLPVILNRQDLIAQAKTGSGKTAAF---GLG 61

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           +L+K   R    + L+L PTRELA QVA    +  ++  N+ V  L GG P   Q   LE
Sbjct: 62  LLDKINPRWFAVQALVLCPTRELADQVAKEIRRLARSVDNIKVVTLCGGTPMGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGR+ DH +R  L ++ +E LV+DEADRM+DMGF   I  I +  P  RQT
Sbjct: 122 HGAHVVVGTPGRLHDHLSRNTLDLSTVETLVLDEADRMVDMGFYEEIVGIVAACPRKRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D ++K S  FL+NP  ++V +        +H +     Q  ++ A +  LL 
Sbjct: 182 LLFSATYPDTIRKQSARFLKNPVEVKVESLHDAGHIEQHFY---KIQPERRVATVAALLG 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   I FCN K+ V  L + L++QGFS  A++G ++QR R +IL  F   +  ++V
Sbjct: 239 HFRPVST-IAFCNTKQQVRELANELQQQGFSALALYGELEQRERDEILVQFANRSCSVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N D+ +  E +IHRIGRTGR G  G A +LV   D K +  I
Sbjct: 298 ATDVAARGLDISTLEAVINVDLSHDPEIHIHRIGRTGRGGEKGLALSLVGPNDSKRLALI 357

Query: 361 EKLIEKKVDW-----LNGDLSSLNPPLEKIDIA 388
           E   + K +W     L    S L PP+  + IA
Sbjct: 358 EDYQQAKPNWADPAELTSSGSPLVPPMVTLCIA 390


>gi|107027331|ref|YP_624842.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia AU 1054]
 gi|105896705|gb|ABF79869.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia AU 1054]
          Length = 465

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 155/392 (39%), Positives = 227/392 (57%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GYV  TPIQ  ++P+ L   D+   A+TG+GKTA+F L +L  
Sbjct: 9   FSALPLTPATLANLAQLGYVDMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLAR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+   AR    + +IL PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 69  LD---ARSFDVQAMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  + P TRQTL
Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL+NPK I++      ++  +  +  T     ++   + QLL  
Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEIKLAERHDDSKIRQRFYEVT---EDERLHAVGQLLNH 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   I FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 243 YRPVST-IAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGAIE 361

Query: 362 KLIEKKVDW------LNGDLSSLNPPLEKIDI 387
           +  +++V+W         D S L PP+E + I
Sbjct: 362 QAQKREVEWHPLAELKPADDSVLLPPMETLQI 393


>gi|331006961|ref|ZP_08330204.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium IMCC1989]
 gi|330419223|gb|EGG93646.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium IMCC1989]
          Length = 451

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 148/375 (39%), Positives = 230/375 (61%), Gaps = 12/375 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ A+ D G+   +PIQ +++P  L  HD+ G AQTGTGKTA+F+  ++  
Sbjct: 71  FHDLGLEAPLMHAIADLGFEYCSPIQAQSLPNTLNGHDMLGKAQTGTGKTAAFLTAIIDD 130

Query: 63  LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L K    G       R LI+ PTREL  Q+A++ +   K+ +LTV  L+GG+ +  Q + 
Sbjct: 131 LLKNPLEGERYAGEARALIIAPTRELVVQIAEDAKLLVKHTDLTVHTLVGGMDYTKQQQG 190

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           +  +  D+L+ TPGR+LD  +   + ++ +EILV+DEADRMLDMGFIP ++ I  L P  
Sbjct: 191 VRNKFVDILVATPGRLLDFASNKDVHLDQVEILVLDEADRMLDMGFIPQVRRIVRLTPRC 250

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCAL 234
             RQTL FSAT TD++ +++E + QNP  +E+   S   +T+E H ++      S+K  L
Sbjct: 251 ENRQTLFFSATFTDDVMRLAEQWTQNPCSVEIEPESVATDTVEQHVYLVAA---SEKYKL 307

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L +  D +++ I+F N++     L   L K GFS   + G + Q  R+K L  FK G
Sbjct: 308 LTNLARQPD-VESLIVFGNRRDECRRLHEQLVKHGFSAGLLSGEVAQNKRIKTLDGFKSG 366

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+A RG+ I ++ HV NF +P   E+Y+HRIGRTGRAG+ G + +   ++D 
Sbjct: 367 KIKILVATDVAGRGIHINNISHVVNFSLPEEPEDYVHRIGRTGRAGKKGVSISFACEDDA 426

Query: 355 KHIDAIEKLIEKKVD 369
             +  +EKL+ +K++
Sbjct: 427 FLLPELEKLLGQKLE 441


>gi|333030152|ref|ZP_08458213.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
 gi|332740749|gb|EGJ71231.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
          Length = 404

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 140/371 (37%), Positives = 223/371 (60%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L   V+ A+    + + TPIQ K IP++L+  D+  +AQTGTGKTA+F+LP+L
Sbjct: 1   MKFSELNLHDSVLEALDAMNFEESTPIQEKAIPIILENKDLIAVAQTGTGKTAAFLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             L +G+        +I+ PTRELA Q+    E +    +++   + GG   I FE Q +
Sbjct: 61  DKLSEGKHIPDKVNCIIMSPTRELAQQIDQQMEGFSYFLSVSSVAIYGGSDGIAFEQQKR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GA+V+I TPGR+L H   G + ++ ++  ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTMGAEVVIATPGRLLSHLKLGYVDLSEVKHFILDEADRMLDMGFFDDIMQIAQYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM D++QK+++N L NP+ I++       + ++  +V    Q   K  ++  
Sbjct: 181 RQTIMFSATMPDKIQKLAQNILHNPEEIKLAVSKPAEKILQAAYVCYEGQ---KLNIIND 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L  S+   +  ++F + K  V  +  +L+K    V  IH +++Q++R ++L NFK G I 
Sbjct: 238 LF-SKSKSEKSLVFASSKAKVKEVARALKKMDLKVGEIHSDLNQKTREEMLQNFKAGNID 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+ ARG+D+ D+  V N+DVPN +E+Y+HRIGRT RA   G A T V  +D ++ 
Sbjct: 297 ILVGTDIIARGIDVDDIRLVINYDVPNDSEDYVHRIGRTARANNDGVAITFVNTKDQQNF 356

Query: 358 DAIEKLIEKKV 368
             IE  +EK +
Sbjct: 357 LEIEDFLEKDI 367


>gi|258652378|ref|YP_003201534.1| DEAD/DEAH box helicase domain-containing protein [Nakamurella
           multipartita DSM 44233]
 gi|258555603|gb|ACV78545.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM
           44233]
          Length = 586

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 150/416 (36%), Positives = 232/416 (55%), Gaps = 29/416 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA+ G+  ++V A+ D G  +   IQ  T+P+ L   D+ G A+TG GKT  F +P+L  
Sbjct: 47  FAEFGVDERIVTALADVGIERTFAIQALTLPIALTGSDLIGQARTGMGKTLGFGVPLLQR 106

Query: 61  -------TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                  T+ EKG+  V R PR +++ PTREL  QV  +    GK   L V  + GG  +
Sbjct: 107 LSHDKAVTVDEKGKLPVGRAPRAVVMVPTRELCVQVTRDLHALGKALGLAVTAVYGGRAY 166

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E Q K L+ G D+++ TPGR+LD  N G L++  +++LV+DEAD MLD+GF+P ++ +  
Sbjct: 167 EPQIKALQAGVDLVVGTPGRLLDLANSGHLVLGGVKVLVLDEADEMLDLGFLPDMEKVLD 226

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY---AQYS 229
           LVP  +QT+LFSATM   +  ++  F+  P  I      + AE   H     +   A   
Sbjct: 227 LVPTVKQTMLFSATMPGPILTLARTFMSRPMHIRAE---AAAEGAMHSTTRQFVYRAHAL 283

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            K  +L ++LQ++      ++F   K+    +   LE++GF+  A+HG++ Q +R + L 
Sbjct: 284 DKVEMLARVLQARGRGLT-MVFTRTKRTAAKVAEDLEERGFAAAAVHGDLGQGAREQALR 342

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+ G + ++VA+D+AARG+D+ DV HV NF  P   + Y+HRIGRTGRAG+ G A + +
Sbjct: 343 AFRAGKVDVLVATDVAARGIDVDDVTHVINFQCPEEEKTYVHRIGRTGRAGKTGTAVSFI 402

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
             +DI     I + +E     LN      N P+E    + H  A  +  IP+ +TG
Sbjct: 403 DWDDIPRWQLINQALE-----LN-----FNDPVETYSTSPHLFAELD--IPEGTTG 446


>gi|27366603|ref|NP_762130.1| cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6]
 gi|37676317|ref|NP_936713.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|320158491|ref|YP_004190869.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O]
 gi|27358169|gb|AAO07120.1| Cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6]
 gi|37200858|dbj|BAC96683.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|319933803|gb|ADV88666.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O]
          Length = 641

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 221/370 (59%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+   G+V PTPIQ   IP +LQ  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLELNDAILSALDGMGFVSPTPIQAAAIPHLLQGVDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L+  +   R P+ ++L PTRELA QVA   +  G+N   L V  + GG     Q + L
Sbjct: 66  NKLDLAQ---RKPQAIVLAPTRELAIQVAAEMKNLGQNIRGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA V++ TPGR+ D  NR +L +  +   V+DEAD ML+MGF+  +  I    P + Q
Sbjct: 123 KNGAHVIVGTPGRVQDLINRERLDLGEVHTFVLDEADEMLNMGFVDDVTEIMEHAPSSAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   L+ + E FL++P  ++V   + T + +   F        +K   + +LL
Sbjct: 183 RVLFSATMPPMLKNIVERFLRDPVTVDVAGKNHTVDKVAQQFWVVKG--VEKDEAMSRLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRQGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVD 369
           IE++ +  ++
Sbjct: 360 IERVTKSSME 369


>gi|309378859|emb|CBX22564.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 462

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 218/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L   D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVSSEGYESPTPIQAQAIPSALDGRDIMASAQTGSGKTAAFLLPTLQR 64

Query: 63  LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLMDLMRSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPSDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    ++P+ IEV       +  E        ++  K  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 361 IEKYINRKL 369


>gi|223984537|ref|ZP_03634669.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM
           12042]
 gi|223963523|gb|EEF67903.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM
           12042]
          Length = 556

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 149/372 (40%), Positives = 221/372 (59%), Gaps = 12/372 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LSP++  A+ D GY + T IQ   IP+V+   DV G +QTGTGKTA+F +P++
Sbjct: 1   MKFNELNLSPEMSRAIADCGYTEATYIQSACIPVVMNGGDVIGQSQTGTGKTAAFAIPII 60

Query: 61  TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKK 118
            +LE   R R   P+ LIL PTRELA QV D   K+ K    +    + GG     Q  +
Sbjct: 61  EMLEVTDRKR---PQALILSPTRELAMQVCDEIRKFTKYKEGIRTVAVYGGQQISKQILE 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++GAD+++ TPGR+LDH  R  L  +   +LV+DEAD ML+MGF   I+ +   +P  R
Sbjct: 118 LKKGADIVVGTPGRVLDHIRRRTLRFDQCRVLVLDEADEMLNMGFREDIETVIEALPQQR 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET--IEHCFVATYAQYSKKCALLQ 236
           QT+LFSATM   + +++  +  NP  + + TP +   T  IE  +     +  K+  +L 
Sbjct: 178 QTVLFSATMPKPILEITSQYQTNP--VHIKTPQTQINTPKIEQVYYVCPKEAKKE--ILM 233

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           QL+  Q+     +IFCN KK V  L   L  +G+   A+HG++ Q  R  ++ NFK+G I
Sbjct: 234 QLISMQNP-HLAMIFCNTKKMVDELTSDLVSKGYPAAALHGDMKQEMRTGVMDNFKKGKI 292

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+D+  +  VFN+D+P  +E Y+HRIGRTGRAG+ G A TL+       
Sbjct: 293 NILVATDVAARGIDVDSMDVVFNYDLPQESEYYVHRIGRTGRAGKEGLAVTLITARQKYA 352

Query: 357 IDAIEKLIEKKV 368
           +  +E+    K+
Sbjct: 353 LRDLERTTRSKL 364


>gi|150017770|ref|YP_001310024.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149904235|gb|ABR35068.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 524

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 140/369 (37%), Positives = 227/369 (61%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL   ++ A+   G+ +P+ IQ + IP++L+ HDV G AQTGTGKT +F  P+L+ 
Sbjct: 6   FSELGLDENILKAIDAMGFEEPSKIQAEVIPVLLEGHDVIGQAQTGTGKTLAFGAPVLSR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +     ++    ++IL PTRELA QV D   +  K   + +  + GG P + Q   L RG
Sbjct: 66  IRSSEGKIS---SIILTPTRELAIQVNDELNRIAKFTKIKLLPVYGGQPIDRQISALRRG 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+LD   R  L + +I+ LV+DEAD ML+MGFI  I+ I       RQT+L
Sbjct: 123 IDIVVGTPGRVLDLIRRKVLNLGSIKFLVLDEADEMLNMGFIDDIEEIIKNSNQDRQTML 182

Query: 183 FSATMTDELQKVSENFLQNP-KRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           FSATM +E++++++ ++++  K I +   + T  T++  +  +    ++   C +L    
Sbjct: 183 FSATMPEEIKRLAKRYMKSETKHIAILKNAMTVATVDQYYYEIKNKDRFETLCRIL---- 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D   + IIFC  K+NV  L   L+ +G++   +HG+++Q  R+  L  FKEG+++ +
Sbjct: 239 -DVDEPTSAIIFCKTKRNVDELVEGLQGRGYTAEGMHGDMNQNQRINTLRKFKEGSLEFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+ +V HV N+D+P   E+Y+HRIGRTGRA R G A+TLV   +   +  
Sbjct: 298 IATDVAARGIDVENVTHVINYDLPQDVESYVHRIGRTGRANRKGVAYTLVTAREYMSLKH 357

Query: 360 IEKLIEKKV 368
           IEK+ + K+
Sbjct: 358 IEKVTKSKI 366


>gi|298529095|ref|ZP_07016498.1| DEAD/DEAH box helicase domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510531|gb|EFI34434.1| DEAD/DEAH box helicase domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 367

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 141/368 (38%), Positives = 220/368 (59%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F D  L  ++   +   GY  PT IQ + IP+ LQ  DV G+AQTGTGKTA+FV+P L
Sbjct: 1   MNFTDFELDHRIQAGIKACGYKNPTAIQEQAIPVGLQGRDVMGLAQTGTGKTAAFVVPAL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +G+     PR L+L PTRELA Q  + F   G+   L    + GG+    Q +K+ 
Sbjct: 61  QRLLQGKRG--KPRVLVLSPTRELAEQTHEFFTALGRKTGLRCVSVYGGVSRSGQVQKIR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G ++++  PGR+LD      + ++ +E L++DE+DRMLDMGF+P I++I  ++P  RQ 
Sbjct: 119 SGVEIVVACPGRLLDLARDRAVNLSQVETLILDESDRMLDMGFMPDIRSIMKMLPPKRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++ +++  L +P R++VN   +  ++I  C      +  K   L++ L +
Sbjct: 179 MLFSATMPADIRTLADEILDDPARVQVNHERAL-DSISQCLYPV-KRRPKAEMLIELLRE 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     ++F   K     +   L + GF    + GN+ Q +R +++ +FK G+  ++V
Sbjct: 237 KQDGAT--LVFTRTKHMATRIAKRLSQAGFRARDLQGNMSQNNRQRVMKDFKRGSFNILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RG+D+  +GHV NFD+P+ AE+Y HRIGRTGRA   G A T V  +D   I AI
Sbjct: 295 ATDIASRGIDVAGIGHVVNFDMPDTAESYTHRIGRTGRADSCGDASTFVEPKDFGLIRAI 354

Query: 361 EKLIEKKV 368
           E+L  +K+
Sbjct: 355 ERLQSQKL 362


>gi|254506632|ref|ZP_05118773.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
 gi|219550505|gb|EED27489.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
          Length = 458

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 150/367 (40%), Positives = 222/367 (60%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++   +   GY + TPIQ + +PLVL   DV G  +TG+GKTA+F L +L+ 
Sbjct: 5   FKTLNLRPELTETLDSLGYTEMTPIQQQALPLVLAGKDVIGQGKTGSGKTATFSLGLLSN 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   TL+L PTRELA QVA       +  +N+ V  L GG+P   Q   LE 
Sbjct: 65  LNVSRFRVQ---TLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH ++G++ +  +  LV+DEADRMLDMGF   I  I    P  RQTL
Sbjct: 122 GAHILVGTPGRILDHMSKGRISLKELNTLVLDEADRMLDMGFEEAIDTIIEAAPSKRQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D ++ +SE  +  P+ ++V + +    TIE  F    +   +  AL   LL  
Sbjct: 182 LFSATFPDNIESLSEKVMVAPEMVKVES-THQKSTIEQRFFKLNSTEERDDALEALLLTH 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   ++ ++FCN KK V N+   L  +GFSV  +HG+++QR R + L+ F   +I ++VA
Sbjct: 241 KP--ESSVVFCNTKKEVQNVTDELSHRGFSVVELHGDMEQREREQALTMFANKSISILVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+  ++++   +  I+
Sbjct: 299 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAFSFYSEKEEYRVARID 358

Query: 362 KLIEKKV 368
           + ++  V
Sbjct: 359 EYMDIAV 365


>gi|313892323|ref|ZP_07825915.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
           UPII 345-E]
 gi|313119182|gb|EFR42382.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
           UPII 345-E]
          Length = 491

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 136/357 (38%), Positives = 220/357 (61%), Gaps = 10/357 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS +++ AV D G+ +P+PIQ + IP+ +Q  D+ G AQTGTGKTA+F +P+L  
Sbjct: 5   FKELGLSEEIMKAVADMGFEEPSPIQKEAIPIAMQGKDLIGQAQTGTGKTAAFGIPILQR 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +     P+ ++L PTRELA Q A+      +  N+    + GG   E Q + L++ 
Sbjct: 65  IDTSKPG---PQAIVLSPTRELAIQSAEEINHLAQYMNIKTIPIYGGQDIERQFRALKKK 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++++ TPGR++DH  R  + ++N++I V+DE D M+DMGFI  I+ I +  P  RQTL 
Sbjct: 122 PNIIVATPGRLMDHMKRKTIDLSNVQIAVLDEGDEMVDMGFIDDIRTIMAATPKERQTLF 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA--TYAQYSKKCALLQQLLQ 240
           FSATM   +++++ +FL  P+ +++   + T + IE  ++      ++   C LL   +Q
Sbjct: 182 FSATMPAPIRELANSFLNEPEIVKIKAATVTIDLIEQEYIELPDRQKFDALCRLLD--MQ 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S +     I+F   K+    +  +L+K+ +S   +HG++ Q+ R  ++  FKEGTI  +V
Sbjct: 240 SPEL---AIVFVRTKRRADEVTEALKKRAYSAEGLHGDLSQQKRDSVIRQFKEGTIDFLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           A+D+AARGLDI  V HV+NFD+P   E Y+HR+GRTGRAG+ G A T V   ++  +
Sbjct: 297 ATDVAARGLDISGVTHVYNFDMPQDPEIYVHRVGRTGRAGKTGLATTFVISREMGQL 353


>gi|220931392|ref|YP_002508300.1| DEAD/DEAH box helicase domain protein [Halothermothrix orenii H
           168]
 gi|219992702|gb|ACL69305.1| DEAD/DEAH box helicase domain protein [Halothermothrix orenii H
           168]
          Length = 527

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 151/369 (40%), Positives = 228/369 (61%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L +S +++ AV D G+ + TPIQ K IP +L   D+ G AQTGTGKTA+F +P+L  
Sbjct: 6   FSELNISKEILKAVEDMGFEETTPIQTKAIPPILNGKDIIGQAQTGTGKTAAFGIPLL-- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
            EK   R + P+ +IL PTRELA QVA+  ++  K   +L    + GG   + Q K L++
Sbjct: 64  -EKIDTRNKKPQAIILCPTRELAIQVAEELKRLAKYKRSLYTLPVYGGQSIKRQIKALKK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+I TPGR++DH  RG L +++I  +V+DEAD MLDMGFI  I+ I   +P  RQTL
Sbjct: 123 GVQVIIGTPGRVMDHMRRGTLNLSHINFVVLDEADVMLDMGFIDDIKTILKDIPNDRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT+ + +  +S+ + +  + I++     T   IE  +     + S K  +L +L+  
Sbjct: 183 FFSATIPETILDLSKRYQKKSQFIKIAHEKLTVPGIEQYYYE--VRRSDKLKVLTRLI-- 238

Query: 242 QDTMKNGI--IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            D    G+  IFCN +K V  L   L+ +G+   A+HG  +Q  R +++  F+ G I+++
Sbjct: 239 -DLYSPGLSLIFCNTRKMVEELNIQLQARGYLSDALHGGFNQNQRDRVMDKFRNGIIEIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V  VFN+DVP   + Y+HRIGRTGRAG+ GKAFT V  +DI  +  
Sbjct: 298 VATDVAARGIDVNGVEAVFNYDVPQDTDYYVHRIGRTGRAGKTGKAFTFVVGKDIYKLRD 357

Query: 360 IEKLIEKKV 368
           I+K  + ++
Sbjct: 358 IQKYTKTRI 366


>gi|89072916|ref|ZP_01159473.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89051438|gb|EAR56893.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 654

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 223/369 (60%), Gaps = 7/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L L+  ++ A+ + G+V PTPIQ  +IPL+L   D  G AQTGTGKTA+F LP+L 
Sbjct: 33  EFRQLDLADTLLSALDNMGFVAPTPIQAASIPLLLTGTDALGKAQTGTGKTAAFSLPVLN 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++  + +   P+ +++ PTRELA QVA   +  G+N   L V  + GG     Q + L+
Sbjct: 93  KVDLSQHK---PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRALK 149

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ D  +R +L ++ +   V+DEAD ML MGF+  +  I    P T Q 
Sbjct: 150 NGAHIVVGTPGRVKDLISRKQLQLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQR 209

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++++ + FL+NP RI+V   + T   +E  F        +K   + +LL+
Sbjct: 210 VLFSATMPPIVKEIVDRFLRNPARIDVAGENRTVSKVEQQFWVVKG--VEKDEAMSRLLE 267

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++DT    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K G I ++V
Sbjct: 268 TEDT-DASIVFVRTRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILV 326

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  I
Sbjct: 327 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRAGKAILLVRTNQIRMLRTI 386

Query: 361 EKLIEKKVD 369
           E++ + +++
Sbjct: 387 ERVTKSRME 395


>gi|184200206|ref|YP_001854413.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila
           DC2201]
 gi|183580436|dbj|BAG28907.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila
           DC2201]
          Length = 719

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 140/373 (37%), Positives = 225/373 (60%), Gaps = 7/373 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+  +V+ A+ + GY  P+PIQ  TIP +L   DV G+AQTGTGKTA+F +P L+ 
Sbjct: 78  FAELGVDGRVLAALDEVGYEYPSPIQAATIPALLSGRDVVGLAQTGTGKTAAFAVPALSK 137

Query: 63  LEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
           L +        R  R L+L PTRELA QVA+ F  Y  +  + TV  + GG  +  Q   
Sbjct: 138 LAELSDLHGPQRSTRVLVLAPTRELALQVAEAFGSYATHLEDFTVLPVYGGSSYGPQLAG 197

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RGA V++ TPGR++DH ++G L +++I  +V+DEAD ML MGF   ++ I +  P  +
Sbjct: 198 LKRGAQVVVGTPGRVIDHLSKGSLKLDDIAYVVLDEADEMLRMGFSEDVEKILAQTPVEK 257

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q  LFSATM   ++++++ +L++P+ I V   ++T       ++     +  K   + ++
Sbjct: 258 QVALFSATMPKAIRRIAQQYLRDPQEITVKAKTTTGTNTRQRYMQVMGPH--KLDAMTRV 315

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ +D     I+F   K     +   L+ +G++  AI+G+I Q  R + + + +EG I +
Sbjct: 316 LEVED-YDGVIVFVRTKAATEEIADKLKARGYTAAAINGDIPQNLRERTVDSLREGKIDI 374

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  +  V N+D+P+  E+Y+HRIGRTGRAGR G+A   +   +   + 
Sbjct: 375 LVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRKGEAILFMTPREKYLLR 434

Query: 359 AIEKLIEKKVDWL 371
           AIEK   + V+ +
Sbjct: 435 AIEKATRQPVEQM 447


>gi|15230730|ref|NP_187299.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|75313790|sp|Q9SQV1|RH40_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 40
 gi|6437557|gb|AAF08584.1|AC011623_17 putative RNA helicase [Arabidopsis thaliana]
 gi|332640879|gb|AEE74400.1| DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana]
          Length = 1088

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 143/364 (39%), Positives = 216/364 (59%), Gaps = 2/364 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL P+++  +L AG+  PTPIQ +T P+ LQ  D+  IA+TG+GKT  +++P   +
Sbjct: 437 FESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFIL 496

Query: 63  LEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   R   R  P  LIL PTRELA Q+ D   ++G++  ++   L GG P   Q K+LER
Sbjct: 497 LRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELER 556

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GAD+++ TPGR+ D      +    + +LV+DEADRMLDMGF P I+ I + +P  RQTL
Sbjct: 557 GADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTL 616

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +++AT   E++K++ + L NP ++ +      A               +K   L+Q+L+S
Sbjct: 617 MYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILRS 676

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q+     IIFC+ K+   +L  S+ +  F    IHG+  Q  R  +L+ F+ G   +++A
Sbjct: 677 QERGSKVIIFCSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERDWVLNQFRSGKSCVLIA 735

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G AFT   ++D K+   + 
Sbjct: 736 TDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLI 795

Query: 362 KLIE 365
           K++E
Sbjct: 796 KVLE 799


>gi|90577457|ref|ZP_01233268.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90440543|gb|EAS65723.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 654

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 223/369 (60%), Gaps = 7/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L L+  ++ A+ + G+V PTPIQ  +IPL+L   D  G AQTGTGKTA+F LP+L 
Sbjct: 33  EFRQLDLADTLLSALDNMGFVAPTPIQAASIPLLLTGTDALGKAQTGTGKTAAFSLPVLN 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++  + +   P+ +++ PTRELA QVA   +  G+N   L V  + GG     Q + L+
Sbjct: 93  KVDLSQHK---PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRALK 149

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ D  +R +L ++ +   V+DEAD ML MGF+  +  I    P T Q 
Sbjct: 150 NGAHIVVGTPGRVKDLISRKQLQLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQR 209

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++++ + FL+NP RI+V   + T   +E  F        +K   + +LL+
Sbjct: 210 VLFSATMPPIVKEIVDRFLRNPARIDVAGENRTVSKVEQQFWVVKG--VEKDEAMSRLLE 267

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++DT    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K G I ++V
Sbjct: 268 TEDT-DASIVFVRTRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILV 326

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  I
Sbjct: 327 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRTGKAILLVRTNQIRMLRTI 386

Query: 361 EKLIEKKVD 369
           E++ + +++
Sbjct: 387 ERVTKSRME 395


>gi|299140955|ref|ZP_07034093.1| ATP-dependent RNA helicase DeaD [Prevotella oris C735]
 gi|298577921|gb|EFI49789.1| ATP-dependent RNA helicase DeaD [Prevotella oris C735]
          Length = 542

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 146/373 (39%), Positives = 234/373 (62%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  + K TP+Q   IP +L+ +DV G+AQTGTGKTA+++LP+L
Sbjct: 1   MYFDELELNDNVLDALYDMRFEKCTPVQENCIPEILKGNDVLGVAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIG--GIPFEAQN 116
           + L+ G         LI+ PTRELA Q+    + +G   N   +VA+  G  G  ++ + 
Sbjct: 61  SKLDDGGYPDNAINCLIMSPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQEL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P 
Sbjct: 121 KSLQLGADVVIATPGRLISHISLGNVDLSKVSFFILDEADRMLDMGFSDDIIKIAKKLPQ 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T QT++FSATM D+++ +++  L+NPK I++   S  AE I+      Y   ++K  +++
Sbjct: 181 TCQTIMFSATMPDKIEDLAKTLLKNPKVIKLAV-SKPAEKIKQSAYVCYE--TQKMGIIK 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            + ++ D ++  IIFC  K  V  +  +L+++  +   +H ++DQ +R  ++  FK G  
Sbjct: 238 DIFKNGD-LERVIIFCGSKLKVKQVAGALQRKHINCGEMHSDLDQATRDDVMFKFKSGQF 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ ARG+DI D+  V N+DVP+ AE+Y+HRIGRT RA R G A T V+++DI +
Sbjct: 297 DVLVATDIVARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARAAREGSAITFVSEDDIYY 356

Query: 357 IDAIEKLIEKKVD 369
              IEK +EK+V+
Sbjct: 357 FQQIEKFLEKEVE 369


>gi|188996905|ref|YP_001931156.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931972|gb|ACD66602.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 405

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 155/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL LS + + ++ + GY KPT IQ K IP V+   D+   AQTGTGKTA+F +P   I
Sbjct: 8   FKDLNLSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAFGVP---I 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +EK   + +  + LIL PTRELA QVA   ++ GKN  +    + GG     Q   L++G
Sbjct: 65  VEKVNPKQKKVQALILVPTRELAIQVAKEIKELGKNKKVYTLAVYGGKSISHQINFLKKG 124

Query: 123 ADVLIC-TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           +DV++  TPGR+ D   RG L ++N+++ V+DEADRML+MGFI  I+ I S +P  RQ L
Sbjct: 125 SDVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSYLPEDRQNL 184

Query: 182 LFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
           LFSATM  E+  ++E FL +N + I V     T E I+     V    ++ K   +L   
Sbjct: 185 LFSATMPKEILDLAEEFLNENYETIRVKPDEVTVEKIKQIIYRVNPRDKFKKLTEVL--- 241

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             SQ+  +  IIF   K     L   L ++GF+  AIHG+  Q+ R  +L NF+ G +++
Sbjct: 242 --SQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  V  V N+ +P  AE+YIHRIGRTGRAGR G A +++   + K + 
Sbjct: 300 LVATDVAARGLDIKGVDLVINYGLPRDAESYIHRIGRTGRAGREGTAISIMTPSEDKQLQ 359

Query: 359 AIEKLIEKKVDWLN 372
            I+K  +  ++ +N
Sbjct: 360 NIQKKTKANIEVIN 373


>gi|319648702|ref|ZP_08002913.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2]
 gi|317389121|gb|EFV69937.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2]
          Length = 516

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 142/354 (40%), Positives = 218/354 (61%), Gaps = 6/354 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F +P++  +      ++    +++ 
Sbjct: 2   GFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQ---AIVIA 58

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA QV++   K G++    V  + GG     Q + L++   +++ TPGR+LDH NR
Sbjct: 59  PTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKKNPHIIVGTPGRLLDHINR 118

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
             + +  +  +V+DEAD ML+MGFI  I++I S VP   QTLLFSATM   +++++E F+
Sbjct: 119 RTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLFSATMPAPIKRIAERFM 178

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
            NP+ ++V     T   I+  ++  + +  KK   L +LL  Q + +  I+F   K+ V 
Sbjct: 179 TNPEHVKVKAKEMTVSNIQQFYLEVHER--KKFDTLTRLLDIQ-SPELAIVFGRTKRRVD 235

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            L  +L  +G++   IHG++ Q  RM  L  FK+G I+++VA+D+AARGLDI  V HV+N
Sbjct: 236 ELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARGLDISGVTHVYN 295

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
           FDVP   E+Y+HRIGRTGRAG+ G A T +   +   + AIE+  ++K+D +  
Sbjct: 296 FDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTTKRKMDRMKA 349


>gi|307720439|ref|YP_003891579.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978532|gb|ADN08567.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 518

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 142/364 (39%), Positives = 226/364 (62%), Gaps = 11/364 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P+++ +V  AG+  P+PIQ + IP++L+  D+ G A TGTGKTA+F LP+L+ 
Sbjct: 21  FDSLGLKPEILKSVKFAGFTIPSPIQAQAIPIILEGRDMVGQAHTGTGKTAAFSLPVLSN 80

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + K    V M   L++ PTRELA QV+D   KYG+N  +    + GG  ++ Q   + RG
Sbjct: 81  M-KLDGSVEM---LVITPTRELATQVSDEIFKYGRNLGVKTVTVYGGSSYKRQLDLIGRG 136

Query: 123 ADVLICTPGRILDHFNRGKLLMNNI--EILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           A V++ TPGR+LD   R   ++NN    ++V+DEAD MLDMGF+  I  I S +P  RQT
Sbjct: 137 ASVVVATPGRMLDLLKRN--MLNNFAPSVVVLDEADEMLDMGFLDDINEIFSYLPTNRQT 194

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ ++   L++P  + +    +T   IE  +     ++ +  A++ +L+ 
Sbjct: 195 LLFSATMPQPIKNLANRILKDPAFVSITKGETTNTDIEQEYYV-IDEHERDDAII-RLMD 252

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++DT K  ++FC  K  V  L + L   G+    +HG+++QR R  ++  FK  +++++V
Sbjct: 253 AEDT-KKAVVFCRTKSEVDRLSNVLSNAGYLANGLHGDMEQRQRETVIKGFKNDSVKVLV 311

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ + ++ HVFN+ +P   E+Y+HRIGRTGRAG  GKA TL+   + K +  I
Sbjct: 312 ATDVAARGIHVNNISHVFNYHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRI 371

Query: 361 EKLI 364
           ++ +
Sbjct: 372 KQKV 375


>gi|90020267|ref|YP_526094.1| ATP-dependent RNA helicase RhlB [Saccharophagus degradans 2-40]
 gi|89949867|gb|ABD79882.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 392

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 141/376 (37%), Positives = 238/376 (63%), Gaps = 12/376 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L LSP V+ A+ D  + + + IQ K++P  L+ HDV G AQTGTGKTA+F++ ++
Sbjct: 6   LSFEELNLSPLVMRALSDLKFTECSAIQAKSLPFTLRGHDVLGKAQTGTGKTAAFLIALI 65

Query: 61  -----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                T +E+ R      R+L++ PTRELA Q+A + E   K+ +L V +L+GG+ +  Q
Sbjct: 66  EDLLGTPIEEERY-AGEARSLVIAPTRELAMQIAKDAENLVKHTDLKVHILVGGVDYAKQ 124

Query: 116 NKKLE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
            +KL+    D+L+ TPGR+LD   +  + ++ +E+LVIDEADRMLDMGFIP ++ I  + 
Sbjct: 125 LQKLQAEHIDILVATPGRLLDFCEKRAVYLDQVEVLVIDEADRMLDMGFIPQVKRIVRMT 184

Query: 175 PFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           P +  RQTLLFSAT ++++ ++SE ++  P  + +   +  A+ ++   V       +K 
Sbjct: 185 PPSTHRQTLLFSATFSEDVLRLSEQWMHEPVTVSIEDENVAADRVKQ--VVYLVSSEEKF 242

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            +L  L++  D ++N +IF N++    +L H L+++GF V  + G I Q  R++ L +F+
Sbjct: 243 TVLGNLMREPD-VENIMIFANRRDQCRDLHHKLQRRGFRVGLLSGEIAQNKRIRTLEDFR 301

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G +  +VA+D+A RG+ I  + HV N+ +P   E+Y+HRIGRTGRAG+ G + +L  ++
Sbjct: 302 TGKLTALVATDVAGRGIHIDGISHVVNYTLPEEPEDYVHRIGRTGRAGKEGVSVSLACED 361

Query: 353 DIKHIDAIEKLIEKKV 368
           D   ++ I++L+ +K+
Sbjct: 362 DALRLEPIQELLGRKI 377


>gi|329121361|ref|ZP_08249987.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
 gi|327469770|gb|EGF15236.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
          Length = 497

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 135/357 (37%), Positives = 220/357 (61%), Gaps = 10/357 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS +++ AV D G+ +P+PIQ + +P+ +Q  D+ G AQTGTGKTA+F +P+L  
Sbjct: 11  FKELGLSEEIMKAVADMGFEEPSPIQKEAVPIAMQGKDLIGQAQTGTGKTAAFGIPILQR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +     P+ ++L PTRELA Q A+      +  N+    + GG   E Q + L++ 
Sbjct: 71  IDTSKPG---PQAIVLSPTRELAIQSAEEINHLAQYMNIKTIPIYGGQDIERQFRALKKK 127

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++++ TPGR++DH  R  + ++N++I V+DE D M+DMGFI  I+ I +  P  RQTL 
Sbjct: 128 TNIIVATPGRLMDHMKRKTIDLSNVQIAVLDEGDEMVDMGFIDDIRTIMAATPKERQTLF 187

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA--TYAQYSKKCALLQQLLQ 240
           FSATM   +++++ +FL  P+ +++   + T + IE  ++      ++   C LL   +Q
Sbjct: 188 FSATMPAPIRELANSFLNEPEIVKIKAATVTIDLIEQEYIELPDRQKFDALCRLLD--MQ 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S +     I+F   K+    +  +L+K+ +S   +HG++ Q+ R  ++  FKEGTI  +V
Sbjct: 246 SPEL---AIVFVRTKRRADEVTEALKKRAYSAEGLHGDLSQQKRDSVIRQFKEGTIDFLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           A+D+AARGLDI  V HV+NFD+P   E Y+HR+GRTGRAG+ G A T V   ++  +
Sbjct: 303 ATDVAARGLDISGVTHVYNFDMPQDPEIYVHRVGRTGRAGKTGLATTFVISREMGQL 359


>gi|256832539|ref|YP_003161266.1| DEAD/DEAH box helicase domain-containing protein [Jonesia
           denitrificans DSM 20603]
 gi|256686070|gb|ACV08963.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM
           20603]
          Length = 657

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 139/369 (37%), Positives = 219/369 (59%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L  ++  AV D G+  P+ IQ + IP++ +  D+ GIAQTGTGKTA+F +P+L
Sbjct: 49  LTFADLNLPNQIQRAVDDLGFTVPSKIQQQAIPVLFEGRDITGIAQTGTGKTAAFGIPLL 108

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             ++     VR  + L+L PTRELA QV++  E + ++   L    + GG P+  Q + L
Sbjct: 109 ASIDTS---VRQVQALVLAPTRELAIQVSEAIESFARHMPGLETLAVYGGSPYPPQIRAL 165

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  V++ TPGR++DH  RG L ++ +  LV+DEAD ML MGF   ++ + S  P  RQ
Sbjct: 166 KTGVHVVVGTPGRVIDHIERGTLDLSQVRFLVLDEADEMLRMGFADDVEKVFSETPADRQ 225

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   +++V++  L NP  I V   S+T   I+  +      +  K   L ++L
Sbjct: 226 VALFSATMPPAIRRVAQRHLTNPVEIAVARQSTTVTAIDQEYAVV--PFRHKTGSLYRVL 283

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + D ++  I+FC  +     +  +L ++G S   I G++ Q+ R KI+   + G + ++
Sbjct: 284 ATSD-VEAAIVFCRTRGAAEEVGAALIERGVSAATISGDVPQKDREKIVERLRNGQLDVL 342

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +G V NFD+P   E Y+HRIGRTGRAGR G+A + +   +   + +
Sbjct: 343 VATDVAARGLDVDRIGLVVNFDIPGEPEAYVHRIGRTGRAGRQGRALSFITPAERGKLRS 402

Query: 360 IEKLIEKKV 368
           IE+ I  ++
Sbjct: 403 IERTIRTEL 411


>gi|170077242|ref|YP_001733880.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
 gi|12003026|gb|AAG43442.1|AF186181_2 ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
 gi|169884911|gb|ACA98624.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
          Length = 487

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 148/366 (40%), Positives = 217/366 (59%), Gaps = 5/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS   V  + + G+ KPT IQ K IP +L+  DV G++QTGTGKTA++ LP L  
Sbjct: 5   FQTIGLSDARVDLLENIGFEKPTEIQSKAIPAILEGRDVVGLSQTGTGKTAAYSLPFL-- 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            EK     +  + LIL PTRELA QV  + +++  +  L V  + GG   E Q + L++G
Sbjct: 63  -EKIDLEQKTVQGLILTPTRELAVQVTQSLKEFAVDRRLWVLTVCGGQSMERQIRSLQKG 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++D   RGKL    +   V+DEAD ML MGFI  ++ I    P TRQT+ 
Sbjct: 122 VHIVVGTPGRVIDLLERGKLSFEELRWAVLDEADEMLSMGFIDDVKKILRQSPKTRQTVC 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   ++ + ENFL +P  I +  P  T + I          +SK  ALL  L  + 
Sbjct: 182 FSATMPPAIRDLVENFLNDPINITIKQPQVTPDRIAQEVYMIPRGWSKTKALLPILEMAN 241

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              ++ IIF   K+    L + L + G S    HG+++Q  R K++  FK+G I+++VA+
Sbjct: 242 P--ESAIIFVRTKRTASELTNELVEAGQSADEYHGDLNQNQREKLVRRFKDGKIKMIVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+ ++ HV NFD+P+  E+YIHRIGRTGRAG+ G A  LV   D + +  IE+
Sbjct: 300 DIAARGLDVENLSHVINFDLPDNTESYIHRIGRTGRAGKTGTAIALVEPSDRRLLRQIER 359

Query: 363 LIEKKV 368
            +++ +
Sbjct: 360 RVKQSL 365


>gi|315230959|ref|YP_004071395.1| cold-shock DEAD-box protein A [Thermococcus barophilus MP]
 gi|315183987|gb|ADT84172.1| cold-shock DEAD-box protein A [Thermococcus barophilus MP]
          Length = 389

 Score =  273 bits (699), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 142/364 (39%), Positives = 221/364 (60%), Gaps = 9/364 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59
           M F  LGLS   + AV   G+ +PT IQ + IPL L+   D+ G +QTGTGKTASF LP+
Sbjct: 8   MSFEKLGLSENTLGAVRRKGFSEPTDIQREVIPLFLRGDADIVGQSQTGTGKTASFALPL 67

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + ++ +    V+    +IL PTRELA QVAD  +       + V  + GG P   Q + L
Sbjct: 68  VDVINEYEREVQ---AIILTPTRELALQVADEIKSLRGKKRIKVLSVYGGQPIGPQIRAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GA +++ TPGR+LDH  RG L ++ I+  ++DEADRMLDMGFI  I+ I    P  ++
Sbjct: 125 RKGAHIVVGTPGRVLDHIRRGTLRLDGIQYFILDEADRMLDMGFIDDIRAIFRETPRDKR 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  E+ K+++ +++  + I  ++       +E  ++      ++K ++L+++L
Sbjct: 185 VLMFSATMPREVLKLAKRYMKEYELIRTSSDEPVPNLVEQEYIEVVP--ARKISVLERIL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+     GI+FC  K+    L   L + G+S  A++G++ Q+SR + L  FK   I ++
Sbjct: 243 NSEFY---GIVFCQTKRETRILAEKLARIGYSAEALNGDMSQKSRERALMRFKRRKINIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ D+ H+ N+ +P  AE YIHRIGRTGRAG+ GKA T +   + + +  
Sbjct: 300 VATDVAARGIDVQDITHIVNYSLPQNAEMYIHRIGRTGRAGKKGKAITFIMPGEYRRLRY 359

Query: 360 IEKL 363
           IE +
Sbjct: 360 IENI 363


>gi|170696968|ref|ZP_02888064.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170138142|gb|EDT06374.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 465

 Score =  273 bits (699), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 151/393 (38%), Positives = 229/393 (58%), Gaps = 16/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GYV  TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 9   FSALPLTPAALANLTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    ++L PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 69  LDTRRFDVQ---AMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  + P TRQTL
Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL+NPK +++      ++  +  +       +++   + QLL  
Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEVKLEERHDNSKIRQRFY---EVAETERLHAVGQLLNH 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 243 YRPVST-IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 361

Query: 362 KLIEKKVDWL-------NGDLSSLNPPLEKIDI 387
           + +++ V+W         G+  +L PP+E + I
Sbjct: 362 QALKRDVEWHPLAELKPAGN-DTLLPPMETLQI 393


>gi|225677315|ref|ZP_03788292.1| ATP-dependent RNA helicase, DeaD/DeaH box [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590642|gb|EEH11892.1| ATP-dependent RNA helicase, DeaD/DeaH box [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 402

 Score =  273 bits (699), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 148/342 (43%), Positives = 212/342 (61%), Gaps = 16/342 (4%)

Query: 24  PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRT---LILEP 80
           PTPIQI+ IPL LQ  D+ G AQTGTGKT +F +P++  L      +  P T   L++ P
Sbjct: 19  PTPIQIQAIPLALQGKDILGSAQTGTGKTLAFAIPLVAKL------LNEPNTGSALVIVP 72

Query: 81  TRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           TRELA QV +   K   +N  L VALLIGG P   Q  +L++   ++I TPGRI+DH  R
Sbjct: 73  TRELAHQVTNEIRKLLSQNSALRVALLIGGEPIFRQLNQLQKKPQIVIGTPGRIIDHIER 132

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
             L+  N+ +LV+DE DRM DMGF   I+ I   +P  RQTL+FSAT+  ++ K++E +L
Sbjct: 133 KTLINRNVSVLVLDETDRMFDMGFGVQIEEIMKHLPKIRQTLMFSATLPGDIVKLAEKYL 192

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLLQSQDTMKNGIIFCNQKKNV 258
             P+RI V+  ++T+  I+   V  YA  S+K   L+ QL Q + ++   IIF   K+  
Sbjct: 193 NRPERISVDCEATTSVKIKQEIV--YASESEKYEKLVTQLCQREGSI---IIFVKTKRGA 247

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             L + L K  +S  AIHG++ Q  R +++++F+ G  Q+MVA+D+A+RGLDIP + HV 
Sbjct: 248 DQLANRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDVASRGLDIPHIQHVI 307

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           N+D P    +YIHRIGRT RAG  G A + V  +D + + A+
Sbjct: 308 NYDAPQSQADYIHRIGRTARAGAEGYALSFVTPQDKRRLPAL 349


>gi|253574214|ref|ZP_04851556.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251846691|gb|EES74697.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 375

 Score =  273 bits (699), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 145/369 (39%), Positives = 223/369 (60%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L +SP +V  +   G V PTP+Q   IP++    D    AQTGTGKT +F+LP   I
Sbjct: 5   FESLNVSPLLVRKLQGQGIVNPTPVQAAAIPVLQSGEDAIVQAQTGTGKTLAFLLP---I 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           LEK R      + LI+ PTRELA Q+     K  +    L+V    GG   E Q +KL+ 
Sbjct: 62  LEKIRPERPEAQALIITPTRELAIQITAEARKLAEAMEGLSVLAAYGGQDVERQLRKLKN 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA ++I TPGR+LDH  RG L +  +  LV+DEAD+ML MGF+  ++ I SLVP +RQT+
Sbjct: 122 GAQLVIGTPGRLLDHLRRGSLTLGAVRYLVLDEADQMLHMGFLAEVEEILSLVPRSRQTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSATM   ++++++ ++  P+ I++  T   T ++I    V      +K+ AL++ +  
Sbjct: 182 LFSATMPGNVKRLAKTYMDKPRDIQIAETSRVTLDSIRQILVEC-TDRTKQSALIESIRS 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  +   +IFC  K+    L  +L+  GF    +HG++ Q  R +++  F+   ++L+V
Sbjct: 241 QRPYL--AVIFCRTKRRASTLNEALQAAGFQSDELHGDLSQAKREQVMRAFRSAKLELLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HVFN+D+P+  ++YIHRIGRTGRAG  G A T  A +D++ +  I
Sbjct: 299 ATDVAARGIDVEGVTHVFNYDIPHDVDSYIHRIGRTGRAGEKGVAVTFAAPKDMEALRLI 358

Query: 361 EKLIEKKVD 369
           E+ I +K++
Sbjct: 359 ERGIGRKLE 367


>gi|269960877|ref|ZP_06175247.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
 gi|269834317|gb|EEZ88406.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
          Length = 459

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 146/367 (39%), Positives = 225/367 (61%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+P ++  +    Y   TPIQ  ++P +L + DV G  +TG+GKTA+F L +L+ 
Sbjct: 6   FDQVGLTPALLETLESLNYTHMTPIQALSLPAILNQRDVIGQGKTGSGKTAAFGLGVLSN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA      G++ +N+ V  L GG+P   Q   LE 
Sbjct: 66  LNVKRFRVQ---SLVLCPTRELADQVAKEIRTLGRSIHNIKVLTLCGGMPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH  +G++ +  +  LV+DEADRMLDMGF   +  I    P  RQTL
Sbjct: 123 GAHILVGTPGRILDHLEKGRINLEELNTLVLDEADRMLDMGFQDALDAIIEAAPKQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  ++++++++  +Q+P+ I+V +   T+ +I   F       ++  AL   LL  
Sbjct: 183 LFSATFPEKIEQIAQRIMQSPEMIKVESTHDTS-SIAQYFYNVEGSEARDEALANLLLTH 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ ++FCN KK V N+   L  +GFSV  +HG+++QR R + L  F   ++ ++VA
Sbjct: 242 QP--ESAVVFCNTKKEVQNVADELHHKGFSVIDLHGDLEQRERDQALVQFANKSVSILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+   ++D   +  IE
Sbjct: 300 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIE 359

Query: 362 KLIEKKV 368
           + ++  V
Sbjct: 360 EYLDMDV 366


>gi|189467630|ref|ZP_03016415.1| hypothetical protein BACINT_04020 [Bacteroides intestinalis DSM
           17393]
 gi|189435894|gb|EDV04879.1| hypothetical protein BACINT_04020 [Bacteroides intestinalis DSM
           17393]
          Length = 482

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 156/422 (36%), Positives = 237/422 (56%), Gaps = 14/422 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  + +S  V  A+L+  Y  PT IQ + IP  L   D+ G+AQTGTGKTA+F +P++
Sbjct: 2   MTFKQMNISEPVCRALLEKNYSTPTLIQEQAIPEALTGRDLLGLAQTGTGKTAAFAVPII 61

Query: 61  TIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L      + +   R  R LIL PTRELA Q+ ++   Y +   L   ++ GG+  ++Q
Sbjct: 62  EQLLAAPMPQRKGAPRSIRALILTPTRELAIQIDESLADYTRYTTLRHTVIFGGVKQKSQ 121

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G D+L  TPGR+LD  ++G + ++++   V+DEADRMLDMGFI  ++ +   +P
Sbjct: 122 TDELRAGTDILTATPGRLLDLMSQGFIRLDDVRHFVLDEADRMLDMGFIHDVKRLLPKLP 181

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +QTL FSATM D + +++++ L NP R+EV   SS  E I         +  +K  LL
Sbjct: 182 PKKQTLFFSATMPDSIDRLAKSLLHNPARVEVTPASSVVEIISQSVY--RVEKPQKKELL 239

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            QLL  +   +  ++F   K    N+   L ++G +  +IHG+  Q +R + LSNFKEG 
Sbjct: 240 AQLLLGEAGHQV-LVFSRTKHGADNIARYLSRRGIACESIHGDKSQNARQRALSNFKEGR 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +++A+D+AARG+DI  +  V NFD+P+  E Y+HRIGRTGRAG  G+A    + E+  
Sbjct: 299 SNVIIATDIAARGIDIKGLDLVLNFDLPDVPETYVHRIGRTGRAGCEGRAIAFCSSEEAP 358

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKI------DIAQHNHARKNNPIPQKSTGFDRR 409
            +  IEKL   K+     +L SL  P          +IA  + +R     PQ +   + R
Sbjct: 359 MLREIEKLTGIKLVQQKHNLPSLGEPAASPTTSSAQNIALKSQSRTQGGRPQNNRRREDR 418

Query: 410 KK 411
           K+
Sbjct: 419 KR 420


>gi|148263018|ref|YP_001229724.1| DEAD/DEAH box helicase domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146396518|gb|ABQ25151.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
           Rf4]
          Length = 451

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 150/381 (39%), Positives = 226/381 (59%), Gaps = 9/381 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L  +V+  +   G+ + TPIQ K +P  L   DV G AQTGTGKTA+F++ + 
Sbjct: 1   MKFTDLNLPEQVLQGIAYTGFTECTPIQEKALPPALAGKDVAGQAQTGTGKTAAFLISLF 60

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           T L K         PR LIL PTREL  Q+  + ++ GK+   T+  + GG+ +  Q   
Sbjct: 61  TRLLKQEKVGTEHHPRALILAPTRELVVQIEKDAQQLGKHTGFTIQAIYGGVDYMKQKNA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPF- 176
           L+ G D++I TPGR++D+  +    + NIE LVIDEADRM DMGFI  ++ I   L PF 
Sbjct: 121 LKEGVDIVIGTPGRLIDYLKQKVYSLKNIEALVIDEADRMFDMGFIADLRFILRRLPPFD 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ L+FSAT+   + +++  F+  P+++ V     TAE +E   V  +    +K  LL 
Sbjct: 181 ERQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQ--VIYHVSRKEKFPLLL 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL+ ++ M+  +IF N K+    L   L    F    I G+++QR R++IL +FK G +
Sbjct: 239 GLLR-KEGMERTMIFVNTKREAEFLFDRLNVNDFPARVISGDVEQRKRLRILEDFKSGKL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +M+A+D+A+RGL I  V HV N+D+P  AE+Y+HRIGRT RAG  GKA +L  ++   +
Sbjct: 298 PIMIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISLADEDGALY 357

Query: 357 IDAIEKLIEKK--VDWLNGDL 375
           ++ I + I+++  V+W   +L
Sbjct: 358 LEDIHEYIKERIPVEWAEDEL 378


>gi|323497187|ref|ZP_08102207.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
 gi|323317762|gb|EGA70753.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
          Length = 419

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 151/384 (39%), Positives = 230/384 (59%), Gaps = 11/384 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LGLS  ++  +   G+  PT +Q ++IP +L   DV   AQTGTGKTA+F LP++ 
Sbjct: 4   EFESLGLSQPLLTTLNTLGFTTPTQVQQQSIPHILLGKDVLAGAQTGTGKTAAFGLPIIQ 63

Query: 62  ILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L +  + VR P     R L+L PTRELA QV DN  +Y ++  L +    GG     Q 
Sbjct: 64  QLIQSES-VRDPQGNDVRALVLVPTRELAQQVYDNLVQYAESTPLKIVTAYGGTSINVQT 122

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L +G D+LI TPGR++DH     + +   E LV+DEADRMLDMGF+P IQ I      
Sbjct: 123 RNLHQGCDILIVTPGRLIDHMFCKNVSLAKTEYLVLDEADRMLDMGFMPDIQRILKRFNP 182

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSAT    ++ ++    ++P  I+V+  +STAET++           +K  LL 
Sbjct: 183 ERQTLFFSATFDKRIKNIAYKLQKDPIEIQVSPSNSTAETVKQMVYP--VDKKRKAELLA 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L+ S++  +  ++F   K+    L   L+  G    +I+G+  Q +R K L +FK G +
Sbjct: 241 YLIGSRN-WQQVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGKV 299

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++   
Sbjct: 300 RALIATDVAARGLDINQLEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAVSLMSQDEHYL 359

Query: 357 IDAIEKLIEKKV--DWLNGDLSSL 378
           ++AIE+L++ ++  +WL G   SL
Sbjct: 360 LEAIERLLDTRLPQEWLQGFEPSL 383


>gi|170760570|ref|YP_001788120.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169407559|gb|ACA55970.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 524

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 144/384 (37%), Positives = 235/384 (61%), Gaps = 7/384 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L L+  V+ A+   G+  P+ IQ K+IP+VL+  DV   AQTGTGKT +F  P+++
Sbjct: 5   NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +  + L+L PTRELA Q+ D  ++  K     V  + GG   E Q K ++ 
Sbjct: 65  SLCDNEKK-KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKS 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGRILDH NR  L +  I+ L++DEAD ML+MGFI  I+ I    P  +QT+
Sbjct: 124 GVDIVVGTPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTPEEKQTM 183

Query: 182 LFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSATM   ++K++ N++ ++ + I +   S T + I   + A   +   K   + +++ 
Sbjct: 184 LFSATMPAAIKKLALNYMKEDVEHIAILKKSLTVDKIAQHYFA--VKNKDKLEAICRIID 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++  ++ IIFC  K+ V  L  +++ +G++V  +HG++ Q  R+  L  FK+ T+  +V
Sbjct: 242 SEEP-ESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HV N+D+P  AE+Y+HRIGRTGRA + G A++LV   ++  I  I
Sbjct: 301 ATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E++ + K+     +L +L   LEK
Sbjct: 361 ERITKSKI--TKKELPTLEDILEK 382


>gi|168015786|ref|XP_001760431.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688445|gb|EDQ74822.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 675

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 143/367 (38%), Positives = 223/367 (60%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  +GL P ++  +  AG+  PTPIQ ++ P+ +Q  D+  IA+TG+GKT  +++P  
Sbjct: 155 LSFEAVGLPPDMLREIQAAGFKSPTPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPAF 214

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             LE+ R   R+ P  L++ PTRELA Q+ +   K+G++  +T   + GG P   Q + +
Sbjct: 215 LHLERHRNNSRLGPSVLVIAPTRELATQIQEECVKFGRSSRITSTCVYGGAPKGPQLRDI 274

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGAD++I TPGR+ D     K+ +  +  LV+DEADRMLDMGF P I+ I + +   RQ
Sbjct: 275 ERGADIVIATPGRLNDFLEVKKISLRQVSYLVLDEADRMLDMGFEPQIRKIVNEILSRRQ 334

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           TL+++AT   E++K++ + L NP ++ + NT   +A       V     Y K+   L+Q+
Sbjct: 335 TLMYTATWPKEVRKIAGDLLINPVQVNIGNTDELSANKSITQHVEVVVPYEKQ-RRLEQI 393

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+SQ+     I+FC+ K+    L  +L +  F   AIHG+  Q  R  +LS F+ G   +
Sbjct: 394 LRSQEPGSKIIVFCSTKRMCDMLSRNLGRD-FGAAAIHGDKSQSERDFVLSQFRTGRTPI 452

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G A+T  +++D K+  
Sbjct: 453 LVATDVAARGLDIKDIRFVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFSEQDGKYAK 512

Query: 359 AIEKLIE 365
            + K++E
Sbjct: 513 ELIKVLE 519


>gi|226229150|ref|YP_002763256.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
 gi|226092341|dbj|BAH40786.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
          Length = 498

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 150/390 (38%), Positives = 222/390 (56%), Gaps = 9/390 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P +   + + G+ +PTPIQ + IP  L+  DV   A TG+GKT +F+LP+L
Sbjct: 3   MTFSSLQLHPSLQQGLKELGFARPTPIQGEAIPPALEGRDVLACAMTGSGKTYAFLLPIL 62

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++ K R   R    L+L PTRELAAQ+ ++ +    +  LT A + GG+    Q    
Sbjct: 63  HQLMSKPRGNTR---ALVLTPTRELAAQILESLQDVTTHTPLTGAAVFGGVGMGPQEHAF 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTR 178
             G DV++ TPGR+LDHF +    ++ +E LV+DEADRMLDMGF+P I+ I   +P   R
Sbjct: 120 RSGVDVIVATPGRLLDHFRQPYAKLDQLEYLVLDEADRMLDMGFLPEIKKILRHLPNRKR 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM   +  +++  L  P  + +   ++ A+ I         +   K ALL  L
Sbjct: 180 QTLFFSATMPPPIAALTQEMLNKPVTLNLQRQAAPAKGITQAVYPVSQEL--KSALLVAL 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+  D M   ++F   K     L   L   G     IHGN  Q  R + L+ FK+G+ Q+
Sbjct: 238 LKRGD-MPQALVFTRTKHRANRLASQLVTAGIKAERIHGNRSQSQRTQALAGFKDGSYQV 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  +GHV NFDVP  AE+YIHR+GRT RA   G+AFT V+ E+   + 
Sbjct: 297 LVATDIAARGIDVEALGHVVNFDVPVAAEDYIHRVGRTARAEATGEAFTFVSPEEEGELK 356

Query: 359 AIEKLIEKKVDWLN-GDLSSLNPPLEKIDI 387
            IE+ I++ +  +   D      P +K+++
Sbjct: 357 LIERAIKRALPRVTVPDFDYHAKPTQKLEV 386


>gi|154509558|ref|ZP_02045200.1| hypothetical protein ACTODO_02090 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799192|gb|EDN81612.1| hypothetical protein ACTODO_02090 [Actinomyces odontolyticus ATCC
           17982]
          Length = 581

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 141/370 (38%), Positives = 217/370 (58%), Gaps = 9/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD G++  +V A+ D G   P PIQ  T+   L+RHD+ G A+TGTGKT  F +P+L  
Sbjct: 65  FADFGVTDPIVDALEDQGITHPFPIQALTLGPALERHDIIGQAKTGTGKTLGFGIPVLED 124

Query: 63  L----EKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    E+G   +     P+ LI+ PTREL  QVA +  +  K  +  +  + GG+ FE Q
Sbjct: 125 VIAPDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLREAAKYLSTRIVEIYGGVAFEPQ 184

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + LERGAD+++ TPGR++D   +G L ++ +E +V+DEAD MLD+GF+P ++ + S VP
Sbjct: 185 IEALERGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVETLLSRVP 244

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234
             R T+LFSATM   +  ++  F+  P  I    P    +T+       Y  ++  K  +
Sbjct: 245 ENRHTMLFSATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNTVKQVIYRVHAMNKVEV 304

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + ++LQ++   +  +IFC  K+    L   L  +GF+V ++HG++ Q +R + L  F+ G
Sbjct: 305 VARILQAEGRGRT-VIFCRTKRTAARLGEDLTARGFAVGSLHGDLGQGAREQALRAFRNG 363

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+  P   + YIHRIGRTGRAG  G A T V  +D 
Sbjct: 364 KVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGNSGTAVTFVDWDDT 423

Query: 355 KHIDAIEKLI 364
                I K +
Sbjct: 424 PRWSLISKAL 433


>gi|313885567|ref|ZP_07819317.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619297|gb|EFR30736.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 526

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 146/385 (37%), Positives = 230/385 (59%), Gaps = 14/385 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DL L  +++  + + G+ +PTPIQ + IP VLQ  D+ G AQTGTGKTA+F LPML
Sbjct: 1   MKFSDLNLKTELIETLDELGFEEPTPIQQQAIPFVLQGRDLVGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+      R  + LI+ PTRELA QV D      K     V  + GG     Q  +++
Sbjct: 61  QGLDTDH---RALQALIIAPTRELAIQVHDELYSLSKGLKTKVYAVYGGYSIGKQIDRIQ 117

Query: 121 R-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    V++ TPGR+LD   R  +  + ++ L++DEAD ML+MGFI  I+ I    P +RQ
Sbjct: 118 KLKPQVIVGTPGRLLDLMRRQIIDTSYLKTLIMDEADEMLNMGFIEDIKAIVEQTPSSRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSATM   +Q +++ FL  P  +++     TA+ I+  FV    + S+K  +L ++L
Sbjct: 178 TLMFSATMPKSVQNLAQQFLTQPAEVKIEAKHLTADLIDQYFVK--CRDSEKFDILTRML 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   K  IIF   KK V  +   L  +G+    IHG++ Q+ R ++++ FK+G ++L+
Sbjct: 236 DIESPDK-AIIFARTKKRVDEIGRGLSLRGYDAELIHGDVTQQKRTQVMNEFKQGRLELL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV+N+D+P   E+Y+HRIGRTGRAG  G++ T V + ++ ++  
Sbjct: 295 VATDVAARGIDVSGVTHVYNYDIPQDPESYVHRIGRTGRAGNEGQSVTFVMESELPYLRT 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE L + +       ++ + PP ++
Sbjct: 355 IESLTKNQ-------MTPMRPPTDQ 372


>gi|227538389|ref|ZP_03968438.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241771|gb|EEI91786.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 603

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 142/366 (38%), Positives = 233/366 (63%), Gaps = 8/366 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHD-VCGIAQTGTGKTASFVLPMLT 61
           F +LG+  +VV A+ + G+ KP+PIQ K IP++L  +D   G+AQTGTGKTA+F LP+L 
Sbjct: 4   FLELGIRHEVVNAISELGFEKPSPIQEKAIPVLLTGNDDFVGLAQTGTGKTAAFGLPLLE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L+  +   + P+ L+L PTREL  Q+A + EK+ K  + + V  + GG     Q +++ 
Sbjct: 64  QLDFSQ---KHPQALVLCPTRELCLQIAKDLEKFAKYIDDVHVVAVYGGANISDQLRQIR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  +  +N++ +V+DEAD ML+MGF   I NI S  P  ++T
Sbjct: 121 RGVQIVVATPGRMLDIIGRNAIDFSNVKYVVLDEADEMLNMGFQEDINNILSETPEEKKT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E++++++N++ +P  + V T ++    IEH +    A+   K A  ++++ 
Sbjct: 181 WLFSATMPREVRRIAQNYMTDPVELTVGTKNTGNANIEHHYYLIRAK--DKYAAFKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S   +  GI+FC  K     +  +L K G++  ++HG++ Q+ R K++  +++ ++QL++
Sbjct: 239 SNPEI-FGIVFCRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRDRSLQLLI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV HV NF +P+  ENY HR GRT RAG+ G + +LV  +++  I  I
Sbjct: 298 ATDVAARGIDVNDVTHVINFSLPDEVENYTHRSGRTARAGKTGISLSLVNVKELSKIRHI 357

Query: 361 EKLIEK 366
           EK+I K
Sbjct: 358 EKIIGK 363


>gi|298387076|ref|ZP_06996630.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           1_1_14]
 gi|298260226|gb|EFI03096.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           1_1_14]
          Length = 647

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 142/367 (38%), Positives = 228/367 (62%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP+L 
Sbjct: 4   FEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            ++    + R+P++LIL PTREL  Q+A +   Y K  + L V  + GG   ++Q + L+
Sbjct: 64  QID---VKNRVPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  + ++ +  +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTVHNIVMDEADEMLNMGFTDSINAILADVPKERNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+ ++S+N+LQN K I +   + +   ++H  VA   Q   K A L++++ 
Sbjct: 181 LLFSATMSPEIARISKNYLQNAKEITIGRKNESTSNVKH--VAYTVQAKDKYAALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+V
Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKLREI 357

Query: 361 EKLIEKK 367
           E++I KK
Sbjct: 358 ERIIGKK 364


>gi|29348712|ref|NP_812215.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340618|gb|AAO78409.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 647

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 142/367 (38%), Positives = 228/367 (62%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP+L 
Sbjct: 4   FEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            ++    + R+P++LIL PTREL  Q+A +   Y K  + L V  + GG   ++Q + L+
Sbjct: 64  QID---VKNRVPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  + ++ +  +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTVHNIVMDEADEMLNMGFTDSINAILADVPKERNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+ ++S+N+LQN K I +   + +   ++H  VA   Q   K A L++++ 
Sbjct: 181 LLFSATMSPEIARISKNYLQNAKEITIGRKNESTSNVKH--VAYTVQAKDKYAALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+V
Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKLREI 357

Query: 361 EKLIEKK 367
           E++I KK
Sbjct: 358 ERIIGKK 364


>gi|327538177|gb|EGF24861.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
           baltica WH47]
          Length = 449

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 149/365 (40%), Positives = 218/365 (59%), Gaps = 5/365 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LSP +  AV DAG+  P+PIQ   IP  L   DV G A+TGTGKTA+F +P+L  
Sbjct: 43  FDELDLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPILEQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+      R P+ +++ PTRELA QVA   E+        +A+L GG     Q ++LE G
Sbjct: 103 LDSLED-CRDPQAIVIVPTRELADQVAAEAERLASGVPTEIAVLSGGKNMNRQLRQLENG 161

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ DH  RG L  NN+  +V+DEADRMLD+GF P I+ I    P  RQTLL
Sbjct: 162 TQLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRMLDIGFRPQIERIMRKCPRNRQTLL 221

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+   +++++E+++  P  I+        +TIE  +  T AQ   K  LL+ LL+ +
Sbjct: 222 LSATLPPVVRRLAESYMHEPVVIDCCRDEMAVDTIEQRYF-TIAQ-DDKVRLLESLLK-R 278

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC-AIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +  IIFC  K+    L   L  +  S C AIHG++ QR R ++L   ++G ++ +VA
Sbjct: 279 EKPEQAIIFCRTKRGTDRLHRKLSHEYGSACGAIHGDLQQRERDRVLQKLRDGNLKFLVA 338

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+  RG+DI  + H+ NFDVP   ++Y+HR+GRTGR GR G A+T V   +   + +IE
Sbjct: 339 TDVVGRGIDISTISHIVNFDVPQDCDDYVHRVGRTGRMGRDGVAYTFVVPGEGDILTSIE 398

Query: 362 KLIEK 366
           + I K
Sbjct: 399 QRINK 403


>gi|327400905|ref|YP_004341744.1| DEAD/DEAH box helicase domain-containing protein [Archaeoglobus
           veneficus SNP6]
 gi|327316413|gb|AEA47029.1| DEAD/DEAH box helicase domain protein [Archaeoglobus veneficus
           SNP6]
          Length = 389

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 146/376 (38%), Positives = 233/376 (61%), Gaps = 23/376 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+++ LS  ++  +   G  +PT IQ K IPLV +  DV   ++TG+GKT +F +P++
Sbjct: 3   LKFSEMNLSEGMLGLLEMHGIEEPTEIQTKAIPLVEKGFDVVAQSETGSGKTLAFAIPII 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E G+      + L+L PTRELA Q+ + F ++ ++  L +A + GG+P E Q + L 
Sbjct: 63  EAAETGKG----IQALVLTPTRELANQIENEFRRFSRHKGLRIANIHGGVPIEPQIRDLR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R ADV++ TPGR+LDH  R  +  + +E  VIDEADRMLDMGFI  ++ I    P TRQ+
Sbjct: 119 R-ADVVVGTPGRLLDHVRRKTVDFSRVEYFVIDEADRMLDMGFIDDVKAIMRCTPKTRQS 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY---AQYSKKCALLQQ 237
           LLFSAT+  E++ ++  +++NPK I       T E ++   +  Y      S+K ++L  
Sbjct: 178 LLFSATIPPEVRALASRYMKNPKTIR------TKELVDPKLLNQYYYDVDDSEKFSMLVH 231

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ ++  K  ++F N +K    +  +L   GF    +HG + Q  R +++  F++G I+
Sbjct: 232 LLRKENP-KKALVFTNMRKTSDIVAKNLFMHGFKASVLHGGLTQSKRDRMMERFRKGEIR 290

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---- 353
           ++VA+D+A+RGLD+  V HVFN+DVP++AE+YIHRIGRT RAG++GKA T++ ++D    
Sbjct: 291 VLVATDVASRGLDVKGVTHVFNYDVPSKAEDYIHRIGRTARAGKNGKAVTILGRKDHGSF 350

Query: 354 ----IKHIDAIEKLIE 365
               +K+   IE+L E
Sbjct: 351 RRIMVKYGLTIERLEE 366


>gi|322420162|ref|YP_004199385.1| DEAD/DEAH box helicase domain-containing protein [Geobacter sp.
           M18]
 gi|320126549|gb|ADW14109.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18]
          Length = 477

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 149/381 (39%), Positives = 223/381 (58%), Gaps = 9/381 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   V+  + + G+   TPIQ K +PL L   DV G AQTGTGKTA+F++ + 
Sbjct: 1   MKFTELQLPDLVLKGIEETGFTDCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIF 60

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           T L  ++       PR LIL PTREL  Q+  + +  GK     +  + GG+ +  Q   
Sbjct: 61  TRLLNQQKTGAEHHPRALILAPTRELVVQIEKDAQTLGKYTGFNIQAIYGGVDYMKQRDA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-- 176
           L+ GAD++I TPGR++D+  +    + ++E LVIDEADRM DMGFI  ++ I   +P   
Sbjct: 121 LKAGADIVIGTPGRLIDYLKQKVYSLKDVEALVIDEADRMFDMGFIADLRFILRRLPTYD 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT+   + +++  F+  P+++ V     TAE +E   V  +A   +K  LL 
Sbjct: 181 KRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPEQMTAERVEQ--VLYHASRKEKFPLLL 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL+    M+  +IF N K+    L   L    F    I G+++QR RMKILS+FK G +
Sbjct: 239 GLLRKMG-MERTMIFVNTKREAEYLQDRLNANEFPCKVISGDVEQRKRMKILSDFKAGIL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +M+A+D+A+RG+ I  V HV N+D+P   E+Y+HRIGRT RAG  G A +L  ++   +
Sbjct: 298 PIMIATDVASRGIHIEGVSHVINYDLPQDCEDYVHRIGRTARAGAEGMAISLADEDGAFY 357

Query: 357 IDAIEKLIEKKV--DWLNGDL 375
           I+AI+  I++K+  +W   D+
Sbjct: 358 IEAIQDFIKQKIPTEWAEDDM 378


>gi|304310488|ref|YP_003810086.1| ATP-dependent RNA helicase [gamma proteobacterium HdN1]
 gi|301796221|emb|CBL44429.1| ATP-dependent RNA helicase [gamma proteobacterium HdN1]
          Length = 527

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 225/371 (60%), Gaps = 4/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+DLGL+ ++V  +   GY + TP+Q   IP  LQ  D+   + TG+GKTA+F+LP L
Sbjct: 1   MNFSDLGLNTRLVSTLQALGYEQATPVQQLAIPAALQGGDLLASSHTGSGKTAAFLLPCL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
             +++  + +    R L+L PTRELA Q+      YG+    L  A L+GG  +  Q K 
Sbjct: 61  QRMIDDPKPKSGAARMLVLTPTRELALQIEKAARNYGREVRRLNTACLVGGSSYFMQLKD 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R  ++LI TPGR+LDH  RG++ ++ IE LV+DEADRMLDMGF   I+ I +     R
Sbjct: 121 LGRQPEILIATPGRLLDHIERGRVDLSQIETLVLDEADRMLDMGFSDDIEAIVAETNPER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATM   +  ++    ++P+RIE+         IE   +      + K  LL  L
Sbjct: 181 QTMLFSATMEGVVGALARKLTRDPQRIEIEKKPEQQAKIEQKLMMA-DDLAHKNRLLGAL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ + ++   ++F   K+   +L ++L  +GFSV A+HG++ Q+ R + L+  ++G I +
Sbjct: 240 LRDE-SLNQAVVFTATKRAAEDLSNTLRDEGFSVEALHGDMHQKLRNRTLTKLRQGRIGI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + HV N+D P + E+Y+HRIGRTGRAGR G A TL   ++ + I 
Sbjct: 299 LVATDVAARGIDVVGISHVINYDPPRQVEDYVHRIGRTGRAGRTGTAVTLAEFKERRIIR 358

Query: 359 AIEKLIEKKVD 369
            IE+   + ++
Sbjct: 359 DIERFTGQPIE 369


>gi|302521780|ref|ZP_07274122.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces sp.
           SPB78]
 gi|302430675|gb|EFL02491.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces sp.
           SPB78]
          Length = 485

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 145/378 (38%), Positives = 224/378 (59%), Gaps = 22/378 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F DLG+ P+   A+   G V P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L  
Sbjct: 11  FRDLGILPETAEALEAVGIVSPFPIQSLTLPVALSGSDVIGQAKTGTGKTLGFGLPLLER 70

Query: 61  -TI---LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            T+   +E GRA        P+ L++ PTREL  QV ++ +  GK  ++ V  + GG  +
Sbjct: 71  VTVSADVEAGRATPDKLSEAPQALVVVPTRELCTQVTNDLQTAGKVRDVRVLAIYGGRAY 130

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E Q + L++G DV++ TPGR+LD   + KL ++ +  LV+DEAD MLD+GF+P ++ I +
Sbjct: 131 EPQVEALKKGVDVVVGTPGRLLDLAGQRKLDLSKVRALVLDEADEMLDLGFLPDVEKIVA 190

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP----SSTAETIEHCFVATYAQY 228
           ++P  RQT+LFSATM   +  ++  ++  P  I   +P    ++ A T +H F    A  
Sbjct: 191 MLPVKRQTMLFSATMPGAVVALARRYMSQPTHINATSPDDENATVANTEQHVF---RAHS 247

Query: 229 SKKCALLQQLLQSQDTMKNGI--IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
             K  ++ ++LQ++     G+  IFC  K+   ++   L+++GF+  A+HG++ Q +R +
Sbjct: 248 MDKPEMVARILQAEG---RGLVMIFCRTKRTAADISEQLQRRGFAAGAVHGDLGQGAREQ 304

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G + ++V +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAGR G A 
Sbjct: 305 ALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQTPEDEKTYLHRIGRTGRAGRSGTAV 364

Query: 347 TLVAKEDIKHIDAIEKLI 364
           TLV  +DI     I K +
Sbjct: 365 TLVDWDDIPRWQLINKAL 382


>gi|300770793|ref|ZP_07080671.1| DEAD/DEAH box family ATP-dependent RNA helicase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762350|gb|EFK59168.1| DEAD/DEAH box family ATP-dependent RNA helicase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 603

 Score =  273 bits (698), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 142/366 (38%), Positives = 233/366 (63%), Gaps = 8/366 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHD-VCGIAQTGTGKTASFVLPMLT 61
           F +LG+  +VV A+ + G+ KP+PIQ K IP++L  +D   G+AQTGTGKTA+F LP+L 
Sbjct: 4   FLELGIRHEVVNAISELGFEKPSPIQEKAIPVLLTGNDDFVGLAQTGTGKTAAFGLPLLE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L+  +   + P+ L+L PTREL  Q+A + EK+ K  + + V  + GG     Q +++ 
Sbjct: 64  QLDFSQ---KHPQALVLCPTRELCLQIAKDLEKFAKYIDGVHVVAVYGGANISDQLRQIR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  +  +N++ +V+DEAD ML+MGF   I NI S  P  ++T
Sbjct: 121 RGVQIVVATPGRMLDIIGRNAIDFSNVKYVVLDEADEMLNMGFQEDINNILSETPEEKKT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E++++++N++ +P  + V T ++    IEH +    A+   K A  ++++ 
Sbjct: 181 WLFSATMPREVRRIAQNYMTDPVELTVGTKNTGNANIEHHYYLIRAK--DKYAAFKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S   +  GI+FC  K     +  +L K G++  ++HG++ Q+ R K++  +++ ++QL++
Sbjct: 239 SNPEI-FGIVFCRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRDRSLQLLI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV HV NF +P+  ENY HR GRT RAG+ G + +LV  +++  I  I
Sbjct: 298 ATDVAARGIDVNDVTHVINFSLPDEVENYTHRSGRTARAGKTGISLSLVNVKELSKIRHI 357

Query: 361 EKLIEK 366
           EK+I K
Sbjct: 358 EKIIGK 363


>gi|319654684|ref|ZP_08008763.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
 gi|317393600|gb|EFV74359.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
          Length = 472

 Score =  273 bits (698), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 140/364 (38%), Positives = 225/364 (61%), Gaps = 8/364 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ + TPIQ +TIPL L+  D+ G AQTGTGKTA+F +PM+  ++  +  ++    +++ 
Sbjct: 2   GFEEATPIQAQTIPLSLENKDLIGQAQTGTGKTAAFGIPMIDKIDNTKDFIQ---GIVIA 58

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA QV++   K G      V  + GG     Q + L+    +++ TPGRILDH NR
Sbjct: 59  PTRELAIQVSEELYKIGYGKRTKVLSIYGGQDINRQIRALKNKPHIIVGTPGRILDHINR 118

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
             + ++++   ++DEAD ML+MGFI  I+ I + +P  RQTLLFSATM   +++++E F+
Sbjct: 119 KTMRLDHVHTAILDEADEMLNMGFIDDIEAILAQIPEERQTLLFSATMPAPIRRMAERFM 178

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
           + P+ + V     T  +IE  ++  + +   K  +L +LL  Q + +  I+F   K+ V 
Sbjct: 179 KEPQIVRVKAKEMTVSSIEQYYIEVHEK--NKFDVLTRLLDIQ-SPELAIVFGRTKRRVD 235

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            L  +L  +G+    IHG++ Q  R+ +L  FKEG+I ++VA+D+AARGLDI  V HV+N
Sbjct: 236 ELAEALNLRGYMAEGIHGDLSQAKRISVLRKFKEGSIDVLVATDVAARGLDISGVTHVYN 295

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           FD+P   E+Y+HRIGRTGRAG+ G A T +   +  ++  +E+  ++K++ +  D  +L+
Sbjct: 296 FDIPQDPESYVHRIGRTGRAGKTGVAMTFINPREKSYLHVVERTTKRKMERM--DAPTLD 353

Query: 380 PPLE 383
             LE
Sbjct: 354 EALE 357


>gi|119357571|ref|YP_912215.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354920|gb|ABL65791.1| ATP-dependent RNA helicase CsdA [Chlorobium phaeobacteroides DSM
           266]
          Length = 589

 Score =  273 bits (698), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 141/372 (37%), Positives = 224/372 (60%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L L   ++ A+ + GY  PTPIQ +TIPL+L+  D+ G AQTGTGKTA+F LP+L+
Sbjct: 10  NFRSLQLIEPLMKALEEVGYENPTPIQAQTIPLLLEGRDLLGQAQTGTGKTAAFALPILS 69

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            +   R   R P+ L+L PTRELA QVA+ F +Y +      V  + GG  +  Q + L+
Sbjct: 70  NITIAR---REPQALVLAPTRELAIQVAEAFHRYAEYLKGFHVLPIYGGQDYGIQLRMLK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR++DH  RG L ++ ++ LV+DEAD ML MGFI  ++ I    P  RQ 
Sbjct: 127 QGVHVVVGTPGRVMDHMRRGSLNLDGLQCLVLDEADEMLRMGFIDDVEWILDQTPKGRQV 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT+   ++++++ +L NP  I +   ++T E I   +       S K  +L ++L+
Sbjct: 187 ALFSATLPVPIRRIAQKYLNNPAEITIQNKTTTVEAIRQRYWIVGG--SHKLDVLTRILE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     +IF   K   + L   L+ +G+   A++G++ Q  R + +   K G + +++
Sbjct: 245 V-EPFDGILIFVRTKTMTLELAEKLQARGYDASALNGDMAQNMRERTVEQLKSGALNIVI 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G+A   V+  +   + AI
Sbjct: 304 ATDVAARGLDVDRISHVINYDIPSDTESYVHRIGRTGRAGRSGEAILFVSPREKNMLYAI 363

Query: 361 EKLIEKKVDWLN 372
           EK   K+++ + 
Sbjct: 364 EKATRKRIELME 375


>gi|134095506|ref|YP_001100581.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
 gi|133739409|emb|CAL62459.1| Putative ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
          Length = 468

 Score =  273 bits (698), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 147/393 (37%), Positives = 231/393 (58%), Gaps = 29/393 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   ++ A+ ++GY  PT +Q + IP  ++  D+   +QTG+GKTA+F+LP L
Sbjct: 1   MTFESLGLHASIIKALTESGYTAPTGVQAQAIPAAIEGRDMMVSSQTGSGKTAAFMLPAL 60

Query: 61  TIL---------EKGR--------ARVR---------MPRTLILEPTRELAAQVADNFEK 94
                       E GR        AR R          P+ L+L PTRELA QV  + +K
Sbjct: 61  HKFAVQSEQQQPEGGRTPNQEAQSARSRGDRPRFKAAQPKMLVLTPTRELALQVTTSTDK 120

Query: 95  YGKNYNLTVAL-LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVID 153
           YG       A+ ++GG+P+  Q + L +  ++L+ TPGR++DH   GK+  + ++ILV+D
Sbjct: 121 YGAFMKRVKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSELQILVLD 180

Query: 154 EADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
           EADRMLDMGFI  I+ I +  P  RQT+LFSAT+   +  +++   ++P  I++   ++ 
Sbjct: 181 EADRMLDMGFIDDIEKIVAATPEGRQTMLFSATLDGTVGTMAKRITKDPLVIQIAGSATK 240

Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            E I+   V      S K  LL  LL+ + TM   ++F   K++   +   L   GF+  
Sbjct: 241 HENIKQG-VHFVDDLSHKNRLLDHLLRDE-TMDQAVVFTATKRDADTIADRLNIAGFAAA 298

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
           A+HG++ Q +R + L   + G I+++VA+D+AARG+D+P + HVFN+D+P   E+Y+HRI
Sbjct: 299 ALHGDMHQGARNRTLDGLRRGQIRVLVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 358

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           GRTGRAGR+G A +LV   +  ++  IE+ I++
Sbjct: 359 GRTGRAGRNGIAVSLVNHAEGMNVKRIERFIKQ 391


>gi|260582883|ref|ZP_05850668.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
 gi|260094096|gb|EEW77999.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
          Length = 613

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 229/369 (62%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L  
Sbjct: 7   FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLLAQ 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121
           ++      + P+ L++ PTRELA QVAD  E + K    T +  L GG  ++ Q + L++
Sbjct: 67  IDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   QT 
Sbjct: 124 GAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240
           LFSATM + ++++++ F+ +P+ +++   +  A  I+  C+   Y    +K   L + L+
Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++V
Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 361 EKLIEKKVD 369
           E L++K ++
Sbjct: 360 EHLMKKGIN 368


>gi|226943135|ref|YP_002798208.1| DEAD/DEAH box ATP-dependent RNA helicase [Azotobacter vinelandii
           DJ]
 gi|226718062|gb|ACO77233.1| DEAD/DEAH box ATP-dependent RNA helicase [Azotobacter vinelandii
           DJ]
          Length = 434

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 145/368 (39%), Positives = 220/368 (59%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  +   GY+ PTP+Q + IP +L   D+   AQTG+GKTA F LP+L
Sbjct: 1   MTFAYLGLIKPLLRTLPVLGYILPTPVQRQAIPALLAGRDLLVAAQTGSGKTAGFALPVL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               LE   A     R L+L PTRELA QV       G    L  A+  GG+    Q   
Sbjct: 61  QRLTLEGSPAAANSVRALVLVPTRELAEQVHGTIRACGMELPLRTAVAYGGVSINPQMML 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G DVL+ TPGR+LD + +  +  + ++ILV+DEADRMLD+GF   ++ +  L+P  R
Sbjct: 121 LRPGIDVLVATPGRLLDLYRQNAVRFDQLQILVLDEADRMLDLGFSRELEELFVLLPAQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLL SAT ++E+++++   L++P  IE++ P+S A ++    +       +K  L   L
Sbjct: 181 QTLLCSATFSEEIRQIATGLLRDPLTIEISAPNSAAPSVAQWMIPV--DKKRKAELFLHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ ++  +  ++F   +K V  L   L+++G+   AIHG++ Q +R++ L  FK   +Q+
Sbjct: 239 LE-RERWEQVLVFSRTRKGVERLAEELQQRGYRAGAIHGDLPQPARLRALEQFKADELQV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  +  V N D+P   E Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIQGLPLVVNLDLPVAPEYYVHRIGRTGRAGASGEAISLVCADEVEQLA 357

Query: 359 AIEKLIEK 366
           AIE LI +
Sbjct: 358 AIEALIRQ 365


>gi|281358292|ref|ZP_06244774.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281315119|gb|EFA99150.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 542

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 151/368 (41%), Positives = 225/368 (61%), Gaps = 8/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L   V   +  AG+   TPIQ  T+P +L+  D+ G AQTGTGKTA+F+L + T 
Sbjct: 127 FLDLPLHEDVQFGIQHAGFEYCTPIQALTLPALLEGRDLAGKAQTGTGKTAAFLLAVFTR 186

Query: 63  LEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L       R P   R L+L PTRELA Q+  + E       LT  ++ GG+  E Q + L
Sbjct: 187 LLNHPLEERKPGCPRALVLAPTRELAMQIQKDAEVLEIFTGLTSVVVFGGMDHEKQRRSL 246

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177
           E+  D++I TPGRI+D+   G L ++ +E+LVIDEADRMLDMGFIP ++ I S +P    
Sbjct: 247 EQPVDLVIGTPGRIIDYSRGGSLKLSKVEVLVIDEADRMLDMGFIPDVKRIVSQLPRKGE 306

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT+ D + +++  +L  P  +E       +E IE  F +      +K ALL  
Sbjct: 307 RQTLLFSATLEDHILRLASGWLAEPVIVESEPEKMVSENIEQTFYSVL--RDEKLALLLY 364

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+++      +IF N+K   + L + L + G+ V  + G+I Q  R+K+L  F+ GT +
Sbjct: 365 ILRTE-PYDRVLIFGNRKDVNLRLQYDLARFGYEVPVLSGDIPQEKRIKVLERFRAGTEK 423

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARG+ + DV  V N+D+P RAE+Y+HRIGRTGRAG +GK+ + + +    ++
Sbjct: 424 IVIATDVAARGIHVDDVSLVINYDLPERAEDYVHRIGRTGRAGHNGKSISFLCEYGAYYL 483

Query: 358 DAIEKLIE 365
             IEKL++
Sbjct: 484 PDIEKLLD 491


>gi|54303428|ref|YP_133421.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46916858|emb|CAG23621.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
          Length = 385

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 139/323 (43%), Positives = 208/323 (64%), Gaps = 4/323 (1%)

Query: 40  DVCGIAQTGTGKTASFVLPMLTIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
           ++   AQTGTGKTASFVLP+L    +    R +  R LIL PTRELA QV  N  +Y K+
Sbjct: 5   NLIAAAQTGTGKTASFVLPLLEKFSDMPPIRAKRIRALILVPTRELAVQVDANITQYSKH 64

Query: 99  YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
            +LT   + GG+ ++ Q ++L  G D+L+ TPGR+LD + +  L  + +E+LV+DEADRM
Sbjct: 65  LSLTSLAMYGGVDYKDQKQRLIDGVDILVATPGRLLDMYTQRALHFDELEVLVLDEADRM 124

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
           LDMGFI  I  I   +P  RQ LLFSAT++D+++ +++  ++ P  I V+  S+T   I+
Sbjct: 125 LDMGFIEDINKILERLPKERQNLLFSATLSDQVRVLAKTAVERPVEISVSPDSATTPQID 184

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
              +       KK ALL  +++ ++  K  +IF   K     L   LEK+G +  AIHG 
Sbjct: 185 QWLITV--DKDKKSALLSHMIK-ENEWKQALIFIQTKHGAAKLVSQLEKRGIAAEAIHGG 241

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
             Q  R K+L++FK G + L+VA+ +AARG+DI D+  V N+D+P++A++Y+HRIGRTGR
Sbjct: 242 RSQAVREKLLNDFKSGELGLLVATGIAARGIDIDDLTRVINYDLPDQADDYVHRIGRTGR 301

Query: 339 AGRHGKAFTLVAKEDIKHIDAIE 361
           AG  G+A + V+++D +H+ AIE
Sbjct: 302 AGATGEAISFVSRDDFRHLCAIE 324


>gi|149909603|ref|ZP_01898256.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
 gi|149807307|gb|EDM67260.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
          Length = 446

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 148/371 (39%), Positives = 224/371 (60%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+    +P+++ A+    Y + TP+Q + IP   +  D+   AQTGTGKTA+F LP+L
Sbjct: 1   MKFSSYSFTPEILRALDACNYDQMTPVQQQAIPAAGRGKDILANAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +      +     R LIL PTRELAAQV DN + Y +   L V  + GG+  E Q K+
Sbjct: 61  QQIADTPKDIHSGSVRALILVPTRELAAQVTDNIKAYSQFMELNVVSVYGGVKMETQTKQ 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G DVL+ TPGR+L+H       + N+E LV+DEADRMLDMGFI  I+ I   +    
Sbjct: 121 LKQGVDVLVATPGRLLEHLQLNHTNLANVEHLVLDEADRMLDMGFITDIRKILESISNDF 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT++ +++ ++   L +P  +  +  +STA TI+H  V    +  +K  LL +L
Sbjct: 181 QTMLFSATLSQQMKHLANELLTSPVIVSASKENSTASTIKH--VIHPVEQRRKQELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +++  K  ++F N K+   N+   L+  G      HG+  Q +R + L+ FKEG I+ 
Sbjct: 239 IGTKN-WKQVLVFVNTKEAANNIVKELKLDGIKADVCHGDKGQGARRRALTEFKEGKIRA 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  + +V N+D+P  AE+YIHRIGRTGRAG  G A + V +E+   + 
Sbjct: 298 LVATDVAARGLDVQGLKYVVNYDLPFLAEDYIHRIGRTGRAGETGNAVSFVCREEEHGLA 357

Query: 359 AIEKLIEKKVD 369
            IE +I  K++
Sbjct: 358 DIEAMIGYKIE 368


>gi|229020923|ref|ZP_04177614.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1273]
 gi|229026894|ref|ZP_04183218.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1272]
 gi|228734397|gb|EEL85067.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1272]
 gi|228740374|gb|EEL90681.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1273]
          Length = 481

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 136/362 (37%), Positives = 224/362 (61%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FADYALSKEIVRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLACLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++K+S  ++ +P  IE+     T + IEH    T  +  +K +LL+ +   +
Sbjct: 183 FSATLPEDVEKLSRKYMDSPTHIEIKAAGITTDKIEHTLFETREE--EKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVFKQLDRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNKGKAITFITPYENRFLEEIEE 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|34557821|ref|NP_907636.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Wolinella
           succinogenes DSM 1740]
 gi|34483539|emb|CAE10536.1| ATP-DEPENDENT RNA HELICASE, DEAD-BOX FAMILY DEAD [Wolinella
           succinogenes]
          Length = 505

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 146/368 (39%), Positives = 221/368 (60%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G    ++  + +AG+  P+PIQ++ IPLVL  HD+   AQTGTGKTA+F LP++  
Sbjct: 16  FEQFGFKENLLRGIHEAGFKVPSPIQVEAIPLVLGGHDLIAQAQTGTGKTAAFGLPIIQN 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   +       LI+ PTRELA Q++D   K G+N       + GG     Q + LE+ 
Sbjct: 76  LKNDGS----IEALIITPTRELAVQISDEIFKLGRNCRTKTVSVYGGQAIRRQVELLEKA 131

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    +L   N   +V+DE+D MLDMGF+  I+ I + +P +RQTLL
Sbjct: 132 PQVIIATPGRLLDHLRNDRLKNFNPTTIVLDESDEMLDMGFLDDIEEIFTYLPASRQTLL 191

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   ++ +++  L NPK ++V T  +T   I   +     +Y ++ A++ +L+ S+
Sbjct: 192 FSATMPAPIKNLAQKILHNPKMVKVTTNETTNSDISQRYY-IINEYEREDAIV-RLIDSE 249

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  IIF   KK   +L + L  +G+   A+HG+++QR R   ++ FK+G I ++VA+
Sbjct: 250 APSKT-IIFTRMKKEADDLSNRLIAKGYQAGALHGDMEQRERQAAVNAFKQGAIDILVAT 308

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI +V HVFN+ +P   E+Y+HRIGRTGRAG+ G A TL    + K I  I +
Sbjct: 309 DVAARGLDISNVSHVFNYHIPLNPESYVHRIGRTGRAGKKGIAITLATPLEFKEIRRISE 368

Query: 363 LIEKKVDW 370
             +  ++ 
Sbjct: 369 TTKATIEL 376


>gi|325291138|ref|YP_004267319.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324966539|gb|ADY57318.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 518

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 144/368 (39%), Positives = 217/368 (58%), Gaps = 10/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+GLS  ++ A  D G+ + TPIQ KTIP+ +   D+ G AQTGTGKTA+F +PM+  
Sbjct: 4   FFDMGLSNFIIKATADMGFEEATPIQEKTIPVAMAGRDIIGQAQTGTGKTAAFAIPMIEN 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+    +     L++ PTRELA QVA+   K G+   +    + GG     Q + L   
Sbjct: 64  LERHAEGIG---GLVVTPTRELAVQVAEEINKIGQFKGIHAQPIYGGQDINRQIRALRNR 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++DH  R  + ++++ + V+DEAD ML MGFI  I++I   +    QTLL
Sbjct: 121 PQIIVGTPGRLMDHMRRHTIRLDHVSMAVLDEADEMLSMGFIEDIESILGEIQHKHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA--TYAQYSKKCALLQQLLQ 240
           FSATM   +  +S+ F+  P+ I +     T    E  +V      ++   C LL   +Q
Sbjct: 181 FSATMPQSILNLSKRFMLEPEFISIKAKEVTVPNTEQYYVELPERQKFDVLCRLLD--IQ 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S D     I+F   K+ V  L  +L K+G+S   IHG++ Q  R  +L +FKEG   ++V
Sbjct: 239 SPDL---AIVFGRTKRRVDELYEALNKRGYSAEGIHGDLTQLRRDSVLRHFKEGVTDILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V H++NFD+P   E+Y+HRIGRTGRAG+ G A T V   ++ H+  I
Sbjct: 296 ATDVAARGLDISGVTHIYNFDIPQDPESYVHRIGRTGRAGKTGLAVTFVTPRELNHLRLI 355

Query: 361 EKLIEKKV 368
           E++ ++++
Sbjct: 356 EQVTKRRI 363


>gi|168180793|ref|ZP_02615457.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|226950212|ref|YP_002805303.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           botulinum A2 str. Kyoto]
 gi|182668220|gb|EDT80199.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|226841562|gb|ACO84228.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 524

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 144/384 (37%), Positives = 236/384 (61%), Gaps = 7/384 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L L+  V+ A+   G+  P+ IQ K+IP+VL+  DV   AQTGTGKT +F  P+++
Sbjct: 5   NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   + + +  + L+L PTRELA Q+ D  ++  K     V  + GG   E Q K ++ 
Sbjct: 65  AL-CDKEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKS 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR+LDH NR  L +  I+ LV+DEAD ML+MGFI  I+ I       +QT+
Sbjct: 124 GVDIVVGTPGRVLDHINRRTLKLGGIDFLVLDEADEMLNMGFIEDIETIMESTSEEKQTM 183

Query: 182 LFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSATM + ++K++ N+++ + + I +   S T + I   + A   +   K   L +++ 
Sbjct: 184 LFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFA--VKNKDKLEALCRIID 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++  ++ IIFC  K+ V  L  +++ +G++V  +HG++ Q  R+  L  FK+ T+  +V
Sbjct: 242 SEEP-ESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HV N+D+P  AE+Y+HRIGRTGRA + G A++LV   ++  I  I
Sbjct: 301 ATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E++ + K+     +L +L   LEK
Sbjct: 361 ERITKSKIK--KKELPTLEDILEK 382


>gi|253568946|ref|ZP_04846356.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6]
 gi|251840965|gb|EES69046.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6]
          Length = 647

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 142/367 (38%), Positives = 228/367 (62%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP+L 
Sbjct: 4   FEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            ++    + R+P++LIL PTREL  Q+A +   Y K  + L V  + GG   ++Q + L+
Sbjct: 64  QID---VKNRVPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  + ++ +  +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTVHNIVMDEADEMLNMGFTDSINAILADVPKERNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+ ++S+N+LQN K I +   + +   ++H  VA   Q   K A L++++ 
Sbjct: 181 LLFSATMSPEIARISKNYLQNAKEITIGRKNESTSNVKH--VAYTVQAKDKYAALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+V
Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKLREI 357

Query: 361 EKLIEKK 367
           E++I KK
Sbjct: 358 ERIIGKK 364


>gi|223043911|ref|ZP_03613952.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Staphylococcus capitis SK14]
 gi|314934151|ref|ZP_07841512.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           caprae C87]
 gi|222442626|gb|EEE48730.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Staphylococcus capitis SK14]
 gi|313653056|gb|EFS16817.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           caprae C87]
          Length = 511

 Score =  273 bits (697), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 150/393 (38%), Positives = 227/393 (57%), Gaps = 33/393 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S + V  +   G+ +PTPIQ  +IP  L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDRTVQTLESMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  G+  V+   +LIL PTRELA QVA+   ++ K  N+ V  + GG+P E Q K L+R
Sbjct: 63  KV-VGQQGVQ---SLILAPTRELAMQVAEQLREFSKGQNVQVVTVFGGMPIERQIKALKR 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQT 180
           G  +++ TPGR++DH NR  L  N I  L++DEAD M++MGFI  ++ I   +P   RQT
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPSDQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +Q + + F++ PK I+      +   I+  +             + + L+
Sbjct: 179 MLFSATMPKAIQDLVQQFMKTPKIIKTMNNEMSDPQIDEYYT------------IVKELE 226

Query: 241 SQDTMKN---------GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             DT  N          I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  F
Sbjct: 227 KFDTFTNFLDVHQPDLAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKF 286

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K   I ++VA+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V  
Sbjct: 287 KNDQIDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNP 346

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
            ++ +I  IE +  ++       +++L PP  K
Sbjct: 347 IEMDYIRQIEDVNGRR-------MNALRPPHRK 372


>gi|7573310|emb|CAB87628.1| DRH1 DEAD box protein-like [Arabidopsis thaliana]
          Length = 713

 Score =  273 bits (697), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 143/357 (40%), Positives = 219/357 (61%), Gaps = 14/357 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-PR 74
           V  AG+  P+PIQ ++ P+ +Q  D+  IA+TG+GKT  +++P    L++     RM P 
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPT 303

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTRELA Q+     K+GK+  ++ A L GG P   Q K++ERG D+++ TPGR+ 
Sbjct: 304 ILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLN 363

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D     ++ ++ +  LV+DEADRMLDMGF P I+ I + VP  RQTL+++AT   E++K+
Sbjct: 364 DILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKI 423

Query: 195 SENFLQNPKRI------EVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
           + + L NP ++      E+    S  +TIE   +A   ++S+    L+Q+L+SQ+     
Sbjct: 424 AADLLVNPAQVNIGNVDELVANKSITQTIE--VLAPMEKHSR----LEQILRSQEPGSKI 477

Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           IIFC+ K+    L  +L +  F   AIHG+  Q  R  +L+ F+ G   ++VA+D+AARG
Sbjct: 478 IIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARG 536

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           LD+ D+  V N+D PN  E+Y+HRIGRTGRAG  G A+T    +D KH   + K++E
Sbjct: 537 LDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILE 593


>gi|282878371|ref|ZP_06287163.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
           35310]
 gi|281299557|gb|EFA91934.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
           35310]
          Length = 558

 Score =  273 bits (697), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 147/375 (39%), Positives = 232/375 (61%), Gaps = 12/375 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  +   TP+Q K IP +L+  DV G+AQTGTGKTA+++LP++
Sbjct: 1   MKFEELELNNNVLDALYDMRFDTCTPVQEKCIPEILKGRDVLGVAQTGTGKTAAYLLPIM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL----TVALLIG--GIPFEA 114
           + ++ G         LI+ PTRELA Q+    + +G  Y L    +VA+  G  G  ++ 
Sbjct: 61  SKIDSGNYPEDAINCLIMSPTRELAQQIDQAMQGFG--YYLQGVSSVAVYGGNDGNRYDQ 118

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           + K L  GADV+I TPGR + H + G + ++ +   V+DEADRMLDMGF   I  I   +
Sbjct: 119 ELKSLRMGADVVIATPGRFISHMSLGNVDLSKVSFFVLDEADRMLDMGFSEDIMTIAKGL 178

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P T QT++FSATM D++ +++   L+NP  +++   S  AE I+    A     ++K  +
Sbjct: 179 PKTCQTIMFSATMPDKINELARTLLKNPVEVKLAV-SKPAEKIKQ--TAYVCHETQKLGI 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           ++++ +  D +K  IIFC  K+ V  +  +L++   +   +H ++DQ  R +++  FK G
Sbjct: 236 IKKIFKQGD-LKRVIIFCGAKQKVKQVSQALQRMKINCGEMHSDLDQAQRDEVMFQFKSG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I ++VA+D+ +RG+DI D+  V N+DVP+ AE+Y+HRIGRT RA R G A TLV+K+DI
Sbjct: 295 QIDVLVATDILSRGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGAAITLVSKDDI 354

Query: 355 KHIDAIEKLIEKKVD 369
            +   IEK +EK+V+
Sbjct: 355 YYFQQIEKFLEKEVE 369


>gi|118639520|gb|ABL09512.1| ATP-dependent RNA helicase [Halobacillus halophilus DSM 2266]
          Length = 395

 Score =  273 bits (697), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 152/409 (37%), Positives = 241/409 (58%), Gaps = 18/409 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+    +  +   G   PTPIQ + IP ++   DV   AQTGTGKT +F+LP+L  
Sbjct: 5   FEQLGVRKDFIDKLTQEGIGAPTPIQQEAIPALMDGRDVIAQAQTGTGKTFAFLLPILQN 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +    A V+    +I+ PTRELA Q+ +   K  K  ++ V  + GG     Q  KL+  
Sbjct: 65  IRVDEASVQ---AVIVTPTRELALQITEEVRKL-KTEDMHVLAVYGGQDVAKQAHKLDGQ 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A ++I TPGR+LDH  RG + +  ++ +V+DEAD+ML+ GF+P +++I S  P  +QT+L
Sbjct: 121 AHIVIATPGRMLDHLRRGTISLEAVKYMVLDEADQMLEAGFLPDVKDILSQTPEAKQTML 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+T ++ ++ +  L++P+RI V   + T E I+     T    +K+  L++ + + +
Sbjct: 181 FSATITTQVNQLGKKILKDPRRITVQEKTVTLEGIKQLVYET-TDRAKQDTLIEIMQEHR 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   +IFC  K+    L  +L   GF    +HG++ Q  R K++  F++  IQ +VA+
Sbjct: 240 PFL--ALIFCRTKRRARKLNDALLSHGFEADELHGDLSQAKREKVMKRFRDAKIQYLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T  A +D + + +IEK
Sbjct: 298 DVAARGLDVEGVTHVFNYDIPQDPESYIHRIGRTGRAGGKGLAITFAAPKDRQALQSIEK 357

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            I++K++  +  L++L+P  EK          K+ P P+K T   +R++
Sbjct: 358 SIKQKIERRS--LANLSPGKEK--------ESKSEP-PKKKTKRSQRRR 395


>gi|309750350|gb|ADO80334.1| ATP-dependent RNA helicase DeaD [Haemophilus influenzae R2866]
          Length = 613

 Score =  273 bits (697), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 229/369 (62%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L  
Sbjct: 7   FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLLAQ 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121
           ++      + P+ L++ PTRELA QVAD  E + K    T +  L GG  ++ Q + L++
Sbjct: 67  IDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   QT 
Sbjct: 124 GAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240
           LFSATM + ++++++ F+ +P+ +++   +  A  I+  C+   Y    +K   L + L+
Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++V
Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 361 EKLIEKKVD 369
           E L++K ++
Sbjct: 360 EHLMKKGIN 368


>gi|315452663|ref|YP_004072933.1| ATP-dependent RNA helicase [Helicobacter felis ATCC 49179]
 gi|315131715|emb|CBY82343.1| ATP-dependent RNA helicase,DEAD box helicase family protein
           [Helicobacter felis ATCC 49179]
          Length = 469

 Score =  273 bits (697), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 146/368 (39%), Positives = 224/368 (60%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL P+++ ++ +AG+V+P+PIQ K IP++LQ  DV   AQTGTGKTA+F LP++  
Sbjct: 20  FKDLGLHPRILKSIAEAGFVQPSPIQEKAIPVILQGRDVIAQAQTGTGKTAAFALPIIHN 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  R+       LI+ PTRELA Q++D   + GK+       + GG     Q + LE+ 
Sbjct: 80  LKNDRS----VEALIITPTRELAMQISDEIFRLGKSSRTRTICIYGGQSIRKQCELLEKR 135

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    +L   N +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 136 PQVMIATPGRLLDHLKNKRLKHFNPKVVVLDESDEMLDMGFLDDIEEIFDYLPNDAQILL 195

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   ++ ++   LQ+P  I +   + T   I   F     ++ +  A+++ LL  +
Sbjct: 196 FSATMPPPIRDLANKILQDPASIHIAPANITNADISQRFYVI-NEHERNEAIMR-LLDKE 253

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  K+ IIF   K+ V  L   L ++G+    +HG+++QR+R + +  FK     ++VA+
Sbjct: 254 NHTKS-IIFMRMKREVDELHRFLVERGYKTTPLHGDMEQRARQESIKAFKSKRADVLVAT 312

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI DV HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 313 DVASRGLDISDVSHVFNYHLPLNTESYIHRIGRTGRAGKKGIAITLVTPLEYKELQRMQK 372

Query: 363 LIEKKVDW 370
            I+  ++ 
Sbjct: 373 EIDSTIEL 380


>gi|329923450|ref|ZP_08278932.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
 gi|328941342|gb|EGG37636.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
          Length = 538

 Score =  273 bits (697), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 154/420 (36%), Positives = 243/420 (57%), Gaps = 22/420 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LG+  + V  + + G  +PTP+Q ++IPL+LQ  DV   A+TGTGKT +F+LP+L 
Sbjct: 13  NFQQLGIDEQRVRKLKEQGITEPTPVQQESIPLLLQGKDVIARAKTGTGKTLAFMLPILQ 72

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY--GKNYNLTVALLIGGIPFEAQNKKL 119
            ++  RA    P+ LI+ PTRELA Q+ +  +K   G+   + +  + GG   E Q +KL
Sbjct: 73  HIDPKRA---YPQALIIAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVEKQLRKL 129

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G  ++I TPGR+LDH  RG L +  ++ LV+DEAD+ML MGF+  ++ +   +P+ RQ
Sbjct: 130 EGGRQLIIGTPGRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDEVEALIHALPYRRQ 189

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQL 238
           T+LFSATM   +++++ N++  P  I +   S    E I+   V      SK+ AL   +
Sbjct: 190 TMLFSATMPAGVKQLAGNYMNQPVDIVIKGASPIPLEQIQQVVVEC-TDRSKQDALRAMI 248

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +    +   IIFC  K+    L  +L   G+    +HG++ Q  R  ++  F+E  +QL
Sbjct: 249 EEHNPFL--AIIFCRTKRRATTLNEALLAHGYQSDELHGDLSQAKREAVMKRFREAKLQL 306

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  V HVFN+D+P+  E+YIHRIGRTGRAG  G A T  A +D+  + 
Sbjct: 307 LVATDVAARGLDVEGVTHVFNYDMPHDVESYIHRIGRTGRAGGSGMAITFAAGKDLNDLQ 366

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IE+ I +++  +  D ++                R+++    + TG  R+ +N SS +S
Sbjct: 367 RIEEGISQRLKRVRYDSAA-------------GSLRESSGSSGRDTGRPRKARNVSSLES 413


>gi|16272194|ref|NP_438403.1| ATP-dependent RNA helicase [Haemophilus influenzae Rd KW20]
 gi|260580884|ref|ZP_05848709.1| ATP-dependent RNA helicase [Haemophilus influenzae RdAW]
 gi|1169261|sp|P44586|DEAD_HAEIN RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|1573195|gb|AAC21900.1| ATP-dependent RNA helicase (deaD) [Haemophilus influenzae Rd KW20]
 gi|260092507|gb|EEW76445.1| ATP-dependent RNA helicase [Haemophilus influenzae RdAW]
          Length = 613

 Score =  273 bits (697), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 229/369 (62%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L  
Sbjct: 7   FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQ 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121
           ++      + P+ L++ PTRELA QVAD  E + K    T +  L GG  ++ Q + L++
Sbjct: 67  IDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   QT 
Sbjct: 124 GAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240
           LFSATM + ++++++ F+ +P+ +++   +  A  I+  C+   Y    +K   L + L+
Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++V
Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 361 EKLIEKKVD 369
           E L++K ++
Sbjct: 360 EHLMKKGIN 368


>gi|37677117|ref|NP_937513.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|37201662|dbj|BAC97483.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 402

 Score =  273 bits (697), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 147/362 (40%), Positives = 217/362 (59%), Gaps = 4/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   +  A+   GY KPT IQ + IP++L+  D+   AQTGTGKTASFVLPML
Sbjct: 5   MSFTQLGLCASLTDALDTLGYPKPTRIQTQAIPVILEGQDLIAAAQTGTGKTASFVLPML 64

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G+  + +  R LIL PTRELA QV +  ++YG+N  L    + GG+  + Q + L
Sbjct: 65  EKLRHGQTQKKKRIRALILVPTRELAIQVDEKIKQYGQNLALRSLAMFGGVDEKTQKQAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +    IE+LV+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 125 IEGLDILVATPGRLLDMYGQRAVYFEEIEMLVLDEADRMLDMGFIDDINKILDRLPENIQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++++++ ++++ + NP  I +    ++   IE   +       +K ALL  L+
Sbjct: 185 HLLFSATLSNKVRDLAKSAIHNPFEISIAAKQASKSNIEQWIITV--DKDQKSALLSHLI 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++     +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 243 K-ENQWDQTLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLEDFKAGKIKYL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A +LV+K++ K++  
Sbjct: 302 VSTGVAARGIDIEALPRVVNYDLPFPADEYVHRIGRTGRANAKGEAISLVSKDNFKNLCM 361

Query: 360 IE 361
           IE
Sbjct: 362 IE 363


>gi|79513425|ref|NP_196965.2| ATP binding / ATP-dependent helicase/ helicase/ nucleic acid
           binding / protein binding [Arabidopsis thaliana]
 gi|332004671|gb|AED92054.1| DEAD-box ATP-dependent RNA helicase 46 [Arabidopsis thaliana]
          Length = 712

 Score =  273 bits (697), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 143/357 (40%), Positives = 219/357 (61%), Gaps = 14/357 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-PR 74
           V  AG+  P+PIQ ++ P+ +Q  D+  IA+TG+GKT  +++P    L++     RM P 
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPT 303

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTRELA Q+     K+GK+  ++ A L GG P   Q K++ERG D+++ TPGR+ 
Sbjct: 304 ILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLN 363

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D     ++ ++ +  LV+DEADRMLDMGF P I+ I + VP  RQTL+++AT   E++K+
Sbjct: 364 DILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKI 423

Query: 195 SENFLQNPKRI------EVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
           + + L NP ++      E+    S  +TIE   +A   ++S+    L+Q+L+SQ+     
Sbjct: 424 AADLLVNPAQVNIGNVDELVANKSITQTIE--VLAPMEKHSR----LEQILRSQEPGSKI 477

Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           IIFC+ K+    L  +L +  F   AIHG+  Q  R  +L+ F+ G   ++VA+D+AARG
Sbjct: 478 IIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARG 536

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           LD+ D+  V N+D PN  E+Y+HRIGRTGRAG  G A+T    +D KH   + K++E
Sbjct: 537 LDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILE 593


>gi|300865385|ref|ZP_07110194.1| DEAD/DEAH box helicase-like [Oscillatoria sp. PCC 6506]
 gi|300336620|emb|CBN55344.1| DEAD/DEAH box helicase-like [Oscillatoria sp. PCC 6506]
          Length = 480

 Score =  272 bits (696), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 147/378 (38%), Positives = 221/378 (58%), Gaps = 17/378 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LG+S + +  +   G+ +PTPIQ + IP +L   DV G AQTGTGKTA+F LP+L
Sbjct: 3   LTFESLGISEERIRHLETLGFSEPTPIQTQAIPHLLAGRDVVGQAQTGTGKTAAFSLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFE----------KYGKNYNLTVALLIGGI 110
             ++ G   V+    LIL PTRELA QV +             K G++  L V  + GG 
Sbjct: 63  ERIDLGVTAVQ---ALILTPTRELALQVTEAIRELSGLSEGPVKLGRS--LQVLTVYGGQ 117

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q ++L RG  +++ TPGRI+D  NRG L ++ ++ +V+DEAD ML MGFI  ++ I
Sbjct: 118 SIDRQMQRLRRGVHIVVGTPGRIIDMLNRGSLKLDQLKWMVLDEADEMLSMGFIQDVEKI 177

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
               P   QT  FSATM   ++K+    L++P  + V  P +T + I  C       +SK
Sbjct: 178 LEAAPADHQTAFFSATMEASIRKLVSKHLRSPINVTVEQPKATPKRIRQCVYMVPRGWSK 237

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             AL Q +L+ +D  ++ +IF   +     L   L+  G SV   HGN++Q  R ++LS 
Sbjct: 238 SRAL-QPILEMEDP-ESALIFVRTRAAAAELTSQLQAAGHSVDEYHGNLNQAQRERLLSR 295

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F +  ++ +VA+D+AARGLD+ D+ HV N+D+P+  E+Y+HRIGRTGRAGR G A TL+ 
Sbjct: 296 FHQSQVRWVVATDIAARGLDVNDLTHVINYDLPDSVESYVHRIGRTGRAGREGTAITLIQ 355

Query: 351 KEDIKHIDAIEKLIEKKV 368
             D + +  IE+ + + +
Sbjct: 356 AVDRRKLRLIERHVRQTL 373


>gi|148827371|ref|YP_001292124.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG]
 gi|148718613|gb|ABQ99740.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG]
          Length = 613

 Score =  272 bits (696), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 229/369 (62%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L  
Sbjct: 7   FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQ 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121
           ++      + P+ L++ PTRELA QVAD  E + K    T +  L GG  ++ Q + L++
Sbjct: 67  IDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   QT 
Sbjct: 124 GAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240
           LFSATM + ++++++ F+ +P+ +++   +  A  I+  C+   Y    +K   L + L+
Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++V
Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 361 EKLIEKKVD 369
           E L++K ++
Sbjct: 360 EHLMKKGIN 368


>gi|330840963|ref|XP_003292476.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
 gi|325077283|gb|EGC31006.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
          Length = 780

 Score =  272 bits (696), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 147/360 (40%), Positives = 212/360 (58%), Gaps = 2/360 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  ++ AV   G+ +PTPIQ KTIPL L   D+   A TG+GKTA+F+LP+L  
Sbjct: 184 FEELHLSRPLLKAVQKLGFSQPTPIQAKTIPLALNGKDILASASTGSGKTAAFLLPILER 243

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L    +  R  R L+L PTRELA Q     E   +  N+T  L++GG+  +AQ  +L + 
Sbjct: 244 LLFRDSEYRAIRVLVLLPTRELALQCQSVLENLAQFSNITSCLIVGGLSNKAQEVELRKR 303

Query: 123 ADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR++DH  N   + + ++EIL++DEADR+LDMGF   I  I    P +RQT+
Sbjct: 304 PDVVIATPGRLIDHLLNAHGIGLEDLEILILDEADRLLDMGFKDEINKIVDSCPTSRQTM 363

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY-SKKCALLQQLLQ 240
           LFSAT+ DE++ +++  LQ P R++V+     A T++  FV   +Q+ S + A+L  L  
Sbjct: 364 LFSATLNDEVKTLAKLSLQQPIRVQVDALFQVASTLDQEFVKIKSQHLSDRPAILMSLCT 423

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIFC  KK V  LC            +HGN+ Q  R   L  F++G +  ++
Sbjct: 424 RVFNTGGTIIFCRSKKEVHRLCIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGKVNYLL 483

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+A+RGLDI  V  V N+++PN    YIHR+GRT RAG  GK+ + + + D K +  I
Sbjct: 484 ASDVASRGLDIIGVKTVINYNMPNTLAQYIHRVGRTARAGMEGKSCSFITENDRKILKEI 543


>gi|145628549|ref|ZP_01784349.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
 gi|145639856|ref|ZP_01795457.1| preprotein translocase subunit SecF [Haemophilus influenzae PittII]
 gi|144979019|gb|EDJ88705.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
 gi|145271074|gb|EDK10990.1| preprotein translocase subunit SecF [Haemophilus influenzae PittII]
          Length = 613

 Score =  272 bits (696), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 229/369 (62%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L  
Sbjct: 7   FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLLAQ 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121
           ++      + P+ L++ PTRELA QVAD  E + K    T +  L GG  ++ Q + L++
Sbjct: 67  IDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   QT 
Sbjct: 124 GAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240
           LFSATM + ++++++ F+ +P+ +++   +  A  I+  C+   Y    +K   L + L+
Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++V
Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 361 EKLIEKKVD 369
           E L++K ++
Sbjct: 360 EHLMKKGIN 368


>gi|302875685|ref|YP_003844318.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307689114|ref|ZP_07631560.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302578542|gb|ADL52554.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
           743B]
          Length = 472

 Score =  272 bits (696), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 149/395 (37%), Positives = 226/395 (57%), Gaps = 15/395 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  L+  ++ ++    +  PT +Q K IPL L   D+   AQTG+GKTA+F +P  
Sbjct: 2   INFKDFNLNESMLKSLKLMNFDVPTEVQEKVIPLALSGDDIIVKAQTGSGKTAAFAIP-- 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I+E   A     + L+L PTRELA QV + F   G    +    + G  P   Q  +L 
Sbjct: 60  -IIENLIANENAVQALVLTPTRELAVQVQETFSTLGVYKKIKTVAVYGKQPMSIQKNQLS 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR LDH  +G L +++++ L+IDEAD ML+MGFI  ++NI   VP  RQT
Sbjct: 119 QRVHIVVGTPGRTLDHIEKGNLDISSVKYLIIDEADEMLNMGFIDEVENIIKKVPKLRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT++ E++++   ++ +PK IE+   + T   I   +       + K  LL+ L++
Sbjct: 179 LMFSATLSYEIKELINKYMFSPKLIELTPETLTVAKINQKYYEI--DENLKYNLLEDLIK 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++D  K  I+FC  KKNV  L   +    +SV  IHG++ Q  R+  L  FKE   Q +V
Sbjct: 237 TEDITK-AILFCRTKKNVAYLASRMRVSSYSVTEIHGDMLQNDRLSALKAFKEDKFQFIV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ +V HVFN+D+P   E Y+HRIGRTGRAG  G+A T V + + K + AI
Sbjct: 296 ATDVAARGIDVNNVSHVFNYDIPLELEAYVHRIGRTGRAGSSGEAITFVTRYEDKFLKAI 355

Query: 361 EKLIEKKV---------DWLNGDLSSLNPPLEKID 386
           E+ I  K+         + LN       P + KI+
Sbjct: 356 EEFINMKIPQGIHPSKEEVLNAPKKEFKPSVAKIN 390


>gi|117922031|ref|YP_871223.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117614363|gb|ABK49817.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 619

 Score =  272 bits (696), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 143/367 (38%), Positives = 223/367 (60%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ A+ + GY  PTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L  
Sbjct: 8   FRELGLSENLLRALDELGYENPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +        +P+ L+L PTRELA QVA+ F  Y K      V  + GG     Q   L+R
Sbjct: 68  VTSQA----VPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNALKR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L +  ++ LV+DEAD ML MGFI  I+ I    P  RQ  
Sbjct: 124 GPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQRQLA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +++++V+   L++   I +    +T ++IE  FV   +Q++K  AL++ +L+ 
Sbjct: 184 LFSATMPEQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQV-SQHNKLEALVR-VLEV 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++T +  IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++A
Sbjct: 242 ENT-EGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDILIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +GHV N+D+P   E Y+HRIGRTGRAGR G A   V   +++ +  IE
Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360

Query: 362 KLIEKKV 368
           +    ++
Sbjct: 361 RATNSRI 367


>gi|296158936|ref|ZP_06841764.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295890811|gb|EFG70601.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 539

 Score =  272 bits (696), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 149/388 (38%), Positives = 228/388 (58%), Gaps = 32/388 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA LGLS  VV A+  AGY  PTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 53  FASLGLSADVVSALTAAGYQNPTPVQQRAIPAGIAGRDLMVSSPTGSGKTAAFMLPAIER 112

Query: 61  -TILEKGRA------------RVRMPR------TLILEPTRELAAQVADNFEKYGKNYN- 100
            + L+K +A            R R P+       L+L PTRELA QV      YGK+   
Sbjct: 113 FSQLQKAQAGQPREPRPADGARTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKR 172

Query: 101 LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160
           L    ++GG+ +  Q   L +  ++L+ TPGR++DH  RG++ ++ ++ILV+DEADRMLD
Sbjct: 173 LRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLD 232

Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV----NTPSSTAET 216
           MGFI  I+ I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+       ++ A+T
Sbjct: 233 MGFIEDIETIVAATPATRQTMLFSATLDGKITSLTGRLLKDPERIEIVQRLEQRTNIAQT 292

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
           + +           K  LL  LL+ +  +   I+F   K +   L   L   GF   A+H
Sbjct: 293 VHYV-----DDRDHKDRLLDHLLRDEG-LDQAIVFTATKMDADQLAGRLADAGFESAALH 346

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRT
Sbjct: 347 GDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRT 406

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           GRAGR G A +LV   +   +  IE+ +
Sbjct: 407 GRAGRSGIAVSLVHHAEQGALKRIERFV 434


>gi|163755350|ref|ZP_02162470.1| putative RNA helicase dead-box protein [Kordia algicida OT-1]
 gi|161324770|gb|EDP96099.1| putative RNA helicase dead-box protein [Kordia algicida OT-1]
          Length = 591

 Score =  272 bits (696), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 224/368 (60%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LGL   ++ A+ D G+  P+ +Q K IP++L +  D+  +AQTGTGKTA+F  P++ 
Sbjct: 4   FEELGLQDSLLRAIQDMGFETPSEVQEKAIPILLNEETDIVALAQTGTGKTAAFGFPLI- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             +K  A  R  + LIL PTREL  Q+ +  + Y K  N+ V  + GG     Q +++++
Sbjct: 63  --QKINADSRTTQGLILSPTRELCLQITNELKNYSKYENINVVAIYGGASITDQARQVKK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ D  NR  + ++ IE  V+DEAD ML+MGF   I +I S  P  + T 
Sbjct: 121 GAQIVVATPGRMQDMINRRMVDISKIEYCVLDEADEMLNMGFYEDITSILSHTPDDKSTW 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+  +++ F+  P+ I V + +S ++++ H F   YA   +   L  + L  
Sbjct: 181 LFSATMPREVATIAKKFMHTPQEITVGSRNSGSDSVRHEF---YAVSGRDRYLALKRLAD 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     ++FC  K++  N+   L + G++  AIHG++ Q  R  ++ +F+   IQ++VA
Sbjct: 238 ANPDIFSVVFCRTKRDTQNVAEKLIEDGYNAAAIHGDLSQNQRDLVMKSFRTRQIQMLVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ D+ HV N+ +P+  E Y HR GRTGRAG++G +  +V K +++ I +IE
Sbjct: 298 TDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKNGVSMVIVTKSEMRKIKSIE 357

Query: 362 KLIEKKVD 369
           + I+KK +
Sbjct: 358 RKIQKKFE 365


>gi|229170156|ref|ZP_04297843.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH621]
 gi|228613301|gb|EEK70439.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH621]
          Length = 481

 Score =  272 bits (696), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 135/362 (37%), Positives = 225/362 (62%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FTDYALSKEIVRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLACLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++K+S  ++ +P  IE+     T + IEH    T  +  +K +LL+ +  ++
Sbjct: 183 FSATLPEDVEKLSRKYMDSPTHIEIKAAGITTDKIEHTLFETREE--EKLSLLKDVTTTE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVFKQLDRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG +GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIEE 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|289550302|ref|YP_003471206.1| Cold-shock DEAD-box protein A [Staphylococcus lugdunensis HKU09-01]
 gi|315660238|ref|ZP_07913093.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           lugdunensis M23590]
 gi|289179834|gb|ADC87079.1| Cold-shock DEAD-box protein A [Staphylococcus lugdunensis HKU09-01]
 gi|315494665|gb|EFU83005.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           lugdunensis M23590]
          Length = 504

 Score =  272 bits (696), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 146/394 (37%), Positives = 228/394 (57%), Gaps = 35/394 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DLG+S K V  + + G+ +PTPIQ  +IP  L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKDLGISEKTVQTLENMGFKEPTPIQKDSIPYALEGRDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ++ K   +     +LIL PTRELA QVA+   ++ +  N+ V  + GG+P + Q K L+
Sbjct: 63  KVVNKSGVQ-----SLILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPIDRQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQ 179
           +G  +++ TPGR++DH NR  L  N I  L++DEAD M++MGFI  ++ I   +P   RQ
Sbjct: 118 KGPQIVVGTPGRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   +Q + + F++ P+ ++      +   I+  +             + + L
Sbjct: 178 TMLFSATMPKAIQALVQQFMKTPQIVKTMNNEMSDPQIDEYYT------------IVKEL 225

Query: 240 QSQDTMKN---------GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  DT  N          I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  
Sbjct: 226 EKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKK 285

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK   I ++VA+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V 
Sbjct: 286 FKNDQIDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVN 345

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
             ++ +I  IE++  ++       +++L PP  K
Sbjct: 346 PIEMDYIRQIEEVNSRR-------MTALRPPHRK 372


>gi|293189188|ref|ZP_06607912.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
 gi|292821860|gb|EFF80795.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
          Length = 502

 Score =  272 bits (696), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 141/370 (38%), Positives = 217/370 (58%), Gaps = 9/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD G++  +V A+ D G   P PIQ  T+   L+RHD+ G A+TGTGKT  F +P+L  
Sbjct: 65  FADFGVTDPIVDALEDKGITHPFPIQALTLGPALERHDIIGQAKTGTGKTLGFGIPVLED 124

Query: 63  L----EKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    E+G   +     P+ LI+ PTREL  QVA +  +  K  +  +  + GG+ FE Q
Sbjct: 125 VIAPDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLREAAKYLSTRIVEIYGGVAFEPQ 184

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + LERGAD+++ TPGR++D   +G L ++ +E +V+DEAD MLD+GF+P ++ + S VP
Sbjct: 185 IEALERGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVETLLSRVP 244

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234
             R T+LFSATM   +  ++  F+  P  I    P    +T+       Y  ++  K  +
Sbjct: 245 ENRHTMLFSATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNTVKQVIYRVHAMNKVEV 304

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + ++LQ++   +  +IFC  K+    L   L  +GF+V ++HG++ Q +R + L  F+ G
Sbjct: 305 VARILQAEGRGRT-VIFCRTKRTAARLGEDLTARGFAVGSLHGDLGQGAREQALRAFRNG 363

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+  P   + YIHRIGRTGRAG  G A T V  +D 
Sbjct: 364 KVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGNSGTAVTFVDWDDT 423

Query: 355 KHIDAIEKLI 364
                I K +
Sbjct: 424 PRWSLISKAL 433


>gi|168183134|ref|ZP_02617798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|182673701|gb|EDT85662.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
          Length = 524

 Score =  272 bits (696), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 143/384 (37%), Positives = 236/384 (61%), Gaps = 7/384 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L L+  V+ A+   G+  P+ IQ K+IP+VL+  DV   AQTGTGKT +F  P+++
Sbjct: 5   NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   + + +  + L+L PTRELA Q+ D  ++  K     V  + GG   E Q K ++ 
Sbjct: 65  AL-CDKEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKS 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR+LDH NR  L +  I+ L++DEAD ML+MGFI  I+ I       +QT+
Sbjct: 124 GVDIVVGTPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183

Query: 182 LFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSATM + ++K++ N+++ + + I +   S T + I   + A   +   K   L +++ 
Sbjct: 184 LFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAV--KNKDKLEALCRIID 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++  ++ IIFC  K+ V  L  +++ +G++V  +HG++ Q  R+  L  FK+ T+  +V
Sbjct: 242 SEEP-ESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HV N+D+P  AE+Y+HRIGRTGRA + G A++LV   ++  I  I
Sbjct: 301 ATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E++ + K+     +L +L   LEK
Sbjct: 361 ERITKSKIK--KKELPTLEDILEK 382


>gi|240013980|ref|ZP_04720893.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI18]
 gi|240121547|ref|ZP_04734509.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID24-1]
          Length = 462

 Score =  272 bits (696), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 147/369 (39%), Positives = 218/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQR 64

Query: 63  LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLAPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGTSFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR+ D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    ++ + IEV       +  E        ++  +  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNR--LLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L++ ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDIPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 361 IEKYINRKL 369


>gi|156973083|ref|YP_001443990.1| ATP-dependent RNA helicase DbpA [Vibrio harveyi ATCC BAA-1116]
 gi|156524677|gb|ABU69763.1| hypothetical protein VIBHAR_00762 [Vibrio harveyi ATCC BAA-1116]
          Length = 459

 Score =  272 bits (696), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 146/367 (39%), Positives = 224/367 (61%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+P ++  +    Y   TPIQ  ++P +L + DV G  +TG+GKTA+F L +L+ 
Sbjct: 6   FDQVGLNPALLETLESLNYTHMTPIQALSLPAILNQRDVIGQGKTGSGKTAAFGLGVLSN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA      G+  +N+ V  L GG+P   Q   LE 
Sbjct: 66  LNVKRFRVQ---SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH  +G++ +  +  LV+DEADRML+MGF   +  I    P  RQTL
Sbjct: 123 GAHILVGTPGRILDHLEKGRINLEELNTLVLDEADRMLEMGFQDALDAIIDAAPKQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  ++++++++  +Q+P+ I+V +   T+ +I   F       ++  AL   LL  
Sbjct: 183 LFSATFPEKIEQIAQRIMQSPEMIKVESTHDTS-SIAQYFYNVEGSEARDEALANLLLTH 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ ++FCN KK V N+   L  +GFSV  +HG+++QR R + L  F   ++ ++VA
Sbjct: 242 QP--ESAVVFCNTKKEVQNVADELHHKGFSVVDLHGDLEQRERDQALVQFANKSVSILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+   ++D   +  IE
Sbjct: 300 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIE 359

Query: 362 KLIEKKV 368
           + +E  V
Sbjct: 360 EYLEMDV 366


>gi|240128393|ref|ZP_04741054.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268686791|ref|ZP_06153653.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|268627075|gb|EEZ59475.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 462

 Score =  272 bits (696), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 146/369 (39%), Positives = 218/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQR 64

Query: 63  LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLAPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGTSFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR+ D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    ++ + IEV       +  E        ++  +  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNR--LLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L++ ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 361 IEKYINRKL 369


>gi|242399022|ref|YP_002994446.1| ATP-dependent RNA helicase, DEAD-family [Thermococcus sibiricus MM
           739]
 gi|242265415|gb|ACS90097.1| ATP-dependent RNA helicase, DEAD-family [Thermococcus sibiricus MM
           739]
          Length = 382

 Score =  272 bits (695), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 140/369 (37%), Positives = 225/369 (60%), Gaps = 8/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59
           M F  LGLS   + AV   G+ KPT IQ + IP +L+  +D+ G +QTGTGKTA+F LP+
Sbjct: 1   MSFEKLGLSENSLNAVRRKGFEKPTDIQKEVIPRLLRGDNDIIGQSQTGTGKTAAFALPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + ++++    ++  + +++ PTRELA QVAD          + V  + GG P   Q + L
Sbjct: 61  IELIDE---EIKEVQAIVITPTRELAIQVADEIRSLRGKRRINVLPVYGGQPIGPQIRNL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG  +++ TPGR++DH  RG L ++ +   ++DEADRMLDMGFI  I+ I       ++
Sbjct: 118 RRGVHIVVGTPGRVIDHIERGTLSLDGVSYFILDEADRMLDMGFIEDIERILRHTSEEKR 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+  E+ +++  +L++ + I +   S   E +E  +     + +K+ +LL  +L
Sbjct: 178 VLMFSATIPREILRLARRYLKDYEVIRIQDRSLAPELVEQIYFEV--RPNKRFSLLCSIL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +D    GI+FC  K+    L   L+ +G+SV A++G+I Q+ R +IL  F++G I+++
Sbjct: 236 DEKDFY--GIVFCQTKRETRELASKLKTKGYSVEALNGDIPQKGRERILERFRKGKIRVL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ D+ HV N+ +P   E Y+HRIGRTGR G+ GKA T VA  +   +  
Sbjct: 294 VATDVAARGIDVKDLTHVINYSIPQNPEAYVHRIGRTGREGKRGKAITFVAPWESPKLRD 353

Query: 360 IEKLIEKKV 368
           IE++   K+
Sbjct: 354 IERVARVKI 362


>gi|254774280|ref|ZP_05215796.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 542

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 139/349 (39%), Positives = 211/349 (60%), Gaps = 7/349 (2%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
           A+ D GY  PT IQ  TIP ++   DV G+AQTGTGKTA+F +P+L+ ++      +   
Sbjct: 3   AIADVGYETPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSNIDVASTATQ--- 59

Query: 75  TLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
            L+L PTRELA QVA+ F +YG +   + V  + GG  +  Q   L+RGA V++ TPGR+
Sbjct: 60  ALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYAVQLAGLKRGAHVVVGTPGRV 119

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193
           +DH  RG L +++++ LV+DEAD ML MGF   +  I S  P  +Q  LFSATM   ++K
Sbjct: 120 IDHLERGTLNLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVALFSATMPPAIRK 179

Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
           ++  +L +P  +     ++TAE I   ++       +K   L ++L+ +   +  I+F  
Sbjct: 180 LTAKYLHDPLEVSTKAKTTTAENISQRYIQVAG--PRKMDALTRVLEVE-PFEAMIVFVR 236

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            K+    +   L  +GFS  AI+G+I Q  R + ++  K+G I ++VA+D+AARGLD+  
Sbjct: 237 TKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVATDVAARGLDVER 296

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  +   + AIEK
Sbjct: 297 ISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLKAIEK 345


>gi|240016422|ref|ZP_04722962.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA6140]
          Length = 462

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 146/369 (39%), Positives = 218/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQR 64

Query: 63  LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLAPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGTSFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR+ D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    ++ + IEV       +  E        ++  +  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNR--LLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L++ ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 361 IEKYINRKL 369


>gi|167748398|ref|ZP_02420525.1| hypothetical protein ANACAC_03142 [Anaerostipes caccae DSM 14662]
 gi|167652390|gb|EDR96519.1| hypothetical protein ANACAC_03142 [Anaerostipes caccae DSM 14662]
          Length = 466

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 147/367 (40%), Positives = 229/367 (62%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L ++ K++ AV + G+   +PIQ   IP+VL+  D+ G AQTGTGKTA+F +P+L  
Sbjct: 15  FDELNINDKILKAVKEMGFEAASPIQGAAIPVVLEGRDIVGQAQTGTGKTAAFGIPLL-- 72

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
            EK   +V+ P+ +IL PTRELA QVAD   K  K  +   V  + GG     Q + L+ 
Sbjct: 73  -EKMDTKVKKPQAMILCPTRELAIQVADEIRKLAKFMHGAKVLPIYGGQNITNQIRSLKT 131

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA++++ TPGRI+DH  R  L + +++++V+DEAD ML+MGF   I++I   VP  RQTL
Sbjct: 132 GANIIVGTPGRIMDHMRRHTLKLEDLKMVVLDEADEMLNMGFREDIESILKEVPEERQTL 191

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +  +++ + ++ K I+V     T   IE  +     +  +K  +L +LL  
Sbjct: 192 LFSATMPKAILDITKKYQKDSKLIKVVRKELTVPNIEQYYYEVRPK--QKVEVLCRLLDM 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + K  I+FCN K+ V  +   L+ +G+    IHG++ Q  R +++ +F+ G + ++VA
Sbjct: 250 H-SPKLSIVFCNTKRMVDEVTGELKGRGYFAEGIHGDLKQSQRDRVMKSFRGGRVDILVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G AFT VA ++I  +  ++
Sbjct: 309 TDVAARGIDVDDVDAVFNYDLPQDDEFYVHRIGRTGRAGRTGNAFTFVAGKEIYKLRDVQ 368

Query: 362 KLIEKKV 368
           +  + K+
Sbjct: 369 RYCKTKI 375


>gi|291447570|ref|ZP_06586960.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|291350517|gb|EFE77421.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
          Length = 458

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 147/376 (39%), Positives = 222/376 (59%), Gaps = 12/376 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F DLG+ P+   A+   G   P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L  
Sbjct: 4   FRDLGIFPETAEALEAVGITSPFPIQELTLPVALSGSDVIGQAKTGTGKTLGFGLPLLER 63

Query: 61  -TI---LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            T+   +E GRA+       P+ L++ PTREL  QV ++    GK  N+ V  + GG  +
Sbjct: 64  VTVPADVEAGRAKPEQLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAY 123

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E Q + L++G DV++ TPGR+LD   + KL +++I  LV+DEAD MLD+GF+P ++ I +
Sbjct: 124 EPQVEALKKGVDVIVGTPGRLLDLAGQRKLDLSHIRGLVLDEADEMLDLGFLPDVERIIT 183

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKK 231
           ++P  RQT+LFSATM   +  ++  ++  P  I   +P     T+++     Y A    K
Sbjct: 184 MLPAKRQTMLFSATMPGAVISLARRYMSQPTHINATSPDDEGTTVKNTVQHVYRAHNMDK 243

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             +L ++LQ+ D     +IFC  K+   ++   LEK+GF+  A+HG++ Q +R + L  F
Sbjct: 244 PEMLARILQA-DGRGLAMIFCRTKRTAADIAEQLEKRGFASGAVHGDLGQGAREQALRAF 302

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAG  G A TLV  
Sbjct: 303 RNGKVDVLVCTDVAARGIDVEGVTHVVNYQSPEDEKTYLHRIGRTGRAGAKGVAITLVDW 362

Query: 352 EDIKHIDAIEKLIEKK 367
           +DI     I K ++ K
Sbjct: 363 DDIPRWQLINKALDLK 378


>gi|170754257|ref|YP_001782408.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum B1 str.
           Okra]
 gi|169119469|gb|ACA43305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum B1 str. Okra]
          Length = 524

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 144/384 (37%), Positives = 235/384 (61%), Gaps = 7/384 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L L+  V+ A+   G+  P+ IQ K+IP+VL+  DV   AQTGTGKT +F  P+++
Sbjct: 5   NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +  + L+L PTRELA Q+ D  ++  K     V  + GG   E Q K ++ 
Sbjct: 65  ALCDNEKK-KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKS 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGRILDH NR  L +  I+ L++DEAD ML+MGFI  I+ I       +QT+
Sbjct: 124 GVDIVVGTPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183

Query: 182 LFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSATM   ++K++ N+++ + + I +   S T + I   + A   +   K   + +++ 
Sbjct: 184 LFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFA--VKNKDKLEAICRIID 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++  ++ IIFC  K+ V  L  +++ +G++V  +HG++ Q  R+  L  FK+ T+  +V
Sbjct: 242 SEEP-ESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HV N+D+P  AE+Y+HRIGRTGRA + G A++LV   ++  I  I
Sbjct: 301 ATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E++I+ K+     +L +L   LEK
Sbjct: 361 ERIIKSKI--TKKELPTLEDILEK 382


>gi|82523824|emb|CAI78566.1| hypothetical protein [uncultured candidate division OP8 bacterium]
          Length = 453

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 217/373 (58%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P ++ A+ + G+ +PTPIQ   IP  +   DV   A TG+GKTA+F+LP+L
Sbjct: 1   MPFSSLHLHPTLLKALKELGFPRPTPIQADAIPPAMSGRDVMASAVTGSGKTAAFLLPIL 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++++ R   R    L++ PTRELAAQ+ ++      +  ++ A + GG+    Q    
Sbjct: 61  HQLIDRPRGTTR---ALVITPTRELAAQILEDLNDLAVHTPISAAAVFGGVSIRPQEHAF 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DVLI TPGR+LDHF      +  +E LV+DEADRMLDMGF+P I+ I   +P  RQ
Sbjct: 118 RRGVDVLIGTPGRLLDHFRAPYAKLAGLEHLVLDEADRMLDMGFLPDIRRILKHIPARRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM   +  ++   L+NP  + +N  ++ A  I     A Y    +  A L   L
Sbjct: 178 TLFFSATMPAPIGVLAREMLRNPATVNINRIAAPAAGITQ---AVYPVAQELKAALLVAL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +D +++ ++F   K     L   L +QG     IHGN  Q  R + L+ FK G  +++
Sbjct: 235 LKRDDIRDALVFTRTKHRANRLAEHLVRQGIKAERIHGNRSQGRRTEALAGFKAGKYRVL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ ++GHV NFDVP   ++YIHR+GRT RA   G AFT V+ ++   +  
Sbjct: 295 VATDIAARGIDVTELGHVVNFDVPLVPDDYIHRVGRTARAEATGDAFTFVSPQEQGDLTR 354

Query: 360 IEKLIEKKVDWLN 372
           IE++I K++  + 
Sbjct: 355 IERVIGKQLPRIT 367


>gi|190571463|ref|YP_001975821.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|190357735|emb|CAQ55186.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
          Length = 408

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 149/361 (41%), Positives = 218/361 (60%), Gaps = 10/361 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++GL   +  A+       PTPIQ++ IPL LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFHEMGLPTLLRQALSKNNLCVPTPIQVQAIPLALQGKDILGSAQTGTGKTLAFAIPLVA 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            L    +   +   L++ PTRELA QV     K   ++  L VALLIGG P   Q  +L+
Sbjct: 63  KLMNEPS---IGSALVIVPTRELAHQVTSEIRKLLSQSSLLRVALLIGGEPIFRQLNQLQ 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++I TPGRI+DH  R  L+  N+ ILV+DE DRM DMGF   I+ I   +P  RQT
Sbjct: 120 KKPQIIIGTPGRIIDHIERKTLVTRNVGILVLDETDRMFDMGFGIQIEEIMKHLPKIRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLL 239
           L+FSAT+  E+ K++E +L  P+R+ V+  ++T+  I+   V  YA  S+K   L+ QL 
Sbjct: 180 LMFSATLPGEIVKLTEKYLNQPERVSVDCQATTSVKIKQEVV--YASESEKYGKLVTQLC 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q + ++   IIF   K+    L   L K  +S  AIHG++ Q  R +++ +F+ G  Q+M
Sbjct: 238 QRKGSI---IIFVKTKRGADQLADKLHKDDYSALAIHGDLRQHKRERVIDSFRRGRNQIM 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDIP + HV N+DVP    +Y+HRIGRT RAG  G A + V  +D + + A
Sbjct: 295 VATDVASRGLDIPHIQHVINYDVPQSQADYVHRIGRTARAGAEGFALSFVTPQDKRRLPA 354

Query: 360 I 360
           +
Sbjct: 355 L 355


>gi|297626176|ref|YP_003687939.1| DEAD/DEAH box helicase domain protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921941|emb|CBL56501.1| DEAD/DEAH box helicase domain protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 501

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 145/406 (35%), Positives = 230/406 (56%), Gaps = 8/406 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FADLG++P +V A+   G   P PIQ   IP+ L   D+ G A+TGTGKT +F +P+L  
Sbjct: 18  FADLGVAPSIVTALDAEGITHPFPIQEMAIPIALTGTDMIGQARTGTGKTLAFGIPILQK 77

Query: 61  TILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +L+      ++     P+ L++ PTRELA QV  +    G++ +  V  + GG+ ++ Q
Sbjct: 78  VVLKTDEGFDQLDPKDKPQALVMSPTRELAQQVGSDLAIAGRDRHARVLTIYGGVGYDDQ 137

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L++G DV++ TPGR+LD  +RG L ++++ I V+DEAD MLD+GF+P +Q +    P
Sbjct: 138 LDALKKGVDVVVGTPGRLLDLVHRGNLDLSHVRIAVLDEADEMLDLGFLPDVQALLDRTP 197

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +RQT++FSATM   +  ++ + L  P  I      + A   +       A    K  ++
Sbjct: 198 ASRQTMMFSATMPAVIMSLARSRLNQPVNIRAEGRDAQATVPQTTQFIYQAHELDKPEMI 257

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            ++LQS+  M+  ++F   K+    L   L  +GF   ++HG+++Q  R K +  F+   
Sbjct: 258 GKMLQSE-GMRKMMVFTRTKRAAQRLADDLRDRGFEAASLHGDLNQSQREKTMKRFRNDK 316

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           IQ++VA+D+AARG+D+ DV HV N++VP+  E Y+HRIGRTGRAG  G A TLV  +D+ 
Sbjct: 317 IQVLVATDVAARGIDVDDVTHVVNYEVPDDPEQYVHRIGRTGRAGHEGVAVTLVDWQDVT 376

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
               I K ++     +    S+    LE + IA     R  +  P+
Sbjct: 377 RWKVINKALDLPFPEIEATFSTTPQFLEDLHIAPDTKGRLADAKPR 422


>gi|127511273|ref|YP_001092470.1| ATP-dependent RNA helicase RhlB [Shewanella loihica PV-4]
 gi|189040043|sp|A3Q9R3|RHLB_SHELP RecName: Full=ATP-dependent RNA helicase rhlB
 gi|126636568|gb|ABO22211.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 435

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 152/414 (36%), Positives = 251/414 (60%), Gaps = 23/414 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FAD  L P++  A++++G+   TPIQ  ++P++L+  D+ G AQTGTGKT +F++     
Sbjct: 11  FADFSLHPEIQQALVESGFEYCTPIQALSLPILLEHKDIAGQAQTGTGKTLAFLVATFNH 70

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            + T +  GR ++  PR +++ PTRELA Q+A + E   K+  L V ++ GG  +E Q K
Sbjct: 71  LLTTPIPDGR-QLNQPRAIVMAPTRELAIQIAKDGELLAKHTGLKVGIVYGGESYEVQRK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+LI T GRI+D+  +G + ++ I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLDKGVDILIGTTGRIIDYVRQGVINLSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDA 189

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234
             R  +LFSAT++ ++Q+++ + + +P+++E+     T++ I E  F   Y     K  L
Sbjct: 190 NERLNMLFSATLSMKVQELAYDHMNDPEKVEIAPSEKTSKNITEEIF---YPSMEDKMRL 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L++ +D  +  I+F N K +  NL   LE  G  V  + G++ Q+ R++IL  F +G
Sbjct: 247 LLTLIE-EDWPEKAIVFSNTKHSCENLWAHLEGDGHRVGLLTGDVPQKKRIRILEQFTKG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG+ G + +   +E  
Sbjct: 306 ELDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEEYA 365

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNNPIPQKSTG 405
            ++ AIE  I+  +   N D  +L    PP  +I        RK++P P   +G
Sbjct: 366 LNLPAIEHYIQHSIPVTNYDSEALLDDIPPPVRIH-------RKHSPRPTGRSG 412


>gi|320103060|ref|YP_004178651.1| DEAD/DEAH box helicase domain-containing protein [Isosphaera
           pallida ATCC 43644]
 gi|319750342|gb|ADV62102.1| DEAD/DEAH box helicase domain protein [Isosphaera pallida ATCC
           43644]
          Length = 422

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 140/369 (37%), Positives = 225/369 (60%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS   + A+    Y  P+PIQ   IP  L+  DV G A+TGTGKTA+F LP++ +
Sbjct: 15  FAELGLSRLTLAALKTVNYRVPSPIQAAFIPPALEGRDVIGQAKTGTGKTAAFSLPLIEM 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E G+     P+ +IL PTREL  Q+   FE+  +  +L V  + GG P E Q + L +G
Sbjct: 75  HEPGQP---GPQAIILAPTRELVQQICGEFERLARGRDLVVRGIYGGEPIERQLRSLAKG 131

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR++DH  RG + +  +  +V+DEADRMLD+GF P I+ I   VP   QTLL
Sbjct: 132 VDVVVGTPGRVIDHLQRGTMSLEGVYHVVLDEADRMLDIGFRPDIERILRKVPQPHQTLL 191

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT++ E+++++  ++  P  + ++    + E I   ++     +++K  LL  LL+ +
Sbjct: 192 LSATLSPEVRRLAARYMHEPVELNLSRDEPSVEKIVQKYIPV--DHNRKMELLLHLLELE 249

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+FC  K+    L   L ++   V  IHG++ Q +R +++  F++G+I ++VA+
Sbjct: 250 KP-RQCIVFCRTKRGADKLAQRLARRYPGVATIHGDLPQTARNRVMRGFRDGSIPILVAT 308

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+  RG+D+ ++ HV N+D+P+  ENY+HRIGRTGR G+ G A+T V  ++   +  IE 
Sbjct: 309 DVVGRGIDVEEISHVVNYDIPDDPENYLHRIGRTGRMGKDGVAYTFVGPDEGIPLTNIEV 368

Query: 363 LIEKKVDWL 371
           LI K ++ +
Sbjct: 369 LINKTLERV 377


>gi|317472067|ref|ZP_07931399.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
 gi|316900471|gb|EFV22453.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
          Length = 528

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 147/367 (40%), Positives = 229/367 (62%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L ++ K++ AV + G+   +PIQ   IP+VL+  D+ G AQTGTGKTA+F +P+L  
Sbjct: 6   FDELNINDKILKAVKEMGFEAASPIQGAAIPVVLEGRDIVGQAQTGTGKTAAFGIPLL-- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
            EK   +V+ P+ +IL PTRELA QVAD   K  K  +   V  + GG     Q + L+ 
Sbjct: 64  -EKMDTKVKRPQAMILCPTRELAIQVADEIRKLAKFMHGAKVLPIYGGQNITNQIRSLKT 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA++++ TPGRI+DH  R  L + +++++V+DEAD ML+MGF   I++I   VP  RQTL
Sbjct: 123 GANIIVGTPGRIMDHMRRHTLKLEDLKMVVLDEADEMLNMGFREDIESILKEVPEERQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +  +++ + ++ K I+V     T   IE  +     +  +K  +L +LL  
Sbjct: 183 LFSATMPKAILDITKKYQKDSKLIKVVRKELTVPNIEQYYYEVRPK--QKVEVLCRLLDM 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + K  I+FCN K+ V  +   L+ +G+    IHG++ Q  R +++ +F+ G + ++VA
Sbjct: 241 H-SPKLSIVFCNTKRMVDEVTGELKGRGYFAEGIHGDLKQSQRDRVMKSFRGGRVDILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G AFT VA ++I  +  ++
Sbjct: 300 TDVAARGIDVDDVDAVFNYDLPQDDEFYVHRIGRTGRAGRTGNAFTFVAGKEIYKLRDVQ 359

Query: 362 KLIEKKV 368
           +  + K+
Sbjct: 360 RYCKTKI 366


>gi|45358020|ref|NP_987577.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           maripaludis S2]
 gi|44920777|emb|CAF30013.1| Probable ATP dependent RNA helicase [Methanococcus maripaludis S2]
          Length = 538

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 139/367 (37%), Positives = 226/367 (61%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F +LGLS +++ A+   G+  PTPIQ + IP++++ + D+ G AQTGTGKTA+F +P+L 
Sbjct: 4   FKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPILE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++     R  + LIL PTRELA QVA+  +    +  L V  + GG   + Q ++L R
Sbjct: 64  TIDE---HSRNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIRELRR 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGRILDH +R  + + N+  +V+DEAD ML+MGFI  ++ I   V   ++ L
Sbjct: 121 GVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRML 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ D + K+++N+++    I+V     T    +  F   +++   K  LL +++ +
Sbjct: 181 LFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSR--DKFELLSRIIDT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +     G+IFC  K +V  + + L ++G++   +HG++ Q  R K L  FK   I ++VA
Sbjct: 239 EKEF-YGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI D+ HV NFD+P   E+Y+HRIGRTGRAG+ G A T V   + +    I+
Sbjct: 298 TDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQ 357

Query: 362 KLIEKKV 368
           K+ + ++
Sbjct: 358 KIAKTEI 364


>gi|327479736|gb|AEA83046.1| ATP-dependent RNA helicase RhlB [Pseudomonas stutzeri DSM 4166]
          Length = 476

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 225/373 (60%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  L+P+++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++  +T 
Sbjct: 90  FHDFKLAPELMHAIHDLGFPYCTPIQAQVLGYTLKGRDAIGRAQTGTGKTAAFLISTITQ 149

Query: 62  ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LE    + R    PR LI+ PTREL  Q+A++     K   L V   +GG+ F+ Q K+
Sbjct: 150 LLETPPPKERYMGEPRALIIAPTRELVVQIANDALDLTKYTGLNVMSFVGGMDFDKQLKQ 209

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 210 LESRYCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 269

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT TD++  +++ +  NP  +E+   +  ++T+E    A     S K  LL
Sbjct: 270 SERQTLLFSATFTDDVMNLAQQWTTNPAVVEIEPENVASDTVEQHVYAVAG--SDKYKLL 327

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ +Q+     ++F N+K  V  +   L K G S   + G++ Q  R++ L  F+EG 
Sbjct: 328 YNLI-TQNDWTRVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 386

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ +  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 387 IRVLVATDVAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGTSISFAGEDDAF 446

Query: 356 HIDAIEKLIEKKV 368
            +  IE LI +K+
Sbjct: 447 ALPPIEALIGRKI 459


>gi|271969585|ref|YP_003343781.1| hypothetical protein Sros_8393 [Streptosporangium roseum DSM 43021]
 gi|270512760|gb|ACZ91038.1| hypothetical protein Sros_8393 [Streptosporangium roseum DSM 43021]
          Length = 697

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 141/359 (39%), Positives = 210/359 (58%), Gaps = 2/359 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG++P++  A+   G + P PIQ   +PL L   D+ G A+TGTGKT +F + ML  
Sbjct: 41  FRDLGVTPEIADALETEGIITPFPIQEMALPLALNGQDIIGQARTGTGKTYAFGVAMLQR 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + K R   + PR L++ PTRELA QV ++           +  + GG  +E Q + L++G
Sbjct: 101 VGKPRKNRKKPRGLVVVPTRELAVQVTEDLVTAAGKLGSRILTVYGGRAYEPQVEALKQG 160

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR+LD   +  L +  I++LV+DEADRMLD+GF+P I+ I  L+P  RQT+L
Sbjct: 161 VDVIVGTPGRLLDLVKQKHLDLGQIDVLVLDEADRMLDLGFLPDIERIIKLIPEKRQTML 220

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQS 241
           FSAT+  E+  +S  +L  P  +      + AE         + A    K  ++ +LLQ 
Sbjct: 221 FSATLPGEIVALSRRYLTRPTHVRAENNDAEAEATPQTTQFVWRAHRMDKIEIVGRLLQC 280

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D     +IFC  K+    +   L+++GF+  A+HG++ Q  R + L  F+ G I ++VA
Sbjct: 281 -DGRGLTMIFCETKRACDMVVEQLKERGFAAAAVHGDLGQGQREQALRAFRNGKIDVLVA 339

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +D+AARG+D+ DV HV N+D P   + Y+HRIGRTGRAG+ G A T V  ED+     I
Sbjct: 340 TDVAARGIDVDDVTHVVNYDCPQDEKAYVHRIGRTGRAGKTGVAVTFVEWEDLTRWKVI 398


>gi|187924463|ref|YP_001896105.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
 gi|187715657|gb|ACD16881.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 542

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 149/388 (38%), Positives = 228/388 (58%), Gaps = 32/388 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA LGLS  VV A+  AGY  PTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 50  FASLGLSADVVSALTAAGYQNPTPVQQRAIPAGIAGRDLMVSSPTGSGKTAAFMLPAIER 109

Query: 61  -TILEKGRA------------RVRMPR------TLILEPTRELAAQVADNFEKYGKNY-N 100
            + L+K +A            R R P+       L+L PTRELA QV      YGK+   
Sbjct: 110 FSQLQKAQASQPREPRPADGARTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKR 169

Query: 101 LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160
           L    ++GG+ +  Q   L +  ++L+ TPGR++DH  RG++ ++ ++ILV+DEADRMLD
Sbjct: 170 LRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLD 229

Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV----NTPSSTAET 216
           MGFI  I+ I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+       ++ A+T
Sbjct: 230 MGFIEDIETIVAATPATRQTMLFSATLDGKITSLTGRLLKDPERIEIVQRLEQRTNIAQT 289

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
           + +           K  LL  LL+ +  +   I+F   K +   L   L   GF   A+H
Sbjct: 290 VHYV-----DDRDHKDRLLDHLLRDEG-LDQAIVFTATKMDADQLAGRLADAGFESAALH 343

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRT
Sbjct: 344 GDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRT 403

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           GRAGR G A +LV   +   +  IE+ +
Sbjct: 404 GRAGRSGIAVSLVHHAEQGALKRIERFV 431


>gi|118602908|ref|YP_904123.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567847|gb|ABL02652.1| ATP-dependent RNA helicase CsdA [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
          Length = 606

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 156/370 (42%), Positives = 229/370 (61%), Gaps = 12/370 (3%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F  LGLS   +  VLDA GY  P+PIQ + I  +L   D+ G AQTGTGKTA+F LP+L 
Sbjct: 14  FKCLGLS-NTILKVLDAIGYETPSPIQEQCITHLLNGEDIIGQAQTGTGKTAAFSLPLLD 72

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++ G   + MP+ LIL PTRELA QV++  + Y +      V  + GG  ++ Q + L+
Sbjct: 73  KIDLG---INMPQLLILTPTRELAIQVSEAVQTYARGMKGFHVLPIYGGQSYDIQLRPLK 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG   ++ TPGR++DH  +G L +++++  V+DEAD ML MGFI  I+ I   +P  RQ 
Sbjct: 130 RGVHAIVGTPGRVMDHIKKGTLKLDHLKSFVLDEADEMLKMGFIDDIKWIMQRIPEQRQI 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQL 238
            LFSATM   ++KV+E FL  PK +++ T + TA TI  ++C V   +Q   K   L ++
Sbjct: 190 ALFSATMPSVIKKVAEQFLNQPKIVKIKTKTETATTITQKYCMVGGLSQ---KLEALTRI 246

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+   T    IIF   K     L   L  +GFS  AI+G+I Q  R +I++N+K+G I +
Sbjct: 247 LEVT-TFDAMIIFVRTKTLTTELAEKLSARGFSAEAINGDIQQNQRERIITNYKKGKIDI 305

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLD+  + HV N+D+P  AE+Y+HRIGRTGRAGR G A   V+  + + ++
Sbjct: 306 LIATDVAARGLDVERISHVVNYDIPQDAESYVHRIGRTGRAGRKGDAILFVSNRERRMLN 365

Query: 359 AIEKLIEKKV 368
            IE +  +K+
Sbjct: 366 TIEHITRQKI 375


>gi|221197472|ref|ZP_03570519.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2M]
 gi|221204145|ref|ZP_03577163.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2]
 gi|221176311|gb|EEE08740.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2]
 gi|221184026|gb|EEE16426.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2M]
          Length = 464

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 151/392 (38%), Positives = 225/392 (57%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P ++  +   GYV  TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L+ 
Sbjct: 9   FSALPLTPAMLANLEQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    +IL PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 69  LDARRFDVQ---AMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLQLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL+NPK +++      ++  +  +  T  +      +L    + 
Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEVKLEERHDDSKIRQRFYEVTETERLHAVGMLLNHYRP 245

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 246 VST----IAFCNTKQQCRDLIDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQAGWALSLASMDEMGRVGAIE 361

Query: 362 KLIEKKVDW------LNGDLSSLNPPLEKIDI 387
           +  ++ V+W           + L PP+E + I
Sbjct: 362 QAQKRDVEWRPLSELTPASDAPLLPPMETLQI 393


>gi|332884045|gb|EGK04325.1| hypothetical protein HMPREF9456_01353 [Dysgonomonas mossii DSM
           22836]
          Length = 374

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 149/374 (39%), Positives = 226/374 (60%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   ++ A+ + GY  PTPIQ K I   L   D+ G+AQTGTGKTA+F LP++
Sbjct: 1   MTFNELNIIEPILKALEEKGYTTPTPIQEKAIIPALTNRDILGLAQTGTGKTAAFSLPII 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               L K   + R  R LIL PTRELA Q+ D+   Y +   L   ++ GG+  +AQ  +
Sbjct: 61  QQLYLNKVSGKRREIRALILTPTRELAIQINDSLNDYTQYTGLRHCVIYGGVKQKAQTDE 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+L+ TPGR+LD  N+G + +++I   V+DEADRMLDMGFI  I+ +   +P  +
Sbjct: 121 LKTGIDILVATPGRLLDLINQGFINLDSIRHFVLDEADRMLDMGFIHDIKRLLPKLPKEK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM   +  +S + L++P ++EV   SS  +TI+      + +  +K  LL  L
Sbjct: 181 QTLFFSATMPSTIASLSRSILRDPLKVEVTPASSVIDTIKQYLY--FVEKQEKKDLLINL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ +D  ++ ++F   K     +   L K G    AIHGN  Q +R + L+NFK    ++
Sbjct: 239 LK-KDKKQSVLVFSRTKHGADKIARLLCKAGIGSEAIHGNKSQNARQRALTNFKSQKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+  +  V N+D+P+  E Y+HRIGRTGRAG  G A T  + E+   ++
Sbjct: 298 LIATDIAARGIDVDQLELVINYDLPDVPETYVHRIGRTGRAGNSGTALTFCSAEENAMLN 357

Query: 359 AIEKLIEKKVDWLN 372
            I+KL  KK++ L+
Sbjct: 358 DIQKLTGKKLNQLS 371


>gi|71281612|ref|YP_268332.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71147352|gb|AAZ27825.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 455

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 147/388 (37%), Positives = 227/388 (58%), Gaps = 22/388 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M    +GLS  ++ AV   GY   TPIQ + IP++ Q  D+   AQTGTGKTA+F LP+L
Sbjct: 1   MSVDSIGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPIL 60

Query: 61  TILEKG-------------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL 101
             + K                     A  +  R LIL PTRELA QVADN +++ +   +
Sbjct: 61  DAIAKANHAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPI 120

Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
              ++ GG    +Q K L++G DVL+ TPGR+L+H     + ++ ++ LV+DEADRMLDM
Sbjct: 121 KSGVVYGGGKMASQTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDM 180

Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
           GF+  I+ +   V    QTL+FSAT +D ++ ++   L++PK I V+  ++T+  I+   
Sbjct: 181 GFLTDIEKLLLAVKHKHQTLMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAV 240

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
              +    +K  LL +L+   +  +  ++F   K++   L   L+  G      HG+  Q
Sbjct: 241 Y--WVTEERKRELLSELI-GVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQ 297

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
            +R K L  F EG ++++VA+D+AARGLDIPD+  V NF +P   E+Y+HR+GRTGRAG+
Sbjct: 298 GARNKALEQFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGK 357

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
            G A +LV+ +D + ++ IE+LIE+K +
Sbjct: 358 SGTAISLVSPKDERFLENIEQLIERKFE 385


>gi|240115845|ref|ZP_04729907.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
 gi|260440339|ref|ZP_05794155.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI2]
 gi|268601522|ref|ZP_06135689.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|291043632|ref|ZP_06569348.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|268585653|gb|EEZ50329.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|291012095|gb|EFE04084.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 462

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 146/369 (39%), Positives = 218/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQR 64

Query: 63  LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLAPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGTSFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR+ D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    ++ + IEV       +  E        ++  +  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNR--LLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L++ ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 361 IEKYINRKL 369


>gi|59801077|ref|YP_207789.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|194098823|ref|YP_002001886.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239999112|ref|ZP_04719036.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae 35/02]
 gi|240113089|ref|ZP_04727579.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
 gi|240125882|ref|ZP_04738768.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           SK-92-679]
 gi|254493889|ref|ZP_05107060.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268594948|ref|ZP_06129115.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268599176|ref|ZP_06133343.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268684482|ref|ZP_06151344.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|293398939|ref|ZP_06643104.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
 gi|59717972|gb|AAW89377.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|193934113|gb|ACF29937.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512929|gb|EEH62274.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548337|gb|EEZ43755.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268583307|gb|EEZ47983.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268624766|gb|EEZ57166.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|291610353|gb|EFF39463.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
 gi|317164404|gb|ADV07945.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 462

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 146/369 (39%), Positives = 218/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQR 64

Query: 63  LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLAPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGTSFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR+ D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    ++ + IEV       +  E        ++  +  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNR--LLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L++ ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 361 IEKYINRKL 369


>gi|169347296|ref|ZP_02866234.1| hypothetical protein CLOSPI_00011 [Clostridium spiroforme DSM 1552]
 gi|169293913|gb|EDS76046.1| hypothetical protein CLOSPI_00011 [Clostridium spiroforme DSM 1552]
          Length = 531

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 233/373 (62%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS +V+ A+ D G+ KP+ IQ K IP++L   D  G AQTGTGKT +F   +L+ 
Sbjct: 6   FEQLGLSEEVLKAIKDMGFSKPSQIQEKAIPILLTGVDAIGQAQTGTGKTLAFGSVLLSK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++      R P+ +IL PTRELA Q+ +   + GK+    +  + GG   E Q + +++G
Sbjct: 66  IKP--IDDRFPQAIILSPTRELAMQIHEEMNRIGKHNGSKIVCVFGGSDIEKQIRSIKKG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR++D   R  L  +N++ +V+DEAD ML+MGF+  I+ I   V   RQT+L
Sbjct: 124 VDIVVGTPGRVMDLMRRKVLKFDNVKYVVLDEADEMLNMGFVEDIETILEKVDDARQTIL 183

Query: 183 FSATMTDELQKVSENFLQNP-KRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           FSATM   ++K+++N++ +  K + V +  +TA +++  +  V    ++   C L+    
Sbjct: 184 FSATMPAGIKKIAQNYMHDDFKHVAVLSKQTTATSVKQFYYEVKPKDRFETLCRLIDVA- 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +K GIIFC  K++V  +   +++  ++V A+HG+++Q  RM  L  FK+GTI  +
Sbjct: 243 ----NIKTGIIFCRTKRSVDEVTEQMQQSNYNVEAMHGDLNQNHRMNTLRKFKKGTINFL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V HV N+++P   E+Y+HRIGRTGRA + G A+++++ +++  +  
Sbjct: 299 VATDVAARGIDVENVTHVINYELPQDIESYVHRIGRTGRADKEGLAYSIISPKEVSFLKQ 358

Query: 360 IEKLIEKKVDWLN 372
           IE++ +  +  +N
Sbjct: 359 IERVTKSTITKVN 371


>gi|116515159|ref|YP_802788.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116257013|gb|ABJ90695.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 576

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 143/369 (38%), Positives = 222/369 (60%), Gaps = 8/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+  GL+  ++ ++   GY KP+PIQ   IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 6   LSFSVFGLNSFLLKSLKILGYEKPSPIQSACIPYLLSGKDVLGMAQTGSGKTAAFALPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL-LIGGIPFEAQNKKL 119
             +      ++ P+ L+L PTRELA QVA +F  + K    T  L L GG  +E Q   L
Sbjct: 66  NNIN---ISLKFPQILVLVPTRELAVQVAKSFSDFSKYLIGTQVLALYGGQRYEIQLHAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG  +++ TPGR+LDH  RG L + ++  LV+DEAD ML MGFI  ++ I S +P   Q
Sbjct: 123 RRGPQIIVGTPGRLLDHLKRGTLSLIHLSSLVLDEADEMLRMGFIEDVETIMSKIPRKHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++S  F+  PK I++ +   T   I+  +   +    +K   L + L
Sbjct: 183 TALFSATMPNIIRRISRRFMNTPKEIKIQSTGITRPDIQQSY---WIVRGRKTDALIRFL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +D     IIF   K   + +  +LEK G++  A++G+++Q  R + L   K G + ++
Sbjct: 240 EVED-FSATIIFVRTKNATLEVSEALEKNGYNSAALNGDMNQVLREQTLERLKNGKLDIL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 299 IATDVAARGLDVDRISFVINYDIPTDAESYVHRIGRTGRAGRTGRALLFVEYREYRLLKN 358

Query: 360 IEKLIEKKV 368
           IE++I+  +
Sbjct: 359 IERIIKHPI 367


>gi|326203304|ref|ZP_08193169.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325986562|gb|EGD47393.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 542

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 144/362 (39%), Positives = 212/362 (58%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+S  ++ A+ D G+  PT +Q K IP +L   D+  +++TG+GKTA F + ML +
Sbjct: 5   FNDLGVSAPLLKAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVSMLQM 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +        P  LIL P RELA QV  +  K  K        + G      + + L++G
Sbjct: 65  TD---PEAEGPLGLILTPARELAVQVDSDIHKMAKYLKHKTTAVYGQHNINVETQTLKKG 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ DH + G L+  NI  LV+DEADRMLDMGF+  +  I   +P  R TLL
Sbjct: 122 VSIVTGTPGRVFDHISHGSLVTKNIRFLVLDEADRMLDMGFLDQVVRIIKTLPKDRITLL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+  +   ++QNP  IE+ + + T +TI   +      Y++K   L +LL  +
Sbjct: 182 FSATMPPEIHNICSRYMQNPTTIEIESQTKTVDTIHQVYY--RVNYNEKNTQLNRLLIVE 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              ++ +IFCN K  V  +   L K+G+S  A+HG+I Q  R+  +  FK+G   ++VA+
Sbjct: 240 KP-ESCMIFCNTKAAVDRVQSFLTKKGYSSQALHGDIPQSKRLNTIQQFKQGKFHILVAT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+ I  +  V N+DVPN  +NY+HRIGRTGRAG  G+AF+LV  +DI  +  IE+
Sbjct: 299 DVAARGIHIEGLSLVINYDVPNDKDNYVHRIGRTGRAGHDGRAFSLVTGDDIISLYEIEE 358

Query: 363 LI 364
            I
Sbjct: 359 HI 360


>gi|319651117|ref|ZP_08005250.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
 gi|317397171|gb|EFV77876.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
          Length = 463

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 149/381 (39%), Positives = 230/381 (60%), Gaps = 17/381 (4%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ +PTPIQ + IP+ ++  D+ G AQTGTGKT +F +P+L  ++         + L+L 
Sbjct: 2   GFEEPTPIQAQAIPIGMKGKDMIGQAQTGTGKTTAFGVPLLEQIDLNEG----IQGLVLA 57

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA QVA+   + G+   +    + GG     Q + L++   ++  TPGR++DH  R
Sbjct: 58  PTRELAVQVAEELNRIGQVKGVRTLPVYGGQDITRQIRALKKHPHIIAATPGRLIDHIER 117

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
             + ++NI+++V+DEAD ML+MGFI  I+ I S +   RQTLLFSATM   +Q ++E F+
Sbjct: 118 KTIRLSNIKMVVLDEADEMLNMGFIEDIERILSEIKGERQTLLFSATMPKRIQSLAEKFM 177

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
           Q P+ ++V     T + IE  ++  + +  +K  +L  LL  Q + +  I+F   KK V 
Sbjct: 178 QEPEMVKVKAKEMTVKNIEQYYMEVHEK--QKFDVLCNLLDIQ-SPELAIVFGRTKKRVD 234

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            +   L K+G+S   IHG+I Q  R +++  FKE TI +MVA+D+AARGLDI  V HV+N
Sbjct: 235 EVVEGLIKRGYSAEGIHGDIPQAKRDQVIRRFKEQTIDIMVATDVAARGLDISGVSHVYN 294

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV---------DW 370
           FD+P   E+Y+HRIGRTGRAG  G A T V+  +I H+  IE + + K+         D 
Sbjct: 295 FDIPQDPESYVHRIGRTGRAGNKGLAITFVSPREIDHLKIIESVTKSKMAKKPVPSFKDV 354

Query: 371 LNGD-LSSLNPPLEKIDIAQH 390
           + G+  +++N  +E I+  +H
Sbjct: 355 VAGNQQATINKLMEVIEKEEH 375


>gi|148380762|ref|YP_001255303.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153932415|ref|YP_001385046.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936759|ref|YP_001388516.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           Hall]
 gi|148290246|emb|CAL84365.1| ATP-dependent RNA helicase (cold-shock dead-box protein)
           [Clostridium botulinum A str. ATCC 3502]
 gi|152928459|gb|ABS33959.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932673|gb|ABS38172.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. Hall]
          Length = 524

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 144/384 (37%), Positives = 236/384 (61%), Gaps = 7/384 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L L+  V+ A+   G+  P+ IQ K+IP+VL+  DV   AQTGTGKT +F  P+++
Sbjct: 5   NFENLNLNEDVLKAIQYMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   + + +  + L+L PTRELA Q+ D  ++  K     V  + GG   E Q K ++ 
Sbjct: 65  AL-CDKEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKS 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGRILDH NR  L +  I+ L++DEAD ML+MGFI  I+ I       +QT+
Sbjct: 124 GVDIVVGTPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183

Query: 182 LFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSATM   ++K++ N+++ + + I +   S T + I   + A   +   K   + +++ 
Sbjct: 184 LFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFA--VKNKDKLEAICRIID 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++  ++ IIFC  K+ V  L  +++ +G++V  +HG++ Q  R+  L  FK+ T+  +V
Sbjct: 242 SEEP-ESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HV N+D+P  AE+Y+HRIGRTGRA + G A++LV   ++  I  I
Sbjct: 301 ATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E++I+ K+     +L +L   LEK
Sbjct: 361 ERIIKSKI--TKKELPTLEDILEK 382


>gi|306819140|ref|ZP_07452854.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris ATCC 35239]
 gi|304648116|gb|EFM45427.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris ATCC 35239]
          Length = 523

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 145/405 (35%), Positives = 228/405 (56%), Gaps = 19/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D G+ P++V A+ D G + P PIQ  T+P+ ++RHD+ G A+TGTGKT  F +P+L  
Sbjct: 34  FSDFGVEPEIVAALADKGIIHPFPIQALTLPVAIERHDIIGQAKTGTGKTLGFAIPILHD 93

Query: 63  L----EKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    ++G   +     P+ L+L PTRELA QVA        +    +  + GG+ F++Q
Sbjct: 94  IIGPGDEGWDELPSPGAPQALVLLPTRELAKQVAAEIRAAASHRVARILEIYGGVGFDSQ 153

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L+ G +V++ TPGR++D    G+L +  +  LV+DEAD MLDMGF+P ++ + +  P
Sbjct: 154 IQSLKDGVEVVVGTPGRLIDLMKHGELQLKEVRTLVLDEADEMLDMGFLPDVEVLIAATP 213

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234
             R T+LFSATM   +  ++  ++  P  I    PS  ++T+       Y  +S  K  +
Sbjct: 214 PERHTMLFSATMPGPVVALARRYMYQPTHIRAADPSDDSKTVRQVHQFAYRVHSMNKEEV 273

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + ++LQ+++     IIF   K++   L   L  +GF+  AIHG+++Q +R + L  F+ G
Sbjct: 274 VARILQAKNRGLT-IIFTRTKRSCQRLADELTNRGFAAGAIHGDLNQSARERALRAFRHG 332

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV NF+ P   + YIHRIGRT RAG  G A T V  E +
Sbjct: 333 KVDVLVATDVAARGIDVDDVTHVINFECPEDEKTYIHRIGRTARAGHSGTAVTFVDWESV 392

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
                I + +E            L  P E    + H +A  N PI
Sbjct: 393 TRWRVINRALE----------LGLENPTETYHTSAHLYADLNIPI 427


>gi|269124787|ref|YP_003298157.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora
           curvata DSM 43183]
 gi|268309745|gb|ACY96119.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM
           43183]
          Length = 562

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 149/377 (39%), Positives = 214/377 (56%), Gaps = 23/377 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P+++ A+   GY +PTPIQ + IP +L   D+ G A TGTGKTA+F LP+L  
Sbjct: 12  FADLQLRPELLTALAGLGYEEPTPIQREAIPHLLAGRDLLGQAATGTGKTAAFALPILH- 70

Query: 63  LEKGRARVRMPR--------TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   R PR         L+L PTRELA QVAD F +YG+   + V  + GG P   
Sbjct: 71  --------RTPRPADEPDPGALVLVPTRELAVQVADAFHRYGREMGVRVLPVYGGAPIGR 122

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L+RG DV++ TPGR LD  +R  L +  +  +V+DEAD MLDMGF   I+ I +  
Sbjct: 123 QIQVLKRGVDVVVATPGRALDLIDRDVLRLARLRTVVLDEADEMLDMGFAEDIEAILAQT 182

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV---ATYAQYSKK 231
           P  RQT+LFSAT+   +  ++   L+ P RIE+  P    E      V   A     + K
Sbjct: 183 PPQRQTVLFSATVPPRIDGIARRHLREPVRIEIARPER--EVGRPPLVRQRAYVVDRAHK 240

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
            A L +LL  +      I+FC  +  V  L   L  +G+   A+HG + Q  R +++   
Sbjct: 241 PAALGRLLDVE-APTAAIVFCRTRDQVDELTEMLNGRGYRAEALHGGMSQDQRDRVMGRL 299

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + GT +L++A+D+AARG+D+  + HV N+ VP+  ++Y+HRIGR GRAGR G AFTL   
Sbjct: 300 RAGTAELLIATDVAARGIDVEHLTHVVNYHVPSDPDSYVHRIGRVGRAGREGVAFTLAEP 359

Query: 352 EDIKHIDAIEKLIEKKV 368
            + + + +IE+    K+
Sbjct: 360 REHRMLKSIERATGHKI 376


>gi|159037848|ref|YP_001537101.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           arenicola CNS-205]
 gi|157916683|gb|ABV98110.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
           CNS-205]
          Length = 574

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 144/367 (39%), Positives = 212/367 (57%), Gaps = 3/367 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL  +++ A+   GY +PTPIQ + IP +L   D+ G A TGTGKTA+F LP+L  
Sbjct: 18  FVDLGLRDELLAALAALGYEEPTPIQREAIPPLLAGRDLLGQAATGTGKTAAFALPLLQR 77

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +   R     P  L+L PTRELA QV++ F +YGK     V  + GG P   Q + L+ G
Sbjct: 78  MSVDRP-TGDPVALVLVPTRELAVQVSEAFHRYGKELGTRVLPIYGGQPIGRQLRALDSG 136

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR LDH  RG L + ++  +V+DEAD MLDMGF   I+ I    P  RQT+L
Sbjct: 137 VDVVVATPGRALDHIARGTLRLGDVGTVVLDEADEMLDMGFAEDIEAILEHAPEQRQTVL 196

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQS 241
           FSATM   +  ++   L +P RI +      A        + Y    + K A L ++L  
Sbjct: 197 FSATMPARIDGMARAHLTDPIRILIAREQPVAGEAPRVRQSAYLVARAHKPAALGRVLDI 256

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + +    I+FC  ++ V  L  ++  +G+   A+HG + Q  R +++   + GT  L++A
Sbjct: 257 E-SPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLMA 315

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+DVP+  E+Y+HRIGR GRAGR G A TL      + +  IE
Sbjct: 316 TDVAARGLDVEQLSHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPRAHRMLKTIE 375

Query: 362 KLIEKKV 368
           ++  +++
Sbjct: 376 RVTGQRI 382


>gi|303238769|ref|ZP_07325301.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302593648|gb|EFL63364.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 544

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 141/362 (38%), Positives = 227/362 (62%), Gaps = 9/362 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL LS ++  A+ D G+ + TPIQ +TIP +L+  D+ G AQTGTGKT +F +P + +
Sbjct: 6   FKDLNLSDEIQKAIADMGFEEATPIQSQTIPQILKGIDLIGQAQTGTGKTCAFGIPAIEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKLE 120
           L+     +++   LIL PTRELA Q+++      K Y   + +L   GG P + Q   L+
Sbjct: 66  LDPQNEGIQV---LILSPTRELAIQISEELRDVSK-YKEGIKILPVYGGQPIDRQIAALK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++I TPGRI+DH  R  L + ++++L++DEAD ML+MGF   I  I   VP  +QT
Sbjct: 122 KRPQIIIGTPGRIMDHMRRRTLKLADLKMLILDEADEMLNMGFREDIDTILEKVPEEKQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  E+  ++  +L+NP  I+      T  +IE  ++      S K  +L +L+ 
Sbjct: 182 ILFSATMPKEILDLTSKYLKNPLHIKAAHKQMTVPSIEQFYLE--VSQSSKLEILSRLID 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + +   ++FCN K+ V  L  SL+ +G+S  A+HG++ Q  R ++++ F++G I +++
Sbjct: 240 A-NNIGLSLVFCNTKRQVDELTSSLQSRGYSTEALHGDMKQDQRNRVMTKFRKGQIDILI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ +V  VFN+D+P+  E Y+HRIGRTGRAG+ GK+FT V   +I  +  I
Sbjct: 299 ATDVAARGIDVDNVEAVFNYDLPSDEEYYVHRIGRTGRAGKTGKSFTFVVGREIHKLKDI 358

Query: 361 EK 362
           ++
Sbjct: 359 QR 360


>gi|295676852|ref|YP_003605376.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
 gi|295436695|gb|ADG15865.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 544

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 148/384 (38%), Positives = 220/384 (57%), Gaps = 24/384 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLS +VV A+  AGY  PTP+Q + +P  +   D+   + TG+GKTA+F+LP +  
Sbjct: 38  FASLGLSAEVVSALTAAGYEHPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 97

Query: 63  L-----------------EKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNY-N 100
                             + GR R    V  P  L+L PTRELA QV      YGK+   
Sbjct: 98  FAQLQKAQASQPREPRPADGGRGRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKR 157

Query: 101 LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160
           L    ++GG+ +  Q   L +  ++L+ TPGR++DH  RG++ ++ ++ILV+DEADRMLD
Sbjct: 158 LRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLD 217

Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
           MGFI  I  I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+         I   
Sbjct: 218 MGFIDDIDTIVAETPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRTNISQT 277

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
            V        K  LL  LL++ D +   I+F   K +   L   L   GF   A+HG++ 
Sbjct: 278 -VHYVDDRDHKDRLLDHLLRA-DGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLP 335

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTGRAG
Sbjct: 336 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 395

Query: 341 RHGKAFTLVAKEDIKHIDAIEKLI 364
           R G A +LV   +   +  IE+ +
Sbjct: 396 RSGIAVSLVHHAEQGALKRIERFV 419


>gi|240080542|ref|ZP_04725085.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA19]
 gi|240118143|ref|ZP_04732205.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
 gi|240123692|ref|ZP_04736648.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
 gi|268596673|ref|ZP_06130840.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268603859|ref|ZP_06138026.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268682325|ref|ZP_06149187.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268550461|gb|EEZ45480.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268587990|gb|EEZ52666.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268622609|gb|EEZ55009.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
          Length = 462

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 146/369 (39%), Positives = 218/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQR 64

Query: 63  LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLAPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGTSFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR+ D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    ++ + IEV       +  E        ++  +  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNR--LLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L++ ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 361 IEKYINRKL 369


>gi|289422689|ref|ZP_06424529.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
 gi|289156868|gb|EFD05493.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
          Length = 547

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 146/368 (39%), Positives = 226/368 (61%), Gaps = 7/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L +  ++  A+ D GY +P+PIQ K IP+VL+ +DV G AQTGTGKTA+F +P+L 
Sbjct: 5   NFNELAVKEEITRAIADLGYEQPSPIQAKAIPVVLEGYDVIGQAQTGTGKTAAFSIPLLE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLE 120
            ++    R++    ++L PTRELA QV++   K  K  +    L I GG P + Q K L+
Sbjct: 65  KIDPSDKRLQ---AIVLCPTRELAIQVSEEVRKLAKYLHGVKTLPIYGGQPIDRQIKALK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  V+I TPGR++DH NR  L  + ++++V+DEAD MLDMGF   I+ I S  P  RQT
Sbjct: 122 GGVQVIIGTPGRVIDHINRKTLKPSTVKMVVMDEADEMLDMGFREDIETILSSTPQERQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   + ++++ + + P  I+V     T   I+  ++ T  + S K  +L +L+ 
Sbjct: 182 SLFSATMPKAILELTQKYQKEPVHIKVVRKELTVNNIKQFYIET--RKSNKLEVLTRLID 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  K  ++F N KK    L   L+ +G+   ++HG++ Q  R  ++  F+ GTI ++V
Sbjct: 240 VYNP-KLTVVFTNTKKGADELVSDLQARGYGADSLHGDLKQVQRDIVMDKFRHGTIDILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV  V N+++P   E Y+HRIGRTGRAGR G AF+ V   +++ +  I
Sbjct: 299 ATDVAARGIDVDDVECVINYELPQDEEYYVHRIGRTGRAGRDGIAFSFVFGREMRKLKDI 358

Query: 361 EKLIEKKV 368
           E+  + KV
Sbjct: 359 ERYTKSKV 366


>gi|255690282|ref|ZP_05413957.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides
           finegoldii DSM 17565]
 gi|260624185|gb|EEX47056.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides
           finegoldii DSM 17565]
          Length = 621

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 141/367 (38%), Positives = 227/367 (61%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+SP++  A+ + GY  P P+Q K IP +L + +DV  +AQTGTGKTA+F LP+L 
Sbjct: 4   FEELGVSPEIRRAIEEMGYENPMPVQEKVIPYLLGENNDVVALAQTGTGKTAAFGLPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            ++    + R+P++LIL PTREL  Q+A +   Y K  + L V  + GG   ++Q + L+
Sbjct: 64  QID---VKNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  + ++ I  +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTESINAILADVPKERNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+ ++S+N+LQN K I +   + +   ++H     +A+   K   L++++ 
Sbjct: 181 LLFSATMSPEIARISKNYLQNAKEITIGRKNESTSNVKHVAYTVHAK--DKYEALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+V
Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357

Query: 361 EKLIEKK 367
           E++I KK
Sbjct: 358 ERIIGKK 364


>gi|162139465|ref|YP_001171714.2| ATP-dependent RNA helicase RhlB [Pseudomonas stutzeri A1501]
          Length = 476

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 225/373 (60%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  L+P+++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++  +T 
Sbjct: 90  FHDFKLAPELMHAIHDLGFPYCTPIQAQVLGYTLKGRDAIGRAQTGTGKTAAFLISTITQ 149

Query: 62  ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LE    + R    PR LI+ PTREL  Q+A++     K   L V   +GG+ F+ Q K+
Sbjct: 150 LLETPPPKERYMGEPRALIIAPTRELVVQIANDALDLTKYTGLNVMSFVGGMDFDKQLKQ 209

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 210 LESRYCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 269

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT TD++  +++ +  NP  +E+   +  ++T+E    A     S K  LL
Sbjct: 270 SERQTLLFSATFTDDVMNLAQQWTTNPAVVEIEPENVASDTVEQHVYAVAG--SDKYKLL 327

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ +Q+     ++F N+K  V  +   L K G S   + G++ Q  R++ L  F+EG 
Sbjct: 328 YNLI-TQNDWTRVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 386

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ +  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 387 IRVLVATDVAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGTSISFAGEDDAF 446

Query: 356 HIDAIEKLIEKKV 368
            +  IE LI +K+
Sbjct: 447 ALPPIEALIGRKI 459


>gi|284038208|ref|YP_003388138.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
 gi|283817501|gb|ADB39339.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
          Length = 380

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 150/375 (40%), Positives = 226/375 (60%), Gaps = 7/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+    Y KP PIQ + IP +LQ  D+ GIA+TG+GKTASFVLP+L
Sbjct: 1   MPFSELGLSKPLIKAIASQHYPKPYPIQQEAIPAILQGKDILGIAKTGSGKTASFVLPIL 60

Query: 61  TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNK 117
            + + K  AR R  + L L PTRELA QVA+ F+ +  N    +    + GG+    Q  
Sbjct: 61  ELFQRKSVARNRYIKALALVPTRELAVQVAEVFQTFSANLPRKVKTVAVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L R A++++ TPGR+LD      L + +++ILV+DEAD+MLD+GF   ++ I   +P  
Sbjct: 121 AL-RDAEIVVATPGRLLDLMASNALQLTDVDILVLDEADKMLDLGFEEEMERIFDRLPRH 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT+ D ++ +++N L+NP +IEV       + I+    A      +K  LL+ 
Sbjct: 180 RQTILFSATLGDAIEDINKNLLRNPVKIEVVEEEQNLDLIKQT--AYRVDAERKGPLLRY 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++ +  MK  ++F +  +   N+   L K G    AIH    Q +R   L+ FK G + 
Sbjct: 238 LIK-EGKMKQVLVFVSSTRTADNVVVKLNKNGIHAAAIHSGKTQGARTDALTKFKGGHLT 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+DL +RG+DI  + HV NF++P   ++YIHRIGRTGRA   G+A +L+  ED  H 
Sbjct: 297 VLVATDLISRGIDIQLLPHVINFELPRSPKDYIHRIGRTGRAEAEGEAISLICPEDEHHF 356

Query: 358 DAIEKLIEKKVDWLN 372
             I+K + K+V+ L 
Sbjct: 357 KIIQKKMGKRVEILE 371


>gi|28897062|ref|NP_796667.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837936|ref|ZP_01990603.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ3810]
 gi|260363937|ref|ZP_05776676.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus K5030]
 gi|260877980|ref|ZP_05890335.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AN-5034]
 gi|260896348|ref|ZP_05904844.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus
           Peru-466]
 gi|260900676|ref|ZP_05909071.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ4037]
 gi|28805270|dbj|BAC58551.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748714|gb|EDM59565.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ3810]
 gi|308085198|gb|EFO34893.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus
           Peru-466]
 gi|308090073|gb|EFO39768.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AN-5034]
 gi|308110247|gb|EFO47787.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ4037]
 gi|308112560|gb|EFO50100.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus K5030]
 gi|328471865|gb|EGF42742.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus 10329]
          Length = 459

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 147/367 (40%), Positives = 224/367 (61%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+P ++  +    Y   TPIQ  ++P +L + DV G  +TG+GKTA+F L +L+ 
Sbjct: 6   FDQVGLNPALLETLDSLNYTHMTPIQALSLPAILNQRDVIGQGKTGSGKTAAFGLGVLSN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+    L+L PTRELA QVA      G+  +N+ V  L GG+P   Q   LE 
Sbjct: 66  LNVKRFRVQ---ALVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH  +G++ +  +  LV+DEADRML+MGF   +  I +  P  RQTL
Sbjct: 123 GAHILVGTPGRILDHLEKGRINLEELNTLVLDEADRMLEMGFQDALDAIINAAPKQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  ++++K+++  +++P+ I+V +   T+ +I   F       ++  AL   LL  
Sbjct: 183 LFSATFPEKIEKIAQRIMKSPEMIKVESTHDTS-SIAQYFYKVEGTEARDEALANLLLTY 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ ++FCN KK V N+   L  +GFSV  IHG+++QR R + L  F   ++ ++VA
Sbjct: 242 QP--ESAVVFCNTKKEVQNVADELHHRGFSVIDIHGDLEQRERDQALVQFANKSVSILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+   ++D   +  IE
Sbjct: 300 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIE 359

Query: 362 KLIEKKV 368
           + +E  V
Sbjct: 360 EYLEMDV 366


>gi|227875859|ref|ZP_03993985.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243]
 gi|269977494|ref|ZP_06184466.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris 28-1]
 gi|307700011|ref|ZP_07637060.1| putative DEAD-box ATP-dependent RNA helicase CshA [Mobiluncus
           mulieris FB024-16]
 gi|227843607|gb|EEJ53790.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243]
 gi|269934410|gb|EEZ90972.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris 28-1]
 gi|307614772|gb|EFN93992.1| putative DEAD-box ATP-dependent RNA helicase CshA [Mobiluncus
           mulieris FB024-16]
          Length = 523

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 145/405 (35%), Positives = 228/405 (56%), Gaps = 19/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D G+ P++V A+ D G + P PIQ  T+P+ ++RHD+ G A+TGTGKT  F +P+L  
Sbjct: 34  FSDFGVEPEIVAALADKGIIHPFPIQALTLPVAIERHDIIGQAKTGTGKTLGFAIPILHD 93

Query: 63  L----EKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    ++G   +     P+ L+L PTRELA QVA        +    +  + GG+ F++Q
Sbjct: 94  IIGPGDEGWDELPSPGAPQALVLLPTRELAKQVAAEIRAAASHRVARILEIYGGVGFDSQ 153

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L+ G +V++ TPGR++D    G+L +  +  LV+DEAD MLDMGF+P ++ + +  P
Sbjct: 154 IQSLKDGVEVVVGTPGRLIDLMKHGELQLKEVRTLVLDEADEMLDMGFLPDVEVLIAATP 213

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234
             R T+LFSATM   +  ++  ++  P  I    PS  ++T+       Y  +S  K  +
Sbjct: 214 PERHTMLFSATMPGPVVALARRYMYQPTHIRAADPSDDSKTVRQVHQFAYRVHSMNKEEV 273

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + ++LQ+++     IIF   K++   L   L  +GF+  AIHG+++Q +R + L  F+ G
Sbjct: 274 VARILQAKNRGLT-IIFTRTKRSCQRLADELTNRGFAAGAIHGDLNQSARERALRAFRHG 332

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV NF+ P   + YIHRIGRT RAG  G A T V  E +
Sbjct: 333 KVDVLVATDVAARGIDVDDVTHVINFECPEDEKTYIHRIGRTARAGHSGTAVTFVDWESV 392

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
                I + +E            L  P E    + H +A  N PI
Sbjct: 393 TRWRVINRALEL----------GLENPTETYHTSAHLYADLNIPI 427


>gi|117620037|ref|YP_857223.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117561444|gb|ABK38392.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 408

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 144/346 (41%), Positives = 217/346 (62%), Gaps = 5/346 (1%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR--MPRTLILEPTR 82
           TP+Q + IP + +  DV   AQTGTGKTA+F LP+L  L    A V+    R LIL PTR
Sbjct: 2   TPVQQQAIPAIRRGRDVLASAQTGTGKTAAFALPILQRLVDNPAPVQPSNARVLILTPTR 61

Query: 83  ELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142
           ELAAQVA N   + K+ ++T   + GG   + Q +KL+ GA +++ TPGR+L+H     L
Sbjct: 62  ELAAQVASNINDFAKHLDITTLTIYGGGKQDVQARKLKAGAHIIVATPGRLLEHLTACNL 121

Query: 143 LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNP 202
            ++ +E LV+DEADR+LDMGF   +Q I   V  TRQ LLFSAT ++ ++K++   L  P
Sbjct: 122 SLSGVECLVLDEADRILDMGFSADVQQILQAVNKTRQNLLFSATFSEAVKKLANLMLDKP 181

Query: 203 KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLC 262
           + + VN  +STA+T+ H       +  +K  LL +L+  Q+     ++F + +++   L 
Sbjct: 182 QIVSVNKQNSTADTVSHTVYPV--EQKRKRELLSELIGKQN-WPQVLVFASTRESCDELV 238

Query: 263 HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322
             L   G     +HG+  Q SR + L  F EG ++++VA+++AARGLDIPD+ +V N+D+
Sbjct: 239 AELNLDGIKSAVVHGDKAQGSRRRALREFTEGKLRVLVATEVAARGLDIPDLEYVVNYDL 298

Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           P  AE+Y+HRIGRTGRAG+ G A + V++E+ + +  IE LI +K+
Sbjct: 299 PFLAEDYVHRIGRTGRAGKSGMAISFVSREEERTLLEIEALIGQKI 344


>gi|261212543|ref|ZP_05926828.1| cold-shock DEAD-box protein A [Vibrio sp. RC341]
 gi|260838474|gb|EEX65130.1| cold-shock DEAD-box protein A [Vibrio sp. RC341]
          Length = 639

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 141/370 (38%), Positives = 221/370 (59%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N   L V  + GG     Q + L
Sbjct: 66  NKLNLSQHK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P T Q
Sbjct: 123 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPETAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL+NP+ ++V   + T   +E  +        +K   + +LL
Sbjct: 183 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVD 369
           IE++    ++
Sbjct: 360 IERVTRSSME 369


>gi|226356665|ref|YP_002786405.1| DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti VCD115]
 gi|226318655|gb|ACO46651.1| putative DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti
           VCD115]
          Length = 602

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 137/365 (37%), Positives = 215/365 (58%), Gaps = 9/365 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  L ++P++   + + G  + +PIQ +++PL L   D+ G A+TGTGKT +F LP++
Sbjct: 1   MNFDQL-IAPELAARLAERGITEASPIQAESLPLTLAGRDMIGRARTGTGKTLAFALPII 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE  R R R PR +++ PTRELA QVA+ F K G    LT   + GG  +  Q   L 
Sbjct: 60  QKLEPSRERARPPRAIVVAPTRELAKQVAEEFSKSG--VGLTTVTVYGGASYAPQENALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR++DH  RG L ++ +E  V+DEAD ML +GF   I+ I    P +RQT
Sbjct: 118 RGVDVVVGTPGRLIDHLERGNLDLSAVEFAVLDEADEMLSVGFADAIETILQKTPDSRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +LFSAT+ +++ ++S N+L+ P  +++     S  A+T+EH  V      ++  A L  +
Sbjct: 178 MLFSATLNNDINRLSRNYLREPVIVDMVGEGKSQAAQTVEHLKVRVGRSRTRVLADLLTI 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +      I+F   K+    L + L  +G    A+HG++ Q  R + L  F+ G + +
Sbjct: 238 YNPE----KAIVFTRTKREADELANELIHRGLEAEALHGDLAQSQRERALGAFRSGRVGV 293

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIP+V  V  + +P   E+Y+HR GRTGRAGR G A  +    + + + 
Sbjct: 294 LVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIIMYGDRENREVM 353

Query: 359 AIEKL 363
            +E++
Sbjct: 354 GLERI 358


>gi|159904844|ref|YP_001548506.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           maripaludis C6]
 gi|159886337|gb|ABX01274.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
           C6]
          Length = 546

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 138/362 (38%), Positives = 223/362 (61%), Gaps = 7/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F +LGLS +++ A+   G+  PTPIQ + IP++++ + DV G AQTGTGKTA+F +P+L 
Sbjct: 4   FKNLGLSDEIIKALEKKGFTNPTPIQEQAIPILIEGKRDVVGQAQTGTGKTAAFGIPILE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++G    R  + LIL PTRELA QVA+  +    +  L +  + GG   + Q ++L+R
Sbjct: 64  TIDEGS---RNTQALILAPTRELAIQVAEEIDSIKGSKRLNIFPVYGGQSIDRQIRELKR 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGRILDH +R  + + N+  +V+DEAD ML+MGFI  ++ I   V   ++ L
Sbjct: 121 GVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTEKRML 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ D + K+++N+++    I+V     T    +  +   +++   K  LL +++  
Sbjct: 181 LFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSYYEIHSR--DKFELLSRIIDV 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +     G+IFC  K +V  +   L ++G++   +HG++ Q  R K L  FK   I ++VA
Sbjct: 239 EKEF-YGLIFCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLEKFKARKINVLVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI D+ HV N+D+P   E+Y+HRIGRTGRAG+ G A T V   + +    I+
Sbjct: 298 TDVAARGIDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKFKYIQ 357

Query: 362 KL 363
           K+
Sbjct: 358 KI 359


>gi|312143554|ref|YP_003995000.1| DEAD/DEAH box helicase domain protein [Halanaerobium sp.
           'sapolanicus']
 gi|311904205|gb|ADQ14646.1| DEAD/DEAH box helicase domain protein [Halanaerobium sp.
           'sapolanicus']
          Length = 529

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 146/367 (39%), Positives = 224/367 (61%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L +S +++ AV D G+ + TPIQ   IP VL   D+ G AQTGTGKTA+F +P+L  
Sbjct: 6   FNELDISNEILKAVDDMGFEETTPIQSNAIPAVLAGKDIVGQAQTGTGKTAAFGIPLL-- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL-LIGGIPFEAQNKKLER 121
            E+  A  + P+ +IL PTRELA QV++  ++  K       L + GG   + Q + L +
Sbjct: 64  -EEMDANKKDPQAIILCPTRELAIQVSEELKRLAKYKKRIYTLPVYGGQSIQRQIRALNK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR++DH  RG L +N I   V+DEAD MLDMGFI  I+ +   +P  RQTL
Sbjct: 123 GVQIVIGTPGRVMDHIRRGTLKLNQINYFVLDEADVMLDMGFIDDIETVLRDIPEDRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT+   ++++S  + +N + ++V     T  +IE  +     +   K   L +LL  
Sbjct: 183 FFSATIPKSIRRLSRKYQKNSQFLKVAHEKLTVPSIEQYYYEL--RRHDKLKALTRLLDL 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  I+FCN +K V  L   L+ +G+   AIHG ++Q  R +++  F+ G I+++VA
Sbjct: 241 NNP-ELAIVFCNTRKMVDELNIKLQARGYLSDAIHGGLNQNQRDRVMGKFRNGIIEILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ D+  VFN+D+P   + Y+HRIGRTGRAG+ GKAF+ V  +DI  +  I+
Sbjct: 300 TDVAARGIDVDDIEAVFNYDLPQDTDYYVHRIGRTGRAGKSGKAFSFVVGKDIYKLRDIQ 359

Query: 362 KLIEKKV 368
           K  + K+
Sbjct: 360 KYTKTKI 366


>gi|315644143|ref|ZP_07897313.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315280518|gb|EFU43807.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 481

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 146/399 (36%), Positives = 231/399 (57%), Gaps = 12/399 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS ++  A+   GY  PT +Q + IP+ L++ D+   +QTG+GKTA++ +P+   
Sbjct: 6   FTDYPLSEEIRRALDSLGYTTPTEVQTEVIPVALEKRDLVVKSQTGSGKTAAYGIPLCEQ 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ LIL PTRELA QV ++    G+   +    L G  PF  Q  +L++ 
Sbjct: 66  VEWNENK---PQALILTPTRELALQVNEDITNIGRFKRIKATPLYGRHPFHMQKAELKQR 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  RG L ++ I  LVIDEAD ML+MGFI  +Q+I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIERGSLSLDRISHLVIDEADEMLNMGFIEQVQSIIQALPRNRVTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT  +++ K++  ++ +P++IE+     T  TI+H  V    + + K A+LQ LL + 
Sbjct: 183 FSATFPEDVAKLAHKYMNHPEQIEIKASGLTTATIDHAQVQ--VKEADKLAVLQNLLITT 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + I+FC  +++V  L  +L   G+    IHG ++Q  R +++  F+ G  + ++A+
Sbjct: 241 NP-DSCIVFCRTQEHVDTLFRALADLGYPCDRIHGGMEQEERFEVMHAFRRGQFRYLIAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG+ G A TLV   D   +  IE 
Sbjct: 300 DVAARGIDISNITHVINYDIPLEKESYVHRTGRTGRAGQTGSAITLVTPRDSGRLADIEA 359

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            I   +  +        P  EK+D  +    RK N  P+
Sbjct: 360 YIGFAIPKMTA------PSEEKVDECREAFERKLNIRPK 392


>gi|307823522|ref|ZP_07653751.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307735507|gb|EFO06355.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 462

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 225/369 (60%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P ++  +   GY   TPIQ +++P +L+  DV   A+TG+GKTA+F + +L+ 
Sbjct: 6   FSSLALKPALLENIESLGYTHLTPIQAESLPHILEGRDVIAQAKTGSGKTAAFGIGLLSK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+    RV+    +++ PTRELA QV     +  +   N+ V  L GG+PF  Q   LE 
Sbjct: 66  LDLNSFRVQ---AMVVCPTRELADQVCKEIRRLARFTQNIKVLTLCGGVPFGPQRASLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ +H  +  L ++N+++LV+DEADRMLDMGF   I ++ S  P  RQTL
Sbjct: 123 GVHVVVGTPGRLQEHLGKRSLRLSNLKVLVLDEADRMLDMGFEEAITDVISYAPTHRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT TD ++++S+ F   P  + + T    ++ IE  F     + SK+   L  LL S
Sbjct: 183 LFSATYTDPIREISQKFQFKPVSVSIETSHHDSD-IEQRFYQV--EKSKRTNALGYLL-S 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ ++FCN K++  ++  SLE  GF+V A+HG+++Q+ R ++L  F   +  ++VA
Sbjct: 239 YYRPESTVVFCNTKRDCQDVASSLENSGFTVQALHGDLEQKDRDQVLVRFSNKSCSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V N+D+P   E Y+HRIGRTGRAG+ G A +L  ++++  + AIE
Sbjct: 299 TDVAARGLDIKDMQAVINYDLPWDPEIYVHRIGRTGRAGKKGLALSLCTEQELNRVKAIE 358

Query: 362 KLIEKKVDW 370
           +       W
Sbjct: 359 EYQNTPAKW 367


>gi|283771250|ref|ZP_06344139.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus H19]
 gi|283459455|gb|EFC06548.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus H19]
          Length = 506

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 150/384 (39%), Positives = 225/384 (58%), Gaps = 15/384 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S   V ++   G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  G+  V+   +LIL PTRELA QVA+   ++ +   + V  + GG+P E Q K L++
Sbjct: 63  KV-VGKQGVQ---SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQT 180
           G  +++ TPGR++DH NR  L  + I  L++DEAD M++MGFI  ++ I   +P   RQT
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +Q + + F+++PK I+      +   IE  +  T  +  +K       L 
Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNFLD 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  IIF   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++V
Sbjct: 237 VHQP-ELAIIFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  I
Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E    +K       +S+L PP  K
Sbjct: 356 EDANGRK-------MSALRPPHRK 372


>gi|307252129|ref|ZP_07534028.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860429|gb|EFM92443.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 596

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 138/351 (39%), Positives = 221/351 (62%), Gaps = 7/351 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+V P+PIQ +TIP +L   DV G+AQTG+GKTA+F LP+L  ++  +   R P+ L++ 
Sbjct: 2   GFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLLAQIDPTK---RHPQMLVMA 58

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVAD  E++ KN   + V  + GG  ++ Q + L++G+ V++ TPGRILDH  
Sbjct: 59  PTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRALKQGSQVVVGTPGRILDHIR 118

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P   QT LFSATM + +++++  F
Sbjct: 119 RGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRITRRF 178

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           +Q+P+ +++     +A  I   +      + K  ALL+ L    +     IIF   K   
Sbjct: 179 MQDPQEVKIQATQRSAPDITQSYWLVNG-FRKNDALLRFL--EVEEFDAAIIFTRTKTGT 235

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
           +++    E+ G+   A++G++ Q++R + L   K G + ++VA+D+AARG+DI  +  V 
Sbjct: 236 IDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAARGIDIERISLVV 295

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           NFD+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  IE L++K +D
Sbjct: 296 NFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKPID 346


>gi|229821387|ref|YP_002882913.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333]
 gi|229567300|gb|ACQ81151.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM
           12333]
          Length = 580

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 146/387 (37%), Positives = 221/387 (57%), Gaps = 18/387 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD G+S  +V A+ D G V P PIQ  T+P+ LQ HD+ G A+TGTGKT  F +P+L  
Sbjct: 49  FADFGVSDAIVTALRDVGIVHPFPIQSLTLPVALQAHDIIGQAKTGTGKTLGFGIPLLER 108

Query: 63  L----EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    E G   V  P   + L++ PTRELA QVA + E   ++    V  L GG  +E Q
Sbjct: 109 VVGPGEDGWDAVEAPGAPQALVVVPTRELAVQVAGDLETAARHRKARVVQLYGGRAYEPQ 168

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG +V++ TPGR++D   +  L ++++  +V+DEAD MLD+GF+P ++ + +  P
Sbjct: 169 VAALGRGTEVVVGTPGRMIDLMRQRVLDLSHVRTVVLDEADEMLDLGFLPDVETLLAATP 228

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234
             R T+LFSATM   +  ++  F+ +P  I  + P+    T++      Y  ++  K  +
Sbjct: 229 PQRHTMLFSATMPGAVVALARRFMSHPTHIRAHDPNDDGATLKAIRKVVYRAHALDKVEM 288

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L +LLQ+ D     I+F   K+    +   L  +GF+  AIHG++ Q +R + L  F+ G
Sbjct: 289 LARLLQA-DGRGLTIVFTRTKRTAAKVADELVDRGFAAAAIHGDLGQGAREQALRAFRHG 347

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+DI DV HV N+  P   + ++HRIGRTGRAG  G A T V  +DI
Sbjct: 348 KVDVLVATDVAARGIDIDDVTHVVNYQCPEDEKTFLHRIGRTGRAGNTGTAVTFVDWDDI 407

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPP 381
                I++ +E         L + NPP
Sbjct: 408 PRWALIDRALE---------LGTPNPP 425


>gi|269104706|ref|ZP_06157402.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161346|gb|EEZ39843.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 647

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 221/369 (59%), Gaps = 7/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L L+  ++ A+   G+V PTPIQ  +IPL+L   D  G AQTGTGKTA+F LP+L 
Sbjct: 7   EFRQLELADTLLSALDKMGFVAPTPIQAASIPLLLTGTDALGKAQTGTGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+  + +   P+ +++ PTRELA QVA   +  G+N   L V  + GG     Q + L+
Sbjct: 67  KLKLSQHK---PQAIVMAPTRELAIQVAAEVKTLGQNIQGLKVLEIYGGASIVDQMRALK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ D   R +L ++ +   V+DEAD ML MGF+  +  I    P T Q 
Sbjct: 124 NGAHIVVGTPGRVKDLITRDRLHLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQR 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++++ + FL+NP RI+V   + T   ++  F        +K   + +LL+
Sbjct: 184 VLFSATMPPIVKEIVDRFLRNPARIDVAGENRTVAKVDQQFWVVKG--VEKDEAMMRLLE 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++DT    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K G I ++V
Sbjct: 242 TEDT-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVEHIKRGVIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  I
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGREGKAILLVRTNQIRMLRTI 360

Query: 361 EKLIEKKVD 369
           E++ + +++
Sbjct: 361 ERVTKSRME 369


>gi|162447374|ref|YP_001620506.1| ATP-dependent RNA helicase, DEAD box containing [Acholeplasma
           laidlawii PG-8A]
 gi|161985481|gb|ABX81130.1| ATP-dependent RNA helicase, superfamily II [Acholeplasma laidlawii
           PG-8A]
          Length = 448

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 148/374 (39%), Positives = 225/374 (60%), Gaps = 7/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L +  ++  A+  +GY  PT IQ + IP++L   D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MKFSELNIIERIQKALTLSGYEAPTAIQEQAIPILLSGQDLLGSAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             + + +   + PR    LIL PTRELA Q+ +N + Y K  N+    + GG+  + Q +
Sbjct: 61  QKIYETKEH-KAPRKVQALILTPTRELALQIHENVKIYAKYLNIISTTIYGGVSQKRQEE 119

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+RG DV+I TPGR+LD  N+  + + ++  LV+DEAD+MLDMGFI  + +I    P  
Sbjct: 120 ALKRGVDVVIATPGRLLDLMNQKIISLQDVRYLVLDEADQMLDMGFIKDVTSIVDKTPKK 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSATM  +++ +S+  L NP+RI V   + T + I           + K  LL  
Sbjct: 180 RQTMLFSATMPKQIEVLSKQILVNPERIAVTPVTQTLDAITQSVY--MVNKANKTLLLID 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ + + MK+ ++F   K     L  +L   G     IHG+  Q +R + L+NFK+G  +
Sbjct: 238 LIYTLN-MKSVLVFTKTKHGANKLVKNLMNLGIESEPIHGSKSQAARERALANFKKGKTK 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  + +V NF++P   E YIHRIGRTGRAG  G A +LV   + K +
Sbjct: 297 ILVATDIAARGIDIEALDYVINFELPEVPETYIHRIGRTGRAGLSGMALSLVDPSEQKLL 356

Query: 358 DAIEKLIEKKVDWL 371
             +EK I  K++ +
Sbjct: 357 TQVEKHINSKIEAV 370


>gi|308050678|ref|YP_003914244.1| ATP-dependent RNA helicase CsdA [Ferrimonas balearica DSM 9799]
 gi|307632868|gb|ADN77170.1| ATP-dependent RNA helicase CsdA [Ferrimonas balearica DSM 9799]
          Length = 649

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 219/363 (60%), Gaps = 7/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F+ LGL   ++ A+   G+  PTPIQ + IP +L  HD+ G A TGTGKTA+F LP L
Sbjct: 5   VEFSSLGLPESLLSALSAMGFTSPTPIQAQAIPFMLDGHDILGEAATGTGKTAAFGLPAL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             ++    R R  + L+L PTRELA QVA   E++  N   + V  L GG P+  Q + L
Sbjct: 65  AGID---PRQRAAQMLVLAPTRELAIQVATALEEFAVNMKGMRVTTLYGGQPYGPQLRDL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG  V++ TPGR++DH  RG + +++I+  V+DEAD ML+MGF+  I+ I   +P   Q
Sbjct: 122 ERGTQVVVATPGRLMDHIRRGSIELDSIQCCVLDEADEMLNMGFLEDIEWILEHLPDQTQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM +++++++E FL++PK +++ +  +    I     A       K   L++L 
Sbjct: 182 MALFSATMPNQIRRIAERFLKDPKHVKIASDRTQKANIVQK--AWKVSGLNKLTALERLS 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++ D     I+F   + + + L + L   GF   A++G++ Q+ R   ++   +G I ++
Sbjct: 240 ETLD-YDAMIVFVRTRNDTMELANHLNNMGFKAAALNGDMSQQQREHTVAQLHKGKINIL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+ ARGLD+P + HV NFD+P  +E+Y+HRIGRTGRAGR G+A       +++ +  
Sbjct: 299 IATDVVARGLDVPRITHVLNFDLPMDSESYVHRIGRTGRAGRSGEAILFARPRELRQLRF 358

Query: 360 IEK 362
            E+
Sbjct: 359 YER 361


>gi|307249783|ref|ZP_07531761.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858198|gb|EFM90276.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 596

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 138/351 (39%), Positives = 221/351 (62%), Gaps = 7/351 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+V P+PIQ +TIP +L   DV G+AQTG+GKTA+F LP+L  ++  +   R P+ L++ 
Sbjct: 2   GFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLLAQIDPTK---RHPQMLVMA 58

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVAD  E++ KN   + V  + GG  ++ Q + L++G+ V++ TPGRILDH  
Sbjct: 59  PTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRALKQGSQVVVGTPGRILDHIR 118

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P   QT LFSATM + +++++  F
Sbjct: 119 RGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRITRRF 178

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           +Q+P+ +++     +A  I   +      + K  ALL+ L    +     IIF   K   
Sbjct: 179 MQDPQEVKIQATQRSAPDITQSYWLVNG-FRKNDALLRFL--EVEEFDAAIIFTRTKTGT 235

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
           +++    E+ G+   A++G++ Q++R + L   K G + ++VA+D+AARG+DI  +  V 
Sbjct: 236 IDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAARGIDIERISLVV 295

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           NFD+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  IE L++K +D
Sbjct: 296 NFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKPID 346


>gi|170696489|ref|ZP_02887614.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170138592|gb|EDT06795.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 537

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 226/389 (58%), Gaps = 33/389 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA LGLS  VV A+  AGY  PTP+Q + +P  +   D+   + TG+GKTA+F+LP +  
Sbjct: 52  FASLGLSADVVSALTAAGYQNPTPVQQRAVPAAIAGRDLMVSSPTGSGKTAAFMLPAIER 111

Query: 61  -TILEKGRAR-------------------VRMPRTLILEPTRELAAQVADNFEKYGKNY- 99
            + L+K +A                    V  P  L+L PTRELA QV      YGK+  
Sbjct: 112 FSQLQKAQASQPREPRPADGARNTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLK 171

Query: 100 NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159
            L    ++GG+ +  Q   L +  ++L+ TPGR++DH  RG++ ++ ++ILV+DEADRML
Sbjct: 172 RLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRML 231

Query: 160 DMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV----NTPSSTAE 215
           DMGFI  I+ I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+       ++ A+
Sbjct: 232 DMGFIEDIETIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRLEQRTNIAQ 291

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
           T+ +           K  LL  LL+ +  +   I+F   K +   L   L   GF   A+
Sbjct: 292 TVHYV-----DDRDHKDRLLDHLLRDEG-LDQAIVFTATKMDADQLAGRLADAGFESAAL 345

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGR
Sbjct: 346 HGDLPQGARNRTIKALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGR 405

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           TGRAGR G A +LV   +   +  IE+ +
Sbjct: 406 TGRAGRSGIAVSLVHHAEQGALKRIERFV 434


>gi|242310089|ref|ZP_04809244.1| ATP-dependent RNA helicase [Helicobacter pullorum MIT 98-5489]
 gi|239523386|gb|EEQ63252.1| ATP-dependent RNA helicase [Helicobacter pullorum MIT 98-5489]
          Length = 504

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 147/384 (38%), Positives = 224/384 (58%), Gaps = 9/384 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G   KV+  + + G+ +P+PIQ + IP++L   DV   AQTGTGKTA+F LP++  
Sbjct: 14  FGIFGFKKKVLDGIREVGFREPSPIQKEVIPIILDGLDVIAQAQTGTGKTAAFALPLVNG 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   +       L++ PTREL  Q+ D   K GK   +    L GG P + Q + L + 
Sbjct: 74  LKHNGS----IEALVIAPTRELVMQIGDEIFKLGKYNKVRTVSLFGGQPIQRQVELLAKK 129

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++I TPGR+LDH   G+L     +I+V+DE+D MLDMGF+  I+ I S +P  RQTLL
Sbjct: 130 PQIVIATPGRLLDHLRNGRLKKFAPQIVVLDESDEMLDMGFLDDIEEIFSYLPSERQTLL 189

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   ++ +++  L NPK +++    +T + I   +     Q  +   +  +L+ S+
Sbjct: 190 FSATMPTPIKHLAQKILHNPKLVKITPSDTTNQDISQRYYIINEQEREDAIV--RLIDSE 247

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  IIF   KK    LC  L  +G+   A+HG+++QR R K +  FK+ ++ ++VA+
Sbjct: 248 MPTK-AIIFTRMKKEADLLCERLVDRGYKAGALHGDMEQRERQKSIKAFKDSSVNILVAT 306

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HVFNF +P   E+Y+HRIGRTGRAG+ G A TL    + K +  I++
Sbjct: 307 DIAARGLDISGVSHVFNFHIPLNPESYVHRIGRTGRAGKKGVAITLATPLEFKELRRIKE 366

Query: 363 LIEKKVDWLNGDLSSLNPPLEKID 386
             + K++    ++ +L   L+K D
Sbjct: 367 NTKAKIELY--EIPNLQDTLDKKD 388


>gi|145632474|ref|ZP_01788208.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655]
 gi|144986669|gb|EDJ93221.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655]
          Length = 613

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 228/369 (61%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L  
Sbjct: 7   FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQ 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121
           ++      + P+ L++ PTRELA QVAD  E + K    T +  L GG  ++ Q + L++
Sbjct: 67  IDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRILDH  R  L ++ +  +V+DEAD ML MGFI  ++ + + +P   QT 
Sbjct: 124 GAQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240
           LFSATM + ++++++ F+ NP+ +++   +  A  I+  C+   Y    +K   L + L+
Sbjct: 184 LFSATMPEPIRRITKRFMNNPQEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++V
Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 361 EKLIEKKVD 369
           E L++K ++
Sbjct: 360 EHLMKKGIN 368


>gi|331018940|gb|EGH98996.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 442

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 220/371 (59%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               +E  +      R L+L PTRELA QV ++  +Y +N  L+     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAENLPLSTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD + +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLYRQKAIRFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A +++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++        ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG+ G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGQTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVD 369
           AIE L  + ++
Sbjct: 358 AIEVLTRQTLE 368


>gi|209809235|ref|YP_002264773.1| cold-shock DEAD box protein A (ATP-independent RNA helicase)
           [Aliivibrio salmonicida LFI1238]
 gi|208010797|emb|CAQ81193.1| cold-shock DEAD box protein A (ATP-independent RNA helicase)
           [Aliivibrio salmonicida LFI1238]
          Length = 641

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 142/363 (39%), Positives = 217/363 (59%), Gaps = 7/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L L   ++ A+ + G+V PTPIQ ++IPL+L   D  G AQTGTGKTA+F LP+L 
Sbjct: 7   EFRQLALEETLLSALDEMGFVAPTPIQAESIPLLLAGRDALGKAQTGTGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
              K   +   P+ +I+ PTRELA QVA   +  G+N   L V  + GG     Q + L 
Sbjct: 67  ---KINLKQHNPQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMRALS 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +++ TPGR+ D  NR +L +  +   ++DEAD ML MGF+  +  I    P T Q 
Sbjct: 124 RGAHIVVGTPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPETAQR 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++ + + +L++P R++V   ++T E +   F     +  +K   + +LL+
Sbjct: 184 ILFSATMPPMVKTIVDRYLRDPARVDVAGTNNTVEQVTQNF--WIVKGVEKDEAMSRLLE 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++ +   I+F   +++   L   L  +GF   A+HG+I Q  R + + + K G I ++V
Sbjct: 242 TEE-IDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKRGVIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  I
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360

Query: 361 EKL 363
           E++
Sbjct: 361 ERV 363


>gi|57867605|ref|YP_189253.1| DEAD-box ATP dependent DNA helicase [Staphylococcus epidermidis
           RP62A]
 gi|293366046|ref|ZP_06612734.1| ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81673916|sp|Q5HME0|Y1688_STAEQ RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SERP1688
 gi|57638263|gb|AAW55051.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           epidermidis RP62A]
 gi|291319769|gb|EFE60127.1| ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329726161|gb|EGG62633.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU144]
 gi|329734135|gb|EGG70453.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU045]
          Length = 509

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 156/412 (37%), Positives = 233/412 (56%), Gaps = 25/412 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S K V  +   G+ +PTPIQ  +IP  L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  G+  V+   +LIL PTRELA QVA+   ++ K   + V  + GG+P E Q K L+R
Sbjct: 63  KV-VGQQGVQ---SLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKR 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180
           G  +++ TPGR++DH NR  L    I  L++DEAD M++MGFI  ++ I   +P   RQT
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +Q++ + F++ PK I+      +   I+  +  T  +  +K       L 
Sbjct: 179 MLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYY--TIVKELEKFDTFTNFLD 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++V
Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  I
Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK----------IDIAQHNHARKNNPIPQK 402
           E       D  N  + +L PP  K           D  Q+  +R+N P  Q+
Sbjct: 356 E-------DVNNRRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPRLQR 400


>gi|331268829|ref|YP_004395321.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum BKT015925]
 gi|329125379|gb|AEB75324.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum BKT015925]
          Length = 476

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/364 (35%), Positives = 226/364 (62%), Gaps = 6/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +  LS +++  +   GY  PT +Q K IP+ L+  D+   +QTG+GKTASF +P  
Sbjct: 1   MNFKEFNLSNEILKTIQMLGYKSPTEVQEKVIPIALKDKDIIVKSQTGSGKTASFGIP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + EK +   + P+ LIL PTRELA Q+ ++    G+   +    + G  P   Q  +L+
Sbjct: 59  -VCEKVKLENKKPQALILTPTRELAVQIKEDISNIGRFKKIKCVAVYGKEPVSIQKNQLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR  DH  +G + ++++  L+IDEAD+ML+MGFI  ++++   +P  R T
Sbjct: 118 QRVHIVVGTPGRTFDHIEKGNMELSDVRYLIIDEADKMLNMGFIDQVEDVIKSLPKDRVT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ + ++K+   ++ +P++IE++  + T + IE  +     +  +K +LL +++ 
Sbjct: 178 MLFSATLEERIEKLCVKYMNDPEKIEIDKKNVTTDIIEQEYYD--VESDRKFSLLNKIIY 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + IIFCN K  V ++   ++ +GF   A+HG ++Q+ R++++  FK G    +V
Sbjct: 236 TERP-DSCIIFCNTKAEVGSIAVKMKNKGFDTKALHGGMEQKDRLEVIQEFKRGRFPFLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++ HV N++VP   E+Y+HRIGRTGRAG  GK+ T V + + +   +I
Sbjct: 295 ATDVAARGIDIEEITHVINYEVPAEKESYVHRIGRTGRAGHKGKSITFVCEYEDRKFKSI 354

Query: 361 EKLI 364
           E+ I
Sbjct: 355 EEYI 358


>gi|320095784|ref|ZP_08027429.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319977291|gb|EFW08989.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 575

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 216/370 (58%), Gaps = 9/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD G++  +V A+ D G   P PIQ  T+   L RHD+ G A+TGTGKT  F +P+L  
Sbjct: 80  FADFGVTDPIVDALEDQGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLGFGIPVLED 139

Query: 63  L----EKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    E G   +     P+ LI+ PTREL+ QVA +     K  +  +  + GG+ FE Q
Sbjct: 140 VIAPDEPGFDDLLNPNSPQALIVLPTRELSKQVASDLRAAAKYLSTRIVEIYGGVAFEPQ 199

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L++GADV++ TPGR++D   +G L ++ +E +V+DEAD MLD+GF+P ++ + S VP
Sbjct: 200 ISALKKGADVVVGTPGRLIDLLRQGHLHLSGVETVVLDEADEMLDLGFLPDVETLLSRVP 259

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234
             R T+LFSATM   +  ++  F+++P  I    P    +T+       Y  +S  K  +
Sbjct: 260 SHRHTMLFSATMPGPVVALARKFMEHPTHIRAQDPDDQHQTVNTVKQVVYRVHSLNKVEV 319

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L ++LQS+   +  +IFC  K+    L   L  +GF+V ++HG++ Q +R + L  F+ G
Sbjct: 320 LARILQSKGRGR-AVIFCRTKRTAARLGEDLAARGFAVGSLHGDLGQGAREQALRAFRNG 378

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+  P   + YIHRIGRTGRAG  G A T V  +D 
Sbjct: 379 KVDVLVATDVAARGIDVDDVTHVVNYQCPEDEKIYIHRIGRTGRAGNSGTAVTFVDWDDT 438

Query: 355 KHIDAIEKLI 364
                I K +
Sbjct: 439 PRWSLISKAL 448


>gi|304390841|ref|ZP_07372793.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315656383|ref|ZP_07909272.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|304325724|gb|EFL92970.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315492942|gb|EFU82544.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 525

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 218/371 (58%), Gaps = 9/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  + P++V A+ D G + P PIQ  T+P+ L R D+ G A+TGTGKT  F +P+L  
Sbjct: 28  FADFDVEPEIVAALRDQGIIHPFPIQALTLPVALNRQDIIGQAKTGTGKTLGFAIPILHD 87

Query: 63  L----EKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    ++G   +     P+ L++ PTRELA QVA        +    +  + GG+ F++Q
Sbjct: 88  IIGPGDEGWDEIPDSGFPQALVILPTRELAKQVAAEIRAAATHRVARIIEIYGGVGFDSQ 147

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L +G +V++ TPGR++D  N+G L +  I  LV+DEAD MLDMGF+P ++ + S +P
Sbjct: 148 VEALRKGVEVVVGTPGRLIDLMNQGTLKLGRIRTLVMDEADEMLDMGFLPDVEKLISQIP 207

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234
             R T+LFSATM   +  ++  ++  P  I    P+ +++T+       Y  +S  K  +
Sbjct: 208 PRRHTMLFSATMPGPVVALARRYMYQPTHIRATDPTDSSQTVRQVKQVVYRVHSLNKTEV 267

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + ++LQ+++     IIF   K+    L   L ++GF+  AIHG++ Q +R + L  F+ G
Sbjct: 268 IARILQARNRGLT-IIFTRTKRTCQRLSDELAERGFATGAIHGDLGQNARERALRAFRHG 326

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N++ P   + YIHRIGRT RAG  G A T +  ED+
Sbjct: 327 KVDVLVATDVAARGIDVDDVTHVINYECPEDDKTYIHRIGRTARAGNKGSAITFIDWEDL 386

Query: 355 KHIDAIEKLIE 365
                I + ++
Sbjct: 387 TRWRVINRTLD 397


>gi|296271676|ref|YP_003654307.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296095851|gb|ADG91801.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 488

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 146/369 (39%), Positives = 228/369 (61%), Gaps = 9/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ DAG+ +P+PIQ   IP+VL   D+ G AQTGTGKTA+F LPM+
Sbjct: 1   MTFKDFNFKENLQRAIEDAGFKEPSPIQQDAIPVVLSGKDMVGQAQTGTGKTAAFGLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ++  G + V     +++ PTRELA QV+D   ++GK+  +  A + GG  +  Q + ++
Sbjct: 61  NMM-NGNSGVE---AVVIVPTRELAMQVSDELFRFGKSSGMNTATVYGGQSYNMQLRNID 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R A +++ TPGR++D   +GK +      +V+DEAD MLDMGF+  I+ I + +P  RQT
Sbjct: 117 R-ASIIVATPGRLIDLL-KGKKIDIKPSFVVLDEADEMLDMGFLDDIKEIFTYLPKERQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++N L+ P+ I V     T   I   F     +Y +  AL++ L  
Sbjct: 175 LLFSATMPPAIKKLAQNILKEPEFITVTKAEMTNSKITQLFYVV-DEYERDDALIR-LFD 232

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  K+ IIFC  KK V  L   L  QG     +HG+++QR R +++ +FK+G + +++
Sbjct: 233 FKNPEKS-IIFCRTKKEVDRLSTYLVSQGHMAKGLHGDMEQRQREEVIRSFKKGALDVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HVFN+ +P  +E+Y+HRIGRTGRAG+ G A ++V   + + I  I
Sbjct: 292 ATDVAARGLDVNDVSHVFNYHLPFDSESYVHRIGRTGRAGKEGVAISIVTPHEFRMIQKI 351

Query: 361 EKLIEKKVD 369
           + +   K++
Sbjct: 352 QHVTGGKME 360


>gi|153834391|ref|ZP_01987058.1| ATP-independent RNA helicase DbpA [Vibrio harveyi HY01]
 gi|148869239|gb|EDL68261.1| ATP-independent RNA helicase DbpA [Vibrio harveyi HY01]
          Length = 459

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 145/367 (39%), Positives = 224/367 (61%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+P ++  +    Y   TPIQ  ++P +L + DV G  +TG+GKTA+F L +L+ 
Sbjct: 6   FDQVGLNPALLETLESLNYTHMTPIQALSLPAILNQRDVIGQGKTGSGKTAAFGLGVLSN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA      G+  +N+ V  L GG+P   Q   LE 
Sbjct: 66  LNVKRFRVQ---SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH  +G++ +  +  LV+DEADRML+MGF   +  I    P  RQTL
Sbjct: 123 GAHILVGTPGRILDHLEKGRINLEELNTLVLDEADRMLEMGFQDALDAIIDAAPKQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  ++++++++  +Q+P+ I+V +   T+ +I   F       ++  AL   LL  
Sbjct: 183 LFSATFPEKIEQIAQRIMQSPEMIKVESTHDTS-SIAQYFYNVEGSEARDEALANLLLTH 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ ++FCN KK V N+   L  +GFSV  +HG+++QR R + L  F   ++ ++VA
Sbjct: 242 QP--ESAVVFCNTKKEVQNVADELHHKGFSVVDLHGDLEQRERDQALVQFANKSVSILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+   ++D   +  IE
Sbjct: 300 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIE 359

Query: 362 KLIEKKV 368
           + ++  V
Sbjct: 360 EYLDMDV 366


>gi|218780159|ref|YP_002431477.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761543|gb|ACL04009.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 489

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 149/409 (36%), Positives = 240/409 (58%), Gaps = 21/409 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  L   ++  + DAG+ + TPIQ + +P+ L   D+ G AQTGTGKTA+F++PM + 
Sbjct: 25  FADFDLPETLLEGLKDAGFERCTPIQAQVLPVALSGKDIAGQAQTGTGKTAAFLVPMFSK 84

Query: 63  LEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L     R + +P  LI+ PTRELA Q+ +  E  G + + T+A  IGG+ +  Q   L++
Sbjct: 85  LLGLENRSKTLPSALIVAPTRELALQIYEEAEVLGGHTDFTIAQAIGGMDYRKQMDILKQ 144

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TRQ 179
           GAD+LI TPGRI+D++ +G    + I+ +VIDEADR+LD+GF   ++ I   +P    RQ
Sbjct: 145 GADILIGTPGRIIDYYKQGIFKTHAIKSVVIDEADRLLDLGFAKDMRYILRKMPHYEKRQ 204

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           ++LFSAT++  + +++ +++  P+ I V     T + I+      +    +K  LL  + 
Sbjct: 205 SMLFSATLSYRVLELTYDYMNLPEFISVTPEEVTVKGIDQILY--HVGQDQKLPLLLGVF 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +++D  +  ++F N K  V  + H L   GF    I G++ QR R++++  FK G + ++
Sbjct: 263 KNEDWTR-ALVFVNTKSGVEFVAHKLRGNGFPAGGITGDLPQRKRLQLMERFKNGELSIL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RG+ + DV HV N+D+P   ENY+HRIGRT RAG+ GKA +L  +  + H++ 
Sbjct: 322 VATDVASRGIHVEDVSHVINYDLPQDPENYVHRIGRTARAGKTGKAISLACEHYVFHLEP 381

Query: 360 IEKLI--EKKVDWLNGDLSSLNPPLEKI---DIAQHNHARKNNPIPQKS 403
           +E++I     V+W          P E+    D A    ARK  P P + 
Sbjct: 382 MEEMIGLSLPVEW----------PEEEYFQEDKAGPMPARKRGPKPDQG 420


>gi|256827018|ref|YP_003150977.1| DNA/RNA helicase, superfamily II [Cryptobacterium curtum DSM 15641]
 gi|256583161|gb|ACU94295.1| DNA/RNA helicase, superfamily II [Cryptobacterium curtum DSM 15641]
          Length = 551

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 153/367 (41%), Positives = 211/367 (57%), Gaps = 6/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS K + AV   GY  PTP+Q + IP VL   DV   A+TGTGKTA+F LP +  
Sbjct: 5   FHDLGLSEKALAAVDLLGYTDPTPVQEQAIPAVLAGRDVIAAAKTGTGKTAAFSLPTMDR 64

Query: 63  LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G AR  + P  LI+ PTRELA Q+        K     V  ++GG+ +  Q   L R
Sbjct: 65  L--GHARHGQGPLLLIVTPTRELALQIESVCRTIAKRSGHRVTCVVGGVSYNPQIDSLRR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR++D  N+    +N +E LV+DEADRMLDMGF+P ++ I +  P  RQTL
Sbjct: 123 GTDVLIATPGRLIDLMNQDAAHLNQVETLVLDEADRMLDMGFLPDMRRIVAACPTQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++    + L NP  +E+     TA+TIE   +     +  K  LL  LL  
Sbjct: 183 LFSATIDSAIEDNMAHLLNNPVFVEIAHRGETADTIEQYRIPV--DHRHKNDLLIALLNE 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  I+F   +  V      L K GF+V  IH +  Q  R + +   + G   ++VA
Sbjct: 241 RGGTRI-IVFARTRHRVDTCVRKLRKAGFAVEPIHSDRSQNQRKRAIEALEAGKCDILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+DIP+V +V N D+P++ E+Y+HRIGRTGRAG  G A + V  E+   +  I+
Sbjct: 300 TDVLARGIDIPNVNYVVNLDMPDQVEDYVHRIGRTGRAGEAGCAISFVTPENKAILRDIQ 359

Query: 362 KLIEKKV 368
           KLI K +
Sbjct: 360 KLIGKDI 366


>gi|226365826|ref|YP_002783609.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
 gi|226244316|dbj|BAH54664.1| putative ATP-dependent RNA helicase [Rhodococcus opacus B4]
          Length = 534

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 151/375 (40%), Positives = 220/375 (58%), Gaps = 17/375 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+  +VV A+ + G  +   IQ  T+PL L   D+ G A+TG GKT  F +P+L  
Sbjct: 40  FAELGVRDEVVRALDEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLHR 99

Query: 63  LEKGRARVR----MPRTLILEPTRELAAQVADNFE------KYGKNYNLTVALLIGGIPF 112
           +  G          PR L++ PTREL  QV  + E      K  KN  L V  + GG P+
Sbjct: 100 ISSGTTGTAALDGTPRALVIVPTRELCIQVTKDLEGAAKYLKGEKNKPLEVLAIYGGRPY 159

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E Q   L++GADV++ TPGR+LD  N+G L++  +E+LV+DEAD MLD+GF+P I+ I +
Sbjct: 160 ETQIATLQKGADVVVGTPGRLLDLANQGHLILGKVEVLVLDEADEMLDLGFLPDIERILN 219

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA---ETIEHCFVATYAQYS 229
           +VP  RQT+LFSATM   +  ++  FL  P  I       +A    T +H +    A   
Sbjct: 220 MVPDKRQTMLFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHIY---RAHAL 276

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            K  ++ ++LQ+ D     +IF   K+    +   L ++GF+V ++HG+++Q +R K L 
Sbjct: 277 DKAEMVARVLQA-DGRGATMIFTRTKRTAQKVSDELAERGFAVGSVHGDLNQVAREKALK 335

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+ G I ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G A TLV
Sbjct: 336 AFRSGKIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAVTLV 395

Query: 350 AKEDIKHIDAIEKLI 364
             +DI     I+K +
Sbjct: 396 DWDDIPRWQLIDKAL 410


>gi|167840691|ref|ZP_02467375.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis MSMB43]
          Length = 458

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 152/394 (38%), Positives = 223/394 (56%), Gaps = 14/394 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L
Sbjct: 1   MPFSTLPLTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
             L+  R  V+    L+L PTRELA QVA    +  +   N+ V  L GG P   Q + L
Sbjct: 61  ARLDARRFDVQ---ALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH +RG L +  +  LV+DEADRMLDMGF   I  +    P  RQ
Sbjct: 118 EHGAHIIVGTPGRIMDHLDRGTLTLGALNTLVLDEADRMLDMGFFDDIAKVARQCPPARQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  D + K+S+ FL+NPK ++++     ++  +  +  T  +      LL    
Sbjct: 178 TLLFSATYPDGIAKLSQQFLRNPKEVKLDERHDDSKIRQRFYEVTEDERLHAVGLLLNHY 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   T    I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++
Sbjct: 238 RPVST----IAFCNTKQQCRDLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  +  
Sbjct: 294 VATDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGG 353

Query: 360 IEKLIEKKVDW-----LNGDLSS-LNPPLEKIDI 387
           IE+  ++ V+W     L  D +  L PP+E + I
Sbjct: 354 IEQAQKRDVEWHPLAELKADRNEPLLPPMETLQI 387


>gi|251812202|ref|ZP_04826675.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060]
 gi|251804299|gb|EES56956.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060]
          Length = 528

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 156/412 (37%), Positives = 233/412 (56%), Gaps = 25/412 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S K V  +   G+ +PTPIQ  +IP  L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 22  NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 81

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  G+  V+   +LIL PTRELA QVA+   ++ K   + V  + GG+P E Q K L+R
Sbjct: 82  KV-VGQQGVQ---SLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKR 137

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180
           G  +++ TPGR++DH NR  L    I  L++DEAD M++MGFI  ++ I   +P   RQT
Sbjct: 138 GPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 197

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +Q++ + F++ PK I+      +   I+  +  T  +  +K       L 
Sbjct: 198 MLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYY--TIVKELEKFDTFTNFLD 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++V
Sbjct: 256 VHQP-ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILV 314

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  I
Sbjct: 315 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 374

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK----------IDIAQHNHARKNNPIPQK 402
           E       D  N  + +L PP  K           D  Q+  +R+N P  Q+
Sbjct: 375 E-------DVNNRRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPRLQR 419


>gi|205375157|ref|ZP_03227948.1| DEAD-box ATP dependent DNA helicase [Bacillus coahuilensis m4-4]
          Length = 398

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 146/369 (39%), Positives = 226/369 (61%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  K   A+   G  +PTPIQ + IPL+++  DV   A+TG+GKT +F+LPML  
Sbjct: 4   FNQLGLHIKSERALEQQGITEPTPIQTEVIPLMVEGRDVIAQAKTGSGKTLAFILPMLEK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKKLE 120
           ++  +  V+    LI+ PTRELA QV D  +K  +     + V  + GG   E Q  KLE
Sbjct: 64  VDLEKIAVQ---GLIVAPTRELAIQVTDELKKLVELEFPEVNVLAVYGGQDVEKQLHKLE 120

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R   +++ TPGR+LDH  RG + ++ +++L++DEAD+ML +GF+P ++ I    P TRQ
Sbjct: 121 TRNIHIVVATPGRLLDHMRRGTIDLSELDMLILDEADQMLHIGFLPEVEQIIEATPPTRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT++ +++ +++ + Q P  ++V       E IE  FV       K  AL++ + 
Sbjct: 181 TALFSATISKDVRTLAKRYQQQPYTVQVKDKERLVEEIEQ-FVVETTDRKKLQALVEVIK 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++Q  M  GIIFC   + V  L   L+ +GF V  +HG++ Q  R  ++  F++  IQL+
Sbjct: 240 ETQPFM--GIIFCRTIRRVSKLHMELKAKGFLVDELHGDLSQAKRENVMKRFRDAKIQLL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  V HV+N+D+P   E+YIHRIGRTGRAG  G A T  A +D + + +
Sbjct: 298 IATDVAARGLDVEGVTHVYNYDIPQDVESYIHRIGRTGRAGETGMAITFSALKDKQALQS 357

Query: 360 IEKLIEKKV 368
           +E+ I++ +
Sbjct: 358 LEEGIKRSI 366


>gi|323526518|ref|YP_004228671.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323383520|gb|ADX55611.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
          Length = 536

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 148/388 (38%), Positives = 222/388 (57%), Gaps = 32/388 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLS  VV A+  AGY  PTP+Q + +P  +   D+   + TG+GKTA+F+LP +  
Sbjct: 49  FASLGLSADVVSALTAAGYQNPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 108

Query: 63  L-----------------EKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNY-N 100
                             + GR R    V  P  L+L PTRELA QV      YGK+   
Sbjct: 109 FAQLQKAQASQPREPRPADGGRGRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKR 168

Query: 101 LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160
           L    ++GG+ +  Q   L +  ++L+ TPGR++DH  RG++ M+ ++ILV+DEADRMLD
Sbjct: 169 LRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDMSQLQILVLDEADRMLD 228

Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV----NTPSSTAET 216
           MGFI  I  I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+       ++ A+T
Sbjct: 229 MGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRTNIAQT 288

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
           + +           K  LL  LL+    +   I+F   K +   L   L   GF   A+H
Sbjct: 289 VHYV-----DDRDHKDRLLDHLLRDAG-LDQAIVFTATKMDADQLAGRLADAGFESAALH 342

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRT
Sbjct: 343 GDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRT 402

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           GRAGR G A +LV   +   +  IE+ +
Sbjct: 403 GRAGRSGIAVSLVHHAEQGALKRIERFV 430


>gi|297807481|ref|XP_002871624.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317461|gb|EFH47883.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 713

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 142/354 (40%), Positives = 218/354 (61%), Gaps = 14/354 (3%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-PRTLI 77
           AG+  P+PIQ ++ P+ +Q  D+  IA+TG+GKT  +++P    L++     RM P  L+
Sbjct: 247 AGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILV 306

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           L PTRELA Q+     K+GK+  ++ A L GG P   Q K++ERG D+++ TPGR+ D  
Sbjct: 307 LSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDIL 366

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
              ++ ++ +  LV+DEADRMLDMGF P I+ I + VP  RQTL+++AT   E++K++ +
Sbjct: 367 EMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAAD 426

Query: 198 FLQNPKRI------EVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
            L NP ++      E+    S  +TIE   +A   ++S+    L+Q+L+SQ+     IIF
Sbjct: 427 LLVNPAQVNIGNVDELVANKSITQTIE--VLAPMEKHSR----LEQILRSQEPGSKIIIF 480

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           C+ K+    L  +L +  F   AIHG+  Q  R  +L+ F+ G   ++VA+D+AARGLD+
Sbjct: 481 CSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDV 539

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
            D+  V N+D PN  E+Y+HRIGRTGRAG  G A+T    +D KH   + K++E
Sbjct: 540 KDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILE 593


>gi|329123747|ref|ZP_08252307.1| ATP-dependent RNA helicase DeaD [Haemophilus aegyptius ATCC 11116]
 gi|327469946|gb|EGF15411.1| ATP-dependent RNA helicase DeaD [Haemophilus aegyptius ATCC 11116]
          Length = 613

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 143/369 (38%), Positives = 229/369 (62%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L  
Sbjct: 7   FNNLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLLAQ 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121
           ++      + P+ L++ PTRELA QVAD  E + K    T +  L GG  ++ Q + L++
Sbjct: 67  IDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   QT 
Sbjct: 124 GAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240
           LFSATM + ++++++ F+ +P+ +++   +  A  I+  C+   Y    +K   L + L+
Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++V
Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 361 EKLIEKKVD 369
           E L++K ++
Sbjct: 360 EHLMKKGIN 368


>gi|319790474|ref|YP_004152107.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
           HB-1]
 gi|317114976|gb|ADU97466.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
           HB-1]
          Length = 417

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/400 (37%), Positives = 243/400 (60%), Gaps = 22/400 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+   L  ++  ++ + G+V+PTPIQ + IPL L+ HD+ G AQTGTGKTA+F +P++
Sbjct: 1   MEFSFSQLDERIQKSLEEMGFVEPTPIQKEAIPLALEGHDLVGQAQTGTGKTAAFGIPLV 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + +     R R  + ++L PTRELA QVA      GKN  ++   + GG+  E Q   L+
Sbjct: 61  SGIS---PRERGVKAIVLTPTRELAIQVAHELSLIGKNKGVSAFPIYGGVSIERQINALK 117

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           RG   +++ TPGR+ D  NRG L ++ +   V+DEAD+MLDMGFI  I+ I S  P  +Q
Sbjct: 118 RGRHQIIVGTPGRVKDLINRGVLRLDRVRYAVLDEADQMLDMGFIEDIEEILSKTPKEKQ 177

Query: 180 TLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           TLLFSATM  E++++   +L+ + K ++V     T +  +   +    +   K   L++L
Sbjct: 178 TLLFSATMPYEIRRLIGRYLKPDYKNVKVGKQLITPKVKQRIILV---RSEDKIKALEKL 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+  + +   I+F   K++  ++   L+++G +  AIHG++ QR R  ++  F+EG +++
Sbjct: 235 LKEHEGVST-IVFVKTKRDAADIEKELQRRGINARAIHGDLSQRQREFVMRAFREGKVKV 293

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI DVG V N+++P   E+Y+HRIGRTGRAGR G A +LVA+ + + + 
Sbjct: 294 LVATDVAARGIDIKDVGLVINYELPENPESYVHRIGRTGRAGREGLAISLVAEPEKRRLY 353

Query: 359 AIEKL-------------IEKKVDWLNGDLSSLNPPLEKI 385
            I+ L              E K + L  D +SL P ++++
Sbjct: 354 RIKGLKGVRPERFRVNTVKELKKELLEADANSLPPYVKRL 393


>gi|68248840|ref|YP_247952.1| cold-shock DEAD-box protein A-like protein [Haemophilus influenzae
           86-028NP]
 gi|68057039|gb|AAX87292.1| Cold-shock DEAD-box protein A homolog [Haemophilus influenzae
           86-028NP]
          Length = 613

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 143/369 (38%), Positives = 230/369 (62%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L  
Sbjct: 7   FNDLGLPEFILKAVSDLGFETPSPIQQACIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQ 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121
           ++      + P+ L++ PTRELA QVAD  E++ K  + T +  L GG  ++ Q + L++
Sbjct: 67  IDPSE---KHPQMLVMAPTRELAIQVADACEQFVKYAHGTRIVTLYGGQRYDIQLRALKQ 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRILDH  R  L ++ +  +V+DEAD ML MGFI  ++ + + +P   QT 
Sbjct: 124 GAQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240
           LFSATM + ++++++ F+ +P+ +++   +  A  I+  C+   Y    +K   L + L+
Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++V
Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 361 EKLIEKKVD 369
           E L++K ++
Sbjct: 360 EHLMKKGIN 368


>gi|282876512|ref|ZP_06285378.1| putative ATP-dependent RNA helicase DeaD [Staphylococcus
           epidermidis SK135]
 gi|281294764|gb|EFA87292.1| putative ATP-dependent RNA helicase DeaD [Staphylococcus
           epidermidis SK135]
 gi|329735713|gb|EGG71996.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU028]
          Length = 509

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 156/412 (37%), Positives = 233/412 (56%), Gaps = 25/412 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S K V  +   G+ +PTPIQ  +IP  L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  G+  V+   +LIL PTRELA QVA+   ++ K   + V  + GG+P E Q K L+R
Sbjct: 63  KV-VGQQGVQ---SLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKR 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180
           G  +++ TPGR++DH NR  L    I  L++DEAD M++MGFI  ++ I   +P   RQT
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +Q++ + F++ PK I+      +   I+  +  T  +  +K       L 
Sbjct: 179 MLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYY--TIVKELEKFDTFTNFLD 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++V
Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  I
Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK----------IDIAQHNHARKNNPIPQK 402
           E       D  N  + +L PP  K           D  Q+  +R+N P  Q+
Sbjct: 356 E-------DVNNRRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPRLQR 400


>gi|261251266|ref|ZP_05943840.1| ATP-dependent RNA helicase DbpA [Vibrio orientalis CIP 102891]
 gi|260938139|gb|EEX94127.1| ATP-dependent RNA helicase DbpA [Vibrio orientalis CIP 102891]
          Length = 458

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 148/364 (40%), Positives = 221/364 (60%), Gaps = 7/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++   +   GY + TPIQ + +P+VL   DV G  +TG+GKTA+F L +L+ 
Sbjct: 5   FKTLNLRPELTETLDSLGYTEMTPIQQQALPMVLAGKDVIGQGKTGSGKTATFSLGLLSN 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   TL+L PTRELA QVA       +  +N+ V  L GG+P   Q   LE 
Sbjct: 65  LNVKRFRVQ---TLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH ++G++ ++ +  LV+DEADRMLDMGF   I  I   VP  RQTL
Sbjct: 122 GAHILVGTPGRILDHMSKGRISLDELNTLVLDEADRMLDMGFEDAIDTIIDAVPEKRQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D +  ++   + NP+ ++V + +    TIE  F        +  AL   LL  
Sbjct: 182 LFSATFPDNIDSLAAKVMVNPEMVKVES-THQKSTIEQKFYKLNTTEERDDALEALLLTH 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   ++ ++FCN KK V N+   L  +GFSV  +HG+++QR R + L+ F   +I ++VA
Sbjct: 241 KP--ESSVVFCNTKKEVQNVTDELGHRGFSVVELHGDMEQREREQALTMFANKSISILVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+  ++++   +  I+
Sbjct: 299 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAFSFYSEKEEYRVARID 358

Query: 362 KLIE 365
           + ++
Sbjct: 359 EYMD 362


>gi|192362407|ref|YP_001982121.1| ATP-dependent RNA helicase [Cellvibrio japonicus Ueda107]
 gi|190688572|gb|ACE86250.1| ATP-dependent RNA helicase, DEAD box family [Cellvibrio japonicus
           Ueda107]
          Length = 477

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 226/370 (61%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+FA LGL+P+++ AV   G+ + TP+Q + IP   +  D+   AQTGTGKTA+F  P+L
Sbjct: 29  MNFAALGLAPELLRAVKRCGFQQLTPVQEQAIPPARRGRDLLVTAQTGTGKTAAFGFPLL 88

Query: 61  T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +LEK RA +    R L+L PTREL  QVADN ++Y    +LT+A + GG+   +Q  K
Sbjct: 89  QQLLEKPRATQPGHTRALVLAPTRELVEQVADNLQQYAHFTSLTIAAVYGGVKHSSQANK 148

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G DVL+ TPGR+L+H   G + +  +E LV+DEADRMLDMGF+  I  + + +    
Sbjct: 149 LQAGLDVLVATPGRLLEHVELGNINLQQVEFLVLDEADRMLDMGFVGEISKLLNGMGKKP 208

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L FSAT+T  +  +++  L  P  + V+  ++ A+T+EH         ++K  L  +L
Sbjct: 209 QILFFSATLTQSVTTLAKEILARPLSVAVSKRNAVADTVEHLLYPV--DQARKYELFMEL 266

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L++ +  +  ++F + ++    L ++L++       IH    Q +R + L  FKEG +Q+
Sbjct: 267 LRTHNWFQV-MVFSSTREEADKLINALKEDNVEGAVIHSEKTQGARRRALKEFKEGKLQV 325

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDI  + +V N D+P   E+Y+HR+GRTGRAG  G A +LV+  D   + 
Sbjct: 326 LVATEVAARGLDIQGLDYVVNLDLPFFIEDYVHRVGRTGRAGSKGIAISLVSASDEPKVA 385

Query: 359 AIEKLIEKKV 368
            IEK I  K+
Sbjct: 386 LIEKAIGTKI 395


>gi|281424310|ref|ZP_06255223.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           F0302]
 gi|281401579|gb|EFB32410.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           F0302]
          Length = 544

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 144/373 (38%), Positives = 233/373 (62%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  + K TP+Q   IP +L+ +DV G+AQTGTGKTA+++LP+L
Sbjct: 3   MYFDELELNDNVLDALYDMRFEKCTPVQENCIPEILKGNDVLGVAQTGTGKTAAYLLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIG--GIPFEAQN 116
           + L+ G         LI+ PTRELA Q+    + +G   N   +VA+  G  G  ++ + 
Sbjct: 63  SKLDDGGYPDNAINCLIMSPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQEL 122

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GAD++I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P 
Sbjct: 123 KSLQLGADIVIATPGRLISHISLGNVDLSKVSFFILDEADRMLDMGFSDDIIKIAKKLPQ 182

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             QT++FSATM D+++ +++  L+NPK I++   S  AE I+      Y   ++K  +++
Sbjct: 183 NCQTIMFSATMPDKIEDLAKTLLKNPKVIKLAV-SKPAEKIKQSAYVCYE--TQKMGIIK 239

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            + ++ D ++  IIFC  K  V  +  +L+++  +   +H ++DQ +R  ++  FK G  
Sbjct: 240 DIFKNGD-LERVIIFCGSKLKVKQVAGALQRKHINCGEMHSDLDQATRDDVMFKFKSGQF 298

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ ARG+DI D+  V N+DVP+ AE+Y+HRIGRT RA R G A T V+++DI +
Sbjct: 299 DVLVATDIVARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARAAREGSAITFVSEDDIYY 358

Query: 357 IDAIEKLIEKKVD 369
              IEK +EK+V+
Sbjct: 359 FQQIEKFLEKEVE 371


>gi|256825728|ref|YP_003149688.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
 gi|256689121|gb|ACV06923.1| DNA/RNA helicase, superfamily II [Kytococcus sedentarius DSM 20547]
          Length = 499

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 153/435 (35%), Positives = 237/435 (54%), Gaps = 31/435 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD G+ P +V A+   G   P PIQ  T+P+ L R D+ G A+TGTGKT  F +PM+  
Sbjct: 6   FADFGIHPDIVAALEAGGITHPFPIQSMTLPVALDRQDIIGQAKTGTGKTLGFGVPMVQN 65

Query: 63  L----EKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +     +G     R   P+ L + PTRELA QVA + E+      + V  + GG  +E Q
Sbjct: 66  VVGPNHEGYDQLERPGAPQALAVAPTRELALQVATDLERAAARLGVRVLTVYGGRAYEPQ 125

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + LERG ++++ TPGR++D   RG L + +   +V+DEAD MLD+GF+P ++ + ++ P
Sbjct: 126 IEALERGVEIVVGTPGRLIDLAERGHLTLAHARTVVLDEADEMLDLGFLPDVEKLLAMTP 185

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRI----EVNTPSSTAETIEHCFVATYAQYSKK 231
             R T+LFSATM   +  ++  ++  P  I    EV    +T E I+      +A    K
Sbjct: 186 AGRHTMLFSATMPGAVVAMARRYMNQPTHIRAMEEVPGAGATVEAIDQFVYRAHAM--DK 243

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             ++ +LLQS+      I+F   K+    +   L ++GF+  AIHG++ Q +R + L  F
Sbjct: 244 VEMVARLLQSEGRGLT-IVFTRTKRTAAKVAEQLVERGFAAAAIHGDLGQGAREQALRAF 302

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++VA+D+AARG+D+ DV HV N+  P   + Y+HRIGRTGRAG++G A TLV  
Sbjct: 303 RTGKVDVLVATDVAARGIDVEDVTHVVNYQCPEDEKTYLHRIGRTGRAGKNGVAVTLVDW 362

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           +D+     I + +E               P E    + H +A  +  IP + TG     +
Sbjct: 363 DDLHRWAVINRALEL----------GAPEPAETYSTSAHFYA--DQRIPAEVTG-----E 405

Query: 412 NYSSQKSHIPLKESE 426
             S+Q++   LK  E
Sbjct: 406 LPSAQRTRAGLKAEE 420


>gi|242241488|ref|ZP_04795933.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144]
 gi|242235031|gb|EES37342.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144]
          Length = 528

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 156/412 (37%), Positives = 233/412 (56%), Gaps = 25/412 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S K V  +   G+ +PTPIQ  +IP  L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 22  NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 81

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  G+  V+   +LIL PTRELA QVA+   ++ K   + V  + GG+P E Q K L+R
Sbjct: 82  KV-VGQQGVQ---SLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKR 137

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180
           G  +++ TPGR++DH NR  L    I  L++DEAD M++MGFI  ++ I   +P   RQT
Sbjct: 138 GPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 197

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +Q++ + F++ PK I+      +   I+  +  T  +  +K       L 
Sbjct: 198 MLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYY--TIVKELEKFDTFTNFLD 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++V
Sbjct: 256 VHQP-ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILV 314

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  I
Sbjct: 315 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 374

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK----------IDIAQHNHARKNNPIPQK 402
           E       D  N  + +L PP  K           D  Q+  +R+N P  Q+
Sbjct: 375 E-------DVNNRRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPRLQR 419


>gi|111023319|ref|YP_706291.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
 gi|110822849|gb|ABG98133.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
          Length = 555

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/374 (40%), Positives = 220/374 (58%), Gaps = 16/374 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+  ++V A+ + G  +   IQ  T+PL L   D+ G A+TG GKT  F +P+L  
Sbjct: 40  FAELGVRDEIVRALDEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLHR 99

Query: 63  LEKGRARVR----MPRTLILEPTRELAAQVADNFE---KY--GKNYNLTVALLIGGIPFE 113
           +  G          PR L++ PTREL  QV  + E   KY  G+   L V  + GG P+E
Sbjct: 100 ISSGTTGTAALDGTPRALVIVPTRELCIQVTKDLEGAAKYLKGEKNKLEVLAIYGGRPYE 159

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L++GADV++ TPGR+LD  N+G L++  +E+LV+DEAD MLD+GF+P I+ I  +
Sbjct: 160 TQIATLQKGADVVVGTPGRLLDLANQGHLILGKVEVLVLDEADEMLDLGFLPDIERILGM 219

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA---ETIEHCFVATYAQYSK 230
           VP  RQT+LFSATM   +  ++  FL  P  I       +A    T +H +    A    
Sbjct: 220 VPDKRQTMLFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHIY---RAHALD 276

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K  ++ ++LQ++      +IF   K+    +   L ++GFSV ++HG+++Q +R K L  
Sbjct: 277 KAEMVARVLQAEGRGAT-MIFTRTKRTAQKVADDLAERGFSVGSVHGDLNQVAREKALKA 335

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G A TLV 
Sbjct: 336 FRTGKIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAVTLVD 395

Query: 351 KEDIKHIDAIEKLI 364
            +DI     I+K +
Sbjct: 396 WDDIPRWQLIDKAL 409


>gi|78213173|ref|YP_381952.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
 gi|78197632|gb|ABB35397.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
          Length = 607

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 139/371 (37%), Positives = 221/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G S  ++  + D GY +P+PIQ    P ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 59  FAGFGFSEALLRTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 118

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           LE G+   + P+ L+L PTRELA QVA++F+ Y   + +L V  + GG  F +Q   L R
Sbjct: 119 LESGQ---KTPQALVLAPTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQISALRR 175

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR++DH  +G L  + +  LV+DEAD ML MGFI  ++ I   +P  RQ +
Sbjct: 176 GVDVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQRQVV 235

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++S+ +L++P  + + T     + I    +     +  K   LQ++L +
Sbjct: 236 LFSATMPPEIRRLSKRYLKDPAEVTIRTKDQEGKRIRQRSITVPMPH--KLEALQRVLDA 293

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  IIF   K   + +  +LE  G  V  ++G++ Q  R + +   + G++ ++VA
Sbjct: 294 CGS-EGVIIFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVA 352

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N+D+P  +E Y+HRIGRTGRAGR G+A   V   + + I  +E
Sbjct: 353 TDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPRERRFIRNLE 412

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 413 RATGQPIEAME 423


>gi|307729303|ref|YP_003906527.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307583838|gb|ADN57236.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
          Length = 530

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 149/388 (38%), Positives = 226/388 (58%), Gaps = 32/388 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA LGLS  VV A+  AGY  PTP+Q + +P  +   D+   + TG+GKTA+F+LP +  
Sbjct: 50  FASLGLSADVVSALTAAGYQNPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 109

Query: 61  -TILEK--------------GRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNY-N 100
            + L+K              GR R    V  P  L+L PTRELA QV      YGK+   
Sbjct: 110 FSQLQKAQASQPREPRPADGGRGRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKR 169

Query: 101 LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160
           L    ++GG+ +  Q   L +  ++L+ TPGR++DH  RG++ ++ ++ILV+DEADRMLD
Sbjct: 170 LRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLD 229

Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV----NTPSSTAET 216
           MGFI  I+ I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+       ++ A+T
Sbjct: 230 MGFIEDIETIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRTNIAQT 289

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
           + +           K  LL  LL+    +   I+F   K +   L   L   GF   A+H
Sbjct: 290 VHYV-----DDRDHKDRLLDHLLRDAG-LDQAIVFTATKMDADQLAGRLADAGFESAALH 343

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRT
Sbjct: 344 GDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRT 403

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           GRAGR G A +LV   +   +  IE+ +
Sbjct: 404 GRAGRSGIAVSLVHHAEQGALKRIERFV 431


>gi|254821954|ref|ZP_05226955.1| RhlE [Mycobacterium intracellulare ATCC 13950]
          Length = 452

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 147/371 (39%), Positives = 216/371 (58%), Gaps = 10/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+  ++V A+ + G   P  IQ  T+PL L   D+ G A+TG GKT +F +P+L  
Sbjct: 12  FAQLGVRDEIVRALAEKGIESPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQR 71

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIPFE 113
           +  G A   +   PR LI+ PTREL  QV D+     K+        L+V  + GG P+E
Sbjct: 72  ITSGTAARPLNGTPRALIVVPTRELCLQVTDDLALAAKHLTADEGRRLSVVPIYGGRPYE 131

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           AQ + L  GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+ I   
Sbjct: 132 AQIEALRAGADVVVGTPGRLLDLSQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQ 191

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ++LFSATM D +  ++  F+  P  I    P S A        A  A    K  
Sbjct: 192 IPVDRQSMLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQYAYRAHALDKVE 251

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L+ ++LQ++      +IF   K+    +   L ++GF+V A+HG++ Q +R K L  F+ 
Sbjct: 252 LVSRILQAEGRGAT-MIFTRTKRTAQKVADELAERGFAVGAVHGDLGQVAREKALKAFRT 310

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I ++VA+D+AARG+DI DV HV N+ +P   + Y+HRIGRTGRAG+ G A TLV  ++
Sbjct: 311 GDIDVLVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKTGVAVTLVDWDE 370

Query: 354 IKHIDAIEKLI 364
           +     I+K +
Sbjct: 371 LTRWALIDKAL 381


>gi|84385216|ref|ZP_00988248.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01]
 gi|84379813|gb|EAP96664.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01]
          Length = 673

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 140/370 (37%), Positives = 222/370 (60%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L L+  ++ A+   G+V PTPIQ   IPL+L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFNELALNDNILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             +   + +   P+ +I+ PTRELA QVA   +  G++ N L V  + GG     Q + L
Sbjct: 66  NKINLNQHK---PQAIIMAPTRELAIQVAAEIKNLGRDINGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR+ D   R +L ++     V+DEAD ML MGF+  +  I    P + Q
Sbjct: 123 SRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++ + + +L+NP R++V   + T + +   +        +K   + +LL
Sbjct: 183 RVLFSATMPPMVKTIVDRYLRNPARVDVAGTNHTVDKVAQNYWVVKG--VEKDEAMSRLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T  + I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 241 ETEETDAS-IVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVD 369
           IE++ + +++
Sbjct: 360 IERVTKSQME 369


>gi|126651493|ref|ZP_01723697.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905]
 gi|126591746|gb|EAZ85842.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905]
          Length = 513

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 144/380 (37%), Positives = 229/380 (60%), Gaps = 13/380 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L +S   + +V   G+ + TPIQ  TI   ++  DV G AQTGTGKTA+F +P++ 
Sbjct: 3   NFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++    L++ PTRELA QV++   K G +  + +  + GG     Q + L+ 
Sbjct: 63  KIDPKNPNIQ---ALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRALKN 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI+DH NR  L + +++ LV+DEAD ML+MGFI  I +I   VP  RQTL
Sbjct: 120 KPQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPAERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K++E F+++P+ +++     T + I+  FV +  +  +K  +L +LL  
Sbjct: 180 LFSATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAER--EKFDVLSRLLNV 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  IIF   K+ V  L  +L  +G+    IHG++ Q  R+ +L  FKE  I ++VA
Sbjct: 238 HQP-ELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLRIVE 356

Query: 362 KLIEKKVDWLNGDLSSLNPP 381
           +  +K+       ++ L PP
Sbjct: 357 ETTKKR-------MTPLRPP 369


>gi|229820496|ref|YP_002882022.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333]
 gi|229566409|gb|ACQ80260.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM
           12333]
          Length = 589

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 142/367 (38%), Positives = 211/367 (57%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV   G+  PTPIQ   IP +L   D+ G+AQTGTGKTA+F LP+L  
Sbjct: 22  FDDLGLPQALLDAVTGLGFTTPTPIQTAAIPALLSGRDLVGVAQTGTGKTAAFGLPLLAA 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLER 121
           ++   A V+    L+L PTRELA QV+D    +      + V  + GG  F  Q + LER
Sbjct: 82  VDPQLAAVQ---ALVLTPTRELAIQVSDAVASFVPSGAGVKVLPIYGGASFVPQLRGLER 138

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++D   RG L ++ +  LV+DEAD ML MGF   +  I +  P T+Q  
Sbjct: 139 GAQVVVGTPGRVIDLLERGSLDLDALRYLVLDEADEMLRMGFAEDVDVILAKTPATKQVA 198

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++KV+E  L+NP+ I V   ++    +   +      Y  K   L ++L +
Sbjct: 199 LFSATMPPPIRKVAETHLRNPEEIAVARQATPIAAVTQTY--AIVPYRNKAEALSRVLAT 256

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D     I+F   ++    +  +L  +G +  +I G++ QR R +I+   + G + ++VA
Sbjct: 257 SDA-DAAIVFVRTRETAEEVGTALASRGINAASISGDVAQRERERIVERLRSGALDVLVA 315

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V NFDVP   E Y+HRIGRTGRAGR G A T +  ++   +  IE
Sbjct: 316 TDVAARGLDVERIGLVVNFDVPREVETYVHRIGRTGRAGRTGNALTFLTPKEKPRLRTIE 375

Query: 362 KLIEKKV 368
           ++   ++
Sbjct: 376 RVTGSRL 382


>gi|310644435|ref|YP_003949194.1| dead/deah box helicase domain protein [Paenibacillus polymyxa SC2]
 gi|309249386|gb|ADO58953.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
          Length = 525

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 144/363 (39%), Positives = 220/363 (60%), Gaps = 6/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LG+    V A+ + G   PTP+Q ++IPL+++  DV   A TGTGKT +F+LP+L 
Sbjct: 3   NFTALGVEQHWVEALKEQGISAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFE-KYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L   +   R P+ L++ PTRELA Q+ +  +       +L++  + GG   E Q +KL+
Sbjct: 63  KLNLDK---RHPQALVIAPTRELALQITEEAKCLAAAEPSLSLLAVYGGQDVERQLRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA ++I TPGR+LDH  RG L +  I++LV+DEAD+ML MGF+  ++ I   VP+ RQT
Sbjct: 120 GGAQLIIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEVPYRRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++K++  ++  P  ++V + SS   +     V       K+ AL+  L  
Sbjct: 180 MLFSATMPAGIRKLARVYMNEPVDVKVKSASSVPVSQIRQVVVQTTDRGKQQALVDML-- 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D     +IFC  K+    L   L++ GF    +HG++ Q  R +++  F+E  +QL+V
Sbjct: 238 NTDRPYLAVIFCRTKRRASKLNEELQEMGFESGELHGDLSQNKREQVMKAFREAKLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P  AE+YIHRIGRTGRAG  G A TL    D+  +  I
Sbjct: 298 ATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPELRNI 357

Query: 361 EKL 363
           +++
Sbjct: 358 QRV 360


>gi|282917430|ref|ZP_06325183.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus D139]
 gi|282318632|gb|EFB48989.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus D139]
          Length = 506

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 149/384 (38%), Positives = 225/384 (58%), Gaps = 15/384 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S   V ++   G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  G+  V+   +LIL PTRELA QVA+   ++ +   + V  + GG+P E Q K L++
Sbjct: 63  KV-VGKQGVQ---SLILAPTRELAMQVAERLREFSRGQGVQVVTVFGGMPIERQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQT 180
           G  +++ TPGR++DH NR  L  + I  L++DEAD M++MGFI  ++ I   +P   RQT
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +Q + + F+++PK I+      +   IE  +  T  +  +K       L 
Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNFLD 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++V
Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  I
Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E    +K       +S+L PP  K
Sbjct: 356 EDANGRK-------MSALRPPHRK 372


>gi|229133365|ref|ZP_04262193.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST196]
 gi|228650038|gb|EEL06045.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST196]
          Length = 450

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 154/423 (36%), Positives = 244/423 (57%), Gaps = 28/423 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   DV G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDVIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 66  KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ +++ P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMEEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K  V  L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ-------HNHARKNNPIPQKSTGFDRRKKNY 413
           EK              +L  P+++  I Q        N      P P+KS  + +R    
Sbjct: 360 EK--------------TLGAPIQREIIEQPMIKNVDENGKPVQKPAPKKSGQYRQRDSRE 405

Query: 414 SSQ 416
            S+
Sbjct: 406 GSR 408


>gi|197334079|ref|YP_002154825.1| ATP-dependent RNA helicase RhlB [Vibrio fischeri MJ11]
 gi|226739236|sp|B5FF87|RHLB_VIBFM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|197315569|gb|ACH65016.1| ATP-dependent RNA helicase RhlB [Vibrio fischeri MJ11]
          Length = 432

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 152/385 (39%), Positives = 228/385 (59%), Gaps = 13/385 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
           +FADLGL P+V+  +   G++K TPIQ K +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  NFADLGLQPQVIDGLNAKGFIKCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 59  --MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             + T   +GR ++  PR +I+ PTRELA Q+ ++ E    +  L  AL  GG  +E Q 
Sbjct: 70  HLLTTPAPEGR-KITQPRAIIMAPTRELAIQIFNDAESLIASTGLKAALAYGGERYEKQQ 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + +E+G D+LI T GRI+D + +G +    I+ +V+DEADRM D+GFI  I+ I   +P 
Sbjct: 129 QVIEQGVDILIGTTGRIIDFYKQGHIDFKMIQAVVLDEADRMFDLGFIKDIRFIFRRMPA 188

Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCA 233
              R  +LFSAT++  +Q+++   +Q P+ + V     T   I E  F   Y     K A
Sbjct: 189 PTERLNMLFSATLSYRVQELAFEHMQEPEHVVVEPEQKTGHRIKEELF---YPSNDHKMA 245

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LLQ L++ ++     IIF N K    ++   L      V  + G++ Q+ R +IL  F +
Sbjct: 246 LLQTLIE-EEWPDRAIIFANTKHKCESVWGHLAADKHRVGLLTGDVPQKKRERILEEFTQ 304

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G + ++VA+D+AARGL IP V HVFNFD+PN AE+Y+HRIGRTGRAG  G + +   +E 
Sbjct: 305 GNVDILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGASGNSISFACEEY 364

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL 378
             ++ AIE+ IE  +   + D S+L
Sbjct: 365 AINLPAIEEYIEHSIPQSDYDASAL 389


>gi|302333727|gb|ADL23920.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 506

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 149/384 (38%), Positives = 225/384 (58%), Gaps = 15/384 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S   V ++   G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  G+  V+   +LIL PTRELA QVA+   ++ +   + V  + GG+P E Q K L++
Sbjct: 63  KV-VGKQGVQ---SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQT 180
           G  +++ TPGR++DH NR  L  + I  L++DEAD M++MGFI  ++ I   +P   RQT
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +Q + + F+++PK I+      +   IE  +  T  +  +K       L 
Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNFLD 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++V
Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  I
Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E    +K       +S+L PP  K
Sbjct: 356 EDANGRK-------MSALRPPHRK 372


>gi|302327262|gb|ADL26463.1| ATP-dependent RNA helicase DeaD [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 739

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 142/370 (38%), Positives = 220/370 (59%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLSP+V+ AV  AGY  P+PIQ K IP +LQ  ++ G AQTGTGKTA+F LP+L+ 
Sbjct: 63  FDDLGLSPEVLEAVKLAGYETPSPIQAKAIPALLQGANLLGTAQTGTGKTAAFSLPLLSR 122

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121
           +        M   L+L PTRELA QV+D  ++Y  K  N+TV  + GG     Q + L+R
Sbjct: 123 INFNGRETSM---LVLTPTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQLRALKR 179

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            A +++ TPGR++DH  RG + +  ++ +V+DEAD MLDMGF+  ++ I   +P   Q  
Sbjct: 180 KASIVVATPGRLIDHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPADAQRA 239

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++K+ +  L   +   +   ++T E I  C      +   K   L ++L+ 
Sbjct: 240 LFSATMPDSVKKIIDQHLGEYEEARIEGKTTTVENI--CQRYLLVKNEHKIEALARVLEG 297

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++     +IF   K+N   +   LE +GF+V  ++G++ Q  R + ++  K G + ++VA
Sbjct: 298 EE-FDGVLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIVVA 356

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+  +  V N+D+P   E+Y+HRIGRTGRAGR G A   +   + + +  IE
Sbjct: 357 TDVAARGIDVDRISLVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFITPREKRMLKTIE 416

Query: 362 KLIEKKVDWL 371
           K   + +D +
Sbjct: 417 KATRQPIDVM 426


>gi|225028959|ref|ZP_03718151.1| hypothetical protein EUBHAL_03251 [Eubacterium hallii DSM 3353]
 gi|224953734|gb|EEG34943.1| hypothetical protein EUBHAL_03251 [Eubacterium hallii DSM 3353]
          Length = 529

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 148/368 (40%), Positives = 220/368 (59%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L + P+++ AV + G+   +PIQ K IP+ L   DV G AQTGTGKTA+F +P   I
Sbjct: 6   FTELDIKPEILKAVANMGFEAMSPIQAKAIPVELSGKDVIGQAQTGTGKTAAFGIP---I 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKLE 120
           L+K   +++ P+ ++L PTRELA QVAD   K  K Y  +V +L   GG     Q + L+
Sbjct: 63  LQKVDPKLKKPQAIVLCPTRELAIQVADEIRKLAK-YMSSVKILPIYGGQEISKQIRSLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  ++I TPGR++DH  R  +  +NI  +V+DEAD MLDMGF   I+ I + VP  RQT
Sbjct: 122 AGVQIIIGTPGRMMDHMRRKTVKFDNIHTVVLDEADEMLDMGFREDIETILNGVPEERQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   + +++  + QNP+ I+V     T   I   +     +   K  +L +LL 
Sbjct: 182 MLFSATMPKPIMELARAYQQNPEIIKVIRKELTVPNITQYYYEVRPK--NKSEVLSRLLD 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  K  ++FCN KK V  L   L+ +G+    +HG++ Q  R +++  F+ G   ++V
Sbjct: 240 IYDP-KLSVVFCNTKKGVDELVADLKGRGYFAEGLHGDMKQTMRDRVMHRFRSGKTDILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G AF+ V   ++  +  I
Sbjct: 299 ATDVAARGIDVDDVDAVFNYDLPQDEEYYVHRIGRTGRAGRTGMAFSFVVGREVYKLKDI 358

Query: 361 EKLIEKKV 368
            +  + K+
Sbjct: 359 RRYCKAKI 366


>gi|237796237|ref|YP_002863789.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Ba4 str. 657]
 gi|229263626|gb|ACQ54659.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Ba4 str. 657]
          Length = 524

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 142/384 (36%), Positives = 236/384 (61%), Gaps = 7/384 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L L+  V+ A+   G+  P+ IQ K+IP+VL+  DV   AQTGTGKT +F  P+++
Sbjct: 5   NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   + + +  + L+L PTRELA Q+ D  ++  +     V  + GG   E Q K ++ 
Sbjct: 65  AL-CDKEKKKGVKALVLTPTRELALQIKDELKRLSEYSKTKVLPVYGGESIERQIKDIKS 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR+LDH NR  L +  I+ L++DEAD ML+MGFI  I+ I       +QT+
Sbjct: 124 GVDIVVGTPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183

Query: 182 LFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSATM + ++K++ N+++ + + I +   S T + I   + A   +   K   L +++ 
Sbjct: 184 LFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAV--KNKDKLEALCRIID 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++  ++ IIFC  K+ V  L  +++ +G++V  +HG++ Q  R+  L  FK+ T+  +V
Sbjct: 242 SEEP-ESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HV N+D+P  AE+Y+HRIGRTGRA + G A++LV   ++  I  I
Sbjct: 301 ATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E++ + K+     +L +L   LEK
Sbjct: 361 ERITKSKIK--KKELPTLEDILEK 382


>gi|145569766|gb|ABP78872.1| ATP-dependent RNA helicase RhlB [Pseudomonas stutzeri A1501]
          Length = 526

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 225/373 (60%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  L+P+++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++  +T 
Sbjct: 140 FHDFKLAPELMHAIHDLGFPYCTPIQAQVLGYTLKGRDAIGRAQTGTGKTAAFLISTITQ 199

Query: 62  ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LE    + R    PR LI+ PTREL  Q+A++     K   L V   +GG+ F+ Q K+
Sbjct: 200 LLETPPPKERYMGEPRALIIAPTRELVVQIANDALDLTKYTGLNVMSFVGGMDFDKQLKQ 259

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 260 LESRYCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 319

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT TD++  +++ +  NP  +E+   +  ++T+E    A     S K  LL
Sbjct: 320 SERQTLLFSATFTDDVMNLAQQWTTNPAVVEIEPENVASDTVEQHVYAVAG--SDKYKLL 377

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ +Q+     ++F N+K  V  +   L K G S   + G++ Q  R++ L  F+EG 
Sbjct: 378 YNLI-TQNDWTRVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 436

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ +  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 437 IRVLVATDVAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGTSISFAGEDDAF 496

Query: 356 HIDAIEKLIEKKV 368
            +  IE LI +K+
Sbjct: 497 ALPPIEALIGRKI 509


>gi|161521775|ref|YP_001585202.1| ATP-dependent RNA helicase DbpA [Burkholderia multivorans ATCC
           17616]
 gi|189352063|ref|YP_001947690.1| ATP-dependent RNA helicase DbpA [Burkholderia multivorans ATCC
           17616]
 gi|221210620|ref|ZP_03583600.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD1]
 gi|160345825|gb|ABX18910.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
           ATCC 17616]
 gi|189336085|dbj|BAG45154.1| ATP-independent RNA helicase [Burkholderia multivorans ATCC 17616]
 gi|221169576|gb|EEE02043.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD1]
          Length = 464

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/392 (38%), Positives = 225/392 (57%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P ++  +   GYV  TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L+ 
Sbjct: 9   FSTLPLTPAMLANLEQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    +IL PTRELA QVA    +  +   N+ V  L GG P   Q + LE 
Sbjct: 69  LDARRFDVQ---AMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLQLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL++PK +++      ++  +  +  T  +      +L    + 
Sbjct: 186 LFSATYPDGIAKLSQQFLRSPKEVKLEERHDDSKIRQRFYEVTETERLHAVGMLLNHYRP 245

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 246 VST----IAFCNTKQQCRDLIDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQAGWALSLASMDEMGRVGAIE 361

Query: 362 KLIEKKVDW------LNGDLSSLNPPLEKIDI 387
           +  ++ V+W           + L PP+E + I
Sbjct: 362 QAQKRDVEWRPLSELTPASDAPLLPPMETLQI 393


>gi|332826518|gb|EGJ99347.1| hypothetical protein HMPREF9455_00380 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 371

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 148/365 (40%), Positives = 220/365 (60%), Gaps = 5/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   ++ A+ + GY  PTPIQ   IP+VL+  D+ G+AQTGTGKTA+F +P++
Sbjct: 1   MTFQELNIIEPILRALQEKGYTNPTPIQEDAIPVVLKNQDMLGLAQTGTGKTAAFSIPII 60

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L + +   R R  R LI+ PTRELA Q+ D   +Y     L   ++ GG+  +AQ  +
Sbjct: 61  QHLYQNKISGRKREIRALIITPTRELAIQINDCIREYTLYTGLRHCVIFGGVKQKAQTDE 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD  N+G + +N I   V+DEADRMLDMGFI  I+ +   +P  +
Sbjct: 121 LHKGIDILVATPGRLLDLMNQGFVSLNAITHFVLDEADRMLDMGFIHDIKRLLPKLPKDK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM   +  +S + L+NP R+EV   SS  + IE      + +   K  LL  L
Sbjct: 181 QTLFFSATMPPAIAALSRSILRNPVRVEVAPVSSVVDVIEQS--VYFVEKQDKKDLLINL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ +D  ++ ++F   K     +   L K G    AIHGN  Q +R + L+NFK    ++
Sbjct: 239 LK-KDKKQSVLVFSRTKHGADKIARLLCKAGIGSEAIHGNKSQNARQRALANFKSHKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+  +  V N+D+P+  E Y+HRIGRTGRAG  G A T  A+++   + 
Sbjct: 298 LIATDIAARGIDVNQLELVINYDLPDVPETYVHRIGRTGRAGHSGTALTFCAEDERPMLK 357

Query: 359 AIEKL 363
            I+KL
Sbjct: 358 DIQKL 362


>gi|258422918|ref|ZP_05685818.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A9635]
 gi|257846942|gb|EEV70956.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A9635]
          Length = 506

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 149/384 (38%), Positives = 225/384 (58%), Gaps = 15/384 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S   V ++   G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  G+  V+   +LIL PTRELA QVA+   ++ +   + V  + GG+P E Q K L++
Sbjct: 63  KV-VGKQGVQ---SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180
           G  +++ TPGR++DH NR  L  + I  L++DEAD M++MGFI  ++ I   +P   RQT
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAAQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +Q + + F+++PK I+      +   IE  +  T  +  +K       L 
Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNFLD 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++V
Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  I
Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E    +K       +S+L PP  K
Sbjct: 356 EDANGRK-------MSALRPPHRK 372


>gi|172087635|ref|YP_203439.2| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|226739701|sp|Q5E8U5|RHLB_VIBF1 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|171902232|gb|AAW84551.2| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 432

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 152/385 (39%), Positives = 228/385 (59%), Gaps = 13/385 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
           +FADLGL P+V+  +   G++K TPIQ K +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  NFADLGLQPQVIDGLNAKGFIKCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 59  --MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             + T   +GR ++  PR +I+ PTRELA Q+ ++ E    +  L  AL  GG  +E Q 
Sbjct: 70  HLLTTPAPEGR-KITQPRAIIMAPTRELAIQIFNDAESLIASTGLKAALAYGGERYEKQQ 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + +E+G D+LI T GRI+D + +G +    I+ +V+DEADRM D+GFI  I+ I   +P 
Sbjct: 129 QVIEQGVDILIGTTGRIIDFYKQGHIDFKMIQAVVLDEADRMFDLGFIKDIRFIFRRMPA 188

Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCA 233
              R  +LFSAT++  +Q+++   +Q P+ + V     T   I E  F   Y     K A
Sbjct: 189 PTERLNMLFSATLSYRVQELAFEHMQEPEHVVVEPEQKTGHRIKEELF---YPSNDHKMA 245

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LLQ L++ ++     IIF N K    ++   L      V  + G++ Q+ R +IL  F +
Sbjct: 246 LLQTLIE-EEWPDRAIIFANTKHKCESVWGHLAADKHRVGLLTGDVPQKKRERILEEFTQ 304

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G + ++VA+D+AARGL IP V HVFNFD+PN AE+Y+HRIGRTGRAG  G + +   +E 
Sbjct: 305 GNVDILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGASGNSISFACEEY 364

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL 378
             ++ AIE+ IE  +   + D S+L
Sbjct: 365 AINLPAIEEYIEHSIPQSDYDASAL 389


>gi|269218549|ref|ZP_06162403.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211660|gb|EEZ78000.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 767

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 141/371 (38%), Positives = 224/371 (60%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV + G+  PT IQ   IP++L+  DV G+AQTGTGKTA+F LP+L  
Sbjct: 129 FDDLGLPEDLLSAVKELGFSAPTAIQAAAIPILLRGRDVVGVAQTGTGKTAAFALPLLAH 188

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121
           ++  +  V+    L+L PTRELA Q A   E +  K+  + VA + GG  +  Q K LE 
Sbjct: 189 IDPEKREVQ---ALVLAPTRELAMQGAQAIESFAAKSRGVDVAAVYGGSSYLPQLKALEG 245

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+D  +RG L ++ +   V+DEAD ML MGF   ++ I S VP  R + 
Sbjct: 246 GAQVVVGTPGRIMDLMDRGALRLDAVRYFVLDEADEMLRMGFAEDVEKIASEVPEGRISA 305

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +++V+E  L + + + ++ P++T  T++  + A   +  K  AL + L  +
Sbjct: 306 LFSATMPPPIRRVAERHLSDAEEVTISRPATTVSTVKQMY-AVVPERHKIGALARVLAVT 364

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  ++F   +    +L   L  +G +  A+ G++ Q+ R K+++  ++GT+ ++VA
Sbjct: 365 E--AQAALVFVRTRSTAEDLTIELGARGVATAALSGDVVQKEREKLVARLRDGTLDVLVA 422

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V NFDVP   + Y+HRIGRTGRAGR G++ T V  ++   +  IE
Sbjct: 423 TDVAARGLDVDRIGLVVNFDVPRETDTYVHRIGRTGRAGRTGESITFVTPKERPRLRRIE 482

Query: 362 KLIEKKVDWLN 372
           K    +++ + 
Sbjct: 483 KQTGSRMEQIE 493


>gi|260774297|ref|ZP_05883212.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14]
 gi|260611258|gb|EEX36462.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14]
          Length = 633

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 143/364 (39%), Positives = 218/364 (59%), Gaps = 7/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IPL+L   D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNSTLLSALNEMGFVTPTPIQSAAIPLLLAGRDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L+  + +   P+ +++ PTRELA QVA   +  GKN   L V  + GG     Q + L
Sbjct: 66  NKLDLTQYK---PQAIVMAPTRELAIQVAAEIKTLGKNIKGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     V+DEAD ML MGF+  +  I    P T Q
Sbjct: 123 KSGAHIIVGTPGRVKDLITRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQSPETAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++ + + FL++P R++V   + T   +E  +        +K   + +LL
Sbjct: 183 RVLFSATMPPIVKDIVDRFLRDPARVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLIARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRINHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKL 363
           IE++
Sbjct: 360 IERV 363


>gi|323706324|ref|ZP_08117890.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534376|gb|EGB24161.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 513

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 141/365 (38%), Positives = 223/365 (61%), Gaps = 11/365 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF +L L+ K++ A+ D G+ +P+ IQ + IP++L+  DV G A+TGTGKT ++  P++
Sbjct: 1   MDFKELHLNEKILKAIDDMGFEEPSKIQSEVIPVLLEGLDVIGQAETGTGKTLAYGAPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                   +V     L+L PTRELA QV D   + GK   + +  + GG+  + Q K ++
Sbjct: 61  NNFSSNDGKVF---CLVLTPTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDRQIKAIK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+++ TPGR+LD   R  L + ++  LVIDEAD M+DMGFI  I+ I +     RQT
Sbjct: 118 RGVDIVVGTPGRVLDLIKRNVLDLKSVRYLVIDEADEMMDMGFIDDIKEIINHTNKERQT 177

Query: 181 LLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQ 237
           ++FSATM DE++ +++ +++ + K I +   + T  T++H +  V    ++   C +L  
Sbjct: 178 MMFSATMPDEIKNLAKKYMKSDAKFISIVKKTMTVSTVQHFYYEVKNQERFESLCRIL-- 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                +   + IIFC  KK V  L  +++ +G++V  +HG++ Q  R+  L  FKEG + 
Sbjct: 236 ---DVEEPSSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGILD 292

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARG+DI +V HV N+++P   E+Y+HRIGRTGRA R G A+TLV   +   +
Sbjct: 293 FLVATDVAARGIDIENVTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYPAL 352

Query: 358 DAIEK 362
             IEK
Sbjct: 353 KRIEK 357


>gi|313202644|ref|YP_004041301.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312441960|gb|ADQ78316.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 621

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 230/368 (62%), Gaps = 8/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPM 59
           M F +L L   ++ A+ + GY +P P+Q KTIP +L Q  D+  +AQTGTGKTA+F LP+
Sbjct: 1   MTFRELNLKDDILSAIEELGYAQPMPVQEKTIPFMLEQTADLVALAQTGTGKTAAFGLPV 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
           L +++ GR +V+    L+L PTREL  Q+A++ + Y KN   + +  + GG     Q ++
Sbjct: 61  LNMIDAGRKQVQ---ALVLAPTRELCIQIANDLKGYSKNMRGMRIVPVYGGEDIRTQLRQ 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+    +++ TPGR++D   RGK+ +  I+ LV+DEAD ML+MGF   I+ I    P TR
Sbjct: 118 LDTAPQIIVATPGRLIDLIERGKIELGAIDFLVLDEADEMLNMGFKEDIETILERTPETR 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +T+LFSATM  E+  +++ +++N + I V T ++ +E +EH +  + A+  ++  +L+++
Sbjct: 178 RTMLFSATMPKEIANIAKRYMKNYEEITVGTKNAGSENVEHIYYVSQAR--QRYLVLKRI 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +  GI+FC  ++    +   L   G++  A+HG++ Q  R  ++  F+   IQL
Sbjct: 236 VDLNPDIY-GIVFCRTRQETKEVADKLMHDGYNADALHGDLSQAQRDNVMQKFRIRNIQL 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ D+ HV N+++P+  E Y HR GRTGRA + G A +++  ++   I 
Sbjct: 295 LVATDVAARGLDVSDLTHVINYNLPDDVEVYTHRSGRTGRANKKGIAVSIIHSKERFKIK 354

Query: 359 AIEKLIEK 366
            IE+++ K
Sbjct: 355 DIERMLRK 362


>gi|291522717|emb|CBK81010.1| Superfamily II DNA and RNA helicases [Coprococcus catus GD/7]
          Length = 526

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 148/376 (39%), Positives = 227/376 (60%), Gaps = 12/376 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+  +++ AV + G+ + TPIQ K IP V+   D+ G AQTGTGKTASF +PML  
Sbjct: 6   FEDLGVDERILRAVTEMGFEEATPIQAKAIPEVMTGQDIIGQAQTGTGKTASFGIPMLQK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++     V+    ++L PTRELA Q AD   K  K  + + V  + GG     Q + L+ 
Sbjct: 66  VDPKNKHVQ---AIVLCPTRELAIQSADEIRKLAKFMHGIKVLPIYGGQDIVKQIRSLKT 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  VLI TPGR++DH  R  + +++++I+V+DEAD ML+MGF   I+ I S  P  RQTL
Sbjct: 123 GVQVLIGTPGRVMDHMRRHTIKLDDLKIVVLDEADEMLNMGFREDIETILSQTPEERQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   + +++  + +N K ++V     T   IE  +     +   K  +L +LL  
Sbjct: 183 LFSATMPQPIMEIARTYQKNAKIVKVVKRELTVANIEQYYYEVRPK--NKEEVLSRLLDI 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + ++FCN K+ V  L   L+ +G+    +HG++ Q+ R ++++ F+ G  +++VA
Sbjct: 241 YNPALS-VVFCNTKRQVDELVEGLKGRGYFAEGLHGDMKQQQRDRVMNGFRNGRTEILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAG++GKAFT +   +   +  I+
Sbjct: 300 TDVAARGIDVDDVDAVFNYDLPQDDEYYVHRIGRTGRAGKNGKAFTFITGREFYKLKDIQ 359

Query: 362 -----KLIEKKVDWLN 372
                K+I K+V  LN
Sbjct: 360 RYCRTKIIAKQVPSLN 375


>gi|261409742|ref|YP_003245983.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|261286205|gb|ACX68176.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
          Length = 538

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 153/420 (36%), Positives = 243/420 (57%), Gaps = 22/420 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LG+  + V  + + G  +PTP+Q ++IPL+LQ  DV   A+TGTGKT +F+LP+L 
Sbjct: 13  NFQQLGIDEQRVRKLKEQGITEPTPVQQESIPLLLQGKDVIARAKTGTGKTLAFMLPILQ 72

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY--GKNYNLTVALLIGGIPFEAQNKKL 119
            ++  RA    P+ LI+ PTRELA Q+ +  +K   G+   + +  + GG   E Q +KL
Sbjct: 73  HIDPKRA---YPQALIVAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVEKQLRKL 129

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G  ++I TPGR+LDH  RG L +  ++ LV+DEAD+ML MGF+  ++ +   +P+ RQ
Sbjct: 130 EGGRQLIIGTPGRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDEVEALIHALPYRRQ 189

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQL 238
           T+LFSATM   +++++ N++  P  I +   S    E I+   V      SK+ AL   +
Sbjct: 190 TMLFSATMPAGVKQLAGNYMNQPVDIVIKGASPIPLEQIQQVVVEC-TDRSKQDALRAMI 248

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +    +   IIFC  K+    L  +L   G+    +HG++ Q  R  ++  F+E  +QL
Sbjct: 249 EEHNPFLA--IIFCRTKRRATTLNEALLAHGYQSDELHGDLSQAKREAVMKRFREAKLQL 306

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  V HVFN+D+P+  E+YIHRIGRTGRAG  G A T  A +D+  + 
Sbjct: 307 LVATDVAARGLDVEGVTHVFNYDMPHDVESYIHRIGRTGRAGGSGMAITFAAGKDLNDLQ 366

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IE+ I +++  +  D ++                R+++    + TG  ++ +N SS +S
Sbjct: 367 RIEEGISQRLKRVRYDSAA-------------GSLRESSGGSGRDTGRPKKARNVSSLES 413


>gi|27468597|ref|NP_765234.1| ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228]
 gi|81843521|sp|Q8CRP6|Y1679_STAES RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SE_1679
 gi|27316144|gb|AAO05278.1|AE016749_224 ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228]
          Length = 509

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 156/412 (37%), Positives = 233/412 (56%), Gaps = 25/412 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S K V  +   G+ +PTPIQ  +IP  L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  G+  V+   +LIL PTRELA QVA+   ++ K   + V  + GG+P E Q K L+R
Sbjct: 63  KV-VGQQGVQ---SLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKVLKR 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180
           G  +++ TPGR++DH NR  L    I  L++DEAD M++MGFI  ++ I   +P   RQT
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +Q++ + F++ PK I+      +   I+  +  T  +  +K       L 
Sbjct: 179 MLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYY--TIVKELEKFDTFTNFLD 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++V
Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  I
Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK----------IDIAQHNHARKNNPIPQK 402
           E       D  N  + +L PP  K           D  Q+  +R+N P  Q+
Sbjct: 356 E-------DVNNRRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPRLQR 400


>gi|300692366|ref|YP_003753361.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Ralstonia
           solanacearum PSI07]
 gi|299079426|emb|CBJ52099.2| ATP-dependent RNA helicase, stimulated by 23S rRNA [Ralstonia
           solanacearum PSI07]
          Length = 471

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 149/392 (38%), Positives = 221/392 (56%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P V+  ++  GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 16  FSTLALAPAVLANLVQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    ++L PTRELA QV     +  +   N+ V  L GG P   Q   LE 
Sbjct: 76  LDARRFDVQ---AMVLCPTRELADQVTQEIRRLARAEENVKVLTLCGGTPMRPQTASLEH 132

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH  RG L +  ++ LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 133 GAHVVVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPPERQTL 192

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S   L+NPK +++      ++  +  +  T  +      LL +  + 
Sbjct: 193 LFSATYPDGIAKLSRQILRNPKEVKLEERHDDSKIRQRFYEVTDDERLHAVGLLLKHYRP 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+     FCN K+   NL   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 253 VSTLA----FCNTKQQCRNLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + +IE
Sbjct: 309 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGSIE 368

Query: 362 KLIEKKVDWL------NGDLSSLNPPLEKIDI 387
           + + ++V+W        G  + L PP+E + I
Sbjct: 369 QALGREVEWHRLAELDTGSDAPLLPPMETLQI 400


>gi|332667550|ref|YP_004450338.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332336364|gb|AEE53465.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 516

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 147/374 (39%), Positives = 233/374 (62%), Gaps = 8/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F++L LS +V  A+ D G+ + TPIQ + IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 4   LNFSELALSQEVQSAINDMGFAEATPIQSEAIPHLLNGKDLIGQAQTGTGKTAAFGIPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
             ++      R    ++L PTRELA QVA+   K  K    L ++ + GG   + Q K+L
Sbjct: 64  ESID---CSTREVAAIVLCPTRELAVQVAEELRKLAKYKKGLFISTIYGGDSIQRQLKEL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  V++ TPGR++DH  R  L +++I++ V+DEAD ML+MGF   I+N+ + +P TRQ
Sbjct: 121 KAGPQVVVGTPGRVMDHLQRKTLRLDHIQMAVLDEADEMLNMGFREDIENVLNQMPETRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + ++++ F ++P  ++V     T  +I+  +     Q   K A++ +L+
Sbjct: 181 TVLFSATMPRPILEIAKRFQKSPIHVKVVKEELTNASIDQIYYDIPVQ--AKEAVIARLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D ++  I+F N KK V +L   L   G S  AIHG+++Q  R  +L+ F+ G + ++
Sbjct: 239 EYYD-LQRVIVFANMKKTVDDLTEGLNLLGISAKAIHGDLNQNQRNAVLTAFRGGAVNVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHID 358
           VA+D+AARG+D+  V  VFN+D+P  AE Y+HRIGRTGRAG+ GK+F+ V  + D   + 
Sbjct: 298 VATDVAARGIDVSSVDGVFNYDLPYDAEYYVHRIGRTGRAGKLGKSFSFVTGRNDRYRLR 357

Query: 359 AIEKLIEKKVDWLN 372
            IE   + ++D  N
Sbjct: 358 DIEDFSKVRIDRHN 371


>gi|325275059|ref|ZP_08141046.1| ATP-dependent RNA helicase RhlB [Pseudomonas sp. TJI-51]
 gi|324099808|gb|EGB97667.1| ATP-dependent RNA helicase RhlB [Pseudomonas sp. TJI-51]
          Length = 483

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 144/373 (38%), Positives = 227/373 (60%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS +V+ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ +++ 
Sbjct: 96  FHDFKLSSEVMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQ 155

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L++  A     +  PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K 
Sbjct: 156 LQQTPAPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKA 215

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 216 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 275

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T+++  +++ +  NP  +E+   +  +ET+E    A     S K  LL
Sbjct: 276 SERQTLLFSATFTEDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAG--SDKYKLL 333

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ +Q+  +  ++F N+K  V  +   L + G +   + G++ Q  R++ L NF+EG 
Sbjct: 334 YNLV-TQNRWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLENFREGR 392

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG +G + +   ++D  
Sbjct: 393 ITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTNGVSISFAGEDDSY 452

Query: 356 HIDAIEKLIEKKV 368
            + AIE+L+ +K+
Sbjct: 453 QLPAIEELLGRKI 465


>gi|229065471|ref|ZP_04200719.1| ATP-dependent RNA helicase [Bacillus cereus AH603]
 gi|228715789|gb|EEL67561.1| ATP-dependent RNA helicase [Bacillus cereus AH603]
          Length = 450

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 153/423 (36%), Positives = 244/423 (57%), Gaps = 28/423 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 66  KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ +++ P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMEEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K  V  L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ-------HNHARKNNPIPQKSTGFDRRKKNY 413
           EK              +L  P+++  I Q        N      P P+KS  + +R    
Sbjct: 360 EK--------------TLGAPIQREIIEQPMIKNVDENGKPVQKPAPKKSGQYRQRDSRE 405

Query: 414 SSQ 416
            S+
Sbjct: 406 GSR 408


>gi|298345284|ref|YP_003717971.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 43063]
 gi|315655703|ref|ZP_07908601.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 51333]
 gi|298235345|gb|ADI66477.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 43063]
 gi|315489767|gb|EFU79394.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 51333]
          Length = 525

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 218/371 (58%), Gaps = 9/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  + P++V A+ D G + P PIQ  T+P+ L R D+ G A+TGTGKT  F +P+L  
Sbjct: 28  FADFDVEPEIVAALRDQGIIHPFPIQALTLPVALNRQDIIGQAKTGTGKTLGFAIPILHD 87

Query: 63  L----EKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    ++G   +     P+ L++ PTRELA QVA        +    +  + GG+ F++Q
Sbjct: 88  IIGPGDEGWDEIPDSGFPQALVILPTRELAKQVAAEIRAAATHRVARIIEIYGGVGFDSQ 147

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L +G +V++ TPGR++D  N+G L +  I  LV+DEAD MLDMGF+P ++ + S +P
Sbjct: 148 IEALRKGVEVVVGTPGRLIDLMNQGTLKLGRIRTLVMDEADEMLDMGFLPDVEKLISQIP 207

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234
             R T+LFSATM   +  ++  ++  P  I    P+ +++T+       Y  +S  K  +
Sbjct: 208 PHRHTMLFSATMPGPVVALARRYMYQPTHIRATDPTDSSQTVRQVKQVVYRVHSLNKTEV 267

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + ++LQ+++     IIF   K+    L   L ++GF+  AIHG++ Q +R + L  F+ G
Sbjct: 268 IARILQARNRGLT-IIFTRTKRTCQRLSDELAERGFATGAIHGDLGQNARERALRAFRHG 326

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N++ P   + YIHRIGRT RAG  G A T +  ED+
Sbjct: 327 KVDVLVATDVAARGIDVDDVTHVINYECPEDDKTYIHRIGRTARAGNKGSAITFIDWEDL 386

Query: 355 KHIDAIEKLIE 365
                I + ++
Sbjct: 387 TRWRVINRTLD 397


>gi|303242080|ref|ZP_07328571.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302590374|gb|EFL60131.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 499

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 144/362 (39%), Positives = 220/362 (60%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+SP ++ A+ + G+  PT +Q K IP +L   D+  +++TG+GKTA F + ML +
Sbjct: 5   FNDLGISPPILKALEEMGFEAPTEVQSKAIPHILNHEDLIVMSKTGSGKTAVFGVSMLQM 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    +   P+ LIL PTRELA QV +  +K  K+ +     + G      + + L RG
Sbjct: 65  ID---PKADGPQGLILTPTRELAVQVDNELKKMAKHLDHHTTAVYGQHSMNVEIQALRRG 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR  DH + G L+  NI  L++DEADRMLDMGF+  +  I   +P  R TLL
Sbjct: 122 ISIVTGTPGRAYDHIHTGNLITKNIRFLILDEADRMLDMGFLDQVVKIIRTLPKDRVTLL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  E++++ + +++ P  IE+ + + T +TIE  +     Q  +K   L  LL  +
Sbjct: 182 FSATIPPEIRRICKEYMKQPLTIEIKSQTKTVDTIEQIYYRIDNQ--QKNTELNHLLLIE 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              ++ +IFCN K  V  +   L ++G++  ++HG+I Q  RMK +  FK+G   L+VA+
Sbjct: 240 RP-ESCMIFCNTKIAVDKVQSFLSRKGYACQSLHGDIPQARRMKTIQQFKQGDFHLLVAT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+ I ++  V N+DVP   +NY+HRIGRTGRAG  G+A TLV  EDI  + AIE+
Sbjct: 299 DVAARGIHIDNLSLVINYDVPLEKDNYVHRIGRTGRAGNGGRALTLVTSEDIMSLYAIEE 358

Query: 363 LI 364
            I
Sbjct: 359 HI 360


>gi|258648442|ref|ZP_05735911.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           tannerae ATCC 51259]
 gi|260851194|gb|EEX71063.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           tannerae ATCC 51259]
          Length = 484

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 149/369 (40%), Positives = 234/369 (63%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL LS  V+ A+ D  + K TP+Q + IP +L+  DV GIAQTGTGKTA+++LP+LT+
Sbjct: 9   FEDLALSDDVLDALYDMRFEKCTPVQARCIPPILEGRDVIGIAQTGTGKTAAYLLPLLTL 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNKKL 119
           L++          L++ PTRELA Q+    + +G   ++    + GG   + +E + K L
Sbjct: 69  LKQESHPTDAVNCLVMAPTRELAQQIDQALQGFGYYVDVNGVAVYGGNDGVRYEQERKSL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGAD++I TPGR+L H + G   ++    LV+DEADRMLDMGF   I  I   +P  RQ
Sbjct: 129 KRGADIVIATPGRLLTHLDLGTFDLSRTTHLVLDEADRMLDMGFSDDILKIVKHLPEQRQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  ++++++   + NP+ + +   S  AE I         + + K A+++ L 
Sbjct: 189 TILFSATMPAKIRELAHKIMHNPEEVSIAI-SKPAENIRQSLF--ICKENDKTAIIKHLF 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  IIFC  K+ V  L  +L+++G++V A+H +++Q+ R +++  FK G I ++
Sbjct: 246 ADQKPERV-IIFCGSKQKVKELNITLKRKGYNVEAMHSDLEQKQRDEVMLGFKAGRIDIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARG+DI D+  V N+DVP  AE+Y+HRIGRT RAGR+G+A TLV ++D   +  
Sbjct: 305 VATDIVARGIDIDDITLVINYDVPRDAEDYVHRIGRTARAGRNGRAVTLVGEKDRYALRN 364

Query: 360 IEKLIEKKV 368
           IE+L++K++
Sbjct: 365 IEQLLDKEL 373


>gi|78355199|ref|YP_386648.1| DEAD/DEAH box helicase-like [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217604|gb|ABB36953.1| DEAD/DEAH box helicase-like protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 572

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 143/369 (38%), Positives = 229/369 (62%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL LS +V+ A+ D G+ + +PIQ  +IP +L   DV G AQTGTGKTA+F +P   I
Sbjct: 51  FADLPLSKEVLRAIQDMGFEEASPIQTMSIPHILAGKDVVGQAQTGTGKTAAFGIP---I 107

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           LE+   R +  + ++L PTRELA QVA+      ++   ++V  + GG P E Q + L R
Sbjct: 108 LERIDPRDKATQAVVLCPTRELAIQVAEEVTTLARHKRGISVVPVYGGQPIERQVRALRR 167

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH +RG + +N ++++V+DEAD MLDMGF   I+ I   +    QT+
Sbjct: 168 GAQVIVGTPGRVMDHLDRGTMDINTVKMVVLDEADEMLDMGFRDDIEFILGKMEQEVQTV 227

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
            FSATM   +  +++ +L+ P+ ++V     T  +IE  +  V  + +    C +L    
Sbjct: 228 FFSATMPRAILDMAQRYLKEPEFLKVTQKLLTVPSIEQIYFEVRPFQKLESLCRVLDVY- 286

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  I+FC+ K  V  L  +L+ +G+    +HGN++Q  R ++++ F++G I ++
Sbjct: 287 ----NPKLTIVFCSTKVGVDELATNLQARGYDADGLHGNLNQAQRDRVMNRFRKGNIDIL 342

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V  V N+D+PN  E+Y+HRIGRTGRAGR G+AFT V+  +   +  
Sbjct: 343 VATDVAARGIDVENVEAVVNYDIPNDVESYVHRIGRTGRAGRAGRAFTFVSGREFYKLRD 402

Query: 360 IEKLIEKKV 368
           I++  + ++
Sbjct: 403 IKRFTKAQI 411


>gi|282866591|ref|ZP_06275633.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
 gi|282558493|gb|EFB64053.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
          Length = 537

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 143/373 (38%), Positives = 221/373 (59%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F DLG+  +   A+   G   P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L  
Sbjct: 21  FRDLGILTETAEALEAVGITSPFPIQEMTLPVALSGSDVIGQAKTGTGKTLGFGLPLLER 80

Query: 61  -TI---LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            T+   +E GRA        P+ LI+ PTREL  QV ++    GK  N+ V  + GG  +
Sbjct: 81  VTVPADVEAGRATPDRLTDAPQALIVVPTRELCQQVTNDLLTAGKVRNVRVLAIYGGRAY 140

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E Q + L++G DV++ TPGR+LD   + KL +++I +LV+DEAD MLD+GF+P ++ I +
Sbjct: 141 EPQVEALKKGVDVVVGTPGRLLDLAGQRKLDLSHIRVLVLDEADEMLDLGFLPDVERIIT 200

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KK 231
           ++P  RQT+LFSATM   +  ++  ++  P  I   +P     T+++     Y  +S  K
Sbjct: 201 MLPAKRQTMLFSATMPGAVISLARRYMSQPTHINATSPDDEGTTVKNTTQFVYRAHSMDK 260

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             ++ ++LQ++ +    +IFC  K+   ++   LE++GF+  A+HG++ Q +R + L  F
Sbjct: 261 PEMVSRILQAE-SRGLAMIFCRTKRTAADIAEQLERRGFASGAVHGDLGQGAREQALRAF 319

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAG  G A TLV  
Sbjct: 320 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLVDW 379

Query: 352 EDIKHIDAIEKLI 364
           +DI     I K +
Sbjct: 380 DDIPRWQLINKAL 392


>gi|330448082|ref|ZP_08311730.1| csdA, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492273|dbj|GAA06227.1| csdA, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 627

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 143/369 (38%), Positives = 223/369 (60%), Gaps = 7/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L L+  ++ A+ + G+V PTPIQ  +IPL+L   D  G AQTGTGKTA+F LP+L 
Sbjct: 7   EFRQLDLADTLLSALDNMGFVAPTPIQAASIPLLLTGVDALGKAQTGTGKTAAFSLPVLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            +   + +   P+ +++ PTRELA QVA   +  G+N   L V  + GG     Q + L+
Sbjct: 67  KVNLSQHK---PQAIVMAPTRELAIQVAAEMKTLGQNIKGLKVLEIYGGASIVDQMRALK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ D  +R +L ++ +   V+DEAD ML MGF+  +  I    P + Q 
Sbjct: 124 NGAHIVVGTPGRVKDLISRKQLHLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPESAQR 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++++ + FL+NP+RI+V   + T   +E  F        +K   + +LL+
Sbjct: 184 VLFSATMPPIVKEIVDRFLRNPERIDVAGENRTVSKVEQQFWVVKG--VEKDEAMSRLLE 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++DT    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K G I ++V
Sbjct: 242 TEDT-DASIVFVRTRQDTERLADWLCSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  I
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRTGKAILLVRTNQIRMLRTI 360

Query: 361 EKLIEKKVD 369
           E++ + +++
Sbjct: 361 ERVTKSRME 369


>gi|262203393|ref|YP_003274601.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
 gi|262086740|gb|ACY22708.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
           43247]
          Length = 543

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 160/435 (36%), Positives = 234/435 (53%), Gaps = 35/435 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+  ++V A+ D G      IQ  T+PL +   D+ G A+TG GKT  F +P+L  
Sbjct: 27  FAELGVDDRIVAALADDGKTHTFAIQELTLPLAMGGDDLIGQARTGMGKTFGFGVPLLHR 86

Query: 63  L----EKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-----------LTVALL 106
           L    E G RA    PR LI+ PTREL  QV  + E   K              L +  +
Sbjct: 87  LAHAEESGLRALDNTPRALIIVPTRELCIQVTGDLEVAAKKLTDITLADGTVRPLKITSI 146

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG P+E+Q   L  G DV++ TPGR+LD   +G L++  + +LV+DEAD MLD+GF+P 
Sbjct: 147 YGGRPYESQIADLRAGVDVVVGTPGRLLDLAQQGHLILGKVAVLVLDEADEMLDLGFLPD 206

Query: 167 IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA---ETIEHCFVA 223
           I+ I S +P  RQT+LFSATM   +  ++  FL  P  I       +A    T ++ +  
Sbjct: 207 IERIMSALPTPRQTMLFSATMPGPIVTLARTFLHRPTHIRAEHADDSAIHERTTQYVY-- 264

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
             A    K  L+ ++LQ++      +IF   K+    +   L ++GF V A+HG++ Q +
Sbjct: 265 -RAHALDKAELVARILQAEGRGAT-MIFTRTKRTAQKVADDLAERGFKVGAVHGDLGQVA 322

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R K L  F++GTI ++VA+D+AARG+DI DV HV N+ +P   +NY+HRIGRTGRAGR G
Sbjct: 323 REKALKRFRDGTIDVLVATDVAARGIDIDDVTHVINYQIPEDDKNYVHRIGRTGRAGRTG 382

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
            A TLV  +++   + I   +             L  P      +   H R +  IP+ +
Sbjct: 383 IAVTLVDWDELHRWELINNAL------------GLGIPEPAETYSTSEHLRTDLSIPEST 430

Query: 404 TGFDRRKKNYSSQKS 418
           TG     K  SS+K+
Sbjct: 431 TGRIVAPKRESSEKT 445


>gi|15896262|ref|NP_349611.1| ATP-dependent RNA [Clostridium acetobutylicum ATCC 824]
 gi|15026068|gb|AAK80951.1|AE007798_3 ATP-dependent RNA helicase (superfamily II), YDBR B.subtilis
           ortholog [Clostridium acetobutylicum ATCC 824]
 gi|325510417|gb|ADZ22053.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
           acetobutylicum EA 2018]
          Length = 528

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 143/369 (38%), Positives = 223/369 (60%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L+  V+ A+ D G+ +P+ IQ + IP+V+  +D+ G AQTGTGKT +F  P+++ 
Sbjct: 6   FSDLKLNSSVLKAIDDMGFEEPSKIQAEAIPVVIDGYDMIGQAQTGTGKTVAFGAPIISK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + K        + +IL PTRELA Q+ D   +  K   + V  + GG   E Q + ++RG
Sbjct: 66  I-KDIDEKEGVQAIILTPTRELAIQITDELTRLSKYARVRVLPIYGGQSIERQMRAIKRG 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGRI+DH  R  + ++ ++ LV+DEAD MLDMGFI  I+ I   +   RQT+L
Sbjct: 125 VDVIVATPGRIMDHIKRKTVKLDKVKFLVLDEADEMLDMGFIDDIEGIIKNISGDRQTML 184

Query: 183 FSATMTDELQKVSENFLQNP-KRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           FSATM   ++K++ N+++   K I +   S T E I+  +  V    ++   C ++   +
Sbjct: 185 FSATMPAPIKKLASNYMKKEVKHIAIIKNSLTVERIQQFYFEVKNKDKFEALCRIID--V 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +T    IIFC  K+ V  L  S++ +G++V  +HG++ Q  R+  L  FKE  I  +
Sbjct: 243 EEPETT---IIFCRTKRGVDELVESMQFRGYNVEGMHGDMSQNQRINTLKKFKENNIDFL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V HV N+D+P   E+Y+HRIGRTGRA   G A++LV   +   I  
Sbjct: 300 VATDVAARGIDVHNVSHVINYDIPQDMESYVHRIGRTGRANAEGIAYSLVTPREYVMIKQ 359

Query: 360 IEKLIEKKV 368
           IEK  + K+
Sbjct: 360 IEKFTKSKI 368


>gi|298571703|gb|ADI87855.1| hypothetical protein AKSOIL_0347 [uncultured bacterium Ak20-3]
          Length = 527

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 145/372 (38%), Positives = 218/372 (58%), Gaps = 8/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D     K+   + D G+  PTPIQ++ IP+VL+  D+   AQTGTGKTA+F LP+L 
Sbjct: 32  NFKDFPFDMKLQQVIADEGFSIPTPIQVRAIPIVLEGKDIIACAQTGTGKTAAFALPILH 91

Query: 62  IL----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L    +  + R   P+ L+L PTRELA QV + F  +G N  +    +IGG+    Q  
Sbjct: 92  KLVQDAQTEKQRSYHPKVLVLVPTRELALQVQETFAAFGHNLGVNSIAIIGGVSVGQQMV 151

Query: 118 KLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            L R +  V++ TPGR+LD   +G + +++I  L++DEADRMLDMGFIP  + I   +P 
Sbjct: 152 NLRRRSPQVVVATPGRLLDILEQGGINLSSIHTLILDEADRMLDMGFIPDTKRIVKAIPK 211

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ+L+FSAT++ E+  +S+  +  P  I V    ++AE IE    +       K ALL 
Sbjct: 212 ERQSLMFSATISSEVNALSKQIMNTPVHISVAPKRASAEGIEQLLYSVPG--DNKRALLF 269

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL++ D M   IIF   K     L  SL ++G     IH    Q +R  +  +F+ G +
Sbjct: 270 HLLEN-DEMNRVIIFTRTKFGASKLSDSLIREGIRSKVIHSGKSQAARQSVWEHFRSGKL 328

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+DLA+RG+D+  + HV N+D+P+ AE YIHRIGRTGRA + G A +  + +  + 
Sbjct: 329 RVLVATDLASRGIDVDGISHVVNYDLPDCAETYIHRIGRTGRANKTGIALSFCSPDQRRL 388

Query: 357 IDAIEKLIEKKV 368
           + AIE+ + K +
Sbjct: 389 LTAIERHLGKTL 400


>gi|229011722|ref|ZP_04168904.1| ATP-dependent RNA helicase [Bacillus mycoides DSM 2048]
 gi|229167295|ref|ZP_04295034.1| ATP-dependent RNA helicase [Bacillus cereus AH621]
 gi|228616171|gb|EEK73257.1| ATP-dependent RNA helicase [Bacillus cereus AH621]
 gi|228749519|gb|EEL99362.1| ATP-dependent RNA helicase [Bacillus mycoides DSM 2048]
          Length = 450

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 153/423 (36%), Positives = 244/423 (57%), Gaps = 28/423 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 66  KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ +++ P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMEEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K  V  L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ-------HNHARKNNPIPQKSTGFDRRKKNY 413
           EK              +L  P+++  I Q        N      P P+KS  + +R    
Sbjct: 360 EK--------------TLGAPIQRQIIEQPMIKNVDENGKPVQKPAPKKSGQYRQRDSRE 405

Query: 414 SSQ 416
            S+
Sbjct: 406 GSR 408


>gi|163755968|ref|ZP_02163085.1| putative ATP-dependent RNA helicase [Kordia algicida OT-1]
 gi|161324139|gb|EDP95471.1| putative ATP-dependent RNA helicase [Kordia algicida OT-1]
          Length = 411

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 146/368 (39%), Positives = 229/368 (62%), Gaps = 8/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  ++ A+ +  Y +PT +Q + IP++L + D+   AQTGTGKTA++ LP+L
Sbjct: 1   MQFKELKLNKPIIRALFEKNYEEPTLVQERAIPVILTKKDIIVSAQTGTGKTAAYALPIL 60

Query: 61  TIL---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L   +    + +  + L++ PTRELA Q+ +NF+ Y K  NL   ++ GG   E Q  
Sbjct: 61  QLLFDKQDAPKKGKKIKALVVCPTRELAIQIEENFQTYSKYTNLRTGVIFGGASIEPQKD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+L+ TPGR+LD   +  + ++ +EILV+DEAD MLDMGFI  ++ I  L P  
Sbjct: 121 MLKKGIDILVATPGRLLDLHKQDVVNLDYVEILVLDEADLMLDMGFIDDVKKIERLCPDG 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +Q LLFSATM  +++ ++ + L++P  +EV+  SS A+ ++   V  Y    KK  L   
Sbjct: 181 KQILLFSATMPYKVEHLANSILKSPAYVEVSPTSSAAKGVDQ--VLYYVPKPKKIELCLH 238

Query: 238 LLQSQDTMK-NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           LL  ++T+K N IIF   K  V  L  +L +  + V +IHG+  Q  R + L+ FK+G  
Sbjct: 239 LL--RNTIKGNVIIFRRTKYGVDKLEKTLLRNNYKVASIHGDKSQNLRQEALNAFKKGEA 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++ +A+D+AARG+DI +V  V NFD+PN +E Y+HRIGRT RAG  G A +  + ++  +
Sbjct: 297 KIFIATDVAARGIDIKNVDAVINFDIPNVSETYVHRIGRTARAGASGMALSFCSADEKNY 356

Query: 357 IDAIEKLI 364
           I  I++LI
Sbjct: 357 IKDIQQLI 364


>gi|153938870|ref|YP_001392080.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum F str.
           Langeland]
 gi|152934766|gb|ABS40264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. Langeland]
 gi|295320089|gb|ADG00467.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. 230613]
          Length = 524

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 142/384 (36%), Positives = 235/384 (61%), Gaps = 7/384 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L L+  V+ A+   G+  P+ IQ K+IP+VL+  DV   AQTGTGKT +F  P+++
Sbjct: 5   NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   + + +  + L+L PTRELA Q+ D  ++  K     V  + GG   E Q K ++ 
Sbjct: 65  AL-CDKEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKS 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR+LDH NR  L +  I+ L++DEAD ML+MGFI  I+ I       +QT+
Sbjct: 124 GVDIVVGTPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183

Query: 182 LFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSATM   ++K++ N+++ + + I +   S T + I   + A   +   K   + +++ 
Sbjct: 184 LFSATMPAPIKKLALNYMKKDVEHIAIVKKSLTVDKIAQHYFA--VKNKDKLEAICRIID 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++  ++ IIFC  K+ V  L  +++ +G++V  +HG++ Q  R+  L  FK+ T+  +V
Sbjct: 242 SEEP-ESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HV N+D+P  AE+Y+HRIGRTGRA + G A++LV   ++  I  I
Sbjct: 301 ATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E++ + K+     +L +L   LEK
Sbjct: 361 ERITKSKI--TKKELPTLEDILEK 382


>gi|299538292|ref|ZP_07051577.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
 gi|298726494|gb|EFI67084.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
          Length = 507

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 144/380 (37%), Positives = 229/380 (60%), Gaps = 13/380 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L +S   + +V   G+ + TPIQ  TI   ++  DV G AQTGTGKTA+F +P++ 
Sbjct: 3   NFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++    L++ PTRELA QV++   K G +  + +  + GG     Q + L+ 
Sbjct: 63  KIDPKNPNIQ---ALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRALKN 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI+DH NR  L + +++ LV+DEAD ML+MGFI  I +I   VP  RQTL
Sbjct: 120 KPQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPSERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K++E F+++P+ +++     T + I+  FV +  +  +K  +L +LL  
Sbjct: 180 LFSATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAER--EKFDVLSRLLNV 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  IIF   K+ V  L  +L  +G+    IHG++ Q  R+ +L  FKE  I ++VA
Sbjct: 238 HQP-ELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLRIVE 356

Query: 362 KLIEKKVDWLNGDLSSLNPP 381
           +  +K+       ++ L PP
Sbjct: 357 ETTKKR-------MTPLRPP 369


>gi|297589855|ref|ZP_06948495.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|297576983|gb|EFH95697.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus MN8]
          Length = 517

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 149/384 (38%), Positives = 225/384 (58%), Gaps = 15/384 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S   V ++   G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 14  NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  G+  V+   +LIL PTRELA QVA+   ++ +   + V  + GG+P E Q K L++
Sbjct: 74  KV-VGKQGVQ---SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQT 180
           G  +++ TPGR++DH NR  L  + I  L++DEAD M++MGFI  ++ I   +P   RQT
Sbjct: 130 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +Q + + F+++PK I+      +   IE  +  T  +  +K       L 
Sbjct: 190 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNFLD 247

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++V
Sbjct: 248 VHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  I
Sbjct: 307 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 366

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E    +K       +S+L PP  K
Sbjct: 367 EDANGRK-------MSALRPPHRK 383


>gi|228994170|ref|ZP_04154070.1| ATP-dependent RNA helicase dbpA [Bacillus pseudomycoides DSM 12442]
 gi|228765622|gb|EEM14276.1| ATP-dependent RNA helicase dbpA [Bacillus pseudomycoides DSM 12442]
          Length = 481

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 223/364 (61%), Gaps = 10/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS ++V A+    Y +PT +Q K IP+ L++ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FKEYALSKEIVRALTSLKYEQPTEVQGKVIPVALEKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ LIL PTRELAAQV ++    G+   +    + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALILTPTRELAAQVKEDITNIGRFKRIKATAVYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G   +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTDRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL--LQ 240
           FSAT+ ++++ +S  ++++P  IE+     T + IEH  +    +  +K +LLQ +  L+
Sbjct: 183 FSATLPEDVENLSHTYMKSPTHIEIKASGITTDKIEHILLEVREE--EKFSLLQDITTLE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D+    IIFC  ++NV ++   L++ G+    IHG + Q  R  ++++FK G  + +V
Sbjct: 241 NPDSC---IIFCRTQENVDHVFRQLKRSGYPCDKIHGGMIQEDRFAVMNDFKRGKFRYLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T V   + + +  I
Sbjct: 298 ATDVAARGIDIENITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFVTPYEERFLVEI 357

Query: 361 EKLI 364
           E+ I
Sbjct: 358 EEYI 361


>gi|262164855|ref|ZP_06032593.1| cold-shock DEAD-box protein A [Vibrio mimicus VM223]
 gi|262027235|gb|EEY45902.1| cold-shock DEAD-box protein A [Vibrio mimicus VM223]
          Length = 643

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 140/370 (37%), Positives = 221/370 (59%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N   L V  + GG     Q + L
Sbjct: 66  NKLNLSQHK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 123 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL+NP+ ++V   + T   +E  +        +K   + +LL
Sbjct: 183 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVD 369
           IE++    ++
Sbjct: 360 IERVTRSSME 369


>gi|291166137|gb|EFE28183.1| ATP-dependent RNA helicase DeaD [Filifactor alocis ATCC 35896]
          Length = 539

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 144/367 (39%), Positives = 227/367 (61%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F +  +S ++  A+   G+ + T IQ   IP+  +  D+ G +QTGTGKT +F +P+L  
Sbjct: 4   FTEFNISKEIQMALEQLGFEEATIIQELAIPIATEGKDLIGQSQTGTGKTFAFGIPILDN 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL+    +++    L++ PTRELA QV++ F+K      +    + GG   + Q K L++
Sbjct: 64  ILQNNNHQIQ---ALVICPTRELAVQVSNEFDKLTAFTKIRNIAVYGGEYIDKQIKGLKK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILDH  R  + ++++  +V+DEAD MLDMGFI  I+NI       RQT+
Sbjct: 121 KVQIVIGTPGRILDHIERKTIKLDHVRFVVLDEADEMLDMGFIEDIENILRETSEERQTM 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+  +S+ +L+NP+ I V   + T + IE  ++    + + K  +L ++LQ 
Sbjct: 181 LFSATMPAEILSLSKKYLKNPEMIRVKNKTMTVDQIEQIYMKV--KNADKSEVLSRILQL 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + + K  IIFCN KK V  L   ++ +G++V A+HG++ Q+ R  +L+ F+EG I +++A
Sbjct: 239 ESS-KKAIIFCNTKKMVDELVVDMQNRGYAVEALHGDLKQQKRDMVLNRFREGQISMLIA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI DV  V N+D+P   E Y+HRIGRTGRAG  GK+++     DI+ +  IE
Sbjct: 298 TDVAARGLDIRDVDLVINYDLPIEEEQYVHRIGRTGRAGASGKSYSFAYGRDIERLRRIE 357

Query: 362 KLIEKKV 368
           K  + K+
Sbjct: 358 KYAKCKI 364


>gi|170725054|ref|YP_001759080.1| ATP-dependent RNA helicase DbpA [Shewanella woodyi ATCC 51908]
 gi|169810401|gb|ACA84985.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 469

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 145/369 (39%), Positives = 224/369 (60%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P+++  +   GY   TPIQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 12  MSFSTLTLKPELLDNLKTMGYDSMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLL 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             L   R R++   +L+L PTRELA QVA       +  +N+ V  L GG+P   Q   L
Sbjct: 72  HKLNVKRFRIQ---SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH +R +L + ++  LV+DEADRML+MGF+P +  I + +P  RQ
Sbjct: 129 EHGAHIIVGTPGRIIDHLSRERLSLEDVNTLVLDEADRMLEMGFLPDLDYIMAQMPRERQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   ++QK++E  +  P  ++V T +  + TI+  F    +   ++ AL   LL
Sbjct: 189 TLLFSATFPKQIQKIAEEIMYEPVMVKV-TSTHDSNTIDQHFYELESNKDRQKALRLLLL 247

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q +   ++ ++FCN K+   ++  +L   GFSV A+HG+++QR R   L  F   +  +M
Sbjct: 248 QHRP--ESAVVFCNTKRETKDVAATLANDGFSVVALHGDLEQRDRDITLMQFANKSASIM 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N++     E +IHRIGRTGRAG  G A+T    ED   +  
Sbjct: 306 VATDVAARGLDIEALDMVVNYEFAYDTEVHIHRIGRTGRAGSKGAAYTFYNYEDDYKVKL 365

Query: 360 IEKLIEKKV 368
           +E+ +++++
Sbjct: 366 LEEYLDREI 374


>gi|258624003|ref|ZP_05718956.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM603]
 gi|258583797|gb|EEW08593.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM603]
          Length = 663

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 140/370 (37%), Positives = 221/370 (59%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 26  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N   L V  + GG     Q + L
Sbjct: 86  NKLNLSQHK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 142

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 143 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 202

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL+NP+ ++V   + T   +E  +        +K   + +LL
Sbjct: 203 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 261 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 320 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 379

Query: 360 IEKLIEKKVD 369
           IE++    ++
Sbjct: 380 IERVTRSSME 389


>gi|242371572|ref|ZP_04817146.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
 gi|242350724|gb|EES42325.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
          Length = 525

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 148/384 (38%), Positives = 227/384 (59%), Gaps = 15/384 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S K V  +   G+ +PTPIQ  +IP  L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 19  NFKELGISDKTVQTLESMGFKEPTPIQKDSIPYALKGDDILGQAQTGTGKTGAFGIPLIE 78

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  G+  V+   +LIL PTRELA QVA+   ++ K   + V  + GG+P + Q K L+R
Sbjct: 79  KV-VGQEGVQ---SLILAPTRELAMQVAEQLREFSKGQRVQVVTVFGGMPIDRQIKALKR 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQT 180
           G  +++ TPGR++DH NR  L  ++I  L++DEAD M++MGFI  ++ I   +P   RQT
Sbjct: 135 GPQIVVGTPGRVIDHLNRRTLKTHDIHTLILDEADEMMNMGFIDDMRFIMDKIPADQRQT 194

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +Q++ + F++ PK I+      +   IE  +  T  +  +K       L 
Sbjct: 195 MLFSATMPKAIQELVQQFMKTPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNFLD 252

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++V
Sbjct: 253 VHQP-ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILV 311

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  I
Sbjct: 312 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 371

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E +  ++       +++L PP  K
Sbjct: 372 EDVNGRR-------MNALRPPHRK 388


>gi|82751683|ref|YP_417424.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122]
 gi|123548216|sp|Q2YUH3|Y1965_STAAB RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAB1965c
 gi|82657214|emb|CAI81654.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122]
          Length = 506

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 225/386 (58%), Gaps = 19/386 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
           +F +LG+S   V ++   G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + ++G       ++LIL PTRELA QVA+   ++ +   + V  + GG+P E Q K L
Sbjct: 63  KVVWKQG------VQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKAL 116

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTR 178
           ++G  +++ TPGR++DH NR  L  + I  L++DEAD M++MGFI  ++ I   +P   R
Sbjct: 117 KKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQR 176

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATM   +Q + + F+++PK I+      +   IE  +  T  +  +K       
Sbjct: 177 QTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNF 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L      +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I +
Sbjct: 235 LDVHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 293

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I 
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
            IE    +K       +S+L PP  K
Sbjct: 354 QIEDANGRK-------MSALRPPHRK 372


>gi|269796056|ref|YP_003315511.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269098241|gb|ACZ22677.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542]
          Length = 593

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 137/371 (36%), Positives = 217/371 (58%), Gaps = 9/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D G+ P++V A+ DAG V P PIQ  T+P+ +  HD+ G A+TGTGKT  F +P+L  
Sbjct: 16  FGDFGVRPEIVQALADAGIVAPFPIQAMTLPVAMAGHDIIGQAKTGTGKTLGFGVPLLHR 75

Query: 63  L----EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    E G   +  P   + L++ PTRELA QVA + E      ++ +  L GG  +E Q
Sbjct: 76  VVAPGEPGYDELPAPGKPQALVIVPTRELAVQVAKDLEAASTKRSVRIVQLYGGRAYEPQ 135

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K LE+G +V++ TPGR++D   +G L +   + +V+DEAD MLD+GF+P ++ + +  P
Sbjct: 136 VKALEQGVEVVVGTPGRMIDLLKQGFLDLTRAQCVVLDEADEMLDLGFLPDVEKLLARTP 195

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234
             R T+LFSATM   +  ++  +++ P  I  N P    +T+++     Y  ++  K  +
Sbjct: 196 AVRHTMLFSATMPGAVVAMARRYMKQPTHIRANDPDDGGQTVKNIKQVVYRAHALDKVEV 255

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L ++LQS+    + I+F   K+    +   L  +GF+  AIHG++ Q +R + L  F+ G
Sbjct: 256 LARILQSEGRGLS-IVFARTKRTAAKVADELADRGFASGAIHGDLGQGAREQALRAFRSG 314

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I ++VA+D+AARG+D+ +V HV N+  P   + Y+HR GRTGRAG  G A T V  +D+
Sbjct: 315 KIDVLVATDVAARGIDVDEVTHVVNYQCPEDEKTYLHRTGRTGRAGHKGTAVTFVDWDDL 374

Query: 355 KHIDAIEKLIE 365
                I K ++
Sbjct: 375 PRWSLINKALD 385


>gi|24374643|ref|NP_718686.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24349273|gb|AAN56130.1|AE015749_7 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 427

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 145/366 (39%), Positives = 210/366 (57%), Gaps = 10/366 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+   +   + + GYV PTP+Q  TIP VL   DV   A TG+GKTA+F LP+L 
Sbjct: 10  SFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQ 69

Query: 62  ILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQN 116
            L + ++      + R L+L PTRELA QVAD+F  Y  ++N  L +    GG+    Q 
Sbjct: 70  RLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQM 129

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  GADVL+ TPGR+LD      L +  +   V+DEADRML +GF   ++ + + +P 
Sbjct: 130 QSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPR 189

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +QTLLFSAT  +E++ ++   L  P  +E +  S    TIE   +       +K ALL 
Sbjct: 190 QKQTLLFSATFPEEVRALTTKLLHQP--LEYHLQSEQESTIEQRVITV--NREQKTALLA 245

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ Q      +IF + K    +L   L K+G S    HG+  Q +R ++L  FK G I
Sbjct: 246 HLIK-QHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEI 304

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARG+DI  +  V NFD+P    +Y+HRIGR+GRAG  G A TL++ E+  H
Sbjct: 305 SVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHH 364

Query: 357 IDAIEK 362
              IEK
Sbjct: 365 FGVIEK 370


>gi|78063799|ref|YP_373707.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. 383]
 gi|77971684|gb|ABB13063.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. 383]
          Length = 465

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 150/392 (38%), Positives = 224/392 (57%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GYV  TPIQ  ++P+ L   D+   A+TG+GKTA+F L +L  
Sbjct: 9   FSALSLTPATLANLAQLGYVDMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLAR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    +IL PTRELA QV     +  +   N+ V  L GG P   Q + LE 
Sbjct: 69  LDARRFDVQ---AMILCPTRELADQVTQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  + P TRQTL
Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL+NPK +++      ++  +  +  T     ++   + QLL  
Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEVKLAERHDDSKIRQRFYEVT---EDERLHAVGQLLNH 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   I FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 243 YRPVST-IAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  +  IE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGGIE 361

Query: 362 KLIEKKVDW------LNGDLSSLNPPLEKIDI 387
           +  +++V+W            +L PP+E + I
Sbjct: 362 QAQKREVEWHPLAELTPTGTDTLLPPMETLQI 393


>gi|258623163|ref|ZP_05718173.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM573]
 gi|258584555|gb|EEW09294.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM573]
          Length = 663

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 140/370 (37%), Positives = 221/370 (59%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 26  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N   L V  + GG     Q + L
Sbjct: 86  NKLNLSQHK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 142

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 143 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 202

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL+NP+ ++V   + T   +E  +        +K   + +LL
Sbjct: 203 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 261 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 320 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 379

Query: 360 IEKLIEKKVD 369
           IE++    ++
Sbjct: 380 IERVTRSSME 389


>gi|253733085|ref|ZP_04867250.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253728993|gb|EES97722.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 517

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 158/423 (37%), Positives = 243/423 (57%), Gaps = 27/423 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S   V ++   G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 14  NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  G+  V+   +LIL PTRELA QVA+   ++ +   + V  + GG+P E Q K L++
Sbjct: 74  KV-VGKQGVQ---SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQT 180
           G  +++ TPGR++DH NR  L  + I  L++DEAD M++MGFI  ++ I   +P   RQT
Sbjct: 130 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +Q + + F+++PK I+      +   IE  +  T  +  +K       L 
Sbjct: 190 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNFLD 247

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++V
Sbjct: 248 VHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  I
Sbjct: 307 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 366

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E    +K       +S+L PP  K ++ Q   AR+++           + +N+ S+KS  
Sbjct: 367 EDANGRK-------MSALRPPHRK-EVLQ---AREDD--------IKEKVENWMSKKSES 407

Query: 421 PLK 423
            LK
Sbjct: 408 RLK 410


>gi|253731082|ref|ZP_04865247.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|297210100|ref|ZP_06926493.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300910462|ref|ZP_07127914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|304379262|ref|ZP_07362001.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|253725209|gb|EES93938.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|296885300|gb|EFH24240.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300888304|gb|EFK83495.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|304342121|gb|EFM08021.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312437505|gb|ADQ76576.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|320140748|gb|EFW32600.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143723|gb|EFW35500.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 517

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 149/384 (38%), Positives = 225/384 (58%), Gaps = 15/384 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S   V ++   G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 14  NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  G+  V+   +LIL PTRELA QVA+   ++ +   + V  + GG+P E Q K L++
Sbjct: 74  KV-VGKQGVQ---SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQT 180
           G  +++ TPGR++DH NR  L  + I  L++DEAD M++MGFI  ++ I   +P   RQT
Sbjct: 130 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +Q + + F+++PK I+      +   IE  +  T  +  +K       L 
Sbjct: 190 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNFLD 247

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++V
Sbjct: 248 VHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  I
Sbjct: 307 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 366

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E    +K       +S+L PP  K
Sbjct: 367 EDANGRK-------MSALRPPHRK 383


>gi|37522077|ref|NP_925454.1| hypothetical protein gll2508 [Gloeobacter violaceus PCC 7421]
 gi|35213076|dbj|BAC90449.1| gll2508 [Gloeobacter violaceus PCC 7421]
          Length = 437

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 141/360 (39%), Positives = 214/360 (59%), Gaps = 6/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGLS  VV A+ + G+ +PTPIQ+K+IP +L   D+   AQTGTGKTA+F LP++  
Sbjct: 5   FSALGLSESVVKALDELGFEQPTPIQLKSIPFLLDGRDLLAQAQTGTGKTAAFGLPLVDR 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +   ARV+    L+L PTRELA QV +    Y K+  + V  + GG P + Q ++L  G
Sbjct: 65  SDPQDARVQ---ALVLAPTRELAVQVCEAIHTYSKHSGVRVLPIYGGQPIDRQMRRLRAG 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A +++ TPGR+LD   RG L ++ +  LV+DEAD+MLDMGFI  +Q I    P  RQ + 
Sbjct: 122 AQIVVGTPGRVLDLMRRGSLDLSALRTLVLDEADQMLDMGFIEEVQTILDAAPPERQLVF 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   ++K++   L+ P  + +  P+   +T        +  +  +   L ++L ++
Sbjct: 182 FSATLPASIRKLAARHLRTP--MTLTMPAEERDTPAIAQRVYFVNFKNRAQALTRVLAAE 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D   + +IF   K+    L   L+  G    A+HG+++Q +R  +L  F+   + ++VA+
Sbjct: 240 DP-ASALIFTRTKQAADELAEQLQDDGHRAEALHGDLNQSAREAVLGRFRRQQLNVVVAT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI D+ HV N+D+P   E+YIHRIGRTGRAGR G A +     D   +  IE+
Sbjct: 299 DVAARGLDIADLSHVINYDMPQDGESYIHRIGRTGRAGRTGVAISFALPTDRYRLRLIER 358


>gi|262174005|ref|ZP_06041682.1| cold-shock DEAD-box protein A [Vibrio mimicus MB-451]
 gi|261891363|gb|EEY37350.1| cold-shock DEAD-box protein A [Vibrio mimicus MB-451]
          Length = 643

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 140/370 (37%), Positives = 221/370 (59%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N   L V  + GG     Q + L
Sbjct: 66  NKLNLSQHK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 123 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL+NP+ ++V   + T   +E  +        +K   + +LL
Sbjct: 183 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVD 369
           IE++    ++
Sbjct: 360 IERVTRSSME 369


>gi|157377241|ref|YP_001475841.1| ATP-dependent RNA helicase RhlB [Shewanella sediminis HAW-EB3]
 gi|189040083|sp|A8G0U0|RHLB_SHESH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|157319615|gb|ABV38713.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 435

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 154/411 (37%), Positives = 250/411 (60%), Gaps = 17/411 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FAD  L  ++  A+ ++G+   TPIQ  ++P++LQ+ D+ G AQTGTGKT +F++     
Sbjct: 11  FADFSLQTEIKTALNESGFEYCTPIQALSLPILLQKKDIAGQAQTGTGKTLAFLVATFNH 70

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            + T + +GR ++  PR +I+ PTRELA Q+A + +   K+  L V ++ GG  +E Q K
Sbjct: 71  LLTTPIPEGR-QLNQPRAIIMAPTRELAIQIAKDADLLAKHTGLKVGIVYGGESYEVQRK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
            L++G D+LI T GRI+D+  +G + ++ I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLDKGVDILIGTTGRIIDYVRQGIINVSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDA 189

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234
            +R  +LFSAT++ ++Q+++ + +  P+++E+     T++ I E  F   Y    +K  L
Sbjct: 190 KSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIF---YPSMDEKMRL 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  LL+ +D     I+F N K +   L   LE  G  V  + G++ Q+ R++IL  F EG
Sbjct: 247 LLTLLE-EDWPDKAIVFSNTKHSCEKLWSWLEGDGHRVGLLTGDVPQKKRIRILELFTEG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG+ G + +   +E  
Sbjct: 306 KLDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGVSVSFACEEYA 365

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            ++ AIE+ I   +   N D  +L   L+ I      H RK+N  PQ  +G
Sbjct: 366 LNLPAIEEYINHTIPVTNYDSEAL---LDDIPAPVRVH-RKHNSRPQGRSG 412


>gi|283471297|emb|CAQ50508.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 506

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 149/384 (38%), Positives = 225/384 (58%), Gaps = 15/384 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S   V ++   G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  G+  V+   +LIL PTRELA QVA+   ++ +   + V  + GG+P E Q K L++
Sbjct: 63  KV-VGKQGVQ---SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQT 180
           G  +++ TPGR++DH NR  L  + I  L++DEAD M++MGFI  ++ I   +P   RQT
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +Q + + F+++PK I+      +   IE  +  T  +  +K       L 
Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNFLD 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++V
Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  I
Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E    +K       +S+L PP  K
Sbjct: 356 EDANGRK-------MSALRPPHRK 372


>gi|104783494|ref|YP_609992.1| ATP-dependent RNA helicase RhlB [Pseudomonas entomophila L48]
 gi|95112481|emb|CAK17208.1| ATP-dependent RNA helicase RhlB [Pseudomonas entomophila L48]
          Length = 488

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 225/373 (60%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS +V+ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ +++ 
Sbjct: 101 FHDFKLSNEVMHAIHDLGFPYCTPIQAQVLGHTLRGQDAIGRAQTGTGKTAAFLISIISQ 160

Query: 63  LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L++        +  PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K 
Sbjct: 161 LQQVPPPKERYMGEPRALIIAPTRELVVQIAKDAMALTKYSGLNVMSFVGGMDFDKQLKS 220

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           LE R  D+L+ TPGR+LD   RG++ ++ +E+LV+DEADRMLDMGFIP ++ I    P  
Sbjct: 221 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVLVLDEADRMLDMGFIPQVRQIIRQTPPK 280

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT TD++  +++ +  NP  +E+   +  +ET+E    A     S K  LL
Sbjct: 281 SERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAG--SDKYKLL 338

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ +Q+  +  ++F N+K  V  +   L + G +   + G++ Q  R++ L NF+EG 
Sbjct: 339 YNLV-TQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLENFREGR 397

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 398 ISVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGSSGVSISFAGEDDSY 457

Query: 356 HIDAIEKLIEKKV 368
            + AIE+L+ +K+
Sbjct: 458 QLPAIEELLGRKI 470


>gi|49484306|ref|YP_041530.1| helicase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282904748|ref|ZP_06312622.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus C160]
 gi|282906426|ref|ZP_06314277.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282920258|ref|ZP_06327982.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus C427]
 gi|283958860|ref|ZP_06376305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|295428668|ref|ZP_06821294.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|81650664|sp|Q6GEZ3|Y2168_STAAR RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAR2168
 gi|49242435|emb|CAG41149.1| putative helicase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282316118|gb|EFB46499.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus C427]
 gi|282330376|gb|EFB59894.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282594781|gb|EFB99758.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus C160]
 gi|283789578|gb|EFC28401.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|295127338|gb|EFG56978.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|315193240|gb|EFU23638.1| putative helicase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 506

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 149/384 (38%), Positives = 225/384 (58%), Gaps = 15/384 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S   V ++   G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  G+  V+   +LIL PTRELA QVA+   ++ +   + V  + GG+P E Q K L++
Sbjct: 63  KV-VGKQGVQ---SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQT 180
           G  +++ TPGR++DH NR  L  + I  L++DEAD M++MGFI  ++ I   +P   RQT
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +Q + + F+++PK I+      +   IE  +  T  +  +K       L 
Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNFLD 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++V
Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  I
Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E    +K       +S+L PP  K
Sbjct: 356 EDANGRK-------MSALRPPHRK 372


>gi|319893030|ref|YP_004149905.1| Cold-shock DEAD-box protein A [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162726|gb|ADV06269.1| Cold-shock DEAD-box protein A [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323463915|gb|ADX76068.1| DEAD-box ATP dependent RNA helicase, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 495

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 146/383 (38%), Positives = 224/383 (58%), Gaps = 15/383 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG+S +    +   G+ +PTPIQ  +IP  L+  D+ G AQTGTGKT +F +P++  
Sbjct: 4   FTELGVSERTAETLEAMGFTEPTPIQKDSIPFALENIDILGQAQTGTGKTGAFGIPLIEK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +  G+  VR    LIL PTRELA QVA+   ++ +   + V  + GG+P + Q K L+RG
Sbjct: 64  V-VGKEGVR---ALILAPTRELAMQVAEQLREFSRGQKVQVVTVFGGMPIDRQIKSLKRG 119

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQTL 181
             +++ TPGR++DH NR  L    IE L++DEAD M++MGFI  ++ I   +P   RQT+
Sbjct: 120 PQIVVGTPGRVIDHLNRRTLKPQQIETLILDEADEMMNMGFIDDMRYIMDKLPSENRQTM 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +Q++ + F+++P+ I+      +   I+  +  T  +  +K       L  
Sbjct: 180 LFSATMPKAIQELVQKFMKSPRIIKTMNNEISDPQIDEYY--TIVKELEKFDTFTNFLDV 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 238 HQP-ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+HG A T V   ++ +I  IE
Sbjct: 297 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKHGIAVTFVNPIEMDYIRQIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
           +   ++       + +L PP  K
Sbjct: 357 QTNRRQ-------MRALRPPHRK 372


>gi|262403840|ref|ZP_06080398.1| cold-shock DEAD-box protein A [Vibrio sp. RC586]
 gi|262350344|gb|EEY99479.1| cold-shock DEAD-box protein A [Vibrio sp. RC586]
          Length = 643

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 140/370 (37%), Positives = 221/370 (59%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N   L V  + GG     Q + L
Sbjct: 66  NKLNLSQHK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 123 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL+NP+ ++V   + T   +E  +        +K   + +LL
Sbjct: 183 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVD 369
           IE++    ++
Sbjct: 360 IERVTRSSME 369


>gi|261416325|ref|YP_003250008.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372781|gb|ACX75526.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 802

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 142/370 (38%), Positives = 220/370 (59%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLSP+V+ AV  AGY  P+PIQ K IP +LQ  ++ G AQTGTGKTA+F LP+L+ 
Sbjct: 126 FDDLGLSPEVLEAVKLAGYETPSPIQAKAIPALLQGANLLGTAQTGTGKTAAFSLPLLSR 185

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121
           +        M   L+L PTRELA QV+D  ++Y  K  N+TV  + GG     Q + L+R
Sbjct: 186 INFNGRETSM---LVLTPTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQLRALKR 242

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            A +++ TPGR++DH  RG + +  ++ +V+DEAD MLDMGF+  ++ I   +P   Q  
Sbjct: 243 KASIVVATPGRLIDHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPADAQRA 302

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++K+ +  L   +   +   ++T E I  C      +   K   L ++L+ 
Sbjct: 303 LFSATMPDSVKKIIDQHLGEYEEARIEGKTTTVENI--CQRYLLVKNEHKIEALARVLEG 360

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++     +IF   K+N   +   LE +GF+V  ++G++ Q  R + ++  K G + ++VA
Sbjct: 361 EE-FDGVLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIVVA 419

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+  +  V N+D+P   E+Y+HRIGRTGRAGR G A   +   + + +  IE
Sbjct: 420 TDVAARGIDVDRISLVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFITPREKRMLKTIE 479

Query: 362 KLIEKKVDWL 371
           K   + +D +
Sbjct: 480 KATRQPIDVM 489


>gi|15925071|ref|NP_372605.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927656|ref|NP_375189.1| hypothetical protein SA1885 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283733|ref|NP_646821.1| hypothetical protein MW2004 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486874|ref|YP_044095.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57650754|ref|YP_186888.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161548|ref|YP_494683.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195982|ref|YP_500795.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148268533|ref|YP_001247476.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394597|ref|YP_001317272.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus JH1]
 gi|151222197|ref|YP_001333019.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156980397|ref|YP_001442656.1| hypothetical protein SAHV_2066 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161510293|ref|YP_001575952.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253316240|ref|ZP_04839453.1| putative helicase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006870|ref|ZP_05145471.2| putative helicase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257793840|ref|ZP_05642819.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9781]
 gi|258407008|ref|ZP_05680158.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9763]
 gi|258422029|ref|ZP_05684946.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9719]
 gi|258433601|ref|ZP_05688674.1| ATP-dependent RNA helicase [Staphylococcus aureus A9299]
 gi|258440496|ref|ZP_05690666.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258445704|ref|ZP_05693882.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A6300]
 gi|258450158|ref|ZP_05698253.1| ATP-dependent RNA helicase [Staphylococcus aureus A6224]
 gi|258453208|ref|ZP_05701199.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus A5948]
 gi|258453387|ref|ZP_05701369.1| ATP-dependent RNA helicase [Staphylococcus aureus A5937]
 gi|262049250|ref|ZP_06022125.1| hypothetical protein SAD30_0461 [Staphylococcus aureus D30]
 gi|262052494|ref|ZP_06024692.1| hypothetical protein SA930_0070 [Staphylococcus aureus 930918-3]
 gi|269203717|ref|YP_003282986.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282895275|ref|ZP_06303488.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8117]
 gi|282911647|ref|ZP_06319446.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282923070|ref|ZP_06330755.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9765]
 gi|282929553|ref|ZP_06336950.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A10102]
 gi|284025116|ref|ZP_06379514.1| putative helicase [Staphylococcus aureus subsp. aureus 132]
 gi|294850566|ref|ZP_06791293.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9754]
 gi|295407012|ref|ZP_06816814.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8819]
 gi|296275711|ref|ZP_06858218.1| putative helicase [Staphylococcus aureus subsp. aureus MR1]
 gi|297246745|ref|ZP_06930562.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8796]
 gi|81648913|sp|Q6G7M9|Y1985_STAAS RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAS1985
 gi|81694077|sp|Q5HEB9|Y2072_STAAC RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
           SACOL2072
 gi|81704263|sp|Q7A0D2|Y2004_STAAW RecName: Full=Probable DEAD-box ATP-dependent RNA helicase MW2004
 gi|81705333|sp|Q7A4G0|Y1885_STAAN RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SA1885
 gi|81781186|sp|Q99SH6|Y2081_STAAM RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAV2081
 gi|122538977|sp|Q2FWH5|Y2316_STAA8 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
           SAOUHSC_02316
 gi|123484971|sp|Q2FF45|Y2037_STAA3 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
           SAUSA300_2037
 gi|13701876|dbj|BAB43168.1| SA1885 [Staphylococcus aureus subsp. aureus N315]
 gi|14247854|dbj|BAB58243.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21205175|dbj|BAB95869.1| MW2004 [Staphylococcus aureus subsp. aureus MW2]
 gi|49245317|emb|CAG43792.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284940|gb|AAW37034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus COL]
 gi|87127522|gb|ABD22036.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203540|gb|ABD31350.1| ATP-dependent RNA helicase, DEAD box family, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|147741602|gb|ABQ49900.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149947049|gb|ABR52985.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150374997|dbj|BAF68257.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156722532|dbj|BAF78949.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160369102|gb|ABX30073.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257787812|gb|EEV26152.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9781]
 gi|257841341|gb|EEV65785.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9763]
 gi|257841929|gb|EEV66361.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9719]
 gi|257849332|gb|EEV73311.1| ATP-dependent RNA helicase [Staphylococcus aureus A9299]
 gi|257852565|gb|EEV76483.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257855543|gb|EEV78480.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A6300]
 gi|257856632|gb|EEV79538.1| ATP-dependent RNA helicase [Staphylococcus aureus A6224]
 gi|257859154|gb|EEV82011.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus A5948]
 gi|257864368|gb|EEV87114.1| ATP-dependent RNA helicase [Staphylococcus aureus A5937]
 gi|259159615|gb|EEW44661.1| hypothetical protein SA930_0070 [Staphylococcus aureus 930918-3]
 gi|259162615|gb|EEW47182.1| hypothetical protein SAD30_0461 [Staphylococcus aureus D30]
 gi|262076007|gb|ACY11980.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269941681|emb|CBI50088.1| putative helicase [Staphylococcus aureus subsp. aureus TW20]
 gi|282324412|gb|EFB54725.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282589032|gb|EFB94136.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A10102]
 gi|282593261|gb|EFB98258.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9765]
 gi|282762348|gb|EFC02495.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8117]
 gi|285817746|gb|ADC38233.1| Cold-shock DEAD-box protein A [Staphylococcus aureus 04-02981]
 gi|294822586|gb|EFG39028.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9754]
 gi|294968037|gb|EFG44064.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8819]
 gi|297176405|gb|EFH35677.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8796]
 gi|312830433|emb|CBX35275.1| DEAD/DEAH box helicase family protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315128752|gb|EFT84752.1| putative helicase [Staphylococcus aureus subsp. aureus CGS03]
 gi|315196987|gb|EFU27329.1| putative helicase [Staphylococcus aureus subsp. aureus CGS01]
 gi|323439203|gb|EGA96930.1| ATP-dependent RNA helicase [Staphylococcus aureus O11]
 gi|323442419|gb|EGB00048.1| ATP-dependent RNA helicase [Staphylococcus aureus O46]
 gi|329314766|gb|AEB89179.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329724041|gb|EGG60565.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329726361|gb|EGG62829.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329729332|gb|EGG65740.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 506

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 149/384 (38%), Positives = 225/384 (58%), Gaps = 15/384 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S   V ++   G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  G+  V+   +LIL PTRELA QVA+   ++ +   + V  + GG+P E Q K L++
Sbjct: 63  KV-VGKQGVQ---SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQT 180
           G  +++ TPGR++DH NR  L  + I  L++DEAD M++MGFI  ++ I   +P   RQT
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +Q + + F+++PK I+      +   IE  +  T  +  +K       L 
Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNFLD 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++V
Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  I
Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E    +K       +S+L PP  K
Sbjct: 356 EDANGRK-------MSALRPPHRK 372


>gi|213018866|ref|ZP_03334674.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|212995817|gb|EEB56457.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 402

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 145/339 (42%), Positives = 209/339 (61%), Gaps = 10/339 (2%)

Query: 24  PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRE 83
           PTPIQ++ IPL LQ  D+ G AQTGTGKT +F +P++  L    +   +   L++ PTRE
Sbjct: 19  PTPIQVQAIPLALQGKDILGSAQTGTGKTLAFAIPLVAKLMNEPS---IGSALVIVPTRE 75

Query: 84  LAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142
           LA QV     K   ++  L VALLIGG P   Q  +L++   ++I TPGRI+DH  R  L
Sbjct: 76  LAHQVTSEIRKLLSQSSLLRVALLIGGEPIFRQLNQLQKKPQIIIGTPGRIIDHIERKTL 135

Query: 143 LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNP 202
           +  N+ ILV+DE DRM DMGF   I+ I   +P  RQTL+FSAT+  E+ K++E +L  P
Sbjct: 136 VTRNVGILVLDETDRMFDMGFGIQIEEIMKHLPKIRQTLMFSATLPGEIVKLTEKYLNQP 195

Query: 203 KRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLLQSQDTMKNGIIFCNQKKNVVNL 261
           +R+ V+  ++T+  I+   V  YA  S+K   L+ QL Q + ++   IIF   K+    L
Sbjct: 196 ERVSVDCQATTSVKIKQEVV--YASESEKYGKLVTQLCQRKGSI---IIFVKTKRGADQL 250

Query: 262 CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321
              L K  +S  AIHG++ Q  R +++ +F+ G  Q+MVA+D+A+RGLDIP + HV N+D
Sbjct: 251 ADKLHKDDYSALAIHGDLRQHKRERVIDSFRRGRNQIMVATDVASRGLDIPHIQHVINYD 310

Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           VP    +Y+HRIGRT RAG  G A + V  +D + + A+
Sbjct: 311 VPQSQADYVHRIGRTARAGAEGFALSFVTPQDKRRLPAL 349


>gi|115434786|ref|NP_001042151.1| Os01g0172200 [Oryza sativa Japonica Group]
 gi|55296347|dbj|BAD68263.1| putative p68 RNA helicase [Oryza sativa Japonica Group]
 gi|113531682|dbj|BAF04065.1| Os01g0172200 [Oryza sativa Japonica Group]
 gi|215713416|dbj|BAG94553.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 759

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 138/358 (38%), Positives = 216/358 (60%), Gaps = 8/358 (2%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR 71
           +   V  AG+  PTPIQ ++ P+ L+  D+  +A+TG+GKT  +++P   +L++ +   R
Sbjct: 242 IYVKVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNSR 301

Query: 72  -MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130
             P  L+L PTRELA Q+ D  +K+G++  ++   L GG P   Q + LERGAD+++ TP
Sbjct: 302 DGPTVLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLERGADIVVATP 361

Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190
           GR+ D     ++ ++ +  LV+DEADRMLDMGF P I+ I   V   RQTL+F+AT   E
Sbjct: 362 GRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKE 421

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY---SKKCALLQQLLQSQDTMKN 247
           ++K++ + L NP ++ +    +T + + +  +  Y       +K   L Q+L+SQ+    
Sbjct: 422 VRKIASDLLSNPVQVNIG---NTDQLVANKSITQYVDVITPPEKSRRLDQILRSQEPGSK 478

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            IIFC+ K+    L  +L +Q +   AIHG+  Q  R  +LS F+ G   ++VA+D+AAR
Sbjct: 479 IIIFCSTKRMCDQLARNLARQ-YGASAIHGDKSQAERDSVLSEFRSGRCPILVATDVAAR 537

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           GLDI D+  V N+D P   E+Y+HRIGRTGRAG  G A+T    +D K+   + K++E
Sbjct: 538 GLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLVKILE 595


>gi|257426220|ref|ZP_05602635.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428878|ref|ZP_05605272.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257431487|ref|ZP_05607860.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257434197|ref|ZP_05610547.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257437110|ref|ZP_05613150.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282914927|ref|ZP_06322707.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M899]
 gi|282925469|ref|ZP_06333123.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus C101]
 gi|293508999|ref|ZP_06667786.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510911|ref|ZP_06669610.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus M809]
 gi|293547513|ref|ZP_06672188.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M1015]
 gi|257270925|gb|EEV03098.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257274220|gb|EEV05737.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257277728|gb|EEV08398.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257280836|gb|EEV10981.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257283503|gb|EEV13630.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282312870|gb|EFB43271.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus C101]
 gi|282321130|gb|EFB51461.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M899]
 gi|290919633|gb|EFD96706.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291094703|gb|EFE24975.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466196|gb|EFF08723.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus M809]
          Length = 506

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 151/386 (39%), Positives = 226/386 (58%), Gaps = 19/386 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S   V ++   G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLI- 61

Query: 62  ILEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             EK  G+  V+   +LIL PTRELA QVA+   ++ +   + V  + GG+P E Q K L
Sbjct: 62  --EKVLGKQGVQ---SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKAL 116

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTR 178
           ++G  +++ TPGR++DH NR  L  + I  L++DEAD M++MGFI  ++ I   +P   R
Sbjct: 117 KKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQR 176

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATM   +Q + + F+++PK I+      +   IE  +  T  +  +K       
Sbjct: 177 QTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNF 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L      +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I +
Sbjct: 235 LDVHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 293

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I 
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
            IE    +K       +S+L PP  K
Sbjct: 354 QIEDANGRK-------MSALRPPHRK 372


>gi|107103380|ref|ZP_01367298.1| hypothetical protein PaerPA_01004450 [Pseudomonas aeruginosa PACS2]
          Length = 523

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 143/373 (38%), Positives = 226/373 (60%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  L+P ++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ ++T 
Sbjct: 137 FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQ 196

Query: 62  ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L+    + R    PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K+
Sbjct: 197 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQ 256

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 257 LEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 316

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT TD++  +++ +  +P  +E+   +  ++T+E    A     S K  LL
Sbjct: 317 GERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAG--SDKYKLL 374

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ +Q+  +  ++F N+K  V  +   L K G S   + G++ Q  R++ L  F+EG 
Sbjct: 375 YNLV-AQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 433

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 434 IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAF 493

Query: 356 HIDAIEKLIEKKV 368
            +  IE+L+ +K+
Sbjct: 494 ALPPIEELLGRKI 506


>gi|312963192|ref|ZP_07777677.1| ATP-dependent RNA helicase [Pseudomonas fluorescens WH6]
 gi|311282703|gb|EFQ61299.1| ATP-dependent RNA helicase [Pseudomonas fluorescens WH6]
          Length = 444

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 153/370 (41%), Positives = 221/370 (59%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L  E  +      R LIL PTRELA QV  +  +Y ++  LT   + GG+    Q  K
Sbjct: 61  QLLTLEGPKVAANSARALILCPTRELAEQVHASVAEYAQHLPLTTYAVYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR++D F +  L +N ++ LV+DEADRMLD+GF   + NI  ++P  R
Sbjct: 121 LRKGVDILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D+++ ++   L +P  IEV+  +  A T++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVPV--DKKRKAELFVHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ +   K  ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +Q+
Sbjct: 239 MR-KGRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKASEVQI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V NFD+P  AE+YIHRIGRTGRAG  G+A +LV  +++  + 
Sbjct: 298 LVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLS 357

Query: 359 AIEKLIEKKV 368
           AIE L  + +
Sbjct: 358 AIEMLTRQTL 367


>gi|315128153|ref|YP_004070156.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315016666|gb|ADT70004.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 432

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 139/369 (37%), Positives = 218/369 (59%), Gaps = 13/369 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGL P+++  + D  Y +PTPIQ K IP +L   D+   A TG+GKTA+F LPML 
Sbjct: 9   NFNELGLIPELIARLSDLEYSQPTPIQAKAIPSILAGSDLIAGANTGSGKTATFALPMLQ 68

Query: 62  IL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113
            L      +K  ++      LIL PTRELA QVAD+ + Y  N+N  +    + GG+   
Sbjct: 69  TLFLAQGAKKAASKGNFVTGLILVPTRELAVQVADSVKSYSANFNGAIKTVAVFGGVSVN 128

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L  GAD+++ TPGR+LD  +   + ++ +  LV+DEADRML +GF   +  + +L
Sbjct: 129 TQMQALRGGADIIVATPGRLLDLISSNAIKLDKVSTLVLDEADRMLSLGFTEELAELLAL 188

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  +QT+LFSAT  +++ ++++  L NP  I+V +   +   ++  F     +   K  
Sbjct: 189 MPAKKQTMLFSATFPEQVTQLTQKLLTNPVEIQVQSKDEST-LVQRVFTVNKGE---KTT 244

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +L  L++ Q   +  +IF N KK+  +L   LEK+G +    HG+  Q  R +++  FK 
Sbjct: 245 VLAHLIK-QHKWRQALIFVNAKKDCEHLASKLEKRGVNAQVFHGDKGQSERTRVIEKFKA 303

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I++++A+D+AARGLDI  +  V NF++P    +Y+HRIGR+GRAG  G A +L+  +D
Sbjct: 304 GEIEVLIATDIAARGLDIEKLPVVINFNLPRSPADYMHRIGRSGRAGEVGLALSLIDYDD 363

Query: 354 IKHIDAIEK 362
             H   IEK
Sbjct: 364 FHHFRIIEK 372


>gi|296387620|ref|ZP_06877095.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PAb1]
          Length = 523

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 143/373 (38%), Positives = 226/373 (60%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  L+P ++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ ++T 
Sbjct: 137 FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQ 196

Query: 62  ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L+    + R    PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K+
Sbjct: 197 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQ 256

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 257 LEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 316

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT TD++  +++ +  +P  +E+   +  ++T+E    A     S K  LL
Sbjct: 317 GERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAG--SDKYKLL 374

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ +Q+  +  ++F N+K  V  +   L K G S   + G++ Q  R++ L  F+EG 
Sbjct: 375 YNLV-AQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 433

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 434 IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAF 493

Query: 356 HIDAIEKLIEKKV 368
            +  IE+L+ +K+
Sbjct: 494 ALPPIEELLGRKI 506


>gi|315604928|ref|ZP_07879985.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313364|gb|EFU61424.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 598

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 140/370 (37%), Positives = 215/370 (58%), Gaps = 9/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD G++  +V A+ D G   P PIQ  T+   L RHD+ G A+TGTGKT  F +P+L  
Sbjct: 72  FADFGVTDPIVDALEDKGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLGFGIPVLED 131

Query: 63  L----EKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    E+G   +     P+ LI+ PTREL  QVA +     K  +  +  + GG+ FE Q
Sbjct: 132 VIAPDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLRDAAKYLSTRIVEIYGGVAFEPQ 191

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L RGAD+++ TPGR++D   +G L ++ +E +V+DEAD MLD+GF+P ++ +   VP
Sbjct: 192 IEALTRGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVETLLGRVP 251

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234
             R T+LFSATM   +  ++  F+ +P  I    P    +T+       Y  ++  K  +
Sbjct: 252 ENRHTMLFSATMPGPVVALARRFMVHPTHIRAQDPDDQNQTVNTVKQVIYRVHAMNKVEV 311

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + ++LQ++   +  +IFC  K+    L   L  +GF+V A+HG++ Q +R + L  F++G
Sbjct: 312 VARILQAEGRGRT-VIFCRTKRTAARLGEDLTARGFAVGALHGDLGQGAREQALRAFRKG 370

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+  P   + YIHRIGRTGRAG  G A T V  +D 
Sbjct: 371 KVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGNSGTAVTFVDWDDT 430

Query: 355 KHIDAIEKLI 364
                I K +
Sbjct: 431 PRWSLISKAL 440


>gi|161486758|ref|YP_789265.2| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 507

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 143/373 (38%), Positives = 226/373 (60%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  L+P ++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ ++T 
Sbjct: 121 FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQ 180

Query: 62  ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L+    + R    PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K+
Sbjct: 181 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQ 240

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 241 LEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 300

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT TD++  +++ +  +P  +E+   +  ++T+E    A     S K  LL
Sbjct: 301 GERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAG--SDKYKLL 358

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ +Q+  +  ++F N+K  V  +   L K G S   + G++ Q  R++ L  F+EG 
Sbjct: 359 YNLV-AQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 417

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 418 IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAF 477

Query: 356 HIDAIEKLIEKKV 368
            +  IE+L+ +K+
Sbjct: 478 ALPPIEELLGRKI 490


>gi|329912990|ref|ZP_08275858.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
 gi|327545464|gb|EGF30669.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
          Length = 410

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 151/365 (41%), Positives = 213/365 (58%), Gaps = 5/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL  ++   +   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFSKLGLIDQLQRNLDTLGYSTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               +E  +      R L+L PTRELA QV   F +YG +  L   +  GG+    Q  K
Sbjct: 61  QRLTMEGPQVSSNCVRVLVLVPTRELAEQVHQAFGEYGASLPLRTHVAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD + +  +    ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGLDVLVATPGRLLDLYRQNAVKFEQLQTLVLDEADRMLDLGFSRELDEVFAALPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ +S   L NP RIE++  ++  +TI+    A      +K  L   L
Sbjct: 181 QTLLFSATFSDEIRALSTTLLDNPVRIEISPRNTPVKTIKQW--AIPVDKKRKPELFLHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+        ++F   ++ V  L   L  QG    AIHG+  Q +R++ L  FK   +Q+
Sbjct: 239 LKKH-RWGQVLVFVKTRRGVDELVDILLAQGIRADAIHGDKPQPARLRALEGFKSRDVQI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V NFD+P  AE+YIHRIGRTGRAG  G A +L+  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPQVVNFDLPIVAEDYIHRIGRTGRAGASGMAVSLLCADEAPLLA 357

Query: 359 AIEKL 363
           AIE L
Sbjct: 358 AIEML 362


>gi|164687595|ref|ZP_02211623.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM
           16795]
 gi|164603369|gb|EDQ96834.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM
           16795]
          Length = 541

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 142/361 (39%), Positives = 226/361 (62%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +S ++  ++ + G+ +P+PIQ ++IP++L   DV G AQTGTGKTA+F +P   I
Sbjct: 6   FEDLPISDEIKRSIAEIGFEEPSPIQAQSIPVILSGKDVIGQAQTGTGKTAAFSIP---I 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           LEK     +  + ++L PTRELA QV+    K GK    +    + GG P + Q K L+ 
Sbjct: 63  LEKVDPNNKHLQAIVLCPTRELAIQVSKEIRKLGKFKSGIKTLPVYGGQPIDRQIKALKS 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+I TPGR++DH NR  L +++++++V+DEAD MLDMGF   I+ I +  P  RQT 
Sbjct: 123 GVQVVIGTPGRVIDHINRKTLKLDDVKMVVLDEADEMLDMGFREDIELILNQTPIERQTT 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+ ++++ +   P+ I+V     T   I+  ++ T  + + K  +L +L+  
Sbjct: 183 FFSATMPKEILELTKLYQHEPEIIKVVRKELTVPNIKQFYIET--RRANKLEVLCRLIDV 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  K  ++FCN K+    L   L+ +G+   A+HG++ Q  R  ++  F++GTI ++VA
Sbjct: 241 YNP-KLSVVFCNTKRGSDELVSELQARGYFADALHGDLKQTQRDIVMDKFRQGTIDILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G +F+ V  ++++ +  IE
Sbjct: 300 TDVAARGIDVDDVDMVFNYDLPQDEEYYVHRIGRTGRAGREGVSFSFVYGKEMRKMRDIE 359

Query: 362 K 362
           +
Sbjct: 360 R 360


>gi|152983852|ref|YP_001346629.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PA7]
 gi|150959010|gb|ABR81035.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PA7]
          Length = 529

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 143/373 (38%), Positives = 226/373 (60%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  L+P ++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ ++T 
Sbjct: 143 FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQ 202

Query: 62  ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L+    + R    PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K+
Sbjct: 203 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQ 262

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 263 LEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 322

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT TD++  +++ +  +P  +E+   +  ++T+E    A     S K  LL
Sbjct: 323 GERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAG--SDKYKLL 380

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ +Q+  +  ++F N+K  V  +   L K G S   + G++ Q  R++ L  F+EG 
Sbjct: 381 YNLV-AQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 439

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 440 IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAF 499

Query: 356 HIDAIEKLIEKKV 368
            +  IE+L+ +K+
Sbjct: 500 ALPPIEELLGRKI 512


>gi|219667645|ref|YP_002458080.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
 gi|219537905|gb|ACL19644.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 428

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 145/355 (40%), Positives = 218/355 (61%), Gaps = 6/355 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV---R 71
           A+   GY + TPIQ + IP +L+  D+ G AQTGTGKTA+F +P+L  L  G+  +   R
Sbjct: 18  ALAAQGYSEATPIQAEAIPHLLEGLDLLGCAQTGTGKTAAFAIPILQSLAMGQGLLKGKR 77

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
             R L+L PTRELA Q+A++F  YG N  L   ++ GG+    Q +KLE+G D+L+ TPG
Sbjct: 78  QIRALVLAPTRELATQIAESFTAYGVNLPLRTLVIFGGVGQAPQTRKLEKGIDILVATPG 137

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+LD  N+G + ++++E  V+DE D+MLDMG +  ++ I + +P  RQ +LFSATM  E+
Sbjct: 138 RLLDLINQGFIDLSHVEHFVLDETDQMLDMGMLHDVKRIITYLPRERQNMLFSATMPVEI 197

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
           +K+++  L+ P +I +    S  + IE      +   + K ALL   L++ +   + ++F
Sbjct: 198 EKLADTILKGPVKIAMTPEFSPLDIIEQEVY--FVDKANKAALLTYWLKNNE-YDSVLVF 254

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
              K     +   L K+GF+  AIHGN  Q +R + L  FK+   +++VA+D+AARGLDI
Sbjct: 255 SRTKHGADKIVKELNKKGFTAVAIHGNKSQANREQALHAFKKRKTRILVATDIAARGLDI 314

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
            ++ HV N+++P   E YIHRIGRTGRAG  GKA T    E+   +  I+K I K
Sbjct: 315 QELSHVINYNLPEVPETYIHRIGRTGRAGLGGKAITFCDFEEKPLLRDIQKRIGK 369


>gi|311070440|ref|YP_003975363.1| ATP-dependent RNA helicase [Bacillus atrophaeus 1942]
 gi|310870957|gb|ADP34432.1| ATP-dependent RNA helicase [Bacillus atrophaeus 1942]
          Length = 481

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 135/364 (37%), Positives = 219/364 (60%), Gaps = 6/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  LS ++V A+   GY+ PT +Q K +P  L++ D+   +QTG+GKTA+F +P+ 
Sbjct: 4   ISFKDYTLSAEIVRALEGLGYMSPTEVQQKVMPQALEKKDLVVKSQTGSGKTAAFGIPIC 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + +    +   P+ LIL PTRELA QV ++    G+   +  A + G  PF+ Q  +L+
Sbjct: 64  EMADWDENK---PQALILTPTRELAVQVKEDITNIGRFKRMKAAAVFGKSPFDKQKAELK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+LDH  +G   +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T
Sbjct: 121 QKTHIVVGTPGRVLDHIEKGTFPLERLKYLVIDEADEMLNMGFIEQVEAIIKHLPRDRMT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ ++++++S  +++NP+ IE+     T + IEH  +     +  K +LL+ +L 
Sbjct: 181 MLFSATLPEDVEQLSRKYMKNPEHIEIKAAGLTTKHIEHSVIEVREDH--KFSLLKDVLV 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++   + IIFC  K+NV  L   L+   +    IHG + Q  R  +++ FK G  + + 
Sbjct: 239 TENP-DSCIIFCRTKENVDKLSEELDALDYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLA 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T V   + + +  I
Sbjct: 298 ATDVAARGIDIENITHVINYDLPLEKESYVHRTGRTGRAGNQGKAITFVTPYEKRFLAEI 357

Query: 361 EKLI 364
           E  I
Sbjct: 358 EAYI 361


>gi|169829741|ref|YP_001699899.1| ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus C3-41]
 gi|168994229|gb|ACA41769.1| Probable ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus
           C3-41]
          Length = 508

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 144/380 (37%), Positives = 228/380 (60%), Gaps = 13/380 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L +S   + +V   G+ + TPIQ  TI   ++  DV G AQTGTGKTA+F +P++ 
Sbjct: 3   NFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++    L++ PTRELA QV++   K G +  + +  + GG     Q + L+ 
Sbjct: 63  KIDPKNPNIQ---ALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRALKN 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI+DH NR  L + +++ LV+DEAD ML+MGFI  I  I   VP  RQTL
Sbjct: 120 RPQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINAILENVPSERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K++E F+++P+ +++     T + I+  FV +  +  +K  +L +LL  
Sbjct: 180 LFSATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAER--EKFDVLSRLLNV 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  IIF   K+ V  L  +L  +G+    IHG++ Q  R+ +L  FKE  I ++VA
Sbjct: 238 HQP-ELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLRIVE 356

Query: 362 KLIEKKVDWLNGDLSSLNPP 381
           +  +K+       ++ L PP
Sbjct: 357 ETTKKR-------MTPLRPP 369


>gi|313109282|ref|ZP_07795250.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 39016]
 gi|310881752|gb|EFQ40346.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 39016]
          Length = 523

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 143/373 (38%), Positives = 226/373 (60%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  L+P ++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ ++T 
Sbjct: 137 FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQ 196

Query: 62  ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L+    + R    PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K+
Sbjct: 197 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQ 256

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 257 LEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 316

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT TD++  +++ +  +P  +E+   +  ++T+E    A     S K  LL
Sbjct: 317 GERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAG--SDKYKLL 374

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ +Q+  +  ++F N+K  V  +   L K G S   + G++ Q  R++ L  F+EG 
Sbjct: 375 YNLV-AQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 433

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 434 IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAF 493

Query: 356 HIDAIEKLIEKKV 368
            +  IE+L+ +K+
Sbjct: 494 ALPPIEELLGRKI 506


>gi|159903626|ref|YP_001550970.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9211]
 gi|159888802|gb|ABX09016.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9211]
          Length = 604

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 143/371 (38%), Positives = 217/371 (58%), Gaps = 9/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F   G S  ++  +   GY  PTPIQ    P ++   D+ G AQTGTGKTA+F LP  
Sbjct: 52  LGFEGFGFSDDLINTLESKGYKDPTPIQKAAFPELMLGRDLLGQAQTGTGKTAAFALP-- 109

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
            ILE+ +   R P+ L+L PTRELA QVAD+F  Y +    + V  + GG  F AQ   L
Sbjct: 110 -ILERIKQDTRAPQVLVLAPTRELAMQVADSFRAYAQGRPEVQVLAVYGGSDFRAQINAL 168

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG  +++ TPGR++DH  +G  +  ++E LV+DEAD ML MGFI  I+ I   +P  RQ
Sbjct: 169 RRGVQIVVGTPGRVMDHIRQGTFIKTDLETLVLDEADEMLRMGFIDDIEWILEQLPAKRQ 228

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSATM  E++++S+ +L  P  I +      A+ I   ++    Q S K   L+++L
Sbjct: 229 MIFFSATMPSEIRRLSKQYLHEPAEITIKAQKKEAQLIRQRYIVI--QNSFKLEALKRVL 286

Query: 240 QSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++  T   G IIF   K   + L  SLE    +V  ++G++ Q  R + +   ++G I +
Sbjct: 287 ET--TADEGVIIFARTKAITLRLSESLEALNHNVAVLNGDVPQTLRERTIERLRQGGIDI 344

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  +G V N+D+P  +E Y+HRIGRTGRAGR G+A   V+  +   I+
Sbjct: 345 LVATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAILFVSPRERSFIN 404

Query: 359 AIEKLIEKKVD 369
            +E+ + + ++
Sbjct: 405 NLERAVGQSIE 415


>gi|323493918|ref|ZP_08099035.1| ATP-dependent RNA helicase DbpA [Vibrio brasiliensis LMG 20546]
 gi|323311859|gb|EGA65006.1| ATP-dependent RNA helicase DbpA [Vibrio brasiliensis LMG 20546]
          Length = 458

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 146/364 (40%), Positives = 222/364 (60%), Gaps = 7/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  +++  +   GY + TPIQ + +P+VL   DV G  +TG+GKTA+F L +L+ 
Sbjct: 5   FKTLGLKTELLETLDSLGYTEMTPIQQQALPMVLSGKDVIGQGKTGSGKTATFSLGLLSN 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   TL+L PTRELA QVA       +  +N+ V  L GG+P   Q   LE 
Sbjct: 65  LNVKRFRVQ---TLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH ++G++ ++ +  LV+DEADRMLDMGF   I  I    P  RQTL
Sbjct: 122 GAHILVGTPGRILDHMSKGRISLDELNTLVLDEADRMLDMGFEDAIDTIIEAAPAKRQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + ++ ++   + NP+ ++V + +    TIE  F        +  AL   LL  
Sbjct: 182 LFSATFPNNIESLAAKVMVNPEMVKVES-THEKTTIEQRFYQLNTTEERDDALEALLLTH 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   ++ ++FCN KK V N+   L  +GFSV  +HG+++QR R + L+ F   +I ++VA
Sbjct: 241 KP--ESSVVFCNTKKEVQNVADELSHRGFSVVELHGDMEQREREQALTMFANKSISILVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+  ++++   +  I+
Sbjct: 299 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGIAFSFFSEKEAYRVARID 358

Query: 362 KLIE 365
           + ++
Sbjct: 359 EYMD 362


>gi|221141602|ref|ZP_03566095.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|302751962|gb|ADL66139.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus str. JKD6008]
          Length = 506

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 149/384 (38%), Positives = 225/384 (58%), Gaps = 15/384 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S   V ++   G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  G+  V+   +LIL PTRELA QVA+   ++ +   + V  + GG+P E Q K L++
Sbjct: 63  KV-VGKQGVQ---SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQT 180
           G  +++ TPGR++DH NR  L  + I  L++DEAD M++MGFI  ++ I   +P   RQT
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +Q + + F+++PK I+      +   IE  +  T  +  +K       L 
Sbjct: 179 ILFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNFLD 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++V
Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  I
Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E    +K       +S+L PP  K
Sbjct: 356 EDANGRK-------MSALRPPHRK 372


>gi|150403372|ref|YP_001330666.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           maripaludis C7]
 gi|150034402|gb|ABR66515.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
           C7]
          Length = 546

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 138/362 (38%), Positives = 222/362 (61%), Gaps = 7/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F +LGLS +++ A+   G+  PTPIQ + IP++++ + DV G AQTGTGKTA+F +P+L 
Sbjct: 4   FKNLGLSDEIIKALEKKGFTNPTPIQEQAIPILIEGKRDVVGQAQTGTGKTAAFGIPILE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++     R  + LIL PTRELA QVA+  +    +  L V  + GG   + Q ++L+R
Sbjct: 64  TIDESS---RNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIRELKR 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGRILDH +R  + + N+  +V+DEAD ML+MGFI  ++ I   V   ++ L
Sbjct: 121 GVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTEKRML 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ D + K+++N+++    I+V     T    +  +   +++   K  LL +++  
Sbjct: 181 LFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSYYEIHSR--DKFELLSRIIDV 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +     G+IFC  K +V  +   L ++G++   +HG++ Q  R K L  FK   I ++VA
Sbjct: 239 EKEF-YGLIFCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLDKFKARKINVLVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI D+ HV N+D+P   E+Y+HRIGRTGRAG+ G A T V   + +    I+
Sbjct: 298 TDVAARGIDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKFKYIQ 357

Query: 362 KL 363
           K+
Sbjct: 358 KI 359


>gi|91784149|ref|YP_559355.1| putative ATP-dependent RNA helicase [Burkholderia xenovorans LB400]
 gi|91688103|gb|ABE31303.1| Putative ATP-dependent RNA helicase [Burkholderia xenovorans LB400]
          Length = 537

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 149/388 (38%), Positives = 227/388 (58%), Gaps = 32/388 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA LGLS  VV A+  AGY  PTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 50  FASLGLSADVVSALTAAGYQNPTPVQQRAIPAGIAGRDLMVSSPTGSGKTAAFMLPAIER 109

Query: 61  -TILEKGRA------------RVRMPR------TLILEPTRELAAQVADNFEKYGKNY-N 100
            + L+K +A            R R P+       L+L PTRELA QV      YGK+   
Sbjct: 110 FSQLQKTQAGQPREPRPADGARTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKR 169

Query: 101 LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160
           L    ++GG+ +  Q   L +  ++L+ TPGR++DH  RG++ ++ ++ILV+DEADRMLD
Sbjct: 170 LRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLD 229

Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV----NTPSSTAET 216
           MGFI  I+ I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+       ++ A+T
Sbjct: 230 MGFIEDIETIVAATPATRQTMLFSATLDGKITSLTGRLLKDPERIEIVQRMEQRTNIAQT 289

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
           + +           K  LL  LL+    +   I+F   K +   L   L   GF   A+H
Sbjct: 290 VHYV-----DDRDHKDRLLDHLLRDSG-LDQAIVFTATKIDADQLAGRLADAGFESAALH 343

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRT
Sbjct: 344 GDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRT 403

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           GRAGR G A +LV   +   +  IE+ +
Sbjct: 404 GRAGRSGIAVSLVHHAEQGALKRIERFV 431


>gi|228921162|ref|ZP_04084492.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838478|gb|EEM83789.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 458

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 143/364 (39%), Positives = 225/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 66  KIDPASSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K  V  L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKLRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|188575689|ref|YP_001912618.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520141|gb|ACD58086.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 614

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 138/361 (38%), Positives = 218/361 (60%), Gaps = 11/361 (3%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
           AV + GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+  +  + +   P+
Sbjct: 3   AVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSNADLNQVK---PQ 59

Query: 75  TLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
            L+L PTRELA QVA+ F+KY +      V  + GG P+  Q   L+RG  V++ TPGR+
Sbjct: 60  ALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGTPGRV 119

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193
           +DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  LFSATM   +++
Sbjct: 120 IDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPPAIRR 179

Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ--DTMKNGIIF 251
           +++ +L++P  + +   ++T+  I   +   +     K   L ++L+ +  D M   IIF
Sbjct: 180 IAQTYLKDPAEVIIAAKTTTSANIRQRY--WWVSGLHKLDALTRILEVEPFDGM---IIF 234

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
              K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++VA+D+AARGLD+
Sbjct: 235 ARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDV 294

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
             + HV N+D+P   E+Y+HRIGRTGRAGR G A   V   +   + +IE+   + ++ +
Sbjct: 295 ERISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTLREKGMLRSIERATRQPIEEM 354

Query: 372 N 372
            
Sbjct: 355 Q 355


>gi|241766543|ref|ZP_04764404.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
 gi|241363218|gb|EER58791.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
          Length = 415

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 148/365 (40%), Positives = 208/365 (56%), Gaps = 6/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLSP +V A    G+  PTP+Q   IP VL+  DV G AQTG+GKTA+F LP+L
Sbjct: 1   MPFSALGLSPALVQAATAMGFSAPTPVQSAAIPAVLRGADVLGSAQTGSGKTAAFALPLL 60

Query: 61  TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNK 117
             L+   +   R  R LIL PTRELAAQV +     G+     + VA++ GG+    Q  
Sbjct: 61  QRLQADAQNAPRHVRALILVPTRELAAQVGEVIRSLGRGLPQPVKVAVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV++ TPGR+LD      L + ++E LV+DEADR+LD+GF   +Q I  L+P  
Sbjct: 121 GLRGGADVVVATPGRLLDLVEHNALRLGSVEHLVLDEADRLLDLGFAEELQRILQLLPVR 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT    +Q ++E  L  P R+ V+   +    I     A  AQ  ++  LL+ 
Sbjct: 181 RQNLLFSATFAPAVQALAEGMLHEPVRVTVDDAPANVPAIAQRAFAVDAQ--RRTQLLRH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+Q     +  ++F   +    ++   L K G      HG + Q +R ++L  FK+   Q
Sbjct: 239 LVQEHQWSRV-MVFVATQYAAEHVAEKLYKAGIFATPFHGGLSQGARTQVLQEFKDDRWQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +DLAARG+DI  +  V N+D+P  A++Y+HRIGRTGRAG  G A + V+     H 
Sbjct: 298 VVVTTDLAARGIDIAQLPAVVNYDLPRSADDYVHRIGRTGRAGESGVAVSFVSAATEAHF 357

Query: 358 DAIEK 362
             IEK
Sbjct: 358 RLIEK 362


>gi|295704908|ref|YP_003597983.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294802567|gb|ADF39633.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
          Length = 466

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 143/369 (38%), Positives = 218/369 (59%), Gaps = 10/369 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D  LS  +  A+ + G+ + TPIQ + IP+ +   D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFSDFHLSKDIEKAIHNLGFEEATPIQAEAIPIAMTGKDLIGQAQTGTGKTTAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +E     ++    ++L PTRELA QVA+   + G+   +    + GG     Q K L++
Sbjct: 63  RVELSEEAIQ---GIVLAPTRELAIQVAEELNRIGQVKGVKTLPIYGGQDINRQIKALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++  TPGR++DH  R  + +N+I   V+DEAD ML+MGFI  IQ I   +    QTL
Sbjct: 120 RPHIISATPGRLMDHMKRRTIRLNHIRTAVLDEADEMLNMGFIEDIQTILGGISSPHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT--YAQYSKKCALLQQLL 239
           LFSATM+ ++Q +++ F+  P+ ++V     T + IE  +V      ++   C L+   L
Sbjct: 180 LFSATMSKQVQSLAQKFMNTPELVQVKAKQLTVKNIEQQYVEIPENRKFDVLCNLVD--L 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           QS D     I+F   KK V  L   L+K+G++   IHG++ Q  R  ++  FKE TI++M
Sbjct: 238 QSPDL---AIVFGRTKKRVDELAEGLKKRGYAAEGIHGDLTQSKRADVIRQFKEHTIEIM 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG  G A T +   +  H+  
Sbjct: 295 VATDVAARGLDITGVSHVYNFDIPQDPESYVHRIGRTGRAGTKGLAVTFIIPRERHHLKV 354

Query: 360 IEKLIEKKV 368
           IE + + K+
Sbjct: 355 IEDVTKTKM 363


>gi|125526364|gb|EAY74478.1| hypothetical protein OsI_02369 [Oryza sativa Indica Group]
          Length = 792

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 143/380 (37%), Positives = 225/380 (59%), Gaps = 8/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G  P+++  +  AG+  PTPIQ ++ P+ LQ  DV  IA+TG+GKT  ++LP    
Sbjct: 152 FETGGFPPEILKEIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLPGFMH 211

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++ +   R  P  L+L PTRELA Q+ +   K+G++  ++   L GG P   Q + L+R
Sbjct: 212 IKRLQNNPRSGPTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRDLDR 271

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR+ D     ++ +  +  LV+DEADRMLDMGF P I+ I   +P  RQTL
Sbjct: 272 GVDVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRRQTL 331

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY---SKKCALLQQL 238
           +++AT   E+++++E+ L +P ++ +    S  E + +  +    +    S+K   L+Q+
Sbjct: 332 MYTATWPKEVRRIAEDLLVHPVQVTIG---SVDELVANSAITQNVELITPSEKLRRLEQI 388

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+SQD+    +IFC  K+    L  +L +Q F   AIHG+  Q  R K+LS+F+ G   +
Sbjct: 389 LRSQDSGSKVLIFCTTKRMCDQLARTLTRQ-FGASAIHGDKSQSEREKVLSHFRSGRSPI 447

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N   P   E+Y+HRIGRTGRAG  G A+T    +D K+  
Sbjct: 448 LVATDVAARGLDIKDIRVVINSPFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQDSKYAA 507

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + K++E     +  DL+ +
Sbjct: 508 DLIKILEGANQRVPRDLADM 527


>gi|71022263|ref|XP_761361.1| hypothetical protein UM05214.1 [Ustilago maydis 521]
 gi|74699927|sp|Q4P3U9|RRP3_USTMA RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|46097669|gb|EAK82902.1| hypothetical protein UM05214.1 [Ustilago maydis 521]
          Length = 551

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 144/377 (38%), Positives = 223/377 (59%), Gaps = 13/377 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F+DLG+ P++V A  + G+  PTPIQ+K IP  LQ  DV G+AQTG+GKTA+F +P+L
Sbjct: 104 VEFSDLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPIL 163

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L         P+     +L PTRELA Q++   E  G    +  A ++GG+   +Q+ 
Sbjct: 164 QALWDN------PKPFFACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSI 217

Query: 118 KLERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            L +   V++ TPGR+ DH    K   +  ++ LV+DEADR+LDM F P I  +   +P 
Sbjct: 218 ALSKRPHVIVATPGRLQDHLENTKGFSLRGLQYLVMDEADRLLDMDFGPIIDKLLQSIPR 277

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R+T+LFSATMT ++ K+    L+NP R+EV+T  +T  T++  ++  +  ++ K   L 
Sbjct: 278 ERRTMLFSATMTTKVAKLQRASLKNPVRVEVDTKYTTVSTLKQHYM--FMPFAHKDTYLV 335

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L   Q    + I+F     +   L   L   GF    +HG + Q++R+  L+ FK G  
Sbjct: 336 HLANEQ-AGHSIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGR 394

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR G++ TLV + D++ 
Sbjct: 395 SILVATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVEL 454

Query: 357 IDAIEKLIEKKVDWLNG 373
           +  IE +I  K+    G
Sbjct: 455 LQRIEAVIGLKMTEFPG 471


>gi|110638001|ref|YP_678208.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110280682|gb|ABG58868.1| ATP-dependent RNA helicase (cold-shock DEAD-box protein A)
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 580

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 147/370 (39%), Positives = 229/370 (61%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGLSP+VV A+   GY + TPIQ KTIP+++   D+ G AQTGTGKTA+F +P +
Sbjct: 1   MLFKDLGLSPEVVEAIESIGYSEATPIQEKTIPILMTGKDLTGQAQTGTGKTAAFGIPAI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
              E     +   ++LIL PTRELA QV    +K  K    L V  + GG   E Q + L
Sbjct: 61  ---EHVDISINQTQSLILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGESIERQIRDL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGRI+DH +R  L  +++  +++DEAD ML+MGF   I+ I + +P  RQ
Sbjct: 118 KAGAHIVVGTPGRIIDHLDRRTLNASHLSQIILDEADEMLNMGFREDIELILTRLPEERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT+   +  +++ F  NP+ I++     T  T+E  +     + S+K  ++ Q++
Sbjct: 178 TVLFSATLAPPILALAKRFQNNPEIIKIERKELTISTVEQFYY--LVKNSQKTEIVTQII 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              + ++  +IFCN K+ V  +   L+  G +  ++HG+  QR R +++S F++G   ++
Sbjct: 236 -DLNNLQLMLIFCNTKRKVEEVTDELKAYGHNPISLHGDKTQRDRTEVMSKFRKGLANIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V  V N+DVP   ENY+HRIGRTGRAG+ GK+FTLV  ++   +  
Sbjct: 295 VATDVAARGIDVTGVDAVINYDVPLDIENYVHRIGRTGRAGQLGKSFTLVTSDEKYKLRD 354

Query: 360 IEKLIEKKVD 369
           IE+  +  ++
Sbjct: 355 IERYTKATIE 364


>gi|319957469|ref|YP_004168732.1| dead/deah box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
 gi|319419873|gb|ADV46983.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
          Length = 477

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 146/393 (37%), Positives = 236/393 (60%), Gaps = 16/393 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D    P++  A+ +AG+ +P+P+Q + IPL+L+  D+   A TGTGKTA+F LP+L
Sbjct: 1   MTFEDFNFKPQLAQAIKEAGFREPSPVQKEAIPLILEGRDLIAQAHTGTGKTAAFGLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L    +       L++ PTRELA QV+D   ++GK  ++  A + GG  +  Q + ++
Sbjct: 61  QQLSCDGS----VEALVIVPTRELATQVSDEIFRFGKALSIRTATVYGGSSYTRQIQHVQ 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             A V++ TPGR++D    GK+ ++    +++DEAD MLDMGF+  I+ I + +P +RQT
Sbjct: 117 -SASVVVATPGRLIDLLQSGKISLSP-RFVILDEADEMLDMGFLDDIKEIFTHLPESRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E++ +++  L++P  + +   + T E I   F        ++   L +LL 
Sbjct: 175 LLFSATMSKEIRTLAQRILKDPATVSITGGNVTNEKIRQLFYVV--DEPERDDALVRLLD 232

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  K+ IIFC  KK V  L   L  QG+    +HG++DQR R   +  FK G  ++++
Sbjct: 233 YKNPDKS-IIFCRMKKEVDRLRDFLAAQGYDAKGLHGDMDQRQREATIRAFKNGQAEILI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HVFN+ +P   E+Y+HRIGRTGRAGR G A ++V+  + + +  I
Sbjct: 292 ATDVAARGLDVNDVSHVFNYHLPFDPESYVHRIGRTGRAGREGTAISIVSPHEFRSLQRI 351

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           +K +   ++      S + P +E++  AQ + A
Sbjct: 352 QKSVGSSIE------SRIIPRIEEVR-AQRSDA 377


>gi|119773945|ref|YP_926685.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           amazonensis SB2B]
 gi|119766445|gb|ABL99015.1| DEAD/DEAH box helicase domain protein [Shewanella amazonensis SB2B]
          Length = 432

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 224/370 (60%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P+++ A+ + GY   TPIQ   IP V +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MKFESYSFAPEILQALAECGYETMTPIQRLAIPPVRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  -TILEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +L+  +AR     R LIL PTREL  Q+A+N + Y K+  L V  + GG   + Q +K
Sbjct: 61  QKLLDTPKAREATKARALILAPTRELTEQIANNIKAYAKHLELAVTTVFGGGKTDVQAQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+++ TPGR+L+H   G L +  +E LV+DEADRMLDMGFI  IQ +       R
Sbjct: 121 LRKGTDIIVATPGRLLEHLLAGNLSLAAVEFLVLDEADRMLDMGFIADIQKLIQACNKER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT +  ++K+++  ++    +  +  ++ A T+    V    +  +K  LL +L
Sbjct: 181 QTLMFSATFSGGVRKLADEIMKKHTVLTADRHNTAATTVSQ--VVYPVEQRRKRELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  ++  +  ++F   +++   L   L   G     IH    Q +R + L +F EG I++
Sbjct: 239 IGRKN-WQRVLVFSATREDCEKLTEELNLDGIPSAVIHSEKAQGTRRRALKDFTEGKIRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V++++AARGLDIPD+ +V NFD+P   E+Y+HR+GRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVSTEVAARGLDIPDLEYVVNFDLPFLPEDYVHRVGRTGRAGKSGVAISFVSREEERTLA 357

Query: 359 AIEKLIEKKV 368
            IEKLI +++
Sbjct: 358 DIEKLIGQRL 367


>gi|148242659|ref|YP_001227816.1| superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
 gi|147850969|emb|CAK28463.1| Superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
          Length = 560

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 141/371 (38%), Positives = 220/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  GL   ++ A+   GY +P+PIQ   IP ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 17  FAGFGLPDSLLEALTKCGYEQPSPIQAAAIPELMLGRDLLGQAQTGTGKTAAFALPLLAR 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           +       R P+ L+L PTRELA QV++ F++Y      L V  L GG  F  Q  KL R
Sbjct: 77  IN---LEARHPQVLVLAPTRELAIQVSEAFQRYASCTPGLHVLPLYGGSDFRDQIHKLRR 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  +G L ++ +E LV+DEAD ML MGFI  ++ +   +P  RQ +
Sbjct: 134 GVHVVVGTPGRVMDHMRQGTLNVSQLETLVLDEADEMLRMGFIDDVKWVLEQLPSERQVV 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++S+  LQNP  + + T  + A  I    +     + +K + L ++L++
Sbjct: 194 LFSATMPPEIKRISQQHLQNPAEVIIRTQKADASRIRQRHI--LLPHQQKLSALLRVLEA 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIF   K   V +  +LE +G +   ++G++ Q  R + +   K+G I ++VA
Sbjct: 252 HGP-GGVIIFARTKAVTVTVAEALEAEGIACSVLNGDVPQSLRERTIERLKQGRIDVLVA 310

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N+D P  +E Y+HRIGRTGRAGR G A   ++  + + + ++E
Sbjct: 311 TDVAARGLDVDRIGLVVNYDAPFDSEAYVHRIGRTGRAGRQGDAILFLSYRERRLLHSLE 370

Query: 362 KLIEKKVDWLN 372
           + +   +D ++
Sbjct: 371 RAVGSSIDAMD 381


>gi|145635138|ref|ZP_01790843.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
 gi|145267559|gb|EDK07558.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
          Length = 613

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 143/369 (38%), Positives = 228/369 (61%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L  
Sbjct: 7   FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQ 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121
           ++      + P+ L++ PTRELA QVAD  E + K    T +  L GG  ++ Q + L++
Sbjct: 67  IDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRILDH  R  L ++ +  +V+DEAD ML MGFI  ++ + + +P   QT 
Sbjct: 124 GAQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240
           LFSATM + ++++++ F+ +P+ +++   +  A  I+  C+   Y    +K   L + L+
Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++V
Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 361 EKLIEKKVD 369
           E L++K ++
Sbjct: 360 EHLMKKGIN 368


>gi|50086240|ref|YP_047750.1| putative ATP-dependent RNA helicase [Acinetobacter sp. ADP1]
 gi|49532216|emb|CAG69928.1| putative ATP-dependent RNA helicase [Acinetobacter sp. ADP1]
          Length = 640

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 147/378 (38%), Positives = 227/378 (60%), Gaps = 15/378 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FAD  L   +  A+ D G+  PTP+Q + IP  L+  D+   +QTG+GKTA+F+LP L 
Sbjct: 8   NFADFSLHESLQQALQDLGFTSPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLH 67

Query: 62  IL----------EKGRARVRMPRTLILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGI 110
            L          E+ RA V  P  L++ PTRELA QV+ D          + +A ++GG+
Sbjct: 68  SLAGQDTFLPFKERMRA-VTQPNILVISPTRELAQQVSQDAIALVRHMKGVRIAAIMGGM 126

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
           PF  Q ++L +GA V++ TPGR+LD  NR ++ ++ ++ L++DEADRMLD+GF   ++ I
Sbjct: 127 PFAKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEADRMLDLGFSEDLEAI 185

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
           + L    +QTL+FSAT  D + +++E  +Q+P RI + T  ST   I      T   +  
Sbjct: 186 SELAANRKQTLMFSATFADRIIRLAECMMQDPMRIAIETGHSTNTDITQTLHWTDG-FEH 244

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K  LL   L S ++M   ++F + +++   L   L + G SV A+HG + Q  R + L +
Sbjct: 245 KKKLLTHWL-SDESMDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRS 303

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
            +EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL  
Sbjct: 304 IREGKAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLAT 363

Query: 351 KEDIKHIDAIEKLIEKKV 368
             +   I A+E  +E ++
Sbjct: 364 YRERGKIRALEDYLEARL 381


>gi|218187595|gb|EEC70022.1| hypothetical protein OsI_00586 [Oryza sativa Indica Group]
          Length = 754

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 138/354 (38%), Positives = 215/354 (60%), Gaps = 8/354 (2%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR-MPR 74
           V  AG+  PTPIQ ++ P+ L+  D+  +A+TG+GKT  +++P   +L++ +   R  P 
Sbjct: 242 VQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNSRDGPT 301

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTRELA Q+ D  +K+G++  ++   L GG P   Q + LERGAD+++ TPGR+ 
Sbjct: 302 VLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLERGADIVVATPGRLN 361

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D     ++ ++ +  LV+DEADRMLDMGF P I+ I   V   RQTL+F+AT   E++K+
Sbjct: 362 DILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKEVRKI 421

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY---SKKCALLQQLLQSQDTMKNGIIF 251
           + + L NP ++ +    +T + + +  +  Y       +K   L Q+L+SQ+     IIF
Sbjct: 422 ASDLLSNPVQVNIG---NTDQLVANKSITQYVDVITPPEKSRRLDQILRSQEPGSKIIIF 478

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           C+ K+    L  +L +Q +   AIHG+  Q  R  +LS F+ G   ++VA+D+AARGLDI
Sbjct: 479 CSTKRMCDQLARNLARQ-YGASAIHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLDI 537

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
            D+  V N+D P   E+Y+HRIGRTGRAG  G A+T    +D K+   + K++E
Sbjct: 538 KDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLVKILE 591


>gi|152981028|ref|YP_001352892.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151281105|gb|ABR89515.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 466

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 143/391 (36%), Positives = 228/391 (58%), Gaps = 27/391 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   ++ A+ ++GY  PT +Q + IP  ++  D+   +QTG+GKTA+F+LP L
Sbjct: 1   MTFESLGLHASIIKALTESGYTAPTGVQAQAIPAAIEGRDMMVSSQTGSGKTAAFMLPAL 60

Query: 61  TIL---------------EKGRARVR---------MPRTLILEPTRELAAQVADNFEKYG 96
                             E   AR R          P+ L+L PTRELA QV  + +KYG
Sbjct: 61  HKFASEGDQPQTGKTPNQEAQSARSRGDRPRFKPAQPKMLVLTPTRELALQVTTSTDKYG 120

Query: 97  KNYNLTVAL-LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEA 155
                  A+ ++GG+P+  Q + L +  ++L+ TPGR++DH   GK+  + ++ILV+DEA
Sbjct: 121 AFMKRVKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA 180

Query: 156 DRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
           DRMLDMGFI  I+ I +  P  RQT+LFSAT+   +  +++   ++   I++   ++  E
Sbjct: 181 DRMLDMGFIDDIEKIVAATPEGRQTMLFSATLDGMVGNMAKRITKDALIIQIAGSATKHE 240

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
            I+ C V      S K  +L  LL+ + TM   ++F   K++   +   L   GF+  A+
Sbjct: 241 NIKQC-VHFVDDLSHKNRMLDHLLRDE-TMDQAVVFTATKRDADTIADRLNIAGFAAAAL 298

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG++ Q +R + L   + G I+++VA+D+AARG+D+P + HV N+D+P   E+Y+HRIGR
Sbjct: 299 HGDMHQGARNRTLDGLRRGQIRVLVATDVAARGIDVPGITHVVNYDLPKFPEDYVHRIGR 358

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           TGRAGR+G A +LV   +  ++  IE+ I++
Sbjct: 359 TGRAGRNGIAVSLVNHAESMNVKRIERFIKQ 389


>gi|312602490|ref|YP_004022335.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
 gi|312169804|emb|CBW76816.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
          Length = 630

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 147/393 (37%), Positives = 224/393 (56%), Gaps = 34/393 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLSP++V A+  AGY  PTP+Q + IP  L   D+   + TG+GKTA+F+LP +  
Sbjct: 133 FIALGLSPEIVSALTAAGYQAPTPVQQRAIPAALAGRDLLVSSPTGSGKTAAFMLPAIER 192

Query: 63  L-----------------------EKGRAR------VRMPRTLILEPTRELAAQVADNFE 93
                                   ++G  R      V  P  L+L PTRELA QV     
Sbjct: 193 FAQMQKAGTLGQRANQPVHQAQRGDRGERRHRREQPVARPALLVLTPTRELAMQVTTAAT 252

Query: 94  KYGKNYN-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVI 152
            YGK+   L    ++GG+ +  Q   L +  ++L+ TPGR++DH  RG++ ++ +++LV+
Sbjct: 253 TYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQMLVL 312

Query: 153 DEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN-TPS 211
           DEADRMLDMGFI  I+ I    P TRQTLLFSAT+  ++  +++ FL + +RIE+   P 
Sbjct: 313 DEADRMLDMGFIEDIEAIIDRTPATRQTLLFSATLDGKVGSLAQRFLSDAERIEIRREPE 372

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
           S A   +          + K  LL  LL +   +   I+F   K +   +   L + GF+
Sbjct: 373 SRANIAQSVHYVD--DRAHKDRLLTHLL-ADGALDQAIVFTATKNDADVIAARLAEDGFA 429

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
             A+HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+H
Sbjct: 430 SAALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVH 489

Query: 332 RIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RIGRTGRAGR G A +LV   ++  +  IE+ +
Sbjct: 490 RIGRTGRAGRSGIAVSLVHHAEVGTLKRIERFV 522


>gi|229844936|ref|ZP_04465073.1| hypothetical protein CGSHi6P18H1_04237 [Haemophilus influenzae
           6P18H1]
 gi|229812070|gb|EEP47762.1| hypothetical protein CGSHi6P18H1_04237 [Haemophilus influenzae
           6P18H1]
          Length = 613

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 143/369 (38%), Positives = 228/369 (61%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L  
Sbjct: 7   FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQ 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121
           ++      + P+ L++ PTRELA QVAD  E + K    T +  L GG  ++ Q + L++
Sbjct: 67  IDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRILDH  R  L ++ +  +V+DEAD ML MGFI  ++ + + +P   QT 
Sbjct: 124 GAQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240
           LFSATM + ++++++ F+ +P+ +++   +  A  I+  C+   Y    +K   L + L+
Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++V
Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 361 EKLIEKKVD 369
           E L++K ++
Sbjct: 360 EHLMKKGIN 368


>gi|167625498|ref|YP_001675792.1| ATP-dependent RNA helicase DbpA [Shewanella halifaxensis HAW-EB4]
 gi|167355520|gb|ABZ78133.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 469

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 147/367 (40%), Positives = 221/367 (60%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L  +++  +   GY   TPIQ +++P +L   DV G  +TG+GKTA+F L +L  
Sbjct: 14  FSSLNLKVELLDNLKTMGYESMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLNK 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L+  R R++   TL+L PTRELA QVA       +  +N+ V  L GG+P   Q   LE 
Sbjct: 74  LDVKRFRIQ---TLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEH 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG+L + N+  LV+DEADRML+MGF   ++ I   +P  RQTL
Sbjct: 131 GAHIIVGTPGRIIDHLDRGRLDLENVHTLVLDEADRMLEMGFQVELEGIMERMPIERQTL 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  +++Q +++  +  P  ++V +  +T+ TIE  F        +  AL   LLQ 
Sbjct: 191 LFSATFPEQIQSIADKIMFKPVMVKVASSHATS-TIEQHFYEVGNNNDRMRALKLLLLQY 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   ++ ++FCN K+   ++   L+  GFSV A+HG+++QR R + L  F   ++ +MVA
Sbjct: 250 RP--ESAVVFCNTKRETKDVAAQLKNDGFSVVALHGDLEQRDRDQTLLQFANKSVSIMVA 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N+ V    E +IHRIGRTGRAG  G A T  + ED   I  +E
Sbjct: 308 TDVAARGLDIDALDAVINYHVAYDTEVHIHRIGRTGRAGSKGSAHTFYSDEDGYKIALLE 367

Query: 362 KLIEKKV 368
             +E+ +
Sbjct: 368 DYLERDI 374


>gi|17545341|ref|NP_518743.1| ATP-dependent RNA helicase DbpA [Ralstonia solanacearum GMI1000]
 gi|17427633|emb|CAD14152.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
           GMI1000]
          Length = 465

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 152/392 (38%), Positives = 221/392 (56%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P V+  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 10  FSTLALAPAVLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    ++L PTRELA QVA    +  +   N+ V  L GG P   Q   LE 
Sbjct: 70  LDTRRFDVQ---AMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH  RG L +  ++ LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 127 GAHVVVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPPERQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S   L+NPK +++      ++  +  +  T  +      LL +  + 
Sbjct: 187 LFSATYPDGIAKLSRQILRNPKEVKLEERHDDSKIRQRFYEVTDDERLHAVGLLLKHYRP 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+     FCN K+   NL   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 247 VSTLA----FCNTKQQCRNLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  +  IE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGGIE 362

Query: 362 KLIEKKVDW---LNGDLSS---LNPPLEKIDI 387
           + + ++V+W      D SS   L PP+E + I
Sbjct: 363 QALGREVEWHRLAELDASSDAPLLPPMETLQI 394


>gi|255746441|ref|ZP_05420388.1| cold-shock DEAD-box protein A [Vibrio cholera CIRS 101]
 gi|262148974|ref|ZP_06028121.1| cold-shock DEAD-box protein A [Vibrio cholerae INDRE 91/1]
 gi|255736195|gb|EET91593.1| cold-shock DEAD-box protein A [Vibrio cholera CIRS 101]
 gi|262031252|gb|EEY49869.1| cold-shock DEAD-box protein A [Vibrio cholerae INDRE 91/1]
          Length = 643

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 221/370 (59%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N   L V  + GG     Q + L
Sbjct: 66  NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 123 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL+NP+ ++V   + T   +E  +        +K   + +LL
Sbjct: 183 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HV+N+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVD 369
           IE++    ++
Sbjct: 360 IERVTRSSME 369


>gi|167526114|ref|XP_001747391.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774226|gb|EDQ87858.1| predicted protein [Monosiga brevicollis MX1]
          Length = 504

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 154/392 (39%), Positives = 226/392 (57%), Gaps = 9/392 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  +  A     + KPT IQ ++IPL LQ  DV G+A+TG+GKTA+F LP+L  
Sbjct: 83  FADLGLAEVLCEACATLKFTKPTEIQRRSIPLALQGKDVIGLAETGSGKTAAFALPVLHD 142

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   + +      L+L PTRELA Q+   F   G    L  A+L+GGI    Q   L + 
Sbjct: 143 LLATKGKKEF-FALVLAPTRELAFQIRQTFNALGSPIGLKSAVLVGGIDMTTQAIALAKK 201

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             VLI TPGR++DH    K   +  +  L++DEADRML+M +   +  I +++P  R+T 
Sbjct: 202 PHVLIATPGRLVDHLENTKGFHLKALRYLIMDEADRMLNMDYEKELDKILAVIPRERRTF 261

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLL 239
           LFSATMT ++ K+    L++P ++EVN+   T +T+   + FV    Q  K C L+   L
Sbjct: 262 LFSATMTSKVGKLQRASLRDPVKVEVNSKYKTVDTLIQRYMFVP---QKFKDCYLI--YL 316

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q    + IIFC+   NV+     L   GF    +HG + Q  R+  L+ F   +  ++
Sbjct: 317 MNQLRGNSFIIFCSTCNNVMKATLVLRDLGFDAVCLHGQMSQPKRLGALAKFTSQSHTIL 376

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR G A T+  + D++    
Sbjct: 377 VATDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGHAITIATQYDVELFQR 436

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
           IE LI KK++    + S +   LE++  AQ N
Sbjct: 437 IEALIGKKMEEYPTESSQVLQLLERVSDAQRN 468


>gi|255524805|ref|ZP_05391755.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|296188658|ref|ZP_06857046.1| ATP-dependent RNA helicase DbpA [Clostridium carboxidivorans P7]
 gi|255511472|gb|EET87762.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|296046922|gb|EFG86368.1| ATP-dependent RNA helicase DbpA [Clostridium carboxidivorans P7]
          Length = 480

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 143/396 (36%), Positives = 231/396 (58%), Gaps = 20/396 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  L   ++ ++ + GY KP+ +Q + IPL+LQ  DV   +QTG+GKTA+F +P  
Sbjct: 4   IKFEDFRLGQDILKSIKNIGYKKPSKVQQQVIPLILQGKDVIVKSQTGSGKTAAFAIP-- 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I E         + LIL PTRELA Q+ ++    G+   +  + + G  P + Q K+L+
Sbjct: 62  -ICEHMEIEENDAQALILTPTRELAVQIKEDISNIGRFKRIRCSAIFGKQPMDTQKKELK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR LDH  RG + + NI+ L++DEAD ML+MGFI  +  I   +P +RQ 
Sbjct: 121 QRVHIIVGTPGRTLDHIKRGNMNLQNIKFLILDEADEMLNMGFIEEVSEIIENIPVSRQN 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLL 239
           +LFSATM + ++ +S+ +++NP ++E+     T + IE  C++    + + K +LL+ LL
Sbjct: 181 MLFSATMPEAIENLSKKYMKNPAKVEITPEKLTVDNIEQKCYI---IEENNKFSLLRNLL 237

Query: 240 --QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             ++ DT    I+FC  K NV  +   ++ + +S   IHG + Q  R+  +++FK G  +
Sbjct: 238 YIENPDT---AIVFCRTKNNVDYVTSRMKAEKYSCDKIHGGMLQNERLDTMNSFKMGEFR 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++A+D+AARG+DI +V HV N+D+P   E+YIHRIGRTGRAG  G A T     + + +
Sbjct: 295 FLIATDVAARGIDIDNVTHVINYDLPMEKESYIHRIGRTGRAGNKGTAITFSTPNEDRFL 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
             IE       D++  ++     P EK D  Q+  A
Sbjct: 355 SEIE-------DYIQMEIPKCELPTEK-DANQNKEA 382


>gi|222640112|gb|EEE68244.1| hypothetical protein OsJ_26445 [Oryza sativa Japonica Group]
          Length = 2897

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 139/372 (37%), Positives = 224/372 (60%), Gaps = 14/372 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G  P+++  +  AG++ PTPIQ +T P+ LQ  D+  IA+TG+GKT  +++P  
Sbjct: 603 MTFEATGFPPEILQEIHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTLGYLIPAF 662

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L + +    + P  L+L PTRELA+Q+ D   K+G++  ++   L GG     Q ++L
Sbjct: 663 IHLRRYQNNPMLGPTVLVLAPTRELASQIQDEAVKFGRSSRVSCTCLYGGTSKGLQLREL 722

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGAD+++ TPGR+ D     K+ ++ +  LV+DEADRMLDMGF P I+ I   +P  RQ
Sbjct: 723 ERGADIVVATPGRLNDILEMRKISLHQVSFLVLDEADRMLDMGFEPQIRKIVDEIPRNRQ 782

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK---KCALLQ 236
           TL+++AT   E+ K++ + L++P ++ +    S  E + +  +  Y +      K   L+
Sbjct: 783 TLMYTATWPKEVTKIAGDLLKDPVQVNIG---SIDELVANKSITQYVEVVPPLDKQRRLE 839

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK---QGFSVCAIHGNIDQRSRMKILSNFKE 293
           Q+L++Q+     IIFC+ KK    +C  L +   + F   +IHG+  Q  R  +L+ F+ 
Sbjct: 840 QILRAQERGSKVIIFCSTKK----MCDQLARDIGRSFGAASIHGDKSQAERDNVLNQFRT 895

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G ++T  +++D
Sbjct: 896 GRAPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQD 955

Query: 354 IKHIDAIEKLIE 365
            K+   + K++E
Sbjct: 956 WKYAGDLVKVLE 967


>gi|229506042|ref|ZP_04395551.1| cold-shock DEAD-box protein A [Vibrio cholerae BX 330286]
 gi|229510102|ref|ZP_04399582.1| cold-shock DEAD-box protein A [Vibrio cholerae B33]
 gi|229517768|ref|ZP_04407213.1| cold-shock DEAD-box protein A [Vibrio cholerae RC9]
 gi|229605573|ref|YP_002876277.1| cold-shock DEAD-box protein A [Vibrio cholerae MJ-1236]
 gi|229345804|gb|EEO10777.1| cold-shock DEAD-box protein A [Vibrio cholerae RC9]
 gi|229352547|gb|EEO17487.1| cold-shock DEAD-box protein A [Vibrio cholerae B33]
 gi|229356393|gb|EEO21311.1| cold-shock DEAD-box protein A [Vibrio cholerae BX 330286]
 gi|229372059|gb|ACQ62481.1| cold-shock DEAD-box protein A [Vibrio cholerae MJ-1236]
          Length = 653

 Score =  269 bits (688), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 221/370 (59%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 16  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 75

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N   L V  + GG     Q + L
Sbjct: 76  NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 132

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 133 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 192

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL+NP+ ++V   + T   +E  +        +K   + +LL
Sbjct: 193 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 250

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 251 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HV+N+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 310 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 369

Query: 360 IEKLIEKKVD 369
           IE++    ++
Sbjct: 370 IERVTRSSME 379


>gi|229065102|ref|ZP_04200395.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH603]
 gi|228716131|gb|EEL67850.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH603]
          Length = 481

 Score =  269 bits (688), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 135/362 (37%), Positives = 223/362 (61%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FADYALSKEIVRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +++K+S  ++ +P  IE+     T + IEH       +  +K +LL+ +   +
Sbjct: 183 FSATLPKDVEKLSRTYMDSPTHIEIKATGITTDKIEHTLFEMREE--EKLSLLKDITTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVFQQLKRINYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG +GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIEE 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|260434308|ref|ZP_05788278.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
 gi|260412182|gb|EEX05478.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
          Length = 607

 Score =  269 bits (688), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 139/371 (37%), Positives = 220/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G S  ++  + D GY +P+PIQ    P ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 59  FAGFGFSEALLRTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 118

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           LE G+   + P+ L+L PTRELA QVA++F+ Y   + +L V  + GG  F +Q   L R
Sbjct: 119 LESGQ---KTPQALVLAPTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQISALRR 175

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR++DH  +G L  + +  LV+DEAD ML MGFI  ++ I   +P  RQ +
Sbjct: 176 GVDVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQRQVV 235

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++S+ +L++P  + + T     + I    +     +  K   LQ++L +
Sbjct: 236 LFSATMPPEIRRLSKRYLKDPAEVTIRTKDQEGKRIRQRSITVPMPH--KLEALQRVLDA 293

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  IIF   K   + +  +LE  G  V  ++G++ Q  R + +   + G++ ++VA
Sbjct: 294 CGG-EGVIIFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVA 352

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N+D+P  +E Y+HRIGRTGRAGR G+A   V   + + I  +E
Sbjct: 353 TDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPRERRFIRNLE 412

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 413 RATGQPIEAME 423


>gi|319896568|ref|YP_004134761.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
 gi|317432070|emb|CBY80420.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
          Length = 613

 Score =  269 bits (688), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 143/369 (38%), Positives = 228/369 (61%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L  
Sbjct: 7   FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLLAQ 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121
           ++      + P+ L++ PTRELA QVAD  E + K    T +  L GG  ++ Q + L++
Sbjct: 67  IDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   QT 
Sbjct: 124 GAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240
           LFSATM + ++++++ F+ +P+ +++   +  A  I+  C+   Y    +K   L + L+
Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIF   K   +++   LEK GF   A++G++ Q+ R + L   +  ++ ++V
Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNRSLDIVV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 361 EKLIEKKVD 369
           E L++K ++
Sbjct: 360 EHLMKKGIN 368


>gi|290957574|ref|YP_003488756.1| helicase [Streptomyces scabiei 87.22]
 gi|260647100|emb|CBG70199.1| putative helicase [Streptomyces scabiei 87.22]
          Length = 865

 Score =  269 bits (688), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 144/374 (38%), Positives = 220/374 (58%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F DLG+ P+   A+   G + P PIQ  T+P+ L   D+ G A+TGTGKT  F LP+L  
Sbjct: 32  FRDLGIFPETAEALEAVGIITPFPIQEMTLPVALTGTDIIGQAKTGTGKTLGFGLPLLER 91

Query: 61  ----TILEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                 +E GRA+    V  P+ L++ PTREL  QV ++    GK  N+ V  + GG  +
Sbjct: 92  VVVPADVEAGRAKPEDLVDSPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAY 151

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E Q + L++G DV+I TPGR+LD   + KL + N++ LV+DEAD MLD+GF+P ++ I +
Sbjct: 152 EPQVEALKKGVDVVIGTPGRLLDLAGQKKLNLKNVKCLVLDEADEMLDLGFLPDVEKIIN 211

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKK 231
           ++P  RQT+LFSATM   +  ++  ++  P  I   +P     T+ +     Y A    K
Sbjct: 212 MLPARRQTMLFSATMPGAVIGLARRYMSQPTHIRATSPDDEGATVRNTSQHIYRAHNMDK 271

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L+ ++LQ+ D     ++FC  K+   +L   L+++GF+  A+HG++ Q +R + L  F
Sbjct: 272 PELVARILQA-DGRGLVMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAF 330

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAG  G A TLV  
Sbjct: 331 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGAKGIAITLVDW 390

Query: 352 EDIKHIDAIEKLIE 365
           +DI     I K ++
Sbjct: 391 DDIPRWQLINKALD 404


>gi|15601559|ref|NP_233190.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121588090|ref|ZP_01677839.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 2740-80]
 gi|121730005|ref|ZP_01682420.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V52]
 gi|153819412|ref|ZP_01972079.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae NCTC 8457]
 gi|153823796|ref|ZP_01976463.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae B33]
 gi|227812370|ref|YP_002812380.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae M66-2]
 gi|254849961|ref|ZP_05239311.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MO10]
 gi|298499594|ref|ZP_07009400.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MAK 757]
 gi|9658230|gb|AAF96702.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547686|gb|EAX57782.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 2740-80]
 gi|121628252|gb|EAX60768.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V52]
 gi|126510058|gb|EAZ72652.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae NCTC 8457]
 gi|126518684|gb|EAZ75907.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae B33]
 gi|227011512|gb|ACP07723.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae M66-2]
 gi|254845666|gb|EET24080.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MO10]
 gi|297541575|gb|EFH77626.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MAK 757]
          Length = 663

 Score =  269 bits (688), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 221/370 (59%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 26  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N   L V  + GG     Q + L
Sbjct: 86  NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 142

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 143 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 202

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL+NP+ ++V   + T   +E  +        +K   + +LL
Sbjct: 203 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 261 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HV+N+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 320 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 379

Query: 360 IEKLIEKKVD 369
           IE++    ++
Sbjct: 380 IERVTRSSME 389


>gi|228942602|ref|ZP_04105134.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228982168|ref|ZP_04142457.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis Bt407]
 gi|228777520|gb|EEM25798.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis Bt407]
 gi|228817028|gb|EEM63121.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326943251|gb|AEA19147.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 481

 Score =  269 bits (688), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 134/362 (37%), Positives = 221/362 (61%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPIKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++K+S  ++ +P  IE+     T + IEH          +K +LL+ +   +
Sbjct: 183 FSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIE--DEKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L +  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLNRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|89896500|ref|YP_519987.1| hypothetical protein DSY3754 [Desulfitobacterium hafniense Y51]
 gi|89335948|dbj|BAE85543.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 478

 Score =  269 bits (687), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 145/355 (40%), Positives = 218/355 (61%), Gaps = 6/355 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV---R 71
           A+   GY + TPIQ + IP +L+  D+ G AQTGTGKTA+F +P+L  L  G+  +   R
Sbjct: 68  ALAAQGYSEATPIQAEAIPHLLEGLDLLGCAQTGTGKTAAFAIPILQSLAMGQGLLKGKR 127

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
             R L+L PTRELA Q+A++F  YG N  L   ++ GG+    Q +KLE+G D+L+ TPG
Sbjct: 128 QIRALVLAPTRELATQIAESFTAYGVNLPLRTLVIFGGVGQAPQTRKLEKGIDILVATPG 187

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+LD  N+G + ++++E  V+DE D+MLDMG +  ++ I + +P  RQ +LFSATM  E+
Sbjct: 188 RLLDLINQGFIDLSHVEHFVLDETDQMLDMGMLHDVKRIITYLPRERQNMLFSATMPVEI 247

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
           +K+++  L+ P +I +    S  + IE      +   + K ALL   L++ +   + ++F
Sbjct: 248 EKLADTILKGPVKIAMTPEFSPLDIIEQEVY--FVDKANKAALLTYWLKNNE-YDSVLVF 304

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
              K     +   L K+GF+  AIHGN  Q +R + L  FK+   +++VA+D+AARGLDI
Sbjct: 305 SRTKHGADKIVKELNKKGFTAVAIHGNKSQANREQALHAFKKRKTRILVATDIAARGLDI 364

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
            ++ HV N+++P   E YIHRIGRTGRAG  GKA T    E+   +  I+K I K
Sbjct: 365 QELSHVINYNLPEVPETYIHRIGRTGRAGLGGKAITFCDFEEKPLLRDIQKRIGK 419


>gi|120600080|ref|YP_964654.1| ATP-dependent RNA helicase SrmB [Shewanella sp. W3-18-1]
 gi|146291991|ref|YP_001182415.1| ATP-dependent RNA helicase SrmB [Shewanella putrefaciens CN-32]
 gi|120560173|gb|ABM26100.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145563681|gb|ABP74616.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 419

 Score =  269 bits (687), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 144/368 (39%), Positives = 219/368 (59%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P ++ ++   G+  PT IQ +TIP  L++ D+   A TGTGKTASF+LP L
Sbjct: 1   MQFEDFHLDPSLLESLKAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPAL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +++  R      R LIL PTRELA+Q+         +  L +A++ GG+P+  Q + L
Sbjct: 61  QHLIDFPRRFSGQARILILTPTRELASQIHRYACHLATDQGLDIAIITGGVPYAPQEEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+L+ TPGR++++ ++GK     ++IL+IDEADRMLDMGF   +Q I       +Q
Sbjct: 121 AGNVDILVATPGRLMEYLDKGKFSAEEVDILIIDEADRMLDMGFSSVVQAIALEAQGRKQ 180

Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            +LFSAT+    +Q+ +   L++P  I+V+ P S    I H ++        K ALL  L
Sbjct: 181 NMLFSATLEGGGVQRFAREVLKDPIEIDVDAPRSEKAKI-HQWIHLADDKEHKFALLCHL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ +D +K  I+F   +  V +L   L K G     + G+++Q+ R + LS F +G + +
Sbjct: 240 LRQED-VKRTIVFVKTRDIVTSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI D+ HV NFD+P  A+ YIHRIGRTGRAG  G A +L    D++ + 
Sbjct: 299 LLATDVAARGIDIDDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVG 358

Query: 359 AIEKLIEK 366
            IE+ IE+
Sbjct: 359 KIERYIEQ 366


>gi|229112867|ref|ZP_04242398.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock1-15]
 gi|296505875|ref|YP_003667575.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|228670546|gb|EEL25859.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock1-15]
 gi|296326927|gb|ADH09855.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
          Length = 481

 Score =  269 bits (687), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 134/362 (37%), Positives = 222/362 (61%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++K+S  ++ +P  IE+     T + IEH          +K +LL+ +   +
Sbjct: 183 FSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIE--DEKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|229148341|ref|ZP_04276624.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST24]
 gi|228635135|gb|EEK91682.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST24]
          Length = 481

 Score =  269 bits (687), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 134/362 (37%), Positives = 222/362 (61%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++K+S  ++ +P  IE+     T + IEH          +K +LL+ +   +
Sbjct: 183 FSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIE--DEKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|319425286|gb|ADV53360.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 419

 Score =  269 bits (687), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 144/368 (39%), Positives = 219/368 (59%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P ++ ++   G+  PT IQ +TIP  L++ D+   A TGTGKTASF+LP L
Sbjct: 1   MQFEDFHLDPSLLESLKAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPTL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +++  R      R LIL PTRELA+Q+         +  L +A++ GG+P+  Q + L
Sbjct: 61  QHLIDFPRRFSGQARILILTPTRELASQIHRYACHLATDQGLDIAIITGGVPYAPQEEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+L+ TPGR++++ ++GK     ++IL+IDEADRMLDMGF   +Q I       +Q
Sbjct: 121 AGNVDILVATPGRLMEYLDKGKFSAEEVDILIIDEADRMLDMGFSSVVQAIALEAQGRKQ 180

Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            +LFSAT+    +Q+ +   L++P  I+V+ P S    I H ++        K ALL  L
Sbjct: 181 NMLFSATLEGGGVQRFAREVLKDPIEIDVDAPRSEKAKI-HQWIHLADDKEHKFALLCHL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ +D +K  I+F   +  V +L   L K G     + G+++Q+ R + LS F +G + +
Sbjct: 240 LRQED-VKRTIVFVKTRDIVTSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI D+ HV NFD+P  A+ YIHRIGRTGRAG  G A +L    D++ + 
Sbjct: 299 LLATDVAARGIDIDDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVG 358

Query: 359 AIEKLIEK 366
            IE+ IE+
Sbjct: 359 KIERYIEQ 366


>gi|73662111|ref|YP_300892.1| ATP-dependent RNA helicase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123643052|sp|Q49Z29|Y802_STAS1 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SSP0802
 gi|72494626|dbj|BAE17947.1| putative ATP-dependent RNA helicase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 506

 Score =  269 bits (687), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 145/384 (37%), Positives = 228/384 (59%), Gaps = 15/384 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S K+   +   G+ + TPIQ ++IPL L+  DV G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDKMAETLQSMGFNEATPIQKESIPLALEGKDVLGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +    A     ++LIL PTRELA QVA++ + + K  N+ V  + GG+P + Q K L++
Sbjct: 63  KV----ADQEGVQSLILAPTRELAMQVAESLKAFAKGQNIQVVTVFGGMPIDRQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180
           G  +++ TPGR++DH NR  L  N+I  L++DEAD M++MGFI  ++ I   +P   RQT
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMKFIMDKIPAEQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +Q + + F+++P  ++      +   IE  +  T  +  +K       L 
Sbjct: 179 MLFSATMPKAIQTLVQQFMKSPVIVKTMNNEMSDPQIEEYY--TIVKELEKFDTFTSFLD 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   + ++V
Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQLDILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  I
Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGVAITFVNPIEMDYIRQI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E+  +++       +++L PP  K
Sbjct: 356 EQANKRQ-------MTALRPPHRK 372


>gi|218233461|ref|YP_002370229.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|229153612|ref|ZP_04281789.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1550]
 gi|218161418|gb|ACK61410.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228629841|gb|EEK86493.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1550]
          Length = 481

 Score =  269 bits (687), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 134/362 (37%), Positives = 222/362 (61%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++K+S  ++ +P  IE+     T + IEH          +K +LL+ +   +
Sbjct: 183 FSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIE--DEKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|213966785|ref|ZP_03394936.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           T1]
 gi|301383294|ref|ZP_07231712.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato Max13]
 gi|302062467|ref|ZP_07254008.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato K40]
 gi|302133449|ref|ZP_07259439.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213928635|gb|EEB62179.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           T1]
          Length = 442

 Score =  269 bits (687), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 220/371 (59%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               +E  +      R L+L PTRELA QV ++  +Y ++  L+     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD + +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLYRQKAIRFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A +++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++        ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG+ G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGQTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVD 369
           AIE L  + ++
Sbjct: 358 AIEVLTRQTLE 368


>gi|212224191|ref|YP_002307427.1| DEAD/DEAH box RNA helicase [Thermococcus onnurineus NA1]
 gi|212009148|gb|ACJ16530.1| DEAD/DEAH box RNA helicase [Thermococcus onnurineus NA1]
          Length = 403

 Score =  269 bits (687), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 152/419 (36%), Positives = 237/419 (56%), Gaps = 27/419 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59
           M F +LGLS   + AV   G+ +PT IQ + IP +L    D+ G +QTGTGKTA+F LP+
Sbjct: 1   MSFENLGLSEATLVAVRRKGFSQPTDIQKEVIPRLLSGDADIIGQSQTGTGKTAAFALPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  +++    V+    +IL PTRELA QVAD  +       + V  + GG P   Q + L
Sbjct: 61  IEAIDEKEKSVQ---AIILAPTRELALQVADEIKSLRGRKRVYVYAVYGGQPIGPQIRAL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG  V++ TPGR+LDH  RG L ++ ++  ++DEADRMLDMGFI  I+ I    P  ++
Sbjct: 118 ERGTHVVVGTPGRVLDHIRRGTLDLSKVKFFILDEADRMLDMGFIDDIEAIFRETPKKKR 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  E+ +++  ++ + + I+V++       +E  ++      ++K + L+++L
Sbjct: 178 VLMFSATMPREILRLARRYMNDYEVIKVSSDELVPGMVEQEYIEVVP--ARKFSTLKKIL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S D    GI+FC  K+    L   L KQG+S  A++G++ Q +R +    FK    +++
Sbjct: 236 -SDDFY--GIVFCATKRETRELSEKLRKQGYSAEALNGDMSQAARERTFWRFKTKRTRIL 292

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ H+ N+ +P  AE+Y+HRIGRTGR G+ GKA T +   + K +  
Sbjct: 293 VATDVAARGLDVQDISHIVNYSLPMTAEDYVHRIGRTGRMGKKGKAVTFIMPGEFKRLRY 352

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK---------STGFDRR 409
           I  +    VD    +LS   P        +++   K    PQ+         S G+ RR
Sbjct: 353 IASV--AGVDIQKSELSEELP-------REYHERYKREERPQRYRKNGRRDYSRGYSRR 402


>gi|330873518|gb|EGH07667.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330967687|gb|EGH67947.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 442

 Score =  269 bits (687), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 220/371 (59%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               +E  +      R L+L PTRELA QV ++  +Y ++  L+     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD + +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLYRQKAIKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A +++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++        ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG+ G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGQTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVD 369
           AIE L  + ++
Sbjct: 358 AIEVLTRQTLE 368


>gi|163751207|ref|ZP_02158436.1| ATP-dependent RNA helicase DeaD [Shewanella benthica KT99]
 gi|161329036|gb|EDQ00109.1| ATP-dependent RNA helicase DeaD [Shewanella benthica KT99]
          Length = 611

 Score =  269 bits (687), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 144/373 (38%), Positives = 233/373 (62%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS  ++ ++ + GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L
Sbjct: 6   LTFRELGLSEPLLRSLDELGYEKPTPIQAASIIPLMAGKDILGQAQTGTGKTGAFALPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           + ++     +  P+ L+L PTRELA QVA+ F  Y K    L V  + GG     Q   L
Sbjct: 66  SNIDPA---INAPQILVLAPTRELAVQVAEAFATYAKFVKGLHVLPIYGGQSMHQQLNAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG  V++ TPGR++DH  RG L +++++ +V+DEAD ML MGFI  I+ I    P  RQ
Sbjct: 123 RRGPQVIVGTPGRVMDHMRRGTLKLDSLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM +++++V+  +L +P  +++   ++T ET E  FV   +Q++K  AL++ +L
Sbjct: 183 LALFSATMPEQIKRVANKYLTDPIHVKIAATTATVETTEQRFVQV-SQHNKLEALVR-VL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + + T +  IIF   + + V L   LE +G++   +HG+++Q++R + +   K G++ ++
Sbjct: 241 EVEKT-EGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGSLDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  + HV N+D+P   E YIHRIGRTGRAGR G A   V   +++ +  
Sbjct: 300 IATDVAARGLDVERIRHVINYDIPYDTEAYIHRIGRTGRAGRTGMAILFVTHREMRMLRT 359

Query: 360 IEKLIEKKVDWLN 372
           IE+  + ++  ++
Sbjct: 360 IERATKSRISPMD 372


>gi|229000239|ref|ZP_04159808.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock3-17]
 gi|228759571|gb|EEM08548.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock3-17]
          Length = 481

 Score =  269 bits (687), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 222/364 (60%), Gaps = 10/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS ++V A+    Y +PT +Q K IP+ L++ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FKEYALSKEIVRALTSLKYEQPTEVQGKVIPVALEKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ LIL PTRELA QV ++    G+   +    + G  PF  Q  +L++ 
Sbjct: 66  IEWEENK---PQALILTPTRELAVQVKEDITNIGRFKRIKATAVYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G   +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTDRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL--LQ 240
           FSAT+ ++++ +S  ++++P  IE+     T + IEH  +    +  +K +LLQ +  L+
Sbjct: 183 FSATLPEDVENLSHTYMKSPTHIEIKASGITTDKIEHILLEVREE--EKFSLLQDITTLE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D+    IIFC  ++NV ++   L++ G+    IHG + Q  R  ++++FK G  + +V
Sbjct: 241 NPDSC---IIFCRTQENVDHVFRQLKRSGYPCDKIHGGMIQEDRFAVMNDFKRGKFRYLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T V   + + +  I
Sbjct: 298 ATDVAARGIDIENITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFVTPYEERFLVEI 357

Query: 361 EKLI 364
           E+ I
Sbjct: 358 EEYI 361


>gi|78486222|ref|YP_392147.1| DEAD/DEAH box helicase-like [Thiomicrospira crunogena XCL-2]
 gi|78364508|gb|ABB42473.1| ATP-dependent RNA helicase [Thiomicrospira crunogena XCL-2]
          Length = 401

 Score =  269 bits (687), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 149/362 (41%), Positives = 220/362 (60%), Gaps = 3/362 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L PK++ A+ +  Y KPTPIQ + IP +L   DV   A TGTGKTA+FVLP L
Sbjct: 1   MTFEELDLDPKLLTAIEEQHYHKPTPIQAEAIPEMLLSKDVLAGAATGTGKTAAFVLPAL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L       R PR LIL PTRELA Q+    ++ G +      ++ GG   + Q + L+
Sbjct: 61  QFLLDDPRPSRKPRVLILAPTRELAFQIHKVVKQLGAHCPFESNVVTGGFASDKQLEILQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+L+ TPGR+L+  ++  + +++IE+L+IDEADRMLDMG  P +  +   +P   Q 
Sbjct: 121 SKIDILVATPGRLLNIMSKEFIDLSDIELLIIDEADRMLDMGQGPDVLALIEAIPGDFQA 180

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             FSAT+    + K +E  L +P+ I+VN P+  +E I+  +V      + K ALL+ +L
Sbjct: 181 ACFSATLAGSGITKFAEEVLDSPEIIQVNAPNEKSEQIQQ-WVYLANDKAHKKALLKAIL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + + T ++ I+FCN+K   + L   L+ +  S   +HG+  Q  R++    FK+G I+++
Sbjct: 240 EDE-TCQSAIVFCNKKDRAIELADWLQNEHISSTVLHGDFIQAKRLEKTQKFKQGKIKVL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI +V HV N+DVP R + YIHRIGRTGRA + G A  LV + DI ++  
Sbjct: 299 VATDVAARGLDILNVTHVINYDVPYRGDIYIHRIGRTGRAQQVGIAINLVERHDITNLQR 358

Query: 360 IE 361
           IE
Sbjct: 359 IE 360


>gi|316965399|gb|EFV50121.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
          Length = 1007

 Score =  269 bits (687), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 141/378 (37%), Positives = 221/378 (58%), Gaps = 30/378 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           + + G   +++  ++  GY +PTPIQ + IP+ LQ  DV G+A+TG+GKTA+F++P+L  
Sbjct: 584 WLEAGFPTEILDVIMKIGYTEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLIPLLCF 643

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ++++     + P  +I+ PTRELA Q+ +   K+G    +    +IGG+  E Q  KL 
Sbjct: 644 VMIKREEDVDQGPYAVIMAPTRELAQQIEEEANKFGGPLGVRTVSVIGGLSREEQGFKLR 703

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--- 177
            G +++I TPGR++D      L++N    +++DEAD+MLDMGF PY+QNI S +P T   
Sbjct: 704 MGCEIVIATPGRLVDVLENRYLVLNQCTYVILDEADKMLDMGFEPYVQNILSYMPVTNLK 763

Query: 178 ----------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
                                 RQT++F+ATM+  +++++ N+L+ P  + +       E
Sbjct: 764 PDTEEAEDEKALLNNFYSKKKFRQTVMFTATMSSAVERLARNYLRRPAVVYIGAIGKPTE 823

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
            +E   V   ++  K+  L+Q L +  +     IIF NQKK    L   LEK GF+ CA+
Sbjct: 824 RVEQ-IVYMVSESEKRKKLVQILEKGIEPPI--IIFVNQKKGADLLARGLEKLGFNPCAL 880

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG   Q +R   L++ K+G+  ++VA+D+A RG+DI DV  V N+D+    E+Y HRIGR
Sbjct: 881 HGGKGQDARDYALASLKDGSKDILVATDVAGRGIDIKDVSLVLNYDMAKSIEDYTHRIGR 940

Query: 336 TGRAGRHGKAFTLVAKED 353
           TGRAG+ GKA T + KED
Sbjct: 941 TGRAGKSGKAITFLTKED 958


>gi|30023480|ref|NP_835111.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|229130700|ref|ZP_04259653.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-Cer4]
 gi|29899041|gb|AAP12312.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|228652717|gb|EEL08602.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-Cer4]
          Length = 481

 Score =  269 bits (687), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 134/362 (37%), Positives = 222/362 (61%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++K+S  ++ +P  IE+     T + IEH          +K +LL+ +   +
Sbjct: 183 FSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIE--DEKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|330952956|gb|EGH53216.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae Cit 7]
          Length = 442

 Score =  269 bits (687), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 146/371 (39%), Positives = 218/371 (58%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               +E  +      R L+L PTRELA QV ++  +Y ++  LT     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG DVL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRRGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A +++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++        ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVD 369
           AIE L  + ++
Sbjct: 358 AIEVLTRQTLE 368


>gi|317132017|ref|YP_004091331.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315469996|gb|ADU26600.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 530

 Score =  269 bits (687), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 140/364 (38%), Positives = 226/364 (62%), Gaps = 11/364 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLS  V+ A+   G+ +P+ IQ + IP++L+ +DV G AQTGTGKT ++  P++++
Sbjct: 6   FAKLGLSEDVLKAIDLMGFEEPSQIQTQAIPVILEGNDVIGQAQTGTGKTLAYSAPVISL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E G  +V+    LIL PTRELA QV D   +  +  + T   + GG P + Q + L++G
Sbjct: 66  MEHGPHQVQ---ALILVPTRELAIQVNDELVRINRFTHFTSIPVYGGQPIDRQIRALQKG 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGRILDH  RG +  +++   V+DE+D ML+MGFI  IQ +   +P  RQ+LL
Sbjct: 123 VDIVVATPGRILDHIRRGTVDFSHVRFFVLDESDEMLNMGFIDDIQAVLDTLPAERQSLL 182

Query: 183 FSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           FSATM  +++K+++  ++ + K I +   + TA   E  +  V    ++   C +L    
Sbjct: 183 FSATMPMQIRKLAQQHMKPDVKNIVIAKSTLTATLTEQFYFEVKHRDRFETLCRIL---- 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D  ++ IIFC  K+ V  L  +++ +G+ V  +HG++ Q  R   L  F++G +  +
Sbjct: 239 -DVDEPESAIIFCRTKRGVDELVENMQSRGYIVEGMHGDMGQNQRQNTLKKFRDGNLDFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI ++ HV N+++P  AE+Y+HRIGRTGRA R G A++LV   +   +  
Sbjct: 298 VATDVAARGIDIENISHVINYELPEDAESYVHRIGRTGRANRTGIAYSLVTPREYIILKQ 357

Query: 360 IEKL 363
           IE++
Sbjct: 358 IERV 361


>gi|289705155|ref|ZP_06501559.1| ATP-dependent RNA helicase DeaD family protein [Micrococcus luteus
           SK58]
 gi|289558183|gb|EFD51470.1| ATP-dependent RNA helicase DeaD family protein [Micrococcus luteus
           SK58]
          Length = 470

 Score =  269 bits (687), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 142/375 (37%), Positives = 214/375 (57%), Gaps = 16/375 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FAD G+ PK+V A+   G V P PIQ  T+P+ L  HD+ G A+TGTGKT  F +P L  
Sbjct: 39  FADFGVHPKIVEALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPALQR 98

Query: 61  ----------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                      +  KG A    P+ LI+ PTRELA QVA +         L +A + GG 
Sbjct: 99  AIGPGEPGWDALEAKGTAGA--PQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGR 156

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
            +E Q ++L+RG ++++ TPGR++D   +  L ++ +  +V+DEAD MLD+GF+P ++ +
Sbjct: 157 AYEPQIEELQRGIEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETL 216

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYS 229
            + VP  RQT+LFSATM   +  ++  ++  P  I    P     T +      Y A + 
Sbjct: 217 LAAVPAVRQTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHM 276

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            K  L+ + LQ++   +  IIF   K+    +   L  +GF+  A+HG++ Q +R + L 
Sbjct: 277 DKDELVARALQAEGRGRT-IIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALR 335

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+ G + ++VA+D+AARG+D+ DV HVFNF  P   + Y+HR+GRTGRAG  G A TLV
Sbjct: 336 AFRNGKVDILVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLV 395

Query: 350 AKEDIKHIDAIEKLI 364
             ED+     I+K +
Sbjct: 396 DWEDMPRWSLIDKAL 410


>gi|209518020|ref|ZP_03266851.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209501524|gb|EEA01549.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 532

 Score =  269 bits (687), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 147/388 (37%), Positives = 222/388 (57%), Gaps = 32/388 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLS  VV A+  AGY  PTP+Q + +P  +   D+   + TG+GKTA+F+LP +  
Sbjct: 38  FASLGLSADVVSALTAAGYEHPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 97

Query: 63  L-----------------EKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNY-N 100
                             + GR R    V  P  L+L PTRELA QV      YGK+   
Sbjct: 98  FAQLQKAQASQPREPRPADGGRGRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKR 157

Query: 101 LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160
           L    ++GG+ +  Q   L +  ++L+ TPGR++DH  RG++ ++ ++ILV+DEADRMLD
Sbjct: 158 LRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLD 217

Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV----NTPSSTAET 216
           MGFI  I  I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+       ++ A+T
Sbjct: 218 MGFIDDIDTIVAETPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRTNIAQT 277

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
           + +           K  LL  LL+    +   I+F   K +   L   L   GF   A+H
Sbjct: 278 VHYV-----DDRDHKDRLLDHLLRDAG-LDQAIVFTATKMDADQLAGRLADAGFESAALH 331

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRT
Sbjct: 332 GDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRT 391

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           GRAGR G A +LV   +   +  IE+ +
Sbjct: 392 GRAGRSGVAVSLVHHAEQGALKRIERFV 419


>gi|218889855|ref|YP_002438719.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa LESB58]
 gi|254236766|ref|ZP_04930089.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa C3719]
 gi|254242553|ref|ZP_04935875.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 2192]
 gi|308154507|ref|NP_252550.3| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PAO1]
 gi|32363412|sp|Q9HXE5|RHLB_PSEAE RecName: Full=ATP-dependent RNA helicase rhlB
 gi|122261039|sp|Q02S21|RHLB_PSEAB RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739542|sp|B7UUT0|RHLB_PSEA8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|9950039|gb|AAG07248.1|AE004803_4 ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PAO1]
 gi|115587113|gb|ABJ13128.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168697|gb|EAZ54208.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa C3719]
 gi|126195931|gb|EAZ59994.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 2192]
 gi|218770078|emb|CAW25840.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa LESB58]
          Length = 397

 Score =  269 bits (687), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 143/373 (38%), Positives = 226/373 (60%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  L+P ++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ ++T 
Sbjct: 11  FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQ 70

Query: 62  ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L+    + R    PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K+
Sbjct: 71  LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQ 130

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 131 LEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 190

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT TD++  +++ +  +P  +E+   +  ++T+E    A     S K  LL
Sbjct: 191 GERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAG--SDKYKLL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ +Q+  +  ++F N+K  V  +   L K G S   + G++ Q  R++ L  F+EG 
Sbjct: 249 YNLV-AQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 308 IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAF 367

Query: 356 HIDAIEKLIEKKV 368
            +  IE+L+ +K+
Sbjct: 368 ALPPIEELLGRKI 380


>gi|330969509|gb|EGH69575.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 442

 Score =  269 bits (687), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 146/371 (39%), Positives = 218/371 (58%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               +E  +      R L+L PTRELA QV ++  +Y ++  LT     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG DVL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRRGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A +++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++        ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVD 369
           AIE L  + ++
Sbjct: 358 AIEVLTRQTLE 368


>gi|209693767|ref|YP_002261695.1| ATP-dependent RNA helicase RhlB [Aliivibrio salmonicida LFI1238]
 gi|226739529|sp|B6EPA4|RHLB_ALISL RecName: Full=ATP-dependent RNA helicase rhlB
 gi|208007718|emb|CAQ77831.1| ATP-dependent RNA helicase RhlB [Aliivibrio salmonicida LFI1238]
          Length = 434

 Score =  269 bits (687), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 151/384 (39%), Positives = 226/384 (58%), Gaps = 13/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FADLGL P+V+  +   G++  TPIQ K +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADLGLEPQVLDGLNAKGFINCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLAATFNH 70

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            + T   +GR ++  PR +I+ PTRELA Q+ ++ E    +  L  AL  GG  +E Q K
Sbjct: 71  LLTTPAPEGR-KITQPRAIIMAPTRELAIQIYNDAESLIASTGLKAALAYGGERYEKQQK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
            +E G D+LI T GRI+D + +G++    I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VIEAGVDILIGTTGRIIDFYKQGQIDFKAIQVVVLDEADRMFDLGFIKDIRFVFRRMPAP 189

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234
             R  +LFSAT++  +Q+++   +Q P+ + V     T   I E  F   Y     K AL
Sbjct: 190 AERLNMLFSATLSYRVQELAFEHMQEPEHVVVEPDQKTGHLITEELF---YPSNDHKMAL 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ L++ ++     IIF N K     +   L      V  + G++ Q+ R +IL  F +G
Sbjct: 247 LQTLIE-EEWPDRAIIFANTKHKCELVWGHLAADKHRVGLLTGDVPQKKRERILEEFTKG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARGL IP V HVFNFD+PN AE+Y+HRIGRTGRAG  G + +   +E  
Sbjct: 306 EVDILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGESGNSISFACEEYA 365

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL 378
            ++ AIE+ IE  +   + D S+L
Sbjct: 366 INLPAIEEYIEHSIPQSDYDTSAL 389


>gi|218900583|ref|YP_002448994.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|218541686|gb|ACK94080.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
          Length = 481

 Score =  269 bits (687), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 224/364 (61%), Gaps = 10/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ--LLQ 240
           FSAT+ ++++K+S  ++ +P  IE+     T + IEH      A   +K +LL+   +++
Sbjct: 183 FSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFE--AIEDEKFSLLKDVTMIE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D+    IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +V
Sbjct: 241 NPDSC---IIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ I
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEI 357

Query: 361 EKLI 364
           E  I
Sbjct: 358 EDYI 361


>gi|326491449|dbj|BAJ94202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 674

 Score =  269 bits (687), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 138/351 (39%), Positives = 213/351 (60%), Gaps = 8/351 (2%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-PRTLI 77
           AG+  PTPIQ ++ P+ L   DV  IA+TG+GKT  ++LP    +++ +   R  P  L+
Sbjct: 30  AGFPSPTPIQAQSWPIALLNQDVVAIAKTGSGKTLGYLLPGFMHIKRMQNSTRSGPTVLV 89

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           L PTRELA Q+ +   K+G++  ++   L GG P   Q + LERG DV++ TPGR+ D  
Sbjct: 90  LAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRDLERGVDVVVATPGRLNDIL 149

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
              K+ +  +  LV+DEADRMLDMGF P I+ I   +P  RQTL+++AT   E++++++ 
Sbjct: 150 EMRKISLKQVSYLVLDEADRMLDMGFEPQIRKIVRDIPSGRQTLMYTATWPKEVRRIADE 209

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQY---SKKCALLQQLLQSQDTMKNGIIFCNQ 254
            L +P ++ +    S  E + +  +  + +    S+K   L+Q+L+S D+    +IFC  
Sbjct: 210 LLVHPVQVTIG---SVDELVANKAITQHVEVITPSEKLRRLEQILRSHDSGSKILIFCTT 266

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K+    L  +L +Q F   AIHG+  Q  R K+LS F+ G   ++VA+D+AARGLDI D+
Sbjct: 267 KRMCDQLSRTLNRQ-FGAAAIHGDKSQNEREKVLSQFRSGRAPILVATDVAARGLDIKDI 325

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
             V N+D P   E+Y+HRIGRTGRAG  G A+T +  +D K+   + K++E
Sbjct: 326 RVVINYDFPTGVEDYVHRIGRTGRAGATGLAYTFLCDQDSKYASDLIKILE 376


>gi|242280284|ref|YP_002992413.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
 gi|242123178|gb|ACS80874.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
          Length = 400

 Score =  269 bits (687), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 151/419 (36%), Positives = 238/419 (56%), Gaps = 21/419 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F       +++  +  AGY  PTP+Q+K IP VLQ  DV G+AQTGTGKTA+FVLP+L
Sbjct: 1   MSFDQFKFDMRLISGIRSAGYEVPTPVQLKAIPAVLQGRDVMGLAQTGTGKTAAFVLPVL 60

Query: 61  TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L    A  R P + L+L PTRELA Q  + F + G+   +  A + GG     Q K++
Sbjct: 61  QRLLDEEAEKRGPVKVLVLSPTRELALQTHETFIELGRQTGIRSAAVYGGAGIGKQAKEV 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   V+  TPGR+LD   R ++ ++ ++ L++DEADRMLDMGF+  ++ + + +P  RQ
Sbjct: 121 KK-VTVINATPGRLLDLLEREEIDLSQVDTLILDEADRMLDMGFMDEVEKVLAKLPAERQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVN-TPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            L+FSATM D +  +S+N L +P+ + V  T S+   ++  C V  + + S       ++
Sbjct: 180 NLMFSATMPDAINSLSKNILHDPEVVRVAVTVSADGVSLYSCPVPVHLKQS-----FLKV 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L ++   +  ++F   K+    L   L K G +   +HG++ Q  R + L+ FK G   +
Sbjct: 235 LFNEIEFERVLVFVRTKRWARRLAQRLAKGGLAAADLHGDLSQSKRNRTLNGFKFGDFTV 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+D  ++ HV N+D+P+  E ++HR GRTGRA   G A+T VA ED   + 
Sbjct: 295 LVATDLAARGIDCSNISHVINYDMPDNVEIFVHRTGRTGRADAKGTAYTFVADEDKARLA 354

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            IE+ +   ++    D  + N P  K+D +         P+P K+    R+K+N   +K
Sbjct: 355 EIEESLGYGLELFYLDTFNYNAP--KLDFSA--------PVPDKN---GRKKRNTQHKK 400


>gi|77359091|ref|YP_338666.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874002|emb|CAI85223.1| ATP-dependent RNA helicase with nucleoside triP hydrolase domain,
           putative cold-shock protein [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 420

 Score =  269 bits (687), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 149/419 (35%), Positives = 245/419 (58%), Gaps = 11/419 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F+D  ++P+VV  + ++G+   TPIQ K +P + +  D+ G AQTGTGKT +F+      
Sbjct: 6   FSDFAIAPEVVAGLTESGFEYCTPIQAKCLPFICEGRDIAGQAQTGTGKTLAFLTATCHR 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  +A  + PR LI+ PTRELA Q+  + +    + NL + L+ GG  +E Q  +LE+
Sbjct: 66  LLQSSKAPSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGEDYEKQRAQLEK 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQ 179
           G D+LI T GR++D + +G   +N IE++V+DEADRM D+GFI  I+ +   +P T  R 
Sbjct: 126 GVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMFHRMPDTSKRL 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++  +Q+++   + NP+ +++     T + I+      +     K  LL  L+
Sbjct: 186 NLLFSATLSYRVQELAFEHMTNPEHVQIEPDVKTGKRIQEELF--HPSQEDKIKLLLTLI 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++  +  IIF N K +   +   L+  G  V  + G+++Q+ R  IL+ F +G +  +
Sbjct: 244 E-EEWPEKAIIFANTKHSCETVYAWLKADGHRVGMLTGDVNQKKRQSILAEFSKGDLDFL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGL IP+V HVFNFD+P+  E+Y+HRIGRT RAG  G A +   ++   ++  
Sbjct: 303 VATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTARAGASGHAISFACEQYAYNLHE 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN-NPIPQKSTGFDRRKKNYSSQK 417
           IE+ I+  +   + D ++L   L K  I    H ++N +  P+  +    R+ N S QK
Sbjct: 363 IEEYIDHSIPLSHYDKTALLDDLTKPTI----HRKRNFSTGPRNRSNNSGRRPNNSYQK 417


>gi|77361885|ref|YP_341460.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76876796|emb|CAI88018.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 434

 Score =  268 bits (686), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 140/368 (38%), Positives = 221/368 (60%), Gaps = 13/368 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F++LGL P+++  + D  Y +PTPIQ K IP VL   D+   A TG+GKTA+F LP+L  
Sbjct: 10  FSELGLIPELLARLTDLEYTQPTPIQAKAIPSVLAGSDLIAGANTGSGKTATFALPILQK 69

Query: 61  TILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEA 114
             LE+G     ++      LIL PTRELA QVAD+ + Y  N+N  +    + GG+    
Sbjct: 70  MFLEQGSKSAASKGNFVTGLILVPTRELATQVADSVKSYSANFNGAIKTIAVFGGVSVNT 129

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L  GAD+++ TPGR+LD  +   + ++ +  LV+DEADRML +GF   +  + +L+
Sbjct: 130 QMQALRGGADIIVATPGRLLDLISSNAIKLDKLNTLVLDEADRMLSLGFTEELAELLALM 189

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  +QT+LFSAT  ++++ ++++ L +P  I+V +   +   ++  F     +   K  +
Sbjct: 190 PAKKQTMLFSATFPEQVKLLTQDLLNDPVEIQVQSKDEST-LVQRVFSVNKGE---KTTV 245

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L+++    +  +IF N KK+  +L   LEK+G +    HG+  Q  R +++  FK G
Sbjct: 246 LAHLIKTHK-WRQALIFVNAKKDCEHLAQKLEKRGVNAQVFHGDKGQSERTRVIEKFKAG 304

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I++++A+D+AARGLDI  +  V NF++P    +Y+HRIGR+GRAG  G A +LV  ED+
Sbjct: 305 EIEVLIATDIAARGLDIEKLPVVINFNLPRSPADYMHRIGRSGRAGEVGLALSLVDYEDL 364

Query: 355 KHIDAIEK 362
            H   IEK
Sbjct: 365 HHFKIIEK 372


>gi|28871796|ref|NP_794415.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855048|gb|AAO58110.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 442

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 220/371 (59%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               +E  +      R L+L PTRELA QV ++  +Y ++  L+     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD + +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLYRQKAIRFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A +++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++        ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNDVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG+ G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGQTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVD 369
           AIE L  + ++
Sbjct: 358 AIEVLTRQTLE 368


>gi|163940245|ref|YP_001645129.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|163862442|gb|ABY43501.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
          Length = 450

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 152/423 (35%), Positives = 242/423 (57%), Gaps = 28/423 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 66  KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ +++ P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMEEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L   L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDDLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ-------HNHARKNNPIPQKSTGFDRRKKNY 413
           EK              +L  P+++  I Q        N      P P+KS  + +R    
Sbjct: 360 EK--------------TLGAPIQRQIIEQPMIKNVDENGKPVQKPAPKKSGQYRQRDSRE 405

Query: 414 SSQ 416
            S+
Sbjct: 406 GSR 408


>gi|147921542|ref|YP_684642.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
 gi|110620038|emb|CAJ35316.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
          Length = 497

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 222/368 (60%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L L+P +V AV + G+ + TPIQ + IPL ++  D+ G A+TGTGKTA+F +PM+
Sbjct: 2   VKFTELNLTPSIVRAVHEMGFEEATPIQEQAIPLAMEGKDLIGQARTGTGKTAAFGIPMV 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +   R   +  + L++ PTRELA QVA+   + GK   +    + GG  F +Q K LE
Sbjct: 62  EAI---RPTSKGVQGLVVVPTRELAVQVAEELTRIGKVRGIRSVAIYGGQDFRSQVKALE 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+L+H  R  +  ++I I V+DEAD+MLDMGFI   + I   +P  RQT
Sbjct: 119 ELPHIVVGTPGRLLEHMRREYVRTSDIRIAVLDEADKMLDMGFIDEAEKILKKLPERRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT++  +Q ++  +L++P+ IE      T  T    ++    +  +K   L +LL 
Sbjct: 179 LLFSATLSPPVQMLARKYLKDPELIEFEEEGITVPTTVQYYIEMPEK--QKFEALTRLL- 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+  +  I+F   +  V  L  +L ++G+    +HG++ Q  R   L  FK G + ++V
Sbjct: 236 DQEKPELAIVFVATRIRVGELAKALVERGYHALGLHGDLLQYQRENTLDKFKAGEVSILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   ++Y+HRIGRTGRAG  G A T V  +D   ++AI
Sbjct: 296 ATDVAARGLDIQGVTHVYNFDIPRDPDSYVHRIGRTGRAGNAGTATTFVTPKDKTALEAI 355

Query: 361 EKLIEKKV 368
           E+ I+ ++
Sbjct: 356 EQAIDHQI 363


>gi|89096443|ref|ZP_01169336.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
 gi|89089297|gb|EAR68405.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
          Length = 543

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 139/363 (38%), Positives = 223/363 (61%), Gaps = 7/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F  LG+S  ++  +   G  +PT +Q K IP+VL+  D+   AQTGTGKT +F+LP+L
Sbjct: 22  LNFKHLGISDPLIHKLAAQGIDEPTAVQEKAIPIVLEGRDIIAQAQTGTGKTLAFILPIL 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             ++      +    LI+ PTRELA Q+    +K  ++  +L V  + GG   E Q  KL
Sbjct: 82  EKIDPSNGSTQ---ALIVTPTRELALQITSEVKKLIEDMPDLNVLAVYGGQDVEKQLHKL 138

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +R   +++ TPGR+LDH  RG + ++ +  LV+DEAD+ML +GF+  ++ I S  P +RQ
Sbjct: 139 QRQTQIVVATPGRLLDHLRRGTVQLDEVSFLVLDEADQMLHIGFLNEMELIISQTPASRQ 198

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM D+++K+S+  L+ P+ I +       + IE   + T    +K+ AL+ ++ 
Sbjct: 199 TMLFSATMPDDIRKLSKKHLKEPESIRIEKTFVPEKAIEQLAIFT-TDRAKQNALISRIR 257

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +  +   IIFC   +    L  +L+ Q FS   +HG++ Q  R K++  F+   IQ +
Sbjct: 258 EDRPFL--AIIFCRTIRRATKLYDALKSQRFSCEELHGDLTQAKREKVMKKFRNAEIQFL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  V HV+N+D+P  +E+Y+HRIGRTGRAG+ G A T  A++D   + A
Sbjct: 316 IATDVAARGLDVEGVTHVYNYDIPQDSESYVHRIGRTGRAGKDGLAVTFYAEKDEAALKA 375

Query: 360 IEK 362
           IE+
Sbjct: 376 IEQ 378


>gi|58584965|ref|YP_198538.1| superfamily II DNA/RNA helicase [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|58419281|gb|AAW71296.1| Superfamily II DNA/RNA helicase [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
          Length = 408

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 147/360 (40%), Positives = 216/360 (60%), Gaps = 14/360 (3%)

Query: 2   DFADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F ++GL P ++   LD   +  PTP+Q + IPL L+  D+ G AQTGTGKT +F +P++
Sbjct: 3   SFYEMGL-PLLLAQALDKNSFSVPTPVQAQAIPLALKGKDILGSAQTGTGKTLAFAIPLI 61

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKK 118
             +L +  A       L++ PTRELA QV +   K   KN  L +ALLIGG P   Q  +
Sbjct: 62  AKLLGEPNAST----ALVIVPTRELAQQVTNEIGKLLLKNSVLKIALLIGGEPIFRQLNQ 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+R   ++I TPGRI+DH  R  L+ NN+  LV+DE DRM DMGF   I+ I   +P  R
Sbjct: 118 LQRRPRIVIGTPGRIIDHIERKTLITNNVSTLVLDEVDRMFDMGFGIQIEGIMKYLPKMR 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQ 237
           Q L+FSAT+  ++ K++E +   P+R+ V   ++T+  I+   +  YA  S+K   L+ Q
Sbjct: 178 QNLMFSATLPGDIVKLAEKYSNQPERVSVENEATTSVKIKQEII--YASESEKYGKLVTQ 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L Q + ++   I+F   K+    L + L K   S  AIHG++ QR R +++++F+ G  Q
Sbjct: 236 LYQRKGSI---IVFVRTKQRADQLAYKLRKDNHSALAIHGDLKQRKRKRVINSFRRGHNQ 292

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MVA+D+A+RGLDIP + HV N+D P    NYIHR GRT RAG  G A + +  +D K +
Sbjct: 293 IMVATDVASRGLDIPHIQHVINYDAPESQANYIHRTGRTARAGAEGYALSFITSQDKKRL 352


>gi|319399568|gb|EFV87823.1| DEAD/DEAH box helicase family protein [Staphylococcus epidermidis
           FRI909]
          Length = 509

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 149/384 (38%), Positives = 223/384 (58%), Gaps = 15/384 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S K V  +   G+ +PTPIQ  +IP  L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  G+  V+   +LIL PTRELA QVA+   ++ K   + V  + GG+P E Q K L++
Sbjct: 63  KV-VGQQGVQ---SLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180
           G  +++ TPGR++DH NR  L    I  L++DEAD M++MGFI  ++ I   +P   RQT
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +Q++ + F++ PK I+      +   I+  +  T  +  +K       L 
Sbjct: 179 MLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYY--TIVKELEKFDTFTNFLD 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++V
Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  I
Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E       D  N  + +L PP  K
Sbjct: 356 E-------DVNNRRMKALRPPHRK 372


>gi|197119152|ref|YP_002139579.1| ATP-dependent RNA helicase RhlB [Geobacter bemidjiensis Bem]
 gi|197088512|gb|ACH39783.1| ATP-dependent RNA helicase RhlB [Geobacter bemidjiensis Bem]
          Length = 482

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 146/381 (38%), Positives = 222/381 (58%), Gaps = 9/381 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +  +V   + + G+ + TPIQ K +PL L   DV G AQTGTGKTA+F++ + 
Sbjct: 1   MKFTELQIPAEVQKGIDETGFTQCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIF 60

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           T L  +        PR LIL PTREL  Q+  + +  GK     +  + GG+ +  Q   
Sbjct: 61  TKLLSQAKTGGEHHPRALILAPTRELVVQIEKDAQALGKYTGFNIQAIYGGVDYMKQRDA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176
           L+ GAD++I TPGR++D+  +    + ++E LVIDEADRM DMGFI  ++ I   +P   
Sbjct: 121 LKAGADIVIGTPGRLIDYLKQKVYSVKDVEALVIDEADRMFDMGFIADLRFILRRLPPYD 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT+   + +++  F+  P+++ V     TAE +E   V  +    +K  LL 
Sbjct: 181 KRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPEQMTAERVEQ--VLYHVSRKEKFPLLL 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL+    M+  +IF N K+    L   L    F    I G+++QR RMKIL++FK+GT+
Sbjct: 239 GLLRKMG-MERTMIFVNTKREAEYLQDRLNANEFPGKVISGDVEQRKRMKILADFKDGTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +M+A+D+A+RG+ I  V HV N+D+P   E+Y+HRIGRT RAG  G A +   ++   +
Sbjct: 298 PIMIATDVASRGIHIEGVSHVINYDLPQDCEDYVHRIGRTARAGAEGMAISFADEDGAFY 357

Query: 357 IDAIEKLIEKKV--DWLNGDL 375
           I+ IE  I++K+  +W   D+
Sbjct: 358 IEPIEDFIKQKIPTEWAEDDM 378


>gi|70725957|ref|YP_252871.1| hypothetical protein SH0956 [Staphylococcus haemolyticus JCSC1435]
 gi|123660708|sp|Q4L7W0|Y956_STAHJ RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SH0956
 gi|68446681|dbj|BAE04265.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 503

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 147/384 (38%), Positives = 225/384 (58%), Gaps = 15/384 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S K V  +   G+ +PTPIQ  +IP  L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDKTVETLEAMGFKEPTPIQKDSIPYTLEGKDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  G++ V+    LIL PTRELA QVA+   ++ +  N+ V  + GG+P + Q K L+R
Sbjct: 63  KV-VGQSGVQ---ALILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPIDRQIKALKR 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180
           G  +++ TPGR++DH NR  L  N I  L++DEAD M++MGFI  ++ I   +P   RQT
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +Q + + F+++P+ ++      +   I+  +  T  +  +K       L 
Sbjct: 179 MLFSATMPKAIQTLVQQFMKSPQIVKTMNNEMSDPQIDEYY--TIVKELEKFDTFTNFLD 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++V
Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  I
Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E       D     +++L PP  K
Sbjct: 356 E-------DSNGRRMNALRPPHRK 372


>gi|91773889|ref|YP_566581.1| DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM
           6242]
 gi|9581858|gb|AAF89099.1|AF199442_1 DEAD-box RNA helicase [Methanococcoides burtonii]
 gi|91712904|gb|ABE52831.1| Dead box RNA helicase [Methanococcoides burtonii DSM 6242]
          Length = 522

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 142/353 (40%), Positives = 214/353 (60%), Gaps = 13/353 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+   ++ ++ D  + +PT IQ   IPL+L+  D+ G A TG+GKT +F   ++  
Sbjct: 4   FKKLGIEDAILRSIEDKKFEEPTEIQKMAIPLILEGKDIIGGAATGSGKTLAFGCGIIQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +EKG       R L+L PTRELA QV ++ +++ ++  L VA + GG+    Q ++LER 
Sbjct: 64  IEKGNG----IRALVLTPTRELAEQVQNSLKEFSRHKQLRVAPIYGGVAINPQIRQLER- 118

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADV++ TPGR+LDH  RG + + ++EILV+DEADRMLDMGFI  ++ I    P  RQT++
Sbjct: 119 ADVVVATPGRLLDHIERGTIDLGDVEILVLDEADRMLDMGFIDDVEEIIDECPSDRQTMM 178

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ ++Q +S  ++ NP ++        ++ ++  ++    +   K +LL  LL+S+
Sbjct: 179 FSATVSKDIQYLSSKYMNNPSKV-FAKAYVDSDKLKQVYIDVPKKM--KFSLLVHLLKSE 235

Query: 243 DTMKNGII--FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              K+G++  FCN + NV  +  +L K      AIHG   Q  R   LS F       +V
Sbjct: 236 ---KSGLVMVFCNTRSNVDFVQKNLRKNDIDAIAIHGGHTQAKRKSTLSKFHSSNAHALV 292

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            +D+AARGLDIP V HV+NFD+P+    Y+HRIGRT RAGR GK   +VA  D
Sbjct: 293 CTDVAARGLDIPHVSHVYNFDIPDDPSEYVHRIGRTARAGREGKVINVVADVD 345


>gi|66047524|ref|YP_237365.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
 gi|63258231|gb|AAY39327.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
          Length = 442

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 146/371 (39%), Positives = 218/371 (58%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               +E  +      R L+L PTRELA QV ++  +Y ++  LT     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG DVL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRRGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A +++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++        ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVD 369
           AIE L  + ++
Sbjct: 358 AIEVLTRQTLE 368


>gi|295086065|emb|CBK67588.1| Superfamily II DNA and RNA helicases [Bacteroides xylanisolvens
           XB1A]
          Length = 641

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 140/367 (38%), Positives = 226/367 (61%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP+L 
Sbjct: 4   FEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            ++    + R+P++LIL PTREL  Q+A +   Y K  + L V  + GG   ++Q + L+
Sbjct: 64  QID---VKNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  + ++ I  +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILADVPQERNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+ ++S+N+L+N K I +   + +   ++H  V    Q   K   L++++ 
Sbjct: 181 LLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKH--VVYTVQAKDKYEALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+V
Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357

Query: 361 EKLIEKK 367
           E++I KK
Sbjct: 358 ERIISKK 364


>gi|237799048|ref|ZP_04587509.1| helicase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021902|gb|EGI01959.1| helicase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 332

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 134/331 (40%), Positives = 210/331 (63%), Gaps = 7/331 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPSK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++PK +++ T + T   IE   +  +A   +K + +  LL+ 
Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 243 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           +D+AARGLD+P + HVFN D+P   E+Y+HR
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHR 332


>gi|228968588|ref|ZP_04129573.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791080|gb|EEM38697.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 481

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 224/364 (61%), Gaps = 10/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ--LLQ 240
           FSAT+ ++++K+S  ++ +P  IE+     T + IEH      A   +K +LL+   +++
Sbjct: 183 FSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFE--AIEDEKFSLLKDVTMIE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D+    IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +V
Sbjct: 241 NPDSC---IIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ I
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEI 357

Query: 361 EKLI 364
           E  I
Sbjct: 358 EDYI 361


>gi|330938172|gb|EGH41869.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 442

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 146/371 (39%), Positives = 218/371 (58%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               +E  +      R L+L PTRELA QV ++  +Y ++  LT     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG DVL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRRGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A +++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++        ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGMNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVD 369
           AIE L  + ++
Sbjct: 358 AIEVLTRQTLE 368


>gi|302184790|ref|ZP_07261463.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           syringae 642]
          Length = 442

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 146/371 (39%), Positives = 218/371 (58%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               +E  +      R L+L PTRELA QV ++  +Y ++  LT     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG DVL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRRGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A +++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAAASVKQWVVTV--DKKRKADLFIHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++        ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVD 369
           AIE L  + ++
Sbjct: 358 AIEVLTRQTLE 368


>gi|77918349|ref|YP_356164.1| DEAD helicase family protein [Pelobacter carbinolicus DSM 2380]
 gi|77544432|gb|ABA87994.1| DEAD helicase family protein [Pelobacter carbinolicus DSM 2380]
          Length = 433

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 143/371 (38%), Positives = 221/371 (59%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L  +V   +   G+   TP+Q ++IPL L + DV   AQTGTGKTA+F++ + 
Sbjct: 1   MKFTELNLPAEVQRGIDAMGFTALTPVQEQSIPLALDKKDVAAQAQTGTGKTAAFLISLF 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++   +   R PR LIL PTREL  Q++ +    G+     +  + GG+ +E Q + L
Sbjct: 61  ARLMSDKKTETRAPRALILAPTRELVVQISKDAMGLGQFCGFKIQPIFGGVDYEKQRQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177
             G D+LI TPGR++D+  +G + + +IE LVIDEADRM DMGFI  ++ I   +P    
Sbjct: 121 HAGVDILIATPGRLIDYVKQGAVSLGSIEALVIDEADRMFDMGFIRDLRYILRKLPAFDR 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT++  + +++  F+   ++I+V   + TAE IE   V  +    +K ALL  
Sbjct: 181 RQTMLFSATLSHRVMELAYEFMDLAEKIKVAPENVTAEQIEE--VLYHVSRREKFALLLG 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ ++  K  ++F N K+   +L   L+  GF    I G+I Q+ RM+IL  FKEG I 
Sbjct: 239 LLK-KEPAKCVMLFVNTKREAEHLTGRLQVNGFKAALISGDIPQKKRMRILDEFKEGRIH 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +V +D+A+RG+ +  V HV N+D+P   E+Y+HRIGRT RAG  GKA +   ++ + ++
Sbjct: 298 FLVGTDVASRGIHVDGVTHVINYDLPQDREDYVHRIGRTARAGAAGKAISFADEDLVYYL 357

Query: 358 DAIEKLIEKKV 368
             IE  I  ++
Sbjct: 358 ADIEDYIGHRI 368


>gi|70732712|ref|YP_262475.1| DEAD-box ATP dependent DNA helicase [Pseudomonas fluorescens Pf-5]
 gi|68347011|gb|AAY94617.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           fluorescens Pf-5]
          Length = 444

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 153/368 (41%), Positives = 222/368 (60%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLGGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L  E  +      R LIL PTRELA QV ++  +Y ++  L    + GG+    Q  K
Sbjct: 61  QLLTLEGPKVDSNSVRALILVPTRELAEQVHESVRQYAEHLPLRTYAVYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD F +  +  + ++ LV+DEADRMLD+GF   +++I + +P  R
Sbjct: 121 LRKGVDLLVATPGRLLDLFRQNAVKFSQLQTLVLDEADRMLDLGFSEELKSIYAALPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D +++++   L +P  IEV+  +  A T++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDAIRQLAGQMLNDPLSIEVSPRNVAANTVKQWVVPV--DKKRKPELFSHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ ++  K  ++F   +  V  L   L+ QG +   IHG+  Q +R + L  FK   IQ+
Sbjct: 239 LR-KNRWKQVLVFAKTRNGVDALVEKLQGQGVNADGIHGDKPQATRQRALDRFKASEIQI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V NFD+P  AE+YIHRIGRTGRAG  G+A +LV  +++  + 
Sbjct: 298 LVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADEVNLLS 357

Query: 359 AIEKLIEK 366
           AIE L  +
Sbjct: 358 AIEMLTRQ 365


>gi|296447148|ref|ZP_06889079.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
 gi|296255313|gb|EFH02409.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
          Length = 447

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 142/333 (42%), Positives = 206/333 (61%), Gaps = 5/333 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  ++ A+   GYV PTPIQ + IP +L+  D+ GIAQTGTGKTA+F LP+L  
Sbjct: 4   FADLGLAEVILRALAQEGYVAPTPIQAQAIPSLLEGRDLLGIAQTGTGKTAAFALPILHR 63

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L  E+ R   +  R L+L PTRELAAQ+AD+F  YG+   ++V +++GG+    Q K L 
Sbjct: 64  LLDERRRPAPQTARALVLAPTRELAAQIADSFRSYGRFARMSVGVIVGGVGHGPQIKMLA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVL+ TPGR+LDH   G L ++    +V+DEAD MLD+GF+  I+ I S +P  RQ+
Sbjct: 124 SGVDVLVATPGRLLDHIASGALRLDTTRTIVLDEADHMLDLGFLAPIRKIVSRLPKQRQS 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+  ++ + L NP  ++V   ++TAE ++   V      +K+  L++  L 
Sbjct: 184 LFFSATMPKEIAALAADMLNNPVSVQVTPTATTAERVDQ-RVLLVDGAAKRDVLVE--LF 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   +   I+F   K+    +   LE  G    AIHGN  Q  RM+ L +F+ G  + +V
Sbjct: 241 ADPALACAIVFTRTKRGADRVSQHLEAHGVGSAAIHGNKSQSQRMRALDDFRRGRTRALV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
           A+D+AARG+D+  V HV NF++P   E Y+HRI
Sbjct: 301 ATDIAARGIDVDGVTHVVNFELPETPEAYVHRI 333


>gi|220927762|ref|YP_002504671.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
 gi|219998090|gb|ACL74691.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
           H10]
          Length = 542

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 143/362 (39%), Positives = 213/362 (58%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG+S  ++ A+ D G+  PT +Q K IP +L   D+  +++TG+GKTA F + +L +
Sbjct: 5   FNELGISAPILKAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVSILQL 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                A    P+ LIL P RELA QV ++  K  K        + G      + + L +G
Sbjct: 65  TNPEEA---GPQGLILTPARELAVQVDNDIRKMAKYLKHKTTAIYGQHNINLETQILNKG 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ DH + G L   NI  LV+DEADRMLDMGF+  +  I   +P  R TLL
Sbjct: 122 VSIVTGTPGRVFDHISHGTLSTKNIRFLVLDEADRMLDMGFLDQVVRIVKTLPKERITLL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+  + + ++ NP  IE+ + + T +TI   +      Y++K   L +LL  +
Sbjct: 182 FSATMPPEIHNICKRYMNNPVTIEIESQTKTVDTIHQVYY--RVNYNEKNTQLNRLLIVE 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              ++ +IFCN K  V  +   L K+G+S  A+HG+I Q  R+  +  FK+G   ++VA+
Sbjct: 240 KP-ESCMIFCNTKAAVDRVQSFLGKKGYSSRALHGDIPQSKRLNTIQQFKQGKFHILVAT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+ I D+  V N+DVPN  +NY+HRIGRTGRAG  G+AF+LV  +DI  +  IE+
Sbjct: 299 DVAARGIHIEDLSLVINYDVPNDKDNYVHRIGRTGRAGHEGRAFSLVTGDDIISLYEIEE 358

Query: 363 LI 364
            I
Sbjct: 359 HI 360


>gi|238019582|ref|ZP_04600008.1| hypothetical protein VEIDISOL_01451 [Veillonella dispar ATCC 17748]
 gi|237864281|gb|EEP65571.1| hypothetical protein VEIDISOL_01451 [Veillonella dispar ATCC 17748]
          Length = 432

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 141/363 (38%), Positives = 221/363 (60%), Gaps = 6/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+  +++ A+   G  +PTPIQ + IP+V + +DV   AQTGTGKT +F+LP   I
Sbjct: 4   FKSLGVCDELIQALQKQGIKEPTPIQEQAIPVVFKGNDVIAKAQTGTGKTLAFLLP---I 60

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++    V   + LI+ PTREL  Q++D  ++ G   N+ +  LIGG   EAQ ++L R 
Sbjct: 61  LQRVHTDVHQEQVLIIAPTRELVKQISDEAKEIGSILNVDILPLIGGKTIEAQLQQLGRR 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+LDH  RG L ++ I  +V+DEAD+ML MGF+P I+N+ S     RQ LL
Sbjct: 121 PQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLISQTDANRQLLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ D+++ +++ ++  P  +       T E+I+        +  +K   L ++++ +
Sbjct: 181 FSATIPDKIRNLAKAYMSKPASVTAEGKHVTLESIDQRVYMMNTE--EKTQRLIKMIE-E 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D     I+FCN+++  V L + L   G ++  +HG++ Q  R +IL +F +   Q++VA+
Sbjct: 238 DNPFLAIVFCNKREGAVRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HV+N+DVP   + YIHRIGRTGRAG  G A T    +D   +  IE+
Sbjct: 298 DIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGVAVTFATPQDESWLRRIER 357

Query: 363 LIE 365
            I+
Sbjct: 358 AIQ 360


>gi|89094261|ref|ZP_01167203.1| DEAD/DEAH box helicase-like [Oceanospirillum sp. MED92]
 gi|89081516|gb|EAR60746.1| DEAD/DEAH box helicase-like [Oceanospirillum sp. MED92]
          Length = 592

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 144/374 (38%), Positives = 231/374 (61%), Gaps = 11/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+LG++  V+  + + GY  P+PIQ  +IP +L+  D+ GIAQTGTGKTA+F LP+L
Sbjct: 7   LSFAELGIAEPVLKVLDEIGYETPSPIQAASIPHLLEGRDLLGIAQTGTGKTAAFSLPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           + L     + R  + LIL PTRELA QVA+  + Y +N  +  V  + GG  +++Q ++L
Sbjct: 67  SRLN---LKSRNTQLLILAPTRELAIQVAEACQTYARNLPDFHVLPIYGGQAYDSQLRQL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA V++ TPGR++DH  RG L ++ ++ LV+DEAD ML MGFI  +  +    P  RQ
Sbjct: 124 KRGAQVVVGTPGRVMDHMRRGSLKLDKLQALVLDEADEMLRMGFIDDVNWVLEHTPEDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  +++ V+E  L +P  + +   ++TA TI   ++      ++K   + ++L
Sbjct: 184 IALFSATMPAQIKSVAEAHLNDPAEVRIKAKTATATTITQKYLRVSG--NQKLDAVTRIL 241

Query: 240 QSQ--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + Q  D M   ++F   K   V L   L  +G++  A++G+I Q  R + +   K G I 
Sbjct: 242 EMQAFDAM---LVFVRTKSATVELAEKLSARGYACEALNGDISQNLRERTIDKLKRGQID 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+ ARGLD+  + HV N+D+P   E+YIHRIGRTGRAGR G+A   V+  + + +
Sbjct: 299 ILIATDVVARGLDVERISHVLNYDIPYDTESYIHRIGRTGRAGREGEAILFVSPREQRML 358

Query: 358 DAIEKLIEKKVDWL 371
            +IE+   +K++ +
Sbjct: 359 KSIERATRQKIESM 372


>gi|134046209|ref|YP_001097694.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           maripaludis C5]
 gi|132663834|gb|ABO35480.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
           C5]
          Length = 541

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 138/367 (37%), Positives = 224/367 (61%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F +LGLS +++ A+   G+  PTPIQ + IP++++ + D+ G AQTGTGKTA+F +P+L 
Sbjct: 4   FKNLGLSDEILEALEKKGFTTPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPILE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++     R  + LIL PTRELA QVA+  +    +  L V  + GG   + Q ++L R
Sbjct: 64  TIDESS---RNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIRELRR 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGRILDH +R  + + N+  +V+DEAD ML+MGFI  ++ I   V   ++ L
Sbjct: 121 GVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTEKRML 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ D + K+++N+++    I+V     T    +  F   +++   K  LL +++  
Sbjct: 181 LFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSR--DKFELLSRIIDL 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +     G+IFC  K +V  +   L ++G++   +HG++ Q  R K L  FK   I ++VA
Sbjct: 239 EKEF-YGLIFCKTKADVDEVSSRLNEKGYAAEGLHGDMTQAQREKTLDKFKGRKINVLVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI D+ HV N+D+P   E+Y+HRIGRTGRAG+ G A T V   + +    I+
Sbjct: 298 TDVAARGIDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKFKYIQ 357

Query: 362 KLIEKKV 368
           K+ + ++
Sbjct: 358 KIAKTEI 364


>gi|330504745|ref|YP_004381614.1| ATP-dependent RNA helicase RhlB [Pseudomonas mendocina NK-01]
 gi|328919031|gb|AEB59862.1| ATP-dependent RNA helicase RhlB [Pseudomonas mendocina NK-01]
          Length = 482

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 143/374 (38%), Positives = 226/374 (60%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++T 
Sbjct: 96  FHDFKLAPELMHAIHDLGFPYCTPIQAGVLGYTLKGQDAIGRAQTGTGKTAAFLISIITQ 155

Query: 62  ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L+    + R    PR LI+ PTREL  Q+A +  +  K   L V   +GG+ F+ Q K+
Sbjct: 156 LLQTPAPKERYMGEPRALIIAPTRELVVQIAKDAAELTKYTKLNVMSFVGGMDFDKQLKQ 215

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 216 LESRFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPMK 275

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCAL 234
             RQTLLFSAT TD++  +++ +  NP  +E+   +  ++T+E H +    A    K  L
Sbjct: 276 GDRQTLLFSATFTDDVMNLAKQWTVNPAIVEIEPENVASDTVEQHVYAVASAD---KYKL 332

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L+ +Q+     ++F N+K  V  +   L + G S   + G++ Q  R+K+L  F+ G
Sbjct: 333 LYNLV-TQNAWDRVMVFANRKDEVRRIEERLTRDGVSAAQMSGDVPQHKRIKVLEGFRAG 391

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+A RG+ +  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D 
Sbjct: 392 HIRVLVATDVAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGTSISFAGEDDA 451

Query: 355 KHIDAIEKLIEKKV 368
             +  IE LI +K+
Sbjct: 452 FALPPIEALIGRKI 465


>gi|330836276|ref|YP_004410917.1| DEAD/DEAH box helicase domain-containing protein [Spirochaeta
           coccoides DSM 17374]
 gi|329748179|gb|AEC01535.1| DEAD/DEAH box helicase domain protein [Spirochaeta coccoides DSM
           17374]
          Length = 634

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 140/369 (37%), Positives = 221/369 (59%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           FADLGLS + +  +   G+ +PT IQ + IPL+L ++ DV G A+TGTGKTA+F +P+L 
Sbjct: 7   FADLGLSARTLDVLKKKGFEEPTQIQKECIPLLLHEKTDVIGQARTGTGKTAAFGIPILE 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++  + V+    LIL PTRELA QVAD       +  L++A + GG     Q ++L R
Sbjct: 67  TVDEHDSTVQ---ALILAPTRELAVQVADEISSMRPSSGLSIAAIYGGASMSLQLRQLHR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ DH +RG L + N++ +V+DEAD MLDMGFI  I+NI S  P  ++ L
Sbjct: 124 GVQIVVGTPGRVQDHLDRGTLNLENLKFMVLDEADEMLDMGFIEDIENILSRTPADKRML 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   +Q +++ F+++PK + V      ++ + +          ++   L+ L + 
Sbjct: 184 CFSATMPAPIQNLAQRFMKDPKIVRV-----VSQDMTNLLTNQVCYEVRESDKLEALCRV 238

Query: 242 QDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            D   +  G++FC  K     +   L  +G    A+HG++ Q+ R  IL+ F+   + ++
Sbjct: 239 IDVAVDFYGLVFCRTKLQCDEVTEKLVARGQDADALHGDLSQKQREAILNRFRRRQLSVL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIPD+ HV N+ +P   E YIHRIGRTGRAGR G A T +   +   +  
Sbjct: 299 VATDVAARGIDIPDLTHVINYSIPQNPEAYIHRIGRTGRAGRSGTAVTFITPREYSKLKY 358

Query: 360 IEKLIEKKV 368
           I+++   ++
Sbjct: 359 IQRIAHTEI 367


>gi|229014620|ref|ZP_04171734.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides DSM 2048]
 gi|228746631|gb|EEL96520.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides DSM 2048]
          Length = 464

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 135/362 (37%), Positives = 222/362 (61%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS ++V A+   GY  PT +Q + IP+ LQR D+   +QTG+GKTASF +P+  +
Sbjct: 6   FTDYALSKEIVRALTGLGYEHPTEVQGEVIPVALQRKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +++K+S  ++ +P  IE+     T + IEH       +  +K +LL+ +   +
Sbjct: 183 FSATLPKDVEKLSRTYMDSPTHIEIKATGITTDKIEHILFEMREE--EKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVFQQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG +GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIEE 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|294498466|ref|YP_003562166.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
 gi|294348403|gb|ADE68732.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
          Length = 466

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 148/393 (37%), Positives = 224/393 (56%), Gaps = 17/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS  +  AV + G+ + TPIQ + IP+ +   D+ G AQTGTGKT +F +P++  
Sbjct: 4   FSDFNLSKDIEKAVHNLGFEEATPIQAEAIPIAMAGKDLIGQAQTGTGKTTAFGIPLIER 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E G   ++    ++L PTRELA QVA+   + G+   +    + GG     Q K L+  
Sbjct: 64  VELGEEGIQ---GIVLAPTRELAIQVAEELNRIGQVKGVKTLPIYGGQDINRQIKALKNR 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ DH  R  + +N+I   V+DEAD ML+MGFI  IQ+I   +    QTLL
Sbjct: 121 PHIISATPGRLKDHMKRRTIRLNHIRTAVLDEADEMLNMGFIEDIQSILGGISSPHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLLQ 240
           FSATM+ ++Q +++ F+ +P+ ++V     T + IE  +  +    ++   C L+   LQ
Sbjct: 181 FSATMSKQVQSLAQKFMNDPELVKVKAKELTVKNIEQQYMEIPENRKFDVLCNLVD--LQ 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D     I+F   KK V  L   L+K+G++   IHG++ Q  R  ++  FK  TI++MV
Sbjct: 239 VPDL---AIVFGRTKKRVDELAEGLKKRGYAAEGIHGDLTQSKRADVIRQFKNHTIEIMV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG  G A T +   +  H+  I
Sbjct: 296 ATDVAARGLDITGVSHVYNFDIPQDPESYVHRIGRTGRAGTKGLAVTFITPRERNHLKVI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           E + + K       +S  +PP     +A H  A
Sbjct: 356 EDVTKTK-------MSRQSPPTSSEVMAGHQEA 381


>gi|153953072|ref|YP_001393837.1| ATP-dependent RNA helicase [Clostridium kluyveri DSM 555]
 gi|219853723|ref|YP_002470845.1| hypothetical protein CKR_0380 [Clostridium kluyveri NBRC 12016]
 gi|146345953|gb|EDK32489.1| Predicted ATP-dependent RNA helicase [Clostridium kluyveri DSM 555]
 gi|219567447|dbj|BAH05431.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 481

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 148/412 (35%), Positives = 235/412 (57%), Gaps = 16/412 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  LS  ++ ++   GY  P+ +Q K IPL+L+  D+   +QTG+GKTA+F +P  
Sbjct: 4   LNFKDFQLSNTILESLQKLGYNSPSEVQEKVIPLILKNKDIIVKSQTGSGKTAAFAIP-- 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I EK     + P+ L+L PTRELA Q+ ++F   G+   +    + G  P   Q KKL+
Sbjct: 62  -ICEKIEIEEKNPQALVLTPTRELALQIKEDFSYIGRLKKINCTAVFGKEPISLQIKKLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V+  TPGRILDH  R  L++  I+ LVIDEAD ML  GF+  ++++   +P  R T
Sbjct: 121 QRVHVVTGTPGRILDHIERNTLVLEKIKYLVIDEADEMLSRGFMEQVESVIGSLPKNRTT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ DE+ K+   +++NP  IEV   SS  + I   +    A Y  K +LL +++ 
Sbjct: 181 LLFSATIPDEILKLCNVYMENPLNIEVQCESSVKDRITQMYYKIEAPY--KFSLLNKIIY 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC  KKNV +L   ++ + +S  A+HG + Q  R+  + +FK G    ++
Sbjct: 239 TERP-DSSMIFCRTKKNVDDLVLQMKARKYSCEALHGGMLQNERIDKIESFKRGEFTFLI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+D+ ++ H+ N+D+P   ENYIHRIGRTGR   +G A T V  ++  ++  I
Sbjct: 298 CTDIAARGIDVENITHIINYDIPMERENYIHRIGRTGRFTSNGTAITFVTPKEYLYLKKI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ----KSTGFDR 408
           E+     +    G +    P LE+++  +     K    P+    KST F+R
Sbjct: 358 EEYFH--ITIKEGSI----PSLEEVETGKKLFYEKLKSAPKRKEDKSTKFNR 403


>gi|160880145|ref|YP_001559113.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160428811|gb|ABX42374.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
           ISDg]
          Length = 483

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 219/363 (60%), Gaps = 10/363 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L  +++ A+    Y++PTPIQ K IPL L+  D+   ++TG+GKTA+F +P   I
Sbjct: 6   FTQYKLCEEIIQALSMLHYIEPTPIQEKVIPLALEGKDIIAKSKTGSGKTAAFAIP---I 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E       +P+ L+LEPTRELA QV D     G+   + V ++ GG PF+ Q   L++ 
Sbjct: 63  CESIVWEENLPQALVLEPTRELAYQVKDEIFNVGRMKRVKVPVVFGGFPFDKQALTLKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGR+LDH   G L  +N++ ++IDEAD MLDMGF+  ++ I S +P     +L
Sbjct: 123 SHIVVGTPGRVLDHCETGTLKCSNVKYVIIDEADLMLDMGFLDDVKRILSYLPENITIML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQLLQ 240
           FSATM + L  +++ F+ +P  +++   + T ++IE   CFV    +Y      L+ L +
Sbjct: 183 FSATMGEALYALTDEFMNSPVEVKLEDGTETVDSIEQLGCFVTEEDKYE---LFLRMLYK 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  T  N +IFC  ++ V  L + L+K+      +HG IDQ+ R+  + +F+ G  + ++
Sbjct: 240 NNPT--NAMIFCGTREMVEVLYYKLKKEKVWCGMLHGLIDQKQRIHTIDDFRTGGFRYLI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D  D+ HV N+D+P   E Y+HRIGRTGR G+ GKA + + +E+ K +  I
Sbjct: 298 ATDVAARGVDFDDITHVINYDLPMSKETYVHRIGRTGRNGKSGKAISFIREEEKKMLSLI 357

Query: 361 EKL 363
           EK 
Sbjct: 358 EKF 360


>gi|229017793|ref|ZP_04174677.1| ATP-dependent RNA helicase [Bacillus cereus AH1273]
 gi|229024016|ref|ZP_04180493.1| ATP-dependent RNA helicase [Bacillus cereus AH1272]
 gi|228737285|gb|EEL87803.1| ATP-dependent RNA helicase [Bacillus cereus AH1272]
 gi|228743484|gb|EEL93600.1| ATP-dependent RNA helicase [Bacillus cereus AH1273]
          Length = 450

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 152/423 (35%), Positives = 242/423 (57%), Gaps = 28/423 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 66  KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPASKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ-------HNHARKNNPIPQKSTGFDRRKKNY 413
           EK              +L  P+++  I Q        N      P P+KS  + +R    
Sbjct: 360 EK--------------TLGAPIQRQIIEQPMIKNVDENGKPVQKPAPKKSGQYRQRDSRE 405

Query: 414 SSQ 416
            S+
Sbjct: 406 GSR 408


>gi|253700068|ref|YP_003021257.1| DEAD/DEAH box helicase [Geobacter sp. M21]
 gi|251774918|gb|ACT17499.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
          Length = 490

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 146/381 (38%), Positives = 222/381 (58%), Gaps = 9/381 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +  +V   + + G+ + TPIQ K +PL L   DV G AQTGTGKTA+F++ + 
Sbjct: 1   MKFTELKIPAEVQKGIDETGFTQCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIF 60

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           T L  +        PR LIL PTREL  Q+  + +  GK     +  + GG+ +  Q   
Sbjct: 61  TKLLSQAKTGGEHHPRALILAPTRELVVQIEKDAQALGKYTGFNIQAIYGGVDYMKQRDA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176
           L+ GAD++I TPGR++D+  +    + ++E LVIDEADRM DMGFI  ++ I   +P   
Sbjct: 121 LKAGADIVIGTPGRLIDYLKQKVYSVKDVEALVIDEADRMFDMGFIADLRFILRRLPPYD 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT+   + +++  F+  P+++ V     TAE +E   V  +    +K  LL 
Sbjct: 181 KRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPEQMTAERVEQ--VLYHVSRKEKFPLLL 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL+    M+  +IF N K+    L   L    F    I G+++QR RMKIL++FK+GT+
Sbjct: 239 GLLRKMG-MERTMIFVNTKREAEYLQDRLNANEFPGKVISGDVEQRKRMKILADFKDGTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +M+A+D+A+RG+ I  V HV N+D+P   E+Y+HRIGRT RAG  G A +   ++   +
Sbjct: 298 PIMIATDVASRGIHIEGVSHVINYDLPQDCEDYVHRIGRTARAGAEGMAISFADEDGAFY 357

Query: 357 IDAIEKLIEKKV--DWLNGDL 375
           I+ IE  I++K+  +W   D+
Sbjct: 358 IEPIEDFIKQKIPTEWAEDDM 378


>gi|313675031|ref|YP_004053027.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312941729|gb|ADR20919.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 590

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 225/368 (61%), Gaps = 8/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59
           + F +LGL P+++ A+L+ G+V+PT IQ KTIP +L  + D+  +AQTG+GKTA+F LP+
Sbjct: 2   LTFEELGLKPEILKAILEIGFVEPTAIQQKTIPHLLNTKQDLIALAQTGSGKTAAFGLPV 61

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKK 118
           +  ++    + +   +L+L PTRELA Q+A++F  Y K +  L V  + GG   E Q K 
Sbjct: 62  INQIDSDSKKTQ---SLVLCPTRELAIQIANDFNSYTKYSKKLDVVPVYGGASIETQIKA 118

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G  +++ TPGR++D   R KL + +IE +V+DEAD ML+MGF   +  I S  P  R
Sbjct: 119 LNKGVQIVVGTPGRVVDLIKRKKLKLEDIEWVVLDEADEMLNMGFKDDLDFILSHTPDQR 178

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM+ E+ ++S N++  P+ I     +  A+ +EH +     +  K  AL +  
Sbjct: 179 QTLLFSATMSKEVLRISNNYMNKPEEISSGKRNQGADKVEHFYFVVNGR-DKYLALKRIA 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             + D     IIFC  K+    +   L   G++   +HG++ Q  R  ++  +++  +Q+
Sbjct: 238 DINPDIY--AIIFCRTKRETQEISDQLMADGYNADCLHGDLSQAQRDAVMGRYRKKNLQM 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ ++ HV N+++P+  E Y HR GRTGRAG+ G +  ++   DI  I 
Sbjct: 296 LVATDVAARGLDVNEITHVINYNIPDDLETYTHRSGRTGRAGKAGISMAIIGPRDINKIK 355

Query: 359 AIEKLIEK 366
            +E+++ K
Sbjct: 356 QLERILGK 363


>gi|229136279|ref|ZP_04265026.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST196]
 gi|228647151|gb|EEL03239.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST196]
          Length = 481

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 134/362 (37%), Positives = 223/362 (61%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FTDYALSKEIVRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L ++ ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLDCLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +++K+S  ++ +P  IE+     T + IEH       +  +K +LL+ +   +
Sbjct: 183 FSATLPKDVEKLSRTYMDSPTHIEIKATGITTDKIEHTLFEMREE--EKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVFQQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG +GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIEE 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|228911292|ref|ZP_04075096.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis IBL 200]
 gi|228848310|gb|EEM93160.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis IBL 200]
          Length = 481

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 135/364 (37%), Positives = 225/364 (61%), Gaps = 10/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ--LLQ 240
           FSAT+ ++++K+S  ++ +P  IE+     T + IEH       +  +K +LL+   +++
Sbjct: 183 FSATLPEDVEKLSRTYMNSPIHIEIKAAGITTDKIEHTLFEVTEE--EKLSLLKDVTIIE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D+    IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +V
Sbjct: 241 NPDSC---IIFCRTQENVDHVYRQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ I
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEI 357

Query: 361 EKLI 364
           E+ I
Sbjct: 358 EEYI 361


>gi|71277821|ref|YP_268464.1| RNA helicase DeaD [Colwellia psychrerythraea 34H]
 gi|71143561|gb|AAZ24034.1| RNA helicase DeaD [Colwellia psychrerythraea 34H]
          Length = 611

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 151/379 (39%), Positives = 224/379 (59%), Gaps = 13/379 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   ++ AVL  G+   T IQ  TIP +L   DV G AQTGTGKTA+F LP L  
Sbjct: 17  FASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPALAK 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++     ++ P+ ++L PTRELA QVA+  E +GK+   L VA L GG  +  Q ++LER
Sbjct: 77  IDTS---IKKPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLER 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  R  L ++ + + V+DEAD ML+MGF+  IQ I   +P T Q  
Sbjct: 134 GAQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMC 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL--LQQLL 239
           LFSATM   ++K++  FL++P+ I+V         I   +    +  +K  AL  + +++
Sbjct: 194 LFSATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQ-YAWKVSGITKMTALERIAEVV 252

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   IIF   + + V++   LE+ G+   A++G+++Q  R + +   K G   ++
Sbjct: 253 E-YDAM---IIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSIL 308

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLDIP +  V N+D+P   E Y+HRIGRTGRAGR G +   V   ++  I  
Sbjct: 309 VATDVVARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRPREMYSIRH 368

Query: 360 IEKLIEKKVDWLNGDLSSL 378
            E+L    V  LN DL ++
Sbjct: 369 YERLTNGTV--LNYDLPNI 385


>gi|148643558|ref|YP_001274071.1| helicase [Methanobrevibacter smithii ATCC 35061]
 gi|222444945|ref|ZP_03607460.1| hypothetical protein METSMIALI_00561 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350482|ref|ZP_05975899.1| ATP-dependent RNA helicase DeaD [Methanobrevibacter smithii DSM
           2374]
 gi|148552575|gb|ABQ87703.1| helicase [Methanobrevibacter smithii ATCC 35061]
 gi|222434510|gb|EEE41675.1| hypothetical protein METSMIALI_00561 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861264|gb|EFC93562.1| ATP-dependent RNA helicase DeaD [Methanobrevibacter smithii DSM
           2374]
          Length = 429

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 146/367 (39%), Positives = 223/367 (60%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +  ++  ++ + G+ +P+PIQ  TIP  L+  D+ G AQTGTGKT +F +P+L  
Sbjct: 6   FDDFEILAEIKKSIKEMGFEEPSPIQELTIPEALKGIDIIGQAQTGTGKTLAFTVPLL-- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
            +K       P+ ++L PTREL  QVA    K G +   L +  + GG P   Q + L +
Sbjct: 64  -QKIFIPDNSPQAIVLCPTRELCIQVAGEIGKIGSHMKKLKILPVYGGQPIGRQIRVLNK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+I TPGR+LDH  R  L +  I  +V+DEAD MLDMGF   I+ I    P  RQTL
Sbjct: 123 GVHVVIGTPGRVLDHIERKTLDLKGISTVVLDEADEMLDMGFREDIEKILRHTPKQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++++ + + PK ++V     T   I   +  T  +   K   L +L+  
Sbjct: 183 LFSATMPKEIKRITKFYQKKPKHLKVAQSQMTVPEITQYYFET--KEKDKLENLTRLIDV 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D +  G++FCN KK V  +  +L  +G++   IHG+++Q+SR K+++ F+ G I++++A
Sbjct: 241 YD-VNLGLVFCNTKKRVDWVAKNLRNRGYAAEGIHGDMNQKSRDKVMNKFRNGNIEILIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+P+V  V N+DVP   E Y+HRIGRTGRAG  G AFT VA ++I  +  I+
Sbjct: 300 TDVAARGIDVPNVEVVVNYDVPQNPEYYVHRIGRTGRAGNMGYAFTFVAGKEIYSLRTIK 359

Query: 362 KLIEKKV 368
           K+ + K+
Sbjct: 360 KVTKSKI 366


>gi|332885949|gb|EGK06193.1| hypothetical protein HMPREF9456_00067 [Dysgonomonas mossii DSM
           22836]
          Length = 608

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 140/369 (37%), Positives = 227/369 (61%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG++  +  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP   
Sbjct: 4   FEELGVAANIRKAIEEMGYENPMPVQEEVIPYLLGETNDVIALAQTGTGKTAAFGLP--- 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           IL+K   +  +P+ LIL PTREL  Q+A +   Y K   NL V  + GG   E+Q K L+
Sbjct: 61  ILQKIDIKQNVPQALILCPTRELCLQIAGDLSDYSKYIDNLRVLPVYGGSSIESQIKSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++D  NR  + ++N++ +V+DE+D ML+MGF+  I  I S VP  R  
Sbjct: 121 RGVQIIVATPGRLIDLINRRTVELSNVKYVVLDESDEMLNMGFMESIDEILSKVPDERLM 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+ K+++ ++QNPK I +   +  + +++H +   +A+   K   L+++  
Sbjct: 181 LLFSATMPKEIAKITKKYMQNPKEITIGRKNEGSNSVKHVYYLVHAK--DKYLALKRIAD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  ++    +   L + G++  ++HG++ Q  R  ++  F+   IQL+V
Sbjct: 239 YYPNI-YGIIFCRTRRETQEIADKLIQDGYNADSLHGDLSQAQRDYVMQKFRIKNIQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+ +P+  E+Y HR GRTGRAG+ G +  ++  ++   +  I
Sbjct: 298 ATDVAARGLDVDSLTHVINYGLPDDIESYTHRSGRTGRAGKTGTSIAIIHVKEKGKVREI 357

Query: 361 EKLIEKKVD 369
           EK+I KK +
Sbjct: 358 EKIINKKFE 366


>gi|269104240|ref|ZP_06156936.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268160880|gb|EEZ39377.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 431

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 147/371 (39%), Positives = 218/371 (58%), Gaps = 18/371 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L   ++  V ++GY +PTPIQ + IP VL   DV   A TG GKTA+F LP+L  
Sbjct: 10  FTELALIQPLLARVTESGYQQPTPIQGQVIPNVLAGRDVIAGANTGAGKTAAFALPILQE 69

Query: 63  L--------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPF 112
           L          GR R      L+L PTRELA QVAD+   Y  ++N  +  A + GG+  
Sbjct: 70  LYSQKQSDQTHGR-RGNFVSALVLVPTRELARQVADSITSYSAHFNGAIKTAAVYGGVST 128

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
            AQ  +L  GAD+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   + N+ +
Sbjct: 129 NAQMLELRHGADILVATPGRLLDLVDHNAIKLDRVKTLVLDEADRMLSLGFTEELTNVLN 188

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKK 231
            +P  +QTLLFSAT  +++Q ++++ L NP  +E+   S  A TIE H +     +   K
Sbjct: 189 QLPKQKQTLLFSATFPEQVQSLTQDLLNNP--VEIQIQSDDASTIEQHVYTVNKGE---K 243

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
            A+L  L++ Q+  +  ++F   K +  +L   L K+G      HG+  Q SR +I+ +F
Sbjct: 244 TAVLAHLIK-QNQWRQALVFVAAKNSCKHLAEKLHKRGIEAEVFHGDKAQSSRTRIIEDF 302

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G I++++A+D+AARGLDI  +  V N D+P    +Y+HRIGR+GRAG  G A +L+  
Sbjct: 303 KSGKIEVLIATDIAARGLDIEKLPVVINVDLPRSPSDYMHRIGRSGRAGEAGLAISLIDY 362

Query: 352 EDIKHIDAIEK 362
           ED  H   IEK
Sbjct: 363 EDFHHFKVIEK 373


>gi|222098932|ref|YP_002532990.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
 gi|229199584|ref|ZP_04326245.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1293]
 gi|221242991|gb|ACM15701.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
 gi|228583989|gb|EEK42146.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1293]
          Length = 481

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 134/362 (37%), Positives = 221/362 (61%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS ++V A+   GY  PT +Q K IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FFEYKLSKEIVRALTGLGYDHPTEVQGKVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWAENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  ++  P  IE+     T + IEH      A   +K +LL+ +   +
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFE--AIEDEKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|167756706|ref|ZP_02428833.1| hypothetical protein CLORAM_02244 [Clostridium ramosum DSM 1402]
 gi|237732712|ref|ZP_04563193.1| helicase [Mollicutes bacterium D7]
 gi|167702881|gb|EDS17460.1| hypothetical protein CLORAM_02244 [Clostridium ramosum DSM 1402]
 gi|229384207|gb|EEO34298.1| helicase [Coprobacillus sp. D7]
          Length = 535

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 233/369 (63%), Gaps = 10/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS +V+ A+ D G+ KP+ IQ + IP++L   DV G AQTGTGKT +F   +L+ 
Sbjct: 6   FNELGLSNEVLKAIEDMGFSKPSKIQEEAIPVLLTGVDVIGQAQTGTGKTLAFGSVLLSK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +    ++ ++P+ +IL PTRELA Q+ +  E+ GK     +  + GG   E Q + +++G
Sbjct: 66  ITP--SQRKLPQAIILSPTRELAMQIHEEMERIGKYNGSRITCVYGGSDIERQIRTIKKG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR++D   R  L +N+++ +V+DEAD ML+MGF+  I+ I   V   RQT+L
Sbjct: 124 IDIIVGTPGRVMDLMRRNVLKLNDVKFVVLDEADEMLNMGFVEDIETILEKVDDDRQTIL 183

Query: 183 FSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           FSATM   ++K+++N++  N + + V +  +TA +++  +  V    ++   C L+    
Sbjct: 184 FSATMPAGIKKIAQNYMHDNFEHVAVLSKQTTATSVKQFYYEVKQKDRFEAMCRLIDVA- 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                ++ GIIFC  K++V  +   +++  ++V A+HG++ Q  RM  L  FK+GTI  +
Sbjct: 243 ----NVQTGIIFCRTKRSVDEVTEQMQQANYNVEAMHGDLSQNHRMNTLRKFKKGTINFL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+ +V HV N+++P   E+Y+HRIGRTGRA + G+A++++   +   +  
Sbjct: 299 IATDVAARGIDVENVTHVINYELPQDIESYVHRIGRTGRADKEGQAYSIITPREKGFLRQ 358

Query: 360 IEKLIEKKV 368
           IE++ +  +
Sbjct: 359 IERVTKSSI 367


>gi|269955581|ref|YP_003325370.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304262|gb|ACZ29812.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 605

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 140/374 (37%), Positives = 219/374 (58%), Gaps = 10/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FAD G+  ++V A+ D G   P PIQ  T+P+ LQ HD+ G A+TGTGKT  F +P+L
Sbjct: 68  VSFADFGVRQEIVDALTDVGITHPFPIQAMTLPVALQAHDIIGQAKTGTGKTLGFGIPLL 127

Query: 61  TIL----EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPF 112
             +    E G   +  P   + +++ PTRELA QVA +      +  +L V  + GG  +
Sbjct: 128 NRVVAPGEPGWDELVAPGKPQAVVVAPTRELAVQVAGDLATASAHRPSLRVIQIYGGRAY 187

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E Q ++L+RGA+V++ TPGR++D  N+G L +   E +V+DEAD MLD+GF+P ++ I S
Sbjct: 188 EPQIEQLQRGAEVVVGTPGRMVDLLNQGHLNLLRAETIVLDEADEMLDLGFLPDVEKILS 247

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KK 231
            +P  R T+LFSATM   +  ++  ++  P  I    P     T+++     Y  ++  K
Sbjct: 248 RLPAKRHTMLFSATMPGAVVSMARRYMSQPTHIRAADPDDEGVTVKNIKQVVYRAHALDK 307

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             +L +LLQ++   ++ I+F   K+    +   L  +GF+  AIHG++ Q +R + L   
Sbjct: 308 IEVLARLLQAEGRGRS-IVFARTKRTAAKVSDELRDRGFAAGAIHGDLGQGAREQALRAL 366

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G I ++VA+D+AARG+D+ DV HV N+  P     Y+HR+GRTGRAG  G A T V  
Sbjct: 367 RHGKIDVLVATDVAARGIDVDDVTHVVNYQCPEDERTYLHRVGRTGRAGNKGTAVTFVDW 426

Query: 352 EDIKHIDAIEKLIE 365
           +D+     I+K +E
Sbjct: 427 DDMPRWSLIDKALE 440


>gi|327485805|gb|AEA80211.1| Cold-shock DEAD-box protein A [Vibrio cholerae LMA3894-4]
          Length = 644

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 220/370 (59%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L   D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLDGRDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N   L V  + GG     Q + L
Sbjct: 66  NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 123 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL+NP+ ++V   + T   +E  +        +K   + +LL
Sbjct: 183 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HV+N+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVD 369
           IE++    ++
Sbjct: 360 IERVTRSSME 369


>gi|83648397|ref|YP_436832.1| superfamily II DNA/RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83636440|gb|ABC32407.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 593

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 140/346 (40%), Positives = 214/346 (61%), Gaps = 9/346 (2%)

Query: 18  DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLI 77
           D GY +P+PIQ ++IPL+LQ   + G+AQTGTGKTA+F LP+L  L+    +++ P+ ++
Sbjct: 29  DVGYEQPSPIQEQSIPLLLQGESILGVAQTGTGKTAAFALPLLERLD---PKIQSPQIIV 85

Query: 78  LEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           L PTRELA QVA+ F+ Y +   + TV  + GG     Q + L+RG  V++ TPGR+LDH
Sbjct: 86  LAPTRELAIQVAEAFKSYSRYLPDFTVLPIYGGQDMRGQLRSLKRGVQVIVGTPGRVLDH 145

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
             R  L ++ I  +V+DEAD ML MGFI  ++ I S  P   Q  LFSATM   +++V+E
Sbjct: 146 LQRKSLDLSQIRAVVLDEADEMLRMGFIDDVEEILSNAPGECQYALFSATMPPAIKRVAE 205

Query: 197 NFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
            +L+  K + +   +ST E I +H  +      S K   L ++L+ ++  +  IIF   K
Sbjct: 206 KYLKGAKEVRIAAKTSTVERISQHVLMV---DNSHKLDALTRVLEVEN-FEGMIIFVRTK 261

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
                L   L+ +G++  A++G+  Q+ R + +   K+G + ++VA+D+AARGLD+  +G
Sbjct: 262 SATTELAEKLQARGYAAEALNGDQTQKIREQTIDRLKKGRLDIVVATDVAARGLDVERIG 321

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
            V N+D+P   E Y+HRIGRTGRAGR GKA    A ++ + + AIE
Sbjct: 322 LVLNYDIPYDTEAYVHRIGRTGRAGREGKAILFAAPKERRLLRAIE 367


>gi|229164405|ref|ZP_04292334.1| ATP-dependent RNA helicase dbpA [Bacillus cereus R309803]
 gi|228619055|gb|EEK75952.1| ATP-dependent RNA helicase dbpA [Bacillus cereus R309803]
          Length = 481

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 132/363 (36%), Positives = 224/363 (61%), Gaps = 6/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++  L+ ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   NFSNYALNKEIVRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++K+S  ++ +P  IE+     T + IEH       +  +K +LL+ +   
Sbjct: 182 LFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVGEE--EKLSLLKDVTTI 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA
Sbjct: 240 ENP-DSCIIFCRTQENVDHVYRQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG+ GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGKKGKAITFITPYENRFLEEIE 358

Query: 362 KLI 364
             I
Sbjct: 359 TYI 361


>gi|150401787|ref|YP_001325553.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           aeolicus Nankai-3]
 gi|150014490|gb|ABR56941.1| DEAD/DEAH box helicase domain protein [Methanococcus aeolicus
           Nankai-3]
          Length = 529

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 142/366 (38%), Positives = 220/366 (60%), Gaps = 15/366 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60
           +F +LGL    V A+   G+  PTPIQ K IP++L   +DV G AQTGTGKTA+F LP++
Sbjct: 5   EFLELGLCENTVEALEKKGFKHPTPIQKKAIPMLLDGDYDVVGQAQTGTGKTAAFGLPII 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE     V+    +IL PTRELA QV+D       + NL +  + GG P + Q ++L+
Sbjct: 65  EKLENTDKEVQ---AIILTPTRELALQVSDELNSLRGSKNLKIVAMYGGQPIQEQIRQLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G +V++ TPGRI+DH  RG L ++ I+  V+DEAD MLDMGFI  I++I       ++ 
Sbjct: 122 KGVNVVVGTPGRIMDHLKRGTLRLHTIKYFVLDEADEMLDMGFIDDIEDILRYTNPDKKM 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
           LLFSAT+   +  +++ ++   K I V + + T + +E  +  V +  ++   C ++   
Sbjct: 182 LLFSATLPRRIMGLAKRYMGKYKVISVKSENLTTDMVEQVYYEVRSSDKFEALCRVI--- 238

Query: 239 LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               D  K   GI+FC  +  V ++ + L  +G+    +HG+I Q  R KIL+ FK    
Sbjct: 239 ----DINKEFYGIVFCKTRAEVNDIANKLSAKGYFAEGLHGDIAQNQREKILNRFKAKRT 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARG+D+ D+ HV N+D+P   E Y+HRIGRTGRAG+ G A T V  ++ + 
Sbjct: 295 KILVATDVAARGIDVTDLTHVVNYDIPQNPEAYVHRIGRTGRAGKRGTAITFVQPDEFRR 354

Query: 357 IDAIEK 362
           +  I++
Sbjct: 355 LKDIKR 360


>gi|153807208|ref|ZP_01959876.1| hypothetical protein BACCAC_01486 [Bacteroides caccae ATCC 43185]
 gi|149130328|gb|EDM21538.1| hypothetical protein BACCAC_01486 [Bacteroides caccae ATCC 43185]
          Length = 640

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 139/367 (37%), Positives = 227/367 (61%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP+L 
Sbjct: 4   FEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            ++    + R+P++LIL PTREL  Q+A +   Y K  + L V  + GG   ++Q + L+
Sbjct: 64  QID---VKNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  + ++ I  +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTDSINAILADVPQERNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+ ++S+N+L+N K I +   + +   ++H     +A+   K   L++++ 
Sbjct: 181 LLFSATMSPEIARISKNYLRNAKEITIGRKNESTSNVKHVAYTVHAK--DKYEALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+V
Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357

Query: 361 EKLIEKK 367
           E++I KK
Sbjct: 358 ERIIGKK 364


>gi|229072918|ref|ZP_04206114.1| ATP-dependent RNA helicase dbpA [Bacillus cereus F65185]
 gi|228710164|gb|EEL62142.1| ATP-dependent RNA helicase dbpA [Bacillus cereus F65185]
          Length = 481

 Score =  268 bits (685), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 134/362 (37%), Positives = 222/362 (61%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++K+S  ++ +P  IE+     T + IEH          +K +LL+ +   +
Sbjct: 183 FSATLPEDVEKLSRTYMNSPIHIEIKAAGITTDKIEHTLFEVIE--DEKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|332306838|ref|YP_004434689.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174167|gb|AEE23421.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 428

 Score =  268 bits (685), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 139/374 (37%), Positives = 229/374 (61%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+ L L+P +  A+   GY K TPIQ K I +  +  DV   AQTGTGKTA+F +P+L
Sbjct: 1   MNFSSLDLAPALQQAIDACGYKKMTPIQQKAIVVARRGRDVLASAQTGTGKTAAFAIPIL 60

Query: 61  T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +L+K +  V    R +IL PTRELA Q+A N   Y +  +++V  L GG+    Q  K
Sbjct: 61  QQMLDKPKETVSGTTRAIILTPTRELAEQLASNIANYAQFTDISVTALYGGVKLGGQASK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D++I TPGR+L+H     + + N+E +V+DEADRMLDMGFI  ++ + + +   R
Sbjct: 121 LKAGVDIVISTPGRLLEHMTLKNIELANVEFVVLDEADRMLDMGFISDVRQMLAQIRAVR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT++  + +++   L+N + I     +S A+T++H       +   K  L + L
Sbjct: 181 QTLLFSATISPTVNELAHKLLKNHEEIRATQLNSAADTVQHVMYPVSEE--DKIRLFKTL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  Q+  +  ++F + K+    L  +L+    +    H +  Q +R + +++FK   +Q+
Sbjct: 239 LAEQNWYQV-LVFTSTKEQADKLMAALKNSKINAGVCHADKSQGARRRAIADFKSAKLQV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+++AARG+DI  + HV N+++P   E+Y+HRIGRTGRAG+ G A + V++E+ + ++
Sbjct: 298 LIATEVAARGIDIQGLDHVVNYNLPYLPEDYVHRIGRTGRAGQQGNAISFVSREEERTVE 357

Query: 359 AIEKLIEKKVDWLN 372
            IE+LI  K+  ++
Sbjct: 358 RIERLINCKIKRIS 371


>gi|114563875|ref|YP_751389.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114335168|gb|ABI72550.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 428

 Score =  268 bits (685), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 148/366 (40%), Positives = 215/366 (58%), Gaps = 11/366 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+ GL   ++  + +  Y++PTPIQ +TIP  L   D+   A TG+GKTA+F LP+L  
Sbjct: 10  FAEFGLHTPLLARLTELKYLQPTPIQAETIPSTLTGKDLLAGANTGSGKTAAFALPILHQ 69

Query: 63  LEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQN 116
           L   RA           L+L PTRELA QVAD+F+ Y  + N  + V    GG+    Q 
Sbjct: 70  LVSRRAATSAKGNFVSALVLVPTRELAKQVADSFKSYAVHLNGDIKVVAAFGGVSVNTQM 129

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GADV++ TPGR+LD  +   L ++ +  LV+DEADRML +GF   +  + +L+P 
Sbjct: 130 LALRGGADVVVATPGRLLDLVSSNALKLSQVTTLVLDEADRMLSLGFTEELTQVLNLLPK 189

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +QTLLFSAT  DE++++++  L NP  +E+   S+ A T+    +       KK ALL 
Sbjct: 190 QKQTLLFSATFPDEVRQLTQALLVNP--LEIQLQSAEASTLVQRVMTV--NREKKTALLA 245

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LLQ Q   +  +IF   K +  +L   L K+G +    HG+  Q +R ++L  FK G I
Sbjct: 246 HLLQ-QHQWRQVLIFVGAKNSCNHLAQKLAKRGITAEVFHGDKAQGARSRVLEGFKAGDI 304

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q+++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G A TL++ ++  H
Sbjct: 305 QVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLALTLLSHDEYHH 364

Query: 357 IDAIEK 362
              IEK
Sbjct: 365 FSVIEK 370


>gi|260172628|ref|ZP_05759040.1| ATP-dependent RNA helicase [Bacteroides sp. D2]
 gi|315920918|ref|ZP_07917158.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694793|gb|EFS31628.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 644

 Score =  268 bits (685), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 140/367 (38%), Positives = 226/367 (61%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP+L 
Sbjct: 4   FEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            ++    + R+P++LIL PTREL  Q+A +   Y K  + L V  + GG   ++Q + L+
Sbjct: 64  QVD---VKNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  + ++ I  +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILADVPQERNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+ ++S+N+L+N K I +   + +   ++H  V    Q   K   L++++ 
Sbjct: 181 LLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKH--VVYTVQAKDKYEALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+V
Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357

Query: 361 EKLIEKK 367
           E++I KK
Sbjct: 358 ERIISKK 364


>gi|228908214|ref|ZP_04072060.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 200]
 gi|228851412|gb|EEM96220.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 200]
          Length = 454

 Score =  268 bits (685), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 144/364 (39%), Positives = 222/364 (60%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP   
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLP--- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
           ILEK        + LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 63  ILEKINPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|148977343|ref|ZP_01813957.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3]
 gi|145963456|gb|EDK28720.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3]
          Length = 646

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 219/370 (59%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L L+  ++ A+   G+V PTPIQ   IPL+L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             +   + +   P+ +I+ PTRELA QVA   +  G++   L V  + GG     Q + L
Sbjct: 66  NKINLNQHK---PQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVIEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR+ D   R +L ++     V+DEAD ML MGF+  +  I    P + Q
Sbjct: 123 SRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++ + + +L+NP +++V   + T + +   F        +K   + +LL
Sbjct: 183 RVLFSATMPPMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQNFWVVKG--VEKDEAMSRLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVD 369
           IE++ +  ++
Sbjct: 360 IERVTKSTME 369


>gi|124026185|ref|YP_001015301.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           NATL1A]
 gi|123961253|gb|ABM76036.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           NATL1A]
          Length = 589

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 224/386 (58%), Gaps = 21/386 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++   S +++  + D GY  PTPIQ   IP +L   D+ G AQTGTGKTA+F LP   I
Sbjct: 38  FSEFNFSEELIQTISDKGYSSPTPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALP---I 94

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           LE+ +  V  P+ L+L PTRELA QVA++F  Y   + +  V  + GG  F  Q   L R
Sbjct: 95  LERLKKNVGHPQVLVLAPTRELAMQVAESFRTYSAGHPHFKVLAIYGGSDFRNQINTLRR 154

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR++DH  +  L  +++  LV+DEAD ML MGFI  ++ I   +P  RQ +
Sbjct: 155 GVDVVVGTPGRVMDHMRQKTLNTSHLSCLVLDEADEMLRMGFIDDVEWILEQLPEERQLV 214

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++S+ +L +P  I +         I   +++    Y  K   LQ++L++
Sbjct: 215 LFSATMPSEIRRLSKKYLNSPAEITIKATELKERLIRQRYISVQNVY--KVNALQRVLEA 272

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  IIF   K   + +   LE  G++V  ++G+I Q  R + +   ++G+I ++VA
Sbjct: 273 V-SEEGVIIFARTKAITIVVAEKLESYGYNVAVLNGDIPQNQRERTVERLRQGSINILVA 331

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N+D+P   E Y+HRIGRTGRAGR+G+A   V   +   +  +E
Sbjct: 332 TDVAARGLDVDRIGLVINYDMPFDREAYVHRIGRTGRAGRNGEAILFVNPRERSFLSNLE 391

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDI 387
           +              ++  P+EK+DI
Sbjct: 392 R--------------AVGQPIEKMDI 403


>gi|282899322|ref|ZP_06307291.1| DEAD/DEAH box helicase-like protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195779|gb|EFA70707.1| DEAD/DEAH box helicase-like protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 497

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 140/362 (38%), Positives = 214/362 (59%), Gaps = 5/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LG+SP+    + + G+  PT IQ + IP +L   DV G +QTGTGKTA+F LP+L
Sbjct: 4   ITFQELGISPERATHLENMGFTTPTNIQTQAIPQLLAGRDVVGQSQTGTGKTAAFSLPIL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  +   R  + L+L PTRELA QV D   ++  +  L V  + GG   + Q  +L+
Sbjct: 64  ERLDPNK---RAVQALVLTPTRELAMQVHDAISQFMGDSELRVLAIYGGQSIDRQMIQLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++D   RG L ++ ++  V+DEAD ML MGFI  +  I S  P  RQT
Sbjct: 121 RGVHVVVGTPGRVIDLLERGSLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPQNRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++++   FL +P  + V  P +T   I          ++K  A LQ +L+
Sbjct: 181 ALFSATMPPSIRQLVNKFLNSPVTVTVEQPKATPTKINQVAYLIPRHWTKAKA-LQPILE 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D  +  +IF   ++    L + L+  G SV   HG++ Q++R ++L+ F+   ++ +V
Sbjct: 240 MEDP-ETALIFVRTRRTAAELTNQLQSAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV NFD+P+  E Y+HRIGRTGRAG+ G A +LV   + +   A 
Sbjct: 299 ATDIAARGLDVDLLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQAF 358

Query: 361 EK 362
           E+
Sbjct: 359 ER 360


>gi|229007762|ref|ZP_04165353.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock1-4]
 gi|228753532|gb|EEM02979.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock1-4]
          Length = 481

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 222/364 (60%), Gaps = 10/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS ++V A+    Y +PT +Q K IP+ L++ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FKEYALSKEIVRALTSLKYEQPTEVQGKVIPVALEKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ LIL PTRELA QV ++    G+   +    + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALILTPTRELAVQVKEDITNIGRFKRIKATAVYGKSPFVRQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G   +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTDRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL--LQ 240
           FSAT+ ++++ +S  ++++P  IE+     T + IEH  +    +  +K +LLQ +  L+
Sbjct: 183 FSATLPEDVENLSHTYMKSPTHIEIKASGITTDKIEHILLEVREE--EKFSLLQDITTLE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D+    IIFC  ++NV ++   L++ G+    IHG + Q  R  ++++FK G  + +V
Sbjct: 241 NPDSC---IIFCRTQENVDHVFRQLKRSGYPCDKIHGGMIQEDRFAVMNDFKRGKFRYLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T V   + + +  I
Sbjct: 298 ATDVAARGIDIENITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFVTPYEERFLVEI 357

Query: 361 EKLI 364
           E+ I
Sbjct: 358 EEYI 361


>gi|161501867|ref|NP_762119.2| ATP-dependent RNA helicase DbpA [Vibrio vulnificus CMCP6]
 gi|319999566|gb|AAO07109.2| ATP-dependent RNA helicase DbpA [Vibrio vulnificus CMCP6]
          Length = 459

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 144/363 (39%), Positives = 223/363 (61%), Gaps = 7/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P+++  +   GY + TPIQ +++PLVL   DV G  +TG+GKTA+F L +L+ 
Sbjct: 5   FNTLSLKPELLSTLDTLGYTEMTPIQAQSLPLVLDGKDVIGQGKTGSGKTATFALGLLSN 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA       +  +N+ V  L GG+P   Q   LE 
Sbjct: 65  LNVSRFRVQ---SLVLCPTRELADQVATEIRTLARGIHNIKVLTLCGGMPMGPQILSLEH 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH ++G++ +  +  LV+DEADRML+MGF   I  I  + P  RQTL
Sbjct: 122 GAHILVGTPGRILDHLSKGRIDLAELNTLVLDEADRMLEMGFQDAIDAIIDVAPTQRQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  ++++ ++   +QNP+ ++V + +    TIE  F        +  AL   LL  
Sbjct: 182 LFSATFPEQIETIASKVMQNPEMVKVES-THQKSTIEQRFYQLENTEERDNALEALLLTH 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   ++ ++FCN KK V N+   L  + FSV  +HG+++QR R + L+ F   +I ++VA
Sbjct: 241 RP--ESTVVFCNTKKEVQNVTDELNHRRFSVIELHGDMEQRERERALTMFANKSISILVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  V NF++    E ++HRIGRTGRAG  G A +  +++++  ++ IE
Sbjct: 299 TDVAARGLDVDNLDAVINFELSRDPEVHVHRIGRTGRAGAKGIAISFFSEKELYRVERIE 358

Query: 362 KLI 364
           + +
Sbjct: 359 EYM 361


>gi|239918016|ref|YP_002957574.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
 gi|239839223|gb|ACS31020.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
          Length = 611

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 141/375 (37%), Positives = 213/375 (56%), Gaps = 16/375 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FAD G+ P +V A+   G V P PIQ  T+P+ L  HD+ G A+TGTGKT  F +P L  
Sbjct: 39  FADFGVHPAIVEALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPALQR 98

Query: 61  ----------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                      +  KG A    P+ LI+ PTRELA QVA +         L +A + GG 
Sbjct: 99  AIGPGEPGWDGLEAKGTAGA--PQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGR 156

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
            +E Q ++L+RG ++++ TPGR++D   +  L ++ +  +V+DEAD MLD+GF+P ++ +
Sbjct: 157 AYEPQIEELQRGVEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETL 216

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYS 229
            + VP  RQT+LFSATM   +  ++  ++  P  I    P     T +      Y A + 
Sbjct: 217 LAAVPAVRQTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHM 276

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            K  L+ + LQ++   +  IIF   K+    +   L  +GF+  A+HG++ Q +R + L 
Sbjct: 277 DKDELVARALQAEGRGRT-IIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALR 335

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+ G + ++VA+D+AARG+D+ DV HVFNF  P   + Y+HR+GRTGRAG  G A TLV
Sbjct: 336 AFRNGKVDILVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLV 395

Query: 350 AKEDIKHIDAIEKLI 364
             ED+     I+K +
Sbjct: 396 DWEDMPRWSLIDKAL 410


>gi|255079166|ref|XP_002503163.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
 gi|226518429|gb|ACO64421.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
          Length = 450

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 154/423 (36%), Positives = 245/423 (57%), Gaps = 15/423 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  +G+  ++  A  D G+  P+ IQ ++IP  LQ  DV G+AQTG+GKT +F LP+L  
Sbjct: 17  FLGIGVCEELAEAAADLGWKAPSEIQAQSIPQALQGKDVIGLAQTGSGKTGAFALPILQE 76

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+K +A       L+L PTRELA Q+A+ FE  G    +  A+L+GGI   AQ+ +L +
Sbjct: 77  LLDKPQAFF----ALVLSPTRELAIQIAEQFEALGAGIGVKTAVLVGGIDMMAQSIQLGK 132

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR++DH    K   +  +++L +DEADR+L++ F   I  I  +VP  R+T
Sbjct: 133 RPHVVVGTPGRVVDHLTNTKGFTLKQLQVLCLDEADRLLNLDFEQEIDQILKVVPRDRRT 192

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA---LLQQ 237
            LFSATMT ++ K+    L+NP ++EV+   ST ++++  ++   A++ K C    L  +
Sbjct: 193 QLFSATMTSKVAKLQRACLRNPVKVEVSAKYSTVDSLKQNYLFIPAKH-KDCYVNYLFNE 251

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L  S  TM      C+Q + +  +  +L   GF    IHG + Q  R+  L+ FK G   
Sbjct: 252 L--SSSTMMVFTRTCDQTRKLALVARNL---GFGAIPIHGQMSQPKRIGALNKFKAGERN 306

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A+RGLDIP V  V N+DVP  +++Y+HR+GRT RAGR G A T+V + D++  
Sbjct: 307 ILVATDVASRGLDIPAVDVVINYDVPQNSKDYVHRVGRTARAGRSGLAITMVTQYDVELY 366

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE+LI+KK+D  +    ++    E+++ AQ    ++      K  G  R +     + 
Sbjct: 367 QKIERLIQKKLDAYDAPEEAVLLMNERVNEAQRIAQQQMREADAKGGGKKRNRDGDGEED 426

Query: 418 SHI 420
           S +
Sbjct: 427 SQL 429


>gi|72382486|ref|YP_291841.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Prochlorococcus marinus str. NATL2A]
 gi|72002336|gb|AAZ58138.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str.
           NATL2A]
          Length = 589

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 224/386 (58%), Gaps = 21/386 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++   S +++  + D GY  PTPIQ   IP +L   D+ G AQTGTGKTA+F LP   I
Sbjct: 38  FSEFNFSEELIQTISDKGYSSPTPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALP---I 94

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           LE+ +  V  P+ L+L PTRELA QVA++F  Y   + +  V  + GG  F  Q   L R
Sbjct: 95  LERLKKNVGHPQVLVLAPTRELAMQVAESFRTYSAGHPHFKVLAIYGGSDFRNQINTLRR 154

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR++DH  +  L  +++  LV+DEAD ML MGFI  ++ I   +P  RQ +
Sbjct: 155 GVDVVVGTPGRVMDHMRQKTLNTSHLSCLVLDEADEMLRMGFIDDVEWILEQLPEERQLV 214

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++S+ +L +P  I +         I   +++    Y  K   LQ++L++
Sbjct: 215 LFSATMPSEIRRLSKKYLNSPAEITIKATELKERLIRQRYISVQNVY--KVNALQRVLEA 272

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  IIF   K   + +   LE  G++V  ++G+I Q  R + +   ++G+I ++VA
Sbjct: 273 V-SEEGVIIFARTKAITIVVAEKLESYGYNVAVLNGDIPQNQRERTVERLRQGSINILVA 331

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N+D+P   E Y+HRIGRTGRAGR+G+A   V   +   +  +E
Sbjct: 332 TDVAARGLDVDRIGLVINYDMPFDREAYVHRIGRTGRAGRNGEAILFVNPRERSFLSNLE 391

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDI 387
           +              ++  P+EK+DI
Sbjct: 392 R--------------AVGQPIEKMDI 403


>gi|323490311|ref|ZP_08095526.1| ATP-dependent RNA helicase [Planococcus donghaensis MPA1U2]
 gi|323395981|gb|EGA88812.1| ATP-dependent RNA helicase [Planococcus donghaensis MPA1U2]
          Length = 481

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 138/364 (37%), Positives = 222/364 (60%), Gaps = 10/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  +S ++V A+   GY +PT +Q K IP+ L + D+   +QTG+GKTA+F +P+  +
Sbjct: 6   FDEYQISEQIVKALDGLGYTEPTEVQEKVIPVALSKTDLTVKSQTGSGKTAAFGIPICEL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    +   P+ LIL PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VDWEENK---PQALILTPTRELADQVKEDITNIGRFKRIKAAAVYGKQPFAYQQAELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+LDH  RG L +  IE LV+DEAD ML+MGF+  +++I + +P  R T+L
Sbjct: 123 CHVVVGTPGRVLDHIERGTLKLEQIEYLVLDEADEMLNMGFVEQVESIINKLPKQRTTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ--LLQ 240
           FSAT+ + ++K+ + ++ +P+ IE+ +  +  + I+H       Q  KK +LL+   +++
Sbjct: 183 FSATLPENVEKLQKKYMIDPQHIEIASTETLTDQIDHSLFVVAEQ--KKFSLLRDVTIIE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D+    IIFC  K NV  +   LEK  ++   +HG + Q  R  +++ FK G  + +V
Sbjct: 241 NPDSC---IIFCRTKDNVDFVMEQLEKHYYTCDKLHGGMLQEDRTAVMNEFKRGEFRYLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + HV NFD+P   E+Y+HR GRTGRAG+ GKA + V   + K +  I
Sbjct: 298 ATDVAARGIDIDSITHVINFDLPMEKESYVHRSGRTGRAGKTGKAISFVTPNEDKFLAEI 357

Query: 361 EKLI 364
           E  I
Sbjct: 358 ESYI 361


>gi|302558562|ref|ZP_07310904.1| ATP-dependent RNA helicase DeaD [Streptomyces griseoflavus Tu4000]
 gi|302476180|gb|EFL39273.1| ATP-dependent RNA helicase DeaD [Streptomyces griseoflavus Tu4000]
          Length = 868

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 147/390 (37%), Positives = 223/390 (57%), Gaps = 21/390 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F +LG+ P+   A+   G + P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L  
Sbjct: 42  FRELGILPETAEALEAVGIITPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLER 101

Query: 61  -TI---LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            T+   +E GRAR       P+ L++ PTREL  QV ++    GK  N+ V  + GG  +
Sbjct: 102 VTVPADVEAGRARPEDLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVTAIYGGRAY 161

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E Q + L++G DV++ TPGR+LD   + KL + +++ LV+DEAD MLD+GF+P ++ I +
Sbjct: 162 EPQVEALKKGVDVVVGTPGRLLDLAGQKKLNLKHVKALVLDEADEMLDLGFLPDVEKIIN 221

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKK 231
            +P  RQT+LFSATM   +  ++  ++  P  I    P     T+ +     Y A    K
Sbjct: 222 FLPVKRQTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANTTQFVYRAHNMDK 281

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             ++ ++LQ+ D     ++FC  K+   +L   L+++GF+  A+HG++ Q +R + L  F
Sbjct: 282 PEMVSRILQA-DGRGLVMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAF 340

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAG  G A TLV  
Sbjct: 341 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGAKGTAITLVDW 400

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           +DI     I K +         DL   NPP
Sbjct: 401 DDIPRWQLINKAL---------DLGFGNPP 421


>gi|229069971|ref|ZP_04203249.1| ATP-dependent RNA helicase [Bacillus cereus F65185]
 gi|228713171|gb|EEL65068.1| ATP-dependent RNA helicase [Bacillus cereus F65185]
          Length = 458

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 143/364 (39%), Positives = 224/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ + IP+++   D+ G A+TGTGKT +FVLP   
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLP--- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
           ILEK  +     + LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 63  ILEKIDSESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K  V  L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKLRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|118575685|ref|YP_875428.1| superfamily II helicase [Cenarchaeum symbiosum A]
 gi|118194206|gb|ABK77124.1| superfamily II helicase [Cenarchaeum symbiosum A]
          Length = 434

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 141/374 (37%), Positives = 220/374 (58%), Gaps = 7/374 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG+   V+ A+ D G+ K  PIQ   IP++L   DV G A TGTGKT ++ + ML  
Sbjct: 4   FEELGIKQNVLDALRDMGFEKAFPIQEAAIPVLLTGRDVVGQAHTGTGKTGAYSISMLQE 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++G       + LI+ PTRELA Q+ +  +K+ K   +    + GG     Q   L+RG
Sbjct: 64  IKEGGG----IQGLIVAPTRELAVQITEEVKKFAKYTKVRPVAIYGGQSMGVQLDALKRG 119

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A++L+ TPGR++DH  RG + ++ +  LV+DEAD MLDMGFI  IQ I  L P  +   L
Sbjct: 120 AEILVATPGRLIDHIKRGSISIDRVTHLVLDEADTMLDMGFIDDIQFILDLTPDEKVMSL 179

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+ ++SE +L+NPK+  ++    + E I+  ++    +  +K   L   ++ +
Sbjct: 180 FSATMPIEILRLSEEYLKNPKQFLLDADDLSGEGIDQSYLVIRDR--EKMDYLVDFIK-E 236

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     I+FC+ K    ++   L K+ +   AI G++ Q  R + +S F+    Q++VA+
Sbjct: 237 NGKGQTIVFCSTKYRTRDVARMLHKRNYGAVAIEGDMSQHRREQSMSRFRTAKAQILVAT 296

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+D+P V  V N+DVPN+   Y HRIGRT RAG  G+A TLV+   +   D I++
Sbjct: 297 DVAARGIDVPRVALVVNYDVPNQEMIYFHRIGRTARAGAKGRAITLVSYSSVSEFDVIKR 356

Query: 363 LIEKKVDWLNGDLS 376
            I+ KV +LN ++ 
Sbjct: 357 QIKAKVTYLNDEMG 370


>gi|237720587|ref|ZP_04551068.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4]
 gi|293373374|ref|ZP_06619730.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CMC
           3f]
 gi|229450338|gb|EEO56129.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4]
 gi|292631660|gb|EFF50282.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CMC
           3f]
          Length = 644

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 140/367 (38%), Positives = 226/367 (61%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP+L 
Sbjct: 4   FEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            ++    + R+P++LIL PTREL  Q+A +   Y K  + L V  + GG   ++Q + L+
Sbjct: 64  QVD---VKNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  + ++ I  +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILADVPQERNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+ ++S+N+L+N K I +   + +   ++H  V    Q   K   L++++ 
Sbjct: 181 LLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKH--VVYTVQAKDKYEALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+V
Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357

Query: 361 EKLIEKK 367
           E++I KK
Sbjct: 358 ERIISKK 364


>gi|90408198|ref|ZP_01216366.1| putative ATP-dependent RNA helicase DbpA [Psychromonas sp. CNPT3]
 gi|90310728|gb|EAS38845.1| putative ATP-dependent RNA helicase DbpA [Psychromonas sp. CNPT3]
          Length = 462

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 221/369 (59%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L L+  ++  +    Y + T IQ +++P +L   DV    +TG+GKTA+F L +L
Sbjct: 4   LSFDQLALNSALLHNLKSLEYTQMTEIQAQSLPHILAGKDVIAQGKTGSGKTAAFALGLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             L   R R++   +LIL PTRELA QV+    +  +  +N+ V  L GG PF  Q   L
Sbjct: 64  QKLNVKRFRIQ---SLILCPTRELADQVSSEIRRLARGIHNIKVLTLCGGAPFGPQIGSL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI DH  +  L ++ + +LV+DEADRMLDMGF+  I++I    P +RQ
Sbjct: 121 EHGAHIIVGTPGRIQDHLRKQTLCLDEVSMLVLDEADRMLDMGFVDAIEDIIEQAPKSRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  D++Q++S N L++P  I+V        TI   F    +   +  AL   +L
Sbjct: 181 TLLFSATFPDQIQQISRNILRDPVSIKVEAMHDD-NTISQYFYLVRSAEERMLALRLLIL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q Q T  + ++FCN K+ V  +   L  +GFS  A+HG++DQ+ R + L  F   +  ++
Sbjct: 240 QYQPT--SAVVFCNTKREVQEVAEELNNRGFSALALHGDLDQKDRDQALIRFSNRSCSIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++  VFN+++ +  E ++HRIGRTGRAG  G AF+  + +D   I  
Sbjct: 298 VATDVAARGLDIENLSAVFNYNLAHDQEIHVHRIGRTGRAGSKGMAFSFYSAKDEHRIHL 357

Query: 360 IEKLIEKKV 368
           +E L+++ +
Sbjct: 358 LEDLLDRNI 366


>gi|119469744|ref|ZP_01612613.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Alteromonadales bacterium TW-7]
 gi|119446991|gb|EAW28262.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Alteromonadales bacterium TW-7]
          Length = 435

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 141/368 (38%), Positives = 216/368 (58%), Gaps = 13/368 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +LGL P++   + D  Y +PTPIQ K IP VL   D+   A TG+GKTA+F LPML  
Sbjct: 10  FNELGLIPELQARLTDLEYSQPTPIQAKAIPSVLAGSDLIAGANTGSGKTATFALPMLQK 69

Query: 62  -ILEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEA 114
             LE+G  +          LIL PTRELA QVAD+ + Y  N+N  +    + GG+    
Sbjct: 70  LFLEQGAKKTASKGNFVTGLILVPTRELATQVADSVKSYSANFNGAIKTVAVFGGVSVNT 129

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L  GAD+++ TPGR+LD  +   + ++ +  LV+DEADRML +GF   +  + +L+
Sbjct: 130 QMQALRGGADIIVATPGRLLDLISSNAIKLDKVTTLVLDEADRMLSLGFTEELAELLALM 189

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  +QT+LFSAT  +++ ++++  L NP  I+V +   +   ++  F     +   K  +
Sbjct: 190 PAKKQTMLFSATFPEQVTQLTQKLLTNPVEIQVQSKDEST-LVQRVFTVNKGE---KTTV 245

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L++ +   +  +IF N KK+  +L   LEK+G +    HG+  Q  R +++  FK G
Sbjct: 246 LAHLIK-EHKWRQALIFVNAKKDCEHLAGKLEKRGINAQVFHGDKGQSERTRVIEKFKAG 304

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I++++A+D+AARGLDI  +  V NF++P    +Y+HRIGR+GRAG  G A +L+  ED 
Sbjct: 305 EIEVLIATDIAARGLDIAKLPVVINFNLPRSPADYMHRIGRSGRAGEVGLALSLIDYEDF 364

Query: 355 KHIDAIEK 362
            H   IEK
Sbjct: 365 HHFKIIEK 372


>gi|163943135|ref|YP_001648019.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|163865332|gb|ABY46391.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
          Length = 481

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 134/362 (37%), Positives = 222/362 (61%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FTDYALSKEIVRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +++K+S  ++ +P  IE+     T + IEH       +  +K +LL+ +   +
Sbjct: 183 FSATLPKDVEKLSRTYMDSPTHIEIKATGITTDKIEHTLFE--MKEEEKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVFQQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG +GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIEE 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|313898319|ref|ZP_07831856.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium sp. HGF2]
 gi|312956701|gb|EFR38332.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium sp. HGF2]
          Length = 585

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 141/351 (40%), Positives = 214/351 (60%), Gaps = 9/351 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L +S +V+ AV + GY   T IQ ++IPL+++  DV G + TGTGKTA+F +P +  
Sbjct: 4   FNELQISSEVMKAVEEMGYENATDIQAQSIPLIMEGKDVLGRSNTGTGKTAAFGIPAIEK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           + +G    R P  LI+ PTREL  QVA    K+ K    + +  + GG P + Q + L+R
Sbjct: 64  VCQG---TRYPNALIICPTRELVTQVATELRKFSKYKEGVKIVPIYGGQPIDRQIQLLKR 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TRQ 179
           G  +++ TPGRI+DH NR  L ++N  ++++DEAD ML+MGF   I+ I S++P     Q
Sbjct: 121 GCGIVVGTPGRIMDHLNRRTLKLDNTNMVILDEADEMLNMGFKEDIEEILSMMPEGNEHQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT   E+ ++++ F  +P R+E+ +   T +T+E  +    A   KK   L+ LL
Sbjct: 181 TILFSATWPAEILRITKEFQNDPVRVEIKSAQRTIDTVEQIYYD--APRGKKANALRVLL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     +IFCN KK V  LC  L K      ++HG++ Q  R +++  F+ G   ++
Sbjct: 239 SHYDP-DLCMIFCNTKKMVDELCDELNKHNIKAISLHGDMKQEFRSRVMEQFRSGNYPIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           +A+D+AARG+D+ D+  V NFD+P   E YIHR+GRTGRAG+ G A TLV+
Sbjct: 298 IATDVAARGIDVDDIDLVVNFDIPQDNEYYIHRVGRTGRAGKKGLAITLVS 348


>gi|160882942|ref|ZP_02063945.1| hypothetical protein BACOVA_00904 [Bacteroides ovatus ATCC 8483]
 gi|156111625|gb|EDO13370.1| hypothetical protein BACOVA_00904 [Bacteroides ovatus ATCC 8483]
          Length = 644

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 140/367 (38%), Positives = 226/367 (61%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP+L 
Sbjct: 4   FEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            ++    + R+P++LIL PTREL  Q+A +   Y K  + L V  + GG   ++Q + L+
Sbjct: 64  QID---VKNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  + ++ I  +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILADVPQERNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+ ++S+N+L+N K I +   + +   ++H  V    Q   K   L++++ 
Sbjct: 181 LLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKH--VVYTVQAKDKYEALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+V
Sbjct: 239 YYPQIY-GIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRDI 357

Query: 361 EKLIEKK 367
           E++I KK
Sbjct: 358 ERIISKK 364


>gi|157376984|ref|YP_001475584.1| ATP-dependent RNA helicase DbpA [Shewanella sediminis HAW-EB3]
 gi|157319358|gb|ABV38456.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 458

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 152/386 (39%), Positives = 230/386 (59%), Gaps = 14/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P+++  +   GY   TPIQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 1   MSFSTLTLKPELLDNLKTMGYDSMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             L   R R++   +L+L PTRELA QVA       +  +N+ V  L GG+P   Q   L
Sbjct: 61  HKLNVKRFRIQ---SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH +R +L + ++  LV+DEADRML+MGF+P +  I + +P  RQ
Sbjct: 118 EHGAHIIVGTPGRIIDHLSRERLSLEDVNTLVLDEADRMLEMGFLPDLDYIMAQMPRERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   ++QK++E  +  P  ++V T +  + +I+  F    +   ++ AL   LL
Sbjct: 178 TLLFSATFPKQIQKIAEEIMYEPVMVKV-TSTHDSSSIDQHFYQIDSNKDRQKALRLLLL 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q +   ++ ++FCN K+   ++  +L   GFSV A+HG+++QR R   L  F   +  +M
Sbjct: 237 QHRP--ESAVVFCNTKRETKDVAATLANDGFSVVALHGDLEQRDRDITLMQFANKSASIM 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N++     E +IHRIGRTGRAG  G AFT    +D   I  
Sbjct: 295 VATDVAARGLDIEALDMVINYEFAFDTEVHIHRIGRTGRAGSKGAAFTFYTYDDDYKI-- 352

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKI 385
             KL+E   ++L+ D+ S   P E +
Sbjct: 353 --KLLE---EYLDHDIVSEGLPPENL 373


>gi|281415806|ref|ZP_06247548.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
          Length = 597

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 141/375 (37%), Positives = 213/375 (56%), Gaps = 16/375 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FAD G+ P +V A+   G V P PIQ  T+P+ L  HD+ G A+TGTGKT  F +P L  
Sbjct: 39  FADFGVHPAIVEALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPALQR 98

Query: 62  -----------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                      +  KG A    P+ LI+ PTRELA QVA +         L +A + GG 
Sbjct: 99  AIGPGEPGWDGLEAKGTAGA--PQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGR 156

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
            +E Q ++L+RG ++++ TPGR++D   +  L ++ +  +V+DEAD MLD+GF+P ++ +
Sbjct: 157 AYEPQIEELQRGVEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETL 216

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYS 229
            + VP  RQT+LFSATM   +  ++  ++  P  I    P     T +      Y A + 
Sbjct: 217 LAAVPAVRQTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHM 276

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            K  L+ + LQ++   +  IIF   K+    +   L  +GF+  A+HG++ Q +R + L 
Sbjct: 277 DKDELVARALQAEGRGRT-IIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALR 335

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+ G + ++VA+D+AARG+D+ DV HVFNF  P   + Y+HR+GRTGRAG  G A TLV
Sbjct: 336 AFRNGKVDILVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLV 395

Query: 350 AKEDIKHIDAIEKLI 364
             ED+     I+K +
Sbjct: 396 DWEDMPRWSLIDKAL 410


>gi|299146922|ref|ZP_07039989.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_23]
 gi|298514807|gb|EFI38689.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_23]
          Length = 644

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 140/367 (38%), Positives = 226/367 (61%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP+L 
Sbjct: 4   FEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            ++    + R+P++LIL PTREL  Q+A +   Y K  + L V  + GG   ++Q + L+
Sbjct: 64  QVD---VKNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  + ++ I  +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILADVPQERNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+ ++S+N+L+N K I +   + +   ++H  V    Q   K   L++++ 
Sbjct: 181 LLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKH--VVYTVQAKDKYEALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+V
Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357

Query: 361 EKLIEKK 367
           E++I KK
Sbjct: 358 ERIISKK 364


>gi|53711460|ref|YP_097452.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46]
 gi|52214325|dbj|BAD46918.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46]
          Length = 636

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 138/367 (37%), Positives = 226/367 (61%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++ 
Sbjct: 4   FEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
             +K   + R+P++L+L PTREL  Q+A +   Y K  + L V  + GG   ++Q + L+
Sbjct: 63  --QKINVKNRIPQSLVLCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  + +  +  +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTDSINAILADVPQERNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+ ++S+N+L N K I +   + +   ++H     +A+   K A L++++ 
Sbjct: 181 LLFSATMSPEIARISKNYLHNAKEITIGRKNESTSNVKHVVYTVHAK--DKYAALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   IQ++V
Sbjct: 239 YYPQIY-GIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNIQILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357

Query: 361 EKLIEKK 367
           E++I KK
Sbjct: 358 ERIIGKK 364


>gi|153827325|ref|ZP_01979992.1| cold-shock deAd box protein a [Vibrio cholerae MZO-2]
 gi|262169080|ref|ZP_06036773.1| cold-shock DEAD-box protein A [Vibrio cholerae RC27]
 gi|262190964|ref|ZP_06049177.1| cold-shock DEAD-box protein A [Vibrio cholerae CT 5369-93]
 gi|149738767|gb|EDM53109.1| cold-shock deAd box protein a [Vibrio cholerae MZO-2]
 gi|262022361|gb|EEY41069.1| cold-shock DEAD-box protein A [Vibrio cholerae RC27]
 gi|262033168|gb|EEY51693.1| cold-shock DEAD-box protein A [Vibrio cholerae CT 5369-93]
          Length = 643

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 221/370 (59%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N   L V  + GG     Q + L
Sbjct: 66  NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 123 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL++P+ ++V   + T   +E  +        +K   + +LL
Sbjct: 183 RVLFSATMPPMVKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HV+N+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVD 369
           IE++    ++
Sbjct: 360 IERVTRSSME 369


>gi|229181700|ref|ZP_04309023.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 172560W]
 gi|228601733|gb|EEK59231.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 172560W]
          Length = 481

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 134/362 (37%), Positives = 222/362 (61%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++K+S  ++ +P  IE+     T + IEH          +K +LL+ +   +
Sbjct: 183 FSATLPEDVEKLSRTYMNSPIHIEIKAAGITTDKIEHTLFEVIE--DEKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|147671700|ref|YP_001215271.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
 gi|153216449|ref|ZP_01950468.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 1587]
 gi|153802978|ref|ZP_01957564.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MZO-3]
 gi|153830498|ref|ZP_01983165.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 623-39]
 gi|254292037|ref|ZP_04962815.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae AM-19226]
 gi|297580174|ref|ZP_06942101.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae RC385]
 gi|124114251|gb|EAY33071.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 1587]
 gi|124121501|gb|EAY40244.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MZO-3]
 gi|146314083|gb|ABQ18623.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
 gi|148874031|gb|EDL72166.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 623-39]
 gi|150422062|gb|EDN14031.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae AM-19226]
 gi|227015452|gb|ACP11661.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
 gi|297535820|gb|EFH74654.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae RC385]
          Length = 663

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 221/370 (59%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 26  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N   L V  + GG     Q + L
Sbjct: 86  NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 142

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 143 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 202

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL++P+ ++V   + T   +E  +        +K   + +LL
Sbjct: 203 RVLFSATMPPMVKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 261 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HV+N+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 320 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 379

Query: 360 IEKLIEKKVD 369
           IE++    ++
Sbjct: 380 IERVTRSSME 389


>gi|302392742|ref|YP_003828562.1| DEAD/DEAH box helicase domain protein [Acetohalobium arabaticum DSM
           5501]
 gi|302204819|gb|ADL13497.1| DEAD/DEAH box helicase domain protein [Acetohalobium arabaticum DSM
           5501]
          Length = 527

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 150/369 (40%), Positives = 221/369 (59%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS ++  AV D G+ + TPIQ + IP +L   DV G AQTGTGKTA+F +P   I
Sbjct: 6   FEELNLSNEITKAVEDMGFEEATPIQTEAIPHLLAGKDVIGQAQTGTGKTAAFGIP---I 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKLE 120
           LEK     +  + L+L PTRELA QV++   +  K Y   +  L   GG   + Q K L+
Sbjct: 63  LEKIDPDDKSVQALVLCPTRELAIQVSEEIGRLAK-YKRKIKTLPVYGGQSIKRQIKALK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  ++I TPGR +DH  RG L  +N++++++DEAD ML+MGF   I+ I   V   RQT
Sbjct: 122 KGVQIVIGTPGRTMDHMRRGTLKFDNLKMVILDEADEMLNMGFRDDIETILEGVKGKRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + FSATM   + K+ + +  +P+ ++V     T   IE  +         K  +L +L+ 
Sbjct: 182 IFFSATMPQSILKLRKKYQTDPEIVKVVHKKLTVPNIEQGYFEV--NRRNKLEVLSRLID 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  K  I+FCN +K V  L   L+ +G+ V  IHG ++Q  R ++++ FK GTI+ +V
Sbjct: 240 IYNP-KLSIVFCNTRKQVDELTIQLQARGYFVDGIHGGLNQPQRDRVMNKFKNGTIETLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGR GR G AFT V  ++I  +  I
Sbjct: 299 ATDVAARGIDVDDVEAVFNYDIPQDIEYYVHRIGRTGRVGRQGYAFTFVVGKEIYQLKKI 358

Query: 361 EKLIEKKVD 369
           EK  + K++
Sbjct: 359 EKYAKTKIE 367


>gi|218676896|ref|YP_002395715.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218325164|emb|CAV27059.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 689

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 220/370 (59%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L L+  ++ A+   G+V PTPIQ   IPL+L+  D  G AQTGTGKTA+F LP+L
Sbjct: 34  IQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 93

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             +   + +   P+ +I+ PTRELA QVA   +  G++   L V  + GG     Q + L
Sbjct: 94  NKINLNQHK---PQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQMRAL 150

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR+ D   R +L ++     V+DEAD ML MGF+  +  I    P + Q
Sbjct: 151 SRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQ 210

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++ + + +L+NP +++V   + T + +   +        +K   + +LL
Sbjct: 211 RVLFSATMPPMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQNYWVVKG--VEKDEAMSRLL 268

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 269 ETEET-DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 327

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 328 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 387

Query: 360 IEKLIEKKVD 369
           IE++ + +++
Sbjct: 388 IERVTKSQME 397


>gi|330961645|gb|EGH61905.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 442

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 219/371 (59%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               +E  +      R L+L PTRELA QV ++  +Y ++  L+     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD + +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLYRQKAIKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A +++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++        ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVD 369
           AIE L  + ++
Sbjct: 358 AIEVLTRQTLE 368


>gi|51245828|ref|YP_065712.1| ATP-dependent RNA helicase DbpA [Desulfotalea psychrophila LSv54]
 gi|50876865|emb|CAG36705.1| probable ATP-independent RNA helicase (DbpA) [Desulfotalea
           psychrophila LSv54]
          Length = 469

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 150/379 (39%), Positives = 228/379 (60%), Gaps = 10/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  +   +   GY + TPIQ +++P VL+  D+   A+TG+GKTA+F + +L  
Sbjct: 4   FTTLALSKAMTDNLEIMGYHEMTPIQAESLPHVLEGEDLLAQAKTGSGKTAAFGIGLLHN 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+    RV+   TL++ PTRELA QVA    +  +  +N+ +  L GG+P + Q   LE 
Sbjct: 64  LDVSLFRVQ---TLVMCPTRELAEQVAGELRRIARFKHNIKITTLCGGMPIKPQLASLEH 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            A +++ TPGRI  H  R  L ++++  LV+DEADRMLD+GF   +  I S +P  RQTL
Sbjct: 121 QAHIVVGTPGRIEQHLKRESLNLDHVTTLVLDEADRMLDIGFADTLDAIISYLPRRRQTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  DE+ ++SE F    +R+ V+         +  F     ++ KK A++ ++L +
Sbjct: 181 LFSATFPDEILRLSEQFQYKAQRVIVDVEHEENSIQQEFF---ECKWDKKAAIVSRILAT 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ +IFCN K N  ++  +LE +GFS  AIHG++DQR R ++L  F  G+  +MVA
Sbjct: 238 HKP-ESTLIFCNTKANCRDIAEALEAKGFSALAIHGDLDQRERTEVLVRFSNGSSPIMVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N D+P  +E YIHRIGRTGRAG+ G AF+L+   +   ++ I 
Sbjct: 297 TDVAARGLDINGLSAVINVDLPFESEVYIHRIGRTGRAGKEGLAFSLMEPGEEFRLEEIN 356

Query: 362 KLIEKKVDWLNGDLSSLNP 380
           +L+    D+   D+ +L P
Sbjct: 357 RLM--GTDFKISDVEALAP 373


>gi|315125230|ref|YP_004067233.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas sp. SM9913]
 gi|315013743|gb|ADT67081.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas sp. SM9913]
          Length = 420

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 144/397 (36%), Positives = 235/397 (59%), Gaps = 10/397 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F+D  ++P+VV  + ++G+   TPIQ K +P + +  D+ G AQTGTGKT +F+      
Sbjct: 6   FSDFAIAPEVVAGLTESGFEYCTPIQAKCLPFICEGRDIAGQAQTGTGKTLAFLTATCHR 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  +A  + PR LI+ PTRELA Q+  + +    + NL + L+ GG  +E Q  +LE+
Sbjct: 66  LLQSSKAPSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGEDYEKQRAQLEK 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQ 179
           G D+LI T GR++D + +G   +N IE++V+DEADRM D+GFI  I+ +   +P T  R 
Sbjct: 126 GVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMFRRMPDTSERL 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++  +Q+++   + NP+ +++     T + I+      +     K  LL  L+
Sbjct: 186 NLLFSATLSYRVQELAFEHMTNPEHVQIEPDVKTGKRIQEELF--HPSQEDKIKLLLTLI 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++  +  I+F N K +   +   L+  G  V  + G+++Q+ R  IL+ F +G +  +
Sbjct: 244 E-EEWPEKAIVFANTKHSCETVYAWLKADGHRVGMLTGDVNQKKRQSILAQFSKGELDFL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGL IP+V HVFNFD+P+  E+Y+HRIGRT RAG  G A +   ++   ++  
Sbjct: 303 VATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTARAGASGHAISFACEQYAYNLHE 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
           IE+ IE  +   + D S+L   L K  I    H ++N
Sbjct: 363 IEEYIEHSIPLSHYDKSALLDDLTKPTI----HRKRN 395


>gi|229526685|ref|ZP_04416089.1| cold-shock DEAD-box protein A [Vibrio cholerae bv. albensis VL426]
 gi|229336843|gb|EEO01861.1| cold-shock DEAD-box protein A [Vibrio cholerae bv. albensis VL426]
          Length = 651

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 221/370 (59%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 16  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 75

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N   L V  + GG     Q + L
Sbjct: 76  NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 132

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 133 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 192

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL++P+ ++V   + T   +E  +        +K   + +LL
Sbjct: 193 RVLFSATMPPMVKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 250

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 251 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HV+N+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 310 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 369

Query: 360 IEKLIEKKVD 369
           IE++    ++
Sbjct: 370 IERVTRSSME 379


>gi|60679730|ref|YP_209874.1| putative RNA helicase dead-box protein [Bacteroides fragilis NCTC
           9343]
 gi|253564478|ref|ZP_04841935.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5]
 gi|265764859|ref|ZP_06093134.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16]
 gi|60491164|emb|CAH05912.1| putative RNA helicase dead-box protein [Bacteroides fragilis NCTC
           9343]
 gi|251948254|gb|EES88536.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5]
 gi|263254243|gb|EEZ25677.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16]
 gi|301161192|emb|CBW20730.1| putative RNA helicase dead-box protein [Bacteroides fragilis 638R]
          Length = 647

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 138/367 (37%), Positives = 226/367 (61%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++ 
Sbjct: 15  FEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI- 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
             +K   + R+P++L+L PTREL  Q+A +   Y K  + L V  + GG   ++Q + L+
Sbjct: 74  --QKINVKNRIPQSLVLCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 131

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  + +  +  +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 132 RGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTDSINAILADVPQERNT 191

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+ ++S+N+L N K I +   + +   ++H     +A+   K A L++++ 
Sbjct: 192 LLFSATMSPEIARISKNYLHNAKEITIGRKNESTSNVKHVVYTVHAK--DKYAALKRIVD 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   IQ++V
Sbjct: 250 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNIQILV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 309 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 368

Query: 361 EKLIEKK 367
           E++I KK
Sbjct: 369 ERIIGKK 375


>gi|228952820|ref|ZP_04114890.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228806863|gb|EEM53412.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 458

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 143/364 (39%), Positives = 224/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ + IP+++   D+ G A+TGTGKT +FVLP   
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLP--- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
           ILEK  +     + LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 63  ILEKIDSESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K  V  L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKLRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|187933940|ref|YP_001887642.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722093|gb|ACD23314.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
           Eklund 17B]
          Length = 526

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 147/368 (39%), Positives = 222/368 (60%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   VV A+ D G+  P+ IQ ++IP+ L+  D+ G AQTGTGKTA++  P+L+ 
Sbjct: 6   FYSLGLKDTVVKAIDDLGFNTPSQIQEESIPVTLEGFDLIGQAQTGTGKTAAYGCPILSR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER- 121
           L          + LIL PTRELA QV D  +K  K     V  + GG   + Q + L R 
Sbjct: 66  LNDTNG----IKALILAPTRELAVQVNDELKKLSKYEKANVLPVYGGESIDRQIRALRRD 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+LD  NR  L +N ++ LV+DEAD ML+MGFI  I+ I S  P  RQTL
Sbjct: 122 NIDIVVGTPGRVLDLINRKILKLNTVDFLVLDEADEMLNMGFIEDIETIISNTPAERQTL 181

Query: 182 LFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSATM   + K+++N+++ + K + +   S T   IE  +     ++  +   L +LL 
Sbjct: 182 LFSATMPAPIAKLAKNYMKADAKHVAIKRSSLTVSKIEQNYFMINNKH--RLEALCRLLD 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D   + IIFC  KK V  L   L+ +G+ V  +HG++ Q  R+  L  FKEG++ L++
Sbjct: 240 -LDNPSSAIIFCRTKKGVDELVEELQGKGYVVEGMHGDMSQVHRLTTLKKFKEGSLNLLI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+D+P   E+Y+HRIGRTGRA R G A++LV+ +++  +  I
Sbjct: 299 ATDVAARGIDVDGITHVINYDLPQDVESYVHRIGRTGRANRTGTAYSLVSPKELGMLKQI 358

Query: 361 EKLIEKKV 368
           +++ +  +
Sbjct: 359 QRVTKSTI 366


>gi|186476125|ref|YP_001857595.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184192584|gb|ACC70549.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 556

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 145/389 (37%), Positives = 223/389 (57%), Gaps = 33/389 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS ++V A+  AGY  PTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 37  FAELGLSAEIVSALTAAGYKSPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 96

Query: 63  LEK------------------GRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYN 100
             +                  GR R    V  P  L+L PTRELA QV      YGK+  
Sbjct: 97  FAQLQKVQASQPREPRDNNAGGRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLR 156

Query: 101 -LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159
            L    ++GG+ +  Q   L +  ++L+ TPGR++DH  RG++ ++ +++LV+DEADRML
Sbjct: 157 RLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQMLVLDEADRML 216

Query: 160 DMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV----NTPSSTAE 215
           DMGFI  I  I +  P +RQT+LFSAT+  ++  ++   L+ P+RIE+       ++ A+
Sbjct: 217 DMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTGRLLKEPERIEIKQHIEQRTNIAQ 276

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
           T+ +           K  LL  LL+    +   I+F   K +   L   L   GF   A+
Sbjct: 277 TVHYV-----DDRDHKDRLLDHLLRDSG-LDQAIVFTATKSDADMLAGRLADAGFESAAL 330

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGR
Sbjct: 331 HGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGR 390

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           TGRAGR G A +LV   +   +  IE+ +
Sbjct: 391 TGRAGRSGTAVSLVHHAEQGALKRIERFV 419


>gi|229514239|ref|ZP_04403700.1| cold-shock DEAD-box protein A [Vibrio cholerae TMA 21]
 gi|229522353|ref|ZP_04411769.1| cold-shock DEAD-box protein A [Vibrio cholerae TM 11079-80]
 gi|229528334|ref|ZP_04417725.1| cold-shock DEAD-box protein A [Vibrio cholerae 12129(1)]
 gi|229334696|gb|EEO00182.1| cold-shock DEAD-box protein A [Vibrio cholerae 12129(1)]
 gi|229340338|gb|EEO05344.1| cold-shock DEAD-box protein A [Vibrio cholerae TM 11079-80]
 gi|229348219|gb|EEO13177.1| cold-shock DEAD-box protein A [Vibrio cholerae TMA 21]
          Length = 653

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 221/370 (59%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 16  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 75

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N   L V  + GG     Q + L
Sbjct: 76  NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 132

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 133 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 192

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL++P+ ++V   + T   +E  +        +K   + +LL
Sbjct: 193 RVLFSATMPPMVKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 250

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 251 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HV+N+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 310 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 369

Query: 360 IEKLIEKKVD 369
           IE++    ++
Sbjct: 370 IERVTRSSME 379


>gi|162447297|ref|YP_001620429.1| DEAD box ATP-dependent RNA helicase [Acholeplasma laidlawii PG-8A]
 gi|161985404|gb|ABX81053.1| DEAD box ATP-dependent RNA helicase [Acholeplasma laidlawii PG-8A]
          Length = 547

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 143/349 (40%), Positives = 214/349 (61%), Gaps = 7/349 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +      A+   G+ + TPIQ + IP ++   D+ G AQTGTGKT +F +PM+  
Sbjct: 5   FNDLPILDTTKVALEKLGFTEATPIQEQAIPKMILGLDLIGQAQTGTGKTFAFGIPMV-- 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
            EK    +R  + LIL PTREL  QV     K  K Y  L V  ++GG  +E Q K+L+R
Sbjct: 63  -EKTDTSLRQTQGLILTPTRELTNQVYKEIIKLVKFYPELRVTTIVGGESYEKQFKELDR 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI+DH +RG + +++I  L +DEAD ML MGF   I+ I    P TRQT+
Sbjct: 122 KPHIIVATPGRIIDHIDRGTVDLSHITTLTLDEADEMLKMGFQDDIERILQTTPETRQTV 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K+++N+ +NP+ I++   S T + I   +     +  +K +LL++LL  
Sbjct: 182 LFSATMPAFIKKIAKNYQKNPELIKIEAKSLTVDRITQAYF--LVKEKEKQSLLERLLDF 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++     IIF N K     +  SL+K GF+  A+HG++ Q  R  +++ F+   + ++VA
Sbjct: 240 ENP-STAIIFVNTKAGADRITESLQKAGFTADALHGDLKQSQRTYVMNRFRSKQLSILVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           +D+AARGLD+ DV  + N+D+P + E Y+HRIGRTGRAG+ GKAFT V 
Sbjct: 299 TDVAARGLDVDDVEIIVNYDLPQQDEIYVHRIGRTGRAGKKGKAFTFVT 347


>gi|116072449|ref|ZP_01469716.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
 gi|116064971|gb|EAU70730.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
          Length = 607

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 140/371 (37%), Positives = 217/371 (58%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G S  ++  + + GY  P+PIQ    P ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 59  FDGFGFSEALLKTLAEKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 118

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           LE GR   + P+ L+L PTRELA QVAD+F+ Y   + +L V  + GG  F +Q   L R
Sbjct: 119 LESGR---KTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRR 175

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR++DH  +G L  + +  LV+DEAD ML MGFI  ++ I   +P  RQ +
Sbjct: 176 GVDVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVV 235

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++S+ +L +P  + + T     + I     A     S K   LQ++L +
Sbjct: 236 LFSATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKLIRQR--AITVPMSHKLEALQRVLDA 293

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  IIF   K   + +  +LE  G  V  ++G++ Q  R + +   + G++ ++VA
Sbjct: 294 CGG-EGVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDILVA 352

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N+D+P  +E Y+HRIGRTGRAGR G+A   +   + + I  +E
Sbjct: 353 TDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRERRFIRNLE 412

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 413 RATGQPIELME 423


>gi|86145756|ref|ZP_01064085.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222]
 gi|85836455|gb|EAQ54584.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222]
          Length = 665

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 220/370 (59%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L L+  ++ A+   G+V PTPIQ   IPL+L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             +   + +   P+ +I+ PTRELA QVA   +  G++   L V  + GG     Q + L
Sbjct: 66  NKINLNQHK---PQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR+ D   R +L ++     V+DEAD ML MGF+  +  I    P + Q
Sbjct: 123 SRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++ + + +L+NP +++V   + T + +   +        +K   + +LL
Sbjct: 183 RVLFSATMPPMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQNYWVVKG--VEKDEAMSRLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVD 369
           IE++ + +++
Sbjct: 360 IERVTKSQME 369


>gi|310829374|ref|YP_003961731.1| hypothetical protein ELI_3819 [Eubacterium limosum KIST612]
 gi|308741108|gb|ADO38768.1| hypothetical protein ELI_3819 [Eubacterium limosum KIST612]
          Length = 547

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 143/354 (40%), Positives = 220/354 (62%), Gaps = 7/354 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L ++ +++ A+ D G+V  T IQ + IP +++  D+ G +QTGTGKT +F +P +
Sbjct: 1   MKFRELEINEQLLRAIDDMGFVDMTEIQERAIPRLMEGGDLIGKSQTGTGKTMAFAIPAI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
              EK    +R P+ L+L PTRELA QV++ F K  K ++++ V  + GG   E Q + L
Sbjct: 61  ---EKIDPELRKPQVLVLLPTRELALQVSEEFRKVLKYSHSIKVVAVFGGASIENQIRDL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR++DH  R  L  N + + V+DEAD ML+MGF   I+ I   V    Q
Sbjct: 118 KSGAQIVVGTPGRVMDHMRRKTLKFNALTMAVLDEADEMLNMGFREDIELILDAVDHDVQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + K++E + +NP  IE++  +  A +IE  +     Q   K   L +LL
Sbjct: 178 TVLFSATMPKPILKIAETYQKNPTMIEISPKTMVAPSIEQKYFNISDQ--NKFEALTRLL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 ++ +IFCN K  V  +  +L++ G+SV  IHG++ Q SR+ +L  F +G ++++
Sbjct: 236 DVYKPQRS-LIFCNTKHYVDEITENLQELGYSVDKIHGDMRQVSRLNVLKRFSQGRLKIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+AARG+D+ DV  VFN+DVP+  E Y+HRIGRTGRAG+ G + TL    D
Sbjct: 295 VATDVAARGIDVDDVDIVFNYDVPDNEEYYVHRIGRTGRAGKSGLSLTLARSRD 348


>gi|254226977|ref|ZP_04920540.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V51]
 gi|125620490|gb|EAZ48861.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V51]
          Length = 576

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 221/370 (59%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 26  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N   L V  + GG     Q + L
Sbjct: 86  NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 142

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 143 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 202

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL++P+ ++V   + T   +E  +        +K   + +LL
Sbjct: 203 RVLFSATMPPMVKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++T    I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 261 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HV+N+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 320 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 379

Query: 360 IEKLIEKKVD 369
           IE++    ++
Sbjct: 380 IERVTRSSME 389


>gi|78184980|ref|YP_377415.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
 gi|78169274|gb|ABB26371.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
          Length = 624

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 140/371 (37%), Positives = 217/371 (58%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G S  ++  + D GY  P+PIQ    P ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 73  FDGFGFSEALLKTLADKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 132

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           LE G+   + P+ L+L PTRELA QVAD+F+ Y   + +L V  + GG  F +Q   L R
Sbjct: 133 LESGQ---KTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRR 189

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR++DH  +G L  + +  LV+DEAD ML MGFI  ++ I   +P  RQ +
Sbjct: 190 GVDVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVV 249

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++S+ +L +P  + + T     + I     A     S K   LQ++L +
Sbjct: 250 LFSATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKLIRQR--AITVPMSHKLEALQRVLDA 307

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  IIF   K   + +  +LE  G  V  ++G++ Q  R + +   + G++ ++VA
Sbjct: 308 CGG-EGVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDVLVA 366

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N+D+P  +E Y+HRIGRTGRAGR G+A   +   + + I  +E
Sbjct: 367 TDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRERRFIRNLE 426

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 427 RATGQPIEMME 437


>gi|218897409|ref|YP_002445820.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|228901054|ref|ZP_04065263.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 4222]
 gi|228965436|ref|ZP_04126523.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|218541264|gb|ACK93658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|228794267|gb|EEM41784.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228858570|gb|EEN03021.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 4222]
          Length = 450

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 144/364 (39%), Positives = 222/364 (60%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP   
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLP--- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
           ILEK        + LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 63  ILEKINPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|118475108|ref|YP_891966.1| putative ATP-dependent RNA helicase RhlE [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118414334|gb|ABK82754.1| putative ATP-dependent RNA helicase RhlE [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 624

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 149/370 (40%), Positives = 216/370 (58%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+D  LS  ++ A+ +  Y  PT IQ   IP ++Q  D+   A+TGTGKTA+F LP+L
Sbjct: 1   MLFSDFDLSSAILEALKELNYDAPTQIQQVAIPAIMQGKDILAGARTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRT--LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L       + P+T  L+L PTRELA QV  N + Y K        + GG+    Q + 
Sbjct: 61  EKLSSKERNKKRPQTRVLVLVPTRELANQVTQNIKSYAKKLPFKTLPVFGGVSSYPQIQA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+++ TPGR+LD   +  L + +I+ LV DEADRM DMGFI  I+ I  ++P  R
Sbjct: 121 LKSGIDIVVATPGRLLDLALQNALSLEHIDTLVFDEADRMFDMGFIHDIKQIVKMLPEKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT   E+  +  + L++P RI++   +STA  I    +       KK  LL ++
Sbjct: 181 QNLLFSATYPSEVMSLCNSMLKDPLRIQIEEQNSTALNIIQRVI--LVDRDKKMELLNEV 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               +++   ++F   K++       L   GFSV A+HG+  Q  R K L  FK G  ++
Sbjct: 239 F-GVESIDQALVFTRTKRSADKCSSYLHTLGFSVAALHGDKSQSVRSKTLEKFKNGKTKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI ++  V N ++PN  E+Y+HRIGRTGRAG  G A +LV  ++ K + 
Sbjct: 298 LVATDIAARGLDIKELPFVINLELPNVPEDYVHRIGRTGRAGNDGVAISLVCVDEFKFLI 357

Query: 359 AIEKLIEKKV 368
            IEKLI+KK+
Sbjct: 358 DIEKLIDKKL 367


>gi|228961717|ref|ZP_04123322.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228797966|gb|EEM44974.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 481

 Score =  267 bits (683), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 134/362 (37%), Positives = 221/362 (61%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++K+S  ++ +P  IE+     T + IEH          +K +LL+ +   +
Sbjct: 183 FSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIE--DEKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G    +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFFYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|319775896|ref|YP_004138384.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
 gi|317450487|emb|CBY86704.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
          Length = 613

 Score =  267 bits (683), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 228/369 (61%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L  
Sbjct: 7   FNNLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLLAQ 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121
           ++      + P+ L++ PTRELA QVAD  E + K    T +  L GG  ++ Q + L++
Sbjct: 67  IDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   QT 
Sbjct: 124 GAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240
           LFSATM + ++++++ F+ +P+ +++   +  A  I+  C+   Y    +K   L + L+
Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIF   K   +++   LEK GF   A++G++ Q+ R + L   +  ++ ++V
Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNRSLDIVV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 361 EKLIEKKVD 369
           E L++K ++
Sbjct: 360 EHLMKKGIN 368


>gi|229099881|ref|ZP_04230804.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-29]
 gi|228683496|gb|EEL37451.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-29]
          Length = 481

 Score =  267 bits (683), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 132/363 (36%), Positives = 223/363 (61%), Gaps = 6/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++  LS +++ A+   GY  PT +Q + IP+ L++ D+   +QTG+GKTASF +P+  
Sbjct: 5   EFSNYALSKEIIRALTGLGYEHPTEVQGEVIPVALKKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++K+S  ++ +P  IE+     T + IEH    T  +  +K +LL+ +   
Sbjct: 182 LFSATLPEDVEKLSRTYMDSPTHIEIKAAGITTDKIEHTLFETREE--EKLSLLKDVTTI 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++   + IIFC  ++NV ++   L +  +    IHG + Q  R +++ +F++G  + +VA
Sbjct: 240 ENP-DSCIIFCRTQENVDHVFRQLNRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNKGKAITFITPYENRFLEEIE 358

Query: 362 KLI 364
             I
Sbjct: 359 AYI 361


>gi|218190304|gb|EEC72731.1| hypothetical protein OsI_06346 [Oryza sativa Indica Group]
          Length = 1382

 Score =  267 bits (683), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 138/369 (37%), Positives = 222/369 (60%), Gaps = 8/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G  P+++  +  AG++ PTPIQ +T P+ LQ  D+  IA+TG+GKT  +++P  
Sbjct: 603 MTFEATGFPPEILQEIHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTLGYLIPAF 662

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L + +    + P  L+L PTRELA+Q+ D   K+G++  ++   L GG     Q ++L
Sbjct: 663 IHLRRYQNNPMLGPTVLVLAPTRELASQIQDEAVKFGRSSRVSCTCLYGGTSKGLQLREL 722

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGAD+++ TPGR+ D     K+ ++ +  LV+DEADRMLDMGF P I+ I   +P  RQ
Sbjct: 723 ERGADIVVATPGRLNDILEMRKISLHQVSFLVLDEADRMLDMGFEPQIRKIVDEIPRNRQ 782

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK---KCALLQ 236
           TL+++AT   E+ K++ + L++P ++ +    S  E + +  +  Y +      K   L+
Sbjct: 783 TLMYTATWPKEVTKIAGDLLKDPVQVNIG---SIDELVANKSITQYVEVVPPLDKQRRLE 839

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q+L++Q+     IIFC+ KK    L   + +  F   +IHG+  Q  R  +L+ F+ G  
Sbjct: 840 QILRAQERGSKVIIFCSTKKMCDQLARDIGRS-FGAASIHGDKSQAERDNVLNQFRTGRA 898

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G ++T  +++D K+
Sbjct: 899 PILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKY 958

Query: 357 IDAIEKLIE 365
              + K++E
Sbjct: 959 AGDLVKVLE 967


>gi|146294198|ref|YP_001184622.1| ATP-dependent RNA helicase DbpA [Shewanella putrefaciens CN-32]
 gi|145565888|gb|ABP76823.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 458

 Score =  267 bits (683), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 146/369 (39%), Positives = 223/369 (60%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P+++  +   GY + TPIQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 1   MAFSTLKLKPELLENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             L+  R R++   TL+L PTRELA QVA       +  +N+ V  L GG+P   Q   L
Sbjct: 61  NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH +R +L ++N+ +LV+DEADRML+MGF P +  I    P  RQ
Sbjct: 118 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +++Q +++  + +P  ++V     +    +H F       ++  AL  QLL
Sbjct: 178 TLLFSATFPEQIQSIAKQIMYDPSMVKVEGNHDSLSIAQH-FYHLDDDKARMQAL--QLL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ ++FCN K+    +   LE  GFSV A+HG+++QR R + L  F   +  ++
Sbjct: 235 LLEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  VFN+ V    E +IHRIGRTGRAG  G A+T    +D   I  
Sbjct: 295 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIAL 354

Query: 360 IEKLIEKKV 368
           +E+ +E+++
Sbjct: 355 LEEYLEREI 363


>gi|120597664|ref|YP_962238.1| ATP-dependent RNA helicase DbpA [Shewanella sp. W3-18-1]
 gi|120557757|gb|ABM23684.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 458

 Score =  267 bits (683), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 146/369 (39%), Positives = 223/369 (60%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P+++  +   GY + TPIQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 1   MAFSTLKLKPELLENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             L+  R R++   TL+L PTRELA QVA       +  +N+ V  L GG+P   Q   L
Sbjct: 61  NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH +R +L ++N+ +LV+DEADRML+MGF P +  I    P  RQ
Sbjct: 118 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +++Q +++  + +P  ++V     +    +H F       ++  AL  QLL
Sbjct: 178 TLLFSATFPEQIQSIAKQIMYDPSMVKVEGNHDSLSIAQH-FYHLDDDKARMQAL--QLL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ ++FCN K+    +   LE  GFSV A+HG+++QR R + L  F   +  ++
Sbjct: 235 LLEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  VFN+ V    E +IHRIGRTGRAG  G A+T    +D   I  
Sbjct: 295 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIAL 354

Query: 360 IEKLIEKKV 368
           +E+ +E+++
Sbjct: 355 LEEYLEREI 363


>gi|237716826|ref|ZP_04547307.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262405596|ref|ZP_06082146.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644524|ref|ZP_06722278.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC
           2a]
 gi|294805785|ref|ZP_06764662.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229442809|gb|EEO48600.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262356471|gb|EEZ05561.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640077|gb|EFF58341.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC
           2a]
 gi|294447006|gb|EFG15596.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 643

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 141/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP+L 
Sbjct: 4   FEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            ++    + R+P++LIL PTREL  Q+A +   Y K  + L V  + GG   ++Q + L+
Sbjct: 64  QID---VKNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  + ++ I  +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTDSINAILADVPQERNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+ ++S+N+L+N K I +   + +   ++H  V    Q   K   L++++ 
Sbjct: 181 LLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKH--VVYTVQAKDKYEALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+V
Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRICNLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKLREI 357

Query: 361 EKLIEKKVDWLNGDLSS 377
           E++I KK  ++ G++ +
Sbjct: 358 ERIIGKK--FITGEMPT 372


>gi|93006300|ref|YP_580737.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5]
 gi|92393978|gb|ABE75253.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5]
          Length = 384

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 145/375 (38%), Positives = 231/375 (61%), Gaps = 15/375 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL LS   + AV D G+ + TPIQ K +P  L   D  G AQTGTGKTA+F+L ++  
Sbjct: 7   FTDLPLSAATLRAVSDLGFTELTPIQAKILPHTLANQDAIGQAQTGTGKTATFLLTIMEA 66

Query: 63  LEK------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           L K          +  PR +++ PTRELA Q+ D+     K  +L    ++GG  +E Q 
Sbjct: 67  LLKRPFAADEERHLGEPRAVVMAPTRELAQQIFDDCIALTKYTSLHSVCIMGGTNYETQQ 126

Query: 117 KKLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            +LER   D+LI TPGR++D  ++G + ++ +E+LV+DEADRMLDMGFIP I+ +   +P
Sbjct: 127 HELERQYVDILIATPGRLIDLMHKGMVYLDRVEVLVLDEADRMLDMGFIPDIKRLVGRMP 186

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKC 232
               RQ+LLFSAT   ++  ++  +L  P+ +E+     T+E + +H ++ T  Q   K 
Sbjct: 187 PNTDRQSLLFSATFNQDVMGLAYRWLHEPEFVEIEPEHKTSELVDQHFYLLTEDQ---KL 243

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             +++++ +  T++  IIF N+K  V  L H L +QG  +  + G++ Q+ R K L  FK
Sbjct: 244 EAVERII-TDSTVEKVIIFANRKDQVKRLYHKL-RQGHKIVMLSGDVIQQKREKYLQRFK 301

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +G   ++VA+D+A RG+ + DV HV N+ +P++ ++Y+HRIGRTGRAG+ G + + V+++
Sbjct: 302 DGHASVLVATDVAGRGIHVDDVSHVINYTLPDQPDDYVHRIGRTGRAGQTGISISFVSED 361

Query: 353 DIKHIDAIEKLIEKK 367
           D  +I A+EK ++ K
Sbjct: 362 DAFNIPALEKHLDTK 376


>gi|282859050|ref|ZP_06268186.1| putative ATP-dependent RNA helicase DeaD [Prevotella bivia
           JCVIHMP010]
 gi|282588218|gb|EFB93387.1| putative ATP-dependent RNA helicase DeaD [Prevotella bivia
           JCVIHMP010]
          Length = 625

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 231/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+  ++  A+ + G+  P P+Q + IP +L  R+DV  +AQTGTGKTA+F LP+L 
Sbjct: 4   FEELGVCEEIRKAIEEQGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++      +  + ++L PTREL  Q+AD+ + +GK   +L +A + GG   E Q K+L+
Sbjct: 64  RID---TTTKETQAIVLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGTSIETQIKELK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++D  +RGK  + N+  +V+DEAD ML+MGF   I  I S VP  R T
Sbjct: 121 RGVQIIVATPGRLIDLMHRGKAKLENVRNMVLDEADEMLNMGFQESITEILSGVPEDRNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+++V++ +L + K I V + +  AE + H +    A+   K   L++L+ 
Sbjct: 181 LLFSATMSREVERVAKGYLHDYKEIVVGSRNEGAENVNHIYYMVNAK--DKYLALKRLVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   IIFC  K     +   L K G++  A+HG++ Q+ R   +  F+    Q++V
Sbjct: 239 FYPKI-YAIIFCRTKLETQEVADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHLTQILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++ HV N+ +P+  ENY HR GRTGRAG+ G + +++   +   +  I
Sbjct: 298 ATDVAARGLDVTELTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKYKVRNI 357

Query: 361 EKLIEKKVDWLNGDLSS 377
           E++I K  ++++G L S
Sbjct: 358 ERVISK--EFIDGTLPS 372


>gi|257064977|ref|YP_003144649.1| DNA/RNA helicase, superfamily II [Slackia heliotrinireducens DSM
           20476]
 gi|256792630|gb|ACV23300.1| DNA/RNA helicase, superfamily II [Slackia heliotrinireducens DSM
           20476]
          Length = 657

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 145/366 (39%), Positives = 215/366 (58%), Gaps = 4/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + GLS   + AV D GY +PTPIQ + IP+VL+  D+   A+TGTGKTA+F LP +  
Sbjct: 9   FDESGLSATALAAVYDLGYEEPTPIQQQAIPVVLEGRDLIAAAKTGTGKTAAFALPTMDK 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +   P  +I+ PTRELA Q+++  E   K  N  V  L+GG+ +  Q KKL  G
Sbjct: 69  LPYA-GKGEGPVMVIVTPTRELAMQISEVCETIAKRTNHRVVTLLGGVSYTPQIKKLRSG 127

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR+LD   + +  ++ +++LV+DEADRMLDMGF P +  I    P  RQTLL
Sbjct: 128 CDIIIATPGRLLDLMRQHEADLDLVQVLVLDEADRMLDMGFWPQVSEIVDATPSERQTLL 187

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+     KV  + L +P+ IE++    TA+ ++   + T  +  +K ALL   ++ +
Sbjct: 188 FSATIDRSQDKVMFSLLNHPEIIEISHRGDTADLVDQYIIWTGRR--EKPALLNAFIREK 245

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+F   K    N    L K G    AIH +  Q  R + L  F+EG   ++VA+
Sbjct: 246 GGFRV-IVFTKTKGGADNCTRRLCKIGIGAEAIHADRSQAQRQRALERFREGKTHVIVAT 304

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ ARG+D+P+V +V N+D+P   E+Y+HRIGRTGRAG  G A + V  +    + +I+K
Sbjct: 305 DVLARGIDVPEVDYVVNYDLPMMPEDYVHRIGRTGRAGVAGYAVSFVTPDTKNLLRSIQK 364

Query: 363 LIEKKV 368
            I + +
Sbjct: 365 FIGEDI 370


>gi|119477463|ref|ZP_01617654.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143]
 gi|119449389|gb|EAW30628.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143]
          Length = 457

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 151/388 (38%), Positives = 223/388 (57%), Gaps = 17/388 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L  +++  + D G+   +PIQ  T+P  +Q HD  G AQTGTGKTA+F++ ++  
Sbjct: 77  FHDLSLDDRLMHGIADLGFEYCSPIQAGTLPQTMQGHDAIGKAQTGTGKTAAFLITIIND 136

Query: 63  LE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 K       PR LI+ PTREL  Q+ ++ +   K   L VA LIGG+ ++ Q ++
Sbjct: 137 FLANPIKEERYAGEPRALIIAPTRELVVQIGEDAKSLNKYTGLKVATLIGGMDYQKQLQQ 196

Query: 119 LERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           L R   D+++ TPGR+LD  +RG L ++ IEILVIDEADRMLDMGFIP ++ I    P  
Sbjct: 197 LSRELVDIVVATPGRLLDFQSRGDLYLDQIEILVIDEADRMLDMGFIPQVRRIVRSTPRK 256

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +RQTLLFSAT T E+  ++E +   P  +E+   S   +T++       A   +K ALL
Sbjct: 257 ESRQTLLFSATFTPEVLSLTEQWTFEPFSLEIEPDSVATDTVDQKVYIVAA--DQKFALL 314

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + ++Q  D  K+ I+F N++     L   L K G     + G I Q  R + L  FK+G 
Sbjct: 315 RNIVQLPDA-KSIIVFANRRDQTRKLYERLRKAGIRCGILSGEIPQNKRSQTLQRFKDGD 373

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+A RG+ +  V HV N+ +P   E+Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 374 LQVLVATDVAGRGIHVDGVSHVINYTLPEDPEDYVHRIGRTGRAGATGTSISFACEDDSF 433

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
            +  +E+L+  K       LS   PP E
Sbjct: 434 LLAPLEELLGSK-------LSCTQPPEE 454


>gi|300113218|ref|YP_003759793.1| DEAD/DEAH box helicase domain-containing protein [Nitrosococcus
           watsonii C-113]
 gi|299539155|gb|ADJ27472.1| DEAD/DEAH box helicase domain protein [Nitrosococcus watsonii
           C-113]
          Length = 500

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 141/363 (38%), Positives = 214/363 (58%), Gaps = 7/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F    +S  ++ A+   GY  PT IQ + IP +L  HD+ G AQTGTGKTA+F +P L
Sbjct: 8   LSFDSFAISAPILQAIKQVGYETPTLIQARAIPHLLAGHDLVGQAQTGTGKTAAFAIPTL 67

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             LE  R   R P+ L+L PTRELA QVA+ F+ Y ++  +  V  + GG     Q ++L
Sbjct: 68  ERLELSR---REPQALVLVPTRELAIQVAEAFQSYARHLEDFHVLPIYGGQSMGNQLRQL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA V++ TPGRI+DH  R  L++  +  +++DEAD ML MGFI  ++ I   VP  RQ
Sbjct: 125 KRGAHVIVGTPGRIMDHLRRKSLILTTLTTVILDEADEMLKMGFIEDVEWILKQVPTKRQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   ++ ++   L  P+ I++   +++   I   +      +  K   L ++L
Sbjct: 185 VALFSATMPTSVRNIASRHLHAPQDIKIKGKTASLPAINQRYWLVSGLH--KLDALTRML 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++     IIF   K     L   L  +G++  A++G++ Q SR K++   K+ TI ++
Sbjct: 243 EAEE-YDATIIFVRTKIATEELAKKLTARGYAAAALNGDMPQSSREKVVDQLKKNTIDII 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +GHV N+D+P     YIHRIGRTGRAGR G A   VA  + + + A
Sbjct: 302 VATDVAARGLDVKRIGHVVNYDIPYDTGTYIHRIGRTGRAGRTGTATLFVAPRERRMLSA 361

Query: 360 IEK 362
           I++
Sbjct: 362 IKR 364


>gi|113969089|ref|YP_732882.1| ATP-dependent RNA helicase DbpA [Shewanella sp. MR-4]
 gi|113883773|gb|ABI37825.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 458

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 220/369 (59%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P+++  +   GY + TPIQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 1   MAFSTLKLKPELLENLTTMGYYEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             L+  R R++   TL+L PTRELA QVA       +  +N+ V  L GG+P   Q   L
Sbjct: 61  NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH  R +L ++N+ +LV+DEADRML+MGF P +  I    P  RQ
Sbjct: 118 EHGAHIIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +++Q +++  + +P  ++V   +    TIE  F       ++  AL  QLL
Sbjct: 178 TLLFSATFPEQIQSIAKQIMYDPVMVKVAV-THEKSTIEQHFYHLDDDKARMQAL--QLL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 ++ ++FCN K+    +   L   GFSV A+HG+++QR R + L  F   +  ++
Sbjct: 235 LLDRKPESAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  VFN+ V    E +IHRIGRTGRAG  G AFT    +D   I  
Sbjct: 295 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAFTFFNDQDGYKIAL 354

Query: 360 IEKLIEKKV 368
           +E+ +E+ +
Sbjct: 355 LEEYLERDI 363


>gi|332827587|gb|EGK00333.1| hypothetical protein HMPREF9455_03472 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 611

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 224/369 (60%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG++  +  A+ + GY  P P+Q + IP +L +  D+  +AQTGTGKTA+F LP+L 
Sbjct: 4   FEELGVAANIRKAIEEMGYENPMPVQEEVIPYLLGETSDIIALAQTGTGKTAAFGLPVLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            +E    +  +P+ LIL PTREL  Q+A +   Y K   NL V  + GG   E+Q K L+
Sbjct: 64  KIE---VKENVPQALILCPTRELCLQIAGDLADYSKYIDNLRVLPVYGGSSIESQIKSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++D  NR  + + NI+ +V+DEAD ML+MGF   I  I S VP  R  
Sbjct: 121 RGVQIIVATPGRLIDLINRKTVDLKNIKYVVLDEADEMLNMGFTESIDEILSKVPDERVM 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+ K+++ ++Q+PK I +   +  +  ++H +   +A+   K   L+++  
Sbjct: 181 LLFSATMPKEIAKITKKYMQSPKEITIGRKNEGSNNVKHVYYMVHAK--DKYLALKRIAD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  ++    +   L + G++  ++HG++ Q  R  ++  F+   IQL+V
Sbjct: 239 YYPNI-YGIIFCRTRRETQEIADKLIQDGYNADSLHGDLSQAQRDYVMQKFRIHNIQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+ +P+  E+Y HR GRTGRAG+ G + ++V  ++   I  I
Sbjct: 298 ATDVAARGLDVDSLTHVINYGLPDDIESYTHRSGRTGRAGKTGTSISIVHVKEKGKIREI 357

Query: 361 EKLIEKKVD 369
           EK+I KK +
Sbjct: 358 EKIINKKFE 366


>gi|330999043|ref|ZP_08322768.1| cold-shock DEAD-box protein A [Parasutterella excrementihominis YIT
           11859]
 gi|329575785|gb|EGG57311.1| cold-shock DEAD-box protein A [Parasutterella excrementihominis YIT
           11859]
          Length = 586

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 145/377 (38%), Positives = 223/377 (59%), Gaps = 15/377 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS K+V ++   G+ +PTPIQ K IP++L+  DV G A TGTGKTA+F LP++  
Sbjct: 6   FLELGLSEKLVNSLSSLGFEEPTPIQTKAIPVLLEGRDVLGQAATGTGKTAAFSLPLIQR 65

Query: 63  L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                E G+     P+ LIL PTREL  QV++    + ++  + V  + GG  +  Q K 
Sbjct: 66  YCLDTEPGK-----PQVLILTPTRELCIQVSEAINSFARSSGVYVLPVYGGQDYSRQIKA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG  +++ TPGR LDH  RG L +  I+ +V+DEAD MLDMGF   ++ I + +P  R
Sbjct: 121 LSRGVQIVVATPGRALDHIRRGTLNLTEIKAVVLDEADEMLDMGFAEDLEAIFAALPEKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKKCALL 235
           QT LFSAT+  ++ K++EN L +   I +     P      ++    A     + K A L
Sbjct: 181 QTALFSATLPPKIAKIAENHLHDAFHILIPKEKVPEGEQPKVKQS--AYIVGRNHKTAAL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            ++L  + + +  I+F   +  V  L  SL  +G+SV  +HG +DQ  R +++   +   
Sbjct: 239 GRILDIE-SPRLAIVFARTRNEVDELAESLRGRGYSVEPLHGGLDQAQRDRVMKRARAEQ 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARG+DI  + HV NF +P+ AE Y+HRIGRTGRAGR G A T++   + +
Sbjct: 298 VDVIVATDVAARGIDIDHLTHVINFGIPSSAETYVHRIGRTGRAGREGTAITILEPRESR 357

Query: 356 HIDAIEKLIEKKVDWLN 372
            +  IE+L ++K+  L+
Sbjct: 358 LLKNIERLTKRKITLLS 374


>gi|229173149|ref|ZP_04300699.1| ATP-dependent RNA helicase [Bacillus cereus MM3]
 gi|228610326|gb|EEK67598.1| ATP-dependent RNA helicase [Bacillus cereus MM3]
          Length = 446

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 143/364 (39%), Positives = 223/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP   
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLP--- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
           ILEK   +    + LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 63  ILEKIDPKSSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|109898646|ref|YP_661901.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c]
 gi|109700927|gb|ABG40847.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 426

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 224/370 (60%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+ L L+P++  A+   GY K TPIQ + I +  +  DV   AQTGTGKTA+F +P+L
Sbjct: 1   MNFSSLDLAPELQQAIDACGYKKMTPIQQQAIVVARRGRDVLASAQTGTGKTAAFAVPIL 60

Query: 61  T-ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +L K +      PR LIL PTRELA Q+A N   Y K  +++V  L GG+    Q  K
Sbjct: 61  QQMLNKPKKTTPGTPRALILTPTRELAEQLATNIANYAKFTDISVTALYGGVKLGGQASK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D++I TPGR+L+H     + + N+E +V+DEADRMLDMGFI  ++ + + +    
Sbjct: 121 LSAGVDIVISTPGRLLEHMTLKNVELANVEFVVLDEADRMLDMGFIADVRQMLAQITSAH 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT++  + +++   L+N + I     +S A+T++H       +   K  L + L
Sbjct: 181 QTLLFSATISPTVNELAHKLLKNHQEIRATQLNSAADTVQHVMYPVSEE--DKIRLFKTL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  Q+  +  ++F + K+    L  +L+         H +  Q +R + +++FK   +Q+
Sbjct: 239 LAEQNWYQV-LVFTSTKEQADKLMAALKTSKIDAAVCHADKSQGARRRAIADFKSAKLQV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+++AARGLDI  + +V N+++P   E+Y+HRIGRTGRAG+ G A + V++E+ + ++
Sbjct: 298 LIATEVAARGLDIQGLDYVVNYNLPYLPEDYVHRIGRTGRAGQQGNAISFVSREEERTVE 357

Query: 359 AIEKLIEKKV 368
            IE+LI  K+
Sbjct: 358 RIERLINGKI 367


>gi|229190613|ref|ZP_04317610.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 10876]
 gi|228592958|gb|EEK50780.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 10876]
          Length = 458

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 66  KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFIM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|229184685|ref|ZP_04311885.1| ATP-dependent RNA helicase [Bacillus cereus BGSC 6E1]
 gi|228598789|gb|EEK56409.1| ATP-dependent RNA helicase [Bacillus cereus BGSC 6E1]
          Length = 447

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 3   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 63  KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356

Query: 361 EKLI 364
           EK +
Sbjct: 357 EKTL 360


>gi|281422527|ref|ZP_06253526.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
           DSM 18205]
 gi|281403351|gb|EFB34031.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
           DSM 18205]
          Length = 568

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 147/377 (38%), Positives = 233/377 (61%), Gaps = 12/377 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  +   TP+Q K IP +L+ HDV G+AQTGTGKTA+++LP+L
Sbjct: 1   MYFDELDLNDNVLDALYDMRFDTCTPVQEKCIPEILEGHDVLGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL----TVALLIG--GIPFEA 114
           + L+ G         +I+ PTRELA Q+    + +G  Y L    +VA+  G  G  ++ 
Sbjct: 61  SKLDDGGYPKDAINCVIMSPTRELAQQIDQAMQGFG--YYLQGVSSVAVYGGNDGNRYDQ 118

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           + + L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I+ I S +
Sbjct: 119 ELRSLRMGADVVIATPGRLISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIKTIASKL 178

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P T QT++FSATM ++++++++  L+NP  I++   S  AE I+      Y   ++K  +
Sbjct: 179 PKTCQTIMFSATMPEKIEELAKTLLKNPVEIKLAV-SKPAEKIKQEAYVCYE--TQKMTI 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           ++ + ++ D +K  I+F   K  V  L  SL++ G +  A+H +++Q  R  ++  FK G
Sbjct: 236 IKDIFKAGD-LKRVIVFSGSKFKVKQLAASLQQIGVNCGAMHSDLEQAERDDVMFKFKSG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+ ARG+DI D+  V N+DVP+  E+Y+HRIGRT RA R G+A T V++ED 
Sbjct: 295 QYDVLVATDIVARGIDIDDIEMVINYDVPHDTEDYVHRIGRTARANRDGRAITFVSEEDQ 354

Query: 355 KHIDAIEKLIEKKVDWL 371
                IEK +EK VD +
Sbjct: 355 YWFQQIEKFLEKVVDKM 371


>gi|255530101|ref|YP_003090473.1| DEAD/DEAH box helicase domain-containing protein [Pedobacter
           heparinus DSM 2366]
 gi|255343085|gb|ACU02411.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 418

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 154/427 (36%), Positives = 240/427 (56%), Gaps = 15/427 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF D   +P+++  +L  G+   TPIQ + IPL+L + D+   AQTGTGKT +++LP++
Sbjct: 1   MDFKDFNFNPELLEGLLAMGFRNATPIQQQAIPLILNKKDLIACAQTGTGKTGAYLLPIM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
            ++ +   R     TLIL PTRELA Q+    E      N++   + GG   I +E Q +
Sbjct: 61  NMIVETENRHN--NTLILAPTRELAQQIDLQVEALSYFTNISSLTVYGGGDGIAYEQQKR 118

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +  G D++I TPGR++ H + G L ++ ++ LV+DEADRMLDMGF   I  I S +P  
Sbjct: 119 SMREGVDLIIATPGRLISHLSSGVLKLDQLQHLVLDEADRMLDMGFYDDIMRIVSYLPQV 178

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  +++K++   L++P++I +         ++  +   +    +K  LL  
Sbjct: 179 RQTVMFSATMPPKIRKLAATLLKHPEQINIALSKPAEGILQQIY---FVHDEQKVPLLTD 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L++ +  K+ IIF + K+ V NL       G    A H ++ Q  R  IL  FK   + 
Sbjct: 236 VLKTGE-YKSIIIFASTKEKVKNLGKVFRTLGLKAEAFHSDLGQSERESILLKFKNKQLP 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ +D+ +RG+D+  +  V NFDVP+ AE+Y+HRIGRT RA   G A TLV   D + +
Sbjct: 295 ILIGTDVLSRGIDVEGIDLVVNFDVPHDAEDYVHRIGRTARAATKGTAITLVNSRDKRKL 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            +IEKLIEK++D +      L   L  I  A      K  P  QKS G  + K+ + ++K
Sbjct: 355 VSIEKLIEKEIDRI-----PLPEHLVAIPEATTERHAKPKPAAQKS-GSGKPKRKFWNKK 408

Query: 418 SHIPLKE 424
                KE
Sbjct: 409 PKASSKE 415


>gi|228924198|ref|ZP_04087469.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835416|gb|EEM80786.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 481

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 133/362 (36%), Positives = 222/362 (61%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSNYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLAPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++K+S  ++ +P  IE+     T + IEH          +K +LL+ +   +
Sbjct: 183 FSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIE--DEKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|121601761|ref|YP_989161.1| DEAD/DEAH box helicase domain-containing protein [Bartonella
           bacilliformis KC583]
 gi|120613938|gb|ABM44539.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain
           protein [Bartonella bacilliformis KC583]
          Length = 471

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 152/373 (40%), Positives = 225/373 (60%), Gaps = 6/373 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  LGLS  ++  +L+AG  +P PIQ + IP++L+  D+ GIAQTG+GKT +F LP+L+ 
Sbjct: 19  FTKLGLSTLLIKNLLNAGISEPKPIQEQAIPVMLKGRDILGIAQTGSGKTLAFGLPILSQ 78

Query: 62  ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL  G  R  +  R LIL PTRELA Q+ +      K  +L+  L++GG+    Q K++ 
Sbjct: 79  ILTFGDKRSPKTARALILVPTRELAVQIEEMISAVVKGAHLSTCLIVGGVSRFKQIKRMG 138

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV+I TPGR++D      + ++    LV+DEADRMLDMGFI  ++ I  L+    QT
Sbjct: 139 AGVDVVIATPGRLMDLVREKFVDLSRSRFLVLDEADRMLDMGFINDVRRIAKLLCKEHQT 198

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+++++   L  P +IEV    +TA  I           ++K  +L +LL 
Sbjct: 199 ALFSATMPKEIKELANGLLNEPVKIEVVPQGTTAVEITQKLYCV--PKNEKRNILNRLLV 256

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D + + I+F   K     +   L+  G +V  IHGN  Q +R   L  F+EG+++++V
Sbjct: 257 NPDLI-SVIVFIRTKHGADAITRYLKNMGHAVATIHGNKSQNARQSALKAFREGSVKVLV 315

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+DIP V HV N+D+P  AE+Y+HRIGRTGR G  G A TL  +E +   + A
Sbjct: 316 ATDIAARGIDIPGVSHVINYDLPEDAESYVHRIGRTGRNGASGDAITLFDEESEESRLRA 375

Query: 360 IEKLIEKKVDWLN 372
           +E++I  K+   N
Sbjct: 376 VERIIRMKLTREN 388


>gi|120599647|ref|YP_964221.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120559740|gb|ABM25667.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 481

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 142/376 (37%), Positives = 226/376 (60%), Gaps = 15/376 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY + T +Q K IPL  +  D+   AQTGTGKTA+F LP  
Sbjct: 1   MKFETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTAAFALP-- 58

Query: 61  TILEKGRARVRMP--------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            +LEK  A + +         R L++ PTRELA QV DN +KY +   L    + GG   
Sbjct: 59  -VLEKLAAEILVSDGNDKPILRALVMTPTRELAIQVCDNIQKYSQFLPLKTIAVYGGANM 117

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q K +E+G D+L+ TPGR+ D   + +L ++++  LVIDEADRMLDMGF+  I+ +  
Sbjct: 118 NPQRKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKR 177

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L+    QT+LFSAT +D ++++++  L  P+ + V   ++ +  ++  +        +K 
Sbjct: 178 LIAPVHQTMLFSATYSDAVKQLAQKMLNEPQWVNVADTTTASTVVQEVY---RVDKRRKA 234

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL +L+  ++  +  ++F + K++  +L   L+  G +    HG+  Q +R ++L +FK
Sbjct: 235 ELLSELV-GRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEDFK 293

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G ++++VA+D+AARGLDI  +  V N ++P  AE+YIHRIGRTGRAG  G+A + V+  
Sbjct: 294 LGKLRVLVATDVAARGLDIQALPLVINLELPFFAEDYIHRIGRTGRAGLAGRAISFVSPS 353

Query: 353 DIKHIDAIEKLIEKKV 368
           D + +  IE LIE+K+
Sbjct: 354 DDEMLTEIEALIEQKL 369


>gi|229176129|ref|ZP_04303622.1| ATP-dependent RNA helicase dbpA [Bacillus cereus MM3]
 gi|228607364|gb|EEK64693.1| ATP-dependent RNA helicase dbpA [Bacillus cereus MM3]
          Length = 481

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 134/364 (36%), Positives = 224/364 (61%), Gaps = 10/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  LS +V  A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ--LLQ 240
           FSAT+ ++++K+S  ++  P  IE+     T + IEH       +  +K +LL+   +++
Sbjct: 183 FSATLPEDVEKLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTMIE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D+    IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +V
Sbjct: 241 NPDSC---IIFCRTQENVDHVYRQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG +GKA T +   + + ++ I
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNNGKAITFITPYENRFLEEI 357

Query: 361 EKLI 364
           E+ I
Sbjct: 358 EEYI 361


>gi|217972083|ref|YP_002356834.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS223]
 gi|217497218|gb|ACK45411.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
 gi|315266255|gb|ADT93108.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 469

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 221/369 (59%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P+++  +   GY + TPIQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 12  MAFSTLKLKPELLENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLL 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             L+  R R++   TL+L PTRELA QVA       +  +N+ V  L GG+P   Q   L
Sbjct: 72  NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH +R +L ++N+ +LV+DEADRML+MGF P +  I    P  RQ
Sbjct: 129 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +++Q +++  + +P  ++V     +    +H +   +    K      QLL
Sbjct: 189 TLLFSATFPEQIQSIAKQIMYDPSMVKVEGNHDSLSIAQHFY---HLDDDKARMQALQLL 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ ++FCN K+    +   LE  GFSV A+HG+++QR R + L  F   +  ++
Sbjct: 246 LLEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  VFN+ V    E +IHRIGRTGRAG  G A+T    +D   I  
Sbjct: 306 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIAL 365

Query: 360 IEKLIEKKV 368
           +E+ +E+++
Sbjct: 366 LEEYLEREI 374


>gi|229103076|ref|ZP_04233764.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-28]
 gi|228680360|gb|EEL34549.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-28]
          Length = 450

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 66  KIDTESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|319427542|gb|ADV55616.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 469

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 221/369 (59%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P+++  +   GY + TPIQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 12  MAFSTLKLKPELLENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLL 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             L+  R R++   TL+L PTRELA QVA       +  +N+ V  L GG+P   Q   L
Sbjct: 72  NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH +R +L ++N+ +LV+DEADRML+MGF P +  I    P  RQ
Sbjct: 129 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +++Q +++  + +P  ++V     +    +H +   +    K      QLL
Sbjct: 189 TLLFSATFPEQIQSIAKQIMYDPSMVKVEGNHDSLSIAQHFY---HLDDDKARMQALQLL 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ ++FCN K+    +   LE  GFSV A+HG+++QR R + L  F   +  ++
Sbjct: 246 LLEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  VFN+ V    E +IHRIGRTGRAG  G A+T    +D   I  
Sbjct: 306 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIAL 365

Query: 360 IEKLIEKKV 368
           +E+ +E+++
Sbjct: 366 LEEYLEREI 374


>gi|298483821|ref|ZP_07001993.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           D22]
 gi|298270008|gb|EFI11597.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           D22]
          Length = 643

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 141/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP+L 
Sbjct: 4   FEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            ++    + R+P++LIL PTREL  Q+A +   Y K  + L V  + GG   ++Q + L+
Sbjct: 64  QID---VKNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  + ++ I  +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTDSINAILADVPQERNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+ ++S+N+L+N K I +   + +   ++H  V    Q   K   L++++ 
Sbjct: 181 LLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKH--VVYTVQAKDKYEALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+V
Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRICNLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKLREI 357

Query: 361 EKLIEKKVDWLNGDLSS 377
           E++I KK  ++ G++ +
Sbjct: 358 ERIIGKK--FITGEMPT 372


>gi|167896715|ref|ZP_02484117.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 7894]
          Length = 435

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 148/371 (39%), Positives = 215/371 (57%), Gaps = 16/371 (4%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84
           TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  L+  R  V+    L+L PTREL
Sbjct: 2   TPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARRFDVQ---ALVLCPTREL 58

Query: 85  AAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           A QVA    +  +   N+ V  L GG P   Q + LE GA +++ TPGRI+DH +RG L 
Sbjct: 59  ADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPGRIMDHLDRGHLT 118

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           ++ +  LV+DEADRMLDMGF   I  +    P TRQTLLFSAT  D + K+S+ FL++PK
Sbjct: 119 LDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGIAKLSQQFLRHPK 178

Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
           R+++      ++  +  +  T  +      LL    +   T    I FCN K+   +L  
Sbjct: 179 RVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVST----IAFCNTKQQCRDLLD 234

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
            L  QGF V A+HG ++QR R ++L  F   +  ++VA+D+AARGLDI  +  V N DV 
Sbjct: 235 VLHAQGFHVLALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQLEAVINVDVT 294

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW-------LNGDLS 376
              E Y+HRIGRTGRA + G A +L +  ++  +  IE+ + ++V+W         GD +
Sbjct: 295 PDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLAELKAGGD-A 353

Query: 377 SLNPPLEKIDI 387
            L PP+E + I
Sbjct: 354 PLLPPMETLQI 364


>gi|296130315|ref|YP_003637565.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
 gi|296022130|gb|ADG75366.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
          Length = 598

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 143/411 (34%), Positives = 227/411 (55%), Gaps = 21/411 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  + P++V A+  AG  +P PIQ  T+P+ L  HD+ G A+TGTGKT  F +P+L  
Sbjct: 50  FADFDVRPEIVAALAAAGITQPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGVPLLHR 109

Query: 63  L----EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    E G  R+  P   + L++ PTRELA QVA +         + +  + GG  +E Q
Sbjct: 110 VIAPGEDGYDRLPAPGEPQALVVVPTRELAVQVAGDLAMASTGRKVRIVQVYGGRAYEPQ 169

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L+RGADV++ TPGR++D  N+  L + +   +V+DEAD MLD+GF+P ++ + +  P
Sbjct: 170 VEALQRGADVVVGTPGRMIDLLNQRHLRLKHATEVVLDEADEMLDLGFLPDVEKLLAATP 229

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234
             R T+LFSATM   +  ++  ++  P  I  + P    +T+++     Y  ++  K  L
Sbjct: 230 PNRHTMLFSATMPGAVVAMARRYMSQPTHIRASAPDDEGQTVKNIKQVAYRAHALDKVEL 289

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L ++LQ++      I+F   K+    +   L ++GF+  AIHG++ Q +R + L  F+ G
Sbjct: 290 LARILQARGRGLT-IVFARTKRTAAKVADELVERGFAAGAIHGDLGQGAREQALRAFRHG 348

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+  P   + Y+HR GRTGRAG  G A T V  +DI
Sbjct: 349 KVDVLVATDVAARGIDVEDVTHVVNYQCPEDEKTYLHRTGRTGRAGNKGTAVTFVDWDDI 408

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
                I+K +             L  P      +   H R++  +P+  TG
Sbjct: 409 PRWGLIDKAL------------GLGIPEPVETYSSSPHVREDLDVPEGVTG 447


>gi|163868666|ref|YP_001609875.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476]
 gi|161018322|emb|CAK01880.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476]
          Length = 467

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 152/369 (41%), Positives = 219/369 (59%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  LGL   ++  +  AG  KP PIQ + IP++L+ HD+ GIAQTG+GKT +F LP+L+ 
Sbjct: 20  FTKLGLPTLLIKNLCIAGMSKPKPIQEQAIPMMLKGHDILGIAQTGSGKTLAFGLPILSQ 79

Query: 62  ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL  G  R  +  R LIL PTRELA Q+ +      K  +L+  L+ GG+    Q K++ 
Sbjct: 80  ILALGDKRCPKTARALILAPTRELAVQIDEAIRTMAKGAHLSTCLVFGGVSRLKQIKRMA 139

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D      + ++    L++DEADRMLDMGFI  ++ I  L+   RQT
Sbjct: 140 AGVDVLIATPGRLRDLVREKCVDLSQSRFLILDEADRMLDMGFIHDVKQIAKLLHQERQT 199

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  +++  L +P +IEV    +TA  I           S+K  +L +LL 
Sbjct: 200 ALFSATMPKEIAALAKCLLNDPVKIEVAPQGTTALEITQKLYCV--PTSEKKNVLSKLL- 256

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +     + I+F   K     +   L K G+ V  IHGN  Q +R   L  F+E +++++V
Sbjct: 257 TNPAFDSVIVFTRTKHGADAVTLHLAKNGYLVATIHGNKSQGARQSALKAFRERSVKILV 316

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           A+D+AARG+DIP + HV N+D+P+ AE+Y+HRIGRTGR G  G+A TL   K +   + A
Sbjct: 317 ATDIAARGIDIPGISHVINYDLPDEAESYVHRIGRTGRNGASGEALTLFDEKIERTRLRA 376

Query: 360 IEKLIEKKV 368
           +E+LI  K+
Sbjct: 377 VERLIRMKL 385


>gi|126175665|ref|YP_001051814.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS155]
 gi|152999404|ref|YP_001365085.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS185]
 gi|160874024|ref|YP_001553340.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS195]
 gi|125998870|gb|ABN62945.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
 gi|151364022|gb|ABS07022.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|160859546|gb|ABX48080.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
          Length = 458

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 146/369 (39%), Positives = 223/369 (60%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P+++  +   GY + TPIQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 1   MAFSTLKLKPELLENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             L+  R R++   TL+L PTRELA QVA       +  +N+ V  L GG+P   Q   L
Sbjct: 61  NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH +R +L ++N+ +LV+DEADRML+MGF P +  I    P  RQ
Sbjct: 118 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +++Q +++  + +P  ++V     +    +H F       ++  AL  QLL
Sbjct: 178 TLLFSATFPEQIQSIAKQIMYDPSMVKVEGNHDSLSIAQH-FYHLDDDKARMQAL--QLL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ ++FCN K+    +   LE  GFSV A+HG+++QR R + L  F   +  ++
Sbjct: 235 LLEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  VFN+ V    E +IHRIGRTGRAG  G A+T    +D   I  
Sbjct: 295 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIAL 354

Query: 360 IEKLIEKKV 368
           +E+ +E+++
Sbjct: 355 LEEYLEREI 363


>gi|332534395|ref|ZP_08410235.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036129|gb|EGI72604.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 425

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 148/418 (35%), Positives = 242/418 (57%), Gaps = 9/418 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F+D  ++P+VV  + + G+   TPIQ K +P +    D+ G AQTGTGKT +F+      
Sbjct: 11  FSDFAIAPEVVAGLTENGFEYCTPIQAKCLPFICDGRDIAGQAQTGTGKTLAFLTATCHR 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  +A  + PR LI+ PTRELA Q+  + +    + NL + L+ GG  +E Q  +LE+
Sbjct: 71  LLQSSKAPSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGEDYEKQRAQLEK 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQ 179
           G D+LI T GR++D + +G   +N IE++V+DEADRM D+GFI  I+ +   +P T  R 
Sbjct: 131 GVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMFDRMPDTSKRL 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++  +Q+++   + NP+ +++     T + I+      +     K  LL  L+
Sbjct: 191 NLLFSATLSYRVQELAFEHMTNPEHVQIEPDVKTGKRIQEELF--HPSQEDKIKLLLTLI 248

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++  +  I+F N K +   +   L+  G  V  + G+++Q+ R  IL+ F +G +  +
Sbjct: 249 E-EEWPEKAIVFANTKHSCETVYAWLKSDGHRVGMLTGDVNQKKRQTILAQFSKGDLDFL 307

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGL IP+V HVFNFD+P+  E+Y+HRIGRTGRAG  G A +   ++   ++  
Sbjct: 308 VATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTGRAGASGHAISFACEQYAYNLHE 367

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE+ IE  +   + D ++L   L +  I +    R  +  P+  +    R+ N S QK
Sbjct: 368 IEEYIEHSIPLSHYDKTALLDDLTQPIIQR---KRNYSTGPRNRSNNSGRRPNNSYQK 422


>gi|296138846|ref|YP_003646089.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
 gi|296026980|gb|ADG77750.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
           DSM 20162]
          Length = 536

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 150/384 (39%), Positives = 224/384 (58%), Gaps = 26/384 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+   +V A+   G  +   IQ  T+PL L  +D+ G A+TG GKT  F +P+L  
Sbjct: 38  FAELGVDQGIVDALGKRGIERTFAIQELTLPLALAGNDLIGQARTGMGKTYGFGVPLLDR 97

Query: 63  L---------EKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNY---------NLTV 103
           L         E G RA    PR LI+ PTREL  QV D+  +              +L +
Sbjct: 98  LVTQARADVGEDGLRALDGTPRALIIVPTRELCVQVTDDLAQASDGVRVQTTKGERDLKI 157

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163
             + GG P+EAQ + L++G DV++ TPGR+LD  N+G L++  I+ILV+DEAD MLD+GF
Sbjct: 158 TSIYGGRPYEAQIEALQKGVDVVVGTPGRLLDLANQGHLVLGKIQILVLDEADEMLDLGF 217

Query: 164 IPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA---ETIEHC 220
           +P I+ I ++VP  RQT+LFSATM   +  ++  FL+ P  +       +A    T ++ 
Sbjct: 218 LPDIERILTMVPTDRQTMLFSATMPGPIITLARTFLKQPTHVRAEHHDDSAVHERTTQYV 277

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
           +    A    K  L+ ++LQ+Q      +IF   K+    +   L ++GF V A+HG++ 
Sbjct: 278 Y---RAHALDKTELVAKVLQAQGRGAT-MIFTRTKRTAQKVADELGERGFKVGAVHGDLG 333

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q +R K L  F++G+I ++VA+D+AARG+DI DV HV NF  P   + Y+HRIGRTGRAG
Sbjct: 334 QVAREKALGKFRDGSIDVLVATDVAARGIDIDDVTHVINFQCPEDDKTYVHRIGRTGRAG 393

Query: 341 RHGKAFTLVAKEDIKHIDAIEKLI 364
           + G A TLV  +++   + I+K +
Sbjct: 394 KTGTAVTLVDWDELHRWELIDKAL 417


>gi|237752663|ref|ZP_04583143.1| ATP-dependent RNA helicase [Helicobacter winghamensis ATCC BAA-430]
 gi|229376152|gb|EEO26243.1| ATP-dependent RNA helicase [Helicobacter winghamensis ATCC BAA-430]
          Length = 515

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 148/361 (40%), Positives = 212/361 (58%), Gaps = 9/361 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G    V+  + +AG+ +P+PIQ + IPL+L   D+   AQTGTGKTA+F LP++  
Sbjct: 16  FESFGFKKSVLRGIKEAGFSEPSPIQKEAIPLILDGLDIIAQAQTGTGKTAAFGLPLINN 75

Query: 63  LEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+  G   V     LI+ PTRELA QV+D   K GK   +    L GG P   Q + LE+
Sbjct: 76  LKNDGSIEV-----LIVTPTRELAMQVSDEIFKLGKYNRVKTVSLFGGQPIRRQIELLEK 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    +L      ++V+DE+D MLDMGF+  I+ I + +   RQTL
Sbjct: 131 KPQVIIATPGRLLDHLRNERLKNFYPSVVVLDESDEMLDMGFLDDIEEIFTYLSSDRQTL 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++ +++  L NPK I++    +T + I   +     Q  +   +  +L+ S
Sbjct: 191 LFSATMPTPIKHLAQKILSNPKLIKITQDDTTNQDISQRYYIINEQEREDAIV--RLIDS 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   K  IIF   KK    L   L  +GF   A+HG+++QR R+K +  FK+ TI ++VA
Sbjct: 249 EMPQK-AIIFTRMKKEADILSERLLSRGFKAGALHGDMEQRERVKSIKAFKDSTIDILVA 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HVFNF +P   E+Y+HRIGRTGRAG+ G A TL    + K +  I+
Sbjct: 308 TDIAARGLDISGVSHVFNFHIPLNPESYVHRIGRTGRAGKKGVAITLATPLEFKELRRIK 367

Query: 362 K 362
           +
Sbjct: 368 E 368


>gi|229178806|ref|ZP_04306167.1| ATP-dependent RNA helicase [Bacillus cereus 172560W]
 gi|228604682|gb|EEK62142.1| ATP-dependent RNA helicase [Bacillus cereus 172560W]
          Length = 458

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 66  KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFIM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|71279965|ref|YP_269372.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71145705|gb|AAZ26178.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 399

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 140/365 (38%), Positives = 215/365 (58%), Gaps = 5/365 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    L   ++  V   GY +PTPIQ + IP ++  +D+ GIAQTGTGKTA+F LP++ 
Sbjct: 3   EFKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIIN 62

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              + +   + +  R+LIL PTRELA+Q+  N + Y     L   ++ GG+  +AQ   +
Sbjct: 63  KFGRNKIDIKAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDSI 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G D+L+ TPGR+LD    G +    +E+ V+DEAD MLDMGF   +Q+I S +P +RQ
Sbjct: 123 ELGLDILVATPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E++ ++E  L +P +I++   + T + +       +   S K  LL  +L
Sbjct: 183 TLLFSATMPAEIEILAEAILTDPTKIQITAETVTIDLVNQSVY--HLDKSNKVPLLFNIL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D  K  +IFC  K     +  +LEK   +  ++H    Q  R + L NFK+ T++++
Sbjct: 241 TKADYEKV-LIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ ++  V N+++P    NYIHRIGRT RAG+ G A +   + DI+ +  
Sbjct: 300 VATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIRQLTN 359

Query: 360 IEKLI 364
           IE  I
Sbjct: 360 IENSI 364


>gi|15896005|ref|NP_349354.1| DEAD-box ATP dependent DNA helicase [Clostridium acetobutylicum
           ATCC 824]
 gi|15025785|gb|AAK80694.1|AE007772_6 ATP dependent RNA helicase DeaD, superfamily II [Clostridium
           acetobutylicum ATCC 824]
 gi|325510158|gb|ADZ21794.1| ATP dependent RNA helicase DeaD, superfamily II [Clostridium
           acetobutylicum EA 2018]
          Length = 481

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 135/362 (37%), Positives = 220/362 (60%), Gaps = 6/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGLS +++ ++   GY KP+ IQ K IP++L   D+   A+TG+GKTA+F +P  
Sbjct: 4   LSFRDLGLSEEILKSIEKLGYKKPSSIQEKVIPVILNGKDIIAKAKTGSGKTAAFAIP-- 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + EK     R P+ L+L PTRELA Q+ ++F   G+   L    + G  P   Q ++L+
Sbjct: 62  -VCEKIELEEREPQVLVLAPTRELAYQIKEDFLNIGRFKRLRCISIFGKEPISNQIRELK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+LDH  RG L +  ++  +IDEAD ML+MGFI  +++I   +P  + T
Sbjct: 121 QRVHIVVGTPGRVLDHIERGTLNLEKVKYFIIDEADEMLNMGFIEQVESILIKMPKNKNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT+ +E+  +S+ +++N + IEV     T   I   +    ++  +K  LL++++ 
Sbjct: 181 FLFSATLPEEIVMLSKKYMKNFENIEVQNEGKTKGGIHQVYYEVESR--EKFDLLKKVIY 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++   + IIFC  K NV ++   ++   FS  AIHG + Q +R+ +++ FK G    ++
Sbjct: 239 -KEVPGSSIIFCRTKNNVEDVLVKMKNMKFSCMAIHGGMLQENRIAVMNAFKRGEFTFLI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ +V HV N+D+P   E+YIHRIGRTGR G  G A T V  ++ + +  I
Sbjct: 298 ATDVAARGIDVENVTHVINYDIPMEKESYIHRIGRTGRMGNKGIAITFVTSKEERFLKEI 357

Query: 361 EK 362
           E+
Sbjct: 358 EE 359


>gi|229109888|ref|ZP_04239470.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-15]
 gi|228673542|gb|EEL28804.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-15]
          Length = 458

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 144/364 (39%), Positives = 221/364 (60%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP +L   D+ G A+TGTGKT +FVLP   
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPFILSGKDIIGQAKTGTGKTLAFVLP--- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
           ILEK        + LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 63  ILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|49477717|ref|YP_036595.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118477863|ref|YP_895014.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|196033783|ref|ZP_03101194.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196043209|ref|ZP_03110447.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|225864437|ref|YP_002749815.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|228927528|ref|ZP_04090581.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228946079|ref|ZP_04108415.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229122021|ref|ZP_04251237.1| ATP-dependent RNA helicase [Bacillus cereus 95/8201]
 gi|49329273|gb|AAT59919.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118417088|gb|ABK85507.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis str. Al Hakam]
 gi|195993463|gb|EDX57420.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196025518|gb|EDX64187.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|225786741|gb|ACO26958.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|228661364|gb|EEL16988.1| ATP-dependent RNA helicase [Bacillus cereus 95/8201]
 gi|228813592|gb|EEM59877.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228832136|gb|EEM77720.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 450

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 66  KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|282897303|ref|ZP_06305305.1| DEAD/DEAH box helicase-like protein [Raphidiopsis brookii D9]
 gi|281197955|gb|EFA72849.1| DEAD/DEAH box helicase-like protein [Raphidiopsis brookii D9]
          Length = 497

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 140/362 (38%), Positives = 214/362 (59%), Gaps = 5/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LG+SP+    + + G+  PT IQ + IP +L   DV G +QTGTGKTA+F LP+L
Sbjct: 4   ITFQELGISPERATHLENMGFTTPTNIQSQAIPQLLAGRDVVGQSQTGTGKTAAFSLPIL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  +   R  + L+L PTRELA QV D   ++  +  L V  + GG   + Q  +L+
Sbjct: 64  ERLDPNK---RAVQALVLTPTRELAMQVHDAISQFMGDSELRVLAIYGGQSIDRQMIQLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++D   RG L ++ ++  V+DEAD ML MGFI  +  I S  P  RQT
Sbjct: 121 RGVHVVVGTPGRVIDLLERGSLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPQERQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++++   FL +P  + V  P +T   I          ++K  A LQ +L+
Sbjct: 181 ALFSATMPPSIRQLVNKFLNSPVTVTVEQPKATPTKINQVAYLIPRHWTKAKA-LQPILE 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D  +  +IF   ++    L + L+  G SV   HG++ Q++R ++L+ F+   ++ +V
Sbjct: 240 MEDP-ETALIFVRTRRTAAELTNQLQSAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV NFD+P+  E Y+HRIGRTGRAG+ G A +LV   + +   A 
Sbjct: 299 ATDIAARGLDVDLLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQAF 358

Query: 361 EK 362
           E+
Sbjct: 359 ER 360


>gi|187779372|ref|ZP_02995845.1| hypothetical protein CLOSPO_02968 [Clostridium sporogenes ATCC
           15579]
 gi|187772997|gb|EDU36799.1| hypothetical protein CLOSPO_02968 [Clostridium sporogenes ATCC
           15579]
          Length = 374

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 150/366 (40%), Positives = 220/366 (60%), Gaps = 6/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++  + +   ++PTPIQ ++I L+   +DV   AQTGTGKT +F+LPM   
Sbjct: 4   FEELGLSDSIIDVLKNQRIIEPTPIQEESIMLIKNGNDVIAEAQTGTGKTLAFLLPMF-- 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E     +   + LI+ PTRELA Q+ +   K  K  +L +    GG    +Q KKL+  
Sbjct: 62  -ENISPDINAIQGLIITPTRELAIQITEEAMKLKKAKDLNILAAYGGKDIGSQIKKLKNN 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++I TPGR+LDH NR  L   +++ LV+DEAD ML MGF   +++I    P  RQTL 
Sbjct: 121 IHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNEVRSIIDNTPRKRQTLC 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++K++   +++PK + +     T + I+   + T  +  +K   L ++L  +
Sbjct: 181 FSATMNSEVKKLAYKNMRDPKLVIIEKEEVTLKNIKQVLIETTDR--RKQEDLCKILDEE 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     IIFC  K+ V NL   L K+G++   +HG+I Q  R +I+ +FK   IQ ++A+
Sbjct: 239 NPFM-AIIFCRTKRRVDNLEEDLYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HVFN+D+P  AE+YIHRIGRTGRAG  G  F  VA +D   +D IEK
Sbjct: 298 DVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEATLDTIEK 357

Query: 363 LIEKKV 368
            I+ K+
Sbjct: 358 EIKLKI 363


>gi|326383298|ref|ZP_08204986.1| DEAD/DEAH box helicase domain-containing protein [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326198048|gb|EGD55234.1| DEAD/DEAH box helicase domain-containing protein [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 526

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 155/421 (36%), Positives = 235/421 (55%), Gaps = 34/421 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+   +V A+   G  +   IQ  T+PL L   D+ G A+TG GKT  F +P+L  
Sbjct: 30  FAELGVDAAIVAALEADGKTRTFAIQELTLPLALGGSDLIGQARTGMGKTYGFGVPLLHR 89

Query: 63  LEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT----------VALLI 107
           L        R     PR LI+ PTREL  QV ++ E   K  ++T          +  + 
Sbjct: 90  LVNAESTGLRGLDNTPRALIIVPTRELCVQVTEDLEVAAKGVDVTLTDGTVRPLKITSIY 149

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG P+E Q ++L+ G DV++ TPGR+LD   +G L++  + +LV+DEAD MLD+GF+P I
Sbjct: 150 GGRPYEQQIEELQTGVDVVVGTPGRLLDLAQQGHLVLGKVGVLVLDEADEMLDLGFLPDI 209

Query: 168 QNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA---ETIEHCFVAT 224
           + I   +P  RQT+LFSATM   +  ++  FL  P  I     + +A    T ++ +   
Sbjct: 210 ERIMGALPTDRQTMLFSATMPGPIVTLARTFLNRPTHIRAEHANDSAVHERTTQYVY--- 266

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
            A    K  L+ ++LQS+      +IF   K+    +   L ++GFSV A+HG++ Q +R
Sbjct: 267 RAHAMDKAELVARVLQSEGRGAT-MIFTRTKRTAQKVADDLAERGFSVGAVHGDLGQVAR 325

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            K L+ F+EG I ++VA+D+AARG+D+ DV HV N+  P+  + Y+HRIGRTGRAGR G 
Sbjct: 326 EKALNKFREGKIDVLVATDVAARGIDVDDVTHVINYQCPDDEKTYVHRIGRTGRAGRTGI 385

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           A TLV  +++   + I+K        L  D++    P+E    +  +H R+   IP  +T
Sbjct: 386 AITLVDWDELHRWELIDKA-------LGLDMAD---PVET--YSTSDHLREQLGIPDDAT 433

Query: 405 G 405
           G
Sbjct: 434 G 434


>gi|320583325|gb|EFW97540.1| ATP-dependent rRNA helicase, putative [Pichia angusta DL-1]
          Length = 470

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 148/370 (40%), Positives = 222/370 (60%), Gaps = 13/370 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL P ++ A+    +  PTPIQ +++P  LQ  D+ GIAQTG+GKTA+F +P+L  
Sbjct: 69  FKELGLQPDILDAIEKLNFSTPTPIQAQSLPHSLQGRDIIGIAQTGSGKTAAFAIPILQA 128

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L + +         +L PTRELA Q+ + F+  G N  L  + ++GG+    Q K+L R 
Sbjct: 129 LWEAQTPYF---ACVLAPTRELAYQIRETFDALGVNMGLRCSTIVGGMDMMEQAKELMRK 185

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             V++ TPGR++DH    K   +  ++ LV+DEADR+LDM F P +  I +++P  R+T 
Sbjct: 186 PHVIVATPGRLMDHLENTKGFSLKALKYLVMDEADRLLDMEFGPVLDRILNIIPRERKTY 245

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+T +++K+    L +P +I VN   ST +T+    +     Y  K   L  LL +
Sbjct: 246 LFSATLTSKVEKLQRASLIDPVKIAVNDKYSTVDTLIQTLMVVPDGY--KNTYLIYLL-N 302

Query: 242 QDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   K+ I+F   C   + V  L   L   GFS   +HG + Q  R+  L+ FK G  Q+
Sbjct: 303 EYVGKSVIVFARTCAHAQKVALLARIL---GFSAIPLHGQLTQAQRLGALNKFKSGDKQI 359

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIP V  V N+D+P  ++ YIHR+GRT RAGR GK+ +LV + D++ I 
Sbjct: 360 LVATDVAARGLDIPSVDLVVNYDIPTDSKAYIHRVGRTARAGRSGKSVSLVTQYDLELIL 419

Query: 359 AIEKLIEKKV 368
            IEK+I+ K+
Sbjct: 420 RIEKVIDMKL 429


>gi|291437415|ref|ZP_06576805.1| helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291340310|gb|EFE67266.1| helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 463

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 142/374 (37%), Positives = 220/374 (58%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F +LG+ P+   A+   G + P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L  
Sbjct: 5   FRELGILPETAEALEAVGIITPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLER 64

Query: 61  -TI---LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            T+   +E GRA+       P+ L++ PTREL  QV ++    GK  N+ V  + GG  +
Sbjct: 65  VTVPVDVEAGRAKPEDLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVTAIYGGRAY 124

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E Q + L++G DV++ TPGR+LD   + KL + +++ LV+DEAD MLD+GF+P ++ I +
Sbjct: 125 EPQVEALKKGVDVVVGTPGRLLDLAGQKKLNLAHVKALVLDEADEMLDLGFLPDVEKIIN 184

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKK 231
           L+P  RQT+LFSATM   +  ++  ++  P  I    P     T+ +     Y A    K
Sbjct: 185 LLPVRRQTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANTKQFVYRAHNMDK 244

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             ++ ++LQ++      ++FC  K+   +L   L+++GF+  A+HG++ Q +R + L  F
Sbjct: 245 PEMVARILQAEG-RGLAMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAF 303

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAG  G A TLV  
Sbjct: 304 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLVDW 363

Query: 352 EDIKHIDAIEKLIE 365
           +DI     I K +E
Sbjct: 364 DDIPRWQLINKALE 377


>gi|71065503|ref|YP_264230.1| putative ATP-dependent RNA helicase [Psychrobacter arcticus 273-4]
 gi|71038488|gb|AAZ18796.1| putative ATP-dependent RNA helicase [Psychrobacter arcticus 273-4]
          Length = 396

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 145/375 (38%), Positives = 230/375 (61%), Gaps = 15/375 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL LS   + AV D G+ + TPIQ K +P  L   D  G AQTGTGKTA+F+L ++  
Sbjct: 19  FTDLPLSAATLRAVSDLGFTELTPIQAKILPHTLANQDAIGQAQTGTGKTATFLLTIMEA 78

Query: 63  LEK------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           L K          +  PR +++ PTRELA Q+ D+     K  +L    ++GG  +E Q 
Sbjct: 79  LLKRPFAADEERHLGEPRAVVMAPTRELAQQIFDDCIALNKYTSLHSVCIMGGTNYETQQ 138

Query: 117 KKLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            +LER   D+LI TPGR++D  ++G + ++ +E+LV+DEADRMLDMGFIP I+ +   +P
Sbjct: 139 HELERQYVDILIATPGRLIDLMHKGMVYLDRVEVLVLDEADRMLDMGFIPDIKRLVGRMP 198

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKC 232
               RQ+LLFSAT   ++  ++  +L  P  +E+     T+E + +H ++ T  Q   K 
Sbjct: 199 PNTDRQSLLFSATFNQDVMGLAYRWLHEPAFVEIEPEHKTSELVDQHFYLLTEDQ---KL 255

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             +++++ +  T++  IIF N+K  V  L H L +QG  +  + G++ Q+ R K L  FK
Sbjct: 256 EAVERII-TDTTVEKVIIFANRKDQVKRLYHKL-RQGHKIVMLSGDVIQQKREKYLQRFK 313

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +G   ++VA+D+A RG+ + DV HV N+ +P++ ++Y+HRIGRTGRAG+ G + + V+++
Sbjct: 314 DGHASVLVATDVAGRGIHVDDVSHVINYTLPDQPDDYVHRIGRTGRAGKTGISISFVSED 373

Query: 353 DIKHIDAIEKLIEKK 367
           D  +I A+EK ++ K
Sbjct: 374 DAFNIPALEKHLDTK 388


>gi|28211624|ref|NP_782568.1| ATP-dependent RNA helicase [Clostridium tetani E88]
 gi|28204066|gb|AAO36505.1| ATP-dependent RNA helicase [Clostridium tetani E88]
          Length = 524

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 147/372 (39%), Positives = 225/372 (60%), Gaps = 11/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGL+  ++ A+ D G+  P+ IQ + IP+VLQ  DV G AQTGTGKT +F  P+L
Sbjct: 4   LKFNNLGLNEDILKAIEDMGFETPSKIQAEVIPIVLQGFDVIGQAQTGTGKTLAFGAPVL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +V+   ++IL PTRELA QV        K     +  + GG   + Q K L+
Sbjct: 64  NSISNESKKVK---SIILAPTRELAIQVYKELTTVAKYTKFKLLPVYGGDSIDRQIKSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D++I TPGR+ D  NR  L +++IE LV+DEAD ML+MGF+  I+NI       R+T
Sbjct: 121 KGIDIVIGTPGRVQDLINRKALNLSHIEFLVLDEADEMLNMGFVDDIENILKSCNEDRRT 180

Query: 181 LLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQ 237
           LLFSATM  E++K+++ +++ + K + +   S T  ++E  +  V    ++   C +L  
Sbjct: 181 LLFSATMPSEIKKIAKKYMKKDAKHVAIAQNSMTVSSVEQFYYEVKQKNKFESLCKVL-- 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              S D     IIFC  KK V  L  S++++GFS   +HG++ Q  R+  L+ FKE TI 
Sbjct: 239 ---SVDEPTRAIIFCKTKKGVDELVSSMKEKGFSAEGMHGDMTQSHRLNTLNRFKERTIP 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARG+D+ D  HV N+D+P   E+Y+HRIGRTGRA + G A+T V  ++   +
Sbjct: 296 FLVATDVAARGIDVKDTSHVINYDLPQDTESYVHRIGRTGRANKKGTAYTFVTPKEFSSL 355

Query: 358 DAIEKLIEKKVD 369
             I+K+ + K++
Sbjct: 356 KRIQKISKSKIN 367


>gi|319653101|ref|ZP_08007203.1| hypothetical protein HMPREF1013_03818 [Bacillus sp. 2_A_57_CT2]
 gi|317395022|gb|EFV75758.1| hypothetical protein HMPREF1013_03818 [Bacillus sp. 2_A_57_CT2]
          Length = 463

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 139/362 (38%), Positives = 219/362 (60%), Gaps = 7/362 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LG+S K+   +L  G  KPTPIQ + IP V++  D+   AQTGTGKT +F+LP+L 
Sbjct: 3   DFLTLGISKKLTNILLSHGIGKPTPIQEQAIPAVMEGRDIIAQAQTGTGKTFAFILPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            L+     ++    LI+ PTRELA Q+ D  +K    + +L V  + GG   + Q  KL+
Sbjct: 63  KLDPDAVHIQ---ALIVTPTRELALQITDEVQKLTAGDDDLEVLAVYGGQDVDKQLNKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+LDH  R  + ++  + LV+DEAD+ML +GF+  +++I    P  RQT
Sbjct: 120 KKVQIVVGTPGRLLDHIKRKTIDLSQADFLVLDEADQMLHIGFLDEVEDIIKETPGKRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+  E++ ++   ++ P+ +++      A++++   + T  +   K A L QL+Q
Sbjct: 180 MLFSATIPAEIRNLARKHMKEPEYMQIEKTQGPAQSVKQIAIHTIDRA--KQATLMQLIQ 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       +IFC  K+ V  L   L+  GF    +HG++ Q  R +++  F++  +QL+V
Sbjct: 238 THRPYL-AVIFCRTKRRVSKLNDVLKSNGFQCDELHGDLSQSKREQVMKRFRDAELQLLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+Y+HRIGRTGRAG  G A T  +  D   ++AI
Sbjct: 297 ATDVAARGLDVEGVTHVFNYDIPLDPESYVHRIGRTGRAGMKGMAITFYSSADKPLLEAI 356

Query: 361 EK 362
           EK
Sbjct: 357 EK 358


>gi|66812836|ref|XP_640597.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
 gi|74897154|sp|Q54TJ4|DDX27_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx27; AltName:
           Full=DEAD box protein 27
 gi|60468614|gb|EAL66617.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
          Length = 783

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 147/360 (40%), Positives = 208/360 (57%), Gaps = 2/360 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  ++ AV   G+ +PTPIQ K IPL L   D+   A TG+GKTA+F+LP+L  
Sbjct: 192 FEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLER 251

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L    +  R  R LIL PTRELA Q     E   +  N+T  L++GG+  +AQ  +L + 
Sbjct: 252 LLFRDSEYRAIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRKS 311

Query: 123 ADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR++DH  N   + ++++EIL++DEADR+LDMGF   I  I    P  RQT+
Sbjct: 312 PDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQTM 371

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY-SKKCALLQQLLQ 240
           LFSAT+ DE++ +++  LQ P R++V+       T+E  FV    Q+ S + A+L  L  
Sbjct: 372 LFSATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRPAILLSLCT 431

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIFC  KK V  L             +HGN+ Q  R   L  F++G +  ++
Sbjct: 432 RVFNQGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGQVNYLL 491

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+A+RGLDI  V  V N+++PN   NYIHR+GRT RAG  GK+ + +   D K +  I
Sbjct: 492 ASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDI 551


>gi|229079638|ref|ZP_04212172.1| ATP-dependent RNA helicase [Bacillus cereus Rock4-2]
 gi|228703680|gb|EEL56132.1| ATP-dependent RNA helicase [Bacillus cereus Rock4-2]
          Length = 454

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 66  KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|206970279|ref|ZP_03231232.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|206734856|gb|EDZ52025.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
          Length = 481

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 133/362 (36%), Positives = 222/362 (61%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS ++V A+   GY  PT +Q + IP+ L++ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSDYKLSTEIVRALTGLGYNHPTEVQGEVIPVALEKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++K+S  ++ +P  IE+     T + IEH          +K +LL+ +   +
Sbjct: 183 FSATLPEDVEKLSRTYMNSPIHIEIKAAGITTDKIEHTLFEVIE--DEKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|167035545|ref|YP_001670776.1| ATP-dependent RNA helicase RhlB [Pseudomonas putida GB-1]
 gi|166862033|gb|ABZ00441.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 489

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 225/373 (60%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS +++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ +++ 
Sbjct: 102 FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQ 161

Query: 63  LEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L++        +  PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K 
Sbjct: 162 LQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKA 221

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 222 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 281

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT TD++  +++ +  NP  +E+   +  +ET+E    A     S K  LL
Sbjct: 282 SERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAG--SDKYKLL 339

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ +Q+  +  ++F N+K  V  +   L + G +   + G++ Q  R++ L +F+EG 
Sbjct: 340 YNLV-TQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGR 398

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 399 ITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGSSGVSISFAGEDDSY 458

Query: 356 HIDAIEKLIEKKV 368
            + AIE+L+ +K+
Sbjct: 459 QLPAIEELLGRKI 471


>gi|94499046|ref|ZP_01305584.1| ATP-dependent RNA helicase [Oceanobacter sp. RED65]
 gi|94428678|gb|EAT13650.1| ATP-dependent RNA helicase [Oceanobacter sp. RED65]
          Length = 475

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 141/372 (37%), Positives = 225/372 (60%), Gaps = 9/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++ ++ D G+   +PIQ + +P  L   D+ G AQTGTGKTA+F++ +L  
Sbjct: 100 FHDFNLDARIMRSIQDLGFSYASPIQAEALPYTLAGRDIIGKAQTGTGKTAAFLITVLQK 159

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   +   R    PR LIL PTRELA Q+A + +   K  +L +  ++GG+ ++ Q ++L
Sbjct: 160 LLTVKPEERFASEPRALILAPTRELAMQIAKDADGLSKYADLNIVTVLGGVDYDKQKEQL 219

Query: 120 ERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176
           E    DV++ TPGR+LD+  +G + ++ +E+LVIDEADRMLDMGFIP ++ I    P   
Sbjct: 220 ENEVVDVVVATPGRLLDYLQQGIVYLDQVEMLVIDEADRMLDMGFIPDLKRIIRGTPEKS 279

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT LFSAT   ++  +SE++   P+++E+   S   ET++  F++   Q ++K   L 
Sbjct: 280 IRQTQLFSATYPYDVVALSESWTYKPEQVEIEPESVATETVKQQFISL--QETQKDNALI 337

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + L+ ++T K+ IIF N++    +L   L K+G     + G + Q  RMK L  FK    
Sbjct: 338 EYLEKENTGKS-IIFANRRDTCRDLADRLNKRGVKALLLSGEVAQAKRMKTLDRFKSEDG 396

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+A RG+ +  + HVFN+++P+  E+Y+HRIGRTGRAG  G A T + + +   
Sbjct: 397 AVLVATDVAGRGIHVDGITHVFNYNLPDDPEDYVHRIGRTGRAGESGTAITFIDEYEAYG 456

Query: 357 IDAIEKLIEKKV 368
           +  +E  + KKV
Sbjct: 457 LMDLESYLGKKV 468


>gi|254449290|ref|ZP_05062736.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium HTCC5015]
 gi|198261099|gb|EDY85398.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium HTCC5015]
          Length = 433

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 149/409 (36%), Positives = 240/409 (58%), Gaps = 20/409 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++LGLS  ++ ++   G+   TPIQ +T+PLVL+  D+ G AQTGTGK+A+F++     
Sbjct: 11  FSELGLSDALLDSIQATGFEYCTPIQAQTLPLVLKGQDIAGQAQTGTGKSAAFLIATFER 70

Query: 62  ILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L +     R P   R LIL PTRELA Q+  + E+ G+  +L +AL  GG  +E Q K 
Sbjct: 71  LLRQPAPAERKPQQVRALILAPTRELAIQIHKDAEQLGQATDLKLALAYGGANYEQQRKT 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +E GADVLI TPGRI+D++ +    +   +++V+DEADRM D+GFI  ++ +    P  +
Sbjct: 131 IEAGADVLIGTPGRIIDYWKQKVFDLKYCQVVVLDEADRMFDLGFISDVRYLMRRCPEPK 190

Query: 179 Q--TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           Q  +LLFSAT++  +Q+++   + NP +IEV     TA+ +E      +    +K  LL 
Sbjct: 191 QRLSLLFSATLSLRVQELAYEHMDNPTKIEVAAEQVTADRVEQYLY--HPANDEKIPLLL 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L +     ++ IIF N K+N   +   L+  G     + G++ Q+ R +++  FK G +
Sbjct: 249 GLFKHYQPQRS-IIFVNTKRNADTVWGYLKGNGIEAALLSGDVPQKKRTRMVEQFKAGEL 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             +VA+D+A+RGL +P V HVFN+D+P  AE+Y+HRIGRT RAG  G A +   ++   +
Sbjct: 308 TALVATDVASRGLHVPGVSHVFNYDLPQSAEDYVHRIGRTARAGESGYALSFACEDTAFN 367

Query: 357 IDAIEKLIEKKVD--WLNGD-LSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           +  IE+ IE  +    ++ D L++  PP+++         R+  P P +
Sbjct: 368 LMDIEEYIEGSIPTAAVSADLLATPEPPIKR--------ERRRGPPPNR 408


>gi|284992633|ref|YP_003411187.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus
           obscurus DSM 43160]
 gi|284065878|gb|ADB76816.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus
           DSM 43160]
          Length = 611

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 140/367 (38%), Positives = 216/367 (58%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D  + P VV A+ +AG  +   IQ  T+PL L  +D+ G A+TGTGKT  F +PML  
Sbjct: 110 FSDFDVHPDVVAALAEAGITRTFAIQELTLPLALAGNDLIGQARTGTGKTLGFGVPMLQR 169

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++        +P+ L++ PTREL  QV+ +    G    + V  + GG  FE Q   L+ 
Sbjct: 170 VVPPAEGGDGVPQALVVVPTRELCVQVSRDLATAGSKRGIRVQAIYGGRAFEPQVAALQA 229

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G ++++ TPGR+LD   RG L++  +++LV+DEAD MLD+GF+P I+ I ++VP  RQT+
Sbjct: 230 GVEIVVGTPGRLLDLAQRGDLILGKVKVLVLDEADEMLDLGFLPDIERILAMVPDKRQTM 289

Query: 182 LFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           LFSATM   +  +S +F+  P  I     +  S+  +T +  +    A    K  LL ++
Sbjct: 290 LFSATMPGPIVTLSRSFMTQPTHIRAHGNDEGSTVPQTTQFIY---RAHNLDKPELLSRV 346

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ++D     ++FC  K+    +   L ++GF+  A+HG++ Q +R + L  F+ G + +
Sbjct: 347 LQARDRSLV-MVFCRTKRTAQKVADELVERGFAAAAVHGDLGQGAREQALRAFRSGKVDV 405

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAG  G A TLV  +DI    
Sbjct: 406 LVATDVAARGIDVTGVSHVVNYQCPEDEKTYLHRIGRTGRAGSEGVAVTLVDWDDIPRWQ 465

Query: 359 AIEKLIE 365
            I K +E
Sbjct: 466 LINKALE 472


>gi|146292357|ref|YP_001182781.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145564047|gb|ABP74982.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 481

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 142/376 (37%), Positives = 226/376 (60%), Gaps = 15/376 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY + T +Q K IPL  +  D+   AQTGTGKTA+F LP  
Sbjct: 1   MKFETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTAAFALP-- 58

Query: 61  TILEKGRARVRMP--------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            +LEK  A + +         R L++ PTRELA QV DN +KY +   L    + GG   
Sbjct: 59  -VLEKLAAEILVNDDNDKPILRALVMTPTRELAIQVCDNIQKYSQFLPLKTIAVYGGANM 117

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q K +E+G D+L+ TPGR+ D   + +L ++++  LVIDEADRMLDMGF+  I+ +  
Sbjct: 118 NPQRKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKR 177

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L+    QT+LFSAT +D ++++++  L  P+ + V   ++ +  ++  +        +K 
Sbjct: 178 LIAPVHQTMLFSATYSDAVKQLAQKMLNEPQWVNVADTTTASTVVQEVY---RVDKRRKA 234

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL +L+  ++  +  ++F + K++  +L   L+  G +    HG+  Q +R ++L +FK
Sbjct: 235 ELLSELV-GRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEDFK 293

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G ++++VA+D+AARGLDI  +  V N ++P  AE+YIHRIGRTGRAG  G+A + V+  
Sbjct: 294 LGKLRVLVATDVAARGLDIQALPLVINLELPFFAEDYIHRIGRTGRAGLAGRAISFVSPS 353

Query: 353 DIKHIDAIEKLIEKKV 368
           D + +  IE LIE+K+
Sbjct: 354 DDEMLAEIEALIEQKL 369


>gi|323343014|ref|ZP_08083245.1| ATP-dependent RNA helicase DbpA [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463078|gb|EFY08273.1| ATP-dependent RNA helicase DbpA [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 487

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 140/358 (39%), Positives = 219/358 (61%), Gaps = 6/358 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + G+   ++ ++   GY  PT +Q + IP VL   ++   +QTG+GKTASF +P+   
Sbjct: 5   FKNYGIDDSILKSIQYLGYEAPTDVQQEVIPAVLSGKNIVVQSQTGSGKTASFGIPICHQ 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E  +   R P+ L+L PTRELA Q+ ++    G+   L V  L G   FE Q ++L+  
Sbjct: 65  VEWKK---RKPQVLVLAPTRELAIQIQEDLFNLGRFKRLKVEALFGRSSFEKQAQRLKEM 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +L+ TPGR+LDH  R  + +++IE LVIDEAD M +MGFI  I +I + +P   Q LL
Sbjct: 122 THILVATPGRLLDHMARETVDLSHIETLVIDEADEMFNMGFIDQITSIINRIPKKSQKLL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++ +   +++NP+ I++ T S   + I+  +      Y  K ALL+ +L ++
Sbjct: 182 FSATMPERVKDLCTLYIKNPQWIDIETESRVEDRIDERYYI--VDYPDKMALLESVLITE 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFCN K+ V ++ + +E  G  V  +HG ++QR R K+L++FK G  + +VA+
Sbjct: 240 NP-DSSIIFCNTKEQVESVTNFMEDLGCKVDTLHGGMEQRFRTKVLADFKHGLFRYLVAT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           D+AARGLDI DV  V NFDVP   E+Y HR+GRT R  ++GKA T  +  ++K ++ I
Sbjct: 299 DVAARGLDIDDVSLVVNFDVPENTESYTHRVGRTARVDKYGKAVTFASPYEMKFMNLI 356


>gi|319949507|ref|ZP_08023558.1| DEAD/DEAH box helicase [Dietzia cinnamea P4]
 gi|319436821|gb|EFV91890.1| DEAD/DEAH box helicase [Dietzia cinnamea P4]
          Length = 499

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 146/375 (38%), Positives = 213/375 (56%), Gaps = 19/375 (5%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +LG+ P++V A+ + G      IQ  T+PL L   D+ G A+TG GKT  F +P+L  + 
Sbjct: 21  ELGVRPEIVTALAERGITHTFAIQELTLPLALAGSDLIGQARTGMGKTYGFGVPLLHRIS 80

Query: 65  KGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYN---------LTVALLIGGIPF 112
            G A   +   PR L++ PTREL  QV  + +                L V  + GG P+
Sbjct: 81  TGEATRELDGTPRALVIVPTRELCLQVTQDLKIAATGLTASTGSGTRPLKVLAIYGGTPY 140

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E Q + LE+G DV++ TPGR+LD  N+ KL++  +E LV+DEAD MLD+GF P I+ +  
Sbjct: 141 EQQTEALEKGVDVVVGTPGRLLDLANQSKLVLGKVEALVLDEADEMLDLGFHPDIEKLLR 200

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE---TIEHCFVATYAQYS 229
           +VP  RQT+LFSATM   +  ++  FL  P  I      S A    T +H +    A   
Sbjct: 201 MVPEKRQTMLFSATMPGPIITLARTFLTKPTHIRAEAADSGATHENTTQHVY---RAHSL 257

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            K  ++ ++LQ++      +IFC  K+    L   L ++GF V AIHG++ Q +R K L 
Sbjct: 258 DKPEVVARILQAEGRGAT-MIFCRTKRTAQKLADDLAERGFRVGAIHGDLGQGAREKSLK 316

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+ G + ++VA+D+AARG+D+ DV HV N+  P   + Y+HRIGRTGRAGR G A TLV
Sbjct: 317 AFRSGDVDVLVATDVAARGIDVDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGVAVTLV 376

Query: 350 AKEDIKHIDAIEKLI 364
             +D+     I+K +
Sbjct: 377 DWDDLPRWGLIDKAL 391


>gi|300853611|ref|YP_003778595.1| putative ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300433726|gb|ADK13493.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 496

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 133/363 (36%), Positives = 214/363 (58%), Gaps = 6/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  LS  ++ ++   GY  P+ +Q K IPL+ +  D+   +QTG+GKTA+F +P  
Sbjct: 19  LEFKDFALSEDILKSIEKLGYKNPSQVQEKVIPLIFKNKDIIVKSQTGSGKTAAFAIP-- 76

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I EK     + P+ L+L PTRELA Q+ ++F   G+   +    + G  P   Q K+L+
Sbjct: 77  -ICEKIELEEKNPQVLVLAPTRELALQIKEDFYDIGRFKRINCTAIFGKEPITTQIKELK 135

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V++ TPGR LDH  +  L +  I+ L+IDEAD ML+MGFI  ++ +   +P  R T
Sbjct: 136 QRTHVIVGTPGRTLDHIEKDTLSLKKIQYLIIDEADEMLNMGFIDQVKAVLDKLPKNRVT 195

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  E+ K+   ++ NP  +E++        I   +    A   KK  LL +L+ 
Sbjct: 196 LLFSATIPQEILKLCAAYMNNPINVEIDAEDPVINRINQIYYQIEAY--KKFDLLNKLVY 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +Q   ++ +IFC  KKNV +L   ++ +G+S   +HG + Q  R+ ++  FK G    +V
Sbjct: 254 TQRP-ESSMIFCRTKKNVEDLVLQMKGKGYSCSGLHGGMLQSERIDVMKRFKRGEFIFLV 312

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+D+ ++ H+ N+D+P   E+Y+HRIGRTGRAG+ G A T V  ++ + ++ I
Sbjct: 313 CTDVAARGIDVENITHIINYDIPMEKESYVHRIGRTGRAGKSGTAITFVTPKEYRFLEEI 372

Query: 361 EKL 363
           EK 
Sbjct: 373 EKF 375


>gi|206971476|ref|ZP_03232426.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|206733461|gb|EDZ50633.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
          Length = 458

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 66  KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFIM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|126434048|ref|YP_001069739.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           JLS]
 gi|126233848|gb|ABN97248.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. JLS]
          Length = 507

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 146/373 (39%), Positives = 219/373 (58%), Gaps = 12/373 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LG+  ++  A+ + G  +P  IQ  T+P+ L   D+ G A+TG GKT +F +P+L
Sbjct: 10  MTFASLGVRDEICRALAEEGIHQPFAIQELTLPMALAGDDLIGQARTGMGKTYAFGVPLL 69

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFE---KY--GKNYNLTVALLIGGIP 111
               T  EK  + +  PR LI+ PTREL  QV  +     KY    +  L+V  + GG P
Sbjct: 70  QRVTTDTEKELSGI--PRALIVVPTRELCLQVHSDLSLAAKYLTAGDRKLSVVSIYGGRP 127

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q + L +GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+ I 
Sbjct: 128 YEPQIESLRKGADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERIL 187

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
              P TRQ +LFSATM D +  ++  F+  P  I   +P S+A        A  A    K
Sbjct: 188 RQTPDTRQAMLFSATMPDPIITLARTFMNQPTHIRAESPQSSATHDTTAQFAYRAHALDK 247

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             ++ ++LQ+ D     +IF   K+    +   L ++GF V A+HG++ Q +R K L +F
Sbjct: 248 VEMVSRILQA-DGRGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQGAREKALKSF 306

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++VA+D+AARG+DI D+ HV NF +P   + Y+HRIGRTGRAG+ G A TLV  
Sbjct: 307 RTGEVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGVAVTLVDW 366

Query: 352 EDIKHIDAIEKLI 364
           +++     I+K +
Sbjct: 367 DELPRWSMIDKAL 379


>gi|33865454|ref|NP_897013.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. WH 8102]
 gi|33632623|emb|CAE07435.1| probable ATP-dependent RNA helicase DeaD [Synechococcus sp. WH
           8102]
          Length = 598

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 138/371 (37%), Positives = 219/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G S  ++  + D GY +P+PIQ    P ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 47  FDGFGFSEALLKTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L  G+   + P+ L+L PTRELA QVAD+F+ Y   + +L V  + GG  F +Q   L R
Sbjct: 107 LASGQ---KTPQALVLAPTRELAMQVADSFKAYSAGHPHLKVLAVYGGTDFRSQINTLRR 163

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR++DH  +G L  + +  LV+DEAD ML MGFI  ++ I   +P  RQ +
Sbjct: 164 GVDVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILEQLPQERQVV 223

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++S+ +L++P  + + T     + I    +     +  K   LQ++L +
Sbjct: 224 LFSATMPPEIRRLSKRYLKDPAEVTIRTKDQEGKRIRQRSITVPMPH--KLEALQRVLDA 281

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  IIF   K   + +  +LE  G  V  ++G++ Q  R + +   + G++ ++VA
Sbjct: 282 CGG-EGVIIFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVA 340

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N+D+P  +E Y+HRIGRTGRAGR G+A   V   + + I+ +E
Sbjct: 341 TDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPRERRFINNLE 400

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 401 RATGQPIEAME 411


>gi|254172736|ref|ZP_04879410.1| cold-shock deAd box protein a [Thermococcus sp. AM4]
 gi|214032892|gb|EEB73720.1| cold-shock deAd box protein a [Thermococcus sp. AM4]
          Length = 392

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 146/381 (38%), Positives = 223/381 (58%), Gaps = 11/381 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           M F +LGLS   + AV   G+  PT IQ + IP +L+   D+ G +QTGTGKTA+F LP+
Sbjct: 1   MSFEELGLSESSLEAVKRKGFETPTDIQREVIPRLLEGDVDIIGQSQTGTGKTAAFALPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  ++     V+    +IL PTRELA QVAD  +       + V  + GG P   Q + L
Sbjct: 61  IEAIDPKEKTVQ---AIILTPTRELALQVADEIKSLRGKKRVYVYAIYGGQPIGPQIRAL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG  V++ TPGR+LDH NRG L ++++   V+DEADRMLDMGF+  I+ I    P  ++
Sbjct: 118 ERGVHVVVGTPGRVLDHLNRGTLDLSSVRFFVLDEADRMLDMGFVDDIEEIMRRAPEEKR 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM   +  +++ +++NP+ + V+      E ++  +V      ++K   L+++L
Sbjct: 178 ILMFSATMPMGILLLAKKYMRNPEVVLVSRDEIVPEMVDQEYVEVLP--ARKYEKLKEVL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +       GIIFC+ K+    L   L + GF   A++G++ Q +R +  + FKEG I ++
Sbjct: 236 EEG---FYGIIFCHTKRETRELSERLRRDGFRADALNGDMSQAARERTFNRFKEGKINVL 292

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ ++ HV N+ +P   E YIHRIGRTGR G+ GKA T +   +I     
Sbjct: 293 VATDVAARGLDVREISHVINYSLPMNPEQYIHRIGRTGRMGKRGKAITFLEPGEIGRFRG 352

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           I +  + +V+     LS   P
Sbjct: 353 IAR--KARVEVRRSHLSERIP 371


>gi|296136685|ref|YP_003643927.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
 gi|295796807|gb|ADG31597.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
          Length = 666

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 143/371 (38%), Positives = 221/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL   ++ A+ D GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L  
Sbjct: 9   FAELGLPEPLLQALRDVGYETPSPIQAATIPPLLAGRDVLGQAQTGTGKTAAFALPILAK 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++      R  + L+L PTRELA QVA+ F +Y  +     V  + GG  +  Q   L+R
Sbjct: 69  ID---CNARHTQALVLAPTRELAIQVAEAFARYATHLPGFNVLPIYGGQSYVPQLASLKR 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH  RG L ++ +  +V+DEAD ML MGFI  +++I    P  RQ  
Sbjct: 126 GAHVVVGTPGRIIDHLERGTLKLDQLAHMVLDEADEMLRMGFIDDVESILKKTPPQRQVA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P+ I +   ++TA  I+  +      +  K   L ++L+ 
Sbjct: 186 LFSATMPSAIRRIAQTYLRDPQEITIKAATTTATHIQQRYWMVSGLH--KLDALTRILEV 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  IIF   K+    L   L  +GF+  A++G++ Q  R +++   K+G + ++VA
Sbjct: 244 -EPFEGMIIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A   V   +   + AIE
Sbjct: 303 TDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAILFVTPRERHLLRAIE 362

Query: 362 KLIEKKVDWLN 372
           +   + +  + 
Sbjct: 363 RATRQPITQMQ 373


>gi|22652665|gb|AAN03793.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 309

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 140/312 (44%), Positives = 199/312 (63%), Gaps = 4/312 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ++ IP V++  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G + +    R L+L PTRELAAQV  + EKY KN  LT  ++ GG+    Q ++L
Sbjct: 61  ERLSNGPKRKFNQVRALVLTPTRELAAQVHGSVEKYSKNLPLTSDVVFGGVKVNPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DVL+ TPGR+LD  N+  +  + +EILV+DEADRMLDMGFI  I+ I + +   RQ
Sbjct: 121 RRGVDVLVATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILAKLHKNRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++++++  +++P  I V   ++TAET+E           +K  +L +L+
Sbjct: 181 DLLFSATFSDEIRQLAKGLVKDPVEISVAKRNTTAETVEQSVYVM--DKGRKPKVLTKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  K  ++F   K     L  +LE++G S  AIHGN  Q +R K L+NFK G ++++
Sbjct: 239 KDND-WKQVLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVL 297

Query: 300 VASDLAARGLDI 311
           VA+D+AARGLDI
Sbjct: 298 VATDIAARGLDI 309


>gi|297192239|ref|ZP_06909637.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151271|gb|EFH31061.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 539

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 145/390 (37%), Positives = 223/390 (57%), Gaps = 21/390 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F DLG+ P+   A+   G + P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L  
Sbjct: 25  FRDLGILPETAEALEAVGILSPFPIQEMTLPVALSGSDVIGQAKTGTGKTLGFGLPLLER 84

Query: 61  -TI---LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            T+   +E GRA+       P+ L++ PTREL  QV ++    GK  N+ V  + GG  +
Sbjct: 85  VTVPADVEAGRAKPEQLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAY 144

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E Q + L++G DV++ TPGR+LD   + KL ++++  LV+DEAD MLD+GF+P ++ I  
Sbjct: 145 EPQVEALKKGVDVIVGTPGRLLDLAGQRKLDLSHVRALVLDEADEMLDLGFLPDVEKIIQ 204

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KK 231
            +P  RQT+LFSATM   +  ++  ++  P  I   +P     T+ +     Y  +S  K
Sbjct: 205 QLPAKRQTMLFSATMPGAVIGLARRYMSQPTHISATSPDDEGATVRNTTQRVYRAHSMDK 264

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             ++ ++LQ++      +IFC  K+   ++   L ++GF+  A+HG++ Q +R + L  F
Sbjct: 265 PEMVSRILQAEG-RGLAMIFCRTKRTAADIADQLAQRGFASGAVHGDLGQGAREQALRAF 323

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAG  G A TLV  
Sbjct: 324 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGASGTAVTLVDW 383

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           +DI     I K +         DL   +PP
Sbjct: 384 DDIPRWQLINKAL---------DLGFPDPP 404


>gi|297565173|ref|YP_003684145.1| DEAD/DEAH box helicase domain-containing protein [Meiothermus
           silvanus DSM 9946]
 gi|296849622|gb|ADH62637.1| DEAD/DEAH box helicase domain protein [Meiothermus silvanus DSM
           9946]
          Length = 538

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 147/390 (37%), Positives = 223/390 (57%), Gaps = 23/390 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F D  L P+V+ A+   G+  PT IQ + IPL L+  DV G A+TGTGKT +F LP+ 
Sbjct: 1   MEFKDFALRPEVLAALEAKGFTTPTAIQAQAIPLALEGRDVLGQARTGTGKTLAFALPIA 60

Query: 61  TILE---KGRARV------RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
             LE   +G +RV      R PR  IL PTRELA QVA        +  L V  + GG  
Sbjct: 61  HKLEAPFRGDSRVASRQRGRPPRAFILTPTRELALQVAGELAWVAPH--LHVLPIYGGTG 118

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           + +Q + L RGADV++ TPGR +D+ N+G L ++++EI V+DEAD ML MGF   ++ + 
Sbjct: 119 YGSQAEGLRRGADVVVATPGRAIDYLNQGILDLSHVEIAVLDEADEMLSMGFEEDVEKLL 178

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
              P +RQT LFSAT+    ++++E ++++P  + VN      E + +  +A  A    +
Sbjct: 179 GATPASRQTFLFSATVPSWAKRLAERYMRDP--VHVNVVKD--EQVSYEELALQAPLQTR 234

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L  ++ +    +  I+F   K  V  L   L+ +G     IHG++ QR R ++L  F
Sbjct: 235 LNTLTDVIFAYAPERT-IVFTRTKAEVDELATGLQARGIGAAPIHGDMSQRERERVLGRF 293

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +EGT  ++VA+D+AARGLDIP+V  V +F +P +AE Y HR GRTGRAGR G+       
Sbjct: 294 REGTDTVLVATDVAARGLDIPEVDLVVHFRLPEKAEPYQHRSGRTGRAGRSGRVILFYGP 353

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
            + + ++ +E  ++++          +NPP
Sbjct: 354 RERRELENLEYAVKRR-------FKRVNPP 376


>gi|313893353|ref|ZP_07826927.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313442122|gb|EFR60540.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 432

 Score =  266 bits (681), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 141/363 (38%), Positives = 222/363 (61%), Gaps = 6/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+  +++ A+   G  +PTPIQ ++IP+V + +DV   AQTGTGKT +F+LP   I
Sbjct: 4   FKTLGVCDELIQALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLP---I 60

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++    V   + LI+ PTREL  Q+AD  ++ G   N+ +  LIGG   EAQ ++L R 
Sbjct: 61  LQRVHTDVHQEQVLIIAPTRELIKQIADEAKEIGAILNVDILPLIGGKTIEAQLQQLGRR 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+LDH  RG L ++ I  +V+DEAD+ML MGF+P I+++ S     RQ LL
Sbjct: 121 PQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIESLISQTDANRQLLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ D+++ +++ ++  P  +       T E+I+        +  +K   L ++++ +
Sbjct: 181 FSATIPDKIRNLAKAYMSKPVSVTAEGKHVTLESIDQRVYMMNPE--EKTERLIKMIE-E 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D     I+FCN+++  V L + L   G ++  +HG++ Q  R +IL +F +   Q++VA+
Sbjct: 238 DNPFLAIVFCNKREGAVRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HV+N+DVP   + YIHRIGRTGRAG  G A T    +D   +  IE+
Sbjct: 298 DIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGVAVTFATPQDESWLRRIER 357

Query: 363 LIE 365
            I+
Sbjct: 358 AIQ 360


>gi|291297189|ref|YP_003508587.1| DEAD/DEAH box helicase domain-containing protein [Meiothermus ruber
           DSM 1279]
 gi|290472148|gb|ADD29567.1| DEAD/DEAH box helicase domain protein [Meiothermus ruber DSM 1279]
          Length = 556

 Score =  266 bits (681), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 145/381 (38%), Positives = 220/381 (57%), Gaps = 14/381 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+   L P+V  A+   G+   TPIQ   IPL L+  DV G A+TGTGKT +F +P+ 
Sbjct: 1   MEFSAFTLRPEVAQAIQAKGFTTATPIQAAAIPLALEGKDVLGQARTGTGKTLAFGIPIA 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  R R R PR LIL PTRELA QVA   E    +  LT+  + GG  +  Q + L+
Sbjct: 61  NRLDAARERGRAPRALILTPTRELALQVAKELEWLAPH--LTITPIYGGTGYGKQAEALK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR +D+  +  L ++ IEI V+DEAD ML MGF   ++ +    P TRQT
Sbjct: 119 RGTDVVVATPGRAIDYLEQRVLDLSRIEIAVLDEADEMLSMGFEEAVEQLLEATPPTRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+    +++SE + +    I +N      E I +  VA  A    + ++L  LL 
Sbjct: 179 LLFSATLPTWARRLSERYQKAA--IHINVIKD--EAISYEEVAIQAPIHNRLSVLSDLLF 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +    +  I+F + K    +L   LE +  S   IHG++ Q  R +++  F+ G + ++V
Sbjct: 235 AYAPERT-IVFTSTKAECNDLALGLESRAHSAAPIHGDMGQIDRERVMERFRSGAVSVLV 293

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP+V  V ++ +P++ E+Y+HR GRTGRAGR GK   L    + + ++ +
Sbjct: 294 ATDVAARGLDIPEVDLVVHYRLPDQNESYLHRSGRTGRAGRSGKVVILYGPREKRELETL 353

Query: 361 EKLIEKKVDWLNGDLSSLNPP 381
           E+ +++       +   +NPP
Sbjct: 354 ERELKR-------NFKRVNPP 367


>gi|196039972|ref|ZP_03107275.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|196029231|gb|EDX67835.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
          Length = 458

 Score =  266 bits (681), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 66  KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|146308580|ref|YP_001189045.1| ATP-dependent RNA helicase RhlB [Pseudomonas mendocina ymp]
 gi|145576781|gb|ABP86313.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 482

 Score =  266 bits (681), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 225/373 (60%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++T 
Sbjct: 96  FHDFKLAPELMHAIHDLGFPYCTPIQAGVLGYTLKGQDAIGRAQTGTGKTAAFLISIITQ 155

Query: 62  ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L+    + R    PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K+
Sbjct: 156 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAVALTKYTKLNVMSFVGGMDFDKQLKQ 215

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 216 LESRFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPMK 275

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T+++  +++ +  NP  +E+   +  ++T+E    A  +  S K  LL
Sbjct: 276 GDRQTLLFSATFTEDVMNLAKQWTVNPAIVEIEPENVASDTVEQHVYAVAS--SDKYKLL 333

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ +Q+     ++F N+K  V  +   L + G S   + G++ Q  R+K+L  F+ G 
Sbjct: 334 YNLV-TQNAWDRVMVFANRKDEVRRIEERLTRDGVSAAQMSGDVPQHKRIKVLEGFRAGH 392

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ +  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 393 IRVLVATDVAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGSSGTSISFAGEDDAF 452

Query: 356 HIDAIEKLIEKKV 368
            +  IE LI +K+
Sbjct: 453 ALPPIEALIGRKI 465


>gi|326940167|gb|AEA16063.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 455

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 143/364 (39%), Positives = 222/364 (60%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP   
Sbjct: 3   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLP--- 59

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
           ILEK        + LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 60  ILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 297 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356

Query: 361 EKLI 364
           EK +
Sbjct: 357 EKTL 360


>gi|295675110|ref|YP_003603634.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
 gi|295434953|gb|ADG14123.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 467

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 150/392 (38%), Positives = 222/392 (56%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L P ++  +   GYV+ TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 11  FSELPLPPAMLANLTQLGYVEMTPIQAASLPIALGGHDLIAQAKTGSGKTAAFSLALLAR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+   AR    + ++L PTRELA QV     +  +   N+ V  L GG P   Q   LE 
Sbjct: 71  LD---ARKFDTQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH  RG L++  +  LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 128 GAHVVVGTPGRIMDHLERGTLVLQALNTLVLDEADRMLDMGFFDDIAKVARQCPKERQTL 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K+S+ FL+NPK +++      ++  +  +  T  +      LL    + 
Sbjct: 188 LFSATYPEGIAKLSQQFLRNPKEVKLAERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRP 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 248 VST----IAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E + HRIGRTGRA + G A +L + +++  +  IE
Sbjct: 304 TDVAARGLDIAQLEAVINVDVTPDPEVHTHRIGRTGRADQEGWALSLASMDEMGRVGGIE 363

Query: 362 KLIEKKVDWLN-GDLSS-----LNPPLEKIDI 387
           ++ ++ V+W    +L +     L PP+E + I
Sbjct: 364 QVHKRDVEWHKLAELKAASNDPLLPPMETLQI 395


>gi|167586824|ref|ZP_02379212.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
          Length = 396

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 143/367 (38%), Positives = 216/367 (58%), Gaps = 34/367 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP +  
Sbjct: 36  FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 95

Query: 63  L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99
                               G  R R P+       L+L PTRELA QV      YGK+ 
Sbjct: 96  FAQLQKAQAQQPRAPREPSNGDRRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 155

Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L    ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRM
Sbjct: 156 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 215

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214
           LDMGFI  I+ I    P +RQT+LFSAT+  ++  ++   L++P+RIE+     + ++ A
Sbjct: 216 LDMGFIEDIETIVDATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIA 275

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +T+ +           K  LL  LL+  + +   IIF   K +   L   L   GF   A
Sbjct: 276 QTVHYV-----DDRDHKDRLLDHLLR-DNALDQAIIFTATKIDADQLAGRLADAGFESAA 329

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIG
Sbjct: 330 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 389

Query: 335 RTGRAGR 341
           RTGRAGR
Sbjct: 390 RTGRAGR 396


>gi|307245436|ref|ZP_07527524.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307247549|ref|ZP_07529593.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307254390|ref|ZP_07536228.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256597|ref|ZP_07538378.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307258849|ref|ZP_07540581.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307261031|ref|ZP_07542713.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|307263212|ref|ZP_07544832.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|306853777|gb|EFM85994.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306855914|gb|EFM88073.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306862689|gb|EFM94645.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865007|gb|EFM96909.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306867200|gb|EFM99056.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306869333|gb|EFN01128.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306871429|gb|EFN03153.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 593

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 136/347 (39%), Positives = 218/347 (62%), Gaps = 7/347 (2%)

Query: 24  PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRE 83
           P+PIQ +TIP +L   DV G+AQTG+GKTA+F LP+L  ++  +   R P+ L++ PTRE
Sbjct: 3   PSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLLAQIDPTK---RHPQMLVMAPTRE 59

Query: 84  LAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142
           LA QVAD  E++ KN   + V  + GG  ++ Q + L++G+ V++ TPGRILDH  RG L
Sbjct: 60  LAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRALKQGSQVVVGTPGRILDHIRRGTL 119

Query: 143 LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNP 202
            ++ ++ +V+DEAD ML MGFI  ++ + + +P   QT LFSATM + +++++  F+Q+P
Sbjct: 120 DLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRITRRFMQDP 179

Query: 203 KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLC 262
           + +++     +A  I   +      + K  ALL+ L    +     IIF   K   +++ 
Sbjct: 180 QEVKIQATQRSAPDITQSYWLVNG-FRKNDALLRFL--EVEEFDAAIIFTRTKTGTIDIT 236

Query: 263 HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322
              E+ G+   A++G++ Q++R + L   K G + ++VA+D+AARG+DI  +  V NFD+
Sbjct: 237 ELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAARGIDIERISLVVNFDI 296

Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           P  AE+Y+HRIGRTGRAGR G+A   V   + + +  IE L++K +D
Sbjct: 297 PLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKPID 343


>gi|294340821|emb|CAZ89216.1| Cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
           [Thiomonas sp. 3As]
          Length = 666

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 143/371 (38%), Positives = 221/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL   ++ A+ D GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L  
Sbjct: 9   FAELGLPEPLLQALRDVGYETPSPIQAATIPPLLAGRDVLGQAQTGTGKTAAFALPILAK 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++      R  + L+L PTRELA QVA+ F +Y  +     V  + GG  +  Q   L+R
Sbjct: 69  ID---CNARHTQALVLAPTRELAIQVAEAFARYAAHLPGFNVLPIYGGQSYVPQLASLKR 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH  RG L ++ +  +V+DEAD ML MGFI  +++I    P  RQ  
Sbjct: 126 GAHVVVGTPGRIIDHLERGTLKLDQLAHMVLDEADEMLRMGFIDDVESILKKTPPQRQVA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P+ I +   ++TA  I+  +      +  K   L ++L+ 
Sbjct: 186 LFSATMPSAIRRIAQTYLRDPQEITIKAATTTATHIQQRYWMVSGLH--KLDALTRILEV 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  IIF   K+    L   L  +GF+  A++G++ Q  R +++   K+G + ++VA
Sbjct: 244 E-PFEGMIIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A   V   +   + AIE
Sbjct: 303 TDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAILFVTPRERHLLRAIE 362

Query: 362 KLIEKKVDWLN 372
           +   + +  + 
Sbjct: 363 RATRQPITQMQ 373


>gi|119469628|ref|ZP_01612497.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7]
 gi|119446875|gb|EAW28146.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7]
          Length = 425

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 152/417 (36%), Positives = 239/417 (57%), Gaps = 28/417 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F+D  ++P+VV  + + G+   TPIQ K +P +    D+ G AQTGTGKT +F+      
Sbjct: 11  FSDFAIAPEVVAGLTENGFEYCTPIQAKCLPFICDGRDIAGQAQTGTGKTLAFLTATCHR 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  +A  + PR LI+ PTRELA Q+  + +    + NL + L+ GG  +E Q  +LE+
Sbjct: 71  LLQSSKAPSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGEDYEKQRAQLEK 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQ 179
           G D+LI T GR++D + +G   +N IE++V+DEADRM D+GFI  I+ +   +P T  R 
Sbjct: 131 GVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMFDRMPDTSKRL 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQL 238
            LLFSAT++  +Q+++   + NP+ +++     T + I E  F   +     K  LL  L
Sbjct: 191 NLLFSATLSYRVQELAFEHMTNPEHVQIEPDVKTGKRIKEELF---HPSQEDKIKLLLTL 247

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ +   K  I+F N K +   +   L+  G  V  + G+++Q+ R  IL+ F +G +  
Sbjct: 248 IEEEWPDK-AIVFANTKHSCETVYAWLKADGHRVGMLTGDVNQKKRQSILAQFSKGELDF 306

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGL IP+V HVFNFD+P+  E+Y+HRIGRTGRAG  G A +   ++   ++ 
Sbjct: 307 LVATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTGRAGASGHAISFACEQYAYNLH 366

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            IE+ IE  +   + D ++L   L K             PI Q       RK+NYS+
Sbjct: 367 EIEEYIEHSIPLSHYDKAALLDDLTK-------------PIIQ-------RKRNYSN 403


>gi|301110278|ref|XP_002904219.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262096345|gb|EEY54397.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 758

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 131/350 (37%), Positives = 210/350 (60%), Gaps = 1/350 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL LS  ++ A+   G+ KPTPIQ + IP+ L   D+C  AQTG+GKTA+F+LP+L  
Sbjct: 133 FADLKLSRPIMRAISHIGFEKPTPIQQRAIPIALTGKDICASAQTGSGKTAAFLLPILER 192

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    RV+  R +I+ P RELA Q     E+  +  ++T +L +GG+P +AQ  +L   
Sbjct: 193 LQFRSRRVQSTRVMIICPVRELATQCQSMLEQLARFTDITCSLAVGGLPLKAQEAELRNR 252

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV++CTPGR++DH    K + M+++EILV+DEADR+L++GF   +  +  + P  RQT+
Sbjct: 253 PDVVVCTPGRMIDHLRNSKSVHMDDLEILVLDEADRLLELGFTEEVLELVRMCPVQRQTM 312

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT ++ ++ +  ++ P RI  +     A+ +   FV            +   L +
Sbjct: 313 LFSATMTSKVDQLIDLSMKRPVRISTDPLFDMAKHLVQEFVRIRPNREDDREAILLALCT 372

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    N I+F   K +   +       G     +HGN+ QR R++ L  F++GT+ +++ 
Sbjct: 373 RTFRSNTIVFMETKSHAHRMMIIFGLAGIKAAELHGNLQQRERLEALQKFRDGTVDVLLC 432

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +D+AARG+D+  V  V N+++P     Y+HR+GRT RAGR+G+A TL ++
Sbjct: 433 TDIAARGIDVRGVHAVINYEMPKDITTYVHRVGRTARAGRNGRAVTLTSE 482


>gi|282848965|ref|ZP_06258354.1| toxin-antitoxin system toxin component, PIN family [Veillonella
           parvula ATCC 17745]
 gi|282581240|gb|EFB86634.1| toxin-antitoxin system toxin component, PIN family [Veillonella
           parvula ATCC 17745]
          Length = 432

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 140/363 (38%), Positives = 222/363 (61%), Gaps = 6/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+  +++ A+   G  +PTPIQ ++IP+V + +DV   AQTGTGKT +F+LP   I
Sbjct: 4   FKSLGVCDELIIALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLP---I 60

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++    V   + LI+ PTREL  Q++D  ++ G   N+ +  LIGG   EAQ ++L R 
Sbjct: 61  LQRVHTDVHQEQVLIIAPTRELIKQISDEAKELGSILNVDILPLIGGKTIEAQLQQLGRR 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+LDH  RG L ++ I  +V+DEAD+ML MGF+P I+N+ S     RQ LL
Sbjct: 121 PQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLISQTDANRQLLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ D+++ +++ ++  P  +       T E+I+        +  +K   L ++++  
Sbjct: 181 FSATIPDKIRNLAKAYMSKPISVTAEGKHITLESIDQRVYMMNPE--EKTQRLIKMIED- 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D     I+FCN+++  + L + L   G ++  +HG++ Q  R +IL +F +   Q++VA+
Sbjct: 238 DNPFLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HV+N+DVP+  + YIHRIGRTGRAG  G A T    +D   +  IE+
Sbjct: 298 DIAARGIDIEGITHVYNYDVPHDVDYYIHRIGRTGRAGNSGIAVTFATPQDEAWLRRIER 357

Query: 363 LIE 365
            I+
Sbjct: 358 AIQ 360


>gi|188589982|ref|YP_001922621.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251781234|ref|ZP_04824150.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|188500263|gb|ACD53399.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243081681|gb|EES47742.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 526

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 146/368 (39%), Positives = 222/368 (60%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   VV A+ D G+  P+ IQ ++IP+ L+  D+ G AQTGTGKTA++  P+L+ 
Sbjct: 6   FYSLGLKDTVVKAIDDLGFNTPSQIQEESIPVTLEGFDLIGQAQTGTGKTAAYGCPILSR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER- 121
           L          + LIL PTRELA QV D  +K  K     V  + GG   + Q + L + 
Sbjct: 66  LNDTNG----IKALILAPTRELAVQVNDELKKLSKYEKANVLPVYGGESIDRQIRALRKD 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+LD  NR  L +N ++ LV+DEAD ML+MGFI  I+ I S  P  RQTL
Sbjct: 122 NIDIVVGTPGRVLDLINRKILKLNTVDFLVLDEADEMLNMGFIDDIETIISNTPAERQTL 181

Query: 182 LFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSATM   + K+++N+++ + K + +   S T   IE  +     ++  +   L +LL 
Sbjct: 182 LFSATMPAPIAKLAKNYMKADAKHVAIKRSSLTVSKIEQNYFMINNKH--RLEALCRLLD 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D   + IIFC  KK V  L   L+ +G+ V  +HG++ Q  R+  L  FKEG++ L++
Sbjct: 240 -LDNPSSAIIFCRTKKGVDELVEELQGKGYVVEGMHGDMSQVHRLTTLKKFKEGSLNLLI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+D+P   E+Y+HRIGRTGRA R G A++LV+ +++  +  I
Sbjct: 299 ATDVAARGIDVDGITHVINYDLPQDVESYVHRIGRTGRANRTGTAYSLVSPKELGMLKQI 358

Query: 361 EKLIEKKV 368
           +++ +  +
Sbjct: 359 QRVTKSTI 366


>gi|328853252|gb|EGG02392.1| hypothetical protein MELLADRAFT_75483 [Melampsora larici-populina
           98AG31]
          Length = 486

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 234/423 (55%), Gaps = 7/423 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LGL   +  A     +  PTPIQ ++IP  LQ  D+ G+AQTG+GKTA+F LP+L
Sbjct: 59  ITFASLGLIEPLCKACESLNFKTPTPIQTESIPYALQNKDIIGLAQTGSGKTAAFALPVL 118

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L    +        +L PTRELA Q++  F+  G    +   +++GG+   +Q   L 
Sbjct: 119 QSLWDSPSAFF---ACVLAPTRELAYQISQQFDALGSTIGVKTVVIVGGMDMMSQAIALS 175

Query: 121 RGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   V++ TPGR+ DH    K   + N++ L++DEADR+LDM F P I  I  ++P  R+
Sbjct: 176 KRPHVIVATPGRLHDHLEHTKGFSLRNLQFLIMDEADRLLDMDFGPVIDKILKVIPKERK 235

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT ++ K+    L NP ++EV+    T   +   ++  +  +  K   L   L
Sbjct: 236 TYLFSATMTTKVAKLQRASLNNPVKVEVSAKYDTVSALVQTYL--FLPFKHKDTYLV-YL 292

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++ + K+ I+F     +   L   L   GF    +HG + Q +R+  L+ FK G   L+
Sbjct: 293 ANELSGKSLIVFTRTVHDASRLSLILRTLGFPAVPLHGQLSQSARLGALNKFKSGDQSLL 352

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GK+ TLV + D++ +  
Sbjct: 353 VATDVASRGLDIPAVDCVINFDLPTNSKDYIHRVGRTARAGRSGKSITLVTQYDVELLQR 412

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE +I KK++        +    E++  A    AR+   I +    F+R++K+   + S 
Sbjct: 413 IEGVIGKKMNEFEHQKEQVMVLGERVGEAAREVAREMREIERNGNKFNRKRKSGEMKPSK 472

Query: 420 IPL 422
           I +
Sbjct: 473 IKM 475


>gi|228958720|ref|ZP_04120433.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800935|gb|EEM47839.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 458

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 66  KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|229044202|ref|ZP_04191878.1| ATP-dependent RNA helicase [Bacillus cereus AH676]
 gi|229145047|ref|ZP_04273440.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST24]
 gi|228638368|gb|EEK94805.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST24]
 gi|228725143|gb|EEL76424.1| ATP-dependent RNA helicase [Bacillus cereus AH676]
          Length = 458

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 66  KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|154150192|ref|YP_001403810.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Methanoregula boonei 6A8]
 gi|153998744|gb|ABS55167.1| DEAD/DEAH box helicase domain protein [Methanoregula boonei 6A8]
          Length = 532

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 221/369 (59%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL LS ++  A+ + G+ +PTPIQ   IPL+    DV   AQTGTGKT++F +P  
Sbjct: 5   LQFSDLSLSKEIAKAIENMGFEEPTPIQALAIPLIQAGRDVTAQAQTGTGKTSAFGIP-- 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
            ++E   A  R+ + ++L PTRELA Q+A+ F         ++V  + GG P E Q K L
Sbjct: 63  -VIENIDASQRVVQVIVLCPTRELAIQIAEEFSHLLAYLPKISVLPVYGGQPIERQLKAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  ++I TPGR++DH  R  L ++++ ++V+DEAD+MLDMGF   I+ I   VP  RQ
Sbjct: 122 ANGVHIVIGTPGRVMDHLKRRTLSLDHVSMVVLDEADQMLDMGFRDDIELILKRVPQKRQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT+   + ++S+ F   P+ + V     T   IE  ++    +   K   L +++
Sbjct: 182 TLLFSATLPKPIIEISKRFQNRPEFVRVEYQELTVPAIEQSYIEVRDR--DKLDSLCRVI 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D  +  IIFCN K+   +L   +  +G+    +HG++ Q  R +++  F++GTI ++
Sbjct: 240 DVVDP-QLAIIFCNTKRGAEDLAGRIRARGYRAEELHGDMKQSQRDRVMGGFRKGTIDIL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+ DV  V N+DVP   + YIHRIGRTGRAG+ G+A T V   D   +  
Sbjct: 299 IATDVAARGIDVEDVDMVINYDVPQDVDYYIHRIGRTGRAGKSGRAITFVTSRDFTKLRE 358

Query: 360 IEKLIEKKV 368
           I+K I+ ++
Sbjct: 359 IQKYIKVQI 367


>gi|229035098|ref|ZP_04189045.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1271]
 gi|228728283|gb|EEL79312.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1271]
          Length = 481

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 133/362 (36%), Positives = 220/362 (60%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  LS +V  A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +++K+S  ++  P  IE+     T + IEH       +  +K +LL+ +   +
Sbjct: 183 FSATLPKDVEKLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDITMIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|218231258|ref|YP_002367146.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228939601|ref|ZP_04102185.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228972459|ref|ZP_04133068.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979080|ref|ZP_04139429.1| ATP-dependent RNA helicase [Bacillus thuringiensis Bt407]
 gi|218159215|gb|ACK59207.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228780666|gb|EEM28884.1| ATP-dependent RNA helicase [Bacillus thuringiensis Bt407]
 gi|228787281|gb|EEM35251.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820093|gb|EEM66134.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 458

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 143/364 (39%), Positives = 222/364 (60%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP   
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLP--- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
           ILEK        + LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 63  ILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|317474632|ref|ZP_07933906.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316909313|gb|EFV30993.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 644

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 142/384 (36%), Positives = 233/384 (60%), Gaps = 10/384 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++ 
Sbjct: 4   FEELGVSPEIRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLIQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            +       R+P++LIL PTREL  Q+A +   Y K  + L V  + GG   E+Q + L+
Sbjct: 64  QIN---VNNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLRVLPVYGGSSIESQIRALK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  + ++ I+ +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILADVPQERNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+ ++S+ +L N K I +   + +   ++H     +A+   K A L++++ 
Sbjct: 181 LLFSATMSPEITRISKKYLHNAKEITIGRKNESTSNVKHVVFTVHAK--DKYAALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+V
Sbjct: 239 YYPQIY-GIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E++I KK  ++ G++ +     EK
Sbjct: 358 ERIIGKK--FIQGEMPTGKQICEK 379


>gi|308175626|ref|YP_003922331.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens
           DSM 7]
 gi|307608490|emb|CBI44861.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens
           DSM 7]
          Length = 475

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 138/363 (38%), Positives = 219/363 (60%), Gaps = 6/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  +S  +  A+    Y +PT +Q + IP  LQ+ D+   +QTG+GKTA+F +P   
Sbjct: 3   EFKDFSISLDIARALEGLQYTEPTEVQRRVIPAALQKKDLVVKSQTGSGKTAAFGIP--- 59

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I E        P+ LIL PTRELAAQ+ ++    G+   +    + G   F+ Q  +L++
Sbjct: 60  ICELADWEENKPQALILTPTRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQKTELKQ 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + V+  TPGR+LDH  +G L ++ +  +VIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 120 KSHVVCGTPGRVLDHIEKGTLPLDRLAYVVIDEADEMLNMGFIEQVEAIIQHLPKNRVTM 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ D+++K+S  ++++P+ IEV     T + IEH FV T A    K +LL+ +L +
Sbjct: 180 LFSATLPDDVEKLSRTYMKDPELIEVKAEGLTTKDIEH-FV-TRAAEEDKSSLLRDVLIT 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++   + IIFC  K+ V+ L   L++ G+    IHG + Q  R  +++ FK G  + ++A
Sbjct: 238 ENP-DSCIIFCRTKERVIQLTDELDRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLIA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++  V N+D+P   E+Y+HR GRTGRAG  G+A T V   + + ++ IE
Sbjct: 297 TDVAARGIDIENISLVINYDIPLEKESYVHRTGRTGRAGHRGRAITFVTPSESRFLNDIE 356

Query: 362 KLI 364
             I
Sbjct: 357 TYI 359


>gi|218134053|ref|ZP_03462857.1| hypothetical protein BACPEC_01943 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991428|gb|EEC57434.1| hypothetical protein BACPEC_01943 [Bacteroides pectinophilus ATCC
           43243]
          Length = 559

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 137/369 (37%), Positives = 229/369 (62%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L +  K++ A+ D G+ + +PIQ K IP+VL+  D+ G AQTGTGKTA++ +PML
Sbjct: 26  LKFEELNVDEKILKAIGDMGFEEASPIQAKAIPVVLEGKDIVGQAQTGTGKTAAYGIPML 85

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++    +++  + ++L PTRELA QVAD   K  K  + + V  + GG     Q K L
Sbjct: 86  QSID---PKLKCVQAVVLCPTRELAIQVADEIRKLAKYMSSIKVLPVYGGQEIVRQIKSL 142

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  +++ TPGR++DH  R  +  + ++++++DEAD MLDMGF   ++ I + +P  RQ
Sbjct: 143 KTGVQIVVGTPGRVMDHMRRKTVKFDKVKMVILDEADEMLDMGFREDMETILTQMPEERQ 202

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++FSATM   +  ++  F  + + I+V     T E IE  +    ++   K  +L +L+
Sbjct: 203 TVMFSATMPKAIMDIARTFQNDAEVIKVVRKELTVENIEQYYFEVRSK--NKDEILSRLI 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  K  ++FCN KK V +L   L+ +G+    IHG++ Q  R +++++F++G  +++
Sbjct: 261 DIYNP-KLSVVFCNTKKQVDDLISELKGRGYFADGIHGDMKQAQRDRVMNDFRKGKTEIL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G AF+ V  ++I  +  
Sbjct: 320 IATDVAARGIDVDDVDIVFNYDLPQDEEYYVHRIGRTGRAGRAGLAFSFVTGKEIYKLKD 379

Query: 360 IEKLIEKKV 368
           IE+  + K+
Sbjct: 380 IERYCKTKI 388


>gi|148549632|ref|YP_001269734.1| ATP-dependent RNA helicase RhlB [Pseudomonas putida F1]
 gi|161378136|ref|NP_743455.2| ATP-dependent RNA helicase RhlB [Pseudomonas putida KT2440]
 gi|148513690|gb|ABQ80550.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 480

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 224/373 (60%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS +++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ +++ 
Sbjct: 93  FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQ 152

Query: 63  LEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L++        +  PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K 
Sbjct: 153 LQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKA 212

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 213 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 272

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT TD++  +++ +  NP  +E+   +  +ET+E    A     S K  LL
Sbjct: 273 SERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAG--SDKYKLL 330

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ +Q+  +  ++F N+K  V  +   L + G +   + G++ Q  R++ L +F+EG 
Sbjct: 331 YNLV-TQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGR 389

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 390 ITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSY 449

Query: 356 HIDAIEKLIEKKV 368
            + AIE L+ +K+
Sbjct: 450 QLPAIEALLGRKI 462


>gi|229091449|ref|ZP_04222660.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-42]
 gi|228691890|gb|EEL45636.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-42]
          Length = 454

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 66  KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|291514657|emb|CBK63867.1| Superfamily II DNA and RNA helicases [Alistipes shahii WAL 8301]
          Length = 690

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 134/368 (36%), Positives = 221/368 (60%), Gaps = 7/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60
           DF+ LGLS +++ AV   G+  PT IQ  TIP +L   +D+   +QTGTGKTA+F LP+L
Sbjct: 26  DFSALGLSEEMLAAVQAKGFETPTSIQRLTIPRLLSGENDIIAQSQTGTGKTAAFGLPIL 85

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +E  +  V+   ++IL PTRELA Q A+    Y +   L++  + GG     Q ++L 
Sbjct: 86  QQIEPSKEGVQ---SIILVPTRELAVQAAEELLSYNRERRLSITAIYGGAAMSEQLRRLS 142

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+++ TPGR+LDH  RG L ++ +  LV+DEAD ML+MGF+  ++ I       R+ 
Sbjct: 143 RGVDIVVGTPGRVLDHIRRGTLKLDKVRFLVLDEADEMLNMGFVEDVEEIMGHTGEDRRV 202

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + + ++SE +++N + + V +   TA+     +     + + K   + +++ 
Sbjct: 203 LLFSATMPERIIRLSEAYMRNTEVLRVESQHLTADLTNQIYFEV--READKFDAMTRIID 260

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +     GI+FC  K  V  +   L  QG+S   +HG++ Q  R KIL  F++  + ++V
Sbjct: 261 IEPDF-YGIVFCRTKIGVDEVATRLVAQGYSAEGLHGDVSQAQREKILRKFRDKAVNILV 319

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HV N+ +P  +E+Y+HRIGRTGRAG  G A T ++  +++  + +
Sbjct: 320 ATDVAARGIDVSNLSHVINYSLPQDSESYVHRIGRTGRAGNQGTAITFISGAELRRFNWM 379

Query: 361 EKLIEKKV 368
            + I+  +
Sbjct: 380 MRDIKADI 387


>gi|313500476|gb|ADR61842.1| RhlB [Pseudomonas putida BIRD-1]
          Length = 480

 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 224/373 (60%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS +++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ +++ 
Sbjct: 93  FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQ 152

Query: 63  LEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L++        +  PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K 
Sbjct: 153 LQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKA 212

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 213 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 272

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT TD++  +++ +  NP  +E+   +  +ET+E    A     S K  LL
Sbjct: 273 SERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAG--SDKYKLL 330

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ +Q+  +  ++F N+K  V  +   L + G +   + G++ Q  R++ L +F+EG 
Sbjct: 331 YNLV-TQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGR 389

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 390 ITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSY 449

Query: 356 HIDAIEKLIEKKV 368
            + AIE L+ +K+
Sbjct: 450 QLPAIEALLGRKI 462


>gi|254381813|ref|ZP_04997176.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
 gi|194340721|gb|EDX21687.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
          Length = 518

 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 144/377 (38%), Positives = 218/377 (57%), Gaps = 18/377 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F DLG+ P+   A+   G V P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L  
Sbjct: 36  FRDLGIFPETAEALEAVGIVSPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLER 95

Query: 61  ----TILEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                 +E GRA        P+ L++ PTREL  QV ++    GK  N+ V  + GG  +
Sbjct: 96  VIVPADVEAGRATPDQLTDSPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAY 155

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E Q + L++G DV++ TPGR+LD   + KL ++ ++ LV+DEAD MLD+GF+P ++ I +
Sbjct: 156 EPQVEALKKGVDVIVGTPGRLLDLAGQKKLDLSRVKALVLDEADEMLDLGFLPDVEKIIN 215

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI----EHCFVATYAQY 228
            +P  RQT+LFSATM   +  ++  ++  P  I   +P     T+    +H F    A  
Sbjct: 216 YLPPKRQTMLFSATMPGAVIGLARRYMTQPTHIRATSPEGEGVTVANIKQHVF---RAHN 272

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
             K  L+ ++LQ++      +IFC  K+   ++   LEK+GF+  A+HG++ Q +R + L
Sbjct: 273 MDKPELVSRILQAEG-RGLAMIFCRTKRTAADIAEQLEKRGFASGAVHGDLGQGAREQAL 331

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             F+ G + ++V +D+AARG+D+  V HV N+  P   + ++HR+GRTGRAG  G A TL
Sbjct: 332 RAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQAPEDEKTFLHRVGRTGRAGNKGIAVTL 391

Query: 349 VAKEDIKHIDAIEKLIE 365
           V  +DI     I K +E
Sbjct: 392 VDWDDIPRWQLINKALE 408


>gi|289623983|ref|ZP_06456937.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289648770|ref|ZP_06480113.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868972|gb|EGH03681.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 442

 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 218/371 (58%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPAVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               +E  +      R L+L PTRELA QV ++  +Y ++  L+     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A +++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++        ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVD 369
           AIE L  + ++
Sbjct: 358 AIEVLTRQTLE 368


>gi|302345341|ref|YP_003813694.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           melaninogenica ATCC 25845]
 gi|302149991|gb|ADK96253.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           melaninogenica ATCC 25845]
          Length = 573

 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 146/375 (38%), Positives = 226/375 (60%), Gaps = 12/375 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L+  V+ A+ D  + + TP+Q K IP +L+ HDV G+AQTGTGKTA+++LP+L
Sbjct: 1   MYFEDLDLNDNVLDALYDMRFDECTPVQEKCIPEILKGHDVLGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL----TVALLIG--GIPFEA 114
           + L  G         +I+ PTRELA Q+    + +   Y L     VA+  G  G  ++ 
Sbjct: 61  SKLADGGYPESAINCVIMSPTRELAQQIDQGMQGFA--YYLDGVSCVAVYGGNDGNRYDQ 118

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           + K L  GADV+I TPGR + H + G + ++ +   ++DEADRMLDMGF   I  I   +
Sbjct: 119 ELKSLALGADVVIATPGRFISHISLGNVDLSKVSFFILDEADRMLDMGFADDIMTIAKKL 178

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P T QT++FSATM  +++++++  L+NP  I++   S  AE I+      Y   ++K  +
Sbjct: 179 PATCQTIMFSATMPAKIEELAKTLLKNPVEIKLAV-SKPAEKIQQTAYVCYE--TQKMGI 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           ++ + ++ D +K  IIF   K+ V  +  SL +   +   +H ++DQ  R  ++  FK G
Sbjct: 236 IKDIFKAGD-LKRVIIFSGSKQKVKQIAGSLNRMHINCGEMHSDLDQEQRNDVMFKFKSG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I ++VA+D+ +RG+DI D+  V N+DVP+ AE+Y+HRIGRT RA R GKA T V ++DI
Sbjct: 295 QIDVLVATDIVSRGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGKAITFVNEDDI 354

Query: 355 KHIDAIEKLIEKKVD 369
                IE  +EK+V+
Sbjct: 355 YFFQQIESFLEKEVE 369


>gi|319425659|gb|ADV53733.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 481

 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 142/376 (37%), Positives = 226/376 (60%), Gaps = 15/376 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY + T +Q K IPL  +  D+   AQTGTGKTA+F LP  
Sbjct: 1   MKFETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTAAFALP-- 58

Query: 61  TILEKGRARVRMP--------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            +LEK  A + +         R L++ PTRELA QV DN +KY +   L    + GG   
Sbjct: 59  -VLEKLAAEILVNDGNDKPILRALVMTPTRELAIQVCDNIQKYSQFLPLKTIAVYGGANM 117

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q K +E+G D+L+ TPGR+ D   + +L ++++  LVIDEADRMLDMGF+  I+ +  
Sbjct: 118 NPQRKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKR 177

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L+    QT+LFSAT +D ++++++  L  P+ + V   ++ +  ++  +        +K 
Sbjct: 178 LIAPVHQTMLFSATYSDAVKQLAQKMLNEPQWVNVADTTTASTVVQEVY---RVDKRRKA 234

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL +L+  ++  +  ++F + K++  +L   L+  G +    HG+  Q +R ++L +FK
Sbjct: 235 ELLSELV-GRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEDFK 293

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G ++++VA+D+AARGLDI  +  V N ++P  AE+YIHRIGRTGRAG  G+A + V+  
Sbjct: 294 LGKLRVLVATDVAARGLDIQALPLVINLELPFFAEDYIHRIGRTGRAGLAGRAISFVSPS 353

Query: 353 DIKHIDAIEKLIEKKV 368
           D + +  IE LIE+K+
Sbjct: 354 DDEMLTEIEALIEQKL 369


>gi|117921821|ref|YP_871013.1| ATP-dependent RNA helicase DbpA [Shewanella sp. ANA-3]
 gi|117614153|gb|ABK49607.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 479

 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 220/369 (59%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P+++  +   GY + TPIQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 22  MAFSTLKLKPELLENLTTMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             L+  R R++   TL+L PTRELA QVA       +  +N+ V  L GG+P   Q   L
Sbjct: 82  NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSL 138

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH  R +L ++N+ +LV+DEADRML+MGF P +  I    P  RQ
Sbjct: 139 EHGAHIIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQ 198

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +++Q +++  + +P  ++V   +    TIE  F       ++  AL  QLL
Sbjct: 199 TLLFSATFPEQIQSIAKQIMYDPVMVKVAV-THEKSTIEQHFYHLDDDKARMQAL--QLL 255

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 ++ ++FCN K+    +   L   GFSV A+HG+++QR R + L  F   +  ++
Sbjct: 256 LLDRKPESAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  VFN+ V    E +IHRIGRTGRAG  G AFT    +D   I  
Sbjct: 316 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAFTFFDDQDGYKIAL 375

Query: 360 IEKLIEKKV 368
           +E+ +E+ +
Sbjct: 376 LEEYLERDI 384


>gi|326795505|ref|YP_004313325.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326546269|gb|ADZ91489.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 443

 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 145/374 (38%), Positives = 227/374 (60%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L  +V+ +V + G+   + IQ  T+P  L+ +D+ G AQTGTGKTA+F+L M++ 
Sbjct: 63  FHDLNLPDRVLKSVSEMGFEYCSEIQAATLPATLEGYDLIGQAQTGTGKTAAFLLAMVSD 122

Query: 63  -----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                +E+ RAR  M R LI+ PTRELA Q+AD  EK  +N +L V  L+GG+ +E Q +
Sbjct: 123 FLDYPVEEERAR-NMARGLIIAPTRELALQIADEAEKITQNCSLNVISLVGGMSYEKQKR 181

Query: 118 KLE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            LE    D+L+ TPGR+LD     K ++N +E+LV+DEADRML MGFIP +++I  + P 
Sbjct: 182 ALETERVDILVATPGRLLDFARSKKAMLNKVEVLVLDEADRMLSMGFIPDVKSIIRMTPH 241

Query: 177 T--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQT+LFSAT   ++Q ++  +   PK + V    +T + I+       A   +K  +
Sbjct: 242 KERRQTMLFSATFPKDIQNLARQWTYFPKEVSVVPKEATNKNIDQVIYTVEA--DQKWPV 299

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L+ L++  D  +  IIF N++     L   L++   +   + G + Q  R+K L NFK+G
Sbjct: 300 LKSLIED-DGNQRTIIFANRRDETRELYELLKEAKINCAILSGEVSQDKRVKTLKNFKDG 358

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            IQ++VA+D+A RG+ + ++  V N+ +P   E+Y+HRIGRTGR G  GK+ +  +++D 
Sbjct: 359 RIQVLVATDVAGRGIHVDNIELVVNYTLPEDPEDYVHRIGRTGRGGEMGKSVSFASEDDA 418

Query: 355 KHIDAIEKLIEKKV 368
             I  IE ++ +K+
Sbjct: 419 FLIPEIEGVVGEKI 432


>gi|108798364|ref|YP_638561.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
 gi|119867461|ref|YP_937413.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           KMS]
 gi|108768783|gb|ABG07505.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
 gi|119693550|gb|ABL90623.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. KMS]
          Length = 507

 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 219/373 (58%), Gaps = 12/373 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LG+  ++  A+ + G  +P  IQ  T+P+ L   D+ G A+TG GKT +F +P+L
Sbjct: 10  MTFASLGVRDEICRALAEEGIHQPFAIQELTLPMALAGDDLIGQARTGMGKTYAFGVPLL 69

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFE---KY--GKNYNLTVALLIGGIP 111
               T  EK  + +  PR LI+ PTREL  QV  +     KY    +  L+V  + GG P
Sbjct: 70  QRVTTDTEKELSGI--PRALIVVPTRELCLQVHSDLSLAAKYLTAGDRKLSVVSIYGGRP 127

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q + L +GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+ I 
Sbjct: 128 YEPQIESLRKGADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERIL 187

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
              P TRQ +LFSATM D +  ++  F+  P  I   +P S+A        A  A    K
Sbjct: 188 RQTPDTRQAMLFSATMPDPIITLARTFMNQPTHIRAESPQSSATHDTTAQFAYRAHALDK 247

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             ++ ++LQ++      +IF   K+    +   L ++GF V A+HG++ Q +R K L +F
Sbjct: 248 VEMVSRILQAEGRGAT-MIFTRTKRTAQKVADELAERGFKVGAVHGDLGQGAREKALKSF 306

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++VA+D+AARG+DI D+ HV NF +P   + Y+HRIGRTGRAG+ G A TLV  
Sbjct: 307 RTGEVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGVAVTLVDW 366

Query: 352 EDIKHIDAIEKLI 364
           +++     I+K +
Sbjct: 367 DELPRWSMIDKAL 379


>gi|326491859|dbj|BAJ98154.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 786

 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 154/390 (39%), Positives = 221/390 (56%), Gaps = 18/390 (4%)

Query: 2   DFADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           DF +   + P V+  V +  + KPTPIQ ++ P+     D+  IA+TG+GKT SF LP+L
Sbjct: 368 DFKEASTIFPSVIMKVTEK-FTKPTPIQAQSWPIARSGRDIIAIAETGSGKTLSFGLPIL 426

Query: 61  T-ILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             IL K  +     R P  L+L PTRELA Q AD  E  G    L    + GG P E   
Sbjct: 427 AQILSKQNSTSGGKRTPLMLVLAPTRELAMQTADVCEAAGATCGLKTLCVYGGSPREGNV 486

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ G D+LI TPGR++D    G  +++ ++ LV+DEADRMLDMGF P I+ I + VP 
Sbjct: 487 KALKAGVDLLIATPGRLIDLLQEGVAVLDKVQHLVLDEADRMLDMGFEPAIRQIIAAVPK 546

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEV-------NTPSSTAETIEHCFVATYAQYS 229
           TRQTL+FSAT    +Q ++  FL+ P ++ +       + P++     +   V TY    
Sbjct: 547 TRQTLMFSATWPLSIQSLANEFLREPAKVTIGVKQEQSDGPTANRRVTQIVEVMTYRDKE 606

Query: 230 KKCALLQQLLQS-QDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
            +   LQ LL     + KN I +F   KK    +  +L ++G+ V  IHG+  Q  R K 
Sbjct: 607 HR---LQDLLHKLHKSRKNRILVFALYKKEAERIEQTLRRKGWKVQGIHGDKSQALRSKA 663

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           + +F+ G   L+VA+D+AARGLDIPDV +V N+  P   E+Y+HRIGRTGRAG+ G A+T
Sbjct: 664 IESFRSGEEPLLVATDVAARGLDIPDVEYVINYTFPLTIEDYVHRIGRTGRAGKTGTAYT 723

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
               ED  H   +++++ +    +  DL S
Sbjct: 724 FFTDEDKTHAGELQQVLREANQDIPQDLMS 753


>gi|320164743|gb|EFW41642.1| DEAD box ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC
           30864]
          Length = 594

 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 155/411 (37%), Positives = 231/411 (56%), Gaps = 15/411 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  LG+ P +V A    G+  PTPIQ ++IP+ L   D+ G+A+TG+GKTASF LP+L  
Sbjct: 148 FQALGIVPSLVEACSRMGFKAPTPIQRQSIPVALTGRDIIGLAETGSGKTASFALPVLQK 207

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEK +        LIL PTRELA Q+++ FE  G    +   +++GG+    Q   L +
Sbjct: 208 LLEKPQPLF----ALILTPTRELAYQISEQFEALGSTIGVKCCVIVGGMDMTTQAIALSK 263

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +LI TPGRI+DH    K     ++ L++DEADR+L+M F   +  I   +P  R T 
Sbjct: 264 KPHILIATPGRIVDHLENTK---GYLKFLIMDEADRILNMDFEEEVDKILKAIPKERNTY 320

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SATMT ++ K+    L+NP +IEV T   T  T+   ++   A++ K C L   L  +
Sbjct: 321 LYSATMTSKVAKLQRASLRNPVKIEVATKYQTVGTLVQQYLFIPARF-KDCYLTYAL--N 377

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q    + IIF     N   +   L   GF    +HG + Q  R+  L+ FKE +  ++VA
Sbjct: 378 QLAGNSTIIFTMTCANAQRVALMLRNLGFPAIPLHGQLTQPKRLGALNKFKEQSRSILVA 437

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR G++ T+V + D++    IE
Sbjct: 438 TDVASRGLDIPHVDLVINYDIPTHSKDYIHRVGRTARAGRSGRSITMVTQYDVELFQRIE 497

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQH----NHARKNNPIPQKSTGFDR 408
           +LI KK++    +   +   LE+   AQ         +N+P   K  G DR
Sbjct: 498 QLINKKMELYESEEEQVLMLLERTSEAQRMAITQMRDENDPRNGKRRGHDR 548


>gi|218131753|ref|ZP_03460557.1| hypothetical protein BACEGG_03374 [Bacteroides eggerthii DSM 20697]
 gi|217986056|gb|EEC52395.1| hypothetical protein BACEGG_03374 [Bacteroides eggerthii DSM 20697]
          Length = 644

 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 142/384 (36%), Positives = 233/384 (60%), Gaps = 10/384 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++ 
Sbjct: 4   FEELGVSPEIRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLIQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            +       R+P++LIL PTREL  Q+A +   Y K  + L V  + GG   E+Q + L+
Sbjct: 64  QIN---VNNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLRVLPVYGGSSIESQIRALK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  + ++ I+ +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILADVPQERNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+ ++S+ +L N K I +   + +   ++H     +A+   K A L++++ 
Sbjct: 181 LLFSATMSPEIARISKKYLHNAKEITIGRKNESTSNVKHVVFTVHAK--DKYAALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+V
Sbjct: 239 YYPQIY-GIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E++I KK  ++ G++ +     EK
Sbjct: 358 ERIIGKK--FIQGEMPTGKQICEK 379


>gi|329956340|ref|ZP_08296937.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
 gi|328524237|gb|EGF51307.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
          Length = 645

 Score =  266 bits (679), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 143/384 (37%), Positives = 232/384 (60%), Gaps = 10/384 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++ 
Sbjct: 4   FEELGVSPEIRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLIQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            +       R+P++LIL PTREL  Q+A +   Y K  + L V  + GG   E+Q + L+
Sbjct: 64  QIN---VNNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLRVLPVYGGSSIESQIRALK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  + ++ I+ +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILADVPQERNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+ ++S+ +L N K I +   +     ++H     +A+   K A L++++ 
Sbjct: 181 LLFSATMSPEIARISKKYLHNAKEITIGRKNEGTNNVKHVVFTVHAK--DKYAALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L ++G++  A+HG + Q  R  ++  F+   +QL+V
Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADALHGELSQAQRDAVMQKFRIRNLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E++I KK  ++ G++ +     EK
Sbjct: 358 ERIIGKK--FIQGEMPTGKQICEK 379


>gi|229100254|ref|ZP_04231145.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-29]
 gi|229115941|ref|ZP_04245337.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-3]
 gi|228667530|gb|EEL22976.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-3]
 gi|228683149|gb|EEL37136.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-29]
          Length = 450

 Score =  266 bits (679), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 140/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 66  KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|52143016|ref|YP_083814.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
 gi|51976485|gb|AAU18035.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
          Length = 450

 Score =  266 bits (679), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 223/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 66  KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T  TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|303283774|ref|XP_003061178.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457529|gb|EEH54828.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 456

 Score =  266 bits (679), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 147/371 (39%), Positives = 222/371 (59%), Gaps = 13/371 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  LG+  ++  A  D G+  P+ IQ  +IP  LQ  DV G+AQTG+GKT +F LP+L  
Sbjct: 17  FTVLGVCEELATAAADLGWKDPSEIQRASIPQALQGKDVIGLAQTGSGKTGAFALPILQE 76

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+K +A       L+L PTRELA Q+++ FE  G    +  A+L+GG+   AQ+ +L +
Sbjct: 77  LLDKPQAFF----ALVLSPTRELAIQISEQFEALGAGIGVKCAVLVGGVDMMAQSIQLGK 132

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR++DH    K   +  +++L +DEADR+L++ F   I  I  ++P  R+T
Sbjct: 133 RPHVVVGTPGRVVDHLTNTKGFGLKQLQVLCLDEADRLLNLDFEQEIDQILKVIPRDRRT 192

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQL 238
            LFSATMT ++ K+    L+NP ++EV+   ST  ++  ++ FV    +    C L  +L
Sbjct: 193 QLFSATMTSKVAKLQRACLRNPVKVEVSAKYSTVASLKQQYLFVPAKHKDCYACYLFNEL 252

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S  TM      C+Q + +  +  +L   GF    IHG + Q  R+  L+ FK G   +
Sbjct: 253 --SASTMMVFTRTCDQTRKLALVARNL---GFGAIPIHGQMSQPKRLGALNKFKAGERNV 307

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RGLDIP V  V NFDVP  +++Y+HR+GRT RAGR G A TLV + D++   
Sbjct: 308 LVATDVASRGLDIPAVDVVINFDVPQNSKDYVHRVGRTARAGRSGLAITLVTQYDVELYQ 367

Query: 359 AIEKLIEKKVD 369
            IE+LI KK+D
Sbjct: 368 KIERLINKKLD 378


>gi|302536730|ref|ZP_07289072.1| ATP-dependent RNA helicase [Streptomyces sp. C]
 gi|302445625|gb|EFL17441.1| ATP-dependent RNA helicase [Streptomyces sp. C]
          Length = 596

 Score =  266 bits (679), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 144/377 (38%), Positives = 220/377 (58%), Gaps = 18/377 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F +LG+ P+   A+   G V P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L  
Sbjct: 63  FRELGIFPETAEALEAVGIVSPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLER 122

Query: 61  ----TILEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                 +E GRAR       P+ L++ PTREL  QV ++    GK  N+ V  + GG  +
Sbjct: 123 VVVPADVEAGRARPDQLTDSPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAY 182

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E Q + L++G DV++ TPGR+LD   + KL ++ ++ LV+DEAD MLD+GF+P ++ I +
Sbjct: 183 EPQVEALKKGVDVIVGTPGRLLDLAGQKKLDLSRVKALVLDEADEMLDLGFLPDVEKIMN 242

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRI----EVNTPSSTAETIEHCFVATYAQY 228
           L+P  RQT+LFSATM   +  ++  ++  P  I    E    ++ A   +H F    A  
Sbjct: 243 LLPAKRQTMLFSATMPGAVIGLARRYMSQPTHIRAVSEDGEGATVANITQHVF---RAHN 299

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
             K  L+ ++LQ++      +IFC  K+   ++   LE++GF+  A+HG++ Q +R + L
Sbjct: 300 MDKPELVSRILQAEG-RGLAMIFCRTKRTAADIAEQLERRGFASGAVHGDLGQGAREQAL 358

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             F+ G + ++V +D+AARG+D+  V HV N+  P   + ++HR+GRTGRAG  G A TL
Sbjct: 359 RAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQTPEDEKTFLHRVGRTGRAGNKGTAVTL 418

Query: 349 VAKEDIKHIDAIEKLIE 365
           V  +DI     I K +E
Sbjct: 419 VDWDDIPRWQLINKALE 435


>gi|296502998|ref|YP_003664698.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|296324050|gb|ADH06978.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
          Length = 455

 Score =  266 bits (679), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 143/364 (39%), Positives = 222/364 (60%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP   
Sbjct: 3   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLP--- 59

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
           ILEK        + LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 60  ILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356

Query: 361 EKLI 364
           EK +
Sbjct: 357 EKTL 360


>gi|30020539|ref|NP_832170.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|229127843|ref|ZP_04256829.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-Cer4]
 gi|29896090|gb|AAP09371.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|228655608|gb|EEL11460.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-Cer4]
          Length = 458

 Score =  266 bits (679), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 143/364 (39%), Positives = 222/364 (60%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP   
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLP--- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
           ILEK        + LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 63  ILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|146293591|ref|YP_001184015.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145565281|gb|ABP76216.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 427

 Score =  266 bits (679), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 145/365 (39%), Positives = 210/365 (57%), Gaps = 10/365 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+   ++  + +  YV PTP+Q  TIP VL   DV   A TG+GKTA+F +P+L  
Sbjct: 11  FAQLGIIAPLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQ 70

Query: 63  LEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNK 117
           L   +   +     R L+L PTRELA QVAD+F  Y  + N  L +    GG+   AQ +
Sbjct: 71  LVDAKTEDKTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQ 130

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADVL+ TPGR+LD  +   + +N +  LV+DEADRML +GF   +  +   +P  
Sbjct: 131 SLRSGADVLVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPVK 190

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTLLFSAT  +E+++++   L NP   ++    S  E+  H  V T  +   K ALL  
Sbjct: 191 KQTLLFSATFPEEVRELTAKLLNNPLEYQLQ---SEQESTIHQRVITVNR-PMKTALLAH 246

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++ +      +IF + K    +L   L K+G +    HG+  Q +R ++L  FK G I 
Sbjct: 247 LIK-EHQWSQALIFVSAKNTCNHLAQKLSKRGITAEVFHGDKAQGARTRVLDGFKNGEIS 305

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARG+DI  +  V NFD+P    +Y+HRIGR+GRAG  G A TL++ ED  H 
Sbjct: 306 VLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHF 365

Query: 358 DAIEK 362
             IEK
Sbjct: 366 GVIEK 370


>gi|218903612|ref|YP_002451446.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|218537452|gb|ACK89850.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
          Length = 450

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 223/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 66  KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T  TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|269797693|ref|YP_003311593.1| DEAD/DEAH box helicase [Veillonella parvula DSM 2008]
 gi|269094322|gb|ACZ24313.1| DEAD/DEAH box helicase domain protein [Veillonella parvula DSM
           2008]
          Length = 432

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 140/363 (38%), Positives = 221/363 (60%), Gaps = 6/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+  +++ A+   G  +PTPIQ ++IP+V + +DV   AQTGTGKT +F+LP   I
Sbjct: 4   FKSLGVCDELIIALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLP---I 60

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++    V   + LI+ PTREL  Q++D  ++ G   N+ +  LIGG   EAQ ++L R 
Sbjct: 61  LQRVHTDVHQEQVLIIAPTRELIKQISDEAKELGSILNVDILPLIGGKTIEAQLQQLGRR 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+LDH  RG L ++ I  +V+DEAD+ML MGF+P I+N+ S     RQ LL
Sbjct: 121 PQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLISQTDANRQLLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ D+++ +++ ++  P  +       T E+I+        +  +K   L ++++  
Sbjct: 181 FSATIPDKIRNLAKAYMSKPISVTAEGKHITLESIDQRVYMMNPE--EKTQRLIKMIED- 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D     I+FCN+++  + L + L   G ++  +HG++ Q  R +IL +F +   Q++VA+
Sbjct: 238 DNPFLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HV+N+DVP   + YIHRIGRTGRAG  G A T    +D   +  IE+
Sbjct: 298 DIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGIAVTFATPQDEAWLRRIER 357

Query: 363 LIE 365
            I+
Sbjct: 358 AIQ 360


>gi|153006338|ref|YP_001380663.1| DEAD/DEAH box helicase domain-containing protein [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029911|gb|ABS27679.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp.
           Fw109-5]
          Length = 455

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 140/335 (41%), Positives = 204/335 (60%), Gaps = 10/335 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L LSP+ + A+  AG+  PTPIQ + IP  L   DV G A TGTGKTA+F+LP++  
Sbjct: 6   FAELHLSPEALAALRRAGFEHPTPIQAQAIPPALAGKDVIGTAATGTGKTAAFLLPLIDR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G+   R    L+L PTRELA Q+ +  E++G    +  A++IGG+    Q + L + 
Sbjct: 66  L-AGKPGTR---ALVLAPTRELALQIGEELERFGHARRVRGAVIIGGVGMAQQAEALRQK 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +++I TPGR++DH  +G   ++ IE LV+DEADRMLDMGF P +  I   +P  RQTLL
Sbjct: 122 REIVIATPGRLVDHLEQGNARLDGIEALVLDEADRMLDMGFKPQLDRILRRLPKQRQTLL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALLQQLLQS 241
           FSATM  E+   +   L++P R+EV    +TA   E   F+A   Q+ K   LL  L + 
Sbjct: 182 FSATMAGEVADFARAHLRDPVRVEVARSGTTAARAEQQVFLAD--QHEKLPLLLTLLERD 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D+    +IF   K+    +   + + G  V  IH +  Q  R   L  FK+GT +++VA
Sbjct: 240 GDST---LIFTRTKRRADKIWKHIGRAGHKVARIHADRSQAQRRMALDGFKDGTYRVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           +D+AARG+D+ ++GHV NFD+P+  E+Y+HR+GRT
Sbjct: 297 TDIAARGIDVAEIGHVVNFDLPHVPEDYVHRVGRT 331


>gi|66472376|ref|NP_001018522.1| probable ATP-dependent RNA helicase DDX47 [Danio rerio]
 gi|63102032|gb|AAH95776.1| Zgc:112350 [Danio rerio]
          Length = 512

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 159/462 (34%), Positives = 253/462 (54%), Gaps = 34/462 (7%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG++ +V+C   D  G+ KPT IQI+ IP+ LQ  DV G+A+TG+GKT +F +P+L 
Sbjct: 81  FKELGVT-EVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAVPVLQ 139

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     R+    TL+L PTRELA Q+A+ F+  G +  +  A+++GGI   +Q   L +
Sbjct: 140 SLLACAQRLH---TLVLTPTRELAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAK 196

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V+I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 197 KPHVVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVIPRDRRT 256

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    LQ+P +  V++  +T + ++  ++   ++Y K C L+  L  
Sbjct: 257 FLFSATMTKKVQKLQRAALQDPVKCSVSSKYATVDKLQQFYIFIPSKY-KDCYLVSIL-- 313

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + ++FC    N   +   L   G +   +HG + Q  R+  L+ FK  +  +++
Sbjct: 314 NELAGNSFMVFCGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLL 373

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GK+ T V + D++    I
Sbjct: 374 ATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 433

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI KK+         +   +E++  AQ                F R +   SS+K   
Sbjct: 434 EALIGKKLPAFPTQEEEVMMLVERVSEAQR---------------FARIEMKESSEKRKR 478

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMP--AFMLPKNRGK 460
           P           Q++ E+   S G R  +    F  P  RG+
Sbjct: 479 P--------SAAQEVDEDGEQSSGVRKKVKGGGFRRPSRRGR 512


>gi|217962948|ref|YP_002341526.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|229142204|ref|ZP_04270728.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST26]
 gi|217066069|gb|ACJ80319.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|228641222|gb|EEK97529.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST26]
          Length = 481

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 133/362 (36%), Positives = 221/362 (61%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FFEYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  ++  P  IE+     T + IEH      A   +K +LL+ +   +
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFE--AIEDEKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|319900501|ref|YP_004160229.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
 gi|319415532|gb|ADV42643.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
          Length = 655

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 142/384 (36%), Positives = 234/384 (60%), Gaps = 10/384 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+S ++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++ 
Sbjct: 4   FEELGVSAEIRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLIQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            +   +   R+P++LIL PTREL  Q+A +   Y K  N L V  + GG   E+Q + L+
Sbjct: 64  QINVSK---RIPQSLILCPTRELCLQIAGDLNDYSKYINGLRVLPVYGGSSIESQIRALK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LD   R  + ++ I+ +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 QGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILADVPQERNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+ ++S+N+L + K I +   + +   ++H     +A+   K A L++++ 
Sbjct: 181 LLFSATMSPEIARISKNYLHDAKEITIGRKNESTNNVKHVVFCVHAK--DKYAALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+V
Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRDI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E++I KK +   G++ + N   EK
Sbjct: 358 ERIIGKKFE--QGEMPTANQICEK 379


>gi|32565321|ref|NP_498260.2| DEAD boX helicase homolog family member (ddx-23) [Caenorhabditis
           elegans]
 gi|14550364|gb|AAK67224.1|U13070_15 Hypothetical protein F01F1.7 [Caenorhabditis elegans]
          Length = 730

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 149/399 (37%), Positives = 218/399 (54%), Gaps = 35/399 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + G   +V  AV + GY++PTPIQ + IP+ LQ  DV G+A+TG+GKTA+F+LP+L 
Sbjct: 302 NWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLV 361

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +E+   R   P  +I+ PTRELA Q+ +   K+GK   +    +IGG   E Q
Sbjct: 362 WITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQ 421

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL  G +V+I TPGR+LD      LL+N    +++DEADRMLDMGF P +Q +   +P
Sbjct: 422 GMKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMP 481

Query: 176 FT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
            T                         RQT++F+ATM+  +++++  +L+ P  + + + 
Sbjct: 482 DTNMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSA 541

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               E +E   V       +K   L ++L+SQ      IIF NQKK    L   L K GF
Sbjct: 542 GKPTERVEQ--VVYMVPEDRKRKKLVEVLESQ-FQPPIIIFVNQKKGADMLSKGLTKLGF 598

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
               +HG   Q  R   L   KEGT  ++VA+D+A RG+D+ DV  V N+D+    E+Y 
Sbjct: 599 KPTVLHGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYT 658

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIK-HIDAIEKLIEKKV 368
           HRIGRTGRAG+HGKA T +  +D   + D  + L+E  V
Sbjct: 659 HRIGRTGRAGKHGKAITFLTPDDTAVYFDLKQVLVESPV 697


>gi|254388923|ref|ZP_05004154.1| hypothetical protein SSCG_01341 [Streptomyces clavuligerus ATCC
           27064]
 gi|197702641|gb|EDY48453.1| hypothetical protein SSCG_01341 [Streptomyces clavuligerus ATCC
           27064]
          Length = 891

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 142/376 (37%), Positives = 217/376 (57%), Gaps = 12/376 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F DLG+  +   A+   G + P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L  
Sbjct: 46  FRDLGILAETAEALEAVGILNPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLER 105

Query: 61  -TI---LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            T+   +E GRAR       P+ L++ PTREL  QV ++    GK  N+ V  + GG  +
Sbjct: 106 VTVPADVEAGRARPDQLSEAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAY 165

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E Q + L +G DV++ TPGR+LD   + KL ++ +  LV+DEAD MLD+GF+P ++ I  
Sbjct: 166 EPQVEALRKGVDVIVGTPGRLLDLAGQKKLDLSQVRALVLDEADEMLDLGFLPDVEKIIQ 225

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KK 231
           L+P  RQT+LFSATM   +  ++  ++  P  I    P     T+ +     Y  +S  K
Sbjct: 226 LLPAKRQTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANITQRVYRAHSMDK 285

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             ++ ++LQ++      +IFC  K+   ++   L ++GF+  A+HG++ Q +R + L  F
Sbjct: 286 PEMVSRILQAEG-RGLAMIFCRTKRTAADIADQLARRGFASGAVHGDLGQGAREQALRAF 344

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + Y+HR+GRTGRAG  G A TLV  
Sbjct: 345 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRVGRTGRAGASGTAVTLVDW 404

Query: 352 EDIKHIDAIEKLIEKK 367
           +DI     I K ++ K
Sbjct: 405 DDIPRWQLINKALDLK 420


>gi|307728119|ref|YP_003905343.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307582654|gb|ADN56052.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
          Length = 467

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 149/392 (38%), Positives = 221/392 (56%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P  +  +   GYV+ TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 11  FSQLPLPPAALANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+   AR    + ++L PTRELA QV     +  +   N+ V  L GG P   Q   LE 
Sbjct: 71  LD---ARNFAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  RG L + ++  LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 128 GAHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVKQCPKERQTL 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K+S+ FL+NPK +++       +  +  +  T  +      LL    + 
Sbjct: 188 LFSATYPEGIVKLSQQFLRNPKEVKLAERHDNTKIRQRFYEVTEDERLHAVGLLLNHYRP 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 248 VST----IAFCNTKQQCRDLLEVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  +  IE
Sbjct: 304 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGGIE 363

Query: 362 KLIEKKVDWLN-GDLSS-----LNPPLEKIDI 387
           +  +++V+W    +L++     L PP+E + I
Sbjct: 364 QAQKREVEWHKLSELTATSNEPLLPPMETLQI 395


>gi|301053986|ref|YP_003792197.1| ATP-dependent RNA helicase [Bacillus anthracis CI]
 gi|300376155|gb|ADK05059.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 454

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 223/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 66  KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T  TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|168703446|ref|ZP_02735723.1| probable ATP-dependent RNA helicase [Gemmata obscuriglobus UQM
           2246]
          Length = 437

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 141/373 (37%), Positives = 212/373 (56%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL P +V A  D GY +PTP+Q   IP  L+  DV   AQTGTGKTA F+LP+L
Sbjct: 1   MPFKALGLHPLIVRATQDLGYQEPTPVQAGAIPAALEGRDVLATAQTGTGKTAGFLLPIL 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L + R   R    L+L PTRELA Q+ D      K+  +  AL++GG P   Q +  
Sbjct: 61  HRLLAQPRGGTR---ALVLSPTRELAEQIQDVCTGLAKHTPIQSALVVGGRPEGPQERAF 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR+LD   R    ++    LV+DEAD + DMGF+P ++ I + +P  + 
Sbjct: 118 RAGVDIIVATPGRLLDMLQRNVAKLDRATTLVLDEADSLFDMGFLPDVKRIMARMPARKH 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + +++   L+NP  +++   SSTA  I             K ALL+ LL
Sbjct: 178 TLLFSATMPPVIGQLANEVLRNPAVVQIGRRSSTAVGITQAAYPVPTHL--KTALLRHLL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + M + ++F   K     +   +   GF+V  +H N     R   +  F++G  Q+M
Sbjct: 236 RETE-MPSVLVFTRTKFGAKKIARQVAADGFTVAELHSNRTPSQRTAAMEGFRQGKFQVM 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+++AARGLD+  + HV + DVP+  E+Y+HRIGRTGRAG  G AF L ++++   +  
Sbjct: 295 VATNIAARGLDVNHITHVISTDVPDVPEDYVHRIGRTGRAGATGDAFILFSRDEEDSLAR 354

Query: 360 IEKLIEKKVDWLN 372
           IE+ + +++  + 
Sbjct: 355 IERQVGQRLPRVT 367


>gi|154688021|ref|YP_001423182.1| DbpA [Bacillus amyloliquefaciens FZB42]
 gi|154353872|gb|ABS75951.1| DbpA [Bacillus amyloliquefaciens FZB42]
          Length = 479

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 136/363 (37%), Positives = 222/363 (61%), Gaps = 6/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  +SP++  A+    Y +PT +Q + IP  LQ+ D+   +QTG+GKTA+F +P+  
Sbjct: 3   EFNEYAISPEIRRALNGLQYTEPTEVQRRVIPAALQKKDLVVKSQTGSGKTAAFGIPICE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           + E    +   P+ LIL PTRELAAQ+ ++    G+   +    + G   F+ Q  +L++
Sbjct: 63  LAEWEENK---PQALILTPTRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQKTELKQ 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + V+  TPGR+LDH  +G L +  +  +VIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 120 KSHVVAGTPGRVLDHIEKGTLPLERLAYVVIDEADEMLNMGFIEQVEAIIQHLPKNRVTM 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ D+++K+S  ++++P+ IEV     T + IEH FV T  +   K +LL+ +L +
Sbjct: 180 LFSATLPDDVEKLSRTYMKDPELIEVKAEGLTTKDIEH-FV-TRTEEEDKTSLLRDVLIT 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++   + IIFC  K+ V+ L   L++ G+    IHG + Q  R  +++ FK G  + ++A
Sbjct: 238 ENP-DSCIIFCRTKERVIQLTDELDRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLIA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++  V N+D+P   E+Y+HR GRTGRAG  G+A T V   + + ++ IE
Sbjct: 297 TDVAARGIDIENISLVINYDIPLEKESYVHRTGRTGRAGHRGRAITFVTPFEARFLNDIE 356

Query: 362 KLI 364
             I
Sbjct: 357 TYI 359


>gi|294497529|ref|YP_003561229.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
 gi|294347466|gb|ADE67795.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
          Length = 481

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 135/362 (37%), Positives = 218/362 (60%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+  GLS KV  A+    Y  PT +Q K +P+ L+  DV   +QTG+GKTASF +P+  +
Sbjct: 6   FSQYGLSDKVAKALSSLQYNHPTEVQSKVLPIALEERDVVVKSQTGSGKTASFGIPLCEL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +     +   P+ L+L PTRELAAQV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VNWEENK---PQALVLTPTRELAAQVKEDITNIGRFKRIKAAAVYGKSPFAKQKVELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +  L +  I  LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKETLALEKIRYLVIDEADEMLNMGFIDQVEAIIQHLPSERVTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  +++ P  +E+     T  TI+H  ++   +  +K  LL+ +   +
Sbjct: 183 FSATLPEDIEELSRKYMKKPVDVEIKANGLTTSTIDHSVIS--VENERKFELLKDVTTVE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++ V  L   L+  G+    IHG + Q  R +++++FK+G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQEQVNTLLDDLDDFGYPCDKIHGAMVQEDRFEVMNDFKKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG+ GKA T V   + + +  IE+
Sbjct: 300 DVAARGIDIDNITHVINYDLPLEKESYVHRTGRTGRAGKKGKAITFVTPYEKRMLSEIEE 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|328555607|gb|AEB26099.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens
           TA208]
 gi|328913984|gb|AEB65580.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens
           LL3]
          Length = 479

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 138/363 (38%), Positives = 219/363 (60%), Gaps = 6/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  +S  +  A+    Y +PT +Q + IP  LQ+ D+   +QTG+GKTA+F +P   
Sbjct: 3   EFKDFSISLDIARALEGLQYTEPTEVQRRVIPAALQKKDLVVKSQTGSGKTAAFGIP--- 59

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I E        P+ LIL PTRELAAQ+ ++    G+   +    + G   F+ Q  +L++
Sbjct: 60  ICELADWEENKPQALILTPTRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQKTELKQ 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + V+  TPGR+LDH  +G L ++ +  +VIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 120 KSHVVCGTPGRVLDHIEKGTLPLDRLAYVVIDEADEMLNMGFIEQVEAIIQHLPKNRVTM 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ D+++K+S  ++++P+ IEV     T + IEH FV T A    K +LL+ +L +
Sbjct: 180 LFSATLPDDVEKLSRTYMKDPELIEVKAEGLTTKDIEH-FV-TRAAEEDKSSLLRDVLIT 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++   + IIFC  K+ V+ L   L++ G+    IHG + Q  R  +++ FK G  + ++A
Sbjct: 238 ENP-DSCIIFCRTKERVIQLTDELDRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLIA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++  V N+D+P   E+Y+HR GRTGRAG  G+A T V   + + ++ IE
Sbjct: 297 TDVAARGIDIENISLVINYDIPLEKESYVHRTGRTGRAGHRGRAITFVTPSESRFLNDIE 356

Query: 362 KLI 364
             I
Sbjct: 357 TYI 359


>gi|206975837|ref|ZP_03236748.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|206745931|gb|EDZ57327.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
          Length = 481

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 133/362 (36%), Positives = 221/362 (61%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FFEYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  ++  P  IE+     T + IEH      A   +K +LL+ +   +
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKVAGITTDKIEHTLFE--AIEDEKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|149181312|ref|ZP_01859810.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. SG-1]
 gi|148851037|gb|EDL65189.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. SG-1]
          Length = 481

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 140/362 (38%), Positives = 216/362 (59%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  +S ++  A+    Y  PT +Q K IP  L+  D+   AQTG+GKTA+F +P+  +
Sbjct: 6   FADYHVSEEIQRALAVLKYETPTEVQNKVIPSALENQDLVVKAQTGSGKTAAFGIPVSDM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ LIL PTRELA QV ++    G+   +    + G  PF  Q  +L++ 
Sbjct: 66  IEWEEKK---PQALILTPTRELAVQVREDITNIGRFKRIKAVAVYGKEPFSKQKDELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR++DH  R  L +N I+ L+IDEAD ML+ GFI  ++ I   +P  R T++
Sbjct: 123 THVVVGTPGRVMDHIERETLDLNQIKYLIIDEADEMLNRGFIDEVEAIIKELPSNRVTMV 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +++ +   ++ NP +IE+ +   TA+TIEH  +    +  +K +LL+ +   +
Sbjct: 183 FSATLPKDVENLCHKYMNNPLQIEIESTGVTADTIEHSLIEVREE--EKISLLKDITVVE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + +IFC  K+NV  +   LEK G+    +HG ++Q  R  ++  FK G  + +VA+
Sbjct: 241 NP-DSCLIFCRTKENVDTVYSELEKAGYPCERLHGGLEQEDRFSVMEGFKLGNFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI +V  V N+DVP   E+Y+HR GRTGRAG  GKA TL    + K I AIE+
Sbjct: 300 DVAARGIDIDNVTLVINYDVPMEKESYVHRTGRTGRAGNKGKAITLSTPYEGKFIKAIER 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|294139293|ref|YP_003555271.1| ATP-dependent RNA helicase DbpA [Shewanella violacea DSS12]
 gi|293325762|dbj|BAJ00493.1| ATP-dependent RNA helicase DbpA [Shewanella violacea DSS12]
          Length = 469

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 147/369 (39%), Positives = 221/369 (59%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P+++  +   GY   T IQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 12  MSFSTLTLKPELIENLKTMGYDSMTAIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLL 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             L+  R R++   +L+L PTRELA QVA       +  +N+ V  L GG+P   Q   L
Sbjct: 72  HKLDVKRFRIQ---SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH +R  L + N+  LV+DEADRML+MGF+P +  I + +P  RQ
Sbjct: 129 EHGAHIIVGTPGRIIDHLSRDLLNLENVNTLVLDEADRMLEMGFLPDLDYIMAEMPRERQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   ++QKV+E  +  P  ++V + +  + TI+  F    +   ++ AL   LL
Sbjct: 189 TLLFSATFPKQIQKVAEQIMFKPVMVKVAS-THDSNTIDQHFYQIDSNKDRQKALRLLLL 247

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q +    + ++FCN K+   ++  +L   GFSV A+HG+++QR R   L  F   +  +M
Sbjct: 248 QHRP--DSAVVFCNTKRETKDVAATLANDGFSVVALHGDLEQRDRDITLMQFANKSASIM 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N++     E +IHRIGRTGRAG  G AFT    +D   I  
Sbjct: 306 VATDVAARGLDIEALDMVINYEFAFDTEVHIHRIGRTGRAGSKGTAFTFYTLDDDYKIKL 365

Query: 360 IEKLIEKKV 368
           +E+ +E+ +
Sbjct: 366 LEEYLERDI 374


>gi|304411084|ref|ZP_07392700.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307301793|ref|ZP_07581551.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304350619|gb|EFM15021.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306913831|gb|EFN44252.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 469

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 143/369 (38%), Positives = 221/369 (59%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P+++  +   GY + TPIQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 12  MAFSTLKLKPELLENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLL 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             L+  R R++   TL+L PTRELA QVA       +  +N+ V  L GG+P   Q   L
Sbjct: 72  NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH +R +L ++N+ +LV+DEADRML+MGF P +  I    P  RQ
Sbjct: 129 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +++Q +++  + +P  ++V     +    +H +   +    K      QLL
Sbjct: 189 TLLFSATFPEQIQSIAKQIMYDPSMVKVEGNHDSLSIAQHFY---HLDDDKARMQALQLL 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ ++FCN K+    +   L+  GFSV A+HG+++QR R + L  F   +  ++
Sbjct: 246 LLEHKPESAVVFCNTKRETQKVADELDGLGFSVLALHGDLEQRDRDETLLQFANKSACVL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  VFN+ V    E +IHRIGRTGRAG  G A+T    +D   I  
Sbjct: 306 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIAL 365

Query: 360 IEKLIEKKV 368
           +E+ +E+++
Sbjct: 366 LEEYLEREI 374


>gi|32490970|ref|NP_871224.1| hypothetical protein WGLp221 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166176|dbj|BAC24367.1| deaD [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 583

 Score =  266 bits (679), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 149/374 (39%), Positives = 226/374 (60%), Gaps = 11/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++LGL   ++ A+ D GY KP+PIQ K IP +L+ +DV GIAQTG+GKTA+F LP+L
Sbjct: 6   LSFSELGLKDFILLALNDLGYKKPSPIQEKCIPFLLKGYDVLGIAQTGSGKTAAFFLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             ++    ++++P+ +IL PTRELA Q+     +  KY K  N+    L GG  +  Q K
Sbjct: 66  NNID---LKLKLPQIIILTPTRELALQIKFACCSLSKYIKEINIIA--LYGGQNYSIQIK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+R   +++ TPGRILD  N+  L ++ I   V+DEAD ML MGFI  ++NI       
Sbjct: 121 SLKRNPQIVVGTPGRILDLLNKKYLNLSEITSFVLDEADEMLRMGFIEDVENIFLKSSKQ 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            QT+LFSATM   + ++++ F++ PK I +    +T   I+  +   Y    K  ALL+ 
Sbjct: 181 HQTILFSATMPAAIHRITKRFMKKPKEIRIKASENTRPNIKQNYWIVYG-LCKIEALLRF 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L    +     IIF   K   + +   LEK G++  +++G+++Q  R K L+ FK G + 
Sbjct: 240 L--EVEIFDAVIIFVRTKNATLEVSDVLEKNGYNSSSLNGDMNQILREKTLNRFKTGLLD 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  +  V N+D+P   E+YIHRIGRTGRAGR GKA   V   + K +
Sbjct: 298 ILVATDVAARGLDVDRISLVINYDIPLDVESYIHRIGRTGRAGRTGKALMFVENRERKIL 357

Query: 358 DAIEKLIEKKVDWL 371
             IE+ I++K+  +
Sbjct: 358 YNIERNIKEKLSQI 371


>gi|172058935|ref|YP_001815395.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171991456|gb|ACB62378.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 410

 Score =  266 bits (679), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 155/420 (36%), Positives = 243/420 (57%), Gaps = 18/420 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L +  + V  +   G  +PTPIQ + IP +L   D+ G AQTGTGKT +F+LP   I
Sbjct: 4   FEALHIQEQWVKKLQKQGIKQPTPIQEQAIPHLLAGRDLIGKAQTGTGKTLAFLLP---I 60

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLER 121
           LE+     +  + LI+ PTRELA Q+AD   K  +N     AL + GG     Q ++L R
Sbjct: 61  LEQIDLESKTVQALIVAPTRELARQIADETHKLIRNMEDIRALAVYGGQDVFKQIQRLGR 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILDH  RG L ++ ++ LV+DEAD+ML +GF+P I++I +  P  RQ +
Sbjct: 121 MPQIIIGTPGRILDHVGRGTLDLSELKTLVLDEADQMLQIGFLPEIEDIIAAAPVDRQFV 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SATM ++++++++ +L++P  ++V     T + IE   V T  +  +K A L+ +L  
Sbjct: 181 MLSATMPEKVEQLAKTYLRDPIEVQVEAEKVTVDAIEQFVVETTDR--RKQATLRTML-- 236

Query: 242 QDTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            D M+    IIFC  ++ V  L   L+ QG+    +HG + Q  R K ++ F +G    +
Sbjct: 237 -DEMRPYAAIIFCRTQRRVSKLNEELQMQGYPTDELHGGLTQGKREKAMAKFYQGKTPFL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+  V HVFN+D+P+ AE+Y+HRIGRTGRAG  G A ++V   D +    
Sbjct: 296 IATDVASRGLDVTGVTHVFNYDLPDDAESYVHRIGRTGRAGNDGVAISIVTPRDGRSFRD 355

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E+ +  +V  +  +LS      +++  AQH+ + K    P +  G  RR  N    + H
Sbjct: 356 MERELGVEVTPIVVELS------DEMIRAQHDQS-KGTKKPAEGRGNTRRSSNRRPGRDH 408


>gi|42781571|ref|NP_978818.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987]
 gi|42737494|gb|AAS41426.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           ATCC 10987]
          Length = 447

 Score =  266 bits (679), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 222/364 (60%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP   
Sbjct: 3   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLP--- 59

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
           ILEK        + LI+ PTRELA Q+ +  +K   +  ++ V  + GG     Q +KL+
Sbjct: 60  ILEKIDPECSDVQALIVAPTRELALQITNEIKKMLVQRDDINVLAIYGGQDVAQQLRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I++ +   T  TIE   + T    +K  AL  + + 
Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQIQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L   L+ +G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDDLKGRGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356

Query: 361 EKLI 364
           EK +
Sbjct: 357 EKTL 360


>gi|261880679|ref|ZP_06007106.1| ATP-dependent RNA helicase DeaD [Prevotella bergensis DSM 17361]
 gi|270332631|gb|EFA43417.1| ATP-dependent RNA helicase DeaD [Prevotella bergensis DSM 17361]
          Length = 560

 Score =  266 bits (679), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 140/375 (37%), Positives = 230/375 (61%), Gaps = 12/375 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ A+ D  +   TP+Q K IP +L+  D+ G+AQTGTGKTA+++LP+L
Sbjct: 1   MKFEELNLSNDILDALYDMNFEDCTPVQEKCIPEILKGRDLMGVAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL----TVALLIG--GIPFEA 114
           +++++G         +I+ PTRELA Q+    + +   Y+L    +VA+  G  G  ++ 
Sbjct: 61  SMIDEGNYPKNSVNCVIMSPTRELAQQIDQAMQGFA--YHLDTVSSVAVYGGNDGNRYDQ 118

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           + K +  GADV+I TPGR++ H   G + +  +   V+DEADRMLDMGF   I  I S +
Sbjct: 119 EMKSMRLGADVIIATPGRLISHITMGNIDLGKVNFFVLDEADRMLDMGFSDDIMKIASYL 178

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P   QT++FSATM ++++K+++N L+NP  +++   S  AE I+      Y   ++K  +
Sbjct: 179 PKNCQTIMFSATMPNDIEKMAQNLLKNPAEVKLAV-SKPAEKIKQSAYVCYT--TQKIEI 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           ++ + ++ D +K  IIF   K+ V  +  +L +   +   +H ++DQ  R  I+  FK G
Sbjct: 236 IKHIFKAGD-LKRVIIFSGSKQKVKQINQALAQLKINSGEMHSDLDQSQRDDIMYKFKSG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I ++VA+D+ ARG+DI D+  V N+DVP  +E+Y+HRIGRT RA R G A TLV ++D+
Sbjct: 295 QIDVLVATDIVARGIDIDDIAMVINYDVPRDSEDYVHRIGRTARADRDGVAITLVNEDDM 354

Query: 355 KHIDAIEKLIEKKVD 369
                IE+ ++K+++
Sbjct: 355 FAFHKIEQFLDKEIE 369


>gi|77166069|ref|YP_344594.1| DEAD/DEAH box helicase-like [Nitrosococcus oceani ATCC 19707]
 gi|76884383|gb|ABA59064.1| ATP-dependent RNA helicase CsdA [Nitrosococcus oceani ATCC 19707]
          Length = 500

 Score =  266 bits (679), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 142/363 (39%), Positives = 214/363 (58%), Gaps = 7/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F    +S  V+ A+   GY  PT IQ + IP +L  HD+ G AQTGTGKTA+F +P L
Sbjct: 8   LSFDSFAISAPVLQAIKQVGYETPTLIQARAIPHLLAGHDLVGQAQTGTGKTAAFAIPTL 67

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             LE  +   + P+ L+L PTRELA QVA+ F+ Y +   +  V  + GG     Q ++L
Sbjct: 68  ERLELSQ---KEPQVLVLVPTRELAIQVAEAFQSYARYLEDFHVLPIYGGQSMGNQLRQL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA V++ TPGRI+DH  R  L++  +  +++DEAD ML MGFI  ++ I   VP  RQ
Sbjct: 125 KRGAHVIVGTPGRIMDHLRRKSLILTKLTTVILDEADEMLKMGFIEDVEWILKQVPTKRQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   ++ ++   LQ P+ I++   +++   I   +      +  K   L ++L
Sbjct: 185 VALFSATMPTSVRNIASRHLQAPQDIKIKGETASLPAINQRYWLVSGLH--KLDALTRML 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++     IIF   K     L   L  +G++  A++G+I Q SR K++   K+ TI ++
Sbjct: 243 EAEE-YDATIIFVRTKIATEELAKKLMARGYAAAALNGDIPQSSREKVVDQLKKNTIDII 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +GHV N+D+P     YIHRIGRTGRAGR G A   VA  + + + A
Sbjct: 302 VATDVAARGLDVKRIGHVVNYDIPYDTGTYIHRIGRTGRAGRTGTATLFVAPRERRMLSA 361

Query: 360 IEK 362
           I++
Sbjct: 362 IKR 364


>gi|228933771|ref|ZP_04096617.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228825843|gb|EEM71630.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 451

 Score =  266 bits (679), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 223/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 3   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 63  KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T  TIE   + T    +K  AL  + + 
Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356

Query: 361 EKLI 364
           EK +
Sbjct: 357 EKTL 360


>gi|118469425|ref|YP_886296.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155]
 gi|118170712|gb|ABK71608.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155]
          Length = 502

 Score =  266 bits (679), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 142/370 (38%), Positives = 215/370 (58%), Gaps = 9/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+  ++V A+ + G   P  IQ  T+PL L   D+ G A+TG GKT +F +P+L  
Sbjct: 8   FAELGVRDEIVRALAENGIEHPFAIQELTLPLALAGDDLIGQARTGMGKTYAFGVPLLHR 67

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY------NLTVALLIGGIPFEA 114
           +  ++ R     PR L++ PTREL  QV ++     K+         TV  + GG P+E 
Sbjct: 68  VSSDENRPLTGAPRALVVVPTRELCLQVYNDLAGAAKHLPTNDGRKFTVTSIYGGRPYEP 127

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L +G DV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+ I  L 
Sbjct: 128 QIEALRKGVDVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILQLT 187

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P +RQ +LFSATM D +  ++  F+  P  I    P S A        A  A    K  L
Sbjct: 188 PDSRQAMLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTAQYAYRAHALDKVEL 247

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + ++LQ++      ++F   K+    +   L ++GF V A+HG++ Q +R K L +F+ G
Sbjct: 248 VSRILQARGRGAT-MVFTRTKRTAQKVSDELAERGFKVGAVHGDLGQGAREKALKSFRTG 306

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAG+ G A TLV  +++
Sbjct: 307 EIDVLVATDVAARGIDIDDVTHVINYQCPEDEQAYVHRIGRTGRAGKTGVAITLVDWDEL 366

Query: 355 KHIDAIEKLI 364
              + I+K +
Sbjct: 367 ARWEMIDKAL 376


>gi|301056918|ref|YP_003795129.1| ATP-dependent RNA helicase [Bacillus anthracis CI]
 gi|300379087|gb|ADK07991.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 481

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 132/362 (36%), Positives = 220/362 (60%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  LS +V  A++  GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSNYALSKEVRRALIGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  ++  P  IE+     T + IEH       +  +K +LL+ +   +
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R  ++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE 
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEA 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|293401901|ref|ZP_06646041.1| DEAD/DEAH box family ATP-dependent RNA helicase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304559|gb|EFE45808.1| DEAD/DEAH box family ATP-dependent RNA helicase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 580

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 139/351 (39%), Positives = 213/351 (60%), Gaps = 9/351 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L +S +++ AV + GY   T IQ ++IP +L+  DV G + TGTGKTA+F +P +  
Sbjct: 4   FNELPISSEIMKAVEEMGYENATDIQAQSIPCILEGKDVLGRSNTGTGKTAAFGIPAIEK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           +  G    + P  LI+ PTREL  QVA    K+ K    + +  + GG P + Q + L+R
Sbjct: 64  VIPGN---KFPNALIICPTRELVTQVATELRKFSKYKEGVKIVPIYGGQPIDRQIQLLKR 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TRQ 179
           G  +++ TPGRI+DH NR  L + ++ ++++DEAD ML+MGF   I+ I S++P     Q
Sbjct: 121 GCGIVVGTPGRIMDHLNRRTLKLQDVNMIILDEADEMLNMGFKEDIEEILSMMPADNEHQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT    + K++E F ++P R+E+ +   T +T+E  +    A   KK   L+ LL
Sbjct: 181 TILFSATWPQAILKITEQFQKDPVRVEIKSSQRTIDTVEQIYYE--APRGKKANALRVLL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     +IFCN KK V  LC  L K      ++HG++ Q  R +++  F+ GT  ++
Sbjct: 239 NHYDP-DLCMIFCNTKKMVDELCEELNKHDIKATSLHGDMKQEFRSRVMEQFRNGTSPIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           +A+D+AARG+D+ D+  V NFD+P   E YIHR+GRTGRAG+ G A TL++
Sbjct: 298 IATDVAARGIDVDDIDLVVNFDIPQDMEYYIHRVGRTGRAGKKGLAITLIS 348


>gi|32363291|sp|Q88NB7|RHLB_PSEPK RecName: Full=ATP-dependent RNA helicase rhlB
 gi|24982750|gb|AAN66919.1|AE016320_7 ATP-dependent RNA helicase RhlB [Pseudomonas putida KT2440]
          Length = 398

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 224/373 (60%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS +++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ +++ 
Sbjct: 11  FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQ 70

Query: 63  LEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L++        +  PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K 
Sbjct: 71  LQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKA 130

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 131 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 190

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT TD++  +++ +  NP  +E+   +  +ET+E    A     S K  LL
Sbjct: 191 SERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAG--SDKYKLL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ +Q+  +  ++F N+K  V  +   L + G +   + G++ Q  R++ L +F+EG 
Sbjct: 249 YNLV-TQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGR 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 308 ITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSY 367

Query: 356 HIDAIEKLIEKKV 368
            + AIE L+ +K+
Sbjct: 368 QLPAIEALLGRKI 380


>gi|297736780|emb|CBI25981.3| unnamed protein product [Vitis vinifera]
          Length = 347

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 136/335 (40%), Positives = 204/335 (60%), Gaps = 2/335 (0%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR- 71
           + ++  AG+  PTPIQ +T P+ LQ  D+  IA+TG+GKT  +++P   +L + R  V+ 
Sbjct: 3   IASIYSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRRRRNNVQN 62

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
            P  ++L PTRELA Q+ D   K+G++  ++ A L GG    AQ K+L+RGADV++ TPG
Sbjct: 63  GPTVMVLAPTRELATQIQDETIKFGRSSRVSCACLYGGTSRNAQLKELDRGADVVVATPG 122

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+ D     K+ +  I +LV+DEADRMLDMGF P I+ I + +P  RQTL+++AT   E+
Sbjct: 123 RLNDILESKKIDLGQISLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEV 182

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
           +K++ + L NP ++ + +    A               +K   L+Q+L+SQ+     IIF
Sbjct: 183 RKIAGDLLVNPVQVNIGSVDELAANKAITQYVEVVSPPEKQRRLEQILRSQERGSKVIIF 242

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           C+ KK    L  S+ +  F    IHG+  Q  R  +L+ F+ G   ++VA+D+AARGLDI
Sbjct: 243 CSTKKLCDQLARSIGRN-FGAAVIHGDKSQVERDWVLNQFRSGKSPILVATDVAARGLDI 301

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            D+  V N+D P   E+Y+HRIGRTGRAG  G A+
Sbjct: 302 KDIRVVINYDFPTGIEDYVHRIGRTGRAGATGWAW 336


>gi|114048765|ref|YP_739315.1| ATP-dependent RNA helicase DbpA [Shewanella sp. MR-7]
 gi|113890207|gb|ABI44258.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 479

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 220/369 (59%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P+++  +   GY + TPIQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 22  MAFSTLKLKPELLENLTTMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             L+  R R++   TL+L PTRELA QVA       +  +N+ V  L GG+P   Q   L
Sbjct: 82  NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSL 138

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH  R +L ++N+ +LV+DEADRML+MGF P +  I    P  RQ
Sbjct: 139 EHGAHIIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQ 198

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +++Q +++  + +P  ++V   +    TIE  F       ++  AL  QLL
Sbjct: 199 TLLFSATFPEQIQSIAKQIMYDPVMVKVAV-THEKSTIEQHFYHLDDDKARMQAL--QLL 255

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 ++ ++FCN K+    +   L   GFSV A+HG+++QR R + L  F   +  ++
Sbjct: 256 LLDRKPESAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  VFN+ V    E +IHRIGRTGRAG  G AFT    +D   I  
Sbjct: 316 VATDVAARGLDIDALDAVFNYHVAFDTEVHIHRIGRTGRAGSKGAAFTFFDDQDGYKIAL 375

Query: 360 IEKLIEKKV 368
           +E+ +E+ +
Sbjct: 376 LEEYLERDI 384


>gi|127511532|ref|YP_001092729.1| ATP-dependent RNA helicase DbpA [Shewanella loihica PV-4]
 gi|126636827|gb|ABO22470.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 468

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 155/402 (38%), Positives = 234/402 (58%), Gaps = 10/402 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L+P ++  +   G+ + TPIQ +++P +L   DV G  +TG+GKTA+F L +L  
Sbjct: 13  FDSLPLNPALLDTLKSIGFHQMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGLLNK 72

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L+  R R++   TL+L PTRELA QVA       +  +N+ +  L GG+P   Q   LE 
Sbjct: 73  LDVKRFRIQ---TLVLCPTRELADQVAAELRTLARGIHNIKILTLCGGVPMGPQIGSLEH 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG+L ++N++ LV+DEADRML+MGF   +  I   VP  RQTL
Sbjct: 130 GAHIIVGTPGRIIDHLDRGRLDLDNVDTLVLDEADRMLEMGFQRELDAIMQEVPRERQTL 189

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  +++Q +SE F+ +P  ++V       E+IE  F        +  AL  QLL  
Sbjct: 190 LFSATFPEQIQGLSEQFMIDPLMVKVEVQHG-GESIEQHFYECGNNNDRMKAL--QLLLL 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   ++ ++FCN K+   ++   L   GFSV A+HG+++QR R ++L  F   +  +MVA
Sbjct: 247 KHQPESAVVFCNTKRETKDVAAKLTNAGFSVVALHGDLEQRDRDQMLLKFANKSASVMVA 306

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N+ +    E +IHRIGRTGRAG  G A TL   ED   +  + 
Sbjct: 307 TDVAARGLDIDALDMVVNYHMAYDTEVHIHRIGRTGRAGSKGAAHTLFNHEDGYKLSLLA 366

Query: 362 KLIEKKVDW--LNGD-LSSLNPPLEKIDIAQHNHARKNNPIP 400
             + +++D   L G+ L    PP  ++   Q +  +K    P
Sbjct: 367 DALGREIDGEALPGEALLDTMPPQPRMVTIQIDGGKKQKVRP 408


>gi|291453994|ref|ZP_06593384.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291356943|gb|EFE83845.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
          Length = 469

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 151/431 (35%), Positives = 238/431 (55%), Gaps = 30/431 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F +LG+  +   A+   G   P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L  
Sbjct: 4   FRELGILSETAEALEAVGITNPFPIQELTLPVALSGTDVIGQAKTGTGKTLGFGLPLLER 63

Query: 61  -TI---LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            T+   +E GRA+       P+ L++ PTREL  QV ++    GK  ++ V  + GG  +
Sbjct: 64  VTVAADVEAGRAKPEQLTTAPQALVVVPTRELCQQVTNDLLTAGKVRDVRVLAIYGGRAY 123

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E Q + L +G DV++ TPGR+LD   + KL + +++ LV+DEAD MLD+GF+P ++ I +
Sbjct: 124 EPQVEALNKGVDVIVGTPGRLLDLAGQRKLDLGHVKALVLDEADEMLDLGFLPDVERIVT 183

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI----EHCFVATYAQY 228
           ++P  RQT+LFSATM   +  ++  ++  P  I   +P     T+    +H F    A  
Sbjct: 184 MLPAKRQTMLFSATMPGAVIGLARRYMTQPTHIRATSPDDEGATVANIAQHVF---RAHS 240

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
             K  L+ ++LQ++      +IFC  K+   ++   L+++GF+  A+HG++ Q +R + L
Sbjct: 241 MDKPELVSRILQAEG-RGLAMIFCRTKRTAADIAEQLQRRGFASGAVHGDLGQGAREQAL 299

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             F+ G + ++V +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAGR G A TL
Sbjct: 300 RAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQTPEDEKTYLHRIGRTGRAGRAGIAITL 359

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST--GF 406
           V  +DI     I K +E           + N P+E    + H +     P   K T    
Sbjct: 360 VDWDDIPRWQLINKALEL----------TFNDPVETYSTSPHLYEELRIPEGTKGTLPRA 409

Query: 407 DRRKKNYSSQK 417
           DR +   ++++
Sbjct: 410 DRTRAGLAAEE 420


>gi|319937738|ref|ZP_08012141.1| ATP-dependent RNA helicase dbpA [Coprobacillus sp. 29_1]
 gi|319807173|gb|EFW03787.1| ATP-dependent RNA helicase dbpA [Coprobacillus sp. 29_1]
          Length = 479

 Score =  265 bits (678), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 138/371 (37%), Positives = 221/371 (59%), Gaps = 10/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +  ++  A+   GY + T +Q   IP + Q  DV   A+TG+GKTA+F +P+L
Sbjct: 1   MKFKELNIDGRIQDALEKLGYSEATEVQSAVIPELKQERDVIVKAKTGSGKTAAFAIPLL 60

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
              + E+ +     P+ L+L PTRELA QV ++F+  G    +    + G  P++ Q + 
Sbjct: 61  DSVVWEENK-----PQVLVLTPTRELAIQVKEDFDNIGTYKKIKTLAIFGKQPYKFQTQD 115

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   V++ TPGRILDH  RG    ++++ LV+DEAD ML+MGFI  ++ I   +P  R
Sbjct: 116 LKQKTHVVVATPGRILDHLQRGTFDASHLKYLVLDEADEMLNMGFIETVEKIIEKLPVKR 175

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            T LFSAT+ +E++K++  F++NP ++ +       + IE  +      Y K   LL+ +
Sbjct: 176 TTCLFSATLPEEIKKLAAKFMKNPVQVNIKQSQVINQKIE-TYAYEVMSYEKAGFLLKLI 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  + +  + IIFC  ++ V  +   L K G SV  IHG + Q  R++ +++F+ G +Q 
Sbjct: 235 VHEKPS--SAIIFCETQERVNEVYDMLYKNGISVHKIHGGMLQTDRLENMNDFRLGKVQF 292

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI ++ HV N+D+P  A+NYIHRIGRT R G+ G A +L++K+D K   
Sbjct: 293 LVATDVAARGIDIENISHVINYDLPREAQNYIHRIGRTARIGKAGIAISLLSKDDYKRRM 352

Query: 359 AIEKLIEKKVD 369
            IE   E   D
Sbjct: 353 CIEDYTETSFD 363


>gi|119510101|ref|ZP_01629241.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414]
 gi|119465288|gb|EAW46185.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414]
          Length = 500

 Score =  265 bits (678), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 142/362 (39%), Positives = 215/362 (59%), Gaps = 5/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS K V  + + G+  PT IQ + IP +L   DV G +QTGTGKTA+F LP+L
Sbjct: 3   LSFQELGLSQKRVEQLENIGFTTPTNIQTQAIPQLLAGRDVVGQSQTGTGKTAAFSLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+     V+    L+L PTRELA QV D   ++  +  L +  + GG   E Q  +L+
Sbjct: 63  EQLDVNHKAVQ---ALVLAPTRELAIQVHDAINQFVGDEGLRILAIYGGQSIERQMMQLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++D  +RG L ++ ++  V+DEAD ML MGFI  +  I S  P  RQT
Sbjct: 120 RGVHMVVGTPGRMIDLLDRGCLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPKERQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++ +   FL+NP  + V  P ++   I          ++K  A LQ +L+
Sbjct: 180 ALFSATMPPSIRMIVNKFLRNPATVTVEQPKASPNKINQVAYLIPRHWTKAKA-LQPILE 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D  +  +IF   ++    L + L+  G SV   HG++ Q++R ++L+ F+   ++ +V
Sbjct: 239 MEDP-ETALIFVRTRRTAAELTNLLQGAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV NFD+P+ AE Y+HRIGRTGRAG+ G A +LV   + +   A 
Sbjct: 298 ATDIAARGLDVDLLSHVINFDLPDSAETYVHRIGRTGRAGKEGTAISLVQPFERRKQQAF 357

Query: 361 EK 362
           E+
Sbjct: 358 ER 359


>gi|170758353|ref|YP_001787402.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169405342|gb|ACA53753.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 376

 Score =  265 bits (678), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 149/368 (40%), Positives = 222/368 (60%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS  ++  + +   ++PTPIQ ++I L+   +DV   AQTGTGKT +F+LPM 
Sbjct: 2   IKFEELGLSDSIIDILKNQRIIEPTPIQEESIMLIKNGNDVIAEAQTGTGKTLAFLLPMF 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E     +   + LI+ PTRELA Q+ +   K  K  +L +    GG    +Q KKL+
Sbjct: 62  ---ENISPNINAIQGLIITPTRELAIQITEEAMKLKKAKDLNILAAYGGKDIGSQIKKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH NR  L   +++ LV+DEAD ML MGF   +++I    P  RQT
Sbjct: 119 NNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNEVRSIIENTPRKRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++   +++PK I +     T + I+   + T  +  +K   L ++L 
Sbjct: 179 LCFSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNIKQVLIETTDR--RKQEDLCKILN 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     IIFC  K+ V NL   L K+G++   +HG++ Q  R +I+ +FK   IQ ++
Sbjct: 237 EENPFM-AIIFCRTKRRVDNLEEDLYKKGYNCEKLHGSMTQPKRERIMRSFKNLEIQYLI 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HVFN+D+P  +E+YIHRIGRTGRAG  G  F  VA +D + +D I
Sbjct: 296 ATDVAARGLDITGVTHVFNYDIPENSESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLDMI 355

Query: 361 EKLIEKKV 368
           EK I+ K+
Sbjct: 356 EKEIKFKI 363


>gi|71734815|ref|YP_276470.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555368|gb|AAZ34579.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 450

 Score =  265 bits (678), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 218/371 (58%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 9   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 68

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               +E  +      R L+L PTRELA QV ++  +Y ++  L+     GG+    Q  K
Sbjct: 69  QRLTMEGPKVAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 128

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 129 LRKGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 188

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A +++   V       +K  L   L
Sbjct: 189 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 246

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++        ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 247 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 305

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 306 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 365

Query: 359 AIEKLIEKKVD 369
           AIE L  + ++
Sbjct: 366 AIEVLTRQTLE 376


>gi|91200410|emb|CAJ73457.1| strongly similar to ATP-dependent RNA helicase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 524

 Score =  265 bits (678), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 143/365 (39%), Positives = 219/365 (60%), Gaps = 15/365 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F  LGLS   +  + + GY +PTPIQ KTIP +L    D+ G AQTGTGKTA+F LP+L 
Sbjct: 4   FESLGLSESTLKVLKEKGYEEPTPIQQKTIPAILSGTKDIVGQAQTGTGKTAAFGLPVLE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +    V+    L+L PTRELA QVA+          L++  + G    E Q + L++
Sbjct: 64  LLPEKSKNVQ---ALVLTPTRELAIQVAEELNSLKGKKRLSIVPIYGRQSMELQLRSLKK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR+LDH  RG L +  I  LV+DEAD ML+MGFI  ++ I       ++TL
Sbjct: 121 GIDIVVGTPGRVLDHLKRGTLKIGKISFLVLDEADEMLNMGFIDDVREIMENTGHEKRTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQQLL 239
           LFSATM  E+ ++++N++++    +VN    T    +  +   +A  ++   C ++    
Sbjct: 181 LFSATMPFEIMQIAKNYMRDFDVQKVNAGQLTVSQTDQIYFEVFAADKFEALCRII---- 236

Query: 240 QSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              D  K+  G++FC  K +V  +   L ++G+   A+HG+I Q  R KIL+ FK+  I 
Sbjct: 237 ---DIEKDFYGLVFCRTKIDVDAVASHLIERGYDADALHGDISQSLREKILAKFKKRQIN 293

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARGLDI ++ HV N+ +P   E+Y+HRIGRTGRAG+ G A T +  E+ + +
Sbjct: 294 ILIATDVAARGLDIHNLSHVINYSLPQDPESYVHRIGRTGRAGKGGIAITFITPEEYRKL 353

Query: 358 DAIEK 362
             I+K
Sbjct: 354 QFIQK 358


>gi|224477065|ref|YP_002634671.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421672|emb|CAL28486.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 507

 Score =  265 bits (678), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 145/384 (37%), Positives = 224/384 (58%), Gaps = 17/384 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F DLG+S K    + + G+ +PTPIQ  +IP  L   D+ G AQTGTGKT +F +P++  
Sbjct: 4   FKDLGVSDKTAETLGNMGFEEPTPIQTDSIPYALHGLDILGQAQTGTGKTGAFGIPLIEK 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++K   +      LIL PTRELA QVA+    + +   + VA + GG+P   Q K L++
Sbjct: 64  VVDKEGVQA-----LILAPTRELAMQVAEQLRAFSRGQRVQVATVFGGMPIGRQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180
           G  +++ TPGR++DH NR  L  ++I+ L+IDEAD M++MGFI  ++ I   +P   RQT
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDDIKTLIIDEADEMMNMGFIDDMRFIMDHLPSEDRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +Q + + F+++PK ++      +   I+  +  T  +  +K       L 
Sbjct: 179 MLFSATMPKAIQTLVQQFMKSPKIVKTMNNEMSDPQIDEYY--TIVKELEKFETFTNFLD 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++V
Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  I
Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGIAVTFVNPIEMDYIRQI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E+  +++       + +L PP  K
Sbjct: 356 EQTNDRR-------MRALRPPHRK 372


>gi|228915063|ref|ZP_04078662.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228844597|gb|EEM89649.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 447

 Score =  265 bits (678), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 143/364 (39%), Positives = 222/364 (60%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP   
Sbjct: 3   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLP--- 59

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
           ILEK        + LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 60  ILEKIDPECGDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356

Query: 361 EKLI 364
           EK +
Sbjct: 357 EKTL 360


>gi|313672966|ref|YP_004051077.1| dead/deah box helicase domain protein [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939722|gb|ADR18914.1| DEAD/DEAH box helicase domain protein [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 528

 Score =  265 bits (678), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 141/358 (39%), Positives = 214/358 (59%), Gaps = 11/358 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F +LGLS  V+ A+   G+ +PTPIQ   IP +LQ   D+ G AQTGTGKTA+F LP++ 
Sbjct: 7   FKELGLSENVLKALSKKGFEEPTPIQELVIPKLLQGERDIVGQAQTGTGKTAAFGLPLIE 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+     V+    ++L PTRELA QVA+          L +  + GG   E Q ++LE 
Sbjct: 67  LLDDKSPFVQ---AIVLTPTRELALQVAEEMNSLKGKKRLNIVPIYGGQSMELQLRRLEN 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            A +++ TPGR++DH NR  L +N ++ +V+DEAD ML+MGFI  I+ I       ++ L
Sbjct: 124 NAHIVVGTPGRVIDHINRKTLRLNKLKFMVLDEADEMLNMGFIEDIEEIIKHTNEDKRML 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+  +++ ++++ + + V T   T E  E  +     +        + L + 
Sbjct: 184 LFSATMPKEILNIAKKYMKDYEVLAVKTKQLTTELTEQIYFQVREEDK-----FEALCRI 238

Query: 242 QDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +D  K   G+IFC  K +V  +C+ L  +G++  A+HG+I Q  R +IL  FK   I ++
Sbjct: 239 RDMEKEFYGLIFCRTKVDVDTVCNRLIDRGYNAEALHGDISQYQRERILKRFKAKQINML 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           VA+D+AARG+DI D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T V  E+ + +
Sbjct: 299 VATDVAARGIDISDLTHVINYSLPQDPESYVHRIGRTGRAGKEGTAITFVTPEEYRKL 356


>gi|229087937|ref|ZP_04220048.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-44]
 gi|228695405|gb|EEL48279.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-44]
          Length = 481

 Score =  265 bits (678), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 133/365 (36%), Positives = 223/365 (61%), Gaps = 10/365 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  LS +++ A+    Y +PT +Q K IP+ L+R D+   +QTG+GKTASF +P+  
Sbjct: 5   NFKEYALSGEIIRALTSLKYEQPTEVQGKVIPIALERKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ LIL PTRELAAQV ++    G+   +    + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALILTPTRELAAQVKEDITNIGRFKRIKATAIYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G   +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL--L 239
           LFSAT+ ++++ +S  ++++P  IE+     T + IEH  +    +  +K +LL+ +  +
Sbjct: 182 LFSATLPEDVENLSRTYMESPINIEITASGITTDKIEHRILEVREE--EKFSLLKDITTV 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +S D+    IIFC  ++NV ++   L++  +    +HG + Q  R  ++++FK G  + +
Sbjct: 240 ESPDSC---IIFCRTQENVDHVFRQLKRSSYPCDKLHGGMIQEDRFAVMNDFKRGKFRYL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + +  
Sbjct: 297 VATDVAARGIDIENITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEERFLAE 356

Query: 360 IEKLI 364
           IE+ I
Sbjct: 357 IEEYI 361


>gi|42784637|ref|NP_981884.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987]
 gi|42740569|gb|AAS44492.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           ATCC 10987]
          Length = 481

 Score =  265 bits (678), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 133/362 (36%), Positives = 221/362 (61%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FFEYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  ++  P  IE+     T + IEH      A   +K +LL+ +   +
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFE--AIEDEKFSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|312129451|ref|YP_003996791.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311905997|gb|ADQ16438.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 619

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 152/411 (36%), Positives = 238/411 (57%), Gaps = 20/411 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++L +S  +V AV + G+ + TPIQ   IP+V+   DV G AQTGTGKTA+F +P +
Sbjct: 68  LKFSELPISDYIVKAVEEMGFTESTPIQTAAIPVVMSGRDVIGQAQTGTGKTAAFGIPAI 127

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNF---EKYGKNYNLTVALLIGGIPFEAQNK 117
              E   A  R  + LIL PTRELA QV +      KY K   L V+ + GG  +E Q  
Sbjct: 128 ---EHVNAEDRNTQVLILCPTRELALQVKEQLTLLAKYKKG--LLVSAIYGGESYERQFA 182

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+RG  +++ TPGRI+DH  +  L ++NI ++++DEAD ML+MGF   I+ I S     
Sbjct: 183 NLKRGTQIVVGTPGRIMDHIEKKTLKLDNISMVILDEADEMLNMGFREDIEQILSFAKED 242

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSATM+ E+  +++ F  +P+ ++V     T   IE  +     +   K  L+ +
Sbjct: 243 RQTVLFSATMSKEILNITKKFQNDPEIVKVTRKEITNTNIEQSYY--LVKKEAKFELMVR 300

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+   D ++  ++FCN K  V  +   L+  G++   +HG++ Q +R ++++ F+ G  +
Sbjct: 301 LIDVHD-LQLMLVFCNTKSKVDEIVEELQANGYAAEGLHGDMRQAARNQVMNKFRNGNTK 359

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+  V  V N+D+P   E Y+HRIGRTGRAG+ GKAF  + K D   +
Sbjct: 360 ILVATDVAARGIDVSGVDAVINYDLPMDLEYYVHRIGRTGRAGKLGKAFLFITKRDRSRM 419

Query: 358 DAIEKLIEKKVDW----LNGDL--SSLNPPLEKIDIAQHNHARKNNPIPQK 402
             +E+  +  +       + DL  S +N  +EKI   + N     NP  +K
Sbjct: 420 RDLEQYTKVAIPQGKIPTSADLEKSRINKFVEKI---RENIVEDTNPAFEK 467


>gi|298488858|ref|ZP_07006883.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298156611|gb|EFH97706.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 442

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 218/371 (58%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               +E  +      R L+L PTRELA QV ++  +Y ++  L+     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A +++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++        ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVD 369
           AIE L  + ++
Sbjct: 358 AIEVLTRQTLE 368


>gi|23308803|ref|NP_599999.2| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62389660|ref|YP_225062.1| ATP-dependent RNA helicase protein [Corynebacterium glutamicum ATCC
           13032]
 gi|21323537|dbj|BAB98164.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
           ATCC 13032]
 gi|41324995|emb|CAF19476.1| PROBABLE ATP-DEPENDENT RNA HELICASE PROTEIN [Corynebacterium
           glutamicum ATCC 13032]
          Length = 424

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 152/408 (37%), Positives = 222/408 (54%), Gaps = 22/408 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +LG++ ++  A+   G  +   IQ  T+P+ L  HD  G A+TG GKT  F +P+L  
Sbjct: 10  FTELGVAVEITDALEALGINRTFAIQEYTLPIALDGHDFIGQARTGMGKTYGFGVPLLDR 69

Query: 62  ILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + +          PR L++ PTRELA QV D+ ++   N  L +    GG P+E Q   L
Sbjct: 70  VFDSADVAETDGTPRALVIVPTRELAVQVGDDLQRAATNLPLKIFTFYGGTPYEEQIDAL 129

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G DV++ TPGR+LD   RG L ++ + ILV+DEAD MLD+GF+P I+ I   +    Q
Sbjct: 130 KVGVDVVVGTPGRLLDLHKRGALSLDKVAILVLDEADEMLDLGFLPDIEKILRALTHQHQ 189

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   +  ++ +FL  P  I   T  ++A       V   A    K A+  ++L
Sbjct: 190 TMLFSATMPGAILTLARSFLNKPVHIRAETSDASATHKTTRQVVFQAHKMDKEAITAKIL 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           QS+D  K  IIF   K+    +   L  +GFSV ++HG++ Q +R K L+ F+ G I ++
Sbjct: 250 QSKDRGKT-IIFARTKRTAAQVAEDLASRGFSVGSVHGDMGQPAREKSLNAFRTGKIDIL 308

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV HV N+  P+    Y+HRIGRTGRAG +G A TLV  ++      
Sbjct: 309 VATDVAARGIDVDDVTHVINYQTPDDPMTYVHRIGRTGRAGHNGTAVTLVGYDETLKWTV 368

Query: 360 IEKLIEKKVDWLNGDLSSLNPP---------LEKIDIAQHNHARKNNP 398
           I+  +E         L   NPP         LE +DI +    R   P
Sbjct: 369 IDNELE---------LGQPNPPQWFSTSPELLETLDIPEGVTERVGPP 407


>gi|120598331|ref|YP_962905.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120558424|gb|ABM24351.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 427

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 145/365 (39%), Positives = 210/365 (57%), Gaps = 10/365 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+   ++  + +  YV PTP+Q  TIP VL   DV   A TG+GKTA+F +P+L  
Sbjct: 11  FAQLGIIAPLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQ 70

Query: 63  LEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNK 117
           L   +   +     R L+L PTRELA QVAD+F  Y  + N  L +    GG+   AQ +
Sbjct: 71  LVDAKTEDKTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQ 130

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADVL+ TPGR+LD  +   + +N +  LV+DEADRML +GF   +  +   +P  
Sbjct: 131 SLRSGADVLVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAK 190

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTLLFSAT  +E+++++   L NP   ++    S  E+  H  V T  +   K ALL  
Sbjct: 191 KQTLLFSATFPEEVRELTAKLLNNPLEYQLQ---SEQESTIHQRVITVNR-PMKTALLAH 246

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++ +      +IF + K    +L   L K+G +    HG+  Q +R ++L  FK G I 
Sbjct: 247 LIK-EHQWSQALIFVSAKNTCNHLAQKLSKRGITAEVFHGDKAQGARTRVLDGFKNGEIS 305

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARG+DI  +  V NFD+P    +Y+HRIGR+GRAG  G A TL++ ED  H 
Sbjct: 306 VLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHF 365

Query: 358 DAIEK 362
             IEK
Sbjct: 366 GVIEK 370


>gi|146300157|ref|YP_001194748.1| DEAD/DEAH box helicase domain-containing protein [Flavobacterium
           johnsoniae UW101]
 gi|146154575|gb|ABQ05429.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae
           UW101]
          Length = 634

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 137/371 (36%), Positives = 228/371 (61%), Gaps = 12/371 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61
           F  LGL+  ++ A+LD G+  P+ +Q K IPL+L++  D+  +AQTGTGKTA+F  P++ 
Sbjct: 4   FEQLGLNESLLKAILDLGFENPSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGFPLIQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            ++   A  R  + L+L PTREL  Q+ +   N+ KY K  N  V  + GG     Q ++
Sbjct: 64  KID---ADNRNTQALVLSPTRELCLQITNELKNYSKYEKGIN--VVAVYGGASITEQARE 118

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++RGA +++ TPGR+ D  NRG + + NI+  ++DEAD ML+MGF   I +I S  P  +
Sbjct: 119 IKRGAQIIVATPGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYEDIVSILSDTPDQK 178

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            T LFSATM  E+ ++++ F+  P  I V   +S + T+ H F    A+   +   L++L
Sbjct: 179 NTWLFSATMPQEVARIAKQFMSEPVEITVGAKNSGSATVSHEFYLVNAR--DRYEALKRL 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +   + + ++FC  K++   +   L + G+S  A+HG++ Q  R  ++ +F+   IQ+
Sbjct: 237 ADANPDIFS-VVFCRTKRDTQAVAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQM 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ +V HV N+ +P+  E Y HR GRTGRAG+ G +  +V K +++ I 
Sbjct: 296 LVATDVAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKIS 355

Query: 359 AIEKLIEKKVD 369
           +IE++I++K +
Sbjct: 356 SIERIIKQKFE 366


>gi|330987668|gb|EGH85771.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 442

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 218/371 (58%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               +E  +      R L+L PTRELA QV ++  +Y ++  L+     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A +++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++        ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVD 369
           AIE L  + ++
Sbjct: 358 AIEVLTRQTLE 368


>gi|150400366|ref|YP_001324133.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           vannielii SB]
 gi|150013069|gb|ABR55521.1| DEAD/DEAH box helicase domain protein [Methanococcus vannielii SB]
          Length = 538

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 139/367 (37%), Positives = 222/367 (60%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F +LGLS  ++ A+   G+ +PTPIQ K IP++++   D+ G AQTGTGKTA+F LP++ 
Sbjct: 4   FRNLGLSEDIINALEKKGFTEPTPIQEKAIPILIKGEMDIVGQAQTGTGKTAAFGLPIIE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++      R  + LIL PTRELA QVA+  +    +  L +  + GG   + Q K+L+R
Sbjct: 64  TID---TNSRNTQALILTPTRELAIQVAEEIDSLKGSRRLNIFPVYGGQSIDRQIKELKR 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGRILDH +R  + + N+  +V+DEAD ML+MGFI  ++ I   V   ++ L
Sbjct: 121 GVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVNTEKRML 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ D + K++EN++++ + I+V     T    +  F     +   K  LL +++ +
Sbjct: 181 LFSATLPDSIMKLAENYMRDYETIKVKKQQLTTNLTDQSFYEISPR--DKFELLSRIMDT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +     G+IFC  K +V +L   L ++G+    +HG++ Q  R K L  FK     ++VA
Sbjct: 239 EKEF-YGLIFCKTKADVDDLSARLVERGYPAEGLHGDMTQAQREKTLDKFKRRRTTVLVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HRIGRTGRAG+ G A T V   + +    I 
Sbjct: 298 TDVAARGIDINELTHVVNYDLPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIL 357

Query: 362 KLIEKKV 368
           K+ + ++
Sbjct: 358 KIAKTEI 364


>gi|108760847|ref|YP_634735.1| ATP-dependent RNA helicase DbpA [Myxococcus xanthus DK 1622]
 gi|108464727|gb|ABF89912.1| ATP-independent RNA helicase DbpA [Myxococcus xanthus DK 1622]
          Length = 461

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 147/379 (38%), Positives = 229/379 (60%), Gaps = 10/379 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF+ L LSP ++  + +  +   TPIQ ++IP++LQ  D+ G AQTG+GKTA+F LP+L
Sbjct: 1   MDFSALALSPPLLQVLEELDFKTATPIQAQSIPVLLQGRDLVGQAQTGSGKTAAFALPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
              +K + + R  + L+L PTREL AQVA    + G+    L V +L GG P   Q + L
Sbjct: 61  ---QKVQLQHRKVQALVLCPTRELCAQVAGEIRRLGRRLPGLQVLVLAGGQPIRPQLEAL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+GA + + TPGR++D  +R  L    +  +V+DEADRMLDMGF   ++ I   +P  RQ
Sbjct: 118 EKGAHLAVGTPGRVMDVLDREALETRQLSTVVLDEADRMLDMGFREDMERILGAMPPRRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT   +++ +S +F + P R+ V   ++  +  +   V    +   K ALL ++L
Sbjct: 178 TVLFSATFPPDIEALSRDFQRQPVRVTVEAATAGPDIQQ---VRYDCEPGDKQALLLRIL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +      + I+FCN K  VV L  SL   G SV  + G+++Q  R ++++ F+  + +++
Sbjct: 235 RHYQP-ASAIVFCNLKATVVELKKSLSASGVSVDGLQGDLEQFERDRVMAKFRNQSTRVL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A RG+D+  +  V NFD+P +AE Y+HRIGRTGRAGR G A ++V   D + +D 
Sbjct: 294 IATDVAGRGIDVEALDAVINFDLPMQAEPYVHRIGRTGRAGRAGLAVSIVTPRDGRKVDD 353

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+  +   V    GD+ SL
Sbjct: 354 IQ--LATGVKLERGDVESL 370


>gi|257482171|ref|ZP_05636212.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 442

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 218/371 (58%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               +E  +      R L+L PTRELA QV ++  +Y ++  L+     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A +++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++        ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVD 369
           AIE L  + ++
Sbjct: 358 AIEVLTRQTLE 368


>gi|254482880|ref|ZP_05096117.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214036961|gb|EEB77631.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 465

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 147/391 (37%), Positives = 224/391 (57%), Gaps = 23/391 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL  +++  V D G+   +PIQ + +P  LQ HD  G AQTGTGKTA+F   ++TI
Sbjct: 85  FHDLGLRDELMHGVADLGFQYSSPIQAQVLPHTLQGHDAIGKAQTGTGKTAAF---LITI 141

Query: 63  LE-------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                    +G   V  PR L++ PTREL  Q+A +    GK+  L VA LIGG+ ++ Q
Sbjct: 142 FNDQLCHPIEGERFVGEPRALVIAPTRELVMQIAADAADLGKHTGLQVATLIGGMDYQKQ 201

Query: 116 NKKLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +L+R   D+++ TPGR+LD   R  L ++++E+LV+DEADRMLDMGFIP ++ I    
Sbjct: 202 LNRLQRDVIDLVVATPGRLLDFMGRRDLFLDHVEVLVLDEADRMLDMGFIPQVKRIVRAC 261

Query: 175 PF--TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           P   +RQTLLFSAT T ++  +S+ +   P  +E+   S   +T++       ++  ++ 
Sbjct: 262 PRKESRQTLLFSATFTQDIINLSQQWTYEPVTVEIEPDSVATDTVDQKIYMVSSE--QRF 319

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            +L  L++S D   + I+F N++  V  L   L K G     + G I Q  R + L  FK
Sbjct: 320 RVLNNLVRSDDC-SSVIVFANRRDQVRRLHERLRKAGVKCGVLSGEIPQAKRTRTLEQFK 378

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G I ++VA+D+A RG+ +  + HV N+++P   E+Y+HRIGRTGRAG  G + +  +++
Sbjct: 379 NGEITVLVATDVAGRGIHVDGISHVVNYNLPEDPEDYVHRIGRTGRAGATGTSISFASED 438

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
           D   +  +E L       L   L   +PP E
Sbjct: 439 DAFLLPDLEAL-------LGAPLECTHPPAE 462


>gi|307178385|gb|EFN67130.1| Probable ATP-dependent RNA helicase DDX47 [Camponotus floridanus]
          Length = 435

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 140/368 (38%), Positives = 221/368 (60%), Gaps = 7/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           D+  LGL   +    +   + +PT IQ + IPLVL+  DV G+A+TG+GKTA+F LP+L 
Sbjct: 3   DWKALGLVDTLCTTCIQLKWNEPTKIQREAIPLVLEGKDVIGLAETGSGKTAAFALPILQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R      LIL PTRELA Q+++ FE  G +  +  A+++GG+   AQ   LE+
Sbjct: 63  ALLENPQRYF---ALILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMHAQGLLLEK 119

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  I+ L++DEADR+L+M F   +  I  ++P  R+T
Sbjct: 120 KPHIIIATPGRLVDHLENTKGFNLRQIKFLIMDEADRILNMDFEVEVNKILRVMPRERRT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATMT ++QK+    L+NP ++EV+T   T E ++  ++    ++ K   L+  L  
Sbjct: 180 LLFSATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKF-KDVYLVHIL-- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    N +IFC    N V     L   GF+   +HG + Q  R+  L+ F+     +++
Sbjct: 237 NELAGNNFMIFCGTCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFRAKNRSILI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR G++ T + + D++    I
Sbjct: 297 STDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFITQYDVELYQRI 356

Query: 361 EKLIEKKV 368
           E+LI K++
Sbjct: 357 EQLISKQL 364


>gi|296329829|ref|ZP_06872313.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305676555|ref|YP_003868227.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296152868|gb|EFG93733.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305414799|gb|ADM39918.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 479

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 134/362 (37%), Positives = 218/362 (60%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  +S  ++ A+   GY +PT +Q   IP  L+R D+   +QTG+GKTASF +P+  +
Sbjct: 4   FKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLCEL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +    +   P+ LIL PTRELA QV ++    G+   +    + G   F+ Q  +L++ 
Sbjct: 64  ADWDENK---PQALILTPTRELAVQVKEDITNIGRFKRIKATSVFGKSSFDKQKAELKQK 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGR+LDH  +G L ++ +  LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 121 SHMVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTML 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++K+S  ++QNP+ IE+     T + IEH  +    +   K +LL+ +L ++
Sbjct: 181 FSATLPEDIEKLSRQYMQNPQHIEIKAAGLTTKNIEHAVIQVREE--NKFSLLKDVLMTE 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  K++V  L   L+  G+    IHG + Q  R  +++ FK G  + +VA+
Sbjct: 239 NP-DSSIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++  V N+D+P   E+Y+HR GRTGRAG  GKA + V   + + +  IE+
Sbjct: 298 DVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEE 357

Query: 363 LI 364
            I
Sbjct: 358 YI 359


>gi|293331893|ref|NP_001169380.1| hypothetical protein LOC100383248 [Zea mays]
 gi|224029005|gb|ACN33578.1| unknown [Zea mays]
          Length = 498

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 134/351 (38%), Positives = 213/351 (60%), Gaps = 8/351 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G   +++  +  AG+  PTPIQ ++ P+ +Q  DV  IA+TG+GKT  ++LP    
Sbjct: 152 FEAGGFPSEILKEIQRAGFASPTPIQAQSWPIAMQNQDVVAIAKTGSGKTLGYLLPGFMH 211

Query: 63  LEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++ +   R  P  L+L PTRELA Q+ D   K+G++  ++   L GG P   Q + L+R
Sbjct: 212 IKRLQNSTRNGPTVLVLAPTRELATQILDEAVKFGRSSRISCTCLYGGAPKGPQLRDLDR 271

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR+ D     K+ +  +  LV+DEADRMLDMGF P I+ I   +P  RQTL
Sbjct: 272 GVDVVVATPGRLNDILEMRKVSLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPHRRQTL 331

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSS---TAETIEHCFVATYAQYSKKCALLQQL 238
           +++AT   E+++++++ L +P ++ + +  S    +   +H  + T ++  ++   L+Q+
Sbjct: 332 MYTATWPKEVRRIADDLLVHPVQVTIGSVDSLVANSSITQHVEIITPSEKQRR---LEQI 388

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+SQD+    +IFC  K+    L  +L +Q F   AIHG+  Q  R K+L+ F+ G   +
Sbjct: 389 LRSQDSGSKILIFCTTKRMCDQLARTLTRQ-FGASAIHGDKSQSEREKVLNQFRSGRSPI 447

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G A+  +
Sbjct: 448 LVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYIFL 498


>gi|317477978|ref|ZP_07937161.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
 gi|316905892|gb|EFV27663.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
          Length = 650

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 139/367 (37%), Positives = 227/367 (61%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+SP++  A+ + GY +P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++ 
Sbjct: 4   FEELGVSPEIRRAIEEMGYEQPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
             +K     R+P++LIL PTREL  Q+A +   Y K  + L V  + GG   E+Q + L+
Sbjct: 63  --QKINVNNRIPQSLILCPTRELCLQIAGDLNDYSKYTDGLRVLPVYGGSSIESQIRALK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  + +  I+ +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLATIQNVVMDEADEMLNMGFTDSINAILADVPQERNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+ ++S+ +L++ K I +   + +   ++H     +A+   K A L++++ 
Sbjct: 181 LLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVAFCVHAK--DKYAALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+V
Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357

Query: 361 EKLIEKK 367
           E++I KK
Sbjct: 358 ERIIGKK 364


>gi|332030497|gb|EGI70185.1| Putative ATP-dependent RNA helicase DDX47 [Acromyrmex echinatior]
          Length = 448

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 142/367 (38%), Positives = 220/367 (59%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + DLGL   +    LD  + +PT IQ + IPL LQ  DV G+A+TG+GKTA+F LP+L  
Sbjct: 20  WKDLGLVDILCKTCLDLKWKEPTRIQQEAIPLTLQGKDVIGLAETGSGKTAAFALPILQA 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +   R      LIL PTRELA Q+++ F+  G +  +   +L+GG+   AQ   LE+ 
Sbjct: 80  LLENPQRYF---ALILTPTRELAFQISEQFDALGSSIGVKTVVLVGGMDMHAQGMILEKK 136

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+TL
Sbjct: 137 PHIIIATPGRLVDHLENTKGFNLRQLKFLVMDEADRILNMDFEVEVDKILRVIPRERRTL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT ++QK+    L+NP ++EV+T   T E ++  ++    ++ K   L+  L  +
Sbjct: 197 LFSATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKF-KDVYLVHIL--N 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + +IFC    N V     L   GF+   +HG + Q  R+  L+ FK     ++++
Sbjct: 254 ELAGNSFMIFCGTCNNTVRTALLLRNLGFTAVPLHGQMTQNKRIAALTKFKAKNRSILIS 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR G++ T V + D++    IE
Sbjct: 314 TDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIE 373

Query: 362 KLIEKKV 368
           +LI K++
Sbjct: 374 QLISKQL 380


>gi|325287711|ref|YP_004263501.1| DEAD/DEAH box helicase domain-containing protein [Cellulophaga
           lytica DSM 7489]
 gi|324323165|gb|ADY30630.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
           7489]
          Length = 450

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 150/403 (37%), Positives = 235/403 (58%), Gaps = 15/403 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L  ++  A+ D G+  PTPIQ +  P+V+   D+ GIAQTGTGKT +++LP+L  
Sbjct: 4   FSDFNLKKQLHYAIDDLGFTTPTPIQKEAFPVVMSGKDMIGIAQTGTGKTFAYMLPILQD 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L    ++ + PR LIL PTREL  QV +    + K  N+ V  + GG     Q + + +G
Sbjct: 64  L--AFSKQKNPRVLILVPTRELVLQVVEQINSFAKYINVRVMGVYGGTNMNTQAQAVSQG 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           +D+++ TPGR+ D      L + +I+ LVIDE D MLD+GF   I NI  L+P  RQ ++
Sbjct: 122 SDIIVATPGRLYDLVLARALQLKSIKKLVIDEVDVMLDLGFRFQITNIFELLPTRRQNIM 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATMTD+++ +  +F  NP+++ +    +  + I     A    Y+ K  LL  LL+ +
Sbjct: 182 FSATMTDDVETLINDFFINPEKVSIAVSGTPLDNISQTCYAVPNFYT-KANLLVHLLKDK 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFS--VCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +T K  ++F   K+    L +SLE + FS  +C IH N  Q  R++ ++ F EG  +++V
Sbjct: 241 ETYKKVLVFVANKRFADRLFNSLE-EIFSDELCVIHSNKTQNYRIRSINQFDEGINRILV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+ ARGLD+  + HV NFD P   ENY+HRIGRTGRA   G +     +++ ++ DAI
Sbjct: 300 TTDVMARGLDLDKISHVINFDTPTFPENYMHRIGRTGRAEEQGNSILFYTEKEEEYKDAI 359

Query: 361 EKLIEKKVDWL----NGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           E+L++ K+  +    + ++S    P E+  I +H     +NPI
Sbjct: 360 EELMDYKIPTITIPESVEISKELIPEERPKILEH-----HNPI 397


>gi|312140644|ref|YP_004007980.1| dead/deah box helicase [Rhodococcus equi 103S]
 gi|325675727|ref|ZP_08155411.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
 gi|311889983|emb|CBH49301.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
 gi|325553698|gb|EGD23376.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
          Length = 545

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 160/440 (36%), Positives = 241/440 (54%), Gaps = 28/440 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F +LG+  ++V A+ + G  +   IQ  T+PL L   D+ G A+TG GKT  F +P+L  
Sbjct: 43  FGELGVRDEIVKALAEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGIPLLHR 102

Query: 61  -TILEKGRARVR-MPRTLILEPTRELAAQVADNFE---KYGKN--YNLTVALLIGGIPFE 113
            +  + G   +   PR L++ PTREL  QV  + E   KY K+    L V  + GG P+E
Sbjct: 103 VSTADSGTTPLDGTPRALVIVPTRELCVQVTQDLENASKYLKSGEKKLEVLSIYGGRPYE 162

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L +G DV++ TPGR+LD  N+G L++  + +LV+DEAD MLD+GF+P I+ I  +
Sbjct: 163 QQIDALRKGVDVVVGTPGRLLDLANQGHLILGKVGVLVLDEADEMLDLGFLPDIERILGM 222

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA---ETIEHCFVATYAQYSK 230
           VP  RQT+LFSATM   +  ++  FL  P  I      S+A    T +H +    A    
Sbjct: 223 VPDKRQTMLFSATMPGPIITLARTFLTQPTHIRAEEADSSAVHERTTQHIY---RAHALD 279

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K  ++ ++LQ+ D     +IF   K+    +   L ++GF+V A+HG++ Q +R K L+ 
Sbjct: 280 KAEMVARVLQA-DGRGATMIFTRTKRTAQKVADDLNERGFNVGAVHGDLGQIAREKALAG 338

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G + ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G A TLV 
Sbjct: 339 FRSGKVDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAITLVD 398

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            +D+     I+K +   V            P+E    + H +  ++  IP  + G  R+ 
Sbjct: 399 WDDVPRWQLIDKALALGV----------PDPVETYSSSPHLY--EDLGIPTDAKGSIRKP 446

Query: 411 KNYSSQKSHIPLKESEKISK 430
           +     K H     +EK  K
Sbjct: 447 RAERPAKEHKDAPAAEKSEK 466


>gi|242093508|ref|XP_002437244.1| hypothetical protein SORBIDRAFT_10g023440 [Sorghum bicolor]
 gi|241915467|gb|EER88611.1| hypothetical protein SORBIDRAFT_10g023440 [Sorghum bicolor]
          Length = 567

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 154/402 (38%), Positives = 223/402 (55%), Gaps = 35/402 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+  V+  V   GY  PTP+Q   +P+V+   D+   AQTG+GKTA+F LP+++ 
Sbjct: 58  FEAAGLAEAVLRNVARCGYDNPTPVQRYAMPIVMAGRDLMACAQTGSGKTAAFCLPVVSG 117

Query: 63  L----------------EKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105
           L                ++G   RV  PR L+L PTRELAAQ+ +   K+     L V +
Sbjct: 118 LVVPPAGGGSGYGYGRRDRGSFDRVAKPRALVLAPTRELAAQINEEARKFSFQTGLRVVV 177

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
             GG P   Q + LERG D+L+ TPGR++D   R ++ +  I+ LV+DEADRMLDMGF P
Sbjct: 178 AYGGTPMYNQLRDLERGVDLLVATPGRLVDMVERSRISLEGIKYLVMDEADRMLDMGFEP 237

Query: 166 YIQNITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
            I+ I  ++       RQT+LFSAT   E+Q+++ +FL N   + V    S+ + IE   
Sbjct: 238 QIRKIVDMMNMPKKSVRQTMLFSATFPPEIQRLASDFLYNYIFVTVGRVGSSTDLIEQKL 297

Query: 222 VATYAQYSKKCALLQQLLQSQDT-MKNG-------IIFCNQKKNVVNLCHSLEKQGFSVC 273
              +    +K   L  LLQ Q   + N        ++F   K+   +L + L+ +GF   
Sbjct: 298 --EFVNDGEKRGFLIDLLQKQSAGVANSKLQQPLTLVFVETKREADSLRYFLQSKGFPAT 355

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
           AIHG+  Q+ R   L +FK GT  +MVA+D+A+RGLD+P+V HV N+D+P   E+Y+HRI
Sbjct: 356 AIHGDRTQQERESALKSFKSGTTPIMVATDVASRGLDVPNVAHVINYDLPKSIEDYVHRI 415

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDA-IEKLIEKKVD---WL 371
           GRTGRAG+ G A     + +       +E + E K D   WL
Sbjct: 416 GRTGRAGKAGIATAFFTESNHPLAKGLLELMTEAKRDVPEWL 457


>gi|119776347|ref|YP_929087.1| ATP-dependent RNA helicase RhlB [Shewanella amazonensis SB2B]
 gi|189040038|sp|A1SAL1|RHLB_SHEAM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|119768847|gb|ABM01418.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis
           SB2B]
          Length = 439

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 151/401 (37%), Positives = 240/401 (59%), Gaps = 13/401 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FADL L  +V  A+ + G+   TPIQ  ++P++L++ D+ G AQTGTGKT +F++     
Sbjct: 11  FADLPLCDEVKQALNENGFEHCTPIQALSLPVLLEKKDIAGQAQTGTGKTLAFLVATFNH 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT       ++  PR +++ PTRELA Q+A +     K+  L V ++ GG  +EAQ K 
Sbjct: 71  LLTTPVPEHRQLNQPRAIVMAPTRELAIQIAKDATLLSKHSGLKVGIVYGGEGYEAQRKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G DVLI T GRI+D+  +G + +  I+ +V+DEADRM D+GFI  I+ + + +P  +
Sbjct: 131 LDKGVDVLIGTTGRIIDYVRQGVINLGAIQAVVLDEADRMFDLGFIKDIRFLFNRMPGAK 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           + L  LFSAT++ ++Q+++ + + +P ++E+     T+  I E  F   Y     K  LL
Sbjct: 191 ERLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSRNIKEEIF---YPSMEDKLKLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++ +D  +  I+F N K    NL  SLE  G  V  + G++ Q+ R+KIL  F +  
Sbjct: 248 HSLIE-EDWPEKAIVFANTKYQCENLWASLEADGHRVGLLTGDVPQKKRLKILEQFTQSE 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG+ G + +   +E   
Sbjct: 307 LDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEEYAL 366

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL--NPPLEKIDIAQHNHAR 394
           ++ AIE  I+  +   + D  +L   PP  KI    H   R
Sbjct: 367 NLPAIEDYIKHSIPVTSYDRDALIDIPPPVKIHRKPHAGGR 407


>gi|328956797|ref|YP_004374183.1| ATP-dependent RNA helicase RhlE [Carnobacterium sp. 17-4]
 gi|328673121|gb|AEB29167.1| ATP-dependent RNA helicase RhlE [Carnobacterium sp. 17-4]
          Length = 423

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 150/369 (40%), Positives = 223/369 (60%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  ++ A+ +AGY K TPIQ   IP ++   D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MLFNELELNQHLLHALKEAGYTKATPIQEDAIPHLMNNKDLLGCAQTGTGKTAAFALPIL 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I+E+        + LIL PTRELA Q+ D+F+ Y K   L + ++ GG+    Q   L
Sbjct: 61  QNIMEEKTIGKGAIKALILAPTRELAIQIGDSFQTYAKYLPLNIQVIFGGVSQNPQTATL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG D+L+ TPGR+LD   +G + +N ++  V+DEAD MLDMG +  +++I   +P  RQ
Sbjct: 121 KRGTDILVATPGRLLDLIRQGFVKLNQVDFFVLDEADMMLDMGMLRDVRHIIRELPKKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           ++ FSATM  E++K++   L NP ++ VN  SST E I+          + K  LL  LL
Sbjct: 181 SMFFSATMPSEIEKLAGTILSNPVKVVVNPVSSTVEVIQQNVYRVAK--TDKTNLLIYLL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +++  ++  ++F   K     +   L + GFS  AIHGN  Q +R + L NFK     ++
Sbjct: 239 KNKQ-VERSLVFSRTKHGANKIVKKLLQAGFSAEAIHGNKSQNARQQALENFKTMKTSVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P++  V  FD+P   E Y+HRIGRTGRAG  GKA +   + +   +  
Sbjct: 298 VATDIAARGIDVPELSQVIQFDLPEVPETYVHRIGRTGRAGLSGKAISFCDETESDLLRD 357

Query: 360 IEKLIEKKV 368
           IEKL ++KV
Sbjct: 358 IEKLSKRKV 366


>gi|228997517|ref|ZP_04157133.1| ATP-dependent RNA helicase [Bacillus mycoides Rock3-17]
 gi|228762256|gb|EEM11186.1| ATP-dependent RNA helicase [Bacillus mycoides Rock3-17]
          Length = 433

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 138/364 (37%), Positives = 223/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+V+   D+ G A+TGTGKT +FVLP+L 
Sbjct: 3   NFLELGISETFNHTLRENGIAEATPIQEKAIPVVMAGKDIIGQAKTGTGKTLAFVLPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    EK      N+ V  + GG     Q +KL+
Sbjct: 63  KIDPESSDVQ---ALIVAPTRELALQITTEIEKMLVHQENINVLAIYGGQDVAQQMRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  ++++N+ +LV+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETPESKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ +++ P+ I++ +   T   I+   + T    +K+ AL   + +
Sbjct: 180 MLFSATMPKDIKKLAKRYMKEPEMIQIQSAEVTVNNIKQRVIET-TDRAKQDALRHVMDR 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   +IFC  K+    L   L+  G++   +HG++ Q  R +++ +F++  IQ ++
Sbjct: 239 DQPFL--AVIFCRTKRRASKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFRDAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D  ++  I
Sbjct: 297 ATDVAARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGESGLAITFVAPKDEMYLKEI 356

Query: 361 EKLI 364
           EK I
Sbjct: 357 EKGI 360


>gi|304403873|ref|ZP_07385535.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304346851|gb|EFM12683.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 500

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 140/369 (37%), Positives = 215/369 (58%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LG+S ++   +   G  +PTP+Q K IPLVL   DV   AQTGTGKT +F LP+L  
Sbjct: 5   FSTLGVSQELTSVLSSYGITEPTPVQHKAIPLVLNGADVIVQAQTGTGKTLAFALPILER 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +   +    LIL PTRELA Q+     K  K     +    GG   E+Q +KL   
Sbjct: 65  IDTTKNHTQ---ALILTPTRELAIQITTELNKLAKTVGANILAAYGGQDVESQIRKLRNS 121

Query: 123 -ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180
              ++I TPGR+LDH  R  + +  I +LV+DEAD+ML MGF+P ++ I S +P   RQT
Sbjct: 122 WPHIVIATPGRLLDHLRRETIRLGKIRMLVLDEADQMLHMGFLPDVETIVSSMPRQHRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+   ++  P  + +     T + I    + T     K+  L++ + +
Sbjct: 182 MLFSATMPAQIRKLGAEYMNGPTDVNITPEKVTVDKIRQVAIET-TDRRKEDTLVELIGK 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   ++FC  K     L  +L+++G S   +HG++ Q  R +++  F++  +Q+++
Sbjct: 241 YQPYL--AVVFCRTKVRAKKLNEALQERGISSDELHGDLSQAKREQVMKRFRQARLQVLI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+DVP   E Y+HRIGRTGRAG  G A TLV+  DI  +  I
Sbjct: 299 ATDVAARGLDVEGVSHVFNYDVPQDPETYVHRIGRTGRAGNEGMAVTLVSSHDIGAVANI 358

Query: 361 EKLIEKKVD 369
           +K +  K++
Sbjct: 359 QKTLGVKIE 367


>gi|324329406|gb|ADY24666.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 481

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 133/362 (36%), Positives = 220/362 (60%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FFEYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++K+S  ++ +P  IE+     T + IEH          +K +LL+ +   +
Sbjct: 183 FSATLPEDVEKLSRTYMNSPTHIEIKAAGVTTDKIEHVLFEVIE--DEKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  + NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQDNVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|308370192|ref|ZP_07420594.2| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu002]
 gi|308378233|ref|ZP_07481964.2| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu009]
 gi|308380612|ref|ZP_07490534.2| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu011]
 gi|308406085|ref|ZP_07669502.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu012]
 gi|308325014|gb|EFP13865.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu002]
 gi|308353157|gb|EFP42008.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu009]
 gi|308360899|gb|EFP49750.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu011]
 gi|308364543|gb|EFP53394.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu012]
          Length = 524

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 148/381 (38%), Positives = 218/381 (57%), Gaps = 22/381 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+  ++V A+ + G  +P  IQ  T+PL L   DV G A+TG GKT +F +P+L  
Sbjct: 9   FAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQR 68

Query: 63  LEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGK--------------NYNLTVAL 105
           +  G   R     PR L++ PTREL  QV D+    GK                 L+V  
Sbjct: 69  ITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVS 128

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG P+E Q + L  GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P
Sbjct: 129 IYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLP 188

Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVA 223
            I+ I   +P  RQ++LFSATM D +  ++  F+  P  I    P S+A  +  E     
Sbjct: 189 DIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYR 248

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            +A    K  L+ ++LQ++D     +IF   K+    +   L ++GF+V A+HG++ Q +
Sbjct: 249 AHAL--DKVELVSRVLQARDRGAT-MIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLA 305

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R K L  F+ G I ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G
Sbjct: 306 REKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTG 365

Query: 344 KAFTLVAKEDIKHIDAIEKLI 364
            A TLV  +++     I++ +
Sbjct: 366 VAVTLVDWDELPRWSMIDQAL 386


>gi|332704960|ref|ZP_08425046.1| DNA/RNA helicase, Superfamily II [Lyngbya majuscula 3L]
 gi|332356312|gb|EGJ35766.1| DNA/RNA helicase, Superfamily II [Lyngbya majuscula 3L]
          Length = 469

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 217/369 (58%), Gaps = 5/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGLS   V  +   G+  PT IQ + IP +L  HDV G++QTGTGKTA+F LPML
Sbjct: 3   VSFQSLGLSESCVSQLEKIGFTTPTTIQAQAIPELLNGHDVLGMSQTGTGKTAAFSLPML 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  +   R  + LIL PTRELA QV      + ++  L +  + GG   E Q + L 
Sbjct: 63  DRIDLDK---RTVQALILTPTRELAQQVNQAIRDFSEDRRLHILTVCGGQSIERQIRMLY 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA +++ TPGR++D  +RG L + N+  +V+DEAD ML MGFI  ++ I    P  RQT
Sbjct: 120 KGAQIVVGTPGRVIDLLDRGDLKLENLSWVVLDEADEMLSMGFIDDVKKILQQTPEERQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM   +Q++   FL++P  ++V    +    IE   V    +   K   L  +L+
Sbjct: 180 TCFSATMPRPIQELVSKFLKSPVTVKVQQSKAAPARIEQ-RVYMVPRGCSKIRALHPILE 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D  +  IIF   +K    L + L+  G SV   HG++ Q  R ++L  F++  ++ +V
Sbjct: 239 LEDP-EASIIFVRTRKAAAELTNQLQAAGHSVDEYHGDLSQSQRERLLYRFRKNQVRWVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV NFD+P++ E+YIHRIGRTGRAG+ G A TL+   + + +  I
Sbjct: 298 ATDIAARGLDVDHLTHVINFDLPDQVESYIHRIGRTGRAGKTGTAITLIQPFERRKLYQI 357

Query: 361 EKLIEKKVD 369
           E+ + ++++
Sbjct: 358 ERKVRQRLE 366


>gi|165869135|ref|ZP_02213795.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167641387|ref|ZP_02399638.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170704569|ref|ZP_02895035.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|177649201|ref|ZP_02932203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190565289|ref|ZP_03018209.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|229603661|ref|YP_002866798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254685050|ref|ZP_05148910.1| ATP-dependent RNA helicase [Bacillus anthracis str. CNEVA-9066]
 gi|254722456|ref|ZP_05184244.1| ATP-dependent RNA helicase [Bacillus anthracis str. A1055]
 gi|254737496|ref|ZP_05195199.1| ATP-dependent RNA helicase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254743317|ref|ZP_05201002.1| ATP-dependent RNA helicase [Bacillus anthracis str. Kruger B]
 gi|254751811|ref|ZP_05203848.1| ATP-dependent RNA helicase [Bacillus anthracis str. Vollum]
 gi|254760330|ref|ZP_05212354.1| ATP-dependent RNA helicase [Bacillus anthracis str. Australia 94]
 gi|164715861|gb|EDR21378.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167510664|gb|EDR86059.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170130370|gb|EDS99231.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|172084275|gb|EDT69333.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190563316|gb|EDV17281.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|229268069|gb|ACQ49706.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
          Length = 447

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 140/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 3   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 63  KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 180 MLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356

Query: 361 EKLI 364
           EK +
Sbjct: 357 EKTL 360


>gi|189913047|ref|YP_001964936.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167777723|gb|ABZ96023.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
          Length = 529

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 138/352 (39%), Positives = 224/352 (63%), Gaps = 15/352 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF   GL P+++  + +AG+  P+PIQ + IPLVL+  D+   AQTGTGKTA++ LP L 
Sbjct: 11  DFQSFGLRPEILQGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQTGTGKTAAYGLPCLN 70

Query: 62  ILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                  R+++    + L+L PTRELA QV+D   K GK+  +    + GG  +  Q  +
Sbjct: 71  -------RIKVEDGMQVLVLTPTRELALQVSDELFKLGKHLGIKTTTIYGGSSYSKQITQ 123

Query: 119 LERGADVLICTPGRILDHFNRGKLLMN-NIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           + +GA V + TPGR+LD   +GK L N    ++++DEAD MLDMGF+  I++I +L+P  
Sbjct: 124 VAKGAQVAVATPGRLLDLL-KGKELKNFKPSMVILDEADEMLDMGFMDDIESIFNLLPTK 182

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM + ++K++  +  +P  +++     +++ IE  +     +  ++ A++ +
Sbjct: 183 RQTLLFSATMPEPIKKLASKYQTHPAHVKIAATEKSSKNIEQVYY-IIDEAEREIAVV-R 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L  ++  K  IIF   KK   +L  +L  +G+ V A+HG+++Q+ R ++L +  +G ++
Sbjct: 241 ILDYENPFK-AIIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVK 299

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++VA+D+AARGLD+ D+  V N+ +P  +E+Y HRIGRTGRAG+ GKA TLV
Sbjct: 300 ILVATDVAARGLDVKDLSLVINYHLPFDSESYTHRIGRTGRAGKSGKAVTLV 351


>gi|313683287|ref|YP_004061025.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313156147|gb|ADR34825.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 526

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 151/400 (37%), Positives = 222/400 (55%), Gaps = 18/400 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL  +++ ++  AG+  P+PIQ   IP++++  DV G A TGTGKTA+F LP L  
Sbjct: 16  FEAFGLRKEIMQSINFAGFKTPSPIQQMVIPVIMEGRDVVGQAHTGTGKTAAFGLPALNK 75

Query: 63  LE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  KG        TLI+ PTRELA QV+D   KYGK+  +    + GG  +  Q   +ER
Sbjct: 76  MHLKGGIE-----TLIITPTRELANQVSDEIFKYGKHLGVRTVTIYGGSSYNRQMDLIER 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V+I TPGR+LD  +R  L       +++DEAD MLDMGF+  I  I + +P  RQTL
Sbjct: 131 GAQVIIATPGRLLDMLSRNMLKGFTPSTVILDEADEMLDMGFLDDINEIFTYLPTERQTL 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +++++E  L NP    +    +T   I   +     + S++   + +L+ S
Sbjct: 191 LFSATMPAPIKQLAERILVNPFFASITKSETTNTDITQQYYVI--EESERDDAIIRLMDS 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D  K  ++FC  KK V  L + L   G+    +HG+++QR R  ++   K   + +++A
Sbjct: 249 EDAKKT-VVFCRTKKEVDRLSNVLSAAGYMAKGLHGDMEQRQRESVIKGLKTDAVDVLIA 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI- 360
           +D+AARGL I DV HVFN+ +P   E+Y+HRIGRTGRAG+ G A TLV   + K +  I 
Sbjct: 308 TDVAARGLHIDDVTHVFNYHIPFDPESYVHRIGRTGRAGKKGVAITLVTPLEFKELQRIR 367

Query: 361 --------EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
                      I  K+D     +S L   +EK  +    H
Sbjct: 368 AKVGTTMEHAYIPSKLDVKEAQVSRLVREIEKQHVYDEAH 407


>gi|149191663|ref|ZP_01869906.1| ATP-dependent RNA helicase DbpA [Vibrio shilonii AK1]
 gi|148834504|gb|EDL51498.1| ATP-dependent RNA helicase DbpA [Vibrio shilonii AK1]
          Length = 460

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 145/382 (37%), Positives = 226/382 (59%), Gaps = 7/382 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L  +++  +   GY   TPIQ + +P +L   DV G  +TG+GKTA+F L +L+ 
Sbjct: 6   FSTLNLPSELLGTLDSLGYASMTPIQAEALPKILAGKDVIGQGKTGSGKTAAFSLGVLSN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA       +  +N+ V  L GG+P   Q   LE 
Sbjct: 66  LRVKRFRVQ---SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH  +G++ ++ +  LV+DEADRMLDMGF   +  I    P  RQTL
Sbjct: 123 GAHILVGTPGRILDHLEKGRINLSELNTLVLDEADRMLDMGFKDALDAIIDQAPKERQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  +++Q ++   ++ P+ ++V +    + +I+  F  T     +  AL   LL  
Sbjct: 183 LFSATFPEQIQTIAARVMKQPEVVKVESKHDHS-SIKQFFYQTNTLEERDNALENLLLTH 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ ++FCN KK V N+   L  +GFSV  IHG+++QR R + L  F   ++ ++VA
Sbjct: 242 QP--ESAVVFCNTKKEVQNVADELHHRGFSVIDIHGDLEQRDRDQALVQFANKSVSILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFN+D+    E ++HRIGRTGRAG  G AF+  ++++   +  I+
Sbjct: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGNKGLAFSFYSEKEFYRVARID 359

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           + ++  ++       S N P +
Sbjct: 360 EYMDMPIEPSELPAKSSNQPFQ 381


>gi|160888638|ref|ZP_02069641.1| hypothetical protein BACUNI_01055 [Bacteroides uniformis ATCC 8492]
 gi|156861952|gb|EDO55383.1| hypothetical protein BACUNI_01055 [Bacteroides uniformis ATCC 8492]
          Length = 618

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 139/367 (37%), Positives = 227/367 (61%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+SP++  A+ + GY +P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++ 
Sbjct: 4   FEELGVSPEIRRAIEEMGYEQPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
             +K     R+P++LIL PTREL  Q+A +   Y K  + L V  + GG   E+Q + L+
Sbjct: 63  --QKINVNNRIPQSLILCPTRELCLQIAGDLNDYSKYTDGLRVLPVYGGSSIESQIRALK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  + +  I+ +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLATIQNVVMDEADEMLNMGFTDSINAILADVPQERNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+ ++S+ +L++ K I +   + +   ++H     +A+   K A L++++ 
Sbjct: 181 LLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVAFCVHAK--DKYAALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+V
Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357

Query: 361 EKLIEKK 367
           E++I KK
Sbjct: 358 ERIIGKK 364


>gi|30262474|ref|NP_844851.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47527766|ref|YP_019115.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185310|ref|YP_028562.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|167632590|ref|ZP_02390917.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170687052|ref|ZP_02878271.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|227814717|ref|YP_002814726.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|30257105|gb|AAP26337.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47502914|gb|AAT31590.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49179237|gb|AAT54613.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|167532888|gb|EDR95524.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170669103|gb|EDT19847.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|227002434|gb|ACP12177.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
          Length = 450

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 140/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 66  KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|322436878|ref|YP_004219090.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321164605|gb|ADW70310.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 532

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 141/377 (37%), Positives = 212/377 (56%), Gaps = 9/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  +S  +   +   G+  PTP+Q K IP  L+  D+   A TGTGKT SF++PM+  
Sbjct: 64  FADFNISASLKSRLAAGGFATPTPVQAKAIPPALEGRDILATASTGTGKTLSFLIPMIER 123

Query: 63  LEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +E       R +    R+LIL PTRELA QV + + K          L+ GG+    Q  
Sbjct: 124 MEANSEPSTRGKKGPIRSLILLPTRELAMQVLEAYAKINPQSKSDSVLVCGGLSENTQLD 183

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG  +++ TPGR+ D   R  + +N +E+LV+DE DRMLDMGF+P I+ I   +P T
Sbjct: 184 QLSRGPRLVVATPGRLEDFLRRRSVNLNFVEMLVLDEVDRMLDMGFLPAIRRIVGALPKT 243

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+ +SAT+   + ++  +++Q P RIE+ T S  ++ +E   V T  Q  +K  LL Q
Sbjct: 244 RQTMCYSATLDANITEIVRDYVQKPVRIEIGTTSKPSDQVE-LKVFTVMQ-DQKLGLLNQ 301

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L   +     ++F   K     +   LEK G     IHG+  Q  R   L  F  G  +
Sbjct: 302 MLNEHE--GTFLVFSRTKHGADRISKKLEKLGHVADVIHGDRSQSQRTSALKGFSTGRHR 359

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ D+ HV N+D+P   E+++HRIGRTGRAG+ G A T V  ++    
Sbjct: 360 ILVATDVAARGIDVRDIAHVVNYDLPGTTEDFVHRIGRTGRAGKKGVATTFVMPQERSDA 419

Query: 358 DAIEKLIEKKVDWLNGD 374
             +E+ ++ K +W   D
Sbjct: 420 RKMERELKIKFEWKEAD 436


>gi|229196679|ref|ZP_04323422.1| ATP-dependent RNA helicase [Bacillus cereus m1293]
 gi|228586754|gb|EEK44829.1| ATP-dependent RNA helicase [Bacillus cereus m1293]
          Length = 451

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 153/416 (36%), Positives = 238/416 (57%), Gaps = 28/416 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP   
Sbjct: 3   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLP--- 59

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
           ILEK        + LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 60  ILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLTTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T  TIE   + T    +K  AL  + + 
Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGIAITFVAAKDEKHLEEI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN-------PIPQKSTGFDRR 409
           EK              +L  P+++  I Q    R +        P P+KS  + +R
Sbjct: 357 EK--------------TLGAPIQREIIEQPKIKRVDENGKPVPRPAPKKSGEYRQR 398


>gi|147918815|ref|YP_687459.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
 gi|110622855|emb|CAJ38133.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
          Length = 451

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 143/371 (38%), Positives = 223/371 (60%), Gaps = 8/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  V+ A+   G+ + T IQ  TIPL L+  DV G A TGTGKTA+F +PM+ I
Sbjct: 4   FENLKLSEPVMKALASMGFEESTHIQDSTIPLALKGKDVIGQAPTGTGKTAAFGIPMIEI 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +   +     + +++ PTRELA QV++   K G+   +    + GG  ++ Q K L+  
Sbjct: 64  CDNSPS----IQAIVITPTRELAIQVSEELNKIGQFKGIRALPIYGGQEYKWQMKGLKEK 119

Query: 123 ADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++ TPGR++DH  + K +  N++++LV+DEAD MLDMGFI  I  +   +P  RQTL
Sbjct: 120 PQIIVATPGRLMDHLTKQKSIKGNDVKMLVLDEADEMLDMGFIDDIYAVMEKLPAERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM+ E++K++   ++ P  +   +    +  I   +V  +   S K   L ++L +
Sbjct: 180 LFSATMSPEIKKIAVELMKKPHIVGQESKKVKSPAISQHYVEVHE--SGKFEALCRILDT 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q      I+F   K  V  L   L ++G++   +HG++DQ+ R  I+  FK G  Q++VA
Sbjct: 238 Q-CPDLAIVFVRTKVRVDELQEGLTRRGYAAVGLHGDMDQQRRNSIMKQFKNGKTQVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI DV HVFNFD+P   E+Y+HRIGRTGRAG+ G + T V   +IK +  IE
Sbjct: 297 TDVAARGLDISDVSHVFNFDIPRDPESYVHRIGRTGRAGKSGISITFVTFREIKLLKLIE 356

Query: 362 KLIEKKVDWLN 372
           ++  ++++ + 
Sbjct: 357 QVSARRMERME 367


>gi|86143316|ref|ZP_01061718.1| hypothetical protein MED217_09040 [Leeuwenhoekiella blandensis
           MED217]
 gi|85830221|gb|EAQ48681.1| hypothetical protein MED217_09040 [Leeuwenhoekiella blandensis
           MED217]
          Length = 449

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 157/404 (38%), Positives = 230/404 (56%), Gaps = 7/404 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  ++ ++  A+ D G+  PTPIQ +   +V    DV GIAQTGTGKT +++LP+L  
Sbjct: 4   FEDFKINKQLRYAIEDLGFTTPTPIQEQAFGVVKSGRDVVGIAQTGTGKTFAYMLPVLEN 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   ++   PR LIL PTREL  QV +  E YGK  ++ V  + GG     Q + + +G
Sbjct: 64  LK--FSKQINPRVLILVPTRELVLQVVEQIEAYGKYSSIRVVGVYGGTNINTQKEAVIQG 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+ D      L + +++ L+IDE D MLD+GF   + NI  L+P  RQ ++
Sbjct: 122 CDILVGTPGRLYDLAVSRALQLKSVKQLIIDEVDVMLDLGFRFQLVNIFDLLPQRRQNIM 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATMTDE+ ++ + F   P+RI+V    +  + IE  +      Y+ K  LL  LL+ +
Sbjct: 182 FSATMTDEVDELMDTFFTTPERIQVALSGTPLDAIEQHYYEVPNFYT-KANLLNILLKDK 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQ-GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              K  +IF + KK    L   LE+  G  V  IH N  Q  R+  +  F  GT +++V 
Sbjct: 241 KEFKKTLIFVSNKKLADRLFKELEEVFGNEVGVIHANKTQNYRINAIEQFDAGTYRILVT 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+ +V HVFN DVP  AENY+HRIGRTGRAG  GK++ L   ++ +  +AIE
Sbjct: 301 TDVMARGLDLDEVTHVFNVDVPRFAENYMHRIGRTGRAGTTGKSYLLGTPDEQERKEAIE 360

Query: 362 KLIEKKVDWLNGDL-SSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           KL++ ++     DL   L      I   + N+   NNP  +  T
Sbjct: 361 KLMDMQLP--QADLPEGLEVSKRLIPEEEPNYVEINNPTKRDET 402


>gi|289571435|ref|ZP_06451662.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium
           tuberculosis T17]
 gi|289545189|gb|EFD48837.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium
           tuberculosis T17]
          Length = 489

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 148/381 (38%), Positives = 218/381 (57%), Gaps = 22/381 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+  ++V A+ + G  +P  IQ  T+PL L   DV G A+TG GKT +F +P+L  
Sbjct: 12  FAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQR 71

Query: 63  LEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGK--------------NYNLTVAL 105
           +  G   R     PR L++ PTREL  QV D+    GK                 L+V  
Sbjct: 72  ITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVS 131

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG P+E Q + L  GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P
Sbjct: 132 IYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLP 191

Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVA 223
            I+ I   +P  RQ++LFSATM D +  ++  F+  P  I    P S+A  +  E     
Sbjct: 192 DIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYR 251

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            +A    K  L+ ++LQ++D     +IF   K+    +   L ++GF+V A+HG++ Q +
Sbjct: 252 AHAL--DKVELVSRVLQARDRGAT-MIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLA 308

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R K L  F+ G I ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G
Sbjct: 309 REKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTG 368

Query: 344 KAFTLVAKEDIKHIDAIEKLI 364
            A TLV  +++     I++ +
Sbjct: 369 VAVTLVDWDELPRWSMIDQAL 389


>gi|167764052|ref|ZP_02436179.1| hypothetical protein BACSTE_02435 [Bacteroides stercoris ATCC
           43183]
 gi|167698168|gb|EDS14747.1| hypothetical protein BACSTE_02435 [Bacteroides stercoris ATCC
           43183]
          Length = 644

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 142/384 (36%), Positives = 232/384 (60%), Gaps = 10/384 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++ 
Sbjct: 4   FEELGVSPEIRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLIQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            +       R+P++LIL PTREL  Q+A +   Y K  + L V  + GG   E+Q + L+
Sbjct: 64  QIN---VNNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLRVLPVYGGSSIESQIRALK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  + ++ I+ +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILADVPQERNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+ ++S+ +L N K I +   +     ++H     +A+   K A L++++ 
Sbjct: 181 LLFSATMSPEIARISKKYLHNAKEITIGRRNEGTSNVKHVVFTVHAK--DKYAALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+V
Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E++I KK  ++ G++ +     EK
Sbjct: 358 ERIIGKK--FIQGEMPTGKQICEK 379


>gi|170725255|ref|YP_001759281.1| ATP-dependent RNA helicase SrmB [Shewanella woodyi ATCC 51908]
 gi|169810602|gb|ACA85186.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 408

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 219/368 (59%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L P ++ ++   G+ KPT IQ +TIPL + + D+   A TGTGKTASF+LP L
Sbjct: 1   MLFEDLLLDPILLESLKAMGHHKPTTIQQQTIPLAMDQRDILARAPTGTGKTASFLLPAL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I++  R      R +IL PTRELA+Q+           +L   ++ GG+P+  Q + L
Sbjct: 61  QHIIDFPRRFSGQARVVILTPTRELASQIHRYASHLAYELDLNTVIITGGVPYAPQEEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   D+L+ TPGR++++ ++G      +EILVIDEADRMLDMGF   ++ I       +Q
Sbjct: 121 KGNVDILVATPGRLMEYLDKGLFNAEEVEILVIDEADRMLDMGFSAVVETIAIESVGRKQ 180

Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           T+LFSAT+   ++ + S   L +P ++E   P S    I H ++        K  LL  +
Sbjct: 181 TMLFSATLEGSDVGRFSHQLLTDPVKVEAEAPRSEKAKI-HQWIHIADDKEHKFKLLCSI 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ ++T +  I+F   ++ V +L   L++ G     + G+++Q+ R + L  F +G + +
Sbjct: 240 LQQEETQR-AIVFVKTREAVASLEGMLQRVGIPCSYMRGDMEQKQRFQALGRFTKGEVNV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+ D+ HV NFD+P  A+ Y+HRIGRTGRAG  G A +LV   DI+ + 
Sbjct: 299 LLATDVAARGIDVEDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDIRVVG 358

Query: 359 AIEKLIEK 366
            IE+ +++
Sbjct: 359 KIERYMDQ 366


>gi|32267267|ref|NP_861299.1| ATP-dependent RNA helicase DeaD [Helicobacter hepaticus ATCC 51449]
 gi|32263320|gb|AAP78365.1| ATP-dependent RNA helicase DeaD [Helicobacter hepaticus ATCC 51449]
          Length = 530

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 138/366 (37%), Positives = 220/366 (60%), Gaps = 7/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL   V+  + +AG+  P+P+Q ++IP++LQ  D+   AQTGTGKTA+F +P+L  
Sbjct: 47  FDVFGLKDFVLKGIREAGFSTPSPVQSQSIPIILQGKDLIAQAQTGTGKTAAFAIPILNT 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L + +        LI+ PTRELA Q+++   K G+   +    + GG   + Q   LE+ 
Sbjct: 107 LNRNKD----IEALIITPTRELAMQISEEILKLGRFGRIKTICMYGGQSIKRQCDLLEKK 162

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
              +I TPGR+LDH   G++   + +I+V+DE+D MLDMGF+  I+ I   +P TRQTLL
Sbjct: 163 PKAMIATPGRLLDHLQNGRIAHFSPQIVVLDESDEMLDMGFLDDIEEIFKFLPNTRQTLL 222

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++ ++   L  P  +++     T + IE  +        ++   + +L+++Q
Sbjct: 223 FSATMPEPIKALAMKILNEPAFVKITPTDVTNQDIEQQYYII--NEGERDEAIVRLIETQ 280

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  K+ IIF   KK    L   L  +GF   A+HG+++QR R + +  F+E  I+++VA+
Sbjct: 281 NPTKS-IIFTRMKKEADALAIRLANRGFKAIALHGDMEQRDRREAIKAFRENKIEILVAT 339

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI DV HVFN+ +P   E+Y+HRIGRTGRAG+ G A TL    + K +  I++
Sbjct: 340 DVASRGLDISDVSHVFNYHIPLNPESYVHRIGRTGRAGKKGVAVTLATPLEYKDLSKIKQ 399

Query: 363 LIEKKV 368
           + + K+
Sbjct: 400 ITKAKL 405


>gi|119475471|ref|ZP_01615824.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
 gi|119451674|gb|EAW32907.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
          Length = 459

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 152/370 (41%), Positives = 222/370 (60%), Gaps = 8/370 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA L L P  +  +   GY K TPIQ +++PLVL   D+   A+TG+GKTA+F + +LT
Sbjct: 4   NFASLDLPPGQLANLQQLGYEKMTPIQQQSLPLVLAGSDIIAKAKTGSGKTAAFGIGLLT 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120
              K   R    +T+++ PTREL+ QVA    +  +   N+ V +L GG     Q   LE
Sbjct: 64  ---KINPRDFGTQTMVICPTRELSTQVATEIRRLARYQQNIKVVVLCGGQSIGPQIGSLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRI DH  +  L ++ + ILV+DEADRMLDMGF   I+ I   +P  RQT
Sbjct: 121 HGAHIVVGTPGRIKDHLRKKTLSLSRLGILVLDEADRMLDMGFYSDIETIIHEMPDDRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D+++ +S +F ++P  I V +     +  +  F+       ++ A LQ+LL 
Sbjct: 181 LLFSATYPDKIKTLSSSFQRSPVEISVESVRGNEKIHQQLFIC---DKRERLAGLQRLLM 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   +++ +IFCN  K V  +C  L   G S  AIHG+++QR R ++L  F   +  L+V
Sbjct: 238 NY-PIESAVIFCNTIKLVKEVCDYLVDIGISAKAIHGDLEQRDRDQVLIQFANHSCSLLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+  V NF++P  A+ YIHRIGRTGRAG+ G AF+L    +    DAI
Sbjct: 297 ATDVAARGLDIEDLPAVINFELPREADVYIHRIGRTGRAGKEGLAFSLFTDSEKYRFDAI 356

Query: 361 EKLIEKKVDW 370
             L E K+++
Sbjct: 357 STLQENKLNF 366


>gi|326794221|ref|YP_004312041.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326544985|gb|ADZ90205.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 453

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 147/399 (36%), Positives = 233/399 (58%), Gaps = 6/399 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  GL  +++ A+       PT IQ + IP +LQ HD+   AQTG+GKTA+F LP+L
Sbjct: 28  MTFSKFGLDQEILSALDTLELTAPTSIQEQAIPEILQGHDLIATAQTGSGKTAAFCLPIL 87

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L+ G +A+    R LI+ PTRELA Q+  N + + ++  L   ++ GG+    Q K L
Sbjct: 88  QALKDGEKAKPNHVRCLIIAPTRELAIQLNANIKAFNEHLTLRHQVIFGGVRVLPQRKYL 147

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG+D+L+ TPGR+LD   RG +L +++  LV+DEADR+LD+GF   +  I   +P  RQ
Sbjct: 148 KRGSDILVATPGRLLDLHQRGDILFDSLTHLVLDEADRLLDLGFAKELDQIIQALPKQRQ 207

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    ++K+++  L  PK +     ++    I            +K  LL +LL
Sbjct: 208 TLLFSATFAPPIKKLAKKILNQPKDVTTIQKAAAKPNINQWLHPV--DKKRKTELLLELL 265

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      I+F N KKN   +  +L + G S  A+H +  Q  R+ +   FK   I ++
Sbjct: 266 -NRKPHAQVIVFTNTKKNADLVAQALNQDGISAGALHSDRTQDERIHVFDQFKNNEISIL 324

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI ++  V N+D+P  +E+YIHRIGRTGRAG  G+AF++ + ++   +  
Sbjct: 325 VATDVAARGIDIQNLPLVINYDLPKVSEDYIHRIGRTGRAGHAGQAFSIASADEFDALLD 384

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKN 396
           IE L  KK+   +++G     + PL++   A+   ++K+
Sbjct: 385 IEALTGKKITRKYIDGFHPDHDIPLQRKAKAKPTKSKKD 423


>gi|270294991|ref|ZP_06201192.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274238|gb|EFA20099.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 650

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 139/367 (37%), Positives = 227/367 (61%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+SP++  A+ + GY +P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++ 
Sbjct: 4   FEELGVSPEIRRAIEEMGYEQPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
             +K     R+P++LIL PTREL  Q+A +   Y K  + L V  + GG   E+Q + L+
Sbjct: 63  --QKINVNNRIPQSLILCPTRELCLQIAGDLNDYSKYTDGLRVLPVYGGSSIESQIRALK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  + +  I+ +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLATIQNVVMDEADEMLNMGFTDSINAILADVPQERNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+ ++S+ +L++ K I +   + +   ++H     +A+   K A L++++ 
Sbjct: 181 LLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVAFCVHAK--DKYAALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+V
Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357

Query: 361 EKLIEKK 367
           E++I KK
Sbjct: 358 ERIIGKK 364


>gi|297738935|emb|CBI28180.3| unnamed protein product [Vitis vinifera]
          Length = 916

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 150/389 (38%), Positives = 218/389 (56%), Gaps = 21/389 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA++ L   +   +    YVKPTPIQ   IP+ +   D+   AQTG+GKTA+F  P++  
Sbjct: 423 FAEIHLGEGLNQNIRRCKYVKPTPIQRHAIPIAMAGRDLMACAQTGSGKTAAFCFPIICG 482

Query: 61  ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                L +G AR+  P  LIL PTREL+ Q+ +  +K+     L V +  GG P   Q +
Sbjct: 483 ILRNQLSRGGARLACPTALILSPTRELSCQIHEEAKKFSYKTGLKVVVAYGGAPISQQFR 542

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV--- 174
            LERG D+L+ TPGR++D   R ++ +  I+ L +DEADRMLDMGF P I+ I   +   
Sbjct: 543 NLERGVDILVATPGRLVDMIERARVSLRMIKYLALDEADRMLDMGFEPQIRKIVEQMDMP 602

Query: 175 -PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
            P  RQT+LFSAT  +E+Q+++ +FL N   + V    S+ + I       + + + K  
Sbjct: 603 PPGARQTMLFSATFPNEIQRLAADFLSNYIFLSVGRVGSSTDLIVQ--RVEFVEDTDKRY 660

Query: 234 LLQQLLQSQDTMKN------GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
            L  LLQSQ T +        ++F   K+ V  L   L   G +  AIHG+  Q  R + 
Sbjct: 661 HLMDLLQSQMTNRTPKKYALTLVFVETKRGVDALEQWLCMNGLAATAIHGDKVQMERERA 720

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L +FK G   +MVA+D+AARGLDIP V HV NFD+P   ++Y+HRIGRTGRAG+ G A  
Sbjct: 721 LKSFKSGATPIMVATDVAARGLDIPHVAHVINFDLPKAIDDYVHRIGRTGRAGKSGLATA 780

Query: 348 LVAKEDIKHIDAIEKLIEKK----VDWLN 372
                ++    ++ +L+++       WLN
Sbjct: 781 FFNDGNLSLAKSLVELMQESNQEVPSWLN 809


>gi|71891896|ref|YP_277626.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
 gi|71796002|gb|AAZ40753.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 569

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 224/369 (60%), Gaps = 10/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL+  +V  + D GY KP PIQI+ IP +L  +DV G+A TG+GKTA+FVLP+L  
Sbjct: 8   FIDLGLNRYIVNVLHDVGYTKPLPIQIQCIPYLLAGYDVLGMAHTGSGKTAAFVLPLLHN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQ---VADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           ++   +     + LI+ PTRELA Q   V  NF KY K  N  V  L GG  +  Q   L
Sbjct: 68  VDINNS---CSQGLIITPTRELAIQIGRVCSNFAKYMKKIN--VVTLYGGQSYGIQLSAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   +++ TPGR++DH NRG   ++ ++ LVIDEAD ML MGF+  ++ I   +P  RQ
Sbjct: 123 NKRPHIIVSTPGRLIDHLNRGTANLSQLKTLVIDEADEMLRMGFLEDVERIIKNIPVKRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT+   ++++S  F+ NPK + +++ +S    I   +   ++  +K  AL+ + L
Sbjct: 183 TALFSATLPMGIRRISYRFMNNPKEVFIHSNTSMCANIRQSYWLVHSGIAKHEALM-RFL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +++D     I+F   K   + +   LE+ G++  A++G+++Q  R + L   + G + ++
Sbjct: 242 ETED-FDAAIVFVRTKYATLEISEILERFGYNSAALNGDMNQTVRHQTLDRLRHGKLDIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  ++ YIHRIGRTGRAG  GK+   V  ++ + +  
Sbjct: 301 IATDVAARGLDVHRISLVINYDIPINSDAYIHRIGRTGRAGCMGKSLLFVEHKEYRLLRH 360

Query: 360 IEKLIEKKV 368
           IE+ I+ K+
Sbjct: 361 IERKIKLKI 369


>gi|15610347|ref|NP_217727.1| ATP-dependent RNA helicase RhlE [Mycobacterium tuberculosis H37Rv]
 gi|15842798|ref|NP_337835.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           CDC1551]
 gi|121639098|ref|YP_979322.1| putative ATP-dependent RNA helicase rhlE [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148663072|ref|YP_001284595.1| ATP-dependent RNA helicase RhlE [Mycobacterium tuberculosis H37Ra]
 gi|148824410|ref|YP_001289164.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis F11]
 gi|167968329|ref|ZP_02550606.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis H37Ra]
 gi|215405221|ref|ZP_03417402.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           02_1987]
 gi|215413087|ref|ZP_03421788.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           94_M4241A]
 gi|215432173|ref|ZP_03430092.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis EAS054]
 gi|215447511|ref|ZP_03434263.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T85]
 gi|224991590|ref|YP_002646279.1| putative ATP-dependent RNA helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253800250|ref|YP_003033251.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           1435]
 gi|254233823|ref|ZP_04927148.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis C]
 gi|254365837|ref|ZP_04981882.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254552311|ref|ZP_05142758.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260188256|ref|ZP_05765730.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis CPHL_A]
 gi|260202366|ref|ZP_05769857.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T46]
 gi|260206559|ref|ZP_05774050.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis K85]
 gi|289444785|ref|ZP_06434529.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T46]
 gi|289448897|ref|ZP_06438641.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis CPHL_A]
 gi|289555487|ref|ZP_06444697.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           605]
 gi|289575929|ref|ZP_06456156.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis K85]
 gi|289747027|ref|ZP_06506405.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           02_1987]
 gi|289755331|ref|ZP_06514709.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis EAS054]
 gi|289759347|ref|ZP_06518725.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T85]
 gi|294993850|ref|ZP_06799541.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis 210]
 gi|297635860|ref|ZP_06953640.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           4207]
 gi|297732857|ref|ZP_06961975.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           R506]
 gi|298526689|ref|ZP_07014098.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           94_M4241A]
 gi|306777536|ref|ZP_07415873.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu001]
 gi|306786080|ref|ZP_07424402.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu003]
 gi|306790447|ref|ZP_07428769.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu004]
 gi|306794968|ref|ZP_07433270.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu005]
 gi|306799169|ref|ZP_07437471.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu006]
 gi|306805014|ref|ZP_07441682.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu008]
 gi|306809200|ref|ZP_07445868.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu007]
 gi|306973655|ref|ZP_07486316.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu010]
 gi|313660190|ref|ZP_07817070.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           V2475]
 gi|2072674|emb|CAB08305.1| PROBABLE ATP-DEPENDENT RNA HELICASE RHLE [Mycobacterium
           tuberculosis H37Rv]
 gi|13883125|gb|AAK47649.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           CDC1551]
 gi|121494746|emb|CAL73227.1| Probable ATP-dependent RNA helicase rhlE [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124599352|gb|EAY58456.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis C]
 gi|134151350|gb|EBA43395.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148507224|gb|ABQ75033.1| ATP-dependent RNA helicase RhlE [Mycobacterium tuberculosis H37Ra]
 gi|148722937|gb|ABR07562.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis F11]
 gi|224774705|dbj|BAH27511.1| putative ATP-dependent RNA helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253321753|gb|ACT26356.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           1435]
 gi|289417704|gb|EFD14944.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T46]
 gi|289421855|gb|EFD19056.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis CPHL_A]
 gi|289440119|gb|EFD22612.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           605]
 gi|289540360|gb|EFD44938.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis K85]
 gi|289687555|gb|EFD55043.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           02_1987]
 gi|289695918|gb|EFD63347.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis EAS054]
 gi|289714911|gb|EFD78923.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T85]
 gi|298496483|gb|EFI31777.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214084|gb|EFO73483.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu001]
 gi|308329234|gb|EFP18085.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu003]
 gi|308333066|gb|EFP21917.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu004]
 gi|308336752|gb|EFP25603.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu005]
 gi|308340590|gb|EFP29441.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu006]
 gi|308344527|gb|EFP33378.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu007]
 gi|308348323|gb|EFP37174.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu008]
 gi|308356899|gb|EFP45750.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu010]
 gi|323718078|gb|EGB27260.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           CDC1551A]
 gi|326902560|gb|EGE49493.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis W-148]
 gi|328459985|gb|AEB05408.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           4207]
          Length = 527

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 148/381 (38%), Positives = 218/381 (57%), Gaps = 22/381 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+  ++V A+ + G  +P  IQ  T+PL L   DV G A+TG GKT +F +P+L  
Sbjct: 12  FAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQR 71

Query: 63  LEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGK--------------NYNLTVAL 105
           +  G   R     PR L++ PTREL  QV D+    GK                 L+V  
Sbjct: 72  ITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVS 131

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG P+E Q + L  GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P
Sbjct: 132 IYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLP 191

Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVA 223
            I+ I   +P  RQ++LFSATM D +  ++  F+  P  I    P S+A  +  E     
Sbjct: 192 DIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYR 251

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            +A    K  L+ ++LQ++D     +IF   K+    +   L ++GF+V A+HG++ Q +
Sbjct: 252 AHAL--DKVELVSRVLQARDRGAT-MIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLA 308

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R K L  F+ G I ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G
Sbjct: 309 REKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTG 368

Query: 344 KAFTLVAKEDIKHIDAIEKLI 364
            A TLV  +++     I++ +
Sbjct: 369 VAVTLVDWDELPRWSMIDQAL 389


>gi|228918066|ref|ZP_04081594.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841546|gb|EEM86662.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 481

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 132/362 (36%), Positives = 220/362 (60%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  LS +V  A+   GY +PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSNYALSKEVRRALTGLGYERPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  ++  P  IE+     T + IEH       +  +K +LL+ +   +
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R  ++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE 
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEV 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|189913376|ref|YP_001964605.1| ATP-dependent RNA helicase, DEAD-box family (DeaD) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
 gi|167781444|gb|ABZ99741.1| ATP-dependent RNA helicase, DEAD-box family (DeaD) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 534

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 138/352 (39%), Positives = 224/352 (63%), Gaps = 15/352 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF   GL P+++  + +AG+  P+PIQ + IPLVL+  D+   AQTGTGKTA++ LP L 
Sbjct: 16  DFQSFGLRPEILQGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQTGTGKTAAYGLPCLN 75

Query: 62  ILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                  R+++    + L+L PTRELA QV+D   K GK+  +    + GG  +  Q  +
Sbjct: 76  -------RIKVEDGMQVLVLTPTRELALQVSDELFKLGKHLGIKTTTIYGGSSYSKQITQ 128

Query: 119 LERGADVLICTPGRILDHFNRGKLLMN-NIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           + +GA V + TPGR+LD   +GK L N    ++++DEAD MLDMGF+  I++I +L+P  
Sbjct: 129 VAKGAQVAVATPGRLLDLL-KGKELKNFKPSMVILDEADEMLDMGFMDDIESIFNLLPTK 187

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM + ++K++  +  +P  +++     +++ IE  +     +  ++ A++ +
Sbjct: 188 RQTLLFSATMPEPIKKLASKYQTHPAHVKIAATEKSSKNIEQVYY-IIDEAEREIAVV-R 245

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L  ++  K  IIF   KK   +L  +L  +G+ V A+HG+++Q+ R ++L +  +G ++
Sbjct: 246 ILDYENPFK-AIIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVK 304

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++VA+D+AARGLD+ D+  V N+ +P  +E+Y HRIGRTGRAG+ GKA TLV
Sbjct: 305 ILVATDVAARGLDVKDLSLVINYHLPFDSESYTHRIGRTGRAGKSGKAVTLV 356


>gi|7446043|pir||T15942 hypothetical protein F01F1.7 - Caenorhabditis elegans
          Length = 701

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 145/383 (37%), Positives = 211/383 (55%), Gaps = 34/383 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + G   +V  AV + GY++PTPIQ + IP+ LQ  DV G+A+TG+GKTA+F+LP+L 
Sbjct: 302 NWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLV 361

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +E+   R   P  +I+ PTRELA Q+ +   K+GK   +    +IGG   E Q
Sbjct: 362 WITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQ 421

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL  G +V+I TPGR+LD      LL+N    +++DEADRMLDMGF P +Q +   +P
Sbjct: 422 GMKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMP 481

Query: 176 FT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
            T                         RQT++F+ATM+  +++++  +L+ P  + + + 
Sbjct: 482 DTNMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSA 541

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               E +E   V       +K   L ++L+SQ      IIF NQKK    L   L K GF
Sbjct: 542 GKPTERVEQ--VVYMVPEDRKRKKLVEVLESQ-FQPPIIIFVNQKKGADMLSKGLTKLGF 598

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
               +HG   Q  R   L   KEGT  ++VA+D+A RG+D+ DV  V N+D+    E+Y 
Sbjct: 599 KPTVLHGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYT 658

Query: 331 HRIGRTGRAGRHGKAFTLVAKED 353
           HRIGRTGRAG+HGKA T +  +D
Sbjct: 659 HRIGRTGRAGKHGKAITFLTPDD 681


>gi|309774568|ref|ZP_07669594.1| ATP-dependent RNA helicase, DEAD/DEAH family [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308917683|gb|EFP63397.1| ATP-dependent RNA helicase, DEAD/DEAH family [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 585

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 140/351 (39%), Positives = 214/351 (60%), Gaps = 9/351 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L +S +V+ AV + GY   T IQ ++IPL+++  DV G + TGTGKTA+F +P +  
Sbjct: 4   FNELQISSEVMKAVEEMGYENATDIQAQSIPLIMEGKDVLGRSNTGTGKTAAFGIPAIEK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           + +G    R P  LI+ PTREL  QVA    K+ K    + +  + GG P + Q + L+R
Sbjct: 64  VCQG---TRNPNALIICPTRELVTQVATELRKFSKYKEGVKIVPIYGGQPIDRQIQLLKR 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TRQ 179
           G  +++ TPGRI+DH NR  L +++  ++++DEAD ML+MGF   I+ I S++P     Q
Sbjct: 121 GCGIVVGTPGRIMDHLNRRTLKLDDTNMVILDEADEMLNMGFKEDIEEILSMMPEGNEHQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT   E+ ++++ F  +P R+E+ +   T +T+E  +    A   KK   L+ LL
Sbjct: 181 TVLFSATWPAEILRITKQFQNDPVRVEIKSSQRTIDTVEQIYYE--APRGKKANALRVLL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     +IFCN KK V  LC  L K      ++HG++ Q  R +++  F+ G   ++
Sbjct: 239 SHYDP-DLCMIFCNTKKMVDELCDELNKHDIKAISLHGDMKQEFRSRVMEQFRSGNYPIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           +A+D+AARG+D+ D+  V NFD+P   E YIHR+GRTGRAG+ G A TLV+
Sbjct: 298 IATDVAARGIDVDDIDLVVNFDIPQDNEYYIHRVGRTGRAGKKGLAITLVS 348


>gi|228936735|ref|ZP_04099526.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228822944|gb|EEM68785.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 481

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 133/362 (36%), Positives = 220/362 (60%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS ++V A+   GY  PT +Q + IP+ L++ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FTNYALSKEIVRALTGLGYENPTEVQGEVIPVALKKRDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++K+S  ++  P  IE+     T + IEH    T  +  +K +LL+ +   +
Sbjct: 183 FSATLPEDVEKLSRTYMDLPTYIEIKAAGITTDKIEHTLFETREE--EKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L +  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVFRQLNRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE 
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNKGKAITFITPYEDRFLEEIES 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|163789736|ref|ZP_02184173.1| hypothetical protein CAT7_05876 [Carnobacterium sp. AT7]
 gi|159874958|gb|EDP69025.1| hypothetical protein CAT7_05876 [Carnobacterium sp. AT7]
          Length = 423

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 151/369 (40%), Positives = 222/369 (60%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  ++ A+ +AGY K TPIQ   IP +L   D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MLFNELELNQHLLHALKEAGYTKATPIQEDAIPHLLNNKDLLGCAQTGTGKTAAFALPIL 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I+E+        + LIL PTRELA Q+ ++F+ Y K   L + ++ GG+    Q   L
Sbjct: 61  QNIMEEKTVGKGAIKALILAPTRELAIQIGESFQTYAKYLPLNIQVIFGGVSQNPQTATL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG D+LI TPGR+LD   +G + +N +E  V+DEAD MLDMG +  +++I   +P  RQ
Sbjct: 121 KRGTDILIATPGRLLDLIRQGFVKLNQVEFFVLDEADMMLDMGMLRDVRHIIRELPKKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           ++ FSATM  E++K++   L NP ++ VN  SST E I           + K  LL  LL
Sbjct: 181 SMFFSATMPTEIEKLAGTILSNPVKVVVNPVSSTVEVILQSVY--RVAKTDKTNLLIHLL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +++  ++  ++F   K     +   L + GF+  AIHGN  Q +R + L NFK     ++
Sbjct: 239 KNKQ-VERSLVFSRTKHGANKIVKKLLQAGFTAEAIHGNKSQNARQQALENFKTMKTSVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P++  V  FD+P   E Y+HRIGRTGRAG  GKA +   + +   +  
Sbjct: 298 VATDIAARGIDVPELSQVIQFDLPEVPETYVHRIGRTGRAGLSGKAISFCDETESDLLRD 357

Query: 360 IEKLIEKKV 368
           IEKL ++KV
Sbjct: 358 IEKLSKRKV 366


>gi|291302062|ref|YP_003513340.1| DEAD/DEAH box helicase domain-containing protein [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571282|gb|ADD44247.1| DEAD/DEAH box helicase domain protein [Stackebrandtia nassauensis
           DSM 44728]
          Length = 557

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 144/389 (37%), Positives = 218/389 (56%), Gaps = 12/389 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DLG+  + V A+ + G  +   IQ   IP+ ++ +D+ G A TGTGKT  F +P+L T
Sbjct: 30  FTDLGVRAETVAALSEIGITQAFAIQEYAIPIAMRGNDIIGRAPTGTGKTLGFGVPLLET 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +          P+ L++ PTREL  QV+ + E  GK   + V  + GG  +E Q + L  
Sbjct: 90  VTSAAEGADGRPQALVVVPTRELGLQVSRDIEAAGKTRGIRVLPIYGGRAYEPQLEALRT 149

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G ++++ TPGR+LD      L +  +   V+DEADRMLD+GF   ++ + + +P  RQT+
Sbjct: 150 GVEIVVGTPGRLLDLLKAKHLKLGAVHTAVLDEADRMLDLGFAEDVEKLLAALPEQRQTM 209

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +  +S  FL+ P  I     +  A + +   +A       K  +L ++LQ+
Sbjct: 210 LFSATMPDAIVSLSRKFLKQPMTIHAEVATDNAPSAQTKQLAYLTHSLNKIEVLARILQA 269

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I+F   K++   +   LE +GF+V A+HG++ Q +R + L  F+ G I ++VA
Sbjct: 270 KDRGLT-IVFSRTKRHTQRVADDLEFRGFAVAAVHGDLGQNARERALRAFRSGKIDVLVA 328

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ DV HV N+D P  AE Y+HRIGRTGRAG  G A T V+ ED        
Sbjct: 329 TDVAARGLDVRDVTHVINYDSPEDAETYVHRIGRTGRAGATGVAVTFVSWEDAPRW---- 384

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           K+I K +D        L+ P+E    + H
Sbjct: 385 KIIAKTLDL------ELSDPVETYHTSDH 407


>gi|320322648|gb|EFW78741.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 442

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 143/371 (38%), Positives = 218/371 (58%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA +GL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASIGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               +E  +      R L+L PTRELA QV ++  +Y ++  L+     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A +++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVQQWVVTV--DKKRKADLFIHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++        ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVD 369
           AIE L  + ++
Sbjct: 358 AIEVLTRQTLE 368


>gi|313213311|emb|CBY37141.1| unnamed protein product [Oikopleura dioica]
          Length = 499

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 142/368 (38%), Positives = 218/368 (59%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F + G+   ++  V  AGYV PT IQ ++ P+ L   D+ GIA+TG+GKT +FVLP +
Sbjct: 55  LQFMEAGIPDYLMGTVTAAGYVTPTTIQSQSWPIALSGADMQGIARTGSGKTLAFVLPSI 114

Query: 60  LTILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + I+ +   R    P  +IL PTRELA QV +  E++GK   +    + GG    AQ   
Sbjct: 115 IHIMAQPDLRPGDGPVAVILAPTRELAKQVQEVAEQFGKPCGVNTVAVYGGADKRAQIGA 174

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERGA +++  PGR+LD    G+  ++    L++DEADRMLDMGF P I+ I   +   R
Sbjct: 175 LERGAHIVVACPGRLLDLIQSGRTNLHRTTFLILDEADRMLDMGFEPQIRKIVGQIRQDR 234

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT   E+QK++ +F++ P +I +     TA       V   + + K  A+    
Sbjct: 235 QTLMFSATWPKEIQKLASDFMKTPTQIFIGNQELTANPNIEQVVEVVSDFDK--AMRFNY 292

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q T    ++F + K++  NL +++        AIHG+ DQR R ++L +F+ G I +
Sbjct: 293 WFQQITSTKILVFTDTKRDCDNLAYTMSNGRVRCAAIHGDKDQRERERVLKDFRNGQISV 352

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+G V N+D P++ E+Y+HRIGRT R  + GK+ + +  +  KH  
Sbjct: 353 LVATDVAARGLDIDDIGTVINYDFPSQLEDYVHRIGRTARGEKKGKSISFITAKSAKHAS 412

Query: 359 AIEKLIEK 366
           A+ KL+E+
Sbjct: 413 ALVKLLEQ 420


>gi|256785357|ref|ZP_05523788.1| helicase [Streptomyces lividans TK24]
          Length = 513

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 142/374 (37%), Positives = 219/374 (58%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F  LG+ P+   A+   G + P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L  
Sbjct: 38  FRSLGILPETAEALEAVGIITPFPIQEMTLPVALSGKDVIGQAKTGTGKTLGFGLPLLER 97

Query: 61  -TI---LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            T+   +E GRA        P+ L++ PTREL  QV ++    GK  N+ V  + GG  +
Sbjct: 98  VTVPADVEAGRAAPESLTDAPQALVVVPTRELCQQVTNDLLTAGKVRNVRVLAIYGGRAY 157

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E Q + L++G DV++ TPGR+LD   + KL + +I+ LV+DEAD MLD+GF+P ++ I +
Sbjct: 158 EPQVEALKQGVDVIVGTPGRLLDLAGQKKLSLKHIKSLVLDEADEMLDLGFLPDVEKIIN 217

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKK 231
           ++P  RQT+LFSATM   +  ++  ++  P  I   +P     T+ +     Y A    K
Sbjct: 218 MLPARRQTMLFSATMPGAVIGLARRYMSQPTHISATSPDDEGATVANTKQFIYRAHNMDK 277

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             ++ ++LQ+ D     ++FC  K+   +L   L+++GF+  A+HG++ Q +R + L  F
Sbjct: 278 PEMVARILQA-DGRGLAMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAF 336

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAG  G A TLV  
Sbjct: 337 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLVDW 396

Query: 352 EDIKHIDAIEKLIE 365
           +DI     I K ++
Sbjct: 397 DDIPRWQLINKALD 410


>gi|226943260|ref|YP_002798333.1| ATP-dependent RNA helicase RhlB [Azotobacter vinelandii DJ]
 gi|226718187|gb|ACO77358.1| ATP-dependent RNA helicase RhlB [Azotobacter vinelandii DJ]
          Length = 521

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 139/374 (37%), Positives = 227/374 (60%), Gaps = 10/374 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  L P+++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ +++ 
Sbjct: 135 FHDFDLDPRLMHAIHDVGFPYCTPIQAQVLGYTLKGRDAIGRAQTGTGKTAAFLISIISQ 194

Query: 62  ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L+    + R    PR LI+ PTREL  Q+A +     +   L V   +GG+ F+ Q K+
Sbjct: 195 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDALALTRYTGLNVMSFVGGMDFDKQLKQ 254

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           LE +  D+L+ TPGR+LD   RG++ ++ +E+LV+DEADRMLDMGFIP ++ I    P+ 
Sbjct: 255 LEEKFCDILVATPGRLLDFNQRGEVHLDMVEVLVLDEADRMLDMGFIPQVRQIIRQTPYK 314

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T+++  +++ +  +P  +E+      ++++E    A     S K  LL
Sbjct: 315 GERQTLLFSATFTEDVMNLAKQWTVDPAIVEIEPEHVASDSVEQHVYAVAG--SDKYRLL 372

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ +++  +  ++F N+K  V  +   L K G S   + G++ Q  R+K+L  F+EG 
Sbjct: 373 YNLV-TRNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIKVLEGFREGR 431

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ +  V HV N+ +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 432 IRVLVATDVAGRGIHVEGVSHVINYTLPEDPDDYVHRIGRTGRAGSKGTSISFAGEDDAF 491

Query: 356 HIDAIEKLIEKKVD 369
            +  IE L+ +K+D
Sbjct: 492 ALPPIEALLGRKID 505


>gi|37676305|ref|NP_936701.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus YJ016]
 gi|37200846|dbj|BAC96671.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 459

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 144/363 (39%), Positives = 223/363 (61%), Gaps = 7/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P+++  +   GY + TPIQ +++PLVL   DV G  +TG+GKTA+F L +L+ 
Sbjct: 5   FNTLSLKPELLSTLDSLGYTEMTPIQAQSLPLVLDGKDVIGQGKTGSGKTATFALGLLSN 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA       +  +N+ V  L GG+P   Q   LE 
Sbjct: 65  LNVSRFRVQ---SLVLCPTRELADQVATEIRTLARGIHNIKVLTLCGGMPMGPQILSLEH 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH ++G++ +  +  LV+DEADRML+MGF   I  I    P  RQTL
Sbjct: 122 GAHILVGTPGRILDHLSKGRIDLAELNTLVLDEADRMLEMGFQDAIDAIIDAAPTQRQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  ++++ ++   +QNP+ ++V + +    TIE  F    +   +  AL   LL  
Sbjct: 182 LFSATFPEQIETIASKVMQNPEMVKVES-THQKSTIEQRFYQLESTEERDNALEALLLTH 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   ++ ++FCN KK V N+   L  + FSV  +HG+++QR R + L+ F   +I ++VA
Sbjct: 241 RP--ESTVVFCNTKKEVQNVTDELNHRRFSVIELHGDMEQRERERALTMFANKSISILVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  V NF++    E ++HRIGRTGRAG  G A +  +++++  ++ IE
Sbjct: 299 TDVAARGLDVDNLDAVINFELSRDPEVHVHRIGRTGRAGAKGIAISFFSEKELYRVERIE 358

Query: 362 KLI 364
           + +
Sbjct: 359 EYM 361


>gi|89096784|ref|ZP_01169676.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. NRRL B-14911]
 gi|89088799|gb|EAR67908.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. NRRL B-14911]
          Length = 480

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 136/362 (37%), Positives = 220/362 (60%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  LS ++  A+    Y  PT +Q K IPL +++ D+   AQTG+GKTASF +P+  +
Sbjct: 5   FADYHLSEEIQRALGVLKYESPTEVQSKVIPLAMEKQDLVVKAQTGSGKTASFGIPVCDM 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E      + P+ LIL PTRELA QV ++    G+   +    + G  PF  Q ++L++ 
Sbjct: 65  VE---WEEKSPQALILTPTRELAVQVREDITNIGRFKRIKAVAVYGKEPFTKQKEELKQK 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR++DH +R  L+++ I+ L+IDEAD ML+ GFI  ++ I   +P  R T++
Sbjct: 122 THVVVGTPGRVMDHIDRETLVLDRIQYLIIDEADEMLNRGFIDEVEAIIKELPSDRVTMV 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +++ +   ++++P  +E+ +   TAETIEH  +    +   K +LL+ +  ++
Sbjct: 182 FSATLPKDVEALCHEYMKDPVHVEIESTGVTAETIEHLLMEV--KQEDKISLLKDITVTE 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + +IFC  K++V  +   L+  G+S   +HG ++Q  R  ++  FK G  + +VA+
Sbjct: 240 NP-DSCLIFCRTKEHVDTVYTELDGAGYSSERLHGGLEQEDRFAVMEGFKMGNYRYLVAT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI +V  V N+DVP   E+Y+HR GRTGRAG  GKA T     + K + AIE+
Sbjct: 299 DVAARGIDIDNVSLVINYDVPMEKESYVHRTGRTGRAGNKGKAITFATPFEEKFLKAIER 358

Query: 363 LI 364
            I
Sbjct: 359 YI 360


>gi|150391088|ref|YP_001321137.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149950950|gb|ABR49478.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 549

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 145/397 (36%), Positives = 229/397 (57%), Gaps = 10/397 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+S ++   +  +   +PTP+Q++ IP +L + DV   AQTGTGKT +F+LP+L  
Sbjct: 5   FAKLGISEEIENVLNKSDITEPTPVQLQAIPPLLAQRDVMAQAQTGTGKTLAFILPILE- 63

Query: 63  LEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               R  V  P  + LI+ PTRELA Q+    +K  +   + +    GG   E Q +KL+
Sbjct: 64  ----RVNVEKPTIQALIITPTRELAIQITAETKKLAEVKGINILAAYGGQDVEQQLRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH  R  + +  + +LV+DEAD+ML MGF+  +++I + +P  RQ 
Sbjct: 120 GSIHIIIGTPGRLLDHLRRKTINLGKLSMLVLDEADQMLHMGFLRDVEDIMTHIPKRRQN 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + FSATM ++++ ++E ++++P +I+V +   T + I    + T  +   K  LL QL  
Sbjct: 180 MFFSATMPNQVRTLAEQYMKDPVQIQVQSKRVTLDEIRQVVIETTDRG--KQDLLCQLFD 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIFC  K+  + L  +L   G++   +HG++ Q  R K++  FK+  IQ +V
Sbjct: 238 EYNPFM-AIIFCRTKRRAIALNEALINLGYNSDELHGDLTQAKREKVMKAFKKSKIQYLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V H+FN+D+P   E+YIHRIGRTGRAG  G A T +   D   +  I
Sbjct: 297 ATDVAARGLDIEGVTHIFNYDIPQDGESYIHRIGRTGRAGETGMAITFMTSRDRDELKII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           EK+I+  +D        ++   E+ D  +    R N+
Sbjct: 357 EKVIKMDLDVQKSKSGKIDLDEEEQDTKKSPKGRGND 393


>gi|288800406|ref|ZP_06405864.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332619|gb|EFC71099.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 641

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 226/368 (61%), Gaps = 12/368 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F  LG+S ++  A+ + G+  PTP+Q + IP +L + +DV  +AQTGTGKTA++ LP++ 
Sbjct: 4   FEMLGISEEIRQAIEELGFEHPTPVQEEVIPYLLGEGNDVIALAQTGTGKTAAYGLPLI- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +K   + +  + LIL PTREL  Q++D   +F KY K   LTV  + GG   E Q K 
Sbjct: 63  --QKVNPQQKHTQALILSPTRELCLQISDSLSDFSKYIKG--LTVVPVYGGTSIETQIKA 118

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G  +++ TPGR++D  +RG   + N+  +V+DEAD ML+MGF   I  I   VP  R
Sbjct: 119 LKKGTQIIVATPGRLIDLIHRGVAKLENVTNVVLDEADEMLNMGFSESINEILECVPKDR 178

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            TLLFSATM+ E+++++ N+L N K I V + +  AE++ H +    A+   K   L+++
Sbjct: 179 NTLLFSATMSKEIERIARNYLTNHKEIVVGSRNEGAESVNHIYYMVNAK--DKYLALKRI 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +    ++   IIFC  K+    +   L   G++  A+HG++ Q+ R   +  F++ T Q 
Sbjct: 237 VDYYPSI-FAIIFCRTKRETQEIADKLIHDGYNAEALHGDLSQQQRDLTMQKFRKHTTQF 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ D+ HV NF +P+  E+Y HR GRTGRAG+ G + +++   +   + 
Sbjct: 296 LVATDVAARGLDVDDLTHVINFGLPDDIESYTHRSGRTGRAGKKGTSISIMHTRERSKMH 355

Query: 359 AIEKLIEK 366
           AIEK+I K
Sbjct: 356 AIEKVISK 363


>gi|289769255|ref|ZP_06528633.1| helicase [Streptomyces lividans TK24]
 gi|289699454|gb|EFD66883.1| helicase [Streptomyces lividans TK24]
          Length = 556

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 142/374 (37%), Positives = 219/374 (58%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F  LG+ P+   A+   G + P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L  
Sbjct: 81  FRSLGILPETAEALEAVGIITPFPIQEMTLPVALSGKDVIGQAKTGTGKTLGFGLPLLER 140

Query: 61  -TI---LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            T+   +E GRA        P+ L++ PTREL  QV ++    GK  N+ V  + GG  +
Sbjct: 141 VTVPADVEAGRAAPESLTDAPQALVVVPTRELCQQVTNDLLTAGKVRNVRVLAIYGGRAY 200

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E Q + L++G DV++ TPGR+LD   + KL + +I+ LV+DEAD MLD+GF+P ++ I +
Sbjct: 201 EPQVEALKQGVDVIVGTPGRLLDLAGQKKLSLKHIKSLVLDEADEMLDLGFLPDVEKIIN 260

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKK 231
           ++P  RQT+LFSATM   +  ++  ++  P  I   +P     T+ +     Y A    K
Sbjct: 261 MLPARRQTMLFSATMPGAVIGLARRYMSQPTHISATSPDDEGATVANTKQFIYRAHNMDK 320

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             ++ ++LQ+ D     ++FC  K+   +L   L+++GF+  A+HG++ Q +R + L  F
Sbjct: 321 PEMVARILQA-DGRGLAMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAF 379

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAG  G A TLV  
Sbjct: 380 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLVDW 439

Query: 352 EDIKHIDAIEKLIE 365
           +DI     I K ++
Sbjct: 440 DDIPRWQLINKALD 453


>gi|113477200|ref|YP_723261.1| DEAD/DEAH box helicase-like [Trichodesmium erythraeum IMS101]
 gi|110168248|gb|ABG52788.1| DEAD/DEAH box helicase-like [Trichodesmium erythraeum IMS101]
          Length = 495

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 142/376 (37%), Positives = 226/376 (60%), Gaps = 12/376 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LG+S +    +   G+ +PTPIQ + IP +L+  D+ G AQTGTGKTA+F LP  
Sbjct: 3   LSFASLGISEERANHLETIGFTEPTPIQAQAIPPLLEGKDIVGQAQTGTGKTAAFSLP-- 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYN------LTVALLIGGIPFE 113
            ILE+        + LIL PTRELA QV +   ++ G N        L V  + GG   E
Sbjct: 61  -ILEQIDIDTNAVQALILTPTRELALQVTEAIRQFTGINSKGPTKRRLFVLTVYGGQSIE 119

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q+++L++G  +++ TPGRI+D  NR  L +++++++V+DEAD ML MGFI  ++ I   
Sbjct: 120 RQSQRLQKGVHIVVGTPGRIIDMLNRNSLKLDHLKMMVLDEADEMLSMGFIQDVEKILEA 179

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
            P  RQT  FSATM   ++K+   +LQ+P  ++V    +T + I          +SK  A
Sbjct: 180 APAERQTAFFSATMDYSIRKLVNKYLQSPVTVKVAQQKTTPKRITQTVYILPRGWSKGKA 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L Q +L+ +D  +  +IF   ++    L + L+  G SV   HGN++Q  R ++L+ F+ 
Sbjct: 240 L-QPILELEDP-EAALIFVRTRQAAAELTNQLQSAGHSVDEYHGNLNQSQRERLLTRFRN 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             ++ +VA+D+AARGLD+  + HV N+D+P+  ++Y+HRIGRTGRAGR G A +L+   D
Sbjct: 298 QQVRWVVATDIAARGLDVDHLTHVINYDLPDSVDSYVHRIGRTGRAGREGTAISLIHPVD 357

Query: 354 IKHIDAIEKLIEKKVD 369
            + +  IE+ + ++++
Sbjct: 358 KRKLRLIERHLRQRLN 373


>gi|85712866|ref|ZP_01043908.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
 gi|85693330|gb|EAQ31286.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
          Length = 587

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 141/374 (37%), Positives = 224/374 (59%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           + F D+ L P VV   L+A G+ +PTPIQ + IP +L+ +DV G AQTGTGKTA+F LP 
Sbjct: 8   VSFQDMAL-PSVVLNQLEALGFTQPTPIQQQAIPSLLEGNDVLGEAQTGTGKTAAFSLPA 66

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
           L  +E  + + +M   L++ PTRELA QVAD  E + K    + VA + GG  F  Q + 
Sbjct: 67  LASIEANQRQTQM---LVVTPTRELAIQVADAIESFSKQMKGMEVATVYGGSAFGPQIQA 123

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RGA V++ TPGR++D  N+  L ++ +   V+DEAD ML+MGFI  I+ I   VP T 
Sbjct: 124 LKRGASVVVGTPGRLIDLLNKKVLKLDGLRFAVLDEADEMLNMGFIEDIETILQSVPDTA 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q  LFSATM   ++K+++ +L +P  I +         I     A       K   L +L
Sbjct: 184 QRALFSATMPTAIRKLAKTYLTDPVNIRIAPVEQAKANIRQR--AWKVMGMTKMTALTRL 241

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+  +  +  ++F   +++ +++   L++QGF    + G+++Q  R + ++  + G I++
Sbjct: 242 LEVTE-YQRALVFVRTRQDTMDVAELLQRQGFRAAPLSGDLNQAQREQTVTQLRSGHIKV 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+ ARGLD+P++ HV N+D+P+  E+Y+HRIGRTGRAGR G+A      ++   + 
Sbjct: 301 LVATDVVARGLDVPEITHVINYDLPSDTESYVHRIGRTGRAGRSGEAILFYRGKERHLLR 360

Query: 359 AIEKLIEKKVDWLN 372
             EKL    +++ +
Sbjct: 361 HYEKLTNGSIEYFD 374


>gi|219559266|ref|ZP_03538342.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T17]
          Length = 508

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 148/381 (38%), Positives = 218/381 (57%), Gaps = 22/381 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+  ++V A+ + G  +P  IQ  T+PL L   DV G A+TG GKT +F +P+L  
Sbjct: 9   FAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQR 68

Query: 63  LEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGK--------------NYNLTVAL 105
           +  G   R     PR L++ PTREL  QV D+    GK                 L+V  
Sbjct: 69  ITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVS 128

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG P+E Q + L  GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P
Sbjct: 129 IYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLP 188

Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVA 223
            I+ I   +P  RQ++LFSATM D +  ++  F+  P  I    P S+A  +  E     
Sbjct: 189 DIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYR 248

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            +A    K  L+ ++LQ++D     +IF   K+    +   L ++GF+V A+HG++ Q +
Sbjct: 249 AHAL--DKVELVSRVLQARDRGAT-MIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLA 305

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R K L  F+ G I ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G
Sbjct: 306 REKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTG 365

Query: 344 KAFTLVAKEDIKHIDAIEKLI 364
            A TLV  +++     I++ +
Sbjct: 366 VAVTLVDWDELPRWSMIDQAL 386


>gi|117919870|ref|YP_869062.1| 4a-hydroxytetrahydrobiopterin dehydratase [Shewanella sp. ANA-3]
 gi|117612202|gb|ABK47656.1| 4a-hydroxytetrahydrobiopterin dehydratase [Shewanella sp. ANA-3]
          Length = 427

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 147/369 (39%), Positives = 208/369 (56%), Gaps = 16/369 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+   +   + +  Y  PTPIQ  TIP VL   DV   A TG+GKTA+F +P+L 
Sbjct: 10  SFAELGIIAPLCNRLSELTYAAPTPIQAATIPAVLSGRDVLAGANTGSGKTAAFAVPLLQ 69

Query: 62  IL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113
            L      EK   +VR    L+L PTRELA QVAD+F  Y  ++N  L +    GG+   
Sbjct: 70  RLFEAKTAEKSAGQVR---CLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVN 126

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L  GADVL+ TPGR+LD      L +N +  LV+DEADRML +GF   +  +   
Sbjct: 127 LQMQSLRAGADVLVATPGRLLDLLASNALKLNRVSALVLDEADRMLSLGFTDELNQVLEA 186

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  +QTLL+SAT  +E++ ++   L  P  +E +  S    TIE   +       +K A
Sbjct: 187 LPSKKQTLLYSATFPEEVRALTAKLLHQP--LEYHLQSEQESTIEQRVITV--NREQKTA 242

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L++ Q      +IF + K    +L   L K+G S    HG+  Q +R ++L  FK 
Sbjct: 243 LLAHLIK-QHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKS 301

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I +++A+D+AARG+DI  +  V NFD+P    +Y+HRIGR+GRAG  G A TL++ E+
Sbjct: 302 GEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEE 361

Query: 354 IKHIDAIEK 362
             H   IEK
Sbjct: 362 YHHFGVIEK 370


>gi|152977726|ref|YP_001343355.1| ATP-dependent RNA helicase RhlB [Actinobacillus succinogenes 130Z]
 gi|189040023|sp|A6VKC3|RHLB_ACTSZ RecName: Full=ATP-dependent RNA helicase rhlB
 gi|150839449|gb|ABR73420.1| DEAD/DEAH box helicase domain protein [Actinobacillus succinogenes
           130Z]
          Length = 413

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 153/412 (37%), Positives = 237/412 (57%), Gaps = 14/412 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P+++ A+ D  +   TPIQ  ++PL LQ  DV G AQTGTGKT +F+      
Sbjct: 11  FADLPLHPQILAALNDQNFEYCTPIQALSLPLTLQGKDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  LEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L   +       PR LIL PTRELA Q+A + E   +   L +AL  GG  ++ Q K +E
Sbjct: 71  LLTHQPDFITNQPRALILAPTRELAVQIAHDAESLAQTTKLRIALAYGGDGYDKQLKTIE 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TR 178
            G D+LI T GR++D+  +G +  N+I+++V+DEADRM D+GFI  I+ +    P   +R
Sbjct: 131 NGVDILIGTTGRVIDYVKQGIIRFNDIQVVVLDEADRMFDLGFIKDIRYLLRKCPAPKSR 190

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237
            T+LFSAT++ ++++++   + +P+ IE+     T   I E  F   Y     K ALL  
Sbjct: 191 LTMLFSATLSYKVRELAFEDMNDPEYIEIEPLQKTGHRIKEELF---YPSNRDKMALLMT 247

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ ++  +  IIF N K     +   L   G  V  + G++ Q+ R+ +L  F +G + 
Sbjct: 248 LLE-EEWPERCIIFANTKHRCEEIWGYLAADGQRVGLLTGDVAQKKRLALLKQFTDGELD 306

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IPDV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   ++   ++
Sbjct: 307 ILVATDVAARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGMSISFACEQYAMNL 366

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            AIE+ I   +      +S  +P     D+ +    ++N+ IP  S  + +R
Sbjct: 367 PAIEEYIGHHI-----PVSQYDPDSLINDLPKPYRIKRNHTIPHSSRDYKKR 413


>gi|41409410|ref|NP_962246.1| RhlE [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41398241|gb|AAS05862.1| RhlE [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 505

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 146/374 (39%), Positives = 217/374 (58%), Gaps = 16/374 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+  ++V A+ + G   P  IQ  T+PL L   D+ G A+TG GKT +F +P+L  
Sbjct: 12  FAQLGVRDEIVRALDEKGIQHPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQR 71

Query: 63  LEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIPFE 113
           +  G   RA    PR L++ PTREL  QV D+     K+        L+V  + GG P+E
Sbjct: 72  ITAGTAPRALNGTPRALVVVPTRELCLQVTDDLTLAAKHLTADGGRPLSVVPIYGGRPYE 131

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+ I   
Sbjct: 132 PQIDALRAGADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQ 191

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE---TIEHCFVATYAQYSK 230
           +P  RQ++LFSATM D +  ++  F+  P  I    P S A    T+++ +    A    
Sbjct: 192 IPDDRQSMLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQYVY---RAHALD 248

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K  L+ ++LQ++      +IF   K+    +   L ++GF V A+HG++ Q +R K L  
Sbjct: 249 KVELVSRVLQAESRGAT-MIFTRTKRTAQKVADELAERGFKVGAVHGDLGQVAREKALKA 307

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I ++VA+D+AARG+DI DV HV N+ +P   + Y+HRIGRTGRAG+ G A TLV 
Sbjct: 308 FRTGDIDVLVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKAGVAVTLVD 367

Query: 351 KEDIKHIDAIEKLI 364
            +++     I+K +
Sbjct: 368 WDELARWALIDKAL 381


>gi|47570033|ref|ZP_00240694.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|47553285|gb|EAL11675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
          Length = 451

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 143/364 (39%), Positives = 221/364 (60%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ + IP++L   D+ G A+TGTGKT +FVLP   
Sbjct: 3   NFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLP--- 59

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
           ILEK        + LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 60  ILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T  TIE   + T    +K  AL  + + 
Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 297 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGIAITFVAAKDEKHLEEI 356

Query: 361 EKLI 364
           EK +
Sbjct: 357 EKTL 360


>gi|332535929|ref|ZP_08411636.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034692|gb|EGI71243.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 422

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 142/370 (38%), Positives = 220/370 (59%), Gaps = 15/370 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
           +F +LGL P+++  + D  Y +PTPIQ + IP +L   D+   A TG+GKTA+F LPML 
Sbjct: 9   NFNELGLIPELIARLSDLEYTQPTPIQAQAIPSILTGSDLIAGANTGSGKTATFALPMLQ 68

Query: 61  -TILEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113
              LE G     ++      LIL PTRELA QVAD+ + Y  N+N  +    + GG+   
Sbjct: 69  KAFLELGAKSTTSKGNFVTGLILVPTRELATQVADSVKSYSANFNGAIKTVAVFGGVSVN 128

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L  GAD+++ TPGR+LD  +   + ++ +  LV+DEADRML +GF   + ++ +L
Sbjct: 129 TQMQALRGGADIIVATPGRLLDLISSNAIKLDKVTTLVLDEADRMLSLGFTEELADLLAL 188

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKC 232
           +P  +QT+LFSAT  ++++ +++  L +P  I+V N   ST   ++  F     +   K 
Sbjct: 189 MPAKKQTMLFSATFPEQVKLLTQELLNDPVEIQVQNKDEST--LVQRVFTVNKGE---KT 243

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            +L  L+++    +  +IF N KK+  +L   LEK+G +    HG+  Q  R +++  FK
Sbjct: 244 TVLAHLIKTHK-WRQVLIFVNAKKDCEHLAAKLEKRGVNAQVFHGDKGQSERTRVIEKFK 302

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G I++++A+D+AARGLDI  +  V NF++P    +Y+HRIGR+GRAG  G A +LV  E
Sbjct: 303 AGEIEVLIATDIAARGLDIEKLPVVINFNLPRSPADYMHRIGRSGRAGEVGLALSLVDYE 362

Query: 353 DIKHIDAIEK 362
           D  H   IEK
Sbjct: 363 DFHHFKVIEK 372


>gi|89094340|ref|ZP_01167281.1| ATP-dependent RNA helicase, DEAD box family protein
           [Oceanospirillum sp. MED92]
 gi|89081399|gb|EAR60630.1| ATP-dependent RNA helicase, DEAD box family protein
           [Oceanospirillum sp. MED92]
          Length = 412

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 156/402 (38%), Positives = 240/402 (59%), Gaps = 18/402 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  V+ AV +AGY + +P+Q + IP VL   D+   A+TGTGKTA+F LP+L
Sbjct: 1   MLFKDLCLSQPVLQAVENAGYHEASPVQAEAIPAVLSGKDLLVGAKTGTGKTAAFALPVL 60

Query: 61  TILEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L    ++V    ++ + L+L PTRELA QV ++F+KY K   L  A+  GG+    Q 
Sbjct: 61  DQLLNTSSQVQPDKKVIKALVLVPTRELAQQVNNSFKKYAKGTGLRSAVAYGGVGIGPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L++G D+L+ TPGR+LD   +    +  IE L+ DEADRMLDMGF   I+ + S +P 
Sbjct: 121 DQLKQGVDLLVATPGRLLDLCKKKAANLREIEFLIFDEADRMLDMGFRDEIKAVISKLPK 180

Query: 177 ----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                RQ +LFSAT+ D + K S+N L  P+ IEV+   S+A+ ++   +      ++K 
Sbjct: 181 REQKARQVMLFSATLNDRIFKFSKNLLLKPQVIEVDQRGSSADNVDQ--IIYNCDPARKY 238

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            +   L++++   +  ++F   K+    L   L +QG     IH +  Q+ R   LS FK
Sbjct: 239 EITSYLIKNRGWAQV-MVFSQTKQGADKLQQYLSEQGLETDVIHADRTQKQREDALSQFK 297

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
              ++++VA+D+AARG+DI ++  V N ++P +AE+YIHRIGRTGRAG  G A +L+ +E
Sbjct: 298 SQKLKVLVATDVAARGIDIAELPAVINLEMPFKAEDYIHRIGRTGRAGSQGVAISLLIEE 357

Query: 353 DIKHIDAIEKLIEKKV--DWLNGDLSSLNPPLEK-IDIAQHN 391
           +   ++AIE LI++++   WL G      P L + I+I + N
Sbjct: 358 ENYLLEAIEALIDERLPQQWLTG----FEPDLSREIEIKRSN 395


>gi|113969134|ref|YP_732927.1| ATP-dependent RNA helicase SrmB [Shewanella sp. MR-4]
 gi|113883818|gb|ABI37870.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 420

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 140/368 (38%), Positives = 219/368 (59%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P ++ ++   G++ PT IQ +T+P  L++ D+   A TGTGKTASF+LP L
Sbjct: 1   MQFEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPAL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +++  R      R LIL PTRELA+Q+         +  L +A++ GG+P+  Q + L
Sbjct: 61  QHLIDFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   D+L+ TPGR++++ ++GK    +++IL+IDEADRMLDMGF   ++ I       +Q
Sbjct: 121 KGNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQ 180

Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            +LFSAT+    + + +   L +P  I+V+ P      I H ++        K ALL  L
Sbjct: 181 NMLFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKI-HQWIHLADDKDHKIALLCHL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ Q+ +K  I+F   +  V +L   L K G     + G+++Q+ R + LS F +G + +
Sbjct: 240 LK-QEEVKRAIVFVKTRDVVSSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI D+ HV NFD+P  A+ YIHRIGRTGRAG  G A +L    D++ + 
Sbjct: 299 LLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVG 358

Query: 359 AIEKLIEK 366
            IE+ IE+
Sbjct: 359 KIERYIEQ 366


>gi|126173575|ref|YP_001049724.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125996780|gb|ABN60855.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 472

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 142/376 (37%), Positives = 222/376 (59%), Gaps = 15/376 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY + T +Q K IPL  +  D+   AQTGTGKTASF LP  
Sbjct: 1   MKFETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTASFALP-- 58

Query: 61  TILEKGRARVRMP--------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            +LEK  A             R L++ PTRELA QV +N +KY +   L    + GG   
Sbjct: 59  -VLEKLAAESLTSDSNDKPILRALVMTPTRELAIQVCENIQKYSQFLPLKTLAVYGGANM 117

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q K +E+G D+L+ TPGR+ D   + +L ++++  LVIDEADRMLDMGF+  I+ +  
Sbjct: 118 NPQRKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKR 177

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L+    QT+LFSAT +D +++++E  L  P+ + V   ++ +  ++  +        +K 
Sbjct: 178 LIAPQHQTMLFSATYSDAVKQLAEKMLNEPQWVNVADTTTASTVVQEVY---RVDKRRKA 234

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL +L+  ++  +  ++F + K++  +L   L+  G +    HG+  Q +R ++L  FK
Sbjct: 235 ELLSELV-GRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEEFK 293

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
              ++++VA+D+AARGLDI  +  V N ++P  AE+YIHRIGRTGRAG  G+A + V+  
Sbjct: 294 ASKLRVLVATDVAARGLDIQALPMVINLELPFLAEDYIHRIGRTGRAGLTGRAISFVSPS 353

Query: 353 DIKHIDAIEKLIEKKV 368
           D + +  IE LIE+K+
Sbjct: 354 DDEMLAEIEALIEQKL 369


>gi|78777961|ref|YP_394276.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251]
 gi|78498501|gb|ABB45041.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 540

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 146/393 (37%), Positives = 221/393 (56%), Gaps = 11/393 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL  +++ +V DAG+  P+PIQ   IP +L   D+ G A TGTGKTA+F LP L  
Sbjct: 16  FDDLGLKKEILRSVKDAGFTVPSPIQAAAIPFILAGRDIVGQAHTGTGKTAAFGLPALNN 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +            L++ PTRELA QV+D   KYG+N       + GG  +  Q   ++RG
Sbjct: 76  INPNDG----VGILVITPTRELATQVSDELFKYGRNIGARTVTVYGGSSYNRQIDLIQRG 131

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A V++ TPGR+LD   +  L      I+V+DEAD MLDMGF+  I  I S +P  RQTLL
Sbjct: 132 ASVVVATPGRLLDILKKNLLKDFAPSIVVLDEADEMLDMGFLDDINEIFSYLPSNRQTLL 191

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   ++ ++E  L NP+ I +    +T   I   +     + S++   + +L+ ++
Sbjct: 192 FSATMPKPIKLLAERILDNPEFISITKGETTNTDINQEYYVI--EESERDDAIIRLMDAE 249

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K+ I+FC  K  V  L + L   G+    +HG+++QR R  ++  FK   ++++VA+
Sbjct: 250 ACQKS-IVFCRTKSEVDRLSNVLSSAGYLANGLHGDMEQRQRETVIKGFKNNGVKVLVAT 308

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+ + ++ HVFN+ +P   E+Y+HRIGRTGRAG  GKA TL+   + K +  I+ 
Sbjct: 309 DVAARGIHVDNISHVFNYHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRIKT 368

Query: 363 LIEKKVDWL----NGDLSSLNPPLEKIDIAQHN 391
            +   +         DL ++N       I +HN
Sbjct: 369 KVGTTMTHAFVPSKNDLRAINLKSIATSIEEHN 401


>gi|148978426|ref|ZP_01814920.1| putative ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3]
 gi|145962452|gb|EDK27731.1| putative ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3]
          Length = 428

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 147/370 (39%), Positives = 216/370 (58%), Gaps = 15/370 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
           +F+DLGL   ++  + +  Y +PTPIQ + IP VL   D+   A TG+GKTA+F LP+L 
Sbjct: 9   NFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQ 68

Query: 61  -----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113
                  L++   +      LIL PTRELA QVAD+ + Y  ++N  +    + GG+   
Sbjct: 69  QIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVN 128

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L  G D+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  I  L
Sbjct: 129 TQMQSLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKL 188

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKC 232
           +P  +QTLLFSAT  +++Q ++   L +P  IEV   S+ A T ++  F     +  +K 
Sbjct: 189 LPSKKQTLLFSATFPEQVQTLTHELLTDP--IEVQLQSANASTLVQRVF---EVEKGRKT 243

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           ALL  L+Q Q   +  +IF N K +  +L   L K+G      HG+  Q SR +IL +FK
Sbjct: 244 ALLAHLIQ-QHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFK 302

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G I +++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G A +L+  E
Sbjct: 303 SGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHE 362

Query: 353 DIKHIDAIEK 362
           D  H   IEK
Sbjct: 363 DYHHFKIIEK 372


>gi|228991413|ref|ZP_04151368.1| ATP-dependent RNA helicase [Bacillus pseudomycoides DSM 12442]
 gi|228768343|gb|EEM16951.1| ATP-dependent RNA helicase [Bacillus pseudomycoides DSM 12442]
          Length = 433

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 138/364 (37%), Positives = 223/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+V+   D+ G A+TGTGKT +FVLP+L 
Sbjct: 3   NFLELGISETFNHTLRENGIAEATPIQEKAIPVVMAGKDIIGQAKTGTGKTLAFVLPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    EK      N+ V  + GG     Q +KL+
Sbjct: 63  KIDPESSDVQ---ALIVAPTRELALQITTEIEKMLVHQENINVLAIYGGQDVAQQMRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  ++++N+ +LV+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETPESKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ +++ P+ I++ +   T   I+   + T    +K+ AL   + +
Sbjct: 180 MLFSATMPKDIKKLAKRYMKEPEMIQIQSAEVTVNNIKQGIIET-TDRTKQDALRHVMDR 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   +IFC  K+    L   L+  G++   +HG++ Q  R +++ +F++  IQ ++
Sbjct: 239 DQPFL--AVIFCRTKRRASKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFRDAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D  ++  I
Sbjct: 297 ATDVAARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAPKDEMYLKEI 356

Query: 361 EKLI 364
           EK I
Sbjct: 357 EKGI 360


>gi|168025828|ref|XP_001765435.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683285|gb|EDQ69696.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 535

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 143/376 (38%), Positives = 208/376 (55%), Gaps = 29/376 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++A+  LSP+++ AV   GY KP+PIQ+  IP+ LQ+ DV GIA+TG+GKTA+FVLPMLT
Sbjct: 115 NWAEGALSPELLKAVQKVGYTKPSPIQMAAIPIGLQQRDVIGIAETGSGKTAAFVLPMLT 174

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + K            P  +++ PTRELA Q+ D   K+    ++ V  ++GG   E Q 
Sbjct: 175 YISKLPPMTEEIEAEGPYAVVMAPTRELAQQIEDETVKFAHFLDIRVVSIVGGQSIEEQG 234

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            KL +G +V+I TPGR+LD   R   ++N    +V+DEADRM+DMGF P +  +   +P 
Sbjct: 235 FKLRQGCEVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPS 294

Query: 177 T-----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
           +                 R T +FSATM   +++++  +L+NP  + + T     + I  
Sbjct: 295 SNLKPENEDAELDTHKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQ 354

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTM--KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
             +       K+   L +L +  + M  K  IIF N KK+   L   L+K G+ V  +HG
Sbjct: 355 HVIMV-----KETEKLDRLCRVLNDMGDKTAIIFVNTKKSADTLSRQLDKNGYRVTTLHG 409

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
              Q  R   L  F+      +VA+D+A RG+DIPDV HV N+D+P   E Y HRIGRTG
Sbjct: 410 GKTQEQREVSLDGFRNKRFNCLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTG 469

Query: 338 RAGRHGKAFTLVAKED 353
           RAG+ G A T +   D
Sbjct: 470 RAGKTGIATTFLTLHD 485


>gi|282164729|ref|YP_003357114.1| putative ATP-dependent RNA helicase [Methanocella paludicola SANAE]
 gi|282157043|dbj|BAI62131.1| putative ATP-dependent RNA helicase [Methanocella paludicola SANAE]
          Length = 471

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 142/370 (38%), Positives = 217/370 (58%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS   + A+   G+ + TPIQ + IP  L   DV G AQTGTGKTA+F +PM+  
Sbjct: 4   FQELSLSNATLKALAGMGFEEATPIQEQAIPAALAGKDVIGQAQTGTGKTAAFGIPMIEN 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++ G   ++    +++ PTRELA QVA+   + G+   +    + GG   + Q   L+R 
Sbjct: 64  IDAGSGDIQ---GIVITPTRELAVQVAEELNRIGEFRGIHTLPIYGGQDIKRQINGLKRR 120

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++ TPGR++DH  R K + + NI  +V+DEAD MLDMGFI  I+ I    P  RQTL
Sbjct: 121 PQIIVGTPGRLVDHMMRRKTISLKNIRTVVLDEADEMLDMGFIEDIEEILKRTPEGRQTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           LFSAT+   ++K++E F+++P+ I + + S T    E  +  V    ++   C LL   L
Sbjct: 181 LFSATIPAPIRKLAERFMKDPQTIGIKSKSMTVSGTEQAYYEVPEKHKFEVLCRLLDVQL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       I+F   K+ V  L  +L ++G+    IHG++ Q  R  ++  FKEGT +++
Sbjct: 241 PAL-----AIVFVRTKRRVDELTKALGERGYPAEGIHGDLAQSKRDSVMRGFKEGTTEVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N D+P   ++Y+HRIGRTGRAG+ G A T V   ++  +  
Sbjct: 296 VATDVAARGLDISGVTHVYNLDIPQDPDSYVHRIGRTGRAGKKGTAITFVTPREMGLLRF 355

Query: 360 IEKLIEKKVD 369
           IEK+    ++
Sbjct: 356 IEKITRHSIE 365


>gi|212633620|ref|YP_002310145.1| ATP-dependent RNA helicase DbpA [Shewanella piezotolerans WP3]
 gi|212555104|gb|ACJ27558.1| ATP-dependent RNA helicase DbpA [Shewanella piezotolerans WP3]
          Length = 458

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 143/369 (38%), Positives = 224/369 (60%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L  +++  +   G+   TPIQ +++P +L   DV G A+TG+GKTA+F L +L
Sbjct: 1   MPFSTLKLKTELLDNLTTMGFESMTPIQAQSLPAILNGEDVIGQAKTGSGKTAAFGLGLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             L+  R R++   +L++ PTRELA QVA       +  +N+ V  L GG+P   Q   L
Sbjct: 61  HKLDVKRFRIQ---SLVMCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH +RG+L ++++  LV+DEADRMLDMGF   ++ I   VP  RQ
Sbjct: 118 EHGAHIIVGTPGRIIDHLDRGRLHLDDVHTLVLDEADRMLDMGFQVELEAIVEQVPVERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  ++++ ++++ +  P  ++V +   T+ TI+  F        +  AL  +LL
Sbjct: 178 TLLFSATFPEQIKSIADSIMFKPVLVKVASTHETS-TIDQHFYEVGNNNDRMRAL--KLL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   ++ ++FCN K+   ++   L+  GFSV A+HG+++QR R + L  F   ++ +M
Sbjct: 235 LLQHRPESAVVFCNTKRETKDVAAQLKNDGFSVVALHGDLEQRDRDQTLLQFANKSVSIM 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+ +    E +IHRIGRTGRAG  G A T  + ED   +  
Sbjct: 295 VATDVAARGLDIDALDAVINYHIAFDTEVHIHRIGRTGRAGSKGAAHTFYSDEDGYKVAL 354

Query: 360 IEKLIEKKV 368
           +E  +E+ +
Sbjct: 355 LEDYLERDI 363


>gi|169630612|ref|YP_001704261.1| ATP-dependent DEAD-box RNA helicase [Mycobacterium abscessus ATCC
           19977]
 gi|169242579|emb|CAM63607.1| Probable ATP-dependent DEAD-box RNA helicase [Mycobacterium
           abscessus]
          Length = 490

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 150/375 (40%), Positives = 220/375 (58%), Gaps = 16/375 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+  ++  A+ +AG   P  IQ  T+PL L   D+ G A+TG GKT +F +P+L  
Sbjct: 8   FAQLGVRKEIARALREAGIEHPFAIQELTLPLALAGSDLIGQARTGMGKTYAFGVPLLHR 67

Query: 63  LEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGK-----NYNLTVALLIGGIPFEA 114
           +  G   R     PR L++ PTREL  QV ++  K  K     + + TV  + GG P+E 
Sbjct: 68  IATGVEDRPLNGTPRALVVVPTRELCIQVYEDLTKASKYLSAGDRDFTVVSIYGGRPYEP 127

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L  GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+ I +L 
Sbjct: 128 QIEALRAGADVVVGTPGRLLDLAQQGHLQLGGLAMLVLDEADEMLDLGFLPDIERILALA 187

Query: 175 PFT---RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP--SSTAETIEHCFVATYAQYS 229
           P     RQ++LFSATM D +  ++  F+  P  I    P  SS  ++ E      +A   
Sbjct: 188 PSADAGRQSMLFSATMPDPIITLARTFMNRPTHIRAEDPQASSVHDSTEQFVYRAHAL-- 245

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            K  L+ ++LQ+ D     +IF   K+    +   L ++GF+V A+HG++ Q +R K L+
Sbjct: 246 DKIELVSRILQA-DGRGATMIFTRTKRTAQKVSDELAERGFAVGAVHGDLGQIAREKALT 304

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G I ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G A TLV
Sbjct: 305 SFRSGQINVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGIAVTLV 364

Query: 350 AKEDIKHIDAIEKLI 364
             +DI     I+K +
Sbjct: 365 DWDDIARWQLIDKAL 379


>gi|313225950|emb|CBY21093.1| unnamed protein product [Oikopleura dioica]
          Length = 485

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 142/368 (38%), Positives = 218/368 (59%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F + G+   ++  V  AGYV PT IQ ++ P+ L   D+ GIA+TG+GKT +FVLP +
Sbjct: 55  LQFMEAGIPDYLMGTVTAAGYVTPTTIQSQSWPIALSGADMQGIARTGSGKTLAFVLPSI 114

Query: 60  LTILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + I+ +   R    P  +IL PTRELA QV +  E++GK   +    + GG    AQ   
Sbjct: 115 IHIMAQPDLRPGDGPVAVILAPTRELAKQVQEVAEQFGKPCGVNTVAVYGGADKRAQIGA 174

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERGA +++  PGR+LD    G+  ++    L++DEADRMLDMGF P I+ I   +   R
Sbjct: 175 LERGAHIVVACPGRLLDLIQSGRTNLHRTTFLILDEADRMLDMGFEPQIRKIVGQIRQDR 234

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT   E+QK++ +F++ P +I +     TA       V   + + K  A+    
Sbjct: 235 QTLMFSATWPKEIQKLASDFMKTPTQIFIGNQELTANPNIEQVVEVVSDFDK--AMRFNY 292

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q T    ++F + K++  NL +++        AIHG+ DQR R ++L +F+ G I +
Sbjct: 293 WFQQITSPKILVFTDTKRDCDNLAYTMSNGRVRCAAIHGDKDQRERERVLKDFRNGQISV 352

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+G V N+D P++ E+Y+HRIGRT R  + GK+ + +  +  KH  
Sbjct: 353 LVATDVAARGLDIDDIGTVINYDFPSQLEDYVHRIGRTARGEKKGKSISFITAKSAKHAS 412

Query: 359 AIEKLIEK 366
           A+ KL+E+
Sbjct: 413 ALVKLLEQ 420


>gi|52145260|ref|YP_086717.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
 gi|51978729|gb|AAU20279.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
          Length = 481

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 132/362 (36%), Positives = 219/362 (60%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  LS +V  A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  ++  P  IE+     T + IEH       +  +K +LL+ +   +
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R  ++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE 
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEA 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|323691087|ref|ZP_08105368.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           symbiosum WAL-14673]
 gi|323504856|gb|EGB20637.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           symbiosum WAL-14673]
          Length = 552

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 138/367 (37%), Positives = 226/367 (61%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L  K++ AV D G+   +PIQ ++IPL L+  D+ G AQTGTGKTA+F +P+L  
Sbjct: 6   FEDLNLDAKILRAVTDMGFEAASPIQGQSIPLELEGLDIIGQAQTGTGKTAAFGIPLL-- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
            +K   + +  + +IL PTRELA QV++   +  K  + + V  + GG     Q + L+ 
Sbjct: 64  -QKVDPKSKKLQAIILCPTRELAIQVSEEIRRLAKYMHGVKVLPIYGGQEIGRQIRSLKD 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+I TPGR++DH  R  L + ++  +V+DEAD ML+MGF+  ++ I S +P  RQT+
Sbjct: 123 GIQVIIGTPGRVMDHMRRKTLKLEHVHTVVLDEADEMLNMGFLEDMETILSELPEERQTV 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM   + ++++ F ++P+ ++V     T   +   +     +   K  ++ +LL  
Sbjct: 183 MFSATMPPAIAEIAKKFQKDPEIVKVVKKELTVPKVTQYYYEVKPK--TKVEVMCRLLDM 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D  K  I+FCN K+ V +L   L+ +G+    +HG++ Q  R +++++F+ G   +++A
Sbjct: 241 YDP-KLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDILIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR GKAF+LV   ++  +  I+
Sbjct: 300 TDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVVGREVYKLREIQ 359

Query: 362 KLIEKKV 368
           +  + K+
Sbjct: 360 RYCKTKI 366


>gi|229150655|ref|ZP_04278869.1| ATP-dependent RNA helicase [Bacillus cereus m1550]
 gi|228632742|gb|EEK89357.1| ATP-dependent RNA helicase [Bacillus cereus m1550]
          Length = 454

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 139/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ + IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 66  KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFIM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|291486518|dbj|BAI87593.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. natto BEST195]
          Length = 479

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 134/362 (37%), Positives = 217/362 (59%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  +S  ++ A+   GY +PT +Q   IP  L+R D+   +QTG+GKTASF +P+  +
Sbjct: 4   FKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLCEL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +    +   P+ LIL PTRELA QV ++    G+   +    + G   F+ Q  +L++ 
Sbjct: 64  ADWDENK---PQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQK 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGR+LDH  +G L ++ +  LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 121 SHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTML 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++K+S  ++QNP+ IE+     T   IEH  +    +   K +LL+ +L ++
Sbjct: 181 FSATLPEDIEKLSRQYMQNPEHIEIKAAGLTTRNIEHAVIQVREE--NKFSLLKDVLMTE 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  K++V  L   L+  G+    IHG + Q  R  +++ FK G  + +VA+
Sbjct: 239 NP-DSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++  V N+D+P   E+Y+HR GRTGRAG  GKA + V   + + +  IE+
Sbjct: 298 DVAARGIDIENISLVINYDLPVEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEE 357

Query: 363 LI 364
            I
Sbjct: 358 YI 359


>gi|30265472|ref|NP_847849.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47531039|ref|YP_022388.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188291|ref|YP_031544.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|65317435|ref|ZP_00390394.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|165872531|ref|ZP_02217164.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167636244|ref|ZP_02394547.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|167641411|ref|ZP_02399661.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170689199|ref|ZP_02880396.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|170708677|ref|ZP_02899116.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|177651890|ref|ZP_02934473.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190568924|ref|ZP_03021826.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|218906634|ref|YP_002454468.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|228930460|ref|ZP_04093460.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228949176|ref|ZP_04111444.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229124957|ref|ZP_04254131.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 95/8201]
 gi|229600530|ref|YP_002869663.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254687105|ref|ZP_05150963.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254724112|ref|ZP_05185897.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. A1055]
 gi|254733618|ref|ZP_05191335.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254742162|ref|ZP_05199849.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Kruger B]
 gi|254755928|ref|ZP_05207960.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Vollum]
 gi|254761640|ref|ZP_05213660.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Australia 94]
 gi|30260150|gb|AAP29335.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47506187|gb|AAT34863.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49182218|gb|AAT57594.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|164711754|gb|EDR17298.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167510586|gb|EDR85982.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|167528359|gb|EDR91130.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170126459|gb|EDS95347.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|170666842|gb|EDT17608.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|172082594|gb|EDT67658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190559991|gb|EDV13974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|218536757|gb|ACK89155.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|228658458|gb|EEL14124.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 95/8201]
 gi|228810459|gb|EEM56812.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228829179|gb|EEM74816.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229264938|gb|ACQ46575.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
          Length = 481

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 132/362 (36%), Positives = 219/362 (60%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  LS +V  A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  ++  P  IE+     T + IEH       +  +K +LL+ +   +
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R  ++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE 
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEA 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|325295336|ref|YP_004281850.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065784|gb|ADY73791.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 425

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 155/392 (39%), Positives = 229/392 (58%), Gaps = 10/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F    L  KV  ++ + G+  PTPIQ + IPL L+ +D+ G AQTGTGKTA+F +P  
Sbjct: 11  MEFTFNQLDLKVQKSLEEMGFESPTPIQKEAIPLALEGYDIVGQAQTGTGKTAAFGIP-- 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I+E   +R R  + ++L PTRELA QVA      GKN  ++   + GG+  E Q   L+
Sbjct: 69  -IIENINSRERGVKAIVLTPTRELAIQVAHELSLIGKNKGVSAYPIYGGVSIERQANILK 127

Query: 121 RGAD-VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           RG + +++ TPGR+ D  +RG L ++ +   V+DEAD+MLDMGFI  I+ I S  P  +Q
Sbjct: 128 RGRNQIVVGTPGRVKDLISRGLLKLDRVRFAVLDEADQMLDMGFIEDIEEILSKTPREKQ 187

Query: 180 TLLFSATMTDELQKVSENFLQNP-KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           TLLFSATM  E++K+ +N+L++  K I+V     T +  +           K    L + 
Sbjct: 188 TLLFSATMPYEIRKLIDNYLKSGYKTIKVGKNLITPKVHQRIIFVKSEDKLKALEKLLKE 247

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            Q   T    I+F   K++   +   L+K+  +  AIHG++ QR R  ++  FKEG ++ 
Sbjct: 248 HQGTST----IVFVKTKRDAAEIEKELQKRSINARAIHGDLSQRQRENVMKAFKEGKVKT 303

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI DVG V N+++P   E+Y+HRIGRTGRAGR G A +LVA  + + I 
Sbjct: 304 LVATDVAARGIDIKDVGLVINYELPENPESYVHRIGRTGRAGREGTAISLVADNEKRRIY 363

Query: 359 AIEKLIEKKVDWLNG-DLSSLNPPLEKIDIAQ 389
            I+ L   K +     DL  L   L   D+ +
Sbjct: 364 RIKGLKHIKPEKFKANDLRDLKQDLLSADVGK 395


>gi|302412236|ref|XP_003003951.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
 gi|261357856|gb|EEY20284.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
          Length = 486

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 152/396 (38%), Positives = 226/396 (57%), Gaps = 13/396 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FADLG+   +V A    GY  PTPIQ K+IPL L   DV G+A+TG+GKTA+F LP+L  
Sbjct: 63  FADLGVVESLVEATEALGYKHPTPIQEKSIPLALAGRDVIGLAETGSGKTAAFALPVLQA 122

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEK          +++ PTRELAAQ+A  FE  G   NL  A+++GG+    Q   L +
Sbjct: 123 LLEKPSGLF----AVVMAPTRELAAQIAQTFEALGSLINLRCAVIVGGLDMVQQAIALGK 178

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR+LDH  + K   + +++ LV+DEADR+LDM F P I  I   +P  R T
Sbjct: 179 KPHVVVATPGRLLDHLEKTKGFSLRSLKYLVLDEADRLLDMDFGPSIDKILKFIPRERHT 238

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            LFSATM+ +++ +    L++P R+ V  N     +  +++     +A     C  L   
Sbjct: 239 YLFSATMSSKVESLQRASLKDPARVSVQSNGYQVVSTLLQNFLFIPHALKDVYCVHLINS 298

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q T    I+F     +   L   L   GFS   +HG + Q +R+  L+ F+ G+  +
Sbjct: 299 FIGQTT----IVFLRTVHDTQRLAILLRTLGFSALPLHGQLSQSARLGALNKFRAGSRDI 354

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIP+V  V N+D+P  ++ YIHR+GRT RAG+ G+A +LV + D++   
Sbjct: 355 LVATDVAARGLDIPNVDVVINYDLPQDSKTYIHRVGRTARAGKSGRALSLVTQYDLEIWL 414

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
            IE  + KK+D    +   +     +++ AQ  HAR
Sbjct: 415 RIEASMGKKLDEFPTEKEEVMVFQARVEEAQ-RHAR 449


>gi|227818223|ref|YP_002818232.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|227005726|gb|ACP15469.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
          Length = 481

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 132/362 (36%), Positives = 219/362 (60%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  LS +V  A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQVLVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  ++  P  IE+     T + IEH       +  +K +LL+ +   +
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R  ++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE 
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEA 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|24372485|ref|NP_716527.1| ATP-dependent RNA helicase DbpA [Shewanella oneidensis MR-1]
 gi|24346478|gb|AAN53972.1|AE015534_11 ATP-dependent RNA helicase DbpA [Shewanella oneidensis MR-1]
          Length = 458

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 147/369 (39%), Positives = 222/369 (60%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L  +++  +   GY + TPIQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 1   MAFSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             L+  R R++   TL+L PTRELA QVA       +  +N+ V  L GG+P   Q   L
Sbjct: 61  NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH +R +L ++N+ +LV+DEADRML+MGF P +  I    P  RQ
Sbjct: 118 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +++Q +++  + NP  ++    +    TIE  F       S+  AL  QLL
Sbjct: 178 TLLFSATFPEQIQSIAKQIMYNPVMVKAAV-THEKNTIEQHFYQLDDDKSRMQAL--QLL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ ++FCN K+    +   LE  GFSV A+HG+++QR R + L  F   +  ++
Sbjct: 235 LLEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  VFN+ V    E +IHRIGRTGRAG  G A+T    +D   I  
Sbjct: 295 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIAL 354

Query: 360 IEKLIEKKV 368
           +E+ +++++
Sbjct: 355 LEEYLDREI 363


>gi|28211174|ref|NP_782118.1| ATP-dependent RNA helicase [Clostridium tetani E88]
 gi|28203614|gb|AAO36055.1| ATP-dependent RNA helicase [Clostridium tetani E88]
          Length = 481

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 135/368 (36%), Positives = 220/368 (59%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F   G+S  ++ A+L  GY  P+ +Q K IP+ ++  D+   ++TG+GKTASF +P  
Sbjct: 4   LSFKSFGISEDILEALLKLGYKNPSKVQQKVIPVAIKNKDIIVKSKTGSGKTASFGIP-- 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I E      R P+ L+L PTREL  QV ++ +  G+   +  + + G  PF+ Q  +L+
Sbjct: 62  -ICENVNLEERKPQALVLTPTRELCIQVKEDIKNIGRFKRIKCSAIFGKQPFKTQALELK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V++ TPGR LDH  RG + ++ I+  ++DE D M +MGFI  +++I   +P  R  
Sbjct: 121 QRTHVVVGTPGRTLDHIERGTIDLDKIKYFIVDEGDEMFNMGFIDQVESIMRKLPKKRVN 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ ++++K+ E ++++P  IEVN    T E I+H +     +   K  LL ++L 
Sbjct: 181 MLFSATIPEKIEKLCEKYMKSPIMIEVNPEEFTEEKIQHIYYEI--EDKNKFDLLNKILI 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++   + IIFC  ++NV  L   +E + +   A+HG + Q  R+ I++ FK G    +V
Sbjct: 239 TENP-DSSIIFCRTQENVNKLAKLMENKDYPCKALHGGMMQDKRIDIMNRFKRGEFMFLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+D+ +V H+ N+D+P   ENY+HR GRTGRAGR G A +LV   + +    I
Sbjct: 298 ATDLAARGIDVENVTHIINYDIPMEKENYVHRTGRTGRAGREGCAISLVTPYEDRFFKQI 357

Query: 361 EKLIEKKV 368
           E+ I  K+
Sbjct: 358 EEYIGFKI 365


>gi|300741894|ref|ZP_07071915.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
 gi|300381079|gb|EFJ77641.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
          Length = 582

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 144/397 (36%), Positives = 221/397 (55%), Gaps = 21/397 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD G+   +  A+   G V P PIQ  T+P+ L  HD+ G A+TGTGKT  F LP +  
Sbjct: 25  FADFGVRQDISDALAAVGIVSPFPIQEMTLPVALAGHDIIGQAKTGTGKTLGFGLPTIQR 84

Query: 63  LEKGR--------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           +  GR         +   P+ LIL PTRELA QV ++     K  N  VA L GG+P+E 
Sbjct: 85  V-VGRDDDQWGSLQKPGAPQALILVPTRELAIQVGNDLAVASKLRNARVATLYGGVPYEP 143

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++L +G +V++ TPGR++D +  G L +  ++ +V+DEAD MLD+GF+P ++ I   +
Sbjct: 144 QVEQLTKGLEVVVGTPGRLIDLYQHGALTLTQVKTVVLDEADEMLDLGFLPSVEKIMGYL 203

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCA 233
           P  RQT+LFSATM   +  ++  ++  P  I    P   A+T        Y   +  K  
Sbjct: 204 PTDRQTMLFSATMPGPVITMARKYMTKPMHISAADPEDHAKTKASIRQVVYRVHHMDKDE 263

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +L ++L++    +  +IF   K++   +   L  +GF+   +HG+++Q +R + L  F+ 
Sbjct: 264 MLGRILRAHGRGRT-VIFTKTKRDAARVADELIARGFAAAPLHGDLNQGAREQALRAFRN 322

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G + ++VA+D+AARG+D+ DV HV N  VP   + Y+HR GRTGRAG  G A T V  ED
Sbjct: 323 GKVDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGHEGTAVTFVDWED 382

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           I    A  +LI   +D        ++ P+E    ++H
Sbjct: 383 I----ARWRLINDALDL------GVSDPVETYSSSEH 409


>gi|294142598|ref|YP_003558576.1| ATP-dependent RNA helicase RhlB [Shewanella violacea DSS12]
 gi|293329067|dbj|BAJ03798.1| ATP-dependent RNA helicase RhlB [Shewanella violacea DSS12]
          Length = 438

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 153/427 (35%), Positives = 252/427 (59%), Gaps = 17/427 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FAD  L   +  A+ ++G+   TPIQ  ++P++LQ+ D+ G AQTGTGKT +F++     
Sbjct: 11  FADFSLHEGIKTALNESGFEFCTPIQAASLPILLQKKDIAGQAQTGTGKTLAFLVATFEH 70

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            + T + +GR ++  PR +I+ PTRELA Q+A +     K+  L V ++ GG  +E Q K
Sbjct: 71  LLTTPIPEGR-QLNQPRAMIMAPTRELAIQIAKDATLLAKHTGLKVGIVYGGESYEVQRK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
            L++G D+LI T GRI+D+  +G + ++ I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLDKGIDILIGTTGRIIDYVRQGIINLSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDA 189

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234
            +R  +LFSAT++ ++Q+++ + +  P+++ +     T++ I E  F   Y    +K  L
Sbjct: 190 KSRLNMLFSATLSMKVQELAYDHMNEPEKVVIAPNEKTSKNIKEEIF---YPSMDEKMRL 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L++ +D  +  I+F N K +  N+   L   G  V  + G++ Q+ R++IL  F  G
Sbjct: 247 LLSLIE-EDWPEKAIVFSNTKHSCENVWSWLSGDGHRVGLLTGDVPQKKRIRILEQFTTG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG+ G + +   +E  
Sbjct: 306 ELDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGISISFACEEYA 365

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
            ++ AIE+ I   +   N D   L   LE I      H RK+N  PQ  +G  R   + +
Sbjct: 366 LNLPAIEEYILHSIPVSNYDSEGL---LEDIPAPIRIH-RKHNSRPQGRSGSGRSNGSRN 421

Query: 415 SQKSHIP 421
             ++  P
Sbjct: 422 GNRNSAP 428


>gi|160881936|ref|YP_001560904.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160430602|gb|ABX44165.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
           ISDg]
          Length = 527

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 142/370 (38%), Positives = 225/370 (60%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L   ++ A+ + GY + TPIQ + IP+VL+  D+ G AQTGTGKTA+F +P   I
Sbjct: 5   FDEMELQTPIIRAIEELGYEEMTPIQAQAIPVVLEGKDIVGQAQTGTGKTAAFSIP---I 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLER 121
           L+K   +V+  + +IL PTRELA QV+D   K+ K  +   A+ I GG     Q + L+ 
Sbjct: 62  LQKIDPKVKGLQAVILCPTRELAIQVSDEMHKFSKFMHGIKAIPIYGGQDITRQIRSLKA 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR++DH  R  +  + + ++ +DEAD ML+MGF   I+ I   +P  RQTL
Sbjct: 122 GVQIVIGTPGRVMDHMRRKTVKFDKVSMIALDEADEMLNMGFREDIETILKEMPEDRQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +  ++  + ++   ++V     T   IE  +     +   K  +L +LL  
Sbjct: 182 LFSATMPQPIMDIARTYQKDATIVKVVKKELTVPKIEQYYYEVRPK--NKVDVLSRLLDM 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + K  ++FCN K+ V  L  +L  +GF    +HG++ Q+ R +++S+F+ G  +++VA
Sbjct: 240 Y-SPKRCLVFCNTKRQVDELVTALSGRGFFAEGLHGDLKQQQRDRVMSSFRTGKAEILVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+DVP   E Y+HRIGRTGRAGR G+AFTLV  +++  +  I+
Sbjct: 299 TDVAARGIDVDDVEAVFNYDVPQDEEYYVHRIGRTGRAGRTGRAFTLVVGKEVYKLRDIQ 358

Query: 362 KLIEKKVDWL 371
           +  + K+  +
Sbjct: 359 RYCKTKIKVM 368


>gi|313679216|ref|YP_004056955.1| ATP-dependent RNA helicase dbpa [Oceanithermus profundus DSM 14977]
 gi|313151931|gb|ADR35782.1| ATP-dependent RNA helicase DbpA [Oceanithermus profundus DSM 14977]
          Length = 528

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 138/367 (37%), Positives = 210/367 (57%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS + + A+ + G   PTPIQ + +P  L   DV G+A+TGTGKT +F LP+   
Sbjct: 11  FRELGLSEQALAALEEKGIATPTPIQNEALPAALAGGDVLGLARTGTGKTLAFALPIAER 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE  R   R PR L+L PTRELA QVA   E    +  L +  + GG  + +Q   L+RG
Sbjct: 71  LEPSRTPGRPPRALVLAPTRELALQVAGELEWVAPH--LRIVTVYGGTGYGSQAAALKRG 128

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADV++ TPGR +D+ NRG L +  + I V+DEAD ML MGF   ++ +    P  RQTL+
Sbjct: 129 ADVVVATPGRAIDYLNRGVLDLAQVRIAVLDEADEMLSMGFEEAVETLLGATPAERQTLM 188

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+    +++    L+ P  + V       E + +  +A  A  S + + L  LL + 
Sbjct: 189 FSATLPGWAKRLVGRHLKEPTVVNVVQD----EEVSYREIAIEASPSARMSALSDLLHAH 244

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+F   KK    +  +L  +G +  A+HG+++Q  R + +  F+ G + ++VA+
Sbjct: 245 GP-ERAIVFTRTKKEADEVARALTARGHAAEAVHGDLNQTQRERSVGRFRSGQVGVLVAT 303

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIP+V  V +  +P RAE+Y HR GRTGRAGR G      +  + + +  +E+
Sbjct: 304 DVAARGLDIPEVDLVVHLRLPERAESYQHRSGRTGRAGRSGTVIIFHSSRERRELGQLER 363

Query: 363 LIEKKVD 369
            + +K +
Sbjct: 364 AVGRKFE 370


>gi|88857246|ref|ZP_01131889.1| RNA helicase DeaD [Pseudoalteromonas tunicata D2]
 gi|88820443|gb|EAR30255.1| RNA helicase DeaD [Pseudoalteromonas tunicata D2]
          Length = 624

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 138/372 (37%), Positives = 224/372 (60%), Gaps = 9/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L   V+ A+ + GY+ PTPIQ + IP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 9   FDQLNLLAPVLQAINEMGYITPTPIQSQAIPSLLAGKDVLGEAQTGTGKTAAFGLPLLSR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+   A ++ P+ L++ PTRELA QVA+    + K+   L VA + GG  +  Q + L R
Sbjct: 69  LD---ADLKQPQMLVVCPTRELAIQVAEALTDFAKHIRGLFVATVYGGQSYTPQLRDLAR 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH  +G+L ++N++  V+DEAD ML+MGF+  I+ I + +P   Q  
Sbjct: 126 GPQIVVGTPGRMMDHIKKGRLKLDNLKACVLDEADEMLNMGFLEDIEWILNQIPDQTQMA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ-QLLQ 240
            FSATM   ++K++  FL +P  +++    S    I      T  +  K   L +   + 
Sbjct: 186 FFSATMPAPIKKITNQFLTDPIHVKIAVQKSDKPKITQK-SWTVGRIGKTVGLERIAEVV 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M   I+F   + + + L   L  +GF   A++G++ Q+ R +I+   K G I +++
Sbjct: 245 DYDAM---IVFVRTRNDTLVLAEHLVSKGFKASALNGDMQQQDRERIVEQLKNGRINILI 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD+P + HV N+D+P+ +E+Y+HRIGRTGRAGR G+A    +  +++ +  +
Sbjct: 302 ATDVVARGLDVPRITHVINYDLPHDSESYVHRIGRTGRAGREGEAILFASHREVRSLSRL 361

Query: 361 EKLIEKKVDWLN 372
           E++ E K++  +
Sbjct: 362 ERITEGKIEVFD 373


>gi|262372452|ref|ZP_06065731.1| superfamily II DNA and RNA helicase [Acinetobacter junii SH205]
 gi|262312477|gb|EEY93562.1| superfamily II DNA and RNA helicase [Acinetobacter junii SH205]
          Length = 383

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 143/374 (38%), Positives = 225/374 (60%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++  A+   G+ + TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 5   FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     ++ R R   PR LIL PTRELA Q+  + +   K  +L +  L+GG+ FE Q K
Sbjct: 65  LLTNPVQEQRFRGE-PRALILAPTRELALQIESDAQHLTKFTDLHLVTLLGGVDFEKQKK 123

Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            L+R   D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    PF
Sbjct: 124 MLDRNFVDIIVATPGRLIDFVEQKEVWLDKIEFLVIDEADRLLDMGFIPSVKRIVRFSPF 183

Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTL+FSAT + ++  ++  +L  P  +E+     T   +E        +   K  L
Sbjct: 184 KEQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYV--VENKDKYKL 241

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ++L+ ++ +   +IF N++  V  L   L++ G+ V  + G I Q  R+K+L  FK+G
Sbjct: 242 LQEILR-EEPIDKVMIFANRRDQVRRLYDHLKRDGYKVGMLSGEIAQDKRLKMLDQFKQG 300

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +M+A+D+A RG+ +  V HV NF +P ++++Y+HRIGRTGRAG  G + + ++++D 
Sbjct: 301 KNNIMIATDVAGRGIHVDGVSHVINFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDA 360

Query: 355 KHIDAIEKLIEKKV 368
            ++  IEK I KK+
Sbjct: 361 FYLPEIEKAIGKKL 374


>gi|300118846|ref|ZP_07056566.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           cereus SJ1]
 gi|298723814|gb|EFI64536.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           cereus SJ1]
          Length = 481

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 132/362 (36%), Positives = 219/362 (60%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  LS +V  A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  ++  P  IE+     T + IEH       +  +K +LL+ +   +
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R  ++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE 
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEA 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|229156050|ref|ZP_04284149.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 4342]
 gi|228627371|gb|EEK84099.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 4342]
          Length = 454

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 142/364 (39%), Positives = 221/364 (60%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ + IP++L   D+ G A+TGTGKT +FVLP   
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLP--- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
           ILEK        + LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 63  ILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLQ 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ ++V +   T  TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMVQVQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGIAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|254491416|ref|ZP_05104595.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxidans
           DMS010]
 gi|224462894|gb|EEF79164.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxydans
           DMS010]
          Length = 402

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 149/366 (40%), Positives = 216/366 (59%), Gaps = 5/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   ++ A  D GY +PT IQ + IPL+L   DV   A TGTGKTA+FVLP+L
Sbjct: 1   MQFEDLMLDESLLLAASDKGYKEPTLIQQEAIPLLLAGEDVLACAATGTGKTAAFVLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L       R+P+ LIL PTRELA Q+       GK     +A++ GG    AQ   LE
Sbjct: 61  QKLLDEPNHGRLPKALILAPTRELAFQIQHVIHHLGKANQPHIAMVTGGQAPTAQLAYLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D++I TPGR+L+     +  ++ IE +VIDEADRMLDMG  P + N+ + +    QT
Sbjct: 121 NGCDIVIATPGRLLNLVENEQADLSEIEFVVIDEADRMLDMGQGPDVANVLATITTAFQT 180

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQL 238
            LFSAT+    ++  +   L N  RIEV+  +  A+ + +  ++A   ++  K ALL  +
Sbjct: 181 SLFSATLAGSGVELFANALLPNASRIEVDAANQYAQQVSQQVYLADNREH--KQALLAAV 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++  D  ++ +IFCN+K+    +   L+ Q  S   +HG+ +Q  R +    F++G ++ 
Sbjct: 239 IKQTDC-ESALIFCNKKERAEEVSAFLQSQNISAQVVHGDFNQADRRERTRKFRQGKVKA 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+P V HV N+DVP R + YIHR+GRTGRAG+ G A  LV   D K++ 
Sbjct: 298 LVATDVAARGLDLPQVSHVINYDVPFRGDIYIHRVGRTGRAGQTGTAVNLVEPHDHKNLQ 357

Query: 359 AIEKLI 364
            +E  I
Sbjct: 358 RVEHHI 363


>gi|323483414|ref|ZP_08088802.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum
           WAL-14163]
 gi|323403268|gb|EGA95578.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum
           WAL-14163]
          Length = 552

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 138/367 (37%), Positives = 226/367 (61%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L  K++ AV D G+   +PIQ ++IPL L+  D+ G AQTGTGKTA+F +P+L  
Sbjct: 6   FEDLNLDAKILRAVTDMGFEAASPIQGQSIPLELEGLDIIGQAQTGTGKTAAFGIPLL-- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
            +K   + +  + +IL PTRELA QV++   +  K  + + V  + GG     Q + L+ 
Sbjct: 64  -QKVDPKSKKLQAIILCPTRELAIQVSEEIRRLAKYMHGVKVLPIYGGQEIGRQIRSLKD 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+I TPGR++DH  R  L + ++  +V+DEAD ML+MGF+  ++ I S +P  RQT+
Sbjct: 123 GIQVIIGTPGRVMDHMRRKTLKLEHVHTVVLDEADEMLNMGFLEDMETILSELPEERQTV 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM   + ++++ F ++P+ ++V     T   +   +     +   K  ++ +LL  
Sbjct: 183 MFSATMPPAIAEIAKKFQKDPEIVKVVKKELTVPKVTQYYYEVKPK--TKVEVMCRLLDM 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D  K  I+FCN K+ V +L   L+ +G+    +HG++ Q  R +++++F+ G   +++A
Sbjct: 241 YDP-KLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDILIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR GKAF+LV   ++  +  I+
Sbjct: 300 TDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVVGREVYKLREIQ 359

Query: 362 KLIEKKV 368
           +  + K+
Sbjct: 360 RYCKTKI 366


>gi|31794389|ref|NP_856882.1| ATP-dependent RNA helicase RhlE [Mycobacterium bovis AF2122/97]
 gi|31619985|emb|CAD95329.1| PROBABLE ATP-DEPENDENT RNA HELICASE RHLE [Mycobacterium bovis
           AF2122/97]
          Length = 527

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 148/381 (38%), Positives = 217/381 (56%), Gaps = 22/381 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG   ++V A+ + G  +P  IQ  T+PL L   DV G A+TG GKT +F +P+L  
Sbjct: 12  FAKLGARDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQR 71

Query: 63  LEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGK--------------NYNLTVAL 105
           +  G   R     PR L++ PTREL  QV D+    GK                 L+V  
Sbjct: 72  ITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVS 131

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG P+E Q + L  GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P
Sbjct: 132 IYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLP 191

Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVA 223
            I+ I   +P  RQ++LFSATM D +  ++  F+  P  I    P S+A  +  E     
Sbjct: 192 DIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYR 251

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            +A    K  L+ ++LQ++D     +IF   K+    +   L ++GF+V A+HG++ Q +
Sbjct: 252 AHAL--DKVELVSRVLQARDRGAT-MIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLA 308

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R K L  F+ G I ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G
Sbjct: 309 REKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTG 368

Query: 344 KAFTLVAKEDIKHIDAIEKLI 364
            A TLV  +++     I++ +
Sbjct: 369 VAVTLVDWDELPRWSMIDQAL 389


>gi|87124726|ref|ZP_01080574.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917]
 gi|86167605|gb|EAQ68864.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917]
          Length = 603

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 147/398 (36%), Positives = 231/398 (58%), Gaps = 22/398 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G S  ++  +   GY  P+PIQ    P ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 45  FDGFGFSEALLRTLASKGYQAPSPIQRAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 104

Query: 63  LE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           L+ +G      P+ L+L PTRELA QVA++F+ Y   + +L V  + GG  F +Q   L+
Sbjct: 105 LQPEGPG----PQVLVLAPTRELAMQVAESFKAYAAGHPHLNVLAIYGGSDFRSQIHSLK 160

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR++DH  +G L  +++  LV+DEAD ML MGFI  ++ I   +P  RQ 
Sbjct: 161 RGVDVVVGTPGRVMDHMRQGTLNTSHLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQV 220

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLL 239
           +LFSATM  E++++S+ +L+ P  I + T    A  I + C      Q S K   L ++L
Sbjct: 221 VLFSATMPAEIRRLSKRYLREPAEITIKTQEKEARRIRQRCIT---LQNSHKLEALNRVL 277

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++  T +  IIF   K   + +  +LE  G  V  ++G++ Q  R + +   ++GT+ ++
Sbjct: 278 EAV-TGEGVIIFARTKAITLTVSENLEATGHDVAVLNGDVPQNQRERTVERLRKGTVNIL 336

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +G V N+D+P  +E Y+HRIGRTGRAGR G+A   V   + + ++ 
Sbjct: 337 VATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFVTPRERRFVNN 396

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           +E+   + ++           P++    A+ N AR +N
Sbjct: 397 LERATGQPIE-----------PMQIPSNAEINQARLDN 423


>gi|261251247|ref|ZP_05943821.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
 gi|260938120|gb|EEX94108.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
          Length = 419

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 149/388 (38%), Positives = 224/388 (57%), Gaps = 9/388 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGL   ++  +    +  PT +Q   IP VL+  DV   AQTGTGKTA+F LP++ 
Sbjct: 4   DFQSLGLCSTLLTTLEKLNFKLPTEVQKHAIPHVLEGQDVLAGAQTGTGKTAAFGLPIIQ 63

Query: 62  -ILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +LE    R         L+L PTRELA QV DN   Y ++  + V    GG     Q +
Sbjct: 64  RLLESETTRDIQSNDVLALVLVPTRELAQQVFDNITLYAQDTIIKVVTAYGGTSMNVQTR 123

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+LI TPGR+LDH     + +   + LV+DEADRMLDMGF+P I+ I       
Sbjct: 124 NLDQGCDILIATPGRLLDHLFCKNINLTKTQYLVLDEADRMLDMGFMPDIKRILKRCNEE 183

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+ FSAT    ++ ++   L  P  ++V   +STAET++           +K  LL  
Sbjct: 184 RQTMFFSATFDKRIKTIAYKMLSEPVEVQVTPSNSTAETVKQMVYP--VDKKRKAELLAY 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ S++  +  ++F   K+    L   L+  G    +I+G+  Q +R K L +FK G ++
Sbjct: 242 LIGSRN-WQQVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGQVR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++A+D+AARGLDI  +  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++   +
Sbjct: 301 ALIATDVAARGLDIQQLEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAVSLMSRDEEYLL 360

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLE 383
           +AIE+L++ K+  +WL G   SL   +E
Sbjct: 361 EAIERLLDGKLPQEWLEGFEPSLIEEVE 388


>gi|163749401|ref|ZP_02156649.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161330810|gb|EDQ01737.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 430

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 155/410 (37%), Positives = 226/410 (55%), Gaps = 11/410 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA L L+P ++ A+ + GY + T +Q + IP+ L   D+   A+TGTGKTASF LP+L
Sbjct: 1   MKFAALDLNPLLIDAIDECGYQQLTQVQSEVIPVALSGADLMACAETGTGKTASFALPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K        R LIL PTRELA QVA N  +YG+  +L    + GG     Q K L 
Sbjct: 61  ERLLKEEQEYPCLRGLILTPTRELAIQVAANITRYGQFTSLKTLAVYGGANMNPQRKALN 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGR+ D   +  L ++++  L+IDEADRMLDMGF+  I+ + SLV     T
Sbjct: 121 AGVDILVATPGRLFDFVGQHGLNLSDVTSLIIDEADRMLDMGFVRDIERVKSLVASQHVT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSAT +D+++ ++E  L +P+ I V    S A   +  ++       +K  LL +L+ 
Sbjct: 181 HFFSATYSDQVKLLAEKMLISPQWINVAQTRSAASVEQEVYL---VDKRRKAELLSELI- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  ++F   K++  +L   L   G      HG+  Q +R + L  FK G +++MV
Sbjct: 237 GRNNWQQVLVFATTKESAEHLNSELSLDGIKCGVFHGDRTQGARNRTLEEFKAGKLRVMV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V N ++P  AE+YIHRIGRTGRAG  G+A + V   D + +D I
Sbjct: 297 ATDVAARGIDIQALPLVINLELPYGAEDYIHRIGRTGRAGLTGRAISFVCPSDEEMLDEI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           E LIE K+  +      L  PL           R+   +      FDRRK
Sbjct: 357 ESLIELKLPRIVLPGYELGAPLPA-------RYRETQDVTTTKKKFDRRK 399


>gi|313148046|ref|ZP_07810239.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313136813|gb|EFR54173.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
          Length = 647

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 135/367 (36%), Positives = 226/367 (61%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++ 
Sbjct: 15  FEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI- 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
             +K   + R+P++L+L PTREL  Q+A +   Y K  + L V  + GG   ++Q + L+
Sbjct: 74  --QKINVKNRIPQSLVLCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 131

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  + +  +  +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 132 RGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTESINAILADVPQERNT 191

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+ ++S+N+L + K I +   + +   ++H     +A+   K A L++++ 
Sbjct: 192 LLFSATMSPEIARISKNYLHDAKEITIGRKNESTSNVKHVVYTVHAK--DKYAALKRIVD 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GI+FC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +Q++V
Sbjct: 250 YYPQI-YGIVFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNLQILV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 309 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 368

Query: 361 EKLIEKK 367
           E++I KK
Sbjct: 369 ERIIGKK 375


>gi|225445460|ref|XP_002285108.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 615

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 150/389 (38%), Positives = 218/389 (56%), Gaps = 21/389 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA++ L   +   +    YVKPTPIQ   IP+ +   D+   AQTG+GKTA+F  P++  
Sbjct: 135 FAEIHLGEGLNQNIRRCKYVKPTPIQRHAIPIAMAGRDLMACAQTGSGKTAAFCFPIICG 194

Query: 61  ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                L +G AR+  P  LIL PTREL+ Q+ +  +K+     L V +  GG P   Q +
Sbjct: 195 ILRNQLSRGGARLACPTALILSPTRELSCQIHEEAKKFSYKTGLKVVVAYGGAPISQQFR 254

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV--- 174
            LERG D+L+ TPGR++D   R ++ +  I+ L +DEADRMLDMGF P I+ I   +   
Sbjct: 255 NLERGVDILVATPGRLVDMIERARVSLRMIKYLALDEADRMLDMGFEPQIRKIVEQMDMP 314

Query: 175 -PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
            P  RQT+LFSAT  +E+Q+++ +FL N   + V    S+ + I       + + + K  
Sbjct: 315 PPGARQTMLFSATFPNEIQRLAADFLSNYIFLSVGRVGSSTDLIVQ--RVEFVEDTDKRY 372

Query: 234 LLQQLLQSQDTMKN------GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
            L  LLQSQ T +        ++F   K+ V  L   L   G +  AIHG+  Q  R + 
Sbjct: 373 HLMDLLQSQMTNRTPKKYALTLVFVETKRGVDALEQWLCMNGLAATAIHGDKVQMERERA 432

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L +FK G   +MVA+D+AARGLDIP V HV NFD+P   ++Y+HRIGRTGRAG+ G A  
Sbjct: 433 LKSFKSGATPIMVATDVAARGLDIPHVAHVINFDLPKAIDDYVHRIGRTGRAGKSGLATA 492

Query: 348 LVAKEDIKHIDAIEKLIEKK----VDWLN 372
                ++    ++ +L+++       WLN
Sbjct: 493 FFNDGNLSLAKSLVELMQESNQEVPSWLN 521


>gi|310824350|ref|YP_003956708.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|309397422|gb|ADO74881.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
          Length = 579

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 144/365 (39%), Positives = 217/365 (59%), Gaps = 12/365 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLS + + AV  A +  PTPIQ + IP  L   DV G A TGTGKTA+++LP++ 
Sbjct: 4   SFKSLGLSSESLDAVRRARFASPTPIQAQAIPPALAGRDVIGCAVTGTGKTAAYLLPLVE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L    A  R P  L+L PTREL  Q+A     +G+   LT A++ GG    AQ + L +
Sbjct: 64  RL----AGERGPVGLVLAPTRELVLQIAQEAAFFGEPRGLTQAVVTGGTDMGAQVEALRQ 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+ D    G   ++ + +LV+DEADR L+MGF+P +Q I + +P  RQTL
Sbjct: 120 RPTLVLATPGRLADLLKEGVANLSAVRMLVLDEADRTLEMGFMPELQQILAALPRERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSST--AETIEHCFVATYAQYSKKCALLQQLL 239
           LFSAT+   + + ++  L+ P R+EV TPS T  A  ++  +     + S+K  LL  LL
Sbjct: 180 LFSATLGHNVTRFAQEVLRKPVRVEV-TPSGTPAARAVQRLY---EVEASEKYPLLLSLL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++D +   ++F   ++    +   L++ G    AIH +  Q  R + L  F+ G  + +
Sbjct: 236 -AKDQLSV-LVFTRTRERAEKVQEVLKRAGHKTAAIHADRTQGQRRQALEGFRRGQYRCL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLD+ D+GHV NFD+P+  E+Y+HRIGRT RAG  G+A T V   D + + A
Sbjct: 294 VATDIASRGLDVEDIGHVINFDLPHAPEDYVHRIGRTARAGASGRASTFVTSRDEETVRA 353

Query: 360 IEKLI 364
           IE+++
Sbjct: 354 IERIV 358


>gi|148973902|ref|ZP_01811435.1| ATP-dependent RNA helicase DbpA [Vibrionales bacterium SWAT-3]
 gi|145965599|gb|EDK30847.1| ATP-dependent RNA helicase DbpA [Vibrionales bacterium SWAT-3]
          Length = 459

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 140/368 (38%), Positives = 224/368 (60%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ + L P+++  +   GY + TPIQ  ++P +L   DV G  +TG+GKTA+F L +L  
Sbjct: 6   FSSIALKPELLHTLDSLGYTEMTPIQALSLPTILNGKDVIGQGKTGSGKTAAFGLGVLQN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA       +  +N+ V  L GG+P   Q   LE 
Sbjct: 66  LRVKRFRVQ---SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH  +G++ ++ +  LV+DEADRML+MGF   +  +    P  RQTL
Sbjct: 123 GAHILVGTPGRILDHLEKGRIDLSELNTLVLDEADRMLEMGFQDALDAVIDAAPKERQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   +++ V++  ++NP+ ++V + +    +I+  F       ++  AL   LL  
Sbjct: 183 LFSATFPKQIKSVADRIMRNPEMVKVES-THDHSSIQQHFYKLEGSEARDDALELLLLHH 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ ++FCN KK V N+   L  +GFSV  +HG+++QR R + L  F   TI ++VA
Sbjct: 242 QP--ESAVVFCNTKKEVQNVTDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G A +  +++++  +  I+
Sbjct: 300 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAISFFSEKEMYRVAQID 359

Query: 362 KLIEKKVD 369
           + ++  ++
Sbjct: 360 EYMDMPIE 367


>gi|217974178|ref|YP_002358929.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217499313|gb|ACK47506.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 472

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 142/376 (37%), Positives = 222/376 (59%), Gaps = 15/376 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY + T +Q K IPL  +  D+   AQTGTGKTASF LP  
Sbjct: 1   MKFETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTASFALP-- 58

Query: 61  TILEKGRARVRMP--------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            +LEK  A             R L++ PTRELA QV +N +KY +   L    + GG   
Sbjct: 59  -VLEKLAAESLTSDSNDKPILRALVMTPTRELAIQVCENIQKYSQFLPLKTLAVYGGANM 117

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q K +E+G D+L+ TPGR+ D   + +L ++++  LVIDEADRMLDMGF+  I+ +  
Sbjct: 118 NPQRKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKR 177

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L+    QT+LFSAT +D +++++E  L  P+ + V   ++ +  ++  +        +K 
Sbjct: 178 LIAPQHQTMLFSATYSDAVKQLAEKMLNEPQWVNVADTTTASTVVQEVY---RVDKRRKA 234

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL +L+  ++  +  ++F + K++  +L   L+  G +    HG+  Q +R ++L  FK
Sbjct: 235 ELLSELV-GRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEEFK 293

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
              ++++VA+D+AARGLDI  +  V N ++P  AE+YIHRIGRTGRAG  G+A + V+  
Sbjct: 294 ASKLRVLVATDVAARGLDIHALPMVINLELPFLAEDYIHRIGRTGRAGLTGRAISFVSPS 353

Query: 353 DIKHIDAIEKLIEKKV 368
           D + +  IE LIE+K+
Sbjct: 354 DDEMLAEIEALIEQKL 369


>gi|294793457|ref|ZP_06758594.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 3_1_44]
 gi|294455027|gb|EFG23399.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 3_1_44]
          Length = 432

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 139/363 (38%), Positives = 220/363 (60%), Gaps = 6/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+  +++ A+   G  +PTPIQ ++IP+V + +DV   AQTGTGKT +F+LP   I
Sbjct: 4   FKSLGVCDELIIALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLP---I 60

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++    V   + LI+ PTREL  Q++D  ++ G   N+ +  LIGG   EAQ ++L R 
Sbjct: 61  LQRVHTDVHQEQVLIIAPTRELIKQISDEAKELGSILNVDILPLIGGKTIEAQLQQLGRR 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+LDH  RG L ++ I  +V+DEAD+ML MGF+P I+N+       RQ LL
Sbjct: 121 PQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLIGQTDANRQLLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ D+++ +++ ++  P  +       T E+I+        +  +K   L ++++  
Sbjct: 181 FSATIPDKIRNLAKAYMSKPISVTAEGKHITLESIDQRVYMMNPE--EKTQRLIKMIED- 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D     I+FCN+++  + L + L   G ++  +HG++ Q  R +IL +F +   Q++VA+
Sbjct: 238 DNPFLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HV+N+DVP   + YIHRIGRTGRAG  G A T    +D   +  IE+
Sbjct: 298 DIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGIAVTFATPQDEAWLRRIER 357

Query: 363 LIE 365
            I+
Sbjct: 358 AIQ 360


>gi|294631256|ref|ZP_06709816.1| ATP-dependent RNA helicase DeaD [Streptomyces sp. e14]
 gi|292834589|gb|EFF92938.1| ATP-dependent RNA helicase DeaD [Streptomyces sp. e14]
          Length = 960

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 145/390 (37%), Positives = 221/390 (56%), Gaps = 21/390 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F +LG+ P+   A+   G   P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L  
Sbjct: 61  FRELGILPETAEALEAVGITTPFPIQEMTLPVALTGTDVIGQAKTGTGKTLGFGLPLLER 120

Query: 61  -TI---LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            T+   +E GRA+       P+ L++ PTREL  QV ++    GK  N+ V  + GG  +
Sbjct: 121 VTVPADVEAGRAKPEALTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVVAIYGGRAY 180

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E Q + L+ G DV++ TPGR+LD   + KL + +++ LV+DEAD MLD+GF+P ++ I  
Sbjct: 181 EPQVEALKNGVDVVVGTPGRLLDLAGQKKLNLKHVKALVLDEADEMLDLGFLPDVEKIIG 240

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKK 231
           ++P  RQT+LFSATM   +  ++  ++  P  I    P     T+ +     Y A    K
Sbjct: 241 MLPAKRQTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANTTQFIYRAHNMDK 300

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             ++ ++LQ++      +IFC  K+   +L   L+++GF+  A+HG++ Q +R + L  F
Sbjct: 301 PEMVARILQAEG-RGLAMIFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAF 359

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAG  G A TLV  
Sbjct: 360 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLVDW 419

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           +DI     I K +         DL   +PP
Sbjct: 420 DDIPRWQLINKAL---------DLGFSDPP 440


>gi|229917498|ref|YP_002886144.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
 gi|229468927|gb|ACQ70699.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
          Length = 481

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 225/371 (60%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS ++  A+    Y  PT +Q + IP  L+R D+   AQTG+GKTA+F +P++ +
Sbjct: 6   FTDYRLSDEITRALGIMKYESPTEVQQQVIPRALEREDLVVKAQTGSGKTAAFGIPVIEL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    +   P+ L+L PTRELA QV ++    G+   +    + G  PF  Q ++L++ 
Sbjct: 66  IDWAENK---PQVLVLTPTRELAVQVREDMTNIGRFKRIKATAVYGKEPFSKQREELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++DH  R  L ++ IE L+IDEAD ML+ GF+  ++ I   +P  R T++
Sbjct: 123 THIVVGTPGRVMDHIERETLSLDRIEYLIIDEADEMLNRGFLADVEKILQQLPKDRVTMV 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT   +++++ +  +  P R+ + +   TA TIEH  +  +   ++K A+LQ +   +
Sbjct: 183 FSATFPQDIERLCQKHMNAPARVAIESTGMTASTIEHRLLPVH--RNEKLAVLQDITVVE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + +IFC  K+NV  +   L+K G+S   +HG ++Q  R  +++ FK G  + +VA+
Sbjct: 241 NP-DSCMIFCRTKENVDTVYAELDKAGYSAERLHGGLEQEDRFAVMNGFKMGNFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+D+ +V  V N+DVP   E+Y+HR GRTGRAG+ G A TL+ +++ + I AIE 
Sbjct: 300 DVAARGIDVDNVELVINYDVPVEKESYVHRTGRTGRAGKQGTAITLMTRQEERLIGAIES 359

Query: 363 LIEKKVDWLNG 373
            ++ ++  ++ 
Sbjct: 360 YVQFEIPMIDA 370


>gi|145294934|ref|YP_001137755.1| hypothetical protein cgR_0880 [Corynebacterium glutamicum R]
 gi|140844854|dbj|BAF53853.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 424

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 151/408 (37%), Positives = 222/408 (54%), Gaps = 22/408 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +LG++ ++  A+   G  +   IQ  T+P+ L  HD  G A+TG GKT  F +P+L  
Sbjct: 10  FTELGVAVEITDALEALGINRTFAIQEYTLPIALDGHDFIGQARTGMGKTYGFGVPLLDR 69

Query: 62  ILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + +          PR L++ PTRELA QV D+ ++   N  L +    GG P+E Q   L
Sbjct: 70  VFDSADVAETDGTPRALVIVPTRELAVQVGDDLQRAATNLPLKIFTFYGGTPYEEQIDAL 129

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G DV++ TPGR+LD   RG L ++ + ILV+DEAD MLD+GF+P I+ I   +    Q
Sbjct: 130 KVGVDVVVGTPGRLLDLHKRGALSLDKVAILVLDEADEMLDLGFLPDIEKILRALTHQHQ 189

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   +  ++ +FL  P  I   T  ++A       V   A    K A+  ++L
Sbjct: 190 TMLFSATMPGAILTLARSFLNKPVHIRAETSDASATHKTTKQVVFQAHKMDKEAITAKIL 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q++D  K  IIF   K+    +   L  +GFSV ++HG++ Q +R K L+ F+ G I ++
Sbjct: 250 QAKDRGKT-IIFARTKRTAAQVAEDLASRGFSVGSVHGDMGQPAREKSLNAFRTGKIDIL 308

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV HV N+  P+    Y+HRIGRTGRAG +G A TLV  ++      
Sbjct: 309 VATDVAARGIDVDDVTHVINYQTPDDPMTYVHRIGRTGRAGHNGTAVTLVGYDETLKWTV 368

Query: 360 IEKLIEKKVDWLNGDLSSLNPP---------LEKIDIAQHNHARKNNP 398
           I+  +E         L   NPP         LE +DI +    R   P
Sbjct: 369 IDNELE---------LGQPNPPQWFSTSPELLEALDIPEGVTERVGPP 407


>gi|124022674|ref|YP_001016981.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9303]
 gi|123962960|gb|ABM77716.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9303]
          Length = 636

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 139/373 (37%), Positives = 223/373 (59%), Gaps = 9/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F   G S  ++  + + GY +P+PIQ   IP ++   D+ G AQTGTGKTA+F LP++ 
Sbjct: 84  EFDCFGFSEPLLKTLAEKGYKQPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLIE 143

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+   +R   P+ L+L PTRELA QVAD+F  Y   + +L V  + GG  F +Q   L+
Sbjct: 144 RLQDHGSR---PQVLVLAPTRELAMQVADSFRAYAVGHPHLKVLAVYGGADFRSQINTLK 200

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR++DH  +G L  + +  LV+DEAD ML MGFI  ++ I   +P  RQ 
Sbjct: 201 RGVDVVVGTPGRLMDHMRQGTLDTSGLRCLVLDEADEMLRMGFIDDVEWILEQLPKERQM 260

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLL 239
           +LFSATM  E++++S+ +L  P  I + +    A  I + C      Q S K   L+++L
Sbjct: 261 VLFSATMPSEIRRLSKRYLHEPAEITIKSRDQEARLIRQRCITL---QNSHKLEALRRVL 317

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++  T +  IIF   K   + +  +LE  G  V  ++G++ Q  R + +   ++G++ ++
Sbjct: 318 EAF-TGEGVIIFARTKVITLTVAEALESAGHDVAVLNGDVPQNQRERTVERLRKGSVNIL 376

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +  V N+D+P  +E Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 377 VATDVAARGLDVDRISLVINYDIPFDSEAYVHRIGRTGRAGRSGEAILFVNPRERRFVGG 436

Query: 360 IEKLIEKKVDWLN 372
            E+ + + ++ ++
Sbjct: 437 FERAVGQPIEPMD 449


>gi|229161413|ref|ZP_04289395.1| ATP-dependent RNA helicase [Bacillus cereus R309803]
 gi|228622053|gb|EEK78897.1| ATP-dependent RNA helicase [Bacillus cereus R309803]
          Length = 454

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 138/364 (37%), Positives = 223/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ + IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 66  KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ ++V +   T  TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMVQVQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L   L+ +G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDDLKGRGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|311111789|ref|YP_003983011.1| DEAD-box RNA helicase [Rothia dentocariosa ATCC 17931]
 gi|310943283|gb|ADP39577.1| DEAD-box RNA helicase [Rothia dentocariosa ATCC 17931]
          Length = 580

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 144/397 (36%), Positives = 221/397 (55%), Gaps = 21/397 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD G+   +  A+   G V P PIQ  T+P+ L  HD+ G A+TGTGKT  F LP +  
Sbjct: 25  FADFGVRQDISDALAAVGIVSPFPIQEMTLPVALAGHDIIGQAKTGTGKTLGFGLPTIQR 84

Query: 63  LEKGR--------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           +  GR         +   P+ LIL PTRELA QV ++     K  N  VA L GG+P+E 
Sbjct: 85  V-VGRDDDQWGSLQKPGAPQALILVPTRELAIQVGNDLAVASKLRNARVATLYGGVPYEP 143

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++L +G +V++ TPGR++D +  G L +  ++ +V+DEAD MLD+GF+P ++ I   +
Sbjct: 144 QVEQLTKGLEVVVGTPGRLIDLYQHGALTLTQVKTVVLDEADEMLDLGFLPSVEKIMGYL 203

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCA 233
           P  RQT+LFSATM   +  ++  ++  P  I    P   A+T        Y   +  K  
Sbjct: 204 PTDRQTMLFSATMPGPVITMARKYMTKPMHISAADPEDHAKTKASIRQVVYRVHHMDKDE 263

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +L ++L++    +  +IF   K++   +   L  +GF+   +HG+++Q +R + L  F+ 
Sbjct: 264 MLGRILRAHGRGRT-VIFTKTKRDAARVADELIARGFAAAPLHGDLNQGAREQALRAFRN 322

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G + ++VA+D+AARG+D+ DV HV N  VP   + Y+HR GRTGRAG  G A T V  ED
Sbjct: 323 GKVDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGHEGTAVTFVDWED 382

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           I    A  +LI   +D        ++ P+E    ++H
Sbjct: 383 I----ARWRLINDALDL------GVSDPVETYSSSEH 409


>gi|255010251|ref|ZP_05282377.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
          Length = 636

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 135/367 (36%), Positives = 226/367 (61%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++ 
Sbjct: 4   FEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
             +K   + R+P++L+L PTREL  Q+A +   Y K  + L V  + GG   ++Q + L+
Sbjct: 63  --QKINVKNRIPQSLVLCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  + +  +  +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTESINAILADVPQERNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+ ++S+N+L + K I +   + +   ++H     +A+   K A L++++ 
Sbjct: 181 LLFSATMSPEIARISKNYLHDAKEITIGRKNESTSNVKHVVYTVHAK--DKYAALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GI+FC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +Q++V
Sbjct: 239 YYPQI-YGIVFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNLQILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357

Query: 361 EKLIEKK 367
           E++I KK
Sbjct: 358 ERIIGKK 364


>gi|114048723|ref|YP_739273.1| ATP-dependent RNA helicase SrmB [Shewanella sp. MR-7]
 gi|113890165|gb|ABI44216.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 420

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 140/368 (38%), Positives = 219/368 (59%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P ++ ++   G++ PT IQ +T+P  L++ D+   A TGTGKTASF+LP L
Sbjct: 1   MQFEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPAL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +++  R      R LIL PTRELA+Q+         +  L +A++ GG+P+  Q + L
Sbjct: 61  QHLIDFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   D+L+ TPGR++++ ++GK    +++IL+IDEADRMLDMGF   ++ I       +Q
Sbjct: 121 KGNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQ 180

Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            +LFSAT+    + + +   L +P  I+V+ P      I H ++        K ALL  L
Sbjct: 181 NMLFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKI-HQWIHLADDKDHKFALLCHL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ Q+ +K  I+F   +  V +L   L K G     + G+++Q+ R + LS F +G + +
Sbjct: 240 LK-QEEVKRAIVFVKTRDVVSSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI D+ HV NFD+P  A+ YIHRIGRTGRAG  G A +L    D++ + 
Sbjct: 299 LLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVG 358

Query: 359 AIEKLIEK 366
            IE+ IE+
Sbjct: 359 KIERYIEQ 366


>gi|261402374|ref|YP_003246598.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius
           M7]
 gi|261369367|gb|ACX72116.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius
           M7]
          Length = 404

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 138/373 (36%), Positives = 227/373 (60%), Gaps = 14/373 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59
           M+F +L LS   + AV + G+ KPT IQ K IPL L    ++   A+TG+GKTASF LP+
Sbjct: 6   MNFEELNLSENTLNAVRNKGFEKPTDIQTKVIPLFLNGEKNIVAQARTGSGKTASFALPL 65

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + ++ +G       + +IL PTRELA QVAD       N NL +  + GG P + Q K L
Sbjct: 66  IELINEGEG----IKAIILTPTRELAIQVADEINSLKGNKNLKIVKVYGGTPIQPQIKYL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            + A++++ TPGR+LDH NRG L + ++E  ++DEAD ML+MGFI  ++ I +     R+
Sbjct: 122 -KNANIVVGTPGRVLDHINRGTLNLKDVEYFILDEADEMLNMGFIDDVEKILNACNKNRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  E+  +++ ++ + + +     +     IE  F+      +K+   L ++L
Sbjct: 181 ILLFSATMPVEILNLAKKYMNDYEFVRAKRNAD----IEQTFIE--VDENKRFETLCRIL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++    G++FC  KK+  +L + L   GF   AIHG++ Q  R K++  FK+  I+++
Sbjct: 235 RDRNFY--GLVFCKTKKDTKDLANMLRDIGFKAGAIHGDLKQHQREKVVRLFKQKRIKIL 292

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+ +RG+D+ D+ HV N+ +P   E Y+HRIGRTGRAG+ GKA +++ +++ + +  
Sbjct: 293 IATDVMSRGIDVNDLSHVVNYHLPQTPEAYMHRIGRTGRAGKKGKAISIINRKEYRKLKH 352

Query: 360 IEKLIEKKVDWLN 372
           IE+ ++ K+   N
Sbjct: 353 IERTMKLKIKKYN 365


>gi|160874482|ref|YP_001553798.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|304409447|ref|ZP_07391067.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307303805|ref|ZP_07583558.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|160860004|gb|ABX48538.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|304351965|gb|EFM16363.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306912703|gb|EFN43126.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|315266720|gb|ADT93573.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 472

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 142/376 (37%), Positives = 222/376 (59%), Gaps = 15/376 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY + T +Q K IPL  +  D+   AQTGTGKTASF LP  
Sbjct: 1   MKFETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTASFALP-- 58

Query: 61  TILEKGRARVRMP--------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            +LEK  A             R L++ PTRELA QV +N +KY +   L    + GG   
Sbjct: 59  -VLEKLAAESLTSDSNDKPILRALVMTPTRELAIQVCENIQKYSQFLPLKTLAVYGGANM 117

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q K +E+G D+L+ TPGR+ D   + +L ++++  LVIDEADRMLDMGF+  I+ +  
Sbjct: 118 NPQRKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKR 177

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L+    QT+LFSAT +D +++++E  L  P+ + V   ++ +  ++  +        +K 
Sbjct: 178 LIAPQHQTMLFSATYSDAVKQLAEKMLNEPQWVNVADTTTASTVVQEVY---RVDKRRKA 234

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL +L+  ++  +  ++F + K++  +L   L+  G +    HG+  Q +R ++L  FK
Sbjct: 235 ELLSELV-GRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEEFK 293

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
              ++++VA+D+AARGLDI  +  V N ++P  AE+YIHRIGRTGRAG  G+A + V+  
Sbjct: 294 ASKLRVLVATDVAARGLDIHALPMVINLELPFLAEDYIHRIGRTGRAGLTGRAISFVSPS 353

Query: 353 DIKHIDAIEKLIEKKV 368
           D + +  IE LIE+K+
Sbjct: 354 DDEMLAEIEALIEQKL 369


>gi|165933600|ref|YP_001650389.1| ATP-dependent RNA helicase [Rickettsia rickettsii str. Iowa]
 gi|165908687|gb|ABY72983.1| ATP-dependent RNA helicase [Rickettsia rickettsii str. Iowa]
          Length = 414

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 219/370 (59%), Gaps = 15/370 (4%)

Query: 1   MDF--ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           MD+   +  LS +++ A+      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP
Sbjct: 1   MDYIMKNFNLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           ++    K +        LIL PTRELA Q+     K   +Y +  A+LIGG P   Q  +
Sbjct: 61  LIDSFIKNKTTA-----LILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQ 115

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG    ++ I   +P  R
Sbjct: 116 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 175

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQ 236
           Q L+FSATM   +  VS+ +L NP RI V   +  A  I  E   V+   ++S   AL +
Sbjct: 176 QVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFS---ALTK 232

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           QL   + ++   IIF   K++   L   L+ +  +  AIHG++ QR R +++ +F++   
Sbjct: 233 QLGHREGSV---IIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNH 289

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++MVA+D+AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +D+  
Sbjct: 290 RIMVATDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIR 349

Query: 357 IDAIEKLIEK 366
             AI++L+ K
Sbjct: 350 WRAIDRLVNK 359


>gi|312892436|ref|ZP_07751930.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311295070|gb|EFQ72245.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 615

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 136/375 (36%), Positives = 234/375 (62%), Gaps = 10/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F+ LG+   +V A+ D G+  PTPIQ ++IP++L   +D  G+AQTGTGKTA+F LP+L 
Sbjct: 4   FSQLGIRHDIVNAITDLGFENPTPIQEQSIPVLLTGSNDFVGLAQTGTGKTAAFGLPLLE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           +L+        P+ LIL PTREL  Q+ ++ + Y KN  N+ V  + GG     Q ++++
Sbjct: 64  LLD---FEQNHPQALILCPTRELCLQITNDLKNYSKNMSNVNVVAVYGGANISDQLRQIK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD  NR  +  +++  +V+DEAD ML+MGF   I +I S  P  ++T
Sbjct: 121 RGVQIVVATPGRMLDIINRKAINFSDVNYVVLDEADEMLNMGFQEDIDSILSTTPDDKKT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E++++++ ++ +P  + +   ++    IEH +    A+   K A  ++++ 
Sbjct: 181 WLFSATMPSEVRRIAKKYMTDPFELTMGEKNTGNVNIEHEYYIVRAR--DKYAAFKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GI+FC  K     +  +L K G++  ++HG++ Q+ R K++  ++E ++QL++
Sbjct: 239 FNPEIF-GIVFCRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRERSLQLLI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV HV N+ +P+  ENY HR GRT RAG+ G +  ++  +++  I  I
Sbjct: 298 ATDVAARGIDVNDVTHVINYSLPDEIENYTHRSGRTARAGKTGVSIAIINSKELGKIRQI 357

Query: 361 EKLIEKKVDWLNGDL 375
           E++I KK  ++ G++
Sbjct: 358 ERVIGKK--FIKGEI 370


>gi|229005142|ref|ZP_04162865.1| ATP-dependent RNA helicase [Bacillus mycoides Rock1-4]
 gi|228756117|gb|EEM05439.1| ATP-dependent RNA helicase [Bacillus mycoides Rock1-4]
          Length = 433

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 138/364 (37%), Positives = 223/364 (61%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+V+   D+ G A+TGTGKT +FVLP+L 
Sbjct: 3   NFLELGISETFNHTLRENGIAEATPIQEKAIPVVMAGKDIIGQAKTGTGKTLAFVLPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    EK      N+ V  + GG     Q +KL+
Sbjct: 63  KIDPESSDVQ---ALIVAPTRELALQITTEIEKMLVHQENINVLAIYGGQDVAQQMRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  ++++N+ +LV+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETPESKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ +++ P+ I++ +   T   I+   + T    +K+ AL   + +
Sbjct: 180 MLFSATMPKDIKKLAKRYMKEPEMIQIQSAEVTVNNIKQRVIET-TDRAKQDALRHVMDR 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   +IFC  K+    L   L+  G++   +HG++ Q  R +++ +F++  IQ ++
Sbjct: 239 DQPFL--AVIFCRTKRRASKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFRDAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D  ++  I
Sbjct: 297 ATDVAARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAPKDEMYLKEI 356

Query: 361 EKLI 364
           EK I
Sbjct: 357 EKGI 360


>gi|260904108|ref|ZP_05912430.1| DNA/RNA helicase, superfamily II [Brevibacterium linens BL2]
          Length = 489

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 159/446 (35%), Positives = 243/446 (54%), Gaps = 34/446 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA+LG++  +V A+   G   P PIQ  T+P+ L   D+ G A+TGTGKT  F +P+L 
Sbjct: 7   DFAELGVAGPIVAALAAKGITHPFPIQAMTLPVALSGADIIGQAKTGTGKTLGFGIPLLQ 66

Query: 62  IL----EKGRA---------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT 102
            +    E G A                 R+P+ L++ PTRELA QVA +        ++ 
Sbjct: 67  RVVGKNEDGAAPADPENTPEFVSDSTETRLPQALVVVPTRELAKQVAADLVTASTQRDID 126

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
           +  + GG+ F+ Q KKL+ G DV++ TPGR+LD + R  L ++ +  +V+DEAD MLD+G
Sbjct: 127 IMTIYGGMDFDPQIKKLKSGVDVVVGTPGRLLDLYGRKVLRLHKVRTVVLDEADEMLDLG 186

Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           F+P ++ I + VP  RQT+LFSATM   +  ++  ++  P  I  +     +   ++   
Sbjct: 187 FLPDVEKIINAVPAHRQTMLFSATMPGAVITLARRYMSRPTHIRAHDNEDLSLLGKNTEQ 246

Query: 223 ATYAQYS-KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
             Y  +S  K  L+ ++LQ++   +  IIF   K+    L   L  +GF V  +HG++ Q
Sbjct: 247 LVYRAHSMDKSELVARMLQAEGRGRT-IIFTRTKRTADKLAAELGDRGFQVKPLHGDLGQ 305

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
             R K L +F+EG + ++VA+D+AARG+DI DV HV N+  P+  + Y+HRIGRTGRAG 
Sbjct: 306 AQREKALKSFREGQVDVLVATDVAARGIDIDDVTHVVNYQCPDDEKTYVHRIGRTGRAGN 365

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            G A TLV  +D+     I K +      L+ D      P E    + H  A  +  IP+
Sbjct: 366 TGIAVTLVDWDDMPRWRLINKAL-----GLDHD-----EPAETYSTSPHFFA--DLSIPK 413

Query: 402 KSTGFDRRKKNYSSQKSHIPLKESEK 427
            + G  RR++   S   H   K+SE+
Sbjct: 414 GTKGRLRRQQTEESD-DHAGPKKSEQ 438


>gi|311032368|ref|ZP_07710458.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. m3-13]
          Length = 481

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 142/433 (32%), Positives = 246/433 (56%), Gaps = 32/433 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   +V A+    Y+KPT +Q + IP  L + D+   +QTG+GKTA+F +P+  +
Sbjct: 5   FQQFNLGEDIVKALKSLNYLKPTNVQEEVIPKALAKSDIIVKSQTGSGKTAAFAVPLCDL 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +     +   P+ L+L PTRELAAQV D+    G+   +    + G   F+ Q  +L++ 
Sbjct: 65  VHWEENK---PQALVLTPTRELAAQVKDDITNIGRYKRVKATAIYGKQSFQRQKLELKQK 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGR+LDH  +G L ++ +E LVIDEAD ML+MGFI  +++I  ++P +R T+L
Sbjct: 122 SHIVVGTPGRVLDHLEKGTLDVSRLEYLVIDEADEMLNMGFIDQVESIIQMLPKSRVTML 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  ++ NP  IE+ +   T + IEH +     +  KK  LL+ +   +
Sbjct: 182 FSATLPEDIKQLSNQYMTNPVFIEIESGGLTTDRIEHIWYEV-GEGEKKFLLLKDITVVE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + I+FC  ++ V  +  +L + G+    +HG + Q  R  +++ FK G  + ++A+
Sbjct: 241 NP-DSCIVFCATQEEVDKVHRNLHRAGYPCGKLHGGLVQEDRFSVMNAFKRGEFRYLIAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RG+DI D+  V N+D+P+  E ++HRIGRT RAG+ GKA TL++  +  H++ IE 
Sbjct: 300 DVASRGIDIEDISLVINYDIPSDKERFVHRIGRTARAGKSGKAITLISTSEHHHLEEIE- 358

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPL 422
                 D++   +S    P             K   + +  T F  + +N        P+
Sbjct: 359 ------DFIGIKISRAEAP-------------KREAVARAETSFLVKLENR-------PI 392

Query: 423 KESEKISKLQQDI 435
           K+  K +KL+Q+I
Sbjct: 393 KKENKGAKLEQNI 405


>gi|170720088|ref|YP_001747776.1| ATP-dependent RNA helicase RhlB [Pseudomonas putida W619]
 gi|169758091|gb|ACA71407.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 483

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 141/373 (37%), Positives = 224/373 (60%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS +++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ +++ 
Sbjct: 96  FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGKDAIGRAQTGTGKTAAFLISIISQ 155

Query: 63  LEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L++        +  PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K 
Sbjct: 156 LQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKT 215

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           LE R  D+L+ TPGR+LD   RG + ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 216 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 275

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT TD++  +++ +  +P  +E+   +  +ET+E    A     S K  LL
Sbjct: 276 SERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASETVEQHVFAVAG--SDKYKLL 333

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ +Q+  +  ++F N+K  V  +   L + G +   + G++ Q  R++ L +F+EG 
Sbjct: 334 YNLV-TQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGR 392

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 393 ITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSY 452

Query: 356 HIDAIEKLIEKKV 368
            + AIE+L+ +K+
Sbjct: 453 QLPAIEELLGRKI 465


>gi|320330567|gb|EFW86546.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330873565|gb|EGH07714.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 442

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 143/371 (38%), Positives = 218/371 (58%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               +E  +      R L+L PTRELA QV ++  +Y ++  L+     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G +VL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRKGVEVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A +++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVQQWVVTV--DKKRKADLFIHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++        ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVD 369
           AIE L  + ++
Sbjct: 358 AIEVLTRQTLE 368


>gi|152999859|ref|YP_001365540.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151364477|gb|ABS07477.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 472

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 142/376 (37%), Positives = 222/376 (59%), Gaps = 15/376 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY + T +Q K IPL  +  D+   AQTGTGKTASF LP  
Sbjct: 1   MKFETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTASFALP-- 58

Query: 61  TILEKGRARVRMP--------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            +LEK  A             R L++ PTRELA QV +N +KY +   L    + GG   
Sbjct: 59  -VLEKLAAESLTSDSNDKPILRALVMTPTRELAIQVCENIQKYSQFLPLKTLAVYGGANM 117

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q K +E+G D+L+ TPGR+ D   + +L ++++  LVIDEADRMLDMGF+  I+ +  
Sbjct: 118 NPQRKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKR 177

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L+    QT+LFSAT +D +++++E  L  P+ + V   ++ +  ++  +        +K 
Sbjct: 178 LIAPQHQTMLFSATYSDAVKQLAEKMLNEPQWVNVADTTTASTVVQEVY---RVDKRRKA 234

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL +L+  ++  +  ++F + K++  +L   L+  G +    HG+  Q +R ++L  FK
Sbjct: 235 ELLSELV-GRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEEFK 293

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
              ++++VA+D+AARGLDI  +  V N ++P  AE+YIHRIGRTGRAG  G+A + V+  
Sbjct: 294 ASKLRVLVATDVAARGLDIHALPMVINLELPFLAEDYIHRIGRTGRAGLTGRAISFVSPS 353

Query: 353 DIKHIDAIEKLIEKKV 368
           D + +  IE LIE+K+
Sbjct: 354 DDEMLAEIEALIEQKL 369


>gi|307564611|ref|ZP_07627147.1| putative ATP-dependent RNA helicase DeaD [Prevotella amnii CRIS
           21A-A]
 gi|307346681|gb|EFN91982.1| putative ATP-dependent RNA helicase DeaD [Prevotella amnii CRIS
           21A-A]
          Length = 613

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+S  +  A+ + G+  P P+Q + IP +L  R+DV  +AQTGTGKTA+F LP+L 
Sbjct: 4   FEELGVSEDIRKAIEEQGFEYPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++  R   +  + ++L PTREL  Q+AD+ + + K   +L +A + GG   EAQ K+L+
Sbjct: 64  RIDTSR---KETQAIVLSPTRELCLQIADDLKDFSKYIPHLHIAAVYGGTSIEAQIKELK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++D  +RGK  + N+  +V+DEAD ML+MGF   I  I S VP  R T
Sbjct: 121 RGVQIIVATPGRLIDLMHRGKAKLENVCNIVLDEADEMLNMGFQDSITEILSGVPEDRNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ ++++V++ +L + K I V + +  AE++ H +    A+   K   L++L+ 
Sbjct: 181 LLFSATMSKDVERVAKGYLHDYKEIVVGSRNEGAESVNHIYYMVNAK--DKYLALKRLVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   I+FC  K     +   L K G++  A+HG++ Q+ R   +  F+    Q++V
Sbjct: 239 FYPKI-YAIVFCRTKLETQEVADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHLTQILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++ HV N+ +P+  ENY HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVTELTHVINYGLPDDIENYTHRSGRTGRAGKKGTSIAIIHCREKYKVRNI 357

Query: 361 EKLIEKKVDWLNGDLSS 377
           E++I K  ++++G L S
Sbjct: 358 ERVIGK--EFVDGTLPS 372


>gi|258546120|ref|ZP_05706354.1| ATP-dependent RNA helicase RhlB [Cardiobacterium hominis ATCC
           15826]
 gi|258518545|gb|EEV87404.1| ATP-dependent RNA helicase RhlB [Cardiobacterium hominis ATCC
           15826]
          Length = 444

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 155/423 (36%), Positives = 237/423 (56%), Gaps = 16/423 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L + P +  A+ D      TPIQ KT+PL L  HDV G+AQTGTGKTA+F++ +   
Sbjct: 11  FSSLPIHPAIQEALEDNRLTHTTPIQEKTLPLTLGGHDVMGLAQTGTGKTAAFLISLYHY 70

Query: 63  LEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L       + + P  ++L PTRELA Q+  + ++ G    L    + GG+  E Q   LE
Sbjct: 71  LLTNPVHPKAKGPWAIVLAPTRELAVQIKKDADQIGAYTGLNSLAIYGGVSMEHQRNLLE 130

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FT 177
               D++I TPGRI+D + +  + + NIE+ V+DEADRM D+GFI  ++ +   +P    
Sbjct: 131 NAPIDIIIGTPGRIIDLYKQKIIRLKNIEVCVLDEADRMFDLGFIDDVRYLLRQMPPAHE 190

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R  LLFSATM  ++Q+++  +   P+ + + +  +TA+ I      T     +K  LL  
Sbjct: 191 RLNLLFSATMAQKVQELAYEYFNAPETVSIESGQATADNITQILYHTAKH--EKTPLLIG 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL ++D     +IF N K+++  L   LE  G+   A+ G+I Q+ R KI+ +F+ G + 
Sbjct: 249 LL-NRDKPARSMIFLNTKRDLERLSVVLEANGYPNAALSGDIPQKKREKIIKDFQSGAVN 307

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IPDV HVFN+D+P  AE+Y+HRIGRT RAG  G A +   +E +  +
Sbjct: 308 IVVATDVAARGLHIPDVTHVFNYDLPQVAEDYVHRIGRTARAGASGTAISFACEEYVYSL 367

Query: 358 DAIEKLIEKKVDWLNGD---LSSLNPPLEKIDIAQHNH-----ARKNNPIPQKSTGFDRR 409
             IE  I  K+     D   L+ + PP E+   A +       AR  N  P+ +     R
Sbjct: 368 PEIEHYIHNKLPVFPLDEELLADVIPPSEEALRALNEQKAERLARNGNRQPRGNKPESHR 427

Query: 410 KKN 412
           ++N
Sbjct: 428 RRN 430


>gi|253991618|ref|YP_003042974.1| ATP-dependent RNA helicase RhlB [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783068|emb|CAQ86233.1| ATP-dependent RNA helicase [Photorhabdus asymbiotica]
          Length = 428

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 157/422 (37%), Positives = 238/422 (56%), Gaps = 17/422 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKV+ A+ + G+   TPIQ  T+P  ++  DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVIEALDNKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKTLAFLASAFHY 70

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L      KGR +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 71  LLTHPIAKGR-QTNQPRALIMAPTRELAVQIYSDAEDLAQTTGLKMGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +G + +N ++++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYTKQGHINLNAVQVVVLDEADRMYDLGFIKDIRWLFRRMPSA 189

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234
             R  LLFSAT++  +++++   + + + +EV     T   I E  F   Y    +K  L
Sbjct: 190 NERMNLLFSATLSYRVRELAFEQMNHAEYVEVEPLQKTGHRIREELF---YPSNEEKMRL 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ LL+ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G
Sbjct: 247 LQTLLE-EEWPDRCIIFANTKHRCEDIWAHLAADGHRVGLLTGDVAQKKRLRILEEFSNG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E  
Sbjct: 306 NIDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYA 365

Query: 355 KHIDAIEKLIEKKVDW----LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            ++ AIE  I+ ++       N  L  L  P  +      NH R+NN   + +T  + RK
Sbjct: 366 LNLPAIEDYIQHQIPVSKYNSNALLKDLPVPKRRHRSRSGNHQRRNNLSHRNNTPRNNRK 425

Query: 411 KN 412
           ++
Sbjct: 426 RS 427


>gi|114046940|ref|YP_737490.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113888382|gb|ABI42433.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 427

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 147/369 (39%), Positives = 208/369 (56%), Gaps = 16/369 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+   +   + +  Y  PTPIQ  TIP VL   DV   A TG+GKTA+F +P+L 
Sbjct: 10  SFAELGIIAPLCNRLTELTYAAPTPIQAATIPAVLSGRDVLAGANTGSGKTAAFAVPLLQ 69

Query: 62  IL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113
            L      EK   +VR    L+L PTRELA QVAD+F  Y  ++N  L +    GG+   
Sbjct: 70  RLFEAKTAEKSAGQVR---CLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVN 126

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L  GADVL+ TPGR+LD      L +N +  LV+DEADRML +GF   +  +   
Sbjct: 127 LQMQSLRAGADVLVATPGRLLDLLASNALKLNRVLALVLDEADRMLSLGFTDELNQVLEA 186

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  +QTLL+SAT  +E++ ++   L  P  +E +  S    TIE   +       +K A
Sbjct: 187 LPAKKQTLLYSATFPEEVRALTAKLLHQP--LEYHLQSEQESTIEQRVITV--NREQKTA 242

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L++ Q      +IF + K    +L   L K+G S    HG+  Q +R ++L  FK 
Sbjct: 243 LLAHLIK-QHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKS 301

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I +++A+D+AARG+DI  +  V NFD+P    +Y+HRIGR+GRAG  G A TL++ E+
Sbjct: 302 GEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEE 361

Query: 354 IKHIDAIEK 362
             H   IEK
Sbjct: 362 YHHFGVIEK 370


>gi|196036086|ref|ZP_03103486.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|195991253|gb|EDX55221.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
          Length = 481

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 132/362 (36%), Positives = 219/362 (60%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  LS +V  A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFVRQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  ++  P  IE+     T + IEH       +  +K +LL+ +   +
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R  ++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE 
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEA 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|157963312|ref|YP_001503346.1| ATP-dependent RNA helicase DbpA [Shewanella pealeana ATCC 700345]
 gi|157848312|gb|ABV88811.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 469

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 146/367 (39%), Positives = 219/367 (59%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L  +++  +   GY   TPIQ +++P +L   DV G  +TG+GKTA+F L +L  
Sbjct: 14  FSSLKLKTELLDNLKTMGYDSMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLHK 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L+  R R++    L+L PTRELA QVA       +  +N+ V  L GG+P   Q   LE 
Sbjct: 74  LDVKRFRIQ---CLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEH 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG+L + N+  LV+DEADRML+MGF   ++ I   +P  RQTL
Sbjct: 131 GAHIIVGTPGRIIDHLDRGRLDLENVHTLVLDEADRMLEMGFQVELEGIMDRMPIERQTL 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  +++Q +++  +  P  ++V +  +T+ TIE  F        +  AL   LLQ 
Sbjct: 191 LFSATFPEQIQSIADKIMFKPVLVKVASTHATS-TIEQHFYEVGNNNDRMRALKLLLLQY 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   ++ ++FCN K+   ++   L+  GFSV A+HG+++QR R + L  F   ++ +MVA
Sbjct: 250 RP--ESAVVFCNTKRETKDVAAQLKNDGFSVVALHGDLEQRDRDQTLLQFANKSVSIMVA 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N+ V    E +IHRIGRTGRAG  G A T    ED   I  +E
Sbjct: 308 TDVAARGLDIDALDAVINYHVAYDTEVHIHRIGRTGRAGSKGSAHTFYNDEDGYKIALLE 367

Query: 362 KLIEKKV 368
             +E+ +
Sbjct: 368 DYLERDI 374


>gi|329939625|ref|ZP_08288926.1| putative ATP-dependent RNA helicase [Streptomyces griseoaurantiacus
           M045]
 gi|329301195|gb|EGG45090.1| putative ATP-dependent RNA helicase [Streptomyces griseoaurantiacus
           M045]
          Length = 848

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 138/373 (36%), Positives = 215/373 (57%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F +LG+ P+   A+   G + P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L  
Sbjct: 44  FRELGILPETAEALEAVGILNPFPIQEMTLPVALSGSDVIGQAKTGTGKTLGFGLPLLER 103

Query: 61  ----TILEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                 +E GRAR       P+ L++ PTREL  QV ++    GK  N+ V  + GG  +
Sbjct: 104 VSVPADVEAGRARPEDVTNTPQALVVVPTRELCVQVTNDLLTAGKVRNVRVTAIYGGRAY 163

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E Q + L++G DV++ TPGR+LD   + KL + ++  LV+DEAD MLD+GF+P ++ I  
Sbjct: 164 EPQVEALKKGVDVVVGTPGRLLDLAGQKKLNLAHVRCLVLDEADEMLDLGFLPDVEKIIG 223

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KK 231
           ++P  RQT+LFSATM   +  ++  ++  P  I   +P     T+ +     Y  +S  K
Sbjct: 224 MLPARRQTMLFSATMPGAVISLARRYMSQPTHIRATSPEGEGVTLANIKQFVYRAHSMDK 283

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             ++ ++LQ++      +IFC  K+   ++   L+++GF+  A+HG++ Q +R + L  F
Sbjct: 284 PEMIARILQAEG-RGLAMIFCRTKRTAADIAEQLQQRGFASGAVHGDLGQGAREQALRAF 342

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + Y+HR GRTGRAG  G A T V  
Sbjct: 343 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRTGRTGRAGASGTAITFVDW 402

Query: 352 EDIKHIDAIEKLI 364
           +DI     I K +
Sbjct: 403 DDIPRWQLINKAL 415


>gi|73996628|ref|XP_863206.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 11 [Canis familiaris]
          Length = 811

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 151/417 (36%), Positives = 229/417 (54%), Gaps = 42/417 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L+ 
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLSG 452

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E+     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q  +L  G
Sbjct: 453 IEES---DQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMG 509

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177
            +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P +     
Sbjct: 510 CEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPD 569

Query: 178 ---------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
                                RQT++F+ATM   +++++ ++L+ P  + + +     E 
Sbjct: 570 TDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHER 629

Query: 217 IEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK G++ C 
Sbjct: 630 VEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKMGYNACT 684

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHRIG
Sbjct: 685 LHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIG 744

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
           RTGRAG+ G A T + KED      +++ I      L   +SS  P L     AQH 
Sbjct: 745 RTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHK 795


>gi|229030176|ref|ZP_04186236.1| ATP-dependent RNA helicase [Bacillus cereus AH1271]
 gi|228731134|gb|EEL82056.1| ATP-dependent RNA helicase [Bacillus cereus AH1271]
          Length = 446

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 142/364 (39%), Positives = 221/364 (60%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ + IP+++   D+ G A+TGTGKT +FVLP   
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLP--- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
           ILEK        + LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 63  ILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T  TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGIAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|119773890|ref|YP_926630.1| ATP-dependent RNA helicase DbpA [Shewanella amazonensis SB2B]
 gi|119766390|gb|ABL98960.1| ATP-dependent RNA helicase DbpA [Shewanella amazonensis SB2B]
          Length = 467

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 221/371 (59%), Gaps = 11/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ L L  +++  +   GY + TPIQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 10  LAFSTLKLKTELLENLSSMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL 69

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             L+  R R++   TL+L PTRELA QVA       +  +N+ V  L GG+P   Q   L
Sbjct: 70  NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSL 126

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH  R +L ++N+ +LV+DEADRML+MGF P +  I +  P  RQ
Sbjct: 127 EHGAHIIVGTPGRIVDHLERDRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIARSPRERQ 186

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--Q 237
           TLLFSAT  +++Q +++  + NP  ++V T    +   +H +           A +Q  Q
Sbjct: 187 TLLFSATFPEQIQTIAQQVMYNPVMVKVATTHEKSTIAQHFY-----HLEDDGARMQALQ 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL  +   ++ ++FCN K+    +   L   GFSV A+HG+++QR R + L  F   +  
Sbjct: 242 LLLLEHKPESAVVFCNTKRETQKVADDLTAAGFSVLALHGDLEQRDRDETLLQFANKSAC 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  +  VFN+ V +  E +IHRIGRTGRAG  G A+T    +D   I
Sbjct: 302 VLVATDVAARGLDIDALDAVFNYHVAHDTEVHIHRIGRTGRAGSKGAAYTFFNDKDGYKI 361

Query: 358 DAIEKLIEKKV 368
             +E+ +E+ +
Sbjct: 362 ALLEEYLERDI 372


>gi|56461091|ref|YP_156372.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
 gi|56180101|gb|AAV82823.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 594

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 140/373 (37%), Positives = 227/373 (60%), Gaps = 9/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           + F D+ L P  V   L+A  ++ PTPIQ++ IP +L+  DV G AQTGTGKTA+F LP 
Sbjct: 8   LSFNDMAL-PSAVLEQLNAMQFLTPTPIQLQAIPALLEGQDVLGEAQTGTGKTAAFGLPA 66

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKK 118
           L  ++   A V+  + L++ PTRELA QVA+  E +  K   + VA + GG PF  Q K 
Sbjct: 67  LAKID---ASVKQTQVLVVTPTRELAIQVAEALEGFAAKMRGVGVATVYGGAPFGPQVKA 123

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G  +++ TPGR++D  N+  L ++ +++ V+DEAD ML+MGFI  I+ I   VP T 
Sbjct: 124 LKQGTAIVVGTPGRLIDLLNKNVLQLDGLKVGVLDEADEMLNMGFIEDIETILKAVPNTA 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q  LFSATM + ++K+++ FL++P  I++   +    TI+    A   Q   K   L +L
Sbjct: 184 QRALFSATMPNAIRKLAKTFLKDPLNIQIEAIAREKATIKQK--AWKVQGMTKMTALTRL 241

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+     +  +IF   +++ +++   L++ GF    + G+++Q  R + +S  + G I++
Sbjct: 242 LEV-TPYQRALIFVRTRQDTMDVAELLQRNGFKAAPLSGDLNQAQREQTVSQLRSGHIEI 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V +D+ ARGLD+P++ HV N+D+P+  E+Y+HRIGRTGRAGR G+A      ++   + 
Sbjct: 301 LVGTDVVARGLDVPEITHVINYDLPSDTESYVHRIGRTGRAGRTGEAILFFRAKERHLLR 360

Query: 359 AIEKLIEKKVDWL 371
             E+L    V++ 
Sbjct: 361 HYERLTNAPVEFF 373


>gi|47568574|ref|ZP_00239273.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|47554816|gb|EAL13168.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
          Length = 481

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 132/362 (36%), Positives = 219/362 (60%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  LS +V  A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  ++  P  IE+     T + IEH       +  +K +LL+ +   +
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L +  +    IHG + Q  R  ++++F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMNDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE 
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEERFLEEIEA 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|300727714|ref|ZP_07061100.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           bryantii B14]
 gi|299775002|gb|EFI71608.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           bryantii B14]
          Length = 555

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 142/374 (37%), Positives = 231/374 (61%), Gaps = 12/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  +   TPIQ KTIP +L  HDV G+AQTGTGKTA+++LP+L
Sbjct: 1   MRFENLDLNDNVLDALYDMRFDSCTPIQEKTIPEILNGHDVLGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL----TVALLIG--GIPFEA 114
           + L+ G         +++ PTRELA Q+    + +G  Y L    ++A+  G  G  ++ 
Sbjct: 61  SKLDDGGYPEGAINCVVMSPTRELAQQIDQAMQGFG--YYLQGVSSIAVYGGNDGNRYDQ 118

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           + K L+ GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I+ I   +
Sbjct: 119 EVKSLKLGADVVIATPGRLISHISLGNVDLSKVSFFILDEADRMLDMGFADDIKAIAKEL 178

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P T QT++FSATM ++++ +++  L+NP  I++   S  AE I+      Y   ++K  +
Sbjct: 179 PQTCQTIMFSATMPEKIEDLAKTLLKNPIEIKL-AVSKPAEKIKQSAYICYE--TQKLGI 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           ++ + ++ D +K  I+FC  K  V  +  +L+++  +   +H ++ Q  R  I+  FK G
Sbjct: 236 IKDIFKAGD-LKRVIVFCGSKTKVKQVNSALQRKHINSGEMHSDLTQEERNDIMYKFKAG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+ +RG+DI D+  V N+DVP+  E+Y+HRIGRT RA R G A TLV++ED 
Sbjct: 295 QLDVLVATDIVSRGIDIDDITMVINYDVPHDTEDYVHRIGRTARADRDGVAITLVSEEDQ 354

Query: 355 KHIDAIEKLIEKKV 368
            +    EK +EK++
Sbjct: 355 FYFQQTEKFLEKEI 368


>gi|72160918|ref|YP_288575.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Thermobifida fusca YX]
 gi|71914650|gb|AAZ54552.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Thermobifida fusca YX]
          Length = 503

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 135/355 (38%), Positives = 212/355 (59%), Gaps = 7/355 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+   +  A+   G V P PIQ   +PL L   D+ G A+TGTGKT +F LP+L  
Sbjct: 20  FRDLGVIDDIADALEAEGIVAPFPIQSMALPLALTGADIIGQARTGTGKTFAFGLPLLQR 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +       + PR L++ PTRELA QVA +     K  ++ +A + GG  +E Q   L +G
Sbjct: 80  VHTQPGSAKRPRALVVVPTRELAIQVAADLATASKRIDVRIATVYGGRAYEPQISALRKG 139

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+LD   +  L+++ +  LV+DEAD+MLD+GF+P I+ I +  P  RQT+L
Sbjct: 140 VDIVVGTPGRLLDLVKQRHLILSEVTALVLDEADKMLDLGFLPDIERILAKTPDQRQTML 199

Query: 183 FSATMTDELQKVSENFLQNPKRIEV-NTP--SSTAETIEHCFVATYAQYSKKCALLQQLL 239
           FSATM  E+  +S  +L+ P  I   + P  + + +  +H F         K  +L +LL
Sbjct: 200 FSATMPSEIVALSRKYLRRPTHIRAEDDPLDTGSGQVTQHVF---RTHPLDKLEMLARLL 256

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q+++     ++FC  K+   ++   L ++GF+  A+HG++ Q  R + L  F+ G + ++
Sbjct: 257 QARNRGLT-MVFCQTKRECHHVSTELCRRGFAAAAVHGDLGQGQRERALRAFRNGKVDVL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           VA+D+AARG+D+ DV HV N++ P+  + Y HRIGRTGRAGR G A T +  +++
Sbjct: 316 VATDVAARGIDVDDVTHVVNYECPDDEKTYTHRIGRTGRAGRSGTAVTFIDWQEL 370


>gi|324326484|gb|ADY21744.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 436

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 142/364 (39%), Positives = 221/364 (60%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ + IP++L   D+ G A+TGTGKT +FVLP   
Sbjct: 3   NFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLP--- 59

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
           ILEK        + LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 60  ILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T  TIE   + T    +K  AL  + + 
Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356

Query: 361 EKLI 364
           EK +
Sbjct: 357 EKTL 360


>gi|54302107|ref|YP_132100.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46915528|emb|CAG22300.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
          Length = 623

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 138/369 (37%), Positives = 221/369 (59%), Gaps = 6/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L L+  ++ A+   G+V PTPIQ  +IPL+L   D  G AQTGTGKTA+F LP+L 
Sbjct: 7   EFRQLDLADTLLSALDSMGFVSPTPIQAASIPLLLTGVDALGKAQTGTGKTAAFSLPVLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++  + +   P+ +++ PTRELA QVA   +  G+N   L V  + GG     Q + L+
Sbjct: 67  KVDLSQHK---PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRALK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ D  +R +L ++ +   V+DEAD ML MGF+  +  I    P + Q 
Sbjct: 124 NGAHIVVGTPGRVKDLISRDRLHLDEVSTFVLDEADEMLKMGFVDDVTWIMEQAPASAQR 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++++ + FL+NP+RI+V   + T   +   F     +  +K   + ++L+
Sbjct: 184 VLFSATMPPIVKQIVDRFLRNPERIDVAGENRTVSQVSQQF--WIVKGVEKDEAMIRMLE 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++ +   I+F   +++   L   L  +G    A+HG+I Q  R + + + K G I ++V
Sbjct: 242 TEENIDASIVFVRTRQDTERLADWLSARGCKAAALHGDIPQSLRERTVDHIKRGVIDVLV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLDI  + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  I
Sbjct: 302 ATDVVARGLDIQRITHVFNYDIPFDVESYIHRIGRTGRAGRSGKAILLVRTNQIRMLRTI 361

Query: 361 EKLIEKKVD 369
           E++ + +++
Sbjct: 362 ERVTKSRME 370


>gi|153002454|ref|YP_001368135.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS185]
 gi|160877173|ref|YP_001556489.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS195]
 gi|189040040|sp|A6WTD3|RHLB_SHEB8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040041|sp|A9L5D5|RHLB_SHEB9 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|151367072|gb|ABS10072.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|160862695|gb|ABX51229.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315269377|gb|ADT96230.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 438

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 147/384 (38%), Positives = 233/384 (60%), Gaps = 13/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FADL L P+V  A+ + G+   TPIQ  ++P++LQ  D+ G AQTGTGKT +F++     
Sbjct: 11  FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH 70

Query: 61  ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              T + +GR  +  PR +I+ PTRELA Q+A +     K+ +L V ++ GG  ++ Q K
Sbjct: 71  LLSTPVPEGRL-INQPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYGGESYDVQRK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+LI T GRI+D+  +G + +N+I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPEA 189

Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234
            Q L  LFSAT++ ++Q+++ + +  P ++E+     T++ I E  F   Y    +K  L
Sbjct: 190 NQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIF---YPSQEEKMRL 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L++ +D  +  I+F N K +   L   LE  G  V  + G++ Q+ R++IL  F  G
Sbjct: 247 LLTLIE-EDWPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG  G + +   +E  
Sbjct: 306 QLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFACEEYA 365

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL 378
            ++ AIE  I   +   N D  +L
Sbjct: 366 LNLPAIESYINHSIPVSNYDSEAL 389


>gi|113969711|ref|YP_733504.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113884395|gb|ABI38447.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 427

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 147/369 (39%), Positives = 208/369 (56%), Gaps = 16/369 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+   +   + +  Y  PTPIQ  TIP VL   DV   A TG+GKTA+F +P+L 
Sbjct: 10  SFAELGIIAPLCNRLTELTYAAPTPIQAATIPAVLSGRDVLAGANTGSGKTAAFAVPLLQ 69

Query: 62  IL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113
            L      EK   +VR    L+L PTRELA QVAD+F  Y  ++N  L +    GG+   
Sbjct: 70  RLFEAKTAEKSAGQVR---CLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVN 126

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L  GADVL+ TPGR+LD      L +N +  LV+DEADRML +GF   +  +   
Sbjct: 127 LQMQSLRAGADVLVATPGRLLDLLASNALKLNRVLALVLDEADRMLSLGFTDELNQVLEA 186

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  +QTLL+SAT  +E++ ++   L  P  +E +  S    TIE   +       +K A
Sbjct: 187 LPAKKQTLLYSATFPEEVRALTAKLLHQP--LEYHLQSEQESTIEQRVITV--NREQKTA 242

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L++ Q      +IF + K    +L   L K+G S    HG+  Q +R ++L  FK 
Sbjct: 243 LLAHLIK-QHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKS 301

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I +++A+D+AARG+DI  +  V NFD+P    +Y+HRIGR+GRAG  G A TL++ E+
Sbjct: 302 GDISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEE 361

Query: 354 IKHIDAIEK 362
             H   IEK
Sbjct: 362 YHHFGVIEK 370


>gi|254249351|ref|ZP_04942671.1| Superfamily II DNA and RNA helicase [Burkholderia cenocepacia
           PC184]
 gi|124875852|gb|EAY65842.1| Superfamily II DNA and RNA helicase [Burkholderia cenocepacia
           PC184]
          Length = 436

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 149/370 (40%), Positives = 217/370 (58%), Gaps = 14/370 (3%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84
           TPIQ  ++P+ L   D+   A+TG+GKTA+F L +L  L+   AR    + +IL PTREL
Sbjct: 2   TPIQAASLPVALAGQDLIAQAKTGSGKTAAFSLALLARLD---ARSFDVQAMILCPTREL 58

Query: 85  AAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           A QVA    +  +   N+ V  L GG P   Q + LE GA +++ TPGRI+DH +RG L 
Sbjct: 59  ADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPGRIMDHLDRGNLK 118

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           ++ +  LV+DEADRMLDMGF   I  +  + P TRQTLLFSAT  D + K+S+ FL+NPK
Sbjct: 119 LDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTLLFSATYPDGIAKLSQQFLRNPK 178

Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
            I++      ++  +  +  T     ++   + QLL     +   I FCN K+   +L  
Sbjct: 179 EIKLAERHDDSKIRQRFYEVT---EDERLHAVGQLLNHYRPVST-IAFCNTKQQCRDLLD 234

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
            L  QGF   A+HG +DQR R ++L  F   +  ++VA+D+AARGLDI  +  V N DV 
Sbjct: 235 VLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVT 294

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW------LNGDLSS 377
              E ++HRIGRTGRA + G A +LV+ +++  + AIE+  +++V+W         D S 
Sbjct: 295 PDPEVHVHRIGRTGRADQDGWALSLVSMDEMGRVGAIEQAQKREVEWHPLAELKPADDSV 354

Query: 378 LNPPLEKIDI 387
           L PP+E + I
Sbjct: 355 LLPPMETLQI 364


>gi|308051267|ref|YP_003914833.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307633457|gb|ADN77759.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 427

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 146/383 (38%), Positives = 227/383 (59%), Gaps = 11/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  L+P+VV A+  +G+   TPIQ  T+P+VL   D+ G AQTGTGKT +F++     
Sbjct: 11  FADFPLAPQVVEALESSGFTHCTPIQALTLPIVLSGKDIAGQAQTGTGKTLAFLVATFHE 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L K  A      + PR LI+ PTRELA Q+  + E   +   L + L  GG  +++Q   
Sbjct: 71  LLKQPAPEGHDGKSPRALIMAPTRELAIQIFKDAEPLSEATGLKLGLAYGGEGYDSQRAT 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-- 176
           LE G D+LI T GR++D++ +G   +N I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LEAGVDILIGTTGRLIDYYKQGTYKLNGIQVMVLDEADRMFDLGFIKDIRYLFRRMPAPA 190

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
            R+ +LFSAT++ ++Q+++   +  P+ ++V     T + I E  F   Y     K  LL
Sbjct: 191 ERRNMLFSATLSFKVQELAYEHMNEPEHVQVEPEQKTGKRIKEELF---YPSNDDKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++ +D     IIF N K    ++   +   G  V  + G++ Q+ R+KIL  FK G 
Sbjct: 248 LTLIE-EDWPDKAIIFANTKHRCEDIWAWMAGDGHRVGLLTGDVPQKKRVKILEQFKAGE 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +  +VA+D+AARGL I DV HVFN+D+P+ AE+Y+HRIGRTGRAG  G + +   ++   
Sbjct: 307 VDFLVATDVAARGLHIADVTHVFNYDLPDDAEDYVHRIGRTGRAGATGHSISFACEQYAL 366

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
           ++ AIE+ I  ++   + D ++L
Sbjct: 367 NLPAIEEYIGHQIPVSSYDATAL 389


>gi|329960668|ref|ZP_08299011.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
 gi|328532541|gb|EGF59335.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
          Length = 648

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 138/367 (37%), Positives = 227/367 (61%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+S ++  A+ + GY +P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++ 
Sbjct: 4   FEELGVSAEIRRAIEEMGYEQPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
             +K     R+P++LIL PTREL  Q+A +   Y K  + L V  + GG   E+Q + L+
Sbjct: 63  --QKINVNNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLRVLPVYGGSSIESQIRALK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  + ++ I+ +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILADVPQERNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+ ++S+ +L++ K I +   + +   ++H     +A+   K A L++++ 
Sbjct: 181 LLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVVFCVHAK--DKYAALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+V
Sbjct: 239 YNPQIY-GIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKLREI 357

Query: 361 EKLIEKK 367
           E++I KK
Sbjct: 358 ERIIGKK 364


>gi|126176118|ref|YP_001052267.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS155]
 gi|217975023|ref|YP_002359774.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS223]
 gi|304412472|ref|ZP_07394078.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307307131|ref|ZP_07586869.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|189040039|sp|A3D9I5|RHLB_SHEB5 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797691|sp|B8E670|RHLB_SHEB2 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|125999323|gb|ABN63398.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
 gi|217500158|gb|ACK48351.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
 gi|304349114|gb|EFM13526.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306910370|gb|EFN40801.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 438

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 147/384 (38%), Positives = 233/384 (60%), Gaps = 13/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FADL L P+V  A+ + G+   TPIQ  ++P++LQ  D+ G AQTGTGKT +F++     
Sbjct: 11  FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH 70

Query: 61  ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              T + +GR  +  PR +I+ PTRELA Q+A +     K+ +L V ++ GG  ++ Q K
Sbjct: 71  LLSTPVPEGRL-INQPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYGGESYDVQRK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+LI T GRI+D+  +G + +N+I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPEA 189

Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234
            Q L  LFSAT++ ++Q+++ + +  P ++E+     T++ I E  F   Y    +K  L
Sbjct: 190 NQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIF---YPSQEEKMRL 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L++ +D  +  I+F N K +   L   LE  G  V  + G++ Q+ R++IL  F  G
Sbjct: 247 LLTLIE-EDWPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG  G + +   +E  
Sbjct: 306 QLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFACEEYA 365

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL 378
            ++ AIE  I   +   N D  +L
Sbjct: 366 LNLPAIESYINHSIPVSNYDSEAL 389


>gi|229159014|ref|ZP_04287070.1| ATP-dependent RNA helicase dbpA [Bacillus cereus ATCC 4342]
 gi|228624433|gb|EEK81204.1| ATP-dependent RNA helicase dbpA [Bacillus cereus ATCC 4342]
          Length = 481

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 132/362 (36%), Positives = 218/362 (60%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  LS +V  A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  ++  P  IE+     T + IEH       +  +K +LL+ +   +
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L +  +    IHG + Q  R  ++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE 
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEERFLEEIEA 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|222096052|ref|YP_002530109.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
 gi|221240110|gb|ACM12820.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
          Length = 451

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 152/416 (36%), Positives = 238/416 (57%), Gaps = 28/416 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ + IP++L   D+ G A+TGTGKT +FVLP   
Sbjct: 3   NFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLP--- 59

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
           ILEK        + LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 60  ILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T  TIE   + T    +K  AL  + + 
Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN-------PIPQKSTGFDRR 409
           EK              +L  P+++  I Q    R +        P P+KS  + +R
Sbjct: 357 EK--------------TLGAPIQREIIEQPKIKRVDENGKPVPRPAPKKSGEYRQR 398


>gi|120597338|ref|YP_961912.1| ATP-dependent RNA helicase RhlB [Shewanella sp. W3-18-1]
 gi|146294517|ref|YP_001184941.1| ATP-dependent RNA helicase RhlB [Shewanella putrefaciens CN-32]
 gi|189040045|sp|A4YB09|RHLB_SHEPC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040084|sp|A1RFB3|RHLB_SHESW RecName: Full=ATP-dependent RNA helicase rhlB
 gi|120557431|gb|ABM23358.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145566207|gb|ABP77142.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
 gi|319427882|gb|ADV55956.1| ATP-dependent RNA helicase, RhlB [Shewanella putrefaciens 200]
          Length = 439

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 147/384 (38%), Positives = 233/384 (60%), Gaps = 13/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FADL L P+V  A+ + G+   TPIQ  ++P++LQ  D+ G AQTGTGKT +F++     
Sbjct: 11  FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH 70

Query: 61  ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              T + +GR ++  PR +I+ PTRELA Q+A +     K+  L V ++ GG  ++ Q K
Sbjct: 71  LLSTPIPEGR-QINQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+LI T GRI+D+  +G + +  I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLDQGVDILIGTTGRIIDYVRQGIISLTAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDA 189

Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234
            Q L  LFSAT++ ++Q+++ + + +P ++++     T++ I E  F   Y     K  L
Sbjct: 190 NQRLNMLFSATLSMKVQELAYDHMNDPVKVDIAPDEKTSKNIKEEVF---YPSQEDKMRL 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L++ +D  +  I+F N K +  NL   LE  G  V  + G++ Q+ R++IL  F  G
Sbjct: 247 LLTLIE-EDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG  G + +   +E  
Sbjct: 306 QLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFACEEYA 365

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL 378
            ++ AIE  I   +   N D S+L
Sbjct: 366 LNLPAIESYINHSIPVSNYDSSAL 389


>gi|118480482|ref|YP_897633.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|196045537|ref|ZP_03112768.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|225867435|ref|YP_002752813.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|229187683|ref|ZP_04314819.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BGSC 6E1]
 gi|118419707|gb|ABK88126.1| ATP-dependent RNA helicase DbpA [Bacillus thuringiensis str. Al
           Hakam]
 gi|196023744|gb|EDX62420.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|225790635|gb|ACO30852.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|228595751|gb|EEK53435.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BGSC 6E1]
          Length = 481

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 132/362 (36%), Positives = 218/362 (60%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  LS +V  A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  ++  P  IE+     T + IEH       +  +K +LL+ +   +
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L +  +    IHG + Q  R  ++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMEDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE 
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEA 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|294791601|ref|ZP_06756749.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 6_1_27]
 gi|294456831|gb|EFG25193.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 6_1_27]
          Length = 432

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 138/363 (38%), Positives = 220/363 (60%), Gaps = 6/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+  +++ A+   G  +PTPIQ ++IP+V + +DV   AQTGTGKT +F+LP   +
Sbjct: 4   FKSLGVCDELIQALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLP---V 60

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++    V   + LI+ PTREL  Q++D  ++ G   N+ +  LIGG   EAQ ++L R 
Sbjct: 61  LQRVHTDVHQEQVLIIAPTRELIKQISDEAKEIGSILNVDILPLIGGKTIEAQLQQLGRR 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+LDH  RG L ++ I  +V+DEAD+ML MGF+P I+N+       RQ LL
Sbjct: 121 PQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLIGQTDANRQLLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ D+++ +++ ++  P  +       T E+I+        +  +K   L ++++  
Sbjct: 181 FSATIPDKIRNLAKAYMSKPVSVTAEGKHITLESIDQRVYMMNPE--EKTQRLIKMIED- 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D     I+FCN+++  + L + L   G ++  +HG++ Q  R +IL +F +   Q++VA+
Sbjct: 238 DNPFLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HV+N+DVP   + YIHRIGRTGRAG  G A T    +D   +  IE+
Sbjct: 298 DIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGVAVTFATPQDESWLRRIER 357

Query: 363 LIE 365
            I+
Sbjct: 358 AIQ 360


>gi|149187764|ref|ZP_01866061.1| ATP-dependent RNA helicase [Vibrio shilonii AK1]
 gi|148838644|gb|EDL55584.1| ATP-dependent RNA helicase [Vibrio shilonii AK1]
          Length = 430

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 140/359 (38%), Positives = 219/359 (61%), Gaps = 9/359 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEKGRAR---VRMPRTL 76
           Y  PTPIQ + IP VL   D+   AQTGTGKTA+F LP++  I ++ + R    ++ R+L
Sbjct: 34  YESPTPIQARAIPYVLDGKDILAGAQTGTGKTAAFGLPLIHKIAQEPKVRESNSKVIRSL 93

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           +L PTRELA QV D+     K+  L V +  GG     Q K L  GAD+L+ TPGR+LDH
Sbjct: 94  VLTPTRELAQQVFDSLVPLAKDTGLKVVVAYGGTSMGVQTKNLVGGADILVATPGRLLDH 153

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
            +   + ++  E L++DEADRMLDMGF+P +  I   +P  RQ ++FSAT    ++ ++ 
Sbjct: 154 QHNRNITLSECEYLILDEADRMLDMGFMPDLNRILKRLPKERQNMMFSATFEQRIKTLAH 213

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
             +  P  ++V   +STA+T++           +K  LL  L+ S++  +  ++F   K+
Sbjct: 214 RIMNEPIEVQVTPANSTADTVKQMVYPV--DKKRKHELLAYLIGSRN-WQQVLVFTKTKQ 270

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
               L   L+  G +  +I+G+  Q +R K L +FK G ++ ++A+D+AARGLDI  +  
Sbjct: 271 GSDALAKELKLDGINAVSINGDKSQGARQKALDDFKSGKVRALIATDVAARGLDIQQLEQ 330

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV--DWLNG 373
           V NF++P +AE+YIHRIGRTGRAG  G A +L++ ++   ++AIE+L++ ++  +WL G
Sbjct: 331 VVNFELPYKAEDYIHRIGRTGRAGHAGFAVSLMSHDEQYLLEAIERLLDTRLPQEWLAG 389


>gi|290994831|ref|XP_002680035.1| ATP-dependent RNA helicase [Naegleria gruberi]
 gi|284093654|gb|EFC47291.1| ATP-dependent RNA helicase [Naegleria gruberi]
          Length = 629

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 147/381 (38%), Positives = 219/381 (57%), Gaps = 21/381 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L PK++  +  AG+ KPTP+Q  +IP+VL   D+   AQTG+GKT +F+ P+++ 
Sbjct: 154 FKEANLPPKLMQNIERAGFGKPTPVQKHSIPIVLAGRDLLSCAQTGSGKTCAFLFPIISN 213

Query: 63  L-------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
           L             E     V  P  LI+ PTREL+ Q+ D   K+  +      +  GG
Sbjct: 214 LMTQPGYETVMPHPELMDTLVTCPSVLIMAPTRELSTQIYDESRKFTYHTGRRTVVAYGG 273

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
              + Q K+LERG D+L+ TPGR++D  +RG + ++N++ LV+DEADRMLDMGF P I+ 
Sbjct: 274 AAIQYQLKQLERGCDILVATPGRLVDLIDRGSISLHNVQYLVLDEADRMLDMGFEPQIRY 333

Query: 170 ITSLV----PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I        P  R TL+FSAT    +Q ++ +FL N   + V    ST E I   FV  Y
Sbjct: 334 IVEKTGMPAPGQRITLMFSATFPKNIQTLARDFLHNNLNLTVGRVGSTHENILQKFV--Y 391

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            +  +K  L+ + + S +T+   ++F   KK    L + L K GF   +IHG+  QR R 
Sbjct: 392 CKDDEKRDLMLEAIASVETLT--LVFVKTKKEASILEYFLMKNGFKSSSIHGDKTQRERE 449

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L NF+ G   ++VA+D+A+RGLDI DVGHV N+D+P   E+Y+HRIGRTGRAG  G +
Sbjct: 450 TALENFRRGITPILVATDVASRGLDINDVGHVINYDLPENIEDYVHRIGRTGRAGNTGIS 509

Query: 346 FTLVAKEDIKHIDAIEKLIEK 366
            +    ++ +  D +  ++E+
Sbjct: 510 TSFFTDKNNQIADDLITVLEE 530


>gi|303328313|ref|ZP_07358751.1| RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
 gi|302861643|gb|EFL84579.1| RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
          Length = 593

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 142/362 (39%), Positives = 220/362 (60%), Gaps = 13/362 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ AV D G+ +P+PIQ+  +P +L   D  G AQTGTGKTA+F LP+L  
Sbjct: 5   FEELGLSQDLLDAVKDMGFEEPSPIQVLAVPALLAGRDAVGQAQTGTGKTAAFGLPILEK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121
           +  G+      + L+L PTRELA QVA+   K   +   +T+  + GG   E Q + L +
Sbjct: 65  VISGKG----VQALVLCPTRELAIQVAEELSKLAARKKGVTILPVYGGQLIERQFRALAK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH  RG L ++ ++++V+DEAD MLDMGF   I+ I    P   Q +
Sbjct: 121 GAQVVVGTPGRIIDHLQRGTLRLDEVDVVVLDEADEMLDMGFREDIEAILERTPDGCQRI 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           LFSATM   ++++S+ FL+ P+ + +     T   IE  +  V  Y +    C    ++L
Sbjct: 181 LFSATMPPPIRELSKRFLREPEMLTIAHKMLTIPAIEQTYYEVRPYQKMDALC----RVL 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            SQ   +  ++FC+ K+ V  +   L+++G+    +HG++ Q  R +++  F+   ++++
Sbjct: 237 DSQG-FRKALVFCSTKRGVDEVTTHLQQRGYQSDGLHGDLAQAQRDRVMQRFRTEGLEIL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           VA+D+AARG+D+ DV  V N+D+P+  E Y+HR+GRTGRAGR G AFT V  +E  K  D
Sbjct: 296 VATDVAARGIDVDDVDAVINYDMPHDVEKYVHRVGRTGRAGRVGSAFTFVTMREQYKLRD 355

Query: 359 AI 360
            I
Sbjct: 356 II 357


>gi|170724880|ref|YP_001758906.1| ATP-dependent RNA helicase RhlB [Shewanella woodyi ATCC 51908]
 gi|226739552|sp|B1KQF6|RHLB_SHEWM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|169810227|gb|ACA84811.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 441

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 150/408 (36%), Positives = 248/408 (60%), Gaps = 17/408 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FAD  L+ ++  A+ ++G+   TPIQ  ++P++LQ+ D+ G AQTGTGKT +F++     
Sbjct: 11  FADFSLNKEIKTALNESGFEFCTPIQALSLPILLQKKDIAGQAQTGTGKTLAFLVATFDH 70

Query: 61  ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              T + +GR ++  PR +I+ PTRELA Q+A +     K+  L V ++ GG  ++ Q K
Sbjct: 71  LLSTPVPEGR-QLNQPRAMIMAPTRELAIQIAKDATLLAKHTGLKVGIVYGGESYDVQRK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
            L++G D+LI T GRI+D+  +G + ++ I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLDKGVDILIGTTGRIIDYVRQGIINLSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDA 189

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234
            +R  +LFSAT++ ++Q+++ + +  P+++ +     T++ I E  F   Y    +K  L
Sbjct: 190 KSRLNMLFSATLSMKVQELAYDHMNEPEKVVIAPNEKTSKNIKEEIF---YPSMDEKMRL 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L++ +D  +  I+F N K +  N+   LE  G  V  + G++ Q+ R++IL  F EG
Sbjct: 247 LLSLIE-EDWPEKAIVFSNTKHSCENVWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTEG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG+ G + +   +E  
Sbjct: 306 KLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGVSVSFACEEYA 365

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
            ++ AIE+ I   +   N D   L   L+ I      H RK+N  PQ+
Sbjct: 366 LNLPAIEEYITHSIPVTNYDSEGL---LDDIPAPIRVH-RKHNNRPQQ 409


>gi|49480463|ref|YP_039444.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49332019|gb|AAT62665.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 481

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 132/362 (36%), Positives = 219/362 (60%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  LS +V  A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  ++  P  IE+     T + IEH       +  +K +LL+ +   +
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L +  +    IHG + Q +R  ++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLNRVNYPCDKIHGGMVQENRFGVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE 
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEA 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|254166522|ref|ZP_04873376.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|289596178|ref|YP_003482874.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|197624132|gb|EDY36693.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|289533965|gb|ADD08312.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
          Length = 451

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 141/368 (38%), Positives = 216/368 (58%), Gaps = 11/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ +S     A+ +  +V+PT +Q K IPL ++  D+   ++TG+GKT +F++P+ 
Sbjct: 4   LKFEDMSISKGTKNALKEHNFVEPTEVQEKAIPLAIKGRDLIVQSKTGSGKTLAFLIPIF 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  G         ++L PTRELA QV       GK +     ++ GG P E Q   L 
Sbjct: 64  ENLNSG------LEAIVLVPTRELAQQVERVARSIGKAHGKRTVVIYGGAPMERQIAGL- 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA ++I TPGR++D   RG L +N I   V+DEADRMLDMGFI  I+ I    P  +Q 
Sbjct: 117 KGASMVIGTPGRVMDLMRRGYLNLNGIRFFVLDEADRMLDMGFIDDIKWILQKTPKDKQM 176

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  E+  ++  +++NP++I ++    TAE +   +V        K A L  LL 
Sbjct: 177 MLFSATMPPEIISLARRYMKNPEKIILSEDEITAENVAQYYVEV--GEINKIAKLSSLLI 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+      +IFCN ++   N+   L+K GF   A+HG++ Q +R + +  FK+G I ++V
Sbjct: 235 SERG--KYLIFCNTRRKTKNIAEILQKYGFKAFALHGDMRQATRTRTMDAFKQGKIDILV 292

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D+AARG+D+  + HV N+DVP   ++Y+HRIGRTGR   HGKA T V +ED ++   I
Sbjct: 293 STDVAARGIDVHGITHVVNYDVPLYPKDYVHRIGRTGRMDAHGKAITFVTREDKEYFRRI 352

Query: 361 EKLIEKKV 368
           E  I K++
Sbjct: 353 EDFIGKRI 360


>gi|254168903|ref|ZP_04875743.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|197622167|gb|EDY34742.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
          Length = 451

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 144/386 (37%), Positives = 225/386 (58%), Gaps = 13/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ +S     A+ +  +V+PT +Q K IPL ++  D+   ++TG+GKT +F++P+ 
Sbjct: 4   LKFEDMSISKGTKNALKEHNFVEPTEVQEKAIPLAIKGRDLIVQSKTGSGKTLAFLIPIF 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  G         ++L PTRELA QV       GK +     ++ GG P E Q   L 
Sbjct: 64  ENLNSG------LEAIVLVPTRELAQQVERVARSIGKAHGKRTVVIYGGAPMERQIAGL- 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA ++I TPGR++D   RG L +N I   V+DEADRMLDMGFI  I+ I    P  +Q 
Sbjct: 117 KGASMVIGTPGRVMDLMRRGYLNLNGIRFFVLDEADRMLDMGFIDDIKWILQKTPKDKQM 176

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  E+  ++  +++NP++I ++    TAE +   +V        K A L  LL 
Sbjct: 177 MLFSATMPPEIISLARRYMKNPEKIILSEDEITAENVAQYYVEV--GEINKIAKLSSLLI 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+      +IFCN ++   N+   L+K GF   A+HG++ Q +R + +  FK+G I ++V
Sbjct: 235 SERG--KYLIFCNTRRKTKNIAEILQKYGFKAFALHGDMRQATRTRTMDAFKQGKIDILV 292

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D+AARG+D+  + HV N+DVP   ++Y+HRIGRTGR   HGKA T V +ED ++   I
Sbjct: 293 STDVAARGIDVHGITHVVNYDVPLYPKDYVHRIGRTGRMDAHGKAITFVTREDKEYFRRI 352

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKID 386
           E  I K++  +  ++ ++    E+ID
Sbjct: 353 EDFIGKRIPKM--EIKNVGKIKERID 376


>gi|332881684|ref|ZP_08449332.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332680323|gb|EGJ53272.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 679

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 226/377 (59%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+S ++  A+ + GY  P P+Q + IP +L   +DV  +AQTGTGKTA++ LP   
Sbjct: 4   FEELGVSAEIRQAIEEMGYENPMPVQEEVIPYLLGVNNDVVALAQTGTGKTAAYGLP--- 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           +L+K  A   + + LIL PTREL  Q+AD+ E Y K    + V  + GG   E Q + L 
Sbjct: 61  VLQKVDATRNVTQALILSPTRELCLQIADDLENYSKYLPGVRVLPVYGGANIEPQIRTLR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR++D   RG   + ++E +V+DEAD ML MGF   I  I + VP    T
Sbjct: 121 KGVQVIVATPGRLIDLMERGAASLEHVENVVLDEADEMLSMGFTESIDKILAGVPENHNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E++++S+ +L+  K I V + +  AET+ H +   +A+   K   L++++ 
Sbjct: 181 LLFSATMSREIERISKKYLREAKEIVVGSRNEGAETVNHVYYMVHAK--DKYLALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   IIFC  +     +   L + G++  ++HG++ Q+ R   +  F++  +Q +V
Sbjct: 239 YYPKI-YAIIFCRTRMETQEVADKLIQDGYNADSLHGDLSQQQRDLTMQKFRQHRVQFLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  ENY HR GRTGRAG+ G +  +V   +   I  I
Sbjct: 298 ATDVAARGLDVEDLTHVINYGMPDDIENYTHRSGRTGRAGKKGTSICIVHTRERSKIREI 357

Query: 361 EKLIEKKVDWLNGDLSS 377
           EK+I K  +++ G++ S
Sbjct: 358 EKVIGK--EFVKGEMPS 372


>gi|269119742|ref|YP_003307919.1| DEAD/DEAH box helicase [Sebaldella termitidis ATCC 33386]
 gi|268613620|gb|ACZ07988.1| DEAD/DEAH box helicase domain protein [Sebaldella termitidis ATCC
           33386]
          Length = 530

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 145/362 (40%), Positives = 216/362 (59%), Gaps = 8/362 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIP-LVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG+S   + A+   G+  P+ IQ   IP L+ +R ++ G AQTGTGKTA+F +P+L 
Sbjct: 6   FLDLGVSEATLKALDKKGFTSPSAIQTLVIPELLKERTNLIGQAQTGTGKTAAFAIPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+   +     R ++L PTRELA QVAD          + V  + GG   + Q KK+++
Sbjct: 66  TLDCDGS----VRAIVLAPTRELANQVADEMYSLRGKKEIKVLPVYGGQSIDQQIKKIKK 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGRILD  NR  + +NN+E  V+DEAD ML+MGFI  I+ I       ++ L
Sbjct: 122 GIDVIVGTPGRILDLMNRKVIKLNNLEYFVLDEADEMLNMGFIEDIELILERTNEDKKML 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT+ D + K+++ F+++ K ++V T   T    E  +     +  K  AL + L   
Sbjct: 182 FFSATIPDSIMKIAKKFMKDYKLLKVKTKELTTNLTEQIYFEV-TEGDKFEALCRVLDYV 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D    GI+FC  K +V ++   L+ +G+   AIHG+I Q  RMK L +FK+  I ++VA
Sbjct: 241 HDFY--GIVFCRTKSDVDDVAQHLKGRGYDAEAIHGDITQAMRMKTLEDFKKKRINILVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T V  ++   I  I+
Sbjct: 299 TDVAARGIDVNDLTHVINYSIPQEPESYVHRIGRTGRAGKKGIAITFVTPKEASKISKIQ 358

Query: 362 KL 363
           +L
Sbjct: 359 RL 360


>gi|73996624|ref|XP_863165.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 9 [Canis familiaris]
          Length = 811

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 151/417 (36%), Positives = 228/417 (54%), Gaps = 42/417 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVK 452

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E+     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q  +L  G
Sbjct: 453 IEES---DQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMG 509

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177
            +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P +     
Sbjct: 510 CEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPD 569

Query: 178 ---------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
                                RQT++F+ATM   +++++ ++L+ P  + + +     E 
Sbjct: 570 TDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHER 629

Query: 217 IEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK G++ C 
Sbjct: 630 VEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKMGYNACT 684

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHRIG
Sbjct: 685 LHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIG 744

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
           RTGRAG+ G A T + KED      +++ I      L   +SS  P L     AQH 
Sbjct: 745 RTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHK 795


>gi|149187557|ref|ZP_01865854.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1]
 gi|148838437|gb|EDL55377.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1]
          Length = 416

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 146/367 (39%), Positives = 222/367 (60%), Gaps = 13/367 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADLGL P +V  + +  Y +PTPIQ  TIP +L+  D+ G A TG+GKTA+F LP+L  
Sbjct: 10  FADLGLIPTLVERLEELEYSQPTPIQSHTIPYLLEGRDLVGGANTGSGKTAAFSLPILQK 69

Query: 62  ILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYG---KNYNLTVALLIGGIPFEAQ 115
           I ++ +   R   T   LIL PTRELA+QVA N + Y    +N   TVA+  GG+    Q
Sbjct: 70  ICQQDKPNSRRGNTVSHLILVPTRELASQVAYNVKSYSYHLRNEIKTVAVF-GGVSANPQ 128

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G+D+++ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  I +L+P
Sbjct: 129 MLALRGGSDIVVATPGRLLDLVSSNAIKLDQVQTLVLDEADRMLSLGFTEELNKILALLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +QTLLFSAT  +++  ++++ L NP  +++ + + T+  ++  F     Q   K A+L
Sbjct: 189 EKKQTLLFSATFPEKVTSLAQHLLSNPVEVQLQS-AETSTLVQRVFSVNKGQ---KTAVL 244

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++ Q   +  +IF N K +  +L   L K+G +    HG+  Q +R ++L  FK G 
Sbjct: 245 AHLIK-QHQWRQALIFVNAKNSCNHLAQKLSKRGITAEVFHGDKGQGARTRVLEGFKSGD 303

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           IQ+++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G   +L+  +D  
Sbjct: 304 IQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDDYH 363

Query: 356 HIDAIEK 362
           H   IEK
Sbjct: 364 HFKVIEK 370


>gi|320158479|ref|YP_004190857.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus MO6-24/O]
 gi|319933792|gb|ADV88655.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus MO6-24/O]
          Length = 459

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 144/363 (39%), Positives = 223/363 (61%), Gaps = 7/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P+++  +   GY + TPIQ +++PLVL   DV G  +TG+GKTA+F L +L+ 
Sbjct: 5   FNTLSLKPELLSTLDTLGYTEMTPIQAQSLPLVLAGKDVIGQGKTGSGKTATFSLGLLSN 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA       +  +N+ V  L GG+P   Q   LE 
Sbjct: 65  LNVSRFRVQ---SLVLCPTRELADQVATEIRTLARGIHNIKVLTLCGGMPMGPQILSLEH 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH ++G++ +  +  LV+DEADRML+MGF   I  I    P  RQTL
Sbjct: 122 GAHILVGTPGRILDHLSKGRIDLAELNTLVLDEADRMLEMGFQDAIDAIIDAAPTQRQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  ++++ ++   +QNP+ ++V + +    TIE  F    +   +  AL   LL  
Sbjct: 182 LFSATFPEQIETIASKVMQNPEMVKVES-THQKSTIEQRFYQLESTEERDNALEALLLTH 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   ++ ++FCN KK V N+   L  + FSV  +HG+++QR R + L+ F   +I ++VA
Sbjct: 241 RP--ESTVVFCNTKKEVQNVTDELNHRRFSVIELHGDMEQRERERALTMFANKSISILVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  V NF++    E ++HRIGRTGRAG  G A +  +++++  ++ IE
Sbjct: 299 TDVAARGLDVDNLDAVINFELSRDPEVHVHRIGRTGRAGAKGIAISFFSEKELYRVERIE 358

Query: 362 KLI 364
           + +
Sbjct: 359 EYM 361


>gi|125717559|ref|YP_001034692.1| RNA helicase [Streptococcus sanguinis SK36]
 gi|125497476|gb|ABN44142.1| RNA helicase, putative [Streptococcus sanguinis SK36]
          Length = 488

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 133/332 (40%), Positives = 209/332 (62%), Gaps = 6/332 (1%)

Query: 40  DVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY 99
           DV G AQTGTGKTA+F  P L  ++     V+    LI+ PTRELA Q  +   ++G++ 
Sbjct: 5   DVIGQAQTGTGKTAAFGFPTLEKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSK 61

Query: 100 NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159
            + V  + GG   E Q K L+ GA +++ TPGR+LD   R  L +N IE L++DEAD ML
Sbjct: 62  GVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEML 121

Query: 160 DMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
           +MGF+  I++I S VP  RQTLLFSATM D ++++   F++ P+ +++     T E ++ 
Sbjct: 122 NMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQ 181

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
            ++    + ++K   + +L+  +   +  I+F   K+ V  L   L+ +GF    IHG++
Sbjct: 182 YYI--RVKENEKFDTMTRLMDVEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDL 238

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
           DQ  R+++L +FK G + ++VA+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRA
Sbjct: 239 DQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRA 298

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
           G+ G++ T VA  ++ ++  IE L +K++  L
Sbjct: 299 GKSGQSITFVAPNEMGYLQIIENLTKKRMKGL 330


>gi|322379432|ref|ZP_08053802.1| ATP-dependent RNA helicase, DEAD-box family [Helicobacter suis HS1]
 gi|322380957|ref|ZP_08055023.1| ATP-dependent DEAD box-containing RNA helicase [Helicobacter suis
           HS5]
 gi|321146629|gb|EFX41463.1| ATP-dependent DEAD box-containing RNA helicase [Helicobacter suis
           HS5]
 gi|321148141|gb|EFX42671.1| ATP-dependent RNA helicase, DEAD-box family [Helicobacter suis HS1]
          Length = 471

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 214/368 (58%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL  K++ ++ DAG+  P+PIQ K IP++L+  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FKDLGLHSKILKSIADAGFTGPSPIQEKAIPVILEGKDVIAQAQTGTGKTAAFALPIIQN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  ++       LI+ PTRELA Q++D   K GK+       + GG   + Q   LER 
Sbjct: 82  LQNDKS----IEALIITPTRELAMQISDEIFKLGKSSRTRTICVYGGQSIKKQCDLLERN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    +L      ++V+DE+D MLDMGF+  I+ I + +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNKRLKRFAPRVVVLDESDEMLDMGFLDDIEEIFNYLPEDAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   ++ ++   LQ+P  I +     T   I   F     ++ +  A+++ L   +
Sbjct: 198 FSATMPAPIKDLANKILQDPVSIHIAPTHVTNADISQRFYVI-NEHERNEAIMRLL--DK 254

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     IIF   K+ V  L   L  +G+    +HG+++QR+R + +  FK     ++VA+
Sbjct: 255 ENHSKSIIFMRMKREVDELHQFLSAKGYKTTPLHGDMEQRARRESIKAFKSKLADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI DV HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDISDVSHVFNYHLPLNTESYIHRIGRTGRAGKKGVAITLVTPLEYKELQRMQK 374

Query: 363 LIEKKVDW 370
            I   ++ 
Sbjct: 375 DIGSSIEL 382


>gi|227832522|ref|YP_002834229.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262183610|ref|ZP_06043031.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453538|gb|ACP32291.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 462

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 142/362 (39%), Positives = 217/362 (59%), Gaps = 5/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG++ ++  A+ D G  +   IQ  T+P+ L   D+ G A+TG GKT  F +P+L  
Sbjct: 16  FAELGVAVEICDALADNGITRTFAIQELTLPIALNGQDLIGQARTGMGKTYGFGVPLLDR 75

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +        +   PR L++ PTRELA QV+ + E    N  L+V  L GG P+E Q  ++
Sbjct: 76  VFDDADIPELDGTPRALVIAPTRELAIQVSGDLELAAANLPLSVVTLCGGRPYEEQITQI 135

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-R 178
           E GADV++ TPGR+LD   +  L  +++ +LV+DEAD MLD+GF+P I+ I SL+     
Sbjct: 136 ESGADVVVGTPGRLLDLCQKKHLSFDHVSVLVLDEADEMLDLGFLPDIEKILSLLHGNPH 195

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATM   +  ++  FL+ P  I   +  +         V   A    K A+L + 
Sbjct: 196 QTMLFSATMPGPIVTLARTFLEKPVHIRAESGDAQHTHSSTRKVTFQAHRMDKIAVLGKA 255

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ++   +  IIF   K++   +   L ++GF V A+HG++DQ++R + L+ F+EGT+++
Sbjct: 256 LQAEGRGRT-IIFTRTKRSAAAVAEELAQRGFRVGAVHGDLDQKARERSLNTFREGTVEI 314

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI DV HV N+ VP+    ++HRIGRTGRAG  G A TLV  +++    
Sbjct: 315 LVATDVAARGIDIEDVTHVINYQVPDDPMTFVHRIGRTGRAGHTGTAVTLVGYDELSKWQ 374

Query: 359 AI 360
            I
Sbjct: 375 VI 376


>gi|229094565|ref|ZP_04225632.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-42]
 gi|228688812|gb|EEL42643.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-42]
          Length = 481

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 132/362 (36%), Positives = 218/362 (60%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  LS +V  A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  ++  P  IE+     T + IEH       +  +K +LL+ +   +
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L +  +    IHG + Q  R  ++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE 
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEA 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|319778596|ref|YP_004129509.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
 gi|317108620|gb|ADU91366.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
          Length = 581

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 144/393 (36%), Positives = 231/393 (58%), Gaps = 29/393 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   ++ ++    +  PT +Q+K+IPL L+  D+   AQTG+GKTA+F+LP +  
Sbjct: 6   FADLGIEQTLLKSLERIDFRNPTEVQVKSIPLALKGKDLIVSAQTGSGKTAAFMLPSIQQ 65

Query: 63  L--------------------EKGRARVRMPR----TLILEPTRELAAQVADNFEKYGKN 98
           L                     K R+    P+     L+L PTRELA QV+D  +++   
Sbjct: 66  LLHELETRPAPEQIASKSSKQRKRRSEANPPKYGVQILVLTPTRELAMQVSDATKEFIYG 125

Query: 99  Y-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
           +  + +A L+GG+ +  Q   L R  ++++ TPGR+LDH   G++ + N++IL++DEADR
Sbjct: 126 FKGVHIATLVGGMAYGPQINSLSREVEIVVATPGRLLDHIKAGRVNLRNLKILILDEADR 185

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I N+ +  P  RQTLLFSAT    + K++ + L +P+RI V+  +   + I
Sbjct: 186 MLDMGFIHDINNVVAETPDDRQTLLFSATFEGNVVKLARDMLTDPERIIVSDHTDKHQNI 245

Query: 218 E-HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
           E + F A    +  K  LL+ LL+  +  +  I+F   K+   +L   L+        +H
Sbjct: 246 EQYLFYADTVGH--KFKLLEALLKDPEA-EQVIVFTKTKRGATDLAGRLKDIDIKASELH 302

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G+++Q  R + +    +G I+++VA+D+AARG+DI  + HV N+D+P +AE+Y+HRIGRT
Sbjct: 303 GDMNQGQRNRTIQGLHKGKIKVLVATDVAARGIDIQGISHVINYDLPMQAEDYVHRIGRT 362

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           GRAGR G+A+TL    + + +  IE  I ++ D
Sbjct: 363 GRAGRDGRAYTLALLSERRGVRFIENYINREFD 395


>gi|167757993|ref|ZP_02430120.1| hypothetical protein CLOSCI_00330 [Clostridium scindens ATCC 35704]
 gi|167664425|gb|EDS08555.1| hypothetical protein CLOSCI_00330 [Clostridium scindens ATCC 35704]
          Length = 526

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 225/369 (60%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL P+++ AV + G+ + +PIQ K IP +L+  D+ G AQTGTGKTA+F +P+L  
Sbjct: 6   FEDLGLCPEIMKAVKNMGFEEASPIQAKAIPAMLEGKDIIGQAQTGTGKTAAFGIPLL-- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            EK   + +  + ++L PTRELA QVA+   N  KY   + + V  + GG     Q + L
Sbjct: 64  -EKIDPKNKKLQAIVLCPTRELAIQVAEEIRNLAKY--MHAIKVLPIYGGQEIVKQIRSL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  ++I TPGR++DH  R  + M N+  +V+DEAD ML+MGF   I+ I   VP  RQ
Sbjct: 121 KSGTQLIIGTPGRVMDHMRRKTVKMENVHTVVLDEADEMLNMGFREDIETILEGVPEERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   +  +++ F +N + I+V     T   IE  +     +   K  +L +LL
Sbjct: 181 TVLFSATMPKPILDITKRFQKNAELIKVTKKELTVPNIEQFYYEVKPK--NKEEVLSRLL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  K  +IFCN KK V  L + L  +G+    +HG++ Q  R +++  F++G  +++
Sbjct: 239 DIYNP-KLSVIFCNTKKQVDLLVNGLLGRGYFAAGLHGDMKQAQRDRVMDGFRKGKTEIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V  VFN+D+P   E Y+HRIGRTGRAGR G++F+ V  +++  +  
Sbjct: 298 VATDVAARGIDVEEVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVTGKEVYKLKE 357

Query: 360 IEKLIEKKV 368
           I++  + K+
Sbjct: 358 IQRYCKTKI 366


>gi|325269118|ref|ZP_08135738.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           multiformis DSM 16608]
 gi|324988505|gb|EGC20468.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           multiformis DSM 16608]
          Length = 572

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 153/425 (36%), Positives = 245/425 (57%), Gaps = 23/425 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L+  V+ A+ D  + + TP+Q K IP +L+  DV G+AQTGTGKTA+++LP+L
Sbjct: 1   MYFEDLDLNDNVLDALYDMRFDECTPVQEKCIPEILKGKDVLGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT----VALLIG--GIPFEA 114
           + L  G         +I+ PTRELA Q+    + +   Y L     VA+  G  G  ++ 
Sbjct: 61  SKLADGGYPESAINCVIMSPTRELAQQIDQAMQGFA--YYLDGVSCVAVYGGNDGNRYDQ 118

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           + K L  GADV+I TPGR + H + G + ++ +   ++DEADRMLDMGF   I  I   +
Sbjct: 119 ELKSLSLGADVVIATPGRFISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKKL 178

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P + QT++FSATM  +++++++  L+NP  I++   S  AE I       Y   ++K  +
Sbjct: 179 PASCQTIMFSATMPKKIEELAKTLLKNPVEIKLAV-SKPAEKIHQMAYVCYE--TQKIGI 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           ++ + ++ D +K  IIF   K+ V  +  SL ++  +   +H ++DQ  R  ++  FK G
Sbjct: 236 IKDIFKAGD-LKRVIIFSGSKQKVKQIAASLSRKHINCGEMHSDLDQEQRNDVMFKFKSG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I ++VA+D+ ARG+DI D+  V N+DVP+ AE+Y+HRIGRT RA R GKA T V+ +DI
Sbjct: 295 QIDVLVATDIVARGIDIDDITMVINYDVPHDAEDYVHRIGRTARADRDGKAITFVSVDDI 354

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
            +   IE  +EK+++ +        P  E++         K+N  P++ +    R++   
Sbjct: 355 YYFQQIEAFLEKEIEKI--------PLPEELG---EGPEYKSNGKPKRGSSAKSRRRKDR 403

Query: 415 SQKSH 419
            Q+SH
Sbjct: 404 DQQSH 408


>gi|157828874|ref|YP_001495116.1| ATP-dependent RNA helicase RhlE [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157801355|gb|ABV76608.1| ATP-dependent RNA helicase RhlE [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 410

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 216/364 (59%), Gaps = 13/364 (3%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +  LS +++ A+      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP++    
Sbjct: 3   NFNLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLIDSFI 62

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           K +        LIL PTRELA Q+     K   +Y +  A+LIGG P   Q  +L++   
Sbjct: 63  KNKTTA-----LILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQLKKNPK 117

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG    ++ I   +P  RQ L+FS
Sbjct: 118 VIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFS 177

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQSQ 242
           ATM   +  VS+ +L NP RI V   +  A  I  E   V+   ++S   AL +QL   +
Sbjct: 178 ATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFS---ALTKQLGHRE 234

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            ++   IIF   K++   L   L+ +  +  AIHG++ QR R +++ +F++   ++MVA+
Sbjct: 235 GSV---IIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVAT 291

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +D+    AI++
Sbjct: 292 DVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIRWRAIDR 351

Query: 363 LIEK 366
           L+ K
Sbjct: 352 LVNK 355


>gi|24372534|ref|NP_716576.1| ATP-dependent RNA helicase SrmB [Shewanella oneidensis MR-1]
 gi|24346546|gb|AAN54021.1|AE015540_1 ATP-dependent RNA helicase SrmB [Shewanella oneidensis MR-1]
          Length = 420

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 219/368 (59%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P ++ ++   G++ PT IQ +T+P  L++ D+   A TGTGKTASF+LP L
Sbjct: 1   MQFEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPAL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +++  R      R LIL PTRELA+Q+         +  L +A++ GG+P+  Q + L
Sbjct: 61  QHLIDFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   D+L+ TPGR++++ ++GK    +++IL+IDEADRMLDMGF   ++ I       +Q
Sbjct: 121 KGNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQ 180

Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            +LFSAT+    + + +   L +P  I+V+ P      I H ++        K ALL  L
Sbjct: 181 NMLFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKI-HQWIHLADDKDHKFALLCHL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ +D +K  I+F   +  V +L   L + G     + G+++Q+ R + LS F +G + +
Sbjct: 240 LKQED-VKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI D+ HV NFD+P  A+ YIHRIGRTGRAG  G A +L    D++ + 
Sbjct: 299 LLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVG 358

Query: 359 AIEKLIEK 366
            IE+ IE+
Sbjct: 359 KIERYIEQ 366


>gi|228988681|ref|ZP_04148767.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771132|gb|EEM19612.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 481

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 132/362 (36%), Positives = 218/362 (60%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  LS +V  A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  ++  P  IE+     T + IEH       +  +K +LL+ +   +
Sbjct: 183 FSATLPEDVERLSRTYMNAPIHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTTIE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L +  +    IHG + Q  R  ++ +F++G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE 
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITSYEDRFLEEIEA 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|115373138|ref|ZP_01460440.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1]
 gi|115369894|gb|EAU68827.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1]
          Length = 606

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 144/365 (39%), Positives = 217/365 (59%), Gaps = 12/365 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLS + + AV  A +  PTPIQ + IP  L   DV G A TGTGKTA+++LP++ 
Sbjct: 31  SFKSLGLSSESLDAVRRARFASPTPIQAQAIPPALAGRDVIGCAVTGTGKTAAYLLPLVE 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L    A  R P  L+L PTREL  Q+A     +G+   LT A++ GG    AQ + L +
Sbjct: 91  RL----AGERGPVGLVLAPTRELVLQIAQEAAFFGEPRGLTQAVVTGGTDMGAQVEALRQ 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+ D    G   ++ + +LV+DEADR L+MGF+P +Q I + +P  RQTL
Sbjct: 147 RPTLVLATPGRLADLLKEGVANLSAVRMLVLDEADRTLEMGFMPELQQILAALPRERQTL 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSST--AETIEHCFVATYAQYSKKCALLQQLL 239
           LFSAT+   + + ++  L+ P R+EV TPS T  A  ++  +     + S+K  LL  LL
Sbjct: 207 LFSATLGHNVTRFAQEVLRKPVRVEV-TPSGTPAARAVQRLY---EVEASEKYPLLLSLL 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++D +   ++F   ++    +   L++ G    AIH +  Q  R + L  F+ G  + +
Sbjct: 263 -AKDQLSV-LVFTRTRERAEKVQEVLKRAGHKTAAIHADRTQGQRRQALEGFRRGQYRCL 320

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLD+ D+GHV NFD+P+  E+Y+HRIGRT RAG  G+A T V   D + + A
Sbjct: 321 VATDIASRGLDVEDIGHVINFDLPHAPEDYVHRIGRTARAGASGRASTFVTSRDEETVRA 380

Query: 360 IEKLI 364
           IE+++
Sbjct: 381 IERIV 385


>gi|24372003|ref|NP_716045.1| ATP-dependent RNA helicase RhlB [Shewanella oneidensis MR-1]
 gi|32363323|sp|Q8EJQ5|RHLB_SHEON RecName: Full=ATP-dependent RNA helicase rhlB
 gi|24345864|gb|AAN53490.1|AE015489_3 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 439

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 147/384 (38%), Positives = 234/384 (60%), Gaps = 13/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FADL L P+V  A+ + G+   TPIQ  ++P++LQ  D+ G AQTGTGKT +F++     
Sbjct: 11  FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH 70

Query: 61  ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              + + +GR ++  PR +I+ PTRELA Q+A +     K+  L V ++ GG  ++ Q K
Sbjct: 71  LLSSSIPEGR-QLNQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+LI T GRI+D+  +G + +N I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLDQGVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNA 189

Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234
            Q L  LFSAT++ ++Q+++ + + +P ++E+     T++ I E  F   Y     K  L
Sbjct: 190 DQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIF---YPSQEDKMRL 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L++ +D  +  I+F N K +  NL   LE  G  V  + G++ Q+ R++IL  F +G
Sbjct: 247 LLTLIE-EDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG  G + +   +E  
Sbjct: 306 QLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYA 365

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL 378
            ++ AIE  I   +   N D  +L
Sbjct: 366 LNLPAIETYINHSIPVSNYDRDAL 389


>gi|332798288|ref|YP_004459787.1| DEAD/DEAH box helicase domain-containing protein [Tepidanaerobacter
           sp. Re1]
 gi|332696023|gb|AEE90480.1| DEAD/DEAH box helicase domain protein [Tepidanaerobacter sp. Re1]
          Length = 529

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 158/392 (40%), Positives = 234/392 (59%), Gaps = 13/392 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++ A+ D G+ + TPIQ + IP + +  DV G AQTGTGKTA+F LP+L
Sbjct: 4   MKFEELNLSKELLRAINDMGFEEATPIQSQAIPYIYEGRDVIGQAQTGTGKTAAFGLPIL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
            +++      +  + +IL PTRELA QVA+  +   K    + +  + GG P E Q   L
Sbjct: 64  DMIDTDD---KNQQAIILCPTRELAIQVAEELKALSKYKEGMKILPVYGGQPIERQIHAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  ++I TPGR++DH  R  L + N +I+V+DEAD MLDMGF   I+ I    P  RQ
Sbjct: 121 KRGVQIIIGTPGRVMDHMRRHTLKLQNTKIVVLDEADEMLDMGFREDIEKILEDTPKARQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT+   + +++E +L NP+ I+V     T  ++E  +     +   K   L +L+
Sbjct: 181 TLMFSATIPKPILELAERYLNNPQLIKVVHKELTVPSVEQYYFEV--KERDKVEALSRLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     ++FCN KK V  L   L+ +G+S   +HG++ Q  R ++++ FK GTI ++
Sbjct: 239 DFYNP-NLALVFCNTKKRVDELMEQLQARGYSADGLHGDMSQSQRDRVMTKFKNGTIDIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV  V NFDVP   E Y+HRIGRTGRAGR GKAFT V   DI  +  
Sbjct: 298 VATDVAARGLDVDDVDVVVNFDVPQNDEYYVHRIGRTGRAGRSGKAFTFVIGRDIYKLKD 357

Query: 360 IEKLIEKKV------DWLNGDLSSLNPPLEKI 385
           I++    K+        L+ + + +N  LEK+
Sbjct: 358 IQRYANTKILRREIPSLLDVEETRINLLLEKV 389


>gi|269140076|ref|YP_003296777.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|267985737|gb|ACY85566.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|304559904|gb|ADM42568.1| ATP-dependent RNA helicase SrmB [Edwardsiella tarda FL6-60]
          Length = 448

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 150/431 (34%), Positives = 234/431 (54%), Gaps = 13/431 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L L  +++ A+ D GY +PT IQI  IP  +   DV G A TGTGKTA+F+LP L 
Sbjct: 5   NFSELELDERLLDALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  ++ +L +  + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRVLILTPTRELAMQVADQARELARHTSLDITTITGGVSYINHAEIFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L +          +E L++DEADRMLDMGF   I+ +++   + RQT
Sbjct: 125 TNQDMVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFASDIETVSAETRWRRQT 184

Query: 181 LLFSATM-TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+ +D +   ++  L +P  +    P    + I+  +    +    K ALL  LL
Sbjct: 185 LLFSATLESDAVHDFADRLLNDPVDVSAEPPRRERKKIQQWYYRADS-LKHKTALLCSLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  K+ +IF  +++ V  L   L + G   C + G + Q  R + +    +G + ++
Sbjct: 244 RQPDVTKS-VIFVRKRERVHELVTWLHQAGIQACFLEGEMVQAKRNEAIKRMLDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIPD+ HVFNFD+P  A+ Y+HRIGRT RAGR G A +L+   D   +  
Sbjct: 303 VATDVAARGLDIPDISHVFNFDMPRSADVYLHRIGRTARAGRKGTAISLIEAHDQLLLGK 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           + + +++ +   +  +  L P  +   +       KN   P K     R +K    QK  
Sbjct: 363 VSRYVQEPLK--SRVVDELRPETKAPSL-------KNKGKPSKKVQAKRAQKKADEQKKK 413

Query: 420 IPLKESEKISK 430
           +  K   + SK
Sbjct: 414 VKTKVRHRDSK 424


>gi|86148322|ref|ZP_01066616.1| putative ATP-dependent RNA helicase [Vibrio sp. MED222]
 gi|85833877|gb|EAQ52041.1| putative ATP-dependent RNA helicase [Vibrio sp. MED222]
          Length = 428

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 216/370 (58%), Gaps = 15/370 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
           +F+DLGL   ++  + +  Y +PTPIQ + IP VL   D+   A TG+GKTA+F LP+L 
Sbjct: 9   NFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAERDLIAGANTGSGKTAAFALPLLQ 68

Query: 61  -----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113
                  L++   +      LIL PTRELA QVAD+ + Y  ++N  +    + GG+   
Sbjct: 69  KIHEDAPLDRRSGKGNYVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVN 128

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L  G D+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  I  L
Sbjct: 129 TQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKL 188

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKC 232
           +P  +QTLLFSAT  ++++ ++   L +P  IEV   S+ A T ++  F     +  +K 
Sbjct: 189 LPSKKQTLLFSATFPEQVKTLTHELLNDP--IEVQLQSANASTLVQRVF---EVEKGRKT 243

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           ALL  L+Q Q   +  +IF N K +  +L   L K+G      HG+  Q SR +IL +FK
Sbjct: 244 ALLAHLIQ-QHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFK 302

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G I +++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G A +L+  E
Sbjct: 303 SGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHE 362

Query: 353 DIKHIDAIEK 362
           D  H   IEK
Sbjct: 363 DYHHFTIIEK 372


>gi|229085402|ref|ZP_04217643.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-44]
 gi|228697878|gb|EEL50622.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-44]
          Length = 433

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 138/364 (37%), Positives = 222/364 (60%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ + IP+V+   D+ G A+TGTGKT +FVLP+L 
Sbjct: 3   NFLELGISETFNHTLRENGIAEATPIQEQAIPVVMAGKDIIGQAKTGTGKTLAFVLPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    EK      ++ V  + GG     Q +KL+
Sbjct: 63  KIDPESSDVQ---ALIVAPTRELALQITTEIEKMLVHKEDINVLAIYGGQDVAQQMRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  ++++N+ +LV+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETPESKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ +++ P+ I + +   T   I+   + T    +K+ AL   + +
Sbjct: 180 MLFSATMPKDIKKLAKRYMKEPEMIRIQSEEVTVNNIKQRVIET-TDRAKQDALRHVMDR 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   +IFC  K+    L   L+  G++   +HG++ Q  R +++ +F+E  IQ ++
Sbjct: 239 DQPFL--AVIFCRTKRRASKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFREAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D  H+  I
Sbjct: 297 ATDVAARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAPKDEMHLKEI 356

Query: 361 EKLI 364
           EK I
Sbjct: 357 EKGI 360


>gi|33863354|ref|NP_894914.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9313]
 gi|33640803|emb|CAE21258.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9313]
          Length = 635

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 139/373 (37%), Positives = 222/373 (59%), Gaps = 9/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F   G S  ++  + + GY +P+PIQ   IP ++   D+ G AQTGTGKTA+F LP++ 
Sbjct: 84  EFDCFGFSEPLLKTLAEKGYKQPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLIE 143

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L    +R   P+ L+L PTRELA QVAD+F  Y   + +L V  + GG  F +Q   L+
Sbjct: 144 RLHDHGSR---PQVLVLAPTRELAMQVADSFRAYAVGHPHLKVLAVYGGADFRSQINTLK 200

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR++DH  +G L  + +  LV+DEAD ML MGFI  ++ I   +P  RQ 
Sbjct: 201 RGVDVVVGTPGRLMDHMRQGTLDTSGLRCLVLDEADEMLRMGFIDDVEWILEQLPEERQM 260

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLL 239
           +LFSATM  E++++S+ +L  P  I + +    A  I + C      Q S K   L+++L
Sbjct: 261 VLFSATMPSEIRRLSKRYLHEPAEITIKSRDQEARLIRQRCIT---LQNSHKLEALRRVL 317

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++  T +  IIF   K   + +  +LE  G  V  ++G++ Q  R + +   ++G++ ++
Sbjct: 318 EAF-TGEGVIIFARTKVITLTVAEALEAAGHDVAVLNGDVPQNQRERTVERLRKGSVNIL 376

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +  V N+D+P  +E Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 377 VATDVAARGLDVDRISLVINYDIPFDSEAYVHRIGRTGRAGRSGEAILFVNPRERRFVGG 436

Query: 360 IEKLIEKKVDWLN 372
            E+ + + ++ ++
Sbjct: 437 FERAVGQPIEPMD 449


>gi|95930869|ref|ZP_01313600.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
 gi|95133111|gb|EAT14779.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
          Length = 463

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 140/368 (38%), Positives = 219/368 (59%), Gaps = 6/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ L L P ++  +   GY   TPIQ +++P +L   DV G  +TG+GKTA+F L +L 
Sbjct: 5   DFSTLKLQPALLKNLQSIGYAHMTPIQAQSLPHILAGRDVIGQGKTGSGKTAAFGLGLLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            L   R  V+    L+L PTRELA QVA    K  +  +N+ V  L GG+PF  Q   LE
Sbjct: 65  KLNVKRFHVQ---ALVLCPTRELADQVAKEIRKLARTIHNIKVLTLCGGMPFGPQLGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRI +H  +G L ++N+ +LV+DEADRML+MGF   +  I    P TRQT
Sbjct: 122 HGAHIIVGTPGRIEEHVRKGALKLDNLTLLVLDEADRMLEMGFQEALDAIIDQTPQTRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT   +++ ++   ++ P  ++V     +A   +H +        ++ AL + L  
Sbjct: 182 LLFSATFPRQIESIAGRVMKTPVMVQVEATHDSAVITQHFYEVADDTADRQQALRRLLRY 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q T  + ++FCN K++  ++   L + GFS  A+HG+++QR R + L  F  G+  ++V
Sbjct: 242 YQPT--SAVVFCNTKQDTRDVADDLREHGFSALALHGDLEQRERDQSLVRFSNGSASILV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  VFN+ +    E ++HRIGRTGRAG HG A +L + ++   ++ +
Sbjct: 300 ATDVAARGLDIEALDAVFNYHIARDTEVHVHRIGRTGRAGSHGMACSLYSAKEHFKVERL 359

Query: 361 EKLIEKKV 368
            K +++ +
Sbjct: 360 AKFLDQSL 367


>gi|309389357|gb|ADO77237.1| DEAD/DEAH box helicase domain protein [Halanaerobium praevalens DSM
           2228]
          Length = 529

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 141/367 (38%), Positives = 224/367 (61%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L +S +++ AV + G+ + TPIQ   IP VL   D+ G AQTGTGKTA+F +P+L  
Sbjct: 6   FNELNVSDEILKAVEEMGFEETTPIQTNAIPAVLNGQDIVGQAQTGTGKTAAFGIPLL-- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL-LIGGIPFEAQNKKLER 121
            E+  +  + P+ +IL PTRELA QV++  ++  K       L + GG     Q K L++
Sbjct: 64  -EEMDSENKNPQAIILCPTRELAIQVSEELKRLAKYKRRIYTLPVYGGQSIGRQIKALKK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR++DH  R  L ++NI   V+DEAD MLDMGFI  I+ +   +P  RQTL
Sbjct: 123 GVQIVIGTPGRVMDHIRRKTLKLDNINYFVLDEADVMLDMGFIDDIETVLRDIPDDRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT+   ++++S+ + +N K + V   + T  +I+  +     + + K   L +++  
Sbjct: 183 FFSATIPKSIKRLSKKYQKNSKFLRVAHENLTVPSIDQYYYEI--RRNDKLKALTRIMDL 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  I+FCN +K V  L   L+ +G+   AIHG ++Q  R +++  F+ G I+++VA
Sbjct: 241 SNP-ELAIVFCNTRKMVDELNIKLQARGYLSDAIHGGLNQNQRDRVMKKFRSGIIEVLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+D+P   + Y+HRIGRTGRAG+ G+A   V  +DI  +  I+
Sbjct: 300 TDVAARGIDVDDVEAVFNYDLPQDTDYYVHRIGRTGRAGKSGEAHNFVVGKDIYKLRDIQ 359

Query: 362 KLIEKKV 368
           K  + K+
Sbjct: 360 KYTKSKI 366


>gi|325123630|gb|ADY83153.1| ATP-dependent RNA helicase [Acinetobacter calcoaceticus PHEA-2]
          Length = 620

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 144/377 (38%), Positives = 227/377 (60%), Gaps = 15/377 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP L  
Sbjct: 5   FAEFSLHETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 64

Query: 63  L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111
           L          E+ +A V  P  L+L PTRELA QV+ +   + ++   + +A ++GG+P
Sbjct: 65  LAGQETFVPFKERMKA-VTQPNILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           F  Q ++L +GA V++ TPGR+LD  NR +L ++ +E L++DEADRMLD+GF   ++ I+
Sbjct: 124 FGKQIQQL-KGAQVIVATPGRLLDLVNRRQLKLDKVEALIVDEADRMLDLGFSEDLEAIS 182

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            L    RQTL+FSAT  D + +++E  +  P+RI + T  ST   I      T     KK
Sbjct: 183 DLAGNRRQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 242

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L   L  + +T+   ++F + +++   L   L + G SV A+HG + Q  R + L + 
Sbjct: 243 KLLTHWL--ADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 300

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL   
Sbjct: 301 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATY 360

Query: 352 EDIKHIDAIEKLIEKKV 368
            +   I A+E  ++ ++
Sbjct: 361 RERGKIRALEDYLDARL 377


>gi|326318919|ref|YP_004236591.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323375755|gb|ADX48024.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 478

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 151/392 (38%), Positives = 221/392 (56%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL+P+V+  +   GY + TPIQ  ++P  L   D+   A TG+GKTA+F L +L  
Sbjct: 20  FDALGLAPEVLANLRQLGYERMTPIQAASLPPALLGRDLIAQASTGSGKTAAFGLALLER 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L   R  V+    L+L PTRELA QVA    +  +   N+ V  L GG+P   Q   LE 
Sbjct: 80  LNPRRFAVQ---ALVLCPTRELADQVASEIRRLARAQENIKVVTLCGGVPLRGQVASLEH 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  RG L +  +   V+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 137 GAHVVVGTPGRVMDHLERGTLDLGALATFVLDEADRMLDMGFSEDIAQVARRCPDTRQTL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D +++++  F+++P+RI V    +  +  +  +     Q  ++   + QLL +
Sbjct: 197 LFSATYPDGIERIARQFMKDPQRIAVQAQHAEGKIEQRWY---EVQERERLHAVSQLL-N 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ I FCN K+   +L   L  QGFS  A+HG+++QR R ++L  F   +  ++VA
Sbjct: 253 HFRPESAIAFCNTKQQCRDLVEVLRAQGFSALALHGDLEQRDRDQVLVQFANRSCSVLVA 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI  +  V N DV    E +IHRIGRTGRA   G A +L +  ++  +  IE
Sbjct: 313 TDVAARGIDIAGLQAVINVDVAPDPEVHIHRIGRTGRADAEGLALSLASLPEMGQVGRIE 372

Query: 362 KLIEKKVDW--LNGDLSS----LNPPLEKIDI 387
            L  +  +W  L+G   +    L PP+  I I
Sbjct: 373 VLQGRPSEWHPLSGLTPAPGGPLQPPMATIQI 404


>gi|225435708|ref|XP_002283489.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147854540|emb|CAN78578.1| hypothetical protein VITISV_013679 [Vitis vinifera]
          Length = 612

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 149/384 (38%), Positives = 214/384 (55%), Gaps = 24/384 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++ L   +   +    YVKPTP+Q   IP+ L   D+   AQTG+GKTA+F  P+++ 
Sbjct: 155 FAEIDLGEALNQNIKRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISG 214

Query: 63  LEKGRARVRMPR--------TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           + KG+A  R PR         LIL PTREL+ Q+ D  +K+     + V +  GG P   
Sbjct: 215 IMKGQASQRPPRGARTVYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPISQ 274

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG D+L+ TPGR++D   R ++ +  I  L +DEADRMLDMGF P I+ I   +
Sbjct: 275 QLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQM 334

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQT+LFSAT   E+QK++ +FL N   + V    S+ + I       +   + 
Sbjct: 335 DMPPQGVRQTMLFSATFPKEIQKLASDFLSNYVFLAVGRVGSSTDLIVQ--RVEFVHDTD 392

Query: 231 KCALLQQLLQSQDTMKNGI--------IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
           K + L  LL +Q    NG+        +F   KK   +L H L   GF    IHG+  Q+
Sbjct: 393 KRSHLMDLLHAQ--RANGVHGKQYLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQ 450

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ 
Sbjct: 451 EREQALRSFKSGVTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKT 510

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEK 366
           G A       +     A+ +L+++
Sbjct: 511 GLATAFFNDNNSSLAKALSELMQE 534


>gi|297595326|gb|ADI48178.1| vasa [Crepidula fornicata]
          Length = 502

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 145/390 (37%), Positives = 226/390 (57%), Gaps = 18/390 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL P  +  V  AGY KPTPIQ   IP +L   D+ G AQTG+GKTA+F+LP+LT 
Sbjct: 59  FEDAGLLPTFLKNVQRAGYTKPTPIQKHAIPSILAGRDLMGCAQTGSGKTAAFILPVLTA 118

Query: 63  LEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           + K        +  + P+T+++ PTRELA+Q+     K+    ++   ++ GG+    Q 
Sbjct: 119 MVKEGLTCSPMSEFQEPQTIVVAPTRELASQIYTEARKFALRTDVRPVVVYGGVSVAHQL 178

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +++E GA++++ TPGR+LD   RGK+ +  ++ L++DEADRMLDMGF P I+ +   +  
Sbjct: 179 RQVESGANLVVGTPGRLLDFIERGKISVKKVKFLILDEADRMLDMGFEPSIRKLVESLGM 238

Query: 177 ----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                RQTL+FSAT   E+Q+++ +F+ +   I V         +E  F+       +K 
Sbjct: 239 PSKSERQTLMFSATFKAEIQQLAADFMNDYLFITVGIVGGACSDVEQTFLEV--DRLQKR 296

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L  +L S  T +  ++F  QK+N   L   L + G+   +IHG+  QR R + L +FK
Sbjct: 297 EYLCDILNSSGTNRV-LVFVGQKRNADFLASFLSQSGYPTTSIHGDRLQREREEALMDFK 355

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+++AARGLDIPDV HV N+D+P   + Y+HRIGRTGR G  GKA +  +++
Sbjct: 356 RGKSPVLIATNVAARGLDIPDVTHVVNYDLPTDIDEYVHRIGRTGRCGNLGKATSFYSQD 415

Query: 353 -DIKHIDAIEKLI----EKKVDWLNGDLSS 377
            D     ++ K++    ++  DWL     S
Sbjct: 416 TDFALASSLVKILSEARQEVPDWLTAHADS 445


>gi|284053417|ref|ZP_06383627.1| DEAD/DEAH box helicase-like protein [Arthrospira platensis str.
           Paraca]
          Length = 465

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 146/361 (40%), Positives = 222/361 (61%), Gaps = 6/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+S +    +   G+ +PTP+QI+ IP +L   DV G+AQTGTGKTA+F LP+L  
Sbjct: 5   FESLGISEQRARHLETLGFTEPTPVQIQAIPEMLSGRDVVGMAQTGTGKTAAFSLPILEQ 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++   A ++    L+L PTRELA QV +    +  +  L V  + GG   + Q ++L RG
Sbjct: 65  IDVHAAGIQ---ALVLTPTRELAMQVKEAIRTFSDDNALYVLTVYGGQSIDRQIQRLRRG 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPFTRQTL 181
             V++ TPGRILD  NRG+L ++++  LV+DEAD ML MGFI  ++ I  S     RQT 
Sbjct: 122 VQVVVGTPGRILDLLNRGELKLDSLRWLVLDEADEMLSMGFIQDVEKILESADSEHRQTA 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   + K+    L++P  ++V TP +T + IE         +SK  AL + +L+ 
Sbjct: 182 FFSATMDASISKLVRRHLKSPVTVKVETPKATPKRIEQSVYMVPRGWSKARAL-EPILEL 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D  ++ IIF   K++  +L + L+  G SV   HGN++Q  R ++L   +   ++ +VA
Sbjct: 241 EDP-ESAIIFVRTKQSAADLTNQLQAAGHSVDEYHGNLNQSQRERLLMRLRRRQVRWIVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P++ ++Y+HRIGRTGRAGR GKA TL+   D + +  IE
Sbjct: 300 TDIAARGLDVDHLTHVINYDLPDQVDSYVHRIGRTGRAGREGKAITLIQPIDRRKLRNIE 359

Query: 362 K 362
           +
Sbjct: 360 R 360


>gi|268591855|ref|ZP_06126076.1| ATP-independent RNA helicase DbpA [Providencia rettgeri DSM 1131]
 gi|291312828|gb|EFE53281.1| ATP-independent RNA helicase DbpA [Providencia rettgeri DSM 1131]
          Length = 457

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 226/370 (61%), Gaps = 9/370 (2%)

Query: 3   FADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FADL  LS + +  + + GY+  T IQ   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FADLNALSAEQLTNLQELGYLNMTQIQAAALPPILAGKDVRAQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++   A++   ++L+L PTRELA QVA+   +  +   N+ +  L GG+PF  Q   L 
Sbjct: 64  HID---AKLFKTQSLVLCPTRELADQVANELRRLARAIPNIKILTLCGGVPFSVQRDSLA 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             A +++ TPGR+LDH NR  + ++ ++ LV+DEADRMLDMGF+P I+ I    P  RQT
Sbjct: 121 HAAHIIVATPGRLLDHLNRETVQLDALQTLVLDEADRMLDMGFMPDIETIIDYAPINRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  +E+ ++S+    NP+ IE+N+       +E  F        +K  LLQ+LL 
Sbjct: 181 LLFSATWPEEIARISQQIQNNPQTIEINSVDELP-AVEQQFYEVARH--EKIELLQKLL- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++   + ++FCN KK+   +  +L     SV  +HG+++QR R + L  F  G+ +++V
Sbjct: 237 SREQPASCVVFCNTKKDCQAVYDALTASKQSVLVLHGDMEQRERDQTLVRFANGSSRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI  +  V N+++    E ++HRIGRT RAG  G A +L A E+ +  +A+
Sbjct: 297 ATDVASRGLDIKALEMVINYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRANAL 356

Query: 361 EKLIEKKVDW 370
           E+++  K++W
Sbjct: 357 EEMLNMKLNW 366


>gi|113968755|ref|YP_732548.1| ATP-dependent RNA helicase RhlB [Shewanella sp. MR-4]
 gi|114049101|ref|YP_739651.1| ATP-dependent RNA helicase RhlB [Shewanella sp. MR-7]
 gi|123030016|sp|Q0HN76|RHLB_SHESM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|123326096|sp|Q0HQL1|RHLB_SHESR RecName: Full=ATP-dependent RNA helicase rhlB
 gi|113883439|gb|ABI37491.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
 gi|113890543|gb|ABI44594.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 439

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 149/393 (37%), Positives = 238/393 (60%), Gaps = 17/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FADL L P+V  A+ + G+   TPIQ  ++P++LQ  D+ G AQTGTGKT +F++     
Sbjct: 11  FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH 70

Query: 61  ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              T + + R ++  PR +I+ PTRELA Q+A +     K+ +L V ++ GG  ++ Q K
Sbjct: 71  LLSTPIPENR-QLNQPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYGGESYDVQRK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+LI T GRI+D+  +G + +N I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLDQGVDILIGTTGRIIDYVRQGIISLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNA 189

Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234
            Q L  LFSAT++ ++Q+++ + + +P ++E+     T++ I E  F   Y     K  L
Sbjct: 190 DQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIF---YPSQEDKIRL 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L++ +D  +  I+F N K +  NL   LE  G  V  + G++ Q+ R++IL  F +G
Sbjct: 247 LLTLIE-EDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG  G + +   +E  
Sbjct: 306 QLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYA 365

Query: 355 KHIDAIEKLIEKKVDWLNGD----LSSLNPPLE 383
            ++ AIE  I   +   N D    L  + PP++
Sbjct: 366 LNLPAIESYINHSIPVSNYDRDALLDDIPPPVK 398


>gi|228985558|ref|ZP_04145712.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774135|gb|EEM22547.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 454

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 142/364 (39%), Positives = 221/364 (60%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ + IP++L   D+ G A+TGTGKT +FVLP   
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLP--- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
           ILEK        + LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 63  ILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLTTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T  TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLI 364
           EK +
Sbjct: 360 EKTL 363


>gi|124002116|ref|ZP_01686970.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134]
 gi|123992582|gb|EAY31927.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134]
          Length = 571

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 220/368 (59%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F ++GL  +++ AV + G+ KPTPIQ + IP +L +  D+   AQTGTGKTA+F LP+L 
Sbjct: 4   FEEIGLRSEILQAVQELGFEKPTPIQEQAIPYLLTEETDLLAFAQTGTGKTAAFSLPLLE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +++    LIL PTREL  Q+A + + + K   +    + GG   + Q   L+R
Sbjct: 64  SIDPDSKQIQ---ALILCPTRELCLQIARDIQSFAKFMKIRTTAVYGGASIDKQIDALKR 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR LD   R KL +  I+ LV+DEAD ML+MGF   +  I +  P  +QTL
Sbjct: 121 GVHIVVGTPGRSLDLIKRKKLKLEQIQWLVLDEADEMLNMGFKQELDAILATTPKEKQTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  EL +++E ++  PK+I V   +S A+ + H F     Q   +   L+++   
Sbjct: 181 LFSATMPQELIRIAEQYMHQPKKISVGQRNSGAKNVSHEFYVV--QPRDRYQALKRIADI 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +  GI+FC  ++   ++ + L + G++  A+HG++ Q  R  ++  F+   +Q++VA
Sbjct: 239 NPHI-YGIVFCRTRRETKDIANKLIQDGYNADALHGDLSQAQRDHVMGRFRSRHLQILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++ HV NF++P+  E YIHR GRTGRAG+ G +  ++   +   I  IE
Sbjct: 298 TDVAARGLDVDEITHVINFNLPDDLEVYIHRSGRTGRAGKTGVSLLIIGGREAGKIKTIE 357

Query: 362 KLIEKKVD 369
           + I KK D
Sbjct: 358 RKIGKKFD 365


>gi|159463464|ref|XP_001689962.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158283950|gb|EDP09700.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 567

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 139/381 (36%), Positives = 219/381 (57%), Gaps = 7/381 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G  P ++  +  AG+  PTPIQ +  P+ L   D+  IA+TG+GKT  F+LP +  
Sbjct: 127 FESVGFPPDILDEIRRAGFKSPTPIQAQAWPIALSGRDLVAIAKTGSGKTCGFLLPGMLH 186

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++  R   R+ P  L+L PTRELA Q+    +K+G++  +    + GG P   Q + L+ 
Sbjct: 187 IQATRKDARVGPTLLVLAPTRELAVQIKTEADKFGRSSGIRNTCVYGGAPKGPQLRDLQY 246

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR+ D    G++ +  +  LV+DEADRMLDMGF P IQ I   +P  RQTL
Sbjct: 247 GVQIVIATPGRLNDFLEAGQVRLQQVSYLVLDEADRMLDMGFEPQIQRIVRTLPRQRQTL 306

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ----YSKKCALLQQ 237
            FSAT   E++ ++  F+ N + + V       + + +  +  Y        +K A L +
Sbjct: 307 FFSATWPREVKHIASQFVVN-QTVHVFIGGVEEKLVANKSITQYVSVVNGMHEKFAELAK 365

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++++      IIFC  K+    L + + ++ F   AIHG+  Q  R  +L  FK+G   
Sbjct: 366 IIRAKPPGTRIIIFCTTKRMCDQLSYQMGRE-FRSAAIHGDKKQSERDYVLQAFKDGRTP 424

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIP+V  V NFD P   E+YIHRIGRTGRAG  G+++T +++ED KH 
Sbjct: 425 ILVATDVAARGLDIPNVAAVVNFDFPTGTEDYIHRIGRTGRAGATGESYTFMSQEDAKHA 484

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + +++ +    ++ +L  L
Sbjct: 485 RDLMQVMREAGQTISPELEQL 505


>gi|186474785|ref|YP_001856255.1| ATP-dependent RNA helicase DbpA [Burkholderia phymatum STM815]
 gi|184191244|gb|ACC69209.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 463

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 151/394 (38%), Positives = 220/394 (55%), Gaps = 18/394 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L LS  V+  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 8   FSELPLSQAVLANLTQLGYADMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    ++L PTRELA QV     +  +   N+ V  L GG P   Q   LE 
Sbjct: 68  LDARRYAVQ---AMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  RG L ++ +  LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 125 GAHIVVGTPGRIMDHLERGSLSLDALNTLVLDEADRMLDMGFFDDIAKVARQCPKERQTL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K+S+ FL+NPK +++      ++  +  +  T     ++   + QLL  
Sbjct: 185 LFSATYPEGIAKLSQQFLRNPKEVKLEERHDDSKIRQRFYEVT---EDERLHAVGQLLNH 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   I FCN K    +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 242 YRPVST-IAFCNTKNQCRDLLDVLCAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L +  ++  + AIE
Sbjct: 301 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGAIE 360

Query: 362 KLIEKKVDWLNGDLSSLN--------PPLEKIDI 387
           +   + V+W    L+ LN        PP+E + I
Sbjct: 361 EAQGRDVEW--HPLAELNAASDEPLLPPMETLQI 392


>gi|311747453|ref|ZP_07721238.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1]
 gi|126574812|gb|EAZ79183.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1]
          Length = 580

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 144/386 (37%), Positives = 225/386 (58%), Gaps = 21/386 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DLG+S +++ +V + GY +P+ IQ + IP VL   DV G AQTGTGKTA+F +P++
Sbjct: 5   LKFSDLGISSEILKSVEEMGYTQPSQIQSQAIPFVLDGRDVIGQAQTGTGKTAAFGIPII 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
            +++    +V+    +IL PTRELA QV    +K  K +  +    + GG   + Q + L
Sbjct: 65  DLVDPDFNKVQ---AVILCPTRELAVQVEGEIQKLAKYHRKINSVAIYGGESIDRQIRVL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  +++ TPGR+ DH NRG L + N  I+V+DEAD MLDMGF   I+ I   +P  RQ
Sbjct: 122 RKGVQIVVGTPGRVQDHINRGTLKLENTGIIVLDEADEMLDMGFRDDIEAILQEMPEKRQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+ FSATM   +  ++  +  NP+ I+V     T + IE  F      Y  K +L  +L+
Sbjct: 182 TVFFSATMAKPILDLTRKYQNNPEIIKVAKKELTVDRIEQVF------YEVKPSLKLELM 235

Query: 240 QSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                + N    ++FCN K+       +L  +G    A+HG++ Q  R K+++ F++G  
Sbjct: 236 ARLMNVNNYALSVVFCNTKRMTDEATEALGSRGILAEALHGDLSQAQRDKVMNKFRKGLC 295

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIK 355
            ++VA+D+AARG+D+ +V  VFNFD+P   E+Y+HRIGRTGRAG+ GKA   V  + D  
Sbjct: 296 TVLVATDVAARGIDVDNVEAVFNFDLPLDDESYVHRIGRTGRAGKSGKAINFVTGRRDFG 355

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPP 381
            I  +E+       +    ++ ++PP
Sbjct: 356 KIRDLER-------FTKASIAKMDPP 374


>gi|117921774|ref|YP_870966.1| ATP-dependent RNA helicase SrmB [Shewanella sp. ANA-3]
 gi|117614106|gb|ABK49560.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 419

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 140/368 (38%), Positives = 219/368 (59%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P ++ ++   G++ PT IQ +T+P  L++ D+   A TGTGKTASF+LP L
Sbjct: 1   MQFEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPAL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +++  R      R LIL PTRELA+Q+            L +A++ GG+P+  Q + L
Sbjct: 61  QHLIDFPRRYSGHARILILTPTRELASQIHRYACHLATGQGLNIAIITGGVPYGPQEEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   D+L+ TPGR++++ ++GK    +++IL+IDEADRMLDMGF   ++ I       +Q
Sbjct: 121 KDNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQ 180

Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            +LFSAT+    + + +   L +P  I+V+ P      I H ++        K ALL  L
Sbjct: 181 NMLFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKI-HQWIHLADDKEHKIALLCYL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ +D +K  I+F   +  V +L   L K G     + G+++Q+ R + LS F +G + +
Sbjct: 240 LKQED-VKRAIVFVKTRDVVSSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI D+ HV NFD+P  A++YIHRIGRTGRAG  G A +L    D++ + 
Sbjct: 299 LLATDVAARGIDIDDISHVINFDMPRSADSYIHRIGRTGRAGAKGTAISLAEAHDMRIVG 358

Query: 359 AIEKLIEK 366
            IE+ IE+
Sbjct: 359 KIERYIEQ 366


>gi|34581357|ref|ZP_00142837.1| ATP-dependent RNA helicase RhlE [Rickettsia sibirica 246]
 gi|28262742|gb|EAA26246.1| ATP-dependent RNA helicase RhlE [Rickettsia sibirica 246]
          Length = 410

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 216/364 (59%), Gaps = 13/364 (3%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +  LS +++ A+      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP++    
Sbjct: 3   NFNLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLIDSFI 62

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           K +        LIL PTRELA Q+     K   +Y +  A+LIGG P   Q  +L++   
Sbjct: 63  KNKTTA-----LILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQLKKNPK 117

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG    ++ I   +P  RQ L+FS
Sbjct: 118 VIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFS 177

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQSQ 242
           ATM   +  VS+ +L NP RI V   +  A  I  E   V+   ++S   AL +QL   +
Sbjct: 178 ATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFS---ALTKQLGNRE 234

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            ++   IIF   K++   L   L+ +  +  AIHG++ QR R +++ +F++   ++MVA+
Sbjct: 235 GSV---IIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVAT 291

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +D+    AI++
Sbjct: 292 DVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIRWRAIDR 351

Query: 363 LIEK 366
           L+ K
Sbjct: 352 LVNK 355


>gi|304312547|ref|YP_003812145.1| Putative ATP-dependent RNA helicase, RhlB [gamma proteobacterium
           HdN1]
 gi|301798280|emb|CBL46502.1| Putative ATP-dependent RNA helicase, RhlB [gamma proteobacterium
           HdN1]
          Length = 716

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 157/434 (36%), Positives = 251/434 (57%), Gaps = 20/434 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ L L P++   + + G+   TPIQ + +PL L++ D+ G AQTGTGKTA+F++ ++
Sbjct: 264 LPFSALALDPRLQKGIDELGFSHCTPIQSEALPLSLKQRDIIGKAQTGTGKTAAFLITII 323

Query: 61  -TILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            T+L +     R    PR LIL PTRELA Q+  +     K+ +L +  ++GG+ ++ Q 
Sbjct: 324 QTLLTEPEQEERYNGEPRALILAPTRELALQIEKDALPLLKHTSLNMVSIVGGMDYKKQQ 383

Query: 117 KKLERG-ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           K L+    D+++ TPGR++D F RGK L ++  EILVIDEADRMLDMGFIP ++ +    
Sbjct: 384 KHLQDEIVDIVVGTPGRLID-FVRGKDLFLSETEILVIDEADRMLDMGFIPDVKRLVRET 442

Query: 175 PFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKK 231
           P+   RQTLLFSAT T ++  ++ N+  +P +IE+   S + A   +  ++ T  Q   K
Sbjct: 443 PYKTYRQTLLFSATFTRDIINLASNWTTDPAQIEIEPESVANASVDQKIYIVTAEQ---K 499

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             +L  L+  Q+ +   ++F N++    +L   L+  G  V  + G I Q  R++ L NF
Sbjct: 500 INVLYNLITQQE-LDRVMVFVNRRDETRDLTTRLKALGLRVAMLSGEIPQHKRLRTLENF 558

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G +++MVA+D+A RG+ I  + HV N+ +P   E+Y+HRIGRTGRAG  G + +   +
Sbjct: 559 RNGRLRVMVATDVAGRGIHIEGISHVVNYTLPEDPEDYVHRIGRTGRAGATGTSVSFACE 618

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLN--PPLEKIDIAQHNHA--RKNNPIPQKSTGFD 407
           ED   + AI+ L+ +++   + D   L   P +      +H H   R  +  PQ+  G D
Sbjct: 619 EDAFLLPAIQALLGEEIQCTHPDADLLADLPEIITSQPTEHTHTEHRTEHRRPQRRGGGD 678

Query: 408 R--RKKNYSSQKSH 419
           R    +N +S  SH
Sbjct: 679 RNSHSRNSNSHNSH 692


>gi|153002036|ref|YP_001367717.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS185]
 gi|217974608|ref|YP_002359359.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS223]
 gi|304410566|ref|ZP_07392184.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307304659|ref|ZP_07584409.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|151366654|gb|ABS09654.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|217499743|gb|ACK47936.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
 gi|304351050|gb|EFM15450.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306912061|gb|EFN42485.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 419

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 216/368 (58%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P ++ ++   G+  PT IQ +TIP  L++ D+   A TGTGKTASF+LP L
Sbjct: 1   MQFEDFQLDPSLLESLNAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPSL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +++  R      R LIL PTRELA+Q+            L +A++ GG+P+  Q + L
Sbjct: 61  QHLIDFPRRFAGQARILILTPTRELASQIHRYACHLATGQGLDIAIVTGGVPYGPQEEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+L+ TPGR++++ ++G      ++IL+IDEADRMLDMGF   +Q I       +Q
Sbjct: 121 AGNVDILVATPGRLMEYLDKGNFNAQEVDILIIDEADRMLDMGFSSVVQAIAIEAQGRKQ 180

Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            +LFSAT+    +Q+ +   L +P  I+V  P S    I H ++        K ALL  L
Sbjct: 181 NMLFSATLEGGGVQRFAREVLNDPIEIDVEAPRSEKAKI-HQWIHLADDKEHKFALLCHL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ +D +K  I+F   +  V +L   L K G +   + G+++Q+ R + LS F +G + +
Sbjct: 240 LRQED-VKRTIVFVKTRDIVSSLEGQLLKVGIACAFMRGDMEQKKRFQALSRFTKGEVNV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI D+ HV NFD+P  A+ YIHRIGRTGRAG  G A +L    D++ + 
Sbjct: 299 LLATDVAARGIDIDDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVG 358

Query: 359 AIEKLIEK 366
            IE+ IE+
Sbjct: 359 KIERYIEQ 366


>gi|75906865|ref|YP_321161.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC
           29413]
 gi|75700590|gb|ABA20266.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC
           29413]
          Length = 513

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 207/349 (59%), Gaps = 5/349 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LG+S + V  +   G+  PT IQ + IP +L   DV G +QTGTGKTA+F LP+L
Sbjct: 3   LSFPELGISQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  +  V+    ++L PTRELA QV D   ++  N  L    + GG   + Q  +L+
Sbjct: 63  ERLDPQQKAVQ---AIVLTPTRELAIQVHDAMAQFIGNSGLRTLAIYGGQSIDRQMLQLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++D   RG L ++ ++  V+DEAD ML MGFI  ++ I S  P  RQT
Sbjct: 120 RGVHIVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQERQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++ +   FL++P  + V  P +T   I          ++K  A LQ +L+
Sbjct: 180 ALFSATMPPSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARA-LQPILE 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D  +  +IF   ++    L   L+  G SV   HG++ Q++R ++L+ F+   ++ +V
Sbjct: 239 MEDP-ETALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           A+D+AARGLD+  + HV N+D+P+  E Y+HRIGRTGRAG+ G A TLV
Sbjct: 298 ATDIAARGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAITLV 346


>gi|302038481|ref|YP_003798803.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
 gi|300606545|emb|CBK42878.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
          Length = 442

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 148/387 (38%), Positives = 227/387 (58%), Gaps = 9/387 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+L L+  +   +  AG+  PTPIQ   IPL L+  D+   A+TG+GKT +F++P++
Sbjct: 2   VSFAELSLTSFLADRLQQAGFTAPTPIQSAAIPLALEGRDLLAQAKTGSGKTLAFLIPLI 61

Query: 61  --TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
              + E  K     R PR L+L PTRELA Q+     KY    ++T   + GG+P E   
Sbjct: 62  ERAVKEGWKPAGSARSPRALVLAPTRELALQIEMELRKYAPP-SVTSLAVYGGVPIERHY 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L +   ++I TPGR+LD      L +  IE +V+DEAD+MLD GF+  IQ I  L+P 
Sbjct: 121 RALRQPPMIVIGTPGRLLDVAGTRHLDLRGIEYVVMDEADQMLDRGFLRDIQRILQLLPS 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT + E+  ++E+ L+NP R  V+   +T  TI H +    ++ S +  L+ 
Sbjct: 181 QRQTMLFSATFSPEILTLAESMLKNPARTAVDPGVNTPTTITHAYYVVPSE-SSRVQLIH 239

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LLQS ++    ++FC+QK  V  L   L  +  SV AI GN  Q  R + L+ F+ G +
Sbjct: 240 TLLQSPESGDQSMVFCDQKYKVKRLAARLGGEPASVGAITGNHSQAQRERTLTAFRSGRL 299

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIK 355
           + +VA+D+AARGLD+P V  V ++++P    +Y+HR GRTGRA R G    +++ KE+ +
Sbjct: 300 RTLVATDVAARGLDVPSVSQVIHYELPGNPTSYVHRTGRTGRAERSGATLLILSPKEEHE 359

Query: 356 HIDAIEKL-IEKKVDWLNGDLSSLNPP 381
           ++  + +L I+ K   L   L+ L PP
Sbjct: 360 YLAMVRRLRIQTKRLTLPA-LAVLPPP 385


>gi|224437667|ref|ZP_03658614.1| ATP-dependent RNA helicase DeaD [Helicobacter cinaedi CCUG 18818]
 gi|313144114|ref|ZP_07806307.1| ATP-dependent RNA helicase DeaD [Helicobacter cinaedi CCUG 18818]
 gi|313129145|gb|EFR46762.1| ATP-dependent RNA helicase DeaD [Helicobacter cinaedi CCUG 18818]
          Length = 513

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 140/366 (38%), Positives = 219/366 (59%), Gaps = 7/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL   V+  + +AG+  P+P+Q ++IP+VLQ  D+   AQTGTGKTA+F +P+L  
Sbjct: 20  FETFGLKDFVLKGIKEAGFSSPSPVQAQSIPIVLQGKDLIAQAQTGTGKTAAFSIPILNA 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L    +R +    L++ PTRELA Q+++   K G+   +    + GG   + Q   LE+ 
Sbjct: 80  L----SRNKEIEALVITPTRELAMQISEEVLKLGRFGRIKTICMYGGQSIKRQCDLLEKK 135

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH   G++     +++V+DE+D MLDMGF+  I+ I   +P T QTLL
Sbjct: 136 PKVMIATPGRLLDHLQNGRIENFAPKVVVLDESDEMLDMGFLDDIEEIFKFLPNTHQTLL 195

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++ ++   L  P+ +++     T + IE  +        ++   + +LL++Q
Sbjct: 196 FSATMPEPIKNLALKILDKPEFVKITPTDITNKDIEQQYY--IINEGERDEAIVRLLETQ 253

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  K+ IIF   KK    L   L  +GF   A+HG+++Q  R   +  FKE  I+L+VA+
Sbjct: 254 NPTKS-IIFTRTKKEADALATRLVTKGFKAMALHGDMEQWDRRTAIKAFKENEIELLVAT 312

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI DV HVFN+ +P   E+Y+HRIGRTGRAG+ G A TL    + K +  I++
Sbjct: 313 DVASRGLDISDVSHVFNYHIPLNPESYVHRIGRTGRAGKKGVAITLATPLEYKDLSKIKQ 372

Query: 363 LIEKKV 368
           + + K+
Sbjct: 373 ITKAKL 378


>gi|206974096|ref|ZP_03235014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217959967|ref|YP_002338523.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|229139159|ref|ZP_04267734.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST26]
 gi|206748252|gb|EDZ59641.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217065592|gb|ACJ79842.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|228644218|gb|EEL00475.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST26]
          Length = 454

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 151/416 (36%), Positives = 238/416 (57%), Gaps = 28/416 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ + IP++L   D+ G A+TGTGKT +FVLP   
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLP--- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120
           ILEK        + LI+ PTRELA Q+    +K   +  ++ V  + GG     Q +KL+
Sbjct: 63  ILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLTTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ ++V +   T  TIE   + T    +K  AL  + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMVQVQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN-------PIPQKSTGFDRR 409
           EK              +L  P+++  I Q    R +        P P+KS  + +R
Sbjct: 360 EK--------------TLGAPIQREIIEQPKIKRVDENGKPVPRPAPKKSGEYRQR 401


>gi|255319837|ref|ZP_05361042.1| DEAD/DEAH box helicase [Acinetobacter radioresistens SK82]
 gi|262380369|ref|ZP_06073523.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255303156|gb|EET82368.1| DEAD/DEAH box helicase [Acinetobacter radioresistens SK82]
 gi|262297815|gb|EEY85730.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 618

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 144/378 (38%), Positives = 225/378 (59%), Gaps = 15/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  L   +  A+ D G+  PT +Q + IP  L+  D+   +QTG+GKTA+F+LP L  
Sbjct: 5   FAEFSLHESLTQALTDLGFTAPTAVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64

Query: 63  L----------EKGRARVRMPRTLILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIP 111
           L          E+ RA V  P  L++ PTRELA QV  D          + +A ++GG+P
Sbjct: 65  LADQDTFLPFKERMRA-VTQPNILVISPTRELAQQVCQDAIALVRHMKGVRIAAIMGGMP 123

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           F  Q ++L +GA V++ TPGR+LD  NR ++ ++ ++ L++DEADRMLD+GF   ++ I+
Sbjct: 124 FGKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEADRMLDLGFSEDLEAIS 182

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            L    +QTL+FSAT  D + +++E  +++P RI + T  ST   I      T   +  K
Sbjct: 183 ELALNRKQTLMFSATFADRIIRLAECMMKDPMRIAIETGHSTNTDITQTLHWTDG-FEHK 241

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL   L+ + T+   ++F + +++   L   L + G SV A+HG + Q  R + L + 
Sbjct: 242 KKLLTHWLEDE-TLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 300

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR GKA TL   
Sbjct: 301 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGKAITLATY 360

Query: 352 EDIKHIDAIEKLIEKKVD 369
            +   I A+E  +E +++
Sbjct: 361 RERGKIRALEDYLETRLN 378


>gi|157374029|ref|YP_001472629.1| ATP-dependent RNA helicase SrmB [Shewanella sediminis HAW-EB3]
 gi|157316403|gb|ABV35501.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 408

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 137/368 (37%), Positives = 217/368 (58%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L P ++ ++   G+ KPT IQ + IPL + + D+   A TGTGKTASF+LP L
Sbjct: 1   MQFEDLLLDPILLESLKAMGHHKPTTIQQQAIPLAMDQRDILARAPTGTGKTASFLLPAL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +++  R      R LIL PTRELA+Q+           +    ++ GG+P+  Q   L
Sbjct: 61  QHLIDFPRRFSGQARILILTPTRELASQIHRYASHLASELDFNTVIITGGVPYGPQEDAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   D+L+ TPGR++++ ++G+     +E+LVIDEADRMLDMGF   ++ +       +Q
Sbjct: 121 KGNVDILVATPGRLMEYLDKGQFNAEEVEMLVIDEADRMLDMGFSAAVETLAIESVGRKQ 180

Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           T+LFSAT+   ++ + S   L +P ++E   P S    I H ++        K  LL  +
Sbjct: 181 TMLFSATLEGSDVGRFSHQLLTDPVKVEAEAPRSEKAKI-HQWIHIADNKDHKFNLLCSI 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ ++T K  I+F   ++ V +L   L+K G     + G+++Q+ R + L  F +G + +
Sbjct: 240 LQQEET-KRAIVFVKTREAVASLEGLLQKAGIPCSFMRGDMEQKQRFQALGRFTKGEVNV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+ D+ HV NFD+P  A+ Y+HRIGRTGRAG  G A +LV   DI+ + 
Sbjct: 299 LLATDVAARGIDVDDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDIRVVG 358

Query: 359 AIEKLIEK 366
            IE+ +++
Sbjct: 359 KIERYMDQ 366


>gi|221311883|ref|ZP_03593730.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221316207|ref|ZP_03598012.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221321119|ref|ZP_03602413.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221325403|ref|ZP_03606697.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|255767828|ref|NP_391790.2| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|254763269|sp|P42305|DBPA_BACSU RecName: Full=ATP-dependent RNA helicase dbpA
 gi|225185456|emb|CAB15947.2| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 479

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 135/362 (37%), Positives = 215/362 (59%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  +S  ++ A+   GY +PT +Q   IP  L+R D+   +QTG+GKTASF +P+  +
Sbjct: 4   FKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLCEL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                 +   P+ LIL PTRELA QV ++    G+   +    + G   F+ Q  +L++ 
Sbjct: 64  ANWDENK---PQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQK 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGR+LDH  +G L ++ +  LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 121 SHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTML 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +++K+S  ++QNP+ IEV     T   IEH  +    +   K +LL+ +L ++
Sbjct: 181 FSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREE--NKFSLLKDVLMTE 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  K++V  L   L+  G+    IHG + Q  R  +++ FK G  + +VA+
Sbjct: 239 NP-DSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++  V N+D+P   E+Y+HR GRTGRAG  GKA + V   + + +  IE+
Sbjct: 298 DVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEE 357

Query: 363 LI 364
            I
Sbjct: 358 YI 359


>gi|42522929|ref|NP_968309.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39574125|emb|CAE79302.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 656

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 139/362 (38%), Positives = 217/362 (59%), Gaps = 15/362 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60
           +F   GLS  V+ A+ D G+  PTPIQ + +P++L   +D  G+A TGTGKTA+F +P++
Sbjct: 45  NFESFGLSAPVMAAMADMGFTTPTPIQRQALPILLAGANDFIGLASTGTGKTAAFGIPLI 104

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++   + V+  + L+L PTRELA QVA+     GK   + V  + GG  +  Q   ++
Sbjct: 105 ENID---STVKDTQALVLSPTRELALQVAEQLTLLGKKKGVRVVTIYGGASYRTQIDGIK 161

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL------- 173
           RGA +++ TPGR++D   +  + + +++ +V+DEAD ML MGF   ++ I S        
Sbjct: 162 RGAHIVVATPGRLVDFLEQKMIKLQSVKTVVLDEADEMLSMGFKEALETILSATQPDDSD 221

Query: 174 -VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            V    +T LFSATM+ E+++++  +L+NP+ + VN    TA+TIE  +      Y  K 
Sbjct: 222 SVRAACRTWLFSATMSSEVRRLTSTYLENPETVSVNKVGGTADTIEQVYYTVKNSY--KT 279

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            ++ +LLQ+      GIIFC  K  V  L   L ++GF   ++HG+  Q+ R   L  FK
Sbjct: 280 EVIGRLLQTLPEF-YGIIFCQTKMEVAELADVLTQRGFPADSLHGDKSQQEREATLKKFK 338

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +  ++++VA+D+AARGLDI D+ HV N  +P  +E+Y+HRIGRTGR G+ G A TLV  E
Sbjct: 339 QRQVKVIVATDVAARGLDIKDLTHVVNHSLPWDSESYVHRIGRTGRNGQKGTAITLVNPE 398

Query: 353 DI 354
            +
Sbjct: 399 QL 400


>gi|665989|dbj|BAA11693.1| deaD [Bacillus subtilis]
          Length = 479

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 135/362 (37%), Positives = 215/362 (59%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  +S  ++ A+   GY +PT +Q   IP  L+R D+   +QTG+GKTASF +P+  +
Sbjct: 4   FKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLCEL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                 +   P+ LIL PTRELA QV ++    G+   +    + G   F+ Q  +L++ 
Sbjct: 64  ANWDENK---PQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQK 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGR+LDH  +G L ++ +  LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 121 SHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTML 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +++K+S  ++QNP+ IEV     T   IEH  +    +   K +LL+ +L ++
Sbjct: 181 FSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREE--NKFSLLKDVLMTE 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  K++V  L   L+  G+    IHG + Q  R  +++ FK G  + +VA+
Sbjct: 239 NP-DSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++  V N+D+P   E+Y+HR GRTGRAG  GKA + V   + + +  IE+
Sbjct: 298 DVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEE 357

Query: 363 LI 364
            I
Sbjct: 358 YI 359


>gi|17228718|ref|NP_485266.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
 gi|17130570|dbj|BAB73180.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
          Length = 513

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 207/349 (59%), Gaps = 5/349 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LG+S + V  +   G+  PT IQ + IP +L   DV G +QTGTGKTA+F LP+L
Sbjct: 3   LSFPELGISQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  +  V+    ++L PTRELA QV D   ++  N  L    + GG   + Q  +L+
Sbjct: 63  ERLDPQQKAVQ---AIVLTPTRELAIQVHDAMAQFVGNSGLRTLAIYGGQSIDRQMLQLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++D   RG L ++ ++  V+DEAD ML MGFI  ++ I S  P  RQT
Sbjct: 120 RGVHIVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQDRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++ +   FL++P  + V  P +T   I          ++K  A LQ +L+
Sbjct: 180 ALFSATMPPSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARA-LQPILE 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D  +  +IF   ++    L   L+  G SV   HG++ Q++R ++L+ F+   ++ +V
Sbjct: 239 MEDP-ETALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           A+D+AARGLD+  + HV N+D+P+  E Y+HRIGRTGRAG+ G A TLV
Sbjct: 298 ATDIAARGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAITLV 346


>gi|167574569|ref|ZP_02367443.1| ATP-dependent RNA helicase DbpA [Burkholderia oklahomensis C6786]
          Length = 465

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 145/375 (38%), Positives = 212/375 (56%), Gaps = 14/375 (3%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GYV  TPIQ  ++P+ L  HD+   A+TG+GKTA+F LP+L  L+  R  V+    ++L 
Sbjct: 27  GYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLPLLARLDARRFDVQ---AMVLC 83

Query: 80  PTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QV     +  +   N+ V  L GG P   Q   LE GA +++ TPGRI+DH  
Sbjct: 84  PTRELADQVTQEIRRLARAEENVKVLTLCGGTPMRPQTASLEHGAHIVVGTPGRIMDHLE 143

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           RG L +  +  LV+DEADRMLDMGF   I  +    P  RQTLLFSAT  D + K+S+ F
Sbjct: 144 RGSLALGALNTLVLDEADRMLDMGFFDDIATVARQCPKERQTLLFSATYPDGIAKLSQQF 203

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           L+NPK +++      ++  +  +  T  +      +L    +   T+     FCN K+  
Sbjct: 204 LRNPKEVKLEERHEDSKIRQRFYEVTEDERLHAVGMLLNHYRPVSTLA----FCNTKQQC 259

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA+D+AARGLDI  +  V 
Sbjct: 260 RDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVI 319

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW-----LNG 373
           N DV    E ++HRIGRTGRA + G A +L +  ++  + +IE+  ++ V+W     L  
Sbjct: 320 NVDVTPDPEVHVHRIGRTGRADQDGWALSLASMNEMGRVGSIEQAQKRDVEWHPLAELEA 379

Query: 374 DLSS-LNPPLEKIDI 387
           +  + L PP+E + I
Sbjct: 380 ESDAPLLPPMETLQI 394


>gi|167567410|ref|ZP_02360326.1| ATP-dependent RNA helicase DbpA [Burkholderia oklahomensis EO147]
          Length = 465

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 145/375 (38%), Positives = 212/375 (56%), Gaps = 14/375 (3%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GYV  TPIQ  ++P+ L  HD+   A+TG+GKTA+F LP+L  L+  R  V+    ++L 
Sbjct: 27  GYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLPLLARLDARRFDVQ---AMVLC 83

Query: 80  PTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QV     +  +   N+ V  L GG P   Q   LE GA +++ TPGRI+DH  
Sbjct: 84  PTRELADQVTQEIRRLARAEENVKVLTLCGGTPMRPQTASLEHGAHIVVGTPGRIMDHLE 143

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           RG L +  +  LV+DEADRMLDMGF   I  +    P  RQTLLFSAT  D + K+S+ F
Sbjct: 144 RGSLALGALNTLVLDEADRMLDMGFFDDIATVARQCPKERQTLLFSATYPDGIAKLSQQF 203

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           L+NPK +++      ++  +  +  T  +      +L    +   T+     FCN K+  
Sbjct: 204 LRNPKEVKLEERHEDSKIRQRFYEVTEDERLHAVGMLLNHYRPVSTLA----FCNTKQQC 259

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA+D+AARGLDI  +  V 
Sbjct: 260 RDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVI 319

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW-----LNG 373
           N DV    E ++HRIGRTGRA + G A +L +  ++  + +IE+  ++ V+W     L  
Sbjct: 320 NVDVTPDPEVHVHRIGRTGRADQDGWALSLASMNEMGRVGSIEQAQKRDVEWHPLAELEA 379

Query: 374 DLSS-LNPPLEKIDI 387
           +  + L PP+E + I
Sbjct: 380 ESDAPLLPPMETLQI 394


>gi|329895752|ref|ZP_08271143.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC3088]
 gi|328922182|gb|EGG29538.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC3088]
          Length = 462

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 147/364 (40%), Positives = 212/364 (58%), Gaps = 12/364 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L +SP  + ++   GY   TP+Q ++IPL+L+  D+   A+TG+GKTA+F    + +
Sbjct: 6   FSKLNISPAQLKSLEALGYKAMTPVQEQSIPLILKGRDLVVRAKTGSGKTATF---GIGL 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L K   R    + L+L PTRELA QV     +      N+ V +L GG PF AQ   L+ 
Sbjct: 63  LNKINPRFFGAQALVLCPTRELADQVGAEIRRLASQMPNIKVVMLCGGKPFGAQRDSLQH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI DH  +G L ++ +  LV+DEADRMLDMGF   +Q I + VP  RQTL
Sbjct: 123 GAHVVVGTPGRIHDHLTKGTLQIDQVSTLVLDEADRMLDMGFADTMQAIIAEVPKNRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE-TIEHCF--VATYAQYSKKCALLQQL 238
           LFSAT  D +QK+S +   NP  ++V+   +  E  IE  F  +  + +Y    AL +  
Sbjct: 183 LFSATYPDNIQKISRSIQANPAMVQVDDDVAHEEGVIEQLFFEIKKHERYPTLLALFEHY 242

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  KN  +FCN KK    +   L +      A+HG++DQR R ++L  F  G+  +
Sbjct: 243 -----RPKNAAVFCNTKKQCAEVADFLNEHDIEAKALHGDMDQRERDQVLLQFANGSCPV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  +  V N+++P   E Y+HRIGRTGRAG  G AF+LV + +   + 
Sbjct: 298 LVATDVAARGLDIKSLAMVVNYELPRDPEIYVHRIGRTGRAGETGLAFSLVTESETPRLR 357

Query: 359 AIEK 362
            IE+
Sbjct: 358 QIEQ 361


>gi|15892943|ref|NP_360657.1| ATP-dependent RNA helicase RhlE [Rickettsia conorii str. Malish 7]
 gi|15620136|gb|AAL03558.1| ATP-dependent RNA helicase RhlE [Rickettsia conorii str. Malish 7]
          Length = 414

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 219/370 (59%), Gaps = 15/370 (4%)

Query: 1   MDF--ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           MD+   +  LS +++ A+      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP
Sbjct: 1   MDYIMKNFNLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           ++    K +        LIL PTRELA Q+     K   +Y +  A+LIGG P   Q  +
Sbjct: 61  LIDSFIKNKTTA-----LILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFIQ 115

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG    ++ I   +P  R
Sbjct: 116 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 175

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQ 236
           Q L+FSATM   +  VS+ +L NP RI V   +  A  I  E   V+   ++S   AL +
Sbjct: 176 QVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFS---ALTK 232

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           QL   + ++   IIF   K++   L   L+ +  +  AIHG++ QR R +++ +F++   
Sbjct: 233 QLGNREGSV---IIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNH 289

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++MVA+D+AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +D+  
Sbjct: 290 RIMVATDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIR 349

Query: 357 IDAIEKLIEK 366
             AI++L+ K
Sbjct: 350 WRAIDRLVNK 359


>gi|294139497|ref|YP_003555475.1| ATP-dependent RNA helicase SrmB [Shewanella violacea DSS12]
 gi|293325966|dbj|BAJ00697.1| ATP-dependent RNA helicase SrmB [Shewanella violacea DSS12]
          Length = 408

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 134/368 (36%), Positives = 220/368 (59%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P ++ ++   G+ KPT IQ +TIPL +++ D+   A TGTGKTASF+LP +
Sbjct: 1   MLFEDFLLDPILLESLKAMGHNKPTTIQQQTIPLAMEQKDILARAPTGTGKTASFLLPAI 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +++  R      R L+L PTRELA+Q+         + +L +A++ GG+P+  Q   L
Sbjct: 61  QHLIDFPRRFGGQARVLVLTPTRELASQIHRYASHLSTDLDLDIAIITGGMPYGPQEDAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   D+L+ TPGR++++ ++G      +E+ VIDEADRMLDMGF   ++ +       +Q
Sbjct: 121 KNNVDILVATPGRLMEYLDKGNFNAEEVEVFVIDEADRMLDMGFSAAVETLAIESVGRKQ 180

Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           T+LFSAT+   ++ + S   L NP ++E   P S    I H ++        K A+L  +
Sbjct: 181 TMLFSATLEGSDVGRFSHQLLTNPVKVEAEAPRSEKAKI-HQWIHIADNKEHKFAMLCNI 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ +D  +  I+F   ++ V +L   L+++G     + G+++Q+ R + L  F +G + +
Sbjct: 240 LRQEDVTRT-IVFVKTREGVASLEGLLQREGIICSFMRGDMEQKQRFQALGRFTKGEVNV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+ D+ HV NFD+P  A+ Y+HRIGRT RAG  G A +LV   DI+ + 
Sbjct: 299 LLATDVAARGIDVDDISHVINFDMPRSADTYVHRIGRTARAGAKGTAISLVEAHDIRVVG 358

Query: 359 AIEKLIEK 366
            IE+ I++
Sbjct: 359 KIERYIDQ 366


>gi|168009544|ref|XP_001757465.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691159|gb|EDQ77522.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 452

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 228/392 (58%), Gaps = 13/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+  ++  A    G+  PT IQ+  +P+ L+ HD+ G+AQTG+GKTA+F LP+L  
Sbjct: 21  FRSLGVCEQLAEACDALGWKAPTQIQVDAVPVALKGHDIIGLAQTGSGKTATFALPIL-- 78

Query: 63  LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +A +  P+ L   +L PTRELA Q+A+ FE  G    L  A+L+GGI   AQ+  L
Sbjct: 79  ----QALLENPQPLFACVLSPTRELAIQIAEQFEALGSGIGLKCAVLVGGIDMMAQSVAL 134

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   V++ TPGR++DH    K   +  I+ LV+DEADR+L+M F   I  I  ++P  R
Sbjct: 135 AKRPHVVVGTPGRLVDHLTNTKGFSLRTIKYLVLDEADRLLNMDFEQEIDEILKVIPKER 194

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +T LFSATMT ++ K+    L+NP ++EV+   ST ++++  ++   A+Y K C L+  L
Sbjct: 195 RTYLFSATMTTKVAKLQRACLKNPVKVEVSAKYSTVDSLKQEYLFIPAKY-KDCYLVYIL 253

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             ++      ++F    +    L   L   GF    I G + Q  R+  L+ FK G   +
Sbjct: 254 --NELAGNTAMVFTRTCEATRKLSLVLRNLGFVAIPISGQMSQPKRLGALAKFKAGDCNI 311

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR G+A ++V + D++   
Sbjct: 312 LICTDVASRGLDIPSVNLVINYDIPTNSKDYIHRVGRTARAGRSGRAISMVCQYDVELYQ 371

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
            IE+LI KK+   +     +   LE++  AQ 
Sbjct: 372 KIEELIGKKLPEFSHQQEEVLLMLERVSEAQR 403


>gi|88603077|ref|YP_503255.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei
           JF-1]
 gi|88188539|gb|ABD41536.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei
           JF-1]
          Length = 531

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 139/351 (39%), Positives = 216/351 (61%), Gaps = 11/351 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL LSP ++ A+ D GY +PTPIQ + IPL+L  +DV G A TGTGKTA+F +P + +
Sbjct: 6   FSDLQLSPGIIKAIRDIGYEEPTPIQQEVIPLILAGNDVAGQAYTGTGKTAAFGIPAIEL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
            +     V+   T++L P+RELA QV     K   +   +++  + GG P E Q K L R
Sbjct: 66  CQPANRNVQ---TIVLCPSRELAVQVGTELNKLAMHKKGISILPVYGGQPIERQIKALSR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR++DH  R  LL++ + ++V+DEAD+MLDMGF   I+ I S +P  RQT+
Sbjct: 123 GVQIIIGTPGRVIDHIKRKTLLLDAVSLVVLDEADQMLDMGFREDIEEILSHIPKERQTV 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--QLL 239
           + SAT   E+  +S  F +NP  +++     T   IE  ++    + +K   L++  +  
Sbjct: 183 ILSATFPPEILDISRRFQKNPIDVKMVHQELTVPQIEQYYIEVR-EPAKADTLIRVLEFY 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q Q T    IIFCN +  V  +  +L+ +GF    +HG + Q  R K+++ F++G ++++
Sbjct: 242 QPQRT----IIFCNTQIAVDAVSSALKAEGFLADGLHGGMAQAQRDKVMNAFRKGQLEIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           +A+D+AARG+D+ ++  V NFD P   E Y+HRIGRT RAGR G+A + V+
Sbjct: 298 IATDVAARGIDVEEIDLVCNFDFPQDDEYYVHRIGRTARAGRTGRAISFVS 348


>gi|126173085|ref|YP_001049234.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS155]
 gi|125996290|gb|ABN60365.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 419

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 216/368 (58%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P ++ ++   G+  PT IQ +TIP  L++ D+   A TGTGKTASF+LP L
Sbjct: 1   MQFEDFQLDPSLLESLNAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPSL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +++  R      R LIL PTRELA+Q+            L +A++ GG+P+  Q + L
Sbjct: 61  QHLIDFPRRFAGQARILILTPTRELASQIHRYACHLATGQGLDIAIVTGGVPYGPQEEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+L+ TPGR++++ ++G      ++IL+IDEADRMLDMGF   +Q I       +Q
Sbjct: 121 AGKVDILVATPGRLMEYLDKGNFNAQEVDILIIDEADRMLDMGFSSVVQAIAIEAQGRKQ 180

Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            +LFSAT+    +Q+ +   L +P  I+V  P S    I H ++        K ALL  L
Sbjct: 181 NMLFSATLEGGGVQRFAREVLNDPIEIDVEAPRSEKAKI-HQWIHLADDKEHKFALLCHL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ +D +K  I+F   +  V +L   L K G +   + G+++Q+ R + LS F +G + +
Sbjct: 240 LRQED-VKRTIVFVKTRDIVSSLEGQLLKVGIACAFMRGDMEQKKRFQALSRFTKGEVNV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI D+ HV NFD+P  A+ YIHRIGRTGRAG  G A +L    D++ + 
Sbjct: 299 LLATDVAARGIDIDDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVG 358

Query: 359 AIEKLIEK 366
            IE+ IE+
Sbjct: 359 KIERYIEQ 366


>gi|254508401|ref|ZP_05120522.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
 gi|219548714|gb|EED25718.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
          Length = 417

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 151/370 (40%), Positives = 223/370 (60%), Gaps = 19/370 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADLGL P +V  + +  Y++PTPIQ   IP VL+  D  G A TG+GKTA+F LP+L  
Sbjct: 10  FADLGLIPTLVERLEELEYLQPTPIQSYAIPHVLEGKDFVGGANTGSGKTAAFSLPILQK 69

Query: 62  ILEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-----TVALLIGGIPFE 113
           ILE+G   R+R      LIL PTRELA+QVA N + Y  +Y+L     TVA+  GG+   
Sbjct: 70  ILEQGDSNRSRGNFVSHLILVPTRELASQVAYNVKSY--SYHLRDKVKTVAVF-GGVSVN 126

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  G+D+++ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  I +L
Sbjct: 127 PQMLSLRGGSDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTDELNKILAL 186

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKC 232
           +P  +QTLLFSAT  +++  ++++ L +P  +EV   S+ A T ++  F     +   K 
Sbjct: 187 LPEKKQTLLFSATFPEKVTTLAQHLLSDP--VEVQLQSAEASTLVQRVFSVNKGE---KT 241

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           A+L  L++     +  +IF N K    +L   L K+G +    HG+  Q +R ++L  FK
Sbjct: 242 AVLAHLIKKHQ-WRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFK 300

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G IQ+++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G   +L+  +
Sbjct: 301 SGEIQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYD 360

Query: 353 DIKHIDAIEK 362
           D  H   IEK
Sbjct: 361 DYHHFKVIEK 370


>gi|229587022|ref|YP_002845523.1| ATP-dependent RNA helicase RhlE [Rickettsia africae ESF-5]
 gi|228022072|gb|ACP53780.1| ATP-dependent RNA helicase RhlE [Rickettsia africae ESF-5]
          Length = 410

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 216/364 (59%), Gaps = 13/364 (3%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +  LS +++ A+      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP++    
Sbjct: 3   NFNLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLIDSFI 62

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           K +        LIL PTRELA Q+     K   +Y +  A+LIGG P   Q  +L++   
Sbjct: 63  KNKTTA-----LILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQLKKNPK 117

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG    ++ I   +P  RQ L+FS
Sbjct: 118 VIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPDKRQVLMFS 177

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQSQ 242
           ATM   +  VS+ +L NP RI V   +  A  I  E   V+   ++S   AL +QL   +
Sbjct: 178 ATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFS---ALTKQLGNRE 234

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            ++   IIF   K++   L   L+ +  +  AIHG++ QR R +++ +F++   ++MVA+
Sbjct: 235 GSV---IIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVAT 291

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +D+    AI++
Sbjct: 292 DVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIRWRAIDR 351

Query: 363 LIEK 366
           L+ K
Sbjct: 352 LVNK 355


>gi|332232745|ref|XP_003265564.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Nomascus
           leucogenys]
          Length = 455

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 144/368 (39%), Positives = 222/368 (60%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 26  FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V+I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHVIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++  ++   +++  K   L  +L 
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDTYLVYIL- 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378

Query: 361 EKLIEKKV 368
           E LI KK+
Sbjct: 379 EYLIGKKL 386


>gi|325261674|ref|ZP_08128412.1| ATP-dependent RNA helicase, DEAD/DEAH family [Clostridium sp. D5]
 gi|324033128|gb|EGB94405.1| ATP-dependent RNA helicase, DEAD/DEAH family [Clostridium sp. D5]
          Length = 527

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 140/369 (37%), Positives = 223/369 (60%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL P++V AV   G+ + +PIQ K IP++    D+ G AQTGTGKTA+F +P+L  
Sbjct: 6   FEDLGLCPEIVKAVKKMGFEEASPIQAKAIPVMKSGKDIIGQAQTGTGKTAAFGIPLLEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +E    +++    ++L PTRELA QVA+   N  KY   + + V  + GG     Q + L
Sbjct: 66  IEPKNKKLQ---AVVLCPTRELAIQVAEEIRNLAKY--MHGIKVLPIYGGQEIVTQIRSL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  ++I TPGR++DH  R  + M+ +  +V+DEAD ML+MGF   I+ I   VP  RQ
Sbjct: 121 KSGTQLIIGTPGRVMDHMRRKTIKMDEVHTIVLDEADEMLNMGFREDIETILEGVPEERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   +  +++ F +N + ++V     T   IE  +     +   K  +L +LL
Sbjct: 181 TVLFSATMPQAILDITKRFQKNAEIVKVTKKELTVPNIEQYYYEVKPK--SKEEVLARLL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               + K  ++FCN KK V  L + L  +G+    +HG++ Q+ R +++  F+ G   ++
Sbjct: 239 DIY-SPKLSVVFCNTKKQVDILVNGLLGRGYFAAGLHGDLKQQQRDRVMQGFRSGKTDIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V  VFN+D+P   E Y+HRIGRTGRAGR G++F+ V+ +++  +  
Sbjct: 298 VATDVAARGIDVEEVEAVFNYDLPQDDEYYVHRIGRTGRAGREGRSFSFVSGKEVYKLKE 357

Query: 360 IEKLIEKKV 368
           I++  + K+
Sbjct: 358 IQRYCKTKI 366


>gi|326791684|ref|YP_004309505.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
 gi|326542448|gb|ADZ84307.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
           5427]
          Length = 371

 Score =  263 bits (671), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 146/368 (39%), Positives = 219/368 (59%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LG+SP+++  +  +G   PTPIQ +TIPL+L   DV G AQTGTGKT +F+LP+ 
Sbjct: 1   MNFKTLGISPEMINHLKKSGITIPTPIQDQTIPLILSGKDVIGEAQTGTGKTLAFLLPLF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK  ++    + L+L PTRELA Q+    +K  +   + +  + GG     Q KKL 
Sbjct: 61  ---EKLSSKSPNIQALVLSPTRELAIQITQEAKKLAEAKAIGILPIYGGQDTAMQLKKLG 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++I TPGR+LDH  R  + ++     V+DEAD+ML MGF   +++IT  +P  RQT
Sbjct: 118 KPVHLVIATPGRLLDHIGRKSIDLSKTTTFVLDEADQMLLMGFKNDVESITKQLPKKRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   ++K++  +  +P  + +     T E I    V T  ++ K+ ALLQ L  
Sbjct: 178 LCFSATMDAPVKKLAYRYTSSPTTVTIAKKKITIEAIHQEIVETTDRH-KQAALLQVL-- 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+D     IIFC  K+ V  L  +++ + ++   +H +I Q  R +I+ +FK+G IQ ++
Sbjct: 235 SEDNPYMAIIFCRTKRRVEVLYEAMKDKDYNCVRLHSDILQSKRERIMKSFKKGDIQYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V H++N+DVP   E YIHRIGRTGRAG  G     ++ ++ K +  I
Sbjct: 295 ATDVAARGLDISGVTHIYNYDVPETPEAYIHRIGRTGRAGNDGYTCMFMSPKNEKEVSEI 354

Query: 361 EKLIEKKV 368
           E  I  K+
Sbjct: 355 EAHIRFKI 362


>gi|209527740|ref|ZP_03276235.1| DEAD/DEAH box helicase domain protein [Arthrospira maxima CS-328]
 gi|209491818|gb|EDZ92178.1| DEAD/DEAH box helicase domain protein [Arthrospira maxima CS-328]
          Length = 465

 Score =  263 bits (671), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 146/361 (40%), Positives = 221/361 (61%), Gaps = 6/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+S +    +   G+ +PTP+Q++ IP +L   DV G+AQTGTGKTA+F LP+L  
Sbjct: 5   FESLGISEQRARHLETLGFTEPTPVQVQAIPEMLSGRDVVGMAQTGTGKTAAFSLPILEQ 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++   A ++    L+L PTRELA QV +    +  +  L V  + GG   + Q ++L RG
Sbjct: 65  IDVHAAGIQ---ALVLTPTRELAMQVKEAIRNFSDDNALYVLTVYGGQSIDRQIQRLRRG 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPFTRQTL 181
             V++ TPGRILD  NRG+L ++ +  LV+DEAD ML MGFI  ++ I  S     RQT 
Sbjct: 122 VQVVVGTPGRILDLLNRGELKLDLLRWLVLDEADEMLSMGFIQDVEKILESADSEHRQTA 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   + K+    L++P  ++V TP +T + IE         +SK  AL + +L+ 
Sbjct: 182 FFSATMDPSISKLVRRHLKSPVTVKVETPKATPKRIEQSVYMVPRGWSKARAL-EPILEL 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D  ++ IIF   K++  +L + L+  G SV   HGN++Q  R ++L   +   ++ +VA
Sbjct: 241 EDP-ESAIIFVRTKQSAADLTNQLQAAGHSVDEYHGNLNQSQRERLLMRLRRRQVRWIVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P++ E+Y+HRIGRTGRAGR GKA TL+   D + +  IE
Sbjct: 300 TDIAARGLDVDHLTHVINYDLPDQVESYVHRIGRTGRAGREGKAITLIQSIDRRKLRNIE 359

Query: 362 K 362
           +
Sbjct: 360 R 360


>gi|291562141|emb|CBL40957.1| Superfamily II DNA and RNA helicases [butyrate-producing bacterium
           SS3/4]
          Length = 560

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 132/367 (35%), Positives = 222/367 (60%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L P+++ AV D G+   +PIQ + IP+ ++ HD+ G AQTGTGKTA+F +P+L  
Sbjct: 6   FDELNLDPRILRAVTDMGFEAASPIQAQAIPVEMEGHDMIGQAQTGTGKTAAFGIPLLMK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++      R  + +IL PTRELA QVA+   +  K  + + +  + GG     Q + L+ 
Sbjct: 66  MDPEN---RKTQAMILCPTRELAIQVAEELRRLAKYMSGIKILPVYGGQEIVKQIRSLKG 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH  R  +  + I  +V+DEAD ML+MGF+  ++ I   +P  RQT+
Sbjct: 123 GVQIIVGTPGRVMDHMRRKTIRTDAIHTVVLDEADEMLNMGFLEDMETILGELPEERQTV 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM   + ++++ F ++PK ++V     T   +   +     +   K  ++ +LL  
Sbjct: 183 MFSATMPHAIAQIAQKFQKDPKMVQVVKKELTVPKVTQYYYEVKPR--NKVEVMCRLLDL 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + K  + FCN KK V  L  +L+ +G+    +HG++ Q  R +++ +F+ G  +++VA
Sbjct: 241 Y-SPKLSVAFCNTKKQVDELVQALQGRGYFAEGLHGDLKQEQRDRVMGSFRNGATEILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G+AF+L    ++  +  I+
Sbjct: 300 TDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGRAFSLAVGSEVYKLRDIQ 359

Query: 362 KLIEKKV 368
           +  + K+
Sbjct: 360 RFCKTKI 366


>gi|297582584|ref|YP_003698364.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           selenitireducens MLS10]
 gi|297141041|gb|ADH97798.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
           MLS10]
          Length = 483

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 138/360 (38%), Positives = 215/360 (59%), Gaps = 6/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GLS ++V A+ +     PT +Q + IPL ++  DV   +QTGTGKTAS+ +P+   
Sbjct: 6   FQAFGLSDEIVRALNELNMTMPTDVQKQVIPLAMENKDVLVTSQTGTGKTASYAIPICDT 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    R   P+ LIL PTRELA Q+ ++    G+   +    L G  P   Q  +L++ 
Sbjct: 66  VDWEENR---PQALILSPTRELAVQIQEDITNIGRFRRIKATALYGQEPVNKQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+LDH  +G L++N IE LVIDEAD+MLDMGFI  ++ I + +P  R T L
Sbjct: 123 THVVVGTPGRVLDHIKKGTLMLNRIEHLVIDEADQMLDMGFIDQVEAILASLPKERTTSL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E++ ++   +  P +I +   +  A+TI+   +  +    +K  LLQ +   +
Sbjct: 183 FSATMRNEIRALAGRHMNAPDQIAIKQETVAADTIDQSVI--HVTNKEKLQLLQDVTVVE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + +IFCN +++V  L  SL K+G+    IHG + Q+ R  ++  FK G+ + ++A+
Sbjct: 241 NP-DSCLIFCNTQESVDLLETSLNKEGYRARKIHGGLPQKERFSVMEAFKRGSFRYLIAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           ++AARG+DI  V  V N+DVP   E+Y+HR GRTGRAG+ GKA T V   +   I  +E+
Sbjct: 300 NVAARGIDIDSVSLVINYDVPFEKESYVHRTGRTGRAGKAGKAITFVNNREKSAIRELER 359


>gi|258648289|ref|ZP_05735758.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           tannerae ATCC 51259]
 gi|260852209|gb|EEX72078.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           tannerae ATCC 51259]
          Length = 607

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 140/369 (37%), Positives = 223/369 (60%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG++ ++  A+ + GY  P P+Q + IP +L   +DV  +AQTGTGKTA++ LP   
Sbjct: 4   FEELGVNEEIRRAIAELGYENPMPVQEEVIPYLLGVGNDVIALAQTGTGKTAAYGLP--- 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
           +L+K     R  + +IL PTREL  Q+AD+ + Y +  + L V  + GG   E+Q + L+
Sbjct: 61  VLQKVDPTQRTTQAVILSPTRELCLQIADDLKDYSRYIDGLHVQAVYGGTSIESQIRSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++D   RG   + N+E +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 RGAQVIVATPGRLIDLMERGVAKLENVENVVLDEADEMLNMGFTESIDAILAGVPENRNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM+ E+++++ N+L + K I V + +  AE + H +    A+   K   L++++ 
Sbjct: 181 LFFSATMSREIERIARNYLHDHKEIVVGSRNEGAENVNHTYYLVQAR--DKYHALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +     +  +L K G++  A+HG++ Q  R   +  F++   QL++
Sbjct: 239 YYPKIY-GIIFCRTRLETQEVADALIKDGYNAEALHGDLSQAQRDLTMQKFRQHNTQLLI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  ENYIHR GRTGR G+ G +  ++   +   I  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGMPDDIENYIHRSGRTGRIGKRGASIAIIHLREKGKIRNI 357

Query: 361 EKLIEKKVD 369
           E+ I K+ +
Sbjct: 358 ERTIGKQFE 366


>gi|301311699|ref|ZP_07217624.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           20_3]
 gi|300830259|gb|EFK60904.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           20_3]
          Length = 606

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 220/369 (59%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG++  ++ A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA++ LP   
Sbjct: 4   FEELGVAAPILKAIQEMGYESPMPVQEEVIPFLLGEDNDVIALAQTGTGKTAAYGLP--- 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           IL+K       P+ LIL PTREL  Q+AD+   Y K   NL V  + GG   E+Q K L+
Sbjct: 61  ILQKINVSQYQPQALILCPTRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIESQIKTLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++D  NR  + ++N++ +++DEAD ML+MGF   I  I + +P  R  
Sbjct: 121 RGVHVVVATPGRLIDLMNRKTVDLSNVKNVILDEADEMLNMGFTDSINEILAAIPENRNM 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+  +++ ++++PK I +   +   + I   +    AQ   K   L++L  
Sbjct: 181 LLFSATMPKEIASITKKYMKDPKEIVIGRKNEGNKNIRDIYYMVRAQ--DKYLALKRLAD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L + G++  ++HG + Q  R  ++  F+   IQL+V
Sbjct: 239 YYPNIY-GIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRIKNIQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G A ++    +   I  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGIAISICHVREKGKIREI 357

Query: 361 EKLIEKKVD 369
           E++I KK D
Sbjct: 358 ERIINKKFD 366


>gi|45184660|ref|NP_982378.1| AAL164Cp [Ashbya gossypii ATCC 10895]
 gi|74695973|sp|Q75F95|DRS1_ASHGO RecName: Full=ATP-dependent RNA helicase DRS1
 gi|44980006|gb|AAS50202.1| AAL164Cp [Ashbya gossypii ATCC 10895]
          Length = 734

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 154/384 (40%), Positives = 222/384 (57%), Gaps = 16/384 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  V+  +   GY KP+PIQ  TIP+ L   DV   A TG+GKTA+F++P++  
Sbjct: 221 FNSLSLSRPVLKGLAALGYTKPSPIQGATIPIALLGKDVIAGAVTGSGKTAAFMIPIIER 280

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           L    A++   R L+L PTRELA QVAD  +K GK  + LT  L +GG+    Q + L+ 
Sbjct: 281 LLYKPAKIASTRVLVLTPTRELAIQVADVGKKLGKFVSGLTFGLAVGGLNLRQQEQALKL 340

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGRI+DH  N     ++++E+LVIDEADRML+ GF   +  I SL+P  RQT
Sbjct: 341 RPDIVIATPGRIIDHIRNSASFSVDSVEVLVIDEADRMLEDGFQDELNEIMSLIPSKRQT 400

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++    L+ P RI ++ P   A  +   FV    +   K ALL  LL+
Sbjct: 401 LLFSATMNSRIKQLISLSLKKPVRIMIDPPKQAANKLTQEFVRLRKREHLKPALLYHLLR 460

Query: 241 SQDT--MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             D+   K  ++F  +K+    L   L   G     +HG++ Q  R++ ++NFK   + +
Sbjct: 461 KLDSTGQKRIVVFVARKEVAHRLRVILGLLGMKAGELHGSLTQEQRLQSVNNFKSLDVPV 520

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-------- 350
           +V +DLA+RGLDIP +  V N+D+P   E Y+HR+GRT RAGR GK+ TLV         
Sbjct: 521 LVCTDLASRGLDIPKIEVVINYDMPKTYEIYLHRVGRTARAGREGKSVTLVGESTQERSI 580

Query: 351 -KEDIKHIDAIE---KLIEKKVDW 370
            K+ IK +D  +   +   + VDW
Sbjct: 581 VKDAIKSVDGSKGSGRACGRVVDW 604


>gi|172058976|ref|YP_001815436.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171991497|gb|ACB62419.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 481

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 129/360 (35%), Positives = 215/360 (59%), Gaps = 6/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS  ++ A+   GY  PT +Q   IP+ L   D+   ++TG+GKTASF +P+  +
Sbjct: 6   FTDFQLSTPILEAIEQLGYHTPTDVQQAVIPVALSEKDIIVKSRTGSGKTASFGIPLCEL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ LIL PTRELA QV ++    G+   +    + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALILTPTRELALQVTEDVMNIGRYKRIKATAVFGKQPFRGQVAELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  RG L +  ++ LV+DEAD ML+MGF+  +  I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHLERGTLSLEKVKYLVLDEADEMLNMGFLDQVDTILKQLPKQRTTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT   ++ ++S+ ++Q+PK++E+ T ++    IEH ++    +   K A+L+ +   +
Sbjct: 183 FSATFPQDIHQLSDRYMQSPKQVEITTKATEIAEIEHSYIKVTDK--TKFAVLKDVTVVE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     +IFC  K++V  +   L    + V  IHG ++Q  R+ ++  F+ G  + +VA+
Sbjct: 241 NP-DRCMIFCRTKEHVDFVAQGLASMDYPVEKIHGGMEQDERLAVMKAFRAGEFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV  +D+P   E+Y+HR GRTGRAG  GKA +LV + D++ +  +E+
Sbjct: 300 DVAARGIDIENITHVIQYDMPVEKESYVHRTGRTGRAGALGKAISLVTESDMRRLREVEQ 359


>gi|255564033|ref|XP_002523015.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223537737|gb|EEF39357.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 956

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 135/342 (39%), Positives = 205/342 (59%), Gaps = 2/342 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G  P+++  + DAG++ PTPIQ +T P+ L+  D+  IA+TG+GKT  +++P   +
Sbjct: 490 FEASGFPPEILNDIRDAGFLAPTPIQAQTWPIALRNRDIVAIAKTGSGKTLGYLIPAFIL 549

Query: 63  LEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + R   +  P  L+L PTRELA Q+ D   K+G++  ++   L GG P   Q K+L R
Sbjct: 550 LRQCRNNPQNGPTVLVLAPTRELATQIQDEVIKFGRSSRVSCTCLYGGAPKGPQLKELTR 609

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GAD+++ TPGR+ D     K+    + +LV+DEADRMLDMGF P I+ I + +P  RQTL
Sbjct: 610 GADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTL 669

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +++AT   E++K++ + L NP ++ + +    A               +K + L Q+L++
Sbjct: 670 MYTATWPKEVRKIANDLLVNPVQVNIGSVDELAANKSITQYVEVVPQMEKESRLGQILRA 729

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q+     IIFC+ K+    L  S+  Q F   AIHG+  Q  R  +L+ F+ G   ++VA
Sbjct: 730 QERGSKVIIFCSTKRLCDQLARSIGHQ-FGAAAIHGDKSQGERDWVLNQFRSGKSPILVA 788

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           +D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G
Sbjct: 789 TDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATG 830


>gi|189464961|ref|ZP_03013746.1| hypothetical protein BACINT_01305 [Bacteroides intestinalis DSM
           17393]
 gi|189437235|gb|EDV06220.1| hypothetical protein BACINT_01305 [Bacteroides intestinalis DSM
           17393]
          Length = 659

 Score =  262 bits (670), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 137/368 (37%), Positives = 226/368 (61%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
           +F +LGLSP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++
Sbjct: 3   NFEELGLSPEIRRAIEEMGYECPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
              +K   + R+P++LIL PTREL  Q+A +   Y K    L V  + GG   ++Q + L
Sbjct: 63  ---QKINVKNRIPQSLILCPTRELCLQIAGDLNDYSKYITGLRVLPVYGGSSIDSQIRAL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G  +++ TPGR+LD   R  + +  I+ +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KQGVHIIVATPGRLLDLMERKTVSLTTIQNVVMDEADEMLNMGFTDSINAILADVPQERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+ +L++ K I +   + +   ++H     +A+   K A L++++
Sbjct: 180 TLLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVVFTVHAK--DKYAALKRIV 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +  GIIFC  +K    +   L + G++  ++HG + Q  R  ++  F+   +Q++
Sbjct: 238 DYYPQIY-GIIFCRTRKETQEIADKLMQDGYNADSLHGELSQAQRDAVMQKFRIRNLQIL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRE 356

Query: 360 IEKLIEKK 367
           IE++I KK
Sbjct: 357 IERIISKK 364


>gi|268318337|ref|YP_003292056.1| DEAD/DEAH box helicase domain-containing protein [Rhodothermus
           marinus DSM 4252]
 gi|262335871|gb|ACY49668.1| DEAD/DEAH box helicase domain protein [Rhodothermus marinus DSM
           4252]
          Length = 505

 Score =  262 bits (670), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 138/347 (39%), Positives = 210/347 (60%), Gaps = 10/347 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ +  P+Q +T+P +L+  DV   +QTG+GKT +F+LP+   L+  R +V+    LIL 
Sbjct: 57  GWTELMPVQRRTLPYLLEGRDVIVQSQTGSGKTGAFLLPLFERLDPSRGQVQ---ALILT 113

Query: 80  PTRELAAQVADNFEKYGKNYN----LTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           PTRELA Q+++ FE+     +    L   L+ GG+ +  Q K LE+GA V+I TPGRILD
Sbjct: 114 PTRELARQISEAFEQMKTGVSGAQSLRAVLVYGGVRYGPQLKALEQGAQVVIGTPGRILD 173

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
              RG L +  +++LV DEAD ML MGF P ++ +   +P  R T +FSATM   +Q ++
Sbjct: 174 LIERGALRLGALQVLVFDEADEMLSMGFYPAMRQLKRYLPRERNTAMFSATMPPRVQALA 233

Query: 196 ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
             FL++P  + ++T    AETIEH +        K  AL+Q  L   +  ++ IIF N K
Sbjct: 234 REFLKDPAFVSLSTDRIAAETIEHRYFIV-PPMEKDRALVQ--LIELENPESAIIFANTK 290

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           ++V  L   L+  G++  AI G++ Q+ R +I+   ++G ++L+VA+D+AARG+DI D+ 
Sbjct: 291 RDVEYLGQFLKNYGYNADAITGDLPQKQRERIMDRLRKGQLRLLVATDVAARGIDISDLS 350

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           HVF +DVP   E Y+HR GRTGR G+ G    LV   +   + AI +
Sbjct: 351 HVFMYDVPQDPEYYVHRSGRTGRVGKEGTTIVLVTPLEEARLRAIAR 397


>gi|167908511|ref|ZP_02495716.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei NCTC
           13177]
          Length = 435

 Score =  262 bits (670), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 146/371 (39%), Positives = 213/371 (57%), Gaps = 16/371 (4%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84
           TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  L+  R  V+    L+L PTREL
Sbjct: 2   TPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARRFDVQ---ALVLCPTREL 58

Query: 85  AAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           A QVA    +  +   N+ V  L GG P   Q + LE GA +++ TPGRI+DH +RG L 
Sbjct: 59  ADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPGRIMDHLDRGHLT 118

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           ++ +  LV+DEADRMLDMGF   I  +    P TRQTLLFSAT  D + K+S+ FL++PK
Sbjct: 119 LDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGIAKLSQQFLRHPK 178

Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
           R+++      ++  +  +  T  +      LL    +   T    I FCN K+   +L  
Sbjct: 179 RVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVST----IAFCNTKQQCRDLLD 234

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
            L  QGF   A+HG ++QR R ++L  F   +  ++VA+D+AARGLDI  +  V N DV 
Sbjct: 235 VLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQLEAVINVDVT 294

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW-------LNGDLS 376
              E Y+HRIGRTGRA + G A +L +  ++  +  IE+ + ++V+W         GD +
Sbjct: 295 PDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLAELKAGGD-A 353

Query: 377 SLNPPLEKIDI 387
            L P +E + I
Sbjct: 354 PLLPSMETLQI 364


>gi|326201867|ref|ZP_08191737.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325987662|gb|EGD48488.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 481

 Score =  262 bits (670), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 138/369 (37%), Positives = 224/369 (60%), Gaps = 12/369 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS +++ A+    +  PT +Q K IP V+++ D+   +QTG+GKTA+F +P+  +
Sbjct: 5   FIDYKLSNEILKAISMLNFKSPTKVQEKVIPAVIEKKDIIVKSQTGSGKTAAFAVPICEL 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   L V+ + G  PF  Q K+L++ 
Sbjct: 65  VEWDENK---PQALVLTPTRELAIQVKEDIFNIGRFKRLKVSAIYGKSPFYNQEKELKQK 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGRI+DH  R     +NI+ LVIDEAD ML MGFI  I+ I S +   R T+L
Sbjct: 122 THVVVGTPGRIIDHIERNTFDTSNIKYLVIDEADEMLHMGFIEQIETIVSSLSKERVTVL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  +++ +   +++ P R+E+   ++T + +         +Y  + A   +LL+  
Sbjct: 182 LSATMPIDIETLCNKYMKEPIRVEIEEQNTTTDRVHQ------ERYDVERASKIKLLRDI 235

Query: 243 DTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++N    IIFCN K+ V ++   L    +S   IHG +DQR R+K++++FK G  + +
Sbjct: 236 TIVENPDSCIIFCNTKQKVDDVYDRLLLFKYSCEKIHGGMDQRDRLKVMNDFKRGYFRYL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI ++  V N+D+P   E Y+HRIGRTGR GR GKA + V +++ K+++ 
Sbjct: 296 IATDVAARGIDIDNISLVINYDIPQDGETYVHRIGRTGRIGRDGKAISFVTEDESKYLND 355

Query: 360 IEKLIEKKV 368
           I + I K++
Sbjct: 356 INQYIGKEI 364


>gi|218676922|ref|YP_002395741.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus LGP32]
 gi|218325190|emb|CAV27104.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 468

 Score =  262 bits (670), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 140/368 (38%), Positives = 222/368 (60%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ + L P+++  +   GY + TPIQ  ++P +L   DV G  +TG+GKTA+F L +L  
Sbjct: 15  FSSIALKPELLNTLDSLGYTEMTPIQALSLPTILDGKDVIGQGKTGSGKTAAFGLGVLQN 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA       +  +N+ V  L GG+P   Q   LE 
Sbjct: 75  LRVKRFRVQ---SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH 131

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH  R ++ ++ +  LV+DEADRML+MGF   +  +    P  RQTL
Sbjct: 132 GAHILVGTPGRILDHLERDRIDLSELNTLVLDEADRMLEMGFQDALDAVIEAAPKDRQTL 191

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   +++ V++  + NP+ ++V + +    +I+  F       ++  AL   LL  
Sbjct: 192 LFSATFPKQIKSVADRIMNNPEMVKVES-THDHSSIQQHFYKVEGTEARDDALELMLLHH 250

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ ++FCN KK V N+   L  +GFSV  +HG+++QR R + L  F   TI ++VA
Sbjct: 251 QP--ESAVVFCNTKKEVQNVNDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G A +  +++++  +  I+
Sbjct: 309 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAISFFSEKEMHRVAQID 368

Query: 362 KLIEKKVD 369
           + ++  ++
Sbjct: 369 EYMDMPIE 376


>gi|259506519|ref|ZP_05749421.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
 gi|259165939|gb|EEW50493.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
          Length = 424

 Score =  262 bits (670), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 148/383 (38%), Positives = 217/383 (56%), Gaps = 15/383 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPT-PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG++ ++  A LDA  ++ T  IQ  T+P+ L  HD+ G A+TG GKT  F +P+L 
Sbjct: 10  FTELGVAAEITDA-LDALGIRHTFAIQEYTLPIALDGHDLIGQARTGMGKTYGFGVPLLD 68

Query: 62  -ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            + +          PR L++ PTRELA QV ++ E+   N  L V    GG P+E Q   
Sbjct: 69  RVFDSADIEEIDGTPRALVIVPTRELAVQVGEDLERAAVNLPLKVFTFYGGTPYEEQIDA 128

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G DV++ TPGR+LD + RG L ++ + ILV+DEAD MLD+GF+P I+ I   +    
Sbjct: 129 LETGVDVVVGTPGRLLDLYQRGALRLDKVAILVLDEADEMLDLGFLPDIEKIMRALTHKH 188

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATM   +  ++ +FL  P  I   +  S A       +   A    K A+  ++
Sbjct: 189 QTMLFSATMPGPILTLARSFLDKPVHIRAESADSAATHATTRQIVFQAHRMDKEAVTARI 248

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ++   K  IIF   K+    +   L  +GF+V ++HG++ Q +R + L+ F+ G I +
Sbjct: 249 LQARGRGKT-IIFARTKRTAAQVAEDLAARGFTVGSVHGDMGQPARERSLNAFRSGKIDI 307

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI DV HV N+  P+    Y+HRIGRTGRAG  G A TLV  +++    
Sbjct: 308 LVATDVAARGIDIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGTAVTLVGYDELLKWT 367

Query: 359 AIEKLIEKKVDWLNGDLSSLNPP 381
           AI   +E         L   NPP
Sbjct: 368 AINNELE---------LGQPNPP 381


>gi|293610799|ref|ZP_06693099.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827143|gb|EFF85508.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 639

 Score =  262 bits (670), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 144/377 (38%), Positives = 227/377 (60%), Gaps = 15/377 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP L  
Sbjct: 28  FAEFSLHETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 87

Query: 63  L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111
           L          E+ +A V  P  L+L PTRELA QV+ +   + ++   + +A ++GG+P
Sbjct: 88  LAGQETFVPFKERMKA-VTQPNILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 146

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           F  Q ++L +GA V++ TPGR+LD  NR +L ++ +E L++DEADRMLD+GF   ++ I+
Sbjct: 147 FGKQIQQL-KGAQVIVATPGRLLDLVNRRQLKLDKVEALIVDEADRMLDLGFSEDLEAIS 205

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            L    RQTL+FSAT  D + +++E  +  P+RI + T  ST   I      T     KK
Sbjct: 206 DLAGNRRQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 265

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L   L  + +T+   ++F + +++   L   L + G SV A+HG + Q  R + L + 
Sbjct: 266 KLLTHWL--ADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 323

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL   
Sbjct: 324 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATY 383

Query: 352 EDIKHIDAIEKLIEKKV 368
            +   I A+E  ++ ++
Sbjct: 384 RERGKIRALEDYLDARL 400


>gi|260777558|ref|ZP_05886451.1| ATP-dependent RNA helicase DbpA [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605571|gb|EEX31856.1| ATP-dependent RNA helicase DbpA [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 458

 Score =  262 bits (670), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 144/364 (39%), Positives = 220/364 (60%), Gaps = 7/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L  +++  +    Y + TPIQ + +P+VL+  DV G  +TG+GKTA+F L +L+ 
Sbjct: 5   FKSLNLRSELIETLNSLNYTEMTPIQQQALPIVLEGKDVIGQGKTGSGKTAAFTLGLLSN 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   TL+L PTRELA QVA       +  +N+ V  L GG+P   Q   LE 
Sbjct: 65  LSVKRFRVQ---TLVLCPTRELADQVAKEVRTLARGIHNIKVLTLCGGMPMGPQIGSLEH 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH ++G++ +  +  LV+DEADRML+MGF   I  I    P  RQTL
Sbjct: 122 GAHILVGTPGRILDHLSKGRINLAEMNTLVLDEADRMLEMGFEEAIDAIIDEAPQDRQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++ ++   +++P+ I+V +   T  TIE  F    A   +  AL   LL  
Sbjct: 182 LFSATFPKNIESLASKVMRDPQMIKVESTHQTT-TIEQRFYKLNATEERDDALEALLLTH 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   ++ ++FCN KK V  +   L  +GFSV  IHG+++QR R + L+ F   ++ ++VA
Sbjct: 241 KP--ESSVVFCNTKKEVQKVTDELSHRGFSVVEIHGDMEQREREQALTMFANKSVSILVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+  ++++   +  I+
Sbjct: 299 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAFSFYSEKEEYRVARID 358

Query: 362 KLIE 365
           + ++
Sbjct: 359 EYMD 362


>gi|331224537|ref|XP_003324940.1| ATP-dependent rRNA helicase RRP3 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309303930|gb|EFP80521.1| ATP-dependent rRNA helicase RRP3 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 521

 Score =  262 bits (670), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 152/416 (36%), Positives = 237/416 (56%), Gaps = 16/416 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL P++  A     Y +PTPIQ ++IP  L+  D+ G+AQTG+GKTA+F LP+L  
Sbjct: 77  FEELGLIPELCEACRTLNYKRPTPIQAESIPYALEDRDIIGLAQTGSGKTAAFALPVLQS 136

Query: 63  LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L         P+     +L PTRELA Q++  F+  G    +  A+++GGI   +Q   L
Sbjct: 137 LWND------PKPFFCCVLAPTRELAYQISQQFDALGSTIGVKTAVIVGGIDMMSQAIAL 190

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +++ TPGR+ DH    K   + N++ L++DEADR+LDM F P I  I  ++P  R
Sbjct: 191 SKRPHIIVATPGRLHDHLENTKGFSLRNLKYLIMDEADRLLDMDFGPVIDKILKVIPRER 250

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +T LFSATMT ++ K+    L +P +++++T   T + +   ++  +  +  K A L  L
Sbjct: 251 RTYLFSATMTTKVAKLQRASLVSPVKVQMSTKYDTVDGLVQLYM--FFPFKNKDAYLVYL 308

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + ++ + K+ IIF     +   L   L   GF    +HG + Q +R+  L+ FK G   +
Sbjct: 309 V-NELSGKSMIIFTRTVYDANRLSIILRLLGFPSIPLHGQLSQSTRLSSLNQFKSGNRSI 367

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA TLV + D++ + 
Sbjct: 368 LVATDVASRGLDIPTVDCVINFDLPTNSKDYIHRVGRTARAGRSGKAVTLVTQYDVELLQ 427

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK---NNPIPQKSTGFDRRKK 411
            IE +I KK++    D   +    E++  A     R+   N     K +G  RRK+
Sbjct: 428 RIEGVIGKKMEEFPHDKEQVFLLSERVGEASREATREIRDNERNGGKKSGKFRRKR 483


>gi|317181556|dbj|BAJ59340.1| ATP-dependent RNA helicase [Helicobacter pylori F57]
          Length = 492

 Score =  262 bits (670), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 82  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +   + T   I   F        ++   + +LL +Q
Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374

Query: 363 LIEKKVDWL 371
            I+ K++  
Sbjct: 375 EIDSKIELF 383


>gi|255561546|ref|XP_002521783.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223538996|gb|EEF40593.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 714

 Score =  262 bits (670), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 140/368 (38%), Positives = 206/368 (55%), Gaps = 25/368 (6%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK-- 65
           L+P+++ AV  AGY KP+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPMLT + +  
Sbjct: 301 LTPELLKAVERAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 360

Query: 66  ---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                     P  +++ PTRELA Q+ D   K+     + V  ++GG   E Q  ++ +G
Sbjct: 361 PMSEDNEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG 420

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177
            +V+I TPGR+LD   R   ++N    +V+DEADRM+DMGF P +  +   +P +     
Sbjct: 421 CEVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPE 480

Query: 178 ------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
                       R T +FSATM   +++++  +L+NP  + + T     + I    +   
Sbjct: 481 NEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVNIGTAGKATDLISQHVIMV- 539

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            + S+K   LQ+LL      K  I+F N KKN   +  +L+K  + V  +HG   Q  R 
Sbjct: 540 -KESEKFFKLQRLLDEAGD-KTAIVFVNTKKNADTVAKNLDKAKYRVTTLHGGKSQEQRE 597

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L  F+     ++VA+D+A RG+DIPDV HV N+D+P   E Y HRIGRTGRAG+ G A
Sbjct: 598 ISLEGFRTKKYTVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKSGVA 657

Query: 346 FTLVAKED 353
            T +   D
Sbjct: 658 TTFLTLHD 665


>gi|150009493|ref|YP_001304236.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503]
 gi|256838225|ref|ZP_05543735.1| ATP-dependent RNA helicase [Parabacteroides sp. D13]
 gi|149937917|gb|ABR44614.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503]
 gi|256739144|gb|EEU52468.1| ATP-dependent RNA helicase [Parabacteroides sp. D13]
          Length = 610

 Score =  262 bits (670), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 220/369 (59%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG++  ++ A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA++ LP   
Sbjct: 4   FEELGVAAPILKAIQEMGYESPMPVQEEVIPFLLGEDNDVIALAQTGTGKTAAYGLP--- 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           IL+K       P+ LIL PTREL  Q+AD+   Y K   NL V  + GG   E+Q K L+
Sbjct: 61  ILQKINVSQYQPQALILCPTRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIESQIKTLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++D  NR  + ++N++ +++DEAD ML+MGF   I  I + +P  R  
Sbjct: 121 RGVHVVVATPGRLIDLMNRKTVDLSNVKNVILDEADEMLNMGFTDSINEILAAIPENRNM 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+  +++ ++++PK I +   +   + I   +    AQ   K   L++L  
Sbjct: 181 LLFSATMPKEIASITKKYMKDPKEIVIGRKNEGNKNIRDIYYMVRAQ--DKYLALKRLAD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L + G++  ++HG + Q  R  ++  F+   IQL+V
Sbjct: 239 YYPNI-YGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRIKNIQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G A ++    +   I  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGIAISICHVREKGKIREI 357

Query: 361 EKLIEKKVD 369
           E++I KK D
Sbjct: 358 ERIINKKFD 366


>gi|331011364|gb|EGH91420.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 442

 Score =  262 bits (670), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 143/371 (38%), Positives = 217/371 (58%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               +E  +      R L+L PTRELA QV ++  +Y ++  L+     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  I V+  +  A +++   V       +K  L   L
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIGVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++        ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVD 369
           AIE L  + ++
Sbjct: 358 AIEVLTRQTLE 368


>gi|296161858|ref|ZP_06844659.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295887877|gb|EFG67694.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 467

 Score =  262 bits (670), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 219/392 (55%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P  +  +   GYV+ TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 11  FSQLSLPPATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+    R    + ++L PTRELA QV     +  +   N+ V  L GG P   Q   LE 
Sbjct: 71  LD---VRNFAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  RG L + ++  LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 128 GAHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVKQCPKERQTL 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K+S+ FL+NPK +++       +  +  +  T  +      LL    + 
Sbjct: 188 LFSATYPEGIVKLSQQFLRNPKEVKLAERHDNTKIRQRFYEVTEDERLHAVGLLLNHYRP 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+     FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 248 VSTLA----FCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L +  ++  + ++E
Sbjct: 304 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMSEMGRVGSLE 363

Query: 362 KLIEKKVDWLN-GDLSS-----LNPPLEKIDI 387
           +  ++ V+W    +L++     L PP+E + I
Sbjct: 364 QAQKRDVEWHKLSELTATSNERLLPPMETLQI 395


>gi|73996626|ref|XP_863183.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 10 [Canis familiaris]
          Length = 812

 Score =  262 bits (670), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 152/418 (36%), Positives = 230/418 (55%), Gaps = 43/418 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L T
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLLT 452

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E+     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q  +L  
Sbjct: 453 LIEES---DQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRM 509

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT---- 177
           G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P +    
Sbjct: 510 GCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKP 569

Query: 178 ----------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
                                 RQT++F+ATM   +++++ ++L+ P  + + +     E
Sbjct: 570 DTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHE 629

Query: 216 TIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK G++ C
Sbjct: 630 RVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKMGYNAC 684

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHRI
Sbjct: 685 TLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRI 744

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
           GRTGRAG+ G A T + KED      +++ I      L   +SS  P L     AQH 
Sbjct: 745 GRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHK 796


>gi|328771154|gb|EGF81194.1| hypothetical protein BATDEDRAFT_87448 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 445

 Score =  262 bits (670), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 140/363 (38%), Positives = 219/363 (60%), Gaps = 7/363 (1%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           G+ P+++ A    G+ KP+ IQ  +IP+ L   D+ G+AQTG+GKTA+F LP+L  L   
Sbjct: 17  GIIPELIEACTTLGFKKPSDIQCASIPVALTGRDIIGLAQTGSGKTAAFALPILQTL--- 73

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
            A  +     ++ PTRELA Q+++ FE  G    +  A+++GG+   +Q+  L +   V+
Sbjct: 74  FANPQHLYACVIAPTRELAFQISEQFEALGSVIGVRCAVIVGGMDMMSQSIALSKKPHVI 133

Query: 127 ICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           ICTPGR++DH    K   + +++ LV+DEADR+LD+ F   I+ +  ++P  R T LFSA
Sbjct: 134 ICTPGRLVDHLENTKGFNLKHLKYLVMDEADRLLDLDFGAEIEKVLKVIPRERNTYLFSA 193

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           TMT +++K+    L NP ++EV T  ST +T+   +  T+  Y +K   L  LL ++ + 
Sbjct: 194 TMTSKVEKLQRASLVNPVKVEVATKYSTVDTLLQYY--TFFPYKQKECYLTYLL-NELSG 250

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
           +  I+F     +   L   L   GF    +HG + Q  R+  L+ FK G   +++A+D+A
Sbjct: 251 QTCIVFTLTCASTQKLALMLRNLGFEAVCLHGQLTQPKRLGALAKFKSGGRNILIATDVA 310

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLDIP V  V N+DVP  +++YIHR+GRT RAGR GK+ TLV + D++    IE  I+
Sbjct: 311 SRGLDIPGVDVVINYDVPQSSKDYIHRVGRTARAGRSGKSITLVTQYDVEWYQRIEHAIQ 370

Query: 366 KKV 368
           KK+
Sbjct: 371 KKL 373


>gi|283457687|ref|YP_003362273.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133688|dbj|BAI64453.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 574

 Score =  262 bits (670), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 139/371 (37%), Positives = 213/371 (57%), Gaps = 9/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD G+   +  A+   G   P PIQ  T+P+ L   D+ G A+TGTGKT  F LP +  
Sbjct: 16  FADFGVRQDISDALAAVGITSPFPIQELTLPVALSGQDIIGQAKTGTGKTLGFGLPTIQR 75

Query: 63  L----EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    ++G A +  P   + LIL PTRELA QV ++     K  N  VA L GG+P E Q
Sbjct: 76  VVGRDDEGWADLEYPGAPQALILVPTRELAIQVGEDLAIAAKLRNARVATLYGGVPIEPQ 135

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L RG +V++ TPGRI+D + +G L +  ++I+V+DEAD MLD+GF P ++ I S +P
Sbjct: 136 AELLRRGLEVVVGTPGRIIDLYQQGFLNLKQVKIVVLDEADEMLDLGFQPSVEKILSYLP 195

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCAL 234
             RQ++LFSATM   +  ++  ++  P RI    P   ++T        Y A +  K  +
Sbjct: 196 EDRQSMLFSATMPGPVIAMARQYMTKPMRISAADPEDASKTKASIRQVVYRAHHLDKDEM 255

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + ++L++    +  +IF   K++   +   L  +GF+   +HG+++Q +R + L  F+ G
Sbjct: 256 IGRILRATGRGRT-VIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRTG 314

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N  VP   + Y+HR GRTGRAG  G A TLV  +D+
Sbjct: 315 KVDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNEGTAVTLVDWDDL 374

Query: 355 KHIDAIEKLIE 365
                I   +E
Sbjct: 375 PRWKVINDALE 385


>gi|86145730|ref|ZP_01064059.1| ATP-dependent RNA helicase DbpA [Vibrio sp. MED222]
 gi|85836429|gb|EAQ54558.1| ATP-dependent RNA helicase DbpA [Vibrio sp. MED222]
          Length = 459

 Score =  262 bits (670), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 140/368 (38%), Positives = 222/368 (60%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ + L P+++  +   GY + TPIQ  ++P +L   DV G  +TG+GKTA+F L +L  
Sbjct: 6   FSSIALKPELLNTLDSLGYTEMTPIQALSLPTILDGKDVIGQGKTGSGKTAAFGLGVLQN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA       +  +N+ V  L GG+P   Q   LE 
Sbjct: 66  LRVKRFRVQ---SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH  R ++ ++ +  LV+DEADRML+MGF   +  +    P  RQTL
Sbjct: 123 GAHILVGTPGRILDHLERDRIDLSELNTLVLDEADRMLEMGFQDALDAVIEAAPKDRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   +++ V++  + NP+ ++V + +    +I+  F       ++  AL   LL  
Sbjct: 183 LFSATFPKQIKSVADRIMNNPEMVKVES-THDHSSIQQHFYKVEGTEARDDALELMLLHH 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ ++FCN KK V N+   L  +GFSV  +HG+++QR R + L  F   TI ++VA
Sbjct: 242 QP--ESAVVFCNTKKEVQNVNDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G A +  +++++  +  I+
Sbjct: 300 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAISFFSEKEMHRVAQID 359

Query: 362 KLIEKKVD 369
           + ++  ++
Sbjct: 360 EYMDMPIE 367


>gi|332978229|gb|EGK14960.1| ATP-dependent RNA helicase RhlE [Psychrobacter sp. 1501(2011)]
          Length = 383

 Score =  262 bits (670), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 142/376 (37%), Positives = 233/376 (61%), Gaps = 15/376 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DL LS  V+ +V + G+ + TPIQ K +P  L   D  G AQTGTGKTA+F++ ++  
Sbjct: 7   FDDLALSESVLKSVKELGFTRLTPIQAKILPHTLAGQDAIGQAQTGTGKTATFLITIIEA 66

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +L++  A   M     PR +IL PTRELA Q+ ++     ++ +L    ++GG+ +E Q 
Sbjct: 67  LLKRPFAADEMRYLGEPRAVILAPTRELANQIFEDAIGLTQHTDLHSVCIMGGVDYEKQT 126

Query: 117 KKLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             L+    D+LI TPGR++D  ++G + ++ +E  V+DEADRMLDMGFIP I+ +   +P
Sbjct: 127 AALDHAFTDILIATPGRLIDLIHKGHVFLDRVEAFVLDEADRMLDMGFIPDIKRLMRYMP 186

Query: 176 FT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKC 232
               RQ+LLFSAT   ++  ++  +L NP  +E+     T++ +E H ++ T    S K 
Sbjct: 187 ANTDRQSLLFSATFNQDVMNLAYQWLSNPVFVEIKPEHKTSDLVEQHFYLLTE---SDKF 243

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L ++L ++DT K  I+F N+K  V  L + L  +  +V  + G++DQ  R + L NFK
Sbjct: 244 KALNRILMAEDTHKV-IVFANRKDQVKRLYNRLSAE-HNVVMLSGDVDQSKRERYLDNFK 301

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G  +++VA+D+A RG+ + D+ HV N+ +P++ ++Y+HRIGRTGRAG+ G + + V+++
Sbjct: 302 NGDAKVLVATDVAGRGIHVDDISHVVNYTLPDQPDDYVHRIGRTGRAGQQGVSISFVSED 361

Query: 353 DIKHIDAIEKLIEKKV 368
           D  ++ AIE  ++ K+
Sbjct: 362 DAFNLPAIEAHLDTKL 377


>gi|120612881|ref|YP_972559.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120591345|gb|ABM34785.1| ATP-dependent RNA helicase DbpA [Acidovorax citrulli AAC00-1]
          Length = 477

 Score =  262 bits (670), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 151/392 (38%), Positives = 221/392 (56%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLSP+V+  +   GY + TPIQ  ++P  L   D+   A TG+GKTA+F L +L  
Sbjct: 19  FDALGLSPEVLANLRQLGYERMTPIQAASLPPALLGRDLIAQASTGSGKTAAFGLALLER 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L   R  V+    L+L PTRELA QVA    +  +   N+ V  L GG+P   Q   LE 
Sbjct: 79  LNPRRFAVQ---ALVLCPTRELADQVAAEIRRLARAQENIKVVTLCGGVPLRGQAASLEH 135

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  RG L +  +   V+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 136 GAHVVVGTPGRVMDHLERGTLDLGALATFVLDEADRMLDMGFSEDIAQVARRCPDTRQTL 195

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + +++++  F+++P+RI V    +  +  +  +     Q  ++   + QLL +
Sbjct: 196 LFSATYPEGIERIARQFMKDPQRIVVQAQHAEGKIGQRWY---EVQERERLHAVSQLL-N 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ I FCN K+   +L   L  QGFS  A+HG+++QR R ++L  F   +  ++VA
Sbjct: 252 HFRPESAIAFCNTKQQCRDLVEVLRAQGFSALALHGDLEQRDRDQVLVQFANRSCSVLVA 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI  +  V N DV    E +IHRIGRTGRA   G A +L +  ++  +  IE
Sbjct: 312 TDVAARGIDIAGLQAVINVDVAPDPEVHIHRIGRTGRADAEGLALSLASLPEMGQVGRIE 371

Query: 362 KLIEKKVDW--LNGDLSS----LNPPLEKIDI 387
            L  +  +W  L+G   +    L PP+  I I
Sbjct: 372 VLQGRPSEWHPLSGLTPAPGGPLQPPMATIQI 403


>gi|255034351|ref|YP_003084972.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254947107|gb|ACT91807.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 411

 Score =  262 bits (669), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 233/370 (62%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  ++ ++  ++  AG+ KPT IQ K IP V++  DV  IAQTGTGKTA+F +P++
Sbjct: 1   MKFDDYPIAAEIKRSLEAAGFKKPTDIQFKAIPAVMKGEDVLAIAQTGTGKTAAFAIPVI 60

Query: 61  TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L K ++  R    + +++ PTRELA Q+A+ F    +   +    + GG+    Q  K
Sbjct: 61  DKLHKQKSSSRSEGIKCVVMVPTRELAIQIAEVFSSISRYTKVKTFSVFGGVEQGPQIAK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE+G D+L+ TPGR+ D  ++G + ++ ++ L++DEAD MLD+GFI  IQ++   +P  R
Sbjct: 121 LEKGIDILVSTPGRMFDLVSQGHIRLDRVDTLILDEADHMLDLGFIKDIQDLIRHLPKRR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSAT+ ++++K++ + ++N  RI+++  +  A+ I+H  VA  A   K+  L + +
Sbjct: 181 QTLFFSATIDEKIKKLAYSLVRNAIRIQISPKNPVAKNIDHS-VAFVAMDDKRFFLERVI 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            Q+ D  K  ++F   K     + ++LE+       IHG+  Q  R+  ++ FK+G +++
Sbjct: 240 RQNAD--KKILVFVRTKVRAERVFNALERMEIKSLTIHGDKQQSDRLTAMNEFKKGNVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D++ARG+DIP+V +V N+D+P + E+Y+HR+GRTGR  + G A +  ++E+   +D
Sbjct: 298 LIATDVSARGIDIPNVDYVINYDLPEQPESYVHRVGRTGRGMQKGIAVSFCSEEEKPLLD 357

Query: 359 AIEKLIEKKV 368
            I++ ++K +
Sbjct: 358 EIQQYLDKPI 367


>gi|187922064|ref|YP_001893706.1| ATP-dependent RNA helicase DbpA [Burkholderia phytofirmans PsJN]
 gi|187713258|gb|ACD14482.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 467

 Score =  262 bits (669), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 147/392 (37%), Positives = 220/392 (56%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P  +  +   GYV+ TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 11  FSQLPLPPATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+   AR    + ++L PTRELA QV     +  +   N+ V  L GG P   Q   LE 
Sbjct: 71  LD---ARNFAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  RG L + ++  LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 128 GAHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVKQCPKERQTL 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K+S+ FL+NPK +++       +  +  +  T         LL    + 
Sbjct: 188 LFSATYPEGIVKLSQQFLRNPKEVKLAERHDNTKIRQRFYEVTEDGRLHAVGLLLNHYRP 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+     FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 248 VSTLA----FCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L +  ++  + ++E
Sbjct: 304 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGSLE 363

Query: 362 KLIEKKVDWLN-GDLSS-----LNPPLEKIDI 387
           +  +++V+W    +L++     L PP+E + I
Sbjct: 364 QAQKREVEWHKLSELTAASNERLLPPMETLQI 395


>gi|332520631|ref|ZP_08397093.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332043984|gb|EGI80179.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 451

 Score =  262 bits (669), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 145/370 (39%), Positives = 214/370 (57%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L+  +  A+ D GY  PTPIQ +   +V    D+ GIAQTGTGKT +++LP+L
Sbjct: 1   MTFRDLNLNTPLYNALDDLGYTTPTPIQAEAFNVVASGKDMVGIAQTGTGKTFAYMLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   +     PR L+L PTREL  QV +  EK  K  N  V  + GG     Q + + 
Sbjct: 61  RNLPFSKQE--NPRVLVLVPTRELVVQVVEEIEKLSKYINNRVLGVYGGTNINTQKQAIA 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+ D      L + +I+ L+IDE D MLD+GF   + NI  L+P  RQ 
Sbjct: 119 QGIDILVATPGRLYDLALSRVLQLKSIQKLIIDEVDVMLDLGFRHQLINIFDLLPTRRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSATMT ++  +  +F ++P+++ + T  +  E I+         Y+ K  LL+ LLQ
Sbjct: 179 IMFSATMTKDVDDLIVDFFKSPEKVSIATSGTPLENIKQTRYKAPNFYT-KLNLLKHLLQ 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++T    +IF   KK    L  +L E+    +C IH N  Q  R++ +  F+EG  +++
Sbjct: 238 DEETYNKVLIFVAYKKMADRLFEALDEEYNEELCVIHSNKTQNYRLRSIEQFREGINRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLDI +V HV NFD P   ENY+HRIGRTGRA R G A     +++ + I+ 
Sbjct: 298 VATDVMARGLDIDNVSHVINFDTPEYPENYMHRIGRTGRAEREGHALVFTTEKEQQAIED 357

Query: 360 IEKLIEKKVD 369
           IE L++  ++
Sbjct: 358 IEALMDMTIN 367


>gi|224536831|ref|ZP_03677370.1| hypothetical protein BACCELL_01707 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521553|gb|EEF90658.1| hypothetical protein BACCELL_01707 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 657

 Score =  262 bits (669), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 137/368 (37%), Positives = 226/368 (61%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
           +F +LGLSP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++
Sbjct: 3   NFEELGLSPEIRRAIEEMGYECPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
              +K   + R+P++LIL PTREL  Q+A +   Y K    L V  + GG   ++Q + L
Sbjct: 63  ---QKINVKNRIPQSLILCPTRELCLQIAGDLNDYSKYITGLRVLPVYGGSSIDSQIRAL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G  +++ TPGR+LD   R  + +  I+ +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KQGVHIIVATPGRLLDLMERKTVSLTTIQNVVMDEADEMLNMGFTDSINAILADVPQERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+ +L++ K I +   + +   ++H     +A+   K A L++++
Sbjct: 180 TLLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVVFTVHAK--DKYAALKRIV 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +  GIIFC  +K    +   L + G++  ++HG + Q  R  ++  F+   +Q++
Sbjct: 238 DYYPQI-YGIIFCRTRKETQEIADKLMQDGYNADSLHGELSQAQRDTVMQKFRIRNLQIL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRE 356

Query: 360 IEKLIEKK 367
           IE++I KK
Sbjct: 357 IERIISKK 364


>gi|46447193|ref|YP_008558.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400834|emb|CAF24283.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 515

 Score =  262 bits (669), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 142/363 (39%), Positives = 210/363 (57%), Gaps = 7/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F   GL   ++ A+ +AG+   +PIQ + IP+VL  HDV   A TGTGKTA+F LP L
Sbjct: 11  LAFEQFGLKAPILQALQEAGFKIASPIQKQAIPVVLAGHDVVAQAHTGTGKTAAFGLPAL 70

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ++          + L+L PTRELA+QV+D   + G++  +  A + GG  F  Q + L+
Sbjct: 71  HLIHDNPG----SQLLVLTPTRELASQVSDELFRLGRHLGIRTATICGGKSFRPQIEALQ 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR+ D      L      I+V+DEAD MLDMGF+  IQ I + +P  RQT
Sbjct: 127 RGVQVIVATPGRLQDLLESDSLPDFRPAIVVLDEADEMLDMGFLEAIQRIFTFLPAKRQT 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +QK++   L+ P  I V    +T + I+  +            L  +LL 
Sbjct: 187 LLFSATMPSAIQKLAHQILKKPIFISVTQKETTNKDIKQVYYVIREDERDDAIL--RLLD 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++  K+ IIFC  KK+V  L  +L   G+    +HG+++Q  R +++ +F+   I+++V
Sbjct: 245 SEEPAKS-IIFCRTKKDVDRLSTTLVANGYHARGLHGDMEQPQREEVIRHFRSEQIRVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL + DV HVFN+ +P    +Y+HRIGRTGRAG  G A T V   + +     
Sbjct: 304 ATDVAARGLSVSDVSHVFNYHLPFDPASYVHRIGRTGRAGNKGVASTFVTLREWREFQRY 363

Query: 361 EKL 363
           EK+
Sbjct: 364 EKV 366


>gi|307331747|ref|ZP_07610851.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306882613|gb|EFN13695.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 1097

 Score =  262 bits (669), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 151/418 (36%), Positives = 233/418 (55%), Gaps = 30/418 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F +LG+ P+   A+   G + P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L  
Sbjct: 38  FRELGILPETAEALEAVGIMSPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLER 97

Query: 61  ----TILEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                 +E GRA+       P+ L++ PTREL  QV ++    GK   + V  + GG  +
Sbjct: 98  VVVSADVEAGRAKPEQLTDAPQALVVVPTRELCQQVTNDLLTAGKVRAVRVLSIYGGRAY 157

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E Q + L++G DV++ TPGR+LD   + KL +++++ LV+DEAD MLD+GF+P ++ I  
Sbjct: 158 EPQVEALKKGVDVVVGTPGRLLDLAGQKKLRLSSVKSLVLDEADEMLDLGFLPDVEKIIQ 217

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI----EHCFVATYAQY 228
           L+P  RQT+LFSATM  ++  ++  ++  P  I    P     T+    +H F    A  
Sbjct: 218 LLPAKRQTMLFSATMPGQVISLARRYMSQPTHIRATAPDDEGATVANITQHVF---RAHS 274

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
             K  ++ ++LQ+ D     +IFC  K+   ++   L ++GF+  A+HG++ Q +R + L
Sbjct: 275 MDKPEVVARVLQA-DGRGLVMIFCRTKRTAADIADQLARRGFASGAVHGDLGQGAREQAL 333

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             F+ G + ++V +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAG  G A TL
Sbjct: 334 RAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGASGIAITL 393

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
           V  +DI       +LI K +D       + + P E    ++H     N  IP  +TG 
Sbjct: 394 VDWDDIPRW----QLINKALDL------AFHEPEETYSTSEHLFELLN--IPAGTTGV 439


>gi|163789144|ref|ZP_02183587.1| putative RNA helicase dead-box protein [Flavobacteriales bacterium
           ALC-1]
 gi|159875557|gb|EDP69618.1| putative RNA helicase dead-box protein [Flavobacteriales bacterium
           ALC-1]
          Length = 638

 Score =  262 bits (669), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 224/369 (60%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61
           F +LGL+  ++ A+ D G+ KP+ +Q K IPL+L+   D+  +AQTGTGKTA+F  PML 
Sbjct: 4   FQELGLNEDLLNAITDLGFEKPSEVQEKAIPLLLEEDKDLVALAQTGTGKTAAFGFPMLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            ++      R  + LIL PTREL  Q+ +  ++YGK    L V  + GG     Q + ++
Sbjct: 64  KID---IDSRTTQGLILSPTRELCLQITNELKQYGKYCKGLNVTAIYGGASITDQARSVK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +++ TPGR+ D  +R  + ++ I+  V+DEAD ML+MGF   I +I S  P  + T
Sbjct: 121 RGAQIIVATPGRMKDMISRKLVDISKIQYSVLDEADEMLNMGFYEDITDILSHTPDDKST 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  +++ F+ +P  I V   + +   + H +    A+   +   L++L  
Sbjct: 181 WLFSATMPKEVSTIAKKFMYDPTEITVGNRNESTNNVSHEYYLVNAR--DRYQALKRLSD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   + + +IFC  K++   +  +L + G+S  A+HG++ Q  R  ++ +F+   IQ++V
Sbjct: 239 ANPDIFS-VIFCRTKRDTQKVAENLIEDGYSAGALHGDLSQNQRDIVMKSFRNKQIQMLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV N+ +P+  E Y HR GRTGRAG+ G +  +V+K + + I +I
Sbjct: 298 ATDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIVSKSETRKIKSI 357

Query: 361 EKLIEKKVD 369
           E++I+K+ +
Sbjct: 358 ERIIKKQFE 366


>gi|331694934|ref|YP_004331173.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326949623|gb|AEA23320.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 621

 Score =  262 bits (669), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 150/419 (35%), Positives = 234/419 (55%), Gaps = 32/419 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA+LG+ P++V A+ + G  +   IQ  T+PL L   D+ G A+TGTGKT  F +P+L  
Sbjct: 99  FAELGVRPEIVSALAEVGIERTFAIQELTLPLALAGEDLIGQARTGTGKTLGFGVPLLQR 158

Query: 61  --------TILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                       +G A  R   +P+ L++ PTREL  QVA +    G++  + V  + GG
Sbjct: 159 IVPPAERPAATAEGEAADRTKDVPQALVVVPTRELCVQVAQDLTDAGRDLGIRVTAIYGG 218

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
             +E Q   L +G DV++ TPGR+LD   +  L +  + +LV+DEAD MLD+GF+P ++ 
Sbjct: 219 RAYEPQLNALRKGVDVVVGTPGRLLDLAEQRHLALGRVGVLVLDEADEMLDLGFLPDVER 278

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTAETIEHCFVATYA 226
           I  ++P  RQT+LFSATM   +  +S  FL  P  I   E +  S    T +H +    A
Sbjct: 279 ILRMLPEERQTMLFSATMPGPIIALSRAFLNRPTHIRAEESDQGSIHERTKQHVY---RA 335

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
               K  LL ++LQ++D     +IF   K+ V  +   L ++GF+  A+HG++ Q +R +
Sbjct: 336 HAMDKVELLTRVLQAKDRGLT-MIFARTKRTVQRVADDLAERGFAAAAVHGDLGQGAREQ 394

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G + ++VA+D+AARG+D+ DV HV N+  P  A+ Y+HRIGRTGRAG+ G A 
Sbjct: 395 ALRAFRSGKVDVLVATDVAARGIDVTDVTHVINYQCPEDAKTYVHRIGRTGRAGKEGVAV 454

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           TLV  +++       KL+  ++         ++ P+E    + H +   +  IP  +TG
Sbjct: 455 TLVDWDEMPRW----KLVSDELGL------GIDEPVETYSTSDHLYTDLD--IPTDATG 501


>gi|225443496|ref|XP_002270644.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 709

 Score =  262 bits (669), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 140/373 (37%), Positives = 206/373 (55%), Gaps = 25/373 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  LSP+++ AV  AGY  P+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPMLT 
Sbjct: 291 WVESKLSPELLKAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTY 350

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + +            P  +++ PTRELA Q+ D   K+     + V  ++GG   E Q  
Sbjct: 351 ISRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGF 410

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           ++ +G +V+I TPGR++D   R   ++N    +V+DEADRM+DMGF P +  +   +P +
Sbjct: 411 RIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 470

Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
                            R T +FSATM   +++++  +L+NP  + + T     + I   
Sbjct: 471 NLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQH 530

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
            +      S+K   LQ+LL      K  I+F N KK+   L   L+K G+ V  +HG   
Sbjct: 531 VIMVKG--SEKMPKLQKLLDELGD-KTAIVFINTKKSTDTLAKGLDKAGYRVTTLHGGKS 587

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q  R   L  F+     ++VA+D+A RG+DIPDV HV N+D+P   E Y HRIGRTGRAG
Sbjct: 588 QEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAG 647

Query: 341 RHGKAFTLVAKED 353
           + G A T +   D
Sbjct: 648 KTGVATTFLTLHD 660


>gi|188527054|ref|YP_001909741.1| ATP-dependent RNA helicase [Helicobacter pylori Shi470]
 gi|188143294|gb|ACD47711.1| ATP-dependent RNA helicase [Helicobacter pylori Shi470]
 gi|308063109|gb|ADO04996.1| ATP-dependent RNA helicase [Helicobacter pylori Sat464]
          Length = 492

 Score =  262 bits (669), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 82  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +   + T   I   F        ++   + +LL +Q
Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374

Query: 363 LIEKKVDWL 371
            I+ K++  
Sbjct: 375 EIDSKIELF 383


>gi|327405768|ref|YP_004346606.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327321276|gb|AEA45768.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 685

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 137/366 (37%), Positives = 218/366 (59%), Gaps = 8/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59
           M F +LGL  +V+ ++   G+ +PTPIQ   IP +LQ   D  G+AQTGTGKTA+F LP+
Sbjct: 1   MTFKELGLRVEVLQSIEALGFAEPTPIQQSAIPHLLQLESDFVGLAQTGTGKTAAFGLPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKK 118
           +    K   R    + L++ PTREL  Q++ + E + K +  + V  + GG     Q   
Sbjct: 61  I---HKVTDRPTETQGLVIAPTRELCLQISKDLEAFAKFDQQIKVVAVYGGTDIRKQITD 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++RGA V++ TPGR++D  NR  + +  +E +V+DEAD ML+MGF   I  I S  P T+
Sbjct: 118 IKRGATVVVATPGRLVDLINRKAINLKTVETVVLDEADEMLNMGFKEDIDAILSATPDTK 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
              LFSATM  E+  +++N++ +P  + +   + + E IEH +  T  +  +  AL + +
Sbjct: 178 SVWLFSATMPKEVAAIAKNYMTDPLEVAMGHKNQSNENIEHIYY-TVKERDRYDALKRLI 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S D    G++FC  +     +   L K+G+S   +HG++ Q  R +++  F+E +IQL
Sbjct: 237 DASPDIF--GLVFCRTRNETATVAEKLAKEGYSAEPLHGDLSQAMRDRVMDRFRERSIQL 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ ++ HV N+++P+  ENY HR GRT RAG+ GK+  L+   +   I 
Sbjct: 295 LVATDVAARGIDVDNITHVINYNLPDDIENYTHRSGRTARAGKQGKSLVLINTRENFKIK 354

Query: 359 AIEKLI 364
           AIE+ I
Sbjct: 355 AIERQI 360


>gi|260770944|ref|ZP_05879873.1| ATP-dependent RNA helicase DbpA [Vibrio furnissii CIP 102972]
 gi|260614181|gb|EEX39371.1| ATP-dependent RNA helicase DbpA [Vibrio furnissii CIP 102972]
          Length = 460

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 142/364 (39%), Positives = 224/364 (61%), Gaps = 7/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P+++  +   G+   TPIQ +++P +L   DV G  +TG+GKTA+F L +L  
Sbjct: 6   FAALNLKPELLSNLDTMGFTHMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLQN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA +    G+  +N+ V  L GG+P   Q   LE 
Sbjct: 66  LHVKRFRVQ---SLVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH ++G++ ++ +  LV+DEADRML+MGF   +  I +  P  RQTL
Sbjct: 123 GAHILVGTPGRILDHLSKGRIDLSELNTLVLDEADRMLEMGFQEALDAIIAEAPKQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + +Q+++++  ++   I+V +   T+ +I   F       ++  AL   LL  
Sbjct: 183 LFSATYPEAIQEIAQSVTRDALMIKVASTHETS-SIRQQFYKVEGTEARDEALATLLLNH 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ ++FCN K+ V ++   L  +GFSV  +HG+++QR R + L  F   +I ++VA
Sbjct: 242 QP--ESAVVFCNTKREVQSVADELHHKGFSVIELHGDMEQRERDQALVQFANKSISVLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G A +  + +++  I  IE
Sbjct: 300 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSQGLAISFFSDKEMYRIAQIE 359

Query: 362 KLIE 365
           + ++
Sbjct: 360 EYMD 363


>gi|210614158|ref|ZP_03290078.1| hypothetical protein CLONEX_02291 [Clostridium nexile DSM 1787]
 gi|210150802|gb|EEA81810.1| hypothetical protein CLONEX_02291 [Clostridium nexile DSM 1787]
          Length = 530

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 142/371 (38%), Positives = 226/371 (60%), Gaps = 11/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +LGL  ++  AV   G+ + +PIQ K IP++L+  D+ G AQTGTGKTA+F +P+L
Sbjct: 4   MNFENLGLCSEIQKAVKYMGFEEASPIQAKAIPVILEGKDIIGQAQTGTGKTAAFGIPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117
             ++    +++    ++L PTRELA QVAD   N  KY   + + V  + GG     Q +
Sbjct: 64  QKVDPKNKKLQ---GIVLCPTRELAIQVADEIRNLAKY--MHGIKVLPIYGGQEIVKQIR 118

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G  ++I TPGR++DH  R  + M+ +  +V+DEAD ML+MGF   I+ I S VP  
Sbjct: 119 SLKSGTQIIIGTPGRVMDHMRRKTIKMDQVHTVVLDEADEMLNMGFREDIETILSGVPEE 178

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSATM   + ++++ F +N + ++V     T   IE  +     +   K  +L +
Sbjct: 179 RQTVLFSATMPKAIMEITKKFQKNAQMVKVTKKELTVPNIEQFYYEVRPK--NKEEVLTR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL    T K  +IFCN KK V  L  +L  +G+    +HG++ Q  R +++  F+ G   
Sbjct: 237 LLDIY-TPKLSVIFCNTKKQVDLLVTALLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTD 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ +V  VFN+D+P   E Y+HRIGRTGRAGR G++F+ V+ +++  +
Sbjct: 296 ILVATDVAARGIDVDEVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKL 355

Query: 358 DAIEKLIEKKV 368
             I++  + K+
Sbjct: 356 KEIQRYCKTKI 366


>gi|212275354|ref|NP_001130628.1| hypothetical protein LOC100191727 [Zea mays]
 gi|194689682|gb|ACF78925.1| unknown [Zea mays]
          Length = 614

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 154/405 (38%), Positives = 233/405 (57%), Gaps = 34/405 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+  V+  V   GY  PTP+Q   +P+V+   D+   AQTG+GKTA+F LP+++ 
Sbjct: 82  FEAAGLAEAVLRNVARCGYESPTPVQRYAMPIVMAGRDLMACAQTGSGKTAAFCLPVVSG 141

Query: 63  L-------------EKGR-ARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
           L             ++G   RV   PR L+L PTRELAAQ+ +  +K+     L V +  
Sbjct: 142 LVAPAGGGNGHGPRDRGSFDRVAAKPRALVLAPTRELAAQINEEAKKFSFQTGLRVVVAY 201

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG P  +Q + LE+G D+L+ TPGR++D   R ++ +  I+ LV+DEADRML+MGF P I
Sbjct: 202 GGTPMFSQLRDLEKGVDLLVATPGRLVDLVERSRISLEAIKYLVMDEADRMLNMGFEPQI 261

Query: 168 QNITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I  ++       RQT+LFSAT   E+Q+++ +FL N   + V    S+ + I+     
Sbjct: 262 RKIVDMMNMPKKSVRQTMLFSATFPPEIQRLATDFLHNYIFVTVGRVGSSTDLIDQKI-- 319

Query: 224 TYAQYSKKCALLQQLLQSQDT--MKN----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
            +    +K   L  +LQ Q     KN     ++F   K+   +L + L+  GFS  +IHG
Sbjct: 320 EFVNGGEKRGFLLDILQKQSVGLSKNKQPLTLVFVETKREADSLQYCLQSNGFSATSIHG 379

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           +  Q+ R + L +FK G   ++VA+D+A+RGLD+P+V HV N+D+P   ++Y+HRIGRTG
Sbjct: 380 DRTQQERERALKSFKSGATPILVATDVASRGLDVPNVAHVINYDLPKSIDDYVHRIGRTG 439

Query: 338 RAGRHGKAFTLVAKEDIKHI--DAIEKLIEKKVD---WLNGDLSS 377
           RAG+ GKA  L  + +  H+  D +E +   K D   WL GD +S
Sbjct: 440 RAGKAGKATALFTESN-HHLAKDLLELMTGAKQDVPEWL-GDYAS 482


>gi|262383201|ref|ZP_06076338.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B]
 gi|298373901|ref|ZP_06983859.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_19]
 gi|262296079|gb|EEY84010.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B]
 gi|298268269|gb|EFI09924.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_19]
          Length = 609

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 220/369 (59%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG++  ++ A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA++ LP   
Sbjct: 4   FEELGVAAPILKAIQEMGYESPMPVQEEVIPFLLGEDNDVIALAQTGTGKTAAYGLP--- 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           IL+K       P+ LIL PTREL  Q+AD+   Y K   NL V  + GG   E+Q K L+
Sbjct: 61  ILQKINVSQYQPQALILCPTRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIESQIKTLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++D  NR  + ++N++ +++DEAD ML+MGF   I  I + +P  R  
Sbjct: 121 RGVHVVVATPGRLIDLMNRKTVDLSNVKNVILDEADEMLNMGFTDSINEILAAIPENRNM 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+  +++ ++++PK I +   +   + I   +    AQ   K   L++L  
Sbjct: 181 LLFSATMPKEIASITKKYMKDPKEIVIGRKNEGNKNIRDIYYMVRAQ--DKYLALKRLAD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L + G++  ++HG + Q  R  ++  F+   IQL+V
Sbjct: 239 YYPNIY-GIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRIKNIQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G A ++    +   I  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGIAISICHVREKGKIREI 357

Query: 361 EKLIEKKVD 369
           E++I KK D
Sbjct: 358 ERIINKKFD 366


>gi|39644716|gb|AAH09379.2| DDX47 protein [Homo sapiens]
          Length = 450

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 222/368 (60%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 21  FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 79

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 80  ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 136

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 137 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++  ++   +++  K   L  +L 
Sbjct: 197 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDTYLVYIL- 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 254 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 314 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 373

Query: 361 EKLIEKKV 368
           E LI KK+
Sbjct: 374 EHLIGKKL 381


>gi|332856302|ref|ZP_08436187.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013150]
 gi|332727108|gb|EGJ58577.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013150]
          Length = 475

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 143/378 (37%), Positives = 227/378 (60%), Gaps = 15/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP L  
Sbjct: 5   FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 64

Query: 63  L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111
           L          E+ +A V  P  L+L PTRELA QV+ +   + ++   + +A ++GG+P
Sbjct: 65  LAGQDTFVPFKERMKA-VTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           F  Q ++L +GA V++ TPGR+LD  NR +L ++ ++ L++DEADRMLD+GF   ++ I+
Sbjct: 124 FGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 182

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            L     QTL+FSAT  D + +++E  +  P+RI + T  ST   I      T     KK
Sbjct: 183 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 242

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L   L  + +T+   ++F + +++   L   L + G SV A+HG + Q  R + L + 
Sbjct: 243 KLLTHWL--ADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 300

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL   
Sbjct: 301 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATY 360

Query: 352 EDIKHIDAIEKLIEKKVD 369
            +   I A+E  +E +++
Sbjct: 361 RERGKIRALEDYLEARLN 378


>gi|149180848|ref|ZP_01859350.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. SG-1]
 gi|148851367|gb|EDL65515.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. SG-1]
          Length = 496

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 218/364 (59%), Gaps = 11/364 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LG+S  V+  +       PTPIQ K IP V++  DV   AQTGTGKT +F+LP++ 
Sbjct: 3   NFKSLGISEAVIERLQKENVTTPTPIQEKAIPAVIKGKDVIAQAQTGTGKTLAFILPIIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
             +  +  ++    LI+ PTRELA Q+ +   K  ++   ++V  + GG   E Q  KL 
Sbjct: 63  NFDFNQQSIQ---ALIVTPTRELALQITEEVRKLIRHIEGISVLPVYGGQDVEKQLNKLR 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRILDH  RG + ++ +  LV+DEAD+ML +GF+  ++ I    P TRQT
Sbjct: 120 KNVGIVVGTPGRILDHIGRGTIDLSELNSLVLDEADQMLHIGFLKEVEMIIRETPKTRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQL 238
           LLFSAT+ DE++ +++  +++P+ I V      A+++E    FV   A   K+  L++ +
Sbjct: 180 LLFSATIPDEIKTLAKKHMKSPEYISVERKQGPAKSVEQKAVFVNDRA---KQATLIEMI 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            + +  +   +IFC  K+ V  L  +L  +GF    +HG++ Q  R K++  F++   QL
Sbjct: 237 KEYRPYL--AVIFCRTKRRVTKLYEALASEGFMCDELHGDLSQAKREKVMKRFRDAEFQL 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLD+  + HVFN+D+P  A++Y+HRIGRTGRAG  G A T  + +    + 
Sbjct: 295 LIATDVAARGLDVEGITHVFNYDIPEDADSYVHRIGRTGRAGEKGLAVTFYSPQQKDQLA 354

Query: 359 AIEK 362
            IEK
Sbjct: 355 EIEK 358


>gi|108763762|ref|YP_633382.1| ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK 1622]
 gi|108467642|gb|ABF92827.1| ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK 1622]
          Length = 423

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 146/371 (39%), Positives = 216/371 (58%), Gaps = 17/371 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +  AV   GY +PTP+Q  TIP+VL+  DV   A+TG+GKTA+F+LP  
Sbjct: 1   MTFASLGLSDALTRAVAGLGYDEPTPVQRATIPVVLRGGDVWASAKTGSGKTAAFLLP-- 58

Query: 61  TILEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEA 114
            ILE  RAR    VR  R  IL PTRELAAQ+ D+ ++YG++    L   L +GG+    
Sbjct: 59  -ILEALRARPGGSVRPVRAFILVPTRELAAQIVDSIQRYGQHLKKPLKTCLAVGGVSANP 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GAD+++ TPGR LD  ++  L ++ +E LV+DEADR+  +GF   + ++ +L+
Sbjct: 118 QMLALRGGADIVVATPGRALDLVHQNALRLDQVETLVLDEADRLFSLGFADELNSLLALL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV---ATYAQYSKK 231
           P  RQ LLFSAT    ++K +E  L  P RI+V+      E     F+   A      ++
Sbjct: 178 PTRRQNLLFSATFPPAVRKFAEQLLHEPTRIDVD----DGELPSTEFILQRALQVDVPRR 233

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL+ LL++     + + F   +    ++   L + G    ++HG + Q +R + L++F
Sbjct: 234 TMLLRHLLETH-AWSHVLTFVASRYTADHVALKLNRAGIVATSLHGELSQGARTRALADF 292

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K   ++++VA+D+AARGLDI  +  V N+D+P    +Y+HRIGRTGRAG  G A + V+ 
Sbjct: 293 KAKRVRVLVATDVAARGLDIAQLPAVVNYDLPRSTADYVHRIGRTGRAGDKGVAISFVSA 352

Query: 352 EDIKHIDAIEK 362
               H   IEK
Sbjct: 353 GTEAHFRLIEK 363


>gi|20149629|ref|NP_057439.2| probable ATP-dependent RNA helicase DDX47 isoform 1 [Homo sapiens]
 gi|52782792|sp|Q9H0S4|DDX47_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
           Full=DEAD box protein 47
 gi|12052856|emb|CAB66601.1| hypothetical protein [Homo sapiens]
 gi|45786091|gb|AAH68009.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Homo sapiens]
 gi|117645464|emb|CAL38198.1| hypothetical protein [synthetic construct]
 gi|119616683|gb|EAW96277.1| hCG2044052 [Homo sapiens]
 gi|119616687|gb|EAW96281.1| hCG27698, isoform CRA_a [Homo sapiens]
 gi|193785403|dbj|BAG54556.1| unnamed protein product [Homo sapiens]
          Length = 455

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 222/368 (60%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 26  FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++  ++   +++  K   L  +L 
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDTYLVYIL- 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378

Query: 361 EKLIEKKV 368
           E LI KK+
Sbjct: 379 EHLIGKKL 386


>gi|308182422|ref|YP_003926549.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan4]
 gi|308064607|gb|ADO06499.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan4]
          Length = 492

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 82  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +   ++T   I   F        ++   +  LL +Q
Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNTTNTDITQRFYVINEH--ERAEAIMHLLDTQ 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374

Query: 363 LIEKKVDWL 371
            I+ +++  
Sbjct: 375 EIDSEIELF 383


>gi|315178988|gb|ADT85902.1| ATP-dependent RNA helicase DbpA [Vibrio furnissii NCTC 11218]
          Length = 460

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 142/364 (39%), Positives = 224/364 (61%), Gaps = 7/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P+++  +   G+   TPIQ +++P +L   DV G  +TG+GKTA+F L +L  
Sbjct: 6   FAALNLKPELLSNLDTMGFTHMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLQN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA +    G+  +N+ V  L GG+P   Q   LE 
Sbjct: 66  LHVKRFRVQ---SLVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH ++G++ ++ +  LV+DEADRML+MGF   +  I +  P  RQTL
Sbjct: 123 GAHILVGTPGRILDHLSKGRIDLSELNTLVLDEADRMLEMGFQEALDAIIAEAPKQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + +Q+++++  ++   I+V +   T+ +I   F       ++  AL   LL  
Sbjct: 183 LFSATYPEAIQEIAQSVTRDALMIKVASTHETS-SIRQQFYKVEGTEARDEALATLLLNH 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ ++FCN K+ V ++   L  +GFSV  +HG+++QR R + L  F   +I ++VA
Sbjct: 242 QP--ESAVVFCNTKREVQSVADELHHKGFSVIELHGDMEQRERDQALVQFANKSISVLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G A +  + +++  I  IE
Sbjct: 300 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSQGLAISFFSDKEMYRIAQIE 359

Query: 362 KLIE 365
           + ++
Sbjct: 360 EYMD 363


>gi|114643639|ref|XP_001154067.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 3 [Pan
           troglodytes]
          Length = 455

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 222/368 (60%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 26  FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++  ++   +++  K   L  +L 
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDTYLVYIL- 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378

Query: 361 EKLIEKKV 368
           E LI KK+
Sbjct: 379 EHLIGKKL 386


>gi|297691246|ref|XP_002823001.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Pongo
           abelii]
          Length = 455

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 222/368 (60%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 26  FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++  ++   +++  K   L  +L 
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDTYLVYIL- 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378

Query: 361 EKLIEKKV 368
           E LI KK+
Sbjct: 379 EHLIGKKL 386


>gi|331269837|ref|YP_004396329.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           botulinum BKT015925]
 gi|329126387|gb|AEB76332.1| DEAD/DEAH box helicase domain protein [Clostridium botulinum
           BKT015925]
          Length = 370

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 141/365 (38%), Positives = 218/365 (59%), Gaps = 6/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +LG+S  ++  +   G   PTPIQ K+I LV + +DV   AQTGTGKT +F+LPM 
Sbjct: 1   MNFKELGISEDIIKVLKSQGVTTPTPIQEKSIKLVKEENDVIAEAQTGTGKTFAFLLPMF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E     +   + LI+ PTRELA Q+ +   K  K  +L +    GG    +Q KKL+
Sbjct: 61  ---ENMSPNINTVQGLIVTPTRELAIQITEEANKLKKAKDLNILAAYGGKDISSQLKKLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH  R  + +  ++ +V+DEAD+ML MGF   ++ I       +Q 
Sbjct: 118 GNIHLVIATPGRLLDHIKRNTINLQKLKTIVLDEADQMLYMGFKNEVEEIMKHTSKKKQI 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  +++K++  +++ PK + + +   T + I+   V T     K+ AL + L +
Sbjct: 178 LCFSATMNSQVKKLAYRYMKEPKIVSIQSEEVTLKNIKQAVVET-TDRRKQDALCKVLDE 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               M   IIFC  K+ V NL  +L ++G++   IHG+++Q  R +++  FK+  IQ ++
Sbjct: 237 DNPFM--AIIFCRTKRRVDNLEDALHERGYNCKKIHGDLNQAKRERVMKEFKKMDIQYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+++D+P  AE+YIHRIGRTGRAG  G+    +  +D + +D I
Sbjct: 295 ATDVAARGLDISGVTHVYSYDIPENAESYIHRIGRTGRAGEEGETCLFIDPKDKRTLDII 354

Query: 361 EKLIE 365
           EK I+
Sbjct: 355 EKEIK 359


>gi|90408914|ref|ZP_01217050.1| putative ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
 gi|90309973|gb|EAS38122.1| putative ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
          Length = 431

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 143/374 (38%), Positives = 220/374 (58%), Gaps = 19/374 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGL   ++  + +  Y +PTPIQ + IP +L+ HD+   A TG+GKTA+F LP+L 
Sbjct: 9   NFTELGLIQPLLARLTELEYQQPTPIQAQAIPSILRGHDLIAGANTGSGKTATFALPLLQ 68

Query: 62  -ILEKGRARVRMPRT---------LILEPTRELAAQVADNFEKYGKNYN--LTVALLIGG 109
            I E+ +A+  +  +         LIL PTRELA QVAD+ + Y  ++N  +    + GG
Sbjct: 69  HIFEQQQAQKNVSNSREKGNYVTSLILVPTRELAKQVADSIKSYAVHFNGAIKTVAVFGG 128

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +    Q   L  G D+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  
Sbjct: 129 VSANTQMLALRGGTDILVATPGRLLDLISSNAIKLDRVQCLVLDEADRMLSLGFTDELSA 188

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQY 228
           + +L+P  +QTLLFSAT  +++Q +++  L  P  +E+   S+ A T ++  F     Q 
Sbjct: 189 LLALLPKKKQTLLFSATFPEQVQALTQELLNEP--VEIQLQSADASTLVQRVFTVNKGQ- 245

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
             K ALL  L++     +  +IF N K+N  +L   L K+G +    HG   Q +R ++L
Sbjct: 246 --KTALLAHLIKHHQ-WRQALIFVNAKRNCDHLAEKLSKRGITAEVFHGAKGQGARDRVL 302

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +FK G I +++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G A +L
Sbjct: 303 ESFKAGEINVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSL 362

Query: 349 VAKEDIKHIDAIEK 362
           +  ED  H   IEK
Sbjct: 363 IDHEDYHHFKIIEK 376


>gi|84392274|ref|ZP_00991701.1| putative ATP-dependent RNA helicase [Vibrio splendidus 12B01]
 gi|84376394|gb|EAP93274.1| putative ATP-dependent RNA helicase [Vibrio splendidus 12B01]
          Length = 428

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 216/370 (58%), Gaps = 15/370 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
           +F+DLGL   ++  + +  Y +PTPIQ + IP VL   D+   A TG+GKTA+F LP+L 
Sbjct: 9   NFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQ 68

Query: 61  -----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113
                  L++   +      LIL PTRELA QVAD+ + Y  ++N  +    + GG+   
Sbjct: 69  QIHEDAPLDRRAGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVN 128

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L  G D+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  I  L
Sbjct: 129 TQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKL 188

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKC 232
           +P  +QTLLFSAT  ++++ ++   L +P  IEV   S+ A T ++  F     +  +K 
Sbjct: 189 LPSKKQTLLFSATFPEQVKTLTHELLNDP--IEVQLQSANASTLVQRVF---EVEKGRKT 243

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           ALL  L+Q Q   +  +IF N K +  +L   L K+G      HG+  Q SR +IL +FK
Sbjct: 244 ALLAHLIQ-QHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFK 302

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G I +++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G A +L+  E
Sbjct: 303 SGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHE 362

Query: 353 DIKHIDAIEK 362
           D  H   IEK
Sbjct: 363 DYHHFTIIEK 372


>gi|84385240|ref|ZP_00988272.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus 12B01]
 gi|84379837|gb|EAP96688.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus 12B01]
          Length = 459

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 140/368 (38%), Positives = 222/368 (60%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ + L P+++  +   GY + TPIQ  ++P +L   DV G  +TG+GKTA+F L +L  
Sbjct: 6   FSSIALKPELLNTLDSLGYTEMTPIQALSLPTILDGKDVIGQGKTGSGKTAAFGLGVLQN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA       +  +N+ V  L GG+P   Q   LE 
Sbjct: 66  LRVKRFRVQ---SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH  R ++ ++ +  LV+DEADRML+MGF   +  +    P  RQTL
Sbjct: 123 GAHILVGTPGRILDHLERERIDLSELNTLVLDEADRMLEMGFQDALDAVIEAAPKDRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   +++ V++  + NP+ ++V + +    +I+  F       ++  AL   LL  
Sbjct: 183 LFSATFPKQIKSVADRIMNNPEMVKVES-THDHSSIQQHFYKVEGTEARDDALELMLLHH 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ ++FCN KK V N+   L  +GFSV  +HG+++QR R + L  F   TI ++VA
Sbjct: 242 QP--ESAVVFCNTKKEVQNVNDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G A +  +++++  +  I+
Sbjct: 300 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAISFFSEKEMHRVAQID 359

Query: 362 KLIEKKVD 369
           + ++  ++
Sbjct: 360 EYMDMPIE 367


>gi|57640241|ref|YP_182719.1| DEAD/DEAH box RNA helicase [Thermococcus kodakarensis KOD1]
 gi|57158565|dbj|BAD84495.1| DEAD/DEAH box RNA helicase [Thermococcus kodakarensis KOD1]
          Length = 406

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 139/363 (38%), Positives = 210/363 (57%), Gaps = 6/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59
           M F +LGLS   V AV   G+  PT IQ + IPL+L    D+ G ++TG+GKTA+F LP+
Sbjct: 1   MSFRELGLSSASVEAVERKGFSIPTDIQREVIPLLLSAESDIVGQSKTGSGKTAAFGLPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  +++    +R  + LIL PTRELA QV D          + V  + GG P   Q + L
Sbjct: 61  LDSIDES---IREVQALILTPTRELAIQVTDELRSLRGKRRIYVYSVYGGQPIGPQIRAL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G  +++ TPGR+LDH NRG L ++ +   V+DEADRMLDMGF   I+ I    P  ++
Sbjct: 118 EGGVHIVVGTPGRVLDHINRGTLNLDGVRFFVLDEADRMLDMGFQEDIEAIFRATPKEKR 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  ++  +++ +++NP+ + V+        +E  ++       ++  LL ++L
Sbjct: 178 VLMFSATMPMDVLLLAKKYMRNPEVVIVSRDELVPGEVEQEYIEAVPH--RRFDLLTKIL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +     GI+FC  K     L   L   GF   A++G++ Q +R K  + FK    +++
Sbjct: 236 SDESNEFYGIVFCQTKAETRELSMRLRAAGFRAEALNGDMSQPAREKTFNRFKARKTKIL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+P++ HV N+ +P   E YIHRIGRTGR G+ GKA T +A  +++    
Sbjct: 296 VATDVAARGLDVPEITHVINYSIPMNPEQYIHRIGRTGRMGKKGKAITFIAPGELRRFRY 355

Query: 360 IEK 362
           I K
Sbjct: 356 ITK 358


>gi|208434194|ref|YP_002265860.1| ATP-dependent RNA helicase [Helicobacter pylori G27]
 gi|208432123|gb|ACI26994.1| ATP-dependent RNA helicase [Helicobacter pylori G27]
          Length = 492

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 215/369 (58%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 82  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +   + T   I   F        ++   + +LL +Q
Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374

Query: 363 LIEKKVDWL 371
            I+ +++ L
Sbjct: 375 EIDSEIELL 383


>gi|88799091|ref|ZP_01114671.1| DEAD/DEAH box helicase-like protein [Reinekea sp. MED297]
 gi|88778074|gb|EAR09269.1| DEAD/DEAH box helicase-like protein [Reinekea sp. MED297]
          Length = 579

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 142/363 (39%), Positives = 218/363 (60%), Gaps = 7/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL+P ++  +   GY  PTPIQ + I  +L  +DV G+AQTGTGKTA+F LP+L
Sbjct: 5   LTFADLGLAPVLLKTLDSLGYETPTPIQSQAIVQLLDGNDVLGLAQTGTGKTAAFSLPLL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           + ++  + +   P+ L+L PTRELA QVA+ F+ Y +   N  V  + GG     Q + L
Sbjct: 65  SRIDTTKNK---PQALVLCPTRELAIQVAEAFQTYARGVDNFHVLPIYGGADMRNQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   V++ TPGR++DH  RG L +++++ LV+DEAD ML MGFI  I  I    P  +Q
Sbjct: 122 KQNPQVIVGTPGRVMDHLRRGTLDLSDLKHLVLDEADEMLRMGFIEDIDWILEHTPKDKQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM  +++++++ + ++P +IE+    S  + IE   +   A+   K   L ++L
Sbjct: 182 TALFSATMPHQIKRITDQYQKDPVKIEIKASHSELQQIEQ--LVWRARGLDKLDGLTRIL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +D     IIF   +     L   L  +G++  A+ G + Q+ R  ILS  K+G + ++
Sbjct: 240 EIED-WNAIIIFVRTRVECQFLSEKLAARGYAATALSGEVAQKQREDILSAMKKGKLDII 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI  + HV N+D+P     Y HRIGRTGRAGR GKA       + + I  
Sbjct: 299 IATDVAARGIDIERITHVINWDIPGDVSTYTHRIGRTGRAGRSGKAILFCKPREQRIIRD 358

Query: 360 IEK 362
           IE+
Sbjct: 359 IER 361


>gi|322509533|gb|ADX04987.1| Putative ATP-dependent RNA helicase [Acinetobacter baumannii
           1656-2]
          Length = 561

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 143/378 (37%), Positives = 227/378 (60%), Gaps = 15/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP L  
Sbjct: 9   FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 68

Query: 63  L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111
           L          E+ +A V  P  L+L PTRELA QV+ +   + ++   + +A ++GG+P
Sbjct: 69  LAGQDTFVPFKERMKA-VTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 127

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           F  Q ++L +GA V++ TPGR+LD  NR +L ++ ++ L++DEADRMLD+GF   ++ I+
Sbjct: 128 FGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 186

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            L     QTL+FSAT  D + +++E  +  P+RI + T  ST   I      T     KK
Sbjct: 187 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 246

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L   L  + +T+   ++F + +++   L   L + G SV A+HG + Q  R + L + 
Sbjct: 247 KLLTHWL--ADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 304

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL   
Sbjct: 305 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATY 364

Query: 352 EDIKHIDAIEKLIEKKVD 369
            +   I A+E  +E +++
Sbjct: 365 RERGKIRALEDYLEARLN 382


>gi|296392647|ref|YP_003657531.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus
           rotundus DSM 44985]
 gi|296179794|gb|ADG96700.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM
           44985]
          Length = 495

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 150/412 (36%), Positives = 232/412 (56%), Gaps = 26/412 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+ P++V ++  AG      IQ + +PL L  HD+ G A+TG GKT +F +P+L  
Sbjct: 10  FAELGVHPEIVASLAAAGKHNAFAIQEQALPLALGGHDLIGQARTGMGKTLAFGIPLLQR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT------VALLIGGIPFEAQN 116
           + +  A   +PR L++ PTREL  QV ++     K   L+      +  L GG P+E Q 
Sbjct: 70  VAEAAAE-DIPRALVVVPTRELCLQVTNDLVDACKQLKLSDGRPTRIVSLYGGRPYEGQI 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             LE+G DV++ TPGR+LD + RG L +N I +LV+DEAD MLD+GF+P ++ I + +P 
Sbjct: 129 ATLEKGVDVVVGTPGRLLDLWGRGNLKLNAIRMLVLDEADEMLDLGFLPDVEKIMAKLPT 188

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA---ETIEHCFVATYAQYSKKCA 233
            +QT+LFSAT+   +  ++  F+  P  I   +  + A    T +H +    A    K  
Sbjct: 189 GKQTMLFSATIPGPVLTLARTFMTQPTHIRAESHDTAAVHERTTQHVY---RAHALNKDE 245

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L+ + LQ++      +IF   K++   L   L ++GFS  ++HG++ Q +R + LS F++
Sbjct: 246 LVSRFLQAEGRGTT-MIFTRTKRSAGKLADELVERGFSAGSLHGDMSQGAREEALSGFRK 304

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I+++V +D+AARG+DI  + HV N+  P   + Y+HRIGRTGRAGR G A TLV  ED
Sbjct: 305 GKIEILVCTDVAARGIDIDGITHVINYTCPEDEKVYVHRIGRTGRAGRTGIAITLVDWED 364

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           +   + I   +          L+   PP      +   H   +  IP+ STG
Sbjct: 365 LPRWEHINTAL---------GLNHAEPPET---YSNSPHIYTDLGIPEGSTG 404


>gi|160937140|ref|ZP_02084503.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440041|gb|EDP17789.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
           BAA-613]
          Length = 569

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 225/367 (61%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L  +++ A+ + G+ + +PIQ + IP+ ++  D+ G AQTGTGKTA+F LP+L  
Sbjct: 6   FDELQLDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGLPLL-- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
            +K   +V+  + ++L PTRELA QVA+   ++ K  + + V  + GG     Q + L+ 
Sbjct: 64  -QKVDPKVKKLQAIVLLPTRELAIQVAEEMRRFAKFMHGVKVLPIYGGQDIVKQIRSLKD 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  R  + ++++  +V+DEAD ML+MGF+  ++ I S +P  RQTL
Sbjct: 123 GTQVIVGTPGRVMDHMRRKTVKVDHVLTVVLDEADEMLNMGFLEDMETILSQLPEERQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM   + +++  F ++P  + V     T   +   +     +   K  ++ +LL  
Sbjct: 183 MFSATMPQAIAEIARKFQKDPVTVRVIKKELTVPKVTQYYYEVKPK--NKVEVMSRLLDM 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  I+FCN K+ V +L   L+ +G+    +HG++ Q  R +++ +F+ G   ++VA
Sbjct: 241 Y-APKLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQVQRDRVMDSFRNGRTDILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR GKAF+LV  +++  +  I+
Sbjct: 300 TDVAARGIDVGDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVMGKEVYKLRDIQ 359

Query: 362 KLIEKKV 368
           +  + K+
Sbjct: 360 RYCKTKI 366


>gi|11121196|emb|CAC14786.1| DEAD box protein [Homo sapiens]
          Length = 455

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 222/368 (60%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 26  FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++  ++   +++  K   L  +L 
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDTYLVYIL- 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKESSILL 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378

Query: 361 EKLIEKKV 368
           E LI KK+
Sbjct: 379 EHLIGKKL 386


>gi|238920914|ref|YP_002934429.1| ATP-dependent RNA helicase SrmB [Edwardsiella ictaluri 93-146]
 gi|238870483|gb|ACR70194.1| ATP-dependent RNA helicase SrmB [Edwardsiella ictaluri 93-146]
          Length = 448

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 150/431 (34%), Positives = 234/431 (54%), Gaps = 13/431 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L L  +++ A+ D GY +PT IQI  IP  +   DV G A TGTGKTA+F+LP L 
Sbjct: 5   NFSELELDERLLDALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  ++ +L +  + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRVLILTPTRELAMQVADQARELARHTSLDITTITGGVSYINHAEIFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L +          +E L++DEADRMLDMGF   I+ +++   + RQT
Sbjct: 125 TNQDLVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFASDIETVSAETRWRRQT 184

Query: 181 LLFSATM-TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+ +D +   +   L +P  +    P    + I+  +    +    K ALL  LL
Sbjct: 185 LLFSATLESDAVHDFAARLLNDPVDVSAEPPRRERKKIQQWYYRADS-LKHKTALLCNLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  K+ +IF  +++ V  L   L + G   C + G + Q  R + +    +G + ++
Sbjct: 244 RQPDVTKS-VIFVRKRERVHELVTWLHQAGIQACFLEGEMVQAKRNEAIKRMLDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIPD+ HVFNFD+P  A+ Y+HRIGRT RAGR G A +L+   D   +  
Sbjct: 303 VATDVAARGLDIPDISHVFNFDMPRSADVYLHRIGRTARAGRKGTAISLIEAHDQLLLGK 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           + + +++ +   +  + +L P  +   +       KN   P K     R +K    QK  
Sbjct: 363 VSRYVQEPLK--SRVVDNLRPETKAPSL-------KNKGKPSKKVQAKRAQKKLDEQKKK 413

Query: 420 IPLKESEKISK 430
           +  K   + SK
Sbjct: 414 VKTKVRHRDSK 424


>gi|238650986|ref|YP_002916842.1| ATP-dependent RNA helicase RhlE [Rickettsia peacockii str. Rustic]
 gi|238625084|gb|ACR47790.1| ATP-dependent RNA helicase RhlE [Rickettsia peacockii str. Rustic]
          Length = 410

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 140/364 (38%), Positives = 215/364 (59%), Gaps = 13/364 (3%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +  LS +++  +      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP++    
Sbjct: 3   NFNLSEELIIVLETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLIDSFI 62

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           K +        LIL PTRELA Q+     K   +Y +  A+LIGG P   Q  +L++   
Sbjct: 63  KNKTTA-----LILVPTRELATQIHSTLNKVTTSYKINSAVLIGGAPMPKQFMQLKKNPK 117

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG    ++ I   +P  RQ L+FS
Sbjct: 118 VIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFS 177

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQSQ 242
           ATM   +  VS+ +L NP RI V   +  A  I  E   V+   ++S   AL +QL   +
Sbjct: 178 ATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFS---ALTKQLGNRE 234

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            ++   IIF   K++   L   L+ +  +  AIHG++ QR R +++ +F++   ++MVA+
Sbjct: 235 GSV---IIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVAT 291

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +D+    AI++
Sbjct: 292 DVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIRWRAIDR 351

Query: 363 LIEK 366
           L+ K
Sbjct: 352 LVNK 355


>gi|91781411|ref|YP_556617.1| ATP-dependent RNA helicase DbpA [Burkholderia xenovorans LB400]
 gi|91685365|gb|ABE28565.1| ATP-dependent RNA helicase DbpA [Burkholderia xenovorans LB400]
          Length = 467

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 219/392 (55%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P  +  +   GYV+ TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 11  FSQLSLPPATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+    R    + ++L PTRELA QV     +  +   N+ V  L GG P   Q   LE 
Sbjct: 71  LD---VRNFAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  RG L + ++  LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 128 GAHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVKQCPKERQTL 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K+S+ FL+NPK +++       +  +  +  T  +      LL    + 
Sbjct: 188 LFSATYPEGIVKLSQQFLRNPKEVKLAERHDNTKIRQRFYEVTEDERLHAVGLLLNHYRP 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+     FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 248 VSTLA----FCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L +  ++  + ++E
Sbjct: 304 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGSLE 363

Query: 362 KLIEKKVDWLN-GDLSS-----LNPPLEKIDI 387
           +  ++ V+W    +L++     L PP+E + I
Sbjct: 364 QAQKRDVEWHKLSELTATSNEPLLPPMETLQI 395


>gi|299142021|ref|ZP_07035155.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           C735]
 gi|298576483|gb|EFI48355.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           C735]
          Length = 625

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 141/375 (37%), Positives = 229/375 (61%), Gaps = 10/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+S  +  A+ + G+  P P+Q + IP +L  ++DV  +AQTGTGKTA+F LP+L 
Sbjct: 4   FEELGVSEDIRRAIEELGFEHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAFGLPLL- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
             +K  A+ R  + ++L PTREL  Q+AD+ + + K  N + +  + GG     Q + ++
Sbjct: 63  --QKVDAQNRATQAIVLSPTRELCVQIADDLKDFSKYINGMNIVPVYGGADIRPQIRTIK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGR++D  NRG + +N +  +V+DEAD ML+MGF   I  I   +P  R T
Sbjct: 121 HGVQIIVATPGRLVDLINRGVMELNQVNNVVLDEADEMLNMGFSDSINAIFEQLPDDRNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E++KV++++L + K I V + +  AE + H +   Y  +SK   L  + + 
Sbjct: 181 LLFSATMSREVEKVAKSYLHDYKEIVVGSRNEGAEHVNHIY---YLVHSKDKYLALKRIV 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIFC  K     +   L K G++  A+HG++ Q+ R   +  F++ T+QL+V
Sbjct: 238 DFHPRIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHTVQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G + +++  ++   +  I
Sbjct: 298 ATDVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHVKEKWKVRQI 357

Query: 361 EKLIEKKVDWLNGDL 375
           EK I K  D+++G+L
Sbjct: 358 EKQIGK--DFIDGEL 370


>gi|143456452|sp|Q0DB53|RH52A_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52A
 gi|51090883|dbj|BAD35456.1| putative DEAD-box protein 3 [Oryza sativa Japonica Group]
 gi|222635845|gb|EEE65977.1| hypothetical protein OsJ_21891 [Oryza sativa Japonica Group]
          Length = 602

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 154/398 (38%), Positives = 218/398 (54%), Gaps = 31/398 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL   V+  V   GY  PTP+Q  ++P+ L   D+   AQTG+GKTA+F LP+++ 
Sbjct: 86  FEAAGLVEAVLRNVARCGYESPTPVQRYSMPIALAGRDLMACAQTGSGKTAAFCLPVVSG 145

Query: 63  LEKG--------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
           L                 RA  + PR L+L PTRELAAQ+ +  +K+     L V +  G
Sbjct: 146 LVAAGGSGIGHRERSSFNRAAAK-PRALVLAPTRELAAQINEEAKKFSFQTGLRVVVAYG 204

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G P   Q + LERGAD+L+ TPGR++D   R K+ +  I+ LV+DEADRMLDMGF P I+
Sbjct: 205 GTPMYNQLRDLERGADILVATPGRLVDMVERSKVSLEAIKYLVMDEADRMLDMGFEPQIR 264

Query: 169 NITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
            I   +       RQT+LFSAT   E+Q+++ +FL N   I V    S+ + I    V  
Sbjct: 265 KIVERMNMPRKSVRQTMLFSATFPPEIQRLASDFLSNYIFITVGRVGSSTDLIMQK-VEL 323

Query: 225 YAQYSKKCALLQQLLQSQDTMKNG-------IIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
            +   K+  LL  L +    + N        ++F   K+   +L + L  +GF   AIHG
Sbjct: 324 LSDGEKRGYLLDLLQRQSVGVANSKLQQPLTLVFVETKREADSLRYWLYSKGFPATAIHG 383

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           +  Q+ R   L +FK G   +MVA+D+A+RGLD+P+V HV N+D+P   E+Y+HRIGRTG
Sbjct: 384 DRTQQERESALRSFKTGLTPIMVATDVASRGLDVPNVAHVINYDLPKSIEDYVHRIGRTG 443

Query: 338 RAGRHGKAFTLVAKEDIKHIDA-IEKLIEKK---VDWL 371
           RAG+ G A     + D       +E + E K    DWL
Sbjct: 444 RAGKAGSATAFFTESDHSLAKGLLELMTEAKQDVPDWL 481


>gi|308061601|gb|ADO03489.1| ATP-dependent RNA helicase [Helicobacter pylori Cuz20]
          Length = 492

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 82  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +   + T   I   F        ++   + +LL +Q
Sbjct: 198 FSATMPEPIKRLADRILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374

Query: 363 LIEKKVDWL 371
            I+ K++  
Sbjct: 375 EIDSKIELF 383


>gi|225437591|ref|XP_002277419.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743992|emb|CBI36962.3| unnamed protein product [Vitis vinifera]
          Length = 771

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 142/356 (39%), Positives = 213/356 (59%), Gaps = 4/356 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D G SP+++ A+   GY KPTPIQ +  P+VL   D+ GIA+TG+GKTA+FVLPM+  
Sbjct: 228 FEDCGFSPQLMNAITKQGYEKPTPIQCQAFPIVLSGRDIIGIAKTGSGKTAAFVLPMIVH 287

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++   A+   P  +I  PTRELA Q+    +K+ K Y + V+ + GG+    Q K+L+
Sbjct: 288 IMDQPELAKEEGPIGVICAPTRELAHQIYLESKKFAKPYGIRVSAIYGGMSKLEQFKELK 347

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G +++I TPGR++D      L M     LV+DEADRM D+GF P I++I   +   RQT
Sbjct: 348 SGCEIVIATPGRLIDMIKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 407

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  +++K++   L +P R+ V       E I        +   K   LL +L  
Sbjct: 408 LLFSATMPRKVEKLAREILTDPVRVTVGEVGMANEDITQVVQVIPSDAEKLPWLLDKLPG 467

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D   + ++F ++K  V  +   L ++G  + A+HG+ DQ SRM IL  FK G   +++
Sbjct: 468 MIDD-GDVLVFASKKATVDEIESQLGQKGLKIAALHGDKDQASRMDILQKFKSGIYHVLI 526

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIK 355
           A+D+AARGLDI  +  V NFD+    + ++HRIGRTGRAG + G A+TL+  ++ +
Sbjct: 527 ATDVAARGLDIKSIKSVVNFDIARDMDAHVHRIGRTGRAGDKDGTAYTLITHKEAR 582


>gi|16549139|dbj|BAB70762.1| unnamed protein product [Homo sapiens]
          Length = 455

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 142/368 (38%), Positives = 222/368 (60%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT IQI+ +PL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 26  FKDLGVT-DVLCEACDQLGWTKPTKIQIEAVPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++  ++   +++  K   L  +L 
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDTYLVYIL- 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378

Query: 361 EKLIEKKV 368
           E LI KK+
Sbjct: 379 EHLIGKKL 386


>gi|296210930|ref|XP_002752172.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
           [Callithrix jacchus]
          Length = 455

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 222/368 (60%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 26  FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++  ++   +++  K   L  +L 
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDTYLVYIL- 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378

Query: 361 EKLIEKKV 368
           E LI KK+
Sbjct: 379 EHLIGKKL 386


>gi|240172122|ref|ZP_04750781.1| putative ATP-dependent RNA helicase [Mycobacterium kansasii ATCC
           12478]
          Length = 504

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 146/375 (38%), Positives = 215/375 (57%), Gaps = 14/375 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LG+  ++V A+ + G   P  IQ  T+PL L   DV G A+TG GKT +F +P+L
Sbjct: 10  LSFAQLGVRDEIVRALREKGIEHPFAIQELTLPLALAGEDVIGQARTGMGKTFAFGVPLL 69

Query: 61  ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK------NYNLTVALLIGGIP 111
              T     R     PR L++ PTREL  QV D+     K         L+V  + GG  
Sbjct: 70  QRITSDTAARPLTGTPRALVVVPTRELCLQVTDDLATAAKYLTAEETRRLSVVSIYGGRA 129

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q + L  GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+ I 
Sbjct: 130 YEPQVEALRAGADVVVGTPGRLLDLSQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERIL 189

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYS 229
             +P  RQ++LFSATM D +  ++  F+  P  I    P S A  +T E      +A   
Sbjct: 190 RQIPAERQSMLFSATMPDPIITLARTFMVQPTHIRAEAPHSLAVHDTTEQFVYRAHAL-- 247

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            K  L+ ++LQ++D     +IF   K+    +   L+++GF+V A+HG++ Q +R K L 
Sbjct: 248 DKVELVSRILQARDRGAT-MIFTRTKRTAQKVADELKERGFAVGAVHGDLGQIAREKALK 306

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+ G + ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G A TLV
Sbjct: 307 AFRGGDVNVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLV 366

Query: 350 AKEDIKHIDAIEKLI 364
             +++     I+  +
Sbjct: 367 DWDELDRWTTIDTAL 381


>gi|86133373|ref|ZP_01051955.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
 gi|85820236|gb|EAQ41383.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
          Length = 606

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 138/367 (37%), Positives = 220/367 (59%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61
           F ++GL   ++ A+ D GY KPT IQ K IP ++    D+   AQTGTGKTA+F LP+L 
Sbjct: 4   FKEIGLKAPIIKALTDLGYEKPTVIQEKAIPQIISSDTDLKAFAQTGTGKTAAFSLPILE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           +LE+    V+    +IL PTRELA Q+ +N + + K   N+ V  + GG   E Q + L+
Sbjct: 64  LLEEDNNNVQ---AIILSPTRELAVQIGNNIKDFCKYLKNVKVTTVYGGSSMEDQIRSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G+ +++ TPGR +D  NR  L + N+  LV+DEAD ML+MGF   +  +    P T+QT
Sbjct: 121 KGSQIVVGTPGRTVDLINRRALKLGNVRWLVLDEADEMLNMGFKEELDKVLEATPETKQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT   E++ ++ N++  P  +     +S +E + H + A   + ++  AL +    
Sbjct: 181 LLFSATFPREVEAIARNYMTTPVEVTSGEKNSGSENVSHEYYAV-TERTRYPALKRIADL 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D     IIFC  ++    +  +L K G++  ++HG++ Q  R  ++  F++ TIQ++V
Sbjct: 240 NPDIY--AIIFCRTRRETQEVADNLIKDGYNADSLHGDLSQAQRDSVMGKFRKKTIQILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++ HV N  +P++ ENY HR GRTGRAG  G +  LV   +   +  I
Sbjct: 298 ATDVAARGLDVTELTHVINHKLPDQIENYTHRSGRTGRAGNKGVSIVLVNNREKGKLRVI 357

Query: 361 EKLIEKK 367
           E++I++K
Sbjct: 358 ERIIKQK 364


>gi|319951635|ref|YP_004162902.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM
           14237]
 gi|319420295|gb|ADV47404.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM
           14237]
          Length = 633

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 224/367 (61%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F  LGL   ++ A+ D G+  P+ +Q K IP++L    D+  +AQTGTGKTA+F  P++ 
Sbjct: 4   FEALGLKKSILDAITDMGFETPSDVQEKAIPILLGDDTDLVALAQTGTGKTAAFGFPLI- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120
             +K  A  R  + LIL PTREL  Q+ +  + Y K   N+ V  + GG     Q ++++
Sbjct: 63  --QKIDADSRTTQGLILSPTRELCLQITNEMQSYSKYEKNINVVAIYGGASITDQARQIK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +++ TPGR+ D  +RG + ++ I+  ++DEAD ML+MGF   I+ I S  P  + T
Sbjct: 121 RGAQIIVATPGRMKDMMSRGLVDISKIDYCILDEADEMLNMGFFEDIKEILSDTPKEKST 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  +++ F+++P+ I V   +S A T++H +     +   +   L++L  
Sbjct: 181 WLFSATMPREVATIAKKFMRSPQEITVGAKNSGASTVQHEYYVVSGR--DRYPALKRLAD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   + + +IFC  K++   +  SL + G++  A+HG++ Q  R  ++S+F++  IQ++V
Sbjct: 239 TNPDIFS-VIFCRTKRDTQKVAESLIEDGYNAGALHGDLSQNQRDLVMSSFRKKQIQILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV N+ +P+  E Y HR GRTGRAG+ G +  ++ + +++ I AI
Sbjct: 298 ATDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIITRSELRKIKAI 357

Query: 361 EKLIEKK 367
           E  I +K
Sbjct: 358 ENKIGQK 364


>gi|302840989|ref|XP_002952040.1| hypothetical protein VOLCADRAFT_81727 [Volvox carteri f.
           nagariensis]
 gi|300262626|gb|EFJ46831.1| hypothetical protein VOLCADRAFT_81727 [Volvox carteri f.
           nagariensis]
          Length = 622

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 212/373 (56%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G  P ++  +  AG+  PTPIQ +  P+ L   D+  IA+TG+GKT  F+LP +  
Sbjct: 124 FESVGFPPDILDEIRRAGFKYPTPIQAQAWPIALSGRDLVAIAKTGSGKTCGFLLPGMLH 183

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++ R   R  P  L+L PTRELA Q+    +K+G++  +    + GG P   Q + ++ 
Sbjct: 184 IQQTRKDPRSGPTLLVLAPTRELAVQIKTEADKFGRSSGIRNTCVYGGAPKGPQLRDIQH 243

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR+ D    G++ +  +  LV+DEADRMLDMGF P IQ I   +P  RQTL
Sbjct: 244 GVQIVIATPGRLNDFLEAGQVRLQQVSYLVLDEADRMLDMGFEPQIQRIVRTLPRQRQTL 303

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPS------STAETIEHCFVATYAQYSKKCALL 235
            FSAT   E++ ++  F+ N + + V          +     +H  V   +   +K   L
Sbjct: 304 FFSATWPREVKHIAAQFVVN-QTVHVFIGGVEEKLVANKSITQHVLVLNSSH--EKFGEL 360

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            ++++S+      IIFC  K+    L + + ++ F   AIHG+  Q  R  +L  FK+G 
Sbjct: 361 SRIIRSKPAGTRIIIFCTTKRMCDQLSYQMSRE-FRAAAIHGDKKQSERDYVLQAFKDGR 419

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+D+AARGLDIP+V  V NFD P   E+YIHRIGRTGRAG  G+AFT +  ED K
Sbjct: 420 TPILVATDVAARGLDIPNVAAVVNFDFPTGTEDYIHRIGRTGRAGATGEAFTFMTGEDAK 479

Query: 356 HI-DAIEKLIEKK 367
           H  D I+ + E +
Sbjct: 480 HARDLIQVMREAQ 492


>gi|182419575|ref|ZP_02950823.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
 gi|237668830|ref|ZP_04528814.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182376610|gb|EDT74185.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
 gi|237657178|gb|EEP54734.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 480

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 134/363 (36%), Positives = 219/363 (60%), Gaps = 6/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+   +S +++ AV   GY KP+ +Q K IP ++   DV   +QTG+GKTA+F +P   
Sbjct: 4   EFSKFNISEEILKAVDGLGYKKPSEVQEKVIPEIILNKDVIVKSQTGSGKTAAFAIP--- 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I EK       P+ L+L PTRELA QV+++F   G+   +    + G  P   Q + L++
Sbjct: 61  ICEKVDWNENAPQVLVLSPTRELAVQVSEDFVNIGRFKRIKSVAVFGKQPISEQARALKQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+  TPGR+LDH +RG L +  I+  VIDEAD ML+MGFI  ++ +   +P  + T 
Sbjct: 121 KTHVVCGTPGRVLDHIDRGSLDVKKIKYFVIDEADEMLNMGFIGQVEGVIRRLPKKKVTT 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT++DE++ + E ++  P  I +       + IEH     Y  Y+++  LL +LL  
Sbjct: 181 LFSATISDEIRTLCEKYMDRPVDISIEKQKVVNDNIEHGLY--YVDYNERFKLLNELLIC 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  +IF   K+NV  + + L+ +G+S   IHG + Q+ R+  + +F++G  +++ A
Sbjct: 239 EKP-ETAVIFGRTKENVDEIYNFLKSKGYSCGRIHGGMLQKERLSAMDSFRKGEFRILSA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV NF++P   E Y+HRIGR+GRAG+ GKA ++ +K   +++  IE
Sbjct: 298 TDVAARGIDIENITHVINFELPVEKEAYVHRIGRSGRAGKSGKAISICSKHGDRYLKNIE 357

Query: 362 KLI 364
           + I
Sbjct: 358 EYI 360


>gi|149372587|ref|ZP_01891699.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [unidentified eubacterium SCB49]
 gi|149354630|gb|EDM43194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [unidentified eubacterium SCB49]
          Length = 626

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 223/369 (60%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61
           F  LGL+ +++ A+ D G+  P+ +Q + IP++L+   D+  +AQTGTGKTA+F  PML 
Sbjct: 4   FKALGLNDELLQAITDMGFETPSEVQEQAIPILLEEDTDLVALAQTGTGKTAAFGFPML- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
             +K     R  + LIL PTREL  Q+ +  + YGK+   L V  + GG     Q ++++
Sbjct: 63  --QKIDVASRTTQGLILSPTRELCMQITNEMKSYGKHMKGLNVVAIYGGASISDQARQIK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA +++ TPGR+ D  +R  + ++ IE  V+DEAD ML+MGF   I  I S  P  + T
Sbjct: 121 KGAQIIVATPGRMKDMISRRMIDISKIEYCVLDEADEMLNMGFHEDITEILSHSPQEKST 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  +++ F+  P+ I V + ++ +E + H +    A+   +   L++L  
Sbjct: 181 WLFSATMPREVASIAKEFMYQPQEITVGSKNTGSENVTHEYYLVNAR--DRYQALKRLAD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   + + ++FC  K++   +   L + G+S  AIHG++ Q  R  ++  F+   IQ+MV
Sbjct: 239 ANPEIFS-VVFCRTKRDTQKVAEQLIQDGYSAGAIHGDLSQNQRDIVMKQFRSRQIQMMV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HV N+ +P+  E Y HR GRTGRAG  G +  +V+K +++ I +I
Sbjct: 298 ATDVAARGIDVDNITHVINYQLPDEVETYTHRSGRTGRAGNQGISIVIVSKSEVRKIRSI 357

Query: 361 EKLIEKKVD 369
           EK I+KK +
Sbjct: 358 EKKIQKKFE 366


>gi|147821303|emb|CAN74586.1| hypothetical protein VITISV_041989 [Vitis vinifera]
          Length = 771

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 142/356 (39%), Positives = 213/356 (59%), Gaps = 4/356 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D G SP+++ A+   GY KPTPIQ +  P+VL   D+ GIA+TG+GKTA+FVLPM+  
Sbjct: 228 FEDCGFSPQLMNAITKQGYEKPTPIQCQAFPIVLSGRDIIGIAKTGSGKTAAFVLPMIVH 287

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++   A+   P  +I  PTRELA Q+    +K+ K Y + V+ + GG+    Q K+L+
Sbjct: 288 IMDQPELAKEEGPIGVICAPTRELAHQIYLESKKFAKPYGIRVSAIYGGMSKLEQFKELK 347

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G +++I TPGR++D      L M     LV+DEADRM D+GF P I++I   +   RQT
Sbjct: 348 SGCEIVIATPGRLIDMIKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 407

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  +++K++   L +P R+ V       E I        +   K   LL +L  
Sbjct: 408 LLFSATMPRKVEKLAREILTDPVRVTVGEVGMANEDITQVVQVIPSDAEKLPWLLDKLPG 467

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D   + ++F ++K  V  +   L ++G  + A+HG+ DQ SRM IL  FK G   +++
Sbjct: 468 MIDD-GDVLVFASKKATVDEIESQLGQKGLKIAALHGDKDQASRMDILQKFKSGIYHVLI 526

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIK 355
           A+D+AARGLDI  +  V NFD+    + ++HRIGRTGRAG + G A+TL+  ++ +
Sbjct: 527 ATDVAARGLDIKSIKSVVNFDIARDMDAHVHRIGRTGRAGDKDGTAYTLITHKEAR 582


>gi|302759400|ref|XP_002963123.1| hypothetical protein SELMODRAFT_165735 [Selaginella moellendorffii]
 gi|302796878|ref|XP_002980200.1| hypothetical protein SELMODRAFT_153756 [Selaginella moellendorffii]
 gi|300151816|gb|EFJ18460.1| hypothetical protein SELMODRAFT_153756 [Selaginella moellendorffii]
 gi|300169984|gb|EFJ36586.1| hypothetical protein SELMODRAFT_165735 [Selaginella moellendorffii]
          Length = 574

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 143/376 (38%), Positives = 210/376 (55%), Gaps = 25/376 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + GLS +++ AV  AGY  P+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPMLT
Sbjct: 155 NWEEGGLSTELLKAVNKAGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLT 214

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + +            P  +++ PTRELA Q+ +   K+    ++ V  ++GG   E Q 
Sbjct: 215 YISRLPPMTEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLDIHVVSIVGGQSIEEQG 274

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            KL +G +++I TPGR+LD   R   ++N    +V+DEADRM+DMGF P +  +   +P 
Sbjct: 275 FKLRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 334

Query: 177 T-----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
           +                 R T +FSATM   +++++  +L+NP  + + T   T + I  
Sbjct: 335 SNLKPENEDAELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKTTDLITQ 394

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
             +    + S+K   LQ++L      K  I+F N KK    L   L+K G+ V  +HG  
Sbjct: 395 NVLMV--KDSEKLDRLQRMLNDLAD-KTAIVFVNTKKAADGLARQLDKLGYRVTTLHGGK 451

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q  R   L  F+      +VA+D+A RG+DIPDV HV NFD+PN  E Y HRIGRTGRA
Sbjct: 452 TQEQREISLEGFRSKRYNCLVATDVAGRGIDIPDVAHVINFDMPNNIEMYTHRIGRTGRA 511

Query: 340 GRHGKAFTLVAKEDIK 355
           G+ G A T +   D +
Sbjct: 512 GKTGVATTFLTLGDTE 527


>gi|90413445|ref|ZP_01221437.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90325533|gb|EAS42010.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 626

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 221/369 (59%), Gaps = 6/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L L+  ++ A+   G+V PTPIQ  +IPL+L   D  G AQTGTGKTA+F LP+L 
Sbjct: 7   EFRQLDLADTLLSALDSMGFVSPTPIQAASIPLLLTGVDALGKAQTGTGKTAAFSLPVLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++  + +   P+ +++ PTRELA QVA   +  G+N   L V  + GG     Q + L+
Sbjct: 67  KVDLSQHK---PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRALK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ D  +R +L ++ +   V+DEAD ML MGF+  +  I    P + Q 
Sbjct: 124 NGAHIVVGTPGRVKDLISRDRLHLDEVSTFVLDEADEMLKMGFVDDVTWIMEQAPASAQR 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++++ + FL++P+RI+V   + T   +   F     +  +K   + ++L+
Sbjct: 184 VLFSATMPPIVKQIVDRFLRSPERIDVAGENRTVSQVSQQF--WIVKGVEKDEAMIRMLE 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++ +   I+F   +++   L   L  +G    A+HG+I Q  R + + + K G I ++V
Sbjct: 242 TEENIDASIVFVRTRQDTERLADWLSSRGCKAAALHGDIPQSLRERTVDHIKRGVIDVLV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD+  + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  I
Sbjct: 302 ATDVVARGLDVQRITHVFNYDIPFDVESYIHRIGRTGRAGRSGKAILLVRTNQIRMLRTI 361

Query: 361 EKLIEKKVD 369
           E++ + +++
Sbjct: 362 ERVTKSRME 370


>gi|257054731|ref|YP_003132563.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
 gi|256584603|gb|ACU95736.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
          Length = 559

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 152/405 (37%), Positives = 231/405 (57%), Gaps = 19/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADLG+ P +V A+ ++G  +   IQ  T+PL L+  DV G A+TGTGKT  F +P+L  
Sbjct: 25  FADLGVHPDIVRALSESGIERTFDIQALTLPLALRGEDVIGQARTGTGKTLGFGVPLLQR 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++  G      P+ L++ PTREL  QV+ +  + GK   + +  + GG P+E+Q + L  
Sbjct: 85  LVTPGDG---TPQALVVVPTRELCLQVSQDLAEAGKYLGVRITSIYGGRPYESQIQSLRS 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV+I TPGR+LD   +  L++  I  LV+DEAD MLD+GF+P I+ I  +VP  RQT+
Sbjct: 142 GVDVVIGTPGRLLDLAEQRNLVLGKISTLVLDEADEMLDLGFLPDIERILRMVPEDRQTM 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCALLQQLLQ 240
           LFSATM   +  ++  FL+ P  I       T    E      Y  +S  K  L+ ++LQ
Sbjct: 202 LFSATMPGPILTLARTFLRQPTHIRAEA-GETGAIHERTTQFVYRAHSLDKPELIAKVLQ 260

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      +IF   K+    +   L ++GF+  A+HG++ Q +R + L  F+ G + ++V
Sbjct: 261 AEGRGLT-MIFTRTKRTAQKVADDLVERGFAAAAVHGDLGQGAREQALRAFRSGKVDILV 319

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV N+ +P   + Y+HRIGRTGRAGR G A TLV  +++      
Sbjct: 320 ATDVAARGIDVEGVTHVINYQMPEDEKTYVHRIGRTGRAGRTGVAITLVDWDEVPRW--- 376

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            KLI    D L  D+     P+E    ++H     +  IP+ +TG
Sbjct: 377 -KLIS---DELGLDMPE---PVETYSTSKHLFT--DLGIPEDATG 412


>gi|115452607|ref|NP_001049904.1| Os03g0308500 [Oryza sativa Japonica Group]
 gi|122247124|sp|Q10MH8|RH24_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 24
 gi|108707754|gb|ABF95549.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
           Japonica Group]
 gi|113548375|dbj|BAF11818.1| Os03g0308500 [Oryza sativa Japonica Group]
 gi|215737377|dbj|BAG96306.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 770

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 143/356 (40%), Positives = 217/356 (60%), Gaps = 4/356 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FAD G   +++ A+   GY KPT IQ + +P+VL   D+ GIA+TG+GKTA+FVLPM+  
Sbjct: 221 FADCGFPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVH 280

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++    +   P  ++  PTRELA Q+    +K+ K YNL VA + GG+    Q K+L+
Sbjct: 281 IMDQPELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKELK 340

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G +++I TPGR++D      L M     LV+DEADRM D+GF P I++I   +   RQT
Sbjct: 341 AGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 400

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  ++++++   L +P R+ V    S  E I+       +   K   LL++L  
Sbjct: 401 LLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKLPG 460

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D   + ++F  +K  V  +   L ++GF + A+HG+ DQ SRM+ L  FK G   ++V
Sbjct: 461 MIDD-GDVLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVLV 519

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIK 355
           A+D+AARGLDI  +  V NFD+    + +IHRIGRTGRAG + G A+TL+ +++++
Sbjct: 520 ATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEVR 575


>gi|313682085|ref|YP_004059823.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313154945|gb|ADR33623.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 458

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 142/354 (40%), Positives = 209/354 (59%), Gaps = 10/354 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++  +   GY +PTPIQ + IPLVL+  D+ G AQTGTGKTA+F LP++
Sbjct: 1   MSFTTLGLSAHLLETLSAKGYSEPTPIQAQVIPLVLRGRDILGAAQTGTGKTAAFALPII 60

Query: 61  TIL----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L    E G+A  R    LI+ PTRELA+QVA+    Y +   L    L GG     Q 
Sbjct: 61  QKLNASSESGQASAR---ALIIVPTRELASQVAEAIRSYAEGLELNCIALYGGANMARQA 117

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K+L  G D+++ TPGR+++   +G + ++ IE LV DEAD + DMGFI  +  I  L+P 
Sbjct: 118 KELSEGVDIIVATPGRLIELNKQGHVPLSRIEYLVFDEADTIFDMGFIREVGQIIDLLPL 177

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ +LFSATMT  ++++SE  L+ P  +E++   +   T+    V    +  +K  LL 
Sbjct: 178 NRQNMLFSATMTGAVKQLSEKILKKPLLVEIDNLKAADMTLRQ--VVHPVEKERKKELLS 235

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L+ S +  +  ++F   K     +   L   G     IHG+    +R + LS F+EG+ 
Sbjct: 236 FLIGSNNYPQV-LVFTRTKTEADEVSAELTASGLKNAVIHGDKKHGARDRALSEFREGSA 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           +++VA+D+AARGLDI  +  V N+D+P+ + +Y+HRIGRTGRAG  G A TL++
Sbjct: 295 RILVATDIAARGLDIEGLDVVINYDIPHVSTDYLHRIGRTGRAGNEGLAITLLS 348


>gi|15827355|ref|NP_301618.1| ATP-dependent RNA helicase [Mycobacterium leprae TN]
 gi|221229833|ref|YP_002503249.1| putative ATP-dependent RNA helicase [Mycobacterium leprae Br4923]
 gi|13092904|emb|CAC30321.1| putative ATP-dependent RNA helicase [Mycobacterium leprae]
 gi|219932940|emb|CAR70906.1| putative ATP-dependent RNA helicase [Mycobacterium leprae Br4923]
          Length = 544

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 161/467 (34%), Positives = 250/467 (53%), Gaps = 24/467 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA LG+  ++V A+ + G  +P  IQ  T+PL L   DV G A+TG GKT +F +P+L  
Sbjct: 34  FAKLGVRDEIVRALAERGIQQPFAIQELTLPLALAGDDVIGQARTGMGKTFAFGVPLLQR 93

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-------NYNLTVALLIGGIPF 112
            ++    R     PR L++ PTREL  QVAD+     K       N   +V  + GG  +
Sbjct: 94  ISVTTTARPLSGAPRGLVVVPTRELCLQVADDLATVAKYLTADDDNRRFSVVSIYGGRAY 153

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E Q + L+ GADV++ TPGR+LD   +G L ++ + +LV+DEAD MLD+GF P I+ +  
Sbjct: 154 EPQIEALQTGADVVVSTPGRLLDLCQQGHLQLSGLSVLVLDEADEMLDLGFFPDIERLLG 213

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYSK 230
            +P  RQ++LFSATM D +  ++  F+  P  I    P S A  +T +      +A    
Sbjct: 214 QIPTDRQSMLFSATMPDPIITLARTFMDQPIHIRAEAPHSLAVHDTTQQFVYRAHAL--D 271

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K  L+ ++LQ++      +IF   K+    + + L ++GF+V A+HG++ Q +R   L  
Sbjct: 272 KVELISRILQARGRGAT-MIFTRTKRTAQKVTNELNERGFAVGAVHGDLGQIARENALEA 330

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G + ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G A TLV 
Sbjct: 331 FRTGNVDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLVD 390

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            +++   + I+K +   +   +   +  N P    ++A    A      P+K+    RRK
Sbjct: 391 WDELHRWETIDKAL--GLGTPDPAETYSNSPHLYTELAIPAEASGTVGTPRKAQ-VKRRK 447

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
            +    KS     ++ K ++    +Q +       RG  P    P N
Sbjct: 448 TDRDGDKSGTS-AQAAKAARTSNSVQRHR-----IRGGQPVTGHPTN 488


>gi|295133956|ref|YP_003584632.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Zunongwangia
           profunda SM-A87]
 gi|294981971|gb|ADF52436.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Zunongwangia
           profunda SM-A87]
          Length = 598

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 223/369 (60%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LGL+  ++ A+ D G+  P+ +Q KTIP++L +  D+  +AQTGTGKTA+F  P++ 
Sbjct: 4   FQELGLNSSILKAIEDMGFESPSEVQEKTIPILLDEETDMVALAQTGTGKTAAFGFPLI- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
             +K   + +  + LIL PTREL  Q+ +  + Y K   +L    + GG     Q K++E
Sbjct: 63  --QKIDPKSKHTQALILSPTRELCLQITNELKNYSKYEPSLHPVAVYGGASITDQAKQIE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +++ TPGR+ D   R    ++ IE  V+DEAD ML+MGF   I  I S  P  + T
Sbjct: 121 RGAQIIVATPGRMQDMIRRKLTDISKIEYCVLDEADEMLNMGFYEDITAILSHTPKEKNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  +++ F++NP  + V + +  A  + H F    A+   + A L++L  
Sbjct: 181 WLFSATMPKEVATIAKKFMRNPVEVTVGSKNMGATNVSHEFYLVNAR--DRYAALKRLAD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   + + +IFC  K++   +   L + G+S  A+HG++ Q  R  ++ +F+   IQ++V
Sbjct: 239 ANPDIFS-VIFCRTKRDTQKVAERLIEDGYSAAALHGDLSQNQRDLVMKSFRTRQIQMLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV N+ +P+  E Y HR GRTGRAG+ G +  +V+K +++ I +I
Sbjct: 298 ATDVAARGIDVDDITHVINYQLPDEVETYTHRSGRTGRAGKLGTSMVIVSKSELRKIKSI 357

Query: 361 EKLIEKKVD 369
           E++I++  D
Sbjct: 358 ERIIKQSFD 366


>gi|222624792|gb|EEE58924.1| hypothetical protein OsJ_10575 [Oryza sativa Japonica Group]
          Length = 696

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 143/356 (40%), Positives = 217/356 (60%), Gaps = 4/356 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FAD G   +++ A+   GY KPT IQ + +P+VL   D+ GIA+TG+GKTA+FVLPM+  
Sbjct: 147 FADCGFPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVH 206

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++    +   P  ++  PTRELA Q+    +K+ K YNL VA + GG+    Q K+L+
Sbjct: 207 IMDQPELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKELK 266

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G +++I TPGR++D      L M     LV+DEADRM D+GF P I++I   +   RQT
Sbjct: 267 AGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 326

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  ++++++   L +P R+ V    S  E I+       +   K   LL++L  
Sbjct: 327 LLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKLPG 386

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D   + ++F  +K  V  +   L ++GF + A+HG+ DQ SRM+ L  FK G   ++V
Sbjct: 387 MIDD-GDVLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVLV 445

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIK 355
           A+D+AARGLDI  +  V NFD+    + +IHRIGRTGRAG + G A+TL+ +++++
Sbjct: 446 ATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEVR 501


>gi|239503259|ref|ZP_04662569.1| Cold-shock DEAD box protein A(ATP-dependent RNA helicasedeaD)
           [Acinetobacter baumannii AB900]
          Length = 586

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 143/378 (37%), Positives = 227/378 (60%), Gaps = 15/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP L  
Sbjct: 5   FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 64

Query: 63  L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111
           L          E+ +A V  P  L+L PTRELA QV+ +   + ++   + +A ++GG+P
Sbjct: 65  LAGQDTFVPFKERMKA-VTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           F  Q ++L +GA V++ TPGR+LD  NR +L ++ ++ L++DEADRMLD+GF   ++ I+
Sbjct: 124 FGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 182

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            L     QTL+FSAT  D + +++E  +  P+RI + T  ST   I      T     KK
Sbjct: 183 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 242

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L   L  + +T+   ++F + +++   L   L + G SV A+HG + Q  R + L + 
Sbjct: 243 KLLTHWL--ADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 300

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL   
Sbjct: 301 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATY 360

Query: 352 EDIKHIDAIEKLIEKKVD 369
            +   I A+E  +E +++
Sbjct: 361 RERGKIRALEDYLEARLN 378


>gi|297612409|ref|NP_001068490.2| Os11g0689400 [Oryza sativa Japonica Group]
 gi|77552592|gb|ABA95389.1| retrotransposon protein, putative, unclassified, expressed [Oryza
           sativa Japonica Group]
 gi|255680379|dbj|BAF28853.2| Os11g0689400 [Oryza sativa Japonica Group]
          Length = 1398

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 139/372 (37%), Positives = 224/372 (60%), Gaps = 14/372 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G  P+++  +  AG++ PTPIQ +T P+ LQ  D+  IA+TG+GKT  +++P  
Sbjct: 604 MTFEATGFPPEILQEIHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTLGYLIPAF 663

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L + +    + P  L+L PTRELA+Q+ D   K+G++  ++   L GG     Q ++L
Sbjct: 664 IHLRRYQNNPMLGPTVLVLAPTRELASQIQDEAVKFGRSSRVSCTCLYGGTSKGLQLREL 723

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGAD+++ TPGR+ D     K+ ++ +  LV+DEADRMLDMGF P I+ I   +P  RQ
Sbjct: 724 ERGADIVVATPGRLNDILEMRKISLHQVSFLVLDEADRMLDMGFEPQIRKIVDEIPRNRQ 783

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS---KKCALLQ 236
           TL+++AT   E+ K++ + L++P ++ +    S  E + +  +  Y +      K   L+
Sbjct: 784 TLMYTATWPKEVTKIAGDLLKDPVQVNI---GSIDELVANKSITQYVEVVPPLDKQRRLE 840

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK---QGFSVCAIHGNIDQRSRMKILSNFKE 293
           Q+L++Q+     IIFC+ KK    +C  L +   + F   +IHG+  Q  R  +L+ F+ 
Sbjct: 841 QILRAQERGSKVIIFCSTKK----MCDQLARDIGRSFGAASIHGDKSQAERDNVLNQFRT 896

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G ++T  +++D
Sbjct: 897 GRAPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQD 956

Query: 354 IKHIDAIEKLIE 365
            K+   + K++E
Sbjct: 957 WKYAGDLVKVLE 968


>gi|291566695|dbj|BAI88967.1| ATP-dependent RNA helicase [Arthrospira platensis NIES-39]
          Length = 484

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 146/361 (40%), Positives = 221/361 (61%), Gaps = 6/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+S +    +   G+ +PTP+QI+ IP +L   DV G+AQTGTGKTA+F LP+L  
Sbjct: 24  FESLGISEQRARHLETLGFTEPTPVQIQAIPEMLSGRDVVGMAQTGTGKTAAFSLPILEQ 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++   A ++    L+L PTRELA QV +    +  +  L V  + GG   + Q ++L RG
Sbjct: 84  IDVHAAGIQ---ALVLTPTRELAMQVKEAIRTFSDDNALYVLTVYGGQSIDRQIQRLRRG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPFTRQTL 181
             V++ TPGRILD  NRG+L ++ +  LV+DEAD ML MGFI  ++ I  S     RQT 
Sbjct: 141 VQVVVGTPGRILDLLNRGELKLDLLRWLVLDEADEMLSMGFIQDVEKILESADSEHRQTA 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   + K+    L++P  ++V TP +T + IE         +SK  AL + +L+ 
Sbjct: 201 FFSATMDASISKLVRRHLKSPVTVKVETPKATPKRIEQSVYMVPRGWSKARAL-EPILEL 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D  ++ IIF   K++  +L + L+  G SV   HGN++Q  R ++L   +   ++ +VA
Sbjct: 260 EDP-ESAIIFVRTKQSAADLTNQLQAAGHSVDEYHGNLNQSQRERLLMRLRRRQVRWIVA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P++ ++Y+HRIGRTGRAGR GKA TL+   D + +  IE
Sbjct: 319 TDIAARGLDVDHLTHVINYDLPDQVDSYVHRIGRTGRAGREGKAITLIQPIDRRKLRNIE 378

Query: 362 K 362
           +
Sbjct: 379 R 379


>gi|308809810|ref|XP_003082214.1| MGC81303 protein (ISS) [Ostreococcus tauri]
 gi|116060682|emb|CAL57160.1| MGC81303 protein (ISS) [Ostreococcus tauri]
          Length = 382

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 225/369 (60%), Gaps = 15/369 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA LGL  ++V A  + G+ +P+ IQ K+IP  LQ  DV G+AQTG+GKT +F LP+L +
Sbjct: 21  FASLGLCKELVSACEELGWREPSAIQQKSIPEALQGRDVIGLAQTGSGKTGAFALPILQS 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L++ R       +LIL PTRELA Q+A+  E  G+   +  A L+GGI   +Q   L +
Sbjct: 81  LLDEPRTY----HSLILSPTRELAIQIAEQVEALGRGIGVRTATLVGGIEMTSQAIMLGK 136

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR++DH    K   +  +++LV+DEADR+L++ F   I  I  ++P  R+T
Sbjct: 137 RPHVVVGTPGRVVDHLENTKGFGLKALKVLVLDEADRLLNLDFEEEIDKILRVIPQDRRT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L++P ++EV+   ST +++   ++   A++ K C      L 
Sbjct: 197 QLFSATMTSKVQKLQRACLRDPVKVEVSAKYSTVDSLRQHYLFIPAKH-KDC--YATYLF 253

Query: 241 SQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++ +    I+F   C+Q + +  +  +L   GF    IHG + Q  R+  L  FK G   
Sbjct: 254 NELSASTLIVFARTCDQTRKLALIARNL---GFGAVPIHGQMSQPKRIAALQKFKAGERN 310

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLDIP V  V N+DVP  +++Y+HR+GRT RAGR G A T+V + D++  
Sbjct: 311 ILIATDVASRGLDIPSVDVVINYDVPQNSKDYVHRVGRTARAGRSGLAVTMVTQYDVELY 370

Query: 358 DAIEKLIEK 366
             IE+LI K
Sbjct: 371 QKIERLINK 379


>gi|224024964|ref|ZP_03643330.1| hypothetical protein BACCOPRO_01695 [Bacteroides coprophilus DSM
           18228]
 gi|224018200|gb|EEF76198.1| hypothetical protein BACCOPRO_01695 [Bacteroides coprophilus DSM
           18228]
          Length = 423

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 153/433 (35%), Positives = 246/433 (56%), Gaps = 21/433 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L   V+ A+    + + TP+Q  TIP++L+  D+ G+AQTGTGKTA+++LP+L
Sbjct: 1   MQFSELNLEDSVLDALDAMNFRECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL---TVALLIG--GIPFEAQ 115
             L KG         +I+ PTRELA Q+    E  G +Y +   +VA+  G  GI FE +
Sbjct: 61  NQLSKGNYPEDAINCIIMAPTRELAMQIDQQME--GFSYFMPASSVAVYGGNDGIRFEQE 118

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P
Sbjct: 119 KKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFAEDIMQIVKYLP 178

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT++FSATM  ++Q++++  L NP  +++       + I+  ++   AQ   K  ++
Sbjct: 179 KERQTIMFSATMPTKIQQLAKTILTNPVEVKLAVSKPAEKIIQAAYICYEAQ---KLGII 235

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + L + Q   +  IIF + K  V  +  +L++   +V  +H ++DQ  R  I+  F+ G 
Sbjct: 236 ESLFKEQQP-ERVIIFASSKIKVKEVTKALKRLKLNVGEMHSDLDQSQREAIMHEFRNGR 294

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V++ +  
Sbjct: 295 INMLVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGCAITFVSETEQN 354

Query: 356 HIDAIEKLIEKKVDWLN-----GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
               IE  +EK++  +      G+  + NP   K      + + K     ++S   +RR+
Sbjct: 355 KFKQIENFLEKEIYKIPVPEELGEAPAYNPRSAKPKGNSQSASGK-----KRSCNGNRRR 409

Query: 411 KNYSSQKSHIPLK 423
           K  S+  S  P K
Sbjct: 410 KKKSAPASPSPAK 422


>gi|295696219|ref|YP_003589457.1| DEAD/DEAH box helicase domain protein [Bacillus tusciae DSM 2912]
 gi|295411821|gb|ADG06313.1| DEAD/DEAH box helicase domain protein [Bacillus tusciae DSM 2912]
          Length = 526

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 153/360 (42%), Positives = 221/360 (61%), Gaps = 7/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS +V  A+ D G+ +P+PIQ   IPLVLQ  DV G AQTGTGKTA+F +P++ +
Sbjct: 4   FTDFQLSRRVQQAIDDMGFEEPSPIQAACIPLVLQGKDVIGQAQTGTGKTAAFGVPIIEM 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +  GR      + LIL PTRELA QVA    K  K   +    + GG     Q + L++G
Sbjct: 64  MGTGR----HVQALILTPTRELAIQVAGELRKIAKYARVRTLPIYGGQSIGHQIRALQQG 119

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH  RG L ++ +  +V+DEAD MLDMGFI  I+ I    P  RQTLL
Sbjct: 120 VGVVIGTPGRVLDHLRRGTLKLDKVRTVVLDEADEMLDMGFIEDIEAILKETPQERQTLL 179

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT   E+++++  +++NP+ + VN    T   I+  +     +   K   L +++ S+
Sbjct: 180 FSATFPHEVKQLAVRYMKNPEHVTVNRGEMTVPLIDQIYYKVLER--NKLESLCRIIDSE 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D +  GIIFC  K+ V  L  +L  +G+ V  +HG++ Q  R +++  F+ G I+ +VA+
Sbjct: 238 D-VSLGIIFCRTKRGVDELTEALLARGYLVDGLHGDLSQAQRDRVMKKFRNGDIEFLVAT 296

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+D+ +V HV N+D+P   E+Y+HRIGRTGRAGR G A TLV   + K +  IE+
Sbjct: 297 DVAARGIDVTNVTHVINYDIPQDPESYVHRIGRTGRAGRRGLAITLVTPREFKLLKQIER 356


>gi|163750312|ref|ZP_02157553.1| ATP-dependent RNA helicase SrmB [Shewanella benthica KT99]
 gi|161329984|gb|EDQ00969.1| ATP-dependent RNA helicase SrmB [Shewanella benthica KT99]
          Length = 421

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 220/368 (59%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P ++ ++   G+ KPT IQ +TIPL +++ D+   A TGTGKTASF+LP +
Sbjct: 12  MLFEDFLLDPILLESLKAMGHKKPTTIQQQTIPLAMEQKDILARAPTGTGKTASFLLPAI 71

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I++  R      R L+L PTRELA+Q+           +L + ++ GG+P+  Q + L
Sbjct: 72  QHIIDFPRRFSGQARVLVLTPTRELASQIHRYASHLSTGLDLNIVIITGGMPYGPQEEAL 131

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   D+L+ TPGR++++ ++G      +E+ VIDEADRMLDMGF   ++ +       +Q
Sbjct: 132 KNNVDILVATPGRLMEYLDKGNFNAEEVEVFVIDEADRMLDMGFSAAVETLAIESVGRKQ 191

Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           T+LFSAT+   ++ + S   L +P ++E   P S    I H ++        K A+L  +
Sbjct: 192 TMLFSATLEGSDVGRFSHQLLTDPVKVEAEAPRSEKAKI-HQWIHIADNKEHKFAMLCNI 250

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ +D  +  I+F   ++ V +L   L+++G +   + G+++Q+ R + L  F +G + +
Sbjct: 251 LRQEDVTRT-IVFVKTREGVASLEGLLQREGITCSFMRGDMEQKQRFQALGRFTKGEVSV 309

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+ ++ HV NFD+P  A+ Y+HRIGRT RAG  G A +LV   DI+ + 
Sbjct: 310 LLATDVAARGIDVDNISHVINFDMPRSADTYVHRIGRTARAGAKGTAISLVEAHDIRVVG 369

Query: 359 AIEKLIEK 366
            IE+ I++
Sbjct: 370 KIERYIDQ 377


>gi|169632326|ref|YP_001706062.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii SDF]
 gi|169151118|emb|CAO99784.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii]
          Length = 619

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 145/390 (37%), Positives = 233/390 (59%), Gaps = 15/390 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP L  
Sbjct: 9   FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 68

Query: 63  L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111
           L          E+ +A V  P  L+L PTRELA QV+ +   + ++   + +A ++GG+P
Sbjct: 69  LAGQDTFVPFKERMKA-VTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 127

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           F  Q ++L +GA V++ TPGR+LD  NR +L ++ ++ L++DEADRMLD+GF   ++ I+
Sbjct: 128 FGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 186

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            L     QTL+FSAT  D + +++E  +  P+RI + T  ST   I      T   +  K
Sbjct: 187 DLAVNRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDG-FEHK 245

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL   L + +T+   ++F + +++   L   L + G SV A+HG + Q +R + L + 
Sbjct: 246 KKLLTHWL-ADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTARNRRLRSI 304

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL   
Sbjct: 305 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATY 364

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
            +   I A+E  +E +++    +    +PP
Sbjct: 365 RERGKIRALEDYLEARLNVSEIEGLEASPP 394


>gi|297562761|ref|YP_003681735.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296847209|gb|ADH69229.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 516

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 135/348 (38%), Positives = 205/348 (58%), Gaps = 10/348 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           +S ++  A+   G ++P  IQ   +P+ L   D+ G A+TGTGKT +F LP+L   +K  
Sbjct: 1   MSTELADALEAEGIIEPFLIQELALPIALGGSDIIGQARTGTGKTLAFGLPLLQRAQKDP 60

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
              + PR L++ PTRELA QVA +     K     +  + GG  +E Q   L+ G DV++
Sbjct: 61  GTPKRPRALVVVPTRELAIQVAADLTTASKRSGTRILTVYGGRSYEPQVNGLKEGTDVVV 120

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+LD   +  L ++ +  +V+DEAD+MLD+GF+P I+ I +  P  RQT+LFSATM
Sbjct: 121 GTPGRLLDLEKQKHLRLDGVSAVVLDEADKMLDLGFLPDIERILTRTPDDRQTMLFSATM 180

Query: 188 TDELQKVSENFLQNPKRI------EVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
             E+  +S  +L+ P  +      E++  + T +  +H F         K  +L +LLQ+
Sbjct: 181 PSEIVSLSRKYLRRPTHVRASDDDEIDGSAITGQITQHAF---RTHQMDKIEMLARLLQA 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D  ++ ++FC  K+    +   LE +GF+V A+HG++ Q  R + L  F+ G I ++VA
Sbjct: 238 SDHGQS-MVFCQTKRACDRVAGDLEARGFAVAAVHGDLGQSQRERALRAFRNGKINILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +D+AARGLD+ DV HV N++ P   + Y HRIGRTGRAGR G A T V
Sbjct: 297 TDVAARGLDVDDVTHVVNYETPEDEKTYTHRIGRTGRAGRSGTAVTFV 344


>gi|212693337|ref|ZP_03301465.1| hypothetical protein BACDOR_02849 [Bacteroides dorei DSM 17855]
 gi|212664102|gb|EEB24674.1| hypothetical protein BACDOR_02849 [Bacteroides dorei DSM 17855]
          Length = 423

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 149/426 (34%), Positives = 241/426 (56%), Gaps = 19/426 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L   V+ A+    + + TP+Q  TIP++L+  D+ G+AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELNLEEGVLQALDAMRFEECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL---TVALLIG--GIPFEAQ 115
             L KG         +I+ PTRELA Q+    E  G +Y L   +VA+  G  G+ FE +
Sbjct: 61  NQLSKGGYPEDAINCVIMSPTRELAQQIDQQME--GFSYFLPASSVAVYGGNDGVRFEQE 118

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P
Sbjct: 119 KKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYLP 178

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT++FSATM  ++Q++++  L NP  I++       + I+  ++    Q   K  ++
Sbjct: 179 KERQTIMFSATMPAKIQQLAKTILNNPVEIKLAVSKPAEKIIQTAYICYERQ---KLGII 235

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L Q Q T +  IIF + K  V  +  + ++   +V  +H +++Q  R +I+  FK G 
Sbjct: 236 QSLFQDQ-TPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGR 294

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I +++A+D+ +RG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V++++  
Sbjct: 295 INILIATDIVSRGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANHDGCAITFVSEKEQT 354

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
              AIE  + + +  +        P  E++  A   + R          G  R++ NY  
Sbjct: 355 QFKAIENFLGRNIYKI--------PVPEELGEAPEYNPRSGAGRSNHKGGSSRKQGNYKG 406

Query: 416 QKSHIP 421
           +K+  P
Sbjct: 407 KKNGTP 412


>gi|294637622|ref|ZP_06715901.1| putative ATP-dependent RNA helicase [Edwardsiella tarda ATCC 23685]
 gi|291089177|gb|EFE21738.1| putative ATP-dependent RNA helicase [Edwardsiella tarda ATCC 23685]
          Length = 448

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 136/354 (38%), Positives = 207/354 (58%), Gaps = 4/354 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L L  +++ A+ D GY +PT IQI  IP  +   DV G A TGTGKTA+F+LP L 
Sbjct: 5   NFSELELDERLLDALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  ++  L +  + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELARHTTLDITTITGGVSYINHAEIFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L +         ++E L++DEADRMLDMGF   I+ + +   + +QT
Sbjct: 125 TNQDMVVATPGRLLQYIKEENFDCRSVETLILDEADRMLDMGFAKDIETVAAETRWRKQT 184

Query: 181 LLFSATM-TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+ +D +   ++  L++P  +    P    + I+  +    +    K ALL  LL
Sbjct: 185 LLFSATLESDAVHDFADRLLEDPVDVSAEPPRRERKKIQQWYYRADS-LKHKTALLCHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  K+ +IF  +++ V  L   L + G   C + G + Q  R + +    +G + ++
Sbjct: 244 RQPDVTKS-VIFVRKRERVHELVTWLHQAGIQACFLEGELVQAKRNEAIKRMLDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+AARGLDIPD+ HVFNFD+P  A+ Y+HRIGRT RAGR G A +L+   D
Sbjct: 303 VATDVAARGLDIPDISHVFNFDMPRSADVYLHRIGRTARAGRKGTAISLIEAHD 356


>gi|291392610|ref|XP_002712705.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1
           [Oryctolagus cuniculus]
          Length = 455

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 222/368 (60%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 26  FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVHCAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++  ++   +++  K   L  +L 
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDTYLVYIL- 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378

Query: 361 EKLIEKKV 368
           E LI KK+
Sbjct: 379 EHLIGKKL 386


>gi|298489929|ref|YP_003720106.1| DEAD/DEAH box helicase domain-containing protein ['Nostoc azollae'
           0708]
 gi|298231847|gb|ADI62983.1| DEAD/DEAH box helicase domain protein ['Nostoc azollae' 0708]
          Length = 513

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 139/362 (38%), Positives = 211/362 (58%), Gaps = 5/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LG+S + V  +    +  PT IQ + IP +L   DV G +QTGTGKTA+F LPML
Sbjct: 3   LTFQELGISQERVEILEKLSFTTPTNIQTQAIPQLLAGRDVVGQSQTGTGKTAAFSLPML 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  +  V+    ++L PTRELA QV D   ++  N  L V  + GG   + Q  +L+
Sbjct: 63  EKLDVSKKAVQ---AVVLTPTRELAMQVHDAISQFMGNDGLRVLAIYGGQSIDRQMMQLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++D   RG L ++ ++  V+DEAD ML MGFI  +  I S  P  RQT
Sbjct: 120 RGVHVVVGTPGRVIDLLERGSLKLDQVKWFVLDEADEMLSMGFIDDVIRILSQAPTERQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++++   FL +P  + V  P +    I          ++K  A LQ +L+
Sbjct: 180 ALFSATMPPSIRQLVNKFLNSPVTVTVEQPKAAPNKINQVAYLIPRHWTKAKA-LQPILE 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D  +  +IF   ++    L + L+  G SV   HG++ Q++R ++L+ F+   ++ +V
Sbjct: 239 MEDP-ETALIFVRTRRTAAELTNQLQAAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV NFD+P+  E Y+HRIGRTGRAG+ G A +LV   + +   A 
Sbjct: 298 ATDIAARGLDVDLLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQAF 357

Query: 361 EK 362
           E+
Sbjct: 358 ER 359


>gi|27229058|ref|NP_080636.2| probable ATP-dependent RNA helicase DDX47 [Mus musculus]
 gi|52782790|sp|Q9CWX9|DDX47_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
           Full=DEAD box protein 47
 gi|26345792|dbj|BAC36547.1| unnamed protein product [Mus musculus]
 gi|26368455|dbj|BAB26843.2| unnamed protein product [Mus musculus]
 gi|66365081|gb|AAH95944.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
 gi|124297422|gb|AAI32243.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
 gi|124298172|gb|AAI32245.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
 gi|148678592|gb|EDL10539.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_b [Mus
           musculus]
          Length = 455

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 222/370 (60%), Gaps = 13/370 (3%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 26  FKDLGVT-DVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQL 238
            LFSATMT ++QK+    L+NP +  V++   T E ++  + F+ +  + +    +L +L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 261

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +     + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +
Sbjct: 262 AGN-----SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++   
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376

Query: 359 AIEKLIEKKV 368
            IE LI KK+
Sbjct: 377 RIEHLIGKKL 386


>gi|254228859|ref|ZP_04922281.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262396791|ref|YP_003288644.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|151938536|gb|EDN57372.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262340385|gb|ACY54179.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
          Length = 416

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 150/370 (40%), Positives = 219/370 (59%), Gaps = 19/370 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL P +V  +    Y +PTPIQ  TIP +L+  D+ G A TG+GKTA+F LP+L  
Sbjct: 10  FADLGLIPTLVERLEALEYSQPTPIQSHTIPYILEGKDIVGGANTGSGKTAAFSLPILQK 69

Query: 63  L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-----TVALLIGGIPFE 113
           +    E    R      LIL PTRELA+QVA N + Y  +Y+L     TVA+  GG+   
Sbjct: 70  IVQQDETNHRRGNFVSHLILVPTRELASQVAYNVKSY--SYHLRDKIKTVAVF-GGVSVN 126

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  G D+++ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  I +L
Sbjct: 127 PQMLALRGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILAL 186

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKC 232
           +P  +QTLLFSAT  D++  +S++ L++P  +EV   S+ A T ++  F     +   K 
Sbjct: 187 LPEKKQTLLFSATFPDKVTTLSQHLLRDP--VEVQLQSAEASTLVQRVFSVNKGE---KT 241

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           A+L  L++ Q   +  +IF N K    +L   L K+G +    HG+  Q +R ++L  FK
Sbjct: 242 AVLAHLIK-QHQWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFK 300

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G IQ+++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G   +L+  +
Sbjct: 301 SGEIQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYD 360

Query: 353 DIKHIDAIEK 362
           D  H   IEK
Sbjct: 361 DYHHFKVIEK 370


>gi|281424769|ref|ZP_06255682.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           F0302]
 gi|281401139|gb|EFB31970.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           F0302]
          Length = 625

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 141/375 (37%), Positives = 229/375 (61%), Gaps = 10/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+S  +  A+ + G+  P P+Q + IP +L  ++DV  +AQTGTGKTA+F LP+L 
Sbjct: 4   FEELGVSEDIRRAIEELGFEHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAFGLPLL- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
             +K  A+ R  + ++L PTREL  Q+AD+ + + K  N + +  + GG     Q + ++
Sbjct: 63  --QKVDAQNRATQAIVLSPTRELCVQIADDLKDFSKYINGMNIVPVYGGADIRPQIRTIK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGR++D  NRG + +N +  +V+DEAD ML+MGF   I  I   +P  R T
Sbjct: 121 HGVQIVVATPGRLVDLINRGVMELNQVNNVVLDEADEMLNMGFSDSINAIFEQLPDDRNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E++KV++++L + K I V + +  AE + H +   Y  +SK   L  + + 
Sbjct: 181 LLFSATMSREVEKVAKSYLHDYKEIVVGSRNEGAEHVNHIY---YLVHSKDKYLALKRIV 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIFC  K     +   L K G++  A+HG++ Q+ R   +  F++ T+QL+V
Sbjct: 238 DFHPRIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHTVQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G + +++  ++   +  I
Sbjct: 298 ATDVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHVKEKWKVRQI 357

Query: 361 EKLIEKKVDWLNGDL 375
           EK I K  D+++G+L
Sbjct: 358 EKQIGK--DFIDGEL 370


>gi|157964817|ref|YP_001499641.1| ATP-dependent RNA helicase RhlE [Rickettsia massiliae MTU5]
 gi|157844593|gb|ABV85094.1| ATP-dependent RNA helicase RhlE [Rickettsia massiliae MTU5]
          Length = 415

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 142/375 (37%), Positives = 219/375 (58%), Gaps = 13/375 (3%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +  LS +++ A+      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP++    
Sbjct: 8   NFNLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLIDSFI 67

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           K +        LIL PTRELA Q+     K   +Y +  A+LIGG P   Q  +L++   
Sbjct: 68  KNKTTA-----LILVPTRELATQIHSTLNKVTISYKINSAVLIGGEPMPKQFMQLKKNPK 122

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG    ++ I   +P  RQ L+FS
Sbjct: 123 VIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFS 182

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQSQ 242
           ATM   +  VS+ +L NP RI V   +  A  I  E   V+   ++S+   L +QL   +
Sbjct: 183 ATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFSE---LTKQLGNRE 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            ++   IIF   K++   L   L+ +  +  AIHG++ QR R +++ +F++   ++MVA+
Sbjct: 240 GSV---IIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVAT 296

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +D+    AI++
Sbjct: 297 DVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGYALSFISPDDVIRWHAIDR 356

Query: 363 LIEKKVDWLNGDLSS 377
           L+ K    L  +  S
Sbjct: 357 LVNKGESTLRSEFRS 371


>gi|160876752|ref|YP_001556068.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS195]
 gi|160862274|gb|ABX50808.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315268952|gb|ADT95805.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 419

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 215/368 (58%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P ++ ++   G+  PT IQ +TIP  L++ D+   A TGTGKTASF+LP L
Sbjct: 1   MQFEDFQLDPSLLESLNAMGHHSPTTIQQETIPSALEQRDILARAPTGTGKTASFLLPSL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +++  R      R LIL PTRELA+Q+            L +A++ GG+P+  Q + L
Sbjct: 61  QHLIDFPRRFAGQARILILTPTRELASQIHRYACHLATGQGLDIAIVTGGVPYGPQEEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+L+ TPGR++++ ++G      ++IL+IDEADRMLDMGF   +Q I       +Q
Sbjct: 121 AGNVDILVATPGRLMEYLDKGNFNAQEVDILIIDEADRMLDMGFSSVVQAIAIEAQGRKQ 180

Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            +LFSAT+    +Q+ +   L +P  I+V  P S    I H ++        K ALL  L
Sbjct: 181 NMLFSATLEGGGVQRFAREVLNDPIEIDVEAPRSEKAKI-HQWIHLADDKEHKFALLCHL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ +D +K  I+F   +  V +L   L K G     + G+++Q+ R + LS F +G + +
Sbjct: 240 LRQED-VKRTIVFVKTRDIVSSLEGQLLKVGIPCAFMRGDMEQKKRFQALSRFTKGEVNV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI D+ HV NFD+P  A+ YIHRIGRTGRAG  G A +L    D++ + 
Sbjct: 299 LLATDVAARGIDIDDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVG 358

Query: 359 AIEKLIEK 366
            IE+ IE+
Sbjct: 359 KIERYIEQ 366


>gi|299829301|ref|NP_001015005.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Rattus norvegicus]
 gi|149049184|gb|EDM01638.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_a [Rattus
           norvegicus]
          Length = 455

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 222/370 (60%), Gaps = 13/370 (3%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 26  FKDLGVT-DVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQL 238
            LFSATMT ++QK+    L+NP +  V++   T E ++  + F+ +  + +    +L +L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 261

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +     + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +
Sbjct: 262 AGN-----SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++   
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376

Query: 359 AIEKLIEKKV 368
            IE LI KK+
Sbjct: 377 RIEHLIGKKL 386


>gi|149279609|ref|ZP_01885738.1| ATP-dependent RNA helicase [Pedobacter sp. BAL39]
 gi|149229645|gb|EDM35035.1| ATP-dependent RNA helicase [Pedobacter sp. BAL39]
          Length = 620

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 137/367 (37%), Positives = 231/367 (62%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F  LG+S  VV AV D G+  PTPIQ ++IP++L+  +D  G+AQTGTGKTA+F LP+L 
Sbjct: 5   FKLLGISDDVVNAVKDLGFENPTPIQEQSIPVLLEGNNDFVGLAQTGTGKTAAFGLPLLE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
           +++    +   P+ LIL PTREL  Q+ ++ + + KN +   V  + GG     Q +++ 
Sbjct: 65  LID---FKSNKPQALILCPTRELCLQITNDIKNFSKNTSGANVVAVYGGANIMQQLREIR 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGR+LD   R  +   N++ +V+DEAD ML+MGF   I +I S  P  ++T
Sbjct: 122 NGVQIVVATPGRMLDIIGRKAIDFTNVKYVVLDEADEMLNMGFQEDINDILSTTPDDKKT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E++++++N++ +P  + + T ++    IEH +    A+   K A L++++ 
Sbjct: 182 WLFSATMPPEVRRIAKNYMDSPVELTMGTKNTGNVNIEHEYYTVRAR--DKYAALKRIVD 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  G++FC  K +  ++   L K G++  A+HG++ Q+ R K++  F++  +QL++
Sbjct: 240 FNPEIF-GVVFCKTKMDTQDVAEHLIKDGYNADALHGDLSQQQRDKVMQRFRDRHMQLLI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ +V HV N+ +P+  E+Y HR GRTGRAG+ G +  +V  ++I  I  I
Sbjct: 299 ATDVAARGIDVNNVTHVINYSLPDEIESYTHRSGRTGRAGKTGISICIVNSKEIGKIRQI 358

Query: 361 EKLIEKK 367
           E++I K+
Sbjct: 359 ERIIGKQ 365


>gi|261211120|ref|ZP_05925409.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC341]
 gi|260839621|gb|EEX66232.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC341]
          Length = 460

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 142/367 (38%), Positives = 224/367 (61%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P+++  +   G+   TPIQ +++P +L   DV G  +TG+GKTA+F L +L+ 
Sbjct: 6   FAALNLKPELLANLETMGFASMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLSN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+    L+L PTRELA QVA +    G+  +N+ V  L GG+P   Q   LE 
Sbjct: 66  LNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRTIHNIKVLTLCGGMPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH ++ ++ ++ +  LV+DEADRML+MGF   ++ I +  P  RQTL
Sbjct: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++++  +N   I+V     T+ +I   F       ++  AL   LL  
Sbjct: 183 LFSATYPASIEQIAQSVTRNAMMIKVEATHDTS-SIRQYFYKVDGSAARDEALETLLLHH 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q T  + ++FCN K+ V N+  +L + GFSV  +HG+++QR R + L  F   +I ++VA
Sbjct: 242 QPT--SSVVFCNTKREVKNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFN+D+    E ++HRIGRTGRAG  G AF+  +  +   +  I+
Sbjct: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359

Query: 362 KLIEKKV 368
           + ++ ++
Sbjct: 360 EYMDIEI 366


>gi|240103967|ref|YP_002960276.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Thermococcus
           gammatolerans EJ3]
 gi|239911521|gb|ACS34412.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Thermococcus
           gammatolerans EJ3]
          Length = 403

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 146/381 (38%), Positives = 219/381 (57%), Gaps = 11/381 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           M F  LGLS   + AV   G+  PT IQ + IP +L+   D+ G +QTGTGKTA+F LP+
Sbjct: 12  MSFERLGLSESSLEAVRRKGFEVPTDIQREVIPRLLEGEVDIIGQSQTGTGKTAAFALPI 71

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  ++     V+    +IL PTRELA QVA+  +       + V  + GG P   Q + L
Sbjct: 72  IEAIDPNEKTVQ---AIILTPTRELALQVANEIKSLRGKKRVYVYAIYGGQPIGPQIRAL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG  V++ TPGR+LDH NRG L ++++   V+DEADRMLDMGF+  I+ I    P  ++
Sbjct: 129 ERGVHVVVGTPGRVLDHLNRGTLDLSSVRFFVLDEADRMLDMGFVDDIEEIMRRAPQEKR 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM   +  +++ +++NP+ I V+      E ++  +V      ++K   L+++L
Sbjct: 189 ILMFSATMPMGILLLAKKYMRNPEVILVSRDEVVPEMVDQEYVEVLP--ARKYEKLKEVL 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC+ K+    L   L +  F   A++G++ Q +R +    FKEG I ++
Sbjct: 247 GEGFY---GIIFCHTKRETRELSERLRRDSFRADALNGDMSQAARERTFGRFKEGKINVL 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ ++ HV N+ +P   E YIHRIGRTGR G+ GKA T +   +I     
Sbjct: 304 VATDVAARGLDVREISHVINYSLPMNTEQYIHRIGRTGRMGKRGKAITFLKPGEIGRFRD 363

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           I +  + KV+     LS   P
Sbjct: 364 IAR--KAKVEVKRSKLSERIP 382


>gi|50311527|ref|XP_455788.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660268|sp|Q6CJV1|DRS1_KLULA RecName: Full=ATP-dependent RNA helicase DRS1
 gi|49644924|emb|CAG98496.1| KLLA0F15752p [Kluyveromyces lactis]
          Length = 748

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 148/384 (38%), Positives = 220/384 (57%), Gaps = 16/384 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  V+  +   GY  P+PIQ   IP+ L   D+   A TG+GKTA+F++P++  
Sbjct: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           L    A +   R ++L PTRELA QVAD  +  GK  N LT  L +GG+    Q + L+ 
Sbjct: 295 LLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKT 354

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR +DH  N     ++++EILVIDEADRML+ GF   +Q I SL+P  RQT
Sbjct: 355 RPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQT 414

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  +++++    L+ P RI ++ P   A+ +   F+    +   K ALL QL++
Sbjct: 415 LLFSATMNSKIKQLISLSLKKPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIR 474

Query: 241 SQD--TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             D  + K  ++F  +K+    L   L   G  V  +HG++ Q  R++ ++NFK   + +
Sbjct: 475 KLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPV 534

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH-- 356
           ++ +DLA+RGLDIP +  V NFD+P   E Y+HR+GRT RAGR G++ T V +       
Sbjct: 535 LICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRSI 594

Query: 357 ----IDAIE------KLIEKKVDW 370
               I ++E      K + + VDW
Sbjct: 595 VRSAIRSVEENAESGKALSRNVDW 618


>gi|322795370|gb|EFZ18163.1| hypothetical protein SINV_10215 [Solenopsis invicta]
          Length = 410

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 140/363 (38%), Positives = 217/363 (59%), Gaps = 7/363 (1%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           GL   +    +D  + +PT IQ + IPL LQ  DV G+A+TG+GKTA+F LP+L  L + 
Sbjct: 1   GLVDTLCKTCIDLKWKEPTRIQQEAIPLTLQGKDVIGLAETGSGKTAAFALPILQALLEQ 60

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
             R      LIL PTRELA Q+++ F+  G +  +   +L+GG+   AQ   LE+   ++
Sbjct: 61  PQRYF---ALILTPTRELAFQISEQFDALGSSMGVKTVVLVGGMDMHAQGMILEKKPHII 117

Query: 127 ICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+TLLFSA
Sbjct: 118 IATPGRLVDHLENTKGFNLRQLKFLVMDEADRILNMDFEVEVDKILRVIPRERRTLLFSA 177

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           TMT ++QK+    L+NP R+EV+T   T E ++  ++    ++ K   L+  L  ++   
Sbjct: 178 TMTKKVQKLQRASLRNPVRVEVSTKYQTVEKLQQYYIFIPVKF-KDVYLVHIL--NELAG 234

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
            + +IFC    N V     L   GF+   +HG + Q  R+  L+ FK     +++++D+A
Sbjct: 235 NSFMIFCGTCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILISTDVA 294

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLDIP V  V NFD+P  +++YIHR+GRT RAGR G++ T V + D++    IE+LI 
Sbjct: 295 SRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLIS 354

Query: 366 KKV 368
           K++
Sbjct: 355 KQL 357


>gi|298695355|gb|ADI98577.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 487

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 144/366 (39%), Positives = 215/366 (58%), Gaps = 15/366 (4%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++  +  G+  V+   +LIL 
Sbjct: 2   GFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKV-VGKQGVQ---SLILA 57

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA QVA+   ++ +   + V  + GG+P E Q K L++G  +++ TPGR++DH NR
Sbjct: 58  PTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNR 117

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQTLLFSATMTDELQKVSENF 198
             L  + I  L++DEAD M++MGFI  ++ I   +P   RQT+LFSATM   +Q + + F
Sbjct: 118 RTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQF 177

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           +++PK I+      +   IE  +  T  +  +K       L      +  I+F   K+ V
Sbjct: 178 MKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNFLDVHQP-ELAIVFGRTKRRV 234

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA+D+AARGLDI  V HV+
Sbjct: 235 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 294

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE    +K       +S+L
Sbjct: 295 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRK-------MSAL 347

Query: 379 NPPLEK 384
            PP  K
Sbjct: 348 RPPHRK 353


>gi|215482158|ref|YP_002324340.1| Cold-shock DEAD box protein A(ATP-dependent RNA helicasedeaD)
           [Acinetobacter baumannii AB307-0294]
 gi|332868649|ref|ZP_08438296.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013113]
 gi|213986281|gb|ACJ56580.1| Cold-shock DEAD box protein A(ATP-dependent RNA helicasedeaD)
           [Acinetobacter baumannii AB307-0294]
 gi|332733221|gb|EGJ64416.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013113]
          Length = 586

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 143/378 (37%), Positives = 227/378 (60%), Gaps = 15/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP L  
Sbjct: 5   FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 64

Query: 63  L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111
           L          E+ +A V  P  L+L PTRELA QV+ +   + ++   + +A ++GG+P
Sbjct: 65  LAGQDTFVPFKERMKA-VTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           F  Q ++L +GA V++ TPGR+LD  NR +L ++ ++ L++DEADRMLD+GF   ++ I+
Sbjct: 124 FGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 182

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            L     QTL+FSAT  D + +++E  +  P+RI + T  ST   I      T     KK
Sbjct: 183 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 242

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L   L  + +T+   ++F + +++   L   L + G SV A+HG + Q  R + L + 
Sbjct: 243 KLLTHWL--ADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 300

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL   
Sbjct: 301 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATY 360

Query: 352 EDIKHIDAIEKLIEKKVD 369
            +   I A+E  +E +++
Sbjct: 361 RERGKIRALEDYLEARLN 378


>gi|88803270|ref|ZP_01118796.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
 gi|88780836|gb|EAR12015.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
          Length = 609

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 140/367 (38%), Positives = 221/367 (60%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F +LGL   +  A+ D GY +PT IQ K IP ++  R D+   AQTGTGKTA+F LP+L 
Sbjct: 4   FLELGLKEPINKALTDLGYEQPTVIQEKAIPQIISSRSDLKAFAQTGTGKTAAFSLPILE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           +L+     V+    +IL PTRELA Q+ +N + + K   ++ V  + GG   E Q + L+
Sbjct: 64  LLDSNSGNVQ---AIILSPTRELAVQIGNNIKDFCKYLPDVKVTTVYGGSSMEDQIRSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG+ +++ TPGR +D   R  L + N++ LV+DEAD ML+MGF   +  +    P T+QT
Sbjct: 121 RGSQIVVGTPGRTVDLIKRRALKLGNVKWLVLDEADEMLNMGFKDELDKVLEATPDTKQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT   E++ +++N++  P  I     +  A+++ H + +   + ++  AL +    
Sbjct: 181 LLFSATFPKEVESIAKNYMTKPVEITSGQKNQGADSVSHEYYSV-TERTRYPALKRIADL 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D     IIFC  ++    +  +L K G+S  A+HG++ Q  R  ++  F++ TIQ++V
Sbjct: 240 NPDIY--AIIFCRTRRETQEVADNLIKDGYSADALHGDLSQGQRDSVMGKFRKKTIQILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++ HV N  +P++ ENY HR GRTGRAG  G +  LV  ++   +  I
Sbjct: 298 ATDVAARGLDVTELTHVINHKLPDQIENYTHRSGRTGRAGNTGISIVLVNGKEKGKLRPI 357

Query: 361 EKLIEKK 367
           EK+I+KK
Sbjct: 358 EKIIQKK 364


>gi|73996620|ref|XP_863121.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 7 [Canis familiaris]
          Length = 810

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 152/419 (36%), Positives = 227/419 (54%), Gaps = 47/419 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLMP 452

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +G      P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q  +L 
Sbjct: 453 LFLNQG------PYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 506

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--- 177
            G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P +   
Sbjct: 507 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 566

Query: 178 -----------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA 214
                                  RQT++F+ATM   +++++ ++L+ P  + + +     
Sbjct: 567 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 626

Query: 215 ETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
           E +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK G++ 
Sbjct: 627 ERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKMGYNA 681

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHR
Sbjct: 682 CTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHR 741

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
           IGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     AQH 
Sbjct: 742 IGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHK 794


>gi|301765212|ref|XP_002918022.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
           [Ailuropoda melanoleuca]
          Length = 455

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 222/370 (60%), Gaps = 13/370 (3%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 26  FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQL 238
            LFSATMT ++QK+    L+NP +  V++   T E ++  + F+ +  + +    +L +L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 261

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +     + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +
Sbjct: 262 AGN-----SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++   
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376

Query: 359 AIEKLIEKKV 368
            IE LI KK+
Sbjct: 377 RIEHLIGKKL 386


>gi|213158663|ref|YP_002319961.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057]
 gi|213057823|gb|ACJ42725.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057]
          Length = 383

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 144/374 (38%), Positives = 223/374 (59%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++  A+   G+ + TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 5   FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     ++ R R   PR LIL PTRELA Q+  + +   K  NL +  L+GG+ F+ Q K
Sbjct: 65  LLNNPVQEQRFRGE-PRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKK 123

Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +L+    D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P 
Sbjct: 124 QLDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPR 183

Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTL+FSAT T ++  ++  +L  P  +E+     T   +E        Q   K  L
Sbjct: 184 KEQRQTLMFSATFTYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQ--DKYRL 241

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ +L+ ++ +   +IF N++  V  L   L+K G+ V  + G I Q  R+K+L  FK+G
Sbjct: 242 LQDILR-EEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQG 300

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +M+A+D+A RG+ +  V HV NF +P ++++Y+HRIGRTGRAG  G + + ++++D 
Sbjct: 301 KHNIMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDA 360

Query: 355 KHIDAIEKLIEKKV 368
            ++  IEK I KK+
Sbjct: 361 FYLPEIEKAIGKKL 374


>gi|19114747|ref|NP_593835.1| ATP-dependent RNA helicase Rrp3 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|74654514|sp|Q9P6N8|RRP3_SCHPO RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|7708606|emb|CAB90153.1| ATP-dependent RNA helicase Rrp3 (predicted) [Schizosaccharomyces
           pombe]
          Length = 465

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 153/409 (37%), Positives = 230/409 (56%), Gaps = 13/409 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG+  ++  A    G+  PTPIQ + IP+VL + DV G+AQTG+GKTA+F LP++  
Sbjct: 48  FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L    +       ++L PTRELA Q+++ FE  G +  +   +++GG+    Q   L + 
Sbjct: 108 LWNNPSPFF---AVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKK 164

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             VL+CTPGR++DH    K   + N++ L++DEADR+LDM F P I  I  ++P  R+TL
Sbjct: 165 PHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTL 224

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT +++K+    L  P R+ V++  ST +T+   ++  +  +  K   L  L+ +
Sbjct: 225 LFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYL--FFPFKHKDTYLVYLV-N 281

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + IIF     +   L   L   GFS   +HG + Q +R+  L+ FK G    +VA
Sbjct: 282 ELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVA 341

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP V  V N+D+P  ++ YIHR+GRT RAGR GK+  LV + D++    IE
Sbjct: 342 TDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFLRIE 401

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
             I KK+     D   +    E++  AQ         I Q     DRRK
Sbjct: 402 ATIGKKMQEYEIDKEGVFLLSERVGEAQR------EAIIQMKEIHDRRK 444


>gi|262401852|ref|ZP_06078417.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC586]
 gi|262351824|gb|EEZ00955.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC586]
          Length = 460

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 224/368 (60%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P+++  +   G+   TPIQ +++P +L   DV G  +TG+GKTA+F L +L+ 
Sbjct: 6   FAALNLKPELLANLETMGFASMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLSN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+    L+L PTRELA QVA +    G+  +N+ V  L GG+P   Q   LE 
Sbjct: 66  LNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRTIHNIKVLTLCGGMPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH ++ ++ ++ +  LV+DEADRML+MGF   ++ I +  P  RQTL
Sbjct: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++V+++  +N   I+V     T+ +I   F       ++  AL   LL  
Sbjct: 183 LFSATYPASIEQVAQSVTRNAMMIKVAATHDTS-SIRQYFYNVDGSTARDEALETLLLHH 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q T  + ++FCN K+ V N+  +L + GFSV  +HG+++QR R + L  F   +I ++VA
Sbjct: 242 QPT--SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFN+D+    E ++HRIGRTGRAG  G AF+  +  +   +  I+
Sbjct: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359

Query: 362 KLIEKKVD 369
           + ++  ++
Sbjct: 360 EYMDIAIE 367


>gi|218192669|gb|EEC75096.1| hypothetical protein OsI_11255 [Oryza sativa Indica Group]
          Length = 1023

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 143/356 (40%), Positives = 217/356 (60%), Gaps = 4/356 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FAD G   +++ A+   GY KPT IQ + +P+VL   D+ GIA+TG+GKTA+FVLPM+  
Sbjct: 233 FADCGFPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVH 292

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++    +   P  ++  PTRELA Q+    +K+ K YNL VA + GG+    Q K+L+
Sbjct: 293 IMDQPELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKELK 352

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G +++I TPGR++D      L M     LV+DEADRM D+GF P I++I   +   RQT
Sbjct: 353 AGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 412

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  ++++++   L +P R+ V    S  E I+       +   K   LL++L  
Sbjct: 413 LLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLLSDAEKMPWLLEKLPG 472

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D   + ++F  +K  V  +   L ++GF + A+HG+ DQ SRM+ L  FK G   ++V
Sbjct: 473 MIDD-GDVLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVLV 531

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIK 355
           A+D+AARGLDI  +  V NFD+    + +IHRIGRTGRAG + G A+TL+ +++++
Sbjct: 532 ATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEVR 587


>gi|150025863|ref|YP_001296689.1| DEAD-box ATP dependent DNA helicase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772404|emb|CAL43884.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
           [Flavobacterium psychrophilum JIP02/86]
          Length = 644

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 137/371 (36%), Positives = 224/371 (60%), Gaps = 12/371 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61
           F  LGL+  ++ A++D G+  PT +Q K IP++L++  D+  +AQTGTGKTA+F  P   
Sbjct: 4   FEQLGLTESLLRAIIDLGFENPTEVQEKAIPMLLEKDIDLVALAQTGTGKTAAFGFP--- 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +++K  A  R  + LIL PTREL  Q+ +   N+ KY K  N  V  + GG     Q + 
Sbjct: 61  VIQKIDANNRNTQALILSPTRELCLQITNELKNYSKYEKGIN--VVAVYGGASITEQARD 118

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++RGA +++ TPGR+ D  NR  + ++ I   ++DEAD ML+MGF   I NI S  P  +
Sbjct: 119 IKRGAQIIVATPGRMQDMINRRLVDISQINYCILDEADEMLNMGFYEDIVNILSTTPDEK 178

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            T LFSATM  E+ ++ + F+ +P  I V   +S + T+ H +    A+   +   L++L
Sbjct: 179 NTWLFSATMPAEVARIGKQFMTDPIEITVGAKNSGSATVSHEYYLVNAR--DRYEALKRL 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +   + + ++FC  K++   +   L + G+S  A+HG++ Q  R  ++  F+   IQ+
Sbjct: 237 ADANPDIFS-VVFCRTKRDTQAVAEKLVEDGYSAAALHGDLSQAQRDGVMKAFRGRQIQM 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ +V HV N+ +P+  E Y HR GRTGRAG+ G +  +V K +I+ I 
Sbjct: 296 LVATDVAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSEIRKIS 355

Query: 359 AIEKLIEKKVD 369
           +IE++I++K +
Sbjct: 356 SIERIIKQKFE 366


>gi|307566011|ref|ZP_07628469.1| putative ATP-dependent RNA helicase RhlE [Prevotella amnii CRIS
           21A-A]
 gi|307345199|gb|EFN90578.1| putative ATP-dependent RNA helicase RhlE [Prevotella amnii CRIS
           21A-A]
          Length = 567

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 139/373 (37%), Positives = 228/373 (61%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  + K TP+Q K IPL+L+  D+  +AQTGTGKTA+++LP+L
Sbjct: 1   MYFDELDLNDDVLDALYDMHFDKCTPVQEKCIPLILKGKDILAVAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIP---FEAQN 116
           + L KG         +I+ PTRELA Q+    + +    N ++   + GG     ++ + 
Sbjct: 61  SKLAKGNYADDAINCVIMSPTRELAQQIDQAIQGFSYYLNGISCVAVYGGNDGNRYDQEI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  GA+++I TPGR++ H + G + ++ +   V+DEADRMLDMGF   I+ I + +P 
Sbjct: 121 KSLSMGANIVIATPGRLISHISLGNVDLSKVSFFVLDEADRMLDMGFSEDIKMIANNLPK 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + QT++FSATM ++++ ++++ L+N + I++   S  AE I+      Y   ++K  +++
Sbjct: 181 SCQTIMFSATMPNKIESLAKSLLKNAEIIKL-AVSKPAEKIQQSAYICYE--TQKIGIIK 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++ +S + +K  IIF   K+ V  +  SL KQ      +H ++DQ  R  ++  FK   I
Sbjct: 238 EIFKSGN-LKRVIIFSGSKQKVKKITASLNKQNIKCGEMHSDLDQAQRDDVMFKFKSSQI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ ARG+DI D+  V N+DVP+  E+Y+HRIGRT RA R G A T V++EDI +
Sbjct: 297 DVLVATDIVARGIDIDDIAMVINYDVPHDVEDYVHRIGRTARADREGNAITFVSEEDIYY 356

Query: 357 IDAIEKLIEKKVD 369
              IE  ++K +D
Sbjct: 357 FRHIESFLKKTID 369


>gi|295134684|ref|YP_003585360.1| ATP-dependent RNA helicase [Zunongwangia profunda SM-A87]
 gi|294982699|gb|ADF53164.1| ATP-dependent RNA helicase [Zunongwangia profunda SM-A87]
          Length = 447

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 224/370 (60%), Gaps = 6/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L+  +  A+ + G  KPTPIQ +    V+   DV GIAQTGTGKT +++LP+L
Sbjct: 1   MSFQDLNLNTPLRNALEEMGIQKPTPIQEQAFAPVMSGRDVVGIAQTGTGKTYAYLLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  + +   PR LI+ PTREL  QV +  +K  K  NL VA + GG+    Q ++L+
Sbjct: 61  RMLKFSKQK--NPRILIMVPTRELVVQVVEEIDKLAKYINLRVAGIYGGVNINTQQQELQ 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+++ TP R+ D   R  + + +I+  VIDE D MLD+GF   + NI  L+P  RQ+
Sbjct: 119 RGLDIVVATPRRLYDLVLRRAVQLKSIQKFVIDEVDVMLDLGFKFQVNNIIELLPPNRQS 178

Query: 181 LLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           ++FSATMT+ +++ ++ENF   P++I +    +  + I+         ++ K  LL+ L 
Sbjct: 179 IMFSATMTETVEEMINENF-NAPEKISIAVSGTPLDNIQQQGY-ILPNFNTKANLLKHLF 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             ++T K  +IF + K+    L  SL +K    V  +H    Q  R+K + +F EG  ++
Sbjct: 237 SDKETFKKILIFISDKRIADRLFDSLGQKFPGEVSLVHTGKSQNYRLKNVEDFDEGLTRI 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+D+ ARGLD+  V HV NFD PN  ENY+HRIGRTGRA + G +     +++++++ 
Sbjct: 297 MIATDVMARGLDLDAVSHVINFDTPNYPENYMHRIGRTGRAEKKGNSILFTTEKELEYLK 356

Query: 359 AIEKLIEKKV 368
           AIE+L++ +V
Sbjct: 357 AIEELMKMEV 366


>gi|237710076|ref|ZP_04540557.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA]
 gi|237723636|ref|ZP_04554117.1| ATP-dependent RNA helicase [Bacteroides sp. D4]
 gi|265753725|ref|ZP_06089080.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA]
 gi|229437984|gb|EEO48061.1| ATP-dependent RNA helicase [Bacteroides dorei 5_1_36/D4]
 gi|229456169|gb|EEO61890.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA]
 gi|263235439|gb|EEZ20963.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA]
          Length = 423

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 149/426 (34%), Positives = 241/426 (56%), Gaps = 19/426 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L   V+ A+    + + TP+Q  TIP++L+  D+ G+AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELNLEEGVLQALDAMRFEECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL---TVALLIG--GIPFEAQ 115
             L KG         +I+ PTRELA Q+    E  G +Y L   +VA+  G  G+ FE +
Sbjct: 61  NQLSKGGYPEDAINCVIMSPTRELAQQIDQQME--GFSYFLPASSVAVYGGNDGVRFEQE 118

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P
Sbjct: 119 KKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYLP 178

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT++FSATM  ++Q++++  L NP  I++       + I+  ++    Q   K  ++
Sbjct: 179 KERQTIMFSATMPAKIQQLAKTILNNPVEIKLAVSKPAEKIIQTAYICYERQ---KLGII 235

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L Q Q T +  IIF + K  V  +  + ++   +V  +H +++Q  R +I+  FK G 
Sbjct: 236 QSLFQDQ-TPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGR 294

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I +++A+D+ +RG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V++++  
Sbjct: 295 INILIATDIVSRGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANHDGCAITFVSEKEQT 354

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
              AIE  + + +  +        P  E++  A   + R          G  R++ NY  
Sbjct: 355 QFKAIENFLGRNIYKI--------PVPEELGEAPEYNPRSGAGRSNHKGGSSRKQGNYKG 406

Query: 416 QKSHIP 421
           +K+  P
Sbjct: 407 KKNGTP 412


>gi|168186565|ref|ZP_02621200.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
           Eklund]
 gi|169295454|gb|EDS77587.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
           Eklund]
          Length = 371

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 215/364 (59%), Gaps = 6/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF +LG+S  ++  +   G   PTPIQ  +I  + +  DV   AQTGTGKT +F+LP   
Sbjct: 3   DFKNLGISKNIIDVLSREGIKSPTPIQENSIEFIRKGKDVIAEAQTGTGKTLAFLLP--- 59

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I E         + LI+ PTRELA Q+ +   K  K  ++ +    GG   ++Q KKL+ 
Sbjct: 60  IFENISLESNFVQVLIVTPTRELAIQITEEAMKLKKAKDINILAAYGGKDIQSQLKKLKG 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH NR  + ++ ++ LV+DEAD+ML MGF   ++ I +      QTL
Sbjct: 120 NIQLIIATPGRLLDHLNRSTIKLDKLKTLVLDEADQMLYMGFKNEVEKIINYTSKKYQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E++K++  ++++PK + V T   T + I+  FV       K+ +L + L + 
Sbjct: 180 CFSATMNSEVKKLAYRYMKDPKVVSVKTEEITLKNIKQ-FVVETTDRRKQDSLCKVLDED 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              M   IIFC  K+ V NL  +L K+G++   +HG++ Q  R +++  FK    Q ++A
Sbjct: 239 NPFM--AIIFCRTKRRVDNLEEALHKRGYNCSKLHGDLAQSKRERVMKKFKNMDTQYLIA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+++D+P  AE+YIHRIGRTGRAG  GK    +  +D + ++ IE
Sbjct: 297 TDVAARGLDITGVTHVYSYDIPENAESYIHRIGRTGRAGEEGKTCLFIDPKDKRLLETIE 356

Query: 362 KLIE 365
           K I+
Sbjct: 357 KEIK 360


>gi|319426890|gb|ADV54964.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 427

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 143/362 (39%), Positives = 208/362 (57%), Gaps = 10/362 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LG+   ++  + +  YV PTP+Q  TIP VL   DV   A TG+GKTA+F +P+L  L  
Sbjct: 14  LGIIAPLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVD 73

Query: 66  GRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKLE 120
            +   +     R L+L PTRELA QVAD+F  Y  + N  L +    GG+   AQ + L 
Sbjct: 74  AKTEDKTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQSLR 133

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GADVL+ TPGR+LD  +   + +N +  LV+DEADRML +GF   +  +   +P  +QT
Sbjct: 134 SGADVLVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELTQVLDALPVKKQT 193

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  +E+++++   L NP   ++    S  E+  H  V T  +   K ALL  L++
Sbjct: 194 LLFSATFPEEVRELTAKLLNNPLEYQLQ---SEQESTIHQRVITVNR-PMKTALLAHLIK 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      +IF + K    +L   L K+G +    HG+  Q +R ++L  FK G I +++
Sbjct: 250 -EHLWSQALIFVSAKNTCNHLAQKLSKRGITAEVFHGDKAQGARTRVLDGFKNGEISVLI 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V NFD+P    +Y+HRIGR+GRAG  G A TL++ ED  H   I
Sbjct: 309 ATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGVI 368

Query: 361 EK 362
           EK
Sbjct: 369 EK 370


>gi|323499192|ref|ZP_08104170.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
 gi|323315825|gb|EGA68858.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
          Length = 418

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 153/369 (41%), Positives = 220/369 (59%), Gaps = 18/369 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADLGL P +V  +    Y +PTPIQ  TIP VL   D+ G A TG+GKTA+F LP+L  
Sbjct: 10  FADLGLIPTLVERLEALEYRQPTPIQSHTIPDVLDGKDIVGGANTGSGKTAAFSLPILQK 69

Query: 62  ILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNL-----TVALLIGGIPFEA 114
           ILE+  +  R      LIL PTRELA+QVA N + Y  +Y+L     TVA+  GG+    
Sbjct: 70  ILEQEESNRRGNYVSHLILVPTRELASQVAYNVKSY--SYHLRDKIKTVAVF-GGVSVNP 126

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  G+D+++ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  I  L+
Sbjct: 127 QMLALRGGSDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILELL 186

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKCA 233
           P  +QTLLFSAT  D++  ++++ L +P  +EV   S+ A T ++  F     Q   K A
Sbjct: 187 PKKKQTLLFSATFPDKVTTLAQHLLNDP--VEVQLQSAEASTLVQRVFSVNKGQ---KTA 241

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +L  L++ Q   +  +IF N K    +L   L K+G +    HG+  Q +R ++L  FK 
Sbjct: 242 VLAHLIK-QHKWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKS 300

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G IQ+++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G   +L+  +D
Sbjct: 301 GEIQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDD 360

Query: 354 IKHIDAIEK 362
             H   IEK
Sbjct: 361 FHHFKVIEK 369


>gi|269104326|ref|ZP_06157022.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268160966|gb|EEZ39463.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 394

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 141/341 (41%), Positives = 206/341 (60%), Gaps = 9/341 (2%)

Query: 34  LVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG-RARVRMPRTLILEPTRELAAQVADNF 92
           ++L   DV   AQTGTGKTASFVLPML     G + R +  R LIL PTREL AQVA+N 
Sbjct: 1   MILLGKDVLAAAQTGTGKTASFVLPMLERFNDGVKVRPKRVRGLILAPTRELVAQVAENI 60

Query: 93  EKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVI 152
           EKY K+ N+    + GG+ ++ Q + L  G D+L+ TPGR+LD   +  + ++ +E +V+
Sbjct: 61  EKYSKHLNIKTLAMFGGVEYKHQKQALIEGVDILVATPGRLLDMCTQRAIHLDEVETVVL 120

Query: 153 DEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRI-EVNTPS 211
           DEADRMLDMGFI  I  +   +P   Q LLFSATMT ++++++   ++NP  + E++  +
Sbjct: 121 DEADRMLDMGFIEAINKVMDRLPLDCQQLLFSATMTRQVRELARTAIENPIELSEISKGN 180

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
           + A  IE   V        K +LL  +++  D     +IF   K     L   L K+   
Sbjct: 181 AAASKIEQWLVTV--DKDMKSSLLSHMIKEND-WDQALIFIETKHGAAKLVEQLAKRDIY 237

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
             A H    Q  R ++L +FK G ++LMVA+ +AARG+DI ++  V N+D+P  AE YIH
Sbjct: 238 AEAFHSGRSQAVRSQLLEDFKSGQLKLMVATGVAARGIDIDNLKRVINYDLPYPAEEYIH 297

Query: 332 RIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK----LIEKKV 368
           RIGRTGRAG  G+A + V+K++ K++  IE     L+E++V
Sbjct: 298 RIGRTGRAGASGEAISFVSKDNFKNLCMIESRLGHLLERRV 338


>gi|117918867|ref|YP_868059.1| ATP-dependent RNA helicase RhlB [Shewanella sp. ANA-3]
 gi|189040046|sp|A0KS84|RHLB_SHESA RecName: Full=ATP-dependent RNA helicase rhlB
 gi|117611199|gb|ABK46653.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 439

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 147/392 (37%), Positives = 235/392 (59%), Gaps = 15/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FADL L P+V  A+ + G+   TPIQ  ++P++LQ  D+ G AQTGTGKT +F++     
Sbjct: 11  FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L+       ++  PR +I+ PTRELA Q+A +     K+ +L V ++ GG  ++ Q K 
Sbjct: 71  LLSTPVPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKHSHLKVGIVYGGESYDVQRKT 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G D+LI T GRI+D+  +G + +  I+ +V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LDQGVDILIGTTGRIIDYVRQGIINLGGIQAVVLDEADRMFDLGFIKDIRFLFRRMPSAD 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++ ++Q+++ + +  P ++E+     T++ I E  F   Y     K  LL
Sbjct: 191 QRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIF---YPSQEDKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++ +D  +  I+F N K +  NL   LE  G  V  + G++ Q+ R++IL  F +G 
Sbjct: 248 LTLIE-EDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQ 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG  G + +   +E   
Sbjct: 307 LDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYAL 366

Query: 356 HIDAIEKLIEKKVDWLNGD----LSSLNPPLE 383
           ++ AIE  I   +   N D    L  + PP++
Sbjct: 367 NLPAIETYINHSIPVSNYDRDALLEDIPPPVK 398


>gi|297379472|gb|ADI34359.1| ATP-dependent RNA helicase [Helicobacter pylori v225d]
          Length = 492

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 82  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +   + T   I   F        ++   + +LL +Q
Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRVSIMAFKKNDADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374

Query: 363 LIEKKVDWL 371
            I+ K++  
Sbjct: 375 EIDSKIELF 383


>gi|257783884|ref|YP_003179101.1| DEAD/DEAH box helicase domain-containing protein [Atopobium
           parvulum DSM 20469]
 gi|257472391|gb|ACV50510.1| DEAD/DEAH box helicase domain protein [Atopobium parvulum DSM
           20469]
          Length = 450

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 146/393 (37%), Positives = 218/393 (55%), Gaps = 35/393 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+LGL+ +++  V   G+  PTP+Q   IP VL   DV   AQTGTGKTA+F+LP L
Sbjct: 3   ITFAELGLNEQILAGVTTLGFSVPTPVQTAAIPAVLAGKDVVASAQTGTGKTAAFMLPTL 62

Query: 61  -------------------------TILEKGRARVR-----MPRTLILEPTRELAAQVAD 90
                                     + E+   R        PR LI+ PTRELAAQ+ +
Sbjct: 63  QRIAVEKHDKAEKPDGKRNAAAERNAVAERNAKRGTGKRNAYPRALIVTPTRELAAQIDN 122

Query: 91  NFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEIL 150
             +    +      ++ GG  ++ Q   L++G DVL+ TPGR++D  ++    + +I++L
Sbjct: 123 VAKSVCASTGQQAVIVTGGAHYKHQIAALQKGCDVLVATPGRLIDLLDKKHTSLEDIQVL 182

Query: 151 VIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           V+DEADRMLDMGF P +  I   +P   QTLLFSAT+   +    +  L++P+RIE+   
Sbjct: 183 VLDEADRMLDMGFWPSVHRIMEQLPKAHQTLLFSATLPASITSTIDALLKDPERIEIART 242

Query: 211 SSTAETIE-HCFVATYAQYSKKCALLQQLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQ 268
             TA TIE H    T  Q   K  LL+ L+ S D     + +FC  K  V ++  +L+  
Sbjct: 243 GQTAATIEQHLCSVTQGQ---KPQLLKALIDSFDPAPERVLVFCRTKSRVDSIYKNLKAA 299

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G  V  +H +  Q++R K L  F+  +IQ++VA+D+ +RG+DI  +  V NFDVP   E+
Sbjct: 300 GLKVDVMHADRPQKARAKALDRFRSASIQILVATDVMSRGIDIQGIDVVINFDVPLDPED 359

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           Y+HRIGRTGRAG  G+A+T +  +++  +  IE
Sbjct: 360 YVHRIGRTGRAGATGQAYTFMGPDEVTPLREIE 392


>gi|149713746|ref|XP_001501494.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1
           [Equus caballus]
          Length = 455

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 222/370 (60%), Gaps = 13/370 (3%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 26  FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQL 238
            LFSATMT ++QK+    L+NP +  V++   T E ++  + F+ +  + +    +L +L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 261

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +     + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +
Sbjct: 262 AGN-----SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++   
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376

Query: 359 AIEKLIEKKV 368
            IE LI KK+
Sbjct: 377 RIEHLIGKKL 386


>gi|114706869|ref|ZP_01439769.1| Superfamily II DNA and RNA helicase [Fulvimarina pelagi HTCC2506]
 gi|114537817|gb|EAU40941.1| Superfamily II DNA and RNA helicase [Fulvimarina pelagi HTCC2506]
          Length = 457

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 142/363 (39%), Positives = 205/363 (56%), Gaps = 5/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+  +  A+       PTPIQ + IP  L   D+ GIAQTGTGKTA+F LP+L  
Sbjct: 6   FDGFGLAEPLTRALARLELTTPTPIQERAIPHALAGRDMLGIAQTGTGKTAAFALPLLHH 65

Query: 63  LEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L    G+   R  + LIL PTRELA Q+A++     +   ++  ++ GG+    Q + L 
Sbjct: 66  LMTVGGKPTTRTTKALILSPTRELAVQIAESIADLSEGTPISHCVVFGGVSVRPQIQALA 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+LD   +  + +     L++DEADRMLDMGF+  +  I    P  RQ+
Sbjct: 126 RGVDILVATPGRLLDLMEQRAIDLRETRHLILDEADRMLDMGFVRDVMKIVGKCPDDRQS 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSATM   ++ +S+  L NP+++ V     T E I    V +  Q +KK  L+   + 
Sbjct: 186 MMFSATMPKPIEDLSKKILTNPQKVSVTPAVVTVEKIAQS-VFSVPQRAKKHWLI-DFVS 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             DT +  ++F   K     L   L+K G    AIHGN  Q +R K L  F++G I ++V
Sbjct: 244 KNDTGRI-VVFTRTKHGANRLTSDLDKAGIQALAIHGNKSQTARQKALGAFQDGEIDVLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+ + D+ HV NFD+P   E+Y+HRIGRT RAGR G+A  LV   +   +  I
Sbjct: 303 ATDIVARGIHVDDISHVVNFDLPEEPESYVHRIGRTARAGRSGQAIALVDPSERAKLKQI 362

Query: 361 EKL 363
            KL
Sbjct: 363 IKL 365


>gi|209515859|ref|ZP_03264721.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209503707|gb|EEA03701.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 467

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 147/392 (37%), Positives = 219/392 (55%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L P  +  +   GY++ TPIQ  ++P+ L   D+   A+TG+GKTA+F L +L  
Sbjct: 11  FSELPLPPATLANLTQLGYIEMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLAR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+   AR    + ++L PTRELA QV     +  +   N+ V  L GG P   Q   LE 
Sbjct: 71  LD---ARKFDTQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH  RG L++  +  LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 128 GAHVVVGTPGRIMDHLERGTLVLQALNTLVLDEADRMLDMGFFDDIAKVARQCPKERQTL 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K+S+ FL+NPK +++      ++  +  +  +  +      LL    + 
Sbjct: 188 LFSATYPEGIAKLSQQFLRNPKEVKLAERHDDSKIRQRFYEVSEDERLHAVGLLLNHYRP 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 248 VST----IAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E + HRIGRTGRA + G A +L + +++  +  IE
Sbjct: 304 TDVAARGLDIAQLEAVINVDVTPDPEVHTHRIGRTGRADQEGWALSLASMDEMGRVGGIE 363

Query: 362 KLIEKKVDWLN-GDLSS-----LNPPLEKIDI 387
           +  ++ V+W    +L +     L PP+E + I
Sbjct: 364 QAHKRDVEWHKLAELKAASNDPLLPPMETLQI 395


>gi|315586245|gb|ADU40626.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 35A]
          Length = 492

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 213/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 82  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +   + T   I   F         K  +  +LL +Q
Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAKAIM--RLLDTQ 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374

Query: 363 LIEKKVDWL 371
            I+ +++  
Sbjct: 375 EIDSEIELF 383


>gi|326316425|ref|YP_004234097.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323373261|gb|ADX45530.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 461

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 151/424 (35%), Positives = 230/424 (54%), Gaps = 15/424 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF----V 56
           M FA LGLSP +V A    G+  PTPIQ++ IP VL   DV G AQTG+GKTA+F    +
Sbjct: 17  MPFAALGLSPALVHAAGALGFDTPTPIQVQAIPAVLDGRDVLGRAQTGSGKTAAFGLPLL 76

Query: 57  LPMLTILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNY---NLTVALLIGGIP 111
             +L   ++  AR   R PR L+L PTRELAAQV +   +   +     L +A+  GG+ 
Sbjct: 77  QRLLPQAQQAGARPGPRRPRALVLVPTRELAAQVGEVLRELAGHLPGPRLKIAIAFGGVS 136

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q   L  GAD ++ TPGR+LD      L ++ ++ LV+DEAD++LD+GF   +Q + 
Sbjct: 137 INPQLMALRGGADAVVATPGRLLDLVEHNALSLSQVQALVLDEADQLLDLGFAEELQRVL 196

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +L+P  RQ LLFSAT    + +++E  L++P RIE+     TA  I    +A   +  ++
Sbjct: 197 ALLPAQRQNLLFSATFEPGVARLAEGLLRDPLRIEIAEAPGTAPDIAQRAIAV--EGPRR 254

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL+QLL  +      ++F   +    ++   L + G      HG + Q +R ++L  F
Sbjct: 255 TQLLKQLLTQEPGWTRVLVFVATQYAAEHVAEKLYQSGIYASPFHGGLSQGTRRQVLQEF 314

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           ++   Q++V +DLAARG+DI  +  V N+D+P  A +Y+HRIGRTGRAG  G A + V  
Sbjct: 315 RDERWQVLVTTDLAARGIDIAGLPAVVNYDLPRAAADYVHRIGRTGRAGASGVAVSFVTP 374

Query: 352 EDIKHIDAIEK---LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           E   H   + +   L    V+ + G   +L P  ++    +   AR    +P  + G   
Sbjct: 375 EAAPHWQLLARRHGLQALPVEQVAGFEVALAPAAQEAGTQEDAPARPGK-LPPGTGGIKG 433

Query: 409 RKKN 412
           R+ +
Sbjct: 434 RRPS 437


>gi|255326979|ref|ZP_05368055.1| dead/deah box helicase [Rothia mucilaginosa ATCC 25296]
 gi|255296196|gb|EET75537.1| dead/deah box helicase [Rothia mucilaginosa ATCC 25296]
          Length = 565

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 139/371 (37%), Positives = 212/371 (57%), Gaps = 9/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD G+   +  A+   G   P PIQ  T+P+ L   D+ G A+TGTGKT  F LP +  
Sbjct: 16  FADFGVRQDISDALAAVGITSPFPIQELTLPVALSGQDIIGQAKTGTGKTLGFGLPTIQR 75

Query: 63  L----EKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    ++G A +     P+ LIL PTRELA QV ++     K  N  VA L GG+P E Q
Sbjct: 76  VVGRDDEGWADLEYPGAPQALILVPTRELAIQVGEDLAIAAKLRNARVATLYGGVPIEPQ 135

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L RG +V + TPGRI+D + +G L +  ++I+V+DEAD MLD+GF P ++ I S +P
Sbjct: 136 AELLRRGLEVAVGTPGRIIDLYQQGFLNLKQVKIVVLDEADEMLDLGFQPSVEKILSYLP 195

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCAL 234
             RQ++LFSATM   +  ++  ++  P RI    P   ++T        Y A +  K  +
Sbjct: 196 EDRQSMLFSATMPGPVIAMARQYMTKPMRISAADPEDASKTKASIRQVVYRAHHLDKDEM 255

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + ++L++    +  +IF   K++   +   L  +GF+   +HG+++Q +R + L  F+ G
Sbjct: 256 IGRILRATGRGRT-VIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRTG 314

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N  VP   + Y+HR GRTGRAG  G A TLV  +D+
Sbjct: 315 KVDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNEGTAVTLVDWDDL 374

Query: 355 KHIDAIEKLIE 365
                I   +E
Sbjct: 375 PRWKVINDALE 385


>gi|297735665|emb|CBI18352.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 140/373 (37%), Positives = 206/373 (55%), Gaps = 25/373 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  LSP+++ AV  AGY  P+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPMLT 
Sbjct: 212 WVESKLSPELLKAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTY 271

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + +            P  +++ PTRELA Q+ D   K+     + V  ++GG   E Q  
Sbjct: 272 ISRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGF 331

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           ++ +G +V+I TPGR++D   R   ++N    +V+DEADRM+DMGF P +  +   +P +
Sbjct: 332 RIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 391

Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
                            R T +FSATM   +++++  +L+NP  + + T     + I   
Sbjct: 392 NLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQH 451

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
            +      S+K   LQ+LL      K  I+F N KK+   L   L+K G+ V  +HG   
Sbjct: 452 VIMVKG--SEKMPKLQKLLDELGD-KTAIVFINTKKSTDTLAKGLDKAGYRVTTLHGGKS 508

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q  R   L  F+     ++VA+D+A RG+DIPDV HV N+D+P   E Y HRIGRTGRAG
Sbjct: 509 QEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAG 568

Query: 341 RHGKAFTLVAKED 353
           + G A T +   D
Sbjct: 569 KTGVATTFLTLHD 581


>gi|169794570|ref|YP_001712363.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AYE]
 gi|260557002|ref|ZP_05829219.1| DEAD/DEAH box helicase [Acinetobacter baumannii ATCC 19606]
 gi|169147497|emb|CAM85358.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AYE]
 gi|260409608|gb|EEX02909.1| DEAD/DEAH box helicase [Acinetobacter baumannii ATCC 19606]
          Length = 619

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 143/378 (37%), Positives = 228/378 (60%), Gaps = 15/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP L  
Sbjct: 9   FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 68

Query: 63  L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111
           L          E+ +A V  P  L+L PTRELA QV+ +   + ++   + +A ++GG+P
Sbjct: 69  LAGQDTFVPFKERMKA-VTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 127

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           F  Q ++L +GA V++ TPGR+LD  NR +L ++ ++ L++DEADRMLD+GF   ++ I+
Sbjct: 128 FGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 186

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            L     QTL+FSAT  D + +++E  +  P+RI + T  ST   I      T   +  K
Sbjct: 187 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDG-FEHK 245

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL   L + +T+   ++F + +++   L   L + G SV A+HG + Q  R + L + 
Sbjct: 246 KKLLTHWL-ADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 304

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL   
Sbjct: 305 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATY 364

Query: 352 EDIKHIDAIEKLIEKKVD 369
            +   I A+E  +E +++
Sbjct: 365 RERGKIRALEDYLEARLN 382


>gi|91791813|ref|YP_561464.1| ATP-dependent RNA helicase RhlB [Shewanella denitrificans OS217]
 gi|123166515|sp|Q12S35|RHLB_SHEDO RecName: Full=ATP-dependent RNA helicase rhlB
 gi|91713815|gb|ABE53741.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 432

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 229/373 (61%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FADL L  +V+ A+ + G+   TPIQ  ++P++L+  D+ G AQTGTGKT +F++     
Sbjct: 11  FADLPLHAEVIQALNENGFEFCTPIQALSLPVLLKAKDIAGQAQTGTGKTMAFLVATFNH 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT        +  PR +I+ PTRELA Q+A +     K+  L V ++ GG  +E Q + 
Sbjct: 71  LLTTPAPQARELNQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGESYEVQREV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176
           L++G D+LI T GRI+D+  +G + +N+I+ +V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LDKGVDILIGTTGRIIDYVRQGVISLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAS 190

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           +R  +LFSAT++ ++Q+++ + + +P+++EV     T++ I E  F   Y     K  LL
Sbjct: 191 SRLNMLFSATLSMKVQELAYDHMNDPEKVEVTPEEKTSKNIKEEIF---YPSTEDKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++ +D  +  I+F N K +  NL   LE  G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 LTLME-EDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG  G + +   +    
Sbjct: 307 LDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACETYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE+ I   V
Sbjct: 367 NLPAIEQYIGHSV 379


>gi|322799058|gb|EFZ20513.1| hypothetical protein SINV_09810 [Solenopsis invicta]
          Length = 710

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 139/359 (38%), Positives = 216/359 (60%), Gaps = 14/359 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F   GL   ++  +  +GY KPTP+Q   IP+++   DV   AQTG+GKTA+FVLP+L +
Sbjct: 272 FDQSGLRSILLENIKKSGYTKPTPVQKYAIPIIMSGRDVMACAQTGSGKTAAFVLPILHS 331

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +LE  R  V+      P  +I+ PTREL +Q+   F+K+  N  + V ++ GG     Q 
Sbjct: 332 LLENQRDLVKTGSSCEPHAIIISPTRELTSQIYTQFKKFSLNSIIRVEVIYGGTSISHQT 391

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI----TS 172
            K+  G  VL+ TPGR+LD   RGK++++++   V+DEADRMLDMGF+P I+ I    T 
Sbjct: 392 NKVFNGCHVLVATPGRLLDFIGRGKVVLSSLRFFVLDEADRMLDMGFLPDIEKILDHETM 451

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           +    RQ L+FSAT  +++Q+++  FL+N   + V         +E  F     Q  K+ 
Sbjct: 452 VAAEERQMLMFSATFPNDIQELAGRFLRNYLFLAVGIVGGACADVEQIFYQASGQPDKR- 510

Query: 233 ALLQQLLQSQD---TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            LL++L++ Q+   +++  ++F  QK++   +   L +  +   +IHG+  QR R + LS
Sbjct: 511 KLLKELIEKQNQLGSIEGTLVFVAQKRHTDFIAAFLSENNYPTTSIHGDRLQREREEALS 570

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +FK+G + ++VA+ +AARGLDI +V HV NFD+P   + Y+HRIGRTGR G  GKA + 
Sbjct: 571 DFKKGKMSILVATAVAARGLDIKNVSHVINFDLPQTIDEYVHRIGRTGRVGNRGKATSF 629


>gi|126643119|ref|YP_001086103.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii ATCC
           17978]
 gi|213158859|ref|YP_002320857.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057]
 gi|126389003|gb|ABO13501.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii ATCC
           17978]
 gi|213058019|gb|ACJ42921.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057]
          Length = 615

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 143/378 (37%), Positives = 228/378 (60%), Gaps = 15/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP L  
Sbjct: 5   FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 64

Query: 63  L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111
           L          E+ +A V  P  L+L PTRELA QV+ +   + ++   + +A ++GG+P
Sbjct: 65  LAGQDTFVPFKERMKA-VTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           F  Q ++L +GA V++ TPGR+LD  NR +L ++ ++ L++DEADRMLD+GF   ++ I+
Sbjct: 124 FGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 182

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            L     QTL+FSAT  D + +++E  +  P+RI + T  ST   I      T   +  K
Sbjct: 183 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDG-FEHK 241

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL   L + +T+   ++F + +++   L   L + G SV A+HG + Q  R + L + 
Sbjct: 242 KKLLTHWL-ADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 300

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL   
Sbjct: 301 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATY 360

Query: 352 EDIKHIDAIEKLIEKKVD 369
            +   I A+E  +E +++
Sbjct: 361 RERGKIRALEDYLEARLN 378


>gi|320335085|ref|YP_004171796.1| DEAD/DEAH box helicase domain-containing protein [Deinococcus
           maricopensis DSM 21211]
 gi|319756374|gb|ADV68131.1| DEAD/DEAH box helicase domain protein [Deinococcus maricopensis DSM
           21211]
          Length = 604

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 135/364 (37%), Positives = 215/364 (59%), Gaps = 11/364 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL ++P +   + + G ++ +PIQ +++P  +Q  D+ G A+TGTGKT +F +P++
Sbjct: 1   MQFTDL-IAPALAARLAERGILEASPIQAESLPHTMQGRDLIGRARTGTGKTLAFAIPVI 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             LE  R R R+PR LIL PTRELA QVA+ F+K       LTV    GG  +  Q K L
Sbjct: 60  DKLEPSRERGRLPRALILAPTRELAKQVAEEFKKSAPELLTLTV---YGGAAYGPQEKAL 116

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DV++ TPGR++DH  RG L ++ ++  ++DEAD ML +GF   I++I S  P TRQ
Sbjct: 117 YGGVDVIVGTPGRVIDHIERGNLKLDAVQFAILDEADEMLSVGFADAIESILSATPETRQ 176

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQ 237
           T+LFSAT+   + ++   +L++P  +++   S    A+T++H  V      ++  A    
Sbjct: 177 TMLFSATLPAGVTRIGNKYLKDPLVVDLVGESRMQAAQTVQHLKVKVGRTRTRVLADFLT 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +   +      I+F   K+ V  L   L  +G    A+HG++ Q  R + L +F+ G ++
Sbjct: 237 IYNPE----RAIVFTRTKREVDELAMELIHRGLEAEALHGDLAQSQRERALGSFRAGRVR 292

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIP++  V  + +P   E+Y+HR GRTGRAGR G A  +  + + + +
Sbjct: 293 VLVATDVAARGLDIPEIDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIVMYGEREGREL 352

Query: 358 DAIE 361
             +E
Sbjct: 353 RNLE 356


>gi|315643920|ref|ZP_07897090.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315280295|gb|EFU43584.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 559

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 146/378 (38%), Positives = 226/378 (59%), Gaps = 12/378 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LG+  + V  + + G   PTP+Q ++IPL++   DV   A+TGTGKT +F+LP+L 
Sbjct: 3   NFQQLGIDEQRVRKLKEQGITVPTPVQQESIPLLIDGKDVIARARTGTGKTLAFMLPILQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY--GKNYNLTVALLIGGIPFEAQNKKL 119
            ++  RA    P+ LI+ PTRELA Q+ +  +K   G+   + +  + GG   E Q +KL
Sbjct: 63  QIDPKRA---YPQALIIAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVEKQLRKL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G  ++I TPGR+LDH  RG L +  ++ LV+DEAD+ML MGF+  ++ +   +P+ RQ
Sbjct: 120 EGGRHLIIGTPGRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDDVEALIHALPYRRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQL 238
           T+LFSATM   +++++ N++  P  I +   S    E I+   V      SK+ AL   +
Sbjct: 180 TMLFSATMPAGVKQLAGNYMNQPVDIVIKGASPIPLEQIQQVVVEC-TDRSKQDALRTMI 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            Q    +   IIFC  K+    L  +L   G+    +HG++ Q  R  ++  F++  +QL
Sbjct: 239 EQYNPFLA--IIFCRTKRRASILNDALLAHGYQSDELHGDLSQAKREAVMKRFRDAKLQL 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  V HVFN+D+P+  E+YIHRIGRTGRAG +G A T  A +D+  + 
Sbjct: 297 LVATDVAARGLDVEGVTHVFNYDMPHDVESYIHRIGRTGRAGGNGMAITFAAGKDLNDLQ 356

Query: 359 AIEKLIE---KKVDWLNG 373
            IE+ I    K+V + +G
Sbjct: 357 RIEEGISLRLKRVRYDSG 374


>gi|254776598|ref|ZP_05218114.1| RhlE [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 505

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 145/374 (38%), Positives = 216/374 (57%), Gaps = 16/374 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+  ++V A+ + G      IQ  T+PL L   D+ G A+TG GKT +F +P+L  
Sbjct: 12  FAQLGVRDEIVRALDEKGIQHSFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQR 71

Query: 63  LEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIPFE 113
           +  G   RA    PR L++ PTREL  QV D+     K+        L+V  + GG P+E
Sbjct: 72  ITAGTAPRALNGTPRALVVVPTRELCLQVTDDLTLAAKHLTADGGRPLSVVPIYGGRPYE 131

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+ I   
Sbjct: 132 PQIDALRAGADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQ 191

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE---TIEHCFVATYAQYSK 230
           +P  RQ++LFSATM D +  ++  F+  P  I    P S A    T+++ +    A    
Sbjct: 192 IPDDRQSMLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQYVY---RAHALD 248

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K  L+ ++LQ++      +IF   K+    +   L ++GF V A+HG++ Q +R K L  
Sbjct: 249 KVELVSRVLQAESRGAT-MIFTRTKRTAQKVADELAERGFKVGAVHGDLGQVAREKALKA 307

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I ++VA+D+AARG+DI DV HV N+ +P   + Y+HRIGRTGRAG+ G A TLV 
Sbjct: 308 FRTGDIDVLVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKAGVAVTLVD 367

Query: 351 KEDIKHIDAIEKLI 364
            +++     I+K +
Sbjct: 368 WDELARWALIDKAL 381


>gi|213965889|ref|ZP_03394080.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
 gi|213951467|gb|EEB62858.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
          Length = 454

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 137/368 (37%), Positives = 217/368 (58%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG++ ++  A+ D G  +   IQ  T+PL L   D+ G A+TG GKT  F +P++  
Sbjct: 9   FVELGVAAEICDALADEGITRTFAIQELTLPLALDGTDIIGQARTGMGKTLGFGVPLIDR 68

Query: 63  LEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +    AR+  P    R +I+ PTREL  QV ++  +   + NL V  + GG P+E Q ++
Sbjct: 69  VFDD-ARIPEPDGTARAIIIVPTRELCVQVGEDLARAAHSTNLRVCTIYGGRPYEEQIEQ 127

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RG D+++ TPGR++D + R  L ++ ++ILV+DEAD MLD+GF+P I+ I + VP  R
Sbjct: 128 LDRGVDIIVGTPGRLIDLYQRNNLELSGVKILVLDEADEMLDLGFLPDIEKILAAVPDER 187

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCALLQQ 237
           QT+LFSATM   +  ++  F+  P  I   +    A   E      +  +   K +++ +
Sbjct: 188 QTMLFSATMPGPILTLARTFMNRPVHIRAESGEEEATVHETTKQIVFQSHQMDKVSVIAR 247

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +LQ+    +  IIF   K+   ++   L ++GF V A+HG++ Q +R + L+ F+ G + 
Sbjct: 248 ILQANGRGRT-IIFARTKRGAASVAEQLGERGFLVTAVHGDMGQPARERSLTAFRNGDVD 306

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI DV HV N  VP+    Y+HRIGRTGRAG  G A TLV  ++    
Sbjct: 307 VLVATDVAARGIDIDDVTHVINHQVPDDEMTYVHRIGRTGRAGHSGVAVTLVGWDETTKW 366

Query: 358 DAIEKLIE 365
            AI   ++
Sbjct: 367 KAISDALD 374


>gi|120402790|ref|YP_952619.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955608|gb|ABM12613.1| DEAD/DEAH box helicase domain protein [Mycobacterium vanbaalenii
           PYR-1]
          Length = 494

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 142/370 (38%), Positives = 215/370 (58%), Gaps = 9/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA LG+  ++V A+ + G      IQ  T+PL L   D+ G A+TG GKT +F +P+L  
Sbjct: 12  FAQLGVRDEIVRALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLHR 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNF---EKY---GKNYNLTVALLIGGIPFEA 114
              +  R    +PR LI+ PTREL  QV ++     KY    +   LTV  + GG P+E 
Sbjct: 72  ITTDTERPLTGIPRALIVVPTRELCIQVYEDLVGASKYLMADETRKLTVTAIYGGRPYEP 131

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L++G DV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+ I   +
Sbjct: 132 QIEALQKGVDVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILKQI 191

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ +LFSATM D +  ++  F+  P  I    P S+A        A  A    K  +
Sbjct: 192 PAKRQAMLFSATMPDPIITLARTFMTQPTHIRAEAPHSSATHDSTEQFAYRAHALDKVEM 251

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + ++LQ++      +IF   K+    +   L ++GF V A+HG++ Q +R K L +F+ G
Sbjct: 252 VARILQAEGRGAT-MIFTRTKRTAQKVADELGERGFKVGAVHGDLGQAAREKALKSFRTG 310

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+DI D+ HV NF +P   + Y+HRIGRTGRAG+ G A TLV  +++
Sbjct: 311 EVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTLVDWDEL 370

Query: 355 KHIDAIEKLI 364
                I+K +
Sbjct: 371 PRWSMIDKAL 380


>gi|73997167|ref|XP_534885.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
           isoform 1 isoform 1 [Canis familiaris]
          Length = 456

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 222/370 (60%), Gaps = 13/370 (3%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 26  FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQL 238
            LFSATMT ++QK+    L+NP +  V++   T E ++  + F+ +  + +    +L +L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 261

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +     + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +
Sbjct: 262 AGN-----SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++   
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376

Query: 359 AIEKLIEKKV 368
            IE LI KK+
Sbjct: 377 RIEHLIGKKL 386


>gi|114052016|ref|NP_001039850.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus]
 gi|109825481|sp|Q29S22|DDX47_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
           Full=DEAD box protein 47
 gi|88758683|gb|AAI13208.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Bos taurus]
 gi|296487253|gb|DAA29366.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus]
          Length = 457

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 222/370 (60%), Gaps = 13/370 (3%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 28  FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 87  ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 143

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 144 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 203

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQL 238
            LFSATMT ++QK+    L+NP +  V++   T E ++  + F+ +  + +    +L +L
Sbjct: 204 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 263

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +     + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +
Sbjct: 264 AGN-----SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 318

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++   
Sbjct: 319 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 378

Query: 359 AIEKLIEKKV 368
            IE LI KK+
Sbjct: 379 RIEHLIGKKL 388


>gi|282879073|ref|ZP_06287833.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
           35310]
 gi|281298807|gb|EFA91216.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
           35310]
          Length = 644

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 140/377 (37%), Positives = 231/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+S ++  A+ + G+V P P+Q + IP +L  ++DV  +AQTGTGKTA++ LP+L 
Sbjct: 21  FEELGVSEEIRRAIEELGFVHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAYGLPLLQ 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++      +  + +IL PTREL  Q+AD+ + + K   NL V  + GG     Q   L+
Sbjct: 81  KID---VDSKHTQAIILSPTRELCLQIADDLKDFAKYIKNLHVEPVYGGASIVTQIHALK 137

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR++D  NRG   ++++  +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 138 HGAQIIVATPGRLIDLMNRGVAKLDHVNNVVLDEADEMLNMGFSESINTILAGVPDDRNT 197

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM++E++K+++ +L++ K I V + +  AE + H +    A+   K   L++++ 
Sbjct: 198 LLFSATMSNEIEKIAKTYLRDYKEIVVGSRNEGAENVNHIYYMVNAR--DKYLALKRIVD 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   IIFC  K     +   L K G++  A+HG++ Q+ R   +  F++   QL+V
Sbjct: 256 YYPRI-FAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHVTQLLV 314

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  ENY HR GRTGRAG+ G +  ++   +   + A+
Sbjct: 315 ATDVAARGLDVDDLTHVINYGMPDDTENYTHRSGRTGRAGKKGTSICIIHTRERSKVRAV 374

Query: 361 EKLIEKKVDWLNGDLSS 377
           EK+I K  ++++G L +
Sbjct: 375 EKIIGK--EFVDGTLPT 389


>gi|184159623|ref|YP_001847962.1| superfamily II DNA/RNA helicase [Acinetobacter baumannii ACICU]
 gi|332876108|ref|ZP_08443892.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6014059]
 gi|183211217|gb|ACC58615.1| Superfamily II DNA and RNA helicase [Acinetobacter baumannii ACICU]
 gi|332735726|gb|EGJ66769.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6014059]
          Length = 615

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 143/378 (37%), Positives = 228/378 (60%), Gaps = 15/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP L  
Sbjct: 5   FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 64

Query: 63  L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111
           L          E+ +A V  P  L+L PTRELA QV+ +   + ++   + +A ++GG+P
Sbjct: 65  LAGQDTFVPFKERMKA-VTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           F  Q ++L +GA V++ TPGR+LD  NR +L ++ ++ L++DEADRMLD+GF   ++ I+
Sbjct: 124 FGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 182

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            L     QTL+FSAT  D + +++E  +  P+RI + T  ST   I      T   +  K
Sbjct: 183 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDG-FEHK 241

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL   L + +T+   ++F + +++   L   L + G SV A+HG + Q  R + L + 
Sbjct: 242 KKLLTHWL-ADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 300

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL   
Sbjct: 301 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATY 360

Query: 352 EDIKHIDAIEKLIEKKVD 369
            +   I A+E  +E +++
Sbjct: 361 RERGKIRALEDYLEARLN 378


>gi|317127874|ref|YP_004094156.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315472822|gb|ADU29425.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 481

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 140/363 (38%), Positives = 219/363 (60%), Gaps = 8/363 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS ++  A+    Y KPT +Q + IPL + + D+   +QTG+GKTA+F +P   I
Sbjct: 6   FDEYQLSEEIHRAITLMKYEKPTEVQREVIPLAMNKEDLVVKSQTGSGKTAAFGIP---I 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLER 121
            E      R P+ LIL PTRELA QV ++    G+ + L  AL + G  PF  Q ++L++
Sbjct: 63  CEMMNWEERKPQALILTPTRELAVQVREDIANIGR-FKLIKALAVYGKEPFAKQKEELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+LDH  R  L ++ I+ L++DEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 RNHVVVGTPGRMLDHIERETLALDEIKYLILDEADEMLNMGFINDVEEIMKALPADRVTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +++ +   +++NP+ IE+ +   T  +IEH  +    +   K ALL+ +   
Sbjct: 182 VFSATLPKDVEDLCHKYMENPQHIEIASSGITTASIEHHLMEVNPK--GKLALLKDITVV 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++   + IIFCN K++V  +   LE+  +S   +HG ++Q  R  ++  FK G  + +VA
Sbjct: 240 ENP-DSCIIFCNTKEHVDTVFSELERANYSCEKLHGGLEQEDRFSVMDGFKRGNFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ +V  V N+DVP   E Y+HR GRTGR+G  G+A T V   D K++ AIE
Sbjct: 299 TDVAARGIDVDNVTLVINYDVPMEKEGYVHRTGRTGRSGNKGRAITFVTPNDGKYLKAIE 358

Query: 362 KLI 364
           K I
Sbjct: 359 KYI 361


>gi|161510959|ref|YP_089142.2| ATP-dependent RNA helicase SrmB [Mannheimia succiniciproducens
           MBEL55E]
          Length = 445

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 149/438 (34%), Positives = 232/438 (52%), Gaps = 19/438 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  LSP+++ A+   GY +PT IQ + IP  +   DV G A TGTGKTA+F+LP +  
Sbjct: 6   FEDFDLSPELLKALAQKGYARPTAIQSEAIPAAMDERDVLGSAPTGTGKTAAFLLPAIQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR L+L PTRELA QVA   E+  +   L++A + GG+ ++   +   +
Sbjct: 66  LLDYPRRKPGAPRVLVLTPTRELAMQVAQQAEELAQFTKLSIATITGGVAYQNHGEIFNK 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +          +EIL+ DEADRML MGF    + I++   + +QT 
Sbjct: 126 NQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKISAETRWRKQTF 185

Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  EL    +E  L +P +I+        + I   +    + Y  K  LL + + 
Sbjct: 186 LFSATLEGELLVDFAERILTDPVKIDAEPSRRERKKINQWYYHADS-YEHKVKLLARFIA 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   K GI+F  ++++V  L   L K+G     + G + Q  R   +   K G + L+V
Sbjct: 245 DEQVSK-GIVFVRRREDVRELSEILRKRGIRSTYLEGEMAQTQRNNAIDKLKNGIVTLLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K++  I
Sbjct: 304 ATDVAARGIDIEDISHVMNFDLPYNADTYLHRIGRTARAGKKGTAVSFVEGHDYKYLGKI 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           ++  E+               L K  I +    R   P   +     +++K Y  QK   
Sbjct: 364 KRYTEE---------------LLKPRIIEGLEPRTKAPKDGEIKTVSKKQKAYIRQKREE 408

Query: 421 PLKESEKISKLQQDIQEN 438
             K ++K +KL++   +N
Sbjct: 409 KRKTTQKKAKLRRQDTKN 426


>gi|146311795|ref|YP_001176869.1| ATP-dependent RNA helicase DbpA [Enterobacter sp. 638]
 gi|145318671|gb|ABP60818.1| ATP-dependent RNA helicase DbpA [Enterobacter sp. 638]
          Length = 457

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 140/355 (39%), Positives = 217/355 (61%), Gaps = 8/355 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY+  TP+Q   +P +L+  DV   A+TG+GKTA+F L +L  ++ G   +   ++L+L 
Sbjct: 22  GYLAMTPVQAAALPAILEGRDVRVQAKTGSGKTAAFGLGLLQQIDAG---LFQTQSLVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF AQ   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHPPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +G + ++ ++ LV+DEADRMLDMGF   I  +    P TRQTLLFSAT  + +  +S   
Sbjct: 139 KGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            QNP  IE+++  +   +IE  F  T  +   K  LLQ+LL SQ    + ++FCN KK+ 
Sbjct: 199 QQNPATIEIDSVDAL-PSIEQQFYETSQK--GKIPLLQKLL-SQHQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +LE+ G S  A+HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QAVCEALEEAGQSALALHGDLEQRDRDQTLIRFANGSARVLVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
           NF++    E ++HRIGRT RAG  G A +L A E+ +  + + ++++ K++W++ 
Sbjct: 315 NFELAWDPEVHVHRIGRTARAGNSGLAISLCAPEEAQRANILSEMLQLKLNWMSA 369


>gi|317012091|gb|ADU82699.1| ATP-dependent RNA helicase [Helicobacter pylori Lithuania75]
          Length = 491

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 82  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +   + T   I   F        ++   + +LL +Q
Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374

Query: 363 LIEKKVDWL 371
            I+ +++  
Sbjct: 375 EIDSEIELF 383


>gi|224064557|ref|XP_002301515.1| predicted protein [Populus trichocarpa]
 gi|222843241|gb|EEE80788.1| predicted protein [Populus trichocarpa]
          Length = 807

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 139/356 (39%), Positives = 219/356 (61%), Gaps = 4/356 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D G SP+++ A+   GY KPTPIQ + +P+VL   D+ G+A+TG+GKTA+FVLPM+  
Sbjct: 227 FEDCGFSPQLMNAIAKQGYEKPTPIQCQALPIVLSGSDIIGMAKTGSGKTAAFVLPMIVH 286

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++    +   P  ++  PTRELA Q+    +K+ K++ + V+ + GG+    Q K+L+
Sbjct: 287 IMDQPELEKEEGPIGVVCAPTRELAHQIYLETKKFSKSHGIRVSAVYGGMSKLDQFKELK 346

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G +++I TPGR++D      L M+    LV+DEADRM D+GF P I++I   +   RQT
Sbjct: 347 AGCEIVIATPGRLIDMLKMKALNMSRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  +++K++   L +P R+ V       E I        +   K   L+++L  
Sbjct: 407 LLFSATMPRKIEKLAREILTDPVRVTVGEVGRANEDITQVVQVIPSDAEKLPWLIEKLPG 466

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D   + ++F ++K  V ++   L ++ F V A+HG+ DQ SRM+IL  FK G   ++V
Sbjct: 467 MIDE-GDVLVFASKKATVDDIESQLAQKAFKVAALHGDKDQASRMEILQKFKSGVYHVLV 525

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIK 355
           A+D+AARGLDI  +  V NFD+    + ++HRIGRTGRAG + G A+TL+ +++ +
Sbjct: 526 ATDVAARGLDIKSIKSVVNFDIAREMDVHVHRIGRTGRAGDKDGIAYTLITQKEAR 581


>gi|117646246|emb|CAL38590.1| hypothetical protein [synthetic construct]
 gi|208967637|dbj|BAG72464.1| apolipoprotein L domain containing 1 [synthetic construct]
          Length = 455

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 221/368 (60%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT IQI+ IPL LQ  D+ G+A+TG GKT +F LP+L 
Sbjct: 26  FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGPGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++  ++   +++  K   L  +L 
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDTYLVYIL- 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378

Query: 361 EKLIEKKV 368
           E LI KK+
Sbjct: 379 EHLIGKKL 386


>gi|115375095|ref|ZP_01462364.1| superfamily II DNA and RNA helicase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310825404|ref|YP_003957762.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|115367933|gb|EAU66899.1| superfamily II DNA and RNA helicase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309398476|gb|ADO75935.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
          Length = 421

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 149/412 (36%), Positives = 229/412 (55%), Gaps = 11/412 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLSP  + A+  A + +PTPIQ + IP  L   DV G A TGTGKTA++VLP++  
Sbjct: 5   FAQLGLSPTSLDALGRARFTQPTPIQARAIPPALAGKDVVGCAATGTGKTAAYVLPLVER 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               +  +     L+L PTREL  Q+++    + + + LT  +++GG    AQ + L+  
Sbjct: 65  FSGRKGLL----GLVLAPTRELVQQISEPVRLFAEPHGLTHTVVVGGEDMAAQVEALKER 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
              L+ TPGR++D      +    +E LV+DEADRMLDMGF   I+ I   +P  RQTLL
Sbjct: 121 PTFLLATPGRLVDLMASQAVTFPQLEALVLDEADRMLDMGFQFQIETILKALPRRRQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  ++ + + + L  P R+EV    + AE  E    +  A+  +K ALL  L++  
Sbjct: 181 FSATLGPDVTRFARDRLYQPVRVEVTRSGTPAERAEQRLYSVKAE--EKSALLLTLMRKN 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     +IF   K+    +  +L++ G+    +H +  Q  R + L  F++GT + +VA+
Sbjct: 239 E--GTALIFTRTKERADKVHKALQRAGYPCDVLHADRTQSQRKQALDAFRQGTCRCLVAT 296

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+ DVGHV N+D+P+  E+Y+HRIGRT RA   G A T    +D   +  IE 
Sbjct: 297 DIAARGLDVEDVGHVINYDLPHAPEDYVHRIGRTARAQASGVATTFATPKDAPTLARIES 356

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           ++  KV  L         P+ + +  +H  A+K+   PQK  G  +R  + +
Sbjct: 357 IMRTKVPRLP---VPREDPVFQEEWQRHLAAQKDPGPPQKDHGVSKRTPDQA 405


>gi|66550432|ref|XP_395653.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
           [Apis mellifera]
          Length = 452

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 139/369 (37%), Positives = 221/369 (59%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLG+   +  A  D  +  PT IQ + IPL L+  D+ G+A+TG+GKTA+F LP+L
Sbjct: 18  ITWKDLGIVDVLCKACEDLKWKSPTKIQYEAIPLALEGKDIIGLAETGSGKTAAFALPIL 77

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      LIL PTRELA Q+++ FE  G +  +  A+++GG+   +Q   L 
Sbjct: 78  QALLENPQRYF---ALILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALILA 134

Query: 121 RGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   +LI TPGR++DH    K   + +++ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 135 KKPHILIATPGRLVDHLENTKGFSLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERK 194

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATMT ++QK+    L+NP ++EV+T   T E ++  ++    ++  K   L  +L
Sbjct: 195 TLLFSATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKF--KDVYLVHIL 252

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + +IFC    N V     L   GF+   +HG + Q  R+  L+ FK     ++
Sbjct: 253 -NELAGNSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSIL 311

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR G++ T V + D++    
Sbjct: 312 ISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQR 371

Query: 360 IEKLIEKKV 368
           IE+LI K++
Sbjct: 372 IEQLISKQL 380


>gi|255036621|ref|YP_003087242.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254949377|gb|ACT94077.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 385

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 143/372 (38%), Positives = 225/372 (60%), Gaps = 7/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  ++  + +  Y +P PIQ   IP +L+ +DV GIA+TG+GKTASFVLP+L  
Sbjct: 8   FQSLGLSEPLLKTIAEQNYTQPYPIQQAAIPAILKGNDVLGIAKTGSGKTASFVLPILES 67

Query: 63  LEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKL 119
            +K   A+ R    L+L PTRELA Q+   F+ + +     V  L   GG+    Q   L
Sbjct: 68  FQKMPPAKNRHITALVLVPTRELAVQIGSVFQIFSERLPRKVKTLAVFGGVSINPQMIAL 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++L+ TPGR+L+  +   L +    ILV+DEAD+ML+MGF   +++I  L+P  RQ
Sbjct: 128 Q-NVEILVATPGRLLELLSYKALSLAETRILVLDEADKMLNMGFADEMRDIFFLLPKKRQ 186

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           ++LFSAT+ DE+ K++++ L++P RIE+       + I+      +    +K  LL+ L+
Sbjct: 187 SILFSATLGDEVDKINKDQLKSPVRIEIEEEEQNLDLIKQT--GYFVDPDRKGPLLRYLI 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +SQ  MK  ++F +  +   NL   L+K G    A+H    Q +R + L+ FK G + ++
Sbjct: 245 KSQQ-MKQVLVFVSATRTADNLVEKLKKNGIDAMAMHSKKSQGARTEALNKFKSGKLTVL 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLA+RG+DI  + +V NF++P   ++Y+HRIGRTGRA   G+A +L+  ED+ H   
Sbjct: 304 VATDLASRGIDIQFLPYVINFELPRSPKDYVHRIGRTGRAENPGEAISLICPEDVHHFKI 363

Query: 360 IEKLIEKKVDWL 371
           I+K + KKV+ +
Sbjct: 364 IQKKMGKKVEMM 375


>gi|255530578|ref|YP_003090950.1| DEAD/DEAH box helicase domain-containing protein [Pedobacter
           heparinus DSM 2366]
 gi|255343562|gb|ACU02888.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 625

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 136/367 (37%), Positives = 230/367 (62%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F+ LG+S  VV AV D G+  PTPIQ ++IP++L+  +D  G+AQTGTGKTA+F LP+L 
Sbjct: 5   FSKLGISDDVVNAVKDLGFENPTPIQEQSIPVLLEGNNDFVGLAQTGTGKTAAFGLPLLE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
           +++    +   P+ LIL PTREL  Q+  + + + KN +   V  + GG     Q +++ 
Sbjct: 65  LID---FKSNKPQALILCPTRELCLQITSDIKNFSKNTSGANVVAVYGGANIMQQLREIR 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGR+LD   R  +   N++ +V+DEAD ML+MGF   I +I S  P  ++T
Sbjct: 122 NGVQIVVATPGRMLDIIGRKAIDFTNVKYVVLDEADEMLNMGFQEDINDILSTTPDDKKT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E++++++N++ +P  + + T ++    IEH +    A+   K A L++++ 
Sbjct: 182 WLFSATMPPEVRRIAKNYMDSPVELTMGTKNTGNVNIEHEYYIVRAR--DKYAALKRIVD 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   ++FC  K +  ++   L K G++  A+HG++ Q+ R K++  F++  +QL++
Sbjct: 240 FNPEIF-AVVFCKTKLDTQDVAEHLIKDGYNADALHGDLSQQQRDKVMQRFRDRNMQLLI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ +V HV N+ +P+  E+Y HR GRTGRAG+ G +  +V  ++I  I  I
Sbjct: 299 ATDVAARGIDVNNVTHVINYSLPDEIESYTHRSGRTGRAGKTGISICIVNSKEIGKIRQI 358

Query: 361 EKLIEKK 367
           E++I K+
Sbjct: 359 ERIIGKQ 365


>gi|283798617|ref|ZP_06347770.1| ATP-dependent RNA helicase [Clostridium sp. M62/1]
 gi|291073603|gb|EFE10967.1| ATP-dependent RNA helicase [Clostridium sp. M62/1]
 gi|295115719|emb|CBL36566.1| Superfamily II DNA and RNA helicases [butyrate-producing bacterium
           SM4/1]
          Length = 553

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 139/369 (37%), Positives = 220/369 (59%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L  K++ AV D G+   +PIQ K IPL L+  D+ G AQTGTGKTA+F +P+L  
Sbjct: 6   FEELNLDAKILRAVTDMGFEAASPIQAKAIPLELEGKDIIGQAQTGTGKTAAFGIPLL-- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
            EK   + +  + ++L PTRELA QVA+      K  + + V  + GG     Q + L+ 
Sbjct: 64  -EKIDPKNKKLQAVVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSLKD 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+I TPGR++DH  R  +    +  +V+DEAD ML+MGF+  ++ I S +P  RQT+
Sbjct: 123 GVQVIIGTPGRVMDHMRRKTIKFGQVHTVVLDEADEMLNMGFLEDMETILSELPEERQTV 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           +FSATM   + ++++ F ++P+ ++V     T   +   +  V    +    C LL    
Sbjct: 183 MFSATMPQAIAEIAKKFQKDPEIVKVVKKDLTVPKVTQYYYDVKPKNKLEVMCRLLDMY- 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  ++FCN KK V  L  +L+ +G+    +HG++ Q  R ++++ F++G   ++
Sbjct: 242 ----APKLSVVFCNTKKQVDELVLALQGRGYFAEGLHGDLKQVQRDRVMNGFRKGRTDIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR GKAF+LV  +++  +  
Sbjct: 298 VATDVAARGIDVDDVEAVFNYDIPQDEEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRD 357

Query: 360 IEKLIEKKV 368
           I++  + K+
Sbjct: 358 IQRYCKTKI 366


>gi|295090645|emb|CBK76752.1| Superfamily II DNA and RNA helicases [Clostridium cf.
           saccharolyticum K10]
          Length = 553

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 139/369 (37%), Positives = 220/369 (59%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L  K++ AV D G+   +PIQ K IPL L+  D+ G AQTGTGKTA+F +P+L  
Sbjct: 6   FEELNLDAKILRAVTDMGFEAASPIQAKAIPLELEGKDIIGQAQTGTGKTAAFGIPLL-- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
            EK   + +  + ++L PTRELA QVA+      K  + + V  + GG     Q + L+ 
Sbjct: 64  -EKIDPKNKKLQAVVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSLKD 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+I TPGR++DH  R  +    +  +V+DEAD ML+MGF+  ++ I S +P  RQT+
Sbjct: 123 GVQVIIGTPGRVMDHMRRKTIKFGQVHTVVLDEADEMLNMGFLEDMETILSELPEERQTV 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           +FSATM   + ++++ F ++P+ ++V     T   +   +  V    +    C LL    
Sbjct: 183 MFSATMPQAIAEIAKKFQKDPEIVKVVKKDLTVPKVTQYYYDVKPKNKLEVMCRLLDMY- 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  ++FCN KK V  L  +L+ +G+    +HG++ Q  R ++++ F++G   ++
Sbjct: 242 ----APKLSVVFCNTKKQVDELVLALQGRGYFAEGLHGDLKQVQRDRVMNGFRKGRTDIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR GKAF+LV  +++  +  
Sbjct: 298 VATDVAARGIDVDDVEAVFNYDIPQDEEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRD 357

Query: 360 IEKLIEKKV 368
           I++  + K+
Sbjct: 358 IQRYCKTKI 366


>gi|302344868|ref|YP_003813221.1| putative ATP-dependent RNA helicase DeaD [Prevotella melaninogenica
           ATCC 25845]
 gi|302149937|gb|ADK96199.1| putative ATP-dependent RNA helicase DeaD [Prevotella melaninogenica
           ATCC 25845]
          Length = 640

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 138/377 (36%), Positives = 230/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+S ++  A+ + G+  P P+Q + IP +L  R+DV  +AQTGTGKTA+F LP+L 
Sbjct: 4   FEELGVSEEIRRAISELGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++      +  + ++L PTREL  Q+AD+ +++ K   +L +A + GG   + Q ++L 
Sbjct: 64  RID---TSSKETQAIVLSPTRELCLQIADDLKEFSKYIPHLHIAAVYGGASIDTQIRQLR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGR++D  +RGK  ++ +  +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 HGVQIIVATPGRLIDLMHRGKARLDKVRNVVLDEADEMLNMGFQESITEILTGVPEDRNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+++V++ +L + K I V + +  AE++ H +    A+   K   L++L+ 
Sbjct: 181 LLFSATMSREVERVAKGYLHDYKEIVVGSRNEGAESVNHIYYMVNAR--DKYLALKRLVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   I+FC  K     +   L K G++  A+HG++ Q+ R   +  F+    Q++V
Sbjct: 239 FYPKI-YAIVFCRTKVETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHLTQILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  ENY HR GRTGRAG+ G + +++   +   +  I
Sbjct: 298 ATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKYKVRNI 357

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ I K  D+++G L S
Sbjct: 358 EREISK--DFVDGTLPS 372


>gi|163748720|ref|ZP_02155973.1| ATP-dependent RNA helicase [Shewanella benthica KT99]
 gi|161331830|gb|EDQ02634.1| ATP-dependent RNA helicase [Shewanella benthica KT99]
          Length = 438

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 149/407 (36%), Positives = 243/407 (59%), Gaps = 17/407 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FAD  L   +  A+ ++G+   TPIQ  ++P++LQ+ D+ G AQTGTGKT +F++     
Sbjct: 11  FADFSLHEGIKTALNESGFEFCTPIQAASLPILLQKKDIAGQAQTGTGKTLAFLVATFEH 70

Query: 61  ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              + + +GR ++  PR +I+ PTRELA Q+A +     K+  L V ++ GG  +E Q K
Sbjct: 71  LLSSPIPEGR-QLNQPRAMIMAPTRELAIQIARDATLLAKHTGLKVGIVYGGESYEVQRK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+LI T GRI+D+  +G + ++ I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLDKGIDILIGTTGRIIDYVRQGIINLSAIQVVVLDEADRMFDLGFIKDIRFLFRRMPDA 189

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234
             R  +LFSAT++ ++Q+++ + +  P+++ +     T++ I E  F   Y    +K  L
Sbjct: 190 KLRLNMLFSATLSMKVQELAYDHMNEPEKVVIAPNEKTSKNIKEEIF---YPSMDEKMRL 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L++ +D  +  IIF N K +  N+   L   G  V  + G++ Q+ R++IL  F  G
Sbjct: 247 LLSLIE-EDWPEKAIIFSNTKHSCENVWSWLSGDGHRVGLLTGDVPQKKRIRILEQFTTG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            +  +VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGR G+ G + +   +E  
Sbjct: 306 ELDFLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRVGKKGVSISFACEEYA 365

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            ++ AIE+ I   +   N D ++L   LE I      H RK+N  PQ
Sbjct: 366 MNLPAIEEFIAHSIPVSNYDNTAL---LEDIPAPIRVH-RKHNSRPQ 408


>gi|169854086|ref|XP_001833720.1| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130]
 gi|116505187|gb|EAU88082.1| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130]
          Length = 455

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 149/379 (39%), Positives = 216/379 (56%), Gaps = 18/379 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   ++ A+   GY  PT IQ +++P  L+  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 21  FKSLGLIDPLLEALEQVGYKSPTEIQSESLPHALEGRDIIGVAETGSGKTAAFALPILQK 80

Query: 63  LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L +       P+ L   +L PTRELA Q++  FE  G       A+++GG+    Q   L
Sbjct: 81  LWEE------PKGLFACVLAPTRELAYQISQQFEALGAAMGARCAVIVGGMDLPTQAIAL 134

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   V++ TPGR+L H    K   +  ++ LV+DEADR+LDM F P I  I  L+P  R
Sbjct: 135 AKRPHVVVATPGRLLQHLEETKGFSLRTLKFLVLDEADRLLDMDFGPAIDKILKLIPKER 194

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            T LFSATMT ++ K+    L NP R+EV+    T  T+   ++        K  +L  L
Sbjct: 195 TTYLFSATMTSKVAKLQRASLVNPVRVEVSGKYQTVSTLLQHYL--LVPLKDKVVMLIYL 252

Query: 239 LQS--QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             S  Q+++   IIF    ++   L   L   GF    +HG + Q  R+  L  FK G  
Sbjct: 253 ANSLAQNSI---IIFTRTVRDARLLSIILRTLGFPAVPLHGQLSQSQRLGALGKFKSGGR 309

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR GKA TLV + D++ 
Sbjct: 310 KILVATDVASRGLDIPSVDVVINYDIPTHSKDYIHRVGRTARAGRAGKAITLVTQYDVEL 369

Query: 357 IDAIEKLIEKKVD-WLNGD 374
           +  IEK+I KK+D W   D
Sbjct: 370 LQRIEKVIGKKMDAWPTDD 388


>gi|192360552|ref|YP_001981465.1| ATP-dependent RNA helicase RhlB [Cellvibrio japonicus Ueda107]
 gi|190686717|gb|ACE84395.1| ATP-dependent RNA helicase RhlB [Cellvibrio japonicus Ueda107]
          Length = 439

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 141/374 (37%), Positives = 220/374 (58%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LSP+++ A+ D G+   +PIQ +++P  LQ  DV G AQTGTGKTA+F+  ++  
Sbjct: 22  FHDFDLSPELMHAIADVGFKYCSPIQAQSLPHALQGKDVVGKAQTGTGKTAAFLAAIIDD 81

Query: 63  LEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L K     +      R L++ PTREL  Q+A++ +   K  +L +  L+GG+ +  Q ++
Sbjct: 82  LLKNPITEKRYAGEARALVIAPTRELVIQIAEDAKALCKYTDLKIHTLVGGMDYTKQQRR 141

Query: 119 L-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           L E   D+L+ TPGR+LD      + ++ +E+LVIDEADRMLDMGFIP ++ I    P  
Sbjct: 142 LHETLVDILVATPGRLLDFCGNKDVYLDQLEVLVIDEADRMLDMGFIPQVRQIVRQTPHR 201

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCAL 234
             RQTL FSAT TD++  + + +   P  IE+   S + A   +H ++ +  +   K  L
Sbjct: 202 EDRQTLFFSATFTDDVHNLVQQWTYKPVTIEIEPESVANARVDQHVYLVSTEE---KYTL 258

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L+Q Q+  ++ I+F N++    +L   L + G     + G I Q  R+  L  FK G
Sbjct: 259 LYNLIQ-QEHAESMIVFANRRDECRDLYEKLLRHGIKAGLLSGEITQNKRVSTLDAFKNG 317

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+A RG+ I  + HV NF +P   E+Y+HRIGRTGRAG+ G + +   ++D 
Sbjct: 318 DIKVLVATDVAGRGIHISGISHVVNFTLPEEPEDYVHRIGRTGRAGKSGTSISFACEDDA 377

Query: 355 KHIDAIEKLIEKKV 368
             ++ IEKL+ K +
Sbjct: 378 LRLEPIEKLLGKPI 391


>gi|288801723|ref|ZP_06407165.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           melaninogenica D18]
 gi|288335765|gb|EFC74198.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           melaninogenica D18]
          Length = 640

 Score =  261 bits (666), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 138/377 (36%), Positives = 230/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+S ++  A+ + G+  P P+Q + IP +L  R+DV  +AQTGTGKTA+F LP+L 
Sbjct: 4   FEELGVSEEIRRAISELGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++      +  + ++L PTREL  Q+AD+ +++ K   +L +A + GG   + Q ++L 
Sbjct: 64  RID---TSSKETQAIVLSPTRELCLQIADDLKEFSKYIPHLHIAAVYGGASIDTQIRQLR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGR++D  +RGK  ++ +  +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 HGVQIIVATPGRLIDLMHRGKARLDKVRNVVLDEADEMLNMGFQESITEILTGVPEDRNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E+++V++ +L + K I V + +  AE++ H +    A+   K   L++L+ 
Sbjct: 181 LLFSATMSREVERVAKGYLHDYKEIVVGSRNEGAESVNHIYYMVNAR--DKYLALKRLVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   I+FC  K     +   L K G++  A+HG++ Q+ R   +  F+    Q++V
Sbjct: 239 FYPKI-YAIVFCRTKVETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHLTQILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  ENY HR GRTGRAG+ G + +++   +   +  I
Sbjct: 298 ATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKYKVRNI 357

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ I K  D+++G L S
Sbjct: 358 EREISK--DFVDGTLPS 372


>gi|323343824|ref|ZP_08084051.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
           ATCC 33269]
 gi|323095643|gb|EFZ38217.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
           ATCC 33269]
          Length = 626

 Score =  261 bits (666), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 134/367 (36%), Positives = 225/367 (61%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+S ++  A+ + G+  P P+Q + IP +L   +DV  +AQTGTGKTA++ +P+L 
Sbjct: 4   FEELGVSEEIRRAITELGFETPMPVQQEVIPYLLGNGNDVVALAQTGTGKTAAYGIPILQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            ++  +   +  + L+L PTREL  Q+AD+   + K  N L V  + GG   EAQ + ++
Sbjct: 64  KIDTSK---KETQALVLSPTRELCLQIADDLNDFSKYINGLHVVAVYGGTSIEAQIRTIK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++D  +RG   ++++  +V+DEAD ML+MGF   I  I   +P  R T
Sbjct: 121 RGVQIIVATPGRLIDLMHRGVAKLDSVANVVLDEADEMLNMGFSESINEIFEGIPQDRNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E++K+++N+L + K I V + +  AE++ H +    A+   K   L++++ 
Sbjct: 181 LLFSATMSKEIEKIAQNYLHDAKEIVVGSRNEGAESVNHIYYMVNAK--DKYLALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   IIFC  K+    +   L   G++  A+HG++ Q+ R   +  F++   Q +V
Sbjct: 239 YYPHI-FAIIFCRTKRETQEIADKLIHDGYNAEALHGDLSQQQRDLTMQKFRQHMTQFLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G + +++   +   + AI
Sbjct: 298 ATDVAARGLDVEDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHTRERSKMRAI 357

Query: 361 EKLIEKK 367
           EK+I K+
Sbjct: 358 EKVIGKQ 364


>gi|88811449|ref|ZP_01126704.1| ATP-dependent RNA helicase [Nitrococcus mobilis Nb-231]
 gi|88791338|gb|EAR22450.1| ATP-dependent RNA helicase [Nitrococcus mobilis Nb-231]
          Length = 437

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/384 (36%), Positives = 225/384 (58%), Gaps = 11/384 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILE 64
           LGL   ++  + +AG+   TP+Q   +P++LQ HDV   AQTGTGK+A+F+L  M  ++ 
Sbjct: 14  LGLHESLLLGIKEAGFSHCTPVQAAALPVLLQHHDVAAQAQTGTGKSAAFLLATMHYLMT 73

Query: 65  KGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
              A  +  P  LIL PTRELA Q+  + EK G    +  A + GGI +E Q  +L +G 
Sbjct: 74  TPVAENKTGPWALILAPTRELALQIHRDAEKLGYFTGMRCAAIYGGIGYEPQRAELTQGV 133

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQTL 181
           D++I TPGRI+D + +    ++NIE++V+DEADRM DMGFI  ++ +   +P    R  +
Sbjct: 134 DIIIGTPGRIIDFYKQRVFSLDNIEVVVLDEADRMFDMGFITDVRYLLRRMPPAPDRINM 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+++ +++++   +  P+ I +     TAE +       +   + K  LL  +L+ 
Sbjct: 194 LFSATLSERVKELAYEHMNAPETIAIEPEQVTAEKVRQSLY--HVASADKIGLLLGVLRQ 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           QD  +  ++F N K++   +   L   GF    I G+I Q+ R ++L  F+EG + ++VA
Sbjct: 252 QDATRT-LVFVNTKRDAERVTAYLVGNGFDAEVISGDIPQKKREQLLQRFQEGKLPMLVA 310

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGL IPDV  + N+D+P  AE+Y+HRIGRT RAG  G A +   +  +  +  IE
Sbjct: 311 TDVAARGLHIPDVSRIVNYDLPQNAEDYVHRIGRTARAGASGDAISFACEAYVYSLPEIE 370

Query: 362 KLIEKKV--DWLNGDL--SSLNPP 381
             I +K+  +  +  L  + +NPP
Sbjct: 371 AYIHQKIPAEMASSQLIATDINPP 394


>gi|163754240|ref|ZP_02161363.1| possible ATP-dependent RNA helicase [Kordia algicida OT-1]
 gi|161326454|gb|EDP97780.1| possible ATP-dependent RNA helicase [Kordia algicida OT-1]
          Length = 450

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 152/411 (36%), Positives = 234/411 (56%), Gaps = 15/411 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS ++  A+ D G+  PTPIQ ++  ++    DV GIAQTGTGKT +++LP+L  
Sbjct: 4   FQDFDLSKQLHYAIEDLGFTTPTPIQEQSFSVIRGGKDVVGIAQTGTGKTFAYMLPLLRD 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K   +V  PR L+L PTREL  QV +  E + K  N+ +  + GG+    Q + L++G
Sbjct: 64  L-KFSKQVN-PRILVLVPTRELVIQVVEQIELFAKYINVRIVGVYGGVNMNTQAQSLQQG 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           AD+++ TPGR+ D      L + +I+ LVIDE D MLD+GF   I NI  L+P  RQ ++
Sbjct: 122 ADIVVATPGRLYDLVLSRALQLKSIKKLVIDEVDVMLDLGFRFQITNIFELLPEQRQNIM 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATMTD++  + ++F   P +I +    +  + I     A    Y+ K  LL  LL+ +
Sbjct: 182 FSATMTDDVNLLIDDFFIAPHKISIAVSGTPLDNISQTCYAVQNFYT-KVNLLTHLLKDK 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQ-GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +     ++F + K+    L   L+K  G  V  IH N  Q  R++ + NF  G  +++VA
Sbjct: 241 EIYSKVLVFISNKRIADRLFDCLQKDFGEEVAVIHSNKTQNYRIRSIENFNTGENRILVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  + HVFNF+ PN  ENY+HRIGR GRA   G A     K+++++ +AIE
Sbjct: 301 TDVMARGLDLDMITHVFNFNTPNYPENYMHRIGRAGRAKAKGNAVLFYTKKELEYKEAIE 360

Query: 362 KLIEKKVDWLNG----DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           KL+  ++  L      ++S+   P E+  I + N+       P K+ G ++
Sbjct: 361 KLMNYEIPQLEFPEEVEISTQLAPEEQTRIREVNN-------PLKTEGLEK 404


>gi|189426069|ref|YP_001953246.1| ATP-dependent RNA helicase DbpA [Geobacter lovleyi SZ]
 gi|189422328|gb|ACD96726.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 465

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 148/380 (38%), Positives = 225/380 (59%), Gaps = 12/380 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P ++  +   GY   TPIQ  ++P +L   D+   A+TG+GKTA+F + +L+ 
Sbjct: 6   FSSLHLKPAMLKNLASLGYAAMTPIQAHSLPPILASKDLIARAKTGSGKTAAFGIGLLSR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+    +++    L+L PTRELA QVA    +  +   N+ V  + GG+PF  Q   LE 
Sbjct: 66  LDTTALQLQ---ALVLCPTRELADQVAKELRRLARFTENIRVLTVCGGVPFGPQLGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR+LDH  RG L +++++ LV+DEADRMLDMGF   I+++ +  P  RQTL
Sbjct: 123 GAHVVVGTPGRLLDHLRRGSLDLSSLQTLVLDEADRMLDMGFQDDIRSLIAAAPARRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQLLQ 240
           LFSAT  D +  +S    Q P  + V+     A TIE  F A    Q S+  A +    +
Sbjct: 183 LFSATYPDSIADMSAAMQQTPVEVSVDE-DHVAGTIEQHFYAVEPDQRSEAVARILGRYR 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            + T+    +FCN K +   L   L+++GF+  AIHG+++QR R ++L  F   +  ++V
Sbjct: 242 PESTL----VFCNTKLDCQELADDLKERGFAALAIHGDLEQRERDQVLVRFSNKSASVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V NF++    E + HRIGRTGRAG  G A +LV++ D + I  +
Sbjct: 298 ATDVAARGLDIKELAAVINFELSRNPEVHTHRIGRTGRAGEQGLAISLVSRRDSRLIKGM 357

Query: 361 EKLIEKKVDWLNGDLSSLNP 380
           E+ +  ++D    + SSL P
Sbjct: 358 EEDLACRIDL--QEFSSLAP 375


>gi|148237396|ref|NP_001085167.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Xenopus laevis]
 gi|47938654|gb|AAH72214.1| MGC81303 protein [Xenopus laevis]
          Length = 448

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 139/367 (37%), Positives = 223/367 (60%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG++  +  A    G+ +PT IQI+ IP+ LQ  D+ G+A+TG+GKT +F LP+L  
Sbjct: 21  FRDLGVTDVLCEACEQLGWKQPTKIQIEAIPMALQGRDIIGLAETGSGKTGAFALPILQT 80

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L + 
Sbjct: 81  LLESPQRLY---ALVLTPTRELAFQISEQFEALGSSIGVKSAVIVGGIDMMSQSLALAKK 137

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             ++I TPGR++DH    K   +  I+ LV+DEADR+L+M F   +  I  ++P  R+T 
Sbjct: 138 PHIVIATPGRLIDHLENTKGFNLRAIKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF 197

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT ++ K+    L++P +  V++   T E ++  +V   +++  K + L  +L +
Sbjct: 198 LFSATMTKKVHKLQRAALKDPVKCAVSSKYQTVEKLQQFYVFIPSKF--KDSYLVYIL-N 254

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + +IFC+   N   +   L   GF+   +HG + Q  R+  L+ FK  +  +++A
Sbjct: 255 ELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMGQNKRLGALNKFKAKSRSILLA 314

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V++ D++    IE
Sbjct: 315 TDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRIE 374

Query: 362 KLIEKKV 368
            LI KK+
Sbjct: 375 HLIGKKL 381


>gi|317180053|dbj|BAJ57839.1| ATP-dependent RNA helicase [Helicobacter pylori F32]
          Length = 492

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 82  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +   + T   I   F        ++   + +LL +Q
Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374

Query: 363 LIEKKVDWL 371
            I+ +++  
Sbjct: 375 EIDSEIELF 383


>gi|297569193|ref|YP_003690537.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925108|gb|ADH85918.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 528

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 153/424 (36%), Positives = 244/424 (57%), Gaps = 18/424 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L  +++ A+  +G+   TPIQ + +P  L  HD  G AQTGTGK+A+F++ ++T 
Sbjct: 102 FHDLDLPQELMRAIHASGFQYCTPIQAEILPPTLAGHDAFGKAQTGTGKSAAFLISIITR 161

Query: 63  LEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L +    V     +P+ LIL PTRELA Q+  + E+  +   L    + GG  +E Q K 
Sbjct: 162 LLREPDTVPRQLALPKALILAPTRELAIQIHRDAEELTQYSELNCVAVFGGTDYEKQRKM 221

Query: 119 LERG-ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP- 175
            E+   D+LI TPGR+LD F R K++ +  + +LVIDEADR+LDMGFIP ++ I    P 
Sbjct: 222 FEQAPVDLLIATPGRLLD-FARQKVVSLKEVRVLVIDEADRLLDMGFIPDVRRIIQQTPE 280

Query: 176 -FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTL FSAT+  ++  +S  + ++P  +E+      ++ +E       A+  +K  +
Sbjct: 281 KSQRQTLFFSATLNSQIANLSAQWTKDPVTVEIEPEQVASDRVEQRVYMVTAK--EKMTV 338

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L+  +  ++  I+FCN++     +   L + G S   + G + Q+ RMK L NFKEG
Sbjct: 339 LYNLITGKQ-LERVIVFCNRRDVTRRVRERLYRHGISCAMLSGEVSQQQRMKTLDNFKEG 397

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+A RGL I  + HV N+++P  AE+Y+HRIGRTGRAG  G + +   +E+ 
Sbjct: 398 KIRVLVATDVAGRGLHIEGISHVINYNLPEDAEDYVHRIGRTGRAGASGISVSFADEEES 457

Query: 355 KHIDAIEKLIEKKVDWLNGD---LSSLNPPLEK---IDIAQHNHARKNNPIPQKSTGFDR 408
            ++ AIE+ + +K+D +  +   L  L PP++K   +D     +    +  P + +G  R
Sbjct: 458 FYLPAIEEYMGRKLDCVYPEDELLIPLPPPVQKAPPVDKNLSGNQGGRSGKPGRKSGPPR 517

Query: 409 RKKN 412
           R  N
Sbjct: 518 RSSN 521


>gi|321313476|ref|YP_004205763.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
 gi|320019750|gb|ADV94736.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
          Length = 479

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 133/362 (36%), Positives = 214/362 (59%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  +S  ++ A+   GY +PT +Q   IP  L+R D+   +QTG+GKTASF +P+  +
Sbjct: 4   FKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLCEL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                 +   P+ LIL PTRELA QV ++    G+   +    + G   F+ Q  +L++ 
Sbjct: 64  ANWDENK---PQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQK 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGR+LDH  +G L ++ +  LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 121 SHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTML 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +++K+S  ++Q P+ IE+     T   IEH  +    +   K +LL+ +L ++
Sbjct: 181 FSATLPQDIEKLSRQYMQKPEHIEIKAAGLTTRNIEHAVIQVREE--NKFSLLKDVLMTE 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  K++V  L   L+  G+    IHG + Q  R  +++ FK G  + +VA+
Sbjct: 239 NP-DSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++  V N+D+P   E+Y+HR GRTGRAG  GKA + V   + + +  IE+
Sbjct: 298 DVAARGIDIENISLVINYDLPVEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEE 357

Query: 363 LI 364
            I
Sbjct: 358 YI 359


>gi|212633329|ref|YP_002309854.1| ATP-dependent RNA helicase RhlB [Shewanella piezotolerans WP3]
 gi|226739551|sp|B8CHZ1|RHLB_SHEPW RecName: Full=ATP-dependent RNA helicase rhlB
 gi|212554813|gb|ACJ27267.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 437

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 143/383 (37%), Positives = 233/383 (60%), Gaps = 11/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FAD  L  +V  A+ + G+   TPIQ  ++P++L + D+ G AQTGTGKT +F++     
Sbjct: 11  FADFPLHKEVQQALNEVGFEFCTPIQALSLPILLAKKDIAGQAQTGTGKTLAFLVATFNH 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT       ++  PR +I+ PTRELA Q+A +     K+  L V ++ GG  +EAQ K 
Sbjct: 71  LLTEAAPTERKINQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGEGYEAQRKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176
           L++G D+LI T GRI+D+  +G + ++ I+ +V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LDKGIDILIGTTGRIIDYVRQGVIDVSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAK 190

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           +R  +LFSAT++ ++Q+++ + +  P+++E+     T++ I E  F   Y    +K  LL
Sbjct: 191 SRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIF---YPSMEEKMPLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL+ +D  +  I+F N K +   +   LE  G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 LSLLE-EDWPEKAIVFSNTKHSCEKVWSWLEGDGHRVGLLTGDVPQKKRLRILEQFTSGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG+ G + +   +E   
Sbjct: 307 IDVLVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEEYAL 366

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
           ++ AIE  I+  +   + D  +L
Sbjct: 367 NLPAIESYIQHSIPVTSYDSEAL 389


>gi|15644875|ref|NP_207045.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori 26695]
 gi|2313340|gb|AAD07315.1| ATP-dependent RNA helicase, DEAD-box family (deaD) [Helicobacter
           pylori 26695]
          Length = 492

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 82  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +   + T   I   F        ++   + +LL +Q
Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374

Query: 363 LIEKKVDWL 371
            I+ +++  
Sbjct: 375 EIDSEIELF 383


>gi|327313656|ref|YP_004329093.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
 gi|326944744|gb|AEA20629.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
          Length = 572

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 144/377 (38%), Positives = 227/377 (60%), Gaps = 12/377 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L+  V+ A+ D  + + TP+Q K IP +L+ +DV G+AQTGTGKTA+++LP+L
Sbjct: 1   MYFEDLDLNDNVLDALYDMRFDECTPVQEKCIPEILKGNDVLGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL----TVALLIG--GIPFEA 114
           + L  G         +I+ PTRELA Q+    + +   Y L     VA+  G  G  ++ 
Sbjct: 61  SKLADGGYPESAINCVIMSPTRELAQQIDQAMQGFA--YYLDGVSCVAVYGGNDGNRYDQ 118

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           + K L  GADV+I TPGR + H + G + ++ +   ++DEADRMLDMGF   I  I   +
Sbjct: 119 ELKSLSLGADVVIATPGRFISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKKL 178

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P + QT++FSATM  +++++++  L+NP  I++   S  AE I       Y   ++K  +
Sbjct: 179 PASCQTIMFSATMPKKIEELAKTLLKNPVEIKLAV-SKPAEKIHQMAYVCYE--TQKMGI 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           ++ + ++ D +K  IIF   K+ V  +  SL ++  +   +H ++DQ  R  ++  FK G
Sbjct: 236 IKDIFKAGD-LKRVIIFSGSKQKVKQIAASLGRKHINCGEMHSDLDQEQRNDVMFKFKSG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I ++VA+D+ ARG+DI D+  V N+DVP+ AE+Y+HRIGRT RA R GKA T V  +DI
Sbjct: 295 QIDVLVATDIVARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGKAITFVNVDDI 354

Query: 355 KHIDAIEKLIEKKVDWL 371
            +   IE  ++K+V+ +
Sbjct: 355 YYFKQIESFLDKEVEKI 371


>gi|254778953|ref|YP_003057058.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter
           pylori B38]
 gi|254000864|emb|CAX28796.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter
           pylori B38]
          Length = 492

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 82  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +   + T   I   F        ++   + +LL +Q
Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374

Query: 363 LIEKKVDWL 371
            I+ +++  
Sbjct: 375 EIDSEIELF 383


>gi|260549866|ref|ZP_05824082.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
           [Acinetobacter sp. RUH2624]
 gi|260407116|gb|EEX00593.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
           [Acinetobacter sp. RUH2624]
          Length = 486

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 140/377 (37%), Positives = 227/377 (60%), Gaps = 15/377 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP L  
Sbjct: 28  FAEFSLHETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLNN 87

Query: 63  L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111
           L          E+ +A V  P  L++ PTRELA QV+ +   + ++   + +A ++GG+P
Sbjct: 88  LAGQETFVPFKERMKA-VTQPNILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 146

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           F  Q ++L +GA V++ TPGR+LD  NR ++ ++ ++ L++DEADRMLD+GF   ++ I+
Sbjct: 147 FAKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEADRMLDLGFSEDLEAIS 205

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            L    +QTL+FSAT  D + +++   +++P RI + T  ST   I      T     KK
Sbjct: 206 ELAANRKQTLMFSATFADRIIRLAACMMKDPMRIAIETGHSTNTDITQTLHWTDGFEHKK 265

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L   L  S + +   ++F + +++   L   L + G SV A+HG + Q  R + L + 
Sbjct: 266 KLLTHWL--SDENLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 323

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL   
Sbjct: 324 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATY 383

Query: 352 EDIKHIDAIEKLIEKKV 368
            +   I A+E+ +E ++
Sbjct: 384 RERGKIRALEEYLEARL 400


>gi|261839104|gb|ACX98869.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori 52]
          Length = 492

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 82  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +   + T   I   F        ++   + +LL +Q
Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNADITQRFYVINEH--ERAEAIMRLLDTQ 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRTSIMAFKKNDADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374

Query: 363 LIEKKVDWL 371
            I+ +++  
Sbjct: 375 EIDSEIELF 383


>gi|260943624|ref|XP_002616110.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238849759|gb|EEQ39223.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 477

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 147/371 (39%), Positives = 217/371 (58%), Gaps = 15/371 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L P+++ A+    + KPTPIQ + IP  L+  DV G+A TG+GKTA+F +P+L  
Sbjct: 67  FTELKLIPELLEAIQSMKFTKPTPIQAEAIPHALEGKDVIGLAVTGSGKTAAFAIPILQS 126

Query: 63  LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   +    +P   L+L PTRELA Q+ D F+  G    L    ++GG+    Q + L R
Sbjct: 127 LWHDQ----LPYYCLVLSPTRELAYQIKDTFDALGSGMGLRACCIVGGMDMMDQARDLMR 182

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGRI+DH    K   + N++ LV+DEADR+LD+ F P +  I  ++P  R T
Sbjct: 183 KPHVIVATPGRIVDHLEHTKGFSLKNLKYLVMDEADRLLDLDFGPELDKILRVIPRERNT 242

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT++++K+    L NP RI V++   TA+ +    +     Y  K   L  LL 
Sbjct: 243 YLFSATMTNKIEKLQRASLNNPVRIAVSSKYQTADNLVQSMMLVSDGY--KNTYLVHLL- 299

Query: 241 SQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++   K+ IIF   C   +    L   L   GFS   +HG + Q  R+  L+ FK G   
Sbjct: 300 NEFVGKSIIIFTRTCAHSQRTALLARIL---GFSAVPLHGQLSQSQRLGSLNKFKSGKAN 356

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIP V  V N+D+P  ++ YIHR+GRT RAGR GK+ +LV + D++  
Sbjct: 357 ILVATDVAARGLDIPAVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLVTQYDLEMY 416

Query: 358 DAIEKLIEKKV 368
             IE +++KK+
Sbjct: 417 LRIEAVLQKKL 427


>gi|296169013|ref|ZP_06850678.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295896310|gb|EFG75967.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 443

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 144/375 (38%), Positives = 219/375 (58%), Gaps = 14/375 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+LG+  ++V A+ + G  +P  IQ  T+PL L   D+ G A+TG GKT +F +P+L
Sbjct: 10  LTFANLGVRDEIVRALAEKGIERPFAIQELTLPLALAGDDLIGQARTGMGKTLAFGVPLL 69

Query: 61  TILEKG---RARVRMPRTLILEPTRELAAQV------ADNFEKYGKNYNLTVALLIGGIP 111
             +  G   RA    PR L++ PTREL  QV      A  + K   +  L+V  + GG P
Sbjct: 70  NRITAGVGVRALNGTPRALVVVPTRELCLQVHGDLSDAAKYLKAEGDRPLSVVSIYGGRP 129

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q + L  GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+ I 
Sbjct: 130 YEPQIEALRAGADVVVGTPGRLLDLSQQGHLQLGGLSMLVLDEADEMLDLGFLPDIERIL 189

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYS 229
             +P  RQ++LFSATM   +  ++  F+  P  I    P S A  +T E      +A   
Sbjct: 190 RQIPEERQSMLFSATMPGPIITLARTFMNQPTHIRAEAPHSAATHDTTEQFVYRAHAL-- 247

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            K  ++ ++LQ++      +IF   K+    +   L ++GF V A+HG++ Q +R K L 
Sbjct: 248 DKVEMVSRILQAEGRGAT-MIFTRTKRTAQKVADELAERGFKVGAVHGDLGQIAREKALK 306

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+ G I ++VA+D+AARG+DI D+ HV N+ +P   + Y+HRIGRTGRAG+ G A TLV
Sbjct: 307 AFRNGDIDVLVATDVAARGIDIDDITHVINYQIPEDEQAYVHRIGRTGRAGKTGIAVTLV 366

Query: 350 AKEDIKHIDAIEKLI 364
             +++     I+K +
Sbjct: 367 DWDELPRWSMIDKAL 381


>gi|237807374|ref|YP_002891814.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237499635|gb|ACQ92228.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 642

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 137/368 (37%), Positives = 216/368 (58%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL+  ++ AV   GY  P+PIQ   IP +L+  D+ G AQTGTGKT +F LP+L+ 
Sbjct: 10  FSELGLAAPILKAVAAVGYEDPSPIQAAAIPPLLEGRDLLGQAQTGTGKTGAFALPILSR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L   +   ++   LIL PTRELA QVA+  + Y +   +  V  + GG  +++Q + L R
Sbjct: 70  LNLTQMDTQV---LILAPTRELAIQVAEACQSYAQFIPDFHVLPIYGGSSYDSQLRALRR 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++D   RGKL ++ ++ LV+DEAD ML MGFI  ++ +    P  RQ  
Sbjct: 127 GAQVVVGTPGRVMDMMRRGKLDLSALKTLVLDEADEMLRMGFIDDVEWVIEQCPLDRQIA 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +++++++   L+ P  I++ + +STA  I   +      +          ++ 
Sbjct: 187 LFSATMPEQIRRIAHRHLKTPVEIKIASKTSTAANIRQRYWLVSGLHKLDAMTRMLEVEQ 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D +   ++F   K     L   L  +G S  A+HG+I Q+ R + +   K G I +++A
Sbjct: 247 YDAL---LVFVRTKTAAEELTSKLSARGHSCEALHGDIPQKLRERTVEKLKAGQIDILIA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A   VA  + + +  IE
Sbjct: 304 TDVAARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLRMIE 363

Query: 362 KLIEKKVD 369
           +   + ++
Sbjct: 364 QATRQPIE 371


>gi|183221518|ref|YP_001839514.1| ATP-dependent RNA helicase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911602|ref|YP_001963157.1| superfamily II DNA and RNA helicase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776278|gb|ABZ94579.1| Superfamily II DNA and RNA helicase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779940|gb|ABZ98238.1| ATP-dependent RNA helicase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 529

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 219/368 (59%), Gaps = 2/368 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L     +  A+   GYV+ TPIQ K+IP  ++ +D+ G+AQTGTGKT +F+LP L
Sbjct: 1   MKFNELPFHESLSKALDKIGYVELTPIQAKSIPFAMEGNDLTGLAQTGTGKTMAFLLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L        +P  L+L PTREL  Q+A+  +K  +  +L VA +IGG  +++Q + L 
Sbjct: 61  HRLLSAEEEEALPYALVLAPTRELTIQIAEEAKKLLEFTDLGVATIIGGTDYKSQEQALG 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             A +++ TPGR++D      L + NI+++++DEADRM DMGF+  ++ I       +Q+
Sbjct: 121 NKACIIVATPGRLIDFVKNHGLSLENIKVVILDEADRMFDMGFVQDLKYIFHKCKNRKQS 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT++ E+ +++  +L +P  + +N      E I+   +  +    +K   L   L 
Sbjct: 181 LLFSATLSYEVVRLASKYLNDPIEVHINPEKVITERIDQSLL--HLGREEKLPYLVNSLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +      GIIF N K N+  +  +L + G +   +   +DQ+ R+++L +FK G  + ++
Sbjct: 239 NYPIEGLGIIFTNYKMNIPKIVSALRRFGITATGLSSELDQKKRIRLLRDFKAGKYKYLI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RG+DI ++  V+N+D+P  AENY+HRIGRT RAGR G++    ++ D   ++ I
Sbjct: 299 ATDVASRGIDIENIDVVYNYDLPQDAENYVHRIGRTARAGRKGQSIGFCSETDYTELERI 358

Query: 361 EKLIEKKV 368
           EK +  K+
Sbjct: 359 EKYLNSKI 366


>gi|108562675|ref|YP_626991.1| ATP-dependent RNA helicase [Helicobacter pylori HPAG1]
 gi|217031464|ref|ZP_03436969.1| hypothetical protein HPB128_21g22 [Helicobacter pylori B128]
 gi|298736807|ref|YP_003729337.1| putative helicase [Helicobacter pylori B8]
 gi|107836448|gb|ABF84317.1| ATP-dependent RNA helicase [Helicobacter pylori HPAG1]
 gi|216946664|gb|EEC25260.1| hypothetical protein HPB128_21g22 [Helicobacter pylori B128]
 gi|298356001|emb|CBI66873.1| putative helicase [Helicobacter pylori B8]
          Length = 492

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 82  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +   + T   I   F        ++   + +LL +Q
Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374

Query: 363 LIEKKVDWL 371
            I+ +++  
Sbjct: 375 EIDSEIELF 383


>gi|225427683|ref|XP_002273691.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 797

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 140/373 (37%), Positives = 207/373 (55%), Gaps = 25/373 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  LS +++ AV  AGY  P+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPMLT 
Sbjct: 294 WVESKLSTELLKAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTY 353

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + +            P  +++ PTRELA Q+ D   K+     + V  ++GG   E Q  
Sbjct: 354 ISRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGF 413

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           ++ +G +V+I TPGR++D   R   ++N    +V+DEADRM+DMGF P +  +   +P +
Sbjct: 414 RIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 473

Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
                            R T +FSATM   +++++  +L+NP  + + T     + I   
Sbjct: 474 NLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQH 533

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
            +    + S+K   LQ+LL      K  I+F N KK+  NL   L+K G+ V  +HG   
Sbjct: 534 VIMM--KESEKMFKLQKLLDELGD-KTAIVFINTKKSADNLAKGLDKAGYRVTTLHGGKS 590

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q  R   L  F+     ++VA+D+A RG+DIPDV HV N+D+P   E Y HRIGRTGRAG
Sbjct: 591 QEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAG 650

Query: 341 RHGKAFTLVAKED 353
           + G A T +   D
Sbjct: 651 KTGVATTFLTLHD 663


>gi|295702900|ref|YP_003595975.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294800559|gb|ADF37625.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
          Length = 481

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 142/399 (35%), Positives = 231/399 (57%), Gaps = 12/399 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+  GLS KV  A+    Y  PT +Q K +P+ L+  DV   +QTG+GKTASF +P+  +
Sbjct: 6   FSQYGLSDKVAKALSSLQYNHPTEVQSKVLPIALEERDVVVKSQTGSGKTASFGIPLCEL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +     +   P+ L+L PTRELAAQV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VNWEENK---PQALVLTPTRELAAQVKEDITNIGRFKRIKAAAVYGKSPFAKQKVELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +  L +  I  LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKETLALEKIRYLVIDEADEMLNMGFIDQVEAIIQHLPSERVTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  +++ P  +E+     T  TI+H  ++   +  +K  LL+ +   +
Sbjct: 183 FSATLPEDIEELSRKYMKKPVDVEIKANGLTTSTIDHSVISVGNE--RKFELLKDVTTVE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++ V  L   L+  G+    IHG + Q  R +++++FK+G  + +VA+
Sbjct: 241 NP-DSCIIFCRTQEQVNTLLDDLDDLGYPCDKIHGAMVQEDRFEVMNDFKKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG+ GKA T V   + + +  IE+
Sbjct: 300 DVAARGIDIDNITHVINYDLPLEKESYVHRTGRTGRAGKKGKAITFVTPYEERMLSEIEE 359

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            I   +       +S  P  E++  A+     K N  P+
Sbjct: 360 YIGFSIP------TSTPPSKEEVQQAESAFTDKINERPE 392


>gi|262170498|ref|ZP_06038176.1| ATP-dependent RNA helicase DbpA [Vibrio mimicus MB-451]
 gi|261891574|gb|EEY37560.1| ATP-dependent RNA helicase DbpA [Vibrio mimicus MB-451]
          Length = 460

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 142/368 (38%), Positives = 224/368 (60%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P+++  +   G+   TPIQ +++P +L   DV G  +TG+GKTA+F L +L+ 
Sbjct: 6   FAALNLKPELLANLETMGFATMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLSN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+    L+L PTRELA QVA +    G+  +N+ V  L GG+P   Q   LE 
Sbjct: 66  LNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRTIHNIKVLTLCGGMPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH ++ ++ ++ +  LV+DEADRML+MGF   ++ I +  P  RQTL
Sbjct: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++++  +N   I+V     T+ +I   F       ++  AL   LL  
Sbjct: 183 LFSATYPASIEQIAQSVTRNAMMIKVAATHDTS-SIRQYFYKVDGSAARDEALETLLLHH 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q T  + ++FCN K+ V N+  +L + GFSV  +HG+++QR R + L  F   +I ++VA
Sbjct: 242 QPT--SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFN+D+    E ++HRIGRTGRAG  G AF+  +  +   +  I+
Sbjct: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359

Query: 362 KLIEKKVD 369
           + ++  ++
Sbjct: 360 EYMDIAIE 367


>gi|326801263|ref|YP_004319082.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21]
 gi|326552027|gb|ADZ80412.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21]
          Length = 597

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 135/372 (36%), Positives = 224/372 (60%), Gaps = 18/372 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F+ LG+   VV A+   G+ KPTPIQ + IP +L    D  G+AQTGTGKTA+F LP+L 
Sbjct: 4   FSQLGIRHDVVNAISALGFEKPTPIQEQAIPALLTGSSDFVGLAQTGTGKTAAFGLPLLE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           +L+  +     P+ L+L PTREL  Q+ ++ + + KN  N+ V  + GG     Q +++ 
Sbjct: 64  LLDFSQ---NTPQALVLCPTRELCLQITNDLKNFSKNLDNVHVVAVYGGANISDQLRQIR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  +  + +  +V+DEAD ML+MGF   I +I S  P  ++T
Sbjct: 121 RGVQIVVATPGRMLDIIGRKAIDFSGVRYVVLDEADEMLNMGFQEDINDILSTTPDEKKT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT-----YAQYSKKCALL 235
            LFSATM  E++++++N++ +P  + V T ++    I+H +        YA + +     
Sbjct: 181 WLFSATMPAEVRRIAKNYMTDPFELTVGTKNTGNANIDHEYYIVRPRDKYAAFKRIVDFN 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            ++         GI+FC  K     +  +L K G++  ++HG++ Q+ R K++  ++E +
Sbjct: 241 PEIF--------GIVFCRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRERS 292

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +QL++A+D+AARG+D+ +V HV NF +P+  ENY HR GRT RAG+ G + +LV  +++ 
Sbjct: 293 LQLLIATDVAARGIDVNNVTHVINFSLPDEIENYTHRSGRTARAGKTGVSISLVTSKELG 352

Query: 356 HIDAIEKLIEKK 367
            I  IE++I K+
Sbjct: 353 KIRQIERVIGKQ 364


>gi|325860554|ref|ZP_08173658.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
 gi|325481939|gb|EGC84968.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
          Length = 572

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 144/377 (38%), Positives = 227/377 (60%), Gaps = 12/377 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L+  V+ A+ D  + + TP+Q K IP +L+ +DV G+AQTGTGKTA+++LP+L
Sbjct: 1   MYFEDLDLNDNVLDALYDMRFDECTPVQEKCIPEILKGNDVLGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL----TVALLIG--GIPFEA 114
           + L  G         +I+ PTRELA Q+    + +   Y L     VA+  G  G  ++ 
Sbjct: 61  SKLADGGYPESAINCVIMSPTRELAQQIDQAMQGFA--YYLDGVSCVAVYGGNDGNRYDQ 118

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           + K L  GADV+I TPGR + H + G + ++ +   ++DEADRMLDMGF   I  I   +
Sbjct: 119 ELKSLSLGADVVIATPGRFISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKKL 178

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P + QT++FSATM  +++++++  L+NP  I++   S  AE I       Y   ++K  +
Sbjct: 179 PASCQTIMFSATMPKKIEELAKTLLKNPVEIKLAV-SKPAEKIHQMAYVCYE--TQKMGI 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           ++ + ++ D +K  IIF   K+ V  +  SL ++  +   +H ++DQ  R  ++  FK G
Sbjct: 236 IKDIFKAGD-LKRVIIFSGSKQKVKQIAASLGRKHINCGEMHSDLDQEQRNDVMFKFKSG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I ++VA+D+ ARG+DI D+  V N+DVP+ AE+Y+HRIGRT RA R GKA T V  +DI
Sbjct: 295 QIDVLVATDIVARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGKAITFVNVDDI 354

Query: 355 KHIDAIEKLIEKKVDWL 371
            +   IE  ++K+V+ +
Sbjct: 355 YYFKQIESFLDKEVEKI 371


>gi|323519553|gb|ADX93934.1| superfamily II DNA/RNA helicase [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 606

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 143/378 (37%), Positives = 228/378 (60%), Gaps = 15/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP L  
Sbjct: 5   FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 64

Query: 63  L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111
           L          E+ +A V  P  L+L PTRELA QV+ +   + ++   + +A ++GG+P
Sbjct: 65  LAGQDTFVPFKERMKA-VTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           F  Q ++L +GA V++ TPGR+LD  NR +L ++ ++ L++DEADRMLD+GF   ++ I+
Sbjct: 124 FGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 182

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            L     QTL+FSAT  D + +++E  +  P+RI + T  ST   I      T   +  K
Sbjct: 183 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDG-FEHK 241

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL   L + +T+   ++F + +++   L   L + G SV A+HG + Q  R + L + 
Sbjct: 242 KKLLTHWL-ADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 300

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL   
Sbjct: 301 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATY 360

Query: 352 EDIKHIDAIEKLIEKKVD 369
            +   I A+E  +E +++
Sbjct: 361 RERGKIRALEDYLEARLN 378


>gi|261837694|gb|ACX97460.1| ATP-dependent RNA helicase [Helicobacter pylori 51]
          Length = 492

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 82  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +   + T   I   F        ++   + +LL +Q
Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374

Query: 363 LIEKKVDWL 371
            I+ +++  
Sbjct: 375 EIDSEIELF 383


>gi|52308057|gb|AAU38557.1| SrmB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 462

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 149/438 (34%), Positives = 232/438 (52%), Gaps = 19/438 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  LSP+++ A+   GY +PT IQ + IP  +   DV G A TGTGKTA+F+LP +  
Sbjct: 23  FEDFDLSPELLKALAQKGYARPTAIQSEAIPAAMDERDVLGSAPTGTGKTAAFLLPAIQH 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR L+L PTRELA QVA   E+  +   L++A + GG+ ++   +   +
Sbjct: 83  LLDYPRRKPGAPRVLVLTPTRELAMQVAQQAEELAQFTKLSIATITGGVAYQNHGEIFNK 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +          +EIL+ DEADRML MGF    + I++   + +QT 
Sbjct: 143 NQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKISAETRWRKQTF 202

Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  EL    +E  L +P +I+        + I   +    + Y  K  LL + + 
Sbjct: 203 LFSATLEGELLVDFAERILTDPVKIDAEPSRRERKKINQWYYHADS-YEHKVKLLARFIA 261

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   K GI+F  ++++V  L   L K+G     + G + Q  R   +   K G + L+V
Sbjct: 262 DEQVSK-GIVFVRRREDVRELSEILRKRGIRSTYLEGEMAQTQRNNAIDKLKNGIVTLLV 320

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K++  I
Sbjct: 321 ATDVAARGIDIEDISHVMNFDLPYNADTYLHRIGRTARAGKKGTAVSFVEGHDYKYLGKI 380

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           ++  E+               L K  I +    R   P   +     +++K Y  QK   
Sbjct: 381 KRYTEE---------------LLKPRIIEGLEPRTKAPKDGEIKTVSKKQKAYIRQKREE 425

Query: 421 PLKESEKISKLQQDIQEN 438
             K ++K +KL++   +N
Sbjct: 426 KRKTTQKKAKLRRQDTKN 443


>gi|320581153|gb|EFW95374.1| ATP-dependent RNA helicase [Pichia angusta DL-1]
          Length = 747

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 147/384 (38%), Positives = 224/384 (58%), Gaps = 14/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++ A+   GY KP+ IQ  +IP+ L   D+   A TG+GKTA++++P++  
Sbjct: 242 FQSLKLSRPILKALSALGYSKPSAIQSASIPIALLGKDIVAGAVTGSGKTAAYMIPIIER 301

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           L    +++   R ++L PTRELA QVAD  +K G+  N LT  L +GG+    Q ++L++
Sbjct: 302 LLYKPSKMPSTRVIVLAPTRELAIQVADVGKKIGQFVNGLTFGLAVGGLNLRQQEQELKK 361

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++DH  N     + ++E+LV DEADRML+ GF   +  I SL+P  RQT
Sbjct: 362 RPDIVIATPGRLIDHIRNSVSFNVESVEVLVFDEADRMLEEGFQKELTEILSLLPLNRQT 421

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++ + +  L+ P R+ +  P + A  +   FV    + S K ALL  +L 
Sbjct: 422 MLFSATMNSRIKSLIQLSLKKPVRVMIGAPKAAASELVQEFVRIRKRESSKPALLFNILS 481

Query: 241 SQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             D + + +I F ++K+    L  SL   G  V  +HG++ Q  R+K + +FK  T+ ++
Sbjct: 482 EMDGLHSRVIVFVSRKEMAHRLRISLGLLGLKVSELHGSLTQEQRLKAIVDFKNLTVPIL 541

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA--------- 350
           + +DLAARGLDIP +  V NFD+P   E Y+HR+GRT RAGR G + + V          
Sbjct: 542 ICTDLAARGLDIPKIELVINFDMPKTYEIYLHRVGRTARAGRKGLSISFVGESSQDRNIV 601

Query: 351 KEDIKHIDA--IEKLIEKKVDWLN 372
           KE IK ++     K I + V+W N
Sbjct: 602 KEAIKQVETENAGKAIGRNVNWEN 625


>gi|197287125|ref|YP_002152997.1| ATP-dependent RNA helicase RhlB [Proteus mirabilis HI4320]
 gi|227357184|ref|ZP_03841553.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
 gi|226739541|sp|B4F1V3|RHLB_PROMH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|194684612|emb|CAR46501.1| ATP-dependent RNA helicase [Proteus mirabilis HI4320]
 gi|227162716|gb|EEI47683.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
          Length = 432

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 153/421 (36%), Positives = 241/421 (57%), Gaps = 16/421 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F+D  L PKV+ A+   G+   T IQ  T+P+ ++ HD+ G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVIEALEKKGFSNCTQIQALTLPITVKGHDIAGQAQTGTGKTLAFLTSTFHY 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT   K       PR LI+ PTRELA Q+  + +   ++  + + L  GG  ++ Q K 
Sbjct: 71  LLTHPAKEGHEKNQPRALIMAPTRELAVQIYTDAQPLAQSTGVKMGLAYGGDGYDEQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176
           L  G D++I T GR++D+  +G + +N I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LNNGVDIVIGTTGRLIDYVKQGHINLNAIQVVVLDEADRMYDLGFIKDIRWLFRRMPNAA 190

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
            R  +LFSAT++  +++++   + NP+ +EV     T  +I E  F   Y    +K  LL
Sbjct: 191 ERMNMLFSATLSYRVRELAFEQMNNPEYVEVEPEQKTGFSIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++  +  IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G 
Sbjct: 248 QTLIE-EEWPERCIIFANTKHRCDDIWAHLAADGHRVGLLTGDVPQKKRLRILEDFTQGN 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG+ G + +L  +E   
Sbjct: 307 IDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGKSGNSISLACEEYAL 366

Query: 356 HIDAIEKLIEKK--VDWLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           ++ AIE  I+    V   N D  L+ L  P  +    Q    R+NN  P++     R  +
Sbjct: 367 NLPAIETYIQHAIPVSKYNSDALLTDLPEPKRRHRPRQ-GQPRRNNSAPRRGNNTQRNNR 425

Query: 412 N 412
           N
Sbjct: 426 N 426


>gi|258625772|ref|ZP_05720651.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
 gi|258582010|gb|EEW06880.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
          Length = 460

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 142/368 (38%), Positives = 224/368 (60%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P+++  +   G+   TPIQ +++P +L   DV G  +TG+GKTA+F L +L+ 
Sbjct: 6   FAALNLKPELLANLETMGFATMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLSN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+    L+L PTRELA QVA +    G+  +N+ V  L GG+P   Q   LE 
Sbjct: 66  LNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRTIHNIKVLTLCGGMPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH ++ ++ ++ +  LV+DEADRML+MGF   ++ I +  P  RQTL
Sbjct: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++++  +N   I+V     T+ +I   F       ++  AL   LL  
Sbjct: 183 LFSATYPASIEQIAQSVTRNAMMIKVAATHDTS-SIRQYFYKVDGSAARDEALETLLLHH 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q T  + ++FCN K+ V N+  +L + GFSV  +HG+++QR R + L  F   +I ++VA
Sbjct: 242 QPT--SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFN+D+    E ++HRIGRTGRAG  G AF+  +  +   +  I+
Sbjct: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359

Query: 362 KLIEKKVD 369
           + ++  ++
Sbjct: 360 EYMDIAIE 367


>gi|317008898|gb|ADU79478.1| ATP-dependent RNA helicase [Helicobacter pylori India7]
          Length = 492

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 82  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +   + T   I   F        ++   + +LL +Q
Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374

Query: 363 LIEKKVDWL 371
            I+ +++  
Sbjct: 375 EIDSEIELF 383


>gi|332673089|gb|AEE69906.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 83]
          Length = 492

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 82  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +   + T   I   F        ++   + +LL +Q
Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374

Query: 363 LIEKKVDWL 371
            I+ +++  
Sbjct: 375 EIDSEIELF 383


>gi|261878837|ref|ZP_06005264.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           bergensis DSM 17361]
 gi|270334579|gb|EFA45365.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           bergensis DSM 17361]
          Length = 632

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 137/367 (37%), Positives = 223/367 (60%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+S ++  A+ + G+V P P+Q + IP +L Q +DV  +AQTGTGKTA+F +P+L 
Sbjct: 4   FEELGVSEEIRRAIDELGFVNPMPVQEEVIPYLLGQGNDVIALAQTGTGKTAAFGIPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
             +  +   +  + LIL PTREL  Q+AD+   + K  + + +  + GG   EAQ + L 
Sbjct: 64  RTDPTK---KETQALILSPTRELCLQIADDLNAFAKYMDGMHILPVYGGASIEAQIRSLR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGR++D  NRG   ++N+  +V+DEAD ML+MGF   I  +   VP  R T
Sbjct: 121 HGVQIIVATPGRLIDLMNRGVAKLDNVSNVVLDEADEMLNMGFTDSINAVFEGVPRDRNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++K+++++L + K I V + +  AE + H +    A+   K   L++++ 
Sbjct: 181 LLFSATMGKEIEKIAKSYLNDYKEIVVGSRNEGAENVNHVYYMVNAK--DKYLALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GI+FC  K     +   L K G++  A+HG++ Q+ R   +  F++   QL+V
Sbjct: 239 YYPNIY-GIVFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRKHITQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   + +I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSIAIIHTREKHKVRSI 357

Query: 361 EKLIEKK 367
           EK+I K+
Sbjct: 358 EKIIGKE 364


>gi|168179718|ref|ZP_02614382.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|182669435|gb|EDT81411.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
          Length = 376

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 148/368 (40%), Positives = 220/368 (59%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS  ++  +     ++PTPIQ ++I L+   +DV   AQTGTGKT +F+LPM 
Sbjct: 2   IKFKELGLSDSIIDVLKKQRIIEPTPIQEESIMLIKNGNDVIAEAQTGTGKTLAFLLPMF 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E     +   + LI+ PTRELA Q+ +   K  +  +L +    GG    +Q KKL+
Sbjct: 62  ---ENISPDINAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH NR  L   +++ LV+DEAD ML MGF   +++I    P  RQT
Sbjct: 119 NNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++   +++PK I +     T + I+   + T  +  +K   L ++L 
Sbjct: 179 LCFSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNIKQVLIETTDR--RKQEDLCKILD 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     IIFC  K+ V  L  +L K+G++   +HG+I Q  R +I+ +FK   IQ ++
Sbjct: 237 EENPFM-AIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLI 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HVFN+D+P  AE+YIHRIGRTGRAG  G  F  VA +D + +  I
Sbjct: 296 ATDVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLGMI 355

Query: 361 EKLIEKKV 368
           EK I+ K+
Sbjct: 356 EKEIKFKI 363


>gi|330998021|ref|ZP_08321852.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
 gi|329569322|gb|EGG51102.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
          Length = 664

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 140/377 (37%), Positives = 225/377 (59%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+S ++  A+ + GY  P P+Q + IP +L   +DV  +AQTGTGKTA++ LP+L 
Sbjct: 4   FEELGVSAEIRQAIEEMGYEHPMPVQEEVIPYLLGVNNDVVALAQTGTGKTAAYGLPVLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++  R   +    LIL PTREL  Q+AD+ E Y K    + V  + GG   E Q + L 
Sbjct: 64  KVDASRNETQ---ALILSPTRELCLQIADDLENYSKYLPGVRVLPVYGGANIEPQIRTLR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR++D   R    + ++E +V+DEAD ML MGF   I  I + VP    T
Sbjct: 121 KGVQVIVATPGRLIDLMERKAASLEHVENVVLDEADEMLSMGFTESIDKILAGVPENHNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E++++S+ +L++ K I V + +  AET+ H +   +A+   K   L++++ 
Sbjct: 181 LLFSATMSREIERISKKYLRDAKEIVVGSRNEGAETVNHVYYMVHAK--DKYLALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   IIFC  +     +   L + G++  ++HG++ Q+ R   +  F++  +Q +V
Sbjct: 239 YYPKI-YAIIFCRTRLETQEVADKLIQDGYNADSLHGDLSQQQRDLTMQKFRQHRVQFLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  ENY HR GRTGRAG+ G +  +V   +   I  I
Sbjct: 298 ATDVAARGLDVEDLTHVINYGMPDDIENYTHRSGRTGRAGKKGTSICIVHTRERSKIREI 357

Query: 361 EKLIEKKVDWLNGDLSS 377
           EK+I K  +++ G++ S
Sbjct: 358 EKVIGK--EFVKGEMPS 372


>gi|308184052|ref|YP_003928185.1| ATP-dependent RNA helicase [Helicobacter pylori SJM180]
 gi|308059972|gb|ADO01868.1| ATP-dependent RNA helicase [Helicobacter pylori SJM180]
          Length = 492

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 82  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +   + T   I   F        ++   + +LL +Q
Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374

Query: 363 LIEKKVDWL 371
            I+ +++  
Sbjct: 375 EIDSEIELF 383


>gi|294651664|ref|ZP_06728967.1| ATP-dependent RNA helicase [Acinetobacter haemolyticus ATCC 19194]
 gi|292822443|gb|EFF81343.1| ATP-dependent RNA helicase [Acinetobacter haemolyticus ATCC 19194]
          Length = 647

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/378 (37%), Positives = 227/378 (60%), Gaps = 15/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  L   +  A+   G+  PTP+Q + IP  L+  D+   +QTG+GKTA+F+LP L  
Sbjct: 5   FAEFSLHETLQQALEGLGFTTPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64

Query: 63  L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111
           L          E+ +A V  P  L++ PTRELA QV+ +   + ++   + +A ++GG+P
Sbjct: 65  LAGQETFVPFKERMKA-VTQPTILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           F  Q ++L +GA V++ TPGR+LD  NR +L ++ +E L++DEADRMLD+GF   ++ I 
Sbjct: 124 FGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVESLIVDEADRMLDLGFAEDLEAIG 182

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            L     QTL+FSAT  D + +++E  + +P+RI + T  ST   +      T   +  K
Sbjct: 183 ELAANRNQTLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTDVTQTLHWTDG-FEHK 241

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL   L S +++   ++F + +++   L   L + G SV A+HG + Q  R + L + 
Sbjct: 242 KKLLTHWL-SDESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 300

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL   
Sbjct: 301 REGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGQAVTLATY 360

Query: 352 EDIKHIDAIEKLIEKKVD 369
            +   I A+E  ++ +++
Sbjct: 361 RERGKIRALEDYLDARLN 378


>gi|254786531|ref|YP_003073960.1| cold-shock DEAD box protein A dbpA [Teredinibacter turnerae T7901]
 gi|237683925|gb|ACR11189.1| cold-shock DEAD box protein A dbpA [Teredinibacter turnerae T7901]
          Length = 604

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 146/369 (39%), Positives = 223/369 (60%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++  V   GY +P+PIQ  TIP +++  DV G+AQTGTGKTA+F LP+L
Sbjct: 10  LGFADLNLPSSLLDTVRKLGYERPSPIQAATIPALIEGRDVIGMAQTGTGKTAAFALPIL 69

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             ++ G    + P+ L+L PTRELA QV++ F+ Y  N  N  V  + GG     Q + L
Sbjct: 70  AKIKSGS---KNPQALVLCPTRELAIQVSEAFQSYAANIPNFHVLPIYGGQDMRTQLRGL 126

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGR+LDH +R  L ++ +  +V+DEAD ML MGF   ++ I    P   Q
Sbjct: 127 QRGVQVIVGTPGRLLDHLDRRSLDLSELHTVVLDEADEMLRMGFNEDVEAILKKTPGNHQ 186

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   +++V++ +L+NP  +++ T  +T E IE  +       + K   L ++L
Sbjct: 187 IALFSATMPPPIRRVADTYLKNPVEVKIETSVTTNENIEQFYWLVSG--TNKLEALTRIL 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +D  +  IIF   K + V+L   L  +GFS   ++G+++Q  R + +   K G + ++
Sbjct: 245 EVED-FEGMIIFVRTKNSTVDLAERLNARGFSAAPLNGDMNQALRERTIEQLKGGKLDMI 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  + HV NFD+P   E Y+HRIGRTGR GR GKA   VA  + + + +
Sbjct: 304 IATDVAARGLDVERISHVLNFDIPYDDEAYVHRIGRTGRGGRTGKAILFVAPRERRMLRS 363

Query: 360 IEKLIEKKV 368
           IEK   +K+
Sbjct: 364 IEKTTRQKI 372


>gi|294657345|ref|XP_459659.2| DEHA2E08052p [Debaryomyces hansenii CBS767]
 gi|91207781|sp|Q6BQ61|RRP3_DEBHA RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|199432622|emb|CAG87892.2| DEHA2E08052p [Debaryomyces hansenii]
          Length = 477

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 216/370 (58%), Gaps = 13/370 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L P+++ A+    + KPTPIQ + IP  L+  D+ G+AQTG+GKTA+F +P+L  
Sbjct: 67  FNELKLIPELLEAIQQMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQA 126

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L + +A       L+L PTRELA Q+ + F+  G +  L    ++GG+    Q + L R 
Sbjct: 127 LWEAQAAYY---GLVLAPTRELAYQIKETFDALGSSMGLRSVCIVGGMDMMDQARDLMRK 183

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +L+ TPGRI+DH    K   + N++ LV+DEADR+LDM F P +  I  ++P  R T 
Sbjct: 184 PHILVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKIIPTQRTTY 243

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT+++ K+    L NP R+ V+    TA+ +    +     Y  K   L  LL +
Sbjct: 244 LFSATMTNKIAKLQRASLHNPVRVAVSNKYQTADNLVQSMMLVSDGY--KNTYLIHLL-N 300

Query: 242 QDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   K+ IIF   C   +    L   L   GFS   +HG + Q  R+  L+ FK G   +
Sbjct: 301 EFLGKSIIIFTRTCAHSQRTALLARIL---GFSAVPLHGQLTQAQRLGSLNKFKAGKANI 357

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLDIP V  V N+D+P  ++ YIHR+GRT RAG+ GK+ +L+ + D++   
Sbjct: 358 LIATDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGKSGKSISLITQYDLEMYL 417

Query: 359 AIEKLIEKKV 368
            IE ++ KK+
Sbjct: 418 RIESVLGKKL 427


>gi|317179357|dbj|BAJ57145.1| ATP-dependent RNA helicase [Helicobacter pylori F30]
          Length = 492

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 82  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +   + T   I   F        ++   + +LL +Q
Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374

Query: 363 LIEKKVDWL 371
            I+ +++  
Sbjct: 375 EIDSEIELF 383


>gi|218676540|ref|YP_002395359.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218324808|emb|CAV26511.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 468

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 145/370 (39%), Positives = 216/370 (58%), Gaps = 15/370 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
           +F+DLGL   ++  + +  Y +PTPIQ + IP VL   D+   A TG+GKTA+F LP+L 
Sbjct: 49  NFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQ 108

Query: 61  -----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113
                  L++   +      LIL PTRELA QVAD+ + Y  ++N  +    + GG+   
Sbjct: 109 QIHEDAPLDRRSGKGNYVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVN 168

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L  G D+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  I  L
Sbjct: 169 TQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKL 228

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKC 232
           +P  +QTLLFSAT  ++++ ++   L +P  IEV   S+ A T ++  F     +  +K 
Sbjct: 229 LPSKKQTLLFSATFPEQVKTLTHELLNDP--IEVQLQSANASTLVQRVF---EVEKGRKT 283

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           ALL  L+Q Q   +  +IF N K +  +L   L K+G      HG+  Q SR +IL +FK
Sbjct: 284 ALLAHLIQ-QHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFK 342

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G I +++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GR+G  G A +L+  E
Sbjct: 343 SGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRSGEVGLALSLIDHE 402

Query: 353 DIKHIDAIEK 362
           D  H   IEK
Sbjct: 403 DYHHFTIIEK 412


>gi|220904989|ref|YP_002480301.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869288|gb|ACL49623.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 595

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 143/360 (39%), Positives = 215/360 (59%), Gaps = 9/360 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS +++ AV D G+ +P+PIQ+  +P +L  +D  G AQTGTGKTA+F LP+L  
Sbjct: 5   FEELGLSRELLKAVEDMGFEEPSPIQVLAVPCLLAGNDAFGQAQTGTGKTAAFGLPILDK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R      + LIL PTRELA QVA+   K   +   + +  + GG P E Q + L +
Sbjct: 65  LTPERN----TQALILCPTRELAIQVAEELNKLAAHKRGVAILPIYGGQPIERQLRALAK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L ++   + V+DEAD MLDMGF   I+ I    P + Q +
Sbjct: 121 GVQVVVGTPGRVMDHLKRGTLRLSQASMAVLDEADEMLDMGFREDIEAILEQTPASCQRV 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++++S+ FL+ P+ + V     T   IE  +        +K   L +LL S
Sbjct: 181 LFSATVPPAIRELSKRFLREPEMLTVAQKMLTVPAIEQIYYEVRPH--QKMDALCRLLDS 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      ++FC+ K+    +   L+++G+   ++HGN+ Q  R +++  F+   + ++VA
Sbjct: 239 R-AFHKALVFCSTKRGADEVTTHLQQRGYQSDSLHGNLAQSQRDRVMQRFRAEGLDVLVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDAI 360
           +D+AARGLD+ DV  V N+D+P+  E Y+HRIGRTGRAGR G AFT V  +E  K  D I
Sbjct: 298 TDVAARGLDVDDVDAVINYDIPHDVEKYVHRIGRTGRAGRVGSAFTFVTMREHYKMRDII 357


>gi|255036249|ref|YP_003086870.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254949005|gb|ACT93705.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 446

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 152/374 (40%), Positives = 218/374 (58%), Gaps = 8/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L+  ++ A+ +AGY  PTPIQ K   +++   DVCGIAQTGTGKT +++LP L
Sbjct: 2   MTFEDLNLTKPLLKALSEAGYTTPTPIQHKVFSVMMSGKDVCGIAQTGTGKTFAYLLPTL 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +E   A+ R+P+ L+L PTREL  QV +   K      L V  + GG   + Q  +L 
Sbjct: 62  RQIE--YAKDRLPQLLVLVPTRELVVQVVEEVRKLAAYTTLQVVGVYGGGNIKVQMAELH 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GADV++ TPGR+ D    G L   +++ LVIDE D ML++GF   ++NI  L+P  RQ 
Sbjct: 120 EGADVVVATPGRLFDLAMNGSLKTKSVKKLVIDEVDEMLNLGFRTQLKNILDLLPQRRQN 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQLL 239
           LLFSAT+T E++ + + +  +P RIE     +  + IE    A Y   +  K  LL +LL
Sbjct: 180 LLFSATITQEVEALMKAYFNDPVRIEAAPVGTPLDNIEQQ--AYYVPNFYTKVNLLDKLL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF--SVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  + M   +IF   KK    L   LE  G+   +  IH N DQ  R   +  F  G  +
Sbjct: 238 EQHEEMNKVLIFVATKKLADQLYGQLE-LGYLDRIGVIHSNKDQNHRFNTIRQFHAGNYR 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L++A+D+ ARGLD+ +V HVFNFD+P   ENYIHRIGRTGRA R G A + +++ +    
Sbjct: 297 LLIATDIIARGLDVAEVSHVFNFDIPEIPENYIHRIGRTGRADRKGIAISFISEREKPFQ 356

Query: 358 DAIEKLIEKKVDWL 371
           + IE L++ ++  L
Sbjct: 357 EQIEALMDFEIPVL 370


>gi|239626754|ref|ZP_04669785.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239516900|gb|EEQ56766.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
           bacterium 1_7_47FAA]
          Length = 572

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 136/367 (37%), Positives = 222/367 (60%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L  +++ A+ + G+ + +PIQ + IP+ ++  D+ G AQTGTGKTA+F +P+L  
Sbjct: 6   FDELQLDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIPLL-- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLER 121
            +K   +V+  + +IL PTRELA QVA+   +  K  + T  L I GG     Q + L+ 
Sbjct: 64  -QKVDPKVKKLQAIILLPTRELAIQVAEEMRRLAKFMHGTKVLPIYGGQDIVKQIRSLKD 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH  R  + M+++  +V+DEAD ML+MGF+  ++ I S +P  RQTL
Sbjct: 123 GTQIVVGTPGRVMDHMRRKTVKMDHVHTVVLDEADEMLNMGFLEDMETILSQLPEERQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM   +  ++  F  +P  + V     T   +   +     +   K  ++ +LL  
Sbjct: 183 MFSATMPQAIADIARKFQDDPVTVRVIKKELTVPKVTQYYYEVKPK--NKVEVMCRLLDM 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  I+FCN K+ V  L  +L+ +G+    +HG++ Q  R +++ +F+ G   ++VA
Sbjct: 241 Y-APKLSIVFCNTKRQVDELVQALQGRGYFAEGLHGDLKQVQRDRVMGSFRNGRTDILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+DVP   E Y+HRIGRTGRAGR GKAF+LV  +++  +  I+
Sbjct: 300 TDVAARGIDVGDVEAVFNYDVPQDDEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRDIQ 359

Query: 362 KLIEKKV 368
           +  + K+
Sbjct: 360 RYCKTKI 366


>gi|158520071|ref|YP_001527941.1| DEAD/DEAH box helicase domain-containing protein [Desulfococcus
           oleovorans Hxd3]
 gi|158508897|gb|ABW65864.1| DEAD/DEAH box helicase domain protein [Desulfococcus oleovorans
           Hxd3]
          Length = 464

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 137/386 (35%), Positives = 225/386 (58%), Gaps = 10/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++ A+ D G+   TPIQ + +P  L   D  G AQTGTGKTA+F++ +LT 
Sbjct: 56  FHDMDLPDALMHAIYDLGFTYCTPIQAEILPSTLAGRDAFGRAQTGTGKTAAFLISILTH 115

Query: 63  LE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +         +   PR L+L PTREL  Q+ +  ++  ++  + +  + GG+ F+ Q  +
Sbjct: 116 MHNNPITAARKPGTPRALVLAPTRELVIQIGEEAQQLARHLPVNIVSVFGGMDFKQQQDR 175

Query: 119 LER-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           L R   D+++ TPGR+LD   R  +++  +EILVIDEADRMLDMGFIP ++ I    P  
Sbjct: 176 LTREPVDIIVATPGRLLDFSRRRAVMLKQVEILVIDEADRMLDMGFIPDVRKIIYATPQK 235

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT+T+ + +++  + ++P ++ +       ++++   V       +K ALL
Sbjct: 236 GNRQTLLFSATLTEAITRLASAWTRDPVQVAIEPEHVAVDSVDQ--VVYIVTSDRKLALL 293

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             ++  Q+ +   ++FCN+K  V  L   L + G     + G++ Q+ R + L +FK G 
Sbjct: 294 YNIIVQQN-LSRVLVFCNRKDAVSRLADRLTRYGIKCEILTGDVPQQKRSRRLEDFKSGK 352

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+ ARG+ + D+ HV NFD+P+  E+Y+HRIGRTGRAG  G + +   + D  
Sbjct: 353 IRVLVATDVMARGIHVEDMDHVVNFDLPHDPEDYVHRIGRTGRAGAVGTSISFADERDSF 412

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPP 381
           +I  IE  +E+ +  +  D + L  P
Sbjct: 413 YIPDIEDFMERPLPCIEPDSTWLELP 438


>gi|67527984|ref|XP_661837.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
 gi|74681080|sp|Q5B5E7|RRP3_EMENI RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|40740142|gb|EAA59332.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
 gi|259481158|tpe|CBF74430.1| TPA: ATP-dependent rRNA helicase rrp3 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5B5E7] [Aspergillus
           nidulans FGSC A4]
          Length = 465

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 141/370 (38%), Positives = 215/370 (58%), Gaps = 13/370 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG+  ++  A  + GY  PTPIQ + IPL L+  DV G+A+TG+GKTA+F LPML  
Sbjct: 48  FKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPML-- 105

Query: 63  LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +A +  P+TL   +L PTRELA Q++  FE  G    +  A+++GG+   AQ+  L
Sbjct: 106 ----QALMEAPQTLFGLVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIAL 161

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +++ TPGR+LDH    K   + N++ L IDEADR+LDM F   +  I  ++P TR
Sbjct: 162 GKKPHIIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTR 221

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            T LFSATM+ +++ +    L NP R+ V++   T  T++  ++     +  K   L  L
Sbjct: 222 HTYLFSATMSTKVESLQRASLSNPVRVSVSSKYQTVSTLQSSYICI--PHKHKNLYLVYL 279

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L ++   ++ IIF         +   L   GF    +HG + Q +R+  L  F+  +  +
Sbjct: 280 L-NEFAGQSAIIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFRSRSRDI 338

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIP V  VFNFD+P  ++ YIHR+GRT RAG+ G A + V + D++   
Sbjct: 339 LVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQYDVEVWL 398

Query: 359 AIEKLIEKKV 368
            IE  + KK+
Sbjct: 399 RIEHALSKKL 408


>gi|317177063|dbj|BAJ54852.1| ATP-dependent RNA helicase [Helicobacter pylori F16]
          Length = 492

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 82  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +   + T   I   F        ++   + +LL +Q
Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374

Query: 363 LIEKKVDWL 371
            I+ +++  
Sbjct: 375 EIDSEIELF 383


>gi|225390528|ref|ZP_03760252.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme
           DSM 15981]
 gi|225043410|gb|EEG53656.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme
           DSM 15981]
          Length = 595

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 223/369 (60%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L  +++ AV + G+ + +PIQ + IP+ ++  D+ G AQTGTGKTA+F +P+L
Sbjct: 31  MKFDTLQLDERILRAVTEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIPLL 90

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
              +K   +V+  + ++L PTRELA QVA+   + GK  + + V  + GG     Q + L
Sbjct: 91  ---QKVDPKVKKLQAIVLLPTRELAIQVAEEVRRLGKFMHGIKVLPIYGGQDIVKQIRSL 147

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  V+I TPGR++DH  R  + ++ +  +V+DEAD ML+MGF+  ++ I S +P  RQ
Sbjct: 148 KDGTQVIIGTPGRVMDHMRRKTVKLDYVNTVVLDEADEMLNMGFLEDMETILSQLPEERQ 207

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSATM   + +++  F + P  + V     T   +   +     +   K  ++ +LL
Sbjct: 208 TLMFSATMPPAIAEIARKFQKEPVTVRVVKKELTVPKVTQYYYEVKPK--NKVEVMCRLL 265

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  I+FCN KK V  L  +L+ +G+    +HG++ Q  R +++++F+ G   ++
Sbjct: 266 DLY-APKLSIVFCNTKKQVDELVQALQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDIL 324

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR GKAF+LV   ++  +  
Sbjct: 325 VATDVAARGIDVGDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVVGREVYKLRD 384

Query: 360 IEKLIEKKV 368
           I++  + ++
Sbjct: 385 IQRYCKTRI 393


>gi|322507406|gb|ADX02860.1| rhlB [Acinetobacter baumannii 1656-2]
 gi|323518696|gb|ADX93077.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 389

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 143/374 (38%), Positives = 223/374 (59%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++  A+   G+ + TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 11  FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 70

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     ++ R R   PR LIL PTRELA Q+  + +   K  NL +  L+GG+ F+ Q K
Sbjct: 71  LLNNPVQEQRFRGE-PRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKK 129

Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +L+    D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P 
Sbjct: 130 QLDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPR 189

Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTL+FSAT + ++  ++  +L  P  +E+     T   +E        Q   K  L
Sbjct: 190 KEQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQ--DKYRL 247

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ +L+ ++ +   +IF N++  V  L   L+K G+ V  + G I Q  R+K+L  FK+G
Sbjct: 248 LQDILR-EEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQG 306

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +M+A+D+A RG+ +  V HV NF +P ++++Y+HRIGRTGRAG  G + + ++++D 
Sbjct: 307 KHNIMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDA 366

Query: 355 KHIDAIEKLIEKKV 368
            ++  IEK I KK+
Sbjct: 367 FYLPEIEKAIGKKL 380


>gi|289678220|ref|ZP_06499110.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. syringae
           FF5]
 gi|330975704|gb|EGH75770.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 483

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 96  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 155

Query: 63  LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L +        +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 156 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 215

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 216 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 275

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T+++  +++ +  +P  +E+ + +  ++ +E    A     + K  LL
Sbjct: 276 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 333

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 334 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 392

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 393 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 452

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 453 QLPAIEEKLGRKI 465


>gi|149910882|ref|ZP_01899514.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
 gi|149806036|gb|EDM66019.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
          Length = 397

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 137/369 (37%), Positives = 215/369 (58%), Gaps = 5/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L   ++  V   GY +PTPIQ + IP ++  +D+ GIAQTGTGKTA+F LP++ 
Sbjct: 3   EFKEFSLLESIIDRVSLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIIN 62

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              + +  +  +  R+LIL PTRELA+Q+  N + Y     L   ++ GG+  + Q   +
Sbjct: 63  NFGRNKIDINAKSTRSLILTPTRELASQIMQNIDDYADGLGLKTKVVYGGVGRQNQVDSI 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD      +    +E+ V+DEAD MLDMGF   +Q I S +P  RQ
Sbjct: 123 ALGLDILVATPGRLLDLIKTDDINFKALEVFVLDEADTMLDMGFFKDVQRIISKLPKNRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E++ +++  L +P +I++   + T E I       + + S K  LL  +L
Sbjct: 183 TLLFSATMPAEIEILADAILTDPTKIQITAETVTIERINQSVY--HLEKSNKVPLLLNIL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +   K  +IFC  K     +  +LE+   +  ++H    Q  R + L NFK+  + ++
Sbjct: 241 E-KSHYKKVLIFCKTKPGADIIVEALEEASITAASLHSGKTQAVREEALQNFKDSNLSVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ ++  V N+++P    NYIHRIGRT RAG+ G A +   + DI  +++
Sbjct: 300 VATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGIAISFAVENDITLLNS 359

Query: 360 IEKLIEKKV 368
           IEK I K +
Sbjct: 360 IEKSIGKAI 368


>gi|27364381|ref|NP_759909.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus CMCP6]
 gi|32363316|sp|Q8DDN6|RHLB_VIBVU RecName: Full=ATP-dependent RNA helicase rhlB
 gi|27360500|gb|AAO09436.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus CMCP6]
          Length = 435

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 148/383 (38%), Positives = 225/383 (58%), Gaps = 11/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FADLGL+P+VV  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADLGLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            + T   +GR   + PR +I+ PTRELA Q+ ++ E    +  +  AL  GG  ++ Q  
Sbjct: 71  LLTTPAHEGRQPTQ-PRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLT 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G DVLI T GRI+D + +    +NNI+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLQGGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPAP 189

Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
           ++ L  LFSAT++  +Q+++   + NP+ + V     T   I+      Y     K ALL
Sbjct: 190 QERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELF--YPSNEDKMALL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R KIL  F +G+
Sbjct: 248 QTLIE-EEWPDRAIIFANTKYKCESIWAHLAADGHRVGLLTGDVPQKKREKILEQFTQGS 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + L+VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   ++   
Sbjct: 307 VDLLVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAI 366

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
           ++ AIE+ IE  +   + D S+L
Sbjct: 367 NLPAIEEYIEHTIPVSDYDSSAL 389


>gi|315924965|ref|ZP_07921182.1| DEAD/DEAH family ATP-dependent RNA helicase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621864|gb|EFV01828.1| DEAD/DEAH family ATP-dependent RNA helicase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 550

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 142/370 (38%), Positives = 217/370 (58%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L +  +++ AV   G+ + T IQ + IP +L   D+ G +QTGTGKT +F +P +
Sbjct: 6   MKFNTLAVDQRILDAVARMGFAEMTAIQAQAIPRLLAGKDIIGRSQTGTGKTLAFAIPAV 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
             ++    R   P+ LIL PTRELA QVA  FEK    +  + +A + GG     Q +  
Sbjct: 66  QKVDPAAKR---PQVLILLPTRELALQVAGEFEKLLTCSEGVAIAAVFGGASMPKQIRAF 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGRI+DH  RG L  + + ++V+DEAD MLDMGF   I+ I   V    Q
Sbjct: 123 KSGAQIVVGTPGRIMDHLRRGTLRFDAMRMVVLDEADEMLDMGFREDIEAILDRVDHPVQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM   + K++E + ++P+ + +   +  A  IE  + +      +K   L +LL
Sbjct: 183 TALFSATMPAPITKMAELYQRDPETVAIAPKNMVAAGIEERYYSIVD--GQKFEALTRLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  +IFCN KK V  L ++L+ +G+S   IHG++ Q +R+ +L  F EG + ++
Sbjct: 241 AVYRP-RRALIFCNTKKYVDELTNALQDRGYSADKIHGDMRQEARLAVLRRFAEGRLAIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  VFN+DVP+  E Y+HRIGRTGRAG+ G + TL  + D   +  
Sbjct: 300 VATDVAARGIDVDDVDIVFNYDVPDNEEYYVHRIGRTGRAGKSGLSLTLARRRDQYRLKK 359

Query: 360 IEKLIEKKVD 369
           I +   K ++
Sbjct: 360 ITRYTRKPIE 369


>gi|90408655|ref|ZP_01216807.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
 gi|90310231|gb|EAS38364.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
          Length = 418

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 154/405 (38%), Positives = 239/405 (59%), Gaps = 14/405 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF---VLPM 59
           F DL L   ++ A+ + G+   TPIQ  ++P+ L   D+ G AQTGTGKT +F   V   
Sbjct: 11  FIDLPLQESLLSALTELGFEYCTPIQAISLPITLLGKDIAGQAQTGTGKTLAFLPAVFNH 70

Query: 60  LTILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L I ++   R +  PR +IL PTRELA Q+  +   + K+ NL + L  GG   E Q  K
Sbjct: 71  LLINKEPENRSKDQPRAIILAPTRELAIQIHKDAMVFAKHTNLRLGLAYGGEKVEIQRNK 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
           LE+G D+LI T GRI+D   +G + +N+I+ +V+DEADRM D+GFI  I+ +   +P + 
Sbjct: 131 LEKGVDILIGTTGRIIDFVKQGTINLNSIQSVVLDEADRMFDLGFIKDIRYLFRRMPESN 190

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
            R  +LFSAT++ ++Q+++   + +P+ I++     T+E I E  F   Y   ++K  LL
Sbjct: 191 LRLNMLFSATLSHKVQELAFEHMNSPEHIQIEPERMTSENISEELF---YPSNAEKMHLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++ ++  +  I+F N K     +   L   G     + G++ Q+ R KILS F +G 
Sbjct: 248 LTLME-EEWPEKAIVFANTKHTCEKVWGYLAGDGLRAGLLTGDVPQKKREKILSQFTDGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG+ G+A TL  ++   
Sbjct: 307 IDVLVATDVAARGLHIPKVSHVFNFDLPDDCEDYVHRIGRTGRAGQKGQAITLACEKYAF 366

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ---HNHARKNN 397
           ++  IE  I+  +     D  +L   L K+ + +   HN+ RK++
Sbjct: 367 NLPEIEAFIKHSIPVSEFDRDALVQTLPKMIVTKYKAHNNRRKDS 411


>gi|322806278|emb|CBZ03846.1| ATP-dependent RNA helicase BA2475 [Clostridium botulinum H04402
           065]
          Length = 376

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 148/366 (40%), Positives = 219/366 (59%), Gaps = 6/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++  +     ++PTPIQ ++I L+   +DV   AQTGTGKT +F+LPM   
Sbjct: 4   FEELGLSDSIIDVLKKQRIIEPTPIQEESIMLIKSGNDVIAEAQTGTGKTLAFLLPMF-- 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E     +   + LI+ PTRELA Q+ +   K  +  +L +    GG    +Q KKL+  
Sbjct: 62  -ENISPDIDAIQGLIITPTRELAIQITEEAMKLKEAKDLNILATYGGKDIGSQIKKLKNN 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++I TPGR+LDH NR  L   +++ LV+DEAD ML MGF   +++I    P  RQTL 
Sbjct: 121 IHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLC 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++K++   +++PK I +     T + I+   + T  +  +K   L ++L  +
Sbjct: 181 FSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNIKQVLIETTDR--RKQEDLCKILDEE 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     IIFC  K+ V  L  +L K+G++   +HG+I Q  R +I+ +FK   IQ ++A+
Sbjct: 239 NPFM-AIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HVFN+D+P  AE+YIHRIGRTGRAG  G  F  VA +D + +  IEK
Sbjct: 298 DVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLGMIEK 357

Query: 363 LIEKKV 368
            I+ K+
Sbjct: 358 EIKFKI 363


>gi|210134447|ref|YP_002300886.1| ATP-dependent RNA helicase [Helicobacter pylori P12]
 gi|210132415|gb|ACJ07406.1| ATP-dependent RNA helicase [Helicobacter pylori P12]
          Length = 492

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 213/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 82  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +   + T   I   F        ++   +  LL +Q
Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMHLLDTQ 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374

Query: 363 LIEKKVDWL 371
            I+ +++  
Sbjct: 375 EIDSEIELF 383


>gi|94266535|ref|ZP_01290222.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93452836|gb|EAT03359.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 524

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 145/389 (37%), Positives = 230/389 (59%), Gaps = 19/389 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+V+ A+   G+   TPIQ + +P  L  HD  G AQTGTGK+A+F++ ++T 
Sbjct: 101 FHDFDLAPEVMRAIQALGFEYCTPIQAEILPPTLAGHDAFGKAQTGTGKSAAFLISIITR 160

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L + RA     +  P+ LIL PTRELA Q+  + E   +   L    + GG+ +E Q ++
Sbjct: 161 LLRQRADQPRALGFPQALILAPTRELAIQIHQDAEGLARFSGLRCVAVYGGVDYEKQRQR 220

Query: 119 LER-GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP- 175
            E+   D+LI TPGR+LD F R K+L +  +++LVIDEADR+LDMGFIP ++ I    P 
Sbjct: 221 FEQEPVDLLIATPGRLLD-FARQKVLSLKEVQVLVIDEADRLLDMGFIPDVRRIIQQTPE 279

Query: 176 -FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTL FSAT+T ++  +++ +   P  +E+      AE++E   +   A   +K  +
Sbjct: 280 KGKRQTLFFSATLTAQISSLADQWTHKPVTVEIEPEQVAAESVEQ--LVYLATREEKFTI 337

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L+  ++ ++  I+FCN++     +   L +   S   + G + Q+ RM  L NFK G
Sbjct: 338 LYNLIVGRE-LERVIVFCNRRDVTRRVRDRLYRHDISCAMLSGEVGQQQRMNTLDNFKAG 396

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+A RGL +  + HV N+++P  AE+Y+HRIGRTGRAG+ G + +   +++ 
Sbjct: 397 KIRILVATDVAGRGLHVEGISHVVNYNLPEDAEDYVHRIGRTGRAGQSGTSVSFADEDES 456

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
            ++ AIE       ++L   LS + PP E
Sbjct: 457 FYLPAIE-------EYLGNKLSCVYPPEE 478


>gi|330819324|ref|YP_004348186.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3]
 gi|327371319|gb|AEA62674.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3]
          Length = 465

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 150/394 (38%), Positives = 219/394 (55%), Gaps = 18/394 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L LSP ++  +   GY + TPIQ  ++PL L   D+   A+TG+GKTA+F L +L+ 
Sbjct: 10  FSELALSPAMLANLEQLGYTEMTPIQAASLPLALAGQDLIAQAKTGSGKTAAFSLALLSR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    +IL PTRELA QVA    +  +   N+ V  L GG P   Q   LE 
Sbjct: 70  LDARRFDVQ---AMILCPTRELADQVAQEIRRLARAEENIKVLTLCGGTPMRPQAASLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  RG L +  +  LV+DEADRMLDMGF   I  +    P  R TL
Sbjct: 127 GAHIVVGTPGRIMDHLERGTLALGALNTLVLDEADRMLDMGFFDDIATVARQCPTERLTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K+S  FL++PK I++       +  +  +  T     ++   + QLL  
Sbjct: 187 LFSATYPEGITKLSRQFLRDPKEIKLAEQHDARKIRQRFYEVT---EDERLHAVGQLLNH 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 244 YRPAST-IAFCNTKQQCRDLLDVLSAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L +  ++  +  IE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGGIE 362

Query: 362 KLIEKKVDWLNGDLSSLN--------PPLEKIDI 387
           +   ++V+W    L+SL         PP+E + I
Sbjct: 363 QAQGREVEW--QPLASLTPASNEPLLPPMETLQI 394


>gi|282852614|ref|ZP_06261956.1| ATP-dependent RNA helicase DeaD family protein [Lactobacillus
           gasseri 224-1]
 gi|282556356|gb|EFB61976.1| ATP-dependent RNA helicase DeaD family protein [Lactobacillus
           gasseri 224-1]
          Length = 452

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 136/355 (38%), Positives = 217/355 (61%), Gaps = 15/355 (4%)

Query: 34  LVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFE 93
           +VL+  DV G AQTGTGKTA+F LP+L  L+K    ++    +++EPTRELA Q  +   
Sbjct: 1   MVLEGKDVIGQAQTGTGKTAAFGLPILQNLDKQHDSIQ---AIVIEPTRELAIQTQEELF 57

Query: 94  KYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVID 153
           + G++    V ++ GG     Q + L++   +L+ TPGR+LDH  RG + ++ ++ +V+D
Sbjct: 58  RLGRDEKARVQVVYGGADIRRQIRALKQTPAILVGTPGRLLDHLKRGTIDISKVKTIVLD 117

Query: 154 EADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
           EAD MLDMGFI  I++I +      QTLLFSATM   + ++ E F+ +P+ +++     T
Sbjct: 118 EADEMLDMGFIQDIESILNYASSKHQTLLFSATMPKPILRIGEKFMHDPEIVKIKGKELT 177

Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
           A  I+  FV   A+ ++K  +L +L+  Q+     +IF   K+ V  L   L+ +G++  
Sbjct: 178 ANLIDQYFVR--AKENEKFDILCRLIDVQNP-DLAVIFGRTKRRVDELTRGLQARGYNAA 234

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            IHG++ Q  RM +L  F++G + ++VA+D+AARGLDI  V HV+N+D+P   ++Y+HRI
Sbjct: 235 GIHGDLSQAKRMSVLKRFRKGKLDILVATDVAARGLDISGVSHVYNYDIPQDPDSYVHRI 294

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV---------DWLNGDLSSLN 379
           GRTGRAG++G + T V   +I ++  IE+L  KK+         +   G LS+ N
Sbjct: 295 GRTGRAGQNGMSVTFVTPNEIGYMRTIEQLTHKKMMLLKPPTDEEAFKGQLSAAN 349


>gi|225016981|ref|ZP_03706173.1| hypothetical protein CLOSTMETH_00902 [Clostridium methylpentosum
           DSM 5476]
 gi|224950247|gb|EEG31456.1| hypothetical protein CLOSTMETH_00902 [Clostridium methylpentosum
           DSM 5476]
          Length = 563

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 215/349 (61%), Gaps = 5/349 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L LS +   A+   G+   T IQ ++IPL+   +DV G +QTGTGKT +F +P + +
Sbjct: 6   FAQLNLSDETGQAIEAMGFDNATDIQAQSIPLIRAGYDVIGRSQTGTGKTVAFGVPAVEL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL-LIGGIPFEAQNKKLER 121
           ++    R +  + LIL PTRELA Q     EK  K      A+ + GG P + Q  +L+R
Sbjct: 66  IDTEELRNKT-QVLILCPTRELAVQACSEIEKIAKYKRGVRAVDIYGGAPMDRQIMRLKR 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA++++ TPGR++DH  R  L +++++++++DEAD ML+MGF   ++ I    P  RQT+
Sbjct: 125 GANIVVGTPGRVMDHLRRRTLKLDHLKMIILDEADEMLNMGFREDVETILKQTPDERQTI 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +  +++ + ++P+ IE+N    T + IE  F        +K   L  +LQ 
Sbjct: 185 LFSATMPPAILALTKQYQKDPQLIEINRKQVTLDNIEQQFYEV--PMGRKMDALGIILQY 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D   + IIFCN K+ V  +   L++ G+S   +HG++ Q  R K++ +FK G  +++VA
Sbjct: 243 HDPALS-IIFCNTKRMVDEVTAFLDRSGYSAEGLHGDMKQSQRTKVMDSFKRGRTKILVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           +D+AARG+D+ +V +V N+DVP   E Y+HRIGRTGRAG+ GKA T+ +
Sbjct: 302 TDVAARGIDVNNVDYVINYDVPQNQEYYVHRIGRTGRAGKEGKAVTICS 350


>gi|303231103|ref|ZP_07317843.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514234|gb|EFL56236.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 432

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 135/363 (37%), Positives = 219/363 (60%), Gaps = 6/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+  +++  +   G  +PTPIQ ++IP+V + +D+   AQTGTGKT +F+LP   I
Sbjct: 4   FKSLGVCDELISTLQKQGIKEPTPIQEQSIPIVFKGNDIIAKAQTGTGKTLAFLLP---I 60

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++    V   + LI+ PTREL  Q++D  +  G   ++ +  LIGG   E+Q ++L R 
Sbjct: 61  LQRIHTDVHQEQVLIIAPTRELIKQISDEAKVLGAVLDVDILPLIGGKTIESQLQQLGRR 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+LDH  RG L +++I  +V+DEAD+ML MGF+P I+N+       RQ LL
Sbjct: 121 PHVILGTPGRLLDHAKRGSLHLDSIRRVVLDEADQMLHMGFLPDIENLIGQTDANRQLLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ D+++ +++ ++  P  +       T ++I+        +   K   L +++Q +
Sbjct: 181 FSATIPDKIRNLAKAYMTKPVSVTAEGKHITLDSIDQRVYMMNPE--DKTPRLIKMIQ-E 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D     I+FCN+++  + L + L   G ++  +HG++ Q  R +IL +F +   Q++VA+
Sbjct: 238 DNPYLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HV+N+DVP+  + YIHRIGRTGRAG  G A T     D   +  IE+
Sbjct: 298 DIAARGIDIEGITHVYNYDVPHDVDYYIHRIGRTGRAGNSGIAVTFATPADESWLRRIER 357

Query: 363 LIE 365
            I+
Sbjct: 358 AIQ 360


>gi|227499384|ref|ZP_03929495.1| ATP-dependent RNA helicase [Anaerococcus tetradius ATCC 35098]
 gi|227218446|gb|EEI83689.1| ATP-dependent RNA helicase [Anaerococcus tetradius ATCC 35098]
          Length = 553

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 153/417 (36%), Positives = 233/417 (55%), Gaps = 25/417 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  +   ++ A+ D GY  P+PIQ +TI  +L   DV G AQTGTGKTA+F +P++
Sbjct: 15  MKFNEFNIGEDILQAIDDMGYTNPSPIQEETIQYLLDGRDVIGQAQTGTGKTAAFAIPLV 74

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
             +E       + ++LIL PTREL  QVA   EK  K   ++ V  L GG     Q K L
Sbjct: 75  ENVEAND----ITQSLILCPTRELCMQVAREVEKLTKYKKDIKVLALYGGTQIVKQIKAL 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+GA++++ TPGR++D   R  L ++ ++ +V+DEAD M DMGF   ++ I       RQ
Sbjct: 131 EKGAEIVVGTPGRVIDLMKRRVLKLDMLKNVVLDEADEMFDMGFRDDMKVILDATNPQRQ 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T  FSATM  E  + S+ +  NP++I +     T E I+  ++    + + K   L +LL
Sbjct: 191 TCFFSATMGKEFAEFSKLYQNNPQKIVIKADEVTVEKIDQYYIKL--KEAMKEETLTRLL 248

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +  K  I+FCN K+ V  L   L K+ + V  +HG++ Q +R +++  F+  TIQ++
Sbjct: 249 EINNP-KLAIVFCNTKRKVDKLVEELTKKSYLVDGLHGDLKQSARDQVMKKFRNKTIQIL 307

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI DV  V N+D+P   E Y+HRIGRT RAG+ G +++L+A  D   + A
Sbjct: 308 IATDVAARGLDIDDVDLVINYDLPQLDEYYVHRIGRTARAGKSGVSYSLIAGRDRDRLRA 367

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP------QKSTGFDRRK 410
           IEK       +   D+  +  P     + Q +   +NN I       + S   DR K
Sbjct: 368 IEK-------YTKADIKEIPIP----SLIQMDRKSENNLIENLSEKLEASPKLDREK 413


>gi|148379972|ref|YP_001254513.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153932857|ref|YP_001384271.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936987|ref|YP_001387810.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           Hall]
 gi|148289456|emb|CAL83553.1| putative ATP-dependent RNA helicase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152928901|gb|ABS34401.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932901|gb|ABS38400.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. Hall]
          Length = 376

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 148/366 (40%), Positives = 219/366 (59%), Gaps = 6/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++  +     ++PTPIQ ++I L+   +DV   AQTGTGKT +F+LPM   
Sbjct: 4   FEELGLSDSIIDVLKKQRIIEPTPIQEESIMLIKSGNDVIAEAQTGTGKTLAFLLPMF-- 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E     +   + LI+ PTRELA Q+ +   K  +  +L +    GG    +Q KKL+  
Sbjct: 62  -ENISPDIDAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLKNN 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++I TPGR+LDH NR  L   +++ LV+DEAD ML MGF   +++I    P  RQTL 
Sbjct: 121 IHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLC 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++K++   +++PK I +     T + I+   + T  +  +K   L ++L  +
Sbjct: 181 FSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNIKQVLIETTDR--RKQEDLCKILDEE 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     IIFC  K+ V  L  +L K+G++   +HG+I Q  R +I+ +FK   IQ ++A+
Sbjct: 239 NPFM-AIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HVFN+D+P  AE+YIHRIGRTGRAG  G  F  VA +D + +  IEK
Sbjct: 298 DVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLGMIEK 357

Query: 363 LIEKKV 368
            I+ K+
Sbjct: 358 EIKFKI 363


>gi|153001334|ref|YP_001367015.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151365952|gb|ABS08952.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 427

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 142/362 (39%), Positives = 205/362 (56%), Gaps = 10/362 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LG+   ++  + +  YV PTP+Q  TIP VL   DV   A TG+GKTA+F +P+L  L +
Sbjct: 14  LGIIAPLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVE 73

Query: 66  GRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKLE 120
            +   +     R L+L PTRELA QVAD+F  Y  + N  L +    GG+   AQ + L 
Sbjct: 74  AKTDDKTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQSLR 133

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GADVL+ TPGR+LD  +   + +N +  LV+DEADRML +GF   +  +   +P  +QT
Sbjct: 134 AGADVLVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQT 193

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  +E+++++   L  P  +E    S    TI    +        K ALL  L++
Sbjct: 194 LLFSATFPEEVRELTAKLLNAP--LEYQLQSEQESTIHQRVITV--NRPMKTALLAHLIK 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     +IF + K    +L   L K+G S    HG+  Q +R ++L  FK G I +++
Sbjct: 250 EHE-WSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLI 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V NFD+P    +Y+HRIGR+GRAG  G A TL++ ED  H   I
Sbjct: 309 ATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGVI 368

Query: 361 EK 362
           EK
Sbjct: 369 EK 370


>gi|320157764|ref|YP_004190143.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus MO6-24/O]
 gi|319933076|gb|ADV87940.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus MO6-24/O]
          Length = 435

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 148/383 (38%), Positives = 225/383 (58%), Gaps = 11/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FADLGL+P+VV  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADLGLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            + T   +GR   + PR +I+ PTRELA Q+ ++ E    +  +  AL  GG  ++ Q  
Sbjct: 71  LLTTPAHEGRQPTQ-PRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G DVLI T GRI+D + +    +NNI+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLQGGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPAP 189

Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
           ++ L  LFSAT++  +Q+++   + NP+ + V     T   I+      Y     K ALL
Sbjct: 190 QERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELF--YPSNEDKMALL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R KIL  F +G+
Sbjct: 248 QTLIE-EEWPDRAIIFANTKYKCESIWAHLAADGHRVGLLTGDVPQKKREKILEQFTQGS 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + L+VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   ++   
Sbjct: 307 VDLLVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAI 366

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
           ++ AIE+ IE  +   + D S+L
Sbjct: 367 NLPAIEEYIEHTIPVSDYDSSAL 389


>gi|226953843|ref|ZP_03824307.1| ATP-dependent RNA helicase [Acinetobacter sp. ATCC 27244]
 gi|226835434|gb|EEH67817.1| ATP-dependent RNA helicase [Acinetobacter sp. ATCC 27244]
          Length = 647

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 141/378 (37%), Positives = 227/378 (60%), Gaps = 15/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  L   +  A+   G+  PTP+Q + IP  L+  D+   +QTG+GKTA+F+LP L  
Sbjct: 5   FAEFSLHETLQQALEGLGFTTPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64

Query: 63  L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111
           L          E+ +A V  P  L++ PTRELA QV+ +   + ++   + +A ++GG+P
Sbjct: 65  LAGQETFVPFKERMKA-VTQPTILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           F  Q ++L +GA V++ TPGR+LD  NR +L ++ +E L++DEADRMLD+GF   ++ I 
Sbjct: 124 FGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVESLIVDEADRMLDLGFAEDLEAIG 182

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            L     QTL+FSAT  D + +++E  + +P+RI + T  ST   +      T   +  K
Sbjct: 183 ELAANRNQTLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTDVTQTLHWTDG-FEHK 241

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL   L S +++   ++F + +++   L   L + G SV A+HG + Q  R + L + 
Sbjct: 242 KKLLTHWL-SDESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 300

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL   
Sbjct: 301 REGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGQAVTLATY 360

Query: 352 EDIKHIDAIEKLIEKKVD 369
            +   I A+E  ++ +++
Sbjct: 361 RERGKIRALEDYLDARLN 378


>gi|317013693|gb|ADU81129.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori Gambia94/24]
          Length = 491

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 215/369 (58%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 82  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +   + T   I   F        ++   + +LL +Q
Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNADITQRFYVINEH--ERAEAIMRLLDTQ 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K+ I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 256 APEKS-IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374

Query: 363 LIEKKVDWL 371
            I+ +++  
Sbjct: 375 EIDSEIELF 383


>gi|157826077|ref|YP_001493797.1| ATP-dependent RNA helicase RhlE [Rickettsia akari str. Hartford]
 gi|157800035|gb|ABV75289.1| ATP-dependent RNA helicase RhlE [Rickettsia akari str. Hartford]
          Length = 410

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 140/364 (38%), Positives = 214/364 (58%), Gaps = 13/364 (3%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +  LS +++ A+      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP++    
Sbjct: 3   NFNLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLIDSFI 62

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           K +        LIL PTRELA Q+     K   +Y +  A+LIGG P   Q  +L++   
Sbjct: 63  KNKTTA-----LILVPTRELATQIHSTLNKVTTSYKMNSAVLIGGEPMHKQFMQLKKNPK 117

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
            +I TPGRI+DH NRG L ++ I I V+DE DRMLDMG    ++ I   +P  RQ L+FS
Sbjct: 118 AIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFS 177

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQSQ 242
           ATM   +  VS+ +L NP RI V   +  A  I  E   V+   ++S+   L +QL   +
Sbjct: 178 ATMPKHIIVVSQKYLNNPVRITVGAANKAAAEIKQESIHVSDKEKFSE---LTKQLGNRE 234

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            ++   IIF   K++   L   L+ +     AIHG++ QR R +++ +F++   ++MVA+
Sbjct: 235 GSV---IIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQRQRERVILSFRKSNHRIMVAT 291

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +DI    AI++
Sbjct: 292 DVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDIIRWRAIDR 351

Query: 363 LIEK 366
           L+ K
Sbjct: 352 LVNK 355


>gi|323524408|ref|YP_004226561.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323381410|gb|ADX53501.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
          Length = 467

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 147/392 (37%), Positives = 219/392 (55%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L    +  +   GYV+ TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 11  FNQLPLPAAALANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+   AR    + ++L PTRELA QV     +  +   N+ V  L GG P   Q   LE 
Sbjct: 71  LD---ARKFAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  RG L + ++  LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 128 GAHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVRQCPKERQTL 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K+S+ FL+NPK +++       +  +  +  +  +      LL    + 
Sbjct: 188 LFSATYPEGIVKLSQQFLRNPKEVKLAERHDDTKIRQRFYEVSEDERLHAVGLLLNHYRP 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+     FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 248 VSTLA----FCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  +  IE
Sbjct: 304 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGGIE 363

Query: 362 KLIEKKVDWLN-GDLSS-----LNPPLEKIDI 387
           +  +++V+W    +L+S     L PP+E + I
Sbjct: 364 QAQKREVEWHKLSELTSTSNEPLLPPMETLQI 395


>gi|312131519|ref|YP_003998859.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311908065|gb|ADQ18506.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 408

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 133/361 (36%), Positives = 220/361 (60%), Gaps = 4/361 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  + P++  A+ D GY KPT IQ K +P VL   D+ GIAQTGTGKTA+F +P+L
Sbjct: 1   MKFENYRILPEIKRAIADLGYKKPTDIQYKVLPKVLAGEDIMGIAQTGTGKTAAFAIPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L   + + +  R L++ PT ELA Q+AD F+   KN  L +  L G    E Q K L+
Sbjct: 61  HLLASEK-KSKSLRCLVMVPTHELAQQIADVFKSLAKNTRLKIMALYGSTDQEPQIKALQ 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVL+ TPGR+ D   +G L + +I+ L++DEADRMLD+GF   I ++   +P   QT
Sbjct: 120 KGVDVLVTTPGRMFDLQAQGHLSLEDIKFLILDEADRMLDLGFYQDIIDVKKRIPKRHQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+ ++++K++ + ++N  RI+++     ++ I+H  V    +   K   L++++ 
Sbjct: 180 LFFSATLDEKIKKLAYSTVKNAIRIQISPDDPVSKNIDHSVVMVSME--DKRFFLERMI- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++  +  I+F   K     +  ++ +       +H +     R   L +FK+G   +++
Sbjct: 237 TENPQQKIIVFVRTKVRAERVAAAMARVNIKTVTLHSDKSHIERKAALESFKKGETWVLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D++ARG+DIP V +V N+D+P+ AENY+HRIGRTGR  + GKA +  + E++  +++I
Sbjct: 297 ATDVSARGVDIPLVEYVINYDLPDVAENYVHRIGRTGRGTQKGKAVSFCSDEELPLLESI 356

Query: 361 E 361
           E
Sbjct: 357 E 357


>gi|303229600|ref|ZP_07316388.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302515725|gb|EFL57679.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 432

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 135/363 (37%), Positives = 219/363 (60%), Gaps = 6/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+  +++  +   G  +PTPIQ ++IP+V + +D+   AQTGTGKT +F+LP   I
Sbjct: 4   FKSLGVCDELISTLQKQGIKEPTPIQEQSIPIVFKGNDIIAKAQTGTGKTLAFLLP---I 60

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++    V   + LI+ PTREL  Q++D  +  G   ++ +  LIGG   E+Q ++L R 
Sbjct: 61  LQRIHTDVHQEQVLIIAPTRELIKQISDEAKVLGAVLDVDILPLIGGKTIESQLQQLGRR 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+LDH  RG L +++I  +V+DEAD+ML MGF+P I+N+       RQ LL
Sbjct: 121 PHVILGTPGRLLDHAKRGSLHLDSIRRVVLDEADQMLHMGFLPDIENLIGQTDANRQLLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ D+++ +++ ++  P  +       T ++I+        +   K   L +++Q +
Sbjct: 181 FSATIPDKIRNLAKAYMTKPVSVTAEGKHITLDSIDQRVYMMNPE--DKTPRLIKMIQ-E 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D     I+FCN+++  + L + L   G ++  +HG++ Q  R +IL +F +   Q++VA+
Sbjct: 238 DNPYLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HV+N+DVP+  + YIHRIGRTGRAG  G A T     D   +  IE+
Sbjct: 298 DIAARGIDIEGITHVYNYDVPHDVDYYIHRIGRTGRAGNSGIAVTFATPADESWLRRIER 357

Query: 363 LIE 365
            I+
Sbjct: 358 AIQ 360


>gi|262370602|ref|ZP_06063927.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262314402|gb|EEY95444.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 640

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 143/380 (37%), Positives = 228/380 (60%), Gaps = 19/380 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP L  
Sbjct: 5   FADFPLHESLQQALQSLGFTAPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64

Query: 63  L----------EKGRARVRMPRTLILEPTRELAAQVADN---FEKYGKNYNLTVALLIGG 109
           L          E+ +A +  P  L+L PTRELA QV+ +   F ++ K     +A ++GG
Sbjct: 65  LAAQETFVPFKERMKA-ITQPNILVLCPTRELAQQVSQDAIGFVRHMKGAR--IAAIMGG 121

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +PF  Q ++L +GA V++ TPGR+LD  NR ++ ++ ++ L++DEADRMLD+GF   ++ 
Sbjct: 122 MPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEADRMLDLGFSEDLEA 180

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I+ L    +QTL+FSAT    +  ++E  + +P+RI + T  ST   I      T   + 
Sbjct: 181 ISDLAANRKQTLMFSATFAGRIITLAERMMNDPQRIAIETGHSTNTDITQTLHWTDG-FE 239

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            K  LL   L ++D +   ++F + +++   L   L + G SV A+HG + Q  R + L 
Sbjct: 240 HKKKLLTHWLSAED-VDQAVVFASTQEDTDMLAEELAEAGLSVVALHGAMPQTVRNRRLR 298

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           + +EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR GKA TL 
Sbjct: 299 SIREGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGKAITLA 358

Query: 350 AKEDIKHIDAIEKLIEKKVD 369
              +   I A+E  ++ +++
Sbjct: 359 TYRERGKIRALEDFLDARLN 378


>gi|330811536|ref|YP_004355998.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379644|gb|AEA70994.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 487

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 140/374 (37%), Positives = 223/374 (59%), Gaps = 10/374 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  L+P+++ A+ D G+   TPIQ + +   L   D  G AQTGTGKTA+F++ ++T 
Sbjct: 100 FHDFKLAPELMHAIQDLGFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLISIITQ 159

Query: 62  ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L+    + R    PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K 
Sbjct: 160 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKH 219

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           LE R  D+L+ TPGR+LD   RG + ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 220 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 279

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T+++  +++ +  +P  +E+   +  +E +E    A     + K  LL
Sbjct: 280 SERQTLLFSATFTEDVMNLAKQWTTDPAIVEIEAENVASENVEQHIYAVAG--ADKYKLL 337

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 338 YNLV-NDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 396

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 397 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSY 456

Query: 356 HIDAIEKLIEKKVD 369
            + +IE L+ KK++
Sbjct: 457 QLPSIEALLGKKIN 470


>gi|169633001|ref|YP_001706737.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii SDF]
 gi|169151793|emb|CAP00614.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter baumannii]
          Length = 383

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 143/374 (38%), Positives = 223/374 (59%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++  A+   G+ + TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 5   FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     ++ R R   PR LIL PTRELA Q+  + +   K  NL +  L+GG+ F+ Q K
Sbjct: 65  LLNNPVQEQRFRGE-PRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKK 123

Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +L+    D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P 
Sbjct: 124 QLDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPR 183

Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTL+FSAT + ++  ++  +L  P  +E+     T   +E        Q   K  L
Sbjct: 184 KEQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQ--DKYRL 241

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ +L+ ++ +   +IF N++  V  L   L+K G+ V  + G I Q  R+K+L  FK+G
Sbjct: 242 LQDILR-EEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQG 300

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +M+A+D+A RG+ +  V HV NF +P ++++Y+HRIGRTGRAG  G + + ++++D 
Sbjct: 301 KHNIMIATDVAGRGIHVEGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDA 360

Query: 355 KHIDAIEKLIEKKV 368
            ++  IEK I KK+
Sbjct: 361 FYLPEIEKAIGKKL 374


>gi|257487412|ref|ZP_05641453.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|320325825|gb|EFW81886.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327257|gb|EFW83271.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330879451|gb|EGH13600.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330988315|gb|EGH86418.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 482

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 95  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 154

Query: 63  LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L +        +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 155 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 214

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 215 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 274

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T+++  +++ +  +P  +E+ + +  ++ +E    A     + K  LL
Sbjct: 275 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 332

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 333 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 391

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 392 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 451

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 452 QLPAIEEKLGRKI 464


>gi|327264401|ref|XP_003217002.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like [Anolis
           carolinensis]
          Length = 820

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 151/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      ++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q 
Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572

Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           T                          RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 573 TNQKPDTDEAEDPDKMMANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632

Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
               E +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK 
Sbjct: 633 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G++ C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+
Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHRIGRTGRAG+ G A + V KED      +++ I      L   +SS  P L     A
Sbjct: 748 YIHRIGRTGRAGKSGVAISFVTKEDSAVFYDLKQAI------LESPVSSCPPELANHPDA 801

Query: 389 QHN 391
           QH 
Sbjct: 802 QHK 804


>gi|307636940|gb|ADN79390.1| cold-shock DEAD-box protein A [Helicobacter pylori 908]
          Length = 491

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 215/369 (58%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 82  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +   + T   I   F        ++   + +LL +Q
Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINKH--ERAEAIMRLLDTQ 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K+ I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 256 APEKS-IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374

Query: 363 LIEKKVDWL 371
            I+ +++  
Sbjct: 375 EIDSEIELF 383


>gi|126175005|ref|YP_001051154.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125998210|gb|ABN62285.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 427

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 142/362 (39%), Positives = 206/362 (56%), Gaps = 10/362 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LG+   ++  + +  YV PTP+Q  TIP VL   DV   A TG+GKTA+F +P+L  L +
Sbjct: 14  LGIIAPLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVE 73

Query: 66  GRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKLE 120
            +   +     R L+L PTRELA QVAD+F  Y  + N  L +    GG+   AQ + L 
Sbjct: 74  AKTDDKTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQSLR 133

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GADVL+ TPGR+LD  +   + +N +  LV+DEADRML +GF   +  +   +P  +QT
Sbjct: 134 AGADVLVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQT 193

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  +E+++++   L +P  +E    S    TI    +        K ALL  L++
Sbjct: 194 LLFSATFPEEVRELTAKLLNDP--LEYQFQSEQESTIHQRVITV--NRPMKTALLAHLIK 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      +IF + K    +L   L K+G S    HG+  Q +R ++L  FK G I +++
Sbjct: 250 -EHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLI 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V NFD+P    +Y+HRIGR+GRAG  G A TL++ ED  H   I
Sbjct: 309 ATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGVI 368

Query: 361 EK 362
           EK
Sbjct: 369 EK 370


>gi|110638219|ref|YP_678428.1| ATP-dependent RNA helicase protein [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280900|gb|ABG59086.1| ATP-dependent RNA helicase protein [Cytophaga hutchinsonii ATCC
           33406]
          Length = 413

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 223/373 (59%), Gaps = 4/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    L+P +  ++ +AG+ +PT IQ K+IP +L   DV  IAQTGTGKTA+FV+P+L
Sbjct: 1   MKFESYDLAPGIKKSLAEAGFNRPTDIQFKSIPPILAGEDVLAIAQTGTGKTAAFVIPVL 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            T++   ++       L++ PTRELA Q+++ F+K G    L    + GG+  EAQ    
Sbjct: 61  NTLINVKKSEHTDISCLVMAPTRELAVQISEVFKKIGAYTRLRTVCITGGVEQEAQIAAA 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D+L+ TPGR+ D   +  + +  ++ILV+DEAD MLD+GFI  IQ++   +P   Q
Sbjct: 121 DYGIDILVATPGRMFDLIYQKHIKITRVKILVLDEADHMLDLGFIKDIQDVKKFLPARHQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSAT+ +E++K++ + ++NP RI++      ++ I H     +     K   L++LL
Sbjct: 181 TLFFSATINEEIKKLAYSLVKNPIRIQIAPKDRVSKNITHS--VAFIGMDDKRFFLERLL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +     K  I+F   +     +  ++E+ G     +HG  +Q++R   +  FK GT+ ++
Sbjct: 239 KEHPESKV-IVFVRTQVRADRVQAAMERVGLKSVTMHGGKEQQARDAAMDAFKNGTVHVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D++ARG+DI  V +V N+D+P  AENY+HR+GRTGR    G A +  + E+   +D 
Sbjct: 298 IATDISARGIDIAGVEYVVNYDMPEVAENYVHRVGRTGRGVSKGFAISFCSMEEKPVLDE 357

Query: 360 IEKLIEKKVDWLN 372
           +E+ + K+++ + 
Sbjct: 358 VEEFLGKEINVIE 370


>gi|169795350|ref|YP_001713143.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AYE]
 gi|184158781|ref|YP_001847120.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii ACICU]
 gi|215482884|ref|YP_002325087.1| ATP-dependent RNA helicase rhlB [Acinetobacter baumannii
           AB307-0294]
 gi|239502877|ref|ZP_04662187.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AB900]
 gi|260554464|ref|ZP_05826685.1| superfamily II DNA and RNA helicase [Acinetobacter baumannii ATCC
           19606]
 gi|332850462|ref|ZP_08432782.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013150]
 gi|332871914|ref|ZP_08440326.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013113]
 gi|332875150|ref|ZP_08442983.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6014059]
 gi|169148277|emb|CAM86142.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter baumannii AYE]
 gi|183210375|gb|ACC57773.1| Superfamily II DNA and RNA helicase [Acinetobacter baumannii ACICU]
 gi|193077811|gb|ABO12683.2| ATP-dependent RNA helicase (DEAD box) [Acinetobacter baumannii ATCC
           17978]
 gi|213986779|gb|ACJ57078.1| ATP-dependent RNA helicase rhlB [Acinetobacter baumannii
           AB307-0294]
 gi|260411006|gb|EEX04303.1| superfamily II DNA and RNA helicase [Acinetobacter baumannii ATCC
           19606]
 gi|332730733|gb|EGJ62044.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013150]
 gi|332731128|gb|EGJ62429.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013113]
 gi|332736594|gb|EGJ67588.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6014059]
          Length = 383

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 143/374 (38%), Positives = 223/374 (59%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++  A+   G+ + TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 5   FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     ++ R R   PR LIL PTRELA Q+  + +   K  NL +  L+GG+ F+ Q K
Sbjct: 65  LLNNPVQEQRFRGE-PRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKK 123

Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +L+    D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P 
Sbjct: 124 QLDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPR 183

Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTL+FSAT + ++  ++  +L  P  +E+     T   +E        Q   K  L
Sbjct: 184 KEQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQ--DKYRL 241

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ +L+ ++ +   +IF N++  V  L   L+K G+ V  + G I Q  R+K+L  FK+G
Sbjct: 242 LQDILR-EEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQG 300

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +M+A+D+A RG+ +  V HV NF +P ++++Y+HRIGRTGRAG  G + + ++++D 
Sbjct: 301 KHNIMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDA 360

Query: 355 KHIDAIEKLIEKKV 368
            ++  IEK I KK+
Sbjct: 361 FYLPEIEKAIGKKL 374


>gi|186684628|ref|YP_001867824.1| DEAD/DEAH box helicase domain-containing protein [Nostoc
           punctiforme PCC 73102]
 gi|186467080|gb|ACC82881.1| DEAD/DEAH box helicase domain protein [Nostoc punctiforme PCC
           73102]
          Length = 509

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 135/349 (38%), Positives = 207/349 (59%), Gaps = 5/349 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LG+S + V  +   G+ +PT IQ++ IP +L   DV G +QTGTGKTA+F LP+L
Sbjct: 3   LSFQELGISQERVAQLEKIGFTEPTNIQVQAIPQLLGGRDVVGQSQTGTGKTAAFSLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  +  V+    ++L PTRELA QV D   ++  +  L V  + GG   + Q  +L 
Sbjct: 63  ERLDINQKAVQ---AIVLTPTRELAMQVHDAIAQFIGDEGLRVLAIYGGQSIDRQMLQLR 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++D  +RG L ++ ++  V+DEAD ML MGFI  +  I S  P  RQT
Sbjct: 120 RGVHMVVGTPGRVIDLLDRGCLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPVDRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++ +   FL++P  + V  P +    I          ++K  A LQ +L+
Sbjct: 180 ALFSATMPPSIRMLVNKFLRSPATVTVEQPKAAPNKINQVAYLIPRHWTKAKA-LQPILE 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D  +  +IF   ++    L   L+  G SV   HG++ Q++R ++L  F+   ++ +V
Sbjct: 239 MEDP-ETALIFVRTRRTAAELTSQLQGAGHSVDEYHGDLSQQARERLLVRFRNRQVRWVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           A+D+AARGLD+  + HV NFD+P+  E Y+HRIGRTGRAG+ G A +LV
Sbjct: 298 ATDIAARGLDVDQLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLV 346


>gi|325995530|gb|ADZ50935.1| Cold-shock DEAD-box protein A [Helicobacter pylori 2018]
 gi|325997128|gb|ADZ49336.1| ATP dependent RNA helicase [Helicobacter pylori 2017]
          Length = 491

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 215/369 (58%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 82  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +   + T   I   F        ++   + +LL +Q
Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K+ I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 256 APEKS-IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374

Query: 363 LIEKKVDWL 371
            I+ +++  
Sbjct: 375 EIDSEIELF 383


>gi|67477952|ref|XP_654408.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56471449|gb|EAL49018.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 432

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 151/374 (40%), Positives = 224/374 (59%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL P+V+  V   GY KPT IQ  +IP+ LQ+ D+ GIAQTG+GKTASF+LPM+  
Sbjct: 11  FKDLGLIPEVLKVVEYLGYKKPTRIQENSIPVALQKKDIIGIAQTGSGKTASFLLPMVQH 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L   + + R    +I+EPTRELAAQV +  ++ GK    LT  LL+GG+    Q+ +L +
Sbjct: 71  LLNVKEKNRGFYCIIIEPTRELAAQVVEVIDEMGKALPGLTSCLLVGGMDVMKQSVQLAK 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIE---ILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              V++ TPGRI+ H    K +  +IE    LVIDEAD++L+M F   I  +   +P  R
Sbjct: 131 RPQVIVGTPGRIVYHIKNTKGVEESIEKVKFLVIDEADKLLEMDFANEIDYLIEKLPKQR 190

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRI-EVNTPSSTAETI--EHCFVATYAQYSKKCALL 235
            T+LFSATM+ +++K+    L +P +I E      T +T+  E+CF+     +  +   L
Sbjct: 191 TTMLFSATMSTKVEKLQRASLTHPVKIKEEEQKYQTVDTLRQEYCFIP----FKYRDGYL 246

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +L+  +  K  IIF  +      L   L + G++   +HG + Q+ R+  L  FK G 
Sbjct: 247 ISILKETEG-KTIIIFTMKCSGCTKLVMMLRQMGYAAIPLHGKMSQQKRLIALEKFKSGK 305

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+D+A+RGLDIP+V  V N+D P   ++Y+HR+GRT RAG+ G A TLV +  I+
Sbjct: 306 RGILVATDVASRGLDIPNVDIVINYDCPLEPKDYVHRVGRTARAGKSGYAITLVTQYSIE 365

Query: 356 HIDAIEKLIEKKVD 369
               IE +IEKK++
Sbjct: 366 LYQRIETMIEKKLN 379


>gi|301386366|ref|ZP_07234784.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tomato
           Max13]
 gi|302060652|ref|ZP_07252193.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tomato
           K40]
 gi|302133062|ref|ZP_07259052.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 484

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 97  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 156

Query: 63  LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L +        +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 157 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 216

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 217 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 276

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T+++  +++ +  +P  +E+ + +  ++ +E    A     + K  LL
Sbjct: 277 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 334

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 335 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 393

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 394 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 453

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 454 QLPAIEEKLGRKI 466


>gi|229520951|ref|ZP_04410373.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TM 11079-80]
 gi|229342184|gb|EEO07180.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TM 11079-80]
          Length = 423

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 216/368 (58%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADL L P ++ A+ + G+ +PT +Q + IP  L   DV   A TGTGKTA+FV+P L  
Sbjct: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +    R LIL PTRELA QVA+  +   KN  L +  + GG+ ++     L  
Sbjct: 65  LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L++ +  +     IE L++DEADRMLDMGF P +  +++   + +QTL
Sbjct: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTL 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+    ++  + + L++P  ++  +P    + I   +         K  LL+++L 
Sbjct: 185 LFSATLEGRGVEGFTADLLKDPAHVDAESPRRERKKISQWY-HRADDMPHKVELLKKILT 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   +  I+F   ++ + +L   LEK       I G + Q  R   +S F+EG + +++
Sbjct: 244 EQ--AERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILL 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+PD+ HV NFD+P  A+ Y+HRIGRTGRAG+ G A +LV   D   +  +
Sbjct: 302 ATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARV 361

Query: 361 EKLIEKKV 368
           E+ I+++V
Sbjct: 362 ERYIKEEV 369


>gi|37681367|ref|NP_935976.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus YJ016]
 gi|39931700|sp|Q7MGP7|RHLB_VIBVY RecName: Full=ATP-dependent RNA helicase rhlB
 gi|37200119|dbj|BAC95947.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus YJ016]
          Length = 435

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 148/383 (38%), Positives = 225/383 (58%), Gaps = 11/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FADLGL+P+VV  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADLGLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            + T   +GR   + PR +I+ PTRELA Q+ ++ E    +  +  AL  GG  ++ Q  
Sbjct: 71  LLTTHAHEGRQPTQ-PRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G DVLI T GRI+D + +    +NNI+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLQGGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPAP 189

Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
           ++ L  LFSAT++  +Q+++   + NP+ + V     T   I+      Y     K ALL
Sbjct: 190 QERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELF--YPSNEDKMALL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R KIL  F +G+
Sbjct: 248 QTLIE-EEWPDRAIIFANTKYKCESIWAHLAADGHRVGLLTGDVPQKKREKILEQFTQGS 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + L+VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   ++   
Sbjct: 307 VDLLVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAI 366

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
           ++ AIE+ IE  +   + D S+L
Sbjct: 367 NLPAIEEYIEHTIPVSDYDSSAL 389


>gi|331008996|gb|EGH89052.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 482

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 95  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 154

Query: 63  LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L +        +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 155 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 214

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 215 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 274

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T+++  +++ +  +P  +E+ + +  ++ +E    A     + K  LL
Sbjct: 275 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 332

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 333 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 391

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 392 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 451

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 452 QLPAIEEKLGRKI 464


>gi|330899540|gb|EGH30959.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 483

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 96  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 155

Query: 63  LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L +        +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 156 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDRQLKQ 215

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 216 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 275

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T+++  +++ +  +P  +E+ + +  ++ +E    A     + K  LL
Sbjct: 276 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 333

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 334 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 392

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 393 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 452

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 453 QLPAIEEKLGRKI 465


>gi|225075877|ref|ZP_03719076.1| hypothetical protein NEIFLAOT_00900 [Neisseria flavescens
           NRL30031/H210]
 gi|224952823|gb|EEG34032.1| hypothetical protein NEIFLAOT_00900 [Neisseria flavescens
           NRL30031/H210]
          Length = 463

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 143/369 (38%), Positives = 214/369 (57%), Gaps = 13/369 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64

Query: 63  LEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    ++P+ IEV       +  E        ++  K  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  +++
Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRT      G A T     +   +  
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRT------GIAITFAEVNEYVKVHK 354

Query: 360 IEKLIEKKV 368
           IEK I +K+
Sbjct: 355 IEKYINRKL 363


>gi|218889195|ref|YP_002438059.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa LESB58]
 gi|218769418|emb|CAW25178.1| RNA helicase DbpA [Pseudomonas aeruginosa LESB58]
          Length = 458

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 147/392 (37%), Positives = 226/392 (57%), Gaps = 13/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LS  ++  +   GY + TPIQ +++PL+LQ HD+   A+TG+GKTA+F L +L+ 
Sbjct: 6   FSSLPLSADLLANLDSLGYREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLALLSP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L     R    + L+L PTRELA QVA    +  +   N+ V  L GG+P+  Q   LE 
Sbjct: 66  LNP---RYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI +H  +G L+++ +  LV+DEADRMLDMGF   I  I   +P  RQTL
Sbjct: 123 GAHVVVGTPGRIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPERRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D ++K+++ F+++P+++ V +  + ++  +  F     Q       L Q  + 
Sbjct: 183 LFSATYPDGIEKLAKTFMRDPRQVRVESLHADSQIEQRFFEIDPKQRMDAVVRLLQHFRP 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q +    + FC  ++    L  +L+ Q  S  A+HG+++QR R ++L+ F   +  ++VA
Sbjct: 243 QSS----VAFCQTRQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++    E +IHRIGR+GRAG  G A +LVA  +     AIE
Sbjct: 299 TDVAARGLDIAALETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIE 358

Query: 362 KLIEKKVDW-----LNGDLSSLNPPLEKIDIA 388
            L ++ + W     L      L PP+  + IA
Sbjct: 359 DLQKQPLAWYALGQLKASPEPLLPPMSTLCIA 390


>gi|328948067|ref|YP_004365404.1| DEAD/DEAH box helicase [Treponema succinifaciens DSM 2489]
 gi|328448391|gb|AEB14107.1| DEAD/DEAH box helicase domain protein [Treponema succinifaciens DSM
           2489]
          Length = 534

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 135/371 (36%), Positives = 226/371 (60%), Gaps = 8/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   ++  +  AGYV  TP+Q + +   L+  D+   +QTGTGKTA+++  ++
Sbjct: 1   MKFTEFSLHESLLQGIEGAGYVDCTPVQEQVLKSSLEGRDLYVQSQTGTGKTAAYLTSVI 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L +G +  +  + L++ PTRELA QV +  +K  K  +L  A   GG+ ++ Q   L
Sbjct: 61  QELLTRGESAGK--KALVMVPTRELAVQVQEEAQKLAKFTSLKCASFYGGVGYDKQVASL 118

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-- 177
           ++G D++I TPGR++D  +  ++ ++++  LVIDEADRM DMGF P ++ +  ++P +  
Sbjct: 119 KKGVDIMIGTPGRVIDLNHGNQMDLSSVAFLVIDEADRMFDMGFYPDLRTLIKVLPSSEQ 178

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT+   ++ ++  + +NP  I +   + T + I       +     K  LL  
Sbjct: 179 RQTMLFSATLNSYVKNLAWEYTRNPAEITIAAENITVDEIAQELF--HVSSDDKMKLLLG 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++ S +  ++ I+FCN KK+   +   L+  GF    I G++ Q+ R+ I+  FK G I+
Sbjct: 237 II-SHEKPESLIVFCNTKKSCEIVAKRLKMNGFESEFIIGDLPQKKRLTIMDKFKAGAIK 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARG+D+ D+  V N+D+PN AENY+HRIGRT RAG+ GKAFT  +++D+  +
Sbjct: 296 CLVATDVAARGIDVNDLAMVINYDLPNEAENYVHRIGRTARAGKSGKAFTFCSEQDVYSL 355

Query: 358 DAIEKLIEKKV 368
             IE+ IEK +
Sbjct: 356 PPIERYIEKSI 366


>gi|50543676|ref|XP_500004.1| YALI0A12133p [Yarrowia lipolytica]
 gi|74660195|sp|Q6CH58|RRP3_YARLI RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|49645869|emb|CAG83933.1| YALI0A12133p [Yarrowia lipolytica]
          Length = 480

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 139/371 (37%), Positives = 220/371 (59%), Gaps = 13/371 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+   +     +  + KPTPIQ ++IP  L+  D+ G+AQTG+GKTA+F +P+L  
Sbjct: 66  FKDLGVIDSICETCEELKFTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQS 125

Query: 63  LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L +       P+ L   +L PTRELA Q+++ FE  G    L  A+++GG+    Q   L
Sbjct: 126 LYEN------PQPLYCVVLAPTRELAYQISETFEALGSAMGLRTAVVVGGMNMMTQAVAL 179

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   V++ TPGR++DH    K   +  ++ LV+DEADR+LDM F P +  I  ++P  R
Sbjct: 180 SKKPHVIVATPGRLVDHLENTKGFSLRTLKFLVMDEADRLLDMEFGPSLDKILKVIPRQR 239

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            T LFSATMT +++K+    L +P R+ V+T   TA+ +    V  +  +  K   L  L
Sbjct: 240 NTYLFSATMTSKVEKLQRASLVDPVRVAVSTKYQTADNLLQYMV--FCPFKHKDTHLVYL 297

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S++   + IIF   K +   +   L   G+    +HG++ Q +R+  L+ FK G+  +
Sbjct: 298 V-SENAGNSMIIFARTKSDTQRISLLLRNLGYGAIPLHGDLSQTARLGALNKFKSGSRNI 356

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDIP V  V N+D+P+ +++YIHR+GRT RAGR GK+  LV++ D++   
Sbjct: 357 LIATDVASRGLDIPAVDLVINYDIPSDSKSYIHRVGRTARAGRAGKSVALVSQYDLELYL 416

Query: 359 AIEKLIEKKVD 369
            IE  + KK+D
Sbjct: 417 RIEGALGKKLD 427


>gi|330950967|gb|EGH51227.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae Cit 7]
          Length = 483

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 96  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 155

Query: 63  LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L +        +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 156 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 215

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 216 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 275

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T+++  +++ +  +P  +E+ + +  ++ +E    A     + K  LL
Sbjct: 276 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 333

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 334 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 392

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 393 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 452

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 453 QLPAIEEKLGRKI 465


>gi|327404500|ref|YP_004345338.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327320008|gb|AEA44500.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 407

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 128/351 (36%), Positives = 216/351 (61%), Gaps = 4/351 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+D  +S ++   +   G+ +PT IQ K I  +L   DV GIAQTGTGKTA+F +P++
Sbjct: 1   MRFSDYPISDEIKKQLEVLGFKRPTDIQFKAISPILNGEDVFGIAQTGTGKTAAFAIPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   R + + PR ++L PTRELA Q+ D FE  G   N+ +  ++GG+  + Q ++L+
Sbjct: 61  HKLSTSRPKSKSPRCIVLAPTRELAEQIKDAFESIGVGSNIRITAILGGLEQDKQIQELK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQ 179
           RG DV++ TPGR+ D  ++G L +++I+ LV+DEADRMLD+GF   ++ I  L P   RQ
Sbjct: 121 RGTDVIVATPGRVFDLRSQGHLSLDSIQFLVLDEADRMLDLGFAHDMKAIHKLSPQRNRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+ FSAT+  +++ ++ + +++  RI+++     ++ +EH   A   +   K   L+ ++
Sbjct: 181 TMFFSATIDKKIKALAYDLVRDAIRIQISPDDPVSKNVEHG--AITVEMDDKRFFLENII 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +  K  ++F   K     +  ++E+ G    A+HG I+Q+ R  +L  FK G  +++
Sbjct: 239 KEYEEFKY-VVFVRTKVRCERVVAAMERVGIHSEALHGGIEQKDRFAVLERFKSGENKIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           + +D+AARG+DI  V +V N+D+P++ E Y+HRIGRTGR    G+A +  +
Sbjct: 298 ITTDVAARGIDIQGVDYVINYDLPDQPEQYVHRIGRTGRGENKGQALSFCS 348


>gi|298208537|ref|YP_003716716.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
 gi|83848460|gb|EAP86329.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
          Length = 445

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 154/415 (37%), Positives = 226/415 (54%), Gaps = 14/415 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL LSP +  A+ + G V PTPIQ ++ P+++   DV GIAQTGTGKT ++ LP+L +
Sbjct: 5   FKDLNLSPSLQKALDELGIVHPTPIQEESFPVIMSGRDVVGIAQTGTGKTYAYALPVLRL 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   R     PR LI+ PTREL  QV    EK     ++ +  + GG     Q K +  G
Sbjct: 65  LPYSRQV--NPRALIIVPTRELVVQVVSEIEKLCTLNDMRILGVYGGTNINTQKKAVVEG 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVL+ TPGR+ D      L + NI+ LVIDE D MLD+GF   + NI  ++P   Q +L
Sbjct: 123 CDVLVATPGRLYDLAVSHVLQLKNIQKLVIDEVDVMLDLGFRFQLVNILDILPKKHQNIL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATMTDE+  +   F  NP +I V    +    I+  +      Y  K  L+  LL+  
Sbjct: 183 FSATMTDEVSSMISEFFNNPIKISVAKSGTPLVNIQQ-YRYNVPNYYTKQNLIIHLLEDV 241

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGF--SVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +T +  +IF   K+ + +   ++  + F      IH N  Q  R+  +  F+ G  ++M+
Sbjct: 242 ETYEKTLIFVPNKR-IADRLFAVVDKTFPDQASVIHSNKTQNYRLNSIEAFETGEHRIMI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLDI D+ HV N D P+  ENY+HRIGRTGRA + G A  L ++ +++ +  I
Sbjct: 301 ATDVMARGLDIDDISHVINMDTPSYPENYLHRIGRTGRAEKKGTALVLTSESEVEWLKTI 360

Query: 361 EKLIEKKVDW--LNGDLS---SLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           E+L+E KVD   +  D+     L P  ++  +  +N  +K    P K   F  +K
Sbjct: 361 EELMETKVDTIEMTNDVEISKELAPEEQQKPVEIYNPLKKE---PSKGKAFHEKK 412


>gi|331015254|gb|EGH95310.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 484

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 97  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 156

Query: 63  LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L +        +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 157 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 216

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 217 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 276

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T+++  +++ +  +P  +E+ + +  ++ +E    A     + K  LL
Sbjct: 277 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 334

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 335 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 393

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 394 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 453

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 454 QLPAIEEKLGRKI 466


>gi|297744770|emb|CBI38032.3| unnamed protein product [Vitis vinifera]
          Length = 797

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 140/373 (37%), Positives = 207/373 (55%), Gaps = 25/373 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  LS +++ AV  AGY  P+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPMLT 
Sbjct: 308 WVESKLSTELLKAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTY 367

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + +            P  +++ PTRELA Q+ D   K+     + V  ++GG   E Q  
Sbjct: 368 ISRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGF 427

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           ++ +G +V+I TPGR++D   R   ++N    +V+DEADRM+DMGF P +  +   +P +
Sbjct: 428 RIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 487

Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
                            R T +FSATM   +++++  +L+NP  + + T     + I   
Sbjct: 488 NLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQH 547

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
            +    + S+K   LQ+LL      K  I+F N KK+  NL   L+K G+ V  +HG   
Sbjct: 548 VIMM--KESEKMFKLQKLLDELGD-KTAIVFINTKKSADNLAKGLDKAGYRVTTLHGGKS 604

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q  R   L  F+     ++VA+D+A RG+DIPDV HV N+D+P   E Y HRIGRTGRAG
Sbjct: 605 QEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAG 664

Query: 341 RHGKAFTLVAKED 353
           + G A T +   D
Sbjct: 665 KTGVATTFLTLHD 677


>gi|168017610|ref|XP_001761340.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687346|gb|EDQ73729.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 589

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 144/391 (36%), Positives = 220/391 (56%), Gaps = 19/391 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++ L P +   +    Y KPTP+Q   IP+ L   D+   AQTG+GKTA+F  P++  
Sbjct: 143 FAEIDLGPALNENIRRCKYTKPTPVQRYAIPISLHGRDLMACAQTGSGKTAAFCFPIIAG 202

Query: 63  LEK----GRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           + +    GR+R     +P  LIL PTREL+ Q++D  +K+     + V +  GG P   Q
Sbjct: 203 IMRNTPPGRSRGGRKALPLALILSPTRELSCQISDEAKKFAYQTGIKVVVCYGGAPVHNQ 262

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            +++ERG D+L+ TPGR+ D   R ++ ++ +  L +DEADRMLDMGF P I+ I   + 
Sbjct: 263 LREMERGVDILVATPGRLSDLLERARVSLSMVRYLALDEADRMLDMGFEPQIRRIVEQMD 322

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQT+LFSAT   E+Q+++ +FL N   + V    S+ E I       Y Q S K
Sbjct: 323 MPPAGERQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTELIVQ--RVEYVQDSDK 380

Query: 232 CALLQQLLQSQDTMKN------GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            ++L  L+ +Q  +         ++F   KK   +L   L + GF    IHG+  Q+ R 
Sbjct: 381 RSMLMDLIHAQSALAPPGQQSLTLVFVETKKGADSLEDWLCRMGFPATTIHGDRSQQERE 440

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L +F+ G   ++VA+D+AARGLDIP V HV NFD+P+  ++Y+HRIGRTGRAG+ G A
Sbjct: 441 HALRSFRTGVTPILVATDVAARGLDIPHVAHVVNFDLPSDIDDYVHRIGRTGRAGKSGVA 500

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
                ++D     ++ +L+ +    + G L+
Sbjct: 501 TAFFNEKDQSLARSLAELMTESSQEVPGWLT 531


>gi|156549439|ref|XP_001603249.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 795

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 139/354 (39%), Positives = 214/354 (60%), Gaps = 4/354 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G    ++ ++    Y +PTPIQ ++IP+ L   D+ GIA+TG+GKTA+FV PML  
Sbjct: 257 FGHFGFDDSLIKSIRKHEYTQPTPIQAQSIPVALSGRDLIGIAKTGSGKTAAFVWPMLVH 316

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +  +K       P  LIL PTREL+ Q+    +K+GK YN+ V    GG     Q+K LE
Sbjct: 317 IMDQKELDSGDGPIGLILAPTRELSQQIYHEAKKFGKVYNIRVCCCYGGGSKWEQSKALE 376

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA++++ TPGRI+D        ++ +  LV+DEADRM DMGF P +++I + V   RQT
Sbjct: 377 SGAEIVVATPGRIIDLVKMKATNLSRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQT 436

Query: 181 LLFSATMTDELQKVSENFLQNPKRI-EVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT    ++K++ + L +P RI + +   +  +  +H  V  Y   + K   L Q +
Sbjct: 437 LLFSATFKKRIEKLARDALTDPIRIVQGDVGEANTDVTQHVIV-FYKNPTGKWTWLNQNI 495

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               +  + +IF  +K N   L ++L+ + + V  +HG++DQ  R K++++FK+ T+ ++
Sbjct: 496 VEYLSSGSLLIFVTKKLNAEELANNLKLKEYEVLLLHGDMDQVERNKVITSFKKKTVSIL 555

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TLV ++D
Sbjct: 556 VATDVAARGLDIPHIRTVINYDVARDIDTHTHRIGRTGRAGEKGTAYTLVTEKD 609


>gi|63255030|gb|AAY36126.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
          Length = 485

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 98  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 157

Query: 63  LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L +        +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 158 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 217

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 218 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 277

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T+++  +++ +  +P  +E+ + +  ++ +E    A     + K  LL
Sbjct: 278 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 335

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 336 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 394

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 395 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 454

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 455 QLPAIEEKLGRKI 467


>gi|213967088|ref|ZP_03395237.1| atp dependent rna helicase [Pseudomonas syringae pv. tomato T1]
 gi|213927930|gb|EEB61476.1| atp dependent rna helicase [Pseudomonas syringae pv. tomato T1]
          Length = 486

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 99  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 158

Query: 63  LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L +        +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 159 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 218

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 219 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 278

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T+++  +++ +  +P  +E+ + +  ++ +E    A     + K  LL
Sbjct: 279 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 336

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 337 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 395

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 396 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 455

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 456 QLPAIEEKLGRKI 468


>gi|148244979|ref|YP_001219673.1| ATP-dependent RNA helicase DeaD [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326806|dbj|BAF61949.1| ATP-dependent RNA helicase DeaD [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 608

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 151/371 (40%), Positives = 227/371 (61%), Gaps = 14/371 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  ++  +   GY  P+PIQ + I  +L   D+ G AQTGTGKTA+FVLP+L  
Sbjct: 14  FERLGLSNTILNVLDSIGYETPSPIQEQCITHLLNNKDIIGQAQTGTGKTAAFVLPLL-- 71

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
            +K    +  P+ LIL PTRELA QV++  + Y +      V  + GG  ++ Q + L+R
Sbjct: 72  -DKINLNINAPQLLILAPTRELAIQVSEAVQTYARGMKGFHVLPIYGGQSYDIQLRPLKR 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G   ++ TPGR++DH  +  L ++N++  V+DEAD ML MGFI  I+ I   +P  RQ  
Sbjct: 131 GVHAIVGTPGRVMDHIEKKTLKLDNLKSFVLDEADEMLKMGFIDDIKWIMQRIPEQRQIA 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLL 239
           LFSATM + ++K+++ FL  PK I++ T + TA TI  ++C V      S K   L ++L
Sbjct: 191 LFSATMPNVIKKIAKQFLNQPKIIKIKTKTETATTITQKYCMVGGL---SNKLEALTRIL 247

Query: 240 QSQ--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +    D M   IIF   K     L   L  +GFS  AI+G+I Q  R +I++++K+G I 
Sbjct: 248 EVTVFDAM---IIFVRTKTLTTELTEKLSARGFSADAINGDIQQNQRERIINDYKQGKID 304

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARGLD+  + HV N+D+P  AE+Y+HRIGRTGRAGR G+A   V+  + + +
Sbjct: 305 ILIATDIAARGLDVERISHVVNYDIPQDAESYVHRIGRTGRAGRKGEAILFVSNRERRML 364

Query: 358 DAIEKLIEKKV 368
           + IE +  +K+
Sbjct: 365 NTIEHVTRQKI 375


>gi|302188406|ref|ZP_07265079.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. syringae
           642]
          Length = 483

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 96  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 155

Query: 63  LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L +        +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 156 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 215

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 216 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 275

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T+++  +++ +  +P  +E+ + +  ++ +E    A     + K  LL
Sbjct: 276 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 333

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 334 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 392

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 393 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 452

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 453 QLPAIEEKLGRKI 465


>gi|289628603|ref|ZP_06461557.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289647202|ref|ZP_06478545.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330867826|gb|EGH02535.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 482

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 95  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 154

Query: 63  LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L +        +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 155 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 214

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 215 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 274

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T+++  +++ +  +P  +E+ + +  ++ +E    A     + K  LL
Sbjct: 275 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 332

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 333 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 391

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 392 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 451

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 452 QLPAIEEKLGRKI 464


>gi|269468447|gb|EEZ80112.1| hypothetical protein Sup05_1361 [uncultured SUP05 cluster
           bacterium]
          Length = 461

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 148/362 (40%), Positives = 214/362 (59%), Gaps = 9/362 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ L L P ++  +   GY   TPIQ  ++P +L   DV G  +TG+GKTA+F L +L 
Sbjct: 5   DFSSLDLHPDLLKNLATLGYQSMTPIQQLSLPAILSGKDVIGQGKTGSGKTAAFGLGLLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            L+    +    ++++L PTRELA QVA    K  +  +N+ V  L GG PF  Q   LE
Sbjct: 65  KLD---VKSFKAQSIVLCPTRELADQVATEIRKLARAIHNIKVLTLCGGAPFGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGRI +H  +G L + +I  LV+DEADRMLDMGF   I  I   +P  RQT
Sbjct: 122 HGVHIVVGTPGRIEEHLRKGTLKLGSITTLVLDEADRMLDMGFQDTIDEIIEKIPSKRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE-TIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT  +E+  ++E  +QNP  +E   PS+  E TI+  F    +   +  AL  +LL
Sbjct: 182 LLFSATFPNEIASIAERVMQNPTMVEA--PSTHEESTIKQYFYKANSADDRMTAL--RLL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   ++ +IFCN K +  ++   L   GF   AIHG++DQR R + L  F   ++ ++
Sbjct: 238 LAKHKPESVLIFCNTKIDTQDVADELVYYGFYALAIHGDLDQRERDQALIRFSNKSVSVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NF++ +  E ++HRIGRTGRAGR G A TL    +   +DA
Sbjct: 298 VATDVAARGLDIDALDMVVNFNIAHDPEVHVHRIGRTGRAGRSGIACTLYGDRETHKLDA 357

Query: 360 IE 361
           +E
Sbjct: 358 LE 359


>gi|260592210|ref|ZP_05857668.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           veroralis F0319]
 gi|260535844|gb|EEX18461.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           veroralis F0319]
          Length = 573

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 143/373 (38%), Positives = 221/373 (59%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L+ KV+ A+ D  + K TP+Q K IP +L+ HDV G+AQTGTGKTA+++LP+L
Sbjct: 1   MYFEDLDLNDKVLDALYDMRFDKCTPVQEKCIPEILKGHDVLGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIG--GIPFEAQN 116
           + L  G         +I+ PTRELA Q+    + +    N    VA+  G  G  ++ + 
Sbjct: 61  SKLADGGYPESAINCVIMSPTRELAQQIDQAMQGFAYYLNGVSCVAVYGGNDGNRYDQEL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  GADV+I TPGR + H + G + ++ +   ++DEADRMLDMGF   I  I   +P 
Sbjct: 121 KSLSLGADVVIATPGRFISHLSLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKKLPN 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T QT++FSATM  +++++++  L+NP  I++   S  AE I       Y   ++K  +L+
Sbjct: 181 TCQTIMFSATMPKKIEELAKTLLKNPVEIKLAV-SKPAEKIHQMAYVCYE--TQKMGILK 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            + +  + MK  IIF   K+ V  +  +L ++  +   +H ++DQ  R  I+  FK G +
Sbjct: 238 DVFKGGN-MKRVIIFSGSKQKVKRIAGALSRKHINCGEMHSDLDQEQRNDIMFKFKSGQV 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ +RG+DI D+  V N+DVP+  E+Y+HRIGRT RA   G A TLV  +DI  
Sbjct: 297 DVLVATDIVSRGIDIDDITMVINYDVPHDVEDYVHRIGRTARADHDGTAITLVNADDIYF 356

Query: 357 IDAIEKLIEKKVD 369
              IE  + K+++
Sbjct: 357 FQQIESFLGKEIE 369


>gi|238925630|ref|YP_002939147.1| DEAD/DEAH box helicase-like protein [Eubacterium rectale ATCC
           33656]
 gi|238877306|gb|ACR77013.1| DEAD/DEAH box helicase-like protein [Eubacterium rectale ATCC
           33656]
 gi|291524137|emb|CBK89724.1| Superfamily II DNA and RNA helicases [Eubacterium rectale DSM
           17629]
 gi|291527820|emb|CBK93406.1| Superfamily II DNA and RNA helicases [Eubacterium rectale M104/1]
          Length = 530

 Score =  259 bits (663), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 140/367 (38%), Positives = 218/367 (59%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L+PK++  + D G+ + TPIQ + IP VL   DV G AQTGTGKTA+F +P   +
Sbjct: 6   FDELELNPKILRGIKDMGFEEATPIQAQGIPAVLSGRDVIGQAQTGTGKTAAFGIP---V 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           LE   A     + +IL PTRELA QVAD   K  K  + + V  + GG     Q K L+ 
Sbjct: 63  LESVDASSHKTQVIILSPTRELAIQVADEIRKLAKYMHGVKVLPVYGGQDISRQIKALKG 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR++DH  R  +  ++++ +V+DEAD ML+MGF   I+ +   +P   QT+
Sbjct: 123 GVQIIIGTPGRLMDHLRRKTIRPDHVKTIVLDEADEMLNMGFREDIETVLEYLPQEHQTV 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   + +++  +  +   I++     T   I+  +     +   K  +L +LL  
Sbjct: 183 LFSATMPKPILEITRKYQHDAINIKIVKKELTVANIDQYYYDV--KRKDKIDVLTRLLDY 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  K  ++FCN KK V  L + L  +G+S   +HG++ Q  R +++ NF+ G   +++A
Sbjct: 241 YNP-KLSLVFCNTKKMVDELAYELCGRGYSAEGLHGDMKQVQRDRVMKNFRNGKTDILIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR GKAF+ V  +++  +  I+
Sbjct: 300 TDVAARGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGRCGKAFSFVKGKEVYKLKDIQ 359

Query: 362 KLIEKKV 368
           +  + K+
Sbjct: 360 RYCKTKI 366


>gi|170756598|ref|YP_001781574.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum B1 str.
           Okra]
 gi|169121810|gb|ACA45646.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum B1 str. Okra]
          Length = 376

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 147/368 (39%), Positives = 220/368 (59%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS  ++  +     ++PTPIQ ++I L+   +DV   AQTGTGKT +F+LPM 
Sbjct: 2   IKFEELGLSDSIIDVLKKQRIIEPTPIQKESIMLIKNGNDVIAEAQTGTGKTLAFLLPMF 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E     +   + LI+ PTRELA Q+ +   K  +  +L +    GG    +Q KKL+
Sbjct: 62  ---ENISPDINAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH NR  L   +++ LV+DEAD ML MGF   +++I    P  RQT
Sbjct: 119 NNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++   +++PK I +     T + I+   + T  +  +K   L ++L 
Sbjct: 179 LCFSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNIKQVLIETTDR--RKQEDLCKILD 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     IIFC  K+ V  L  +L K+G++   +HG+I Q  R +I+ +FK   IQ ++
Sbjct: 237 EENPFM-AIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLI 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HVFN+D+P  AE+YIHRIGRTGRAG  G  F  VA +D + +  I
Sbjct: 296 ATDVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLGMI 355

Query: 361 EKLIEKKV 368
           E+ I+ K+
Sbjct: 356 EREIKFKI 363


>gi|158514833|sp|A3LSN3|DRS1_PICST RecName: Full=ATP-dependent RNA helicase DRS1
          Length = 741

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 152/398 (38%), Positives = 232/398 (58%), Gaps = 19/398 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  V+  +   GY KP+PIQ  +IP+ L   D+   A TG+GKTA++++P++  
Sbjct: 224 FQTLQLSRPVLKGLSQLGYTKPSPIQSASIPIALLGRDIVAGAVTGSGKTAAYMIPIIER 283

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           L    ++V   R ++L PTRELA QV D  +K G+  N L   L +GG+    Q ++L+ 
Sbjct: 284 LLYKPSKVASTRVIVLTPTRELAIQVGDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKS 343

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQ 179
             DV+I TPGR++DH  N     ++++E+LVIDEADRMLD GF   +  I SL+P   RQ
Sbjct: 344 RPDVVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQVELTEILSLIPKNKRQ 403

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  ++Q + +  LQ P RI ++ P + A  +   FV    +   K ALL QLL
Sbjct: 404 TLLFSATMNTKIQDLIQLSLQRPVRIMIDPPKTAATKLTQEFVRIRKRDHLKPALLFQLL 463

Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  D  +    ++F ++K++   L   L   G  V  +HG++ Q  R+  +++FK+  + 
Sbjct: 464 KKLDPAQQSRIVVFVSRKESAHKLRIVLGLLGMKVSELHGSLTQEQRLNNVNDFKKLIVP 523

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA------- 350
           +++ +DLAARGLDIP +  V N+D+P   E Y+HR+GRT RAGR G + + V        
Sbjct: 524 VLICTDLAARGLDIPKIEIVINYDMPKSHEVYLHRVGRTARAGRDGTSISFVGESTSDRN 583

Query: 351 --KEDIKHIDAIE---KLIEKKVDWLNGDLSSLNPPLE 383
             K+ IK ++  E   K + + +DW+  D+  LN  +E
Sbjct: 584 IVKDAIKSLEGGEVKGKAVSRNIDWV--DVEQLNKIVE 619


>gi|217972736|ref|YP_002357487.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217497871|gb|ACK46064.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 427

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 142/362 (39%), Positives = 206/362 (56%), Gaps = 10/362 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LG+   ++  + +  YV PTP+Q  TIP VL   DV   A TG+GKTA+F +P+L  L +
Sbjct: 14  LGIIAPLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVE 73

Query: 66  GRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKLE 120
            +   +     R L+L PTRELA QVAD+F  Y  + N  L +    GG+   AQ + L 
Sbjct: 74  AKTDDKTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQSLR 133

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GADVL+ TPGR+LD  +   + +N +  LV+DEADRML +GF   +  +   +P  +QT
Sbjct: 134 AGADVLVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQT 193

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  +E+++++   L +P  +E    S    TI    +        K ALL  L++
Sbjct: 194 LLFSATFPEEVRELTAKLLNDP--LEYQFQSEQESTIHQRVITV--NRPMKTALLAHLIK 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      +IF + K    +L   L K+G S    HG+  Q +R ++L  FK G I +++
Sbjct: 250 -EHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLI 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V NFD+P    +Y+HRIGR+GRAG  G A TL++ ED  H   I
Sbjct: 309 ATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGVI 368

Query: 361 EK 362
           EK
Sbjct: 369 EK 370


>gi|298485798|ref|ZP_07003877.1| ATP-dependent RNA helicase RhlB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159824|gb|EFI00866.1| ATP-dependent RNA helicase RhlB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 484

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 97  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 156

Query: 63  LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L +        +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 157 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 216

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 217 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 276

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T+++  +++ +  +P  +E+ + +  ++ +E    A     + K  LL
Sbjct: 277 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 334

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 335 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 393

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 394 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 453

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 454 QLPAIEEKLGRKI 466


>gi|293609547|ref|ZP_06691849.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827999|gb|EFF86362.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325122816|gb|ADY82339.1| ATP-dependent RNA helicase RhlB [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 389

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 143/374 (38%), Positives = 223/374 (59%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++  A+   G+ + TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 11  FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 70

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     ++ R R   PR LIL PTRELA Q+  + +   K  NL +  L+GG+ F+ Q K
Sbjct: 71  LLNNPIQEQRFRGE-PRALILAPTRELALQIESDAKFLTKFSNLHLVTLLGGVDFDKQKK 129

Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +L+    D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P 
Sbjct: 130 QLDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPR 189

Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTL+FSAT + ++  ++  +L  P  +E+     T   +E        Q   K  L
Sbjct: 190 KEQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQ--DKYRL 247

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ +L+ ++ +   +IF N++  V  L   L+K G+ V  + G I Q  R+K+L  FK+G
Sbjct: 248 LQDILR-EEPIDKVMIFANRRDQVRRLYDHLKKDGYRVGMLSGEIAQDKRLKMLEQFKQG 306

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +M+A+D+A RG+ +  V HV NF +P ++++Y+HRIGRTGRAG  G + + ++++D 
Sbjct: 307 KHNIMIATDVAGRGIHVDGVSHVINFTLPEQSDDYVHRIGRTGRAGSQGVSISFLSEDDA 366

Query: 355 KHIDAIEKLIEKKV 368
            ++  IEK I KK+
Sbjct: 367 FYLPEIEKAIGKKL 380


>gi|238917309|ref|YP_002930826.1| ATP-dependent RNA helicase DeaD [Eubacterium eligens ATCC 27750]
 gi|238872669|gb|ACR72379.1| ATP-dependent RNA helicase DeaD [Eubacterium eligens ATCC 27750]
          Length = 571

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 223/369 (60%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +  +++ AV D G+ + +PIQ + IP VL+  DV G AQTGTGKTA++ +PML
Sbjct: 1   MKFDELNIDERILRAVEDMGFEETSPIQTQAIPAVLEGIDVIGQAQTGTGKTAAYSIPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
              +K    V+ P+ ++L PTRELA QVA+   K  K   ++ V  + GG     Q K L
Sbjct: 61  ---QKINPDVKKPQAIVLCPTRELAVQVAEEIRKLAKYMSDIKVLPVYGGQEIVRQIKSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  +++ TPGR++DH  R  +  +++ ++++DEAD MLDMGF   ++ I +  P  RQ
Sbjct: 118 KAGVQIIVGTPGRVMDHMRRKTVKFDSVSMVILDEADEMLDMGFREDMETILTETPEERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + +++  F ++ + I+V     T   I+  +     +   K  +L +L+
Sbjct: 178 TVLFSATMPKPIMEIARKFQKDARIIKVVRKELTVSNIDQFYYEVRPK--NKTEILSRLI 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  K  ++FCN K+ V  L   L+ +G+    IHG++ Q+ R +++ +F+ G  +++
Sbjct: 236 DIYNP-KLSVVFCNTKRQVDELISELKGRGYFADGIHGDMKQQQRDRVMDDFRSGKTEIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+  V  VFN+D+P   E Y+HRIGRTGRAG+ G A + ++  ++  +  
Sbjct: 295 IATDVAARGIDVDGVDIVFNYDLPQDEEYYVHRIGRTGRAGKSGLALSFISGREVYKLKD 354

Query: 360 IEKLIEKKV 368
           IE+  + K+
Sbjct: 355 IERYCKTKI 363


>gi|109947876|ref|YP_665104.1| ATP-dependent RNA helicase [Helicobacter acinonychis str. Sheeba]
 gi|109715097|emb|CAK00105.1| ATP-dependent RNA helicase [Helicobacter acinonychis str. Sheeba]
          Length = 494

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 24  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 84  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTKTKTVCVYGGQSVKKQCEFIKKN 139

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 140 PQVMIATPGRLLDHLKNDRIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 199

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++K+++  L+NP +I +   + T   I   F        ++   +  LL +Q
Sbjct: 200 FSATMPEPIKKLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERSEAIMHLLDTQ 257

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K+ I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 258 APEKS-IVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 316

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 317 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 376

Query: 363 LIEKKVDWL 371
            I+ +++  
Sbjct: 377 EIDSEIELF 385


>gi|114564377|ref|YP_751891.1| ATP-dependent RNA helicase DbpA [Shewanella frigidimarina NCIMB
           400]
 gi|114335670|gb|ABI73052.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 467

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 149/385 (38%), Positives = 228/385 (59%), Gaps = 13/385 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P+++  +   G+   T IQ +++P +L   DV G A TG+GKTA+F L +L  
Sbjct: 13  FTSLKLKPELLENLQTMGFESMTQIQAESLPPILAGEDVIGQAMTGSGKTAAFGLGLLNK 72

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L+  R R++   T++L PTRELA QVA +     +  +N+ V  L GG+P   Q   LE 
Sbjct: 73  LDVKRFRIQ---TMVLCPTRELADQVAKDIRTLARGIHNVKVLTLCGGVPMGPQVGSLEH 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +R +L ++N+ +L++DEADRML+MGF  +I  I +  P  RQTL
Sbjct: 130 GAHIIVGTPGRIVDHLDRNRLDLSNMNMLILDEADRMLEMGFQQHIDQIIAAAPRERQTL 189

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D++Q +++  L  P  ++V        TI+  F        +  AL   LL  
Sbjct: 190 LFSATFPDQIQAIADQILYKPVMVKVEAKHDNL-TIDQHFYRIEDNQGRLEALRLLLLDK 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ ++FCN K+    +  SL + GFSV A+HG+++QR R ++L  F   + +++VA
Sbjct: 249 QP--ESAVVFCNTKRETQQVADSLHEFGFSVLALHGDLEQRDRDQMLLQFANRSARILVA 306

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++  VFN+ +    E +IHRIGRTGRAG  G A+T   +ED   +  IE
Sbjct: 307 TDVAARGLDIDELDAVFNYHIAYDTEVHIHRIGRTGRAGSSGAAYTFFGEEDGYKMAMIE 366

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKID 386
           + + K V      +S   PP+  ++
Sbjct: 367 EAMNKDV------VSEPLPPMSALN 385


>gi|327272750|ref|XP_003221147.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
           [Anolis carolinensis]
          Length = 445

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 141/368 (38%), Positives = 224/368 (60%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG++ +V+C   D  G+  PT IQ+++IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 18  FKELGVT-EVLCEACDQLGWKTPTKIQVESIPLALQGRDIIGLAETGSGKTGAFALPILQ 76

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R      L+L PTRELA Q+++ FE  G +  +  A+++GGI   AQ+  L +
Sbjct: 77  ALLETPQRFF---ALVLTPTRELAFQISEQFEALGSSIGVQTAVIVGGIDMMAQSLALAK 133

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V+I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 134 KPHVIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 193

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L++P +  V++   T E ++  +V   +++  K + L  +L 
Sbjct: 194 FLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQYYVFIPSKF--KDSYLVYIL- 250

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG ++Q  R+  L+ FK     +++
Sbjct: 251 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMNQNKRLGSLNKFKAKARSVLL 310

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GK+ T V + D++    I
Sbjct: 311 ATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 370

Query: 361 EKLIEKKV 368
           E LI KK+
Sbjct: 371 EHLIGKKL 378


>gi|150864695|ref|XP_001383630.2| nucleolar DEAD-box protein required for synthesis of 60S ribosomal
           subunits [Scheffersomyces stipitis CBS 6054]
 gi|149385951|gb|ABN65601.2| nucleolar DEAD-box protein required for synthesis of 60S ribosomal
           subunits [Scheffersomyces stipitis CBS 6054]
          Length = 672

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 152/398 (38%), Positives = 232/398 (58%), Gaps = 19/398 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  V+  +   GY KP+PIQ  +IP+ L   D+   A TG+GKTA++++P++  
Sbjct: 161 FQTLQLSRPVLKGLSQLGYTKPSPIQSASIPIALLGRDIVAGAVTGSGKTAAYMIPIIER 220

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           L    ++V   R ++L PTRELA QV D  +K G+  N L   L +GG+    Q ++L+ 
Sbjct: 221 LLYKPSKVASTRVIVLTPTRELAIQVGDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKS 280

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQ 179
             DV+I TPGR++DH  N     ++++E+LVIDEADRMLD GF   +  I SL+P   RQ
Sbjct: 281 RPDVVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQVELTEILSLIPKNKRQ 340

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  ++Q + +  LQ P RI ++ P + A  +   FV    +   K ALL QLL
Sbjct: 341 TLLFSATMNTKIQDLIQLSLQRPVRIMIDPPKTAATKLTQEFVRIRKRDHLKPALLFQLL 400

Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  D  +    ++F ++K++   L   L   G  V  +HG++ Q  R+  +++FK+  + 
Sbjct: 401 KKLDPAQQSRIVVFVSRKESAHKLRIVLGLLGMKVSELHGSLTQEQRLNNVNDFKKLIVP 460

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA------- 350
           +++ +DLAARGLDIP +  V N+D+P   E Y+HR+GRT RAGR G + + V        
Sbjct: 461 VLICTDLAARGLDIPKIEIVINYDMPKSHEVYLHRVGRTARAGRDGTSISFVGESTSDRN 520

Query: 351 --KEDIKHIDAIE---KLIEKKVDWLNGDLSSLNPPLE 383
             K+ IK ++  E   K + + +DW+  D+  LN  +E
Sbjct: 521 IVKDAIKSLEGGEVKGKAVSRNIDWV--DVEQLNKIVE 556


>gi|226949308|ref|YP_002804399.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A2 str. Kyoto]
 gi|226844168|gb|ACO86834.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 376

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 146/368 (39%), Positives = 220/368 (59%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+LGLS  ++  +     ++PTPIQ ++I  +   +DV   AQTGTGKT +F+LPM 
Sbjct: 2   IKFAELGLSDSIIDVLKKQRIIEPTPIQEESIMFIKNGNDVIAEAQTGTGKTLAFLLPMF 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E     +   + LI+ PTRELA Q+ +   K  +  +L +    GG    +Q KKL+
Sbjct: 62  ---ENISPDINAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH NR  L   +++ LV+DEAD ML MGF   +++I    P  RQT
Sbjct: 119 NNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++   +++P+ I +     T + I+   + T  +  +K   L ++L 
Sbjct: 179 LCFSATMNSEVKKLAYKNMRDPRLIIIEKEEVTLKNIKQVLIETTDR--RKQEDLCKILD 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     IIFC  K+ V  L  +L K+G++   +HG+I Q  R +I+ +FK   IQ ++
Sbjct: 237 EENPFM-AIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLI 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HVFN+D+P  AE+YIHRIGRTGRAG  G  F  VA +D + +  I
Sbjct: 296 ATDVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLSII 355

Query: 361 EKLIEKKV 368
           E+ I+ K+
Sbjct: 356 EREIKFKI 363


>gi|227497408|ref|ZP_03927640.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
 gi|226833084|gb|EEH65467.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
          Length = 557

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 134/370 (36%), Positives = 210/370 (56%), Gaps = 9/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD G+ P++  A+ D G + P PIQ  T+P+ L   DV G A+TGTGKT  F +P+L  
Sbjct: 62  FADFGVEPEISQALADKGIIHPFPIQALTLPVALDGRDVIGQAKTGTGKTLGFGIPLLMD 121

Query: 63  L----EKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                E+G         P+ L++ PTRELA QVA    +      + +  + GG  +E Q
Sbjct: 122 TLGPGEEGWDEDPASGSPQALVVLPTRELAKQVATELAQAAAKRTVRIVQVYGGRAYEPQ 181

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + LE+GA+V++ TPGR++D   RG L + ++  +V+DEAD MLD+GF+P ++ I +   
Sbjct: 182 IEALEKGAEVVVGTPGRLIDLMERGVLSLEHVTTVVLDEADEMLDLGFLPDVEKILARTR 241

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234
             RQT+LFSATM   +  ++  ++  P  I    P   + T+       Y  ++  K  +
Sbjct: 242 PDRQTMLFSATMPGAVVALARRYMSKPTHIRAQDPGDESMTVTSVKQVVYRTHALNKVEV 301

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + ++LQ++   +  IIF   K+    +   L  +GF+  A+HG++ Q +R + L  F+ G
Sbjct: 302 VSRILQARGRGRT-IIFTRTKRTAARVAEDLGSRGFATAALHGDLGQGAREQALRAFRHG 360

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+  P   + Y+HRIGRTGRAG  G A T V  +D+
Sbjct: 361 KVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGHSGTAVTFVDWDDV 420

Query: 355 KHIDAIEKLI 364
                I K +
Sbjct: 421 PRWRLIAKAL 430


>gi|161486737|ref|YP_234164.2| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. syringae
           B728a]
          Length = 483

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 96  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 155

Query: 63  LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L +        +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 156 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 215

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 216 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 275

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T+++  +++ +  +P  +E+ + +  ++ +E    A     + K  LL
Sbjct: 276 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 333

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 334 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 392

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 393 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 452

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 453 QLPAIEEKLGRKI 465


>gi|62897439|dbj|BAD96660.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 variant [Homo
           sapiens]
          Length = 448

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 221/368 (60%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 19  FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 77

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 78  ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 134

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  + P  R+T
Sbjct: 135 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVNPRDRKT 194

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++  ++   +++  K   L  +L 
Sbjct: 195 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDTYLVYIL- 251

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 252 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 311

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 312 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 371

Query: 361 EKLIEKKV 368
           E LI KK+
Sbjct: 372 EHLIGKKL 379


>gi|217033461|ref|ZP_03438891.1| hypothetical protein HP9810_1g75 [Helicobacter pylori 98-10]
 gi|216944166|gb|EEC23594.1| hypothetical protein HP9810_1g75 [Helicobacter pylori 98-10]
          Length = 492

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 82  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +   + T   I   F        ++   + +LL +Q
Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 256 -APKKSIVFMRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDIGGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374

Query: 363 LIEKKVDWL 371
            I+ +++  
Sbjct: 375 EIDSEIELF 383


>gi|207091782|ref|ZP_03239569.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 492

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 213/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 82  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +     T   I   F        ++   + +LL +Q
Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSDITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDIGGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374

Query: 363 LIEKKVDWL 371
            I+ +++  
Sbjct: 375 EIDSEIELF 383


>gi|153938593|ref|YP_001391335.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum F str.
           Langeland]
 gi|152934489|gb|ABS39987.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. Langeland]
 gi|295319364|gb|ADF99741.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. 230613]
          Length = 376

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 147/368 (39%), Positives = 220/368 (59%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS  ++  +     ++PTPIQ ++I L+   +DV   AQTGTGKT +F+LPM 
Sbjct: 2   IKFEELGLSDSIIDVLKKQRIIEPTPIQEESIMLIKNGNDVIAEAQTGTGKTLAFLLPMF 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E     +   + LI+ PTRELA Q+ +   K  +  +L +    GG    +Q KKL+
Sbjct: 62  ---ENISPDINAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH NR  L   +++ LV+DEAD ML MGF   +++I    P  RQT
Sbjct: 119 NNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++   +++PK I +     T + I+   + T  +  +K   L ++L 
Sbjct: 179 LCFSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNIKQVLIETTDR--RKQEDLCKILD 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     IIFC  K+ V  L  +L K+G++   +HG+I Q  R +I+ +FK   IQ ++
Sbjct: 237 EENPFM-AIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLI 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HVFN+D+P  AE+YIHRIGRTGRAG  G  F  VA +D + +  I
Sbjct: 296 ATDVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLGMI 355

Query: 361 EKLIEKKV 368
           E+ I+ K+
Sbjct: 356 EREIKFKI 363


>gi|124430514|ref|NP_001074450.1| probable ATP-dependent RNA helicase DDX23 [Mus musculus]
 gi|148672229|gb|EDL04176.1| mCG18410, isoform CRA_a [Mus musculus]
          Length = 819

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 392 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 451

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      ++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q 
Sbjct: 452 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 511

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 512 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 571

Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           +                          RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 572 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 631

Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
               E +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK 
Sbjct: 632 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 686

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G++ C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+
Sbjct: 687 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 746

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHRIGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     A
Sbjct: 747 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 800

Query: 389 QHN 391
           QH 
Sbjct: 801 QHK 803


>gi|115454875|ref|NP_001051038.1| Os03g0708600 [Oryza sativa Japonica Group]
 gi|75320262|sp|Q53RK8|RH21_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 21
 gi|62733557|gb|AAX95674.1| DEAD/DEAH box helicase, putative [Oryza sativa Japonica Group]
 gi|108710689|gb|ABF98484.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed
           [Oryza sativa Japonica Group]
 gi|108710690|gb|ABF98485.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed
           [Oryza sativa Japonica Group]
 gi|108710691|gb|ABF98486.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed
           [Oryza sativa Japonica Group]
 gi|113549509|dbj|BAF12952.1| Os03g0708600 [Oryza sativa Japonica Group]
 gi|125545447|gb|EAY91586.1| hypothetical protein OsI_13221 [Oryza sativa Indica Group]
 gi|125587655|gb|EAZ28319.1| hypothetical protein OsJ_12293 [Oryza sativa Japonica Group]
 gi|215697317|dbj|BAG91311.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 736

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 212/373 (56%), Gaps = 25/373 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +++  L  +++ AV  AGY +P+PIQ+ +IPL LQ+ DV GIA+TG+GKTA+FVLPML+ 
Sbjct: 317 WSESKLGTELLRAVEKAGYKEPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPMLSY 376

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + +            P  +++ PTRELA Q+ +   K+     + V  ++GG   E Q  
Sbjct: 377 ITRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQGF 436

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           K+ +G +V+I TPGR+LD   R   ++N    +V+DEADRM+DMGF P +  +   +P +
Sbjct: 437 KIRQGCEVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 496

Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
                            R T +FSATM   +++++  +L+NP  + + T     + I   
Sbjct: 497 NLKPENEDEELDAKTIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQN 556

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
            + T  + S+K + LQ++L      K  I+FCN KK+       L+K GF V  +HG   
Sbjct: 557 VIMT--KESEKMSRLQKILTDLGD-KPAIVFCNTKKSADARAKDLDKAGFRVTTLHGGKS 613

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q  R   L  F+     ++VA+D+A RG+DIPDV HV N+++P+  + Y HRIGRTGRAG
Sbjct: 614 QEQRETSLDGFRNRRFTVLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGRAG 673

Query: 341 RHGKAFTLVAKED 353
           + G A + +  E+
Sbjct: 674 KKGLATSFLTLEN 686


>gi|162533080|ref|NP_791083.3| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|32363284|sp|Q887N8|RHLB_PSESM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|28851702|gb|AAO54778.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 397

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 10  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 69

Query: 63  LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L +        +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 70  LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 129

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 130 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 189

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T+++  +++ +  +P  +E+ + +  ++ +E    A     + K  LL
Sbjct: 190 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 248 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 307 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 366

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 367 QLPAIEEKLGRKI 379


>gi|126344320|ref|XP_001381629.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           [Monodelphis domestica]
          Length = 818

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 391 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 450

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      ++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q 
Sbjct: 451 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 510

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 511 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 570

Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           +                          RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 571 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 630

Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
               E +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK 
Sbjct: 631 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 685

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G++ C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+
Sbjct: 686 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 745

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHRIGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     A
Sbjct: 746 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 799

Query: 389 QHN 391
           QH 
Sbjct: 800 QHK 802


>gi|110834556|ref|YP_693415.1| DEAD-box ATP dependent DNA helicase [Alcanivorax borkumensis SK2]
 gi|110647667|emb|CAL17143.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax
           borkumensis SK2]
          Length = 551

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 147/371 (39%), Positives = 223/371 (60%), Gaps = 12/371 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   ++ A+   G+ +P+PIQ + IPL+L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FASLGLPEVLLTAIARQGFEQPSPIQAQAIPLLLDGHDLLGQAQTGTGKTAAFALPLLAR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     +R P+ LIL PTRELA QVA   E++ K+   L V  + GG  +  Q K L  
Sbjct: 68  LDPS---LREPQMLILAPTRELAIQVATACEEFAKDIKGLQVLPIYGGGEYRTQLKGLRG 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH +RG + +NN++ LV+DEAD ML MGFI  ++ +    P   Q  
Sbjct: 125 GAQVIVGTPGRVMDHMDRGSMKLNNLKALVLDEADEMLRMGFIDDVKWVLERTPDDCQLA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
           LFSATM   ++KV++  L+ PK + + N  ++T  TI   +  VA   +    C +L+  
Sbjct: 185 LFSATMPPVIRKVADQHLKQPKLVRIDNGGATTGTTIRQRYWPVAGLNKLDAVCRILEA- 243

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +  D +   ++F   K+  + L   L ++G    A++G+I Q+ R K +   K+    L
Sbjct: 244 -EEHDAV---LVFVRTKQATLELAEQLNRRGLRAEALNGDIPQQQREKTVQRLKDKRFDL 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+ ARGLD+P + HV N+D+P   E Y+HRIGRTGRAGR G A   VA+ +   + 
Sbjct: 300 LIATDVVARGLDVPRITHVVNYDMPGDPEAYVHRIGRTGRAGRQGDAILFVARREQHVLR 359

Query: 359 AIEKLIEKKVD 369
            IE++  + ++
Sbjct: 360 QIERITRQSIE 370


>gi|88860699|ref|ZP_01135336.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Pseudoalteromonas tunicata D2]
 gi|88817294|gb|EAR27112.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Pseudoalteromonas tunicata D2]
          Length = 431

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 139/371 (37%), Positives = 218/371 (58%), Gaps = 15/371 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGL P ++  + +  Y +PTPIQ + IP VL   D+   A TG+GKTA+F LPML 
Sbjct: 9   NFTELGLIPPLLARLTELEYQQPTPIQAQAIPSVLAGRDLIAGANTGSGKTATFALPMLQ 68

Query: 62  ILEK---GRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIP 111
            L     G+  V   +      L+L PTRELA QVA++ + Y  ++N  +    + GG+ 
Sbjct: 69  QLYLQQQGKTSVATNKGNYVAGLVLVPTRELATQVANSIKSYAAHFNGAIKTVAVFGGVS 128

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
             AQ + L  G+D+++ TPGR+LD  +   + ++ +  LV+DEADRML +GF   +  + 
Sbjct: 129 VNAQMQALRGGSDIVVATPGRLLDLISSNAIKLDKVSTLVLDEADRMLGLGFTEELSQLL 188

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +L+P  +QTLLFSAT   ++Q ++++ L NP  I+V + S  +  ++  F         K
Sbjct: 189 ALMPAKKQTLLFSATFPLQVQSLTQSLLTNPVEIQVQS-SDASTVVQRVFTVNKG---AK 244

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL  L+ ++   +  +IF N K +  +L   LEK+G S    HG+  Q +R ++L  F
Sbjct: 245 TELLAHLI-TEHKWRQALIFVNAKNHCEHLAQKLEKRGISAKVFHGDKGQSARTRVLEEF 303

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G I +++A+D+AARGLDI  +  V N+++P    +Y+HRIGR+GRAG  G A +L+ +
Sbjct: 304 KAGEIDILIATDIAARGLDIEKLPVVINYNLPRSPADYMHRIGRSGRAGEVGLALSLIDQ 363

Query: 352 EDIKHIDAIEK 362
           +D  H   IEK
Sbjct: 364 DDYHHFSIIEK 374


>gi|261337192|ref|NP_001100263.2| probable ATP-dependent RNA helicase DDX23 [Rattus norvegicus]
 gi|149032134|gb|EDL87046.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 (predicted), isoform
           CRA_b [Rattus norvegicus]
          Length = 819

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 392 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 451

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      ++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q 
Sbjct: 452 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 511

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 512 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 571

Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           +                          RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 572 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 631

Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
               E +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK 
Sbjct: 632 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 686

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G++ C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+
Sbjct: 687 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 746

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHRIGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     A
Sbjct: 747 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 800

Query: 389 QHN 391
           QH 
Sbjct: 801 QHK 803


>gi|258622745|ref|ZP_05717763.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
 gi|258584933|gb|EEW09664.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
          Length = 460

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 142/368 (38%), Positives = 224/368 (60%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P+++  +   G+   TPIQ +++P +L   DV G  +TG+GKTA+F L +L+ 
Sbjct: 6   FAALNLKPELLANLETMGFATMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLSN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+    L+L PTRELA QVA +    G+  +N+ V  L GG+P   Q   LE 
Sbjct: 66  LNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRIIHNIKVLTLCGGMPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH ++ ++ ++ +  LV+DEADRML+MGF   ++ I +  P  RQTL
Sbjct: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++++  +N   I+V     T+ +I   F       ++  AL   LL  
Sbjct: 183 LFSATYPASIEQIAQSVTRNAMMIKVAATHDTS-SIRQYFYKVDGSAARDEALEALLLHH 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q T  + ++FCN K+ V N+  +L + GFSV  +HG+++QR R + L  F   +I ++VA
Sbjct: 242 QPT--SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFN+D+    E ++HRIGRTGRAG  G AF+  +  +   +  I+
Sbjct: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359

Query: 362 KLIEKKVD 369
           + ++  ++
Sbjct: 360 EYMDIAIE 367


>gi|160915730|ref|ZP_02077938.1| hypothetical protein EUBDOL_01739 [Eubacterium dolichum DSM 3991]
 gi|158432206|gb|EDP10495.1| hypothetical protein EUBDOL_01739 [Eubacterium dolichum DSM 3991]
          Length = 572

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 138/351 (39%), Positives = 213/351 (60%), Gaps = 9/351 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L +S  ++ AV + GY + T IQ K IP +++  DV G + TGTGKTA+F +P + +
Sbjct: 4   FNELHISEAILRAVSEMGYEQATEIQAKAIPYIMEGKDVLGRSNTGTGKTAAFGIPAIEM 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++    + +    LI+ PTREL  QVA    K+ K    + +  + GG P E Q + L+R
Sbjct: 64  VQ---PQDKYANALIICPTRELVTQVAMELRKFSKYKEGVKIVPIYGGQPIERQIQLLKR 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--Q 179
           G  +++ TPGRI+DH  R  L +++I ++++DEAD ML+MGF   I+ I SL+P  R  Q
Sbjct: 121 GCGIVVGTPGRIMDHLRRRTLKLSDIRMVILDEADEMLNMGFKEDIEEILSLMPSERSYQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT   E+ ++++ F  +P  +E+ +   T +T+E  +        KK   L+ LL
Sbjct: 181 TILFSATWPSEIMRIAKEFQNDPVTVEIKSAQRTIDTVEQLYYEV--PRGKKANALRVLL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D  +  +IF N KK V  L   L K     CA+HG++ Q  R +++  F+ G++ ++
Sbjct: 239 NHYDP-ELCMIFANTKKMVDELQGELNKHDIKACALHGDMKQEFRSRVMEQFRSGSMPIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           +A+D+AARG+D+ DV  V NFD+P   E YIHRIGRTGRAG+ G A TL++
Sbjct: 298 IATDVAARGIDVDDVDLVINFDIPQDNEYYIHRIGRTGRAGKKGLAITLIS 348


>gi|37528482|ref|NP_931827.1| ATP-dependent RNA helicase RhlB [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|39931722|sp|Q7MYL2|RHLB_PHOLL RecName: Full=ATP-dependent RNA helicase rhlB
 gi|36787920|emb|CAE17037.1| ATP-dependent RNA helicase RhlB [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 428

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 157/421 (37%), Positives = 236/421 (56%), Gaps = 15/421 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F+D  L PKV+ A+ + G+   TPIQ  T+P  ++  DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVIEALDNKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKTLAFLASAFHY 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT       +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLTHPAAEERQTNQPRALIMAPTRELAVQIYSDAEDLAQATGLKMGLAYGGDGYDKQLKI 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
           LE G D+LI T GR++D+  +G + +N ++++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYTKQGHINLNAVQVVVLDEADRMYDLGFIKDIRWLFRRMPPVN 190

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
            R  LLFSAT++  +++++   + + + IEV     T   I E  F   Y    +K  LL
Sbjct: 191 ERMNLLFSATLSYRVRELAFEQMNHAEYIEVEPLQKTGHRIREELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q LL+ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLLE-EEWPDRCIIFANTKHRCEDIWAHLAADGHRVGLLTGDVAQKKRLRILEEFSNGN 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 IDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKK--VDWLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           ++ AIE  I+    V   N    L  L  P  +      NH R+NN   + +T  + RK+
Sbjct: 367 NLPAIEDYIQHSIPVSKYNSQALLKDLPAPKRRYRSRSGNHQRRNNLSHRNNTPRNNRKR 426

Query: 412 N 412
           +
Sbjct: 427 S 427


>gi|116054184|ref|YP_788628.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254243551|ref|ZP_04936873.1| RNA helicase DbpA [Pseudomonas aeruginosa 2192]
 gi|296386953|ref|ZP_06876452.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAb1]
 gi|313111919|ref|ZP_07797709.1| RNA helicase DbpA [Pseudomonas aeruginosa 39016]
 gi|115589405|gb|ABJ15420.1| RNA helicase DbpA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126196929|gb|EAZ60992.1| RNA helicase DbpA [Pseudomonas aeruginosa 2192]
 gi|310884211|gb|EFQ42805.1| RNA helicase DbpA [Pseudomonas aeruginosa 39016]
          Length = 458

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 147/392 (37%), Positives = 226/392 (57%), Gaps = 13/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LS  ++  +   GY + TPIQ +++PL+LQ HD+   A+TG+GKTA+F L +L+ 
Sbjct: 6   FSSLPLSADLLANLDSLGYREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLALLSP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L     R    + L+L PTRELA QVA    +  +   N+ V  L GG+P+  Q   LE 
Sbjct: 66  LNP---RYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI +H  +G L+++ +  LV+DEADRMLDMGF   I  I   +P  RQTL
Sbjct: 123 GAHVVVGTPGRIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPERRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D ++K+++ F+++P++++V +  + ++  +  F     Q       L Q  + 
Sbjct: 183 LFSATYPDGIEKLAKTFMRDPRQVKVESLHADSQIEQRFFEIDPKQRMDAVVRLLQHFRP 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q      + FC  ++    L  +L+ Q  S  A+HG+++QR R ++L+ F   +  ++VA
Sbjct: 243 QSC----VAFCQTRQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++    E +IHRIGR+GRAG  G A +LVA  +     AIE
Sbjct: 299 TDVAARGLDIAALETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIE 358

Query: 362 KLIEKKVDW-----LNGDLSSLNPPLEKIDIA 388
            L ++ + W     L      L PP+  + IA
Sbjct: 359 DLQKQPLAWYALGQLKASPEPLLPPMSTLCIA 390


>gi|66522071|ref|XP_624210.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Apis mellifera]
          Length = 772

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 141/356 (39%), Positives = 209/356 (58%), Gaps = 8/356 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G    ++ A+    Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 257 FGHFGFDDALIKAIRKNEYTQPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFIWPMLVH 316

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R       P  LIL PTREL+ Q+     K+GK YN+ V    GG     Q+K LE
Sbjct: 317 IMDQRELKEGDGPIGLILAPTRELSQQIYQEARKFGKVYNVQVCCCYGGGSKWEQSKALE 376

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA++++ TPGRI+D        +  +  LV+DEADRM DMGF P +++I + V   RQT
Sbjct: 377 GGAEIVVATPGRIIDLVKMKATNLTRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQT 436

Query: 181 LLFSATMTDELQKVSENFLQNPKRI-EVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT    ++K++ + L +P RI + +   + A+  +H  V       K   LLQ L+
Sbjct: 437 LLFSATFKKRVEKLARDVLTDPVRIVQGDVGEANADVTQHVIVFNNNPTGKWTWLLQNLI 496

Query: 240 Q--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  S  ++   +IF  +K N   L ++L+ + F V  +HG++DQ  R K+++ FK+  + 
Sbjct: 497 EFLSAGSL---LIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQIERNKVITAFKKKEVS 553

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            +VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TLV ++D
Sbjct: 554 TLVATDVAARGLDIPHIRTVLNYDVARDIDTHTHRIGRTGRAGEKGTAYTLVTEKD 609


>gi|256419120|ref|YP_003119773.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256034028|gb|ACU57572.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 414

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 134/376 (35%), Positives = 230/376 (61%), Gaps = 5/376 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    +S ++  ++ + G+ +PT IQ K IP +L+  DV  IAQTGTGKTA+F +P+L
Sbjct: 1   MKFEQYRISEEIKRSLEELGFKRPTDIQFKAIPSILKGDDVLAIAQTGTGKTAAFAIPVL 60

Query: 61  TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L++   R      R +++ PTRELA Q+++ FE+  K   L +  L GG+    Q KK
Sbjct: 61  HKLQQYHPRKTKGEVRCVVMVPTRELAVQISEVFERLAKYTKLNILGLHGGVDQAPQLKK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVLI TPGR+ D  ++G + ++   IL++DEAD MLD+GFI  I+++   +P   
Sbjct: 121 LAQGVDVLIATPGRMFDLISQGFIDLSQTGILILDEADHMLDLGFIRDIRDVLKHLPRRH 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSAT+ ++++ ++ + + NP RI+++     ++ ++H     Y     K   L++L
Sbjct: 181 QTLFFSATIDEDIKDLAYSVVNNPIRIQISPQDPVSKNVQHA--VAYVGMDDKRFFLERL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++     K  ++F   K     +  ++E+ G     +HG  +Q +R++++  FK+G I+L
Sbjct: 239 VKEFPENKI-LVFVRTKVRAERVAAAMERVGIKSLTMHGGKEQDNRLQVMDEFKKGDIKL 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +D+ ARG+DIPDV +V N+D+P+  ENY+HR+GRTGR  + G+A +  + E+   +D
Sbjct: 298 LITTDVNARGIDIPDVEYVVNYDLPDVPENYVHRVGRTGRGVKKGQAVSFCSDEEKPVLD 357

Query: 359 AIEKLIEKKVDWLNGD 374
           AI++ + K++  +  D
Sbjct: 358 AIQQYLGKEITVMKID 373


>gi|237799853|ref|ZP_04588314.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022708|gb|EGI02765.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 484

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 222/373 (59%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 97  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 156

Query: 63  LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L +        +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 157 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 216

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 217 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 276

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T+++  +++ +   P  +E+ + +  ++ +E    A     + K  LL
Sbjct: 277 GERQTLLFSATFTEDVMNLAKQWTTEPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 334

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 335 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 393

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 394 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 453

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 454 QLPAIEEKLGRKI 466


>gi|226506900|ref|NP_001142117.1| hypothetical protein LOC100274281 [Zea mays]
 gi|194704910|gb|ACF86539.1| unknown [Zea mays]
 gi|194707190|gb|ACF87679.1| unknown [Zea mays]
          Length = 494

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 143/426 (33%), Positives = 231/426 (54%), Gaps = 34/426 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+G    V+  +  AG+V+PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP + 
Sbjct: 92  EFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIV 151

Query: 62  ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                 IL  G      P  L+L PTRELA Q+     K+G +  +    + GG+P   Q
Sbjct: 152 HVNAQPILSPGDG----PIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQ 207

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L++G +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S + 
Sbjct: 208 VRDLQKGVEIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIR 267

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQ-YSKKC 232
             RQTL +SAT   E+++++ NFL +P ++ + +    A    ++H  + + +Q Y+K  
Sbjct: 268 PDRQTLYWSATWPKEVEQLARNFLFDPYKVTIGSEDLKANHAIVQHVEILSESQKYNKLV 327

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL+ ++     +    IF + KK        L   G+   +IHG+  Q  R  +LS FK
Sbjct: 328 NLLEDIMDGSRIL----IFMDTKKGCDQTTRQLRMDGWPALSIHGDKSQAERDWVLSEFK 383

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +M A+D+AARGLD+ DV +V N+D P   E+Y+HRIGRTGRAG  G A+T     
Sbjct: 384 SGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 443

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           + +    +  ++E+    ++ +L+++                +  P P  S+G+  R + 
Sbjct: 444 NARFAKELINILEEAGQKVSSELAAMG---------------RGAPPP--SSGYRDRYRG 486

Query: 413 YSSQKS 418
           Y   +S
Sbjct: 487 YGGGRS 492


>gi|91792106|ref|YP_561757.1| ATP-dependent RNA helicase SrmB [Shewanella denitrificans OS217]
 gi|91714108|gb|ABE54034.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 411

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 221/368 (60%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L   ++ ++   G+  PT IQ +TIPL +++ D+   A TGTGKTASF+LP L
Sbjct: 1   MLFEDFHLDHSLLDSLKAMGHNTPTTIQQQTIPLAMEQEDILAKAPTGTGKTASFLLPAL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +++  R      R L+L PTRELA+Q+         +  L ++++ GG+P+  Q + L
Sbjct: 61  QHLIDFPRRFDGQARVLVLTPTRELASQIHRYACHLATDLGLDISIVTGGVPYGPQEEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D++I TPGR++++ ++ K     +EI+VIDEADRMLDMGF   ++ I       +Q
Sbjct: 121 AGNVDIMIATPGRLMEYLDKNKFDATEVEIMVIDEADRMLDMGFSSVVKTIAIEAQGCKQ 180

Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            +LFSAT+    +Q+ +   L +P  ++V  P S    I H ++      + K ALL  L
Sbjct: 181 KMLFSATLEGGGVQRFARELLDDPVTVDVEAPRSEKAKI-HQWIHLADDQTHKFALLCNL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ Q+++K  I+F   ++ V +L   L K+G S   + G+++Q+ R + L  F +G + +
Sbjct: 240 LR-QESVKRTIVFVKTREVVASLEGLLLKEGISCAFMRGDMEQKKRFQALGRFTKGEVDI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI D+ HV N+D+P  A+ Y+HRIGRTGRAG  G A +LV   D++ + 
Sbjct: 299 LLATDVAARGIDIDDITHVINYDMPRSADAYVHRIGRTGRAGAKGTAISLVEAHDMRIVS 358

Query: 359 AIEKLIEK 366
            IE+ IE+
Sbjct: 359 KIERYIEQ 366


>gi|262163925|ref|ZP_06031664.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus VM223]
 gi|262027453|gb|EEY46119.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus VM223]
          Length = 416

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 215/368 (58%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADL L P ++ A+ + G+ +PT +Q + IP  L   DV   A TGTGKTA+F +P L  
Sbjct: 5   FADLELDPVLLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIPALQY 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +    R LIL PTRELA QVA+  +   KN  L +  + GG+ ++     L  
Sbjct: 65  LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L++ +  +     IE L++DEADRMLDMGF P +  +++   + +QTL
Sbjct: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSAECRWRKQTL 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+    ++  + + L+NP  I+   P    + I   +         K  LL+++L 
Sbjct: 185 LFSATLEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWY-HRADDMPHKVELLKKILT 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   +  I+F   ++ + +L   LEK       I G + Q  R   ++ F+EG++ +++
Sbjct: 244 EQ--AERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMQQDRRNNAITRFREGSVNILL 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+PD+ HV NFD+P  A+ Y+HRIGRTGRAG+ G A +LV   D   +  +
Sbjct: 302 ATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARV 361

Query: 361 EKLIEKKV 368
           E+ I+++V
Sbjct: 362 ERYIKEEV 369


>gi|302690998|ref|XP_003035178.1| hypothetical protein SCHCODRAFT_14350 [Schizophyllum commune H4-8]
 gi|300108874|gb|EFJ00276.1| hypothetical protein SCHCODRAFT_14350 [Schizophyllum commune H4-8]
          Length = 449

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 152/416 (36%), Positives = 229/416 (55%), Gaps = 17/416 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   ++ A+    +  PT IQ + +P  L+  D+ G+A TG+GKTA+F LP+L  
Sbjct: 16  FKSLGLIDPLLEALDKMSFKAPTEIQAQALPHALEGRDIIGVASTGSGKTAAFALPILQK 75

Query: 63  LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L         P+ L   +L PTRELA Q++  FE  G    +  A+++GG    AQ   L
Sbjct: 76  LWDD------PKGLFACVLAPTRELAYQISQQFEALGSAMGVRCAVIVGGTDIMAQKVAL 129

Query: 120 ERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +++ TPGR+ DH  + K   +  I+ LV+DEADR+LDM F P I  I  ++P  R
Sbjct: 130 AKRPHIVVATPGRLDDHLEKTKGFNLRGIKFLVLDEADRLLDMDFGPVIDKILKVIPKER 189

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            T LFSATMT ++ K+    L NP R+EVNT   T +++   ++       +K  LL  L
Sbjct: 190 TTYLFSATMTTKVAKLQRASLSNPVRVEVNTKYQTVDSLLQYYL--LMPLKEKDTLLVYL 247

Query: 239 LQS--QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             +  Q+++   IIF     +   L   L   GF    +HG + Q  R+  LS FK G  
Sbjct: 248 ANTLAQNSI---IIFTRTVNDAARLSIILRTLGFPAVPLHGQLSQSQRLGALSKFKSGGR 304

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GK+ T V + D++ 
Sbjct: 305 KVLVATDVASRGLDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRAGKSITFVTQYDVEF 364

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           I  IEK+I KK++    D   ++   E++  A    A +     +   G  +R++ 
Sbjct: 365 IMRIEKVIGKKMELWPTDEEEVSLLRERVGEAARVAAAEMRDQAKAGHGGKKRRRG 420


>gi|330969256|gb|EGH69322.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 483

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 222/373 (59%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 96  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 155

Query: 63  LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L +        +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 156 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 215

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           LE R  D+L+ TPGR+LD   RG + ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 216 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 275

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T+++  +++ +  +P  +E+ + +  ++ +E    A     + K  LL
Sbjct: 276 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 333

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 334 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 392

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 393 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 452

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 453 QLPAIEEKLGRKI 465


>gi|157371914|ref|YP_001479903.1| ATP-dependent RNA helicase SrmB [Serratia proteamaculans 568]
 gi|157323678|gb|ABV42775.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
          Length = 441

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 156/437 (35%), Positives = 243/437 (55%), Gaps = 16/437 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L L  +++ A+ D GY +PT IQ + IP  +   DV G A TGTGKTA+F+LP+L 
Sbjct: 5   NFSELELDERLINALRDKGYERPTAIQAEAIPPAMDGRDVLGSAPTGTGKTAAFLLPVLQ 64

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +   + +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ T GR+L +          +E L++DEADRMLDMGF   I+ I++   +  QT
Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRNQT 184

Query: 181 LLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+  D +++ +E  L+ P  +E +      + I   +         K ALL  LL
Sbjct: 185 LLFSATLEGDAIREFAERILKEPVEVEADPSRRERKKILQWYYRA-DDVVHKTALLVHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  K+ +IF  +++ V  L   L + G + C + G + Q  R + +    +G + ++
Sbjct: 244 KQPDVQKS-VIFVRKRERVHELAAWLREAGINTCYLEGEMVQAKRNEAVKRMMDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D  H+  
Sbjct: 303 VATDVAARGLDILDITHVFNFDMPRTADTYLHRIGRTGRAGRKGTAISLVEAHD--HL-- 358

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR---RKKNYSSQ 416
              L+ K   +LN  L +    +E++  +    + K+N  P K     R   ++KN    
Sbjct: 359 ---LLGKVGRYLNEPLKAR--VIEELRPSTKVPSEKSNGKPSKKVIAKRAADKEKNKEKA 413

Query: 417 KSHIPLKESEKISKLQQ 433
           K  +  ++++ + K +Q
Sbjct: 414 KVKVRHRDAKNVGKRRQ 430


>gi|114644988|ref|XP_509035.2| PREDICTED: probable ATP-dependent RNA helicase DDX23 isoform 2 [Pan
           troglodytes]
          Length = 820

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      ++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q 
Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572

Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           +                          RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 573 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632

Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
               E +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK 
Sbjct: 633 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G++ C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+
Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHRIGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     A
Sbjct: 748 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 801

Query: 389 QHN 391
           QH 
Sbjct: 802 QHK 804


>gi|2655202|gb|AAB87902.1| U5 snRNP 100 kD protein [Homo sapiens]
          Length = 820

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      ++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q 
Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572

Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           +                          RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 573 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632

Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
               E +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK 
Sbjct: 633 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G++ C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+
Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHRIGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     A
Sbjct: 748 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 801

Query: 389 QHN 391
           QH 
Sbjct: 802 QHK 804


>gi|291389065|ref|XP_002711079.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Oryctolagus
           cuniculus]
          Length = 820

 Score =  259 bits (661), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      ++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q 
Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572

Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           +                          RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 573 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632

Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
               E +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK 
Sbjct: 633 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G++ C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+
Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHRIGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     A
Sbjct: 748 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 801

Query: 389 QHN 391
           QH 
Sbjct: 802 QHK 804


>gi|304411815|ref|ZP_07393426.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307303417|ref|ZP_07583172.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304349675|gb|EFM14082.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306913777|gb|EFN44199.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 427

 Score =  259 bits (661), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 142/362 (39%), Positives = 205/362 (56%), Gaps = 10/362 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LG+   ++  + +  YV PTP+Q  TIP VL   DV   A TG+GKTA+F +P+L  L +
Sbjct: 14  LGIIAPLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVE 73

Query: 66  GRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKLE 120
            +   +     R L+L PTRELA QVAD+F  Y  + N  L +    GG+   AQ + L 
Sbjct: 74  AKTDDKTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQSLR 133

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GADVL+ TPGR+LD  +   + +N +  LV+DEADRML +GF   +  +   +P  +QT
Sbjct: 134 AGADVLVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQT 193

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  +E+++++   L  P  +E    S    TI    +        K ALL  L++
Sbjct: 194 LLFSATFPEEVRELTAKLLNAP--LEYQLQSEQESTIHQRVITV--NRPMKTALLAHLIK 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      +IF + K    +L   L K+G S    HG+  Q +R ++L  FK G I +++
Sbjct: 250 -EHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLI 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V NFD+P    +Y+HRIGR+GRAG  G A TL++ ED  H   I
Sbjct: 309 ATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGVI 368

Query: 361 EK 362
           EK
Sbjct: 369 EK 370


>gi|253582317|ref|ZP_04859540.1| ATP-dependent RNA helicase [Fusobacterium varium ATCC 27725]
 gi|251835856|gb|EES64394.1| ATP-dependent RNA helicase [Fusobacterium varium ATCC 27725]
          Length = 527

 Score =  259 bits (661), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 221/368 (60%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60
           +F  LGL  K + A+   GY KPTPIQ  TIP +L    D+ G AQTGTGKTA+F LP+L
Sbjct: 6   EFKKLGLGEKTIKALSKKGYEKPTPIQALTIPALLDGEKDIIGQAQTGTGKTAAFSLPIL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E G+    + + ++L PTRELA QVA+          + +  + GG   E Q ++L+
Sbjct: 66  ERFEPGK----VVQAIVLAPTRELAIQVAEEMNSLANGKKIRITPVYGGQSIEFQIRQLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TPGR++D  +R  + ++N++  ++DEAD ML+MGF+  ++ I       ++ 
Sbjct: 122 KGTDIIVGTPGRVMDLMDRKLIKLDNLKYFILDEADEMLNMGFLEDVEKILESTNDDKRM 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM +E+ KV++  +++ + + V T   T +  +  +   + +  K  AL + +  
Sbjct: 182 LFFSATMPNEILKVAKKHMRDYEVLAVKTRELTTDLTDQIYFEVHER-DKFEALCRIIDL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++D    GI+FC  K +V ++   L  +G+    +HG+I Q  R   L  FK   I ++V
Sbjct: 241 TKDFY--GIVFCRTKNDVNDVVGKLNDRGYDAEGLHGDISQNYREVTLKRFKAKKINVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV N+ +P  AE+Y+HRIGRTGRAG+ G A T +  ++ + +  I
Sbjct: 299 ATDVAARGIDVNDLSHVINYSIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 358

Query: 361 EKLIEKKV 368
           +K+++ ++
Sbjct: 359 QKIVKTEI 366


>gi|296211536|ref|XP_002752462.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like
           [Callithrix jacchus]
          Length = 820

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      ++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q 
Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572

Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           +                          RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 573 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632

Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
               E +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK 
Sbjct: 633 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G++ C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+
Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHRIGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     A
Sbjct: 748 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 801

Query: 389 QHN 391
           QH 
Sbjct: 802 QHK 804


>gi|88797378|ref|ZP_01112968.1| Superfamily II DNA and RNA helicase [Reinekea sp. MED297]
 gi|88780247|gb|EAR11432.1| Superfamily II DNA and RNA helicase [Reinekea sp. MED297]
          Length = 462

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 144/352 (40%), Positives = 211/352 (59%), Gaps = 7/352 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L P ++  +    Y   T IQ KT+PLVL   DV   A+TG+GKTA+F L +L  
Sbjct: 5   FSDLPLKPALLTNLNTLNYTAMTEIQQKTLPLVLDGQDVIAQAKTGSGKTAAFGLGVLQA 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L+  R R++   +LIL PTRELA QVA    K  +  +N+ +  L GG+PF  Q   L  
Sbjct: 65  LQVERFRIQ---SLILCPTRELADQVAQELRKLARAIHNIKILTLCGGMPFGPQIGSLAH 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI +H  +G L +++++ LV DEADRMLDMGF   I  I   VP  RQTL
Sbjct: 122 GAHIIVGTPGRIEEHLRKGTLKLDDVQTLVFDEADRMLDMGFQEVIDTIVDQVPAQRQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  DE+  +     +    ++V + +  A+ IE  F  T + +  +  + Q+LL +
Sbjct: 182 LFSATYPDEIDSLCARVTRKATLVQVES-AHQADVIEQRFYRTES-FDDRLQMSQRLLLN 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              M N +IFCN K+    +   L++ GF   A+HG+++QR R + L  F  G++ ++VA
Sbjct: 240 DKPM-NTLIFCNTKRETDEVADFLKQAGFDALALHGDMEQRQRNETLIRFANGSVSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +D+AARGLDI  +  V NF +    E + HRIGRTGRAG  G+A++  A+++
Sbjct: 299 TDVAARGLDIDKLDAVINFHIAKDPEVHTHRIGRTGRAGERGRAYSFFAEKE 350


>gi|257470192|ref|ZP_05634283.1| ATP-dependent RNA helicase [Fusobacterium ulcerans ATCC 49185]
 gi|317064408|ref|ZP_07928893.1| ATP-dependent RNA helicase [Fusobacterium ulcerans ATCC 49185]
 gi|313690084|gb|EFS26919.1| ATP-dependent RNA helicase [Fusobacterium ulcerans ATCC 49185]
          Length = 527

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 221/368 (60%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60
           +F  LGL  K + A+   GY KPTPIQ  TIP +L    D+ G AQTGTGKTA+F LP+L
Sbjct: 6   EFKKLGLGEKTIKALSKKGYEKPTPIQALTIPALLDGEKDIIGQAQTGTGKTAAFSLPIL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E G+    + + ++L PTRELA QVA+          + +  + GG   E Q ++L+
Sbjct: 66  ERFEPGK----VVQAIVLAPTRELAIQVAEEMNSLANGKKIRITPVYGGQSIEFQIRQLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TPGR++D  +R  + ++N++  ++DEAD ML+MGF+  ++ I       ++ 
Sbjct: 122 KGTDIIVGTPGRVMDLMDRKLIKLDNLKYFILDEADEMLNMGFLEDVEKILESTNDEKRM 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM +E+ KV++  +++ + + V T   T +  +  +   + +  K  AL + +  
Sbjct: 182 LFFSATMPNEILKVAKKHMRDYEVLAVKTRELTTDLTDQIYFEVH-ERDKFEALCRIIDL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++D    GI+FC  K +V ++   L  +G+    +HG+I Q  R   L  FK   I ++V
Sbjct: 241 TKDFY--GIVFCRTKNDVNDVVGKLNDRGYDAEGLHGDISQNYREVTLKRFKAKKINVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV N+ +P  AE+Y+HRIGRTGRAG+ G A T +  ++ + +  I
Sbjct: 299 ATDVAARGIDVNDLSHVINYSIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 358

Query: 361 EKLIEKKV 368
           +K+++ ++
Sbjct: 359 QKIVKTEI 366


>gi|193785886|dbj|BAG54673.1| unnamed protein product [Homo sapiens]
          Length = 800

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 373 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 432

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      ++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q 
Sbjct: 433 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 492

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 493 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 552

Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           +                          RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 553 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 612

Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
               E +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK 
Sbjct: 613 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 667

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G++ C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+
Sbjct: 668 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 727

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHRIGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     A
Sbjct: 728 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 781

Query: 389 QHN 391
           QH 
Sbjct: 782 QHK 784


>gi|87118170|ref|ZP_01074069.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
           sp. MED121]
 gi|86165804|gb|EAQ67070.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
           sp. MED121]
          Length = 459

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 134/373 (35%), Positives = 219/373 (58%), Gaps = 5/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+D G   +++ ++   G+   T IQ + IP  +   D+   ++TG+GKT ++++P L
Sbjct: 15  LQFSDFGFDARILQSLRHWGFDSATQIQAQAIPEAMAGRDLLASSKTGSGKTLAYLIPAL 74

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + + +A   +  R LIL PTRELA QV         +  L  AL++GG  F  Q K L
Sbjct: 75  HRVYRVKALSNKDARVLILVPTRELAKQVYSQLRLLVASSKLKTALILGGENFNDQIKDL 134

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TR 178
           ++    ++ TPGR++DH N+  + ++ +E+L++DEADRMLD+GF   ++ I        R
Sbjct: 135 QKDPQFIVATPGRLVDHLNQRNMFLDGLELLILDEADRMLDLGFADQLKQIDDAASHRLR 194

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL FSAT+ + E+  +++  L  P R+ +   +     I+  F         K A+L  
Sbjct: 195 QTLFFSATLDNAEVNDIAQRLLNEPSRVAIGAGTDVHSDIKQKFYLC-DHLDHKEAILTH 253

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+ Q+T+K GIIF   K + V L   LE++GF+  A++G++ Q +R K++ +F  G  Q
Sbjct: 254 VLE-QETIKQGIIFTATKLDTVRLASLLEEKGFTTQALNGDLTQSARNKVMDSFARGHFQ 312

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V++DLA+RGLDI +V HV NFD+P  +E Y+HR GRTGRAG  G AF+LV  +D  + 
Sbjct: 313 ILVSTDLASRGLDIANVTHVINFDIPKHSEEYVHRTGRTGRAGFQGDAFSLVGPKDWHNF 372

Query: 358 DAIEKLIEKKVDW 370
            A+E  + +   +
Sbjct: 373 KALETFLSRSFSF 385


>gi|73996608|ref|XP_851051.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 2 [Canis familiaris]
          Length = 820

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      ++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q 
Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572

Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           +                          RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 573 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632

Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
               E +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK 
Sbjct: 633 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G++ C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+
Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHRIGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     A
Sbjct: 748 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 801

Query: 389 QHN 391
           QH 
Sbjct: 802 QHK 804


>gi|15611302|ref|NP_222953.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori J99]
 gi|4154758|gb|AAD05818.1| ATP-DEPENDENT RNA HELICASE DEAD [Helicobacter pylori J99]
          Length = 491

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 140/369 (37%), Positives = 216/369 (58%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++  
Sbjct: 22  FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+         + L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 82  LKNNHTI----KALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +   + T   I   F        ++   + +LL +Q
Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K+ I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 256 APEKS-IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVF++ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 315 DVASRGLDISGVSHVFSYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374

Query: 363 LIEKKVDWL 371
            I+ +++  
Sbjct: 375 EIDSEIELF 383


>gi|262373548|ref|ZP_06066826.1| DEAD/DEAH box helicase [Acinetobacter junii SH205]
 gi|262311301|gb|EEY92387.1| DEAD/DEAH box helicase [Acinetobacter junii SH205]
          Length = 642

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 141/378 (37%), Positives = 227/378 (60%), Gaps = 15/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  L   +  A+   G+  PTP+Q + IP  L+  D+   +QTG+GKTA+F+LP L  
Sbjct: 5   FAEFSLHETLQQALEGLGFTSPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64

Query: 63  L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111
           L          E+ +A +  P  L+L PTRELA QV+ +   + ++   + +A ++GG+P
Sbjct: 65  LTGQETFVPFKERMKA-ITQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           F  Q ++L +GA V++ TPGR+LD  NR +L ++ +E L++DEADRMLD+GF   ++ I 
Sbjct: 124 FGKQIQQL-KGAQVIVATPGRLLDLVNRRQLKLDKVESLIVDEADRMLDLGFSEDLEAIG 182

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            L     QTL+FSAT  D + +++E  + +P+RI + T  ST   +      T   +  K
Sbjct: 183 ELAANRNQTLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTDVTQTLHWTDG-FEHK 241

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL   L S +++   ++F + +++   L   L + G SV A+HG + Q  R + L + 
Sbjct: 242 KKLLTHWL-SDESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 300

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL   
Sbjct: 301 REGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGQAITLATY 360

Query: 352 EDIKHIDAIEKLIEKKVD 369
            +   I A+E  ++ +++
Sbjct: 361 RERGKIRALEDYLDARLN 378


>gi|41327771|ref|NP_004809.2| probable ATP-dependent RNA helicase DDX23 [Homo sapiens]
 gi|160385708|sp|Q9BUQ8|DDX23_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX23; AltName:
           Full=100 kDa U5 snRNP-specific protein; AltName:
           Full=DEAD box protein 23; AltName: Full=PRP28 homolog;
           AltName: Full=U5-100kD
 gi|12803125|gb|AAH02366.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo sapiens]
 gi|119578415|gb|EAW58011.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, isoform CRA_b [Homo
           sapiens]
 gi|119578419|gb|EAW58015.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, isoform CRA_b [Homo
           sapiens]
 gi|123981044|gb|ABM82351.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [synthetic construct]
 gi|123995847|gb|ABM85525.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [synthetic construct]
 gi|189065458|dbj|BAG35297.1| unnamed protein product [Homo sapiens]
          Length = 820

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      ++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q 
Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572

Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           +                          RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 573 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632

Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
               E +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK 
Sbjct: 633 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G++ C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+
Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHRIGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     A
Sbjct: 748 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 801

Query: 389 QHN 391
           QH 
Sbjct: 802 QHK 804


>gi|227541917|ref|ZP_03971966.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227182360|gb|EEI63332.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 455

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 133/357 (37%), Positives = 212/357 (59%), Gaps = 8/357 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +LG++ ++  A+     V    IQ  T+P+ L+  D+ G A+TG GKT  F +P+L  
Sbjct: 10  FTELGVAQEITDALATQSIVDTFAIQALTLPIALEGRDLIGQARTGMGKTLGFGVPVLDR 69

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           I +          PR LI+ PTREL  QV ++  +   N  + V  + GG P+E Q K L
Sbjct: 70  IFDDADIEELDGTPRALIVVPTRELCVQVGEDLTRAAVNLPVRVTTIYGGTPYEEQEKAL 129

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D+++ TPGR++D +NRG+L ++ + ILV+DEAD MLD+GF+P I+ I + +    Q
Sbjct: 130 KDGTDLVVGTPGRLIDLYNRGELRLDTVRILVLDEADEMLDLGFLPAIEKIIAGITAEHQ 189

Query: 180 TLLFSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           T+LFSATM D +  ++  F+  P   R E++  + T  T +     ++     K A++ +
Sbjct: 190 TMLFSATMPDAILGLARGFMNKPVHIRAEMSGEAETNATTKQVVFKSHRM--DKVAVISR 247

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +LQ++   +  IIF   K++   +   L   GF V ++HG++ Q +R + L  F++G + 
Sbjct: 248 VLQARGRGRT-IIFVRTKRSAAEVARDLAGAGFQVASVHGDMSQSARERSLQGFRDGVVD 306

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           ++VA+D+AARG+DI DV HV N+  P+    Y+HRIGRTGRAG  G A TLV  +++
Sbjct: 307 ILVATDVAARGIDIDDVTHVINYQTPDDELTYVHRIGRTGRAGHTGTAVTLVGYDEL 363


>gi|73539745|ref|YP_294265.1| ATP-dependent RNA helicase DbpA [Ralstonia eutropha JMP134]
 gi|72117158|gb|AAZ59421.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Ralstonia eutropha JMP134]
          Length = 474

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 141/370 (38%), Positives = 211/370 (57%), Gaps = 8/370 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ L L+P  +  +   GY + TPIQ  ++PL L  HD+   A+TG+GKTA+F L +L 
Sbjct: 18  DFSTLPLAPATLATLAQLGYDEMTPIQAASLPLTLAGHDLIAQAKTGSGKTAAFALALLH 77

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120
            L+  R  V+    ++L PTRELA QV     +  +   N+ V  L GG P   Q   L 
Sbjct: 78  RLDARRFDVQ---AMVLCPTRELADQVTQEIRRLARAEENVKVLTLCGGSPMRPQVDSLV 134

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGRILDH +RG L ++ I  LV+DEADRMLDMGF   I  + S  P  RQT
Sbjct: 135 HGAHVVVGTPGRILDHIDRGSLELSAINTLVLDEADRMLDMGFFDDISYVASRCPRERQT 194

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    + K+S+ FL+ P+ +++     ++   ++ +    ++       L    +
Sbjct: 195 MLFSATYPAGIDKLSQKFLRKPQEVKLAEKHDSSSIRQYFYEVDESERLSAVGRLLDHFR 254

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+     FCN K    +L   L  QGF   A+HG+++QR R ++L  F  G+  ++V
Sbjct: 255 PASTLA----FCNTKARCRDLVDLLRGQGFQALALHGDLEQRDRDQVLVQFANGSCSVLV 310

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N ++    E +IHRIGRTGRAG  G AF+LV+ +++  +  +
Sbjct: 311 ATDVAARGLDIAQLEAVINVEITPDPEVHIHRIGRTGRAGEEGHAFSLVSMDEMGRVGNL 370

Query: 361 EKLIEKKVDW 370
           E+    + +W
Sbjct: 371 EQHHGGEFEW 380


>gi|168185001|ref|ZP_02619665.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|237795441|ref|YP_002862993.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           botulinum Ba4 str. 657]
 gi|182671947|gb|EDT83908.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|229262402|gb|ACQ53435.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Ba4 str. 657]
          Length = 376

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 147/366 (40%), Positives = 219/366 (59%), Gaps = 6/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++  +     ++PTPIQ ++I L+   +DV   AQTGTGKT +F+LPM   
Sbjct: 4   FEELGLSDSIIDVLKKQRIIEPTPIQEESIMLIKSGNDVIAEAQTGTGKTLAFLLPMF-- 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E     +   + LI+ PTRELA Q+ +   K  +  +L +    GG    +Q KKL+  
Sbjct: 62  -ENISPDIDAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLKNN 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++I TPGR+LDH NR  L   +++ LV+DEAD ML MGF   +++I    P  RQTL 
Sbjct: 121 IHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLC 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++K++   +++PK I +     T + I+   + T  +  +K   L ++L  +
Sbjct: 181 FSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNIKQVLIETTDR--RKQEDLCKILDEE 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     IIFC  K+ V  L  +L K+G++   +HG+I Q  R +I+ +FK   IQ ++A+
Sbjct: 239 NPFM-AIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HVFN+D+P  AE+YIHRIGRTGRAG  G  F  VA +D + +  IE+
Sbjct: 298 DVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLGMIER 357

Query: 363 LIEKKV 368
            I+ K+
Sbjct: 358 EIKFKI 363


>gi|38233323|ref|NP_939090.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38199582|emb|CAE49235.1| Putative ATP-dependent RNA helicase [Corynebacterium diphtheriae]
          Length = 436

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 133/355 (37%), Positives = 204/355 (57%), Gaps = 4/355 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG++ ++  A+   G  +   IQ  T+P+ L   D+ G A+TG GKT  F +P++  
Sbjct: 10  FVELGVAREITDALATVGVKRTFAIQELTLPIALDGRDLIGQARTGMGKTYGFGVPLIDR 69

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +        +   PR L++ PTRELA QV D+ +   +N  +TVA + GG P+E Q  +L
Sbjct: 70  VFDAADVAELDGTPRALVVVPTRELAHQVGDDLKLLSRNIPITVATIYGGRPYEEQIAQL 129

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G DV++ TPGR++D + RG L ++++ +LV+DEAD MLD+GF P I+ + + +    Q
Sbjct: 130 ESGVDVVVGTPGRLIDLYQRGNLALDHVAVLVLDEADEMLDLGFFPDIEKLLAALTHPHQ 189

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   +  ++  F+ +P  I      +         V   A    K A+  ++L
Sbjct: 190 TMLFSATMPGAVVTLARTFMHHPVHIRAEDTGAAQTHASTTQVIFQAHRMDKSAVTARIL 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q++   K  IIF   K+    L   L ++GF V  +HG++ Q +R   L  F+ G   ++
Sbjct: 250 QAEGRGKT-IIFARTKRTAAELADDLAQRGFRVAGVHGDLGQSAREASLDAFRTGKAHIL 308

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           VA+D+AARGLDI DV HV N+  P+    Y+HRIGRTGRAG  G A TLV  +++
Sbjct: 309 VATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGTAVTLVGYDEL 363


>gi|260770664|ref|ZP_05879595.1| ATP-dependent RNA helicase RhlB [Vibrio furnissii CIP 102972]
 gi|260614390|gb|EEX39578.1| ATP-dependent RNA helicase RhlB [Vibrio furnissii CIP 102972]
 gi|315178384|gb|ADT85298.1| ATP-dependent RNA helicase RhlB [Vibrio furnissii NCTC 11218]
          Length = 435

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 153/410 (37%), Positives = 230/410 (56%), Gaps = 11/410 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FAD GL P+VV  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADFGLHPQVVEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFHH 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT  E    +   PR +I+ PTRELA Q+ ++ E    +  +  AL  GG  ++ Q  K
Sbjct: 71  LLTTPEIEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLAK 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-- 176
           L+ G DVLI T GRI+D + +    +NNI+ +V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LQDGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
            R  +LFSAT++  +Q+++   + NP+ + V     T   I E  F   Y     K ALL
Sbjct: 191 DRLNMLFSATLSYRVQELAFEHMHNPEHVVVEPTQKTGHRIKEELF---YPSNEHKMALL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q LL+ ++     I+F N K     +   L   G  V  ++G++ Q+ R +IL  F +G 
Sbjct: 248 QTLLE-EEWPDRAIVFANTKHRCEQIWGHLAADGHRVGLLNGDVPQKKRERILEQFTKGE 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   
Sbjct: 307 LDVLVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAI 366

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           ++  IE+ IE  +     D S+L   L K    + +  R+ N   Q++ G
Sbjct: 367 NLPGIEEYIEHAIPTSEYDPSALLTDLPKALTMRSSQQRRTNTGGQRNNG 416


>gi|114644990|ref|XP_001159984.1| PREDICTED: probable ATP-dependent RNA helicase DDX23 isoform 1 [Pan
           troglodytes]
          Length = 800

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 373 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 432

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      ++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q 
Sbjct: 433 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 492

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 493 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 552

Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           +                          RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 553 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 612

Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
               E +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK 
Sbjct: 613 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 667

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G++ C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+
Sbjct: 668 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 727

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHRIGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     A
Sbjct: 728 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 781

Query: 389 QHN 391
           QH 
Sbjct: 782 QHK 784


>gi|109096393|ref|XP_001104339.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like isoform 5
           [Macaca mulatta]
          Length = 820

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      ++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q 
Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572

Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           +                          RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 573 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632

Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
               E +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK 
Sbjct: 633 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G++ C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+
Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHRIGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     A
Sbjct: 748 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 801

Query: 389 QHN 391
           QH 
Sbjct: 802 QHK 804


>gi|127511701|ref|YP_001092898.1| ATP-dependent RNA helicase SrmB [Shewanella loihica PV-4]
 gi|126636996|gb|ABO22639.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 419

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 216/368 (58%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L   ++ ++   G++ PT IQ +TIPL L+  D+   A TGTGKTASF+LP L
Sbjct: 14  MQFEDFHLDDTLLESLKAMGHLAPTTIQQQTIPLALEHKDILARAPTGTGKTASFLLPAL 73

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R      R LIL PTRELA+QV            L +A++ GG+P+  Q + L
Sbjct: 74  QHLLDFPRRYSGQARVLILAPTRELASQVHRYASHLATGLGLDIAIITGGVPYAPQEQAL 133

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   D+L+ TPGR++++ ++      ++EILV+DEADRMLDMGF   +Q+I       + 
Sbjct: 134 KENIDILVATPGRLMEYLDKELFDAQSVEILVLDEADRMLDMGFSSAVQSIAIEAQQRKH 193

Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            +LFSAT+    + + +E  L NP  IE   P S    I H ++        K ALL  +
Sbjct: 194 NMLFSATLEGGGVSRFAEMLLTNPVTIETKPPRSEKAKI-HQWMHLADDKEHKFALLCDI 252

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ ++ +   I+F   ++ V +L   L++ G     + G+++Q++R + L  F +G + +
Sbjct: 253 LKREE-VSRAIVFVKTREVVASLEGQLQQAGIHCAFMRGDMEQKARFQALGRFTKGEVNV 311

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI  + HV NFD+P  A+ Y+HRIGRTGRAG  G A +LV   D++ + 
Sbjct: 312 LLATDVAARGIDIDGITHVINFDMPRSADTYVHRIGRTGRAGNKGTAISLVEAHDMRVVA 371

Query: 359 AIEKLIEK 366
            IE+ IE+
Sbjct: 372 KIERYIEQ 379


>gi|197294292|ref|YP_001798833.1| DEAD/DEAH box helicase-like [Candidatus Phytoplasma australiense]
 gi|171853619|emb|CAM11490.1| DEAD/DEAH box helicase-like [Candidatus Phytoplasma australiense]
          Length = 564

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 134/370 (36%), Positives = 226/370 (61%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L +  +   A+ +  +++ TPIQ   IP ++Q HDV G AQTGTGKT +F +P   I
Sbjct: 5   FEQLPILEQTKKALQELNFIEATPIQALVIPEIIQGHDVIGQAQTGTGKTFAFGIP---I 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +EK   ++   ++LIL PTREL  QV +  +K  + Y  + +A++ GG  +  Q + LE 
Sbjct: 62  IEKIDYKLSKTQSLILCPTRELTLQVYEELKKLLRYYPQIRIAVVFGGESYTKQFRALES 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR++DH  RGK+ ++ ++IL +DEAD ML MGF   ++ I   +P  RQT+
Sbjct: 122 KPHLIIATPGRVIDHIERGKIDLSALKILTLDEADEMLKMGFQEALETILKQIPEERQTV 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +++++  + +N K ++V         IE  +     ++ K   L++ L   
Sbjct: 182 LFSATLPPSIKQIASKYQKNTKILQVPVKKLAVNAIEQYYFLV-KEFDKNKLLVRLLDLK 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D   + I+F N KK+V  +   L+ +GF   A+HG++ Q  R  +++NF++G I++++A
Sbjct: 241 RDY--STILFANTKKDVDEITSFLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI D+  V N+D+P+  E Y+HRIGRTGRAG+ G A++ ++      +  +E
Sbjct: 299 TDVAARGIDISDIKMVVNYDLPHEDEVYVHRIGRTGRAGKKGLAYSFISPRKFSQLKKLE 358

Query: 362 KLIEKKVDWL 371
             +++KV +L
Sbjct: 359 YYLKEKVKFL 368


>gi|91228021|ref|ZP_01262106.1| ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
 gi|269964531|ref|ZP_06178770.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|91188250|gb|EAS74549.1| ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
 gi|269830658|gb|EEZ84878.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 439

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 146/382 (38%), Positives = 221/382 (57%), Gaps = 9/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FADLGL P+V+  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADLGLKPQVIEGLDKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT  E    +   PR +I+ PTRELA Q+ ++ E   ++  L  AL  GG  ++ Q  K
Sbjct: 71  LLTTPEHEGRKPTQPRAIIMAPTRELAIQIYNDAESLTESTGLKTALAYGGESYDKQLAK 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+LI T GRI+D + +    +NNI+ +V+DEADRM D+GFI  I+ +   +P  +
Sbjct: 131 LQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + L  LFSAT++  +Q+++   +  P+ + V     T   I+      Y     K ALLQ
Sbjct: 191 ERLNMLFSATLSYRVQELAFEHMNTPEHVVVEPEQKTGHRIQEELF--YPSNEDKMALLQ 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R KIL  F +G +
Sbjct: 249 TLIE-EEWPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDV 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   +
Sbjct: 308 DILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAVN 367

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
           + AIE+ IE  +     D S+L
Sbjct: 368 LPAIEEYIEHTIPVSEYDSSAL 389


>gi|90417199|ref|ZP_01225126.1| putative ATP-dependent RNA helicase DbpA [marine gamma
           proteobacterium HTCC2207]
 gi|90330975|gb|EAS46236.1| putative ATP-dependent RNA helicase DbpA [marine gamma
           proteobacterium HTCC2207]
          Length = 466

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 149/397 (37%), Positives = 227/397 (57%), Gaps = 19/397 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ L L+P +V  +   GY + TPIQ + +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 9   DFSSLDLNPALVDNLASLGYSEMTPIQAQALPSILASKDVIAKAKTGSGKTATFSLGLLN 68

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            L+  R RV+   TL+L PTRELA QVA    K  +  +N+ V  L GG+ F  Q   LE
Sbjct: 69  KLDVKRFRVQ---TLVLCPTRELADQVAAEIRKLARGIHNIKVLTLCGGVAFGPQVGSLE 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ DH  +  L ++N+  L++DEADRMLDMGF   + +I   +P  RQT
Sbjct: 126 HGAHIIVGTPGRVEDHLRKANLNLDNLTTLILDEADRMLDMGFQQALDDIVGYMPRQRQT 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCALLQQLL 239
           +LFSAT  +++ K+++  +++P  +EV    S+   +E  +     Q   +   LL Q  
Sbjct: 186 MLFSATYPEKIDKIAQRIMRSPVTVEVQDSHSSQSIVETLYQIDNDQSRIEAVRLLLQAH 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q + T+    IFCN K     + + L   G+   A+HG+++Q+ R + L+ F   ++ ++
Sbjct: 246 QPETTL----IFCNTKIETDRVANELRAVGYEASALHGDLEQKDRDQTLACFANRSVSVL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+ +    E + HRIGRTGRAG  G A +L  +++   ID 
Sbjct: 302 VATDVAARGLDIDALDMVINYQMAQELEVHTHRIGRTGRAGAQGIACSLYTQKETYKIDL 361

Query: 360 IEKLIEKKVDWLNGDLSSLN--------PPLEKIDIA 388
           +E  +E+K +   GDL  L         PP+  I I 
Sbjct: 362 LEDYLEQKFN--RGDLPHLELLREPVFYPPMVTIHIG 396


>gi|312959108|ref|ZP_07773627.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
 gi|311286878|gb|EFQ65440.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
          Length = 486

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 139/373 (37%), Positives = 222/373 (59%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  L+P+++ A+ D G+   TPIQ + +   L   D  G AQTGTGKTA+F++ ++T 
Sbjct: 99  FHDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQ 158

Query: 62  ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L+    + R    PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K 
Sbjct: 159 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKH 218

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           LE R  D+L+ TPGR+LD   RG + ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 219 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 278

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T+++  +++ +  +P  +E+   +  +E +E    A     + K  LL
Sbjct: 279 AERQTLLFSATFTEDVMNLAKQWTTDPSIVEIEALNVASENVEQHIYAVAG--ADKYKLL 336

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 337 YNLI-NDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 395

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 396 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSY 455

Query: 356 HIDAIEKLIEKKV 368
            + +IE L+ +K+
Sbjct: 456 QLPSIETLLGRKI 468


>gi|197246501|gb|AAI69082.1| Ddx23 protein [Rattus norvegicus]
          Length = 798

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 371 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 430

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      ++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q 
Sbjct: 431 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 490

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 491 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 550

Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           +                          RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 551 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 610

Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
               E +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK 
Sbjct: 611 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 665

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G++ C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+
Sbjct: 666 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 725

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHRIGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     A
Sbjct: 726 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 779

Query: 389 QHN 391
           QH 
Sbjct: 780 QHK 782


>gi|157804046|ref|YP_001492595.1| ATP-dependent RNA helicase RhlE [Rickettsia canadensis str. McKiel]
 gi|157785309|gb|ABV73810.1| ATP-dependent RNA helicase RhlE [Rickettsia canadensis str. McKiel]
          Length = 410

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 139/364 (38%), Positives = 216/364 (59%), Gaps = 13/364 (3%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +  LS +++ A+      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP++    
Sbjct: 3   NFNLSEELIIALETMNITEPTEIQKQSIPIAMIGSDILASSQTGSGKTLAYLLPVIDSFI 62

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           K +        LIL PTRELA Q+     K  + Y +  A+LIGG P   Q  +L++   
Sbjct: 63  KNKTTA-----LILVPTRELATQIYSTLNKVTRYYKINSAVLIGGEPMPKQFMQLKKNPK 117

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG    ++ I   +P  RQ L+FS
Sbjct: 118 VIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQFLMFS 177

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQSQ 242
           ATM   +  +S+ +L NP RI V   +  A  I  E   +A   ++S+   L +QL   +
Sbjct: 178 ATMPKHIITLSQKYLNNPVRITVGANNKAAAEIKQESIHIADKEKFSE---LTKQLDNRE 234

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            ++   IIF   +++   L + L+ +     AIHG++ QR R +++ +F++   ++MVA+
Sbjct: 235 GSV---IIFVKTRRSADQLANMLKYENHKAEAIHGDLSQRQRERVILSFRKSNHRIMVAT 291

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ ED+    AI++
Sbjct: 292 DVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPEDVIRWRAIDR 351

Query: 363 LIEK 366
           L+ K
Sbjct: 352 LVNK 355


>gi|324505355|gb|ADY42303.1| ATP-dependent RNA helicase DDX23 [Ascaris suum]
          Length = 515

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 138/383 (36%), Positives = 213/383 (55%), Gaps = 33/383 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++A+ GL  +V+  ++  GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 86  NWAEAGLPSEVLDVIIKIGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 145

Query: 62  IL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +      +    +   P  +I+ PTRELA Q+ +   K+G+   +    +IGG   E Q
Sbjct: 146 WITSLPKIQSNEDQDSGPYAIIMAPTRELAQQIEEETVKFGQLLGIRTVSVIGGASREEQ 205

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL  G +V+I TPGR+LD      L ++    +++DEADRMLDMGF P +Q +   +P
Sbjct: 206 GLKLRLGVEVVIATPGRLLDVLENRYLSLDQCTYVILDEADRMLDMGFEPEVQKVLEYIP 265

Query: 176 FT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
            T                         RQT++F+ATM+  +++++  +L+ P  + + + 
Sbjct: 266 VTNLKPDTEEAEKEESIMENFYSKKKYRQTVMFTATMSPAIERLARAYLRRPAVVYIGSV 325

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               E +E        +  +K   L +LL S+      IIF NQKK    L   L K GF
Sbjct: 326 GRPTERVEQIVYMIGEERKRKK--LVELLSSEAFEPPIIIFVNQKKGADMLAKGLTKLGF 383

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           + C +HG   Q +R   L+  K+G+  ++VA+D+A RG+DI DV  V N+D+    E+Y 
Sbjct: 384 APCVLHGGKGQDAREYSLAALKDGSKDILVATDVAGRGIDIKDVSLVLNYDMAKSIEDYT 443

Query: 331 HRIGRTGRAGRHGKAFTLVAKED 353
           HRIGRTGRAG+HGKA T +  ED
Sbjct: 444 HRIGRTGRAGKHGKAITFLTPED 466


>gi|115486155|ref|NP_001068221.1| Os11g0599500 [Oryza sativa Japonica Group]
 gi|122206897|sp|Q2R1M8|RH52C_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52C
 gi|77551918|gb|ABA94715.1| DEAD-box protein 3, X-chromosomal, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113645443|dbj|BAF28584.1| Os11g0599500 [Oryza sativa Japonica Group]
          Length = 623

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 142/384 (36%), Positives = 218/384 (56%), Gaps = 21/384 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++ L   +   +    YV+PTP+Q   IP+ L   D+   AQTG+GKTA+F  P+++ 
Sbjct: 157 FAEIDLGQALNDNIRRCKYVRPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISG 216

Query: 63  L---------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
           +         ++G  R   P  LIL PTREL+ Q+ +   K+     + V +  GG P  
Sbjct: 217 IMRGPPAQRPQRGGMRTACPLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPIN 276

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + LERG D+L+ TPGR++D   R ++ + +I  L +DEADRMLDMGF P ++ I   
Sbjct: 277 QQLRDLERGVDILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQ 336

Query: 174 V----PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           +    P  RQT+LFSAT   E+Q+++ +FL+N   + V    S+ + I       + Q +
Sbjct: 337 MDMPPPGARQTMLFSATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQ--RVEFVQEA 394

Query: 230 KKCALLQQLLQSQ-DTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            K + L  LL +Q D+   G     ++F   K+   +L H L   GF   +IHG+ +Q+ 
Sbjct: 395 DKRSHLMDLLHAQRDSATPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQE 454

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G
Sbjct: 455 REYALRSFKSGHTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 514

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKK 367
            A     + +     ++ +L+++ 
Sbjct: 515 LATAFFNENNSSMARSLAELMQES 538


>gi|163750898|ref|ZP_02158131.1| ATP-dependent RNA helicase DbpA [Shewanella benthica KT99]
 gi|161329322|gb|EDQ00319.1| ATP-dependent RNA helicase DbpA [Shewanella benthica KT99]
          Length = 458

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 145/369 (39%), Positives = 218/369 (59%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P+++  +   GY   T IQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 1   MSFSTLTLKPELIDNLKTMGYDSMTAIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             L+  R  ++   +L+L PTRELA QVA       +  +N+ V  L GG+P   Q   L
Sbjct: 61  NKLDVKRFCIQ---SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH +R  L + N+  LV+DEADRML+MGF+P +  I + +P  RQ
Sbjct: 118 EHGAHIIVGTPGRIIDHLSRELLNLENVNTLVLDEADRMLEMGFLPDLDYIMAEMPRERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   ++QKV+E  +  P  ++V +   ++ +IE  F    +   +  AL   LL
Sbjct: 178 TLLFSATFPKQIQKVAEQIMFEPVMVKVASTHDSS-SIEQHFYQIDSNKDRPKALRLLLL 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q +    + ++FCN K+    +  +L   GFSV A+HG+++QR R   L  F   +  +M
Sbjct: 237 QHRP--DSAVVFCNTKRETKEVAATLASDGFSVVALHGDLEQRDRDITLMQFANKSASIM 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+++    E +IHRIGRTGRAG  G A T    +D   I  
Sbjct: 295 VATDVAARGLDIEALDMVINYELAFDTEVHIHRIGRTGRAGSKGMALTFYTYDDDYKIKL 354

Query: 360 IEKLIEKKV 368
           +E+ +E+ +
Sbjct: 355 LEEYLERDI 363


>gi|15595652|ref|NP_249146.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAO1]
 gi|107099439|ref|ZP_01363357.1| hypothetical protein PaerPA_01000451 [Pseudomonas aeruginosa PACS2]
 gi|254237315|ref|ZP_04930638.1| RNA helicase DbpA [Pseudomonas aeruginosa C3719]
 gi|9946315|gb|AAG03844.1|AE004483_2 RNA helicase DbpA [Pseudomonas aeruginosa PAO1]
 gi|126169246|gb|EAZ54757.1| RNA helicase DbpA [Pseudomonas aeruginosa C3719]
          Length = 458

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 147/392 (37%), Positives = 225/392 (57%), Gaps = 13/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LS  ++  +   GY + TPIQ +++PL+LQ HD+   A+TG+GKTA+F L +L+ 
Sbjct: 6   FSSLPLSADLLANLDSLGYREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLALLSP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L     R    + L+L PTRELA QVA    +  +   N+ V  L GG+P+  Q   LE 
Sbjct: 66  LNP---RYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI +H  +G L+++ +  LV+DEADRMLDMGF   I  I   +P  RQTL
Sbjct: 123 GAHVVVGTPGRIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPERRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D ++K+++ F+++P+++ V +  + ++  +  F     Q       L Q  + 
Sbjct: 183 LFSATYPDGIEKLAKTFMRDPRQVRVESLHADSQIEQRFFEIDPKQRMDAVVRLLQHFRP 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q      + FC  ++    L  +L+ Q  S  A+HG+++QR R ++L+ F   +  ++VA
Sbjct: 243 QSC----VAFCQTRQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++    E +IHRIGR+GRAG  G A +LVA  +     AIE
Sbjct: 299 TDVAARGLDIAALETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIE 358

Query: 362 KLIEKKVDW-----LNGDLSSLNPPLEKIDIA 388
            L ++ + W     L      L PP+  + IA
Sbjct: 359 DLQKQPLAWYALGQLKASPEPLLPPMSTLCIA 390


>gi|158259303|dbj|BAF85610.1| unnamed protein product [Homo sapiens]
          Length = 820

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      ++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q 
Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572

Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           +                          RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 573 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632

Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
               E +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK 
Sbjct: 633 GRPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G++ C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+
Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHRIGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     A
Sbjct: 748 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 801

Query: 389 QHN 391
           QH 
Sbjct: 802 QHK 804


>gi|109096395|ref|XP_001104093.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like isoform 2
           [Macaca mulatta]
          Length = 800

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 373 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 432

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      ++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q 
Sbjct: 433 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 492

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 493 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 552

Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           +                          RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 553 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 612

Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
               E +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK 
Sbjct: 613 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 667

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G++ C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+
Sbjct: 668 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 727

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHRIGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     A
Sbjct: 728 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 781

Query: 389 QHN 391
           QH 
Sbjct: 782 QHK 784


>gi|326796081|ref|YP_004313901.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326546845|gb|ADZ92065.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 446

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 141/389 (36%), Positives = 225/389 (57%), Gaps = 9/389 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D GL  +++ ++   GY  PT IQ   IP  +   D+   ++TG+GKT +++LP +
Sbjct: 1   MLFKDFGLDTRLMRSLEHFGYDTPTQIQECAIPEAIAGRDLLASSKTGSGKTFAYLLPAI 60

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + + +A  R  PR ++L PTRELA QV            LT AL++GG  F  Q+K L
Sbjct: 61  NRVYQRKALSRRDPRVVVLVPTRELAKQVYGQLRTLLAGSRLTSALILGGENFNDQHKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TR 178
           ++    ++ TPGR+ DH  +  L +   E+L++DEADRMLD+GF   ++ I +      R
Sbjct: 121 QKDPHFVVGTPGRLTDHLEKRHLYLEGTELLILDEADRMLDLGFADSMRAINNAASHRQR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL FSAT+ + ++  ++E  L+ P R+ V   +   + I +H F+  +  +  K ALL+
Sbjct: 181 QTLFFSATLDNTDVSVIAEELLREPSRVAVGHGTDQHQDISQHVFLCDHLDH--KEALLK 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L+ S   +K GI+F   K++ V L   +   G++  A+ G++ Q +R  ++ NF  G  
Sbjct: 239 HLV-SNAELKQGIVFTATKQDTVRLSELVTSWGYTSEALSGDLSQSARNSVMENFSRGKF 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++V++D+A+RGLDI  V HVFNFDVPN AE ++HR GRTGRAG  G A+T V  +D  +
Sbjct: 298 QILVSTDIASRGLDIAAVSHVFNFDVPNPAEEFVHRTGRTGRAGFKGDAYTFVGPKDWYN 357

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
             A+E+ +  K+ +    +  L P  + +
Sbjct: 358 FKAVEEFL--KIQFTTEQVEGLEPSFKGL 384


>gi|59712046|ref|YP_204822.1| DEAD-box ATP dependent DNA helicase [Vibrio fischeri ES114]
 gi|59480147|gb|AAW85934.1| ATP-dependent RNA helicase, DEAD box family [Vibrio fischeri ES114]
          Length = 421

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 142/370 (38%), Positives = 217/370 (58%), Gaps = 15/370 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
           +F +LGL   ++  + +  Y +PTPIQ + IP VL   D+   A TG+GKTA+F LP+L 
Sbjct: 9   NFTELGLISPLLARLTELEYQQPTPIQAQAIPSVLAGRDLIAGANTGSGKTATFALPLLQ 68

Query: 61  --TILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113
               L+ G+A+         L+L PTRELA QVAD+ + Y  ++N  +    + GG+   
Sbjct: 69  QIAELQSGKAQASKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGAIKTVSVFGGVSVN 128

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  GAD+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  + +L
Sbjct: 129 TQMLALRGGADILVATPGRLLDLISSNAVKLDKVKTLVLDEADRMLSLGFTEELNELLAL 188

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKC 232
            P  +QTLLFSAT  +E+Q +++  L NP  +E+   S+ A T+ +  F     +   K 
Sbjct: 189 APKQKQTLLFSATFPEEVQTLTQALLNNP--VEIQLQSADASTVVQRVFTVNKGE---KT 243

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           ++L  L+Q ++  +  +IF N K    +L   L K+G +    HG+  Q +R ++L  FK
Sbjct: 244 SVLAHLIQ-KNQWRQALIFVNAKNACNHLADKLAKRGIAAEVFHGDKGQGARTRVLEAFK 302

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G I +++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G A +L+  E
Sbjct: 303 AGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLALSLIDYE 362

Query: 353 DIKHIDAIEK 362
           D  H   IEK
Sbjct: 363 DYHHFKIIEK 372


>gi|125577677|gb|EAZ18899.1| hypothetical protein OsJ_34439 [Oryza sativa Japonica Group]
          Length = 541

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 142/384 (36%), Positives = 218/384 (56%), Gaps = 21/384 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++ L   +   +    YV+PTP+Q   IP+ L   D+   AQTG+GKTA+F  P+++ 
Sbjct: 75  FAEIDLGQALNDNIRRCKYVRPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISG 134

Query: 63  L---------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
           +         ++G  R   P  LIL PTREL+ Q+ +   K+     + V +  GG P  
Sbjct: 135 IMRGPPAQRPQRGGMRTACPLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPIN 194

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + LERG D+L+ TPGR++D   R ++ + +I  L +DEADRMLDMGF P ++ I   
Sbjct: 195 QQLRDLERGVDILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQ 254

Query: 174 V----PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           +    P  RQT+LFSAT   E+Q+++ +FL+N   + V    S+ + I       + Q +
Sbjct: 255 MDMPPPGARQTMLFSATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQ--RVEFVQEA 312

Query: 230 KKCALLQQLLQSQ-DTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            K + L  LL +Q D+   G     ++F   K+   +L H L   GF   +IHG+ +Q+ 
Sbjct: 313 DKRSHLMDLLHAQRDSATPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQE 372

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G
Sbjct: 373 REYALRSFKSGHTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 432

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKK 367
            A     + +     ++ +L+++ 
Sbjct: 433 LATAFFNENNSSMARSLAELMQES 456


>gi|156121051|ref|NP_001095672.1| probable ATP-dependent RNA helicase DDX23 [Bos taurus]
 gi|151554096|gb|AAI47903.1| DDX23 protein [Bos taurus]
 gi|296487810|gb|DAA29923.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Bos taurus]
          Length = 820

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      ++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q 
Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572

Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           +                          RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 573 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632

Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
               E +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK 
Sbjct: 633 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G++ C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+
Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHRIGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     A
Sbjct: 748 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 801

Query: 389 QHN 391
           QH 
Sbjct: 802 QHK 804


>gi|323495931|ref|ZP_08100998.1| ATP-dependent RNA helicase RhlB [Vibrio sinaloensis DSM 21326]
 gi|323319014|gb|EGA71958.1| ATP-dependent RNA helicase RhlB [Vibrio sinaloensis DSM 21326]
          Length = 433

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 147/382 (38%), Positives = 221/382 (57%), Gaps = 9/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FADLGL P+V+  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADLGLHPQVIEGLDKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L   E    +   PR +I+ PTRELA Q+ ++ E    +  +  AL  GG P+E Q  K
Sbjct: 71  LLNTPEHEGRKPTQPRAIIMAPTRELAIQIFNDAEPLIASTGIKAALAYGGEPYEKQLAK 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G DVLI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  +
Sbjct: 131 LEEGVDVLIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + L  LFSAT++  +Q+++   + NP+ + V     T   I+      Y     K ALLQ
Sbjct: 191 ERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEVKTGHRIQEELF--YPSNEHKMALLQ 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R +IL  F +G +
Sbjct: 249 TLIE-EEWPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKRERILEQFTKGDV 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   ++   +
Sbjct: 308 DLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAIN 367

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
           +  IE+ IE  +   + D S+L
Sbjct: 368 LPPIEEYIEHAIPVSDYDPSAL 389


>gi|302670646|ref|YP_003830606.1| RNA helicase DEAD/DEAH box family protein [Butyrivibrio
           proteoclasticus B316]
 gi|302395119|gb|ADL34024.1| RNA helicase DEAD/DEAH box family [Butyrivibrio proteoclasticus
           B316]
          Length = 711

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 220/369 (59%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + GL  +++ AV + G+   +PIQ   IP+++Q  D+ G AQTGTGKTA+F +P+L  
Sbjct: 61  YDESGLDERIIRAVSEMGFEYMSPIQKAAIPVMIQGKDIIGQAQTGTGKTAAFGIPLLHQ 120

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           ++     ++    ++L PTRELA Q AD+   + K  + + V  + GG     Q K L  
Sbjct: 121 VDPANKHLQ---AVVLCPTRELAMQAADDIRDFAKYMFGIKVLAVYGGQDISRQIKALSN 177

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH  R  + M ++++LV+DEAD MLDMGF   I+ I   +P  RQT 
Sbjct: 178 GVQIVVGTPGRVMDHMRRHTMKMKDVKVLVLDEADEMLDMGFREDIETILQGMPMERQTA 237

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSATM + + K+++ + ++       TP   T   IE  +     +   K  +L +L+ 
Sbjct: 238 LFSATMPEAILKITKTYQKSDAEYIKMTPKEITVAAIEQAYYRVPQKL--KEDVLVRLMD 295

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  ++ +IFCN K+ V  L  SL+ +G+    +HG++ Q  R  +++ F+ G I +++
Sbjct: 296 YYNPARS-LIFCNTKRMVDQLAESLKGKGYLADGLHGDLSQNQRDTVMNLFRNGRINILI 354

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V  VFN+D+P   E Y+HRIGRTGRAGR G +FTLV   ++  +  I
Sbjct: 355 ATDVAARGIDVSGVEAVFNYDIPEDIEYYVHRIGRTGRAGRSGMSFTLVGGREMYKLREI 414

Query: 361 EKLIEKKVD 369
           EK+   K++
Sbjct: 415 EKVCHTKIE 423


>gi|302685145|ref|XP_003032253.1| hypothetical protein SCHCODRAFT_82297 [Schizophyllum commune H4-8]
 gi|300105946|gb|EFI97350.1| hypothetical protein SCHCODRAFT_82297 [Schizophyllum commune H4-8]
          Length = 488

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 136/359 (37%), Positives = 203/359 (56%), Gaps = 10/359 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F ++G    ++  +   G+  PT IQ ++ P+ L   DV  IAQTG+GKT SF LP +  
Sbjct: 63  FDEVGFPEYLMATIRAQGFPAPTAIQCQSWPMALSGRDVVAIAQTGSGKTISFALPAMLH 122

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+G N  +    + GG P   Q 
Sbjct: 123 INAQPLLSPGDG----PIALVLAPTRELAVQIQQECTKFGSNSRIRNTAIYGGAPKGPQI 178

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+RG +V+I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 179 RDLQRGVEVVIATPGRLIDMLETGKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRP 238

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL+FSAT   ++QK++ +FL++  ++ + +    A           + + K+  L++
Sbjct: 239 DRQTLMFSATWPKDVQKLANDFLKDFIQVNIGSMELAANHNITQITEVCSDFEKRNKLIK 298

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L Q        +IF   K+   ++   L + G+   AIHG+ +QR R  +L  FK G  
Sbjct: 299 HLDQISSENAKVLIFVGTKRVADDITRYLRQDGWPALAIHGDKEQRERDWVLGEFKAGRS 358

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            +++A+D+A+RGLD+ D+G+V N+D PN  E+YIHRIGRTGRAG  G A+T    E+ K
Sbjct: 359 PILIATDVASRGLDVKDIGYVINYDFPNNCEDYIHRIGRTGRAGAKGTAYTYFTTENAK 417


>gi|299768643|ref|YP_003730669.1| putative ATP-dependent RNA helicase [Acinetobacter sp. DR1]
 gi|298698731|gb|ADI89296.1| putative ATP-dependent RNA helicase [Acinetobacter sp. DR1]
          Length = 644

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 140/376 (37%), Positives = 226/376 (60%), Gaps = 13/376 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  L   +  A+   G+  PTP+Q + IP  L+  D+   +QTG+GKTA+F+LP L  
Sbjct: 5   FAEFSLHETLQQALEGLGFTAPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64

Query: 63  LE--------KGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPF 112
           L         K R + V  P  L++ PTRELA QV+ +   + ++   + +A ++GG+PF
Sbjct: 65  LAGQETVVPFKDRMKAVTQPNILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPF 124

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q ++L +GA V++ TPGR+LD  NR ++ ++ ++ L++DEADRMLD+GF   ++ I+ 
Sbjct: 125 AKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEADRMLDLGFSEDLEAISE 183

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L    +QTL+FSAT  D + +++   +++P RI + T  ST   I      T   +  K 
Sbjct: 184 LAANRKQTLMFSATFADRIIRLASCMMKDPMRIAIETGHSTNTDITQTLHWTDG-FEHKK 242

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL   L S + +   ++F + +++   L   L + G SV A+HG + Q  R + L + +
Sbjct: 243 KLLTHWL-SDENLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIR 301

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL    
Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYR 361

Query: 353 DIKHIDAIEKLIEKKV 368
           +   I A+E+ +E ++
Sbjct: 362 ERGKIRALEEYLEARL 377


>gi|54307767|ref|YP_128787.1| ATP-dependent RNA helicase SrmB [Photobacterium profundum SS9]
 gi|46912190|emb|CAG18985.1| putative ATP-dependent RNA helicase SrmB [Photobacterium profundum
           SS9]
          Length = 419

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 221/377 (58%), Gaps = 9/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF++L L   ++ A+ + GY +PT +Q + IP  L   DV   A TGTGKTA+F+LPM+ 
Sbjct: 3   DFSELELDSALLNAIEEIGYTRPTEVQAQAIPHALDGRDVLASAPTGTGKTAAFLLPMIQ 62

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +    R LIL PTRELA Q+AD+     KN +L +  + GGI ++   + L 
Sbjct: 63  HLLDFPRKKPGPARVLILTPTRELAIQIADHARALAKNTHLKIFTITGGISYDDHAELLG 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR++++    +     IE L++DEADRMLDMGF   ++ I     + RQ+
Sbjct: 123 KTQDIVVATPGRLMEYVESERFDCRAIECLILDEADRMLDMGFTKIVERINHECRWRRQS 182

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT+  + +++ SE  L+ P  +EVN+ PS       H           K ALL+Q+
Sbjct: 183 LLFSATLEGKGVREFSETILKEP--VEVNSAPSRRERKKIHQLYLRCDDMDHKLALLEQI 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ Q   +  I+F   +  +  L   L         I G + Q SR   +S F++G + +
Sbjct: 241 LKHQ--AERSIVFVKTRDRLAMLRDQLASMNVKCSWIQGEMAQLSRNNAISRFRDGDVNI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+PD+ HV NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D   I+
Sbjct: 299 LIATDVAARGIDLPDISHVINFDMPRTADVYLHRIGRTARAGKKGIAISLVEAHDQAMIE 358

Query: 359 AIEKLIEKKV--DWLNG 373
            + + +E++V   ++NG
Sbjct: 359 RVSRYMEEEVPERFING 375


>gi|294141997|ref|YP_003557975.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293328466|dbj|BAJ03197.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 430

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 154/410 (37%), Positives = 224/410 (54%), Gaps = 11/410 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L+P ++ A+ + GY + T +Q + IPL L   D+   A+TGTGKTASF LP+L
Sbjct: 1   MKFDALDLNPLLLQAIDECGYQQLTQVQSEVIPLALSGVDLMACAETGTGKTASFALPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K        R LIL PTRELA QVA+N  +YG+  +L    + GG     Q K L 
Sbjct: 61  ERLLKEDHESPCLRGLILTPTRELAIQVAENITRYGQFTSLKTLAVYGGANMNPQRKALN 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGR+ D   +  L ++ +  L+IDEADRMLDMGF+  I+ + SLV     T
Sbjct: 121 AGVDILVATPGRLFDFVGQHGLNLSEVTSLIIDEADRMLDMGFVRDIEKVKSLVSSQHLT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSAT +D ++ ++E  L +P+ I V    S A   +  ++       +K  LL +L+ 
Sbjct: 181 HFFSATYSDPVKLLAEKMLNSPQWINVAQTRSAASVEQEIYL---VDKRRKAELLSELI- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  ++F   K++  +L   L   G      HG+  Q +R + L  FK G I++MV
Sbjct: 237 GRNNWQQVLVFATTKESAEHLKSELSLDGIKCGVFHGDRTQGARNRTLEEFKSGKIRVMV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N ++P  AE+YIHR+GRTGRAG  G+A + V   D + ++ I
Sbjct: 297 ATDVAARGLDIQALPLVINLELPYGAEDYIHRVGRTGRAGLTGRAISFVCPSDEEMLEEI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           E LIE K+  +      L  PL           R+   +      F+RRK
Sbjct: 357 ESLIELKLPRIVLPGYELGAPLPA-------RYRETQDVTSTKKKFERRK 399


>gi|149714248|ref|XP_001504169.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX23
           (DEAD box protein 23) (100 kDa U5 snRNP-specific
           protein) (U5-100kD) (PRP28 homolog) isoform 1 [Equus
           caballus]
          Length = 820

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      ++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q 
Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572

Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           +                          RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 573 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632

Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
               E +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK 
Sbjct: 633 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G++ C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+
Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHRIGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     A
Sbjct: 748 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 801

Query: 389 QHN 391
           QH 
Sbjct: 802 QHK 804


>gi|258620330|ref|ZP_05715368.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM573]
 gi|258624701|ref|ZP_05719635.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM603]
 gi|258582988|gb|EEW07803.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM603]
 gi|258587209|gb|EEW11920.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM573]
          Length = 416

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 215/368 (58%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADL L P ++ A+ + G+ +PT +Q + IP  L   DV   A TGTGKTA+F +P L  
Sbjct: 5   FADLELDPVLLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIPALQY 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +    R LIL PTRELA QVA+  +   KN  L +  + GG+ ++     L  
Sbjct: 65  LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L++ +  +     IE L++DEADRMLDMGF P +  +++   + +QTL
Sbjct: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSAECRWRKQTL 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+    ++  + + L+NP  I+   P    + I   +         K  LL+++L 
Sbjct: 185 LFSATLEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWY-HRADDMPHKVELLKKILT 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   +  I+F   ++ + +L   LEK       I G + Q  R   ++ F+EG++ +++
Sbjct: 244 EQ--AERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFREGSVNILL 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+PD+ HV NFD+P  A+ Y+HRIGRTGRAG+ G A +LV   D   +  +
Sbjct: 302 ATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARV 361

Query: 361 EKLIEKKV 368
           E+ I+++V
Sbjct: 362 ERYIKEEV 369


>gi|258653503|ref|YP_003202659.1| DEAD/DEAH box helicase domain-containing protein [Nakamurella
           multipartita DSM 44233]
 gi|258556728|gb|ACV79670.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM
           44233]
          Length = 607

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 144/382 (37%), Positives = 209/382 (54%), Gaps = 19/382 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL   ++ AV D G+  PT IQ   IP +L   D+ G+AQTGTGKTA+F LP+L  
Sbjct: 29  FDELGLPGTLLRAVKDLGFATPTAIQAAAIPALLAGRDITGVAQTGTGKTAAFGLPLLAA 88

Query: 63  LEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           ++        P  + L+L PTRELA QVAD    +     +++V  + GG  F  Q   L
Sbjct: 89  IDP------TPGVQALVLCPTRELAVQVADAISSFATALPDVSVIAIYGGTGFLPQRAAL 142

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA V++ TPGRI+DH  RG L ++ +  LV+DEAD ML MGF   +  I S  P +RQ
Sbjct: 143 RAGAQVVVGTPGRIIDHLERGTLDLSGLRFLVLDEADEMLRMGFAEDVDRILSDAPNSRQ 202

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   ++ ++   + NP  I V+  SST +++   +      +  K   L + L
Sbjct: 203 AALFSATMPPAIRSIAAKHMTNPVDIAVSRQSSTVDSVRQIYA--VVPFRDKVDALTRFL 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q  +     I+F   K+    +   L  +G S   ++G++ Q+ R KI+   ++G + ++
Sbjct: 261 QVTEG-DAAIVFVRTKEACDQVGTDLLARGVSAAVMNGDVPQKEREKIIERLRDGRLDVL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +  V NFD P   E Y+HRIGRTGRAGR G A T     ++  + A
Sbjct: 320 VATDVAARGLDVDRIDLVVNFDAPGEPEAYVHRIGRTGRAGRTGTALTFFTPREMGRLRA 379

Query: 360 IEKLIEKKVDWLNGDLSSLNPP 381
           IE+          G L  + PP
Sbjct: 380 IERAT-------RGTLEQIVPP 394


>gi|254884100|ref|ZP_05256810.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA]
 gi|319640865|ref|ZP_07995576.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A]
 gi|254836893|gb|EET17202.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA]
 gi|317387502|gb|EFV68370.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A]
          Length = 425

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 148/423 (34%), Positives = 240/423 (56%), Gaps = 19/423 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L   V+ A+    + + TP+Q  TIP++L+  D+ G+AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELNLEEGVLQALDAMRFEECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL---TVALLIG--GIPFEAQ 115
             L KG         +I+ PTRELA Q+    E  G +Y L   +VA+  G  G+ FE +
Sbjct: 61  NQLSKGGYPEDAINCVIMSPTRELAQQIDQQME--GFSYFLPASSVAVYGGNDGVRFEQE 118

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P
Sbjct: 119 KKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYLP 178

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT++FSATM  ++Q++++  L NP  I++       + I+  ++    Q   K  ++
Sbjct: 179 KERQTIMFSATMPAKIQQLAKTILNNPVEIKLAVSKPAEKIIQTAYICYERQ---KLGII 235

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L Q Q T +  IIF + K  V  +  + ++   +V  +H +++Q  R +I+  FK G 
Sbjct: 236 QSLFQDQ-TPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGR 294

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I +++A+D+ +RG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V++++  
Sbjct: 295 INILIATDIVSRGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANHDGCAITFVSEKEQT 354

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
              AIE  + + +  +        P  E++  A   + R          G  R++ NY  
Sbjct: 355 QFKAIENFLGRNIYKI--------PVPEELGEAPEYNPRSGAGRSNHKGGGSRKQGNYKG 406

Query: 416 QKS 418
           +K+
Sbjct: 407 KKN 409


>gi|256422110|ref|YP_003122763.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256037018|gb|ACU60562.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 581

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 137/367 (37%), Positives = 223/367 (60%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F  LGL   ++  + D G++ PTPIQ K IP++L    D  G+AQTGTGKTA+F LP+L 
Sbjct: 4   FETLGLQEPILKGIQDLGFIAPTPIQEKAIPVLLGGDRDFVGLAQTGTGKTAAFGLPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++    + R P+ LIL PTREL  Q+ ++ + + K+  ++++  + GG     Q + L+
Sbjct: 64  QID---IKQRHPQGLILCPTRELCLQITNDLKNFSKHLGDVSIVAVYGGSSIVQQLRDLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  +   N+  +V+DEAD ML+MGF   I NI S  P  + T
Sbjct: 121 RGVHIVVATPGRLLDIIERKAVNFANVRYVVLDEADEMLNMGFQEDINNILSNTPEEKTT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E++++++ ++ +P  + V   +S    IEH +     +  +K A L++++ 
Sbjct: 181 WLFSATMPQEVRRIAQKYMSDPFELTVGNKNSGNANIEHEYYVVRPR--EKYAALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIF   K     +  SL + G++  A+HG++ Q+ R K++  F+E ++Q++V
Sbjct: 239 YNPEI-FGIIFTRTKIESQEIAESLIRDGYNADALHGDLTQQQRDKVMKRFREKSLQVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ +V HV N+++P+  ENY HR GRT RAG+ G +  ++   D   I  I
Sbjct: 298 ATDVAARGIDVDNVTHVINYELPDDVENYTHRSGRTARAGKSGISIAIITGRDTGKIRQI 357

Query: 361 EKLIEKK 367
           E++I KK
Sbjct: 358 ERVIGKK 364


>gi|225011737|ref|ZP_03702175.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-2A]
 gi|225004240|gb|EEG42212.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-2A]
          Length = 553

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 139/373 (37%), Positives = 225/373 (60%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61
           F  LGL+ +++ AV   G+  PT +Q K IP++L+++ D+  +AQTGTGKTA+F  PML 
Sbjct: 4   FKSLGLNTELLKAVEKLGFETPTEVQDKVIPILLEQNTDLVALAQTGTGKTAAFGFPMLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++   A+ R  + LIL PTREL  Q+ +    YG+   N+ +  + GG   + Q  K+ 
Sbjct: 64  RID---AKQRTTQGLILAPTRELCLQITNEMGIYGQALKNINIVAIYGGANIQEQANKIR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +++ TPGR+ D   R  + ++ I+  V+DEAD ML+MGF   I++I +  P ++ +
Sbjct: 121 RGAQIVVATPGRLKDMIGRRLVDISAIQYCVLDEADEMLNMGFYEDIKDILTHTPKSKNS 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
            LFSATM  E+  +++ F++ P  I V T +S+A+ I+H +  VA   +Y+   A++   
Sbjct: 181 WLFSATMPPEVNTIAKKFMKKPIEITVGTKNSSAKNIDHQYFIVAARERYNALRAVV--- 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S +T   G++FC  K     +   L + G+   AIHG++ Q  R  ++ +F++  IQL
Sbjct: 238 --SMNTDLFGVVFCRTKIETQKVAEKLIQDGYKAAAIHGDLSQNQRDIVMQSFRKKRIQL 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+ D+ HV N+ +P+  E Y HR GRTGRAG+ G +   V K D + I 
Sbjct: 296 LIATDVAARGIDVDDLTHVINYQLPDEIETYTHRSGRTGRAGKLGTSIIFVTKSDRRKIK 355

Query: 359 AIEKLIEKKVDWL 371
            IE  ++ K+  L
Sbjct: 356 LIENKLQTKLTEL 368


>gi|150005667|ref|YP_001300411.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482]
 gi|149934091|gb|ABR40789.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482]
          Length = 425

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 148/423 (34%), Positives = 240/423 (56%), Gaps = 19/423 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L   V+ A+    + + TP+Q  TIP++L+  D+ G+AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELNLEEGVLQALDAMRFEECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL---TVALLIG--GIPFEAQ 115
             L KG         +I+ PTRELA Q+    E  G +Y L   +VA+  G  G+ FE +
Sbjct: 61  NQLSKGGYPEDAINCVIMSPTRELAQQIDQQME--GFSYFLPASSVAVYGGNDGVRFEQE 118

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P
Sbjct: 119 KKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYLP 178

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT++FSATM  ++Q++++  L NP  I++       + I+  ++    Q   K  ++
Sbjct: 179 KERQTIMFSATMPAKIQQLAKTILNNPVEIKLAVSKPAEKIIQTAYICYERQ---KLGII 235

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L Q Q T +  IIF + K  V  +  + ++   +V  +H +++Q  R +I+  FK G 
Sbjct: 236 QSLFQDQ-TPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGR 294

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I +++A+D+ +RG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V++++  
Sbjct: 295 INILIATDIVSRGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANHDGCAITFVSEKEQT 354

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
              AIE  + + +  +        P  E++  A   + R          G  R++ NY  
Sbjct: 355 QFKAIENFLGRNIYKI--------PVPEELGEAPEYNPRSGAGRSNHKGGGSRKQGNYKG 406

Query: 416 QKS 418
           +K+
Sbjct: 407 KKN 409


>gi|83645104|ref|YP_433539.1| ATP-dependent RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83633147|gb|ABC29114.1| ATP-dependent RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 393

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 141/379 (37%), Positives = 223/379 (58%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+ L L PK+  A+ D  + + TPIQ +T+P  LQ  D+ G AQTGTGKTA+F++ +L  
Sbjct: 14  FSSLNLHPKLEQAIRDLNFERCTPIQGQTLPHTLQGADLIGQAQTGTGKTAAFLITILQR 73

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                IL + R     PR L++ PTRELA Q+  +     K+  L +  +IGG   + Q 
Sbjct: 74  LVSNPILTEERFSSE-PRALVVAPTRELALQIEKDACALAKHLKLNIISVIGGTQLDRQR 132

Query: 117 KKL-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           +KL +   D+LI TPGR+LDH     + ++ +E+LV+DEADRMLDMGFIP ++ I    P
Sbjct: 133 RKLRDEAVDLLIATPGRLLDHLTSADIYLDQVEVLVLDEADRMLDMGFIPDVKRIVRATP 192

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT +++++ ++  + + P  + +      A+T++        + S K  LL
Sbjct: 193 RERQTLLFSATFSEDIKNLARRWTEEPVEVMLAVDHLPAKTVDQRVY--MVESSAKRKLL 250

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL+  +T +  I+FCN++    +L  +L +       I G + Q+ R+K L  F+ G 
Sbjct: 251 VNLLKDSET-RRVIVFCNRRDETRSLSEALNRHSIKNELISGELPQQKRLKTLERFRRGD 309

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            +++VA+D+A RGL I  V HV N+++P+  E+Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 310 FRVLVATDVAGRGLHIDGVTHVVNYNLPDDPEDYVHRIGRTGRAGATGVSISFACEDDSF 369

Query: 356 HIDAIEKLIEKKVDWLNGD 374
            I  +EK +  ++  ++ D
Sbjct: 370 LIPELEKYLGHELALIHPD 388


>gi|109095724|ref|XP_001086352.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 3
           [Macaca mulatta]
          Length = 455

 Score =  259 bits (661), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 142/368 (38%), Positives = 221/368 (60%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT I I+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 26  FKDLGVT-DVLCEACDQLGWTKPTKILIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++  ++   +++  K   L  +L 
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDTYLVYIL- 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378

Query: 361 EKLIEKKV 368
           E LI KK+
Sbjct: 379 EHLIGKKL 386


>gi|229588539|ref|YP_002870658.1| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens SBW25]
 gi|229360405|emb|CAY47262.1| ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 407

 Score =  259 bits (661), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 139/373 (37%), Positives = 222/373 (59%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  L+P+++ A+ D G+   TPIQ + +   L   D  G AQTGTGKTA+F++ ++T 
Sbjct: 20  FHDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQ 79

Query: 62  ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L+    + R    PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K 
Sbjct: 80  LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKH 139

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           LE R  D+L+ TPGR+LD   RG + ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 140 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 199

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T+++  +++ +  +P  +E+   +  +E +E    A     + K  LL
Sbjct: 200 AERQTLLFSATFTEDVMNLAKQWTTDPSIVEIEALNVASENVEQHIYAVAG--ADKYKLL 257

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 258 YNLV-NDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 316

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 317 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSY 376

Query: 356 HIDAIEKLIEKKV 368
            + +IE L+ +K+
Sbjct: 377 QLPSIETLLGRKI 389


>gi|119505184|ref|ZP_01627259.1| RNA helicase DbpA [marine gamma proteobacterium HTCC2080]
 gi|119458875|gb|EAW39975.1| RNA helicase DbpA [marine gamma proteobacterium HTCC2080]
          Length = 465

 Score =  259 bits (661), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 209/364 (57%), Gaps = 6/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  + A+   GY   T +Q +++P +L+R DV   A+TG+GKTA+F + +L  
Sbjct: 6   FSSLPLNPAQLDALTGLGYANMTQVQAQSLPPILKRQDVIIQAKTGSGKTAAFAIGLLHH 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L     R    + +++ PTRELA QV +   +      N+ V +L GG PF AQ   L  
Sbjct: 66  LNP---RFFGVQAVVMCPTRELAEQVGEATRQLASRMSNVKVVMLCGGKPFGAQRDSLHH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI DH  RG L +  +   V+DEADRMLDMGF   +  IT+ +P  RQTL
Sbjct: 123 GAHIVVGTPGRIQDHLQRGTLELKGVTTFVLDEADRMLDMGFADVMAEITAKLPADRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT  D+++K+S +  +NP +I V+      E +         ++ +  ALL   L  
Sbjct: 183 LLSATFPDDIKKISRSIQKNPIQITVDAEVVHDEVVLEQVFFEVQKHERNVALLA--LFE 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                N ++FCN KK    +   L +      AIHG+++QR R ++L  F   +  ++VA
Sbjct: 241 HYRPANAMVFCNTKKQCAEVARFLREHDIEAAAIHGDLEQRERDQVLLQFANNSCPVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIP +  V NF++P  A+ Y+HRIGRTGRAG  GKAF++V   +   +  IE
Sbjct: 301 SDVAARGLDIPSLEMVVNFELPRDADTYVHRIGRTGRAGESGKAFSIVTPPEAPRMRVIE 360

Query: 362 KLIE 365
             ++
Sbjct: 361 DYLK 364


>gi|302387031|ref|YP_003822853.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
 gi|302197659|gb|ADL05230.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
           WM1]
          Length = 485

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 140/398 (35%), Positives = 228/398 (57%), Gaps = 12/398 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  +S  +  A+   GY  PT +Q + IP  L+++D+   AQTG+GKTA++ +P+  +
Sbjct: 4   FRNYIISEDIGKALKGLGYDIPTEVQARVIPAALEKNDLMVKAQTGSGKTAAYAIPICEL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ LIL PTRELA QV ++F   G+   L  A + G   F  +  +L++ 
Sbjct: 64  IEWLENK---PQALILTPTRELAVQVKEDFTNIGRFKRLKAAAIYGRHSFSMEKAELKQK 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR++DH  +G L +  I  LVIDEADRMLDMGFI  ++ I   +P  R T+L
Sbjct: 121 THVVVGTPGRVMDHIKKGTLPLTKINYLVIDEADRMLDMGFIKQVEAIMKELPMERMTML 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++ +S +++++P  I+V+  + T   I+H     Y +   K  LL  ++  +
Sbjct: 181 FSATMPQEVKNMSLDYMRDPINIDVSEANITTSDIDHFLY--YVKEEDKFELLNDVMIVE 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
               + +IFC+ K  V  +C  L+  G+    +HG ++Q  R+  +  FK G  + ++A+
Sbjct: 239 KP-DSCMIFCSTKDRVDIVCERLKNFGYPCNKMHGGMEQADRLSSIKGFKRGEYRYLIAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARG+DI  +  V N+D+P   ENY+HR GRTGRAG+ GKA + +     +++  I++
Sbjct: 298 DLAARGIDIETISMVINYDIPLDKENYVHRPGRTGRAGQKGKAVSFLDPAQTRYLHDIQE 357

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           LI   +  L        P  E++ + + +   K N +P
Sbjct: 358 LIGFSIQELP------KPAKEEVSVQKPSFDEKMNAVP 389


>gi|260774135|ref|ZP_05883050.1| ATP-dependent RNA helicase RhlE [Vibrio metschnikovii CIP 69.14]
 gi|260611096|gb|EEX36300.1| ATP-dependent RNA helicase RhlE [Vibrio metschnikovii CIP 69.14]
          Length = 383

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 128/292 (43%), Positives = 195/292 (66%), Gaps = 3/292 (1%)

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R LIL PTRELAAQ+ ++   YG++  L+ A++ GG+    Q +++ +GAD+L+ TPGR+
Sbjct: 2   RALILTPTRELAAQIQESILVYGRHLPLSSAVVFGGVKVNPQMQRMCKGADILVATPGRL 61

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193
           +D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ LLFSAT + E+++
Sbjct: 62  MDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPERRQNLLFSATFSAEIRE 121

Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
           +++  + NP  I V+  +STA T+E C     A   KK A+L +L++ +   +  ++F  
Sbjct: 122 LAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPAMLVKLVK-EGNWQQVLVFMR 178

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            K     L   L +QG +  AIHGN  Q +R + L++FK G I+++VA+D+AARG+DIP 
Sbjct: 179 TKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGDIRILVATDIAARGIDIPQ 238

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +  V NF++P  AE+Y+HRIGRTGRAG  GKA + V + +   + AIE+LI+
Sbjct: 239 LPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISFVCELEAPELFAIERLIQ 290


>gi|319760253|ref|YP_004124191.1| cold-shock DEAD box protein A [Candidatus Blochmannia vafer str.
           BVAF]
 gi|318038967|gb|ADV33517.1| cold-shock DEAD box protein A [Candidatus Blochmannia vafer str.
           BVAF]
          Length = 617

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 142/363 (39%), Positives = 217/363 (59%), Gaps = 9/363 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL+  ++  +   GY KP PIQ K IPL+L+ HD+ GIA TG+GKTA+F+LP+L  
Sbjct: 8   FSNLGLNACLISMLKKVGYKKPLPIQEKCIPLLLKGHDILGIAHTGSGKTAAFLLPLLQS 67

Query: 63  LEKGRARVRMPRTLILEPTRELA---AQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +    A  +    LI+ PTRELA    QV  +F KY     ++VA+L GG  +  Q   L
Sbjct: 68  ININTASTQ---GLIITPTRELAIQIGQVCIDFIKYISG--ISVAILYGGQNYNIQLNDL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   +++ TPGR+LDH NRG   ++ ++IL+IDEAD ML MGFI  ++ I + VP  RQ
Sbjct: 123 RKNPHIIVGTPGRLLDHLNRGTANISKLKILIIDEADEMLRMGFIEDVKLIVNKVPVDRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T  FSAT  + ++K+S  F+  PK + +         I+  F         K   L + L
Sbjct: 183 TACFSATFPENIKKISYKFMNTPKEVCICNIDIHPPDIKQNFWLVKRGMITKHEALIRFL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +D     I+F   K   + +   LE  G++  A++G+++Q  R K +S  K GT+ ++
Sbjct: 243 EIED-YDAAIVFVRTKSETLRISEILENFGYNSAALNGDMNQSIRQKTVSRLKYGTLDIL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+AARGLDI  +  V N+DVPN   +YIHRIGRTGRAGR GK+   V +++   +++
Sbjct: 302 ISTDVAARGLDIQRISLVINYDVPNNYNSYIHRIGRTGRAGRIGKSLLFVERQEYNLLNS 361

Query: 360 IEK 362
           I++
Sbjct: 362 IKR 364


>gi|326429718|gb|EGD75288.1| DEAD/H box polypeptide 3 [Salpingoeca sp. ATCC 50818]
          Length = 710

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 150/391 (38%), Positives = 220/391 (56%), Gaps = 23/391 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF D GL+  V   +  AGY KPTP+Q  +IP+V  R D+   AQTG+GKTA+F++P+++
Sbjct: 219 DFFDCGLADVVTNNLRLAGYTKPTPVQKYSIPIVTARRDLMACAQTGSGKTAAFLVPIIS 278

Query: 62  -ILEKGRARV----------RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
            +LE G   V          + P  LIL PTRELA+Q+     K+     +    + GG 
Sbjct: 279 RVLETGPVEVPETARRMEGKQFPVCLILAPTRELASQIFAEARKFAYRAKIRACCVYGGT 338

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
            F +Q + L+RG  VL+ TPGR++D   RG++ M+ I  LV+DEADRMLDMGF P I+ I
Sbjct: 339 DFRSQFRDLQRGCQVLVATPGRLVDLLERGRIGMDAIRFLVLDEADRMLDMGFEPQIRRI 398

Query: 171 ----TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY- 225
               T   P  RQTL+FSAT   ++Q ++ +FL +   I V    ST E I   F   Y 
Sbjct: 399 VEQDTMPPPGVRQTLMFSATFPKDIQVLARDFLHDCVSISVGRIGSTTENI---FQKVYW 455

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            Q  +K   L  L+ +    +  ++F   K+    L   L  Q F   +IHG+  Q  R 
Sbjct: 456 VQEHEKRQTLLDLISAASEKELVLVFVETKRGADALEDFLIHQQFPASSIHGDRTQEQRE 515

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L++F++G   ++VA+ +AARGLDIP+V  V NFD+P+  + Y+HRIGRTGR G  G+A
Sbjct: 516 RALASFRDGYTPILVATAVAARGLDIPNVKRVINFDLPSDIDEYVHRIGRTGRVGHKGQA 575

Query: 346 FTLVAKEDIK----HIDAIEKLIEKKVDWLN 372
            +    ++       +D + +  ++  DWL 
Sbjct: 576 ISFFNDKNANVARDLLDTLRECKQEVPDWLE 606


>gi|317494807|ref|ZP_07953218.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917132|gb|EFV38480.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 429

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 156/424 (36%), Positives = 241/424 (56%), Gaps = 16/424 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FAD  L P VV A+   G+   TPIQ   +PL +   DV G AQTGTGKT +F+      
Sbjct: 11  FADFALHPTVVKALESKGFHNCTPIQALALPLTVNGRDVAGQAQTGTGKTLAFLASTFHY 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT       +   PR LI+ PTRELA Q+  + E       L + L  GG  ++ Q K 
Sbjct: 71  LLTHPVAENRKTNQPRALIMAPTRELAVQIHSDAEALAHETGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +G + +  I+++V+DEADRM D+GFI  I+ +   +P T 
Sbjct: 131 LESGVDILIGTTGRLIDYAKQGHIDLGCIQVVVLDEADRMFDLGFIKDIRWLFRRMPATN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  +FSAT++  +++++   + N + IEV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMMFSATLSYRVRELAFEHMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G 
Sbjct: 248 QTLIE-EEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGN 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + TL  +E + 
Sbjct: 307 LDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGYSITLACEEYVL 366

Query: 356 HIDAIEKLIEKK--VDWLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           ++ AIE  IE    V   N +  L+ L  P +++   + N+ ++ +  P+++ G  R+ +
Sbjct: 367 NLPAIEAYIEHSIPVSKYNSEALLTDLPAP-KRLTRPRSNNGQRRSSGPRRNNGSMRQSR 425

Query: 412 NYSS 415
             +S
Sbjct: 426 KRTS 429


>gi|226325568|ref|ZP_03801086.1| hypothetical protein COPCOM_03373 [Coprococcus comes ATCC 27758]
 gi|225206051|gb|EEG88405.1| hypothetical protein COPCOM_03373 [Coprococcus comes ATCC 27758]
          Length = 531

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 140/369 (37%), Positives = 226/369 (61%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++GLS ++  AV   G+ + +PIQ K IP ++   D+ G AQTGTGKTA+F +P+L  
Sbjct: 6   FEEMGLSEEIQKAVRYMGFEEASPIQAKAIPAMISGIDLIGQAQTGTGKTAAFGIPLL-- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            EK   +++  + ++L PTRELA QVAD   N  +Y   + + V  + GG     Q + L
Sbjct: 64  -EKVDPKLKKLQAIVLCPTRELAIQVADEIRNLSRY--MHGIKVLPIYGGQDIVKQIRSL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  ++I TPGR++DH  R  + ++ +  +V+DEAD ML+MGF   I+ + S VP  RQ
Sbjct: 121 KSGTQIVIGTPGRVMDHMRRKTMKLDFVHTVVLDEADEMLNMGFREDIEFVLSGVPEERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + ++++ F  N K I+V     T   IE  +     +  KK  +L +LL
Sbjct: 181 TVLFSATMPKPIMEITKKFQNNAKVIKVTKKELTVPNIEQYYYDVKPK--KKEEVLSRLL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               + +  ++FCN KK V  L ++L  +G+    +HG++ Q  R +++  F+ G  +++
Sbjct: 239 DIY-SPRLSVVFCNTKKQVDLLVNALLGRGYFAAGLHGDMKQEQRDRVMQGFRTGKTEIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V  VFN+D+P   E Y+HRIGRTGRAGR G+AF+ V+ +++  +  
Sbjct: 298 VATDVAARGIDVDEVEAVFNYDLPQDDEYYVHRIGRTGRAGREGRAFSFVSGKEVYKLKE 357

Query: 360 IEKLIEKKV 368
           I++  + K+
Sbjct: 358 IQRYCKTKI 366


>gi|303237006|ref|ZP_07323578.1| DEAD/DEAH box helicase [Prevotella disiens FB035-09AN]
 gi|302482786|gb|EFL45809.1| DEAD/DEAH box helicase [Prevotella disiens FB035-09AN]
          Length = 382

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 134/368 (36%), Positives = 225/368 (61%), Gaps = 8/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+S ++  A+ + G+ +P P+Q   IP +L   +DV  +AQTGTGKTA++ +P   
Sbjct: 4   FEELGVSEEIRHAIEELGFEQPMPVQEAVIPYLLGNGNDVIALAQTGTGKTAAYGIP--- 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
           +L+K     +  + LIL PTREL  Q+AD+   + K    L VA + GG   E Q+++L 
Sbjct: 61  VLQKVDPTKKETQALILSPTRELCLQIADDLSDFSKYIGGLHVAAVYGGASIEMQSRQLR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA +++ TPGR++D   RG   + N+  +V+DEAD ML+MGF   I  I   +P  R T
Sbjct: 121 KGAQIIVATPGRLIDLMKRGVAKLENVNNVVLDEADEMLNMGFTESINAIFEGIPSERNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E++K+++++L + K I V + +  AE + H +   +A+   K   L++++ 
Sbjct: 181 LLFSATMSKEIEKIAKSYLHDYKEIVVGSRNEGAEKVNHIYYMVHAK--DKYLALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++   IIFC  K     +   L + G++  A+HG++ Q+ R   +  F++  +Q +V
Sbjct: 239 YYPSI-FAIIFCRTKVETQEIADKLIRDGYNAEALHGDLSQQQRDLTMQKFRQHNVQFLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G + +++   +   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHTRERYKVREI 357

Query: 361 EKLIEKKV 368
           EK+I+ ++
Sbjct: 358 EKIIQPQI 365


>gi|313159432|gb|EFR58795.1| putative DEAD-box ATP-dependent RNA helicase CshA [Alistipes sp.
           HGB5]
          Length = 653

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 131/358 (36%), Positives = 214/358 (59%), Gaps = 7/358 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIP-LVLQRHDVCGIAQTGTGKTASFVLPML 60
           DF+ LGLS +++ AV   G+  PT IQ  TIP L+ + +D+   +QTGTGKTA++ LP+L
Sbjct: 6   DFSALGLSEQMLTAVRAKGFETPTAIQKLTIPHLLTKTNDIIAQSQTGTGKTAAYGLPIL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE  R  V+    +IL PTRELA Q A+    Y +   L++  + GG     Q ++L 
Sbjct: 66  QSLEPARGPVQ---AIILVPTRELALQAAEELLSYNREKRLSITAIYGGAAMSEQLRRLA 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TPGR+ DH  RG L + N+  LV+DEAD ML+MGF+  ++ I S     R+ 
Sbjct: 123 KGVDIVVGTPGRVRDHIRRGTLKLENVRYLVLDEADEMLNMGFVEDVEEIMSHTSEERRV 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + + ++S+ ++++ + + V     T +  E  +     + + K   L +++ 
Sbjct: 183 LLFSATMPERIIRLSKTYMRDTEIVRVENKQLTTDLTEQIYFEV--READKFDALTRIID 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +     GIIF   K         L  +G++   +HG++ Q  R KIL  F++ ++ ++V
Sbjct: 241 VEPEF-YGIIFARTKIGADETVSRLAARGYAAEVLHGDVSQAQREKILRKFRDRSVNILV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           A+D+AARG+D+ ++ HV N+ +P  +E+Y+HRIGRTGRAG+ G A T V+  + + ++
Sbjct: 300 ATDVAARGIDVGNLTHVINYSLPQDSESYVHRIGRTGRAGKQGTAITFVSPSEFRGLN 357


>gi|237751153|ref|ZP_04581633.1| DEAD-box ATP dependent DNA helicase [Helicobacter bilis ATCC 43879]
 gi|229373598|gb|EEO23989.1| DEAD-box ATP dependent DNA helicase [Helicobacter bilis ATCC 43879]
          Length = 518

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 142/359 (39%), Positives = 210/359 (58%), Gaps = 7/359 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  KV+  + +AG+  P+PIQ K IP +L+R DV   AQTGTGKTA+F LP+L  
Sbjct: 22  FRALGLKDKVLKGIKEAGFTTPSPIQEKAIPPILERRDVIAQAQTGTGKTAAFALPILHS 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   +       L++ PTRELA Q++D   K GK        + GG   + Q + +E+ 
Sbjct: 82  LKNDSS----IEALVITPTRELAMQISDEVFKLGKFLKTKTVCVYGGQSVKKQLELIEKK 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             VLI TPGR+LDH    +L      ++V+DE+D MLDMGFI  I+ I   +P   QTLL
Sbjct: 138 PQVLIATPGRLLDHLKNERLKNFAPNVVVLDESDEMLDMGFIDDIEEIFQYIPNNAQTLL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   ++++++  L +P  I++ + S+T   I   +       +++   L +L+ ++
Sbjct: 198 FSATMPARIKQLADKILYDPVHIKIQSSSTTNADIAQRYYII--NENERNEALTRLIDTE 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K+ IIF   KK    +   L+ +G+   A+HG++DQR R   +  FK     ++VA+
Sbjct: 256 SPSKS-IIFIRTKKEADEVNSYLQNKGYKSTALHGDMDQRMRRDSVQAFKGKEADILVAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           D+AARGLDI +V HVFN+ +P   E+Y+HRIGRTGRAG  G A TL    + K +  I+
Sbjct: 315 DVAARGLDIRNVSHVFNYHIPLNIESYVHRIGRTGRAGSKGVAITLATPLEYKDLKKIQ 373


>gi|282880561|ref|ZP_06289268.1| putative ATP-dependent RNA helicase DeaD [Prevotella timonensis
           CRIS 5C-B1]
 gi|281305664|gb|EFA97717.1| putative ATP-dependent RNA helicase DeaD [Prevotella timonensis
           CRIS 5C-B1]
          Length = 627

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 230/377 (61%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+S ++  A+ + G+V P P+Q + IP +L  ++DV  +AQTGTGKTA++ LP+L 
Sbjct: 4   FEELGVSEEIRRAIEELGFVHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAYGLPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++      +  + +IL PTREL  Q+AD+ + + K   NL V  + GG     Q   L+
Sbjct: 64  KID---VASKHTQAIILSPTRELCLQIADDLKDFAKYIKNLHVEPVYGGASIVTQIHALK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR++D  NRG   ++++  +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 HGAQIIVATPGRLIDLMNRGVAKLDHVNNVVLDEADEMLNMGFSESINTILAGVPDDRNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E++K+++ +L++ K I V + +  AE + H +    A+   K   L++++ 
Sbjct: 181 LLFSATMSKEIEKIAKTYLRDYKEIVVGSRNEGAENVNHIYYMVNAR--DKYLALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   IIFC  K     +   L K G++  A+HG++ Q+ R   +  F++   QL+V
Sbjct: 239 YYPRI-FAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHVTQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++ HV N+ +P+  ENY HR GRTGRAG+ G +  ++   +   + A+
Sbjct: 298 ATDVAARGLDVDELTHVINYGMPDDTENYTHRSGRTGRAGKKGTSICIIHTRERSKVRAV 357

Query: 361 EKLIEKKVDWLNGDLSS 377
           EK+I K  ++++G L +
Sbjct: 358 EKIIGK--EFVDGTLPT 372


>gi|262172263|ref|ZP_06039941.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus MB-451]
 gi|261893339|gb|EEY39325.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus MB-451]
          Length = 416

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 215/368 (58%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADL L P ++ A+ + G+ +PT +Q + IP  L   DV   A TGTGKTA+F +P L  
Sbjct: 5   FADLELDPVLLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIPALQY 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +    R LIL PTRELA QVA+  +   KN  L +  + GG+ ++     L  
Sbjct: 65  LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L++ +  +     IE L++DEADRMLDMGF P +  +++   + +QTL
Sbjct: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSAECRWRKQTL 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+    ++  + + L+NP  I+   P    + I   +         K  LL+++L 
Sbjct: 185 LFSATLEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWY-HRADDMPHKVELLKKILT 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   +  I+F   ++ + +L   LEK       I G + Q  R   ++ F+EG++ +++
Sbjct: 244 EQ--AERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFREGSVNILL 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+PD+ HV NFD+P  A+ Y+HRIGRTGRAG+ G A +LV   D   +  +
Sbjct: 302 ATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARV 361

Query: 361 EKLIEKKV 368
           E+ I+++V
Sbjct: 362 ERYIKEEV 369


>gi|262376303|ref|ZP_06069533.1| ATP-dependent RNA helicase rhlB [Acinetobacter lwoffii SH145]
 gi|262308904|gb|EEY90037.1| ATP-dependent RNA helicase rhlB [Acinetobacter lwoffii SH145]
          Length = 383

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 141/375 (37%), Positives = 222/375 (59%), Gaps = 14/375 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P +  A+   G+   TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 5   FETLNLHPNLKKAIDALGFTTMTPIQQKVLKFTLAGHDAIGRAQTGTGKTAAFLISIMND 64

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     ++ R R   PR LIL PTRELA Q+  + +   K   L V  L+GG+ F+ Q  
Sbjct: 65  LLNNPIQEQRYRGE-PRALILAPTRELALQIESDAQDLAKYAGLNVVTLLGGVDFDKQKN 123

Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +L +   D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P 
Sbjct: 124 QLNKAPVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPR 183

Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCA 233
              RQTL+FSAT + ++  +++ +L  P  +E+     T   +E   ++   A    K  
Sbjct: 184 KEQRQTLMFSATFSYDVLNLAQQWLFEPVTVEIEPEKKTNADVEQRVYMVAKAD---KYK 240

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LLQ++L+ +  ++  +IF N++  V  L   L++ G+ V  + G I Q  R+K+L  FK 
Sbjct: 241 LLQEILRDE-PIEKVMIFANRRDQVRKLYDHLKRDGYKVVMLSGEIAQDKRLKMLDQFKN 299

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +M+A+D+A RG+ +  V HV NF +P ++++Y+HRIGRTGRAG  G + + +A++D
Sbjct: 300 GKHNIMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGTSGVSISFLAEDD 359

Query: 354 IKHIDAIEKLIEKKV 368
             ++  IEK I +K+
Sbjct: 360 AFYLPEIEKAIGQKL 374


>gi|284038209|ref|YP_003388139.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
 gi|283817502|gb|ADB39340.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
          Length = 447

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 150/373 (40%), Positives = 218/373 (58%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  ++ A+ D GY  PT IQ K   +V+   DVCGIAQTGTGKT +++LP L
Sbjct: 1   MTFDELNLNKPLLNALNDLGYTTPTTIQQKVFSVVMSGQDVCGIAQTGTGKTFAYLLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++   ++ R P+ LI+ PTREL  QV D  +K     NLTV  + GG+  +AQ  ++ 
Sbjct: 61  RQMQ--FSKDRQPQLLIIVPTRELVVQVVDAVKKLTTYMNLTVVGVYGGVNMKAQTVEIM 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVL+ TPGR+ D    G L    I+ LVIDE D ML++GF   ++ +  L+P  RQ 
Sbjct: 119 QGLDVLVATPGRLADFMLGGTLKTKGIKKLVIDEFDEMLNLGFRAQLKVVLDLLPPKRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+TD++ ++  ++   P R+E     +  E I+         Y+ K  LL  LL 
Sbjct: 179 LLFSATLTDDVDQLVNDYFNKPVRVEAAPMGTPLEKIDQSGYRVPNFYT-KINLLTLLLN 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGF--SVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               M   ++F   K+    L   LE  GF   V  IH N  Q  R + ++NFK GT ++
Sbjct: 238 RNAAMTKVLVFVATKQLADQLFEQLE-SGFPDQVGVIHSNKAQNKRFEAVNNFKAGTYRI 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+ ARG+D+ DV HV NFD+P+  ENYIHRIGRTGRA R G A + + +   +  +
Sbjct: 297 LIATDIIARGIDVTDVSHVVNFDLPDLPENYIHRIGRTGRADREGIAVSFITESAREAQE 356

Query: 359 AIEKLIEKKVDWL 371
           AIE+L+ + +  L
Sbjct: 357 AIEQLMNQPIPML 369


>gi|301783663|ref|XP_002927245.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like
           [Ailuropoda melanoleuca]
 gi|281343724|gb|EFB19308.1| hypothetical protein PANDA_017010 [Ailuropoda melanoleuca]
          Length = 820

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      ++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q 
Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572

Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           +                          RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 573 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632

Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
               E +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK 
Sbjct: 633 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G++ C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+
Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHRIGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     A
Sbjct: 748 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 801

Query: 389 QHN 391
           QH 
Sbjct: 802 QHK 804


>gi|221064954|ref|ZP_03541059.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
 gi|220709977|gb|EED65345.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
          Length = 469

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 152/392 (38%), Positives = 226/392 (57%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LSP+++  +   GY + TPIQ  ++PL LQ  D+   A TG+GKTA+F LPM+  
Sbjct: 16  FSALPLSPEMLANLQQLGYAQMTPIQAASLPLTLQGKDLIAQASTGSGKTAAFGLPMVDR 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L     R    + L+L PTRELA QVA    +  +   N+ V  + GG+P   Q   LE 
Sbjct: 76  LNP---RWFAVQALVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRNQIASLEN 132

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++D   RGKL + N++ LV+DEADRMLDMGF+  I+ +    P  RQTL
Sbjct: 133 GAHIVVGTPGRVMDLMERGKLDIGNLKTLVLDEADRMLDMGFLGDIETVVRQCPVDRQTL 192

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + +  ++  F+++P+ ++V T  S A  IE  +    A+  +K A + +LL +
Sbjct: 193 LFSATYPEGIASLASRFMRDPQTVKVATQHS-AGKIEQRWYEVGAR--EKVATVARLL-A 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ I FCN K+   ++   L+ QGFS  A+ G ++QR R ++L  F   +  ++VA
Sbjct: 249 HFRPESSIAFCNTKQQCRDVVSELQAQGFSALALFGELEQRERDEVLVQFANKSCSVLVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V N DV    E +IHRIGRTGR    G A  LV+ +++  +  IE
Sbjct: 309 TDVAARGLDIADLSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLVSMDEMGSVGKIE 368

Query: 362 KLIEKKVDWLNGDL------SSLNPPLEKIDI 387
           +L  +   +   D         L PP+  I I
Sbjct: 369 QLQGRASQFFPVDELTPAAGGGLLPPMMTIQI 400


>gi|113971087|ref|YP_734880.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113885771|gb|ABI39823.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 461

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 143/364 (39%), Positives = 218/364 (59%), Gaps = 4/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY + T +Q + IPL L+  D+   AQTGTGKTASF LP+L
Sbjct: 1   MKFDTLGLSSPILNAIAECGYQQLTQVQQQVIPLALEGKDIMACAQTGTGKTASFALPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K  +   + R L++ PTRELA QV  N +KY +   L    + GG     Q K +E
Sbjct: 61  EQLSKQPSDKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+ D   +  L ++ +  LVIDEADRMLD+GF+  I+ +  L+    QT
Sbjct: 121 QGVDILVATPGRLFDIIGQFNLDLSTVTTLVIDEADRMLDLGFVRDIEKVKRLIATEHQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT +D ++++S   L  P+ + V   ++TA T+E   +       +K  LL +L+ 
Sbjct: 181 MLFSATYSDAVKQLSHKMLNQPEWVNV-AENATASTVEQ--LVYRVDKRRKAELLSELV- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  ++F + K+   +L   L   G S    HG+  Q +R ++L +FK G ++++V
Sbjct: 237 GRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N ++P  AE+Y+HRIGRTGRAG  G+A + V+  D + +  I
Sbjct: 297 ATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEI 356

Query: 361 EKLI 364
           E LI
Sbjct: 357 EALI 360


>gi|255089378|ref|XP_002506611.1| predicted protein [Micromonas sp. RCC299]
 gi|226521883|gb|ACO67869.1| predicted protein [Micromonas sp. RCC299]
          Length = 639

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 140/365 (38%), Positives = 210/365 (57%), Gaps = 21/365 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FAD+     +   +    +  PTP+Q   IP+ L+R D+   AQTG+GKTA+F  P++  
Sbjct: 187 FADIDFGAAINRNIQRCKFKNPTPVQKYAIPISLKRRDLMACAQTGSGKTAAFCFPIIHG 246

Query: 62  ILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           I+++G       R   P  L+L PTRELA Q+ +   K+     +   ++ GG P   Q 
Sbjct: 247 IIDRGLQAPRGGRKTFPIALVLSPTRELAIQIHEESRKFAYQTGVASVVVYGGAPAAQQF 306

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--- 173
           +++ERG D+LI TPGR++D  +R K+ +  I+ L +DEADRMLDMGF P I+ I      
Sbjct: 307 REMERGCDMLIATPGRLIDLVDRAKISLERIQYLALDEADRMLDMGFEPQIRQIVEQRGM 366

Query: 174 -VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST----AETIEHCFVATYAQY 228
             P  RQT+LFSAT   E+Q+++ +FLQ+   + V    S+     +TIE+        Y
Sbjct: 367 PPPGDRQTMLFSATFPKEIQRMASDFLQDYIFLTVGRVGSSHTLITQTIEYV-----QSY 421

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           + KC +L  L+ +   +   ++F   K+    L   L +QGF   +IHG+  Q+ R   L
Sbjct: 422 NDKCQMLMDLVHAVQGLT--LVFVETKRGADQLEDWLSQQGFPSTSIHGDRTQQEREWAL 479

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +F+ G   ++VA+D+AARGLDIP V HV NFD+P+  ++Y+HRIGRTGRAG+ G A   
Sbjct: 480 KSFRSGKTPILVATDVAARGLDIPHVTHVINFDLPSDVDDYVHRIGRTGRAGKKGLATAF 539

Query: 349 VAKED 353
              +D
Sbjct: 540 FTDKD 544


>gi|254428150|ref|ZP_05041857.1| DbpA RNA binding domain family [Alcanivorax sp. DG881]
 gi|196194319|gb|EDX89278.1| DbpA RNA binding domain family [Alcanivorax sp. DG881]
          Length = 551

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 147/371 (39%), Positives = 222/371 (59%), Gaps = 12/371 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   ++ A+   G+ +P+PIQ + IPL+L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FASLGLPEVLLTAIARQGFEQPSPIQAQAIPLLLDGHDLLGQAQTGTGKTAAFALPLLAR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     +R P+ LIL PTRELA QVA   E++ K+   L V  + GG  +  Q K L  
Sbjct: 68  LDPA---LREPQMLILAPTRELAIQVATACEEFAKDIKGLQVLPIYGGGEYRTQLKGLRG 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  RG + +NN++ LV+DEAD ML MGFI  ++ +    P   Q  
Sbjct: 125 GAQVIVGTPGRVMDHMERGSMKLNNLKALVLDEADEMLRMGFIDDVKWVLERTPDDCQLA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
           LFSATM   ++KV++  L+ PK + + N  ++T  TI   +  VA   +    C +L+  
Sbjct: 185 LFSATMPPVIRKVADQHLKQPKLVRIDNGGATTGTTIRQRYWPVAGLNKLDAVCRILEA- 243

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +  D +   ++F   K+  + L   L ++G    A++G+I Q+ R K +   K+    L
Sbjct: 244 -EEHDAV---LVFVRTKQATLELAEQLNRRGLRAEALNGDIPQQQREKTVQRLKDKRFDL 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+ ARGLD+P + HV N+D+P   E Y+HRIGRTGRAGR G A   VA+ +   + 
Sbjct: 300 LIATDVVARGLDVPRITHVVNYDMPGDPEAYVHRIGRTGRAGRQGDAILFVARREQHVLR 359

Query: 359 AIEKLIEKKVD 369
            IE++  + ++
Sbjct: 360 QIERITRQSIE 370


>gi|288929803|ref|ZP_06423646.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288328904|gb|EFC67492.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 636

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 140/377 (37%), Positives = 228/377 (60%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+S  +  A+ + G+ +P P+Q + IP +L   +DV  +AQTGTGKTA++ +P   
Sbjct: 4   FKELGVSEPICRAIEELGFEQPMPVQEEVIPYLLGNGNDVIALAQTGTGKTAAYGIP--- 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           +L+K     +  + LIL PTREL  Q+AD+   + K    L V  + GG   E Q ++L 
Sbjct: 61  VLQKVNPEEKHTQALILSPTRELCLQIADDLADFSKYVQGLHVVPVYGGASIEMQIRQLR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA +++ TPGR++D   RG   ++N+  +V+DEAD ML+MGF   I  I   VP  R T
Sbjct: 121 KGAQIIVATPGRLIDLMKRGVAQLDNVNNVVLDEADEMLNMGFTESINAIFEGVPADRNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E++K+++N+L + K I V + +  AE + H +    A+   K   L++L+ 
Sbjct: 181 LLFSATMSREIEKIAKNYLNDYKEIVVGSRNEGAEKVNHIYYMVNAK--DKYLALKRLVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   IIFC  K     +   L + G++  A+HG++ Q+ R   +  F+   +Q +V
Sbjct: 239 FYPRI-FAIIFCRTKLETQEIADKLIRDGYNAEALHGDLSQQQRDLTMQKFRNHNVQFLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G + +++   +   + AI
Sbjct: 298 ATDVAARGLDVDDLTHVVNYGLPDDIESYTHRSGRTGRAGKKGTSISIIHTRERSKVRAI 357

Query: 361 EKLIEKKVDWLNGDLSS 377
           EK+I+K  ++++G L +
Sbjct: 358 EKIIQK--EFVDGTLPT 372


>gi|326430393|gb|EGD75963.1| vasa [Salpingoeca sp. ATCC 50818]
          Length = 873

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 141/351 (40%), Positives = 207/351 (58%), Gaps = 3/351 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA  G    ++  +   G+ +PTPIQ + +P V+   DV GIA+TG+GKTA+FV PM+
Sbjct: 294 VSFAYFGFDDVMMQLIQRQGFAQPTPIQAQAVPTVMSGRDVIGIAETGSGKTAAFVWPMI 353

Query: 61  T-ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             IL++    R   P  ++L PTREL  Q++ N  +Y K+YN+ VA + GG     Q K 
Sbjct: 354 KHILDQPDLKRGDGPIAVLLAPTRELCMQISQNTRRYAKHYNIRVATVYGGGSRYEQVKT 413

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G +V++ TPGR++D        +  +  LV+DEADRM DMGF   + +I +     R
Sbjct: 414 LKDGCEVVVATPGRLIDLIKDKATNLRRVTYLVLDEADRMFDMGFSLQVNSIINHTRPDR 473

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLF+AT   +++K++   L+NP RI V T       IE   V      + K   L+  
Sbjct: 474 QTLLFTATFKKKVEKLARQALRNPVRIVVGTVGKANTDIEQR-VEIMQDTASKWGWLKAH 532

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L    +  N ++F N+K +   L  S+   GF    IHG+IDQ +R ++LS FK+ T+++
Sbjct: 533 LVEMQSAGNVLVFVNKKADAETLHESMVAAGFQAVVIHGDIDQITRQEVLSKFKKQTVRI 592

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +VA+D+AARGLDIP V +V NFD     + + HRIGRTGRAG  G A+TL+
Sbjct: 593 LVATDVAARGLDIPSVRNVVNFDAAMSIDTHTHRIGRTGRAGVKGTAWTLL 643


>gi|73996610|ref|XP_862993.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 3 [Canis familiaris]
 gi|119578414|gb|EAW58010.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, isoform CRA_a [Homo
           sapiens]
          Length = 634

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 152/422 (36%), Positives = 228/422 (54%), Gaps = 43/422 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 207 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 266

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      ++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q 
Sbjct: 267 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 326

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 327 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 386

Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           +                          RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 387 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 446

Query: 211 SSTAETIEH-CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269
               E +E   F+ + ++  KK  LL  L Q  D     IIF NQKK    L  SLEK G
Sbjct: 447 GKPHERVEQKVFLMSESEKRKK--LLAILEQGFDP--PIIIFVNQKKGCDVLAKSLEKMG 502

Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329
           ++ C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+Y
Sbjct: 503 YNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDY 562

Query: 330 IHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
           IHRIGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     AQ
Sbjct: 563 IHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQ 616

Query: 390 HN 391
           H 
Sbjct: 617 HK 618


>gi|260550927|ref|ZP_05825133.1| II DNA and RNA helicase [Acinetobacter sp. RUH2624]
 gi|260406054|gb|EEW99540.1| II DNA and RNA helicase [Acinetobacter sp. RUH2624]
          Length = 383

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 143/374 (38%), Positives = 223/374 (59%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++  A+   G+ + TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 5   FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     ++ R R   PR LIL PTRELA Q+  + +   K  NL +  L+GG+ F+ Q K
Sbjct: 65  LLNNPVKEQRFRGE-PRALILAPTRELALQIESDAKFLTKFSNLHLVTLLGGVDFDKQKK 123

Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +L+    D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P 
Sbjct: 124 QLDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPR 183

Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTL+FSAT + ++  ++  +L  P  +E+     T   +E        Q   K  L
Sbjct: 184 KEQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQ--DKYRL 241

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ +L+ ++ +   +IF N++  V  L   L+K G+ V  + G I Q  R+K+L  FK+G
Sbjct: 242 LQDILR-EEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQG 300

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +M+A+D+A RG+ +  V HV NF +P ++++Y+HRIGRTGRAG  G + + ++++D 
Sbjct: 301 KHNIMIATDVAGRGIHVDGVSHVINFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDA 360

Query: 355 KHIDAIEKLIEKKV 368
            ++  IEK I KK+
Sbjct: 361 FYLPEIEKAIGKKL 374


>gi|254230204|ref|ZP_04923597.1| ATP-dependent RNA helicase RhlB [Vibrio sp. Ex25]
 gi|262392870|ref|YP_003284724.1| ATP-dependent RNA helicase RhlB [Vibrio sp. Ex25]
 gi|151937289|gb|EDN56154.1| ATP-dependent RNA helicase RhlB [Vibrio sp. Ex25]
 gi|262336464|gb|ACY50259.1| ATP-dependent RNA helicase RhlB [Vibrio sp. Ex25]
          Length = 439

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 146/382 (38%), Positives = 221/382 (57%), Gaps = 9/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FADLGL P+V+  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADLGLKPQVIEGLDKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT  E    +   PR +I+ PTRELA Q+ ++ E   ++  L  AL  GG  ++ Q  K
Sbjct: 71  LLTTPEHEGRKPTQPRAIIMAPTRELAIQIYNDAEALTESTGLKTALAYGGESYDKQLNK 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+LI T GRI+D + +    +NNI+ +V+DEADRM D+GFI  I+ +   +P  +
Sbjct: 131 LQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + L  LFSAT++  +Q+++   +  P+ + V     T   I+      Y     K ALLQ
Sbjct: 191 ERLNMLFSATLSYRVQELAFEHMNTPEHVVVEPEQKTGHRIQEELF--YPSNEDKMALLQ 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R KIL  F +G +
Sbjct: 249 TLIE-EEWPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDV 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   +
Sbjct: 308 DILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAIN 367

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
           + AIE+ IE  +     D S+L
Sbjct: 368 LPAIEEYIEHTIPVSEYDSSAL 389


>gi|121728399|ref|ZP_01681427.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V52]
 gi|147674594|ref|YP_001216154.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
 gi|153215838|ref|ZP_01950170.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 1587]
 gi|153802013|ref|ZP_01956599.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-3]
 gi|153829171|ref|ZP_01981838.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 623-39]
 gi|229512921|ref|ZP_04402388.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TMA 21]
 gi|229525313|ref|ZP_04414718.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae bv. albensis
           VL426]
 gi|229530466|ref|ZP_04419854.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 12129(1)]
 gi|254226532|ref|ZP_04920115.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V51]
 gi|254291900|ref|ZP_04962682.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae AM-19226]
 gi|262169959|ref|ZP_06037649.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC27]
 gi|262191213|ref|ZP_06049412.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae CT 5369-93]
 gi|297580786|ref|ZP_06942712.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC385]
 gi|121629333|gb|EAX61765.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V52]
 gi|124114555|gb|EAY33375.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 1587]
 gi|124122472|gb|EAY41215.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-3]
 gi|125620936|gb|EAZ49287.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V51]
 gi|146316477|gb|ABQ21016.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
 gi|148875360|gb|EDL73495.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 623-39]
 gi|150422186|gb|EDN14151.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae AM-19226]
 gi|227012485|gb|ACP08695.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
 gi|229332239|gb|EEN97727.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 12129(1)]
 gi|229338894|gb|EEO03911.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae bv. albensis
           VL426]
 gi|229350170|gb|EEO15123.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TMA 21]
 gi|259156570|gb|ACV96513.1| ATP-dependent RNA helicase SrmB [Vibrio fluvialis Ind1]
 gi|262021693|gb|EEY40404.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC27]
 gi|262032915|gb|EEY51454.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae CT 5369-93]
 gi|297535202|gb|EFH74037.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC385]
 gi|327483459|gb|AEA77866.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae LMA3894-4]
          Length = 423

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 215/368 (58%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADL L P ++ A+ + G+ +PT +Q + IP  L   DV   A TGTGKTA+FV+P L  
Sbjct: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +    R LIL PTRELA QVA+  +   KN  L +  + GG+ ++     L  
Sbjct: 65  LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L++ +  +     IE L++DEADRMLDMGF P +  +++   + +QTL
Sbjct: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTL 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+    ++  + + L++P  ++   P    + I   +         K  LL+++L 
Sbjct: 185 LFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWY-HRADDMPHKVELLKKILT 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   +  I+F   ++ + +L   LEK       I G + Q  R   +S F+EG + +++
Sbjct: 244 EQ--AERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILL 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+PD+ HV NFD+P  A+ Y+HRIGRTGRAG+ G A +LV   D   +  +
Sbjct: 302 ATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARV 361

Query: 361 EKLIEKKV 368
           E+ I+++V
Sbjct: 362 ERYIKEEV 369


>gi|15640680|ref|NP_230309.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121587852|ref|ZP_01677609.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 2740-80]
 gi|153818685|ref|ZP_01971352.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae NCTC 8457]
 gi|153822294|ref|ZP_01974961.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|227080841|ref|YP_002809392.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae M66-2]
 gi|229505718|ref|ZP_04395228.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae BX 330286]
 gi|229508708|ref|ZP_04398201.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|229519543|ref|ZP_04408986.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC9]
 gi|229608737|ref|YP_002879385.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MJ-1236]
 gi|254850991|ref|ZP_05240341.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MO10]
 gi|255743880|ref|ZP_05417836.1| ATP-dependent RNA helicase SrmB [Vibrio cholera CIRS 101]
 gi|262156099|ref|ZP_06029218.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae INDRE 91/1]
 gi|298500776|ref|ZP_07010579.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MAK 757]
 gi|9655098|gb|AAF93826.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547888|gb|EAX57972.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 2740-80]
 gi|126510765|gb|EAZ73359.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae NCTC 8457]
 gi|126520190|gb|EAZ77413.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|227008729|gb|ACP04941.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae M66-2]
 gi|229344232|gb|EEO09207.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC9]
 gi|229354232|gb|EEO19162.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|229357941|gb|EEO22858.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae BX 330286]
 gi|229371392|gb|ACQ61815.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MJ-1236]
 gi|254846696|gb|EET25110.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MO10]
 gi|255738511|gb|EET93900.1| ATP-dependent RNA helicase SrmB [Vibrio cholera CIRS 101]
 gi|262030135|gb|EEY48780.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae INDRE 91/1]
 gi|297540557|gb|EFH76615.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MAK 757]
          Length = 423

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 215/368 (58%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADL L P ++ A+ + G+ +PT +Q + IP  L   DV   A TGTGKTA+FV+P L  
Sbjct: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +    R LIL PTRELA QVA+  +   KN  L +  + GG+ ++     L  
Sbjct: 65  LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L++ +  +     IE L++DEADRMLDMGF P +  +++   + +QTL
Sbjct: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTL 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+    ++  + + L++P  ++   P    + I   +         K  LL+++L 
Sbjct: 185 LFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWY-HRADDMPHKVELLKKILT 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   +  I+F   ++ + +L   LEK       I G + Q  R   +S F+EG + +++
Sbjct: 244 EQ--AERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILL 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+PD+ HV NFD+P  A+ Y+HRIGRTGRAG+ G A +LV   D   +  +
Sbjct: 302 ATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARV 361

Query: 361 EKLIEKKV 368
           E+ I+++V
Sbjct: 362 ERYIKEEV 369


>gi|255319460|ref|ZP_05360674.1| ATP-dependent RNA helicase RhlB [Acinetobacter radioresistens SK82]
 gi|262378516|ref|ZP_06071673.1| superfamily II DNA and RNA helicase [Acinetobacter radioresistens
           SH164]
 gi|255303400|gb|EET82603.1| ATP-dependent RNA helicase RhlB [Acinetobacter radioresistens SK82]
 gi|262299801|gb|EEY87713.1| superfamily II DNA and RNA helicase [Acinetobacter radioresistens
           SH164]
          Length = 383

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 143/376 (38%), Positives = 229/376 (60%), Gaps = 16/376 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L PK+  A+   G+ + TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 5   FETLNLHPKLKKAIDALGFKEMTPIQQKVLNYTLAGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     ++ R R    R LIL PTRELA Q+  + ++  K  +L +  L+GG+ F+ Q K
Sbjct: 65  LLNNPIKEQRYRGE-ARALILAPTRELALQIESDAKELTKFTDLHLVTLLGGVDFDKQKK 123

Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +L++   D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P 
Sbjct: 124 QLDQNFVDIIVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPR 183

Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKC 232
              RQTL+FSAT + ++  +++ +L  P  +E+     T   +E     VA   +Y    
Sbjct: 184 KEQRQTLMFSATFSYDVLNLAQQWLFEPVTVEIEPEKKTNADVEQRVYMVANRDKYK--- 240

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LLQ++L+ +  ++  +IF N++  V  L   L+K G+ V  + G I Q  R+K+L  FK
Sbjct: 241 -LLQEILRDE-PIEKVMIFANRRDQVRRLYDHLKKDGYKVVMLSGEIAQDKRLKMLDQFK 298

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +M+A+D+A RG+ + +V HV NF +P ++++Y+HRIGRTGRAG  G + + ++++
Sbjct: 299 NGKHNIMIATDVAGRGIHVDNVSHVINFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSED 358

Query: 353 DIKHIDAIEKLIEKKV 368
           D  ++ AIEK I +K+
Sbjct: 359 DAFYLPAIEKAIGQKL 374


>gi|86134570|ref|ZP_01053152.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
 gi|85821433|gb|EAQ42580.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
          Length = 450

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 144/372 (38%), Positives = 213/372 (57%), Gaps = 4/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS ++  A+ D G+  PTPIQ +   +V    DV GIAQTGTGKT ++++P+L
Sbjct: 1   MTFKELDLSNQLQYAIEDLGFENPTPIQEQAFSVVRSGKDVVGIAQTGTGKTFAYMMPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+   ++ + PR L+L PTREL  QV D  EK  K  N  V  + GG     Q + + 
Sbjct: 61  RDLK--FSKQKHPRVLVLVPTRELVVQVVDEIEKLSKYINTRVLGVYGGTNINTQKQAIL 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TPGR+ D      L + +I+ LVIDE D MLD+GF   + NI  ++P  RQ 
Sbjct: 119 QGQDIIVATPGRLYDLGLSNALKLKSIQKLVIDEVDVMLDLGFRFQLMNIFDILPERRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+++ ++  +F +NP++I +    +    IE         +  K  LL  LL 
Sbjct: 179 VLFSATMTEDVDELIYDFFKNPEKISIAVSGTPLNNIEQI-SYNVPNFFTKVNLLNHLLS 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQ-GFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++T    +IF   K+    L   LE+  G   C IH N  Q  R++ +  F EG  +++
Sbjct: 238 DKETYNKVLIFVGFKRTADYLFKHLEEVFGSETCVIHSNKTQNYRIRSIRQFDEGNNRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD  +V HV NFD P+  ENY+HRIGRTGRA + GK   L   ++ +  + 
Sbjct: 298 VATDVMARGLDFDNVSHVINFDTPDFPENYMHRIGRTGRAEKAGKTILLSTAKEQEAKEE 357

Query: 360 IEKLIEKKVDWL 371
           IE L++ K+  L
Sbjct: 358 IEALMDYKIPLL 369


>gi|331698451|ref|YP_004334690.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953140|gb|AEA26837.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 504

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 147/415 (35%), Positives = 225/415 (54%), Gaps = 16/415 (3%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA+LGL P+ V   LDA G+  P PIQ  T+P+ L   D+ G  QTG+GKT +F L +L+
Sbjct: 64  FAELGL-PEAVLRTLDAEGFTAPFPIQAATLPVTLAGRDLLGRGQTGSGKTLAFGLALLS 122

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L  GRA  R PR L+L PTRELA QV D  + + +   L  A ++GG+ F  Q   L R
Sbjct: 123 RLAGGRAVARRPRGLVLVPTRELAQQVVDALDPFARALGLRAAAVVGGLSFNRQADALAR 182

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+L+ TPGR+ DH N+    ++ IE+  IDEADRM DMGF+P ++ I  L P   Q L
Sbjct: 183 GVDLLVATPGRLTDHTNQRTADLSGIEVTAIDEADRMADMGFLPQVRAILDLTPADGQRL 242

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++  +   +L +P    V + +   +T++H  +        K  ++ ++   
Sbjct: 243 LFSATLDGDVAALVSRYLHDPVTRAVASATGAVDTMDHHLL--LVDSVTKARVVAEI--- 297

Query: 242 QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               ++G  I+F   K  V     +L + G S   +HG   Q  R + +++FKEG   ++
Sbjct: 298 --AARDGRTILFARTKHGVDRWVRNLRRDGVSAAGLHGGKSQNQRNRAIADFKEGRTPVL 355

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+ + DV  V + D P   ++Y+HR GRT R G  G   TLV  E+ + +D 
Sbjct: 356 VATDVAARGIHVDDVSLVVHIDPPGDPKDYLHRAGRTARGGESGTVVTLVTPEERRDVDT 415

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKK 411
           + +  +  V     D +  +  L+++  A+        +  P PQ+  G  RR +
Sbjct: 416 LTR--QAGVRPTVHDAAPGSATLQRVTGAREPSGIAVVEPRPAPQQPRGQGRRSR 468


>gi|319902155|ref|YP_004161883.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
 gi|319417186|gb|ADV44297.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
          Length = 415

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 223/371 (60%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+ +V+ A+    + + TPIQ K+IP++L+  D+  +AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELQLNDQVLDALDAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             L +G+        +I+ PTRELA Q+    E +     ++   + GG   I FE Q K
Sbjct: 61  NNLSEGKHPEDSINCIIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSRVTYFILDEADRMLDMGFYDDIMQIVKFLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++ N L NP  +++       + ++  +V    Q   K  +++ 
Sbjct: 181 RQTIMFSATMPTKIQQLANNILNNPAEVKLAVSKPADKIVQAAYVCYENQ---KLGIIRN 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   Q T +  IIF + K  V  +  +L++   +V  +H +++Q  R  ++  FK G I 
Sbjct: 238 LFAEQ-TPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREDVMYEFKAGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T +++++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQTNF 356

Query: 358 DAIEKLIEKKV 368
             IEK +EK +
Sbjct: 357 KNIEKFLEKDI 367


>gi|114048321|ref|YP_738871.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113889763|gb|ABI43814.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 461

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 143/364 (39%), Positives = 218/364 (59%), Gaps = 4/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY + T +Q + IPL L+  D+   AQTGTGKTASF LP+L
Sbjct: 1   MKFDTLGLSSPILNAIAECGYQQLTQVQQQVIPLALEGKDIMACAQTGTGKTASFALPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K  +   + R L++ PTRELA QV  N +KY +   L    + GG     Q K +E
Sbjct: 61  EQLSKQPSDKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+ D   +  L ++ +  LVIDEADRMLD+GF+  I+ +  L+    QT
Sbjct: 121 QGVDILVATPGRLFDIIGQFNLDLSTVTTLVIDEADRMLDLGFVRDIEKVKRLIATEHQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT +D ++++S   L  P+ + V   ++TA T+E   +       +K  LL +L+ 
Sbjct: 181 MLFSATYSDAVKQLSHKMLNQPEWVNV-AENATASTVEQ--LVYRVDKRRKAELLSELV- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  ++F + K+   +L   L   G S    HG+  Q +R ++L +FK G ++++V
Sbjct: 237 GRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N ++P  AE+Y+HRIGRTGRAG  G+A + V+  D + +  I
Sbjct: 297 ATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEI 356

Query: 361 EKLI 364
           E LI
Sbjct: 357 EALI 360


>gi|188587876|ref|YP_001920681.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498157|gb|ACD51293.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 480

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 220/368 (59%), Gaps = 6/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    LS +++ A+ + GY  P+ +Q K IP +L+  D+   +QTG+GKTASF +P+  
Sbjct: 4   EFNKFELSGELLKAIDNLGYKTPSEVQEKAIPEILRNKDLVVKSQTGSGKTASFGIPLCE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +   P+ L+L PTRELA Q++++    G+   +    + G      Q +KL++
Sbjct: 64  KIDWDENK---PQVLVLAPTRELAVQISEDISNIGRYKRINCVPIFGKQSIMDQERKLKQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH +RG L ++ I   VIDEAD ML+MGFI  ++ I   +P  R TL
Sbjct: 121 KTHIVVGTPGRVLDHIDRGSLDVSKINYFVIDEADEMLNMGFIKQVEAIIRRIPKKRVTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ DE++ + +  +  P  I + + + T++ + H   A +  Y++K  LL  +L S
Sbjct: 181 LFSATIPDEIKNLCDKHMNRPIDIAIKSQNLTSDNVSH--YAYHVGYNQKLDLLNNILIS 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  ++FC  K+NV  +   L K+G+S   IHG + Q+ R+  +  F+ G  +++VA
Sbjct: 239 E-MPETSVVFCRTKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFRILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RG+DI  + HV N+D+P   E Y+HRIGRTGRAG  G A T       ++++ IE
Sbjct: 298 TDIASRGIDIEGITHVINYDIPVEKEAYVHRIGRTGRAGAKGVALTFCKDSGDRYLNEIE 357

Query: 362 KLIEKKVD 369
           + I  K++
Sbjct: 358 EYIGFKLE 365


>gi|167384217|ref|XP_001736854.1| ATP-dependent rRNA helicase RRP3 [Entamoeba dispar SAW760]
 gi|165900561|gb|EDR26857.1| ATP-dependent rRNA helicase RRP3, putative [Entamoeba dispar
           SAW760]
          Length = 432

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 150/374 (40%), Positives = 224/374 (59%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL P+V+  V   GY KPT IQ  +IP+ LQ+ D+ GIAQTG+GKTASF+LPM+  
Sbjct: 11  FKDLGLIPEVLKVVEYLGYKKPTKIQENSIPVALQKKDIIGIAQTGSGKTASFLLPMIQH 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L   + + R    +I+EPTRELAAQV +  ++ GK    L   LL+GG+    Q+ +L +
Sbjct: 71  LLNVKEKNRAFYCIIIEPTRELAAQVVEVLDEIGKALPGLMSCLLVGGMDVMKQSVQLAK 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIE---ILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              V++ TPGRI+ H    K +  +I+    LVIDEAD++L+M F   I  +   +P  R
Sbjct: 131 RPHVIVGTPGRIVYHIKNTKGVEESIQKVKFLVIDEADKLLEMDFANEIDYLIEKLPSQR 190

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRI-EVNTPSSTAETI--EHCFVATYAQYSKKCALL 235
            T+LFSATM+ +++K+    L +P +I E      T +T+  E+CF+     +  +   L
Sbjct: 191 TTMLFSATMSTKVEKLQRASLTHPVKIKEEEQKYQTVDTLRQEYCFIP----FKYRDGYL 246

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +L+  +  K+ IIF  +      L   L + G++   +HG + Q+ R+  L  FK G 
Sbjct: 247 LSILKETEG-KSIIIFTMKCSGCTKLVMMLRQLGYAAIPLHGKMSQQKRLIALEKFKSGK 305

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+D+A+RGLDIP+V  V N+D P   ++YIHR+GRT RAG+ G A TLV +  I+
Sbjct: 306 RGILVATDVASRGLDIPNVDIVINYDCPLEPKDYIHRVGRTARAGKSGYAITLVTQYSIE 365

Query: 356 HIDAIEKLIEKKVD 369
               IE +IEKK++
Sbjct: 366 LYQRIETMIEKKLN 379


>gi|150016695|ref|YP_001308949.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903160|gb|ABR33993.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 480

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 135/371 (36%), Positives = 216/371 (58%), Gaps = 6/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    +S +++ ++   GY  P+ +Q K IP +L   D+   +QTG+GKTA+F +P+  
Sbjct: 4   EFTKFKISDEILKSIEGLGYKNPSKVQEKVIPEILLNKDIIVKSQTGSGKTAAFGIPLC- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             EK      +P+ L+L PTRELA QV+++    G+   +    + G  P   Q +KL++
Sbjct: 63  --EKVDWNENIPQILVLTPTRELAVQVSEDITNIGRFKRIKSVSIFGKEPISEQERKLKQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGRILDH +RG L +  I+  VIDEAD ML+MGFI  ++ I   +P  + T+
Sbjct: 121 KTHVVVGTPGRILDHIDRGSLNLAQIKYFVIDEADEMLNMGFIGQVEGIIRRLPKKKVTM 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ +E++ + + ++  P  I +N      E I+H     Y  Y +K   L  +L +
Sbjct: 181 LFSATIPEEIKVLCDKYMNKPVDISINNQKLINENIDHNLY--YTNYEEKIEKLNDILIT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  +IF   K+NV  +   L+ +G+SV  IHG + Q+ R+ I+  F+ G  +++V+
Sbjct: 239 EKP-ETVVIFAKTKENVDTVFQWLKSKGYSVNRIHGGMLQKERLSIMDGFRLGDFRILVS 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLA+RG+D+  + HV N+D+P   E Y+HRIGRTGRAG  GKA +    E  K +  IE
Sbjct: 298 TDLASRGIDVKGITHVINYDLPVEKEAYVHRIGRTGRAGEKGKAISFCVNEKDKLLSEIE 357

Query: 362 KLIEKKVDWLN 372
           + I  K+   N
Sbjct: 358 EFIGFKIPVYN 368


>gi|227505531|ref|ZP_03935580.1| ATP-dependent RNA helicase [Corynebacterium striatum ATCC 6940]
 gi|227197895|gb|EEI77943.1| ATP-dependent RNA helicase [Corynebacterium striatum ATCC 6940]
          Length = 442

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 142/357 (39%), Positives = 217/357 (60%), Gaps = 7/357 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA LG++ ++V A+   G V+   IQ  T+P+ L   D+ G A+TG GKT  F +P+L  
Sbjct: 14  FAALGVAAEIVDALASRGIVRTFAIQELTLPIALGGQDLIGQARTGMGKTLGFGVPVLDR 73

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + +          PR LI+ PTRELA QV ++     +N  L +A + GG P+E Q K L
Sbjct: 74  VFDDADIEELDGTPRALIVVPTRELAVQVGEDLTLASQNLPLRLATIYGGRPYEEQIKLL 133

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
           E+G DV++ TPGR+LD   +G L ++++ ILV+DEAD MLD+GF+P I+ I  L+   + 
Sbjct: 134 EKGVDVIVGTPGRLLDLAQQGHLQLDHVAILVLDEADEMLDLGFLPDIEKILELLHGNKH 193

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQ 237
           QT+LFSATM   +  ++  F+  P  I   +     +T E     T+ A    K A++ +
Sbjct: 194 QTMLFSATMPGPILTLARTFMNRPIHIRAESGDEN-QTHESTRKVTFQAHRMDKLAIISR 252

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            LQ++   K  IIF   K++   +   L ++GF V A+HG++ Q +R K L+ F+EG ++
Sbjct: 253 ALQAKGRGKT-IIFARTKRSAAEVADELARRGFRVGAVHGDLGQAAREKSLNAFREGKVE 311

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           ++VA+D+AARG+D+ DV HV N+ VP+    ++HRIGRTGRAG  G A TLV  +++
Sbjct: 312 ILVATDVAARGIDVDDVTHVINYQVPDDPMTFVHRIGRTGRAGHTGTAVTLVGYDEL 368


>gi|170718456|ref|YP_001783672.1| ATP-dependent RNA helicase SrmB [Haemophilus somnus 2336]
 gi|168826585|gb|ACA31956.1| DEAD/DEAH box helicase domain protein [Haemophilus somnus 2336]
          Length = 444

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 141/402 (35%), Positives = 225/402 (55%), Gaps = 14/402 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  L+P+++ A+   GY +PT IQ+  IP +++  DV G A TGTGKTA+F+LP L  
Sbjct: 10  FEDFDLAPQLLKALAQKGYSRPTVIQLDAIPAIMEARDVLGSAPTGTGKTAAFLLPALQH 69

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR L+L PTRELA QVA+  E+  +  +L++A + GG+ ++   +   +
Sbjct: 70  LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLSIATITGGVAYQNHGEVFNK 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +          +EIL+ DEADRML MGF  Y + I +   + RQTL
Sbjct: 130 NQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQYAEEIAAETRWRRQTL 189

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  E L   +   L++P +          + I   +    +    K  LL + ++
Sbjct: 190 LFSATLEGELLMDFASRLLKDPVQFNAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   + GI+F  +++NV  L   L K+G     + G + Q  R K +   K   + ++V
Sbjct: 249 NEQVSR-GIVFVRRRENVRELSEILRKRGIRSTYLEGEMAQTQRTKAIDKLKNDVVTVLV 307

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HR+GRT RAG+ G A + V   D K +  I
Sbjct: 308 ATDVAARGIDIDDVSHVMNFDLPYNADTYLHRVGRTARAGKKGTAVSFVEAHDYKLLGKI 367

Query: 361 EK----LIEKKVDWLNGDLSSLNPP----LEKIDIAQHNHAR 394
           ++    L++ ++  + G     NPP    ++ +   Q N A+
Sbjct: 368 KRYTGELLKPRI--IEGLEPRTNPPKDGEIKTVSKKQKNRAK 407


>gi|160871634|ref|ZP_02061766.1| dead/deah box helicase [Rickettsiella grylli]
 gi|159120433|gb|EDP45771.1| dead/deah box helicase [Rickettsiella grylli]
          Length = 421

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 154/431 (35%), Positives = 233/431 (54%), Gaps = 26/431 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +   + +++  +   GY   TPIQIK IP +LQ  DV G+AQTGTGKTA++ LP+L
Sbjct: 1   MNFTEFNFNTQILSGIQTQGYRTATPIQIKAIPAILQGRDVVGLAQTGTGKTAAYALPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             L +G       R LIL PTR+LA Q+      +G+  +L  A + GG I +  Q + L
Sbjct: 61  QQLTEGPPG--QLRALILSPTRDLADQICVAMNHFGRQTHLRCATIYGGKINYTRQYQLL 118

Query: 120 ERGADVLICTPGRILDHFNRGKL-LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             G D+++  PGR+LD     K   +  ++ LV+DEAD + D GF   I +I   +P  R
Sbjct: 119 TGGVDIIVACPGRLLDLLQGKKNNFLQQVKHLVLDEADHLFDHGFRDAIYHILKHLPPRR 178

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSATM+ +++ + +  L  P RI++  P       +  F  +    + K  LL+ +
Sbjct: 179 QNLLFSATMSADIRLLIDKVLHRPVRIQIGEPKPAVTITQTLFPVSE---TLKVNLLETI 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ+  ++ + IIF   K     L   L   G+   +  GN+ Q  R   L  F++G ++ 
Sbjct: 236 LQNH-SIHSAIIFTRTKHRAQCLAEHLRDLGYKATSFQGNLSQSRRKTALGKFRQGELKF 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV NFD+PN A  Y HRIGRTGRA + G AF+L+ K D + I 
Sbjct: 295 LVATDVAARGIDIDHLSHVINFDMPNTAIEYTHRIGRTGRADKLGMAFSLITKNDRRKIQ 354

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           +IE L +K+              LE+  IA+ ++  K NP  +    + R+  +Y     
Sbjct: 355 SIEHLQKKR--------------LEECIIAEFDYHAKINPSMEPLNAYRRKPLSY----P 396

Query: 419 HIPLKESEKIS 429
           H P    +KI+
Sbjct: 397 HSPSTSRKKIA 407


>gi|1169228|sp|P46942|DB10_NICSY RecName: Full=ATP-dependent RNA helicase-like protein DB10
 gi|563986|dbj|BAA03763.1| RNA helicase like protein DB10 [Nicotiana sylvestris]
          Length = 607

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 137/367 (37%), Positives = 214/367 (58%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G   ++V  +  AG+  PTPIQ ++ P+ LQ  D+  IA+TG+GKT  +++P    
Sbjct: 147 FEATGFPSEIVREMHQAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLMPAFIH 206

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L++ R   ++ P  L+L PTRELA Q+     K+GK+  ++   L GG P   Q ++L R
Sbjct: 207 LQQRRKNPQLGPTILVLSPTRELATQIQAEAVKFGKSSRISCTCLYGGAPKGPQLRELSR 266

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR+ D     ++ +  +  LV+DEADRMLDMGF P I+ I   VP  RQTL
Sbjct: 267 GVDIVVATPGRLNDILEMRRVSLGQVSYLVLDEADRMLDMGFEPQIRKIVKEVPVQRQTL 326

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPS---STAETIEHCFVATYAQYSKKCALLQQL 238
           +++AT    ++K++ + L N  ++ +       +     +H  V    +  ++   ++Q+
Sbjct: 327 MYTATWPKGVRKIAADLLVNSVQVNIGNVDELVANKSITQHIEVVLPMEKQRR---VEQI 383

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+S++     IIFC+ KK    L  +L +  F   AIHG+  Q  R  +LS F+ G   +
Sbjct: 384 LRSKEPGSKIIIFCSTKKMCDQLSRNLTRN-FGAAAIHGDKSQGERDYVLSQFRAGRSPV 442

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G A+T  + +D KH  
Sbjct: 443 LVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGASGLAYTFFSDQDSKHAL 502

Query: 359 AIEKLIE 365
            + K++E
Sbjct: 503 DLVKVLE 509


>gi|194017071|ref|ZP_03055683.1| ATP-dependent RNA helicase DbpA [Bacillus pumilus ATCC 7061]
 gi|194010939|gb|EDW20509.1| ATP-dependent RNA helicase DbpA [Bacillus pumilus ATCC 7061]
          Length = 480

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 130/339 (38%), Positives = 203/339 (59%), Gaps = 6/339 (1%)

Query: 24  PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRE 83
           PTP+Q +T+ +   R D+   +QTG+GKTA++ LP+  +++    +   P+ LIL PTRE
Sbjct: 27  PTPVQHETLSVAFSRQDLIVKSQTGSGKTAAYGLPICEMVDWAENK---PQALILVPTRE 83

Query: 84  LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           LA QV  +    G+   +  A + G  PF+AQ  +L +   ++  TPGR+LDH  +G L 
Sbjct: 84  LAMQVKQDLTSLGRLKRIKAAAIYGKAPFQAQKVELAQKNHIVCGTPGRVLDHLEKGTLS 143

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           + N++  V+DEAD ML+MGFI  + +I   +P  R ++LFSATM+DE++K+SE FLQ+PK
Sbjct: 144 LENLKFFVLDEADEMLNMGFIEQVSSIIEYLPPKRMSMLFSATMSDEMKKLSEQFLQSPK 203

Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
            IE+    ++   I H  + T  +   K +LLQ+ +  ++   + IIFCN +  V  L  
Sbjct: 204 VIEIAREETSVPQITHTVIET--EEEAKFSLLQRTIVIENP-DSCIIFCNTQDRVNELTM 260

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
            L+        IHG + Q  R  ++  FK G  + ++A+D+AARG+D+ D+ HV ++D+P
Sbjct: 261 KLDDWDVPCDKIHGGMRQEDRFAVMDEFKNGEFRYLIATDIAARGIDVSDMTHVIHYDLP 320

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
              E YIHR GRTGRAG+ GK    + K     ID +++
Sbjct: 321 YEKERYIHRTGRTGRAGKSGKTIAFMTKNAKPLIDELKQ 359


>gi|149376365|ref|ZP_01894128.1| ATP-dependent RNA helicase RhlB [Marinobacter algicola DG893]
 gi|149359379|gb|EDM47840.1| ATP-dependent RNA helicase RhlB [Marinobacter algicola DG893]
          Length = 428

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 151/411 (36%), Positives = 233/411 (56%), Gaps = 14/411 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F DL L  +V+ A+ D G+   TPIQ +T+P  L   D+ G AQTGTGKTA+F++  +  
Sbjct: 13  FKDLNLDQRVLDAITDIGFEHCTPIQAETLPFTLACQDLIGQAQTGTGKTAAFLITAIQS 72

Query: 61  ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              T + K       PR L L PTRELA Q+A + E+        V  ++GG+ ++ Q  
Sbjct: 73  MLETPIPKEDRFASEPRVLALAPTRELAMQIAKDAEQLCGYTGHNVVTVVGGMNYDKQRD 132

Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT-SLVP 175
           +L+    D+L+ TPGR++D      + ++ ++IL++DEADRMLDMGFIP ++ I     P
Sbjct: 133 QLQNEIVDILVATPGRLIDFLGSQDVFLDQLDILILDEADRMLDMGFIPDVKRIIRKCTP 192

Query: 176 -FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTLLFSAT   ++  ++  + ++ + +E+     TAE ++           +K  +
Sbjct: 193 KEERQTLLFSATFNQDVLNLASMWTKSAEFVEIEPEQKTAERVKQTVY--LVGEDEKLPV 250

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L   LQ  +  K  I+F N++    +L   L  QG  V  + G I Q  R+K L  FK G
Sbjct: 251 LVNYLQRPEVEK-AIVFANRRDQCRDLDEDLRNQGVKVALMSGEIAQNKRLKTLEQFKNG 309

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           +IQ++VA+D+A RG+ +  V HVFN+++P+ AE+Y+HRIGRTGRAG+HG + +  +++D 
Sbjct: 310 SIQVLVATDVAGRGIHVDGVTHVFNYNLPDNAEDYVHRIGRTGRAGKHGVSVSFASEDDA 369

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
             + AIE  I +K+     D  +L   LEK  I +    R+  P   +S G
Sbjct: 370 FSLPAIESYISQKLTTAVPD-EALMTELEKPPITRKRGGRR--PQGNRSQG 417


>gi|330962153|gb|EGH62413.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 484

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 97  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 156

Query: 63  LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L +        +  PR LI+ PTREL  Q+A +     K  +L V   +GG+ F+ Q K+
Sbjct: 157 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTDLNVMTFVGGMDFDKQLKQ 216

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 217 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 276

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T+++  +++ +  +P  +E+ + +  ++ +E    A     + K  LL
Sbjct: 277 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 334

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 335 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 393

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 394 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 453

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 454 QLPAIEEKLGRKI 466


>gi|262377334|ref|ZP_06070558.1| II DNA/RNA helicase [Acinetobacter lwoffii SH145]
 gi|262307787|gb|EEY88926.1| II DNA/RNA helicase [Acinetobacter lwoffii SH145]
          Length = 624

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 141/377 (37%), Positives = 222/377 (58%), Gaps = 13/377 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  L   +  A+   G+  PTP+Q + IP  L+  D+   +QTG+GKTA+F+LP L  
Sbjct: 5   FADFSLDESLTQALDALGFTTPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64

Query: 63  LE--------KGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPF 112
           L         K R + V  P  L++ PTRELA QV  +   + ++   + +A ++GG+PF
Sbjct: 65  LANQDTLVPFKDRMKAVTQPNILVISPTRELAQQVCQDAIAFVRHMKGVRIAAIMGGMPF 124

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q ++L +GA V++ TPGR+LD  NR ++ ++ ++ L++DEADRMLD+GF   ++ I  
Sbjct: 125 GKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEADRMLDLGFSEDLEAIGE 183

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L    +QTL+FSAT    +  ++E  + +P RI + T  ST   I      T   +  K 
Sbjct: 184 LAANRKQTLMFSATFAPRIITLAERMMNDPMRISIETGHSTNTDITQTLHWTDG-FEHKK 242

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL   L  +D +   ++F + +++   L   L + G SV A+HG + Q  R + L + +
Sbjct: 243 KLLTHWLNEED-VDQAVVFASTQEDTDMLAEELAEAGLSVVALHGAMPQTVRNRRLRSIR 301

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR GKA TL    
Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGKAITLATYR 361

Query: 353 DIKHIDAIEKLIEKKVD 369
           +   I A+E  ++ +++
Sbjct: 362 ERGKIRALEDFLDARLN 378


>gi|157960228|ref|YP_001500262.1| ATP-dependent RNA helicase RhlB [Shewanella pealeana ATCC 700345]
 gi|189040044|sp|A8GZJ0|RHLB_SHEPA RecName: Full=ATP-dependent RNA helicase rhlB
 gi|157845228|gb|ABV85727.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 436

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 146/402 (36%), Positives = 240/402 (59%), Gaps = 14/402 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FAD  L  +V  A+ +AG+   TPIQ  ++P++L++ D+ G AQTGTGKT +F++     
Sbjct: 11  FADFPLHKEVHQALNEAGFEFCTPIQALSLPILLEKKDIAGQAQTGTGKTLAFLVATFNH 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L+       ++  PR +I+ PTRELA Q+A +     K+  L V ++ GG  +E Q K 
Sbjct: 71  LLSTPIPAERQLNQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGEGYEVQRKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176
           L++G D+LI T GRI+D+  +G + ++ I+ +V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LDKGVDILIGTTGRIIDYVRQGVINVSCIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAK 190

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           +R  +LFSAT++ ++Q+++ + +  P+++E+     T++ I E  F   Y    +K  LL
Sbjct: 191 SRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIF---YPSMEEKMPLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL+ +D  +  I+F N K +   +   LE  G     + G++ Q+ R++IL  F +G 
Sbjct: 248 LSLLE-EDWPEKAIVFSNTKHSCEKVWSWLEGDGHRAGLLTGDVPQKKRLRILEQFTKGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG+ G + +   +E   
Sbjct: 307 IDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEEYAL 366

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHAR 394
           ++ AIE  I+  +   + D  +L    PP  +I      H R
Sbjct: 367 NLPAIESYIQHSIPVTSYDSDALLDDIPPPVRIHRKPSTHTR 408


>gi|332662165|ref|YP_004444953.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332330979|gb|AEE48080.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 451

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 144/385 (37%), Positives = 220/385 (57%), Gaps = 17/385 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F + GL P ++  V    Y   TPIQ K IP++L+  D+ GIAQTGTGKTA+F+LP+L
Sbjct: 1   MNFTEFGLHPDLLDGVDAMNYKTATPIQEKAIPIILEGKDLIGIAQTGTGKTAAFILPVL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQN 116
             I+E G A     +TL++ PTRELA Q+    E Y     ++   + GG     F  + 
Sbjct: 61  NEIIESGEAN--FIQTLVIVPTRELAVQIDQVIEAYSYFTGVSSIAIYGGGDGKEFAQEK 118

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G D++I TPGR++ H N G +  + +  LV+DEADRM+DMGF P +  I   +P 
Sbjct: 119 NALVSGVDIVIATPGRLISHLNMGYVNFSKLRFLVLDEADRMMDMGFQPDLMRIIGKIPQ 178

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSATM + + K++     N + + +   S  AE +       Y +  +K  L+ 
Sbjct: 179 KRQTLLFSATMPESVMKLARQLTHNAESVSIAL-SKPAEGVTQRAYVVYEE--QKLQLVT 235

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL+ +   +  ++FC+ K +V +L   L ++  SV  +  +++Q  R + +  F+   I
Sbjct: 236 ELLKDRKGQRI-VVFCSSKASVSSLYSKLHRKNLSVGQMSSDVEQDQREETMLAFRNSKI 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ +RG+D+  +  V N+DVP   E+Y+HR+GRT RA R G+A TLV+  D   
Sbjct: 295 DIIVATDVISRGIDVDGIDLVVNYDVPRDPEDYVHRVGRTARAERKGEAITLVSPGDQLR 354

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPP 381
              IEKLI+K       D+  L PP
Sbjct: 355 FRRIEKLIDK-------DIEKLGPP 372


>gi|289724644|gb|ADD18300.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
          Length = 652

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 153/408 (37%), Positives = 229/408 (56%), Gaps = 24/408 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            +F + G    V+  +   G+ KPT IQ +  P+ L   D+ G+AQTG+GKT ++VLP +
Sbjct: 118 FEFNEGGFPDYVMTGIKKLGFAKPTAIQAQGWPIALSGRDMVGVAQTGSGKTLAYVLPAV 177

Query: 61  TILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             +   + R+     P  LIL PTRELA Q+     ++G    +    + GG P + Q++
Sbjct: 178 VHINN-QPRLEHSDGPIALILAPTRELAQQIQQVANEFGSQIQVRNTCIFGGAPKQPQSR 236

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LERG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   
Sbjct: 237 DLERGVEIVIATPGRLIDFLERGVTNLRRCTYLVLDEADRMLDMGFEPQIRKIIKQIRPD 296

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVN--TPSSTAETIEHCFVATYAQYSKKC-AL 234
           RQ L++SAT   E++ ++E FL N  +I +   T S+    ++   V   A+ + K   L
Sbjct: 297 RQVLMWSATWPKEVRNLAEEFLDNYIQINIGSLTLSANHNILQIVDVCEEAEKTNKLNKL 356

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L ++   +DT    IIF   KK V  +  S+ +QG+  CAIHG+  Q+ R  +L++F+ G
Sbjct: 357 LGEISSEKDTKT--IIFVETKKRVDEITRSISRQGWRACAIHGDKSQQERDYVLTSFRNG 414

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    + 
Sbjct: 415 RSSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTTANA 474

Query: 355 -KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH----NHARKNN 397
            K  D I+ L E K          +NP L  +D+A H    N  R NN
Sbjct: 475 NKANDLIQVLREAK--------QVINPRL--VDMASHSKRGNGGRSNN 512


>gi|167625797|ref|YP_001676091.1| ATP-dependent RNA helicase RhlB [Shewanella halifaxensis HAW-EB4]
 gi|189040042|sp|B0TJ29|RHLB_SHEHH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|167355819|gb|ABZ78432.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 436

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 146/402 (36%), Positives = 240/402 (59%), Gaps = 14/402 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FAD  L  +V  A+ +AG+   TPIQ  ++P++L++ D+ G AQTGTGKT +F++     
Sbjct: 11  FADFPLHKEVHQALNEAGFEFCTPIQALSLPILLEKKDIAGQAQTGTGKTLAFLVATFNH 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L+       ++  PR +I+ PTRELA Q+A +     K+  L V ++ GG  +E Q K 
Sbjct: 71  LLSTPIPAERQLNQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGEGYEVQRKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176
           L++G D+LI T GRI+D+  +G + ++ I+ +V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LDKGVDILIGTTGRIIDYVRQGVINVSCIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAK 190

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           +R  +LFSAT++ ++Q+++ + +  P+++E+     T++ I E  F   Y    +K  LL
Sbjct: 191 SRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIF---YPSMEEKMPLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL+ +D  +  I+F N K +   +   LE  G     + G++ Q+ R++IL  F +G 
Sbjct: 248 LSLLE-EDWPEKAIVFSNTKHSCEKVWSWLEGDGHRAGLLTGDVPQKKRLRILEQFTKGE 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG+ G + +   +E   
Sbjct: 307 IDILVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISVSFACEEYAL 366

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHAR 394
           ++ AIE  I+  +   + D  +L    PP  +I      H R
Sbjct: 367 NLPAIESYIQHSIPVTSYDSDALLDDIPPPVRIHRKPSTHTR 408


>gi|255961279|ref|YP_346703.3| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens Pf0-1]
 gi|77381201|gb|ABA72714.1| ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 492

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 140/373 (37%), Positives = 221/373 (59%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  L+P+++ A+ D G+   TPIQ + +   L   D  G AQTGTGKTA+F++ ++T 
Sbjct: 104 FHDFKLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLISIITQ 163

Query: 62  ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L+    + R    PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K 
Sbjct: 164 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKH 223

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           LE R  D+L+ TPGR+LD   RG + ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 224 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 283

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT TD++  +++ +  +P  +E+   +   E +E    A     + K  LL
Sbjct: 284 SERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEVTNVANENVEQHIYAVAG--ADKYKLL 341

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ + +  +  I+F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 342 FNLV-NDNGWERVIVFANRKDEVRRIEERLVRDGINAAQLSGDVPQHKRIKTLEGFREGK 400

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 401 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 460

Query: 356 HIDAIEKLIEKKV 368
            + +IE+ + +K+
Sbjct: 461 QLPSIEEKLGRKI 473


>gi|28899776|ref|NP_799381.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153839108|ref|ZP_01991775.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AQ3810]
 gi|260362509|ref|ZP_05775435.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus K5030]
 gi|260877189|ref|ZP_05889544.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AN-5034]
 gi|260897233|ref|ZP_05905729.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus Peru-466]
 gi|260901365|ref|ZP_05909760.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AQ4037]
 gi|32363280|sp|Q87KH5|RHLB_VIBPA RecName: Full=ATP-dependent RNA helicase rhlB
 gi|28808028|dbj|BAC61265.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149747404|gb|EDM58368.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AQ3810]
 gi|308088928|gb|EFO38623.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus Peru-466]
 gi|308094139|gb|EFO43834.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AN-5034]
 gi|308107202|gb|EFO44742.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AQ4037]
 gi|308112656|gb|EFO50196.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus K5030]
 gi|328471326|gb|EGF42225.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus 10329]
          Length = 437

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 146/382 (38%), Positives = 220/382 (57%), Gaps = 9/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FADLGL P+V   +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADLGLQPQVTEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT  E    +   PR +I+ PTRELA Q+ ++ E    +  L  AL  GG  ++ Q  K
Sbjct: 71  LLTTPEHEGRQPTQPRAIIMAPTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLAK 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+LI T GRI+D + +    +NNI+ +V+DEADRM D+GFI  I+ +   +P  +
Sbjct: 131 LQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + L  LFSAT++  +Q+++   + NP+ + V     T   I+      Y     K ALLQ
Sbjct: 191 ERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPAQKTGHRIQEELF--YPSNEDKMALLQ 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ ++     I+F N K    ++   L   G  V  + G++ Q+ R KIL  F +G +
Sbjct: 249 TLIE-EEWPDRAIVFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDV 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   +
Sbjct: 308 DILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAIN 367

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
           + AIE+ IE  +     D S+L
Sbjct: 368 LPAIEEYIEHTIPVSEYDASAL 389


>gi|167375363|ref|XP_001733609.1| ATP-dependent rRNA helicase RRP3 [Entamoeba dispar SAW760]
 gi|165905196|gb|EDR30262.1| ATP-dependent rRNA helicase RRP3, putative [Entamoeba dispar
           SAW760]
          Length = 432

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 150/374 (40%), Positives = 224/374 (59%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL P+V+  V   GY KPT IQ  +IP+ LQ+ D+ GIAQTG+GKTASF+LPM+  
Sbjct: 11  FKDLGLIPEVLKVVEYLGYKKPTKIQENSIPVALQKKDIIGIAQTGSGKTASFLLPMIQH 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L   + + R    +I+EPTRELAAQV +  ++ GK    L   LL+GG+    Q+ +L +
Sbjct: 71  LLNVKEKNRAFYCIIIEPTRELAAQVVEVLDEIGKALPGLMSCLLVGGMDVMKQSIQLAK 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIE---ILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              V++ TPGRI+ H    K +  +I+    LVIDEAD++L+M F   I  +   +P  R
Sbjct: 131 RPHVIVGTPGRIVYHIKNTKGVEESIQKVKFLVIDEADKLLEMDFANEIDYLIEKLPSQR 190

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRI-EVNTPSSTAETI--EHCFVATYAQYSKKCALL 235
            T+LFSATM+ +++K+    L +P +I E      T +T+  E+CF+     +  +   L
Sbjct: 191 TTMLFSATMSTKVEKLQRASLTHPVKIKEEEQKYQTVDTLRQEYCFIP----FKYRDGYL 246

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +L+  +  K+ IIF  +      L   L + G++   +HG + Q+ R+  L  FK G 
Sbjct: 247 LSILKETEG-KSIIIFTMKCSGCTKLVMMLRQLGYAAIPLHGKMSQQKRLIALEKFKSGK 305

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+D+A+RGLDIP+V  V N+D P   ++YIHR+GRT RAG+ G A TLV +  I+
Sbjct: 306 RGILVATDVASRGLDIPNVDIVINYDCPLEPKDYIHRVGRTARAGKSGYAITLVTQYSIE 365

Query: 356 HIDAIEKLIEKKVD 369
               IE +IEKK++
Sbjct: 366 LYQRIETMIEKKLN 379


>gi|226494636|ref|NP_001147596.1| pre-mRNA-processing ATP-dependent RNA helicase prp-5 [Zea mays]
 gi|195612416|gb|ACG28038.1| pre-mRNA-processing ATP-dependent RNA helicase prp-5 [Zea mays]
          Length = 768

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 143/357 (40%), Positives = 215/357 (60%), Gaps = 4/357 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D G    ++ A+    Y KPT IQ + +P+VL   D+ GIA+TG+GKTA+FVLPM+ 
Sbjct: 220 NFEDCGFPVPLMNAIAKQAYQKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIV 279

Query: 62  -ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            I+++    +   P  +I  PTRELA Q+    +K+ K YNL VA + GG+    Q K+L
Sbjct: 280 HIMDQPELEKEEGPIGVICAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKEL 339

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G +V+I TPGR++D      L M     LV+DEADRM D+GF P I++I   +   RQ
Sbjct: 340 KAGCEVVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPGRQ 399

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  ++++++   L +P R+ V       E I+       +   K   LL++L 
Sbjct: 400 TLLFSATMPYKVERLAREILTDPIRVTVGQVGGANEDIKQVVNVIPSDAEKMPWLLEKLP 459

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D   + ++F ++K  V  +   L ++GF + A+HG+ DQ SRM+ L  FK GT  ++
Sbjct: 460 GMIDD-GDVLVFASKKARVDEIERELNQRGFRIAALHGDKDQASRMETLQKFKSGTYHVL 518

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIK 355
           VA+D+AARGLDI  +  V NFD+    + +IHRIGRTGRAG + G A+TL+ +++ +
Sbjct: 519 VATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEAR 575


>gi|114561845|ref|YP_749358.1| ATP-dependent RNA helicase SrmB [Shewanella frigidimarina NCIMB
           400]
 gi|114333138|gb|ABI70520.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 406

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 137/367 (37%), Positives = 215/367 (58%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P ++ ++   G+  PT IQ +TIPL + + D+   A TGTGKTASF+LP L
Sbjct: 1   MQFEDFQLDPSLLESLKAMGHNTPTTIQQQTIPLAMDQRDILARAPTGTGKTASFLLPAL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +++  R      R L+L PTRELA+Q+            L +A++ GG+P+  Q + L
Sbjct: 61  QHLIDFPRRFEGQARILVLTPTRELASQIHRYASHLATGLELNIAIITGGVPYGPQEEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+LI TPGR++++ ++ K     +EIL+IDEADRMLDMGF   +Q+I       +Q
Sbjct: 121 ADNVDLLIATPGRLMEYLDKDKFDATEVEILIIDEADRMLDMGFSSVVQSIAIEAQGRKQ 180

Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            +LFSAT+  + + + + + L +P  ++V  P S    + H +V      + K ALL  +
Sbjct: 181 NMLFSATLEGNGVNRFARDLLTDPVMVDVEAPRSEKAKV-HQWVHLADDQAHKFALLCHI 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ Q+ +   I+F   ++ V +L   L K       + G+++Q+ R + L  F +G + +
Sbjct: 240 LQ-QENVTRTIVFVKTREMVASLEGLLLKANIPCAFMRGDMEQKKRFQALGRFSKGEVNV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+ D+ HV NFD+P  A+ Y+HRIGRT RAG  G A +LV   D++ + 
Sbjct: 299 LLATDVAARGIDVDDITHVINFDMPRSADAYVHRIGRTARAGAKGTAISLVEAHDMRIVS 358

Query: 359 AIEKLIE 365
            IE+ IE
Sbjct: 359 KIERYIE 365


>gi|227486921|ref|ZP_03917237.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227092995|gb|EEI28307.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 455

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 133/357 (37%), Positives = 211/357 (59%), Gaps = 8/357 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +LG++ ++  A+     V    IQ  T+P+ L+  D+ G A+TG GKT  F +P+L  
Sbjct: 10  FTELGVAQEITDALAAQSIVDTFAIQALTLPIALEGRDLIGQARTGMGKTLGFGVPVLDR 69

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           I +          PR LI+ PTREL  QV ++  +   N  + V  + GG P+E Q K L
Sbjct: 70  IFDDADIEELDGTPRALIVVPTRELCVQVGEDLTRAAVNLPVRVTTIYGGTPYEEQEKAL 129

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D+++ TPGR++D +NRG+L +  + ILV+DEAD MLD+GF+P I+ I + +    Q
Sbjct: 130 KDGTDLVVGTPGRLIDLYNRGELRLGTVRILVLDEADEMLDLGFLPAIEKIIAGITAEHQ 189

Query: 180 TLLFSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           T+LFSATM D +  ++  F+  P   R E++  + T  T +     ++     K A++ +
Sbjct: 190 TMLFSATMPDAILGLARGFMNKPVHIRAEMSGEAETNATTKQVVFKSHRM--DKVAVISR 247

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +LQ++   +  IIF   K++   +   L   GF V ++HG++ Q +R + L  F++G + 
Sbjct: 248 VLQARGRGRT-IIFVRTKRSAAEVARDLAGAGFQVASVHGDMSQSARERSLQGFRDGVVD 306

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           ++VA+D+AARG+DI DV HV N+  P+    Y+HRIGRTGRAG  G A TLV  +++
Sbjct: 307 ILVATDVAARGIDIDDVTHVINYQTPDDELTYVHRIGRTGRAGHTGTAVTLVGYDEL 363


>gi|157961286|ref|YP_001501320.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157846286|gb|ABV86785.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 442

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 219/371 (59%), Gaps = 14/371 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGL P+++  +    Y KPT IQ   IP VL   DV G A+TG+GKTA+F LP++ 
Sbjct: 24  DFTQLGLIPELLETLKLLSYTKPTAIQSHIIPAVLDGKDVLGGAKTGSGKTAAFALPIIQ 83

Query: 62  ILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQN 116
            L K   R         L+L PTRELA QVAD+F +Y +    NL    + GG+    Q 
Sbjct: 84  KLAKASPRKAGGNFVSCLVLVPTRELAQQVADSFMRYSQLIKPNLKTLAVYGGVSTNVQM 143

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  GAD+++ TPGR++D  +   L ++N   LV+DEADRML +GF   +  + + +P 
Sbjct: 144 QSLRGGADIVVATPGRLIDLISSNALKLDNTTTLVLDEADRMLSLGFTEELNELLAKLPK 203

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T+QTLLFSAT  +E+++++++ L NP  +EV   SS   T+    +      ++K ALL 
Sbjct: 204 TKQTLLFSATFPEEVRELTDSLLNNP--VEVQLQSSEESTLVQRVITV--NRNRKTALLA 259

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           QL++  +  +  +IF + K +   L   LE  G +    H +  Q +R ++L  FK G I
Sbjct: 260 QLIKD-NQWQQVLIFASAKYSCNRLAQKLENAGITAEVFHSDKGQGARNRVLEEFKSGEI 318

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARG+DI  +  V NF++P    +Y+HRIGR+GRAG  G A +L++ ++ +H
Sbjct: 319 SVLIATDIAARGIDIEKLPIVINFELPRSPVDYMHRIGRSGRAGEAGLAMSLISHDEYQH 378

Query: 357 IDAIEKLIEKK 367
                KLIEKK
Sbjct: 379 F----KLIEKK 385


>gi|209545470|ref|YP_002277699.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533147|gb|ACI53084.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 390

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 141/352 (40%), Positives = 202/352 (57%), Gaps = 9/352 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F  LGL P++V  V  AGY  P+PIQ   IP +    DV  +A+TGTGKTA+F LP++  
Sbjct: 16  FDTLGLDPRIVANVARAGYATPSPIQALAIPPIRDGRDVEALARTGTGKTAAFALPVIHR 75

Query: 61  TILEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +   G A    P    R LIL PTRELA+Q A       +   LTVAL IGG P + Q 
Sbjct: 76  LLTGAGGAAPSGPPGAVRALILSPTRELASQTAGTVRTCIRGCGLTVALAIGGAPKDRQA 135

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  G D+L+ TPGR+LDH     + +++   LV+DEADRMLD+GF+  ++ I + +P 
Sbjct: 136 RALLDGVDILVATPGRLLDHLADATITLDHTTCLVLDEADRMLDLGFVEDVRAIAARLPV 195

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             QTLLFSATM+  +  +    L  P +I     ++    I    + T A  ++K A L 
Sbjct: 196 RHQTLLFSATMSPAISALGRQLLHKPLQIAPPEQAAPPPRIRQQVIFTPA--ARKAASLL 253

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +L+ +   +  ++F   K+    L  +L   G +  A+HG+  Q  R + L +F+ G +
Sbjct: 254 AVLRREAGGRT-MVFTRTKQAADALARTLNTGGVTAAALHGDHGQVRRDRTLDDFRRGRL 312

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            ++VA+D+ ARG+D+ DV  V NFD+P + E YIHRIGRT RAGR G A +L
Sbjct: 313 LVLVATDVMARGIDVEDVALVVNFDIPEQPETYIHRIGRTARAGRRGTALSL 364


>gi|325527064|gb|EGD04490.1| ATP-dependent RNA helicase [Burkholderia sp. TJI49]
          Length = 391

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 134/292 (45%), Positives = 191/292 (65%), Gaps = 3/292 (1%)

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           L PTRELA QVA N   Y K+ +L  A++ GG+    Q  +L RG ++LI TPGR+LDH 
Sbjct: 1   LTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHV 60

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
            +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P  RQTLLFSAT + E++K++  
Sbjct: 61  QQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATFSPEIKKLAST 120

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
           +L+NP+ IEV   +ST   +    V   A+  K+ A++ QLL+ +  +K  I+FCN K  
Sbjct: 121 YLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKQAAVV-QLLRDRG-LKQVIVFCNSKIG 177

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
              L  +LE+ G    AIHG+  Q  RM+ L  FK G I+ +VA+D+AARGLDI ++  V
Sbjct: 178 ASRLARNLERDGVVASAIHGDKSQIERMQALDAFKRGEIEALVATDVAARGLDIAELPAV 237

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
            NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K +  IEKLI++ ++
Sbjct: 238 INFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLIKRPLE 289


>gi|294776591|ref|ZP_06742061.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
 gi|294449579|gb|EFG18109.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
          Length = 425

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 149/423 (35%), Positives = 243/423 (57%), Gaps = 19/423 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L   V+ A+    + + TP+Q  TIP++L+  D+ G+AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELNLEEGVLQALDAMRFEECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL---TVALLIG--GIPFEAQ 115
             L KG         +I+ PTRELA Q+    E  G +Y L   +VA+  G  G+ FE +
Sbjct: 61  NQLSKGGYPEDAINCVIMSPTRELAQQIDQQME--GFSYFLPASSVAVYGGNDGVRFEQE 118

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P
Sbjct: 119 KKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYLP 178

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT++FSATM  ++Q++++  L NP  I++       + I+  ++    Q   K  ++
Sbjct: 179 KERQTIMFSATMPAKIQQLAKTILNNPVEIKLAVSKPAEKIIQTAYICYERQ---KLGII 235

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L Q Q T +  IIF + K  V  +  + ++   +V  +H +++Q  R +I+  FK G 
Sbjct: 236 QSLFQDQ-TPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGR 294

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I +++A+D+ +RG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V++++  
Sbjct: 295 INILIATDIVSRGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANHDGCAITFVSEKEQP 354

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
              AIE       ++L  ++  +  P E  +  ++N          K +G  R++ NY  
Sbjct: 355 QFKAIE-------NFLGRNIYKIPVPEELGEAPEYNPRSGAGRSNHKGSG-SRKQGNYKG 406

Query: 416 QKS 418
           +K+
Sbjct: 407 KKN 409


>gi|123966425|ref|YP_001011506.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9515]
 gi|123200791|gb|ABM72399.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9515]
          Length = 595

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 147/403 (36%), Positives = 225/403 (55%), Gaps = 16/403 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G +  ++ ++ + GY  PTPIQ   IP ++   D+ G AQTGTGKTA+F LP++  
Sbjct: 53  FACFGFNKLILNSLENKGYKIPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPIIEK 112

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121
           LE  +      + L++ PTRELA QVAD+F+ Y  ++ NL    + GG  F  Q   L+R
Sbjct: 113 LENNKES--NAKVLVMTPTRELATQVADSFKSYSVESTNLRTLAIYGGTDFRNQISSLKR 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DV++ TPGRI+DH  +G   +NNI  LV+DEAD ML MGF+  I+ I   +P  +Q +
Sbjct: 171 KTDVVVGTPGRIMDHIRQGTFKINNINCLVLDEADEMLKMGFLEDIEWIIDKLPENKQMV 230

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +E++ +++ +L +P  I + +     + I   ++    Q   K   L+++L+ 
Sbjct: 231 LFSATMPNEIRNIAKKYLNDPAEILIKSVKKETQLITQRYIN--VQRHHKLEALKRILEI 288

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T +  IIF   K    ++  +LE  G SV  ++G+I Q  R   +   K+G I ++VA
Sbjct: 289 --TNEGVIIFVRTKLLTTSIAEALENSGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVA 346

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D P   E Y HRIGRTGRAGR G+A   V + +   +  +E
Sbjct: 347 TDVAARGLDVERIKLVINYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLE 406

Query: 362 KLIEKKVDWL---------NGDLSSLNPPLEKIDIAQHNHARK 395
                K++ +            +  L   L +I +AQ N+  K
Sbjct: 407 NSTRNKIEEIEIPNNKLINEKRMGKLISNLNEISLAQENNEEK 449


>gi|95930488|ref|ZP_01313224.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
 gi|95133528|gb|EAT15191.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
          Length = 433

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 137/371 (36%), Positives = 216/371 (58%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L   V   V+  G+ + TP+Q + IPL L   D+   AQTGTGKTA+F++ + 
Sbjct: 1   MRFDTLNLPELVQQGVVQLGFSELTPVQEQAIPLALNGRDIAAQAQTGTGKTAAFLIALY 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           T +L   +     PR LI+ PTREL  Q+ ++ +    +  LT+  + GG+ ++ Q +  
Sbjct: 61  TRLLNNPQPTSENPRALIMAPTRELVVQICEDAKGLVPDSPLTIHPVYGGVDYDRQRQAF 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177
            +G D+++ TPGR++D+  +       IE+LVIDEADRM DMGFI  ++ I   +P    
Sbjct: 121 GKGVDIVVATPGRLIDYAKQKVFSFKRIEVLVIDEADRMFDMGFISDLRFILRRLPSYDK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT++  + +++ +F+   +++++     TAE +E       A+  +K  LL  
Sbjct: 181 RQTMLFSATLSPRVMELAYDFMNEAEKVQIEPEQVTAERVEQIVYHVGAK--EKIPLLLG 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL  +      ++F N K++   +   L+        I G+I Q  RM+ILS FKEG +Q
Sbjct: 239 LLNGRMADGRVMVFANTKRDTDYVTRVLQANDVKAAQISGDISQVKRMRILSEFKEGKVQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A+RG+ I DV HV N+DVP   E+Y+HRIGRT RAG  G A  +  ++ + H+
Sbjct: 299 VLVATDVASRGIHIEDVTHVVNYDVPQDPEDYVHRIGRTARAGASGLAIMMADEDLVYHL 358

Query: 358 DAIEKLIEKKV 368
            AIE+ I   +
Sbjct: 359 PAIEEYISSSI 369


>gi|91227047|ref|ZP_01261584.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
 gi|91188849|gb|EAS75135.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
          Length = 416

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 148/370 (40%), Positives = 219/370 (59%), Gaps = 19/370 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL P +V  +    Y +PTPIQ ++IP +L+  D+ G A TG+GKTA+F LP+L  
Sbjct: 10  FADLGLIPTLVERLEALEYSQPTPIQSRSIPDILEGKDIIGGANTGSGKTAAFSLPILQK 69

Query: 63  L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-----TVALLIGGIPFE 113
           +    E    R      LIL PTRELA+QVA N + Y  +Y+L     TVA+  GG+   
Sbjct: 70  IVQQDESNNRRGNFVSHLILVPTRELASQVAYNVKSY--SYHLRDKIKTVAVF-GGVSVN 126

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  G D+++ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  I +L
Sbjct: 127 PQMLALRGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILAL 186

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKC 232
           +P  +QTLLFSAT  D++  +++  L++P  +EV   S+ A T ++  F     +   K 
Sbjct: 187 LPEKKQTLLFSATFPDKVTTLAQQLLRDP--VEVQLQSAEASTLVQRVFSVNKGE---KT 241

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           A+L  L++ Q   +  +IF N K    +L   L K+G +    HG+  Q +R ++L  FK
Sbjct: 242 AVLAHLIK-QHQWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFK 300

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G IQ+++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G   +L+  +
Sbjct: 301 SGEIQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYD 360

Query: 353 DIKHIDAIEK 362
           D  H   IEK
Sbjct: 361 DYHHFKVIEK 370


>gi|224135589|ref|XP_002322111.1| predicted protein [Populus trichocarpa]
 gi|222869107|gb|EEF06238.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 137/369 (37%), Positives = 206/369 (55%), Gaps = 25/369 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A+  LS +++ AV    Y KP+PIQ+  IPL LQ+ DV GIA+TG+GKT +FVLPMLT 
Sbjct: 292 WAESKLSSELLKAVERVVYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTCAFVLPMLTY 351

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + +            P  +++ PTRELA Q+ D   K+     + V  ++GG   E Q  
Sbjct: 352 ISRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGF 411

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           ++ +G +V+I TPGR++D   R   ++N    +V+DEADRM+DMGF P +  +   +P +
Sbjct: 412 RIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSS 471

Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
                            R T +FSATM   +++++  +L+NP  + + T     + I   
Sbjct: 472 NLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQH 531

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
            + T  + S+K + L +LL      K  I+F N KKN   +  +L+K G+ V  +HG   
Sbjct: 532 VIMT--KESEKSSRLHRLLDELGD-KTAIVFVNTKKNADMVAKNLDKHGYRVTTLHGGKS 588

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q  R   L  F+     ++VA+D+A RG+DIPDV HV N+D+P   E Y HRIGRTGRAG
Sbjct: 589 QEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAG 648

Query: 341 RHGKAFTLV 349
           + G A T +
Sbjct: 649 KTGVASTFL 657


>gi|121727419|ref|ZP_01680547.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V52]
 gi|147673597|ref|YP_001218057.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O395]
 gi|262167586|ref|ZP_06035291.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC27]
 gi|262190509|ref|ZP_06048754.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae CT 5369-93]
 gi|121630191|gb|EAX62591.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V52]
 gi|146315480|gb|ABQ20019.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O395]
 gi|227014452|gb|ACP10662.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O395]
 gi|262024039|gb|EEY42735.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC27]
 gi|262033605|gb|EEY52098.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae CT 5369-93]
          Length = 460

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 142/368 (38%), Positives = 225/368 (61%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P+++  +   G+   TPIQ +++P +L+  DV G  +TG+GKTA+F L +L+ 
Sbjct: 6   FAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+    L+L PTRELA QVA +    G+  +N+ V  L GG+P   Q   LE 
Sbjct: 66  LNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH ++ ++ ++ +  LV+DEADRML+MGF   ++ I +  P  RQTL
Sbjct: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++++  +N   I+V     T+ +I   F       ++  AL   LL  
Sbjct: 183 LFSATYPTSIEQIAQSVTRNALMIKVEATHDTS-SIRQYFYKVEGSAARDEALETLLLHH 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q T  + ++FCN K+ V N+  +L + GFSV  +HG+++QR R + L  F   +I ++VA
Sbjct: 242 QPT--SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFN+D+    E ++HRIGRTGRAG  G AF+  +  +   +  I+
Sbjct: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359

Query: 362 KLIEKKVD 369
           + ++  ++
Sbjct: 360 EYMDIAIE 367


>gi|50084496|ref|YP_046006.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. ADP1]
 gi|49530472|emb|CAG68184.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter sp. ADP1]
          Length = 383

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 143/374 (38%), Positives = 222/374 (59%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++  A+   G+ + TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 5   FGTLNLHPQLKQAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     ++ R R  + R LIL PTRELA Q+  +  +  +  +L V  L+GG+ F+ Q K
Sbjct: 65  LLNNPIQEQRYRGEV-RALILAPTRELALQIESDARELTRFTDLNVLTLVGGVDFDKQKK 123

Query: 118 KL-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            L E+  D+L+ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P 
Sbjct: 124 PLNEKFIDILVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPR 183

Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTL+FSAT + ++  ++  +L  P  +E+     T   +E        Q   K  L
Sbjct: 184 KEQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYMVAKQ--DKYRL 241

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ +L+ +  +   +IF N++  V  L   L+K G+ V  + G I Q  R+K+L  FK+G
Sbjct: 242 LQDILRDE-PIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQG 300

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +M+A+D+A RG+ +  V HV NF +P ++++Y+HRIGRTGRAG  G + + ++++D 
Sbjct: 301 KNNIMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGTQGVSISFLSEDDA 360

Query: 355 KHIDAIEKLIEKKV 368
            ++  IEK I KK+
Sbjct: 361 FYLPEIEKAIGKKL 374


>gi|332520832|ref|ZP_08397292.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332043362|gb|EGI79558.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 622

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 221/369 (59%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61
           F +LGL+  ++  + D G+  P+ +Q K IP++LQ   D+  +AQTGTGKTA+F  PML 
Sbjct: 4   FQELGLNEDLLKGITDLGFETPSEVQEKAIPILLQDEGDLVALAQTGTGKTAAFGFPMLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            ++      R  + LIL PTREL  Q+A+  + YGK    L V  + GG     Q ++++
Sbjct: 64  KID---VNSRTTQGLILSPTRELCLQIANEMKAYGKYCKGLNVVAIYGGSSITDQAREVK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +++ TPGR+ D  +R  + +  I+  V+DEAD ML+MGF   I +I S  P  + T
Sbjct: 121 RGAQIIVATPGRMKDMISRKLVDITKIQYSVLDEADEMLNMGFKEDITDILSGTPKDKST 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+ +++++F+  P+ I V   + +   + H +    A+   +   L++L  
Sbjct: 181 WLFSATMPKEVARIAKDFMHEPQEITVGHKNESTSNVSHEYYLVNAR--DRYQALKRLAD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   + + +IFC  K++   +   L + G+S  A+HG++ Q  R  ++  F+   IQ++V
Sbjct: 239 ANPDIFS-VIFCRTKRDTQKVAEQLIEDGYSAGALHGDLSQNQRDIVMKQFRTRQIQMLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV HV N+ + +  E Y HR GRTGRAG+ G +  +V+K +++ + +I
Sbjct: 298 ATDVAARGIDVDDVTHVINYQLSDEIETYTHRSGRTGRAGKTGVSMVIVSKSEVRRLRSI 357

Query: 361 EKLIEKKVD 369
           E++I KK +
Sbjct: 358 ERIINKKFE 366


>gi|6137207|gb|AAF04377.1|AF188678_1 P72 DEAD box protein [Pisum sativum]
          Length = 716

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 141/374 (37%), Positives = 211/374 (56%), Gaps = 18/374 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA  G   ++   V +AG+  PTPIQ ++ P+ LQ  D+  IA+TG+GKT  ++LP  
Sbjct: 152 MSFASSGFPSEIHKEVQNAGFSAPTPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLLPAF 211

Query: 60  -----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                L I  K       P  L+L    ELA Q+ D   K+ K   +    L GG P   
Sbjct: 212 ITSSALIITPK-----WGPTILVLHQQGELATQIQDEAVKFSKTSRIACTCLYGGAPKGP 266

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + ++RGAD+++ TPGR+ D     ++ ++ +  LV+DEADRMLDMGF P I+ I + V
Sbjct: 267 QLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNGV 326

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS---STAETIEHCFVATYAQYSKK 231
           P  RQTL+F+AT   E++K++ + L NP ++ +       +     +H  V  + +  ++
Sbjct: 327 PARRQTLMFTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHIEVLAHMEKQRR 386

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L+ +LQSQD     IIFC+ KK    L  +L +Q F   AI G+  Q  R  +L+ F
Sbjct: 387 ---LESILQSQDQGSKIIIFCSTKKMCDQLARNLTRQ-FGAAAIRGDKSQADRDHVLNQF 442

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G   ++VA+D+AARGLD+ D+  V N+  P   E+Y+HRIGRTGRAG  G A+T    
Sbjct: 443 RSGRTPVLVATDVAARGLDVKDIRVVVNYTFPTGVEDYLHRIGRTGRAGATGIAYTFFGD 502

Query: 352 EDIKHIDAIEKLIE 365
           +D KH   + K++E
Sbjct: 503 QDAKHASDLIKILE 516


>gi|264680431|ref|YP_003280341.1| hypothetical protein CtCNB1_4299 [Comamonas testosteroni CNB-2]
 gi|262210947|gb|ACY35045.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 469

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 149/390 (38%), Positives = 219/390 (56%), Gaps = 16/390 (4%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           L LSP+++  +   GY + TPIQ  ++PL LQ  D+   A TG+GKTA+F LPM+  L  
Sbjct: 19  LPLSPEMLANLQQLGYAQMTPIQAASLPLTLQGKDLIAQASTGSGKTAAFGLPMVDRLNP 78

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGAD 124
              R    + L+L PTRELA QVA    +  +   N+ V  + GG+P   Q   LE GA 
Sbjct: 79  ---RWFAVQALVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRNQIASLENGAH 135

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGR++D   RGKL + N++ LV+DEADRMLDMGF+  I+ +    P  RQTLLFS
Sbjct: 136 IVVGTPGRVMDLMERGKLDIGNLKTLVLDEADRMLDMGFLGDIETVVRQCPADRQTLLFS 195

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLLQSQD 243
           AT  D +  ++  F+++P+ ++V T  S  +  +  + V T  + S    LL        
Sbjct: 196 ATYPDGIASLASRFMRDPQTVKVATQHSAGKIAQRWYEVGTREKVSTVAKLLAHFRP--- 252

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             ++ I FCN K+   ++   L+ QGFS  A+ G ++QR R ++L  F   +  ++VA+D
Sbjct: 253 --ESSIAFCNTKQQCRDVVSELQAQGFSALALFGELEQRERDEVLVQFANKSCSVLVATD 310

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARGLDI D+  V N DV    E +IHRIGRTGR    G A  LV+ +++  +  IE+L
Sbjct: 311 VAARGLDIADLSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLVSMDEMGSVGKIEQL 370

Query: 364 IEKKVDWLNGDL------SSLNPPLEKIDI 387
             +   +   D         L PP+  I I
Sbjct: 371 QGRASQFFPVDELTPAAGGELLPPMMTIQI 400


>gi|319651055|ref|ZP_08005189.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
 gi|317397225|gb|EFV77929.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
          Length = 481

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 133/362 (36%), Positives = 218/362 (60%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  +S ++  A+    Y  PT +Q + IPL ++  D+   AQTG+GKTASF +P+  +
Sbjct: 6   FADFHVSEEIKRALAVLKYETPTEVQSEVIPLAMKNQDLVVKAQTGSGKTASFGIPVSDM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ +IL PTRELA QV ++    G+   +    + G  PF  Q  +L++ 
Sbjct: 66  VEWEEKK---PQAIILTPTRELAVQVREDITNIGRFKRIKAVAVYGKEPFSKQKDELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR++DH  R  L+++ I+ L+IDEAD ML+ GFI  ++ I   +P  R T++
Sbjct: 123 THVVVGTPGRVMDHIERETLILDQIKYLIIDEADEMLNRGFIDEVEAIIKELPSNRVTMV 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +++ +   ++++P +I++ +   TA+TIEH  +    +  +K +LL+ +   +
Sbjct: 183 FSATLPKDVENLCHKYMKDPIQIKIESTKVTADTIEHSLIEVREE--EKISLLKDVTVVE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + +IFC  K++V  +   L+K G+    +HG ++Q  R  ++  FK G  + +VA+
Sbjct: 241 NP-DSCLIFCRTKEHVDTVYSELDKAGYPCERLHGGLEQEDRFSVMEGFKLGNFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI +V  V N+DVP   E+Y+HR GRTGRAG  GKA T     + K I AIE+
Sbjct: 300 DVAARGIDIDNVTLVINYDVPMEKESYVHRTGRTGRAGNKGKAITFSTPFEGKFIKAIER 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|300024067|ref|YP_003756678.1| DEAD/DEAH box helicase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525888|gb|ADJ24357.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 635

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 224/373 (60%), Gaps = 7/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F   G +  +  A+   GYV PTPIQ++ +P  L+  D+ G+A+TG+GKTA+FVLP+L 
Sbjct: 5   NFEAFGFAEPLSRALTQCGYVTPTPIQVQALPPQLEGRDLLGMAETGSGKTATFVLPLLQ 64

Query: 62  ILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +    +    P+    L+L PTRELA Q+        +N  +  A+++GG+    Q   
Sbjct: 65  KIASQNSEP-APKQVLALVLAPTRELAIQIDQEVASLARNMRIRRAVVLGGVSKGPQINA 123

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RG  VL+ TPGR+LD  N     ++ +E LV+DEADRM DMGFI  I+ I +++P  R
Sbjct: 124 LKRGVHVLVATPGRLLDLINMRTCDLSRVETLVLDEADRMFDMGFIRDIKKIVAMLPEAR 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +T LFSATM  E++K + + L+ P R+++++ S   + I+   +    + ++K + L  +
Sbjct: 184 RTALFSATMPVEIKKFAYDILKEPYRVDLSSKSVVVDRIDQKVM--IVRTTEKQSRLHTI 241

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L + +  K  I+F   K+    +   L   G S  A HGN  Q +R + L++F  G I++
Sbjct: 242 L-ADEACKRVIVFTRTKRGADRVAERLGMAGISASAFHGNKAQNARQRALNDFMMGHIRV 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ ++ HV NFD+P   E Y+HR+GRT R G  G A +L    + + I 
Sbjct: 301 LVATDIAARGIDVSNITHVVNFDMPLDPETYVHRVGRTARKGNSGIAISLCDPGERQEIT 360

Query: 359 AIEKLIEKKVDWL 371
           AIE+++++K++ +
Sbjct: 361 AIERMMKQKLEVI 373


>gi|50286247|ref|XP_445552.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661437|sp|Q6FW42|DRS1_CANGA RecName: Full=ATP-dependent RNA helicase DRS1
 gi|49524857|emb|CAG58463.1| unnamed protein product [Candida glabrata]
          Length = 725

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 149/385 (38%), Positives = 222/385 (57%), Gaps = 17/385 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL LS  V+  + + GYVKP+PIQ  TIP+ L   D+   A TG+GKTA+F++P++  
Sbjct: 208 FNDLALSRPVMKGLSNLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 267

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L    A+V   R ++L PTRELA QVAD  +K G+   NLT  L +GG+    Q + L+ 
Sbjct: 268 LLYKPAKVASTRVIVLTPTRELAIQVADVGKKIGQFVSNLTFGLAVGGLNLRQQEQMLKT 327

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR +DH  N     ++++E+LVIDEADRML+ GF   +  I SL+P  RQT
Sbjct: 328 RPDIVIATPGRFIDHIRNSASFNVDSVEVLVIDEADRMLEDGFQDELNEIMSLLPSKRQT 387

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++    L+ P RI ++ P   A  +   FV    +   K +LL  L++
Sbjct: 388 LLFSATMNSRIKQLISLSLKRPVRIMIDPPKQAATKLTQEFVRIRKRDHLKPSLLFNLIR 447

Query: 241 SQD--TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             D    K  ++F  +K     L   L   G +V  +HG++ Q  R+  ++ FK   + +
Sbjct: 448 KLDPNGQKRIVVFVARKDMAHKLRIILGLLGMAVAELHGSLTQEQRLDSVNKFKSLQVPV 507

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-------- 350
           ++ +DLA+RGLDIP +  V N+D+P   E Y+HR+GRT RAGR G++ T V         
Sbjct: 508 LICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSITFVGEASAERSI 567

Query: 351 -KEDIKHIDAIE----KLIEKKVDW 370
            K+ I+ ++  E    K + + VDW
Sbjct: 568 VKDAIRGVNDSEIPGSKAVGRNVDW 592


>gi|226952982|ref|ZP_03823446.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter sp. ATCC
           27244]
 gi|294650564|ref|ZP_06727921.1| ATP-dependent RNA helicase RhlB [Acinetobacter haemolyticus ATCC
           19194]
 gi|226836303|gb|EEH68686.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter sp. ATCC
           27244]
 gi|292823561|gb|EFF82407.1| ATP-dependent RNA helicase RhlB [Acinetobacter haemolyticus ATCC
           19194]
          Length = 383

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 142/374 (37%), Positives = 222/374 (59%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++  A+   G+ + TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 5   FETLKLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     ++ R R   PR LIL PTRELA Q+  + +   K  NL +  L+GG+ F+ Q K
Sbjct: 65  LLNNPIQEQRFRGE-PRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKK 123

Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            L+R   D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P 
Sbjct: 124 MLDRNFVDIIVATPGRLIDFVEQKEVWLDRIEFLVIDEADRLLDMGFIPSVKRIVRYSPS 183

Query: 177 T--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTL+FSAT + ++  ++  +L  P  +E+     T   +E        +   K  L
Sbjct: 184 KEQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNVDVEQRVYVVAKE--DKYKL 241

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ +L+ +  +   +IF N++  V  L   L++ G+ V  + G I Q  R+K+L  FK+G
Sbjct: 242 LQDILRDE-PIDKVMIFANRRDQVRRLYDHLKRDGYKVGMLSGEIAQDKRLKMLDQFKQG 300

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +M+A+D+A RG+ +  V HV NF +P ++++Y+HRIGRTGRAG  G + + ++++D 
Sbjct: 301 KHNIMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDA 360

Query: 355 KHIDAIEKLIEKKV 368
            ++  IEK I KK+
Sbjct: 361 FYLPEIEKAIGKKL 374


>gi|195952677|ref|YP_002120967.1| DEAD/DEAH box helicase domain protein [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932289|gb|ACG56989.1| DEAD/DEAH box helicase domain protein [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 364

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 148/362 (40%), Positives = 215/362 (59%), Gaps = 10/362 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           LS ++  A+ DAGY +PTPIQ   IPL L+ +D+ G A TGTGKT +F +P++  L+KG+
Sbjct: 7   LSLELQKALEDAGYKEPTPIQRDAIPLALEGYDILGQAATGTGKTGAFAIPIVEKLQKGK 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE-RGADVL 126
             V+    L+L PTRELA QV +      K   L+  +  GG   +     L+ +  D+L
Sbjct: 67  PDVK---ALVLTPTRELAIQVKEQIYMLTKYKRLSSYVFYGGTSVKQNLDILQNKNVDIL 123

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGRI D  +R  L ++ +E LV+DE D+MLDMGFI  I+ I S +P  R T +FSAT
Sbjct: 124 IGTPGRIKDLIDRKALNLSKVEYLVLDEFDQMLDMGFIEDIEYIISFLPKERTTYMFSAT 183

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT-- 244
           +   ++ +++ FL++  +            IE   +    + S     + +L+   DT  
Sbjct: 184 VPSRIELLAKRFLKSDFKFVKVQSVELKPNIEEKMI----KLSSPGEKIHELMHIIDTHP 239

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
           M+  +IF   KK+  +L   L K+G    A+HG++ QR R K LS FK G + +++A+D+
Sbjct: 240 MEKMLIFVKTKKDAKDLFFLLTKKGIRAQALHGDLTQRQREKALSAFKSGAVSILIATDV 299

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           AARGLDI DVG V N+++P   E YIHRIGRTGR G+ GKAF+L+  ED K +  I+KL 
Sbjct: 300 AARGLDIKDVGVVINYNIPEDPELYIHRIGRTGRIGKSGKAFSLICPEDSKALWRIKKLR 359

Query: 365 EK 366
            K
Sbjct: 360 SK 361


>gi|156548270|ref|XP_001601432.1| PREDICTED: similar to GA21647-PA [Nasonia vitripennis]
          Length = 460

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 139/369 (37%), Positives = 220/369 (59%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLG+   +  A  D  +  PT IQ + IPL +Q  DV G+A+TG+GKTA+F LP+L
Sbjct: 24  LTWKDLGIVDSLCQACEDLKWKAPTKIQREAIPLTIQGKDVIGLAETGSGKTAAFALPIL 83

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      LIL PTRELA Q+++ FE  G +  +   +++GG+    Q+  L 
Sbjct: 84  QALLENPQRYF---ALILTPTRELAFQISEQFEALGASIGVKCVVIVGGMDMMTQSLMLA 140

Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGR++DH    K   + +++ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 141 KKPHIIIATPGRLVDHLENTKGFNLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERR 200

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATMT ++QK+    LQNP ++EV+T   T E ++  +V    ++ K   L+  L 
Sbjct: 201 TLLFSATMTKKVQKLQRASLQNPVKVEVSTKYQTVEKLQQYYVFIPVKF-KDVYLVHIL- 258

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++ +  + +IFC+   N +     L   GF    +HG + Q  R+  L+ FK     ++
Sbjct: 259 -NELSGNSFMIFCSTCNNTMRTALLLRSLGFMAVPLHGQMSQNKRIAALTKFKAKNRSIL 317

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR G + T V + D++    
Sbjct: 318 ISTDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGISVTFVTQYDVELYQR 377

Query: 360 IEKLIEKKV 368
           IE+LI K++
Sbjct: 378 IEQLIGKQL 386


>gi|327439299|dbj|BAK15664.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 481

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 149/432 (34%), Positives = 240/432 (55%), Gaps = 31/432 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  LSP++  A+ D  Y  PT +Q K +P  L+  D+   AQTG+GKTA+F +P+  
Sbjct: 4   NFNEFPLSPELQNALKDLDYSTPTEVQQKVLPHALKEQDLIVKAQTGSGKTAAFAIPICE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +E    +   P+ L+L PTRELA QV + F   G+   +    L G  PF  Q  +L++
Sbjct: 64  NIEWIENK---PQALVLTPTRELAVQVKEEFTNIGRYKRIKATALYGKQPFRYQQDELKQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              + + TPGR+LDH  +G L ++ I  +V+DEAD ML+MGFI  ++ I + V      +
Sbjct: 121 KTHIAVGTPGRVLDHIEKGTLKLDKIRYVVLDEADEMLNMGFIEQVEAILAHVEHREVMM 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL--L 239
           LFSAT+ + ++K++ N+L +P  IEV +  + A  IEH  +    Q  +K A ++++  +
Sbjct: 181 LFSATVPESIKKLASNYLNDPVDIEVQSEEA-APKIEHAVIE--VQDEEKTAAVEKIAVV 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++ DT    IIFC  K  V  L   L  + +SV  +HG +DQ +R+ +++++K G  + +
Sbjct: 238 ENPDTC---IIFCRTKDRVDALHDYLYDREYSVDKLHGGMDQSTRLLVMNDYKRGDFRYL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI ++  V N+D+P   E Y+HR GRTGRAG+ GKA T V   +   +  
Sbjct: 295 VATDVAARGIDIENISLVINYDLPMEKEAYVHRTGRTGRAGKEGKAVTFVTPFEHDFLAG 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+LI                 + K+D+  H        +  K+  FD++ ++   +K  
Sbjct: 355 IEELI--------------GFTITKVDLPTHEE------VEAKAEAFDKKMQSRPQKKKQ 394

Query: 420 IPLKESEKISKL 431
              K    I+KL
Sbjct: 395 KNAKVDANITKL 406


>gi|325280173|ref|YP_004252715.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324311982|gb|ADY32535.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
           20712]
          Length = 417

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 137/371 (36%), Positives = 218/371 (58%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F ++ L   V+  +    + + TP+Q +TIP++L+  D+ G AQTGTGKTA++ LP+L
Sbjct: 1   MRFDEVNLDENVLQGIEAMNFQEMTPVQEQTIPVILEGKDIIGCAQTGTGKTAAYTLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
           + L          R +I+ PTRELA Q+   FE +     ++  ++ GG     ++ Q K
Sbjct: 61  SRLVAEGNPDNHIRAVIMVPTRELAQQIDMQFEGFSYFLPISTTVVYGGGDGAGWDQQKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR+L H     + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLLMGADVVIATPGRLLSHIANSGIDLSQVSYFILDEADRMLDMGFFDDIMQIVKQMPTK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT+  +++++++  L++P  I +         I+  ++    Q   K A++Q+
Sbjct: 181 RQTILFSATLPPKIRQLAKQILKDPAEINIAISKPNEAIIQSAYICYETQ---KMAIIQE 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L  S+   K  IIF + K+ V +L +SL++   +V A+H +++Q  R  ++ +FK G   
Sbjct: 238 LF-SKPNRKKTIIFSSSKQKVKDLAYSLKRMKLNVAAMHSDLEQEQREAVMLDFKNGKTD 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+G V N+DVP+  E+YIHRIGRT RA   G A T V + +    
Sbjct: 297 ILVATDIVARGIDIDDIGLVINYDVPHDPEDYIHRIGRTARANADGVAITFVCEPEQGKF 356

Query: 358 DAIEKLIEKKV 368
             IE+ IEK +
Sbjct: 357 HKIEEFIEKDI 367


>gi|301610482|ref|XP_002934775.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
           [Xenopus (Silurana) tropicalis]
          Length = 448

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 140/368 (38%), Positives = 225/368 (61%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG++  V+C   +  G+ +PT IQI+ IP+ LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 21  FRELGVT-DVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQ 79

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G    +  A+++GGI   +Q+  L +
Sbjct: 80  TLLESPQRLY---ALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAK 136

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V+I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 137 KPHVVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L++P +  V++   T E ++  +V   +++  K + L  +L 
Sbjct: 197 FLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQFYVFIPSKF--KDSYLVYIL- 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N   +   L   GF+   +HG + Q  R+  L+ FK  +  +++
Sbjct: 254 NELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSILL 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V++ D++    I
Sbjct: 314 ATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRI 373

Query: 361 EKLIEKKV 368
           E LI KK+
Sbjct: 374 EHLIGKKL 381


>gi|260774368|ref|ZP_05883282.1| ATP-dependent RNA helicase RhlB [Vibrio metschnikovii CIP 69.14]
 gi|260610495|gb|EEX35700.1| ATP-dependent RNA helicase RhlB [Vibrio metschnikovii CIP 69.14]
          Length = 433

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 149/409 (36%), Positives = 232/409 (56%), Gaps = 12/409 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FAD GL P+V+  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADFGLHPQVIEGLDKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT  E    +   PR +I+ PTRELA Q+ ++ E       +  AL  GG  ++ Q  K
Sbjct: 71  LLTTPEAEGRKPNQPRAIIMAPTRELAIQIYNDAESLIATTGIKTALAYGGESYDKQLAK 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++ G DVLI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  +
Sbjct: 131 IQEGVDVLIGTTGRIIDFYKQKAFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           + L  LFSAT++  +Q+++   + NP+ + V     T   I E  F   Y     K ALL
Sbjct: 191 ERLNMLFSATLSYRVQELAFEHMHNPEHVVVEATQKTGHRIKEELF---YPSNEHKMALL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q +++ +   K  I+F N K     +  SL   G  V  + G++ Q+ R +IL  F +G 
Sbjct: 248 QTIIEEEWPDK-AIVFANTKHRCEQVWGSLAADGHRVGLLTGDVPQKKRERILEQFTQGE 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+ +E+Y+HRIGRTGRAG  G + +   +E   
Sbjct: 307 LDILVATDVAARGLHIPLVTHVFNYDLPDDSEDYVHRIGRTGRAGESGSSISFACEEYAV 366

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEK-IDIAQHNHARKNNPIPQKS 403
           ++ AIE+ IE  +   + D ++L   L K + +   +  R+ N    +S
Sbjct: 367 NLPAIEEYIEHSIPMSDYDPTALLTDLPKPLTLRSSSQQRRTNTTGSRS 415


>gi|153834694|ref|ZP_01987361.1| ATP-dependent RNA helicase RhlB [Vibrio harveyi HY01]
 gi|148868890|gb|EDL67950.1| ATP-dependent RNA helicase RhlB [Vibrio harveyi HY01]
          Length = 437

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 146/382 (38%), Positives = 219/382 (57%), Gaps = 9/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FADLGL P+V   +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADLGLKPQVTEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT  E    +   PR +I+ PTRELA Q+ ++ E    +  L  AL  GG  ++ Q  K
Sbjct: 71  LLTTPEHEGRKPTQPRAIIMAPTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLAK 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+LI T GRI+D + +    +NNI+ +V+DEADRM D+GFI  I+ +   +P  +
Sbjct: 131 LQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + L  LFSAT++  +Q+++   + NP+ + V     T   I+      Y     K ALLQ
Sbjct: 191 ERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELF--YPSNEDKMALLQ 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ ++     I+F N K    ++   L   G  V  + G++ Q+ R KIL  F  G +
Sbjct: 249 TLIE-EEWPDRAIVFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGEV 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   ++   +
Sbjct: 308 DLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAIN 367

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
           +  IE+ IE  +   + D S+L
Sbjct: 368 LPPIEEYIEHAIPVSDYDASAL 389


>gi|115379574|ref|ZP_01466663.1| heliCase, c-terminal:dead/deah box helicase, n-terminal
           [Stigmatella aurantiaca DW4/3-1]
 gi|115363432|gb|EAU62578.1| heliCase, c-terminal:dead/deah box helicase, n-terminal
           [Stigmatella aurantiaca DW4/3-1]
          Length = 608

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 145/368 (39%), Positives = 201/368 (54%), Gaps = 2/368 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +V A+   GY +PTPIQ   +P +L+  D+ GIA TGTGKTA+F LP+L  
Sbjct: 38  FESLGLLPPLVEALSALGYEEPTPIQRAALPPLLEGKDLLGIAATGTGKTAAFSLPLLQR 97

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +  G         L+L PTRELA QVA+   +YG+   ++V  L GG     Q + L+RG
Sbjct: 98  ITPGAHAPFTASALVLVPTRELAMQVAEAIHRYGQKLGISVVPLYGGQVISQQLRVLKRG 157

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR LDH  R  L +  + ++V+DEAD MLDMGF   ++ I S  P  RQT L
Sbjct: 158 VDVVVATPGRALDHLQRKTLKLEQVRVVVLDEADEMLDMGFAEDLEAILSSTPEKRQTAL 217

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQS 241
           FSAT+   +  ++E  L+ P R+ +      +  +       Y    + K A L ++L  
Sbjct: 218 FSATLPPRIASIAERHLREPVRVRIAREKVESGELPRVRQTAYIVPRAFKVATLSRVLDV 277

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      I+FC  +  V  L  SL   G+   A                    +  L+VA
Sbjct: 278 EAPTA-AIVFCRTRTEVDELTLSLNGHGWRXXAXXXXXXXXXXXGXXXXRLSHSADLLVA 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  + HV NFDVPN  E Y+HRIGRTGRAGR G A TLV   + + +  IE
Sbjct: 337 TDVAARGLDISRLSHVVNFDVPNAPEAYVHRIGRTGRAGREGVAITLVEPREHRLLRNIE 396

Query: 362 KLIEKKVD 369
           KL  ++++
Sbjct: 397 KLTGQRIE 404


>gi|331086825|ref|ZP_08335902.1| hypothetical protein HMPREF0987_02205 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409991|gb|EGG89426.1| hypothetical protein HMPREF0987_02205 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 529

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 222/369 (60%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG+ P++  AV   G+ + +PIQ K IP+++   D+ G AQTGTGKTA+F +PML  
Sbjct: 6   FEELGICPEIQKAVKHMGFEEASPIQSKAIPVMMTGKDIIGQAQTGTGKTAAFGIPML-- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            EK   + +  + ++L PTRELA QVA+   N  KY   + + V  + GG     Q + L
Sbjct: 64  -EKIDPKNKKLQGIVLCPTRELAIQVAEEIRNLAKY--MHGIKVLPIYGGQEIVKQIRSL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  ++I TPGR++DH  R  + M  +  +++DEAD ML+MGF   I+ I   VP  RQ
Sbjct: 121 KSGTQLIIGTPGRVMDHMRRKTIKMEQVHTVILDEADEMLNMGFREDIETILEGVPEERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + ++++ F +N + I+V     T   IE  +     +   K  +L +LL
Sbjct: 181 TVLFSATMPKAIMEITKKFQKNAELIKVTKKELTVPNIEQFYYEVKPK--NKEEVLTRLL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T K  +IFCN KK V  L  +L  +G+    +HG++ Q  R +++  F+ G   ++
Sbjct: 239 DIY-TPKLSVIFCNTKKQVDLLVTALLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTDIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V  VFN+D+P   E Y+HRIGRTGRAGR G++F+ V+ +++  +  
Sbjct: 298 VATDVAARGIDVDEVEAVFNYDLPQDEEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKLKE 357

Query: 360 IEKLIEKKV 368
           I++  + K+
Sbjct: 358 IQRYCKTKI 366


>gi|227502907|ref|ZP_03932956.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49725]
 gi|227076329|gb|EEI14292.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49725]
          Length = 452

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 143/359 (39%), Positives = 213/359 (59%), Gaps = 11/359 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA+LG++ ++   + D G  +   IQ  T+P+ L   D+ G A+TG GKT  F +P+L  
Sbjct: 11  FAELGVAAEICDGLADRGIARTFAIQELTLPIALNGQDLIGQARTGMGKTFGFGVPLLDR 70

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + +          PR LI+ PTRELA QV  + +    +  + +A + GG P+E Q K L
Sbjct: 71  VFDDADIAPPDGTPRALIVVPTRELAQQVTADLQDAAAHLPVRLAAIYGGRPYEEQIKLL 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPFTR 178
           +RG DV+I TPGR+LD   RG L++ ++ I+V+DEAD MLD+GF+P I+ I  +L     
Sbjct: 131 QRGVDVVIGTPGRLLDLHERGDLVLRHVAIVVLDEADEMLDLGFLPSIEAILEALDGNAH 190

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF---VATYAQYSKKCALL 235
           QT+LFSATM   +  +S  F+  P  I      S A+ + H     V   A    K A++
Sbjct: 191 QTMLFSATMPGAILNLSRQFMHKPVHIRAE---SEADEVTHETTRKVTFQAHRMDKVAVI 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +LQ+Q   ++ IIF   K++   L   L ++GF V A+HG++ Q+SR K L  F+ G 
Sbjct: 248 AHILQAQGRGRS-IIFTRTKRSAAQLADDLAERGFHVGAVHGDLGQKSREKSLQAFRSGE 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           + ++VA+D+AARG+D+ DV HV N+ VP+    +IHRIGRTGRAG  G A TLV  +++
Sbjct: 307 VDILVATDIAARGIDVDDVTHVINYQVPDDPMTFIHRIGRTGRAGHTGTAVTLVGYDEL 365


>gi|153215195|ref|ZP_01949876.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 1587]
 gi|153831172|ref|ZP_01983839.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 623-39]
 gi|124114840|gb|EAY33660.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 1587]
 gi|148873341|gb|EDL71476.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 623-39]
 gi|327485046|gb|AEA79453.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae LMA3894-4]
          Length = 460

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 142/368 (38%), Positives = 225/368 (61%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P+++  +   G+   TPIQ +++P +L+  DV G  +TG+GKTA+F L +L+ 
Sbjct: 6   FAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+    L+L PTRELA QVA +    G+  +N+ V  L GG+P   Q   LE 
Sbjct: 66  LNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH ++ ++ ++ +  LV+DEADRML+MGF   ++ I +  P  RQTL
Sbjct: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++++  +N   I+V     T+ +I   F       ++  AL   LL  
Sbjct: 183 LFSATYPTSIEQIAQSVTRNALMIKVEATHDTS-SIRQYFYKVEGSAARDEALETLLLHH 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q T  + ++FCN K+ V N+  +L + GFSV  +HG+++QR R + L  F   +I ++VA
Sbjct: 242 QPT--SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFN+D+    E ++HRIGRTGRAG  G AF+  +  +   +  I+
Sbjct: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359

Query: 362 KLIEKKVD 369
           + ++  ++
Sbjct: 360 EYMDIAIE 367


>gi|237743040|ref|ZP_04573521.1| ATP-dependent RNA helicase [Fusobacterium sp. 7_1]
 gi|229433600|gb|EEO43812.1| ATP-dependent RNA helicase [Fusobacterium sp. 7_1]
          Length = 528

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 140/372 (37%), Positives = 216/372 (58%), Gaps = 16/372 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F DLGLS KV+  +   GY  PTPIQ  TIP +L+   D+ G AQTGTGKTA+F LP++
Sbjct: 9   EFRDLGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E     +   + ++L PTRELA QVA+       +  + V  + GG   + Q K ++
Sbjct: 69  ENFE----NLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR++D   R  L +N+++  ++DEAD ML+MGFI  I+ I +     ++ 
Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFIEDIEKILTFTNEDKRM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
           L FSATM DE+ KV++N ++  + + V +   T +  E  +  V    ++   C ++   
Sbjct: 185 LFFSATMPDEIMKVAKNHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRII--- 241

Query: 239 LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               D  K   GIIFC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I
Sbjct: 242 ----DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKI 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T +  ++ + 
Sbjct: 298 NILVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRR 357

Query: 357 IDAIEKLIEKKV 368
           +  I+K ++K++
Sbjct: 358 LLQIQKAVKKEI 369


>gi|325663268|ref|ZP_08151718.1| hypothetical protein HMPREF0490_02459 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470722|gb|EGC73952.1| hypothetical protein HMPREF0490_02459 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 529

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 222/369 (60%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG+ P++  AV   G+ + +PIQ K IP+++   D+ G AQTGTGKTA+F +PML  
Sbjct: 6   FEELGICPEIQKAVKHMGFEEASPIQSKAIPVMMTGKDIIGQAQTGTGKTAAFGIPML-- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            EK   + +  + ++L PTRELA QVA+   N  KY   + + V  + GG     Q + L
Sbjct: 64  -EKIDPKNKKLQGIVLCPTRELAIQVAEEIRNLAKY--MHGIKVLPIYGGQEIVKQIRSL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  ++I TPGR++DH  R  + M  +  +++DEAD ML+MGF   I+ I   VP  RQ
Sbjct: 121 KSGTQLIIGTPGRVMDHMRRKTIKMEQVHTVILDEADEMLNMGFREDIETILEGVPEERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + ++++ F +N + I+V     T   IE  +     +   K  +L +LL
Sbjct: 181 TVLFSATMPKAIMEITKKFQKNAEVIKVTKKELTVPNIEQFYYEVKPK--NKEEVLTRLL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T K  +IFCN KK V  L  +L  +G+    +HG++ Q  R +++  F+ G   ++
Sbjct: 239 DIY-TPKLSVIFCNTKKQVDLLVTALLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTDIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V  VFN+D+P   E Y+HRIGRTGRAGR G++F+ V+ +++  +  
Sbjct: 298 VATDVAARGIDVDEVEAVFNYDLPQDEEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKLKE 357

Query: 360 IEKLIEKKV 368
           I++  + K+
Sbjct: 358 IQRYCKTKI 366


>gi|254442945|ref|ZP_05056421.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198257253|gb|EDY81561.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 436

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 211/364 (57%), Gaps = 5/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA L LS  ++ ++   GY + TPIQ   IP+VL+  D+   AQTG+GKTA+F LP++
Sbjct: 1   MSFASLSLSDFLLRSLETLGYEEATPIQAAAIPVVLKGSDLLAAAQTGSGKTAAFSLPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKY--GKNYNLTVALLIGGIPFEAQNKK 118
             L     +   PR L+L PTRELA QV    E+Y  G      V +  GG+ ++AQ K 
Sbjct: 61  ERLAGMEEQKAKPRFLVLVPTRELAVQVGAAIERYAEGAPRKARVLVAFGGVGYDAQMKA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              G +V++ TPGR++D   R  ++++ +E+LV+DEADR+L +GF   +  I  ++P  R
Sbjct: 121 AYAGVEVVVATPGRLIDLAERRSVVLDEVEMLVLDEADRLLALGFAEELNTILEMLPEGR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT    +  ++   L++P +IE+   S   E+I     A     + +  LL+ L
Sbjct: 181 QNLLFSATFPQNVVSLANALLKDPVKIELEAASRPVESIAQR--AIEVDGNSRTGLLRHL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+++   +  ++F   K+   N+   L+K G    A+HGN+ Q  R + L  FK+  +++
Sbjct: 239 LETEG-WERVLVFVGSKRRAENVTVKLQKHGIKAVALHGNMSQDKRARSLERFKQSKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI  +  V N+D+P  A +Y+HRIGRTGRAG  G A   +  +   H  
Sbjct: 298 LMATDVAARGIDIAGLPCVVNYDLPRSAADYVHRIGRTGRAGESGLAVNFITDDKDAHFR 357

Query: 359 AIEK 362
            IEK
Sbjct: 358 LIEK 361


>gi|153801095|ref|ZP_01955681.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-3]
 gi|124123328|gb|EAY42071.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-3]
          Length = 460

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 142/368 (38%), Positives = 224/368 (60%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P+++  +   G+   TPIQ +++P +L+  DV G  +TG+GKTA+F L +L+ 
Sbjct: 6   FAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+    L+L PTRELA QVA +    G+  +N+ V  L GG+P   Q   LE 
Sbjct: 66  LNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH ++ ++ ++ +  LV+DEADRML+MGF   ++ I +  P  RQTL
Sbjct: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++++   N   I+V     T+ +I   F       ++  AL   LL  
Sbjct: 183 LFSATYPTSIEQIAQSVTHNALMIKVEATHDTS-SIRQYFYKVEGSAARDEALETLLLHH 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q T  + ++FCN K+ V N+  +L + GFSV  +HG+++QR R + L  F   +I ++VA
Sbjct: 242 QPT--SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFN+D+    E ++HRIGRTGRAG  G AF+  +  +   +  I+
Sbjct: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359

Query: 362 KLIEKKVD 369
           + ++  ++
Sbjct: 360 EYMDIAIE 367


>gi|15642559|ref|NP_232192.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121587883|ref|ZP_01677639.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 2740-80]
 gi|153819936|ref|ZP_01972603.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae NCTC 8457]
 gi|153823551|ref|ZP_01976218.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae B33]
 gi|227082681|ref|YP_002811232.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae M66-2]
 gi|254225949|ref|ZP_04919551.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V51]
 gi|254851104|ref|ZP_05240454.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MO10]
 gi|255744466|ref|ZP_05418418.1| ATP-dependent RNA helicase DbpA [Vibrio cholera CIRS 101]
 gi|262154711|ref|ZP_06028837.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae INDRE 91/1]
 gi|298500611|ref|ZP_07010415.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MAK 757]
 gi|9657150|gb|AAF95705.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547853|gb|EAX57938.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 2740-80]
 gi|125621575|gb|EAZ49907.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V51]
 gi|126509518|gb|EAZ72112.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae NCTC 8457]
 gi|126518935|gb|EAZ76158.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae B33]
 gi|227010569|gb|ACP06781.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae M66-2]
 gi|254846809|gb|EET25223.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MO10]
 gi|255737991|gb|EET93384.1| ATP-dependent RNA helicase DbpA [Vibrio cholera CIRS 101]
 gi|262030551|gb|EEY49189.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae INDRE 91/1]
 gi|297540780|gb|EFH76837.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MAK 757]
          Length = 460

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 142/368 (38%), Positives = 225/368 (61%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P+++  +   G+   TPIQ +++P +L+  DV G  +TG+GKTA+F L +L+ 
Sbjct: 6   FAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+    L+L PTRELA QVA +    G+  +N+ V  L GG+P   Q   LE 
Sbjct: 66  LNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH ++ ++ ++ +  LV+DEADRML+MGF   ++ I +  P  RQTL
Sbjct: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++++  +N   I+V     T+ +I   F       ++  AL   LL  
Sbjct: 183 LFSATYPASIEQIAQSVTRNALMIKVEATHDTS-SIRQYFYKVEGSAARDEALETLLLHH 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q T  + ++FCN K+ V N+  +L + GFSV  +HG+++QR R + L  F   +I ++VA
Sbjct: 242 QPT--SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFN+D+    E ++HRIGRTGRAG  G AF+  +  +   +  I+
Sbjct: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359

Query: 362 KLIEKKVD 369
           + ++  ++
Sbjct: 360 EYMDIAIE 367


>gi|311897562|dbj|BAJ29970.1| putative ATP-dependent RNA helicase [Kitasatospora setae KM-6054]
          Length = 765

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 142/348 (40%), Positives = 196/348 (56%), Gaps = 6/348 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   VV A+   G   P PIQ  TIP  L   DV G  +TG+GKT SF LP+LT 
Sbjct: 66  FGDLGLHDDVVRALAKRGVTTPFPIQAATIPDALAGKDVLGRGRTGSGKTLSFGLPLLTR 125

Query: 63  LEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G R + + PR LIL PTRELA QVAD  E +G    L + ++ GG     Q   LER
Sbjct: 126 LADGERTKAKHPRGLILVPTRELAMQVADALEPFGSVLGLRLKVVCGGTSMSNQIYALER 185

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVL+ TPGR+ D  NRG   M+ +EI V+DEAD+M DMGF+P +  I  LVP   Q L
Sbjct: 186 GVDVLVATPGRLRDLINRGSAKMDEVEIAVLDEADQMADMGFLPEVTEILDLVPAGGQRL 245

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ +E+  + + +L+NP   EV+  +    T+ H  +    +   K  +   +   
Sbjct: 246 LFSATLENEIDTLVKRYLKNPVTHEVDPSAGAVTTMTHHILVVKPK--DKAPITSAIAAR 303

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      IIF   +     +   L + G    A+HG + Q +R ++L +FK+G + ++VA
Sbjct: 304 KGRT---IIFVRTQMGADRVAQQLVESGVKADALHGGMTQGARTRVLGDFKDGYLNVVVA 360

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   TLV
Sbjct: 361 TDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVTLV 408


>gi|204927708|ref|ZP_03218909.1| ATP-dependent rna helicase, dead/deah box family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204323050|gb|EDZ08246.1| ATP-dependent rna helicase, dead/deah box family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 457

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 141/355 (39%), Positives = 213/355 (60%), Gaps = 8/355 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L  ++     +   + L+L 
Sbjct: 22  GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF AQ   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQTLLFSAT  D +  +S   
Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIHFAPATRQTLLFSATWPDAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            Q P RIE++T  +    IE  F  T A   +K +LLQ LL SQ    + ++FCN KK+ 
Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L   G S  A+HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
           N+++    E ++HRIGRT RAG  G A +  A E+ +  + + ++++ K++WLN 
Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369


>gi|54301879|ref|YP_131872.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46915299|emb|CAG22072.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
          Length = 455

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 143/374 (38%), Positives = 216/374 (57%), Gaps = 23/374 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGL   ++  + +  Y +PTPIQ + IP VL   D+   A TG+GKTA+F LPML 
Sbjct: 36  NFTELGLISPLLARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPMLQ 95

Query: 62  IL----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGG 109
            L           KG    R    LIL PTRELA QVAD+ + Y  ++N  +    + GG
Sbjct: 96  HLFLQQHLSSKSSKGNYVTR----LILVPTRELAKQVADSIKSYAVHFNGAIKTVAVFGG 151

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +    Q   L  G D+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  
Sbjct: 152 VSANTQMLALRGGTDILVATPGRLLDLISSNAIKLDRVKTLVLDEADRMLSLGFTDELSA 211

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQY 228
           +  L+P  +QTLLFSAT  +++Q +++  L +P  +E+   S+ A T ++  F     + 
Sbjct: 212 LLGLLPKNKQTLLFSATFPEQVQTLTQELLNDP--VEIQLQSADASTLVQRVFTVNKGE- 268

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
             K ALL  L++ Q+  +  +IF N K +  +L   L K+G +    HG+  Q +R ++L
Sbjct: 269 --KTALLAHLIK-QNEWRQALIFVNAKNSCEHLADKLSKRGITAEVFHGDKGQGARTRVL 325

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             FK G I++++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G A +L
Sbjct: 326 DAFKAGEIEVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSL 385

Query: 349 VAKEDIKHIDAIEK 362
           +  +D  H   IEK
Sbjct: 386 IDHDDYHHFKVIEK 399


>gi|71737101|ref|YP_273396.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557654|gb|AAZ36865.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 482

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 222/373 (59%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  ++P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 95  FHDFNIAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 154

Query: 63  LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L +        +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 155 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 214

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 215 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 274

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T+++  +++ +  +P  +E+ + +  ++ +E    A     + K  LL
Sbjct: 275 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 332

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ + +     ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 333 YNLV-TDNGWGRVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 391

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 392 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 451

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 452 QLPAIEEKLGRKI 464


>gi|327275873|ref|XP_003222696.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Anolis
           carolinensis]
          Length = 924

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 136/357 (38%), Positives = 209/357 (58%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + IP+ +   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGIPVAMSGRDMIGIAKTGSGKTAAFIWPMLIH 314

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   ++++ S V  
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSVASHVRP 430

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E I    V  +A    K   L 
Sbjct: 431 ERQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDITQ-IVEIFASGPNKWNWLT 489

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L    +  + ++F  +K N   L ++L+++G S+  +HG++DQ  R K++S+FK+G  
Sbjct: 490 SRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHSLGLLHGDMDQSERNKVISDFKKGAF 549

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTHKD 606


>gi|224023569|ref|ZP_03641935.1| hypothetical protein BACCOPRO_00272 [Bacteroides coprophilus DSM
           18228]
 gi|224016791|gb|EEF74803.1| hypothetical protein BACCOPRO_00272 [Bacteroides coprophilus DSM
           18228]
          Length = 637

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 223/369 (60%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+SP++  A+ + GY  P P+Q + IP +L   +DV  +AQTGTGKTA+F LP++ 
Sbjct: 4   FEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLPLIQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++  R   R+P+ LIL PTREL  Q+A +   Y K   +L +  + GG   E+Q K L+
Sbjct: 64  KIDVSR---RVPQALILCPTRELCLQIAGDLTDYSKYITDLKILPVYGGSSIESQIKSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGR++D   R    ++ +  +V+DEAD ML+MGF   I  I   VP  R T
Sbjct: 121 AGVHIIVATPGRLIDLMERKVARLDTVADVVMDEADEMLNMGFTDSINAILEKVPEERNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSATM+ E+ ++++ +L + K I + T +  ++ + H     +A+   K   L++++ 
Sbjct: 181 LMFSATMSPEIARIAKTYLHDAKEITIGTKNEGSKNVHHIAYTVHAK--DKYLALKRVVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L + G++  ++HG + Q  R  ++  F++  +QL+V
Sbjct: 239 FYPQI-YGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQCHLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVNDLTHVINYGLPDDTESYTHRSGRTGRAGKTGVSIAIINLREKGKMREI 357

Query: 361 EKLIEKKVD 369
           E++I+KK D
Sbjct: 358 ERIIKKKFD 366


>gi|114561648|ref|YP_749161.1| ATP-dependent RNA helicase RhlB [Shewanella frigidimarina NCIMB
           400]
 gi|122300890|sp|Q088J2|RHLB_SHEFN RecName: Full=ATP-dependent RNA helicase rhlB
 gi|114332941|gb|ABI70323.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 434

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 141/390 (36%), Positives = 231/390 (59%), Gaps = 15/390 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FAD  L P+++ A+ + G+   TPIQ  ++P++L   D+ G AQTGTGKT +F++     
Sbjct: 11  FADFPLKPEILAALNENGFEFCTPIQALSLPILLNAKDIAGQAQTGTGKTMAFLVATFNH 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L +      +   PR +I+ PTRELA Q+A + +    +  L V ++ GG  +E Q   
Sbjct: 71  LLNVAAPESRKATEPRAIIMAPTRELAIQIAKDAKLLAAHTGLKVGIVYGGESYETQRAV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176
           L++G D+LI T GRI+D+  +G + +++I+ +V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LDKGVDILIGTTGRIIDYVRQGVISLSHIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAK 190

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           +R  +LFSAT++ ++Q+++ + + +P+++E+     T++ I E  F   Y     K  LL
Sbjct: 191 SRLNMLFSATLSMKVQELAYDHMNDPEKVEIEPLEKTSKNIKEEIF---YPSMEDKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++ +D     I+F N K +   L   LE  G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 LSLIE-EDWPDKAIVFSNTKHSCEKLWSYLEGDGHRVGLLTGDVPQKKRIRILEQFTSGE 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG+ G + +   +E   
Sbjct: 307 IDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISISFACEEYAL 366

Query: 356 HIDAIEKLIEKKVDWLNGD----LSSLNPP 381
           ++  IE  I   +   N D    L  + PP
Sbjct: 367 NLPEIETYINHSIPVSNYDKDALLDDIPPP 396


>gi|326524209|dbj|BAJ97115.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 764

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 142/355 (40%), Positives = 214/355 (60%), Gaps = 4/355 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D G    ++ A+   GY KPT IQ + +P+VL   D+ GIA+TG+GKTA+FVLPM+ 
Sbjct: 215 NFEDCGFPVPLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIV 274

Query: 62  -ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            I+++    +   P  +I  PTRELA Q+    +K+ K YNL VA + GG+    Q K+L
Sbjct: 275 HIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKPYNLQVAAVYGGVSKFEQFKEL 334

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++++ TPGR++D      L M     LV+DEADRM D+GF P I++I   +   RQ
Sbjct: 335 KSGCEIVVATPGRLIDLLKMKALRMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 394

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  ++++++   L +P R+ V    S  E I+       +   K   LL+++ 
Sbjct: 395 TLLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKMP 454

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D   + ++F  +K  V  + + L + GF V A+HG+ DQ SRM+ L  FK G   ++
Sbjct: 455 GMIDD-GDVLVFATKKARVDEVENQLNQHGFKVAALHGDKDQASRMETLQKFKSGIYHVL 513

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKED 353
           VA+D+AARGLDI  +  V NFD+    + +IHRIGRTGRAG + G A+TL+ +++
Sbjct: 514 VATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKE 568


>gi|47217820|emb|CAG07234.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 737

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 140/395 (35%), Positives = 225/395 (56%), Gaps = 22/395 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 103 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGSGKTAAFIWPMLVH 162

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK Y+L    + GG     Q 
Sbjct: 163 IMDQKELEAGEG----PIAVIVCPTRELCQQIHAECKRFGKAYSLRSVAVYGGGSMWEQA 218

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 219 KALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRP 278

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   ++++++ + L +P R+         E +    V      S K + L 
Sbjct: 279 DRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQV-VELLLSGSDKWSWLT 337

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + L    +  + +IF  +K N   L  +L ++G+S+  +HG++DQ  R K++S+FK+  +
Sbjct: 338 RRLVEFTSSGSVLIFVTKKTNSEELATNLTQEGYSLGLLHGDMDQSERNKVISDFKKSNM 397

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED--- 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D   
Sbjct: 398 PILVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTSKDSSF 457

Query: 354 ----IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
               +++++   + + K++     DL+  NP   K
Sbjct: 458 AGDLVRNLEGANQAVSKELM----DLAMQNPWFRK 488


>gi|117921368|ref|YP_870560.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117613700|gb|ABK49154.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 487

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 143/364 (39%), Positives = 219/364 (60%), Gaps = 4/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY++ T +Q + IPL L+  D+   AQTGTGKTASF LP+L
Sbjct: 22  MKFDTLGLSSPILNAIAECGYLQLTQVQQQVIPLALEGKDIMACAQTGTGKTASFALPVL 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K      + R L++ PTRELA QV  N +KY +   L    + GG     Q K +E
Sbjct: 82  EQLSKQPNDKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVE 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+ D   +  L ++++  LVIDEADRMLD+GF+  I+ +  L+    QT
Sbjct: 142 QGVDILVATPGRLFDIIGQFHLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIATEHQT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT +D ++++S   L  P+ + V   ++TA T+E   +       +K  LL +L+ 
Sbjct: 202 MLFSATYSDAVKQLSHKMLNQPEWVNV-AENTTASTVEQ--LVYRVDKRRKAELLSELV- 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  ++F + K+   +L   L   G S    HG+  Q +R ++L +FK G ++++V
Sbjct: 258 GRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLV 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N ++P  AE+Y+HRIGRTGRAG  G+A + V+  D + +  I
Sbjct: 318 ATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEI 377

Query: 361 EKLI 364
           E LI
Sbjct: 378 EALI 381


>gi|254284073|ref|ZP_04959041.1| RNA helicase DbpA [gamma proteobacterium NOR51-B]
 gi|219680276|gb|EED36625.1| RNA helicase DbpA [gamma proteobacterium NOR51-B]
          Length = 474

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 143/362 (39%), Positives = 209/362 (57%), Gaps = 11/362 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  + A+   GY   TP+Q +++PL+L   DV   A+TG+GKTA+F L +L  
Sbjct: 19  FSSLPLAPNQLDALDALGYKAMTPVQAQSLPLILSGRDVIVRAKTGSGKTAAFALGLLAT 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +     R    +  ++ PTRELA QV     +      N+ + LL GG+P   Q   L  
Sbjct: 79  INP---RFFGVQAFVMCPTRELADQVGKEIRRLASRMPNIKLVLLCGGVPLGPQRDSLSH 135

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI DH  RG L + +++ LV+DEADRMLDMGF   I+ I S +P  RQTL
Sbjct: 136 GAHIVVGTPGRIEDHLKRGSLNIESVKTLVLDEADRMLDMGFADAIKQIISGMPGDRQTL 195

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           LFSAT   ++Q++S +  +NP  + V+  +     IE  F  V  + + +  CAL +   
Sbjct: 196 LFSATYPQDIQRISRSIQRNPASVTVDDVAHNEAVIEQLFYEVNKHERQATLCALFEHYR 255

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +     N ++FCN KK    +   L  QG    AIHG+++QR R ++L      +  ++
Sbjct: 256 PA-----NAVVFCNTKKQCDEVAVFLRGQGIEARAIHGDLEQRERDQVLLQLTNDSCPVL 310

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI D+  V N+++P   E Y+HRIGRTGRAG  GKA ++V   +   I A
Sbjct: 311 VATDVAARGLDIKDLEMVVNYELPRDPEVYVHRIGRTGRAGAVGKACSIVVPAESPRIRA 370

Query: 360 IE 361
           IE
Sbjct: 371 IE 372


>gi|326526777|dbj|BAK00777.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 731

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 135/370 (36%), Positives = 209/370 (56%), Gaps = 25/370 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ +  L  +++ A+   GY KP+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPML+
Sbjct: 311 NWPESKLGTELLRAIEKVGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLS 370

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + +            P  +++ PTRELA Q+ +   K+     + V  ++GG   E Q 
Sbjct: 371 YITRLPPISEDNEAEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQG 430

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            K+ +G +V+I TPGR+LD   R   ++N    +V+DEADRM+DMGF P +  +   +P 
Sbjct: 431 FKIRQGCEVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 490

Query: 177 T-----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
           +                 R T +FSATM   +++++  +L+NP  + + T     + I  
Sbjct: 491 SNLKPENEEEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQ 550

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
             +    + S+K + LQ++L      K  I+FCN KK+  N    L+K GF V A+HG  
Sbjct: 551 NVIMV--KESEKMSRLQKILTDLGD-KTAIVFCNTKKSADNRAKDLDKAGFRVTALHGGK 607

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q  R   L  F+     ++VA+D+A RG+DIPDV HV N+++P+  + Y HRIGRTGRA
Sbjct: 608 SQDQREISLDGFRNRRFNVLVATDVAGRGIDIPDVAHVINYEMPSSVDTYTHRIGRTGRA 667

Query: 340 GRHGKAFTLV 349
           G+ G A + +
Sbjct: 668 GKKGLATSFL 677


>gi|323345624|ref|ZP_08085847.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
           ATCC 33269]
 gi|323093738|gb|EFZ36316.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
           ATCC 33269]
          Length = 548

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 141/375 (37%), Positives = 228/375 (60%), Gaps = 12/375 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  +   TP+Q + IP +L + DV G+AQTGTGKTA+++LP+L
Sbjct: 1   MYFDELNLNNNVLDALYDMHFDTCTPVQERCIPEILNKRDVLGVAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT----VALLIG--GIPFEA 114
           ++L+ G         +I+ PTRELA Q+    + +G  Y L+    VA+  G  G  ++ 
Sbjct: 61  SMLDDGGYPKDAINCIIMSPTRELAQQIDQAMQGFG--YYLSGVSSVAVYGGNDGNRYDQ 118

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           + K L  GADV+I TPGR + H + G + ++ +   ++DEADRMLDMGF   I  I   +
Sbjct: 119 ELKSLRLGADVVIATPGRFISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKQL 178

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P T QT++FSATM D++++++   L+NP  I++   S  AE I       Y   ++K  +
Sbjct: 179 PPTCQTIMFSATMPDKIEELANTLLKNPVTIKLAV-SKPAEKIRQSAYVCYE--TQKMDI 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           ++ +  + D +K  IIF   K+ V  +  +L+++  +   +H +++Q  R  ++  FK G
Sbjct: 236 IKNIFNAGD-LKRVIIFSGSKQKVKQITKALQQKNVNCGEMHSDLEQAQRDDMMFKFKSG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+ +RG+DI D+  V N+DVP+ AE+Y+HRIGRT RA R G A TL+ ++DI
Sbjct: 295 QLDVIVATDIISRGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGVAITLINEDDI 354

Query: 355 KHIDAIEKLIEKKVD 369
            +   IEK + K V+
Sbjct: 355 YYFQQIEKFLGKPVE 369


>gi|242041163|ref|XP_002467976.1| hypothetical protein SORBIDRAFT_01g037410 [Sorghum bicolor]
 gi|241921830|gb|EER94974.1| hypothetical protein SORBIDRAFT_01g037410 [Sorghum bicolor]
          Length = 766

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 143/357 (40%), Positives = 215/357 (60%), Gaps = 4/357 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D G    ++ A+    Y KPT IQ + +P+VL   D+ GIA+TG+GKTA+FVLPM+ 
Sbjct: 220 NFQDCGFPVPLMNAIAKQAYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIV 279

Query: 62  -ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            I+++    +   P  +I  PTRELA Q+    +K+ K YNL VA + GG+    Q K+L
Sbjct: 280 HIMDQPELEKEEGPIGVICAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKEL 339

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G +V+I TPGR++D      L M     LV+DEADRM D+GF P I++I   +   RQ
Sbjct: 340 KAGCEVVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 399

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  ++++++   L +P R+ V       E I+       +   K   LL++L 
Sbjct: 400 TLLFSATMPYKVERLAREILTDPIRVTVGQVGGANEDIKQVVNVLPSDVEKMPWLLEKLP 459

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D   + ++F ++K  V  +   L ++GF + A+HG+ DQ SRM+ L  FK GT  ++
Sbjct: 460 GMIDD-GDVLVFASKKARVDEIEKELNQRGFRIAALHGDKDQASRMETLQKFKSGTYHVL 518

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIK 355
           VA+D+AARGLDI  +  V NFD+    + +IHRIGRTGRAG + G A+TL+ +++ +
Sbjct: 519 VATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEAR 575


>gi|297581406|ref|ZP_06943329.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC385]
 gi|297534244|gb|EFH73082.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC385]
          Length = 460

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 142/368 (38%), Positives = 225/368 (61%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P+++  +   G+   TPIQ +++P +L+  DV G  +TG+GKTA+F L +L+ 
Sbjct: 6   FAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+    L+L PTRELA QVA +    G+  +N+ V  L GG+P   Q   LE 
Sbjct: 66  LNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH ++ ++ ++ +  LV+DEADRML+MGF   ++ I +  P  RQTL
Sbjct: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++++  +N   I+V     T+ +I   F       ++  AL   LL  
Sbjct: 183 LFSATYPASIEQIAQSVTRNALMIKVEATHDTS-SIRQYFYKVEGSAARDEALETLLLHH 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q T  + ++FCN K+ V N+  +L + GFSV  +HG+++QR R + L  F   +I ++VA
Sbjct: 242 QPT--SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFN+D+    E ++HRIGRTGRAG  G AF+  +  +   +  I+
Sbjct: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359

Query: 362 KLIEKKVD 369
           + ++  ++
Sbjct: 360 EYMDIAIE 367


>gi|149908416|ref|ZP_01897079.1| putative ATP-dependent RNA helicase DbpA [Moritella sp. PE36]
 gi|149808579|gb|EDM68514.1| putative ATP-dependent RNA helicase DbpA [Moritella sp. PE36]
          Length = 438

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 146/373 (39%), Positives = 223/373 (59%), Gaps = 20/373 (5%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84
           TPIQ +++P +L+  DV G  +TG+GKTA+F L +L  L+  R R++   TL+L PTREL
Sbjct: 2   TPIQAQSLPSILEGKDVIGQGKTGSGKTAAFGLGLLQRLDVERFRIQ---TLVLCPTREL 58

Query: 85  AAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           A QVA    K  +  +N+ V  L GG+PF  Q   LE GA +++ TPGR+LDH  +G L 
Sbjct: 59  ADQVAKEIRKLARGIHNIKVLTLCGGMPFGPQIGSLEHGAHIIVGTPGRVLDHLTKGTLR 118

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           ++N+   V+DEADRML+MGF   +  I    P  RQTLLFSAT   ++Q ++   + NP+
Sbjct: 119 LDNLTTFVLDEADRMLEMGFQDALDAIVEKAPSDRQTLLFSATFPKKIQAIAAKIMNNPE 178

Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
            +EV +    +   +H +      + ++   ++ LL  Q   ++ +IFCN KK+V ++  
Sbjct: 179 MVEVASTHDDSTIKQHFY--KVKNFGERLDTVRGLLL-QHKPESTVIFCNTKKDVQDVAD 235

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
            L   GFSV A+HG+++QR R + L  F   +I +MVA+D+A+RGLDI  +  V NF V 
Sbjct: 236 ELGHFGFSVIALHGDLEQRDRDQALVRFSNKSISVMVATDVASRGLDIESLDAVINFQVS 295

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD----LSSLN 379
           + +E ++HRIGRTGRAG  G A+T+  +++   +     L+E +   +  +    +S LN
Sbjct: 296 HDSEIHVHRIGRTGRAGSKGMAYTIFDEKEAYQV----ALLEDRFGMITPEALPPMSVLN 351

Query: 380 -----PPLEKIDI 387
                PP+E I I
Sbjct: 352 ESPMMPPMECIRI 364


>gi|313234298|emb|CBY10365.1| unnamed protein product [Oikopleura dioica]
          Length = 408

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 138/384 (35%), Positives = 224/384 (58%), Gaps = 19/384 (4%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM--- 72
           + DAGY  PTPIQ + IP+ +Q  D+ G+A+TG+GKT +F++P+L  ++     +R+   
Sbjct: 17  ISDAGYKDPTPIQRQAIPIGMQNRDIIGVAETGSGKTLAFLVPLLVWIDSLPRNIRVEDA 76

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +IL PTRELA Q+ +   K+G    +    +IGG   E Q  KL  G +++I T
Sbjct: 77  DKGPYAMILAPTRELATQIEEEVVKFGSPLGIRSVAVIGGASREEQGLKLRMGCEIVIAT 136

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGR++D      L+++    +V+DEADRM+DMGF P +Q I S +PF RQT++F+ATM  
Sbjct: 137 PGRLIDVIENRYLVLSQCTYIVLDEADRMIDMGFEPEVQKILSHMPF-RQTVMFTATMPP 195

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
            ++++++ F++ P  + + +    A+ I +  F     Q +KK   +  +L+ ++ ++ G
Sbjct: 196 PVERIAKTFMRRPCTVYIGSVGKAADRIVQKAFFVPDGQKAKK---MISILEDENCLEQG 252

Query: 249 --IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+F NQKK    L   LEK G+   ++HG   Q  R   L+  K G   ++VA+D+A 
Sbjct: 253 PVIVFVNQKKGCDVLARQLEKYGYDAISLHGGKGQDQRDYALACIKNGEKNVLVATDVAG 312

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RG+DI DV  + N+D+    E+Y HRIGRTGRAG+ GKA T + ++D  +   + +++  
Sbjct: 313 RGIDIKDVSLILNYDMAKNIEDYTHRIGRTGRAGKSGKAVTFLTQDDSHNFYDLRQML-- 370

Query: 367 KVDWLNGDLSSLNPPLEKIDIAQH 390
               +  + SS  P L++   AQ 
Sbjct: 371 ----IESECSSCPPELDRHPEAQQ 390


>gi|39939200|ref|NP_950966.1| superfamily II DNA/RNA helicase [Onion yellows phytoplasma OY-M]
 gi|39722309|dbj|BAD04799.1| superfamily II DNA and RNA helicase [Onion yellows phytoplasma
           OY-M]
          Length = 552

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 135/371 (36%), Positives = 227/371 (61%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L +  +   A+ +  ++  TPIQ   IP +++ HDV G AQTGTGKT +F +P   I
Sbjct: 5   FEQLPILEQTKKALKELNFIDATPIQALVIPEIIKGHDVIGQAQTGTGKTFAFGIP---I 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           +EK   +++  ++LIL PTREL  QV +  +K  + Y  + +A++ GG  +  Q + LE 
Sbjct: 62  IEKIEPKIQKTQSLILCPTRELTLQVYEELKKLLRFYQEIRIAVVYGGESYTKQFRALEA 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR +DH  RGK+ ++ ++IL +DEAD ML MGF   ++ I   +P  RQT+
Sbjct: 122 KPHLIIATPGRAIDHLERGKIDLSALKILTLDEADEMLKMGFQEALETILKKIPEERQTV 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++K++  + ++ K ++V   +     IE  +     +   K  LL +LL  
Sbjct: 182 LFSATLPPFIKKIASKYQKDTKILQVPVKNIAVNAIEQNYF--LVKEVDKAKLLVRLLDL 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + I+F N KK+V  +   L+ +GF   A+HG++ Q  R  +++NF++G I++++A
Sbjct: 240 KKDY-SAILFANTKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V N+D+P+  E Y+HRIGRTGRAG+ G A++L++   +  +  +E
Sbjct: 299 TDVAARGLDISDIKMVINYDLPHEDEVYVHRIGRTGRAGKKGLAYSLISPRKVSQLKKLE 358

Query: 362 KLIEKKVDWLN 372
             +++K+  L+
Sbjct: 359 YYLKEKITLLD 369


>gi|325859866|ref|ZP_08172996.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
 gi|327312944|ref|YP_004328381.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
 gi|325482792|gb|EGC85795.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
 gi|326946277|gb|AEA22162.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
          Length = 628

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 137/377 (36%), Positives = 229/377 (60%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+S ++  A+ + G+  P P+Q + IP +L  R+DV  +AQTGTGKTA+F LP+L 
Sbjct: 4   FEELGVSEEIRRAISELGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++ G    +  + ++L PTREL  Q+AD+ + +GK   +L +A + GG   E Q  +L 
Sbjct: 64  RIDTGS---KDTQAVVLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGASIETQIHQLR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGR++D  +RGK  ++ +  +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 121 HGVQIIVATPGRLIDLMHRGKARLDKVSNVVLDEADEMLNMGFQESITEILTGVPEDRNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ ++++V++ +L + K I V + +  AE + H +    A+   K   L++L+ 
Sbjct: 181 LLFSATMSRDVERVAKGYLHDYKEIVVGSRNEGAENVNHIYYMVNAR--DKYLALKRLVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   I+FC  K     +   L K G++  ++HG++ Q+ R   +  F+    Q++V
Sbjct: 239 FYPKI-YAIVFCRTKVETQEIADKLIKDGYNAESLHGDLSQQQRDLTMQKFRSHLTQILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  ENY HR GRTGRAG+ G + +++   +   +  I
Sbjct: 298 ATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKHKVRNI 357

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ I K  ++++G L +
Sbjct: 358 EREIGK--EFVDGTLPA 372


>gi|308271521|emb|CBX28129.1| ATP-dependent RNA helicase rhlB [uncultured Desulfobacterium sp.]
          Length = 530

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 141/378 (37%), Positives = 218/378 (57%), Gaps = 8/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  + P+V+  + DAG+   TPIQ + +PL L   DV G AQTGTGKTA+F+  + + 
Sbjct: 36  FDEFKIPPEVLMGLKDAGFTLCTPIQARALPLSLAGQDVAGQAQTGTGKTAAFLTTIASR 95

Query: 63  LEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +     RV R+P  LI+ PTRELA Q+ +  E   ++  LT+  +IGGI ++ Q   L +
Sbjct: 96  ILSLENRVPRLPSALIVAPTRELAQQIHEEAEVLFRHTGLTLMQVIGGIDYQKQADMLRK 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTRQ 179
           G DV+ICTPGRI+D+F +G      I+I+VIDEADR+LD+GF   ++ I   +P    RQ
Sbjct: 156 GVDVVICTPGRIIDYFKQGVFKTEGIKIIVIDEADRLLDLGFSKDMRYILQKLPNYSKRQ 215

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           ++LFSAT++  + +++  ++  P+ I V       E I       Y    +    L   L
Sbjct: 216 SMLFSATLSHRVMELTYEYMNLPEFISVTPEDVVVEGINQIL---YHVSKESKLSLLLGL 272

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++     +IF N K +V  L   L+  G+    I G++ Q  R  ++  +K+G I+++
Sbjct: 273 LKREKWSRVLIFANTKSSVERLTGKLKGNGYPAEGITGDLPQSKRFSLMERYKKGNIKIL 332

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RG+ + D+ HV N+D+PN  E Y+HRIGRT RAG+ G A  L   E + +++ 
Sbjct: 333 VATDVASRGIHVEDISHVINYDLPNDGEIYVHRIGRTARAGKEGSAICLSCDEFVLNLEN 392

Query: 360 IEKLIEKK--VDWLNGDL 375
           IE  I  K  V+W   D 
Sbjct: 393 IENKIGYKIPVEWAEDDW 410


>gi|308497408|ref|XP_003110891.1| CRE-DDX-23 protein [Caenorhabditis remanei]
 gi|308242771|gb|EFO86723.1| CRE-DDX-23 protein [Caenorhabditis remanei]
          Length = 766

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 152/446 (34%), Positives = 233/446 (52%), Gaps = 49/446 (10%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + G   +V  AV + GY++PTPIQ + IP+ LQ  DV G+A+TG+GKTA+F+LP+L 
Sbjct: 327 NWEEAGFPSEVYQAVKEIGYMEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLV 386

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +E+   R   P  +I+ PTRELA Q+ +   K+GK  ++    +IGG   E Q
Sbjct: 387 WITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLDIKTVSVIGGASREEQ 446

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL  G +V+I TPGR+LD      LL+N    +++DEADRMLDMGF P +Q +   +P
Sbjct: 447 GMKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYLP 506

Query: 176 FT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
            +                         RQT++F+ATM+  +++++  +L+ P  + + + 
Sbjct: 507 ASNMKKDTDEFDNEEALMKGFQTRQKYRQTVMFTATMSPAIERLARQYLRRPAVVHIGSA 566

Query: 211 SSTAETIEH-CFVATY-------AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLC 262
               E +E  CF A +           KK  L+  L+   D  +  IIF NQK+    L 
Sbjct: 567 GKPTERVEQVCFFAYFIFIVYMVTSERKKKKLIDILMVETD--RPIIIFVNQKRGADVLA 624

Query: 263 HSLEKQG--FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNF 320
             L      F    +HG   Q +R   L + K G  +++VA+D+A RG+DI DV  V N+
Sbjct: 625 KGLVSVNPEFRASVLHGGKGQEAREYALQSLKSGESKILVATDVAGRGIDIKDVALVINY 684

Query: 321 DVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNP 380
           D+    E+Y HRIGRTGRAG+HGKA T + ++D      +++++      L   +SS  P
Sbjct: 685 DMAKTIEDYTHRIGRTGRAGKHGKAITFLTQDDTAVFYDLKQVL------LESPVSSCPP 738

Query: 381 PLEKIDIAQHNHARKNNPIPQKSTGF 406
            L   + AQ    +  +   Q  T F
Sbjct: 739 ELANHEAAQGKPGQYTSKKRQDETLF 764


>gi|212634502|ref|YP_002311027.1| DEAD box helicase [Shewanella piezotolerans WP3]
 gi|212555986|gb|ACJ28440.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 440

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 143/366 (39%), Positives = 218/366 (59%), Gaps = 12/366 (3%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FADLGL P+++ A LDA  Y  PT IQ  TIP V+   DV G A TG+GKTA+F LP++ 
Sbjct: 24  FADLGLIPELL-ATLDALAYQSPTAIQQSTIPAVIAGSDVLGGAITGSGKTAAFALPIIQ 82

Query: 62  ILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQN 116
           +L K   + R      +LIL PTRELA QVAD+F +Y +N   NL V  + GG+   +Q 
Sbjct: 83  LLAKSAKQTRQSNYVSSLILVPTRELAQQVADSFMRYAQNIKPNLKVLAVYGGVSTNSQM 142

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  GAD+L+ TPGR+LD  +   + ++ +  LV+DEADRML +GF   +  +   +P 
Sbjct: 143 QSLRGGADILVATPGRLLDLMSSNAVKLDKVSSLVLDEADRMLSLGFTDELAALLEKLPA 202

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +QTLLFSAT  +E+  ++++ L NP  +EV   S    T+    +      ++K  LL 
Sbjct: 203 KKQTLLFSATFPEEVSLLTQSLLNNP--VEVQLQSEEKNTLVQRVITV--NRNRKTPLLV 258

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++  D  +  +IF + K     L   L+  G +    H +  Q +R ++L  FK G  
Sbjct: 259 ELIKQND-WQQILIFASAKYTCNRLAQKLDNAGITAEIFHSDKGQGARTRVLDGFKRGET 317

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++A+D+AARG+DI  +  V N+++P    +Y+HRIGR+GRAG  G A +L++ ++ +H
Sbjct: 318 RVLIATDIAARGIDIEKLPIVINYELPRSPADYMHRIGRSGRAGEAGLALSLISHDEYQH 377

Query: 357 IDAIEK 362
              IEK
Sbjct: 378 FKVIEK 383


>gi|254519975|ref|ZP_05132031.1| ATP-dependent RNA helicase DeaD [Clostridium sp. 7_2_43FAA]
 gi|226913724|gb|EEH98925.1| ATP-dependent RNA helicase DeaD [Clostridium sp. 7_2_43FAA]
          Length = 481

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 133/370 (35%), Positives = 227/370 (61%), Gaps = 6/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ LS +++ A+ + G+ KP+ +Q + IP +L + D+   +QTG+GKTASF +P+  +
Sbjct: 6   FENMNLSEEILKALKNLGFEKPSEVQQEVIPYILDKKDLVVKSQTGSGKTASFGIPLCEL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +     +V+    LIL PTRELA QV ++    G+   +  A + G  PF  Q ++L++ 
Sbjct: 66  VNVEENKVK---ALILVPTRELAIQVKEDISNIGRLKKVRCAAIFGKQPFNEQIRELKQR 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR++DH  RG L +N+I+ ++IDEAD+ML+MGFI  I ++   +P ++ T L
Sbjct: 123 VHIVCGTPGRVIDHIERGNLDINDIDFVIIDEADKMLNMGFIDQITDVLDKLPQSKNTAL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  E++ +  N++ NP  + + +     + I   +     +   K  LL+ L    
Sbjct: 183 FSATIPKEIEGLYSNYMNNPTVLNIRSKVFNRDKISEKYFNVDREEKFKY-LLKSLYAFT 241

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D  ++ IIFCN K +V NL   L+K+  SV  +HG++DQ+ R+  + NFK    +++VA+
Sbjct: 242 D--ESAIIFCNTKDSVRNLSSLLKKEKISVKELHGDMDQKDRLATMENFKNKEFKVLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+ I  + +VFN++VP   E+Y+HRIGR+GR  + G A +LV+K + + ++ IE+
Sbjct: 300 DVAARGIHINHITNVFNYEVPIEKESYVHRIGRSGRGDKKGLAISLVSKGERRFLNEIEE 359

Query: 363 LIEKKVDWLN 372
            I   ++  N
Sbjct: 360 YINYSIEEAN 369


>gi|269968536|ref|ZP_06182542.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|269826871|gb|EEZ81199.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 372

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 148/370 (40%), Positives = 219/370 (59%), Gaps = 19/370 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL P +V  +    Y +PTPIQ ++IP +L+  D+ G A TG+GKTA+F LP+L  
Sbjct: 10  FADLGLIPTLVERLEALEYSQPTPIQSRSIPDILEGKDIIGGANTGSGKTAAFSLPILQK 69

Query: 63  L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-----TVALLIGGIPFE 113
           +    E    R      LIL PTRELA+QVA N + Y  +Y+L     TVA+  GG+   
Sbjct: 70  IVQQDESNNRRGNFVSHLILVPTRELASQVAYNVKSY--SYHLRDKIKTVAVF-GGVSVN 126

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  G D+++ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  I +L
Sbjct: 127 PQMLALRGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILAL 186

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKC 232
           +P  +QTLLFSAT  D++  +++  L++P  +EV   S+ A T ++  F     +   K 
Sbjct: 187 LPEKKQTLLFSATFPDKVTTLAQQLLRDP--VEVQLQSAEASTLVQRVFSVNKGE---KT 241

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           A+L  L++ Q   +  +IF N K    +L   L K+G +    HG+  Q +R ++L  FK
Sbjct: 242 AVLAHLIK-QHQWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFK 300

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G IQ+++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G   +L+  +
Sbjct: 301 SGEIQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYD 360

Query: 353 DIKHIDAIEK 362
           D  H   IEK
Sbjct: 361 DYHHFKVIEK 370


>gi|259146813|emb|CAY80069.1| Rrp3p [Saccharomyces cerevisiae EC1118]
          Length = 501

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 149/378 (39%), Positives = 219/378 (57%), Gaps = 28/378 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L P+++ A  +  Y KPTPIQ K IP  L+ HD+ G+AQTG+GKTA+F +P+L  
Sbjct: 83  FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 142

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +         IL PTRELA Q+ + F+  G    +    ++GG+    Q + L R 
Sbjct: 143 LWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRK 199

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQT 180
             ++I TPGR++DH    K   +  ++ LV+DEADR+LDM F P +  I  ++P   R T
Sbjct: 200 PHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTT 259

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-------TYAQYSKKCA 233
            LFSATMT ++ K+    L NP +  V+    T +T+    +        TY  Y     
Sbjct: 260 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIY----- 314

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           LL + +      K  IIF   K N   +  LC+ LE   FS  A+HG+++Q  RM  L  
Sbjct: 315 LLNEFIG-----KTMIIFTRTKANAERLSGLCNLLE---FSATALHGDLNQNQRMGALDL 366

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV+
Sbjct: 367 FKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 426

Query: 351 KEDIKHIDAIEKLIEKKV 368
           + D++ I  IE+++ KK+
Sbjct: 427 QYDLELILRIEEVLGKKL 444


>gi|114643643|ref|XP_001153944.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
          Length = 443

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 139/359 (38%), Positives = 216/359 (60%), Gaps = 8/359 (2%)

Query: 12  VVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV 70
           V+C   D  G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L  L +   R+
Sbjct: 22  VLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRL 81

Query: 71  RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130
                L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +   ++I TP
Sbjct: 82  F---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATP 138

Query: 131 GRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           GR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T LFSATMT 
Sbjct: 139 GRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTK 198

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
           ++QK+    L+NP +  V++   T E ++  ++   +++  K   L  +L ++    + +
Sbjct: 199 KVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDTYLVYIL-NELAGNSFM 255

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++A+D+A+RGL
Sbjct: 256 IFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGL 315

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           DIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    IE LI KK+
Sbjct: 316 DIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKL 374


>gi|305667304|ref|YP_003863591.1| DEAD box family ATP-dependent RNA helicase [Maribacter sp.
           HTCC2170]
 gi|88709351|gb|EAR01584.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Maribacter sp. HTCC2170]
          Length = 603

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 224/367 (61%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61
           F  LGL   ++ AV D G+  P+ +Q K IP++L+   D+  +AQTGTGKTA+F  P++ 
Sbjct: 4   FEALGLQESLLNAVADMGFETPSEVQEKAIPILLEDETDLVALAQTGTGKTAAFGFPLI- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120
             +K  +  R  + LIL PTREL  Q+ +  + Y K   ++ V  + GG     Q ++++
Sbjct: 63  --QKIDSESRTTQGLILSPTRELCLQITNELKLYSKYEKSINVVAIYGGASITEQARQIK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +++ TPGR+ D  +RG + +  I+  ++DEAD ML+MGF   I++I S  P  + T
Sbjct: 121 RGAQIVVATPGRMKDMISRGLVNITKIDYCILDEADEMLNMGFFEDIKDILSNTPDEKST 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  +++ F+ +PK I V   +S A T++H +     +   +   L++L  
Sbjct: 181 WLFSATMPREVSVIAKKFMHSPKEITVGDKNSGATTVQHEYYVVGGR--DRYPALKRLAD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   + + ++FC  K++   +   L + G++  A+HG++ Q  R  ++++F++  IQ++V
Sbjct: 239 TNPDIFS-VVFCRTKRDTQRVAEKLIEDGYNAGALHGDLSQNQRDLVMNSFRKKQIQMLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV N+ +P+  E Y HR GRTGRAG+ G +  +V + +++ I AI
Sbjct: 298 ATDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIVTRSEMRKIKAI 357

Query: 361 EKLIEKK 367
           E  I++K
Sbjct: 358 ENKIKQK 364


>gi|153825787|ref|ZP_01978454.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-2]
 gi|254291477|ref|ZP_04962269.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae AM-19226]
 gi|149740510|gb|EDM54625.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-2]
 gi|150422667|gb|EDN14622.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae AM-19226]
          Length = 460

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 142/368 (38%), Positives = 225/368 (61%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P+++  +   G+   TPIQ +++P +L+  DV G  +TG+GKTA+F L +L+ 
Sbjct: 6   FAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+    L+L PTRELA QVA +    G+  +N+ V  L GG+P   Q   LE 
Sbjct: 66  LNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH ++ ++ ++ +  LV+DEADRML+MGF   ++ I +  P  RQTL
Sbjct: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++++  +N   I+V     T+ +I   F       ++  AL   LL  
Sbjct: 183 LFSATYPASIEQIAQSVTRNALMIKVEATHDTS-SIRQYFYKVEGSAARDEALETLLLHH 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q T  + ++FCN K+ V N+  +L + GFSV  +HG+++QR R + L  F   +I ++VA
Sbjct: 242 QPT--SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFN+D+    E ++HRIGRTGRAG  G AF+  +  +   +  I+
Sbjct: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359

Query: 362 KLIEKKVD 369
           + ++  ++
Sbjct: 360 EYMDIAIE 367


>gi|332669674|ref|YP_004452682.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi
           ATCC 484]
 gi|332338712|gb|AEE45295.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484]
          Length = 590

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 135/375 (36%), Positives = 214/375 (57%), Gaps = 18/375 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  + P++V A+ DAG   P PIQ  T+P+ L RHD+ G A+TGTGKT  F +P+L  
Sbjct: 48  FADFDVRPEIVQALADAGISHPFPIQAMTLPVALSRHDIIGQAKTGTGKTLGFGVPLLNA 107

Query: 63  L----EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    E G   +  P   + L++ PTRELA QVA +        ++ V  + GG  +E Q
Sbjct: 108 VVAPGEDGYDALPAPGKPQALVVVPTRELAVQVAGDLATASARRSVRVVQVYGGRAYEPQ 167

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L +G DV++ TPGR++D   +  L +  +  +V+DEAD MLD+GF+P ++ + +  P
Sbjct: 168 IDALNKGVDVVVGTPGRMIDLLKQRHLDLTRVRTVVLDEADEMLDLGFLPDVETLLAATP 227

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST-AETIEHCFVATYAQYS-KKCA 233
            +R T+LFSATM   +  ++  ++  P  I    P    ++T+++     Y  ++  K  
Sbjct: 228 ASRHTMLFSATMPGAVVAMARRYMTQPTHIRAADPDDDGSQTVKNIKQVVYRAHALDKVE 287

Query: 234 LLQQLLQSQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           LL ++LQ+     NG    I+F   K+    +   L ++GF+  A+HG++ Q +R + L 
Sbjct: 288 LLARMLQA-----NGRGLTIVFARTKRTAAKVADELVERGFAAGALHGDLGQGAREQALR 342

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+ G + ++VA+D+AARG+D+ DV HV N+  P   + Y+HR GRTGRAG  G A T V
Sbjct: 343 AFRHGKVDVLVATDVAARGIDVEDVTHVVNYQCPEDEKTYLHRTGRTGRAGNKGTAVTFV 402

Query: 350 AKEDIKHIDAIEKLI 364
             +D+     I+K +
Sbjct: 403 DWDDMPRWSLIDKAL 417


>gi|321262460|ref|XP_003195949.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
 gi|317462423|gb|ADV24162.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
          Length = 484

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 143/376 (38%), Positives = 221/376 (58%), Gaps = 13/376 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+SP++  A    G+ KP+ IQ + IP  L+  D+ G+AQTG+GKTA+F LP+L  
Sbjct: 40  FADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQT 99

Query: 63  LEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L +       P+    L+L PTRELA Q++      G    +  A+L+GG+   +Q+  L
Sbjct: 100 LWEN------PQPFFALVLAPTRELAYQISQQITSLGSGIGVRTAVLVGGMDMMSQSIAL 153

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   V++ TPGR++DH    K   + +++ LV+DEADR+LD+ F P I  +  ++P  R
Sbjct: 154 SKRPHVIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKVLKVIPKER 213

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            T LFSATMT ++ K+    L  P R+EV++  ST  T+   ++    + +K   LL   
Sbjct: 214 NTYLFSATMTTKVAKLQRASLNKPVRVEVSSKYSTVSTLLQHYLLLPLK-NKDSYLL--Y 270

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L ++ +  + IIF     +   L   L + GF    +HG + Q  R+  L+ FK G   +
Sbjct: 271 LANELSSSSMIIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGRSI 330

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RGLDIP V  V N+D+P  +++Y+HR+GRT RAGR GK+ TLV + D++ + 
Sbjct: 331 LVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEILQ 390

Query: 359 AIEKLIEKKVDWLNGD 374
            IE  I KK+   + D
Sbjct: 391 RIESHIGKKMTSFDVD 406


>gi|164661763|ref|XP_001732004.1| hypothetical protein MGL_1272 [Malassezia globosa CBS 7966]
 gi|159105905|gb|EDP44790.1| hypothetical protein MGL_1272 [Malassezia globosa CBS 7966]
          Length = 470

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 145/375 (38%), Positives = 213/375 (56%), Gaps = 13/375 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLG+   +  A     +  PT IQ + IP  LQ  DV G+AQTG+GKTA+F +P+L  
Sbjct: 27  FSDLGVIEPICEACEKLHFSAPTDIQAQAIPHALQGRDVIGLAQTGSGKTAAFSIPILQG 86

Query: 63  LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L         PR L   IL PTREL+ Q++   E  G    +  A ++GG+    Q+  L
Sbjct: 87  LWDD------PRPLFACILAPTRELSYQISQQIEALGATIGVRCATIVGGMDMMTQSIAL 140

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   V++ TPGR+ DH    K   + ++  LV+DEADR+LD+ F P I  +   +P  R
Sbjct: 141 SKRPHVIVATPGRLQDHLENTKGFSLRSLRYLVMDEADRLLDLDFGPIIDKLLQNIPKER 200

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +T+LFSATMT ++ K+    L+NP RIE+ T  ST  T++  ++  +  ++ K   L  L
Sbjct: 201 RTMLFSATMTTKVAKLQRASLRNPVRIEIGTKYSTVSTLQQYYL--FMPFAHKDTYLVHL 258

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q    + I+F     +   L   L   GFS   +HG + Q +R+  L+ FK G   +
Sbjct: 259 ANEQ-VGHSIIVFTRTVHDAQRLAVLLRLLGFSAIPLHGQLSQTARLGALNKFKAGGRSI 317

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MV +D+AARGLDIP V  V NFD+P  +++YIHR+GRT RAGR G++ TLV + D++ + 
Sbjct: 318 MVCTDVAARGLDIPAVDLVVNFDIPTHSKDYIHRVGRTARAGRQGRSVTLVTQYDVELLQ 377

Query: 359 AIEKLIEKKVDWLNG 373
            IE  I K++D   G
Sbjct: 378 RIEAAIGKRLDEFPG 392


>gi|169844029|ref|XP_001828736.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
 gi|116510107|gb|EAU93002.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
          Length = 754

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 146/361 (40%), Positives = 214/361 (59%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  ++ A+   G+ KPTPIQ  TIP+ L   D+ G A TG+GKTA+F++PML  
Sbjct: 176 FLQMNLSRPILKAISSLGFTKPTPIQASTIPVALLGKDIVGNAVTGSGKTAAFMIPMLER 235

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   EKG+ R    R LIL PTRELA Q  +  ++ G + ++   LL+GG+  +AQ   L
Sbjct: 236 LLYREKGK-RAAATRCLILLPTRELAVQCYEVGKRLGAHTDIQFCLLVGGLSLKAQEAAL 294

Query: 120 ERGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +  DV++ TPGR++DH  N     +++++ILV+DEADRML  GF   +  I    P +R
Sbjct: 295 RQRPDVVLATPGRLIDHVRNSVGFNLDSLDILVLDEADRMLSEGFADELTEIIKACPKSR 354

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATMTD + ++ +  L  P R+ V+   STA  +   FV    + S + A+L  L
Sbjct: 355 QTMLFSATMTDSVDELIKMSLNKPVRLFVDPKRSTARGLIQEFVRIRKE-SDRPAMLVAL 413

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            + Q      IIF   KK    +       G     +HG++ Q  R++ L +F+EG++  
Sbjct: 414 CK-QTYKHKVIIFVRSKKLAHQMRIVFSLLGMKCAELHGDLSQEQRLQALQSFREGSVDY 472

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+DLA+RGLDI  V  V N+D+P +   Y+HR+GRT RAGR GK+ TLV + D K + 
Sbjct: 473 LMATDLASRGLDIKGVETVVNYDMPGQMAQYLHRVGRTARAGRKGKSVTLVGEADRKLLK 532

Query: 359 A 359
           A
Sbjct: 533 A 533


>gi|317504343|ref|ZP_07962329.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae
           DSM 15606]
 gi|315664534|gb|EFV04215.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae
           DSM 15606]
          Length = 625

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 139/375 (37%), Positives = 228/375 (60%), Gaps = 10/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG++  +  A+ + G+  P P+Q + IP +L  ++DV  +AQTGTGKTA+F LP+L 
Sbjct: 4   FEELGVNENIRRAIEELGFEHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAFGLPLL- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
             +K  A+ R  + ++L PTREL  Q+AD+ + + K  + + +  + GG     Q + ++
Sbjct: 63  --QKVNAQDRATQAIVLSPTRELCVQIADDLKDFSKYIDGMHIVPVYGGADIRPQIRAIK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  V++ TPGR++D  NRG + +  +  +V+DEAD ML+MGF   I  I   +P  R T
Sbjct: 121 HGTQVIVATPGRLVDLINRGVMELEKVNNIVLDEADEMLNMGFSDSINAIFEQLPEDRNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E++KV++++L + K I V + +  AE + H +   Y  +SK   L  + + 
Sbjct: 181 LLFSATMSREVEKVAKSYLHDYKEIVVGSRNEGAEHVNHIY---YLVHSKDKYLALKRIV 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIFC  K     +   L K G++  A+HG++ Q+ R   +  F++ T+QL+V
Sbjct: 238 DFHPRIFAIIFCRTKAETQEVADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHTVQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G + +++  ++   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHIKEKWKVRQI 357

Query: 361 EKLIEKKVDWLNGDL 375
           EK I K  D+++G+L
Sbjct: 358 EKQIGK--DFIDGEL 370


>gi|329962827|ref|ZP_08300712.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
 gi|328529384|gb|EGF56297.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
          Length = 428

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 223/371 (60%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+ +V+ A+    + + TPIQ K+IP++L+  D+  +AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELQLNEQVLEALDAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             L +GR        +I+ PTRELA Q+    E +     ++   + GG   I FE Q K
Sbjct: 61  DKLSEGRHPEDSINCIIMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKHLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++ N L NP  +++       + ++  +V    Q   K  +++ 
Sbjct: 181 RQTIMFSATMPAKIQQLANNILNNPAEVKLAVSKPADKIVQAAYVCYENQ---KLGIIRS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   Q T +  IIF + K  V  +  +L++   +V  +H +++Q  R +++  FK G I 
Sbjct: 238 LFAEQ-TPERVIIFASSKIKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T +++++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQSNF 356

Query: 358 DAIEKLIEKKV 368
             IE  +EK +
Sbjct: 357 KNIENFLEKTI 367


>gi|323348235|gb|EGA82484.1| Rrp3p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 543

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 149/378 (39%), Positives = 219/378 (57%), Gaps = 28/378 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L P+++ A  +  Y KPTPIQ K IP  L+ HD+ G+AQTG+GKTA+F +P+L  
Sbjct: 125 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 184

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +         IL PTRELA Q+ + F+  G    +    ++GG+    Q + L R 
Sbjct: 185 LWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRK 241

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQT 180
             ++I TPGR++DH    K   +  ++ LV+DEADR+LDM F P +  I  ++P   R T
Sbjct: 242 PHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTT 301

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-------TYAQYSKKCA 233
            LFSATMT ++ K+    L NP +  V+    T +T+    +        TY  Y     
Sbjct: 302 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIY----- 356

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           LL + +      K  IIF   K N   +  LC+ LE   FS  A+HG+++Q  RM  L  
Sbjct: 357 LLNEFIG-----KTMIIFTRTKANAERLSGLCNLLE---FSATALHGDLNQNQRMGALDL 408

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV+
Sbjct: 409 FKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 468

Query: 351 KEDIKHIDAIEKLIEKKV 368
           + D++ I  IE+++ KK+
Sbjct: 469 QYDLELILRIEEVLGKKL 486


>gi|90413176|ref|ZP_01221172.1| putative ATP-dependent RNA helicase SrmB [Photobacterium profundum
           3TCK]
 gi|90325867|gb|EAS42319.1| putative ATP-dependent RNA helicase SrmB [Photobacterium profundum
           3TCK]
          Length = 419

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 141/377 (37%), Positives = 220/377 (58%), Gaps = 9/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF++L L   ++ A+ + GY +PT +Q + IP  L   DV   A TGTGKTA+F+LPM+ 
Sbjct: 3   DFSELELDSALLNAIEEIGYTRPTEVQAQAIPHALDGRDVLASAPTGTGKTAAFLLPMIQ 62

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +    R LIL PTRELA Q+AD+     KN +L +  + GGI ++   + L 
Sbjct: 63  HLLDFPRKKPGPARVLILTPTRELAIQIADHARALAKNTHLKIFTITGGISYDDHAELLG 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR++++    +     IE L++DEADRMLDMGF   +  I     + RQ+
Sbjct: 123 KTQDIVVATPGRLMEYVESERFDCRAIECLILDEADRMLDMGFTKIVDRINHECRWRRQS 182

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT+  + +++ SE  L+ P  +EVN+ PS       H           K ALL+Q+
Sbjct: 183 LLFSATLEGKGVREFSETILKEP--VEVNSAPSRRERKKIHQLYLRCDDMGHKLALLEQI 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ Q   +  I+F   +  +  L   L         I G + Q SR   ++ F++G + +
Sbjct: 241 LKHQ--AERSIVFVKTRDRLATLRDQLASMNVKCSWIQGEMAQLSRNNAIARFRDGDVNI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+PD+ HV NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D   I+
Sbjct: 299 LIATDVAARGIDLPDISHVINFDMPRTADVYLHRIGRTARAGKKGIAISLVEAHDQAMIE 358

Query: 359 AIEKLIEKKV--DWLNG 373
            + + +E++V   ++NG
Sbjct: 359 RVSRYMEEEVPERFING 375


>gi|41054055|ref|NP_956176.1| probable ATP-dependent RNA helicase DDX23 [Danio rerio]
 gi|38014376|gb|AAH60524.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Danio rerio]
          Length = 807

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 148/421 (35%), Positives = 226/421 (53%), Gaps = 41/421 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ +  L P ++  +   GY  PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 379 NWKEYSLPPHILEVIEKCGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 438

Query: 62  IL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +      ++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q
Sbjct: 439 WITTLPKIDRIEDSDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 498

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 499 GFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEYIP 558

Query: 176 FT--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNT 209
            T                          RQT++F+ATM   +++++ ++L+ P  + + +
Sbjct: 559 VTNQKPDTDDAEDPEKMMQNFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 618

Query: 210 PSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269
                E +E   V   ++  K+  LL+ L    +     IIF NQKK    L  SLEK G
Sbjct: 619 AGKPHERVEQK-VILMSEGEKRKKLLEVLASGFEPPI--IIFVNQKKGCDVLAKSLEKMG 675

Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329
           ++ C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+Y
Sbjct: 676 YNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVLNYDMAKNIEDY 735

Query: 330 IHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
           IHRIGRTGRAG+ G A T + KED      +++ I      L   +S+  P L     AQ
Sbjct: 736 IHRIGRTGRAGKSGVAMTFLTKEDSSVFYDLKQAI------LESPVSTCPPELANHPDAQ 789

Query: 390 H 390
           H
Sbjct: 790 H 790


>gi|325268230|ref|ZP_08134863.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           multiformis DSM 16608]
 gi|324989372|gb|EGC21322.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           multiformis DSM 16608]
          Length = 668

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 137/377 (36%), Positives = 229/377 (60%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+S ++  A+ + G+  P P+Q + IP +L  R+DV  +AQTGTGKTA+F LP+L 
Sbjct: 39  FEELGVSEEIRRAISELGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLPLLQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++ G    +  + ++L PTREL  Q+AD+ + +GK   +L +A + GG   E Q  +L 
Sbjct: 99  RIDTGS---KDTQAVVLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGASIETQIHQLR 155

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGR++D  +RGK  ++ +  +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 156 HGVQIIVATPGRLIDLMHRGKARLDKVTNVVLDEADEMLNMGFQESITEILTGVPEDRNT 215

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ ++++V++ +L + K I V + +  AE + H +    A+   K   L++L+ 
Sbjct: 216 LLFSATMSRDVERVAKGYLHDYKEIVVGSRNEGAENVNHIYYMVNAR--DKYLALKRLVD 273

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   I+FC  K     +   L K G++  ++HG++ Q+ R   +  F+    Q++V
Sbjct: 274 FYPKI-YAIVFCRTKVETQEIADKLIKDGYNAESLHGDLSQQQRDLTMQKFRSHLTQILV 332

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  ENY HR GRTGRAG+ G + +++   +   +  I
Sbjct: 333 ATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKHKVRNI 392

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ I K  ++++G L +
Sbjct: 393 EREIGK--EFVDGTLPT 407


>gi|308446500|ref|XP_003087194.1| hypothetical protein CRE_11658 [Caenorhabditis remanei]
 gi|308260015|gb|EFP03968.1| hypothetical protein CRE_11658 [Caenorhabditis remanei]
          Length = 526

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 142/376 (37%), Positives = 222/376 (59%), Gaps = 13/376 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  L   +  A+   G+  PTP+Q  +IP  L+  D+   +QTG+GKTA+F+LP L  
Sbjct: 5   FAEFSLDESLQKALESLGFTTPTPVQELSIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64

Query: 63  LE--------KGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPF 112
           L         K R + V  P  L++ PTRELA QV  +   + ++   + VA ++GG+PF
Sbjct: 65  LAGQDTFVPFKDRMKAVTQPNILVISPTRELAQQVCQDAIAFVRHMKGVRVAAIMGGMPF 124

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q ++L +GA V++ TPGR+LD  NR ++ ++ ++ L++DEADRMLD+GF   ++ I+ 
Sbjct: 125 GKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDLVDALIVDEADRMLDLGFSEDLEAISD 183

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L    +QTL+FSAT    +  ++E  +  P+RI + T  ST   I      T   +  K 
Sbjct: 184 LALNRKQTLMFSATFAPRIINLAERMMNEPERIAIETGHSTNTDITQTLHWTDG-FEHKK 242

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL   L  +D +   ++F + +++   L   L + G SV A+HG + Q  R + L + +
Sbjct: 243 KLLTHWLNEED-VDQAVVFASTQEDTDMLAEELAEAGLSVVALHGAMPQTVRNRRLRSIR 301

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR GKA TL    
Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGKAITLATYR 361

Query: 353 DIKHIDAIEKLIEKKV 368
           +   I A+E  +E ++
Sbjct: 362 ERGKIRALEDYLEARL 377


>gi|119470499|ref|ZP_01613202.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7]
 gi|119446200|gb|EAW27477.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7]
          Length = 408

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 140/370 (37%), Positives = 207/370 (55%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++  L  K++ A+   GY KPT IQ + IP  LQ  D+   A TGTGKTA+F++P +
Sbjct: 1   MQFSEFDLDTKLLDAIDKMGYEKPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAI 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R      R LI+ PTRELA Q+ +  E   K  +L + ++ GGI +    +  
Sbjct: 61  QYLLDFPRREPGFARVLIMTPTRELAYQIHEQCELLAKRTHLKIGVVTGGINYGTHKEIF 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+  DVLI TPGR++++         ++E+L+IDEADRMLDMGF   +  I       RQ
Sbjct: 121 EKNNDVLIATPGRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEAKNRRQ 180

Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             LFSAT+  D +++ +E  L +P  +E  +       I H +V     Y  K  LL   
Sbjct: 181 CFLFSATLEGDSVERFAETTLNDPALLEAESSRKEKAKI-HQWVHLADDYHHKLELLVNT 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   D  K  I+F   ++ +  L   L   G     + G + Q  RMK + NF  G  ++
Sbjct: 240 LNGPDVSK-AIVFVKTRERLETLIGELTNNGVKAAWLRGEMPQDKRMKAMENFHSGRTKI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+ D+ HV NFD+P  A+ Y+HRIGRTGRAG+ G A +LV   DI  + 
Sbjct: 299 LIATDVAARGIDVSDISHVINFDMPRTADVYVHRIGRTGRAGKKGIAISLVEAHDIGILY 358

Query: 359 AIEKLIEKKV 368
            +E+ IE+K+
Sbjct: 359 KVERYIEQKL 368


>gi|168235783|ref|ZP_02660841.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168819458|ref|ZP_02831458.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194736572|ref|YP_002114683.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194712074|gb|ACF91295.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197291228|gb|EDY30581.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|205343740|gb|EDZ30504.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320085851|emb|CBY95627.1| ATP-dependent RNA helicase DBP2 [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 457

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 141/355 (39%), Positives = 213/355 (60%), Gaps = 8/355 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L  ++     +   + L+L 
Sbjct: 22  GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF AQ   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQTLLFSAT  D +  +S   
Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPETRQTLLFSATWPDAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            Q P RIE++T  +    IE  F  T A   +K +LLQ LL SQ    + ++FCN KK+ 
Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L   G S  A+HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
           N+++    E ++HRIGRT RAG  G A +  A E+ +  + + ++++ K++WLN 
Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369


>gi|255722942|ref|XP_002546405.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404]
 gi|240130922|gb|EER30484.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404]
          Length = 483

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 148/418 (35%), Positives = 235/418 (56%), Gaps = 24/418 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L P ++ ++ +  + KPTPIQ ++IP  L+  D+ G+AQTG+GKTA+F +P+L  
Sbjct: 70  FKELNLVPDLLESIENMKFTKPTPIQSESIPHALEGKDIIGLAQTGSGKTAAFAIPILQS 129

Query: 63  LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L       + P   L+L PTRELA Q+ + F+  G +  L  + ++GG+    Q + L R
Sbjct: 130 L----WHAQQPYFGLVLAPTRELAFQIKETFDALGSSMGLRSSCIVGGMDMMDQARDLMR 185

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGRI+DH    K   + N++ LV+DEADR+LDM F P +  I  ++P  R T
Sbjct: 186 KPHIIVATPGRIMDHLEHTKGFTLKNLKYLVMDEADRLLDMDFGPALDKILKVIPTKRTT 245

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT++++K+    L NP R+ V++   TA+ +    +     Y  K  +L  LL 
Sbjct: 246 YLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGY--KNTILIHLL- 302

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   K+ I+F     +           GF+   +HG + Q  R+  L+ FK  T  +++
Sbjct: 303 NEFMSKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNTANILI 362

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V N+D+P  ++ YIHR+GRT RAGR GK+ +L+ + D++    I
Sbjct: 363 ATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRI 422

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA--------RKNNPIPQKSTGFDRRK 410
           E ++  K+   +       PP E +D A H H         R+   + +K  G +RR+
Sbjct: 423 ESVLGYKLPKED------KPPKEVLD-ALHIHVDKATAEAIRQTKELHEKRGGNNRRR 473


>gi|160358662|sp|A6ZSX1|RRP3_YEAS7 RecName: Full=ATP-dependent rRNA helicase RRP3; AltName:
           Full=Ribosomal RNA-processing protein 3
 gi|151944009|gb|EDN62302.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789]
 gi|190405848|gb|EDV09115.1| weak RNA-dependent ATPase activity which is not specific for rRNA
           [Saccharomyces cerevisiae RM11-1a]
 gi|256270568|gb|EEU05749.1| Rrp3p [Saccharomyces cerevisiae JAY291]
 gi|323333235|gb|EGA74633.1| Rrp3p [Saccharomyces cerevisiae AWRI796]
          Length = 501

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 149/378 (39%), Positives = 219/378 (57%), Gaps = 28/378 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L P+++ A  +  Y KPTPIQ K IP  L+ HD+ G+AQTG+GKTA+F +P+L  
Sbjct: 83  FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 142

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +         IL PTRELA Q+ + F+  G    +    ++GG+    Q + L R 
Sbjct: 143 LWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRK 199

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQT 180
             ++I TPGR++DH    K   +  ++ LV+DEADR+LDM F P +  I  ++P   R T
Sbjct: 200 PHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTT 259

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-------TYAQYSKKCA 233
            LFSATMT ++ K+    L NP +  V+    T +T+    +        TY  Y     
Sbjct: 260 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIY----- 314

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           LL + +      K  IIF   K N   +  LC+ LE   FS  A+HG+++Q  RM  L  
Sbjct: 315 LLNEFIG-----KTMIIFTRTKANAERLSGLCNLLE---FSATALHGDLNQNQRMGALDL 366

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV+
Sbjct: 367 FKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 426

Query: 351 KEDIKHIDAIEKLIEKKV 368
           + D++ I  IE+++ KK+
Sbjct: 427 QYDLELILRIEEVLGKKL 444


>gi|320539202|ref|ZP_08038873.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
 gi|320030840|gb|EFW12848.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
          Length = 440

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 142/355 (40%), Positives = 211/355 (59%), Gaps = 8/355 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L  +++ A+ D GY +PT IQ + IP  +   DV G A TGTGKTA+F+LP+L  
Sbjct: 6   FSELELDERLIIALHDKGYDRPTAIQAEAIPPAMNGRDVLGSAPTGTGKTAAFLLPVLQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVAD   +   + +L +A + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I++   +  QTL
Sbjct: 126 NQDMVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEIISAETRWRNQTL 185

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQL 238
           LFSAT+  E +   +E  L+ P ++E + PS     + ++  + A   Q+  K ALL  L
Sbjct: 186 LFSATLEGEAIHAFAERILKEPVKVEAD-PSRRERKKILQWYYRADDVQH--KTALLVHL 242

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+  D  K+ +IF  +++ V  L   L + G + C + G + Q  R + +    +G I +
Sbjct: 243 LKQPDVQKS-VIFVRKRERVHELATWLREAGINTCYLEGEMVQAKRNEAVKRMMDGRIDV 301

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +VA+D+AARGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D
Sbjct: 302 LVATDVAARGLDIIDITHVFNFDMPRTADTYLHRIGRTGRAGRKGTAISLVEAHD 356


>gi|113461438|ref|YP_719507.1| ATP-dependent RNA helicase SrmB [Haemophilus somnus 129PT]
 gi|112823481|gb|ABI25570.1| ATP-dependent RNA helicase [Haemophilus somnus 129PT]
          Length = 441

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 141/400 (35%), Positives = 222/400 (55%), Gaps = 10/400 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  L+P+++ A+   GY +PT IQ+  IP +++  DV G A TGTGKTA+F+LP L  
Sbjct: 6   FEDFDLAPQLLKALAQKGYSRPTVIQLDAIPAIMEARDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR L+L PTRELA QVA+  E+  +  +L++A + GG+ ++   +   +
Sbjct: 66  LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLSIATITGGVAYQNHGEVFNK 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +          +EIL+ DEADRML MGF  Y + I +   + RQTL
Sbjct: 126 NQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQYAEEIAAETRWRRQTL 185

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  E L   +   L++P +          + I   +    +    K  LL + ++
Sbjct: 186 LFSATLEGELLVDFASRLLKDPVQFNAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   + GI+F  +++NV  L   L K+G     + G + Q  R K +   K   + ++V
Sbjct: 245 NEQVSR-GIVFVRRRENVRELSEILRKRGIRSTYLEGEMAQTQRTKAIDKLKNDVVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HR+GRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYNADTYLHRVGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPP----LEKIDIAQHNHAR 394
           ++   +  K   + G     NPP    ++ +   Q N A+
Sbjct: 364 KRYTGELLKPRIIEGLEPRTNPPKDGEIKTVSKKQKNRAK 403


>gi|323304679|gb|EGA58441.1| Rrp3p [Saccharomyces cerevisiae FostersB]
          Length = 543

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 149/378 (39%), Positives = 219/378 (57%), Gaps = 28/378 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L P+++ A  +  Y KPTPIQ K IP  L+ HD+ G+AQTG+GKTA+F +P+L  
Sbjct: 125 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 184

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +         IL PTRELA Q+ + F+  G    +    ++GG+    Q + L R 
Sbjct: 185 LWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRK 241

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQT 180
             ++I TPGR++DH    K   +  ++ LV+DEADR+LDM F P +  I  ++P   R T
Sbjct: 242 PHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTT 301

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-------TYAQYSKKCA 233
            LFSATMT ++ K+    L NP +  V+    T +T+    +        TY  Y     
Sbjct: 302 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIY----- 356

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           LL + +      K  IIF   K N   +  LC+ LE   FS  A+HG+++Q  RM  L  
Sbjct: 357 LLNEFIG-----KTMIIFTRTKANAERLSGLCNLLE---FSATALHGDLNQNQRMGALDL 408

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV+
Sbjct: 409 FKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 468

Query: 351 KEDIKHIDAIEKLIEKKV 368
           + D++ I  IE+++ KK+
Sbjct: 469 QYDLELILRIEEVLGKKL 486


>gi|54026546|ref|YP_120788.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
 gi|54018054|dbj|BAD59424.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
          Length = 1148

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 143/371 (38%), Positives = 214/371 (57%), Gaps = 10/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA+LG+  ++V A+ + G  +   IQ  T+PL L   D+ G A+TG GKT  F +P+L  
Sbjct: 37  FAELGVRDEIVRALAEIGIERTFAIQELTLPLALAGEDLIGQARTGMGKTFGFGVPLLHR 96

Query: 61  -TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGK---NYN--LTVALLIGGIPFE 113
               + G   +   PR L++ PTREL  QV D+  + GK   N+   L V  + GG P++
Sbjct: 97  IATADSGTTPLDGTPRALVIVPTRELCIQVTDDLVRAGKYLRNHKGALKVTAIYGGRPYD 156

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           +Q   L  G DV++ TPGR+LD   +  L++  I +LV+DEAD MLD+GF+P I+ I ++
Sbjct: 157 SQIAALREGVDVVVGTPGRLLDLAKQNHLILGKIGVLVLDEADEMLDLGFLPDIERILTM 216

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           VP  RQT+LFSATM   +  ++  FL  P  I    P  +A           A    K  
Sbjct: 217 VPAKRQTMLFSATMPGPIITLARTFLTRPTHIRAEEPHDSAVHDRTAQFVYRAHALDKAE 276

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L+ ++LQ++      +IF   K+    +   L ++GF+V A+HG++ Q  R K L  F++
Sbjct: 277 LIARVLQAEGRGAT-MIFTRTKRTAQKVADDLAERGFAVGAVHGDLGQVQREKALDKFRK 335

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G A TL+  ++
Sbjct: 336 GVIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGVAVTLIDWDE 395

Query: 354 IKHIDAIEKLI 364
           +    AI+  +
Sbjct: 396 LNRWAAIDAAL 406


>gi|323308818|gb|EGA62055.1| Rrp3p [Saccharomyces cerevisiae FostersO]
          Length = 501

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 149/378 (39%), Positives = 219/378 (57%), Gaps = 28/378 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L P+++ A  +  Y KPTPIQ K IP  L+ HD+ G+AQTG+GKTA+F +P+L  
Sbjct: 83  FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 142

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +         IL PTRELA Q+ + F+  G    +    ++GG+    Q + L R 
Sbjct: 143 LWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRK 199

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQT 180
             ++I TPGR++DH    K   +  ++ LV+DEADR+LDM F P +  I  ++P   R T
Sbjct: 200 PHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTT 259

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-------TYAQYSKKCA 233
            LFSATMT ++ K+    L NP +  V+    T +T+    +        TY  Y     
Sbjct: 260 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIY----- 314

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           LL + +      K  IIF   K N   +  LC+ LE   FS  A+HG+++Q  RM  L  
Sbjct: 315 LLNEFIG-----KTMIIFTRTKANAERLSGLCNLLE---FSATALHGDLNQNQRMGALDL 366

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV+
Sbjct: 367 FKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 426

Query: 351 KEDIKHIDAIEKLIEKKV 368
           + D++ I  IE+++ KK+
Sbjct: 427 QYDLELILRIEEVLGKKL 444


>gi|70728428|ref|YP_258177.1| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens Pf-5]
 gi|68342727|gb|AAY90333.1| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens Pf-5]
          Length = 496

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 138/373 (36%), Positives = 221/373 (59%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  L+P+++ A+ D G+   TPIQ + +   L   D  G AQTGTGKTA+F++ ++T 
Sbjct: 107 FHDFKLAPELMHAIQDLGFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLVSIITQ 166

Query: 62  ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L+    + R    PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K 
Sbjct: 167 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKH 226

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           LE R  D+L+ TPGR+LD   RG + ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 227 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 286

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T+++  +++ +  +P  +E+   +  +  +E    A     + K  LL
Sbjct: 287 SERQTLLFSATFTEDVMNLAKQWTTDPAIVEIEAENVASANVEQHIYAVAG--ADKYKLL 344

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 345 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 403

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 404 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 463

Query: 356 HIDAIEKLIEKKV 368
            + +IE L+ +K+
Sbjct: 464 QLPSIEALLGRKI 476


>gi|323354635|gb|EGA86470.1| Rrp3p [Saccharomyces cerevisiae VL3]
          Length = 501

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 149/378 (39%), Positives = 219/378 (57%), Gaps = 28/378 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L P+++ A  +  Y KPTPIQ K IP  L+ HD+ G+AQTG+GKTA+F +P+L  
Sbjct: 83  FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 142

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +         IL PTRELA Q+ + F+  G    +    ++GG+    Q + L R 
Sbjct: 143 LWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRK 199

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQT 180
             ++I TPGR++DH    K   +  ++ LV+DEADR+LDM F P +  I  ++P   R T
Sbjct: 200 PHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTT 259

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-------TYAQYSKKCA 233
            LFSATMT ++ K+    L NP +  V+    T +T+    +        TY  Y     
Sbjct: 260 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIY----- 314

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           LL + +      K  IIF   K N   +  LC+ LE   FS  A+HG+++Q  RM  L  
Sbjct: 315 LLNEFIG-----KTMIIFTRTKANAERLSGLCNLLE---FSATALHGDLNQNQRMGALDL 366

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV+
Sbjct: 367 FKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 426

Query: 351 KEDIKHIDAIEKLIEKKV 368
           + D++ I  IE+++ KK+
Sbjct: 427 QYDLELILRIEEVLGKKL 444


>gi|118444590|ref|YP_878428.1| ATP-dependent RNA helicase [Clostridium novyi NT]
 gi|118135046|gb|ABK62090.1| ATP-dependent RNA helicase [Clostridium novyi NT]
          Length = 371

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 211/364 (57%), Gaps = 6/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF +LG+S  ++  +   G   PTPIQ  +I  +    DV   AQTGTGKT +F+LP   
Sbjct: 3   DFKNLGISKNIIDILSREGIKSPTPIQENSIEFIKMGKDVIAEAQTGTGKTLAFLLP--- 59

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I E         + LI+ PTRELA Q+ +   K  K  ++ +    GG   ++Q KKL+ 
Sbjct: 60  IFENISLESNFVQVLIVTPTRELAIQITEEAMKLKKAKDINILAAYGGKDIQSQLKKLKG 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH NR  + ++ ++ LV+DEAD+ML MGF   ++ I S      QTL
Sbjct: 120 NIQLIIATPGRLLDHLNRSTIKLDKLKTLVLDEADQMLYMGFKNEVEKIISYTSKKHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  +++K++  +++ PK + V     T + I+  FV       K+ AL   L + 
Sbjct: 180 CFSATMNSDVKKLAYRYMKEPKVVSVKAEEVTLKNIQQ-FVVETTDRRKQDALCSVLDED 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              M   IIFC  K+ V NL  +L K+G++   +HG++ Q  R +++  FK    Q ++A
Sbjct: 239 NPFM--AIIFCRTKRRVDNLEEALHKRGYNCDKLHGDLAQAKRERVMKKFKNMDTQYLIA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+++D+P  AE+YIHRIGRTGRAG  GK    +  +D + ++ IE
Sbjct: 297 TDVAARGLDITGVTHVYSYDIPENAESYIHRIGRTGRAGEEGKTCLFIDPKDKRLLETIE 356

Query: 362 KLIE 365
           K I+
Sbjct: 357 KEIK 360


>gi|310779133|ref|YP_003967466.1| DEAD/DEAH box helicase domain protein [Ilyobacter polytropus DSM
           2926]
 gi|309748456|gb|ADO83118.1| DEAD/DEAH box helicase domain protein [Ilyobacter polytropus DSM
           2926]
          Length = 526

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 215/370 (58%), Gaps = 11/370 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60
           +F  LGLS K +  +L+ G+ KP+PIQ  TIP++L    DV G AQTGTGKTA+F LP+L
Sbjct: 6   EFKALGLSEKTLRPLLEKGFEKPSPIQALTIPVLLNGDKDVIGQAQTGTGKTAAFSLPIL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +EK    ++    ++L PTRELA QVA+         NL +A + GG   E Q K+L 
Sbjct: 66  EKIEKSTGSIQ---AIVLAPTRELAVQVAEEMNSLSHGRNLRIAPVYGGQSIEFQIKQLR 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR++D  NR  L ++ I+  ++DEAD ML+MGF+  ++ I       ++ 
Sbjct: 123 RGIDVVVGTPGRVIDLMNRKILKLDKIDYFILDEADEMLNMGFLEDVEMILQNTSKDKRM 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
           L FSATM  E+ +V++  +   + + V     T    +  +  V    ++   C ++   
Sbjct: 183 LFFSATMPKEILRVAKKHMGEHEVLAVKKTELTTNLTDQIYFEVKEKDKFEALCRIMDLE 242

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L        GI+FC  K +V  L   L+ +G+    +HG+I Q  R   L  FKE  I +
Sbjct: 243 LDFY-----GIVFCRTKNDVNVLVGKLQDRGYDSEGLHGDISQNHREITLKRFKEKKINV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+ D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T +   + + I 
Sbjct: 298 LIATDVAARGIDVNDLSHVINYAIPQDPESYVHRIGRTGRAGKEGTAITFITPSEYRKIL 357

Query: 359 AIEKLIEKKV 368
            I+++++ ++
Sbjct: 358 QIQRIVKTEI 367


>gi|301155361|emb|CBW14827.1| ATP-dependent RNA helicase [Haemophilus parainfluenzae T3T1]
          Length = 442

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 138/383 (36%), Positives = 216/383 (56%), Gaps = 6/383 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +  LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP +  
Sbjct: 6   FEEFDLSPELLKALEKKGYTRPTAIQLEAIPAAMEERDVLGSAPTGTGKTAAFLLPAIQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVA+  E+  +  +L +A + GG+ ++   +    
Sbjct: 66  LLDYPRRKPGAPRILILTPTRELAMQVAEQAEELAQFTHLKIATITGGVAYQNHGEVFNS 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +          +E+L+ DEADRML MGF    + I +   + +QTL
Sbjct: 126 NQDIVVATPGRLLQYIKEENFDCRAVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  EL    +E  L +P +I+        + I   +    +    K  LL + ++
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKIDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   + GI+F  ++++V  L  +L K+G     + G++ Q  R   +   K G + ++V
Sbjct: 245 TEKVSR-GIVFVRRREDVRELSETLRKRGIRSTYLEGDMAQTQRNNAIDKLKSGVVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVTHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381
           ++  E+  K   L G      PP
Sbjct: 364 KRYTEELLKARILEGLEPRTKPP 386


>gi|292493472|ref|YP_003528911.1| DEAD/DEAH box helicase [Nitrosococcus halophilus Nc4]
 gi|291582067|gb|ADE16524.1| DEAD/DEAH box helicase domain protein [Nitrosococcus halophilus
           Nc4]
          Length = 504

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 139/366 (37%), Positives = 214/366 (58%), Gaps = 11/366 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F    +S  ++ A+   GY  PT IQ + IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 8   LSFDGFAISAPILQAIKQVGYETPTQIQARAIPHLLAGCDLMGQAQTGTGKTAAFAIPIL 67

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L   R   + P+ L+L PTRELA QVA+ F+ Y +   +  V  + GG     Q ++L
Sbjct: 68  NRLALTR---KEPQALVLVPTRELAIQVAEAFQTYARYLEDFRVLPIYGGQSMGNQLRQL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGRI+DH  R  LL++ +  +V+DEAD ML MGFI  ++ I   +P  RQ
Sbjct: 125 KRGVHVIVGTPGRIMDHLRRKSLLLDKLTTVVLDEADEMLKMGFIEDVEWILGQMPAKRQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQ 237
           T LFSATM   ++ ++   L +P  I++   +++   I   +C V+ +     K   L +
Sbjct: 185 TALFSATMPSSVRHIASRHLHSPHDIKIKGKTASLPAINQRYCLVSDF----HKLDALTR 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+ ++     IIF   K     L   L  +G++  A++G++ Q  R K++   K+ T+ 
Sbjct: 241 MLEVEE-YDATIIFVRTKIATEELAKKLSARGYAAAALNGDMAQAQREKVVGQLKKNTLD 299

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  + HV N+D+P     YIHRIGRTGRAGR G A   VA  + + +
Sbjct: 300 IIVATDVAARGLDVKRISHVVNYDIPYDTGTYIHRIGRTGRAGRTGTATLFVAPRERRML 359

Query: 358 DAIEKL 363
            AI+K+
Sbjct: 360 SAIKKV 365


>gi|86142743|ref|ZP_01061182.1| putative RNA helicase dead-box protein [Leeuwenhoekiella blandensis
           MED217]
 gi|85830775|gb|EAQ49233.1| putative RNA helicase dead-box protein [Leeuwenhoekiella blandensis
           MED217]
          Length = 592

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 221/367 (60%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61
           F  LGL+  ++ AV D G+  P+ +Q K IP++L+   DV  +AQTGTGKTA+F  P++ 
Sbjct: 4   FKALGLNDAILQAVTDMGFKAPSEVQEKAIPVLLREETDVVALAQTGTGKTAAFGFPLIQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++      R  + LIL PTREL  Q+ +  + Y  +   L V  + GG   + Q +++ 
Sbjct: 64  RID---VNNRNTQGLILSPTRELCLQITNELKNYSSHVKGLNVVAVYGGANIQEQARQIS 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +++ TPGR+ D   R  + +  I+  V+DEAD ML+MGF   I  I +  P  ++T
Sbjct: 121 RGAQIIVATPGRMQDMMRRNMVDITGIDYCVLDEADEMLNMGFYEDITTILADTPKDKKT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+ ++++ F+++P  I V T +  AE + H +    A+   +   L++L  
Sbjct: 181 WLFSATMPKEVARIAKQFMKSPIEITVGTKNMGAENVSHEYYMVNAR--DRYQALKRLAD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   + + +IFC  K++   +  +L + G++  A+HG++ Q  R  ++ +F+   IQ++V
Sbjct: 239 ANPEIFS-VIFCRTKRDTQKVAENLIEDGYNASALHGDLSQNQRDLVMKSFRNRQIQMLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV HV N+ +P+  E Y HR GRTGRAG+ G +  +V+K +++ I  +
Sbjct: 298 ATDVAARGIDVDDVTHVINYQLPDEIETYTHRSGRTGRAGKTGISMVIVSKSELRKIRTL 357

Query: 361 EKLIEKK 367
           EK+I KK
Sbjct: 358 EKIINKK 364


>gi|323494504|ref|ZP_08099609.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323311231|gb|EGA64390.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 416

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 150/370 (40%), Positives = 220/370 (59%), Gaps = 19/370 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADLGL P +V  + +  Y +PTPIQ   IP VL   D+ G A TG+GKTA+F LP+L  
Sbjct: 10  FADLGLLPTLVERLEELEYSQPTPIQSYAIPHVLDGRDIVGGANTGSGKTAAFSLPILQK 69

Query: 62  ILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-----TVALLIGGIPFE 113
           IL++  +   R      LIL PTRELA+QVA N + Y  +Y+L     TVA+  GG+   
Sbjct: 70  ILQQDASDNRRGNYVSHLILVPTRELASQVAYNVKSY--SYHLRDKVKTVAVF-GGVSVN 126

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  G+D+++ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  I  L
Sbjct: 127 PQMLALRGGSDIVVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTDELNKILEL 186

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKC 232
           +P  +QTLLFSAT  D++  ++++ L+ P  +EV   S+ A T ++  F     +   K 
Sbjct: 187 LPEKKQTLLFSATFPDKVTTLAQHLLREP--VEVQLQSAEASTLVQRVFSVNKGE---KT 241

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           A+L  L++ Q   +  +IF N K    +L   L K+G +    HG+  Q +R ++L  FK
Sbjct: 242 AVLAHLIK-QHQWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLEGFK 300

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G IQ+++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G   +L+  +
Sbjct: 301 SGEIQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYD 360

Query: 353 DIKHIDAIEK 362
           D  H   IEK
Sbjct: 361 DYHHFKVIEK 370


>gi|331092062|ref|ZP_08340893.1| hypothetical protein HMPREF9477_01536 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402263|gb|EGG81834.1| hypothetical protein HMPREF9477_01536 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 528

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 221/369 (59%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+ P++  AV   G+ + +PIQ K IP++L+  D+ G AQTGTGKTA+F +P+L  
Sbjct: 6   FEQLGICPEIQKAVKYMGFEEASPIQAKAIPVILEGKDIIGQAQTGTGKTAAFGIPLL-- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +K   + +  + ++L PTRELA QVAD   N  KY   + + V  + GG     Q + L
Sbjct: 64  -QKVNPKNKKLQGIVLCPTRELAIQVADEIRNLAKY--MHGIKVLPIYGGQEIVKQIRSL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  ++I TPGR++DH  R  + M  +  +V+DEAD ML+MGF   I+ I   VP  RQ
Sbjct: 121 KNGTQIIIGTPGRVMDHMRRKTIKMEQVHTVVLDEADEMLNMGFREDIETILEGVPEERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + ++++ F +  + I+V     T   IE  +     +   K  +L +LL
Sbjct: 181 TVLFSATMPKAIMEITKKFQKKAEVIKVTKKELTVPNIEQFYYEVKPK--NKEEVLARLL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T K  ++FCN KK V  L  SL  +G+    +HG++ Q  R +++  F+ G   ++
Sbjct: 239 DIY-TPKLSVVFCNTKKQVDLLVTSLLGRGYFAAGLHGDMKQVQRDRVMQGFRSGKTDIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V  VFN+D+P   E Y+HRIGRTGRAGR G++F+ V+ +++  +  
Sbjct: 298 VATDVAARGIDVDEVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKLKE 357

Query: 360 IEKLIEKKV 368
           I++  + K+
Sbjct: 358 IQRYCKTKI 366


>gi|298241052|ref|ZP_06964859.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM
           44963]
 gi|297554106|gb|EFH87970.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM
           44963]
          Length = 562

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 140/352 (39%), Positives = 200/352 (56%), Gaps = 6/352 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L P     +      + TPIQ + IP +L   DV G + TG+GKT ++ +P++  
Sbjct: 4   FQDLPLQPATRAVLASMQITEQTPIQAEAIPALLAGKDVIGQSATGSGKTLAYAIPLIER 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K +   R+ + L+L PTRELA QV      +     LT ALL+GG  +E Q   L  G
Sbjct: 64  LAKNK---RVAQALVLVPTRELAVQVNSVLSTFAAPRRLTTALLVGGRRYEKQISALRYG 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A ++I TPGRI DH  +G L++ +I I V+DEAD+MLD GF P I+ I    P  RQ  L
Sbjct: 121 AQIIIGTPGRIKDHLEQGNLVLRDIRICVLDEADQMLDSGFGPEIEQILETSPEDRQMAL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   + K+ E +L++P ++ +   +    TIE   V    +  K  AL   L  +Q
Sbjct: 181 FSATMPTWIAKLQEKYLKDPVKVTITPEAGVQSTIEQ-IVYQVPRGKKVEALCTLLASTQ 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   +IF   K  V  L   L   GF+V   HG+  QR+R  +L  F+ G +Q+++A+
Sbjct: 240 GDIS--LIFGRTKMGVERLGEQLSNLGFAVGTFHGDKSQRAREDVLMAFRRGQVQMLLAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           D+AARGLDI  +  V N+++P+  E + HRIGRTGR GR+GKA TL+   D+
Sbjct: 298 DVAARGLDIRGITQVINYELPDSDELFTHRIGRTGRMGRYGKAVTLLVPSDM 349


>gi|212692656|ref|ZP_03300784.1| hypothetical protein BACDOR_02153 [Bacteroides dorei DSM 17855]
 gi|237709374|ref|ZP_04539855.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA]
 gi|237725060|ref|ZP_04555541.1| ATP-dependent RNA helicase [Bacteroides sp. D4]
 gi|265754557|ref|ZP_06089609.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA]
 gi|212664734|gb|EEB25306.1| hypothetical protein BACDOR_02153 [Bacteroides dorei DSM 17855]
 gi|229436798|gb|EEO46875.1| ATP-dependent RNA helicase [Bacteroides dorei 5_1_36/D4]
 gi|229456430|gb|EEO62151.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA]
 gi|263234671|gb|EEZ20239.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA]
          Length = 624

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 138/377 (36%), Positives = 227/377 (60%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+SP+++ A+ + GY  P P+Q + IP +L   +DV  +AQTGTGKTA+F LP++ 
Sbjct: 4   FEELGVSPEILKAIKEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLPLIQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            +E    + R+P+ LIL PTREL  Q+A +   Y K  + L V  + GG   E+Q + L+
Sbjct: 64  KIE---VKKRVPQALILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIESQIRMLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGR++D   R    +  I  +V+DEAD ML+MGF   I  I   VP  R T
Sbjct: 121 AGVHIIVATPGRLIDLMERKVAKLETIADVVMDEADEMLNMGFTDSINAILEKVPEDRNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSATM+ E+ ++++ +L + K I + T +  ++ + H     +A+   K A L+++  
Sbjct: 181 LMFSATMSPEISRIAKKYLHDAKEITIGTKNEGSKNVNHIAYLVHAK--DKYAALKRIAD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L + G++  ++HG + Q  R  ++  F++  +QL+V
Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRHLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKTGISIAIINLREKGKMREI 357

Query: 361 EKLIEKKVDWLNGDLSS 377
           E++I KK  ++ G++ S
Sbjct: 358 ERIINKK--FIMGEMPS 372


>gi|198243415|ref|YP_002215491.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197937931|gb|ACH75264.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326623237|gb|EGE29582.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 457

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 142/364 (39%), Positives = 216/364 (59%), Gaps = 8/364 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L  ++     +   + L+L 
Sbjct: 22  GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VSLFQTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF AQ   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQTLLFSAT  + +  +S   
Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            Q P RIE++T  +    IE  F  T A   +K +LLQ LL SQ    + ++FCN KK+ 
Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L   G S  A+HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           N+++    E ++HRIGRT RAG  G A +  A E+ +  + + ++++ K++WLN      
Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQP 374

Query: 379 NPPL 382
           + PL
Sbjct: 375 SLPL 378


>gi|156844737|ref|XP_001645430.1| hypothetical protein Kpol_534p53 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380651|sp|A7TJM9|DRS1_VANPO RecName: Full=ATP-dependent RNA helicase DRS1
 gi|156116092|gb|EDO17572.1| hypothetical protein Kpol_534p53 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 752

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 147/384 (38%), Positives = 221/384 (57%), Gaps = 16/384 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  V+  + D GY KP+PIQ  TIP+ L   D+   A TG+GKTA+F++P++  
Sbjct: 233 FNSLTLSRPVLKGLSDLGYTKPSPIQSATIPIGLSGKDIIAGAVTGSGKTAAFMIPIIER 292

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           L    A+V   R ++L PTRELA Q+AD  +K GK  + LT  L +GG+    Q ++L+ 
Sbjct: 293 LLYKPAKVASTRVIVLTPTRELAIQIADVGKKIGKYVSGLTFGLAVGGLNLRQQEQELKT 352

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR +DH  N     ++++E+LV+DEADRML+ GF   +  I +L+P  RQT
Sbjct: 353 RPDIVIATPGRFIDHVRNSSSFNVDSVEVLVMDEADRMLEEGFQEELNEILTLLPSKRQT 412

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +    L+ P RI +N P   A  +   FV    +   K ALL  L++
Sbjct: 413 LLFSATMNSRIKSLISLSLRKPVRIMINPPKQAAARLTQEFVRIRKRDHLKPALLFYLIR 472

Query: 241 SQDT--MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             D    K  ++F  +K+    L   L   G  V  +HG++ Q  R++ ++NFK   + +
Sbjct: 473 KLDGTGQKRIVVFVARKEMAHKLRIILGLLGMKVGELHGSLTQEQRLQSVNNFKSLEVPV 532

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED----- 353
           ++ +DLA+RGLDIP +  V NFD+P   E Y+HR+GRT RAGR G++ T V +       
Sbjct: 533 LICTDLASRGLDIPKIEVVINFDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSI 592

Query: 354 ----IKHID---AIEKLIEKKVDW 370
               IK ++   +  K + + V+W
Sbjct: 593 VRSAIKSVEESSSKNKAVSRNVEW 616


>gi|37362659|ref|NP_011932.2| Rrp3p [Saccharomyces cerevisiae S288c]
 gi|81175193|sp|P38712|RRP3_YEAST RecName: Full=ATP-dependent rRNA helicase RRP3; AltName:
           Full=Ribosomal RNA-processing protein 3
 gi|285809971|tpg|DAA06758.1| TPA: Rrp3p [Saccharomyces cerevisiae S288c]
          Length = 501

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 149/378 (39%), Positives = 219/378 (57%), Gaps = 28/378 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L P+++ A  +  Y KPTPIQ K IP  L+ HD+ G+AQTG+GKTA+F +P+L  
Sbjct: 83  FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 142

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +         IL PTRELA Q+ + F+  G    +    ++GG+    Q + L R 
Sbjct: 143 LWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRK 199

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQT 180
             ++I TPGR++DH    K   +  ++ LV+DEADR+LDM F P +  I  ++P   R T
Sbjct: 200 PHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTT 259

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-------TYAQYSKKCA 233
            LFSATMT ++ K+    L NP +  V+    T +T+    +        TY  Y     
Sbjct: 260 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIY----- 314

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           LL + +      K  IIF   K N   +  LC+ LE   FS  A+HG+++Q  RM  L  
Sbjct: 315 LLNEFIG-----KTMIIFTRTKANAERLSGLCNLLE---FSATALHGDLNQNQRMGSLDL 366

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV+
Sbjct: 367 FKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 426

Query: 351 KEDIKHIDAIEKLIEKKV 368
           + D++ I  IE+++ KK+
Sbjct: 427 QYDLELILRIEEVLGKKL 444


>gi|269137456|ref|YP_003294156.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda EIB202]
 gi|267983116|gb|ACY82945.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda EIB202]
 gi|304557530|gb|ADM40194.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda FL6-60]
          Length = 424

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 155/422 (36%), Positives = 233/422 (55%), Gaps = 12/422 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FAD  L P V+ A+   G+   TPIQ   +PL +   DV G AQTGTGKT +F+      
Sbjct: 6   FADFALHPMVIKALESKGFHSCTPIQALALPLAIAGRDVAGQAQTGTGKTLAFLASTFHY 65

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT       +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q + 
Sbjct: 66  LLTHPAIAERKTNQPRALIMAPTRELAVQIHSDAEPLAQETGLRLGLAYGGDGYDKQLRV 125

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE+G D+LI T GR++D+  +G + +  I+++V+DEADRM D+GFI  I+ +   +P T 
Sbjct: 126 LEQGVDILIGTTGRLIDYAKQGHVDLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPTA 185

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           Q L  LFSAT++  +++++   + N + +EV     T   I+      Y    +K  LLQ
Sbjct: 186 QRLNMLFSATLSYRVRELAFEHMNNAEYVEVEPEQKTGHRIQEELF--YPSNEEKMRLLQ 243

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL+ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G I
Sbjct: 244 TLLE-EEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVPQKKRLRILEDFTKGHI 302

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  GK+ +L  +E + +
Sbjct: 303 DILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGKSISLACEEYVLN 362

Query: 357 IDAIEKLIEKK--VDWLNGDLSSLNPPLEKIDIAQHNHARKNNP-IPQKSTGFDRRKKNY 413
           + AIE  I     V   N D    + P  K      N A    P  P++ +G  R  +  
Sbjct: 363 LPAIESYIGHSIPVSKYNSDALLKDLPAPKRLSRSRNGAGARRPGSPRRGSGAPRPNRKR 422

Query: 414 SS 415
           S 
Sbjct: 423 SG 424


>gi|260591877|ref|ZP_05857335.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           veroralis F0319]
 gi|260536161|gb|EEX18778.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           veroralis F0319]
          Length = 657

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 137/377 (36%), Positives = 229/377 (60%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+S ++  A+ + G+  P P+Q + IP +L  R+DV  +AQTGTGKTA+F LP+L 
Sbjct: 28  FEELGVSEEIRRAISELGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLPLLQ 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++      +  + ++L PTREL  Q+AD+ + +GK   +L +A + GG   + Q  +L 
Sbjct: 88  RIDTSS---KSTQAIVLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGASIDTQIHQLR 144

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGR++D  +RGK  ++ +  +V+DEAD ML+MGF   I  I + VP  R T
Sbjct: 145 HGVQIIVATPGRLIDLMHRGKARLDQVRNVVLDEADEMLNMGFQESITEILTGVPEDRNT 204

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ +++KV++ +L + K I V + +  AE++ H +    A+   K   L++L+ 
Sbjct: 205 LLFSATMSRDVEKVAKGYLHDYKEIVVGSRNEGAESVNHIYYMVNAR--DKYLALKRLVD 262

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   I+FC  K     +   L K G++  ++HG++ Q+ R   +  F+    Q++V
Sbjct: 263 FYPKI-YAIVFCRTKVETQEIADKLIKDGYNAESLHGDLSQQQRDLTMQKFRSHLTQILV 321

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  ENY HR GRTGRAG+ G + +++   +   +  I
Sbjct: 322 ATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKYKVRNI 381

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ I K  ++++G L S
Sbjct: 382 EREIGK--EFIDGTLPS 396


>gi|262369669|ref|ZP_06062997.1| superfamily II DNA and RNA helicase [Acinetobacter johnsonii SH046]
 gi|262315737|gb|EEY96776.1| superfamily II DNA and RNA helicase [Acinetobacter johnsonii SH046]
          Length = 383

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 142/374 (37%), Positives = 227/374 (60%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++  A+   G+   TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 5   FETLNLHPQLKRAIDALGFKDMTPIQQKVLKFTLAGHDAIGRAQTGTGKTAAFLVSVIND 64

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     ++ R R   PR LIL PTRELA Q+  + ++  K  +L V  L+GG+ F+ Q  
Sbjct: 65  LLNNPIQEQRYRGE-PRALILAPTRELALQIESDAKELTKFSDLHVVTLLGGVDFDKQKA 123

Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +L++   D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P 
Sbjct: 124 QLDKKPVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPR 183

Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTL+FSAT + ++  +++ +L  P  +E+     T   +E   V   A+ S K  L
Sbjct: 184 KEQRQTLMFSATFSYDVLNLAQQWLFEPVTVEIEPEKKTNADVEQR-VYMVAK-SDKYKL 241

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ +L+ +  ++  +IF N++  V  L  +L++ G+ V  + G I Q  R+K+L  FK G
Sbjct: 242 LQDILRDE-PIEKVMIFANRRDQVRKLYDNLKRDGYKVVMLSGEIAQDKRLKMLDQFKNG 300

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +M+A+D+A RG+ +  V HV NF +P ++++Y+HRIGRTGRAG  G + + ++++D 
Sbjct: 301 QHNIMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGTRGVSISFLSEDDA 360

Query: 355 KHIDAIEKLIEKKV 368
            ++  IEK I +K+
Sbjct: 361 FYLPEIEKAIGQKL 374


>gi|225556564|gb|EEH04852.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus G186AR]
          Length = 485

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 143/372 (38%), Positives = 221/372 (59%), Gaps = 14/372 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+   +  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 61  FKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL-- 118

Query: 63  LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +A +  P++L   IL PTRELA Q+++ FE  G   ++  A+++GG+   +Q   L
Sbjct: 119 ----QALMNKPQSLFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISL 174

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +++ TPGR+LDH    K   + N++ LV+DEADR+LD+ F P +  I  ++P  R
Sbjct: 175 GKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRER 234

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +T LFSATM+ +++ +    L NP R+ +++    T  T+   ++    +Y  K   L  
Sbjct: 235 RTYLFSATMSSKVESLQRASLSNPLRVSISSNKYQTVATLLQSYLFIPHKY--KDVYLVY 292

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL ++   ++ I+F         L   L   GF    +HG + Q SR+  LS F+  +  
Sbjct: 293 LL-NEYAGQSAIVFTRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALSKFRSRSRD 351

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIP V  V NFD+P+ ++ YIHR+GRT RAG+ G AF++V + DI+  
Sbjct: 352 ILVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVW 411

Query: 358 DAIEKLIEKKVD 369
             IE  + KK+D
Sbjct: 412 LRIENALGKKLD 423


>gi|225441549|ref|XP_002281113.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 622

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 145/362 (40%), Positives = 204/362 (56%), Gaps = 23/362 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++ L   +   +    YVKPTP+Q   IP+ L   D+   AQTG+GKTA+F  P+++ 
Sbjct: 165 FAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLSGKDLMACAQTGSGKTAAFCFPIISG 224

Query: 63  LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +  G+       AR   P  LIL PTREL+ Q+ D   K+     + V +  GG P   Q
Sbjct: 225 IMTGQFAQRPRGARTVYPLALILSPTRELSCQIHDEARKFSYQTGVKVVVAYGGAPINQQ 284

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV- 174
            ++LERG D+L+ TPGR++D   R ++ +  I  L +DEADRMLDMGF P I+ I   + 
Sbjct: 285 LRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMD 344

Query: 175 ---PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
              P  RQT+LFSAT   E+Q+++ +FL +   + V    S+ + I       +   S K
Sbjct: 345 MPPPGVRQTMLFSATFPKEIQRLASDFLSSYIFLAVGRVGSSTDLIVQ--RVEFVHESDK 402

Query: 232 CALLQQLLQSQDTMKNG--------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + L  LL +Q    NG        ++F   KK   +L H L   GF    IHG+  Q+ 
Sbjct: 403 RSHLMDLLHAQ--RANGAHGKQSLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQE 460

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G
Sbjct: 461 REHALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTG 520

Query: 344 KA 345
            A
Sbjct: 521 LA 522


>gi|184200491|ref|YP_001854698.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
 gi|183580721|dbj|BAG29192.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
          Length = 555

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 138/372 (37%), Positives = 211/372 (56%), Gaps = 12/372 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD G+   +V A+   G   P PIQ  T+P+ L   D+ G A+TGTGKT  F +P L  
Sbjct: 34  FADFGVRQDIVDALAAHGITSPFPIQAMTLPIALSGQDIIGQAKTGTGKTLGFGIPALQ- 92

Query: 63  LEKGR--------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
              GR        A+   P+ LI+ PTRELA QV  +     K  N  VA + GG P+E+
Sbjct: 93  RAVGRDDAGWEQLAKPGAPQALIVVPTRELAVQVGSDLSIAAKTRNARVATIYGGRPYES 152

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           Q  +LE+G +V++ TPGR++D  NR   L ++++ ++V+DEAD MLD+GF+P ++ + + 
Sbjct: 153 QIAELEKGVEVVVGTPGRLID-LNRQHFLDLSHVRMVVLDEADEMLDLGFLPDVEKLLAT 211

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           VP  RQT+LFSATM   +  ++  ++  P  I    P       +   V   A +  K  
Sbjct: 212 VPAVRQTMLFSATMPGPVVAMARRYMTRPMHIRAAAPDEGTTKKDIRQVIYRAHHLDKDE 271

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           ++ ++LQ++   ++ IIF   K+    L   L  +GF+   +HG++ Q +R + L  F+ 
Sbjct: 272 VVARILQAEGRGRS-IIFTRTKRAAAKLADELIHRGFAAAPLHGDLGQGAREQALRAFRN 330

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             + ++VA+D+AARG+D+ DV HV NF  P   + Y+HR GRTGRAG  G A T V  +D
Sbjct: 331 SKVDVLVATDVAARGIDVEDVTHVINFQCPEDEKTYLHRTGRTGRAGNKGTAITFVDWDD 390

Query: 354 IKHIDAIEKLIE 365
           +     I+K +E
Sbjct: 391 VPRWRLIDKALE 402


>gi|161784286|sp|Q5ACU6|RRP3_CANAL RecName: Full=ATP-dependent rRNA helicase RRP3
          Length = 539

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 145/394 (36%), Positives = 222/394 (56%), Gaps = 14/394 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L P ++ ++    + KPTPIQ + IP  L+  D+ G+AQTG+GKTA+F +P+L  
Sbjct: 125 FKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQS 184

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +        L+L PTREL  Q+ D F+  G +  L  + ++GG+    Q + L R 
Sbjct: 185 LWHAQQPYF---ALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRK 241

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             V++ TPGRI+DH    K   + N++ LV+DEADR+LDM F P +  I  ++P  R T 
Sbjct: 242 PHVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTY 301

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT++++K+    L NP R+ V++   TA+ +    +     Y  K  +L  LL +
Sbjct: 302 LFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGY--KNTILIHLL-N 358

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   K+ I+F     +           GF+   +HG + Q  R+  L+ FK     ++VA
Sbjct: 359 EFMGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVA 418

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP V  V N+D+P  ++ YIHR+GRT RAGR GK+ +L+ + D++    IE
Sbjct: 419 TDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIE 478

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
            ++ KK+   +       PP E +D A H H  K
Sbjct: 479 SVLGKKLPKED------KPPKEVLD-ALHVHVDK 505


>gi|325087574|gb|EGC40884.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus H88]
          Length = 485

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 143/372 (38%), Positives = 221/372 (59%), Gaps = 14/372 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+   +  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 61  FKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL-- 118

Query: 63  LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +A +  P++L   IL PTRELA Q+++ FE  G   ++  A+++GG+   +Q   L
Sbjct: 119 ----QALMNKPQSLFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISL 174

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +++ TPGR+LDH    K   + N++ LV+DEADR+LD+ F P +  I  ++P  R
Sbjct: 175 GKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRER 234

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +T LFSATM+ +++ +    L NP R+ +++    T  T+   ++    +Y  K   L  
Sbjct: 235 RTYLFSATMSSKVESLQRASLSNPLRVSISSNKYQTVATLLQSYLFIPHKY--KDVYLVY 292

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL ++   ++ I+F         L   L   GF    +HG + Q SR+  LS F+  +  
Sbjct: 293 LL-NEYAGQSAIVFTRTVNETQRLAILLRTLGFGSIPLHGQLSQSSRLGALSKFRSRSRD 351

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIP V  V NFD+P+ ++ YIHR+GRT RAG+ G AF++V + DI+  
Sbjct: 352 ILVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVW 411

Query: 358 DAIEKLIEKKVD 369
             IE  + KK+D
Sbjct: 412 LRIENALGKKLD 423


>gi|260775423|ref|ZP_05884320.1| ATP-dependent RNA helicase SrmB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608604|gb|EEX34769.1| ATP-dependent RNA helicase SrmB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 410

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 213/369 (57%), Gaps = 5/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA+L L   ++ A+ + GY +PT IQ + IP  L   D+   A TGTGKTA+FVLP L 
Sbjct: 4   NFAELELDENLLVAIEEMGYTRPTQIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQ 63

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    R   P R LIL PTRELA QVAD      KN NL +  + GG+ ++     L 
Sbjct: 64  YLQDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTNLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR++++    +     IE L++DEADRMLDMGF P +  ++S   + +QT
Sbjct: 124 KTQDIVVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSSECRWRKQT 183

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+  + ++  + + L+ P  I+        + I   +       + K ALL+ ++
Sbjct: 184 LLFSATLEGKGVEGFTADLLKEPAEIDAEPSRRERKKIAQWY-HRADDMAHKLALLKTII 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  I+F   ++ +  L   LEK       I G + Q  R   ++ F++GT+ ++
Sbjct: 243 NDQ--AERSIVFLKTRERLAELRVELEKAQIPCAWIQGEMPQDRRNNAIARFRDGTVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A +LV   D   +D 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRSADVYLHRIGRTARAGKKGNAISLVEAHDQTMMDR 360

Query: 360 IEKLIEKKV 368
           + + +++++
Sbjct: 361 VARYVKEEI 369


>gi|487961|gb|AAB68392.1| Yhr065cp [Saccharomyces cerevisiae]
          Length = 543

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 149/378 (39%), Positives = 219/378 (57%), Gaps = 28/378 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L P+++ A  +  Y KPTPIQ K IP  L+ HD+ G+AQTG+GKTA+F +P+L  
Sbjct: 125 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 184

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +         IL PTRELA Q+ + F+  G    +    ++GG+    Q + L R 
Sbjct: 185 LWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRK 241

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQT 180
             ++I TPGR++DH    K   +  ++ LV+DEADR+LDM F P +  I  ++P   R T
Sbjct: 242 PHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTT 301

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-------TYAQYSKKCA 233
            LFSATMT ++ K+    L NP +  V+    T +T+    +        TY  Y     
Sbjct: 302 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIY----- 356

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           LL + +      K  IIF   K N   +  LC+ LE   FS  A+HG+++Q  RM  L  
Sbjct: 357 LLNEFIG-----KTMIIFTRTKANAERLSGLCNLLE---FSATALHGDLNQNQRMGSLDL 408

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV+
Sbjct: 409 FKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 468

Query: 351 KEDIKHIDAIEKLIEKKV 368
           + D++ I  IE+++ KK+
Sbjct: 469 QYDLELILRIEEVLGKKL 486


>gi|255572248|ref|XP_002527063.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223533568|gb|EEF35307.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 650

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 146/387 (37%), Positives = 215/387 (55%), Gaps = 26/387 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++ L   +   +    YVKPTP+Q   IP+ L   D+   AQTG+GKTA+F  P+++ 
Sbjct: 190 FAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISG 249

Query: 63  LEKGR----------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
           + K +          AR+  P  LIL PTREL+ Q+ +   K+     + V +  GG P 
Sbjct: 250 IMKMQGQSAQRPLRGARMVYPLALILSPTRELSMQIHEEARKFSYQTGVKVVVAYGGAPI 309

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q ++LERG D+L+ TPGR++D   R ++ +  +  L +DEADRMLDMGF P I+ I  
Sbjct: 310 NQQLRELERGVDILVATPGRLVDLLERARVSLQMVRYLALDEADRMLDMGFEPQIRKIVE 369

Query: 173 L----VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
                 P  RQT+LFSAT   E+Q+++ +FL N   + V    S+ + I       + Q 
Sbjct: 370 QNDMPRPGARQTMLFSATFPKEIQRLATDFLFNYIFLAVGRVGSSTDLIIQRV--EFVQE 427

Query: 229 SKKCALLQQLLQSQDTMKNGI--------IFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
           S K + L  LL +Q    NG+        +F   KK   +L H L   GF   +IHG+  
Sbjct: 428 SDKRSHLMDLLHAQ--RANGVQGKQALTLVFVETKKGADSLEHWLYVNGFPATSIHGDRS 485

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q+ R + L +F+ G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG
Sbjct: 486 QQEREQALRSFRSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAG 545

Query: 341 RHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           + G A     + +     A+  L+++ 
Sbjct: 546 KSGLATAFFNEGNASLAMALADLMQES 572


>gi|197251196|ref|YP_002146376.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197214899|gb|ACH52296.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 457

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 140/355 (39%), Positives = 213/355 (60%), Gaps = 8/355 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L  ++     +   + L+L 
Sbjct: 22  GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF AQ   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQTLLFSAT  + +  +S   
Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            Q P RIE++T  +    IE  F  T A   +K +LLQ LL SQ    + ++FCN KK+ 
Sbjct: 199 QQQPMRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L   G S  A+HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
           N+++    E ++HRIGRT RAG  G A +  A E+ +  + + ++++ K++WLN 
Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369


>gi|85057334|ref|YP_456250.1| superfamily II DNA/RNA helicase [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789439|gb|ABC65171.1| superfamily II DNA and RNA helicase [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 547

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 135/371 (36%), Positives = 227/371 (61%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L +  +   A+ +  ++  TPIQ   IP +++ HDV G AQTGTGKT +F +P   I
Sbjct: 5   FEQLPILEQTKKALKELNFIDTTPIQALVIPEIIKGHDVIGQAQTGTGKTFAFGIP---I 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           +EK   +++  ++LIL PTREL  QV +  +K  + Y  + +A++ GG  +  Q + LE 
Sbjct: 62  IEKINPKIQKTQSLILCPTRELTLQVYEELKKLLRFYQEIRIAVVYGGESYTKQFRSLEA 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR +DH  RGK+ ++ ++IL +DEAD ML MGF   ++ I   +P  RQT+
Sbjct: 122 KPHLIIATPGRAIDHLERGKIDLSALKILTLDEADEMLKMGFQEALETILKKIPEERQTV 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++K++  + ++ K ++V   +     IE  +     +   K  LL +LL  
Sbjct: 182 LFSATLPPFIKKIASKYQKDTKILQVPVKNIAVNAIEQNYFL--VKEVDKAKLLVRLLDL 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + I+F N KK+V  +   L+ +GF   A+HG++ Q  R  +++NF++G I++++A
Sbjct: 240 KKDY-STILFANTKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V N+D+P+  E Y+HRIGRTGRAG+ G A++L++   +  +  +E
Sbjct: 299 TDVAARGLDISDIKMVINYDLPHEDEVYVHRIGRTGRAGKKGLAYSLISPRKVSQLKKLE 358

Query: 362 KLIEKKVDWLN 372
             +++K+  L+
Sbjct: 359 YYLKEKITLLD 369


>gi|302847755|ref|XP_002955411.1| DEAD-box RNA helicase, ATP-dependent [Volvox carteri f.
           nagariensis]
 gi|300259253|gb|EFJ43482.1| DEAD-box RNA helicase, ATP-dependent [Volvox carteri f.
           nagariensis]
          Length = 535

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 134/364 (36%), Positives = 210/364 (57%), Gaps = 21/364 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +      V+  V+ AG+ +PTPIQ +  P+ L   D+ G+A+TG+GKT +++LP +  
Sbjct: 115 FEEASFPEYVLAEVIRAGFKEPTPIQCQGWPMALLGRDLIGLAETGSGKTLAYLLPAVVH 174

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L+ G      P  L+L PTRELA Q+    +++G +  +   ++ GG P   Q 
Sbjct: 175 INAQPYLQPGDG----PIVLVLAPTRELAVQIQQECQRFGSSSRIKNTVVYGGAPKGPQA 230

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  G +++I TPGR++D  +     +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 231 RDLRSGVEIVIATPGRLIDMMDSRVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 290

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKK 231
            RQTLL+SAT   E+Q ++ +FL+NP ++ + +P   A     + +E   V  YA+Y + 
Sbjct: 291 DRQTLLWSATWPKEVQAIARDFLKNPYQVIIGSPELKANHNIRQIVE--MVEGYAKYPR- 347

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L++LL ++   +  +IFC  K+    L   L   G+    +HG+  Q+ R  +L  F
Sbjct: 348 ---LRKLLDTEMDGRRILIFCETKRGCDELVRQLRTDGYPALGLHGDKSQQERDWVLQEF 404

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K GT  +M+A+D+AARGLD+ D+  V N+D+P  AE+Y+HRIGRTGRAG HG A++    
Sbjct: 405 KNGTHPIMLATDVAARGLDVKDIKVVVNYDMPKTAEDYVHRIGRTGRAGAHGTAYSFFTG 464

Query: 352 EDIK 355
            D +
Sbjct: 465 ADAR 468


>gi|187734959|ref|YP_001877071.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425011|gb|ACD04290.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 604

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 138/367 (37%), Positives = 221/367 (60%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LG+SP+++ A+   G+  P+ IQ + IP  +   D+ G++ TG+GKT +F +P L  
Sbjct: 7   FSALGISPEILEAIEVLGFDTPSSIQEQAIPAAIGGADIVGLSHTGSGKTLAFAIPALEC 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLER 121
           ++      R  + L L PTRELA Q+    +K     +   A+ I GG  F  Q   L R
Sbjct: 67  ID---PEERCVQVLALCPTRELAVQICREVDKLALFMDGVSAVPIYGGSSFRPQLDALRR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G   ++ TPGR++D    G L ++ + +L++DEAD MLDMGF+  I+ I   +P  +QTL
Sbjct: 124 GVQFVVGTPGRVMDLMESGALRLDGLRMLILDEADEMLDMGFLEDIERIADAMPEGKQTL 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM+ E+ ++   F++ P +I +  P+ T  TIE  +      +S +  +L +LL +
Sbjct: 184 FFSATMSPEISRLVSRFMKEPVQISIERPTLTVPTIEQVYYEVV--FSSRIEVLSRLLDT 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +K G++F N KK V ++   L  +G+ V  +HG++ Q  R +++ +F++G+++L+VA
Sbjct: 242 -GKIKMGLVFANTKKVVDDVVDGLTARGYPVDRLHGDMPQMMRERVMDSFRKGSLRLLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ DV  V NF++P   E+Y+HRIGRT RAGR GKA T V + D   +  IE
Sbjct: 301 TDIAARGLDVDDVDAVVNFELPRDPEDYVHRIGRTARAGRKGKAITFVGRRDFSLMSRIE 360

Query: 362 KLIEKKV 368
           + I  K+
Sbjct: 361 RFIGVKL 367


>gi|156555544|ref|XP_001603956.1| PREDICTED: similar to vasa-like protein [Nasonia vitripennis]
          Length = 732

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 143/345 (41%), Positives = 205/345 (59%), Gaps = 17/345 (4%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEKGRARVRM----- 72
           +GY KPTP+Q   IP++L   D+   AQTG+GKTA+F++P++ T+L K R    M     
Sbjct: 320 SGYTKPTPVQKYGIPILLSGRDLMACAQTGSGKTAAFLIPIIHTLLAKDRDLSDMSSANQ 379

Query: 73  --PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130
             PR LI+ PTREL  Q+ D   K+ K+  L   ++ GG     Q K++ +G D+L+ TP
Sbjct: 380 VEPRALIISPTRELTIQIFDEARKFSKDSVLKCHIIYGGTSTSHQMKQIFQGVDILVATP 439

Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI----TSLVPFTRQTLLFSAT 186
           GR+LD   +GK+  + IE +V+DEADRMLDMGF+P ++ +    T   P  RQTL+FSAT
Sbjct: 440 GRLLDLVGKGKITFDAIEFVVLDEADRMLDMGFLPDVEKVLRHDTMKPPGERQTLMFSAT 499

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS--QDT 244
              E+Q+++  FL N   + V    S    IE  F     + S K   L++LL    +  
Sbjct: 500 FPQEIQQLAAKFLNNYVFVTVGIVGSACTDIEQSFFE--VKKSDKRTKLKELLNEEIEQN 557

Query: 245 MKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
           M NGI +F ++KK    +   L +  F   +IHG+  QR R + L +FK G + ++VA+ 
Sbjct: 558 MLNGILVFVSEKKTADFIAALLSEDNFPTTSIHGDRLQREREEALYDFKTGKMAILVATA 617

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +AARGLDI +V HV N+D+P   + YIHRIGRTGR G  GKA + 
Sbjct: 618 VAARGLDIKNVRHVINYDLPKEIDEYIHRIGRTGRVGNKGKATSF 662


>gi|260775114|ref|ZP_05884013.1| ATP-dependent RNA helicase RhlB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609031|gb|EEX35191.1| ATP-dependent RNA helicase RhlB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 433

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 146/382 (38%), Positives = 221/382 (57%), Gaps = 9/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FADLGL P+VV  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADLGLHPQVVEGLKKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L   E    +   PR +I+ PTRELA Q+ ++ E       +  AL  GG  ++ Q  K
Sbjct: 71  LLNTPEHEGRKPTQPRAIIMAPTRELAIQIYNDAEPLVAETGIKAALAYGGESYDKQLAK 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE+G DVLI T GRI+D + +    +NNI+ +V+DEADRM D+GFI  I+ +   +P  +
Sbjct: 131 LEQGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + L  LFSAT++  +Q+++   + NP+ + V     T   I+      Y     K +LLQ
Sbjct: 191 ERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEVKTGHRIQEELF--YPSNEHKMSLLQ 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ ++  +  IIF N K    ++   L   G  V  + G++ Q+ R +IL  F +G +
Sbjct: 249 TLIE-EEWPERAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKRERILEQFTKGEV 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   ++   +
Sbjct: 308 DLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAIN 367

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
           +  IE+ IE  +   + D S+L
Sbjct: 368 LPPIEEYIEHTIPVSDYDPSAL 389


>gi|254286224|ref|ZP_04961183.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae AM-19226]
 gi|150423639|gb|EDN15581.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae AM-19226]
          Length = 438

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 145/383 (37%), Positives = 220/383 (57%), Gaps = 11/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FAD GL P+V+  +   G+V  TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            + T   +GRA  + PR +I+ PTRELA Q+ ++ E    +  L  AL  GG  ++ Q  
Sbjct: 71  LLTTSAAEGRAETQ-PRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G D+LI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R  +LFSAT++  +Q+++   + NP+ + V     T   I+      Y     K ALL
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELF--YPSNEHKMALL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L      V  + G++ Q+ R +IL  F +G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   
Sbjct: 307 VDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAI 366

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
           ++ AIE  IE  +   + D S+L
Sbjct: 367 NLPAIESYIEHAIPTSDYDPSAL 389


>gi|197100123|ref|NP_001125347.1| probable ATP-dependent RNA helicase DDX23 [Pongo abelii]
 gi|67460452|sp|Q5RC67|DDX23_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX23; AltName:
           Full=DEAD box protein 23
 gi|55727779|emb|CAH90640.1| hypothetical protein [Pongo abelii]
          Length = 820

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 227/423 (53%), Gaps = 45/423 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      ++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q 
Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L+ +    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVPSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572

Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           +                          RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 573 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632

Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
               E +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK 
Sbjct: 633 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G++ C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+
Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHRIGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     A
Sbjct: 748 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 801

Query: 389 QHN 391
           QH 
Sbjct: 802 QHK 804


>gi|254413664|ref|ZP_05027434.1| DEAD/DEAH box helicase domain protein [Microcoleus chthonoplastes
           PCC 7420]
 gi|196179771|gb|EDX74765.1| DEAD/DEAH box helicase domain protein [Microcoleus chthonoplastes
           PCC 7420]
          Length = 464

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 138/366 (37%), Positives = 214/366 (58%), Gaps = 5/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS + +  +   G+  PT IQ + IP +L   DV   +QTGTGKTA+F LPML
Sbjct: 3   LSFNNLGLSEECLHQLEKLGFDTPTEIQSQAIPELLAGRDVVAQSQTGTGKTAAFSLPML 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++      R  + LIL PTRELA QVAD       N  + +  + GG   + Q + L+
Sbjct: 63  EQIDPN---ARGVQALILAPTRELARQVADAIRDLTSNRRVGIVTVYGGQSIDRQIRLLQ 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R A +++ TPGR++D  +RG L ++ ++ +V+DEAD ML MGFI  ++ I    P  RQT
Sbjct: 120 RNAQMVVGTPGRVIDLLDRGDLKLDQVKWVVLDEADEMLSMGFIDDVKKILKQAPKERQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM   ++ +   FL++P  + V  P +T   IE   V    +   K   LQ +L 
Sbjct: 180 ACFSATMPKAIRDLVNQFLKSPVTVTVELPKATPARIEQ-RVYMIPRGCSKSKALQPILA 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D  +  +IF   +++   L   L+  G SV   HG++ Q  R ++LS F++  ++ +V
Sbjct: 239 LEDP-EAALIFVRTRRSAAELTSQLQAAGHSVDEYHGDLSQSQRERLLSRFRQSQVRWVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P++ E+YIHRIGRTGRAG+ G A +L+   + + +  I
Sbjct: 298 ATDIAARGLDVDHLTHVINYDLPDQVESYIHRIGRTGRAGKTGTAISLIQPFERRKLHQI 357

Query: 361 EKLIEK 366
           E+ + +
Sbjct: 358 ERKVRQ 363


>gi|115757139|ref|XP_786173.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115973714|ref|XP_001179743.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 487

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 136/359 (37%), Positives = 215/359 (59%), Gaps = 8/359 (2%)

Query: 12  VVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV 70
           V+C   D   +  P+ IQ + +P+ LQ  DV G+A+TG+GKT +F LP+L  L +   R+
Sbjct: 68  VLCEACDKLKWKTPSKIQTEALPVALQGKDVIGLAETGSGKTGAFALPILQALLETPQRL 127

Query: 71  RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130
                L+L PTRELA Q+A+ FE  G    ++  +++GGI    Q  +L +   V+I TP
Sbjct: 128 F---ALVLTPTRELAYQIAEQFEALGSTIGVSCVVIVGGIDMMTQALQLAKKPHVMIATP 184

Query: 131 GRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           GR++DH    K   +  ++ LV+DEADR+L+M F   I  I  ++P  R+T L+SATMT 
Sbjct: 185 GRLVDHLENTKGFNLRGLKYLVMDEADRILNMDFEAEIDKILKVIPKQRRTYLYSATMTK 244

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
           ++ K+    LQ+P ++EV+T   T   ++  ++   A+Y K C L+  L  ++    + +
Sbjct: 245 KVAKLQRASLQDPVKVEVSTKYQTVSKLQQSYIFIPAKY-KDCYLVSIL--NEFAGNSFM 301

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           +FC+   N   +   L   G +   +HG + Q  R+  L+ FK  +  +++A+D+A+RGL
Sbjct: 302 VFCSTCNNTQRVALLLRNLGLTAIPLHGQLSQSKRLGTLNKFKSKSRSILIATDVASRGL 361

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           DIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    IE+LI+KK+
Sbjct: 362 DIPHVDCVINFDIPTHSKDYIHRVGRTARAGRAGKAITFVTQYDVELYQRIEQLIDKKL 420


>gi|260914551|ref|ZP_05921019.1| ATP-dependent RNA helicase RhlE [Pasteurella dagmatis ATCC 43325]
 gi|260631342|gb|EEX49525.1| ATP-dependent RNA helicase RhlE [Pasteurella dagmatis ATCC 43325]
          Length = 442

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 135/366 (36%), Positives = 208/366 (56%), Gaps = 4/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  L P ++ A+   GY +PT IQ +TIP  ++  DV G A TGTGKTA+F+LP +  
Sbjct: 6   FDDFDLDPALLKALAKKGYTRPTAIQQETIPAAMEERDVLGSAPTGTGKTAAFLLPAIQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR L+L PTRELA QVA+  E+     NL++A + GG+ ++   +   +
Sbjct: 66  LLDYPRRKPGAPRVLVLTPTRELAMQVAEQAEELSAFTNLSIATITGGVAYQNHGEVFNK 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +         ++EIL+ DEADRML MGF    + I +   + +QTL
Sbjct: 126 NQDIVVATPGRLLQYIKEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  E L   +   L +P  I+        + I+  F    +    K  LL + ++
Sbjct: 186 LFSATLEGELLVDFAGRLLTDPVEIDAEPSRRERKKIQQWFYHADSN-EHKIKLLARFIE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++ +  GI+F  +++ V  L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 245 -EEKVSRGIVFVRRREYVRELSETLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGVVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIEDVSHVMNFDLPYSADTYLHRIGRTARAGKKGVAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK 366
           ++  E+
Sbjct: 364 KRYTEE 369


>gi|317051436|ref|YP_004112552.1| DEAD/DEAH box helicase domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316946520|gb|ADU65996.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum
           S5]
          Length = 522

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 222/372 (59%), Gaps = 9/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L  +++ A+ D G+   TPIQ + +P  ++  D  G AQTGTGK+A+F++ ++  
Sbjct: 108 FHDLNLPEELMHAIYDLGFAYCTPIQEQVLPRAIEGKDAIGKAQTGTGKSAAFLMTIICR 167

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L    + +A +  PR LIL PTRELA Q++ +     +   L +  L GG+    Q ++L
Sbjct: 168 LLSRPQEKASIGRPRALILAPTRELAMQISKDAHDLCRYTPLKIVTLFGGMDMNKQRQRL 227

Query: 120 ERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI--TSLVPF 176
           E  A D+++ TPGR+LD   +  + +  +EILVIDEADRMLDMGFIP ++ I  +++   
Sbjct: 228 ENEAVDIVVATPGRLLDLKYQKCVFLGKVEILVIDEADRMLDMGFIPDVRQIVNSTMPKH 287

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT+++E+ +++  ++  P  +E+     T ET++     T  +  +K  LL 
Sbjct: 288 LRQTLLFSATLSNEVTRLASAWMTEPFMVEIEPEQVTVETVDQLVYITTRE--EKFTLLW 345

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             + +Q  +   I+F N++    +L   L + G +   + G + Q  R++ L NF+EG I
Sbjct: 346 NTI-NQANLTRVIVFANRRDETRHLSEKLTRYGVTNAILSGEVPQAKRIRTLENFREGKI 404

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+A RG+ +  + HV N+++P   E+Y+HRIGRTGRAG  G + +   + D  +
Sbjct: 405 AVLVATDVAGRGIHVDSISHVINYNLPENPEDYVHRIGRTGRAGASGISVSFACENDSFY 464

Query: 357 IDAIEKLIEKKV 368
           I AIE  I KK+
Sbjct: 465 IPAIEDYIGKKL 476


>gi|157736313|ref|YP_001488996.1| DEAD-box ATP dependent DNA helicase [Arcobacter butzleri RM4018]
 gi|157698167|gb|ABV66327.1| ATP-dependent RNA helicase, DEAD box family [Arcobacter butzleri
           RM4018]
          Length = 516

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 143/369 (38%), Positives = 219/369 (59%), Gaps = 9/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ +AG+ +P+PIQ + IP +L   D+ G A TGTGKTA+F LP  
Sbjct: 1   MTFNDFNFKELLQKAIDEAGFKEPSPIQEQAIPYILDGRDIVGQAHTGTGKTAAFGLP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL K +A+  +   +I+ PTRELA QV+D   ++GK   +  A + GG  +  Q K +E
Sbjct: 59  -ILNKIKAKSGVEAVVIV-PTRELAMQVSDELYRFGKFLGINTATVYGGQAYARQIKLIE 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             + V++ TPGR LD   RG  +    + +++DEAD MLDMGF+  I+ I + +P  RQT
Sbjct: 117 NSS-VIVATPGRFLDLL-RGDKISIKPKFVILDEADEMLDMGFLDDIKEIFTFLPENRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +++  L+ P+ + +     T   I   F     +  +  AL++  L 
Sbjct: 175 LLFSATMPTAIKNLAKTILKEPEFVTLTKSDVTNSKITQTFYVV-DEKERDDALIR--LF 231

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  IIFC  KK+V  L   L  QGF   A+HG+++Q+ R + +  FK   +++++
Sbjct: 232 DFKNPKKSIIFCRTKKDVDRLSTFLVSQGFMAKALHGDMEQKQREEAIRAFKSSKLEILI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HVFN+ +P  +E+Y+HRIGRTGRAG+ G A ++V   + + +  I
Sbjct: 292 ATDVAARGLDVNDVTHVFNYHLPFDSESYVHRIGRTGRAGKEGMAISIVTPHEFRMLQKI 351

Query: 361 EKLIEKKVD 369
           EK I  K++
Sbjct: 352 EKSIGTKLE 360


>gi|269102593|ref|ZP_06155290.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268162491|gb|EEZ40987.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 402

 Score =  257 bits (656), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 143/365 (39%), Positives = 214/365 (58%), Gaps = 21/365 (5%)

Query: 27  IQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL----------------EKGRARV 70
           +Q + IPL L   DV   AQTGTGKTA+F LPML  L                 + R + 
Sbjct: 1   MQEQAIPLALTGVDVMAGAQTGTGKTAAFALPMLHRLMSYPAASELHADEAEQTEQRKQP 60

Query: 71  RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130
            + R L+L PTRELA QV DN   Y K+ +L V +  GG     Q K L++GAD++I TP
Sbjct: 61  ALIRGLVLTPTRELAQQVYDNVMTYCKHTDLKVVVAYGGTSMNVQVKALQQGADIVIATP 120

Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190
           GR++DH + G L +  +E  V+DEADRMLDMGFI  I+ I   +   RQTL FSAT + +
Sbjct: 121 GRLIDHMHVGTLSLKYLECFVLDEADRMLDMGFIIDIKRIMKRMAAERQTLFFSATFSKQ 180

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGII 250
           ++K++ + +  PK +EV   ++ AET++           +K  LL  L+ S++  +  ++
Sbjct: 181 VKKLAFDIMTEPKMVEVTPANTAAETVQQMVYPV--DKHRKRELLSYLIGSRN-WQQVLV 237

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F   K+    L   L   G    +I+G+  Q +R + L +FK G ++ +VA+D+AARG+D
Sbjct: 238 FTKTKQGSDELVKELGLDGIKAASINGDKSQGARQRALDDFKSGKVRALVATDVAARGID 297

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV-- 368
           I  + +V NFD+P + E+Y+HRIGRTGRAG  G A TL++ ++   +  IE+L++ ++  
Sbjct: 298 IEQLEYVVNFDMPFKPEDYVHRIGRTGRAGSAGHAITLMSLDEEWILKGIEELLDTRLPQ 357

Query: 369 DWLNG 373
            WL G
Sbjct: 358 QWLEG 362


>gi|255544624|ref|XP_002513373.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223547281|gb|EEF48776.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 442

 Score =  257 bits (656), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 137/368 (37%), Positives = 221/368 (60%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F +LG+  ++V A  + G+  PT IQI++IP  L+  D+ G+AQTG+GKT +F LP+L +
Sbjct: 11  FKELGVCDQLVTACDNLGWKNPTKIQIESIPHALEGKDLIGLAQTGSGKTGAFALPILQS 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LE     V+     +L PTRELA Q+A+ FE  G +  +  A+L+GG+    Q+  L +
Sbjct: 71  LLEASEKSVQAFFACVLSPTRELAIQIAEQFEALGSDIGVKCAVLVGGVDMVQQSIALGK 130

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR++DH +  K   +  ++ LV+DEADR+L+  F   +  I  ++P  R+T
Sbjct: 131 RPHIVVATPGRLVDHLSNTKGFSLRTLKYLVLDEADRLLNEDFEKSLDEILKVIPRERRT 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT +++K+    L+NP +IE  +  ST +T++  +    A+Y K C L+  L  
Sbjct: 191 FLFSATMTKKVKKLQRACLRNPVKIEAASKYSTVDTLKQEYRFIPAKY-KDCYLVYIL-- 247

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++ +    ++F         L   L   G     I+G++ Q  R+  L+ FK G   +++
Sbjct: 248 TEKSGSTSMVFTRTCDATTFLALVLRNLGLRAIPINGHMTQSKRLGALNKFKAGECNILI 307

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR G A +LV + +++    I
Sbjct: 308 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYEVEWFIQI 367

Query: 361 EKLIEKKV 368
           EKLI KK+
Sbjct: 368 EKLIGKKL 375


>gi|218258510|ref|ZP_03474866.1| hypothetical protein PRABACTJOHN_00521 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225386|gb|EEC98036.1| hypothetical protein PRABACTJOHN_00521 [Parabacteroides johnsonii
           DSM 18315]
          Length = 610

 Score =  257 bits (656), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 144/384 (37%), Positives = 226/384 (58%), Gaps = 10/384 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG++  ++ A+ + GY  P P+Q + IP +L   +DV  +AQTGTGKTA+F LP   
Sbjct: 4   FEELGVAAPILKAIQEMGYESPMPVQEEVIPFLLGDDNDVIALAQTGTGKTAAFGLP--- 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           IL+K       P+ L+L PTREL  Q+AD+   Y K   NL V  + GG   E+Q K L+
Sbjct: 61  ILQKIDVTTYQPQALVLCPTRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIESQIKTLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR+LD  NR  + ++ ++ +++DEAD ML+MGF   I  I + VP  R  
Sbjct: 121 RGVHVVVATPGRLLDLMNRKTVNLSLVKNVIMDEADEMLNMGFTDSINAILAEVPENRNM 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+  +++ +++NPK I +   +   + I   +    AQ   K   L+++  
Sbjct: 181 LLFSATMPKEIAAITKRYMKNPKEIVIGNKNEGNKNIRDIYYMVRAQ--DKYLALKRIAD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GI+FC  +K    +   L + G++  ++HG + Q  R  ++  F+   IQL+V
Sbjct: 239 FYPNIY-GIVFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRVKNIQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G + ++   ++   I  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGISISICHVKEKGKIREI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E++I KK +   G++ S +   EK
Sbjct: 358 ERIINKKFE--KGEIPSGSAICEK 379


>gi|207856830|ref|YP_002243481.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206708633|emb|CAR32955.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 457

 Score =  257 bits (656), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 142/364 (39%), Positives = 216/364 (59%), Gaps = 8/364 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L  ++     +   + L+L 
Sbjct: 22  GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF AQ   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQTLLFSAT  + +  +S   
Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            Q P RIE++T  +    IE  F  T A   +K +LLQ LL SQ    + ++FCN KK+ 
Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L   G S  A+HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           N+++    E ++HRIGRT RAG  G A +  A E+ +  + + ++++ K++WLN      
Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQP 374

Query: 379 NPPL 382
           + PL
Sbjct: 375 SLPL 378


>gi|297581767|ref|ZP_06943689.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC385]
 gi|297534174|gb|EFH73013.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC385]
          Length = 438

 Score =  257 bits (656), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 145/383 (37%), Positives = 220/383 (57%), Gaps = 11/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FAD GL P+V+  +   G+V  TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            + T   +GRA  + PR +I+ PTRELA Q+ ++ E    +  L  AL  GG  ++ Q  
Sbjct: 71  LLTTPAAEGRAETQ-PRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G D+LI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R  +LFSAT++  +Q+++   + NP+ + V     T   I+      Y     K ALL
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELF--YPSNEHKMALL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L      V  + G++ Q+ R +IL  F +G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   
Sbjct: 307 VDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAI 366

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
           ++ AIE  IE  +   + D S+L
Sbjct: 367 NLPAIESYIEHAIPTSDYDPSTL 389


>gi|325577158|ref|ZP_08147642.1| ATP-dependent RNA helicase SrmB [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160740|gb|EGC72861.1| ATP-dependent RNA helicase SrmB [Haemophilus parainfluenzae ATCC
           33392]
          Length = 443

 Score =  257 bits (656), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 138/383 (36%), Positives = 216/383 (56%), Gaps = 6/383 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +  LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP +  
Sbjct: 6   FEEFDLSPELLKALEKKGYTRPTAIQLEAIPAAMEERDVLGSAPTGTGKTAAFLLPAIQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVA+  E+  +  +L +A + GG+ ++   +    
Sbjct: 66  LLDYPRRKPGAPRILILTPTRELAMQVAEQAEELAQFTHLKIATITGGVAYQNHGEVFNS 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +          +E+L+ DEADRML MGF    + I +   + +QTL
Sbjct: 126 NQDIVVATPGRLLQYIKEENFDCRAVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  EL    +E  L +P +I+        + I   +    +    K  LL + ++
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKIDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   + GI+F  ++++V  L  +L K+G     + G++ Q  R   +   K G + ++V
Sbjct: 245 TEKVSR-GIVFVRRREDVRELSDTLRKRGIRSTYLEGDMAQTQRNNAIDKLKSGVVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVTHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381
           ++  E+  K   L G      PP
Sbjct: 364 KRYTEELLKARILEGLEPRTKPP 386


>gi|47221754|emb|CAG08808.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1046

 Score =  257 bits (656), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 152/443 (34%), Positives = 243/443 (54%), Gaps = 17/443 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +   G+S K++ A+    Y KPTPIQ + IP V+   D+ GIA+TG+GKT +F+LPM   
Sbjct: 345 WVQCGVSMKILSALKKHTYEKPTPIQAQAIPAVMSGRDLIGIAKTGSGKTIAFLLPMFRH 404

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L+
Sbjct: 405 IMDQRPLEESEGPIAVIMTPTRELALQITKECKKFSKPLGLRVVCVYGGTGISEQIAELK 464

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   V   
Sbjct: 465 RGAEIIVCTPGRMIDMLGANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDSVRPD 524

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALLQ 236
           RQT++FSAT    ++ ++   L  P  ++V   S     +E H  V    +   K   L 
Sbjct: 525 RQTVMFSATFPRAMEALARRILNKPIEVQVGGRSVVCSDVEQHVLVI---EEDNKFLKLL 581

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + IIF +++++   L   L K  +   ++HG IDQ  R  I+++FK G  
Sbjct: 582 ELLGHYQERGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKSGAC 641

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +LMVA+ +AARGLD+  +  V N++ PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 642 RLMVATSVAARGLDVKQLILVVNYNCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARY 701

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     L+G  SS+ P LE++ ++  +  +    I + S+GF  +   +  +
Sbjct: 702 AGDIIKALE-----LSG--SSVPPELEQLWVSFKDQQKAEGKIIKSSSGFSGKGFKF-DE 753

Query: 417 KSHIPLKESEKISKLQQDIQEND 439
             H    E +K+ K    +Q++D
Sbjct: 754 TEHALANERKKLQKAALGLQDSD 776


>gi|315635445|ref|ZP_07890711.1| ATP-dependent RNA helicase DeaD [Arcobacter butzleri JV22]
 gi|315480203|gb|EFU70870.1| ATP-dependent RNA helicase DeaD [Arcobacter butzleri JV22]
          Length = 516

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 143/369 (38%), Positives = 219/369 (59%), Gaps = 9/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ +AG+ +P+PIQ + IP +L   D+ G A TGTGKTA+F LP  
Sbjct: 1   MTFNDFNFKELLQKAIDEAGFKEPSPIQEQAIPYILDGRDIVGQAHTGTGKTAAFGLP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL K +A+  +   +I+ PTRELA QV+D   ++GK   +  A + GG  +  Q K +E
Sbjct: 59  -ILNKIKAKSGVEAVVIV-PTRELAMQVSDELYRFGKFLGINTATVYGGQAYARQIKLIE 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             + V++ TPGR LD   RG  +    + +++DEAD MLDMGF+  I+ I + +P  RQT
Sbjct: 117 NSS-VIVATPGRFLDLL-RGDKISIKPKFVILDEADEMLDMGFLDDIKEIFTFLPENRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +++  L+ P+ + +     T   I   F     +  +  AL++  L 
Sbjct: 175 LLFSATMPTAIKNLAKTILKEPEFVTLTKSDVTNSKITQTFYVV-DEKERDDALIR--LF 231

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  IIFC  KK+V  L   L  QGF   A+HG+++Q+ R + +  FK   +++++
Sbjct: 232 DFKNPKKSIIFCRTKKDVDRLSTFLVSQGFMAKALHGDMEQKQREEAIRAFKSSKLEILI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HVFN+ +P  +E+Y+HRIGRTGRAG+ G A ++V   + + +  I
Sbjct: 292 ATDVAARGLDVNDVTHVFNYHLPFDSESYVHRIGRTGRAGKEGMAISIVTPHEFRMLQKI 351

Query: 361 EKLIEKKVD 369
           EK I  K++
Sbjct: 352 EKSIGTKLE 360


>gi|238918068|ref|YP_002931582.1| ATP-dependent RNA helicase RhlB [Edwardsiella ictaluri 93-146]
 gi|238867636|gb|ACR67347.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 424

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 153/423 (36%), Positives = 237/423 (56%), Gaps = 14/423 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FAD  L P V+ A+   G+   TPIQ   +PL +   DV G AQTGTGKT +F+      
Sbjct: 6   FADFALHPMVIKALESKGFHSCTPIQALALPLAIAGRDVAGQAQTGTGKTLAFLASTFHY 65

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT       +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q + 
Sbjct: 66  LLTHPAIAERKTNQPRALIMAPTRELAVQIHSDAEPLAQETGLRLGLAYGGDGYDKQLRV 125

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE+G D+LI T GR++D+  +G + +  I+++V+DEADRM D+GFI  I+ +   +P T 
Sbjct: 126 LEQGVDILIGTTGRLIDYAKQGHVDLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPTA 185

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           Q L  LFSAT++  +++++   + N + +EV     T   I+      Y    +K  LLQ
Sbjct: 186 QRLNMLFSATLSYRVRELAFEHMNNAEYVEVEPEQKTGHRIQEELF--YPSNEEKMRLLQ 243

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL+ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G I
Sbjct: 244 TLLE-EEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVPQKKRLRILEDFTKGHI 302

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E + +
Sbjct: 303 DILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGNSISLACEEYVLN 362

Query: 357 IDAIEKLIEKK--VDWLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           + AIE  I     V   NGD  L  L  P +++  +++    +    P++ +G  R  + 
Sbjct: 363 LPAIESYIGHSIPVSKYNGDALLKDLPAP-KRLSRSRNGTGARRPGSPRRGSGAPRPNRK 421

Query: 413 YSS 415
            S 
Sbjct: 422 RSG 424


>gi|15640333|ref|NP_229960.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121591056|ref|ZP_01678369.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 2740-80]
 gi|121729652|ref|ZP_01682129.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V52]
 gi|147674746|ref|YP_001218575.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O395]
 gi|153803135|ref|ZP_01957721.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-3]
 gi|153822829|ref|ZP_01975496.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33]
 gi|153827161|ref|ZP_01979828.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-2]
 gi|153831014|ref|ZP_01983681.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 623-39]
 gi|227080519|ref|YP_002809070.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae M66-2]
 gi|229506898|ref|ZP_04396406.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae BX 330286]
 gi|229509271|ref|ZP_04398754.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33]
 gi|229512687|ref|ZP_04402155.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TMA 21]
 gi|229516215|ref|ZP_04405663.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC9]
 gi|229520976|ref|ZP_04410397.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TM 11079-80]
 gi|229524737|ref|ZP_04414142.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae bv. albensis
           VL426]
 gi|229527200|ref|ZP_04416593.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 12129(1)]
 gi|229606411|ref|YP_002877059.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MJ-1236]
 gi|254227021|ref|ZP_04920581.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V51]
 gi|254851439|ref|ZP_05240789.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MO10]
 gi|255744103|ref|ZP_05418057.1| ATP-dependent RNA helicase RhlB [Vibrio cholera CIRS 101]
 gi|262161995|ref|ZP_06031012.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae INDRE 91/1]
 gi|262167974|ref|ZP_06035673.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC27]
 gi|262192566|ref|ZP_06050716.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae CT 5369-93]
 gi|298500937|ref|ZP_07010739.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MAK 757]
 gi|32363416|sp|Q9KV52|RHLB_VIBCH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040085|sp|A5F3R4|RHLB_VIBC3 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797692|sp|C3LQR1|RHLB_VIBCM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|9654717|gb|AAF93479.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547089|gb|EAX57224.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 2740-80]
 gi|121628586|gb|EAX61065.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V52]
 gi|124121326|gb|EAY40069.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-3]
 gi|125620457|gb|EAZ48831.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V51]
 gi|126519647|gb|EAZ76870.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33]
 gi|146316629|gb|ABQ21168.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O395]
 gi|148873506|gb|EDL71641.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 623-39]
 gi|149738958|gb|EDM53276.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-2]
 gi|227008407|gb|ACP04619.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae M66-2]
 gi|227012164|gb|ACP08374.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O395]
 gi|229335208|gb|EEO00692.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 12129(1)]
 gi|229338318|gb|EEO03335.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae bv. albensis
           VL426]
 gi|229341861|gb|EEO06862.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TM 11079-80]
 gi|229346641|gb|EEO11611.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC9]
 gi|229350197|gb|EEO15149.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TMA 21]
 gi|229353586|gb|EEO18523.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33]
 gi|229356003|gb|EEO20922.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae BX 330286]
 gi|229369066|gb|ACQ59489.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MJ-1236]
 gi|254847144|gb|EET25558.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MO10]
 gi|255738368|gb|EET93759.1| ATP-dependent RNA helicase RhlB [Vibrio cholera CIRS 101]
 gi|262023507|gb|EEY42209.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC27]
 gi|262028373|gb|EEY47029.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae INDRE 91/1]
 gi|262031611|gb|EEY50199.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae CT 5369-93]
 gi|297540441|gb|EFH76500.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MAK 757]
 gi|327483175|gb|AEA77582.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae LMA3894-4]
          Length = 438

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 145/383 (37%), Positives = 220/383 (57%), Gaps = 11/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FAD GL P+V+  +   G+V  TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            + T   +GRA  + PR +I+ PTRELA Q+ ++ E    +  L  AL  GG  ++ Q  
Sbjct: 71  LLTTPAAEGRAETQ-PRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G D+LI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R  +LFSAT++  +Q+++   + NP+ + V     T   I+      Y     K ALL
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELF--YPSNEHKMALL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L      V  + G++ Q+ R +IL  F +G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   
Sbjct: 307 VDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAI 366

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
           ++ AIE  IE  +   + D S+L
Sbjct: 367 NLPAIESYIEHAIPTSDYDPSAL 389


>gi|242278297|ref|YP_002990426.1| DEAD/DEAH box helicase [Desulfovibrio salexigens DSM 2638]
 gi|242121191|gb|ACS78887.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
          Length = 521

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 218/370 (58%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F +LGLS  ++ A+   G+  PTPIQ KTIP++L    D+ G AQTGTGKTA+F LP++ 
Sbjct: 4   FRNLGLSDAIIEALEKKGFTAPTPIQEKTIPMLLSGEKDIVGQAQTGTGKTAAFGLPIIE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + +G   V+    ++L PTRELA QVAD    +  +  + VA + GG P   Q K L+R
Sbjct: 64  NVREGAGHVQ---AIVLTPTRELAMQVADEIISFRGSRKVFVATVYGGQPMLPQLKALKR 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GAD+++ TPGR+LDH  R  L ++ I   V+DEAD M +MGF+  +  I       R+TL
Sbjct: 121 GADIVVGTPGRVLDHIRRKTLDLSQINNFVLDEADEMCNMGFLEEVSEIMENAGEDRRTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           LFSATM  E+  +++ F+ +   + V      A   E  F  V    ++   C    +++
Sbjct: 181 LFSATMPREVMNIAKKFMGDYDVVSVKREKDEAPLTELIFHEVNERDRFEALC----RVV 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q     G++FC  + +   +  +L ++G+    IHG++ Q  R  IL  F++   +++
Sbjct: 237 DAQPEF-YGLVFCRTRADADRVAGTLAERGYPAEPIHGDLSQARREDILMRFRKRRCKIL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+PD+ HV NF +P   ++++HR+GRTGRAG+ G A TL+   +   +  
Sbjct: 296 VATDVAARGIDVPDLSHVVNFALPQDPQSFVHRVGRTGRAGKKGVAVTLITPREFGKLRY 355

Query: 360 IEKLIEKKVD 369
           I K+ + +VD
Sbjct: 356 ITKITKLRVD 365


>gi|126663594|ref|ZP_01734591.1| putative RNA helicase dead-box protein [Flavobacteria bacterium
           BAL38]
 gi|126624542|gb|EAZ95233.1| putative RNA helicase dead-box protein [Flavobacteria bacterium
           BAL38]
          Length = 642

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 129/367 (35%), Positives = 226/367 (61%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61
           F  LGL+  ++ A+ D G+  P+ +Q K IP++L+++ D+  +AQTGTGKTA+F  P++ 
Sbjct: 4   FEQLGLNESLLLAIKDLGFENPSEVQEKAIPVLLEQNTDLVALAQTGTGKTAAFGFPLIQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++   A  R  + LIL PTREL  Q+ +  + Y K    L    + GG     Q ++++
Sbjct: 64  KID---AENRNTQALILSPTRELCLQITNEIKLYSKYIKGLHTVAVYGGASITEQAREVK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +++ TPGR+ D  NRG + + NI+  ++DEAD ML+MGF   I +I S  P  + T
Sbjct: 121 RGAQIIVATPGRMQDMINRGLVNIKNIDFCILDEADEMLNMGFYEDICSILSDTPDEKNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+ ++++ F+ +P  I V + +S + T+ H +    A+   +   L++L  
Sbjct: 181 WLFSATMPAEVARIAKQFMSSPVEITVGSKNSGSATVSHEYYCVNAR--DRYEALKRLAD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   + + ++FC  K++   +   L + G++  A+HG++ Q  R  ++ +F+   IQ++V
Sbjct: 239 ANPDIFS-VVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQAQRDGVMKSFRGRQIQMLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HV N+ +P+  E Y HR GRTGRAG+ G +  ++ K +++ I +I
Sbjct: 298 ATDVAARGIDVDNITHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIITKSELRKISSI 357

Query: 361 EKLIEKK 367
           E++I++K
Sbjct: 358 ERIIQQK 364


>gi|260941344|ref|XP_002614838.1| hypothetical protein CLUG_04853 [Clavispora lusitaniae ATCC 42720]
 gi|238851261|gb|EEQ40725.1| hypothetical protein CLUG_04853 [Clavispora lusitaniae ATCC 42720]
          Length = 748

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 143/385 (37%), Positives = 223/385 (57%), Gaps = 17/385 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L+  V+  +   GY KP+PIQ  +IP+ L   D+   A TG+GKTA++++P++  
Sbjct: 238 FQSLDLARPVLKGLASLGYTKPSPIQSASIPIALLGKDIVAGAVTGSGKTAAYMIPIIER 297

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           L    ++V   R +IL PTRELA QV D  +K G+  N LT  L +GG+    Q ++L+ 
Sbjct: 298 LLYKSSKVASTRVVILTPTRELAIQVCDVGKKIGRYVNNLTFGLAVGGLNLRQQEQQLKT 357

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQ 179
             D+++ TPGR++DH  N     ++ +EILV+DEADRML+ GF   +  I +L+P   RQ
Sbjct: 358 RPDIVVATPGRLIDHIRNSASFSLDALEILVMDEADRMLEEGFQVELTEILTLIPKHKRQ 417

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  ++Q + +  L  P RI ++ P + A  +   FV    +   K ALL  LL
Sbjct: 418 TMLFSATMNTKIQDLIQLSLNKPVRIMIDPPKAAANKLVQEFVRIRKKDEMKPALLYYLL 477

Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +S D  +    ++F ++K+    L   L   G  V  +HG++ Q  R+  +++FK  T+ 
Sbjct: 478 KSVDPSQQSRIVVFVSRKETAHRLRIILGLLGMKVSELHGSLTQEQRLNNVNDFKNLTVP 537

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-------- 349
           +++ +DLAARGLDIP +  V N+D+P   E Y+HR+GRT RAGR G++ T V        
Sbjct: 538 VLICTDLAARGLDIPKIEMVINYDMPKSHEIYLHRVGRTARAGREGRSITFVGEAAADRN 597

Query: 350 ----AKEDIKHIDAIEKLIEKKVDW 370
               A + ++   + +K + + VDW
Sbjct: 598 IVKAAMKSLEESQSQQKAVSRNVDW 622


>gi|224052974|ref|XP_002297644.1| predicted protein [Populus trichocarpa]
 gi|222844902|gb|EEE82449.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 217/386 (56%), Gaps = 26/386 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++ L   +   +    YVKPTP+Q   IP+ L   D+   AQTG+GKTA+F  P+++ 
Sbjct: 123 FAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISLTGRDLMACAQTGSGKTAAFCFPIISG 182

Query: 63  LEKGR----------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
           + K +          AR   P  LIL PTREL+ Q+ +  +K+     + V +  GG P 
Sbjct: 183 IMKMQDQSAQRPLRGARTVYPLALILSPTRELSMQIHEEAKKFSYQTGVKVVVAYGGAPI 242

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q ++LERG D+L+ TPGR++D   R ++ +  I+ L +DEADRMLDMGF P I+ I  
Sbjct: 243 HQQLRELERGVDILVATPGRLVDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVE 302

Query: 173 LV----PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
            +    P +RQT+LFSAT   E+Q+++ +FL +   + V    S+ + I       + Q 
Sbjct: 303 QMDMPPPGSRQTMLFSATFPKEIQRLASDFLASYVFLAVGRVGSSTDLIAQ--RVEFVQE 360

Query: 229 SKKCALLQQLLQSQDTMKNGI--------IFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
           S K + L  LL +Q    NG+        +F   KK   +L H L    F   +IHG+  
Sbjct: 361 SDKRSHLMDLLYAQ--RANGVQGKQDLTLVFVETKKGADSLEHWLCINNFPATSIHGDRS 418

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q+ R + L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG
Sbjct: 419 QQEREQALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAG 478

Query: 341 RHGKAFTLVAKEDIKHIDAIEKLIEK 366
           + G A     + +      + +L+++
Sbjct: 479 KSGLATAFFNEGNASMARPLSELMQE 504


>gi|317495876|ref|ZP_07954239.1| DEAD/DEAH box helicase [Gemella moribillum M424]
 gi|316914053|gb|EFV35536.1| DEAD/DEAH box helicase [Gemella moribillum M424]
          Length = 485

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 138/359 (38%), Positives = 216/359 (60%), Gaps = 7/359 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG+S K+V ++ +  +V PT IQ +TIP VL   D+   AQTG+GKT +F +P++  
Sbjct: 4   FEELGVSSKIVESLTNMNFVSPTGIQTETIPYVLSGIDILAQAQTGSGKTGAFGIPIVDT 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + K        ++LIL PTRELA QV +      +   L V+++ GG   E Q + L++ 
Sbjct: 64  VRKTEEL----QSLILAPTRELAQQVGEQLRLMSRVKGLKVSIIFGGTSIERQIQDLKKR 119

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++DH NR  + +  +  LV+DEAD ML+MGFI  ++ I S +    QTLL
Sbjct: 120 PQIIVGTPGRVIDHINRKTIRLETLTHLVLDEADEMLNMGFIEDVRFILSKITSRHQTLL 179

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   + ++S++F+++ K ++  +       I     AT A+ ++K   L   L  Q
Sbjct: 180 FSATMPKTIMELSKDFMKDYKLVKTMSDEDLNPDITEF--ATIARENEKLETLIGFLDVQ 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     I+F   K+ V  L  +L  +G+    +HG+I Q  R++IL  FK  ++Q++VA+
Sbjct: 238 NP-NLAIVFGRTKRRVDELSSALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQILVAT 296

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           D+AARG+DI DV HV+NFD+P   E+Y HRIGRTGRAG+ G A T +   ++ ++  IE
Sbjct: 297 DVAARGIDISDVTHVYNFDIPQDTESYTHRIGRTGRAGKSGVAVTFLNPIEMPYLKDIE 355


>gi|256831947|ref|YP_003160674.1| DEAD/DEAH box helicase domain-containing protein [Jonesia
           denitrificans DSM 20603]
 gi|256685478|gb|ACV08371.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM
           20603]
          Length = 544

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 135/370 (36%), Positives = 211/370 (57%), Gaps = 9/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  L   +V A+  AG V P PIQ  T+P+ L  HD+ G A+TGTGKT  F LP+L  
Sbjct: 25  FADFPLRSDIVAALASAGIVSPFPIQSLTLPVALSGHDIIGQAKTGTGKTLGFGLPLLNR 84

Query: 63  L----EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    E+G  ++  P   + +++ PTRELA QVA + E      ++ +  L GG  +E Q
Sbjct: 85  VVAPGEEGFDQLPAPGKPQAVVIVPTRELAVQVAKDLELASSTRSVRIVQLYGGRAYEPQ 144

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG +V++ TPGR++D   +  L +    ++V+DEAD MLD+GF+P ++ I +  P
Sbjct: 145 IAALNRGVEVVVGTPGRMIDMLKQKHLTLLRAGVIVLDEADEMLDLGFLPDVEKILAQTP 204

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCAL 234
             RQ +LFSATM   +  ++  ++  P  I    P     T+++     Y A    K  +
Sbjct: 205 AVRQMMLFSATMPGAVVAMARRYMNQPTHIRAQDPEDLGSTVKNITQVVYRAHPLDKVEM 264

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + ++LQ++    + +IF   K+N   +   L ++GF+  A+HG++ Q +R + L  F+ G
Sbjct: 265 IARILQARGRGLS-VIFTRTKRNAAKVADELTERGFAAGALHGDLGQGAREQALRAFRNG 323

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ +V HV N+ VP   + Y+HR GRTGRAG  G A T V  ED+
Sbjct: 324 KVDVLVATDVAARGIDVENVTHVINYQVPEDDKVYLHRTGRTGRAGNKGTAVTFVDWEDL 383

Query: 355 KHIDAIEKLI 364
                I K +
Sbjct: 384 HTWTLINKAL 393


>gi|157693344|ref|YP_001487806.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus pumilus
           SAFR-032]
 gi|157682102|gb|ABV63246.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus pumilus
           SAFR-032]
          Length = 480

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 128/339 (37%), Positives = 204/339 (60%), Gaps = 6/339 (1%)

Query: 24  PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRE 83
           PTP+Q +T+ +   + D+   +QTG+GKTA++ LP+  +++    +   P+ LIL PTRE
Sbjct: 27  PTPVQHETLSVAFSKQDLIVKSQTGSGKTAAYGLPICEMVDWAENK---PQALILVPTRE 83

Query: 84  LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           LA QV  +    G+   +  A + G  PF+AQ  +L +   ++  TPGR+LDH  +G L 
Sbjct: 84  LAMQVKQDLTSLGRLKRIKAAAIFGKAPFQAQKIELAQKNHIVCGTPGRVLDHLEKGTLS 143

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           + N++  V+DEAD ML+MGFI  + +I   +P  R ++LFSATM+DE++K+SE FLQ+PK
Sbjct: 144 LENLKFFVLDEADEMLNMGFIDQVSSIIQYLPPKRMSMLFSATMSDEMKKLSEQFLQSPK 203

Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
            IE+    ++   I H  + T  +   K +LLQ+ +  ++   + IIFCN +  V  L  
Sbjct: 204 VIEIAREETSVPQITHTVIET--EEEAKFSLLQRTIVIENP-DSCIIFCNTQDRVNELTM 260

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
            L++       IHG + Q  R  ++  FK G  + ++A+D+AARG+D+ D+ HV ++D+P
Sbjct: 261 KLDEWDVPCDKIHGGMRQEDRFAVMDEFKNGEFRYLIATDIAARGIDVSDMTHVIHYDLP 320

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
              E YIHR GRTGRAG+ GK    + +     ID +++
Sbjct: 321 YEKERYIHRTGRTGRAGKSGKTIAFMTRNAKPLIDELKE 359


>gi|91214661|ref|ZP_01251634.1| putative RNA helicase dead-box protein [Psychroflexus torquis ATCC
           700755]
 gi|91187088|gb|EAS73458.1| putative RNA helicase dead-box protein [Psychroflexus torquis ATCC
           700755]
          Length = 586

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 228/369 (61%), Gaps = 12/369 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61
           F  LGLSP+++ A+ D G+  P+ +Q +TIP++L+   D+  +AQTGTGKTA+F  P++ 
Sbjct: 4   FESLGLSPEILRAIEDLGFESPSEVQEQTIPVLLEESTDMVALAQTGTGKTAAFGFPLIQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++    + +    LIL PTREL  Q+ +  ++Y K Y NL+   + GG     Q ++++
Sbjct: 64  NIDLNSKKTQ---GLILSPTRELCMQITNELKQYSKYYQNLSTVAVYGGASITDQARQIK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA +++ TPGR+ D   R  + ++NI I ++DEAD ML+MGF   I+ I S     + T
Sbjct: 121 KGAQIIVATPGRMKDMIQRNIIDISNISICILDEADEMLNMGFFEDIKEILSHSSDQKNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
            LFSATM  E+  +++ F++NPK I V   + + +++ H +  V    +YS   A+ + +
Sbjct: 181 WLFSATMPKEVSIIAKKFMKNPKEITVGQKNISTKSVSHEYFIVGGRDRYS---AVKRVV 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             + D     ++FC  K++   +   L + G+S  A+HG++ Q  R  ++++F+   IQ+
Sbjct: 238 DANPDIY--AVVFCRTKRDAQKVAEKLIEDGYSASALHGDLSQAQRDMVMNSFRRKQIQM 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+ HV N+ +P+  E Y HR GRTGRAG+ GK+  +V K +++ I 
Sbjct: 296 LVATDVAARGIDVDDITHVINYQLPDEIEIYTHRSGRTGRAGKEGKSLVIVTKSEVRKIK 355

Query: 359 AIEKLIEKK 367
            +E++I +K
Sbjct: 356 QVERMIGQK 364


>gi|320157377|ref|YP_004189756.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus MO6-24/O]
 gi|319932689|gb|ADV87553.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus MO6-24/O]
          Length = 408

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 215/368 (58%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P ++ A+ + GY +PT IQ + IP  L+  D+   A TGTGKTA+FVLP L  
Sbjct: 5   FADLDLDPNLLAAIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLPALQY 64

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+    R   P R LIL PTRELA QVAD      KN +L +  + GG+ ++     L  
Sbjct: 65  LQDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTSLNIFTITGGVQYQEHADILAT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR++++    +     IE L++DEADRMLDMGF P +  +++   + +QT+
Sbjct: 125 TQDIVVATPGRLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTM 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  + ++  + + L +P  I+        + I   +    +    K ALL+ ++ 
Sbjct: 185 LFSATLEGKGVEGFTADLLNDPADIDAEPSRRERKKITQWYYRADS-MEHKLALLKDIIN 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +Q   +  I+F   ++ + +L   LE +  +   I G + Q  R   ++ F++G++ +++
Sbjct: 244 NQ--AERTIVFLKTRERLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNVLL 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+PDV HV NFD+P  A+ Y+HRIGRT RAG+ G A ++V   D   +D +
Sbjct: 302 ATDVAARGIDLPDVSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRV 361

Query: 361 EKLIEKKV 368
            + +++ +
Sbjct: 362 ARYVKEDI 369


>gi|299533009|ref|ZP_07046396.1| hypothetical protein CTS44_19497 [Comamonas testosteroni S44]
 gi|298719233|gb|EFI60203.1| hypothetical protein CTS44_19497 [Comamonas testosteroni S44]
          Length = 469

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 142/363 (39%), Positives = 210/363 (57%), Gaps = 10/363 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LSP+++  +   GY + TPIQ  ++PL LQ  D+   A TG+GKTA+F LPM+  
Sbjct: 16  FSALPLSPEMLANLQQLGYAQMTPIQAASLPLTLQGKDLIAQASTGSGKTAAFGLPMVDR 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L     R    + L+L PTRELA QVA    +  +   N+ V  + GG+P   Q   LE 
Sbjct: 76  LNP---RWFAVQALVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRNQIASLEN 132

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++D   RGKL + N++ LV+DEADRMLDMGF+  I+ +    P  RQTL
Sbjct: 133 GAHIVVGTPGRVMDLMERGKLDIGNLKTLVLDEADRMLDMGFLGDIETVVRQCPADRQTL 192

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLLQ 240
           LFSAT  D +  ++  F+++P+ ++V T  S  +  +  + V    +      LL     
Sbjct: 193 LFSATYPDGIASLASRFMRDPQTVKVATQHSAGKIAQRWYEVGARDKVDTVAKLLAHFRP 252

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ I FCN K+   ++   L+ QGFS  A+ G ++QR R ++L  F   +  ++V
Sbjct: 253 -----ESSIAFCNTKQQCRDVVSELQAQGFSALALFGELEQRERDEVLVQFANKSCSVLV 307

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+  V N DV    E +IHRIGRTGR    G A  LV+ +++  +  I
Sbjct: 308 ATDVAARGLDIADLSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLVSMDEMGSVGKI 367

Query: 361 EKL 363
           E+L
Sbjct: 368 EQL 370


>gi|94500946|ref|ZP_01307471.1| putative ATP-dependent RNA helicase DbpA [Oceanobacter sp. RED65]
 gi|94426886|gb|EAT11869.1| putative ATP-dependent RNA helicase DbpA [Oceanobacter sp. RED65]
          Length = 466

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 151/396 (38%), Positives = 224/396 (56%), Gaps = 24/396 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P ++  + D GY +  PIQ +++P +++  DV G A+TG+GKTA+F L +L  
Sbjct: 10  FSSLKLDPALLQNLEDLGYQQMRPIQAQSLPAIIEGKDVIGQAKTGSGKTAAFALGLLHH 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L+  R RV+    L+L PTRELA QVA    +  +  +N+ V  L GG+PF  Q   LE 
Sbjct: 70  LDVKRFRVQH---LVLCPTRELADQVAKEIRQLARAIHNIKVLTLCGGMPFGPQVGSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI +H  +  L + +I   V+DEADRMLDMGF   +++I + +P  RQTL
Sbjct: 127 GAHIVVGTPGRIEEHIRKNNLPLKDITGFVLDEADRMLDMGFQDSLESIVNALPKQRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + ++K++      P R+EV   S     I+  F        +  AL   LL  
Sbjct: 187 LFSATYPENIEKLAAWVTNKPVRVEVQE-SDVHSQIKQLFYRLQDNKQRMTAL--SLLLK 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++  ++ I+FCN K+    +   L  QGFS  A+HG+++QR R + L  F   +  +MVA
Sbjct: 244 KEKPESSIVFCNTKREAQEIADELRSQGFSAVALHGDLEQRQRDQTLVRFANKSASIMVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT---------LVAKE 352
           +D+AARGLDI  V  VFN+ +    E ++HR+GRTGR  + GKAF+         LVA E
Sbjct: 304 TDVAARGLDIESVDAVFNYHLARDPEVHVHRVGRTGRGDKKGKAFSFYTDKEGYKLVALE 363

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           +   +DA  + +         D S L+ P  K  +A
Sbjct: 364 ETLSVDATAQKLP--------DFSVLDKPAFKAPMA 391


>gi|330828264|ref|YP_004391216.1| ATP-dependent RNA helicase SrmB [Aeromonas veronii B565]
 gi|328803400|gb|AEB48599.1| ATP-dependent RNA helicase SrmB [Aeromonas veronii B565]
          Length = 407

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 214/368 (58%), Gaps = 4/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  L P +  A+ + G+ +PT IQ   +   L   D+   A TGTGKTASF+LP L  
Sbjct: 5   FDDFDLHPALNRALAEMGFTRPTTIQQMVLEPALDGRDILASAPTGTGKTASFLLPALQH 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +    R LIL PTRELA QV  + +    + NL++  +IGG+  E Q   L +
Sbjct: 65  LLDFPRRKPGPCRMLILTPTRELALQVTAHAKALAAHTNLSIETIIGGVSHEEQLPALTK 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L++  + +   ++IE+LV+DEADRMLDMGFI  +  I +   + + T+
Sbjct: 125 TTDIVVATPGRLLEYIEKEEFESHDIEVLVLDEADRMLDMGFIKDVNRIVAEARYRKHTM 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+    L+K +   L++P  +    P S    I   ++      + K ALL  +L+
Sbjct: 185 LFSATLEGAGLEKFANEILKDPVELHAEPPRSERRPITQ-WIHLADDAAHKLALLTHILK 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +T K  IIF   ++ +  L   L+  G S   I G ++Q  R++ +  F EG +  ++
Sbjct: 244 DPETQK-AIIFVKTRERLAELSGQLQAAGISCAWIRGEMEQSKRIESIRKFHEGEVPFLI 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+P+V HV N+D+P  A+ Y+HRIGRTGRAG  G A +LV   D+  +  I
Sbjct: 303 ATDVAARGIDLPNVSHVINYDMPYGADVYVHRIGRTGRAGNRGCAISLVEAHDMAMVAKI 362

Query: 361 EKLIEKKV 368
           E+  E+++
Sbjct: 363 ERYTEERL 370


>gi|251778643|ref|ZP_04821563.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243082958|gb|EES48848.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 480

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 220/371 (59%), Gaps = 6/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    LS +++ A+ + GY  P+ +Q K IP VL+  D+   +QTG+GKTASF +P+  
Sbjct: 4   EFNKFELSGELLKAIDNLGYKTPSEVQEKAIPEVLRNKDLVVKSQTGSGKTASFGIPLCE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +   P+ L+L PTRELA Q++++    G+   +    + G      Q +KL++
Sbjct: 64  KIDWDENK---PQVLVLAPTRELAVQISEDISNIGRYKRINCVPIFGKQSIMDQERKLKQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH +RG L ++ I   VIDEAD ML+MGFI  ++ I   +P  R TL
Sbjct: 121 KTHIVVGTPGRVLDHIDRGSLDVSKINYFVIDEADEMLNMGFIKQVEAIIRRIPKKRVTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ DE++ + +  +  P  I + + + T++ + H   A +  Y++K   L  +L S
Sbjct: 181 LFSATIPDEIKNLCDKHMNRPIDIAIKSQNLTSDNVSH--YAYHVGYNQKLDSLNNILIS 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  ++FC  K+NV  +   L K+G+S   IHG + Q+ R+  +  F+ G  +++VA
Sbjct: 239 E-MPETSVVFCRTKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFRILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RG+DI  + HV N+D+P   E Y+HRIGRTGRAG  G A T       ++++ IE
Sbjct: 298 TDIASRGIDIEGITHVINYDIPVEKEAYVHRIGRTGRAGAKGVALTFCKDSGDRYLNEIE 357

Query: 362 KLIEKKVDWLN 372
           + I  K++  N
Sbjct: 358 EYIGFKLEVKN 368


>gi|170099095|ref|XP_001880766.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644291|gb|EDR08541.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 498

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 136/361 (37%), Positives = 205/361 (56%), Gaps = 10/361 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  +G    ++ ++   G+  PTPIQ +  P+ L   DV  IAQTG+GKT SF LP +
Sbjct: 61  VSFDQVGFPEYLMSSIRAQGFDAPTPIQCQAWPMALTGRDVVAIAQTGSGKTISFALPAM 120

Query: 61  ------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                  +L  G      P  L+L PTRELA Q+     K+G N  +    + GG P   
Sbjct: 121 LHINAQPLLAPGDG----PIALVLAPTRELAVQIQQECTKFGSNSRIRNTAIYGGAPKGP 176

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L+RG +++I TPGR++D     K  +  +  LV+DEADRMLDMGF P I+ I S +
Sbjct: 177 QIRDLQRGVEIVIATPGRLIDMLETQKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQI 236

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTL+FSAT   ++QK++ +FL++  ++ + +   TA       V   + + K+  L
Sbjct: 237 RPDRQTLMFSATWPKDVQKLANDFLRDMIQVNIGSMELTANHNIQQIVEVCSDFEKRNKL 296

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           ++ L Q        +IF   K+   ++   L + G+   AIHG+ +QR R  +L  FK G
Sbjct: 297 IKHLDQISAENAKVLIFVATKRVADDITKYLRQDGWPALAIHGDKEQRERDWVLGEFKAG 356

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +++A+D+A+RGLD+ DVG+V N+D PN  E+YIHRIGRTGRAG  G ++T    ++ 
Sbjct: 357 RSPILIATDVASRGLDVKDVGYVINYDFPNNCEDYIHRIGRTGRAGMKGISYTYFTTDNA 416

Query: 355 K 355
           K
Sbjct: 417 K 417


>gi|312130721|ref|YP_003998061.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311907267|gb|ADQ17708.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 400

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 153/373 (41%), Positives = 218/373 (58%), Gaps = 11/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L P V   +    Y   TPIQ   IPLVL++ D+   AQTGTGKTA+F++P+L
Sbjct: 1   MKFEELNLHPDVKNGIEAMNYQDTTPIQEMAIPLVLEKKDLLACAQTGTGKTAAFLIPIL 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE---AQN 116
           +++ E+G  ++    TLIL PTRELA Q+ +  E  G    +T   + GG   E    Q 
Sbjct: 61  SLIREEGGDQLS---TLILVPTRELAKQIDEQVEGLGYFVGVTSLAIYGGGKGENWGQQR 117

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GAD++I TPGR+L H   GK+  + I+ LV+DEAD+MLDMGF   I  I   +P 
Sbjct: 118 TALIEGADIIIATPGRLLAHMQSGKIKFDTIKRLVLDEADKMLDMGFSDDINFIIKHLPK 177

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL+FSATM  +++  + N L+NPK I ++  S  AE I+  F    A   +K ALL 
Sbjct: 178 ERQTLMFSATMPPKIRTFARNILKNPKEISLSV-SKPAEKIDQRFY--MAADEQKLALLN 234

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL   +  K  IIF +Q+  +  +   L +       +  +I+Q  R   L +FK G  
Sbjct: 235 HLLSPFEGQKI-IIFTSQRSMIHKILKDLSRNKLKAKGVSSDIEQDEREVALRDFKAGKF 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ +RG+DI ++  V NFDVP  AE+YIHRIGRT RA   G + T + ++D K 
Sbjct: 294 NILVATDVLSRGIDISNLNLVVNFDVPRDAEDYIHRIGRTARADTEGVSITFLTEKDRKA 353

Query: 357 IDAIEKLIEKKVD 369
           +  IE L+EK+V+
Sbjct: 354 VKDIEALLEKEVE 366


>gi|302341638|ref|YP_003806167.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
           2075]
 gi|301638251|gb|ADK83573.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
           2075]
          Length = 490

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 139/381 (36%), Positives = 217/381 (56%), Gaps = 6/381 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FAD  L   ++  + D+GY   TPIQ +TIPL L   DV G AQTGTGKTA+F++P+   
Sbjct: 26  FADFNLPEPLLRGLADSGYTHCTPIQERTIPLGLAGKDVAGEAQTGTGKTAAFLVPIFYH 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L   R   + P  LI+ PTRELA Q+ D+ ++ G++ +L +  + GG+ +  Q + L  
Sbjct: 86  MLRDQRTDRQFPAALIIAPTRELAVQIYDDAQQIGRHTDLRMVAVFGGVDYLKQARALRE 145

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQ 179
           G D+++ TPGR +D+  +  L +  ++ LVIDEADR+ DMGFI  ++ I   +P    RQ
Sbjct: 146 GVDIVVATPGRAIDYIKQRALDLRAVKHLVIDEADRLFDMGFIADLRWIMRRLPPYDRRQ 205

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           ++LFSAT+   + +++  F+  P ++ V     T E ++       A       L     
Sbjct: 206 SMLFSATLGYRVLELTYEFMNMPAKVSVAPRQRTVEQVDQELYHCSAPEKMSLLLGLLRR 265

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D +   +IF N K+ V  + + L   G     I G++ QR RM++L  FK G ++++
Sbjct: 266 EGVDRV---MIFANTKRAVDAIAYKLRGNGLPAEGISGDLTQRRRMQLLEQFKSGELKIL 322

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+++AARGL + ++ HV N+DVP   E+Y+HRIGRT RAG  GKA TL       H+  
Sbjct: 323 VATNVAARGLHVENISHVINYDVPADPEDYVHRIGRTARAGAVGKAITLCCDRYATHLPY 382

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           +E+ + +K+     D S   P
Sbjct: 383 VEEYLGEKIPVCWADDSLFVP 403


>gi|50419843|ref|XP_458454.1| DEHA2C17534p [Debaryomyces hansenii CBS767]
 gi|74659385|sp|Q6BTL5|DRS1_DEBHA RecName: Full=ATP-dependent RNA helicase DRS1
 gi|49654120|emb|CAG86536.1| DEHA2C17534p [Debaryomyces hansenii]
          Length = 771

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 150/389 (38%), Positives = 224/389 (57%), Gaps = 21/389 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  V+  +   GY KP+PIQ   IP+ L   D+   A TG+GKTA++++P++  
Sbjct: 260 FQSLQLSRPVLKGLSQLGYTKPSPIQSACIPIALLGKDIVAGAVTGSGKTAAYMIPIIER 319

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           L    A++   R ++L PTRELA QV D  +K G+  N L   L +GG+    Q ++L+ 
Sbjct: 320 LLYKPAKISSTRVIVLAPTRELAIQVCDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKT 379

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQ 179
             D++I TPGR++DH  N     ++++E+LVIDEADRMLD GF   +  I SL+P   RQ
Sbjct: 380 RPDIVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQAELTEILSLIPRHKRQ 439

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLL+SATM  ++Q + +  LQ P R+ ++ P S A  +   FV    +   K ALL QL+
Sbjct: 440 TLLYSATMNTKIQDLIQLSLQKPVRVMIDPPKSAAIKLVQEFVRIRKRDHLKPALLFQLI 499

Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +S D  +    ++F  +K++   L   L   G  V  +HG++ Q  R+  +++FK  T+ 
Sbjct: 500 KSVDPSQQNRIVVFVARKESAHKLRIILGLLGMRVSELHGSLTQEQRLASVNDFKNLTVP 559

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA------- 350
           +++ +DLAARGLDIP +  V N+D+P   E Y+HR+GRT RAGR GK+ T V        
Sbjct: 560 VLICTDLAARGLDIPKIEIVINYDMPKTHEIYLHRVGRTARAGREGKSITFVGESTQDRA 619

Query: 351 --KEDIKHIDAIE-------KLIEKKVDW 370
             K+ IK I   +       K + + VDW
Sbjct: 620 IVKDAIKSISEEQARNSKQGKAVSRNVDW 648


>gi|323491504|ref|ZP_08096686.1| ATP-dependent RNA helicase SrmB [Vibrio brasiliensis LMG 20546]
 gi|323314258|gb|EGA67340.1| ATP-dependent RNA helicase SrmB [Vibrio brasiliensis LMG 20546]
          Length = 411

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 212/369 (57%), Gaps = 5/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA+L L P ++ A+ + GY +PT IQ + IP  L   DV   A TGTGKTA+F LP L 
Sbjct: 4   NFAELELDPNLLLAIEEMGYDRPTQIQAEAIPQALDGRDVLASAPTGTGKTAAFALPALQ 63

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    R   P R LIL PTRELA QVAD      K+ NL +  + GG+ ++     L 
Sbjct: 64  FLQDFPRRKPGPARVLILTPTRELAMQVADQARALAKHTNLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR++++    +     IE L++DEADRMLDMGF P +  ++S   + +QT
Sbjct: 124 TTQDIVVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSSECRWRKQT 183

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+  + ++  + + L++P  I+        + I   +       + K  LL+++L
Sbjct: 184 LLFSATLEGKGVEGFTADLLKDPAEIDAEPSRRERKKIAQWY-HRADDMTHKLELLKKIL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  I+F   ++ +  L   LEK       I G + Q  R   ++ F++GT+ ++
Sbjct: 243 TEQ--AERSIVFLKTRERLAELRTELEKAQIPCAWIQGEMPQDRRNNAIARFRDGTVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A +LV   D   ID 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRSADVYLHRIGRTARAGKKGNAVSLVEAHDQPMIDR 360

Query: 360 IEKLIEKKV 368
           + + +++ +
Sbjct: 361 VARYVKEDI 369


>gi|228473039|ref|ZP_04057796.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228275621|gb|EEK14398.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 588

 Score =  256 bits (655), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 222/371 (59%), Gaps = 10/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61
           F  LGLS  ++ A+ D G+ +P+ +Q   IP++L+   D+  +AQTGTGKTA+F  P+L 
Sbjct: 11  FKTLGLSAPLLEAIDDLGFERPSEVQQAAIPVLLEAPTDMVALAQTGTGKTAAFGFPLLQ 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           +++  +   RM + LIL PTREL  Q+A   ++Y K    + +  + GG   E Q + L+
Sbjct: 71  LIDPTQ---RMTQGLILAPTRELCLQIASELKQYAKYMPQVHIVAIYGGASIEEQARSLK 127

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA +++ TPGR+ D   R    +  I   V+DEAD ML+MGF   I++I S  P  + T
Sbjct: 128 KGAHIIVATPGRMQDMMRREFTSIAQISYCVLDEADEMLNMGFYEDIRSILSETPDDKNT 187

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLL 239
            LFSATM  E+ K+++ F+ +PK I +   +  +  + H C++    Q   +   L++L 
Sbjct: 188 WLFSATMPAEVAKIAKEFMHHPKEITIGHKNQASNNVLHECYIVNGRQ---RYEALKRLA 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +  ++ + ++FC  K++   +   L + G++  A+HG++ Q  R  ++  F+   IQ++
Sbjct: 245 DANPSIFS-VVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKGFRAKQIQML 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ D+ HV ++ +P+  E Y HR GRTGRAG+ G +  ++ K + K I  
Sbjct: 304 VATDVAARGIDVDDITHVIHYQLPDEIETYTHRSGRTGRAGKSGVSMVILTKSEAKRIKT 363

Query: 360 IEKLIEKKVDW 370
           IEK+I+K  ++
Sbjct: 364 IEKIIQKTFEY 374


>gi|62898149|dbj|BAD97014.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 variant [Homo sapiens]
          Length = 483

 Score =  256 bits (655), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 157/416 (37%), Positives = 234/416 (56%), Gaps = 17/416 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  +V      G  +PTP+Q+  IP++L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPVILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178
             V+I TPGR+ DH        +  I  LV+DEADR+L+ G   F   ++ I + VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+TD L+++       P   E   P ST E ++  ++    +   K A L  L
Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKV--KDAYLVHL 238

Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q  QD  ++   IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK   
Sbjct: 239 IQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSI 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI 
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            + AIE+ I+KK++  + + + +   L ++++      R+   I  ++  FD +K+
Sbjct: 359 LVHAIEEQIKKKLEEFSVEEAEVLQILTQVNV-----VRRECEIKLEAAHFDEKKE 409


>gi|262401641|ref|ZP_06078207.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586]
 gi|262352058|gb|EEZ01188.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586]
          Length = 416

 Score =  256 bits (655), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 135/368 (36%), Positives = 214/368 (58%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADL L P ++ A+ + G+ +PT +Q + IP  L   DV   A TGTGKTA+F +P L  
Sbjct: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIPALQY 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +    R LIL PTRELA QVA+  +   KN  L +  + GG+ ++     L  
Sbjct: 65  LLDFPRRKPGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L++ +  +     IE L++DEADRMLDMGF P +  +++   + +QTL
Sbjct: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTL 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+    ++  + + L++P  ++   P    + I   +         K  LL+++L 
Sbjct: 185 LFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWY-HRADDMPHKVELLKKILT 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   +  I+F   ++ + +L   LEK       I G + Q  R   +S F+EG + +++
Sbjct: 244 EQ--AERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILL 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+PD+ HV NFD+P  A+ Y+HRIGRTGRAG+ G A +LV   D   +  +
Sbjct: 302 ATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARV 361

Query: 361 EKLIEKKV 368
           E+ I+++V
Sbjct: 362 ERYIKEEV 369


>gi|170694034|ref|ZP_02885190.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170141106|gb|EDT09278.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 467

 Score =  256 bits (655), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 146/394 (37%), Positives = 215/394 (54%), Gaps = 18/394 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L    +  +   GYV+ TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 11  FSQLPLPAATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+     V+    ++L PTRELA QV     +  +   N+ V  L GG P   Q   LE 
Sbjct: 71  LDTRNFAVQ---AMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  RG L + ++  LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 128 GAHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVRQCPKERQTL 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K+S+ FL+NPK +++       +  +  +  T  +      LL    + 
Sbjct: 188 LFSATYPEGIVKLSQQFLRNPKEVKLAERHDNTKIRQRFYEVTEDERLHAVGLLLNHYRP 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+     FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 248 VSTLA----FCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L +  ++  +  +E
Sbjct: 304 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGGLE 363

Query: 362 KLIEKKVDWLNGDLSSLN--------PPLEKIDI 387
           +  ++ V+W    LS L         PP+E + I
Sbjct: 364 QAHKRDVEW--HKLSELTPKSNEPLLPPMETLQI 395


>gi|297817166|ref|XP_002876466.1| hypothetical protein ARALYDRAFT_486301 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322304|gb|EFH52725.1| hypothetical protein ARALYDRAFT_486301 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  256 bits (655), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 143/386 (37%), Positives = 216/386 (55%), Gaps = 17/386 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD+ L   +   +    YV+PTP+Q   IP++L + D+   AQTG+GKTA+F  P+++ 
Sbjct: 151 FADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLGQRDLMACAQTGSGKTAAFCFPIISG 210

Query: 63  LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           + K +       +R   P  +IL PTRELA Q+ D  +K+     + V +  GG P   Q
Sbjct: 211 IMKDQHVQRPRGSRTVYPLAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPINQQ 270

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++LERG D+L+ TPGR+ D   R ++ M  I+ L +DEADRMLDMGF P I+ I   + 
Sbjct: 271 LRELERGVDILVATPGRLNDLLERARVSMQRIKFLALDEADRMLDMGFEPQIRKIVEQMD 330

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYS 229
                 RQT+LFSAT   E+Q+++ +F+ N   + V    S+ + I     FV    + S
Sbjct: 331 MPPRGERQTMLFSATFPREIQRLAADFMSNYIFLAVGRVGSSTDLITQRIEFVQESDKRS 390

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
               LL    ++QD     ++F   K+    L + L    F   +IHG+  Q+ R   L 
Sbjct: 391 HLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALR 450

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G A    
Sbjct: 451 SFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFF 510

Query: 350 AKEDIKHIDAIEKLIEKK----VDWL 371
            + + +    + +L+++      +WL
Sbjct: 511 NENNAQMARLLAELMQEANQEVPEWL 536


>gi|299135820|ref|ZP_07029004.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298601944|gb|EFI58098.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 490

 Score =  256 bits (655), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 140/381 (36%), Positives = 216/381 (56%), Gaps = 17/381 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  +S  +   +  AG+V PTP+Q   IP  L+  D+   A TGTGKT SF++PM+  
Sbjct: 32  FADFDISQPLKDRLAAAGFVTPTPVQAGAIPPALEGDDILATASTGTGKTLSFLIPMIDR 91

Query: 63  LEKGRARVRMPRT---------LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
           LE+    +  P T         LIL PTRELA QV D++ K          L+ GG+   
Sbjct: 92  LEE----ISKPSTRGAKNPILALILLPTRELAMQVLDSYFKICPTLKSDAVLVCGGLSEN 147

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q ++L RG  +++ TPGR+ D   R  + + ++++LV+DE DRMLDMGF+P I+ I   
Sbjct: 148 TQLEQLSRGPRLVVATPGRLEDFLRRRSVSLKDVDMLVLDEVDRMLDMGFLPAIKRIVQA 207

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQT+ +SAT+   ++++  +++ NP RIE+ T S  ++ +E   V T  Q  +K A
Sbjct: 208 LPKDRQTMCYSATLDASIREIVRDYVNNPVRIEIGTTSKPSDRVE-LRVYTVMQ-DQKLA 265

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L ++L+ ++     ++F   K     +   LEK G     IHG+  Q  R   L NF  
Sbjct: 266 QLDKMLKEEEGTY--LVFSRTKHGADRIAKKLEKAGHLTEVIHGDRSQSQRTAALRNFTM 323

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G  +++VA+D+AARG+D+  + HV N+D+PN +++++HRIGRTGRAG  G A T V   +
Sbjct: 324 GKARILVATDVAARGIDVSHIAHVVNYDLPNGSDDFVHRIGRTGRAGAKGVATTFVTPLE 383

Query: 354 IKHIDAIEKLIEKKVDWLNGD 374
                 +E+ ++ K  W   D
Sbjct: 384 KGDARKLERELKIKFQWHEAD 404


>gi|58271466|ref|XP_572889.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134115044|ref|XP_773820.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74683279|sp|Q5KBE2|RRP3_CRYNE RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|50256448|gb|EAL19173.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57229148|gb|AAW45582.1| ATP-dependent RNA helicase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 484

 Score =  256 bits (655), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 142/376 (37%), Positives = 221/376 (58%), Gaps = 13/376 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+SP++  A    G+ KP+ IQ + IP  L+  D+ G+AQTG+GKTA+F LP+L  
Sbjct: 40  FADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQT 99

Query: 63  LEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L +       P+    L+L PTRELA Q++      G    +  A+L+GG+   +Q+  L
Sbjct: 100 LWEN------PQPFFALVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIAL 153

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +++ TPGR++DH    K   + +++ LV+DEADR+LD+ F P I  I  ++P  R
Sbjct: 154 SKRPHIIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKILKVIPKER 213

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            T LFSATMT ++ K+    L  P R+EV++  ST  T+   ++    + +K   LL   
Sbjct: 214 NTYLFSATMTTKVAKLQRASLNKPVRVEVSSKYSTVSTLLQHYLLLPLK-NKDAYLL--Y 270

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L ++ +  + +IF     +   L   L + GF    +HG + Q  R+  L+ FK G   +
Sbjct: 271 LANELSSSSMMIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGRSI 330

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RGLDIP V  V N+D+P  +++Y+HR+GRT RAGR GK+ TLV + D++ + 
Sbjct: 331 LVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEILQ 390

Query: 359 AIEKLIEKKVDWLNGD 374
            IE  I KK+   + D
Sbjct: 391 RIESHIGKKMTSFDVD 406


>gi|24373075|ref|NP_717118.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24347255|gb|AAN54562.1|AE015596_2 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 456

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 220/368 (59%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY + T +Q + IPL L   D+   AQTGTGKTA+F LP+L
Sbjct: 1   MKFDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L    A   + R L++ PTRELA QV  N +KY +   L    + GG     Q K +E
Sbjct: 61  EQLAAKPADKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+ D   +  L ++++  LVIDEADRMLD+GF+  I+ +  L+    QT
Sbjct: 121 QGVDILVATPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT +D ++++S   L  P+ + V   ++TA T+E   +       +K  LL +L+ 
Sbjct: 181 MLFSATYSDAVKQLSHKMLNQPQWVNV-AENTTASTVEQ--LVYRVDKRRKAELLSELV- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  ++F + K+   +L   L   G S    HG+  Q +R ++L +FK G ++++V
Sbjct: 237 GRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N ++P  AE+Y+HRIGRTGRAG  G+A + V+  D + +  I
Sbjct: 297 ATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEI 356

Query: 361 EKLIEKKV 368
           E LI +K+
Sbjct: 357 EALIGEKL 364


>gi|120610252|ref|YP_969930.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120588716|gb|ABM32156.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
          Length = 446

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 152/424 (35%), Positives = 227/424 (53%), Gaps = 15/424 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF----V 56
           M FA LGLSP +V A    G+  PTPIQ + IP VL   DV G AQTG+GKTA+F    +
Sbjct: 1   MPFAALGLSPALVHAAGALGFDTPTPIQAQAIPAVLDGGDVLGRAQTGSGKTAAFGLPLL 60

Query: 57  LPMLTILEKGRARV--RMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIP 111
             +L   ++  AR   R P  L+L PTRELAAQV +   +   +     L +A+  GG+ 
Sbjct: 61  QRLLPQAQQAGARPGPRRPGALVLVPTRELAAQVGEVLRDLAGHLPGPRLKIAIACGGVS 120

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q   L  GAD ++ TPGR+LD      L ++ +  LV+DEADR+LD+GF   +Q + 
Sbjct: 121 INPQLMALRGGADAVVATPGRLLDLVEHNALSLSQVRALVLDEADRLLDLGFAEELQRVL 180

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +L+P  RQ LLFSAT    + +++E  L++P RIE+     TA  I    +A  A   ++
Sbjct: 181 ALLPAQRQNLLFSATFEPGVARLAEGLLRDPLRIEIAGAPGTAPDIAQRAIAVEA--PRR 238

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL+QLL  +      ++F   +    ++   L + G      HG + Q +R ++L  F
Sbjct: 239 TQLLKQLLTQEPGWTRVLVFVATQYAAEHVAEKLYQSGIYASPFHGGLSQGTRRQVLQEF 298

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           ++   Q++V +DLAARG+DI  +  V N+D+P  A +Y+HRIGRTGRAG  G A + V  
Sbjct: 299 RDERWQVLVTTDLAARGIDIAGLPAVVNYDLPRAAADYVHRIGRTGRAGASGVAVSFVTP 358

Query: 352 EDIKHIDAIEK---LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           E   H   + +   L    V+ + G   +L P  ++    +   AR    +P  + G   
Sbjct: 359 EAAPHWRLLARRHGLQALPVEQVAGFEVALAPAAQETGATEDAPARPGK-LPPGTGGIKG 417

Query: 409 RKKN 412
           R+ +
Sbjct: 418 RRPS 421


>gi|120435454|ref|YP_861140.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Gramella
           forsetii KT0803]
 gi|117577604|emb|CAL66073.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Gramella
           forsetii KT0803]
          Length = 597

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 223/371 (60%), Gaps = 12/371 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61
           F  LGL   ++ A+ D G+  P+ +Q K+IP++L++  D+  +AQTGTGKTA+F  P++ 
Sbjct: 4   FQKLGLDADLLKAIEDMGFETPSEVQEKSIPILLEKETDLVSLAQTGTGKTAAFGFPLI- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +K  A  +  + LIL PTREL  Q+ +   N+ KY K+ N  V  + GG     Q + 
Sbjct: 63  --QKIDANSKKTQALILSPTRELCLQITNEIKNYSKYKKSLN--VVAVYGGASITDQARS 118

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +ERGA +++ TPGR+ D   R    +++I   V+DEAD ML+MGF   I+ I S  P  +
Sbjct: 119 IERGAQIIVATPGRMQDMIRRRLANISSIGYCVLDEADEMLNMGFYEDIKTILSHTPKEK 178

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +T LFSATM  E+ K+++ F+ +P  I V + +     + H +      +  +   L++L
Sbjct: 179 KTWLFSATMPKEVAKIAKKFMTDPIEITVGSKNKGTSNVSHEYY--LVNHRNRYDALKRL 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +   + + +IFC  K++   +   L + G++  A+HG++ Q  R  ++ +F+   IQ+
Sbjct: 237 ADANPEIFS-VIFCRTKRDTQKVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRSRQIQM 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+ HV N+ +P+  E Y HR GRTGRAG+ G +  +++K +++ I 
Sbjct: 296 LVATDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKQGVSMVIISKSEVRKIR 355

Query: 359 AIEKLIEKKVD 369
            +EK+I++K +
Sbjct: 356 TVEKIIQQKFE 366


>gi|116626579|ref|YP_828735.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116229741|gb|ABJ88450.1| DEAD/DEAH box helicase domain protein [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 422

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 133/370 (35%), Positives = 217/370 (58%), Gaps = 11/370 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L LS ++   +    + +PTPIQ   I   L   D+   AQTGTGKT +F+LP + 
Sbjct: 3   NFSELPLSAQLKSNLAKNNFTEPTPIQSLAIEPALAGKDIVATAQTGTGKTLAFLLPTIQ 62

Query: 62  ILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +L       R P  R LIL PTRELA Q+ +   +  +   +  A+ +GG+   +Q + +
Sbjct: 63  LLS---TEPRQPGVRALILTPTRELALQINEALLQIARGTGIRAAVAVGGLNERSQLRDI 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA++++ TPGR+ D  +RG + +  + +L++DE+DRMLDMGF+P I+ I + +P  RQ
Sbjct: 120 RGGANIVVATPGRLYDFMSRGLINLTTVRMLILDESDRMLDMGFLPTIKRIIAAMPAERQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALLQQL 238
           TLLFSAT+   ++++ E  ++N  RIE+ + S  +E ++ H +        +K  LL+ +
Sbjct: 180 TLLFSATLESSVKQLVETHVRNAVRIELGSISKPSEQVDLHLY---EVDQDRKFGLLEMM 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ +    + ++F   K     L   L + GF   AIHG+  Q  R++ L  F+EG  ++
Sbjct: 237 LREEQ--GSFLVFARTKHGADKLAKKLAQSGFKSAAIHGDRSQNQRIQALKGFQEGYYRV 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+ +  + HV NFD+P   E++IHR+GRTGRAG  G A T   + +   I 
Sbjct: 295 LVATDVAARGIHVEGISHVVNFDLPQVPEDFIHRVGRTGRAGAKGTASTFATRSERSEIG 354

Query: 359 AIEKLIEKKV 368
            IE+ +  K+
Sbjct: 355 RIERTLSVKL 364


>gi|221195199|ref|ZP_03568255.1| dead/deah box helicase [Atopobium rimae ATCC 49626]
 gi|221185102|gb|EEE17493.1| dead/deah box helicase [Atopobium rimae ATCC 49626]
          Length = 457

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 154/436 (35%), Positives = 231/436 (52%), Gaps = 50/436 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL+  ++  V   G+  PTPIQ   IP VL   DV   AQTGTGKTA+FV P L +
Sbjct: 5   FAELGLNEHILTGVETLGFNTPTPIQAAAIPAVLAGKDVVASAQTGTGKTAAFVFPALQV 64

Query: 63  LEKG-------RARVRM--------------------------------PRTLILEPTRE 83
           ++ G       R  V+                                 P+ LI+ PTRE
Sbjct: 65  IDTGFGDEKTDRPEVQCQPQDGQQQSSQQQESQRRRQRGGKRRRNRTRDPQALIVTPTRE 124

Query: 84  LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           LA Q+        K+      ++ GG   + Q   ++ G D+L+ TPGR+LD     ++ 
Sbjct: 125 LATQIERVATTICKSTGQRAVIITGGAKLKRQISAVQAGCDLLVATPGRLLDLIEHHQVN 184

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           + NI++ ++DEADRMLDMGF P ++ I   +P  RQTLLFSAT+   +    +N L +P 
Sbjct: 185 LKNIKVFILDEADRMLDMGFWPSVRRIMDTLPPKRQTLLFSATLPPSIISTIDNMLHDPT 244

Query: 204 RIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQLLQS-QDTMKNGIIFCNQKKNVVN 260
            IE+     TA+T+E   C V       +K  LL+ L++S +   +  ++FC  K  V +
Sbjct: 245 MIEIARTGQTADTVEEHLCPVV----QGQKVELLESLIRSFRPAPERILVFCRTKLRVDS 300

Query: 261 LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNF 320
           +  +L   GF V  +H +  Q +R + L+ F+ GTIQ++VA+D+ +RG+D+  +  V NF
Sbjct: 301 VYAALNNAGFKVDVMHADRPQGARTRALTKFRNGTIQILVATDVMSRGIDVQGIDAVVNF 360

Query: 321 DVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD-WLNGDLSSLN 379
           DVP   E+Y+HRIGRTGRAG  G+AFT +A ++I  +  IE   +  +  W   DL +  
Sbjct: 361 DVPLDPEDYVHRIGRTGRAGSAGQAFTFMAPDEIAPLREIEYFTKSLISTW---DLPNFG 417

Query: 380 PPLEKIDIAQHNHARK 395
               +I + Q+  A K
Sbjct: 418 YQEGRIVLPQNRPATK 433


>gi|261250046|ref|ZP_05942623.1| ATP-dependent RNA helicase RhlB [Vibrio orientalis CIP 102891]
 gi|260939550|gb|EEX95535.1| ATP-dependent RNA helicase RhlB [Vibrio orientalis CIP 102891]
          Length = 433

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 155/423 (36%), Positives = 237/423 (56%), Gaps = 15/423 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FADLGL P++   +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADLGLHPQITEGLEKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT  E    +   PR +I+ PTRELA Q+ ++ E    +  +  AL  GG  ++ Q  K
Sbjct: 71  LLTTSEHEGRKPNQPRAIIMAPTRELAIQIYNDAESLIASTGIKAALAYGGESYDKQLSK 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G DVLI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  +
Sbjct: 131 LEDGVDVLIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + L  LFSAT++  +Q+++   + NP+ + V     T   I+      Y     K ALLQ
Sbjct: 191 ERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEVKTGHRIQEELF--YPSNEHKMALLQ 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R +IL  F +G +
Sbjct: 249 TLIE-EEWPDRAIIFANTKHKCESVWGYLAADGHRVGLLTGDVPQKKRERILEQFTKGDV 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   ++   +
Sbjct: 308 DLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAIN 367

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS-TGFDRRKKNYSS 415
           +  IE+ IE  +   + D S+L   +E  D+      R N P  +++ TG  R     S+
Sbjct: 368 LPPIEEYIEHTIPVSDYDPSAL---IE--DLPAPIRMRSNRPQQRRTNTGGSRSGNRRSN 422

Query: 416 QKS 418
            +S
Sbjct: 423 HRS 425


>gi|256374971|ref|YP_003098631.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
 gi|255919274|gb|ACU34785.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
          Length = 609

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 153/406 (37%), Positives = 227/406 (55%), Gaps = 21/406 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +LG+  ++V A+ +AG  +   IQ  T+PL L   DV G A+TGTGKT  F +P+L  
Sbjct: 54  FTELGVREEIVRALGEAGIERAFAIQELTLPLALAGEDVIGQARTGTGKTLGFGIPLLQR 113

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++  G      P+ L++ PTREL  QV  +     K+ ++ V  + GG P+E Q   L +
Sbjct: 114 VITPGDG---TPQALVVVPTRELCLQVTHDLTDASKHMDVRVLAIYGGRPYEPQIAALRK 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR+LD   +  L++  +  LV+DEAD MLD+GF+P I+ +  +VP  RQT+
Sbjct: 171 GVDVVVGTPGRLLDLAEQRHLVLGKVRSLVLDEADEMLDLGFLPDIERVLRMVPDERQTM 230

Query: 182 LFSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LFSATM   +  ++  FL  P   R E N   +  E  E      +A    K  LL ++L
Sbjct: 231 LFSATMPGPIITLARTFLNQPTHVRAEENDAGAVHERTEQFIYRAHAL--DKVELLARVL 288

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q++D   + +IF   K+    +   + ++GF+V A+HG++ Q +R + L  F+ G I ++
Sbjct: 289 QARDRGLS-MIFTRTKRTAQKVADDMAERGFAVAAVHGDLGQGAREQALRAFRSGKIDVL 347

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAGR G A TLV  ++I     
Sbjct: 348 VATDVAARGIDVEGVTHVVNYQCPEDEKTYVHRIGRTGRAGRTGVAVTLVDWDEIPRWQM 407

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           I        D LN  L   + P+E    + H  A     IP  STG
Sbjct: 408 IS-------DALN--LGKRD-PVETYSTSDHLFAELG--IPAGSTG 441


>gi|161486658|ref|NP_933453.2| ATP-dependent RNA helicase SrmB [Vibrio vulnificus YJ016]
          Length = 408

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 215/368 (58%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P ++ A+ + GY +PT IQ + IP  L+  D+   A TGTGKTA+FVLP L  
Sbjct: 5   FADLDLDPNLLSAIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLPALQY 64

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+    R   P R LIL PTRELA QVAD      KN +L +  + GG+ ++     L  
Sbjct: 65  LQDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTSLNIFTITGGVQYQEHADILAT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR++++    +     IE L++DEADRMLDMGF P +  +++   + +QT+
Sbjct: 125 TQDIVVATPGRLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTM 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  + ++  + + L +P  I+        + I   +    +    K ALL+ ++ 
Sbjct: 185 LFSATLEGKGVEGFTADLLNDPADIDAEPSRRERKKITQWYYRADS-MEHKLALLKDIIN 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +Q   +  I+F   ++ + +L   LE +  +   I G + Q  R   ++ F++G++ +++
Sbjct: 244 NQ--AERTIVFLKTRERLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNVLL 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+PDV HV NFD+P  A+ Y+HRIGRT RAG+ G A ++V   D   +D +
Sbjct: 302 ATDVAARGIDLPDVSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRV 361

Query: 361 EKLIEKKV 368
            + +++ +
Sbjct: 362 ARYVKEDI 369


>gi|297826827|ref|XP_002881296.1| hypothetical protein ARALYDRAFT_902447 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327135|gb|EFH57555.1| hypothetical protein ARALYDRAFT_902447 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 731

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 136/375 (36%), Positives = 208/375 (55%), Gaps = 25/375 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  L+ +++ AV  AGY KP+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPML  
Sbjct: 313 WEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAY 372

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + +            P  +++ PTRELA Q+ +   K+       V  ++GG   E Q  
Sbjct: 373 ISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGL 432

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           K+ +G +++I TPGR++D   R   ++N    +V+DEADRM+DMGF P +  +   +P +
Sbjct: 433 KITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSS 492

Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
                            R T +FSATM   +++++  +L+NP  + + T   T + I   
Sbjct: 493 NLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQH 552

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
            +    + S+K   LQ+LL      K  I+F N KKN  ++  +L+K G+ V  +HG   
Sbjct: 553 VIMM--KESEKFFRLQKLLDELGD-KTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKS 609

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q  R   L  F+     ++VA+D+  RG+DIPDV HV N+D+P   E Y HRIGRTGRAG
Sbjct: 610 QEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAG 669

Query: 341 RHGKAFTLVAKEDIK 355
           + G A + +   D +
Sbjct: 670 KSGVATSFLTLHDTE 684


>gi|194445037|ref|YP_002040904.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194403700|gb|ACF63922.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 457

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 140/355 (39%), Positives = 213/355 (60%), Gaps = 8/355 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L  ++     +   + L+L 
Sbjct: 22  GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VSLFQTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF AQ   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQTLLFSAT  + +  +S   
Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            Q P RIE++T  +    IE  F  T A   +K +LLQ LL SQ    + ++FCN KK+ 
Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHKPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L   G S  A+HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
           N+++    E ++HRIGRT RAG  G A +  A E+ +  + + ++++ K++WLN 
Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369


>gi|28900438|ref|NP_800093.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153839119|ref|ZP_01991786.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|260362342|ref|ZP_05775305.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260877390|ref|ZP_05889745.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260898427|ref|ZP_05906923.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|260902841|ref|ZP_05911236.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|28808749|dbj|BAC61926.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149747374|gb|EDM58342.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|308085134|gb|EFO34829.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308090862|gb|EFO40557.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308107910|gb|EFO45450.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|308111121|gb|EFO48661.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
          Length = 416

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 150/370 (40%), Positives = 220/370 (59%), Gaps = 19/370 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADLGL P +V  +    Y +PTPIQ   IP VL   D+ G A TG+GKTA+F LP+L  
Sbjct: 10  FADLGLIPTLVERLEALEYNQPTPIQSHAIPHVLDGRDMIGGANTGSGKTAAFSLPILQK 69

Query: 62  ILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-----TVALLIGGIPFE 113
           IL++G +   R      LIL PTRELA+QVA N + Y  +Y+L     TVA+  GG+   
Sbjct: 70  ILQQGESNDRRGNFVSHLILVPTRELASQVAYNVKSY--SYHLRDKIKTVAVF-GGVSVN 126

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  G D+++ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  I +L
Sbjct: 127 PQMLALRGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILAL 186

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKC 232
           +P  +QTLLFSAT  +++  ++++ L +P  +EV   S+ A T ++  F     +   K 
Sbjct: 187 LPEKKQTLLFSATFPEKVTALAQHLLNDP--VEVQLQSAEASTLVQRVFSVNKGE---KT 241

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           A+L  L++ Q   +  +IF N K    +L   L K+G +    HG+  Q +R ++L  FK
Sbjct: 242 AVLAHLIK-QHQWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFK 300

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G IQ+++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G   +L+  +
Sbjct: 301 SGEIQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYD 360

Query: 353 DIKHIDAIEK 362
           D  H   IEK
Sbjct: 361 DYHHFKVIEK 370


>gi|270012072|gb|EFA08520.1| hypothetical protein TcasGA2_TC006173 [Tribolium castaneum]
          Length = 702

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 137/365 (37%), Positives = 214/365 (58%), Gaps = 3/365 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA      K++ A++ A Y  PTPIQ + +P  LQ  DV GIAQTG+GKTA+F+ P+L  
Sbjct: 233 FAHFNFDDKLLKAIIKAEYTSPTPIQAQAVPCALQGRDVLGIAQTGSGKTAAFLWPLLKH 292

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +  +        P  LIL PTRELA Q+ +  +K+ + Y+LTV    GG     Q+  L+
Sbjct: 293 VSTQPPVTAGEGPAALILAPTRELAIQIYNEAKKFARVYDLTVVCAYGGGSKWEQSLALK 352

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+++ TPGRI+DH   G   +  +  LV+DEADRM ++GF P ++++ + V   RQT
Sbjct: 353 EGADIVVATPGRIIDHVKGGATNLQRVTFLVLDEADRMFELGFEPQVRSVCNHVRPDRQT 412

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    ++K++++ L +P RI         E +    +    Q  K+  L+  L++
Sbjct: 413 LLFSATFRKRIEKLAKDALNDPVRISQGITGQANEDVTQRVLLMENQQLKRDWLVNNLVE 472

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              +  + ++F  +K +   L + L+ + F    +HG+I+Q  R K+++ FK+    L+V
Sbjct: 473 LL-SAGSVLVFVTKKVDAEQLANDLKVKEFECLLLHGDIEQAERNKVITAFKKKECSLLV 531

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP +  V N+D+    + + HRIGRTGRAG  G A+TL+  +D + +  I
Sbjct: 532 ATDVAARGLDIPHIRTVVNYDIARDIDTHTHRIGRTGRAGNQGTAYTLITPKDKEFVGHI 591

Query: 361 EKLIE 365
            K +E
Sbjct: 592 VKNLE 596


>gi|160876048|ref|YP_001555364.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|160861570|gb|ABX50104.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315268244|gb|ADT95097.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 427

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 141/362 (38%), Positives = 205/362 (56%), Gaps = 10/362 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LG+   ++  + +  YV PT +Q  TIP VL   DV   A TG+GKTA+F +P+L  L +
Sbjct: 14  LGIIAPLLNRLTELAYVSPTSVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVE 73

Query: 66  GRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKLE 120
            +   +     R L+L PTRELA QVAD+F  Y  + N  L +    GG+   AQ + L 
Sbjct: 74  AKTDDKTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQSLR 133

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GADVL+ TPGR+LD  +   + +N +  LV+DEADRML +GF   +  +   +P  +QT
Sbjct: 134 AGADVLVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQT 193

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  +E+++++   L +P  +E    S    TI    +        K ALL  L++
Sbjct: 194 LLFSATFPEEVRELTAKLLNDP--LEYQFQSEQESTIHQRVITV--NRPMKTALLAHLIK 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      +IF + K    +L   L K+G S    HG+  Q +R ++L  FK G I +++
Sbjct: 250 -EHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLI 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V NFD+P    +Y+HRIGR+GRAG  G A TL++ ED  H   I
Sbjct: 309 ATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGVI 368

Query: 361 EK 362
           EK
Sbjct: 369 EK 370


>gi|71279863|ref|YP_269911.1| putative ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea
           34H]
 gi|71145603|gb|AAZ26076.1| putative ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea
           34H]
          Length = 448

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 138/373 (36%), Positives = 212/373 (56%), Gaps = 5/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+D GL   ++  +   G+ +PT IQ + IP  +  HD+   ++TG+GKT +F++P L
Sbjct: 1   MQFSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPAL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L K RA   R PR +IL PTRELA QV      +  N      L++GG  F  Q K L
Sbjct: 61  QRLSKNRALSKRDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TR 178
           ++  + ++ TPGR+ DH  +G   +N +E+L++DEADRMLD+GF   +  I        R
Sbjct: 121 QKEPEFIVATPGRLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQINKAADHRKR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTLLFSAT+   ++ + +   L  PKRI +N   S    I   F       ++K ALLQ 
Sbjct: 181 QTLLFSATLDHAQVNEFATELLTKPKRIAINAGHSEHVDIAKRFYLA-DNLTQKEALLQH 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L ++ + +  IIF   + +   L   L +Q  +  A+ G ++Q  R +I+ +F +G  +
Sbjct: 240 FLVTEKS-QQIIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +DLA+RGLD+ +V HV NFD+P   E ++HRIGRTGRAG  G A +LV   D   +
Sbjct: 299 ILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLSL 358

Query: 358 DAIEKLIEKKVDW 370
             +E  +++K+ +
Sbjct: 359 KNVEAFLQQKISF 371


>gi|262405028|ref|ZP_06081580.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC586]
 gi|262348867|gb|EEY98008.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC586]
          Length = 436

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 144/383 (37%), Positives = 219/383 (57%), Gaps = 11/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FAD GL P+V+  +   G+V  TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            + T   +GRA  + PR +I+ PTRELA Q+ ++ E       L  AL  GG  ++ Q  
Sbjct: 71  LLTTPAAEGRAETQ-PRAIIMAPTRELAIQIYNDAEPLLATTGLKAALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G D+LI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLQSGVDILIGTTGRIIDFYKQRAFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R  +LFSAT++  +Q+++   + NP+ + V     T   I+      Y     K ALL
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELF--YPSNEHKMALL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L      V  + G++ Q+ R +IL  F +G 
Sbjct: 248 QTLVE-EEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   
Sbjct: 307 VDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAI 366

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
           ++ AIE  I+  +   + D S+L
Sbjct: 367 NLPAIESYIDHAIPTSDYDPSAL 389


>gi|256028357|ref|ZP_05442191.1| ATP-dependent RNA helicase [Fusobacterium sp. D11]
 gi|289766283|ref|ZP_06525661.1| ATP-dependent RNA helicase [Fusobacterium sp. D11]
 gi|289717838|gb|EFD81850.1| ATP-dependent RNA helicase [Fusobacterium sp. D11]
          Length = 528

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 139/372 (37%), Positives = 216/372 (58%), Gaps = 16/372 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F DLGLS KV+  +   GY  PTPIQ  TIP +L+   D+ G AQTGTGKTA+F LP++
Sbjct: 9   EFRDLGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E     +   + ++L PTRELA QVA+       +  + V  + GG   + Q K ++
Sbjct: 69  ENFE----NLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR++D   R  L +N+++  ++DEAD ML+MGFI  I+ I +     ++ 
Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFIEDIEKILTFTNEDKRM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
           L FSATM +E+ KV++N ++  + + V +   T +  E  +  V    ++   C ++   
Sbjct: 185 LFFSATMPEEIMKVAKNHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRII--- 241

Query: 239 LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               D  K   GIIFC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I
Sbjct: 242 ----DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKI 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T +  ++ + 
Sbjct: 298 NILVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRR 357

Query: 357 IDAIEKLIEKKV 368
           +  I+K ++K++
Sbjct: 358 LLQIQKAVKKEI 369


>gi|27363997|ref|NP_759525.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus CMCP6]
 gi|27360114|gb|AAO09052.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus CMCP6]
          Length = 408

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 214/368 (58%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P ++ A+ + GY +PT IQ + IP  L+  D+   A TGTGKTA+FVLP L  
Sbjct: 5   FADLDLDPNLLAAIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLPALQY 64

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+    R   P R LIL PTRELA QVAD      KN +L +  + GG+ ++     L  
Sbjct: 65  LQDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTSLNIFTITGGVQYQEHADILAT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR++++    +     IE L++DEADRMLDMGF P +  +++   + +QT+
Sbjct: 125 TQDIVVATPGRLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTM 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  + ++  + + L +P  I+        + I   +         K ALL+ ++ 
Sbjct: 185 LFSATLEGKGVEGFTADLLNDPADIDAEPSRRERKKITQWYYRA-DNMEHKLALLKDIIN 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +Q   +  I+F   ++ + +L   LE +  +   I G + Q  R   ++ F++G++ +++
Sbjct: 244 NQ--AERTIVFLKTRERLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNVLL 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+PDV HV NFD+P  A+ Y+HRIGRT RAG+ G A ++V   D   +D +
Sbjct: 302 ATDVAARGIDLPDVSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRV 361

Query: 361 EKLIEKKV 368
            + +++ +
Sbjct: 362 ARYVKEDI 369


>gi|269962284|ref|ZP_06176636.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
 gi|269832987|gb|EEZ87094.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
          Length = 437

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 145/382 (37%), Positives = 219/382 (57%), Gaps = 9/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FADL L P+V+  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADLDLKPQVIEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT  E    +   PR +I+ PTRELA Q+ ++ E    +  L  AL  GG  ++ Q  K
Sbjct: 71  LLTTPEHEGRKPTQPRAIIMAPTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLAK 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+LI T GRI+D + +    +NNI+ +V+DEADRM D+GFI  I+ +   +P  +
Sbjct: 131 LQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + L  LFSAT++  +Q+++   + NP+ + V     T   I+      Y     K ALLQ
Sbjct: 191 ERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELF--YPSNEDKMALLQ 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ ++     I+F N K    ++   L   G  V  + G++ Q+ R KIL  F  G +
Sbjct: 249 TLIE-EEWPDRAIVFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGEV 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   ++   +
Sbjct: 308 DLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAIN 367

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
           +  IE+ IE  +   + D S+L
Sbjct: 368 LPPIEEYIEHAIPVSDYDASAL 389


>gi|62180220|ref|YP_216637.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224583853|ref|YP_002637651.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238911959|ref|ZP_04655796.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|62127853|gb|AAX65556.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|224468380|gb|ACN46210.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|322714692|gb|EFZ06263.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 457

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 140/355 (39%), Positives = 213/355 (60%), Gaps = 8/355 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L  ++     +   + L+L 
Sbjct: 22  GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF AQ   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQTLLFSAT  + +  +S   
Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            Q P RIE++T  +    IE  F  T A   +K +LLQ LL SQ    + ++FCN KK+ 
Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L   G S  A+HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
           N+++    E ++HRIGRT RAG  G A +  A E+ +  + + ++++ K++WLN 
Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369


>gi|225442260|ref|XP_002279117.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743075|emb|CBI35942.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 146/426 (34%), Positives = 226/426 (53%), Gaps = 29/426 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F D+GL   V+  +  AG+ +PTPIQ +  P+ L+  DV GIA+TG+GKT +++LP +
Sbjct: 100 MNFRDVGLPEYVMQEITKAGFAEPTPIQAQGWPMALKGRDVIGIAETGSGKTLAYLLPAI 159

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                  IL  G      P  L+L PTRELA Q+     K+G +  +    + GG+P   
Sbjct: 160 IHVNAQPILAPGDG----PIVLVLAPTRELAVQIQQEAAKFGASSRIKNTCIHGGVPKGP 215

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L++G +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +
Sbjct: 216 QIRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQI 275

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTL +SAT   E+++++  FL NP ++ + +    A       V   ++  K   L
Sbjct: 276 RPDRQTLYWSATWPKEVEQLARKFLYNPCKVVIGSADLKANHAIRQHVEIVSENQKYNRL 335

Query: 235 LQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           ++ L   +D M  G  +IF + KK    +   L   G+   +IHG+  Q  R  +LS FK
Sbjct: 336 VKLL---EDIMDGGRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFK 392

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +M A+D+AARGLD+ DV  V N+D P   E+Y+HRIGRTGRAG  G A+T     
Sbjct: 393 AGKSPIMTATDVAARGLDVKDVKFVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 452

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           + +    +  ++E+    +  +L+++               R   P P    GF  R + 
Sbjct: 453 NARFAKELITILEEAGQRVAPELAAM--------------GRGAPPPPSGHGGFRDRGRG 498

Query: 413 YSSQKS 418
           + S ++
Sbjct: 499 HGSGRA 504


>gi|182436152|ref|YP_001823871.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178464668|dbj|BAG19188.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 731

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 135/348 (38%), Positives = 208/348 (59%), Gaps = 12/348 (3%)

Query: 31  TIPLVLQRHDVCGIAQTGTGKTASFVLPML---TI---LEKGRAR----VRMPRTLILEP 80
           T+P+ L   DV G A+TGTGKT  F LP+L   T+   +E GRA+       P+ L++ P
Sbjct: 2   TLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRAKPEQLTDAPQALVVVP 61

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TREL  QV ++    GK  N+ V  + GG  +E Q + L++G DV++ TPGR+LD   + 
Sbjct: 62  TRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGVDVIVGTPGRLLDLAGQR 121

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200
           KL +++I  LV+DEAD MLD+GF+P ++ I +++P  RQT+LFSATM   +  ++  ++ 
Sbjct: 122 KLDLSHIRGLVLDEADEMLDLGFLPDVERIITMLPAKRQTMLFSATMPGAVISLARRYMS 181

Query: 201 NPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
            P  I   +P     T+++     Y A    K  +L ++LQ++      +IFC  K+   
Sbjct: 182 QPTHINATSPDDEGTTVKNTVQHVYRAHNMDKPEMLARILQAEG-RGLAMIFCRTKRTAA 240

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
           ++   LEK+GF+  A+HG++ Q +R + L  F+ G + ++V +D+AARG+D+  V HV N
Sbjct: 241 DIAEQLEKRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVVN 300

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           +  P   + Y+HRIGRTGRAG  G A TLV  +DI     I K ++ K
Sbjct: 301 YQSPEDEKTYLHRIGRTGRAGAKGTAITLVDWDDIPRWQLINKALDLK 348


>gi|189239856|ref|XP_974261.2| PREDICTED: similar to CG6418 CG6418-PB [Tribolium castaneum]
          Length = 699

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 137/365 (37%), Positives = 214/365 (58%), Gaps = 3/365 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA      K++ A++ A Y  PTPIQ + +P  LQ  DV GIAQTG+GKTA+F+ P+L  
Sbjct: 233 FAHFNFDDKLLKAIIKAEYTSPTPIQAQAVPCALQGRDVLGIAQTGSGKTAAFLWPLLKH 292

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +  +        P  LIL PTRELA Q+ +  +K+ + Y+LTV    GG     Q+  L+
Sbjct: 293 VSTQPPVTAGEGPAALILAPTRELAIQIYNEAKKFARVYDLTVVCAYGGGSKWEQSLALK 352

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+++ TPGRI+DH   G   +  +  LV+DEADRM ++GF P ++++ + V   RQT
Sbjct: 353 EGADIVVATPGRIIDHVKGGATNLQRVTFLVLDEADRMFELGFEPQVRSVCNHVRPDRQT 412

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    ++K++++ L +P RI         E +    +    Q  K+  L+  L++
Sbjct: 413 LLFSATFRKRIEKLAKDALNDPVRISQGITGQANEDVTQRVLLMENQQLKRDWLVNNLVE 472

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              +  + ++F  +K +   L + L+ + F    +HG+I+Q  R K+++ FK+    L+V
Sbjct: 473 LL-SAGSVLVFVTKKVDAEQLANDLKVKEFECLLLHGDIEQAERNKVITAFKKKECSLLV 531

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP +  V N+D+    + + HRIGRTGRAG  G A+TL+  +D + +  I
Sbjct: 532 ATDVAARGLDIPHIRTVVNYDIARDIDTHTHRIGRTGRAGNQGTAYTLITPKDKEFVGHI 591

Query: 361 EKLIE 365
            K +E
Sbjct: 592 VKNLE 596


>gi|15226155|ref|NP_180929.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|75319077|sp|P93008|RH21_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 21
 gi|1707017|gb|AAC69128.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase
           [Arabidopsis thaliana]
 gi|17473908|gb|AAL38370.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase
           [Arabidopsis thaliana]
 gi|20259792|gb|AAM13243.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase
           [Arabidopsis thaliana]
 gi|330253781|gb|AEC08875.1| DEAD-box ATP-dependent RNA helicase 21 [Arabidopsis thaliana]
          Length = 733

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 136/375 (36%), Positives = 208/375 (55%), Gaps = 25/375 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  L+ +++ AV  AGY KP+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPML  
Sbjct: 315 WEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAY 374

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + +            P  +++ PTRELA Q+ +   K+       V  ++GG   E Q  
Sbjct: 375 ISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGL 434

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           K+ +G +++I TPGR++D   R   ++N    +V+DEADRM+DMGF P +  +   +P +
Sbjct: 435 KITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSS 494

Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
                            R T +FSATM   +++++  +L+NP  + + T   T + I   
Sbjct: 495 NLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQH 554

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
            +    + S+K   LQ+LL      K  I+F N KKN  ++  +L+K G+ V  +HG   
Sbjct: 555 VIMM--KESEKFFRLQKLLDELGE-KTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKS 611

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q  R   L  F+     ++VA+D+  RG+DIPDV HV N+D+P   E Y HRIGRTGRAG
Sbjct: 612 QEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAG 671

Query: 341 RHGKAFTLVAKEDIK 355
           + G A + +   D +
Sbjct: 672 KSGVATSFLTLHDTE 686


>gi|116750069|ref|YP_846756.1| DEAD/DEAH box helicase domain-containing protein [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699133|gb|ABK18321.1| DEAD/DEAH box helicase domain protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 533

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 213/373 (57%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L   ++  + DA +   TPIQ   +P  L   D  G AQTGTGKTA F++ MLT 
Sbjct: 118 FHDLDLPAPILRGIADAEFRYCTPIQAALLPHTLNGLDAAGRAQTGTGKTAVFIITMLTQ 177

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +  A    R   PR L+L PTRELA Q+        ++       + GG+ +E Q ++
Sbjct: 178 FLRNPAPEGRRKGTPRALVLAPTRELALQIEKETHLLSRHTPFKSVAIFGGMDYEKQKRR 237

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           L     D+++ TPGR+LD   +G L ++ +EILVIDEADRMLDMGFIP +Q I    P  
Sbjct: 238 LTGEVIDIVVATPGRLLDFKRQGDLHLSKVEILVIDEADRMLDMGFIPDVQRIIHYTPPK 297

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT+LFSAT+T E+ + +  + +NP  +E+       +T+    + T     +K  LL
Sbjct: 298 AQRQTMLFSATLTAEVTRFASQWTRNPVTVEIEPEQVAVDTVNQRVLIT--TIDEKFTLL 355

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             ++  Q+ +   I+F N++     L   L   G S   + G +DQ+ R+K L  F+ G 
Sbjct: 356 FNMITRQN-LDRVIVFTNRRDQARRLTERLGSYGISCALLSGEVDQKKRVKTLEEFRNGK 414

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+AARGL +  V HVFN+++P   E+Y+HRIGRTGRAG  G + +  +++D  
Sbjct: 415 IRVLVATDVAARGLHVEAVSHVFNYNMPMDPEDYVHRIGRTGRAGTSGISVSFASEDDSF 474

Query: 356 HIDAIEKLIEKKV 368
            I A+EK +  ++
Sbjct: 475 LIPALEKYLGHEI 487


>gi|108757460|ref|YP_630529.1| ATP-dependent RNA helicase [Myxococcus xanthus DK 1622]
 gi|108461340|gb|ABF86525.1| ATP-dependent RNA helicase [Myxococcus xanthus DK 1622]
          Length = 418

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 141/366 (38%), Positives = 214/366 (58%), Gaps = 8/366 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS + + A+  A + +PTPIQ + IP  L   DV G A TGTGKTA++VLP++  
Sbjct: 5   FDNLGLSRETLGALRRARFTQPTPIQQQAIPPALAGRDVIGCAATGTGKTAAYVLPLVER 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +  +     L+L PTREL  Q+A+    + +   LT A +IGG    AQ   L+  
Sbjct: 65  LAGKKGTL----ALVLAPTRELVQQIAEPVRFFAEPRRLTHATVIGGEDMGAQVNALKTL 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
              +I TPGR++D      +   ++E LV+DEADRMLDMGF+P ++ I + +P  RQTLL
Sbjct: 121 PSFVIATPGRLVDLMENTAIRFPHLEALVLDEADRMLDMGFLPQLERIVAHLPRRRQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  ++ + +++ L  P R+EV    + AE  E      + +  +K  LL  LL +Q
Sbjct: 181 FSATLGPDVTRFAKSRLYKPVRLEVTRSGTPAERAEQRLY--FLRPEEKTPLLLTLL-AQ 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D+    ++F   K+ V  +  +L++ G     +H +  Q  R + +  F+ GT + +VA+
Sbjct: 238 DSA-TALVFTRAKERVDKVQRALQRAGHRTAVLHADRTQNQRKQAMEGFRNGTYRCLVAT 296

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+ DVGHV N+D+P+ AE+Y+HRIGRT RA   G A T     + + I  IE 
Sbjct: 297 DIAARGLDVEDVGHVINYDLPHAAEDYVHRIGRTARAAASGVASTFATTREGQVITRIEH 356

Query: 363 LIEKKV 368
           L+  ++
Sbjct: 357 LMRSEI 362


>gi|323494189|ref|ZP_08099304.1| ATP-dependent RNA helicase RhlB [Vibrio brasiliensis LMG 20546]
 gi|323311583|gb|EGA64732.1| ATP-dependent RNA helicase RhlB [Vibrio brasiliensis LMG 20546]
          Length = 434

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 155/424 (36%), Positives = 234/424 (55%), Gaps = 16/424 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FADLGL P++   +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADLGLHPQITEGLEKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTAAFNH 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT  E    +   PR +I+ PTRELA Q+ ++ E    +  +  AL  GG  ++ Q  K
Sbjct: 71  LLTTSEHEGRKPNQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLAK 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G DVLI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  +
Sbjct: 131 LEDGVDVLIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + L  LFSAT++  +Q+++   + NP+ + V     T   I+      Y     K ALLQ
Sbjct: 191 ERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEVKTGHRIQEELF--YPSNEHKMALLQ 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R +IL  F  G +
Sbjct: 249 TLIE-EEWPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKRERILDQFTRGEV 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   ++   +
Sbjct: 308 DLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAIN 367

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK--STGFDRRKKNYS 414
           +  IE+ IE  +   + D S+L       D+      R N P  Q+  +TG  R     S
Sbjct: 368 LPPIEEYIEHTIPVSDYDPSALIQ-----DLPAPIRMRSNRPQQQRRTNTGGSRSGNRRS 422

Query: 415 SQKS 418
           + +S
Sbjct: 423 NHRS 426


>gi|109124055|ref|XP_001115617.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Macaca
           mulatta]
          Length = 527

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 157/416 (37%), Positives = 233/416 (56%), Gaps = 17/416 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAELGLSSWLVAQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178
             V+I TPGR+ DH        +  I  LV+DEADR+L+ G   F   ++ I + VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+TD L+++       P   E   P ST E ++  ++    +   K A L  L
Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKV--KDAYLVHL 238

Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q  QD  ++   IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK   
Sbjct: 239 IQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSI 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI 
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            + AIE+ I+KK++  + + + +   L ++++      R+   I  ++  FD +K+
Sbjct: 359 LVHAIEEQIKKKLEEFSVEEAEVLQILTQVNV-----VRRECEIKLEAAHFDEKKE 409


>gi|168462889|ref|ZP_02696820.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195634348|gb|EDX52700.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 457

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 140/355 (39%), Positives = 213/355 (60%), Gaps = 8/355 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L  ++     +   + L+L 
Sbjct: 22  GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF AQ   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQTLLFSAT  + +  +S   
Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            Q P RIE++T  +    IE  F  T A   +K +LLQ LL SQ    + ++FCN KK+ 
Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L   G S  A+HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
           N+++    E ++HRIGRT RAG  G A +  A E+ +  + + ++++ K++WLN 
Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369


>gi|297202208|ref|ZP_06919605.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
 gi|297148059|gb|EDY61279.2| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 723

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 136/350 (38%), Positives = 210/350 (60%), Gaps = 16/350 (4%)

Query: 31  TIPLVLQRHDVCGIAQTGTGKTASFVLPML---TI---LEKGRAR----VRMPRTLILEP 80
           T+P+ L   DV G A+TGTGKT  F LP+L   T+   +E GRA+       P+ L++ P
Sbjct: 2   TLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRAKPEDLTDAPQALVVVP 61

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TREL  QV ++ +  GK  N+ V  + GG  +E Q + L++G DV+I TPGR+LD   + 
Sbjct: 62  TRELCTQVTNDLQTAGKVRNVRVLAIYGGRAYEPQVEALKKGVDVVIGTPGRLLDLAGQK 121

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200
           KL +++I+ LV+DEAD MLD+GF+P ++ I +L+P  RQT+LFSATM   +  ++  ++ 
Sbjct: 122 KLNLSHIKALVLDEADEMLDLGFLPDVEKIINLLPARRQTMLFSATMPGAVISLARRYMS 181

Query: 201 NPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQSQDTMKNGI--IFCNQKKN 257
            P  I   +P     T+ +     Y A    K  ++ ++LQ++     G+  +FC  K+ 
Sbjct: 182 QPTHINATSPDDAGRTVANTKQHVYRAHNMDKPEMVARILQAEG---RGLVMVFCRTKRT 238

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
             +L   L+++GF+  A+HG++ Q +R + L  F+ G + ++V +D+AARG+D+  V HV
Sbjct: 239 AADLADQLKQRGFAAGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHV 298

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
            N+  P   + Y+HRIGRTGRAG  G A TLV  +DI     I K +E K
Sbjct: 299 INYQCPEEEKTYLHRIGRTGRAGAKGIAITLVDWDDIPRWQLINKALELK 348


>gi|168260141|ref|ZP_02682114.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205350697|gb|EDZ37328.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 457

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 140/355 (39%), Positives = 213/355 (60%), Gaps = 8/355 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L  ++     +   + L+L 
Sbjct: 22  GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF AQ   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQTLLFSAT  + +  +S   
Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            Q P RIE++T  +    IE  F  T A   +K +LLQ LL SQ    + ++FCN KK+ 
Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L   G S  A+HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
           N+++    E ++HRIGRT RAG  G A +  A E+ +  + + ++++ K++WLN 
Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369


>gi|187779626|ref|ZP_02996099.1| hypothetical protein CLOSPO_03222 [Clostridium sporogenes ATCC
           15579]
 gi|187773251|gb|EDU37053.1| hypothetical protein CLOSPO_03222 [Clostridium sporogenes ATCC
           15579]
          Length = 481

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 224/368 (60%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  LS +++ ++   GY  P+ +Q + IPL+L+  D+   ++TG+GKTA+F +P  
Sbjct: 4   LTFENYKLSDEILKSLRKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIP-- 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + EK     + P+ L+L PTRELA Q+ +          L    + G  P   Q ++L+
Sbjct: 62  -VCEKLELEEKDPQVLVLTPTRELALQIKEEISNIALYKRLRCTAIFGKQPMSLQKRELK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR LDH  R  L +  I+  ++DEAD ML+MGFI  ++ +   +P  R T
Sbjct: 121 QRVHLVVGTPGRTLDHIERENLNLKKIKYFILDEADEMLNMGFIDQVEAVIKRLPKDRVT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ D+++ + + ++ NP+ I +N  + T +TI  C+     +   K +LLQ+++ 
Sbjct: 181 MLFSATIPDKIENLCKRYMNNPENININPENITTKTINQCYYEVEGK--NKFSLLQKII- 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++ + N IIFCN ++ V  +   ++K+GF+  A+HG ++Q+ R++ +  FK+G  Q +V
Sbjct: 238 YKEVVDNSIIFCNTREKVDEILKYMKKEGFNAIALHGGMEQKDRLETMKKFKQGQFQFLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ I ++ HV N+++P   E+Y+HRIGRTGRAG+ G A T +    ++ +  I
Sbjct: 298 CTDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFLKDI 357

Query: 361 EKLIEKKV 368
           E  I+K++
Sbjct: 358 EDYIDKEI 365


>gi|153826515|ref|ZP_01979182.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-2]
 gi|149739695|gb|EDM53902.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-2]
          Length = 423

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 135/368 (36%), Positives = 215/368 (58%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA+L L P ++ A+ + G+ +PT +Q + IP  L   DV   A TGTGKTA+FV+P L  
Sbjct: 5   FANLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +    R LIL PTRELA QVA+  +   KN  L +  + GG+ ++     L  
Sbjct: 65  LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L++ +  +     IE L++DEADRMLDMGF P +  +++   + +QTL
Sbjct: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTL 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+    ++  + + L++P  ++   P    + I   +         K  LL+++L 
Sbjct: 185 LFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWY-HRADDMPHKVELLKKILT 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   +  I+F   ++ + +L   LEK       I G + Q  R   +S F+EG + +++
Sbjct: 244 EQ--AERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILL 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+PD+ HV NFD+P  A+ Y+HRIGRTGRAG+ G A +LV   D   +  +
Sbjct: 302 ATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARV 361

Query: 361 EKLIEKKV 368
           E+ I+++V
Sbjct: 362 ERYIKEEV 369


>gi|16764999|ref|NP_460614.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167992838|ref|ZP_02573934.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|197262502|ref|ZP_03162576.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|16420182|gb|AAL20573.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|197240757|gb|EDY23377.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205329063|gb|EDZ15827.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261246847|emb|CBG24663.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993587|gb|ACY88472.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158183|emb|CBW17681.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912646|dbj|BAJ36620.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224281|gb|EFX49344.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129924|gb|ADX17354.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988542|gb|AEF07525.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 457

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 140/355 (39%), Positives = 213/355 (60%), Gaps = 8/355 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L  ++     +   + L+L 
Sbjct: 22  GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF AQ   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQTLLFSAT  + +  +S   
Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            Q P RIE++T  +    IE  F  T A   +K +LLQ LL SQ    + ++FCN KK+ 
Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L   G S  A+HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
           N+++    E ++HRIGRT RAG  G A +  A E+ +  + + ++++ K++WLN 
Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369


>gi|167763057|ref|ZP_02435184.1| hypothetical protein BACSTE_01423 [Bacteroides stercoris ATCC
           43183]
 gi|167699397|gb|EDS15976.1| hypothetical protein BACSTE_01423 [Bacteroides stercoris ATCC
           43183]
          Length = 430

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 223/371 (60%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ K+IP++L+  D+  +AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELNLNDNVLEALDAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             L +G         +++ PTRELA Q+    E +     ++   + GG   + FE Q +
Sbjct: 61  NKLSEGGHPEDSINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q++++N L NP  +++       + ++  ++    Q   K  +++ 
Sbjct: 181 RQTIMFSATMPAKIQQLAQNILHNPAEVKLAVSKPAEKIVQAAYICYENQ---KLGIIRS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   Q T +  IIF + K  V  +  +L++   +V  +H +++Q  R +++  FK G I 
Sbjct: 238 LFAEQ-TPERVIIFASSKLKVKEVAKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V +++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNF 356

Query: 358 DAIEKLIEKKV 368
            +IE  +EK++
Sbjct: 357 KSIENFLEKEI 367


>gi|296328514|ref|ZP_06871033.1| DEAD/DEAH box family ATP-dependent RNA helicase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296154323|gb|EFG95122.1| DEAD/DEAH box family ATP-dependent RNA helicase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 528

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 138/372 (37%), Positives = 216/372 (58%), Gaps = 16/372 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F +LGLS KV+  +   GY  PTPIQ  TIP +L+   D+ G AQTGTGKTA+F LP++
Sbjct: 9   EFRELGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E     +   + ++L PTRELA QVA+       +  + V  + GG   + Q K ++
Sbjct: 69  ENFE----NLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR++D   R  L +N+++  ++DEAD ML+MGF+  I+ I +     ++ 
Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
           L FSATM DE+ KV++N ++  + + V +   T +  E  +  V    ++   C ++   
Sbjct: 185 LFFSATMPDEIMKVAKNHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRII--- 241

Query: 239 LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               D  K   GIIFC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I
Sbjct: 242 ----DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKI 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T +  ++ + 
Sbjct: 298 NILVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRR 357

Query: 357 IDAIEKLIEKKV 368
           +  I+K ++K++
Sbjct: 358 LLQIQKAVKKEI 369


>gi|197336247|ref|YP_002156253.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197317737|gb|ACH67184.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 421

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 140/369 (37%), Positives = 216/369 (58%), Gaps = 13/369 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGL   ++  + +  Y +PTPIQ + IP VL   D+   A TG+GKTA+F LP+L 
Sbjct: 9   NFTELGLISPLLARLTELEYQQPTPIQAQAIPSVLAGRDLIAGANTGSGKTATFALPLLQ 68

Query: 62  -ILEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113
            I E   ++ +  +      L+L PTRELA QVAD+ + Y  ++N  +    + GG+   
Sbjct: 69  QIAELQSSKAQASKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGAIKTVSVFGGVSVN 128

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  GAD+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  + +L
Sbjct: 129 TQMLALRGGADILVATPGRLLDLISSNAVKLDKVKTLVLDEADRMLSLGFTEELNELLAL 188

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
            P  +QTLLFSAT  +E+Q +++  L NP  +E+   S+ A T+    +       +K +
Sbjct: 189 APKQKQTLLFSATFPEEVQTLTQALLNNP--VEIQLQSADASTVVQRVLTV--NKGEKTS 244

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +L  L+Q ++  +  +IF N K    +L   L K+G +    HG+  Q +R ++L  FK 
Sbjct: 245 VLAHLIQ-KNQWRQALIFVNAKNACNHLADKLAKRGIAAEVFHGDKGQGARTRVLEAFKA 303

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I +++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G A +L+  ED
Sbjct: 304 GEIDVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLALSLIDYED 363

Query: 354 IKHIDAIEK 362
             H   IEK
Sbjct: 364 YHHFKIIEK 372


>gi|209809352|ref|YP_002264890.1| putative ATP-dependent RNA helicase RhlE [Aliivibrio salmonicida
           LFI1238]
 gi|208010914|emb|CAQ81319.1| putative ATP-dependent RNA helicase RhlE [Aliivibrio salmonicida
           LFI1238]
          Length = 442

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 141/370 (38%), Positives = 216/370 (58%), Gaps = 15/370 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGL   ++  + +  Y +PTPIQ + IP VL   D+   A TG+GKTA+F LP+L 
Sbjct: 22  NFTELGLITPLLARLTELEYQQPTPIQAQAIPSVLAGRDLIAGANTGSGKTATFALPILQ 81

Query: 62  ILEKGR------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113
            L + +       +      LIL PTRELA QVAD+ + Y  ++N  +    + GG+   
Sbjct: 82  QLHEDKPFSTKSGKGNYVTGLILVPTRELAKQVADSIKSYAVHFNGAIKTVAVFGGVSAN 141

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  G D+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  +  L
Sbjct: 142 TQMLALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELSALLDL 201

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKC 232
           +P  +QTLLFSAT  +++Q +++  L +P  IE+   S+ A T ++  F     +   K 
Sbjct: 202 LPKQKQTLLFSATFPEQVQTLTQELLNDP--IEIQVQSADASTLVQRVFTVNKGE---KT 256

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           ALL  L++ Q+  +  +IF N K +  +L   L K+G +    HG+  Q +R +IL  FK
Sbjct: 257 ALLAHLIK-QNEWRQALIFVNAKNSCEHLADKLSKRGITAEVFHGDKGQGARTRILEAFK 315

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G I++++A+++AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G A +L+  E
Sbjct: 316 LGEIEVLIATNIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHE 375

Query: 353 DIKHIDAIEK 362
           D  H   IEK
Sbjct: 376 DYHHFKIIEK 385


>gi|200389990|ref|ZP_03216601.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199602435|gb|EDZ00981.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 457

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 140/355 (39%), Positives = 213/355 (60%), Gaps = 8/355 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L  ++     +   + L+L 
Sbjct: 22  GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF AQ   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQTLLFSAT  + +  +S   
Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            Q P RIE++T  +    IE  F  T A   +K +LLQ LL SQ    + ++FCN KK+ 
Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L   G S  A+HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 EAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
           N+++    E ++HRIGRT RAG  G A +  A E+ +  + + ++++ K++WLN 
Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369


>gi|145352866|ref|XP_001420755.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580990|gb|ABO99048.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 466

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 143/376 (38%), Positives = 222/376 (59%), Gaps = 22/376 (5%)

Query: 3   FADLGLSPKVV--CAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           F DLG+  ++   CA +  G+  PTPIQ   +P  L+  DV G+AQTG+GKT +F LP+L
Sbjct: 19  FEDLGVCAELADACAKI-MGWRAPTPIQCAAVPEALRERDVIGLAQTGSGKTGAFALPIL 77

Query: 61  TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      +  P+   +LIL PTRELA Q+A+  E  G       A L+GG+    Q  
Sbjct: 78  QSL------LDAPQGFHSLILSPTRELAMQIAEQIETLGAGVGARTATLVGGVDMTTQAI 131

Query: 118 KLERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           KL +   V++ TPGR++DH    K   +  +++LV+DEADR+L++ F   I  I  ++P 
Sbjct: 132 KLGKRPHVIVGTPGRVVDHLENTKGFSLRALKVLVLDEADRLLNLDFEEEIDKILRVIPS 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R+T LFSATMT+++ K+    L++P ++EV+   ST E+++  ++   A++ K C    
Sbjct: 192 DRRTQLFSATMTNKVAKLQRACLRDPVKVEVSAKYSTVESLKQHYLFIPAKH-KDC--YA 248

Query: 237 QLLQSQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
             L ++ +    I+F   C+  + +  +  +L   GF    IHG + Q  R+  L  FK 
Sbjct: 249 TYLFNELSASTLIVFARTCDATRKLALIARNL---GFGAVPIHGQMSQPKRIAALQKFKS 305

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+D+A+RGLDIP V  V N+DVP  +++Y+HR+GRT RAGR G A T+V + D
Sbjct: 306 GERNILIATDVASRGLDIPSVDVVINYDVPQNSKDYVHRVGRTARAGRSGLAVTMVTQYD 365

Query: 354 IKHIDAIEKLIEKKVD 369
           ++    IE+LI KK+D
Sbjct: 366 VELYQKIERLINKKLD 381


>gi|323203477|gb|EFZ88501.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
          Length = 380

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 140/355 (39%), Positives = 211/355 (59%), Gaps = 8/355 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F    L +L +    +   + L+L 
Sbjct: 22  GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAF---GLGLLHRIDVTLFQTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF AQ   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQTLLFSAT  D +  +S   
Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPETRQTLLFSATWPDAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            Q P RIE++T  +    IE  F  T     +K +LLQ LL SQ    + ++FCN KK+ 
Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSVH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L   G S  A+HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
           N+++    E ++HRIGRT RAG  G A +  A E+ +  + + ++++ K++WLN 
Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369


>gi|302695203|ref|XP_003037280.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
 gi|300110977|gb|EFJ02378.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
          Length = 771

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 143/361 (39%), Positives = 210/361 (58%), Gaps = 5/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  ++ A+   G+ KPTPIQ  TIP+ L   DV G A TG+GKTA+F +PML  
Sbjct: 181 FLTMNLSRPILKALTTLGFTKPTPIQAATIPVALLGKDVVGNAVTGSGKTAAFTIPMLER 240

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   EKG+ +    R L+L PTRELA Q  +  +K   + ++ VAL++GG+  ++Q   L
Sbjct: 241 LLYREKGK-KAAATRCLVLVPTRELAVQCYEVGKKLAAHTDIEVALIVGGLSLKSQEATL 299

Query: 120 ERGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
               D++I TPGR++DH  N     ++N+++LV+DEADRML  GF   +  I    P +R
Sbjct: 300 RARPDIVIATPGRLIDHIHNSPSFTLDNLDVLVLDEADRMLSDGFADELTEIIKACPKSR 359

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATMTD + ++    L  P R+ V+   STA+ +   FV   A   K+ + L   
Sbjct: 360 QTMLFSATMTDSVDELVRMSLDKPVRLFVDPKRSTAKGLIQEFVRVRAGREKERSPLLVA 419

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L ++      IIF   KK    L       G     +HG++ Q  R+  L  F++GT+  
Sbjct: 420 LCTRTFKTRVIIFVRSKKLAHQLRIVFGLVGLKCGELHGDLSQEQRLNALQQFRDGTVDY 479

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+DLA+RGLDI  V  V N+D+P +   Y+HR+GRT RAG+ G++ TLV + D K + 
Sbjct: 480 LMATDLASRGLDIKGVETVINYDMPGQLAQYLHRVGRTARAGKKGRSVTLVGEGDRKMLK 539

Query: 359 A 359
           A
Sbjct: 540 A 540


>gi|301064349|ref|ZP_07204778.1| DbpA RNA binding domain protein [delta proteobacterium NaphS2]
 gi|300441525|gb|EFK05861.1| DbpA RNA binding domain protein [delta proteobacterium NaphS2]
          Length = 595

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 132/365 (36%), Positives = 225/365 (61%), Gaps = 8/365 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59
           MDF  LGL  +++ AV D GY +PTPIQ K IP +L+ R D+ G+AQTGTGKTA++ LP+
Sbjct: 1   MDFETLGLKARLIKAVQDLGYKEPTPIQKKAIPALLENRQDLVGLAQTGTGKTAAYGLPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
           L +++   +RV+    LIL PTREL  Q++ +  +Y +   +  +  + GG   E Q ++
Sbjct: 61  LQLIDFSTSRVQ---GLILCPTRELCFQISKDLARYSRYVEHAKIVAVYGGAGMEPQIRQ 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +++GA ++  TPGR+LD   RG + +++I+ +V+DEAD ML MGF   +  I +  P  +
Sbjct: 118 IKKGAQIITATPGRLLDLIKRGIVNLHDIDYVVLDEADEMLTMGFQEDLDEILAQTPPEK 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           ++ LFSATMT  + ++S+N+L++P  I V   +S A  I H F     + ++  AL + +
Sbjct: 178 RSWLFSATMTAPVARISQNYLKDPLEITVGRKNSGASNISH-FKYVVLEKNRYPALKRII 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               D     ++FC  +K    +   L + G++  ++HG++ Q  R  ++  F+E ++Q+
Sbjct: 237 DYHPDIF--SLVFCRTRKETQAVAEKLIRDGYNAESLHGDLSQTQRDYVMGRFRERSLQI 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ D+ HV ++++P+    Y HR GRT RAG+ G +  L+   + + + 
Sbjct: 295 LVATDVAARGLDVDDISHVIHYNLPDEPGAYTHRSGRTARAGKSGASIVLMNTRENRKLA 354

Query: 359 AIEKL 363
            +E++
Sbjct: 355 HVEQV 359


>gi|118618015|ref|YP_906347.1| ATP-dependent RNA helicase RhlE [Mycobacterium ulcerans Agy99]
 gi|118570125|gb|ABL04876.1| ATP-dependent RNA helicase RhlE [Mycobacterium ulcerans Agy99]
          Length = 517

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 145/377 (38%), Positives = 219/377 (58%), Gaps = 18/377 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+  ++V A+ +     P  IQ  T+PL L   D+ G A+TG GKT +F +P+L  
Sbjct: 15  FAELGVRDEIVRALGERDIEGPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQR 74

Query: 63  LEKG---RARVRMPRTLILEPTRELAAQVADNFE---KY-------GKNYNLTVALLIGG 109
           +  G   R     PR L++ PTREL  QV ++     KY       G    L+V  + GG
Sbjct: 75  VSSGTGVRPLTGAPRALVVVPTRELCLQVTEDLAVAAKYLTATTETGDQRPLSVVSIYGG 134

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
             +E Q + L  GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+ 
Sbjct: 135 RAYEPQIEALRAGADVVVGTPGRLLDLSQQGHLQLGGLYVLVLDEADEMLDLGFLPDIER 194

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQ 227
           I   +P  RQ++LFSATM D +  ++  F+  P  I    P S A  +T E      +A 
Sbjct: 195 ILRQIPADRQSMLFSATMPDPIITLARTFMIQPTHIRAEAPHSLAVHDTTEQFVYRAHAL 254

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
              K  L+ ++LQ+++     +IF   K+    +   L ++GF+V A+HG++ Q +R K 
Sbjct: 255 --DKVELVTRVLQARERGAT-MIFTRTKRTAQKVADELNERGFAVGAVHGDLGQVAREKA 311

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L +F+ G++ ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G A T
Sbjct: 312 LKSFRRGSVNVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVT 371

Query: 348 LVAKEDIKHIDAIEKLI 364
           LV  +++     I+K +
Sbjct: 372 LVDWDELPRWTMIDKAL 388


>gi|148652579|ref|YP_001279672.1| DEAD/DEAH box helicase domain-containing protein [Psychrobacter sp.
           PRwf-1]
 gi|148571663|gb|ABQ93722.1| DEAD/DEAH box helicase domain protein [Psychrobacter sp. PRwf-1]
          Length = 383

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 144/376 (38%), Positives = 229/376 (60%), Gaps = 15/376 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FADL LS  ++ +V D G+ + T IQ + +P  L   D  G AQTGTGKTA+F++ ++  
Sbjct: 7   FADLSLSDSILRSVNDLGFTELTGIQAQILPHTLAGQDAIGQAQTGTGKTATFLITIIEA 66

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +L++  A   M     PR LIL PTRELA Q+ D+     K+ +L    ++GGI ++ Q 
Sbjct: 67  LLKRPFADDEMRYIGEPRALILAPTRELANQIYDDAIALTKHTSLHSVCVMGGIDYDKQI 126

Query: 117 KKLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             L++   D+LI TPGR++D   +G + ++ IE  V+DEADRMLDMGFIP I+ +   +P
Sbjct: 127 AALDKSYTDILIATPGRLIDLIYKGHVFLDRIEAFVLDEADRMLDMGFIPDIKRLMRYMP 186

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKC 232
               RQ+LLFSAT   ++  ++  +L NP  +E+     T++ +E H ++ T A   K  
Sbjct: 187 PNTDRQSLLFSATFNQDVMNLAYQWLMNPVFVEIEPEHKTSDLVEQHFYLLTEA--DKHQ 244

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           AL+Q L Q +   K  I+F N+K  V  L   L     +V  + G++DQ  R + L  FK
Sbjct: 245 ALIQILAQPE--TKKVIVFANRKDQVKRLYTKLSAD-HNVVMLSGDVDQAKRERYLDKFK 301

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G  +++VA+D+A RG+ + D+ HV N+ +P++ ++Y+HRIGRTGRAG+ G + + V+++
Sbjct: 302 NGNAKVLVATDVAGRGIHVDDISHVVNYTLPDQPDDYVHRIGRTGRAGQKGISISFVSED 361

Query: 353 DIKHIDAIEKLIEKKV 368
           D  ++ AIE  +++ +
Sbjct: 362 DAFNLPAIEAHLDRHL 377


>gi|300721423|ref|YP_003710694.1| putative ATP-dependent helicase with nucleoside triP hydrolase
           domain [Xenorhabdus nematophila ATCC 19061]
 gi|297627911|emb|CBJ88457.1| putative ATP-dependent helicase with nucleoside triP hydrolase
           domain [Xenorhabdus nematophila ATCC 19061]
          Length = 427

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 221/373 (59%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKV+ A+   G+   TPIQ  T+P  ++  DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVLGALDKKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKTLAFLASTFHY 70

Query: 63  L---EKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L     G+ R +  PR LI+ PTRELA Q+  + ++  +   L + L  GG  ++ Q K 
Sbjct: 71  LLTHPAGKERKINQPRALIMAPTRELAVQIYSDAKELAEVTGLKMGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
           LE G D++I T GR++D+  +G + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDIVIGTTGRLIDYAKQGHIHLGAIQVVVLDEADRMYDLGFIKDIRWLFRRIPAAT 190

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
            R  LLFSAT++  +++++   + NP+ +EV     T   I E  F   Y    +K  LL
Sbjct: 191 ERLNLLFSATLSYRVRELAFEQMNNPEYVEVEPLQKTGHRIREELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q LL+ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLLE-EEWPDRCIIFANTKHRCEDIWTHLAADGHRVGLLTGDVAQKKRLRILEEFSLGN 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E + 
Sbjct: 307 LDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYVL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ +IE+ I+ ++
Sbjct: 367 NLPSIEEYIQHQI 379


>gi|224078085|ref|XP_002191498.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Taeniopygia
           guttata]
          Length = 770

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 162/468 (34%), Positives = 253/468 (54%), Gaps = 26/468 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F+LP+L
Sbjct: 179 LSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVL 238

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++  +  N+T  L +GG+  + Q   L 
Sbjct: 239 ERLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSNVTTCLAVGGLDVKTQEAALR 298

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            G D+LI TPGR++DH  N     ++++E+L++DEADRMLD  F   ++ I  L    RQ
Sbjct: 299 SGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSHHRQ 358

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQL 238
           T+LFSATMT+E++ ++   L+NP RI VN+ +  A  +   F+     +   + A++  L
Sbjct: 359 TMLFSATMTEEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVTAL 418

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEK-QGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L    T ++ ++   Q K   +  H L    G  V  +HGN+ Q  R++ L  FK+  I 
Sbjct: 419 LTR--TFQDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQTQRLESLRRFKDEQID 476

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAG+ G++ +LV +E+ K +
Sbjct: 477 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGKAGRSVSLVGEEERKML 536

Query: 358 DAIEKL-----------------IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
             I K                    +K++ L  D+ ++     +    Q + A+ N    
Sbjct: 537 KEIVKTAKTPVKARILPQDVILKFREKIENLEKDIYAVLCLEREEREMQQSEAQINKAKK 596

Query: 401 QKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
           Q  TG  +   + S ++S    +E  K  KL + +QE D   L  RG 
Sbjct: 597 QLETG-KKEAGSESLERSWFQTREERKKEKLAKALQEFD---LALRGK 640


>gi|34763211|ref|ZP_00144175.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|256846171|ref|ZP_05551629.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_36A2]
 gi|27887121|gb|EAA24228.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|256719730|gb|EEU33285.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_36A2]
          Length = 528

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 138/372 (37%), Positives = 216/372 (58%), Gaps = 16/372 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F +LGLS KV+  +   GY  PTPIQ  TIP +L+   D+ G AQTGTGKTA+F LP++
Sbjct: 9   EFRELGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E     +   + ++L PTRELA QVA+       +  + V  + GG   + Q K ++
Sbjct: 69  ENFE----NLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR++D   R  L +N+++  ++DEAD ML+MGF+  I+ I +     ++ 
Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
           L FSATM DE+ KV++N ++  + + V +   T +  E  +  V    ++   C ++   
Sbjct: 185 LFFSATMPDEIMKVAKNHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRII--- 241

Query: 239 LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               D  K   GIIFC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I
Sbjct: 242 ----DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKI 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T +  ++ + 
Sbjct: 298 NILVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRR 357

Query: 357 IDAIEKLIEKKV 368
           +  I+K ++K++
Sbjct: 358 LLQIQKAVKKEI 369


>gi|281349896|gb|EFB25480.1| hypothetical protein PANDA_006406 [Ailuropoda melanoleuca]
          Length = 383

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 139/361 (38%), Positives = 216/361 (59%), Gaps = 12/361 (3%)

Query: 12  VVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV 70
           V+C   D  G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L  L +   R+
Sbjct: 5   VLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRL 64

Query: 71  RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130
                L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +   ++I TP
Sbjct: 65  F---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATP 121

Query: 131 GRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           GR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T LFSATMT 
Sbjct: 122 GRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTK 181

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQLLQSQDTMKN 247
           ++QK+    L+NP +  V++   T E ++  + F+ +  + +    +L +L  +     +
Sbjct: 182 KVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN-----S 236

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++A+D+A+R
Sbjct: 237 FMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASR 296

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           GLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    IE LI KK
Sbjct: 297 GLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK 356

Query: 368 V 368
           +
Sbjct: 357 L 357


>gi|281355042|ref|ZP_06241536.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281317922|gb|EFB01942.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 627

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 133/362 (36%), Positives = 215/362 (59%), Gaps = 7/362 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
           +F  LG+S +V+ A+   G+  P+PIQ  TIP +L+   D+ G AQTGTGKTA+F +P++
Sbjct: 6   NFRKLGVSEEVLEALRAKGFEAPSPIQALTIPKLLEGAVDLIGQAQTGTGKTAAFGIPVI 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + E G  +   P+ LIL PTREL+ Q+A+          L +A   GG   E Q ++L 
Sbjct: 66  ELCEGGGKK---PQALILSPTRELSIQIAEELNSLKGKRKLRIAPFYGGQMIEIQLQRLR 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV+I TPGRI+D   RGKL  + ++  V+DEAD MLDMGF+  I+ I       ++ 
Sbjct: 123 DGIDVVIGTPGRIMDLMERGKLDFSELKFAVLDEADEMLDMGFVEDIEKILGATNSDKRM 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSATM  E+ K++E F+++ + +   +     E  E  +     +   K   L +++ 
Sbjct: 183 LMFSATMPPEILKIAERFMRSYETVRAESAQLNTELTEQIYFEV--RREDKFEALSRIID 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  +   ++FC  + +V  L   L+ +G  V A+HG+I Q  R ++++ FK+   ++++
Sbjct: 241 VEQDL-YALVFCRTRNDVDELVEKLKLRGHRVEALHGDIAQMQRTRVINQFKDKKFKILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV N+ +P   E Y+HRIGRTGRAG++G A T V   + + +  I
Sbjct: 300 ATDVAARGIDVNDLTHVINYSMPQGTETYVHRIGRTGRAGKNGTAITFVTPAEYRKLTMI 359

Query: 361 EK 362
           ++
Sbjct: 360 QR 361


>gi|237742838|ref|ZP_04573319.1| ATP-dependent RNA helicase [Fusobacterium sp. 4_1_13]
 gi|229430486|gb|EEO40698.1| ATP-dependent RNA helicase [Fusobacterium sp. 4_1_13]
          Length = 528

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 138/372 (37%), Positives = 216/372 (58%), Gaps = 16/372 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F +LGLS KV+  +   GY  PTPIQ  TIP +L+   D+ G AQTGTGKTA+F LP++
Sbjct: 9   EFRELGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E     +   + ++L PTRELA QVA+       +  + V  + GG   + Q K ++
Sbjct: 69  ENFE----NLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR++D   R  L +N+++  ++DEAD ML+MGF+  I+ I +     ++ 
Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
           L FSATM DE+ KV++N ++  + + V +   T +  E  +  V    ++   C ++   
Sbjct: 185 LFFSATMPDEIMKVAKNHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRII--- 241

Query: 239 LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               D  K   GIIFC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I
Sbjct: 242 ----DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKI 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T +  ++ + 
Sbjct: 298 NILVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRR 357

Query: 357 IDAIEKLIEKKV 368
           +  I+K ++K++
Sbjct: 358 LLQIQKAVKKEI 369


>gi|332253514|ref|XP_003275885.1| PREDICTED: probable ATP-dependent RNA helicase DDX49 [Nomascus
           leucogenys]
          Length = 483

 Score =  256 bits (653), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 157/416 (37%), Positives = 233/416 (56%), Gaps = 17/416 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178
             V+I TPGR+ DH        +  I  LV+DEADR+L+ G   F   ++ I + VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+TD L+++       P   E   P ST E ++  ++    +   K A L  L
Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKV--KDAYLVHL 238

Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q  QD  ++   IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK   
Sbjct: 239 IQCFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSI 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI 
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            + AIE+ I+KK++  + + + +   L ++++      R+   I  ++  FD +K+
Sbjct: 359 LVHAIEEQIKKKLEEFSVEEAKVLQILTQVNV-----VRRECEIKLEAAHFDEKKE 409


>gi|31542656|ref|NP_061943.2| probable ATP-dependent RNA helicase DDX49 [Homo sapiens]
 gi|114676212|ref|XP_512518.2| PREDICTED: probable ATP-dependent RNA helicase DDX49 [Pan
           troglodytes]
 gi|74753527|sp|Q9Y6V7|DDX49_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX49; AltName:
           Full=DEAD box protein 49
 gi|2443870|gb|AAB81544.1| R27090_2 [Homo sapiens]
 gi|12803677|gb|AAH02674.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Homo sapiens]
 gi|119605165|gb|EAW84759.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49, isoform CRA_b [Homo
           sapiens]
 gi|312152524|gb|ADQ32774.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [synthetic construct]
          Length = 483

 Score =  256 bits (653), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 157/416 (37%), Positives = 233/416 (56%), Gaps = 17/416 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178
             V+I TPGR+ DH        +  I  LV+DEADR+L+ G   F   ++ I + VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+TD L+++       P   E   P ST E ++  ++    +   K A L  L
Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKV--KDAYLVHL 238

Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q  QD  ++   IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK   
Sbjct: 239 IQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSI 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI 
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            + AIE+ I+KK++  + + + +   L ++++      R+   I  ++  FD +K+
Sbjct: 359 LVHAIEEQIKKKLEEFSVEEAEVLQILTQVNV-----VRRECEIKLEAAHFDEKKE 409


>gi|299117107|emb|CBN73878.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 467

 Score =  256 bits (653), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 138/361 (38%), Positives = 209/361 (57%), Gaps = 11/361 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  +   V+  VL  G+ KPTPIQ +  P+ L   D+ GI+ TG+GKT +F+LP +
Sbjct: 61  MTFEEASMPEYVLREVLKQGFPKPTPIQSQGWPMALLGRDMVGISATGSGKTLAFLLPAM 120

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L++ PTRELA Q+ +  +K+G + ++    + GG+P  +
Sbjct: 121 IHINAQPYLEQGDG----PIVLVVAPTRELAVQIKEECDKFGGSSDIKNTCVYGGVPKRS 176

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L RG +++I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I++I S +
Sbjct: 177 QVYDLSRGVEIVIATPGRLIDLLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRSIVSQI 236

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTL++SAT   E++ ++ +FL+N  ++ V +   +A       V     +  K  +
Sbjct: 237 RPDRQTLMWSATWPKEVEGLARDFLRNYYQVTVGSLELSANKDIQQVVEIVEDFG-KYRV 295

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L + LQ  +     +IF   KK    L  SL  +G+   AIHG+ +Q  R ++L +FKEG
Sbjct: 296 LAKHLQEHNNAGRVLIFVETKKGCDALTRSLRHEGWPALAIHGDKNQSERDRVLHDFKEG 355

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARGLD+ D+  V NFD P   E+Y+HRIGR GRAG  G A +  A ++ 
Sbjct: 356 RSLILVATDVAARGLDVKDIRMVINFDFPKEMESYVHRIGRCGRAGHKGTAISFFAGKNS 415

Query: 355 K 355
           K
Sbjct: 416 K 416


>gi|152969927|ref|YP_001335036.1| ATP-dependent RNA helicase DbpA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954776|gb|ABR76806.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 457

 Score =  256 bits (653), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 219/382 (57%), Gaps = 9/382 (2%)

Query: 3   FADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L + P    A L + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLTVLPAAQLANLNELGYLSMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++  R   +   +L+L PTRELA QVA    +  +   N+ + +L GG PF AQ   L+
Sbjct: 64  HIDPARFETQ---SLVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ ++ LV+DEADRMLDMGF   I  +    P  RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +  +S    +NP+ IE+NT  +    IE  F         K ALLQ+LL 
Sbjct: 181 LLFSATWPAAIAAISGRVQRNPQTIEINTVDAL-PAIEQQFFEV--SRHGKIALLQRLL- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN K++   +C +L   G S  ++HG+++QR R + L  F  G+++++V
Sbjct: 237 SQHQPASCVVFCNTKRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +    +
Sbjct: 297 ATDVAARGLDIKSLALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQRATIL 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPL 382
             +++  ++WL     +   PL
Sbjct: 357 ADMLQLSLNWLPAPTGNTIAPL 378


>gi|260495553|ref|ZP_05815678.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_33]
 gi|260196895|gb|EEW94417.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_33]
          Length = 528

 Score =  256 bits (653), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 138/372 (37%), Positives = 216/372 (58%), Gaps = 16/372 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F DLGLS KV+  +   GY  PTPIQ  TIP +L+   D+ G AQTGTGKTA+F LP++
Sbjct: 9   EFRDLGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E     +   + ++L PTRELA QVA+       +  + V  + GG   + Q K ++
Sbjct: 69  ENFE----NLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR++D   R  L +N+++  ++DEAD ML+MGF+  I+ I +     ++ 
Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
           L FSATM +E+ KV++N ++  + + V +   T +  E  +  V    ++   C ++   
Sbjct: 185 LFFSATMPEEIMKVAKNHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRII--- 241

Query: 239 LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               D  K   GIIFC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I
Sbjct: 242 ----DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKI 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T +  ++ + 
Sbjct: 298 NILVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRR 357

Query: 357 IDAIEKLIEKKV 368
           +  I+K ++K++
Sbjct: 358 LLQIQKAVKKEI 369


>gi|161613874|ref|YP_001587839.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168230079|ref|ZP_02655137.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194471340|ref|ZP_03077324.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|161363238|gb|ABX67006.1| hypothetical protein SPAB_01610 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194457704|gb|EDX46543.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205335550|gb|EDZ22314.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 457

 Score =  256 bits (653), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 140/355 (39%), Positives = 213/355 (60%), Gaps = 8/355 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L  ++     +   + L+L 
Sbjct: 22  GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF AQ   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQTLLFSAT  + +  +S   
Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPETRQTLLFSATWPEAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            Q P RIE++T  +    IE  F  T A   +K +LLQ LL SQ    + ++FCN KK+ 
Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L   G S  A+HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
           N+++    E ++HRIGRT RAG  G A +  A E+ +  + + ++++ K++WLN 
Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369


>gi|281343550|gb|EFB19134.1| hypothetical protein PANDA_000569 [Ailuropoda melanoleuca]
          Length = 457

 Score =  256 bits (653), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 157/416 (37%), Positives = 234/416 (56%), Gaps = 17/416 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178
             V+I TPGR+ DH        +  I  LV+DEADR+L+ G   F   ++ I + VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+TD L+++       P   E   P  T E ++  ++    +   K A L  L
Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKV--KDAYLVHL 238

Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q+ QD  ++   IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK   
Sbjct: 239 IQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSI 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI 
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            + AIE+ I+KK++ L+ + + +   L ++++      R+   I  ++  FD +K+
Sbjct: 359 LVHAIEEQIKKKLEELSVEEAKVLQILTQVNV-----VRRECEIKLEAANFDEKKE 409


>gi|326774180|ref|ZP_08233462.1| ATP-dependent RNA helicase DeaD [Actinomyces viscosus C505]
 gi|326636319|gb|EGE37223.1| ATP-dependent RNA helicase DeaD [Actinomyces viscosus C505]
          Length = 558

 Score =  256 bits (653), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 143/412 (34%), Positives = 225/412 (54%), Gaps = 23/412 (5%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FAD G+ P++ C  LDA G   P PIQ  T+P+ L+  D+ G A+TGTGKT  F +P+L 
Sbjct: 72  FADFGVEPEI-CEALDAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLM 130

Query: 62  IL----EKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                 E+G         P+ L++ PTRELA QVA+          + +  + GG  +E 
Sbjct: 131 DTLGPGEEGWDEDPASGSPQALVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEP 190

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERGA+V++ TPGR++D   RG L + ++  +V+DEAD MLD+GF+P ++ I +  
Sbjct: 191 QIEDLERGAEVVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILART 250

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCA 233
              R T+LFSATM   +  ++  ++  P  I    P     T++      Y  +S  K  
Sbjct: 251 RADRHTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQTVQQVVYRTHSMNKVE 310

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           ++ ++LQ++   +  IIF   K+    +   L  +GF+  A+HG++ Q +R + L  F+ 
Sbjct: 311 VVSRILQAEGRGRT-IIFARTKRTAARVADDLRARGFATGALHGDLGQGAREQALRAFRN 369

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             + ++VA+D+AARG+D+ DV HV N+  P   + Y+HRIGRTGRAG  G A T V  +D
Sbjct: 370 NKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFVDWDD 429

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           +     I K +   ++           P+E    ++H  +  +  IP+K TG
Sbjct: 430 VPRWRIIAKALGLPIE----------EPVETYHTSEHLFS--DLSIPEKVTG 469


>gi|198463474|ref|XP_002135506.1| GA28589 [Drosophila pseudoobscura pseudoobscura]
 gi|198151271|gb|EDY74133.1| GA28589 [Drosophila pseudoobscura pseudoobscura]
          Length = 799

 Score =  256 bits (653), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 144/388 (37%), Positives = 220/388 (56%), Gaps = 15/388 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF + G    V+  +   G+ KPT IQ +  P+ L   D+ G+AQTG+GKT ++VLP +
Sbjct: 142 IDFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIALSGRDLVGVAQTGSGKTLAYVLPAV 201

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA Q+     ++G N ++    + GG P   
Sbjct: 202 VHINNQPRLERGDG----PIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQ 257

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 258 QARDLERGVEIVIATPGRLIDFLERGTTTLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 317

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCA 233
              RQ L++SAT   E+++++E FL N   I+VN  S T     +   +      S+K  
Sbjct: 318 RPDRQVLMWSATWPKEVRQLAEEFLTN--YIQVNIGSLTLSANHNILQIVDVCDESEKLG 375

Query: 234 LLQQLLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
            L +LL   S +     IIF   KK V  +  ++ +QG+  CAIHG+  Q+ R  +LS+F
Sbjct: 376 KLIKLLSDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSF 435

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G   ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL   
Sbjct: 436 RNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTH 495

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
            +    + + +++ +    +N  L S++
Sbjct: 496 SNANKANDLIQVLREANQEINPKLLSMS 523


>gi|163803186|ref|ZP_02197068.1| ATP-dependent RNA helicase [Vibrio sp. AND4]
 gi|159173007|gb|EDP57841.1| ATP-dependent RNA helicase [Vibrio sp. AND4]
          Length = 437

 Score =  255 bits (652), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 146/382 (38%), Positives = 218/382 (57%), Gaps = 9/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FADL L P+V+  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADLDLKPQVIEGLDKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT  E    +   PR +I+ PTRELA Q+ ++ E    +  L  AL  GG  ++ Q  K
Sbjct: 71  LLTTPEHEGRKPTQPRAIIMAPTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLAK 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+LI T GRI+D + +    +NNI+ +V+DEADRM D+GFI  I+ +   +P  +
Sbjct: 131 LQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + L  LFSAT++  +Q+++   + NP+ + V     T   I+      Y     K  LLQ
Sbjct: 191 ERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELF--YPSNKDKMTLLQ 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ +D     IIF N K    ++   L   G  V  + G++ Q+ R KIL  F  G +
Sbjct: 249 TLIE-EDWPDRAIIFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGDV 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   ++   +
Sbjct: 308 DLLVATDVAARGLHIPLVTHVFNFDLPDDCEDYVHRIGRTGRAGESGHSISFACEDYAVN 367

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
           +  IE+ IE  +   + D S+L
Sbjct: 368 LPPIEEYIEHSIPVSDYDASAL 389


>gi|306835508|ref|ZP_07468523.1| ATP-dependent RNA helicase DeaD [Corynebacterium accolens ATCC
           49726]
 gi|304568617|gb|EFM44167.1| ATP-dependent RNA helicase DeaD [Corynebacterium accolens ATCC
           49726]
          Length = 446

 Score =  255 bits (652), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 142/359 (39%), Positives = 212/359 (59%), Gaps = 11/359 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG++ ++   + D G  +   IQ  T+P+ L   D+ G A+TG GKT  F +P+L  
Sbjct: 11  FAELGVAAEICDGLADRGIARTFAIQELTLPIALNGQDLIGQARTGMGKTFGFGVPLLDR 70

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +        +   PR LI+ PTRELA QV  + +    +  + +A + GG P+E Q K L
Sbjct: 71  VFDDADIAPLDGTPRALIVVPTRELAQQVTADLQDAAAHLPVRLASIYGGRPYEEQIKLL 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPFTR 178
           +RG DV+I TPGR+LD   RG L++ ++ I+V+DEAD MLD+GF+P I+ I  +L     
Sbjct: 131 QRGVDVVIGTPGRLLDLHERGDLVLRHVAIVVLDEADEMLDLGFLPSIEAILEALDGNAH 190

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF---VATYAQYSKKCALL 235
           QT+LFSATM   +  +S  F+  P  I      S A+ + H     V   A    K  ++
Sbjct: 191 QTMLFSATMPGAILNLSRQFMNKPVHIRAE---SEADEVTHETTRKVTFQAHRMDKVPVI 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +LQ+Q   ++ IIF   K++   L   L ++GF V A+HG++ Q+SR K L  F+ G 
Sbjct: 248 AHILQAQGRGRS-IIFTRTKRSAAQLADDLAERGFHVGAVHGDLGQKSREKSLQAFRSGE 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           + ++VA+D+AARG+D+ DV HV N+ VP+    +IHRIGRTGRAG  G A TLV  +++
Sbjct: 307 VDILVATDIAARGIDVDDVTHVINYQVPDDPMTFIHRIGRTGRAGHTGTAVTLVGYDEL 365


>gi|158514834|sp|A3LS22|RRP3_PICST RecName: Full=ATP-dependent rRNA helicase RRP3
          Length = 484

 Score =  255 bits (652), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 140/370 (37%), Positives = 217/370 (58%), Gaps = 13/370 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L P+++ A+    + KPTPIQ + IP  L+  D+ G+AQTG+GKTA+F +P+L  
Sbjct: 73  FSELKLVPELLEAIQQMKFSKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQS 132

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L + +        L+L P RELA Q+ + F+  G    +    L+GG+    Q + L R 
Sbjct: 133 LWEAQTPYF---GLVLAPARELAYQIKETFDALGSTMGVRTVCLVGGMDMMDQARDLMRK 189

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             ++I TPGRI+DH    K   +  ++  V+DEAD++LD+ F P +  I   +P  R T 
Sbjct: 190 PHIIIATPGRIMDHLEHTKGFSLKMLKYFVMDEADKLLDLEFGPVLDKILKQIPSKRTTY 249

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT++++K+    L NP R+ V++   TA+ +    +     Y  K   L  LL +
Sbjct: 250 LFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLIQSMMLVSDGY--KNTYLIHLL-N 306

Query: 242 QDTMKNGIIFCNQKKNVVN---LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   K+ IIF   + +      LC  L   GFS   +HG++ Q  R+  L+ FK GT  +
Sbjct: 307 EFVGKSIIIFARTRAHTQRTSILCRIL---GFSAVPLHGDLTQAQRLGSLNKFKSGTANI 363

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLDIP V  V N+D+P  ++ Y+HR+GRT RAGR GK+ +LV + D++   
Sbjct: 364 LIATDVAARGLDIPSVDVVINYDIPTDSKAYVHRVGRTARAGRSGKSISLVTQYDLEMYL 423

Query: 359 AIEKLIEKKV 368
            IE+ I+KK+
Sbjct: 424 RIEQSIQKKL 433


>gi|268592936|ref|ZP_06127157.1| ATP-dependent RNA helicase RhlB [Providencia rettgeri DSM 1131]
 gi|291311728|gb|EFE52181.1| ATP-dependent RNA helicase RhlB [Providencia rettgeri DSM 1131]
          Length = 428

 Score =  255 bits (652), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 159/428 (37%), Positives = 239/428 (55%), Gaps = 32/428 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKV+ A+   G+   TPIQ  T+P  ++  DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVIEALNKKGFNFCTPIQASTLPFTVEGKDVAGQAQTGTGKTLAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +   PR LI+ PTRELA Q+  + ++  +   L + L  GG  ++ Q K 
Sbjct: 71  LLTHPAIEGKKANQPRALIMAPTRELAVQIYSDAKELAEYTGLKMGLAYGGDGYDEQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
           L+ G D+LI T GR++D+  +G + ++ ++++V+DEADRM D+GFI  I+ I   +P   
Sbjct: 131 LQNGVDILIGTTGRLIDYAKQGHVDLSAVQVVVLDEADRMYDLGFIKDIRWIFRRMPGAA 190

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
            R  LLFSAT++  +++++   + NP+ +EV     T   I E  F   Y    +K  LL
Sbjct: 191 ERLNLLFSATLSYRVRELAFEQMNNPEYVEVEPLQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q LL+ ++  +  IIF N K    ++   L   G  V  + G++ Q+ R++IL  F +G 
Sbjct: 248 QTLLE-EEWPERCIIFANTKHRCDDIWAHLAADGHRVGLLTGDVAQKKRLRILEQFTQGH 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGNSISLACEEYSL 366

Query: 356 HIDAIEKLIEKK--VDWLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           ++ AIE+ I+    V   N D  LS L  P            R++ P P    G  RR  
Sbjct: 367 NLPAIEEYIQHSIPVSKYNSDALLSDLPAP-----------KRRHRPRP----GGQRRNS 411

Query: 412 NYSSQKSH 419
           N  SQ+ H
Sbjct: 412 N--SQRRH 417


>gi|223944961|gb|ACN26564.1| unknown [Zea mays]
          Length = 734

 Score =  255 bits (652), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 208/373 (55%), Gaps = 25/373 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +++  L  +++ A+  AGY KP+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPML+ 
Sbjct: 315 WSESKLGTELLRAIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSY 374

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + +            P  +++ PTRELA Q+ +   K+     L V  ++GG   E Q  
Sbjct: 375 ITRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGLKVVSIVGGQSIEEQGF 434

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           K+ +G +++I TPGR+LD   R   ++N    +V+DEADRM+DMGF P +  +   +P +
Sbjct: 435 KIRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 494

Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
                            R T +FSATM   +++++  +L+NP  + + T     + I   
Sbjct: 495 NLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQN 554

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
            +    + S+K   LQ++L      K  I+FCN KK        L+K GF V  +HG   
Sbjct: 555 VI--MVKESEKMPRLQKILTDLGD-KTAIVFCNTKKTADMRAKDLDKAGFRVTTLHGGKS 611

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q  R   L  F+     ++VA+D+A RG+DIPDV HV N+++P+  + Y HRIGRTGRAG
Sbjct: 612 QDQREISLDGFRNRRFNVLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGRAG 671

Query: 341 RHGKAFTLVAKED 353
           + G A + +  E+
Sbjct: 672 KKGVASSFLTYEN 684


>gi|156972680|ref|YP_001443587.1| ATP-dependent RNA helicase RhlB [Vibrio harveyi ATCC BAA-1116]
 gi|189040086|sp|A7MXT4|RHLB_VIBHB RecName: Full=ATP-dependent RNA helicase rhlB
 gi|156524274|gb|ABU69360.1| hypothetical protein VIBHAR_00338 [Vibrio harveyi ATCC BAA-1116]
          Length = 437

 Score =  255 bits (652), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 145/382 (37%), Positives = 218/382 (57%), Gaps = 9/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FADLGL P+V   +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADLGLKPQVTEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT  E    +   PR +I+ PTRELA Q+ ++      +  L  AL  GG  ++ Q  K
Sbjct: 71  LLTTPEHEGRKPTQPRAIIMAPTRELAIQIFNDAAPLIASTGLKAALAYGGESYDKQLAK 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+LI T GRI+D + +    +NNI+ +V+DEADRM D+GFI  I+ +   +P  +
Sbjct: 131 LQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + L  LFSAT++  +Q+++   + NP+ + V     T   I+      Y     K ALLQ
Sbjct: 191 ERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELF--YPSNEDKMALLQ 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ ++     I+F N K    ++   L   G  V  + G++ Q+ R KIL  F  G +
Sbjct: 249 TLIE-EEWPDRAIVFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGEV 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   ++   +
Sbjct: 308 DLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAIN 367

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
           +  IE+ IE  +   + D S+L
Sbjct: 368 LPPIEEYIEHAIPVSDYDASAL 389


>gi|330447222|ref|ZP_08310872.1| ATP-dependent RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491413|dbj|GAA05369.1| ATP-dependent RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 436

 Score =  255 bits (652), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 140/372 (37%), Positives = 218/372 (58%), Gaps = 9/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FA+LGL+P V+  + D G+   TPIQ   +P++L  HD+ G AQTGTGKT +F+      
Sbjct: 11  FAELGLNPLVLKGLEDKGFHNCTPIQALALPVMLSGHDIAGQAQTGTGKTIAFLTATFNH 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L        +   PR +I+ PTRELA Q+ ++      +  L   L  GG P+E Q   
Sbjct: 71  LLETAAPAHRKTNQPRAIIMAPTRELAIQIYNDASSLIASTGLKAGLAYGGEPYEKQKAI 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-- 176
           L+ G D+LI T GRI+D + +  + +N+I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LDEGVDILIGTCGRIIDFYKQRVIELNSIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPT 190

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R +LLFSAT++  +++++   + +P+ + V     T   I+      Y    +K  LLQ
Sbjct: 191 ERLSLLFSATLSYRVKELAFEHMNSPESVIVEPEQKTGHRIQEELF--YPSNQEKMRLLQ 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ ++  +  IIF N K    ++   L   G  V  + G++ Q+ R +IL  F +G I
Sbjct: 249 TLIE-EEWPERAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVPQKKRERILDQFTKGDI 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL IP V HVFN+D+P+ AE+Y+HRIGRTGRAG  G + +   +E   +
Sbjct: 308 DILVATDVAARGLHIPAVTHVFNYDLPDDAEDYVHRIGRTGRAGASGHSISFACEEYAIN 367

Query: 357 IDAIEKLIEKKV 368
           + AIE  IE  +
Sbjct: 368 LPAIETYIEHGI 379


>gi|325068259|ref|ZP_08126932.1| DEAD/DEAH box helicase domain protein [Actinomyces oris K20]
          Length = 507

 Score =  255 bits (652), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 143/412 (34%), Positives = 225/412 (54%), Gaps = 23/412 (5%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FAD G+ P++ C  LDA G   P PIQ  T+P+ L+  D+ G A+TGTGKT  F +P+L 
Sbjct: 72  FADFGVEPEI-CEALDAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLM 130

Query: 62  IL----EKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                 E+G         P+ L++ PTRELA QVA+          + +  + GG  +E 
Sbjct: 131 DTLGPGEEGWDEDPASGSPQALVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEP 190

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERGA+V++ TPGR++D   RG L + ++  +V+DEAD MLD+GF+P ++ I +  
Sbjct: 191 QIEDLERGAEVVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILART 250

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCA 233
              R T+LFSATM   +  ++  ++  P  I    P     T++      Y  +S  K  
Sbjct: 251 RADRHTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQTVQQVVYRTHSMNKVE 310

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           ++ ++LQ++   +  IIF   K+    +   L  +GF+  A+HG++ Q +R + L  F+ 
Sbjct: 311 VVSRILQAEGRGRT-IIFARTKRTAARVADDLRARGFATGALHGDLGQGAREQALRAFRN 369

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             + ++VA+D+AARG+D+ DV HV N+  P   + Y+HRIGRTGRAG  G A T V  +D
Sbjct: 370 NKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFVDWDD 429

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           +     I K +   ++           P+E    ++H  +  +  IP+K TG
Sbjct: 430 VPRWRIIAKALGLPIE----------EPVETYHTSEHLFS--DLSIPEKVTG 469


>gi|332305039|ref|YP_004432890.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172368|gb|AEE21622.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 459

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 214/370 (57%), Gaps = 8/370 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ LGL P ++  +   G+ + T IQ  T+P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   EFSSLGLEPALLDNLQSMGFSQMTDIQADTLPAILSGRDVVAKAKTGSGKTAAFGLALLH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            L+  R RV+    L++ PTRELA QVA    + G+  +N+ V  L GG P   Q   LE
Sbjct: 64  NLDVKRFRVQ---ALVMCPTRELAEQVALEIRRLGRAIHNIKVLTLCGGTPMGPQIGSLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRI+DH  + +L ++ +  LV+DEADRMLDMGF   +  +   VP  RQT
Sbjct: 121 HGAHIIVGTPGRIMDHLYKRRLDLSEVNTLVLDEADRMLDMGFEDEMDAVIKSVPAQRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  +S    ++P  + V +   T    +  F    A  +K  A L    Q
Sbjct: 181 LLFSATYPESIAAISGQVQKDPLEVTVESTHDTDSIQQVFFEVDDAHRTKATAALLSHYQ 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + I+FCN K     +  SL+  G SV A+HG+++QR R ++L  F   ++ ++V
Sbjct: 241 PE----SAIVFCNTKIACQEVADSLQSLGVSVLALHGDLEQRERNQVLVRFANKSVSVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI +V  V ++ +    E +IHRIGRTGRA   G A TLVA +++   +AI
Sbjct: 297 ATDVASRGLDIKEVNAVISYHITPDPEVHIHRIGRTGRAESKGVALTLVAPDEVARANAI 356

Query: 361 EKLIEKKVDW 370
           E   + K+ W
Sbjct: 357 EDYQKAKLKW 366


>gi|303251782|ref|ZP_07337953.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307249083|ref|ZP_07531090.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302649212|gb|EFL79397.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306854371|gb|EFM86567.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 445

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 134/368 (36%), Positives = 214/368 (58%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P+++ A+   GY +PT +Q +TIP  L   D+ G A TGTGKTA+F+LP +
Sbjct: 8   MTFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAI 67

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QVA+  + + +   L++A + GGI ++   +  
Sbjct: 68  QHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGIAYQNHGEVF 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR++ +          +EIL+ DEADRML MGF    + I +   + + 
Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187

Query: 180 TLLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           T LFSAT+  EL    ++  L NP +I+        + I+  +         K  LL +L
Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHA-DNVEHKTKLLARL 246

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + + + M+  I+F  ++++V  L  +L K+G     + G++ Q  R + ++  KEG + +
Sbjct: 247 ISTME-MEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAITRLKEGVVNV 305

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI DV +V NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D K + 
Sbjct: 306 LVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLG 365

Query: 359 AIEKLIEK 366
            I++  E+
Sbjct: 366 KIKRYTEE 373


>gi|288803318|ref|ZP_06408751.1| ATP-dependent RNA helicase DeaD [Prevotella melaninogenica D18]
 gi|288334138|gb|EFC72580.1| ATP-dependent RNA helicase DeaD [Prevotella melaninogenica D18]
          Length = 553

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 212/349 (60%), Gaps = 8/349 (2%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84
           TP+Q K IP +L+ HDV G+AQTGTGKTA+++LP+L+ L  G         +I+ PTREL
Sbjct: 7   TPVQEKCIPEILKGHDVLGVAQTGTGKTAAYLLPVLSKLADGGYPESAINCVIMSPTREL 66

Query: 85  AAQVADNFEKYGKNYN--LTVALLIG--GIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           A Q+    + +    N    VA+  G  G  ++ + K L  GADV+I TPGR + H + G
Sbjct: 67  AQQIDQGMQGFAYYLNGVSCVAVYGGNDGNRYDQELKSLALGADVVIATPGRFISHISLG 126

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200
            + ++ +   ++DEADRMLDMGF   I  I   +P T QT++FSATM  +++++++  L+
Sbjct: 127 NVDLSKVSFFILDEADRMLDMGFSDDIMTIAKKLPATCQTIMFSATMPAKIEELAKTLLK 186

Query: 201 NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVN 260
           NP  I++   S  AE I+      Y   ++K  +++ + ++ D +K  IIF   K+ V  
Sbjct: 187 NPVEIKLAV-SKPAEKIQQTAYVCYE--TQKMGIIKDIFKAGD-LKRVIIFSGSKQKVKQ 242

Query: 261 LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNF 320
           +  SL +   +   +H ++DQ  R  ++  FK G I ++VA+D+ +RG+DI D+  V N+
Sbjct: 243 IAGSLNRMHINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDIVSRGIDIDDIAMVINY 302

Query: 321 DVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           DVP+ AE+Y+HRIGRT RA R GKA T V ++DI     IE  +EK+V+
Sbjct: 303 DVPHDAEDYVHRIGRTARADRDGKAITFVNEDDIYFFQQIESFLEKEVE 351


>gi|254787436|ref|YP_003074865.1| ATP-independent RNA helicase DbpA [Teredinibacter turnerae T7901]
 gi|237683460|gb|ACR10724.1| ATP-independent RNA helicase DbpA [Teredinibacter turnerae T7901]
          Length = 461

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 140/348 (40%), Positives = 206/348 (59%), Gaps = 8/348 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P ++  + D GY   TPIQ   +P +LQ  DV G A+TG+GKTA+F L +L  
Sbjct: 7   FSSLNLKPALLSNLSDLGYNTMTPIQAAALPAILQGSDVLGKAKTGSGKTATFGLGLLQR 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           LE  R RV+    L+L PTRELA QVA    K  ++ +N+ +  L GG  F  Q   LE 
Sbjct: 67  LEVERFRVQ---ALVLCPTRELADQVAAELRKLARSIHNIKILTLCGGAAFGPQVGSLEH 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  +G L + +++ LV+DEADRMLDMGF   +  I  L P  RQTL
Sbjct: 124 GAHIIVGTPGRVHDHLRKGNLQLGDLQTLVLDEADRMLDMGFAETLDAILDLAPKQRQTL 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + ++ +++    NP+ IEV    S  +  +  +       ++   LL Q    
Sbjct: 184 LFSATYPEAIESMAKRVQHNPQVIEVEAVHSDHDIEQMFYKVPLENRTQVLGLLLQKYLP 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  M    +FCN K+   ++  +L +QGFS  A+HG++ Q+ R + L  F   +  +MVA
Sbjct: 244 ESCM----VFCNTKRETQDVADALLQQGFSAVALHGDMIQKDRDRTLVLFANQSASVMVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +D+AARGLDI +V  V N+ +    E ++HRIGRTGRAG+ G+A +++
Sbjct: 300 TDVAARGLDIAEVDLVVNYQLSRDPEVHVHRIGRTGRAGKRGRAVSML 347


>gi|226510036|ref|NP_001147911.1| ATP-dependent RNA helicase DDX23 [Zea mays]
 gi|195614524|gb|ACG29092.1| ATP-dependent RNA helicase DDX23 [Zea mays]
          Length = 736

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 208/373 (55%), Gaps = 25/373 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +++  L  +++ A+  AGY KP+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPML+ 
Sbjct: 317 WSESKLGTELLRAIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSY 376

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + +            P  +++ PTRELA Q+ +   K+     L V  ++GG   E Q  
Sbjct: 377 ITRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGLKVVSIVGGQSIEEQGF 436

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           K+ +G +++I TPGR+LD   R   ++N    +V+DEADRM+DMGF P +  +   +P +
Sbjct: 437 KIRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 496

Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
                            R T +FSATM   +++++  +L+NP  + + T     + I   
Sbjct: 497 NLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQN 556

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
            +    + S+K   LQ++L      K  I+FCN KK        L+K GF V  +HG   
Sbjct: 557 VI--MVKESEKMPRLQKILTDLGD-KTAIVFCNTKKTADMRAKDLDKAGFRVTTLHGGKS 613

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q  R   L  F+     ++VA+D+A RG+DIPDV HV N+++P+  + Y HRIGRTGRAG
Sbjct: 614 QDQREISLDGFRNRRFNVLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGRAG 673

Query: 341 RHGKAFTLVAKED 353
           + G A + +  E+
Sbjct: 674 KKGVATSFLTYEN 686


>gi|170094690|ref|XP_001878566.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647020|gb|EDR11265.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 453

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 144/374 (38%), Positives = 215/374 (57%), Gaps = 16/374 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   ++ A+   GY  PT IQ++++P  L+  D+ G+A TG+GKTA+F LP+L  
Sbjct: 19  FKSLGLIDPLLEALEQVGYKTPTDIQVESLPHALEGRDIIGVASTGSGKTAAFALPILQK 78

Query: 63  LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L +       P+ L   +L PTRELA Q++  FE  G       A+++GG+   AQ   L
Sbjct: 79  LWED------PKGLFACVLAPTRELAYQISQQFESLGSAMGARCAVIVGGMDMPAQAIAL 132

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +++ TPGR++ H    K   + +I+ LV+DEADR+LD+ F   I  I  ++P  R
Sbjct: 133 AKRPHIVVATPGRLMQHLEETKGFSLRSIKFLVLDEADRLLDLDFGASIDKILKVIPKER 192

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            T LFSATMT ++ K+    L NP RIEV++   T  T+   ++        K A L  L
Sbjct: 193 TTYLFSATMTTKVAKLQRASLSNPVRIEVSSKYQTVSTLLQYYL--LMPLKDKDAYLIYL 250

Query: 239 LQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + S    +N II F     +   L   L   GF    +HG + Q  R+  L  FK G  +
Sbjct: 251 INS--LAQNSIIMFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSQRLGALGKFKSGGRR 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GK+ TLV + D++ +
Sbjct: 309 VLVATDVASRGLDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVTQYDVELV 368

Query: 358 DAIEKLIEKKVD-W 370
             IE+++ KK++ W
Sbjct: 369 QRIEQVVGKKMELW 382


>gi|301120023|ref|XP_002907739.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262106251|gb|EEY64303.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 639

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 141/361 (39%), Positives = 214/361 (59%), Gaps = 16/361 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA+  L P+V+  +    Y KPTP+Q  +IP+ L   D+   AQTG+GKT  F+ P L 
Sbjct: 165 EFAEEQLGPEVIRNLELCKYSKPTPVQKYSIPIGLAGRDMMACAQTGSGKTGGFLFPTLA 224

Query: 62  ILEK-----------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
            + +           GR+R   P  LIL PTRELA+Q+ D  +K+     +   ++ GG 
Sbjct: 225 AMLRVGGTPPPDVGHGRSRKIFPAGLILSPTRELASQIHDEAKKFCYCTGIAPVVIYGGA 284

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++LERG D+L+ TPGR++D   RG++ ++ I  L++DEADRMLDMGF P I+ I
Sbjct: 285 EVGRQLRELERGCDLLVATPGRLVDLMERGRISLSCIRFLILDEADRMLDMGFEPQIRRI 344

Query: 171 TSL--VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
                +P  RQT +FSAT   E+Q+++ +FL++   + V    S ++ ++   V    QY
Sbjct: 345 VEQEDMPRERQTFMFSATFPCEIQRLASDFLRDYIFLTVGRVGSASKDVKQT-VEYIEQY 403

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            K+  L++ L Q QD +   ++F   K+    L   L ++GF   +IHG+  QR R + L
Sbjct: 404 DKEDYLVRFLNQVQDGLI--LVFVETKRGADFLEDMLCREGFPATSIHGDRSQREREQAL 461

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           ++FK G   ++VA+D+AARGLDI  V  V NFD+PN  ++Y+HRIGRTGR G  G A ++
Sbjct: 462 ASFKSGRTPVLVATDVAARGLDIDGVTQVINFDLPNNIDDYVHRIGRTGRVGNVGYALSM 521

Query: 349 V 349
           +
Sbjct: 522 M 522


>gi|254508548|ref|ZP_05120665.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus 16]
 gi|219548490|gb|EED25498.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus 16]
          Length = 433

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 145/382 (37%), Positives = 221/382 (57%), Gaps = 9/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FADLGL P++   +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADLGLHPQITEGLEKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT  E    +   PR +I+ PTRELA Q+ ++ E    +  +  AL  GG  ++ Q  K
Sbjct: 71  LLTTSEHEGRKPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLAK 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G DVLI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  +
Sbjct: 131 LEDGVDVLIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + L  LFSAT++  +Q+++   + NP+ + V     T   I+      Y     K ALLQ
Sbjct: 191 ERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEVKTGHRIQEELF--YPSNEHKMALLQ 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ ++  +  IIF N K    ++   L   G  V  + G++ Q+ R +IL  F +G +
Sbjct: 249 TLIE-EEWPERAIIFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKRERILEQFTKGDV 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   ++   +
Sbjct: 308 DLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAIN 367

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
           +  IE+ IE  +   + D S+L
Sbjct: 368 LPPIEEYIEHTIPVSDYDPSAL 389


>gi|56119032|ref|NP_001007854.1| probable ATP-dependent RNA helicase DDX47 [Gallus gallus]
 gi|53130308|emb|CAG31483.1| hypothetical protein RCJMB04_6o10 [Gallus gallus]
          Length = 453

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 221/368 (60%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+  PT IQ++ IP+ LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 27  FKDLGVT-DVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 86  ALLDAPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAK 142

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 143 KPHIIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKT 202

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++  ++   +++  K + L  +L 
Sbjct: 203 FLFSATMTKQVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDSYLVYIL- 259

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 260 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILL 319

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GK+ T V + D++    I
Sbjct: 320 ATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 379

Query: 361 EKLIEKKV 368
           E LI KK+
Sbjct: 380 EHLIGKKL 387


>gi|322614908|gb|EFY11833.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619348|gb|EFY16228.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623160|gb|EFY20002.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628449|gb|EFY25237.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634857|gb|EFY31588.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638578|gb|EFY35273.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640887|gb|EFY37535.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645384|gb|EFY41912.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651731|gb|EFY48103.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654369|gb|EFY50691.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661210|gb|EFY57436.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662662|gb|EFY58869.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667727|gb|EFY63887.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671861|gb|EFY67982.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677094|gb|EFY73158.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680244|gb|EFY76283.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685327|gb|EFY81323.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194310|gb|EFZ79506.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199386|gb|EFZ84480.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323205860|gb|EFZ90823.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323217187|gb|EGA01908.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323227265|gb|EGA11435.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323232049|gb|EGA16156.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234576|gb|EGA18663.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238029|gb|EGA22088.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243370|gb|EGA27389.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246177|gb|EGA30162.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253678|gb|EGA37505.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259111|gb|EGA42757.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260421|gb|EGA44034.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266491|gb|EGA49978.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271215|gb|EGA54642.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 457

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 140/355 (39%), Positives = 212/355 (59%), Gaps = 8/355 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L  ++     +   + L+L 
Sbjct: 22  GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF AQ   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQTLLFSAT  D +  +S   
Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPETRQTLLFSATWPDAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            Q P RIE++T  +    IE  F  T     +K +LLQ LL SQ    + ++FCN KK+ 
Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSVH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L   G S  A+HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
           N+++    E ++HRIGRT RAG  G A +  A E+ +  + + ++++ K++WLN 
Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369


>gi|301753949|ref|XP_002912858.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like
           [Ailuropoda melanoleuca]
          Length = 477

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 157/416 (37%), Positives = 234/416 (56%), Gaps = 17/416 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178
             V+I TPGR+ DH        +  I  LV+DEADR+L+ G   F   ++ I + VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+TD L+++       P   E   P  T E ++  ++    +   K A L  L
Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKV--KDAYLVHL 238

Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q+ QD  ++   IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK   
Sbjct: 239 IQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSI 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI 
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            + AIE+ I+KK++ L+ + + +   L ++++      R+   I  ++  FD +K+
Sbjct: 359 LVHAIEEQIKKKLEELSVEEAKVLQILTQVNV-----VRRECEIKLEAANFDEKKE 409


>gi|238023679|ref|YP_002907911.1| ATP-dependent RNA helicase DbpA [Burkholderia glumae BGR1]
 gi|237878344|gb|ACR30676.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1]
          Length = 465

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 145/376 (38%), Positives = 207/376 (55%), Gaps = 16/376 (4%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY++ TPIQ  ++P+ L   D+   A+TG+GKTA+F L +L  L+  R  V+    +IL 
Sbjct: 27  GYLEMTPIQAASLPVALAGQDLIAQAKTGSGKTAAFSLALLARLDARRFEVQ---AMILC 83

Query: 80  PTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N+ V  L GG P   Q   LE GA +++ TPGRI+DH  
Sbjct: 84  PTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTASLEHGAHIVVGTPGRIMDHLE 143

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           RG L +  +  LV+DEADRMLDMGF   I  +    P  R T+LFSAT  + + K+S  F
Sbjct: 144 RGSLALGALNTLVLDEADRMLDMGFFDDIATVVRQCPTERLTMLFSATYPEGITKLSRQF 203

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           L+NPK I +       +  +  +  T  Q      LL    +   T    I FCN K+  
Sbjct: 204 LRNPKEIRLEETHDAGKIRQRFYEVTEDQRLHAVGLLLNHYRPAST----IAFCNTKQQC 259

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA+D+AARGLDI  +  V 
Sbjct: 260 RDLLDVLTAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVI 319

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL------- 371
           N DV    E ++HRIGRTGRA + G A +L +  ++  + AIE+   ++++W        
Sbjct: 320 NVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGAIEQAQGRELEWQPLAALVP 379

Query: 372 NGDLSSLNPPLEKIDI 387
            GD   L PP+E + I
Sbjct: 380 TGD-GPLLPPMETLQI 394


>gi|91793881|ref|YP_563532.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91715883|gb|ABE55809.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 426

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 142/365 (38%), Positives = 215/365 (58%), Gaps = 10/365 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA+ GL   ++  +++  Y  PTPIQ +TI  +L   D+   A TG+GKTA+F LP+L  
Sbjct: 9   FAEFGLHNALLSRLVELDYQVPTPIQAQTIGSILAGKDLLAGANTGSGKTAAFALPLLHA 68

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNK 117
           +L K    ++    R L+L PTRELA QVAD+F+ Y  + N  + V    GG+    Q  
Sbjct: 69  LLSKPLKPLKGNGVRALVLVPTRELAKQVADSFKSYAVHSNGAIKVVAAFGGVSVNTQML 128

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GAD+++ TPGR+LD  +   L + ++  LV+DEADRML +GF   I  I  L+P  
Sbjct: 129 ALRGGADIVVATPGRLLDLLSSNALKLADVSTLVLDEADRMLSLGFTDEIGQILGLLPKK 188

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTLLFSAT  +E++++++  L +P  I++  P S+   ++           KK ALL  
Sbjct: 189 KQTLLFSATFPEEVRQLTDALLNSPLEIQLQNPESST-LVQRVMTVNR---EKKTALLAH 244

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL ++   +  +IF   K +  +L   L K+G +    HG+  Q +R ++L  FK G IQ
Sbjct: 245 LL-NEHQWRQVLIFVGAKNSCNHLAQKLAKRGITAEVFHGDKAQGARSRVLEGFKAGDIQ 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G A +L++ ++  H 
Sbjct: 304 VLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLALSLLSHDEYHHF 363

Query: 358 DAIEK 362
             IEK
Sbjct: 364 TVIEK 368


>gi|311694990|gb|ADP97863.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15]
          Length = 427

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 145/395 (36%), Positives = 229/395 (57%), Gaps = 17/395 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L  +++ A+   G+   TPIQ +T+P  L   D+ G AQTGTGKTA+F++  +  
Sbjct: 13  FSDLNLDKRLLDAITAIGFEYCTPIQAETLPWTLACEDLIGQAQTGTGKTAAFLITAIQS 72

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           L      EK R     PR L L PTRELA Q+A + E+  ++    V  ++GG+ ++ Q 
Sbjct: 73  LLETPIPEKERF-ASEPRVLALAPTRELAMQIAKDAEQLCQHTGHNVVTVVGGMNYDKQR 131

Query: 117 KKLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT-SLV 174
            +L+    D+L+ TPGR++D      + ++ ++IL++DEADRMLDMGFIP ++ I     
Sbjct: 132 DQLQNEIVDILVATPGRLIDFLGSQDVFLDQLDILILDEADRMLDMGFIPDVKRIIRKCT 191

Query: 175 P-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           P   RQTLLFSAT   ++  ++  +  N + +E+     TAE +E           +K  
Sbjct: 192 PKEERQTLLFSATFNQDVLNLASMWTSNAEFVEIEPEQKTAERVEQTVY--LVGDDEKLP 249

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +L   L+  +  K  ++F N++    +L   L  QG  V  + G I Q  R+K L  FK+
Sbjct: 250 VLVNFLKRPEVEK-ALVFANRRDQCRDLEEDLRNQGVKVALMSGEIAQNKRLKTLDQFKK 308

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G+IQ++VA+D+A RG+ +  V HVFN+++P+ AE+Y+HRIGRTGRAG+HG + +   ++D
Sbjct: 309 GSIQVLVATDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGKHGVSISFAGEDD 368

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL----NPPLEK 384
              + AIE  I +K+     D + +    NPP+ +
Sbjct: 369 SFALPAIETYISQKLKTAVPDEALMAPMDNPPITR 403


>gi|329767883|ref|ZP_08259397.1| hypothetical protein HMPREF0428_01094 [Gemella haemolysans M341]
 gi|328838671|gb|EGF88270.1| hypothetical protein HMPREF0428_01094 [Gemella haemolysans M341]
          Length = 486

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 137/359 (38%), Positives = 217/359 (60%), Gaps = 7/359 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG+S + V ++ +  ++ PT IQ +TIP VL   D+   AQTG+GKT +F +P++  
Sbjct: 4   FEELGVSQETVQSLRNMNFISPTGIQTETIPYVLSGIDILAQAQTGSGKTGAFGIPLVDT 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + K        ++LIL PTRELA QV +      +   L V+++ GG   E Q + L++ 
Sbjct: 64  VRKSD----QLQSLILAPTRELAQQVGEQLRLMSRAKGLKVSIVFGGTSIERQIQDLKKR 119

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++DH NR  + ++++  LV+DEAD ML+MGFI  ++ I S +    QTLL
Sbjct: 120 PQIIVGTPGRVIDHINRRTIKLDSLTHLVLDEADEMLNMGFIEDVRFILSKITSRHQTLL 179

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   + ++S++F+++ K I+  +       I     AT A+ ++K   L   L  Q
Sbjct: 180 FSATMPKTIMELSKDFMKDYKLIKTISDEDLKPDITEY--ATIARENEKLETLIGFLDVQ 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     I+F   K+ V  L  +L  +G+    +HG+I Q  R++IL  FK  ++Q++VA+
Sbjct: 238 NP-NLAIVFGRTKRRVDELSSALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQILVAT 296

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           D+AARG+DI DV HV+NFD+P   E+Y HRIGRTGRAG+ G A T +   ++ ++  IE
Sbjct: 297 DVAARGIDISDVTHVYNFDIPQDVESYTHRIGRTGRAGKSGVAITFLNPVEMPYLKDIE 355


>gi|162148769|ref|YP_001603230.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787346|emb|CAP56941.1| putative ATP-dependent RNA helicase rhlE [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 390

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 140/352 (39%), Positives = 201/352 (57%), Gaps = 9/352 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F  LGL P++V  V  AGY  P+PIQ   IP +    DV  +A+TGTGKTA+F LP++  
Sbjct: 16  FDGLGLDPRIVANVARAGYATPSPIQALAIPPIRDGRDVEALARTGTGKTAAFALPVIHR 75

Query: 61  TILEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +   G A    P    R LIL PTRELA+Q A       +   LTVAL IGG P + Q 
Sbjct: 76  LLTGAGDAAPSGPPGHVRALILSPTRELASQTAGTVRTCIRGCGLTVALAIGGAPKDRQA 135

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  G D+L+ TPGR+LDH     + +++   LV+DEADRMLD+GF+  ++ I + +P 
Sbjct: 136 RALLDGVDILVATPGRLLDHLADATITLDHTTCLVLDEADRMLDLGFVEDVRAIAARLPV 195

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             QTLLFSATM+  +  +    L  P +I     ++    I    + T A  ++K A L 
Sbjct: 196 RHQTLLFSATMSPAISALGRQLLHKPLQIAPPEQAAPPPRIRQQVIFTPA--ARKAASLL 253

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +L+ +   +  ++F   K+    L  +L   G +  A+HG+  Q  R + L +F+ G +
Sbjct: 254 AVLRREAGGRT-MVFTRTKQAADALARTLNTGGVTAAALHGDHGQVRRDRTLDDFRRGRL 312

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            ++VA+D+ ARG+D+  V  V NFD+P + E YIHRIGRT RAGR G A +L
Sbjct: 313 LVLVATDVMARGIDVEGVALVVNFDIPEQPETYIHRIGRTARAGRRGTALSL 364


>gi|308272111|emb|CBX28719.1| DEAD-box ATP-dependent RNA helicase cshA [uncultured
           Desulfobacterium sp.]
          Length = 548

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 139/362 (38%), Positives = 218/362 (60%), Gaps = 9/362 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGI--AQTGTGKTASFVLPML 60
           F DLGLS KV+ A+   G+ +PT IQ+ TIP V+QR D   I  AQTGTGKTA+F LP++
Sbjct: 14  FKDLGLSAKVLDAINKKGFEEPTAIQVMTIP-VMQRDDTNIIVQAQTGTGKTAAFGLPLV 72

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ++  G +   M + LIL PTRELA QV++       N ++ +A + GG   + Q ++L+
Sbjct: 73  EMVSTGSS---MVQALILVPTRELAIQVSEEINSLRGNKDIVIAPIYGGQSIDQQLRRLQ 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR++DH NR  L +  IE L++DEAD ML+MGFI  I+ I       ++T
Sbjct: 130 KGVHIVVGTPGRVIDHLNRKTLKLEKIEHLILDEADEMLNMGFIEDIEEIMKHTNPDKRT 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+   ++ ++  +++  + ++V     T    E  +    A    K   L +++ 
Sbjct: 190 LLFSATIPQRIKDLAHKYMKGYEFLKVKKEQLTTNLTEQIYFEVKAH--DKFEALCRIID 247

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D    G+IFC  K +V ++   L  +G+   AIHG+I Q  R + L  FK+  + ++V
Sbjct: 248 IKDGF-YGLIFCRTKSDVDSVATHLMDRGYDAEAIHGDISQAQRERTLEKFKKQRVNILV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HV N+ +P+  E Y+HRIGRTGRAG  G A T +   + K +  I
Sbjct: 307 ATDVAARGIDVNNLTHVINYSLPHDTEAYVHRIGRTGRAGNVGTAITFITPSEYKGLMFI 366

Query: 361 EK 362
           ++
Sbjct: 367 QR 368


>gi|183981369|ref|YP_001849660.1| ATP-dependent RNA helicase RhlE [Mycobacterium marinum M]
 gi|183174695|gb|ACC39805.1| ATP-dependent RNA helicase RhlE [Mycobacterium marinum M]
          Length = 517

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 145/377 (38%), Positives = 219/377 (58%), Gaps = 18/377 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+  ++V A+ +     P  IQ  T+PL L   D+ G A+TG GKT +F +P+L  
Sbjct: 15  FAELGVRDEIVRALGERDIECPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQR 74

Query: 63  LEKG---RARVRMPRTLILEPTRELAAQVADNFE---KY-------GKNYNLTVALLIGG 109
           +  G   R     PR L++ PTREL  QV ++     KY       G    L+V  + GG
Sbjct: 75  VSSGTGVRPLTGAPRALVVVPTRELCLQVTEDLAVAAKYLTATTETGDQRPLSVVSIYGG 134

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
             +E Q + L  GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+ 
Sbjct: 135 RAYEPQIEALRAGADVVVGTPGRLLDLSQQGHLQLGGLSVLVLDEADEMLDLGFLPDIER 194

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQ 227
           I   +P  RQ++LFSATM D +  ++  F+  P  I    P S A  +T E      +A 
Sbjct: 195 ILRQIPADRQSMLFSATMPDPIITLARTFMIQPTHIRAEAPHSLAVHDTTEQFVYRAHAL 254

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
              K  L+ ++LQ+++     +IF   K+    +   L ++GF+V A+HG++ Q +R K 
Sbjct: 255 --DKVELVTRVLQARERGAT-MIFTRTKRTAQKVADELNERGFAVGAVHGDLGQVAREKA 311

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L +F+ G++ ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G A T
Sbjct: 312 LKSFRSGSVNVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVT 371

Query: 348 LVAKEDIKHIDAIEKLI 364
           LV  +++     I+K +
Sbjct: 372 LVDWDELPRWTMIDKAL 388


>gi|152981080|ref|YP_001353634.1| ATP-dependent RNA helicase DbpA [Janthinobacterium sp. Marseille]
 gi|151281157|gb|ABR89567.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 478

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 146/371 (39%), Positives = 214/371 (57%), Gaps = 8/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LSP ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 21  FSSLALSPAMLSNLDSLGYREMTPIQAQSLPVILELRDLIAQAKTGSGKTAAFGIGLLQK 80

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L      V+    L++ PTRELA QV++   +  +   N+ V  L GG P   Q   LE 
Sbjct: 81  LNPTWFAVQ---ALVICPTRELADQVSNELRRLARATENIKVLTLCGGAPMRPQIASLEH 137

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI DH +R  + ++ ++ LV+DEADRM+DMGF   I  I S  P  RQTL
Sbjct: 138 GAHIVVGTPGRIRDHISRETINLSKVQTLVLDEADRMVDMGFYEEIAGIVSACPTRRQTL 197

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D++++ S  FL++P  I+V      ++ IE  F A    Y  + A +  LL+ 
Sbjct: 198 LFSATYPDDIRRASAEFLRDPVEIKVEAQHDDSQ-IEQRFYAV--DYDDRNAAVATLLKH 254

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   + FCN K +   L   L  QGFS  A++G ++QR R +IL  F   +  ++VA
Sbjct: 255 YRPVST-LAFCNTKIHCRELAAELRAQGFSALALYGELEQRERDEILVLFANQSCSVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +G V N DV    E +IHRIGRTGR    G A +L A  + K +  IE
Sbjct: 314 TDVAARGLDIQSLGAVINVDVSKDTEVHIHRIGRTGRGQDKGLALSLCAPNEKKWVKLIE 373

Query: 362 KLIEKKVDWLN 372
           +   K V W +
Sbjct: 374 EYQNKPVQWFD 384


>gi|18410973|ref|NP_567067.1| DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana]
 gi|42572719|ref|NP_974455.1| DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana]
 gi|79315530|ref|NP_001030884.1| DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana]
 gi|75329861|sp|Q8LA13|RH11_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 11
 gi|21593670|gb|AAM65637.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|332646270|gb|AEE79791.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana]
 gi|332646271|gb|AEE79792.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana]
 gi|332646272|gb|AEE79793.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana]
          Length = 612

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 142/387 (36%), Positives = 215/387 (55%), Gaps = 17/387 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD+ L   +   +    YV+PTP+Q   IP++L   D+   AQTG+GKTA+F  P+++ 
Sbjct: 153 FADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISG 212

Query: 63  LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           + K +       +R   P  +IL PTRELA Q+ D  +K+     + V +  GG P   Q
Sbjct: 213 IMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQ 272

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++LERG D+L+ TPGR+ D   R ++ M  I  L +DEADRMLDMGF P I+ I   + 
Sbjct: 273 LRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMD 332

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYS 229
                 RQT+LFSAT   ++Q+++ +F+ N   + V    S+ + I     FV    + S
Sbjct: 333 MPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRS 392

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
               LL    ++QD     ++F   K+    L + L    F   +IHG+  Q+ R   L 
Sbjct: 393 HLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALR 452

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G A    
Sbjct: 453 SFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFF 512

Query: 350 AKEDIKHIDAIEKLIEKK----VDWLN 372
            + + +   ++ +L+++      +WL 
Sbjct: 513 NENNAQLARSLAELMQEANQEVPEWLT 539


>gi|297624335|ref|YP_003705769.1| DEAD/DEAH box helicase domain-containing protein [Truepera
           radiovictrix DSM 17093]
 gi|297165515|gb|ADI15226.1| DEAD/DEAH box helicase domain protein [Truepera radiovictrix DSM
           17093]
          Length = 526

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 138/367 (37%), Positives = 211/367 (57%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L   +  A+   G+  PT IQ  T+P  L   DV G+A+TGTGKT +F LP+   
Sbjct: 2   FHDLPLRASLSRALEAKGFSTPTTIQAATLPHALAGGDVLGLARTGTGKTLAFGLPIANR 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE   AR R PR LIL PTRELA QVA   E     +N  V  + GG  +  Q   L+RG
Sbjct: 62  LEPESARGRAPRALILTPTRELALQVAGELEWLAPEHN--VVTVYGGTGYGKQASDLKRG 119

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           AD+++ TPGR +D++ +G L ++ +E+ V+DEAD ML+ GF   ++ + +  P  RQTLL
Sbjct: 120 ADIVVATPGRAVDYYKQGVLQLSRVEVAVLDEADEMLNAGFEEDVELLLAATPQERQTLL 179

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+    + ++   L++P R  V    ++ E++ +  VA  A  + +  +L  +L   
Sbjct: 180 FSATLPRWAESLAARHLRDPLRANV----TSDESVSYDEVAIEAPLASRLGVLSDVLHVH 235

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T  + I+F   K  V  L  +L   G    A+HG+++Q  R ++L  F+   + ++VA+
Sbjct: 236 GTGAS-IVFTRTKAEVDELAKALTSLGHLAEAVHGDLNQVQRERVLERFRASQVTVLVAT 294

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIP+V  V ++  P + E Y HR GRTGRAGR G    L +  + + +  +E+
Sbjct: 295 DVAARGLDIPEVDLVVHYRFPEQPERYQHRSGRTGRAGRAGTVVLLYSPRERRELALLER 354

Query: 363 LIEKKVD 369
            I ++++
Sbjct: 355 AIARRIE 361


>gi|221133951|ref|ZP_03560256.1| ATP-dependent RNA helicase RhlB [Glaciecola sp. HTCC2999]
          Length = 426

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 138/385 (35%), Positives = 227/385 (58%), Gaps = 9/385 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL +   ++ A+ +A +   TPIQ  ++P ++   D+ G AQTGTGKT +F++     
Sbjct: 11  FSDLKIHQSIIDALNEANFEYCTPIQALSLPPLIDELDIAGQAQTGTGKTIAFLVATFHY 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +   + P+ +I+ PTRELA Q+ ++ E   K+  LT+ L+ GG  +E Q + L  G
Sbjct: 71  LLTHKNSEKGPKAMIMAPTRELAVQIYNDAELLSKHTGLTLGLIYGGEGYEDQRQTLTNG 130

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTRQT 180
            D++I T GRILD++ +G   +N++++ V+DEADRM D+GFI  I+ +   +P    R +
Sbjct: 131 VDIIIGTTGRILDYYKQGIFSLNHLQVAVLDEADRMFDLGFIKDIRYLFRRMPNATERLS 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT++  +Q+++   + NP  +++     TA  ++      Y     K  LL  LL+
Sbjct: 191 MLFSATLSYRVQELAYEHMNNPTHVQIEPEKKTATRVQEELF--YPSDDDKIRLLLTLLE 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   K  ++F N K +   +   L   G  V  + G++ Q+ RM I+  F +G + ++V
Sbjct: 249 NEWPEK-AVVFANTKFSCETVAAWLMADGHRVGLLSGDVPQKKRMSIMEGFAKGKLDILV 307

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL I  V HVFNFD+P+ AE+Y+HRIGRTGRAG+ G A +   ++   ++  I
Sbjct: 308 ATDVAARGLHIEKVTHVFNFDLPDDAEDYVHRIGRTGRAGKSGHAISFACEKYALNLPEI 367

Query: 361 EKLIEKKV---DWLNGD-LSSLNPP 381
           E  IE  +   D+ +G  L+ L PP
Sbjct: 368 EAYIEHSIPVTDYDSGALLTDLTPP 392


>gi|33861657|ref|NP_893218.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634234|emb|CAE19560.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 592

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 211/368 (57%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G +  ++ ++   GY  PTPIQ   IP ++   D+ G AQTGTGKTA+F LP++  
Sbjct: 52  FACFGFNKLILNSLESKGYKTPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEK 111

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLER 121
           LE  +      + L++ PTRELA QVAD+F+ Y  ++ NL    + GG  F  Q   L+R
Sbjct: 112 LENNKES--NAKVLVMTPTRELATQVADSFKSYSAESTNLRTLAIYGGTDFRNQISSLKR 169

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGRI+DH  +G   +NNI  LV+DEAD ML MGF+  I+ I   +P  +Q +
Sbjct: 170 KTDIVVGTPGRIMDHIRQGTFKINNISCLVLDEADEMLKMGFLEDIEWIIDKLPENKQMV 229

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +E++ +++ +L  P  I + +     + I   ++    Q   K   L+++L+ 
Sbjct: 230 LFSATMPNEIRNIAKKYLNEPAEILIKSVKQETQLITQKYIN--VQRHHKLDALKRILEI 287

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T +  IIF   K    ++  +LE  G SV  ++G+I Q  R   +   K+G I ++VA
Sbjct: 288 --TNEGVIIFVRTKLLTTSIAEALENSGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVA 345

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D P   E Y HRIGRTGRAGR G+A   V + +   +  +E
Sbjct: 346 TDVAARGLDVERIKLVINYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLE 405

Query: 362 KLIEKKVD 369
                K++
Sbjct: 406 NSTRNKIE 413


>gi|312881437|ref|ZP_07741232.1| ATP-dependent RNA helicase RhlB [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370919|gb|EFP98376.1| ATP-dependent RNA helicase RhlB [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 433

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 143/386 (37%), Positives = 222/386 (57%), Gaps = 9/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FADL L P++V  +++ G+   TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADLNLHPQIVTGLMNKGFNFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L + E    +V  PR +I+ PTRELA Q+ ++ +   ++  +  AL  GG  +E Q  K
Sbjct: 71  LLNVPEHTGRKVTQPRAIIMAPTRELAIQIYNDAKPLRESTGIRTALAYGGESYEKQLAK 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
           LE G D+LI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LEDGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R  +LFSAT++  +Q+++   + NP+ + V     T   I+      Y     K  LLQ
Sbjct: 191 DRLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELF--YPSNEHKMPLLQ 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ ++     IIF N K    ++   L      V  + G++ Q+ R +IL  F  G +
Sbjct: 249 TLIE-EEWPDRAIIFANTKHKCESIWGHLAADEHRVGLLTGDVPQKKRERILEQFTRGDV 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   ++   +
Sbjct: 308 DILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSVSFACEDYAVN 367

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPL 382
           + AIE+ IE  +     D S+L P L
Sbjct: 368 LPAIEEYIEHTIPVSEYDPSALIPDL 393


>gi|170731293|ref|YP_001776726.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa M12]
 gi|167966086|gb|ACA13096.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
          Length = 544

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 139/375 (37%), Positives = 224/375 (59%), Gaps = 10/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F+   L P ++  +  AG+   TPIQ  T+P+ L   D+ G AQTGTGKT +F++ ++
Sbjct: 10  LNFSSFDLHPALLTGLTRAGFTLCTPIQALTLPVALAGSDIAGQAQTGTGKTLAFLVVVV 69

Query: 61  TILEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L      V      PR LIL PTRELA Q+ ++  K+G N  L  AL+ GG+ ++ Q 
Sbjct: 70  NRLLSRPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQR 129

Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L +GADV+I TPGR++D+  + +++ +   EI V+DEADRM D+GFI  I+ I   +P
Sbjct: 130 EMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLP 189

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
              +RQTLLFSAT++  + +++  ++  P+++   T S T   +       +    +K  
Sbjct: 190 ERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIY--FPAEEEKIP 247

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  LL   + M+  I+F N K  V  +  +L++ G+ V  + G++ QR R  +L+ F++
Sbjct: 248 LLLGLLSRSEGMRT-IVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQK 306

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +  
Sbjct: 307 GQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERY 366

Query: 354 IKHIDAIEKLIEKKV 368
              +  IE  IE+K+
Sbjct: 367 AMSLPDIEAYIEQKI 381


>gi|149191365|ref|ZP_01869617.1| ATP-dependent RNA helicase [Vibrio shilonii AK1]
 gi|148834782|gb|EDL51767.1| ATP-dependent RNA helicase [Vibrio shilonii AK1]
          Length = 430

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 146/383 (38%), Positives = 223/383 (58%), Gaps = 11/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FA+L L P+++  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FAELDLQPQIIEGLEKKGFEYCTPIQALALPVLLAGRDIAGQAQTGTGKTLAFLTATFNH 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT  E    +   PR +I+ PTRELA Q+ ++ +   ++  L  AL  GG  ++ Q  K
Sbjct: 71  LLTTPEHDGRKPNQPRAIIMAPTRELAIQIQNDAKPLIESTGLKTALAYGGDSYDKQLAK 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
           LE G D+LI T GRI+D + +    +NNI+ +V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LEEGVDILIGTCGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
            R  +LFSAT++  +Q+++   + NP+ + V     T   I E  F   Y   ++K ALL
Sbjct: 191 DRLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIKEELF---YPSNNEKMALL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R KIL  F  G 
Sbjct: 248 QTLVE-EEWPDRAIIFANTKHKCEKVWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   
Sbjct: 307 VDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAI 366

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
           ++ AIE+ IE ++   + D S+L
Sbjct: 367 NLPAIEEYIEHQIPVSDYDSSAL 389


>gi|124360402|gb|ABN08415.1| Helicase, C-terminal [Medicago truncatula]
          Length = 499

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 144/424 (33%), Positives = 225/424 (53%), Gaps = 33/424 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D      V+  V  AG+V+PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP +  
Sbjct: 97  FSDAAFPDYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 156

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                IL+ G      P  L+L PTRELA Q+     K+G +  +    + GG+P   Q 
Sbjct: 157 VNAQPILDPGDG----PIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQV 212

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L++G +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 213 RDLQKGVEIIIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRP 272

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCA 233
            RQTL +SAT   E+++++  FL NP ++ + +    A      +V    +   Y K   
Sbjct: 273 DRQTLYWSATWPKEVEQLARQFLYNPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVK 332

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL+ ++     +    IF + KK    +   L   G+   +IHG+  Q  R  +LS FK 
Sbjct: 333 LLEDIMDGSRIL----IFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKS 388

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +M A+D+AARGLD+ DV +V N+D P   E+Y+HRIGRTGRAG  G A+T     +
Sbjct: 389 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAAN 448

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            +    +  ++E+    ++ +L+++               R   P P  S GF  R K++
Sbjct: 449 ARFAKELISILEEAGQRVSSELAAMG--------------RGAPPPP--SGGFRDRGKSF 492

Query: 414 SSQK 417
            S +
Sbjct: 493 GSGR 496


>gi|329945971|ref|ZP_08293658.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528419|gb|EGF55397.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 557

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 140/411 (34%), Positives = 224/411 (54%), Gaps = 21/411 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD G+ P++  A+   G   P PIQ  T+P+ L+  D+ G A+TGTGKT  F +P+L  
Sbjct: 68  FADFGVEPEICEALAAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMD 127

Query: 63  L----EKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                E+G         P+ L++ PTRELA QVA+          + +  + GG  +E Q
Sbjct: 128 TLGPGEEGWDEDPASGSPQGLVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEPQ 187

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + LERGA+V++ TPGR++D  +RG L + ++  +V+DEAD MLD+GF+P ++ I +   
Sbjct: 188 IEDLERGAEVVVGTPGRLIDLMDRGVLDLTHVTTVVLDEADEMLDLGFLPDVEKILARTR 247

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234
             R T+LFSATM   +  ++  ++  P  I    P     T++      Y  +S  K  +
Sbjct: 248 ADRHTMLFSATMPGAVVTLARRYMTRPTHIRAQDPGDEGMTVQTVQQVVYRTHSMNKVEV 307

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + ++LQ++   +  IIF   K+    +   L  +GF+  A+HG++ Q +R + L  F+  
Sbjct: 308 VARILQAEGRGRT-IIFARTKRTAARVADDLRARGFATAALHGDLGQGAREQALRAFRND 366

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+  P   + Y+HRIGRTGRAG  G A T V  +D+
Sbjct: 367 KVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFVDWDDV 426

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
                I K +   ++           P+E    ++H  +  +  IP+K TG
Sbjct: 427 PRWRIIAKALGLPIE----------EPVETYHTSEHLFS--DLSIPEKVTG 465


>gi|241959442|ref|XP_002422440.1| ATP-dependent rRNA helicase, putative; ribosomal RNA-processing
           protein, putative [Candida dubliniensis CD36]
 gi|223645785|emb|CAX40447.1| ATP-dependent rRNA helicase, putative [Candida dubliniensis CD36]
          Length = 499

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 145/395 (36%), Positives = 224/395 (56%), Gaps = 16/395 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L P ++ ++    + KPTPIQ + IP  L+  D+ G+AQTG+GKTA+F +P+L  
Sbjct: 88  FKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQS 147

Query: 63  LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L       + P   L+L PTRELA Q+ D F+  G +  L  + ++GG+    Q + L R
Sbjct: 148 L----WHAQQPYFALVLAPTRELAFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMR 203

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGRI+DH    K   + N++ LV+DEADR+LDM F P +  I  ++P  R T
Sbjct: 204 KPHIIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRIT 263

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT++++K+    L NP ++ V++   TA+ +    +     Y  K  +L  LL 
Sbjct: 264 YLFSATMTNKIEKLQRASLHNPVKVSVSSKYQTADNLIQSMMLVNDGY--KNTILIHLL- 320

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   K+ I+F     +           GF+   +HG + Q  R+  L+ FK     ++V
Sbjct: 321 NEFIGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILV 380

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V N+D+P  ++ YIHR+GRT RAGR GK+ +L+ + D++    I
Sbjct: 381 ATDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRI 440

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           E ++ KK+   +       PP E +D A H H  K
Sbjct: 441 ENVLGKKLPKED------KPPKEILD-ALHVHVDK 468


>gi|119614682|gb|EAW94276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_a [Homo
           sapiens]
          Length = 828

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 145 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 204

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 205 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 260

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 261 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 320

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 321 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 380

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I
Sbjct: 381 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 439

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 440 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 496


>gi|224094640|ref|XP_002195464.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Taeniopygia
           guttata]
          Length = 451

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 143/369 (38%), Positives = 223/369 (60%), Gaps = 10/369 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+  PT IQI+ IP+ LQ  DV G+A+TG+GKT +F LP+L 
Sbjct: 26  FKDLGVT-DVLCKACDQLGWKVPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFALPILQ 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L +   R+     L+L PTRELA Q+++ FE  G +  + T A+++GGI   +Q+  L 
Sbjct: 85  ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQTSAVIVGGIDTMSQSLALA 141

Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   V+I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 142 KKPHVIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRK 201

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT ++QK+    L+NP +  V++   T E ++  ++   +++  K + L  +L
Sbjct: 202 TFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDSYLVYIL 259

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     ++
Sbjct: 260 -NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSIL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GK+ T V + D++    
Sbjct: 319 LATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQR 378

Query: 360 IEKLIEKKV 368
           IE LI KK+
Sbjct: 379 IEHLIGKKL 387


>gi|167623474|ref|YP_001673768.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167353496|gb|ABZ76109.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 442

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 142/371 (38%), Positives = 219/371 (59%), Gaps = 14/371 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGL P+++  +    Y  PT IQ  TIP VL   DV G A TG+GKTA+F LP++ 
Sbjct: 24  DFTQLGLMPELLETLKLLSYTTPTAIQSHTIPAVLNGKDVLGGAITGSGKTAAFALPIIQ 83

Query: 62  ILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQN 116
            + + + R +      +LIL PTRELA QVAD+F +Y +    NL    + GG+    Q 
Sbjct: 84  KIAQAKPRAKEGNYVSSLILVPTRELAQQVADSFMRYSQLIKPNLKTLAVYGGVSTNTQM 143

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GAD+++ TPGR++D  +   L ++    LV+DEADRML +GF   +  + + +P 
Sbjct: 144 LSLRGGADIVVATPGRLIDLISSNALKLDKTTTLVLDEADRMLSLGFTEELNELLAKLPK 203

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T+QTLLFSAT  +E+++++++ L NP  +EV   SS   T+    +      ++K ALL 
Sbjct: 204 TKQTLLFSATFPEEVRELTDSLLNNP--VEVQLQSSEESTLVQRVITV--NRNRKTALLA 259

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++  +  +  +IF + K +   L   LE  G +    H +  Q +R ++L  FK G I
Sbjct: 260 ELIK-DNQWQQVLIFASAKYSCNRLAQKLENAGITAEVFHSDKGQGARNRVLEGFKSGEI 318

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARG+DI  +  V NF++P    +Y+HRIGR+GRAG  G A +L++ ++ +H
Sbjct: 319 SVLIATDIAARGIDIEKLPIVINFELPRSPADYMHRIGRSGRAGEAGLAMSLISHDEYQH 378

Query: 357 IDAIEKLIEKK 367
                KLIEKK
Sbjct: 379 F----KLIEKK 385


>gi|297704172|ref|XP_002828993.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Pongo
           abelii]
          Length = 483

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 157/416 (37%), Positives = 233/416 (56%), Gaps = 17/416 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178
             V+I TPGR+ DH        +  I  LV+DEADR+L+ G   F   ++ I + VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPAHR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+TD L+++       P   E   P ST E ++  ++    +   K A L  L
Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKV--KDAYLVHL 238

Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q  QD  ++   IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK   
Sbjct: 239 IQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSI 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI 
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            + AIE+ I+KK++  + + + +   L ++++      R+   I  ++  FD +K+
Sbjct: 359 LVHAIEEQIKKKLEEFSVEEAEVLQILTQVNV-----VRRECEIKLEAAHFDEKKE 409


>gi|237731652|ref|ZP_04562133.1| ATP-dependent RNA helicase DbpA [Citrobacter sp. 30_2]
 gi|226907191|gb|EEH93109.1| ATP-dependent RNA helicase DbpA [Citrobacter sp. 30_2]
          Length = 457

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 141/365 (38%), Positives = 216/365 (59%), Gaps = 8/365 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY++ TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   A +   ++L+L 
Sbjct: 22  GYLEMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHID---AALFQTQSLVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF AQ   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT  + +  +S   
Sbjct: 139 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            QNP  IE++T  +    IE  F  T +    K  LLQ+LL SQ    + ++FCN KK+ 
Sbjct: 199 QQNPLTIEIDTVDAL-PAIEQQFFETSSH--GKIPLLQKLL-SQHQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L   G S  ++HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           NF++    E ++HRIGRT RAG  G A +  A E+ +  + + ++++ K++WL    +  
Sbjct: 315 NFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANILSEMLQLKLNWLTAPANGS 374

Query: 379 NPPLE 383
             PLE
Sbjct: 375 ILPLE 379


>gi|290477139|ref|YP_003470054.1| putative ATP-dependent helicase with nucleoside triP hydrolase
           domain [Xenorhabdus bovienii SS-2004]
 gi|289176487|emb|CBJ83296.1| putative ATP-dependent helicase with nucleoside triP hydrolase
           domain [Xenorhabdus bovienii SS-2004]
          Length = 427

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 144/390 (36%), Positives = 226/390 (57%), Gaps = 11/390 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F+D  L PKV+ A+   G+   TPIQ  T+P  ++  DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVIEALDKKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKTLAFLTSTFHY 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT       +   PR LI+ PTRELA Q+  + E+  +   L + L  GG  ++ Q K 
Sbjct: 71  LLTHPAAADHKTNQPRALIMAPTRELAVQIYSDAEELAEATGLKMGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
           LE G D++I T GR++D+  +G + +N ++++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDIVIGTTGRLIDYTKQGYVNLNAVQVVVLDEADRMYDLGFIKDIRWLFRRMPVAA 190

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R  LLFSAT++  +++++   + +P+ +EV     T   I+      Y    +K  LLQ
Sbjct: 191 QRMNLLFSATLSYRVRELAFEQMNSPEYVEVEPLQKTGHRIQEELF--YPSNEEKMRLLQ 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL+ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G +
Sbjct: 249 TLLE-EEWPDRCIIFANTKHRCEDIWAHLAADGHRVGLLTGDVAQKKRLRILEEFSLGNL 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   +
Sbjct: 308 DILVATDVAARGLHIPFVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALN 367

Query: 357 IDAIEKLIEKK--VDWLNGDLSSLNPPLEK 384
           + +IE+ I+ +  V   N D   ++ P+ K
Sbjct: 368 LTSIEEYIQHQIPVSKYNSDALLMDLPVPK 397


>gi|224068070|ref|XP_002188600.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Taeniopygia
           guttata]
          Length = 1031

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 151/446 (33%), Positives = 246/446 (55%), Gaps = 23/446 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ A+   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 374 WVQCGISMKILTALKKHGYEKPTPIQTQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRH 433

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 434 IMDQRALEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           V   RQT++FSAT    ++ ++   L  P  ++V   S     +E   V    + +K   
Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQ-HVIVIEEENKFLK 608

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL+ L   Q+   + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK 
Sbjct: 609 LLELLGHYQEK-GSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKN 667

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++ 
Sbjct: 668 GTCKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQ 727

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            ++   I K +E     L+G+   + P LEK+     +  +    + +KS+GF  +   +
Sbjct: 728 ARYAGDIIKALE-----LSGN--PIPPDLEKLWADFKDQQKAEGKLIKKSSGFSGKGFKF 780

Query: 414 SSQKSHIPLKESEKISKLQQDIQEND 439
              +  +   E +K+ K    +Q++D
Sbjct: 781 DETEQALA-NERKKLQKAALGLQDSD 805


>gi|261212229|ref|ZP_05926515.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341]
 gi|260838837|gb|EEX65488.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341]
          Length = 421

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 134/368 (36%), Positives = 214/368 (58%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADL L P ++ A+ + G+ +PT +Q + IP  L   DV   A TGTGKTA+F +P L  
Sbjct: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIPALQY 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +    R LIL PTRELA QVA+  +   KN  L +  + GG+ ++     L  
Sbjct: 65  LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L++ +  +     IE L++DEADRMLDMGF P +  +++   + +QTL
Sbjct: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTL 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+    ++  + + L++P  ++   P    + I   +         K  LL+++L 
Sbjct: 185 LFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWY-HRADDMPHKVELLKKILT 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   +  I+F   ++ + +L   LEK       I G + Q  R   ++ F+EG + +++
Sbjct: 244 EQ--AERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFREGDVNILL 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+PD+ HV NFD+P  A+ Y+HRIGRTGRAG+ G A +LV   D   +  +
Sbjct: 302 ATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARV 361

Query: 361 EKLIEKKV 368
           E+ I+++V
Sbjct: 362 ERYIKEEV 369


>gi|256830240|ref|YP_003158968.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579416|gb|ACU90552.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
           DSM 4028]
          Length = 530

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 215/363 (59%), Gaps = 11/363 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F++LGLS   + A+   G+ +PTPIQIKTIP VL    D+   AQTGTGKTA+F LP+L 
Sbjct: 4   FSELGLSELSIQALSRKGFEEPTPIQIKTIPAVLTGDSDIVAQAQTGTGKTAAFGLPLLE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+     VR  + L+L PTRELA QVA+          + VA + GG   E Q + L++
Sbjct: 64  MLDPD---VRTVQALVLAPTRELAIQVAEEVNSLRGGRTINVAPIYGGQSMEIQLRSLKK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH  RG L ++ I  L++DEAD ML+MGF+  +  I       ++T+
Sbjct: 121 GVSVVVGTPGRVLDHLRRGSLNLSGIRFLILDEADEMLNMGFLDDVLEIMEQTATEKRTM 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           LFSATM  E+ ++++ ++ + + I+  +   TA   +  +  VA   ++   C ++    
Sbjct: 181 LFSATMPPEILRIAKKYMGDYQIIKAVSEQLTATQTDQIYFEVAMSDKFEALCRII---- 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +    G++F   K +   +   L ++G+    +HG++ Q  R K+L  FK+  + ++
Sbjct: 237 -DMEPDFYGLVFTRTKIDADAVSQRLMERGYEADTLHGDMSQSLREKMLIKFKKKLVTIL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ D+ HV NFD+P+  E Y+HRIGRTGRAG+ G A T +   + + +  
Sbjct: 296 VATDVAARGIDVHDLTHVINFDLPHDPEAYVHRIGRTGRAGKQGIAITFITPSEYRRLQF 355

Query: 360 IEK 362
           I K
Sbjct: 356 ISK 358


>gi|149639807|ref|XP_001507068.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX27
           (DEAD box protein 27) [Ornithorhynchus anatinus]
          Length = 742

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 162/469 (34%), Positives = 250/469 (53%), Gaps = 29/469 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ +   D+C  A TGTGKTA+F LP+L
Sbjct: 164 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGMLGKDICACAATGTGKTAAFALPVL 223

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++  +  N+T  L +GG+  + Q   L 
Sbjct: 224 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFSNVTTCLAVGGLDVKTQEAALR 283

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            G D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 284 AGPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIKMCSHHRQ 343

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   FV            +   L
Sbjct: 344 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAVVSAL 403

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 404 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDVL 463

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K +  
Sbjct: 464 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 523

Query: 360 IEKL-----------------IEKKVDWLNGDLSS-LNPPLEKIDIAQHNHARKNNP--I 399
           I K                     K++ L  D+ + L    E+ ++ QH+ A+ N    +
Sbjct: 524 IVKTAKAPVKARILPQDVILKFRDKIEKLEKDVYAVLRLEAEEKEM-QHSEAQINTAKRL 582

Query: 400 PQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
            +K  G    + N   ++S    +E  K  K+ + +QE D   L  RG 
Sbjct: 583 LEKGKG----EANEEPRRSWFQSREERKKEKIAKALQEFD---LALRGK 624


>gi|307255928|ref|ZP_07537729.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307260381|ref|ZP_07542088.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306861196|gb|EFM93189.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865632|gb|EFM97513.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 445

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 214/368 (58%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P+++ A+   GY +PT +Q +TIP  L   D+ G A TGTGKTA+F+LP +
Sbjct: 8   MTFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAI 67

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QVA+  + + +   L++A + GG+ ++   +  
Sbjct: 68  QHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEVF 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR++ +          +EIL+ DEADRML MGF    + I +   + + 
Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187

Query: 180 TLLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           T LFSAT+  EL    ++  L NP +I+        + I+  +         K  LL +L
Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHA-DNLEHKTKLLARL 246

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + + + M+  I+F  ++++V  L  +L K+G     + G++ Q  R + ++  KEG + +
Sbjct: 247 ISTME-MEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKEGVVNV 305

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI DV +V NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D K + 
Sbjct: 306 LVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLG 365

Query: 359 AIEKLIEK 366
            I++  E+
Sbjct: 366 KIKRYTEE 373


>gi|187935259|ref|YP_001885538.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723412|gb|ACD24633.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
           Eklund 17B]
          Length = 480

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 220/371 (59%), Gaps = 6/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    LS +++ A+ + GY  P+ +Q K IP +L+  D+   +QTG+GKTASF +P+  
Sbjct: 4   EFNKFELSGELLKAIDNLGYKTPSEVQEKAIPEILRNKDLVVKSQTGSGKTASFGIPLCE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +   P+ L+L PTRELA Q++++    G+   +    + G      Q +KL++
Sbjct: 64  KIDWDENK---PQVLVLAPTRELAVQISEDISNIGRYKRINCVPIFGKQSIMDQERKLKQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH +RG L ++     VIDEAD ML+MGFI  ++ I   +P  R TL
Sbjct: 121 KTHIVVGTPGRVLDHIDRGSLDVSKTNYFVIDEADEMLNMGFIKQVEAIIRRIPKKRVTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ +E++ + +  +  P  I + + + T++ + H   A +  Y++K  LL  +L S
Sbjct: 181 LFSATIPEEIKNLCDKHMNRPIDIAIKSQNLTSDNVSH--YAYHVGYNQKLDLLNNILIS 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  ++FC  K+NV  +   L K+G+S   IHG + Q+ R+  +  F+ G  +++VA
Sbjct: 239 E-MPETSVVFCRTKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFRILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RG+DI  + HV N+D+P   E Y+HRIGRTGRAG  G A T       ++++ IE
Sbjct: 298 TDIASRGIDIEGITHVINYDIPVEKEAYVHRIGRTGRAGAKGVALTFCKDSGDRYLNEIE 357

Query: 362 KLIEKKVDWLN 372
           + I  K++  N
Sbjct: 358 EYIGFKLEVKN 368


>gi|242239282|ref|YP_002987463.1| ATP-dependent RNA helicase DbpA [Dickeya dadantii Ech703]
 gi|242131339|gb|ACS85641.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
          Length = 457

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 147/370 (39%), Positives = 217/370 (58%), Gaps = 9/370 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA+L   P      L+A GY+  TPIQ   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FAELNALPAEQLTTLNALGYLTMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+ GR   +   +L+L PTRELA QVA+   +  +   N+ V  L GG+PF  Q   L 
Sbjct: 64  HLDAGRFNTQ---SLVLCPTRELADQVANELRRLARYMPNIKVLTLCGGVPFSIQRDSLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +  + ++ ++ LV+DEADRMLDMGF   I  + + VP  RQT
Sbjct: 121 HAPHIIVATPGRLLDHLEKETVNLDALQTLVLDEADRMLDMGFADAIDAVIAHVPDQRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D +  +S     +P  IE++T       +E  F       S K  LLQ+LL 
Sbjct: 181 LLFSATWPDAIAAISHRIQHDPLVIEIDTVDEL-PAVEQQFYEV--SRSGKLDLLQKLL- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++   + ++FCN KK+   +  +L     SV A+HG+++QR R + L  F  G+ +++V
Sbjct: 237 SREQPASCVVFCNTKKDCQAVYDALTASHQSVLALHGDMEQRDRDQTLVRFANGSSRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E +IHRIGRT RAG  G A +L A E+ +  +A+
Sbjct: 297 ATDVAARGLDIKALEMVVNFELSWDPEVHIHRIGRTARAGESGLAISLCAPEEAQRANAL 356

Query: 361 EKLIEKKVDW 370
           E+++  K+ W
Sbjct: 357 EEMLNLKLSW 366


>gi|149912233|ref|ZP_01900811.1| ATP-dependent RNA helicase [Moritella sp. PE36]
 gi|149804692|gb|EDM64744.1| ATP-dependent RNA helicase [Moritella sp. PE36]
          Length = 421

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 136/370 (36%), Positives = 215/370 (58%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  L L P+++ A+ D   V+PT IQ + +P  ++  D+   A TGTGKT +F+LP +
Sbjct: 1   MDFESLDLDPQLIVALTDNNLVQPTLIQQQVLPTAMEGRDILASAPTGTGKTLAFLLPAI 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R  +   R LIL PTRELA+QV    +      +  V+++ GG+ +    + L
Sbjct: 61  QHLLDFPRRELGPGRVLILTPTRELASQVFQQAKMLAAYTDHKVSMVTGGVDYALHAEVL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   D++I TPGR+L++  R       IE+L++DEADRMLDMGF   ++ IT+ +   +Q
Sbjct: 121 KNNLDIVIATPGRLLEYIRRDAFECAAIEVLILDEADRMLDMGFYDDVKRITNEMTRRQQ 180

Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           T+LFSAT+    + + +E  L  P     N PS   +   H F+     ++ K ALL   
Sbjct: 181 TMLFSATLEGRGIDRFAEELLNEPVEFTAN-PSRREKAKIHQFMHHVDNHAHKQALLVHW 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ + T ++ I+F   ++ +  L   L+ Q      + G +DQ  R + L+ FK   +++
Sbjct: 240 LRDESTTRS-IVFVKTRERLAELVSYLQSQDIPCAYLRGEMDQAKRTRSLNQFKNDKVKV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+ DV HVFNFD+P  AE Y+HRIGRT RAG+ G A +LV   D++   
Sbjct: 299 LIATDVAARGIDVQDVSHVFNFDLPRSAEIYVHRIGRTARAGKKGTAISLVEAHDLRIFG 358

Query: 359 AIEKLIEKKV 368
            IE+  E+ +
Sbjct: 359 KIERYTEETI 368


>gi|254283223|ref|ZP_04958191.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium NOR51-B]
 gi|219679426|gb|EED35775.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium NOR51-B]
          Length = 409

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 140/369 (37%), Positives = 216/369 (58%), Gaps = 10/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L  +++  V +AG+   +PIQ + +P  LQ HD  G AQTGTGKTA+F++ +   
Sbjct: 29  FHDLDLREEIMHGVAEAGFEYCSPIQAQILPHTLQGHDAIGKAQTGTGKTAAFLITIFND 88

Query: 63  LE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L     +G   +  PR +I+ PTREL  Q+A + E  G++  L    LIGG  ++ Q +K
Sbjct: 89  LLCNPLEGERFLAEPRAVIIAPTRELVMQIAADAEDLGRHTGLNTVALIGGADYQKQLQK 148

Query: 119 LERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           + R   D+++ TPGR++D   R  L ++ +E LV+DEADRMLDMGFIP ++ I    P  
Sbjct: 149 VSRRVTDLIVATPGRLIDFVERRDLYLDRVETLVLDEADRMLDMGFIPQVKRIVRSTPRK 208

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T ++  ++  +  +P  IE+       ++++   V   A + +   LL
Sbjct: 209 EDRQTLLFSATFTPDIMNLARQWTFDPVTIEIEPDHVATDSVDQK-VYLVASHERMRVLL 267

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L    D   + I+F N++  V N+   L K G S   + G ++Q  R K L+ FK+GT
Sbjct: 268 NVL--RSDEATSVIVFANRRDQVRNVYEKLRKAGISCGILSGEVNQAKRTKTLAQFKDGT 325

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+A RG+ +  V HV N+++P   E+Y+HRIGRTGRAG  G + +  +++D  
Sbjct: 326 ISVLVATDVAGRGIHVDGVSHVVNYNLPEDPEDYVHRIGRTGRAGATGISISFASEDDGF 385

Query: 356 HIDAIEKLI 364
            +  IE L+
Sbjct: 386 LLPDIEALL 394


>gi|198274601|ref|ZP_03207133.1| hypothetical protein BACPLE_00753 [Bacteroides plebeius DSM 17135]
 gi|198272048|gb|EDY96317.1| hypothetical protein BACPLE_00753 [Bacteroides plebeius DSM 17135]
          Length = 424

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 135/371 (36%), Positives = 218/371 (58%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L   V+ A+    + + TP+Q  TIP++L+  D+ G+AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELNLEDSVLDALDAMNFQECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             L KG         +I+ PTRELA Q+    E +     ++   + GG   I FE + K
Sbjct: 61  NQLSKGGYPEDAINCIIMSPTRELAMQIDQQMEGFSYFMPVSSVAVYGGNDGIRFEQEKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q++++  L +P  +++       + I+  ++   AQ   K  ++Q 
Sbjct: 181 RQTIMFSATMPTKIQQLAKTILHDPVEVKLAVSKPAEKIIQAAYICYEAQ---KLGIIQS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L QSQ   +  IIF + K  V  +  +L++   +V  +H +++Q  R +I+  F+   I 
Sbjct: 238 LFQSQQP-ERVIIFASSKLKVKEVTKALKRMKLNVGEMHSDLEQSQREEIMHEFRNRRID 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V++ +    
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGCAITFVSETEQTRF 356

Query: 358 DAIEKLIEKKV 368
             IE  + K +
Sbjct: 357 KQIETFLGKDI 367


>gi|313899722|ref|ZP_07833225.1| ATP-dependent RNA helicase DbpA [Clostridium sp. HGF2]
 gi|312955337|gb|EFR37002.1| ATP-dependent RNA helicase DbpA [Clostridium sp. HGF2]
          Length = 477

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 217/366 (59%), Gaps = 10/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L   +  A+   GY  P P+Q   IPL+L++ D+   ++TG+GKTASF +P++
Sbjct: 1   MKFEDYKLDASICEALHTLGYQSPLPVQEAVIPLMLEKKDILVKSRTGSGKTASFAIPII 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
              I E+     R P+ L+L PTRELA Q+   F+  G    +  A + G  PF  Q + 
Sbjct: 61  QDLIWEE-----RSPQALVLSPTRELALQIKGEFDNIGAYKRIKTAAVFGKQPFRFQAQD 115

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +++   V+  TPGR+LDH  +G L    I  ++IDEAD ML+MGFI  +Q I   +P   
Sbjct: 116 VKQRTHVVAGTPGRVLDHLEQGTLRTEKIRYIIIDEADEMLNMGFIETVQKIFFRLPKNA 175

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
              +FSAT+  E+Q+++ +FL+  + +E+ + +S +E + H +     ++ K  ALL+  
Sbjct: 176 SVCMFSATLPQEIQELAHDFLKQAEVVEIESQTSVSEQMHH-YAYRLKEHEKPQALLK-- 232

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  ++  ++ IIF   +++V  +C  L  +G SV  +HG + Q  R++ + +F+ G +++
Sbjct: 233 LLCRELPESCIIFAKTQEHVREICRMLYDKGISVDQLHGGMLQEDRLENMKDFRLGKLRI 292

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+AARG+DI DV H+ N+D+PN+ E YIHRIGR+ R  R G A + V++ D   + 
Sbjct: 293 LTATDVAARGIDIQDVTHIINYDMPNKKETYIHRIGRSARLDRSGTAISFVSQYDDFRLQ 352

Query: 359 AIEKLI 364
            +E+ +
Sbjct: 353 ELEEYL 358


>gi|311249333|ref|XP_003123579.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Sus
           scrofa]
 gi|311249349|ref|XP_003123587.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Sus
           scrofa]
          Length = 483

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 156/416 (37%), Positives = 233/416 (56%), Gaps = 17/416 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178
             V+I TPGR+ DH        +  I  LV+DEADR+L+ G   F   ++ I + VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+TD L+++       P   E   P  T E ++  ++    +   K A L  L
Sbjct: 181 QTLLFSATLTDTLRELQSLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKV--KDAYLVHL 238

Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q+ QD  ++   IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK   
Sbjct: 239 IQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSI 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI 
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            + AIE+ I+KK++  + + + +   L ++++      R+   I  ++  FD +K+
Sbjct: 359 LVHAIEEQIKKKLEEFSVEEAEVLQILTQVNV-----VRRECEIKLEAANFDEKKE 409


>gi|226490952|ref|NP_001152536.1| ATP-dependent RNA helicase DDX23 [Zea mays]
 gi|195657271|gb|ACG48103.1| ATP-dependent RNA helicase DDX23 [Zea mays]
 gi|224030151|gb|ACN34151.1| unknown [Zea mays]
          Length = 758

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 134/373 (35%), Positives = 208/373 (55%), Gaps = 25/373 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +++  L  +++ A+  AGY KP+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPML+ 
Sbjct: 339 WSESKLGTELLRAIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSY 398

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + +            P  +++ PTRELA Q+ +   K+     + V  ++GG   E Q  
Sbjct: 399 ITRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQGF 458

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           K+ +G +++I TPGR+LD   R   ++N    +V+DEADRM+DMGF P +  +   +P +
Sbjct: 459 KIRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 518

Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
                            R T +FSATM   +++++  +L+NP  + + T     + I   
Sbjct: 519 NLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQN 578

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
            +    + S+K   LQ++L      K  I+FCN KK        L+K GF V  +HG   
Sbjct: 579 VI--MVKESEKMPRLQKILTDLGD-KTAIVFCNTKKTADMRAKDLDKSGFRVTTLHGGKS 635

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q  R   L  F+     ++VA+D+A RG+DIPDV HV N+++P+  + Y HRIGRTGRAG
Sbjct: 636 QDQREISLDGFRNRRFNVLVATDVAGRGIDIPDVAHVINYEMPSSVDTYTHRIGRTGRAG 695

Query: 341 RHGKAFTLVAKED 353
           + G A + +  E+
Sbjct: 696 KKGVATSFLTLEN 708


>gi|88861236|ref|ZP_01135868.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2]
 gi|88816717|gb|EAR26540.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2]
          Length = 422

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 137/380 (36%), Positives = 225/380 (59%), Gaps = 8/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FAD  ++P+V+  +   G+   TPIQ + +P  +++ D+ G AQTGTGKT +F+      
Sbjct: 11  FADFNIAPEVIAGLNAHGFEFCTPIQAQCLPYAIEKRDIAGQAQTGTGKTLAFLTATCHH 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  + + + PR LI+ PTRELA Q+  + +    + NL + L+ GG  +E Q  +LE+
Sbjct: 71  LLQSSKGQGKHPRALIMAPTRELAVQIHKDAKILAPHCNLNLGLVYGGEEYEKQLAQLEK 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ-- 179
           G D+LI T GR++D + +G   +N IE++V+DEADRM D+GFI  I+ +   +P   Q  
Sbjct: 131 GVDILIGTTGRLIDLYKQGAYSLNEIEVVVLDEADRMFDLGFIKDIRYLFRRMPDATQRL 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQL 238
            LLFSAT++  +Q+++   + NP  ++V     T + I E  F   +     K  LL  +
Sbjct: 191 NLLFSATLSYRVQELAFEHMTNPIHVQVEPSQKTGKRIVEELF---HPAQVDKIPLLLTI 247

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ ++  +  I+F N K     +   L+     V  + G+++Q+ R+ IL  F  G +  
Sbjct: 248 IE-EEWPEKAIVFSNTKHMCETVYAWLKAADHRVGLLTGDVNQKKRISILEQFTAGNLDF 306

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGL IP+V HVFNFD+P+  E+Y+HRIGRTGRAG  GKA +   ++   ++ 
Sbjct: 307 LVATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTGRAGASGKAISFACEQYAYNLQ 366

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            IE+ +E  +   + D ++L
Sbjct: 367 PIEEYVEHVIPLSHYDKTAL 386


>gi|261210411|ref|ZP_05924705.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC341]
 gi|260840469|gb|EEX67035.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC341]
          Length = 436

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 150/417 (35%), Positives = 231/417 (55%), Gaps = 12/417 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FAD GL P+V+  +   G+V  TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            + T   +GR   + PR +I+ PTRELA Q+ ++ E    +  L  AL  GG  ++ Q  
Sbjct: 71  LLTTPAAEGRTDTQ-PRAIIMAPTRELAIQIYNDAEPLLASTGLKAALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G D+LI T GRI+D + +    +N I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLQSGVDILIGTTGRIIDFYKQRVFSLNYIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R  +LFSAT++  +Q+++   + NP+ + V     T   I+      Y     K ALL
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELF--YPSNEHKMALL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     L   L      V  + G++ Q+ R +IL  F +G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEQLWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   
Sbjct: 307 VDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAI 366

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEK-IDIAQHNHARKNNPIPQKSTGFDRRKK 411
           ++ AIE  IE  +   + D S+L   L   + +      R+ N    ++ G +R+ +
Sbjct: 367 NLPAIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNNGGNRKPQ 423


>gi|70728927|ref|YP_258676.1| ATP-dependent RNA helicase SrmB [Pseudomonas fluorescens Pf-5]
 gi|68343226|gb|AAY90832.1| ATP-dependent RNA helicase SrmB [Pseudomonas fluorescens Pf-5]
          Length = 473

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 217/370 (58%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 29  FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 88

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G A++R+  +TLIL PTRELA Q     E++ +   +   L+ GG  F+ Q   L +
Sbjct: 89  L-IGPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+LI TPGR+L+  N G L +  +E+LV+DEADRMLDMGF   +Q +    P  +QT+
Sbjct: 148 VPDILIGTPGRMLEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTM 207

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLL 239
           LFSAT     L+++    L NP+ +++N+ S   ET  +    A + Q+ ++       L
Sbjct: 208 LFSATTGGSGLREMVAKVLNNPEHLQLNSVSQLNETTRQQIITADHNQHKEQIV---NWL 264

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +T +  I+F N +     +   L  Q +    +HG  DQ+ R   +   K+G ++++
Sbjct: 265 LANETYQKAIVFTNTRAMADRIYGRLVAQDYKAFVLHGEKDQKDRKLAIDRLKQGGVKIL 324

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + +
Sbjct: 325 VATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSS 384

Query: 360 IEKLIEKKVD 369
           IE+ +++  +
Sbjct: 385 IERYLKQSFE 394


>gi|242033243|ref|XP_002464016.1| hypothetical protein SORBIDRAFT_01g010590 [Sorghum bicolor]
 gi|241917870|gb|EER91014.1| hypothetical protein SORBIDRAFT_01g010590 [Sorghum bicolor]
          Length = 750

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 134/373 (35%), Positives = 208/373 (55%), Gaps = 25/373 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +++  L  +++ A+  AGY KP+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPML+ 
Sbjct: 331 WSESKLGTELLRAIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSY 390

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + +            P  +++ PTRELA Q+ +   K+     + V  ++GG   E Q  
Sbjct: 391 ITRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQGF 450

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           K+ +G +++I TPGR+LD   R   ++N    +V+DEADRM+DMGF P +  +   +P +
Sbjct: 451 KIRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 510

Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
                            R T +FSATM   +++++  +L+NP  + + T     + I   
Sbjct: 511 NLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQN 570

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
            +    + S+K   LQ++L      K  I+FCN KK        L+K GF V  +HG   
Sbjct: 571 VI--MVKESEKMPRLQKILTDLGD-KTAIVFCNTKKTADMRAKDLDKAGFRVTTLHGGKS 627

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q  R   L  F+     ++VA+D+A RG+DIPDV HV N+++P+  + Y HRIGRTGRAG
Sbjct: 628 QDQREISLDGFRNRRFNVLVATDVAGRGIDIPDVAHVINYEMPSSVDTYTHRIGRTGRAG 687

Query: 341 RHGKAFTLVAKED 353
           + G A + +  E+
Sbjct: 688 KKGVATSFLTLEN 700


>gi|3435312|gb|AAC32396.1| RNA helicase-related protein [Homo sapiens]
          Length = 709

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 136 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 195

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 196 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 251

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 252 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 311

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 312 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 371

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I
Sbjct: 372 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 430

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 431 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 487


>gi|19705271|ref|NP_602766.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713234|gb|AAL94065.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 528

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 216/372 (58%), Gaps = 16/372 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F +LGLS K++  +   GY  PTPIQ  TIP +L+   D+ G AQTGTGKTA+F LP++
Sbjct: 9   EFRELGLSEKILKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E     +   + ++L PTRELA QVA+       +  + V  + GG   + Q K ++
Sbjct: 69  ENFE----NLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR++D   R  L +N+++  ++DEAD ML+MGF+  I+ I +     ++ 
Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
           L FSATM DE+ KV++N ++  + + V +   T +  E  +  V    ++   C ++   
Sbjct: 185 LFFSATMPDEIMKVAKNHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRII--- 241

Query: 239 LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               D  K   GIIFC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I
Sbjct: 242 ----DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKI 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T +  ++ + 
Sbjct: 298 NILVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRR 357

Query: 357 IDAIEKLIEKKV 368
           +  I+K ++K++
Sbjct: 358 LLQIQKAVKKEI 369


>gi|262278447|ref|ZP_06056232.1| ATP-dependent RNA helicase rhlB [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258798|gb|EEY77531.1| ATP-dependent RNA helicase rhlB [Acinetobacter calcoaceticus
           RUH2202]
          Length = 383

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 141/374 (37%), Positives = 223/374 (59%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++  A+   G+ + TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 5   FETLNLHPQLKKAIDALGFKQMTPIQQKVLKYTLGGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     ++ R R   PR LIL PTRELA Q+  + +   K  +L V  L+GG+ F+ Q K
Sbjct: 65  LLHNPIQEQRFRGE-PRALILAPTRELALQIESDAKLLTKFSDLHVVTLLGGVDFDKQKK 123

Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +L+    D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P 
Sbjct: 124 QLDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPR 183

Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTL+FSAT + ++  ++  +L  P  +E+     T   +E        Q   K  L
Sbjct: 184 KEERQTLMFSATFSYDVLNLARQWLFEPITVEIEPEQKTNNDVEQRVYVVAKQ--DKYRL 241

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ +L+ ++ +   +IF N++  V  L   L++ G+ V  + G I Q  R+K+L  FK+G
Sbjct: 242 LQDILR-EEPIDKVMIFANRRDQVRRLYDHLKRDGYRVGMLSGEIAQDKRLKMLDQFKQG 300

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +M+A+D+A RG+ +  V HV N+ +P ++++Y+HRIGRTGRAG  G + + ++++D 
Sbjct: 301 KNNIMIATDVAGRGIHVDGVSHVVNYTLPEQSDDYVHRIGRTGRAGSQGVSISFLSEDDA 360

Query: 355 KHIDAIEKLIEKKV 368
            ++  IEK I KK+
Sbjct: 361 FYLPEIEKAIGKKL 374


>gi|205352662|ref|YP_002226463.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205272443|emb|CAR37330.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326627728|gb|EGE34071.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 457

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 216/364 (59%), Gaps = 8/364 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L  ++     +   + L+L 
Sbjct: 22  GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF AQ   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQTLLFSAT  + +  +S   
Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            Q P RIE++T  +    IE  F  T A   +K +LLQ LL SQ    + ++FCN KK+ 
Sbjct: 199 QQQPIRIEIDTVDALL-AIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L   G S  A+HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  + 
Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELLV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           N+++    E ++HRIGRT RAG  G A +  A E+ +  + + ++++ K++WLN      
Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQP 374

Query: 379 NPPL 382
           + PL
Sbjct: 375 SLPL 378


>gi|307246946|ref|ZP_07529011.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306852231|gb|EFM84471.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 449

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 214/368 (58%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P+++ A+   GY +PT +Q +TIP  L   D+ G A TGTGKTA+F+LP +
Sbjct: 8   MTFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAI 67

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QVA+  + + +   L++A + GG+ ++   +  
Sbjct: 68  QHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEVF 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR++ +          +EIL+ DEADRML MGF    + I +   + + 
Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187

Query: 180 TLLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           T LFSAT+  EL    ++  L NP +I+        + I+  +         K  LL +L
Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHA-DNLEHKTKLLARL 246

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + + + M+  I+F  ++++V  L  +L K+G     + G++ Q  R + ++  KEG + +
Sbjct: 247 ISTME-MEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKEGVVNV 305

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI DV +V NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D K + 
Sbjct: 306 LVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLG 365

Query: 359 AIEKLIEK 366
            I++  E+
Sbjct: 366 KIKRYTEE 373


>gi|160914649|ref|ZP_02076863.1| hypothetical protein EUBDOL_00656 [Eubacterium dolichum DSM 3991]
 gi|158433189|gb|EDP11478.1| hypothetical protein EUBDOL_00656 [Eubacterium dolichum DSM 3991]
          Length = 472

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 144/383 (37%), Positives = 214/383 (55%), Gaps = 13/383 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F D GL   ++ A+   GY KP  +Q   IP +L + DV   A+TG+GKTASF +P+L
Sbjct: 1   MEFKDFGLEQGIMEALDILGYHKPFAVQEAVIPHLLAKQDVIVQAKTGSGKTASFAIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L       ++P++LIL PTRELA Q+   F++ G    +    + G  PF  Q + L+
Sbjct: 61  QQLIWNE---KLPQSLILAPTRELAMQIQTEFDQIGAKKRIKSLAIYGKFPFRFQKQDLQ 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V+  TPGRILDH        ++I  +VIDEAD MLDMGF+  ++ +   +P  R T
Sbjct: 118 QRTHVICATPGRILDHLREHTFDASSIRYVVIDEADIMLDMGFLDEVEAVLDYLPKKRTT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+ +++  FL +P  I +       + IEH +V    Q  K+ ALL   L 
Sbjct: 178 ALFSATMPKEIIQLANRFLHDPLSIAMEAKQDVHQNIEH-YVYKLNQQDKETALLH--LL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++T+++ I+F   ++ V N+   L+     V  +HG + Q  R+  L  F+ G  +++V
Sbjct: 235 GKETVESAILFVRTQERVENIYQVLKAHHIRVTKLHGGLLQEERLANLKAFRSGEKRILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARG+DI D+ HV N D P++ E YIHR+GRT R    GKA + V   D       
Sbjct: 295 ASDVAARGIDIADISHVINVDFPDKKETYIHRLGRTARKDTSGKAISFVTARD------Q 348

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           EKL++ + D+L   LS  +   E
Sbjct: 349 EKLMQLE-DYLGYSLSMRDASTE 370


>gi|11499835|ref|NP_071079.1| DEAD-box ATP dependent DNA helicase [Archaeoglobus fulgidus DSM
           4304]
 gi|2648271|gb|AAB89003.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Archaeoglobus
           fulgidus DSM 4304]
          Length = 368

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 138/365 (37%), Positives = 214/365 (58%), Gaps = 13/365 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59
           ++F DLG+S   + AV   G+ KPT IQ + IP   +   D+ G AQTG+GKTA+F LP+
Sbjct: 7   VEFEDLGISENGLNAVRRKGFEKPTEIQREIIPRFFEGEKDMVGQAQTGSGKTAAFALPI 66

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L ++++   R +  + +++ PTRELA QV D  E       + V  + GG P   Q ++L
Sbjct: 67  LDLVDE---RSKDVQAIVITPTRELALQVKDEIESLRGGKKVHVLAVYGGQPIFPQIERL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  +++ TPGR++DH  R  L +  +   V+DEADRMLDMGFI  I+ I       R+
Sbjct: 124 RKGVQIVVGTPGRVIDHLERRTLSLEKVRFFVLDEADRMLDMGFIDDIERILRHAGAERR 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CF-VATYAQYSKKCALLQQ 237
            L+FSATM  E+ +++  ++++ + + V++   T E +EH C  V    ++   C +L +
Sbjct: 184 VLMFSATMPPEVLRLARRYMRDYEVVRVHS-KITPENVEHRCLKVNPEKRFEHLCRILDE 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                     GI+FC  KK    L   L  +G+   A++G+I Q  R  IL NF++G  +
Sbjct: 243 ------NNFYGIVFCQTKKETRELGRRLRARGYKADALNGDIPQHKRESILRNFRKGYTR 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ D+ HV N+ +P   E YIHR GRTGR G+ GKA T VA  + + +
Sbjct: 297 VLVATDVAARGIDVKDLTHVVNYSIPQDPEAYIHRTGRTGREGKRGKAITFVAPWESRKL 356

Query: 358 DAIEK 362
             IE+
Sbjct: 357 KIIER 361


>gi|154284444|ref|XP_001543017.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
 gi|160358658|sp|A6QRQ7|RRP3_AJECN RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|150406658|gb|EDN02199.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
          Length = 485

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 142/372 (38%), Positives = 221/372 (59%), Gaps = 14/372 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+   +  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 61  FKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL-- 118

Query: 63  LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +A +  P++L   IL PTRELA Q+++ FE  G   ++  A+++GG+   +Q   L
Sbjct: 119 ----QALMNKPQSLFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISL 174

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +++ TPGR+LDH    K   + +++ LV+DEADR+LD+ F P +  I  ++P  R
Sbjct: 175 GKKPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPRER 234

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +T LFSATM+ +++ +    L NP R+ +++    T  T+   ++    +Y  K   L  
Sbjct: 235 RTYLFSATMSSKVESLQRASLSNPLRVSISSNKYQTVATLLQSYLFIPHKY--KDIYLVY 292

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL ++   ++ I+F         L   L   GF    +HG + Q SR+  LS F+  +  
Sbjct: 293 LL-NEYAGQSAIVFTRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALSKFRSRSRD 351

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIP V  V NFD+P+ ++ YIHR+GRT RAG+ G AF++V + DI+  
Sbjct: 352 ILVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVW 411

Query: 358 DAIEKLIEKKVD 369
             IE  + KK+D
Sbjct: 412 LRIENALGKKLD 423


>gi|15930131|gb|AAH15505.1| DDX42 protein [Homo sapiens]
 gi|23336904|tpg|DAA00077.1| TPA_exp: SF3b125 DEAD-box protein [Homo sapiens]
 gi|158259277|dbj|BAF85597.1| unnamed protein product [Homo sapiens]
          Length = 819

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 136 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 195

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 196 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 251

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 252 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 311

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 312 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 371

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I
Sbjct: 372 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 430

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 431 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 487


>gi|83748492|ref|ZP_00945513.1| Hypothetical Protein RRSL_01624 [Ralstonia solanacearum UW551]
 gi|83724796|gb|EAP71953.1| Hypothetical Protein RRSL_01624 [Ralstonia solanacearum UW551]
          Length = 499

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 149/392 (38%), Positives = 222/392 (56%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P V+  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 44  FSTLALAPAVLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFALALLAQ 103

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    ++L PTRELA QVA    +  +   N+ V  L GG P   Q   LE 
Sbjct: 104 LDARRFDVQ---AMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEH 160

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH  RG L +  ++ LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 161 GAHVVVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPPERQTL 220

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S   L+NPK +++      ++  +  +  T  +      LL +  + 
Sbjct: 221 LFSATYPDGIAKLSRQILRNPKEVKLEERHDDSKIRQRFYEVTDDKRLHAVGLLLKHYRP 280

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+     FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 281 VSTLA----FCNTKQQCRDLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  +  IE
Sbjct: 337 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGNIE 396

Query: 362 KLIEKKVDWLN------GDLSSLNPPLEKIDI 387
           +++ ++V+W        G+ + L PP+E + I
Sbjct: 397 EVLGREVEWHRLDEIDAGNDAPLLPPMETLQI 428


>gi|161503259|ref|YP_001570371.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864606|gb|ABX21229.1| hypothetical protein SARI_01328 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 457

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 138/355 (38%), Positives = 213/355 (60%), Gaps = 8/355 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY++ TP+Q  ++P++L  +DV   A+TG+GKTA+F L +L  ++     +   + L+L 
Sbjct: 22  GYLEMTPVQAASLPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VSLFQTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF  Q   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGVQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQTLLFSAT  + +  +S   
Sbjct: 139 KRTVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPETIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            Q P  I+++T  +    IE  F  T AQ  +K +LLQ LL SQ    + ++FCN KK+ 
Sbjct: 199 QQQPMHIDIDTVDAL-PAIEQQFFETSAQ--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L   G S  A+HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QAVCDALNAAGQSALALHGDLEQRDRDQTLVRFTNGSARILVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
           N+++    E ++HRIGRT RAG  G A +  A E+ +  + + ++++ K++WLN 
Sbjct: 315 NYELAWDPEAHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369


>gi|296108765|ref|YP_003615714.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus infernus
           ME]
 gi|295433579|gb|ADG12750.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus infernus
           ME]
          Length = 357

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 222/369 (60%), Gaps = 13/369 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           MDF  LGLS   + A+   G+ KPT IQ K IP++L    ++ G AQTGTGKTA+F LP 
Sbjct: 1   MDFKSLGLSDNTLKALKRKGFKKPTKIQEKIIPILLSEDVNIVGQAQTGTGKTAAFGLP- 59

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I+EK      + + LIL PTRELA QVA+  +      NL +  + GG P + Q  KL
Sbjct: 60  --IIEKINDEKEI-KALILTPTRELAKQVAEELKSLKGKKNLKIVEIYGGKPIKEQIYKL 116

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA++++ TPGR+LDH  R  + + N+   V+DEAD ML+MGFI  ++ I       + 
Sbjct: 117 -RGANIVVGTPGRLLDHIKRKTINLKNLSYFVLDEADEMLNMGFIEDVEEILKHTNDDKN 175

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT+  E+  +++ ++++ K I+V +  +  E  +H  V+     S+K  LL +++
Sbjct: 176 ILLFSATLPREILNLAKKYMRDYKLIKVKSSKNLIEQ-KHFKVSN----SEKFNLLCKII 230

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++    G+IFC  +++V NL   L ++G+S  A HG + Q  R KIL  FK   I ++
Sbjct: 231 NEENFY--GLIFCKTREDVKNLARKLIEKGYSAEAFHGKLSQFRREKILKRFKMKKINIL 288

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++D+AARG+DI  + HV N+ +P   E Y+HRIGRTGRAG+ GKA T V   + K    
Sbjct: 289 VSTDVAARGIDIEGLTHVINYSLPQNPEYYVHRIGRTGRAGKRGKAITFVEPHEYKKYAH 348

Query: 360 IEKLIEKKV 368
           +++ + KK+
Sbjct: 349 MKRCLCKKL 357


>gi|207344698|gb|EDZ71756.1| YHR065Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 496

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 148/376 (39%), Positives = 217/376 (57%), Gaps = 28/376 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L P+++ A  +  Y KPTPIQ K IP  L+ HD+ G+AQTG+GKTA+F +P+L  
Sbjct: 125 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 184

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +         IL PTRELA Q+ + F+  G    +    ++GG+    Q + L R 
Sbjct: 185 LWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRK 241

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQT 180
             ++I TPGR++DH    K   +  ++ LV+DEADR+LDM F P +  I  ++P   R T
Sbjct: 242 PHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTT 301

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-------TYAQYSKKCA 233
            LFSATMT ++ K+    L NP +  V+    T +T+    +        TY  Y     
Sbjct: 302 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIY----- 356

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           LL + +      K  IIF   K N   +  LC+ LE   FS  A+HG+++Q  RM  L  
Sbjct: 357 LLNEFIG-----KTMIIFTRTKANAERLSGLCNLLE---FSATALHGDLNQNQRMGALDL 408

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV+
Sbjct: 409 FKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 468

Query: 351 KEDIKHIDAIEKLIEK 366
           + D++ I  IE+++ K
Sbjct: 469 QYDLELILRIEEVLGK 484


>gi|28211793|ref|NP_782737.1| ATP-dependent RNA helicase [Clostridium tetani E88]
 gi|28204235|gb|AAO36674.1| ATP-dependent RNA helicase [Clostridium tetani E88]
          Length = 370

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 140/370 (37%), Positives = 219/370 (59%), Gaps = 6/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGLS  ++  +   G   PTPIQ ++I L+ + +DV   AQTGTGKT +F+LPM  
Sbjct: 3   NFKELGLSNDLIQNLKTQGINSPTPIQRESILLIKEGNDVIAEAQTGTGKTLAFLLPMF- 61

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             E     +   + LI+ PTRELA Q+ +   K  ++ +L +    GG    +Q  KL+ 
Sbjct: 62  --ENMSPNINTIQGLIVTPTRELAIQITEEAMKLNESKDLNILSAYGGKDIGSQLNKLKG 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH +R  + + N++ LV+DEAD+ML MGF   ++ I       RQTL
Sbjct: 120 NIHLVIATPGRLLDHLDRNTIDLKNLKTLVLDEADQMLLMGFKNEVETIIKHTSKNRQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   ++K++  ++ +PK I +     T + I+   + T    +K   L + L ++
Sbjct: 180 CFSATMNSSVKKLAYKYMDDPKLITIQKEEITLKNIKQVLIET-TDRNKLDDLCKVLNET 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              M   IIFC  K+ V  L   L ++G++   +HG++ Q  R K++ +FK   IQ ++A
Sbjct: 239 NPFM--AIIFCRTKRRVDKLEMDLYQRGYNCKKLHGDLTQSKREKVMKDFKNTKIQYLIA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V H++N+D+P   ENYIHRIGRTGRAG  G A+  +  +D + ++ IE
Sbjct: 297 TDVAARGLDITGVTHIYNYDIPENTENYIHRIGRTGRAGEKGYAYLFIDLKDKETLNIIE 356

Query: 362 KLIEKKVDWL 371
           K I+ K++ +
Sbjct: 357 KGIKTKIERI 366


>gi|88706512|ref|ZP_01104216.1| ATP-dependent RNA helicase DbpA [Congregibacter litoralis KT71]
 gi|88699224|gb|EAQ96339.1| ATP-dependent RNA helicase DbpA [Congregibacter litoralis KT71]
          Length = 462

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 144/366 (39%), Positives = 210/366 (57%), Gaps = 12/366 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA L LSP  + A+   GY   TP+Q ++IPL+LQ  DV   A+TG+GKTA+F + +L 
Sbjct: 5   DFAALPLSPAQLEALAALGYEHMTPVQAQSIPLLLQGKDVIARARTGSGKTAAFGIGLLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            +     R    + L+L PTRELA QV+    +      N+ +  L GG PF  Q   LE
Sbjct: 65  TINP---RFFGVQALVLCPTRELAEQVSGELRRLASRMANIKLVTLCGGKPFGPQVGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRI DH  R  L ++ +++LV+DEADRMLDMGF   ++ I +  P +RQT
Sbjct: 122 HGAHIVVGTPGRIQDHLGRDTLKLDGLKVLVLDEADRMLDMGFADSMEAIVAKTPRSRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTP-SSTAETIEHCF--VATYAQYSKKCALLQQ 237
           LLFSAT  + ++K+S +  + P  + V+   +   E IE  F  V  + +++   AL + 
Sbjct: 182 LLFSATYPENIRKMSASIQRQPSMVTVDEEVAHKEEVIEQLFYEVQKHERHTTLLALFEH 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                 T  N ++FCN KK    +   L        AIHG++DQR R ++L  F   +  
Sbjct: 242 Y-----TPANAVVFCNTKKQCDEVASVLRDYDIEARAIHGDLDQRERDQVLVQFANNSCP 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  +  V N+++P   E Y+HRIGRTGRAG  G A ++V   +   I
Sbjct: 297 VLVATDVAARGLDIKSLAMVINYELPRDPEVYVHRIGRTGRAGETGLAMSIVIPSETHRI 356

Query: 358 DAIEKL 363
             IE+ 
Sbjct: 357 SKIEEF 362


>gi|110760457|ref|XP_391829.3| PREDICTED: putative ATP-dependent RNA helicase Pl10 [Apis
           mellifera]
          Length = 701

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 153/393 (38%), Positives = 220/393 (55%), Gaps = 25/393 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F ++ L+  +  ++  AGY KPTP+Q   IP+++ R DV   AQTG+GKTA+F++P+L  
Sbjct: 225 FDEVKLTEIIKNSISLAGYDKPTPVQKYAIPIIIGRRDVMACAQTGSGKTAAFLVPILNQ 284

Query: 62  ILEKG---------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
           I E G           R   P  L+L PTRELA Q+ D   K+     +  A++ GG   
Sbjct: 285 IYESGPRPPPINSSGKRKHFPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGGSNI 344

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT- 171
             Q ++L+RG  +L+ TPGR++D   RGK+ ++N   LV+DEADRMLDMGF P I+ I  
Sbjct: 345 VDQMRELDRGCHLLVATPGRLVDMLGRGKIGLHNCRYLVLDEADRMLDMGFEPQIRRIVQ 404

Query: 172 -SLVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
              +P T  RQTL+FSAT   E+Q ++ +FL N   + V    ST+E I    V  + + 
Sbjct: 405 EDTMPPTGERQTLMFSATFPKEIQMLARDFLSNYIFLAVGRVGSTSENITQKIV--WVEE 462

Query: 229 SKKCALLQQLLQSQDTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
             K + L  LLQ+ +          ++F   KK    L   L + G+ V +IHG+  QR 
Sbjct: 463 HDKRSYLLDLLQASNFSDPSAESLTLVFVETKKGADMLEEYLHQMGYPVTSIHGDRTQRE 522

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L  F+ G   ++VA+ +AARGLDIP V HV NFD+P   E Y+HRIGRTGR G  G
Sbjct: 523 REDALRRFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGNLG 582

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WLN 372
            A +    ++I  + D +  L+E   +   WL+
Sbjct: 583 LATSFFNNKNINLVRDLVSLLVEANQELPPWLD 615


>gi|326571018|gb|EGE21042.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis BC7]
          Length = 391

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 150/381 (39%), Positives = 232/381 (60%), Gaps = 25/381 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DL LS  ++ AV    + + TPIQ + +P  L   D  G AQTGTGKTA+F   ++T
Sbjct: 8   NFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATF---LIT 64

Query: 62  ILEKGRAR------VRM---PRTLILEPTRELAAQV-ADNFE--KYGKNYNLTVALLIGG 109
           I+E    R      +R    PR L+L PTRELA Q+ AD  E  ++ + YNL +    GG
Sbjct: 65  IIESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCHELTRFSQLYNLCIT---GG 121

Query: 110 IPFEAQNKKL-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
             F+ Q ++L +R  D+LI TPGRI+D  N+G+L ++ +E+ V+DEADRMLDMGFIP I+
Sbjct: 122 SDFDKQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIK 181

Query: 169 NITSLVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
            I   +P    RQ+LLFSAT   ++  ++  +L  P  +E+   S T + I+  F     
Sbjct: 182 RIVRHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTE 241

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           +  +K + L+Q+L + D++K  IIF N+K  V  L   L +    V  + G++ Q+ R +
Sbjct: 242 R--EKTSALKQIL-ADDSVKKTIIFANRKDQVKRLYDYLRRH-HKVTMLSGDVAQQKRER 297

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  FK+G + ++VA+D+A RG+ + DV HV N+ +P+  ++Y+HRIGRTGRAG  G + 
Sbjct: 298 YLQRFKDGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSI 357

Query: 347 TLVAKEDIKHIDAIEKLIEKK 367
           + V++ D  ++ A+E+ I++K
Sbjct: 358 SFVSENDAFNLPALERHIDQK 378


>gi|325297782|ref|YP_004257699.1| DEAD/DEAH box helicase domain-containing protein [Bacteroides
           salanitronis DSM 18170]
 gi|324317335|gb|ADY35226.1| DEAD/DEAH box helicase domain protein [Bacteroides salanitronis DSM
           18170]
          Length = 418

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 221/371 (59%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   V+ A+    + + TP+Q +TIP++L+  D+ G+AQTGTGKTA+++LP++
Sbjct: 1   MKFTELNLEESVLDALDAMNFKECTPVQEQTIPVILEGRDLIGVAQTGTGKTAAYLLPVI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             L KG         +I+ PTRELA Q+    E +     ++   + GG   I FE + K
Sbjct: 61  NQLSKGGYPADAINCVIMAPTRELAQQIDQQMEGFSYFMPVSSVAIYGGNDGIRFEQEKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++++ L +P  +++       + I+  ++   AQ   K  +++ 
Sbjct: 181 RQTIMFSATMPAKIQQLAQSILHDPAEVKLAVSKPADKIIQAAYICYEAQ---KLGIIES 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L + Q+  +  IIF + K  V  +  +L++   +V  +H +++Q  R +I+  F+ G I 
Sbjct: 238 LFRQQEP-ERVIIFASSKLKVKEVTKALKRLKLNVGEMHSDLEQSQRDEIMHEFRNGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V++ +    
Sbjct: 297 MLVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGCAITFVSENEQTRF 356

Query: 358 DAIEKLIEKKV 368
             IE  + K++
Sbjct: 357 KQIEDFLGKEI 367


>gi|225374820|ref|ZP_03752041.1| hypothetical protein ROSEINA2194_00440 [Roseburia inulinivorans DSM
           16841]
 gi|225213389|gb|EEG95743.1| hypothetical protein ROSEINA2194_00440 [Roseburia inulinivorans DSM
           16841]
          Length = 531

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 220/368 (59%), Gaps = 8/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L P+V+ A+ + G+ + TPIQ + IP+V+   DV G AQTGTGKTASF +P+L  
Sbjct: 6   FDELDLYPQVLRAIKEMGFEEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGIPVLHK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           ++    + ++   +IL PTRELA QV++   K  K  + + +  + GG     Q K L+ 
Sbjct: 66  VDPNNKKTQV---IILSPTRELAIQVSEEIRKLSKYMHGVKILPVYGGQDINRQIKALKG 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180
           GA ++I TPGR++DH  R  +    +  +V+DEAD ML+MGF   I+ I   +P   RQT
Sbjct: 123 GAQIIIGTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEYIPEEGRQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +  +++ +  +   I+V     T  +IE  +     +   K  +L +LL 
Sbjct: 183 VLFSATMPKPILDITKKYQHDAVTIKVVKKELTVPSIEQYYYDV--KRKDKTEVLTRLLD 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  K  ++FCN KK V  L   L+ +G+    +HG++ Q  R +++  F+ G +++++
Sbjct: 241 YYNP-KLSLVFCNTKKMVDELSEELKSRGYMAEGLHGDMKQAQRDRVMKAFRSGRVEILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G+AFT V  +++  +  I
Sbjct: 300 ATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDI 359

Query: 361 EKLIEKKV 368
            +  + K+
Sbjct: 360 MRYCKTKI 367


>gi|315445551|ref|YP_004078430.1| DEAD/DEAH box helicase [Mycobacterium sp. Spyr1]
 gi|315263854|gb|ADU00596.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
          Length = 505

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 142/372 (38%), Positives = 215/372 (57%), Gaps = 13/372 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA LG+  ++V A+ + G      IQ  T+PL L   D+ G A+TG GKT +F +P+L  
Sbjct: 12  FAQLGVRDEIVRALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLHR 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK------NYNLTVALLIGGIPFEA 114
              +  R    +PR L++ PTREL  QV ++     K         LTV  + GG P+E 
Sbjct: 72  ITTDTERPLTGIPRALVVVPTRELCIQVYEDLVHASKYLMADDTRKLTVTAIYGGRPYEP 131

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L++G DV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+ I   +
Sbjct: 132 QIEALQKGVDVVVGTPGRLLDLAQQGHLQLGGLNVLVLDEADEMLDLGFLPDIERILKQI 191

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           P  RQ +LFSATM D +  ++  F+  P   R E    S+T +T E    A  A    K 
Sbjct: 192 PAKRQAMLFSATMPDPIITLARTFMTQPTHIRAEGVQGSATHDTTEQ--FAYRAHALDKV 249

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            ++ ++LQ++      +IF   K+    +   L ++GF V A+HG++ Q +R K L  F+
Sbjct: 250 EMVARILQAEGRGAT-MIFTRTKRTAQKVADELGERGFRVGAVHGDLGQSAREKALKGFR 308

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G + ++VA+D+AARG+DI D+ HV NF +P   + Y+HRIGRTGRAG+ G A TLV  +
Sbjct: 309 NGDVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTLVDWD 368

Query: 353 DIKHIDAIEKLI 364
           ++     I+K +
Sbjct: 369 ELPRWSMIDKAL 380


>gi|224824286|ref|ZP_03697394.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224603705|gb|EEG09880.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 417

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 136/360 (37%), Positives = 207/360 (57%), Gaps = 6/360 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILE 64
           +GL P +  A L  GY+ P+ IQ   IP +LQ  DV   AQTG+GKTA+F LP+L   L 
Sbjct: 1   MGLQPSLAQAALSQGYLAPSAIQTSAIPAILQGRDVLATAQTGSGKTAAFCLPLLQQWLT 60

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKKLERG 122
             +   R  + LIL PTRELA QV +   +   +    + VA++ GG+    Q   L  G
Sbjct: 61  SRQGSPRQVQALILLPTRELAVQVGNTLRELALSLPRRVKVAVVYGGVSINPQMMALRGG 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           AD+++ TPGR+LD      L ++ +  LV+DEADR+LD+GF   +  + +L+P  RQ LL
Sbjct: 121 ADIVVATPGRLLDLIGYNALSISTVGTLVLDEADRLLDLGFADELGRLLALLPPYRQNLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    +  ++E  L  P RI++   ++TA  I    +   A  S++  LL+ LLQ+ 
Sbjct: 181 FSATFPPAVHSLAEQLLSQPLRIDIAQTAATAPDIHQRAIEVDA--SQRTMLLRHLLQTH 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   ++    +   L++ G    A+HG+  Q  R ++L++ K G +Q++VA+
Sbjct: 239 G-WDRVLVFVASRQAADRVTGKLQRAGIRAAALHGDCSQGQRGQVLADLKSGQLQVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP +  V N+D+P    +Y HRIGRTGRAG  G+A + ++ +   H   IEK
Sbjct: 298 DVAARGIDIPLLPVVVNYDLPRSPVDYTHRIGRTGRAGARGEAISFISADCAAHFQLIEK 357


>gi|71281498|ref|YP_266942.1| ATP-dependent RNA helicase RhlB [Colwellia psychrerythraea 34H]
 gi|71147238|gb|AAZ27711.1| ATP-dependent RNA helicase RhlB [Colwellia psychrerythraea 34H]
          Length = 428

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 141/366 (38%), Positives = 220/366 (60%), Gaps = 8/366 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADL L+P+VV  +   G+   T IQ K++P++LQ  D+ G AQTG GKT +F+      
Sbjct: 11  FADLNLAPQVVTGLEAMGFDYCTSIQAKSLPVLLQGTDLAGQAQTGEGKTIAFLAATFHH 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+K       PR LI+ PTRELA Q+  +  +  K+  L + ++ GG  +E+Q  +LE 
Sbjct: 71  LLQKEAPTHNQPRALIMAPTRELAIQIHRDATEMAKSTGLRLGVVYGGEGYESQRLELEA 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTRQ 179
           G D+LI T GR++D+  +G   + NIE++V+DEADRM D+GFI  I+ +   +P    R 
Sbjct: 131 GVDILIGTCGRLIDYMKQGIYNLKNIEVIVLDEADRMFDLGFIKDIRYMFDKMPPATERL 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQL 238
           ++LFSAT++  +++++ + + +P  +EV     T   I E  F   Y     K  LLQ L
Sbjct: 191 SMLFSATLSFRVKELAFDHMNDPTSVEVEPEQKTNSRISEELF---YPSNEDKMTLLQTL 247

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ +D  +  I+F N K     +   L      V  + G++ Q+ R+KIL  F +GT+ +
Sbjct: 248 IE-EDWPEKAIVFANTKHVCEKVFDHLNADKIRVGLLTGDVPQKKRLKILEEFTDGTVDI 306

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGL IP V HVFN+D+P+  ++Y+HRIGRTGRAG  G A +L  ++ + ++ 
Sbjct: 307 LVATDVAARGLHIPSVTHVFNYDLPDDCQDYVHRIGRTGRAGETGHAISLACEQYVFNLP 366

Query: 359 AIEKLI 364
            IE  I
Sbjct: 367 EIETYI 372


>gi|145225254|ref|YP_001135932.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           gilvum PYR-GCK]
 gi|145217740|gb|ABP47144.1| DEAD/DEAH box helicase domain protein [Mycobacterium gilvum
           PYR-GCK]
          Length = 505

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 142/372 (38%), Positives = 215/372 (57%), Gaps = 13/372 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA LG+  ++V A+ + G      IQ  T+PL L   D+ G A+TG GKT +F +P+L  
Sbjct: 12  FAQLGVRDEIVRALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLHR 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK------NYNLTVALLIGGIPFEA 114
              +  R    +PR L++ PTREL  QV ++     K         LTV  + GG P+E 
Sbjct: 72  ITTDTERPLTGIPRALVVVPTRELCIQVYEDLVHASKYLMADDTRKLTVTAIYGGRPYEP 131

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L++G DV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+ I   +
Sbjct: 132 QIEALQKGVDVVVGTPGRLLDLAQQGHLQLGGLNVLVLDEADEMLDLGFLPDIERILKQI 191

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           P  RQ +LFSATM D +  ++  F+  P   R E    S+T +T E    A  A    K 
Sbjct: 192 PAKRQAMLFSATMPDPIITLARTFMTQPTHIRAEGVQGSATHDTTEQ--FAYRAHALDKV 249

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            ++ ++LQ++      +IF   K+    +   L ++GF V A+HG++ Q +R K L  F+
Sbjct: 250 EMVARILQAEGRGAT-MIFTRTKRTAQKVADELGERGFRVGAVHGDLGQSAREKALKGFR 308

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G + ++VA+D+AARG+DI D+ HV NF +P   + Y+HRIGRTGRAG+ G A TLV  +
Sbjct: 309 NGDVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTLVDWD 368

Query: 353 DIKHIDAIEKLI 364
           ++     I+K +
Sbjct: 369 ELPRWSMIDKAL 380


>gi|317046374|ref|YP_004114022.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp.
           At-9b]
 gi|316947991|gb|ADU67466.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
          Length = 431

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 150/391 (38%), Positives = 226/391 (57%), Gaps = 17/391 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTMAFLTSTFHH 70

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L      +GR +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 71  LLTHPAAEGR-QVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE+G D+L+ T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLEQGVDILVGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWVFRRIPPA 189

Query: 178 RQ--TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234
            Q  ++LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  L
Sbjct: 190 TQRLSMLFSATLSYRVRELAFEHMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRL 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ LL+ ++     I+F N K    ++   L   G  V  + G++ Q+ R++IL +F +G
Sbjct: 247 LQTLLE-EEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E  
Sbjct: 306 DVDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGASGHSISLACEEYA 365

Query: 355 KHIDAIEKLIEKK--VDWLNGD--LSSLNPP 381
            ++ AIE+ I     V   N +  LS L PP
Sbjct: 366 LNLPAIEEYIGHGIPVSKYNSEALLSDLPPP 396


>gi|312083101|ref|XP_003143720.1| ATP-dependent RNA helicase in chromosome III [Loa loa]
 gi|307761116|gb|EFO20350.1| ATP-dependent RNA helicase in chromosome III [Loa loa]
          Length = 463

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 141/418 (33%), Positives = 241/418 (57%), Gaps = 18/418 (4%)

Query: 1   MDFADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           + F  LG++  V+C   D   + KPT +QI  +P   ++ D+ G+A+TG+GKTA+F +P+
Sbjct: 24  ITFQQLGVT-DVLCEACDRLNWKKPTKVQIAALPHAFKKRDIIGLAETGSGKTAAFAIPI 82

Query: 60  LTILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           L      +A +  P+    L+L PTRELA Q+ + FE  G +  + +A+++GG+    Q+
Sbjct: 83  L------QALLETPQKLFALVLTPTRELAFQIGEQFEALGASIGILIAVIVGGVDTVTQS 136

Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             L +   V++ TPGR++DH    K   +  ++ LV+DEADR+L+M F   ++ I  ++P
Sbjct: 137 LALAKRPHVIVATPGRLVDHLENTKGFNLRALKYLVMDEADRILNMDFEVEVEKILKVIP 196

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R+T L+SATMT ++ K+    L +P RIEV++   T + ++  ++  +  Y  K A L
Sbjct: 197 KERRTYLYSATMTKKVAKLERASLNDPVRIEVSSKYQTVDKLKQYYI--FIPYKYKEAYL 254

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +L ++   +  I+FC+   + +     L K GF    +HG + Q  R+  L+ FK  T
Sbjct: 255 VYIL-NEMAGQTAIVFCSTCVSALRTALMLRKLGFGAVPLHGQMSQAKRLGSLNKFKSKT 313

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
              ++ +D+A+RGLDIP V  V N+DVP ++++Y+HR+GRT RAGR G A T V + D++
Sbjct: 314 STTLICTDVASRGLDIPHVDLVLNYDVPTQSKDYVHRVGRTARAGRSGVAVTFVTQYDVE 373

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
               IE+LI KK+       + +   +E+++ AQ    R+   + +K     R++K +
Sbjct: 374 IYQRIERLIGKKLPLFETVENDVMLLMERVEEAQKLAKREMKEMEEKK---GRKRKQF 428


>gi|261345270|ref|ZP_05972914.1| ATP-dependent RNA helicase RhlB [Providencia rustigianii DSM 4541]
 gi|282566969|gb|EFB72504.1| ATP-dependent RNA helicase RhlB [Providencia rustigianii DSM 4541]
          Length = 428

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 144/373 (38%), Positives = 219/373 (58%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKV+ A+   G+   TPIQ  T+P  ++  DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVIEALNKKGFNFCTPIQAATLPFTVEGKDVAGQAQTGTGKTLAFLTSTFHF 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +   PR LI+ PTRELA Q+  + ++  +   L + L  GG  ++ Q K 
Sbjct: 71  LLTHPAMDGKKTNQPRALIMAPTRELAVQIYSDSKELAEYTGLKMGLAYGGDGYDEQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
           L+ G D+L+ T GR++D+  +G + +  I+++V+DEADRM D+GFI  I+ I   +P   
Sbjct: 131 LQNGVDILVGTTGRLIDYAKQGHVDLTAIQVVVLDEADRMYDLGFIKDIRWIFRRMPSAA 190

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
            R  LLFSAT++  +++++   + NP+ IEV     T   I E  F   Y    +K  LL
Sbjct: 191 DRLNLLFSATLSYRVRELAFEQMNNPEYIEVEPLQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q LL+ ++  +  IIF N K    ++   L   G  V  + G++ Q+ R++IL  F +G 
Sbjct: 248 QTLLE-EEWPERCIIFANTKHRCDDIWAHLAADGHRVGLLTGDVAQKKRLRILEQFTQGH 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 IDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGNSISLACEEYSL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE+ I+  +
Sbjct: 367 NLPAIEEYIQHSI 379


>gi|317010528|gb|ADU84275.1| ATP-dependent RNA helicase [Helicobacter pylori SouthAfrica7]
          Length = 494

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 139/369 (37%), Positives = 214/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   V+ +V +AG+  P+PIQ K IP +LQ  DV   AQTGTGKTA+F LP++  
Sbjct: 24  FNGLGLKESVLKSVYEAGFTSPSPIQEKAIPAILQGRDVIAQAQTGTGKTAAFALPIINN 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++ 
Sbjct: 84  LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 139

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 140 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 199

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++++++  L+NP +I +   + T   I   F        ++   + +LL +Q
Sbjct: 200 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERSEAIMRLLDTQ 257

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K+ I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA+
Sbjct: 258 APEKS-IVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 316

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 317 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 376

Query: 363 LIEKKVDWL 371
            I+ +++  
Sbjct: 377 EIDSEIELF 385


>gi|257066575|ref|YP_003152831.1| DEAD/DEAH box helicase domain-containing protein [Anaerococcus
           prevotii DSM 20548]
 gi|256798455|gb|ACV29110.1| DEAD/DEAH box helicase domain protein [Anaerococcus prevotii DSM
           20548]
          Length = 536

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 137/362 (37%), Positives = 219/362 (60%), Gaps = 8/362 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +  +++ A+ D GY KP+PIQ ++IP +L+ +D+ G +QTG+GKTA+F +P++
Sbjct: 1   MKFNELNIGNEILRAIDDLGYEKPSPIQEESIPHLLEGNDLIGKSQTGSGKTAAFAIPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEK-YGKNYNLTVALLIGGIPFEAQNKKL 119
             +E       + + LIL PTREL  QV+   EK Y     + +  + GG     Q K L
Sbjct: 61  ENIEANG----ITQALILCPTRELCIQVSKEIEKLYKYKKEIKILSVYGGSHIVRQIKSL 116

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G ++++ TPGR++D   R  L ++ ++ +V+DEAD M DMGF   ++ I       RQ
Sbjct: 117 KKGVEIVVGTPGRLMDLMRRKVLKLDQLKTVVLDEADEMFDMGFRDDMKFILDRTNPNRQ 176

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T  FSATM  E+Q+ S+ +  NP  +++ +   T + I+  ++    + S K   L +LL
Sbjct: 177 TCFFSATMGPEIQEFSKLYQTNPYEVKIKSKEVTVDRIDQYYIKL--KESMKEEALMRLL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        I+FCN K+ V  L  SL K+ + V  +HG++ Q SR +++  F+  TIQ++
Sbjct: 235 EIHKA-NLAIVFCNTKRKVDRLVESLTKKNYLVDGLHGDLKQSSRDQVMKKFRNKTIQIL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV  VFN+D+P   E Y+HRIGRT RAG+ G +F+L++  D   +  
Sbjct: 294 VATDIAARGLDVDDVDIVFNYDLPQLDEYYVHRIGRTARAGKSGLSFSLISGRDNNRLRQ 353

Query: 360 IE 361
           IE
Sbjct: 354 IE 355


>gi|328869268|gb|EGG17646.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 860

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 139/355 (39%), Positives = 207/355 (58%), Gaps = 2/355 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  +  AV   GY +PTPIQ K IPL+L   D+   A TG+GKTA+F+LP+L  
Sbjct: 236 FEELHLSRPLQKAVAKLGYTQPTPIQAKAIPLILNGKDILASATTGSGKTAAFILPILER 295

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L    A  R+ R LI+ PTRELA Q    FE   +  N+   L++GG+  + Q  +L + 
Sbjct: 296 LLYRDATHRVSRVLIVLPTRELALQCHSVFESLAQFTNVQSCLVVGGLSNKVQEHELRKR 355

Query: 123 ADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR++DH  N   + + +IEILV+DEADR+LDMGF   +  +    P  RQTL
Sbjct: 356 PDVIIATPGRLIDHLLNAHDVGLEDIEILVLDEADRLLDMGFKDELNRVVESCPDGRQTL 415

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSAT++D+++ +++  L  P R+ V+     A T+E  F+     Q + + A+L  L  
Sbjct: 416 LFSATLSDDVKLLAKLSLSQPVRVAVDALFQVASTLEQEFIKIKPGQLADRTAMLLSLCT 475

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   KK V  +   L   G  V  +HG+++Q  R + L +F+ G +  ++
Sbjct: 476 RVFNGGGCIVFFRSKKEVHRIAILLGLSGLKVGELHGDLNQEQRFEALQSFRNGEVDFLL 535

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           A+D+AARGLD+  V  V N+++P     YIHR+GRT RAG  G++ + + + D K
Sbjct: 536 ATDIAARGLDVLGVRTVINYNMPRSLAQYIHRVGRTARAGLAGRSCSFITEADRK 590


>gi|302388261|ref|YP_003824083.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
 gi|302198889|gb|ADL06460.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
           WM1]
          Length = 572

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 219/369 (59%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L  +++ AV D G+ + +PIQ + IP+  +  D+ G AQTGTGKTA+F +P+L  
Sbjct: 19  FDELQLDERILRAVADMGFEEASPIQAQAIPVQAEGRDIIGQAQTGTGKTAAFGIPLL-- 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
            +K   +V+  + + L PTRELA QVAD   +  K  + + V  + GG     Q + L+ 
Sbjct: 77  -QKIDPKVKKLQAVALCPTRELAIQVADEIRRLAKYMHGVKVVPIYGGQDIVKQIRSLKD 135

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR++DH  R  +  +++  +++DEAD ML+MGF+  ++ I S +P  RQT+
Sbjct: 136 GTQIIIGTPGRVMDHMRRKTVKFDHVHTVIMDEADEMLNMGFLEDMETILSQLPEERQTV 195

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           +FSATM   + +++  F Q+P  ++V     T   +   +  V   ++    C LL    
Sbjct: 196 MFSATMPPAIMEIARKFQQDPVTVKVVKKELTVPKVTQYYYEVKPKSKVEVMCRLLDMY- 254

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  + FCN KK V  L  +L+ +G+    +HG++ Q  R +++ +F+ G  +++
Sbjct: 255 ----APKLSVAFCNTKKQVDELVQALQGRGYFAEGLHGDLKQIQRDRVMGSFRNGKTEIL 310

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G AF+ V  +++  +  
Sbjct: 311 VATDVAARGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGREGIAFSFVVGKEVYKLRD 370

Query: 360 IEKLIEKKV 368
           I++  + K+
Sbjct: 371 IQRYCKTKI 379


>gi|56413419|ref|YP_150494.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362342|ref|YP_002141979.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56127676|gb|AAV77182.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197093819|emb|CAR59302.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
          Length = 457

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 140/355 (39%), Positives = 212/355 (59%), Gaps = 8/355 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L  ++     +   + L+L 
Sbjct: 22  GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VSLFQTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF AQ   L+    +++ TPGR LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRQLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQTLLFSAT  + +  +S   
Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            Q P RIE++T  +    IE  F  T A   +K +LLQ LL SQ    + ++FCN KK+ 
Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L   G S  A+HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
           N+++    E ++HRIGRT RAG  G A +  A E+ +  + + ++++ K++WLN 
Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369


>gi|307262511|ref|ZP_07544156.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306867888|gb|EFM99719.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 449

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 213/368 (57%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P+++ A+   GY +PT +Q +TIP  L   D+ G A TGTGKTA+F+LP +
Sbjct: 8   MTFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAI 67

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QVA+  + + +   L++A + GG+ ++   +  
Sbjct: 68  QHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEVF 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR++ +          +EIL+ DEADRML MGF    + I +   + + 
Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187

Query: 180 TLLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           T LFSAT+  EL    ++  L NP +I+        + I+  +         K  LL +L
Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHA-DNVEHKTKLLARL 246

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + + + M+  I+F  ++++V  L  +L K+G     + G++ Q  R + ++  KEG + +
Sbjct: 247 ISTME-MEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKEGVVNV 305

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI DV +V NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D K + 
Sbjct: 306 LVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLG 365

Query: 359 AIEKLIEK 366
            I +  E+
Sbjct: 366 KIRRYTEE 373


>gi|311898243|dbj|BAJ30651.1| putative ATP-dependent RNA helicase [Kitasatospora setae KM-6054]
          Length = 884

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 132/349 (37%), Positives = 204/349 (58%), Gaps = 18/349 (5%)

Query: 31  TIPLVLQRHDVCGIAQTGTGKTASFVLPML------TILEKGRARVRM----PRTLILEP 80
           T+P+ L  HDV G A+TGTGKT  F LP++        +  GRA        P+ LI+ P
Sbjct: 2   TLPVALSGHDVIGQAKTGTGKTLGFGLPLIERVVVQADVAAGRATAEQLSDGPQALIVVP 61

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TREL  QV ++ +  GK  ++ V  + GG  +E Q + L++G D+++ TPGR+LD   + 
Sbjct: 62  TRELCTQVTNDLQTAGKVRDVRVLAVYGGRAYEPQVEALKKGVDIVVGTPGRLLDLAGQR 121

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200
           KL ++ +  LV+DEAD MLD+GF+P ++ I +++P  RQTLLFSATM  ++  ++  ++ 
Sbjct: 122 KLDLSKVRALVLDEADEMLDLGFLPDVEKIITMLPAKRQTLLFSATMPGQVISLARRYMS 181

Query: 201 NPKRIEVNTPSSTAETI----EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
            P  I    P  T  T+    +H F    A    K  ++ ++LQ+ D     +IFC  K+
Sbjct: 182 QPTHIRAAAPDDTGTTVANIEQHIF---RAHSLDKVEMVSRILQA-DGRGLAMIFCRTKR 237

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
              ++   L K+GF+  A+HG++ Q +R + L  F+ G + ++V +D+AARG+D+  V H
Sbjct: 238 TAADVAEQLTKRGFAAGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTH 297

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           V N+   +  + Y+HRIGRTGRAG  G A TLV  +DI     I K +E
Sbjct: 298 VINYQCTDDEKTYLHRIGRTGRAGASGTAVTLVDWDDIPRWQLINKALE 346


>gi|189460629|ref|ZP_03009414.1| hypothetical protein BACCOP_01270 [Bacteroides coprocola DSM 17136]
 gi|189432588|gb|EDV01573.1| hypothetical protein BACCOP_01270 [Bacteroides coprocola DSM 17136]
          Length = 637

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 221/367 (60%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+S ++  A+ + GY  P P+Q + IP +L  R+DV  +AQTGTGKTA+F LP++ 
Sbjct: 4   FEELGVSAEIRQAIEEMGYENPMPVQEEVIPYLLGNRNDVVALAQTGTGKTAAFGLPLIQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++  +   R+P+ L+L PTREL  Q+A +   Y K   +L +  + GG   E+Q + L+
Sbjct: 64  KIDVTK---RIPQALVLCPTRELCLQIAGDLTDYSKYITDLKILPVYGGSSIESQIRSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR++D   R    +  I  +V+DEAD ML+MGF   I  I   VP  R T
Sbjct: 121 QGVHIIVATPGRLIDLMERKVARLETIRDVVMDEADEMLNMGFTDSINAILEQVPEDRNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSATM+ E+ ++++ +L N K I + T +  ++ + H     +A+   K   L++++ 
Sbjct: 181 LMFSATMSPEIARIAKTYLHNAKEITIGTKNEGSKNVHHIAYIVHAK--DKYLALKRVVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L + G++  ++HG + Q  R  ++  F++  +QL+V
Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRYLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVNDLTHVINYALPDDTESYTHRSGRTGRAGKTGISIAIINLREKGKMREI 357

Query: 361 EKLIEKK 367
           E++I KK
Sbjct: 358 ERIINKK 364


>gi|51258614|gb|AAH78667.1| DDX42 protein [Homo sapiens]
          Length = 919

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 236 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 295

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 296 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 351

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 352 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 411

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 412 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 471

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I
Sbjct: 472 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 530

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 531 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 587


>gi|238797547|ref|ZP_04641044.1| DEAD/DEAH box helicase domain protein [Yersinia mollaretii ATCC
           43969]
 gi|238718544|gb|EEQ10363.1| DEAD/DEAH box helicase domain protein [Yersinia mollaretii ATCC
           43969]
          Length = 612

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 125/323 (38%), Positives = 206/323 (63%), Gaps = 6/323 (1%)

Query: 44  IAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LT 102
           +AQTG+GKTA+F LP+L  +   +A ++ P+ L+L PTRELA QVA+    + K+ N + 
Sbjct: 1   MAQTGSGKTAAFGLPLLHNI---KAELKAPQVLVLAPTRELAIQVAEALSSFSKDINGVN 57

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
           V  L GG  ++ Q + L +G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MG
Sbjct: 58  VVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMG 117

Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           FI  ++ I + +P   QT LFSATM + +++++  F+++P+ + + +  +T   I   F 
Sbjct: 118 FIEDVETIMAQIPAEHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSFW 177

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                Y+KK AL+ + L+S+D     IIF   K   + +  +LE+ G+S  A++G+++Q 
Sbjct: 178 RVGGGYNKKEALV-RFLESED-FDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQS 235

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L   K+G + +++A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR 
Sbjct: 236 LREQTLDRLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 295

Query: 343 GKAFTLVAKEDIKHIDAIEKLIE 365
           G+A   V   + + +  IE+ ++
Sbjct: 296 GRALLFVENRERRLLQNIERTMK 318


>gi|300175700|emb|CBK21243.2| unnamed protein product [Blastocystis hominis]
          Length = 485

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 147/395 (37%), Positives = 226/395 (57%), Gaps = 14/395 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR---HDVCGIAQTGTGKTASFVLPM 59
           F+D G+   +  A+ + G+  P+ IQ   + + LQ     D+  IA+TG+GKT +F +P+
Sbjct: 54  FSDYGVCDTLCQAIDNLGWKHPSSIQRDVLKIALQEDQNKDIIAIAETGSGKTGAFAIPI 113

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  L     R+     LI+ PTRELA Q+++ FE  G +  L  A+++GGI    Q   L
Sbjct: 114 IQRLIDNPQRMY---ALIVTPTRELAFQISEQFEALGSSVGLKTAVIVGGIDMVQQALAL 170

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            R   V++ TPGR++DH    K   +N ++ LV+DEADR L M F   I  I S  P  R
Sbjct: 171 ARKPHVVVGTPGRLVDHLENTKGFSLNTMKYLVLDEADRCLSMDFEEAIDKILSCFPKER 230

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            T LFSATMT ++ K+    LQ+P +I+V++   T  T+   ++   A+Y K+C L    
Sbjct: 231 VTYLFSATMTQKVVKLQRASLQDPVKIQVSSKYQTVSTLIQQYLFIPAKY-KECYL--AF 287

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + ++   K+ I+F +   +   L   L   GF    I+GN+ Q  R+  L+ FKEG   +
Sbjct: 288 IMNEFRGKSTILFVSTCSSSQLLTLFLRNLGFKAVCINGNLSQVKRLGALNKFKEGARNI 347

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDIP+V  V N+D+P   ++Y+HR+GRT RAG+ G+A T V + D++   
Sbjct: 348 LIATDVASRGLDIPEVDLVVNYDIPGNGKDYVHRVGRTARAGKSGRAITFVTQYDVESYQ 407

Query: 359 AIEKLIEKKVDWL----NGDLSSLNPPLEKIDIAQ 389
            IEKLIEK++D      N  L+ L    E + IAQ
Sbjct: 408 RIEKLIEKRLDAYPCSENEALTYLQTTTEALQIAQ 442


>gi|307610952|emb|CBX00571.1| hypothetical protein LPW_22891 [Legionella pneumophila 130b]
          Length = 468

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 223/373 (59%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L  +++ ++  + Y   TPIQ++++P++L+  D+   A+TG+GKTA+F L +L
Sbjct: 11  LSFSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDLIAQAKTGSGKTAAFALSLL 70

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L+     V+    L+L PTRELA QV+    +      N+ +  L GGIP + Q   L
Sbjct: 71  NNLKISFFAVQ---ALVLCPTRELAEQVSQAIRRLACFMPNVKIINLSGGIPMQPQLDSL 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA +++ TPGRIL H     L ++ ++ LV+DEADRMLDMGF   I+NI S+ P  RQ
Sbjct: 128 RHGAHIIVGTPGRILKHLKNASLDLSQVKALVLDEADRMLDMGFFDDIKNIISVCPKQRQ 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +E++++S+ F++NPK + V TP    +  +H +  T  + ++K  LL+ LL
Sbjct: 188 TLLFSATYPEEIKQLSKQFMKNPKEVYVETPLDEIDIEQHFYEVT--KQTQKFPLLKSLL 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                + + +IFCN K+  + +   L  +GFS  A++G+++Q  R   +  F   +  ++
Sbjct: 246 LHYQPV-SVLIFCNTKQQTIEVTDQLINEGFSAIALNGDMEQIERDLAVLRFANQSCSIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++  V NFD+    + +IHRIGRTGRAG  G A ++V   D + I A
Sbjct: 305 VATDVAARGLDIKELSAVINFDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPADAQRICA 364

Query: 360 IEKLIEKKVDWLN 372
           IE      + W N
Sbjct: 365 IEDNYPHPIHWGN 377


>gi|190151364|ref|YP_001969889.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307264721|ref|ZP_07546300.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189916495|gb|ACE62747.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|306869917|gb|EFN01682.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 445

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 214/368 (58%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P+++ A+   GY +PT +Q +TIP  L   D+ G A TGTGKTA+F+LP +
Sbjct: 8   MTFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAI 67

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QVA+  + + +   L++A + GG+ ++   +  
Sbjct: 68  QHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEVF 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR++ +          +EIL+ DEADRML MGF    + I +   + + 
Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187

Query: 180 TLLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           T LFSAT+  EL    ++  L NP +I+        + I+  +         K  LL +L
Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHA-DNVEHKTKLLARL 246

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + + + M+  I+F  ++++V  L  +L K+G     + G++ Q  R + ++  KEG + +
Sbjct: 247 ISTME-MEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAITRLKEGVVNV 305

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI DV +V NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D K + 
Sbjct: 306 LVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLG 365

Query: 359 AIEKLIEK 366
            I++  E+
Sbjct: 366 KIKRYAEE 373


>gi|90580587|ref|ZP_01236392.1| putative ATP-dependent RNA helicase SrmB [Vibrio angustum S14]
 gi|90438245|gb|EAS63431.1| putative ATP-dependent RNA helicase SrmB [Photobacterium angustum
           S14]
          Length = 416

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 215/370 (58%), Gaps = 7/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF++L L  +++ A+ + GY +PT +Q + IP  L   DV   A TGTGKTA+F+LPM+ 
Sbjct: 3   DFSELELDSELLRAIEEIGYSRPTVVQAQAIPHALDGKDVMASAPTGTGKTAAFLLPMIQ 62

Query: 62  ILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+   R R    R LIL PTRELA QVAD      K   L V  + GGI ++   + L 
Sbjct: 63  HLQDFPRKRPGPARILILTPTRELAIQVADQARALAKYTTLKVFTITGGISYDEHAEMLG 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR++++    K     IE L++DEADRMLDMGF   ++ +     + RQ+
Sbjct: 123 KTQDIVVATPGRLMEYIEAEKFDCRAIECLILDEADRMLDMGFGKIVERLNHECRWRRQS 182

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT+  + +++ SE  L  P  +EVN  PS       H           K ALL+ +
Sbjct: 183 LLFSATLEGKGVREFSETILNEP--VEVNADPSRRERKKIHQMYLRCDNMDHKLALLENI 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ Q   +  IIF   ++ +  L   LE  G     I G + Q +R  +++ F++G + +
Sbjct: 241 IKEQ--AERTIIFVKTRERLGILRGQLEAMGIPCNWIQGEMAQAARTNMITRFRDGVVNV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+PDV HV NFD+P  AE Y+HRIGRT RAG+ G A +LV   D   I+
Sbjct: 299 LIATDVAARGIDLPDVSHVINFDLPRTAEVYVHRIGRTARAGKKGTAISLVEAHDQSMIE 358

Query: 359 AIEKLIEKKV 368
            I + ++++V
Sbjct: 359 RISRYMKEEV 368


>gi|183600257|ref|ZP_02961750.1| hypothetical protein PROSTU_03809 [Providencia stuartii ATCC 25827]
 gi|188020045|gb|EDU58085.1| hypothetical protein PROSTU_03809 [Providencia stuartii ATCC 25827]
          Length = 428

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 143/373 (38%), Positives = 221/373 (59%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F+D  L PKV+ A+   G+   TPIQ  T+P  ++  DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVIEALNKKGFNFCTPIQASTLPFTVEGKDVAGQAQTGTGKTLAFLTSTFHY 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT       +V  PR LI+ PTRELA Q+  + ++  +   L + L  GG  ++ Q K 
Sbjct: 71  LLTHPSIEGKKVNQPRALIMAPTRELAVQIYSDAKELAEYTGLKMGLAYGGDGYDEQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
           L+ G D+LI T GR++D+  +G + +N ++++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LQNGVDILIGTTGRLIDYAKQGHIDLNAVQVVVLDEADRMYDLGFIKDIRWLFRRMPAVT 190

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
            R  LLFSAT++  +++++   + +P+ IEV     T   I E  F   Y    +K  LL
Sbjct: 191 ERLNLLFSATLSYRVRELAFEQMNSPEYIEVEPLQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q LL+ ++  +  IIF N K     +   L   G  V  + G++ Q+ R++IL  F +G 
Sbjct: 248 QTLLE-EEWPERCIIFANTKHRCDEIWAHLAADGHRVGLLTGDVAQKKRLRILEEFTQGN 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE+ I+  +
Sbjct: 367 NLPAIEEYIQHSI 379


>gi|254671737|emb|CBA09550.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha153]
          Length = 399

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 140/359 (38%), Positives = 209/359 (58%), Gaps = 11/359 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 5   FADLNLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIMASAQTGSGKTAAFLLPTLQK 64

Query: 63  LEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
           L K   +  + PR L+L PTRELAAQV  N   Y KN  +  TV++ +GG  F  Q + L
Sbjct: 65  LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  RQ
Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    + K++    ++P+ IEV       +  E        ++  +  LL  +L
Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNR--LLDHIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  +++
Sbjct: 242 RDAD-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG--RTGRAGRHGKAFTLVAKEDIKH 356
           VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIG  R+GR   HG        E I+ 
Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGPYRSGRT--HGYCDYFCRSERIRQ 357


>gi|255548421|ref|XP_002515267.1| hypothetical protein RCOM_1346600 [Ricinus communis]
 gi|223545747|gb|EEF47251.1| hypothetical protein RCOM_1346600 [Ricinus communis]
          Length = 791

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 138/356 (38%), Positives = 216/356 (60%), Gaps = 4/356 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D   S +++ A++  GY KPT IQ + +P+VL   D+ GIA+TG+GKTA+FVLPM+  
Sbjct: 226 FEDCSFSMQLMNAIVKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVH 285

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++    +   P  +I  PTRELA Q+    +K+ K++ + V+ + GG+    Q K+L+
Sbjct: 286 IMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFSKSHGIRVSAVYGGMSKLEQFKELK 345

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+++ TPGR++D      L M+    LV+DEADRM D+GF P I++I   +   RQT
Sbjct: 346 AGCDIVVATPGRLIDLLKMKALNMSKATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 405

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  +++K++   L +P R+ V       E I        +   K   L ++L  
Sbjct: 406 LLFSATMPRKVEKLAREILSDPIRVTVGEVGMANEDITQVVQVIPSDAEKLPWLFEKLPG 465

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D   + ++F ++K  V  +   L ++GF V A+HG+ DQ SRM+IL  FK G   +++
Sbjct: 466 MIDD-GDVLVFASKKATVDEIESQLAQKGFKVAALHGDKDQASRMEILQKFKSGVYHVLI 524

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIK 355
           A+D+AARGLDI  +  V NFD+    + ++HRIGRTGRAG + G A+TL+ +++ +
Sbjct: 525 ATDVAARGLDIKSLKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLITQKEAR 580


>gi|119614684|gb|EAW94278.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_c [Homo
           sapiens]
          Length = 936

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 253 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 312

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 313 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 368

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 369 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 428

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 429 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 488

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I
Sbjct: 489 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 547

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 548 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 604


>gi|325285240|ref|YP_004261030.1| DEAD/DEAH box helicase domain-containing protein [Cellulophaga
           lytica DSM 7489]
 gi|324320694|gb|ADY28159.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
           7489]
          Length = 602

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 128/365 (35%), Positives = 222/365 (60%), Gaps = 8/365 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F  LGL   ++ A++D G+  P+ +Q K IP++L +  D+  +AQTGTGKTA+F  P++ 
Sbjct: 4   FEALGLDKSLLDAIVDLGFESPSEVQEKAIPILLNEDTDLVALAQTGTGKTAAFGFPLI- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120
             +K  +  R  + LIL PTREL  Q+ +  + Y K    L V  + GG     Q  ++ 
Sbjct: 63  --QKIDSSSRTTQGLILSPTRELCLQITNELKAYSKYEKGLNVVAIYGGASITDQANQIR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +++ TPGRI D  +RG + ++ ++  V+DEAD ML+MGF   I++I S  P  + T
Sbjct: 121 RGAQIVVATPGRIKDMISRGMVNISKLDYCVLDEADEMLNMGFYEDIKDILSNTPDEKFT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  +++ F+ NP+ I V + ++ A T++H +     +   +   L++L  
Sbjct: 181 WLFSATMPREVSTIAKKFMHNPQEITVGSKNAGATTVQHEYYVVGGR--DRYPALKRLAD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   + + ++FC  K++   +   L + G++  A+HG++ Q  R  +++ F++  IQ++V
Sbjct: 239 TNPDIFS-VVFCRTKRDTQRVAEKLIEDGYNAGALHGDLSQNQRDLVMNAFRKKQIQMLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV N+ +P+  E Y HR GRTGRAG+ G +  +V + +++ I A+
Sbjct: 298 ATDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGVSMVIVTRSELRKIKAL 357

Query: 361 EKLIE 365
           E+ ++
Sbjct: 358 ERKLQ 362


>gi|304383161|ref|ZP_07365635.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella marshii
           DSM 16973]
 gi|304335738|gb|EFM01994.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella marshii
           DSM 16973]
          Length = 608

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 216/369 (58%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+S ++  A+ + G+  P P+Q + IP +L   +DV  +AQTGTGKTA++ LP++ 
Sbjct: 4   FEELGVSEEIRHAIEELGFEHPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAYGLPLIQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            ++      +  + L+L PTREL  Q+AD+   + K  N L V  + GG   E Q + L 
Sbjct: 64  KID---TESKTTQALVLSPTRELCLQIADDLTAFSKYINGLHVVPVYGGASIETQIRSLR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGR++D  +RG   + N+  +V+DEAD ML+MGF   I  I   +P  R T
Sbjct: 121 HGVQIIVATPGRLIDLMHRGVAKLENVSNVVLDEADEMLNMGFSDSINEIFEGIPADRNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E++K++ N+L + K I V + +  AE + H +    A+   K   L++++ 
Sbjct: 181 LLFSATMSREIEKIARNYLHDHKEIVVGSRNEGAENVNHIYYMVNAK--DKYLALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   IIFC  K+    +   L   G++   +HG++ Q  R   +  F++   Q +V
Sbjct: 239 YYPHI-FAIIFCRTKRETQEVADKLIHDGYNAEPLHGDLSQPQRDLTMQKFRQHMTQFLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   + AI
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDVESYTHRSGRTGRAGKKGTSIAIIHTRERSKMRAI 357

Query: 361 EKLIEKKVD 369
           EK+I KK D
Sbjct: 358 EKIIGKKFD 366


>gi|206725493|ref|NP_001126368.1| ATP-dependent RNA helicase DDX42 [Pongo abelii]
          Length = 942

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSMWEQA 370

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I
Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 549

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606


>gi|322799398|gb|EFZ20748.1| hypothetical protein SINV_08125 [Solenopsis invicta]
          Length = 764

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 138/356 (38%), Positives = 212/356 (59%), Gaps = 8/356 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F   G    ++  +    Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 256 FGHFGFDDALIKTIRKNEYTQPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFIWPMLVH 315

Query: 62  ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++   +    P  LIL PTREL+ Q+    +K+GK YN+ V    GG     Q+K LE
Sbjct: 316 IMDQRELKAGDGPIGLILAPTRELSQQIYQEAKKFGKVYNIQVCCCYGGGSKWEQSKALE 375

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA++++ TPGR++D        +  +  LV+DEADRM DMGF P +++I + V   RQT
Sbjct: 376 SGAEIVVATPGRMIDLVKMKATNLTRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQT 435

Query: 181 LLFSATMTDELQKVSENFLQNPKRI-EVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT   +++K++ + L +P RI + +   +  +  +H  +       K   LLQ L+
Sbjct: 436 LLFSATFKKKVEKLARDILTDPIRIVQGDVGEANTDVTQHVIMFHNNPSGKWNWLLQNLV 495

Query: 240 Q--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  S  ++   +IF  +K N   L ++L+ + F V  +HG++DQ  R K+++ FK+  + 
Sbjct: 496 EFLSAGSL---LIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQLERNKVITAFKKKDVS 552

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            +VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G AFTLV ++D
Sbjct: 553 TLVATDVAARGLDIPHIKTVVNYDVARDIDTHTHRIGRTGRAGEKGTAFTLVTEKD 608


>gi|289192981|ref|YP_003458922.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus sp.
           FS406-22]
 gi|288939431|gb|ADC70186.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus sp.
           FS406-22]
          Length = 362

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 230/372 (61%), Gaps = 14/372 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59
           M+F +L LS  ++ A+ + G+ KPT IQ+K IPL L  + ++   A+TG+GKTA+F +P+
Sbjct: 1   MNFNELNLSDNILNAIKNKGFEKPTDIQMKVIPLFLNDKGNIVAQARTGSGKTAAFAIPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + ++ +          +IL PTRELA QVAD  E    N NL +A + GG     Q K L
Sbjct: 61  IELVNENNG----IEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL 116

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            + A++++ TPGRILDH NRG L + N++  ++DEAD ML+MGF+  ++ I +     ++
Sbjct: 117 -KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFVEDVERILNACNRDKR 175

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  E+  +++ ++ +   I+    ++    IE  ++      +++  +L ++L
Sbjct: 176 ILLFSATMPREILNLAKKYMGDYSFIKAKINAN----IEQSYIEV--NENERFEVLCRIL 229

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +++D    G++FC  KK+   L + L   GF   AIHG+++Q  R K++  FK+  I+++
Sbjct: 230 KNKDFY--GLVFCKTKKDTKELANMLRDIGFKAGAIHGDLNQSQREKVIRLFKQKRIKIL 287

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+ +RG+D+ D+  V N+ +P   E+Y+HRIGRTGRAG+ GKA +++ + + K +  
Sbjct: 288 IATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLKY 347

Query: 360 IEKLIEKKVDWL 371
           IE++ + K+  L
Sbjct: 348 IERMTKLKIRKL 359


>gi|57101724|ref|XP_541930.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 49
           isoform 1 [Canis familiaris]
          Length = 488

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 156/416 (37%), Positives = 234/416 (56%), Gaps = 17/416 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178
             V+I TPGR+ DH        +  I  LV+DEADR+L+ G   F   ++ I + VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+TD L+++       P   E   P  T E ++  ++    +   K A L  L
Sbjct: 181 QTLLFSATLTDTLKELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKV--KDAYLVHL 238

Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q+ QD  ++   IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK   
Sbjct: 239 IQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSI 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI 
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            + AIE+ I+K+++ L+ + + +   L ++++      R+   I  ++  FD +K+
Sbjct: 359 LVHAIEEQIKKQLEELSVEEAKVLQILTQVNV-----VRRECEIKLEAANFDEKKE 409


>gi|238783510|ref|ZP_04627532.1| DEAD/DEAH box helicase domain protein [Yersinia bercovieri ATCC
           43970]
 gi|238715565|gb|EEQ07555.1| DEAD/DEAH box helicase domain protein [Yersinia bercovieri ATCC
           43970]
          Length = 612

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 125/323 (38%), Positives = 206/323 (63%), Gaps = 6/323 (1%)

Query: 44  IAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LT 102
           +AQTG+GKTA+F LP+L  +   +A ++ P+ L+L PTRELA QVA+    + K+ N + 
Sbjct: 1   MAQTGSGKTAAFGLPLLHNI---KAELKAPQVLVLAPTRELAIQVAEALSSFSKDINGVN 57

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
           V  L GG  ++ Q + L +G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MG
Sbjct: 58  VVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMG 117

Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           FI  ++ I + +P   QT LFSATM + +++++  F+++P+ + + +  +T   I   F 
Sbjct: 118 FIEDVETIMAQIPAEHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSFW 177

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                Y+KK AL+ + L+S+D     IIF   K   + +  +LE+ G+S  A++G+++Q 
Sbjct: 178 RVGGGYNKKEALV-RFLESED-FDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQS 235

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L   K+G + +++A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR 
Sbjct: 236 LREQTLDRLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 295

Query: 343 GKAFTLVAKEDIKHIDAIEKLIE 365
           G+A   V   + + +  IE+ ++
Sbjct: 296 GRALLFVENRERRLLQNIERTMK 318


>gi|119962035|ref|YP_948481.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
 gi|119948894|gb|ABM07805.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
          Length = 566

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 130/370 (35%), Positives = 214/370 (57%), Gaps = 9/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  +   +V ++ DAG   P PIQ  T+P+ L  HD+ G A+TGTGKT  F +P L  
Sbjct: 39  FADFNVRADIVESLADAGITHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGIPALQR 98

Query: 63  L----EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    + G A++ +P   + L++ PTRELA QVA++ +   +  N  +A + GG  +E Q
Sbjct: 99  VAGRDDAGYAKLAVPGAPQALVIVPTRELAVQVANDLQAASRKRNARIATIYGGRAYEPQ 158

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L++G ++++ TPGR++D + +  L + N++++++DEAD MLD+GF+P ++ + +  P
Sbjct: 159 IDALQKGVEIVVGTPGRLIDLYKQKHLSLKNVKMVILDEADEMLDLGFLPDVETLIAGTP 218

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234
             RQTLLFSATM   +  ++  ++  P  I    P+    T        Y  +S  K  +
Sbjct: 219 AVRQTLLFSATMPGPVIAMARRYMTQPTHIRAADPNDEGLTKRDIRQLIYRAHSMDKTEV 278

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + ++LQ++   +  IIF   K+    +   L  +GF+  AIHG++ Q +R + L  F+  
Sbjct: 279 VARILQARGRGRT-IIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRNN 337

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+      + Y+HR+GRTGRAG  G A T V  +D+
Sbjct: 338 KVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWDDM 397

Query: 355 KHIDAIEKLI 364
                I K +
Sbjct: 398 PRWGLINKAL 407


>gi|28199914|ref|NP_780228.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa Temecula1]
 gi|32363278|sp|Q879Y6|RHLB_XYLFT RecName: Full=ATP-dependent RNA helicase rhlB
 gi|28058045|gb|AAO29877.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
          Length = 543

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 138/375 (36%), Positives = 224/375 (59%), Gaps = 10/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F+   L P ++  +  AG+   TPIQ  T+P+ L   D+ G AQTGTGKT +F++ ++
Sbjct: 9   LNFSSFDLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVV 68

Query: 61  TILEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L      V      PR LIL PTRELA Q+ ++  K+G N  L  AL+ GG+ ++ Q 
Sbjct: 69  NRLLSSPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDRQR 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L +GADV+I TPGR++D+  + +++ +   EI V+DEADRM D+GFI  I+ I   +P
Sbjct: 129 EMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLP 188

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
              +RQTLLFSAT++  + +++  ++  P+++   T S T   +       +    +K  
Sbjct: 189 ERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIY--FPAEEEKIP 246

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  LL   + M+  ++F N K  V  +  +L++ G+ V  + G++ QR R  +L+ F++
Sbjct: 247 LLLGLLSRNEGMRT-MVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQK 305

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +  
Sbjct: 306 GQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERY 365

Query: 354 IKHIDAIEKLIEKKV 368
              +  IE  IE+K+
Sbjct: 366 AMSLPDIEAYIEQKI 380


>gi|291537820|emb|CBL10931.1| Superfamily II DNA and RNA helicases [Roseburia intestinalis XB6B4]
          Length = 535

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 217/368 (58%), Gaps = 8/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P+V+ A+ + G+ + TPIQ + IP+V+   DV G AQTGTGKTASF +P+L  
Sbjct: 11  FDQLDLYPQVLRAIAEMGFEEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGIPVLHK 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           ++    + ++   +IL PTRELA QVAD   K  K  + + +  + GG     Q K L+ 
Sbjct: 71  VDPNNKKTQV---IILSPTRELAIQVADEIRKLAKYMHGVKILPVYGGQEISRQIKALKG 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180
           GA ++I TPGR++DH  R  +    +  +V+DEAD ML+MGF   I+ I   +P   RQT
Sbjct: 128 GAQIIIGTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEYIPEEGRQT 187

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +  +++ +  +   I+V     T   IE  +     +   K  +L +LL 
Sbjct: 188 VLFSATMPKPILDITKKYQHDAVTIKVVKKELTVPNIEQYYYDV--KRKDKIEVLTRLLD 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  K  ++FCN K+ V  L   L+ +G+    +HG++ Q  R +++  F+ G  ++++
Sbjct: 246 YYNP-KLSLVFCNTKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILI 304

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G+AFT V  +++  +  I
Sbjct: 305 ATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDI 364

Query: 361 EKLIEKKV 368
            +  + K+
Sbjct: 365 MRYCKTKI 372


>gi|114669834|ref|XP_001147587.1| PREDICTED: DEAD box polypeptide 42 protein isoform 4 [Pan
           troglodytes]
          Length = 775

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 92  FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 151

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 152 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 207

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 208 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 267

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 268 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 327

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I
Sbjct: 328 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 386

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 387 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 443


>gi|89900206|ref|YP_522677.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
 gi|89344943|gb|ABD69146.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
          Length = 623

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 148/417 (35%), Positives = 235/417 (56%), Gaps = 55/417 (13%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH----------DVCGIAQTGTGKT 52
           F  LGL+P+++ AV D G+ +PT +Q+KTIPL +Q H          D+   +QTG+GKT
Sbjct: 54  FVTLGLAPELIQAVKDLGFTQPTTVQLKTIPLAMQGHSASDDAARFIDLMVSSQTGSGKT 113

Query: 53  ASFVLP----MLTILEKGRARVR-----------------------------------MP 73
           A+F+LP    +LT + +  A+ R                                    P
Sbjct: 114 AAFLLPVLHTLLTQMAQAEAKERSDFERAVADAAAKGEAPPKRAKRKDPTNPRHFAPAAP 173

Query: 74  RTLILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
             LI+ PTRELA QVA D  +       L VA ++GG+P++ Q  KL+  A++++ TPGR
Sbjct: 174 GALIVCPTRELAQQVAHDAIDLVQHCRGLRVANIVGGMPYQLQIAKLQN-ANLVVATPGR 232

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           +LD     ++ ++ ++ LV+DEADRMLD+GF   +  I  L    +QT++FSAT    +Q
Sbjct: 233 LLDLQRSMQIKLDQVQFLVVDEADRMLDLGFSDDLAEINQLTIERKQTMMFSATFAPRIQ 292

Query: 193 KVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
           +++   ++ P+R+++++P      I +  F A  AQ+ +K  LL   L+   T+   ++F
Sbjct: 293 QLASRVMREPQRLQIDSPQEKHANISQKLFWADNAQHKRK--LLDHWLRDT-TINQALVF 349

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
            + +     L + L+++GFS  A+HG + Q  R + L   ++G +Q++VA+D+AARG+D+
Sbjct: 350 ASTQIECDGLANDLQQEGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVAARGIDV 409

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           P V HVFNF +P +AE+Y HRIGRTGRAGR G A T     D + I  IE    +++
Sbjct: 410 PTVTHVFNFGLPMKAEDYTHRIGRTGRAGRDGIAVTFAEFRDRRKIMDIEHYTHQQL 466


>gi|75061727|sp|Q5R7D1|DDX42_PONAB RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|55731230|emb|CAH92329.1| hypothetical protein [Pongo abelii]
          Length = 942

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSMWEQA 370

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I
Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 549

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606


>gi|45446743|ref|NP_031398.2| ATP-dependent RNA helicase DDX42 [Homo sapiens]
 gi|45446747|ref|NP_987095.1| ATP-dependent RNA helicase DDX42 [Homo sapiens]
 gi|74750541|sp|Q86XP3|DDX42_HUMAN RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42; AltName: Full=RNA helicase-like protein;
           Short=RHELP; AltName: Full=RNA helicase-related protein;
           Short=RNAHP; AltName: Full=SF3b DEAD box protein;
           AltName: Full=Splicing factor 3B-associated 125 kDa
           protein; Short=SF3b125
 gi|29420431|dbj|BAC66466.1| RNA helicase-related protein [Homo sapiens]
 gi|62205357|gb|AAH93081.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Homo sapiens]
 gi|119614683|gb|EAW94277.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_b [Homo
           sapiens]
 gi|168277556|dbj|BAG10756.1| ATP-dependent RNA helicase DDX42 [synthetic construct]
          Length = 938

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I
Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 549

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606


>gi|326479821|gb|EGE03831.1| ATP-dependent RNA helicase DBP2 [Trichophyton equinum CBS 127.97]
          Length = 536

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 215/373 (57%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ KPTPIQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 122 FDEAGFPQYVMSEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 181

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 182 INAQPLLAPGDG----PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQI 237

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 238 RDLTRGVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 297

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT ++SAT   ++++++ +FLQ+  ++ + + + +A       V   +++ K+  +++
Sbjct: 298 DRQTCMWSATWPKDVRQLANDFLQDYIQVYIGSQALSANHRITQIVEVVSEFEKRDRMIK 357

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L +  +  K+ + IF   K+   ++   L + G+   +IHG+  Q  R  +L+ FK G 
Sbjct: 358 HLERIMEDKKSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 417

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+A+RG+D+ D+ HV N D PN +E+Y+HRIGRTGRAG +G A TL   E+ K
Sbjct: 418 SPIMVATDVASRGIDVRDITHVLNHDYPNNSEDYVHRIGRTGRAGANGTAITLFTTENAK 477

Query: 356 HI-DAIEKLIEKK 367
              D ++ L E K
Sbjct: 478 QARDLVKILTESK 490


>gi|255580688|ref|XP_002531166.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223529236|gb|EEF31209.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 585

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 145/379 (38%), Positives = 217/379 (57%), Gaps = 15/379 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA++ L   +   +    YVKPTP+Q   IP++L   D+   AQTG+GKTA+F  P+++ 
Sbjct: 130 FAEIDLGEALNQNIRRCKYVKPTPVQRNAIPIILAGRDLMACAQTGSGKTAAFCFPIISG 189

Query: 62  -ILEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            + E+   R R PRT     LIL PTREL+ Q+ D  +K+     + V +  GG P   Q
Sbjct: 190 IMREQYVQRPRGPRTVYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQ 249

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV- 174
            ++LERG D+L+ TPGR++D   R ++ +  I  L +DEADRMLDMGF P I+ I   + 
Sbjct: 250 LRELERGVDILVATPGRLVDLLERARISLQMIRYLALDEADRMLDMGFEPQIRKIVEQMD 309

Query: 175 ---PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYS 229
              P  RQT+LFSAT   E+Q+++ +FL +   + V    S+ + I     FV    + S
Sbjct: 310 MPPPGRRQTMLFSATFPKEIQRLASDFLASYIFLAVGRVGSSTDLIVQRVEFVHETDKRS 369

Query: 230 KKCALLQQLLQSQDTMKNGI--IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
               LL    +++  +K+ +  +F   KK   +L + L   GF    IHG+  Q+ R   
Sbjct: 370 HLMDLLHAQRETEINIKHSLTLVFVETKKGADSLENWLCVNGFPATTIHGDRTQQEREMA 429

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G A  
Sbjct: 430 LRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATA 489

Query: 348 LVAKEDIKHIDAIEKLIEK 366
              + ++     +  L+++
Sbjct: 490 FFNENNLSLARPLADLMQE 508


>gi|332243110|ref|XP_003270725.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Nomascus leucogenys]
          Length = 938

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I
Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 549

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606


>gi|291406357|ref|XP_002719521.1| PREDICTED: DEAD box polypeptide 42 protein [Oryctolagus cuniculus]
          Length = 935

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I
Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 549

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606


>gi|167549858|ref|ZP_02343616.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205325031|gb|EDZ12870.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 457

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 139/355 (39%), Positives = 212/355 (59%), Gaps = 8/355 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L  ++     +   + L+L 
Sbjct: 22  GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF  Q   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGVQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQTLLFSAT  + +  +S   
Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            Q P RIE++T  +    IE  F  T A   +K +LLQ LL SQ    + ++FCN KK+ 
Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L   G S  A+HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
           N+++    E ++HRIGRT RAG  G A +  A E+ +  + + ++++ K++WLN 
Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369


>gi|297620018|ref|YP_003708123.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           voltae A3]
 gi|297378995|gb|ADI37150.1| DEAD/DEAH box helicase domain protein [Methanococcus voltae A3]
          Length = 584

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 210/369 (56%), Gaps = 9/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           M+F DL +S  ++  + + G+ + T IQ K IP+VL    DV G AQTGTGKT +F +P+
Sbjct: 1   MEFRDLNISESIMERLDEKGFTEATQIQEKAIPIVLDTELDVVGQAQTGTGKTLAFGIPI 60

Query: 60  L-----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           +      I E GR   +  + +IL PTRELA QV D  +   K   L +  + GG   E 
Sbjct: 61  IQKIQEKIEENGRKNKKAVKAIILTPTRELALQVHDEIDSVNKGNKLRLCTVYGGQSIEK 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G D++I TPGR++DH  R  L +N I+ LV+DEAD ML++GFI  ++ I S  
Sbjct: 121 QINKLRNGVDIVIGTPGRVIDHLGRRTLKLNEIDFLVLDEADEMLNLGFIDDVEEIMSKC 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
               + LLFSAT+   + ++ E  +   + I V + + T E  E  +     +   K  L
Sbjct: 181 KEDCRKLLFSATLPKSIMELVELHMGEYETIRVKSKALTTELTEQIYYE--VKEHDKFEL 238

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L++++  +     G++FC  K +V  L   L  + +S  A+HG+++Q+ R   LS FK  
Sbjct: 239 LRRIIDKEPGF-YGLVFCKTKADVDQLMRRLNDENYSSEALHGDMNQKQRELALSRFKSH 297

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I +M+A+D+AARG+DI ++ HV N+D+P   E Y+HRIGRTGRAG  G A T V   + 
Sbjct: 298 KIDIMIATDVAARGIDINELTHVINYDIPQNPEAYVHRIGRTGRAGNKGTAITFVEPREF 357

Query: 355 KHIDAIEKL 363
           +    I K+
Sbjct: 358 RRFKYIMKI 366


>gi|253771018|gb|ACT35657.1| vasa-like protein [Haliotis asinina]
          Length = 763

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 138/362 (38%), Positives = 212/362 (58%), Gaps = 17/362 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + GL P  +  V  A Y KPTP+Q  +IP++    D+   AQTG+GKTA+F+LP LT 
Sbjct: 309 FDEAGLYPTFLKNVRKAKYEKPTPVQKYSIPIIAAGRDLMACAQTGSGKTAAFLLPTLTC 368

Query: 63  LEKGR------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           + K        + V+ P+ +I+ PTREL  Q+  +  K+ +   +   ++ GG     Q 
Sbjct: 369 MVKEGLTTSQFSEVQEPQAIIVAPTRELVVQIHSDARKFSRGTEVRPVVVYGGTSVGHQL 428

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---SL 173
           +++ERGA V++ TPGR+LD   +GK+ +  ++ L++DEADRMLDMGF P I+ +     +
Sbjct: 429 REVERGAHVVVGTPGRLLDFIEKGKIGLGKVKFLILDEADRMLDMGFEPCIRKLVEQLGM 488

Query: 174 VPFT-RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSK 230
            P T RQTL+FSAT   E+QK++ +FL +   + V         +E  F  V    +  K
Sbjct: 489 PPKTQRQTLMFSATFPTEIQKLAADFLNDYLFLTVGRVGGANTDVEQNFFEVDRLQKREK 548

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            C++L     ++      ++F  QK+N   L   L + GF   +IHG+  QR R + L +
Sbjct: 549 LCSIL-----TESGSDKTLVFVEQKRNADFLASYLSQSGFPTTSIHGDRLQREREEALRD 603

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK GT  +++A+ +AARGLDIP+V HV N+D+P+  + Y+HRIGRTGR G  GKA +  +
Sbjct: 604 FKRGTAPILIATSVAARGLDIPEVKHVVNYDLPSSIDEYVHRIGRTGRCGNLGKATSFYS 663

Query: 351 KE 352
            +
Sbjct: 664 HD 665


>gi|297847866|ref|XP_002891814.1| hypothetical protein ARALYDRAFT_474570 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337656|gb|EFH68073.1| hypothetical protein ARALYDRAFT_474570 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 501

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/386 (34%), Positives = 214/386 (55%), Gaps = 17/386 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+G    V+  +  AG+ +PTPIQ +  P+ ++  D+ GIA+TG+GKT S++LP +  
Sbjct: 101 FRDVGFPDYVLEEIKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTISYLLPAIVH 160

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                IL  G      P  L+L PTRELA Q+     K+G +  +    + GG+P   Q 
Sbjct: 161 VNAQPILAPGDG----PIVLVLAPTRELAVQIQQEASKFGSSSKIKSTCIYGGVPKGPQV 216

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L++G +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 217 RDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRP 276

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCA 233
            RQTL +SAT   E++++S+ FL NP ++ + +    A       V   ++   Y+K   
Sbjct: 277 DRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVK 336

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL+ ++     +    +F + KK    +   L   G+   +IHG+  Q  R  +LS F+ 
Sbjct: 337 LLEDIMDGSRIL----VFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRS 392

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +M A+D+AARGLD+ DV +V N+D P   E+Y+HRIGRTGRAG  G A+T     +
Sbjct: 393 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVAN 452

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            +    +  ++E+    ++ +L+S+ 
Sbjct: 453 ARFAKELSNILEEAGQKVSPELASMG 478


>gi|149757285|ref|XP_001503455.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 isoform 1
           [Equus caballus]
          Length = 483

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 151/374 (40%), Positives = 215/374 (57%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178
             V+I TPGR+ DH        +  I  LV+DEADR+L+ G   F   ++ I + VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSSTFSIKKIRFLVLDEADRLLEQGCTDFTVDLEAILAAVPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+TD L+++       P   E   P  T E ++  ++    +   K A L  L
Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKV--KDAYLVHL 238

Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q+ QD  ++   IIF N  K    LC  L K GF   A+H  + Q+ R   L+ FK   
Sbjct: 239 IQNFQDEHQDWSIIIFTNTCKTCQILCMMLRKFGFPAVALHSTMRQKERFAALAKFKSSI 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI 
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358

Query: 356 HIDAIEKLIEKKVD 369
            + AIE+ I+KK++
Sbjct: 359 LVHAIEEQIKKKLE 372


>gi|126667283|ref|ZP_01738256.1| ATP-dependent RNA helicase [Marinobacter sp. ELB17]
 gi|126628228|gb|EAZ98852.1| ATP-dependent RNA helicase [Marinobacter sp. ELB17]
          Length = 463

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 151/424 (35%), Positives = 236/424 (55%), Gaps = 12/424 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F+DL L  ++  A+   G+   TPIQ +T+P  L   D+ G AQTGTGKTA+F++  +  
Sbjct: 44  FSDLNLDHRLQQAIAAIGFEYCTPIQAETLPWTLACQDLIGQAQTGTGKTAAFLITAIQT 103

Query: 61  ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              T +E  +     PR L L PTRELA Q+A + E+   +    V  ++GG+ ++ Q  
Sbjct: 104 MLETPIEDSKRFASEPRVLALAPTRELAMQIAKDAEQLCAHTGHKVVTVVGGMHYDKQRD 163

Query: 118 KLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT-SLVP 175
           +L+    D+L+ TPGR++D      + ++ I+IL++DEADRMLDMGFIP ++ I     P
Sbjct: 164 QLQNEVVDILVATPGRLIDFLGSQDVFLDQIDILILDEADRMLDMGFIPDVKRIIRKCTP 223

Query: 176 -FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTLLFSAT   ++  ++  + Q+ + +E+     TAE +E           +K  +
Sbjct: 224 KEDRQTLLFSATFNQDVLNLASMWTQSAEFVEIEPEQKTAERVEQTVY--LVGDDEKLRV 281

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L   L+  +  K  ++F N++    +L   L  QG SV  + G I Q  R+K L  FK G
Sbjct: 282 LVNYLKRPEVDK-ALVFANRRDQCRDLEEDLRNQGVSVSLMSGEIAQAKRLKTLEQFKAG 340

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           +IQ++VA+D+A RG+ +  V HVFN+++P+ AE+Y+HRIGRTGRAG  G + +   ++D 
Sbjct: 341 SIQVLVATDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGSTGVSISFAGEDDS 400

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
             + AIEK I +K+     D  +L  P++   IA+    R     P  +     R  N  
Sbjct: 401 FALPAIEKYIGQKLANEVPD-EALMVPMDNAPIARKRGRRPQGTRPTGNRSSGNRSGNSR 459

Query: 415 SQKS 418
            ++S
Sbjct: 460 PRRS 463


>gi|119505818|ref|ZP_01627884.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080]
 gi|119458316|gb|EAW39425.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080]
          Length = 409

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 144/392 (36%), Positives = 226/392 (57%), Gaps = 19/392 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L   ++  V + G+   +PIQ K +P  LQ HD  G AQTGTGKTA+F++ +   
Sbjct: 29  FHDLDLQDSLLRGVAELGFQYCSPIQAKILPHTLQGHDAIGKAQTGTGKTAAFLITIFND 88

Query: 63  L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L     +G   +  PR +I+ PTREL  Q+A + E  GK   L    +IGG  ++ Q  K
Sbjct: 89  LLCNPPEGERYLAEPRAVIIAPTRELVMQIAADAEDLGKFTGLQTVTMIGGADYQKQLAK 148

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           ++ R  D+++ TPGR++D   R  L ++ +E LV+DEADRMLDMGFIP ++ I    P  
Sbjct: 149 VQSRVVDLVVATPGRLIDFMQRRDLFLDRVETLVLDEADRMLDMGFIPQVKRIVRATPRK 208

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCAL 234
             RQTLLFSAT T ++  +++ +  +P  +E+     +TA   +  ++ T  +  K   +
Sbjct: 209 EDRQTLLFSATFTQDILNLAQQWTFDPVTVEIEPERVATATVDQRVYLVTSHERLK---V 265

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L ++L+  D +   I+F N++  V +L   L K G S   + G I Q  R K L++FK G
Sbjct: 266 LLKVLRGPDAVST-IVFANRRDQVRSLHEKLRKAGISCGILSGEITQARRTKTLADFKSG 324

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I ++VA+D+A RG+ +  V HV N+++P   E+Y+HRIGRTGRAG  G + +  +++D 
Sbjct: 325 KIAVLVATDVAGRGIHVDGVSHVVNYNLPEDPEDYVHRIGRTGRAGATGISISFASEDDA 384

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
             +  IE L+ ++       L  ++PP + +D
Sbjct: 385 FLLPDIETLLGER-------LKCVSPPADLLD 409


>gi|73965191|ref|XP_861211.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           isoform 3 [Canis familiaris]
          Length = 533

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 92  FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 151

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 152 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 207

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 208 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 267

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 268 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 327

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I
Sbjct: 328 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 386

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 387 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 443


>gi|239946654|ref|ZP_04698407.1| ATP-dependent RNA helicase RhlE [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239920930|gb|EER20954.1| ATP-dependent RNA helicase RhlE [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 410

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 213/364 (58%), Gaps = 13/364 (3%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +  LS +++ A+      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP++    
Sbjct: 3   NFNLSEELIIALETMNITEPTEIQKQSIPVAIAGSDILASSQTGSGKTLAYLLPLIDSFI 62

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           K +        LIL PTRELA Q+     K    Y +  A+LIGG P   Q  +L++   
Sbjct: 63  KNKTTA-----LILVPTRELATQIHSTLNKVTTPYKINSAVLIGGEPMPKQFMQLKKNPK 117

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG    ++ I   +P  RQ L+FS
Sbjct: 118 VIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEGINKFLPEKRQVLMFS 177

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQSQ 242
           ATM   +  +S+ +L NP RI V   +  A  I  E   ++   ++S+   L +QL   +
Sbjct: 178 ATMPKHIIALSQKYLNNPVRITVGATNKAAAEIKQESLHISDKEKFSE---LTKQLGNRE 234

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            ++   IIF   K++   L   L+ +     AIHG++ Q  R +++ +F++   ++MVA+
Sbjct: 235 GSV---IIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQHQRERVILSFRKSNHRIMVAT 291

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +D+    AI++
Sbjct: 292 DVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGYALSFISPDDVIRWRAIDR 351

Query: 363 LIEK 366
           L+ K
Sbjct: 352 LVNK 355


>gi|168241214|ref|ZP_02666146.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194447332|ref|YP_002045697.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194405636|gb|ACF65855.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205339660|gb|EDZ26424.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 457

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 139/355 (39%), Positives = 212/355 (59%), Gaps = 8/355 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L  ++     +   + L+L 
Sbjct: 22  GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF  Q   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGVQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQTLLFSAT  + +  +S   
Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            Q P RIE++T  +    IE  F  T A   +K +LLQ LL SQ    + ++FCN KK+ 
Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L   G S  A+HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
           N+++    E ++HRIGRT RAG  G A +  A E+ +  + + ++++ K++WLN 
Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369


>gi|154490038|ref|ZP_02030299.1| hypothetical protein PARMER_00267 [Parabacteroides merdae ATCC
           43184]
 gi|154089480|gb|EDN88524.1| hypothetical protein PARMER_00267 [Parabacteroides merdae ATCC
           43184]
          Length = 607

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 139/369 (37%), Positives = 219/369 (59%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG++  ++ A+ + GY  P P+Q + IP +L   +DV  +AQTGTGKTA+F LP   
Sbjct: 4   FEELGVAAPILKAIQEMGYESPMPVQEEVIPFLLGDDNDVIALAQTGTGKTAAFGLP--- 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           IL+K       P+ L+L PTREL  Q+AD+   Y K   NL V  + GG   E+Q K L+
Sbjct: 61  ILQKIDVTTYHPQALVLCPTRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIESQIKTLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR+LD  NR  + ++ ++ +++DEAD ML+MGF   I  I + VP  R  
Sbjct: 121 RGVHVVVATPGRLLDLMNRKTVDLSLVKNVIMDEADEMLNMGFTDSINAILAEVPENRNM 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+  +++ +++NPK I +   +   + I   +    A+   K   L+++  
Sbjct: 181 LLFSATMPKEIANITKKYMKNPKEIVIGNKNEGNKNIRDIYYMVQAR--DKYLALKRIAD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GI+FC  +K    +   L + G++  ++HG + Q  R  ++  F+   IQL+V
Sbjct: 239 FYPNI-YGIVFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRVKNIQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G + ++   ++   I  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGISISICHVKEKGKIREI 357

Query: 361 EKLIEKKVD 369
           E++I KK +
Sbjct: 358 ERIINKKFE 366


>gi|84494615|ref|ZP_00993734.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
 gi|84384108|gb|EAP99988.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
          Length = 540

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 133/380 (35%), Positives = 216/380 (56%), Gaps = 25/380 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D  + P +V A+   G   P PIQ  T+P+ L  HD+ G A+TGTGKT  F +P+L  
Sbjct: 35  FSDFAIHPDIVSALAAHGITTPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPLLNK 94

Query: 62  ILEKGRARVR------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           ++ +G  +         P+ L + PTRELA QV+ + E+ GK   + V  + GG  +E Q
Sbjct: 95  VIARGDDKWDGFVHKGKPQALAVAPTRELAVQVSADLERAGKARGIRVLTVYGGRAYEPQ 154

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L +G +V++ TPGR++D   +G L +++ + +V+DEAD MLD+GF+P ++ + ++  
Sbjct: 155 IDALTKGVEVVVGTPGRLIDLAKQGHLDLSHAKTVVLDEADEMLDLGFLPDVEKLLAMTS 214

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRI------EVNTPSSTAETIEHCFVATYAQYS 229
             RQT+LFSATM   +  ++  ++  P  I      E +T  +     +H +    A   
Sbjct: 215 PGRQTMLFSATMPGAVVALARRYMTQPTHIRAMQEGEGDTSQTVKAITQHVY---RAHAM 271

Query: 230 KKCALLQQLLQSQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            K  +L ++LQ+     NG    I+F   K+    +   L ++GF+  AIHG++ Q +R 
Sbjct: 272 DKVEMLARMLQA-----NGRGLTIVFSRTKRTAAKVADDLAERGFAAAAIHGDLGQGARE 326

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L  F+ G + ++VA+D+AARG+D+ +V HV N+  P   + Y+HRIGRTGRAG+ G A
Sbjct: 327 QALRAFRSGKVDVLVATDVAARGIDVENVTHVINYQCPEDEKTYVHRIGRTGRAGQTGIA 386

Query: 346 FTLVAKEDIKHIDAIEKLIE 365
            T V  +D+     I K ++
Sbjct: 387 VTFVDWDDLHRWTMINKTLD 406


>gi|296113215|ref|YP_003627153.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis RH4]
 gi|295920909|gb|ADG61260.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis RH4]
 gi|326560208|gb|EGE10596.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis 7169]
 gi|326562767|gb|EGE13063.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis 103P14B1]
 gi|326567877|gb|EGE17978.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis 12P80B1]
 gi|326570281|gb|EGE20326.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis BC8]
 gi|326573316|gb|EGE23284.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis 101P30B1]
 gi|326576868|gb|EGE26774.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis O35E]
          Length = 391

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 149/381 (39%), Positives = 231/381 (60%), Gaps = 25/381 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DL LS  ++ AV    + + TPIQ + +P  L   D  G AQTGTGKTA+F   ++T
Sbjct: 8   NFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATF---LIT 64

Query: 62  ILEKGRAR------VRM---PRTLILEPTRELAAQV-AD--NFEKYGKNYNLTVALLIGG 109
           I+E    R      +R    PR L+L PTRELA Q+ AD     ++ + YNL +    GG
Sbjct: 65  IIESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCRELTRFSQLYNLCIT---GG 121

Query: 110 IPFEAQNKKL-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
             F+ Q ++L +R  D+LI TPGRI+D  N+G+L ++ +E+ V+DEADRMLDMGFIP I+
Sbjct: 122 SDFDKQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIK 181

Query: 169 NITSLVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
            I   +P    RQ+LLFSAT   ++  ++  +L  P  +E+   S T + I+  F     
Sbjct: 182 RIVRHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTE 241

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           +  +K + L+Q+L + D++K  IIF N+K  V  L   L +    V  + G++ Q+ R +
Sbjct: 242 R--EKTSALKQIL-ADDSVKKTIIFANRKDQVKRLYDYLRRH-HKVTMLSGDVAQQKRER 297

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  FK+G + ++VA+D+A RG+ + DV HV N+ +P+  ++Y+HRIGRTGRAG  G + 
Sbjct: 298 YLQRFKDGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSI 357

Query: 347 TLVAKEDIKHIDAIEKLIEKK 367
           + V++ D  ++ A+E+ I++K
Sbjct: 358 SFVSENDAFNLPALERHIDQK 378


>gi|37197585|dbj|BAC93424.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 441

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 215/368 (58%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P ++ A+ + GY +PT IQ + IP  L+  D+   A TGTGKTA+FVLP L  
Sbjct: 38  FADLDLDPNLLSAIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLPALQY 97

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+    R   P R LIL PTRELA QVAD      KN +L +  + GG+ ++     L  
Sbjct: 98  LQDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTSLNIFTITGGVQYQEHADILAT 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR++++    +     IE L++DEADRMLDMGF P +  +++   + +QT+
Sbjct: 158 TQDIVVATPGRLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTM 217

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  + ++  + + L +P  I+        + I   +    +    K ALL+ ++ 
Sbjct: 218 LFSATLEGKGVEGFTADLLNDPADIDAEPSRRERKKITQWYYRADSM-EHKLALLKDIIN 276

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +Q   +  I+F   ++ + +L   LE +  +   I G + Q  R   ++ F++G++ +++
Sbjct: 277 NQ--AERTIVFLKTRERLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNVLL 334

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+PDV HV NFD+P  A+ Y+HRIGRT RAG+ G A ++V   D   +D +
Sbjct: 335 ATDVAARGIDLPDVSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRV 394

Query: 361 EKLIEKKV 368
            + +++ +
Sbjct: 395 ARYVKEDI 402


>gi|22125187|ref|NP_668610.1| ATP-dependent RNA helicase SrmB [Yersinia pestis KIM 10]
 gi|45442294|ref|NP_993833.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51597216|ref|YP_071407.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis IP
           32953]
 gi|108808436|ref|YP_652352.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Antiqua]
 gi|108811359|ref|YP_647126.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Nepal516]
 gi|145598847|ref|YP_001162923.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Pestoides F]
 gi|149365400|ref|ZP_01887435.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125]
 gi|162420447|ref|YP_001607925.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Angola]
 gi|165925272|ref|ZP_02221104.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165937169|ref|ZP_02225734.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166008251|ref|ZP_02229149.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212404|ref|ZP_02238439.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399586|ref|ZP_02305110.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167421460|ref|ZP_02313213.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167423084|ref|ZP_02314837.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167470537|ref|ZP_02335241.1| ATP-dependent RNA helicase SrmB [Yersinia pestis FV-1]
 gi|186896313|ref|YP_001873425.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis PB1/+]
 gi|218929780|ref|YP_002347655.1| ATP-dependent RNA helicase SrmB [Yersinia pestis CO92]
 gi|229838271|ref|ZP_04458430.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229895533|ref|ZP_04510704.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|229898835|ref|ZP_04513980.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229901609|ref|ZP_04516731.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|270489798|ref|ZP_06206872.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294504499|ref|YP_003568561.1| ATP-dependent RNA helicase [Yersinia pestis Z176003]
 gi|21958051|gb|AAM84861.1|AE013731_6 ATP-dependent RNA helicase [Yersinia pestis KIM 10]
 gi|45437158|gb|AAS62710.1| ATP-dependent RNA helicase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590498|emb|CAH22138.1| ATP-dependent RNA helicase [Yersinia pseudotuberculosis IP 32953]
 gi|108775007|gb|ABG17526.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|108780349|gb|ABG14407.1| ATP-dependent RNA helicase [Yersinia pestis Antiqua]
 gi|115348391|emb|CAL21327.1| ATP-dependent RNA helicase [Yersinia pestis CO92]
 gi|145210543|gb|ABP39950.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides F]
 gi|149291813|gb|EDM41887.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125]
 gi|162353262|gb|ABX87210.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Angola]
 gi|165915032|gb|EDR33644.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165922879|gb|EDR40030.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992633|gb|EDR44934.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206335|gb|EDR50815.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166960949|gb|EDR56970.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167052090|gb|EDR63498.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057254|gb|EDR67000.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|186699339|gb|ACC89968.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229681538|gb|EEO77632.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|229688383|gb|EEO80454.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229694637|gb|EEO84684.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701339|gb|EEO89367.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|262362509|gb|ACY59230.1| ATP-dependent RNA helicase [Yersinia pestis D106004]
 gi|262366486|gb|ACY63043.1| ATP-dependent RNA helicase [Yersinia pestis D182038]
 gi|270338302|gb|EFA49079.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294354958|gb|ADE65299.1| ATP-dependent RNA helicase [Yersinia pestis Z176003]
 gi|320016083|gb|ADV99654.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 441

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 162/448 (36%), Positives = 239/448 (53%), Gaps = 27/448 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP L 
Sbjct: 5   NFSELDLDERLIDALRDKGYERPTAIQASAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K   L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKYTQLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ T GR+L +          +E L++DEADRMLDMGF   I+ I++   + +QT
Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQT 184

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+  E +++ +E  L  P  +E +      + I+  +         K ALL  LL
Sbjct: 185 LLFSATLEGEAIREFAERILNEPVELEADPSRRERKKIQQWYYRA-DDIKHKTALLCHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  K+ IIF   ++ V  L   L + G +   + G + Q  R + +    +G + ++
Sbjct: 244 KQPDVSKS-IIFVRTRERVHELVSWLREAGINAWFLEGEMVQAKRTEAVIRLGDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D  HI  
Sbjct: 303 VATDIASRGLDIDDISHVFNFDMPRTADVYLHRIGRTGRAGRKGVAISLVEAHD--HI-- 358

Query: 360 IEKLIEKKVDWLNGDLSS-LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
                      L G +   LN PL+   I   +  R  +  P +       KK  + +K 
Sbjct: 359 -----------LLGKIGRYLNEPLKPRVI---DELRPTSKAPSEKATGKPSKKVLAKRKE 404

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFR 446
               KES K  K++  ++  DA ++G R
Sbjct: 405 Q---KESSK-EKVKVKVRHRDAKNVGKR 428


>gi|325000518|ref|ZP_08121630.1| DEAD/DEAH box helicase domain protein [Pseudonocardia sp. P1]
          Length = 547

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 151/418 (36%), Positives = 231/418 (55%), Gaps = 30/418 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA+LG+ P++V A+ +   V+   IQ  T+PL L   DV G A+TGTGKT  F +PML  
Sbjct: 65  FAELGVRPEIVSALAENDIVRTFAIQELTLPLALDGEDVIGQARTGTGKTLGFGVPMLQR 124

Query: 61  --------TILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                       +G A  R   +P+ L++ PTREL  QVA +    GKN  + V  + GG
Sbjct: 125 ITPPGEQPAATAEGEAADRTKDVPQALVVVPTRELCVQVARDIAAAGKNLGVRVVAIYGG 184

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
             +E Q + L +G DV++ TPGR+LD   +  L++  ++ LV+DEAD MLD+GF+P ++ 
Sbjct: 185 RAYEPQLEALRKGVDVIVGTPGRLLDLAEQRHLVLGRVKALVLDEADEMLDLGFLPDVER 244

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQ 227
           I  ++P  R T+LFSATM   + ++S  FL  P   R E     S  E  +      +A 
Sbjct: 245 ILRMLPEQRHTMLFSATMPGPIVQLSRAFLTRPTHIRAEEADQGSIHERTKQLVYRAHAM 304

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
              K  L+ ++LQ++D   + +IF   K+    +   L ++GF+  A+HG++ Q +R + 
Sbjct: 305 --DKVELVTRVLQAKDRGLS-MIFTRTKRTAQRVADDLAERGFAAAAVHGDLGQGAREQA 361

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L  F+   + ++VA+D+AARG+D+  V HV N+  P  ++ Y+HRIGRTGRAGR G A T
Sbjct: 362 LRAFRAEKVDVLVATDVAARGIDVTGVTHVVNYQCPEDSKTYVHRIGRTGRAGREGVAVT 421

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           LV  ++I       KLI + ++        +  P+E    + H     +  IP  STG
Sbjct: 422 LVDWDEIPRW----KLISEDLNL------GMPEPVETYSTSDHLFTDLD--IPTDSTG 467


>gi|281351661|gb|EFB27245.1| hypothetical protein PANDA_013938 [Ailuropoda melanoleuca]
          Length = 940

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 260 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 319

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 320 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 375

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 376 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 435

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 436 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 495

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I
Sbjct: 496 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 554

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 555 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 611


>gi|194216767|ref|XP_001501051.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           [Equus caballus]
          Length = 935

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I
Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 549

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606


>gi|114669826|ref|XP_001147663.1| PREDICTED: DEAD box polypeptide 42 protein isoform 5 [Pan
           troglodytes]
 gi|114669828|ref|XP_001147738.1| PREDICTED: DEAD box polypeptide 42 protein isoform 6 [Pan
           troglodytes]
 gi|114669830|ref|XP_001147818.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 7 [Pan
           troglodytes]
 gi|114669832|ref|XP_001147880.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 8 [Pan
           troglodytes]
          Length = 938

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I
Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 549

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606


>gi|110638284|ref|YP_678493.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110280965|gb|ABG59151.1| possible ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 388

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 142/371 (38%), Positives = 219/371 (59%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLSP ++ A+    Y  P PIQ + IP +L+  D+ GIAQTG+GKTASFVLP+L
Sbjct: 9   MSFATLGLSPAILKALEKQFYNAPYPIQEQAIPAILKGKDILGIAQTGSGKTASFVLPIL 68

Query: 61  TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNK 117
            +L+ K   + R    L+L PTRELA QV   F+ +       +    + GG+    Q  
Sbjct: 69  QMLQTKPLGKNRHINALVLVPTRELAVQVGQVFQAFSNALPNKIKSLAVYGGVSINPQMI 128

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L+ G ++LI TPGR+LD  +   + ++++E+LV+DEAD+ML++GF   + NI  L+P  
Sbjct: 129 QLQ-GVEILIATPGRLLDLVDSKAVYLSDVEVLVLDEADKMLNLGFKEEMANIFKLLPQK 187

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT+  ++  ++E  L +P +IE+       + I+   +A   + ++K  LL+ 
Sbjct: 188 RQNLLFSATLGKDVDTITEFLLHDPVKIEIIAEEQNIDLIQQ--IAYAVEDARKGPLLRY 245

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++ Q  M   +IF +       +   L+       A+H    Q +R + L  FK G I 
Sbjct: 246 LIKEQK-MNQVLIFTSSVHRADAVVEKLKANNILAAALHSKKSQGARTEALKQFKAGNIH 304

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+DL +RG+DIP +  V N+++P   ++YIHRIGRTGRA   G A  L+++E+  H 
Sbjct: 305 VLVATDLMSRGIDIPFLPFVINYELPRSPKDYIHRIGRTGRAEASGVAINLISEEETHHF 364

Query: 358 DAIEKLIEKKV 368
             I+K + KKV
Sbjct: 365 SVIQKKMGKKV 375


>gi|315040958|ref|XP_003169856.1| ATP-dependent RNA helicase DBP2 [Arthroderma gypseum CBS 118893]
 gi|311345818|gb|EFR05021.1| ATP-dependent RNA helicase DBP2 [Arthroderma gypseum CBS 118893]
          Length = 558

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 214/373 (57%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ KPTPIQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 143 FDEAGFPQYVMSEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 202

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 203 INAQPLLAPGDG----PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQI 258

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 259 RDLTRGVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 318

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT ++SAT   ++++++ +FLQ+  ++ + +   +A       V   +++ K+  +++
Sbjct: 319 DRQTCMWSATWPKDVRQLANDFLQDYIQVYIGSQDLSANHRITQIVEVVSEFEKRDRMIK 378

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L +  +  K+ + IF   K+   ++   L + G+   +IHG+  Q  R  +L+ FK G 
Sbjct: 379 HLERIMEDKKSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 438

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+A+RG+D+ D+ HV N D PN +E+Y+HRIGRTGRAG +G A TL   E+ K
Sbjct: 439 SPIMVATDVASRGIDVRDITHVLNHDYPNNSEDYVHRIGRTGRAGANGTAITLFTTENAK 498

Query: 356 HI-DAIEKLIEKK 367
              D ++ L E K
Sbjct: 499 QARDLVKILTESK 511


>gi|296201782|ref|XP_002748184.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Callithrix jacchus]
          Length = 934

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I
Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 549

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606


>gi|258620667|ref|ZP_05715704.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
 gi|258623759|ref|ZP_05718717.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
 gi|262172593|ref|ZP_06040271.1| ATP-dependent RNA helicase RhlB [Vibrio mimicus MB-451]
 gi|258583956|gb|EEW08747.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
 gi|258587182|gb|EEW11894.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
 gi|261893669|gb|EEY39655.1| ATP-dependent RNA helicase RhlB [Vibrio mimicus MB-451]
          Length = 436

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 143/383 (37%), Positives = 219/383 (57%), Gaps = 11/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FAD GL P+V+  +   G++  TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADFGLHPQVIDGLEKKGFIYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            + T   +GRA  + PR +I+ PTRELA Q+ ++ E       L  AL  GG  ++ Q  
Sbjct: 71  LLTTPAAEGRAETQ-PRAIIMAPTRELAIQIYNDAEPLLATTGLKAALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G D+LI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R  +LFSAT++  +Q+++   + NP+ + V     T   I+      Y     K ALL
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELF--YPSNDHKMALL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L      V  + G++ Q+ R +IL  F +G 
Sbjct: 248 QTLVE-EEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   
Sbjct: 307 VDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAI 366

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
           ++ AIE  I+  +   + D S+L
Sbjct: 367 NLPAIESYIDHAIPTSDYDPSAL 389


>gi|73965187|ref|XP_537598.2| PREDICTED: similar to DEAD box polypeptide 42 protein isoform 1
           [Canis familiaris]
          Length = 696

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I
Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 549

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606


>gi|302815317|ref|XP_002989340.1| hypothetical protein SELMODRAFT_41331 [Selaginella moellendorffii]
 gi|300142918|gb|EFJ09614.1| hypothetical protein SELMODRAFT_41331 [Selaginella moellendorffii]
          Length = 653

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 145/393 (36%), Positives = 222/393 (56%), Gaps = 15/393 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +LGL   ++ A+   GY  PTPIQ + +P+VL   D+ GIA+TG+GKTA+FVLPM+  
Sbjct: 185 FKELGLDSLLMGAITKQGYENPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVH 244

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++    +   P  +I  PTRELA Q+ +   K+ K Y + V+ + GG+    Q K+L+
Sbjct: 245 IMDQEELGKGEGPIGVICAPTRELAQQIFNESRKFAKPYGIRVSGVFGGMSKLDQFKELK 304

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G ++++ TPGR++D      L M     LV+DEADRM D+GF P I++I   +   RQT
Sbjct: 305 AGCEIVVATPGRLIDMLKMKALTMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 364

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ ++   L  P R+         E +            K   +L +L Q
Sbjct: 365 LLFSATMPRRVETLAREVLSAPVRVTAGEVGRANEDVTQVAQIVATDADKLQWMLSKLPQ 424

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D   + ++F + K  V  L   L+  GF V A+HG+ DQ SR+ +L  FK G   ++V
Sbjct: 425 MVDA-GDVLVFASTKVRVEELEKHLQDSGFKVAALHGDKDQASRVDVLQGFKSGQFHVLV 483

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIKHIDA 359
           A+D+AARGLDI  +  V N+D     + ++HR+GRTGRAG + G A+TLVA+++ +    
Sbjct: 484 ATDVAARGLDIKSIKTVVNYDTAKDMDTHVHRVGRTGRAGDKEGVAYTLVAQKEARFAG- 542

Query: 360 IEKLIEKKVDWLNGDLSS-LNPPLEKIDIAQHN 391
                    D +NG +++  N P E +D+A  +
Sbjct: 543 ---------DLVNGFVAAGQNVPSELMDLAMKD 566


>gi|291537686|emb|CBL10798.1| Superfamily II DNA and RNA helicases [Roseburia intestinalis M50/1]
          Length = 530

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 217/368 (58%), Gaps = 8/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P+V+ A+ + G+ + TPIQ + IP+V+   DV G AQTGTGKTASF +P+L  
Sbjct: 6   FDQLDLYPQVLRAIAEMGFEEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGIPVLHK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           ++    + ++   +IL PTRELA QVAD   K  K  + + +  + GG     Q K L+ 
Sbjct: 66  VDPNNKKTQV---IILSPTRELAIQVADEIRKLAKYMHGVKILPVYGGQEISRQIKALKG 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180
           GA ++I TPGR++DH  R  +    +  +V+DEAD ML+MGF   I+ I   +P   RQT
Sbjct: 123 GAQIIIGTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEYIPEEGRQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +  +++ +  +   I+V     T   IE  +     +   K  +L +LL 
Sbjct: 183 VLFSATMPKPILDITKKYQHDAVTIKVVKKELTVPNIEQYYYDV--KRKDKIEVLTRLLD 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  K  ++FCN K+ V  L   L+ +G+    +HG++ Q  R +++  F+ G  ++++
Sbjct: 241 YYNP-KLSLVFCNTKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G+AFT V  +++  +  I
Sbjct: 300 ATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDI 359

Query: 361 EKLIEKKV 368
            +  + K+
Sbjct: 360 MRYCKTKI 367


>gi|207742162|ref|YP_002258554.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
 gi|206593550|emb|CAQ60477.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
          Length = 471

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 149/392 (38%), Positives = 222/392 (56%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P V+  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 16  FSTLALAPAVLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFALALLAQ 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    ++L PTRELA QVA    +  +   N+ V  L GG P   Q   LE 
Sbjct: 76  LDARRFDVQ---AMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEH 132

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH  RG L +  ++ LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 133 GAHVVVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPPERQTL 192

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S   L+NPK +++      ++  +  +  T  +      LL +  + 
Sbjct: 193 LFSATYPDGIAKLSRQILRNPKEVKLEERHDDSKIRQRFYEVTDDKRLHAVGLLLKHYRP 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+     FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 253 VSTLA----FCNTKQQCRDLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  +  IE
Sbjct: 309 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGNIE 368

Query: 362 KLIEKKVDWLN------GDLSSLNPPLEKIDI 387
           +++ ++V+W        G+ + L PP+E + I
Sbjct: 369 EVLGREVEWHRLDEIDAGNDAPLLPPMETLQI 400


>gi|150003861|ref|YP_001298605.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482]
 gi|254880913|ref|ZP_05253623.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA]
 gi|294775017|ref|ZP_06740546.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
 gi|319639922|ref|ZP_07994650.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A]
 gi|149932285|gb|ABR38983.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482]
 gi|254833706|gb|EET14015.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA]
 gi|294451061|gb|EFG19532.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
 gi|317388461|gb|EFV69312.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A]
          Length = 624

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 137/377 (36%), Positives = 226/377 (59%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+SP+++ A+ + GY  P P+Q + IP +L   +DV  +AQTGTGKTA+F LP++ 
Sbjct: 4   FEELGVSPEILKAIKEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLPLI- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
             +K   + R P+ LIL PTREL  Q+A +   Y K  + L +  + GG   E+Q + L+
Sbjct: 63  --QKVDVKHRAPQALILCPTRELCLQIAGDLNDYSKYIDGLKILPVYGGSSIESQIRMLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGR++D   R    +  I  +V+DEAD ML+MGF   I  I   VP  R T
Sbjct: 121 TGVHIIVATPGRLIDLIERKVAKLETITDVVMDEADEMLNMGFTDSINAILEKVPEDRNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSATM+ E+ ++++ +L + K I + T +  ++ + H     +A+   K A L+++  
Sbjct: 181 LMFSATMSPEISRIAKKYLHDAKEITIGTKNEGSKNVNHIAYLVHAK--DKYAALKRIAD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  +K    +   L + G++  ++HG + Q  R  ++  F++  +QL+V
Sbjct: 239 YYPQIY-GIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRHLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKTGISIAIINLREKGKMREI 357

Query: 361 EKLIEKKVDWLNGDLSS 377
           E++I KK  ++ G++ S
Sbjct: 358 ERIINKK--FIMGEMPS 372


>gi|182682666|ref|YP_001830826.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa M23]
 gi|182632776|gb|ACB93552.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23]
 gi|307578947|gb|ADN62916.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 544

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 138/375 (36%), Positives = 224/375 (59%), Gaps = 10/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F+   L P ++  +  AG+   TPIQ  T+P+ L   D+ G AQTGTGKT +F++ ++
Sbjct: 10  LNFSSFDLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVV 69

Query: 61  TILEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L      V      PR LIL PTRELA Q+ ++  K+G N  L  AL+ GG+ ++ Q 
Sbjct: 70  NRLLSSPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDRQR 129

Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L +GADV+I TPGR++D+  + +++ +   EI V+DEADRM D+GFI  I+ I   +P
Sbjct: 130 EMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLP 189

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
              +RQTLLFSAT++  + +++  ++  P+++   T S T   +       +    +K  
Sbjct: 190 ERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIY--FPAEEEKIP 247

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  LL   + M+  ++F N K  V  +  +L++ G+ V  + G++ QR R  +L+ F++
Sbjct: 248 LLLGLLSRNEGMRT-MVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQK 306

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +  
Sbjct: 307 GQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERY 366

Query: 354 IKHIDAIEKLIEKKV 368
              +  IE  IE+K+
Sbjct: 367 AMSLPDIEAYIEQKI 381


>gi|288935786|ref|YP_003439845.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
 gi|290509812|ref|ZP_06549183.1| ATP-independent RNA helicase DbpA [Klebsiella sp. 1_1_55]
 gi|288890495|gb|ADC58813.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
 gi|289779206|gb|EFD87203.1| ATP-independent RNA helicase DbpA [Klebsiella sp. 1_1_55]
          Length = 457

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 142/382 (37%), Positives = 219/382 (57%), Gaps = 9/382 (2%)

Query: 3   FADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L + P    A L + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLTVLPAAQLANLNELGYLSMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++  R   +   +L+L PTRELA QVA    +  +   N+ + +L GG PF AQ   L+
Sbjct: 64  HIDPARFETQ---SLVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ ++ LV+DEADRMLDMGF   I  +    P  RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +  +S    +NP+ IE++T  +    IE  F         K ALLQ+LL 
Sbjct: 181 LLFSATWPAAIAAISGRVQRNPQTIEIDTVDAL-PAIEQQFFEV--SRHGKIALLQRLL- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN K++   +C +L   G S  ++HG+++QR R + L  F  G+++++V
Sbjct: 237 SQHQPASCVVFCNTKRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +    +
Sbjct: 297 ATDVAARGLDIKSLALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQRATIL 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPL 382
             +++  ++WL     +   PL
Sbjct: 357 ADMLQLSLNWLPAPTGNTIAPL 378


>gi|109116835|ref|XP_001116381.1| PREDICTED: ATP-dependent RNA helicase DDX42-like isoform 5 [Macaca
           mulatta]
 gi|109116837|ref|XP_001116390.1| PREDICTED: ATP-dependent RNA helicase DDX42-like isoform 6 [Macaca
           mulatta]
          Length = 937

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I
Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 549

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606


>gi|328875962|gb|EGG24326.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 806

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 146/395 (36%), Positives = 219/395 (55%), Gaps = 20/395 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  +G    ++ ++   GY  PT IQ + +P+ L   D+  IA+TG+GKTASF+ P +  
Sbjct: 333 FGHIGFDDIMIQSIQKQGYETPTSIQKQAVPIALSGRDLIAIAKTGSGKTASFIWPAIVH 392

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LEKG      P  + + PTRELA Q+    +K+ K Y +   ++ GG+    Q 
Sbjct: 393 IMNQPYLEKGDG----PIAVFVSPTRELAHQIYMETQKFAKPYKIKTTVVYGGVTKLLQC 448

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++L+ G ++L+ TPGRI+D        MN    LV+DEADRM DMGF P +Q+I   +  
Sbjct: 449 RELKAGCEILVGTPGRIIDMIKLKATKMNRCTFLVLDEADRMFDMGFEPQVQSIIGQIRP 508

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT  + +++++ N L +P RI +    S  + I+  FV       +K   L 
Sbjct: 509 DRQTLLFSATFPNAIEQLARNILTDPIRISIGNSGSANQDIKQ-FVKVLPSDGEKWGWLT 567

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + L    T  N +IF + K  V  L  +L K GF    IHG+ DQ+ R +I+S FK GT+
Sbjct: 568 ETLPLMLTEGNVVIFVSTKVAVEQLSTNLLKFGFLADGIHGDKDQQERTQIISRFKSGTV 627

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLDI  + +V NFDV    +++ HR+GRTGRAG  G A TL+  +D   
Sbjct: 628 PILVATDVAARGLDISLIKNVVNFDVSRDIDSHTHRVGRTGRAGTQGTAHTLITPKDTHF 687

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
              + + +E+         ++ N P E I +A +N
Sbjct: 688 SADLVRHLEE---------ANQNVPPELITVAMNN 713


>gi|311266965|ref|XP_003131337.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
           DDX42-like [Sus scrofa]
          Length = 941

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I
Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 549

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606


>gi|133777033|gb|AAH43036.4| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Mus musculus]
          Length = 810

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 212/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 136 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 195

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 196 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 251

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 252 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 311

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 312 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 371

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L  +L+++G ++  +HG++DQ  R K++S+FK+  I
Sbjct: 372 RLVEFTSS-GSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 430

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 431 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 487


>gi|126340121|ref|XP_001371236.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 542

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 141/370 (38%), Positives = 218/370 (58%), Gaps = 13/370 (3%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+  PT IQI+ IP+ L   D+ G+A+TG+GKT +F LP+L 
Sbjct: 110 FKDLGVT-DVLCDACDQLGWKTPTKIQIEAIPMALDGRDIIGLAETGSGKTGAFALPILN 168

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     R      L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 169 ALLDTPQRFF---ALVLTPTRELAFQISEQFEALGSSIGVECAVIVGGIDSMSQSLALAK 225

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V+I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  L+P  R+T
Sbjct: 226 KPHVIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKLIPRDRKT 285

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQL 238
            LFSATMT ++QK+    L+NP +  V++   T E ++  + F+ +  + S    +L +L
Sbjct: 286 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDSYLVYILNEL 345

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +     + ++FC+   N       L   GF+   +HG + Q  R+  L+ FK     +
Sbjct: 346 AGN-----SFMVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSI 400

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GK+ T V + D++   
Sbjct: 401 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELYQ 460

Query: 359 AIEKLIEKKV 368
            IE LI KK+
Sbjct: 461 RIEHLIGKKL 470


>gi|224134991|ref|XP_002327540.1| predicted protein [Populus trichocarpa]
 gi|222836094|gb|EEE74515.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 143/425 (33%), Positives = 226/425 (53%), Gaps = 31/425 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+G    V+  +  AG+ +PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP +  
Sbjct: 93  FHDVGFPDYVLQEISKAGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIIH 152

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L  G      P  L+L PTRELA Q+     K+G +  +    + GG+P   Q 
Sbjct: 153 VNAQPFLAPGDG----PIVLVLAPTRELAVQIQQEAAKFGASSRIKNTCIYGGVPKGPQV 208

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L++G +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 209 RDLQKGVEIVIATPGRLIDMMESHHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 268

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHC-FVATYAQYSKKCA 233
            RQTL +SAT   E+++++   L NP ++ + +P   A     +H   V+   +Y+K   
Sbjct: 269 DRQTLYWSATWPKEVEQLARQSLYNPYKVIIGSPDLKANHAIRQHVDIVSENQKYNKLVK 328

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL+ ++     +    IF + KK    +   L   G+   +IHG+  Q  R  +LS FK 
Sbjct: 329 LLEDIMDGSRIL----IFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA 384

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +M A+D+AARGLD+ DV +V N+D P   E+Y+HRIGRTGRAG  G A+T     +
Sbjct: 385 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAGN 444

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            +    +  ++E+    ++ +L+++              AR   P+     GF  R + Y
Sbjct: 445 ARFAKELVTILEEAGQKVSPELTAM--------------ARGAPPLLSGHGGFRDRGRGY 490

Query: 414 SSQKS 418
           S  +S
Sbjct: 491 SGGRS 495


>gi|160884579|ref|ZP_02065582.1| hypothetical protein BACOVA_02566 [Bacteroides ovatus ATCC 8483]
 gi|237718558|ref|ZP_04549039.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4]
 gi|260174903|ref|ZP_05761315.1| ATP-dependent RNA helicase [Bacteroides sp. D2]
 gi|299145716|ref|ZP_07038784.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_23]
 gi|315923146|ref|ZP_07919386.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156110318|gb|EDO12063.1| hypothetical protein BACOVA_02566 [Bacteroides ovatus ATCC 8483]
 gi|229452018|gb|EEO57809.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4]
 gi|298516207|gb|EFI40088.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_23]
 gi|313697021|gb|EFS33856.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 422

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/371 (36%), Positives = 219/371 (59%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ + IP++L+  D+  +AQTGTGKTA+F+LP+L
Sbjct: 1   MKFSELQLNANVLEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             L +G+        +I+ PTRELA Q+    E +     ++   + GG   I FE Q K
Sbjct: 61  NKLSEGKHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIAKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++   L NP  I++       + I+  +V    Q   K  +++ 
Sbjct: 181 RQTIMFSATMPAKIQQLANTILNNPSEIKLAVSKPAEKIIQAAYVCYENQ---KLGIIRS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   +   +  I+F + K  V  +  +L+    +V  +H +++Q  R  ++  FK G I 
Sbjct: 238 LFMDE-VPERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V NFDVP+ +E+Y+HRIGRT RA   G A T +++++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQSNF 356

Query: 358 DAIEKLIEKKV 368
            +IE  +EK++
Sbjct: 357 KSIENFLEKEI 367


>gi|161528690|ref|YP_001582516.1| DEAD/DEAH box helicase domain-containing protein [Nitrosopumilus
           maritimus SCM1]
 gi|160339991|gb|ABX13078.1| DEAD/DEAH box helicase domain protein [Nitrosopumilus maritimus
           SCM1]
          Length = 440

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 138/374 (36%), Positives = 212/374 (56%), Gaps = 8/374 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL   ++  + D G+ +  PIQ   IP++L   DV G A TG+GKTA+F L ML  
Sbjct: 4   FQELGLKEDILKGLNDLGFEEAFPIQEAVIPVLLTGRDVVGQAHTGSGKTAAFSLSMLQE 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++         + LI+ PTRELA Q+ D  +K+GK   + VA + GG     Q   LERG
Sbjct: 64  IQPKNG----IQGLIMAPTRELAMQITDEIKKFGKYTGIKVATVYGGQGMGLQLDALERG 119

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++++ TPGR++DH  RG + + ++  +V+DEAD MLDMGFI  I  I  L P  R   L
Sbjct: 120 VEIVVATPGRLIDHLKRGSIELRDVTHIVLDEADTMLDMGFIDDIGFILDLAPEDRVMSL 179

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+ ++SE +L NPK+  ++    + E I+  ++    +   K   L   ++  
Sbjct: 180 FSATMPTEILRLSEEYLNNPKQFLLDADDLSGEGIDQSYLVI--KDRDKFKYLIDFIKP- 236

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T    I+FC+ K    ++   L ++ F   AI G++ Q  R + +  F+ G   ++VA+
Sbjct: 237 -TKGQAIVFCSTKYRTRDVAKFLHQEKFDAVAIEGDMSQHRREQSMGKFRSGKADILVAT 295

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RG+D+P V  V N+DVPN+   Y HRIGRT RAG  GKA T V+   +   + I++
Sbjct: 296 DVASRGIDVPRVELVINYDVPNQEMAYFHRIGRTARAGAKGKAVTFVSYSSVGDWNLIKR 355

Query: 363 LIEKKVDWLNGDLS 376
            I+  +  LN ++ 
Sbjct: 356 QIKVPIKDLNEEMG 369


>gi|327403398|ref|YP_004344236.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327318906|gb|AEA43398.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 443

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 142/396 (35%), Positives = 221/396 (55%), Gaps = 8/396 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL +   ++ A+ + GY  PT IQ     +++   DV G+AQTGTGKT +++LP L
Sbjct: 1   MTFHDLNIKKPILTALDELGYTTPTTIQSAGFSVMMSGKDVIGLAQTGTGKTLAYLLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++ +  +     P+ LI+ PTREL  QV    EK   + NL V  + GG     Q   + 
Sbjct: 61  SLWKFSKEP--HPQILIIVPTRELVVQVVREVEKLTPHMNLAVGGVYGGANINTQASMVL 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVL+ TPGRI D    G L + + + +VIDE D  L +GF P +  I  L+P  RQ 
Sbjct: 119 QGLDVLVGTPGRIFDLTANGSLQLKHAKKVVIDEVDETLSLGFRPQLMRIFDLLPEKRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+++E++     F +NP R+E     +  E I+   +A    ++ K  LL+ +L+
Sbjct: 179 LLFSATLSEEVEGFLGVFFENPIRVEAARVGTPLEKIKQEAIAV-PNFTSKVNLLKHMLE 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQ-GFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   M   ++F + +     L   LE   G  +  IH +  Q  R   +++F+ G  +++
Sbjct: 238 TNQDMSRVLVFVSSRVFADKLYEELEPVFGVELGVIHSSKAQNFRFNAVNHFQNGIYRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+DL ARG+D+ DV HVFNFD+P+  ENYIHRIGRTGR  + G A + + + D +    
Sbjct: 298 IATDLIARGIDVTDVTHVFNFDIPDNQENYIHRIGRTGRQDKEGHAISFLTERDHEQFVK 357

Query: 360 IEKLIEKKVDWL----NGDLSSLNPPLEKIDIAQHN 391
           IE+ ++KKV+        +LS++    EKI ++  N
Sbjct: 358 IEEFMDKKVEIQAFPEEAELSTVILEFEKIQVSMKN 393


>gi|71280589|ref|YP_270076.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71146329|gb|AAZ26802.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 432

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 139/367 (37%), Positives = 211/367 (57%), Gaps = 15/367 (4%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +LGL   ++  + +  Y +PTPIQ + IP V    D+   A TG+GKTA+F LPML  L 
Sbjct: 12  ELGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQKLR 71

Query: 65  KG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQN 116
           +        ++      L+L PTRELA QVAD+ + Y  ++N  +  L   GG+    Q 
Sbjct: 72  EDISSGSKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVNIQM 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G D+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  + +L P 
Sbjct: 132 LALRGGVDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELTALLALTPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKCALL 235
            +QTLLFSAT  +++  +++  L NP  IE+   S+ A T ++  F     +   K A+L
Sbjct: 192 KKQTLLFSATFPEQVTTLTQELLNNP--IEIQLQSADASTLVQRVFTVNKGE---KTAVL 246

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+Q Q+  +  +IF N K +  +L   L K+G +    HG+  Q  R ++L  FK G 
Sbjct: 247 AHLIQ-QEQWRQALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFKAGD 305

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I++++A+D+AARGLDI  +  V NF++P    +Y+HRIGR+GRAG  G A +L+  ED  
Sbjct: 306 IEVLIATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISLIDHEDYH 365

Query: 356 HIDAIEK 362
           H   IEK
Sbjct: 366 HFSVIEK 372


>gi|302853426|ref|XP_002958228.1| hypothetical protein VOLCADRAFT_77867 [Volvox carteri f.
           nagariensis]
 gi|300256416|gb|EFJ40682.1| hypothetical protein VOLCADRAFT_77867 [Volvox carteri f.
           nagariensis]
          Length = 574

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 220/387 (56%), Gaps = 27/387 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + GL   ++ A+   GY KP+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPML+ 
Sbjct: 157 WEESGLPSLLIKAIDRVGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSY 216

Query: 63  LEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + +            P  ++L PTRELA Q+ +   K     N  +A ++GG   E Q  
Sbjct: 217 IMRQPPMTEENEADGPYAVVLAPTRELAQQIEEETHKLAYYTNYRIASVVGGQSIEEQGA 276

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL +G +++I TPGR+LD  +R   ++N    +V+DEADRM+D+GF P +  +   +P +
Sbjct: 277 KLRKGCEIVIATPGRLLDCIDRHYAVLNQCNYVVLDEADRMIDLGFEPQVIGVLDAMPSS 336

Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EH 219
                            R T +FSATM   ++++++ +L+ P  + + +     + + + 
Sbjct: 337 FLKPDEDGAVLEANRTYRTTYMFSATMPPAVERLAKKYLRRPVVVVIGSAGKVTDNVTQR 396

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
            FV    + ++K  +L+Q ++S D  K  I+F N ++   N+   LE+ G+    +HG  
Sbjct: 397 VFVV---KENEKPRVLEQEMESVDE-KRVIVFVNTQRQCDNVHRHLEELGYRCTILHGGK 452

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q  R   +  F++GT   ++A+D+A RG+D+PDV  V N+D+PN  ENY HRIGRTGRA
Sbjct: 453 TQDQREAGIKGFRDGTYNCLIATDVAGRGIDVPDVALVINYDMPNNIENYTHRIGRTGRA 512

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           G+ G A T +   D      ++KL+E+
Sbjct: 513 GKKGVAVTFLTLGDTGVFYDLKKLLEE 539


>gi|91793927|ref|YP_563578.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91715929|gb|ABE55855.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 422

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 138/354 (38%), Positives = 205/354 (57%), Gaps = 8/354 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS ++  AV + GY   TP+Q   IP+ L   DV   A+TGTGKTA+F LP+L
Sbjct: 1   MPFNALGLSSQLQDAVKECGYDATTPVQQAVIPVALLGQDVLASAETGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L +   +   P    R L++ PTRELA Q+  NF  Y +   L    + GG     Q 
Sbjct: 61  MNLSQIDTQTLTPEQRLRALVMTPTRELAIQIEQNFLSYSRYLELNSLAVYGGASINPQR 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L +G DVL+ TPGR+ D   + +L ++++  LVIDEADRMLD+GF+  I+ +  LV  
Sbjct: 121 KALAQGVDVLVATPGRLFDIIGQHELDLSHVTHLVIDEADRMLDLGFVKDIEKVQRLVAR 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT +DE+Q +++  L  P    + + S+TA T+            +K  LL 
Sbjct: 181 QRQTMMFSATFSDEVQVLAQKMLNQPAIFHLAS-STTASTVSQEVY--LVDKRRKAELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L+  ++  +  ++F + K+   +L   L   G      HG+  Q +R K L  FK+G +
Sbjct: 238 ELI-GRNNWQQVMVFTSTKETAEHLLSELTLDGLKAAVFHGDKSQGARNKALEEFKQGQL 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           ++++A+DLAARGLDI  +  V NF++P   E+Y+HR+GRTGRAG  G A + V+
Sbjct: 297 RILIATDLAARGLDIQALPLVINFELPPEPEDYVHRVGRTGRAGMAGHAISFVS 350


>gi|26340024|dbj|BAC33675.1| unnamed protein product [Mus musculus]
          Length = 810

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 212/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 136 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 195

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 196 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 251

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 252 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 311

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 312 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 371

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L  +L+++G ++  +HG++DQ  R K++S+FK+  I
Sbjct: 372 RLVEFTSS-GSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 430

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 431 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 487


>gi|327302680|ref|XP_003236032.1| ATP-dependent RNA helicase DBP2 [Trichophyton rubrum CBS 118892]
 gi|326461374|gb|EGD86827.1| ATP-dependent RNA helicase DBP2 [Trichophyton rubrum CBS 118892]
          Length = 538

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 214/373 (57%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ KPTPIQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 124 FDEAGFPQYVMSEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 183

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 184 INAQPLLAPGDG----PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQI 239

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 240 RDLTRGVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 299

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT ++SAT   ++++++ +FLQ+  ++ + +   +A       V   +++ K+  +++
Sbjct: 300 DRQTCMWSATWPKDVRQLANDFLQDYIQVYIGSQDLSANHRITQIVEVVSEFEKRDRMIK 359

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L +  +  K+ + IF   K+   ++   L + G+   +IHG+  Q  R  +L+ FK G 
Sbjct: 360 HLERIMEDKKSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 419

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+A+RG+D+ D+ HV N D PN +E+Y+HRIGRTGRAG +G A TL   E+ K
Sbjct: 420 SPIMVATDVASRGIDVRDITHVLNHDYPNNSEDYVHRIGRTGRAGANGTAITLFTTENAK 479

Query: 356 HI-DAIEKLIEKK 367
              D ++ L E K
Sbjct: 480 QARDLVKILTESK 492


>gi|117620754|ref|YP_854622.1| ATP-dependent RNA helicase RhlB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|189040024|sp|A0KEG9|RHLB_AERHH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|117562161|gb|ABK39109.1| ATP-dependent RNA helicase RhlB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 429

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 144/374 (38%), Positives = 227/374 (60%), Gaps = 13/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA +GL P+V+  +   G+   TPIQ  ++PL+++ HD+ G AQTGTGKT +F+      
Sbjct: 11  FAQMGLEPEVLAGLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTLAFLAATFNY 70

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L      K R  +  PR +I+ PTRELA Q+ ++ E    +  L + L  GG  ++ Q  
Sbjct: 71  LLTHPLTKPRL-INQPRAIIMAPTRELAVQIYNDAESMSASTGLKLGLAYGGEGYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
            LE+G D+LI T GRI+D+F    + ++NI+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLEQGVDILIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFDLGFIKDIRFLFRRMPPA 189

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234
             R ++LFSAT++  +Q+++   + +P+ +++     T   I E  F   Y     K  L
Sbjct: 190 TERLSMLFSATLSLRVQELAYEHMNHPEHVQIEPEQMTGVRIKEELF---YPSNEDKMLL 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L++ +   K  I+F N K    ++   LE  G  V  + G++ Q+ RMKIL +F +G
Sbjct: 247 LLSLMEEEWPEK-AIVFANTKHVCEDVHAWLENDGHRVGLLTGDVPQKKRMKILEDFTKG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           T+ ++VA+D+AARGL IPDV HVFN+D+P+ AE+Y+HRIGRTGRAG+ G + +L  ++  
Sbjct: 306 TVDILVATDVAARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKSGHSISLACEDYA 365

Query: 355 KHIDAIEKLIEKKV 368
            ++ AIE+ I   +
Sbjct: 366 FNLPAIEEYIHHPI 379


>gi|85859652|ref|YP_461854.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
 gi|85722743|gb|ABC77686.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
          Length = 413

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 131/372 (35%), Positives = 220/372 (59%), Gaps = 6/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  +S  +   +   G+ +PT IQ K+IP +++  DV  IAQTGTGKTA+F +P++
Sbjct: 1   MKFENYTISEAIKQNLAQLGFRRPTDIQFKSIPSIMKGEDVLAIAQTGTGKTAAFAIPLI 60

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +  EK   RV   + ++L PTRELA Q+ + F    K+  +    LIGG+  + Q +K
Sbjct: 61  DRIHREKSSKRVFGIKCIVLVPTRELAMQIGEVFAGLAKHTRVKTFPLIGGVEQDEQIRK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+LI TPGR+ D  ++G + ++ IE LV+DEAD MLD+GFI  I+ +  ++    
Sbjct: 121 LQDGIDILIATPGRMFDLIHQGHIRLDRIETLVLDEADHMLDLGFIEDIKFVKRMLHKKH 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPK-RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL FSAT+  E++K++ + ++    RI+++     +  + H  +  + +   K   L++
Sbjct: 181 QTLFFSATINPEIKKLAFSQVKGTAIRIQISPEDPVSANVTHAVM--FVEMDDKRFFLER 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L+     K  I+F   +     +  ++E+ G     IHG  DQ  R  ++  FKEG   
Sbjct: 239 FLKENQESKV-IVFVRTRIRAERVARAMERVGLHSLTIHGEKDQAERTSVMRKFKEGECN 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L++A+D++ARG+DIPDV +V N+D+P +AENY+HR+GRTGR    G A +  + ++   +
Sbjct: 298 LLIATDVSARGIDIPDVNYVINYDLPEKAENYVHRVGRTGRGDNKGIALSFCSSDEKMRL 357

Query: 358 DAIEKLIEKKVD 369
             I++ + K+++
Sbjct: 358 QEIQQFLNKEIE 369


>gi|146329072|ref|YP_001209762.1| ATP-dependent rna helicase Rhl [Dichelobacter nodosus VCS1703A]
 gi|146232542|gb|ABQ13520.1| ATP-dependent rna helicase Rhl [Dichelobacter nodosus VCS1703A]
          Length = 432

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 139/371 (37%), Positives = 216/371 (58%), Gaps = 8/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   ++ A+ D  + K TPIQ +T+PL L  +DV GIAQTGTGKTA+F+L ++  
Sbjct: 11  FTDFPIHSALLEALEDIHFTKTTPIQAQTLPLTLAGYDVMGIAQTGTGKTAAFLLSLMHY 70

Query: 63  LEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L       + + P  ++L PTRELA Q+    +  G    L    + GG   E Q K  +
Sbjct: 71  LMTNPVHPKAKGPWAIVLAPTRELAIQIKKEMDLLGAYTGLVSLAIYGGTSIEHQKKLFQ 130

Query: 121 R-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FT 177
               DV+I TPGRI+D F +    + NIE+ V+DEADRM D+GFI  ++ +   +P  + 
Sbjct: 131 ACNVDVIIGTPGRIIDLFKQKVFRLKNIEVCVLDEADRMFDLGFIDDVRYLLRQMPPAYE 190

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R  LLFSATM  ++Q+++      PK + + +  +TA  I H    T A++ K   LL  
Sbjct: 191 RLNLLFSATMPQKVQELAYEHFNAPKVVAIESQQTTANNITHYLYHT-AKHEKTPLLLG- 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L +++  +  +IF N K ++  L   L   G+   A+ G++ Q+ R +I+ +F+EGT+ 
Sbjct: 249 -LFARERPERSMIFLNTKHDLERLSLVLTANGYHNAALSGDVAQKKREQIIRDFQEGTVN 307

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+ I  + HVFN+D+P  AE+Y+HRIGRT RAG  G A +   +E +  +
Sbjct: 308 IVVATDVAARGIHIDGITHVFNYDLPQIAEDYVHRIGRTARAGASGTAISFACEEYVYSL 367

Query: 358 DAIEKLIEKKV 368
             IE  + +K+
Sbjct: 368 PEIEHFLGEKI 378


>gi|304311852|ref|YP_003811450.1| Superfamily II DNA and RNA helicases [gamma proteobacterium HdN1]
 gi|301797585|emb|CBL45806.1| Superfamily II DNA and RNA helicases [gamma proteobacterium HdN1]
          Length = 458

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 140/370 (37%), Positives = 214/370 (57%), Gaps = 8/370 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA L L P +V  +   GY + TPIQ + +P +L   DV   ++TG+GKTA+F + +LT
Sbjct: 5   DFASLLLPPHLVENLRGLGYSQMTPIQAQALPPILDGADVIAQSKTGSGKTAAFGIGVLT 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L     R    + L+L PTRELA QVA    +  ++  N+ +  L GG     Q   LE
Sbjct: 65  SLNP---RFFGTQALVLCPTRELADQVAKELRRLARSLQNIKILTLCGGTAIGPQFASLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+  H ++G L +  ++ LV+DEADRMLDMGF   I  I   +P  RQT
Sbjct: 122 HGAHIIVGTPGRVTKHLDKGSLDLQGLKTLVLDEADRMLDMGFYDQIAEIARFIPKRRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT T  ++++S NF  NP  I V +  + +E  ++ +   + Q  +  + L +  +
Sbjct: 182 LLFSATYTPAIRELSRNFQSNPVEITVESVHADSEIEQYFYEVDHKQRRRALSALLKNFK 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++FCN K+    +  +L  QGF    +HG+++QR R  +L  F   +   +V
Sbjct: 242 PE----SAVLFCNTKQLCDEVADALNAQGFYAQTLHGDMEQRDRDLVLLKFSNRSCPYLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+  V N DV    + +IHRIGRTGRAG+ G A +L +  +++  +AI
Sbjct: 298 ATDVAARGLDIKDLAAVVNVDVAFDPDVHIHRIGRTGRAGQKGLALSLCSPAEVQRANAI 357

Query: 361 EKLIEKKVDW 370
           E L+ + + W
Sbjct: 358 ETLLGRPLHW 367


>gi|121702529|ref|XP_001269529.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1]
 gi|143462228|sp|A1CR32|RRP3_ASPCL RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|119397672|gb|EAW08103.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1]
          Length = 473

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 139/372 (37%), Positives = 217/372 (58%), Gaps = 14/372 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+  ++  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 55  FKDLGIIDQLCEACATMGYKAPTPIQAESIPLALQDRDLIGLAETGSGKTAAFALPIL-- 112

Query: 63  LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +A +  P++   L+L PTRELA Q++ +FE  G   N+  A+++GG+   +Q+  L
Sbjct: 113 ----QALMDKPQSFFGLVLAPTRELAFQISQSFEALGSTINVRCAVIVGGMDMVSQSIAL 168

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +++ TPGR+LDH    K   +  ++ LV+DEADR+LDM F P +  I  ++P  R
Sbjct: 169 GKKPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKILPRER 228

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +T LFSATM+ +++ +    L NP R+ V++    T  T+   +   +  +  K   L  
Sbjct: 229 RTFLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQSY--RFIPHKHKDIYLVY 286

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL ++   ++ IIF         +   L   GF    +HG + Q SR+  L  F+  +  
Sbjct: 287 LL-NEFVGQSAIIFTRTVHETQRISFLLRALGFGAIPLHGQLSQSSRLGALGKFRSRSRD 345

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIP V  V NFD+P  ++ Y+HR+GRT RAG+ G A + V + D++  
Sbjct: 346 ILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIW 405

Query: 358 DAIEKLIEKKVD 369
             IE  + KK+D
Sbjct: 406 LRIEGALGKKLD 417


>gi|153940796|ref|YP_001391035.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum F str.
           Langeland]
 gi|152936692|gb|ABS42190.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum F str.
           Langeland]
 gi|295319091|gb|ADF99468.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum F str.
           230613]
          Length = 481

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 131/386 (33%), Positives = 229/386 (59%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  LS +++ ++   GY  P+ +Q + IPL+L+  D+   ++TG+GKTA+F +P  
Sbjct: 4   LTFENYKLSDEILKSLGKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIP-- 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + EK     + P+ L+L PTRELA Q+ +          L    + G  P   Q ++L+
Sbjct: 62  -VCEKLELEEKDPQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRELK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR LDH  R  L +  I+  V+DEAD ML+MGFI  ++ +   +P  R T
Sbjct: 121 QRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRVT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ ++++ + + ++ NP+ I +N  + T +TI  C+     +   K +LLQ+++ 
Sbjct: 181 MLFSATIPEKIENLCKKYMNNPQNININPENITTDTINQCYYE--VEDKDKFSLLQKII- 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++ + N IIFCN ++ V  +  +++K+G +   +HG ++Q+ R++ +  FKEG  Q +V
Sbjct: 238 YKEVVDNSIIFCNTREKVDEVLKNMKKKGLNAVGLHGGMEQKDRLETMKKFKEGEFQFLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ I ++ HV N+++P   E+Y+HRIGRTGRAG+ G A T +    ++ +  I
Sbjct: 298 CTDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFLRDI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKID 386
           E  IEK++           P LE++D
Sbjct: 358 EDYIEKEIP------KRKEPSLEEVD 377


>gi|329769092|ref|ZP_08260513.1| hypothetical protein HMPREF0433_00277 [Gemella sanguinis M325]
 gi|328839438|gb|EGF89015.1| hypothetical protein HMPREF0433_00277 [Gemella sanguinis M325]
          Length = 486

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 138/359 (38%), Positives = 217/359 (60%), Gaps = 7/359 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG+S +VV ++    +  PT IQ +TIP V    D+   AQTG+GKT +F +P++ I
Sbjct: 4   FEELGVSREVVESLSKMNFQSPTGIQTETIPYVFSGIDILAQAQTGSGKTGAFGIPIVDI 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    R    ++L+L PTRELA QV +      +   L V+++ GG   E Q + L++ 
Sbjct: 64  VK----RSEDLQSLVLAPTRELAQQVGEQLRLMARAKGLKVSIIFGGTSIERQIQDLKKR 119

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++DH NR  L ++ +  LV+DEAD ML+MGFI  ++ I S +    QTLL
Sbjct: 120 PQIVVGTPGRVIDHINRRTLKLDKLTHLVLDEADEMLNMGFIEDVRFILSKITSNHQTLL 179

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   + ++S++F+++ K I+  +       I+    AT A+ ++K   L   L  Q
Sbjct: 180 FSATMPKTIMELSKDFMKDYKLIKTMSDEDLNPDIKEY--ATIARENEKLETLVGFLDVQ 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     I+F   K+ V  L  +L  +G+    +HG+I Q  R++IL  FK  ++Q++VA+
Sbjct: 238 NP-NLAIVFGRTKRRVDELSSALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQILVAT 296

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           D+AARG+DI DV HV+NFD+P   E+Y HRIGRTGRAG+ G A T +   ++ ++  IE
Sbjct: 297 DVAARGIDISDVTHVYNFDIPQDTESYTHRIGRTGRAGKSGVAVTFLNPIEMPYLKDIE 355


>gi|227485114|ref|ZP_03915430.1| possible ATP-dependent RNA helicase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236947|gb|EEI86962.1| possible ATP-dependent RNA helicase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 550

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 144/365 (39%), Positives = 219/365 (60%), Gaps = 12/365 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +L +S + + A+ D G+  P+PIQ +TIP +L   DV G AQTGTGKTA+F +P  
Sbjct: 15  VEFKELYISEETLRAIADMGFKSPSPIQEETIPPLLDGKDVIGQAQTGTGKTAAFAIP-- 72

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117
            I+EK  A   + + L+L PTREL  QVA    N  KY  +  + +  + GG     Q K
Sbjct: 73  -IIEKIEAN-GLTQALVLCPTRELCIQVAKEIGNLAKY--HTGIKILSVYGGTQIVKQIK 128

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G ++++ TPGR++D   R  L ++N++I+V+DEAD M DMGF   ++ I       
Sbjct: 129 ALKKGVEIVVGTPGRLMDLMRRRVLKLDNLKIVVLDEADEMFDMGFRDDMKFILDATNDD 188

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT  FSATM  E+ + S+ + +NP  I++     T   I+  F+    + + K   L +
Sbjct: 189 RQTCFFSATMGKEISEFSKIYQKNPVTIKIKAKELTVNKIDQHFIKL--KEADKEETLTR 246

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+     +  IIFCN K+ V  L  SL K+ + V  +HG++ Q  R  ++  F+  TI 
Sbjct: 247 LLEINKP-RLAIIFCNTKRKVDKLVESLSKKSYLVDGLHGDLKQTQRDIVMKKFRNNTID 305

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+ DV  V N+D+P   E Y+HRIGRT RAGR G +++L++  D + +
Sbjct: 306 ILVATDVAARGLDVDDVDMVINYDLPQLDEYYVHRIGRTARAGRSGLSYSLISGRDNERL 365

Query: 358 DAIEK 362
            AIEK
Sbjct: 366 KAIEK 370


>gi|213410545|ref|XP_002176042.1| ATP-dependent rRNA helicase rrp3 [Schizosaccharomyces japonicus
           yFS275]
 gi|212004089|gb|EEB09749.1| ATP-dependent rRNA helicase rrp3 [Schizosaccharomyces japonicus
           yFS275]
          Length = 461

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 140/371 (37%), Positives = 220/371 (59%), Gaps = 13/371 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG+  ++  A     +  P+ IQ + IP  L++ D+ G+AQTG+GKTA+F +P++  
Sbjct: 44  FKELGVIDEICEACEKLNFKAPSAIQKEAIPAALKQQDIIGLAQTGSGKTAAFAIPVIQA 103

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          ++L PTRELA Q+++ FE  G    +   +++GG+    Q   + + 
Sbjct: 104 LWENPCPFF---GVVLAPTRELAYQISEQFEALGGAMGVKSVVIVGGMDMVTQAVAISKK 160

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +L+CTPGR++DH    K   + N++ LV+DEADR+LDM F P I  I  ++P  R+T 
Sbjct: 161 PHILVCTPGRLMDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPIIDKILKVIPKERRTF 220

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT +++K+    L NP RI V++  ST +T+   ++  +  +  K   L  ++ +
Sbjct: 221 LFSATMTSKVEKLQRASLHNPVRIAVSSKFSTVDTLLQKYL--FFPFKHKDTYLVYIV-N 277

Query: 242 QDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   ++ IIF    N  + V  L  SL   GFS   +HG + Q SR+  L+ FK G   +
Sbjct: 278 EMAGQSMIIFTRTVNDTQRVAILLRSL---GFSAIPLHGQLSQSSRLGALNKFKSGARSI 334

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIP V  V N+D+P  ++ YIHR+GRT RAGR GK+  LV + D++   
Sbjct: 335 LVATDVAARGLDIPLVDAVINYDIPTDSKAYIHRVGRTARAGRSGKSIALVTQYDLEPFL 394

Query: 359 AIEKLIEKKVD 369
            IE  I+KK++
Sbjct: 395 RIEAAIQKKME 405


>gi|299769392|ref|YP_003731418.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. DR1]
 gi|298699480|gb|ADI90045.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. DR1]
          Length = 383

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 140/374 (37%), Positives = 223/374 (59%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++  A+   G+ + TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 5   FETLNLHPQLKKAIDALGFKQMTPIQQKVLKYTLGGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     ++ R R   PR LIL PTRELA Q+  + +   K  +L +  L+GG+ F+ Q K
Sbjct: 65  LLHNPIQEQRFRGE-PRALILAPTRELALQIESDAKLLTKFSDLHIVTLLGGVDFDKQKK 123

Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +L+    D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P 
Sbjct: 124 QLDANFVDIIVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPR 183

Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTL+FSAT + ++  ++  +L  P  +E+     T   +E        Q   K  L
Sbjct: 184 KEQRQTLMFSATFSYDVLNLARQWLFEPITVEIEPEQKTNNDVEQRVYVVAKQ--DKYRL 241

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ +L+ ++ +   +IF N++  V  L   L++ G+ V  + G I Q  R+K+L  FK+G
Sbjct: 242 LQDILR-EEPIDKVMIFANRRDQVRRLYDHLKRDGYRVGMLSGEIAQDKRLKMLEQFKQG 300

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +M+A+D+A RG+ +  V HV N+ +P ++++Y+HRIGRTGRAG  G + + ++++D 
Sbjct: 301 KNNVMIATDVAGRGIHVDGVSHVINYTLPEQSDDYVHRIGRTGRAGSQGVSISFLSEDDA 360

Query: 355 KHIDAIEKLIEKKV 368
            ++  IEK I KK+
Sbjct: 361 FYLPEIEKAIGKKL 374


>gi|71275290|ref|ZP_00651577.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Dixon]
 gi|71902030|ref|ZP_00684074.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|71164099|gb|EAO13814.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Dixon]
 gi|71728209|gb|EAO30396.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
          Length = 544

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 138/375 (36%), Positives = 224/375 (59%), Gaps = 10/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F+   L P ++  +  AG+   TPIQ  T+P+ L   D+ G AQTGTGKT +F++ ++
Sbjct: 10  LNFSSFDLHPALLTGLTRAGFTLCTPIQALTLPVALAGSDIAGQAQTGTGKTLAFLVVVV 69

Query: 61  TILEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L      V      PR LIL PTRELA Q+ ++  K+G N  L  AL+ GG+ ++ Q 
Sbjct: 70  NRLLSRPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQR 129

Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L +GADV+I TPGR++D+  + +++ +   EI V+DEADRM D+GFI  I+ I   +P
Sbjct: 130 EMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLP 189

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
              +RQTLLFSAT++  + +++  ++  P+++   T S T   +       +    +K  
Sbjct: 190 ERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIY--FPAEEEKIP 247

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  LL   + M+  ++F N K  V  +  +L++ G+ V  + G++ QR R  +L+ F++
Sbjct: 248 LLLGLLSRSEGMRT-MVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQK 306

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +  
Sbjct: 307 GQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERY 366

Query: 354 IKHIDAIEKLIEKKV 368
              +  IE  IE+K+
Sbjct: 367 AMSLPDIEAYIEQKI 381


>gi|282600167|ref|ZP_05973223.2| ATP-independent RNA helicase DbpA [Providencia rustigianii DSM
           4541]
 gi|282566628|gb|EFB72163.1| ATP-independent RNA helicase DbpA [Providencia rustigianii DSM
           4541]
          Length = 476

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 144/372 (38%), Positives = 226/372 (60%), Gaps = 11/372 (2%)

Query: 3   FADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA+L   P    + L + G++  TPIQ   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 23  FAELNALPSEQLSNLNELGFLTMTPIQEAALPAILAGQDVRAQAKTGSGKTAAFGLGLLQ 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++   A+    ++L+L PTRELA QVA+   +  +   NL +  L GG+PF  Q   L 
Sbjct: 83  HID---AKNFNTQSLVLCPTRELADQVANELRRLARYIPNLKILTLCGGVPFSVQRDSLA 139

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             A V++ TPGR+LDH ++  + +++++ LV+DEADRMLDMGF   I  I S  P  RQT
Sbjct: 140 HAAHVIVATPGRLLDHLHKETVNLDHLQTLVLDEADRMLDMGFSDEIDAIISFAPHQRQT 199

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLL 239
           LLFSAT  + +  +S+    NP+ IE+N+ +   +  +  + VA +     K  LLQ+LL
Sbjct: 200 LLFSATWPESIADISQRIQNNPQTIEINSVNELPDVEQQFYEVARH----DKIELLQKLL 255

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+D   + +IFCN KK+   +  +L     SV  +HG+++QR R + L  F  G+ +++
Sbjct: 256 -SRDQPASCVIFCNTKKDCQAVFDALNDSKQSVLVLHGDMEQRDRDQTLVRFANGSSRVL 314

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI  +  V NF++    E ++HRIGRT RAG+ G A +L + E+ +  +A
Sbjct: 315 VATDVASRGLDIKALEMVINFELSWDPEVHVHRIGRTARAGQSGLAISLCSPEEAQRANA 374

Query: 360 IEKLIEKKVDWL 371
           +E+++  K++WL
Sbjct: 375 LEEMLNMKLNWL 386


>gi|257413647|ref|ZP_04743689.2| ATP-dependent RNA helicase, DEAD/DEAH family [Roseburia
           intestinalis L1-82]
 gi|257202759|gb|EEV01044.1| ATP-dependent RNA helicase, DEAD/DEAH family [Roseburia
           intestinalis L1-82]
          Length = 553

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 217/368 (58%), Gaps = 8/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P+V+ A+ + G+ + TPIQ + IP+V+   DV G AQTGTGKTASF +P+L  
Sbjct: 29  FDQLDLYPQVLRAIAEMGFEEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGIPVLHK 88

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           ++    + ++   +IL PTRELA QVAD   K  K  + + +  + GG     Q K L+ 
Sbjct: 89  VDPNNKKTQV---IILSPTRELAIQVADEIRKLAKYMHGVKILPVYGGQEISRQIKALKG 145

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180
           GA ++I TPGR++DH  R  +    +  +V+DEAD ML+MGF   I+ I   +P   RQT
Sbjct: 146 GAQIIIGTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEYIPEEGRQT 205

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +  +++ +  +   I+V     T   IE  +     +   K  +L +LL 
Sbjct: 206 VLFSATMPKPILDITKKYQHDAVTIKVVKKELTVPNIEQYYYDV--KRKDKIEVLTRLLD 263

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  K  ++FCN K+ V  L   L+ +G+    +HG++ Q  R +++  F+ G  ++++
Sbjct: 264 YYNP-KLSLVFCNTKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILI 322

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G+AFT V  +++  +  I
Sbjct: 323 ATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDI 382

Query: 361 EKLIEKKV 368
            +  + K+
Sbjct: 383 MRYCKTKI 390


>gi|255589747|ref|XP_002535074.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223524093|gb|EEF27309.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 465

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/344 (38%), Positives = 206/344 (59%), Gaps = 7/344 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL+P ++ A+ + GY +PT IQ   IP +L+  DV G AQTG+GKTA+F LP+L
Sbjct: 3   MSFSTLGLAPSLLNAIAEIGYDEPTAIQRAAIPAILRGEDVLGAAQTGSGKTAAFALPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNKK 118
             L   R   R    L+L PTRELA QV ++  K   + ++   VA++ GG+    Q   
Sbjct: 63  QSLLDNRDGPRQLHGLVLVPTRELAVQVGESIRKLVSHLSMPVKVAIVFGGVSINPQMMA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  GAD+++ TPGR+LD  +   L ++   +LV+DEADR+LD+GF   +  I +L+P  R
Sbjct: 123 LRGGADIVVATPGRLLDLIDHNALKISRAAMLVLDEADRLLDLGFSEELNRILALLPKQR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           Q L FSAT    +QK++++ L  P RIEV + P+S  + ++    A      ++  LL+ 
Sbjct: 183 QNLFFSATFPPAVQKLADSILHQPARIEVLSEPASKPDIVQR---AIAVDVPRRTMLLKH 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+Q +   +  ++F   K    ++   L + G    + HG + Q +R + L++F+ G +Q
Sbjct: 240 LIQ-EHQWRGVMVFVATKYAADHVADKLNRNGIRAASFHGELSQGARTETLTDFRSGRLQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
            +VA+D+AARG+DI  +  V N+D+P  A +Y HRIGRTGRA R
Sbjct: 299 ALVATDVAARGIDIARLPAVVNYDLPRSAVDYTHRIGRTGRAAR 342


>gi|221124370|ref|XP_002163179.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
           [Hydra magnipapillata]
          Length = 594

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 224/371 (60%), Gaps = 20/371 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL---------QRHDVCGIAQTGTGKTA 53
           F +LGL+P +V A  D GY +PT +Q K IPL +         +  D+   +QTG+GKTA
Sbjct: 44  FVELGLAPALVQACKDLGYTQPTTVQQKAIPLAMAGVGSEKAGKFVDLMVSSQTGSGKTA 103

Query: 54  SFVLPML-TILEKGRARVRMPRTLILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIP 111
           +F+LP+L T+L K       P  LI+ PTRELA QVA D  +       L VA ++GG+P
Sbjct: 104 AFLLPVLHTLLFK----APTPGALIVCPTRELAQQVAHDAIDLVQHCRGLRVANIVGGMP 159

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           ++ Q  KL+  A++++ TPGR+LD     ++ ++ ++ LV+DEADRMLD+GF   +  I 
Sbjct: 160 YQLQIAKLQN-ANLVVATPGRLLDLQRSMQIKLDQVQFLVVDEADRMLDLGFADDLAEIN 218

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSK 230
            L    +QT++FSAT    +Q+++   ++ P+R+ +++P      I+   F A  AQ+ +
Sbjct: 219 QLTIDRKQTMMFSATFAPRIQQLAARVMREPQRVTIDSPQEKHANIKQVLFWADNAQHKR 278

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K  LL   L+   T+   ++F + +     L + L++ GFS  A+HG + Q  R + L  
Sbjct: 279 K--LLDHWLRDT-TINQAVVFASTQIECDGLANDLQQDGFSAVALHGALSQGLRNRRLMA 335

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
            ++G +Q++VA+D+AARG+D+P + HVFNF +P +AE+Y HRIGRTGRAGR G A T   
Sbjct: 336 LRQGQVQILVATDVAARGIDVPTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAE 395

Query: 351 KEDIKHIDAIE 361
             D + I  IE
Sbjct: 396 FRDRRKIFDIE 406


>gi|332375408|gb|AEE62845.1| unknown [Dendroctonus ponderosae]
          Length = 469

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 137/367 (37%), Positives = 218/367 (59%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++DLGL   +  A     +  P+ IQ ++IP+ LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 41  WSDLGLVDVLCKACEQLKWKTPSKIQRESIPVALQGKDIIGLAETGSGKTAAFALPILQA 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +   R      LIL PTRELA Q+++ FE  G    +   +++GG+   +Q   L + 
Sbjct: 101 LLENPQR---HFALILTPTRELAFQISEQFEALGSGIGVKSIVIVGGLDMTSQALMLAKK 157

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             ++I TPGR++DH +  K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T 
Sbjct: 158 PHIIIATPGRLVDHLSNTKGFNLRALKFLVMDEADRILNMDFEAEVDKILKVIPRERRTF 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT ++ K+    LQ+P R+EV+T   T E +   +V   A++ K   L+  L  +
Sbjct: 218 LFSATMTKKVNKLQRACLQDPVRVEVSTKYQTVEKLLQYYVFIPAKF-KDVYLVHIL--N 274

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++   + ++FC+   N +     L   GF+   +HG + Q  R+  L+ FK     ++++
Sbjct: 275 ENAGNSFMVFCSTCNNTIRTALLLRNLGFTAVPLHGQMSQNKRLAALTKFKAKNRSILIS 334

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    IE
Sbjct: 335 TDVASRGLDIPHVDIVINFDIPMHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIE 394

Query: 362 KLIEKKV 368
            LI K++
Sbjct: 395 HLIGKQL 401


>gi|301778305|ref|XP_002924562.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Ailuropoda
           melanoleuca]
          Length = 935

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I
Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 549

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606


>gi|157145669|ref|YP_001452988.1| ATP-dependent RNA helicase DbpA [Citrobacter koseri ATCC BAA-895]
 gi|157082874|gb|ABV12552.1| hypothetical protein CKO_01417 [Citrobacter koseri ATCC BAA-895]
          Length = 457

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 138/354 (38%), Positives = 214/354 (60%), Gaps = 8/354 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY++ TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   A +   ++L+L 
Sbjct: 22  GYLEMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHID---ASLFQTQSLVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF AQ   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +G + ++ ++ LV+DEADRMLDMGF   I  +    P  RQTLLFSAT  + +  +S   
Sbjct: 139 KGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPSRRQTLLFSATWPEAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            QNP  IE+++  +   +IE  F  T +Q   K  LLQ+LL SQ    + ++FCN KK+ 
Sbjct: 199 QQNPLTIEIDSVDAL-PSIEQQFFETSSQ--GKIPLLQKLL-SQHQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            ++C +L   G S  ++HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QSVCDALNSVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
           NF++    E ++HRIGRT RAG  G A +  A E+ +  + + ++++ K++WL 
Sbjct: 315 NFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANILSEMLQLKLNWLT 368


>gi|88802153|ref|ZP_01117681.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Polaribacter irgensii 23-P]
 gi|88782811|gb|EAR13988.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Polaribacter irgensii 23-P]
          Length = 452

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 212/373 (56%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS ++  A+ D G+ +PTPIQ +   +V    DV GIAQTGTGKT +++LP+L
Sbjct: 1   MTFEDLDLSNQLQYAIDDLGFERPTPIQEQAFSVVRSGKDVVGIAQTGTGKTFAYMLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   + +   PR LIL PTREL  QV +   +  K  N  V  + GG     Q + ++
Sbjct: 61  RDLPFSKQQ--HPRVLILVPTRELVLQVVEQITQLSKYINTRVLGVYGGANINTQRQAIQ 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TPGR+ D      L M +I  LVIDE D MLD+GF   + NI  ++P  RQ 
Sbjct: 119 QGQDIIVATPGRLYDLAISNSLKMKSIHKLVIDEVDVMLDLGFRFQLMNIFDVIPEKRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+++  +  +F +NP++I V    +  + IE    AT   +  K  LL  LL+
Sbjct: 179 ILFSATMTEDVDALIYDFFKNPEKISVAVSGTPLDNIEQVSYAT-PNFFTKVNLLHTLLK 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS--VCAIHGNIDQRSRMKILSNFKEGTIQL 298
            ++T    +IF   K+    L   LE + F+  +C IH N  Q  R++ +  F EG  ++
Sbjct: 238 DRETFHKVLIFVGFKRTADLLFKHLE-EAFNDEICVIHSNKTQNYRIRSIRQFDEGKNRI 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+ ARGLD   V HV NFD P+  ENY+HRIGRTGRA + GK       ++ +   
Sbjct: 297 LLATDVMARGLDFDKVSHVINFDTPDFPENYMHRIGRTGRAEKAGKTILFSTPKEQEAKG 356

Query: 359 AIEKLIEKKVDWL 371
            IE L+  ++  L
Sbjct: 357 GIEVLMNYEIPLL 369


>gi|152977712|ref|YP_001343341.1| ATP-dependent RNA helicase SrmB [Actinobacillus succinogenes 130Z]
 gi|150839435|gb|ABR73406.1| DEAD/DEAH box helicase domain protein [Actinobacillus succinogenes
           130Z]
          Length = 440

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 131/362 (36%), Positives = 211/362 (58%), Gaps = 4/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  L+P+++ A+   GY +PT IQ ++IP+ ++  D+ G A TGTGKTA+F+LP L  
Sbjct: 6   FDDFDLAPELLKALAKKGYDRPTAIQQESIPVAMEEQDLLGSAPTGTGKTAAFLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR L+L PTRELA QVA+   +  +   L++A + GG+ ++   +   +
Sbjct: 66  LLDYPRKKPGAPRILVLTPTRELAMQVAEQAGELAQFTKLSIATITGGVAYQNHGEVFNK 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +         ++EIL+ DEADRML MGF    + I +   + +QTL
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  EL Q  ++  L NP +I V       + I   +    +    K  L+ + + 
Sbjct: 186 LFSATLEGELLQDFADRILDNPAKIAVEPSRRERKKINQWYYHADS-VEHKIKLVARFI- 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +Q+ +  GI+F  ++++V  L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 244 AQENVTKGILFVRRREDVRELSETLRKRGIRSTYLEGEMAQTQRNNSIDKLKNGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D + +  I
Sbjct: 304 ATDVAARGIDIDDISHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVENHDYRLLGKI 363

Query: 361 EK 362
           ++
Sbjct: 364 KR 365


>gi|241563473|ref|XP_002401718.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215501910|gb|EEC11404.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 371

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 213/364 (58%), Gaps = 13/364 (3%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +  LS +++ A+      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP++    
Sbjct: 3   NFNLSEELIIALETMNITEPTEIQKQSIPVAIAGSDILASSQTGSGKTLAYLLPLIDSFI 62

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           K +        LIL PTRELA Q+     K    Y +  A+LIGG P   Q  +L++   
Sbjct: 63  KNKTTA-----LILVPTRELATQIHSTLNKVTTPYKINSAVLIGGEPMPKQFMQLKKNPK 117

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG    ++ I   +P  RQ L+FS
Sbjct: 118 VIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEGINKFLPEKRQVLMFS 177

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQSQ 242
           ATM   +  +S+ +L NP RI V   +  A  I  E   ++   ++S+   L +QL   +
Sbjct: 178 ATMPKHIIALSQKYLNNPVRITVGATNKAAAEIKQESLHISDKEKFSE---LTKQLGNRE 234

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            ++   IIF   K++   L   L+ +     AIHG++ Q  R +++ +F++   ++MVA+
Sbjct: 235 GSV---IIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQHQRERVILSFRKSNHRIMVAT 291

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +D+    AI++
Sbjct: 292 DVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGYALSFISPDDVIRWRAIDR 351

Query: 363 LIEK 366
           L+ K
Sbjct: 352 LVNK 355


>gi|90409933|ref|ZP_01217950.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90329286|gb|EAS45543.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 462

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 139/371 (37%), Positives = 216/371 (58%), Gaps = 16/371 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGL   ++  + +  Y +PTPIQ + IP VL   D+   A TG+GKTA+F LP+L 
Sbjct: 42  NFTELGLISPLLARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPILQ 101

Query: 62  ILEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPF 112
            L + +       ++      LIL PTRELA QVAD+ + Y  ++N  +    + GG+  
Sbjct: 102 HLFQQQHANKPLSSKGNYVTGLILVPTRELAKQVADSIKSYAVHFNGAIKTVAVFGGVSA 161

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q   L  G D+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  +  
Sbjct: 162 NTQMLALRGGTDILVATPGRLLDLISSNAIKLDRVKTLVLDEADRMLSLGFTDELSALLD 221

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKK 231
           L+P  +QTLLFSAT  +++Q +++  L +P  +E+   S+ A T ++  F     +   K
Sbjct: 222 LLPKNKQTLLFSATFPEQVQALTQELLNDP--VEIQLQSADASTLVQRVFTVNKGE---K 276

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
            ALL  L++ Q   +  +IF N K +  +L   L K+G +    HG+  Q +R ++L  F
Sbjct: 277 TALLAHLIK-QHEWRQALIFVNAKNSCEHLADKLSKRGITAEVFHGDKGQGARTRVLEAF 335

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G I++++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G A +L+  
Sbjct: 336 KSGEIEVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDH 395

Query: 352 EDIKHIDAIEK 362
           +D  H   IEK
Sbjct: 396 DDYHHFKVIEK 406


>gi|78779495|ref|YP_397607.1| DEAD/DEAH box helicase-like [Prochlorococcus marinus str. MIT 9312]
 gi|78712994|gb|ABB50171.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str. MIT
           9312]
          Length = 593

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 137/371 (36%), Positives = 214/371 (57%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D G +  ++ ++ + GY  PTPIQ   IP ++   D+ G AQTGTGKTA+F LP++  
Sbjct: 53  FLDFGFNQSILNSLSNKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEK 112

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121
           L   +      + L++ PTRELA QVA++F+ Y  ++ N     + GG  +  Q   L+R
Sbjct: 113 LADNKEL--NAKVLVMTPTRELATQVAESFKSYSSESTNFKTIAIYGGTDYRNQIYALKR 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DV++ TPGRI+DH  +G   +N+I  LV+DEAD ML+MGF+  I+ I   +P  +Q +
Sbjct: 171 KVDVVVGTPGRIMDHIRQGTFKVNSINCLVLDEADEMLNMGFLEDIEWIIDQLPKNKQMV 230

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +E++ +++ +L +P  I + +     + I   F+  Y Q   K   L+++L+ 
Sbjct: 231 LFSATMPNEIRNIAKKYLNDPAEILIKSVKKETQLISQKFL--YVQRHHKLDALKRILEL 288

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  IIF   K    ++  +LE  G SV  ++G+I Q  R   +   K+G I ++VA
Sbjct: 289 NN--EGVIIFVRTKLLTTSIAEALENLGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVA 346

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D P   E Y HRIGRTGRAGR G+A   V   +   +  +E
Sbjct: 347 TDVAARGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNHREKHFLRNLE 406

Query: 362 KLIEKKVDWLN 372
                K++ +N
Sbjct: 407 NSTRTKIEEIN 417


>gi|168704554|ref|ZP_02736831.1| ATP-dependent RNA helicase [Gemmata obscuriglobus UQM 2246]
          Length = 523

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 136/372 (36%), Positives = 215/372 (57%), Gaps = 11/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADL L   ++ A+  AGY  PTPIQ   IP  L+  DV G AQTGTGKTA+F++P L
Sbjct: 86  MLFADLKLMRPLMDAITAAGYKNPTPIQENVIPPALRGKDVIGQAQTGTGKTAAFLIPFL 145

Query: 61  TILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 R R   ++ P  +++ PTRELA Q+A+  EK   +       + GG   + Q  
Sbjct: 146 N-----RWRPHTLKGPIGVVMTPTRELALQIANEAEKLAPSKRFRCVPVYGGTGMQRQLD 200

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+++ TPGR+LDH  RG + ++ +   V+DEADRMLD+GF   I+ I    P  
Sbjct: 201 GLTRGCDLVVGTPGRMLDHLQRGSMSLSQVRYAVLDEADRMLDIGFRDDIERILKRCPSE 260

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLL SAT+ D ++++   ++++P  + +     T + I   +        +K  LL++
Sbjct: 261 RQTLLMSATVPDSIKRLVNRYMRDPVHLHMMPEKPTVDKIRQSYFTV--DQDRKFELLKR 318

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++ +   +  +IF  +K+   NL   L++       IHG++ Q  R KI++ F+   I+
Sbjct: 319 VVEREKP-RQCLIFVERKRWADNLYRDLKRAVPKAAVIHGDLPQSQREKIMAAFRTADIK 377

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++A+D+ +RG+D+  + HV N+D+P   ENY+HRIGRTGR G+ G A + V  E  +H+
Sbjct: 378 YLIATDVMSRGIDVSGLSHVINYDLPMDIENYVHRIGRTGRIGKDGIAISFVLPEQGEHL 437

Query: 358 DAIEKLIEKKVD 369
             IE +I + ++
Sbjct: 438 TNIEMMINRLIE 449


>gi|89902343|ref|YP_524814.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
 gi|89347080|gb|ABD71283.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
          Length = 421

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 141/365 (38%), Positives = 208/365 (56%), Gaps = 6/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLSP ++ A+ D  +  PTPIQ   +   LQ  D+   AQTG+GKTA+F LP+L
Sbjct: 1   MPFSSLGLSPALLRAISDQAWSAPTPIQAVAMGPALQGRDLLASAQTGSGKTAAFALPLL 60

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNK 117
              E    +  R  R LIL PTREL+ QV +     G++    L V+++ GG+    Q  
Sbjct: 61  QQFEAAVPQSPRRLRALILVPTRELSTQVGEEIRFLGQHLPRALKVSIVFGGVSINPQML 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  GAD+++ TPGR+LD  +   L ++ +  LV+DEADR+LD+GF   +  I +L+P  
Sbjct: 121 RLRGGADIVVATPGRLLDLIDHNALSLSGVATLVLDEADRLLDLGFAEELNRILALLPVQ 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ L FSAT    +Q +++  L++P RIEV     T   IE   +   A  +++  LL+ 
Sbjct: 181 RQNLFFSATFPPAVQTLAQVLLRDPVRIEVAPEPQTQPDIEQRVIEVDA--AQRTQLLRH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ +Q      ++F   K     +   L K   +    HG + Q  R ++L++FK   ++
Sbjct: 239 LM-AQHHWSRVLVFVATKHAAEMVADKLRKARINAEPFHGELSQGKRTQVLADFKASRLK 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  +  V NFD+P  A +YIHRIGRTGRAG  G A + V+     H 
Sbjct: 298 VVVATDVAARGLDIAQLPVVVNFDLPRSALDYIHRIGRTGRAGEKGVALSFVSAATDAHW 357

Query: 358 DAIEK 362
             IEK
Sbjct: 358 RLIEK 362


>gi|42521946|ref|NP_967326.1| putative ATP-dependent RNA helicase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574476|emb|CAE77980.1| putative ATP-dependent RNA helicase [Bdellovibrio bacteriovorus
           HD100]
          Length = 412

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 142/374 (37%), Positives = 220/374 (58%), Gaps = 6/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    LS  ++  + D G+ + T IQ K IP +L+  DV  IAQTGTGKTA+F +P++
Sbjct: 1   MKFEKFHLSEDLLRNLTDNGFFRTTDIQYKAIPSILKGEDVLAIAQTGTGKTAAFAIPII 60

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            ++  EK   R    + LIL PTRELA Q+ + F K  K+  +    L GG+  +AQ +K
Sbjct: 61  NMIHTEKSSKRAIGIKCLILVPTRELAQQIGEVFNKLSKHTKVKPFALFGGVEQDAQIQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+LI TPGR+ D   +G + ++ IE LV+DEAD MLD+GFI  I ++   +    
Sbjct: 121 LQDGIDILISTPGRMFDLIAQGHVDISRIETLVLDEADHMLDLGFIDDITSVKRKLTKRH 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPK-RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL FSAT+  E++K++ + +++   RI+++     ++ I H FV       K+  L + 
Sbjct: 181 QTLFFSATINPEIKKLAFSQVRSSAIRIQISPEDPVSKNITH-FVMHVEMDDKRFFLAEY 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L Q+ D     IIF   +     +  +L +       +HG  DQ  R +++  F++G  +
Sbjct: 240 LRQNPDG--KFIIFVRTRVRAERVAKALARVEVQSLTLHGEKDQTDRAEVMKTFRKGDCK 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+DL+ARG+DIPDV HV N+D+P + ENY+HRIGRTGR    G A +  + E+   +
Sbjct: 298 ILIATDLSARGIDIPDVTHVINYDLPEKPENYVHRIGRTGRGFNKGVAVSFCSTEEKPLL 357

Query: 358 DAIEKLIEKKVDWL 371
             +E LI KK++ L
Sbjct: 358 AEVESLITKKIEVL 371


>gi|328852836|gb|EGG01979.1| hypothetical protein MELLADRAFT_78893 [Melampsora larici-populina
           98AG31]
          Length = 537

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 134/370 (36%), Positives = 210/370 (56%), Gaps = 10/370 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++ G    ++  +  AG+ +P+PIQ +  P+ L   DV  I+ TG+GKT +F LP + 
Sbjct: 108 NFSEAGFPDYIMAEIRKAGFTEPSPIQCQAWPMALSGRDVVAISATGSGKTIAFSLPAMI 167

Query: 62  ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                 +L  G      P  LIL PTRELA Q+     K+G +  +    + GG+P   Q
Sbjct: 168 HINAQPLLAPGDG----PIVLILAPTRELAVQIQGECTKFGASSRIRNTCVYGGVPKGQQ 223

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L RGA+++I TPGR++D     +  +  +  LV+DEADRMLDMGF P I+ I   + 
Sbjct: 224 IRDLSRGAEIVIATPGRLIDMLESRRTNLQRVTYLVMDEADRMLDMGFEPQIKKILEQIR 283

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTL+FSAT   E+Q+++  +L++  ++ V +   TA       V   + + KK  L+
Sbjct: 284 PDRQTLMFSATWPKEIQRLANEYLKDFIQVNVGSLELTANVNITQIVEVCSDFEKKGKLI 343

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + L +        +IF   K+   +L   L + G+   AIHG+  Q  R  +L  FK G 
Sbjct: 344 KHLEKISAESAKVLIFVGTKRVADDLTKYLRQDGWPSLAIHGDKQQTERDWVLGEFKSGR 403

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +M+A+D+A+RGLD+ DV +V N+D+PN  E+YIHRIGRTGRAGR G A++ ++ +  K
Sbjct: 404 SPIMIATDVASRGLDVKDVAYVINYDMPNGIEDYIHRIGRTGRAGRTGTAYSYISADQGK 463

Query: 356 HIDAIEKLIE 365
               + K+++
Sbjct: 464 LARELVKILQ 473


>gi|152965134|ref|YP_001360918.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
           SRS30216]
 gi|151359651|gb|ABS02654.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
           SRS30216]
          Length = 565

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 131/370 (35%), Positives = 213/370 (57%), Gaps = 9/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA+ G+ P++  ++  AG   P PIQ  T+P+ L  HD+ G A+TGTGKT  F +P+L  
Sbjct: 30  FAEHGVDPRIAQSLAGAGITTPFPIQSMTLPVALSGHDIIGQAKTGTGKTLGFGVPLLQR 89

Query: 61  TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           T +    A   +P     + L++ PTRELA QVA +     +NY   +  + GG  +E Q
Sbjct: 90  TAVPGDPAYDALPNPGKPQALVIVPTRELATQVAGDLTTASRNYPARILTVYGGRAYEPQ 149

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L +G DV++ TPGR+LD   +  L ++N++ +V+DEAD MLD+GF+P ++ + +   
Sbjct: 150 IDALTKGVDVVVGTPGRLLDLAQQRHLDLSNVKCVVLDEADEMLDLGFLPDVERLIAQTD 209

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234
             RQT+LFSATM   +  ++ +++  P  I    P+    T+       Y  ++  K  +
Sbjct: 210 PARQTMLFSATMPGPVVAMARSYMSRPTHIRAVDPTDDGATVAAITQFAYRTHALDKVEV 269

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L ++LQ+       I+F   K+   ++   L ++GF+  +IHG++ Q +R + L  F+ G
Sbjct: 270 LARMLQATGRGLT-IVFSRTKRTAASVAEQLTERGFAAASIHGDLGQGAREQALRAFRHG 328

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+  P   + Y+HRIGRTGRAG  G A T V  +++
Sbjct: 329 KVDVLVATDVAARGIDVEDVTHVINYQCPEDEKTYLHRIGRTGRAGNTGVAVTFVDWDEL 388

Query: 355 KHIDAIEKLI 364
                I+K +
Sbjct: 389 PRWSLIDKAL 398


>gi|153806359|ref|ZP_01959027.1| hypothetical protein BACCAC_00620 [Bacteroides caccae ATCC 43185]
 gi|149131036|gb|EDM22242.1| hypothetical protein BACCAC_00620 [Bacteroides caccae ATCC 43185]
          Length = 420

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 140/373 (37%), Positives = 224/373 (60%), Gaps = 11/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ + IP++L+  D+  +AQTGTGKTA+F+LP+L
Sbjct: 1   MKFSELQLNANVLEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL---TVALLIG--GIPFEAQ 115
             L +G+        +I+ PTRELA Q+    E  G +Y +   +VA+  G  GI FE Q
Sbjct: 61  NKLSEGKHPEDAINCVIMSPTRELAQQIDQQME--GFSYFMPASSVAVYGGNDGILFEQQ 118

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P
Sbjct: 119 KKGLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYDDIMQIVKYLP 178

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT++FSATM  ++Q+++   L NP  I++       + I+  +V    Q   K  ++
Sbjct: 179 KERQTIMFSATMPAKIQQLANTILNNPSEIKLAVSRPADKIIQAAYVCYENQ---KLGII 235

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + L   +   +  IIF + K  V  +  +L+    +V  +H +++Q  R  ++ +FK G 
Sbjct: 236 RNLFMDE-VPERVIIFASSKIKVKEVTKALKSMKLNVGEMHSDLEQVQREAVMHDFKAGR 294

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+ ARG+DI D+  V NFDVP+ +E+Y+HRIGRT RA   G A T V++++  
Sbjct: 295 INILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFVSEKEQS 354

Query: 356 HIDAIEKLIEKKV 368
           +  +IE  +EK++
Sbjct: 355 NFKSIENFLEKEI 367


>gi|206576701|ref|YP_002238858.1| ATP-independent RNA helicase DbpA [Klebsiella pneumoniae 342]
 gi|206565759|gb|ACI07535.1| ATP-independent RNA helicase DbpA [Klebsiella pneumoniae 342]
          Length = 457

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 142/382 (37%), Positives = 218/382 (57%), Gaps = 9/382 (2%)

Query: 3   FADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L + P    A L + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLTVLPAAQLANLNELGYLSMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++  R   +   +L+L PTRELA QVA    +  +   N+ + +L GG PF AQ   L+
Sbjct: 64  HIDPARFETQ---SLVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ ++ LV+DEADRMLDMGF   I  +    P  RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +  +S    +NP+ IE++T  +    IE  F         K ALLQ LL 
Sbjct: 181 LLFSATWPAAIAAISGRVQRNPQTIEIDTVDAL-PAIEQQFFEV--SRHGKIALLQHLL- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN K++   +C +L   G S  ++HG+++QR R + L  F  G+++++V
Sbjct: 237 SQHQPASCVVFCNTKRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +    +
Sbjct: 297 ATDVAARGLDIKSLALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQRATIL 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPL 382
             +++  ++WL     +   PL
Sbjct: 357 ADMLQLSLNWLPAPTGNTIAPL 378


>gi|157838001|ref|NP_082350.3| ATP-dependent RNA helicase DDX42 [Mus musculus]
 gi|123796460|sp|Q810A7|DDX42_MOUSE RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|74146847|dbj|BAE41388.1| unnamed protein product [Mus musculus]
 gi|123242261|emb|CAM23778.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Mus musculus]
          Length = 929

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 212/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L  +L+++G ++  +HG++DQ  R K++S+FK+  I
Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 549

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606


>gi|148827621|ref|YP_001292374.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittGG]
 gi|148718863|gb|ABQ99990.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG]
          Length = 439

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 137/383 (35%), Positives = 215/383 (56%), Gaps = 6/383 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP L  
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEARDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++        
Sbjct: 66  LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QTL
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  EL    ++  L +P R++        + I   +    +    K  LL + ++
Sbjct: 186 LFSATLEGELLVDFADRLLNDPVRVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++  + GI+F  ++++   L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 245 TEEVTR-GIVFIRRREDARELSETLRKRGIRSAYLEGKMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381
           ++  E+  KV  L G      PP
Sbjct: 364 KRYTEEILKVRILAGLEPRTKPP 386


>gi|94984710|ref|YP_604074.1| DEAD/DEAH box helicase-like protein [Deinococcus geothermalis DSM
           11300]
 gi|94554991|gb|ABF44905.1| ATP-dependent RNA helicase DbpA [Deinococcus geothermalis DSM
           11300]
          Length = 591

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 135/368 (36%), Positives = 211/368 (57%), Gaps = 14/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  L ++P++   + + G  + +PIQ +++P  L   D+ G A+TGTGKT +F LP++
Sbjct: 1   MNFDQL-IAPELAARLAERGITEASPIQAESLPHTLAGKDLIGRARTGTGKTLAFALPII 59

Query: 61  TIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L        R R R+PR +++ PTRELA QVA+ F K G    L+   + GG  +  Q
Sbjct: 60  QNLTAPDGRGSRERGRLPRAIVIAPTRELAKQVAEEFSKSGPQ--LSTVTVYGGAAYGPQ 117

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG DV++ TPGR++DH  RG L ++ I+  V+DEAD ML +GF   I+ I    P
Sbjct: 118 ENALRRGVDVVVGTPGRLIDHLERGNLDLSAIQYAVLDEADEMLSVGFADAIETILQQTP 177

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCA 233
             RQT+LFSAT+ DE+ +++  +L+ P  +++     S  A+++EH  V        +  
Sbjct: 178 AARQTMLFSATLNDEIHRLARKYLREPVVVDLVGEGKSQAAQSVEHLKVKV---GRTRTR 234

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +L  LL   +  K  I+F   K+    L + L  +G    A+HG++ Q  R + L  F+ 
Sbjct: 235 VLADLLTVYNPEK-AIVFTRTKREADELANELIHRGIESEALHGDLAQSQRERALGAFRS 293

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G + ++VA+D+AARGLDIP+V  V  + +P   E+Y+HR GRTGRAGR G A  +    +
Sbjct: 294 GRVGVLVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIVMYGDRE 353

Query: 354 IKHIDAIE 361
            + +  +E
Sbjct: 354 NRELRNLE 361


>gi|326566475|gb|EGE16625.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis BC1]
          Length = 380

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 149/381 (39%), Positives = 231/381 (60%), Gaps = 25/381 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DL LS  ++ AV    + + TPIQ + +P  L   D  G AQTGTGKTA+F   ++T
Sbjct: 8   NFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATF---LIT 64

Query: 62  ILEKGRAR------VRM---PRTLILEPTRELAAQV-AD--NFEKYGKNYNLTVALLIGG 109
           I+E    R      +R    PR L+L PTRELA Q+ AD     ++ + YNL +    GG
Sbjct: 65  IIESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCRELTRFSQLYNLCIT---GG 121

Query: 110 IPFEAQNKKL-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
             F+ Q ++L +R  D+LI TPGRI+D  N+G+L ++ +E+ V+DEADRMLDMGFIP I+
Sbjct: 122 SDFDKQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIK 181

Query: 169 NITSLVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
            I   +P    RQ+LLFSAT   ++  ++  +L  P  +E+   S T + I+  F     
Sbjct: 182 RIVRHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTE 241

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           +  +K + L+Q+L + D++K  IIF N+K  V  L   L +    V  + G++ Q+ R +
Sbjct: 242 R--EKTSALKQIL-ADDSVKKTIIFANRKDQVKRLYDYLRRH-HKVTMLSGDVAQQKRER 297

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  FK+G + ++VA+D+A RG+ + DV HV N+ +P+  ++Y+HRIGRTGRAG  G + 
Sbjct: 298 YLQRFKDGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSI 357

Query: 347 TLVAKEDIKHIDAIEKLIEKK 367
           + V++ D  ++ A+E+ I++K
Sbjct: 358 SFVSENDAFNLPALERHIDQK 378


>gi|241888805|ref|ZP_04776111.1| ATP-dependent RNA helicase DeaD [Gemella haemolysans ATCC 10379]
 gi|241864481|gb|EER68857.1| ATP-dependent RNA helicase DeaD [Gemella haemolysans ATCC 10379]
          Length = 486

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 137/359 (38%), Positives = 214/359 (59%), Gaps = 7/359 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG+S + V ++ +  ++ PT IQ +TIP VL   D+   AQTG+GKT +F +P++  
Sbjct: 4   FEELGVSQETVQSLTNMNFISPTGIQTETIPYVLSGVDILAQAQTGSGKTGAFGIPLVDT 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +     R    ++LIL PTRELA QV +      +   L V+++ GG   E Q + L++ 
Sbjct: 64  VR----RNDQLQSLILAPTRELAQQVGEQLRLMSRAKGLKVSIVFGGTSIERQIQDLKKR 119

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++DH NR  + +  +  LV+DEAD ML+MGFI  ++ I S +    QTLL
Sbjct: 120 PQIIVGTPGRVIDHINRRTIKLETLTHLVLDEADEMLNMGFIEDVRFILSKITSRHQTLL 179

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   + ++S+ F+++ K I+  +       I     AT A+ ++K   L   L  Q
Sbjct: 180 FSATMPKTIMELSKEFMKDYKLIKTMSDEDLKPDITEY--ATIARENEKLETLVGFLDVQ 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     I+F   K+ V  L  +L  +G+    +HG+I Q  R++IL  FK  ++Q++VA+
Sbjct: 238 NP-NLAIVFGRTKRRVDELASALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQILVAT 296

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           D+AARG+DI DV HV+NFD+P   E+Y HRIGRTGRAG+ G A T +   ++ ++  IE
Sbjct: 297 DVAARGIDISDVTHVYNFDIPQDVESYTHRIGRTGRAGKSGVAITFLNPVEMPYLKDIE 355


>gi|154490238|ref|ZP_02030499.1| hypothetical protein PARMER_00470 [Parabacteroides merdae ATCC
           43184]
 gi|154089130|gb|EDN88174.1| hypothetical protein PARMER_00470 [Parabacteroides merdae ATCC
           43184]
          Length = 427

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 142/409 (34%), Positives = 235/409 (57%), Gaps = 10/409 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   V+  +    +++ TP+Q  TIP++L+  D+   AQTGTGKTA++VLP++
Sbjct: 1   MRFDELDLEEAVLDGLDAMNFLETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             L KG         +I+ PTRELA Q+    E +     ++   + GG   I +E Q +
Sbjct: 61  NELSKGLHPANAINAIIMAPTRELAQQIDQQIEGFTYFVPVSAVAVYGGTDGIAWEQQKR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +E GAD++I TPGR+L H   G + ++ +   V+DEADRMLDMGF   I  +  L+P T
Sbjct: 121 GMEMGADIVIATPGRLLSHIKLGTVDLSQVSFFVLDEADRMLDMGFYDDIMQVYKLLPAT 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            QT++FSATM  +++ +++  L+NP+ +++   S   ETI       Y    +K  +L+ 
Sbjct: 181 CQTIMFSATMPPKIRTLAQTILKNPEEVKIAI-SRPPETIMQTAYVCYDM--QKLRILED 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L  S+   +  IIF + K  V  L  +L++  F+V A+H +++Q  R +++  FK G I 
Sbjct: 238 LF-SKSRPQRVIIFSSSKMKVKELASTLKRMKFNVAAMHSDLEQSQREEVMKEFKNGRID 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKH 356
           ++VA+D+ +RG+DI D+  V NFD+P+  E+Y+HRIGRT R     G A T ++ E+   
Sbjct: 297 ILVATDVVSRGIDINDIKLVINFDIPHDPEDYVHRIGRTARGTNGEGLAITFISTEEQFQ 356

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
              IE+ ++K++  +  D      PL + +  ++++ R+    P+K  G
Sbjct: 357 FKRIEEFLDKEIYKIPVDPKFGETPLYEPE--KYSNMRRGRGRPRKDGG 403


>gi|262042929|ref|ZP_06016074.1| ATP-independent RNA helicase DbpA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039769|gb|EEW40895.1| ATP-independent RNA helicase DbpA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 457

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 142/382 (37%), Positives = 219/382 (57%), Gaps = 9/382 (2%)

Query: 3   FADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L + P    A L + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLTVLPAAQLANLNELGYLSITPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++  R   +   +L+L PTRELA QVA    +  +   N+ + +L GG PF AQ   L+
Sbjct: 64  HIDPARFETQ---SLVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ ++ LV+DEADRMLDMGF   I  +    P  RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +  +S    +NP+ IE++T  +    IE  F         K ALLQ+LL 
Sbjct: 181 LLFSATWPAAIAAISGRVQRNPQTIEIDTVDAL-PAIEQQFFEV--SRHGKIALLQRLL- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN K++   +C +L   G S  ++HG+++QR R + L  F  G+++++V
Sbjct: 237 SQHQPASCVVFCNTKRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +    +
Sbjct: 297 ATDVAARGLDIKSLALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQRATIL 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPL 382
             +++  ++WL     +   PL
Sbjct: 357 ADMLQLSLNWLPAPTGNTIAPL 378


>gi|89093138|ref|ZP_01166088.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
 gi|89082434|gb|EAR61656.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
          Length = 417

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 142/388 (36%), Positives = 217/388 (55%), Gaps = 8/388 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS      +   GY +PT IQ K IP VL+ HD+   A+TG+GKTA FVLP+L
Sbjct: 1   MSFVSLGLSDFFTSTLSSLGYKEPTAIQDKAIPAVLKGHDLIAAAETGSGKTAGFVLPLL 60

Query: 61  TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNK 117
             L    A    +   L+L PTRELA QV+ + ++Y +N    +    + GG     Q +
Sbjct: 61  EKLHSIPAPGNNLTHALVLVPTRELAVQVSQSVDRYSENCPRKIRSVAIYGGAAINPQMQ 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +G D+++ TPGR+LD   +  L +  ++ LV+DEADRMLD+GF   + +I    P  
Sbjct: 121 SLSKGCDIVVATPGRLLDLMRKNALDLRGLKALVLDEADRMLDLGFADELDDILDQTPGN 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            QTLLFSAT  D++++++E  L+NP  I V   ++  + +     A     + +  LL+ 
Sbjct: 181 VQTLLFSATFPDKVKELTEELLRNPVEISVKQEATLPDQLHQ--RAIEVDRNNRTMLLKH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++ Q+  +  +IF   K+   N+   L + G     +HG++ Q+ R+  L +F +G  +
Sbjct: 239 LIK-QEKWQQLLIFVGSKRTANNIELKLYRSGIQSSTLHGDLTQKERLGALEDFSKGRCK 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+DLAARG+DIP +  V N+D+P    +Y+HR GRT RAG  G A + V  E   H 
Sbjct: 298 ILIATDLAARGIDIPSLPCVLNYDLPRATSDYVHRAGRTARAGEAGLAISFVDHESDAHF 357

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLE 383
             IEK I  K+  + + G   +  PP E
Sbjct: 358 KLIEKRIRMKIPREQIPGFERAQEPPKE 385


>gi|294637929|ref|ZP_06716198.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda ATCC 23685]
 gi|291088955|gb|EFE21516.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda ATCC 23685]
          Length = 429

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 144/373 (38%), Positives = 216/373 (57%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FAD  L P V+ A+   G+   TPIQ   +PL +   DV G AQTGTGKT +F+      
Sbjct: 11  FADFALHPMVIKALESKGFHSCTPIQALALPLAIAGRDVAGQAQTGTGKTLAFLASTFHY 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT       +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLTHPAIAERKTNQPRALIMAPTRELAVQIHSDAEPLARETGLRLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE+G D+LI T GR++D+  +G + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LEQGVDILIGTTGRLIDYAKQGHVDLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPVA 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEHMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q LL+ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G 
Sbjct: 248 QTLLE-EEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVPQKKRLRILDDFTKGH 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E + 
Sbjct: 307 IDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGNSISLACEEYVL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIENYIGHSI 379


>gi|270296763|ref|ZP_06202962.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270272750|gb|EFA18613.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 429

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 223/371 (60%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ K+IP++L+  D+  +AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELHLNGNVLEALDAMRFEECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             L +G         +++ PTRELA Q+    E +     ++   + GG   I FE Q +
Sbjct: 61  NKLSEGGHPADAINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++ N L NP  +++       + ++  +V    Q   K  +++ 
Sbjct: 181 RQTIMFSATMPAKIQQLAGNILNNPAEVKLAVSKPAEKIVQAAYVCYENQ---KLGIIRS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L  +++T +  IIF + K  V  +  +L++   +V  +H +++Q  R +++  FK G I 
Sbjct: 238 LF-AEETPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V++++    
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVAITFVSEKEQGSF 356

Query: 358 DAIEKLIEKKV 368
             IEK +++ +
Sbjct: 357 KNIEKFLDRDI 367


>gi|223993165|ref|XP_002286266.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977581|gb|EED95907.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 480

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 146/393 (37%), Positives = 231/393 (58%), Gaps = 16/393 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D   S  +   +  AG+ +PT IQ +  P+ +   D+  +A+TG+GKT  F+LP  
Sbjct: 46  IEFGDAPFSDSIQKTLKSAGFERPTFIQSQAWPIAINGSDMICVAKTGSGKTCGFLLPSF 105

Query: 61  TILEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               + +A      + P  L+L PTRELA Q+ D  +K+G+   +      GG P  AQ 
Sbjct: 106 HQYFQSKATANKGGKGPIMLVLAPTRELACQILDETQKFGRPIGIRSVCCYGGSPKYAQI 165

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             LERG + +I TPGR+ D     K  ++N++ +V+DEADRMLDMGF P I++I   VP 
Sbjct: 166 AALERGVECVIATPGRLNDLIEMKKANLSNVKFVVLDEADRMLDMGFEPQIRSIMGSVPD 225

Query: 177 T--RQTLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTAETIEHCFVATYAQYSKK 231
           +  RQTLLFSAT   E+Q+++ +FL +P +I   E+N  ++  +  +   + +      K
Sbjct: 226 STNRQTLLFSATWPKEIQRLAFDFLSDPIQINVGEINVLNANKDITQKIMMCS---EDDK 282

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L+++L      K  I+F  +K     L + L  +GF+V ++HG+ +Q  R K+++ F
Sbjct: 283 IDRLKEILTDLKHSKV-IVFVGKKYVAHELANQLWDEGFAVDSLHGDREQWERTKVINAF 341

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVP---NRAENYIHRIGRTGRAGRHGKAFTL 348
           K+GT++L++A+D+AARGLD+ DVG V N+D+P   N AE+YIHRIGRTGRAG  G A+T+
Sbjct: 342 KQGTLRLLIATDVAARGLDVKDVGVVVNYDMPVGVNGAEDYIHRIGRTGRAGAKGIAYTM 401

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
               D K    + +++EK    +  +L ++  P
Sbjct: 402 FTPGDKKLATQLVEILEKAEQEVPAELKAMARP 434


>gi|300857956|ref|YP_003782939.1| hypothetical protein cpfrc_00538 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685410|gb|ADK28332.1| hypothetical protein cpfrc_00538 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302205685|gb|ADL10027.1| Putative ATP-dependent RNA helicase [Corynebacterium
           pseudotuberculosis C231]
 gi|302330237|gb|ADL20431.1| Putative ATP-dependent RNA helicase [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275920|gb|ADO25819.1| Putative ATP-dependent RNA helicase [Corynebacterium
           pseudotuberculosis I19]
          Length = 441

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 140/358 (39%), Positives = 207/358 (57%), Gaps = 10/358 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG++ ++V A+ + G      IQ  T+P+ L   D+ G A+TG GKT  F +P+L  
Sbjct: 10  FAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGRARTGMGKTLGFGVPLLDR 69

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +        +   PR L++ PTRELA QV ++ E+  +   + V  + GG P+E Q + L
Sbjct: 70  VFDAADVAELDGTPRALVVVPTRELAQQVGEDLERAARRTPVRVTTVYGGRPYEEQIQVL 129

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DV++ TPGR++D   +G L ++++ ILV+DEAD MLD+GF P I+ +   +    Q
Sbjct: 130 TAGVDVVVGTPGRLIDLHQQGNLTLDHVAILVLDEADEMLDLGFFPDIEKLLGALKHQHQ 189

Query: 180 TLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           TLLFSATM   +  ++  F+  P  I   EVN  S T  +IE   V   A    K A+  
Sbjct: 190 TLLFSATMPGPVLTLARTFMSRPIHIRAEEVNA-SHTHASIEQ--VVFQAHRMDKTAITA 246

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + LQ+++  K  IIF   K+    L   L  +GF V  +HG++ Q +R   L  F+ G +
Sbjct: 247 RALQAKERGKT-IIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAARELSLGMFRNGRV 305

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            ++VA+D+AARGLDI DV HV N+  P+    Y+HRIGRTGRAG  G A TLV  +++
Sbjct: 306 DILVATDVAARGLDIDDVTHVINYQTPDAPMTYVHRIGRTGRAGHTGTAITLVGYDEL 363


>gi|262280249|ref|ZP_06058033.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
           [Acinetobacter calcoaceticus RUH2202]
 gi|262258027|gb|EEY76761.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
           [Acinetobacter calcoaceticus RUH2202]
          Length = 640

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 140/376 (37%), Positives = 222/376 (59%), Gaps = 13/376 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  L   +  A+   G+  PT +Q + IP  L+  D+   +QTG+GKTA+F+LP L  
Sbjct: 5   FAEFSLHETLQQALEGLGFTTPTTVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64

Query: 63  LE--------KGRAR-VRMPRTLILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIPF 112
           L         K R + V  P  L++ PTRELA QV+ D          + +A ++GG+PF
Sbjct: 65  LAGQESVVPFKDRMKAVTQPNILVISPTRELAQQVSQDAIALVRHMKGVRIAAIMGGMPF 124

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q ++L +GA V++ TPGR+LD  NR ++ ++ ++ L++DEADRMLD+GF   ++ I+ 
Sbjct: 125 AKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEADRMLDLGFSEDLEAISE 183

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L    +QTL+FSAT  D + +++   +++P RI + T  ST   I      T   +  K 
Sbjct: 184 LAANRKQTLMFSATFADRIIRLASCMMKDPMRIAIETGHSTNTDITQTLHWTDG-FEHKK 242

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL   L S + +   ++F + +++   L   L + G SV A+HG + Q  R + L + +
Sbjct: 243 KLLTHWL-SDENLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIR 301

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL    
Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYR 361

Query: 353 DIKHIDAIEKLIEKKV 368
           +   I A+E+ +E ++
Sbjct: 362 ERGKIRALEEYLEARL 377


>gi|117620545|ref|YP_858124.1| ATP-dependent RNA helicase SrmB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561952|gb|ABK38900.1| ATP-dependent RNA helicase SrmB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 407

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 137/368 (37%), Positives = 214/368 (58%), Gaps = 4/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  L+P +  A+ + G+ +PT IQ   +   L   D+   A TGTGKTA+F+LP L  
Sbjct: 5   FDDFDLNPALNRALAEMGFSRPTTIQQMVLEPALDGRDILASAPTGTGKTAAFLLPALQH 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +    R L+L PTRELA QV  + +    + NL++  +IGG+  E Q   L +
Sbjct: 65  LLDFPRRKPGPCRMLVLTPTRELALQVTAHAKALAAHTNLSIETIIGGVSHEEQLPALTK 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L++  + +   ++IE+LV+DEADRMLDMGFI  +  I     + + T+
Sbjct: 125 TTDIVVATPGRLLEYIEKEEFESHDIEVLVLDEADRMLDMGFIKDVNRIVEEARYRKHTM 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+    L+K + + L+ P  +    P S    I   +V      + K ALL  +L+
Sbjct: 185 LFSATLEGAGLEKFANDILKEPVELHAEPPRSERRPITQ-WVHLADDAAHKLALLVHILK 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +T K  IIF   ++ +  L   L+  G S   I G ++Q  R++ +  F EG +  ++
Sbjct: 244 DPETQK-AIIFVKTRERLAELSGQLQAAGVSCAWIRGEMEQSKRIESIRKFHEGEVPFLI 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+P+V HV N+D+P  A+ Y+HRIGRTGRAG  G A +LV   D+  +  I
Sbjct: 303 ATDVAARGIDLPNVSHVINYDMPYGADVYVHRIGRTGRAGNRGCAISLVEAHDMAMVAKI 362

Query: 361 EKLIEKKV 368
           E+  E+++
Sbjct: 363 ERYTEERL 370


>gi|242059637|ref|XP_002458964.1| hypothetical protein SORBIDRAFT_03g043450 [Sorghum bicolor]
 gi|241930939|gb|EES04084.1| hypothetical protein SORBIDRAFT_03g043450 [Sorghum bicolor]
          Length = 578

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 141/373 (37%), Positives = 208/373 (55%), Gaps = 17/373 (4%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRA 68
           A+  +G+V+PTPIQ +  P+ L+  D+ GIAQTG+GKT S++LP L        LE+G  
Sbjct: 173 AIAKSGFVEPTPIQSQGWPMALKGRDLIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQGDG 232

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
               P  LIL PTRELA Q+ +   K+G         + GG P   Q + L RG +++I 
Sbjct: 233 ----PIVLILAPTRELAVQIQEESTKFGSYSRTRSTCVYGGAPKGPQIRDLRRGVEIVIA 288

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR++D    G   +  +  LV+DEADRMLDMGF P I+ I + +   RQTL +SAT  
Sbjct: 289 TPGRLIDMLEAGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWP 348

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTA-ETIEHC--FVATYAQYSKKCALLQQLLQSQDTM 245
            E++ ++  FLQNP ++ + +P   A  +I+     ++ + +Y +   LL  L+     +
Sbjct: 349 REVEALARQFLQNPYKVTIGSPELKANHSIQQIVEVISDHEKYPRLSKLLSDLMDGSRIL 408

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
               IF   KK+   +   L   G+   +IHG+  Q  R  +L+ FK G   +M A+D+A
Sbjct: 409 ----IFFQTKKDCDKITRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDVA 464

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARGLD+ D+  V N+D P   E+YIHRIGRTGRAG  G AFT     + K    + K++ 
Sbjct: 465 ARGLDVKDIKCVINYDFPTTLEDYIHRIGRTGRAGASGTAFTFFTHANAKFSRNLVKILR 524

Query: 366 KKVDWLNGDLSSL 378
           +    +N  L S+
Sbjct: 525 EAGQAVNPALESM 537


>gi|167625006|ref|YP_001675300.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167355028|gb|ABZ77641.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 474

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 220/379 (58%), Gaps = 20/379 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F    L PK++ AV   GY + T +Q + +P+ ++  D+   AQTGTGKTA+F LP+L
Sbjct: 30  MNFDAFDLHPKILDAVSARGYQQLTQVQSQVLPVAMEGKDIMACAQTGTGKTAAFALPLL 89

Query: 61  TIL-------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
             L              + +++V++   L+L PTRELA QVADN   Y +        + 
Sbjct: 90  NRLIQEYNLFTEGDLEPEHQSKVKV---LVLTPTRELAIQVADNISAYAQFLPFKTTAVY 146

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q K L+ G D+L+ TPGR+ DH  +  L ++N+  LV+DEADRMLD+GF+  I
Sbjct: 147 GGSNMNPQRKALQAGVDILVATPGRLFDHIGQFGLDLSNVTHLVVDEADRMLDLGFVRDI 206

Query: 168 QNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           + +  LV  T QTL FSAT ++ ++ ++E  L  P+ I V T ++ +   +  ++     
Sbjct: 207 EKVKKLVAATHQTLFFSATYSEAVKTLAEKMLLAPEWINVATSATASLITQEVYL---VD 263

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             +K  LL +L+  ++  +  ++F + +++  +L   L+  G      HG   Q +R + 
Sbjct: 264 TRRKAELLSELI-GRNNWQQVLVFVSTRESAEHLHAELKLDGVKNAVFHGEKTQGARNRA 322

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L  FK G +++MVA+D+AARGLDI  +  V N ++P  AE+Y+HR+GRTGRAG  G+A +
Sbjct: 323 LDEFKSGKLRVMVATDVAARGLDIEALPLVINLELPFAAEDYVHRVGRTGRAGLAGRAIS 382

Query: 348 LVAKEDIKHIDAIEKLIEK 366
            V+ +D + +  IE LIE+
Sbjct: 383 FVSPQDREMLQEIELLIEQ 401


>gi|15668850|ref|NP_247653.1| DEAD-box ATP dependent DNA helicase [Methanocaldococcus jannaschii
           DSM 2661]
 gi|2500540|sp|Q58083|H669_METJA RecName: Full=Probable ATP-dependent RNA helicase MJ0669
 gi|1591383|gb|AAB98663.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 367

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 136/372 (36%), Positives = 227/372 (61%), Gaps = 14/372 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59
           M+F +L LS  ++ A+ + G+ KPT IQ+K IPL L   +++   A+TG+GKTASF +P+
Sbjct: 6   MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPL 65

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + ++ +          +IL PTRELA QVAD  E    N NL +A + GG     Q K L
Sbjct: 66  IELVNENNG----IEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            + A++++ TPGRILDH NRG L + N++  ++DEAD ML+MGFI  ++ I +     ++
Sbjct: 122 -KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  E+  +++ ++ +   I+    ++    IE  +V      +++   L +LL
Sbjct: 181 ILLFSATMPREILNLAKKYMGDYSFIKAKINAN----IEQSYVEV--NENERFEALCRLL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++++    G++FC  K++   L   L   GF   AIHG++ Q  R K++  FK+  I+++
Sbjct: 235 KNKEFY--GLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRIL 292

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+ +RG+D+ D+  V N+ +P   E+Y+HRIGRTGRAG+ GKA +++ + + K +  
Sbjct: 293 IATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRY 352

Query: 360 IEKLIEKKVDWL 371
           IE+ ++ K+  L
Sbjct: 353 IERAMKLKIKKL 364


>gi|281422387|ref|ZP_06253386.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
           DSM 18205]
 gi|281403550|gb|EFB34230.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
           DSM 18205]
          Length = 657

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 136/367 (37%), Positives = 221/367 (60%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+S ++  A+ + G+  P P+Q + IP +L  ++DV  +AQTGTGKTAS+ +P   
Sbjct: 4   FEELGVSEEIRRAIEELGFENPMPVQEEVIPYLLGNKNDVIALAQTGTGKTASYGIP--- 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
           +++K  A  +  + +IL PTREL  Q+AD+   + K  + L +A + GG    +Q + L+
Sbjct: 61  VIQKTDASSKQTQAVILSPTRELCLQIADDLNSFAKYIDGLHIAAVYGGTDIGSQIRTLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGR+LD  NRG   + N+  +V+DEAD ML+MGF   I  I   VP  R T
Sbjct: 121 HGVQIIVATPGRLLDLINRGVAQLENVNNVVLDEADEMLNMGFSESINAIFENVPEDRNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ +++K++ N+L + K I V + +  AE + H +    A+   K   L++++ 
Sbjct: 181 LLFSATMSKDIEKIALNYLHDHKEIVVGSRNEGAEHVNHIYYLVNAK--DKYLALKRVVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   IIFC  K    ++   L K G++  A+HG++ Q+ R   +  F+  T+Q +V
Sbjct: 239 FYPRI-FAIIFCRTKLETQDIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRNHTVQFLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+   +Y HR GRTGRAG+ G + +++   +   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDVASYTHRSGRTGRAGKKGTSISIIHTREKFKVRQI 357

Query: 361 EKLIEKK 367
           EK I K+
Sbjct: 358 EKQIGKE 364


>gi|145634582|ref|ZP_01790291.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
 gi|229844418|ref|ZP_04464558.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 6P18H1]
 gi|145268127|gb|EDK08122.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
 gi|229812667|gb|EEP48356.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 6P18H1]
          Length = 439

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 136/383 (35%), Positives = 214/383 (55%), Gaps = 6/383 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP L  
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++        
Sbjct: 66  LLDYPRRKPGSPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QTL
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  EL    +E  L +P +++        + I   +    +    K  LL + ++
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++  + GI+F  ++++   L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 245 TEEVTR-GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381
           ++  E+  K   L G      PP
Sbjct: 364 KRYTEEILKARILAGLEPRTKPP 386


>gi|325963995|ref|YP_004241901.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470082|gb|ADX73767.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 564

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 137/400 (34%), Positives = 221/400 (55%), Gaps = 9/400 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  +   +V ++ DAG   P PIQ  T+P+ L  HD+ G A+TGTGKT  F +P L  
Sbjct: 39  FADFNVRADIVESLADAGITHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGIPALQR 98

Query: 63  L----EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    + G  ++ +P   + L++ PTRELA QVA++ +   +  N  +A + GG  +E Q
Sbjct: 99  VVGRDDAGYEKLAVPGAPQALVIVPTRELAVQVANDLQTASRKRNARIATIYGGRAYEPQ 158

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L+ G +V++ TPGR++D + +  L + N++++++DEAD MLD+GF+P ++ + +  P
Sbjct: 159 VEALKNGVEVVVGTPGRLIDLYKQKHLSLKNVKVVILDEADEMLDLGFLPDVETLIAATP 218

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234
             RQTLLFSATM   +  ++  ++  P  I    P     T        Y  +S  K  +
Sbjct: 219 AVRQTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDEGLTKRDIRQLIYRAHSMDKIEV 278

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + ++LQ++   +  IIF   K+    +   L  +GF+  AIHG++ Q +R + L  F+  
Sbjct: 279 VARILQAKGRGRT-IIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRNN 337

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+      + Y+HR+GRTGRAG  G A T V  +D+
Sbjct: 338 KVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWDDM 397

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
                I K +   V       SS     E +DI +    R
Sbjct: 398 PRWGLINKALGLSVPEPIETYSSSPHLYEDLDIPEGTKGR 437


>gi|270158633|ref|ZP_06187290.1| ATP-independent RNA helicase DbpA [Legionella longbeachae D-4968]
 gi|289166549|ref|YP_003456687.1| ATP-dependent RNA helicase [Legionella longbeachae NSW150]
 gi|269990658|gb|EEZ96912.1| ATP-independent RNA helicase DbpA [Legionella longbeachae D-4968]
 gi|288859722|emb|CBJ13695.1| putative ATP-dependent RNA helicase [Legionella longbeachae NSW150]
          Length = 470

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 143/373 (38%), Positives = 224/373 (60%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ L L  +++ ++  A Y   TPIQ +++P++L+  D+   AQTG+GKTA+F L +L
Sbjct: 11  ISFSSLPLRQELIKSLASANYENMTPIQTQSLPIILKNQDIIAQAQTGSGKTAAFALSLL 70

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L+     V+    L+L PTRELA QV+    +      N+ +  L GGIP + Q   L
Sbjct: 71  NNLKISFFAVQ---GLVLCPTRELAEQVSQAIRRLACLMPNVKIINLSGGIPMKPQLDSL 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA +++ TPGRIL H   G L ++ ++ LV+DEADRMLDMGF   +++I S+ P  RQ
Sbjct: 128 RHGAHLIVGTPGRILKHLKNGSLDLSQLKALVLDEADRMLDMGFFDDMKSIISVCPKQRQ 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +E++++S+ F+ NP+ I V +P+      E+ +  T  + ++K  LL+ LL
Sbjct: 188 TLLFSATYPEEIKQISKQFMNNPQEIRVESPAEEINIEEYFYEVT--KQAQKFPLLKSLL 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   +IFCN ++  V +   L ++GFS  A++G+++Q  R   +  F   +  ++
Sbjct: 246 LHYRPVST-LIFCNTRQQTVEVTDLLIEEGFSAIALNGDMEQVDRDLAVLRFANHSCSIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++  V NFD+    E +IHRIGRTGRAG  G A ++    D + I A
Sbjct: 305 VATDVAARGLDIKELSTVINFDLAFDHEVHIHRIGRTGRAGCKGIALSITTPADAQRICA 364

Query: 360 IEKLIEKKVDWLN 372
           IE  +   ++W N
Sbjct: 365 IEDNMPHPINWGN 377


>gi|322794838|gb|EFZ17785.1| hypothetical protein SINV_13785 [Solenopsis invicta]
          Length = 586

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 155/395 (39%), Positives = 222/395 (56%), Gaps = 27/395 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F ++ L+  +  ++  AGY KPTP+Q   IP++++R DV   AQTG+GKTA+F++P+L  
Sbjct: 171 FDEVKLTEIIKNSIALAGYDKPTPVQKYAIPIIIERRDVMACAQTGSGKTAAFLVPILNQ 230

Query: 62  ILEKG-----------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           I E G             R + P  L+L PTRELA Q+ D   K+     +  A++ GG 
Sbjct: 231 IYESGPRPPPPQANSSSRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGGS 290

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L+RG  +L+ TPGR++D   RGK+ ++N   LV+DEADRMLDMGF P I+ I
Sbjct: 291 NIVDQMRELDRGCHLLVATPGRLVDMLGRGKIGLHNCRFLVLDEADRMLDMGFEPQIRRI 350

Query: 171 TSL--VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                +P T  RQTL+FSAT   E+Q ++ +FL N   + V    ST+E I    V  + 
Sbjct: 351 VQEDNMPPTGERQTLMFSATFPKEIQMLARDFLSNYIFLAVGRVGSTSENITQKIV--WV 408

Query: 227 QYSKKCALLQQLLQ----SQDTMKN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
           +   K + L  LLQ    S  T ++  ++F   KK    L   L   G+ V +IHG+  Q
Sbjct: 409 EEHDKRSYLLDLLQASNFSDPTAESLTLVFVETKKGADMLEEYLASMGYPVTSIHGDRTQ 468

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R R   L  F+ G   ++VA+ +AARGLDIP V HV NFD+P   E Y+HRIGRTGR G 
Sbjct: 469 REREDALRRFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGN 528

Query: 342 HGKAFTLVAKEDIKHI-DAIEKLIEKKVD---WLN 372
            G A +    ++   + D +  LIE   +   WL+
Sbjct: 529 LGLATSFFNHKNHNLVRDLVSLLIEANQELPSWLD 563


>gi|84393643|ref|ZP_00992394.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
 gi|84375711|gb|EAP92607.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
          Length = 436

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 145/383 (37%), Positives = 221/383 (57%), Gaps = 11/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P+V+  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADLDLLPQVIEGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L K     GR +   PR +I+ PTRELA Q+ ++ +   ++  +  AL  GG  ++ Q  
Sbjct: 71  LLKTPEHEGR-KPNQPRAIIMAPTRELAIQIYNDADSLVESTGIKAALAYGGESYDKQLG 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           K+E GAD+LI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KIEEGADILIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R  +LFSAT++  +Q+++   + NP+ + V     T   I+      Y     K ALL
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMHNPEHVVVEPERKTGHRIQEELF--YPSNEHKMALL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R KIL  F +G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + L+VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   ++   
Sbjct: 307 VDLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGESGHSISFACEDYAI 366

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
           ++  IE+ IE  +   + D S+L
Sbjct: 367 NLPPIEEYIEHAIPMSDYDASAL 389


>gi|116671331|ref|YP_832264.1| DEAD/DEAH box helicase domain-containing protein [Arthrobacter sp.
           FB24]
 gi|116611440|gb|ABK04164.1| DEAD/DEAH box helicase domain protein [Arthrobacter sp. FB24]
          Length = 585

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 140/401 (34%), Positives = 219/401 (54%), Gaps = 11/401 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  +   +V ++ DAG   P PIQ  T+P+ L  HD+ G A+TGTGKT  F +P L  
Sbjct: 39  FADYNVRADIVESLADAGITHPFPIQAMTLPVALAGHDIIGQAKTGTGKTLGFGIPALQR 98

Query: 63  LEKGR--------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           +  GR        A    P+ L++ PTRELA QVA + E   +  N  +A + GG  +E 
Sbjct: 99  V-VGRDDPGFDKLAVPGAPQALVIVPTRELAVQVAKDLENAARKRNARIATIYGGRAYEP 157

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L++G ++++ TPGR++D + +  L + N++I+++DEAD MLD+GF+P ++ + +  
Sbjct: 158 QVDSLQKGVEIVVGTPGRLIDLYKQKHLSLKNVKIVILDEADEMLDLGFLPDVETLIAGT 217

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCA 233
           P  RQTLLFSATM   +  ++  ++  P  I    P     T        Y  +S  K  
Sbjct: 218 PAVRQTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDEGLTKRDIRQLIYRAHSMDKIE 277

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           ++ ++LQ++   +  IIF   K+    +   L  +GF+  AIHG++ Q +R + L  F+ 
Sbjct: 278 VVARILQARGRGRT-IIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRN 336

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             + ++VA+D+AARG+D+ DV HV N+      + Y+HR+GRTGRAG  G A T V  +D
Sbjct: 337 NKVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWDD 396

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           +     I K +   V       SS     E++DI +    R
Sbjct: 397 MPRWGLINKALGLSVPEPVETYSSSPHLYEELDIPEGTKGR 437


>gi|195069886|ref|XP_001997052.1| GH22580 [Drosophila grimshawi]
 gi|193891570|gb|EDV90436.1| GH22580 [Drosophila grimshawi]
          Length = 793

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 144/379 (37%), Positives = 217/379 (57%), Gaps = 24/379 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F + G    V+  +   G+ KPT IQ + +P+ L   D+  +AQTG+GKT ++VLP +
Sbjct: 146 IEFEEGGFPDYVMNEIRKQGFTKPTAIQAQGMPIALSGRDLVAVAQTGSGKTLAYVLPAV 205

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA Q+     ++G N  +    + GG P   
Sbjct: 206 VHINNQPRLERGDG----PIALVLAPTRELAQQIQAVASEFGSNTQVRNTCIFGGAPKGQ 261

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 262 QARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 321

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYS 229
              RQ L++SAT   E+++++E FL N  ++ + + S +A     + ++ C        S
Sbjct: 322 RPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVC------DES 375

Query: 230 KKCALLQQLLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
           +K A L QLL   S +     IIF   KK V  +  ++ +QG+  CAIHG+  Q+ R  +
Sbjct: 376 EKIAKLVQLLTQISGENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFV 435

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           LS+F+ G   ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+T
Sbjct: 436 LSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYT 495

Query: 348 LVAKEDI-KHIDAIEKLIE 365
           L    +  K  D I+ L E
Sbjct: 496 LFTHSNANKANDLIQVLRE 514


>gi|89072528|ref|ZP_01159100.1| putative ATP-dependent RNA helicase SrmB [Photobacterium sp. SKA34]
 gi|89051632|gb|EAR57085.1| putative ATP-dependent RNA helicase SrmB [Photobacterium sp. SKA34]
          Length = 412

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 142/370 (38%), Positives = 215/370 (58%), Gaps = 7/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF++L L  +++ A+ + GY +PT +Q + IP  L   DV   A TGTGKTA+F+LPM+ 
Sbjct: 3   DFSELELDSELLRAIEEIGYSRPTVVQAQAIPHALDGKDVMASAPTGTGKTAAFLLPMIQ 62

Query: 62  ILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+   R R    R LIL PTRELA QVAD      K   L V  + GGI ++   + L 
Sbjct: 63  HLQDFPRKRPGPARILILTPTRELAIQVADQARALAKYTTLKVFTITGGISYDEHAEMLG 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR++++    K     +E L++DEADRMLDMGF   ++ +     + RQ+
Sbjct: 123 KTQDIVVATPGRLMEYIEAEKFDCRAVECLILDEADRMLDMGFGKIVERLNHECRWRRQS 182

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT+  + +++ SE  L  P  +EVN  PS       H           K ALL+ +
Sbjct: 183 LLFSATLEGKGVREFSETILNEP--VEVNADPSRRERKKIHQMYLRCDNMDHKLALLENI 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ Q   +  IIF   ++ +  L   LE  G     I G + Q +R  +++ F++G + +
Sbjct: 241 IKEQ--AERTIIFVKTRERLGILRGQLEAMGIPCNWIQGEMAQAARTNMITRFRDGVVNV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+PDV HV NFD+P  AE Y+HRIGRT RAG+ G A +LV   D   I+
Sbjct: 299 LIATDVAARGIDLPDVSHVINFDLPRTAEVYVHRIGRTARAGKKGTAISLVEAHDQNMIE 358

Query: 359 AIEKLIEKKV 368
            I + ++++V
Sbjct: 359 RISRYMKEEV 368


>gi|256379849|ref|YP_003103509.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
 gi|255924152|gb|ACU39663.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
          Length = 501

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 133/358 (37%), Positives = 202/358 (56%), Gaps = 5/358 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL+ ++V A+  AG  +P PIQ  T+P  L   D+ G  QTG+GKT +F L +L+ 
Sbjct: 56  FSELGLADELVRALATAGITEPFPIQAATLPDSLAGRDLLGRGQTGSGKTLAFGLALLSR 115

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  GRA+  MPR L+L PTRELA QV +    + +   L    ++GG  F  Q   L RG
Sbjct: 116 LAGGRAKPHMPRALVLVPTRELAMQVEEALSPFARALGLWCRTVVGGTSFPRQIDALRRG 175

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI TPGR+ DH  +G   ++ +    +DEAD+M DMGF+P ++ I  L P   Q LL
Sbjct: 176 VDLLIATPGRLSDHVRQGTADLSEVMFTALDEADQMADMGFMPQVRAILDLTPENGQRLL 235

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  ++ K+   +L +P    V  P+ +  T+EH  +   A+  K+  + +   +  
Sbjct: 236 FSATLDGDVDKLVRQYLHDPVVHSVAPPTGSVTTMEHHLLFVSAE-DKQSVVTEVAAREG 294

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T    I+F   K +V  L   L   G    A+HG   Q +R ++L  F+EGT  +++A+
Sbjct: 295 RT----IMFVRTKHHVDRLAKKLRSMGVHAGALHGGKAQSARTRVLGQFREGTTPVLIAT 350

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           D+AARG+ + DV  V + D P   ++Y+HR GRT RAG+ G   TLV  +  + +  +
Sbjct: 351 DVAARGIHVDDVSLVVHVDPPADPKDYLHRAGRTARAGQSGTVVTLVTHDQRRAVQGL 408


>gi|54297986|ref|YP_124355.1| ATP-dependent RNA helicase DbpA [Legionella pneumophila str. Paris]
 gi|53751771|emb|CAH13194.1| hypothetical protein lpp2042 [Legionella pneumophila str. Paris]
          Length = 468

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 141/373 (37%), Positives = 224/373 (60%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L  +++ ++  + Y   TPIQ++++P++L+  D+   A+TG+GKTA+F L +L
Sbjct: 11  LSFSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDIIAQAKTGSGKTAAFALCLL 70

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L+     V+    L+L PTRELA QV+    +      N+ +  L GGIP + Q   L
Sbjct: 71  NNLKISFFAVQ---ALVLCPTRELAEQVSQAIRRLACLMPNVKIINLSGGIPMQPQLDSL 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA +++ TPGRIL H     L ++ ++ LV+DEADRMLDMGF   I+NI S+ P  RQ
Sbjct: 128 RHGAHIIVGTPGRILKHLKNASLDLSQVKALVLDEADRMLDMGFFDDIKNIISVCPKQRQ 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +E++++S+ F+++PK + V TP    +  +H +    +++++K  LL+ LL
Sbjct: 188 TLLFSATYPEEIKRLSKQFMKDPKEVHVVTPPEEIDIEQHFY--EVSRHAQKFPLLKSLL 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                + + +IFCN K+  V +   L  +GFS  A++G+++Q  R   +  F   +  ++
Sbjct: 246 LHYRPV-SVLIFCNTKQQTVEVTDQLINEGFSAIALNGDMEQVERDLAVLRFANQSCSIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++  V NFD+    + +IHRIGRTGRAG  G A ++V   D + I A
Sbjct: 305 VATDVAARGLDIKELSAVINFDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPADAQRICA 364

Query: 360 IEKLIEKKVDWLN 372
           IE      + W N
Sbjct: 365 IEDNYPHPIHWGN 377


>gi|328470391|gb|EGF41302.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus 10329]
          Length = 416

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 149/370 (40%), Positives = 219/370 (59%), Gaps = 19/370 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADLGL P +V  +    Y +PTPIQ   IP VL   D+ G A TG+GKTA+F LP+L  
Sbjct: 10  FADLGLIPTLVERLEALEYNQPTPIQSHAIPHVLDGRDMIGGANTGSGKTAAFSLPILQK 69

Query: 62  ILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-----TVALLIGGIPFE 113
           IL++G +   R      LIL PTRELA+QVA N + Y  +Y+L     TVA+  GG+   
Sbjct: 70  ILQQGESNDRRGNFVSHLILVPTRELASQVAYNVKSY--SYHLRDKIKTVAVF-GGVSVN 126

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  G D+++ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  I +L
Sbjct: 127 PQMLALRGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILAL 186

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKC 232
           +P  +QTLLFSAT  +++  ++++ L +P  +EV   S+ A T ++  F     +   K 
Sbjct: 187 LPEKKQTLLFSATFPEKVTTLAQHLLNDP--VEVQLQSAEASTLVQRVFSVNKGE---KT 241

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           A+L  L++     +  +IF N K    +L   L K+G +    HG+  Q +R ++L  FK
Sbjct: 242 AVLAHLIKKHQ-WRQILIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFK 300

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G IQ+++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G   +L+  +
Sbjct: 301 SGEIQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYD 360

Query: 353 DIKHIDAIEK 362
           D  H   IEK
Sbjct: 361 DYHHFKVIEK 370


>gi|109896916|ref|YP_660171.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas atlantica T6c]
 gi|109699197|gb|ABG39117.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas atlantica T6c]
          Length = 459

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 215/371 (57%), Gaps = 10/371 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ LGL   ++  +   G+ + T IQ  T+P +L+  DV   A+TG+GKTA+F L +L 
Sbjct: 4   EFSSLGLEAALLDNLQSMGFSQMTEIQAGTLPAILEGRDVVAKAKTGSGKTAAFGLALLH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            L+  R RV+    L++ PTRELA QVA    + G+  +N+ V  L GG P   Q   LE
Sbjct: 64  NLDVKRFRVQ---ALVMCPTRELAEQVALEIRRLGRGIHNIKVLTLCGGTPMGPQIGSLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRI+DH  + +L ++ +  LV+DEADRMLDMGF   +  +   VP  RQT
Sbjct: 121 HGAHIIVGTPGRIMDHLYKRRLDLSEVNTLVLDEADRMLDMGFEDEMDAVIKSVPEQRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLL 239
           LLFSAT  D +  +S    ++P  + V +   T +TIE  F     A  +K  A L    
Sbjct: 181 LLFSATYPDSIAAISGQVQKSPLEVTVESTHDT-DTIEQVFFEVEDAHRTKAVAALLSHY 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q +    + I+FCN K     +   L+  G SV A+HG+++QR R ++L  F   +  ++
Sbjct: 240 QPE----SAIVFCNTKIACQEVADELQSMGVSVLALHGDLEQRERNQVLVRFANKSASVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI +V  V ++ +    E +IHRIGRTGRA   G A TLVA +++   +A
Sbjct: 296 VATDVASRGLDIKEVNAVISYHITPDPEVHIHRIGRTGRAESKGVALTLVAPDEMARANA 355

Query: 360 IEKLIEKKVDW 370
           IE   + K+ W
Sbjct: 356 IEDYQKAKLKW 366


>gi|156391217|ref|XP_001635665.1| predicted protein [Nematostella vectensis]
 gi|156222761|gb|EDO43602.1| predicted protein [Nematostella vectensis]
          Length = 777

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 138/375 (36%), Positives = 210/375 (56%), Gaps = 34/375 (9%)

Query: 10  PKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL----- 63
           P  +  ++D  GY  PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F +P+L  +     
Sbjct: 358 PDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFAIPLLVWIMGLPK 417

Query: 64  -EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E+     + P  LIL PTRELA Q+ +   K+G+   +    +IGG+  E Q  +L  G
Sbjct: 418 IERDNDADQGPYALILAPTRELAQQIEEEILKFGRPLGIRTVSVIGGLSREDQGFQLRLG 477

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177
            +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P +     
Sbjct: 478 VEIVIATPGRLIDVLENRYLVLNRCSYIVMDEADRMIDMGFEPEVQKILEHLPVSNVKPD 537

Query: 178 -------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
                              RQT++F+ATM  +++++++N+L+ P  + + +     E +E
Sbjct: 538 SEDSEDPEHLLTHMGKDKYRQTVMFTATMPPQVERLAKNYLRRPAVVYIGSVGKPVERVE 597

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
                   Q  +K  L  +LL ++D     IIF NQKK    L  SLEK GF    +HG 
Sbjct: 598 QRVYLVNEQQKRKKLL--ELL-NKDLEPPIIIFVNQKKGADVLAKSLEKMGFRATTLHGG 654

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
            +Q  R   LS+ K G+  ++VA+D+A RG+DI DV HV N+D+    E+Y HRIGRTGR
Sbjct: 655 RNQEQREFALSSLKGGSKDILVATDVAGRGIDIKDVSHVINYDMAKTIEDYTHRIGRTGR 714

Query: 339 AGRHGKAFTLVAKED 353
           AG+ G A + + + D
Sbjct: 715 AGKTGIAVSFLTQSD 729


>gi|237786051|ref|YP_002906756.1| putative ATP-dependent RNA helicase [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237758963|gb|ACR18213.1| putative ATP-dependent RNA helicase [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 558

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 156/442 (35%), Positives = 250/442 (56%), Gaps = 24/442 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG++ ++V A+ + G      IQ  T+PL L   D+ G A+TG GKT ++ +P+L  
Sbjct: 94  FEELGVAAEIVDALAEHGITHTFAIQELTLPLALDGKDLIGQARTGMGKTLAYGVPLLDR 153

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNF---EKYGKNYN-----LTVALLIGGIP 111
           +    A   +   PR L++ PTRELA QVAD+     ++  N+N     L V  + GG P
Sbjct: 154 IFDDAAIPELDGTPRALVVAPTRELAYQVADDLTLAARHLANFNEEHRSLRVTTICGGHP 213

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           FE Q  +L  G D ++ TPGR+LD     +L ++++ +LV+DEAD MLD+GF+P I+ I 
Sbjct: 214 FEKQIAQLREGTDCIVGTPGRLLDLCKNRELNLSHVAVLVLDEADEMLDLGFLPDIEKIL 273

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
             VP  RQT+LFSATM   +  ++  F+  P  I       +        VA       K
Sbjct: 274 QQVPEKRQTILFSATMPAPIMALARTFMNKPVHIRAEGTDDSTTHTTTKQVAFKNHKLNK 333

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
            A L  +LQ+ +  +  IIF   K++  ++   L ++GF V A+HG++ Q +R K L+ F
Sbjct: 334 LATLSAILQAHNRGRT-IIFTRTKRSAADVADDLAQRGFLVGAVHGDMAQPAREKSLNAF 392

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +   I+++VA+D+AARG+D+ DV HV N+ VP+ A  Y+HRIGRTGRAG  G A TLV  
Sbjct: 393 RSKKIEILVATDVAARGIDVDDVTHVINYQVPDDAMTYVHRIGRTGRAGHTGTAVTLVGW 452

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLS---SLNPPL-EKIDIAQHNHAR--KNNPIPQKSTG 405
           +++       K+I+ ++D   G+L    S +P L E +DI    + R  ++ P+   +  
Sbjct: 453 DEVTKW----KVIDDELDLNIGELDEWFSTSPELREALDIPDDVNERVGESRPVYGGAKA 508

Query: 406 FDRRKKNYSSQKSHIPLKESEK 427
              ++K  S++++  P +++ +
Sbjct: 509 LSPQRK--SAKRASRPRRDNRR 528


>gi|255572963|ref|XP_002527412.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223533222|gb|EEF34978.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 505

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 139/391 (35%), Positives = 217/391 (55%), Gaps = 20/391 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+G    V+  V  AG+V+PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP +  
Sbjct: 101 FRDVGFPDYVLEEVTRAGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 160

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                IL  G      P  L+L PTRELA Q+     K+G +  +    + GG+P   Q 
Sbjct: 161 VNAQPILAPGDG----PIVLVLAPTRELAVQIQQEATKFGASSRIKNTCIYGGVPKGPQV 216

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L++G +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 217 RDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRP 276

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHC-FVATYAQYSKKCA 233
            RQTL +SAT   E+++++  FL NP ++ + +    A     +H   V+   +Y+K   
Sbjct: 277 DRQTLYWSATWPKEVEQLARQFLYNPYKVVIGSADLKANHAIRQHVDIVSENQKYNKLVK 336

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL+ ++     +    IF + KK    +   L   G+   +IHG+  Q  R  +LS FK 
Sbjct: 337 LLEDIMDGSRIL----IFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA 392

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +M A+D+AARGLD+ DV  V N+D P   E+Y+HRIGRTGRAG  G A+T     +
Sbjct: 393 GKSPIMTATDVAARGLDVKDVKFVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTASN 452

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN---PP 381
            +    +  ++E+    ++ +L+++    PP
Sbjct: 453 ARFAKELISILEEAGQKVSPELAAMGRGAPP 483


>gi|195439780|ref|XP_002067737.1| GK12550 [Drosophila willistoni]
 gi|194163822|gb|EDW78723.1| GK12550 [Drosophila willistoni]
          Length = 800

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 145/402 (36%), Positives = 222/402 (55%), Gaps = 20/402 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ KPT IQ +  P+ L   D+ G+AQTG+GKT +++LP +  
Sbjct: 136 FEEGGFPDYVMNEVRKQGFAKPTAIQAQGWPIALSGRDLVGVAQTGSGKTLAYILPAVVH 195

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  L+L PTRELA Q+     ++G N  +    + GG P   Q 
Sbjct: 196 INNQPRLERGDG----PIALVLAPTRELAQQIQQVASEFGSNTQVRNTCIFGGAPKGQQA 251

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + LERG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +  
Sbjct: 252 RDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRP 311

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ L++SAT   E+++++E FL N  ++ + + S +A       V    +  K   L+ 
Sbjct: 312 DRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNIRQIVDVCDESEKIVKLIN 371

Query: 237 QLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L   S ++    IIF   KK V  +  ++ +QG+  CAIHG+  Q+ R  +LS+F+ G 
Sbjct: 372 LLTDISAESETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGR 431

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI- 354
             ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    +  
Sbjct: 432 HSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNAN 491

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
           K  D I+ L E           ++NP L  + ++   + ++N
Sbjct: 492 KANDLIQVLREAN--------QTINPKLMNMAMSGGGYQKRN 525


>gi|153950343|ref|YP_001400107.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis IP
           31758]
 gi|170023425|ref|YP_001719930.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis YPIII]
 gi|152961838|gb|ABS49299.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis IP
           31758]
 gi|169749959|gb|ACA67477.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           YPIII]
          Length = 441

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 139/354 (39%), Positives = 203/354 (57%), Gaps = 4/354 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP L 
Sbjct: 5   NFSELDLDERLIDALRDKGYERPTAIQASAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K   L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKYTQLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ T GR+L +          +E L++DEADRMLDMGF   I+ I++   + +QT
Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQT 184

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+  E +++ +E  L  P  +E +      + I+  +         K ALL  LL
Sbjct: 185 LLFSATLEGEAIREFAERILNEPVELEADPSRRERKKIQQWYYRA-DDIKHKTALLCHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  K+ IIF   ++ V  L   L + G +   + G + Q  R + +    +G + ++
Sbjct: 244 KQPDVSKS-IIFVRTRERVHELVSWLREAGINAWFLEGEMVQAKRTEAVIRLGDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+A+RGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D
Sbjct: 303 VATDIASRGLDIDDISHVFNFDMPRTADVYLHRIGRTGRAGRKGVAISLVEAHD 356


>gi|197285752|ref|YP_002151624.1| ATP-dependent RNA helicase SrmB [Proteus mirabilis HI4320]
 gi|227356264|ref|ZP_03840653.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
 gi|194683239|emb|CAR43939.1| ATP-dependent RNA helicase [Proteus mirabilis HI4320]
 gi|227163728|gb|EEI48644.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
          Length = 451

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 137/371 (36%), Positives = 213/371 (57%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+ L L   ++ A+ + GY +PT IQ + IP  ++  D+ G A TGTGKTA+F+LP +  
Sbjct: 6   FSSLELDESLLTALEEKGYQRPTAIQAEAIPAAMEGRDILGSAPTGTGKTAAFLLPAIQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVAD  ++   + +L +A + GG+ +    +    
Sbjct: 66  LLDYPRKKSGPPRVLILTPTRELAMQVADQAKELCAHTHLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          +E+L++DEADRMLDMGF   I+ I     + +QTL
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVEMLILDEADRMLDMGFANDIETIAGETRWRKQTL 185

Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LFSAT+  + +   ++  L  P  +E+N  PS         F         K ALL  LL
Sbjct: 186 LFSATLEGNAVIDFAQRILNEP--VELNADPSRRERKKIQQFYYHADNLDHKTALLAHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+ +K  I+F  +++ V  L  +LEKQG     + G + Q  R + +   + G + ++
Sbjct: 244 K-QEEVKKSIVFVRKRERVRELAAALEKQGIKASYLEGEMAQTQRNEAIKRVESGKMHVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 IATDVASRGLDLEDITHVFNFDLPRTADVYLHRIGRTGRAGRKGTAISLVEAHDYPLLGK 362

Query: 360 IEKLIEKKVDW 370
           I + I++ + +
Sbjct: 363 ISRYIQEPIKY 373


>gi|156837514|ref|XP_001642781.1| hypothetical protein Kpol_1005p11 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160358661|sp|A7TS37|RRP3_VANPO RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|156113348|gb|EDO14923.1| hypothetical protein Kpol_1005p11 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 506

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 146/378 (38%), Positives = 217/378 (57%), Gaps = 28/378 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L P+++ A  +  + KPTPIQ ++IP  LQ HD+ G+AQTG+GKTA+F +P+L  
Sbjct: 88  FSDLDLVPELIEACKNLNFAKPTPIQARSIPPALQGHDIIGLAQTGSGKTAAFAIPILNR 147

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +         IL PTRELA Q+ + F+  G    +  A ++GG+    Q + L R 
Sbjct: 148 LWHDQQPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSACIVGGMNMMDQARDLMRK 204

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180
             ++I TPGR++DH  N     +  ++ LV+DEADR+LDM F P +  I  ++P   R T
Sbjct: 205 PHIIIATPGRLMDHLENTRGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQGRTT 264

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-------TYAQYSKKCA 233
            LFSATMT ++ K+    L NP +  V+    T +T+    +        TY  Y     
Sbjct: 265 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGLKNTYLIY----- 319

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
                L ++   K  I+F   K N   +  L + LE   FS  A+HG+++Q  R   L  
Sbjct: 320 -----LMNEFIGKTIIVFTRTKANAERITTLANLLE---FSATALHGDLNQNQRTGSLDL 371

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV+
Sbjct: 372 FKAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 431

Query: 351 KEDIKHIDAIEKLIEKKV 368
           + D++ I  IE ++ KK+
Sbjct: 432 QYDLELILRIEDVLGKKL 449


>gi|254302223|ref|ZP_04969581.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322415|gb|EDK87665.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 529

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 215/372 (57%), Gaps = 16/372 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F +LGLS KV+  +   GY  PTPIQ  TIP +L+   D+ G AQTGTGKTA+F LP++
Sbjct: 9   EFRELGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E     +   + ++L PTRELA QVA+       +  + V  + GG   + Q K ++
Sbjct: 69  ENFE----NLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR++D   R  L +N+++  ++DEAD ML+MGF+  I+ I +     ++ 
Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
           L FSATM DE+ KV++  ++  + + V +   T +  E  +  V    ++   C ++   
Sbjct: 185 LFFSATMPDEIMKVAKTHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRII--- 241

Query: 239 LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               D  K   GIIFC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I
Sbjct: 242 ----DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKI 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T +  ++ + 
Sbjct: 298 NILVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRR 357

Query: 357 IDAIEKLIEKKV 368
           +  I+K ++K++
Sbjct: 358 LLQIQKAVKKEI 369


>gi|84625712|ref|YP_453084.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|161898959|ref|YP_202940.2| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188574752|ref|YP_001911681.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|67461243|sp|Q5GUR8|RHLB_XANOR RecName: Full=ATP-dependent RNA helicase rhlB
 gi|84369652|dbj|BAE70810.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519204|gb|ACD57149.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 574

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 139/373 (37%), Positives = 224/373 (60%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L P +V  +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++  
Sbjct: 11  FSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNR 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q + 
Sbjct: 71  LLNRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL 130

Query: 119 LERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           L++G DV+I TPGR++D+  + K++ ++  EI V+DEADRM D+GFI  I+ +   +P  
Sbjct: 131 LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER 190

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            TRQTLLFSAT++  + +++   +  P+++ V T + TA  +       +    +K  LL
Sbjct: 191 GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIY--FPSDDEKQTLL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL   +  +  ++F N K  V  +  +LE+ G+ V  + G++ Q+ R  +L+ F++G 
Sbjct: 249 LGLLSRSEGART-MVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367

Query: 356 HIDAIEKLIEKKV 368
            +  IE  IE+K+
Sbjct: 368 SLPDIEAYIEQKI 380


>gi|311279320|ref|YP_003941551.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308748515|gb|ADO48267.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
          Length = 457

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 139/352 (39%), Positives = 208/352 (59%), Gaps = 8/352 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY   TP+Q  T+P +L   DV   A+TG+GKTA+F L +L  ++   A   + ++L+L 
Sbjct: 22  GYQTMTPVQAATLPAILAGKDVRAQAKTGSGKTAAFGLGLLQHID---ASQFITQSLVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    K  +   N+ V  L GG+PF  Q   L     +++ TPGR+LDH  
Sbjct: 79  PTRELADQVASALRKLARFMPNIKVLTLCGGLPFSVQRDSLTHAPHIIVATPGRLLDHLK 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +  + ++ ++ LV+DEADRMLDMGF   +  + +  P  RQTLLFSAT   E+  +S   
Sbjct: 139 KETVSLDALQTLVLDEADRMLDMGFADALDEVIAWAPEKRQTLLFSATWPAEIAAISRRI 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            ++P  IE++T       +E  F       S K  LLQ LL SQ    + ++FCN KK+ 
Sbjct: 199 QRDPLTIEIDTVDEL-PAVEQRFYEV--SRSGKIGLLQTLL-SQHQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L     SV A+HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QAVCDALSDSNQSVLALHGDMEQRDRDQTLVRFANGSSRVLVATDVAARGLDIKALEMVI 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           N+++    E ++HRIGRT RAG  G A +L A E+ +  +A+E+++  K+DW
Sbjct: 315 NYELSWDPEVHVHRIGRTARAGERGLAISLCAPEEAQRANALEEMLNVKLDW 366


>gi|165977454|ref|YP_001653047.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165877555|gb|ABY70603.1| ATP-dependent RNA helicase protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 449

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 214/368 (58%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P+++ A+   GY +PT +Q +TIP  L   D+ G A TGTGKTA+F+LP +
Sbjct: 8   MTFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAI 67

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QV++  + + +   L++A + GG+ ++   +  
Sbjct: 68  QHLLDYPRRKPGAPRILILTPTRELAMQVSEEAQAFAEFTKLSIATITGGVAYQNHGEVF 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR++ +          +EIL+ DEADRML MGF    + I +   + + 
Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187

Query: 180 TLLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           T LFSAT+  EL    ++  L NP +I+        + I+  +         K  LL +L
Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHA-DNLEHKTKLLARL 246

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + + + M+  I+F  ++++V  L  +L K+G     + G++ Q  R + ++  KEG + +
Sbjct: 247 ISTME-MEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKEGVVNV 305

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI DV +V NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D K + 
Sbjct: 306 LVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLG 365

Query: 359 AIEKLIEK 366
            I++  E+
Sbjct: 366 KIKRYTEE 373


>gi|58428518|gb|AAW77555.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 647

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 139/373 (37%), Positives = 224/373 (60%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L P +V  +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++  
Sbjct: 84  FSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNR 143

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q + 
Sbjct: 144 LLNRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL 203

Query: 119 LERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           L++G DV+I TPGR++D+  + K++ ++  EI V+DEADRM D+GFI  I+ +   +P  
Sbjct: 204 LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER 263

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            TRQTLLFSAT++  + +++   +  P+++ V T + TA  +       +    +K  LL
Sbjct: 264 GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIY--FPSDDEKQTLL 321

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL   +  +  ++F N K  V  +  +LE+ G+ V  + G++ Q+ R  +L+ F++G 
Sbjct: 322 LGLLSRSEGART-MVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 380

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 381 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 440

Query: 356 HIDAIEKLIEKKV 368
            +  IE  IE+K+
Sbjct: 441 SLPDIEAYIEQKI 453


>gi|317051368|ref|YP_004112484.1| DEAD/DEAH box helicase domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316946452|gb|ADU65928.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum
           S5]
          Length = 488

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 213/369 (57%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61
           F  LGLS + + A+ + G+ KPT IQ   IPLVL +H DV G AQTGTGKTA+F LP++ 
Sbjct: 10  FESLGLSAQTLQALREKGFEKPTSIQKACIPLVLHQHVDVVGQAQTGTGKTAAFGLPIIE 69

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  R   R  + LIL PTRELA QVAD       +  L +A L GG     Q +KL R
Sbjct: 70  TVKPER---RQIQALILTPTRELALQVADEITSLCGSMKLDIATLYGGQSIGLQIQKLRR 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  + + TPGRI D  +RG L ++++E +V+DEAD ML+MGFI  I+NI    P  ++ L
Sbjct: 127 GVHIAVGTPGRIQDLIDRGNLDLSHLEYVVLDEADEMLNMGFIEDIENILQHTPAEKRML 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +  +++ ++   + +       T    +  +        ++    + L + 
Sbjct: 187 LFSATMPRPILNLAKRYMSTYEHVVAEQTQKTTSLTDQIYYEV-----READKFEALCRV 241

Query: 242 QDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            D   +  G++FC  K +   +   L+ + +   A+HG++ Q  R KIL  F+   + ++
Sbjct: 242 IDITPDFYGVVFCRTKVDADEITRRLQHRKYVTEALHGDVSQNQREKILDAFRRKRLNIL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ ++ HV NF +P   E+Y+HR+GRTGRAG+ G A T ++  + + +  
Sbjct: 302 VATDVAARGIDVQNLTHVINFSLPQSPESYVHRVGRTGRAGKEGTAITFISPAEFRKLAF 361

Query: 360 IEKLIEKKV 368
           I+K+ +  +
Sbjct: 362 IQKITQTTI 370


>gi|145636310|ref|ZP_01791979.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
 gi|145270475|gb|EDK10409.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
          Length = 439

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 136/383 (35%), Positives = 214/383 (55%), Gaps = 6/383 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP L  
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R ++  PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++        
Sbjct: 66  LLDYPRRKLGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QTL
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  EL    +E  L +P +++        + I   +    +    K  LL + ++
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++  + GI+F  ++++   L   L K+G     + G + Q  R   +   K G + ++V
Sbjct: 245 TEEVTR-GIVFVRRREDARELSEILRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381
           ++  E+  K   L G      PP
Sbjct: 364 KRYTEEILKARILEGLEPRTKPP 386


>gi|320106012|ref|YP_004181602.1| DEAD/DEAH box helicase domain-containing protein [Terriglobus
           saanensis SP1PR4]
 gi|319924533|gb|ADV81608.1| DEAD/DEAH box helicase domain protein [Terriglobus saanensis
           SP1PR4]
          Length = 501

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 146/406 (35%), Positives = 215/406 (52%), Gaps = 36/406 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  +S K+   +    +V PTP+Q K IP  L+  DV   A TGTGKT SF++PM+
Sbjct: 31  VQFNDFNISEKLKQRLAANNFVNPTPVQAKAIPPALEGRDVLATAATGTGKTLSFLIPMI 90

Query: 61  TILEK---------------------GRAR----------VRMP-RTLILEPTRELAAQV 88
             ++                      GR R           R P R LIL PTRELA QV
Sbjct: 91  ERMDANPLAALVQQVAQEQAPQPPQYGRQRGGRNNPPPRGPRAPIRALILLPTRELAMQV 150

Query: 89  ADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIE 148
            D + K   N      L+ GG+   AQ   L RG  +++ TPGR+ D+  R ++ +NN+E
Sbjct: 151 LDAYAKIVPNAKQDSVLVCGGLSEGAQLDALRRGPRLVVATPGRLEDYLKRREINLNNVE 210

Query: 149 ILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN 208
           +LV+DE DRMLDMGF+P I+ I   +P TRQT+ +SAT+   + ++  +++ NP RI++ 
Sbjct: 211 MLVLDEVDRMLDMGFLPAIRRIVGALPKTRQTMCYSATLDANITEIVRDYVSNPIRIQIG 270

Query: 209 TPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
           T S   E +E    A      +K +LL QLL       + ++F   K     +   LEK 
Sbjct: 271 TTSKPNERVE--LRAFTVMQDQKLSLLDQLLGEH--AGSYLVFSRTKHGADRIAKKLEKL 326

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G     IHG+  Q  R   L +F  G  +++VA+D+AARG+DI  + HV N+D+PN +++
Sbjct: 327 GHETDVIHGDRSQSQRTAALKSFAMGRSRVLVATDVAARGIDIQHIAHVVNYDLPNGSDD 386

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
           ++HRIGRTGRA   G A T V  ++      +E+ ++    W   D
Sbjct: 387 FVHRIGRTGRASASGVATTFVMPQERSDARKLERELKISFKWAEAD 432


>gi|71747632|ref|XP_822871.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70832539|gb|EAN78043.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
          Length = 512

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 145/419 (34%), Positives = 246/419 (58%), Gaps = 12/419 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  +++ A  +AG+  PT IQ+ TIP+V +  D+ G+AQTG+GKT ++VLP++  
Sbjct: 42  FKSLGLCEELIGACKEAGWRMPTRIQVATIPVVSEGRDIIGVAQTGSGKTGAYVLPLVNW 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +A+V     L++ PTRELA QVA  F   G +  L VA L+GG     Q  +L R 
Sbjct: 102 LLT-QAKVPYLSILVMVPTRELAQQVAAQFVMLGSSVGLRVATLVGGADMVDQACELSRR 160

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             V++ TPGR+ DH N  K   +  +  LV+DEAD+ML+M +   I  I   +P  RQTL
Sbjct: 161 PHVVVGTPGRVKDHLNNTKGFQLVKLHALVLDEADKMLEMDYEKEINAILEHLPHNRQTL 220

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT++ ++ ++    L +P  +EV+  ++T +T++  +V  +A +++    L   L +
Sbjct: 221 LFSATLSTKIDRLQNASLNDPVLLEVHRKNTTVDTLKQYYV--FAPFAQMLPYLHLYL-T 277

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +++  + ++FC     V  +  +L   G     + G +DQ++R   L+ FKEG ++++V 
Sbjct: 278 RESGNHILVFCRSAALVHRITLTLRVLGHQALPLMGRMDQKNRNIALTKFKEGRVRILVC 337

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A RGLDIP    V NF +P+R E+YIHR+GRT RAG  GKA  ++++ DI  +  +E
Sbjct: 338 TDVAQRGLDIPRTDVVVNFALPDRVEDYIHRVGRTARAGAQGKAVNIISQYDIVLLQKVE 397

Query: 362 KLIEKKV-DW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
                K  +W   +GD++++   L++++ A+    ++     Q++  F+R  +  ++ +
Sbjct: 398 ASTGVKCEEWPISDGDVAAV---LQRVEDAEQEAVKEMRESDQEAK-FEREARQLTTAR 452


>gi|258577027|ref|XP_002542695.1| ATP-dependent RNA helicase p62 [Uncinocarpus reesii 1704]
 gi|237902961|gb|EEP77362.1| ATP-dependent RNA helicase p62 [Uncinocarpus reesii 1704]
          Length = 1336

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 138/373 (36%), Positives = 210/373 (56%), Gaps = 12/373 (3%)

Query: 3    FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
            F + G    V+  V   G+ KPTPIQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 921  FDEAGFPQYVISEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 980

Query: 62   -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 981  INAQPLLAPGDG----PIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPRGPQI 1036

Query: 117  KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            + L RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 1037 RDLARGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 1096

Query: 177  TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             RQT ++SAT   E+++++ +FL +  ++ + +   +A       V   + + K+  ++Q
Sbjct: 1097 DRQTCMWSATWPKEVRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMIQ 1156

Query: 237  QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             + +  D  K+ I IF   K+    +   L + G+   +IHG+  Q  R  +L+ FK G 
Sbjct: 1157 HMERIMDDKKSKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 1216

Query: 296  IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
              +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG +G A TL   ++ K
Sbjct: 1217 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGANGTAITLFTTDNAK 1276

Query: 356  HI-DAIEKLIEKK 367
               D +  L E K
Sbjct: 1277 QARDLVNILTESK 1289


>gi|148702332|gb|EDL34279.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_a [Mus
           musculus]
          Length = 927

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 212/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 253 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 312

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 313 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 368

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 369 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 428

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 429 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 488

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L  +L+++G ++  +HG++DQ  R K++S+FK+  I
Sbjct: 489 RLVEFTSS-GSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 547

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 548 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 604


>gi|319898057|ref|YP_004136254.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
 gi|317433563|emb|CBY81947.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
          Length = 439

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 137/383 (35%), Positives = 214/383 (55%), Gaps = 6/383 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP L  
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++        
Sbjct: 66  LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QTL
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  EL    +E  L +P +++        + I   +    +    K  LL + ++
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   + GI+F  ++++V  L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 245 TEKVTR-GIVFVRRREDVRELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381
           ++  E+  K   L G      PP
Sbjct: 364 KRYTEEILKARILAGLEPRTKPP 386


>gi|283834551|ref|ZP_06354292.1| ATP-dependent RNA helicase RhlB [Citrobacter youngae ATCC 29220]
 gi|291069681|gb|EFE07790.1| ATP-dependent RNA helicase RhlB [Citrobacter youngae ATCC 29220]
          Length = 422

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 144/373 (38%), Positives = 215/373 (57%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKV+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVIEALENKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADSKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P T 
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPTT 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     I+F N K    ++  SL   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIVFANTKHRCEDIWGSLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|195126028|ref|XP_002007476.1| GI12369 [Drosophila mojavensis]
 gi|193919085|gb|EDW17952.1| GI12369 [Drosophila mojavensis]
          Length = 794

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 213/373 (57%), Gaps = 12/373 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F + G    V+  +   G+ KPT IQ + +P+ L   D+  +AQTG+GKT ++VLP +
Sbjct: 143 IEFEEGGFPDYVMNEIRKQGFTKPTAIQAQGMPIALSGRDLVAVAQTGSGKTLAYVLPAV 202

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA Q+     ++G N  +    + GG P   
Sbjct: 203 VHINNQPRLERGDG----PIALVLAPTRELAQQIQQVASEFGSNTQVRNTCIFGGAPKGQ 258

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 259 QARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 318

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQ L++SAT   E+++++E FL N  ++ + + S +A       V    +  K   L
Sbjct: 319 RPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDESEKIVKL 378

Query: 235 LQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +Q L Q S +     IIF   KK V  +  ++ +QG+  CAIHG+  Q+ R  +LS+F+ 
Sbjct: 379 IQLLTQISGENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRN 438

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    +
Sbjct: 439 GRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSN 498

Query: 354 I-KHIDAIEKLIE 365
             K  D I+ L E
Sbjct: 499 ANKANDLIQVLRE 511


>gi|150391484|ref|YP_001321533.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951346|gb|ABR49874.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 484

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 135/400 (33%), Positives = 229/400 (57%), Gaps = 12/400 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D  LS +++ ++    +  PT +Q + IP +L+  D+   +QTG+GKTA+F +P+  
Sbjct: 5   NFSDYQLSDELLKSISMLNFESPTKVQQQVIPAILEHKDIIVKSQTGSGKTAAFAIPICQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    +   P+ L+L PTRELA QV ++    G+   L VA + G  PF  Q K+L++
Sbjct: 65  LVDWDENK---PQALVLVPTRELAIQVKEDMFNIGRFKRLKVAAVYGKAPFYHQEKELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGRI+DH  +G    + I+ LVIDEAD M +MGF+  I+ I   +   R T+
Sbjct: 122 KTHVVVGTPGRIIDHMEKGTFDTSQIKYLVIDEADEMFNMGFVDQIETIIKDLSKKRVTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM   ++ +S  ++++P   E+   SS  + I         +Y  K  LL  +   
Sbjct: 182 LLSATMPSAIETLSNRYMKDPIHAEIEEESSAVDRISQERYT--VEYRDKMKLLSDITIV 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++   + IIFCN K+ V  +   L +  ++   IHG ++QR R+++++ FK+G  + +VA
Sbjct: 240 ENP-DSCIIFCNTKQRVDEVNDELIRLNYTCEKIHGGMEQRDRVRVMNEFKQGYFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++  V N+D+P   E+Y+HRIGRTGR  R G+A T V + + K +  I 
Sbjct: 299 TDVAARGIDIDNISLVINYDIPQDKESYVHRIGRTGRISREGRAITFVTQYEDKFLKDIH 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           + I K++  +        P +E ++ ++     K N  P+
Sbjct: 359 RYIGKEIPLMQ------RPEIETVNDSKEEFVEKINTKPE 392


>gi|237736924|ref|ZP_04567405.1| ATP-dependent RNA helicase [Fusobacterium mortiferum ATCC 9817]
 gi|229420786|gb|EEO35833.1| ATP-dependent RNA helicase [Fusobacterium mortiferum ATCC 9817]
          Length = 545

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 130/367 (35%), Positives = 218/367 (59%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F +LGLS K + A+   GY +PTPIQ  TIP +L    D+ G AQTGTGKTA+F LP+L 
Sbjct: 7   FRELGLSEKTLKALAKKGYEQPTPIQALTIPALLNGDKDIIGQAQTGTGKTAAFSLPILE 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             E  +    + + ++L PTRELA QVA+          + +  + GG   E Q ++L++
Sbjct: 67  NFEPSK----VIQAIVLAPTRELALQVAEEMNSLAHGKKIRITPVYGGQSIEFQIRQLKK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR++D   R  + + +++  ++DEAD ML+MGF+  I+ I       ++ L
Sbjct: 123 GTDIIVGTPGRVIDLMERKLIKLQDLKYFILDEADEMLNMGFVEDIEKILEATNEDKRML 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM +E+ K+++N +++ + + V     T +  +  +   + +  K  AL + +  +
Sbjct: 183 FFSATMPNEIMKIAKNHMKDYEVLAVKARELTTDLTDQIYFEVHEK-DKFEALCRIIDLT 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D    GI+FC  K +  +L   L  +G+    +HG+I Q  R   L  FK   I ++VA
Sbjct: 242 RDFY--GIVFCRTKNDANDLVGKLNDRGYDAEGLHGDISQNYREVTLKRFKAKKINVLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ D+ HV N+ +P  AE+Y+HRIGRTGRAG+ G A T +  ++ + +  I+
Sbjct: 300 TDVAARGIDVNDLSHVINYSIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQIQ 359

Query: 362 KLIEKKV 368
           ++++ ++
Sbjct: 360 RIVKTEI 366


>gi|303315651|ref|XP_003067830.1| ATP-dependent RNA helicase DBP2, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240107506|gb|EER25685.1| ATP-dependent RNA helicase DBP2, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|320034056|gb|EFW16002.1| ATP-dependent RNA helicase DBP2 [Coccidioides posadasii str.
           Silveira]
          Length = 545

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 138/373 (36%), Positives = 209/373 (56%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ KPTPIQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 130 FDEAGFPQYVISEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 189

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 190 INAQPLLGPGDG----PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQI 245

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 246 RDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 305

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT ++SAT   E+++++ +FL +  ++ + +   +A       V   + + K+  ++ 
Sbjct: 306 DRQTCMWSATWPKEVRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMIN 365

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L +  D  K+ I IF   K+   ++   L + G+   +IHG+  Q  R  +L+ FK G 
Sbjct: 366 HLERIMDDKKSKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 425

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A TL   ++ K
Sbjct: 426 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAK 485

Query: 356 HI-DAIEKLIEKK 367
              D +  L E K
Sbjct: 486 QARDLVNILTESK 498


>gi|332028992|gb|EGI69006.1| ATP-dependent RNA helicase vasa [Acromyrmex echinatior]
          Length = 795

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 142/387 (36%), Positives = 225/387 (58%), Gaps = 19/387 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F   GL   ++  +  +GY KPTP+Q   IP+++   D+   AQTG+GKTA+FV+P+L T
Sbjct: 288 FDQSGLRTILLENIKKSGYTKPTPVQKYAIPIIMNGQDLMACAQTGSGKTAAFVVPILHT 347

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +LE  +  ++      P  +I+ PTREL +Q+    +K+     +   L  GG     Q+
Sbjct: 348 LLEDPKDLIKTSTSCEPHVIIISPTRELTSQIHQQVKKFSLGSIIRAELAYGGTSVMHQS 407

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI---TSL 173
            ++  G  +L+ TPGR+LD   RGK+ ++++  LV+DEADRMLDMGF+P I+ +    ++
Sbjct: 408 NRVLNGCHILVATPGRLLDFIGRGKIRLSSLRFLVLDEADRMLDMGFLPDIEKLIDHETM 467

Query: 174 VPFT-RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            P   RQTL+FSAT  +E+Q+++  FL+N   + V         +E  F     Q S+K 
Sbjct: 468 APAEERQTLMFSATFPNEIQELASRFLRNYLFLAVGIVGGACADVEQNFYQASGQ-SEKR 526

Query: 233 ALLQQLLQSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            LL++L++ Q  + N    ++F  QK++   +   L +  F   +IHG+  QR R + L 
Sbjct: 527 KLLKELIEKQHQLGNIEGTLVFVEQKRHTDFIAAFLSESNFPTTSIHGDRLQREREEALY 586

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK G + ++VA+ +AARGLDI +V HV NFD+P   + Y+HRIGRTGR G  GKA +  
Sbjct: 587 DFKRGKMLILVATAVAARGLDIKNVSHVINFDLPKTIDEYVHRIGRTGRVGNRGKATSFF 646

Query: 350 -AKEDIKHIDAIEKLIEKKV----DWL 371
            +  D+   D + K++++      DWL
Sbjct: 647 DSSTDMPLTDDLVKILKQASQPVPDWL 673


>gi|91088115|ref|XP_969791.1| PREDICTED: similar to GA21647-PA [Tribolium castaneum]
 gi|270012107|gb|EFA08555.1| hypothetical protein TcasGA2_TC006210 [Tribolium castaneum]
          Length = 451

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 137/367 (37%), Positives = 217/367 (59%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++DLGL   +  A     + +P+ IQ + IP+ LQ  DV G+A+TG+GKTA+F LP+L  
Sbjct: 21  WSDLGLVDVLCKACEQLKWAQPSKIQKEAIPVALQGKDVIGLAETGSGKTAAFALPILQS 80

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +   R      LIL PTRELA Q+++  E  G N  +  A+++GG+   +Q   L + 
Sbjct: 81  LLENPQRYF---ALILTPTRELAFQISEQIEALGANIGVKCAVIVGGMDMMSQALILAKK 137

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +LI TPGR+LDH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R T 
Sbjct: 138 PHILIATPGRLLDHLENTKGFNLKALKYLVMDEADRILNMDFEVEVDKILKVIPRERHTF 197

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT +++K+    L++P ++EV+T   T E ++  ++    ++ K   L+  L  +
Sbjct: 198 LFSATMTKKVKKLQRACLRDPVKVEVSTKYQTVEKLQQYYIFIPVKF-KDVYLVHIL--N 254

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + +IFC+   N +     L   G +   +HG + Q  R+  L+ FK     ++++
Sbjct: 255 EMAGNSFMIFCSTCNNTIRTALLLRNLGLTAVPLHGQMSQNKRLAALTKFKAKNRSILIS 314

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    IE
Sbjct: 315 TDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIE 374

Query: 362 KLIEKKV 368
           +LI K++
Sbjct: 375 QLIGKQL 381


>gi|307258113|ref|ZP_07539865.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306863476|gb|EFM95407.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 445

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 214/368 (58%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P+++ A+   GY +PT +Q +TIP  L   D+ G A TGTGKTA+F+LP +
Sbjct: 8   MTFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAI 67

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QVA+  + + +   L++A + GG+ ++   +  
Sbjct: 68  QHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEVF 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR++ +          +EIL+ DEADRML MGF    + I +   + + 
Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187

Query: 180 TLLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           T LFSAT+  EL    ++  L NP +I+        + I+  +         K  LL +L
Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHA-DNVEHKTKLLARL 246

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + + + M+  I+F  ++++V  L  +L K+G     + G++ Q  R + ++  K+G + +
Sbjct: 247 ISTME-MEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDGVVNV 305

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI DV +V NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D K + 
Sbjct: 306 LVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLG 365

Query: 359 AIEKLIEK 366
            I++  E+
Sbjct: 366 KIKRYTEE 373


>gi|86148269|ref|ZP_01066565.1| ATP-dependent RNA helicase [Vibrio sp. MED222]
 gi|218710959|ref|YP_002418580.1| ATP-dependent RNA helicase RhlB [Vibrio splendidus LGP32]
 gi|254797693|sp|B7VME9|RHLB_VIBSL RecName: Full=ATP-dependent RNA helicase rhlB
 gi|85833965|gb|EAQ52127.1| ATP-dependent RNA helicase [Vibrio sp. MED222]
 gi|218323978|emb|CAV20340.1| ATP-dependent RNA helicase RhlB [Vibrio splendidus LGP32]
          Length = 436

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 145/383 (37%), Positives = 220/383 (57%), Gaps = 11/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P+V+  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADLDLLPQVIEGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L K     GR +   PR +I+ PTRELA Q+ ++ +    +  +  AL  GG  ++ Q  
Sbjct: 71  LLKTPEHEGR-KPNQPRAIIMAPTRELAIQIYNDADSLVASTGIKAALAYGGESYDKQLG 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           K+E GAD+LI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KIEEGADILIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R  +LFSAT++  +Q+++   + NP+ + V     T   I+      Y     K ALL
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMHNPEHVVVEPERKTGHRIQEELF--YPSNEHKMALL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R KIL  F +G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + L+VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   ++   
Sbjct: 307 VDLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGESGHSISFACEDYAI 366

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
           ++  IE+ IE  +   + D S+L
Sbjct: 367 NLPPIEEYIEHAIPMSDYDASAL 389


>gi|316973226|gb|EFV56846.1| ATP-dependent rRNA helicase Rrp3 [Trichinella spiralis]
          Length = 496

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 138/380 (36%), Positives = 222/380 (58%), Gaps = 7/380 (1%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           G+ P +  A     +  PT +QI+ IPL LQ  DV G+A+TG+GKTA+F LP+L  L + 
Sbjct: 68  GVVPVLCEACKQLNWTDPTKVQIEAIPLALQGRDVIGLAETGSGKTAAFALPILQALLEH 127

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
             R+     L+L PTRELA Q+A+ FE  G    + VA+++GG+    Q   L +   V+
Sbjct: 128 PQRLF---ALVLTPTRELAYQIAEQFEALGACIGIKVAVIVGGVDMVTQALCLAKKPHVI 184

Query: 127 ICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           + TPGR++DH    K   + +++ LV+DEADR+LDM F   +  I  ++P  R+T LFSA
Sbjct: 185 VATPGRLVDHLENTKGFSLRSLKYLVMDEADRILDMDFESEVNKILQVIPRERKTYLFSA 244

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           TMT ++ K+    LQ+P ++EV++   T + ++  ++    ++ K C L+  L  ++   
Sbjct: 245 TMTKKVTKLQRASLQDPVKVEVSSKYQTVDKLQQHYIFIPQKF-KDCYLVYIL--NEMAG 301

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
           K+ I+F +   N +     L   GF+   +HG + Q  R+  L+ FK     +++A+D+A
Sbjct: 302 KSCIVFTSTCANSLRTALLLRNLGFTAVPLHGQMSQAKRLGALNKFKAKDRSILIATDVA 361

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLDIP V  V NFD+P  +++YIHR+GRT RAGR G + T V + D++    IE L+ 
Sbjct: 362 SRGLDIPHVDLVINFDIPTHSKDYIHRVGRTARAGRAGISITFVTQYDVELYQRIEYLLG 421

Query: 366 KKVDWLNGDLSSLNPPLEKI 385
           K++     +   +   LE++
Sbjct: 422 KQLPLFKTEEPEVLSLLERV 441


>gi|251793531|ref|YP_003008260.1| ATP-dependent RNA helicase SrmB [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534927|gb|ACS98173.1| ATP-dependent RNA helicase SrmB [Aggregatibacter aphrophilus
           NJ8700]
          Length = 441

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 212/366 (57%), Gaps = 4/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FAD  L+P+++ A+   GY +PT IQ +T+P  +   DV G A TGTGKTA+F+LP +  
Sbjct: 7   FADFDLAPELLKAIQKKGYQRPTAIQQETLPAAMDGEDVLGSAPTGTGKTAAFLLPAIQH 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVA+  E+      L++A + GG+ ++   +   +
Sbjct: 67  LLDYPRRKPGAPRVLILTPTRELAMQVAEQAEELACFTKLSIATITGGVAYQNHGEIFNK 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +          +EIL+ DEADRML MGF    + I++   + +QTL
Sbjct: 127 NQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKISAETRWRKQTL 186

Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  D L+  +E  L  P +I+        + I+  +    +    K  LL + ++
Sbjct: 187 LFSATLEGDLLEDFAERTLNEPVKIDAEPSRRERKKIQQWYYHADSN-EHKFKLLARFIE 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+ +  GI+F  ++++V  L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 246 -QEQVSKGIVFVRRREDVRELAENLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGVVTVLV 304

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D++ARG+DI DV H+ NFD+P  A+ Y+HRIGRT RAG+ G A + V   D + +  I
Sbjct: 305 STDVSARGIDIDDVSHIMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYRLLGKI 364

Query: 361 EKLIEK 366
           ++  ++
Sbjct: 365 KRYTQE 370


>gi|15227951|ref|NP_181780.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|108861890|sp|Q84W89|RH37_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 37
 gi|4559339|gb|AAD23001.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
 gi|330255039|gb|AEC10133.1| DEAD-box ATP-dependent RNA helicase 37 [Arabidopsis thaliana]
          Length = 633

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 145/362 (40%), Positives = 207/362 (57%), Gaps = 23/362 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++ L   +   +    YVKPTP+Q   IP++L+  D+   AQTG+GKTA+F  P+++ 
Sbjct: 161 FAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISG 220

Query: 63  LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           + K +       +R   P  +IL PTRELA+Q+ D  +K+     + V +  GG P   Q
Sbjct: 221 IMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQ 280

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++LERG D+L+ TPGR+ D   R ++ M  I  L +DEADRMLDMGF P I+ I   + 
Sbjct: 281 LRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMD 340

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTLLFSAT   E+Q+++ +FL N   + V    S+ + I       +   S K
Sbjct: 341 MPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQ--RVEFVLDSDK 398

Query: 232 CALLQQLLQSQDTMKNGI--------IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + L  LL +Q   +NGI        +F   K+   +L + L   GF   +IHG+  Q+ 
Sbjct: 399 RSHLMDLLHAQ--RENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQE 456

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L  FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G
Sbjct: 457 REVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 516

Query: 344 KA 345
            A
Sbjct: 517 LA 518


>gi|149910890|ref|ZP_01899522.1| putative ATP-dependent RNA helicase [Moritella sp. PE36]
 gi|149806044|gb|EDM66027.1| putative ATP-dependent RNA helicase [Moritella sp. PE36]
          Length = 424

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 214/370 (57%), Gaps = 15/370 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGL   ++  + +  Y++PTPIQ + IP VL   D+   A TG+GKTA+F LP+L 
Sbjct: 9   NFTELGLISPLLTRLTEMEYLQPTPIQAQAIPSVLAGRDLIAGANTGSGKTAAFALPLLQ 68

Query: 62  ILEKGR------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFE 113
            L   +      ++      LIL PTRELA QVAD+ + Y  + N  +  L   GG+   
Sbjct: 69  QLHTEKQLSDTSSKGNYVTGLILVPTRELAIQVADSIKSYAAHLNGAIKTLAVFGGVSAN 128

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  G D+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  + +L
Sbjct: 129 TQMLALRGGTDILVATPGRLLDLISSNAIKLDRVKTLVLDEADRMLSLGFTEELSALLAL 188

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKC 232
            P  +Q LLFSAT  +++Q +++  L +P  +E+   S+ A T ++  F  T  +   K 
Sbjct: 189 TPKQKQILLFSATFPEQVQALTQELLNDP--VEIQLQSADASTLVQRVFTVTKGE---KT 243

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           ALL  L++  +  +  +IF N K +  +L   L K+G +    HG+  Q +R++ L  FK
Sbjct: 244 ALLAHLIKRHE-WRQVLIFVNSKHSCNHLADKLAKRGITSQVFHGDKGQSARIRTLDGFK 302

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G + +++A+D+AARG+DI  +  V NFD+P    +Y+HRIGR+GRAG  G A +L+  E
Sbjct: 303 AGQVHVLIATDIAARGIDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHE 362

Query: 353 DIKHIDAIEK 362
           D  H   IEK
Sbjct: 363 DYHHFSTIEK 372


>gi|143361556|sp|Q5QMN3|RH20_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 20
          Length = 494

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 138/392 (35%), Positives = 221/392 (56%), Gaps = 20/392 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+G    V+  +  AG+V+PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP + 
Sbjct: 92  EFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIV 151

Query: 62  ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                 IL  G      P  L+L PTRELA Q+     K+G +  +    + GG+P   Q
Sbjct: 152 HVNAQPILAPGDG----PIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQ 207

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L++G +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S + 
Sbjct: 208 VRDLQKGVEIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIR 267

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQ-YSKKC 232
             RQTL +SAT   E+++++ NFL +P ++ + +    A     +H  + + +Q Y+K  
Sbjct: 268 PDRQTLYWSATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILSESQKYNKLV 327

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL+ ++     +    IF + KK    +   L   G+   +IHG+  Q  R  +LS FK
Sbjct: 328 NLLEDIMDGSRIL----IFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFK 383

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +M A+D+AARGLD+ DV +V N+D P   E+Y+HRIGRTGRAG  G A+T     
Sbjct: 384 SGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 443

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLN---PP 381
           + +    +  ++E+    ++ +L+++    PP
Sbjct: 444 NARFAKDLINILEEAGQKVSPELANMGRGAPP 475


>gi|238894460|ref|YP_002919194.1| ATP-dependent RNA helicase DbpA [Klebsiella pneumoniae NTUH-K2044]
 gi|238546776|dbj|BAH63127.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 457

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 142/382 (37%), Positives = 219/382 (57%), Gaps = 9/382 (2%)

Query: 3   FADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L + P    A L + GY+  TP+Q   +P +L R DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLTVLPAAQLANLNELGYLSMTPVQAAALPAILGRKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++  R   +   +L+L  TRELA QVA    +  +   N+ + +L GG PF AQ   L+
Sbjct: 64  HIDPARFETQ---SLVLCTTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ ++ LV+DEADRMLDMGF   I  +    P  RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +  +S    +NP+ IE++T  +    IE  F         K ALLQ+LL 
Sbjct: 181 LLFSATWPAAIAAISGRVQRNPQTIEIDTVDAL-PAIEQQFFEV--SRHGKIALLQRLL- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN K++   +C +L   G S  ++HG+++QR R + L  F  G+++++V
Sbjct: 237 SQHQPASCVVFCNTKRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +    +
Sbjct: 297 ATDVAARGLDIKSLALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQRATIL 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPL 382
             +++  ++WL     +   PL
Sbjct: 357 ADMLQLSLNWLPAPTGNTIAPL 378


>gi|321260432|ref|XP_003194936.1| ATP-dependent RNA helicase DBP2 (p68-like protein) [Cryptococcus
           gattii WM276]
 gi|317461408|gb|ADV23149.1| ATP-dependent RNA helicase DBP2 (p68-like protein), putative
           [Cryptococcus gattii WM276]
          Length = 537

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 141/376 (37%), Positives = 209/376 (55%), Gaps = 15/376 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    ++  +   G+  P+ IQ +  P+ L   DV  IA+TG+GKT SF LP +  
Sbjct: 111 FEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDVVAIAETGSGKTISFCLPAMVH 170

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  LIL PTRELA Q+     K+G++  +    + GG P   Q 
Sbjct: 171 INAQPLLAPGDG----PIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQI 226

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+RG ++ + TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 227 RDLQRGVEICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRP 286

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE--TIEHCFVATYAQYSKKCAL 234
            RQTLLFSAT   E+Q+++ +FL +  ++ + +   TA     +H  V T   + K+  L
Sbjct: 287 DRQTLLFSATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCT--DFDKRSKL 344

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L +        +IF   K+   +L   L   G+   AIHG+  Q  R  +L+ FK G
Sbjct: 345 LSHLEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSG 404

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +M+A+D+A+RGLD+ D+G+V N+D PN  E+YIHRIGRTGRAGR G ++T    ++ 
Sbjct: 405 RSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNS 464

Query: 355 KHI-DAIEKLIEKKVD 369
           K   + ++ L E K D
Sbjct: 465 KSARELVQILRESKAD 480


>gi|284006573|emb|CBA71834.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
          Length = 423

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 218/373 (58%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F D  L PKV+ A+   G+   TPIQ  T+P  ++  DV G AQTGTGKT +F+      
Sbjct: 6   FIDFALHPKVIEALNKNGFHNCTPIQASTLPFTVEGRDVAGQAQTGTGKTLAFLTSTFHY 65

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT       +V  PR LI+ PTRELA Q+  + ++      L + L  GG  ++ Q   
Sbjct: 66  LLTHPTNSERQVNQPRALIMAPTRELAVQIYTDAKELAAITGLKMGLAYGGDGYDEQLHV 125

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176
           L+ G D+LI T GR++D+  +G + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 126 LQSGVDILIGTTGRLIDYAKQGHIHLGRIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAA 185

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
            R  LLFSAT++  +Q+++   +  P+ IEV     T   I E  F   Y    +K  LL
Sbjct: 186 QRLNLLFSATLSYRVQELAFEQMNQPEYIEVEPQQKTGHRIKEELF---YPSNEEKMRLL 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++  +  IIF N K    ++   L   G  V  + G++ Q+ R++IL  F +G 
Sbjct: 243 QTLIE-EEWPERCIIFANTKHRCEDIWAHLAADGHRVGLLTGDVAQKKRLRILEQFTQGH 301

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 302 LDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYSL 361

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE+ I+ ++
Sbjct: 362 NLPAIEEYIQHQI 374


>gi|168052555|ref|XP_001778715.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669930|gb|EDQ56508.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 579

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 209/368 (56%), Gaps = 19/368 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++ L P +   +    Y KPTP+Q   IP+ L   D+   AQTG+GKTA+F  P++  
Sbjct: 132 FAEIDLGPALNENIRRCKYTKPTPVQKYAIPISLHGRDLMACAQTGSGKTAAFCFPIIAG 191

Query: 63  LEK----GR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           + +    GR    R  +P  LIL PTREL+ Q++D  +K+     + V +  GG P   Q
Sbjct: 192 IMRNTPPGRPRGGRKALPLALILSPTRELSCQISDEAKKFAYQTGIRVVVAYGGAPVHNQ 251

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            +++ERG D+L+ TPGR+ D   R ++ ++ +  L +DEADRMLDMGF P I+ I   + 
Sbjct: 252 LREMERGVDILVATPGRLSDLLERARVSLSMVRYLALDEADRMLDMGFEPQIRRIVEQMD 311

Query: 176 FT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQT+LFSAT   E+Q+++ +FL N   + V    S+ + I       + Q + K
Sbjct: 312 MPPAGERQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQ--RVEFVQDADK 369

Query: 232 CALLQQLLQSQDTMKN------GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            ++L  L+ +Q  +         ++F   KK   +L   L + GF    IHG+  Q+ R 
Sbjct: 370 RSMLMDLIHAQSALAPPGQQTLTLVFVETKKGADSLEDWLCRMGFPATTIHGDRSQQERE 429

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L +F+ G   ++VA+D+AARGLDIP V HV NFD+P+  ++Y+HRIGRTGRAG+ G A
Sbjct: 430 HALRSFRTGVTPILVATDVAARGLDIPHVAHVVNFDLPSDIDDYVHRIGRTGRAGKSGVA 489

Query: 346 FTLVAKED 353
                ++D
Sbjct: 490 TAFFNEKD 497


>gi|91205891|ref|YP_538246.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii RML369-C]
 gi|157826748|ref|YP_001495812.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii OSU 85-389]
 gi|91069435|gb|ABE05157.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii RML369-C]
 gi|157802052|gb|ABV78775.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii OSU 85-389]
          Length = 411

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 138/358 (38%), Positives = 210/358 (58%), Gaps = 10/358 (2%)

Query: 10  PKVVCAVLDAGYV-KPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
           P+ +   L+A  + +PT IQ ++IP+ +   D+   +QTG+GKT +++LP++    K + 
Sbjct: 7   PEELTTTLEAMKITEPTEIQKQSIPVAIAGSDILASSQTGSGKTLAYLLPVINAFIKDKT 66

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
                 TLIL PTRELA Q+     K   ++ +  A+LIGG P   Q  +L++   V+I 
Sbjct: 67  T-----TLILVPTRELATQICSTLNKVTTSFKINNAVLIGGEPMPKQFTQLKKNPKVIIG 121

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGRI+DH NRG L ++ I I V+DE DRMLDMG    ++ I   +P  RQ L+FSATM 
Sbjct: 122 TPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFSATMP 181

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
             +  +S+ +L NP RI V   +  A  I+   V       K   L +QL   + ++   
Sbjct: 182 KHIISLSQKYLNNPVRITVGATNKAAAEIKQESVH-ITDKEKFTELNKQLGDREGSV--- 237

Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           IIF   K++   L   L  +     AIHG++ QR R +++ +F++   ++MVA+D+AARG
Sbjct: 238 IIFVKTKRSADQLAKMLRYENHKAEAIHGDLSQRQRDRVILSFRKSNHRIMVATDVAARG 297

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           LDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +D+    AI++LI +
Sbjct: 298 LDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGAKGNALSFISPDDVIRWRAIDRLINQ 355


>gi|255716462|ref|XP_002554512.1| KLTH0F07106p [Lachancea thermotolerans]
 gi|238935895|emb|CAR24075.1| KLTH0F07106p [Lachancea thermotolerans]
          Length = 525

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 147/384 (38%), Positives = 219/384 (57%), Gaps = 28/384 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L P+++ A  +  Y KPTPIQ + IP  L+  D+ G+AQTG+GKTA+F +P+L  
Sbjct: 107 FSELNLVPELIEACENLKYSKPTPIQAEAIPPALEGKDIIGLAQTGSGKTAAFAIPILNQ 166

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +         +L PTRELA Q+ + F+  G    +    ++GG+    Q + L R 
Sbjct: 167 LWHDQQPYY---ACVLAPTRELAQQIKETFDSLGGAMGVRTTCIVGGMNMIDQARDLMRK 223

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180
             ++I TPGR++DH    K   M  ++ LV+DEADR+LDM F P +  I  ++P   R T
Sbjct: 224 PHIIIATPGRLMDHLENTKGFSMRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQGRTT 283

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-------TYAQYSKKCA 233
            LFSATMT ++ K+    L NP +  V+T   T +T+    +        T+  Y     
Sbjct: 284 YLFSATMTSKIDKLQRASLTNPVKCAVSTKYQTVDTLIQTLMVVPGGLKNTFLIY----- 338

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           LL + L      K  I+F   K N   +  LC+ LE   FS  A+HG+++Q  R   L  
Sbjct: 339 LLNEFLG-----KTAIVFTRTKANAERIATLCNLLE---FSATALHGDLNQNQRTGALDL 390

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV+
Sbjct: 391 FKAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 450

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGD 374
           + D++ I  IE ++ +K+   N D
Sbjct: 451 QYDLELILRIEDVLGRKLPKENVD 474


>gi|143454263|sp|Q5N7W4|RH30_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 30
          Length = 666

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 207/373 (55%), Gaps = 17/373 (4%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRA 68
           A+  +G+V+PTPIQ +  P+ L+  D+ GIAQTG+GKT S++LP L        LE+G  
Sbjct: 265 AIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQGDG 324

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
               P  LIL PTRELA Q+     K+G         + GG P   Q + L RG +++I 
Sbjct: 325 ----PIVLILAPTRELAVQIQQESGKFGSYSRTRSTCIYGGAPKGPQIRDLRRGVEIVIA 380

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR++D    G   +  +  LV+DEADRMLDMGF P I+ I + +   RQTL +SAT  
Sbjct: 381 TPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWP 440

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCF--VATYAQYSKKCALLQQLLQSQDTM 245
            E++ ++  FLQNP ++ + +P   A  +I+     ++ + +Y +   LL  L+     +
Sbjct: 441 REVESLARQFLQNPYKVIIGSPDLKANHSIQQIIEVISEHEKYPRLSKLLSDLMDGSRIL 500

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
               IF   KK+   +   L   G+   +IHG+  Q  R  +L+ FK G   +M A+D+A
Sbjct: 501 ----IFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDVA 556

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARGLD+ D+  V NFD P   E+YIHRIGRTGRAG  G AFT     + K    + K++ 
Sbjct: 557 ARGLDVKDIKCVINFDFPTTLEDYIHRIGRTGRAGASGTAFTFFTLSNAKFSRNLVKILR 616

Query: 366 KKVDWLNGDLSSL 378
           +    +N  L S+
Sbjct: 617 EAGQVVNPALESM 629


>gi|332028827|gb|EGI68856.1| ATP-dependent RNA helicase bel [Acromyrmex echinatior]
          Length = 704

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 155/395 (39%), Positives = 223/395 (56%), Gaps = 27/395 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F ++ L+  +  ++  AGY KPTP+Q   IP++++R DV   AQTG+GKTA+F++P+L  
Sbjct: 215 FDEVKLTEIIKNSIALAGYDKPTPVQKYAIPIIIERRDVMACAQTGSGKTAAFLVPILNQ 274

Query: 62  ILEKG-----------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           I E G             R + P  L+L PTRELA Q+ D   K+     +  A++ GG 
Sbjct: 275 IYESGPRPPPPQANSSGRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGGS 334

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L+RG  +L+ TPGR++D   RGK+ ++N   LV+DEADRMLDMGF P I+ I
Sbjct: 335 NIVDQMRELDRGCHLLVATPGRLVDMLGRGKIGLHNCRFLVLDEADRMLDMGFEPQIRRI 394

Query: 171 TSL--VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                +P T  RQTL+FSAT   E+Q ++ +FL N   + V    ST+E I    V  + 
Sbjct: 395 VQEDNMPPTGERQTLMFSATFPKEIQMLARDFLSNYIFLAVGRVGSTSENITQKIV--WV 452

Query: 227 QYSKKCALLQQLLQ----SQDTMKN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
           +   K + L  LLQ    S  T ++  ++F   KK    L   L   G+ V +IHG+  Q
Sbjct: 453 EEHDKRSYLLDLLQASNFSDPTAESLTLVFVETKKGADMLEEYLASMGYPVTSIHGDRTQ 512

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P   E Y+HRIGRTGR G 
Sbjct: 513 REREEALRRFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGN 572

Query: 342 HGKAFTLVAKEDIKHI-DAIEKLIEKKVD---WLN 372
            G A +    ++   + D +  LIE   +   WL+
Sbjct: 573 LGLATSFFNHKNHNLVRDLVSLLIEANQELPPWLD 607


>gi|261332683|emb|CBH15678.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 512

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 145/419 (34%), Positives = 246/419 (58%), Gaps = 12/419 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  +++ A  +AG+  PT IQ+ TIP+V +  D+ G+AQTG+GKT ++VLP++  
Sbjct: 42  FKSLGLCEELIGACKEAGWRMPTRIQVATIPVVSEGRDIIGVAQTGSGKTGAYVLPLVNW 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +A+V     L++ PTRELA QVA  F   G +  L VA L+GG     Q  +L R 
Sbjct: 102 LLT-QAKVPYLSILVMVPTRELAQQVAAQFVMLGSSVGLRVATLVGGADMVDQACELSRR 160

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             V++ TPGR+ DH N  K   +  +  LV+DEAD+ML+M +   I  I   +P  RQTL
Sbjct: 161 PHVVVGTPGRVKDHLNNTKGFQLVKLHALVLDEADKMLEMDYEKEINAILEHLPHNRQTL 220

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT++ ++ ++    L +P  +EV+  ++T +T++  +V  +A +++    L   L +
Sbjct: 221 LFSATLSTKIDRLQNASLNDPVLLEVHRKNTTVDTLKQYYV--FAPFAQMLPYLHLYL-T 277

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +++  + ++FC     V  +  +L   G     + G +DQ++R   L+ FKEG ++++V 
Sbjct: 278 RESGNHILVFCRSAALVHRITLTLRVLGHQALPLMGRMDQKNRNIALTKFKEGRVRILVC 337

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A RGLDIP    V NF +P+R E+YIHR+GRT RAG  GKA  ++++ DI  +  +E
Sbjct: 338 TDVAQRGLDIPRTDVVVNFALPDRVEDYIHRVGRTARAGAQGKAVNIISQYDIVLLQKVE 397

Query: 362 KLIEKKV-DW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
                K  +W   +GD++++   L++++ A+    ++     Q++  F+R  +  ++ +
Sbjct: 398 ASTGVKCEEWPISDGDVAAV---LQRVEDAEQEAVKEMRESDQEAK-FEREARQLTTAR 452


>gi|71082870|ref|YP_265589.1| ATP-dependent RNA helicase [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71061983|gb|AAZ20986.1| probable ATP-dependent RNA helicase [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 582

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 135/348 (38%), Positives = 207/348 (59%), Gaps = 13/348 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--ILEKGRARVRMPRTLIL 78
           + KPTPIQ   IP+ L+  D+ G AQTGTGKT +F +P++   IL+K          L++
Sbjct: 22  FTKPTPIQAMAIPVALEGKDILGTAQTGTGKTLAFSIPLINKLILDKNAF------ALVM 75

Query: 79  EPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
            PTRELA QV    +       N+  ALLIGG   + Q ++L   + +++ TPGRI DH 
Sbjct: 76  CPTRELATQVMAAIKSIISDKINIKTALLIGGEAMQKQLRQLGNRSRIIVGTPGRINDHL 135

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
            R  L ++  + LV+DE DRMLDMGF P I+ I   VP   QTLLFSAT+   + ++SE 
Sbjct: 136 KRKSLNLSATKYLVLDETDRMLDMGFTPQIELILKFVPKDHQTLLFSATLPQNIVRISER 195

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
           +L  P+RI   + S     I+   +  + + +K   L+ Q +  + ++   ++F   K+ 
Sbjct: 196 YLNEPQRISTGSTSVPIAKIKQETLQVFKE-NKYDQLVDQFIARKGSI---LVFVKTKRG 251

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
              +   L+++G S  AIHG++ Q  R +++++F++G  ++++A+D+AARGLDIP + HV
Sbjct: 252 ADKMVKRLKEEGHSADAIHGDLRQSKRDRVITSFRKGLKRILIATDVAARGLDIPLIQHV 311

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
            NFD+P   E+Y+HRIGRT RAG  G A T +  +D    + I KLI+
Sbjct: 312 INFDLPQVPEDYVHRIGRTARAGTEGSALTFLTPDDRSMWNEISKLID 359


>gi|77359468|ref|YP_339043.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874379|emb|CAI85600.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
          Length = 408

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 205/370 (55%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++  L  K++ A+   GY  PT IQ + IP  LQ  D+   A TGTGKTA+F++P +
Sbjct: 1   MQFSEFDLDNKLLDAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAI 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R      R L++ PTRELA Q+ +  E   K  NL + ++ GGI +    +  
Sbjct: 61  QYLLDFPRRDPGFARVLVMTPTRELAYQIHEQCELLAKRTNLKIGVVTGGINYGTHKEIF 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+  D+LI TPGR++++         ++E+L+IDEADRMLDMGF   +  I       RQ
Sbjct: 121 EKNNDILIATPGRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEAKNRRQ 180

Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             LFSAT+  D +++ +E  L +P  +E  +       I H +V     Y  K  LL   
Sbjct: 181 CFLFSATLEGDSVERFAETTLNDPALLEAESSRKEKAKI-HQWVHLADDYHHKLELLVNT 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   D  K  I+F   ++ +  L   L         + G + Q  RMK + NF  G  ++
Sbjct: 240 LNGPDVTK-AIVFVKTRERLETLIGELTTNDVKAAWLRGEMPQDKRMKAMENFHSGKTRI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+ HV NFD+P  A+ Y+HRIGRTGRAG+ G A +LV   DI  + 
Sbjct: 299 LVATDVAARGIDVADISHVINFDLPRTADIYVHRIGRTGRAGKKGIAISLVEAHDIGILY 358

Query: 359 AIEKLIEKKV 368
            IE+ IE+K+
Sbjct: 359 KIERYIEQKL 368


>gi|229826321|ref|ZP_04452390.1| hypothetical protein GCWU000182_01693 [Abiotrophia defectiva ATCC
           49176]
 gi|229789191|gb|EEP25305.1| hypothetical protein GCWU000182_01693 [Abiotrophia defectiva ATCC
           49176]
          Length = 522

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 130/362 (35%), Positives = 217/362 (59%), Gaps = 7/362 (1%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L  +++ AV + GY + TPIQ + IP+ +   D+ G AQTGTGKTA+F +P+L  ++ G 
Sbjct: 3   LDERILKAVKELGYEEATPIQTEAIPVAITGRDILGQAQTGTGKTAAFSIPILNNIDSGN 62

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLERGADVL 126
             ++    ++L PTRELA QV     K  +  + + +  + GG     Q K L++GA ++
Sbjct: 63  KHLQ---AVVLCPTRELALQVCGEIRKLSRYMHGIKLVPVYGGQDIVKQIKSLKQGAQII 119

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR++DH  R  +  + ++I+V+DEAD MLDMGF   I+ I + VP  RQT+LFSAT
Sbjct: 120 VGTPGRVMDHMRRKTVKFDQVKIMVLDEADEMLDMGFRDDIETILAEVPEERQTMLFSAT 179

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
           M   +  ++  + +  + I++     T E IE  +      Y  K  +L ++L   +  +
Sbjct: 180 MPKPILDITRKYQKKAQNIKIAKKELTVENIEQYYYEVRRNY--KDEILSRILDMYNP-E 236

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+FCN KK V  + + L+ +G+    +HG++ Q+ R +++ NF+ G  +++VA+D+AA
Sbjct: 237 LSIVFCNTKKKVEEVANELQGRGYFAEGLHGDLKQQQRDRVMGNFRNGKTEILVATDVAA 296

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RG+D+  V  V N+D+P   E Y+HRIGRTGRAG+ G A + V+ +++  +  I++    
Sbjct: 297 RGIDVKGVDLVINYDLPQDDEYYVHRIGRTGRAGKAGLALSFVSGKEVYKLKEIQRYCHT 356

Query: 367 KV 368
           K+
Sbjct: 357 KI 358


>gi|148702333|gb|EDL34280.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_b [Mus
           musculus]
          Length = 1012

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 212/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 338 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 397

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 398 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 453

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 454 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 513

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 514 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 573

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L  +L+++G ++  +HG++DQ  R K++S+FK+  I
Sbjct: 574 RLVEFTSS-GSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 632

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 633 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 689


>gi|91762707|ref|ZP_01264672.1| probable ATP-dependent RNA helicase [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718509|gb|EAS85159.1| probable ATP-dependent RNA helicase [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 582

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 135/348 (38%), Positives = 207/348 (59%), Gaps = 13/348 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--ILEKGRARVRMPRTLIL 78
           + KPTPIQ   IP+ L+  D+ G AQTGTGKT +F +P++   IL+K          L++
Sbjct: 22  FTKPTPIQAMAIPVALEGKDILGTAQTGTGKTLAFSIPLINKLILDKNAF------ALVM 75

Query: 79  EPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
            PTRELA QV    +       N+  ALLIGG   + Q ++L   + +++ TPGRI DH 
Sbjct: 76  CPTRELATQVMAAIKSIISDKINIKTALLIGGEAMQKQLRQLGNRSRIIVGTPGRINDHL 135

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
            R  L ++  + LV+DE DRMLDMGF P I+ I   VP   QTLLFSAT+   + ++SE 
Sbjct: 136 KRKSLNLSATKYLVLDETDRMLDMGFTPQIELILKFVPKDHQTLLFSATLPQNIVRISER 195

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
           +L  P+RI   + S     I+   +  + + +K   L+ Q +  + ++   ++F   K+ 
Sbjct: 196 YLNKPQRISTGSTSVPIAKIKQETLQVFKE-NKYDQLVDQFIARKGSI---LVFVKTKRG 251

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
              +   L+++G S  AIHG++ Q  R +++++F++G  ++++A+D+AARGLDIP + HV
Sbjct: 252 ADKMVKRLKEEGHSADAIHGDLRQSKRDRVITSFRKGLKRILIATDVAARGLDIPLIQHV 311

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
            NFD+P   E+Y+HRIGRT RAG  G A T +  +D    + I KLI+
Sbjct: 312 INFDLPQVPEDYVHRIGRTARAGTEGSALTFLTPDDRSMWNEISKLID 359


>gi|47121785|gb|AAT11555.1| vasa-like protein [Copidosoma floridanum]
 gi|47175561|gb|AAT12450.1| vasa protein [Copidosoma floridanum]
          Length = 708

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 145/361 (40%), Positives = 210/361 (58%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F +  L   +V  +  +GY  PTPIQ   IP+VL   D+ G AQTG+GKTA+F++P++  
Sbjct: 282 FDEANLRSLLVDNIKKSGYQIPTPIQKHGIPIVLAGRDLMGCAQTGSGKTAAFLIPIIHN 341

Query: 61  ------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                  I + G      PR LIL PTRELA Q+ D   K+ K+  L   L+ GG     
Sbjct: 342 LLLKPREINDMGSLSTVEPRALILAPTRELAIQIHDECRKFSKDSVLKCCLIYGGTAVGH 401

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI---- 170
           Q K++  G D+L+ TPGR+ D   RGK++ + IE LV+DEADRM+DMGFI  ++ +    
Sbjct: 402 QLKQIFYGCDLLVATPGRLKDFVGRGKVVFSAIEYLVLDEADRMIDMGFIGDVEMVIRHE 461

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
           T   P  RQTL+FSAT   ++Q+++  FL N   + V    S    IE  F+    + S 
Sbjct: 462 TMTPPGERQTLMFSATFPRDIQELAVKFLNNYIFVAVGIVGSACSDIEQSFLEV--KKSD 519

Query: 231 KCALLQQLLQSQ---DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
           K + L+++L+ +   DT+K  ++F +QK+    +   L    F   +IHG+  QR R + 
Sbjct: 520 KRSKLKEILEEERNNDTLKGILVFVDQKRTADFIAAFLSDNNFPTTSIHGDRLQREREEA 579

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L++FK G + ++VA+ +AARGLDI +V  V NFD+P   + YIHRIGRTGR G  GKA +
Sbjct: 580 LNDFKSGRMCILVATAVAARGLDIKNVRFVINFDLPKEIDEYIHRIGRTGRVGNKGKAVS 639

Query: 348 L 348
            
Sbjct: 640 F 640


>gi|126303302|ref|XP_001379053.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX27
           (DEAD box protein 27) [Monodelphis domestica]
          Length = 796

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 139/363 (38%), Positives = 210/363 (57%), Gaps = 1/363 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 223 LTFQDMNLSRPLLKAITTMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 282

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++  +   +T  L +GG+  ++Q   L 
Sbjct: 283 ERLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSTVTTCLAVGGLDVKSQEAALR 342

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            G D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 343 AGPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIQMCSHHRQ 402

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 403 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSAL 462

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 463 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 522

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K +  
Sbjct: 523 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 582

Query: 360 IEK 362
           I K
Sbjct: 583 IVK 585


>gi|301169122|emb|CBW28719.1| ATP-dependent RNA helicase [Haemophilus influenzae 10810]
          Length = 439

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 136/383 (35%), Positives = 214/383 (55%), Gaps = 6/383 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP L  
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++        
Sbjct: 66  LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QTL
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  EL    +E  L +P +++        + I   +    +    K  LL + ++
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++  + GI+F  ++++   L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 245 TEEVTR-GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381
           ++  E+  K   L G      PP
Sbjct: 364 KRYTEEILKARILAGLEPRTKPP 386


>gi|303237281|ref|ZP_07323851.1| ATP-dependent RNA helicase DeaD family protein [Prevotella disiens
           FB035-09AN]
 gi|302482668|gb|EFL45693.1| ATP-dependent RNA helicase DeaD family protein [Prevotella disiens
           FB035-09AN]
          Length = 565

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 153/424 (36%), Positives = 244/424 (57%), Gaps = 21/424 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  L L+  ++ A+ D  + K TPIQ   IP +L+  DV G+AQTGTGKTA+++LP+L
Sbjct: 1   MNFESLDLNDDILDALYDMRFEKCTPIQENCIPEILKGKDVLGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIG--GIPFEAQN 116
           + L  G         LI+ PTRELA Q+    + +    N    VA+  G  G  ++ + 
Sbjct: 61  SKLADGGYPEDAINCLIMSPTRELAQQIDQAIQGFSYYLNGVSCVAVYGGNDGNRYDQEL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  GA+++I TPGR + H + G + ++ +   ++DEADRMLDMGF   I  I   +P 
Sbjct: 121 KSLSLGANLVIATPGRFISHMSLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIQKNLPK 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T QT++FSATM  +++ +++  L NP  I++   S  AE I    +A     ++K  +++
Sbjct: 181 TCQTIMFSATMPKKIEDLAQTLLTNPSVIKLAV-SKPAEKIHQ--LAYVCHETQKMGIIK 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            + ++ + ++  IIF   K+ V  +  SL ++  +   +H ++ Q  R +++  FK G I
Sbjct: 238 DIFKAGN-LQRVIIFSGSKQKVKQIALSLNQKKINCGQMHSDLAQAERDEMMFKFKSGQI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ ARG+DI D+  V N+DVP+ AE+Y+HRIGRT RA R G A T V ++DI +
Sbjct: 297 DVLVATDILARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRKGSAITFVNEDDIYY 356

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPL-EKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
              IEK +EK+V+      + L   L E +D    N  R+      K++   RR+K+   
Sbjct: 357 FQQIEKFLEKEVEK-----AELPEGLGEGLDYVSRNKERR------KTSAKSRRRKD-RD 404

Query: 416 QKSH 419
           Q+SH
Sbjct: 405 QQSH 408


>gi|294665093|ref|ZP_06730397.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292605135|gb|EFF48482.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 570

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 139/373 (37%), Positives = 224/373 (60%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L P ++  +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++  
Sbjct: 11  FSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNR 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q + 
Sbjct: 71  LLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL 130

Query: 119 LERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           L++G DV+I TPGR++D+  + K++ ++  EI V+DEADRM D+GFI  I+ +   +P  
Sbjct: 131 LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER 190

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            TRQTLLFSAT++  + +++   +  P+++ V T S TA  +       +    +K  LL
Sbjct: 191 GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIY--FPSDEEKQTLL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL   +  +  ++F N K  V  +  +LE+ G+ V  + G++ Q+ R  +L+ F++G 
Sbjct: 249 LGLLSRSEGART-MVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367

Query: 356 HIDAIEKLIEKKV 368
            +  IE  IE+K+
Sbjct: 368 SLPDIEAYIEQKI 380


>gi|227358108|ref|ZP_03842449.1| ATP-independent RNA helicase [Proteus mirabilis ATCC 29906]
 gi|227161444|gb|EEI46481.1| ATP-independent RNA helicase [Proteus mirabilis ATCC 29906]
          Length = 457

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 222/370 (60%), Gaps = 9/370 (2%)

Query: 3   FADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FADL  L  + +  + + GY+  TP+Q  ++P +L   DV   A+TG+GKTA+F    L 
Sbjct: 4   FADLHALPAEQLTNLNELGYLTMTPVQEASLPAILAGKDVRAQAKTGSGKTAAF---GLG 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           +L++  A+    ++L+L PTRELA QVA+   +  +   N+ +  L GG+PF  Q   L 
Sbjct: 61  LLQRIDAKQFNTQSLVLCPTRELADQVANELRRLARFLPNIKILTLCGGVPFSIQRDSLI 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             A +++ TPGR+LDH N+  + + +++ LV+DEADRMLDMGF   I +I S +   RQT
Sbjct: 121 HAAHIIVATPGRLLDHLNKQTVTLADVKTLVLDEADRMLDMGFFDDISDIISQMSAQRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  DE+ K+S    Q+P  IE+N+P      +E  F   Y         L Q L 
Sbjct: 181 LLFSATWPDEIAKISRKIQQDPVTIEINSPDELP-AVEQQF---YEISRYGKLGLLQKLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN K++  ++  +L +   SV A+HG+++Q+ R + L  F  G+ +++V
Sbjct: 237 SHHQPNSCVVFCNTKRDCQDVYEALTESNQSVLALHGDMEQKERDQTLIRFANGSCRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++ +  E +IHRIGRT RAG  G A +  A E+I   +A+
Sbjct: 297 ATDVAARGLDIKALEMVINYELSHDPEVHIHRIGRTARAGESGLAISFCAPEEIPRANAL 356

Query: 361 EKLIEKKVDW 370
           E+++  K+DW
Sbjct: 357 EEMLNIKLDW 366


>gi|220913250|ref|YP_002488559.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
 gi|219860128|gb|ACL40470.1| DEAD/DEAH box helicase domain protein [Arthrobacter
           chlorophenolicus A6]
          Length = 561

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 140/400 (35%), Positives = 219/400 (54%), Gaps = 9/400 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  +   +V ++ DAG   P PIQ  T+P+ L  HD+ G A+TGTGKT  F +P L  
Sbjct: 39  FADYNVRQDIVDSLSDAGITHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGIPALQR 98

Query: 63  L----EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    + G  ++ +P   + L++ PTRELA QVA + +      N  +A + GG  +E Q
Sbjct: 99  VVGRDDAGYDKLAVPGAPQALVIVPTRELAVQVASDLQAASTKRNARIATIYGGRAYEPQ 158

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L+ G +V++ TPGR++D + +  L + N+ I+V+DEAD MLD+GF+P ++ I +  P
Sbjct: 159 VEALKNGVEVVVGTPGRLIDLYRQKHLSLKNVRIVVLDEADEMLDLGFLPDVETIIAGTP 218

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234
             RQTLLFSATM   +  ++  ++  P  I    P     T        Y  +S  K  +
Sbjct: 219 AVRQTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDEGLTKRDIRQLIYRAHSMDKTEV 278

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + ++LQ++   +  IIF   K+    +   L  +GF+  AIHG++ Q +R + L  F+  
Sbjct: 279 VARILQARGRGRT-IIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRNN 337

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+      + Y+HR+GRTGRAG  G A T V  +D+
Sbjct: 338 KVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWDDV 397

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
                I K +   V       SS     E++DI +    R
Sbjct: 398 PRWALINKALGLNVPEPVETYSSSPHLYEELDIPEGTKGR 437


>gi|168185061|ref|ZP_02619725.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum Bf]
 gi|226949024|ref|YP_002804115.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A2 str.
           Kyoto]
 gi|237795191|ref|YP_002862743.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum Ba4 str.
           657]
 gi|182671882|gb|EDT83843.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum Bf]
 gi|226843804|gb|ACO86470.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A2 str.
           Kyoto]
 gi|229262477|gb|ACQ53510.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum Ba4 str.
           657]
          Length = 481

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 228/386 (59%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  LS +++ ++   GY  P+ +Q + IPL+L+  D+   ++TG+GKTA+F +P  
Sbjct: 4   LGFENYELSDEILKSLGRLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIP-- 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I EK     + P+ L+L PTRELA Q+ +          L    + G  P   Q ++L+
Sbjct: 62  -ICEKIELEEKDPQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRELK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR LDH  R  L +  I+  V+DEAD ML+MGFI  ++ +   +P  R T
Sbjct: 121 QRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRVT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ ++++ + + ++ NP+ I +N  + T  TI  C+     +   K +LLQ+++ 
Sbjct: 181 MLFSATIPEKIENLCKKYMNNPQNININPENITTGTINQCYYE--VEDKDKFSLLQKII- 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++ + N IIFCN ++ V  +   ++K+GF+   +HG ++Q+ R++ +  FK+G  Q +V
Sbjct: 238 YKEVVDNSIIFCNTREKVDEVLKHMKKKGFNAIGLHGGMEQKDRLETMKKFKQGEFQFLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ I ++ HV N+++P   E+Y+HRIGRTGRAG+ G A T +    ++ +  I
Sbjct: 298 CTDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFLKDI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKID 386
           E  IEK++           P LE++D
Sbjct: 358 EDYIEKEIP------KRKEPSLEEVD 377


>gi|168180353|ref|ZP_02615017.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum NCTC 2916]
 gi|182668688|gb|EDT80666.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum NCTC 2916]
          Length = 481

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 228/386 (59%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  LS +++ ++   GY  P+ +Q + IPL+L+  D+   ++TG+GKTA+F +P  
Sbjct: 4   LGFENYELSDEILKSLGRLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIP-- 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I EK     + P+ L+L PTRELA Q+ +          L    + G  P   Q ++L+
Sbjct: 62  -ICEKIELEEKDPQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRELK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR LDH  R  L +  I+  V+DEAD ML+MGFI  ++ +   +P  R T
Sbjct: 121 QRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRVT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ ++++ + + ++ NP+ I +N  + T  TI  C+     +   K +LLQ+++ 
Sbjct: 181 MLFSATIPEKIENLCKKYMNNPQNININPENITTGTINQCYYE--VEDKDKFSLLQKII- 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++ + N IIFCN ++ V  +   ++K+GF+   +HG ++Q+ R++ +  FK+G  Q +V
Sbjct: 238 YKEVVDNSIIFCNTREKVDEVLKHMKKKGFNAIGLHGGMEQKDRLETMKKFKQGEFQFLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ I ++ HV N+++P   E+Y+HRIGRTGRAG+ G A T +    ++ +  I
Sbjct: 298 CTDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFLKDI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKID 386
           E  IEK++           P LE++D
Sbjct: 358 EDYIEKEIP------KRKEPSLEEVD 377


>gi|88704045|ref|ZP_01101760.1| ATP-dependent RNA helicase rhlB [Congregibacter litoralis KT71]
 gi|88701872|gb|EAQ98976.1| ATP-dependent RNA helicase rhlB [Congregibacter litoralis KT71]
          Length = 427

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 139/373 (37%), Positives = 216/373 (57%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L P ++  + + G+   +PIQ + +P  LQ HD  G AQTGTGKTA+F++ +   
Sbjct: 46  FHDLDLHPTLMHGIAEIGFEYCSPIQAQILPHTLQGHDAIGKAQTGTGKTAAFLITIFDD 105

Query: 63  LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L K    G   +  PR L++ PTREL  Q+A + E  GK+  L    LIGG+ ++ Q  +
Sbjct: 106 LLKHPHEGERFLGEPRALVIAPTRELVMQIAADAEDLGKHTGLNTCTLIGGMDYQKQLNQ 165

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L R   D+++ TPGR++D   R  L+++ +E+LV+DEADRMLDMGFIP ++ I    P  
Sbjct: 166 LGREVVDLVVATPGRLIDFTGRRDLVLDQVEVLVLDEADRMLDMGFIPQVKRIVRQTPHK 225

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T ++  +S+ +  +   IE+       ++++       A   ++  +L
Sbjct: 226 DYRQTLLFSATFTQDIINLSQQWTTDAITIEIEPDHVATDSVDQRIY--LASSEERFRIL 283

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL+S D   + I+F N++  V  L   L K   +   + G I Q  R K L  FK+G 
Sbjct: 284 VNLLRSDDA-SSVIVFANRRDQVRRLFERLRKASITCGMLSGEIAQAKRTKTLDQFKKGE 342

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+A RG+ +  V HV N+++P   E+Y+HRIGRTGRAG  G + +  +++D  
Sbjct: 343 ISVLVATDVAGRGIHVDGVTHVVNYNLPEDPEDYVHRIGRTGRAGASGTSISFASEDDAF 402

Query: 356 HIDAIEKLIEKKV 368
            +  +E L+ + V
Sbjct: 403 LLPDLEALLGEPV 415


>gi|300783035|ref|YP_003763326.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
 gi|299792549|gb|ADJ42924.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
          Length = 598

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 142/355 (40%), Positives = 214/355 (60%), Gaps = 19/355 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G+ P++V A+ +AG  +   IQ  T+PL +   D+ G A+TG GKT  F +P+L  
Sbjct: 76  FASFGVKPEIVKALGEAGIERTFAIQELTLPLAMAGDDLIGQARTGMGKTLGFGVPLLH- 134

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 RV++P     + L++ PTREL  QVA++ +  GK+  +    + GG P+E Q +
Sbjct: 135 ------RVQVPGDGTPQVLVVVPTRELCIQVANDLKGAGKHLGIRTLAIYGGRPYEPQIE 188

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +G DV+I TPGR+LD   +  L++  +  LV+DEAD MLD+GF+P I+ I  +VP  
Sbjct: 189 ALRKGIDVVIGTPGRLLDLAEQQHLVLGKVRGLVLDEADEMLDLGFLPDIERILRMVPDE 248

Query: 178 RQTLLFSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234
           RQT+LFSATM   +  ++  FL+ P   R E N  S+  E     FV  Y  +S  K  +
Sbjct: 249 RQTMLFSATMPGPIITLARTFLRQPTHIRAEENDASAIHERTTQ-FV--YRAHSMDKPEV 305

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + ++LQ++D     +IF   K+    +   L ++GF+  A+HG++ Q +R + L  F+ G
Sbjct: 306 IARVLQAEDRGLT-MIFSRTKRTAQKVADDLVERGFAAAAVHGDLGQGAREQALRAFRSG 364

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            + ++VA+D+AARG+DI DV HV N+  P+  + Y+HRIGRTGRAGR G A TLV
Sbjct: 365 KVDVLVATDVAARGIDIDDVTHVINYQCPDDEKTYVHRIGRTGRAGRTGVAVTLV 419


>gi|256088378|ref|XP_002580316.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665869|emb|CAZ36555.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 730

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 135/382 (35%), Positives = 216/382 (56%), Gaps = 34/382 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A++ ++ ++   +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 302 WAEMNVADELKDVIKKVGYPEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLNW 361

Query: 63  LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +++     R+      P  +I+ PTRELA Q+ +   K+G+   +    LIGG+  E Q 
Sbjct: 362 IQRLPKLERLEDTEQGPYAIIMAPTRELAQQIEEETVKFGRPLGIKTVSLIGGLSREDQA 421

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            KL  GA+++I TPGR+ D      +++N    +V+DEAD+M+DMGF P + NI + +P 
Sbjct: 422 LKLRMGAEIVIGTPGRLNDVLENRYMVLNQCTYIVLDEADKMIDMGFEPEVNNILTYLPV 481

Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           T                         RQT++F+ATM   +++++ ++L+ P  + + +  
Sbjct: 482 TNEKPDNEDAEDDSKLLSNFATKHKYRQTVMFTATMPPAVERLARSYLRRPAMVYIGSAG 541

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
              E +E   V   ++  K+  LL+ L    D     IIF NQKK    L   LEK G+S
Sbjct: 542 KPTERVEQ-IVYMVSEQEKRRKLLEILAAGLDP--PVIIFVNQKKGADVLAKGLEKLGYS 598

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
              +HG   Q  R   L++ K G  +++VA+D+A RG+DI DV  V N+D+    + Y+H
Sbjct: 599 AVVLHGGKGQEQREYALASLKSGQKEILVATDVAGRGIDIKDVSMVINYDMSKTIDEYVH 658

Query: 332 RIGRTGRAGRHGKAFTLVAKED 353
           RIGRTGRAG+ G A +L+ KED
Sbjct: 659 RIGRTGRAGKSGIAISLLTKED 680


>gi|148825298|ref|YP_001290051.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittEE]
 gi|148715458|gb|ABQ97668.1| ATP-dependent RNA helicase [Haemophilus influenzae PittEE]
          Length = 439

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 136/383 (35%), Positives = 214/383 (55%), Gaps = 6/383 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP L  
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++        
Sbjct: 66  LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QTL
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  EL    +E  L +P +++        + I   +    +    K  LL + ++
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++  + GI+F  ++++   L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 245 TEEVTR-GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381
           ++  E+  K   L G      PP
Sbjct: 364 KRYTEEILKARILAGLEPRTKPP 386


>gi|32035479|ref|ZP_00135436.1| COG0513: Superfamily II DNA and RNA helicases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126209462|ref|YP_001054687.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
           L20]
 gi|303250442|ref|ZP_07336639.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307251483|ref|ZP_07533390.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|126098254|gb|ABN75082.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|302650430|gb|EFL80589.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860947|gb|EFM92953.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 445

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 214/368 (58%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P+++ A+   GY +PT +Q +T+P  L   D+ G A TGTGKTA+F+LP +
Sbjct: 8   MTFEELDLAPQLLKALNKKGYKRPTSVQAETVPHALDGRDLLGSAPTGTGKTAAFLLPAI 67

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QVA+  + + +   L++A + GG+ ++   +  
Sbjct: 68  QHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEVF 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR++ +          +EIL+ DEADRML MGF    + I +   + + 
Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187

Query: 180 TLLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           T LFSAT+  EL    ++  L NP +I+        + I+  +         K  LL +L
Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHA-DNVEHKTKLLARL 246

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + + + M+  I+F  ++++V  L  +L K+G     + G++ Q  R + ++  K+G + +
Sbjct: 247 ISTME-MEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDGVVNV 305

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI DV +V NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D K + 
Sbjct: 306 LVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLG 365

Query: 359 AIEKLIEK 366
            I++  E+
Sbjct: 366 KIKRYTEE 373


>gi|256088376|ref|XP_002580315.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665868|emb|CAZ36554.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 793

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 135/382 (35%), Positives = 216/382 (56%), Gaps = 34/382 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A++ ++ ++   +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 365 WAEMNVADELKDVIKKVGYPEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLNW 424

Query: 63  LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +++     R+      P  +I+ PTRELA Q+ +   K+G+   +    LIGG+  E Q 
Sbjct: 425 IQRLPKLERLEDTEQGPYAIIMAPTRELAQQIEEETVKFGRPLGIKTVSLIGGLSREDQA 484

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            KL  GA+++I TPGR+ D      +++N    +V+DEAD+M+DMGF P + NI + +P 
Sbjct: 485 LKLRMGAEIVIGTPGRLNDVLENRYMVLNQCTYIVLDEADKMIDMGFEPEVNNILTYLPV 544

Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           T                         RQT++F+ATM   +++++ ++L+ P  + + +  
Sbjct: 545 TNEKPDNEDAEDDSKLLSNFATKHKYRQTVMFTATMPPAVERLARSYLRRPAMVYIGSAG 604

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
              E +E   V   ++  K+  LL+ L    D     IIF NQKK    L   LEK G+S
Sbjct: 605 KPTERVEQ-IVYMVSEQEKRRKLLEILAAGLDP--PVIIFVNQKKGADVLAKGLEKLGYS 661

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
              +HG   Q  R   L++ K G  +++VA+D+A RG+DI DV  V N+D+    + Y+H
Sbjct: 662 AVVLHGGKGQEQREYALASLKSGQKEILVATDVAGRGIDIKDVSMVINYDMSKTIDEYVH 721

Query: 332 RIGRTGRAGRHGKAFTLVAKED 353
           RIGRTGRAG+ G A +L+ KED
Sbjct: 722 RIGRTGRAGKSGIAISLLTKED 743


>gi|119178046|ref|XP_001240731.1| conserved hypothetical protein [Coccidioides immitis RS]
 gi|118575172|sp|Q1DP69|DBP2_COCIM RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 542

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 138/373 (36%), Positives = 209/373 (56%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ KPTPIQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 127 FDEAGFPQYVISEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 186

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 187 INAQPLLGPGDG----PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQI 242

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 243 RDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 302

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT ++SAT   E+++++ +FL +  ++ + +   +A       V   + + K+  ++ 
Sbjct: 303 DRQTCMWSATWPKEVRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMIN 362

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L +  D  K+ I IF   K+   ++   L + G+   +IHG+  Q  R  +L+ FK G 
Sbjct: 363 HLERIMDDKKSKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 422

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A TL   ++ K
Sbjct: 423 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAK 482

Query: 356 HI-DAIEKLIEKK 367
              D +  L E K
Sbjct: 483 QARDLVNILTESK 495


>gi|21244553|ref|NP_644135.1| ATP-dependent RNA helicase RhlB [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|32363346|sp|Q8PFZ3|RHLB_XANAC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|21110227|gb|AAM38671.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 571

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 139/373 (37%), Positives = 224/373 (60%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L P ++  +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++  
Sbjct: 11  FSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNR 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q + 
Sbjct: 71  LLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL 130

Query: 119 LERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           L++G DV+I TPGR++D+  + K++ ++  EI V+DEADRM D+GFI  I+ +   +P  
Sbjct: 131 LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER 190

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            TRQTLLFSAT++  + +++   +  P+++ V T S TA  +       +    +K  LL
Sbjct: 191 GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIY--FPSDEEKQTLL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL   +  +  ++F N K  V  +  +LE+ G+ V  + G++ Q+ R  +L+ F++G 
Sbjct: 249 LGLLSRSEGART-MVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367

Query: 356 HIDAIEKLIEKKV 368
            +  IE  IE+K+
Sbjct: 368 SLPDIEAYIEQKI 380


>gi|307251282|ref|ZP_07533202.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306856680|gb|EFM88816.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 445

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 214/368 (58%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P+++ A+   GY +PT +Q +TIP  L   D+ G A TGTGKTA+F+LP +
Sbjct: 8   MTFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAI 67

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QVA+  + + +   L++A + GG+ ++   +  
Sbjct: 68  QHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEVF 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR++ +          +EIL+ DEADRML MGF    + I +   + + 
Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187

Query: 180 TLLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           T LFSAT+  EL    ++  L NP +I+        + I+  +         K  LL +L
Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHA-DNVEHKTKLLARL 246

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + + + M+  I+F  ++++V  L  +L K+G     + G++ Q  R + ++  K+G + +
Sbjct: 247 ISTME-MEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDGVVNV 305

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI DV +V NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D K + 
Sbjct: 306 LVATDVAARGIDINDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLG 365

Query: 359 AIEKLIEK 366
            I++  E+
Sbjct: 366 KIKRYTEE 373


>gi|302188635|ref|ZP_07265308.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. syringae
           642]
          Length = 445

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 139/369 (37%), Positives = 214/369 (57%), Gaps = 5/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 2   FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G A+VR+  R +IL PTRELA Q     E++ +   +   L+ GG  F+ Q   L +
Sbjct: 62  L-IGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+LI TPGR+L+  N G L + ++E+LV+DEADRMLDMGF   ++ +        QT+
Sbjct: 121 VPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 180

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT     L+++    L++P+ ++VN+ S  A    H  +       K+  L    L 
Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVL--NWLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +T K  IIF N K     L   L    +    +HG+ DQ+ R   +   K+G  ++MV
Sbjct: 239 ANETYKKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V NFD+P   ++Y+HR+GRTGRAG  G A +L+   D   + ++
Sbjct: 299 ATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSV 358

Query: 361 EKLIEKKVD 369
           E+ +++  +
Sbjct: 359 ERYLKQSFE 367


>gi|197284022|ref|YP_002149894.1| ATP-dependent RNA helicase DbpA [Proteus mirabilis HI4320]
 gi|194681509|emb|CAR40383.1| ATP-independent RNA helicase [Proteus mirabilis HI4320]
          Length = 457

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 222/370 (60%), Gaps = 9/370 (2%)

Query: 3   FADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FADL  L  + +  + + GY+  TP+Q  ++P +L   DV   A+TG+GKTA+F    L 
Sbjct: 4   FADLHALPAEQLTNLNELGYLTMTPVQEASLPAILAGKDVRAQAKTGSGKTAAF---GLG 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           +L++  A+    ++L+L PTRELA QVA+   +  +   N+ +  L GG+PF  Q   L 
Sbjct: 61  LLQRIDAKQFNTQSLVLCPTRELADQVANELRRLARFLPNIKILTLCGGVPFSIQRDSLI 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             A +++ TPGR+LDH N+  + + +++ LV+DEADRMLDMGF   I +I S +   RQT
Sbjct: 121 HAAHIIVATPGRLLDHLNKQTVTLADVKTLVLDEADRMLDMGFFDDISDIISQMSTQRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  DE+ K+S    Q+P  IE+N+P      +E  F   Y         L Q L 
Sbjct: 181 LLFSATWPDEIAKISRKIQQDPVTIEINSPDELP-AVEQQF---YEISRYGKLGLLQKLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN K++  ++  +L +   SV A+HG+++Q+ R + L  F  G+ +++V
Sbjct: 237 SHHQPNSCVVFCNTKRDCQDVYEALTESNQSVLALHGDMEQKERDQTLIRFANGSCRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++ +  E +IHRIGRT RAG  G A +  A E+I   +A+
Sbjct: 297 ATDVAARGLDIKALEMVINYELSHDPEVHIHRIGRTARAGESGLAISFCAPEEIPRANAL 356

Query: 361 EKLIEKKVDW 370
           E+++  K+DW
Sbjct: 357 EEMLNIKLDW 366


>gi|56784388|dbj|BAD82427.1| putative DEAD box RNA helicase [Oryza sativa Japonica Group]
 gi|56785381|dbj|BAD82339.1| putative DEAD box RNA helicase [Oryza sativa Japonica Group]
 gi|222619731|gb|EEE55863.1| hypothetical protein OsJ_04500 [Oryza sativa Japonica Group]
          Length = 571

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 207/373 (55%), Gaps = 17/373 (4%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRA 68
           A+  +G+V+PTPIQ +  P+ L+  D+ GIAQTG+GKT S++LP L        LE+G  
Sbjct: 170 AIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQGDG 229

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
               P  LIL PTRELA Q+     K+G         + GG P   Q + L RG +++I 
Sbjct: 230 ----PIVLILAPTRELAVQIQQESGKFGSYSRTRSTCIYGGAPKGPQIRDLRRGVEIVIA 285

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR++D    G   +  +  LV+DEADRMLDMGF P I+ I + +   RQTL +SAT  
Sbjct: 286 TPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWP 345

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCF--VATYAQYSKKCALLQQLLQSQDTM 245
            E++ ++  FLQNP ++ + +P   A  +I+     ++ + +Y +   LL  L+     +
Sbjct: 346 REVESLARQFLQNPYKVIIGSPDLKANHSIQQIIEVISEHEKYPRLSKLLSDLMDGSRIL 405

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
               IF   KK+   +   L   G+   +IHG+  Q  R  +L+ FK G   +M A+D+A
Sbjct: 406 ----IFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDVA 461

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARGLD+ D+  V NFD P   E+YIHRIGRTGRAG  G AFT     + K    + K++ 
Sbjct: 462 ARGLDVKDIKCVINFDFPTTLEDYIHRIGRTGRAGASGTAFTFFTLSNAKFSRNLVKILR 521

Query: 366 KKVDWLNGDLSSL 378
           +    +N  L S+
Sbjct: 522 EAGQVVNPALESM 534


>gi|268573560|ref|XP_002641757.1| Hypothetical protein CBG10097 [Caenorhabditis briggsae]
 gi|187031542|emb|CAP29606.1| hypothetical protein CBG_10097 [Caenorhabditis briggsae AF16]
          Length = 486

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 139/412 (33%), Positives = 235/412 (57%), Gaps = 9/412 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA+LG+S  +  A L  G+ KP+ IQ   +P  L+  DV G+A+TG+GKT +F +P+L +
Sbjct: 46  FAELGVSQPLCDACLRLGWTKPSKIQQAALPHALEGKDVIGLAETGSGKTGAFAIPVLQS 105

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  +A       L+L PTRELA Q+   FE  G    L VA+++GG+   AQ   L R
Sbjct: 106 LLDHPQAFF----CLVLTPTRELAFQIGQQFEALGSGIGLIVAVIVGGVDMAAQAMALAR 161

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR++DH    K   +  ++ L++DEADR+L+M F   +  I  ++P  R+T
Sbjct: 162 RPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPKERRT 221

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+    L++P R+ ++T   T + ++  ++    +Y K+  L+   L 
Sbjct: 222 YLFSATMTKKVSKLERASLRDPARVSISTRYKTVDNLKQHYIFIPNKY-KETYLV--YLL 278

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + I+FC      + +   L + G     +HG + Q  R+  L+ FK    +++V
Sbjct: 279 NEHAGNSAIVFCATCATTMQVAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILV 338

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARGLDIP V  V N+D+P+++++Y+HR+GRT RAGR G A T+V + D++    I
Sbjct: 339 CTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGLAITVVTQYDVEAYQKI 398

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           E  + KK+D      + +   +E+   A  N   +   + +K     +R++N
Sbjct: 399 EANLGKKLDEYKCVENEVMVLVERTQEAMENAKVEMKEMDEKRKSGKKRRQN 450


>gi|237806841|ref|YP_002891281.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237499102|gb|ACQ91695.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 469

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 145/376 (38%), Positives = 217/376 (57%), Gaps = 7/376 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           L L P ++  +   GY + TPIQ +++P VLQ  DV   A+TG+GKTA+F L +L  L+ 
Sbjct: 18  LALQPALLENLTALGYSEMTPIQAQSLPAVLQGKDVLAQAKTGSGKTAAFALGLLQGLDV 77

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGAD 124
               V+    L+L PTRELA QVA    +  +   N+ V  L GG+P   Q   LE+GA 
Sbjct: 78  KSLNVQ---GLVLCPTRELADQVAGEIRRLARLIPNVKVLTLCGGMPIGPQFSSLEQGAH 134

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGR+  H ++  L +  ++  V+DEADRMLDMGF   ++ I  + P  RQTLLFS
Sbjct: 135 IVVGTPGRVQKHLDKESLSLAALKTWVLDEADRMLDMGFADAMREIAKVCPRQRQTLLFS 194

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT  +++Q++S  F +NP  + V +  S  + IE  F     Q +K  ALL+ L   Q  
Sbjct: 195 ATYPEDIQRLSTEFQRNPLSVRVESTHSAVQ-IEQRFFELPNQEAKFPALLKLLQHYQP- 252

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            ++ +IFCN K     +  +L  QG+S  A++G+++QR R +++  F   +  ++VA+D+
Sbjct: 253 -RSTVIFCNMKHQTQQVADALSAQGYSALALNGDLEQRERDQVVVRFSNQSCAILVATDV 311

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           AARGLDI ++  V N+D+    E ++HRIGRTGRAG+ G A TL        +  IE   
Sbjct: 312 AARGLDIKELQAVVNYDLTPDPEIHVHRIGRTGRAGQTGLALTLTTASQTNRVLQIEDYQ 371

Query: 365 EKKVDWLNGDLSSLNP 380
           + +  W N D    NP
Sbjct: 372 QSQAVWGNLDELKKNP 387


>gi|238061200|ref|ZP_04605909.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing
           protein [Micromonospora sp. ATCC 39149]
 gi|237883011|gb|EEP71839.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing
           protein [Micromonospora sp. ATCC 39149]
          Length = 557

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 133/363 (36%), Positives = 209/363 (57%), Gaps = 2/363 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA+LG  P+ V A+ +AG  +   IQ   IP+ L+  D+ G A TGTGKT  F +P+L  
Sbjct: 53  FAELGARPETVEALAEAGITRAFAIQEYAIPIALRGVDMIGQAPTGTGKTLGFGVPLLER 112

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +         +P+ L++ PTREL  QVA +    G+   + V  + GG+ +E Q   L +
Sbjct: 113 VFAPAEGGDGVPQALVVVPTRELGIQVAKDLAAAGRTRGVRVLPIYGGVAYEPQIDALRK 172

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G ++L+ TPGR++D   +  L ++ +  LV+DEADRMLD+GF+  ++ I +++P  RQT+
Sbjct: 173 GVEILVGTPGRLMDLQKQKHLRLDRVRALVLDEADRMLDLGFLDDVEKILAMLPEDRQTM 232

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +  +S  FL+ P  I     + T  + +   +        K  ++ ++LQ+
Sbjct: 233 LFSATMPDPIVTLSRRFLRRPMTIHAGHTAETGPSPQTEQLVYRTHSMNKIEIVARILQA 292

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      +IF   K+    +   L+ +GF+V A+HG++ Q +R + L  F+ G I ++VA
Sbjct: 293 EGRGLT-MIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDILVA 351

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HV N+D P   + Y HRIGRTGRAG  G A T V  +D+     I+
Sbjct: 352 TDVAARGLDVSGVTHVINYDCPEDQDTYTHRIGRTGRAGATGVAVTFVDWDDMPRWRIID 411

Query: 362 KLI 364
           K +
Sbjct: 412 KTL 414


>gi|89093208|ref|ZP_01166158.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
 gi|89082504|gb|EAR61726.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
          Length = 497

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 145/394 (36%), Positives = 227/394 (57%), Gaps = 11/394 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L   V+ A+ D  +   T IQ +TIP  L   D+ G AQTGTGKTA+F+L ++
Sbjct: 54  MRFHDFNLPDDVLHAISDLKFEYCTGIQAETIPAALAGKDIIGKAQTGTGKTAAFLLGII 113

Query: 61  TIL----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           T L     + + R+  PR L++ PTRELA Q+A++ +   K  +L V  L+GG+ +E Q 
Sbjct: 114 TDLIDYPLEEKPRLGEPRALVVAPTRELALQIAEDAKGLAKYTDLHVVSLVGGMDYEKQR 173

Query: 117 KKLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           +KL++   D+L+ TPGR++D  NR  + + N+E+LV+DEADRML MGFIP ++ I    P
Sbjct: 174 QKLKKKPVDILVATPGRLIDFVNRKDVDLWNVEVLVLDEADRMLSMGFIPDVRTIVRNTP 233

Query: 176 ---FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                RQTLL+SAT TD++  ++E +  +  +IE+     T + +         +  +K 
Sbjct: 234 RKGADRQTLLYSATFTDDILNLAEQWTLDAVKIEIAPEIKTTDNVTQTVYLVSGE--EKY 291

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL+  +  +D  +  I+F N++     L   L K G     + G I Q+ R++ L +F+
Sbjct: 292 RLLRNYM-DKDHAEKVIVFGNRRDETRRLADRLCKDGIRAALMSGEIPQQKRVRTLEDFR 350

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G IQ++VA+D+A RG+ I  V HVFN+ +P   ++Y+HRIGRTGRAG  G +     ++
Sbjct: 351 SGKIQVLVATDVAGRGIHIDGVTHVFNYQLPEDPDDYVHRIGRTGRAGATGASICFACED 410

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
           D   I  IE     K++ ++ +   L  P  K++
Sbjct: 411 DSFLIPEIEAETGVKLECVHPEAELLLEPKAKVN 444


>gi|171910495|ref|ZP_02925965.1| DEAD/DEAH box helicase-like protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 673

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 146/361 (40%), Positives = 224/361 (62%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL+P ++ A+   G+ +P+PIQ K IP  L+  DV G +QTG+GKT +F +P   +
Sbjct: 47  FTELGLAPDILKAMTALGFEQPSPIQEKGIPPALEGRDVVGQSQTGSGKTMAFAIP---V 103

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLER 121
           ++K   R R  R LI+ PTRELA QV +   K   +     AL I GG  ++ Q + L  
Sbjct: 104 VQKIDPRDRGVRALIMCPTRELAMQVCEEVAKLTVHKPGLKALPIYGGATYDRQIRGLRD 163

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRILD   RG L ++ ++ LV DEAD MLDMGF   I ++ +LVP  RQTL
Sbjct: 164 GAQIVVGTPGRILDFLERGMLRLDALQTLVFDEADEMLDMGFREDIDSLMALVPENRQTL 223

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT+   ++ + E++ +N   I +   + T  TIE  +    ++   K  +L +LL  
Sbjct: 224 FFSATLAGPIRHLVESYTKNAALITIEHKALTVPTIEQRYYEVNSR--SKIEVLCRLLDI 281

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++  +  I+F N KK V ++  +L  + + V  +HG+++Q  R +++ NF+ G ++++ A
Sbjct: 282 ENP-RLAIVFANTKKAVDDITDALMARSYGVDRLHGDLNQTMRDRVMKNFRAGNVEVLAA 340

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ DV  V NFD+P   E+Y+HRIGRTGRAGR GKA +LV+  DI  +  I+
Sbjct: 341 TDVAARGLDVDDVDLVVNFDLPYDEEDYVHRIGRTGRAGRSGKAMSLVSGRDIFLLQRIQ 400

Query: 362 K 362
           +
Sbjct: 401 R 401


>gi|297824215|ref|XP_002879990.1| hypothetical protein ARALYDRAFT_483345 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297325829|gb|EFH56249.1| hypothetical protein ARALYDRAFT_483345 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 627

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 145/362 (40%), Positives = 207/362 (57%), Gaps = 23/362 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++ L   +   +    YVKPTP+Q   IP++L+  D+   AQTG+GKTA+F  P+++ 
Sbjct: 159 FAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISG 218

Query: 63  LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           + K +       +R   P  +IL PTRELA+Q+ D  +K+     + V +  GG P   Q
Sbjct: 219 IMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQ 278

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++LERG D+L+ TPGR+ D   R ++ M  I  L +DEADRMLDMGF P I+ I   + 
Sbjct: 279 LRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMD 338

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTLLFSAT   E+Q+++ +FL N   + V    S+ + I       +   S K
Sbjct: 339 MPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQ--RVEFVLDSDK 396

Query: 232 CALLQQLLQSQDTMKNGI--------IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + L  LL +Q   +NGI        +F   K+   +L + L   GF   +IHG+  Q+ 
Sbjct: 397 RSHLMDLLHAQ--RENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQE 454

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L  FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G
Sbjct: 455 REVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 514

Query: 344 KA 345
            A
Sbjct: 515 LA 516


>gi|255013213|ref|ZP_05285339.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_7]
          Length = 587

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 138/352 (39%), Positives = 209/352 (59%), Gaps = 8/352 (2%)

Query: 20  GYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
           GY  P P+Q + IP +L + +DV  +AQTGTGKTA++ LP   IL+K       P+ LIL
Sbjct: 2   GYESPMPVQEEVIPFLLGEDNDVIALAQTGTGKTAAYGLP---ILQKINVSQYQPQALIL 58

Query: 79  EPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
            PTREL  Q+AD+   Y K   NL V  + GG   E+Q K L+RG  V++ TPGR++D  
Sbjct: 59  CPTRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIESQIKTLKRGVHVVVATPGRLIDLM 118

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
           NR  + ++N++ +++DEAD ML+MGF   I  I + +P  R  LLFSATM  E+  +++ 
Sbjct: 119 NRKTVDLSNVKNVILDEADEMLNMGFTDSINEILAAIPENRNMLLFSATMPKEIASITKK 178

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
           ++++PK I +   +   + I   +    AQ   K   L++L      +  GIIFC  +K 
Sbjct: 179 YMKDPKEIVIGRKNEGNKNIRDIYYMVRAQ--DKYLALKRLADYYPNIY-GIIFCRTRKE 235

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
              +   L + G++  ++HG + Q  R  ++  F+   IQL+VA+D+AARGLD+ D+ HV
Sbjct: 236 TQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRIKNIQLLVATDVAARGLDVDDLTHV 295

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
            N+ +P+  E+Y HR GRTGRAG+ G A ++    +   I  IE++I KK D
Sbjct: 296 INYGLPDEVESYTHRRGRTGRAGKTGIAISICHVREKGKIREIERIINKKFD 347


>gi|54294961|ref|YP_127376.1| ATP-dependent RNA helicase DbpA [Legionella pneumophila str. Lens]
 gi|53754793|emb|CAH16280.1| hypothetical protein lpl2040 [Legionella pneumophila str. Lens]
          Length = 468

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 139/373 (37%), Positives = 224/373 (60%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L  +++ ++  + Y   TPIQ++++P++L+  D+   A+TG+GKTA+F L +L
Sbjct: 11  LSFSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDLIAQAKTGSGKTAAFALSLL 70

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L+     V+    L+L PTRELA QV+    +      N+ +  L GGIP + Q   L
Sbjct: 71  NNLKISFFAVQ---ALVLCPTRELAEQVSQAIRRLACFMPNVKIINLSGGIPMQPQLDSL 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA +++ TPGRIL H     L ++ ++ L++DEADRMLDMGF   I+NI S+ P  RQ
Sbjct: 128 RHGAHIIVGTPGRILKHLKNTSLDLSQVKALILDEADRMLDMGFFDDIKNIISVCPKQRQ 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +E++++S+ F+++PK + V TP    +  +H +    +++++K  LL+ LL
Sbjct: 188 TLLFSATYPEEIKRLSKQFMKDPKEVHVVTPPEEIDIEQHFY--EVSRHAQKFPLLKSLL 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                + + +IFCN K+  + +   L  +GFS  A++G+++Q  R   +  F   +  ++
Sbjct: 246 LHYQPV-SVLIFCNTKQQTIEVTDQLINEGFSAIALNGDMEQIERDLAVLRFANKSCSIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++  V NFD+    + +IHRIGRTGRAG  G A ++V   D + I A
Sbjct: 305 VATDVAARGLDIKELSAVINFDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPADAQRICA 364

Query: 360 IEKLIEKKVDWLN 372
           IE      + W N
Sbjct: 365 IEDNYPHPIHWGN 377


>gi|120554694|ref|YP_959045.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120324543|gb|ABM18858.1| DEAD/DEAH box helicase domain protein [Marinobacter aquaeolei VT8]
          Length = 423

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 143/396 (36%), Positives = 230/396 (58%), Gaps = 15/396 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L  +++ A+   G+   TPIQ +T+P  L   D+ G AQTGTGKTA+F++  +
Sbjct: 11  LRFSDLNLDKRLLDAISKIGFEYCTPIQAETLPWTLACEDLIGQAQTGTGKTAAFLITAI 70

Query: 61  -----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                T +++       PR L L PTRELA Q+A + E+        V  ++GG+ ++ Q
Sbjct: 71  QSLLETPIDEKERFASEPRVLALAPTRELAMQIAKDAEQLCHYTGHNVVTVVGGMNYDKQ 130

Query: 116 NKKLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT-SL 173
            ++L+    D+L+ TPGR++D      + ++ ++IL++DEADRMLDMGFIP ++ I    
Sbjct: 131 REQLQNEIVDILVATPGRLIDFLGSQDVFLDQLDILILDEADRMLDMGFIPDVKRIIRKC 190

Query: 174 VPF-TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            P   RQTLLFSAT   ++  ++  + +N + +E+     TAE +E          ++K 
Sbjct: 191 TPKDERQTLLFSATFNQDVLNLASMWTRNAEFVEIEPEQKTAERVEQTVF--LVSDNEKL 248

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            +L   L+  +  K  I+F N++    +L   L+ QG  V  + G I Q  R+K L  FK
Sbjct: 249 PVLVNYLKRPEVEK-AIVFANRRDQCRDLEEDLKNQGVKVALMSGEIAQNKRLKTLDQFK 307

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +G IQ++VA+D+A RG+ +  V HVFN+++P+ AE+Y+HRIGRTGRAG+ G + +   +E
Sbjct: 308 KGQIQVLVATDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGKTGVSVSFAGEE 367

Query: 353 DIKHIDAIEKLIEKKVDWLNGD----LSSLNPPLEK 384
           D   +  IEK I +K+     D    ++  NPP+ +
Sbjct: 368 DAFALPEIEKYISQKLKTAVPDENLTVAMDNPPITR 403


>gi|325953815|ref|YP_004237475.1| DEAD/DEAH box helicase [Weeksella virosa DSM 16922]
 gi|323436433|gb|ADX66897.1| DEAD/DEAH box helicase domain protein [Weeksella virosa DSM 16922]
          Length = 586

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 215/371 (57%), Gaps = 8/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPM 59
           M F DLGL P+++ AV D G+V P+PIQ K IP +L    DV  +AQTGTGKTA+F LP+
Sbjct: 1   MTFKDLGLQPEILSAVEDMGFVSPSPIQEKAIPQILSSDQDVIALAQTGTGKTAAFGLPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
           L  L+  +  V+    +IL PTREL  Q+A   E +  +   + +  + GG     Q K 
Sbjct: 61  LNQLDLSQKNVQ---AIILCPTRELCLQIAKEMESFAAHMQGVKIQAVYGGADIVKQIKG 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L     +++ TPGR +D   R  L +NNI   V+DEAD ML+MGF   I NI    P  +
Sbjct: 118 LRDNPQIVVGTPGRTMDLIKRNALKINNITWTVLDEADEMLNMGFRDEIDNILETTPEEK 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM  E+++++  ++  P  I V+  +  ++ IEH +    A  S +   L+++
Sbjct: 178 QTLLFSATMPREVRRIAAEYMFKPVEIAVSKVNMASKNIEHQYYMVRA--SDRYLALKRI 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                ++  GI+FC  ++    +   L + G++  A+HG++ Q  R  ++  F++  IQ+
Sbjct: 236 ADYYPSIY-GIVFCKTRRETKEVADRLMQDGYNADALHGDLSQAQRDFVMDKFRKKNIQI 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ ++ HV N+ +P+  E Y+HR GRTGRAG  G +  +    + + + 
Sbjct: 295 LVATDVAARGIDVNELTHVINYSLPDDPEVYVHRSGRTGRAGNKGISIIIAHSREGRKVK 354

Query: 359 AIEKLIEKKVD 369
            +EK I   ++
Sbjct: 355 DVEKFISAPIE 365


>gi|120436503|ref|YP_862189.1| ATP-dependent RNA helicase [Gramella forsetii KT0803]
 gi|117578653|emb|CAL67122.1| RhlE-like DEAD box family ATP-dependent RNA helicase [Gramella
           forsetii KT0803]
          Length = 455

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 138/369 (37%), Positives = 217/369 (58%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL L+  +  A+ D  +  PTPIQ +    ++   DV GIAQTGTGKT +++LP+L
Sbjct: 9   LSFQDLNLNTPLRNALEDLNFQTPTPIQEQAFSSIMSGRDVVGIAQTGTGKTFAYLLPLL 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+    +   PR LI+ PTREL  QV +  EK  K  NL VA + GG+    Q++ L 
Sbjct: 69  RMLKYSEQK--NPRILIMVPTRELVVQVVEEIEKLAKYINLRVAGVYGGVNINTQHQDLM 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TP R+ D   R  + + +I+  VIDE D MLD+GF   + NI  L+P  RQ+
Sbjct: 127 QGLDIVVATPRRLYDLVLRRAVQLKSIQKFVIDEVDVMLDLGFKFQVNNIIELLPKNRQS 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSATMT+ ++++ +   + P++I V    +  E I+         Y+ K  LL+ LL 
Sbjct: 187 IMFSATMTETVEEMIDTNFKAPEKISVAVSGTPLENIDQRGYKIPNFYT-KANLLKHLLA 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +T +  +IF   K+    L  +L E+       +H    Q  R+K + +F EG  +++
Sbjct: 246 DTETYQKVLIFIGDKRIADRLYENLGEEFPGDTSLVHTGKSQNYRLKSVGDFDEGLSRIL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+ ARGLDI +V HV NFD P   ENY+HRIGRTGRA + G++     + + +++DA
Sbjct: 306 IATDVMARGLDIENVSHVVNFDTPQYPENYMHRIGRTGRAEKKGQSLLFTTEAEQEYLDA 365

Query: 360 IEKLIEKKV 368
           IE+L++ +V
Sbjct: 366 IEELMQTEV 374


>gi|328884859|emb|CCA58098.1| putative ATP-dependent RNA helicase [Streptomyces venezuelae ATCC
           10712]
          Length = 874

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 132/350 (37%), Positives = 208/350 (59%), Gaps = 20/350 (5%)

Query: 31  TIPLVLQRHDVCGIAQTGTGKTASFVLPML------TILEKGRAR----VRMPRTLILEP 80
           T+P+ L   DV G A+TGTGKT  F LP+L      T +E GRA+       P+ L++ P
Sbjct: 2   TLPVALSGTDVIGQAKTGTGKTLGFGLPILERVTVPTDVEAGRAKPEQLTDAPQALVVVP 61

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TREL  QV ++    GK  N+ V  + GG  +E Q + L++G DV++ TPGR+LD   + 
Sbjct: 62  TRELCQQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGVDVIVGTPGRLLDLAGQR 121

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200
           KL ++++++LV+DEAD MLD+GF+P ++ I +++P  RQT+LFSATM   +  ++  ++ 
Sbjct: 122 KLDLSHVKVLVLDEADEMLDLGFLPDVEKIINMLPAKRQTMLFSATMPGAVIGLARRYMS 181

Query: 201 NPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQSQDTMKNG----IIFCNQK 255
            P  I   +P     T+ +     Y A    K  ++ ++LQ+     NG    +IFC  K
Sbjct: 182 QPTHIRATSPDGEGATVANIKQHVYRAHNMDKPEMVSRILQA-----NGRGLAMIFCRTK 236

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           +   ++   LE++GF+  A+HG++ Q +R + L  F+ G + ++V +D+AARG+D+  V 
Sbjct: 237 RTAADIAEQLERRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVT 296

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           HV N+  P   + ++HR+GRTGRAG  G A TLV  +DI     I K +E
Sbjct: 297 HVINYQSPEDEKTFLHRVGRTGRAGNKGTAVTLVDWDDIPRWQLINKALE 346


>gi|146305516|ref|YP_001185981.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina ymp]
 gi|145573717|gb|ABP83249.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina ymp]
          Length = 458

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 217/392 (55%), Gaps = 13/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L LS  +   +   GY + TPIQ  ++PL+L+  D+   A+TG+GKTA+F + +L  
Sbjct: 6   FASLPLSAAMQANLAAIGYAEMTPIQAASLPLILKGRDLIAQAKTGSGKTAAFGIGLLHP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L     R    + L+L PTRELA QVA    +  +   N+ V  L GG+PF  Q   LE 
Sbjct: 66  LNP---RYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI +H  +G L ++ +  LV+DEADRMLDMGF+  I  I    P  RQTL
Sbjct: 123 GAHVIVGTPGRIQEHLRKGTLKVDGLNTLVLDEADRMLDMGFVDSISEIIEQTPARRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++  FL+ P+R+EV       +  +  +     Q  +  + L +  + 
Sbjct: 183 LFSATYPAGIEQLAARFLRTPERVEVEAQHDDGQIEQRFYEIAPGQRMEAVSTLLRHFRK 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q      + FC  ++    L   LE +  S  A+HG+++QR R +IL+ F   ++ ++VA
Sbjct: 243 QPV----VAFCATRQQCDELAAQLEAEKISAAALHGDLEQRDRDQILALFANRSLSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   AE +IHRIGR+GRAG  G A +LVA  +     AIE
Sbjct: 299 TDVAARGLDIAGLEMVINVELSRDAEVHIHRIGRSGRAGEKGLALSLVAPAEAGRAQAIE 358

Query: 362 KLIEKKVDWL-----NGDLSSLNPPLEKIDIA 388
            L  +++ W            L PP+  + IA
Sbjct: 359 TLQGRELAWYPLPAAKASGEPLLPPMHTLCIA 390


>gi|325928804|ref|ZP_08189971.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
 gi|325540777|gb|EGD12352.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
          Length = 571

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 139/373 (37%), Positives = 224/373 (60%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L P ++  +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++  
Sbjct: 11  FSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNR 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q + 
Sbjct: 71  LLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL 130

Query: 119 LERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           L++G DV+I TPGR++D+  + K++ ++  EI V+DEADRM D+GFI  I+ +   +P  
Sbjct: 131 LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER 190

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            TRQTLLFSAT++  + +++   +  P+++ V T S TA  +       +    +K  LL
Sbjct: 191 GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIY--FPSDEEKQTLL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL   +  +  ++F N K  V  +  +LE+ G+ V  + G++ Q+ R  +L+ F++G 
Sbjct: 249 LGLLSRSEGART-MVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367

Query: 356 HIDAIEKLIEKKV 368
            +  IE  IE+K+
Sbjct: 368 SLPDIEAYIEQKI 380


>gi|325577716|ref|ZP_08147991.1| ATP-dependent RNA helicase RhlB [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160461|gb|EGC72587.1| ATP-dependent RNA helicase RhlB [Haemophilus parainfluenzae ATCC
           33392]
          Length = 419

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 150/412 (36%), Positives = 231/412 (56%), Gaps = 9/412 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P V  A+ D G+   TPIQ  ++P+ LQ  DV G AQTGTGKT +F+      
Sbjct: 11  FADLPLHPIVQKALQDKGFEYCTPIQALSLPITLQGKDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L   +       PR LIL PTRELA Q+ ++ E   K   L  AL  GG  ++ Q K +E
Sbjct: 71  LLTHQPDFATSQPRALILAPTRELAVQINNDAELLAKTSGLRTALAYGGDGYDKQLKAIE 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TR 178
            G D+LI T GR++D+  +G + +++I+++V+DEADRM D+GFI  I+ +    P    R
Sbjct: 131 AGVDILIGTTGRVIDYVKQGIIRLDDIQVVVLDEADRMFDLGFIRDIRYLLRKCPSPQER 190

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237
            T+LFSAT++ ++++++   + +P+ IE+     T   I E  F   Y     K  LL  
Sbjct: 191 LTMLFSATLSYKVRELAFEDMNSPEYIEIEPEQKTGHRIKEELF---YPSNEDKIPLLLT 247

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++ ++  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G + 
Sbjct: 248 LME-EEWPERCIVFANTKHKCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFADGELD 306

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL I DV HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 307 ILVATDVAARGLHISDVTHVFNFDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNL 366

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            AIE+ I   +     D +SL   + K    +H+   +      + T + R+
Sbjct: 367 PAIEEYIGHSIPVSQYDPNSLISDIPKPYRLKHHSTPQTRNTSTRKTNYRRK 418


>gi|78049510|ref|YP_365685.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|123584009|sp|Q3BNH8|RHLB_XANC5 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|78037940|emb|CAJ25685.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 573

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 139/373 (37%), Positives = 224/373 (60%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L P ++  +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++  
Sbjct: 11  FSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNR 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q + 
Sbjct: 71  LLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL 130

Query: 119 LERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           L++G DV+I TPGR++D+  + K++ ++  EI V+DEADRM D+GFI  I+ +   +P  
Sbjct: 131 LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER 190

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            TRQTLLFSAT++  + +++   +  P+++ V T S TA  +       +    +K  LL
Sbjct: 191 GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIY--FPSDEEKQTLL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL   +  +  ++F N K  V  +  +LE+ G+ V  + G++ Q+ R  +L+ F++G 
Sbjct: 249 LGLLSRSEGART-MVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367

Query: 356 HIDAIEKLIEKKV 368
            +  IE  IE+K+
Sbjct: 368 SLPDIEAYIEQKI 380


>gi|163839948|ref|YP_001624353.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
 gi|162953424|gb|ABY22939.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
          Length = 565

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 153/455 (33%), Positives = 246/455 (54%), Gaps = 28/455 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  +   +V A+ DAG V P PIQ  T+P+ L  HD+ G A+TGTGKT  F +P+L  
Sbjct: 38  FADFNVRADIVEALADAGIVHPFPIQSMTLPVALGGHDIIGQAKTGTGKTLGFGVPVLQR 97

Query: 63  L----EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    ++G   + +P   + LI+ PTRELA QVA++ +   +     +  + GG  FE Q
Sbjct: 98  VTAPKDEGYDALPVPGAPQALIVVPTRELAVQVANDLQTAARKRGARITTIYGGRAFEPQ 157

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L +G +V++ TPGR++D F +  L + N+ ++V+DEAD MLD+GF+P ++ + +  P
Sbjct: 158 IESLTKGVEVVVGTPGRLIDLFKQRHLNLKNVRMVVLDEADEMLDLGFLPDVETLMAATP 217

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234
             RQT+LFSATM   +  ++  ++  P  I    P     T        Y  +S  K  +
Sbjct: 218 AVRQTMLFSATMPGPIVAMARRYMTQPTHIRAADPDDEGLTKRDIRQLVYRAHSMDKIEV 277

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + ++LQ++   +  IIF   K+    +   L ++GF+  AIHG++ Q +R + L  F+  
Sbjct: 278 VARILQARGRGRT-IIFTKTKRTAAKVAEELAERGFASAAIHGDLGQGAREQALRAFRNN 336

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+      + Y+HR+GRTGRAG  G A T V  +D+
Sbjct: 337 KVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWDDM 396

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                I K +    D           P+E    + H ++  +  IP+ + G  R  K   
Sbjct: 397 PGWGLINKTLGLPFD----------EPVETYSSSPHLYSDLD--IPEGTKG--RLPK--- 439

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGF-RGN 448
           SQ++H  L  +E +  L +  + +   S G  RGN
Sbjct: 440 SQRTHAGLN-AEVLEDLGETGKRHGGQSTGSGRGN 473


>gi|254363222|ref|ZP_04979270.1| ATP-dependent RNA helicase [Mannheimia haemolytica PHL213]
 gi|153095119|gb|EDN75666.1| ATP-dependent RNA helicase [Mannheimia haemolytica PHL213]
          Length = 444

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 214/368 (58%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LSP+++ A+   GY +PT IQ  TIP  L+  D+ G A TGTGKTA+F+LP +
Sbjct: 5   MTFEELDLSPQLLKALAHKGYNRPTAIQQATIPAALEGRDLLGSAPTGTGKTAAFLLPAI 64

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QVA+  +   K   L++A + GG+ ++   +  
Sbjct: 65  QHLLDYPRRKPGAPRILILTPTRELAMQVAEQAQALAKFTQLSIATITGGVAYQNHGEVF 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++ +          +E+L+ DEADRML MGF    + I +   + + 
Sbjct: 125 NKNQDIVVATPGRLMQYIKEENFDCRAVEVLIFDEADRMLQMGFGQDAEKIAAETRWRKH 184

Query: 180 TLLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           T LFSAT+  EL +  +E  L +P +++        + I+  +         K  LL ++
Sbjct: 185 TWLFSATLEGELLEDFAERLLNDPIKVDAEPSRRERKKIQQWYYHA-DNVEHKTKLLARI 243

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S+ +++  I+F  ++++V  L  +L K+G     + G + Q  R + ++  KEG + +
Sbjct: 244 I-SEFSVERAIVFVRRREDVRELSETLRKRGIRSTYLEGEMAQTQRNQAINRLKEGVVNV 302

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI D+  V N+D+P  A+ Y+HRIGRT RAG+ G A +LV   D K + 
Sbjct: 303 LVATDVAARGIDIDDIDFVLNYDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLG 362

Query: 359 AIEKLIEK 366
            I++  E+
Sbjct: 363 KIKRYTEE 370


>gi|326800907|ref|YP_004318726.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21]
 gi|326551671|gb|ADZ80056.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21]
          Length = 420

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 140/372 (37%), Positives = 223/372 (59%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF++     +++  ++  G+  PTPIQ + IP++ ++HD+   AQTGTGKTAS++LP++
Sbjct: 1   MDFSEFNFDDRLLEGLMSMGFKIPTPIQQQAIPVIAEKHDLIACAQTGTGKTASYLLPLM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT---VALLIGGIPFEAQNK 117
             + K   R  +   LIL PTRELA Q+    +       +T   V     G+ +E Q +
Sbjct: 61  DAICKNDDRPSIS-ALILAPTRELALQIDQQIQGLAYFTGITSIAVYGGGDGVGYEQQRR 119

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G D++I TPGR++ H +   + +  I+ L++DEADRMLDMGF   I  I   +P  
Sbjct: 120 SLKEGVDIVIATPGRLIAHMSSSTVRLEKIDFLILDEADRMLDMGFKDDILRIVRQLPEQ 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM  +++  ++  L+NP+++ +   S  AE I+  +  T+ +  +K  LL+ 
Sbjct: 180 RQTLLFSATMPQKIRLFAKALLKNPQQVNIAI-SQPAEKIKQQYYRTFDE--QKVTLLKH 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L S D+  + IIFC+ K+NV  L   L K    V + H ++ Q  R +IL +FK   + 
Sbjct: 237 IL-STDSFYSIIIFCSTKENVKLLEKELFKNDLKVRSFHSDLQQDEREQILLDFKNRKLN 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+ +RG+DI  +  V N+DVP   E+YIHRIGRT RA R G A T V   D + +
Sbjct: 296 ILVGTDVLSRGIDIEGIDLVVNYDVPGDPEDYIHRIGRTARAERTGTAITFVNNRDFRKL 355

Query: 358 DAIEKLIEKKVD 369
            +IEK++++ ++
Sbjct: 356 LSIEKMMDRTIE 367


>gi|293373074|ref|ZP_06619442.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CMC 3f]
 gi|292631960|gb|EFF50570.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CMC 3f]
          Length = 422

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 135/372 (36%), Positives = 221/372 (59%), Gaps = 9/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ + IP++L+  D+  +AQTGTGKTA+F+LP+L
Sbjct: 1   MKFSELQLNANVLEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             L +G+        +I+ PTRELA Q+    E +     ++   + GG   I FE Q K
Sbjct: 61  NKLSEGKHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIAKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY-SKKCALLQ 236
           RQT++FSATM  ++Q+++   L NP  I+     + ++  E    A Y  Y ++K  +++
Sbjct: 181 RQTIMFSATMPAKIQQLANTILNNPSEIK----PAVSKPAEKIIQAAYVCYENQKLGIIR 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L   +   +  I+F + K  V  +  +L+    +V  +H +++Q  R  ++  FK G I
Sbjct: 237 SLFMDE-VPERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRI 295

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ ARG+DI D+  V NFDVP+ +E+Y+HRIGRT RA   G A T +++++  +
Sbjct: 296 NILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQSN 355

Query: 357 IDAIEKLIEKKV 368
             +IE  +EK++
Sbjct: 356 FKSIENFLEKEI 367


>gi|56461463|ref|YP_156744.1| ATP-dependent RNA helicase RhlB [Idiomarina loihiensis L2TR]
 gi|61214743|sp|Q5QYF8|RHLB_IDILO RecName: Full=ATP-dependent RNA helicase rhlB
 gi|56180473|gb|AAV83195.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 425

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 140/368 (38%), Positives = 216/368 (58%), Gaps = 10/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L PK+  A+  AG+   TPIQ  ++P+ L   DV G AQTGTGKT +F+L     
Sbjct: 11  FADLALHPKIQQAISSAGFEYCTPIQALSLPVALSNRDVAGQAQTGTGKTLAFLLATFNR 70

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L +  +  +    PR LI+ PTRELA Q+A + +   ++  L + ++ GG  +E Q ++L
Sbjct: 71  LMQNESSEKTESGPRALIMAPTRELAIQIAHDADALIEHCGLKMGVIYGGEGYEGQKEQL 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FT 177
               D+L+ T GR++D + +    + +IE++V+DEADRM D+GFI  I+ +   +P    
Sbjct: 131 AAQPDILVGTTGRLIDFYKQDLFSLKDIEVVVLDEADRMFDLGFIDDIRYLLQKMPDPSK 190

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           R  LLFSAT++  +Q+++   +  P ++EV     TA  + E  F   Y    +K  LL 
Sbjct: 191 RLNLLFSATLSYRVQELAYEHMNAPTKLEVEPLQKTATRVTEELF---YPSKPEKFPLLL 247

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ +D     I+F N K     +   L         + G++ Q+ R++IL +F EG +
Sbjct: 248 TLIE-EDWPDKAIVFANTKHGCEKVHGWLVANEHRAGLLTGDVPQKKRLRILEDFAEGKL 306

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             +VA+D+AARGL IP+V HV+NFD+P+  E+Y+HRIGRTGRAG  G A +L  +E + +
Sbjct: 307 DFLVATDVAARGLHIPEVTHVYNFDLPDDCEDYVHRIGRTGRAGASGAAISLACEEYVYN 366

Query: 357 IDAIEKLI 364
           + AIE  I
Sbjct: 367 LPAIEDYI 374


>gi|227550039|ref|ZP_03980088.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227077885|gb|EEI15848.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 430

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 211/364 (57%), Gaps = 10/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG++ ++V A+ + G      IQ    PL L   DV G A+TG GKT +F +P+L  
Sbjct: 15  FAELGVAAEIVDALHELGITHTFSIQELAAPLALAGKDVIGQARTGMGKTYAFGVPLLDR 74

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +        +   PR LI+ PTRELA QV ++  +  K   + +  + GG P+EAQ   L
Sbjct: 75  VFDDADVAELDGTPRALIIVPTRELAVQVGEDLSRAAKYTPVRITTVYGGRPYEAQIAVL 134

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DV++ TPGR++D  NRG L ++ + +LV+DEAD MLD+GF P IQ + + +P   Q
Sbjct: 135 SSGVDVVVGTPGRLIDLLNRGNLQLDRVAVLVLDEADEMLDLGFFPDIQKLWAALPQPVQ 194

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +LFSATM   +  ++ + +  P  I     NTPS+ + T +  F    +    K  +  
Sbjct: 195 AMLFSATMPGPILTLARSLMNRPVHIRAEAANTPSTHSTTRQVVF---RSHRMDKLEVTA 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++LQ++   +  I+F   K+    +   L ++GF V ++HG++ Q +R + L  F+ G +
Sbjct: 252 RILQARGRGRT-IVFTRMKRTAAEVARDLAERGFDVGSVHGDLGQGAREQALEAFRSGEV 310

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+D+ DV HV NF  P+    Y+HRIGRTGRAG+ G A TLV  ++ + 
Sbjct: 311 SILVATDVAARGIDVDDVTHVINFQTPDDPMTYVHRIGRTGRAGQTGIAVTLVGFDEGQK 370

Query: 357 IDAI 360
             AI
Sbjct: 371 WTAI 374


>gi|110737546|dbj|BAF00715.1| DRH1 DEAD box protein - like [Arabidopsis thaliana]
          Length = 450

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 135/337 (40%), Positives = 206/337 (61%), Gaps = 14/337 (4%)

Query: 36  LQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-PRTLILEPTRELAAQVADNFEK 94
           +Q  D+  IA+TG+GKT  +++P    L++     RM P  L+L PTRELA Q+     K
Sbjct: 1   MQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALK 60

Query: 95  YGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDE 154
           +GK+  ++ A L GG P   Q K++ERG D+++ TPGR+ D     ++ ++ +  LV+DE
Sbjct: 61  FGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDE 120

Query: 155 ADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRI------EVN 208
           ADRMLDMGF P I+ I + VP  RQTL+++AT   E++K++ + L NP ++      E+ 
Sbjct: 121 ADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELV 180

Query: 209 TPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
              S  +TIE   +A   ++S+    L+Q+L+SQ+     IIFC+ K+    L  +L + 
Sbjct: 181 ANKSITQTIE--VLAPMEKHSR----LEQILRSQEPGSKIIIFCSTKRMCDQLARNLTRT 234

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
            F   AIHG+  Q  R  +L+ F+ G   ++VA+D+AARGLD+ D+  V N+D PN  E+
Sbjct: 235 -FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVED 293

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           Y+HRIGRTGRAG  G A+T    +D KH   + K++E
Sbjct: 294 YVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILE 330


>gi|15221998|ref|NP_175911.1| DEAD box RNA helicase, putative (RH20) [Arabidopsis thaliana]
 gi|75333448|sp|Q9C718|RH20_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 20
 gi|12321578|gb|AAG50841.1|AC073944_8 ethylene-responsive RNA helicase, putative [Arabidopsis thaliana]
 gi|17065338|gb|AAL32823.1| Unknown protein [Arabidopsis thaliana]
 gi|22136216|gb|AAM91186.1| unknown protein [Arabidopsis thaliana]
 gi|332195071|gb|AEE33192.1| DEAD-box ATP-dependent RNA helicase 20 [Arabidopsis thaliana]
          Length = 501

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 133/386 (34%), Positives = 214/386 (55%), Gaps = 17/386 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+G    V+  V  AG+ +PTPIQ +  P+ ++  D+ GIA+TG+GKT S++LP +  
Sbjct: 101 FRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVH 160

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+G +  +    + GG+P   Q 
Sbjct: 161 VNAQPMLAHGDG----PIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQV 216

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L++G +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 217 RDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRP 276

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCA 233
            RQTL +SAT   E++++S+ FL NP ++ + +    A       V   ++   Y+K   
Sbjct: 277 DRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVK 336

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL+ ++     +    +F + KK    +   L   G+   +IHG+  Q  R  +LS F+ 
Sbjct: 337 LLEDIMDGSRIL----VFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRS 392

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +M A+D+AARGLD+ DV +V N+D P   E+Y+HRIGRTGRAG  G A+T     +
Sbjct: 393 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVAN 452

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
            +    +  ++++    ++ +L+S+ 
Sbjct: 453 ARFAKELTNILQEAGQKVSPELASMG 478


>gi|294626526|ref|ZP_06705125.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599216|gb|EFF43354.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 570

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 139/373 (37%), Positives = 224/373 (60%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L P ++  +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++  
Sbjct: 11  FSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNR 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q + 
Sbjct: 71  LLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL 130

Query: 119 LERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           L++G DV+I TPGR++D+  + K++ ++  EI V+DEADRM D+GFI  I+ +   +P  
Sbjct: 131 LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER 190

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            TRQTLLFSAT++  + +++   +  P+++ V T S TA  +       +    +K  LL
Sbjct: 191 GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIY--FPSDEEKQTLL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL   +  +  ++F N K  V  +  +LE+ G+ V  + G++ Q+ R  +L+ F++G 
Sbjct: 249 LGLLSRSEGART-MVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367

Query: 356 HIDAIEKLIEKKV 368
            +  IE  IE+K+
Sbjct: 368 SLPDIEAYIEQKI 380


>gi|313228985|emb|CBY18137.1| unnamed protein product [Oikopleura dioica]
          Length = 451

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 135/390 (34%), Positives = 231/390 (59%), Gaps = 9/390 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +  LG+  +V    +D  + KPTPIQ K+IP+ ++  DV G+A+TG+GKTA+F +P+L  
Sbjct: 26  WQSLGVCDEVAQTCVDLKWSKPTPIQQKSIPIAIEGKDVIGLAETGSGKTAAFAIPVLQT 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K     R+   L++ PTRELA Q+ + F+  G +  L+ A ++GGI   +Q   L + 
Sbjct: 86  LLKTPGGGRLS-CLVMTPTRELAFQIREQFQALGSSIGLSCACIVGGIEMMSQQLALAKK 144

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             V++ TPGR++DH  + +   +  ++ L++DEADR+L++ F   +  I   +P  RQT+
Sbjct: 145 PHVIVATPGRLVDHLEKTRGFNLKALKFLIMDEADRILNLDFEAEVDKILRAIPRERQTM 204

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE--TIEHCFVATYAQYSKKCALLQQLL 239
           LFSATMT +++K+    L+NP +I +N+   T +    ++ F+    +  K+C L+  L 
Sbjct: 205 LFSATMTAKVKKLQRAALKNPVKISINSKYKTVDKNIQKYMFIP---EAHKECYLVSLLN 261

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q +  + +IF +       +   +++ G+    +HG + Q+ R+  L+ FK  +  ++
Sbjct: 262 ELQGS--SFMIFTSTCAKTSLIARLVKRLGYDSVPLHGQMSQQKRLGALARFKGKSRSIL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+P V  V N+DVP   ++YIHR+GRT RAGR GK+ T V++ D++    
Sbjct: 320 VCTDVASRGLDVPHVDCVINYDVPTNTKDYIHRVGRTARAGRAGKSVTFVSQYDVELYQK 379

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
           IE  I KK+D    +   +    E++D A+
Sbjct: 380 IEAHIGKKLDQWPCEKDEVMALKERVDEAK 409


>gi|167382648|ref|XP_001736203.1| ATP-dependent RNA helicase DBP2 [Entamoeba dispar SAW760]
 gi|165901364|gb|EDR27447.1| ATP-dependent RNA helicase DBP2, putative [Entamoeba dispar SAW760]
          Length = 535

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 133/360 (36%), Positives = 213/360 (59%), Gaps = 7/360 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F +      ++  + +  Y+KPTPIQ    P+VLQ  DV GIA+TG+GKT SF++P +
Sbjct: 153 LTFEECNFPQSILDVIKEQNYIKPTPIQAIGWPIVLQGKDVVGIAETGSGKTISFLIPAI 212

Query: 60  LTILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + IL+   A+ R  PR LIL PTREL  Q+AD   K+ K  ++      GG+P   Q K 
Sbjct: 213 IHILDTPLAQYREGPRVLILAPTRELVCQIADEAIKFTKGTSIKTVRCFGGVPQSCQMKD 272

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            + G D+ + TPGR++D   RG   ++    L++DEADRML+MGF   +Q+I   +   R
Sbjct: 273 FQSGCDICVATPGRLIDFIKRGVTNLSRCTFLILDEADRMLEMGFEVQVQDIIGQIRPDR 332

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQ 237
           QT++++AT    +Q+ +  F+ +P +I +  P   A E+++   +    Q   + + + +
Sbjct: 333 QTVMWTATWPQAIQQFALGFMFHPLQINIGNPDLHANESVKQ--IVEVCQERDRDSKMNE 390

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++   + K  +IF   K++  NLC+ L  Q + V  +HG+  Q  R + LS+FK G + 
Sbjct: 391 IVKRIGSEKKVLIFVKTKRSADNLCYKLRDQRYRVACMHGDKAQAERDRALSDFKSGAVN 450

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR--HGKAFTLVAKEDIK 355
            ++A+DLA+RGLDI ++  V N+++P+  ENYIHRIGRTGR GR   G+A +L    D +
Sbjct: 451 YLIATDLASRGLDIRNIEIVINYEMPSDIENYIHRIGRTGRMGRSVEGEAISLFTYADAR 510


>gi|71901632|ref|ZP_00683711.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|71728608|gb|EAO30760.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
          Length = 544

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 137/375 (36%), Positives = 223/375 (59%), Gaps = 10/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F+   L P ++  +  A +   TPIQ  T+P+ L   D+ G AQTGTGKT +F++ ++
Sbjct: 10  LNFSSFDLHPALLTGLTRAAFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVV 69

Query: 61  TILEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L      V      PR LIL PTRELA Q+ ++  K+G N  L  AL+ GG+ ++ Q 
Sbjct: 70  NRLLSSPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQR 129

Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L +GADV+I TPGR++D+  + +++ +   EI V+DEADRM D+GFI  I+ I   +P
Sbjct: 130 EMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLP 189

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
              +RQTLLFSAT++  + +++  ++  P+++   T S T   +       +    +K  
Sbjct: 190 ERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIY--FPAEEEKIP 247

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  LL   + M+  ++F N K  V  +  +L++ G+ V  + G++ QR R  +L+ F++
Sbjct: 248 LLLGLLSRSEGMRT-MVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQK 306

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +  
Sbjct: 307 GQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERY 366

Query: 354 IKHIDAIEKLIEKKV 368
              +  IE  IE+K+
Sbjct: 367 AMSLPDIEAYIEQKI 381


>gi|212710200|ref|ZP_03318328.1| hypothetical protein PROVALCAL_01259 [Providencia alcalifaciens DSM
           30120]
 gi|212687199|gb|EEB46727.1| hypothetical protein PROVALCAL_01259 [Providencia alcalifaciens DSM
           30120]
          Length = 428

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 153/414 (36%), Positives = 237/414 (57%), Gaps = 16/414 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKV+ A+   G+   TPIQ  T+P  ++  DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVIEALNKKGFNFCTPIQASTLPYTVEGKDVAGQAQTGTGKTLAFLTSTFHF 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +   PR LI+ PTRELA Q+  + ++  +   L + L  GG  ++ Q + 
Sbjct: 71  LLTHPAIEGKKTNQPRALIMAPTRELAVQIYSDAKELAEYTGLKMGLAYGGDGYDEQLRV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
           L+ G D+LI T GR++D+  +G + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LQDGVDILIGTTGRLIDYAKQGHVDLAAIQVIVLDEADRMYDLGFIKDIRWLFRRMPSAT 190

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
            R  LLFSAT++  +++++   + +P+ IEV     T   I E  F   Y    +K  LL
Sbjct: 191 DRLNLLFSATLSYRVRELAFEQMNSPEYIEVEPLQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q LL+ ++  +  IIF N K    ++   L   G  V  + G++ Q+ R++IL  F +G 
Sbjct: 248 QTLLE-EEWPERCIIFANTKHRCDDIWAHLAADGHRVGLLTGDVAQKKRLRILEQFTQGQ 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 IDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGNSISLACEEYAL 366

Query: 356 HIDAIEKLIEKK--VDWLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           ++ AIE+ I+    V   N D  LS L  P ++    + +  R+N+  P++  G
Sbjct: 367 NLPAIEEYIQHSIPVSKYNSDALLSDLPAP-KRRHRPRPSGPRRNSNAPRRHNG 419


>gi|158257264|dbj|BAF84605.1| unnamed protein product [Homo sapiens]
          Length = 483

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 156/416 (37%), Positives = 232/416 (55%), Gaps = 17/416 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     L+L PTRELA Q+A+ F   GK   L   +++ G+   AQ  +L R 
Sbjct: 64  LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVDGMDMVAQALELSRK 120

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178
             V+I TPGR+ DH        +  I  LV+DEADR+L+ G   F   ++ I + VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+TD L+++       P   E   P ST E ++  ++    +   K A L  L
Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKV--KDAYLVHL 238

Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q  QD  ++   IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK   
Sbjct: 239 IQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSI 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI 
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            + AIE+ I+KK++  + + + +   L ++++      R+   I  ++  FD +K+
Sbjct: 359 LVHAIEEQIKKKLEEFSVEEAEVLQILTQVNV-----VRRECEIKLEAAHFDEKKE 409


>gi|327399574|ref|YP_004340443.1| DEAD/DEAH box helicase domain-containing protein [Hippea maritima
           DSM 10411]
 gi|327182203|gb|AEA34384.1| DEAD/DEAH box helicase domain protein [Hippea maritima DSM 10411]
          Length = 526

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 135/370 (36%), Positives = 219/370 (59%), Gaps = 14/370 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F  LGLS  ++  +   G+ KPTPIQ K IPL+LQ   D+   A TGTGKT +F LP++
Sbjct: 6   NFKGLGLSEGILKTLQKQGFEKPTPIQEKVIPLILQSSKDLVAEAPTGTGKTLAFGLPLI 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L++    V+    +IL PTRELA QV D    +     L    + GG   E Q ++L+
Sbjct: 66  DLLKEKTGYVQ---AVILAPTRELAIQVCDEINAFKGKKRLKAFPIYGGQSIELQKRRLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+++ T GRI+DH NR  L ++ I+  ++DEAD ML+MGFI  I+ I +    T+  
Sbjct: 123 EGVDIVVGTAGRIIDHINRKTLNLSKIDYFILDEADEMLNMGFIDDIKEILTHTNPTKNM 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSATM +E++++++ +++ P+ + +         I +  V    ++   C +      
Sbjct: 183 FMFSATMPEEIKRLAKQYMKKPEFVRIEKSKMLTSQI-YFEVKEQDKFEALCRI------ 235

Query: 241 SQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +D +++  G+IFC  K +  N+ + L  +G+   AIHG++ Q  R +IL  F++  I +
Sbjct: 236 -RDAVEDFYGLIFCKTKVDAQNVANKLIDRGYYADAIHGDLSQDKRERILKRFRDKKINM 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV N+ +P  AE+YIHRIGRTGRA + G A T V+  + + + 
Sbjct: 295 LVATDVAARGIDIDGLTHVINYSMPQDAESYIHRIGRTGRAQKKGIAITFVSPSEYRKLR 354

Query: 359 AIEKLIEKKV 368
            I+KL + ++
Sbjct: 355 LIQKLAKAEI 364


>gi|302798402|ref|XP_002980961.1| hypothetical protein SELMODRAFT_51367 [Selaginella moellendorffii]
 gi|300151500|gb|EFJ18146.1| hypothetical protein SELMODRAFT_51367 [Selaginella moellendorffii]
          Length = 653

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 144/393 (36%), Positives = 221/393 (56%), Gaps = 15/393 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +LGL   ++ A+   GY  PTPIQ + +P+VL   D+ GIA+TG+GKTA+FVLPM+  
Sbjct: 185 FKELGLDSLLMGAITKQGYENPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVH 244

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++    +   P  +I  PTRELA Q+ +   K+ K Y + V+ + GG+    Q K+L+
Sbjct: 245 IMDQEELGKGEGPIGVICAPTRELAQQIFNESRKFAKPYGIRVSGVFGGMSKLDQFKELK 304

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G ++++ TPGR++D      L M     LV+DEADRM D+GF P I++I   +   RQT
Sbjct: 305 AGCEIVVATPGRLIDMLKMKALTMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 364

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ ++   L  P R+         E +            K   +L +L Q
Sbjct: 365 LLFSATMPRRVETLAREVLSAPVRVTAGEVGRANEDVTQVAQIVATDADKLQWMLSKLPQ 424

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D   + ++F + K  V  L   L+  GF V A+HG+ DQ SR+ +L  FK G   ++V
Sbjct: 425 MVDA-GDVLVFASTKVRVEELEKHLQDSGFKVAALHGDKDQASRVDVLQGFKSGQFHVLV 483

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIKHIDA 359
           A+D+AARGLDI  +  V N+D     + ++HR+GRTGRAG + G A+TLV +++ +    
Sbjct: 484 ATDVAARGLDIKSIKTVVNYDTAKDMDTHVHRVGRTGRAGDKEGVAYTLVTQKEARFAG- 542

Query: 360 IEKLIEKKVDWLNGDLSS-LNPPLEKIDIAQHN 391
                    D +NG +++  N P E +D+A  +
Sbjct: 543 ---------DLVNGFVAAGQNVPSELMDLAMKD 566


>gi|254456111|ref|ZP_05069540.1| ATP-dependent RNA helicase RhlE [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083113|gb|EDZ60539.1| ATP-dependent RNA helicase RhlE [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 536

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 148/419 (35%), Positives = 231/419 (55%), Gaps = 20/419 (4%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--ILEKGRARVRMPRTLIL 78
           + KPTPIQ   IP  L+  D+ G AQTGTGKT +F +P++   IL+K          L++
Sbjct: 22  FTKPTPIQGMAIPAALEGKDILGTAQTGTGKTLAFSIPLINKLILDKNAF------ALVM 75

Query: 79  EPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
            PTRELA QV +  +       N+  ALLIGG   + Q ++L   + +++ TPGRI DH 
Sbjct: 76  CPTRELATQVMEAIKSIISDKINIKTALLIGGESMQKQLRQLGNRSRIIVGTPGRINDHL 135

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
            R  L ++  + LV+DE DRMLDMGF P I+ +   VP   QTLLFSAT+   + ++SE 
Sbjct: 136 KRKSLNLSATKYLVLDETDRMLDMGFTPQIEMVLKFVPKDHQTLLFSATLPQNILRISER 195

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
           +L  P+RI     S     I+   +  + + +K   L+ Q L  + ++   ++F   K++
Sbjct: 196 YLHKPERISTGATSVPIAKIKQETLQVFKE-NKYDELIDQFLARKGSI---LVFVKTKRS 251

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
              +   L+++G S   IHG++ Q  R +++++F++G  ++++A+D+AARGLDIP + HV
Sbjct: 252 ADKMVKRLKEEGHSADGIHGDLRQSKRDRVINSFRKGLKRILIATDVAARGLDIPLIQHV 311

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDL-- 375
            N+D+P   E+Y+HRIGRT RAG  G A T +  +D    ++I KLI+     +   L  
Sbjct: 312 INYDLPQVPEDYVHRIGRTARAGSEGSALTFLTPDDRSMWNSINKLIDPNFKAVPSGLRR 371

Query: 376 SSLNP-----PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKIS 429
            S N      P  K   A+            +S+ F  + K+Y   +S  P ++ EK S
Sbjct: 372 DSKNKRRGKGPNNKKRKAREEKRSFGKGRQDRSSSFRNKPKSYDKSRSGKPPRDGEKKS 430


>gi|326575788|gb|EGE25711.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis CO72]
          Length = 391

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 148/381 (38%), Positives = 231/381 (60%), Gaps = 25/381 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DL LS  ++ AV    + + TPIQ + +P  L   D  G AQTGTGKTA+F   ++T
Sbjct: 8   NFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATF---LIT 64

Query: 62  ILEKGRAR------VRM---PRTLILEPTRELAAQV-AD--NFEKYGKNYNLTVALLIGG 109
           I+E    R      +R    PR L+L PTRELA Q+ AD     ++ + YNL +    GG
Sbjct: 65  IIESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCRELTRFSQLYNLCIT---GG 121

Query: 110 IPFEAQNKKL-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
             F+ Q ++L +R  D+LI TPGRI+D  ++G+L ++ +E+ V+DEADRMLDMGFIP I+
Sbjct: 122 SDFDKQLEQLHKRPLDILIGTPGRIIDWVDKGELFLDRVEVFVLDEADRMLDMGFIPDIK 181

Query: 169 NITSLVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
            I   +P    RQ+LLFSAT   ++  ++  +L  P  +E+   S T + I+  F     
Sbjct: 182 RIVRHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTE 241

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           +  +K + L+Q+L + D++K  IIF N+K  V  L   L +    V  + G++ Q+ R +
Sbjct: 242 R--EKTSALKQIL-ADDSVKKTIIFANRKDQVKRLYDYLRRH-HKVTMLSGDVAQQKRER 297

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  FK+G + ++VA+D+A RG+ + DV HV N+ +P+  ++Y+HRIGRTGRAG  G + 
Sbjct: 298 YLQRFKDGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSI 357

Query: 347 TLVAKEDIKHIDAIEKLIEKK 367
           + V++ D  ++ A+E+ I++K
Sbjct: 358 SFVSENDAFNLPALERHIDQK 378


>gi|225569182|ref|ZP_03778207.1| hypothetical protein CLOHYLEM_05264 [Clostridium hylemonae DSM
           15053]
 gi|225161981|gb|EEG74600.1| hypothetical protein CLOHYLEM_05264 [Clostridium hylemonae DSM
           15053]
          Length = 526

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 137/367 (37%), Positives = 220/367 (59%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L P+++ AV   G+ + +PIQ K IPLV +  D+ G AQTGTGKTA+F +P+L  
Sbjct: 6   FEELELCPEIMKAVKKMGFEEASPIQAKAIPLVREGRDIIGQAQTGTGKTAAFGIPLL-- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
            EK   + +  + ++L PTRELA QVAD      +  + + V  + GG     Q + L+ 
Sbjct: 64  -EKIDPKNKKLQAVVLCPTRELAIQVADEIRTLAEYMHGIKVLPIYGGQEIVKQIRSLKS 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR++DH  R  + M ++  +V+DEAD ML+MGF   I+ I   VP  RQT+
Sbjct: 123 GVQLMIGTPGRVMDHMRRKTVKMEHVHTVVLDEADEMLNMGFREDIETILEGVPQERQTV 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +  +++ F ++ + ++V     T   IE  +     +   K  +L +LL  
Sbjct: 183 LFSATMPKPILDITKKFQKHAEIVKVTKKELTVPNIEQFYYEVKPK--NKEEVLSRLLDI 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  K  ++FCN KK V  L + L  +G+    +HG++ Q  R +++  F+ G   ++VA
Sbjct: 241 YNP-KLSVVFCNTKKQVDILVNGLLGRGYFAAGLHGDLKQAQRDRVMQGFRSGKTDILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ +V  VFN+D+P   E Y+HRIGRTGRAGR G++F+ V+ +++  +  I+
Sbjct: 300 TDVAARGIDVDEVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKLREIQ 359

Query: 362 KLIEKKV 368
           +  + K+
Sbjct: 360 RYCKTKI 366


>gi|170726099|ref|YP_001760125.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169811446|gb|ACA86030.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 432

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 140/371 (37%), Positives = 223/371 (60%), Gaps = 16/371 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL P+++  + +  Y+ PT IQ ++IP +L+  D+ G A TG+GKTA+F LP+L  
Sbjct: 15  FDELGLIPELLQRIAELEYLTPTQIQSQSIPHLLEGKDLLGGANTGSGKTAAFALPILQH 74

Query: 63  LEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNK 117
           L  G    A+  M R L+L PTRELA QVA +F+ Y +     L V  + GG+    Q  
Sbjct: 75  LHVGDKPVAKGNMVRALVLVPTRELAKQVAASFKSYAQGLTPKLKVEAVFGGVSVNTQML 134

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADVL+ TPGR+LD  +   + ++    LV+DEADRML +GF   ++ + +L+P  
Sbjct: 135 ALRGGADVLVATPGRLLDLLSSNAIKLSQASHLVLDEADRMLSLGFAEELEKVLALLPKR 194

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKCALLQ 236
           +QTLLFSAT  +E+++++++ L +P  +E++  S+   T ++  +       ++K ALL 
Sbjct: 195 KQTLLFSATFPEEVKELTDSLLNSP--VELHLESTEESTLVQQVYTVNK---NRKTALLA 249

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L+  ++  +  ++F + K     L   L K G S    H +  Q SR ++L  FK G I
Sbjct: 250 HLINERN-WRQVLVFASAKNTCNRLEQKLAKAGVSAQVFHSDKSQGSRTRVLDGFKSGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARG+DI  +  V N+++P    +Y+HRIGR+GRAG  G A +L++ ++ +H
Sbjct: 309 SVLIATDIAARGIDIEKLPVVINYELPRSPSDYMHRIGRSGRAGEAGLALSLISHDEYQH 368

Query: 357 IDAIEKLIEKK 367
                KLIEKK
Sbjct: 369 F----KLIEKK 375


>gi|332534743|ref|ZP_08410571.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035830|gb|EGI72314.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 408

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 136/370 (36%), Positives = 206/370 (55%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++  L  K++ A+   GY  PT IQ + IP  LQ  D+   A TGTGKTA+F++P +
Sbjct: 1   MQFSEFDLDNKLLDAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAI 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R      R L++ PTRELA Q+ +  E   K  +L + ++ GGI +    +  
Sbjct: 61  QYLLDFPRRDPGFARVLVMTPTRELAYQIHEQCELLAKRTHLKIGVVTGGINYGTHKEIF 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+  D+LI TPGR++++         ++E+L+IDEADRMLDMGF   +  I       RQ
Sbjct: 121 EKNNDILIATPGRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEAKNRRQ 180

Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             LFSAT+  D +++ +E  L +P  +E  +       I H +V     Y  K  LL   
Sbjct: 181 CFLFSATLEGDSVERFAEKTLNDPALLEAESSRKEKAKI-HQWVHLADDYHHKLELLVNT 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   D  K  I+F   ++ +  L   L   G     + G + Q  RMK + NF  G  ++
Sbjct: 240 LNGPDVTK-AIVFVKTRERLETLIGELTNNGVKAAWLRGEMPQDKRMKAMENFHSGKTRI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+ D+ HV NFD+P  A+ Y+HRIGRTGRAG+ G A +LV   DI  + 
Sbjct: 299 LIATDVAARGIDVSDISHVINFDMPRTADVYVHRIGRTGRAGKKGIAISLVEAHDIGILY 358

Query: 359 AIEKLIEKKV 368
            +E+ +E+K+
Sbjct: 359 KVERYVEQKL 368


>gi|257456960|ref|ZP_05622141.1| ATP-dependent RNA helicase DbpA [Treponema vincentii ATCC 35580]
 gi|257445669|gb|EEV20731.1| ATP-dependent RNA helicase DbpA [Treponema vincentii ATCC 35580]
          Length = 605

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 135/370 (36%), Positives = 223/370 (60%), Gaps = 6/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F++  L   ++  + +AGY++ TP+Q +     +   D+   +QTGTGKTA++++ ++
Sbjct: 12  MNFSNFNLDSHLLQGLEEAGYIECTPVQEQVFSAGMDGSDLYVQSQTGTGKTAAYLVTLM 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +       R P  LIL PTRELA QV +   K GK   L  A   GG+ ++ Q + L+
Sbjct: 72  QRMLAQGTESRRP-ALILVPTRELAVQVEEEAHKLGKYTGLRAASFYGGVGYQQQEEALK 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--R 178
            G D++I TPGR++D      + + ++  LVIDEADRM DMGF P ++++ S++     R
Sbjct: 131 NGVDLIIGTPGRVIDLEKSKTMKLKHVGFLVIDEADRMFDMGFYPDLRSLLSVLSKAEER 190

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT+   ++ ++  +  + K I ++  + T + I        A   +K +LL  +
Sbjct: 191 QTMLFSATLNTWVKNLAWEYTIDAKEITIDADNVTVDEINQKLFHVAA--DQKMSLLLGI 248

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+++   +N IIFCN KK    +   L   G++   + G++ Q  R+ I+ +FK G +  
Sbjct: 249 LRNEKP-ENTIIFCNTKKTTEIVAKRLRINGYATEFLIGDLPQPKRLHIIDSFKAGKLTC 307

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI D+  V N+D+PN AENY+HRIGRT RAG+ G A++L +++D+ ++ 
Sbjct: 308 LVATDVAARGIDINDLAMVINYDLPNEAENYVHRIGRTARAGKTGAAYSLCSEQDVYNLP 367

Query: 359 AIEKLIEKKV 368
            IEK IE K+
Sbjct: 368 DIEKYIEAKI 377


>gi|238919400|ref|YP_002932915.1| ATP-dependent RNA helicase DbpA [Edwardsiella ictaluri 93-146]
 gi|238868969|gb|ACR68680.1| ATP-independent RNA helicase DbpA [Edwardsiella ictaluri 93-146]
          Length = 457

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 138/352 (39%), Positives = 208/352 (59%), Gaps = 8/352 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY   TP+Q  T+P +L   DV   A+TG+GKTA+F L +L  ++  R    + ++L+L 
Sbjct: 22  GYQTMTPVQAATLPAILAGKDVRAQAKTGSGKTAAFGLGLLQHIDASRF---ITQSLVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N+ V  L GG+PF AQ   L     +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAAALRRLARYMPNIKVLTLCGGVPFGAQRDSLIHAPHIIVATPGRLLDHLK 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +  L +  ++ L++DEADRMLDMGF   +  + S  P  RQTLLFSAT   E+  +S   
Sbjct: 139 KETLSLEALQTLILDEADRMLDMGFADALDEVISWAPEKRQTLLFSATWPAEIAAISRRI 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            ++P  IE++T       +E  F       S K  LLQ LL SQ    + ++FCN KK+ 
Sbjct: 199 QRDPLTIEIDTDGEL-PAVEQRFYEV--SRSGKTGLLQALL-SQHQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +  +LE+ G SV  +HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QAVYDALEESGQSVLVLHGDMEQRDRDQTLVRFANGSSRVLVATDVAARGLDIKALAMVI 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           N+++    E ++HRIGRT RAG  G A +L A E+ +  +A+E+++  ++ W
Sbjct: 315 NYELSWDPEVHVHRIGRTARAGASGLAISLCAPEEAQRANALEEMLGVRLQW 366


>gi|170755466|ref|YP_001781330.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum B1 str.
           Okra]
 gi|169120678|gb|ACA44514.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B1 str.
           Okra]
          Length = 481

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 223/368 (60%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  LS +++ ++   GY  P+ +Q + IPL+L+  D+   ++TG+GKTA+F +P  
Sbjct: 4   LTFENYKLSDEILKSLGKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIP-- 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + EK     + P+ L+L PTRELA Q+ +          L    + G  P   Q ++L+
Sbjct: 62  -VCEKLELEEKDPQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRELK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR LDH  R  L +  I+  V+DEAD ML+MGFI  ++ +   +P  R T
Sbjct: 121 QRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRVT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ ++++ + + ++ NP+ I +N  + T +TI  C+     +   K +LLQ+++ 
Sbjct: 181 MLFSATIPEKIENLCKKYMNNPQNININPENITTDTINQCYYE--VEDKDKFSLLQKII- 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++ + N IIFCN ++ V  +  +++K+G +   +HG ++Q+ R++ +  FKEG  Q +V
Sbjct: 238 YKEVVDNSIIFCNTREKVDEVLKNMKKKGLNAVGLHGGMEQKDRLETMKKFKEGEFQFLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ I ++ HV N+++P   E+Y+HRIGRTGRAG+ G A T +    +  ++ I
Sbjct: 298 CTDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVIFLEDI 357

Query: 361 EKLIEKKV 368
           E  IEK++
Sbjct: 358 EDYIEKEI 365


>gi|21233204|ref|NP_639121.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66770146|ref|YP_244908.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188993353|ref|YP_001905363.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           campestris str. B100]
 gi|32363344|sp|Q8P4D4|RHLB_XANCP RecName: Full=ATP-dependent RNA helicase rhlB
 gi|81303902|sp|Q4UPY5|RHLB_XANC8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739237|sp|B0RWT6|RHLB_XANCB RecName: Full=ATP-dependent RNA helicase rhlB
 gi|21115552|gb|AAM43476.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66575478|gb|AAY50888.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167735113|emb|CAP53325.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris]
          Length = 573

 Score =  253 bits (645), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 139/375 (37%), Positives = 225/375 (60%), Gaps = 10/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L P +V  +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++
Sbjct: 9   LTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVM 68

Query: 61  TILEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L    A    +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q 
Sbjct: 69  NRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQR 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L++G DV+I TPGR++D+  + K++ ++  EI V+DEADRM D+GFI  I+ +   +P
Sbjct: 129 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
              TRQTLLFSAT++  + +++   +  P+++ V T + TA  +       +    +K  
Sbjct: 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIY--FPSDEEKQT 246

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  LL   +  +  ++F N K  V  +  +LE+ G+ V  + G++ Q+ R  +L+ F++
Sbjct: 247 LLLGLLSRSEGART-MVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK 305

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +  
Sbjct: 306 GQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERY 365

Query: 354 IKHIDAIEKLIEKKV 368
              +  IE  IE+K+
Sbjct: 366 AMSLPDIEAYIEQKI 380


>gi|325913813|ref|ZP_08176172.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
 gi|325539888|gb|EGD11525.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
          Length = 570

 Score =  253 bits (645), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 139/375 (37%), Positives = 225/375 (60%), Gaps = 10/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L P +V  +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++
Sbjct: 9   LTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVM 68

Query: 61  TILEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L    A    +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q 
Sbjct: 69  NRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQR 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L++G DV+I TPGR++D+  + K++ ++  EI V+DEADRM D+GFI  I+ +   +P
Sbjct: 129 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
              TRQTLLFSAT++  + +++   +  P+++ V T + TA  +       +    +K  
Sbjct: 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIY--FPSDEEKQT 246

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  LL   +  +  ++F N K  V  +  +LE+ G+ V  + G++ Q+ R  +L+ F++
Sbjct: 247 LLLGLLSRSEGART-MVFVNTKAFVERVARTLERNGYRVGVLSGDVPQKKRESLLNRFQK 305

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +  
Sbjct: 306 GQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERY 365

Query: 354 IKHIDAIEKLIEKKV 368
              +  IE  IE+K+
Sbjct: 366 AMSLPDIEAYIEQKI 380


>gi|34541680|ref|NP_906159.1| DEAD-box ATP dependent DNA helicase [Porphyromonas gingivalis W83]
 gi|34397998|gb|AAQ67058.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Porphyromonas
           gingivalis W83]
          Length = 427

 Score =  253 bits (645), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 135/379 (35%), Positives = 220/379 (58%), Gaps = 8/379 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L  +V+  +    +++ TP+Q  TIP +L+  DV   AQTGTGKTA+++LP+L
Sbjct: 1   MRFDELNLGDEVLDGLDAMNFIETTPVQAATIPPILEGRDVIACAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             L  G     +   +I+ PTRELA Q+    E +     ++   + GG   + +E Q +
Sbjct: 61  DRLSAGEFASDVVNAVIMAPTRELAQQIDQQVEGFSYFMPVSAVAIYGGTDGVAWEQQRR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +  GAD++I TPGR++ H N G   ++++   V+DEADRMLDMGF   I  I   +P +
Sbjct: 121 GMAMGADIVIATPGRLISHLNLGSADLSHVSYFVLDEADRMLDMGFFDDIMQIYKQLPSS 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            QT++FSATM  +++K++ + L++P  +E+         ++  ++   AQ   K  +L++
Sbjct: 181 CQTVMFSATMPPKIRKLAASILRDPIEVEIAISRPPESIMQSAYICHEAQ---KLPILRK 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L + Q   K  IIF + K  V  L  +L K GF+V  +H +++Q  R +++ +FK G + 
Sbjct: 238 LFE-QSAPKRTIIFASAKLKVRELTSTLRKMGFNVADMHSDLEQSQREQVMRDFKNGYVD 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKH 356
           ++VA+D+ ARG+DI ++  V N+D+P+  E+Y+HRIGRT R     G A T V++E+   
Sbjct: 297 VLVATDIVARGIDIDNIRVVINYDIPHDPEDYVHRIGRTARGTNGEGLAITFVSEEEQSD 356

Query: 357 IDAIEKLIEKKVDWLNGDL 375
              IE  + K V  L  DL
Sbjct: 357 FHKIETFLGKSVYKLPVDL 375


>gi|170583206|ref|XP_001896476.1| ATP-dependent RNA helicase T26G10.1 in chromosome III [Brugia
           malayi]
 gi|158596304|gb|EDP34674.1| ATP-dependent RNA helicase T26G10.1 in chromosome III, putative
           [Brugia malayi]
          Length = 462

 Score =  253 bits (645), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 141/415 (33%), Positives = 240/415 (57%), Gaps = 16/415 (3%)

Query: 1   MDFADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           + F  LG++  V+C   D   + KPT +QI  +P   ++ D+ G+A+TG+GKTA+F +P+
Sbjct: 24  ITFQKLGVT-DVLCEACDRLNWKKPTKVQIAALPHAFKKRDIIGLAETGSGKTAAFAIPI 82

Query: 60  LTILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           L      +A +  P+    L+L PTRELA Q+ + FE  G +  + +A+++GG+    Q+
Sbjct: 83  L------QALLETPQKLFALVLTPTRELAFQIGEQFEALGASIGILIAVIVGGVDTVTQS 136

Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             L +   V++ TPGR++DH    K   +  ++ LV+DEADR+L+M F   ++ I  ++P
Sbjct: 137 LALAKRPHVIVATPGRLVDHLENTKGFNLRALKYLVMDEADRILNMDFEVELEKILKVIP 196

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R+T L+SATMT ++ K+    L +P RIEV++   T + ++  ++  +  Y  K A L
Sbjct: 197 KERRTYLYSATMTKKVAKLERASLNDPVRIEVSSKYQTVDKLKQYYI--FIPYKYKEAYL 254

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +L ++   +  I+FC+   + +     L K GF    +HG + Q  R+  L+ FK   
Sbjct: 255 IYIL-NEMAGQTAIVFCSTCASALKTALMLRKLGFGAVPLHGQMSQAKRLGSLNKFKSKA 313

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++V +D+A+RGLDIP V  V N+DVP ++++Y+HR+GRT RAGR G A T V + D++
Sbjct: 314 STVLVCTDVASRGLDIPHVDIVLNYDVPTQSKDYVHRVGRTARAGRSGVAITFVTQYDVE 373

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
               IE+LI KK+       + +   +E+++ AQ    ++   + +K  G  RR+
Sbjct: 374 IYQKIERLIGKKLPLFETVENDVMLLVERVEEAQKLAKQEMKEMEEKK-GRKRRQ 427


>gi|157376468|ref|YP_001475068.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157318842|gb|ABV37940.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 429

 Score =  253 bits (645), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 140/368 (38%), Positives = 216/368 (58%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L+P ++ A+   GY + T +Q + IP+ L   D+   A+TGTGKTA+F LP++
Sbjct: 1   MKFDALELNPSILEAIDVCGYQQLTQVQSEVIPVALTGVDLMACAETGTGKTAAFALPLI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L      +   R LIL PTRELA QVA+N  +Y +   L    + GG     Q K L 
Sbjct: 61  QRLIFDEVNLGSLRGLILTPTRELAIQVAENISRYCQFTALKTLAVYGGANMNPQRKALN 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGR+ D   +  L +++++ LVIDEADRMLDMGF+  I+ + +LV     T
Sbjct: 121 AGVDILVATPGRLFDFIGQHGLDLSDVKTLVIDEADRMLDMGFVRDIERVKALVAAEHIT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSAT +D+++ +++  LQ+P+ I V    S +   +  ++       +K  LL +L+ 
Sbjct: 181 HFFSATYSDDVKALAQKMLQSPQWINVAQSRSASSVEQEIYL---VDKRRKAELLSELV- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  ++F + K++  +L + L+  G      HG+  Q +R + L  FK G ++++V
Sbjct: 237 GRNNWQQVLVFASSKESAEHLQNELKLDGVKSAVFHGDKTQGARNRALEEFKNGMLRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N ++P  AE+YIHRIGRTGRAG  G+A + V   D K ++ I
Sbjct: 297 ATDVAARGLDIQALPLVINLELPFDAEDYIHRIGRTGRAGLKGRAISFVCPSDEKMLEEI 356

Query: 361 EKLIEKKV 368
           E LIE K+
Sbjct: 357 ETLIELKL 364


>gi|91794299|ref|YP_563950.1| ATP-dependent RNA helicase DbpA [Shewanella denitrificans OS217]
 gi|91716301|gb|ABE56227.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 470

 Score =  253 bits (645), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 139/367 (37%), Positives = 223/367 (60%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L  +++  +   GY   T IQ +++P +L   DV G  +TG+GKTA+F L +L  
Sbjct: 16  FSSLSLKTELLENLKTMGYESMTQIQAQSLPPILAGDDVIGQGKTGSGKTAAFGLGLLNK 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L+  R R++   TL++ PTRELA QVA       +  +N+ V  L GG+P   Q   LE 
Sbjct: 76  LDVKRFRIQ---TLVMCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQVGSLEH 132

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +R +L ++N+ +LV+DEADRML+MGF  +I  I    P  RQTL
Sbjct: 133 GAHIIVGTPGRIIDHLDRNRLDLSNVNMLVLDEADRMLEMGFQDHIDAIIEQTPRERQTL 192

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D+++ +++  +  P  ++V + +  A +IE  F     + +K      +LL  
Sbjct: 193 LFSATFPDQIKSIADEIMYKPVMVKVES-THDAISIEQHFYQL--EDNKSRLEALRLLLL 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  ++ ++FCN K+    +   L + GFSV A+HG+++QR R ++L  F   + +++VA
Sbjct: 250 SEQPESAVVFCNTKRETQQVADELAEFGFSVLALHGDLEQRDRDQMLLQFANQSARILVA 309

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  VFNF +   AE ++HRIGRTGRAG  G A++ +  +D   +  IE
Sbjct: 310 TDVAARGLDIDALDAVFNFHLAYDAEVHLHRIGRTGRAGSTGAAYSFIGHDDGYKVAMIE 369

Query: 362 KLIEKKV 368
           +++  ++
Sbjct: 370 EMLNIEI 376


>gi|328949667|ref|YP_004367002.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
           DSM 14884]
 gi|328449991|gb|AEB10892.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
           DSM 14884]
          Length = 517

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 135/371 (36%), Positives = 215/371 (57%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L P+V  A+ + G+   TP+Q  T+P  L+  DV   A+TGTGKT +F LP+ 
Sbjct: 1   MQFNELSLKPEVQQALRERGFTTLTPVQAATLPHALEGRDVIAQARTGTGKTLAFALPIA 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE  RA+ R PR L+L PTRELA QVA   +    +  L V  + GG  +  Q + L 
Sbjct: 61  ERLEPARAKGRAPRALVLAPTRELALQVAGELDWAAPH--LEVLTVYGGTGYGQQAQALR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR LD+  RG L +  +E++V+DEAD ML MGF   ++ + +     RQT
Sbjct: 119 RGCDVVVATPGRALDYLRRGVLDLARVEVVVLDEADEMLSMGFEEDVEALLAAAVSARQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSATM    ++++E  L++P     N      E + +  +A  A  + + A+L  +L 
Sbjct: 179 LVFSATMPSWARRLAERHLKDP--FVANLVKD--EAVTYRELAIEAPTATRIAVLSDVLH 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +    +  I+F   K     L  +L  +  +  A+HG++ Q +R ++++ F++G ++++V
Sbjct: 235 AYGAGR-AIVFTRTKAETDALATALAGRRHAAEAVHGDLSQAARERVVARFRKGLVRVLV 293

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+P+V  V ++ +P R E Y HR GRTGRAGR G    L    + + +  +
Sbjct: 294 ATDVAARGLDVPEVELVVHYRLPERVEVYQHRSGRTGRAGRTGTVVLLYGPRERRTVADL 353

Query: 361 EKLIEKKVDWL 371
           E+ + ++ + L
Sbjct: 354 ERALRRRFERL 364


>gi|269218758|ref|ZP_06162612.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211869|gb|EEZ78209.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 531

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 146/414 (35%), Positives = 230/414 (55%), Gaps = 25/414 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FAD G+S  +V A+ D G   P PIQ  T+P+ L+ +D+ G A+TGTGKT  F +PML  
Sbjct: 38  FADFGVSTPIVDALKDKGITHPFPIQALTLPVALRGNDIIGQAKTGTGKTLGFGIPMLEN 97

Query: 62  ---ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
              I E+G   V +     P+ L++ PTRELA QVA+          L +  + GG  +E
Sbjct: 98  TAGIDEEGWESVPVQARGKPQGLVILPTRELAKQVAEELRAAAARRRLRIVEVYGGRAYE 157

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L+ GA++++ TPGR++D      L +  +  +V+DEAD MLD+GF+  ++ I + 
Sbjct: 158 PQQEALKEGAEIVVGTPGRLVDLMKHRFLDLTYVRTVVLDEADEMLDLGFLEDVEKILAS 217

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKC 232
            P  R T+LFSATM   +  ++  ++  P  I    PS T  T++      Y  ++  K 
Sbjct: 218 TPSNRHTMLFSATMPGPVVAMARRYMSRPTHIRAADPSDTGVTVKSVRQVVYRCHALNKS 277

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            +L ++LQ++      I+F   K+    L   L ++GF+  A+HG++ Q +R + L  F+
Sbjct: 278 EVLARILQAKGRGLT-IVFTRTKRTAARLAEELTERGFAAGALHGDLGQGAREQALRAFR 336

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G + ++VA+D+AARG+D+ DV HV N+  P   + YIHRIGRTGRAG+ G A T V  +
Sbjct: 337 NGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKTYIHRIGRTGRAGQSGTAVTFVDWD 396

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNP-PLEKIDIAQHNHARKNNPIPQKSTG 405
           D+     I+K +  +            P PLE    ++H ++  +  IP+ +TG
Sbjct: 397 DLPRWTLIDKALNLR-----------QPEPLETYHTSEHLYSDLD--IPEGATG 437


>gi|156362250|ref|XP_001625693.1| predicted protein [Nematostella vectensis]
 gi|156212537|gb|EDO33593.1| predicted protein [Nematostella vectensis]
          Length = 446

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 137/367 (37%), Positives = 213/367 (58%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+   +  A    G+  P+ IQ + IP+ LQ  DV G+A+TG+GKT +F LP+L  
Sbjct: 16  FKSLGVVDALCEACKQLGWKTPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILQA 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     R+     LIL PTRELA Q+++  E  G    +  A+++GGI   +Q   L + 
Sbjct: 76  LLDNPQRLF---ALILTPTRELAFQISEQCEALGSGIGVKCAVIVGGIDMMSQALMLAKK 132

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  +  ++P  R+T 
Sbjct: 133 PHIIIATPGRLIDHLENTKGFSLRTLKYLVMDEADRILNMDFEKEVDKLLKVIPKERRTF 192

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT ++QK+    LQ P ++EV T   T E ++  ++   +++ K C L+  L  +
Sbjct: 193 LFSATMTKKVQKLQRASLQAPVKVEVATKYQTVEKLQQSYLFIPSKF-KDCYLVYVL--N 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + ++FC    NV  +   L   G     +HG + Q  R+  L+ FK  +  ++VA
Sbjct: 250 ELAGNSFMVFCGTCNNVQRVTLMLRNLGLDAVPLHGQMSQSKRLGALNKFKSKSRSILVA 309

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR G++ T V + D++    IE
Sbjct: 310 TDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGRSVTFVTQYDVELYQRIE 369

Query: 362 KLIEKKV 368
            LI KK+
Sbjct: 370 HLIAKKL 376


>gi|146184027|ref|XP_001027635.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|146143373|gb|EAS07393.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 713

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 150/396 (37%), Positives = 228/396 (57%), Gaps = 26/396 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + D      ++  V  A + KP+PIQ    P+VL  HD+ GIA+TG+GKT SF+LP +
Sbjct: 101 LSWTDTHFPQYIMNEVTHAKFEKPSPIQSLAFPVVLSGHDLIGIAETGSGKTLSFLLPSI 160

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   ++KG      P  L+L PTRELA Q+    E++GK+  L  A + GG    +
Sbjct: 161 VHINAQPTVKKGDG----PIVLVLAPTRELAMQIERESERFGKSSKLKCACIYGGADKYS 216

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L++G DV+I TPGR++D        +  +  LV+DEADRMLDMGF   I+ I   +
Sbjct: 217 QRALLQQGVDVVIATPGRLIDFLESETTTLRRVTYLVLDEADRMLDMGFEIQIRKILGQI 276

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQN-PKRIEVNTPS-STAETIEHCFVATYAQYSKKC 232
              RQTL+FSAT    +Q +++++ +N P  +++     +  E I+     T  Q  K  
Sbjct: 277 RPDRQTLMFSATWPKNVQNLAQDYCKNTPVYVQIGKHELAINERIKQIVYVT-DQSKKIN 335

Query: 233 ALLQQL--LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            L++QL  L  +D +   +IF   KK   ++   L K+GF   AIHG+  Q+ R  +++ 
Sbjct: 336 QLIKQLDCLTQKDKV---LIFAQTKKGCESMSRILNKEGFKCLAIHGDKAQKDRDYVMNK 392

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G  ++++A+D+A+RGLD+ DV HVFN+D P   E+Y+HRIGRTGRAG +G A + + 
Sbjct: 393 FKSGECRILIATDVASRGLDVKDVSHVFNYDFPKVMEDYVHRIGRTGRAGAYGCAVSFLT 452

Query: 351 KEDIKHI--DAIEKLIEKK----VDWLNGDLSSLNP 380
            ED K I  + ++ L + K    +D L  DL+S+NP
Sbjct: 453 FEDDKKISREYVQMLHDAKQEIPIDLL--DLASINP 486


>gi|313202537|ref|YP_004041194.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312441853|gb|ADQ78209.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 408

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 214/374 (57%), Gaps = 13/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   V+  +    + + TP+Q +TIP++LQ+ DV   AQTGTGKTA+F+LP+L
Sbjct: 1   MRFDELPLCDAVLDGLQAMNFKEATPVQAETIPVILQKRDVIACAQTGTGKTAAFILPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             L+           +I+ PTRELA Q+    E +    + +   + GG     ++ Q +
Sbjct: 61  HNLQAEPLAADKVNAIIMAPTRELAQQIDQQMEGFSYFTSFSSVAVYGGNDASAWDTQRR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ GADV+I TPGR+L H N   +  ++++  ++DEADRMLDMGF   I  + + +P  
Sbjct: 121 GLQNGADVVIATPGRLLSHINLYDIDFSHVKYFILDEADRMLDMGFFDDIMQVVNRLPKD 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNT---PSSTAETIEHCFVATYAQYSKKCAL 234
           RQT++FSATM  +++ +++  L NP  +++     P S  +T   C+ A      +K  +
Sbjct: 181 RQTIMFSATMPPKIRLLAKTILNNPVEVKIAVSRPPESIMQTAYICYEA------QKHGI 234

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           ++ L   Q+  K  IIF   K  V  L  +  + G SV  +H ++DQ  R  ++  FK  
Sbjct: 235 IRHLFAEQEATKV-IIFSGSKLKVKELFKTFRQMGLSVGEMHSDLDQAQRDHVMHEFKNN 293

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+ +RG+DI D+  V N+DVP+ AE+Y+HRIGRT RA   G + T V++E+ 
Sbjct: 294 RVSILVATDIVSRGIDIDDISLVINYDVPHDAEDYVHRIGRTARASAKGMSITFVSEEEQ 353

Query: 355 KHIDAIEKLIEKKV 368
                IE  +EK +
Sbjct: 354 YKFKQIEDFLEKDI 367


>gi|307181904|gb|EFN69344.1| ATP-dependent RNA helicase vasa [Camponotus floridanus]
          Length = 355

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 139/356 (39%), Positives = 208/356 (58%), Gaps = 14/356 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F   GL   ++  +  +GY KPTP+Q   IP+++   D+   AQTG+GKTA+FV+P+L T
Sbjct: 1   FNQTGLRTILLDNIKKSGYTKPTPVQKYAIPIIMSGRDLMACAQTGSGKTAAFVVPILHT 60

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +LE  R  +       P+ LI+ PTREL  Q+    +K+  N  +   +  GG       
Sbjct: 61  LLENPRDLITTSTSCEPQVLIVSPTRELTQQIYQQAKKFSLNSIIRCEVAYGGTSVSHNR 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---SL 173
           +K+  G  VL+ TPGR+LD   RG++ ++++   V+DEADRMLDMGF+P I+ I    ++
Sbjct: 121 EKIFAGCHVLVATPGRLLDFIGRGRIKLSSLRFFVLDEADRMLDMGFLPDIEKIVDHETM 180

Query: 174 VPFT-RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           VP   RQTL+FSAT   E+Q+++  FL+N   + V         ++  F     Q  K+ 
Sbjct: 181 VPAEERQTLMFSATFPSEIQELAGRFLKNYLFLAVGIVGGACADVQQNFYQASGQPEKR- 239

Query: 233 ALLQQLLQSQDTM---KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            LL++LL  Q  M   +  ++F  QK++   +   L +  F   +IHG+  QR R + LS
Sbjct: 240 KLLKELLDKQSQMGSIEGTLVFVEQKRHTDFIAAFLSESNFPTTSIHGDRLQREREEALS 299

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           +FK G + ++VA+ +AARGLDI +V HV NFD+P   + Y+HRIGRTGR G  GKA
Sbjct: 300 DFKRGKMSILVATAVAARGLDIKNVAHVINFDLPKTIDEYVHRIGRTGRVGNRGKA 355


>gi|160888241|ref|ZP_02069244.1| hypothetical protein BACUNI_00650 [Bacteroides uniformis ATCC 8492]
 gi|156862187|gb|EDO55618.1| hypothetical protein BACUNI_00650 [Bacteroides uniformis ATCC 8492]
          Length = 428

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 130/371 (35%), Positives = 224/371 (60%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ ++IP++L+  D+  +AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELHLNGNVLEALDAMRFEECTPIQEQSIPVILEGRDLIAVAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             L +G         +++ PTRELA Q+    E +     ++   + GG   + FE Q +
Sbjct: 61  NKLSEGGHPADAINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++ N L NP  +++       + ++  +V    Q   K  +++ 
Sbjct: 181 RQTIMFSATMPAKIQQLAGNILNNPAEVKLAVSKPAEKIVQAAYVCYENQ---KLGIIRS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L  +++T +  IIF + K  V  +  +L++   +V  +H +++Q  R +++  FK G I 
Sbjct: 238 LF-AEETPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V++++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVAITFVSEKEQGNF 356

Query: 358 DAIEKLIEKKV 368
             IEK +++ +
Sbjct: 357 KNIEKFLDRDI 367


>gi|148978452|ref|ZP_01814926.1| ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3]
 gi|145962359|gb|EDK27639.1| ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3]
          Length = 436

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 148/384 (38%), Positives = 221/384 (57%), Gaps = 13/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P+V+  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 11  FADLDLLPQVIEGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L K     GR +   PR +I+ PTRELA Q+ ++ E    +  +  AL  GG  ++ Q  
Sbjct: 71  LLKTPEHEGR-KPNQPRAIIMAPTRELAIQIYNDAESLVASTGIKAALAYGGESYDKQLG 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           K+E GAD+LI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KIEEGADILIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234
             R  +LFSAT++  +Q+++   + NP+ + V     T   I E  F   Y     K AL
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMHNPEHVVVEPERKTGHRIKEELF---YPSNEHKMAL 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ L++ ++  +  IIF N K     +   L   G  V  + G++ Q+ R KIL  F +G
Sbjct: 247 LQTLVE-EEWPERAIIFANTKHKCELVWGHLAADGHRVGLLTGDVPQKKREKILEQFTQG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + L+VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   ++  
Sbjct: 306 DVDLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYA 365

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL 378
            ++  IE+ IE  +   + D S+L
Sbjct: 366 INLPPIEEYIEHAIPVSDYDASAL 389


>gi|308497817|ref|XP_003111095.1| hypothetical protein CRE_03900 [Caenorhabditis remanei]
 gi|308240643|gb|EFO84595.1| hypothetical protein CRE_03900 [Caenorhabditis remanei]
          Length = 749

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 155/436 (35%), Positives = 233/436 (53%), Gaps = 32/436 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  + LS +++ A   AGY  PTPIQ   IP+ L   D+C  A TGTGKTA+FVLP+L
Sbjct: 155 VSFEQMNLSRQILKACAGAGYTDPTPIQQACIPVALSGKDICACAATGTGKTAAFVLPIL 214

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          R L+L PTRELA QV   F K      L V L  GG+  +AQ   L 
Sbjct: 215 ERMIYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALR 274

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            G DV++ TPGR++DH  N     + +IE+LV+DEADRML+  F   +  +  L    RQ
Sbjct: 275 SGPDVVVATPGRLIDHLHNSPNFNLGSIEVLVLDEADRMLEEAFRDQMNELIRLCAENRQ 334

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCAL 234
           TLLFSATMT+E+ +++   LQ P +I +N  + TA  +   F+   A     + S   AL
Sbjct: 335 TLLFSATMTEEIDELASMSLQRPVKIFINENTDTALKLRQEFIRIRAGRETDRESMVAAL 394

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + +  Q+     N I+F   KK+   +   L   G  V  +  ++ Q  R++ LS FK+G
Sbjct: 395 VTRTFQT-----NTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKG 449

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I ++V++DLA+RGLDI  V  V N ++P   + YIHR+GRT RAG+ G++ +LV +E+ 
Sbjct: 450 EIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEEER 509

Query: 355 KHIDAI----------EKLIEKK-VDWLNGDLSSLNPPLEKID----------IAQHNHA 393
           K +  I          ++L+  + V+     +  L   +++ID          IA+ + A
Sbjct: 510 KLLKEIVNSNADRTLKQRLVAPEVVEAYRSRIDDLEETIQQIDEEDRAEKELRIAESSMA 569

Query: 394 RKNNPIPQKSTGFDRR 409
           +  + +     G +RR
Sbjct: 570 KTQHALETGEAGNERR 585


>gi|119496543|ref|XP_001265045.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL
           181]
 gi|143462290|sp|A1D405|RRP3_NEOFI RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|119413207|gb|EAW23148.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL
           181]
          Length = 472

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 138/369 (37%), Positives = 217/369 (58%), Gaps = 10/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DLG+  ++  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 54  FKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQA 113

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++EK ++       LIL PTRELA Q++ +FE  G   N+  A+++GG+   +Q+  L +
Sbjct: 114 LMEKPQSFF----GLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGK 169

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+LDH    K   +  ++ LV+DEADR+LDM F P +  I  ++P  R+T
Sbjct: 170 KPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRT 229

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LFSATM+ +++ +    L NP R+ V++    T  T+   ++  +  +  K   L  LL
Sbjct: 230 FLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYL--FLPHKHKDIYLVYLL 287

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   ++ IIF         +   L   GF    +HG + Q +R+  L  F+  +  ++
Sbjct: 288 -NEFVGQSAIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDIL 346

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V NFD+P  ++ Y+HR+GRT RAG+ G A + V + D++    
Sbjct: 347 VATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLR 406

Query: 360 IEKLIEKKV 368
           IE  + KK+
Sbjct: 407 IEGALGKKL 415


>gi|28393424|gb|AAO42134.1| putative DEAD/DEAH box RNA helicase [Arabidopsis thaliana]
          Length = 633

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 144/362 (39%), Positives = 207/362 (57%), Gaps = 23/362 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++ L   +   +    YVKPTP+Q   IP++L+  D+   AQTG+GKTA+F  P+++ 
Sbjct: 161 FAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISG 220

Query: 63  LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           + K +       +R   P  +IL PTRELA+Q+ D  +++     + V +  GG P   Q
Sbjct: 221 IMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKRFSYQTGVKVVVAYGGTPINQQ 280

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++LERG D+L+ TPGR+ D   R ++ M  I  L +DEADRMLDMGF P I+ I   + 
Sbjct: 281 LRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMD 340

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTLLFSAT   E+Q+++ +FL N   + V    S+ + I       +   S K
Sbjct: 341 MPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQR--VEFVLDSDK 398

Query: 232 CALLQQLLQSQDTMKNGI--------IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + L  LL +Q   +NGI        +F   K+   +L + L   GF   +IHG+  Q+ 
Sbjct: 399 RSHLMDLLHAQ--RENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQE 456

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L  FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G
Sbjct: 457 REVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 516

Query: 344 KA 345
            A
Sbjct: 517 LA 518


>gi|77457664|ref|YP_347169.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1]
 gi|77381667|gb|ABA73180.1| ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 446

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 216/370 (58%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G A+VR+  +TLIL PTRELA Q     E++ +   +   L+ GG  F+ Q   L +
Sbjct: 62  L-IGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+LI TPGR+++  N G L +  +E+LV+DEADRMLDMGF   +Q +    P  +QT+
Sbjct: 121 VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTM 180

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLL 239
           LFSAT     L+++    L NP+ +++N  S   +T  +    A + Q+ ++       L
Sbjct: 181 LFSATTGGSGLREMIAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQHKEQIV---NWL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +T +  I+F N +     +   L  Q +    +HG  DQ+ R   +   K+G ++++
Sbjct: 238 LANETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + +
Sbjct: 298 VATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSS 357

Query: 360 IEKLIEKKVD 369
           IE+ +++  +
Sbjct: 358 IERYLKQSFE 367


>gi|315224756|ref|ZP_07866579.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga
           ochracea F0287]
 gi|314945384|gb|EFS97410.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga
           ochracea F0287]
          Length = 584

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 131/364 (35%), Positives = 215/364 (59%), Gaps = 8/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61
           F  LGL+  ++ A+ D G+  P+ IQ K IP +L    D+  +AQTGTGKTA+F  P+L 
Sbjct: 4   FEQLGLNEPILKAISDMGFETPSEIQQKAIPTLLANGADMVALAQTGTGKTATFGFPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
           +++      R+ + LIL PTREL  Q+A     Y K    + V  + GG   E Q + L+
Sbjct: 64  LIDTDS---RVTQGLILSPTRELCLQIASELRNYAKYLTKVNVVAVYGGASIEEQARSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA +++ TPGR+ D   R  + +++I   V+DEAD ML+MGF   I  I S  P  + T
Sbjct: 121 KGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILSHTPQEKST 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +E+ K++  F++ P  I V T +    T++H +     ++  +   L++L  
Sbjct: 181 WLFSATMPNEVAKIARKFMRKPIEITVGTRNQATNTVQHEYYIVSGRHRYQA--LKRLAD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   + + ++FC  K++   +   L + G++  A+HG++ Q  R  ++ +F+   IQ++V
Sbjct: 239 ANPDIFS-VVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQMLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV ++ +P+  E Y HR GRTGRAG+ G +  ++ K ++K I  I
Sbjct: 298 ATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVILPKSEVKKIKTI 357

Query: 361 EKLI 364
           EK+I
Sbjct: 358 EKMI 361


>gi|16272370|ref|NP_438583.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae Rd KW20]
 gi|260580515|ref|ZP_05848343.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae RdAW]
 gi|1174440|sp|P44701|SRMB_HAEIN RecName: Full=ATP-dependent RNA helicase srmB homolog
 gi|1573394|gb|AAC22078.1| ATP-dependent RNA helicase (srmB) [Haemophilus influenzae Rd KW20]
 gi|260092857|gb|EEW76792.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae RdAW]
          Length = 439

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 136/383 (35%), Positives = 214/383 (55%), Gaps = 6/383 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP L  
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEESDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++        
Sbjct: 66  LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QTL
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  EL    +E  L +P +++        + I   +    +    K  LL + ++
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++  + GI+F  ++++   L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 245 TEEVTR-GIVFIRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381
           ++  E+  K   L G      PP
Sbjct: 364 KRYTEEILKARILAGLEPRTKPP 386


>gi|302338831|ref|YP_003804037.1| DEAD/DEAH box helicase [Spirochaeta smaragdinae DSM 11293]
 gi|301636016|gb|ADK81443.1| DEAD/DEAH box helicase domain protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 542

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 218/367 (59%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61
           F DLGLS + + A++  G+ +PT IQ +TIP++L    ++   AQTGTGKTA+F LP+L 
Sbjct: 7   FQDLGLSQETLDAIVKKGFEEPTTIQARTIPVMLHSDANIIAQAQTGTGKTAAFGLPLLD 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++      R  + L+L PTRELA QV++    +  +  + +  + GG   + Q ++L++
Sbjct: 67  LVD---PVSRTVQALVLVPTRELAIQVSEEINSFRGSKKVRIVPIYGGQSIDQQLRRLKQ 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGRI+DH NR  L +  I  L++DEAD ML+MGFI  ++ I       ++TL
Sbjct: 124 GVQIVVGTPGRIIDHLNRKTLNLTAISHLILDEADEMLNMGFIDEMEEILKHTNPDKRTL 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D+++K++ ++++  + I V     T    E  +    A  S K   L +++  
Sbjct: 184 LFSATMPDKIKKLANDYMEGYELIAVEKEQLTTNLTEQIYFEVKA--SDKFEALCRIIDI 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D+   G++FC  K +V  + + L  +G+    +HG+I Q  R + L  FK   I ++VA
Sbjct: 242 EDSF-YGLVFCRTKNDVDTVVNHLLDRGYDAAPLHGDISQAQRERTLGKFKRQNINILVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ ++ HV N+ +P   E Y+HRIGRTGRAG  G A T +   + K +  I 
Sbjct: 301 TDVAARGIDVNNLTHVINYSLPQDPEAYVHRIGRTGRAGNEGTAITFITPSEYKRLMFIR 360

Query: 362 KLIEKKV 368
           K+ +  +
Sbjct: 361 KITKTDI 367


>gi|256819312|ref|YP_003140591.1| DEAD/DEAH box helicase domain-containing protein [Capnocytophaga
           ochracea DSM 7271]
 gi|256580895|gb|ACU92030.1| DEAD/DEAH box helicase domain protein [Capnocytophaga ochracea DSM
           7271]
          Length = 584

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 131/364 (35%), Positives = 215/364 (59%), Gaps = 8/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61
           F  LGL+  ++ A+ D G+  P+ IQ K IP +L    D+  +AQTGTGKTA+F  P+L 
Sbjct: 4   FEQLGLNEPILKAISDMGFETPSEIQQKAIPTLLANGADMVALAQTGTGKTAAFGFPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           +++      R+ + LIL PTREL  Q+A     Y K    + V  + GG   E Q + L+
Sbjct: 64  LIDTDS---RVTQGLILSPTRELCLQIASELRNYAKYLPKVNVVAVYGGASIEEQARSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA +++ TPGR+ D   R  + +++I   V+DEAD ML+MGF   I  I S  P  + T
Sbjct: 121 KGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILSHTPQEKST 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +E+ K++  F++ P  I V T +    T++H +     ++  +   L++L  
Sbjct: 181 WLFSATMPNEVAKIARKFMRKPIEITVGTRNQATNTVQHEYYIVSGRHRYQA--LKRLAD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   + + ++FC  K++   +   L + G++  A+HG++ Q  R  ++ +F+   IQ++V
Sbjct: 239 ANPDIFS-VVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQMLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV ++ +P+  E Y HR GRTGRAG+ G +  ++ K ++K I  I
Sbjct: 298 ATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVILPKSEVKKIKTI 357

Query: 361 EKLI 364
           EK+I
Sbjct: 358 EKMI 361


>gi|170758858|ref|YP_001787102.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405847|gb|ACA54258.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 481

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 217/368 (58%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  LS +++ ++   GY  P+ +Q + IPL+L+  D+   ++TG+GKTA+F +P  
Sbjct: 4   LGFENYELSDEILKSLGRLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIP-- 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I EK     + P+ L+L PTRELA Q+ +          L    + G  P   Q + L+
Sbjct: 62  -ICEKIELEEKEPQVLVLTPTRELALQIKEEISSIALYRRLRCTAIFGKQPMNLQKRDLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR LDH  R  L +  I+  V+DEAD ML+MGFI  ++ +   +P  R T
Sbjct: 121 QRVHLVVGTPGRTLDHIERENLNLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRVT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ ++++ + + ++ NP+ I +N  + T  TI  C+   Y    K    L Q + 
Sbjct: 181 MLFSATIPEKIENLCKKYMNNPENININPENITTGTINQCY---YEVEDKDKFFLLQRII 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++ + N IIFCN ++ V  +   ++K+GF+   +HG ++Q+ R++ +  FKEG  Q +V
Sbjct: 238 YKEVVDNSIIFCNTRERVDEVLKHMKKKGFNAIGLHGGMEQKDRLETMKKFKEGEFQFLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ I ++ HV N+++P   E+Y+HRIGRTGRAG+ G A T +    ++ +  I
Sbjct: 298 CTDVAARGIHIENISHVVNYEMPYEKESYVHRIGRTGRAGKEGVAITFIESNKVRFLKDI 357

Query: 361 EKLIEKKV 368
           E  IEK++
Sbjct: 358 EDYIEKEI 365


>gi|168042111|ref|XP_001773533.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675235|gb|EDQ61733.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 600

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 207/368 (56%), Gaps = 19/368 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++ L P +   +    Y KPTP+Q   IP+ L   D+   AQTG+GKTA+F  P++  
Sbjct: 147 FAEIDLGPALNENIRRCKYTKPTPVQKYAIPISLHGRDLMACAQTGSGKTAAFCFPIIAG 206

Query: 63  LEK----GR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           + +    GR    R  +P  LIL PTREL+ Q++D  +K+     + V +  GG P   Q
Sbjct: 207 IMRNTPPGRPRGGRKALPLALILSPTRELSCQISDEAKKFAYQTGIRVVVAYGGAPVHNQ 266

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            +++ERG D+L+ TPGR+ D   R ++ ++ +  L +DEADRMLDMGF P I+ I   + 
Sbjct: 267 LREMERGVDILVATPGRLSDLLERARVSLSMVRYLALDEADRMLDMGFEPQIRRIVEQMD 326

Query: 176 FT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQT+LFSAT   E+Q+++ +FL N   + V    S+ + I       Y Q   K
Sbjct: 327 MPPAGERQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQ--RVEYVQDVDK 384

Query: 232 CALLQQLLQSQDTMKN------GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            ++L  L+ +Q  +         ++F   KK    L   L + GF    IHG+  Q+ R 
Sbjct: 385 RSMLMDLIHAQSALAPPGQQTLTLVFVETKKGADALEDWLCRLGFPATTIHGDRSQQERE 444

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L +F+ G   ++VA+D+AARGLDIP V HV NFD+P+  ++Y+HRIGRTGRAG+ G A
Sbjct: 445 HALRSFRTGVTPILVATDVAARGLDIPHVAHVVNFDLPSDIDDYVHRIGRTGRAGKSGVA 504

Query: 346 FTLVAKED 353
                ++D
Sbjct: 505 TAFFNEKD 512


>gi|225850461|ref|YP_002730695.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
 gi|225644960|gb|ACO03146.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
          Length = 403

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 146/388 (37%), Positives = 226/388 (58%), Gaps = 12/388 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  +S + + ++   G+ KPT +Q KTIPL+L+  D+   AQTGTGKTA+F +P  
Sbjct: 11  LSFNDFQISKETLNSIRKMGFKKPTEVQEKTIPLILEGKDIIAQAQTGTGKTAAFGIP-- 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I+E    + R  + L+L PTRELA QV    +  G+   +    + GG     Q   L+
Sbjct: 69  -IVETVNTKSRKIQALVLVPTRELAIQVTKEIKDIGREKRIFALAVYGGKSIRHQIDFLK 127

Query: 121 RGADVLIC-TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G DV+I  TPGRI D   R  L +N+++I V+DEADRMLDMGFI  I+ I    P  +Q
Sbjct: 128 KGKDVVIVGTPGRIKDLIERKVLNLNDVKIFVLDEADRMLDMGFIEDIEFIFEQTPPVKQ 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRI-EVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           TLLFSATM   + +++E FL +   I ++     T + I+    A      K+   L ++
Sbjct: 188 TLLFSATMPKAIMRLAERFLNDDYEIVKIKPEEVTVDRIKQK--AYRVDTGKEFETLTKI 245

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +++  K  I+F   K+    L   L ++GF+  AIHG+  Q  R ++L +F+   I +
Sbjct: 246 L-NENEGKKSIVFTETKRGADELSKKLRREGFNADAIHGDYSQAKRERVLRDFRRNRIDI 304

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  V  V+N+ +P   E+YIHRIGRTGRAG+ G A ++++  + +  +
Sbjct: 305 LVATDVAARGLDIKGVDVVYNYSLPRDVESYIHRIGRTGRAGKDGLAISIISTLEDRLFE 364

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKID 386
            ++K     +  +N  LS  + P+EK++
Sbjct: 365 IVKKKTRSDIQLIN--LS--DKPIEKLE 388


>gi|73992237|ref|XP_534451.2| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX27
           (DEAD-box protein 27) isoform 1 [Canis familiaris]
          Length = 765

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 161/470 (34%), Positives = 251/470 (53%), Gaps = 31/470 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 185 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 244

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++  +  N+T  L +GG+  ++Q   L 
Sbjct: 245 ERLIYKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALR 304

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 305 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 364

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   FV            +   L
Sbjct: 365 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAAL 424

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 425 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 484

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K +  
Sbjct: 485 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 544

Query: 360 IEKL-----------------IEKKVDWLNGDLSS-LNPPLEKIDI----AQHNHARKNN 397
           I K                     K++ +  D+ + L    E+ ++    AQ N A++  
Sbjct: 545 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQQSEAQINTAKR-- 602

Query: 398 PIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
            + ++  G  +   N+  ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 603 -LLEREKG--KEASNHEPERSWFQTKEERKKEKIAKALQEFD---LALRG 646


>gi|50291507|ref|XP_448186.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661162|sp|Q6FNK8|RRP3_CANGA RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|49527497|emb|CAG61137.1| unnamed protein product [Candida glabrata]
          Length = 493

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 146/371 (39%), Positives = 216/371 (58%), Gaps = 14/371 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P+++ A  +  + KPTPIQ + IP  L   DV G+AQTG+GKTA+F +P+L  
Sbjct: 75  FAQLNLVPELIQACQNLNFTKPTPIQARAIPPALAGSDVIGLAQTGSGKTAAFAIPILNK 134

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L + +         +L PTRELA Q+ + F+  G    +    ++GG+    Q + L R 
Sbjct: 135 LWEDQQPYY---ACVLAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRK 191

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180
             ++I TPGR++DH    K   + N++ LV+DEADR+LDM F P +  I  ++P   R T
Sbjct: 192 PHIIIATPGRLMDHLENTKGFSLKNLKFLVMDEADRLLDMEFGPVLDRILKIIPTKGRTT 251

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+    L NP +  V+    T +T+    +        K   L  LL 
Sbjct: 252 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL--KNTFLIYLL- 308

Query: 241 SQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++   K  IIF   K N   +  LC+ LE   FS  A+HG+++Q  R   L  FK G   
Sbjct: 309 NEFIGKTVIIFTRTKANAERLSGLCNLLE---FSATALHGDLNQNQRTGALDLFKAGKRS 365

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV++ D++ I
Sbjct: 366 ILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELI 425

Query: 358 DAIEKLIEKKV 368
             IE+++ KK+
Sbjct: 426 LRIEEVLGKKL 436


>gi|260072689|gb|ACX30586.1| hypothetical protein SUP05_FGYC65E210031 [uncultured SUP05 cluster
           bacterium]
          Length = 440

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 143/344 (41%), Positives = 205/344 (59%), Gaps = 9/344 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY   TPIQ  ++P +L   DV G  +TG+GKTA+F L +L  L+    +    ++++L 
Sbjct: 2   GYQSMTPIQQLSLPAILSGKDVIGQGKTGSGKTAAFGLGLLQKLD---VKSFKAQSIVLC 58

Query: 80  PTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    K  +  +N+ V  L GG PF  Q   LE G  +++ TPGRI +H  
Sbjct: 59  PTRELADQVATEIRKLARAIHNIKVLTLCGGAPFGPQIGSLEHGVHIVVGTPGRIEEHLR 118

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +G L + +I  LV+DEADRMLDMGF   I  I   +P  RQTLLFSAT  +E+  ++E  
Sbjct: 119 KGTLKLGSITTLVLDEADRMLDMGFQDTIDEIIEKIPSKRQTLLFSATFPNEIASIAERV 178

Query: 199 LQNPKRIEVNTPSSTAE-TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
           +QNP  +E   PS+  E TI+  F    +   +  AL  +LL ++   ++ +IFCN K +
Sbjct: 179 MQNPTMVE--APSTHEESTIKQYFYKANSADDRMTAL--RLLLAKHKPESVLIFCNTKID 234

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
             ++   L   GF   AIHG++DQR R + L  F   ++ ++VA+D+AARGLDI  +  V
Sbjct: 235 TQDVADELVYYGFYALAIHGDLDQRERDQALIRFSNKSVSVLVATDVAARGLDIDALDMV 294

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
            NF++ +  E ++HRIGRTGRAGR G A TL    +   +DA+E
Sbjct: 295 VNFNIAHDPEVHVHRIGRTGRAGRSGIACTLYGDRETHKLDALE 338


>gi|242003922|ref|XP_002422909.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212505802|gb|EEB10171.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 458

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 141/391 (36%), Positives = 226/391 (57%), Gaps = 9/391 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG+   V+C   ++  +  PT IQ + IPL LQ  DV G+A+TG+GKT +F LP+L 
Sbjct: 24  FKDLGIV-DVLCQTCESLKWKAPTKIQKEAIPLTLQGRDVIGLAETGSGKTGAFALPILQ 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R      LIL PTRELA Q+++ F+  G    +  A+++GG+   +Q   L +
Sbjct: 83  ALLQNPQRYF---ALILTPTRELAFQISEQFQALGSKIGVKTAVIVGGMDMMSQALLLAK 139

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V+I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 140 KPHVIIATPGRLVDHLENTKGFNLKALKFLVMDEADRILNMDFEVEVDKILKVIPRERRT 199

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATMT ++QK+    L +P ++EV++   T + ++  ++    ++  K   L  ++ 
Sbjct: 200 LLFSATMTQKVQKLQRASLHDPVKVEVSSKYQTVDKLQQYYLFIPVKF--KDVYLVSII- 256

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      +IFC    N +     L + GF+   +HG + Q  R+  L+ F+     +++
Sbjct: 257 NEMAGNTFMIFCGTCHNTLRTALLLRQLGFTAIPLHGQMSQNKRLGALTKFRAKNRSILI 316

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 317 STDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRI 376

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
           E+LI KK+     +   +    E++  AQ N
Sbjct: 377 EQLIGKKLPLFKIEEDEVMTLQERVAEAQRN 407


>gi|299470793|emb|CBN79839.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 572

 Score =  252 bits (644), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 135/352 (38%), Positives = 201/352 (57%), Gaps = 11/352 (3%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--EKGRARVRM 72
           A+  AGY  PTP Q ++ P+ L   D+  +A+TG+GKT  F+LP    L    G  + RM
Sbjct: 160 ALKAAGYPAPTPTQAQSWPIALSGRDIISVARTGSGKTLGFLLPAFHALLNRPGGCKPRM 219

Query: 73  --PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130
             P  ++L PTRELA Q+ +   K+GK   +    + GG P   Q K ++ G  V+I TP
Sbjct: 220 GGPYIVVLAPTRELACQINEEATKFGKAAGIRSTTVYGGSPKYPQIKAIQSGVQVVIATP 279

Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190
           GR+ D    GK+ M N+  L +DEADRMLDMGF P I+ I   +P  RQTL F+AT   E
Sbjct: 280 GRLNDIMEMGKINMTNVMTLALDEADRMLDMGFEPQIRTIIDAMPAKRQTLFFTATWPKE 339

Query: 191 LQKVSENFLQNPKRIEVNTP---SSTAETIEHCFVATYAQYSKK-CALLQQLLQSQDTMK 246
           +Q+++ +F+ NP  I V      ++     +H  +        K   LL +L ++     
Sbjct: 340 VQRLARDFVTNPVHITVGDAGKLNANKSITQHIHIVDERDKGDKLWELLTKLHENPPKAD 399

Query: 247 NG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
           +G  IIF ++K+N   L  +   +GF+V ++HG+ +Q  R K++  ++ G ++++VA+D+
Sbjct: 400 HGKTIIFSSKKRNCDKLAQAAWDRGFAVDSLHGDREQWERTKVMDQYRSGEVRMLVATDV 459

Query: 305 AARGLDIPDVGHVFNFDVP-NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           AARGLD+ D+ +V N+D P +  ENYIHRIGRT R    G AFT     D K
Sbjct: 460 AARGLDVKDISYVINYDFPVDGVENYIHRIGRTARGNASGDAFTFFTSSDAK 511


>gi|195376137|ref|XP_002046853.1| GJ12262 [Drosophila virilis]
 gi|194154011|gb|EDW69195.1| GJ12262 [Drosophila virilis]
          Length = 778

 Score =  252 bits (644), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 213/373 (57%), Gaps = 12/373 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F + G    V+  +   G+ KPT IQ + +P+ L   D+  +AQTG+GKT ++VLP +
Sbjct: 142 IEFEEGGFPDYVMNEIRKQGFTKPTAIQAQGMPIALSGRDLVAVAQTGSGKTLAYVLPAV 201

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA Q+     ++G N  +    + GG P   
Sbjct: 202 VHINNQPRLERGDG----PIALVLAPTRELAQQIQQVASEFGSNTQVRNTCIFGGAPKGQ 257

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 258 QARDLERGVEIVIATPGRLIDFLERGTTTLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 317

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQ L++SAT   E+++++E FL N  ++ + + S +A       V    +  K   L
Sbjct: 318 RPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDESEKIVKL 377

Query: 235 LQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +Q L Q S +     IIF   KK V  +  ++ +QG+  CAIHG+  Q+ R  +LS+F+ 
Sbjct: 378 IQLLTQISGENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRN 437

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    +
Sbjct: 438 GRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTNSN 497

Query: 354 I-KHIDAIEKLIE 365
             K  D I+ L E
Sbjct: 498 ANKANDLIQVLRE 510


>gi|331217131|ref|XP_003321244.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309300234|gb|EFP76825.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 547

 Score =  252 bits (644), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 131/369 (35%), Positives = 211/369 (57%), Gaps = 10/369 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++ G    ++  + +AG+  P+PIQ +  P+ L   DV  ++ TG+GKT +F +P + 
Sbjct: 114 NFSEAGFPDYIMSEIRNAGFNAPSPIQCQAWPMALSGRDVVAVSATGSGKTIAFSIPAMI 173

Query: 62  ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                 +L  G      P  LIL PTRELA Q+     K+G +  +    + GG+P   Q
Sbjct: 174 HINAQPLLAPGDG----PIVLILAPTRELAVQIQGECTKFGASSRIRNTCVYGGVPKGQQ 229

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L RGA+++I TPGR++D     K  ++ +  LV+DEADRMLDMGF P I+ I   + 
Sbjct: 230 IRDLTRGAEIVIATPGRLIDMLESRKTNLHRVTYLVMDEADRMLDMGFEPQIKKIVEQIR 289

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTL+FSAT   E+Q+++  +L++  ++ V +   TA       V   + + K+  L+
Sbjct: 290 PDRQTLMFSATWPKEVQRLASEYLKDFIQVNVGSLDLTANINITQIVEVCSDFEKRGKLI 349

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + L +        +IF   K+   +L   L + G+   AIHG+  Q+ R  +L  FK G 
Sbjct: 350 KHLEKISSESAKVLIFVGTKRVADDLTKYLRQDGWPSLAIHGDKQQQERDWVLEEFKSGR 409

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +M+A+D+A+RGLD+ D+ +V N+D+PN  E+YIHRIGRTGRAGR G A++ ++ +  K
Sbjct: 410 SPIMIATDVASRGLDVKDIAYVINYDMPNGIEDYIHRIGRTGRAGRTGTAYSYISADQSK 469

Query: 356 HIDAIEKLI 364
               + K++
Sbjct: 470 LAKELVKIL 478


>gi|223634733|sp|A5DQF1|RRP3_PICGU RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|190348857|gb|EDK41404.2| hypothetical protein PGUG_05502 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 475

 Score =  252 bits (644), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 138/366 (37%), Positives = 211/366 (57%), Gaps = 13/366 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L P+++ A+    Y KPTPIQ   IP  L+  D+ G+AQTG+GKTA+F +P+L  
Sbjct: 66  FSELNLVPELMEAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQS 125

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L + +   R    L+L PTRELA Q+ + F+  G    +    ++GG+    Q + L R 
Sbjct: 126 LWEAQ---RPYYALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQARDLMRK 182

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +L+ TPGRI+DH    K   + +++ LV+DEADR+LDM F P +  I  ++P  R T 
Sbjct: 183 PHILVATPGRIMDHLENTKGFSLKSLQYLVMDEADRLLDMDFGPALDKILKVIPTKRTTY 242

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT+++ K+    L  P ++ V+    TA+ +    +     Y  K   L  LL +
Sbjct: 243 LFSATMTNKIAKLQRASLHEPVKVAVSNKYQTADNLVQSMMLVSDGY--KNTFLIHLL-N 299

Query: 242 QDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   K+ I+F   C   +    L   L   GFS   +HG + Q  R+  L+ FK G   +
Sbjct: 300 EFMGKSIIVFTRTCAHTQRSTLLARIL---GFSAVPLHGQLTQSQRLGSLNKFKSGKANI 356

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLDIP V  V N+D+P  ++ YIHR+GRT RAG+ GK+ +LV + D++   
Sbjct: 357 LIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLEMYL 416

Query: 359 AIEKLI 364
            IE ++
Sbjct: 417 RIESVL 422


>gi|212710675|ref|ZP_03318803.1| hypothetical protein PROVALCAL_01741 [Providencia alcalifaciens DSM
           30120]
 gi|212686756|gb|EEB46284.1| hypothetical protein PROVALCAL_01741 [Providencia alcalifaciens DSM
           30120]
          Length = 445

 Score =  252 bits (644), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 209/368 (56%), Gaps = 4/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ A+ + GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP +  
Sbjct: 6   FSELELDESLITALTNKGYERPTAIQEAAIPAAMDGRDVLGSAPTGTGKTAAFLLPAIQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVAD  ++   + +L VA + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRVLILTPTRELAMQVADQAKELCAHNHLDVATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          +EIL++DEADRMLDMGF   I+ I     + +QT+
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVEILILDEADRMLDMGFAHDIETIAGETRWRKQTM 185

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  E ++  +E  L++P  I+        + I+  F         K ALL  LL+
Sbjct: 186 LFSATLEGEAIRDFAERLLEDPIEIDAEPSRRERKKIQQ-FYYRADTLEHKTALLCHLLK 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D  K+ I+F  +++ V  +   L   G   C + G + Q  R + +     G ++++V
Sbjct: 245 QEDVTKS-IVFVRKRERVREVVQWLRDAGIEPCYLEGEMVQAKRNEAVRRLVTGQVKVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI +V HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  I
Sbjct: 304 ATDVASRGLDIENVSHVFNFDLPRTADVYLHRIGRTGRAGRKGTALSLVEAHDFPLLGKI 363

Query: 361 EKLIEKKV 368
            + IE  +
Sbjct: 364 TRYIEDPI 371


>gi|114321219|ref|YP_742902.1| DEAD/DEAH box helicase domain-containing protein [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227613|gb|ABI57412.1| DEAD/DEAH box helicase domain protein [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 438

 Score =  252 bits (644), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 215/373 (57%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F  LGL   ++  +  AG+   TPIQ  T+P  L+  D+ G AQTGTGK+A+F+L     
Sbjct: 11  FDTLGLHDALMDGIKRAGFEYCTPIQAATLPKALEGRDIAGQAQTGTGKSAAFLLAAMHR 70

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            M   +E+G+     P TLIL PTRELA Q+  +  + G+   L  A + GG  +EAQ +
Sbjct: 71  LMTVPVEEGK---EGPWTLILAPTRELALQIHRDALQLGRYTGLKCAAIYGGTGYEAQRQ 127

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           +L+ G D++I TPGR++D F +    + +IE++++DEADRM D+GFI  I+ +   +P  
Sbjct: 128 QLQEGVDIIIGTPGRVIDFFKQRIFHLKHIEVVILDEADRMFDLGFIADIRYLMRRMPEP 187

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R  +LFSAT++  + +++   L +P+ + + +   TA+ +       +    +K  LL
Sbjct: 188 SKRMNMLFSATLSHRVMELAYEHLNDPEVVRIESEQITADKVRQKLY--HVSKDEKIPLL 245

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++ ++ M   IIF N K+    +   L         I G+I Q+ R  +L  F++G 
Sbjct: 246 LGLIRQEEAMNRSIIFVNTKRAADRVTGYLLGNDIEAAVISGDIPQKKRESLLKRFQDGE 305

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VA+D+AARGL I DV HV N+D+P   E+Y+HRIGRT RAG  G A +   +E + 
Sbjct: 306 LRFLVATDVAARGLHIEDVSHVINYDLPQDPEDYVHRIGRTARAGASGDAISFACEEYVF 365

Query: 356 HIDAIEKLIEKKV 368
            +  IE  IE+++
Sbjct: 366 SLPDIESFIEQRI 378


>gi|255691877|ref|ZP_05415552.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides
           finegoldii DSM 17565]
 gi|260622430|gb|EEX45301.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides
           finegoldii DSM 17565]
          Length = 421

 Score =  252 bits (644), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 135/371 (36%), Positives = 217/371 (58%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ + IP++L+  D+  +AQTGTGKTA+F+LP+L
Sbjct: 1   MKFSELQLNANVLEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             L +G         +I+ PTRELA Q+    E +     ++   + GG   I FE Q K
Sbjct: 61  NKLSEGNHPEDAINCIIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYDDIMQIVKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++   L NP  I++       + I+  +V    Q   K  +++ 
Sbjct: 181 RQTVMFSATMPAKIQQLANTILNNPSEIKLAVSKPAEKIIQAAYVCYENQ---KLGIIRS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L  + +  +  IIF + K  V  +  +L     +V  +H +++Q  R  ++  FK G + 
Sbjct: 238 LF-ADEVPERVIIFASSKIKVKEVAKALMAMKLNVGEMHSDLEQAQRETVMHEFKAGRVN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V NFDVP+ +E+Y+HRIGRT RA   G A T V++++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFVSEKEQSNF 356

Query: 358 DAIEKLIEKKV 368
            +IE  +EK +
Sbjct: 357 KSIENFLEKDI 367


>gi|168053931|ref|XP_001779387.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669185|gb|EDQ55777.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 741

 Score =  252 bits (644), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 139/358 (38%), Positives = 213/358 (59%), Gaps = 8/358 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F DLG    ++ A+   GY +PTPIQ ++ P+VL   D+ GIA+TG+GKTA+FVLPM+  
Sbjct: 236 FEDLGFDASLMGAISKQGYERPTPIQCQSCPIVLSGRDLIGIAKTGSGKTAAFVLPMMVH 295

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++    +   P  +I  PTRELA Q+    +K+ K + + ++ + GG+    Q K+L+
Sbjct: 296 IMDQPELGKGEGPIGVICAPTRELAQQIYSEAKKFAKVHGIRISGVYGGMSKFEQFKELK 355

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G +V++ TPGR++D      L M+    LV+DEADRM D+GF P I++I   +   RQT
Sbjct: 356 AGCEVVVATPGRLIDMIKMKALSMHRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 415

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +++++   L +P R+ V    S  E I        +   K   LL +L  
Sbjct: 416 LLFSATMPKRVERLAREILTDPIRVTVGEIGSANEDITQVVTVLPSDAEKTPWLLDRL-- 473

Query: 241 SQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            Q  + +G  ++F + K  V  L   + + GF V A+HG+ DQ +RM++L  FK G   +
Sbjct: 474 -QPFVDDGDVLVFASTKLRVEELEGKISEAGFKVAALHGDKDQATRMEVLQKFKNGIYHI 532

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIK 355
           +VA+D+AARGLDI  +  V N D+    ++++HRIGRTGRAG + G A TLV  ++ +
Sbjct: 533 LVATDVAARGLDIKSIKTVVNVDIARDMDSHVHRIGRTGRAGDKDGVAHTLVTGKEAR 590


>gi|152986227|ref|YP_001345953.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PA7]
 gi|150961385|gb|ABR83410.1| DEAD/DEAH box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Pseudomonas aeruginosa PA7]
          Length = 458

 Score =  252 bits (644), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 224/392 (57%), Gaps = 13/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LS  ++  +   GY + TPIQ +++PL+LQ  D+   A+TG+GKTA+F L +L  
Sbjct: 6   FSSLPLSADLLANLDSLGYREMTPIQAQSLPLILQGRDLIAQAKTGSGKTAAFGLGLLAP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L     R    + L+L PTRELA QVA    +  +   N+ V  L GG+P+  Q   LE 
Sbjct: 66  LNP---RYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI +H  +G L+++ +  LV+DEADRMLDMGF   I  I   +P  RQTL
Sbjct: 123 GAHVVVGTPGRIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPERRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D ++K+++ F+++P++++V +  + ++  +  F     Q       L Q  + 
Sbjct: 183 LFSATYPDGIEKLAKAFMRDPQQVKVESLHTDSQIEQRFFEIDPKQRMDAVVRLLQHFRP 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q      + FC  ++    L  +L+    S  A+HG+++QR R ++L+ F   +  ++VA
Sbjct: 243 QSC----VAFCQTRQQCQELADALKAHRISALALHGDLEQRERDQVLTVFANRSCTVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++    E +IHRIGR+GRAG  G A +LVA  +     AIE
Sbjct: 299 TDVAARGLDIAALETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIE 358

Query: 362 KLIEKKVDW-----LNGDLSSLNPPLEKIDIA 388
            L ++ + W     L  +   L PP+  + IA
Sbjct: 359 DLQKQPLAWYALGQLKANPEPLLPPMSTLCIA 390


>gi|297817170|ref|XP_002876468.1| hypothetical protein ARALYDRAFT_486308 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322306|gb|EFH52727.1| hypothetical protein ARALYDRAFT_486308 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 639

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 146/390 (37%), Positives = 212/390 (54%), Gaps = 23/390 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++ L   +   +    YVKPTP+Q   IP++    D+   AQTG+GKTA+F  P+++ 
Sbjct: 139 FAEIDLGEVLNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISG 198

Query: 63  LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           + K +        R   P  +IL PTRELA Q+ D   K+     + V +  GG P   Q
Sbjct: 199 IMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQ 258

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV- 174
            ++LERG D+L+ TPGR+ D   RG++ +  ++ L +DEADRMLDMGF P I+ I   + 
Sbjct: 259 IRELERGVDILVATPGRLNDLLERGRVSLQMVKFLALDEADRMLDMGFEPQIRKIVQQMD 318

Query: 175 ---PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
              P  RQT+LFSAT   E+Q+++ +FL N   + V    S+ + I       +   S K
Sbjct: 319 MPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQ--RVEFVHDSDK 376

Query: 232 CALLQQLLQSQDTMKN------GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            + L  LL +Q    N       ++F   KK   +L + L   GF    IHG+  Q+ R 
Sbjct: 377 RSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQERE 436

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG  G A
Sbjct: 437 VALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLA 496

Query: 346 FTLVAKEDIKHIDAIEKLIEKK----VDWL 371
                  +      + +L+++      DWL
Sbjct: 497 TAFFNDNNTSMAKPLAELMQEANQEVPDWL 526


>gi|251789631|ref|YP_003004352.1| ATP-dependent RNA helicase DbpA [Dickeya zeae Ech1591]
 gi|247538252|gb|ACT06873.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
          Length = 457

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 218/370 (58%), Gaps = 9/370 (2%)

Query: 3   FADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA+L   P      L + GY+  TPIQ   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FAELNALPAAQLTTLNELGYLTMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+ GR   +   +L+L PTRELA QVA+   +  +   N+ V  L GG+PF  Q   L 
Sbjct: 64  HLDAGRFNTQ---SLVLCPTRELADQVANELRRLARGMPNIKVLTLCGGVPFGLQRDSLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V++ TPGR+LDH  +  + ++++  LV+DEADRMLDMGF   I  + + VP   QT
Sbjct: 121 HAPHVIVATPGRLLDHLKKETVSLDDLRTLVLDEADRMLDMGFADAIDEVIAQVPTPCQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  +S    ++P  IE++T       +E  F       S K  LLQ+LL 
Sbjct: 181 LLFSATWPEAIAAISRRIQRDPLIIEIDTVDEL-PAVEQQFYEV--SRSGKLDLLQKLL- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++   + ++FCN KK+   +  +L     SV A+HG+++QR R + L  F  G+ +++V
Sbjct: 237 SREQPASCVVFCNTKKDCQAVYEALTNSNQSVLALHGDMEQRDRDQTLVRFANGSSRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +L A E+ +  +A+
Sbjct: 297 ATDVAARGLDIKALEMVINYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRANAL 356

Query: 361 EKLIEKKVDW 370
           E++++ K++W
Sbjct: 357 EEMLKMKLNW 366


>gi|238750395|ref|ZP_04611896.1| ATP-dependent RNA helicase srmB [Yersinia rohdei ATCC 43380]
 gi|238711326|gb|EEQ03543.1| ATP-dependent RNA helicase srmB [Yersinia rohdei ATCC 43380]
          Length = 438

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 137/354 (38%), Positives = 203/354 (57%), Gaps = 4/354 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP L 
Sbjct: 5   NFSELDLDERLIDALRDKGYERPTAIQASAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K+  L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I +   + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQT 184

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+  E +++ +E  L  P  +E +      + I+  +         K ALL  LL
Sbjct: 185 LLFSATLEGEAIREFAERILDEPVELEADPSRRERKKIQQWYYRA-DNIEHKTALLVHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +  K+ IIF   ++ V  L   L + G +   + G + Q  R + +    +G + ++
Sbjct: 244 KQPEVQKS-IIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+A+RGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D
Sbjct: 303 VATDVASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHD 356


>gi|118097584|ref|XP_414629.2| PREDICTED: similar to Prp5-like DEAD-box protein [Gallus gallus]
          Length = 1043

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 144/427 (33%), Positives = 236/427 (55%), Gaps = 15/427 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ A+   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 378 WVQCGISMKILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRH 437

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 438 IMDQRALEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 493

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 494 AELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 553

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           V   RQT++FSAT    ++ ++   L  P  ++V   S     +E   V    + +K   
Sbjct: 554 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQ-HVIVIEEENKFLK 612

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL+ L   Q+   + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK 
Sbjct: 613 LLELLGHYQEK-GSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKN 671

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++ 
Sbjct: 672 GTCKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQ 731

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            ++   I K +E   + +  DL  L    ++   A+    +K++    K   FD  ++  
Sbjct: 732 ARYAGDIIKALELSGNPIPADLEKLWADFKEQQKAEGKLIKKSSGFSGKGFKFDETEQAL 791

Query: 414 SSQKSHI 420
           ++++  +
Sbjct: 792 ANERKKL 798


>gi|307131092|ref|YP_003883108.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
 gi|306528621|gb|ADM98551.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
          Length = 457

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 144/370 (38%), Positives = 218/370 (58%), Gaps = 9/370 (2%)

Query: 3   FADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA+L + P      L + GY+  TPIQ   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FAELNVLPAEQLTTLNELGYLTMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+ G+   +   +L+L PTRELA QVA+   +  +   N+ V  L GG+PF  Q   L 
Sbjct: 64  QLDAGQFNTQ---SLVLCPTRELADQVANELRRLARYLPNIKVLTLCGGVPFSIQRDSLI 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +  + ++ ++ LV+DEADRMLDMGF   I  + + VP  RQT
Sbjct: 121 HAPHIIVATPGRLLDHLKKETVSLDALQTLVLDEADRMLDMGFADAIDEVIAHVPAQRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D +  +S    ++P  I ++T       IE  F       S K  LLQ+LL 
Sbjct: 181 LLFSATWPDAIAAISHRIQRDPLTIAIDTVDEL-PAIEQQFYEV--SRSGKIDLLQKLL- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++   + ++FCN KK+   +  +L     SV A+HG+++QR R + L  F  G+ +++V
Sbjct: 237 SREQPASCVVFCNTKKDCQAVYDALTDSNQSVLALHGDMEQRDRDQTLVRFANGSSRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++    E +IHRIGRT RAG  G A +L A E+ +  +A+
Sbjct: 297 ATDVAARGLDIKALEMVINYELSWDPEVHIHRIGRTARAGESGLAISLCAPEEAQRANAL 356

Query: 361 EKLIEKKVDW 370
           E+++  K++W
Sbjct: 357 EEMLNMKLNW 366


>gi|237727904|ref|ZP_04558385.1| ATP-dependent RNA helicase rhlB [Citrobacter sp. 30_2]
 gi|226910353|gb|EEH96271.1| ATP-dependent RNA helicase rhlB [Citrobacter sp. 30_2]
          Length = 422

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 144/373 (38%), Positives = 215/373 (57%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKV+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVIEALENKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P T 
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPTT 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     I+F N K    ++  SL   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIVFANTKHRCEDIWGSLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|301154759|emb|CBW14222.1| ATP-dependent RNA helicase [Haemophilus parainfluenzae T3T1]
          Length = 419

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 150/404 (37%), Positives = 227/404 (56%), Gaps = 15/404 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FADL L P V  A+ D G+   TPIQ  ++P+ LQ  DV G AQTGTGKT +F+      
Sbjct: 11  FADLPLHPIVQKALQDKGFEYCTPIQALSLPITLQGKDVAGQAQTGTGKTMAFLTATFHH 70

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  +       PR LIL PTRELA Q+  + E   +   L  AL  GG  ++ Q K +E
Sbjct: 71  LLTHQPNFATNQPRALILAPTRELAVQINHDAELLARTSGLRTALAYGGDGYDKQLKAIE 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TR 178
            G D+LI T GR++D+  +G + +++I+++V+DEADRM D+GFI  I+ +    P    R
Sbjct: 131 AGVDILIGTTGRVIDYVKQGIIRLDDIQVVVLDEADRMFDLGFIRDIRYLLRKCPSPQER 190

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237
            T+LFSAT++ ++++++   + +P+ IE+     T   I E  F   Y     K  LL  
Sbjct: 191 LTMLFSATLSYKVRELAFEDMNSPEYIEIEPEQKTGHRIKEELF---YPSNEDKIPLLLT 247

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++ ++  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G + 
Sbjct: 248 LME-EEWPERCIVFANTKHKCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGELD 306

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL I DV HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 307 ILVATDVAARGLHISDVTHVFNFDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNL 366

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            AIE+ I   +     D +SL   + K       +  K NP PQ
Sbjct: 367 PAIEEYIGHSIPVSQYDPNSLISDIPK------PYRLKRNPTPQ 404


>gi|260596009|ref|YP_003208580.1| ATP-dependent RNA helicase RhlB [Cronobacter turicensis z3032]
 gi|260215186|emb|CBA27017.1| ATP-dependent RNA helicase rhlB [Cronobacter turicensis z3032]
          Length = 421

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 151/389 (38%), Positives = 217/389 (55%), Gaps = 13/389 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P VV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPVVVQALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   K   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAAEDRQVNQPRALIMAPTRELAVQIHSDAEPLAKATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYTKQNHVNLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAAA 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           Q L  LFSAT++  +++++   + N + +EV     T   I+      Y    +K  LLQ
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIQEELF--YPSNEEKMRLLQ 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G I
Sbjct: 249 TLIE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDI 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   +
Sbjct: 308 DILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN 367

Query: 357 IDAIEKLIEKK--VDWLNGD--LSSLNPP 381
           + AIE  I     V   N D  LS L PP
Sbjct: 368 LPAIETYIGHSIPVSKYNPDALLSELPPP 396


>gi|119946353|ref|YP_944033.1| ATP-dependent RNA helicase DbpA [Psychromonas ingrahamii 37]
 gi|119864957|gb|ABM04434.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 462

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 136/367 (37%), Positives = 216/367 (58%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L   ++  +   GY   TPIQ +++P VL   DV    +TG+GKTA+F L +L  
Sbjct: 6   FSTLPLHTDLLHNLESLGYHVMTPIQAQSLPHVLAGKDVIAQGKTGSGKTAAFGLGLLEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R R++   +LIL PTRELA QV     +  +  +N+ V  L GG+PF  Q   LE 
Sbjct: 66  LSVKRFRIQ---SLILCPTRELADQVGKELRRLARTIHNIKVLTLCGGVPFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI DH  +G L ++++E+LV+DEADRMLDMGF   I  I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIEDHLRKGTLRLDDLEVLVLDEADRMLDMGFQASIDAIIDQAPKKRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  +++  +++  + +P  ++  +    +   +H +    +Q   +   L+ LLQ 
Sbjct: 183 LFSATFPEKINNIAKRIMTDPIMVKAESKHDDSVIAQHFYKVENSQ--DRMIALRLLLQK 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ ++FCN KK V  +   L  +GFS  A+HG+++Q+ R + L  F   +  ++VA
Sbjct: 241 YQP-ESSVVFCNTKKEVQEVADELANRGFSALALHGDLEQKDRDQALIRFANKSASILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++  VFN+ + +  E ++HRIGRTGRAG  G AF+  + ++   +  +E
Sbjct: 300 TDVAARGLDIDNLSAVFNYHIAHDQELHVHRIGRTGRAGNKGLAFSFYSDKEHHKVSVLE 359

Query: 362 KLIEKKV 368
             +++ +
Sbjct: 360 DYLDRSI 366


>gi|331005214|ref|ZP_08328607.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC1989]
 gi|330420957|gb|EGG95230.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC1989]
          Length = 462

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 140/361 (38%), Positives = 213/361 (59%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L+  ++  +    Y + T IQ +++P ++   DV   A+TG+GKTA+F L ML  
Sbjct: 6   FQSLSLNTSLLENLKSLQYKEMTEIQAQSLPPMIAGQDVIAQAKTGSGKTAAFGLAMLNK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L+  R RV+   +L+L PTRELA QVA    + G+  +N+ V  L GG PF  Q   LE 
Sbjct: 66  LQVKRFRVQ---SLVLCPTRELADQVAKEIRRLGRGIHNIKVLTLCGGAPFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI +H  +G L ++++   V+DEADRMLDMGF P +  I   +P  RQTL
Sbjct: 123 GAHIVVGTPGRIEEHLRKGTLRLDDVTTFVLDEADRMLDMGFQPSLDAIVDYLPAKRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  +++Q +++  +  P R+ V T    + +IE  F A     S+  AL  QLL  
Sbjct: 183 LFSATYPEQIQLIAKRIMHEPIRVTVETAHDDS-SIEQHFYALEDGRSRTEAL--QLLLL 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + ++FCN K+    +   L + GF+  A++G+++Q+ R + L  F   +  ++VA
Sbjct: 240 TYRPNSAVVFCNTKRETQEVADELARMGFAAVALNGDMEQKMRDQTLVRFANNSASILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  VFN+ +    + + HRIGRTGRAG  G AFTL   ++   ++ +E
Sbjct: 300 TDVAARGLDIDDLDAVFNYQLSREIDVHTHRIGRTGRAGSKGHAFTLYTSKERYKVEMLE 359

Query: 362 K 362
           K
Sbjct: 360 K 360


>gi|3986287|dbj|BAA34994.1| DjVLGB [Dugesia japonica]
          Length = 781

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 151/409 (36%), Positives = 232/409 (56%), Gaps = 20/409 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L L P +   +L A Y +PTPIQ   IP +L+  D+   AQTG+GKTA+F++P++ 
Sbjct: 185 NFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIIN 244

Query: 62  IL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            L      ++  ++   P+ LIL PTRELA Q+    +K+  N  L   ++ GG    +Q
Sbjct: 245 HLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQ 304

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT--SL 173
            ++++ G  +L+ TPGR++D   + K+ +   + +V+DEADRMLDMGF P I+ I   S 
Sbjct: 305 IREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESN 364

Query: 174 VP--FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +P    RQTL+FSAT   E+QK++ +FL N   + V    ST+++I+   +  Y    +K
Sbjct: 365 MPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQEII--YMTDVEK 422

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L+ +  +       +IF   KK   +L   L  +G+ V +IHG+  Q  R   LS F
Sbjct: 423 LNYLKNIFNTTAPNTLILIFVETKKGADSLARFLLSKGYPVSSIHGDRSQVEREAALSMF 482

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL-VA 350
           + G   ++VA+ +AARGLDIP+V HV N+D+P+  E Y+HRIGRTGR G HG+A +  V 
Sbjct: 483 RNGQCPILVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRLGNHGRATSFYVD 542

Query: 351 KEDIKHIDAIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHARKN 396
           K +   ID ++ L E       W    LS+L   L++      N+ R N
Sbjct: 543 KNNNIAIDLVDLLKEANQIVPQW----LSALADELKRNSTMGSNNKRHN 587


>gi|15231074|ref|NP_191416.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|75335836|sp|Q9M2F9|RH52_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 52
 gi|6735374|emb|CAB68195.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|15146288|gb|AAK83627.1| AT3g58570/F14P22_160 [Arabidopsis thaliana]
 gi|21593710|gb|AAM65677.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|27363456|gb|AAO11647.1| At3g58570/F14P22_160 [Arabidopsis thaliana]
 gi|332646279|gb|AEE79800.1| DEAD-box ATP-dependent RNA helicase 52 [Arabidopsis thaliana]
          Length = 646

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 146/390 (37%), Positives = 211/390 (54%), Gaps = 23/390 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++ L   +   +    YVKPTP+Q   IP++    D+   AQTG+GKTA+F  P+++ 
Sbjct: 148 FAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISG 207

Query: 63  LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           + K +        R   P  +IL PTRELA Q+ D   K+     + V +  GG P   Q
Sbjct: 208 IMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQ 267

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV- 174
            ++LERG D+L+ TPGR+ D   RG++ +  +  L +DEADRMLDMGF P I+ I   + 
Sbjct: 268 IRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMD 327

Query: 175 ---PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
              P  RQT+LFSAT   E+Q+++ +FL N   + V    S+ + I       +   S K
Sbjct: 328 MPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQ--RVEFVHDSDK 385

Query: 232 CALLQQLLQSQDTMKN------GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            + L  LL +Q    N       ++F   KK   +L + L   GF    IHG+  Q+ R 
Sbjct: 386 RSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQERE 445

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG  G A
Sbjct: 446 VALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLA 505

Query: 346 FTLVAKEDIKHIDAIEKLIEKK----VDWL 371
                  +      + +L+++      DWL
Sbjct: 506 TAFFNDNNTTMAKPLAELMQEANQEVPDWL 535


>gi|304408310|ref|ZP_07389958.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304342779|gb|EFM08625.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 482

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 144/419 (34%), Positives = 232/419 (55%), Gaps = 25/419 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GLS  +  A+    + +PT +Q + IP+VLQ  D+   +QTG+GKTA++ +P+  +
Sbjct: 6   FVQYGLSEDIGRALEGLAFNEPTEVQREVIPVVLQGRDIVVKSQTGSGKTAAYGIPLCEL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +     +   P+ LIL PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VSWEENK---PQVLILTPTRELAVQVKEDLTNIGRFKRVKAAAIYGKQPFHIQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+LDH  +G   ++ +  LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVAGTPGRVLDHIEKGTFPLSKLAYLVIDEADEMLNMGFIDQVEAIIKRLPAERVTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ +++ ++  N++++P  +E+     T + IEH      AQ     A   +LLQS 
Sbjct: 183 FSATLPEDVDQLRRNYMRDPVSVEIQATGLTTDAIEH------AQIKVSEADKLELLQSI 236

Query: 243 DTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++N    IIFC  ++ V  L   L +  +    IHG + Q  R++++  F+ G  + +
Sbjct: 237 TIVENPDSCIIFCRTQEGVNELFRKLARLEYPCDRIHGGMAQEERLEVMGAFRRGQFRYL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI ++ HV N+D P   E Y+HR GRTGRAG+ G+A T V   D   +  
Sbjct: 297 IATDVAARGIDIDNITHVINYDFPLDKEGYVHRTGRTGRAGKRGQAITFVTPSDEGRLAE 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           +E+ I  ++  +        P  E ++ A+    RK N    + T   R KK+ S+Q S
Sbjct: 357 VEQYIGFRIRRIE------EPTAEAVESARDAFERKIN----RQT---RLKKDKSAQVS 402


>gi|288870006|ref|ZP_06112545.2| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM
           13479]
 gi|288868832|gb|EFD01131.1| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM
           13479]
          Length = 561

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 217/369 (58%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L  +++ AV D G+ + +PIQ + IP+ ++  D+ G AQTGTGKTA+F +P+L  
Sbjct: 6   FDELQLDERILRAVADMGFEEASPIQAQAIPVQMEGRDIIGQAQTGTGKTAAFGIPLL-- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
            +K   + +  + + L PTRELA QVAD   +  K  + + V  + GG     Q + L+ 
Sbjct: 64  -QKVDPKSKKLQAIALCPTRELAIQVADEIRRLAKYMHGVKVLPIYGGQDIVKQIRSLKD 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR++DH  R  +  ++I  +V+DEAD ML+MGF+  ++ I S +P  RQT+
Sbjct: 123 GTQIIIGTPGRVMDHMRRKTVKFDHIHTVVMDEADEMLNMGFLEDMETILSQLPEDRQTV 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           +FSATM   +  ++  F + P  ++V     T   +   +  V    +    C LL    
Sbjct: 183 MFSATMPQAIADIAHKFQKEPVTVKVVKKELTVPKVTQYYYEVKPKTKVEVMCRLLDMY- 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  ++FCN KK V  L  +L+ +G+    +HG++ Q  R +++++F+ G   ++
Sbjct: 242 ----APKLSVVFCNTKKGVDELVQALQGRGYFAEGLHGDLKQIQRDRVMNSFRNGRTDIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G AF+ V  +++  +  
Sbjct: 298 VATDVAARGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGREGIAFSFVVGKEVYKLRD 357

Query: 360 IEKLIEKKV 368
           I++  + K+
Sbjct: 358 IQRYCKTKI 366


>gi|326430346|gb|EGD75916.1| ATP-dependent RNA helicase RhlE [Salpingoeca sp. ATCC 50818]
          Length = 2578

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 140/360 (38%), Positives = 203/360 (56%), Gaps = 16/360 (4%)

Query: 11   KVVC-AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
            +V+C A  D GY +PTP+Q   IP  L+  D+ GIA+TG+GKTA+F LP++  L   R R
Sbjct: 2163 EVLCQACEDVGYRRPTPVQEAAIPPALEGKDIVGIAKTGSGKTAAFALPVMHSLINARPR 2222

Query: 70   VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
             R    L++ PTRELA Q+   F+  G    L  ALL+GG+  + Q  +L +   VLI T
Sbjct: 2223 ERRFHALVMAPTRELAQQIEGEFKALGATIGLKTALLVGGLSLQQQQDRLSQNPHVLIAT 2282

Query: 130  PGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
            PGRIL H  R     +NN++ L++DEADRML   F   I  +   +P  R   LFSAT  
Sbjct: 2283 PGRILHHLERTNGFKLNNVKFLILDEADRMLTPEFEREIDQLLGHIPKRRTNFLFSATSN 2342

Query: 189  DELQKVSENFLQNPKRIEVNTPSSTAETI-EHC------FVATYAQYSKKCALLQQLLQS 241
            D+++ +    L+NP  I++     T +T+ +HC      F  TY  +     L +Q LQ+
Sbjct: 2343 DKVKHLMHAVLRNPVHIKIKHKVKTVDTLDQHCVFLPLQFKETYLVW----FLQRQGLQA 2398

Query: 242  QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              ++   IIFC  K+  + L   L K G     +HGN+ Q  R+  L+ FK     ++V 
Sbjct: 2399 DSSV---IIFCETKRATMKLVLMLRKLGLRATCLHGNMSQEKRIGALARFKTHKDNVLVC 2455

Query: 302  SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
            +++ ARGLDI  V  V N+D+P  ++ Y+HR+GRT RAGR G+A T V + D+ +   IE
Sbjct: 2456 TNVGARGLDIQGVELVINYDLPKTSDVYLHRVGRTARAGRSGRAVTFVTQYDVPYFKEIE 2515


>gi|315633344|ref|ZP_07888635.1| ATP-dependent RNA helicase SrmB [Aggregatibacter segnis ATCC 33393]
 gi|315477844|gb|EFU68585.1| ATP-dependent RNA helicase SrmB [Aggregatibacter segnis ATCC 33393]
          Length = 442

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 213/366 (58%), Gaps = 4/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FAD  L+P+++ A+   GY +PT IQ +TIP  ++  DV G A TGTGKTA+F+LP +  
Sbjct: 7   FADFDLAPELLNALQKKGYQRPTAIQQETIPAAMEGFDVLGSAPTGTGKTAAFLLPAIQH 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVA+  E+      L++A + GG+ ++   +   +
Sbjct: 67  LLDYPRRKPGAPRVLILTPTRELAMQVAEQAEELACFTKLSIATITGGVAYQNHGEIFNK 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +          +EIL+ DEADRML MGF    + I++   + +QTL
Sbjct: 127 NQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKISAETRWRKQTL 186

Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  D L+  ++  L  P +I+        + I+  +    +    K  LL + ++
Sbjct: 187 LFSATLEGDLLEDFADRTLNEPVKIDAEPSRRERKKIQQWYYHADSN-EHKFKLLARFIE 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+ +  GI+F  ++++V  L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 246 -QEQVSKGIVFVRRREDVRELAENLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGVVTVLV 304

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D++ARG+DI DV H+ NFD+P  A+ Y+HRIGRT RAG+ G A + V   D + +  I
Sbjct: 305 STDVSARGIDIDDVSHIMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYRLLGKI 364

Query: 361 EKLIEK 366
           ++  ++
Sbjct: 365 KRYTQE 370


>gi|42573778|ref|NP_974985.1| ethylene-responsive DEAD box RNA helicase, putative (RH30)
           [Arabidopsis thaliana]
 gi|108861888|sp|Q8W4R3|RH30_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 30
 gi|110741550|dbj|BAE98724.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|332010323|gb|AED97706.1| DEAD-box ATP-dependent RNA helicase 30 [Arabidopsis thaliana]
          Length = 591

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 143/384 (37%), Positives = 215/384 (55%), Gaps = 15/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D      ++ A+   G+ +PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP L  
Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 226

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +    A+ R+     P  LIL PTRELA Q+ +   K+G    +    + GG P   Q +
Sbjct: 227 VS---AQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIR 283

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   
Sbjct: 284 DLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPD 343

Query: 178 RQTLLFSATMTDELQKVSENFLQNP-KRIEVNTPSSTAETIEHC--FVATYAQYSKKCAL 234
           RQTLL+SAT   E++ ++  FL++P K I  +T     ++I      V T  +Y++   L
Sbjct: 344 RQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTL 403

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L+QL+     +    IF   K+    +   L   G+   AIHG+  Q  R ++L+ FK G
Sbjct: 404 LKQLMDGSKIL----IFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSG 459

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +M A+D+AARGLD+ D+  V N+D PN  E+YIHRIGRTGRAG  G AFT    ++ 
Sbjct: 460 RSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNA 519

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL 378
           K    + K++++    +   LS+L
Sbjct: 520 KFARELVKILQEAGQVVPPTLSAL 543


>gi|289671093|ref|ZP_06492168.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 446

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 138/375 (36%), Positives = 225/375 (60%), Gaps = 10/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L P ++  +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++
Sbjct: 9   LTFSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVTVV 68

Query: 61  TILEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L    A    +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q 
Sbjct: 69  NRLLNRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQR 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L++G DV+I TPGR++D+  + K++ ++  EI V+DEADRM D+GFI  I+ +   +P
Sbjct: 129 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
              TRQTLLFSAT++  + +++   +  P+++ V T + TA  +       +    +K  
Sbjct: 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIY--FPSDEEKQT 246

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  LL   +  +  ++F N K  V  +  +LE+ G+ V  + G++ Q+ R  +L+ F++
Sbjct: 247 LLLGLLSRSEGART-MVFVNTKAFVERVARALERHGYRVGVLSGDVPQKKRESLLNRFQK 305

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +  
Sbjct: 306 GQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERY 365

Query: 354 IKHIDAIEKLIEKKV 368
              +  IE  IE+K+
Sbjct: 366 AISLPDIEAYIEQKI 380


>gi|307721994|ref|YP_003893134.1| ATP-dependent RNA helicase DbpA [Sulfurimonas autotrophica DSM
           16294]
 gi|306980087|gb|ADN10122.1| ATP-dependent RNA helicase DbpA [Sulfurimonas autotrophica DSM
           16294]
          Length = 452

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 140/363 (38%), Positives = 217/363 (59%), Gaps = 10/363 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+FA L LSP+++  +   GY + TPIQ +++P +L+  D+   A+TG+GKTA+F + +L
Sbjct: 1   MNFATLPLSPQMLQTIESLGYKEMTPIQAQSLPSILEGRDIIAQAKTGSGKTAAFGIGLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
             L   + RV+   +L+L PTRELA QVA    +  +  +N+ + +L GG  F  Q   L
Sbjct: 61  HHLNVKKFRVQ---SLVLCPTRELADQVAKELRRLARFQHNIKILMLSGGESFGRQLGSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              A +++ TPGR+L H N+  L ++N+  LV DEADRMLDMGFI  I+++ + VP  RQ
Sbjct: 118 AHQAHIIVGTPGRVLKHLNKESLELSNLNTLVFDEADRMLDMGFIEEIESVLAFVPKERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  DE+ ++S+    N   ++     + A+ +++  V  + + + K   L ++L
Sbjct: 178 TLLFSATYDDEILQISKRIQNNALHVK-----TAAQEVQNKIVQEFYETNDKVDTLIKIL 232

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +N I+F N K     L  SL +      AIHG+++Q  R  +L  F   +  ++
Sbjct: 233 ANYKP-ENVIVFTNTKLEAKELAESLVQNKIDALAIHGDLEQYERNDVLVQFANKSCPVL 291

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI D+  V N+D+P+  E Y HRIGRTGRAG  G A TL  + + + I+ 
Sbjct: 292 VATDVAARGLDIKDLSMVVNYDLPHSMETYTHRIGRTGRAGAEGIAVTLYNEYEAQKIEP 351

Query: 360 IEK 362
            E+
Sbjct: 352 YEE 354


>gi|91788228|ref|YP_549180.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
 gi|91697453|gb|ABE44282.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
          Length = 422

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 145/369 (39%), Positives = 204/369 (55%), Gaps = 10/369 (2%)

Query: 1   MDFADLGLSPKVVCAVL----DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFV 56
           M F+ LG SP ++ A L    D GY  PT IQ + IP +L   DV G AQTG+GKTA+F 
Sbjct: 1   MPFSSLGFSPALLPAFLRAIGDKGYRAPTAIQSQAIPAILLGRDVVGSAQTGSGKTAAFA 60

Query: 57  LPMLTILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFE 113
           LPML  L         P R LIL PTRELAAQV +    + K     + VA++ GG+   
Sbjct: 61  LPMLQQLANAPTGTPRPTRGLILVPTRELAAQVGEAIAGFAKYLPQRVKVAVVFGGVSIN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  GAD+++ TPGR+LD      L ++ +  LV+DEADR+LD+GF   +  I  L
Sbjct: 121 PQMMNLRGGADIVVATPGRLLDLLEHNALKISEVSTLVLDEADRLLDLGFGEELGRILEL 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ L FSAT    ++ ++E+ L +P RIEV     T   I    +   A  S++  
Sbjct: 181 LPPRRQNLFFSATFPPAIEVLAESMLHDPLRIEVQAVPETKPDIAQRAIQVDA--SRRTQ 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL+ L+Q++   +  ++F   K     +   L K        HG + Q  R ++L +F+ 
Sbjct: 239 LLRHLVQTEK-WERALVFVATKHAAEIVADKLRKVHIEAEPFHGELSQGKRTQVLQDFRI 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             +Q++VA+D+AARG+DI  +  V N+D+P  A +Y HRIGRTGRAG  G A + V+   
Sbjct: 298 KAVQVVVATDVAARGIDIAQMPVVVNYDLPRSAVDYTHRIGRTGRAGESGLAVSFVSAGT 357

Query: 354 IKHIDAIEK 362
             H   IEK
Sbjct: 358 EAHFKLIEK 366


>gi|326928709|ref|XP_003210518.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Meleagris gallopavo]
          Length = 1027

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 144/427 (33%), Positives = 236/427 (55%), Gaps = 15/427 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ A+   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 370 WVQCGISMKILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRH 429

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 430 IMDQRALEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 485

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 486 AELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 545

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           V   RQT++FSAT    ++ ++   L  P  ++V   S     +E   V    + +K   
Sbjct: 546 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQ-HVIVIEEENKFLK 604

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL+ L   Q+   + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK 
Sbjct: 605 LLELLGHYQEK-GSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKN 663

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++ 
Sbjct: 664 GTCKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQ 723

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            ++   I K +E   + +  DL  L    ++   A+    +K++    K   FD  ++  
Sbjct: 724 ARYAGDIIKALELSGNPIPADLEKLWADFKEQQKAEGKLIKKSSGFSGKGFKFDETEQAL 783

Query: 414 SSQKSHI 420
           ++++  +
Sbjct: 784 ANERKKL 790


>gi|227494914|ref|ZP_03925230.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
 gi|226831366|gb|EEH63749.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
          Length = 528

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 214/374 (57%), Gaps = 16/374 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD G++ ++  A+   G   P PIQ  T+P+ L   D+ G A+TGTGKT  F LP L  
Sbjct: 44  FADFGINTEICDALSAKGITYPFPIQALTLPVALAGRDIIGQAKTGTGKTLGFGLPTLMK 103

Query: 63  LEKGRARVRM---------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
           +  G A  +          P+ +++ PTREL  QVA +     K  ++ +  + GG  FE
Sbjct: 104 VH-GPASAKYATEVHYQGHPQAMVIVPTRELCKQVAADLRAAAKQTSVRITEIYGGAAFE 162

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L +G D+++ TPGR++D   R  L ++ +  +V+DEAD MLD+GF+P ++ + S 
Sbjct: 163 PQIDALTKGTDLIVGTPGRLIDLLKRKVLQLHGVNTVVLDEADEMLDLGFLPDVEILLSR 222

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTAETIEHCFVATYAQYSK 230
           VP TRQT+LFSATM  E+  ++  +++ P  I   E +   +T +T++      +A    
Sbjct: 223 VPQTRQTMLFSATMPGEIVALARRYMKQPTHIRAQEADDQGATVKTVKQVIYRCHAL--N 280

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K  ++ ++LQ+++     +IF   K+    L   L  +GF+V ++HG++ Q +R + +  
Sbjct: 281 KIEVVARILQARE-RGLAVIFTKTKRTAATLSEDLSARGFAVASLHGDLGQGAREQAMRA 339

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G + ++VA+D+AARG+D+ DV HV N+  P   + Y+HRIGRTGRAG  G A T V 
Sbjct: 340 FRSGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYLHRIGRTGRAGASGTAVTFVD 399

Query: 351 KEDIKHIDAIEKLI 364
            +D+     I K +
Sbjct: 400 WDDVPRWGLISKAL 413


>gi|319775651|ref|YP_004138139.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
 gi|317450242|emb|CBY86458.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
          Length = 444

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 136/383 (35%), Positives = 214/383 (55%), Gaps = 6/383 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP L  
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++        
Sbjct: 66  LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QTL
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  EL    +E  L +P +++        + I   +    +    K  LL + ++
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHPDSN-EHKIKLLARFIE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++  + GI+F  ++++   L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 245 TEEVTR-GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381
           ++  E+  K   L G      PP
Sbjct: 364 KRYTEEILKARILAGLEPRTKPP 386


>gi|84468282|dbj|BAE71224.1| putative replication protein A1 [Trifolium pratense]
          Length = 440

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 142/372 (38%), Positives = 218/372 (58%), Gaps = 15/372 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL  ++V A  + G+  P  IQI+ IPL LQ  DV G+AQTG+GKT +F LP+L  
Sbjct: 11  FKDLGLPEELVEACDNLGWKTPLKIQIEAIPLALQGKDVIGLAQTGSGKTGAFALPIL-- 68

Query: 63  LEKGRARVRMPR-----TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                A ++ PR       +L PTRELA Q+++ FE  G    +  A+L+GGI    Q+ 
Sbjct: 69  ----HALLQAPRPNHFFACVLSPTRELAIQISEQFEALGSGIGVKSAVLVGGIDMVQQSI 124

Query: 118 KLERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K+ +   +++ TPGR+LDH    K   ++ ++ LV+DEADR+L+  F   +  I  ++P 
Sbjct: 125 KIAKHPHIIVGTPGRVLDHLKNTKGFSLSKLKYLVLDEADRLLNEDFEESLNEILGMIPR 184

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R+T LFSATMT +++K+    L+NP +IE +T  ST +T++  +    A+  K C L+ 
Sbjct: 185 ERRTFLFSATMTKKVEKLQRVCLRNPVKIEASTKYSTVDTLKQQYRFLPAK-RKDCYLVY 243

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L +   +    ++F         L   L   G     I+G++ Q  R+  L+ FK G  
Sbjct: 244 ILTEMAGS--TSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDC 301

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++ +D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR G A +LV + +++ 
Sbjct: 302 NILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEW 361

Query: 357 IDAIEKLIEKKV 368
              IEKLI KK+
Sbjct: 362 YIQIEKLIGKKL 373


>gi|329122297|ref|ZP_08250885.1| ATP-dependent RNA helicase SrmB [Haemophilus aegyptius ATCC 11116]
 gi|327473858|gb|EGF19275.1| ATP-dependent RNA helicase SrmB [Haemophilus aegyptius ATCC 11116]
          Length = 444

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 209/366 (57%), Gaps = 4/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP L  
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++        
Sbjct: 66  LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QTL
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  EL    +E  L +P +++        + I   +    +    K  LL + ++
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++  + GI+F  ++++   L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 245 TEEVTR-GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK 366
           ++  E+
Sbjct: 364 KRYTEE 369


>gi|90581476|ref|ZP_01237270.1| ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90437337|gb|EAS62534.1| ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 437

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 138/372 (37%), Positives = 217/372 (58%), Gaps = 9/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FA+LGL+P V+  + D G+   TPIQ   +P++L  HD+ G AQTGTGKT +F+      
Sbjct: 11  FAELGLNPLVLKGLDDKGFHNCTPIQALALPVMLTGHDIAGQAQTGTGKTIAFLTATFNH 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L        +   PR +I+ PTRELA Q+ ++      +  L   L  GG P+E Q   
Sbjct: 71  LLETAAPAHRKTNQPRAIIMAPTRELALQIYNDASSLIASTGLKAGLAYGGEPYEKQKAV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-- 176
           L+ G D+LI T GRI+D + +  + + +I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LDEGVDILIGTCGRIIDFYKQRVIDLASIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPS 190

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R +LLFSAT++  +++++   + +P+ + V     T   I+      Y    +K  LLQ
Sbjct: 191 ERLSLLFSATLSYRVKELAFEHMNSPESVVVEPEQKTGHRIQEELF--YPSNQEKMRLLQ 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ ++  +  IIF N K    ++   L   G  V  + G++ Q+ R +IL  F +G +
Sbjct: 249 TLIE-EEWPERAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVPQKKRERILDQFTKGDV 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL IP V HVFN+D+P+ AE+Y+HRIGRTGRAG  G + +   +E   +
Sbjct: 308 DILVATDVAARGLHIPAVTHVFNYDLPDDAEDYVHRIGRTGRAGLSGHSISFACEEYAIN 367

Query: 357 IDAIEKLIEKKV 368
           + AIE  IE  +
Sbjct: 368 LTAIETYIEHGI 379


>gi|167525138|ref|XP_001746904.1| p68DDX5 RNA helicase [Monosiga brevicollis MX1]
 gi|163774684|gb|EDQ88311.1| p68DDX5 RNA helicase [Monosiga brevicollis MX1]
          Length = 487

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 134/363 (36%), Positives = 210/363 (57%), Gaps = 12/363 (3%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEK 65
           V+  ++  G+  PTPIQ +  P+ L   ++ G+A TG+GKT SF+LP +       +L  
Sbjct: 72  VMDVLMREGFSTPTPIQAQGWPMALAGRNMVGVADTGSGKTLSFILPAIVHINNQPLLRP 131

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
           G      P  L+L PTRELA Q+A+   KYG +  +    + GG P   Q   LERG ++
Sbjct: 132 GDG----PIALVLAPTRELAQQIAEVAHKYGSSSRIKTTCVFGGAPKRGQAMDLERGVEL 187

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           LI TPGR++D  +  K  +     LV+DEADRMLDMGF P ++ I S +   RQTL++SA
Sbjct: 188 LIGTPGRLIDFLDTRKTNLRRCTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQTLMWSA 247

Query: 186 TMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T   E+Q+++  FL Q+  R+++     +A       V     Y K+  L + L +    
Sbjct: 248 TWPKEVQQLAYEFLGQDVIRVQIGAIGLSANHRIKQHVMIMQDYDKQRELFRLLDEIMRQ 307

Query: 245 MKN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
            +N  IIF   K+NV +L  +L ++GF    +HG+  QR R  +L+ F++G   +++A+D
Sbjct: 308 KENKTIIFAETKRNVDDLTRNLRREGFPAMCMHGDKQQRERDTVLAEFRDGRHPILIATD 367

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +A+RGLD+ D+ +V NFD PN +E+Y+HRIGRT R G  G A+T  + ++ +    +  +
Sbjct: 368 VASRGLDVKDIKYVINFDYPNNSEDYVHRIGRTARGGGEGTAYTFFSSKNARQAKDLVSV 427

Query: 364 IEK 366
           +E+
Sbjct: 428 LEE 430


>gi|157962823|ref|YP_001502857.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157847823|gb|ABV88322.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 445

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 137/374 (36%), Positives = 212/374 (56%), Gaps = 14/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F    L PK++ AV   GY + T +Q + +P+ ++  D+   AQTGTGKTA+F LP+L
Sbjct: 1   MNFDAFDLHPKILDAVSARGYQQLTQVQSQVLPVAMEGKDIMACAQTGTGKTAAFALPLL 60

Query: 61  TIL----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
             L          E         + L+L PTRELA QVADN   Y +        + GG 
Sbjct: 61  NTLIKEYSLFTDSEAELTHQSSVKVLVLTPTRELAIQVADNITAYAQFLPFKTTAVYGGS 120

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q K L+ G D+L+ TPGR+ DH  +  L ++N+  LV+DEADRMLD+GF+  I+ +
Sbjct: 121 NMNPQRKALQAGVDILVATPGRLFDHIGQFGLDLSNVTHLVVDEADRMLDLGFVRDIEKV 180

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
             LV    QTL FSAT +D ++ ++E  L  P+ I V T ++ +   +  ++       +
Sbjct: 181 KKLVAPAHQTLFFSATYSDAVKTLAEKMLIAPEWINVATSATASLITQEIYL---VDTRR 237

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K  LL +L+  ++  +  ++F + +++  +L   L+  G      HG   Q +R + L  
Sbjct: 238 KAELLSELI-GRNNWQQVLVFVSTRESAEHLHAELKLDGVKNAVFHGEKTQGARNRALEE 296

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G +++MVA+D+AARGLDI  +  V N ++P  AE+Y+HR+GRTGRAG  G+A + V+
Sbjct: 297 FKSGKLRVMVATDVAARGLDIEALPLVINLELPFAAEDYVHRVGRTGRAGLAGRAISFVS 356

Query: 351 KEDIKHIDAIEKLI 364
            +D + +  IE LI
Sbjct: 357 PQDREMMQEIEVLI 370


>gi|52842336|ref|YP_096135.1| ATP-dependent RNA helicase DbpA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629447|gb|AAU28188.1| ATP dependent RNA helicase DbpA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 468

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 139/373 (37%), Positives = 224/373 (60%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L  +++ ++  + Y   TPIQ++++P++L+  D+   A+TG+GKTA+F L +L
Sbjct: 11  LSFSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDMIAQAKTGSGKTAAFALCLL 70

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L   +    + + L+L PTRELA QV+    +      N+ +  L GGIP + Q   L
Sbjct: 71  NNL---KISFFVVQALVLCPTRELAEQVSQAIRRLACLMPNVKIINLSGGIPMQPQLDSL 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA +++ TPGRIL H     L ++ ++ LV+DEADRMLDMGF   I+NI S+ P  RQ
Sbjct: 128 RHGAHIIVGTPGRILKHLKNASLDLSQVKALVLDEADRMLDMGFFDDIKNIISVCPKQRQ 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +E++++S+ F+++PK + V TP    +  +H +    +++++K  LL+ LL
Sbjct: 188 TLLFSATYPEEIKRLSKQFMKDPKEVHVVTPPEEIDIEQHFY--EVSRHAQKFPLLKSLL 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                + + +IFCN K+  + +   L  +GFS  A++G+++Q  R   +  F   +  ++
Sbjct: 246 LHYQPV-SVLIFCNTKQQTIEVTDQLINEGFSAIALNGDMEQIERDLAVLRFANQSCSIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++  V NFD+    + +IHRIGRTGRAG  G A ++V   D + I A
Sbjct: 305 VATDVAARGLDIKELSAVINFDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPADAQRICA 364

Query: 360 IEKLIEKKVDWLN 372
           IE      + W N
Sbjct: 365 IEDNYPLPIHWGN 377


>gi|254578822|ref|XP_002495397.1| ZYRO0B10318p [Zygosaccharomyces rouxii]
 gi|238938287|emb|CAR26464.1| ZYRO0B10318p [Zygosaccharomyces rouxii]
          Length = 750

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 137/354 (38%), Positives = 212/354 (59%), Gaps = 4/354 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L LS  V+ A+ D GY  P+PIQ  TIP+ L   D+   A TG+GKTA+F++P++ 
Sbjct: 238 NFNSLSLSRPVLKALGDLGYATPSPIQGATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 297

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L    A+V   R ++L PTRELA QVAD  +K GK  N LT  + +GG+    Q + L+
Sbjct: 298 RLIYKPAKVASTRVIVLAPTRELAIQVADVGKKLGKYVNGLTFGIAVGGLNLRQQEQILK 357

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D++I TPGR +DH  N     ++++E+LVIDEADRML+ GF   I  I  L+P  RQ
Sbjct: 358 TRPDIVIATPGRFIDHIRNSSSFNVDSVEVLVIDEADRMLEEGFQDEINEIMHLLPSKRQ 417

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  +++++    L+ P R+  + P      ++  FV    +   K + L  L+
Sbjct: 418 TMLFSATMNSKIKQLVSLSLKRPVRVMTDPPQQAVSKLQQEFVRIRKRDHLKPSTLFYLI 477

Query: 240 QSQD--TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  D    K  ++F ++K+ V  L   L   G +V  +HG+++Q  R++ ++ FK   + 
Sbjct: 478 KKLDGAAQKRMVVFVSKKEMVHRLRIILGLLGMAVAELHGSLNQEQRLQSINKFKSLEVP 537

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +++ +DLA+RGLDIP +  V N+D+P   E Y+HR+GRT RAGR G++ + V +
Sbjct: 538 VLICTDLASRGLDIPKIEVVINYDMPKSFEIYLHRVGRTARAGREGRSVSFVGE 591


>gi|162451888|ref|YP_001614255.1| hypothetical protein sce3615 [Sorangium cellulosum 'So ce 56']
 gi|161162470|emb|CAN93775.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 812

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 134/353 (37%), Positives = 214/353 (60%), Gaps = 8/353 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  L LS ++   + + GYV PTP+Q+     V +  D    A+TGTGKTA+F LP++  
Sbjct: 30  FDVLPLSSELRETLAEIGYVHPTPVQLAVWEPVTRGRDAVVQARTGTGKTAAFGLPIVDH 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++  A+ ++   L L PTRELA QV+   E+ GK   + V  + GG P + Q   L  
Sbjct: 90  AVKRSLAQAQV---LALCPTRELALQVSAEVERLGKRKGIKVVAVYGGAPMQRQIDALAA 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR+LDH  RG ++  +I +LV+DE D ML MGF   +  I + +P  RQTL
Sbjct: 147 GAQVIVGTPGRVLDHLRRGTIVAKHIRLLVLDECDEMLSMGFERELTAILAELPPERQTL 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++++++ + L++P+ I ++  +  A  I+H     Y     K   L ++++ 
Sbjct: 207 LFSATLPPDIERIARSKLRSPEFITLSGDAVGALQIQHYV---YLITGDKLTSLVRIIEV 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++  +N +IFCN K     +  +L++QG+    ++G++ Q  R K++S  +EG ++ +VA
Sbjct: 264 ENP-ENAVIFCNTKDETEAVAGALKRQGYDADWLNGDLPQSDREKVMSATREGRLRFLVA 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           +D+AARG+DI  + HV N+D P  AE Y+HR GRTGRAGR G A  L+  +D+
Sbjct: 323 TDVAARGIDISHLTHVINYDFPQDAEAYVHRTGRTGRAGRTGTAIALITPQDV 375


>gi|320533118|ref|ZP_08033850.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134690|gb|EFW26906.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 471

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 140/411 (34%), Positives = 222/411 (54%), Gaps = 21/411 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  + P++  A+   G   P PIQ  T+P+ L+  D+ G A+TGTGKT  F +P+L  
Sbjct: 72  FADFDVEPEICEALSAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMD 131

Query: 63  L----EKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                E+G         P+ LI+ PTRELA QVA+          + +  + GG  +E Q
Sbjct: 132 TLGPGEEGWDEDPASGSPQALIILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEPQ 191

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + LERGA+V++ TPGR++D   RG L + ++  +V+DEAD MLD+GF+P ++ I +   
Sbjct: 192 IEDLERGAEVVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILARTR 251

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234
             R T+LFSATM   +  ++  ++  P  I    P     T++      Y  +S  K  +
Sbjct: 252 TDRHTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQTVQQVVYRTHSMNKVEV 311

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + ++LQ++   +  IIF   K+    +   L  +GF+  A+HG++ Q +R + L  F+  
Sbjct: 312 VSRILQAEGRGRT-IIFARTKRTAARVADDLRARGFATAALHGDLGQGAREQALRAFRNS 370

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+  P   + Y+HRIGRTGRAG  G A T V  +D+
Sbjct: 371 KVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFVDWDDV 430

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
                I K +   ++           P+E    ++H  +  +  IP+K TG
Sbjct: 431 PRWRIIAKALGLPIE----------EPVETYHTSEHLFS--DLSIPEKVTG 469


>gi|89073869|ref|ZP_01160376.1| ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89050404|gb|EAR55905.1| ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 437

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 138/372 (37%), Positives = 217/372 (58%), Gaps = 9/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FA+LGL+P V+  + D G+   TPIQ   +P++L  HD+ G AQTGTGKT +F+      
Sbjct: 11  FAELGLNPLVLKGLDDKGFHNCTPIQALALPVMLTGHDIAGQAQTGTGKTIAFLTATFNH 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L        +   PR +I+ PTRELA Q+ ++      +  L   L  GG P+E Q   
Sbjct: 71  LLETAAPAHRKTNQPRAIIMAPTRELAIQIYNDASSLIASTGLKAGLAYGGEPYEKQKAV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-- 176
           L+ G D+LI T GRI+D + +  + + +I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LDEGVDILIGTCGRIIDFYKQRVIDLASIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPN 190

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R +LLFSAT++  +++++   + +P+ + V     T   I+      Y    +K  LLQ
Sbjct: 191 ERLSLLFSATLSYRVKELAFEHMNSPESVVVEPEQKTGHRIQEELF--YPSNQEKMRLLQ 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ ++  +  IIF N K    ++   L   G  V  + G++ Q+ R +IL  F +G +
Sbjct: 249 TLIE-EEWPERAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVPQKKRERILDQFTKGDV 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL IP V HVFN+D+P+ AE+Y+HRIGRTGRAG  G + +   +E   +
Sbjct: 308 DILVATDVAARGLHIPAVTHVFNYDLPDDAEDYVHRIGRTGRAGLSGHSISFACEEYAIN 367

Query: 357 IDAIEKLIEKKV 368
           + AIE  IE  +
Sbjct: 368 LTAIEAYIEHGI 379


>gi|333000436|gb|EGK20018.1| ATP-dependent RNA helicase srmB [Shigella flexneri VA-6]
          Length = 444

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 141/368 (38%), Positives = 213/368 (57%), Gaps = 4/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  
Sbjct: 6   FSELELDKSLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QTL
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185

Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  D +Q  +E  L++P  +  N PS+      H +         K ALL  LL+
Sbjct: 186 LFSATLEGDAIQDFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLK 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  ++ I+F  +++ V  L + L + G + C + G + Q  R + +    EG + ++V
Sbjct: 245 QPEATRS-IVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DIPDV HVFNFD+P   + Y+HRIGRT RAGR G A +LV   D   +  +
Sbjct: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363

Query: 361 EKLIEKKV 368
            + IE+ +
Sbjct: 364 GRYIEEPI 371


>gi|315055611|ref|XP_003177180.1| ATP-dependent rRNA helicase RRP3 [Arthroderma gypseum CBS 118893]
 gi|311339026|gb|EFQ98228.1| ATP-dependent rRNA helicase RRP3 [Arthroderma gypseum CBS 118893]
          Length = 474

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 220/369 (59%), Gaps = 10/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DLG+   +  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 51  FKDLGIIDSLCDACTSLGYKAPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQA 110

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++EK +        L+L PTRELA Q++++FE  G   ++  A+++GG+   +Q+  L +
Sbjct: 111 LMEKPQPYF----GLVLAPTRELAVQISESFEALGSLISVRCAVIVGGMDMISQSISLGK 166

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+LDH    K   + N++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 167 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRT 226

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LFSAT++ +++ +    L NP R+ +++    T  T+   ++    +Y K   L+  L 
Sbjct: 227 YLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKY-KDIYLVHIL- 284

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  IIF         L   L   GF    +HG + Q +R+  L  F+ G+  ++
Sbjct: 285 -NEFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDIL 343

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V NFD+P+ ++ YIHR+GRT RAG+ G+A ++V + +++    
Sbjct: 344 VATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQR 403

Query: 360 IEKLIEKKV 368
           IE  + K++
Sbjct: 404 IEAALGKQL 412


>gi|149639330|ref|XP_001510706.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46,
           partial [Ornithorhynchus anatinus]
          Length = 974

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 143/427 (33%), Positives = 235/427 (55%), Gaps = 15/427 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 317 WVQCGISMKILNSLRKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 376

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 377 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKALGLRVVCVYGGTGISEQI 432

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 433 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 492

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           V   RQT++FSAT    ++ ++   L  P  ++V   S     +E   +    + +K   
Sbjct: 493 VRPDRQTVMFSATFPRAMEALARRILNKPVEVQVGGRSVVCSDVEQQVIVIEEE-NKFLK 551

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL+ L   Q++  + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK 
Sbjct: 552 LLELLGHYQES-GSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKS 610

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G AFT + ++ 
Sbjct: 611 GTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGHAFTFITEDQ 670

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            ++   I K +E     +  DL  L    +    A+    +K++    K   FD  ++  
Sbjct: 671 ARYAGDIIKALELSGTAVPADLEKLWSDFKDQQKAEGKTIKKSSGFSGKGFKFDETEQAL 730

Query: 414 SSQKSHI 420
           ++++  +
Sbjct: 731 ANERKKL 737


>gi|301754403|ref|XP_002913034.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
           [Ailuropoda melanoleuca]
          Length = 764

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 159/466 (34%), Positives = 247/466 (53%), Gaps = 25/466 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 186 LSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 245

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++  +  N+T  L +GG+  ++Q   L 
Sbjct: 246 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALR 305

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 306 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 365

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 366 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 425

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 426 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 485

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K +  
Sbjct: 486 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 545

Query: 360 IEKL-----------------IEKKVDWLNGDLSS-LNPPLEKIDIAQHNHARKNNPIPQ 401
           I K                     K++ +  D+ + L    E+ ++ Q + A+ N     
Sbjct: 546 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEL-QQSEAQINTAKRL 604

Query: 402 KSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
              G  +   N+  ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 605 LEKG--KEASNHEPERSWFQTKEERKKEKIAKALQEFD---LALRG 645


>gi|294814858|ref|ZP_06773501.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|326443235|ref|ZP_08217969.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|294327457|gb|EFG09100.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 819

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 132/348 (37%), Positives = 203/348 (58%), Gaps = 12/348 (3%)

Query: 31  TIPLVLQRHDVCGIAQTGTGKTASFVLPML---TI---LEKGRAR----VRMPRTLILEP 80
           T+P+ L   DV G A+TGTGKT  F LP+L   T+   +E GRAR       P+ L++ P
Sbjct: 2   TLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRARPDQLSEAPQALVVVP 61

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TREL  QV ++    GK  N+ V  + GG  +E Q + L +G DV++ TPGR+LD   + 
Sbjct: 62  TRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALRKGVDVIVGTPGRLLDLAGQK 121

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200
           KL ++ +  LV+DEAD MLD+GF+P ++ I  L+P  RQT+LFSATM   +  ++  ++ 
Sbjct: 122 KLDLSQVRALVLDEADEMLDLGFLPDVEKIIQLLPAKRQTMLFSATMPGAVIGLARRYMS 181

Query: 201 NPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
            P  I    P     T+ +     Y  +S  K  ++ ++LQ++      +IFC  K+   
Sbjct: 182 QPTHIRATAPDDEGATVANITQRVYRAHSMDKPEMVSRILQAEG-RGLAMIFCRTKRTAA 240

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
           ++   L ++GF+  A+HG++ Q +R + L  F+ G + ++V +D+AARG+D+  V HV N
Sbjct: 241 DIADQLARRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVIN 300

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           +  P   + Y+HR+GRTGRAG  G A TLV  +DI     I K ++ K
Sbjct: 301 YQSPEDEKTYLHRVGRTGRAGASGTAVTLVDWDDIPRWQLINKALDLK 348


>gi|281351106|gb|EFB26690.1| hypothetical protein PANDA_000812 [Ailuropoda melanoleuca]
          Length = 703

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 159/466 (34%), Positives = 247/466 (53%), Gaps = 25/466 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 155 LSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 214

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++  +  N+T  L +GG+  ++Q   L 
Sbjct: 215 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALR 274

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 275 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 334

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 335 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 394

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 395 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 454

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K +  
Sbjct: 455 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 514

Query: 360 IEKL-----------------IEKKVDWLNGDLSS-LNPPLEKIDIAQHNHARKNNPIPQ 401
           I K                     K++ +  D+ + L    E+ ++ Q + A+ N     
Sbjct: 515 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEL-QQSEAQINTAKRL 573

Query: 402 KSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
              G  +   N+  ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 574 LEKG--KEASNHEPERSWFQTKEERKKEKIAKALQEFD---LALRG 614


>gi|255657870|ref|ZP_05403279.1| ATP-dependent RNA helicase DeaD [Mitsuokella multacida DSM 20544]
 gi|260850060|gb|EEX70067.1| ATP-dependent RNA helicase DeaD [Mitsuokella multacida DSM 20544]
          Length = 441

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 217/369 (58%), Gaps = 12/369 (3%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+ P  +C VL + G  + TP+Q K +PLV   HD    AQTGTGKT +F+LP   
Sbjct: 4   FQELGIRP-ALCDVLRSHGIKEATPVQEKAMPLVRAGHDCIVKAQTGTGKTLAFLLP--- 59

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I+EK + +  + + L++ PTRELA Q+A   +      +++  ++ GG   E Q +KL R
Sbjct: 60  IIEKIKPQAAVTQALVITPTRELAIQIAKVAQSLSAAADISSLVIFGGQDIERQKQKLRR 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH  R  + ++ +  +V+DEAD M+ +GFI  ++ +       RQ +
Sbjct: 120 HPQLIIGTPGRLLDHLRRQTIDLSQVNKVVLDEADEMMRLGFIEDVETLLEATAADRQLM 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQYSKKCALLQQLL 239
           LFSATM D ++ +S  ++  P+ +E+ +   T + I+   + T    +  K C ++    
Sbjct: 180 LFSATMPDRVKALSARYMTAPQNLEIKSEHVTLDAIDQVIIDTREETKIDKLCEII---- 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q+     ++FC+ K+    +  +L  +G+ V  +HG++ Q  R  +L  F++  +Q++
Sbjct: 236 -NQEQPYLAMVFCHTKQRAHMVTMALAARGYLVDELHGDLSQVQRTLVLKRFRKAELQIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLDI  V HVFN+D+P+ AE+YIHRIGRTGRAG  GKA T V       +  
Sbjct: 295 CATDIAARGLDIEGVTHVFNYDIPHDAESYIHRIGRTGRAGERGKAITFVNARQYDLLRR 354

Query: 360 IEKLIEKKV 368
           IE  I+ ++
Sbjct: 355 IEGGIKDRI 363


>gi|134113286|ref|XP_774667.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257311|gb|EAL20020.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 559

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 140/376 (37%), Positives = 209/376 (55%), Gaps = 15/376 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    ++  +   G+  P+ IQ +  P+ L   D+  IA+TG+GKT SF LP +  
Sbjct: 131 FEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLPAMVH 190

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  LIL PTRELA Q+     K+G++  +    + GG P   Q 
Sbjct: 191 INAQPLLAPGDG----PIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQI 246

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+RG ++ + TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 247 RDLQRGVEICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRP 306

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE--TIEHCFVATYAQYSKKCAL 234
            RQTLLFSAT   E+Q+++ +FL +  ++ + +   TA     +H  V T   + K+  L
Sbjct: 307 DRQTLLFSATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCT--DFDKRSKL 364

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L +        +IF   K+   +L   L   G+   AIHG+  Q  R  +L+ FK G
Sbjct: 365 LSHLEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSG 424

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +M+A+D+A+RGLD+ D+G+V N+D PN  E+YIHRIGRTGRAGR G ++T    ++ 
Sbjct: 425 RSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNS 484

Query: 355 KHI-DAIEKLIEKKVD 369
           K   + ++ L E K D
Sbjct: 485 KAARELVQILRESKAD 500


>gi|134113284|ref|XP_774668.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257312|gb|EAL20021.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 546

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 140/376 (37%), Positives = 209/376 (55%), Gaps = 15/376 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    ++  +   G+  P+ IQ +  P+ L   D+  IA+TG+GKT SF LP +  
Sbjct: 118 FEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLPAMVH 177

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  LIL PTRELA Q+     K+G++  +    + GG P   Q 
Sbjct: 178 INAQPLLAPGDG----PIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQI 233

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+RG ++ + TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 234 RDLQRGVEICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRP 293

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE--TIEHCFVATYAQYSKKCAL 234
            RQTLLFSAT   E+Q+++ +FL +  ++ + +   TA     +H  V T   + K+  L
Sbjct: 294 DRQTLLFSATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCT--DFDKRSKL 351

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L +        +IF   K+   +L   L   G+   AIHG+  Q  R  +L+ FK G
Sbjct: 352 LSHLEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSG 411

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +M+A+D+A+RGLD+ D+G+V N+D PN  E+YIHRIGRTGRAGR G ++T    ++ 
Sbjct: 412 RSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNS 471

Query: 355 KHI-DAIEKLIEKKVD 369
           K   + ++ L E K D
Sbjct: 472 KAARELVQILRESKAD 487


>gi|148359632|ref|YP_001250839.1| ATP dependent RNA helicase DbpA [Legionella pneumophila str. Corby]
 gi|148281405|gb|ABQ55493.1| ATP dependent RNA helicase DbpA [Legionella pneumophila str. Corby]
          Length = 468

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 141/373 (37%), Positives = 223/373 (59%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L  +++ ++  + Y   TPIQ++++P++L+  D+   A+TG+GKTA+F L +L
Sbjct: 11  LSFSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDIIAQAKTGSGKTAAFALCLL 70

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L+     V+    L+L PTRELA QV+    +      N+ +  L GGIP + Q   L
Sbjct: 71  NNLKISFFAVQ---ALVLCPTRELAEQVSQAIRRLACLMPNVKIINLSGGIPMQPQLGSL 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA +++ TPGRIL H     L ++ ++ LV+DEADRMLDMGF   I+NI S+ P  RQ
Sbjct: 128 RHGAHIIVGTPGRILKHLKNASLDLSQVKALVLDEADRMLDMGFFDDIKNIISICPKQRQ 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +E++++S+ F+++PK + V TP    +  +H +    ++ ++K  LL+ LL
Sbjct: 188 TLLFSATYPEEIKRLSKQFMKDPKEVHVVTPPEEIDIEQHFY--EVSRQAQKFPLLKSLL 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                + + +IFCN K+  V +   L  +GFS  A++G+++Q  R   +  F   +  ++
Sbjct: 246 LHYRPV-SVLIFCNTKQQTVEVTDQLINEGFSAIALNGDMEQIERDLAVLRFANQSCSIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++  V NFD+    + +IHRIGRTGRAG  G A ++V   D + I A
Sbjct: 305 VATDVAARGLDIKELSAVINFDLAFDHDIHIHRIGRTGRAGSKGIALSIVTPADAQRICA 364

Query: 360 IEKLIEKKVDWLN 372
           IE      + W N
Sbjct: 365 IEDNYPHPIHWGN 377


>gi|143462274|sp|Q0CIQ3|RRP3_ASPTN RecName: Full=ATP-dependent rRNA helicase rrp3
          Length = 445

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 141/368 (38%), Positives = 215/368 (58%), Gaps = 8/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG+   +  A  + GY  PTPIQ + IP+ L+  D+ G+A+TG+GKTA+FVLPML  
Sbjct: 30  FRELGVIDSLCEACEELGYTAPTPIQERCIPIALEGRDLIGLAETGSGKTAAFVLPMLQA 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     + +   +LIL PTRELA Q+A   E  G   ++   LLIGG+   +Q   L + 
Sbjct: 90  LMD---KPQQFHSLILAPTRELAQQIAHTVEALGARISVRCTLLIGGMDMISQAIALGKK 146

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             V++ TPGR+LDH    K   +  ++ LV+DEADR+LD+ F P +  +  L+P  R+T 
Sbjct: 147 PHVIVATPGRLLDHLENTKGFSLRTLKYLVLDEADRLLDLDFGPILDKLLRLLP-KRKTY 205

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM+ +++ +    L +P R+ V+T + TA  +   ++  +  +  K   L  LL  
Sbjct: 206 LFSATMSSKVESLQRASLSDPVRVSVSTKNQTASKLLQSYL--FIPHKFKDFYLVYLLNE 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   + GIIF         L   L   GF    IHG + Q +R+  L+ F+  +  L++A
Sbjct: 264 R-AGQMGIIFTRTVHETQRLSIMLRNLGFPAIPIHGQLSQSARLASLNKFRARSRNLLIA 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP V +V N+D+P  ++ YIHR+GRT RAG+ G AF+ V + +++    IE
Sbjct: 323 TDVAARGLDIPAVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVTQYEVELWLRIE 382

Query: 362 KLIEKKVD 369
             + KKV+
Sbjct: 383 DALGKKVE 390


>gi|145301126|ref|YP_001143967.1| ATP-dependent RNA helicase RhlB [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|189040025|sp|A4STJ7|RHLB_AERS4 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|142853898|gb|ABO92219.1| ATP-dependent RNA helicase RhlB [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 429

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 141/372 (37%), Positives = 226/372 (60%), Gaps = 9/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FA +GL P+V+  +   G+   TPIQ  ++PL+++ HD+ G AQTGTGKT +F+      
Sbjct: 11  FAQMGLEPEVLAGLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTIAFLAATFNY 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT        V  PR +I+ PTRELA Q+ ++ +    +  L + L  GG  ++ Q   
Sbjct: 71  LLTHPLSNPRLVNQPRAIIMAPTRELAVQIYNDADTISASTGLKLGLAYGGEGYDKQLAV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-- 176
           LE+G D+LI T GRI+D+F    + ++NI+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LEQGVDILIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPT 190

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R ++LFSAT++  +Q+++   + +P+ +++     T   I+      Y     K  LL 
Sbjct: 191 ERLSMLFSATLSLRVQELAYEHMNHPEHVQIEPEQMTGIRIQEELF--YPSNEDKMLLLL 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ +   K  I+F N K    ++   LE  G  V  + G++ Q+ RMKIL +F +GT+
Sbjct: 249 SLMEEEWPEK-AIVFANTKHVCEDVHAWLENDGHRVGLLTGDVPQKKRMKILEDFTKGTL 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL IPDV HVFN+D+P+ AE+Y+HRIGRTGRAG+ G + +L  ++   +
Sbjct: 308 DILVATDVAARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKSGHSISLACEDYAFN 367

Query: 357 IDAIEKLIEKKV 368
           + AIE+ I   +
Sbjct: 368 LPAIEEYIHHPI 379


>gi|159478699|ref|XP_001697438.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158274317|gb|EDP00100.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 515

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 136/367 (37%), Positives = 215/367 (58%), Gaps = 22/367 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA++ L P +V  +    Y  PTPIQ + +P+ L   D+ G A+TG+GKTASF +PM+  
Sbjct: 115 FAEMNLHPNIVADIQHHKYETPTPIQAQGLPIALSGRDILGCAETGSGKTASFSIPMIQH 174

Query: 62  ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTV--ALLIGGIPFEAQNKK 118
            L +   R    P  L+L PTRELA Q+    + + ++   +V  ++++GG+P   Q   
Sbjct: 175 CLNQQPLRAGDGPMALVLAPTRELAQQIEREVKAFSRSSGRSVRTSIVVGGVPMHEQRHD 234

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G +V++ TPGR +DH  +G   +  I  +V+DEADRMLDMGF P I+ + + +P   
Sbjct: 235 LRNGVEVVVATPGRFIDHLQQGNTNLGRISYVVLDEADRMLDMGFEPQIKEVMNNLPPKH 294

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIE---VNTPSS-TAETIEHCFVATYAQYSKKCAL 234
           QTLLFSATM  E+++++  +L  P  ++   V+TP++  ++ +EH      A   +K  +
Sbjct: 295 QTLLFSATMPKEIEELARAYLNKPVTVKIGAVSTPTANVSQRLEH------APEPQKLDI 348

Query: 235 LQQLLQSQDT--------MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           L  L+ ++          M   I+F  +K     +  +L + G +  A+HG ++Q  R  
Sbjct: 349 LVALISAEVAAEAAGGPPMPLTIVFVERKTRCDEVAAALREDGINANALHGGLNQNEREA 408

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L +F +G I+++VA+D+A+RGLDI  +GHV N D+P   E+Y+HRIGRTGRAG  G+A 
Sbjct: 409 ALRDFAKGDIKVLVATDVASRGLDIKGIGHVINMDLPKTFEDYVHRIGRTGRAGTKGRAT 468

Query: 347 TLVAKED 353
           +L    D
Sbjct: 469 SLWNDRD 475


>gi|29346241|ref|NP_809744.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568326|ref|ZP_04845737.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6]
 gi|29338136|gb|AAO75938.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842399|gb|EES70479.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6]
          Length = 422

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 139/373 (37%), Positives = 224/373 (60%), Gaps = 11/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ + IP++L+  D+  +AQTGTGKTA+F+LP+L
Sbjct: 1   MKFSELKLNANVLDALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL---TVALLIG--GIPFEAQ 115
             L +G         +I+ PTRELA Q+    E  G +Y +   +VA+  G  GI FE Q
Sbjct: 61  NKLSEGGHPEDAINCVIMSPTRELAQQIDQQME--GFSYFMPASSVAVYGGNDGILFEQQ 118

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P
Sbjct: 119 KKGLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIVKYLP 178

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT++FSATM  ++Q++++  L NP  I++       + I+  +V    Q   K  ++
Sbjct: 179 KERQTIMFSATMPAKIQQLAKTILNNPAEIKLAVSRPADKIIQAAYVCYENQ---KLGII 235

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + L  + +  +  IIF + K  V  +  +L+    +V  +H +++Q  R  ++  FK G 
Sbjct: 236 RSLF-TDEVPERVIIFASSKIKVKEVTKALKMMKLNVGEMHSDLEQAQREVVMHEFKAGR 294

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+ ARG+DI D+  V NFDVP+ +E+Y+HRIGRT RA   G A T +++++  
Sbjct: 295 INILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQS 354

Query: 356 HIDAIEKLIEKKV 368
           +  +IE  +EK++
Sbjct: 355 NFKSIENFLEKEI 367


>gi|68473005|ref|XP_719308.1| hypothetical protein CaO19.7546 [Candida albicans SC5314]
 gi|46441121|gb|EAL00420.1| hypothetical protein CaO19.7546 [Candida albicans SC5314]
 gi|238880344|gb|EEQ43982.1| ATP-dependent rRNA helicase RRP3 [Candida albicans WO-1]
          Length = 399

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 142/376 (37%), Positives = 214/376 (56%), Gaps = 14/376 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           + KPTPIQ + IP  L+  D+ G+AQTG+GKTA+F +P+L  L   +        L+L P
Sbjct: 3   FTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQQPYF---ALVLAP 59

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TRELA Q+ D F+  G +  L  + ++GG+    Q + L R   V++ TPGRI+DH    
Sbjct: 60  TRELAFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPGRIMDHLEHT 119

Query: 141 K-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
           K   + N++ LV+DEADR+LDM F P +  I  ++P  R T LFSATMT++++K+    L
Sbjct: 120 KGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTYLFSATMTNKIEKLQRASL 179

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
            NP R+ V++   TA+ +    +     Y  K  +L  LL ++   K+ I+F     +  
Sbjct: 180 HNPVRVAVSSKYQTADNLVQSMMLVNDGY--KNTILIHLL-NEFMGKSIIVFTRTVAHAQ 236

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
                    GF+   +HG + Q  R+  L+ FK     ++VA+D+AARGLDIP V  V N
Sbjct: 237 RTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAARGLDIPSVDVVIN 296

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           +D+P  ++ YIHR+GRT RAGR GK+ +L+ + D++    IE ++ KK+   +       
Sbjct: 297 YDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIESVLGKKLPKED------K 350

Query: 380 PPLEKIDIAQHNHARK 395
           PP E +D A H H  K
Sbjct: 351 PPKEVLD-ALHVHVDK 365


>gi|159130845|gb|EDP55958.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus A1163]
          Length = 472

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 138/369 (37%), Positives = 217/369 (58%), Gaps = 10/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DLG+  ++  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 54  FKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQA 113

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++EK ++       LIL PTRELA Q++ +FE  G   N+  A+++GG+   +Q+  L +
Sbjct: 114 LMEKPQSFF----GLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGK 169

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+LDH    K   +  ++ LV+DEADR+LDM F P +  I  ++P  R+T
Sbjct: 170 KPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRT 229

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LFSATM+ +++ +    L NP R+ V++    T  T+   ++  +  +  K   L  LL
Sbjct: 230 FLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYL--FLPHKHKDIYLVYLL 287

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   ++ IIF         +   L   GF    +HG + Q +R+  L  F+  +  ++
Sbjct: 288 -NEFVGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDIL 346

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V NFD+P  ++ Y+HR+GRT RAG+ G A + V + D++    
Sbjct: 347 VATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLR 406

Query: 360 IEKLIEKKV 368
           IE  + KK+
Sbjct: 407 IEGALGKKL 415


>gi|145630403|ref|ZP_01786184.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|260582313|ref|ZP_05850106.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
 gi|144984138|gb|EDJ91575.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|260094681|gb|EEW78576.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
          Length = 444

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 136/383 (35%), Positives = 214/383 (55%), Gaps = 6/383 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP L  
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++        
Sbjct: 66  LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QTL
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  EL    +E  L +P +++        + I   +    +    K  LL + ++
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLVRFIE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++  + GI+F  ++++   L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 245 TEEVTR-GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381
           ++  E+  K   L G      PP
Sbjct: 364 KRYTEEILKARILAGLEPRTKPP 386


>gi|307182555|gb|EFN69748.1| ATP-dependent RNA helicase bel [Camponotus floridanus]
          Length = 692

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 153/395 (38%), Positives = 220/395 (55%), Gaps = 27/395 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F ++ L+  +  ++  AGY KPTP+Q   IP+++ R DV   AQTG+GKTA+F++P+L  
Sbjct: 210 FDEVKLTEIIKNSIALAGYDKPTPVQKYAIPIIIGRRDVMACAQTGSGKTAAFLVPILNQ 269

Query: 62  ILEKG-----------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           I E G             R + P  L+L PTRELA Q+ D   K+     +  A++ GG 
Sbjct: 270 IYESGPRPPPVQANSSGRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGGS 329

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L+RG  +L+ TPGR++D   RGK+ ++N   LV+DEADRMLDMGF P I+ I
Sbjct: 330 NIVDQMRELDRGCHLLVATPGRLVDMLGRGKIGLHNCRYLVLDEADRMLDMGFEPQIRRI 389

Query: 171 TSL--VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                +P T  RQTL+FSAT   E+Q ++ +FL N   + V    ST+E I    V  + 
Sbjct: 390 VQEDNMPPTGERQTLMFSATFPKEIQMLARDFLSNYIFLAVGRVGSTSENITQKIV--WV 447

Query: 227 QYSKKCALLQQLLQSQDTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
           +   K + L  LLQ+ +          ++F   KK    L   L   G+ V +IHG+  Q
Sbjct: 448 EEHDKRSYLLDLLQASNFSDPSAESLTLVFVETKKGADMLEEYLATMGYPVTSIHGDRTQ 507

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P   E Y+HRIGRTGR G 
Sbjct: 508 REREEALRRFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGN 567

Query: 342 HGKAFTLVAKEDIKHI-DAIEKLIEKKVD---WLN 372
            G A +    ++   + D +  LIE   +   WL+
Sbjct: 568 LGLATSFFNHKNHNLVRDLVSLLIEANQELPPWLD 602


>gi|23397305|gb|AAN31934.1| putative RNA helicase, DRH1 [Arabidopsis thaliana]
          Length = 423

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 131/331 (39%), Positives = 200/331 (60%), Gaps = 8/331 (2%)

Query: 39  HDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGK 97
            D+  IA+TG+GKT  +++P    L++ R   RM P  L+L PTRELA Q+ +   K+G+
Sbjct: 1   RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGR 60

Query: 98  NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
           +  ++   L GG P   Q + LERGAD+++ TPGR+ D     ++ +  I  LV+DEADR
Sbjct: 61  SSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADR 120

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTA 214
           MLDMGF P I+ I   +P  RQTL+++AT    ++K++ + L NP ++    V+   +  
Sbjct: 121 MLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANK 180

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
              +H  V    +  ++   L+Q+L+SQ+     IIFC+ K+    L  +L +Q F   A
Sbjct: 181 SITQHIEVVAPMEKQRR---LEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAA 236

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           IHG+  Q  R  +L+ F+ G   ++VA+D+AARGLD+ D+  V N+D PN  E+Y+HRIG
Sbjct: 237 IHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIG 296

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           RTGRAG  G+AFT    +D KH   + K++E
Sbjct: 297 RTGRAGATGQAFTFFGDQDSKHASDLIKILE 327


>gi|94969920|ref|YP_591968.1| DEAD/DEAH box helicase-like [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551970|gb|ABF41894.1| DEAD/DEAH box helicase-like protein [Candidatus Koribacter
           versatilis Ellin345]
          Length = 423

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 144/386 (37%), Positives = 221/386 (57%), Gaps = 14/386 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ LS  +   +  A ++ PTP+Q K IP  L   D+   AQTGTGKT +F++P L +
Sbjct: 29  FNDMPLSDVLKQRLEAAQFINPTPVQEKAIPPALDGRDILATAQTGTGKTLAFIIPALEM 88

Query: 63  LEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L     R   P   + LIL PTRELA QV   +E+       + AL++GG     Q + +
Sbjct: 89  L-----RDTEPCGVQVLILVPTRELAMQVHGVYEQLKGKKLKSAALVMGGTSERNQIQSI 143

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA V++ TPGR+ D+  R  + ++ +E+LV+DEADRM+DMGF+P I+ I   +P  +Q
Sbjct: 144 RSGARVVVATPGRLEDYMGRRLVDLSQVEMLVLDEADRMMDMGFLPAIKRILRALPRDKQ 203

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM   +  + ++ L N  R+E+ +    A  +E   +       K    L+QLL
Sbjct: 204 TLCFSATMGPAVSGIVQDCLYNAVRVEIGSILKPAAAVELHAIEVPIMGKKDA--LRQLL 261

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+     ++F   K+    L   L + GFS   IHG+  Q  R   L+ F +G+I+++
Sbjct: 262 YEQE--GKTLVFARTKRGTERLAKELIRDGFSAAMIHGDRSQSQRNAALAAFDKGSIKVL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV NFD+P   E++IHR+GRTGRAG  G A +LV+  ++  +  
Sbjct: 320 VATDVAARGLDVDDIAHVINFDLPQVPEDFIHRVGRTGRAGATGMATSLVSGAEVFELRN 379

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKI 385
           IE+ ++ K+     DL++   P  ++
Sbjct: 380 IERTLKLKI--ARRDLNATTTPKREV 403


>gi|57529371|ref|NP_001006293.1| probable ATP-dependent RNA helicase DDX27 [Gallus gallus]
 gi|53130268|emb|CAG31463.1| hypothetical protein RCJMB04_6k21 [Gallus gallus]
          Length = 758

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 141/365 (38%), Positives = 215/365 (58%), Gaps = 5/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F+LP+L
Sbjct: 180 LSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVL 239

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++  +  ++T  L +GG+  + Q   L 
Sbjct: 240 ERLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALR 299

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            G D+LI TPGR++DH  N     ++++E+L++DEADRMLD  F   ++ I  L    RQ
Sbjct: 300 SGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSRHRQ 359

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQL 238
           T+LFSATMT+E++ ++   L+NP RI VN+ +  A  +   F+     +   + A++  L
Sbjct: 360 TMLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSAL 419

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEK-QGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L    T  + ++   Q K   +  H L    G  V  +HGN+ Q  R++ L  FK+  I 
Sbjct: 420 LTR--TFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQID 477

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K +
Sbjct: 478 ILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKML 537

Query: 358 DAIEK 362
             I K
Sbjct: 538 KEIVK 542


>gi|281208721|gb|EFA82896.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 803

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 145/355 (40%), Positives = 204/355 (57%), Gaps = 8/355 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  +  AV   G+  PTPIQ KTIP   Q    C  A TG+GKTA+F+LP+L  
Sbjct: 183 FQELHLSRPLQKAVQKLGFTMPTPIQAKTIPPSTQ----C--ATTGSGKTAAFLLPILER 236

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L       R  R L+L PTRELA Q     E   +  N+T  L++GG+  + Q  +L + 
Sbjct: 237 LLYRDVDNRAIRVLVLLPTRELALQCQSVLENLAQFTNITSCLVVGGLSNKVQEVELRKR 296

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR++DH  N   + ++++EILV+DEADR+LDMGF   ++ I    P  RQ+L
Sbjct: 297 PDVVIATPGRLIDHLLNAHDVGLDDLEILVLDEADRLLDMGFKDELEKIVESCPANRQSL 356

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSAT++DE++ +++  L+ P R+ V+     A T+E  FV     Q   + ALL  L  
Sbjct: 357 LFSATLSDEVKTLAKLSLKQPIRVAVDALYQVASTLEQEFVKIRPTQLGDRPALLLSLAS 416

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   KK V  LC      G S   +HG++ Q  R + L  F++G +Q ++
Sbjct: 417 RVFNTGGTIIFFKSKKEVHRLCIIFGLAGLSAAELHGDLSQEQRFESLQLFRDGKVQFLL 476

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ASD+AARGLD+  V  V N+++P     YIHR+GRT RAG  G+A + V + D K
Sbjct: 477 ASDVAARGLDVLGVKTVINYNIPRNLAQYIHRVGRTARAGAQGRACSFVTEGDRK 531


>gi|325299227|ref|YP_004259144.1| DEAD/DEAH box helicase domain-containing protein [Bacteroides
           salanitronis DSM 18170]
 gi|324318780|gb|ADY36671.1| DEAD/DEAH box helicase domain protein [Bacteroides salanitronis DSM
           18170]
          Length = 618

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 218/367 (59%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61
           F +LG++P++  A+ + GY  P P+Q + IP +L   +DV  +AQTGTGKTA+F LP++ 
Sbjct: 4   FEELGVAPEIRKAIEEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLPLIQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++ G    R+P+ LIL PTREL  Q+A +   Y K   +L +  + GG   E+Q K L+
Sbjct: 64  KIDVGN---RVPQALILCPTRELCLQIAGDLNDYSKYITDLKIIPVYGGSSIESQIKSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR++D   R    +  I  +V+DEAD ML+MGF   I  I   VP  R T
Sbjct: 121 KGVHIIVATPGRLIDLIERKVAKLETIRDVVMDEADEMLNMGFTDSINAILEKVPEDRNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSATM+ E+ ++++ +L++ K I + T +   + + H     Y  ++K   L  + + 
Sbjct: 181 LMFSATMSPEISRIAKTYLRDAKEITIGTKNEGTKNVHHV---AYIVHAKDKYLALKRVV 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               M  GIIFC  +     +   L + G++  ++HG + Q  R  ++  F++  +QL+V
Sbjct: 238 DFYPMIYGIIFCRTRLETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRHLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVNDLTHVINYGLPDDVESYTHRSGRTGRAGKTGISIAIMNLREKGKMKQI 357

Query: 361 EKLIEKK 367
           E+++ KK
Sbjct: 358 ERILNKK 364


>gi|298385617|ref|ZP_06995175.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
 gi|298261758|gb|EFI04624.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
          Length = 413

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 139/373 (37%), Positives = 224/373 (60%), Gaps = 11/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ + IP++L+  D+  +AQTGTGKTA+F+LP+L
Sbjct: 1   MKFSELKLNANVLDALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL---TVALLIG--GIPFEAQ 115
             L +G         +I+ PTRELA Q+    E  G +Y +   +VA+  G  GI FE Q
Sbjct: 61  NKLSEGGHPEDAINCVIMSPTRELAQQIDQQME--GFSYFMPASSVAVYGGNDGILFEQQ 118

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P
Sbjct: 119 KKGLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIVKYLP 178

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT++FSATM  ++Q++++  L NP  I++       + I+  +V    Q   K  ++
Sbjct: 179 KERQTIMFSATMPAKIQQLAKTILNNPAEIKLAVSRPADKIIQAAYVCYENQ---KLGII 235

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + L  + +  +  IIF + K  V  +  +L+    +V  +H +++Q  R  ++  FK G 
Sbjct: 236 RSLF-TDEVPERVIIFASSKIKVKEVTKALKMMKLNVGEMHSDLEQAQREVVMHEFKAGR 294

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+ ARG+DI D+  V NFDVP+ +E+Y+HRIGRT RA   G A T +++++  
Sbjct: 295 INILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQS 354

Query: 356 HIDAIEKLIEKKV 368
           +  +IE  +EK++
Sbjct: 355 NFKSIENFLEKEI 367


>gi|294886917|ref|XP_002771918.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239875718|gb|EER03734.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 521

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 140/393 (35%), Positives = 217/393 (55%), Gaps = 19/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F   G    ++  +  AG+V PTPIQI+  P+ +   D+ GIA+TG+GKT +F+LP +  
Sbjct: 118 FEQAGFPDYILHELAQAGFVAPTPIQIQGWPVAMSGRDMVGIAETGSGKTLAFLLPAIVH 177

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L++G      P  L++ PTRELA Q+ +   K+GK+  +      GG+P   Q 
Sbjct: 178 INAQPYLQRGDG----PIVLVMAPTRELAVQIQEECNKFGKSSKIKNTCCYGGVPRGPQA 233

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  G ++ I TPGR++D     +  +  +  LV+DEADRMLDMGF P I+ ITS +  
Sbjct: 234 RDLSEGVEICIATPGRLIDFLESQRTNLRRVTYLVLDEADRMLDMGFEPQIRKITSQIRP 293

Query: 177 TRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            RQTLL+SAT   E+Q ++ +   + P  I V T +  A      +V    +Y K+  L 
Sbjct: 294 DRQTLLWSATWPKEVQGLARDLCREEPVHINVGTLTLKACHNVTQYVDVVQEYEKRDRLK 353

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L +  D  K  +IF + K+   +L  +L   G+    IHG+  Q  R  +L  FK G 
Sbjct: 354 QLLERVMDGSKL-LIFTDTKRGADDLTRTLRMDGWPALCIHGDKKQEERDWVLHEFKSGK 412

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +M+A+D+A+RGLD+ D+ HV N+D P + E+Y+HRIGRTGRAG  G A+T    + IK
Sbjct: 413 SPIMIATDVASRGLDVKDIRHVVNYDFPGQIEDYVHRIGRTGRAGCKGNAYTFFTADKIK 472

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
               + +++ +          +++P LE++ + 
Sbjct: 473 MARGLVQILREAN-------QTVSPELERLSMT 498


>gi|10177293|dbj|BAB10554.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
          Length = 564

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 143/384 (37%), Positives = 215/384 (55%), Gaps = 15/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D      ++ A+   G+ +PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP L  
Sbjct: 140 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 199

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +    A+ R+     P  LIL PTRELA Q+ +   K+G    +    + GG P   Q +
Sbjct: 200 VS---AQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIR 256

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   
Sbjct: 257 DLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPD 316

Query: 178 RQTLLFSATMTDELQKVSENFLQNP-KRIEVNTPSSTAETIEHC--FVATYAQYSKKCAL 234
           RQTLL+SAT   E++ ++  FL++P K I  +T     ++I      V T  +Y++   L
Sbjct: 317 RQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTL 376

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L+QL+     +    IF   K+    +   L   G+   AIHG+  Q  R ++L+ FK G
Sbjct: 377 LKQLMDGSKIL----IFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSG 432

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +M A+D+AARGLD+ D+  V N+D PN  E+YIHRIGRTGRAG  G AFT    ++ 
Sbjct: 433 RSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNA 492

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL 378
           K    + K++++    +   LS+L
Sbjct: 493 KFARELVKILQEAGQVVPPTLSAL 516


>gi|115958772|ref|XP_001180014.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           [Strongylocentrotus purpuratus]
          Length = 785

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 138/382 (36%), Positives = 210/382 (54%), Gaps = 34/382 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + GL   +   + + GY  P+PIQ + IP+ LQ  DV G+A+TG+GKTA+F++P+L  
Sbjct: 358 WDEYGLPKHITDIIAEVGYKDPSPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLIPLLVW 417

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      E+   + + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q 
Sbjct: 418 ISTLPKIERDEDKDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVTIIGGISREDQG 477

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            KL  G +++I TPGR++D      L++     +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 478 FKLRLGCEIVIATPGRLIDVLENRYLVLCQCTYVVLDEADRMIDMGFEPDVQKILEYLPV 537

Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           T                         RQT++F+ATM   +++V+ ++L+ P  + + +  
Sbjct: 538 TNQKPDSEEAEDSAKLLANFASKKKYRQTVMFTATMPTAVERVARSYLRRPAVVYIGSIG 597

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
              E+++     T  Q  K+  L+Q L +  D     +IF NQKK V  L   LEK GF+
Sbjct: 598 KPVESVQQLVYMTSNQ-EKRQKLIQLLEKGIDP--PVLIFVNQKKRVDALAKRLEKMGFN 654

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
              +HG   Q  R   L++ K G   ++VA+D+A RG+DI DV  V NFD+    E+Y H
Sbjct: 655 ATTLHGGKSQEQREYALASLKAGLKDILVATDVAGRGIDIKDVSVVINFDMAKNIEDYTH 714

Query: 332 RIGRTGRAGRHGKAFTLVAKED 353
           RIGRTGRAG+ G A + +  +D
Sbjct: 715 RIGRTGRAGKTGTAVSFLTPDD 736


>gi|146163668|ref|XP_001012102.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|146145909|gb|EAR91857.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 533

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 149/409 (36%), Positives = 228/409 (55%), Gaps = 21/409 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+  ++V A     YVKPT IQ +++   L++ D+  +A+TG+GKT +F LP++  
Sbjct: 98  FQSLGVCEELVEACNRLKYVKPTAIQRESLVYTLKQRDIIALAETGSGKTLAFALPVIQN 157

Query: 63  LEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L      +  P+    L+L PTREL  Q+A++FE  G   +L   +++GG+   AQ   L
Sbjct: 158 L------LDAPQPFYALVLSPTRELCMQIAEHFEALGVGISLKTTVIVGGLDPMAQAIAL 211

Query: 120 ERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   ++I TPGRIL H    K      ++ LV+DEAD++L+M F   I  I  ++P  R
Sbjct: 212 SKKPHIIIGTPGRILYHMQNTKGFNFKALKFLVLDEADKLLNMDFEKDINQILDIIPKKR 271

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            T LFSATMT+++ K+    L++P +IEV++      T+   +    A+Y K C L+  L
Sbjct: 272 NTFLFSATMTNKVHKLQRASLKDPVKIEVSSKYQMVSTLVAQYAFIPAKY-KDCYLVYSL 330

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             ++      IIF     N + L   L   GFS   IHG + Q  R+  ++ FK G  ++
Sbjct: 331 --NEFAGNTSIIFVQTCLNAIKLTLMLRNLGFSAVTIHGQMSQVKRLGAINKFKSGEKKI 388

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RGLDIP V  V N+D+P  A+ Y+HR+GRT RAGR GKA + V + D++   
Sbjct: 389 LVATDVASRGLDIPSVDLVINYDIPTNAKEYVHRVGRTARAGRAGKAISFVTQYDVEMYL 448

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA--------RKNNPI 399
            IE LI KK+D    +   +    E++  AQ   A        +KNNP+
Sbjct: 449 KIEALIGKKLDQYKCEEYQVLVFNERVQEAQRIAAQEIKEIMEKKNNPL 497


>gi|50293017|ref|XP_448941.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661092|sp|Q6FLF3|DBP2_CANGA RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49528254|emb|CAG61911.1| unnamed protein product [Candida glabrata]
          Length = 544

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 208/364 (57%), Gaps = 12/364 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ KPT IQ +  P+ L   D+ GIA TG+GKT S+ LP +  
Sbjct: 112 FDEAGFPDYVLKEVKAEGFDKPTSIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVH 171

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 172 INAQPLLSPGDG----PIVLVLAPTRELAVQIQKECSKFGKSSRIRNTCVYGGVPRGQQI 227

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++L RGA+++I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 228 RELIRGAEIVIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 287

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E+Q+++ ++L +P ++++ +    A       V   +++ K+  L++
Sbjct: 288 DRQTLMWSATWPKEVQQLARDYLNDPIQVQIGSLELAASHNITQLVEVVSEFEKRDRLVK 347

Query: 237 QL-LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L   SQD     +IF + K+    +   L + G+   AIHG+ DQR R  +L+ F+ G 
Sbjct: 348 HLDTASQDKESKILIFASTKRTCDEITSYLRQDGWPALAIHGDKDQRERDWVLNEFRTGN 407

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+AARG+D+  +  V N+D+P   E+Y+HRIGRTGRAG  G A +    ED K
Sbjct: 408 SPIMVATDVAARGIDVKGINFVVNYDMPGNIEDYVHRIGRTGRAGATGTAISFFT-EDNK 466

Query: 356 HIDA 359
            + A
Sbjct: 467 SLGA 470


>gi|298484048|ref|ZP_07002217.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
 gi|298269829|gb|EFI11421.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
          Length = 420

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 218/371 (58%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ + IP++L+  D+  +AQTGTGKTA+F+LP+L
Sbjct: 1   MKFSELQLNANVLEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             L +G+        +I+ PTRELA Q+    E +     ++   + GG   I FE Q K
Sbjct: 61  NKLSEGKHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIAKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++   L +P  I++       + I+  +V    Q   K  +++ 
Sbjct: 181 RQTIMFSATMPAKIQQLANTILNDPSEIKLAVSKPAEKIIQAAYVCYENQ---KLGIIRS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   +   +  I+F + K  V  +  +L+    +V  +H +++Q  R  ++  FK G I 
Sbjct: 238 LFMDE-VPERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V NFDVP+ +E+Y+HRIGRT RA   G A T + +++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFINEKEQSNF 356

Query: 358 DAIEKLIEKKV 368
            +IE  +EK++
Sbjct: 357 KSIENFLEKEI 367


>gi|187251183|ref|YP_001875665.1| superfamily II DNA and RNA helicase [Elusimicrobium minutum Pei191]
 gi|186971343|gb|ACC98328.1| Superfamily II DNA and RNA helicase [Elusimicrobium minutum Pei191]
          Length = 502

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 140/365 (38%), Positives = 212/365 (58%), Gaps = 9/365 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  LS   +  + + G+  PTP+Q +TIPL ++ HDV   AQTG+GKT +F +P++ 
Sbjct: 5   NFQDFSLSEITLKTIENMGFTTPTPVQAQTIPLAIEGHDVLASAQTGSGKTCAFGIPVIE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L + ++       LI+ PTREL  QV   F    KNY  LT A ++GG     Q++ L+
Sbjct: 65  HLVQNKSN----NALIVTPTRELGEQVHKVFTMLTKNYPQLTSAFIVGGKSITQQSRALK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +    +I TPGR+ D  NRG+L ++  ++ V DE DRMLD+GFI  I++I + +P  RQ 
Sbjct: 121 KRPRCIIGTPGRLNDMINRGELDLSKTKVAVWDEMDRMLDIGFINQIESIMAKLPVKRQM 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT    + K++E +L  PKRI V+  +S A  +E   ++       K   L  LL+
Sbjct: 181 MMFSATYPKRVIKIAEKYLVAPKRISVDPENSVAVNVEEEIISVI--RDNKFETLVSLLR 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IF   + +V  L   L K+ F   +IHG   Q  R   + +F+E    ++V
Sbjct: 239 AKGG--STLIFARTQTSVEWLDKHLTKESFKANSIHGGYRQGKRNLAIKDFREEKFDILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP +  V N+D+P RAE+YIHRIGRT RAG  G A + V   D    + I
Sbjct: 297 ATDVAARGLDIPHIQLVINYDLPLRAEDYIHRIGRTARAGAKGLAISFVTPNDKHLWNDI 356

Query: 361 EKLIE 365
           +K ++
Sbjct: 357 QKFLK 361


>gi|308048143|ref|YP_003911709.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307630333|gb|ADN74635.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 444

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 207/369 (56%), Gaps = 5/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L  +++  V   G+ + T IQ K IP  +   D+   ++TG+GKT +F+LP +
Sbjct: 1   MQFSQLALDKRLLATVDHLGFAEATEIQQKAIPTAIAGKDLLASSRTGSGKTLAFLLPAM 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L + +    R PR LIL PTRELA QV         N +    L++GG  F  Q+K L
Sbjct: 61  QRLIRSKPLSKRDPRVLILAPTRELAKQVYGQLRLVVANTSYKSLLILGGEDFNQQSKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TR 178
            R    ++ TPGR+ DH   G L ++ +E+L++DEADRMLD+GF   +Q I        R
Sbjct: 121 ARDPHFVVATPGRLADHLEHGHLYLHGLEMLILDEADRMLDLGFADQLQAIHKAADHRKR 180

Query: 179 QTLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+    + +     L NP RI +++ +     I H  + +      K A L+ 
Sbjct: 181 QTLMFSATLDHAAVNQFGAQLLNNPTRIRIDSEAEIHSDIHHRMLFS-DHLDHKEAQLKA 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ QD  K  I+F   + +   L   L + G+S  A+ G ++Q +R +I+ +F  G  +
Sbjct: 240 LLEKQD-FKQLILFTATRGDTDRLAVLLSEWGYSTLALSGELNQTARSQIMQDFAAGKAK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ +D+A+RGLDIP V HV NFD+P   E Y+HR+GRTGRAG  G AF+LV  +D    
Sbjct: 299 ILITTDVASRGLDIPQVSHVVNFDLPKHPEEYVHRVGRTGRAGAKGDAFSLVGPKDWPSF 358

Query: 358 DAIEKLIEK 366
             +E  +++
Sbjct: 359 KKLEAFLQQ 367


>gi|307200175|gb|EFN80473.1| ATP-dependent RNA helicase bel [Harpegnathos saltator]
          Length = 611

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 145/358 (40%), Positives = 207/358 (57%), Gaps = 22/358 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F ++ L+  +  ++  AGY KPTP+Q   IP+++ R DV   AQTG+GKTA+F++P+L  
Sbjct: 219 FDEVKLTEIIKNSIALAGYDKPTPVQKYAIPIIIGRRDVMACAQTGSGKTAAFLVPILNQ 278

Query: 62  ILEKG----------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
           I E G            R + P  L+L PTRELA Q+ D   K+     +  A++ GG  
Sbjct: 279 IYESGPRPPPPQASTGRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGGSN 338

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q ++L+RG  +L+ TPGR++D   RGK+ ++N   LV+DEADRMLDMGF P I+ I 
Sbjct: 339 IVDQMRELDRGCHLLVATPGRLVDMLGRGKIGLHNCRYLVLDEADRMLDMGFEPQIRRIV 398

Query: 172 SL--VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
               +P T  RQTL+FSAT   E+Q ++ +FL N   + V    ST+E I    V  + +
Sbjct: 399 QQDNMPPTGERQTLMFSATFPKEIQILARDFLSNYIFLAVGRVGSTSENITQKIV--WVE 456

Query: 228 YSKKCALLQQLLQSQDTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
              K + L  LLQ+ +   +      ++F   KK    L   L + G+ V +IHG+  QR
Sbjct: 457 EHDKRSYLLDLLQASNFADSSAESLTLVFVETKKGADMLEEYLAQMGYPVTSIHGDRTQR 516

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
            R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P   E Y+HRIGRTGR G
Sbjct: 517 EREEALRRFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMG 574


>gi|293376696|ref|ZP_06622919.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909]
 gi|325845185|ref|ZP_08168493.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
 gi|292644653|gb|EFF62740.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909]
 gi|325488781|gb|EGC91182.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
          Length = 368

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 137/362 (37%), Positives = 207/362 (57%), Gaps = 6/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LG+S  ++  +  +G   PTPIQ +  PL+    DV   AQTGTGKT +F+LP+ 
Sbjct: 1   MNFKTLGVSDDLIQVLKKSGITSPTPIQEQCYPLIKNYKDVIAQAQTGTGKTLAFLLPLF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E     +   + LI+ PTRELA Q+ +   K  +  N+ V    GG    +Q  KL+
Sbjct: 61  ---ENISPDIEATQALIITPTRELALQITEEANKLAEIRNINVLAAYGGRNIGSQLNKLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++I TPGR++DH  R  + ++ ++ +VIDEAD+ML MGF   +  I    P  RQT
Sbjct: 118 KSIHLIIATPGRLIDHLERQTITLDKVKSVVIDEADQMLLMGFRNEVDQILRQTPRNRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   +++++  +  +P  I +       E+I+   V T  ++ K  AL Q L  
Sbjct: 178 LCFSATMAPNVKRLAYRYSYDPTMITIEAKKVAVESIKQELVETTDRW-KADALCQVL-- 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIFC  K+    L   ++++GF+   IH +I Q  R +IL +F+E  +Q ++
Sbjct: 235 EEDNPFLAIIFCRTKRRADQLFAKMKQRGFNTQVIHSDIAQNKRERILKSFREADLQYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI  V H++N+D+P   E YIHRIGRTGRAG  G     VA +D   ++AI
Sbjct: 295 ATDVASRGLDISGVTHIYNYDIPETPETYIHRIGRTGRAGEEGYTCLFVAPKDDFELNAI 354

Query: 361 EK 362
           E+
Sbjct: 355 ER 356


>gi|209877961|ref|XP_002140422.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209556028|gb|EEA06073.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 442

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 136/372 (36%), Positives = 219/372 (58%), Gaps = 11/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LG+  ++  A    G++KPT IQ + IP+ L+  D+ G+A+TG+GKT +F+LP+L
Sbjct: 29  ITFASLGVCKELCLACESLGWLKPTDIQREAIPIALRGGDIIGLAETGSGKTGAFILPIL 88

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L + ++R+    +++L PTREL  Q+++ F   G   +L VA ++GG+    Q   L 
Sbjct: 89  QSLLENQSRMY---SVVLAPTRELCVQISEQFSALGSLISLQVANIVGGMDMVNQALSLA 145

Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   +++ +PGR++DH    K   +++++ LV+DEADR+L M F   +  I    P  R 
Sbjct: 146 KKPHIIVASPGRLVDHLENTKGFNISSVKYLVMDEADRLLSMDFEIALTKIIEACPKNRN 205

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQ 237
           T LFSATMT ++ K+    L+NP +I VNT   TAE +   + F+    ++S    L+Q 
Sbjct: 206 TYLFSATMTTKVAKLQRVSLKNPVKICVNTKYDTAENLLQYYMFIPFKFKWSYLVILVQN 265

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L Q       GIIF N   +       +++ GFS   +HG ++Q  R+  L+ FK     
Sbjct: 266 LSQY-----TGIIFTNTCISCKRGALLMQQLGFSSVCLHGRMNQTQRLAALNQFKSKQRH 320

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+  +++ +RGLDIP V  V NFD+P  +++Y+HR+GRT RAGR GKA +LV + D++  
Sbjct: 321 LLFTTEVGSRGLDIPHVDFVINFDIPMSSKDYVHRVGRTARAGRSGKAISLVTQYDVEMF 380

Query: 358 DAIEKLIEKKVD 369
             +E  + KK+D
Sbjct: 381 QRVEFALNKKLD 392


>gi|195437654|ref|XP_002066755.1| GK24389 [Drosophila willistoni]
 gi|194162840|gb|EDW77741.1| GK24389 [Drosophila willistoni]
          Length = 808

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 133/382 (34%), Positives = 213/382 (55%), Gaps = 34/382 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + G  P+++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L+ 
Sbjct: 382 WNESGFPPEIIDIIDRVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSW 441

Query: 63  LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           ++      R+      P  +I+ PTRELA Q+ +   K+G+   +   +++GG+  E Q 
Sbjct: 442 IQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQG 501

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 502 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 561

Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           T                         RQT++F+ATM   +++++ ++L+ P  + + +  
Sbjct: 562 TNLKPDTEEAEDESKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG 621

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
              E  E   V    +  K+  L++ L +S D     IIF NQKK    L   LEK G++
Sbjct: 622 KPTERTEQ-IVYMMGENDKRKKLMEILSRSIDP--PIIIFVNQKKGADVLAKGLEKLGYN 678

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
            C +HG   Q  R   L+  K G   ++VA+D+A RG+DI DV  V N+D+    E+Y H
Sbjct: 679 SCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTH 738

Query: 332 RIGRTGRAGRHGKAFTLVAKED 353
           RIGRTGRAG++G A + V K+D
Sbjct: 739 RIGRTGRAGKNGVAISFVTKDD 760


>gi|220933542|ref|YP_002512441.1| DEAD/DEAH box helicase domain-containing protein [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219994852|gb|ACL71454.1| DEAD/DEAH box helicase domain-containing protein [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 432

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 215/373 (57%), Gaps = 9/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L   V   + DAG+ + TPIQ   +P+ L+ HDV G AQTGTGKTA+F++     
Sbjct: 17  FSQFDLPDSVRQGIEDAGFSRCTPIQALALPIALKGHDVAGQAQTGTGKTAAFLIAAFNR 76

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L +  A    +    R LIL PTRELA Q+  +    G +  L + L  GG  ++ Q ++
Sbjct: 77  LLRDPAPAERKQNQIRALILAPTRELAIQIHKDAVTLGAHTGLKLGLAYGGTDYDKQRQQ 136

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV--PF 176
           L  G D+LI TPGRI+D+F +    M  ++++V+DEADRM D+GFI  I+ +   +  P 
Sbjct: 137 LVDGVDILIGTPGRIIDYFKQKVFDMRVVQVMVLDEADRMFDLGFIKDIRFLLRRMTPPT 196

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ++LFSAT++  + +++   + NP++++      TA+ +    V  Y    +K  LL 
Sbjct: 197 ERQSMLFSATLSHRVMELAYEHMNNPEKVQTRDEQVTAQRVRQ--VVYYPANPEKIPLLL 254

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++     ++ ++F N K     L   L+     V  + G++ Q+ R ++L  F+    
Sbjct: 255 GLMKRIGPSRS-MVFVNTKHMADKLEAWLKGNDIKVAVLSGDVPQQKRQRLLKQFENDEF 313

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARGL IPDV HVFNFD+P   E+Y+HRIGRTGRAG  G A +   ++   +
Sbjct: 314 QVLVATDVAARGLHIPDVSHVFNFDLPQSGEDYVHRIGRTGRAGAEGDAVSFACEDSAFY 373

Query: 357 IDAIEKLIEKKVD 369
           +  IE+ I  K++
Sbjct: 374 LPEIEQYIGFKIE 386


>gi|157817897|ref|NP_001100529.1| ATP-dependent RNA helicase DDX42 [Rattus norvegicus]
 gi|149054552|gb|EDM06369.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 (predicted) [Rattus
           norvegicus]
          Length = 929

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 133/357 (37%), Positives = 212/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++ +FK+  I
Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVILDFKKKDI 549

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606


>gi|67483276|ref|XP_656915.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56474154|gb|EAL51537.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 535

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 134/364 (36%), Positives = 212/364 (58%), Gaps = 15/364 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F +      ++  + +  Y+KPTPIQ    P+VLQ  DV GIA+TG+GKT SF++P +
Sbjct: 153 LTFEECNFPQSILDVIKEQNYIKPTPIQAIGWPIVLQGKDVVGIAETGSGKTISFLIPAI 212

Query: 60  LTILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + IL+   A+ R  PR LIL PTREL  Q+AD   K+ K   +      GG+P  +Q K 
Sbjct: 213 IHILDTPLAQYREGPRVLILAPTRELVCQIADEAIKFTKGTAIKTVRCFGGVPQSSQMKD 272

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            + G D+ + TPGR++D   RG   ++    L++DEADRML+MGF   +Q+I   +   R
Sbjct: 273 FQSGCDICVATPGRLIDFIKRGVTSLSRCTFLILDEADRMLEMGFEVQVQDIIGQIRPDR 332

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTP-----SSTAETIEHCFVATYAQYSKKCA 233
           QT++++AT    +Q+ +  F+ +P +I +  P      S  + IE C      Q   + +
Sbjct: 333 QTVMWTATWPQAIQQFALGFMFHPLQINIGNPDLHANESVKQIIEVC------QERDRDS 386

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            + ++++   + K  +IF   K++  NLC+ L  Q + V  +HG+  Q  R + LS+FK 
Sbjct: 387 KMNEIVKRIGSEKKVLIFVKTKRSADNLCYKLRDQRYRVACMHGDKVQAERDRALSDFKS 446

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR--HGKAFTLVAK 351
           G +  ++A+D+A+RGLDI ++  V N+++P+  ENYIHRIGRTGR GR   G+A +L   
Sbjct: 447 GAVNYLIATDVASRGLDIRNIEIVINYEMPSDIENYIHRIGRTGRMGRSVEGEAISLFTY 506

Query: 352 EDIK 355
            D +
Sbjct: 507 ADAR 510


>gi|301119991|ref|XP_002907723.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262106235|gb|EEY64287.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 479

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 147/410 (35%), Positives = 228/410 (55%), Gaps = 13/410 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+   +  A+   G+  P+ IQ + IP  L   D+ G+A+TG+GKT +FV+P+L  
Sbjct: 30  FAELGVDSAICEAIEAVGWSAPSKIQQQAIPHGLAGKDIIGLAETGSGKTGAFVIPILQS 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     R+     L+L PTRELA Q+ + FE  G +  L  A ++GGI    Q   L R 
Sbjct: 90  LLHNPQRLY---ALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARK 146

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             V+I TPGR++DH    K   +  ++ LV+DEADRML M F   I  I  L+P  R T 
Sbjct: 147 PHVVIATPGRLVDHLENTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIVQLMPADRNTY 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT +++K+    L++P ++E+    +T ET++  ++   A++ K C L   L  +
Sbjct: 207 LFSATMTSKVRKLQRASLKDPVKVEITHKFATPETLKQHYLFIPAKF-KDCYLAYVL--N 263

Query: 242 QDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   ++ +IF   CN  + V  +  +L   GF    +HG + Q SR+  L+ FK     +
Sbjct: 264 EVAGQSVLIFASTCNGTQKVTLMLRNL---GFQAICLHGQMPQPSRLGALNKFKAKARNV 320

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V +D+A+RGLDIP V  V N+D+P   ++YIHR+GRT RAGR G A + V + D++   
Sbjct: 321 LVCTDVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVTQYDVELYQ 380

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
            IE L+  K+D  + +  ++    E+++ AQ     +        TG  R
Sbjct: 381 RIEHLLGTKLDAYSCEEETVLVITERVNEAQRIATIEMKEAAANGTGIKR 430


>gi|296394809|ref|YP_003659693.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus
           rotundus DSM 44985]
 gi|296181956|gb|ADG98862.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM
           44985]
          Length = 452

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 140/377 (37%), Positives = 203/377 (53%), Gaps = 12/377 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+   +V A+  AG   P PIQ   +P  L+  DV G   TG+GKT +F LPML  
Sbjct: 6   FASLGVPQPIVSALAKAGVTAPFPIQAAALPPALEGRDVLGRGPTGSGKTLTFGLPMLAR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G ++ R PR L+L PTRELAAQVA        +  L  A ++GG+  + Q  +L RG
Sbjct: 66  LANGASKPRKPRGLVLVPTRELAAQVASALTPLAASVGLRTASVVGGLSMQRQIDELARG 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVL+ TPGR+ DH  +G ++++ + +  +DEAD+M DMGF+P +  I    P   Q LL
Sbjct: 126 VDVLVATPGRLADHLAQGTVVLDEVSVTALDEADQMADMGFLPQVVKILDRTPKKGQRLL 185

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQLLQ 240
           FSAT+  ++ K+   +L NP        +++  T+EH   FV    Q  KK  + +   +
Sbjct: 186 FSATLDGQVDKLVRRYLDNPATCSTAPAAASVSTMEHHMLFV---DQEQKKLVVTEIAAR 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T    I+F + K     L   L   G S  AIHG   Q +R + L  FK G + ++V
Sbjct: 243 EGRT----ILFVHTKHGADRLTKRLRAVGVSAAAIHGGKAQNNRTRTLEAFKSGDVAVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+++AARG+ I  V  V + D P   ++Y+HR GRT RAG  G   TLV   + +  +A+
Sbjct: 299 ATNVAARGVHIDGVDLVVHVDPPADPKDYLHRAGRTARAGESGVVITLVTPAERRDAEAM 358

Query: 361 EK---LIEKKVDWLNGD 374
            +   ++ K V    GD
Sbjct: 359 ARAAGVVVKGVPVRAGD 375


>gi|156973271|ref|YP_001444178.1| ATP-dependent RNA helicase SrmB [Vibrio harveyi ATCC BAA-1116]
 gi|156524865|gb|ABU69951.1| hypothetical protein VIBHAR_00952 [Vibrio harveyi ATCC BAA-1116]
          Length = 407

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 212/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L L   ++ A+ + GY +PT IQ + IP  L   D+   A TGTGKTA+FVLP L  
Sbjct: 5   FAELDLDQNLLEAIDEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQY 64

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+    R   P R LIL PTRELA QVAD      KN  L +  + GG+ ++     L  
Sbjct: 65  LQDFPRRKPGPARILILTPTRELAMQVADQARALAKNTKLNIFTITGGVQYQEHADILAT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+ ++ +  +     IE L++DEADRMLDMGF P +  +++   + +QTL
Sbjct: 125 TQDIVVATPGRLREYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTL 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLL 239
           LFSAT+  + ++  + + L  P  I+  +P    + I   +  A  A++  K ALL+ ++
Sbjct: 185 LFSATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADDAEH--KLALLKHII 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  I+F   ++ +  L   LE        I G + Q  R   +S F+EGT+ ++
Sbjct: 243 TEQ--AERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFREGTVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A ++V   D   +D 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR 360

Query: 360 IEKLIEKKV 368
           + + +++ +
Sbjct: 361 VARYVKEDI 369


>gi|148979305|ref|ZP_01815437.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3]
 gi|145961845|gb|EDK27137.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3]
          Length = 424

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 141/368 (38%), Positives = 210/368 (57%), Gaps = 7/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+L L+ K V A L + + KPT IQ   IP ++   DV  +AQTG+GKT +F LP+L
Sbjct: 1   MSFANLTLNTKTVAA-LPSQFNKPTEIQQAVIPTIVSGRDVLALAQTGSGKTLAFGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++G  +++    L++ PTRELA+QV ++ +      ++    L GG   + Q ++L 
Sbjct: 60  NNIDQGSNKLQ---ALVIVPTRELASQVTESLKPIATALSIKTVTLTGGRNADEQQQQLS 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               + I TPGR+L     G+L +     LV+DEADR++DMGF P IQ IT+ +P  RQ+
Sbjct: 117 TAPQIAIATPGRLLALIKSGELELAQCTSLVLDEADRLIDMGFWPDIQAITAALPTKRQS 176

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL   +E  L NPK+I  +  +S  E IE        + SK  AL+   L 
Sbjct: 177 LLFSATLPPELVSQAETLLSNPKKITTHKENSVVEAIEETLYLVN-KGSKAQALIA--LL 233

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +Q+     ++F   K N   L   L K   SV A+HGN  Q  R + L +FK G  ++++
Sbjct: 234 NQNPWPQVLVFIGAKDNADALTKRLNKAKISVSALHGNKSQEERAQALDSFKNGDTRVLI 293

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+ I  +  V NF++P  A  Y+HR+GRT RAG  G A +LV+  +  ++ AI
Sbjct: 294 ATDVMARGIHIDQLPIVINFELPPHAATYVHRVGRTARAGSTGCAISLVSHSETDYLTAI 353

Query: 361 EKLIEKKV 368
             L  K +
Sbjct: 354 RTLTNKTL 361


>gi|29829640|ref|NP_824274.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680]
 gi|29606748|dbj|BAC70809.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 759

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 133/346 (38%), Positives = 205/346 (59%), Gaps = 12/346 (3%)

Query: 31  TIPLVLQRHDVCGIAQTGTGKTASFVLPML---TI---LEKGRAR----VRMPRTLILEP 80
           T+P+ L   DV G A+TGTGKT  F LP+L   T+   +E GRAR       P+ L++ P
Sbjct: 2   TLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRARPEQLTDAPQALVVVP 61

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TREL  QV ++    GK  N+ V  + GG  +E Q + L++G DV++ TPGR+LD   + 
Sbjct: 62  TRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGVDVIVGTPGRLLDLAGQK 121

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200
           KL + +I+ LV+DEAD MLD+GF+P ++ I +++P  RQT+LFSATM   +  ++  ++ 
Sbjct: 122 KLDLKHIKALVLDEADEMLDLGFLPDVEKIINMLPARRQTMLFSATMPGAVIGLARRYMS 181

Query: 201 NPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
            P  I    P     T+ +     Y A    K  ++ ++LQ+ D     ++FC  K+   
Sbjct: 182 QPTHIRATAPDDEGATVRNTAQFIYRAHNMDKPEMVSRILQA-DGRGLAMVFCRTKRTAA 240

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
           +L   L+++GF+  A+HG++ Q +R + L  F+ G + ++V +D+AARG+D+  V HV N
Sbjct: 241 DLADQLQQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVIN 300

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +  P   + Y+HRIGRTGRAG  G A TLV  +DI     I K ++
Sbjct: 301 YQSPEDEKTYLHRIGRTGRAGAKGIAITLVDWDDIPRWQLINKALD 346


>gi|260802690|ref|XP_002596225.1| hypothetical protein BRAFLDRAFT_276047 [Branchiostoma floridae]
 gi|229281479|gb|EEN52237.1| hypothetical protein BRAFLDRAFT_276047 [Branchiostoma floridae]
          Length = 924

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 149/449 (33%), Positives = 245/449 (54%), Gaps = 21/449 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + +   G+S KV+  +   G+ KPTPIQ + IP+++   D+ GIA+TG+GKT +F++PM 
Sbjct: 237 LHWVQSGVSKKVLACLKKHGFEKPTPIQAQAIPVIMSGRDMIGIAKTGSGKTLAFLIPMF 296

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +   R       P  +I+ PTRELA Q+    +K+ ++ NL V  + GG     Q  +
Sbjct: 297 RHILDQRPLEDTEGPIGVIMTPTRELALQITKECKKFTRHMNLKVVCVYGGTGISEQIAE 356

Query: 119 LERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           L+RGA+++ICTPGR++D    N G++  +     LV+DEADRM DMGF P + +I + V 
Sbjct: 357 LKRGAEIIICTPGRMIDMLAANNGRVTNLRRCTYLVLDEADRMFDMGFEPQVMHIVNSVR 416

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCAL 234
             RQT++FSAT    ++ ++   LQ P  ++V   S     +E H  V    Q   K   
Sbjct: 417 PDRQTVMFSATFPRNMEALARKVLQKPIEVQVGGRSVVCSDVEQHVIVLEEEQ---KFFK 473

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L +LL +     + ++F  +++    L   L K  +S  ++HG IDQ  R  I+++FK G
Sbjct: 474 LLELLGNYQEKGSVLVFVERQEVADTLLKDLLKAAYSCLSLHGGIDQYDRDSIINDFKSG 533

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+L+VA+ +AARGLD+  +  V N+D PN  E+Y+HR+GRTGRAG  G A+T + ++  
Sbjct: 534 NIRLLVATSVAARGLDVKQLILVINYDCPNHYEDYVHRVGRTGRAGNKGYAYTFITEDQG 593

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH--NHARKNNPIPQKSTGFDRRKKN 412
           ++   + K +E         LS    P E +++     N  +      +K++GF  +   
Sbjct: 594 RYAGDVIKALE---------LSERPVPEEVLNLWTEYVNRQKAEGKAVKKTSGFTGKGFK 644

Query: 413 YSSQKSHIPLKESEKISKLQQDIQENDAD 441
           +   +  +   E  K+ K    +Q++D +
Sbjct: 645 FDETEQALA-DERRKLQKAALGLQDSDEE 672


>gi|317152644|ref|YP_004120692.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942895|gb|ADU61946.1| DEAD/DEAH box helicase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 551

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 211/364 (57%), Gaps = 11/364 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
           DF +LGLS + + A+   G+  PTPIQ +TIPL+LQ   D+ G AQTGTGKTA+F LP++
Sbjct: 3   DFKELGLSEETLAALESKGFTCPTPIQERTIPLLLQGAVDIVGQAQTGTGKTAAFGLPII 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               +   RV+    L+L PTRELA QVAD          + V  + GG     Q K L+
Sbjct: 63  ETAVENAKRVQ---ALVLTPTRELAIQVADEINSLKGKKRIRVLPVYGGQAIHMQLKALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGRI+DH  RG L ++ ++  V+DEAD M +MGF+  ++ I       R+T
Sbjct: 120 SGVDVVVGTPGRIMDHLKRGTLHLDELDFFVLDEADEMCNMGFVDDVREILKSANTDRRT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
           LLFSATM  E+ ++++ F+ + + I V    +     +  F  VA   ++   C ++   
Sbjct: 180 LLFSATMPHEVMRIAKEFMGDYELITVKAEKNDIPLTKQVFHEVADSDRFEALCRVV--- 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               +    G++F   + +   +   L ++G+    IHG++ Q  R +IL  FK+  + +
Sbjct: 237 --DAEPDFYGLVFTRTRADADRVASRLTERGYPAEPIHGDLSQARREEILGRFKKRLVTI 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+PD+ HV NF +P   + ++HR GRTGRAG+ G A +L+A  + + + 
Sbjct: 295 LVATDVAARGIDVPDLTHVVNFALPQDPQTFVHRTGRTGRAGKEGVAISLIAPSEFRRLM 354

Query: 359 AIEK 362
            I K
Sbjct: 355 FITK 358


>gi|16765963|ref|NP_461578.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62181218|ref|YP_217635.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161612638|ref|YP_001586603.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167553669|ref|ZP_02347416.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167994856|ref|ZP_02575946.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232171|ref|ZP_02657229.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168238338|ref|ZP_02663396.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168245094|ref|ZP_02670026.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261356|ref|ZP_02683329.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168468057|ref|ZP_02701894.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168823169|ref|ZP_02835169.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194444674|ref|YP_002041910.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194451369|ref|YP_002046652.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194469312|ref|ZP_03075296.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736243|ref|YP_002115655.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197251182|ref|YP_002147547.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197263960|ref|ZP_03164034.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198245924|ref|YP_002216658.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200389167|ref|ZP_03215779.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204929439|ref|ZP_03220513.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205353686|ref|YP_002227487.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857997|ref|YP_002244648.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224584498|ref|YP_002638296.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238912708|ref|ZP_04656545.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|16421193|gb|AAL21537.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|62128851|gb|AAX66554.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161362002|gb|ABX65770.1| hypothetical protein SPAB_00333 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403337|gb|ACF63559.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194409673|gb|ACF69892.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194455676|gb|EDX44515.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711745|gb|ACF90966.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195628861|gb|EDX48275.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197214885|gb|ACH52282.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197242215|gb|EDY24835.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197288867|gb|EDY28240.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197940440|gb|ACH77773.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199606265|gb|EDZ04810.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321158|gb|EDZ06358.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205273467|emb|CAR38444.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205321947|gb|EDZ09786.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327350|gb|EDZ14114.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333649|gb|EDZ20413.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336132|gb|EDZ22896.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205340544|gb|EDZ27308.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349536|gb|EDZ36167.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709800|emb|CAR34152.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224469025|gb|ACN46855.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261247841|emb|CBG25670.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267994784|gb|ACY89669.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159194|emb|CBW18709.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913637|dbj|BAJ37611.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320085536|emb|CBY95315.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225998|gb|EFX51051.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322613360|gb|EFY10302.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620436|gb|EFY17301.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625096|gb|EFY21925.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629460|gb|EFY26236.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633847|gb|EFY30586.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635453|gb|EFY32164.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639871|gb|EFY36550.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644243|gb|EFY40787.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649935|gb|EFY46355.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654882|gb|EFY51199.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658190|gb|EFY54456.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322661738|gb|EFY57956.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669719|gb|EFY65865.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673274|gb|EFY69379.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322674937|gb|EFY71024.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682960|gb|EFY78978.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685621|gb|EFY81616.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322715706|gb|EFZ07277.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323130981|gb|ADX18411.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323191951|gb|EFZ77189.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200416|gb|EFZ85497.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201315|gb|EFZ86382.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208386|gb|EFZ93326.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211538|gb|EFZ96376.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215970|gb|EGA00702.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221751|gb|EGA06159.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225641|gb|EGA09868.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229359|gb|EGA13483.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235326|gb|EGA19410.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237488|gb|EGA21551.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245243|gb|EGA29244.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246468|gb|EGA30449.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323254001|gb|EGA37823.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259051|gb|EGA42699.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261974|gb|EGA45539.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267757|gb|EGA51238.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269684|gb|EGA53136.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624414|gb|EGE30759.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326628791|gb|EGE35134.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332989572|gb|AEF08555.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 444

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 138/353 (39%), Positives = 206/353 (58%), Gaps = 4/353 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  
Sbjct: 6   FSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT+
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTM 185

Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  D ++  +E  L++P  +  N PS+      H +      +  K ALL+ LL+
Sbjct: 186 LFSATLEGDAIKDFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADNFEHKVALLKHLLK 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     I+F  +++ V  L  +L   G + C + G + Q  R + +    +G + ++V
Sbjct: 245 -QDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           A+D+AARG+DIPDV HV NFD+P   + Y+HRIGRTGRAGR G A +LV   D
Sbjct: 304 ATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHD 356


>gi|194743932|ref|XP_001954452.1| GF16725 [Drosophila ananassae]
 gi|190627489|gb|EDV43013.1| GF16725 [Drosophila ananassae]
          Length = 693

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 129/347 (37%), Positives = 205/347 (59%), Gaps = 4/347 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG--- 66
           P ++  V+  G+ KP+PIQ +  P++L+ HD+ GIAQTGTGKT +F+LP +   E     
Sbjct: 276 PDLLAEVMKQGFSKPSPIQAQAWPILLKGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSVP 335

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTRELA Q+    +KY    N+    + GG     Q   +ERGA+++
Sbjct: 336 RGQRGGPNVLVLAPTRELALQIEMEVKKYSFR-NMRAVCVYGGGDRRMQISDVERGAEII 394

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           ICTPGR+ D      + +++I  LV+DEADRMLDMGF P I+ +   +   RQT++ SAT
Sbjct: 395 ICTPGRLNDLVQANVINVSSITYLVLDEADRMLDMGFEPQIRKVLLDIRPDRQTIMTSAT 454

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
               ++++++++++NP ++ V +    A       +      ++K   ++  +++     
Sbjct: 455 WPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIELLQDDAEKFQTIKSFVKNMRKTD 514

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+FC +K    +L   L   GF    IHGN DQ  R + +++ K G ++++VA+D+A+
Sbjct: 515 KIIVFCGRKARADDLSSDLTLDGFCTQCIHGNRDQSDREQAIADIKSGAVRILVATDVAS 574

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + + V +ED
Sbjct: 575 RGLDIEDISHVINYDFPRNIEEYVHRVGRTGRAGRKGTSISFVTRED 621


>gi|56412534|ref|YP_149609.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361469|ref|YP_002141105.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56126791|gb|AAV76297.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197092945|emb|CAR58375.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 444

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 141/366 (38%), Positives = 212/366 (57%), Gaps = 4/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  
Sbjct: 6   FSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT+
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTM 185

Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  D ++  +E  L++P  +  N PS+      H +      +  K ALL+ LL+
Sbjct: 186 LFSATLEGDAIKDFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADNFEHKVALLKHLLK 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     I+F  +++ V  L  +L   G + C + G + Q  R + +    +G + ++V
Sbjct: 245 -QDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DIPDV HV NFD+P   + Y+HRIGRTGRAGR G A +LV   D   +  I
Sbjct: 304 ATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLLLKI 363

Query: 361 EKLIEK 366
            + IE+
Sbjct: 364 GRYIEE 369


>gi|322515347|ref|ZP_08068343.1| ATP-dependent RNA helicase DeaD [Actinobacillus ureae ATCC 25976]
 gi|322118634|gb|EFX90856.1| ATP-dependent RNA helicase DeaD [Actinobacillus ureae ATCC 25976]
          Length = 445

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 130/366 (35%), Positives = 213/366 (58%), Gaps = 4/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F +L L+P+++ A+   GY +PT +Q +TIP  L   D+ G A TGTGKTA+F+LP +  
Sbjct: 10  FEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQN 69

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R ++  PR LIL PTRELA QVA+  + + +   L++A + GG+ ++   +    
Sbjct: 70  LLDYPRRKLGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEVFNS 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR++ +          +EIL+ DEADRML MGF    + I +   + + T 
Sbjct: 130 NQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKHTW 189

Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  EL    ++  L NP +I+        + I+  +         K  LL +L+ 
Sbjct: 190 LFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHA-DNLEHKTKLLARLIS 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M+  I+F  ++++V  L  +L K+G     + G++ Q  R + ++  K+G + ++V
Sbjct: 249 TM-KMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDGVVNVLV 307

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV +V NFD+P  A+ Y+HR+GRT RAG+ G A +LV   D K +  I
Sbjct: 308 ATDVAARGIDIDDVDYVINFDLPYSADTYLHRVGRTARAGKKGSAISLVEAHDYKLLGKI 367

Query: 361 EKLIEK 366
           ++  E+
Sbjct: 368 KRYTEE 373


>gi|321459317|gb|EFX70372.1| hypothetical protein DAPPUDRAFT_328137 [Daphnia pulex]
          Length = 738

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 153/405 (37%), Positives = 222/405 (54%), Gaps = 35/405 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ L+  +   +    Y KPTP+Q   IP++L R DV   AQTG+GKTA+F++P+L  
Sbjct: 223 FEDVKLTEIIRSNIALTRYDKPTPVQKYAIPIILARRDVMACAQTGSGKTAAFLVPILNQ 282

Query: 62  ILEKGRA------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
           + E+G              R + P  L+L PTRELA Q+ D  +K+     +   ++ GG
Sbjct: 283 LFERGPVVNQSAGQRSYGRRKQYPLALVLAPTRELATQIYDEAKKFAYRSRVRPCVVYGG 342

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q + LERG  +L+ TPGR++D   RGK+ + +   LV+DEADRMLDMGF P I+ 
Sbjct: 343 ADVRQQMQDLERGCHLLVATPGRLVDMLERGKIGLEHCNFLVLDEADRMLDMGFEPQIRR 402

Query: 170 ITS--LVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I     +P T  RQTL+FSAT   E+Q ++ +FL+N   + V    ST+E I    V   
Sbjct: 403 IVEQDTMPKTGDRQTLMFSATFPKEIQMLARDFLENYIFLAVGRVGSTSENITQKIVWV- 461

Query: 226 AQYSKKCALLQQL-------------LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
            ++ K+  LL  L              +S +  +  ++F   K+    L   L + G+ V
Sbjct: 462 EEHDKRSFLLDLLNASGLNKFNSQVETESTEHEQLTLVFVETKRGADALEEFLYRDGYPV 521

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
            +IHG+  QR R   L  F+ G   ++VA+ +AARGLDIP V HV NFD+P+  E Y+HR
Sbjct: 522 TSIHGDRSQREREDALKRFRSGKTPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHR 581

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHI-DAIEKLIEKKVD---WLNG 373
           IGRTGR G  G A +   +++   I D +E +IE K +   WL G
Sbjct: 582 IGRTGRMGNLGVATSFFNEKNRNLIRDLVELIIETKQELPSWLEG 626


>gi|171061032|ref|YP_001793381.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170778477|gb|ACB36616.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 417

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 140/373 (37%), Positives = 216/373 (57%), Gaps = 9/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL P +V A    G ++PTPIQ + IP +L+  DV G A+TG+GKTA+F LP+L
Sbjct: 1   MSFVSLGLLPALVSAAQAHGLLRPTPIQAEAIPAILRGVDVLGAARTGSGKTAAFALPLL 60

Query: 61  TILEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQN 116
             L+   G  R R  + L+L PTRELA QV +  E    +      + +  GG+    Q 
Sbjct: 61  QRLQPCLGEWR-RRTQALVLVPTRELALQVGEVLEDLSSHLVEPPRIVIAFGGVSINPQM 119

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GA+V++ TPGR+LD      L ++ +  LV+DEADR+LD+GF   +  I + +P 
Sbjct: 120 MALRGGAEVVVATPGRLLDLLGHNALRIDTLNTLVLDEADRLLDLGFADELARIRAQLPP 179

Query: 177 TR-QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            R Q L FSAT  +E+Q +++ +L  P RIE+   +  AET +    A     +++  LL
Sbjct: 180 RRFQHLFFSATFPEEVQALADEWLHEPVRIELQ--ADAAETPDITQRAIEVDATRRTPLL 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++LL ++   +  ++F   +     L H L + G    A+HG + Q +R   L+ F++  
Sbjct: 238 RKLL-AEPGWEQALVFVATRYATELLAHKLHRSGIKAAALHGELSQGARNAALAAFRQRE 296

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARG+DI  +  V NFD+P   ++Y HRIGRTGRAG  G+A + ++ +   
Sbjct: 297 LQVLVATDVAARGIDIARLPVVVNFDLPRSTDDYTHRIGRTGRAGEVGQAVSFISADTEA 356

Query: 356 HIDAIEKLIEKKV 368
           H   IEK  +++V
Sbjct: 357 HFRLIEKRQQQRV 369


>gi|66047019|ref|YP_236860.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
 gi|63257726|gb|AAY38822.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
 gi|330971079|gb|EGH71145.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 445

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 138/369 (37%), Positives = 214/369 (57%), Gaps = 5/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 2   FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G A+VR+  R +IL PTRELA Q     E++ +   +   L+ GG  F+ Q   L +
Sbjct: 62  L-IGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+LI TPGR+L+  N G L + ++E+LV+DEADRMLDMGF   ++ +        QT+
Sbjct: 121 VPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 180

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT     L+++    L++P+ ++VN+ S  A    H  +       K+  L    L 
Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVL--NWLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +T +  IIF N K     L   L    +    +HG+ DQ+ R   +   K+G  ++MV
Sbjct: 239 ANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V NFD+P   ++Y+HR+GRTGRAG  G A +L+   D   + ++
Sbjct: 299 ATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSV 358

Query: 361 EKLIEKKVD 369
           E+ +++  +
Sbjct: 359 ERYLKQSFE 367


>gi|163749734|ref|ZP_02156980.1| putative ATP-dependent RNA helicase [Shewanella benthica KT99]
 gi|161330547|gb|EDQ01505.1| putative ATP-dependent RNA helicase [Shewanella benthica KT99]
          Length = 431

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 139/372 (37%), Positives = 218/372 (58%), Gaps = 10/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P+++  +    Y+ PT +Q KTIP VL   D+   A TG+GKTA+F LPML  
Sbjct: 15  FEQLGLIPELLKRLTLLEYLNPTLVQGKTIPAVLSGRDLLAGAITGSGKTAAFALPMLQK 74

Query: 63  LEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNK 117
           L K  A+V        L+L PTRELA QVA++F+ YG+     L +  + GG+    Q  
Sbjct: 75  LAKSSAKVSKGNQVSGLVLVPTRELAQQVAESFKSYGQLIKPRLKIEAVFGGVSANTQML 134

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +  GADVL+ TPGR+LD  +   + +++++ LV+DEADRML +GF   +  + +L+P  
Sbjct: 135 AMRGGADVLVATPGRLLDLISSNAIKLDDVKTLVLDEADRMLSLGFTEELNQVLALLPKH 194

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTLLFSAT  +E++ +++N L  P  I++ +   T  T++          ++K ALL  
Sbjct: 195 KQTLLFSATFPEEVKTLTDNLLSTPVEIQIQSEEQT--TLKQQVYTV--NRNRKTALLAH 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++  D  +  ++F + K     L   L K G +    H +  Q +R K+L  FK G   
Sbjct: 251 LIKEND-WRQVLVFASAKNTCNRLEQKLAKAGIAAQIFHSDKSQGARTKVLEAFKNGETH 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARG+DI  +  V N+++P    +Y+HRIGR+GRAG  G A +L++ ++ +H 
Sbjct: 310 VLIATDIAARGIDIDKLPVVINYELPRSPVDYMHRIGRSGRAGEAGLALSLISHDEYQHF 369

Query: 358 DAIEKLIEKKVD 369
             IEK  + K+D
Sbjct: 370 KLIEKKNKIKLD 381


>gi|226944026|ref|YP_002799099.1| ATP-dependent DEAD/DEAH box helicase [Azotobacter vinelandii DJ]
 gi|226718953|gb|ACO78124.1| ATP-dependent DEAD/DEAH box helicase [Azotobacter vinelandii DJ]
          Length = 439

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 137/369 (37%), Positives = 215/369 (58%), Gaps = 5/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+   L  +++ A+ +  +V+PTP+Q   IP  L+ HD+  IA+TG+GKTA+FVLP+L  
Sbjct: 2   FSQFALHERLLKALAELNFVEPTPVQAAAIPPALEGHDLRVIARTGSGKTAAFVLPLLNG 61

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++   R RV + R LIL PTRELA Q     E++ +   +   L+ GG  F+ Q   L +
Sbjct: 62  LIGDARPRVSI-RALILLPTRELAQQTLKEVERFSQFTFIKSGLVTGGENFKVQAALLRK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+LI TPGR+L+H N G L + ++E+LV+DEADRMLDMGF   +Q +       RQTL
Sbjct: 121 VPDILIGTPGRLLEHLNAGHLDLRDVEVLVLDEADRMLDMGFAEDVQRLVESCANRRQTL 180

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT     L+++    L+ P+ + +N     +ET     V T    + K  L+  LL+
Sbjct: 181 LFSATTGGSGLREMVAKVLREPRHLMLNAVGELSETTRQQIV-TADDPAHKERLVHWLLE 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++ T +  I+F N +     L   L   G     +HG  DQ+ R   +   ++G  +++V
Sbjct: 240 NE-TYRKAIVFTNTRAQADRLYGHLVAAGHKAFVLHGEKDQKDRKLAIERLRQGGARVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V NFD+P   + Y+HR+GRTGRAG  G A +L+   D   + ++
Sbjct: 299 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRVGRTGRAGAEGLAVSLICHNDWNLMSSV 358

Query: 361 EKLIEKKVD 369
           E+ ++++ +
Sbjct: 359 ERYLKQRFE 367


>gi|317491008|ref|ZP_07949444.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920555|gb|EFV41878.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 442

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 146/390 (37%), Positives = 223/390 (57%), Gaps = 12/390 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKT +++LP+L 
Sbjct: 5   NFSELELDERLLDALRDKGYDRPTAIQAAAIPPAMDGRDVLGSAPTGTGKTVAYLLPVLQ 64

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR L+L PTRELA QVA+   +  K+ NL +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRVLVLTPTRELAMQVAEQAIELAKHTNLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I +   + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQT 184

Query: 181 LLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT+  D +++ SE  LQ+P  IE +      + I+  +         K  LL  LL
Sbjct: 185 MLFSATLEGDAIKEFSERLLQDPVEIEADPSRRERKKIQQWYYRA-DTLEHKTKLLCHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +  K+ +IF  +++ V  L   L + G + C + G + Q  R + +    +G + ++
Sbjct: 244 KEPEVTKS-VIFVRKRERVHELVGWLREAGINSCYLEGEMVQAKRNEAMKRMLDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIPD+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDVAARGLDIPDISHVFNFDMPRTADTYLHRIGRTGRAGRKGIAISLVEAHDHLLLGK 362

Query: 360 IEKLIEKK-----VDWLNGDLSSLNPPLEK 384
           I + +E++     VD L     +  PP EK
Sbjct: 363 ISRYVEEQIKSRVVDELR---PTTKPPSEK 389


>gi|124268102|ref|YP_001022106.1| putative ATP-dependent RNA helicase [Methylibium petroleiphilum
           PM1]
 gi|124260877|gb|ABM95871.1| putative ATP-dependent RNA helicase [Methylibium petroleiphilum
           PM1]
          Length = 516

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 140/391 (35%), Positives = 223/391 (57%), Gaps = 27/391 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
           +F  LGL+  ++ AV   G+  PT +Q + IP  L+  D    +QTG+GKTA+F+LP+L 
Sbjct: 75  NFESLGLAAPLLHAVTQLGFTAPTSVQEQAIPAALKGGDWMVSSQTGSGKTAAFLLPVLH 134

Query: 61  TILEKGRA---RVRMPRTLILEPTRELAAQVA-----------DNFEKYGKNY------- 99
            +L  G A   RV  PR ++L PTRELA QV+           +      K +       
Sbjct: 135 RLLNAGAAEQTRVATPRAVVLCPTRELAQQVSADAIDLMRGVGEALRAEAKQHPLRDAAR 194

Query: 100 NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159
            L +A ++GG+PF  Q   L RGA +++ TPGR+LD  +RG++ ++  ++LV+DEADRML
Sbjct: 195 GLRIATVVGGMPFGKQLFDL-RGAQLVVATPGRLLDLHSRGQIRLDATQVLVVDEADRML 253

Query: 160 DMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
           D+GF   +  I        QT++FSAT    +  ++   +++P R+E+ T       I  
Sbjct: 254 DLGFAEDLAAIADATAQRDQTMMFSATFAPRIMALASKLMRSPGRLELATAHDVHSDITQ 313

Query: 220 CFVATYAQ-YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
                +A     K ALL+  L+  + +   ++F + + +   +  +L++QG S  A+HG 
Sbjct: 314 TL--HWADNMGHKQALLEHWLRDAE-VDQAVVFASTQVDTEAIAEALQQQGHSAVALHGA 370

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
           + Q  R + L N ++G ++++VA+D+AARGLD+P + HV NF +P +AE+Y+HRIGRTGR
Sbjct: 371 MPQAVRNRRLQNVRDGHVRVLVATDVAARGLDVPSISHVINFGLPMKAEDYVHRIGRTGR 430

Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           AGR G A T+    +   I AIE    + ++
Sbjct: 431 AGRSGTAITIAEHRERGKIRAIEAFTRQPIE 461


>gi|291239420|ref|XP_002739621.1| PREDICTED: Rs1-like [Saccoglossus kowalevskii]
          Length = 563

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 137/358 (38%), Positives = 206/358 (57%), Gaps = 1/358 (0%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           + LS  ++ A+    +V PTPIQ+ TIP+ L   D+C  A TGTGKTA+F+LP+L  L  
Sbjct: 1   MNLSRPLLKAINAMNFVHPTPIQVATIPVALLGKDICACAATGTGKTAAFMLPVLERLLY 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
              +  + R L+L PTREL  QV     +  +   +   L +GG+  + Q   L +G D+
Sbjct: 61  KPKQAAVTRVLVLVPTRELGIQVHSVTRQLAQFTEIDSCLAVGGLDVKLQEAVLRQGPDI 120

Query: 126 LICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +I TPGR++DH  N     ++NIEIL++DEADRMLD  F   ++ I  +   TRQT+LFS
Sbjct: 121 VIATPGRLIDHLHNAPSFSLSNIEILILDEADRMLDEYFEEQMKEIIRMCSITRQTMLFS 180

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           ATMTDE++ +    L+NP R+ +N  +  A  +   F+            +   L S+  
Sbjct: 181 ATMTDEVKDLVAVSLKNPVRLFINENTDVAYNLRQEFIRIRENREGDREAIAAALCSRTF 240

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             + I+F   KK    L   L   G +V  +HGN+ Q  R++ L  FKE  I +M+A+DL
Sbjct: 241 HDHVIVFVQTKKQCHRLHIILGMLGLNVGELHGNLSQTQRLETLRRFKESNIDIMLATDL 300

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           AARGLDI  +  + NF +PN  ++Y+HR+GRT RAG+ G++ +L  +++ K +  I K
Sbjct: 301 AARGLDIEGIKTIINFTMPNTVKHYVHRVGRTARAGKSGRSVSLCGEKERKMLKEIVK 358


>gi|237798870|ref|ZP_04587331.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021724|gb|EGI01781.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 445

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 138/369 (37%), Positives = 214/369 (57%), Gaps = 5/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 2   FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G A+VR+  R +IL PTRELA Q     E++ +   +   L+ GG  F+ Q   L +
Sbjct: 62  L-IGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+LI TPGR+L+  N G L + ++E+LV+DEADRMLDMGF   ++ +        QT+
Sbjct: 121 VPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 180

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT     L+++    L++P+ ++VN+ S  A    H  +       K+  L    L 
Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVL--NWLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +T +  IIF N K     L   L    +    +HG+ DQ+ R   +   K+G  ++MV
Sbjct: 239 ANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V NFD+P   ++Y+HR+GRTGRAG  G A +L+   D   + ++
Sbjct: 299 ATDVAARGLDVEGLDMVVNFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSV 358

Query: 361 EKLIEKKVD 369
           E+ +++  +
Sbjct: 359 ERYLKQSFE 367


>gi|66814184|ref|XP_641271.1| hypothetical protein DDB_G0280147 [Dictyostelium discoideum AX4]
 gi|74897202|sp|Q54VT4|DDX47_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx47; AltName:
           Full=DEAD box protein 47
 gi|60469306|gb|EAL67300.1| hypothetical protein DDB_G0280147 [Dictyostelium discoideum AX4]
          Length = 546

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 148/419 (35%), Positives = 232/419 (55%), Gaps = 25/419 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LG+ P+++ A    G+ KP  IQ ++IP  L+  D+ G+AQTG+GKTA+FV+P+L
Sbjct: 119 VTFESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVL 178

Query: 61  TILEKGRARVRMPRTLI---LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      +  P+ L    L PTRELA Q+AD F   G    +   +L+GGI   +Q+ 
Sbjct: 179 QKL------LEAPQGLFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSL 232

Query: 118 KLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            L +   V++ +PGR+L H    K   + +I+  ++DEADR+    F   + NI  ++P 
Sbjct: 233 ALAKKPHVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKVIPK 292

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R T LFSATMT ++ K+    L NP +++V +   T +T+   ++    +Y K C L  
Sbjct: 293 ERNTYLFSATMTSKVAKLQRASLVNPVKVQVASKYQTVDTLLQQYLFVPFKY-KDCYLAY 351

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L +    +   IIF +   +   +   L   GF    I+G++DQ  R+  L+ FK+GT 
Sbjct: 352 ILNELAGNLT--IIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTK 409

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLDIP V  V N+DVP  ++ Y+HR+GRT RAG  G+A T+V + D++ 
Sbjct: 410 SILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEM 469

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
              IE +++KK+D       ++   LE++   Q  H    N +         + KNYSS
Sbjct: 470 YQRIEFVLKKKLDSFPCQEETVLIFLERV---QEAHRIATNEL---------KDKNYSS 516


>gi|301384847|ref|ZP_07233265.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059212|ref|ZP_07250753.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           K40]
 gi|302130851|ref|ZP_07256841.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|331017330|gb|EGH97386.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 445

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 138/369 (37%), Positives = 214/369 (57%), Gaps = 5/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 2   FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G A+VR+  R +IL PTRELA Q     E++ +   +   L+ GG  F+ Q   L +
Sbjct: 62  L-IGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+LI TPGR+L+  N G L + ++E+LV+DEADRMLDMGF   ++ +        QT+
Sbjct: 121 VPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 180

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT     L+++    L++P+ ++VN+ S  A    H  +       K+  L    L 
Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVL--NWLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +T +  IIF N K     L   L    +    +HG+ DQ+ R   +   K+G  ++MV
Sbjct: 239 ANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V NFD+P   ++Y+HR+GRTGRAG  G A +L+   D   + ++
Sbjct: 299 ATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSV 358

Query: 361 EKLIEKKVD 369
           E+ +++  +
Sbjct: 359 ERYLKQSFE 367


>gi|161502252|ref|YP_001569364.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863599|gb|ABX20222.1| hypothetical protein SARI_00280 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 444

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 140/354 (39%), Positives = 209/354 (59%), Gaps = 6/354 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  
Sbjct: 6   FSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAIQVADHARELAKHTHLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT+
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTM 185

Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVN-TPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LFSAT+  D ++  +E  L++P  +EV+ TPS+      H +      +  K ALL+ LL
Sbjct: 186 LFSATLEGDAIKDFAERLLEDP--VEVSATPSTRERKKIHQWYYRADNFEHKVALLKHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + QD     I+F  +++ V  L  +L   G + C + G + Q  R + +    +G + ++
Sbjct: 244 K-QDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+AARG+DIPDV HV NFD+P   + Y+HRIGRTGRAGR G A +LV   D
Sbjct: 303 VATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHD 356


>gi|18407327|ref|NP_566099.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|75318047|sp|O22907|RH24_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 24
 gi|16323192|gb|AAL15330.1| At2g47330/T8I13.17 [Arabidopsis thaliana]
 gi|20196880|gb|AAB63833.2| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
 gi|21700913|gb|AAM70580.1| At2g47330/T8I13.17 [Arabidopsis thaliana]
 gi|330255734|gb|AEC10828.1| DEAD-box ATP-dependent RNA helicase 24 [Arabidopsis thaliana]
          Length = 760

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 140/356 (39%), Positives = 209/356 (58%), Gaps = 4/356 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D G S +++ A+    Y KPT IQ + +P+VL   DV GIA+TG+GKTA+FVLPM+  
Sbjct: 230 FEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVH 289

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++    R   P  +I  PTRELA Q+    +K+ K Y L V+ + GG+    Q K+L+
Sbjct: 290 IMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELK 349

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G ++++ TPGR++D      L M     LV+DEADRM D+GF P +++I   +   RQT
Sbjct: 350 AGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQT 409

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  +++K++   L +P R+ V       E I        +   K   LL++L  
Sbjct: 410 LLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEKLPG 469

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D   + ++F ++K  V  +   L    F V A+HG+ DQ SRM+ L  FK G   +++
Sbjct: 470 MIDE-GDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLI 528

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIK 355
           A+D+AARGLDI  +  V N+D+    + ++HRIGRTGRAG R G A+TLV + + +
Sbjct: 529 ATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREAR 584


>gi|71736956|ref|YP_273717.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|289647906|ref|ZP_06479249.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298488177|ref|ZP_07006214.1| ATP-dependent RNA helicase SrmB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71557509|gb|AAZ36720.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157456|gb|EFH98539.1| ATP-dependent RNA helicase SrmB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330869381|gb|EGH04090.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330988677|gb|EGH86780.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331010277|gb|EGH90333.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 445

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 138/369 (37%), Positives = 214/369 (57%), Gaps = 5/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 2   FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G A+VR+  R +IL PTRELA Q     E++ +   +   L+ GG  F+ Q   L +
Sbjct: 62  L-IGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+LI TPGR+L+  N G L + ++E+LV+DEADRMLDMGF   ++ +        QT+
Sbjct: 121 VPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 180

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT     L+++    L++P+ ++VN+ S  A    H  +       K+  L    L 
Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVL--NWLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +T +  IIF N K     L   L    +    +HG+ DQ+ R   +   K+G  ++MV
Sbjct: 239 ANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V NFD+P   ++Y+HR+GRTGRAG  G A +L+   D   + ++
Sbjct: 299 ATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSV 358

Query: 361 EKLIEKKVD 369
           E+ +++  +
Sbjct: 359 ERYLKQSFE 367


>gi|291280174|ref|YP_003497009.1| ATP-dependent RNA helicase DEAD/DEAH box family [Deferribacter
           desulfuricans SSM1]
 gi|290754876|dbj|BAI81253.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Deferribacter
           desulfuricans SSM1]
          Length = 525

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 134/359 (37%), Positives = 212/359 (59%), Gaps = 11/359 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F  LG+S  ++ A+   G+ +PT IQ   IP +L    D+   AQTGTGKTA+F +P++
Sbjct: 6   EFEKLGVSKSILEALKKKGFEEPTDIQKLVIPKILNSDKDIVAQAQTGTGKTAAFGIPLI 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ++++ ++ V+    LIL PTRELA QVA+          L +  + GG   E Q K+L+
Sbjct: 66  EMIDRKKSGVK---CLILTPTRELANQVAEEINSLKGRRKLKIVPVYGGQSMELQLKRLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+++ TPGRILDH  R  L ++ I+  ++DEAD ML+MGFI  I+ I    P  R+ 
Sbjct: 123 EGADIVVGTPGRILDHLKRKSLDISKIDFFILDEADEMLNMGFIDDIKTIFRYTPENRRV 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+  +++ F+++ + I+V+    T    E  +     +        + L +
Sbjct: 183 LLFSATMPREILNLAKTFMKDYELIKVDAKQLTTSLTEQIYFEVREEDK-----FEALCR 237

Query: 241 SQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +D      G+IFC  K +V  + + L  +G++   +HG++ Q  R +IL  FK   I +
Sbjct: 238 IRDMYPEFYGLIFCRTKVDVDTVANKLIDRGYNAEGLHGDLSQYQRERILHKFKTKRINM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +VA+D+AARG+DI ++ HV N+ +P   E+Y+HRIGRTGRAG+ G A T V   + +++
Sbjct: 298 LVATDVAARGIDIDNLTHVINYSLPQNPESYVHRIGRTGRAGKKGIAITFVTPSEYRNL 356


>gi|20092752|ref|NP_618827.1| ATP-dependent RNA helicase [Methanosarcina acetivorans C2A]
 gi|19918045|gb|AAM07307.1| ATP-dependent RNA helicase [Methanosarcina acetivorans C2A]
          Length = 555

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 136/361 (37%), Positives = 206/361 (57%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F  LGLS   + A+   G+ +PTPIQ K IPL L+   D+ G AQTGTGKT +F  P   
Sbjct: 7   FKALGLSDSTLKALKKKGFEEPTPIQEKVIPLFLKGESDIIGQAQTGTGKTTAFGAP--- 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I+EK   +    + +IL PTRELA QV++       +  L V  + GG     Q + L+ 
Sbjct: 64  IIEKIPEKSGYVQAIILTPTRELAIQVSEELNSIKGDKKLHVVPIYGGQSMTQQLRVLKS 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGRI+DH  R  L + +I   V+DEAD ML+MGFI  I+ I       ++ L
Sbjct: 124 GVDIVVGTPGRIIDHLERKSLDLEHIAYFVLDEADEMLNMGFIDDIKEILKATGPDKRML 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   +  + + ++QN + + +      A+  E  +     Q + K   L +++  
Sbjct: 184 FFSATMPKPILGIVKKYMQNYEHVTIEKEELAAKLTEQIYFEV--QENDKFEALSRIIDI 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D    G++FC  K +   L   L  +G+   A+HG++ Q+ R KIL+ F++  I ++VA
Sbjct: 242 EDEF-YGLVFCRTKTDTGQLAQKLSDRGYEADALHGDLSQQEREKILNKFRKQKINVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T V   + + +  I+
Sbjct: 301 TDVAARGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEFRRLTYIK 360

Query: 362 K 362
           K
Sbjct: 361 K 361


>gi|145628788|ref|ZP_01784588.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
 gi|144979258|gb|EDJ88944.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
 gi|309750162|gb|ADO80146.1| ATP-dependent RNA helicase [Haemophilus influenzae R2866]
          Length = 439

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 136/383 (35%), Positives = 214/383 (55%), Gaps = 6/383 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP L  
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEECDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++        
Sbjct: 66  LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QTL
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  EL    +E  L +P +++        + I   +    +    K  LL + ++
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++  + GI+F  ++++   L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 245 TEEVTR-GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381
           ++  E+  K   L G      PP
Sbjct: 364 KRYTEEILKARILAGLEPRTKPP 386


>gi|253702296|ref|YP_003023485.1| DEAD/DEAH box helicase [Geobacter sp. M21]
 gi|251777146|gb|ACT19727.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
          Length = 381

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 143/385 (37%), Positives = 227/385 (58%), Gaps = 13/385 (3%)

Query: 1   MDFADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M FA LGL P+++ A+ +   + +P PIQ + IP VL+  D+  IA+TG+GKTASF+LP+
Sbjct: 1   MSFASLGLHPELLSAIAEQPEFKRPYPIQSEVIPAVLKGRDLIAIAKTGSGKTASFILPL 60

Query: 60  LTILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQ 115
           L ++    A  R R+ R L+L PTRELAAQ+ +  ++ G +    +    + GG+    Q
Sbjct: 61  LQLIHGQDAGERRRL-RALVLVPTRELAAQIEEVAKQLGSHLEPRVKTGAVFGGVAINPQ 119

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L +G ++LI TPGR+L+   +  + ++++  LV+DEADR+    F   +Q I +L+P
Sbjct: 120 MIQL-KGIELLIATPGRLLELVAKNSVKLSSVATLVLDEADRLYAEDFQDEMQQILALLP 178

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT+  E+++++ + L +P RIE+   +S  E I           S+K  LL
Sbjct: 179 AKRQNLLFSATIPPEVERLAASLLSDPMRIEIEAKASETELISQQIY--LVDSSRKGPLL 236

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + L++S D  K  ++F + +K   N+   L   G S    H  + Q  R   L+ FK G 
Sbjct: 237 RYLIKSGD-WKQVLVFTSSQKRADNVTRKLVANGISASTFHSGMSQGGRTAALAKFKTGE 295

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+DLA+RG+D+  + HV N+++P    +Y HRIGRTGRA   G A TL+  ED+ 
Sbjct: 296 LRVLVATDLASRGIDVQSLPHVVNYELPRSPIDYQHRIGRTGRAETAGVAVTLLCPEDLA 355

Query: 356 HIDAIEKLIEK---KVDWLNGDLSS 377
           H   IEK + +   ++D    DLS+
Sbjct: 356 HFKVIEKRLGQRLARIDTAELDLSA 380


>gi|58268226|ref|XP_571269.1| p68-like protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|74684726|sp|Q5KFM6|DBP2_CRYNE RecName: Full=ATP-dependent RNA helicase DBP2-A
 gi|57227504|gb|AAW43962.1| p68-like protein, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 540

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 140/376 (37%), Positives = 209/376 (55%), Gaps = 15/376 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    ++  +   G+  P+ IQ +  P+ L   D+  IA+TG+GKT SF LP +  
Sbjct: 112 FEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLPAMVH 171

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  LIL PTRELA Q+     K+G++  +    + GG P   Q 
Sbjct: 172 INAQPLLAPGDG----PIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQI 227

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+RG ++ + TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 228 RDLQRGVEICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRP 287

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE--TIEHCFVATYAQYSKKCAL 234
            RQTLLFSAT   E+Q+++ +FL +  ++ + +   TA     +H  V T   + K+  L
Sbjct: 288 DRQTLLFSATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCT--DFDKRSKL 345

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L +        +IF   K+   +L   L   G+   AIHG+  Q  R  +L+ FK G
Sbjct: 346 LSHLEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSG 405

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +M+A+D+A+RGLD+ D+G+V N+D PN  E+YIHRIGRTGRAGR G ++T    ++ 
Sbjct: 406 RSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNS 465

Query: 355 KHI-DAIEKLIEKKVD 369
           K   + ++ L E K D
Sbjct: 466 KAARELVQILRESKAD 481


>gi|58268224|ref|XP_571268.1| p68-like protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|57227503|gb|AAW43961.1| p68-like protein, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 527

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 140/376 (37%), Positives = 209/376 (55%), Gaps = 15/376 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    ++  +   G+  P+ IQ +  P+ L   D+  IA+TG+GKT SF LP +  
Sbjct: 99  FEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLPAMVH 158

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  LIL PTRELA Q+     K+G++  +    + GG P   Q 
Sbjct: 159 INAQPLLAPGDG----PIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQI 214

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+RG ++ + TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 215 RDLQRGVEICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRP 274

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE--TIEHCFVATYAQYSKKCAL 234
            RQTLLFSAT   E+Q+++ +FL +  ++ + +   TA     +H  V T   + K+  L
Sbjct: 275 DRQTLLFSATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCT--DFDKRSKL 332

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L +        +IF   K+   +L   L   G+   AIHG+  Q  R  +L+ FK G
Sbjct: 333 LSHLEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSG 392

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +M+A+D+A+RGLD+ D+G+V N+D PN  E+YIHRIGRTGRAGR G ++T    ++ 
Sbjct: 393 RSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNS 452

Query: 355 KHI-DAIEKLIEKKVD 369
           K   + ++ L E K D
Sbjct: 453 KAARELVQILRESKAD 468


>gi|16761502|ref|NP_457119.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29140801|ref|NP_804143.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213420579|ref|ZP_03353645.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213425267|ref|ZP_03358017.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213585704|ref|ZP_03367530.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213616277|ref|ZP_03372103.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213646345|ref|ZP_03376398.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213854910|ref|ZP_03383150.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|25385254|pir||AD0830 ATP-dependent RNA helicase SrmB [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503802|emb|CAD02792.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29136426|gb|AAO67992.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 444

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 141/366 (38%), Positives = 212/366 (57%), Gaps = 4/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  
Sbjct: 6   FSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT+
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTM 185

Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  D ++  +E  L++P  +  N PS+      H +      +  K ALL+ LL+
Sbjct: 186 LFSATLEGDAIKDFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADNFEHKVALLKHLLK 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     I+F  +++ V  L  +L   G + C + G + Q  R + +    +G + ++V
Sbjct: 245 -QDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DIPDV HV NFD+P   + Y+HRIGRTGRAGR G A +LV   D   +  I
Sbjct: 304 ATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLLLKI 363

Query: 361 EKLIEK 366
            + IE+
Sbjct: 364 GRYIEE 369


>gi|271501630|ref|YP_003334656.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270345185|gb|ACZ77950.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
          Length = 450

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 204/349 (58%), Gaps = 8/349 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTLIL 78
           G+ +PT IQ + IP  ++  DV G A TGTGKTA+++LP+L  +L+  R +   PR LIL
Sbjct: 23  GFSRPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQHLLDFPRKKSGPPRILIL 82

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QVAD       + +L +A + GG+ +    +      DV++ T GR+L +  
Sbjct: 83  TPTRELAMQVADQARALAAHTHLDIATITGGVAYMNHAEVFSENQDVVVATTGRLLQYIK 142

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQKVSEN 197
                   +E L++DEADRMLDMGF   I++I     + +QT+LFSAT+  D +Q  +E 
Sbjct: 143 EENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIQDFAER 202

Query: 198 FLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
            L +P  +E + PS     + ++  + A   Q+  K ALL  LL+  D  ++ I+F  ++
Sbjct: 203 LLNDPAEVEAD-PSRRERKKILQWYYRADDIQH--KTALLSHLLKQPDVTRS-IVFVRKR 258

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           + V  L   L   G   C + G + Q  R + +    EG ++++VA+D+AARGLDI DV 
Sbjct: 259 ERVHELVDWLRSAGIESCYLEGEMVQAKRNEAIKRLSEGRVKVLVATDVAARGLDIQDVS 318

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           HVFNFD+P  ++ Y+HRIGRTGRAGR G A +LV   D   +D I + +
Sbjct: 319 HVFNFDLPRTSDIYLHRIGRTGRAGRKGSAISLVEAHDYLLLDKIGRYL 367


>gi|261339970|ref|ZP_05967828.1| ATP-independent RNA helicase DbpA [Enterobacter cancerogenus ATCC
           35316]
 gi|288317887|gb|EFC56825.1| ATP-independent RNA helicase DbpA [Enterobacter cancerogenus ATCC
           35316]
          Length = 457

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 138/365 (37%), Positives = 215/365 (58%), Gaps = 8/365 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY+  TP+Q   +P +L+  DV   A+TG+GKTA+F L +L  ++ G   +   ++L+L 
Sbjct: 22  GYLTMTPVQAAALPAILEGRDVRVQAKTGSGKTAAFGLGLLQRIDAG---LFQTQSLVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF AQ   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +G + ++ ++ LV+DEADRMLDMGF   I  +    P  RQTLLFSAT  + +  +S   
Sbjct: 139 KGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQTLLFSATWPEAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
              P  IE++T  +    IE  F     +   K ALLQ++L SQ    + ++FCN KK+ 
Sbjct: 199 QNAPLTIEIDTVDAL-PAIEQQFFEVSQK--GKIALLQKVL-SQHKPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            ++C +L   G S  ++HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QSVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           NF++    E ++HRIGRT RAG  G A +  A E+ +  + + ++++ K++W+N   S  
Sbjct: 315 NFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANILSEMLQLKLNWVNAPASVS 374

Query: 379 NPPLE 383
             PL+
Sbjct: 375 IVPLD 379


>gi|120553901|ref|YP_958252.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120323750|gb|ABM18065.1| ATP-dependent RNA helicase DbpA [Marinobacter aquaeolei VT8]
          Length = 457

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 147/377 (38%), Positives = 215/377 (57%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  +   +   GY +PTP+Q + +PL L   DV  +AQTG+GKTA+F +P++  
Sbjct: 4   FKALGLSAAMQANLDQLGYQQPTPVQAEAVPLALAGKDVIAMAQTGSGKTAAFGIPIIEA 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++    RV+   +L+L PTRELA QVA    +  +   N+ V  L GG+P   Q   L  
Sbjct: 64  IDPRCFRVQ---SLVLCPTRELADQVAKALRELARAKDNVKVLTLCGGVPIGPQIGSLSH 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  +G L ++ +++LV+DEADRMLDMGF   + +I S  P  RQTL
Sbjct: 121 GAHIVVGTPGRVDDHLRKGTLSLDGLKVLVLDEADRMLDMGFEEVVTSIVSQSPGGRQTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++K+SE F   P+ + V + ++T  TIE  F     Q  ++ A +  LL S
Sbjct: 181 LFSATWPPAIRKLSEQFQSKPEDVRVESKAATI-TIEESFYEI--QPDQRAAAVAALL-S 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + ++FC  K++   L   L + GFS  ++HG++DQR R   L  F   +  ++VA
Sbjct: 237 RFQPVSSLVFCTTKRDCDELSDELGRLGFSALSLHGDLDQRERDSALVRFANQSCTVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N +     E + HR+GRTGRAG  G A TL        I  +E
Sbjct: 297 TDVAARGLDIKGLPLVINAEPARDPEVHTHRVGRTGRAGEQGHAVTLCTPRQGHKITRLE 356

Query: 362 KLIEKKVDWLNGDLSSL 378
               + V W  GD  +L
Sbjct: 357 AERGEPVLW--GDTEAL 371


>gi|261866893|ref|YP_003254815.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412225|gb|ACX81596.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 443

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 130/364 (35%), Positives = 211/364 (57%), Gaps = 4/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FAD  L+P+++ A+   GY +PT IQ +TIP  ++  DV G A TGTGKTA+F+LP +
Sbjct: 5   IQFADFDLAPELLNALQKKGYQRPTAIQQETIPAAMEGGDVLGSAPTGTGKTAAFLLPAI 64

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR L+L PTRELA QVA+  ++      L++A + GG+ ++   +  
Sbjct: 65  QHLLDYPRRKPGAPRVLVLTPTRELAMQVAEQAKELACFTKLSIATITGGVAYQNHGEIF 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR+L +          +EIL+ DEADRML MGF    + I +   + +Q
Sbjct: 125 NKNQDIVVATPGRLLQYIKEENFDCRTVEILIFDEADRMLQMGFGQDAEKIAAETRWRKQ 184

Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           TLLFSAT+  D L+  +   L  P +IE        + I+  +    + +  K  LL + 
Sbjct: 185 TLLFSATLEGDLLEDFAARTLNEPVKIEAEPSRRERKKIQQWYYHADS-HEHKFKLLARF 243

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ Q+ +  GI+F  +++ V  L  +L K+G     + G + Q  R   +   K G +++
Sbjct: 244 IE-QEQVSKGIVFVRRREEVRELAENLRKRGIRSAYLEGEMAQTQRNNAIDKLKNGVVKV 302

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V++D++ARG+DI DV H+ NFD+P  A+ Y+HRIGRT RAG+ G A + V   D + + 
Sbjct: 303 LVSTDVSARGIDIDDVSHIMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYRLLG 362

Query: 359 AIEK 362
            I++
Sbjct: 363 KIKR 366


>gi|188994014|ref|YP_001928266.1| putative ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC
           33277]
 gi|188593694|dbj|BAG32669.1| putative ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC
           33277]
          Length = 427

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 132/372 (35%), Positives = 217/372 (58%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L  +V+  +    +++ TP+Q  TIP +L+  DV   AQTGTGKTA+++LP+L
Sbjct: 1   MRFDELNLGDEVLDGLDAMNFIETTPVQAATIPPILEGRDVIACAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             L  G     +   +I+ PTRELA Q+    E +     ++   + GG   + +E Q +
Sbjct: 61  DRLSAGEFASDVVNAVIMAPTRELAQQIDQQVEGFSYFMPVSAVAIYGGTDGVAWEQQRR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +  GAD++I TPGR++ H N G   ++++   V+DEADRMLDMGF   I  I   +P +
Sbjct: 121 GMAMGADIVIATPGRLISHLNLGSADLSHVSYFVLDEADRMLDMGFFDDIMQIYKQLPSS 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            QT++FSATM  +++K++ + L++P  +E+         ++  ++   AQ   K  +L++
Sbjct: 181 CQTVMFSATMPPKIRKLAASILRDPIEVEIAISRPPESIMQSAYICYEAQ---KLPILRK 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L + Q   K  IIF + K  V  L  +L K GF+V  +H +++Q  R +++ +FK G + 
Sbjct: 238 LFE-QSAPKRTIIFASAKLKVRELTSTLRKMGFNVADMHSDLEQSQREQVMRDFKNGYVD 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKH 356
           ++VA+D+ ARG+DI ++  V N+D+P+  E+Y+HRIGRT R     G A T V++E+   
Sbjct: 297 VLVATDIVARGIDIDNIRVVINYDIPHDPEDYVHRIGRTARGTNGEGLAITFVSEEEQSD 356

Query: 357 IDAIEKLIEKKV 368
              IE  + K V
Sbjct: 357 FHKIETFLGKSV 368


>gi|320164395|gb|EFW41294.1| DEAD box ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC
           30864]
          Length = 875

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 148/453 (32%), Positives = 232/453 (51%), Gaps = 58/453 (12%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ ++GL  +++  + D GY +P+PIQ + IP+ LQ  DV GIAQTG+GKTA+FV+P+L 
Sbjct: 440 NWNEIGLPTEILDIITDLGYTEPSPIQRQAIPIGLQNRDVIGIAQTGSGKTAAFVIPLLV 499

Query: 62  ILEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            + +   R+R       P  +I+ PTRELA Q+     K+     L    +IGG+  E Q
Sbjct: 500 WVSRIPRRLREQTVDHGPFAIIMAPTRELAQQIEVETLKFANPMGLRTVCVIGGLSREEQ 559

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G D++I TPGR++D      L++N    +V+DEADRM+DMGF P ++ +    P
Sbjct: 560 AFQLRLGCDIIIATPGRLIDILENRYLVLNRCTYIVLDEADRMIDMGFEPDLKKVLDFFP 619

Query: 176 FT-----------------------------------RQTLLFSATMTDELQKVSENFLQ 200
            +                                   RQT++F+ATM   +Q++++ +++
Sbjct: 620 VSNMRPTDEPDEALDAVTYHTQKFENMDIDSIVKTRYRQTVMFTATMPPLVQRLAQQYMR 679

Query: 201 NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVN 260
            P  + + +   T + +    V    + +K+  LL+ L +  +      IF NQKK    
Sbjct: 680 KPAVVTIGSAGQTVDQVTQV-VEIMTEANKRKRLLEILGEEHEPPI--FIFVNQKKGCDL 736

Query: 261 LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNF 320
           L  SLEK G+ V ++HG   Q  R   L  FK G + L+VA+D+A RG+DI DV  V N+
Sbjct: 737 LAKSLEKLGYRVASLHGGKTQEQRQAALDGFKSGDLDLLVATDVAGRGIDIKDVSLVINY 796

Query: 321 DVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNP 380
           D+    + Y HRIGRTGRAG+ G A T +  ED      +++++             +N 
Sbjct: 797 DMSKTVQEYTHRIGRTGRAGKKGLAITFLTNEDTGVYYELKQIL-------------INS 843

Query: 381 PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           P+ K      NH    NP P + +  D RK  +
Sbjct: 844 PVSKCPPDLMNHPEAQNP-PGQMSSKDLRKMGF 875


>gi|166710445|ref|ZP_02241652.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 574

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 139/373 (37%), Positives = 223/373 (59%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L P +V  +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++  
Sbjct: 11  FSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNR 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q + 
Sbjct: 71  LLNRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL 130

Query: 119 LERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           L++G DV+I TPGR++D+  + K++ ++  EI V+DEADRM D+GFI  I+ +   +P  
Sbjct: 131 LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER 190

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            TRQTLLFSAT++  + +++   +  P+++ V T + TA  +       +    +K  LL
Sbjct: 191 GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIY--FPSDEEKQTLL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL   +  +  ++F N K  V  +   LE+ G+ V  + G++ Q+ R  +L+ F++G 
Sbjct: 249 LGLLSRSEGART-MVFVNTKVFVERVARILERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367

Query: 356 HIDAIEKLIEKKV 368
            +  IE  IE+K+
Sbjct: 368 SLPDIEAYIEQKI 380


>gi|330896875|gb|EGH28465.1| helicase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 445

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 138/369 (37%), Positives = 214/369 (57%), Gaps = 5/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 2   FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G A+VR+  R +IL PTRELA Q     E++ +   +   L+ GG  F+ Q   L +
Sbjct: 62  L-IGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+LI TPGR+L+  N G L + ++E+LV+DEADRMLDMGF   ++ +        QT+
Sbjct: 121 VPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGGCAGREQTM 180

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT     L+++    L++P+ ++VN+ S  A    H  +       K+  L    L 
Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVL--NWLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +T +  IIF N K     L   L    +    +HG+ DQ+ R   +   K+G  ++MV
Sbjct: 239 ANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V NFD+P   ++Y+HR+GRTGRAG  G A +L+   D   + ++
Sbjct: 299 ATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSV 358

Query: 361 EKLIEKKVD 369
           E+ +++  +
Sbjct: 359 ERYLKQSFE 367


>gi|26450667|dbj|BAC42444.1| putative replication protein A1 [Arabidopsis thaliana]
 gi|28951031|gb|AAO63439.1| At5g60990 [Arabidopsis thaliana]
          Length = 456

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 148/418 (35%), Positives = 232/418 (55%), Gaps = 18/418 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+  ++V A    G+  P+ IQ + +P  L+  DV G+AQTG+GKT +F +P+L  
Sbjct: 11  FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70

Query: 63  L---------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
           L         +KGR         +L PTRELA Q+A+ FE  G + +L  A+L+GGI   
Sbjct: 71  LLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRM 130

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
            Q   L +   V++ TPGR+ DH +  K   + +++ LV+DEADR+L+  F   +  I  
Sbjct: 131 QQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILE 190

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +P  R+T LFSATMT +++K+    L+NP +IE  +  ST +T++  +    A+Y K C
Sbjct: 191 EIPLERETFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKY-KDC 249

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L+  L +  ++    +IF         L   L   GF    I G + Q  R+  L+ FK
Sbjct: 250 YLVYILSEMPES--TSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFK 307

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++V +D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR G   +LV + 
Sbjct: 308 AGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQY 367

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           +++    IEKLI KK+     +   +   LE++       A+K + +  K +G  +R+
Sbjct: 368 ELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERV-----AEAKKLSAMNMKESGGRKRR 420


>gi|156391127|ref|XP_001635620.1| predicted protein [Nematostella vectensis]
 gi|156222716|gb|EDO43557.1| predicted protein [Nematostella vectensis]
          Length = 518

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 135/355 (38%), Positives = 204/355 (57%), Gaps = 3/355 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA  G   +++ ++    Y +PT IQ + +P+ L   D+ GIA+TG+GKTA+F+ P L
Sbjct: 106 ISFAHFGFDEQMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPAL 165

Query: 61  T-ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             I+++   +V   P  LI  PTREL  Q+     ++GK YN+ V  + GG     Q+K 
Sbjct: 166 VHIMDQPELQVGDGPIVLICAPTRELCQQIYTEARRFGKAYNIHVVAVFGGGNKYEQSKA 225

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ GA++++ TPGR++DH       ++ +  LV DEADRM DMGF P +++I + V   R
Sbjct: 226 LQEGAEIVVATPGRLIDHVKAKATNLHRVTYLVFDEADRMFDMGFEPQVRSIANNVRPDR 285

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT   +++ +  + L +P R+ +       E +    V  +     K   L Q 
Sbjct: 286 QTLLFSATFKKKVEHLCRDILVDPVRVVIGELGEANEDVTQ-IVHIFNSMPSKWEWLTQN 344

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S  +  + +IF  +K N   L  +L K  F V  +HG++DQ  R K+L  FK+  I +
Sbjct: 345 LVSFASAGSVLIFVTKKLNSEELATNLRKNDFEVALLHGDMDQFERSKVLGQFKKREIPI 404

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +VA+D+AARGLDIP +  V N+DV      + HRIGRTGRAG  G A+TL+ + D
Sbjct: 405 LVATDVAARGLDIPSIKTVINYDVARDITTHTHRIGRTGRAGEKGNAYTLLTQSD 459


>gi|67972435|ref|NP_001020093.2| probable ATP-dependent RNA helicase DDX49 [Mus musculus]
 gi|76364172|sp|Q4FZF3|DDX49_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX49; AltName:
           Full=DEAD box protein 49
 gi|71051022|gb|AAH99554.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Mus musculus]
          Length = 480

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 154/416 (37%), Positives = 234/416 (56%), Gaps = 17/416 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++GLS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178
             V+I TPGR+ DH        M  I+ LV+DEADR+L+ G   F   ++ I + VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+TD L+++       P   E      T E ++  ++    +   K A L  L
Sbjct: 181 QTLLFSATLTDTLKELQGLATNEPFFWEAQATVRTVEQLDQRYLLVPEKV--KDAYLVHL 238

Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q+ QD +++   IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK   
Sbjct: 239 VQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSI 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI 
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            + AIE+ I++++  L  + + +   L ++++      R+   I  +++ FD +K+
Sbjct: 359 LLHAIEEQIKQQLAELVVEEAEVLQILTQVNV-----VRRECEIKLEASHFDEKKE 409


>gi|254514732|ref|ZP_05126793.1| RNA helicase DbpA [gamma proteobacterium NOR5-3]
 gi|219676975|gb|EED33340.1| RNA helicase DbpA [gamma proteobacterium NOR5-3]
          Length = 462

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 142/366 (38%), Positives = 214/366 (58%), Gaps = 12/366 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ L LSP    A+   GY   TP+Q +++PLVL+  DV   A+TG+GKTA+F + +L 
Sbjct: 5   DFSALPLSPAQFEALTALGYEHMTPVQAQSLPLVLKGRDVIARARTGSGKTAAFGIGLLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            +     R    + L+L PTRELA QV+    +      N+ +  L GG PF  Q   LE
Sbjct: 65  TINP---RFFGVQALVLCPTRELAEQVSGELRRLASRMANIKLVTLCGGKPFGPQVGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRILDH  R  L ++ +++LV+DEADRMLDMGF   +++I S  P +RQT
Sbjct: 122 HGAHIVVGTPGRILDHLQRKTLSLDGLKVLVLDEADRMLDMGFADSMESIISETPKSRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCF--VATYAQYSKKCALLQQ 237
           LLFSAT  + ++K+S +  ++P  + V+     A E IE  F  V  + + +   AL + 
Sbjct: 182 LLFSATYPENIRKMSASIQRSPTMVTVDEDVGHADEVIEQLFFEVQKHERNTTLLALFEH 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              +     N ++FCN KK    +   L++      AIHG+++QR R ++L  F   +  
Sbjct: 242 YRPA-----NAVVFCNTKKQCDEVAKILQEYDIEARAIHGDLEQRERDQVLVQFSNNSCP 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  +  V N+++P   + Y+HRIGRTGRAG  G A ++V   + + I
Sbjct: 297 VLVATDVAARGLDIKALAMVINYELPRDPDVYVHRIGRTGRAGETGLAMSIVIPSETQRI 356

Query: 358 DAIEKL 363
             IE+ 
Sbjct: 357 RKIEEF 362


>gi|268572017|ref|XP_002641212.1| Hypothetical protein CBG09074 [Caenorhabditis briggsae]
          Length = 732

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 149/426 (34%), Positives = 227/426 (53%), Gaps = 49/426 (11%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + G   +V  AV + GY++PTPIQ + IP+ LQ  DV G+A+TG+GKTA+F+LP+L 
Sbjct: 304 NWEESGFPDEVYRAVQEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLV 363

Query: 62  IL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +      E+     + P  +IL PTRELA Q+ +   K+GK   +    +IGG   E Q
Sbjct: 364 WITSLPKIERQEHSDQGPYAIILAPTRELATQIEEETNKFGKLLGIRTVSVIGGASREEQ 423

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL  G +V+I TPGR++D      LL+N    +++DEADRMLDMGF P +Q I   +P
Sbjct: 424 GMKLRMGVEVVIATPGRLMDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKILEYLP 483

Query: 176 FT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
            +                         RQT++F+ATM+  +++++  +L+ P  + +   
Sbjct: 484 ASNMKKDTDEFDNEEALMKGFETRDKYRQTVMFTATMSPAIERLARQYLRRPAVVHIGNA 543

Query: 211 SSTAETIEH-CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269
               E +E   ++ T  +  KK  LL+ +  SQ      I+F N+K    +L   L K G
Sbjct: 544 GKPTERVEQVVYMITKDRKPKK--LLEVI--SQHDKYPIIVFVNRKHGADSLAKGLAKVG 599

Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329
                +HG   Q +R   L   K+   +++VA+D+A RG+DI DV  V N+D+    E+Y
Sbjct: 600 KKTSVLHGGKGQDAREYALKALKDQETKILVATDVAGRGIDIKDVSLVINYDMAKTIEDY 659

Query: 330 IHRIGRTGRAGRHGKAFTLVAKEDIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
            HRIGRTGRAG+HGKA T +  +D   + D  + L+E  +        S  PP    ++A
Sbjct: 660 THRIGRTGRAGKHGKAITFLTADDTAVYYDLKQCLLESPI--------SSCPP----ELA 707

Query: 389 QHNHAR 394
            H  AR
Sbjct: 708 NHEAAR 713


>gi|307190551|gb|EFN74538.1| ATP-dependent RNA helicase DDX42 [Camponotus floridanus]
          Length = 769

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 137/356 (38%), Positives = 212/356 (59%), Gaps = 8/356 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F   G    ++  +    Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 256 FGHFGFDDALMKTIRKNEYTQPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFIWPMLVH 315

Query: 62  ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++   +    P  LIL PTREL+ Q+    +K+GK YN+ V    GG     Q+K LE
Sbjct: 316 IMDQRELKAGDGPIGLILAPTRELSQQIYQEAKKFGKVYNIQVCCCYGGGSKWEQSKALE 375

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA++++ TPGR++D        +  +  LV+DEADRM DMGF P +++I + V   RQT
Sbjct: 376 SGAEIVVATPGRMIDLVKMKATNLTRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQT 435

Query: 181 LLFSATMTDELQKVSENFLQNPKRI-EVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT   +++K++ + L +P RI + +   +  +  +H  +       K   LLQ L+
Sbjct: 436 LLFSATFKKKVEKLARDVLTDPIRIVQGDVGEANTDVTQHVIMFHNNPSGKWNWLLQNLV 495

Query: 240 Q--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  S  ++   +IF  +K N   L ++L+ + F V  +HG++DQ  R K+++ FK+  + 
Sbjct: 496 EFLSAGSL---LIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQIERNKVITAFKKKDVS 552

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            +VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TLV ++D
Sbjct: 553 TLVATDVAARGLDIPHIKTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLVTEKD 608


>gi|148696858|gb|EDL28805.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Mus musculus]
          Length = 545

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 154/416 (37%), Positives = 234/416 (56%), Gaps = 17/416 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++GLS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 8   FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 68  LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 124

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178
             V+I TPGR+ DH        M  I+ LV+DEADR+L+ G   F   ++ I + VP  R
Sbjct: 125 PHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPARR 184

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+TD L+++       P   E      T E ++  ++    +   K A L  L
Sbjct: 185 QTLLFSATLTDTLKELQGLATNEPFFWEAQATVRTVEQLDQRYLLVPEKV--KDAYLVHL 242

Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q+ QD +++   IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK   
Sbjct: 243 VQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSI 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI 
Sbjct: 303 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            + AIE+ I++++  L  + + +   L ++++      R+   I  +++ FD +K+
Sbjct: 363 LLHAIEEQIKQQLAELVVEEAEVLQILTQVNV-----VRRECEIKLEASHFDEKKE 413


>gi|78778139|ref|YP_394454.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251]
 gi|78498679|gb|ABB45219.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 411

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 147/393 (37%), Positives = 229/393 (58%), Gaps = 15/393 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ A+   G+ KPTPIQ + IPLVL+RHD+   AQTG+GK+ASF+LP+L
Sbjct: 1   MPFSKLGLSQNILQALKQNGFTKPTPIQERVIPLVLERHDIMAKAQTGSGKSASFILPIL 60

Query: 61  TILEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEA 114
            +L +    G+A++++   L+L PTREL  Q+ + F  +G   +    V  +IGG     
Sbjct: 61  ELLSRDSYEGKAKIKV---LVLTPTRELTQQIVEAFNTFGAFMSKKPKVVGVIGGEGIGE 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   +++G D+L+ T GR LD  ++ ++++++++  V+DEAD+MLD GF   ++ I   +
Sbjct: 118 QLFNIQKGCDILVATSGRFLDILSKKQMILSHVDFFVLDEADKMLDFGFAEELELILEAL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQ LLFSAT   ++  ++   +QNP  + V     T E++     A       +  L
Sbjct: 178 GQKRQNLLFSATYPPKMLFIASKIMQNPIEVSVEDEEPTVESVVQR--AILVSRENRAPL 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L+ LL+S+   +  I+F + K+   N+     K GFS  + HG++ Q  R   L  FK  
Sbjct: 236 LRHLLKSE-KYELVIVFMSSKRAADNIAAKFRKHGFSADSFHGDLHQEDRNYTLEEFKTK 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            +Q++ A+DL +RGLDI D+  V NFD+P  + +YIHRIGRT RAG+ G A + +  ED 
Sbjct: 295 KLQILFATDLVSRGLDINDITCVINFDLPRSSADYIHRIGRTARAGKAGMAISFIDHEDE 354

Query: 355 KHIDAIEKL--IEKKVDWLNG-DLSSLNPPLEK 384
            H   IEK   I  K + + G +L++  P  EK
Sbjct: 355 AHFRLIEKRSNIRLKREQIEGFELTTEAPKREK 387


>gi|28868793|ref|NP_791412.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213969602|ref|ZP_03397738.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           T1]
 gi|28852032|gb|AAO55107.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213925698|gb|EEB59257.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           T1]
          Length = 453

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 138/369 (37%), Positives = 214/369 (57%), Gaps = 5/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 10  FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 69

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G A+VR+  R +IL PTRELA Q     E++ +   +   L+ GG  F+ Q   L +
Sbjct: 70  L-IGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRK 128

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+LI TPGR+L+  N G L + ++E+LV+DEADRMLDMGF   ++ +        QT+
Sbjct: 129 VPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 188

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT     L+++    L++P+ ++VN+ S  A    H  +       K+  L    L 
Sbjct: 189 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVL--NWLL 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +T +  IIF N K     L   L    +    +HG+ DQ+ R   +   K+G  ++MV
Sbjct: 247 ANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V NFD+P   ++Y+HR+GRTGRAG  G A +L+   D   + ++
Sbjct: 307 ATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSV 366

Query: 361 EKLIEKKVD 369
           E+ +++  +
Sbjct: 367 ERYLKQSFE 375


>gi|237713244|ref|ZP_04543725.1| ATP-dependent RNA helicase [Bacteroides sp. D1]
 gi|262406616|ref|ZP_06083165.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646166|ref|ZP_06723822.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC
           2a]
 gi|294807864|ref|ZP_06766646.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229446711|gb|EEO52502.1| ATP-dependent RNA helicase [Bacteroides sp. D1]
 gi|262355319|gb|EEZ04410.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638495|gb|EFF56857.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC
           2a]
 gi|294444926|gb|EFG13611.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 420

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 217/371 (58%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ + IP++L+  D+  +AQTGTGKTA+F+LP+L
Sbjct: 1   MKFSELQLNANVLEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             L +G+        +I+ PTRELA Q+    E +     ++   + GG   I FE Q K
Sbjct: 61  NKLSEGKHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIAKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++   L  P  I++       + I+  +V    Q   K  +++ 
Sbjct: 181 RQTIMFSATMPAKIQQLANTILNEPSEIKLAVSKPAEKIIQAAYVCYENQ---KLGIIRS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   +   +  I+F + K  V  +  +L+    +V  +H +++Q  R  ++  FK G I 
Sbjct: 238 LFMDE-VPERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V NFDVP+ +E+Y+HRIGRT RA   G A T + +++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFINEKEQSNF 356

Query: 358 DAIEKLIEKKV 368
            +IE  +EK++
Sbjct: 357 KSIENFLEKEI 367


>gi|259906863|ref|YP_002647219.1| ATP-dependent RNA helicase RhlB [Erwinia pyrifoliae Ep1/96]
 gi|224962485|emb|CAX53940.1| ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
 gi|283476655|emb|CAY72483.1| putative ATP-dependent RNA helicase [Erwinia pyrifoliae DSM 12163]
 gi|310766111|gb|ADP11061.1| ATP-dependent RNA helicase RhlB [Erwinia sp. Ejp617]
          Length = 430

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 151/398 (37%), Positives = 227/398 (57%), Gaps = 24/398 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P+V+ A+   G+   TPIQ   +P  L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHH 70

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L      +GR +V  PR LIL PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 71  LLSHPAPEGR-QVNQPRALILAPTRELAVQIHADAEPLAQISGLKIGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G DVLI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDVLIATTGRLIDYAKQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAA 189

Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234
            Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  L
Sbjct: 190 NQRLNMLFSATLSFRVRELAFENMNNAEYVEVEPDQKTGHRIKEELF---YPSNEEKMRL 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G
Sbjct: 247 LQTLIE-EEWPDRTIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG +G + +L  +E  
Sbjct: 306 DVDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSISLACEEYA 365

Query: 355 KHIDAIEKLIEKKV-------DWLNGDLSSLNPPLEKI 385
            ++ AIE+ I   +       D L GDL    PP +++
Sbjct: 366 LNLPAIEEYIGHSIPVSRYNSDALMGDL----PPPKRL 399


>gi|145539279|ref|XP_001455334.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423133|emb|CAK87937.1| unnamed protein product [Paramecium tetraurelia]
          Length = 451

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 143/386 (37%), Positives = 221/386 (57%), Gaps = 16/386 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG+  ++  A    GY  PTPIQ +++P  LQ+ D+ G+A+TG+GKT +F LP   I
Sbjct: 14  FKELGVCEELSSACEKLGYKIPTPIQQQSLPYTLQKKDIIGLAETGSGKTLAFGLP---I 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A  +    LIL PTREL  Q+ ++F+  G +  L   +++GG+   AQ K L + 
Sbjct: 71  LQHLLANPQPYYALILSPTRELCVQIQEHFQAIGASIALKSVVILGGMDPLAQAKALAQK 130

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             ++I TPG+IL H    K   +  ++ LV+DEAD++L+M F   I  I  ++P  R T 
Sbjct: 131 PHIIIGTPGKILYHLENTKGFNLKQLKFLVLDEADKLLNMDFEREINAILDIIPKERNTY 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT+++ K+    L++P +IEV++   T  T++  ++    +Y  K   L  LL  
Sbjct: 191 LFSATMTNKVSKLQRASLKDPVKIEVSSKYQTVSTLQQNYLFVPDKY--KETYLVYLLNE 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   I+F    +  + +   L   GF   AIHG + Q  R+   + FK     L++A
Sbjct: 249 LAGL-TSIVFVATCQMAIKITLLLRNLGFQAIAIHGQMSQAKRLSSFNKFKSKESNLLIA 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDIP V  V NFD+P  A+ Y+HR+GRT RAG+ GKA +LV + D++    IE
Sbjct: 308 TDVASRGLDIPFVDLVLNFDIPQNAKEYVHRVGRTARAGKSGKAISLVTQYDVEMYQKIE 367

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDI 387
           +LIEK++            PLE+ D+
Sbjct: 368 QLIEKELSQY---------PLEESDV 384


>gi|189465693|ref|ZP_03014478.1| hypothetical protein BACINT_02054 [Bacteroides intestinalis DSM
           17393]
 gi|189433957|gb|EDV02942.1| hypothetical protein BACINT_02054 [Bacteroides intestinalis DSM
           17393]
          Length = 428

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 220/371 (59%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+ +V+ A+    + + TPIQ K+IP++L+  D+  +AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELQLNDQVLDALEAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             L +G         +++ PTRELA Q+    E +     ++   + GG   + FE Q K
Sbjct: 61  NKLSEGNHPEDAINCIVMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLMLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++   L NP  +++       + ++  +V    Q   K  +++ 
Sbjct: 181 RQTIMFSATMPAKIQQLANTILNNPAEVKLAVSRPAEKIVQAAYVCYENQ---KLGIIRS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   Q T +  IIF + K  V  +  +L+    +V  +H +++Q  R +++  FK G + 
Sbjct: 238 LFAEQ-TPERVIIFASSKLKVKEVTKALKMMKLNVGEMHSDLEQAQREEVMHEFKAGRVN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T + +++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFINEKEQSNF 356

Query: 358 DAIEKLIEKKV 368
             IE  +EK++
Sbjct: 357 KQIENFLEKEI 367


>gi|297797303|ref|XP_002866536.1| hypothetical protein ARALYDRAFT_496494 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312371|gb|EFH42795.1| hypothetical protein ARALYDRAFT_496494 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 588

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 143/384 (37%), Positives = 215/384 (55%), Gaps = 15/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D      ++ A+   G+ +PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP L  
Sbjct: 164 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 223

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +    A+ R+     P  LIL PTRELA Q+ +   K+G    +    + GG P   Q +
Sbjct: 224 VS---AQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIR 280

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   
Sbjct: 281 DLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPD 340

Query: 178 RQTLLFSATMTDELQKVSENFLQNP-KRIEVNTPSSTAETIEHC--FVATYAQYSKKCAL 234
           RQTLL+SAT   E++ ++  FL++P K I  +T     ++I      V T  +Y++   L
Sbjct: 341 RQTLLWSATWPREVESLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTL 400

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L+QL+     +    IF   K+    +   L   G+   AIHG+  Q  R ++L+ FK G
Sbjct: 401 LKQLMDGSKIL----IFVETKRGCDQVTRQLRMDGWPALAIHGDKTQPERDRVLAEFKSG 456

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +M A+D+AARGLD+ D+  V N+D PN  E+YIHRIGRTGRAG  G AFT    ++ 
Sbjct: 457 RSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNA 516

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL 378
           K    + K++++    +   LS+L
Sbjct: 517 KFARELIKILQEAGQVVPPTLSAL 540


>gi|307109616|gb|EFN57854.1| hypothetical protein CHLNCDRAFT_6836 [Chlorella variabilis]
          Length = 461

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 146/354 (41%), Positives = 205/354 (57%), Gaps = 12/354 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G    ++ A+  AGY KPT IQ + +P  L   DV GIA+TG+GKTA+FVLPM+  
Sbjct: 65  FKQCGFDGPLMAAITKAGYQKPTAIQAQALPAALCGRDVLGIAKTGSGKTAAFVLPMIVH 124

Query: 63  ------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L+KG      P  +I+ PTRELA Q+     ++ K YNL VA   GG+    Q 
Sbjct: 125 IMDQPELQKGEG----PIGVIVAPTRELAEQIHKETRRFSKAYNLGVAAAFGGLSKHQQF 180

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ G +V +CTPGR++D        M     LV DEADRM DMGF P +++I   +  
Sbjct: 181 KDLKAGCEVAVCTPGRMIDLIRMKACNMKRATYLVFDEADRMFDMGFEPQVRSIMGQIRP 240

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSATM  ++++++ + L +P RI V       E I+      +   SK+  LL 
Sbjct: 241 DRQTLLFSATMPRKVERLAGDALTSPVRITVGEVGGANEDIKQVVEVVHDLGSKQKWLLD 300

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L +  D   + ++F NQK  V  L  +L+  G  V AIHG++DQ +RM  L++FK G  
Sbjct: 301 RLQRFIDD-GDVLVFANQKARVDELAAALQAAGAKVAAIHGDMDQHTRMHTLADFKAGAY 359

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLV 349
             +VA+D+AARGLDI  +  V N+D     + ++HRIGRTGRAG + G A+TL+
Sbjct: 360 HALVATDVAARGLDIKSIKTVVNYDAAKDIDTHVHRIGRTGRAGDKDGVAYTLL 413


>gi|302306296|ref|NP_982501.2| AAL041Cp [Ashbya gossypii ATCC 10895]
 gi|299788450|gb|AAS50325.2| AAL041Cp [Ashbya gossypii ATCC 10895]
          Length = 486

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 148/379 (39%), Positives = 217/379 (57%), Gaps = 14/379 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L P+++ A  +  + KPTPIQ K IP  LQ  D+ G+AQTG+GKTA+F +P+L  
Sbjct: 68  FRELDLVPELIEACDNLNFTKPTPIQSKAIPPALQGKDIIGLAQTGSGKTAAFAIPILNR 127

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +         IL PTRELA Q+ + F+  G    +    ++GG+    Q + L R 
Sbjct: 128 LWHDQQPYY---ACILAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRK 184

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180
             ++I TPGR++DH    K   +  ++ LV+DEADR+LDM F P +  I   +P   R T
Sbjct: 185 PHIIIATPGRLMDHLENTKGFALRKLQFLVMDEADRLLDMEFGPVLDRILKNIPTKGRTT 244

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+    L NP +  V+    T +T+    +        K   L  LL 
Sbjct: 245 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGL--KNTFLIYLL- 301

Query: 241 SQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++   K  I+F   K N   +  LC+ LE   FS  A+HG+++Q  R   L  FK G   
Sbjct: 302 NEFIGKTTIVFTRTKANAERISGLCNLLE---FSATALHGDLNQNQRTGALDLFKAGKKS 358

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV++ D++ I
Sbjct: 359 ILVATDVAARGLDIPSVDLVINYDIPVDSKSYIHRVGRTARAGRSGKSVSLVSQYDLELI 418

Query: 358 DAIEKLIEKKVDWLNGDLS 376
             IE+++ KK+   N D S
Sbjct: 419 LRIEEVLGKKLPKENVDKS 437


>gi|218131071|ref|ZP_03459875.1| hypothetical protein BACEGG_02675 [Bacteroides eggerthii DSM 20697]
 gi|217986775|gb|EEC53108.1| hypothetical protein BACEGG_02675 [Bacteroides eggerthii DSM 20697]
          Length = 428

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 222/371 (59%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ ++IP++L+  D+  +AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELKLNDNVLEALDAMRFDECTPIQEQSIPVILEGRDLIAVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             L +G         +++ PTRELA Q+    E +     ++   + GG   + FE Q +
Sbjct: 61  NKLSEGGHPEDSINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++++ L NP  +++       + ++  +V    Q   K  +++ 
Sbjct: 181 RQTIMFSATMPAKIQQLAKSILNNPAEVKLAVSKPAEKIVQAAYVCYENQ---KLGIIRS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   Q T +  IIF + K  V  +  +L++   +V  +H +++Q  R +++  FK G I 
Sbjct: 238 LFAEQ-TPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V +++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNF 356

Query: 358 DAIEKLIEKKV 368
             IE  +EK++
Sbjct: 357 KGIENFLEKEI 367


>gi|221108888|ref|XP_002166443.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 789

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 142/383 (37%), Positives = 211/383 (55%), Gaps = 36/383 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L   ++  +L  GY  PTPIQ + IP+ L   D+ GIA+TG+GKTA+FV+P+L  
Sbjct: 363 WRDSSLPNDILDVILSLGYTDPTPIQRQAIPIGLMNRDIIGIAETGSGKTAAFVIPLLVW 422

Query: 63  L----EKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +    E  R  V    P  +IL PTRELA Q+ +   K+ K   +    +IGG+  E Q 
Sbjct: 423 ITGLPESDRQSVSDNGPFAIILAPTRELAQQIEEETIKFAKKLGIRTVAVIGGLSREDQG 482

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 483 FQLRLGCEIVIATPGRLIDVLENRYLVLSQCSYVVMDEADRMIDMGFEPDVQKILEHLPV 542

Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           T                         RQT++F+ATM   +++++  +L+ P  + + +  
Sbjct: 543 TNIKPDTEEAEDVNVIAKNYSSKDKYRQTVMFTATMPPVVERLARTYLRRPAIVTIGSAG 602

Query: 212 STAETIEH-CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
              + +E   ++ + AQ  KK  LL+ L    D     ++F NQKK    L  SLEKQGF
Sbjct: 603 KPVDRVEQKVYMLSAAQKKKK--LLEILSNKLDP--PVLVFVNQKKGADVLAKSLEKQGF 658

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG   Q  R   L++ KEG   ++VA+D+A RG+DI DV  V N+D+    E+Y 
Sbjct: 659 SATTLHGGKGQEQREFALNSLKEGNKDILVATDVAGRGIDIKDVSMVINYDMAKNIESYT 718

Query: 331 HRIGRTGRAGRHGKAFTLVAKED 353
           HRIGRTGRAG+ G A T + +ED
Sbjct: 719 HRIGRTGRAGKSGIAVTFLTQED 741


>gi|193683600|ref|XP_001951837.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
           [Acyrthosiphon pisum]
          Length = 450

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 219/368 (59%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   +   +  PT IQ + IP+ LQ  D+ G+A+TG+GKT +F +P+L 
Sbjct: 21  FKDLGVT-DVLCETCETLKWKTPTKIQKEAIPVALQGKDIIGLAETGSGKTGAFAIPILQ 79

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R      LIL PTRELA Q+++  E  G +  +  A+++GG+   AQ+  L +
Sbjct: 80  ALLENPQRYF---ALILTPTRELAFQISEQIEALGSSIGVKCAVIVGGMDMMAQSLMLAK 136

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   + N+++LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 137 KPHIIIATPGRLVDHLENTKGFSLRNLKVLVMDEADRILNMDFEEEVDKILKVIPRERRT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L +P R+EV+T   T E ++  ++    +Y K   L+  L  
Sbjct: 197 FLFSATMTKKVQKLHRASLVDPVRVEVSTKFQTVEQLQQYYIFIPVKY-KDVYLVHIL-- 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + ++F       V +   L   G     +HG + Q  R+  L+ FK  +  +++
Sbjct: 254 NEMAGNSFMVFMATCNGTVRVALLLRNLGLDAIPLHGQMTQNKRLASLNKFKSKSRSILI 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D+++RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA TLV + DI+    I
Sbjct: 314 STDVSSRGLDIPHVDVVINFDMPTHSKDYIHRVGRTARAGRSGKAITLVTQYDIELYQRI 373

Query: 361 EKLIEKKV 368
           E+LI KK+
Sbjct: 374 EQLISKKL 381


>gi|18424420|ref|NP_568931.1| DEAD/DEAH box helicase, putative (RH10) [Arabidopsis thaliana]
 gi|108861883|sp|Q8GY84|RH10_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 10
 gi|10177322|dbj|BAB10648.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|332010025|gb|AED97408.1| DEAD-box ATP-dependent RNA helicase 10 [Arabidopsis thaliana]
          Length = 456

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 148/418 (35%), Positives = 232/418 (55%), Gaps = 18/418 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+  ++V A    G+  P+ IQ + +P  L+  DV G+AQTG+GKT +F +P+L  
Sbjct: 11  FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70

Query: 63  L---------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
           L         +KGR         +L PTRELA Q+A+ FE  G + +L  A+L+GGI   
Sbjct: 71  LLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRM 130

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
            Q   L +   V++ TPGR+ DH +  K   + +++ LV+DEADR+L+  F   +  I  
Sbjct: 131 QQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILE 190

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +P  R+T LFSATMT +++K+    L+NP +IE  +  ST +T++  +    A+Y K C
Sbjct: 191 EIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKY-KDC 249

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L+  L +  ++    +IF         L   L   GF    I G + Q  R+  L+ FK
Sbjct: 250 YLVYILSEMPES--TSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFK 307

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++V +D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR G   +LV + 
Sbjct: 308 AGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQY 367

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           +++    IEKLI KK+     +   +   LE++       A+K + +  K +G  +R+
Sbjct: 368 ELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERV-----AEAKKLSAMNMKESGGRKRR 420


>gi|193222330|emb|CAL61847.2| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
          Length = 464

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 144/379 (37%), Positives = 213/379 (56%), Gaps = 10/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L LSP ++  +   GY + T IQ +++P++LQ  D+   A+TG+GKTA+F + ML  
Sbjct: 6   FAALALSPPMLSNLDALGYREMTSIQAQSLPVILQLRDLIAQAKTGSGKTAAFGIGMLQK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L      ++    L++ PTRELA QV++   +  +   N+ +  L GG P   Q   LE 
Sbjct: 66  LNPTWFAIQ---GLVICPTRELADQVSNELRRLARFADNIKILTLCGGAPMRPQIASLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH +R  + ++ ++ LV+DEADRM+DMGF   I  I S  P  RQTL
Sbjct: 123 GAHIVVGTPGRLRDHISRNTINLSTVQTLVLDEADRMVDMGFYEEIAGIVSACPERRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D+++K S  FL++P  ++V      ++  +  +   Y   +   A L +  + 
Sbjct: 183 LFSATYPDDIRKASAEFLRDPVEVKVEAQHDDSQIEQRFYEVGYDDRNAAVATLLKHYRP 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+     FCN K +   L   L  QGFS  A++G ++QR R +IL  F   +  ++VA
Sbjct: 243 VSTLA----FCNTKIHCRELAAELRAQGFSALALYGELEQRERDEILVLFANQSCSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +G V N DV    E +IHRIGRTGR    G A +L A  + K +  IE
Sbjct: 299 TDVAARGLDIQSLGAVINVDVSKDTEVHIHRIGRTGRGQDKGLALSLCAPNEKKWVKLIE 358

Query: 362 KLIEKKVDWLNGDLSSLNP 380
           +  +K   W   DL S  P
Sbjct: 359 EYQQKPAQWF--DLKSAEP 375


>gi|322834137|ref|YP_004214164.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
 gi|321169338|gb|ADW75037.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
          Length = 442

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 137/353 (38%), Positives = 204/353 (57%), Gaps = 4/353 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L  +++ A+ D GY +PT IQ + IP  +   DV G A TGTGKTA+F+LP L  
Sbjct: 6   FSELELDERLIEALGDKGYSRPTVIQAEAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVA+   +  K+  L +A + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAMQVAEQARELAKHTELDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          IE L++DEADRMLDMGF   I+ I++   + +QTL
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAIETLILDEADRMLDMGFAQDIETISAEARWRKQTL 185

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  E +++ +E  L  P  IE +      + I   +       + K  +L  LL+
Sbjct: 186 LFSATLEGEAIREFAERILTEPVEIEADPSRRERKKILQWYYRA-DDLAHKTRMLIHLLK 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D  K+ +IF  +++ V  L   L + G + C + G + Q  R + +    E  + ++V
Sbjct: 245 QEDVTKS-VIFVRKRERVHELVAWLREAGINSCYLEGEMVQVKRTEAVKRMVEDRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           A+D+AARGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A + V   D
Sbjct: 304 ATDIAARGLDINDISHVFNFDLPLTADIYLHRIGRTGRAGRKGTAISFVEAHD 356


>gi|307825386|ref|ZP_07655605.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307733561|gb|EFO04419.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 451

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 142/397 (35%), Positives = 227/397 (57%), Gaps = 32/397 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F++L LS  ++ ++ DAG+   TPIQ + +PL L+  D+ G AQTGTGKTA+F+L     
Sbjct: 11  FSNLELSDSILRSLKDAGFNHCTPIQRQALPLSLRGKDIAGQAQTGTGKTATFLLATFQH 70

Query: 61  ------------------------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG 96
                                    ++ K + +++ PR +IL PTRELA Q+  +  + G
Sbjct: 71  LINDAEDDAEAQTNADIETEKTAPNVVAKSK-QIKYPRAIILAPTRELAIQIHKDALQLG 129

Query: 97  KNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEAD 156
           K+ NL +AL+ GG  ++ Q   L+   D++I TPGRI+D + +    ++N+++ V+DEAD
Sbjct: 130 KHLNLKLALIYGGTDYQKQLDSLKSNVDIIIGTPGRIIDFYRQNAFTLDNVKVTVMDEAD 189

Query: 157 RMLDMGFIPYIQNITSLVPFTRQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTA 214
           RM D+GFI  I+ +   +P   Q L  LFSAT++ ++ +++   + NP  I + T   T+
Sbjct: 190 RMFDLGFIKDIRFLLRRMPPPEQRLNMLFSATLSYKVTELAYEHMNNPVLIRIETEEVTS 249

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           + I+    A      +K  LL  +L +Q   +  IIF N K+    L  +L   G+   A
Sbjct: 250 KAIQQS--AFCPSNEQKIPLLVGIL-NQHQPQRSIIFVNTKRCAERLDDTLNANGYKTAA 306

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           + G++ Q  R ++LS+F+E  I L++A+D+AARGL I DV HV N+D+P   E+Y+HRIG
Sbjct: 307 LSGDVPQDKRQRLLSDFQENKITLLIATDVAARGLHIADVSHVINYDLPQDVEDYVHRIG 366

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
           RT R G  G A + + +E    +  IE+ IE+K+  L
Sbjct: 367 RTARFGASGVAISFICEEYAYSMPDIEEYIEQKIPVL 403


>gi|213963177|ref|ZP_03391435.1| ATP-dependent rna helicase, dead/deah box family [Capnocytophaga
           sputigena Capno]
 gi|213954261|gb|EEB65585.1| ATP-dependent rna helicase, dead/deah box family [Capnocytophaga
           sputigena Capno]
          Length = 584

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 131/364 (35%), Positives = 214/364 (58%), Gaps = 8/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61
           F  LGL   ++ A+ D G+  P+ IQ K IP +L    D+  +AQTGTGKTA+F  P+L 
Sbjct: 4   FEQLGLDEPILKAISDMGFEIPSEIQQKAIPTLLANGADMVALAQTGTGKTAAFGFPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           +++      R+ + LIL PTREL  Q+A     Y K    + V  + GG   E Q + L+
Sbjct: 64  LIDTDS---RVTQGLILSPTRELCLQIASELRNYAKYLPKVNVVAVYGGASIEEQARSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA +++ TPGR+ D   R  + +++I   V+DEAD ML+MGF   I  I S  P  + T
Sbjct: 121 KGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILSHTPQEKST 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +E+ K++  F++ P  I V T +    T++H +     ++  +   L++L  
Sbjct: 181 WLFSATMPNEVAKIARKFMRKPIEITVGTRNQATNTVQHEYYIVSGRHRYQA--LKRLAD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   + + ++FC  K++   +   L + G++  A+HG++ Q  R  ++ +F+   IQ++V
Sbjct: 239 ANPDIFS-VVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQMLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV ++ +P+  E Y HR GRTGRAG+ G +  ++ K ++K I  I
Sbjct: 298 ATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVILPKSEVKKIKTI 357

Query: 361 EKLI 364
           EK+I
Sbjct: 358 EKMI 361


>gi|127513705|ref|YP_001094902.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126639000|gb|ABO24643.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 451

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 145/369 (39%), Positives = 212/369 (57%), Gaps = 6/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  L L P +  A    GY   T +Q K IP  L   D+   AQTGTGKTA+F   +L
Sbjct: 1   MNFDALPLDPLLAQAAKACGYETLTQVQAKVIPTALAGRDLMACAQTGTGKTAAFSFVLL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L + RA +     LIL PTRELA QVAD+  +Y +   LT   + GG     Q K L
Sbjct: 61  QRLLNQPRA-IGQLSALILTPTRELAIQVADSISRYSQFTELTTLAVYGGANINPQRKAL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+ D   +  L +  ++ L++DEADRMLDMGF+  I+    L+  +  
Sbjct: 120 ARGVDILVATPGRLFDLLGQHDLSLETVDQLIVDEADRMLDMGFVRDIERTKRLLCVSHS 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT T E++ ++   L NP+ I V T +S+   IE       A+  +K  LL +L+
Sbjct: 180 TMLFSATFTPEVKALATKMLDNPEWINV-TSASSGPQIEQKIYPLDAR--RKAELLAELI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  +  ++F N K++   L   L+  G      HG+  Q +R + L  FK G ++++
Sbjct: 237 -GRNNWQQVLVFVNTKESAERLHRELKLDGIKNAVFHGDKTQGARNRALEQFKAGELRVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N ++P+  ++Y+HRIGRTGRAG  G + + VAK+D   + A
Sbjct: 296 VATDVAARGLDITALPLVINLELPDEPQDYVHRIGRTGRAGLSGVSISFVAKQDETALGA 355

Query: 360 IEKLIEKKV 368
           IE LI K +
Sbjct: 356 IEALIGKTL 364


>gi|317477042|ref|ZP_07936284.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906835|gb|EFV28547.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 428

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 221/371 (59%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ ++IP++L+  D+  +AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELKLNDNVLEALDAMRFDECTPIQEQSIPVILEGRDLIAVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             L +G         +++ PTRELA Q+    E +     ++   + GG   + FE Q +
Sbjct: 61  NKLSEGGHPEDSINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++++ L NP  +++       + ++  +V    Q   K  ++  
Sbjct: 181 RQTIMFSATMPAKIQQLAKSILNNPAEVKLAVSKPAEKIVQAAYVCYENQ---KLGIIHS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   Q T +  IIF + K  V  +  +L++   +V  +H +++Q  R +++  FK G I 
Sbjct: 238 LFAEQ-TPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V +++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNF 356

Query: 358 DAIEKLIEKKV 368
             IE  +EK++
Sbjct: 357 KGIENFLEKEI 367


>gi|70991044|ref|XP_750371.1| ATP-dependent RNA helicase  [Aspergillus fumigatus Af293]
 gi|74669652|sp|Q4WJE9|RRP3_ASPFU RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|66848003|gb|EAL88333.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus Af293]
          Length = 472

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 138/371 (37%), Positives = 217/371 (58%), Gaps = 14/371 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+  ++  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 54  FKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL-- 111

Query: 63  LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +A +  P++   LIL PTRELA Q++ +FE  G   N+  A+++GG+   +Q+  L
Sbjct: 112 ----QALMENPQSFFGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIAL 167

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +++ TPGR+LDH    K   +  ++ LV+DEADR+LDM F P +  I  ++P  R
Sbjct: 168 GKKPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRER 227

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +T LFSATM+ +++ +    L NP R+ V++    T  T+   ++  +  +  K   L  
Sbjct: 228 RTFLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYL--FLPHKHKDIYLVY 285

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL ++   ++ IIF         +   L   GF    +HG + Q +R+  L  F+  +  
Sbjct: 286 LL-NEFVGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRD 344

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIP V  V NFD+P  ++ Y+HR+GRT RAG+ G A + V + D++  
Sbjct: 345 ILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIW 404

Query: 358 DAIEKLIEKKV 368
             IE  + KK+
Sbjct: 405 LRIEGALGKKL 415


>gi|330447635|ref|ZP_08311283.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491826|dbj|GAA05780.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 461

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 135/368 (36%), Positives = 218/368 (59%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P ++  +   GY   TPIQ +++PL+L+  DV    +TG+GKTA+F L +L  
Sbjct: 6   FSTLNLNPDLLSNLTSLGYDAMTPIQAQSLPLILEGKDVIAQGKTGSGKTAAFGLGLLQN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   TL+L PTRELA QVA    +  +  +N+ V  L GG+PF  Q   LE 
Sbjct: 66  LRVKRFRVQ---TLVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ +H  +G L ++ +  LV+DEADRML+MGF   +  I    P  RQTL
Sbjct: 123 GAHIIVGTPGRVEEHIRKGFLCLDELNTLVLDEADRMLEMGFQDSLDAIIEGAPRDRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D++  +++  ++NP +++V +    +   +H +     +   +     +LL S
Sbjct: 183 LFSATYPDQIASIAKRIMRNPVQVKVESNHDNSSISQHFYKVDNNEERMRAV---RLLLS 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ ++FCN K+    +   LE  GFS  A+HG+++QR R + L  F   +  ++VA
Sbjct: 240 QHRPESCVVFCNTKREAQEISDDLEAYGFSAIALHGDLEQRERDRTLVLFANKSRSILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++  V N+ +    E ++HRIGRTGRAG  G A +L + ++   +  +E
Sbjct: 300 TDVAARGLDIDNLDAVINYHLARDTEVHVHRIGRTGRAGSKGIACSLFSDKEHYKVALLE 359

Query: 362 KLIEKKVD 369
             +++ ++
Sbjct: 360 DYLDRPIE 367


>gi|254515296|ref|ZP_05127357.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium NOR5-3]
 gi|219677539|gb|EED33904.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium NOR5-3]
          Length = 428

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 213/373 (57%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L P ++  + + G+   +PIQ + +P  LQ HD  G AQTGTGKTA+F++ +   
Sbjct: 47  FHDLDLHPTLMHGIAEIGFEYCSPIQAQVLPHTLQGHDAIGKAQTGTGKTAAFLITIFDD 106

Query: 63  L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L     +G   +  PR L++ PTREL  Q+A +    GK   L    LIGG+ ++ Q  +
Sbjct: 107 LLRNPHEGERFLGEPRALVIAPTRELVMQIAADAADLGKYTGLNTCTLIGGMDYQKQLNQ 166

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L R   D+++ TPGR++D   R  L+++ +E+LV+DEADRMLDMGFIP ++ I    P  
Sbjct: 167 LGREVVDLVVATPGRLIDFTGRRDLVLDQVEVLVLDEADRMLDMGFIPQVKRIVRQTPHK 226

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T ++  +SE +  +   +E+       ++++       A   ++  +L
Sbjct: 227 DYRQTLLFSATFTQDIINLSEQWTTDAVTVEIEPDHVATDSVDQRIY--LASSEERFRIL 284

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL+S D   + I+F N++  V  L   L K   +   + G I Q  R K L  FK+G 
Sbjct: 285 VNLLRSDDAT-SVIVFANRRDQVRRLYERLRKASITCGMLSGEIAQAKRTKTLDQFKKGE 343

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+A RG+ +  V HV N+++P   E+Y+HRIGRTGRAG  G + +  +++D  
Sbjct: 344 ISVLVATDVAGRGIHVDGVSHVVNYNLPEDPEDYVHRIGRTGRAGASGTSISFASEDDAF 403

Query: 356 HIDAIEKLIEKKV 368
            +  +E L+   V
Sbjct: 404 LLPDLEALLGAPV 416


>gi|146413022|ref|XP_001482482.1| hypothetical protein PGUG_05502 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 475

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 138/366 (37%), Positives = 210/366 (57%), Gaps = 13/366 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L P+++ A+    Y KPTPIQ   IP  L+  D+ G+AQTG+GKTA+F +P+L  
Sbjct: 66  FLELNLVPELMEAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQS 125

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L + +   R    L+L PTRELA Q+ + F+  G    +    ++GG+    Q + L R 
Sbjct: 126 LWEAQ---RPYYALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQARDLMRK 182

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +L+ TPGRI+DH    K   + +++ LV+DEADR+LDM F P +  I  ++P  R T 
Sbjct: 183 PHILVATPGRIMDHLENTKGFSLKSLQYLVMDEADRLLDMDFGPALDKILKVIPTKRTTY 242

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT+++ K+    L  P ++ V+    TA+ +    +     Y  K   L  LL +
Sbjct: 243 LFSATMTNKIAKLQRASLHEPVKVAVSNKYQTADNLVQSMMLVSDGY--KNTFLIHLL-N 299

Query: 242 QDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   K+ I+F   C   +    L   L   GFS   +HG + Q  R+  L+ FK G   +
Sbjct: 300 EFMGKSIIVFTRTCAHTQRSTLLARIL---GFSAVPLHGQLTQSQRLGSLNKFKSGKANI 356

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLDIP V  V N+D+P  ++ YIHR+GRT RAG+ GK+ +LV + D++   
Sbjct: 357 LIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLEMYL 416

Query: 359 AIEKLI 364
            IE ++
Sbjct: 417 RIESVL 422


>gi|50123133|ref|YP_052300.1| ATP-dependent RNA helicase RhlB [Pectobacterium atrosepticum
           SCRI1043]
 gi|56749479|sp|Q6CZD9|RHLB_ERWCT RecName: Full=ATP-dependent RNA helicase rhlB
 gi|49613659|emb|CAG77110.1| putative ATP-dependent RNA helicase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 430

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 153/419 (36%), Positives = 230/419 (54%), Gaps = 28/419 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P+V+ A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPQVIEALESKGFHYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY 70

Query: 63  L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L         +   PR LI+ PTRELA Q+  + E       L + L  GG  ++ Q K 
Sbjct: 71  LLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P T 
Sbjct: 131 LENGVDILVGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPATS 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRITEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q LL+ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F +G+
Sbjct: 248 QTLLE-EEWPDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGS 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG+ G + +L  +E   
Sbjct: 307 IDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV-------DWLNGDLSS----LNPPLEKIDIAQHNHARKNNPIPQKS 403
           ++ AIE  I   +       D L  DL +      PP        +N  R++N  P++S
Sbjct: 367 NLPAIETYIGHGIPLSKYNSDALMNDLPAPKRLTRPP------RSNNGPRRHNSAPRRS 419


>gi|313837601|gb|EFS75315.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2]
 gi|314972540|gb|EFT16637.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3]
          Length = 536

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 149/410 (36%), Positives = 225/410 (54%), Gaps = 20/410 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L  
Sbjct: 35  FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 94

Query: 63  L----EKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    ++G   +     P+ L++ PTRELA QV+ N           V  + GG+ +E Q
Sbjct: 95  ITLPGDEGWEELTTKGKPQALVMCPTRELALQVSQNISTAASVRGARVLTVYGGVGYEPQ 154

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G DV++ TPGR+LD   R  L ++++ I+V+DEAD MLD+GF+P ++N+    P
Sbjct: 155 IDALQAGVDVVVGTPGRLLDLSQRKNLDLSHVHIVVLDEADEMLDLGFLPDVENLIGRTP 214

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT+LFSATM   +  ++ + L  P  +      + A   +       A    K  ++
Sbjct: 215 TPRQTMLFSATMPAPIMALARSQLNRPVHVRAEGADTQATVPDTQQFVYQAHPLDKIEII 274

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            ++LQ+ D  K  IIFC  K+    L   L  +GF   AIHG++ Q +R K L  F+ G 
Sbjct: 275 GRILQANDAEKV-IIFCRTKRACQRLSDDLNDRGFKARAIHGDLTQVAREKALKRFRHGD 333

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   D+ 
Sbjct: 334 VTILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGTKGVAVTLVDWADVT 393

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
                 KLI+K    LN +LS    P+E    + H +   +  IP+ + G
Sbjct: 394 RW----KLIDKA---LNLELSE---PVETYSTSPHLYTDLD--IPEDARG 431


>gi|225450277|ref|XP_002267581.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 663

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 137/359 (38%), Positives = 201/359 (55%), Gaps = 34/359 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+++ L   +   +    YVKPTP+Q   IP+ +   D+   AQTG+GKTA+F  P+++ 
Sbjct: 219 FSEIDLGDALNLNIRRCKYVKPTPVQRHAIPISIAGRDLMACAQTGSGKTAAFCFPIISG 278

Query: 63  LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           + KG+       +R   P  LIL PTREL+ Q+ D  +K+     + V +  GG P   Q
Sbjct: 279 IMKGQYAQRPRGSRTAYPLALILSPTRELSCQIHDEAKKFSYQTGVRVVVAYGGAPINQQ 338

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + LERG D+L+ TPGR++D   R ++ +  ++ L +DEADRMLDMGF P I+ I   + 
Sbjct: 339 LRDLERGVDILVATPGRLVDLLERARISLQMVQYLALDEADRMLDMGFEPQIRRIVEQMD 398

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQT+LFSAT   E+Q+++ +FL N                 + F+A   +  K+
Sbjct: 399 MPPRGVRQTMLFSATFPKEIQRLASDFLAN-----------------YIFLAV-GRSDKR 440

Query: 232 CALLQQLLQSQDTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
             L+  L   ++   +G     ++F   KK    L H L   GF   +IHG+  Q+ R  
Sbjct: 441 SHLMDLLHAQRENGTHGKQALTLVFVETKKGADALEHWLCINGFPATSIHGDRSQQEREH 500

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
            L  FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G A
Sbjct: 501 ALRLFKSGATPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLA 559


>gi|237809398|ref|YP_002893838.1| ATP-dependent RNA helicase RhlB [Tolumonas auensis DSM 9187]
 gi|259585616|sp|C4LB49|RHLB_TOLAT RecName: Full=ATP-dependent RNA helicase rhlB
 gi|237501659|gb|ACQ94252.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 425

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 145/383 (37%), Positives = 223/383 (58%), Gaps = 11/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FA+LGL P+V+  V   G+   TPIQ +TIPL+L   ++ G AQTGTGKT +F+      
Sbjct: 11  FAELGLEPQVLAGVEAKGFHNCTPIQAETIPLLLTGKNIAGQAQTGTGKTIAFLAGTFNY 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT       R   PR LI+ PTRELA Q+ ++     ++    + L  GG  ++ Q   
Sbjct: 71  LLTHSASAERRQNQPRVLIMAPTRELAVQIYNDAVPMSESCGFKMGLAYGGDGYDKQLAV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176
           L+ G D+LI T GRI+D+  +G + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LQEGVDLLIGTTGRIIDYLKQGIIDLGAIQVVVLDEADRMFDLGFIKDIRFLFRRMPPPA 190

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
            R  +LFSAT++  +Q+++   +  P+ I++     T + I E  F   Y     K  LL
Sbjct: 191 QRLNMLFSATLSLRVQELAYEHMNEPQHIQIEPEQMTGQRIKEELF---YPSNEDKMLLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++ +D  +  IIF N K    ++   L+  G  V  + G++ Q+ R+KIL +F  G 
Sbjct: 248 LTLME-EDWPEKAIIFANTKHGCEDVHAWLQADGHRVGLLTGDVPQKKRLKILEDFTAGL 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IPDV HVFN+D+P+ AE+Y+HRIGRTGRAGR G A +   ++   
Sbjct: 307 LDVLVATDVAARGLHIPDVSHVFNYDLPDDAEDYVHRIGRTGRAGRSGHAISFACEDYAF 366

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
           ++  IE+     +     D S+L
Sbjct: 367 NLPEIEEYTHHPIPVSKYDPSAL 389


>gi|212710051|ref|ZP_03318179.1| hypothetical protein PROVALCAL_01104 [Providencia alcalifaciens DSM
           30120]
 gi|212687258|gb|EEB46786.1| hypothetical protein PROVALCAL_01104 [Providencia alcalifaciens DSM
           30120]
          Length = 468

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 142/372 (38%), Positives = 225/372 (60%), Gaps = 11/372 (2%)

Query: 3   FADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FADL   P    + L + G++  TPIQ   +P +L   DV   A+TG+GKTA+F    L 
Sbjct: 15  FADLNALPAEQLSNLNELGFITMTPIQEAALPAILAGKDVRAQAKTGSGKTAAF---GLG 71

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           +L++  A+    ++L+L PTRELA QVA+   +  +   NL +  L GG+PF  Q   L 
Sbjct: 72  LLQRIDAKNFNTQSLVLCPTRELADQVANELRRLARYIPNLKILTLCGGVPFSVQRDSLV 131

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             A +L+ TPGR+LDH ++  + +++++ LV+DEADRMLDMGF   I  + S  P  RQT
Sbjct: 132 HAAHILVATPGRLLDHLHKETVQLDHLQTLVLDEADRMLDMGFADDIDAVISFTPEDRQT 191

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLL 239
           LLFSAT  D +  +S+   +NP  IE+N+ +   +  +  + VA +     K  LLQ+LL
Sbjct: 192 LLFSATWPDSIAAISQRIQKNPLTIEINSVNELPDVEQQFYEVARH----DKIDLLQKLL 247

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S++   + ++FCN KK+   +  +L     SV  +HG+++QR R + L  F  G+ +++
Sbjct: 248 -SREQPASCVVFCNTKKDCQAVYDALMDSNQSVLVLHGDMEQRDRDQTLVRFANGSSRVL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI  +  V NF++    E ++HRIGRT RAG+ G A +L + E+ +  + 
Sbjct: 307 VATDVASRGLDIKALEMVINFELSWDPEVHVHRIGRTARAGKSGLAISLCSPEEAQRANV 366

Query: 360 IEKLIEKKVDWL 371
           +E+++  K++WL
Sbjct: 367 LEEMLNIKLNWL 378


>gi|134094897|ref|YP_001099972.1| ATP-dependent RNA helicase DbpA [Herminiimonas arsenicoxydans]
          Length = 506

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 144/379 (37%), Positives = 213/379 (56%), Gaps = 10/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L LSP ++  +   GY + T IQ +++P++LQ  D+   A+TG+GKTA+F + ML  
Sbjct: 48  FAALALSPPMLSNLDALGYREMTSIQAQSLPVILQLRDLIAQAKTGSGKTAAFGIGMLQK 107

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L      ++    L++ PTRELA QV++   +  +   N+ +  L GG P   Q   LE 
Sbjct: 108 LNPTWFAIQ---GLVICPTRELADQVSNELRRLARFADNIKILTLCGGAPMRPQIASLEH 164

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH +R  + ++ ++ LV+DEADRM+DMGF   I  I S  P  RQTL
Sbjct: 165 GAHIVVGTPGRLRDHISRNTINLSTVQTLVLDEADRMVDMGFYEEIAGIVSACPERRQTL 224

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D+++K S  FL++P  ++V      ++  +  +   Y   +   A L +  + 
Sbjct: 225 LFSATYPDDIRKASAEFLRDPVEVKVEAQHDDSQIEQRFYEVGYDDRNAAVATLLKHYRP 284

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+     FCN K +   L   L  QGFS  A++G ++QR R +IL  F   +  ++VA
Sbjct: 285 VSTLA----FCNTKIHCRELAAELRAQGFSALALYGELEQRERDEILVLFANQSCSVLVA 340

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +G V N DV    E +IHRIGRTGR    G A +L A  + K +  IE
Sbjct: 341 TDVAARGLDIQSLGAVINVDVSKDTEVHIHRIGRTGRGQDKGLALSLCAPNEKKWVKLIE 400

Query: 362 KLIEKKVDWLNGDLSSLNP 380
           +  +K   W   DL S  P
Sbjct: 401 EYQQKPAQWF--DLKSAEP 417


>gi|288925364|ref|ZP_06419298.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella buccae
           D17]
 gi|315606787|ref|ZP_07881796.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae
           ATCC 33574]
 gi|288337835|gb|EFC76187.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella buccae
           D17]
 gi|315251452|gb|EFU31432.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae
           ATCC 33574]
          Length = 613

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 138/377 (36%), Positives = 226/377 (59%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+S  +  A+ + G+  P P+Q + IP +L  ++DV  +AQTGTGKTA++ LP   
Sbjct: 4   FEELGVSEDIRRAIEELGFENPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAYGLP--- 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
           +++K  A  +  + +IL PTREL  Q+AD+   + K  + L VA + GG     Q + L+
Sbjct: 61  VVQKTDATDKTTQAVILSPTRELCLQIADDLNAFSKYIDGLHVAAVYGGADIGPQIRTLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR++D  NRG   ++ +  +V+DEAD ML+MGF   I  I   +P    T
Sbjct: 121 HGAQIIVATPGRLIDLINRGVAKLDQVNNIVLDEADEMLNMGFSESINAIFETLPDDHNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E++++++N+L + K I V + +  AE + H +    A+   K   L++++ 
Sbjct: 181 LLFSATMSREVERIAKNYLHDHKEIVVGSRNEGAEHVNHIYYLVNAK--DKYLALKRVVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   IIFC  K     +   L K G++  A+HG++ Q+ R   +  F+  T+Q +V
Sbjct: 239 FYPHI-FAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRRHTVQFLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G + +++   +   +  I
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHTREKFKVRQI 357

Query: 361 EKLIEKKVDWLNGDLSS 377
           EK I K  ++++G L S
Sbjct: 358 EKQIGK--EFVDGTLPS 372


>gi|330014982|ref|ZP_08308018.1| ATP-independent RNA helicase DbpA [Klebsiella sp. MS 92-3]
 gi|328532472|gb|EGF59268.1| ATP-independent RNA helicase DbpA [Klebsiella sp. MS 92-3]
          Length = 457

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 141/382 (36%), Positives = 218/382 (57%), Gaps = 9/382 (2%)

Query: 3   FADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L + P    A L + GY+  T +Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLTVLPAAQLANLNELGYLSMTSVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++  R   +   +L+L PTRELA QVA    +  +   N+ + +L GG PF AQ   L+
Sbjct: 64  HIDPARFETQ---SLVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ ++ LV+DEADRMLDMGF   I  +    P  RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +  +S    +NP+ IE++T  +    IE  F         K ALLQ+LL 
Sbjct: 181 LLFSATWPAAIAAISGRVQRNPQTIEIDTVDAL-PAIEQQFFEV--SRHGKIALLQRLL- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN K++   +C +L   G S  ++HG+++QR R + L  F  G+++++V
Sbjct: 237 SQHQPASCVVFCNTKRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +    +
Sbjct: 297 ATDVAARGLDIKSLALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQRATIL 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPL 382
             +++  ++WL     +   PL
Sbjct: 357 ADMLQLSLNWLPAPTGNTIAPL 378


>gi|196000560|ref|XP_002110148.1| hypothetical protein TRIADDRAFT_21567 [Trichoplax adhaerens]
 gi|190588272|gb|EDV28314.1| hypothetical protein TRIADDRAFT_21567 [Trichoplax adhaerens]
          Length = 424

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 211/349 (60%), Gaps = 7/349 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           + +PT IQ + IP+ L   D+ G+A+TG+GKTA+FVLP+L  L     R+     LIL P
Sbjct: 15  WKQPTKIQCEAIPVALTGKDIIGLAETGSGKTAAFVLPILQALLDKPQRLF---ALILTP 71

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF-NR 139
           TRELA Q+++  E  G +  +  A++IGGI    Q+  L +   ++I TPGR+ DH  N 
Sbjct: 72  TRELAFQISEQIEALGSSIGVQCAVIIGGIDMMTQSIMLAKKPHIIIGTPGRLADHLANT 131

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
               +  ++ LV+DEADR+L+M F   +  I S++P  R+T LFSATMT +++K+    +
Sbjct: 132 KGFSLRPLKYLVMDEADRILNMDFEAEVDKILSVLPKERRTYLFSATMTKKVKKLQRASV 191

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
           Q+P +IEV+T  +T E ++  ++   A+Y K C L+  L  ++    + ++FC    N  
Sbjct: 192 QDPVKIEVSTKYTTVEKLQQTYIFVPAKY-KDCYLVSIL--NELAGNSFMVFCATCINTQ 248

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            +   L   GF+   +HG + Q  R+  L  FK     ++VA+D+A+RGLDIP V  V N
Sbjct: 249 RIGLMLRNLGFNAIPLHGQMSQSKRLGALHKFKSKESSILVATDVASRGLDIPHVDIVIN 308

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           FD P+ +++YIHR+GRT RAGR G++   V + D++    IE+LI KK+
Sbjct: 309 FDAPSHSKDYIHRVGRTARAGRSGRSIIFVTQYDVELFQRIEQLIAKKL 357


>gi|194224511|ref|XP_001501169.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
           [Equus caballus]
          Length = 724

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 138/363 (38%), Positives = 210/363 (57%), Gaps = 1/363 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 236 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 295

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++  +  ++T  L +GG+  ++Q   L 
Sbjct: 296 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALR 355

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 356 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 415

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 416 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 475

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 476 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 535

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K +  
Sbjct: 536 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 595

Query: 360 IEK 362
           I K
Sbjct: 596 IVK 598


>gi|126642301|ref|YP_001085285.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii ATCC
           17978]
          Length = 358

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 137/352 (38%), Positives = 212/352 (60%), Gaps = 12/352 (3%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-----EKGRARVRMPRTLILE 79
           TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  L     ++ R R   PR LIL 
Sbjct: 2   TPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVINDLLNNPVQEQRFRGE-PRALILA 60

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG-ADVLICTPGRILDHFN 138
           PTRELA Q+  + +   K  NL +  L+GG+ F+ Q K+L+    D+++ TPGR++D   
Sbjct: 61  PTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQLDANFVDIMVATPGRLIDFVE 120

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TRQTLLFSATMTDELQKVSE 196
           + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P    RQTL+FSAT + ++  ++ 
Sbjct: 121 QKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQRQTLMFSATFSYDVLNLAR 180

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
            +L  P  +E+     T   +E        Q   K  LLQ +L+ ++ +   +IF N++ 
Sbjct: 181 QWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQ--DKYRLLQDILR-EEPIDKVMIFANRRD 237

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
            V  L   L+K G+ V  + G I Q  R+K+L  FK+G   +M+A+D+A RG+ +  V H
Sbjct: 238 QVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHNIMIATDVAGRGIHVDGVSH 297

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           V NF +P ++++Y+HRIGRTGRAG  G + + ++++D  ++  IEK I KK+
Sbjct: 298 VVNFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDAFYLPEIEKAIGKKL 349


>gi|78357523|ref|YP_388972.1| DEAD/DEAH box helicase-like [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219928|gb|ABB39277.1| DEAD/DEAH box helicase-like protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 530

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 139/367 (37%), Positives = 212/367 (57%), Gaps = 9/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA   L P ++ AV   G+V PTPIQ K +P  L   D+ G+A TGTGKTA+FVLP+L
Sbjct: 56  VSFARFSLHPALIEAVSARGFVNPTPIQEKALPPALAGQDILGLAATGTGKTAAFVLPLL 115

Query: 61  TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  +G +     R L++ PTREL AQ+ +  +   +   L  A + GG+   AQ  +L
Sbjct: 116 HRLLLQGESARGTLRALVVAPTRELVAQIHEEVKTLARFCRLRSATVYGGVGMHAQTVQL 175

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++  PGR+LDH  RG   ++++++LV+DEAD M DMGF+  ++ I       +Q
Sbjct: 176 RTGVDIVLACPGRLLDHVRRGHADLSHVDMLVLDEADMMFDMGFLSDVREILHCTRVRKQ 235

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   L++++E  L+ P RIE++T  + A T+ H           K  LL+ +L
Sbjct: 236 TMLFSATMPAPLRELAEECLRQPVRIELDT-CAIAPTVRHSLCPVPKHL--KTPLLKYVL 292

Query: 240 Q--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  ++D++   ++F   +     L   L K G     + GN+ Q  R   L  F+ GT +
Sbjct: 293 RAFARDSV---LVFVRTRHGARRLWQQLVKSGIEATCLQGNLSQGRRRAALEGFRRGTFR 349

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MVA+D+AARG+D+  VG+V N+D P   E  +HR GRTGRA   G A T V +ED   +
Sbjct: 350 VMVATDIAARGIDVSQVGYVINYDFPPSVEACVHRAGRTGRASNSGVALTFVTQEDEPQV 409

Query: 358 DAIEKLI 364
             +E+++
Sbjct: 410 RTLERVL 416


>gi|86157651|ref|YP_464436.1| DEAD/DEAH box helicase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774162|gb|ABC80999.1| DEAD/DEAH box helicase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 628

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 131/363 (36%), Positives = 208/363 (57%), Gaps = 5/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+GLS  V  AV + GY KPTP+Q  T   +    DV   ++TGTGKTA+F +P+L  
Sbjct: 22  FDDMGLSEPVRRAVAEHGYTKPTPVQSATFRPIRDGKDVIVRSKTGTGKTAAFTIPILER 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +  GR   R P  L++ PTRELA QVA+      K+ +L V  + GG     Q  KL+ G
Sbjct: 82  IPDGR---RKPSALVMCPTRELAIQVAEEVTALAKHRDLGVVTIYGGASMGDQLDKLKAG 138

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A++++ TPGRI DH  R  L +  + +  +DEAD ML+MGF   +  I   +P   Q LL
Sbjct: 139 AEIVVGTPGRIYDHIRRKTLRLEEVMVCCLDEADEMLNMGFFEEVTRILDHLPADVQQLL 198

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +++++  ++L +P+ I ++      E I +    T   Y K   LL  +    
Sbjct: 199 FSATVPADIEQIIHDYLTDPETILLSGDEYKVENINNVMYPTVDAYPKPRNLLYMI--GM 256

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  +  IIFCN + +   +   L + G+    ++G++ Q+ R ++++  K G ++ MVA+
Sbjct: 257 EEPEAAIIFCNTRSDTSLVTAVLNRNGYDAELLNGDLPQKERERVMAKVKRGEVRFMVAT 316

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI D+ HV N+ +P     ++HR+GRTGR G+ G + +LV+  D+  + A++K
Sbjct: 317 DIAARGIDISDLSHVINYSLPEDPAVFLHRVGRTGRIGKKGTSLSLVSGGDLHTLTALQK 376

Query: 363 LIE 365
             E
Sbjct: 377 KYE 379


>gi|315127597|ref|YP_004069600.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. SM9913]
 gi|315016111|gb|ADT69449.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. SM9913]
          Length = 408

 Score =  251 bits (640), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 137/370 (37%), Positives = 203/370 (54%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++  L  K++ A+   GY  PT IQ + IP  LQ  D+   A TGTGKTA+F++P +
Sbjct: 1   MQFSEFDLDDKLLNAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAI 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +++  R      R LI+ PTRELA Q+ +  E   K   L + ++ GGI +    +  
Sbjct: 61  QYLMDFPRRDPGFARVLIMTPTRELAYQIHEQCELLAKQTQLKIGVVTGGINYGTHKEIF 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E   D+LI TPGR++++         N+E+L++DEADRMLDMGF   +  I       RQ
Sbjct: 121 ENNNDILIATPGRLMEYLETENFHAENVEMLILDEADRMLDMGFRKEMLRICDEAKNRRQ 180

Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             LFSAT+  D ++  +E  L +P  +E  +       I H +V     Y  K  LL   
Sbjct: 181 CFLFSATLEGDSVELFAERILNDPALLEAESSRKEKAKI-HQWVHLADDYRHKLELLVNT 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   D  K  I+F   ++ +  L   L   G     + G + Q  RMK + NF  G  ++
Sbjct: 240 LNGPDVSK-AIVFVKTRERLETLIGELTNNGVKAAWLRGEMPQDKRMKAMENFHSGKTRI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+ HV NFD+P  A+ Y+HRIGRTGRAG+ G A +L+   DI  + 
Sbjct: 299 LVATDVAARGIDVADISHVINFDMPRTADVYVHRIGRTGRAGKKGIAISLIEAHDIGILY 358

Query: 359 AIEKLIEKKV 368
            +E+ IE+K+
Sbjct: 359 KVERYIEQKL 368


>gi|10039335|dbj|BAB13310.1| Vasa-related protein PoVAS1 [Ephydatia fluviatilis]
          Length = 546

 Score =  251 bits (640), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 142/345 (41%), Positives = 202/345 (58%), Gaps = 17/345 (4%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK------GRARVRMP 73
           GY +PTP+Q   IP++L   D+   AQTG+GKTA+F+LP +T L K       +A  + P
Sbjct: 112 GYKRPTPVQKYAIPIILAGRDLMACAQTGSGKTAAFLLPAITKLIKEQVPGGSQAETQSP 171

Query: 74  RTLILEPTRELAAQVADNFEKY--GKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
           + LI+ PTREL  Q+ +   K+  G  Y   VA   GG     Q K+LE G ++L+ TPG
Sbjct: 172 QVLIISPTRELTLQIYNEARKFTHGTMYRPVVAY--GGTAVGYQLKQLEGGCNILVGTPG 229

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS--LVPFT--RQTLLFSATM 187
           R+LD  NRG++ ++ I +L++DEADRMLDMGF P I+ I S   +P T  RQTL+FSAT 
Sbjct: 230 RLLDFLNRGQVQLDQISVLILDEADRMLDMGFEPEIRKIVSNYSMPETGKRQTLMFSATF 289

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
            +E+Q+++  FL N   + V         I    +    ++ K+  L + L  S   +  
Sbjct: 290 PEEIQRIANEFLSNYLFLTVGRVGGATSDITQRIIEV-DEFGKREKLSEIL--SATGVDR 346

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            ++F   K+N   L   L ++ F   +IHG+  QR R + L +F+ G   ++VA+ +AAR
Sbjct: 347 TLVFVETKRNADFLATYLSQESFPTTSIHGDRFQREREEALRDFRSGLAPVLVATSVAAR 406

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           GLDIPDV HV N+D+PN  E Y+HRIGRTGR G  G A     KE
Sbjct: 407 GLDIPDVKHVVNYDLPNNIEEYVHRIGRTGRIGNQGLATAFFHKE 451


>gi|224539911|ref|ZP_03680450.1| hypothetical protein BACCELL_04822 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518465|gb|EEF87570.1| hypothetical protein BACCELL_04822 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 435

 Score =  251 bits (640), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 219/371 (59%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+ +V+ A+    + + TPIQ K+IP++L+  D+  +AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELQLNDQVLDALEAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             L +G         +++ PTRELA Q+    E +     ++   + GG   I FE Q K
Sbjct: 61  NKLSEGGHPEDAINCIVMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLMLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFFDDIMQIVKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++   L NP  +++       + ++  +V    Q   K  +++ 
Sbjct: 181 RQTIMFSATMPAKIQQLANTILNNPAEVKLAVSRPADKIVQAAYVCYENQ---KLGIIRS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   Q T +  IIF + K  V  +  +L+    +V  +H +++Q  R +++  FK G I 
Sbjct: 238 LFAEQ-TPERVIIFASSKLKVKEVTKALKMMKLNVGEMHSDLEQAQREEVMHEFKAGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V +++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQSNF 356

Query: 358 DAIEKLIEKKV 368
             IE  +E+ +
Sbjct: 357 KQIENFLERDI 367


>gi|74152734|dbj|BAE42635.1| unnamed protein product [Mus musculus]
          Length = 929

 Score =  251 bits (640), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 133/357 (37%), Positives = 211/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +       ++  SK   L +
Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++   +  + ++F  +K N   L  +L+++G ++  +HG++DQ    K++S+FK+  I
Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSEGNKVISDFKKKDI 549

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606


>gi|289664841|ref|ZP_06486422.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 493

 Score =  251 bits (640), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 138/375 (36%), Positives = 224/375 (59%), Gaps = 10/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L P ++  +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++
Sbjct: 9   LTFSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVTVV 68

Query: 61  TILEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L    A    +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q 
Sbjct: 69  NRLLNRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQR 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L +G DV+I TPGR++D+  + K++ ++  EI V+DEADRM D+GFI  I+ +   +P
Sbjct: 129 ELLLQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
              TRQTLLFSAT++  + +++   +  P+++ V T + TA  +       +    +K  
Sbjct: 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIY--FPSDEEKQT 246

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  LL   +  +  ++F N K  V  +  +LE+ G+ V  + G++ Q+ R  +L+ F++
Sbjct: 247 LLLGLLSRSEGART-MVFVNTKAFVERVARALERHGYRVGVLSGDVPQKKRESLLNRFQK 305

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +  
Sbjct: 306 GQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERY 365

Query: 354 IKHIDAIEKLIEKKV 368
              +  IE  IE+K+
Sbjct: 366 AMSLPDIEAYIEQKI 380


>gi|283832995|ref|ZP_06352736.1| ATP-independent RNA helicase DbpA [Citrobacter youngae ATCC 29220]
 gi|291071607|gb|EFE09716.1| ATP-independent RNA helicase DbpA [Citrobacter youngae ATCC 29220]
          Length = 457

 Score =  251 bits (640), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 141/365 (38%), Positives = 215/365 (58%), Gaps = 8/365 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY++ TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   A +   ++L+L 
Sbjct: 22  GYLEMTPVQAAALPAILAGRDVRVQAKTGSGKTAAFGLGLLQHID---AALFQMQSLVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF AQ   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +G + ++ +  LV+DEADRMLDMGF   I  +    P +RQTLLFSAT  + +  +S   
Sbjct: 139 KGTVSLDALNTLVMDEADRMLDMGFSDAIDEVIRFAPASRQTLLFSATWPEAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            Q+P  IE++T  +    IE  F  T +    K  LLQ+LL SQ    + ++FCN KK+ 
Sbjct: 199 QQDPLTIEIDTVDAL-PAIEQQFFETSSH--GKIPLLQKLL-SQYQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L   G S  ++HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           NF++    E +IHRIGRT RAG  G A +  A E+ +  + + ++++ K++WL    +  
Sbjct: 315 NFELAWDPEVHIHRIGRTARAGNSGLAISFCAPEEAQRANILSEMLQLKLNWLPAPGNGS 374

Query: 379 NPPLE 383
             PLE
Sbjct: 375 ILPLE 379


>gi|261343045|ref|ZP_05970903.1| ATP-dependent RNA helicase RhlB [Enterobacter cancerogenus ATCC
           35316]
 gi|288314609|gb|EFC53547.1| ATP-dependent RNA helicase RhlB [Enterobacter cancerogenus ATCC
           35316]
          Length = 421

 Score =  251 bits (640), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 150/390 (38%), Positives = 219/390 (56%), Gaps = 15/390 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKV+ A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVIEALETKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV--DWLNGD--LSSLNPP 381
           ++ AIE  I   +     N D  LS L PP
Sbjct: 367 NLPAIETYIGHSIPQSKYNPDALLSELPPP 396


>gi|240950103|ref|ZP_04754398.1| ATP-dependent RNA helicase SrmB [Actinobacillus minor NM305]
 gi|240295404|gb|EER46173.1| ATP-dependent RNA helicase SrmB [Actinobacillus minor NM305]
          Length = 445

 Score =  251 bits (640), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 134/368 (36%), Positives = 212/368 (57%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L LSP+++ A+   GY +PT +Q +TIP  L   D+ G A TGTGKTA+F+LP +
Sbjct: 8   LTFEELDLSPQLLKALHKKGYKRPTSVQAQTIPYALDGRDLLGSAPTGTGKTAAFLLPAI 67

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QVA+  E+  +  NL++A + GG+ ++   +  
Sbjct: 68  QHLLDYPRRKPGAPRILILTPTRELAMQVAEQAEELAEFTNLSIATITGGVAYQNHGEVF 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++ +          +EIL+ DEADRML MGF    + I +   + + 
Sbjct: 128 NKNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187

Query: 180 TLLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           T LFSAT+  EL    +E  L +P +IE        + I+  +         K  LL +L
Sbjct: 188 TWLFSATLEGELLVDFAERLLNDPVQIEAEPSRRERKKIQQWYYHA-DNLDHKTKLLARL 246

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   + M+  I+F  +++ V  L  +L K+G     + G++ Q  R + ++  KE  + +
Sbjct: 247 INDFE-MEKVIVFVRRREAVRELSDTLRKRGLRSTYLEGDMAQTQRNQAINRLKENVVNV 305

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V++D+AARG+DI DV  V NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D K + 
Sbjct: 306 LVSTDVAARGIDIDDVDFVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLG 365

Query: 359 AIEKLIEK 366
            I++  E+
Sbjct: 366 KIKRYTEE 373


>gi|146313637|ref|YP_001178711.1| ATP-dependent RNA helicase RhlB [Enterobacter sp. 638]
 gi|189040028|sp|A4WG30|RHLB_ENT38 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|145320513|gb|ABP62660.1| DEAD/DEAH box helicase domain protein [Enterobacter sp. 638]
          Length = 421

 Score =  251 bits (640), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 151/390 (38%), Positives = 221/390 (56%), Gaps = 15/390 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L  KV+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHAKVIEALENKGFHYCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSAFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSNPAMADRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P T 
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPTP 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV--DWLNGD--LSSLNPP 381
           ++ AIE  I   V     N D  LS L PP
Sbjct: 367 NLTAIETYIGHSVPQSKYNPDALLSELPPP 396


>gi|323700588|ref|ZP_08112500.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. ND132]
 gi|323460520|gb|EGB16385.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
           ND132]
          Length = 551

 Score =  251 bits (640), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 142/398 (35%), Positives = 219/398 (55%), Gaps = 24/398 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F +LGLS   + A+   G+  PTPIQ  TIP +L    D+ G AQTGTGKTA+F LP++ 
Sbjct: 4   FQELGLSGSTLDALTSKGFTAPTPIQALTIPRLLSGTRDIVGQAQTGTGKTAAFGLPVIE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             E+G  RV+   +LIL PTRELA QVA+  +       + V  + GG     Q K L +
Sbjct: 64  AAEEGARRVQ---SLILAPTRELAIQVAEEIDSLKGGKRIRVLPVYGGQAIHMQLKALRQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGRI+DH  RG L ++ +   ++DEAD M +MGF+  ++ I +     R+TL
Sbjct: 121 GVDVVVGTPGRIMDHLERGSLRIDQLTYFILDEADEMCNMGFVDDVRAILASANADRRTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           +FSATM  E+  ++  F+ +   + V    S A      F  +A   ++   C ++    
Sbjct: 181 MFSATMGGEVMAIAREFMGDFDVVRVKPEVSDAPLTRQVFHEIADSDRFEALCRVI---- 236

Query: 240 QSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              D   +  G++F   + +   +   L ++G+    IHG+++Q  R KILS F+E    
Sbjct: 237 ---DARPDFYGLVFVRTRADADLVAARLTQRGYPAEPIHGDLNQAQREKILSGFRERKAT 293

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+PD+ HV NF +P   + ++HR GRTGRAG+ G A TL+   + + +
Sbjct: 294 ILVATDVAARGIDVPDLTHVVNFALPQDPQTFVHRTGRTGRAGKQGVAITLITPNEFRKL 353

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
             I K         +  +     PL +I+   H+  RK
Sbjct: 354 MYIAK---------STGIDIAKEPLPRIEDVIHSKKRK 382


>gi|304382917|ref|ZP_07365399.1| ATP-dependent RNA helicase DeaD [Prevotella marshii DSM 16973]
 gi|304335942|gb|EFM02190.1| ATP-dependent RNA helicase DeaD [Prevotella marshii DSM 16973]
          Length = 420

 Score =  251 bits (640), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 138/353 (39%), Positives = 213/353 (60%), Gaps = 12/353 (3%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84
           TPIQ K IP +L  HD+ G+AQTGTGKTA+++LP+L+ L  G         +I+ PTREL
Sbjct: 25  TPIQEKCIPEILNGHDIMGVAQTGTGKTAAYLLPILSRLADGGFPDETINCVIMSPTREL 84

Query: 85  AAQVADNFEKYGKNYNL----TVALLIG--GIPFEAQNKKLERGADVLICTPGRILDHFN 138
           A Q+    + +G  Y L    +VA+  G  G  ++ + K L  GADV+I TPGR++ H +
Sbjct: 85  AQQIDQAMQGFG--YYLQDVSSVAVYGGNDGNRYDQEVKSLRLGADVVIATPGRLISHLS 142

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
            GK+  + +   V+DEADRMLDMGF   I  I   +P T Q ++FSATM  ++++++   
Sbjct: 143 LGKVDFSRVSFFVLDEADRMLDMGFSDDILTIFKQLPKTCQIIMFSATMPSKIEELAATM 202

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           L+NP  +++   S  AE I+      Y    +K  +++ + ++ +  +  IIF  +K  V
Sbjct: 203 LKNPVEVKIAV-SKPAEKIKQTAYVCYE--PQKLGIIKHIFKAGNLTRT-IIFSGKKNKV 258

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            ++  +L++       +H ++ Q  R +I+  FK G I ++VA+D+ ARG+DI D+  V 
Sbjct: 259 KDINRALQRLHIKSGEMHSDLTQAERDEIMYRFKSGAIDVLVATDIVARGIDIDDIYTVI 318

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
           N+DVP  AE+Y+HRIGRT RA R G A T V+  DI +  +IEK +EK+V+ L
Sbjct: 319 NYDVPRDAEDYVHRIGRTARAERDGNAITFVSDADISYFQSIEKFLEKEVEKL 371


>gi|292670294|ref|ZP_06603720.1| ATP-dependent RNA helicase DeaD [Selenomonas noxia ATCC 43541]
 gi|292648025|gb|EFF65997.1| ATP-dependent RNA helicase DeaD [Selenomonas noxia ATCC 43541]
          Length = 425

 Score =  251 bits (640), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 135/370 (36%), Positives = 215/370 (58%), Gaps = 10/370 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LG+S  +   +   G  +PTP+Q + IP +    DV   AQTGTGKT SF+LP+L
Sbjct: 2   MKFDALGVSEVLTALLQRQGITEPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLSFLLPLL 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK + +  + + L++ PTRELA Q+A   E  G+   +   ++ GG   E Q +KL 
Sbjct: 62  ---EKIKPQGTVAQALVIAPTRELAIQIARVAEPLGEPLGIGTIVIYGGADIERQKEKLR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++I TPGR+LDH  RG L + ++  +V+DEAD ML MGFI  ++++        Q 
Sbjct: 119 RRPQLVIGTPGRLLDHVRRGTLALGSVNKIVLDEADEMLKMGFIEDVESLLGCAAQDYQL 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
            LFSATM + + ++++ F+ NP  I +   ++T  +IE     V+   +  + CA +   
Sbjct: 179 ALFSATMPERIVRLTKKFMTNPAHIRIEGETTTLASIEQIALSVSEGEKIDRLCASI--- 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +++     ++FC  K+    +   L ++G+ V A+ G++ Q  R  +L  F+E  +Q+
Sbjct: 236 --NEEAPYLAMVFCATKERTHTVMMELARRGYLVDALSGDLTQTQRAFVLRRFREAKLQI 293

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+AARGLDI  V HV+N+D+P    +YIHRIGRTGRAG  GKA TLVA    + + 
Sbjct: 294 LCATDIAARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGAQGKAITLVAAHQHEKLR 353

Query: 359 AIEKLIEKKV 368
            +E  +++++
Sbjct: 354 KMEAALKERL 363


>gi|297571784|ref|YP_003697558.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296932131|gb|ADH92939.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 520

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 136/370 (36%), Positives = 207/370 (55%), Gaps = 9/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD G+S  +V A+   G   P PIQ  T+P+ L+  D+ G A+TGTGKT  F +PM+  
Sbjct: 39  FADYGVSAPIVDALAAKGISHPFPIQALTLPVALKGSDIIGQAKTGTGKTLGFGIPMIER 98

Query: 63  L----EKG---RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                E G    A    P+ L + PTRELA QVA +     KN ++ +  + GG  +E Q
Sbjct: 99  CIGPSEPGFDALAHPGAPQGLAVVPTRELAKQVAQDLRDAAKNRSIRIVEVYGGRAYEPQ 158

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K LE+GA++++ TPGR++D      L +  +  +V+DEAD MLD+GF+  ++ I S  P
Sbjct: 159 IKDLEKGAEIIVGTPGRLIDLMKHRTLNLGAVRAVVLDEADEMLDLGFLEDVEKILSATP 218

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234
            TR T+LFSATM   +  ++  ++ +   I        + T++      Y  ++  K  +
Sbjct: 219 PTRHTMLFSATMPGPVIAMARRYMSHATHIRAQAHDDESTTVQSVRQVVYRAHALNKIEV 278

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L ++LQ++      IIF   K+    +   L  +GF+  A+HG++ Q +R + L  F+ G
Sbjct: 279 LARILQARGRGLT-IIFTRTKRTAARVAEDLAARGFATGALHGDLGQGAREQALRAFRHG 337

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I ++VA+D+AARG+D+ +V HV N+  P   + Y+HRIGRTGRAG  G A T V  ED 
Sbjct: 338 KIDVLVATDVAARGIDVDNVTHVINYQAPEDEKTYVHRIGRTGRAGHSGTAITFVDWEDT 397

Query: 355 KHIDAIEKLI 364
                I KL+
Sbjct: 398 PKWAVINKLL 407


>gi|289825492|ref|ZP_06544699.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 415

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 141/366 (38%), Positives = 212/366 (57%), Gaps = 4/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  
Sbjct: 6   FSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT+
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTM 185

Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  D ++  +E  L++P  +  N PS+      H +      +  K ALL+ LL+
Sbjct: 186 LFSATLEGDAIKDFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADNFEHKVALLKHLLK 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     I+F  +++ V  L  +L   G + C + G + Q  R + +    +G + ++V
Sbjct: 245 -QDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DIPDV HV NFD+P   + Y+HRIGRTGRAGR G A +LV   D   +  I
Sbjct: 304 ATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLLLKI 363

Query: 361 EKLIEK 366
            + IE+
Sbjct: 364 GRYIEE 369


>gi|295095196|emb|CBK84286.1| Superfamily II DNA and RNA helicases [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 422

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 153/410 (37%), Positives = 225/410 (54%), Gaps = 15/410 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKV+ A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVIEALETKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAVN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV--DWLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           ++ AIE  I   +     N D  LS L PP         N  R++   P+
Sbjct: 367 NLPAIETYIGHSIPQSKYNPDALLSELPPPKRLTRPRSGNGPRRSGGAPR 416


>gi|296273501|ref|YP_003656132.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296097675|gb|ADG93625.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 412

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 216/368 (58%), Gaps = 12/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L LS ++  ++ +  Y+KPT IQ K IPLVL+  D+   AQTG+GKTASFVLP+L
Sbjct: 1   MSFFKLKLSDQINKSLTENRYIKPTEIQEKVIPLVLEHKDIIAKAQTGSGKTASFVLPIL 60

Query: 61  TILEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT--VALLIGGIPFEA 114
            +  K    G+ ++R    L+L PTRELA QVA  F  + K  N    V  +IGG     
Sbjct: 61  NLWYKQNYEGKPKIR---CLVLTPTRELALQVATAFLTFSKYMNKKPKVVSVIGGESIGE 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   +++G DV++ T GR+LD   + ++ ++N++  V+DEAD+MLD GF   ++ +  ++
Sbjct: 118 QLLNIQKGCDVIVATTGRLLDILKKKQMDLSNLDFFVLDEADKMLDFGFEEELELLLEVL 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT   ++  ++    +NP  I +    +T ++I    +    +   + AL
Sbjct: 178 PKKRQNLLFSATYPTKMLNIASKITENPIEISIENEEATVQSINQRVIEVNKE--NRSAL 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L+ L++ ++  +  ++F   K++  NL     K GF   + HG++ Q  R + L  FK  
Sbjct: 236 LRHLIK-EENWQQVLVFMANKRSCDNLAFKFRKYGFEAESFHGDLIQEERNETLEGFKAK 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++ A+D+AARGL I ++  V N+D+P    +YIHRIGRTGRAG+ G A + ++ ED 
Sbjct: 295 KIKVLFATDIAARGLHIENISCVVNYDLPRATADYIHRIGRTGRAGKSGIAVSFISHEDK 354

Query: 355 KHIDAIEK 362
           +H   IEK
Sbjct: 355 EHFALIEK 362


>gi|212526914|ref|XP_002143614.1| ATP-dependent RNA helicase , putative [Penicillium marneffei ATCC
           18224]
 gi|210073012|gb|EEA27099.1| ATP-dependent RNA helicase , putative [Penicillium marneffei ATCC
           18224]
          Length = 474

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 141/371 (38%), Positives = 218/371 (58%), Gaps = 14/371 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL P++  A    GY  PT IQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 47  FKDLGLIPQLCEACETLGYKAPTAIQAESIPLALQNRDLIGLAETGSGKTAAFALPIL-- 104

Query: 63  LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +A +  P+    L+L PTRELA Q+++ FE  G   ++   +L+GG+    Q   +
Sbjct: 105 ----QALMDKPQPFFGLVLAPTRELAYQISEAFEALGSTISVRSVVLVGGMDMVPQAIAI 160

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +++ TPGR+LDH    K   + +++ LV+DEADR+LDM F P I  I  ++P  R
Sbjct: 161 GKRPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDMDFGPIIDKILKVLPRER 220

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +T LFSATM+ +++ +    L NP R+ V++    T  T+   ++  +  +  K   L  
Sbjct: 221 RTFLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQYYM--FIPHKHKDVHLIW 278

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL ++   +  IIF         L       GFS  A+HG + Q SR+  +S F+  T  
Sbjct: 279 LL-NEHIGQTTIIFTRTIHETNRLALLTRFLGFSAIALHGQLSQSSRLASISKFRSKTRS 337

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARGLDIP V  V N+D+   ++ ++HRIGRT RAG+ GKA +LV + D++  
Sbjct: 338 ILIATDVAARGLDIPSVDLVLNYDLAADSKTHVHRIGRTARAGKSGKAISLVTQYDVEVW 397

Query: 358 DAIEKLIEKKV 368
             IEK ++KK+
Sbjct: 398 LRIEKALDKKL 408


>gi|153005404|ref|YP_001379729.1| DEAD/DEAH box helicase domain-containing protein [Anaeromyxobacter
           sp. Fw109-5]
 gi|152028977|gb|ABS26745.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp.
           Fw109-5]
          Length = 680

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 128/360 (35%), Positives = 210/360 (58%), Gaps = 5/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  V  A+ + GY +PTP+Q+ T   V    DV   ++TGTGKTA+F +P+L  
Sbjct: 22  FDELGLSEPVRRAIAEHGYERPTPVQVSTFRPVRDGKDVIVRSKTGTGKTAAFAIPILER 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +  GR   R P  L++ PTRELA QVA  F    K+ +L+V  + GG     Q +KLE G
Sbjct: 82  IADGR---RRPSALVMCPTRELAIQVAQEFTALAKHRDLSVVAVYGGASMGEQLQKLEAG 138

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A++++ TPGRI DH  R  L ++   +  +DEAD ML+MGF   +  I   +P   Q LL
Sbjct: 139 AEIIVGTPGRIYDHIRRRTLKLDETMVCCLDEADEMLNMGFFEEVTRILDNLPKDCQQLL 198

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +++++  ++L +P+ I ++    + E I +        Y K   LL  +    
Sbjct: 199 FSATVPADIEQIIRDYLTDPETILLSGDEYSVENIHNVMYPAVDAYPKPRNLLYMI--EM 256

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  +  I+FCN + +   +   L + G+    ++G++ Q+ R ++++  K G ++ MVA+
Sbjct: 257 EEPETAIVFCNTRNDTSLVAAVLNRNGYDAELLNGDLPQKERERVMAKVKRGEVRFMVAT 316

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI D+ HV N+ +P     ++HR+GRTGR G+ G + ++V+  +I  + A++K
Sbjct: 317 DIAARGIDISDLTHVINYSLPEDPAVFLHRVGRTGRIGKKGTSLSIVSGAEIHTLTALQK 376


>gi|170727839|ref|YP_001761865.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169813186|gb|ACA87770.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 428

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 217/369 (58%), Gaps = 6/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+   LSP ++ AV   GY + T +Q K IP+ +   D+   A+TGTGKTA+F LP+L
Sbjct: 1   MKFSAFDLSPLILDAVEVCGYQQLTQVQSKVIPVAVTGCDLMACAETGTGKTAAFALPLL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L++   R  + R LIL PTRELA QVADN  +Y +  +L    + GG     Q K L
Sbjct: 61  QKLLDEFLDRSAL-RGLILTPTRELAIQVADNISRYSQFTSLKTLAVYGGANMNPQRKAL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+ D   +  L ++++  LVIDEADRMLDMGF+  I+ +  LV     
Sbjct: 120 NAGVDILVATPGRLFDFIGQHGLDLSSVTSLVIDEADRMLDMGFVRDIERVKGLVARQHV 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T  FSAT +D+++ +++  L +P  I V T  S +   +  ++       +K  LL +L+
Sbjct: 180 THFFSATYSDDVKCLAQKMLCDPTWINVATSKSASSVEQEVYL---VDKRRKAELLSELV 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  +  ++F + K++  ++   L+  G      HG+  Q +R + L  FK G ++++
Sbjct: 237 -GRNNWQQVLVFASSKESAEHIQKELKLDGLKSAVFHGDKTQGARNRALEEFKSGALRVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N ++P  A++YIHRIGRTGRAG  G A + V   D K ++ 
Sbjct: 296 VATDVAARGLDIHALPLVVNIELPFDAQDYIHRIGRTGRAGLTGHAISFVCPSDEKMLEE 355

Query: 360 IEKLIEKKV 368
           IE LIE+K+
Sbjct: 356 IEALIERKL 364


>gi|302318882|ref|NP_001032894.2| ATP-dependent RNA helicase DDX42 [Danio rerio]
          Length = 908

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 139/391 (35%), Positives = 217/391 (55%), Gaps = 14/391 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D  GIA+TG+GKTA+F+ P+L  
Sbjct: 257 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILVH 316

Query: 63  ------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK Y L    + GG     Q 
Sbjct: 317 IMDQKELEPGEG----PIAVIVCPTRELCQQIHAECKRFGKAYGLRSVAVYGGGSMWEQA 372

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 373 KALQEGAEIVVCTPGRLIDHVKKKATSLQRVTFLVFDEADRMFDMGFEYQVRSIASHVRP 432

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E I    V        K   L 
Sbjct: 433 DRQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQ-IVEVLQSGQDKWGWLT 491

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + L    +  + ++F  +K N   L  +L ++G+S+  +HG++DQ  R K++++FK+  +
Sbjct: 492 RRLVEFTSAGSVLVFVTKKANCEELATNLIQEGYSLGLLHGDMDQSERNKVIADFKKKNL 551

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D   
Sbjct: 552 PVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTTKDTSF 611

Query: 357 IDAIEKLIEKKVDWLNGDLSSL---NPPLEK 384
              + + +E     ++ DL  L   NP   K
Sbjct: 612 AGDLVRNLEGANQSVSKDLLDLAMQNPWFRK 642


>gi|221117600|ref|XP_002163251.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           [Hydra magnipapillata]
          Length = 790

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 136/359 (37%), Positives = 202/359 (56%), Gaps = 11/359 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F   G    ++  +  + Y KPTPIQ + +P+ L   D+ GIA+TG+GKTA+FV PML
Sbjct: 276 ISFGHFGFDDHLMGVIRSSNYSKPTPIQSQAVPVALSGRDIIGIARTGSGKTAAFVWPML 335

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                  +L++G      P  LI  PTREL  Q+    +++GK YNL V    GG     
Sbjct: 336 VHIMAQPVLKEGDG----PIALICAPTRELCQQINSECKRFGKCYNLRVIACYGGGSKWE 391

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q K L++GA++++CTPGR++D        +  +  LV DEADRM DMGF P +++I + V
Sbjct: 392 QTKGLQQGAEIVVCTPGRLIDLIKAKATNLLRVTYLVFDEADRMFDMGFEPQVRSIANNV 451

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQ LLFSATM  +++ +  + L +P RI V       E I        +   K   L
Sbjct: 452 RPDRQCLLFSATMKKKVEWLCRDILSDPIRIVVGELGEANEDIVQAVEVMKSPQQKWNWL 511

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  +++   +  + +IF  +K N   +  +L++QG+ +  IHG+ DQ  R  +L  FK+ 
Sbjct: 512 LSHIVEFT-SGGSVLIFVTKKSNSEEVAANLKEQGYELGLIHGDFDQFERNNVLKQFKQK 570

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
              ++VA+D+AARGLDIP +  V N+DV      + HRIGRTGRAG  G A+TL+  +D
Sbjct: 571 QFLILVATDVAARGLDIPSIKTVINYDVARDITTHTHRIGRTGRAGEKGIAYTLITPQD 629


>gi|126290158|ref|XP_001370541.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Monodelphis domestica]
          Length = 1175

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 149/446 (33%), Positives = 247/446 (55%), Gaps = 23/446 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 518 WVQCGISMKILNSLKKHGYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 577

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 578 IMDQRALEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 633

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 634 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 693

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           V   RQT++FSAT    ++ ++   L  P  ++V   S     +E   +    + +K   
Sbjct: 694 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEE-NKFLK 752

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL+ L   Q++  + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK 
Sbjct: 753 LLELLGHYQES-GSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKN 811

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++ 
Sbjct: 812 GTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQ 871

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            ++   I K +E     L+G  +++   LEK+     +  +    I +KS+GF  +   +
Sbjct: 872 ARYAGDIIKALE-----LSG--TAVPHDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKF 924

Query: 414 SSQKSHIPLKESEKISKLQQDIQEND 439
              +  +   E +K+ K    +Q++D
Sbjct: 925 DETEQAL-ANERKKLQKAALGLQDSD 949


>gi|124491306|gb|ABN12944.1| Lia2p [Tetrahymena thermophila]
          Length = 522

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 149/396 (37%), Positives = 227/396 (57%), Gaps = 26/396 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + D      ++  V  A + KP+PIQ    P+VL  HD+ GIA+TG+GKT SF+LP +
Sbjct: 25  LSWTDTHFPQYIMNEVTHAKFEKPSPIQSLAFPVVLSGHDLIGIAETGSGKTLSFLLPSI 84

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   ++KG      P  L+L PTRELA Q+    E++GK+  L  A + GG    +
Sbjct: 85  VHINAQPTVKKGDG----PIVLVLAPTRELAMQIERESERFGKSSKLKCACIYGGADKYS 140

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L++G DV+I TPGR++D        +  +  LV+DEADRMLDMGF   I+ I   +
Sbjct: 141 QRALLQQGVDVVIATPGRLIDFLESETTTLRRVTYLVLDEADRMLDMGFEIQIRKILGQI 200

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQN-PKRIEVNTPS-STAETIEHCFVATYAQYSKKC 232
              RQTL+FSAT    +Q +++++ +N P  +++     +  E I+     T  Q  K  
Sbjct: 201 RPDRQTLMFSATWPKNVQNLAQDYCKNTPVYVQIGKHELAINERIKQIVYVT-DQSKKIN 259

Query: 233 ALLQQL--LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            L++QL  L  +D +   +IF   KK   ++   L K+GF   AIHG+  Q+ R  +++ 
Sbjct: 260 QLIKQLDCLTQKDKV---LIFAQTKKGCESMSRILNKEGFKCLAIHGDKAQKDRDYVMNK 316

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G  ++++A+D+A+RGLD+ DV HVFN+D P   E+Y+H IGRTGRAG +G A + + 
Sbjct: 317 FKSGECRILIATDVASRGLDVKDVSHVFNYDFPKVMEDYVHSIGRTGRAGAYGCAVSFLT 376

Query: 351 KEDIKHI--DAIEKLIEKK----VDWLNGDLSSLNP 380
            ED K I  + ++ L + K    +D L  DL+S+NP
Sbjct: 377 FEDDKKISREYVQMLHDAKQEIPIDLL--DLASINP 410


>gi|327307140|ref|XP_003238261.1| ATP-dependent rRNA helicase RRP3 [Trichophyton rubrum CBS 118892]
 gi|326458517|gb|EGD83970.1| ATP-dependent rRNA helicase RRP3 [Trichophyton rubrum CBS 118892]
          Length = 474

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 219/369 (59%), Gaps = 10/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DLG+   +  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 51  FKDLGIIDSLCDACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQA 110

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++EK +        L+L PTRELA Q+++ FE  G   ++  A+++GG+   +Q+  L +
Sbjct: 111 LMEKPQPYF----GLVLAPTRELAVQISEAFEALGSLISVRCAVIVGGMDMISQSISLGK 166

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+LDH    K   + N++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 167 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRT 226

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LFSAT++ +++ +    L NP R+ +++    T  T+   ++    +Y K   L+  L 
Sbjct: 227 YLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKY-KDIYLVHIL- 284

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  IIF         L   L   GF    +HG + Q +R+  L  F+ G+  ++
Sbjct: 285 -NEFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDIL 343

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V NFD+P+ ++ YIHR+GRT RAG+ G+A ++V + +++    
Sbjct: 344 VATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQR 403

Query: 360 IEKLIEKKV 368
           IE  + K++
Sbjct: 404 IEAALGKQL 412


>gi|309362056|emb|CAP28713.2| hypothetical protein CBG_09074 [Caenorhabditis briggsae AF16]
          Length = 747

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 149/426 (34%), Positives = 227/426 (53%), Gaps = 49/426 (11%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + G   +V  AV + GY++PTPIQ + IP+ LQ  DV G+A+TG+GKTA+F+LP+L 
Sbjct: 319 NWEESGFPDEVYRAVQEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLV 378

Query: 62  IL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +      E+     + P  +IL PTRELA Q+ +   K+GK   +    +IGG   E Q
Sbjct: 379 WITSLPKIERQEHSDQGPYAIILAPTRELATQIEEETNKFGKLLGIRTVSVIGGASREEQ 438

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL  G +V+I TPGR++D      LL+N    +++DEADRMLDMGF P +Q I   +P
Sbjct: 439 GMKLRMGVEVVIATPGRLMDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKILEYLP 498

Query: 176 FT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
            +                         RQT++F+ATM+  +++++  +L+ P  + +   
Sbjct: 499 ASNMKKDTDEFDNEEALMKGFETRDKYRQTVMFTATMSPAIERLARQYLRRPAVVHIGNA 558

Query: 211 SSTAETIEH-CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269
               E +E   ++ T  +  KK  LL+ +  SQ      I+F N+K    +L   L K G
Sbjct: 559 GKPTERVEQVVYMITKDRKPKK--LLEVI--SQHDKYPIIVFVNRKHGADSLAKGLAKVG 614

Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329
                +HG   Q +R   L   K+   +++VA+D+A RG+DI DV  V N+D+    E+Y
Sbjct: 615 KKTSVLHGGKGQDAREYALKALKDQETKILVATDVAGRGIDIKDVSLVINYDMAKTIEDY 674

Query: 330 IHRIGRTGRAGRHGKAFTLVAKEDIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
            HRIGRTGRAG+HGKA T +  +D   + D  + L+E  +        S  PP    ++A
Sbjct: 675 THRIGRTGRAGKHGKAITFLTADDTAVYYDLKQCLLESPI--------SSCPP----ELA 722

Query: 389 QHNHAR 394
            H  AR
Sbjct: 723 NHEAAR 728


>gi|296105329|ref|YP_003615475.1| ATP-dependent RNA helicase RhlB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059788|gb|ADF64526.1| ATP-dependent RNA helicase RhlB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 421

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 150/390 (38%), Positives = 220/390 (56%), Gaps = 15/390 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKV+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVIEALENKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLTQATGLKIGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV--DWLNGD--LSSLNPP 381
           ++ AIE  I   +     N D  LS L PP
Sbjct: 367 NLPAIEAYIGHSIPQSKYNPDALLSELPPP 396


>gi|154497003|ref|ZP_02035699.1| hypothetical protein BACCAP_01296 [Bacteroides capillosus ATCC
           29799]
 gi|150273402|gb|EDN00530.1| hypothetical protein BACCAP_01296 [Bacteroides capillosus ATCC
           29799]
          Length = 400

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 138/350 (39%), Positives = 203/350 (58%), Gaps = 6/350 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +++ADLGLS +V+ A+   GYV+ TP+Q   IP  ++  DV   A TGTGKT +F +PM+
Sbjct: 12  VNYADLGLSAEVMKAIDKKGYVRATPVQAGAIPYFMEWKDVIAKAPTGTGKTFAFGIPMV 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
             ++     V+    L+L PTRELA Q+ D      +    +    L GG P E Q   L
Sbjct: 72  EHIDPESDAVQ---ALVLAPTRELALQIQDELRDLCEFKEGVRSVCLYGGAPIEKQITTL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   +++ TPGR++DH  R  + ++ +E +V+DEADRMLDMGFI  +  I   +   + 
Sbjct: 129 KKHPQIVVATPGRLMDHMKRRTVKLDKVETVVLDEADRMLDMGFIHDVTRILDQIKSRKN 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSAT++ E+  +S  + ++P  I V         I+   +    +  K   ++  L 
Sbjct: 189 LGLFSATISREVMDISWVYQRDPVEIVVRPDEENKPDIQQYRIDLEGRGDKLETMVALL- 247

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  I FCN K     L   L+ +G +  AIHG+I QR R K L  F+EG ++++
Sbjct: 248 -THGGYERAIAFCNTKNMTDRLSGLLQMRGITAQAIHGDIQQRIREKTLQAFREGKMRVL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           VA+D+AARGLDI DV  VFN+DVP+  E YIHRIGRTGRA RHG A++LV
Sbjct: 307 VATDVAARGLDIDDVDVVFNYDVPDEIEYYIHRIGRTGRAKRHGVAYSLV 356


>gi|194878451|ref|XP_001974067.1| GG21281 [Drosophila erecta]
 gi|190657254|gb|EDV54467.1| GG21281 [Drosophila erecta]
          Length = 524

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 218/369 (59%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLGL+  +  A  +  +  P+ IQ + IP+ LQ  DV G+A+TG+GKT +F LP+L
Sbjct: 69  LTWKDLGLNETLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 128

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      L+L PTRELA Q+ + FE  G    +   +++GG+   AQ  +L 
Sbjct: 129 HALLENPQRYF---ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 185

Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGR++DH    K   +  I+ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 186 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 245

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L++P ++EV+    T E ++  ++    +Y  K   L  +L
Sbjct: 246 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKY--KDVYLVHIL 303

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++ +  + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK     ++
Sbjct: 304 -NELSGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 362

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA TLV++ DI+    
Sbjct: 363 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQR 422

Query: 360 IEKLIEKKV 368
           IE L+ K++
Sbjct: 423 IEHLLGKQL 431


>gi|330501428|ref|YP_004378297.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina NK-01]
 gi|328915714|gb|AEB56545.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina NK-01]
          Length = 458

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 210/369 (56%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L LS  +   +   GY + TPIQ  ++PL+L+  D+   A+TG+GKTA+F + +L  
Sbjct: 6   FASLPLSAAMQANLAAIGYAEMTPIQAASLPLILKGRDLIAQAKTGSGKTAAFGIGLLHP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L     R    + L+L PTRELA QVA    +  +   N+ V  L GG+PF  Q   LE 
Sbjct: 66  LNP---RYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR+ +H  +G L ++ +  LV+DEADRMLDMGF+  I  I    P  RQTL
Sbjct: 123 GAHVIVGTPGRVQEHLRKGTLKVDGLNTLVLDEADRMLDMGFVDSISEIIEQTPARRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++  FL+ P+R+EV       +  +  +     Q  +  ++L +  + 
Sbjct: 183 LFSATYPAGIEQLAARFLRTPERVEVEAMHDDDQIEQRFYEIAPGQRMQAVSILLRHFRK 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q      + FC  ++    L   LE +  S  A+HG+++QR R +IL+ F   ++ ++VA
Sbjct: 243 QPV----VAFCATRQQCDELAAQLEAEKISAAALHGDLEQRERDQILALFANRSLSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   AE +IHRIGR+GRAG  G A +LVA  +     AIE
Sbjct: 299 TDVAARGLDIAGLEMVINVELSRDAEVHIHRIGRSGRAGDKGLALSLVAPPEASRAQAIE 358

Query: 362 KLIEKKVDW 370
            L  K + W
Sbjct: 359 TLQGKTLAW 367


>gi|330470231|ref|YP_004407974.1| dead/deah box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
 gi|328813202|gb|AEB47374.1| dead/deah box helicase domain protein [Verrucosispora maris
           AB-18-032]
          Length = 563

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 134/364 (36%), Positives = 209/364 (57%), Gaps = 3/364 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA+LG   + V A+  AG  +   IQ   +P+ L+  D+ G A TGTGKT  F +P+L  
Sbjct: 27  FAELGARAETVEALAAAGITRAFAIQEYALPIALRGADLIGQAPTGTGKTLGFGVPLLER 86

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   G      +P+ L++ PTREL  QVA +    G+   + V  + GG+ +E Q + L 
Sbjct: 87  VFAPGEGSGDGLPQALVVVPTRELGIQVAKDIAAAGRTRGVRVLPIYGGVAYEPQVEALR 146

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G ++L+ TPGR+LD   +  L +N I  LV+DEADRMLD+GF+  ++ I +++P  RQT
Sbjct: 147 KGVEILVGTPGRLLDLAKQKHLRLNGIRALVLDEADRMLDLGFLDDVERILAMLPEDRQT 206

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM D +  +S  FL++P  I     + T  + +   +        K  ++ ++LQ
Sbjct: 207 MLFSATMPDPIVTLSRRFLRHPITIHAGHTAETGPSPQTEQLVYRTHSMNKVEIVARILQ 266

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      +IF   K+    +   L+ +GF+V A+HG++ Q +R + L  F+ G I  +V
Sbjct: 267 AESRGLT-MIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDTLV 325

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV N+D P   + Y HRIGRTGRAG  G A T V  +D+     I
Sbjct: 326 ATDVAARGIDVTGVTHVINYDCPEDQDTYTHRIGRTGRAGASGVAVTFVDWDDMPRWRII 385

Query: 361 EKLI 364
           +K +
Sbjct: 386 DKTL 389


>gi|296200672|ref|XP_002747679.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Callithrix
           jacchus]
          Length = 764

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 139/363 (38%), Positives = 209/363 (57%), Gaps = 1/363 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 186 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 245

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     R  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 246 ERLIYKPRRGPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEVALR 305

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 306 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 365

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 366 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 425

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 426 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQMQRLEALRRFKDEQIDIL 485

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 486 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 545

Query: 360 IEK 362
           I K
Sbjct: 546 IVK 548


>gi|262165629|ref|ZP_06033366.1| ATP-dependent RNA helicase [Vibrio mimicus VM223]
 gi|262025345|gb|EEY44013.1| ATP-dependent RNA helicase [Vibrio mimicus VM223]
          Length = 363

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 136/338 (40%), Positives = 201/338 (59%), Gaps = 8/338 (2%)

Query: 36  LQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA-RVRMPRTLILEPTRELAAQVADNFEK 94
           +Q  D+   AQTGTGKTASFVLP+L  L +G+  R +  R LIL PTRELA QVA+  E+
Sbjct: 1   MQGRDLIAAAQTGTGKTASFVLPILEKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQ 60

Query: 95  YGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDE 154
           YG++  L    + GG+  +AQ ++L  G DVL+ TPGR++D + +  +    IE++V+DE
Sbjct: 61  YGQDTGLKSLAVFGGVDEQAQKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDE 120

Query: 155 ADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA 214
           ADRMLDMGFI  I  I   +P   Q LLFSAT++ +++++++  + +P  I +    ++ 
Sbjct: 121 ADRMLDMGFIESINKIIDCLPSEVQFLLFSATLSRKVRELAKTAVNDPYEISIAANQASK 180

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
             I    +        K ALL  L+  Q      +IF   K     L   LEK+G    A
Sbjct: 181 SNISQWLITV--DKDTKSALLSHLINEQQ-WDQALIFIETKHGAAKLVTQLEKRGIQAEA 237

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
            H    Q  R ++L +FK G I+ +VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIG
Sbjct: 238 FHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIG 297

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEK----LIEKKV 368
           RTGRA   G+A + V+K++ K++  IE     LIE++V
Sbjct: 298 RTGRADAVGEAISFVSKDNFKNLCMIESRLGHLIERRV 335


>gi|213023601|ref|ZP_03338048.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 359

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 138/353 (39%), Positives = 206/353 (58%), Gaps = 4/353 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  
Sbjct: 6   FSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT+
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTM 185

Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  D ++  +E  L++P  +  N PS+      H +      +  K ALL+ LL+
Sbjct: 186 LFSATLEGDAIKDFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADNFEHKVALLKHLLK 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     I+F  +++ V  L  +L   G + C + G + Q  R + +    +G + ++V
Sbjct: 245 -QDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           A+D+AARG+DIPDV HV NFD+P   + Y+HRIGRTGRAGR G A +LV   D
Sbjct: 304 ATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHD 356


>gi|148379740|ref|YP_001254281.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A str. ATCC
           3502]
 gi|153931372|ref|YP_001384037.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A str. ATCC
           19397]
 gi|153936334|ref|YP_001387579.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A str. Hall]
 gi|148289224|emb|CAL83319.1| ATP-dependent RNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152927416|gb|ABS32916.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum A str. ATCC
           19397]
 gi|152932248|gb|ABS37747.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum A str. Hall]
          Length = 481

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 128/368 (34%), Positives = 220/368 (59%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  LS +++ ++   GY  P+ +Q + IPL+L+  D+   ++TG+GKTA+F +P  
Sbjct: 4   LTFENYKLSDEILKSLGKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIP-- 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I EK     + P+ L+L PTRELA Q+ +          L    + G  P   Q ++L+
Sbjct: 62  -ICEKLELEEKDPQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRELK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR LDH  R  L +  I+  V+DEAD ML+MGFI  ++ +   +P  R T
Sbjct: 121 QRVHLVVGTPGRTLDHIERENLNLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRVT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ ++++ + + ++ NP+ I +N  + T  TI  C+     +   K  LLQ+++ 
Sbjct: 181 MLFSATIPEKVENLCKKYMNNPENININPENITTGTINQCYYE--VEDKDKFYLLQKII- 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++ + N IIFCN ++ V  +   ++K+G +   +HG ++Q+ R++ +  FKEG  Q +V
Sbjct: 238 YKEVVDNSIIFCNTREKVDEVLKHMKKKGLNAIGLHGGMEQKDRLETMKKFKEGEFQFLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ I ++ HV N+++P   E+Y+HRIGRTGRAG+ G A T +    ++ +  I
Sbjct: 298 CTDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFLKDI 357

Query: 361 EKLIEKKV 368
           E  IEK++
Sbjct: 358 EDYIEKEI 365


>gi|282860072|ref|ZP_06269153.1| ATP-dependent RNA helicase DeaD family protein [Prevotella bivia
           JCVIHMP010]
 gi|282587160|gb|EFB92384.1| ATP-dependent RNA helicase DeaD family protein [Prevotella bivia
           JCVIHMP010]
          Length = 589

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 159/473 (33%), Positives = 253/473 (53%), Gaps = 23/473 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  + + TP+Q + IP +L+  D+  +AQTGTGKTA+++LP+L
Sbjct: 1   MYFDELDLNDNVLDALYDMHFDECTPVQEQCIPHILKGKDILAVAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIG--GIPFEAQN 116
           + L  G         LI+ PTRELA Q+    + +    N    VA+  G  G  ++ + 
Sbjct: 61  SKLADGGYPEDAINCLIMSPTRELAQQIDQGMQGFSYYLNGVSCVAVYGGNDGNRYDQEI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  GADV+I TPGR + H + G + ++ +   V+DEADRMLDMGF   I+ I   +P 
Sbjct: 121 KSLALGADVIIATPGRFISHISLGNVDLSKVSFFVLDEADRMLDMGFSEDIKTIAKKLPS 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T QT++FSATM  +++ +++  L+ P+ +++   S  AE I+      Y   ++K  +++
Sbjct: 181 TCQTIMFSATMPSKIEDLAKTLLKEPEMVKLAV-SKPAEKIQQSAYVCYE--TQKIEIIK 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            + ++ D +   IIF   K+ V  +  SL ++  +   +H ++DQ  R  ++  FK G I
Sbjct: 238 DIFKAGD-LHRVIIFSGSKQKVKQIASSLNRKHINCGEMHSDLDQAQRDDVMFKFKSGQI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ ARG+DI D+  V N+DVP+  E+Y+HRIGRT RA R G A T V  +DI +
Sbjct: 297 DVLVATDIVARGIDIDDITMVINYDVPHDVEDYVHRIGRTARADRDGVAITFVNGDDIYY 356

Query: 357 IDAIEKLIEKKVD--WLNGDL-------SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
              IE  +EK ++   L   L       S+  P   K    +  H R       K + + 
Sbjct: 357 FQQIESFLEKTIEKNRLPEALGEGPEYKSNGRPSKNKKAKNRRRHDRDQQSHKDKKSNY- 415

Query: 408 RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
           RR KN   Q +    KE  K         E  ++ +  +GN+P       +GK
Sbjct: 416 RRVKNRQEQPAPTDEKEQHKPQ-----TSEKKSEKVQDKGNIPEVGATAEQGK 463


>gi|229495897|ref|ZP_04389623.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           endodontalis ATCC 35406]
 gi|229317210|gb|EEN83117.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           endodontalis ATCC 35406]
          Length = 587

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 135/371 (36%), Positives = 218/371 (58%), Gaps = 8/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           M F +L LS  ++ AV   G+ +  P+Q   IP +L+ + D+  +AQTGTGKTA++ LP+
Sbjct: 1   MTFDELKLSAPLLDAVSALGFTEAMPVQAAVIPYLLEDNIDLIALAQTGTGKTAAYGLPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
           L   EK R +   P+ L+L PTREL  Q+A + E + K    + V  + GG   E Q + 
Sbjct: 61  L---EKLRPQRDFPQALVLSPTRELCLQIASDLESFAKFLPEVHVLAVYGGSSIETQIRS 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RG D+++ TPGR+LD   R  + +  I  +V+DEAD ML+MGF   ++ I S +P  R
Sbjct: 118 LKRGVDIVVATPGRLLDLMRRRAISLERIHTVVLDEADEMLNMGFSEDLKAILSEIPEER 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             LLFSATM+ E+  ++ ++L +PK I +   +     I H +    A+  ++   L+++
Sbjct: 178 NLLLFSATMSREIATIAHSYLHDPKEITIGRKNEANSNIRHIYYLVPAR--QRYLALKRI 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +    ++  GI+FC  +     +   L   G++  A+HG++ Q  R +++  F  G +QL
Sbjct: 236 VDFFPSI-YGIVFCRTRVETKEIAEHLIADGYNADALHGDLSQEQRDRVMQRFCSGHLQL 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ ++ HV ++ +P+  ENY HR GRT RAG+ G +  L    +   I 
Sbjct: 295 LVATDVAARGLDVDNLTHVIHYGLPDDVENYTHRSGRTARAGKTGLSIALCHLREKSRIR 354

Query: 359 AIEKLIEKKVD 369
           +IEKLI  K++
Sbjct: 355 SIEKLIGAKME 365


>gi|114682563|ref|XP_001166284.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 isoform 2 [Pan
           troglodytes]
          Length = 745

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 1/363 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 167 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 226

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 227 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 286

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 287 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 346

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 347 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 406

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 407 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 466

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 467 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 526

Query: 360 IEK 362
           I K
Sbjct: 527 IVK 529


>gi|300727507|ref|ZP_07060898.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           bryantii B14]
 gi|299775210|gb|EFI71811.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           bryantii B14]
          Length = 622

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 138/385 (35%), Positives = 228/385 (59%), Gaps = 14/385 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61
           F +LG+S  +  A+ + G+  P P+Q + IP +L R  DV  +AQTGTGKTA++ LP   
Sbjct: 4   FEELGVSKDICRAISELGFEHPMPVQEEVIPYLLSRESDVIALAQTGTGKTAAYGLP--- 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
           +L+      ++ +T+IL PTREL  Q+AD+  ++ K  + + +  + GG    +Q + L+
Sbjct: 61  VLQNTDPSTKITQTVILSPTRELCLQIADDLNEFAKYIDGMHIVAVYGGTDIGSQIRTLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGR++D  NRG   + N++ +V+DEAD ML+MGF   I  I   +     T
Sbjct: 121 HGVQIIVATPGRLVDLMNRGVAKLENVQNIVLDEADEMLNMGFSESINTIFEGLSKDHIT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E++++++N+L N K I V + +  AE + H +    A+   K   L++++ 
Sbjct: 181 LLFSATMSKEVERIAKNYLHNHKEIVVGSRNEGAEHVNHIYYMVSAK--DKYLALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GIIFC  K     +   L K G++  A+HG++ Q+ R   +  F+    Q +V
Sbjct: 239 FHPRI-FGIIFCRTKVETQEVADKLIKDGYNAEALHGDLSQQQRDLTMQKFRNHLTQFLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++ HV N+ +P+  E+Y HR GRTGRAGR G + +++  ++   +  I
Sbjct: 298 ATDVAARGLDVDELTHVINYGLPDDIESYTHRSGRTGRAGRKGTSISIIHVKEKWKVRQI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKI 385
           EK I K  +++ G+L    P  E+I
Sbjct: 358 EKQIGK--EFIAGEL----PKAEEI 376


>gi|297707298|ref|XP_002830447.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Pongo
           abelii]
          Length = 765

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 1/363 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 187 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 246

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 247 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 306

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 307 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 366

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 367 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 426

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 427 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 486

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 487 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 546

Query: 360 IEK 362
           I K
Sbjct: 547 IVK 549


>gi|300779595|ref|ZP_07089451.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
           33030]
 gi|300533705|gb|EFK54764.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
           33030]
          Length = 440

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 131/351 (37%), Positives = 208/351 (59%), Gaps = 4/351 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG++ ++V A+ ++G  +   IQ  T+PL L   D+ G A+TG GKT +F +P+L  
Sbjct: 8   FAELGVAAEIVEALGESGIERVFSIQELTLPLALAGRDLIGQARTGMGKTFAFGVPLLDR 67

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +    A   +   PR L++ PTRELA QV+++         + +  + GG P++ Q   L
Sbjct: 68  VFDDAAIEELDGTPRALVITPTRELAVQVSEDLTLAASKTPVRLTTIYGGRPYDEQLNAL 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G DV++ TPGR+LD   RG L+++ + ILV+DEAD MLD+GF+P IQ +   +    Q
Sbjct: 128 EAGVDVVVGTPGRLLDLHERGDLVLDRVAILVLDEADEMLDLGFLPDIQRLWGALSQPLQ 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + K++   +  P  I   +  S+        V   +    K  ++ ++L
Sbjct: 188 TMLFSATMPAPILKLAREMMNKPVHIRAESADSSQLHDTTKQVVFVSHKMDKPEVVARVL 247

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q+ D     IIF   K+    +   + ++GF+V ++HG++ Q +R + L  F++G ++++
Sbjct: 248 QA-DGRGRTIIFTRTKRTAAEVAEDVARRGFAVGSVHGDLGQSARERSLEAFRKGDVEIL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           VA+D+AARG+D+ DV HV N+  P+    Y+HRIGRTGRAGR G A TLV 
Sbjct: 307 VATDVAARGIDVDDVTHVINYQTPDDPMTYVHRIGRTGRAGRTGTAVTLVG 357


>gi|198435916|ref|XP_002130991.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Ciona intestinalis]
          Length = 1150

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 147/425 (34%), Positives = 236/425 (55%), Gaps = 11/425 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +   G+S K++ A+  A Y KPT IQ + IP ++  HD+ GIA+TG+GKT +F+LPML  
Sbjct: 492 WVQAGVSYKMLNALKKANYEKPTVIQAQAIPAIMSGHDLIGIAKTGSGKTVAFLLPMLRQ 551

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R       P  +I+ PTRELA Q+    +K+ K+  L V  + GG     Q  +L+
Sbjct: 552 IMDQRPLEDTEGPIAVIMTPTRELALQITKECKKFTKSLKLHVVCVYGGTGISEQIAELK 611

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +     LV+DEADRM DMGF P + ++ +     
Sbjct: 612 RGAEIIVCTPGRMIDMLTVNNGRVTNLRRCTYLVLDEADRMFDMGFEPQVMHVINSCRPD 671

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQT+LFSAT   +++ ++   L  P  ++V   S     + +   + T  Q  K   LL+
Sbjct: 672 RQTVLFSATFPRQMEALARRILNKPVEVQVGGRSVVCSDVKQQVLILTEEQ--KFLKLLE 729

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L Q Q+  K  + +F ++++    L   L  + +S  A+HG IDQ  R  I+S+FK G 
Sbjct: 730 LLGQYQE--KGAVLVFVDKQERADYLLKELMDKSYSCMALHGGIDQYDRDSIISDFKRGV 787

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            QL++A+ +AARGLD+ ++  V NF+ PN  E+Y+HR GRTGRAG  G A+T + ++  +
Sbjct: 788 NQLLIATSVAARGLDVKNLILVVNFNCPNHYEDYVHRCGRTGRAGNKGFAYTFITQDQAR 847

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           +   I K +E  +  +  DL  L    ++   AQ    + N+    +   FD  +   + 
Sbjct: 848 YAGEIIKALELSLTKVPPDLEMLWNQFKEEQKAQGKSVKSNSGFTGRGFKFDETEYVIAK 907

Query: 416 QKSHI 420
           ++  I
Sbjct: 908 ERKQI 912


>gi|269959614|ref|ZP_06173995.1| Superfamily II DNA and RNA helicase [Vibrio harveyi 1DA3]
 gi|269835672|gb|EEZ89750.1| Superfamily II DNA and RNA helicase [Vibrio harveyi 1DA3]
          Length = 407

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 212/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L L   ++ A+ + GY +PT IQ + IP  L   D+   A TGTGKTA+FVLP L  
Sbjct: 5   FAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQY 64

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+    R   P R LIL PTRELA QVAD      KN  L +  + GG+ ++     L  
Sbjct: 65  LQDFPRRKPGPARILILTPTRELAMQVADQARALAKNTKLNIFTITGGVQYQEHADILAT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+ ++ +  +     IE L++DEADRMLDMGF P +  +++   + +QTL
Sbjct: 125 TQDIVVATPGRLREYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTL 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLL 239
           LFSAT+  + ++  + + L  P  I+  +P    + I   +  A  A++  K ALL+ ++
Sbjct: 185 LFSATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADDAEH--KLALLKHII 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  I+F   ++ +  L   LE        I G + Q  R   ++ F+EGT+ ++
Sbjct: 243 TEQ--AERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFREGTVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A ++V   D   +D 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR 360

Query: 360 IEKLIEKKV 368
           + + +++ +
Sbjct: 361 VARYVKEDI 369


>gi|326932134|ref|XP_003212175.1| PREDICTED: hypothetical protein LOC100549747 [Meleagris gallopavo]
          Length = 1561

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 141/365 (38%), Positives = 215/365 (58%), Gaps = 5/365 (1%)

Query: 1    MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F+LP+L
Sbjct: 983  LSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVL 1042

Query: 61   TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              L     +  + R L+L PTREL  QV    ++  +  ++T  L +GG+  + Q   L 
Sbjct: 1043 ERLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTSCLAVGGLDVKTQEAALR 1102

Query: 121  RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+LI TPGR++DH  N     ++++E+L++DEADRMLD  F   ++ I  L    RQ
Sbjct: 1103 SGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSKHRQ 1162

Query: 180  TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQL 238
            T+LFSATMT+E++ ++   L+NP RI VN+ +  A  +   F+     +   + A++  L
Sbjct: 1163 TMLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSAL 1222

Query: 239  LQSQDTMKNGIIFCNQKKNVVNLCHSLEK-QGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    T  + ++   Q K   +  H L    G  V  +HGN+ Q  R++ L  FK+  I 
Sbjct: 1223 LTR--TFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQID 1280

Query: 298  LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K +
Sbjct: 1281 ILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKML 1340

Query: 358  DAIEK 362
              I K
Sbjct: 1341 KEIVK 1345


>gi|302553973|ref|ZP_07306315.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471591|gb|EFL34684.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces
           viridochromogenes DSM 40736]
          Length = 475

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 131/346 (37%), Positives = 205/346 (59%), Gaps = 12/346 (3%)

Query: 31  TIPLVLQRHDVCGIAQTGTGKTASFVLPML---TI---LEKGRAR----VRMPRTLILEP 80
           T+P+ L   DV G A+TGTGKT  F LP+L   T+   +E GRA        P+ L++ P
Sbjct: 2   TLPVALSGKDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRAEPEALTEAPQALVVVP 61

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TREL  QV ++    GK  N+ V  + GG  +E Q + L++G DV++ TPGR+LD   + 
Sbjct: 62  TRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGVDVVVGTPGRLLDLAGQK 121

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200
           KL + +++ LV+DEAD MLD+GF+P ++ I +++P  RQT+LFSATM   +  ++  ++ 
Sbjct: 122 KLNLKHVKSLVLDEADEMLDLGFLPDVEKIINMLPVRRQTMLFSATMPGAVIGLARRYMS 181

Query: 201 NPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
            P  I   +P     T+ +     Y A    K  ++ ++LQ++      ++FC  K+   
Sbjct: 182 QPTHISATSPDDAGATVANTKQYIYRAHNMDKPEMVARILQAEG-RGLAMVFCRTKRTAA 240

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
           +L   L+++GF+  A+HG++ Q +R + L  F+ G + ++V +D+AARG+D+  V HV N
Sbjct: 241 DLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVIN 300

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +  P   + Y+HRIGRTGRAG  G A TLV  +DI     I K +E
Sbjct: 301 YQSPEEEKTYLHRIGRTGRAGAKGTAITLVDWDDIPRWQLINKALE 346


>gi|224089124|ref|XP_002308641.1| predicted protein [Populus trichocarpa]
 gi|222854617|gb|EEE92164.1| predicted protein [Populus trichocarpa]
          Length = 440

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 139/367 (37%), Positives = 214/367 (58%), Gaps = 11/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FADLG+  ++V A    G+  PT IQ++ IP  L+  D+  +AQTG+GKTA+F LP L  
Sbjct: 12  FADLGICEQLVEACERLGWKNPTKIQVEAIPHALEGKDLIALAQTGSGKTAAFALPTLQA 71

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+     V +    +L PTRELA Q+A+ FE  G +  L  A+L+GG+    Q   L +
Sbjct: 72  LLQASVTSVPVFYACVLSPTRELAIQIAEQFEALGSDIGLRCAVLVGGVDMGLQTIALAK 131

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+LDH +  K   +  ++ L++DEADR+L+  F   +  I +++   R+T
Sbjct: 132 RPHIVVGTPGRLLDHLSNTKGFSLRTLKYLILDEADRLLNEEFEKSLDEILTVISRDRKT 191

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT +++K+    L+NP +IEV +  S  ET+    +   A+Y K+C L+  L  
Sbjct: 192 YLFSATMTKKVRKLQRACLRNPVKIEVASKYSVVETLRQQLLFCPAKY-KECYLVHAL-- 248

Query: 241 SQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              T+K+G   ++F         L   L   G     I+G++ Q  R+  L+ FK G   
Sbjct: 249 ---TLKSGASTMVFTRTCDATHFLALVLRNLGLRAIPINGHMSQSKRLGALNKFKAGECN 305

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ +D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR G A +LV + +I   
Sbjct: 306 ILICTDVASRGLDIPSVDMVVNYDIPTNSKDYIHRVGRTARAGRSGLAISLVNQNEIGWF 365

Query: 358 DAIEKLI 364
             IE LI
Sbjct: 366 KQIENLI 372


>gi|194759163|ref|XP_001961819.1| GF14739 [Drosophila ananassae]
 gi|190615516|gb|EDV31040.1| GF14739 [Drosophila ananassae]
          Length = 525

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 219/369 (59%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLGL+  +  A  +  +  P+ IQ + IP+ LQ  DV G+A+TG+GKT +F LP+L
Sbjct: 71  LTWKDLGLNDTLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 130

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      L+L PTRELA Q+ + FE  G +  +   +++GG+   AQ  +L 
Sbjct: 131 HALLENPQRFF---ALVLTPTRELAFQIGEQFEALGSSIGIKCCVVVGGMDMVAQGLQLA 187

Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGR++DH    K   + +I+ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 188 KKPHIIIATPGRLVDHLENMKGFNLKSIKYLVMDEADRILNMDFEVELDKILKVLPRERR 247

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L++P ++EV+    T E ++  ++    +Y  K   L  +L
Sbjct: 248 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQYYLFIPVKY--KDVYLVHIL 305

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK     ++
Sbjct: 306 -NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKDRSIL 364

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA TLV++ DI+    
Sbjct: 365 ISTDVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQR 424

Query: 360 IEKLIEKKV 368
           IE L+ K++
Sbjct: 425 IEHLLGKQL 433


>gi|189342956|gb|ACD91989.1| DEAD box polypeptide 27 [Homo sapiens]
 gi|313883628|gb|ADR83300.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [synthetic construct]
          Length = 765

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 1/363 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 187 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 246

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 247 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 306

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 307 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 366

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 367 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 426

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 427 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 486

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 487 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 546

Query: 360 IEK 362
           I K
Sbjct: 547 IVK 549


>gi|219114457|ref|XP_002176399.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402645|gb|EEC42635.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 575

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 142/389 (36%), Positives = 227/389 (58%), Gaps = 10/389 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F D     ++  A   AG+ +PT IQ +  P+ LQ  D+  +A+TG+GKT  F+LP+ 
Sbjct: 138 MEFKDAPFQERIQQAFAQAGFARPTSIQGQAWPIALQNKDMICVAKTGSGKTCGFLLPVF 197

Query: 61  TILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 + R++    P  L+L PTREL+ Q+ +  +K+G+   +      GG     Q  
Sbjct: 198 HQHLVKQTRIQGFTKPILLVLAPTRELSVQILEEAQKFGRPLGIRSVCCYGGASKHPQIA 257

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT-SLVPF 176
            L+RG + +I TPGR+ D     K  ++ ++ LV+DEADRMLDMGF P I++I  ++ P 
Sbjct: 258 ALQRGVECVIATPGRLNDLIEMRKADLSKVQYLVLDEADRMLDMGFEPQIRSIILNIPPE 317

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   E+Q ++ +FL+NP +I V   ++     +          S+K   L+
Sbjct: 318 NRQTLLFSATWPKEIQALAHDFLKNPIQINVGEVNALVANKDIQQTIVMCSESEKLDKLE 377

Query: 237 QLLQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q+L  +D M   II F  +K +  +L + L + GF+V ++HG+  Q  R +++  FK G 
Sbjct: 378 QIL--RDLMHGKIIVFVAKKISCNDLANRLWEDGFAVDSLHGDRPQWERTRVMQAFKGGQ 435

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVP---NRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +++++A+D+AARGLD+ DVG V N+D+P   N  E+Y+HRIGRTGRAG  GKA+T   + 
Sbjct: 436 LRVLIATDVAARGLDVKDVGVVVNYDMPSGVNGVEDYVHRIGRTGRAGNKGKAYTFFTQG 495

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           D K+   + +++ K    +  +L ++  P
Sbjct: 496 DRKNATQLVQVLTKAQQEIPPELQAMARP 524


>gi|82779039|ref|YP_405388.1| ATP-dependent RNA helicase RhlB [Shigella dysenteriae Sd197]
 gi|309784492|ref|ZP_07679130.1| ATP-dependent RNA helicase rhlB [Shigella dysenteriae 1617]
 gi|123561185|sp|Q329V8|RHLB_SHIDS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|81243187|gb|ABB63897.1| putative ATP-dependent RNA helicase [Shigella dysenteriae Sd197]
 gi|308927598|gb|EFP73067.1| ATP-dependent RNA helicase rhlB [Shigella dysenteriae 1617]
          Length = 421

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 146/373 (39%), Positives = 212/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+  M   
Sbjct: 11  FSDFSLHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSMFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRKVNKPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + IEV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|326334210|ref|ZP_08200433.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
 gi|325948001|gb|EGD40118.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
          Length = 482

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 138/398 (34%), Positives = 228/398 (57%), Gaps = 10/398 (2%)

Query: 13  VCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML--TILEKGRAR 69
           +CA L+  G   P  IQ  T+ + LQ  D+ G A+TG+GKT +F +P++  ++  K R  
Sbjct: 5   ICAPLERKGITTPFAIQEMTLSVALQGTDLIGQARTGSGKTLAFGIPVVQRSVSPKDRDY 64

Query: 70  VRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
           + +    P+ LI+ PTRELA QV+       ++  L V  + GG  +E Q + LE+G D+
Sbjct: 65  IDLPQGKPQALIVAPTRELAMQVSAEISMISEDRGLRVLTVYGGAGYEPQIEALEKGVDI 124

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           ++ TPGR++D  NR  L ++++  LV+DEAD MLD+GF+P ++ + +L P TRQTLLFSA
Sbjct: 125 VVGTPGRLIDLANRKVLDLSHVHALVLDEADEMLDLGFLPDVEKLVTLTPETRQTLLFSA 184

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCALLQQLLQSQDT 244
           TM   +  ++ +++++P  I   + ++  ET+       Y  +   K  ++ +LLQ +D 
Sbjct: 185 TMPGAIVALARSYMRHPMNIRAES-AAERETVPATAQFVYQAHDLDKPEMIGRLLQCEDH 243

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            K  ++F   K+    +   L ++GF    +HG++ Q +R +++  F++G ++++VA+D+
Sbjct: 244 DKV-VVFARTKRQAQRVADDLAERGFPASPLHGDMQQAARERVMQKFRDGKVEVLVATDV 302

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           AARG+D+  V HV N+  P+  + Y+HRIGRTGRAG  G A TLV   D+     I K +
Sbjct: 303 AARGIDVTGVSHVVNYTTPDDEKTYVHRIGRTGRAGASGVAVTLVDWADLHKWKMINKAL 362

Query: 365 EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           +   D      SS    L  + I +    R     P+K
Sbjct: 363 DLPFDDPQETYSSSEHFLHDMGIPKGTKGRIKKATPEK 400


>gi|238501386|ref|XP_002381927.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
 gi|220692164|gb|EED48511.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
          Length = 472

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 142/394 (36%), Positives = 222/394 (56%), Gaps = 14/394 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL  ++  A    GY  PT IQ + IPL LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 54  FKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQA 113

Query: 63  LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L      +  P +   L+L PTRELA Q++  FE  G   ++   +L+GG+   +Q+  L
Sbjct: 114 L------MDKPSSFFGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIAL 167

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +++ TPGR+LDH    K   + N++ LV+DEADR+LDM F P +  I  ++P  R
Sbjct: 168 GKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKVLPRER 227

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQ 237
           +T LFSATM+ +++ +    LQNP R+ V++    T  T++  ++  +  +  K   L  
Sbjct: 228 RTYLFSATMSSKVESLQRASLQNPLRVAVSSSKFQTVSTLQQSYI--FIPHKHKDLYLVY 285

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL ++   ++ IIFC        L   L   GF    +HG + Q +R+  L  F+  +  
Sbjct: 286 LL-NEFVGQSCIIFCRTVHETQRLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRD 344

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIP V  V NFD+P  ++ +IHRIGRT RAG+ G A +   + D++  
Sbjct: 345 ILVATDVAARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAISFATQYDVEAW 404

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
             IE  + KK+     +   +    E++  AQ +
Sbjct: 405 LRIEGALGKKLPEYPAEKDEVMVLAERVSEAQRS 438


>gi|221043088|dbj|BAH13221.1| unnamed protein product [Homo sapiens]
          Length = 765

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 1/363 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 187 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 246

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 247 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 306

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 307 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 366

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 367 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 426

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 427 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 486

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 487 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 546

Query: 360 IEK 362
           I K
Sbjct: 547 IVK 549


>gi|257055065|ref|YP_003132897.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
 gi|256584937|gb|ACU96070.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
          Length = 449

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 136/366 (37%), Positives = 207/366 (56%), Gaps = 8/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   +  A+  AG   P PIQ  T+P  L   DV G AQTG+GKT +F L +L
Sbjct: 20  ITFADLNLPKALHRALRKAGLHTPFPIQAATLPDALAGRDVLGRAQTGSGKTLAFGLALL 79

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + L+ G+AR R PR L+L PTRELA QVAD      K   L    ++GG+  + Q + L 
Sbjct: 80  SRLDGGKARPRRPRALVLVPTRELAMQVADALVPLAKAMGLWCRTVVGGMSLQRQAEALL 139

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D++I TPGR+ DH  +G   ++ IE++ IDEAD+M DMGF+P ++ I    P   Q 
Sbjct: 140 RGVDLVIATPGRLSDHVRQGTCTLDGIELVAIDEADQMADMGFLPQVRQILDRTPPDGQR 199

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ D +  +   +L +P    V   +++ +T+EH       ++  K A++ ++  
Sbjct: 200 LLFSATLDDAVADLVSRYLTDPVTHSVAPVTASVDTMEHHLF--QVEHKDKQAVVTEIAA 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      I+F   K +V  L   L   G    A+HG   Q  R ++L++F+ G + ++V
Sbjct: 258 RQG---RTILFVRTKHHVDRLTTRLRAAGVPAAALHGGKTQGQRNRVLADFRSGRMPVLV 314

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ +  +G V + D     ++Y+HR GRT RAG  G   TLV +E  +    +
Sbjct: 315 ATDVAARGIHVDGIGLVLHVDPAADHKDYLHRAGRTARAGASGTVVTLVTREQRR---TV 371

Query: 361 EKLIEK 366
            +++E+
Sbjct: 372 RRMLER 377


>gi|114682561|ref|XP_001166253.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 isoform 1 [Pan
           troglodytes]
          Length = 737

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 1/363 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 159 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 218

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 219 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 278

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 279 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 338

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 339 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 398

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 399 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 458

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 459 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 518

Query: 360 IEK 362
           I K
Sbjct: 519 IVK 521


>gi|268323389|emb|CBH36977.1| probable ATP-dependent RNA helicase [uncultured archaeon]
          Length = 392

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 139/355 (39%), Positives = 209/355 (58%), Gaps = 17/355 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG+   ++ ++ + G+ +PT IQ K+I L+L   DV   A TG+GKT +F   ++  
Sbjct: 4   FKELGIIEPILKSIEEEGFERPTEIQEKSISLILSGKDVIAEAATGSGKTLAFAADIIEK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            EKG       RTL+L PTRELA QVA     + K   L +  + GG+    Q  +L R 
Sbjct: 64  TEKGTG----IRTLVLTPTRELAQQVAAALSLFSKYKPLRIVAVFGGVSINPQITQLRR- 118

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADV++ TPGRILDH  R  L ++ + ILV+DEADRMLDMGFIP ++ I    P  RQTLL
Sbjct: 119 ADVVVGTPGRILDHIGRRTLNLSKVNILVLDEADRMLDMGFIPDVKKIVGECPRNRQTLL 178

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY----SKKCALLQQL 238
           FSAT++ E+  ++  + ++P        S +AE        T   Y    + K +LL  L
Sbjct: 179 FSATISREITVLARKYQKDP-------ISVSAEAYVDPSKLTQLYYDVPDNLKFSLLVHL 231

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ +++ +  ++FCN + N   +  +L+  G    AIHG + Q  R +++  F    +++
Sbjct: 232 LKHEES-ELVMVFCNTRTNTDFVASNLKALGIGAMAIHGGLTQDKRDRVMKQFHSHDVRV 290

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +V +D+AARGLDIP V H++N+D+P   ++YIHRIGRT RAG+ G A  ++A  D
Sbjct: 291 LVCTDVAARGLDIPHVSHIYNYDIPMYGKDYIHRIGRTARAGKDGVAINILASRD 345


>gi|253689449|ref|YP_003018639.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756027|gb|ACT14103.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 441

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 136/354 (38%), Positives = 204/354 (57%), Gaps = 4/354 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L L   ++ A+ D GY +PT IQ + IP  ++  DV G A TGTGKTA+++LP+L 
Sbjct: 5   NFSELDLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQ 64

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++  R +   PR LIL PTRELA QVAD    +  + +L VA + GG+ +    +   
Sbjct: 65  HLIDFPRKKSGPPRILILTPTRELAMQVADQARAFAAHTHLDVATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT
Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184

Query: 181 LLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+  D ++  +E  L +P  IE +      + I   +         K ALL   L
Sbjct: 185 LLFSATLEGDAIKDFAERLLNDPVEIESDPSRRERKKILQWYYRA-DDVKHKTALLCHQL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  ++ IIF  +++ V  L   L + G + C + G + Q  R + +    +G + ++
Sbjct: 244 KQPDVTRS-IIFVRKRERVHELVAWLREAGINSCYLEGEMVQAKRNEAIKRLSDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+AARG+DI DV HVFNFD+P  ++ Y+HRIGRTGRAGR G A + V   D
Sbjct: 303 VATDIAARGIDINDVSHVFNFDLPRTSDTYLHRIGRTGRAGRKGCAISFVEAHD 356


>gi|167752241|ref|ZP_02424368.1| hypothetical protein ALIPUT_00483 [Alistipes putredinis DSM 17216]
 gi|167660482|gb|EDS04612.1| hypothetical protein ALIPUT_00483 [Alistipes putredinis DSM 17216]
          Length = 650

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 218/368 (59%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIP-LVLQRHDVCGIAQTGTGKTASFVLPML 60
           +F  LGLS  ++ A+   G+  P+ IQ  TIP L+    D+   AQTGTGKTA+F LP++
Sbjct: 6   EFKALGLSDDILTAIAKKGFETPSAIQSLTIPHLLTTDKDIIAQAQTGTGKTAAFGLPII 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L    +R  +P+ ++L PTRELA QV      +   ++L++A + GG     Q ++L+
Sbjct: 66  QMLT---SRRNIPQAIVLVPTRELALQVTQELISFN-THDLSIAPIYGGASMTEQLRRLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TPGRILDH  RG L ++ I  LV+DEAD ML+MGFI  I+ I   +   ++ 
Sbjct: 122 KGIDIVVGTPGRILDHIRRGTLDLSAIAYLVLDEADEMLNMGFIEDIEEIMHAMTGPKRV 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D +  ++ N++  P  ++V +   T +     +     +   K   L +++ 
Sbjct: 182 LLFSATMPDRIAALARNYMHEPDLLKVESQHVTTDLTNQIYFEV--REGDKFDALTRIID 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +     GI+F   +    ++   L ++G++   +HG+I Q  R KIL  FK+  + ++V
Sbjct: 240 VEPEF-YGIVFSRTRTGADDIVAKLLERGYAAEVLHGDISQAQREKILGKFKKKQVNILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HV N+ +P  +++Y+HRIGRTGRAG  G A T ++  +++    +
Sbjct: 299 ATDVAARGIDVSNLTHVINYSLPQDSDSYVHRIGRTGRAGNQGTAITFISPSEMRKFGFL 358

Query: 361 EKLIEKKV 368
           ++ I+  +
Sbjct: 359 KRTIKADI 366


>gi|169768960|ref|XP_001818950.1| ATP-dependent rRNA helicase RRP3 [Aspergillus oryzae RIB40]
 gi|91207780|sp|Q2UNB7|RRP3_ASPOR RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|83766808|dbj|BAE56948.1| unnamed protein product [Aspergillus oryzae]
          Length = 472

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 142/394 (36%), Positives = 222/394 (56%), Gaps = 14/394 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL  ++  A    GY  PT IQ + IPL LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 54  FKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQA 113

Query: 63  LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L      +  P +   L+L PTRELA Q++  FE  G   ++   +L+GG+   +Q+  L
Sbjct: 114 L------MDKPSSFFGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIAL 167

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +++ TPGR+LDH    K   + N++ LV+DEADR+LDM F P +  I  ++P  R
Sbjct: 168 GKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKVLPRER 227

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQ 237
           +T LFSATM+ +++ +    LQNP R+ V++    T  T++  ++  +  +  K   L  
Sbjct: 228 RTYLFSATMSSKVESLQRASLQNPLRVAVSSSKFQTVSTLQQSYI--FIPHKHKDLYLVY 285

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL ++   ++ IIFC        L   L   GF    +HG + Q +R+  L  F+  +  
Sbjct: 286 LL-NEFVGQSCIIFCRTVHETQRLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRD 344

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIP V  V NFD+P  ++ +IHRIGRT RAG+ G A +   + D++  
Sbjct: 345 ILVATDVAARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAISFATQYDVEAW 404

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
             IE  + KK+     +   +    E++  AQ +
Sbjct: 405 LRIEGALGKKLPEYPAEKDEVMVLAERVSEAQRS 438


>gi|325280019|ref|YP_004252561.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324311828|gb|ADY32381.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
           20712]
          Length = 594

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 219/371 (59%), Gaps = 10/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LGL  +++  + D G+  P+P+Q K IP++L + +D+  +AQTGTGKTA+F LP+L 
Sbjct: 4   FKELGLEGEILKGIEDLGFEVPSPVQEKVIPVILGEENDLVALAQTGTGKTAAFGLPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120
            L+     +++   LIL PTREL  Q+  + + Y K   ++ VA + GG     Q ++L+
Sbjct: 64  KLDTSLNAIQV---LILSPTRELCMQIGKDLQNYAKYRSDIRVACVYGGADIRKQIRELD 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  VL+ TPGR+ D   R  + +  +  +V+DEAD ML+MGF   +  I    P  R T
Sbjct: 121 RGVHVLVATPGRLCDLIKREAVKIEQVRAVVLDEADEMLNMGFKEDLNFILDETPAERNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC-ALLQQLL 239
            LFSATM  E++++++N+L+NP+ I     +  A+T+ H +   Y   ++ C   L +++
Sbjct: 181 YLFSATMPREVERIAKNYLRNPQEISTGKKNQGADTVTHEY---YQVLARDCYETLHRVI 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                M   IIF   K +   +   L+K G    A+HG++ Q  R  ++  F+   ++++
Sbjct: 238 DCAPDM-YAIIFTRTKMDAREIARKLQKDGIDCDALHGDLSQAQRDDVMDRFRAKRLKVL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ ++ HV N+++P   E+Y HR GRTGRAGR G +  ++  ++   +  
Sbjct: 297 VATDVAARGLDVDNLTHVINYNLPEDVESYTHRSGRTGRAGREGISVAIINSKEKGKLRR 356

Query: 360 IEKLIEKKVDW 370
           IE +++KK  +
Sbjct: 357 IENILKKKFQY 367


>gi|40225538|gb|AAH11927.2| DDX27 protein [Homo sapiens]
 gi|48257213|gb|AAH16060.2| DDX27 protein [Homo sapiens]
          Length = 767

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 1/363 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 189 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 248

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 249 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 308

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 309 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 368

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 369 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 428

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 429 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 488

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 489 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 548

Query: 360 IEK 362
           I K
Sbjct: 549 IVK 551


>gi|307133003|ref|YP_003885019.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
 gi|306530532|gb|ADN00463.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
          Length = 428

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 143/373 (38%), Positives = 216/373 (57%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F+D  L P+V+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPQVIEALENKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT       +   PR LI+ PTRELA Q+  + E   K   L + L  GG  ++ Q K 
Sbjct: 71  LLTHPAPAERQTNQPRALIMAPTRELAVQIHTDAEALAKATGLRLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + M  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LEDGVDILIGTTGRLIDYTKQNHVNMGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G 
Sbjct: 248 QTLIE-EEWPDRCIIFANTKHRCEDIWGHLASDGHRVGLLTGDVAQKKRLRILEDFTQGN 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGCSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I  ++
Sbjct: 367 NLPAIEDYIGHRI 379


>gi|255080620|ref|XP_002503883.1| predicted protein [Micromonas sp. RCC299]
 gi|226519150|gb|ACO65141.1| predicted protein [Micromonas sp. RCC299]
          Length = 754

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 142/399 (35%), Positives = 223/399 (55%), Gaps = 38/399 (9%)

Query: 11  KVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK----- 65
           +V  A+   GY KP+PIQ+ +IP+ L + DV GIA+TG+GKT +FV+PML  +++     
Sbjct: 332 QVKRAIQKVGYAKPSPIQMASIPIGLLKRDVIGIAETGSGKTCAFVVPMLAYIQELPPMT 391

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
                  P  L++ PTRELA Q+ +   K+ +  N  VA ++GG   E Q  KL RG ++
Sbjct: 392 DEVAALGPYALVMAPTRELAQQIEEETVKFAQFMNYRVASVVGGQSIEEQGFKLRRGCEI 451

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI--------------- 170
           +I TPGRI+D   R   ++     +V+DEADRM+DMGF P + ++               
Sbjct: 452 VIGTPGRIIDVLERRYTVLQQCNYIVLDEADRMIDMGFEPQVISVMDSMSAESLKPEEEA 511

Query: 171 ---------TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
                     SL    R T +FSATM   ++K++  +++NP  + + +   T++ I+   
Sbjct: 512 EKIDEQGLEASLGTKYRMTYMFSATMPPSVEKLARKYMRNPAVVTIGSAGKTSDLIKQ-- 569

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK---NVVNLCHSLEKQGFSVCAIHGN 278
           +  +   ++K A L+ +L SQ      IIF N K+   +V NLC    K G+SV AIHG 
Sbjct: 570 IVQWTTSNQKPAQLELVL-SQYPDTQAIIFVNTKRVVDHVSNLCF---KMGYSVGAIHGG 625

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
             Q  R + L  FK+G   ++VA+D+A RG+D+  +  V N+++P   ENY HRIGRTGR
Sbjct: 626 KSQDQREESLRGFKQGEYDILVATDVAGRGIDVKGIDLVVNYEMPLVIENYTHRIGRTGR 685

Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
           AGR G A + +  ED   +  +++L+    + + G+L++
Sbjct: 686 AGRQGTAVSFLTSEDTDVMYELKELLTNSGNHVPGELAN 724


>gi|114682559|ref|XP_001166388.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 isoform 3 [Pan
           troglodytes]
          Length = 791

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 1/363 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 218 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 277

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 278 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 397

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 398 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 457

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 458 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 517

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 518 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 577

Query: 360 IEK 362
           I K
Sbjct: 578 IVK 580


>gi|313231894|emb|CBY09006.1| unnamed protein product [Oikopleura dioica]
          Length = 1234

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 144/368 (39%), Positives = 215/368 (58%), Gaps = 18/368 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD G   K++ A+ + G+  PTPIQ  +IP+ +   D+C  A TG+GKT +FVLP+L  
Sbjct: 105 FADYGFERKLLKALANVGWTTPTPIQKASIPVAVTGRDICACATTGSGKTGAFVLPILQ- 163

Query: 63  LEKGRARVRMP-------RTLILEPTRELAAQVADNFEK-YGKNYNLTVALLIGGIPFEA 114
               R  +R P       R L+L PTREL  QV   F K   +  N+TVA   GG+    
Sbjct: 164 ----RFALRDPSKVESCTRVLVLLPTRELCVQVFAVFRKLVAELENVTVACAAGGLDLVQ 219

Query: 115 QNKKLERGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           Q + L R  D+L+ TPGR++DH  N     +  IEILV+DEADRMLD  F   ++ I S 
Sbjct: 220 QTQVLRRDPDILVATPGRLIDHLHNTPNFSLQEIEILVLDEADRMLDEFFASQMKEILSQ 279

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKC 232
              TRQT+LFSATMTD +Q++++  L  P +I +++ +  A+ +E  FV     +   + 
Sbjct: 280 TCKTRQTMLFSATMTDTVQELTDVALTKPMKIFISSNTDVADGLEQQFVRIRPGREGDRE 339

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           A++  L +S   ++  +I    +K    +   L   G  V  +HG++ Q +R++ L+NFK
Sbjct: 340 AMVAALNKS---LRMLLILYQTRKMAHRMHILLGLLGLKVVELHGSMSQTARLEALANFK 396

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT  +MV +D+AARGLDIP V  V N  +PN  ++Y+HR+GRT RAG+ G++ +LV + 
Sbjct: 397 NGTAHIMVCTDVAARGLDIPSVRTVINMTLPNNYKSYVHRVGRTARAGKQGRSISLVGES 456

Query: 353 DIKHIDAI 360
           + K +  I
Sbjct: 457 EWKILKMI 464



 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 144/368 (39%), Positives = 215/368 (58%), Gaps = 18/368 (4%)

Query: 3    FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
            FAD G   K++ A+ + G+  PTPIQ  +IP+ +   D+C  A TG+GKT +FVLP+L  
Sbjct: 654  FADYGFERKLLKALANVGWTTPTPIQKASIPVAVTGRDICACATTGSGKTGAFVLPILQ- 712

Query: 63   LEKGRARVRMP-------RTLILEPTRELAAQVADNFEK-YGKNYNLTVALLIGGIPFEA 114
                R  +R P       R L+L PTREL  QV   F K   +  N+TVA   GG+    
Sbjct: 713  ----RFALRDPSKVESCTRVLVLLPTRELCVQVFAVFRKLVAELENVTVACAAGGLDLVQ 768

Query: 115  QNKKLERGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L R  D+L+ TPGR++DH  N     +  IEILV+DEADRMLD  F   ++ I S 
Sbjct: 769  QTQVLRRDPDILVATPGRLIDHLHNTPNFSLQEIEILVLDEADRMLDEFFASQMKEILSQ 828

Query: 174  VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKC 232
               TRQT+LFSATMTD +Q++++  L  P +I +++ +  A+ +E  FV     +   + 
Sbjct: 829  TCKTRQTMLFSATMTDTVQELTDVALTKPMKIFISSNTDVADGLEQQFVRIRPGREGDRE 888

Query: 233  ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            A++  L +S   ++  +I    +K    +   L   G  V  +HG++ Q +R++ L+NFK
Sbjct: 889  AMVAALNKS---LRMLLILYQTRKMAHRMHILLGLLGLKVVELHGSMSQTARLEALANFK 945

Query: 293  EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
             GT  +MV +D+AARGLDIP V  V N  +PN  ++Y+HR+GRT RAG+ G++ +LV + 
Sbjct: 946  NGTAHIMVCTDVAARGLDIPSVRTVINMTLPNNYKSYVHRVGRTARAGKQGRSISLVGES 1005

Query: 353  DIKHIDAI 360
            + K +  I
Sbjct: 1006 EWKILKMI 1013


>gi|237739222|ref|ZP_04569703.1| ATP-dependent RNA helicase [Fusobacterium sp. 2_1_31]
 gi|229422830|gb|EEO37877.1| ATP-dependent RNA helicase [Fusobacterium sp. 2_1_31]
          Length = 529

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 213/372 (57%), Gaps = 15/372 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F +LGL  KV+  +   GY  PTPIQ  TIP +L+   D+ G AQTGTGKTA+F LP++
Sbjct: 9   EFRELGLGEKVLKVLSKKGYESPTPIQKLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E     ++    ++L PTRELA QVA+       +  + V  + GG   + Q K ++
Sbjct: 69  ENFETSDHHIQ---AIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR++D   R  L +N+++  V+DEAD ML+MGFI  I+ I +     ++ 
Sbjct: 126 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFVLDEADEMLNMGFIEDIEKILTFTNDDKRM 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
           L FSATM  E+ K+++  ++  + + V +   T +  E  +  V    ++   C ++   
Sbjct: 186 LFFSATMPPEIMKIAKTHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRII--- 242

Query: 239 LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               D  K   GIIFC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I
Sbjct: 243 ----DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKI 298

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI D+ HV N+ VP   E+Y+HRIGRTGRAG+ G A T +  ++ + 
Sbjct: 299 NILVATDVAARGIDINDLSHVINYAVPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRR 358

Query: 357 IDAIEKLIEKKV 368
           +  I+K ++K++
Sbjct: 359 LLQIQKAVKKEI 370


>gi|109091647|ref|XP_001099400.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Macaca
           mulatta]
          Length = 763

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 1/363 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 185 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 244

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 245 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 304

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 305 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 364

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 365 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 424

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 425 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 484

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 485 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 544

Query: 360 IEK 362
           I K
Sbjct: 545 IVK 547


>gi|330447422|ref|ZP_08311071.1| srmB, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491613|dbj|GAA05568.1| srmB, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 411

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 137/369 (37%), Positives = 214/369 (57%), Gaps = 5/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF++L L  +++ A+ + GY +PT +Q + IP  L   DV   A TGTGKTA+F+LPM+ 
Sbjct: 3   DFSELELDSELLQAIEEIGYSRPTVVQAQAIPHALDGKDVMASAPTGTGKTAAFLLPMIQ 62

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +    R L+L PTRELA QVAD      K+  L V  + GGI ++   + L 
Sbjct: 63  HLLDFPRKKPGPARVLVLTPTRELAIQVADQARTLAKHTMLKVFTITGGISYDEHAELLG 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR++++    K     IE L++DEADRMLDMGF   ++ +     +  Q+
Sbjct: 123 KTQDIVVATPGRLMEYIEAEKFDCRAIECLILDEADRMLDMGFGKVVERLNHECRWRSQS 182

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+  + +++ SE  L  P  +E   PS       H           K ALL+ +L
Sbjct: 183 LLFSATLEGKGVREFSEKILNEPVEVEAE-PSRRERKKIHQLYHRCDNMEHKLALLENIL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q   +  IIF   ++ +  L   LE  G     I G + Q +R  +++ F++G I ++
Sbjct: 242 KEQ--AERTIIFVKTRERLAVLRGQLETMGIPCNWIQGEMAQSARNNMITRFRDGVINVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV NFD+P  A+ Y+HRIGRT RAG+ G A +L+   D   I+ 
Sbjct: 300 IATDVAARGIDLPDVSHVINFDMPRTADVYLHRIGRTARAGKKGTAISLIEAHDQAMIER 359

Query: 360 IEKLIEKKV 368
           + + ++++V
Sbjct: 360 VSRYMKEEV 368


>gi|296102188|ref|YP_003612334.1| ATP-dependent RNA helicase DbpA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056647|gb|ADF61385.1| ATP-dependent RNA helicase DbpA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 457

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 136/354 (38%), Positives = 211/354 (59%), Gaps = 8/354 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY+  TP+Q   +P +L+  DV   A+TG+GKTA+F L +L  ++   A +   ++L+L 
Sbjct: 22  GYLTMTPVQAAALPAILEGRDVRVQAKTGSGKTAAFGLGLLQHID---ATLLQTQSLVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF AQ   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +  + ++ ++ LV+DEADRMLDMGF   I  +    P  RQTLLFSAT  D +  +S   
Sbjct: 139 KSTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPEDRQTLLFSATWPDAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            +NP  IE+++  +    IE  F  T  Q   K  LLQ+LL SQ    + ++FCN KK+ 
Sbjct: 199 QKNPLTIEIDSVDAL-PAIEQQFFETSQQ--GKIPLLQKLL-SQHQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L   G S  ++HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
           N+++    E ++HRIGRT RAG  G A +  A E+ +  + + ++++ K++W+N
Sbjct: 315 NYELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANILSEMLQIKLNWVN 368


>gi|242022378|ref|XP_002431617.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28, putative
           [Pediculus humanus corporis]
 gi|212516925|gb|EEB18879.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28, putative
           [Pediculus humanus corporis]
          Length = 788

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 142/415 (34%), Positives = 223/415 (53%), Gaps = 45/415 (10%)

Query: 10  PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
           P+ +  +++  GY + TPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P++  ++    
Sbjct: 368 PQEILDIIERVGYTEATPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLIMWIQSLPK 427

Query: 69  RVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             RM      P  +IL PTRELA Q+ +   K+G    +   +++GG+  E Q  +L  G
Sbjct: 428 IQRMEDADQGPYAIILAPTRELAQQIEEETNKFGNPLGIRTVVVVGGLSREEQGFRLRLG 487

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177
            +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P T     
Sbjct: 488 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 547

Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
                               RQT++F+ATM   +++++  +L+ P  + + +     E +
Sbjct: 548 TEEAEDDKFLLANYNSKKKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSVGKPVERV 607

Query: 218 EHC--FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
           E     V+   +  K C LL + ++        IIF NQKK    L   LEK G++ C +
Sbjct: 608 EQIVHIVSEQDKRRKLCELLARGVEPP-----VIIFVNQKKGADVLARGLEKLGYNACTL 662

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG   Q  R   LS+ K GT  ++VA+D+A RG+DI DV  V N+D+    E+Y HRIGR
Sbjct: 663 HGGKGQEQREYALSSLKNGTKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGR 722

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           TGRAG+HG A +   K+D      +++LI      L+  +S+  P L     AQH
Sbjct: 723 TGRAGKHGIAVSFCTKDDSGLFYDLKQLI------LSSPISTCPPELLNHPDAQH 771


>gi|292897893|ref|YP_003537262.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291197741|emb|CBJ44836.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|312170722|emb|CBX78984.1| putative ATP-dependent RNA helicase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 430

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 151/398 (37%), Positives = 227/398 (57%), Gaps = 24/398 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P+V+ A+   G+   TPIQ   +P  L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHH 70

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L      +GR +V  PR LIL PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 71  LLSHPAPEGR-QVNQPRALILAPTRELAVQIHADAEPLAQITGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G DVLI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDVLIGTTGRLIDYAKQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAA 189

Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234
            Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  L
Sbjct: 190 SQRLNMLFSATLSFRVRELAFENMNNAEYVEVEPDQKTGHRIKEELF---YPSNEEKMRL 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G
Sbjct: 247 LQTLIE-EEWPDRTIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG +G + +L  +E  
Sbjct: 306 DVDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSISLACEEYA 365

Query: 355 KHIDAIEKLIEKKV-------DWLNGDLSSLNPPLEKI 385
            ++ AIE+ I   +       D L GDL    PP +++
Sbjct: 366 LNLTAIEEYIGHSIPVSRYNSDALMGDL----PPPKRL 399


>gi|28897279|ref|NP_796884.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260876244|ref|ZP_05888599.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AN-5034]
 gi|260896422|ref|ZP_05904918.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus Peru-466]
 gi|260902727|ref|ZP_05911122.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ4037]
 gi|28805488|dbj|BAC58768.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088406|gb|EFO38101.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus Peru-466]
 gi|308092964|gb|EFO42659.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AN-5034]
 gi|308107646|gb|EFO45186.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ4037]
 gi|328472043|gb|EGF42920.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 10329]
          Length = 407

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 212/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L L   ++ A+ + GY +PT IQ + IP  L   D+   A TGTGKTA+FVLP L  
Sbjct: 5   FAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQY 64

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+    R   P R LIL PTRELA QVAD      KN  L +  + GG+ ++     L  
Sbjct: 65  LQDFPRRKPGPARILILTPTRELAMQVADQARALAKNTKLNIFTITGGVQYQEHADILAT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+ ++ +  +     IE LV+DEADRMLDMGF P +  +++   + +QTL
Sbjct: 125 TQDIVVATPGRLREYIDAERFDCRAIEWLVLDEADRMLDMGFAPTVDRLSNECRWRKQTL 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLL 239
           LFSAT+  + ++  + + L  P  I+  +P    + I   +  A  A++  K ALL+ ++
Sbjct: 185 LFSATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADSAEH--KLALLKHII 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  I+F   ++ +  L   LE        I G + Q  R   ++ F++GT+ ++
Sbjct: 243 TEQ--AERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFRDGTVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A ++V   D   +D 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR 360

Query: 360 IEKLIEKKV 368
           + + +++ +
Sbjct: 361 VARYVKEDI 369


>gi|292486656|ref|YP_003529526.1| putative ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
 gi|291552073|emb|CBA19110.1| putative ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
          Length = 430

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 151/398 (37%), Positives = 227/398 (57%), Gaps = 24/398 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P+V+ A+   G+   TPIQ   +P  L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHH 70

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L      +GR +V  PR LIL PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 71  LLSHPAPEGR-QVNQPRALILAPTRELAVQIHADAEPLAQITGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G DVLI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDVLIGTTGRLIDYAKQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAA 189

Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234
            Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  L
Sbjct: 190 SQRLNMLFSATLSFRVRELAFENMNNAEYVEVEPDQKTGHRIKEELF---YPSNEEKMRL 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ L++ +   +  IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G
Sbjct: 247 LQTLIEEEWPDRT-IIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG +G + +L  +E  
Sbjct: 306 DVDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSISLACEEYA 365

Query: 355 KHIDAIEKLIEKKV-------DWLNGDLSSLNPPLEKI 385
            ++ AIE+ I   +       D L GDL    PP +++
Sbjct: 366 LNLTAIEEYIGHSIPVSRYNSDALMGDL----PPPKRL 399


>gi|223041595|ref|ZP_03611794.1| ATP-dependent RNA helicase [Actinobacillus minor 202]
 gi|223017570|gb|EEF15982.1| ATP-dependent RNA helicase [Actinobacillus minor 202]
          Length = 443

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 213/368 (57%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L LSP+++ A+   GY +PT +Q +TIP  L   D+ G A TGTGKTA+F+LP +
Sbjct: 8   LTFEELDLSPQLLKALHKKGYKRPTSVQAQTIPYALDGRDLLGSAPTGTGKTAAFLLPAI 67

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QVA+  E+  +  NL++A + GG+ ++   +  
Sbjct: 68  QHLLDYPRRKPGAPRILILTPTRELAMQVAEQAEELAEFTNLSIATITGGVAYQNHGEVF 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++ +          +EIL+ DEADRML MGF    + I +   + + 
Sbjct: 128 NKNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187

Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           T LFSAT+  E L   +E  L +P +IE        + I+  +         K  LL +L
Sbjct: 188 TWLFSATLEGELLVDFAERLLNDPVQIEAEPSRRERKKIQQWYYHA-DNLDHKTKLLARL 246

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++  + M+  I+F  +++ V  L  +L K+G     + G++ Q  R + ++  K+  + +
Sbjct: 247 IKDFE-MEKVIVFVRRREAVRELSDTLRKRGLRSTYLEGDMAQTQRNQAINRLKDSVVNV 305

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V++D+AARG+DI DV  V NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D K + 
Sbjct: 306 LVSTDVAARGIDIDDVDFVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLG 365

Query: 359 AIEKLIEK 366
            I++  E+
Sbjct: 366 KIKRYTEE 373


>gi|122692565|ref|NP_001073740.1| probable ATP-dependent RNA helicase DDX27 [Bos taurus]
 gi|142980808|sp|A1A4H6|DDX27_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
           Full=DEAD box protein 27
 gi|119223998|gb|AAI26498.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Bos taurus]
 gi|296481114|gb|DAA23229.1| probable ATP-dependent RNA helicase DDX27 [Bos taurus]
          Length = 765

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 214/364 (58%), Gaps = 3/364 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 187 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 246

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++  +  ++T  L +GG+  ++Q   L 
Sbjct: 247 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALR 306

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 307 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 366

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQL 238
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+     +   + A++  L
Sbjct: 367 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 426

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L    T  + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I +
Sbjct: 427 LMRTFT-DHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDI 485

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K + 
Sbjct: 486 LVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLK 545

Query: 359 AIEK 362
            I K
Sbjct: 546 EIVK 549


>gi|300714781|ref|YP_003739584.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
 gi|299060617|emb|CAX57724.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
          Length = 430

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 150/391 (38%), Positives = 224/391 (57%), Gaps = 17/391 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P+V+ A+   G+   TPIQ   +P  L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHH 70

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L      +GR +V  PR LIL PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 71  LLSNPAPEGR-QVNQPRALILAPTRELAVQIHADAEPLTQATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYTKQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAA 189

Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234
            Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  L
Sbjct: 190 NQRLNMLFSATLSFRVRELAFENMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRL 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ LL+ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G
Sbjct: 247 LQTLLE-EEWPDRAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG +G + +L  +E  
Sbjct: 306 DVDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSISLACEEYA 365

Query: 355 KHIDAIEKLIEKK--VDWLNGD--LSSLNPP 381
            ++ AIE+ I     V   N D  ++ L PP
Sbjct: 366 LNLPAIEEYIGHSITVSRYNSDALMTELPPP 396


>gi|32425487|gb|AAH09304.2| DDX27 protein [Homo sapiens]
          Length = 769

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 1/363 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 191 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 250

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 251 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 310

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 311 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 370

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 371 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 430

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 431 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 490

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 491 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 550

Query: 360 IEK 362
           I K
Sbjct: 551 IVK 553


>gi|261820510|ref|YP_003258616.1| ATP-dependent RNA helicase SrmB [Pectobacterium wasabiae WPP163]
 gi|261604523|gb|ACX87009.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 441

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 135/354 (38%), Positives = 203/354 (57%), Gaps = 4/354 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L L   ++ A+ D GY +PT IQ + IP  ++  DV G A TGTGKTA+++LP+L 
Sbjct: 5   NFSELDLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQ 64

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++  R +   PR LIL PTRELA QVAD    +  + +L +A + GG+ +    +   
Sbjct: 65  HLIDFPRKKSGPPRILILTPTRELAMQVADQARAFAAHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT
Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184

Query: 181 LLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT+  D ++  +E  L  P  IE +      + I   +         K ALL   L
Sbjct: 185 MLFSATLEGDAIKDFAERLLNEPIEIESDPSRRERKKILQWYYRA-DDLKHKTALLCHQL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  ++ IIF  +++ V  L   L + G + C + G + Q  R + +    +G + ++
Sbjct: 244 KQPDVTRS-IIFVRKRERVHELVSWLHEAGINSCYLEGEMVQAKRNEAIKRMSDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+AARG+DI DV HVFNFD+P  A+ Y+HRIGRTGRAGR G A + V   D
Sbjct: 303 VATDIAARGIDIDDVSHVFNFDLPRTADTYLHRIGRTGRAGRKGCAISFVEAHD 356


>gi|146283021|ref|YP_001173174.1| ATP-dependent RNA helicase SrmB [Pseudomonas stutzeri A1501]
 gi|145571226|gb|ABP80332.1| ATP-dependent RNA helicase SrmB [Pseudomonas stutzeri A1501]
          Length = 455

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 215/369 (58%), Gaps = 5/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L  +++ AV +  +V+PTP+Q+  IP  L+  D+   AQTG+GKTA+FVLPML  
Sbjct: 14  FDQFALHERLLKAVAELKFVEPTPVQVAAIPPALEGRDLRVTAQTGSGKTAAFVLPMLNR 73

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G A+ R+  R LIL PTRELA Q     E++ +   +   L+ GG  F+ Q   L +
Sbjct: 74  L-IGDAQPRVDVRALILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK 132

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DVLI TPGR+++H N G L++ ++EILVIDEADRMLDMGF   +Q +       +QTL
Sbjct: 133 VPDVLIGTPGRLIEHLNAGSLILKDVEILVIDEADRMLDMGFAEDMQRLVGECQKRQQTL 192

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT     L+++    L++P  +++N  S   E+     + T    + K  L+  LL 
Sbjct: 193 LFSATSGGAGLREMVAKVLRDPLHLQLNRVSELNESTRQQII-TADDVAHKEKLVHWLL- 250

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + ++ +  +IF N +     L   L      V  +HG  DQ+ R   +   K+G ++++V
Sbjct: 251 ANESYQKAVIFTNTRAQADRLYGHLVASDIKVFVLHGEKDQKERKLAIERLKQGGVKVLV 310

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + +I
Sbjct: 311 ATDVAARGLDIEGMDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHNDWNLMSSI 370

Query: 361 EKLIEKKVD 369
           E+ ++++ +
Sbjct: 371 ERYLKQRFE 379


>gi|114682555|ref|XP_001166506.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 5 [Pan
           troglodytes]
          Length = 796

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 1/363 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 218 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 277

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 278 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 397

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 398 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 457

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 458 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 517

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 518 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 577

Query: 360 IEK 362
           I K
Sbjct: 578 IVK 580


>gi|226305684|ref|YP_002765644.1| ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
 gi|226184801|dbj|BAH32905.1| putative ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
          Length = 474

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 148/390 (37%), Positives = 213/390 (54%), Gaps = 28/390 (7%)

Query: 34  LVLQRHDVCGIAQTGTGKTASFVLPML---TILEKGRARVR-MPRTLILEPTRELAAQVA 89
           + L   D+ G A+TG GKT  F +P+L      E G A +   PR LI+ PTREL  QVA
Sbjct: 1   MALAGDDLIGQARTGMGKTFGFGVPLLHRIVTAENGTAVLDGTPRALIIVPTRELCIQVA 60

Query: 90  DNFEKYGK-----NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLM 144
            + E   K     +  L V  + GG P+EAQ   L++G DV++ TPGR+LD  N+  L++
Sbjct: 61  RDLENASKYLRVGDRGLQVLPIYGGRPYEAQISALQKGVDVVVGTPGRLLDLANQSHLIL 120

Query: 145 NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKR 204
             + +LV+DEAD MLD+GF+P I+ +  +VP  RQT+LFSATM   +  ++  FL  P  
Sbjct: 121 GKVGVLVLDEADEMLDLGFLPDIERLMGMVPDKRQTMLFSATMPGPIITLARTFLTQPTH 180

Query: 205 IEVNTPSSTA---ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNL 261
           I      S+A    T +H +    A    K  ++ ++LQ++      +IF   K+    +
Sbjct: 181 IRAEEAESSAVHDRTSQHIY---RAHALDKAEMVARVLQAEGRGAT-MIFTRTKRTAQKV 236

Query: 262 CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321
              L ++GFSV A+HG++ Q +R K L  F+ G + ++VA+D+AARG+DI DV HV N+ 
Sbjct: 237 ADDLAERGFSVGAVHGDLGQIAREKALKGFRNGKVDVLVATDVAARGIDIDDVTHVINYQ 296

Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
            P   + Y+HRIGRTGRAGR G A TLV  +DI     I+K +            SL  P
Sbjct: 297 CPEDEKTYVHRIGRTGRAGRTGIAVTLVDWDDIPRWQLIDKAL------------SLGIP 344

Query: 382 LEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
                 +   H  +   IP  + G  RR K
Sbjct: 345 DPVETYSSSPHLYEELSIPADAKGTVRRAK 374


>gi|329905038|ref|ZP_08273973.1| ATP-dependent RNA helicase DbpA [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547774|gb|EGF32547.1| ATP-dependent RNA helicase DbpA [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 461

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 149/386 (38%), Positives = 213/386 (55%), Gaps = 14/386 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LSP ++  +   GY + TPIQ K++P++L R D+   A+TG+GKTA+F + +L  
Sbjct: 8   FSTLALSPSMLANLDSLGYHEMTPIQAKSLPVILDRRDLIAQAKTGSGKTAAFGIGILQR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L      ++    L++ PTRELA QV++   +  +   N  +  L GG P   Q   LE 
Sbjct: 68  LNPTWFAIQ---ALVICPTRELADQVSNELRRLARFADNTKILTLCGGAPMRPQIASLEH 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  RG + ++ ++ LV+DEADRM+DMGF   I  I S  P  RQTL
Sbjct: 125 GAHIIVGTPGRLRDHIGRGSIDLSTVQTLVLDEADRMVDMGFYEEISGIVSACPTRRQTL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D+++K S  FL++P  I V         IE  F      Y  +   + +LL +
Sbjct: 185 LFSATYPDDIRKSSAPFLRDPTEITVEAQHDD-NRIEQRFYEV--GYDDRNDAVGRLLNN 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FCN K +   L   L  QGFS  A++G ++QR R +IL  F  G+  ++VA
Sbjct: 242 YKP-ASALAFCNTKIHCRELADELRAQGFSAMALYGELEQRERDEILVLFANGSCSVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E +IHR+GRTGR    G A +L A  + K +  IE
Sbjct: 301 TDVAARGLDIQSLEMVINVDVSKDTEVHIHRVGRTGRGAARGLALSLCAPNEKKWVKLIE 360

Query: 362 KLIEKKVDWLNGDLSSL----NPPLE 383
                 V W   DL+ L     P LE
Sbjct: 361 DYQHGPVSWF--DLADLEVAPGPALE 384


>gi|326476440|gb|EGE00450.1| ATP-dependent rRNA helicase RRP3 [Trichophyton tonsurans CBS
           112818]
 gi|326482119|gb|EGE06129.1| ATP-dependent rRNA helicase RRP3 [Trichophyton equinum CBS 127.97]
          Length = 474

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 218/369 (59%), Gaps = 10/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DLG+   +  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 51  FKDLGIIDSLCDACTSLGYKNPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQA 110

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++EK +        L+L PTRELA Q+ + FE  G   ++  A+++GG+   +Q+  L +
Sbjct: 111 LMEKPQPYF----GLVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSISLGK 166

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+LDH    K   + N++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 167 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRT 226

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LFSAT++ +++ +    L NP R+ +++    T  T+   ++    +Y K   L+  L 
Sbjct: 227 YLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKY-KDIYLVHIL- 284

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  IIF         L   L   GF    +HG + Q +R+  L  F+ G+  ++
Sbjct: 285 -NEFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDIL 343

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V NFD+P+ ++ YIHR+GRT RAG+ G+A ++V + +++    
Sbjct: 344 VATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQR 403

Query: 360 IEKLIEKKV 368
           IE  + K++
Sbjct: 404 IEAALGKQL 412


>gi|294783794|ref|ZP_06749118.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium sp.
           1_1_41FAA]
 gi|294480672|gb|EFG28449.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium sp.
           1_1_41FAA]
          Length = 529

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 213/372 (57%), Gaps = 15/372 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F +LGL  KV+  +   GY  PTPIQ  TIP +L+   D+ G AQTGTGKTA+F LP++
Sbjct: 9   EFRELGLGEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E     ++    ++L PTRELA QVA+       +  + V  + GG   + Q K ++
Sbjct: 69  ENFETSDHHIQ---AIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR++D   R  L +N+++  V+DEAD ML+MGFI  I+ I +     ++ 
Sbjct: 126 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFVLDEADEMLNMGFIEDIEKILTFTNDDKRM 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
           L FSATM  E+ K+++  ++  + + V +   T +  E  +  V    ++   C ++   
Sbjct: 186 LFFSATMPPEIMKIAKTHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRII--- 242

Query: 239 LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               D  K   GIIFC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I
Sbjct: 243 ----DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKI 298

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI D+ HV N+ VP   E+Y+HRIGRTGRAG+ G A T +  ++ + 
Sbjct: 299 NILVATDVAARGIDINDLSHVINYAVPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRR 358

Query: 357 IDAIEKLIEKKV 368
           +  I+K ++K++
Sbjct: 359 LLQIQKAVKKEI 370


>gi|119596074|gb|EAW75668.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, isoform CRA_d [Homo
           sapiens]
          Length = 763

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 1/363 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 218 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 277

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 278 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 397

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 398 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 457

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 458 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 517

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 518 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 577

Query: 360 IEK 362
           I K
Sbjct: 578 IVK 580


>gi|149277253|ref|ZP_01883395.1| DEAD box-related helicase (ATP-dependent RNA helicase) [Pedobacter
           sp. BAL39]
 gi|149232130|gb|EDM37507.1| DEAD box-related helicase (ATP-dependent RNA helicase) [Pedobacter
           sp. BAL39]
          Length = 412

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 141/374 (37%), Positives = 220/374 (58%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF +   +P++   +L  G+   TPIQ + IPL+L + D+   AQTGTGKT +++LP++
Sbjct: 1   MDFQEFNFNPELFEGLLAMGFRNATPIQQEAIPLILSKKDLIACAQTGTGKTGAYLLPIM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
            ++      +R   TLIL PTRELA Q+    E      N++   + GG   I +E Q +
Sbjct: 61  NMITG--TEIRHNNTLILAPTRELAQQIDLQVEALSYFTNISSLTVYGGGDGIAYEQQKR 118

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +  G D++I TPGR++ H + G L ++ ++ LV+DEADRMLDMGF   I  I S +P  
Sbjct: 119 SMRDGVDIIIATPGRLISHLSSGALKLDQLQHLVLDEADRMLDMGFYDDIMRIVSFLPKE 178

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSATM  +++K++   L NP++I +      A   +  ++      S+K  LL +
Sbjct: 179 RQTVLFSATMPPKIRKLASTLLSNPEQISIAISKPAAGINQQAYI---VHDSQKVKLLTE 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+++ D   + +IF + K+ V NL       GF   A H ++ Q+ R  IL  FK   + 
Sbjct: 236 LMKNVD-FPSILIFASTKEKVKNLGKVFRGLGFKAEAFHSDLGQKEREAILLEFKNKRVP 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ +D+ +RG+D+  +  V N+DVP+  E+YIHRIGRT RA   G A TLV  +D +  
Sbjct: 295 VLIGTDVLSRGIDVEGISLVINYDVPHDPEDYIHRIGRTARAATTGTAITLVNDKDKRKF 354

Query: 358 DAIEKLIEKKVDWL 371
             IEKLIE+++D +
Sbjct: 355 ANIEKLIERQIDRM 368


>gi|220917833|ref|YP_002493137.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219955687|gb|ACL66071.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 652

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 131/363 (36%), Positives = 208/363 (57%), Gaps = 5/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+GLS  V  AV + GY KPTP+Q  T   +    DV   ++TGTGKTA+F +P+L  
Sbjct: 22  FDDMGLSEPVRRAVAEHGYTKPTPVQSATFRPIRDGKDVIVRSKTGTGKTAAFSIPILER 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +  GR   R P  L++ PTRELA QVA+      K+ +L V  + GG     Q  KL+ G
Sbjct: 82  IPDGR---RKPSALVMCPTRELAIQVAEEVTALAKHRDLGVVTIYGGASMGDQLDKLKAG 138

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A++++ TPGRI DH  R  L +  + +  +DEAD ML+MGF   +  I   +P   Q LL
Sbjct: 139 AEIVVGTPGRIYDHIRRKTLRLEEVMVCCLDEADEMLNMGFFEEVTRILDHLPADVQQLL 198

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +++++  ++L +P+ I ++      E I +    T   Y K   LL  +    
Sbjct: 199 FSATVPADIEQIIHDYLTDPETILLSGDEYKVENINNVMYPTVDAYPKPRNLLYMI--GM 256

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  +  IIFCN + +   +   L + G+    ++G++ Q+ R ++++  K G ++ MVA+
Sbjct: 257 EEPEAAIIFCNTRSDTSLVTAVLNRNGYDAELLNGDLPQKERERVMAKVKRGEVRFMVAT 316

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI D+ HV N+ +P     ++HR+GRTGR G+ G + +LV+  D+  + A++K
Sbjct: 317 DIAARGIDISDLSHVINYSLPEDPAVFLHRVGRTGRIGKKGTSLSLVSGGDLHTLTALQK 376

Query: 363 LIE 365
             E
Sbjct: 377 KYE 379


>gi|152992308|ref|YP_001358029.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
 gi|151424169|dbj|BAF71672.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
          Length = 447

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 217/370 (58%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA L LS  +   +   GY +PTPIQ K IP +L   +    AQTG+GKT +++LP L
Sbjct: 1   MSFASLKLSTALTELLEGEGYARPTPIQQKLIPALLDGQNAIASAQTGSGKTLAYLLPAL 60

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +  E  +     PR  IL PT+ELA Q+ +    +    +L V LL GG     + ++
Sbjct: 61  QQINPEAEKVTHHYPRLFILSPTKELAQQIYEVSRPFVNALDLNVVLLQGGGRRTVETER 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G DV+I TP R L+H     + +  I  LV+DEAD M DMGF+ Y++ I +++    
Sbjct: 121 LKKGVDVIIATPQRALEHIEAQHIDIKAIRHLVVDEADMMFDMGFVGYLEKIFTMMTERS 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++ SAT+T  + K+++ +++  KRIE++ P   A+TI           SKK ALL  L
Sbjct: 181 QKIIVSATITPRVIKLAKTYIKPLKRIELDPPGKIADTITQMLYPVLR--SKKEALLAWL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S +  K  ++F  +K+    +  SL    + V  +HG    + R K L+ F+EG  ++
Sbjct: 239 ISSGNYEKV-LLFVRKKELADGVAESLRSWDYKVGILHGERTHQERKKSLNAFREGRYRI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N+D+P+   ++IHR+GRTGRAGR G A TLV+ ++I+ + 
Sbjct: 298 LVATDIAARGLDISDLDVVINYDIPHVKHDFIHRVGRTGRAGREGIAITLVSPDEIEQLH 357

Query: 359 AIEKLIEKKV 368
            ++K++  K+
Sbjct: 358 DLQKVLGGKI 367


>gi|317507502|ref|ZP_07965226.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
 gi|316254189|gb|EFV13535.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
          Length = 403

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 134/362 (37%), Positives = 212/362 (58%), Gaps = 14/362 (3%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           + P++V ++ +AG      IQ + +PL L  HD+ G A+TG GKT +F +P+L  + + +
Sbjct: 1   MHPEIVASLAEAGKHNAFAIQEQALPLALGGHDLIGQARTGMGKTLAFGVPLLQRVAEAQ 60

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT------VALLIGGIPFEAQNKKLER 121
           A    PR L++ PTREL  QV ++  +  K   L       +  L GG P+E Q   L++
Sbjct: 61  AE-DSPRALVVVPTRELCLQVTNDLAEASKQLKLADGRPTRIVSLYGGRPYEGQIATLQK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR+LD ++RG L +N I +LV+DEAD MLD+GF+P ++ I + +P  +QT+
Sbjct: 120 GVDVVVGTPGRLLDLWSRGDLKLNAIRMLVLDEADEMLDLGFLPDVEKIMAKLPTGKQTM 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           LFSAT+   +  ++  F+  P  I     +       T +H +    A    K  L+ + 
Sbjct: 180 LFSATIPGPVLTLARTFMTQPTHIRAEGGDLAPVHERTTQHVY---RAHALNKDELVSRF 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ++      +IF   K++   L   L  +GF+  ++HG++ Q +R + LS F++G I++
Sbjct: 237 LQAEGRGTT-MIFTRTKRSAGKLAEELTLRGFNAGSLHGDMSQGAREEALSGFRKGKIEI 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V +D+AARG+DI  + HV N+  P   + Y+HRIGRTGRAGR G A TLV  ED+   +
Sbjct: 296 LVCTDVAARGIDIDGITHVINYTCPEDEKVYVHRIGRTGRAGRTGNAITLVDWEDLPRWE 355

Query: 359 AI 360
            I
Sbjct: 356 YI 357


>gi|297833410|ref|XP_002884587.1| hypothetical protein ARALYDRAFT_477953 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330427|gb|EFH60846.1| hypothetical protein ARALYDRAFT_477953 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1097

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 131/335 (39%), Positives = 197/335 (58%), Gaps = 2/335 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL P+++  +L AG+  PTPIQ +T P+ LQ  D+  IA+TG+GKT  +++P   +
Sbjct: 438 FESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFIL 497

Query: 63  LEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   R   R  P  LIL PTRELA Q+ D   ++G++  ++   L GG P   Q K+LER
Sbjct: 498 LRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELER 557

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GAD+++ TPGR+ D     K+    + +LV+DEADRMLDMGF P I+ I + +   RQTL
Sbjct: 558 GADIVVATPGRLNDILEMKKIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEISPRRQTL 617

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +++AT   E++K++ + L NP ++ +      A               +K   L+Q+L+S
Sbjct: 618 MYTATWPKEVRKIASDLLVNPVQVNIGKVDELAANKAITQYVEVVPQMEKERRLEQILRS 677

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q+     IIFC+ K+   +L  S+ +  F    IHG+  Q  R  +LS F+ G   +++A
Sbjct: 678 QERGSKVIIFCSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERDWVLSQFRSGKSCILIA 736

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           +D+AARGLDI D+  V  +D P   E+Y+HRIGRT
Sbjct: 737 TDVAARGLDIKDIRVVITYDFPTGVEDYVHRIGRT 771


>gi|89902341|ref|YP_524812.1| ATP-dependent RNA helicase DbpA [Rhodoferax ferrireducens T118]
 gi|89347078|gb|ABD71281.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
          Length = 473

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 151/441 (34%), Positives = 231/441 (52%), Gaps = 18/441 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L+P  +  +   GY++ TPIQ  ++P  L   D+   A+TG+GKTA+F L +L  
Sbjct: 20  FESLALNPATLANLQQLGYLEMTPIQAASLPAALAGKDLIAQAETGSGKTAAFALALLER 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L   R  V+    L+L PTRELA QV     +  +   N+ V  L GG+    Q   LE+
Sbjct: 80  LNPRRFAVQ---ALVLCPTRELADQVTIEIRRLARATDNIKVVTLCGGVALRGQRASLEQ 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  R  L +  +  LV+DEADRMLDMGF   +  +    P  RQTL
Sbjct: 137 GAHIVVGTPGRVMDHLAREYLNLEALNTLVLDEADRMLDMGFFDDMATVAKQCPKERQTL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + ++K+++ F++ P R++V    + +   +  +  T A   +  ALL    + 
Sbjct: 197 LFSATYPEGIEKLAQQFMREPLRVQVAAQQTESLIEQRFYEVTRANRFEAVALLLNHFRP 256

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+     FCN K+   +L   L+ QGFS  A++G ++QR R ++L+ F   +  ++VA
Sbjct: 257 ISTLA----FCNTKQQCKDLVTYLQAQGFSALALYGELEQRERDQVLAQFSNRSASVLVA 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  +  V N D+    E ++HRIGRTGRAG  G A +L +  ++  +  IE
Sbjct: 313 TDVASRGLDITQLEAVINVDITPDPEVHVHRIGRTGRAGESGLALSLASMNEMGSVGKIE 372

Query: 362 KLIEKKVDWLNGD------LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS- 414
           +  +++  W   D         L PP+  + I      RK    P    G       YS 
Sbjct: 373 QYQKRESVWHKLDELKPTGQGPLLPPMVTLQIL---GGRKEKIRPGDVLGALTADAGYSR 429

Query: 415 SQKSHIPLKESEKISKLQQDI 435
            Q   I + E      +Q+DI
Sbjct: 430 EQIGKIVVTEFTTFVAVQRDI 450


>gi|313682403|ref|YP_004060141.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313155263|gb|ADR33941.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 417

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 138/365 (37%), Positives = 210/365 (57%), Gaps = 6/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    L   +V AV ++GY  PTPIQ K IPLVL+++D+   AQTG+GK+ASFVLP+L
Sbjct: 1   MPFLHFSLLSPIVQAVKESGYTHPTPIQEKVIPLVLEKNDILARAQTGSGKSASFVLPIL 60

Query: 61  TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLT--VALLIGGIPFEAQNK 117
            +    R+  +   + LIL PTREL  QVA  FE  GK+  +   V  +IGG     Q  
Sbjct: 61  HLWSLSRSEGKGKIKALILTPTRELTLQVAQAFESMGKHLPIKPKVLSIIGGESIGDQLY 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +++G D+L+ T GR LD   + ++ ++++E  V+DEAD+MLD+GF   ++ I   +P  
Sbjct: 121 AIQQGCDILVATSGRFLDVLKKKQMNLSHLEFFVLDEADKMLDLGFAEELELILDAIPQK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT   +++ ++     NP  + +     T + I    +    +   +  LL+ 
Sbjct: 181 RQNLLFSATYPPKMESIASKITPNPIHVTLEAEMPTVQNIHQRVIEVNPE--NRGPLLRH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL ++   +  ++F   K+   N+     K GFS  + +G++ Q  R  +L  FK+  I+
Sbjct: 239 LLNTE-KWEQVLVFMANKRASDNIAAKFRKYGFSADSFNGDLLQEDRNYVLEQFKKKKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ A+D+AARGLDI D+  V NFD+P    +YIHRIGRTGRAG+ G A + +   +  H 
Sbjct: 298 ILFATDIAARGLDIDDITCVVNFDLPRSPADYIHRIGRTGRAGKSGLAISFIGFAERDHF 357

Query: 358 DAIEK 362
             IEK
Sbjct: 358 ALIEK 362


>gi|90578403|ref|ZP_01234214.1| putative ATP-dependent RNA helicase DbpA [Vibrio angustum S14]
 gi|90441489|gb|EAS66669.1| putative ATP-dependent RNA helicase DbpA [Vibrio angustum S14]
          Length = 461

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 138/367 (37%), Positives = 219/367 (59%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P ++  +   GY   TPIQ +++PL+L+  DV    +TG+GKTA+F L +L  
Sbjct: 6   FSSLNLNPDLLSNLTSLGYDAMTPIQAQSLPLILEGKDVIAQGKTGSGKTAAFGLGLLQN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L+  R RV+   TL+L PTRELA QVA    +  +  +N+ V  L GG PF  Q   LE 
Sbjct: 66  LKVKRFRVQ---TLVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGTPFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ +H  +G L ++ +  LV+DEADRML+MGF   +  IT + P  RQTL
Sbjct: 123 GAHIIVGTPGRVEEHVRKGFLCLDELNTLVLDEADRMLEMGFQDSLDAITDVAPSDRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   ++  +++  ++NP  ++V +    +   +H F    +   +  A+  +LL S
Sbjct: 183 LFSATYPTQIASIAKRIMRNPVEVKVESNHDNSSISQH-FYKVESNDDRLRAV--RLLLS 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ +IFCN K+    +   LE  GFS  A+HG+++QR R + L  F   +  ++VA
Sbjct: 240 QHRPESCVIFCNTKREAQEISDDLEDYGFSSIALHGDLEQRERDRTLVLFANKSRSILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++  V N+ +    E ++HRIGRTGRAG  G A +L + ++   +  +E
Sbjct: 300 TDVAARGLDIDNLDAVINYHLARDTEVHVHRIGRTGRAGSKGIACSLFSDKEHYKVALLE 359

Query: 362 KLIEKKV 368
             +++ +
Sbjct: 360 DYLDRPI 366


>gi|326531018|dbj|BAK04860.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326531744|dbj|BAJ97876.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 415

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 140/355 (39%), Positives = 212/355 (59%), Gaps = 4/355 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D G    ++ A+   GY KPT IQ + +P+VL   D+ GIA+TG+GKTA+FVLPM+ 
Sbjct: 41  NFEDCGFPVPLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIV 100

Query: 62  -ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            I+++    +   P  +I  PTRELA Q+    +K+ K YNL VA + GG+    Q K+L
Sbjct: 101 HIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKPYNLQVAAVYGGVSKFEQFKEL 160

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++++ TPGR++D      L M      V+DEADRM D+GF P I++I   +   RQ
Sbjct: 161 KSGCEIVVATPGRLIDLLKMKALRMFRATYSVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 220

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  ++++++   L +  R+ V    S  E I+       +   K   LL+++ 
Sbjct: 221 TLLFSATMPYKVERLAREILTDLIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKMP 280

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D   + ++F  +K  V  + + L + GF V A+HG+ DQ SRM+ L  FK G   ++
Sbjct: 281 GMIDD-GDVLVFATKKARVDEVENQLNQHGFKVAALHGDKDQASRMETLQKFKSGIYHVL 339

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKED 353
           VA+D+AARGLDI  +  V NFD+    + +IHRIGRTGRAG + G A+TL+ +++
Sbjct: 340 VATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKE 394


>gi|197123043|ref|YP_002134994.1| DEAD/DEAH box helicase [Anaeromyxobacter sp. K]
 gi|196172892|gb|ACG73865.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp. K]
          Length = 651

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 131/363 (36%), Positives = 208/363 (57%), Gaps = 5/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+GLS  V  AV + GY KPTP+Q  T   +    DV   ++TGTGKTA+F +P+L  
Sbjct: 22  FDDMGLSEPVRRAVAEHGYTKPTPVQSATFRPIRDGKDVIVRSKTGTGKTAAFSIPILER 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +  GR   R P  L++ PTRELA QVA+      K+ +L V  + GG     Q  KL+ G
Sbjct: 82  IPDGR---RKPSALVMCPTRELAIQVAEEVTALAKHRDLGVVTIYGGASMGDQLDKLKAG 138

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A++++ TPGRI DH  R  L +  + +  +DEAD ML+MGF   +  I   +P   Q LL
Sbjct: 139 AEIVVGTPGRIYDHIRRKTLRLEEVMVCCLDEADEMLNMGFFEEVTRILDHLPADVQQLL 198

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +++++  ++L +P+ I ++      E I +    T   Y K   LL  +    
Sbjct: 199 FSATVPADIEQIIHDYLTDPETILLSGDEYKVENINNVMYPTVDAYPKPRNLLYMI--GM 256

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  +  IIFCN + +   +   L + G+    ++G++ Q+ R ++++  K G ++ MVA+
Sbjct: 257 EEPEAAIIFCNTRSDTSLVTAVLNRNGYDAELLNGDLPQKERERVMAKVKRGEVRFMVAT 316

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI D+ HV N+ +P     ++HR+GRTGR G+ G + +LV+  D+  + A++K
Sbjct: 317 DIAARGIDISDLSHVINYSLPEDPAVFLHRVGRTGRIGKKGTSLSLVSGGDLHTLTALQK 376

Query: 363 LIE 365
             E
Sbjct: 377 KYE 379


>gi|325191409|emb|CCA26186.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 463

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 146/391 (37%), Positives = 222/391 (56%), Gaps = 13/391 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+   +  A+   G+ KP+ IQ + IP  L   D+ G+A+TG+GKT +FV+P+L  
Sbjct: 31  FEQLGVDATLCEAIASLGWSKPSKIQQEAIPHGLAGRDLIGLAETGSGKTGAFVIPILQS 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +   R+     L+L PTRELA Q+++ FE  G +  L  A ++GGI    Q   L R 
Sbjct: 91  LLRSPQRLY---ALVLAPTRELAYQISEQFEALGASIGLKCACVVGGIDMMNQQIALARK 147

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             ++I TPGR++DH    K   +  I+ LV+DEADRML M F   I  I  L+P  R T 
Sbjct: 148 PHIIIATPGRLVDHLENTKGFSLRTIKFLVLDEADRMLSMDFEEEINQIVQLMPSERNTY 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT ++ K+    L NP +IE+    +T E +   ++   A++ K C L    + +
Sbjct: 208 LFSATMTSKVAKLQRASLLNPIKIEITHKFATPENLRQHYLFIPAKF-KDCYL--SYILN 264

Query: 242 QDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   ++ +IF   CN  + V  +  +L   GF    +HG + Q +R+  L+ FK  T ++
Sbjct: 265 EVAGQSILIFASTCNGTQKVTLMLRNL---GFQAICLHGQMSQPNRLGALNKFKAKTRKI 321

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V +D+A+RGLDIP V  V N+D+P   ++YIHR+GRT RAGR G A + V + D++   
Sbjct: 322 LVCTDVASRGLDIPSVDVVMNYDIPTHGKDYIHRVGRTARAGRAGIAVSFVTQYDVELYQ 381

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
            IE L+ KK+D    D  ++    E++  AQ
Sbjct: 382 RIEFLLGKKLDAYPCDEQTVLIMQERVGEAQ 412


>gi|224593278|ref|NP_060365.7| probable ATP-dependent RNA helicase DDX27 [Homo sapiens]
 gi|29427946|sp|Q96GQ7|DDX27_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
           Full=DEAD box protein 27
 gi|55663788|emb|CAH70236.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
 gi|56203613|emb|CAI22427.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
 gi|116497013|gb|AAI26288.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
 gi|119596072|gb|EAW75666.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, isoform CRA_b [Homo
           sapiens]
 gi|120660308|gb|AAI30276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
 gi|219519028|gb|AAI44126.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
 gi|313883552|gb|ADR83262.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [synthetic construct]
          Length = 796

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 1/363 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 218 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 277

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 278 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 397

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 398 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 457

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 458 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 517

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 518 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 577

Query: 360 IEK 362
           I K
Sbjct: 578 IVK 580


>gi|17555296|ref|NP_499069.1| hypothetical protein T26G10.1 [Caenorhabditis elegans]
 gi|465975|sp|P34580|DDX47_CAEEL RecName: Full=Putative ATP-dependent RNA helicase T26G10.1
 gi|3880293|emb|CAA82362.1| C. elegans protein T26G10.1, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 489

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 138/412 (33%), Positives = 234/412 (56%), Gaps = 9/412 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA+LG+S  +  A    G++KP+ IQ   +P  LQ  DV G+A+TG+GKT +F +P+L +
Sbjct: 46  FAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQS 105

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  +A       L+L PTRELA Q+   FE  G    L  A+++GG+   AQ   L R
Sbjct: 106 LLDHPQAFF----CLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALAR 161

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR++DH    K   +  ++ L++DEADR+L+M F   +  I  ++P  R+T
Sbjct: 162 RPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRT 221

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+    L++P R+ V++   T + ++  ++    +Y K+  L+   L 
Sbjct: 222 YLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKY-KETYLV--YLL 278

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + I+FC      + +   L + G     +HG + Q  R+  L+ FK    +++V
Sbjct: 279 NEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILV 338

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARGLDIP V  V N+D+P+++++Y+HR+GRT RAGR G A T+V + D++    I
Sbjct: 339 CTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKI 398

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           E  + KK+D      + +   +E+   A  N   +   + +K     +R++N
Sbjct: 399 EANLGKKLDEYKCVENEVMVLVERTQEATENARIEMKEMDEKKKSGKKRRQN 450


>gi|302508139|ref|XP_003016030.1| hypothetical protein ARB_05427 [Arthroderma benhamiae CBS 112371]
 gi|291179599|gb|EFE35385.1| hypothetical protein ARB_05427 [Arthroderma benhamiae CBS 112371]
          Length = 474

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 218/369 (59%), Gaps = 10/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DLG+   +  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 51  FKDLGIIDSLCDACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQA 110

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++EK +        L+L PTRELA Q+ + FE  G   ++  A+++GG+   +Q+  L +
Sbjct: 111 LMEKPQPYF----GLVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSISLGK 166

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+LDH    K   + N++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 167 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRT 226

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LFSAT++ +++ +    L NP R+ +++    T  T+   ++    +Y K   L+  L 
Sbjct: 227 YLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKY-KDIYLVHIL- 284

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  IIF         L   L   GF    +HG + Q +R+  L  F+ G+  ++
Sbjct: 285 -NEFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDIL 343

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V NFD+P+ ++ YIHR+GRT RAG+ G+A ++V + +++    
Sbjct: 344 VATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQR 403

Query: 360 IEKLIEKKV 368
           IE  + K++
Sbjct: 404 IEAALGKQL 412


>gi|308188835|ref|YP_003932966.1| ATP-dependent RNA helicase [Pantoea vagans C9-1]
 gi|308059345|gb|ADO11517.1| putative ATP-dependent RNA helicase [Pantoea vagans C9-1]
          Length = 430

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 139/373 (37%), Positives = 217/373 (58%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV A+   G+   TPIQ   +P  L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVVEALDSKGFQYCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHH 70

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L      +GR +V  PR LIL PTRELA Q+  + E    +  L + L  GG  ++ Q K
Sbjct: 71  LLSHPAAEGR-QVNQPRALILAPTRELAVQIHADAEPLTASTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE+G D+L+ T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLEQGVDILVATTGRLIDYAKQNHVNLGAIQVMVLDEADRMFDLGFIKDIRWLFRRMPPA 189

Query: 178 RQ--TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            Q  ++LFSAT++  +++++   + + + +EV     T   I+      Y    +K  LL
Sbjct: 190 TQRLSMLFSATLSYRVRELAFEHMNSAEYVEVEPEQKTGHRIQEELF--YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q LL+ ++     I+F N K    ++   L   G  V  + G++ Q+ R++IL +F +G 
Sbjct: 248 QTLLE-EEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 VDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ +IE+ I   +
Sbjct: 367 NLPSIEEYIGHSI 379


>gi|304398130|ref|ZP_07380005.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304354416|gb|EFM18788.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 430

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 140/373 (37%), Positives = 217/373 (58%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV A+   G+   TPIQ   +P  L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVVEALDTKGFQYCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHH 70

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L      +GR +V  PR LIL PTRELA Q+  + E    +  L + L  GG  ++ Q K
Sbjct: 71  LLSHPAAEGR-QVNQPRALILAPTRELAVQIHADAEPLTASTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE+G D+L+ T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLEQGVDILVATTGRLIDYAKQNHVNLGAIQVMVLDEADRMFDLGFIKDIRWLFRRMPPA 189

Query: 178 RQ--TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            Q  ++LFSAT++  +++++   + + + +EV     T   I+      Y    +K  LL
Sbjct: 190 TQRLSMLFSATLSYRVRELAFEHMNSAEYVEVEPEQKTGHRIQEELF--YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q LL+ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G 
Sbjct: 248 QTLLE-EEWPDRAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 VDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ +IE+ I   +
Sbjct: 367 NLPSIEEYIGHSI 379


>gi|271502412|ref|YP_003335438.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270345967|gb|ACZ78732.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
          Length = 428

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 215/369 (58%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F+D  L P+V+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPQVIEALENKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT       +   PR LI+ PTRELA Q+  + E   K   L + L  GG  ++ Q K 
Sbjct: 71  LLTHPAPAERQTNQPRALIMAPTRELAVQIHADAEALAKATGLRLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + M  I+++V+DEADRM D+GFI  I+ +   +P T 
Sbjct: 131 LEDGVDILIGTTGRLIDYTKQNHIHMGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPTN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F +G+
Sbjct: 248 QTLIE-EEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGS 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGASGVSISLACEEYAL 366

Query: 356 HIDAIEKLI 364
           ++ AIE  I
Sbjct: 367 NLPAIEDYI 375


>gi|229513487|ref|ZP_04402951.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae TMA 21]
 gi|229349364|gb|EEO14320.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae TMA 21]
          Length = 439

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 136/351 (38%), Positives = 215/351 (61%), Gaps = 7/351 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+   TPIQ +++P +L+  DV G  +TG+GKTA+F L +L+ L   R RV+    L+L 
Sbjct: 2   GFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ---ALVLC 58

Query: 80  PTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA +    G+  +N+ V  L GG+P   Q   LE GA +L+ TPGRILDH +
Sbjct: 59  PTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPGRILDHLS 118

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           + ++ ++ +  LV+DEADRML+MGF   ++ I +     RQTLLFSAT    +++++++ 
Sbjct: 119 KDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAAAERQTLLFSATYPASIEQIAQSV 178

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            +N   I+V     T+ +I   F       ++  AL   LL  Q T  + ++FCN K+ V
Sbjct: 179 TRNALMIKVEATHDTS-SIRQYFYKVEGSAARDEALETLLLHHQPT--SSVVFCNTKREV 235

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            N+  +L + GFSV  +HG+++QR R + L  F   +I ++VA+D+AARGLD+ ++  VF
Sbjct: 236 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 295

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           N+D+    E ++HRIGRTGRAG  G AF+  +  +   +  I++ ++  ++
Sbjct: 296 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIAIE 346


>gi|229524545|ref|ZP_04413950.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae bv. albensis
           VL426]
 gi|229338126|gb|EEO03143.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae bv. albensis
           VL426]
          Length = 439

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 137/351 (39%), Positives = 216/351 (61%), Gaps = 7/351 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+   TPIQ +++P +L+  DV G  +TG+GKTA+F L +L+ L   R RV+    L+L 
Sbjct: 2   GFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ---ALVLC 58

Query: 80  PTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA +    G+  +N+ V  L GG+P   Q   LE GA +L+ TPGRILDH +
Sbjct: 59  PTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPGRILDHLS 118

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           + ++ ++ +  LV+DEADRML+MGF   ++ I +  P  RQTLLFSAT    +++++++ 
Sbjct: 119 KDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFSATYPASIEQIAQSV 178

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            +N   I+V     T+ +I   F       ++  AL   LL  Q T  + ++FCN K+ V
Sbjct: 179 TRNALMIKVEATHDTS-SIRQYFYKVEGSAARDEALETLLLHHQPT--SSVVFCNTKREV 235

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            N+  +L + GFSV  +HG+++QR R + L  F   +I ++VA+D+AARGLD+ ++  VF
Sbjct: 236 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 295

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           N+D+    E ++HRIGRTGRAG  G AF+  +  +   +  I++ ++  ++
Sbjct: 296 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIAIE 346


>gi|221481559|gb|EEE19941.1| DEAD-box helicase family protein [Toxoplasma gondii GT1]
          Length = 1158

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 140/381 (36%), Positives = 213/381 (55%), Gaps = 35/381 (9%)

Query: 3    FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
            +A+  L  +++ AV  A Y +PTPIQ++ IP+ L++ D+ GIA+TG+GKTA+FVLPMLT 
Sbjct: 739  WAESALPWELIEAVKHANYDRPTPIQMQAIPIALEQRDLIGIAETGSGKTAAFVLPMLTY 798

Query: 63   LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + KG   +        P  LIL P+RELA Q+ +  +K+          ++GG   E Q 
Sbjct: 799  V-KGLPPLNEDTGQDGPYALILAPSRELALQIDEETQKFASFCKCQTVAVVGGRSAETQA 857

Query: 117  KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             +L RGA+++I TPGR+ D   +   ++N    +V+DEADRM+DMGF   +  I   +P 
Sbjct: 858  FQLRRGAEIVIGTPGRVKDCLEKAYTVLNQCNYVVLDEADRMIDMGFEEIVNFILDQIPT 917

Query: 177  T------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS 212
            +                        R T +FSATM   +++++  +L+ P  I +  P +
Sbjct: 918  SNLKSNDEALILQQEMQAKAGHRLYRLTQMFSATMPPAVERLARKYLRQPSYISIGDPGA 977

Query: 213  TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
                IE      +   ++K   LQ +L+  +     ++F NQKK+   L   L K G+S 
Sbjct: 978  GKRAIEQRV--EFVPEARKKQRLQDVLE--NATPPVMVFVNQKKSADALAKVLGKLGYSA 1033

Query: 273  CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
            C++HG   Q +R   LS+FKEG+  ++VA+D+A RG+D+  V  V NFD+P   E Y HR
Sbjct: 1034 CSLHGGKAQENREAALSSFKEGSHDVLVATDVAGRGIDVEGVQLVVNFDMPKDIEAYTHR 1093

Query: 333  IGRTGRAGRHGKAFTLVAKED 353
            IGRTGRAGR G A + + +ED
Sbjct: 1094 IGRTGRAGRKGLAISFLTEED 1114


>gi|188533127|ref|YP_001906924.1| ATP-dependent RNA helicase SrmB [Erwinia tasmaniensis Et1/99]
 gi|188028169|emb|CAO96027.1| ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99]
          Length = 442

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 134/353 (37%), Positives = 205/353 (58%), Gaps = 4/353 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ ++ + G+ +PT IQ + IP  L+  DV G A TGTGKTA+++LP L  
Sbjct: 6   FSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVAD   +  K+ +L +A + GG+ F    +    
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAFMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DV++ T GR+L +          +E L++DEADRMLDMGF   I+ I++   + +QTL
Sbjct: 126 NQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQTL 185

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  E ++  +E  L  P  IE +      + I+  +         K ALL  LL+
Sbjct: 186 LFSATLEGEAIKDFAERILNEPVEIEADPARRERKKIQQWYYRA-DDIKHKTALLLHLLK 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   ++F  +++ V  +C  L + G +   + G + Q  R + +    +G + ++V
Sbjct: 245 -QPEVTRAVVFVRKRERVHEVCGWLREAGINTSYLEGELVQAKRNEAIKRVVDGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           A+D+AARG+DI DV HVFNFD+P  ++ Y+HRIGRTGRAG+ G A +LV   D
Sbjct: 304 ATDIAARGIDIDDVSHVFNFDMPVTSDTYLHRIGRTGRAGKKGIAISLVEAHD 356


>gi|237843843|ref|XP_002371219.1| DEAD-box ATP-dependent RNA helicase, putative [Toxoplasma gondii
            ME49]
 gi|211968883|gb|EEB04079.1| DEAD-box ATP-dependent RNA helicase, putative [Toxoplasma gondii
            ME49]
          Length = 1158

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 140/381 (36%), Positives = 213/381 (55%), Gaps = 35/381 (9%)

Query: 3    FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
            +A+  L  +++ AV  A Y +PTPIQ++ IP+ L++ D+ GIA+TG+GKTA+FVLPMLT 
Sbjct: 739  WAESALPWELIEAVKHANYDRPTPIQMQAIPIALEQRDLIGIAETGSGKTAAFVLPMLTY 798

Query: 63   LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + KG   +        P  LIL P+RELA Q+ +  +K+          ++GG   E Q 
Sbjct: 799  V-KGLPPLNEDTGQDGPYALILAPSRELALQIDEETQKFASFCKCQTVAVVGGRSAETQA 857

Query: 117  KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             +L RGA+++I TPGR+ D   +   ++N    +V+DEADRM+DMGF   +  I   +P 
Sbjct: 858  FQLRRGAEIVIGTPGRVKDCLEKAYTVLNQCNYVVLDEADRMIDMGFEEIVNFILDQIPT 917

Query: 177  T------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS 212
            +                        R T +FSATM   +++++  +L+ P  I +  P +
Sbjct: 918  SNLKSNDEALILQQEMQAKAGHRLYRLTQMFSATMPPAVERLARKYLRQPSYISIGDPGA 977

Query: 213  TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
                IE      +   ++K   LQ +L+  +     ++F NQKK+   L   L K G+S 
Sbjct: 978  GKRAIEQRV--EFVPEARKKQRLQDVLE--NATPPVMVFVNQKKSADALAKVLGKLGYSA 1033

Query: 273  CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
            C++HG   Q +R   LS+FKEG+  ++VA+D+A RG+D+  V  V NFD+P   E Y HR
Sbjct: 1034 CSLHGGKAQENREAALSSFKEGSHDVLVATDVAGRGIDVEGVQLVVNFDMPKDIEAYTHR 1093

Query: 333  IGRTGRAGRHGKAFTLVAKED 353
            IGRTGRAGR G A + + +ED
Sbjct: 1094 IGRTGRAGRKGLAISFLTEED 1114


>gi|149036001|gb|EDL90667.1| rCG38846 [Rattus norvegicus]
          Length = 497

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 155/416 (37%), Positives = 232/416 (55%), Gaps = 17/416 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L LS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAELRLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     L+L PTRELA Q+A+ F   GK   L   +++GG+    Q  +L R 
Sbjct: 64  LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSRK 120

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178
             V+I TPGR+ DH        M  I  LV+DEADR+L+ G   F   ++ I S VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+TD L+++       P   E      T E ++  ++    +   K A L  L
Sbjct: 181 QTLLFSATLTDTLKELQGLATNQPFFWEAQATVRTVEQLDQRYLLVPEKV--KDAYLVHL 238

Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q+ QD +++   IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK  T
Sbjct: 239 VQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALARFKSST 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI 
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            + AIE+ I++++  L  + + +   L ++++      R+   I  +++ FD +K+
Sbjct: 359 LLHAIEEEIKQQLAELAVEEAQVLQILTQVNV-----VRRECEIKLEASHFDEKKE 409


>gi|302660698|ref|XP_003022025.1| hypothetical protein TRV_03842 [Trichophyton verrucosum HKI 0517]
 gi|291185951|gb|EFE41407.1| hypothetical protein TRV_03842 [Trichophyton verrucosum HKI 0517]
          Length = 474

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 218/369 (59%), Gaps = 10/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DLG+   +  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 51  FKDLGIIDSLCDACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQA 110

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++EK +        L+L PTRELA Q+ + FE  G   ++  A+++GG+   +Q+  L +
Sbjct: 111 LMEKPQPYF----GLVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSISLGK 166

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+LDH    K   + N++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 167 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRT 226

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LFSAT++ +++ +    L NP R+ +++    T  T+   ++    +Y K   L+  L 
Sbjct: 227 YLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKY-KDIYLVHIL- 284

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  IIF         L   L   GF    +HG + Q +R+  L  F+ G+  ++
Sbjct: 285 -NEFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDIL 343

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V NFD+P+ ++ YIHR+GRT RAG+ G+A ++V + +++    
Sbjct: 344 VATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQR 403

Query: 360 IEKLIEKKV 368
           IE  + K++
Sbjct: 404 IEAALGKQL 412


>gi|145640383|ref|ZP_01795967.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|145274969|gb|EDK14831.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.4-21]
          Length = 402

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 130/362 (35%), Positives = 207/362 (57%), Gaps = 4/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP L  
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++        
Sbjct: 66  LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QTL
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  EL    +E  L +P +++        + I   +    +    K  LL + ++
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++  + GI+F  ++++   L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 245 TEEVTR-GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EK 362
           ++
Sbjct: 364 KR 365


>gi|50305787|ref|XP_452854.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660562|sp|Q6CT85|RRP3_KLULA RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|49641987|emb|CAH01705.1| KLLA0C14608p [Kluyveromyces lactis]
          Length = 487

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 149/389 (38%), Positives = 224/389 (57%), Gaps = 14/389 (3%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +L L P+++ A  +  Y KPTPIQ K IP  L+  D+ G+AQTG+GKTA+F +P+L  L 
Sbjct: 71  ELDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW 130

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
             +         IL PTRELA Q+ + F+  G    +    ++GG+    Q + L R   
Sbjct: 131 HDQQPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPH 187

Query: 125 VLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQTLL 182
           ++I TPGR++DH    K   +  ++ LV+DEADR+LDM F P +  I +++P   R T L
Sbjct: 188 IIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYL 247

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATMT ++ K+    L NP +  V+    T +T+    +        K   L  LL ++
Sbjct: 248 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL--KNTFLIYLL-NE 304

Query: 243 DTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              K+ I+F   K N   + NLC+ LE   FS  A+HG+++Q  R   L  FK G   ++
Sbjct: 305 FIGKSTIVFTRTKANAERISNLCNLLE---FSATALHGDLNQNQRTGALDLFKAGKRSIL 361

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV++ D++ I  
Sbjct: 362 VATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 421

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           IE ++ KK+   N D  ++    + +D A
Sbjct: 422 IEDVLGKKLPKENVDKDAILALRDSVDKA 450


>gi|187926489|ref|YP_001892834.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
 gi|241665976|ref|YP_002984335.1| ATP-dependent RNA helicase DbpA [Ralstonia pickettii 12D]
 gi|187728243|gb|ACD29407.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
 gi|240868003|gb|ACS65663.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
          Length = 465

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 147/392 (37%), Positives = 223/392 (56%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P V+  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 10  FSTLALAPAVLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFALALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+     V+    ++L PTRELA QVA    +  +   N+ V  L GG P   Q   LE 
Sbjct: 70  LDARSFDVQ---AMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH  RG L +  ++ LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 127 GAHVIVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPADRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K+S+  L+NPK +++      ++  +  +  T +Q   +   + QLL+ 
Sbjct: 187 LFSATYPEGIAKLSQRILRNPKEVKLEERHDDSKIRQRFYEVTDSQ---RLHAVGQLLKH 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   + FCN K+   +L   L  QG    A+HG ++QR R ++L  F   +  ++VA
Sbjct: 244 YRPVST-LAFCNTKQQCRDLLDVLRAQGIHALALHGELEQRERDQVLIQFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA  +G A +L + +++  +  IE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADENGWALSLASMDEMGRVGNIE 362

Query: 362 KLIEKKVDWL------NGDLSSLNPPLEKIDI 387
           + + ++V+W        G+ + L PP+E + I
Sbjct: 363 EAMGREVEWHQLDELDTGNDAPLLPPMETLQI 394


>gi|195352029|ref|XP_002042518.1| GM23393 [Drosophila sechellia]
 gi|194124387|gb|EDW46430.1| GM23393 [Drosophila sechellia]
          Length = 519

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 137/369 (37%), Positives = 217/369 (58%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLGL+  +  A  +  +  P+ IQ + IP+ LQ  DV G+A+TG+GKT +F LP+L
Sbjct: 65  LTWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 124

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      L+L PTRELA Q+ + FE  G    +   +++GG+   AQ  +L 
Sbjct: 125 HALLENPQRYF---ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 181

Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGR++DH    K   +  I+ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 182 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 241

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L++P +IEV+    T E ++  ++    +Y  K   L  +L
Sbjct: 242 TFLFSATMTKKVKKLQRASLKDPVKIEVSNKYQTVEQLQQSYLFIPVKY--KDVYLVHIL 299

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK     ++
Sbjct: 300 -NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKTKNRSIL 358

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA TLV++ DI+    
Sbjct: 359 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQR 418

Query: 360 IEKLIEKKV 368
           IE L+ K++
Sbjct: 419 IEHLLGKQL 427


>gi|330977878|gb|EGH77781.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 445

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 137/369 (37%), Positives = 214/369 (57%), Gaps = 5/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 2   FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G A+VR+  R +IL PTRELA Q     E++ +   +   L+ GG  F+ Q   L +
Sbjct: 62  L-IGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+LI TPGR+L+  N G L + ++E+LV+DEADRMLDMGF   ++ +        QT+
Sbjct: 121 VPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 180

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT     L+++    L++P+ ++VN+ S  A    H  +       K+  L    L 
Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVL--NWLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +T +  IIF N +     L   L    +    +HG+ DQ+ R   +   K+G  ++MV
Sbjct: 239 ANETYQKAIIFTNTRAMADRLYCRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V NFD+P   ++Y+HR+GRTGRAG  G A +L+   D   + ++
Sbjct: 299 ATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSV 358

Query: 361 EKLIEKKVD 369
           E+ +++  +
Sbjct: 359 ERYLKQSFE 367


>gi|315434409|gb|AAK73934.2|AC025726_27 Hypothetical protein Y71G12B.8 [Caenorhabditis elegans]
          Length = 739

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 140/361 (38%), Positives = 203/361 (56%), Gaps = 1/361 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  + LS +++ A   AGY  PTPIQ   IP+ L   D+C  A TGTGKTA+FVLP+L
Sbjct: 148 VSFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPIL 207

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          R L+L PTRELA QV   F K      L V L  GG+  +AQ   L 
Sbjct: 208 ERMIYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALR 267

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            G DV++ TPGR++DH  N     ++NIE+LV+DEADRML+  F   +  +  L    RQ
Sbjct: 268 SGPDVVVATPGRLIDHLHNSPSFNLSNIEVLVLDEADRMLEEAFRDQMNELIRLCAQNRQ 327

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATMT+E+ +++   LQ P +I +N  + TA  +   F+   A        +   L
Sbjct: 328 TLLFSATMTEEIDELASMSLQKPVKIFINENTDTALKLRQEFIRIRAGRETDREAMVAAL 387

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    N I+F   KK+   +   L   G  V  +  ++ Q  R++ LS FK+  I ++
Sbjct: 388 VTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKAEIDVL 447

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++DLA+RGLDI  V  V N ++P   + YIHR+GRT RAG+ G++ +LV +++ K +  
Sbjct: 448 VSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEDERKLLKE 507

Query: 360 I 360
           I
Sbjct: 508 I 508


>gi|300783976|ref|YP_003764267.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
 gi|299793490|gb|ADJ43865.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
          Length = 534

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 140/366 (38%), Positives = 209/366 (57%), Gaps = 12/366 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL   ++ A+ +AG   P PIQ  TIP  L   DV G AQTG+GKT +F L ML  
Sbjct: 46  FAELGLPEPLLRALSEAGINSPFPIQSATIPDALAGRDVLGRAQTGSGKTLAFGLAMLAR 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G+AR + PR LIL PTRELA QVAD+     K+  L     +GG+ F  Q   L RG
Sbjct: 106 LADGKARPKRPRALILVPTRELAMQVADSLTPLAKSLGLWCRTAVGGMAFARQADALSRG 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI TPGR+ DH  +G   + +   + +DEAD+M DMGF+P ++ I  L P   Q LL
Sbjct: 166 VDLLIATPGRLSDHVRQGTAHLGDCNFIALDEADQMADMGFMPQVREIMDLTPQGGQRLL 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  ++ ++ + +L +P    V   +++  T++H  +    Q        +Q + +Q
Sbjct: 226 FSATLDGDVNRLVKQYLSDPVTHSVAPSTASVTTMDHHVLQVSHQD-------KQDVITQ 278

Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++G  I+F   K +V  L   L +QG +  A+HG   Q  R ++L++FKEG   ++V
Sbjct: 279 IGARDGRTIMFVRTKHHVDRLAERLREQGVNAAALHGGKTQGQRNRVLADFKEGHTPVLV 338

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ + D+  V + D     ++Y+HR GRT RAG  G   T VA  D + +  +
Sbjct: 339 ATDVAARGIHVDDISLVLHVDPAADHKDYLHRAGRTARAGASGVVVT-VATHDQRRM--V 395

Query: 361 EKLIEK 366
            +L ++
Sbjct: 396 RRLTDR 401


>gi|229507384|ref|ZP_04396889.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae BX 330286]
 gi|229509692|ref|ZP_04399173.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae B33]
 gi|229516817|ref|ZP_04406263.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC9]
 gi|229521626|ref|ZP_04411044.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae TM 11079-80]
 gi|229527506|ref|ZP_04416898.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 12129(1)]
 gi|229606890|ref|YP_002877538.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MJ-1236]
 gi|229335138|gb|EEO00623.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 12129(1)]
 gi|229341220|gb|EEO06224.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae TM 11079-80]
 gi|229345880|gb|EEO10852.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC9]
 gi|229353166|gb|EEO18105.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae B33]
 gi|229354889|gb|EEO19810.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae BX 330286]
 gi|229369545|gb|ACQ59968.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MJ-1236]
          Length = 439

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 137/351 (39%), Positives = 216/351 (61%), Gaps = 7/351 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+   TPIQ +++P +L+  DV G  +TG+GKTA+F L +L+ L   R RV+    L+L 
Sbjct: 2   GFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ---ALVLC 58

Query: 80  PTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA +    G+  +N+ V  L GG+P   Q   LE GA +L+ TPGRILDH +
Sbjct: 59  PTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPGRILDHLS 118

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           + ++ ++ +  LV+DEADRML+MGF   ++ I +  P  RQTLLFSAT    +++++++ 
Sbjct: 119 KDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFSATYPASIEQIAQSV 178

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            +N   I+V     T+ +I   F       ++  AL   LL  Q T  + ++FCN K+ V
Sbjct: 179 TRNALMIKVEATHDTS-SIRQYFYKVEGSAARDEALETLLLHHQPT--SSVVFCNTKREV 235

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            N+  +L + GFSV  +HG+++QR R + L  F   +I ++VA+D+AARGLD+ ++  VF
Sbjct: 236 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 295

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           N+D+    E ++HRIGRTGRAG  G AF+  +  +   +  I++ ++  ++
Sbjct: 296 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIAIE 346


>gi|326911793|ref|XP_003202240.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
           [Meleagris gallopavo]
          Length = 447

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 134/359 (37%), Positives = 215/359 (59%), Gaps = 8/359 (2%)

Query: 12  VVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV 70
           V+C   D  G+  PT IQ++ IP+ LQ  D+ G+A+TG+GKT +F LP+L  L     R+
Sbjct: 29  VLCEACDQLGWKIPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQALLDAPQRL 88

Query: 71  RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130
                L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +   ++I TP
Sbjct: 89  F---ALVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPHIIIATP 145

Query: 131 GRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           GR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T LFSATMT 
Sbjct: 146 GRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTK 205

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
           ++QK+    L+NP +  V++   T E ++  ++   +++  K + L  +L ++    + +
Sbjct: 206 QVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDSYLVYIL-NELAGNSFM 262

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           +FC+   N       L   GF+   +HG + Q  R+  L+ FK     +++A+D+A+RGL
Sbjct: 263 VFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLATDVASRGL 322

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           DIP V  V NFD+P  +++YIHR+GRT RAGR GK+ T V + D++    IE LI KK+
Sbjct: 323 DIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLIGKKL 381


>gi|6735368|emb|CAB68189.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
          Length = 603

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 141/385 (36%), Positives = 214/385 (55%), Gaps = 22/385 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD+ L   +   +    YV+PTP+Q   IP++L   D+   AQTG+GKTA+F  P+++ 
Sbjct: 153 FADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISG 212

Query: 63  LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           + K +       +R   P  +IL PTRELA Q+ D  +K+     + V +  GG P   Q
Sbjct: 213 IMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQ 272

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++LERG D+L+ TPGR+ D   R ++ M  I  L +DEADRMLDMGF P I+ I   + 
Sbjct: 273 LRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMD 332

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQT+LFSAT   ++Q+++ +F+ N   + V    S+ + I       + Q S K
Sbjct: 333 MPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQ--RVEFVQESDK 390

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
            + L  LL +Q   ++       K+    L + L    F   +IHG+  Q+ R   L +F
Sbjct: 391 RSHLMDLLHAQRETQD-----KTKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSF 445

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G A     +
Sbjct: 446 KTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNE 505

Query: 352 EDIKHIDAIEKLIEKK----VDWLN 372
            + +   ++ +L+++      +WL 
Sbjct: 506 NNAQLARSLAELMQEANQEVPEWLT 530


>gi|24585582|ref|NP_610090.1| CG9253 [Drosophila melanogaster]
 gi|7298752|gb|AAF53963.1| CG9253 [Drosophila melanogaster]
          Length = 507

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 217/369 (58%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLGL+  +  A  +  +  P+ IQ + IP+ LQ  DV G+A+TG+GKT +F LP+L
Sbjct: 61  LTWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 120

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      L+L PTRELA Q+ + FE  G    +   +++GG+   AQ  +L 
Sbjct: 121 HALLENPQRYF---ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 177

Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGR++DH    K   +  I+ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 178 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 237

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L++P ++EV+    T E ++  ++    +Y  K   L  +L
Sbjct: 238 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKY--KDVYLVHIL 295

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK     ++
Sbjct: 296 -NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 354

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA TLV++ DI+    
Sbjct: 355 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQR 414

Query: 360 IEKLIEKKV 368
           IE L+ K++
Sbjct: 415 IEHLLGKQL 423


>gi|283786193|ref|YP_003366058.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
 gi|282949647|emb|CBG89266.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
          Length = 444

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 140/354 (39%), Positives = 207/354 (58%), Gaps = 6/354 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  
Sbjct: 6   FSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT+
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTM 185

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALLQQLL 239
           LFSAT+  E ++  +E  L++P  +EV+   ST E  + H +      Y  K  LL+ LL
Sbjct: 186 LFSATLEGEAIKDFAERLLEDP--VEVSASPSTRERKKIHQWYYRADNYEHKFELLKHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  +  I+F  +++ V  L   L   G S C + G + Q  R + +    +G + ++
Sbjct: 244 KQDDATRT-IVFVRKRERVHELAEQLRLAGISNCYLEGEMAQIKRNEGIKRLTDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+AARG+DIPDV HV NFD+P   + Y+HRIGRTGRAGR G A +LV   D
Sbjct: 303 VATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHD 356


>gi|260912300|ref|ZP_05918851.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260633601|gb|EEX51740.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 447

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 138/378 (36%), Positives = 220/378 (58%), Gaps = 18/378 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  +   TPIQ   IP +L+  D+ G+AQTGTGKTA+++LP++
Sbjct: 1   MTFEELDLNDNVLDALYDMRFETCTPIQEHCIPQILEGKDILGVAQTGTGKTAAYLLPIM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI----GGIPFEAQN 116
           ++L+ G         +I+ PTRELA Q+    + +G   +   +L I     G  ++ + 
Sbjct: 61  SMLDDGGFPHDAINCIIMSPTRELAQQIDQAMQGFGYYLDSVSSLAIYGGNDGNRYDQEI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  GAD++I TPGR + H   G + ++ +   V+DEADRMLDMGF   I  I   +P 
Sbjct: 121 KSLRLGADIIIATPGRFISHIQLGNVDLSKVSFFVLDEADRMLDMGFSEDIMTIAKQLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T QT++FSATM  +++++++  L+NP  I++   S  AE I        AQ +  C   Q
Sbjct: 181 TCQTIMFSATMPPKIEQLAKTLLKNPVEIKLAV-SKPAEKI--------AQKAYLCYEPQ 231

Query: 237 QLLQSQDTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
           +L   QD  K G     IIF  +K+ V  +  +L +   +   +H ++ Q  R +++  F
Sbjct: 232 KLKVLQDIFKAGSLNRVIIFSGKKQKVKEINRALVRMKVNSDEMHSDLSQEERDRVMFKF 291

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   ++VA+D+ +RG+DI D+  V N+DVP+  E+Y+HRIGRT RA R G A TL++ 
Sbjct: 292 KSGATDVLVATDILSRGIDIDDITMVINYDVPHDVEDYVHRIGRTARAERDGVAITLISD 351

Query: 352 EDIKHIDAIEKLIEKKVD 369
           +D+ +   IE+ +EK ++
Sbjct: 352 QDVYYFQQIERFLEKDIE 369


>gi|242787406|ref|XP_002481000.1| RNA helicase (Dbp), putative [Talaromyces stipitatus ATCC 10500]
 gi|218721147|gb|EED20566.1| RNA helicase (Dbp), putative [Talaromyces stipitatus ATCC 10500]
          Length = 543

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 208/373 (55%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ KPT IQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 118 FDEAGFPNYVLSEVKAQGFAKPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 177

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  LIL PTRELA Q+     K+G++  +    + GG+P   Q 
Sbjct: 178 INAQPLLSPGDG----PIVLILAPTRELAVQIQTEISKFGRSSRIRNTCVYGGVPKGPQI 233

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 234 RDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 293

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT ++SAT   E+++++ +FL +  ++ + +   +A       V   + + K+  +++
Sbjct: 294 DRQTCMWSATWPKEVRQLASDFLNDFIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 353

Query: 237 QLLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L +  D  KN  +IF   K+   ++   L + G+   +IHG+  Q  R  +L  FK G 
Sbjct: 354 HLEKIMDDRKNKCLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLQEFKNGK 413

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A T    ++ K
Sbjct: 414 SPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSK 473

Query: 356 HI-DAIEKLIEKK 367
              D +  L E K
Sbjct: 474 QARDLVTILSEAK 486


>gi|152975569|ref|YP_001375086.1| DEAD/DEAH box helicase domain-containing protein [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152024321|gb|ABS22091.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 434

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 140/363 (38%), Positives = 225/363 (61%), Gaps = 7/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG+S      + + G  + TPIQ K IP+++   DV G A+TGTGKT +FVLP+L  
Sbjct: 7   FLELGMSETFQHTLRENGIAEATPIQEKAIPVIMDGKDVIGQAKTGTGKTLAFVLPILEN 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLER 121
           ++   + ++    LI+ PTRELA Q+    +K      ++ V  + GG   E Q KKL+ 
Sbjct: 67  IDPNASDIQ---ALIVAPTRELALQITTEIKKMLVHKQDIHVLAIYGGQDVEQQMKKLKG 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  R  ++++N+ ++V+DEAD+ML  GF+  I++I    P  +QT+
Sbjct: 124 NTHIVVATPGRLLDHLRRETIVLSNVSMVVLDEADQMLHFGFLYDIEHILEETPENKQTM 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  +++K+++ +++ P+ I++ +   T E I+   + T    +K+ AL   + + 
Sbjct: 184 LFSATMPKDIKKLAKRYMKEPQVIQIQSAEVTVENIKQRVIET-TDRAKQDALRYVMERD 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q  +   +IFC  K+ V  L  +L+  G++   +HG++ Q  R +++ NF+E  IQ ++A
Sbjct: 243 QPFL--AVIFCRTKRRVTKLFTALKGYGYNCDELHGDLSQAKRERVMKNFREAKIQYLIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D  ++  IE
Sbjct: 301 TDVAARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGGTGLAITFVAPKDKMYLKEIE 360

Query: 362 KLI 364
           K I
Sbjct: 361 KYI 363


>gi|159465205|ref|XP_001690813.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158279499|gb|EDP05259.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 446

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 215/369 (58%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F  LG+  ++  A    G+  P+ IQ + IP +L   DV G+AQTG+GKT +F LP+L  
Sbjct: 19  FEKLGICTQLAEAAAGLGWKAPSHIQEQAIPHLLAGQDVIGLAQTGSGKTGAFSLPILQA 78

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++K +        LIL PTRELA Q+A+  E  G    +   +L+GGI   AQ   L +
Sbjct: 79  LMDKPQEHF----ALILSPTRELAIQIAEQVEALGSGIGVKSCVLVGGIDMMAQAIALAK 134

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              VL+ TPGR++DH +  K   +  ++ LV+DEAD++LDM F   I  I  ++P  R+T
Sbjct: 135 RPHVLVGTPGRVVDHLSNTKGFSLKQLKHLVLDEADKLLDMDFEQEIDQILKVIPRERRT 194

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT+++QK+    L  P +IEV    ST +T+   +V   A+Y K C L   +  
Sbjct: 195 QLFSATMTNKVQKLQRACLDKPVKIEVAHKYSTVDTLRQQYVFIPAKY-KDCYLAYVI-- 251

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++ +    +IF    ++   +   L   GF    IHG++ Q  R+  L+ FK G   ++V
Sbjct: 252 NELSGSTFMIFTRTCESTRRIALLLRNLGFGAVPIHGHMSQPKRLGALNKFKSGERNILV 311

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFDVP  +++Y+HR+GRT RAGR G++ T+V + D++    I
Sbjct: 312 ATDVASRGLDIPSVDVVINFDVPQNSKDYVHRVGRTARAGRSGRSVTIVTQYDVELFQKI 371

Query: 361 EKLIEKKVD 369
           E L   K++
Sbjct: 372 EHLTGVKME 380


>gi|288942044|ref|YP_003444284.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288897416|gb|ADC63252.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
           180]
          Length = 454

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 132/363 (36%), Positives = 207/363 (57%), Gaps = 3/363 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  L   ++  + + GY  PTP+Q + IPL +   D+   A TG+GKTA+F+LP++  
Sbjct: 5   FSEFLLPDALMRGLANEGYTTPTPVQAQVIPLAMDGVDLLVSAATGSGKTAAFLLPIMQR 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                      R LIL PTRELA Q+  +F + G    LT  ++ GG     Q   L + 
Sbjct: 65  FIDVPRHDGSTRALILVPTRELARQIHIHFMRLGSYTRLTSGVITGGESKAHQIATLRKN 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++L+ TPGR+L+    G+  + ++E LV+DEADRMLDMGF   +  I       RQ+LL
Sbjct: 125 PEILVATPGRLLEFLETGQANLRDLEFLVLDEADRMLDMGFADDVLAIIRYSRPERQSLL 184

Query: 183 FSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT+    L +++E  L++P+R++V+        I HC + +     K+  LL   L  
Sbjct: 185 FSATLEQRGLSQITERLLRDPQRVDVDPVRQQHPDIAHCMLLSDGLEHKQQQLL--WLLR 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +T +  +IF N ++  V L + L+ Q   V  +HG +DQR R +++     G +  ++A
Sbjct: 243 HETYEKALIFTNTREGAVALGNFLQGQQQRVAVLHGELDQRERNRVMGLLHSGRVNTLIA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+D+P V  VFNFD+P R ++Y+HR GRTGRAG  G A +LV   +   +++I 
Sbjct: 303 TDLAARGIDVPGVQRVFNFDLPRRGDDYLHRTGRTGRAGEAGVAISLVGPPEWNRMESIA 362

Query: 362 KLI 364
           + +
Sbjct: 363 RYL 365


>gi|255935375|ref|XP_002558714.1| Pc13g02750 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583334|emb|CAP91344.1| Pc13g02750 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 493

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 138/369 (37%), Positives = 215/369 (58%), Gaps = 10/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F +LGL   +  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTASFVLP+L  
Sbjct: 73  FKELGLIDSLCEACDKMGYKAPTPIQSESIPLALQGRDIIGLAETGSGKTASFVLPILQA 132

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++EK ++       L+L PTRELA Q++   E  G   N+    L+GG+    Q+  L +
Sbjct: 133 LMEKPQSFF----GLVLAPTRELAYQISLACESLGATINVRSTTLVGGMDMVPQSIALGK 188

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+LDH    K   + +++ LV+DEADR+LDM F P +  I  ++P  R+T
Sbjct: 189 KPHIIVATPGRLLDHLENTKGFSLRSLKFLVMDEADRLLDMDFGPILDKILKVLPRERRT 248

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQLL 239
            LFSAT++ +++ +    L NP R+ +++   +T ET++  ++     Y  K   L  LL
Sbjct: 249 FLFSATLSSKVESLQRASLSNPARVSISSSKYATVETLQQTYL--LRPYKHKDIYLVYLL 306

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ IIF         +   L   GF    +HG + Q +R+  L  F+  + +++
Sbjct: 307 H-EFIGQSVIIFMRTVHETQRVAFLLRGLGFGAIPLHGQMSQSARLGALGKFRSKSREIL 365

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V NFD+P  ++ YIHR+GRT RAG+ G A + V + D++    
Sbjct: 366 VATDVAARGLDIPSVDCVLNFDLPTDSKTYIHRVGRTARAGKSGTAISFVTQYDVEIWQR 425

Query: 360 IEKLIEKKV 368
           IE  + K++
Sbjct: 426 IEAAMGKEL 434


>gi|171691382|ref|XP_001910616.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945639|emb|CAP71752.1| unnamed protein product [Podospora anserina S mat+]
          Length = 490

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 145/376 (38%), Positives = 212/376 (56%), Gaps = 24/376 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DLG+   +  A    GY +PT IQ + IPL LQ  D+ GIA+TG+GKTA+F LP+L  
Sbjct: 64  FKDLGIVDSLCEACDRLGYKQPTAIQQEAIPLALQDRDIIGIAETGSGKTAAFALPILQA 123

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+K +        L+L PTRELAAQ+A +FE  G   NL  ALL+GG+    Q   L +
Sbjct: 124 LLDKPQPLF----ALVLAPTRELAAQIAQSFEALGSLINLRCALLLGGLDMVQQAIALGK 179

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR+LDH  + K   + N+   V+DEADR+LDM F P ++ I   +P  R+T
Sbjct: 180 KPHVVVATPGRLLDHLEKTKGFSLRNLRYCVMDEADRLLDMDFGPILEKILKFLPRERRT 239

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAET-------IEHCFVATYAQYSKKC 232
            LFSATM+ +++ +    L++P ++ V+T    T  T       I H    TY  Y    
Sbjct: 240 FLFSATMSSKVESLQRASLRDPLKVNVSTSKYQTVSTLVSNYLFIPHIHKDTYFIY---- 295

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                 L ++   K  I+F         +   L   G     +HG + Q +R+  LS F+
Sbjct: 296 ------LCNEFAGKTMIVFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALSKFR 349

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT  ++VA+D+AARGLDIP+V  V N+D+P  ++ YIHR+GRT RAG+ G A ++V + 
Sbjct: 350 AGTRNILVATDVAARGLDIPNVDCVINYDLPQDSKTYIHRVGRTARAGKSGHALSIVTQY 409

Query: 353 DIKHIDAIEKLIEKKV 368
           D++    IE  +  K+
Sbjct: 410 DLEIWTRIEAALGTKL 425


>gi|21223535|ref|NP_629314.1| helicase [Streptomyces coelicolor A3(2)]
 gi|9714451|emb|CAC01367.1| putative helicase [Streptomyces coelicolor A3(2)]
          Length = 879

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 132/346 (38%), Positives = 205/346 (59%), Gaps = 12/346 (3%)

Query: 31  TIPLVLQRHDVCGIAQTGTGKTASFVLPML---TI---LEKGRAR----VRMPRTLILEP 80
           T+P+ L   DV G A+TGTGKT  F LP+L   T+   +E GRA        P+ L++ P
Sbjct: 2   TLPVALSGKDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRAAPESLTDAPQALVVVP 61

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TREL  QV ++    GK  N+ V  + GG  +E Q + L++G DV++ TPGR+LD   + 
Sbjct: 62  TRELCQQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKQGVDVIVGTPGRLLDLAGQN 121

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200
           KL + +I+ LV+DEAD MLD+GF+P ++ I +++P  RQT+LFSATM   +  ++  ++ 
Sbjct: 122 KLSLKHIKSLVLDEADEMLDLGFLPDVEKIINMLPARRQTMLFSATMPGAVIGLARRYMS 181

Query: 201 NPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
            P  I   +P     T+ +     Y A    K  ++ ++LQ+ D     ++FC  K+   
Sbjct: 182 QPTHISATSPDDEGATVANTKQFIYRAHNMDKPEMVARILQA-DGRGLAMVFCRTKRTAA 240

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
           +L   L+++GF+  A+HG++ Q +R + L  F+ G + ++V +D+AARG+D+  V HV N
Sbjct: 241 DLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVIN 300

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +  P   + Y+HRIGRTGRAG  G A TLV  +DI     I K ++
Sbjct: 301 YQSPEEEKTYLHRIGRTGRAGAKGTAITLVDWDDIPRWQLINKALD 346


>gi|226468232|emb|CAX69793.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Schistosoma japonicum]
          Length = 606

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 133/382 (34%), Positives = 214/382 (56%), Gaps = 34/382 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A++ ++ ++   +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 178 WAEMNVADELKDVIKKVGYPEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLNW 237

Query: 63  LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +++     R+      P  +I+ PTRELA Q+ +   K+G+   +    LIGG+  E Q 
Sbjct: 238 IQRLPKLERLEDTEQGPYAIIMAPTRELAQQIEEETVKFGRPLGIKTVSLIGGLSREDQA 297

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            KL  GA+++I TPGR+ D      +++N    +V+DEAD+M+DMGF P + NI + +P 
Sbjct: 298 LKLRMGAEIVIGTPGRLNDVLENRYMVLNQCTYIVLDEADKMIDMGFEPEVNNILTYLPV 357

Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           T                         RQT++F+ATM   +++++ ++L+ P  + + +  
Sbjct: 358 TNEKPDNEDAEDDSKLLSNFATKHKYRQTVMFTATMPPAVERLARSYLRRPAMVYIGSAG 417

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
              E +E   V   ++  K+  LL+ L    D       F NQKK    L   LEK G+S
Sbjct: 418 KPTERVEQ-IVYMVSEQEKRRKLLEILAAGLDP--TCYYFVNQKKGADVLAKGLEKLGYS 474

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
              +HG   Q  R   L++ K G  +++VA+D+A RG+DI DV  V N+D+    + Y+H
Sbjct: 475 AVVLHGGKGQEQREYALASLKSGQKEILVATDVAGRGIDIKDVSMVINYDMSKTIDEYVH 534

Query: 332 RIGRTGRAGRHGKAFTLVAKED 353
           RIGRTGRAG+ G A +L+ KED
Sbjct: 535 RIGRTGRAGKSGIAISLLTKED 556


>gi|224086197|ref|XP_002193200.1| PREDICTED: DEAD box polypeptide 42 protein [Taeniopygia guttata]
          Length = 923

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 139/395 (35%), Positives = 223/395 (56%), Gaps = 22/395 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQA 370

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRP 430

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +    V  +     K   L 
Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQ-IVEIFPSGPSKWNWLT 489

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + L    +  + ++F  +K N   L ++L+++  ++  +HG++DQ  R K++S FK+  I
Sbjct: 490 RRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGI 549

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED--- 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D   
Sbjct: 550 PILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNF 609

Query: 354 ----IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
               +++++   + + K++     DL+  NP   K
Sbjct: 610 AGDLVRNLEGANQHVSKELL----DLAMQNPWFRK 640


>gi|193785182|dbj|BAG54335.1| unnamed protein product [Homo sapiens]
          Length = 674

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 131/339 (38%), Positives = 205/339 (60%), Gaps = 11/339 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML------TILEKGRARVRMPR 74
           Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML        LE G      P 
Sbjct: 9   YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDG----PI 64

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            +I+ PTREL  Q+    +++GK YNL    + GG     Q K L+ GA++++CTPGR++
Sbjct: 65  AVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLI 124

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           DH  +    +  +  LV DEADRM DMGF   +++I S V   RQTLLFSAT   +++K+
Sbjct: 125 DHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKL 184

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           + + L +P R+         E +       ++  SK   L ++L++   +  + ++F  +
Sbjct: 185 ARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS-GSVLLFVTK 243

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++VA+D+AARGLDIP +
Sbjct: 244 KANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSI 303

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 304 KTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 342


>gi|167533855|ref|XP_001748606.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772847|gb|EDQ86493.1| predicted protein [Monosiga brevicollis MX1]
          Length = 698

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 140/385 (36%), Positives = 214/385 (55%), Gaps = 37/385 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + GL+P+++ A+   G+  PTPIQ   IP+ L   D+ G+A+TG+GKT +FVLP+L  
Sbjct: 275 WDEAGLNPEMLKAIQKLGFENPTPIQRAAIPIGLNNRDIIGVAETGSGKTLAFVLPLLNW 334

Query: 63  LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      VR       P  +IL PTR+LA Q+ D   K+ +   + +  +IGG   E Q+
Sbjct: 335 IISLPQLVREQDIDNGPYAVILAPTRDLAQQIEDEANKFARPLGVRLVSVIGGHSREDQS 394

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            KL +G +V+I TPGR++D  +   +++N    +V+DEADRMLDMGF P +Q I   +P 
Sbjct: 395 FKLNQGCEVVIATPGRLIDVLDNHYMVLNQCSYIVMDEADRMLDMGFEPEVQRILEYIPV 454

Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           +                         RQT+LF+ATM   +++++  +L+ P  + +    
Sbjct: 455 SNMKPDTDEAEDQHLLAENSRNKAKYRQTVLFTATMPTSVERLARTYLRRPATVNIGVAG 514

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGF 270
             A+ +E   V   ++  K+  L++ L    D+M+   IIF NQKK    L  SLEK G+
Sbjct: 515 RAADRVEQR-VLMLSEKQKRNELVKLL----DSMEPPVIIFVNQKKGADVLTKSLEKMGY 569

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
              A+HG   Q  R + LS  K+ T  ++VA+D+A RG+DI  +  V N+D+    E+Y 
Sbjct: 570 RASALHGGKSQDLRERALSQLKDKTKDILVATDVAGRGIDIKGISMVINYDMAKNIEDYT 629

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIK 355
           HRIGRTGRAG  G A T + +ED K
Sbjct: 630 HRIGRTGRAGSSGVAVTFLTEEDSK 654


>gi|311747002|ref|ZP_07720787.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Algoriphagus sp.
           PR1]
 gi|126578701|gb|EAZ82865.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Algoriphagus sp.
           PR1]
          Length = 418

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 216/368 (58%), Gaps = 12/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF+       +   +   G+ +PTPIQ K IP++L   D+   AQTGTGKTA+F+LP+L
Sbjct: 1   MDFSSFNFETSLQEGLDAMGFEQPTPIQEKAIPVILDNKDLIACAQTGTGKTAAFILPVL 60

Query: 61  TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQN 116
             + K G  ++    TL+L PTRELA Q+    + +     ++   + GG   I +E Q 
Sbjct: 61  NKISKSGSDKLN---TLVLAPTRELAIQIDQQIQGFSYFLGISSIPIYGGGDGIVWEQQK 117

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K LE GA++++ TPGR++     GK+ ++++E L++DEADRM+DMGF   I  I + +P 
Sbjct: 118 KALETGAEIVVATPGRLIALLAGGKMDLSSLEHLILDEADRMMDMGFSDDILKIVNYLPK 177

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSATM  ++++ S   L+NP+ I +    + A   +    A Y+ Y  +   L 
Sbjct: 178 ERQTILFSATMPSKIRQFSMKILKNPQEISIAIGKTAAGVTQ----AMYSVYDGQKEDLV 233

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + + SQ   +  IIF + K+ V  L   L K  F V A H +++Q  R KI+S FK  +I
Sbjct: 234 KNILSQKAYEAVIIFASTKEKVKGLYKKLRKD-FEVEAFHSDLEQIEREKIMSGFKNKSI 292

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++ +D+ +RG+D+  +  V NFD P+  E+Y+HR+GRT RA + G+A T V  +D   
Sbjct: 293 KILIGTDIISRGIDVVGIELVINFDTPSDPEDYVHRVGRTARADKEGEAITFVNPKDQYK 352

Query: 357 IDAIEKLI 364
              IEKLI
Sbjct: 353 FARIEKLI 360


>gi|21464402|gb|AAM52004.1| RE27528p [Drosophila melanogaster]
          Length = 507

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 217/369 (58%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLGL+  +  A  +  +  P+ IQ + IP+ LQ  DV G+A+TG+GKT +F LP+L
Sbjct: 61  LTWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 120

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      L+L PTRELA Q+ + FE  G    +   +++GG+   AQ  +L 
Sbjct: 121 HALLENPQRYF---ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 177

Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGR++DH    K   +  I+ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 178 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 237

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L++P ++EV+    T E ++  ++    +Y  K   L  +L
Sbjct: 238 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKY--KDVYLVHIL 295

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK     ++
Sbjct: 296 -NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 354

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA TLV++ DI+    
Sbjct: 355 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQR 414

Query: 360 IEKLIEKKV 368
           IE L+ K++
Sbjct: 415 IEHLLGKQL 423


>gi|197364704|ref|YP_002144341.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|226739549|sp|B5BIS9|RHLB_SALPK RecName: Full=ATP-dependent RNA helicase rhlB
 gi|197096181|emb|CAR61777.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 421

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 144/373 (38%), Positives = 212/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P+VV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   VP   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRVPPAA 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIESYIGHSI 379


>gi|167753303|ref|ZP_02425430.1| hypothetical protein ALIPUT_01576 [Alistipes putredinis DSM 17216]
 gi|167659234|gb|EDS03364.1| hypothetical protein ALIPUT_01576 [Alistipes putredinis DSM 17216]
          Length = 476

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 134/375 (35%), Positives = 228/375 (60%), Gaps = 7/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L  +V+  +    + + TP+Q +TIP++L   D+   AQTGTGKTA++ LP+L
Sbjct: 1   MRFDELDLEDEVLDGIDAMNFQEMTPVQEQTIPIILDGRDIIACAQTGTGKTAAYTLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
             L        + +++I+ PTRELA Q+   F+ +     ++ A++ GG     ++ Q +
Sbjct: 61  NRLLLEGNEKNVVKSVIIVPTRELAQQIDMQFQGFSYYMPVSTAVIYGGGDGRGWDQQKR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ GADV+I TPGR++ H    ++ +++++ L++DEADRMLDMGF   I  I S +P +
Sbjct: 121 GLQMGADVVIATPGRLISHLMNSRVDLSHVDYLILDEADRMLDMGFYDDIMQIVSYMPKS 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL+FSAT+  +++++++  L +P  + +   S   E IE      Y    +K  ++++
Sbjct: 181 RQTLMFSATLPPKIRQMAKQILNDPAEVNIAI-SKPNEAIEQGAYICYE--GQKLGIVRE 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  S  +    IIF + K+ V  L H+L++    V  +H ++DQ  R +++ +FK   ++
Sbjct: 238 MF-SWPSESKTIIFSSSKQKVKELAHTLKRMKLDVAPMHSDLDQEKREQVMLDFKNNKVR 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+G V N+DVP+  E+YIHRIGRT RA   G+A T V +E+    
Sbjct: 297 ILVATDIVARGIDIEDIGMVINYDVPHDPEDYIHRIGRTARASATGRAVTFVNEEEQGKF 356

Query: 358 DAIEKLIEKKVDWLN 372
             IE+ IE+++  L+
Sbjct: 357 HRIEEFIEREIPKLS 371


>gi|328870452|gb|EGG18826.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 507

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 145/393 (36%), Positives = 226/393 (57%), Gaps = 18/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+ P+++ A +  G+ KPT IQ ++IP  +   D+ G+AQTG+GKTA+F +P+L  
Sbjct: 84  FDQLGMHPQIIEACVRMGFKKPTEIQRESIPHAIAGRDIIGLAQTGSGKTAAFAIPILQQ 143

Query: 63  LEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L      ++ P+    LIL PTRELA Q++  FE  G    +   +L+GG+    Q   L
Sbjct: 144 L------LQSPQPLFALILSPTRELAFQISQQFEALGAVIGVKCGVLVGGMDVMQQAMVL 197

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            R   +++ TPGR++ H    K   +  ++ LV+DEADR+L M F   I  I  ++P  R
Sbjct: 198 ARKPHIIVGTPGRVMYHLENTKGFHLKALKFLVMDEADRLLSMDFEEEINKILKVIPKNR 257

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETI--EHCFVATYAQYSKKCALL 235
            T LFSATMT ++ K+ +  L NP +++V +T  ST +T+  ++CF+     Y  K   L
Sbjct: 258 NTYLFSATMTSKVAKLQKASLVNPIKVQVASTKYSTVDTLVQQYCFIP----YQHKDCYL 313

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +L ++ +  + I+F         L   L   G     I+GN+DQ  R+  L+ FK   
Sbjct: 314 TYIL-NELSGNSAIVFVATCAASNRLSVMLRNLGLGAIPINGNMDQTKRLASLNKFKSSV 372

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+D+AARGLDIP VG V N+D+P  ++ Y+HR+GRT RAG+ G+A TLV + D++
Sbjct: 373 KNILVATDVAARGLDIPSVGLVVNYDIPVNSKEYVHRVGRTARAGQSGRAITLVTQYDVE 432

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
               IE  + KK++    + SS+   LE ++ A
Sbjct: 433 VYQRIEFALSKKLEEFPSESSSVLVFLEAVNEA 465


>gi|291544767|emb|CBL17876.1| Superfamily II DNA and RNA helicases [Ruminococcus sp. 18P13]
          Length = 555

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 133/332 (40%), Positives = 205/332 (61%), Gaps = 6/332 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ + T IQ K+IPL++Q  D+ G + TGTGKTA+F +P +  + +     R  + LIL 
Sbjct: 2   GFTEMTEIQEKSIPLMMQGIDLIGRSNTGTGKTAAFGIPAVESISQ--EDPRSVQVLILC 59

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA Q  +  +K  +         + GG   + Q   L+RGA++++ TPGR++DH N
Sbjct: 60  PTRELAMQACEELKKLSRFMPWVRPCAVYGGASMDRQIGDLKRGANIVVGTPGRVMDHMN 119

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           R  L + N++ +++DEAD ML+MGF   I+ I S VP  RQT+LFSATM  E+  +++ F
Sbjct: 120 RRTLKLQNLKTVILDEADEMLNMGFREDIETILSGVPEERQTVLFSATMPPEIMAITKQF 179

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            ++P  I++     T +TIE  +  T     +K   L+ LL + +  K+ ++FCN K+ V
Sbjct: 180 QKDPTVIKIAAKHRTVDTIEQYYYET--AMGRKTDALRLLLLAYEP-KSAMVFCNTKRTV 236

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             L  +L  +G     +HG++ Q  R ++++ FK G I ++VA+D+AARG+D+  +  VF
Sbjct: 237 DELTEALCDKGIQAAGLHGDMKQMQRTQVMNAFKSGRIGVLVATDVAARGIDVNGIDLVF 296

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           N+D+P   E YIHRIGRTGRAG+ G A TLV+
Sbjct: 297 NYDLPQDNEYYIHRIGRTGRAGKSGTALTLVS 328


>gi|293394818|ref|ZP_06639108.1| ATP-dependent RNA helicase SrmB [Serratia odorifera DSM 4582]
 gi|291422569|gb|EFE95808.1| ATP-dependent RNA helicase SrmB [Serratia odorifera DSM 4582]
          Length = 440

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 156/437 (35%), Positives = 242/437 (55%), Gaps = 16/437 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP+L 
Sbjct: 5   NFSELDLDERLINALRDKGYDRPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPVLQ 64

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +   + +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ T GR+L +          +E L++DEADRMLDMGF   I+ I++   +  QT
Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRNQT 184

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+  E +++ +E  L+ P  +E +      + I   +         K ALL  LL
Sbjct: 185 LLFSATLEGEAIREFAERILKEPVEVEADPSRRERKKILQWYYRA-DDVKHKTALLVHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q  D  K+ +IF  +++ V  L   L + G + C + G + Q  R + +    +G + ++
Sbjct: 244 QQPDVQKS-VIFVRKRERVHELATWLREAGINTCYLEGEMVQAKRNEAVKRMMDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D  H+  
Sbjct: 303 VATDVAARGLDILDITHVFNFDMPRTADTYLHRIGRTGRAGRKGTAISLVEAHD--HL-- 358

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR---RKKNYSSQ 416
              L+ K   +LN  L +    ++++  +    + K+N  P K     R   ++KN    
Sbjct: 359 ---LLGKVGRYLNEPLKA--RVIDELRPSTKQPSEKSNGKPSKKVLAKRAESKEKNKEKA 413

Query: 417 KSHIPLKESEKISKLQQ 433
           K  +  ++++ + K +Q
Sbjct: 414 KVKVRHRDAKNVGKRRQ 430


>gi|330828193|ref|YP_004391145.1| ATP-dependent RNA helicase DbpA [Aeromonas veronii B565]
 gi|328803329|gb|AEB48528.1| ATP-dependent RNA helicase DbpA [Aeromonas veronii B565]
          Length = 459

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 153/458 (33%), Positives = 243/458 (53%), Gaps = 21/458 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ L LSP +   +   GY++ TPIQ +++PLVL   D+   A+TG+GKTA+F L +L 
Sbjct: 5   EFSSLNLSPALQENLTSLGYLQMTPIQAQSLPLVLDGKDLIAKAKTGSGKTAAFGLGLLA 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L   R  V+    L+L PTRELA QVA    +  +   N+ +  L GG P   Q+  L 
Sbjct: 65  KLNVNRLEVQ---ALVLCPTRELADQVAQEIRRLARALPNVKLVTLCGGTPTAPQSATLS 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA + + TPGRIL H  +G L ++ ++ LV+DEADRMLDMGF   I  + S  P  RQT
Sbjct: 122 FGAHIAVGTPGRILKHLEQGTLELSGLKTLVLDEADRMLDMGFGEDINRVISYAPERRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + + ++S    +NP  + V +    +   +  +     Q       L    Q
Sbjct: 182 LLFSATYPEGIAQMSRGVQRNPVEVSVESLHEGSAIEQKLYEVPAGQRLDALTWLLSHYQ 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++FCN K+   ++   L  +GFS  A++G+++QR R ++L  F  G+  ++V
Sbjct: 242 PSSC----VVFCNTKRACNDVADHLAAKGFSALALNGDLEQRERDQVLVRFANGSATILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++G V N+++    E ++HRIGRTGRAG+ G A +L    + + ++ I
Sbjct: 298 ATDVAARGLDIKELGAVINYELTYDPEVHVHRIGRTGRAGQQGLALSLYQPNEAQRVNFI 357

Query: 361 EKLIEK-----KVDWLNGDLSSLNPPLE--KIDIAQHNHARKNNPIPQKS-----TGFDR 408
           E+  +       +D +  D+  + P +    ID  +    R  + +   +      G D 
Sbjct: 358 EEYQQAPMPLGDLDSIGRDIKPIAPQMVTLSIDAGRKTKVRAGDILGALTGEGGIAGADV 417

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFR 446
            K   S Q S++ +K S   + L++ +QE       +R
Sbjct: 418 GKIQISEQYSYVAVKRSVASAALKR-LQEGKIKGRSYR 454


>gi|195475963|ref|XP_002090252.1| GE12898 [Drosophila yakuba]
 gi|194176353|gb|EDW89964.1| GE12898 [Drosophila yakuba]
          Length = 522

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 215/370 (58%), Gaps = 9/370 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLGL+  +  A  +  +  P+ IQ + IP+ LQ  DV G+A+TG+GKT +F LP+L
Sbjct: 68  LTWKDLGLNETLCQACDELKWRSPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 127

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      L+L PTRELA Q+ + FE  G    +   +++GG+   AQ  +L 
Sbjct: 128 HALLENPQRYF---ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 184

Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGR++DH    K   +  I+ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 185 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 244

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L++P ++EV+    T E ++  ++    +Y  K   L  +L
Sbjct: 245 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKY--KDVYLVHIL 302

Query: 240 QSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              D   N  +IFC+   N V     L   G +   +HG + Q  R+  L+ FK     +
Sbjct: 303 N--DLAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSI 360

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA TLV + DI+   
Sbjct: 361 LISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDIELYQ 420

Query: 359 AIEKLIEKKV 368
            IE L+ K++
Sbjct: 421 RIEHLLGKQL 430


>gi|326789718|ref|YP_004307539.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
 gi|326540482|gb|ADZ82341.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
           5427]
          Length = 592

 Score =  249 bits (637), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 219/371 (59%), Gaps = 9/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L +S  ++ A  D G+ + TPIQ K IP++LQ +D+   A TGTGKT +F +P +  
Sbjct: 8   FNQLEVSEDIIRAAHDMGFEETTPIQGKAIPIILQGNDIIAQAPTGTGKTCAFGIPAIES 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKLE 120
           ++    +V++   LIL PTREL  Q  +      K Y   +  L   GG   + Q   L+
Sbjct: 68  VDTTNEKVQV---LILCPTRELVIQTTEELSALAK-YKRGIRTLPIYGGQQIDRQIIALK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI+DH  RG L + +++++++DEAD ML+MGF   I  I   VP  RQ 
Sbjct: 124 KRPQIIVGTPGRIMDHLRRGTLKLEHLKMIILDEADEMLNMGFREDIDVILESVPEERQF 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+   +  ++  +  NP  + V     T  T++  ++    + S K  +L +L+ 
Sbjct: 184 VLFSATLAKAILDIANKYQNNPITVNVVHKELTVPTVKQYYLEV--RDSNKVEVLSRLID 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +  K  ++FCN K+ V +LC  L+ +G+S  ++HG++ Q  R  ++S F+ G I +++
Sbjct: 242 A-NNFKLSVVFCNTKRRVDDLCRDLQARGYSAESLHGDMKQLQRDNVMSRFRNGLIDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV  VFN+DVP+  E Y+HRIGRTGRA R G ++T  A +++  +  I
Sbjct: 301 ATDVAARGIDVDDVDAVFNYDVPSDEEYYVHRIGRTGRAQREGVSYTFAAGKELAKLRDI 360

Query: 361 EKLIEKKVDWL 371
           ++  + K+  +
Sbjct: 361 QRYTKSKIKLI 371


>gi|168043479|ref|XP_001774212.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674480|gb|EDQ60988.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 584

 Score =  249 bits (637), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 143/396 (36%), Positives = 217/396 (54%), Gaps = 22/396 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++ L   +   +    Y KPTP+Q   IP+ L   D+   AQTG+GKTA+F  P++  
Sbjct: 138 FAEIDLGAALNENIRRCKYTKPTPVQRHAIPISLNGRDLMACAQTGSGKTAAFCFPIIAG 197

Query: 63  LEK----GR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           + +    GR    R  +P  LIL PTREL +Q++D  +K+     + V +  GG P   Q
Sbjct: 198 IMRNTPPGRPRGGRKALPLALILSPTRELTSQISDEAKKFAYQTGIRVVVCYGGAPVHNQ 257

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++LERG D+L+ TPGR+ D   R ++ ++ +  L +DEADRMLDMGF P I+ I   + 
Sbjct: 258 LRELERGVDILVATPGRLSDLLERARVSLSMVRYLTLDEADRMLDMGFEPQIRRIVEQMD 317

Query: 176 FT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQT+LFSAT   E+Q+++ +FL N   + V    S+ E I       Y Q + K
Sbjct: 318 MPPAGERQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTELIVQ--RVEYVQDADK 375

Query: 232 CALLQQLLQSQDTMKN------GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN---IDQR 282
            ++L  L+ +Q  +         ++F   KK    L   L + GF    IHG+      +
Sbjct: 376 RSMLMDLIHAQSALAPPGQTSLTLVFVETKKGADALEDWLCRMGFPATTIHGDRKVFPTQ 435

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R   L +F+ G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ 
Sbjct: 436 EREHALRSFRTGVTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKS 495

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A     ++D     ++ +L+ +    + G L++ 
Sbjct: 496 GVATAFFNEKDQSLARSLTELMTESSQEVPGWLTNF 531


>gi|325103156|ref|YP_004272810.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324972004|gb|ADY50988.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 411

 Score =  249 bits (637), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 143/375 (38%), Positives = 220/375 (58%), Gaps = 11/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +    P++   +   G+ K TPIQ +TIPLVLQ  D+   AQTGTGKTAS++LP+L
Sbjct: 1   MNFEEFNFVPELQEGLDSMGFSKATPIQEQTIPLVLQNKDIIACAQTGTGKTASYLLPVL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQN 116
             I +K   ++    TLIL PTRELA Q+             T   + GG   + +E Q 
Sbjct: 61  NKIYQKQTEKIN---TLILVPTRELALQIDQQIMGLAYFTQATSIAVYGGGDGVDYEQQK 117

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  G ++++ TPGRI+ H   GK+  +++E L++DEADRMLDMGF   I  I S +P 
Sbjct: 118 RSLREGVNIIVATPGRIIAHLTSGKIKFDSLEHLILDEADRMLDMGFYDDIVRIISYLPQ 177

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSATM   ++ +++  L++P  + +   S  +E I    +A  A  ++K  LL 
Sbjct: 178 KRQNLLFSATMPPRIRGLAKKILKHPAEVNIAI-SKPSEGINQ--LAYMAFDNQKGRLLM 234

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +L+     K+ IIF ++K+ V ++   L K+G    A H +++Q  R +I++ FK G +
Sbjct: 235 SILKD-GGFKSIIIFASKKETVKSINSELNKKGIKSEAFHSDLEQHQREEIMNRFKGGQL 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++V +D+ +RG+D+  +  V N+DVP   E+YIHRIGRT RA   G A T +  +D   
Sbjct: 294 SVLVGTDVISRGIDVVGIDLVVNYDVPPDPEDYIHRIGRTARAEATGTAITFINDKDQNK 353

Query: 357 IDAIEKLIEKKVDWL 371
              IEKLIE++++ +
Sbjct: 354 FHRIEKLIEREIEKI 368


>gi|212636402|ref|YP_002312927.1| DEAD box helicase [Shewanella piezotolerans WP3]
 gi|212557886|gb|ACJ30340.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 446

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 135/378 (35%), Positives = 216/378 (57%), Gaps = 17/378 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F    L P ++ AV   GY   T +Q   +P+ +   D+   AQTGTGKTA+F LP+L
Sbjct: 1   MNFDAFDLHPHILDAVSKRGYKALTEVQCHVLPVAMLGQDIMACAQTGTGKTAAFALPLL 60

Query: 61  -TILEKGRARVRMP------------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
            T++ +   + ++             + L+L PTRELA QVADN + Y +      A + 
Sbjct: 61  NTLVGQALQQSKVAEEDTFNQYRSELKVLVLTPTRELAIQVADNIQAYAQCLPFKTAAVY 120

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q K ++ G D+L+ TPGR+ D   +  L +  +  LV+DEADRMLDMGF+  I
Sbjct: 121 GGANMNPQRKAVQAGVDILVATPGRLFDLIGQFGLDLGCVTHLVVDEADRMLDMGFVRDI 180

Query: 168 QNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           + +  LV    QTL FSAT ++E++ +++  L  P+ I+V T ++ ++  +  ++     
Sbjct: 181 ERVKRLVAVEHQTLFFSATYSEEVKALAQKMLVAPEWIDVTTAATASKIAQEVYL---VD 237

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             +K  LL +L+  ++  +  ++F + K++  +L   L+  G      HG+  Q SR + 
Sbjct: 238 KRRKAELLSELV-GRNNWQQVLVFVSSKESAEHLHSELKLDGVKSAVFHGDKTQGSRNRA 296

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L  FK G +++MVA+D+AARGLDI  +  V N ++P  AE+Y+HR+GRTGRAG  G+A +
Sbjct: 297 LEEFKNGKLRVMVATDVAARGLDIEALPLVINLELPFAAEDYVHRVGRTGRAGLEGRAIS 356

Query: 348 LVAKEDIKHIDAIEKLIE 365
            V+ +D   +  IE +IE
Sbjct: 357 FVSPQDKTMLSEIETIIE 374


>gi|254459373|ref|ZP_05072794.1| ATP-dependent RNA helicase RhlE [Campylobacterales bacterium GD 1]
 gi|207083986|gb|EDZ61277.1| ATP-dependent RNA helicase RhlE [Campylobacterales bacterium GD 1]
          Length = 412

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 135/375 (36%), Positives = 223/375 (59%), Gaps = 12/375 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS ++  A++   + +PTPIQ K IPLVL   DV   A+TG+GK+AS++LP+L
Sbjct: 1   MSFSSLKLSSQINKALVKHNFKEPTPIQEKVIPLVLDGRDVMAKAKTGSGKSASYILPIL 60

Query: 61  TILEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT--VALLIGGIPFEA 114
            +L+K    G+A++++   L+L PTREL  QVA  FE +G+       V  +IGG     
Sbjct: 61  ELLQKRRGEGKAKIKV---LVLTPTRELTLQVAQAFENFGEFMQTKPKVVSVIGGEGIGD 117

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   +++G D+L+ T GR LD  ++ ++ ++++E LV+DEAD+ML++GF   +  +   +
Sbjct: 118 QLYAIQQGCDILVATSGRFLDVLSKKQMNLSHLEFLVLDEADKMLNLGFAEELDLVLEAI 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT  +++  ++    Q+   + ++    T +TI    +        +  L
Sbjct: 178 PEKRQNLLFSATYPEKILNIASRITQDSVEVSIDEDVPTVDTIIQRVIEV--NRDNRGPL 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L+ L++S+  +K+ ++F   K+   N+     K GF+  + HG++ Q  R   L+ F++ 
Sbjct: 236 LRHLIKSE-KLKHILVFMANKRATDNIAEKFRKYGFTAESFHGDLHQEDRTYTLNEFRDK 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I ++ A+D+AARGLDI ++  V NFD+P    +YIHRIGRT RAG+ G A + ++ ED 
Sbjct: 295 KINILFATDIAARGLDIENIECVINFDLPRSPTDYIHRIGRTARAGKSGLAISFISFEDQ 354

Query: 355 KHIDAIEKLIEKKVD 369
            H   IEK  + K++
Sbjct: 355 AHFSVIEKKCKVKIE 369


>gi|145638668|ref|ZP_01794277.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
 gi|145272263|gb|EDK12171.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
          Length = 439

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 135/383 (35%), Positives = 213/383 (55%), Gaps = 6/383 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKT +F+LP L  
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEECDVLGSAPTGTGKTTAFLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++        
Sbjct: 66  LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QTL
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  EL    +E  L +P +++        + I   +    +    K  LL + ++
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++  + GI+F  ++++   L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 245 TEEVTR-GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381
           ++  E+  K   L G      PP
Sbjct: 364 KRYTEEILKARILAGLEPRTKPP 386


>gi|195492387|ref|XP_002093968.1| GE20460 [Drosophila yakuba]
 gi|194180069|gb|EDW93680.1| GE20460 [Drosophila yakuba]
          Length = 818

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 141/373 (37%), Positives = 213/373 (57%), Gaps = 12/373 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F + G    V+  +   G+ KPT IQ +  P+ L   D+ G+AQTG+GKT ++VLP +
Sbjct: 156 IEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIALSGRDLVGVAQTGSGKTLAYVLPAV 215

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA Q+     ++G N ++    + GG P   
Sbjct: 216 VHINNQPRLERGDG----PIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQ 271

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 272 QARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 331

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQ L++SAT   E+++++E FL N  ++ + + S +A       V    +  K   L
Sbjct: 332 RPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKL 391

Query: 235 LQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           ++ L   S +     IIF   KK V  +  ++ +QG+  CAIHG+  Q+ R  +LS+F+ 
Sbjct: 392 IKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRN 451

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    +
Sbjct: 452 GRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSN 511

Query: 354 I-KHIDAIEKLIE 365
             K  D I+ L E
Sbjct: 512 ANKANDLIQVLRE 524


>gi|194865632|ref|XP_001971526.1| GG15018 [Drosophila erecta]
 gi|190653309|gb|EDV50552.1| GG15018 [Drosophila erecta]
          Length = 824

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 141/373 (37%), Positives = 213/373 (57%), Gaps = 12/373 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F + G    V+  +   G+ KPT IQ +  P+ L   D+ G+AQTG+GKT ++VLP +
Sbjct: 157 IEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIALSGRDLVGVAQTGSGKTLAYVLPAV 216

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA Q+     ++G N ++    + GG P   
Sbjct: 217 VHINNQPRLERGDG----PIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQ 272

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 273 QARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 332

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQ L++SAT   E+++++E FL N  ++ + + S +A       V    +  K   L
Sbjct: 333 RPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKL 392

Query: 235 LQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           ++ L   S +     IIF   KK V  +  ++ +QG+  CAIHG+  Q+ R  +LS+F+ 
Sbjct: 393 IKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRN 452

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    +
Sbjct: 453 GRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSN 512

Query: 354 I-KHIDAIEKLIE 365
             K  D I+ L E
Sbjct: 513 ANKANDLIQVLRE 525


>gi|67459931|ref|NP_001019988.1| probable ATP-dependent RNA helicase DDX46 [Danio rerio]
 gi|82277867|sp|Q4TVV3|DDX46_DANRE RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46
 gi|66473312|gb|AAY46301.1| DEAD box protein 46 [Danio rerio]
          Length = 1018

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 148/442 (33%), Positives = 237/442 (53%), Gaps = 15/442 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +   G+S KV+ A+    Y KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 342 WVQCGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 401

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R       P  +I+ PTRELA Q+    +K+ K+  L V  + GG     Q  +L+
Sbjct: 402 ILDQRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGISEQIAELK 461

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +VIDEADRM DMGF P +  I   V   
Sbjct: 462 RGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPD 521

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSAT    ++ ++   L  P  ++V   S     +E   +    +  KK   L +
Sbjct: 522 RQTVMFSATFPRTMEALARRILSKPVEVQVGGRSVVCSDVEQHVIVI--EEEKKFLKLLE 579

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L       + IIF +++++   L   L K  +   ++HG IDQ  R  I+++FK G  +
Sbjct: 580 ILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACR 639

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + +   ++ 
Sbjct: 640 LLVATSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEGQARYS 699

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             I K +E     L+G  SS+   LE++        +    I + S+GF  +   +  + 
Sbjct: 700 GDILKALE-----LSG--SSVPAELEQLWTNFKEQQKAEGKIIKSSSGFSGKGFKF-DET 751

Query: 418 SHIPLKESEKISKLQQDIQEND 439
            H    E +K+ K    + ++D
Sbjct: 752 EHALANERKKLQKWALGLHDSD 773


>gi|297797047|ref|XP_002866408.1| hypothetical protein ARALYDRAFT_919338 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312243|gb|EFH42667.1| hypothetical protein ARALYDRAFT_919338 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 455

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 148/418 (35%), Positives = 232/418 (55%), Gaps = 18/418 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+  ++V A    G+  P+ IQ + +P  L+  DV G+AQTG+GKT +F +P+L  
Sbjct: 11  FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70

Query: 63  L---------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
           L         +KGR         +L PTRELA Q+A+ FE  G + +L  A+L+GGI   
Sbjct: 71  LLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRM 130

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
            Q   L +   V++ TPGR+ DH +  K   + +++ LV+DEADR+L+  F   +  I  
Sbjct: 131 QQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILE 190

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +P  R+T LFSATMT +++K+    L+NP +IE  +  ST +T++  +    A+Y K C
Sbjct: 191 EIPRERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKY-KDC 249

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L+  L +  ++    +IF         L   L   GF    I G + Q  R+  L+ FK
Sbjct: 250 YLVYILSEMPES--TSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFK 307

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++V +D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR G   +LV + 
Sbjct: 308 AGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQY 367

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           +++    IEKLI KK+     +   +   LE++       A+K + +  K +G  +R+
Sbjct: 368 ELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERV-----AEAKKLSAMNMKESGGRKRR 420


>gi|281204092|gb|EFA78288.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 443

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 142/368 (38%), Positives = 212/368 (57%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+ P++V A    G+  PT IQ K IP  L   D+ G+AQTG+GKTA+F +PML  
Sbjct: 15  FEKLGVDPQIVEACKKLGFKNPTEIQRKAIPEALAGKDIVGLAQTGSGKTAAFSIPMLQA 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L    A+      L+L PTRELA Q++D  E  G    +  A+L+GGI   +Q+  L + 
Sbjct: 75  L---LAKPSGLFGLVLAPTRELAVQISDQIEALGAVIGVKCAVLVGGIDTMSQSMALAKK 131

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++ TPGR++ H    K   +  ++  V+DEADR+L M F   I  I  ++P  R T 
Sbjct: 132 PHIIVGTPGRVVYHLENTKGFNLKTLKYFVMDEADRLLGMDFEEEINTILKVIPKDRNTF 191

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT ++ K+    L +P +I+V T  ST +T++  ++  +  Y  K   L  +L +
Sbjct: 192 LFSATMTSKVAKLQRASLNDPVKIQVATKYSTVDTLQQEYI--FIPYKHKECYLTYIL-N 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + IIF +       L   L    F    I+G +DQ  R+  L+ FK  T+ ++VA
Sbjct: 249 ELAGNSVIIFTSTCAASTKLAIMLRNLSFKAIPINGQMDQSKRLSSLNKFKAQTMDILVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP V  V N+DVP  ++ Y+HR+GRT RAGR G+A TLV + D++    IE
Sbjct: 309 TDVAARGLDIPSVDLVINYDVPVSSKEYMHRVGRTARAGRTGRAVTLVTQYDVEIYLRIE 368

Query: 362 KLIEKKVD 369
             +E+K++
Sbjct: 369 HALEQKLE 376


>gi|73965189|ref|XP_861178.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           isoform 2 [Canis familiaris]
          Length = 432

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 131/339 (38%), Positives = 205/339 (60%), Gaps = 11/339 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRARVRMPR 74
           Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML        LE G      P 
Sbjct: 9   YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDG----PI 64

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            +I+ PTREL  Q+    +++GK YNL    + GG     Q K L+ GA++++CTPGR++
Sbjct: 65  AVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLI 124

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           DH  +    +  +  LV DEADRM DMGF   +++I S V   RQTLLFSAT   +++K+
Sbjct: 125 DHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKL 184

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           + + L +P R+         E +       ++  SK   L ++L++   +  + ++F  +
Sbjct: 185 ARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS-GSVLLFVTK 243

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++VA+D+AARGLDIP +
Sbjct: 244 KANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSI 303

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 304 KTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 342


>gi|296824198|ref|XP_002850600.1| ATP-dependent rRNA helicase RRP3 [Arthroderma otae CBS 113480]
 gi|238838154|gb|EEQ27816.1| ATP-dependent rRNA helicase RRP3 [Arthroderma otae CBS 113480]
          Length = 474

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 219/369 (59%), Gaps = 10/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DLG+   +  A     Y  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 51  FKDLGIIDSLCDACTSLRYKAPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQA 110

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++EK +        L+L PTRELA Q+++ FE  G   ++  A+++GG+   +Q+  L +
Sbjct: 111 LMEKPQPYF----GLVLAPTRELAVQISEAFEALGSLISVRCAVIVGGMDMISQSISLGK 166

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+LDH    K   + N++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 167 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRT 226

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LFSAT++ +++ +    L NP R+ +++    T  T+   ++    +Y K   L+  L 
Sbjct: 227 YLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKY-KDVYLVHIL- 284

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   ++ IIF         L   L   GF    +HG + Q +R+  L  F+ G+  ++
Sbjct: 285 -NEFPGQSTIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRNIL 343

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V NFD+P+ ++ YIHR+GRT RAGR G+A ++V + +++    
Sbjct: 344 VATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGRSGRAISIVTQYEVEIWQR 403

Query: 360 IEKLIEKKV 368
           IE  + K++
Sbjct: 404 IEVALGKQL 412


>gi|119945261|ref|YP_942941.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119863865|gb|ABM03342.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 441

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 144/375 (38%), Positives = 218/375 (58%), Gaps = 21/375 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
           +F +LGL   ++  + +  Y +PTPIQ K IP VL   D+   A TG+GKTA+F LP+L 
Sbjct: 17  NFTELGLISPLLSRLTELEYQQPTPIQAKAIPSVLAGRDLIAGANTGSGKTAAFALPLLQ 76

Query: 61  ----------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIG 108
                     T+  K R    +   LIL PTRELA QVAD+ + Y  ++N  +    + G
Sbjct: 77  QFGQHLPINKTLSSKNREGNYVA-GLILVPTRELAKQVADSIKSYAAHFNGAIKTVAVFG 135

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G+    Q   L  G D+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   + 
Sbjct: 136 GVSANTQMLALRGGTDILVATPGRLLDLISSNAIKLDRVKTLVLDEADRMLSLGFTDELS 195

Query: 169 NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQ 227
            + +L+P ++Q LLFSAT  +++Q +++  L +P  +E+   SS A T ++  F     Q
Sbjct: 196 ALLALLPSSKQILLFSATFPEQVQALTQELLNDP--VEIQLQSSDASTLVQRVFTVNKGQ 253

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
              K ALL  L++ Q   +  +IF N K +  +L   L K+G S    HG+  Q +R ++
Sbjct: 254 ---KTALLAHLIK-QHQWQQALIFVNAKNSCNHLAEKLSKRGISAEVFHGDKGQGARSRV 309

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L  FK G I +++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G A +
Sbjct: 310 LDAFKAGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALS 369

Query: 348 LVAKEDIKHIDAIEK 362
           L+  +D+ H + IEK
Sbjct: 370 LIDHDDLHHFNVIEK 384


>gi|312375100|gb|EFR22532.1| hypothetical protein AND_15065 [Anopheles darlingi]
          Length = 821

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 136/379 (35%), Positives = 210/379 (55%), Gaps = 41/379 (10%)

Query: 10  PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI------ 62
           PK +  ++D  GY  PTPIQ + IP+ LQ  D+ GIA+TG+GKT +F++P+LT       
Sbjct: 401 PKEILEIIDKVGYKDPTPIQRQAIPIGLQNRDIIGIAETGSGKTLAFLIPLLTWIQSLPK 460

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E+     + P  +IL PTRELA Q+ +  +K+G    +   +++GG+  E Q  +L  G
Sbjct: 461 IERQETADQGPYAIILAPTRELAQQIEEETQKFGTPLGIRTVVVVGGLSREEQGFRLRLG 520

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177
            +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P T     
Sbjct: 521 CEIVIATPGRLIDVLENRYLVLNQCTYIVMDEADRMIDMGFEPDVQKILEYMPVTNLKPD 580

Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNT---PSSTA 214
                               RQT++F+ATM   +++++  +L+ P  + + +   P+   
Sbjct: 581 TEEAEDASKLMENFNTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSIGKPTERT 640

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           E I H       +  K+  L++ L  S+      IIF NQKK    L   LEK G++ C 
Sbjct: 641 EQIIHIM----GENDKRKKLMEIL--SRGVEPPCIIFVNQKKGADVLAKGLEKLGYNACT 694

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG   Q  R   L++ K G+  ++VA+D+A RG+DI DV  V N+D+    E+Y HRIG
Sbjct: 695 LHGGKGQEQREYALASLKNGSKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTHRIG 754

Query: 335 RTGRAGRHGKAFTLVAKED 353
           RTGRAG+ G A +   K+D
Sbjct: 755 RTGRAGKTGCAISFCTKDD 773


>gi|114669836|ref|XP_001147439.1| PREDICTED: DEAD box polypeptide 42 protein isoform 2 [Pan
           troglodytes]
 gi|114669838|ref|XP_001147515.1| PREDICTED: DEAD box polypeptide 42 protein isoform 3 [Pan
           troglodytes]
          Length = 674

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 131/339 (38%), Positives = 205/339 (60%), Gaps = 11/339 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML------TILEKGRARVRMPR 74
           Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML        LE G      P 
Sbjct: 9   YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDG----PI 64

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            +I+ PTREL  Q+    +++GK YNL    + GG     Q K L+ GA++++CTPGR++
Sbjct: 65  AVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLI 124

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           DH  +    +  +  LV DEADRM DMGF   +++I S V   RQTLLFSAT   +++K+
Sbjct: 125 DHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKL 184

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           + + L +P R+         E +       ++  SK   L ++L++   +  + ++F  +
Sbjct: 185 ARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS-GSVLLFVTK 243

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++VA+D+AARGLDIP +
Sbjct: 244 KANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSI 303

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             V N+DV    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 304 KTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 342


>gi|88860256|ref|ZP_01134894.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2]
 gi|88817454|gb|EAR27271.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2]
          Length = 408

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 135/370 (36%), Positives = 209/370 (56%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADL L  K++ A+  AGY  PT IQ   IP  +   D+   A TGTGKTA+F+LP +
Sbjct: 1   MQFADLDLDKKILNAIDKAGYKTPTSIQQLAIPEAMAGRDILASAPTGTGKTAAFLLPSI 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R      R LI+ PTRELA Q+ +    +  N +L + ++ GGI + +     
Sbjct: 61  QYLLDFPRRDPGFARVLIMTPTRELAYQIHEQCVLFAANTHLKIGVVTGGINYGSHKDIF 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+  D+LI TPGR++D+    +    N+EIL++DEADRMLDMGF   +  I       RQ
Sbjct: 121 EKNNDILIATPGRLMDYMKTEEFHAENVEILILDEADRMLDMGFRSEMMKICDEATNRRQ 180

Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             LFSAT+  D +++ ++  L +P  +E  +       I   +V      + K  LL+ +
Sbjct: 181 CFLFSATLEGDSVERFADTILNDPALLEAESSRKEQGKILQ-WVHLADSRNHKLDLLEAI 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+++D M   I+F   ++ +  L   L  +      + G + Q  RM  ++NF+ G   +
Sbjct: 240 LKAED-MSKAIVFVKTREKLEELVGLLVARDIKTAWLRGEMPQDKRMAAMANFQSGRANI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+ HV N+D+P  A+ Y+HRIGRTGRAG+ G A +LV   D+  + 
Sbjct: 299 LVATDVAARGIDVTDISHVINYDMPRTADIYVHRIGRTGRAGKKGVAISLVEAHDVGILK 358

Query: 359 AIEKLIEKKV 368
            IE+  E+ +
Sbjct: 359 KIERYTEQNL 368


>gi|121595996|ref|YP_987892.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
           JS42]
 gi|120608076|gb|ABM43816.1| ATP-dependent RNA helicase DbpA [Acidovorax sp. JS42]
          Length = 469

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 143/392 (36%), Positives = 219/392 (55%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LSP+++  +   GY + TPIQ  ++P  LQ  D+   A TG+GKTA+F L M+  
Sbjct: 16  FSSLPLSPEMLANLQQLGYAQMTPIQAASLPFSLQGRDLIAQASTGSGKTAAFGLAMVDR 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L     R    + L+L PTRELA QVA    +  +   N+ V  + GG+P   Q   LE 
Sbjct: 76  LNP---RWFAVQGLVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRGQIASLEN 132

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++D   RGKL + N++ LV+DEADRMLDMGF+  I+ +    P  RQTL
Sbjct: 133 GAHIVVGTPGRVMDLMERGKLDIANLKTLVLDEADRMLDMGFLADIETVVRQCPAERQTL 192

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D +  +++ F++ P+ ++V       +  +  +        +K  ++ ++L +
Sbjct: 193 LFSATYPDGIAGLAQRFMRAPQMVKVAAQHGAGKIAQRWY---EVDAREKVDVVARML-A 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   N+  +L+ QGFS  A+ G ++QR R ++L  F   +  ++VA
Sbjct: 249 HFRPASSIAFCNTKQQCRNVVTALQSQGFSALALFGELEQRERDEVLVQFANKSCSVLVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI D+  V N DV    E +IHRIGRTGR    G A  LV+ +++  +  IE
Sbjct: 309 TDVAARGIDIADLSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLVSMDEMGSVGRIE 368

Query: 362 KLIEKKVDWLNGDL------SSLNPPLEKIDI 387
            L  +  ++   D         L PP+  I I
Sbjct: 369 LLQGRACEFFPVDELTPTAGGELRPPMCTIQI 400


>gi|291230627|ref|XP_002735268.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47-like
           [Saccoglossus kowalevskii]
          Length = 446

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 143/394 (36%), Positives = 232/394 (58%), Gaps = 10/394 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F  LGL   V+C   +   + +PT IQ ++IPL L+  DV G+A+TG+GKT +F LP+L 
Sbjct: 25  FKSLGLV-DVLCETCEQLKWKEPTKIQRESIPLALEGKDVIGLAETGSGKTGAFALPILQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     LIL PTRELA Q+++ FE  G    +  A+++GGI   +Q  +L +
Sbjct: 84  DLLEHPQRLF---ALILTPTRELAFQISEQFEALGSAIGIKCAVVVGGIDMMSQALQLAK 140

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR++DH    K   + +++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 141 KPHVVVATPGRLVDHLENTKGFNLRSVKYLVMDEADRILNMDFEIELDKILKVIPRERRT 200

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            L+SATMT ++ K+    L+NP ++EVNT   T E +   ++   ++Y K   L+  L  
Sbjct: 201 YLYSATMTKKVAKLQRASLKNPVKVEVNTKYQTVEKLLQYYLFIPSKY-KDVYLVYIL-- 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + ++FC+   N   +   L   G +   +HG + Q  R+ +L+ FK     +++
Sbjct: 258 NELAGNSFMVFCSTCNNTQRVALMLRNLGLTAVPLHGQMSQNKRLGMLNKFKGKDRSILI 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAG+ GKA T V + D++    I
Sbjct: 318 ATDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGKSGKAITFVTQYDVELYQRI 377

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           E+LI K++     +   +   +E++  AQ  +AR
Sbjct: 378 EQLISKQLPLYPSEEEDVMMLVERVTEAQR-YAR 410


>gi|242002440|ref|XP_002435863.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215499199|gb|EEC08693.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 494

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 149/387 (38%), Positives = 221/387 (57%), Gaps = 20/387 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +  L+  +   +  A Y  PTP+Q   IP++L + D+   AQTG+GKTA+F++P+L  
Sbjct: 86  FDECSLTEIIRVNIELAHYTCPTPVQKHAIPIILAKRDLMACAQTGSGKTAAFLVPILNQ 145

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           + E G  + + P  LIL PTRELA Q+ +   K+     +   ++ GG     Q K L+R
Sbjct: 146 VFEDGPPKNQYPLALILSPTRELACQIYEEACKFAYRSRVRPCVVYGGADPMQQMKDLDR 205

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---SLVPF-T 177
           G  +L+ TPGR++D   RGK+ +  +  LV+DEADRMLDMGF P I+ I    ++ P   
Sbjct: 206 GCHLLVATPGRLVDMMERGKVSLELVRYLVLDEADRMLDMGFEPQIRRIVLEDNMPPVGQ 265

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL+FSAT   ++Q+++  FL N   + V    ST+E I    V  + +   K + L  
Sbjct: 266 RQTLMFSATFPKKVQELARKFLDNYIFLAVGRVGSTSENITQKVV--WVEEHDKRSFLLD 323

Query: 238 LLQ-------SQDTMKNGII--FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           LL        SQ  + + +   F   KK   +L H L K+G+ V +IHG+  QR R   L
Sbjct: 324 LLNAAGLRTGSQAALSDSLTLTFVETKKGADSLEHFLMKEGYPVTSIHGDRSQREREDAL 383

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +F++G   ++VA+ +AARGLDIP+V HV NFD+P+  E Y+HRIGRTGR G  G A + 
Sbjct: 384 WSFRKGHTPILVATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 443

Query: 349 VAKEDIK-HIDAIEKLIEKKV---DWL 371
             +++    +D +E + E K    DWL
Sbjct: 444 FNEKNRNMALDLVELITETKQELPDWL 470


>gi|50554139|ref|XP_504478.1| YALI0E27715p [Yarrowia lipolytica]
 gi|74659776|sp|Q6C4D4|DBP2_YARLI RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49650347|emb|CAG80081.1| YALI0E27715p [Yarrowia lipolytica]
          Length = 552

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 135/370 (36%), Positives = 211/370 (57%), Gaps = 27/370 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F + G  P V+  V   G+ KPT IQ +  P+ L   DV GIA TG+GKT S+ LP + 
Sbjct: 117 NFDEAGFPPYVLKEVKQQGFEKPTAIQCQGWPMALTGRDVIGIASTGSGKTLSYCLPAIV 176

Query: 62  ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                 +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q
Sbjct: 177 HINAQPMLSHGDG----PIVLVLAPTRELAVQIQQECSKFGKSSKIRNTCVYGGVPRGQQ 232

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L RG +++I TPGR+LD    GK  +  +  LV+DEADRMLDMGF P I+ I   + 
Sbjct: 233 IRDLARGVEIVIATPGRLLDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 292

Query: 176 FTRQTLLFSATMTDELQKVSENFLQ-----NPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
             RQTL++SAT   E+Q+++ ++L+     N   +E++   +  + +E C      +Y K
Sbjct: 293 PDRQTLMWSATWPKEVQRLAHDYLKDQIQVNIGSLELSASHNITQVVEVC-----TEYEK 347

Query: 231 KCALLQQLLQSQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           +  L++ L   +  M+N     +IF   K+   ++   L + G+   AIHG+  Q+ R  
Sbjct: 348 RDRLVKHL---ETVMENKESKCLIFTGTKRVADDITKFLRQDGWPALAIHGDKQQQERDW 404

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
           +L+ F++G   +MVA+D+A+RG+D+  +  V N+D P+ +E+Y+HRIGRTGRAG  G A+
Sbjct: 405 VLNEFRQGKSPIMVATDVASRGIDVKGINFVINYDYPSNSEDYVHRIGRTGRAGTKGTAY 464

Query: 347 TLVAKEDIKH 356
           T   +++ K 
Sbjct: 465 TYFTEDNRKQ 474


>gi|42521938|ref|NP_967318.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39574468|emb|CAE77972.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 473

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 140/372 (37%), Positives = 218/372 (58%), Gaps = 13/372 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L+P ++ A+      KPTP+Q + IP  L   D+  IAQTG+GKT +F L +LT 
Sbjct: 35  FQEMNLAPVLLPALTKMKISKPTPVQSQAIPASLDGSDIIAIAQTGSGKTLAFALSLLTT 94

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K        R LIL P+RE+A Q+   F +      ++V L IGG     Q  +L++ 
Sbjct: 95  LQKKPE----ARGLILVPSREMAQQIYKVFLELCAEMPVSVCLAIGGTTGSKQANQLKKN 150

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++I TPGR+ DH +  KLL+ N+E++V+DEADRMLDMGF P ++ I S +   RQT++
Sbjct: 151 PRLIIATPGRMNDHLSGNKLLLQNVEVIVLDEADRMLDMGFAPQLRTIQSTLRGPRQTMM 210

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSA+    ++ +++ F++ P  + V +  + A          +   S K     +LL   
Sbjct: 211 FSASFGSNVESIAQLFMK-PDVVMVRSEKAEAPVESLKQKVLFLDRSMKN---DRLLDEL 266

Query: 243 DTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  + G+I F   ++N   + + L++ GFS   IHG + Q  R +++  F+EG I+++VA
Sbjct: 267 NATRGGVIVFTGNQENCEAVGNYLKEYGFSTDLIHGGLSQGQRNRVVRGFREGEIRIVVA 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARGLD+P V HV NFD+P ++E+++HRIGRT RAGR G+A T V   D +    I+
Sbjct: 327 TDLLARGLDVPHVDHVVNFDLPFQSEDFLHRIGRTARAGRGGEAITFVTPSDTRMYAKIK 386

Query: 362 KLI----EKKVD 369
             +    E KVD
Sbjct: 387 GYLQGAQEIKVD 398


>gi|260774211|ref|ZP_05883126.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260611172|gb|EEX36376.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 442

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 143/418 (34%), Positives = 223/418 (53%), Gaps = 12/418 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL  +++  +    + + T IQ + IP+ +   D+   ++TG+GKT +F+LPML
Sbjct: 1   MQFKELGLDNRLLKTLAHYDFKQATDIQRQAIPVAMAGKDLLASSKTGSGKTLAFLLPML 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   R PR +IL PTRELA QV           + T  L+ GG  F  Q   L
Sbjct: 61  HKALKTKALSARDPRGVILVPTRELAKQVYSELRSALAGLSYTATLITGGENFNDQVNAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            RG   ++ TPGR+ DH     L +  ++ L++DEADRMLD+GF P +++I +     R 
Sbjct: 121 RRGPKFIVATPGRLADHLEHRSLFLQGLDTLILDEADRMLDLGFAPQLRHIHNAAKHRRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+   E+  ++   L+ PKRI +   +   + I   F         K ALL +
Sbjct: 181 QTLMFSATLDHAEMNTIAHEMLKEPKRIAIGLGNEQHKDIRQRFYLC-DHLDHKEALLDR 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L   +  +  IIF   + +   L + L +Q   V A+ G++ Q  R  I+S F+    +
Sbjct: 240 ILNDAE-YRQVIIFTATRADTERLTNKLNEQNLKVVALSGSLTQTQRNTIMSQFERAVFK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLDI +V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D    
Sbjct: 299 ILVTTDIASRGLDIANVTHVINFDMPKHTEEYVHRVGRTGRAGNQGDAISLVGPKDWDSF 358

Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNP--PLEKIDIAQHNHARKNNPIPQKSTGFDR 408
             +E  +++ + +     L G  + L P  PL K  ++     ++   +PQK    D+
Sbjct: 359 KRVEAFLQQDIQFEVLEGLQGKFTGLRPRQPLNKATVSTGKVKKQVKTLPQKPVKRDK 416


>gi|332994271|gb|AEF04326.1| ATP-dependent RNA helicase SrmB [Alteromonas sp. SN2]
          Length = 414

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 209/370 (56%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L  ++  AV D GY  PT +Q   IP  +   D+   A TGTGKTA+F+LP+ 
Sbjct: 1   MTFEDLELDEELCHAVADMGYESPTSVQSLVIPHAMDGRDILASAPTGTGKTAAFLLPVC 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +    R LIL PTRELA QV +   +  K+ ++   ++ GGI +    + L
Sbjct: 61  QFLLDYPRKQPGSTRILILTPTRELALQVYEQAVELTKHTDIVSGVITGGINYGTDRETL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+L+ TPGR+ +H         +IE L++DEADRMLDMGF   +  I S   + +Q
Sbjct: 121 SQSIDILVATPGRLFEHIQNEMADCRDIECLILDEADRMLDMGFRTIVNQIASEARWRKQ 180

Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            +LFSAT+    + + +++ LQNP+ IE   PS   +   H +       + K ALL  +
Sbjct: 181 NMLFSATLEGGGVSQFAKDILQNPEVIEA-FPSRKEKNKIHQWYHLADDLNHKKALLVHI 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ Q T    ++F   ++ +  L   L  Q   VC + G + Q  RM  L+ FK G + +
Sbjct: 240 LKEQAT--TTVVFVKTRERLQMLKDYLASQDIMVCWLQGEMPQDKRMAALTRFKSGEVPV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+P+V HV NFD+P +A+ Y+HRIGRTGRAG  G A +L+   D + I 
Sbjct: 298 LLATDVAARGIDVPEVSHVINFDMPRKADVYVHRIGRTGRAGAKGTAISLIEAHDFEFIT 357

Query: 359 AIEKLIEKKV 368
              +  E+ +
Sbjct: 358 KAARYTEEPI 367


>gi|293391525|ref|ZP_06635859.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952059|gb|EFE02178.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 443

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 130/364 (35%), Positives = 209/364 (57%), Gaps = 4/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FAD  L+P+++ A+   GY +PT IQ +TIP  +   DV G A TGTGKTA+F+LP +
Sbjct: 5   IQFADFDLAPELLNALQKKGYQRPTAIQQETIPAAMGGGDVLGSAPTGTGKTAAFLLPAI 64

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR L+L PTRELA QVA+  ++      L++A + GG+ ++   +  
Sbjct: 65  QHLLDYPRRKPGAPRVLVLTPTRELAMQVAEQAKELACFTKLSIATITGGVAYQNHGEIF 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR+L +          +EIL+ DEADRML MGF    + I +   + +Q
Sbjct: 125 NKNQDIVVATPGRLLQYIKEENFDCRTVEILIFDEADRMLQMGFGQDAEKIAAETRWRKQ 184

Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           TLLFSAT+  D L+  +   L  P +IE        + I+  +    + +  K  LL + 
Sbjct: 185 TLLFSATLEGDLLEDFAARTLNEPVKIEAEPSRRERKKIQQWYYHADS-HEHKFKLLARF 243

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ Q+ +  GI+F  +++ V  L  +L K+G     + G + Q  R   +   K G + +
Sbjct: 244 IE-QEQVSKGIVFVRRREEVRELAENLRKRGIRSAYLEGEMAQTQRNNAIDKLKNGVVTV 302

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V++D++ARG+DI DV H+ NFD+P  A+ Y+HRIGRT RAG+ G A + V   D + + 
Sbjct: 303 LVSTDVSARGIDIDDVSHIMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYRLLG 362

Query: 359 AIEK 362
            I++
Sbjct: 363 KIKR 366


>gi|195998213|ref|XP_002108975.1| hypothetical protein TRIADDRAFT_63563 [Trichoplax adhaerens]
 gi|190589751|gb|EDV29773.1| hypothetical protein TRIADDRAFT_63563 [Trichoplax adhaerens]
          Length = 654

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 143/386 (37%), Positives = 217/386 (56%), Gaps = 13/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++      V+  + + G+  PTPIQ ++ P+ L   DV GIAQTG+GKT ++VLP +
Sbjct: 79  LSFSEASFPDYVMSEINNQGFKLPTPIQAQSWPVGLSGRDVVGIAQTGSGKTLAYVLPSI 138

Query: 61  TILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            I  K +  +R    P  LIL PTRELA QV      +G+   +  A + GG P   Q +
Sbjct: 139 -IHIKNQPPLRHGDGPIALILCPTRELAQQVHSVSTTFGRLARINCACIYGGSPKGPQLR 197

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++ + TPGR+LD     +  +N    LV+DEADRMLDMGF P I+ I   +   
Sbjct: 198 ELSRGVEICVATPGRLLDFLESRRTNLNRCSYLVLDEADRMLDMGFEPQIKQIIGSIKCP 257

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKC 232
           RQT+++SAT   E++ ++  FL++  +I + +   T      + +E C      +  K C
Sbjct: 258 RQTVMWSATWPKEIRTLAREFLRDYVQINIGSSDLTTNHNIKQIVEVC--REEEKEDKLC 315

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL  +L+  +  K  I+F   KK    L   L + G+ V  IHG+  Q  R ++LS F+
Sbjct: 316 KLLSDILRQDE--KKTIVFVETKKKSDYLSRRLVRSGWPVLCIHGDKCQSERDRVLSEFR 373

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G I +++A+D+AARGLDI DV  V N+D PN +E+Y+HRIGRT R+G+ G A+T     
Sbjct: 374 SGRIPVLIATDVAARGLDISDVKLVINYDFPNNSEDYVHRIGRTARSGKTGTAYTFFTAS 433

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           +I+    +  L+ +    +N DL  L
Sbjct: 434 NIRQSPNLIALLREANQPINPDLIQL 459


>gi|157121045|ref|XP_001653747.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882993|gb|EAT47218.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 814

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 138/386 (35%), Positives = 215/386 (55%), Gaps = 42/386 (10%)

Query: 3   FADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +++ G  PK +  ++D  GY +PTPIQ + IP+ LQ  D+ GIA+TG+GKT +F++P+LT
Sbjct: 388 WSETGF-PKEILDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGIAETGSGKTLAFLIPLLT 446

Query: 62  ILEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            ++      R+      P  +IL PTRELA Q+ +  +K+G+   +   +++GG+  E Q
Sbjct: 447 WIQSLPKIDRLETADQGPYAIILAPTRELAQQIEEETQKFGQPLGIRTVVVVGGLSREEQ 506

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 507 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 566

Query: 176 FT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRI---EV 207
            T                         RQT++F+ATM   +++++  +L+ P  +    V
Sbjct: 567 VTNLKPDTEEAEDASKLMENFNTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSV 626

Query: 208 NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
             P+   E I H       +  K+  L++ L  S+      IIF NQKK    L   LEK
Sbjct: 627 GKPTERTEQIVHIMT----ENEKRKKLMEIL--SRGVEPPCIIFVNQKKGADVLAKGLEK 680

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            G++ C +HG   Q  R   L++ K G+  ++VA+D+A RG+DI DV  V N+D+    E
Sbjct: 681 LGYNACTLHGGKGQEQREYALASLKNGSKDILVATDVAGRGIDIKDVSLVINYDMAKTIE 740

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKED 353
           +Y HRIGRTGRAG+ G A +   K+D
Sbjct: 741 DYTHRIGRTGRAGKTGCAISFCTKDD 766


>gi|94314203|ref|YP_587412.1| 23S rRNA ATP-dependent RNA helicase [Cupriavidus metallidurans
           CH34]
 gi|93358055|gb|ABF12143.1| ATP-dependent RNA helicase, specific for 23S rRNA [Cupriavidus
           metallidurans CH34]
          Length = 467

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 143/369 (38%), Positives = 203/369 (55%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L LS  +   ++  GY   TPIQ  ++PL L  HD+   A+TG+GKTA+F L +L  
Sbjct: 9   FATLPLSAAMQATLVQLGYDAMTPIQAASLPLALAGHDLIAQARTGSGKTAAFALSLLHR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     V+    L+L PTRELA QV     +  +   N+ V  L GG P   Q + L  
Sbjct: 69  LDPRPLDVQ---ALVLCPTRELADQVTQEIRRLARAEDNVKVLTLSGGTPIRPQVESLVH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH +RG L ++ I  LV+DEADRMLDMGF   I  I S  P  RQTL
Sbjct: 126 GAHVVVGTPGRIIDHLDRGSLNIDAINTLVLDEADRMLDMGFHDDIAFIASHAPKDRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    + K++  FL+ PK ++V      A   +  +             L    + 
Sbjct: 186 LFSATYPAAIDKLAHRFLRQPKTVKVEEAHDAATITQRFYEVEEGDRLNAVGRLLDHFRP 245

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+     FCN K    +L   L  QG++   +HG++DQR R ++L  F   +  ++VA
Sbjct: 246 ATTLA----FCNTKARCRDLADLLRAQGYAALELHGDLDQRDRDQVLVQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HR+GRTGRAG  G AF+LV+ +++  +  IE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRVGRTGRAGEAGSAFSLVSLDEMGRVGNIE 361

Query: 362 KLIEKKVDW 370
           +    + +W
Sbjct: 362 QHQGGEFEW 370


>gi|300855475|ref|YP_003780459.1| putative ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300435590|gb|ADK15357.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 369

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 216/368 (58%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF +L LS  ++  +   G  KPTPIQ ++I  + +  DV   AQTGTGKT +F+LP  
Sbjct: 1   MDFKELELSENIINELKHMGITKPTPIQQESIKFIREGKDVIAEAQTGTGKTLAFLLP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I E     +   + LI+ PTRELA Q+ +   K  K  ++ +    GG    +Q KKL+
Sbjct: 59  -IFENISPNINSTQALIVTPTRELAIQITEEALKLKKAKDINILAAYGGKDIGSQLKKLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++I TPGR+LDH +R  + ++ ++ LV+DEAD+ML MGF   +++I   V   RQT
Sbjct: 118 RNIHLIIATPGRLLDHLHRKTIDLSKLKTLVLDEADQMLLMGFKNDVEDIIKEVSKKRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  +++K++  ++ +P  + +     T   I+   + T     K+ AL   + Q
Sbjct: 178 LCFSATMNSDVKKLAYRYMTDPLVVSIKKEKVTLNNIKQYVIET-TDRKKQDALCNIIDQ 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               M   IIFC  K+ V +L  +L ++G++   +H +I Q  R +I+ +F+   IQ ++
Sbjct: 237 DNPFM--AIIFCRTKRRVDDLEIALYQRGYNCKKLHSDIPQSKRERIMKSFRNADIQYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V H++N+D+P   E+YIHRIGRTGRAG  G     V  +D + ++ I
Sbjct: 295 ATDVAARGLDISGVTHIYNYDIPENVESYIHRIGRTGRAGEEGCTCLFVDPKDKRTLEEI 354

Query: 361 EKLIEKKV 368
           E+ I+ ++
Sbjct: 355 ERGIKFRI 362


>gi|170029482|ref|XP_001842621.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Culex
           quinquefasciatus]
 gi|167863205|gb|EDS26588.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Culex
           quinquefasciatus]
          Length = 815

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 139/379 (36%), Positives = 212/379 (55%), Gaps = 41/379 (10%)

Query: 10  PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI------ 62
           PK V  ++D  GY +PTPIQ + IP+ LQ  D+ GIA+TG+GKT +F++P+L        
Sbjct: 395 PKEVLEIIDKVGYKEPTPIQRQAIPIGLQNRDIIGIAETGSGKTLAFLIPLLNWIQGLPK 454

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E+     + P  +IL PTRELA Q+ +  +K+G+   +   +++GG+  E Q  +L  G
Sbjct: 455 IERQETADQGPYAIILAPTRELAQQIEEETQKFGQPLGIRTVVVVGGLSREEQGFRLRLG 514

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177
            +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P T     
Sbjct: 515 CEIVIATPGRLIDVLENRYLVLNQCTYIVMDEADRMIDMGFEPDVQKILEYMPVTNLKPD 574

Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTA 214
                               RQT++F+ATM   +++++  +L+ P  +    V  P+   
Sbjct: 575 TEEAEDATKLMENFNTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERT 634

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           E I H  + T  +  KK   L ++L S+      IIF NQKK    L   LEK G++ C 
Sbjct: 635 EQIVH--IVTENEKRKK---LMEIL-SRGVEPPCIIFVNQKKGADVLAKGLEKLGYNACT 688

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG   Q  R   L++ K G+  ++VA+D+A RG+DI DV  V N+D+    E+Y HRIG
Sbjct: 689 LHGGKGQEQREYALASLKNGSKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIG 748

Query: 335 RTGRAGRHGKAFTLVAKED 353
           RTGRAG+ G A +   K+D
Sbjct: 749 RTGRAGKTGCAISFCTKDD 767


>gi|271500546|ref|YP_003333571.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270344101|gb|ACZ76866.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
          Length = 457

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 221/370 (59%), Gaps = 9/370 (2%)

Query: 3   FADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA+L  L+ + +  + + GY+  TPIQ   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FAELNALAAEQLTTLNELGYLSMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+ G+ + +   +L+L PTRELA QVA+   +  +   N+ V +L GG+PF  Q   L 
Sbjct: 64  HLDAGQFKTQ---SLVLCPTRELADQVANELRRLARGMPNIKVLVLCGGVPFSIQRDSLI 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +  + ++ ++ LV+DEADRMLDMGF   I  +    P  RQT
Sbjct: 121 HAPHIIVATPGRLLDHLKKETVSLDALQTLVLDEADRMLDMGFADAIDEVIHHAPAERQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  +S    ++P  IE++T       +E  F       + K  LLQ+LL 
Sbjct: 181 LLFSATWPEAIAAISRRIQRDPLVIEIDTVDEL-PAVEQQFYEV--SRNGKLDLLQKLL- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++   + ++FCN KK+   +  +L     SV A+HG+++QR R + L  F  G+ +++V
Sbjct: 237 SREQPASCVVFCNTKKDCQAVYDALTHSNQSVLALHGDMEQRDRDQTLVRFANGSSRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +L A E+ +  +A+
Sbjct: 297 ATDVAARGLDIKALEMVINYELSWDPEVHVHRIGRTARAGEQGLAISLCAPEEAQRANAL 356

Query: 361 EKLIEKKVDW 370
           E++++ K+ W
Sbjct: 357 EEMLKMKLTW 366


>gi|195580593|ref|XP_002080120.1| GD24302 [Drosophila simulans]
 gi|194192129|gb|EDX05705.1| GD24302 [Drosophila simulans]
          Length = 519

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 217/369 (58%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLGL+  +  A  +  +  P+ IQ + IP+ LQ  DV G+A+TG+GKT +F LP+L
Sbjct: 65  LTWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 124

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      L+L PTRELA Q+ + FE  G    +   +++GG+   AQ  +L 
Sbjct: 125 HALLENPQRYF---ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 181

Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGR++DH    K   +  I+ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 182 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 241

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L++P ++EV+    T E ++  ++    +Y  K   L  +L
Sbjct: 242 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKY--KDVYLVHIL 299

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK     ++
Sbjct: 300 -NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKTKNRSIL 358

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA TLV++ DI+    
Sbjct: 359 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQR 418

Query: 360 IEKLIEKKV 368
           IE L+ K++
Sbjct: 419 IEHLLGKQL 427


>gi|239615016|gb|EEQ92003.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis ER-3]
 gi|327357154|gb|EGE86011.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 548

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 135/374 (36%), Positives = 211/374 (56%), Gaps = 13/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ KPT IQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 132 FDEAGFPQYVMSEVKAQGFAKPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 191

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 192 INAQPLLAPGDG----PIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQI 247

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 248 RDLTRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 307

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT ++SAT   ++++++++FL +  ++ + +   +A       V   +++ K+  + +
Sbjct: 308 DRQTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAK 367

Query: 237 QLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            L +  +  KN   +IF   K+   ++   L + G+   +IHG+  Q  R  +L+ FK G
Sbjct: 368 HLDRIMEENKNAKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTG 427

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A TL   ++ 
Sbjct: 428 KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNA 487

Query: 355 KHI-DAIEKLIEKK 367
           K   D +  L E K
Sbjct: 488 KQARDLVSILTESK 501


>gi|149910407|ref|ZP_01899049.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
 gi|149806555|gb|EDM66524.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
          Length = 460

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 140/371 (37%), Positives = 216/371 (58%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D G+ P+++ ++   G+ + T +Q   IPL+L   D+   +QTG+GKT ++ LP+L
Sbjct: 1   MRFQDFGIDPRLISSIEHLGFEQATEVQEAAIPLILGGCDIMATSQTGSGKTIAYGLPIL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L++ R   R  R +IL PTRELA QV  N +  G + +  + L+IG   F+ Q K L
Sbjct: 61  QRMLKQRRFEHRAVRAVILAPTRELAIQVHANMKHLGMSLDYQIQLIIGRESFQHQEKLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTR 178
            +  +VLI TPGR+LDH     + + ++E LV+DEADRMLDMGF   +  I++  P   R
Sbjct: 121 RKNPEVLIATPGRLLDHIREKSISLEHLEFLVLDEADRMLDMGFRDDVSAISNSAPNVKR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QT+LFSAT+   ++  +    L+ P+RIE+N  +   E IE     +    + K   L  
Sbjct: 181 QTMLFSATLEHVDVANICNQVLRAPERIEINRSNDQHEKIEQRLFFS-DNLTHKEEQLVH 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++S+D  +  +IF   K +   L   L        +IHG++ Q  R + L +F+ G + 
Sbjct: 240 LVKSED-YRQLLIFTATKLDTERLAKLLMDNDIDATSIHGDMLQNQRKRTLEDFRRGRVG 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV NFD+P   E++IHR GRTGRAG  G A +LV+ +D    
Sbjct: 299 VLVATDVAARGLDIRTLSHVINFDLPINPEDFIHRTGRTGRAGATGIAISLVSPKDWTSF 358

Query: 358 DAIEKLIEKKV 368
             I+  ++ K+
Sbjct: 359 GKIQSYLKVKL 369


>gi|288818118|ref|YP_003432466.1| ATP-dependent RNA helicase [Hydrogenobacter thermophilus TK-6]
 gi|288787518|dbj|BAI69265.1| ATP-dependent RNA helicase [Hydrogenobacter thermophilus TK-6]
 gi|308751719|gb|ADO45202.1| DEAD/DEAH box helicase domain protein [Hydrogenobacter thermophilus
           TK-6]
          Length = 365

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 141/367 (38%), Positives = 217/367 (59%), Gaps = 7/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F    LS  +  A+ D GY +PTPIQ + IPL L+ +D+ G A TGTGKTA+F +P++
Sbjct: 1   MEFNFQQLSEILQKAIRDLGYEEPTPIQKEAIPLALKGYDIMGQAATGTGKTAAFGIPIV 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + K        + L+L PTRELA QV +      K   L V +  GG P     + L 
Sbjct: 61  EKISKDDGL----KALVLTPTRELALQVKEQLYALSKYKALKVFVFYGGTPVRRDLELLS 116

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   +++I TPGRI D  +RG L +  +  LV+DEAD MLDMGF+  I++I +  P  RQ
Sbjct: 117 KVVPNIVIGTPGRIKDLLSRGVLNLGGVSFLVLDEADLMLDMGFVEDIESIIAYTPKDRQ 176

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT+  E++ ++   L++  +      +     IE   +   +   +K + L+++L
Sbjct: 177 TFLFSATIPKEIELLARKHLKDDYKFVRVISAELKPKIEERLIRLNSS-KQKISELERIL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +  ++  IIF   KK+  ++   L+ +GFSV ++HG++ QR R   L  F+EG ++ +
Sbjct: 236 R-EHLLEKVIIFVRTKKDARDISQELKNRGFSVVSLHGDMTQRQRENALKLFREGKVKTV 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI  V  V N+ +P   E YIHRIGRTGR G +GKA++L+  ED K +  
Sbjct: 295 VATDVASRGLDIKGVSLVINYQIPEDPEVYIHRIGRTGRVGSYGKAYSLITPEDSKALWR 354

Query: 360 IEKLIEK 366
           I+K+ E+
Sbjct: 355 IKKVKER 361


>gi|34539956|ref|NP_904435.1| DEAD-box ATP dependent DNA helicase [Porphyromonas gingivalis W83]
 gi|34396267|gb|AAQ65334.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Porphyromonas
           gingivalis W83]
          Length = 604

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 222/369 (60%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61
           F +LG++   + A+ + G+ +P P+Q + IP +L    D+  +AQTGTGKTA+F LP+L 
Sbjct: 4   FEELGIAKPFLKAIAELGFEQPMPVQEEVIPYLLGEDIDLIALAQTGTGKTAAFGLPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++    R   P+ L+L PTREL  Q+AD+   Y K   ++ +  + GG P +AQ + L 
Sbjct: 64  KIDLSGGR---PQALVLCPTRELCLQIADDLNSYSKYLSDVHILPVYGGTPIDAQIRALR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  + +++I  +V+DEAD ML+MGF   ++ I + +P  R  
Sbjct: 121 RGVQIVVATPGRLLDLMRREAVSLSDIHTVVLDEADEMLNMGFAEDLEQILADIPSERHL 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+ K++ +++++PK I +   +     I+H +    A++  K   L+++  
Sbjct: 181 LLFSATMPKEISKIATSYMKDPKEIVIGNKNEGNANIKHLYYMVSARH--KYLALKRIAD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GI+FC  +K    +   L + G++  ++HG++ Q  R  ++  F+   +QL+V
Sbjct: 239 YYPNI-YGIVFCRTRKETQEIADQLIQDGYNADSLHGDLSQAQRDYVMQKFRVRNLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV +F +P+  E+Y HR GRT RAG+ G +  +   ++   I  I
Sbjct: 298 ATDVAARGLDVNDLTHVIHFGLPDDVESYTHRSGRTARAGKTGLSIAICHVKEKGKIKNI 357

Query: 361 EKLIEKKVD 369
           E+ ++K+++
Sbjct: 358 ERTMQKQIE 366


>gi|242051719|ref|XP_002455005.1| hypothetical protein SORBIDRAFT_03g002860 [Sorghum bicolor]
 gi|241926980|gb|EES00125.1| hypothetical protein SORBIDRAFT_03g002860 [Sorghum bicolor]
          Length = 488

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 140/427 (32%), Positives = 230/427 (53%), Gaps = 38/427 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D+G    V+  +  AG+V+PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP +
Sbjct: 91  LEFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAI 150

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                  IL  G      P  L+L PTRELA Q+     K+G +  +    + GG+P   
Sbjct: 151 VHVNAQPILAPGDG----PIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGP 206

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L++G +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +
Sbjct: 207 QVRDLQKGVEIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQI 266

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQ-YSKK 231
              RQTL +SAT   E+++++ NFL +P ++ + +    A    ++H  + + +Q Y+K 
Sbjct: 267 RPDRQTLYWSATWPKEVEQLARNFLFDPYKVTIGSEELKANHAIVQHVEILSESQKYNKL 326

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL+ ++     +    IF + KK    +   L   G+   +IHG+  Q  R  +LS F
Sbjct: 327 VNLLEDIMDGSRIL----IFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEF 382

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   +M A+D+AARGL    V +V N+D P   E+Y+HRIGRTGRAG  G A++    
Sbjct: 383 KSGKSPIMTATDVAARGL----VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYSFFTA 438

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            + +    +  ++E+    ++ +L+++                +  P P  S+G+  R +
Sbjct: 439 ANARFAKELISILEEAGQKVSSELAAMG---------------RGAPPP--SSGYRDRYR 481

Query: 412 NYSSQKS 418
            Y   +S
Sbjct: 482 GYGGGRS 488


>gi|314927518|gb|EFS91349.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1]
 gi|328907794|gb|EGG27557.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium sp.
           P08]
          Length = 536

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 148/410 (36%), Positives = 225/410 (54%), Gaps = 20/410 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L  
Sbjct: 35  FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 94

Query: 63  L----EKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    ++G   +     P+ L++ PTRELA QV+ +           V  + GG+ +E Q
Sbjct: 95  ITLPGDEGWEELTTKGKPQALVMCPTRELALQVSQDISTAASVRGARVLTVYGGVGYEPQ 154

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G DV++ TPGR+LD   R  L ++++ I+V+DEAD MLD+GF+P ++N+    P
Sbjct: 155 IDALQAGVDVVVGTPGRLLDLSQRKNLDLSHVHIVVLDEADEMLDLGFLPDVENLIGRTP 214

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT+LFSATM   +  ++ + L  P  +      + A   +       A    K  ++
Sbjct: 215 TPRQTMLFSATMPAPIMALARSQLNRPVHVRAEGADTQATVPDTQQFVYQAHPLDKIEII 274

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            ++LQ+ D  K  IIFC  K+    L   L  +GF   AIHG++ Q +R K L  F+ G 
Sbjct: 275 GRILQANDAEKV-IIFCRTKRACQRLSDDLNDRGFKARAIHGDLTQVAREKALKRFRHGD 333

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   D+ 
Sbjct: 334 VTILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGTKGVAVTLVDWADVT 393

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
                 KLI+K    LN +LS    P+E    + H +   +  IP+ + G
Sbjct: 394 RW----KLIDKA---LNLELSE---PVETYSTSPHLYTDLD--IPEDARG 431


>gi|221504668|gb|EEE30341.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 522

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 140/381 (36%), Positives = 213/381 (55%), Gaps = 35/381 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A+  L  +++ AV  A Y +PTPIQ++ IP+ L++ D+ GIA+TG+GKTA+FVLPMLT 
Sbjct: 103 WAESALPWELIEAVKHANYDRPTPIQMQAIPIALEQRDLIGIAETGSGKTAAFVLPMLTY 162

Query: 63  LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           + KG   +        P  LIL P+RELA Q+ +  +K+          ++GG   E Q 
Sbjct: 163 V-KGLPPLNEDTGQDGPYALILAPSRELALQIDEETQKFASFCKCQTVAVVGGRSAETQA 221

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RGA+++I TPGR+ D   +   ++N    +V+DEADRM+DMGF   +  I   +P 
Sbjct: 222 FQLRRGAEIVIGTPGRVKDCLEKAYTVLNQCNYVVLDEADRMIDMGFEEIVNFILDQIPT 281

Query: 177 T------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS 212
           +                        R T +FSATM   +++++  +L+ P  I +  P +
Sbjct: 282 SNLKSNDEALILQQEMQAKAGHRLYRLTQMFSATMPPAVERLARKYLRQPSYISIGDPGA 341

Query: 213 TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
               IE      +   ++K   LQ +L+  +     ++F NQKK+   L   L K G+S 
Sbjct: 342 GKRAIEQ--RVEFVPEARKKQRLQDVLE--NATPPVMVFVNQKKSADALAKVLGKLGYSA 397

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           C++HG   Q +R   LS+FKEG+  ++VA+D+A RG+D+  V  V NFD+P   E Y HR
Sbjct: 398 CSLHGGKAQENREAALSSFKEGSHDVLVATDVAGRGIDVEGVQLVVNFDMPKDIEAYTHR 457

Query: 333 IGRTGRAGRHGKAFTLVAKED 353
           IGRTGRAGR G A + + +ED
Sbjct: 458 IGRTGRAGRKGLAISFLTEED 478


>gi|313674606|ref|YP_004052602.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312941304|gb|ADR20494.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 405

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 137/371 (36%), Positives = 214/371 (57%), Gaps = 8/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +L   P +   +   G+ K TPIQ + IP +L+  D+   AQTGTGKTA+FVLP+L
Sbjct: 1   MEFKELNFHPTLSEGLEMMGFQKATPIQTEAIPKILEGKDLIACAQTGTGKTAAFVLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             +       +   TLI+ PTREL  Q+    E +    N +   + GG     +E Q K
Sbjct: 61  HKIANS-GETKGVNTLIIAPTRELVQQIDQQIEGFSYFTNASSIAIYGGGDGAAWEQQKK 119

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +  G D+L+ TPGR++   N  +  ++N++ L++DEADRMLDMGF   I  I   +P  
Sbjct: 120 AIRAGVDILVATPGRLIALLNSNETQLDNVQHLILDEADRMLDMGFHDDIMRIVKQLPQK 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM  +++K++   L NP+ I ++     A   +  F+ TY  +  K  LL+ 
Sbjct: 180 RQTLLFSATMPPKIKKLAGAILNNPEEISLSISKPAAGISQKAFL-TYDGH--KTQLLKF 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L S    +  I+F  +K  V +L   L+  G SV A   ++DQ+ R  I+ +F+   +Q
Sbjct: 237 ILGS-GIYETAIVFAGKKDKVKSLERDLKDIGMSVKAFSSDLDQKEREIIMRDFRAKKVQ 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ +D+ +RG+D+ ++  V N+DVP   E+Y+HRIGRT RA   G+A T + + D++  
Sbjct: 296 VLIGTDIISRGIDVENISLVVNYDVPGDPEDYVHRIGRTARAATKGEAITFINEMDMEKF 355

Query: 358 DAIEKLIEKKV 368
           + IE LIEK +
Sbjct: 356 NRIEALIEKSI 366


>gi|315503693|ref|YP_004082580.1| dead/deah box helicase domain protein [Micromonospora sp. L5]
 gi|315410312|gb|ADU08429.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5]
          Length = 553

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 132/363 (36%), Positives = 208/363 (57%), Gaps = 2/363 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA LG   + V A+  AG  +   IQ   +P+ L+  D+ G A TGTGKT  F +P+L  
Sbjct: 23  FAALGARQETVEALAAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGIPLLER 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +         +P+ L++ PTREL  QVA + +  G+   + V  + GG+ +E Q + L +
Sbjct: 83  VFAPSEGSDGVPQALVVVPTRELGIQVAKDLDAAGRTRGVRVLPIYGGVAYEPQIEALRK 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G ++L+ TPGR+LD   +  L ++ +  LV+DEADRMLD+GF+  ++ I +++P  RQT+
Sbjct: 143 GVEILVGTPGRLLDLQKQKHLRLDRVRALVLDEADRMLDLGFLDDVEKILAMLPEDRQTM 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +  +S  FL+ P  I     + T  + +   +A       K  ++ ++LQ+
Sbjct: 203 LFSATMPDPIVALSRRFLRRPVTIHAGHTAETGPSPQTTQLAYRTHSLNKVEIVARILQA 262

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      +IF   K+    +   L+ +GF+V A+HG++ Q +R + L  F+ G I  +VA
Sbjct: 263 EGRGLT-MIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDTLVA 321

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+  V HV N+D P   + Y HRIGRTGRAG  G A T V  +D+     I+
Sbjct: 322 TDVAARGIDVTGVTHVINYDCPEDQDTYTHRIGRTGRAGATGVAVTFVDWDDMPRWRIID 381

Query: 362 KLI 364
           K +
Sbjct: 382 KTL 384


>gi|302870034|ref|YP_003838671.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302572893|gb|ADL49095.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca
           ATCC 27029]
          Length = 553

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 132/363 (36%), Positives = 208/363 (57%), Gaps = 2/363 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA LG   + V A+  AG  +   IQ   +P+ L+  D+ G A TGTGKT  F +P+L  
Sbjct: 23  FAALGARQETVEALAAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGIPLLER 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +         +P+ L++ PTREL  QVA + +  G+   + V  + GG+ +E Q + L +
Sbjct: 83  VFAPSEGSDGVPQALVVVPTRELGIQVAKDLDAAGRTRGVRVLPIYGGVAYEPQIEALRK 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G ++L+ TPGR+LD   +  L ++ +  LV+DEADRMLD+GF+  ++ I +++P  RQT+
Sbjct: 143 GVEILVGTPGRLLDLQKQKHLRLDRVRALVLDEADRMLDLGFLDDVEKILAMLPEDRQTM 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +  +S  FL+ P  I     + T  + +   +A       K  ++ ++LQ+
Sbjct: 203 LFSATMPDPIVALSRRFLRRPVTIHAGHTAETGPSPQTTQLAYRTHSLNKVEIVARILQA 262

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      +IF   K+    +   L+ +GF+V A+HG++ Q +R + L  F+ G I  +VA
Sbjct: 263 EGRGLT-MIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDTLVA 321

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+  V HV N+D P   + Y HRIGRTGRAG  G A T V  +D+     I+
Sbjct: 322 TDVAARGIDVTGVTHVINYDCPEDQDTYTHRIGRTGRAGATGVAVTFVDWDDMPRWRIID 381

Query: 362 KLI 364
           K +
Sbjct: 382 KTL 384


>gi|152995724|ref|YP_001340559.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150836648|gb|ABR70624.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 448

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 140/390 (35%), Positives = 220/390 (56%), Gaps = 12/390 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + G   +++ ++   G+ + T IQ + IP  +   D+   ++TG+GKT +++LP L
Sbjct: 1   MLFEEFGFDNRILKSIGHLGFDEATEIQARAIPEAMAGRDLLASSKTGSGKTLAYLLPAL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + K +A   R PR +IL PTRELA QV             T  L+ GG  F  Q+K L
Sbjct: 61  HRVYKKKALSKRDPRVVILVPTRELAKQVFGQLRLLLAASRFTSILIQGGENFNDQHKSL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TR 178
           ++    ++ TPGR++DH  +  + +  +E+LV+DEADRMLD+GF   ++ I S      R
Sbjct: 121 QKDPHFIVATPGRLVDHLKQRHVFLEGLELLVLDEADRMLDLGFADAMRAINSAASHRQR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL FSAT+ + E+ +++   L+ P R+ +         I +H  +  +  +  K ALL+
Sbjct: 181 QTLFFSATLDNTEISEIAGELLREPSRVAIGQGFDEHTDISQHVLLCDHLDH--KEALLK 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL  Q T+K  I+F   K + V L   +   G S  A++GN+ Q +R K + +F +G  
Sbjct: 239 HLLVGQ-TIKQAIVFTATKSDTVRLSEIIAGWGLSTQALNGNLSQSARNKTMESFAKGQF 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++V++D+A+RGLDI  V HVFNFD+P +AE ++HR GRTGRAG  G A++LV  +D  +
Sbjct: 298 DVLVSTDVASRGLDIASVSHVFNFDLPKQAEEFVHRTGRTGRAGFKGDAYSLVGPKDWVN 357

Query: 357 IDAIEKLIEK-----KVDWLNGDLSSLNPP 381
             AIE  ++K      ++ L      L PP
Sbjct: 358 FKAIEVFLQKTFTTESIEGLEAKFKGLLPP 387


>gi|159469622|ref|XP_001692962.1| DEAD box RNA helicase [Chlamydomonas reinhardtii]
 gi|158277764|gb|EDP03531.1| DEAD box RNA helicase [Chlamydomonas reinhardtii]
          Length = 407

 Score =  249 bits (636), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 132/335 (39%), Positives = 197/335 (58%), Gaps = 7/335 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL----EKGRARVRMPRTL 76
           +V P+PIQ +  P++L   D+ GIA TG+GKT  F LPML  +    E G    + P  +
Sbjct: 8   FVAPSPIQAQCWPIILAGRDLIGIAATGSGKTLGFGLPMLRHIAAQREAGVVTGKGPFAV 67

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           ++ PTRELA Q+ +  E+ G    +    + GG+P   Q + L  G +V++ TPGR+ D 
Sbjct: 68  VMAPTRELALQINEVLEEAGSKCGVRTVCVYGGVPKHPQIQALRSGVEVVVGTPGRMEDL 127

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
            N G L +N I   V+DEADRMLD+GF P+I+ I +L    RQTL+FSAT    +QK++ 
Sbjct: 128 LNDGALKLNQITYAVLDEADRMLDLGFEPHIRAIMNLTRADRQTLMFSATWPTAVQKLAV 187

Query: 197 NFLQNPKRIEVNTP--SSTAETIEHC-FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
            FL +P ++ + +   +++    +H   +  +A+  +   LLQQ   ++      IIF  
Sbjct: 188 AFLSHPVKVTIGSQDLAASHSITQHVEVIEPHARDGRLLDLLQQYHGAKGRKNRVIIFVL 247

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            KK    +   L ++G+   AIHG+I Q+ R   +  FK G + L++A+D+AARGLDIPD
Sbjct: 248 YKKEAPRVEQLLTRKGWKAGAIHGDISQQQRTDAVEKFKSGAVPLLIATDVAARGLDIPD 307

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           V  V N+  P   E+Y+HRIGRTGRAG+ G A+T 
Sbjct: 308 VEVVINYSFPLTTEDYVHRIGRTGRAGKTGVAYTF 342


>gi|188995896|ref|YP_001930148.1| ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC 33277]
 gi|188595576|dbj|BAG34551.1| ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC 33277]
          Length = 604

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 222/369 (60%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61
           F +LG++   + A+ + G+ +P P+Q + IP +L    D+  +AQTGTGKTA+F LP+L 
Sbjct: 4   FEELGIAKPFLKAIAELGFEQPMPVQEEVIPYLLGEDIDLIALAQTGTGKTAAFGLPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++    R   P+ L+L PTREL  Q+AD+   Y K   ++ +  + GG P +AQ + L 
Sbjct: 64  KIDLSGGR---PQALVLCPTRELCLQIADDLNSYSKYLSDVHILPVYGGTPIDAQIRALR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+LD   R  + +++I  +V+DEAD ML+MGF   ++ I + +P  R  
Sbjct: 121 RGVQIVVATPGRLLDLMRREAVSLSDIHTVVLDEADEMLNMGFAEDLEQILADIPSERHL 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+ K++ +++++PK I +   +     I+H +    A++  K   L+++  
Sbjct: 181 LLFSATMPKEISKIAASYMKDPKEIVIGNKNEGNANIKHLYYMVSARH--KYLALKRIAD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GI+FC  +K    +   L + G++  ++HG++ Q  R  ++  F+   +QL+V
Sbjct: 239 YYPNI-YGIVFCRTRKETQEIADQLIQDGYNADSLHGDLSQAQRDYVMQKFRVRNLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV +F +P+  E+Y HR GRT RAG+ G +  +   ++   I  I
Sbjct: 298 ATDVAARGLDVNDLTHVIHFGLPDDVESYTHRSGRTARAGKTGLSIAICHVKEKGKIKNI 357

Query: 361 EKLIEKKVD 369
           E+ ++K+++
Sbjct: 358 ERTMQKQIE 366


>gi|194367446|ref|YP_002030056.1| ATP-dependent RNA helicase RhlB [Stenotrophomonas maltophilia
           R551-3]
 gi|194350250|gb|ACF53373.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 574

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 138/375 (36%), Positives = 222/375 (59%), Gaps = 10/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F+   L P +   +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++   
Sbjct: 9   LTFSSFELHPALQAGLEGAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVV 68

Query: 59  --MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             +LT       +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q 
Sbjct: 69  NRLLTRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGSDLGLRFALVYGGVDYDKQR 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L++G DV+I TPGR++D+  + K++ ++  EI V+DEADRM D+GFI  I+ +   +P
Sbjct: 129 EILQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
              TRQTLLFSAT++  + +++   +  P+++ V   + TA  +       +    +K  
Sbjct: 189 ERTTRQTLLFSATLSHRVLELAYEHMNEPQKLVVEAETITAARVRQRIY--FPADDEKIP 246

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  LL   +  +  ++F N K  V  +  SLEK G+ V  + G++ Q+ R  +L+ F++
Sbjct: 247 LLLGLLSRSEGART-MVFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLLNRFQK 305

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++++VA+D+AARGL I  + +V+N+D+P  AE+Y+HRIGRT R G  G A +   +  
Sbjct: 306 GQLEILVATDVAARGLHIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERY 365

Query: 354 IKHIDAIEKLIEKKV 368
              +  IE  IE+K+
Sbjct: 366 AMGLPDIEAYIEQKI 380


>gi|190576089|ref|YP_001973934.1| ATP-dependent RNA helicase RhlB [Stenotrophomonas maltophilia
           K279a]
 gi|190014011|emb|CAQ47651.1| putative ATP-dependent RNA helicase [Stenotrophomonas maltophilia
           K279a]
          Length = 574

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 138/375 (36%), Positives = 222/375 (59%), Gaps = 10/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F+   L P +   +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++   
Sbjct: 9   LTFSSFELHPALQAGLEGAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVV 68

Query: 59  --MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             +LT       +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q 
Sbjct: 69  NRLLTRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGSDLGLRFALVYGGVDYDKQR 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L++G DV+I TPGR++D+  + K++ ++  EI V+DEADRM D+GFI  I+ +   +P
Sbjct: 129 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
              TRQTLLFSAT++  + +++   +  P+++ V   + TA  +       +    +K  
Sbjct: 189 ERTTRQTLLFSATLSHRVLELAYEHMNEPQKLVVEAETITAARVRQRIY--FPADDEKIP 246

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  LL   +  +  ++F N K  V  +  SLEK G+ V  + G++ Q+ R  +L+ F++
Sbjct: 247 LLLGLLSRSEGART-MVFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLLNRFQK 305

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++++VA+D+AARGL I  + +V+N+D+P  AE+Y+HRIGRT R G  G A +   +  
Sbjct: 306 GQLEILVATDVAARGLHIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERY 365

Query: 354 IKHIDAIEKLIEKKV 368
              +  IE  IE+K+
Sbjct: 366 AMGLPDIEAYIEQKI 380


>gi|52082502|ref|YP_081293.1| ATP-dependent RNA helicase [Bacillus licheniformis ATCC 14580]
 gi|52787898|ref|YP_093727.1| DeaD [Bacillus licheniformis ATCC 14580]
 gi|52005713|gb|AAU25655.1| ATP-dependent RNA helicase [Bacillus licheniformis ATCC 14580]
 gi|52350400|gb|AAU43034.1| DeaD [Bacillus licheniformis ATCC 14580]
          Length = 481

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 131/362 (36%), Positives = 211/362 (58%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS  +  A+   GY +PT +Q + IP VL++ DV   ++TG+GKTA+F +P+  +
Sbjct: 6   FRDYALSGDITKALDHLGYKEPTAVQSEVIPAVLKKRDVVVKSRTGSGKTAAFGIPLCEL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E    +   P+ L+L PTRELAAQV ++    G+   +  A + G   FE Q  +L++ 
Sbjct: 66  TEWEENK---PQALVLTPTRELAAQVKEDLTNIGRYKRIKAAAVYGKSSFERQKTELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++  PGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  +  I   +P  R T+L
Sbjct: 123 CHIVVGPPGRVLDHIEKGTLPLEKLKYLVIDEADEMLNMGFIDQVGAIIRHLPEERLTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT  ++++ +S  ++++P +IE+    +T   IEH  +      +   +LL  L   +
Sbjct: 183 FSATFPEDVEHLSLQYMKDPLKIEIKAGGTTTADIEHQLI--IVNENDPFSLLVDLFIVE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + I+FC  ++ V  L   L   G+    IHG + Q  R  +++ F+ G  + ++A+
Sbjct: 241 NP-DSCIVFCRTQEQVNELQWRLSVLGYPCEKIHGGMPQEDRFAVMNRFRRGAFRYLIAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+++P   E+Y+HR GRTGRAG  GKA TL +  + + I  IE 
Sbjct: 300 DVAARGIDIENITHVINYELPLDQESYVHRTGRTGRAGSRGKAITLASAREKRMIADIED 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|327404226|ref|YP_004345064.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327319734|gb|AEA44226.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 379

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 144/382 (37%), Positives = 222/382 (58%), Gaps = 7/382 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  GLSP ++ A+ +  Y KPTPIQ   IP +L   DV GIA TG+GKTAS+VLP+L
Sbjct: 1   MSFSSFGLSPFLLQALTEMTYEKPTPIQELAIPAILTGKDVLGIAPTGSGKTASYVLPVL 60

Query: 61  TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNK 117
             L K  +A+ R  ++LIL PTRELA QV + F+ +       L V  + GG+    Q K
Sbjct: 61  AQLSKVEKAKNRHIQSLILVPTRELAIQVEEVFKSFAHKLPEPLKVKAVYGGVSINPQMK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +  G  +LI TPGR+++      + ++ ++ LV+DEAD++L++ F   ++ I S +P  
Sbjct: 121 AM-MGVSILIATPGRLIELAESNAIHLSTLKSLVLDEADKLLNLDFQEEMKRILSWIPKK 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT+ D++ ++++  L  P  +++     + E I+    A      +K  LL+ 
Sbjct: 180 RQNLLFSATLNDKVSEITQLILHEPIVLKIENEEDSVELIQQT--AYRVSDERKGPLLRY 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++S++ MK  +IF +       +   L K      AIH    Q +R K+L NFK G ++
Sbjct: 238 LIRSRN-MKQVLIFTSSTFKADQVVEKLRKNNIDAQAIHSKKSQDARNKVLRNFKAGHLK 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+DL +RG+DI  +  V N+++P   ++Y+HRIGRTGRA   G+A T V  ED  H 
Sbjct: 297 VLVATDLISRGIDIEFLPFVINYELPRSPKDYVHRIGRTGRAESTGEALTFVTPEDEHHF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLN 379
             I+K + K+V +   D   LN
Sbjct: 357 KIIQKKMGKQVPFEETDGLDLN 378


>gi|296813451|ref|XP_002847063.1| ATP-dependent RNA helicase DBP2 [Arthroderma otae CBS 113480]
 gi|238842319|gb|EEQ31981.1| ATP-dependent RNA helicase DBP2 [Arthroderma otae CBS 113480]
          Length = 417

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 132/356 (37%), Positives = 208/356 (58%), Gaps = 12/356 (3%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRARVRMP 73
           G+VKPTPIQ +  P+ L   DV GIA+TG+GKT ++ LP +       +L  G      P
Sbjct: 8   GFVKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDG----P 63

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
             L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L RG +V I TPGR+
Sbjct: 64  IVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQIRDLTRGVEVCIATPGRL 123

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193
           +D    G+  +  +  LV+DEADRMLDMGF P I+ I   +   RQT ++SAT   ++++
Sbjct: 124 IDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTCMWSATWPKDVRQ 183

Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI-IFC 252
           ++ +FLQ+  ++ + +   +A       V   +++ K+  +++ L +  +  K+ + IF 
Sbjct: 184 LANDFLQDYIQVYIGSQDLSANHRITQIVEVVSEFEKRDRMIKHLERIMEDKKSKVLIFT 243

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             K+   ++   L + G+   +IHG+  Q  R  +L+ FK G   +MVA+D+A+RG+D+ 
Sbjct: 244 GTKRVADDITRFLRQDGWPALSIHGDKQQSERDWVLNEFKSGKSPIMVATDVASRGIDVR 303

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI-DAIEKLIEKK 367
           D+ HV N D PN +E+Y+HRIGRTGRAG +G A T+   E+ K   D ++ L E K
Sbjct: 304 DITHVLNHDYPNNSEDYVHRIGRTGRAGANGTAITMFTTENAKQARDLVKILTESK 359


>gi|309778667|ref|ZP_07673444.1| ATP-independent RNA helicase DbpA [Ralstonia sp. 5_7_47FAA]
 gi|308922582|gb|EFP68202.1| ATP-independent RNA helicase DbpA [Ralstonia sp. 5_7_47FAA]
          Length = 471

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 147/392 (37%), Positives = 223/392 (56%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P V+  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 16  FSTLALAPAVLTNLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFALALLAR 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+     V+    ++L PTRELA QVA    +  +   N+ V  L GG P   Q   LE 
Sbjct: 76  LDARSFDVQ---AMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEH 132

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH  RG L +  ++ LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 133 GAHVIVGTPGRIMDHLERGNLGLGALKTLVLDEADRMLDMGFFDDIATVVRQCPADRQTL 192

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K+S+  L+NPK +++      ++  +  +  T +Q   +   + QLL+ 
Sbjct: 193 LFSATYPEGIAKLSQRILRNPKEVKLEERHDDSKIRQRFYEVTDSQ---RLHAVGQLLRH 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   + FCN K+   +L   L  QG    A+HG ++QR R ++L  F   +  ++VA
Sbjct: 250 YRPVST-LAFCNTKQQCRDLLDVLRAQGIHALALHGELEQRERDQVLIQFANRSCSVLVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA  +G A +L + +++  +  IE
Sbjct: 309 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADENGWALSLASMDEMGRVGNIE 368

Query: 362 KLIEKKVDWL------NGDLSSLNPPLEKIDI 387
           + + ++V+W        G+ + L PP+E + I
Sbjct: 369 QALGREVEWHKLDELDTGNDAPLLPPMETLQI 400


>gi|242069203|ref|XP_002449878.1| hypothetical protein SORBIDRAFT_05g024780 [Sorghum bicolor]
 gi|241935721|gb|EES08866.1| hypothetical protein SORBIDRAFT_05g024780 [Sorghum bicolor]
          Length = 688

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 134/371 (36%), Positives = 213/371 (57%), Gaps = 28/371 (7%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE--- 64
           L  K++ AV +AGY KP+PIQ+  IPL LQ+ D   +A+TG+GKTA+F LP+L+ +    
Sbjct: 280 LGAKLLRAVDEAGYRKPSPIQMAAIPLGLQQRDAIAVAETGSGKTAAFALPLLSYVAGLP 339

Query: 65  --KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNKKL 119
                 R   P  L++ PTREL+ Q+A+   +  +   + V  + GG        Q++++
Sbjct: 340 PITDENRHDGPYALVMVPTRELSEQIAEETARLARYLGVRVVPVFGGGSEKTIAEQSERI 399

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-- 177
           ++G +V++ TPGR+LD   R  +++N    +V+DEADRM+DMGF P + ++ +++P +  
Sbjct: 400 QKGCEVVVATPGRLLDLLERRYVVLNQCNYVVLDEADRMIDMGFEPQVASVLAVMPSSNL 459

Query: 178 ---------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
                          R T +FSATM   +++++  +L+NP  + + TP    E I    +
Sbjct: 460 KPQNEDEELDEKKVYRTTFMFSATMPPAVERLARTYLRNPVVVTIGTPGKATELITQNVM 519

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
               + S+K   L +LL+     K  I+FCN KK      + L+  GF V A+HGN+ Q 
Sbjct: 520 ML--KESEKMPQLHRLLRDLRD-KTVIVFCNTKKTTDWCFNELKNAGFGVTALHGNLTQA 576

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R   L  F+     ++VAS++AARG++IPDV HV N+D+P+    YIH IGRTGRAG+ 
Sbjct: 577 ERKASLDGFRNRQFNVLVASEVAARGINIPDVAHVINYDMPSSINKYIHCIGRTGRAGKK 636

Query: 343 GKAFTLVAKED 353
           G A + +  E+
Sbjct: 637 GVATSFLTLEN 647


>gi|329954895|ref|ZP_08295912.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
 gi|328526999|gb|EGF54010.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
          Length = 499

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 130/371 (35%), Positives = 222/371 (59%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ K+IP++L+  D+  +AQTGTGKTA+++LP+L
Sbjct: 65  MKFSELKLNDNVLEALDAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPIL 124

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             L +G         +++ PTRELA Q+    E +     ++   + GG   + FE Q +
Sbjct: 125 NKLSEGGHPEDSINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKR 184

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 185 GLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKYLPKE 244

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++++ L +P  +++       + ++  +V    Q   K  +++ 
Sbjct: 245 RQTIMFSATMPAKIQQLAQSILNDPAEVKLAVSKPAEKIVQAAYVCYENQ---KLGIIRS 301

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   Q T +  IIF + K  V  +  +L++   +V  +H +++Q  R +++  FK G + 
Sbjct: 302 LFAEQ-TPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRVN 360

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V +++  + 
Sbjct: 361 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNF 420

Query: 358 DAIEKLIEKKV 368
             IE  +EK++
Sbjct: 421 KGIENFLEKEI 431


>gi|326934003|ref|XP_003213086.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Meleagris
           gallopavo]
          Length = 944

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 138/395 (34%), Positives = 223/395 (56%), Gaps = 22/395 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ +   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIH 314

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQA 370

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRP 430

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +    V  +     K   L 
Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQ-IVEIFPSGPSKWNWLT 489

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + L    +  + ++F  +K N   L ++L+++  ++  +HG++DQ  R K++S FK+  I
Sbjct: 490 RRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGI 549

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED--- 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D   
Sbjct: 550 PILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNF 609

Query: 354 ----IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
               +++++   + + K++     DL+  NP   K
Sbjct: 610 AGDLVRNLEGANQHVSKELL----DLAMQNPWFRK 640


>gi|170576579|ref|XP_001893687.1| RNA-dependent helicase [Brugia malayi]
 gi|158600176|gb|EDP37484.1| RNA-dependent helicase, putative [Brugia malayi]
          Length = 553

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 137/371 (36%), Positives = 212/371 (57%), Gaps = 8/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            DF + G  P+V+  +L A + KPT IQ  + P+ L   D+  IA+TG+GKT +F+LP +
Sbjct: 129 FDFKEAGF-PQVLTDMLFANFQKPTVIQSISWPIALSGRDMVSIAKTGSGKTFAFILPAI 187

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             TI +  R   + P  L+L PTRELA QV +  + Y +  +L++  L GG P   Q + 
Sbjct: 188 VHTINQPPRGHQKSPSVLVLLPTRELAQQVEEVAKDYCRATDLSITCLFGGAPKATQARD 247

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG D++I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ + S +   R
Sbjct: 248 LERGVDIIIATPGRLMDFLEIGKTDLRRCTYLVLDEADRMLDMGFEPQIRKVVSQIRPDR 307

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALL 235
           QTL+FSAT   +++K++ +FL +   + V +   +A       V    + +K+    A+L
Sbjct: 308 QTLMFSATWPKDVRKLAMDFLTDAAHLNVGSLELSANHNITQIVEIIDESNKQQRLMAIL 367

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             ++  +D     IIF   K+   +L   + + G+    IHG+  Q  R   LS F+ G 
Sbjct: 368 SDIMNKEDC--KTIIFVETKRKADDLTRWMRRDGWPALCIHGDKGQSERDWALSEFRSGK 425

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +++A+D+AARGLD+ D+ +V NFD  N +E+Y+HRIGRTGR  + G A+T     +  
Sbjct: 426 TPILLATDVAARGLDVDDIKYVINFDYSNNSEDYVHRIGRTGRRDKTGVAYTFFTYANAP 485

Query: 356 HIDAIEKLIEK 366
               + K++E+
Sbjct: 486 KAKDLIKVLEE 496


>gi|170040294|ref|XP_001847939.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167863866|gb|EDS27249.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 818

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 139/379 (36%), Positives = 212/379 (55%), Gaps = 41/379 (10%)

Query: 10  PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI------ 62
           PK V  ++D  GY +PTPIQ + IP+ LQ  D+ GIA+TG+GKT +F++P+L        
Sbjct: 398 PKEVLEIIDKVGYKEPTPIQRQAIPIGLQNRDIIGIAETGSGKTLAFLIPLLNWIQGLPK 457

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E+     + P  +IL PTRELA Q+ +  +K+G+   +   +++GG+  E Q  +L  G
Sbjct: 458 IERQETADQGPYAIILAPTRELAQQIEEETQKFGQPLGIRTVVVVGGLSREEQGFRLRLG 517

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177
            +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P T     
Sbjct: 518 CEIVIATPGRLIDVLENRYLVLNQCTYIVMDEADRMIDMGFEPDVQKILEYMPVTNLKPD 577

Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTA 214
                               RQT++F+ATM   +++++  +L+ P  +    V  P+   
Sbjct: 578 TEEAEDATKLMENFNTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERT 637

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           E I H  + T  +  KK   L ++L S+      IIF NQKK    L   LEK G++ C 
Sbjct: 638 EQIVH--IVTENEKRKK---LMEIL-SRGVEPPCIIFVNQKKGADVLAKGLEKLGYNACT 691

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG   Q  R   L++ K G+  ++VA+D+A RG+DI DV  V N+D+    E+Y HRIG
Sbjct: 692 LHGGKGQEQREYALASLKNGSKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIG 751

Query: 335 RTGRAGRHGKAFTLVAKED 353
           RTGRAG+ G A +   K+D
Sbjct: 752 RTGRAGKTGCAISFCTKDD 770


>gi|290476142|ref|YP_003469042.1| ATP-dependent RNA helicase [Xenorhabdus bovienii SS-2004]
 gi|289175475|emb|CBJ82278.1| ATP-dependent RNA helicase [Xenorhabdus bovienii SS-2004]
          Length = 447

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 135/354 (38%), Positives = 200/354 (56%), Gaps = 4/354 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++  L   ++ A+ + GY +PT IQ + IP  +   DV G A TGTGKTA+++LP+L 
Sbjct: 5   NFSEFELDECLLNALNEKGYERPTAIQAEAIPAAMDGRDVLGSAPTGTGKTAAYLLPVLQ 64

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVA+  + +  + NL VA + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVAEQAQSFAAHTNLDVATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   ++ I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFANDVETIAGETRWRKQT 184

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+  E ++  +E  L +P  I+        + I+  F         K ALL  LL
Sbjct: 185 LLFSATLEGETIRDFAERLLTDPVEIDAEPSRRERKKIQQ-FYYRADNLEHKTALLCHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q  D  K+ I+F  +++ V  +   L K G   C + G + Q  R   +    +G + +M
Sbjct: 244 QQPDVTKS-IVFVRKRERVREIVDYLHKAGIQACFLEGEMVQTKRTDAVKRLNDGRVNVM 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+A+RGLDI ++ HVFNFD+P  A+ Y+HRIGRT RAGR G A  LV   D
Sbjct: 303 VATDVASRGLDIENISHVFNFDLPRTADVYLHRIGRTARAGRKGTAIALVESHD 356


>gi|302823844|ref|XP_002993570.1| hypothetical protein SELMODRAFT_270055 [Selaginella moellendorffii]
 gi|300138582|gb|EFJ05345.1| hypothetical protein SELMODRAFT_270055 [Selaginella moellendorffii]
          Length = 434

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 134/363 (36%), Positives = 209/363 (57%), Gaps = 7/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG+  ++V A    G+  PTPIQ++ +PL LQ  D+ G+AQTG+GKTA+F LP+L  
Sbjct: 10  FGELGVREELVDACTKLGWKAPTPIQVEALPLALQGRDLIGLAQTGSGKTAAFALPILQA 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +   +       +L PTRELA Q+++ FE  G    +    ++GG+    Q   L + 
Sbjct: 70  LFQ---QCHPFFACVLSPTRELAIQISEQFEALGSQIGVRSVAIVGGVSMVDQAVALGKN 126

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++ TPGR+LDH    K   + N++ LV+DEAD++L   F   +  I  +VP  R+T 
Sbjct: 127 PHIVVATPGRLLDHLTNTKGFSLRNVKYLVLDEADKILHNDFEKEVDEILKVVPRERKTF 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT+++ K+    L+NP ++EV++  +TA T++  +V   A++ K C  +   L +
Sbjct: 187 LFSATMTNKVAKLQRACLRNPTKVEVSSKYTTALTLKQEYVFVPAKH-KDCYFV--FLLN 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      ++F     +   L   L   GF    I G + Q  R   L  FK G   L++ 
Sbjct: 244 EMAGSTAMVFTRTCDSTRRLALILRSLGFGAIPISGQMSQSKRSGALLKFKAGDRNLLIC 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR G+A ++V + D+     IE
Sbjct: 304 TDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGRAISIVTQYDVDLYKRIE 363

Query: 362 KLI 364
            LI
Sbjct: 364 DLI 366


>gi|255079330|ref|XP_002503245.1| predicted protein [Micromonas sp. RCC299]
 gi|226518511|gb|ACO64503.1| predicted protein [Micromonas sp. RCC299]
          Length = 605

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 140/365 (38%), Positives = 207/365 (56%), Gaps = 6/365 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L LS  +V A    GY  PTPIQ   +PL L   D+CG A TG+GKTA+F+LP L 
Sbjct: 151 NFTELNLSRPLVKACGALGYASPTPIQAAVVPLALTGRDICGRAVTGSGKTAAFMLPCLE 210

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L +G   V     L+L PTRELA QV    E+  +  ++  AL++GG+    Q   L 
Sbjct: 211 RMLHRGPKPVAATHVLVLVPTRELAVQVHQMTERLAQFTSVRAALVVGGLSANVQATSLR 270

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              +V++ TPGR++DH  N   + + ++  LV+DEADR+L+MGF+  I+ I    P  RQ
Sbjct: 271 SRPEVVVATPGRLIDHVRNTHSVGLEDLATLVLDEADRLLEMGFLEEIREIVRHCPKRRQ 330

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQ 237
           T+LFSAT+T  +++++E  ++NP R+  +   +T  T+  E   +   A   K+  LL  
Sbjct: 331 TMLFSATLTSGVEELAEFSMKNPARLSADQIGTTPGTLTEEVLRLRPGAAAMKEAHLLA- 389

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            + ++   K  IIF   K+    L   +   G   C +HG++ Q  R+  L  F+ G   
Sbjct: 390 -IVARTFTKRCIIFSRTKQQAHRLKIIMGIHGLKACELHGDLTQTQRLAALEEFRTGEAT 448

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            MVA+D+AARGLDI  V  V ++D P    +Y+HR+GRT RAGR G A T + + D K I
Sbjct: 449 HMVATDVAARGLDIAGVDAVVSYDAPRTLASYLHRVGRTARAGRKGTALTFMEESDRKLI 508

Query: 358 DAIEK 362
            A+ K
Sbjct: 509 KAVSK 513


>gi|194752113|ref|XP_001958367.1| GF10884 [Drosophila ananassae]
 gi|190625649|gb|EDV41173.1| GF10884 [Drosophila ananassae]
          Length = 822

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 140/373 (37%), Positives = 213/373 (57%), Gaps = 12/373 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F + G    V+  +   G+ KPT IQ +  P+ +   D+ G+AQTG+GKT ++VLP +
Sbjct: 151 IEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAV 210

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA Q+     ++G N ++    + GG P   
Sbjct: 211 VHINNQPRLERGDG----PIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQ 266

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 267 QARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 326

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQ L++SAT   E+++++E FL N  ++ + + S +A       V    +  K   L
Sbjct: 327 RPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKL 386

Query: 235 LQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           ++ L   S +     IIF   KK V  +  ++ +QG+  CAIHG+  Q+ R  +LS+F+ 
Sbjct: 387 VKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRN 446

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    +
Sbjct: 447 GRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNRGTAYTLFTHSN 506

Query: 354 I-KHIDAIEKLIE 365
             K  D I+ L E
Sbjct: 507 ANKANDLIQVLRE 519


>gi|269987038|gb|EEZ93313.1| DEAD/DEAH box helicase domain protein [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 435

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 142/416 (34%), Positives = 231/416 (55%), Gaps = 18/416 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L  +++ A+ +  + +PT +Q + IPL L+  DV   ++TG+GKTA+FV+P+L  
Sbjct: 2   FDSMNLRKEILTALHEMKFEEPTEVQKQAIPLELEGKDVVVKSKTGSGKTAAFVIPILNS 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +EK   +  M    I+ PTRELA QV +   + G++  L    + GG     Q +++  G
Sbjct: 62  IEKNERQAAM----IITPTRELALQVTEVVREIGRHMQLKAVTIYGGASINYQIREIRNG 117

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+++I TPGR++D   R +L  ++I  LV+DE D MLDMGFI  I+ I S +P  RQT+ 
Sbjct: 118 ANIIIGTPGRLIDLMKRRELNTDSIRFLVLDEVDIMLDMGFIDDIKYILSKLPKKRQTMF 177

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ +E++ ++ N+  NP  + ++    T  TI+H +  + A  S K A L   L  +
Sbjct: 178 FSATIPEEIKHITLNYTNNPINVNIDAGEVTVNTIQHFY--SIASGSDKFATLLAYLNEK 235

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  IIFC  ++N   +   ++  G     +HG + Q  R   L+ FKEG + +++A+
Sbjct: 236 KPEK-AIIFCKTQRNAEKIHSIMQNMGMQAVLMHGGLSQNRREHSLNMFKEG-VNMLIAT 293

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           ++AARGLDI +V  + NFD     + Y+HR+GR+ R G+ GKAFT+    +   +  IE 
Sbjct: 294 NVAARGLDIDNVSDIINFDAETDPKAYVHRVGRSARMGKSGKAFTIFTHGEKYLVYEIEN 353

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
             + K+ +L  DLS+    +        N   K N   +  T    R+ N+SS ++
Sbjct: 354 YAKVKLSYLEFDLSTYRTKM--------NEFYKENGKQEFETAL--RRSNFSSNRN 399


>gi|71896321|ref|NP_001026097.1| ATP-dependent RNA helicase DDX42 [Gallus gallus]
 gi|82194905|sp|Q5F485|DDX42_CHICK RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|60098437|emb|CAH65049.1| hypothetical protein RCJMB04_2e15 [Gallus gallus]
          Length = 944

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 138/395 (34%), Positives = 223/395 (56%), Gaps = 22/395 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   +++  +  + Y +PTPIQ + +P+ +   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 255 FARFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIH 314

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+    +++GK YNL    + GG     Q 
Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQA 370

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V  
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRP 430

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   +++K++ + L +P R+         E +    V  +     K   L 
Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQ-IVEIFPSGPSKWNWLT 489

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + L    +  + ++F  +K N   L ++L+++  ++  +HG++DQ  R K++S FK+  I
Sbjct: 490 RRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGI 549

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED--- 353
            ++VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D   
Sbjct: 550 PILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNF 609

Query: 354 ----IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
               +++++   + + K++     DL+  NP   K
Sbjct: 610 AGDLVRNLEGANQHVSKELL----DLAMQNPWFRK 640


>gi|330794252|ref|XP_003285194.1| hypothetical protein DICPUDRAFT_7134 [Dictyostelium purpureum]
 gi|325084915|gb|EGC38333.1| hypothetical protein DICPUDRAFT_7134 [Dictyostelium purpureum]
          Length = 434

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 140/371 (37%), Positives = 219/371 (59%), Gaps = 9/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LG+ P+++ A   +G+ KP  IQ +TIP  L+  D+ G+AQTG+GKT +FV+P+L
Sbjct: 10  VTFESLGVHPQIIDACYRSGFKKPKEIQRETIPWALKGRDIIGLAQTGSGKTGAFVIPVL 69

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +LE+ +        L + PTRELA Q+A+ F   G    +   +L+GGI    Q+ +L
Sbjct: 70  QKLLEQPQGIF----CLCIAPTRELAFQIAEQFNALGATIGVKTCVLVGGIDSMTQSLQL 125

Query: 120 ERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   ++I +PGRI+ H    K   + +I+  ++DEADR+    F   + NI  ++P  R
Sbjct: 126 AKKPHIIIGSPGRIIFHLENTKGFNLRSIKYFIMDEADRLFGADFEEEVNNILKVIPKER 185

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            T LFSATMT ++ K+    L NP +I+V T   T +T+   ++    +Y K+C L+  L
Sbjct: 186 NTFLFSATMTSKVAKLQRASLVNPVKIQVATKYQTVDTLIQQYLFIPFKY-KECYLVYIL 244

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +    +   IIF +   +   +   L   G +   I+G++DQ  R+  LS FK+GT  +
Sbjct: 245 NELAGNLT--IIFTSTCASSNKVTLMLRNLGLAAIPINGDMDQAKRLASLSKFKQGTKSI 302

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIP V  V N+DVP  ++ YIHR+GRT RAG  G+A TLV + D++   
Sbjct: 303 LVATDVAARGLDIPMVDLVINYDVPTNSKEYIHRVGRTARAGNSGRAITLVTQYDVEMYQ 362

Query: 359 AIEKLIEKKVD 369
            IE +++KK+D
Sbjct: 363 RIEFVLKKKLD 373


>gi|320530074|ref|ZP_08031144.1| DEAD/DEAH box helicase [Selenomonas artemidis F0399]
 gi|320137507|gb|EFW29419.1| DEAD/DEAH box helicase [Selenomonas artemidis F0399]
          Length = 423

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 133/370 (35%), Positives = 214/370 (57%), Gaps = 10/370 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA++G+S  +   + + G   PTP+Q + +P +    DV   AQTGTGKT +F+LP  
Sbjct: 2   MPFAEIGVSEALCTLLKNRGISVPTPVQERAVPAMRAGRDVIAQAQTGTGKTLAFLLP-- 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +LEK + +  + + L++ PTRELA Q+A   E      ++   L+ GG   E Q +KL 
Sbjct: 60  -VLEKIKPQGAVVQALVIAPTRELAIQIARVAEPLAAALSIGTTLVYGGADIERQKEKLR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++I TPGR+LDH  RG L + ++  +V+DEAD ML +GFI  ++ +        Q 
Sbjct: 119 RHPQLVIGTPGRLLDHVRRGTLALGSVNKVVLDEADEMLKLGFIEDVETLLGHTAQDYQL 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ--YSKKCALLQQL 238
            LFSATM + + ++++ F+ NP RI++    +T E IE   ++   +    + CA +   
Sbjct: 179 ALFSATMPERIVQLTKRFMHNPARIKIEGEHTTLENIEQIALSVNEEEKLDRLCASI--- 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +++     ++FC  K+    L  +L  +G+ V A+ GN+ Q  R  +L  F+   +Q+
Sbjct: 236 --NEEAPYLAMVFCATKERTHALMMALAGRGYLVDALSGNLTQTQRAFVLRQFRAAKLQI 293

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+AARGLDI  V HV+N+D+P    +YIHRIGRTGRAG  G+A TLV     + + 
Sbjct: 294 LCATDIAARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGARGRAITLVTARQHEKLR 353

Query: 359 AIEKLIEKKV 368
            IE  +++++
Sbjct: 354 KIESALKERL 363


>gi|330808146|ref|YP_004352608.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376254|gb|AEA67604.1| putative ATP-dependent RNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 448

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 137/370 (37%), Positives = 215/370 (58%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G A+VR+  +TLIL PTRELA Q     E++ +   +   L+ GG  F+ Q   L +
Sbjct: 62  L-IGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+LI TPGR+++  N G L +  +E+LV+DEADRMLDMGF   +Q +       +QT+
Sbjct: 121 VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECTNRQQTM 180

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLL 239
           LFSAT     L+++    L NP+ +++N  S   + T +    A + Q+ ++       L
Sbjct: 181 LFSATTGGSGLREMIAKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQHKEQIV---NWL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +T +  I+F N +     +   L  Q +    +HG  DQ+ R   +   K+G ++++
Sbjct: 238 LANETYEKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + +
Sbjct: 298 VATDVAARGLDVEGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSS 357

Query: 360 IEKLIEKKVD 369
           IE+ +++  +
Sbjct: 358 IERYLKQSFE 367


>gi|195155425|ref|XP_002018605.1| GL25891 [Drosophila persimilis]
 gi|194114758|gb|EDW36801.1| GL25891 [Drosophila persimilis]
          Length = 518

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 217/369 (58%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLGL+  +  A  +  +  P+ IQ + IP+ LQ  DV G+A+TG+GKT +F LP+L
Sbjct: 69  LTWKDLGLNDTLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 128

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      L+L PTRELA Q+ + FE  G    +   +++GG+   AQ  +L 
Sbjct: 129 HALLESPQRYF---ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 185

Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGR++DH    K   +  I+ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 186 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 245

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L++P ++EV+    T E ++  ++    +Y  K   L  +L
Sbjct: 246 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKY--KDVYLVHIL 303

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK     ++
Sbjct: 304 -NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 362

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T+V++ DI+    
Sbjct: 363 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITIVSQYDIELYQR 422

Query: 360 IEKLIEKKV 368
           IE L+ K++
Sbjct: 423 IEHLLGKQL 431


>gi|125987477|ref|XP_001357501.1| GA21647 [Drosophila pseudoobscura pseudoobscura]
 gi|54645833|gb|EAL34571.1| GA21647 [Drosophila pseudoobscura pseudoobscura]
          Length = 518

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 217/369 (58%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLGL+  +  A  +  +  P+ IQ + IP+ LQ  DV G+A+TG+GKT +F LP+L
Sbjct: 69  LTWKDLGLNDTLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 128

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      L+L PTRELA Q+ + FE  G    +   +++GG+   AQ  +L 
Sbjct: 129 HALLESPQRYF---ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 185

Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGR++DH    K   +  I+ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 186 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 245

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L++P ++EV+    T E ++  ++    +Y  K   L  +L
Sbjct: 246 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKY--KDVYLVHIL 303

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK     ++
Sbjct: 304 -NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 362

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T+V++ DI+    
Sbjct: 363 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITIVSQYDIELYQR 422

Query: 360 IEKLIEKKV 368
           IE L+ K++
Sbjct: 423 IEHLLGKQL 431


>gi|320038649|gb|EFW20584.1| ATP-dependent rRNA helicase RRP3 [Coccidioides posadasii str.
           Silveira]
          Length = 474

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 136/376 (36%), Positives = 219/376 (58%), Gaps = 22/376 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+   +  A    GY  PT IQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 50  FKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL-- 107

Query: 63  LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +A +  P++   L+L PTRELA Q++  FE  G   ++  A+++GG+   +Q   L
Sbjct: 108 ----QALMDKPQSMFGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIAL 163

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +++ TPGR+LDH    K   + +++ LV+DEADR+LD+ F P +  I  ++P  R
Sbjct: 164 GKKPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPKER 223

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           +T LFSATM+ +++ +    L NP R+ V  N   + +  +++C +  +         L 
Sbjct: 224 RTYLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQNCLIIPHKHKDIYLIYLL 283

Query: 237 QLLQSQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                Q      I+F    N+ + + NL  +L   GF    +HG + Q +R+  L  F+ 
Sbjct: 284 NEFPGQSV----IVFTRTVNETQRLANLLRAL---GFGAIPLHGQLSQSARLGALGKFRS 336

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            +  ++VA+D+AARGLDIP V  V N+D+P+ ++ YIHR+GRT RAG+ G+AF+LV + D
Sbjct: 337 RSRNILVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYD 396

Query: 354 IKHIDAIEKLIEKKVD 369
           ++    IE  + K++D
Sbjct: 397 VEIWQRIEAALGKELD 412


>gi|154249323|ref|YP_001410148.1| DEAD/DEAH box helicase domain-containing protein [Fervidobacterium
           nodosum Rt17-B1]
 gi|154153259|gb|ABS60491.1| DEAD/DEAH box helicase domain protein [Fervidobacterium nodosum
           Rt17-B1]
          Length = 571

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 141/404 (34%), Positives = 222/404 (54%), Gaps = 8/404 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61
           F D GLS +++ A+   GY KPT IQ   +P  L    D+   AQTGTGKTA+F +P+L 
Sbjct: 20  FEDFGLSEEILLAIQKKGYEKPTEIQKIVLPYALSTDKDLIAQAQTGTGKTAAFGIPLLE 79

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +A  +  + +I+ PTRELA Q+ +  +       + +  L GG   E Q K LE+
Sbjct: 80  RID-FKAN-KFVKAIIVTPTRELALQIFEELKSLKGTKRVKITTLYGGQSLEKQFKDLEK 137

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGRI+DH NR  L ++++E LV+DEADRMLDMGF+  +  I       ++T 
Sbjct: 138 GVDIVVGTPGRIIDHLNRDTLDLSHVEYLVLDEADRMLDMGFLDDVLEIIKRTGENKRTF 197

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+  ++  F++    +       T E  E  +         K  LL +++  
Sbjct: 198 LFSATMPKEIVDIARKFMKEYIHVSTVKDELTTENAEQLYFE--VDEKDKLPLLCRIIDM 255

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                 GI+FC  K  V  +   L   G++   +HG+  Q  R ++L  F++  ++++V 
Sbjct: 256 NPDF-YGIVFCQTKLEVDEISKKLLDLGYNADGLHGDYSQYQRERVLDKFRKKQLRILVT 314

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI  + HV N+ VP   E Y+HRIGRTGRAG+ G A T V ++D  H   ++
Sbjct: 315 TDVAARGIDIDGLTHVINYSVPRDPEYYVHRIGRTGRAGKKGFAITFVTRDDYFHFARVK 374

Query: 362 KLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           +  + K+  D +      LN  LEK+     N  + +N + +++
Sbjct: 375 RFAKAKIIKDSIPQVEDILNRQLEKLLDTLKNAPKVSNELYKRA 418


>gi|303238460|ref|ZP_07324994.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302593858|gb|EFL63572.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 481

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 134/370 (36%), Positives = 218/370 (58%), Gaps = 12/370 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS +++ A+    Y  PT +Q   IP VL+  DV   +QTG+GKTA+F +P+  +
Sbjct: 6   FENYKLSSELLKAIDMLNYKSPTKVQEMVIPAVLEHKDVIVKSQTGSGKTAAFAIPICDL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    +   P+ L++ PTRELA QV ++    G+   L V+ + G   F  Q K+L++ 
Sbjct: 66  VDWDENK---PQVLVITPTRELAIQVKEDIFNLGRFKRLKVSAIYGRSSFYNQEKELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGRI+DH  RG    + I+ L+IDEAD ML MGF+  I++I   +P  R T+L
Sbjct: 123 THVVVGTPGRIIDHLERGTFDTSKIKYLIIDEADEMLSMGFVEQIEDIIGKLPDERTTIL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  ++  + + +++NP   E+   +   + I    V    +  +   L   LL+  
Sbjct: 183 LSATLPKDIAVLCDKYMKNPVYAEIEEENKAIDRI----VQERYEVDENDKL--NLLRDI 236

Query: 243 DTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            T++N    IIFC+ K     L   L K  ++   IHG ++Q  R++++++FK+G  + +
Sbjct: 237 TTLENPDSCIIFCSTKIKTDELFDELAKLNYTCEKIHGGMEQSDRLRVMNDFKQGYFRYL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI D+  V N+D+P   E+Y+HRIGRTGR  R+GKA T V  ++ K++D 
Sbjct: 297 VATDVAARGIDIDDISLVINYDIPQDKESYVHRIGRTGRVDRNGKAITFVTPDESKYLDD 356

Query: 360 IEKLIEKKVD 369
           I K I K+++
Sbjct: 357 IHKYIGKEIE 366


>gi|226306587|ref|YP_002766547.1| ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
 gi|229493625|ref|ZP_04387410.1| ATP-dependent RNA helicase RhlE [Rhodococcus erythropolis SK121]
 gi|226185704|dbj|BAH33808.1| putative ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
 gi|229319586|gb|EEN85422.1| ATP-dependent RNA helicase RhlE [Rhodococcus erythropolis SK121]
          Length = 500

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 139/364 (38%), Positives = 200/364 (54%), Gaps = 8/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+   +V A+  +G   P PIQ  TIP VL   DV G   TG+GKT +F LPML  
Sbjct: 17  FVDLGIPAVMVHALRRSGIDAPFPIQSATIPDVLAGRDVLGRGATGSGKTLAFGLPMLVR 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G ++   PR L+L PTRELA Q+    +       L VA  +GG+P + Q   L RG
Sbjct: 77  LKGGASKRNRPRGLVLAPTRELAIQIHKALDDAATEIGLRVANAVGGVPIKRQADILARG 136

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI TPGR+LD   +  ++++++ I  IDEAD M DMGFI  +  I    P   Q LL
Sbjct: 137 VDLLIATPGRLLDLLEQKSVILDDVVITTIDEADHMADMGFIDEVAKILDTTPKDGQRLL 196

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  ++  +   +L+NP       P +T  T+EH  +  +     K +++  +    
Sbjct: 197 FSATLDGKVDDLVAGYLRNPASHSTAPPVATVSTMEHHLL--FVDRDDKRSVVAHIASRA 254

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F   K  V  L   L   G S  A+HG   Q +R K L++F +GT  ++VA+
Sbjct: 255 GRT---IMFVKTKHGVDRLAQQLHLIGVSAGALHGGKTQNNRTKTLASFSDGTTPVLVAT 311

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+ + DV  V + D P  A++Y+HR GRT RAG  G   T+V  E+    D++EK
Sbjct: 312 DVAARGIHVDDVTLVVHVDPPAEAKDYLHRAGRTARAGESGVVVTIVTDEE---RDSVEK 368

Query: 363 LIEK 366
           L ++
Sbjct: 369 LTKQ 372


>gi|168034811|ref|XP_001769905.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|168034871|ref|XP_001769935.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678811|gb|EDQ65265.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678841|gb|EDQ65295.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 582

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 212/371 (57%), Gaps = 9/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D+ L   ++  V    Y  PTPIQ + +P+ L   D+ G A+TG+GKTA+F LPM+  
Sbjct: 137 FEDMCLHLSIMKDVTFHNYTTPTPIQAQALPVALSGRDLLGCAETGSGKTAAFSLPMIQH 196

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
            + +    R   P  L+L PTRELA Q+    + + ++      A+++GG     Q  +L
Sbjct: 197 CLAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFCRSAEGFRTAIVVGGTNIYEQRSEL 256

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G ++++ TPGR +DH  +G   ++ +  +V+DEADRMLDMGF P I+ +   +P   Q
Sbjct: 257 RAGVEIVVATPGRFIDHLQQGNSSLSRVSYVVLDEADRMLDMGFEPQIREVMRSLPKKHQ 316

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQ--YSKKCALLQ 236
           TLLFSATM +E++ +++ +L NP R++V   SS TA   ++    T  +   S    L+ 
Sbjct: 317 TLLFSATMPEEIEALAQEYLDNPIRVKVGRVSSPTANVTQNLEKITEKEKIESLLALLVD 376

Query: 237 QLLQSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +  QS DT +     I+F  +K     +  +L +QG    A+HG   Q  R   L +F++
Sbjct: 377 EHSQSLDTNQPPPLTIVFVERKARCDEVTDALVEQGLKATALHGGRSQSEREAALRDFRK 436

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           GT  ++VA+D+A+RGLD+  V HV N D+P   E+Y+HRIGRTGRAG  G+A +   + D
Sbjct: 437 GTTNILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGASGRATSFYTERD 496

Query: 354 IKHIDAIEKLI 364
           +  +  I + I
Sbjct: 497 MFLVAQIRRAI 507


>gi|50954624|ref|YP_061912.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951106|gb|AAT88807.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 491

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 213/368 (57%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L +   +V A+   G  +P PIQ +TIPL L   D+ G A+TGTGKT  F LP++
Sbjct: 1   MTFSELNIDQDMVDALAAKGITEPFPIQTQTIPLALTGQDIIGQAKTGTGKTFGFGLPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  G       + L++ PTRELA QV ++ E+   N   ++A + GG  +E Q  +L+
Sbjct: 61  QRL--GADPEPGVQALVVVPTRELAVQVYEDLEQAASNRPTSIAAIYGGKAYEGQIAQLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGR+LD   +  L ++ +  +V+DEAD+MLD+GF+  I+ + +  P TR T
Sbjct: 119 AGAQVVVGTPGRLLDLAGQRLLNLSTVREMVLDEADKMLDLGFLSDIEKLFAQTPATRHT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTP--SSTAETIEHCFVATYAQYS-KKCALLQQ 237
           +LFSATM   +  ++  F+  P  I    P        I+H     Y  +S  K  ++ +
Sbjct: 179 MLFSATMPGPIVALARRFMTRPIHIRATDPDEGQIQANIKHLV---YRAHSLDKDEVVAR 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +LQS+   K  +IF   K++   L   L  +GF+  A+HG+++Q  R + ++ FK G   
Sbjct: 236 ILQSEGRGKT-VIFTRTKRSAAKLMEELNDRGFNAAAVHGDLNQEQRERAMAAFKAGKKD 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARG+D+ DV HV N  +P+  + Y+HR GRTGRAG+ G A T V  ED+   
Sbjct: 295 VLIATDVAARGIDVDDVTHVINHTIPDDEKTYLHRAGRTGRAGKSGIAVTFVDWEDLHKW 354

Query: 358 DAIEKLIE 365
             I + +E
Sbjct: 355 ALINRALE 362


>gi|296273792|ref|YP_003656423.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296097966|gb|ADG93916.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 434

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 140/381 (36%), Positives = 219/381 (57%), Gaps = 7/381 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L  +++ A+ + GY KPT +Q K IP++L+  DV   AQ+GTGKTA+FVLP+L  
Sbjct: 4   FNNIKLCSEILKALEEEGYEKPTEVQEKVIPVLLKNSDVIATAQSGTGKTAAFVLPILQK 63

Query: 63  L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    +      R+ R+LIL PTRELA Q+  +   YG+  ++   +++GG+  + Q +K
Sbjct: 64  LFETQDNDSTNKRVLRSLILVPTRELAKQIEKSISHYGRYLDIKQTIVVGGLSHKEQIRK 123

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +  G DVL+ TPGR++DH     + +++I  +V+DEAD ML+MGF+  I+ I S    TR
Sbjct: 124 INAGIDVLVATPGRLIDHIKTKSVNLSSINNIVLDEADTMLEMGFLKDIELIFSQCAKTR 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
              +FSAT+   ++K+++ FL  P  IEV++  S  + IE           KK   L  L
Sbjct: 184 HIGMFSATINQNIKKLAKEFLHKPVVIEVSSQRSAVDIIEQQIY--LMDEDKKIEFLSYL 241

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S++  +  ++F N K     +       G     IHG+I Q  R + L  FK  ++++
Sbjct: 242 IGSEN-WEQVLVFVNTKAKADEITEQFNLDGLKTACIHGDIKQPVRARALEGFKSKSLRV 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + +V NF++P    +Y HRIGRTGRAG  G A TL+  ++   + 
Sbjct: 301 LVATDIAARGIDIELLPNVVNFELPETTVDYTHRIGRTGRAGNPGVATTLLCVKEYVQMA 360

Query: 359 AIEKLIEKKVDWLNGDLSSLN 379
            IEK +   +  L  D   LN
Sbjct: 361 EIEKELIINIPRLTHDEYELN 381


>gi|327481375|gb|AEA84685.1| ATP-dependent RNA helicase SrmB [Pseudomonas stutzeri DSM 4166]
          Length = 443

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 214/369 (57%), Gaps = 5/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L  +++ AV +  +V+PTP+Q+  IP  L+  D+   AQTG+GKTA+FVLPML  
Sbjct: 2   FDQFALHERLLKAVAELKFVEPTPVQVAAIPPALEGRDLRVTAQTGSGKTAAFVLPMLNR 61

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G A+ R+  R LIL PTRELA Q     E++ +   +   L+ GG  F+ Q   L +
Sbjct: 62  L-IGDAQPRVDVRALILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DVLI TPGR+++H N G L++ ++E+LVIDEADRMLDMGF   +Q +       +QTL
Sbjct: 121 VPDVLIGTPGRLIEHLNAGNLILKDVEVLVIDEADRMLDMGFAEDMQRLVGECEKRQQTL 180

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT     L+++    L +P  +++N  S   E+     + T    + K  L+  LL 
Sbjct: 181 LFSATSGGAGLREMVAKVLNDPLHLQLNRVSELNESTRQQII-TADDPAHKEKLVHWLL- 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +T +  +IF N +     L   L      V  +HG  DQ+ R   +   K+G ++++V
Sbjct: 239 ANETYQKAVIFTNTRAQADRLYGHLVAGDIKVFVLHGEKDQKERKLAIERLKQGGVKVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + +I
Sbjct: 299 ATDVAARGLDIEGMDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHNDWNLMSSI 358

Query: 361 EKLIEKKVD 369
           E+ ++++ +
Sbjct: 359 ERYLKQRFE 367


>gi|86742488|ref|YP_482888.1| DEAD/DEAH box helicase-like protein [Frankia sp. CcI3]
 gi|86569350|gb|ABD13159.1| DEAD/DEAH box helicase-like [Frankia sp. CcI3]
          Length = 649

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 207/371 (55%), Gaps = 8/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA+LG+  + V A+ +AG V   PIQ  T+PL L R+D+ G A+TGTGKT +F +P++ T
Sbjct: 87  FAELGVRAETVSALTEAGIVHAFPIQELTLPLALARNDIIGQARTGTGKTLAFGVPVVQT 146

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L         P+ L++ PTREL  QV  +  + G    L V  + GG  +E Q   L  
Sbjct: 147 VLAAKEGADGRPQALVVVPTRELCVQVTADVTRAGARRGLRVLSVYGGRAYEPQLSALRA 206

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR+LD   +  L +  +  LV+DEAD MLD+GF+P ++ I S +P  RQT+
Sbjct: 207 GVDIVVGTPGRLLDLARQHVLDLAGVGTLVLDEADEMLDLGFLPDVERIMSQLPTERQTM 266

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPS---STAETIEHCFVATYAQYSKKCALLQQL 238
           LFSATM   +  ++  F++ P  +    P    +   T +H F    A    K  +L ++
Sbjct: 267 LFSATMPGPVISLARRFMKRPVHVRAEQPDEGRTVPTTRQHVF---RAHALDKMEVLARV 323

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ+       ++F   ++    +   L K+GF+  A+HG++ Q  R + L  F+ G + +
Sbjct: 324 LQAGG-RGLAMVFVRTRRTADKVAEDLAKRGFAAAAVHGDLGQGQREQALRAFRSGKVDV 382

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  V HV N+  P     Y+HRIGRTGRAG  G A T V  +D+    
Sbjct: 383 LVATDVAARGIDINGVTHVVNYQCPEDENVYLHRIGRTGRAGESGVAITFVDWDDLPRWT 442

Query: 359 AIEKLIEKKVD 369
            + K +    D
Sbjct: 443 LVNKALALPFD 453


>gi|332653730|ref|ZP_08419474.1| ATP-dependent RNA helicase DeaD [Ruminococcaceae bacterium D16]
 gi|332516816|gb|EGJ46421.1| ATP-dependent RNA helicase DeaD [Ruminococcaceae bacterium D16]
          Length = 391

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 204/349 (58%), Gaps = 7/349 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +ADLGLSP+++ A+   GYV+ TP+Q  +IP  ++  DV   A TGTGKT +F +PM+  
Sbjct: 14  YADLGLSPELMRAIDKKGYVQATPVQGGSIPYFMEYKDVIAKAPTGTGKTFAFGIPMVEH 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLER 121
           ++      R  + L+L PTRELA Q+ D           +    L GG P + Q  +L++
Sbjct: 74  ID---PESRDVQGLVLAPTRELAIQIRDELRDLCAFKEGVRTVCLYGGQPIDKQITQLKK 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++DH  R  + ++ ++ +V+DEADRMLDMGFI  +  I  L+P  R   
Sbjct: 131 DPQIVVATPGRLMDHVKRRTVRLDKVQTVVLDEADRMLDMGFIKDVTRILDLMPKRRNLG 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT++ E+  +S  + ++P  I V         I    +    + ++K   + +L++ 
Sbjct: 191 LFSATISREVMDISWVYQRDPVEITVRADEENKPDITQYRLD--VERNEKVDTMVRLME- 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I FCN K     L   L  +  +  AIHG+I QR R K L  F+EG ++++ A
Sbjct: 248 MGGYDRVIAFCNTKNMTDRLAGLLRMRHITCEAIHGDIQQRVREKTLQKFREGQLRVLAA 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           +D+AARGLDI DV  VFN+DVP+  E YIHRIGRTGRA RHG AF+LV+
Sbjct: 308 TDVAARGLDIDDVDAVFNYDVPDENEYYIHRIGRTGRAKRHGVAFSLVS 356


>gi|227112916|ref|ZP_03826572.1| ATP-dependent RNA helicase SrmB [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 441

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 134/354 (37%), Positives = 203/354 (57%), Gaps = 4/354 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L L   ++ A+ D GY +PT IQ + IP  ++  DV G A TGTGKTA+++LP+L 
Sbjct: 5   NFSELDLDESLLDALRDMGYERPTVIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQ 64

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++  R +   PR LIL PTRELA QVAD    +  + +L +A + GG+ +    +   
Sbjct: 65  HLIDFPRKKSGPPRILILTPTRELAMQVADQARAFAAHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184

Query: 181 LLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT+  D ++  +E  L  P  IE +      + I   +         K ALL   L
Sbjct: 185 MLFSATLEGDAIKDFAERLLNEPVEIESDPSRRERKKILQWYYRA-DDLKHKTALLCHQL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  ++ IIF  +++ V  L   L + G + C + G + Q  R + +    +G + ++
Sbjct: 244 KQPDVTRS-IIFVRKRERVHELVAWLREAGINSCYLEGEMVQAKRNEAIKRLSDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+AARG+DI DV HVFNFD+P  A+ Y+HRIGRTGRAGR G A + V   D
Sbjct: 303 VATDIAARGIDIDDVSHVFNFDLPRTADTYLHRIGRTGRAGRKGCAISFVEAHD 356


>gi|195588318|ref|XP_002083905.1| GD13105 [Drosophila simulans]
 gi|194195914|gb|EDX09490.1| GD13105 [Drosophila simulans]
          Length = 814

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 140/373 (37%), Positives = 213/373 (57%), Gaps = 12/373 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F + G    V+  +   G+ KPT IQ +  P+ +   D+ G+AQTG+GKT ++VLP +
Sbjct: 154 IEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAV 213

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA Q+     ++G N ++    + GG P   
Sbjct: 214 VHINNQPRLERGDG----PIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQ 269

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 270 QARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 329

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQ L++SAT   E+++++E FL N  ++ + + S +A       V    +  K   L
Sbjct: 330 RPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKL 389

Query: 235 LQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           ++ L   S +     IIF   KK V  +  ++ +QG+  CAIHG+  Q+ R  +LS+F+ 
Sbjct: 390 IKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRN 449

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    +
Sbjct: 450 GRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSN 509

Query: 354 I-KHIDAIEKLIE 365
             K  D I+ L E
Sbjct: 510 ANKANDLIQVLRE 522


>gi|195443116|ref|XP_002069285.1| GK21047 [Drosophila willistoni]
 gi|194165370|gb|EDW80271.1| GK21047 [Drosophila willistoni]
          Length = 507

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 217/369 (58%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLGL+  +  A  +  +  P+ IQ + IP+ LQ  DV G+A+TG+GKT +F LP+L
Sbjct: 55  LTWKDLGLNETLCQACEELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPIL 114

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      L+L PTRELA Q+ + FE  G    +   +++GG+   AQ  +L 
Sbjct: 115 QALLENPQRYF---ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 171

Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGR++DH    K   +  I+ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 172 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 231

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L++P ++EV+    T E ++  ++    +Y  K   L  +L
Sbjct: 232 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKY--KDVYLVHIL 289

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK     ++
Sbjct: 290 -NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 348

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR G+A T+V++ DI+    
Sbjct: 349 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGRAITMVSQYDIELYQR 408

Query: 360 IEKLIEKKV 368
           IE L+ K++
Sbjct: 409 IEHLLGKQL 417


>gi|302782918|ref|XP_002973232.1| hypothetical protein SELMODRAFT_267628 [Selaginella moellendorffii]
 gi|300158985|gb|EFJ25606.1| hypothetical protein SELMODRAFT_267628 [Selaginella moellendorffii]
          Length = 597

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 140/373 (37%), Positives = 205/373 (54%), Gaps = 22/373 (5%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL------EKGRARVRMPR 74
           +VKPTP+Q   IP+ L   D+   AQTG+GKT +F  P++  +      ++ R R   P 
Sbjct: 170 FVKPTPVQRHAIPIALAGRDLMACAQTGSGKTLAFCFPIIAGILRDPPRQRPRGRWACPL 229

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            LIL PTREL+AQ+ D  +K+     L V +  GG     Q ++LERG D+L+ TPGR+ 
Sbjct: 230 ALILSPTRELSAQIHDEAKKFAYRTGLKVVVAYGGAQISLQMRELERGVDILVATPGRLH 289

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV----PFTRQTLLFSATMTDE 190
           D   RG++ ++ I+ L +DEADRMLDMGF P I+ I        P  RQT+LFSAT    
Sbjct: 290 DLMERGRVALSMIKYLALDEADRMLDMGFEPQIRKIVETSDMPPPGQRQTMLFSATFPRT 349

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM-KNG- 248
           +Q ++ +FL N   + V    S+ + I         Q ++K +LL  ++  Q  +  NG 
Sbjct: 350 IQSLAADFLHNYIFLAVGRVGSSTDLIVQ--RVERVQEAEKRSLLMDIIHGQKAIGANGQ 407

Query: 249 ----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
               ++F   K+    L   L + GF    IHG+  Q  R + L  F+ G   ++VA+D+
Sbjct: 408 PPLMLVFVETKRGADALEDWLIRSGFPATTIHGDRTQPEREQALRCFRTGMTPILVATDV 467

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           AARGLDIP V HV N+D+P+  ++Y+HRIGRTGRAG  G A      +D      + +L+
Sbjct: 468 AARGLDIPHVAHVINYDLPSDIDDYVHRIGRTGRAGNSGLATAFFTDKDSGLAKPLAELM 527

Query: 365 EKKV----DWLNG 373
           ++       WL G
Sbjct: 528 QESSQEVPSWLEG 540


>gi|302789710|ref|XP_002976623.1| hypothetical protein SELMODRAFT_151274 [Selaginella moellendorffii]
 gi|300155661|gb|EFJ22292.1| hypothetical protein SELMODRAFT_151274 [Selaginella moellendorffii]
          Length = 595

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 140/373 (37%), Positives = 205/373 (54%), Gaps = 22/373 (5%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL------EKGRARVRMPR 74
           +VKPTP+Q   IP+ L   D+   AQTG+GKT +F  P++  +      ++ R R   P 
Sbjct: 168 FVKPTPVQRHAIPIALAGRDLMACAQTGSGKTLAFCFPIIAGILRDPPRQRPRGRWACPL 227

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            LIL PTREL+AQ+ D  +K+     L V +  GG     Q ++LERG D+L+ TPGR+ 
Sbjct: 228 ALILSPTRELSAQIHDEAKKFAYRTGLKVVVAYGGAQISLQMRELERGVDILVATPGRLH 287

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV----PFTRQTLLFSATMTDE 190
           D   RG++ ++ I+ L +DEADRMLDMGF P I+ I        P  RQT+LFSAT    
Sbjct: 288 DLMERGRVALSMIKYLALDEADRMLDMGFEPQIRKIVETSDMPPPGQRQTMLFSATFPRT 347

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM-KNG- 248
           +Q ++ +FL N   + V    S+ + I         Q ++K +LL  ++  Q  +  NG 
Sbjct: 348 IQSLAADFLHNYIFLAVGRVGSSTDLIVQ--RVERVQEAEKRSLLMDIIHGQKAIGANGQ 405

Query: 249 ----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
               ++F   K+    L   L + GF    IHG+  Q  R + L  F+ G   ++VA+D+
Sbjct: 406 PPLMLVFVETKRGADALEDWLIRSGFPATTIHGDRTQPEREQALRCFRTGMTPILVATDV 465

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           AARGLDIP V HV N+D+P+  ++Y+HRIGRTGRAG  G A      +D      + +L+
Sbjct: 466 AARGLDIPHVAHVINYDLPSDIDDYVHRIGRTGRAGNSGLATAFFTDKDSGLAKPLAELM 525

Query: 365 EKKV----DWLNG 373
           ++       WL G
Sbjct: 526 QESSQEVPSWLEG 538


>gi|167855886|ref|ZP_02478636.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis 29755]
 gi|167852974|gb|EDS24238.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis 29755]
          Length = 441

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 213/368 (57%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L LSP+++ A+   GY +PT IQ +TIP  ++  DV G A TGTGKTA+F+LP L
Sbjct: 5   ITFEELDLSPELLQALEKKGYKRPTAIQQETIPPAMEGRDVLGSAPTGTGKTAAFLLPAL 64

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QVA+  E+  +  NL +A + GG+ ++   +  
Sbjct: 65  QHLLDHPRRKPGPPRILILTPTRELAMQVAEQAEELAQFTNLKIATITGGVAYQNHGEVF 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR+  +         ++EIL+ DEADRML MGF    + I +   + + 
Sbjct: 125 NTNQDLVVATPGRLQQYIQEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRWRKY 184

Query: 180 TLLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           T LFSAT+  EL    +E  L +P +I+        + I+  +         K  LL +L
Sbjct: 185 TWLFSATLEGELLVDFAERILNDPVQIDAEPSRRERKKIQQWYYHA-DNLEHKTKLLARL 243

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S+  ++  I+F  ++++V  L  +L K+G     + G + Q  R + ++  K+G + +
Sbjct: 244 I-SEFEIERSIVFVRRRESVRELSETLRKRGIRSTYLEGEMAQTQRNQAIARLKDGVVNV 302

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI DV  V NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D K + 
Sbjct: 303 LVATDVAARGIDIDDVDFVINFDLPYSADTYLHRIGRTARAGKKGSAVSLVEAHDYKLLG 362

Query: 359 AIEKLIEK 366
            I++  E+
Sbjct: 363 KIKRYTEE 370


>gi|145481669|ref|XP_001426857.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393934|emb|CAK59459.1| unnamed protein product [Paramecium tetraurelia]
          Length = 542

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 147/400 (36%), Positives = 228/400 (57%), Gaps = 22/400 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  L L+  +V A  + GY  PT IQ + +PLVL   DV   + TG+GKTA+F+LP++ 
Sbjct: 92  DFQQLKLNKSLVKACHEQGYKYPTKIQAQIVPLVLAGKDVLASSCTGSGKTAAFLLPLMQ 151

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                +++ +  + LI+ PTRELA Q  + F+K  +  + T AL+IG +P + Q  +L R
Sbjct: 152 RFGNTKSQ-KYSKALIVMPTRELALQCFEMFQKLNQFSHCTAALVIGAVPIQQQEAELRR 210

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGRI+D   N   + +++IE+LV+DEADR+++MGF   I+ I    P  RQT
Sbjct: 211 YPDIIIATPGRIVDIMKNSFSIDLSSIEVLVLDEADRLMEMGFEAEIKEILQQTPRDRQT 270

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCALLQQLL 239
           +L SAT+   ++++S   L  P ++ V+     A  ++   +   +   K + A L  LL
Sbjct: 271 VLVSATLKATVKQLSLLALHKPVKVSVDYVDGLAYGLKQYILRIDSDEEKDREATLIALL 330

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLE----KQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q Q  ++  IIF   K +    CH L+     +  S C +HGN+ Q+ R++   +FKEG 
Sbjct: 331 Q-QKFIEKTIIFVRTKHD----CHRLQILLGLKNLSSCELHGNLTQQQRIQAYEDFKEGK 385

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            Q ++A+DLAARGLDI +V  V NF++P     YIHR+GRT R G  G + T+  K+++ 
Sbjct: 386 FQYLLATDLAARGLDIANVKAVINFEIPYETSRYIHRVGRTARIGNQGVSVTICLKKEVS 445

Query: 356 HIDAIEKLIEKKVDWLN----------GDLSSLNPPLEKI 385
               + K  ++K+  LN           DL SL P ++KI
Sbjct: 446 QFKQMIKESKQKLFKLNFNIESIEEIKSDLKSLEPKIKKI 485


>gi|157138136|ref|XP_001664143.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108869558|gb|EAT33783.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 495

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 135/367 (36%), Positives = 216/367 (58%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D+GL   +  A     +  P+ IQ + IPL LQ  DV G+A+TG+GKT +F LP+L  
Sbjct: 59  WEDMGLIDTLCEACRALKWKAPSKIQREAIPLALQGKDVIGLAETGSGKTGAFALPILQA 118

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +   R      +IL PTRELA Q+++ FE  G +  +   +++GG+   +Q   L R 
Sbjct: 119 LLENPQRYF---AVILTPTRELAYQISEQFEALGASIGIKCCVIVGGMDMVSQALHLARK 175

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             ++I TPGR++DH    K   +  ++ LV+DEADR+L++ F   ++ I  ++P  R+T 
Sbjct: 176 PHIIIATPGRLVDHLENTKGFNLKAVKYLVMDEADRILNLDFEVELEKILKVIPRERRTF 235

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT +++K+    L++P ++EV++   T E +   ++   A+Y  K   L  +L +
Sbjct: 236 LFSATMTKKVKKLERASLKDPVKVEVSSKYQTVEKLLQYYIFIPAKY--KDVYLVHIL-N 292

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK    Q++++
Sbjct: 293 ELAGNSFMIFCSTCNNTVRTALMLRALGLAAVPLHGQMSQNKRLAALNKFKGKNRQILIS 352

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    IE
Sbjct: 353 TDVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRAGKAVTFVTQYDVELYQRIE 412

Query: 362 KLIEKKV 368
            L+ KK+
Sbjct: 413 HLLGKKL 419


>gi|238750131|ref|ZP_04611634.1| DEAD/DEAH box helicase domain protein [Yersinia rohdei ATCC 43380]
 gi|238711675|gb|EEQ03890.1| DEAD/DEAH box helicase domain protein [Yersinia rohdei ATCC 43380]
          Length = 619

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 128/338 (37%), Positives = 208/338 (61%), Gaps = 9/338 (2%)

Query: 44  IAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLT 102
           +AQTG+GKTA+F LP+L  ++     ++ P+ L+L PTRELA QVA+    + K+   + 
Sbjct: 1   MAQTGSGKTAAFGLPLLHNIDPA---LKAPQVLVLAPTRELAIQVAEALTSFSKDIKGVN 57

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
           V  L GG  ++ Q + L  G  V++ TPGR+LDH  RG L ++N++ LV+DEAD ML MG
Sbjct: 58  VVALYGGQRYDVQLRALREGPQVVVGTPGRLLDHLKRGTLKLSNLKGLVLDEADEMLRMG 117

Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           FI  ++NI + +P   QT LFSATM + +++++  F++ P+ + + +  +T   I   + 
Sbjct: 118 FIEDVENILAQIPAEHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQVYW 177

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                Y K  AL+ + L+++D     IIF   K   + +  +LE+ G+S  A++G+++Q 
Sbjct: 178 KVGGGYRKNEALV-RFLEAED-FDAAIIFVRTKNATLEVAETLERSGYSSAALNGDMNQA 235

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L   K+G + +++A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR 
Sbjct: 236 LREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 295

Query: 343 GKAFTLVAKEDIKHIDAIE---KLIEKKVDWLNGDLSS 377
           G+A   V   + + +  IE   KL   +V+  N +L S
Sbjct: 296 GRALLFVENRERRLLQNIERTMKLTIPEVELPNAELLS 333


>gi|218550995|ref|YP_002384786.1| ATP-dependent RNA helicase RhlB [Escherichia fergusonii ATCC 35469]
 gi|331675250|ref|ZP_08376001.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA280]
 gi|331685499|ref|ZP_08386083.1| ATP-dependent RNA helicase RhlB [Escherichia coli H299]
 gi|226739539|sp|B7LU75|RHLB_ESCF3 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|218358536|emb|CAQ91184.1| ATP-dependent RNA helicase [Escherichia fergusonii ATCC 35469]
 gi|323964028|gb|EGB59518.1| DEAD/DEAH box helicase [Escherichia coli M863]
 gi|323974364|gb|EGB69492.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
 gi|324111007|gb|EGC04994.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
 gi|325499248|gb|EGC97107.1| ATP-dependent RNA helicase RhlB [Escherichia fergusonii ECD227]
 gi|327250632|gb|EGE62338.1| ATP-dependent RNA helicase rhlB [Escherichia coli STEC_7v]
 gi|331067536|gb|EGI38940.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA280]
 gi|331077200|gb|EGI48414.1| ATP-dependent RNA helicase RhlB [Escherichia coli H299]
          Length = 421

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + IEV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|302789414|ref|XP_002976475.1| hypothetical protein SELMODRAFT_105510 [Selaginella moellendorffii]
 gi|300155513|gb|EFJ22144.1| hypothetical protein SELMODRAFT_105510 [Selaginella moellendorffii]
          Length = 613

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 143/393 (36%), Positives = 219/393 (55%), Gaps = 27/393 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD+ L P +   +    +VKPTP+Q   IP+ L   D+   AQTG+GKTA+F  P++  
Sbjct: 155 FADVDLGPVLNENIRRCKFVKPTPVQKHAIPISLHGRDLMACAQTGSGKTAAFCFPIIAG 214

Query: 63  L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
           +           +G +R   P  LIL PTREL++Q+ D  +K+     + V ++ GG   
Sbjct: 215 ILWNFPPGSRHARG-SRKAFPLALILSPTRELSSQIHDEAKKFAYQTGVKVVVIYGGTSV 273

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           ++Q K+LERG D+L+ TPGR+ D   RG++ ++ +  L +DEADRMLDMGF P I+ I  
Sbjct: 274 QSQLKELERGVDILVATPGRLDDLMQRGRISLSLVRYLALDEADRMLDMGFEPQIRKIVE 333

Query: 173 LV----PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
                 P  RQT+LFSAT   E+Q+++ +FL N   + V    S+ + I       Y   
Sbjct: 334 NTDMPPPGQRQTMLFSATFPREIQRLAADFLYNYIFLAVGRVGSSTDLIVQR--VEYVHD 391

Query: 229 SKKCALLQQLLQSQDTMK-NG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             K ++L  ++ +Q     NG     ++F   K+   +L   L + G S   IHG+  Q 
Sbjct: 392 VDKRSMLMDMIHAQKPNGLNGQLPLILVFVETKRGADSLEDWLIQMGISATTIHGDRTQV 451

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R   L +F+ G   ++VA+D+AARGLDIP V HV N+D+P+  ++Y+HRIGRTGRAG+ 
Sbjct: 452 EREHALRSFRTGVTPILVATDVAARGLDIPHVAHVINYDLPSDIDDYVHRIGRTGRAGKS 511

Query: 343 GKAFTLVAKEDIK----HIDAIEKLIEKKVDWL 371
           G A      +D       +D +++  ++  +WL
Sbjct: 512 GFATAFFTDKDTSLARPLVDLMQEANQQVPEWL 544


>gi|302886563|ref|XP_003042171.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256723080|gb|EEU36458.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 490

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 144/396 (36%), Positives = 223/396 (56%), Gaps = 13/396 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DLG++  +  A     Y  PTPIQ K+IP+ LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 67  FKDLGVNDALCEACEALNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQA 126

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+K +        L+L PTRELA Q+   FE  G   +L  A+++GG+    Q   L +
Sbjct: 127 LLDKPQPLF----GLVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALGK 182

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR++DH  + K   +  ++ L++DEADR+LDM F P I  I   +P  R+T
Sbjct: 183 KPHIIVATPGRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFIPRERRT 242

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            LFSAT++ +++ +    L++P R+ +  N   + +  I+H     + Q  K   L+   
Sbjct: 243 YLFSATLSSKIESLQRASLRDPVRVSISSNKYQTVSTLIQHYMFIPFPQ--KDTYLV--Y 298

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L ++ T K+ I+F         +   L   GF    +HG + Q SR+  L+ F+ GT  +
Sbjct: 299 LVNEHTGKSTIVFTRTVWETQRVAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGTRDI 358

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIP V  V N+D+P  ++ YIHR+GRT RAG+ G A  LV + D++   
Sbjct: 359 LVATDVAARGLDIPKVDVVLNYDMPQDSKTYIHRVGRTARAGKSGVAINLVTQYDLEIYA 418

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
            IE  + KK+     +   +     +I  AQ  HAR
Sbjct: 419 RIEAALGKKLTEYPSEKEEVMTFQSRIQEAQR-HAR 453


>gi|50842805|ref|YP_056032.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
           KPA171202]
 gi|50840407|gb|AAT83074.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
           KPA171202]
 gi|314923604|gb|EFS87435.1| DEAD/DEAH box helicase [Propionibacterium acnes HL001PA1]
 gi|314966442|gb|EFT10541.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2]
 gi|315092781|gb|EFT64757.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1]
 gi|315103751|gb|EFT75727.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2]
 gi|315105899|gb|EFT77875.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1]
 gi|327327264|gb|EGE69040.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL103PA1]
          Length = 561

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 149/415 (35%), Positives = 225/415 (54%), Gaps = 30/415 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L  
Sbjct: 55  FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILLR 114

Query: 61  ----------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                      +  KG+     P+ L++ PTRELA QV+ +           V  + GG+
Sbjct: 115 ITLPGDEGWEELTTKGK-----PQALVMCPTRELALQVSKDISTAASVRGARVLTVYGGV 169

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
            +E+Q   L+ G DV++ TPGR+LD   R  L ++++ I+V+DEAD MLD+GF+P ++N+
Sbjct: 170 GYESQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENL 229

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
               P +RQT+LFSATM   +  ++ + L  P  +      + A   +       A    
Sbjct: 230 IGRTPASRQTMLFSATMPAPIMALARSQLHRPVHVRAEGADTQATVPDTQQFVYQAHPLD 289

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K  ++ ++LQ+ D  K  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  
Sbjct: 290 KIEIIGRILQANDVEKV-IIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKK 348

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV 
Sbjct: 349 FRHGDATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGVAVTLVD 408

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
             D+       KLI K    LN +LS    P+E    + H +   +  IP+ + G
Sbjct: 409 WADVTRW----KLINKA---LNLELSE---PVETYSTSPHLYTDLD--IPEDAQG 451


>gi|294901515|ref|XP_002777392.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239885023|gb|EER09208.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 531

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 142/390 (36%), Positives = 212/390 (54%), Gaps = 19/390 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F   G    ++  +  AG+ KP+PIQ++  P+ +   D+ GIA+TG+GKT +F+LP +  
Sbjct: 119 FEQAGFPDYILHEIKQAGFEKPSPIQVQGWPVAMSGRDMVGIAETGSGKTLAFLLPAIVH 178

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L++G      P  L+L PTRELA Q  +   ++G++  +    + GG P   Q 
Sbjct: 179 INAQPYLQRGDG----PIVLVLAPTRELAVQTQEECNRFGRSSRIRNTCVYGGTPRGPQA 234

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  G ++ I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ ITS V  
Sbjct: 235 RALANGVEICIATPGRLIDFLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKITSQVRP 294

Query: 177 TRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            RQTLL+SAT   E+Q ++ +   + P  I V + S  A      +V     Y KK  L 
Sbjct: 295 DRQTLLWSATWPKEIQGLARDLCREEPVHINVGSMSLRASHNVTQYVDIVQDYEKKDKLK 354

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L +  D  K  +IF + K+   +L   L   G+   +IHG+  Q  R  +L  FK G 
Sbjct: 355 QLLERIMDGSKI-VIFTDTKRAADDLTRMLRMDGWPALSIHGDKKQEERDWVLQEFKSGK 413

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +M+A+D+A+RGLD+ D+ HV N+D P + E+Y+HRIGRTGRAG  G A++    +   
Sbjct: 414 SPIMIATDVASRGLDVKDLRHVINYDFPGQIEDYVHRIGRTGRAGAKGSAYSFFTPDKY- 472

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
                 KL +  +  L     ++ P LEKI
Sbjct: 473 ------KLAKDLIGVLREAEQAVPPELEKI 496


>gi|67624705|ref|XP_668635.1| DEAD box protein [Cryptosporidium hominis TU502]
 gi|54659844|gb|EAL38406.1| DEAD box protein [Cryptosporidium hominis]
          Length = 441

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 213/370 (57%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+  ++  A    G+  PT IQ KTIP+ L+  D+ G+A+TG+GKT SF++P+L  
Sbjct: 30  FASLGVCKELCIACESLGWKTPTEIQKKTIPVALEGRDIIGLAETGSGKTGSFIIPILQR 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +  +     +IL PTREL  Q+++ F  +G   +L +A L+GG+    Q+  L + 
Sbjct: 90  LLDDQVPMY---AVILAPTRELCVQISEQFSAFGSLISLKIATLVGGLDMVMQSLSLAKK 146

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++ +PGR++DH    K   +  I+ LV+DEADR+L M F   +  I    P  R T 
Sbjct: 147 PHIIVASPGRLVDHLENTKGFNIGGIKFLVMDEADRLLSMDFEIALNKIVESSPKNRTTY 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLL 239
           LFSATMT ++ K+ +  L NP +I VNT   TA  +   + F+    ++S    LLQ L 
Sbjct: 207 LFSATMTTKVAKLQKISLSNPIKICVNTKYDTAANLMQYYMFIPFKYKWSYFIGLLQNLG 266

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q       GIIFCN   N        ++ GF+  ++HG + Q  R+  L+ FK    +L+
Sbjct: 267 Q-----YTGIIFCNTCINCRRGDLLAKELGFNSISLHGRMSQSQRLSALNLFKGKQKRLL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
             +++ +RGLDIP V  V NFD+P  +++Y+HR+GRT RAGR G+A ++V + D++    
Sbjct: 322 FTTEVGSRGLDIPHVDFVINFDIPTSSKDYVHRVGRTARAGRSGRAISMVTQYDVETFQR 381

Query: 360 IEKLIEKKVD 369
           IE  + KK+D
Sbjct: 382 IEFALNKKLD 391


>gi|218701307|ref|YP_002408936.1| ATP-dependent RNA helicase RhlB [Escherichia coli IAI39]
 gi|300940005|ref|ZP_07154630.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
 gi|226739532|sp|B7NTG2|RHLB_ECO7I RecName: Full=ATP-dependent RNA helicase rhlB
 gi|218371293|emb|CAR19126.1| ATP-dependent RNA helicase [Escherichia coli IAI39]
 gi|300455138|gb|EFK18631.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
          Length = 421

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + IEV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|269964515|ref|ZP_06178755.1| Superfamily II DNA and RNA helicase [Vibrio alginolyticus 40B]
 gi|269830752|gb|EEZ84971.1| Superfamily II DNA and RNA helicase [Vibrio alginolyticus 40B]
          Length = 403

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 212/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L L   ++ A+ + GY +PT IQ + IP  L   D+   A TGTGKTA+FVLP L  
Sbjct: 5   FAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQY 64

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+    R   P R LIL PTRELA Q+AD      KN  L +  + GG+ ++     L  
Sbjct: 65  LQDFPRRKPGPARILILTPTRELAMQIADQARALAKNTKLNIFTITGGVQYQEHADILAT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+ ++ +  +     IE L++DEADRMLDMGF P +  +++   + +QTL
Sbjct: 125 TQDIVVATPGRLKEYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTL 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLL 239
           LFSAT+  + ++  + + L +P  I+  +P    + I   +  A  A++  K  LL+ ++
Sbjct: 185 LFSATLEGKGVEGFTADLLNDPAEIDAKSPLRERKKIAQWYHRADDAEH--KLELLKHII 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  I+F   ++ +  L   LE        I G + Q  R   +S F++GT+ ++
Sbjct: 243 TQQ--AERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFRDGTVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A ++V   D   +D 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR 360

Query: 360 IEKLIEKKV 368
           + + +++ +
Sbjct: 361 VARYVKEDI 369


>gi|328958182|ref|YP_004375568.1| ATP-dependent RNA helicase [Carnobacterium sp. 17-4]
 gi|328674506|gb|AEB30552.1| ATP-dependent RNA helicase [Carnobacterium sp. 17-4]
          Length = 488

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 134/361 (37%), Positives = 212/361 (58%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  +S +++ A+    Y  PT +Q + IPL L+  DV   +QTG+GKT S+ +P+   
Sbjct: 12  FEEFAISDEIIAALTSLRYFHPTKVQEEVIPLALEGKDVIVESQTGSGKTVSYGVPLC-- 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            EK       P+ L+L PTRELA QV ++    G+   +    + G   F+ Q  +L++ 
Sbjct: 70  -EKVDWEENKPQVLVLVPTRELAIQVKEDLMNVGRLKRVKATAVYGKASFDTQKSELKQK 128

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGR+LDH  +G   +  IE LV+DEAD ML+MGF   ++ I + +P  RQTLL
Sbjct: 129 SHIVVGTPGRVLDHLQKGTFKIEKIECLVLDEADEMLNMGFADQVEAIINFLPAERQTLL 188

Query: 183 FSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSATM  E+++++  +++  K+ I + T   +   I    V    Q  KK   L  LL  
Sbjct: 189 FSATMPKEIERIASFYMKPDKQSIVIETTELSKPKIIQSSVK--VQEDKKEQQLLDLLTV 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++   + +IFCN ++ V NL   L K G  +  IHG + Q  R  ++ +F++G  + +VA
Sbjct: 247 ENA-DSCMIFCNTQEAVNNLYTFLNKAGLPIDKIHGGMVQEDRFSVMDDFRQGRFRYLVA 305

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI +V HV NFDVP   E+++HR GRTGRAG+ G A TLV  ++ K  + ++
Sbjct: 306 TDVAARGIDIENVTHVVNFDVPVEKESFVHRTGRTGRAGKTGMALTLVTPKEEKWWNEVK 365

Query: 362 K 362
           +
Sbjct: 366 E 366


>gi|255009347|ref|ZP_05281473.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313147103|ref|ZP_07809296.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313135870|gb|EFR53230.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
          Length = 418

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 135/371 (36%), Positives = 218/371 (58%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ + IP++L+  D+  +AQTGTGKTA+F+LP+L
Sbjct: 1   MKFSELQLNDNVLEALDAMRFEECTPIQEQAIPVILEGRDLIAVAQTGTGKTAAFLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             L +G         +I+ PTRELA Q+    E +     ++   + GG   I FE Q K
Sbjct: 61  NRLSEGGHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLMLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYEDIMQIVKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++   L NP  +++    + ++  E    A Y  Y  +   + +
Sbjct: 181 RQTIMFSATMPSKIQQLANTILNNPVEVKL----AVSKPAEKIVQAAYVCYENQKLGIVR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L +++  +  IIF + K  V  +  +L+    +V  +H +++Q  R  I+  FK G I 
Sbjct: 237 SLFAEEVPERVIIFASSKLKVKEVAKALKMMKLNVGEMHSDLEQAQREFIMHEFKSGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ +RG+DI D+  V NFDVP+ +E+Y+HRIGRT RA   G A T V +++  + 
Sbjct: 297 ILVATDIVSRGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNF 356

Query: 358 DAIEKLIEKKV 368
             IE  +EK++
Sbjct: 357 KNIENFLEKEI 367


>gi|153871201|ref|ZP_02000433.1| ATP-dependent RNA helicase DbpA [Beggiatoa sp. PS]
 gi|152072333|gb|EDN69567.1| ATP-dependent RNA helicase DbpA [Beggiatoa sp. PS]
          Length = 466

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 147/388 (37%), Positives = 220/388 (56%), Gaps = 15/388 (3%)

Query: 3   FADLGLSPKVVCAVL----DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           F+ L   P++  A+L      GY   TPIQ +++P +L+  DV   A+TG+GKTA+F + 
Sbjct: 6   FSALAFKPEIKQAMLANLESIGYSNMTPIQAESLPSILKNQDVIAQAKTGSGKTAAFGIG 65

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNK 117
           +L+ L     +V+    L+L PTRELA QV     +  +   N+ +  L GG P   Q  
Sbjct: 66  LLSKLNAKNYQVQ---ALVLCPTRELAEQVGQEIRRLARFTQNVKLLSLCGGKPIAPQRD 122

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GA +++ TPGRI DH  +G L + N   LV+DEADRMLDMGF   + +I S +P  
Sbjct: 123 SLAHGAHIIVGTPGRIQDHLRKGSLNLKNAHTLVLDEADRMLDMGFYDDMMDIISYLPKK 182

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT  D + ++S    + P  I+V +  S +E IE  F        +K A++  
Sbjct: 183 RQTLLFSATFPDSIVQMSHAIQKQPVNIQVESLHSYSE-IEQRFYQVKQPQHRKEAVMTL 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   Q   ++ +IFCN K     +   L+K G+   AIHG+++Q+ R ++L  F   +  
Sbjct: 242 LAHYQP--ESTVIFCNTKLQCQEIATQLKKNGYYAIAIHGDLEQKERDQVLLRFANKSCS 299

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI D+  V N+++P   + +IHRIGRTGRAG+ G A +L    +   I
Sbjct: 300 ILVATDVAARGLDINDLQVVINYELPGSQDIHIHRIGRTGRAGKKGLALSLYTASEQHKI 359

Query: 358 DAIEKLIEK--KVDWLNG--DLSSLNPP 381
           +AI ++  +  + D L    D  +L PP
Sbjct: 360 EAIAEIQNQPCRCDALESLEDKGTLRPP 387


>gi|142982611|sp|P0C2N8|DRS1_NEUCR RecName: Full=ATP-dependent RNA helicase drs-1
          Length = 829

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 142/359 (39%), Positives = 207/359 (57%), Gaps = 3/359 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ LS  ++  +   G+ KPTPIQ KTIP+ L   DV G A TG+GKTA+FV+P+L  
Sbjct: 295 FQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVPILER 354

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R +IL PTRELA Q      K   + ++   L +GG+  + Q  +L   
Sbjct: 355 LLYRPKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSLKVQEAELRLR 414

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ IEILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 415 PDVVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLEDGFADELNEILTTLPKSRQTM 474

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMT  + ++    L  P RI  ++   TA T+   FV     + SK+   L  + +
Sbjct: 475 LFSATMTSSVDRLIRAGLNKPVRIMADSQKKTAGTLVQEFVRLRPGRESKREGYLLHICK 534

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  T +  IIF  QKK    +       G S   +HG+++Q  R++ + +F++G +  ++
Sbjct: 535 TIYTERV-IIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQAQRIQSVEDFRDGKVNFLL 593

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G A TL A+ D K + A
Sbjct: 594 ATDLASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKA 652


>gi|21593647|gb|AAM65614.1| replication protein A1-like [Arabidopsis thaliana]
          Length = 456

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 148/418 (35%), Positives = 231/418 (55%), Gaps = 18/418 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+  ++V A    G+  P+ IQ + +P  L+  DV G+AQTG+GKT +F +P+L  
Sbjct: 11  FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70

Query: 63  L---------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
           L         +KGR         +L PTRELA Q+A+ FE  G + +L  A+L GGI   
Sbjct: 71  LLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLFGGIDRM 130

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
            Q   L +   V++ TPGR+ DH +  K   + +++ LV+DEADR+L+  F   +  I  
Sbjct: 131 QQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILE 190

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +P  R+T LFSATMT +++K+    L+NP +IE  +  ST +T++  +    A+Y K C
Sbjct: 191 EIPRERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKY-KDC 249

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L+  L +  ++    +IF         L   L   GF    I G + Q  R+  L+ FK
Sbjct: 250 YLVYILSEMPES--TSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFK 307

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++V +D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR G   +LV + 
Sbjct: 308 AGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQY 367

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           +++    IEKLI KK+     +   +   LE++       A+K + +  K +G  +R+
Sbjct: 368 ELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERV-----AEAKKLSAMNMKESGGRKRR 420


>gi|67539522|ref|XP_663535.1| hypothetical protein AN5931.2 [Aspergillus nidulans FGSC A4]
 gi|74657087|sp|Q5B0J9|DBP2_EMENI RecName: Full=ATP-dependent RNA helicase dbp2
 gi|40738604|gb|EAA57794.1| hypothetical protein AN5931.2 [Aspergillus nidulans FGSC A4]
 gi|259479898|tpe|CBF70542.1| TPA: ATP-dependent RNA helicase dbp2 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5B0J9] [Aspergillus
           nidulans FGSC A4]
          Length = 563

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 209/373 (56%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ KPT IQ +  P+ L   DV GIA+TG+GKT S+ LP +  
Sbjct: 142 FDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVH 201

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 202 INAQPLLAPGDG----PIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQI 257

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 258 RDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 317

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT ++SAT   E+++++ +FL N  ++ + +   +A       V   +++ K+  +++
Sbjct: 318 DRQTCMWSATWPKEVRQLASDFLNNYIQVNIGSMDLSANHRITQIVEVISEFEKRDRMIK 377

Query: 237 QLLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L +  +   N  ++F   K+    +   L + G+   +IHG+  Q+ R  +L+ FK G 
Sbjct: 378 HLEKIMENRGNKCLVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGK 437

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A T    ++ K
Sbjct: 438 SPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNAK 497

Query: 356 HI-DAIEKLIEKK 367
              D +  L E K
Sbjct: 498 QARDLVTILSEAK 510


>gi|239606948|gb|EEQ83935.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis ER-3]
 gi|327350595|gb|EGE79452.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 482

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 135/356 (37%), Positives = 208/356 (58%), Gaps = 10/356 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DLG+   +  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 58  FKDLGIIDSLCEACETLGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQA 117

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++EK ++       LIL PTRELA Q++  FE  G   ++  A+++GG+    Q   L +
Sbjct: 118 LMEKPQSLF----GLILAPTRELAYQISGAFEALGSLISVRCAVIVGGMDMVPQAIALGK 173

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+LDH    K   + N++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 174 KPHIVVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRT 233

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQLL 239
            LFSATM+ +++ +    L NP R+ +++    T  T+   ++    +Y     L    L
Sbjct: 234 YLFSATMSSKVESLQRASLSNPLRVSISSSKYQTVSTLLQSYLFIPHKYKD---LYLVYL 290

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   ++ I+F         L   L   GF    +HG + Q SR+  LS F+  +  ++
Sbjct: 291 LNEYAGQSAIVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSSRLGALSKFRSRSRDIL 350

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           VA+D+AARGLDIP V  V NFD+P  ++ YIHR+GRT RAG+ G AF +V + D++
Sbjct: 351 VATDVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFNIVTQYDLE 406


>gi|16131636|ref|NP_418227.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24115073|ref|NP_709583.1| ATP-dependent RNA helicase RhlB [Shigella flexneri 2a str. 301]
 gi|26250518|ref|NP_756558.1| ATP-dependent RNA helicase RhlB [Escherichia coli CFT073]
 gi|30064925|ref|NP_839096.1| ATP-dependent RNA helicase RhlB [Shigella flexneri 2a str. 2457T]
 gi|74314294|ref|YP_312713.1| ATP-dependent RNA helicase RhlB [Shigella sonnei Ss046]
 gi|89110237|ref|AP_004017.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           W3110]
 gi|91213300|ref|YP_543286.1| ATP-dependent RNA helicase RhlB [Escherichia coli UTI89]
 gi|110644107|ref|YP_671837.1| ATP-dependent RNA helicase RhlB [Escherichia coli 536]
 gi|117626041|ref|YP_859364.1| ATP-dependent RNA helicase RhlB [Escherichia coli APEC O1]
 gi|157156932|ref|YP_001465261.1| ATP-dependent RNA helicase RhlB [Escherichia coli E24377A]
 gi|157163253|ref|YP_001460571.1| ATP-dependent RNA helicase RhlB [Escherichia coli HS]
 gi|170022193|ref|YP_001727147.1| ATP-dependent RNA helicase RhlB [Escherichia coli ATCC 8739]
 gi|170083267|ref|YP_001732587.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188493269|ref|ZP_03000539.1| ATP-dependent RNA helicase RhlB [Escherichia coli 53638]
 gi|191166123|ref|ZP_03027958.1| ATP-dependent RNA helicase RhlB [Escherichia coli B7A]
 gi|191174380|ref|ZP_03035885.1| ATP-dependent RNA helicase RhlB [Escherichia coli F11]
 gi|193066115|ref|ZP_03047170.1| ATP-dependent RNA helicase RhlB [Escherichia coli E22]
 gi|194429768|ref|ZP_03062283.1| ATP-dependent RNA helicase RhlB [Escherichia coli B171]
 gi|194438673|ref|ZP_03070761.1| ATP-dependent RNA helicase RhlB [Escherichia coli 101-1]
 gi|209921253|ref|YP_002295337.1| ATP-dependent RNA helicase RhlB [Escherichia coli SE11]
 gi|215489108|ref|YP_002331539.1| ATP-dependent RNA helicase RhlB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218556342|ref|YP_002389256.1| ATP-dependent RNA helicase RhlB [Escherichia coli IAI1]
 gi|218560846|ref|YP_002393759.1| ATP-dependent RNA helicase RhlB [Escherichia coli S88]
 gi|218692059|ref|YP_002400271.1| ATP-dependent RNA helicase RhlB [Escherichia coli ED1a]
 gi|218697497|ref|YP_002405164.1| ATP-dependent RNA helicase RhlB [Escherichia coli 55989]
 gi|227888637|ref|ZP_04006442.1| ATP-dependent RNA helicase [Escherichia coli 83972]
 gi|237702790|ref|ZP_04533271.1| ATP-dependent RNA helicase rhlB [Escherichia sp. 3_2_53FAA]
 gi|238902861|ref|YP_002928657.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|253775595|ref|YP_003038426.1| ATP-dependent RNA helicase RhlB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038992|ref|ZP_04873043.1| ATP-dependent RNA helicase rhlB [Escherichia sp. 1_1_43]
 gi|254163724|ref|YP_003046832.1| ATP-dependent RNA helicase RhlB [Escherichia coli B str. REL606]
 gi|256021478|ref|ZP_05435343.1| ATP-dependent RNA helicase RhlB [Shigella sp. D9]
 gi|256026128|ref|ZP_05439993.1| ATP-dependent RNA helicase RhlB [Escherichia sp. 4_1_40B]
 gi|260846444|ref|YP_003224222.1| ATP-dependent RNA helicase RhlB [Escherichia coli O103:H2 str.
           12009]
 gi|293417246|ref|ZP_06659871.1| ATP-dependent RNA helicase RhlB [Escherichia coli B185]
 gi|300818751|ref|ZP_07098958.1| DEAD/DEAH box helicase [Escherichia coli MS 107-1]
 gi|300823311|ref|ZP_07103442.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300904031|ref|ZP_07121913.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|300921514|ref|ZP_07137858.1| DEAD/DEAH box helicase [Escherichia coli MS 115-1]
 gi|300923279|ref|ZP_07139328.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|300930057|ref|ZP_07145487.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|300947363|ref|ZP_07161559.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300955218|ref|ZP_07167613.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|300979308|ref|ZP_07174492.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|300985808|ref|ZP_07177600.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|301021429|ref|ZP_07185453.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
 gi|301028992|ref|ZP_07192149.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|301047340|ref|ZP_07194425.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|301303674|ref|ZP_07209795.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|301325469|ref|ZP_07218952.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
 gi|301646155|ref|ZP_07246054.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|306815182|ref|ZP_07449335.1| ATP-dependent RNA helicase RhlB [Escherichia coli NC101]
 gi|307140480|ref|ZP_07499836.1| ATP-dependent RNA helicase RhlB [Escherichia coli H736]
 gi|307313643|ref|ZP_07593263.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|309796280|ref|ZP_07690690.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|312971937|ref|ZP_07786111.1| ATP-dependent RNA helicase rhlB [Escherichia coli 1827-70]
 gi|331644514|ref|ZP_08345634.1| ATP-dependent RNA helicase RhlB [Escherichia coli H736]
 gi|331649605|ref|ZP_08350687.1| ATP-dependent RNA helicase RhlB [Escherichia coli M605]
 gi|331660125|ref|ZP_08361061.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA206]
 gi|331665426|ref|ZP_08366325.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA143]
 gi|331670625|ref|ZP_08371462.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA271]
 gi|331679889|ref|ZP_08380552.1| ATP-dependent RNA helicase RhlB [Escherichia coli H591]
 gi|332282712|ref|ZP_08395125.1| ATP-dependent RNA helicase rhlB [Shigella sp. D9]
 gi|67472034|sp|P0A8J8|RHLB_ECOLI RecName: Full=ATP-dependent RNA helicase rhlB
 gi|67472035|sp|P0A8J9|RHLB_ECOL6 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|67472036|sp|P0A8K0|RHLB_SHIFL RecName: Full=ATP-dependent RNA helicase rhlB
 gi|122421788|sp|Q1R4F9|RHLB_ECOUT RecName: Full=ATP-dependent RNA helicase rhlB
 gi|123147496|sp|Q0TAU3|RHLB_ECOL5 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|123615737|sp|Q3YVI4|RHLB_SHISS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040027|sp|B1IWC0|RHLB_ECOLC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040118|sp|A1AHV0|RHLB_ECOK1 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040119|sp|A8A6N4|RHLB_ECOHS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040120|sp|A7ZTY2|RHLB_ECO24 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739530|sp|B7MGJ1|RHLB_ECO45 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739533|sp|B7M5C7|RHLB_ECO8A RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739534|sp|B1X9Z4|RHLB_ECODH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739536|sp|B6I4B6|RHLB_ECOSE RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797687|sp|B7UMN5|RHLB_ECO27 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797688|sp|B7L8B6|RHLB_ECO55 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797689|sp|B7MR01|RHLB_ECO81 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|259585613|sp|C4ZZ48|RHLB_ECOBW RecName: Full=ATP-dependent RNA helicase rhlB
 gi|26110948|gb|AAN83132.1|AE016769_247 Putative ATP-dependent RNA helicase rhlB [Escherichia coli CFT073]
 gi|1790214|gb|AAC76785.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24054339|gb|AAN45290.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str. 301]
 gi|30043186|gb|AAP18907.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str.
           2457T]
 gi|73857771|gb|AAZ90478.1| putative ATP-dependent RNA helicase [Shigella sonnei Ss046]
 gi|85676268|dbj|BAE77518.1| ATP-dependent RNA helicase [Escherichia coli str. K12 substr.
           W3110]
 gi|91074874|gb|ABE09755.1| putative ATP-dependent RNA helicase [Escherichia coli UTI89]
 gi|110345699|gb|ABG71936.1| putative ATP-dependent RNA helicase RhlB [Escherichia coli 536]
 gi|115515165|gb|ABJ03240.1| ATP-dependent RNA helicase [Escherichia coli APEC O1]
 gi|157068933|gb|ABV08188.1| ATP-dependent RNA helicase RhlB [Escherichia coli HS]
 gi|157078962|gb|ABV18670.1| ATP-dependent RNA helicase RhlB [Escherichia coli E24377A]
 gi|169757121|gb|ACA79820.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
 gi|169891102|gb|ACB04809.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188488468|gb|EDU63571.1| ATP-dependent RNA helicase RhlB [Escherichia coli 53638]
 gi|190903899|gb|EDV63613.1| ATP-dependent RNA helicase RhlB [Escherichia coli B7A]
 gi|190905357|gb|EDV64991.1| ATP-dependent RNA helicase RhlB [Escherichia coli F11]
 gi|192926212|gb|EDV80851.1| ATP-dependent RNA helicase RhlB [Escherichia coli E22]
 gi|194412180|gb|EDX28487.1| ATP-dependent RNA helicase RhlB [Escherichia coli B171]
 gi|194422477|gb|EDX38476.1| ATP-dependent RNA helicase RhlB [Escherichia coli 101-1]
 gi|209914512|dbj|BAG79586.1| RNA helicase [Escherichia coli SE11]
 gi|215267180|emb|CAS11628.1| ATP-dependent RNA helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|218354229|emb|CAV00884.1| ATP-dependent RNA helicase [Escherichia coli 55989]
 gi|218363111|emb|CAR00751.1| ATP-dependent RNA helicase [Escherichia coli IAI1]
 gi|218367615|emb|CAR05399.1| ATP-dependent RNA helicase [Escherichia coli S88]
 gi|218429623|emb|CAR10584.2| ATP-dependent RNA helicase [Escherichia coli ED1a]
 gi|222035482|emb|CAP78227.1| ATP-dependent RNA helicase rhlB [Escherichia coli LF82]
 gi|226838683|gb|EEH70711.1| ATP-dependent RNA helicase rhlB [Escherichia sp. 1_1_43]
 gi|226902961|gb|EEH89220.1| ATP-dependent RNA helicase rhlB [Escherichia sp. 3_2_53FAA]
 gi|227834476|gb|EEJ44942.1| ATP-dependent RNA helicase [Escherichia coli 83972]
 gi|238860046|gb|ACR62044.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|242379313|emb|CAQ34124.1| RhlB, subunit of RhlB, ATP-dependent RNA helicase of the RNA
           degradosome and degradosome [Escherichia coli BL21(DE3)]
 gi|253326639|gb|ACT31241.1| DEAD/DEAH box helicase domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975625|gb|ACT41296.1| ATP-dependent RNA helicase [Escherichia coli B str. REL606]
 gi|253979781|gb|ACT45451.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
 gi|257761591|dbj|BAI33088.1| ATP-dependent RNA helicase RhlB [Escherichia coli O103:H2 str.
           12009]
 gi|260451375|gb|ACX41797.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
 gi|281180829|dbj|BAI57159.1| RNA helicase [Escherichia coli SE15]
 gi|281603170|gb|ADA76154.1| putative Superfamily II DNA and RNA helicase [Shigella flexneri
           2002017]
 gi|284923885|emb|CBG36984.1| ATP-dependent RNA helicase [Escherichia coli 042]
 gi|291431014|gb|EFF04009.1| ATP-dependent RNA helicase RhlB [Escherichia coli B185]
 gi|294489863|gb|ADE88619.1| ATP-dependent RNA helicase RhlB [Escherichia coli IHE3034]
 gi|299878035|gb|EFI86246.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|300300757|gb|EFJ57142.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|300308061|gb|EFJ62581.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|300317872|gb|EFJ67656.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|300398065|gb|EFJ81603.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
 gi|300403983|gb|EFJ87521.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|300407959|gb|EFJ91497.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|300411582|gb|EFJ94892.1| DEAD/DEAH box helicase [Escherichia coli MS 115-1]
 gi|300420424|gb|EFK03735.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|300453025|gb|EFK16645.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300462045|gb|EFK25538.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|300524097|gb|EFK45166.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300528717|gb|EFK49779.1| DEAD/DEAH box helicase [Escherichia coli MS 107-1]
 gi|300840974|gb|EFK68734.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|300847696|gb|EFK75456.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
 gi|301075624|gb|EFK90430.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|305851551|gb|EFM52005.1| ATP-dependent RNA helicase RhlB [Escherichia coli NC101]
 gi|306906624|gb|EFN37136.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|307555908|gb|ADN48683.1| putative ATP-dependent RNA helicase [Escherichia coli ABU 83972]
 gi|307628843|gb|ADN73147.1| ATP-dependent RNA helicase RhlB [Escherichia coli UM146]
 gi|308120162|gb|EFO57424.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|309704219|emb|CBJ03566.1| ATP-dependent RNA helicase [Escherichia coli ETEC H10407]
 gi|310334314|gb|EFQ00519.1| ATP-dependent RNA helicase rhlB [Escherichia coli 1827-70]
 gi|312948335|gb|ADR29162.1| ATP-dependent RNA helicase RhlB [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313647775|gb|EFS12222.1| ATP-dependent RNA helicase rhlB [Shigella flexneri 2a str. 2457T]
 gi|315063076|gb|ADT77403.1| ATP-dependent RNA helicase [Escherichia coli W]
 gi|315138358|dbj|BAJ45517.1| ATP-dependent RNA helicase rhlB [Escherichia coli DH1]
 gi|315254144|gb|EFU34112.1| DEAD/DEAH box helicase [Escherichia coli MS 85-1]
 gi|315284670|gb|EFU44115.1| DEAD/DEAH box helicase [Escherichia coli MS 110-3]
 gi|315293136|gb|EFU52488.1| DEAD/DEAH box helicase [Escherichia coli MS 153-1]
 gi|315296843|gb|EFU56132.1| DEAD/DEAH box helicase [Escherichia coli MS 16-3]
 gi|315618521|gb|EFU99107.1| ATP-dependent RNA helicase rhlB [Escherichia coli 3431]
 gi|320197592|gb|EFW72204.1| ATP-dependent RNA helicase RhlB [Escherichia coli WV_060327]
 gi|320198512|gb|EFW73113.1| ATP-dependent RNA helicase RhlB [Escherichia coli EC4100B]
 gi|323161156|gb|EFZ47074.1| ATP-dependent RNA helicase rhlB [Escherichia coli E128010]
 gi|323173397|gb|EFZ59026.1| ATP-dependent RNA helicase rhlB [Escherichia coli LT-68]
 gi|323182553|gb|EFZ67957.1| ATP-dependent RNA helicase rhlB [Escherichia coli 1357]
 gi|323189497|gb|EFZ74777.1| ATP-dependent RNA helicase rhlB [Escherichia coli RN587/1]
 gi|323380861|gb|ADX53129.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11]
 gi|323934171|gb|EGB30602.1| DEAD/DEAH box helicase [Escherichia coli E1520]
 gi|323943817|gb|EGB39912.1| DEAD/DEAH box helicase [Escherichia coli H120]
 gi|323949335|gb|EGB45225.1| DEAD/DEAH box helicase [Escherichia coli H252]
 gi|323954095|gb|EGB49892.1| DEAD/DEAH box helicase [Escherichia coli H263]
 gi|323959037|gb|EGB54706.1| DEAD/DEAH box helicase [Escherichia coli H489]
 gi|323969378|gb|EGB64677.1| DEAD/DEAH box helicase [Escherichia coli TA007]
 gi|324007445|gb|EGB76664.1| DEAD/DEAH box helicase [Escherichia coli MS 57-2]
 gi|324014725|gb|EGB83944.1| DEAD/DEAH box helicase [Escherichia coli MS 60-1]
 gi|324016171|gb|EGB85390.1| DEAD/DEAH box helicase [Escherichia coli MS 117-3]
 gi|324115756|gb|EGC09691.1| DEAD/DEAH box helicase [Escherichia coli E1167]
 gi|330908082|gb|EGH36601.1| ATP-dependent RNA helicase RhlB [Escherichia coli AA86]
 gi|331036186|gb|EGI08421.1| ATP-dependent RNA helicase RhlB [Escherichia coli H736]
 gi|331041475|gb|EGI13623.1| ATP-dependent RNA helicase RhlB [Escherichia coli M605]
 gi|331052693|gb|EGI24728.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA206]
 gi|331057324|gb|EGI29313.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA143]
 gi|331062098|gb|EGI34020.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA271]
 gi|331072436|gb|EGI43768.1| ATP-dependent RNA helicase RhlB [Escherichia coli H591]
 gi|332105064|gb|EGJ08410.1| ATP-dependent RNA helicase rhlB [Shigella sp. D9]
 gi|332345760|gb|AEE59094.1| ATP-dependent RNA helicase RhlB [Escherichia coli UMNK88]
 gi|332751084|gb|EGJ81488.1| ATP-dependent RNA helicase rhlB [Shigella flexneri K-671]
 gi|332996857|gb|EGK16477.1| ATP-dependent RNA helicase rhlB [Shigella flexneri VA-6]
 gi|333013582|gb|EGK32949.1| ATP-dependent RNA helicase rhlB [Shigella flexneri K-304]
          Length = 421

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + IEV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|308177940|ref|YP_003917346.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
 gi|307745403|emb|CBT76375.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
           Re117]
          Length = 538

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 136/374 (36%), Positives = 214/374 (57%), Gaps = 16/374 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +   +V ++ +AG   P PIQ  T+P+ L  +D+ G A+TGTGKT  F +P L  
Sbjct: 28  FADLKVREDIVASLSEAGIEYPFPIQALTLPVALGGNDIIGQAKTGTGKTLGFGIPALQR 87

Query: 63  L----EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    +KG   +  P   + LI+ PTRELA QV  +  +  K+ N+++  + GG P+E Q
Sbjct: 88  VVREGDKGYEDLEFPGAPQALIVAPTRELAIQVGADLAQASKHSNISITTIYGGRPYEEQ 147

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
              L+ G DV++ TPGR++D  NR ++L +  ++ +V+DEAD MLD+GF+P ++ I + +
Sbjct: 148 INALKAGTDVIVGTPGRLID-LNRQRVLNLKQVKTVVLDEADEMLDLGFLPDVERILAAL 206

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP----SSTAETIEHCFVATYAQYSK 230
           P  RQ +LFSATM   +  ++  ++  P  I    P    S T   I        A    
Sbjct: 207 PPVRQAMLFSATMPGAVITMARRYMTRPTHIRAQDPGDDDSLTKRNIRQLIY--RAHNMD 264

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K  ++ +LLQ++   K  IIF   K++   L   L  +GF+  ++HG++ Q +R + L  
Sbjct: 265 KDEMVARLLQAEGRGKT-IIFTQTKRSAARLSDELIDRGFNAGSLHGDLGQGAREQALKA 323

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G ++++VA+D+AARG+D+ DV HV N   P+    Y+HR+GRTGRAG  G A T V 
Sbjct: 324 FRSGKVEILVATDVAARGIDVDDVTHVVNLQCPDDENTYLHRVGRTGRAGNTGTAVTFVD 383

Query: 351 KEDIKHIDAIEKLI 364
            + +     I K +
Sbjct: 384 WDSVPRWSLINKAL 397


>gi|302524385|ref|ZP_07276727.1| cold-shock DEAD-box protein [Streptomyces sp. AA4]
 gi|302433280|gb|EFL05096.1| cold-shock DEAD-box protein [Streptomyces sp. AA4]
          Length = 522

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 146/388 (37%), Positives = 217/388 (55%), Gaps = 23/388 (5%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           + P++V A+ +AG      IQ  T+PL +   D+ G A+TG GKT  F +P+L       
Sbjct: 1   MKPEIVKALAEAGIEHTFAIQALTLPLAMAGDDLIGQARTGMGKTLGFGVPLLH------ 54

Query: 68  ARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            RV++P     + L++ PTREL  QVA++ +  GK+  +    + GG P+E Q + L +G
Sbjct: 55  -RVQVPGDGTPQVLVVVPTRELCIQVANDLKGAGKHLGIRTLAIYGGRPYEPQIEALRKG 113

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV+I TPGR+LD   +  L++  I  LV+DEAD MLD+GF+P I+ I  +VP  RQT+L
Sbjct: 114 VDVVIGTPGRLLDLAEQQHLVLGKIRGLVLDEADEMLDLGFLPDIERILRMVPDERQTML 173

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +  ++  FL  P  I      + A           A    K  L+ + LQ++
Sbjct: 174 FSATMPGPIITLARTFLNQPTHIRAEENDAGAIHERTAQFVYRAHSMDKTELIARALQAE 233

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF   K+    +   L ++GF+  A+HG++ Q +R + L  F+ G + ++VA+
Sbjct: 234 GRGLT-MIFSRTKRTAQKIADDLVERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLVAT 292

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G A TLV  ++    +A  K
Sbjct: 293 DVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGVAITLVDWDE----EARWK 348

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           LI    D LN DL+    P+E    + H
Sbjct: 349 LIS---DTLNLDLAE---PVETYSSSPH 370


>gi|60115445|dbj|BAD90013.1| p68 RNA helicase [Tubifex tubifex]
          Length = 490

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 147/403 (36%), Positives = 227/403 (56%), Gaps = 22/403 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   V   +    + +PTPIQ +  P+ L   D+ GIAQTG+GKT S++LP +
Sbjct: 61  LTFQEACLPDYVQLILRQQNWTQPTPIQAQGWPIALSGLDIVGIAQTGSGKTLSYILPAI 120

Query: 61  TILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             +   + R++    P  L+L PTRELA QVA   + +G   ++    + GG P   Q +
Sbjct: 121 IHINH-QPRLQYGDGPVCLVLVPTRELAQQVAQVAQLFGNTSSVRNVCVYGGAPKGPQIR 179

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+RGA++ I TPGR++D  + GK  +     LV+DEADRMLDMGF P I+ I   V   
Sbjct: 180 DLQRGAEICIATPGRLIDLLDAGKTNLQRCTYLVLDEADRMLDMGFEPQIRKILEQVRPD 239

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKC 232
           RQTL++SAT   E+++++E FL +  +I + +   TA     + ++ C  +   + SK  
Sbjct: 240 RQTLMWSATWPKEVKQLAETFLTDYIQINIGSTQLTANHSILQIVDVC--SEEEKESKLN 297

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LLQ+++   ++    ++F   K+   +L + +++ G+    IHG+  Q  R  +L +F+
Sbjct: 298 RLLQEIM--GESNNKTMVFVETKRRANDLAYKMKRAGWMAACIHGDKSQEERDSVLRDFR 355

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-K 351
            G I ++VA+D+AARGLD+ DV  V NFD PN +E+Y+HRIGRTGRAG  G A+TL   K
Sbjct: 356 NGRIPILVATDVAARGLDVDDVKFVVNFDYPNCSEDYVHRIGRTGRAGHTGTAYTLFTPK 415

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
              K  D IE L E            +NP L ++     ++ R
Sbjct: 416 NAPKARDLIEVLTEAN--------QQINPKLSQLMSTARDYGR 450


>gi|253771020|gb|ACT35658.1| PL10-like protein [Haliotis asinina]
          Length = 775

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 147/377 (38%), Positives = 216/377 (57%), Gaps = 28/377 (7%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARV--------- 70
           Y KPTP+Q  +IP+VL R D+   AQTG+GKTA+F++P+L  I +KG  +V         
Sbjct: 319 YTKPTPVQKYSIPIVLGRRDLMACAQTGSGKTAAFLVPILNQIYDKGPGQVPQQQRQYGK 378

Query: 71  ---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
              + P  L+L PTRELA+Q+ D   K+     +   ++ GG    AQ + L+RG  +L+
Sbjct: 379 RTKQYPIALVLAPTRELASQIYDEARKFAYRSRVRPCVVYGGADIGAQMRDLDRGCHMLV 438

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL----VPFTRQTLLF 183
            TPGR++D   RGK+ +   + LV+DEADRMLDMGF P I+ I       V   RQTL+F
Sbjct: 439 ATPGRLVDMVERGKIGLEYCKFLVLDEADRMLDMGFEPQIRLIVEKNGMPVSGERQTLMF 498

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT   E+Q ++ +FL+N   + V    ST+E I    V  + + ++K + L  L+ +  
Sbjct: 499 SATFPKEIQILARDFLENYVFLAVGRVGSTSENITQKVV--WVEENEKRSFLLDLINASG 556

Query: 244 TMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +G     + F   KK    L   L+K+G+   +IHG+  QR R   L  F+ G   +
Sbjct: 557 MFSSGPESLTLTFLETKKGADALEEFLQKEGYPATSIHGDRSQREREDALKVFRSGDRPI 616

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI- 357
           +VA+ +AARGLDIP+V HV NFD+P+  E Y+HRIGRTGR G  G A +   +++   I 
Sbjct: 617 LVATAVAARGLDIPNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNKNIIR 676

Query: 358 DAIEKLIEKKVD---WL 371
           D ++ L+E   +   WL
Sbjct: 677 DLLDLLVEANQEVPTWL 693


>gi|157144413|ref|YP_001451732.1| ATP-dependent RNA helicase RhlB [Citrobacter koseri ATCC BAA-895]
 gi|189040026|sp|A8ACT3|RHLB_CITK8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|157081618|gb|ABV11296.1| hypothetical protein CKO_00122 [Citrobacter koseri ATCC BAA-895]
          Length = 421

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 213/373 (57%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKV+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVIEALENKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSSFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     I+F N K    ++   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIEAYIGHSI 379


>gi|309972421|gb|ADO95622.1| ATP-dependent RNA helicase [Haemophilus influenzae R2846]
          Length = 439

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 134/383 (34%), Positives = 212/383 (55%), Gaps = 6/383 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F    LSP+++ A+    Y +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP L  
Sbjct: 6   FEQFDLSPELLKALEKKSYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++        
Sbjct: 66  LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QTL
Sbjct: 126 NQDLVVATPGRLLQYIKAENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  EL    +   L +P +++        + I   +    +    K  LL + ++
Sbjct: 186 LFSATLEGELLVDFAARLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++  + GI+F  ++++   L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 245 TEEVTR-GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381
           ++  E+  K   L G      PP
Sbjct: 364 KRYTEEILKARILEGLEPRTKPP 386


>gi|330792086|ref|XP_003284121.1| hypothetical protein DICPUDRAFT_27074 [Dictyostelium purpureum]
 gi|325085935|gb|EGC39333.1| hypothetical protein DICPUDRAFT_27074 [Dictyostelium purpureum]
          Length = 593

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 137/359 (38%), Positives = 204/359 (56%), Gaps = 11/359 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRAR 69
           ++ AG+  PTPIQ +  P+ L+  D+ G+A+TG+GKT +F+LP +        L+ G   
Sbjct: 234 IMAAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPTLKPGDG- 292

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  L+L PTRELA Q+ +   K+G    ++   + GG    +Q   L++G +++I T
Sbjct: 293 ---PIVLVLAPTRELALQIQEQARKFGGTSQISNVCVYGGASKHSQVMMLKKGVEIVIAT 349

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGR++D    G   +  +  LV+DEADRMLDMGF P I+ I S +   RQTL+FSAT   
Sbjct: 350 PGRLIDILTSGDTNLRRVTYLVLDEADRMLDMGFEPQIRKILSQIRPDRQTLMFSATWPK 409

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
           E+Q ++ +FL +  ++ + +   TA    +  V   ++Y KK  L + L  +       I
Sbjct: 410 EVQSLANDFLSDHIQVHIGSSELTANHNVNQIVEVCSEYEKKERLFKFLEANVSKDDKVI 469

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           IF   +K V  L  SL+  GF    IHGN  Q  R  +LS FK G   +M+A+DLA+RGL
Sbjct: 470 IFAETRKGVDELHRSLQSAGFKSIGIHGNKSQPERDFVLSQFKNGIFPIMIATDLASRGL 529

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI-DAIEKLIEKK 367
           D+ D+  V N+D PN  E Y+HRIGRT RAG  G + + + +E+ +   D I+ L E K
Sbjct: 530 DVKDIKFVVNYDFPNTIETYVHRIGRTARAGATGTSISFLTRENARLANDLIKVLSEAK 588


>gi|33519584|ref|NP_878416.1| cold-shock DEAD-box protein A, inducible ATP-independent RNA
           helicase [Candidatus Blochmannia floridanus]
 gi|33517247|emb|CAD83630.1| Cold-shock DEAD-box protein A, inducible ATP-independent RNA
           helicase [Candidatus Blochmannia floridanus]
          Length = 487

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 142/381 (37%), Positives = 229/381 (60%), Gaps = 14/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL+  +V  + + GY  P PIQ + IPL+L+  D+ G+A TG+GKTA+F+LP+L  
Sbjct: 8   FVDLGLNTYIVDMLSNIGYQAPLPIQTQCIPLLLKGCDLLGMAHTGSGKTAAFLLPLLQN 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKLE 120
           ++    + R  + LI+ PTRELA Q+      + K+ +  + +A+L GG  +  Q   L+
Sbjct: 68  ID---IKQRFVQGLIIVPTRELAIQIGHVCMYFIKSLSHIINIAVLYGGQNYRIQFNDLK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++I TPGR+LDH +RG L ++ ++ L+IDEAD ML MGFI  I++I   VP  RQT
Sbjct: 125 KNPHIIIGTPGRLLDHLSRG-LDISKLKTLIIDEADEMLRMGFIEDIEHIIRYVPTHRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT+   ++K+S  F+ NPK I +N   S    I+  +   +   SK  AL++ L  
Sbjct: 184 ALFSATLPVSIRKLSYKFMCNPKEIYINPSISACADIKQSYWLVHG-ISKHEALMRFL-- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  IIF   K   + +   L++ G++  A++G+++Q  R K +S  + GT+ +++
Sbjct: 241 EVEKFEAVIIFVRTKSATLQISEILQRFGYNSAALNGDMNQSVRCKTISRLRCGTLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARGLDI  +  V N+D+P     Y+HRIGRTGRAGR GK+   V +++    + +
Sbjct: 301 TTDVAARGLDINRISFVINYDIPCNYNAYVHRIGRTGRAGRSGKSLLFVERQEYHLFNYV 360

Query: 361 EKLIEKKVDWLNGDLSSLNPP 381
              I+++V  LN ++  +  P
Sbjct: 361 ---IKRRV--LNSNIVKVKCP 376


>gi|308187815|ref|YP_003931946.1| ATP-dependent RNA helicase [Pantoea vagans C9-1]
 gi|308058325|gb|ADO10497.1| ATP-dependent RNA helicase [Pantoea vagans C9-1]
          Length = 442

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 208/368 (56%), Gaps = 4/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ A+ + G+ +PT IQ   IP  L+  DV G A TGTGKTA+++LP L  
Sbjct: 6   FSELELDESLLQALQEKGFTRPTVIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LI+ PTRELA QVAD+  +  K+ +L +A + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRILIVTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          +E LV+DEADRMLDMGF   I+ I +   + +QT+
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLVLDEADRMLDMGFAQDIETIAAETRWRKQTM 185

Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  D ++  +E  L  P  +E +      + I+  +         K  LL  LLQ
Sbjct: 186 LFSATLEGDNIRDFAERLLNEPVELEADPSRRERKKIQQWYYRA-DDLQHKTKLLIHLLQ 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  ++ I+F  +++ +  L   L + G     + G + Q  R + +    EG + ++V
Sbjct: 245 QPDVTRS-IVFVRKRERLHELVSWLHEAGIRSSYLEGEMVQAKRNEAIKRLSEGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV HVFN+D+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  I
Sbjct: 304 ATDIAARGIDVEDVSHVFNYDMPRTADTYLHRIGRTGRAGRKGIAISLVEAHDFVLLGKI 363

Query: 361 EKLIEKKV 368
            + + + +
Sbjct: 364 TRYVNEPI 371


>gi|110807530|ref|YP_691050.1| ATP-dependent RNA helicase RhlB [Shigella flexneri 5 str. 8401]
 gi|122957085|sp|Q0SYX0|RHLB_SHIF8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|110617078|gb|ABF05745.1| putative ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401]
          Length = 421

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + IEV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIENYIGHSI 379


>gi|332998278|gb|EGK17880.1| ATP-dependent RNA helicase rhlB [Shigella flexneri K-272]
          Length = 421

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + IEV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|218707416|ref|YP_002414935.1| ATP-dependent RNA helicase RhlB [Escherichia coli UMN026]
 gi|293407410|ref|ZP_06651330.1| ATP-dependent RNA helicase RhlB [Escherichia coli FVEC1412]
 gi|298383150|ref|ZP_06992744.1| ATP-dependent RNA helicase RhlB [Escherichia coli FVEC1302]
 gi|300900676|ref|ZP_07118829.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|226739535|sp|B7NF85|RHLB_ECOLU RecName: Full=ATP-dependent RNA helicase rhlB
 gi|218434513|emb|CAR15440.1| ATP-dependent RNA helicase [Escherichia coli UMN026]
 gi|291425521|gb|EFE98559.1| ATP-dependent RNA helicase RhlB [Escherichia coli FVEC1412]
 gi|298276386|gb|EFI17905.1| ATP-dependent RNA helicase RhlB [Escherichia coli FVEC1302]
 gi|300355825|gb|EFJ71695.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
          Length = 421

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + IEV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|28574962|ref|NP_648062.2| CG10077, isoform A [Drosophila melanogaster]
 gi|20976828|gb|AAM27489.1| GH10652p [Drosophila melanogaster]
 gi|28380590|gb|AAF50635.2| CG10077, isoform A [Drosophila melanogaster]
 gi|220947070|gb|ACL86078.1| CG10077-PA [synthetic construct]
 gi|220960420|gb|ACL92746.1| CG10077-PA [synthetic construct]
          Length = 818

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 140/373 (37%), Positives = 213/373 (57%), Gaps = 12/373 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F + G    V+  +   G+ KPT IQ +  P+ +   D+ G+AQTG+GKT ++VLP +
Sbjct: 157 IEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAV 216

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA Q+     ++G N ++    + GG P   
Sbjct: 217 VHINNQPRLERGDG----PIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQ 272

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 273 QARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 332

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQ L++SAT   E+++++E FL N  ++ + + S +A       V    +  K   L
Sbjct: 333 RPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKL 392

Query: 235 LQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           ++ L   S +     IIF   KK V  +  ++ +QG+  CAIHG+  Q+ R  +LS+F+ 
Sbjct: 393 IKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRN 452

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    +
Sbjct: 453 GRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSN 512

Query: 354 I-KHIDAIEKLIE 365
             K  D I+ L E
Sbjct: 513 ANKANDLIQVLRE 525


>gi|148263462|ref|YP_001230168.1| ATP-dependent RNA helicase DbpA [Geobacter uraniireducens Rf4]
 gi|146396962|gb|ABQ25595.1| ATP-dependent RNA helicase DbpA [Geobacter uraniireducens Rf4]
          Length = 474

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 146/407 (35%), Positives = 225/407 (55%), Gaps = 21/407 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L   ++  +   GY + TPIQ  ++PL+L   DV   A+TG+GKTA+F + +L+ 
Sbjct: 17  FSSLHLKIHMLKNLASLGYAEMTPIQAHSLPLILAGKDVIAKAKTGSGKTAAFGIGLLSH 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+   +RV+    L+L PTRELA QV     +  +   N+ V  L GG+PF  Q   LE 
Sbjct: 77  LDATSSRVQ---ALVLCPTRELADQVGKELRRLARFTDNIKVLTLCGGVPFGPQLGSLEH 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRILDH  RG L +  ++ LV+DEADRMLDMGF   I  +    P  +QTL
Sbjct: 134 GAHIVVGTPGRILDHLRRGSLDLTCLQTLVLDEADRMLDMGFQDEISALIDATPKKKQTL 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + +  +S      P  + V+     +   +  +     + ++  A +    + 
Sbjct: 194 LFSATYPEAIAAMSATIQHEPVAVSVDEVHDESAIEQVLYEVDKEERTEAVARILGHYRP 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T+    +FCN K     +  +L K+GFS  AIHG+++QR R ++L  F   ++ ++VA
Sbjct: 254 ESTL----VFCNTKIECQEVADALVKRGFSALAIHGDLEQRERDQVLVRFANKSVSVLVA 309

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++  V N+++    E +IHRIGRTGRAG  G   +LV  ++ + + AIE
Sbjct: 310 TDVAARGLDIKELAAVINYELSRDPEIHIHRIGRTGRAGETGLGLSLVTAQESRRVQAIE 369

Query: 362 KLIEKKVDWLNGDLSSLN--------PPLEKIDIAQHNHARKNNPIP 400
             +   +    G+L+SL         PP+  + I   +  RKN   P
Sbjct: 370 TALGTPIP--RGELASLTIAAGGPLAPPMVTLCI---DGGRKNKMRP 411


>gi|193071050|ref|ZP_03051977.1| ATP-dependent RNA helicase RhlB [Escherichia coli E110019]
 gi|192955637|gb|EDV86113.1| ATP-dependent RNA helicase RhlB [Escherichia coli E110019]
          Length = 421

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + IEV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|254525036|ref|ZP_05137091.1| putative ATP-dependent RNA helicase [Stenotrophomonas sp. SKA14]
 gi|219722627|gb|EED41152.1| putative ATP-dependent RNA helicase [Stenotrophomonas sp. SKA14]
          Length = 565

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 138/375 (36%), Positives = 221/375 (58%), Gaps = 10/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           M F+   L P +   +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++   
Sbjct: 1   MTFSSFELHPALQAGLEGAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVV 60

Query: 59  --MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             +LT       +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q 
Sbjct: 61  NRLLTRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGSDLGLRFALVYGGVDYDKQR 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L++G DV+I TPGR++D+  + K++ ++  EI V+DEADRM D+GFI  I+ +   +P
Sbjct: 121 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 180

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
               RQTLLFSAT++  + +++   +  P+++ V   + TA  +       +    +K  
Sbjct: 181 ERTIRQTLLFSATLSHRVLELAYEHMNEPQKLVVEAETITAARVRQRIY--FPADDEKIP 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  LL   +  +  ++F N K  V  +  SLEK G+ V  + G++ Q+ R  +L+ F++
Sbjct: 239 LLLGLLSRSEGART-MVFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLLNRFQK 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++++VA+D+AARGL I  + +V+N+D+P  AE+Y+HRIGRT R G  G A +   +  
Sbjct: 298 GQLEILVATDVAARGLHIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERY 357

Query: 354 IKHIDAIEKLIEKKV 368
              +  IE  IE+K+
Sbjct: 358 AMGLPDIEAYIEQKI 372


>gi|16762215|ref|NP_457832.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16767190|ref|NP_462805.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29143704|ref|NP_807046.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62182390|ref|YP_218807.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161617032|ref|YP_001590997.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167553316|ref|ZP_02347066.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167994610|ref|ZP_02575701.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234235|ref|ZP_02659293.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168238371|ref|ZP_02663429.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168244966|ref|ZP_02669898.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168263194|ref|ZP_02685167.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194445390|ref|YP_002043152.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449027|ref|YP_002047935.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194737374|ref|YP_002116850.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197251034|ref|YP_002148844.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|204930263|ref|ZP_03221240.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205354515|ref|YP_002228316.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207859126|ref|YP_002245777.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224585737|ref|YP_002639536.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|61230470|sp|P0A2P0|RHLB_SALTY RecName: Full=ATP-dependent RNA helicase rhlB
 gi|61230478|sp|P0A2P1|RHLB_SALTI RecName: Full=ATP-dependent RNA helicase rhlB
 gi|81309537|sp|Q57HT6|RHLB_SALCH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040036|sp|A9MXF3|RHLB_SALPB RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739543|sp|B5EZ40|RHLB_SALA4 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739545|sp|B5QVH2|RHLB_SALEP RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739546|sp|B5RFS3|RHLB_SALG2 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739547|sp|B4TB13|RHLB_SALHS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739548|sp|B4SZ26|RHLB_SALNS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739550|sp|B4TNT3|RHLB_SALSV RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797690|sp|C0Q2V9|RHLB_SALPC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|25513028|pir||AG0922 probable ATP-dependent RNA helicase rhlB [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16422482|gb|AAL22764.1| putative helicase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16504519|emb|CAD09401.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139339|gb|AAO70906.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62130023|gb|AAX67726.1| putative helicase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161366396|gb|ABX70164.1| hypothetical protein SPAB_04860 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404053|gb|ACF64275.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407331|gb|ACF67550.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194712876|gb|ACF92097.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197214737|gb|ACH52134.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197288752|gb|EDY28127.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|204320667|gb|EDZ05869.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205274296|emb|CAR39317.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205322216|gb|EDZ10055.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327555|gb|EDZ14319.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331809|gb|EDZ18573.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336231|gb|EDZ22995.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205348300|gb|EDZ34931.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710929|emb|CAR35295.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224470265|gb|ACN48095.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261249043|emb|CBG26903.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996196|gb|ACY91081.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160435|emb|CBW19964.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915038|dbj|BAJ39012.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225440|gb|EFX50497.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322716883|gb|EFZ08454.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323132267|gb|ADX19697.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326629650|gb|EGE35993.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332990755|gb|AEF09738.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 421

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 143/373 (38%), Positives = 212/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P+VV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAA 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIESYIGHSI 379


>gi|313205812|ref|YP_004044989.1| dead/deah box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|312445128|gb|ADQ81483.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|315022792|gb|EFT35816.1| Cold-shock DEAD-box protein A [Riemerella anatipestifer RA-YM]
          Length = 554

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 132/360 (36%), Positives = 217/360 (60%), Gaps = 11/360 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61
           F++  LSP+++ AV + G+  PT IQ ++IP +L    D+  +AQTGTGKTA+F LP+L 
Sbjct: 4   FSESNLSPEILKAVGEMGFETPTEIQKQSIPFILSDVRDLIALAQTGTGKTAAFSLPILD 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           +++    ++++   L+L PTREL  Q+A + + Y K   N+    + GG     Q + L 
Sbjct: 64  MIDDTSRKIQL---LVLCPTRELCLQIAKDIKNYSKYQPNIKSVAVYGGSSITDQIRSLR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR++D  NR  L  ++I  LV+DEAD ML MGF   ++ I S  P T+QT
Sbjct: 121 DKPQIIVGTPGRVIDLINRKALDFSSIHWLVLDEADEMLSMGFKDDLETILSETPETKQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++++S+++L NP RI V + ++  + I H +      Y +K   L++L+ 
Sbjct: 181 LLFSATMNKEVERISKSYLTNPHRISVGSINAVKKNISHEYYV--VNYRQKKEALKRLID 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +    +  IIFC  +     +   L + G++  A+HG++ Q  R  ++  F+   I ++V
Sbjct: 239 ANPN-QYSIIFCRTRMEAKEVADYLMQNGYAADALHGDLSQAQRDTVMLKFRLKNIDILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHI 357
           A+D+AARGLD+  + HV ++ +P+  E ++HR GRTGRAG+ G +  L+  E+   +KHI
Sbjct: 298 ATDVAARGLDVDSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEETRKLKHI 357


>gi|288928387|ref|ZP_06422234.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288331221|gb|EFC69805.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 447

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 221/378 (58%), Gaps = 18/378 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  +   TPIQ   IP +L+  D+ G+AQTGTGKTA+++LP++
Sbjct: 1   MTFEELDLNDNVLDALYDMRFETCTPIQEHCIPQILEGKDILGVAQTGTGKTAAYLLPIM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI----GGIPFEAQN 116
           ++L+ G         +I+ PTRELA Q+    + +G   +   +L I     G  ++ + 
Sbjct: 61  SMLDDGGFPHDAINCIIMSPTRELAQQIDQAMQGFGYYLDSVSSLPIYGGNDGNRYDQEI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  GAD++I TPGR + H   G + ++ +   V+DEADRMLDMGF   I  I   +P 
Sbjct: 121 KSLRLGADIIIATPGRFISHIQLGNVDLSKVSFFVLDEADRMLDMGFSEDIMTIAKQLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T QT++FSATM  +++++++  L+NP  I++   S  AE I        AQ +  C   Q
Sbjct: 181 TCQTIMFSATMPPKIEQLAKTLLKNPVEIKLAV-SKPAEKI--------AQKAYLCYEPQ 231

Query: 237 QLLQSQDTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
           +L   +D  K G     IIF  +K+ V  +  +L +   +   +H ++ Q  R +++  F
Sbjct: 232 KLKVLEDIFKAGHLNRVIIFSGKKQKVKEINRALVRMKINSDEMHSDLSQEERDQVMFKF 291

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   ++VA+D+ +RG+DI D+  V N+DVP+  E+Y+HRIGRT RA R G A TL++ 
Sbjct: 292 KSGATDVLVATDILSRGIDIDDITMVINYDVPHDVEDYVHRIGRTARAERDGVAITLISD 351

Query: 352 EDIKHIDAIEKLIEKKVD 369
           +D+ +   IE+ +EK+++
Sbjct: 352 QDVYYFQQIERFLEKEIE 369


>gi|8489871|gb|AAF75791.1|AF271892_1 DEAD box protein P68 [Pisum sativum]
          Length = 622

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 207/373 (55%), Gaps = 13/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D+ L P ++  +    Y +P+ IQ + +P+ L   D+ G A+TG+GKTA+F +PML  
Sbjct: 120 FNDMCLHPSIMKDIAYHEYTRPSSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMLQH 179

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
            +++    R   P  L+L PTRELA Q+    + + ++  +L   +++GG   E Q  +L
Sbjct: 180 CLVQPPIRRGDGPLALVLAPTRELAQQIEKEVQAFSRSLESLKNCIVVGGTNIEKQRSEL 239

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G ++ + TPGR +DH  +G   ++ I  +V+DEADRMLDMGF P I+ I   +P   Q
Sbjct: 240 RAGVEIAVATPGRFIDHLQQGNTSLSRISYVVLDEADRMLDMGFEPQIREIMRSLPEKHQ 299

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E++ +++ +L NP +++V   SS    +    V      S+K   L  LL
Sbjct: 300 TLLFSATMPVEIEALAKEYLANPVQVKVGKVSSPTTNVSQTLVKVSG--SEKIDRLLDLL 357

Query: 240 --QSQDTMKNG------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             ++    K G      I+F  +K     +  +L  QG S  ++HG   Q  R   L NF
Sbjct: 358 VEEASQAEKCGHRFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGHSQNEREAALQNF 417

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +  +  ++VA+D+A+RGLD+  V HV N D+P   E+YIHRIGRTGRAG  G A +    
Sbjct: 418 RSSSTSILVATDVASRGLDVTGVSHVINLDLPKTTEDYIHRIGRTGRAGSTGIATSFYTD 477

Query: 352 EDIKHIDAIEKLI 364
            D+  +  I K I
Sbjct: 478 RDMFLVTNIRKAI 490


>gi|119582642|gb|EAW62238.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_a [Homo
           sapiens]
 gi|119582646|gb|EAW62242.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_a [Homo
           sapiens]
          Length = 883

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232
           V   RQT++FSAT    ++ ++   L  P  ++V   S     +E    V    +   K 
Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L    Q   ++   IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK
Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++
Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             ++   I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   
Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779

Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439
           +   +  +   E +K+ K    +Q++D
Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805


>gi|312969491|ref|ZP_07783693.1| ATP-dependent RNA helicase rhlB [Escherichia coli 2362-75]
 gi|312286038|gb|EFR13956.1| ATP-dependent RNA helicase rhlB [Escherichia coli 2362-75]
          Length = 421

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + IEV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPGRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|164428960|ref|XP_001728501.1| hypothetical protein NCU11175 [Neurospora crassa OR74A]
 gi|157072353|gb|EDO65410.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 857

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 142/359 (39%), Positives = 207/359 (57%), Gaps = 3/359 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ LS  ++  +   G+ KPTPIQ KTIP+ L   DV G A TG+GKTA+FV+P+L  
Sbjct: 295 FQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVPILER 354

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R +IL PTRELA Q      K   + ++   L +GG+  + Q  +L   
Sbjct: 355 LLYRPKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSLKVQEAELRLR 414

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ IEILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 415 PDVVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLEDGFADELNEILTTLPKSRQTM 474

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMT  + ++    L  P RI  ++   TA T+   FV     + SK+   L  + +
Sbjct: 475 LFSATMTSSVDRLIRAGLNKPVRIMADSQKKTAGTLVQEFVRLRPGRESKREGYLLHICK 534

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  T +  IIF  QKK    +       G S   +HG+++Q  R++ + +F++G +  ++
Sbjct: 535 TIYTERV-IIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQAQRIQSVEDFRDGKVNFLL 593

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G A TL A+ D K + A
Sbjct: 594 ATDLASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKA 652


>gi|302783318|ref|XP_002973432.1| hypothetical protein SELMODRAFT_52088 [Selaginella moellendorffii]
 gi|300159185|gb|EFJ25806.1| hypothetical protein SELMODRAFT_52088 [Selaginella moellendorffii]
          Length = 506

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 144/393 (36%), Positives = 221/393 (56%), Gaps = 27/393 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD+ L P +   +    +VKPTP+Q   IP+ L   D+   AQTG+GKTA+F  P++  
Sbjct: 54  FADVDLGPVLNENIRRCKFVKPTPVQKHAIPISLHGRDLMACAQTGSGKTAAFCFPIIAG 113

Query: 63  L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
           +           +G +R   P  LIL PTREL++Q+ D  +K+     + V ++ GG   
Sbjct: 114 ILWNFPPGSRHARG-SRKAFPLALILSPTRELSSQIHDEAKKFAYQTGVKVVVIYGGTSV 172

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-- 170
           ++Q K+LERG D+L+ TPGR+ D   RG++ ++ +  L +DEADRMLDMGF P I+ I  
Sbjct: 173 QSQLKELERGVDILVATPGRLDDLMQRGRISLSLVRYLALDEADRMLDMGFEPQIRKIVE 232

Query: 171 -TSLVPF-TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
            T + P   RQT+LFSAT   E+Q+++ +FL N   + V    S+ + I       Y   
Sbjct: 233 NTDMPPAGQRQTMLFSATFPREIQRLAADFLYNYIFLAVGRVGSSTDLIVQR--VEYVHD 290

Query: 229 SKKCALLQQLLQSQDTMK-NG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             K ++L  ++ +Q     NG     ++F   K+   +L   L + G S   IHG+  Q 
Sbjct: 291 VDKRSMLMDMIHAQKPNGLNGQLPLILVFVETKRGADSLEDWLIQMGISATTIHGDRTQV 350

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R   L +F+ G   ++VA+D+AARGLDIP V HV N+D+P+  ++Y+HRIGRTGRAG+ 
Sbjct: 351 EREHALRSFRTGVTPILVATDVAARGLDIPHVAHVINYDLPSDIDDYVHRIGRTGRAGKS 410

Query: 343 GKAFTLVAKEDIK----HIDAIEKLIEKKVDWL 371
           G A      +D       +D +++  ++  +WL
Sbjct: 411 GFATAFFTDKDTSLARPLVDLMQEANQQVPEWL 443


>gi|293413224|ref|ZP_06655886.1| ATP-dependent RNA helicase RhlB [Escherichia coli B354]
 gi|291468172|gb|EFF10669.1| ATP-dependent RNA helicase RhlB [Escherichia coli B354]
          Length = 427

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 17  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 76

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 77  LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 136

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 137 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 196

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + IEV     T   I E  F   Y    +K  LL
Sbjct: 197 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 253

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 254 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 312

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 313 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 372

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 373 NLPAIETYIGHSI 385


>gi|169234830|ref|NP_001108495.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Rattus norvegicus]
 gi|165971701|gb|AAI58856.1| Ddx49 protein [Rattus norvegicus]
          Length = 480

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 154/416 (37%), Positives = 231/416 (55%), Gaps = 17/416 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L LS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAELRLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     L+L PTRELA Q+A+ F   GK   L   +++GG+    Q  +L R 
Sbjct: 64  LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSRK 120

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178
             V+I TPGR+ DH        M  I  LV+DEADR+L+ G   F   ++ I S VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+TD L+++       P   E        E ++  ++    +   K A L  L
Sbjct: 181 QTLLFSATLTDTLKELQGLATNQPFFWEAQATVRMVEQLDQRYLLVPEKV--KDAYLVHL 238

Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q+ QD +++   IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK  T
Sbjct: 239 VQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALARFKSST 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI 
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            + AIE+ I++++  L  + + +   L ++++      R+   I  +++ FD +K+
Sbjct: 359 LLHAIEEEIKQQLAELAVEEAQVLQILTQVNV-----VRRECEIKLEASHFDEKKE 409


>gi|145255454|ref|XP_001398969.1| ATP-dependent rRNA helicase RRP3 [Aspergillus niger CBS 513.88]
 gi|143462251|sp|A2RB17|RRP3_ASPNC RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|134084560|emb|CAK43313.1| unnamed protein product [Aspergillus niger]
          Length = 467

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 214/368 (58%), Gaps = 8/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F +LG+  ++  A    GY  PTPIQ ++IPL L+  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 50  FKELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQA 109

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++EK +        L+L PTRELA Q++ +FE  G +  +   +++GG+   +Q+  L +
Sbjct: 110 LMEKPQPFF----GLVLAPTRELAYQISKSFESLGASMGVRSCVIVGGMDMVSQSISLGK 165

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+LDH    K   + N++ LV+DEADR+LDM F P +  I  ++P  R+T
Sbjct: 166 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRT 225

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L NP R+ V+T  S  +T+     +      K   L    L 
Sbjct: 226 FLFSATMSSKVESLQRASLSNPLRVSVST--SKYQTVSTLLQSYLFIPQKHKDLYLVYLL 283

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ IIF         L   L   GF    +HG + Q +R+  L  F+  +  ++V
Sbjct: 284 NEFAGQSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALGKFRARSRNILV 343

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V NFD+P  + +Y+HR+GRT RAG+ G A + VA+ D++    I
Sbjct: 344 ATDVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQYDVEVWLRI 403

Query: 361 EKLIEKKV 368
           E  + KK+
Sbjct: 404 EGALGKKL 411


>gi|18309844|ref|NP_561778.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens str. 13]
 gi|18144522|dbj|BAB80568.1| probable ATP-dependent RNA helicase [Clostridium perfringens str.
           13]
          Length = 478

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 129/364 (35%), Positives = 221/364 (60%), Gaps = 6/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ A+ + GY  P+ +Q  +IP +L+  D+   +QTG+GKTASF +P  
Sbjct: 1   MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + EK     +  + L+L PTRELA QV D     G+   +  A + G  PF  Q ++L+
Sbjct: 59  -VCEKINIEEKKVQCLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIRELK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+ DH  RG L ++ +  +VIDEAD+ML MGFI  I++I   +   + T
Sbjct: 118 QRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT + E++++ E +++NP  +EV +     + IE   +    + +K+ AL + L  
Sbjct: 178 ALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEK-NKEKALWKCLYA 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ I+FCN +  V ++   L+ +G +   +HG+++Q+ R++++ NF++   +++V
Sbjct: 237 YHP--ESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ +  +  V N++VP   E+Y+HRIGRTGRAGR GKA T V   + K+++ +
Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 354

Query: 361 EKLI 364
           E+ I
Sbjct: 355 EEYI 358


>gi|170769827|ref|ZP_02904280.1| ATP-dependent RNA helicase RhlB [Escherichia albertii TW07627]
 gi|170121265|gb|EDS90196.1| ATP-dependent RNA helicase RhlB [Escherichia albertii TW07627]
          Length = 421

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSSFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + IEV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|168467669|ref|ZP_02701506.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168822969|ref|ZP_02834969.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|197265404|ref|ZP_03165478.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|200386552|ref|ZP_03213164.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|238912924|ref|ZP_04656761.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|195630001|gb|EDX48661.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197243659|gb|EDY26279.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|199603650|gb|EDZ02195.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205340707|gb|EDZ27471.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320088331|emb|CBY98091.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322612998|gb|EFY09949.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617414|gb|EFY14314.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625594|gb|EFY22416.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627017|gb|EFY23810.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631267|gb|EFY28030.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638300|gb|EFY34999.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642850|gb|EFY39436.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646994|gb|EFY43496.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650382|gb|EFY46795.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656328|gb|EFY52622.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657553|gb|EFY53823.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665964|gb|EFY62145.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666703|gb|EFY62880.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671054|gb|EFY67184.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322679239|gb|EFY75291.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681643|gb|EFY77670.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686030|gb|EFY82018.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192656|gb|EFZ77884.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197837|gb|EFZ82968.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203726|gb|EFZ88747.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205399|gb|EFZ90373.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210770|gb|EFZ95646.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215936|gb|EGA00669.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221429|gb|EGA05847.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227329|gb|EGA11496.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231738|gb|EGA15849.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236153|gb|EGA20230.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239610|gb|EGA23658.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244294|gb|EGA28302.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249609|gb|EGA33521.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250299|gb|EGA34185.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256506|gb|EGA40237.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259796|gb|EGA43429.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265204|gb|EGA48702.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268367|gb|EGA51839.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 421

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 143/373 (38%), Positives = 212/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P+VV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAA 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIESYIGHSI 379


>gi|293468098|ref|ZP_06664510.1| ATP-dependent RNA helicase rhlB [Escherichia coli B088]
 gi|291321476|gb|EFE60914.1| ATP-dependent RNA helicase rhlB [Escherichia coli B088]
          Length = 427

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 17  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 76

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 77  LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 136

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 137 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 196

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + IEV     T   I E  F   Y    +K  LL
Sbjct: 197 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 253

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 254 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 312

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 313 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 372

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 373 NLPAIETYIGHSI 385


>gi|254578784|ref|XP_002495378.1| ZYRO0B09856p [Zygosaccharomyces rouxii]
 gi|238938268|emb|CAR26445.1| ZYRO0B09856p [Zygosaccharomyces rouxii]
          Length = 540

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 128/356 (35%), Positives = 204/356 (57%), Gaps = 11/356 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+  PT IQ +  P+ L   D+ G+A TG+GKT S+ LP +  
Sbjct: 112 FDEAGFPDYVLKEVKAEGFAAPTGIQCQGWPMALSGRDMVGVAATGSGKTLSYCLPAIVH 171

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+G++  +    + GG+P   Q 
Sbjct: 172 INAQPLLAPGDG----PVVLVLAPTRELAVQIQKECSKFGRSSRIRNTCVYGGVPRGQQI 227

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RGA+++I TPGR++D     K  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 228 RDLARGAEIVIATPGRLIDMLEINKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 287

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E+++++ ++L +P ++++ +   +A       V   +++ K+  L +
Sbjct: 288 DRQTLMWSATWPKEVKQLARDYLTDPIQVQIGSLELSASHTIKQVVEVISEFEKRDRLSK 347

Query: 237 QL-LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L + S+D     ++F + K+   ++   L + G+S  AIHG+ DQR R  +L  FK G 
Sbjct: 348 HLEIASEDQDSKVLVFASTKRTCDDITQYLRQDGWSALAIHGDKDQRERDWVLEEFKNGR 407

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
             +MVA+D+AARG+D+  + +V N+D+P   E+Y+HRIGRTGRAG  G A +   +
Sbjct: 408 SPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGAKGTAISFFTE 463


>gi|310801624|gb|EFQ36517.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 480

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 141/377 (37%), Positives = 214/377 (56%), Gaps = 24/377 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DLG++  +  A  + GY KPTPIQ ++IP  L   D+ G+A+TG+GKTA+F LP++  
Sbjct: 54  FKDLGVADSLCDACANLGYTKPTPIQAQSIPHALANRDIIGLAETGSGKTAAFALPVIQA 113

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEK +A       L+L PTRELAAQ+   FE  G   +L  A+++GG+   AQ   L +
Sbjct: 114 LLEKPQAFF----GLVLAPTRELAAQIGQQFEALGSLISLRTAVIVGGLDMVAQAIALGK 169

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR++DH  + K   + +++ LV+DEADR+LDM F P I  I   +P  R+T
Sbjct: 170 KPHVIVATPGRLVDHLEKTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKILKFIPRERRT 229

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAET-------IEHCFVATYAQYSKKC 232
            LFSATM+ +++ +    L++P R+ +++    T  T       I H    TY  Y    
Sbjct: 230 FLFSATMSSKIESLQRASLRDPVRVSISSNKYQTVSTLLQYYLFIPHQLKDTYLVY---- 285

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                 L ++   K  ++F         L   L   GF    +HG ++Q +R+  L+ F+
Sbjct: 286 ------LANEFAGKKLVVFTRTVSETQRLAILLRTLGFGAIPLHGQLNQTARLGALNKFR 339

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+D+AARGLDIP V  V N D+   ++ ++HRIGRT RAG+ G A +LV + 
Sbjct: 340 AGERSILVATDVAARGLDIPLVDVVINHDLAQDSKTHVHRIGRTARAGKSGIALSLVTQY 399

Query: 353 DIKHIDAIEKLIEKKVD 369
           D++    IE  + KK D
Sbjct: 400 DLEIWLRIEAALGKKQD 416


>gi|15604513|ref|NP_221031.1| putative ATP-dependent RNA helicase RHLE (rhlE) [Rickettsia
           prowazekii str. Madrid E]
 gi|3861207|emb|CAA15107.1| PUTATIVE ATP-DEPENDENT RNA HELICASE RHLE (rhlE) [Rickettsia
           prowazekii]
 gi|292572297|gb|ADE30212.1| ATP-dependent RNA helicase RhlE [Rickettsia prowazekii Rp22]
          Length = 407

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 213/364 (58%), Gaps = 13/364 (3%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +  LS +++ A+      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP++    
Sbjct: 3   NFNLSKELIIALETMNITEPTEIQKQSIPVAMSGADILASSQTGSGKTLAYLLPLIDAFI 62

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           K +        LIL PTRELA Q+     K    Y +  A+LIGG P   Q  +L++   
Sbjct: 63  KNKTTA-----LILVPTRELATQIHSTLNKVTTAYKMNSAVLIGGEPMFKQFMQLKKNPK 117

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           V+I TPGRI++H NR  L + +I I+V+DE DRMLDMG    ++ I   +P  RQ L+FS
Sbjct: 118 VIIGTPGRIIEHLNRRSLKIEHIGIIVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFS 177

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQSQ 242
           ATM   +  VS+ +L NP RI V   +  A  I  E   V+   ++S+   L +QL    
Sbjct: 178 ATMPKHIIAVSQKYLNNPVRIMVGATNKAAAEIKQELMHVSNKEKFSE---LTKQL---G 231

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           + + + IIF   K++   L   L+ +     AIHG++ Q  R +++ +F++   ++MVA+
Sbjct: 232 NRVGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQSQRERVILSFRKLNHRIMVAT 291

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +D+    AI++
Sbjct: 292 DVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGAIGHALSFISPDDVVRWRAIDR 351

Query: 363 LIEK 366
           L+ K
Sbjct: 352 LVNK 355


>gi|307204462|gb|EFN83169.1| ATP-dependent RNA helicase DDX42 [Harpegnathos saltator]
          Length = 770

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 136/355 (38%), Positives = 208/355 (58%), Gaps = 7/355 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F   G    ++ A+    + +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 256 FGHFGFDDALMKAIRKNEFTQPTPIQAQAVPAALNGRDIIGIAKTGSGKTAAFIWPMLVH 315

Query: 62  ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++   +    P  LIL PTREL+ Q+    +K+GK YN+ V    GG     Q+K LE
Sbjct: 316 IMDQRELKAGDGPIGLILAPTRELSQQIYQEAKKFGKVYNIQVCCCYGGGSKWEQSKALE 375

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA++++ TPGR++D        +  +  LV+DEADRM DMGF P +++I + V   RQT
Sbjct: 376 SGAEIVVATPGRMIDLVKMKATNLIRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQT 435

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    ++K++ + L +P RI           +    +  +    K   LLQ L++
Sbjct: 436 LLFSATFKKRVEKLARDVLMDPVRIVQGDVGEANTDVTQHVIMFHNPGGKWNWLLQNLVE 495

Query: 241 --SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S  ++   +IF  +K N   L ++L+ + F V  +HG++DQ  R K+++ FK+  +  
Sbjct: 496 FLSAGSL---LIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQIERNKVITAFKKKDVST 552

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TLV ++D
Sbjct: 553 LVATDVAARGLDIPHIKTVINYDVARDIDTHTHRIGRTGRAGEKGTAYTLVTEKD 607


>gi|254229671|ref|ZP_04923081.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262395214|ref|YP_003287068.1| ATP-dependent RNA helicase SrmB [Vibrio sp. Ex25]
 gi|151937792|gb|EDN56640.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262338808|gb|ACY52603.1| ATP-dependent RNA helicase SrmB [Vibrio sp. Ex25]
          Length = 407

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 212/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L L   ++ A+ + GY +PT IQ + IP  L   D+   A TGTGKTA+FVLP L  
Sbjct: 5   FAELDLDQNLLEAIEEMGYKRPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQY 64

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+    R   P R LIL PTRELA Q+AD      KN  L +  + GG+ ++     L  
Sbjct: 65  LQDFPRRKPGPARILILTPTRELAMQIADQARALAKNTKLNIFTITGGVQYQEHADILAT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+ ++ +  +     IE L++DEADRMLDMGF P +  +++   + +QTL
Sbjct: 125 TQDIVVATPGRLKEYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTL 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLL 239
           LFSAT+  + ++  + + L +P  I+  +P    + I   +  A  A++  K  LL+ ++
Sbjct: 185 LFSATLEGKGVEGFTADLLNDPAEIDAKSPLRERKKIAQWYHRADDAEH--KLELLKHII 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  I+F   ++ +  L   LE        I G + Q  R   +S F++GT+ ++
Sbjct: 243 TQQ--AERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFRDGTVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A ++V   D   +D 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR 360

Query: 360 IEKLIEKKV 368
           + + +++ +
Sbjct: 361 VARYVKEDI 369


>gi|317404068|gb|EFV84523.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
          Length = 462

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 144/367 (39%), Positives = 211/367 (57%), Gaps = 12/367 (3%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ + TPIQ +++PL+L+  D+   A+TG+GKTA+F L +L  L+  R     P+ L+L 
Sbjct: 23  GFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQKLDPARL---APQALLLC 79

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N+ +  L GG     Q + L RGA +++ TPGRI DH  
Sbjct: 80  PTRELADQVAQELRRLARQIANVKILTLCGGAAARPQAESLARGAHIVVGTPGRIQDHLE 139

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           RG L ++ +  LV+DEADRM+DMGF   I  I S  P  RQTLLFSAT  D ++K+S  F
Sbjct: 140 RGSLDLSGLTTLVLDEADRMVDMGFYDDIVAIASHCPAKRQTLLFSATYPDNIRKLSARF 199

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVAT-YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
           L+NP  ++V      A  IE  F     A+     A L    +   T+     FCN K  
Sbjct: 200 LRNPAEVKVEA-QHDASRIEQIFYEIDPAERLDAVATLLAHFRPVSTLA----FCNTKIR 254

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
             +L   L+  G S  A++G+++QR R +IL  F   +  ++VA+D+AARGLDI ++G V
Sbjct: 255 SHDLVERLQAAGISALALNGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLGAV 314

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
            N DV    E ++HRIGR+GR  + G A +L + ++++  + IE+     + W  GDL S
Sbjct: 315 INVDVTKDTEVHVHRIGRSGRGDQKGLALSLCSPDEMRWANLIEQYQGAPLTW--GDLKS 372

Query: 378 LNPPLEK 384
           L P  ++
Sbjct: 373 LRPKADR 379


>gi|297521198|ref|ZP_06939584.1| ATP-dependent RNA helicase RhlB [Escherichia coli OP50]
          Length = 425

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 15  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 74

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 75  LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 134

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 135 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 194

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + IEV     T   I E  F   Y    +K  LL
Sbjct: 195 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 251

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 252 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 310

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 311 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 370

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 371 NLPAIETYIGHSI 383


>gi|237732562|ref|ZP_04563043.1| ATP-dependent RNA helicase SrmB [Citrobacter sp. 30_2]
 gi|226908101|gb|EEH94019.1| ATP-dependent RNA helicase SrmB [Citrobacter sp. 30_2]
          Length = 442

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 139/354 (39%), Positives = 210/354 (59%), Gaps = 6/354 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ A+ + G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  
Sbjct: 6   FSELELDESLLDALQEKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVA++  +  KN +L VA + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAMQVAEHARELAKNTHLDVATITGGVAYMNHMEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +        + +E L++DEADRMLDMGF   I++I     + +QT+
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCHAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTM 185

Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALLQQLL 239
           LFSAT+  D ++  +E  L++P  +EV+   ST E  + H F         K A+L  LL
Sbjct: 186 LFSATLEGDAIKDFAERLLEDP--VEVSADPSTRERKKIHQFYYRADDIEHKTAMLIHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +  ++ I+F  +++ V  L   L + G + C + G + Q  R + +    +G + ++
Sbjct: 244 KQPEATRS-IVFVRKRERVHELAGWLRQAGINNCYLEGEMVQNKRNEAIKRLTDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+AARG+DIPDV HVFNFD+P   + Y+HRIGRTGRAGR G A +LV   D
Sbjct: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDAYLHRIGRTGRAGRKGTAISLVEAHD 356


>gi|313896720|ref|ZP_07830268.1| DEAD-box ATP-dependent RNA helicase CshA [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312974637|gb|EFR40104.1| DEAD-box ATP-dependent RNA helicase CshA [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 423

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 133/370 (35%), Positives = 214/370 (57%), Gaps = 10/370 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA++G+S  +   + + G   PTP+Q + +P +    DV   AQTGTGKT +F+LP  
Sbjct: 2   MPFAEIGVSEALCTLLKNRGISVPTPVQERAVPAMRVGRDVIAQAQTGTGKTLAFLLP-- 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +LEK + +  + + L++ PTRELA Q+A   E      ++   L+ GG   E Q +KL 
Sbjct: 60  -VLEKIKPQGAVVQALVIAPTRELAIQIARVAEPLAAALSIGTTLVYGGADIERQKEKLR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++I TPGR+LDH  RG L + ++  +V+DEAD ML +GFI  ++ +        Q 
Sbjct: 119 RHPQLVIGTPGRLLDHVRRGTLALGSVNKVVLDEADEMLKLGFIEDVETLLGHTAQDYQL 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ--YSKKCALLQQL 238
            LFSATM + + ++++ F+ NP RI++    +T E IE   ++   +    + CA +   
Sbjct: 179 ALFSATMPERIVQLTKRFMHNPARIKIEGEHTTLENIEQIALSVNEEEKLDRLCASI--- 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +++     ++FC  K+    L  +L  +G+ V A+ GN+ Q  R  +L  F+   +Q+
Sbjct: 236 --NEEAPYLAMVFCATKERTHALMMALAGRGYLVDALSGNLTQTQRAFVLRQFRAAKLQI 293

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+AARGLDI  V HV+N+D+P    +YIHRIGRTGRAG  G+A TLV     + + 
Sbjct: 294 LCATDIAARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGARGRAITLVTARQHEKLR 353

Query: 359 AIEKLIEKKV 368
            IE  +++++
Sbjct: 354 KIEAALKERL 363


>gi|156935889|ref|YP_001439805.1| ATP-dependent RNA helicase RhlB [Cronobacter sakazakii ATCC
           BAA-894]
 gi|189040029|sp|A7MQI2|RHLB_ENTS8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|156534143|gb|ABU78969.1| hypothetical protein ESA_03777 [Cronobacter sakazakii ATCC BAA-894]
          Length = 421

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 149/390 (38%), Positives = 218/390 (55%), Gaps = 15/390 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P VV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPVVVQALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   + + L  GG  ++ Q K 
Sbjct: 71  LLSHPAAENRQVNQPRALIMAPTRELAVQIHSDAEPLAEATGIKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYTKQNHVNLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAAT 190

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
            R  +LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 ERLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKK--VDWLNGD--LSSLNPP 381
           ++ AIE  I     V   N D  LS L PP
Sbjct: 367 NLPAIETYIGHSIPVSKYNPDALLSELPPP 396


>gi|91226790|ref|ZP_01261443.1| ATP-dependent RNA helicase SrmB [Vibrio alginolyticus 12G01]
 gi|91188921|gb|EAS75205.1| ATP-dependent RNA helicase SrmB [Vibrio alginolyticus 12G01]
          Length = 407

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 212/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L L   ++ A+ + GY +PT IQ + IP  L   D+   A TGTGKTA+FVLP L  
Sbjct: 5   FAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQY 64

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+    R   P R LIL PTRELA Q+AD      KN  L +  + GG+ ++     L  
Sbjct: 65  LQDFPRRKPGPARILILTPTRELAMQIADQARALAKNTKLNIFTITGGVQYQEHADILAT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+ ++ +  +     IE L++DEADRMLDMGF P +  +++   + +QTL
Sbjct: 125 TQDIVVATPGRLKEYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTL 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLL 239
           LFSAT+  + ++  + + L +P  I+  +P    + I   +  A  A++  K  LL+ ++
Sbjct: 185 LFSATLEGKGVEGFTADLLNDPAEIDAKSPLRERKKIAQWYHRADDAEH--KLELLKHII 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  I+F   ++ +  L   LE        I G + Q  R   +S F++GT+ ++
Sbjct: 243 TQQ--AERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFRDGTVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A ++V   D   +D 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR 360

Query: 360 IEKLIEKKV 368
           + + +++ +
Sbjct: 361 VARYVKEDI 369


>gi|40788370|dbj|BAA34521.2| KIAA0801 protein [Homo sapiens]
          Length = 1058

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 400 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 459

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 460 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 515

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 516 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 575

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232
           V   RQT++FSAT    ++ ++   L  P  ++V   S     +E    V    +   K 
Sbjct: 576 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 635

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L    Q   ++   IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK
Sbjct: 636 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 692

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++
Sbjct: 693 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 752

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             ++   I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   
Sbjct: 753 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 805

Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439
           +   +  +   E +K+ K    +Q++D
Sbjct: 806 FDETEQALA-NERKKLQKAALGLQDSD 831


>gi|269104578|ref|ZP_06157274.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268161218|gb|EEZ39715.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 409

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 139/375 (37%), Positives = 219/375 (58%), Gaps = 9/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LSP ++ A L      PT IQ   IP +++  DV  +AQTG+GKT ++ LP+L
Sbjct: 1   MSFSTLPLSPSLIHA-LPNELNTPTDIQRHAIPALVKHQDVLALAQTGSGKTYAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  + +++    LIL PTREL  QV  +     +   +  A+L GGI  E Q + L 
Sbjct: 60  QQIDPSQPKIQ---ALILVPTRELTTQVHQSLNTIAEKMAIRTAILCGGISQEQQEETLN 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I T GR+LD  ++G++ +++I+  V+DEADR+LDMGF P IQ I   +P  RQT
Sbjct: 117 SQPQLVIATTGRLLDALSKGQVSLSHIKSWVLDEADRLLDMGFWPDIQKIIQQLPAKRQT 176

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLL 239
            LFSAT+ ++L+ +++  L  P RIE    +S  +TI E  ++      SK  AL+   L
Sbjct: 177 ALFSATLPEQLESLTQEVLFKPVRIEAQKTNSVVDTISEQLYLVNKG--SKPQALIA--L 232

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  ++F   + N   LC  L K G    A+HG+ +Q  R +IL++FK   + ++
Sbjct: 233 LKQYPTQQTLVFIGARDNADALCKRLMKAGVQAAALHGHKEQTEREQILADFKAKKLNVV 292

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+ ARG+ I  +  V NFD+P+ A  Y+HR+GRTGRAG +G A +LV   + + + A
Sbjct: 293 IATDVLARGIHIEQLPLVINFDLPSNAATYVHRVGRTGRAGNNGLALSLVCHGETEFLTA 352

Query: 360 IEKLIEKKVDWLNGD 374
           I +L ++ ++  N D
Sbjct: 353 IRQLTQRPLELHNLD 367


>gi|15804370|ref|NP_290410.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 EDL933]
 gi|15833967|ref|NP_312740.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           Sakai]
 gi|168764143|ref|ZP_02789150.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4501]
 gi|217325465|ref|ZP_03441549.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           TW14588]
 gi|32363366|sp|Q8XAT4|RHLB_ECO57 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|12518640|gb|AAG58974.1|AE005609_6 putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
           EDL933]
 gi|13364188|dbj|BAB38136.1| putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
           Sakai]
 gi|189365822|gb|EDU84238.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4501]
 gi|217321686|gb|EEC30110.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           TW14588]
 gi|326347935|gb|EGD71649.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           1044]
          Length = 421

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 212/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHC 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + IEV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG +G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGANGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|320325391|gb|EFW81456.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327468|gb|EFW83481.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330877269|gb|EGH11418.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 445

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 137/369 (37%), Positives = 213/369 (57%), Gaps = 5/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 2   FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G A+VR+  R +IL PTRELA Q     E++ +   +   L+ GG  F+ Q   L +
Sbjct: 62  L-IGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+LI TPGR+L+  N G L + ++E+LV+DEADRMLDMGF   ++ +        QT+
Sbjct: 121 VPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 180

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT     L+++    L++P+ ++VN+ S  A    H  +       K+  L    L 
Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVL--NWLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +T +  IIF N K     L   L    +    +HG+  Q+ R   +   K+G  ++MV
Sbjct: 239 ANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKYQKDRKAAIDRLKQGGAKIMV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V NFD+P   ++Y+HR+GRTGRAG  G A +L+   D   + ++
Sbjct: 299 ATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSV 358

Query: 361 EKLIEKKVD 369
           E+ +++  +
Sbjct: 359 ERYLKQSFE 367


>gi|119186961|ref|XP_001244087.1| hypothetical protein CIMG_03528 [Coccidioides immitis RS]
 gi|118595828|sp|Q1E1N5|RRP3_COCIM RecName: Full=ATP-dependent rRNA helicase RRP3
          Length = 474

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 213/373 (57%), Gaps = 16/373 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+   +  A    GY  PT IQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 50  FKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL-- 107

Query: 63  LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +A +  P++   L+L PTRELA Q++  FE  G   ++  A+++GG+   +Q   L
Sbjct: 108 ----QALMDKPQSMFGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIAL 163

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +++ TPGR+LDH    K   + +++ LV+DEADR+LD+ F P +  I  ++P  R
Sbjct: 164 GKKPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPKER 223

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           +T LFSATM+ +++ +    L NP R+ V  N   + +  +++C +  +         L 
Sbjct: 224 RTYLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQNCLIIPHKHKDIYLIYLL 283

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                Q      IIF         L   L   GF    +HG + Q +R+  L  F+  + 
Sbjct: 284 NEFPGQSV----IIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSR 339

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLDIP V  V N+D+P+ ++ YIHR+GRT RAG+ G+AF+LV + D++ 
Sbjct: 340 NILVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEI 399

Query: 357 IDAIEKLIEKKVD 369
              IE  + K++D
Sbjct: 400 WQRIEAALGKELD 412


>gi|198474199|ref|XP_001356589.2| GA10248 [Drosophila pseudoobscura pseudoobscura]
 gi|198138291|gb|EAL33653.2| GA10248 [Drosophila pseudoobscura pseudoobscura]
          Length = 828

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 132/382 (34%), Positives = 211/382 (55%), Gaps = 34/382 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + G  P+++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L+ 
Sbjct: 402 WNESGFPPEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSW 461

Query: 63  LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           ++      R+      P  +I+ PTRELA Q+ +   K+G+   +   +++GG+  E Q 
Sbjct: 462 IQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETIKFGQPLGIRTVVVVGGLSREEQG 521

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 522 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 581

Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           T                         RQT++F+ATM   +++++ ++L+ P  + + +  
Sbjct: 582 TNLKPDTEEAEDENKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPSTVYIGSMG 641

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
              E  E   V    +  K+  L++ L +  D     IIF NQKK    L   LEK G++
Sbjct: 642 KPTERTEQ-IVYMMGENDKRKKLMEILSRKIDP--PVIIFVNQKKGADVLAKGLEKLGYN 698

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
            C +HG   Q  R   L+  K G   ++VA+D+A RG+DI DV  V N+D+    E+Y H
Sbjct: 699 SCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTH 758

Query: 332 RIGRTGRAGRHGKAFTLVAKED 353
           RIGRTGRAG+ G A + V K+D
Sbjct: 759 RIGRTGRAGKTGCAISFVTKDD 780


>gi|194758757|ref|XP_001961625.1| GF15062 [Drosophila ananassae]
 gi|190615322|gb|EDV30846.1| GF15062 [Drosophila ananassae]
          Length = 819

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 131/382 (34%), Positives = 213/382 (55%), Gaps = 34/382 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +++ G   +++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L+ 
Sbjct: 393 WSESGFPREIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSW 452

Query: 63  LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           ++      R+      P  +I+ PTRELA Q+ +   K+G+   +   +++GG+  E Q 
Sbjct: 453 IQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQG 512

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 513 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 572

Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           +                         RQT++F+ATM   +++++ ++L+ P  + + +  
Sbjct: 573 SNLKPDTEEAEDENKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG 632

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
              E  E   V    +  K+  L++ L +S D     IIF NQKK    L   LEK G++
Sbjct: 633 KPTERTEQ-IVYMMGENDKRKKLMEILSRSIDP--PVIIFVNQKKGADVLAKGLEKLGYN 689

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
            C +HG   Q  R   L+  K G   ++VA+D+A RG+DI DV  V N+D+    E+Y H
Sbjct: 690 SCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTH 749

Query: 332 RIGRTGRAGRHGKAFTLVAKED 353
           RIGRTGRAG++G A + V K+D
Sbjct: 750 RIGRTGRAGKNGVAISFVTKDD 771


>gi|168207624|ref|ZP_02633629.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens E str.
           JGS1987]
 gi|170661029|gb|EDT13712.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens E str.
           JGS1987]
          Length = 478

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 129/364 (35%), Positives = 221/364 (60%), Gaps = 6/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ A+ + GY  P+ +Q  +IP +L+  D+   +QTG+GKTASF +P  
Sbjct: 1   MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + EK     +  + L+L PTRELA QV D     G+   +  A++ G  PF  Q ++L+
Sbjct: 59  -VCEKINIEEKKVQCLVLTPTRELAIQVKDELSNIGRIKKVRCAVIFGKQPFNEQIRELK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+ DH  RG L ++ +  +VIDEAD+ML MGFI  I++I   +   + T
Sbjct: 118 QRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT + E++++ E +++NP  +EV +     + IE   +    + +K  AL + L  
Sbjct: 178 ALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEK-NKGKALWKCLYA 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ I+FCN +  V ++   L+ +G +   +HG+++Q+ R++++ NF++   +++V
Sbjct: 237 YHP--ESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ +  +  V N++VP   E+Y+HRIGRTGRAGR GKA T V   + K+++ +
Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 354

Query: 361 EKLI 364
           E+ I
Sbjct: 355 EEYI 358


>gi|332305447|ref|YP_004433298.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172776|gb|AEE22030.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 412

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 132/367 (35%), Positives = 215/367 (58%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  L L  ++  AV D GY +PT IQ   IP  ++  D+   A TGTGKTA+F+LP+   
Sbjct: 2   FEQLELDDELCRAVADLGYSEPTSIQQLVIPAAMEGKDILASAPTGTGKTAAFLLPVCQF 61

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R      R LIL PTRELA QV +   +  +  ++   ++ GGI +    + LE+
Sbjct: 62  LLDYPRRHPGSTRILILTPTRELAQQVYNQALELSRYTDIVCGVITGGINYGTDKETLEK 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+L+ TPGR+ +H  +      +IE L++DEADRMLDMGF   +  I++   + +Q++
Sbjct: 122 NLDILVATPGRLFEHIEQESFDCRDIECLILDEADRMLDMGFSSIVNQISAEARWRKQSM 181

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALLQQLL 239
           LFSAT+    + + +++ L +P  +E+   SS  E  + H ++        K ALL+ +L
Sbjct: 182 LFSATLEGAGISRFAKDILNDP--VELEAASSRKEQGKIHQWLHLADDAKHKYALLKHIL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  +++ ++F   +  +  L   LE+ GF+VC + G + Q  R   ++ F+ G ++++
Sbjct: 240 THQ--VESAVVFVKTRDRLNELKQILERDGFTVCWLQGEMPQDKRNLSMAKFRSGEVKIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+ ++ HV N+D+P  A+ Y+HRIGRTGRAG  G A +LV   DI  +  
Sbjct: 298 IATDVAARGIDVENISHVINYDMPRTADVYVHRIGRTGRAGNKGTAISLVEAHDIAIVPK 357

Query: 360 IEKLIEK 366
           IE+  E+
Sbjct: 358 IERYTEQ 364


>gi|288556690|ref|YP_003428625.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288547850|gb|ADC51733.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 487

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 136/366 (37%), Positives = 216/366 (59%), Gaps = 10/366 (2%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML--TI 62
           ++ +S +V  A+    Y K T +Q K +P+ +   DV   AQTG+GKTA++ +P+    I
Sbjct: 14  EIQISKEVQKALDLLNYKKLTNVQEKVVPVAIAEKDVIVKAQTGSGKTAAYAIPLCEKVI 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E+ +     P+ L+L PTRELAAQV +     G+   +  A + G   +E Q  +L++ 
Sbjct: 74  WEENK-----PQALVLTPTRELAAQVKEEIINIGRFKRVKAAAVYGKQSYERQKIELKQK 128

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+LDH  +  L   NI  LVIDEAD+ML+MGFI  ++ I + +P  R T+L
Sbjct: 129 NHIVTGTPGRVLDHIEKNSLDTTNIRFLVIDEADQMLNMGFIDQVEAIIARIPANRVTML 188

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    ++++S+  +  P+ IE+N+  ++   I H  +   A   +K  +L+++L ++
Sbjct: 189 FSATFPYGVEELSKRHMSLPEYIEINSTEASRPNINHAIIEVEA--DEKTDVLKKVLITE 246

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  +  V  L  SL +  + V  +HG + Q  R  ++  FKEG  + +VA+
Sbjct: 247 NP-DSCIIFCQTQVEVDKLEKSLLRSQYPVEKLHGGMKQEDRFDVMDRFKEGAFRYLVAT 305

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
            +A RG+D+ D+  V N+DVP   ENY+HRIGRTGRAG+ GKA TLV   +  +ID IE 
Sbjct: 306 GVAGRGIDVADIDLVINYDVPAEKENYVHRIGRTGRAGKKGKARTLVTPSEHGYIDDIED 365

Query: 363 LIEKKV 368
            I +++
Sbjct: 366 FIGEQI 371


>gi|260857814|ref|YP_003231705.1| ATP-dependent RNA helicase RhlB [Escherichia coli O26:H11 str.
           11368]
 gi|260870505|ref|YP_003236907.1| ATP-dependent RNA helicase RhlB [Escherichia coli O111:H- str.
           11128]
 gi|257756463|dbj|BAI27965.1| ATP-dependent RNA helicase RhlB [Escherichia coli O26:H11 str.
           11368]
 gi|257766861|dbj|BAI38356.1| ATP-dependent RNA helicase RhlB [Escherichia coli O111:H- str.
           11128]
 gi|323155182|gb|EFZ41366.1| ATP-dependent RNA helicase rhlB [Escherichia coli EPECa14]
 gi|323177790|gb|EFZ63374.1| ATP-dependent RNA helicase rhlB [Escherichia coli 1180]
          Length = 421

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + IEV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKYRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|50122209|ref|YP_051376.1| ATP-dependent RNA helicase SrmB [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612735|emb|CAG76185.1| ATP-dependent RNA helicase [Pectobacterium atrosepticum SCRI1043]
          Length = 441

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 134/354 (37%), Positives = 200/354 (56%), Gaps = 4/354 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L L   ++ A+ D GY +PT IQ + IP  ++  DV G A TGTGKTA+++LP+L 
Sbjct: 5   NFSELDLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQ 64

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++  R +   PR LIL PTRELA QVAD    +  + +L +A + GG+ +    +   
Sbjct: 65  HLIDFPRKKSGPPRVLILTPTRELAMQVADQARAFAAHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ T GR++ +          +E L++DEADRMLDMGF   I++I     + +QT
Sbjct: 125 ENQDVVVATTGRLMQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184

Query: 181 LLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+  + ++  +E  L  P  IE +      + I   +        K   L  QL 
Sbjct: 185 LLFSATLEGNAIKDFAERLLNEPVEIESDPSRRERKKILQWYYRADDLKHKTTLLCHQLK 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q   T    IIF  +++ V  L   L + G + C + G + Q  R + +    +G + ++
Sbjct: 245 QPDVT--RSIIFVRKRERVHELVSWLHEAGINSCYLEGEMVQAKRNEAIKRMSDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+AARG+DI DV HVFNFD+P  A+ Y+HRIGRTGRAGR G A + V   D
Sbjct: 303 VATDIAARGIDIDDVSHVFNFDLPRTADTYLHRIGRTGRAGRKGCAISFVEAHD 356


>gi|10434683|dbj|BAB14343.1| unnamed protein product [Homo sapiens]
          Length = 765

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 138/363 (38%), Positives = 208/363 (57%), Gaps = 1/363 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 187 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 246

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 247 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 306

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 307 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 366

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 367 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 426

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 427 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 486

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 487 VATDVAARGLDIEGVKTVINFTMPNTIKHYDHRVGRTARAGRAGRSVSLVGEDERKMLKE 546

Query: 360 IEK 362
           I K
Sbjct: 547 IVK 549


>gi|296118823|ref|ZP_06837399.1| ATP-dependent RNA helicase DeaD [Corynebacterium ammoniagenes DSM
           20306]
 gi|295968312|gb|EFG81561.1| ATP-dependent RNA helicase DeaD [Corynebacterium ammoniagenes DSM
           20306]
          Length = 407

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 129/353 (36%), Positives = 207/353 (58%), Gaps = 5/353 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +G++ ++  A+   G      IQ  T+P+ L   D+ G A+TG GKT  F +P+L  +  
Sbjct: 1   MGVAAEICDALAARGITHTFAIQELTLPIALNGTDLIGQARTGMGKTYGFGVPLLDRVFD 60

Query: 66  GRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                 +   PR L++ PTRELA QVA++         + +A ++GG  FEAQ + L  G
Sbjct: 61  AADVPELDGSPRALVVVPTRELAVQVANDLSIAAAQIPVRIATILGGRDFEAQQEALRAG 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPFTRQTL 181
            DV++ TPGRILD + R  L ++ + +LV+DEAD MLD+GF+P ++ I  +L     QT+
Sbjct: 121 VDVVVGTPGRILDLYQRKNLRLDKVSVLVLDEADEMLDLGFLPDVEKILAALKDSPHQTM 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   + +++  F+  P  I  +  SS         +   A    K  +L ++LQ 
Sbjct: 181 LFSATMPGAIVRLARTFMNRPVHIRADAESSAPTHASTQQIIFQAHRMDKLPVLSRILQV 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  ++F   K+    +   L   GF+V A+HG+++Q++R + L+ F++GT+ ++VA
Sbjct: 241 PERGRT-LVFTRTKRTAAQVAQDLADLGFTVGAVHGDLNQQAREQALAGFRDGTVPILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           +D+A+RG+D+ DV HV N+ VP+ A  Y+HRIGRTGRAG  G A TLV  +++
Sbjct: 300 TDVASRGIDVEDVTHVINYQVPDDAMTYVHRIGRTGRAGHSGTAITLVGYDEL 352


>gi|326335491|ref|ZP_08201678.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692257|gb|EGD34209.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 572

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 220/371 (59%), Gaps = 10/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61
           F  LGLS  ++ A+ D G+ +P+ +Q   IP++L    D+  +AQTGTGKTA+F  P+L 
Sbjct: 4   FETLGLSAPLLEAIDDLGFERPSEVQQAAIPVLLAVPTDMVALAQTGTGKTAAFGFPLLH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           ++        + + LIL PTREL  Q+A   ++Y K    + +  + GG   E Q + L+
Sbjct: 64  LINPTE---HITQGLILAPTRELCLQIASELKQYAKYMPQVHIVAIYGGASIEEQARNLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA +++ TPGR+ D   R  + + +I   ++DEAD ML+MGF   I+ I +  P  + T
Sbjct: 121 KGAHIIVATPGRMQDMMRREFVSITHINYCILDEADEMLNMGFYEDIRAILAETPREKNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLL 239
            LFSATM  E+ K+++ F+ +PK I +   +  ++ + H C++    Q   +   L++L 
Sbjct: 181 WLFSATMPTEVAKIAKEFMHHPKEITIGHKNQASDNVLHECYIVNGRQ---RYEALKRLA 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +  ++ + ++FC  K++   +   L + G++  A+HG++ Q  R  ++  F+   IQ++
Sbjct: 238 DANPSIFS-VVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKGFRAKQIQML 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ D+ HV ++ +P+  E Y HR GRTGRAG+ G +  ++ K + K I  
Sbjct: 297 VATDVAARGIDVDDITHVIHYQLPDEIETYTHRSGRTGRAGKSGVSMVILTKSETKRIKT 356

Query: 360 IEKLIEKKVDW 370
           IE++I+K  ++
Sbjct: 357 IERIIQKTFEY 367


>gi|163789554|ref|ZP_02183992.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
 gi|159875086|gb|EDP69152.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
          Length = 483

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 132/360 (36%), Positives = 212/360 (58%), Gaps = 7/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  +S ++V A+    Y  PT +Q + IPL L+  DV   +QTG+GKT S+ +P+   
Sbjct: 7   FKEFAISDEIVTALTSLRYFHPTKVQEEVIPLALEGKDVIVESQTGSGKTVSYGVPLCET 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    +   P+ L+L PTRELA QV ++    G+   +    + G   F+ Q  +L++ 
Sbjct: 67  VDWEENK---PQVLVLVPTRELAIQVKEDLMNIGRLKRVKATAVYGKASFDTQKSELKQK 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGR+LDH  +G   +  I+ LV+DEAD ML+MGF   ++ I + +P  RQTLL
Sbjct: 124 SHIVVGTPGRVLDHLQKGTFKVEKIDCLVLDEADEMLNMGFADQVEAIINFLPAERQTLL 183

Query: 183 FSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSATM  E+++++  ++ Q+ + I + T   +   I    V    Q  KK   L  LL  
Sbjct: 184 FSATMPKEIERIASFYMKQDKQSIVIETTELSKPKIIQSSVK--VQEDKKEQQLLDLLTV 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++   + +IFCN ++ V NL   L K G  +  IHG + Q  R  ++ +F++G  + +VA
Sbjct: 242 ENA-DSCMIFCNTQEAVNNLYTFLNKAGLPIDKIHGGMVQEDRFSVMDDFRQGRFRYLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI +V HV NFDVP   E+++HR GRTGRAG+ G A TLV  ++ K  + ++
Sbjct: 301 TDVAARGIDIENVTHVVNFDVPVEKESFVHRTGRTGRAGKTGMALTLVTPKEEKWWNEVK 360


>gi|293605139|ref|ZP_06687530.1| ATP-independent RNA helicase DbpA [Achromobacter piechaudii ATCC
           43553]
 gi|292816463|gb|EFF75553.1| ATP-independent RNA helicase DbpA [Achromobacter piechaudii ATCC
           43553]
          Length = 462

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 144/383 (37%), Positives = 220/383 (57%), Gaps = 10/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P ++  +   G+ + TPIQ +++PL+L+  D+   A+TG+GKTA+F L +L  
Sbjct: 6   FSTLPLLPALLDNLQSLGFEQMTPIQAQSLPLILEGRDIIAQAKTGSGKTAAFGLGVLQK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+  R     P+ L++ PTRELA QVA    +  +   N+ +  L GG P   Q + L R
Sbjct: 66  LDPARL---APQALLVCPTRELADQVAQELRRLARLIPNVKILTLCGGAPARPQAESLAR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI DH  RG L ++ +  LV+DEADRM+DMGF   I  I S  P  RQTL
Sbjct: 123 GAHLVVGTPGRIQDHLERGSLDLSGLTTLVLDEADRMVDMGFYDDIVAIASHCPAKRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D ++K+S  FL+NP  ++V      A  IE  F         +   + +LL  
Sbjct: 183 LFSATYPDNIRKLSARFLRNPAEVKVEA-QHDASRIEQIFYEI--DEKDRLDAVARLLAH 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   + FCN K    +L   L+  G S  A++G+++QR R +IL  F   +  ++VA
Sbjct: 240 FRPVST-LAFCNTKIRSHDLVERLQADGISAQALNGDLEQRERDEILIQFANQSCAVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++G V N DV    E ++HRIGR+GR  + G A +L + ++++  + +E
Sbjct: 299 TDVAARGLDIQNLGAVINVDVTKDTEVHVHRIGRSGRGDQKGLALSLCSPDEMRWANLVE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
           +     + W  GD+ SL P  ++
Sbjct: 359 QYQGTPLKW--GDIKSLKPKADR 379


>gi|260809351|ref|XP_002599469.1| hypothetical protein BRAFLDRAFT_122755 [Branchiostoma floridae]
 gi|229284748|gb|EEN55481.1| hypothetical protein BRAFLDRAFT_122755 [Branchiostoma floridae]
          Length = 623

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 210/373 (56%), Gaps = 15/373 (4%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEK 65
           V+  + +A + KPTPIQ +  P+ LQ  D+ GIAQTG+GKT +++LP +        LE+
Sbjct: 121 VMEEIRNAQFEKPTPIQAQGWPVALQGRDIVGIAQTGSGKTLAYMLPAIVHINHQPYLER 180

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
           G      P  L+L PTRELA QV     K+G++  +    + GG P   Q + LERG +V
Sbjct: 181 GDG----PICLVLTPTRELAQQVQQEASKFGRSSRIKNTCVFGGSPKGPQIRDLERGVEV 236

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
            I TPGR++D    GK  M     LV+DEADRMLDMGF P I+ I   +   RQTL++SA
Sbjct: 237 CIATPGRLIDFLEAGKTNMRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMYSA 296

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLLQSQ 242
           T   E+++++E FL+   +I +     +A       V    ++ K      LL++++  +
Sbjct: 297 TWPKEVRQLAEEFLKEYTQINIGALQLSANHNILQIVDVVQEHEKDHKLSRLLEEIMGEK 356

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     IIF   K+ V +L   + + G+    IHG+  Q  R  +L+ F+ G   ++VA+
Sbjct: 357 EN--KTIIFVETKRRVDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNQFRSGKAPILVAT 414

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLD+ D+  V NFD PN AE+Y+HRIGRT R+ R G A+T     ++K    +  
Sbjct: 415 DVASRGLDVSDIKFVINFDYPNSAEDYVHRIGRTARSDRTGTAYTFFTPSNLKQTKDLVS 474

Query: 363 LIEKKVDWLNGDL 375
           ++++    +N  L
Sbjct: 475 VLQEAQQQVNPRL 487


>gi|158257008|dbj|BAF84477.1| unnamed protein product [Homo sapiens]
          Length = 1032

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232
           V   RQT++FSAT    ++ ++   L  P  ++V   S     +E    V    +   K 
Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L    Q   ++   IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK
Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++
Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             ++   I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   
Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779

Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439
           +   +  +   E +K+ K    +Q++D
Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805


>gi|152996141|ref|YP_001340976.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150837065|gb|ABR71041.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 452

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 148/380 (38%), Positives = 227/380 (59%), Gaps = 20/380 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L  +V+ ++ + G+   + IQ +T+P+ L  +D+ G AQTGTGKTA+F++ M+
Sbjct: 71  MRFHDLNLPDRVIKSIAEMGFEYCSEIQAETLPMTLLGYDIIGQAQTGTGKTAAFLIAMI 130

Query: 61  T-----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +      LE+ RA     R LI+ PTRELA Q+AD   K   N +L V  L+GG+ +E Q
Sbjct: 131 SDFLDYPLEEKRAN-NFARGLIIAPTRELAIQIADEAVKLTSNCHLNVVTLVGGLSYEKQ 189

Query: 116 NKKLE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
              LE    D+L+ TPGR+LD     K+ +  +E LV+DEADRML MGFIP +++I  + 
Sbjct: 190 KIALETENVDILVATPGRLLDFARSRKVQLGKVECLVLDEADRMLSMGFIPDVKSIIRMT 249

Query: 175 PF--TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           P   TRQT+LFSAT   ++Q +++ +   PK + V    +T + I+       A   +K 
Sbjct: 250 PHKETRQTMLFSATFPKDIQALAQQWTYFPKEVSVVPKEATNQNIDQVIYTVEA--DQKW 307

Query: 233 ALLQQLLQSQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            +LQQL++     KNG    IIF N++    +L   L K   +   + G + Q  R+K L
Sbjct: 308 PVLQQLIE-----KNGGQRTIIFANRRDETRDLYERLRKANINCAILSGEVAQDKRVKTL 362

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +NFKEG IQ++VA+D+A RG+ + +V  V N+ +P   E+Y+HRIGRTGR G  GK+ + 
Sbjct: 363 ANFKEGIIQVLVATDVAGRGIHVDNVELVVNYSLPEDPEDYVHRIGRTGRGGETGKSVSF 422

Query: 349 VAKEDIKHIDAIEKLIEKKV 368
            +++D   I  IE+++ + +
Sbjct: 423 ASEDDAFMIPEIERVVGESI 442


>gi|88856781|ref|ZP_01131435.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
 gi|88813949|gb|EAR23817.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
          Length = 499

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 141/400 (35%), Positives = 225/400 (56%), Gaps = 15/400 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L +   +V A+   G ++P PIQ +TIP+ L   D+ G A+TGTGKT  F LP+L
Sbjct: 1   MTFSELNIDQDMVDALATKGILEPFPIQTQTIPMGLAGQDIIGQAKTGTGKTLGFGLPVL 60

Query: 61  TIL----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L    E G       + LI+ PTREL  QVA++      N +  +A + GG  +E Q 
Sbjct: 61  QSLGINPEPGV------KALIVVPTRELCVQVAEDLVLAASNRSTKIAAIYGGKAYEGQV 114

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++++ GA V++ TPGR+LD  ++  L + +I+++V+DEAD+MLD+GF+  I+ + +  P 
Sbjct: 115 EQIKDGAQVIVGTPGRLLDLASQRMLSLKDIKVMVLDEADKMLDLGFLADIEKLFAQTPP 174

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS--TAETIEHCFVATYAQYSKKCAL 234
           TR T+LFSATM   +  ++  F+  P  I    P    T + I+H  V   A    K  +
Sbjct: 175 TRHTMLFSATMPGPIVALARRFMNKPIHIRATDPDEGLTQKNIKH--VVYRAHNLDKDEV 232

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + ++LQS+   K  ++F   K+    L   L  +GF+  A+HG+++Q  R + ++ FK G
Sbjct: 233 IARILQSEGRGKT-VVFTRTKRAAAKLVEELNDRGFNAAAVHGDLNQEQRERAMAAFKAG 291

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +++A+D+AARG+D+ DV HV N  +P+  + Y+HR GRTGRAG+ G A T V   D+
Sbjct: 292 KKDILIATDVAARGIDVNDVTHVINHTIPDDHDTYLHRAGRTGRAGKTGVAVTFVDWADM 351

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
                I K ++  +       SS      ++DI +    R
Sbjct: 352 LKWTHINKALDMGIPEPTETYSSSPHLYSELDIPEGTKGR 391


>gi|298208330|ref|YP_003716509.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
 gi|83848251|gb|EAP86121.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
          Length = 623

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 127/349 (36%), Positives = 210/349 (60%), Gaps = 8/349 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
           G+ +P+ +Q K IP++L++  D+  +AQTGTGKTA+F  P++  ++ G  + +    LIL
Sbjct: 2   GFTEPSEVQEKAIPILLEKDTDIVALAQTGTGKTAAFGFPLIQKIDAGYKKTQ---GLIL 58

Query: 79  EPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
            PTREL  Q+ +  + Y K    L    + GG     Q K+++RGA +++ TPGR+ D  
Sbjct: 59  SPTRELCLQITNELQNYSKYVKGLNPVAVYGGASITEQAKQIKRGAQIIVATPGRMQDMI 118

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
            RG + ++ I+  V+DEAD ML+MGF   I  I S  P  + T LFSATM  E+ +++++
Sbjct: 119 RRGLVDISEIQYCVLDEADEMLNMGFYDDITEILSHSPEDKFTWLFSATMPKEVARIAKD 178

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
           F+ NP  I V + +   E + H +     +   K   L++L  +   + + +IFC  K++
Sbjct: 179 FMNNPVEITVGSKNKGTENVSHEYYLVGGRDRYKA--LKRLCDANPEIFS-VIFCRTKRD 235

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
              +   L + G+S  AIHG++ Q  R  ++ +F+   IQ++VA+D+AARG+D+ D+ HV
Sbjct: 236 TQKVAEQLIQDGYSAGAIHGDLSQNQRDLVMRSFRTRQIQMLVATDVAARGIDVDDITHV 295

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
            ++ +P+  E Y HR GRTGRAG+ G + T+  K +++ I AIEK I++
Sbjct: 296 IHYTLPDEPEVYTHRSGRTGRAGKSGTSMTIATKSEMRKIKAIEKRIQR 344


>gi|254565677|ref|XP_002489949.1| Protein involved in rRNA processing [Pichia pastoris GS115]
 gi|238029745|emb|CAY67668.1| Protein involved in rRNA processing [Pichia pastoris GS115]
 gi|328350360|emb|CCA36760.1| ATP-dependent RNA helicase [Pichia pastoris CBS 7435]
          Length = 478

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 146/398 (36%), Positives = 229/398 (57%), Gaps = 23/398 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F D GL P+++ A     Y KPTPIQ ++IP  L+  D+ G+AQTG+GKTA+F +P+L +
Sbjct: 74  FNDFGLVPEILEACEKLKYTKPTPIQAESIPYALKGRDIIGLAQTGSGKTAAFAIPVLQS 133

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           + E+           +L PTRELA Q+ + F+  G    L    ++GG+    Q K L R
Sbjct: 134 LYEQATPFF----CCVLAPTRELAYQIKETFDSLGSGMGLRSVCIVGGMDMIDQAKDLMR 189

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR++DH    K   +  ++ L++DEADR+LD+ F P I  +  L+P  R T
Sbjct: 190 KPHVIVATPGRLMDHLENTKGFSLKALKYLIMDEADRLLDLEFGPAIDKVLKLIPRERST 249

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT++++K+    L +P ++ V++  ST +++    +     Y K   L+  L +
Sbjct: 250 YLFSATMTNKIEKLQRASLVDPIKVSVSSKYSTVDSLIQSLMVVPDGY-KNTFLIYLLNK 308

Query: 241 SQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            Q+  K+ IIF   C   +    L   ++   FS   +HG ++Q  R+  L+ FK     
Sbjct: 309 YQN--KSIIIFTRTCAHAQRTALLARLMD---FSAIPLHGQLNQSQRLGALNKFKARERT 363

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIP V  V NFD+P  ++ YIHR+GRT RAGR G++ +LV + D++ I
Sbjct: 364 ILVATDVAARGLDIPMVDVVINFDIPTDSKAYIHRVGRTARAGRSGRSISLVTQYDLELI 423

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
             +E ++  K   L  D+    PP ++I ++ HN   K
Sbjct: 424 LRVESVLGMK---LPKDV----PPRDEI-LSLHNTVEK 453


>gi|62089534|gb|AAH92240.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Mus musculus]
          Length = 1027

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232
           V   RQT++FSAT    ++ ++   L  P  ++V   S     +E    V    +   K 
Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L    Q   ++   IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK
Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++
Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             ++   I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   
Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779

Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439
           +   +  +   E +K+ K    +Q++D
Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805


>gi|156367199|ref|XP_001627306.1| predicted protein [Nematostella vectensis]
 gi|156214212|gb|EDO35206.1| predicted protein [Nematostella vectensis]
          Length = 669

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 153/392 (39%), Positives = 222/392 (56%), Gaps = 29/392 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ L   ++  V  AGY KPTP+Q   IP+V  + D+   AQTG+GKTA+F++P+L+ 
Sbjct: 194 FEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKTAAFLIPILSR 253

Query: 62  -----------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                      I   GR R + P  L+L PTRELA Q+ D   K+         ++ GG 
Sbjct: 254 IYMEGPPAPPDIKHAGRRR-QYPICLVLAPTRELAVQIFDEARKFSYRSLCRPCVVYGGA 312

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q ++L+R   +L+ TPGR++D  +RG++ +++I  LV+DEADRMLDMGF P I+ I
Sbjct: 313 DIGSQLRELDRNCHLLVATPGRLVDMMDRGRVGLDSIRFLVLDEADRMLDMGFEPQIRRI 372

Query: 171 TSL--VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                +P T  RQTL+FSAT   E+Q ++ +FL+N   + V    ST+E I    V    
Sbjct: 373 VDQDSMPKTGIRQTLMFSATFPKEIQMLARDFLENYIFLAVGKVGSTSENITQKVVWV-D 431

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           ++ K+  LL  LL +    +  ++F   KK    L   L K G+   +IHG+  QR R +
Sbjct: 432 EFDKRSFLLD-LLNASGPQQLTLVFVETKKGADALEMFLAKDGYYCTSIHGDRSQREREE 490

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G   ++VA+ +AARGLDIP+V HV NFD+P   E Y+HRIGRTGR G  G A 
Sbjct: 491 ALRTFRCGDTPILVATAVAARGLDIPNVKHVINFDLPTDIEEYVHRIGRTGRVGHTGLAT 550

Query: 347 TL-------VAKEDIKHIDAIEKLIEKKVDWL 371
           +        VAKE    +D +E+  ++   WL
Sbjct: 551 SFFNHKNKNVAKE---LMDILEESKQEIPSWL 579


>gi|253690374|ref|YP_003019564.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|259585615|sp|C6DHF5|RHLB_PECCP RecName: Full=ATP-dependent RNA helicase rhlB
 gi|251756952|gb|ACT15028.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 430

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 151/417 (36%), Positives = 227/417 (54%), Gaps = 22/417 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P+V+ A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKTLAFLASTFHY 70

Query: 63  L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L         +   PR LI+ PTRELA Q+  + E       L + L  GG  ++ Q K 
Sbjct: 71  LLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LENGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAA 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q LL+ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F +G 
Sbjct: 248 QTLLE-EEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGN 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG+ G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV-------DWLNGDLSS----LNPPLEKIDIAQHNHARKNNPIPQ 401
           ++ AIE  I   +       D L  DL +      PP       +HN+A + +  P+
Sbjct: 367 NLPAIETYIGHSIPVSKYNSDALMNDLPAPKRLTRPPRSNNGPRRHNNAPRRSGAPR 423


>gi|303317380|ref|XP_003068692.1| ATP-dependent rRNA helicase RRP3, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240108373|gb|EER26547.1| ATP-dependent rRNA helicase RRP3, putative [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 474

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 213/373 (57%), Gaps = 16/373 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+   +  A    GY  PT IQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 50  FKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL-- 107

Query: 63  LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +A +  P++   L+L PTRELA Q++  FE  G   ++  A+++GG+   +Q   L
Sbjct: 108 ----QALMDKPQSMFGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIAL 163

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +++ TPGR+LDH    K   + +++ LV+DEADR+LD+ F P +  I  ++P  R
Sbjct: 164 GKKPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPKER 223

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           +T LFSATM+ +++ +    L NP R+ V  N   + +  +++C +  +         L 
Sbjct: 224 RTYLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQNCLIIPHKHKDIYLIYLL 283

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                Q      IIF         L   L   GF    +HG + Q +R+  L  F+  + 
Sbjct: 284 NEFPGQSV----IIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSR 339

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLDIP V  V N+D+P+ ++ YIHR+GRT RAG+ G+AF+LV + D++ 
Sbjct: 340 NILVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEI 399

Query: 357 IDAIEKLIEKKVD 369
              IE  + K++D
Sbjct: 400 WQRIEAALGKELD 412


>gi|227114353|ref|ZP_03828009.1| ATP-dependent RNA helicase RhlB [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 429

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 150/412 (36%), Positives = 224/412 (54%), Gaps = 22/412 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P+V+ A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKTLAFLASTFHY 70

Query: 63  L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L         +   PR LI+ PTRELA Q+  + E       L + L  GG  ++ Q K 
Sbjct: 71  LLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAAA 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q LL+ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F +G 
Sbjct: 248 QTLLE-EEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGN 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG+ G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV-------DWLNGDLSS----LNPPLEKIDIAQHNHARKN 396
           ++ AIE  I   +       D L  DL +      PP       +HN  R++
Sbjct: 367 NLPAIETYIGHGIPVSKYNSDALMNDLPAPKRLTRPPRSNNGPRRHNAPRRS 418


>gi|195115088|ref|XP_002002099.1| GI14145 [Drosophila mojavensis]
 gi|193912674|gb|EDW11541.1| GI14145 [Drosophila mojavensis]
          Length = 837

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 132/382 (34%), Positives = 210/382 (54%), Gaps = 34/382 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +++ G  P+++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L+ 
Sbjct: 411 WSESGFPPEIIEIIDSVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSW 470

Query: 63  LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           ++      R+      P  +I+ PTRELA Q+ +   K+G+   +   +++GG+  E Q 
Sbjct: 471 IQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETIKFGQPLGIRTVVVVGGLSREEQG 530

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 531 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 590

Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           T                         RQT++F+ATM   +++++ ++L+ P  + + +  
Sbjct: 591 TNLKPDTEEAEDEKKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG 650

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
              E      V    +  K+  L+Q L  S       IIF NQKK    L   LEK G++
Sbjct: 651 KPTERTNQ-IVYMMGENDKRKKLMQIL--SAGIEPPVIIFVNQKKGADVLAKGLEKLGYN 707

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
            C +HG   Q  R   L+  K G   ++VA+D+A RG+DI DV  V N+D+    E+Y H
Sbjct: 708 SCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTH 767

Query: 332 RIGRTGRAGRHGKAFTLVAKED 353
           RIGRTGRAG+ G A + V K+D
Sbjct: 768 RIGRTGRAGKTGVAISFVTKDD 789


>gi|330831669|ref|YP_004394621.1| ATP-dependent RNA helicase rhlB [Aeromonas veronii B565]
 gi|328806805|gb|AEB52004.1| ATP-dependent RNA helicase rhlB [Aeromonas veronii B565]
          Length = 416

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 146/388 (37%), Positives = 229/388 (59%), Gaps = 17/388 (4%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-- 63
           +GL P+V+  +   G+   TPIQ  ++PL+++ HD+ G AQTGTGKT +F+      L  
Sbjct: 1   MGLEPEVLAGLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTIAFLAATFNYLLT 60

Query: 64  ---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               K R  V  PR +I+ PTRELA Q+ ++ +    +  L + L  GG  ++ Q   LE
Sbjct: 61  HPLTKPRL-VNQPRAIIMAPTRELAVQIYNDADSIAASTGLKLGLAYGGEGYDKQLAVLE 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTR 178
           +G D+LI T GRI+D+F    + ++NI+++V+DEADRM D+GFI  I+ +   +P    R
Sbjct: 120 QGVDILIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFDLGFIKDIRFLFRRMPPATER 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237
            ++LFSAT++  +Q+++   + +P+ ++V     T   I E  F   Y     K  LL  
Sbjct: 180 LSMLFSATLSLRVQELAYEHMNHPEHVQVEPEQMTGVRIKEELF---YPSNEDKMLLLLS 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++ +   K  I+F N K    ++   LE  G  V  + G++ Q+ RMKIL +F +G + 
Sbjct: 237 LMEEEWPEK-AIVFANTKHVCEDVHAWLENDGHRVGLLTGDVPQKKRMKILEDFTKGALD 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IPDV HVFN+D+P+ AE+Y+HRIGRTGRAG+ G + +L  ++   ++
Sbjct: 296 ILVATDVAARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKSGHSISLACEDYAFNL 355

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPP 381
            AIE+ I   +     D    L  + PP
Sbjct: 356 PAIEEYIHHAIPVSKYDREALLDDVTPP 383


>gi|332234495|ref|XP_003266442.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Nomascus
           leucogenys]
          Length = 1031

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232
           V   RQT++FSAT    ++ ++   L  P  ++V   S     +E    V    +   K 
Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L    Q   ++   IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK
Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++
Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             ++   I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   
Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779

Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439
           +   +  +   E +K+ K    +Q++D
Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805


>gi|297295088|ref|XP_002804561.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like isoform 2
           [Macaca mulatta]
 gi|297295090|ref|XP_001109331.2| PREDICTED: probable ATP-dependent RNA helicase DDX46-like isoform 1
           [Macaca mulatta]
          Length = 1032

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232
           V   RQT++FSAT    ++ ++   L  P  ++V   S     +E    V    +   K 
Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L    Q   ++   IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK
Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++
Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             ++   I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   
Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779

Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439
           +   +  +   E +K+ K    +Q++D
Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805


>gi|221052953|ref|XP_002257851.1| RNA helicase [Plasmodium knowlesi strain H]
 gi|193807683|emb|CAQ38387.1| RNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 546

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 134/376 (35%), Positives = 220/376 (58%), Gaps = 18/376 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +  +++ ++ + G+ KPT IQ K +P   Q+ D+ G+++TG+GKTA F++P   I
Sbjct: 141 FRDLNICEEILQSIDELGWKKPTAIQRKMLPCAFQQRDIIGLSETGSGKTACFIIP---I 197

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++ R + +    L++ PTREL  Q+A +F+  G N  + +  + GG+    Q+  L + 
Sbjct: 198 LQELRQKRQSFFALVISPTRELCIQIAQHFQALGSNLLVNICTIFGGVDIVTQSLNLAKK 257

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            ++++ TPGRILDH N  K   + N++ LV DEAD++L + F   I  +  ++P  R T 
Sbjct: 258 PNIIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSLDFEASINKLLLILPQKRTTF 317

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLL 239
           LFSATMT  + K+ +  L+NP +IEV+   STA T+   + F+    +Y+  C+L     
Sbjct: 318 LFSATMTKSVAKLKKASLKNPIKIEVSNKYSTASTLIENYIFIPLKYKYTYLCSLCFHF- 376

Query: 240 QSQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               + +  IIF   C   + +   C +L   G     +HG + Q  R+  L++FK    
Sbjct: 377 ----SSRCIIIFANTCATAQKINFFCRNL---GLKSICLHGKLTQNQRLSSLNSFKSKRY 429

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++++ + ARGLD+ D+  V NFD+ +  E YIHR+GRT RAGR GK+ T V + D+++
Sbjct: 430 NILISTQVGARGLDLKDIKIVINFDLCSCKE-YIHRVGRTARAGRTGKSITFVTQYDVEN 488

Query: 357 IDAIEKLIEKKVDWLN 372
             AIEK++ KK+D  N
Sbjct: 489 FLAIEKMLNKKIDKFN 504


>gi|145300503|ref|YP_001143344.1| ATP-dependent RNA helicase SrmB [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853275|gb|ABO91596.1| ATP-dependent RNA helicase SrmB [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 407

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 135/368 (36%), Positives = 210/368 (57%), Gaps = 4/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  L P +  A+ + G+ +PT IQ   +   L   D+   A TGTGKTA+FVLP L  
Sbjct: 5   FDDFDLHPALNRALAEMGFTRPTTIQQMVLEPALDGRDILASAPTGTGKTAAFVLPALQH 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +    R LIL PTRELA QV  + +    + NL++  +IGG+  E Q   L +
Sbjct: 65  LLDFPRRKPGPCRMLILTPTRELALQVTAHAKALAVHTNLSIETIIGGVSHEEQLPALTK 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L++ ++ +   ++IE+LV+DEADRMLDMGF+  +  I +   + + T+
Sbjct: 125 TTDIVVATPGRLLEYIDKEEFESHDIEVLVLDEADRMLDMGFVKDVNRIVAEARYRKHTM 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+    L+K +   L  P  +    P S    I   +V      + K ALL  +L+
Sbjct: 185 LFSATLEGAGLEKFANEILNEPVELHAEPPRSERRPITQ-WVHLADDAAHKLALLIHILK 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +T K  I+F   ++ +  L   L+  G     I G ++Q  R++ +  F  G +  +V
Sbjct: 244 DPETQK-AIVFVRTRERLAELSGQLQAAGIPCAWIRGEMEQSKRVESIRKFHAGEVPFLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+P+V HV N+D+P   + Y+HRIGRTGRAG  G A +LV   D+  +  I
Sbjct: 303 ATDVAARGIDLPNVSHVINYDMPYGTDVYVHRIGRTGRAGNRGCAISLVEAHDMGMVAKI 362

Query: 361 EKLIEKKV 368
           E+  E+++
Sbjct: 363 ERYTEERL 370


>gi|32363421|sp|Q9PA24|RHLB_XYLFA RecName: Full=ATP-dependent RNA helicase rhlB
          Length = 543

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 138/375 (36%), Positives = 225/375 (60%), Gaps = 10/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F+ L L P ++  +  AG+   TPIQ  T+P+ L   D+ G AQTGTGKT +F++ ++
Sbjct: 9   LNFSSLDLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVV 68

Query: 61  TILEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L      V      PR LIL PTRELA Q+ ++  K+G N  L  AL+ GG+ ++ Q 
Sbjct: 69  NRLLSRPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQR 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L +GADV+I TPGR++D+  + +++ +   EI V+DEADRM D+GFI  I+ I   +P
Sbjct: 129 EMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLP 188

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
              +RQTLLFSAT++  + +++  ++  P+++   T + T   +       +    +K  
Sbjct: 189 ERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETETVTTTRVRQRIY--FPAEEEKIP 246

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  LL   + M+  ++F N K  V  +  +L++ G+ V  + G++ QR R  +L+ F++
Sbjct: 247 LLLGLLSRSEGMRT-MVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQK 305

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +  
Sbjct: 306 GQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERY 365

Query: 354 IKHIDAIEKLIEKKV 368
              +  IE  IE+K+
Sbjct: 366 AMSLPDIEAYIEQKI 380


>gi|319648379|ref|ZP_08002595.1| DeaD protein [Bacillus sp. BT1B_CT2]
 gi|317389458|gb|EFV70269.1| DeaD protein [Bacillus sp. BT1B_CT2]
          Length = 481

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 130/362 (35%), Positives = 211/362 (58%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS  +  A+   GY  PT +Q + IP  L++ DV   ++TG+GKTA+F +P+  +
Sbjct: 6   FKEYALSGDITKALDHLGYKHPTAVQSEVIPAALKKRDVVVKSRTGSGKTAAFGIPLCEL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E    +   P+ LIL PTRELAAQV ++    G+   +  A + G   FE Q  +L++ 
Sbjct: 66  TEWEENK---PQALILTPTRELAAQVKEDLTNIGRYKRIKAAAVYGKSSFERQKTELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G   +  ++ LVIDEAD+ML+MGFI  +  I   +P  R T+L
Sbjct: 123 CHIVVGTPGRVLDHIEKGTFPLEKLKYLVIDEADKMLNMGFIDQVGAIIRHLPEERLTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT  ++++++S  ++++P +IE+    +T   IEH  +      +   +LL  L+  +
Sbjct: 183 FSATFPEDVEQLSLQYMKDPLKIEMKAGGTTTADIEHQLI--IVDENDPFSLLVDLIIVE 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + I+FC  ++ V  L   L   G+    IHG + Q  R  +++ F+ G  + ++A+
Sbjct: 241 NP-DSCIVFCRTQEQVNELQRRLAGLGYPCAKIHGGMPQEDRFAVMNRFRRGAFRYLIAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+++P   E+Y+HR GRTGRAG  GKA TL +  +   I  IE 
Sbjct: 300 DVAARGIDIENITHVINYELPLDQESYVHRTGRTGRAGSRGKAITLASPREKGMIADIED 359

Query: 363 LI 364
            I
Sbjct: 360 YI 361


>gi|328772988|gb|EGF83025.1| hypothetical protein BATDEDRAFT_29115 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 483

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 138/375 (36%), Positives = 211/375 (56%), Gaps = 19/375 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA+      V+  V   G+  PT IQ +  P+ L   DV G+A+TG+GKT ++ LP +  
Sbjct: 57  FAEASFPSYVLKEVESLGFSAPTSIQSQGWPMALSGRDVVGVAETGSGKTLAYTLPSIVH 116

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L+ G      P  LIL PTRELA Q+     K+G +  +    L GG+P   Q 
Sbjct: 117 INAQPLLKPGDG----PIVLILAPTRELAIQIQVECNKFGSSSRIKNTCLYGGVPKGPQM 172

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + LERG ++ I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 173 RDLERGIEICIATPGRLIDMLESGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 232

Query: 177 TRQTLLFSATMTDELQKVSEN----FLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            RQTL++SAT   E+Q ++ +    F+Q N   +E++   +  + +E C   ++ +  + 
Sbjct: 233 DRQTLMWSATWPKEVQALARDYQKEFIQVNVGSMELSASHNITQIVEIC--PSHDKRHRL 290

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL+ ++ + D  +  IIF   K+   ++   L   GF   AIHG+  Q+ R  ++  F
Sbjct: 291 YKLLEDIMSNAD--QKTIIFTGTKRTADDITRDLRHDGFPALAIHGDKKQQERDWVMQEF 348

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   +++A+D+AARGLD+ DV  V NFD PN  E+Y+HRIGRTGRA   G A+TL + 
Sbjct: 349 KSGKTPILIATDVAARGLDVKDVKFVINFDFPNNIEDYVHRIGRTGRANNKGTAYTLFSP 408

Query: 352 EDIKHIDAIEKLIEK 366
           ++ K    + K++E+
Sbjct: 409 DNFKSARDLVKILEE 423


>gi|296192757|ref|XP_002744211.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Callithrix jacchus]
          Length = 1032

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232
           V   RQT++FSAT    ++ ++   L  P  ++V   S     +E    V    +   K 
Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L    Q   ++   IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK
Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++
Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             ++   I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   
Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779

Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439
           +   +  +   E +K+ K    +Q++D
Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805


>gi|229490988|ref|ZP_04384821.1| dead/deah box helicase [Rhodococcus erythropolis SK121]
 gi|229322104|gb|EEN87892.1| dead/deah box helicase [Rhodococcus erythropolis SK121]
          Length = 385

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 138/343 (40%), Positives = 200/343 (58%), Gaps = 16/343 (4%)

Query: 34  LVLQRHDVCGIAQTGTGKTASFVLPML---TILEKGRARVR-MPRTLILEPTRELAAQVA 89
           + L   D+ G A+TG GKT  F +P+L      E G A +   PR LI+ PTREL  QVA
Sbjct: 1   MALAGDDLIGQARTGMGKTFGFGVPLLHRIVTAENGTAVLDGTPRALIIVPTRELCIQVA 60

Query: 90  DNFEKYGK-----NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLM 144
            + E   K     +  L V  + GG P+EAQ   L++G DV++ TPGR+LD  N+  L++
Sbjct: 61  RDLENASKYLRVGDRGLQVLPIYGGRPYEAQISALQKGVDVVVGTPGRLLDLANQSHLIL 120

Query: 145 NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKR 204
             + +LV+DEAD MLD+GF+P I+ +  +VP  RQT+LFSATM   +  ++  FL  P  
Sbjct: 121 GKVGVLVLDEADEMLDLGFLPDIERLMGMVPDKRQTMLFSATMPGPIITLARTFLTQPTH 180

Query: 205 IEVNTPSSTA---ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNL 261
           I      S+A    T +H +    A    K  ++ ++LQ++      +IF   K+    +
Sbjct: 181 IRAEEAESSAVHDRTSQHIY---RAHALDKAEMVARVLQAEGRGAT-MIFTRTKRTAQKV 236

Query: 262 CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321
              L ++GFSV A+HG++ Q +R K L  F+ G + ++VA+D+AARG+DI DV HV N+ 
Sbjct: 237 ADDLAERGFSVGAVHGDLGQIAREKALKGFRNGKVDVLVATDVAARGIDIDDVTHVINYQ 296

Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
            P   + Y+HRIGRTGRAGR G A TLV  +DI     I+K +
Sbjct: 297 CPEDEKTYVHRIGRTGRAGRTGIAVTLVDWDDIPRWQLIDKAL 339


>gi|23336902|tpg|DAA00076.1| TPA_exp: Prp5-like DEAD-box protein [Homo sapiens]
          Length = 1032

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232
           V   RQT++FSAT    ++ ++   L  P  ++V   S     +E    V    +   K 
Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L    Q   ++   IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK
Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++
Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             ++   I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   
Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779

Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439
           +   +  +   E +K+ K    +Q++D
Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805


>gi|283832032|ref|ZP_06351773.1| ATP-dependent RNA helicase SrmB [Citrobacter youngae ATCC 29220]
 gi|291071651|gb|EFE09760.1| ATP-dependent RNA helicase SrmB [Citrobacter youngae ATCC 29220]
          Length = 442

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 139/354 (39%), Positives = 210/354 (59%), Gaps = 6/354 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ A+ + G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  
Sbjct: 6   FSELELDESLLDALQEKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVA++  +  KN +L VA + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAMQVAEHARELAKNTHLDVATITGGVAYMNHMEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +        + +E L++DEADRMLDMGF   I++I     + +QT+
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCHAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTM 185

Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALLQQLL 239
           LFSAT+  D ++  +E  L++P  +EV+   ST E  + H F         K A+L  LL
Sbjct: 186 LFSATLEGDAIKDFAERLLEDP--VEVSADPSTRERKKIHQFYYRADDIEHKTAMLIHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +  ++ I+F  +++ V  L   L + G + C + G + Q  R + +    +G + ++
Sbjct: 244 KQPEATRS-IVFVRKRERVHELAGWLRQAGINNCYLEGEMVQNKRNEAIKRLTDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+AARG+DIPDV HVFNFD+P   + Y+HRIGRTGRAGR G A +LV   D
Sbjct: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDAYLHRIGRTGRAGRKGTAISLVEAHD 356


>gi|153839366|ref|ZP_01992033.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ3810]
 gi|149747114|gb|EDM58102.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ3810]
          Length = 407

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 211/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L L   ++ A+ + GY +PT IQ + IP  L   D+   A TGTGKTA+FVLP L  
Sbjct: 5   FAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQY 64

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+    R   P R LIL PTRELA QVAD      K   L +  + GG+ ++     L  
Sbjct: 65  LQDFPRRKPGPARILILTPTRELAMQVADQARALAKKTKLNIFTITGGVQYQEHADILAT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+ ++ +  +     IE LV+DEADRMLDMGF P +  +++   + +QTL
Sbjct: 125 TQDIVVATPGRLREYIDAERFDCRAIEWLVLDEADRMLDMGFAPTVDRLSNECRWRKQTL 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLL 239
           LFSAT+  + ++  + + L  P  I+  +P    + I   +  A  A++  K ALL+ ++
Sbjct: 185 LFSATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADSAEH--KLALLKHII 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  I+F   ++ +  L   LE        I G + Q  R   ++ F++GT+ ++
Sbjct: 243 TEQ--AERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFRDGTVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A ++V   D   +D 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR 360

Query: 360 IEKLIEKKV 368
           + + +++ +
Sbjct: 361 VARYVKEDI 369


>gi|160420299|ref|NP_666087.3| probable ATP-dependent RNA helicase DDX46 [Mus musculus]
          Length = 1031

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232
           V   RQT++FSAT    ++ ++   L  P  ++V   S     +E    V    +   K 
Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L    Q   ++   IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK
Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++
Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             ++   I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   
Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779

Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439
           +   +  +   E +K+ K    +Q++D
Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805


>gi|312371167|gb|EFR19420.1| hypothetical protein AND_22552 [Anopheles darlingi]
          Length = 1161

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 152/457 (33%), Positives = 248/457 (54%), Gaps = 36/457 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G+S K    +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 490 WAHCGVSRKEFEVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRH 549

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  +I+ PTREL  Q+  + +K+ K+ NL    + GG     Q 
Sbjct: 550 ILDQPPLEDGDG----PIAIIMTPTRELCMQIGKDIKKFSKSLNLRTVCVYGGTGISEQI 605

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 606 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDN 665

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA--TYAQYSKK 231
           +   RQT++FSAT   +++ ++   L+ P  ++V   S   + +E   V     A++ K 
Sbjct: 666 IRPDRQTVMFSATFPRQMEALARRILKKPIEVQVGGRSVVCKEVEQHVVVLEDEAKFFKL 725

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL  L Q Q ++   I+F ++++N   L   L K  ++  ++HG IDQ  R   +++F
Sbjct: 726 LELLG-LYQEQGSI---IVFVDKQENADILLKDLMKASYACMSLHGGIDQFDRDSTMNDF 781

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K+G ++L++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  
Sbjct: 782 KQGRVKLLIATSVAARGLDVKQLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAWTFLTP 841

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI-----------P 400
           E  ++   I + +E     +  DL  L    +    AQ    +K +              
Sbjct: 842 EQGRYAGDIIRALELSGGTVPEDLRQL---WDTYKSAQEAEGKKVHTGGGFSGKGFKFDA 898

Query: 401 QKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQE 437
           Q++   + RKK    QK+ + L++S+    L+QDI +
Sbjct: 899 QEAAAVNERKK---MQKAALGLQDSDDEEDLEQDIDQ 932


>gi|285019640|ref|YP_003377351.1| ATP-dependent RNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283474858|emb|CBA17357.1| putative atp-dependent rna helicase protein [Xanthomonas
           albilineans]
          Length = 570

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 137/375 (36%), Positives = 222/375 (59%), Gaps = 10/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L P ++  +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++
Sbjct: 9   LTFSAFDLQPALLAGLEGAGFTRCTPIQALTLPVALPGRDVAGQAQTGTGKTLAFLVAVM 68

Query: 61  TILEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L    A    +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q 
Sbjct: 69  NRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQR 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L++G DV+I TPGR++D+  + K++ ++  EI V+DEADRM D+GFI  I+ +   +P
Sbjct: 129 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
              TRQTLLFSAT++  + +++   +  P+++ V T S TA  +       Y    ++  
Sbjct: 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRI---YFPADEEKL 245

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L   L S+      ++F N K  V  +  +LE+ G+ V  + G++ Q+ R  +L+ F++
Sbjct: 246 TLLLGLLSRSEGARTMVFVNTKAFVERVARALERNGYRVGVLSGDVPQKKRETLLNRFQK 305

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++++V +D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +  
Sbjct: 306 GQLEILVVTDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERY 365

Query: 354 IKHIDAIEKLIEKKV 368
              +  IE  IE+K+
Sbjct: 366 AMSLPDIEAYIEQKI 380


>gi|269138721|ref|YP_003295422.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|267984382|gb|ACY84211.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|304558724|gb|ADM41388.1| ATP-dependent RNA helicase DbpA [Edwardsiella tarda FL6-60]
          Length = 457

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 138/352 (39%), Positives = 206/352 (58%), Gaps = 8/352 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY   TP+Q  T+P +L   DV   A+TG+GKTA+F L +L  ++  R    + ++L+L 
Sbjct: 22  GYQTMTPVQAATLPAILAGKDVRAQAKTGSGKTAAFGLGLLQHIDANRF---ITQSLVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    K  +   N+ V  L GG+PF AQ   L     V++ TPGR+LDH  
Sbjct: 79  PTRELADQVATALRKLARYMPNIKVLTLCGGVPFGAQRDSLIHAPHVIVATPGRLLDHLK 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +  + +  ++ L++DEADRMLDMGF   +  + S  P  RQTLLFSAT   E+  +S   
Sbjct: 139 KETVSLEALQTLILDEADRMLDMGFADALDEVISWAPEKRQTLLFSATWPAEIAAISRRI 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            ++P  IE++T       +E  F         K  LLQ LL SQ    + ++FCN KK+ 
Sbjct: 199 QRDPLTIEIDTHGEL-PAVEQRFYEV--SRGGKVGLLQTLL-SQYQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +  +LE    SV A+HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QAVYDALEGSEQSVLALHGDMEQRDRDQTLVRFANGSSRVLVATDVAARGLDIKALEMVI 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           N+++    E ++HRIGRT RAG  G A +L A E+ +  +A+E+++  ++ W
Sbjct: 315 NYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRANALEEMLGARLQW 366


>gi|148709275|gb|EDL41221.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Mus musculus]
          Length = 963

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 306 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 365

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 366 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 421

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 422 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 481

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232
           V   RQT++FSAT    ++ ++   L  P  ++V   S     +E    V    +   K 
Sbjct: 482 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 541

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L    Q   ++   IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK
Sbjct: 542 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 598

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++
Sbjct: 599 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 658

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             ++   I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   
Sbjct: 659 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 711

Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439
           +   +  +   E +K+ K    +Q++D
Sbjct: 712 FDETEQALA-NERKKLQKAALGLQDSD 737


>gi|197119959|ref|YP_002140386.1| ATP-dependent RNA helicase [Geobacter bemidjiensis Bem]
 gi|197089319|gb|ACH40590.1| ATP-dependent RNA helicase [Geobacter bemidjiensis Bem]
          Length = 381

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 142/384 (36%), Positives = 223/384 (58%), Gaps = 11/384 (2%)

Query: 1   MDFADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M FA LGL P+++ A+ +   Y +P PIQ K IP VL+  DV  IA+TG+GKTASF+LP+
Sbjct: 1   MSFASLGLHPELLSAIAEQPEYKRPYPIQSKVIPAVLKGRDVIAIARTGSGKTASFILPL 60

Query: 60  LTILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQN 116
           L ++  +     R    LIL PTRELAAQ+ +  ++ G +    +    + GG+    Q 
Sbjct: 61  LQLIHCRDAGERRRLSALILVPTRELAAQIEEVAKQLGGHLKPRVKTGAVFGGVAINPQM 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L +G ++LI TPGR+++   +  + ++++  LV+DEADR+    F   +Q I +L+P 
Sbjct: 121 ILL-KGIELLIATPGRLIELVAQNSVQLSSVATLVLDEADRLYAEDFQEELQQILALLPS 179

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT   E+++++ + L +P RIE+   ++ A+ I           S+K  LL+
Sbjct: 180 KRQNLLFSATFPPEVERLAASLLTDPMRIEIEATATEAQLITQQIY--LVDSSRKGPLLR 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++S D  K  ++F + +K   N+   L   G S    H  + Q  R   L+ FK G +
Sbjct: 238 YLIKSGD-WKQVLVFASSQKRADNVTRKLVANGISASTFHSGMSQGGRTSALARFKSGEL 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+DLA+RG+D+  + HV N+++P    +Y HRIGRTGRA   G A TL+  ED+ H
Sbjct: 297 RVLVATDLASRGIDVQYLPHVVNYELPRSPIDYQHRIGRTGRAETAGVAVTLLCPEDLAH 356

Query: 357 IDAIEKLIEK---KVDWLNGDLSS 377
              IEK + +   ++D    DLS+
Sbjct: 357 FKVIEKRLGQRLPRIDTAELDLSA 380


>gi|195051805|ref|XP_001993174.1| GH13670 [Drosophila grimshawi]
 gi|193900233|gb|EDV99099.1| GH13670 [Drosophila grimshawi]
          Length = 518

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 218/369 (59%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLGLS  +  A  +  +  P+ IQ + IP+ LQ  DV G+A+TG+GKT +F LP+L
Sbjct: 57  LTWKDLGLSETLCKACDELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPIL 116

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      L+L PTRELA Q+ + FE  G    +   +++GG+   AQ  +L 
Sbjct: 117 HALLENPQRYF---ALVLTPTRELAFQIGEQFEALGSGIGIKCCVIVGGMDMVAQGLQLA 173

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGR++DH  N     +  I+ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 174 KKPHIIIATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 233

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L++P ++EV+    T + ++  ++    +Y  K   L  +L
Sbjct: 234 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYLFIPVKY--KDVYLVHIL 291

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK     ++
Sbjct: 292 -NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 350

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR G+A T+V++ DI+    
Sbjct: 351 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITIVSQYDIELYQR 410

Query: 360 IEKLIEKKV 368
           IE+L+ K++
Sbjct: 411 IEQLLGKQL 419


>gi|41327773|ref|NP_055644.2| probable ATP-dependent RNA helicase DDX46 [Homo sapiens]
 gi|332821955|ref|XP_517939.3| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Pan
           troglodytes]
 gi|116241326|sp|Q7L014|DDX46_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46; AltName: Full=PRP5 homolog
 gi|15126766|gb|AAH12304.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapiens]
 gi|119582645|gb|EAW62241.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_d [Homo
           sapiens]
          Length = 1031

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232
           V   RQT++FSAT    ++ ++   L  P  ++V   S     +E    V    +   K 
Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L    Q   ++   IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK
Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++
Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             ++   I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   
Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779

Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439
           +   +  +   E +K+ K    +Q++D
Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805


>gi|294893710|ref|XP_002774608.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239880001|gb|EER06424.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 520

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 142/394 (36%), Positives = 216/394 (54%), Gaps = 21/394 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F   G    ++  +  AG+V PTPIQI+  P+ +   D+ GIA+TG+GKT +F+LP +  
Sbjct: 113 FEQAGFPDYILHELAQAGFVAPTPIQIQGWPVAMSGRDMVGIAETGSGKTLAFLLPAIVH 172

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L++G      P  L++ PTRELA Q+ +   K+GK+  +      GG+P   Q 
Sbjct: 173 INAQPYLQRGDG----PIVLVMAPTRELAVQIQEECNKFGKSSKIKNTCCYGGVPRGPQA 228

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  G ++ I TPGR++D     +  +  +  LV+DEADRMLDMGF P I+ ITS +  
Sbjct: 229 RDLSEGVEICIATPGRLIDFLESQRTNLRRVTYLVLDEADRMLDMGFEPQIRKITSQIRP 288

Query: 177 TRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            RQTLL+SAT   E+Q ++ +   + P  I V T +  A      +V    +Y K+  L 
Sbjct: 289 DRQTLLWSATWPKEVQGLARDLCREEPVHINVGTLTLKACHNVTQYVDVVQEYEKRDRLK 348

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L +  D  K  +IF + K+   +L  +L   G+    IHG+  Q  R  +L  FK G 
Sbjct: 349 VLLERVMDGSKL-LIFTDTKRGADDLTRTLRMDGWPALCIHGDKKQEERDWVLHEFKSGK 407

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +M+A+D+A+RGLD+ D+ HV N+D P + E+Y+HRIGRTGRAG  G A+T    + IK
Sbjct: 408 SPIMIATDVASRGLDVKDIRHVVNYDFPGQIEDYVHRIGRTGRAGCKGNAYTFFTPDKIK 467

Query: 356 HI-DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
              D ++ L E           +++P LE++ + 
Sbjct: 468 MARDLVQILREAN--------QTVSPELERLSLT 493


>gi|91179150|gb|ABE27759.1| vasa [Chlamys farreri]
          Length = 801

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 138/362 (38%), Positives = 217/362 (59%), Gaps = 17/362 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + G+    +  ++ A + KPTP+Q  +IP+V+   D+   AQTG+GKTA+F+LP+LT 
Sbjct: 354 FEEAGIYDGFMTNLVKAHFEKPTPVQKYSIPIVMSGRDLMACAQTGSGKTAAFLLPVLTG 413

Query: 63  LEK----GRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           + K    G A   V+ P+ L++ PTRELA Q+ ++  K+     L   +L GG     Q 
Sbjct: 414 MMKNGLTGSAFSDVQEPQALVVAPTRELALQIFNDARKFSHGTMLRPVVLYGGTSVGYQL 473

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV-- 174
           K++E GA +++ TPGR++D  N+GK+ +  ++ L++DEADRMLDMGF P I+ I   +  
Sbjct: 474 KQVENGAHIVVGTPGRLIDVINKGKISLAKLKYLILDEADRMLDMGFGPDIKKIVHELGT 533

Query: 175 --PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN-TPSSTAETIEHCFVATYAQYSKK 231
                RQTL+FSAT  +E+QK++ +FL +   + V     + ++  +H F     Q  +K
Sbjct: 534 PEKTERQTLMFSATFPEEIQKLAGDFLNDYLFLTVGRVGGACSDVTQHFFQVDRQQKRQK 593

Query: 232 -CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            C +L     S+      ++F  QK+N   L   L + GF   +IHG+  QR R + L +
Sbjct: 594 LCDIL-----SESGADKTLVFVEQKRNADFLASYLSESGFPTTSIHGDRLQREREEALRD 648

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK+G   +++A+ +AARGLDIP+V HV N+D+P   + Y+HRIGRTGR G  GKA +  +
Sbjct: 649 FKQGKAPILIATSVAARGLDIPNVKHVINYDLPQSIDEYVHRIGRTGRCGNLGKATSFFS 708

Query: 351 KE 352
           ++
Sbjct: 709 ED 710


>gi|149039843|gb|EDL93959.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Rattus norvegicus]
          Length = 940

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232
           V   RQT++FSAT    ++ ++   L  P  ++V   S     +E    V    +   K 
Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L    Q   ++   IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK
Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++
Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             ++   I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   
Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779

Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439
           +   +  +   E +K+ K    +Q++D
Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805


>gi|91206539|sp|Q59LU0|DBP2_CANAL RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 562

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 132/360 (36%), Positives = 201/360 (55%), Gaps = 11/360 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V D G+ KPTPIQ +  P+ L   D+ GIA TG+GKT S+ LP +  
Sbjct: 129 FDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVH 188

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L+ G      P  L+L PTRELA Q+     K+GK+  +    + GG P   Q 
Sbjct: 189 INAQPQLQYGDG----PIVLVLAPTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQI 244

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG ++ I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 245 RDLARGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 304

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E+Q+++ ++L +P ++ + +    A       V    ++SK+  L++
Sbjct: 305 DRQTLMWSATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVK 364

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L  + +   N I +F + K+    +   L   G+   AIHG+ +Q  R  +L  F++G 
Sbjct: 365 HLESALNEKDNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGK 424

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+AARG+D+  + HV N+D+P   E+Y+HRIGRTGR G  G A +   + + K
Sbjct: 425 TSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSK 484


>gi|322696755|gb|EFY88543.1| ATP-dependent rRNA helicase RRP3 [Metarhizium acridum CQMa 102]
          Length = 478

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 148/419 (35%), Positives = 235/419 (56%), Gaps = 14/419 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F  LG+   +  A     Y  PTPIQ K+IP+ LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 59  FKQLGIVDSLCEACESLNYKFPTPIQEKSIPVALQNRDIIGLAETGSGKTAAFALPILQA 118

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+K +        L+L PTRELA Q+  +FE  G + +L  A+++GG+    Q   L +
Sbjct: 119 LLDKPQPLF----GLVLAPTRELAHQIGQSFEALGSSISLRCAVIVGGLDMVPQAVALGK 174

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR++DH  + K   +  ++ LV+DEADR+LDM F P I  +   +P  R+T
Sbjct: 175 KPHIIVATPGRLVDHLEKTKGFSLRTLKYLVMDEADRLLDMDFGPAIDKLLKFIPRERRT 234

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            LFSAT++ +++ +    L++P R+ V  N   + +  +++  V    Q  K   L+   
Sbjct: 235 YLFSATLSSKVESLQRASLRDPVRVSVSSNKYQTVSTLLQNLLV--IPQMRKDTYLI--Y 290

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L ++ T K+ IIF         +   L   GF    +HG + Q +R+  L+ F+ GT  +
Sbjct: 291 LVNEFTGKSTIIFTRTVWETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFRSGTRDI 350

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  V  V N+D+P  ++ YIHR+GRT RAG+ G A +LV + DI+   
Sbjct: 351 LVATDVAARGLDISKVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISLVTQYDIEVFQ 410

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKSTGFDRRKKNYSSQ 416
            IE  + KK+D    +   +     +++ AQ  HAR +   + +K  G  +R K  S +
Sbjct: 411 RIEAALGKKLDIYPTEKEEVLAFQHRVEEAQ-RHARIEMKNLSEKRHGKGKRAKGTSKR 468


>gi|198423018|ref|XP_002125988.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
           [Ciona intestinalis]
          Length = 718

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 153/432 (35%), Positives = 227/432 (52%), Gaps = 27/432 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  + +S  ++ A+ +  YV PTPIQ   IP+ L   D+C  A TGTGKTA+F+LP+L
Sbjct: 171 LGFQQMNISRPLLKAISEINYVTPTPIQQAAIPIGLLGRDICACAATGTGKTAAFMLPVL 230

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L        + R L L PTRELA QV        ++ NL + L  GG+  ++Q   L 
Sbjct: 231 ERLLYRTQSTPITRVLCLVPTRELAVQVYSVTHHLAQHSNLRICLAAGGLDMKSQEAALR 290

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G D++I TPGR++DH  N     +  +EIL++DEADRMLD  F   +  I  L    RQ
Sbjct: 291 QGPDIVIATPGRLIDHLHNTPSFDLQMVEILILDEADRMLDEFFEDQMNEIIKLCSHHRQ 350

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM++++Q+++   L+NP +I VN+ +  A  +   F+            +   L
Sbjct: 351 TMLFSATMSEQVQELAAVSLKNPVKIFVNSNTDVAPFLRQEFIRIRETREGDREAIVAAL 410

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+  + N ++F   KK    +   L   G     +HGN+ Q  R++ L  FK G I ++
Sbjct: 411 CSRSFISNVLVFTQTKKQAHRMHIVLGLLGLKAGELHGNLSQGQRLESLKRFKNGDIDIL 470

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +DLAARGLDI +V  V N  +PN  ++Y+HR+GRT RAG+ G++ +LV + + K +  
Sbjct: 471 VCTDLAARGLDIENVKTVINLTMPNTQQHYVHRVGRTARAGKSGRSVSLVGETERKLLKE 530

Query: 360 IEK--------------LIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPI 399
           I K              +I K  D LN      GD+  +    EK  IA  N  +K   I
Sbjct: 531 IVKFAKNPVKSRVVPPDVISKFRDKLNEIESEVGDVMKMEAQ-EKQVIASENQVKKAEKI 589

Query: 400 -----PQKSTGF 406
                P+K   F
Sbjct: 590 IKGEAPEKRAWF 601


>gi|15839285|ref|NP_299973.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa 9a5c]
 gi|9107937|gb|AAF85493.1|AE004075_8 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
          Length = 544

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 138/375 (36%), Positives = 225/375 (60%), Gaps = 10/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F+ L L P ++  +  AG+   TPIQ  T+P+ L   D+ G AQTGTGKT +F++ ++
Sbjct: 10  LNFSSLDLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVV 69

Query: 61  TILEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L      V      PR LIL PTRELA Q+ ++  K+G N  L  AL+ GG+ ++ Q 
Sbjct: 70  NRLLSRPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQR 129

Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L +GADV+I TPGR++D+  + +++ +   EI V+DEADRM D+GFI  I+ I   +P
Sbjct: 130 EMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLP 189

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
              +RQTLLFSAT++  + +++  ++  P+++   T + T   +       +    +K  
Sbjct: 190 ERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETETVTTTRVRQRIY--FPAEEEKIP 247

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  LL   + M+  ++F N K  V  +  +L++ G+ V  + G++ QR R  +L+ F++
Sbjct: 248 LLLGLLSRSEGMRT-MVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQK 306

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +  
Sbjct: 307 GQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERY 366

Query: 354 IKHIDAIEKLIEKKV 368
              +  IE  IE+K+
Sbjct: 367 AMSLPDIEAYIEQKI 381


>gi|51473847|ref|YP_067604.1| ATP-dependent RNA helicase RhlE [Rickettsia typhi str. Wilmington]
 gi|51460159|gb|AAU04122.1| probable ATP-dependent RNA helicase RhlE [Rickettsia typhi str.
           Wilmington]
          Length = 407

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 214/364 (58%), Gaps = 13/364 (3%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +  LS +++ A+      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP++    
Sbjct: 3   NFNLSEELIIALETMNITEPTEIQKQSIPVAMSGADILASSQTGSGKTLAYLLPLIDAFI 62

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           K +        LIL PTRELA Q+     K    Y +  A+LIGG P   Q  +L++   
Sbjct: 63  KNKTTA-----LILVPTRELATQIHSTLNKVTIAYKINSAVLIGGEPMFKQFMQLKKNPK 117

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           V+I TPGRI++H NR  L + +I I+V+DE DRMLDMG    +++I   +P  RQ L+FS
Sbjct: 118 VIIGTPGRIIEHLNRRSLKIEHIGIIVLDEMDRMLDMGMKEQLEDINKFLPEKRQVLMFS 177

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQSQ 242
           ATM   +  VS+ +L NP RI V   +  A  I  E   V+   ++S+   L +QL    
Sbjct: 178 ATMPKHIIAVSQKYLNNPVRIMVGATNKAAAEIKQELMHVSNKEKFSE---LTKQL---G 231

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           + + + IIF   K++   L   L+ +     AIHG++ Q  R +++ +F++   ++MVA+
Sbjct: 232 NRVGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQSQRARVILSFRKLNHRIMVAT 291

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +D+    AI++
Sbjct: 292 DVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGAIGHALSFISPDDVVRWRAIDR 351

Query: 363 LIEK 366
           L+ K
Sbjct: 352 LVNK 355


>gi|312373567|gb|EFR21282.1| hypothetical protein AND_17289 [Anopheles darlingi]
          Length = 744

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 141/388 (36%), Positives = 218/388 (56%), Gaps = 11/388 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF D GL   ++  +   G+ KPT IQ + +P+ L   D+ GIAQTG+GKT ++V+P L
Sbjct: 118 MDFEDGGLPSYIMEELKRQGFSKPTAIQAQGMPIALSGRDMVGIAQTGSGKTLAYVVPSL 177

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             ++   +  R   P  LIL PTRELA Q+      +G   +     + GG P   Q + 
Sbjct: 178 VHIQHQESIRRGDGPIALILAPTRELAQQIQQVATDFGSRVSANNTCVFGGAPKGPQIRD 237

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERGA+++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 238 LERGAEIVIATPGRLIDFLERGITNLKRCTYLVLDEADRMLDMGFEPQIRKIMGQIRPDR 297

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCA 233
           Q L++SAT   E+++++E FL +  +I + + + +A     + ++ C    Y +  K   
Sbjct: 298 QVLMWSATWPKEVRQLAEEFLADYIQINIGSLNLSANHNILQIVDVC--EDYEKDQKLMK 355

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL ++    DT    IIF   K+ V ++   + + G+   AIHG+  Q+ R  +LS F+ 
Sbjct: 356 LLTEISAEPDTKT--IIFVETKRRVDDITRIVNRNGWRAVAIHGDKSQQERDYVLSAFRN 413

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    +
Sbjct: 414 GRQGILVATDVAARGLDVEDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSN 473

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
               + +  ++ +    +N  L  L  P
Sbjct: 474 ANKANDLINVLREANQVINPRLVELAKP 501


>gi|294675271|ref|YP_003575887.1| DEAD/DEAH box helicase [Prevotella ruminicola 23]
 gi|294472504|gb|ADE81893.1| ATP-dependent RNA helicase, DEAD box family [Prevotella ruminicola
           23]
          Length = 600

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 132/367 (35%), Positives = 220/367 (59%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+  ++  A+ + G+V P P+Q   IP +L   +DV  +AQTGTGKTA+F +P+L 
Sbjct: 4   FEELGVCEQIRKAIEELGFVHPMPVQEAVIPYLLGNENDVIALAQTGTGKTAAFGIPLLE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            ++  +   R  + L+L PTREL  Q+AD+   + K  + + V  + GG   E Q + L+
Sbjct: 64  RIDTTQ---RYTQALVLSPTRELCLQIADDLRDFAKYMDGVHVEAVYGGAAIEPQMRALK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G ++++ TPGR++D  +RG   +  +  +V+DEAD ML+MGF   I  I   +     T
Sbjct: 121 KGVEIIVATPGRLVDLMHRGIARLEQVTNIVLDEADEMLNMGFSDSINEIFESLSADHHT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSATM+ E+++V++ +L + K I V + +  AE++ H +    A+   K   L++++ 
Sbjct: 181 LMFSATMSKEVERVAKKYLHDYKEIVVGSRNEGAESVNHIYYMVNAK--DKYLALKRIVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   IIFC  K     +   L K G++  ++HG+++Q+ R + +  F+    QL+V
Sbjct: 239 FYPRI-FAIIFCRTKVETQEVADKLIKDGYNAESLHGDLNQQQRDQTMQKFRNHLTQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV NF +P+  E+Y HR GRTGRAG+ G + ++V   +   I  I
Sbjct: 298 ATDVAARGLDVDDLTHVINFGLPDDIESYTHRSGRTGRAGKKGTSISIVHSREKFKIRNI 357

Query: 361 EKLIEKK 367
           EK+I K+
Sbjct: 358 EKIIGKE 364


>gi|313801696|gb|EFS42936.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
 gi|313809686|gb|EFS47420.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
 gi|313827484|gb|EFS65198.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
 gi|313830023|gb|EFS67737.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
 gi|313838410|gb|EFS76124.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
 gi|314918026|gb|EFS81857.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
 gi|314920401|gb|EFS84232.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
 gi|314956494|gb|EFT00782.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
 gi|314957338|gb|EFT01441.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
 gi|314967660|gb|EFT11759.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
 gi|314975747|gb|EFT19842.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
 gi|315095792|gb|EFT67768.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1]
 gi|315098853|gb|EFT70829.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
 gi|327442653|gb|EGE89307.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
 gi|327452701|gb|EGE99355.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
 gi|327453458|gb|EGF00113.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
 gi|328761493|gb|EGF75017.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL099PA1]
          Length = 564

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 146/398 (36%), Positives = 225/398 (56%), Gaps = 24/398 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L  
Sbjct: 55  FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 114

Query: 63  L----EKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    ++G   +     P+ L++ PTRELA QV+ +           V  + GG+ +E+Q
Sbjct: 115 ITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQ 174

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G DV++ TPGR+LD   R  L ++++ I+V+DEAD MLD+GF+P ++N+    P
Sbjct: 175 IDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTP 234

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYAQYSKKC 232
            +RQT+LFSATM   +  ++ + L+ P  +     +T ++  +T +  +    A    K 
Sbjct: 235 ASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY---QAHPLDKI 291

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            ++ ++LQ+ D  K  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+
Sbjct: 292 EIIGRILQANDVEKV-IIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFR 350

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   
Sbjct: 351 HGEATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWA 410

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           D+       KLI K    LN +LS    P+E    + H
Sbjct: 411 DVTRW----KLINKA---LNLELSE---PVETYSTSPH 438


>gi|85540944|sp|Q569Z5|DDX46_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46
          Length = 1032

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232
           V   RQT++FSAT    ++ ++   L  P  ++V   S     +E    V    +   K 
Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L    Q   ++   IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK
Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++
Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             ++   I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   
Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779

Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439
           +   +  +   E +K+ K    +Q++D
Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805


>gi|20806137|ref|NP_620798.1| probable ATP-dependent RNA helicase DDX46 [Rattus norvegicus]
 gi|81890303|sp|Q62780|DDX46_RAT RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46; AltName: Full=Helicase of
           117.4 kDa
 gi|897915|gb|AAC52210.1| RNA helicase [Rattus norvegicus]
 gi|78174325|gb|AAI07591.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Rattus norvegicus]
          Length = 1032

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232
           V   RQT++FSAT    ++ ++   L  P  ++V   S     +E    V    +   K 
Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L    Q   ++   IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK
Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++
Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             ++   I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   
Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779

Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439
           +   +  +   E +K+ K    +Q++D
Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805


>gi|124249330|ref|NP_694705.2| probable ATP-dependent RNA helicase DDX27 [Mus musculus]
 gi|74140985|dbj|BAE22077.1| unnamed protein product [Mus musculus]
 gi|74210620|dbj|BAE23664.1| unnamed protein product [Mus musculus]
 gi|123240386|emb|CAM17306.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Mus musculus]
 gi|148674548|gb|EDL06495.1| mCG14602, isoform CRA_c [Mus musculus]
          Length = 760

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 214/364 (58%), Gaps = 3/364 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 184 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 243

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++  +  ++T  L +GG+  ++Q   L 
Sbjct: 244 ERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALR 303

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 304 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 363

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQL 238
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+     +   + A++  L
Sbjct: 364 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 423

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L    T  + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I +
Sbjct: 424 LMRTFT-DHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDI 482

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K + 
Sbjct: 483 LVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLK 542

Query: 359 AIEK 362
            I K
Sbjct: 543 EIVK 546


>gi|168751737|ref|ZP_02776759.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753673|ref|ZP_02778680.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4401]
 gi|168768057|ref|ZP_02793064.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775673|ref|ZP_02800680.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4196]
 gi|168780675|ref|ZP_02805682.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786614|ref|ZP_02811621.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC869]
 gi|168800996|ref|ZP_02826003.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC508]
 gi|195938068|ref|ZP_03083450.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4024]
 gi|208809105|ref|ZP_03251442.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812626|ref|ZP_03253955.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819057|ref|ZP_03259377.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397506|ref|YP_002273298.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4115]
 gi|254795778|ref|YP_003080615.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           TW14359]
 gi|261225554|ref|ZP_05939835.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255600|ref|ZP_05948133.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. FRIK966]
 gi|291285195|ref|YP_003502013.1| ATP-dependent RNA helicase RhlB [Escherichia coli O55:H7 str.
           CB9615]
 gi|226739531|sp|B5YY28|RHLB_ECO5E RecName: Full=ATP-dependent RNA helicase rhlB
 gi|187768819|gb|EDU32663.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014285|gb|EDU52407.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4113]
 gi|189001565|gb|EDU70551.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189359231|gb|EDU77650.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362707|gb|EDU81126.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189373308|gb|EDU91724.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC869]
 gi|189376769|gb|EDU95185.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC508]
 gi|208728906|gb|EDZ78507.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733903|gb|EDZ82590.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739180|gb|EDZ86862.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158906|gb|ACI36339.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4115]
 gi|209753518|gb|ACI75066.1| thioredoxin 1 [Escherichia coli]
 gi|209753520|gb|ACI75067.1| thioredoxin 1 [Escherichia coli]
 gi|209753522|gb|ACI75068.1| thioredoxin 1 [Escherichia coli]
 gi|209753524|gb|ACI75069.1| thioredoxin 1 [Escherichia coli]
 gi|209753526|gb|ACI75070.1| thioredoxin 1 [Escherichia coli]
 gi|254595178|gb|ACT74539.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. TW14359]
 gi|290765068|gb|ADD59029.1| ATP-dependent RNA helicase RhlB [Escherichia coli O55:H7 str.
           CB9615]
 gi|320191126|gb|EFW65776.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC1212]
 gi|320639264|gb|EFX08886.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           G5101]
 gi|320644649|gb|EFX13699.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H- str.
           493-89]
 gi|320649974|gb|EFX18477.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H- str. H
           2687]
 gi|320655320|gb|EFX23262.1| ATP-dependent RNA helicase RhlB [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320660945|gb|EFX28388.1| ATP-dependent RNA helicase RhlB [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666069|gb|EFX33083.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326344238|gb|EGD67998.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           1125]
          Length = 421

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHC 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + IEV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|145611832|ref|XP_001411591.1| hypothetical protein MGG_11672 [Magnaporthe oryzae 70-15]
 gi|152060562|sp|A4RGD1|RRP3_MAGO7 RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|145019073|gb|EDK03352.1| hypothetical protein MGG_11672 [Magnaporthe oryzae 70-15]
          Length = 538

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 152/429 (35%), Positives = 241/429 (56%), Gaps = 22/429 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DLG+   +  A     + KPTPIQ + IPL LQ  DV GIA+TG+GKTA+F LP+L +
Sbjct: 112 FRDLGIVEPLCEACEALKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQS 171

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEK +        L+L PTRELAAQ+   FE  G + +L  A+++GG+   +Q+  L +
Sbjct: 172 LLEKPQPLF----GLVLAPTRELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSTALGK 227

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+LDH  + K   + +++ LV+DEADR+LD+ F P +  I   +P  R+T
Sbjct: 228 KPHIVVATPGRLLDHLEKTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILKFLPRERRT 287

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L++P ++ V+  SS  +T+            K   +    L 
Sbjct: 288 FLFSATMSSKVESLQRASLRDPLKVSVS--SSQEKTVSTLIQNPLFIPHKHKDVYLIYLA 345

Query: 241 SQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++   K  I+F    N+ + V  L  +L    F    +HG + Q  R+  L+ FK  +  
Sbjct: 346 NEFAGKTTIVFTRTVNEAQRVSILLRTL---SFGAIPLHGQLSQSMRLGALNKFKARSRD 402

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIP+V  V NFD+P  +  YIHR+GRT RAGR G+A +++ + D++  
Sbjct: 403 ILVATDVAARGLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLELW 462

Query: 358 DAIEK--LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG-----FDRRK 410
             IEK  L  +K+     D   +    E+++ AQ  HAR+      +  G        RK
Sbjct: 463 LRIEKAALNGRKLPLFQPDKEEVMVFKERVEEAQR-HAREEMKALHEDRGKKGAVLKGRK 521

Query: 411 KNYSSQKSH 419
           +  ++++ H
Sbjct: 522 RGSATKRRH 530


>gi|119582644|gb|EAW62240.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_c [Homo
           sapiens]
          Length = 1032

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232
           V   RQT++FSAT    ++ ++   L  P  ++V   S     +E    V    +   K 
Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L    Q   ++   IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK
Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++
Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             ++   I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   
Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779

Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439
           +   +  +   E +K+ K    +Q++D
Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805


>gi|117617930|ref|YP_855071.1| ATP-independent RNA helicase DbpA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559337|gb|ABK36285.1| ATP-independent RNA helicase DbpA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 458

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 151/450 (33%), Positives = 241/450 (53%), Gaps = 27/450 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ L LSP +   +   GY++ TPIQ +++PLVL   D+   A+TG+GKTA+F L +L 
Sbjct: 4   EFSSLNLSPALQDNLASLGYLQMTPIQAQSLPLVLDGKDLIAKAKTGSGKTAAFGLGLLA 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+  R  V+    L+L PTRELA QVA    +  +   N+ +  L GG P   Q+  L 
Sbjct: 64  NLDVNRLEVQ---ALVLCPTRELADQVATEIRRLARTLPNVKLVTLCGGTPTAPQSATLS 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA + + TPGRIL H  +G L ++ ++ LV+DEADRMLDMGF   I  + S  P  RQT
Sbjct: 121 FGAHIAVGTPGRILKHLEQGTLELDGLKTLVLDEADRMLDMGFGEDINRVISHAPRDRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + + ++S    +NP  + V +    +   +  +     Q       L    Q
Sbjct: 181 LLFSATYPEGIAQMSRGVQRNPVEVSVESLHEDSAIEQKLYEVPAGQRLDALGWLLSHYQ 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++FCN K+   ++   L  +GFS  A++G+++QR R ++L  F  G+  ++V
Sbjct: 241 PSSC----VVFCNTKRACNDVADHLAAKGFSALALNGDLEQRERDQVLVRFANGSATILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++G V N+++    E ++HRIGRTGRAG+ G A +L    + + ++ I
Sbjct: 297 ATDVAARGLDIKELGAVINYELTYDPEVHVHRIGRTGRAGQQGLALSLYQPNEAQRVNFI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE---------KIDIAQHNHARKNNPIPQKS-----TGF 406
           E+  +  +    GDL+ +   ++          ID  + +  R  + +   +      G 
Sbjct: 357 EEYQQAPIP--QGDLAGIGRDIKPIAPQMVTLSIDAGRKSKVRAGDILGALTGEGGIAGA 414

Query: 407 DRRKKNYSSQKSHIPLKE---SEKISKLQQ 433
           D  K   S Q S++ +K    S  + +LQ+
Sbjct: 415 DVGKIQISEQYSYVAVKRQVASAALKRLQE 444


>gi|53713588|ref|YP_099580.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46]
 gi|60681868|ref|YP_212012.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|253565577|ref|ZP_04843032.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5]
 gi|265763909|ref|ZP_06092477.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16]
 gi|52216453|dbj|BAD49046.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46]
 gi|60493302|emb|CAH08086.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|251945856|gb|EES86263.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5]
 gi|263256517|gb|EEZ27863.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16]
 gi|301163360|emb|CBW22910.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 638R]
          Length = 418

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 135/371 (36%), Positives = 218/371 (58%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ + IP++L+  D+  +AQTGTGKTA+F+LP+L
Sbjct: 1   MKFSELQLNDNVLEALDAMRFEECTPIQEQAIPVILEGRDLIAVAQTGTGKTAAFLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             L +G         +I+ PTRELA Q+    E +     ++   + GG   I FE Q K
Sbjct: 61  NKLSEGGHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLMLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYEDIMQIVKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++   L NP  +++    + ++  E    A Y  Y  +   + +
Sbjct: 181 RQTIMFSATMPAKIQQLANTILNNPAEVKL----AVSKPAEKIVQAAYVCYENQKLGIVR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L +++  +  IIF + K  V  +  +L+    +V  +H +++Q  R  I+  FK G I 
Sbjct: 237 SLFAEEVPERVIIFASSKIKVKEVAKALKMMKLNVGEMHSDLEQVQREFIMHEFKSGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ +RG+DI D+  V NFDVP+ +E+Y+HRIGRT RA   G A T V +++  + 
Sbjct: 297 ILVATDIVSRGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNF 356

Query: 358 DAIEKLIEKKV 368
             IE  +EK++
Sbjct: 357 KNIENFLEKEI 367


>gi|327329925|gb|EGE71679.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL097PA1]
          Length = 564

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 152/436 (34%), Positives = 238/436 (54%), Gaps = 33/436 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L  
Sbjct: 55  FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 114

Query: 63  L----EKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    ++G   +     P+ L++ PTRELA QV+ +           V  + GG+ +E+Q
Sbjct: 115 ITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGARVLTVYGGVGYESQ 174

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G DV++ TPGR+LD   R  L ++++ I+V+DEAD MLD+GF+P ++N+    P
Sbjct: 175 IDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTP 234

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYAQYSKKC 232
            +RQT+LFSATM   +  ++ + L+ P  +     +T ++  +T +  +    A    K 
Sbjct: 235 ASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY---QAHPLDKI 291

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            ++ ++LQ+ D  K  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+
Sbjct: 292 EIIGRILQANDVEKV-IIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFR 350

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   
Sbjct: 351 HGEATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWA 410

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP---------IPQKS 403
           D+       KLI K    LN +LS    P+E    + H +   + P         + + +
Sbjct: 411 DVTRW----KLINKA---LNLELSE---PVETYSTSPHLYTDLDIPEDAQGQIVDLEKAA 460

Query: 404 TGFDRRKKNYSSQKSH 419
           T   RR+  +    SH
Sbjct: 461 TEKKRRQHRHGHDGSH 476


>gi|224370329|ref|YP_002604493.1| predicted ATP-dependent RNA helicase [Desulfobacterium
           autotrophicum HRM2]
 gi|223693046|gb|ACN16329.1| predicted ATP-dependent RNA helicase [Desulfobacterium
           autotrophicum HRM2]
          Length = 411

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 131/375 (34%), Positives = 221/375 (58%), Gaps = 6/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    +S  +   +   G+V+PT IQ K IP +L+  DV  IAQTGTGKTA+F +P++
Sbjct: 1   MKFEKYHISEDLKKNLAALGFVRPTDIQFKAIPSILKGEDVLAIAQTGTGKTAAFAIPVI 60

Query: 61  TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +   K   R R  R L++ PTRELA Q+   F+   ++  +    L GG+  + Q K+
Sbjct: 61  DRIHSYKTSKRTRGIRCLVMVPTRELAEQIGGVFDTLSRHTKVKTFALYGGVEQDRQIKR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+LI TPGR+ D  ++G + ++N+  LV+DEAD MLD+GFI  I ++   +    
Sbjct: 121 LQDGIDILIATPGRMFDLISQGHINLDNVNTLVLDEADHMLDLGFITDIHHVKQKLVKRH 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPK-RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL FSAT+  +++K++ + ++    RI+++     ++ + H FV  + +   K   L+ 
Sbjct: 181 QTLFFSATINQKIKKLAFSQVKTTAIRIQISPDDPVSKNVSH-FVM-FVEMDDKRFFLEN 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            ++   + K  I+F   +     +  ++E+ G     IHG  DQ  R  ++  FK   I 
Sbjct: 239 FIKENPSAKI-IVFVRTRVRAERVAKAMERVGIETSTIHGEKDQTLRSLVMQRFKNNEIS 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D++ARG+DIP+V  V N+D+P++AENY+HR+GRTGR  + G A +  ++ + + +
Sbjct: 298 ILIATDVSARGIDIPNVDFVINYDLPDQAENYVHRVGRTGRGVKKGSAISYCSRNERERL 357

Query: 358 DAIEKLIEKKVDWLN 372
           D I+  I KKV+ ++
Sbjct: 358 DEIQTFINKKVEVVH 372


>gi|312883442|ref|ZP_07743168.1| ATP-dependent RNA helicase DbpA [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369058|gb|EFP96584.1| ATP-dependent RNA helicase DbpA [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 458

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 211/364 (57%), Gaps = 7/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L+  ++  +   G+ + T IQ + +P +L+  DV G  +TG+GKT +F L +L  
Sbjct: 5   FNTLNLASDLLVTLDSLGFSQMTAIQQQALPAILEGKDVIGQGKTGSGKTVTFSLGILNN 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R R++   TL+L PTRELA QVA       +  +N+ V  L GG+P   Q   LE 
Sbjct: 65  LNVERFRIQ---TLVLCPTRELADQVAKEIRTLARGRHNVKVLTLCGGMPMGPQIGSLEH 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRILDH ++G++  ++I   V+DEADRMLDMGF   I  + S +P  RQTL
Sbjct: 122 GAHIIVGTPGRILDHMSKGRIQFSDINTFVLDEADRMLDMGFEDAIDTLVSELPINRQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++ ++E      + I+  T      TI+  F       +K  AL   LL  
Sbjct: 182 LFSATYPKHIEVLAEKVTSEAQMIKTQTHDEKT-TIKQFFYEVDGTEAKDDALETLLLHY 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   ++ ++FCN KK V ++   L++ GF+V  +HG+++QR R + L  F   +  ++VA
Sbjct: 241 KP--ESSVVFCNTKKEVQDVSDELDRLGFNVAELHGDMEQRERERALITFANKSTSILVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+     +   +  IE
Sbjct: 299 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGAEGLAFSFFTARESYRVARIE 358

Query: 362 KLIE 365
           + ++
Sbjct: 359 EYMD 362


>gi|292493687|ref|YP_003529126.1| DEAD/DEAH box helicase [Nitrosococcus halophilus Nc4]
 gi|291582282|gb|ADE16739.1| DEAD/DEAH box helicase domain protein [Nitrosococcus halophilus
           Nc4]
          Length = 423

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 146/424 (34%), Positives = 236/424 (55%), Gaps = 13/424 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L L+  ++  + DAG+   TPIQ  T+PL+L   DV G AQTGTGKTA+F+L  +
Sbjct: 9   ISFDALNLAKPLIQGIQDAGFTVCTPIQALTLPLLLAGKDVAGQAQTGTGKTAAFLLATM 68

Query: 61  TILEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +  G  + + PR LIL PTRELA Q+  + +  G++  L   ++ GG  +  Q   
Sbjct: 69  QYLLRDLGIEQGQQPRALILAPTRELAIQIKKDAQLLGRHTGLRSVVVYGGANYRKQRHL 128

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176
           LE+G D+LI TPGR++D++ +       ++++V+DEADRM D+GFI  I+ I   +P   
Sbjct: 129 LEQGCDILIGTPGRLIDYYKQQIFDFKKVQVVVLDEADRMFDLGFIRDIRYILRRLPPPH 188

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R  +LFSAT++  + +++   + NP+ ++  +   TA+ I+      Y   +++   L 
Sbjct: 189 KRLGMLFSATLSLRVTELAYEHMNNPRLVQTESQKVTADKIKE---RVYFPANEEKIPLL 245

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L  +   ++ I+F N K     +   LE  GF    + G++ Q  R ++L  F+EG+ 
Sbjct: 246 LALLKRLAPQHAIVFVNTKYAAEQVWGYLEGNGFKAALLSGDVPQGKRQRLLKEFQEGSY 305

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL IP V HVFN+D+P   E+Y+HRIGRT RAG  G A +   ++    
Sbjct: 306 PILVATDVAARGLHIPTVTHVFNYDLPQDPEDYVHRIGRTARAGASGSAVSFACEDYAFS 365

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  IE+ I  K+   + D  +L+ P + I +      R N  +  +  G   R+K   S+
Sbjct: 366 LPDIEEYIGHKLAPFSVDDEALSIPKQPISLP----PRDNRNL--RKGGHRSRQKKKDSR 419

Query: 417 KSHI 420
           K  +
Sbjct: 420 KGGV 423


>gi|115770281|ref|XP_783077.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
           [Strongylocentrotus purpuratus]
          Length = 660

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 132/363 (36%), Positives = 211/363 (58%), Gaps = 1/363 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F ++ LS  ++ A+    + +PTPIQ  TIP+ L   D+C  A TGTGKTA+F+LP++
Sbjct: 79  MAFTEMNLSRPILRAISGLNFTEPTPIQSATIPVALLGKDICACAATGTGKTAAFMLPVV 138

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L++ PTREL  Q+ +   +  +  N+   L +GG+  + Q   L 
Sbjct: 139 ERLLYKPKQAPVTRVLVVTPTRELGVQIFNVSRQLCEFTNIECCLAVGGLDIKLQEAALR 198

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G D++I TPGR++DH  N     ++++E+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 199 KGPDIVIATPGRLIDHLHNAPTFSLSSVEVLILDEADRMLDEFFEEQMKEIIKMCSVARQ 258

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTD+++ ++   L+NP RI VN  +  A  ++  F+            +   L
Sbjct: 259 TMLFSATMTDQVKDLALVSLKNPVRIFVNENTDVAYNLQQEFIRIRDNREGDREAIVSAL 318

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++   + ++F   KK    L   L   G  V  +HG++ Q  RM++L  FKE  I ++
Sbjct: 319 CCRNFHDHCMVFVQTKKQAHRLHVILGLLGIKVGELHGDLSQTKRMEMLRMFKEDLIDIL 378

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +L  +++ + +  
Sbjct: 379 VATDLAARGLDIEGVKTVINFTMPNSEKHYVHRVGRTARAGRSGRSVSLAGEKERRMLKE 438

Query: 360 IEK 362
           + K
Sbjct: 439 LVK 441


>gi|206578204|ref|YP_002241152.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae 342]
 gi|288937791|ref|YP_003441850.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
 gi|290513187|ref|ZP_06552549.1| ATP-dependent RNA helicase RhlB [Klebsiella sp. 1_1_55]
 gi|226739540|sp|B5XYY9|RHLB_KLEP3 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|206567262|gb|ACI09038.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae 342]
 gi|288892500|gb|ADC60818.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
 gi|289774398|gb|EFD82404.1| ATP-dependent RNA helicase RhlB [Klebsiella sp. 1_1_55]
          Length = 421

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 143/373 (38%), Positives = 212/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P V+ A+   G+   TPIQ   +PL L+  DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPAVIEALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAT 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q LL+ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLLE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGNSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|161505568|ref|YP_001572680.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189040035|sp|A9MJ29|RHLB_SALAR RecName: Full=ATP-dependent RNA helicase rhlB
 gi|160866915|gb|ABX23538.1| hypothetical protein SARI_03738 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 421

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 143/373 (38%), Positives = 212/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P+VV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQVTGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAA 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIESYIGHSI 379


>gi|15422163|gb|AAK95821.1| RNA helicase-like protein [Homo sapiens]
          Length = 796

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 138/363 (38%), Positives = 208/363 (57%), Gaps = 1/363 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 218 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 277

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 278 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 397

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 398 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 457

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 458 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 517

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 518 VATDVAARGLDIEGVKTVINFTMPNTIKHYDHRVGRTARAGRAGRSVSLVGEDERKMLKE 577

Query: 360 IEK 362
           I K
Sbjct: 578 IVK 580


>gi|291615697|ref|YP_003518439.1| RhlB [Pantoea ananatis LMG 20103]
 gi|291150727|gb|ADD75311.1| RhlB [Pantoea ananatis LMG 20103]
 gi|327395962|dbj|BAK13384.1| ATP-dependent RNA helicase RhlB [Pantoea ananatis AJ13355]
          Length = 430

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 148/391 (37%), Positives = 222/391 (56%), Gaps = 17/391 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P VV A+   G+   TPIQ   +P  L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPLVVEALDKKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHH 70

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L      +GR +V  PR LIL PTRELA Q+  + E    +  L + L  GG  ++ Q K
Sbjct: 71  LLSHPAPEGR-QVNQPRALILAPTRELAVQIHADAEPLAASTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+L+ T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLENGVDILVGTTGRLIDYAKQNHVNLGAIQVMVLDEADRMFDLGFIKDIRWLFRRMPAA 189

Query: 178 RQ--TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234
            Q  ++LFSAT++  +++++   + + + +EV     T   I E  F   Y    +K  L
Sbjct: 190 TQRLSMLFSATLSYRVRELAFEHMNSAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRL 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G
Sbjct: 247 LQTLVE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E  
Sbjct: 306 DIDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGASGHSISLACEEYA 365

Query: 355 KHIDAIEKLIEKK--VDWLNGD--LSSLNPP 381
            ++  IE+ I     V   N D  L+ L PP
Sbjct: 366 LNLPGIEEYIGHSIPVSKYNSDALLTELPPP 396


>gi|262273976|ref|ZP_06051788.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
 gi|262221786|gb|EEY73099.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
          Length = 441

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 141/422 (33%), Positives = 233/422 (55%), Gaps = 11/422 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +   G+  PT +Q   IP+V    D+   ++TG+GKT +F+LP L
Sbjct: 1   MQFEDLGLDKRLLKTMELWGFDTPTDVQASAIPVVCAGKDLLASSKTGSGKTLAFLLPAL 60

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + + +A  R  PR ++L PTREL  QV     K          L++GG  F  Q K+ 
Sbjct: 61  QRVMRSKAFSRSGPRVVVLAPTRELVKQVYGELRKLLAGTQFKGMLILGGENFNDQAKEF 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            +    ++ TPGR+ DH     L +  +E+L++DEADRMLD+GF P ++ I S     R 
Sbjct: 121 RKNPAFIVATPGRLADHLEHRHLSLEGLELLILDEADRMLDLGFAPQLKAINSAANHRRR 180

Query: 179 QTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+   ++ +++ + L++PKR+ +   +   + IE  F         K ALL +
Sbjct: 181 QTLMFSATLDHQQVNEIAADMLKDPKRVAIGFVNEEHKDIEQRFFLC-DHLDHKQALLDR 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++ Q++ +  +IF   + +   L     ++G    A+ G++ Q +R +I++ F+ G  +
Sbjct: 240 VME-QESYQQVMIFTATRADTDRLATWFVERGIKAVALSGDLSQSARNRIMNEFERGLHK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLDI +V HV NFD+P  AE Y+HRIGRTGRAG  G A + V  +D    
Sbjct: 299 VLVTTDVASRGLDISNVSHVVNFDMPKHAEEYVHRIGRTGRAGNKGIAISFVGPKDWNSF 358

Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNPPLEKIDIAQHNHARKNN-PIPQKSTGFDRRKK 411
             IE  ++K++ +     L G    L P  +K    +  H +K + P  +K+    +R K
Sbjct: 359 KNIEGFLDKRMSFQTLEGLEGKFKGLAPKKKKTFSKKPQHKKKGDKPTQKKAAVPKKRNK 418

Query: 412 NY 413
           ++
Sbjct: 419 SF 420


>gi|153835973|ref|ZP_01988640.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810]
 gi|308094943|ref|ZP_05892523.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus AN-5034]
 gi|308095142|ref|ZP_05903781.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus Peru-466]
 gi|308125529|ref|ZP_05775749.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus K5030]
 gi|149750727|gb|EDM61472.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810]
 gi|308085569|gb|EFO35264.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus Peru-466]
 gi|308092338|gb|EFO42033.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus AN-5034]
 gi|308112170|gb|EFO49710.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus K5030]
          Length = 444

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 141/389 (36%), Positives = 210/389 (53%), Gaps = 10/389 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + KPT IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKDLGLDNRLLKNLKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L+      + PR +IL PTRELA QV           +   AL++GG  F  Q K L
Sbjct: 61  HKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYDAALILGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGR+ DH     L ++ +E L++DEADRMLD+GF P ++ I +     R 
Sbjct: 121 RRYPKFIVATPGRLADHLEHRSLYLDGLETLILDEADRMLDLGFAPELRRIHNAAKHRRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+   E+  ++   L  PKRI V   +   + I   F         K A+L++
Sbjct: 181 QTLMFSATLDHAEVNDIASEMLNAPKRIAVGVSNEEHKDITQKFYLC-DHLDHKEAILER 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L S+   +  IIF   + +   L   L ++     A+ GN++Q  R  I+S F+    +
Sbjct: 240 VL-SEAEYRQVIIFTATRDDTERLTAKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLDI  V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D    
Sbjct: 299 ILVTTDVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSF 358

Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNPP 381
             IE  +++ + +     L G    L PP
Sbjct: 359 KRIETYLQQDLAFSVFEDLKGKFKGLKPP 387


>gi|89075877|ref|ZP_01162256.1| putative ATP-dependent RNA helicase DbpA [Photobacterium sp. SKA34]
 gi|89048406|gb|EAR53983.1| putative ATP-dependent RNA helicase DbpA [Photobacterium sp. SKA34]
          Length = 461

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 137/367 (37%), Positives = 218/367 (59%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P ++  +   GY   TPIQ +++PL+L+  DV    +TG+GKTA+F L +L  
Sbjct: 6   FSTLNLNPDLLSNLTSLGYDAMTPIQAQSLPLILEGKDVIAQGKTGSGKTAAFGLGLLQN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L+  R RV+   TL+L PTRELA QVA    +  +  +N+ V  L GG PF  Q   LE 
Sbjct: 66  LKVKRFRVQ---TLVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGTPFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ +H  +G L ++ +  LV+DEADRML+MGF   +  I  + P  RQTL
Sbjct: 123 GAHIIVGTPGRVEEHVRKGFLCLDELNTLVLDEADRMLEMGFQDSLDAIIDVAPSDRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   ++  +++  ++NP  ++V +    +   +H F    +   +  A+  +LL S
Sbjct: 183 LFSATYPTQIASIAKRIMRNPVEVKVESNHDNSSISQH-FYKVESNDDRLRAV--RLLLS 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ +IFCN K+    +   LE  GFS  A+HG+++QR R + L  F   +  ++VA
Sbjct: 240 QHRPESCVIFCNTKREAQEISDDLEDYGFSSIALHGDLEQRERDRTLVLFANKSRSILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++  V N+ +    E ++HRIGRTGRAG  G A +L + ++   +  +E
Sbjct: 300 TDVAARGLDIDNLDAVINYHLARDTEVHVHRIGRTGRAGSKGIACSLFSDKEHYKVALLE 359

Query: 362 KLIEKKV 368
             +++ +
Sbjct: 360 DYLDRPI 366


>gi|313812629|gb|EFS50343.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
          Length = 560

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 146/398 (36%), Positives = 225/398 (56%), Gaps = 24/398 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L  
Sbjct: 51  FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 110

Query: 63  L----EKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    ++G   +     P+ L++ PTRELA QV+ +           V  + GG+ +E+Q
Sbjct: 111 ITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQ 170

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G DV++ TPGR+LD   R  L ++++ I+V+DEAD MLD+GF+P ++N+    P
Sbjct: 171 IDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTP 230

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYAQYSKKC 232
            +RQT+LFSATM   +  ++ + L+ P  +     +T ++  +T +  +    A    K 
Sbjct: 231 ASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY---QAHPLDKI 287

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            ++ ++LQ+ D  K  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+
Sbjct: 288 EIIGRILQANDVEKV-IIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFR 346

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   
Sbjct: 347 HGEATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWA 406

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           D+       KLI K    LN +LS    P+E    + H
Sbjct: 407 DVTRW----KLINKA---LNLELSE---PVETYSTSPH 434


>gi|91206537|sp|Q4X195|DBP2_ASPFU RecName: Full=ATP-dependent RNA helicase dbp2
          Length = 547

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 136/374 (36%), Positives = 209/374 (55%), Gaps = 12/374 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F + G    V+  V   G+ +PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 122 NFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 181

Query: 62  ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                 +L  G      P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q
Sbjct: 182 HINAQPLLAPGDG----PIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQ 237

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S + 
Sbjct: 238 IRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIR 297

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT ++SAT   E+++++ +FL +  ++ + +   +A       V   + + K+  ++
Sbjct: 298 PDRQTCMWSATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMI 357

Query: 236 QQLLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + L +  +   N  +IF   K+    +   L + G+   +IHG+  Q+ R  +L+ FK G
Sbjct: 358 KHLEKIMENRSNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTG 417

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +MVA+D+A+RG+D+ D+ HV N+D PN +E+YIHRIGRTGRAG  G A T    E+ 
Sbjct: 418 KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENS 477

Query: 355 KHI-DAIEKLIEKK 367
           K   D +  L E K
Sbjct: 478 KQARDLVTILTEAK 491


>gi|281212472|gb|EFA86632.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 728

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 148/397 (37%), Positives = 225/397 (56%), Gaps = 22/397 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F   G    ++ ++   GY  PT IQ + +P+ L   D+  IA+TG+GKTASF+ P +  
Sbjct: 255 FGHYGFDNLLIQSIQKQGYESPTSIQKQAVPIALSGRDLIAIAKTGSGKTASFIWPAIPH 314

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LEKG      P  L + PTRELA Q+    +K+ K Y +  +++ GG+    Q 
Sbjct: 315 IMDQPYLEKGDG----PIALFVAPTRELAHQIYLETQKFAKPYKIRTSVIYGGVTKLLQC 370

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++L+ G ++L+ TPGR++D        MN +  LV+DEADRM DMGF P +Q+I   +  
Sbjct: 371 RELKAGCEILVTTPGRLIDMIKLKATKMNRVTYLVLDEADRMFDMGFGPQVQSIVGQIRP 430

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALL 235
            RQTLLFSAT    +++++ N L +P RI + NT S+  +  ++  V   +   +K   L
Sbjct: 431 DRQTLLFSATFPPNIEELARNILIDPIRISIGNTGSANQDITQNVIV--LSSNGEKWNWL 488

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            Q L S  +  N IIF + K  V  L  +L K GF    +HG+ DQ+ R  I++ FK+G+
Sbjct: 489 IQRLPSLVSQGNVIIFVSTKVAVDELSMNLVKFGFPSEGLHGDKDQQERTMIINKFKDGS 548

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGLDI  + +V NFD     +++ HRIGRTGRAG  G A+TL+  +DI 
Sbjct: 549 VPILVATDVAARGLDINLIRNVVNFDPSRDIDSHTHRIGRTGRAGTQGIAYTLITPKDIH 608

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
               + K +E+         + + PP E I IA +N+
Sbjct: 609 FSAELVKHLEEA--------NQIVPP-ELISIAMNNN 636


>gi|289425167|ref|ZP_06426944.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
           SK187]
 gi|295130858|ref|YP_003581521.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
 gi|289154145|gb|EFD02833.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
           SK187]
 gi|291375854|gb|ADD99708.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
 gi|313792354|gb|EFS40453.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
 gi|313816221|gb|EFS53935.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
 gi|313832974|gb|EFS70688.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
 gi|314914858|gb|EFS78689.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
 gi|314962474|gb|EFT06574.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
 gi|314983655|gb|EFT27747.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
 gi|315077690|gb|EFT49741.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
 gi|315080851|gb|EFT52827.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
 gi|315109398|gb|EFT81374.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
 gi|327329827|gb|EGE71582.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL096PA2]
 gi|327452200|gb|EGE98854.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
          Length = 560

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 146/398 (36%), Positives = 225/398 (56%), Gaps = 24/398 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L  
Sbjct: 51  FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 110

Query: 63  L----EKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    ++G   +     P+ L++ PTRELA QV+ +           V  + GG+ +E+Q
Sbjct: 111 ITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQ 170

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G DV++ TPGR+LD   R  L ++++ I+V+DEAD MLD+GF+P ++N+    P
Sbjct: 171 IDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTP 230

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYAQYSKKC 232
            +RQT+LFSATM   +  ++ + L+ P  +     +T ++  +T +  +    A    K 
Sbjct: 231 ASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY---QAHPLDKI 287

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            ++ ++LQ+ D  K  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+
Sbjct: 288 EIIGRILQANDVEKV-IIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFR 346

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   
Sbjct: 347 HGEATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWA 406

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           D+       KLI K    LN +LS    P+E    + H
Sbjct: 407 DVTRW----KLINKA---LNLELSE---PVETYSTSPH 434


>gi|238787599|ref|ZP_04631397.1| DEAD/DEAH box helicase domain protein [Yersinia frederiksenii ATCC
           33641]
 gi|238724386|gb|EEQ16028.1| DEAD/DEAH box helicase domain protein [Yersinia frederiksenii ATCC
           33641]
          Length = 609

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 128/338 (37%), Positives = 208/338 (61%), Gaps = 9/338 (2%)

Query: 44  IAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLT 102
           +AQTG+GKTA+F LP+L  ++     ++ P+ L+L PTRELA QVA+    + K+   + 
Sbjct: 1   MAQTGSGKTAAFGLPLLHNID---PELKAPQVLVLAPTRELAIQVAEALTSFSKDIKGVN 57

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
           V  L GG  ++ Q + L +G  V++ TPGR+LDH  RG L ++N++ LV+DEAD ML MG
Sbjct: 58  VVALYGGQRYDVQLRALRQGPQVVVGTPGRLLDHLKRGTLNLSNLKGLVLDEADEMLRMG 117

Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           FI  ++NI + +P   QT LFSATM + +++++  F++ P+ + + +  +T   I   + 
Sbjct: 118 FIEDVENILAQIPAEHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQVYW 177

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                Y K  AL+ + L+++D     IIF   K   + +  +LE+ G+S  A++G+++Q 
Sbjct: 178 KVGGGYRKNEALV-RFLEAED-FDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQA 235

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L   K+G + +++A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR 
Sbjct: 236 LREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 295

Query: 343 GKAFTLVAKEDIKHIDAIE---KLIEKKVDWLNGDLSS 377
           G+A   V   + + +  IE   KL   +V+  N  L S
Sbjct: 296 GRALLFVENRERRLLQNIERTMKLTIPEVELPNAQLLS 333


>gi|120556818|gb|ABM26902.1| SrmB [Serratia marcescens]
          Length = 439

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 142/355 (40%), Positives = 211/355 (59%), Gaps = 8/355 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP+L  
Sbjct: 6   FSELELDDRLIDALRDKGYDRPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPVLQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVAD   +   + +L +A + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DV++ T GR+L +          +E L++DEADRMLDMGF   I+ I++   +  QTL
Sbjct: 126 NQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRNQTL 185

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQL 238
           LFSAT+  E +++ +E  L+ P  +E + PS     + ++  + A   Q+  K ALL  L
Sbjct: 186 LFSATLEGEAIREFAERILKEPVEVEAD-PSRRERKKILQWYYRADDVQH--KTALLIHL 242

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+  D  K+ +IF  +++ V  L   L + G + C + G + Q  R + +    +G + +
Sbjct: 243 LKQPDVQKS-VIFVRKRERVHELATWLREAGINTCYLEGEMVQAKRNEAVKRMMDGRVNV 301

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +VA+D+AARGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D
Sbjct: 302 LVATDVAARGLDILDITHVFNFDMPRTADTYLHRIGRTGRAGRKGTAISLVEAHD 356


>gi|85082449|ref|XP_956915.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A]
 gi|74662479|sp|Q7RY59|RRP3_NEUCR RecName: Full=ATP-dependent rRNA helicase rrp-3
 gi|28917996|gb|EAA27679.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A]
          Length = 515

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 143/387 (36%), Positives = 223/387 (57%), Gaps = 17/387 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+   +  A    GY  PTPIQ ++IPL LQ  D+ GIA+TG+GKTA+F LP+L  
Sbjct: 92  FKDLGIVDALCEACERLGYKNPTPIQEQSIPLALQNRDIIGIAETGSGKTAAFALPILQA 151

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L    A +     L+L PTRELAAQ+A  FE  G   +L  AL++GG+    Q   L + 
Sbjct: 152 LLDKPAPLF---ALVLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMVTQAIALGKK 208

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             V++ TPGR+LDH  + K   + +++ LV+DEADR+LDM F P ++ I   +P  R+T 
Sbjct: 209 PHVIVATPGRLLDHLEKTKGFSLRSMQYLVMDEADRLLDMDFGPILEKILKFLPRERRTF 268

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSATM+ +++ +    L++P ++ V++   +T  T++  +V  +  +  K   L  L  
Sbjct: 269 LFSATMSSKVESLQRASLRDPLKVSVSSNKYATVSTLKSNYV--FIPHMHKDTYLVYLC- 325

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   +  IIF         +   L   G     +HG + Q +R+  L+ F+ G+ +++V
Sbjct: 326 NEFAGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSREILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP+V  V N D+P  ++ Y+HR+GRT RAG+ G A ++V + D++    I
Sbjct: 386 ATDVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYDLEIWLRI 445

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDI 387
           E  +  K+D           PLEK ++
Sbjct: 446 EAALGHKLDEY---------PLEKDEV 463


>gi|325192175|emb|CCA26630.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 627

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 213/363 (58%), Gaps = 15/363 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L P+V   +    Y+KPTP+Q  +IP+ L   D+   AQTG+GKT  F+ P L  
Sbjct: 152 FTEVELGPEVCRNLELCKYMKPTPVQKYSIPIGLAGRDMMACAQTGSGKTGGFLFPTLAA 211

Query: 63  LEKGRA----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
           + +  A          R   P  LIL PTRELA+Q+ D  +K+     +   +L GG   
Sbjct: 212 MLREGAKPVDGAGSSQRKSHPAALILAPTRELASQIYDEAKKFCYCTGVAPVVLYGGAEV 271

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q ++LERG D+L+ TPGR++D   RG++ ++ I  L++DEADRMLDMGF P I+ +  
Sbjct: 272 GRQVRELERGCDLLVATPGRLVDLMERGRVSLSGIRFLILDEADRMLDMGFEPQIRRLVE 331

Query: 173 L--VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
              +P  RQT +FSAT   E+Q+++ +FLQ+   + V    S ++ ++   +     + K
Sbjct: 332 QEDMPRERQTFMFSATFPREMQRLAADFLQDYIFLTVGRVGSASKDVKQQ-IEFIEPHDK 390

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++ L Q Q+ +   ++F   K+    L   L ++GF   +IHG+  QR R   L++
Sbjct: 391 EDYLVRFLNQVQEGLI--LVFVETKRGADYLEQLLCREGFPATSIHGDRTQREREAALNS 448

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+D+AARGLDI  V HV NFD+PN  ++Y+HRIGRTGRAG  G A +++ 
Sbjct: 449 FRSGRTPVLVATDVAARGLDINGVTHVINFDLPNNIDDYVHRIGRTGRAGNLGHALSMMT 508

Query: 351 KED 353
            ++
Sbjct: 509 DKN 511


>gi|188532351|ref|YP_001906148.1| ATP-dependent RNA helicase RhlB [Erwinia tasmaniensis Et1/99]
 gi|226739538|sp|B2VG58|RHLB_ERWT9 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|188027393|emb|CAO95240.1| ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99]
          Length = 430

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 149/391 (38%), Positives = 223/391 (57%), Gaps = 17/391 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P+V+ A+   G+   TPIQ   +P  L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHH 70

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L      +GR +   PR LIL PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 71  LLSHPAPEGR-QTNQPRALILAPTRELAVQIHADAEPLAQITGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G DVLI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLENGVDVLIGTTGRLIDYAKQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAA 189

Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234
            Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  L
Sbjct: 190 NQRLNMLFSATLSFRVRELAFENMNNAEYVEVEPDQKTGHRIKEELF---YPSNEEKMRL 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G
Sbjct: 247 LQTLIE-EEWPDRTIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG +G + +L  +E  
Sbjct: 306 DVDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSISLACEEYA 365

Query: 355 KHIDAIEKLIEKK--VDWLNGD--LSSLNPP 381
            ++ AIE+ I     V   N D  ++ L PP
Sbjct: 366 LNLPAIEEYIGHSITVSRYNSDALMTDLPPP 396


>gi|324517616|gb|ADY46875.1| Eukaryotic initiation factor 4A-III [Ascaris suum]
          Length = 405

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 214/379 (56%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+GL  +++  +   G+ KP+ IQ + I  +++  DV   AQ+GTGKTA+F    +++
Sbjct: 34  FDDMGLREELIRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQAQSGTGKTATF---SISV 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     +R  + LIL PTRELA+Q+       G   N+     IGG       +KL+ G
Sbjct: 91  LQGLNTTIRETQALILSPTRELASQIQKVILALGDYMNVQCHACIGGTNVGEDIRKLDYG 150

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I +LV+DEAD ML+ GF   + +I   +P   Q +L
Sbjct: 151 QHVVSGTPGRVFDMIRRRNLRTRSIRMLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVL 210

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT---YAQYSKKCALLQQLL 239
            SAT+  E+ +++  F+ NP RI V     T E I+  FVA      ++   C L   L 
Sbjct: 211 LSATLPHEILEMTSKFMTNPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLCDLYDTL- 269

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   L++  F+V A+HG+++Q+ R  I+  F+ GT +L+
Sbjct: 270 ----TITQAVIFCNTRRKVDWLAEKLKEANFTVSAMHGDMEQKERDAIVKEFRSGTSRLL 325

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLDIP V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 326 ISTDVFARGLDIPQVSLVVNYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRD 385

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 386 IEQYYATQIDEMPMNVADL 404


>gi|301754307|ref|XP_002912967.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Ailuropoda melanoleuca]
          Length = 1031

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232
           V   RQT++FSAT    ++ ++   L  P  ++V   S     +E    V    +   K 
Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L    Q   ++   IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK
Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++
Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             ++   I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   
Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779

Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439
           +   +  +   E +K+ K    +Q++D
Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805


>gi|119895518|ref|XP_586902.3| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Bos taurus]
 gi|297477226|ref|XP_002689237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Bos taurus]
 gi|296485325|gb|DAA27440.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Bos taurus]
          Length = 1031

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232
           V   RQT++FSAT    ++ ++   L  P  ++V   S     +E    V    +   K 
Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L    Q   ++   IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK
Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++
Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             ++   I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   
Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779

Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439
           +   +  +   E +K+ K    +Q++D
Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805


>gi|73971268|ref|XP_531911.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Canis familiaris]
 gi|194219918|ref|XP_001918233.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX46
           (DEAD box protein 46) (PRP5 homolog) [Equus caballus]
          Length = 1031

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232
           V   RQT++FSAT    ++ ++   L  P  ++V   S     +E    V    +   K 
Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L    Q   ++   IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK
Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++
Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             ++   I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   
Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779

Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439
           +   +  +   E +K+ K    +Q++D
Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805


>gi|159036117|ref|YP_001535370.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           arenicola CNS-205]
 gi|157914952|gb|ABV96379.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
           CNS-205]
          Length = 548

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 133/363 (36%), Positives = 207/363 (57%), Gaps = 2/363 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA+LG   + V A+  AG  +   IQ   +P+ L+  D+ G A TGTGKT  F +P+L  
Sbjct: 27  FAELGARQETVDALAAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGVPLLEQ 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L         P+ L++ PTREL  QVA + +  G    + V  + GG+ +E Q + L  
Sbjct: 87  VLAPAEGGDGTPQALVVVPTRELGIQVAKDLQAAGSTRGVRVLPIYGGVAYEPQIEALRS 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G ++L+ TPGR+LD   +  L ++ +  LV+DEADRMLD+GF+  ++ I +++P  RQT+
Sbjct: 147 GVEILVGTPGRLLDLAKQKHLKLDRVRALVLDEADRMLDLGFLDDVERILAILPEDRQTM 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +  +S  FL+ P  I     + T  + +   +A       K  ++ ++LQ+
Sbjct: 207 LFSATMPDPIVALSRRFLRRPVTIHAGHTAETGPSPQTQQLAYRTHSLNKIEIVARILQA 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      +IF   K+    +   L+ +GF+V A+HG++ Q +R + L  F+ G I  +VA
Sbjct: 267 RGRGLT-MIFTRTKRAADRVAADLDFRGFAVAAVHGDLGQGARERALRAFRTGKIDTLVA 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+  V HV N+D P   + Y HRIGRTGRAG  G A T V  +D+     I+
Sbjct: 326 TDVAARGIDVSGVTHVLNYDCPEDQDTYTHRIGRTGRAGASGVAVTFVDWDDMPRWRIID 385

Query: 362 KLI 364
           K +
Sbjct: 386 KTL 388


>gi|110834781|ref|YP_693640.1| ATP-dependent RNA helicase RhlB [Alcanivorax borkumensis SK2]
 gi|110647892|emb|CAL17368.1| ATP-dependent RNA helicase RhlB [Alcanivorax borkumensis SK2]
          Length = 422

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 138/374 (36%), Positives = 214/374 (57%), Gaps = 10/374 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L   ++  + D+G+   TPIQ + +   L   D  G AQTGTGKTA+F++ ++  
Sbjct: 25  FHDFDLHLDLMHGIADSGFQYCTPIQAEVLEHTLAGADAIGRAQTGTGKTAAFLITVIND 84

Query: 63  LEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L K    V+     PR LI+ PTRELA Q+  +     K  +L V  ++GG+ F  Q ++
Sbjct: 85  LLKHPIDVQRFAGEPRALIVAPTRELAMQIEKDANILTKYTDLQVMSVVGGMNFNRQQER 144

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+ +  D+L+ TPGR+LD   R  L ++ +E LV+DEADRMLDMGFIP ++ I  + P +
Sbjct: 145 LQNKLIDILVATPGRLLDFAKRRDLWLDRVEFLVLDEADRMLDMGFIPDVKRIVGMTPKS 204

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT LFSAT  D++  +S  + Q+ + +E+     T +T+E     T      K  LL
Sbjct: 205 QYRQTQLFSATFNDDVMNLSRRWTQDAEIVEIEPTQVTTDTVEQKVYIT--NTDDKFKLL 262

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+   + M   I+F N++     +C  L+K+G  V  I G++ Q  R K L  F+ G 
Sbjct: 263 YNLITGMN-MDKVIVFANRRDITRRVCDRLQKRGLKVSLISGDVPQTQRSKTLERFRAGD 321

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q+++A+D+A RG+ I  V HV N+++P   E+Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 322 LQVLIATDVAGRGIHIDGVSHVVNYNLPEDPEDYVHRIGRTGRAGASGMSISFACEDDAF 381

Query: 356 HIDAIEKLIEKKVD 369
            +  +E  I  K++
Sbjct: 382 LLPELENAIGMKLE 395


>gi|110799701|ref|YP_695305.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens ATCC
           13124]
 gi|168209167|ref|ZP_02634792.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens B str.
           ATCC 3626]
 gi|110674348|gb|ABG83335.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens ATCC
           13124]
 gi|170712632|gb|EDT24814.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens B str.
           ATCC 3626]
          Length = 478

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 129/364 (35%), Positives = 220/364 (60%), Gaps = 6/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ A+ + GY  P+ +Q  +IP +L+  D+   +QTG+GKTASF +P  
Sbjct: 1   MKFNELNLSDDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + EK     +  + L+L PTRELA QV D     G+   +  A + G  PF  Q ++L+
Sbjct: 59  -VCEKINIEEKKVQCLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIRELK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+ DH  RG L ++ +  +VIDEAD+ML MGFI  I++I   +   + T
Sbjct: 118 QRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT + E++++ E +++NP  +EV +     + IE   +    + +K  AL + L  
Sbjct: 178 ALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEK-NKGKALWKCLYS 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ I+FCN +  V ++   L+ +G +   +HG+++Q+ R++++ NF++   +++V
Sbjct: 237 YHP--ESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ +  +  V N++VP   E+Y+HRIGRTGRAGR GKA T V   + K+++ +
Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 354

Query: 361 EKLI 364
           E+ I
Sbjct: 355 EEYI 358


>gi|227824325|ref|ZP_03989157.1| DEAD-box ATP-dependent RNA helicase ydbR [Acidaminococcus sp. D21]
 gi|226904824|gb|EEH90742.1| DEAD-box ATP-dependent RNA helicase ydbR [Acidaminococcus sp. D21]
          Length = 444

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 139/410 (33%), Positives = 222/410 (54%), Gaps = 20/410 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA   ++P +V  +   G   PTP+Q + IP +LQ  DV   AQTG GKT SFV+P+ T 
Sbjct: 35  FAQFAIAPSLVERLHQTGKDIPTPVQERAIPALLQGRDVICRAQTGVGKTLSFVVPLFTK 94

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + + +  V+    LIL PTRELA Q A   +K      + V  + GG  ++ + +KL   
Sbjct: 95  ITEVKTFVQ---ALILSPTRELAQQTAGEIKKLADGTPVRVLAVSGGKDYDEERRKLGNK 151

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+VL+ TPGR+LDH  +G   +  I  LV+DE D ML  GF   I+ + SL+P   QT++
Sbjct: 152 ANVLVGTPGRLLDHLRKGNTSLGGITYLVLDEVDEMLRQGFGEDIETLLSLMPQPHQTMM 211

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+ +E++K+ +   +NP+ I+++   +TA TI    +     + ++   LQ ++   
Sbjct: 212 CSATLDEEVRKLGKMITKNPRLIDIDPKEATASTIHQVCIKVSEDHKEEA--LQTIIDRC 269

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     ++FC  K+  + +   L  +GF+   +HG++ Q+ R + +  F++   Q++VAS
Sbjct: 270 NPFLM-LVFCKSKERAIEVYDWLYGKGFNADVLHGDMSQQKRRQAMERFRKAKTQILVAS 328

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  V  V NFD+P+  + Y+HRIGRTGRAG  G+A T    ++ +       
Sbjct: 329 DIAARGLDVEGVTQVVNFDIPHDPDWYVHRIGRTGRAGNEGEAITFYTADETR------- 381

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
                  WL      L   LE+ ++A     R   P+  K     +R K+
Sbjct: 382 -------WLTHLEDKLGITLERQNLAGEKVRRTVKPVRPKKKRLPKRGKS 424


>gi|224139932|ref|XP_002323346.1| predicted protein [Populus trichocarpa]
 gi|222867976|gb|EEF05107.1| predicted protein [Populus trichocarpa]
          Length = 611

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 147/381 (38%), Positives = 213/381 (55%), Gaps = 19/381 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD+ L   V   +    YVKPTP+Q   IP++L   D+   AQTG+GKTA+F  P++  
Sbjct: 157 FADIDLGEAVNQNIRRCKYVKPTPVQRNAIPILLAGRDLMACAQTGSGKTAAFCFPIIAG 216

Query: 63  LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           + + +        R   P  LIL PTREL++Q+ D  +K+     + V ++ GG P   Q
Sbjct: 217 IMREQYVQRPHGGRTMYPLALILSPTRELSSQIHDEAKKFSYQTGVKVVVVYGGAPINQQ 276

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++LERG D+L+ TPGR++D   R ++ +  I  L +DEADRMLDMGF P I+ I   + 
Sbjct: 277 LRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMD 336

Query: 176 FT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQT+LFSAT   E+Q+++ +FL N   + V    S+ + I       Y Q   K
Sbjct: 337 MPPCGMRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQR--VEYVQEIDK 394

Query: 232 CALLQQLLQSQ-DTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            + L  LL +Q +T  N      ++F   KK   +L H L   GF   +IHG+  Q+ R 
Sbjct: 395 RSHLMDLLHAQRETEVNSKHSLTLVFVETKKGADSLEHLLHVNGFPATSIHGDRTQQERE 454

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG  G A
Sbjct: 455 MALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNTGLA 514

Query: 346 FTLVAKEDIKHIDAIEKLIEK 366
                +  +     +  L+++
Sbjct: 515 TAFFNENSMSLARPLADLMQE 535


>gi|310764827|gb|ADP09777.1| ATP-dependent RNA helicase SrmB [Erwinia sp. Ejp617]
          Length = 442

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 134/353 (37%), Positives = 204/353 (57%), Gaps = 4/353 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ ++ + G+ +PT IQ + IP  L+  DV G A TGTGKTA+++LP L  
Sbjct: 6   FSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVAD   +  K+ +L +A + GG+ F    +    
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAFMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DV++ T GR+L +          +E L++DEADRMLDMGF   I+ I++   + +QTL
Sbjct: 126 NQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQTL 185

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  E +Q  +E  L  P  IE +      + I+  +         K ALL  LL+
Sbjct: 186 LFSATLEGEAIQDFAERILNEPVEIEADPARRERKKIQQWYYRA-DDIKHKTALLLHLLK 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   ++F  +++ V  +C  L + G +   + G + Q  R + +    +G + ++V
Sbjct: 245 -QPEVTRAVVFVRKRERVHEVCGWLREAGINNSYLEGELVQAKRNEAIKRVVDGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           A+D+AARG+DI DV HV NFD+P  ++ Y+HRIGRTGRAG+ G A +LV   D
Sbjct: 304 ATDIAARGIDIDDVSHVINFDMPVTSDTYLHRIGRTGRAGKKGIAISLVEAHD 356


>gi|307132128|ref|YP_003884144.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
 gi|306529657|gb|ADM99587.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
          Length = 450

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 138/350 (39%), Positives = 203/350 (58%), Gaps = 10/350 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTLIL 78
           G+ +PT IQ + IP  ++  DV G A TGTGKTA+++LP+L  +L+  R +   PR LIL
Sbjct: 23  GFSRPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQHLLDFPRKKSGPPRILIL 82

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QVAD       + +L +A + GG+ +    +      DV++ T GR+L +  
Sbjct: 83  TPTRELAMQVADQARAMAAHTHLDIATITGGVAYMNHAEVFSENQDVVVATTGRLLQYIK 142

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQKVSEN 197
                   +E L++DEADRMLDMGF   I++I     + +QT+LFSAT+  D +Q  +E 
Sbjct: 143 EENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIQDFAER 202

Query: 198 FLQNPKRIEVNTPSSTAE---TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
            L +P  IEV    S  E    ++  + A   Q+  K ALL  LL+  D  ++ I+F  +
Sbjct: 203 LLNDP--IEVEAEPSRRERKKILQWYYRADDVQH--KTALLSHLLKQPDVTRS-IVFVRK 257

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           ++ V  L   L   G   C + G + Q  R + +    EG ++++VA+D+AARGLDI DV
Sbjct: 258 RERVHELVDWLRSAGIESCYLEGEMVQAKRNEAIKRLSEGRVKVLVATDVAARGLDILDV 317

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
            HVFNFD+P  ++ Y+HRIGRTGRAGR G A +LV   D   ++ I + +
Sbjct: 318 SHVFNFDLPRTSDVYLHRIGRTGRAGRKGCAISLVEAHDYLLLEKIGRYL 367


>gi|293399873|ref|ZP_06644019.1| ATP-dependent RNA helicase DbpA [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306273|gb|EFE47516.1| ATP-dependent RNA helicase DbpA [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 477

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 132/355 (37%), Positives = 211/355 (59%), Gaps = 10/355 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   ++ A+    Y +  PIQ + IP +L+  DV   ++TG+GKTASF +P++
Sbjct: 1   MQFKEFALHTDILKALEKLHYEQVLPIQEQVIPEILKGRDVIVRSRTGSGKTASFAIPIV 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
              I E+     R P+ +IL PTRELA Q+ ++F+  G    +    + G  P++ Q + 
Sbjct: 61  QELIWEE-----REPQAIILTPTRELALQIKEDFDNIGAYRRIKTVAIFGKQPYKFQIQD 115

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++ A V++ TPGRILDH  R  L   +I  ++IDEAD ML+MGFI  +Q+I +  P  +
Sbjct: 116 LKQRAHVVVGTPGRILDHLERETLKTGHIRYVIIDEADEMLNMGFIESVQSIFNYFPGNK 175

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            T LFSATM   +Q+++E F++ PK I ++  ++    I H   A   +  +K + L+QL
Sbjct: 176 ITCLFSATMPQPIQELAEGFMKEPKLITLSEETTVNAAITH--YAYEVKEKQKLSFLKQL 233

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  ++   + IIF   ++ V  +C  L      V  +HG + Q  R+  + +FK+G I++
Sbjct: 234 L-CKEQPASCIIFARTQEGVKTICEELYALDMCVDKLHGGMLQEDRIGNIRDFKKGKIRI 292

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +VA+D+AARG+D+ D+ H+ N+D+PN+ E Y+HRIGRTGR    G A T + + D
Sbjct: 293 LVATDVAARGIDVQDISHIINYDMPNQKETYLHRIGRTGRQSASGVAITFINEYD 347


>gi|261188002|ref|XP_002620418.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis SLH14081]
 gi|239593429|gb|EEQ76010.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis SLH14081]
          Length = 548

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 211/374 (56%), Gaps = 13/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ KPT IQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 132 FDEAGFPQYVMSEVKAQGFAKPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 191

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 192 INAQPLLAPGDG----PIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQI 247

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 248 RDLTRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 307

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT ++SAT   ++++++++FL +  ++ + +   +A       V   +++ K+  + +
Sbjct: 308 DRQTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAK 367

Query: 237 QLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            L +  +  K+   +IF   K+   ++   L + G+   +IHG+  Q  R  +L+ FK G
Sbjct: 368 HLDRIMEENKSAKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTG 427

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A TL   ++ 
Sbjct: 428 KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNA 487

Query: 355 KHI-DAIEKLIEKK 367
           K   D +  L E K
Sbjct: 488 KQARDLVSILTESK 501


>gi|251787806|ref|YP_003002527.1| ATP-dependent RNA helicase RhlB [Dickeya zeae Ech1591]
 gi|247536427|gb|ACT05048.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
          Length = 428

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 214/373 (57%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F+D  L P+V+ A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPQVIEALEKKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT       +   PR LI+ PTRELA Q+  + E   K   L + L  GG  ++ Q K 
Sbjct: 71  LLTHPASSERQTNQPRALIMAPTRELAVQIHTDAEALAKATGLRLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + M  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LEDGVDILIGTTGRLIDYTKQNHVNMGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G 
Sbjct: 248 QTLIE-EEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTQGN 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGASGCSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE     ++
Sbjct: 367 NLPAIEDYTGHRI 379


>gi|119481045|ref|XP_001260551.1| RNA helicase (Dbp), putative [Neosartorya fischeri NRRL 181]
 gi|134034066|sp|A1DGZ7|DBP2_NEOFI RecName: Full=ATP-dependent RNA helicase dbp2
 gi|119408705|gb|EAW18654.1| RNA helicase (Dbp), putative [Neosartorya fischeri NRRL 181]
          Length = 545

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 136/374 (36%), Positives = 209/374 (55%), Gaps = 12/374 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F + G    V+  V   G+ +PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 120 NFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 179

Query: 62  ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                 +L  G      P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q
Sbjct: 180 HINAQPLLAPGDG----PIVLILAPTRELAVQIQTEISKFGKSSRIRNTCVYGGVPKGPQ 235

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S + 
Sbjct: 236 IRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIR 295

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT ++SAT   E+++++ +FL +  ++ + +   +A       V   + + K+  ++
Sbjct: 296 PDRQTCMWSATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMI 355

Query: 236 QQLLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + L +  +   N  +IF   K+    +   L + G+   +IHG+  Q+ R  +L+ FK G
Sbjct: 356 KHLEKIMENRGNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTG 415

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +MVA+D+A+RG+D+ D+ HV N+D PN +E+YIHRIGRTGRAG  G A T    E+ 
Sbjct: 416 KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENS 475

Query: 355 KHI-DAIEKLIEKK 367
           K   D +  L E K
Sbjct: 476 KQARDLVTILTEAK 489


>gi|145632266|ref|ZP_01788001.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655]
 gi|144987173|gb|EDJ93703.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655]
          Length = 415

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 141/368 (38%), Positives = 216/368 (58%), Gaps = 10/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDLSLHPIVRDALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTIAFLTATFHH 70

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   +        PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 71  LLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI--TSLVPFT 177
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +     VP +
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVISLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPVPQS 190

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           R T+LFSAT++ ++++++   + +P+ IE+     T   I E  F   Y     K ALL 
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHCIKEELF---YPSNQDKMALLL 247

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ +   +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G +
Sbjct: 248 TLMEDE-WPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDL 306

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   +
Sbjct: 307 DILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMN 366

Query: 357 IDAIEKLI 364
           + AIE+ I
Sbjct: 367 LPAIEEYI 374


>gi|168067875|ref|XP_001785829.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662518|gb|EDQ49361.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 538

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 205/371 (55%), Gaps = 9/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D+ L   ++  V    Y  PTPIQ + +P+ L   D+ G A+TG+GKTA+F LPM+  
Sbjct: 112 FEDMCLHLSIMKDVTFHNYTTPTPIQAQALPVALSGRDLLGCAETGSGKTAAFSLPMIQH 171

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
            + +    R   P  L+L PTRELA Q+    + + ++      ++++GG     Q  +L
Sbjct: 172 CLAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSAEGFKTSIVVGGTNIYEQRSEL 231

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G ++++ TPGR +DH  +G   ++ +  +V+DEADRMLDMGF P I+ +   +P   Q
Sbjct: 232 RAGVEIVVATPGRFIDHLQQGNSSLSRVSYVVLDEADRMLDMGFEPQIREVMRSLPKKHQ 291

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALL-- 235
           TLLFSATM +E++ +++ +L  P R++V   SS    +      +    +     ALL  
Sbjct: 292 TLLFSATMPEEIEALAQEYLNKPVRVKVGRVSSPTANVTQNLEKITEKEKIDSLLALLVD 351

Query: 236 --QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
              Q L S       I+F  +K     +  +L +QG    A+HG   Q  R   L +F++
Sbjct: 352 EHSQSLDSNQPPPLTIVFVERKARCDEVTDALVEQGLKATALHGGRSQSEREAALRDFRK 411

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           GT  ++VA+D+A+RGLD+  V HV N D+P   E+Y+HRIGRTGRAG  G+A +   + D
Sbjct: 412 GTTNILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGASGRATSFYTERD 471

Query: 354 IKHIDAIEKLI 364
           +  +  I + I
Sbjct: 472 VFLVAQIRRAI 482


>gi|148235819|ref|NP_001089455.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Xenopus laevis]
 gi|66910710|gb|AAH97561.1| MGC114699 protein [Xenopus laevis]
          Length = 758

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 142/368 (38%), Positives = 208/368 (56%), Gaps = 11/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+    + +PTPIQ   IP+ L   D+C  A TGTGKTA+F+LP+L
Sbjct: 181 LTFQDMNLSRPLLKAISAMSFTQPTPIQKACIPVGLLGKDICACAATGTGKTAAFMLPVL 240

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L        + R L+L PTREL  QV     +  +   +T  L +GG+  + Q   L 
Sbjct: 241 ERLIYKPREAPVTRVLVLVPTRELGIQVHAVTRQLAQFTEVTTCLAVGGLDVKTQEAALR 300

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            G DVLI TPGR++DH  N     +N IE+L++DEADRMLD  F   ++ I  L    RQ
Sbjct: 301 SGPDVLIATPGRLIDHLHNCPSFSLNCIEVLILDEADRMLDEYFEEQMKEIIRLCSHQRQ 360

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCAL 234
           TLLFSATM++E++ ++   L+NP RI VN+ +  A  +   FV         + +  CAL
Sbjct: 361 TLLFSATMSEEVKDLASVSLRNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAVACAL 420

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L +  Q      + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+ 
Sbjct: 421 LTRTFQD-----HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDE 475

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I ++VA+D+AARGLDI  V  V N  +P   ++Y+HR+GRT RAG+ G++ +LV +E+ 
Sbjct: 476 QIDILVATDVAARGLDIDGVKTVINLTMPGTVKHYVHRVGRTARAGKAGRSVSLVGEEER 535

Query: 355 KHIDAIEK 362
           K +  I K
Sbjct: 536 KMLKEIVK 543


>gi|294140317|ref|YP_003556295.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293326786|dbj|BAJ01517.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 431

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 217/372 (58%), Gaps = 10/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P+++  +    Y+ PT +Q K IP VL   D+   A TG+GKTA+F LPML  
Sbjct: 15  FEQLGLIPELLKRLTLLEYLNPTLVQGKAIPAVLLGRDLLAGAITGSGKTAAFALPMLQK 74

Query: 63  LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNK 117
           L K  A+V        L+L PTRELA QVAD+F+ YG+     L +  + GG+    Q  
Sbjct: 75  LAKSSAKVSKGNQVCGLVLVPTRELAQQVADSFKSYGQLIKPRLKIEAVFGGVSANTQML 134

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +  GADVL+ TPGR+LD  +   + +++++ LV+DEADRML +GF   +  + +L+P  
Sbjct: 135 AMRGGADVLVATPGRLLDLISSNAIKLDDVKTLVLDEADRMLSLGFTEELNQVLALLPKH 194

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTLLFSAT  +E++ +++  L +P  +E+   S    T++          ++K ALL  
Sbjct: 195 KQTLLFSATFPEEVKTLTDKLLSSP--VEIQIQSEEQSTLKQQVYTV--NRTRKTALLAH 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++ ++  +  ++F + K     L   L K G +    H +  Q +R K+L  FK G   
Sbjct: 251 LIK-ENNWRQVLVFASAKNTCNRLEQKLAKAGIAAQIFHSDKSQGARTKVLEAFKNGETH 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARG+DI  +  V N+++P    +Y+HRIGR+GRAG  G A +L++ ++ +H 
Sbjct: 310 VLIATDIAARGIDIEKLPVVINYELPRSPVDYMHRIGRSGRAGEAGLALSLISHDEYQHF 369

Query: 358 DAIEKLIEKKVD 369
             IEK  + K+D
Sbjct: 370 KLIEKKNKIKLD 381


>gi|302308420|ref|NP_985329.2| AFL221Cp [Ashbya gossypii ATCC 10895]
 gi|299790624|gb|AAS53153.2| AFL221Cp [Ashbya gossypii ATCC 10895]
          Length = 557

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 129/356 (36%), Positives = 202/356 (56%), Gaps = 11/356 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V + G+ KPT IQ +  P+ L   D+ G+A TG+GKT S+ LP +  
Sbjct: 116 FDEAGFPEYVLKEVKEEGFEKPTAIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVH 175

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+G++  +    + GG+P   Q 
Sbjct: 176 INAQPLLSPGDG----PVVLVLAPTRELAVQIQKECSKFGRSSRIRNTCVYGGVPKSQQI 231

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+RG ++LI TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 232 RDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 291

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E+Q+++ ++L +P ++ + +    A       V   + + K+  L++
Sbjct: 292 DRQTLMWSATWPKEVQQLARDYLHDPIQVNIGSLELAASHTITQLVEVVSDFDKRDRLVK 351

Query: 237 QL-LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L + S+D     IIF + K+    +   L + G+   AIHG+  Q+ R  +L+ F+ G 
Sbjct: 352 HLEIASKDKDSKIIIFASTKRTCDEITSYLRQDGWPALAIHGDKQQQERDWVLNEFRTGR 411

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
             +MVA+D+AARG+D+  +  V N+D+P   E+Y+HRIGRTGRAG  G A +   +
Sbjct: 412 SPIMVATDVAARGIDVKGINFVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTE 467


>gi|170679910|ref|YP_001746099.1| ATP-dependent RNA helicase RhlB [Escherichia coli SMS-3-5]
 gi|226739537|sp|B1LLV3|RHLB_ECOSM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|170517628|gb|ACB15806.1| ATP-dependent RNA helicase RhlB [Escherichia coli SMS-3-5]
          Length = 421

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLCAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + IEV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|21222498|ref|NP_628277.1| ATP-dependent RNA helicase [Streptomyces coelicolor A3(2)]
 gi|5918498|emb|CAB56376.1| ATP-dependent RNA helicase [Streptomyces coelicolor A3(2)]
          Length = 740

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 134/346 (38%), Positives = 190/346 (54%), Gaps = 5/346 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L  
Sbjct: 63  FADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLAT 122

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  GR     PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LERG
Sbjct: 123 LAGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERG 182

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVL+ TPGR+ D  NRG   + N++I V+DEAD+M D+GF+P +  +   VP   Q +L
Sbjct: 183 VDVLVATPGRLRDIINRGACSLENVQIAVLDEADQMSDLGFLPEVTELLDQVPAGGQRML 242

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E++ + + +L++P   EV+       T+ H  +       K  A +   + S+
Sbjct: 243 FSATMENEIKTLVDRYLKDPALHEVDAAQGAVTTMSHHILVV---KPKDKAPVTAAIASR 299

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L   G    A+HG + Q +R + L++FK+G + ++VA+
Sbjct: 300 KGRT--IIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLVAT 357

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L
Sbjct: 358 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSL 403


>gi|119475746|ref|ZP_01616099.1| probable ATP-dependent RNA helicase [marine gamma proteobacterium
           HTCC2143]
 gi|119451949|gb|EAW33182.1| probable ATP-dependent RNA helicase [marine gamma proteobacterium
           HTCC2143]
          Length = 451

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 138/365 (37%), Positives = 214/365 (58%), Gaps = 6/365 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
            ++L L  +++ A+   G+ + T +Q + IP  L+R D+   AQTG+GKTA+F+LP+L  
Sbjct: 4   LSELALHKQLLKALDKLGFSEATEVQAQAIPEALKRRDLMVSAQTGSGKTAAFLLPILHQ 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +          R LIL PTRELA Q   NFE       +   L+IGG  F+ Q   L + 
Sbjct: 64  ILTEEVSTSGTRVLILLPTRELALQTQKNFEMLAAFTYIKSGLIIGGEAFKHQVATLRKD 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +VLI TPGR++DH  +G      +E+LV+DEADRMLDMGF   +  I S     RQ LL
Sbjct: 124 PEVLIATPGRLVDHIEKGTPDFRQLEVLVLDEADRMLDMGFAIDMNTIASSCNPERQNLL 183

Query: 183 FSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQ 240
           FSA++  E L K+S++F ++P  I V +P    + I +   +A   ++ +K  L++ L+ 
Sbjct: 184 FSASLKHEGLGKISKSF-RDPVAIAVGSPDHQHQDICQQLVLADTIKHKEK--LVEALID 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   K  ++FCN +     L H L  +   V  IHG+I Q  R ++++ F++G I ++V
Sbjct: 241 EEQAQKT-LVFCNTRVQCQQLSHLLRYKKMKVGYIHGDISQNDRKQVMNQFRQGGIAVLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V NF++    ++++HR+GRTGRAG  GKA TL+   +   + +I
Sbjct: 300 ATDVAARGLDIKGVDLVVNFNIAQSGDDHLHRVGRTGRAGEQGKAITLIDSNEWNQMSSI 359

Query: 361 EKLIE 365
           E+ ++
Sbjct: 360 ERYLK 364


>gi|260796379|ref|XP_002593182.1| hypothetical protein BRAFLDRAFT_209728 [Branchiostoma floridae]
 gi|229278406|gb|EEN49193.1| hypothetical protein BRAFLDRAFT_209728 [Branchiostoma floridae]
          Length = 614

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 146/393 (37%), Positives = 222/393 (56%), Gaps = 24/393 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DL L   +   +  + Y+KPTP+Q   IP+     D+   AQTG+GKTA+F++P+L+
Sbjct: 139 EFTDLDLGEIISNNIKLSNYMKPTPVQKYAIPIARANRDLMACAQTGSGKTAAFLIPILS 198

Query: 62  IL---------EKGR------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
           ++         + GR      +R R P  L+L PTRELA+Q+ D  +K+    ++   ++
Sbjct: 199 LIYENGPQGLPQHGRQYGGSGSRKRYPLALVLAPTRELASQIYDESKKFAYRSHVRPCVV 258

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RG++ ++ I+ L++DEADRMLDMGF P 
Sbjct: 259 YGGADIGGQMRDLERGCHLLVGTPGRLVDMMERGRIGLDYIKYLILDEADRMLDMGFEPQ 318

Query: 167 IQNITS--LVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I     +P T  R+T++FSAT   E+Q ++ +FL N   + V    ST++ I    V
Sbjct: 319 IRRIVEQDTMPGTGKRRTMMFSATFPKEIQMLARDFLDNYIFLAVGRVGSTSDNITQKVV 378

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
               Q  K+  LL  L  +       + F   KK   +L   L  +G+ V +IHG+  QR
Sbjct: 379 WVDEQ-DKRSFLLDLLNATGKEDSLTLTFVETKKGADSLEAFLYSEGYPVSSIHGDRSQR 437

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R   L  F+ G   ++VA+ +AARGLDIP+V HV NFD+P+  + Y+HRIGRTGR G  
Sbjct: 438 EREDALMTFRTGVTPILVATAVAARGLDIPNVKHVINFDLPSDIDEYVHRIGRTGRVGNL 497

Query: 343 GKAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
           G A +    ++   + D ++ LIE K +   WL
Sbjct: 498 GLATSFFNDKNRNVVRDLVDILIESKQELPPWL 530


>gi|332662776|ref|YP_004445564.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332331590|gb|AEE48691.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 442

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 218/369 (59%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+DL L+  ++ A+ D G   PT IQ K   +V+   DVCGIAQTGTGKT +++LP L
Sbjct: 1   MNFSDLNLNKPLLNALQDIGISTPTTIQAKVFSVVMSGKDVCGIAQTGTGKTFAYLLPCL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E  + +   P+ LI+ PTREL  QV +  EK  K  +L V  + GG+  + Q  +L 
Sbjct: 61  RQYEYSKKKT--PQVLIIVPTRELVTQVVEAVEKLSKYLSLVVVGVYGGVNLKPQAAQLA 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GADV++ TPGR++D  + G L   +++ LVIDE D ML++GF   ++ I   +P  RQ 
Sbjct: 119 QGADVVVGTPGRLVDLLSNGVLKTKDLKKLVIDEFDEMLNLGFRAQLKVIFDSIPERRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ ++++ +  ++  N  RIE     +  E I+  +      Y+ K +LL+ LL 
Sbjct: 179 LLFSATLNEDVELLIADYFDNLIRIEATPVGTPLENIDQSYYPVPNFYT-KVSLLKLLLT 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           S   M   ++F + K     +  +L E+ G  +  IH N  Q  R   ++ F  G  +++
Sbjct: 238 SNPEMSKVLVFVSTKSLADRVFEALDEEWGIKIQVIHSNKSQPFRFAAVNAFHAGESRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+ ARG+D+ +V HV NFD+P+  ENYIHRIGRTGR  R G A + V +++ +++  
Sbjct: 298 IATDIIARGIDVAEVTHVINFDMPSVPENYIHRIGRTGRVERKGIAISFVTEKEQEYLTE 357

Query: 360 IEKLIEKKV 368
           IEKL+   V
Sbjct: 358 IEKLMNYSV 366


>gi|256786437|ref|ZP_05524868.1| ATP-dependent RNA helicase [Streptomyces lividans TK24]
 gi|289770328|ref|ZP_06529706.1| ATP-dependent RNA helicase [Streptomyces lividans TK24]
 gi|289700527|gb|EFD67956.1| ATP-dependent RNA helicase [Streptomyces lividans TK24]
          Length = 728

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 134/346 (38%), Positives = 190/346 (54%), Gaps = 5/346 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L  
Sbjct: 51  FADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLAT 110

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  GR     PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LERG
Sbjct: 111 LAGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERG 170

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVL+ TPGR+ D  NRG   + N++I V+DEAD+M D+GF+P +  +   VP   Q +L
Sbjct: 171 VDVLVATPGRLRDIINRGACSLENVQIAVLDEADQMSDLGFLPEVTELLDQVPAGGQRML 230

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E++ + + +L++P   EV+       T+ H  +       K  A +   + S+
Sbjct: 231 FSATMENEIKTLVDRYLKDPALHEVDAAQGAVTTMSHHILVV---KPKDKAPVTAAIASR 287

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L   G    A+HG + Q +R + L++FK+G + ++VA+
Sbjct: 288 KGRT--IIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLVAT 345

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L
Sbjct: 346 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSL 391


>gi|67967779|dbj|BAE00372.1| unnamed protein product [Macaca fascicularis]
          Length = 764

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 208/363 (57%), Gaps = 1/363 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PT IQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 186 LSFQDMNLSRPLLKAITAMGFKQPTSIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 245

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 246 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 305

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 306 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 365

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 366 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 425

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 426 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 485

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 486 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 545

Query: 360 IEK 362
           I K
Sbjct: 546 IVK 548


>gi|120599366|ref|YP_963940.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|146292637|ref|YP_001183061.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|120559459|gb|ABM25386.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145564327|gb|ABP75262.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 449

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 208/370 (56%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L  +++ ++   G   PT IQ +T+P+ L   D+   ++TG+GKT +F+LP L
Sbjct: 1   MQFTDFSLDQRLLQSLKHMGITAPTAIQEQTLPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   R+   R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRVISTRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            +    ++ TPGRI DH  +  L +N +E+L++DEADRMLD+GF P ++ I       R 
Sbjct: 121 AKEPHFIVATPGRIADHLEQKHLFLNGLELLILDEADRMLDLGFAPQLKTINEAADHKRR 180

Query: 179 QTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   E+  ++   L+NP  + ++   S    I +  F+  +  +  K ALL 
Sbjct: 181 QTLMFSATLDHSEINDIAATLLKNPAHVAIDASHSEHNDIHQRIFLCDHLDH--KEALLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LLQ + T K  I+F   + +   L   L  QGF+  A+ G++ Q +R +I+  F  G  
Sbjct: 239 RLLQDE-THKQVIVFTATRPDTERLAAKLSTQGFATAALSGDLKQAARNQIMDQFARGQQ 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +
Sbjct: 298 QILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDN 357

Query: 357 IDAIEKLIEK 366
              ++  + K
Sbjct: 358 FKKVQIFLRK 367


>gi|171656|gb|AAA34666.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae]
          Length = 722

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 147/407 (36%), Positives = 227/407 (55%), Gaps = 23/407 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L LS  V+  +   GYVKP+PIQ  TIP+ L   D+   A TG+GKTA+F++P++ 
Sbjct: 202 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 261

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L    A++   R ++L PTRELA QVAD  ++  +  + +T  L +GG+    Q + L+
Sbjct: 262 RLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLK 321

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D++I TPGR +DH  N     ++++EILV+DEADRML+ GF   +  I  L+P  RQ
Sbjct: 322 SRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQ 381

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  +++ +    L+ P RI ++ P   A  +   FV    +   K ALL  L+
Sbjct: 382 NLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLI 441

Query: 240 QSQD--TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  D    K  ++F  +K+    L   +   G SV  +HG++ Q  R+  ++ FK   + 
Sbjct: 442 RKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVP 501

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---- 353
           +++ +DLA+RGLDIP +  V N+D+P   E Y+HR+GRT RAGR G++ T V +      
Sbjct: 502 VLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 561

Query: 354 -----IKHIDAIEKLIEKK-----VDWL-----NGDLSSLNPPLEKI 385
                IK ++  + L + K     VDW+     N  + S+N  +E I
Sbjct: 562 IVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMNDTIEDI 608


>gi|283787538|ref|YP_003367403.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
 gi|282950992|emb|CBG90669.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
          Length = 421

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 212/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P+V+ A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPQVIEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAT 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|222109707|ref|YP_002551971.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221729151|gb|ACM31971.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
          Length = 469

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 218/392 (55%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LSP+++  +   GY + TPIQ  ++P  LQ  D+   A TG+GKTA+F L M+  
Sbjct: 16  FSSLPLSPEMLANLQQLGYAQMTPIQAASLPFSLQGRDLIAQASTGSGKTAAFGLAMVDR 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L     R    + L+L PTRELA QVA    +  +   N+ V  + GG+P   Q   LE 
Sbjct: 76  LNP---RWFAVQGLVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRGQIASLEN 132

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++D   RGKL +  ++ LV+DEADRMLDMGF+  I+ +    P  RQTL
Sbjct: 133 GAHIVVGTPGRVMDLMERGKLDIAKLKTLVLDEADRMLDMGFLADIETVVRQCPAERQTL 192

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D +  +++ F++ P+ ++V       +  +  +        +K  ++ ++L +
Sbjct: 193 LFSATYPDGIAGLAQRFMRAPQMVKVAAQHGAGKIAQRWY---EVDAREKVDVVARML-A 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   N+  +L+ QGFS  A+ G ++QR R ++L  F   +  ++VA
Sbjct: 249 HFRPASSIAFCNTKQQCRNVVTALQSQGFSALALFGELEQRERDEVLVQFANKSCSVLVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI D+  V N DV    E +IHRIGRTGR    G A  LV+ +++  +  IE
Sbjct: 309 TDVAARGIDIADLSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLVSMDEMGSVGKIE 368

Query: 362 KLIEKKVDWLNGDL------SSLNPPLEKIDI 387
            L  +  ++   D         L PP+  I I
Sbjct: 369 LLQGRACEFFPVDELTPTAGGELQPPMCTIQI 400


>gi|254430075|ref|ZP_05043782.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
 gi|196196244|gb|EDX91203.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
          Length = 428

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 146/412 (35%), Positives = 224/412 (54%), Gaps = 24/412 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L   ++  + D+G+   TPIQ + +   L   D  G AQTGTGKTA+F++ ++  
Sbjct: 25  FHDFDLHLDLMHGIADSGFQYCTPIQAEVLTHTLAGADAIGRAQTGTGKTAAFLITVIND 84

Query: 63  LEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L K    V+     PR LI+ PTRELA Q+  + +   K+ +L V  ++GG+ F  Q ++
Sbjct: 85  LLKHPIDVQRFAGEPRALIVAPTRELAMQIEKDAKVLAKHTDLQVMSVVGGMNFNRQQER 144

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+ +  D+L+ TPGR+LD   R  L ++ +E LV+DEADRMLDMGFIP ++ I  + P +
Sbjct: 145 LQNKLIDILVATPGRLLDFAKRRDLWLDRVEFLVLDEADRMLDMGFIPDVKRIVGMTPKS 204

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT LFSAT  D++  +S  + Q+ + +E+     T +T+E     T      K  LL
Sbjct: 205 QYRQTQLFSATFNDDVMNLSRRWTQDAEVVEIEPTQVTTDTVEQKVYIT--NTDDKFKLL 262

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+   + M   I+F N++     +   L K+G  V  I G++ Q  R K L  F+ G 
Sbjct: 263 YNLITGMN-MDKVIVFANRRDITRRVSDRLHKKGLKVSLISGDVPQTQRSKTLERFRAGD 321

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q+++A+D+A RG+ I  V HV N+++P   E+Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 322 LQVLIATDVAGRGIHIDGVSHVVNYNLPEDPEDYVHRIGRTGRAGASGMSISFACEDDAF 381

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
            +  +E  I  K       L    PP + +       A K    P K+ G D
Sbjct: 382 LLPELENAIGMK-------LECEYPPADLL-------AEKETAAPMKAPGHD 419


>gi|323303947|gb|EGA57727.1| Drs1p [Saccharomyces cerevisiae FostersB]
          Length = 755

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 147/407 (36%), Positives = 227/407 (55%), Gaps = 23/407 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L LS  V+  +   GYVKP+PIQ  TIP+ L   D+   A TG+GKTA+F++P++ 
Sbjct: 235 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 294

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L    A++   R ++L PTRELA QVAD  ++  +  + +T  L +GG+    Q + L+
Sbjct: 295 RLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLK 354

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D++I TPGR +DH  N     ++++EILV+DEADRML+ GF   +  I  L+P  RQ
Sbjct: 355 SRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQ 414

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  +++ +    L+ P RI ++ P   A  +   FV    +   K ALL  L+
Sbjct: 415 NLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLI 474

Query: 240 QSQD--TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  D    K  ++F  +K+    L   +   G SV  +HG++ Q  R+  ++ FK   + 
Sbjct: 475 RKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVP 534

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---- 353
           +++ +DLA+RGLDIP +  V N+D+P   E Y+HR+GRT RAGR G++ T V +      
Sbjct: 535 VLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 594

Query: 354 -----IKHIDAIEKLIEKK-----VDWL-----NGDLSSLNPPLEKI 385
                IK ++  + L + K     VDW+     N  + S+N  +E I
Sbjct: 595 IVRAAIKSVEENKSLTQGKALGXNVDWVQIEETNKLVESMNDTIEDI 641


>gi|313771958|gb|EFS37924.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
          Length = 564

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 146/398 (36%), Positives = 225/398 (56%), Gaps = 24/398 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L  
Sbjct: 55  FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 114

Query: 63  L----EKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    ++G   +     P+ L++ PTRELA QV+ +           V  + GG+ +E+Q
Sbjct: 115 ITLPGDEGWGELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLAVYGGVGYESQ 174

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G DV++ TPGR+LD   R  L ++++ I+V+DEAD MLD+GF+P ++N+    P
Sbjct: 175 IDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTP 234

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYAQYSKKC 232
            +RQT+LFSATM   +  ++ + L+ P  +     +T ++  +T +  +    A    K 
Sbjct: 235 ASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY---QAHPLDKI 291

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            ++ ++LQ+ D  K  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+
Sbjct: 292 EIIGRILQANDVEKV-IIFCRTKRACQRLSDDLDARGFKPRAIHGDLTQVAREKALKKFR 350

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   
Sbjct: 351 HGEATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWA 410

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           D+       KLI K    LN +LS    P+E    + H
Sbjct: 411 DVTRW----KLINKA---LNLELSE---PVETYSTSPH 438


>gi|260800277|ref|XP_002595060.1| hypothetical protein BRAFLDRAFT_125765 [Branchiostoma floridae]
 gi|229280302|gb|EEN51071.1| hypothetical protein BRAFLDRAFT_125765 [Branchiostoma floridae]
          Length = 875

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 133/344 (38%), Positives = 198/344 (57%), Gaps = 11/344 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA  G   +++  +  + Y +PTPIQ + IP+ L   D+ GIA+TG+GKTA+FV PML  
Sbjct: 238 FAHFGFDEQLLHQIRKSEYSQPTPIQAQGIPVALSGRDIIGIAKTGSGKTAAFVWPMLVH 297

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  LI  PTREL+ Q+    +++GK Y L+V    GG     Q 
Sbjct: 298 IMDQKELEPGDG----PIGLICAPTRELSQQIYAEAKRFGKCYGLSVVAAYGGGSMWEQT 353

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GA++++CTPGR++D   +    +  +  LV DEADRM DMGF P +++I + V  
Sbjct: 354 KALQLGAEIVVCTPGRLIDLVKKKATNLQRVTYLVFDEADRMFDMGFEPQVRSIANHVRP 413

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT    ++++  + L +P ++         E ++   V  +     K   L 
Sbjct: 414 DRQTLLFSATFKKRIERLCRDILMDPIKVVQGDLGEANEDVQQ-IVEIFPAGPPKWQWLT 472

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + L    ++ + +IF  +K N   L  +L+ Q F    +HG++DQ  R K++S+FK+ TI
Sbjct: 473 RRLVEFTSVGSVLIFVTKKANSEELASNLKAQDFEAGLLHGDMDQSERNKVISDFKKKTI 532

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
            +MVA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG
Sbjct: 533 PVMVATDVAARGLDIPSIKTVVNYDVARDIDTHTHRIGRTGRAG 576


>gi|257466549|ref|ZP_05630860.1| ATP-dependent RNA helicase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917704|ref|ZP_07913944.1| ATP-dependent RNA helicase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691579|gb|EFS28414.1| ATP-dependent RNA helicase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 528

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 215/368 (58%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60
           +F +LG+  K++ A+   GY  PTPIQ  TIP +L    D+ G AQTGTGKTA+F LP+L
Sbjct: 9   EFRELGIGEKLLKALSKKGYETPTPIQSLTIPALLTGEKDIIGQAQTGTGKTAAFALPIL 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +E         + ++L PTRELA QVA+     G +  + +  + GG   + Q K L 
Sbjct: 69  ENIEHQDK----IQGIVLTPTRELALQVAEEMNSLGSSKKIKIIPVYGGQSIDIQRKLLR 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+++ TPGR++D   R  L + +++  ++DEAD ML+MGF+  ++ I       ++ 
Sbjct: 125 NGADIIVGTPGRVIDFIERKFLRLQDLKYFILDEADEMLNMGFLEEVEKILEATNEDKRM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM +E+ KV++  +++ + + V     T +  +  +     +  K  AL + +  
Sbjct: 185 LFFSATMPNEILKVAKKHMKDYEILAVKARELTTDLTDQIYFEV-NERDKFEALCRIIDL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++D    GI+FC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I ++V
Sbjct: 244 AEDFY--GIVFCRTKTDVNEVVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKAKKINILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV N+ +P  AE+Y+HRIGRTGRAG+ G A T +  ++ + +  I
Sbjct: 302 ATDVAARGIDVNDLSHVINYAIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 361

Query: 361 EKLIEKKV 368
           +K+++ ++
Sbjct: 362 QKIVKTEI 369


>gi|168212498|ref|ZP_02638123.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens CPE str.
           F4969]
 gi|170715966|gb|EDT28148.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens CPE str.
           F4969]
          Length = 478

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 129/364 (35%), Positives = 220/364 (60%), Gaps = 6/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ A+ + GY  P+ +Q  +IP +L+  D+   +QTG+GKTASF +P+ 
Sbjct: 1   MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPLC 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK     +  + L+L PTRELA QV D     G+   +  A + G  PF  Q ++L+
Sbjct: 61  ---EKINIEEKKVQCLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIRELK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+ DH  RG L ++ +  +VIDEAD+ML MGFI  I++I   +   + T
Sbjct: 118 QRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT + E++++ E +++NP  +EV +     + IE   +    + +K  AL + L  
Sbjct: 178 ALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEK-NKGKALWKCLYA 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ I+FCN +  V ++   L+ +G +   +HG+++Q+ R++++ NF++   +++V
Sbjct: 237 YHP--ESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ +  +  V N++VP   E+Y+HRIGRTGRAGR GKA T V   + K+++ +
Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 354

Query: 361 EKLI 364
           E+ I
Sbjct: 355 EEYI 358


>gi|195498992|ref|XP_002096759.1| GE25850 [Drosophila yakuba]
 gi|194182860|gb|EDW96471.1| GE25850 [Drosophila yakuba]
          Length = 688

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 131/352 (37%), Positives = 203/352 (57%), Gaps = 14/352 (3%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE----- 64
           P ++  +   G+ KP+PIQ +  P++LQ HD+ GIAQTGTGKT +F+LP +   E     
Sbjct: 277 PDLLGEITKMGFPKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTP 336

Query: 65  ---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +G A V     L+L PTRELA Q+    +KY    N+    + GG     Q   LER
Sbjct: 337 RGTRGGANV-----LVLAPTRELALQIEMEVKKYSFR-NMKAVCVYGGGDRRMQISDLER 390

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+++ICTPGR+ D      + ++ I  LV+DEADRMLDMGF P I+ +   +   RQT+
Sbjct: 391 GAEIIICTPGRLNDLVQANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTI 450

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT    ++++++++++NP ++ V +    A       +       +K + ++  +++
Sbjct: 451 MTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIQLLEDDREKFSTIKSFVRN 510

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFC +K    +L   L   GF    IHGN DQ  R + +++ K G + ++VA
Sbjct: 511 MSNTDKIIIFCGRKARADDLSSDLTLDGFMTQCIHGNRDQSDREQAIADIKSGAVHILVA 570

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +D+A+RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + + + +ED
Sbjct: 571 TDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGRAGRKGTSISFITRED 622


>gi|145632667|ref|ZP_01788401.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655]
 gi|229846508|ref|ZP_04466616.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 7P49H1]
 gi|144986862|gb|EDJ93414.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655]
 gi|229810601|gb|EEP46319.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 7P49H1]
          Length = 439

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 135/383 (35%), Positives = 212/383 (55%), Gaps = 6/383 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP L  
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   P  LIL PTRELA QVA+  E+  +  +L +A + GG+ ++        
Sbjct: 66  LLDYPRRKPGPPCILILTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QTL
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  EL    +E  L +P +++        + I   +    +    K  LL + ++
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   + GI+F  ++++   +  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 245 TEKVTR-GIVFVRRREDAREVSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381
           ++  E+  K   L G      PP
Sbjct: 364 KRYTEEILKARILAGLEPRTKPP 386


>gi|118082784|ref|XP_416260.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
           [Gallus gallus]
          Length = 655

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 214/378 (56%), Gaps = 19/378 (5%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEK 65
           V+ A++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        LE+
Sbjct: 101 VMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER 160

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
           G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG ++
Sbjct: 161 GDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEI 216

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
            I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL++SA
Sbjct: 217 CIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 276

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQLLQ 240
           T   E+++++E+FLQ+  +I V     +A     + ++ C  +   +  K   L+++++ 
Sbjct: 277 TWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESE--KDHKLIQLMEEIMA 334

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   +++
Sbjct: 335 EKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILI 392

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    +
Sbjct: 393 ATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQAREL 452

Query: 361 EKLIEKKVDWLNGDLSSL 378
            K++E+    +N  L  L
Sbjct: 453 IKVLEEANQAINPKLMQL 470


>gi|257463152|ref|ZP_05627553.1| ATP-dependent RNA helicase [Fusobacterium sp. D12]
 gi|317060745|ref|ZP_07925230.1| ATP-dependent RNA helicase [Fusobacterium sp. D12]
 gi|313686421|gb|EFS23256.1| ATP-dependent RNA helicase [Fusobacterium sp. D12]
          Length = 528

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 215/368 (58%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60
           +F DLG+  K++ A+   GY  PTPIQ  TIP +L    D+ G AQTGTGKTA+F LP+L
Sbjct: 9   EFRDLGIGEKLLKALSKKGYETPTPIQSLTIPALLTGEKDIIGQAQTGTGKTAAFALPIL 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +E         + ++L PTRELA QVA+     G +  + +  + GG   + Q K L 
Sbjct: 69  ENIEHQDK----IQGIVLTPTRELALQVAEEMNSLGSSKKIKIIPVYGGQSIDIQRKLLR 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+++ TPGR++D   R  L + +++  ++DEAD ML+MGF+  ++ I       ++ 
Sbjct: 125 TGADIIVGTPGRVIDFIERKFLRLQDLKYFILDEADEMLNMGFLEEVEKILEATNEDKRM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM +E+ KV++  +++ + + V     T +  +  +     +  K  AL + +  
Sbjct: 185 LFFSATMPNEILKVAKKHMKDYEILAVKARELTTDLTDQIYFEV-NERDKFEALCRIIDL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++D    GI+FC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I ++V
Sbjct: 244 AEDFY--GIVFCRTKTDVNEVVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKARKINILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV N+ +P  AE+Y+HRIGRTGRAG+ G A T +  ++ + +  I
Sbjct: 302 ATDVAARGIDVNDLSHVINYAIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 361

Query: 361 EKLIEKKV 368
           +++++ ++
Sbjct: 362 QRIVKTEI 369


>gi|87118190|ref|ZP_01074089.1| ATP-independent RNA helicase DbpA [Marinomonas sp. MED121]
 gi|86165824|gb|EAQ67090.1| ATP-independent RNA helicase DbpA [Marinomonas sp. MED121]
          Length = 461

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 141/371 (38%), Positives = 208/371 (56%), Gaps = 7/371 (1%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           D+ L  K+   + D G+   TPIQ +T+P +L  +D+   AQTG+GKT +F + ML    
Sbjct: 9   DIQLPTKLTALLSDLGFETFTPIQAQTLPSILSDNDILAQAQTGSGKTLAFAIGMLM--- 65

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGA 123
           K   R    + L++ PTRELA QV     K  +   N+ V  L GG+PF  Q   LE GA
Sbjct: 66  KINPRYFGVQGLVMCPTRELADQVCKEIRKTARFLENIKVLSLCGGMPFGPQIGSLEHGA 125

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            +++ TPGR+L+H  +G L ++++  LV+DEADRMLDMGF+  I+ +    P  RQTL+F
Sbjct: 126 HIVVGTPGRLLEHVRKGTLRLDSLNTLVLDEADRMLDMGFVDSIRTLVESTPKKRQTLMF 185

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT  + + K+S  F  NPK I+V     +   I+  FV +      K   L   ++ Q+
Sbjct: 186 SATYPETIGKISAEFQHNPKTIKVEATQESKPDIKQFFVKS--NKDDKPYALMSAVRYQN 243

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +  I+FCN K     +   L     S  AIHG+++QR R ++L  F   + +++VA+D
Sbjct: 244 P-EQAIVFCNTKIECQTIADFLVDHKISAKAIHGDLEQRDRDQVLVQFSNASCRILVATD 302

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARG+D+ +V  V N+D     + + HRIGRTGRAG  G A  LV  +D   +  IE  
Sbjct: 303 VAARGIDVKEVDTVINYDTTRDIDVHTHRIGRTGRAGNKGVAINLVTDKDTYKVKDIEDR 362

Query: 364 IEKKVDWLNGD 374
            E + D+L  D
Sbjct: 363 FEIQADYLELD 373


>gi|323453625|gb|EGB09496.1| hypothetical protein AURANDRAFT_10388 [Aureococcus anophagefferens]
          Length = 589

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 212/379 (55%), Gaps = 32/379 (8%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
           ADLG    ++ A+ DAGY +P+PIQ + IP+ L+  D+ G+A+TG+GKTA+F +PM+  +
Sbjct: 181 ADLG--EPLLMAIRDAGYKEPSPIQRQAIPVGLELRDIIGVAETGSGKTAAFCIPMIRYI 238

Query: 64  EK-GRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            K   AR+       P  L++ PTRELA Q+A   +K   + ++ V  ++GG+  E Q  
Sbjct: 239 SKLPAARIASLADDGPLALVMAPTRELATQIAGECKKLTAHMDMNVTTVVGGMSIEDQAF 298

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV--- 174
            L  G ++++ TPGRI D  +   L++N    +V+DEADRM+DMGF P + +I   +   
Sbjct: 299 VLREGVEIIVGTPGRIQDCLDTQYLVLNQANYVVLDEADRMIDMGFEPQVHSILEEMGGL 358

Query: 175 --------------------PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA 214
                                  R T +FSATM   ++K+++ FL++P  + +    S  
Sbjct: 359 LLSEDDIEMEQQRLAVQRGEACYRITAMFSATMPSAVEKLAKKFLRHPAIVCIGDEDSGK 418

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
                  V   A+ +KK A++  +L+ +      ++FCN+KK    L   L   G     
Sbjct: 419 NKRIAQHVLYIAEAAKKNAVV-DILRKKKAQDKYLVFCNEKKGCDALAKVLSTAGLRSSV 477

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG   Q  R   L+ +K G++ ++VA+D+A RGLDIPDV HV N+D+P + ENY HRIG
Sbjct: 478 LHGGKTQEHRDATLAAYKAGSVTVLVATDVAGRGLDIPDVAHVVNYDMPLKIENYSHRIG 537

Query: 335 RTGRAGRHGKAFTLVAKED 353
           RTGRAG+ G A TL+   D
Sbjct: 538 RTGRAGKDGVATTLLTDSD 556


>gi|284006731|emb|CBA71988.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
          Length = 449

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 134/353 (37%), Positives = 200/353 (56%), Gaps = 4/353 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ A+ D GY +PT IQ+ TIP  ++  D+ G + TGTGKTA+++LP++  
Sbjct: 13  FSELELDQSLLNALDDKGYERPTAIQLATIPAAMEGRDILGSSPTGTGKTAAYLLPVIQH 72

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R R   PR LIL PTRELA QVA+  +   K  +L +A + GG+ +    +    
Sbjct: 73  LLDFPRKRSGPPRILILTPTRELAMQVAEQAKALAKYTHLDIATITGGVSYVNHAEIFSE 132

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          IE L++DEADRMLDMGF   I+ I     + +QT+
Sbjct: 133 NQDIVVATTGRLLQYIKEENFDCRAIETLILDEADRMLDMGFANDIETIAGETRWRKQTM 192

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  E +   +E  L NP  I+ +      + I+  +         K ALL  LL+
Sbjct: 193 LFSATLAGEAIHDFAERLLNNPHEIDADPSRRERKKIQQYYYRA-DNLEHKTALLCHLLK 251

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  K+ IIF  +++    L   L++       + G + Q  R + +     G I ++V
Sbjct: 252 QPDASKS-IIFVRKRERAHELVQWLQQANIKTWLLEGEMVQAKRTEAVKRLNSGQINVLV 310

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           A+D+A+RGLDI D+ HVFNFD+P  A+ Y+HRIGRT RAGR G A +LV   D
Sbjct: 311 ATDVASRGLDIDDISHVFNFDLPRTADVYLHRIGRTARAGRKGIAISLVEAHD 363


>gi|329297879|ref|ZP_08255215.1| ATP-dependent RNA helicase RhlB [Plautia stali symbiont]
          Length = 431

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 147/391 (37%), Positives = 223/391 (57%), Gaps = 17/391 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P+VV A+ +  +   TPIQ   +P  L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPQVVEALDEKDFHNCTPIQALALPFALSGRDVAGQAQTGTGKTLAFLTSTFHY 70

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L      +GR +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  +E Q K
Sbjct: 71  LLSHPAAEGR-QVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYEKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+L+ T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLADGVDILVGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPA 189

Query: 178 RQ--TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234
            Q  ++LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  L
Sbjct: 190 TQRLSMLFSATLSYRVRELAFEHMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRL 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ LL+ ++     I+F N K    ++   L   G  V  ++G++ Q+ R++IL +  +G
Sbjct: 247 LQTLLE-EEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLNGDVAQKKRLRILDDVTKG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E  
Sbjct: 306 DVDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGASGHSISLACEEYA 365

Query: 355 KHIDAIEKLIEKK--VDWLNGD--LSSLNPP 381
            ++ AIE+ I     V   N D  LS L PP
Sbjct: 366 LNLPAIEEYIGHGIPVSKYNSDALLSDLPPP 396


>gi|254482117|ref|ZP_05095359.1| DbpA RNA binding domain family protein [marine gamma
           proteobacterium HTCC2148]
 gi|214037807|gb|EEB78472.1| DbpA RNA binding domain family protein [marine gamma
           proteobacterium HTCC2148]
          Length = 459

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 142/385 (36%), Positives = 221/385 (57%), Gaps = 13/385 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L    +  ++  GY   T IQ  ++PL  +  D+   A+TG+GKTA+F LP+L  
Sbjct: 6   FSSLPLPKDQLDNLISLGYASMTGIQAASLPLAFKGKDLIAQAKTGSGKTAAFSLPLL-- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
            +K   R    + L+L PTRELA QV+    +  +   N+ V  L GG     Q   LE 
Sbjct: 64  -DKLNPRDFGTQALVLCPTRELATQVSGEIRRLARYRQNIKVVTLCGGQSIGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI DH  +  L +  ++ LV+DEADRML+MGF+  I +I    P  RQTL
Sbjct: 123 GAHIVVGTPGRISDHLRKKTLNLTRVDTLVLDEADRMLEMGFVEDISSIIEQTPAARQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D+++ +S  F + P+RI V T  +  +  +  FV    Q S +   L  LL +
Sbjct: 183 LFSATYPDDIEALSARFQKQPERISVETMHNDQQIDQQFFVC---QKSARLDGLVTLL-N 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  ++FCN K+ V ++   L++ G    A+HG+++QR R ++L  F++ +  ++VA
Sbjct: 239 HFAPQTAVVFCNTKQLVRDVTAHLDESGIRALALHGDMEQRDRDQVLIQFRQQSCSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V NF++P   E Y+HR+GRTGRAG+ G A +L A  +   ++ I 
Sbjct: 299 TDVAARGLDIDDLPVVVNFELPRETEVYVHRVGRTGRAGKAGLALSLFADSEQYKLEKIR 358

Query: 362 KLIE-----KKVDWLNGDLSSLNPP 381
           +L++     K +D ++     + PP
Sbjct: 359 QLLQQEPETKPIDSISVRGERMPPP 383


>gi|209447030|ref|NP_001129273.1| probable ATP-dependent RNA helicase DDX27 [Rattus norvegicus]
 gi|169642292|gb|AAI60885.1| Ddx27 protein [Rattus norvegicus]
          Length = 761

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 214/364 (58%), Gaps = 3/364 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 184 LTFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 243

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++  +  ++T  L +GG+  ++Q   L 
Sbjct: 244 ERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALR 303

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 304 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 363

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQL 238
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+     +   + A++  L
Sbjct: 364 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 423

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L    T  + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I +
Sbjct: 424 LMRTFT-DHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDI 482

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K + 
Sbjct: 483 LVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLK 542

Query: 359 AIEK 362
            I K
Sbjct: 543 EIVK 546


>gi|110803350|ref|YP_698172.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens SM101]
 gi|110683851|gb|ABG87221.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens SM101]
          Length = 478

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 129/364 (35%), Positives = 220/364 (60%), Gaps = 6/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ A+ + GY  P+ +Q  +IP +L+  D+   +QTG+GKTASF +P  
Sbjct: 1   MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + EK     +  + L+L PTRELA QV D     G+   +  A + G  PF  Q ++L+
Sbjct: 59  -VCEKINIEEKKVQCLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIRELK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+ DH  RG L ++ +  +VIDEAD+ML MGFI  I++I   +   + T
Sbjct: 118 QRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT + E++++ E +++NP  +EV +     + IE   +    + +K  AL + L  
Sbjct: 178 ALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEK-NKGKALWKCLYA 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ I+FCN +  V ++   L+ +G +   +HG+++Q+ R++++ NF++   +++V
Sbjct: 237 YHP--ESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ +  +  V N++VP   E+Y+HRIGRTGRAGR GKA T V   + K+++ +
Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 354

Query: 361 EKLI 364
           E+ I
Sbjct: 355 EEYI 358


>gi|127512383|ref|YP_001093580.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126637678|gb|ABO23321.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 441

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 138/364 (37%), Positives = 211/364 (57%), Gaps = 8/364 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ L L   +   +   GY + TPIQ K IP +L   D+   A+TG+GKTA+F LP+L 
Sbjct: 25  DFSQLNLVKALQARLHHLGYQQATPIQAKAIPAILAGRDLLAGAKTGSGKTAAFALPLLQ 84

Query: 62  ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKK 118
            L   RA        L+L PTRELA QVAD+F  YG        V  + GG+   +Q   
Sbjct: 85  KLVGQRAGGGNHVGALVLVPTRELAQQVADSFISYGAELAPRAKVIAVFGGVSVNSQMLA 144

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  GAD+L+ TPGR+LD      + ++ ++ LV+DEADRML++GF   +  I   +P  +
Sbjct: 145 LRGGADILVATPGRLLDLLGSNAVKLSQLKALVLDEADRMLNLGFTEELGEILKQLPDQK 204

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT  +E+  ++   L +P  I++    S A+  +  +       S K ALL +L
Sbjct: 205 QTLLFSATFPEEVLSLTAKLLTDPVEIQMQEAQS-ADIEQRVYTVNR---SNKTALLAEL 260

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ +   +  ++F + K++  +L   LEK+G S    HG+  Q +R ++L  FK G I +
Sbjct: 261 IKVRQ-WRQVLVFASAKRSCDHLAQKLEKRGISAQVFHGDKAQGARSRVLDGFKNGEITV 319

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI  +  V NF++P    +Y+HRIGR+GRAG  G+A +L++ ++  H  
Sbjct: 320 LIATDIAARGIDIDKLPVVINFELPRSPADYLHRIGRSGRAGETGEAISLISHDEYHHFK 379

Query: 359 AIEK 362
            IEK
Sbjct: 380 VIEK 383


>gi|168216267|ref|ZP_02641892.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens NCTC 8239]
 gi|182381904|gb|EDT79383.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens NCTC 8239]
          Length = 478

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 129/364 (35%), Positives = 220/364 (60%), Gaps = 6/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ A+ + GY  P+ +Q  +IP +L+  D+   +QTG+GKTASF +P  
Sbjct: 1   MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + EK     +  + L+L PTRELA QV D     G+   +  A + G  PF  Q ++L+
Sbjct: 59  -VCEKINIEEKKVQCLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIRELK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+ DH  RG L ++ +  +VIDEAD+ML MGFI  I++I   +   + T
Sbjct: 118 QRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT + E++++ E +++NP  +EV +     + IE   +    + +K  AL + L  
Sbjct: 178 ALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEK-NKGKALWKCLYA 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ I+FCN +  V ++   L+ +G +   +HG+++Q+ R++++ NF++   +++V
Sbjct: 237 YHP--ESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ +  +  V N++VP   E+Y+HRIGRTGRAGR GKA T V   + K+++ +
Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 354

Query: 361 EKLI 364
           E+ I
Sbjct: 355 EEYI 358


>gi|121715524|ref|XP_001275371.1| RNA helicase (Dbp), putative [Aspergillus clavatus NRRL 1]
 gi|134034064|sp|A1C6C4|DBP2_ASPCL RecName: Full=ATP-dependent RNA helicase dbp2
 gi|119403528|gb|EAW13945.1| RNA helicase (Dbp), putative [Aspergillus clavatus NRRL 1]
          Length = 549

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 208/373 (55%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ +PT IQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 127 FDEAGFPQYVLSEVKSQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 186

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 187 INAQPLLAPGDG----PIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQI 242

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 243 RDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 302

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT ++SAT   E+++++ +FL +  ++ + +   +A       V   + + K+  +++
Sbjct: 303 DRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 362

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L +  +   N I IF   K+    +   L + G+   +IHG+  Q+ R  +L+ FK G 
Sbjct: 363 HLEKIMEDRSNKILIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKAGK 422

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+A+RG+D+ D+ HV N+D PN +E+YIHRIGRTGRAG  G A T    ++ K
Sbjct: 423 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSK 482

Query: 356 HI-DAIEKLIEKK 367
              D +  L E K
Sbjct: 483 QARDLVTILTEAK 495


>gi|115488568|ref|NP_001066771.1| Os12g0481100 [Oryza sativa Japonica Group]
 gi|113649278|dbj|BAF29790.1| Os12g0481100 [Oryza sativa Japonica Group]
          Length = 832

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 146/366 (39%), Positives = 206/366 (56%), Gaps = 11/366 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  ++ A    GY KPTPIQ   IPL L   D+CG A TG+GKTA+F LP+L  
Sbjct: 226 FLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLER 285

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     RV   R LIL PTRELAAQV    EK  +  ++   L++GG+  + Q   L   
Sbjct: 286 LLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSM 345

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D+++ TPGRI+DH  N   + + ++ IL++DEADR+L++GF   IQ +  + P  RQT+
Sbjct: 346 PDIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCPRRRQTM 405

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVN----TPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           LFSATMT+E+ ++    L  P R+E +     P++  E +     A  A  +++  LL  
Sbjct: 406 LFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREA--NQEAVLLAL 463

Query: 238 LLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L+   T K+  IIF   K +   L       G     +HGN+ Q  R++ L  FK+  +
Sbjct: 464 CLK---TFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQEV 520

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             ++A+D+AARG+DI  V  V NF  P  A  Y+HR+GRT RAGR G A T V  +D   
Sbjct: 521 DFLIATDVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSL 580

Query: 357 IDAIEK 362
           + AI K
Sbjct: 581 LKAIAK 586


>gi|291240646|ref|XP_002740231.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked-like
           [Saccoglossus kowalevskii]
          Length = 694

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 153/452 (33%), Positives = 244/452 (53%), Gaps = 31/452 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D+ L   +   + ++ Y +PTP+Q   +P++  + D+   AQTG+GKTA+F+LP+L+
Sbjct: 231 EFSDIDLGEIIQSNIKNSTYARPTPVQKYALPIIRLKRDLMACAQTGSGKTAAFLLPILS 290

Query: 62  -ILEKGRARV---------RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
            I E G  ++           P  L+L PTRELA+Q+ D   K+    ++   ++ GG  
Sbjct: 291 QIYENGPGKIPESRYARRKHFPLGLVLAPTRELASQIYDEARKFSYRSHVRPCVVYGGAD 350

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q ++L+RG  +L+ TPGR++D   RGK+ ++ I+ +V+DEADRMLDMGF P I+ I 
Sbjct: 351 VGGQMRELDRGCHLLVATPGRLVDMMERGKIGLDQIKWVVLDEADRMLDMGFEPQIRRIV 410

Query: 172 S--LVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
               +P T  RQ L+FSAT   E+Q ++ +FL N   + V    ST+  I    V  +  
Sbjct: 411 EQDTMPKTGERQMLMFSATFPKEIQILARDFLDNYIFLAVGRVGSTSVNITQKVV--WVD 468

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
            + K + L  LL +  +    ++F   KK   +L   L + G    +IHG+  QR R + 
Sbjct: 469 ENDKRSFLLDLLSATGSDSLTLVFVETKKGADSLEDFLYRDGHRATSIHGDRSQREREEA 528

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L +F+ G   ++VA+ +AARGLDIP+V HV NFD+P+  E Y+HRIGRTGR G  G A +
Sbjct: 529 LRSFRTGQTPILVATAVAARGLDIPNVKHVINFDMPSDIEEYVHRIGRTGRVGNLGLATS 588

Query: 348 LVAKEDIKHI-DAIEKLIEKKVD---WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
               ++   + D +E ++E K +   W    L S+       +  Q    R+  P  +  
Sbjct: 589 FFNDKNRNVVRDLLELIMETKQEVPSW----LESM-----AYEAKQSGGGRRGAPRNRYY 639

Query: 404 TGFDRR--KKNYSSQKSHIPLKESEKISKLQQ 433
            GF  R  ++    + S  P+  +   +  QQ
Sbjct: 640 GGFGSRDYRQGNRGRGSGTPVYGNAAFTGYQQ 671


>gi|238897336|ref|YP_002923013.1| ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259585614|sp|C4K8M8|RHLB_HAMD5 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|229465091|gb|ACQ66865.1| ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 422

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 139/365 (38%), Positives = 210/365 (57%), Gaps = 9/365 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P V+ A+ + G+   TPIQ  + P+ L   DV   AQTGTGKT +F+  +   
Sbjct: 11  FSDFALHPLVIKAIENQGFYHCTPIQALSFPITLAGRDVAAQAQTGTGKTLAFLASVFNY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +   PR LI+ PTRELA Q+  + E   +  +L + L  GG  ++ Q K 
Sbjct: 71  LLTNAADETRQCEQPRALIMVPTRELAIQIYTDAETLSQFTSLKMGLAYGGDGYDKQLKI 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
           LE G D+LI TPGRI+D+  +  + +N ++++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTPGRIIDYAKQNFIHLNALQVIVLDEADRMYDLGFIKDIRWLFRRMPPAE 190

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R  +LFSAT++  ++++S   + +P+ IEV         I+      Y     K  LLQ
Sbjct: 191 KRLNMLFSATLSYRVRELSFEQMNHPEYIEVEPLQKIGSQIQEELF--YPSNEDKMRLLQ 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ ++     IIF N K+   ++   L   G  V  + G++ QR R++IL +F +G +
Sbjct: 249 TLIE-EEWPDRCIIFANTKQRCEDIWGHLVADGHRVGLLTGDVAQRKRIQILDDFSKGYL 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL IP V HVFN+D+P   E+YIHRIGRTGRAG  G + +L  +    H
Sbjct: 308 DILVATDVAARGLHIPKVTHVFNYDLPENVEDYIHRIGRTGRAGEKGYSISLACEAFASH 367

Query: 357 IDAIE 361
           +  IE
Sbjct: 368 LSTIE 372


>gi|257457389|ref|ZP_05622560.1| DEAD/DEAH box helicase [Treponema vincentii ATCC 35580]
 gi|257445311|gb|EEV20383.1| DEAD/DEAH box helicase [Treponema vincentii ATCC 35580]
          Length = 646

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 146/411 (35%), Positives = 225/411 (54%), Gaps = 33/411 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59
           + F DLGL   V+ AV   G+ +PTPIQ+  IP +L    +V   A+TGTGKTA++ LP+
Sbjct: 18  ISFRDLGLDESVLNAVAAKGFEEPTPIQVLAIPRLLNGDANVIAKARTGTGKTAAYGLPL 77

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  L + R +   PR L+L PTRELA QVA   E + +  +  +  + GG     Q + L
Sbjct: 78  VQELREPREK---PRALVLVPTRELALQVASEIESFKEGTHPRITTVYGGASIVEQLRNL 134

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++  TPGR++DH  RG L +++IE  ++DEAD ML+MGFI  I+ I        +
Sbjct: 135 KRGCEIVAGTPGRVIDHLERGSLNLDSIEYFILDEADEMLNMGFIEDIETIFKKANPDSR 194

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  ++ K++ +F+   + +E           E  F     +  K  AL++ + 
Sbjct: 195 VLMFSATMPKQILKIAADFMGEYEIVEEEASEEPLPLTEQFFWMVREE-DKSEALVRLI- 252

Query: 240 QSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              DT +N  G++FC  K +   +   L+++ +   A+HG+I Q  R KILS F+ G  +
Sbjct: 253 ---DTAENFYGLVFCQTKVDADAVAKELDERHYEAAALHGDIPQGQREKILSRFRAGKTR 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  + HV N+ +P     Y HRIGRTGRAG  G A + +   + + I
Sbjct: 310 ILVATDVAARGIDIEGITHVVNYSIPYDGPTYTHRIGRTGRAGAKGTAVSFIRPNERRRI 369

Query: 358 D----------------AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           D                +IEK++ +K D L  DL        ++D  Q  H
Sbjct: 370 DYLRRHARGELLEGKIPSIEKVLAQKQDRLFSDLR------RQLDTVQAEH 414


>gi|154504732|ref|ZP_02041470.1| hypothetical protein RUMGNA_02239 [Ruminococcus gnavus ATCC 29149]
 gi|153794906|gb|EDN77326.1| hypothetical protein RUMGNA_02239 [Ruminococcus gnavus ATCC 29149]
          Length = 550

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 133/360 (36%), Positives = 214/360 (59%), Gaps = 7/360 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P+++ AV   G+ + +PIQ K IP+++   DV G AQTGTGKTA+F +P+L   EK   +
Sbjct: 36  PEILKAVKHMGFEEASPIQSKAIPVIMSGKDVIGQAQTGTGKTAAFGIPLL---EKIDPK 92

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLERGADVLIC 128
            +  + ++L PTRELA QVA+      K  + + V  + GG     Q + L+ G  ++I 
Sbjct: 93  NKKLQAIVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSLKSGTQLVIG 152

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR++DH  R  + M+++  +V+DEAD ML+MGF   I+ I   +P   QT+LFSATM 
Sbjct: 153 TPGRVMDHMRRKTMKMDHVHTIVLDEADEMLNMGFREDIETILEGIPQEHQTVLFSATMP 212

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
             + ++++ F  N + ++V     T   IE  +     +   K  +L +LL    T K  
Sbjct: 213 KAILEITKQFQTNAELVKVTKKELTVPNIEQFYYEVKPK--NKEEVLSRLLDIY-TPKLS 269

Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           ++FCN KK V  L + L  +G+    +HG++ Q  R +++  F+ G   ++V +D+AARG
Sbjct: 270 VVFCNTKKQVDLLVNGLLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTDILVCTDVAARG 329

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           +D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G++F+ V+  ++  +  I++  + K+
Sbjct: 330 IDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVSGREVYKLKEIQRYCKTKI 389


>gi|152972774|ref|YP_001337920.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|262040904|ref|ZP_06014130.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330012120|ref|ZP_08307282.1| ATP-dependent RNA helicase RhlB [Klebsiella sp. MS 92-3]
 gi|189040033|sp|A6TGG9|RHLB_KLEP7 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|150957623|gb|ABR79653.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|259041793|gb|EEW42838.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328533935|gb|EGF60594.1| ATP-dependent RNA helicase RhlB [Klebsiella sp. MS 92-3]
          Length = 421

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 212/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P V+ A+   G+   TPIQ   +PL L+  DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPAVIEALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAT 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q LL+ ++     I+F N K    ++   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLLE-EEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|261340877|ref|ZP_05968735.1| ATP-dependent RNA helicase SrmB [Enterobacter cancerogenus ATCC
           35316]
 gi|288317308|gb|EFC56246.1| ATP-dependent RNA helicase SrmB [Enterobacter cancerogenus ATCC
           35316]
          Length = 442

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 144/388 (37%), Positives = 222/388 (57%), Gaps = 8/388 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ A+   G+ +PT IQ   IP  L+  DV G A TGTGKTA+++LP+L  
Sbjct: 6   FSELELDESLLNALESKGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPVLQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVAD+  +   N +L +A + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAMQVADHARELAANTHLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          +E L++DEADRMLDMGF   I++I     +  QT+
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRNQTM 185

Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVN-TPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LFSAT+  D ++  +E  L++P  +EV+ TPS+      H +         K  LL+QLL
Sbjct: 186 LFSATLEGDAIKDFAERLLEDP--VEVSATPSTRERKKIHQWYYRADNLEHKIELLKQLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +D  +  I+F  +++ V  L   L   G + C + G + Q  R + +    +G + ++
Sbjct: 244 KQEDATRT-IVFVRKRERVHELAEILRNAGINNCYLEGEMAQVKRTEGIKRLTDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIPDV HV NFD+P   + Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGIAISLVEAHDHLLLQK 362

Query: 360 IEKLIEK--KVDWLNGDLSSLNPPLEKI 385
           I + +++  K   ++G   +   P EK+
Sbjct: 363 IGRYVDEPLKSRVIDGLRPTTRAPSEKM 390


>gi|153000172|ref|YP_001365853.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|160874799|ref|YP_001554115.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|151364790|gb|ABS07790.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|160860321|gb|ABX48855.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315267037|gb|ADT93890.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 451

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 208/370 (56%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L  +++ ++   G  +PT IQ + +P+ L   D+   ++TG+GKT +F+LP L
Sbjct: 1   MQFTDFSLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   R+   R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRVISTRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            +    ++ TPGRI DH  +  L +N +E+LV+DEADRMLD+GF P ++ I       R 
Sbjct: 121 AKEPHFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAADHKRR 180

Query: 179 QTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+  DE+  ++   L+NP  + +    S    I +  F+  +  +  K ALL 
Sbjct: 181 QTLMFSATLDHDEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDH--KEALLA 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL+ + T K  IIF   + +   L   L  QGF+  A+ G++ Q +R +I+  F  G  
Sbjct: 239 RLLKDE-THKQVIIFTATRPDTERLAAKLTAQGFATAALSGDLKQAARNQIMDQFARGQQ 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +
Sbjct: 298 QVLVTTDVASRGLDLLNVSLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDN 357

Query: 357 IDAIEKLIEK 366
              ++  + K
Sbjct: 358 FKKVQVFLRK 367


>gi|163803377|ref|ZP_02197253.1| ATP-dependent RNA helicase SrmB [Vibrio sp. AND4]
 gi|159172839|gb|EDP57681.1| ATP-dependent RNA helicase SrmB [Vibrio sp. AND4]
          Length = 407

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 211/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L L   ++ A+   GY +PT +Q + IP  L   D+   A TGTGKTA+FVLP L  
Sbjct: 5   FAELDLDQNLLEAIEQMGYERPTNVQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQY 64

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+    R   P R LIL PTRELA QVAD      KN  L +  + GG+ ++     L  
Sbjct: 65  LQDFPRRKPGPARILILTPTRELAMQVADQARAMAKNTKLNIFTITGGVQYQEHADILAT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+ ++ +  +     IE L++DEADRMLDMGF P +  +++   + +QTL
Sbjct: 125 TQDIVVATPGRLREYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTL 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLL 239
           LFSAT+  + ++  + + L  P +I+  +P    + I   +  A  A++  K ALL+ ++
Sbjct: 185 LFSATLEGKGVEGFTADLLNEPAKIDAKSPLRERKKIAQWYHRADDAEH--KLALLKHII 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  I+F   ++ +  L   LE        I G + Q  R   +S F+EG + ++
Sbjct: 243 TEQ--AERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFREGAVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A ++V   D   ++ 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMLER 360

Query: 360 IEKLIEKKV 368
           + + +++ +
Sbjct: 361 VARYVKEDI 369


>gi|319788359|ref|YP_004147834.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466871|gb|ADV28603.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 579

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 221/373 (59%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F+   L P+++  +  AG+ + TPIQ  T+P+ L+  DV G AQTGTGKT +F++     
Sbjct: 12  FSSFDLHPELLAGLESAGFTRCTPIQALTLPVALRGGDVAGQAQTGTGKTLAFLVAVMNR 71

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT       +   PR LIL PTRELA Q+  +  K+G    L  AL+ GG+ ++ Q + 
Sbjct: 72  LLTRPALAERKPEDPRALILAPTRELAIQIHKDAVKFGSQLGLRFALVYGGVDYDKQREL 131

Query: 119 LERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           L++G DV+I TPGR++D+  + K++ ++  E+ V+DEADRM D+GFI  I+ +   +P  
Sbjct: 132 LQQGVDVIIATPGRLIDYVKQHKVVSLHACEMCVLDEADRMFDLGFIKDIRFLLRRMPVR 191

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT++  + +++   +  P+++ V T + TA  +       Y    ++   L
Sbjct: 192 TERQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRL---YYPSDEEKLPL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L S+      ++F N K  V  +  +LEK G+ V  + G++ Q+ R  +L+ F++G 
Sbjct: 249 LLGLLSRSEGARTMVFVNTKVFVERVARALEKAGYRVGVLSGDVPQKKRETLLNRFQKGQ 308

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  + +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 309 LEILVATDVAARGLHIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 368

Query: 356 HIDAIEKLIEKKV 368
            +  IE  IE+K+
Sbjct: 369 SLPDIEAYIEQKI 381


>gi|50838814|ref|NP_001002869.1| probable ATP-dependent RNA helicase DDX27 [Danio rerio]
 gi|49618925|gb|AAT68047.1| DEAD box polypeptide 27 [Danio rerio]
          Length = 776

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 138/365 (37%), Positives = 213/365 (58%), Gaps = 5/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   +P+ L   D+C  A TGTGKTA+F+LP+L
Sbjct: 201 LTFHDMNLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKDICACAATGTGKTAAFMLPVL 260

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L       ++ R L+L PTREL  QV     +  +   ++  L +GG+  ++Q   L 
Sbjct: 261 ERLIYKPRETQVTRVLVLVPTRELGIQVHTVARQLAQFTTISTCLAVGGLDLKSQEAALR 320

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            G DVLI TPGR++DH  N     ++ IEIL++DEADRMLD  F   ++ I  +  + RQ
Sbjct: 321 AGPDVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEIIRMCAYQRQ 380

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQL 238
           T+LFSATM++E++ ++   L+ P RI VN+ +  A  +   FV     +   + A++  L
Sbjct: 381 TMLFSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQEFVRIRPNKEGDREAIVAAL 440

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEK-QGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L    T ++ ++   Q K   +  H L    G  V  +HGN+ Q  R++ L  FK+  I 
Sbjct: 441 LTR--TFQDHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRRFKDEQID 498

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAG+ G++ +LV + + K +
Sbjct: 499 ILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETERKML 558

Query: 358 DAIEK 362
             I K
Sbjct: 559 KEIVK 563


>gi|325970668|ref|YP_004246859.1| DEAD/DEAH box helicase [Spirochaeta sp. Buddy]
 gi|324025906|gb|ADY12665.1| DEAD/DEAH box helicase domain protein [Spirochaeta sp. Buddy]
          Length = 546

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 132/372 (35%), Positives = 219/372 (58%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +V+  +  AG+   T +Q K +P+ L   DV   ++TG+GKTA +VL +L
Sbjct: 1   MKFIELPLSEQVLKGIEAAGFTDCTEVQEKVLPISLSHRDVMAQSKTGSGKTAVYVLTIL 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
            + +E        P+ LI+ PTRELA Q+ ++  K     + ++V    GG+ +  Q++ 
Sbjct: 61  QSFVEAQNQGKSKPKALIVAPTRELAVQIEEDTLKLASGMDDVSVGCFFGGVGYGKQDEI 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
           LE+G D+ +CTPGRILD+    K+     +I ++DEADR+ DMGF P IQ + SL+    
Sbjct: 121 LEKGCDIFVCTPGRILDYQKMHKIDFRQFDIFIVDEADRLFDMGFYPDIQKMFSLLRACT 180

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT+  +++ ++ +F+  P  +EV     T + I       +    +K  L  
Sbjct: 181 DRQTMLFSATLGTKVRNLAWSFMNEPVELEVQPEEITVKAITQELF--HISKDQKFGLFL 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++ ++  +N +IF N K   + +   L   G+    + G++ Q  R++ +   K+G I
Sbjct: 239 KLMKKENP-ENCLIFTNTKARCIEVAKRLSLNGYPTKYLMGDLPQTKRLQTIERMKDGKI 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGL I D+  V N+D+P+  E+Y+HRIGRT RAG+ GK+ TL  +E + +
Sbjct: 298 KFLVATDVAARGLQIDDLQLVVNYDIPDDFESYVHRIGRTARAGKSGKSITLADEEYVFN 357

Query: 357 IDAIEKLIEKKV 368
           ++ IE  I+ K+
Sbjct: 358 LEPIENYIQMKI 369


>gi|302812625|ref|XP_002987999.1| hypothetical protein SELMODRAFT_269342 [Selaginella moellendorffii]
 gi|300144105|gb|EFJ10791.1| hypothetical protein SELMODRAFT_269342 [Selaginella moellendorffii]
          Length = 505

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 134/387 (34%), Positives = 210/387 (54%), Gaps = 21/387 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA+      V+  VL AG+ +PT IQ +  P+ L+  D+ G+A+TG+GKT +++LP +  
Sbjct: 87  FAEASFPDYVLQEVLKAGFKEPTAIQAQGWPMALKGRDLVGLAETGSGKTLAYLLPAIVH 146

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L  G      P  L+L PTRELA Q+     K+G +  +    + GG P   Q 
Sbjct: 147 VNAQPYLAPGDG----PIVLVLAPTRELAVQIQQESAKFGSSSKIKSTCIYGGAPKGPQI 202

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+RG +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 203 RDLQRGVEIVIATPGRLIDMLEGRHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRP 262

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS-----STAETIEHCFVATYAQYSKK 231
            RQTL +SAT   ++++++  FL +P ++ + + S     S A+ +E   V  Y +Y K 
Sbjct: 263 DRQTLYWSATWPKDVEQLANQFLHDPYKVTIGSSSLKANHSIAQHVE--VVNDYEKYQKL 320

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL + +     +    IF   K+    +   L  +G+   +IHG+  Q  R  +LS F
Sbjct: 321 IKLLDEFMDGGKIL----IFMETKRGCDQVTKQLRMEGWPALSIHGDKSQAERDWVLSEF 376

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   +M A+D+AARGLD+ D+ +V N+D P   E+Y+HRIGRTGRAG  G A+T    
Sbjct: 377 KTGKSPIMTATDVAARGLDVKDIRYVINYDFPGSCEDYVHRIGRTGRAGAKGTAYTFFTV 436

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            + KH   +  ++ +    +  +L S+
Sbjct: 437 SNAKHARELVSILSEAGQRITPELQSM 463


>gi|66357446|ref|XP_625901.1| Rrp3p, eIF4A-1-family RNA SFII helicase (DEXDc+HELICc)
           [Cryptosporidium parvum Iowa II]
 gi|46226956|gb|EAK87922.1| Rrp3p, eIF4A-1-family RNA SFII helicase (DEXDc+HELICc)
           [Cryptosporidium parvum Iowa II]
          Length = 446

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 136/370 (36%), Positives = 213/370 (57%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+  ++  A    G+  PT IQ KTIP+ L+  D+ G+A+TG+GKT SF++P+L  
Sbjct: 35  FASLGVCKELCIACESLGWKTPTEIQKKTIPVALEGRDIIGLAETGSGKTGSFIIPILQR 94

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +  +     +IL PTREL  Q+++ F  +G   +L +A L+GG+    Q+  L + 
Sbjct: 95  LLDDQVPMY---AVILAPTRELCVQISEQFSAFGSLISLKIATLVGGLDMVMQSLSLAKK 151

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++ +PGR++DH    K   +  I+ LV+DEADR+L M F   +  I    P  R T 
Sbjct: 152 PHIIVASPGRLVDHLENTKGFNIGGIKFLVMDEADRLLSMDFEIALNKIVESSPRNRTTY 211

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLL 239
           LFSATMT ++ K+ +  L NP +I VNT   TA  +   + F+    ++S    +LQ L 
Sbjct: 212 LFSATMTTKVAKLQKISLSNPIKICVNTKYDTAANLMQYYMFIPFKYKWSYFIGMLQNLG 271

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q       GIIFCN   N        ++ GF+  ++HG + Q  R+  L+ FK    +L+
Sbjct: 272 Q-----YTGIIFCNTCINCRRGDLLAKELGFNSISLHGRMSQSQRLSALNLFKGKQKRLL 326

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
             +++ +RGLDIP V  V NFD+P  +++Y+HR+GRT RAGR G+A ++V + D++    
Sbjct: 327 FTTEVGSRGLDIPHVDFVINFDIPTSSKDYVHRVGRTARAGRSGRAISMVTQYDVETFQR 386

Query: 360 IEKLIEKKVD 369
           IE  + +K+D
Sbjct: 387 IEFALNRKLD 396


>gi|326911972|ref|XP_003202329.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like
           [Meleagris gallopavo]
          Length = 645

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 214/378 (56%), Gaps = 19/378 (5%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEK 65
           V+ A++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        LE+
Sbjct: 91  VMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER 150

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
           G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG ++
Sbjct: 151 GDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEI 206

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
            I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL++SA
Sbjct: 207 CIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 266

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQLLQ 240
           T   E+++++E+FLQ+  +I V     +A     + ++ C  +   +  K   L+++++ 
Sbjct: 267 TWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESE--KDHKLIQLMEEIMA 324

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   +++
Sbjct: 325 EKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILI 382

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    +
Sbjct: 383 ATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQAREL 442

Query: 361 EKLIEKKVDWLNGDLSSL 378
            K++E+    +N  L  L
Sbjct: 443 IKVLEEANQAINPKLMQL 460


>gi|156064127|ref|XP_001597985.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|160380609|sp|A7E449|DBP2_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp2
 gi|154690933|gb|EDN90671.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 572

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 209/373 (56%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+  PTPIQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 151 FDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 210

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 211 INAQPLLAPGDG----PIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGGQI 266

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L +G +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 267 RDLAKGVEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQIRP 326

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT ++SAT   E++ ++ ++L +  ++ + +   +A       V   +++ K+  + +
Sbjct: 327 DRQTCMWSATWPKEVRALASDYLNDFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTK 386

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L +  +   N I IF   K+   ++   L + G+   +IHG+  Q  R  +L+ FK G 
Sbjct: 387 HLEKIMEDKDNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 446

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+A+RG+D+ ++ HVFN+D PN +E+YIHRIGRTGRAG+ G A TL   ++ K
Sbjct: 447 SPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITLFTTDNQK 506

Query: 356 HI-DAIEKLIEKK 367
              D +  L E K
Sbjct: 507 QARDLVNVLTEAK 519


>gi|160380652|sp|A7A0P8|DRS1_YEAS7 RecName: Full=ATP-dependent RNA helicase DRS1; AltName:
           Full=Deficiency of ribosomal subunits protein 1
 gi|151941161|gb|EDN59539.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|190406035|gb|EDV09302.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
 gi|207343227|gb|EDZ70754.1| YLL008Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 754

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 147/407 (36%), Positives = 227/407 (55%), Gaps = 23/407 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L LS  V+  +   GYVKP+PIQ  TIP+ L   D+   A TG+GKTA+F++P++ 
Sbjct: 234 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L    A++   R ++L PTRELA QVAD  ++  +  + +T  L +GG+    Q + L+
Sbjct: 294 RLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLK 353

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D++I TPGR +DH  N     ++++EILV+DEADRML+ GF   +  I  L+P  RQ
Sbjct: 354 SRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQ 413

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  +++ +    L+ P RI ++ P   A  +   FV    +   K ALL  L+
Sbjct: 414 NLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLI 473

Query: 240 QSQD--TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  D    K  ++F  +K+    L   +   G SV  +HG++ Q  R+  ++ FK   + 
Sbjct: 474 RKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVP 533

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---- 353
           +++ +DLA+RGLDIP +  V N+D+P   E Y+HR+GRT RAGR G++ T V +      
Sbjct: 534 VLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 593

Query: 354 -----IKHIDAIEKLIEKK-----VDWL-----NGDLSSLNPPLEKI 385
                IK ++  + L + K     VDW+     N  + S+N  +E I
Sbjct: 594 IVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMNDTIEDI 640


>gi|6323021|ref|NP_013093.1| Drs1p [Saccharomyces cerevisiae S288c]
 gi|1706521|sp|P32892|DRS1_YEAST RecName: Full=ATP-dependent RNA helicase DRS1; AltName:
           Full=Deficiency of ribosomal subunits protein 1
 gi|1360171|emb|CAA97452.1| DRS1 [Saccharomyces cerevisiae]
 gi|1495215|emb|CAA62783.1| L1345/DRS1 protein [Saccharomyces cerevisiae]
 gi|285813414|tpg|DAA09310.1| TPA: Drs1p [Saccharomyces cerevisiae S288c]
          Length = 752

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 147/407 (36%), Positives = 227/407 (55%), Gaps = 23/407 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L LS  V+  +   GYVKP+PIQ  TIP+ L   D+   A TG+GKTA+F++P++ 
Sbjct: 232 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 291

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L    A++   R ++L PTRELA QVAD  ++  +  + +T  L +GG+    Q + L+
Sbjct: 292 RLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLK 351

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D++I TPGR +DH  N     ++++EILV+DEADRML+ GF   +  I  L+P  RQ
Sbjct: 352 SRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQ 411

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  +++ +    L+ P RI ++ P   A  +   FV    +   K ALL  L+
Sbjct: 412 NLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLI 471

Query: 240 QSQD--TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  D    K  ++F  +K+    L   +   G SV  +HG++ Q  R+  ++ FK   + 
Sbjct: 472 RKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVP 531

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---- 353
           +++ +DLA+RGLDIP +  V N+D+P   E Y+HR+GRT RAGR G++ T V +      
Sbjct: 532 VLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 591

Query: 354 -----IKHIDAIEKLIEKK-----VDWL-----NGDLSSLNPPLEKI 385
                IK ++  + L + K     VDW+     N  + S+N  +E I
Sbjct: 592 IVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMNDTIEDI 638


>gi|150017632|ref|YP_001309886.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149904097|gb|ABR34930.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 481

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 133/402 (33%), Positives = 233/402 (57%), Gaps = 16/402 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  LS +++ A+    + + T +Q + IP+ L+  D+   ++TG+GKTAS+ +P+  
Sbjct: 5   NFNDYKLSSELLKAISMLNFKELTKVQEQVIPIALEEKDIVVKSKTGSGKTASYAIPICQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    +   P+ L++ PTRELA QV ++F   G+   +  A + G   F  Q K+L++
Sbjct: 65  LVDWEENK---PQALVITPTRELAIQVKEDFFNIGRFKRIKAAAIYGKSSFYDQEKELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI+DH  +G   ++ I+ L+IDEAD ML+MGF+  I+ I   +   R T+
Sbjct: 122 KTHIVVGTPGRIIDHIEKGTFDLSKIKYLIIDEADEMLNMGFVEQIETIIKSLSKERVTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL--L 239
           L SATM  +++ +   ++++P  IE+   +  A+ I  C          K  LL+ +  L
Sbjct: 182 LLSATMPKDIETLCNKYMKDPIHIEIEEQNKAADNI--CQERYNVNELNKIDLLRDITIL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++ D+    +IFCN K+ V  +   L K  +    IHG ++Q  R+++++NFK G  + +
Sbjct: 240 ENPDSC---MIFCNTKQKVDEVYKELAKLQYDCRKIHGGMEQSDRLRVMNNFKLGYFRYL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI ++ HV N+D+P   E+Y+HRIGRTGRAG+ G+A T V + + K ++ 
Sbjct: 297 IATDVAARGIDIDNITHVINYDIPEDKESYVHRIGRTGRAGKMGRAITFVTQNESKFLND 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           I + I K++           P +E ++  +   A K N  P+
Sbjct: 357 IHEYIGKEIPL------KERPKVETVNNLKEEFALKMNTRPE 392


>gi|154271069|ref|XP_001536388.1| hypothetical protein HCAG_08709 [Ajellomyces capsulatus NAm1]
 gi|160380608|sp|A6RGE3|DBP2_AJECN RecName: Full=ATP-dependent RNA helicase DBP2
 gi|150409611|gb|EDN05055.1| hypothetical protein HCAG_08709 [Ajellomyces capsulatus NAm1]
          Length = 542

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 211/374 (56%), Gaps = 13/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ +PT IQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 127 FDEAGFPQYVMSEVKAQGFARPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 186

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 187 INAQPLLAPGDG----PIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQI 242

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 243 RDLTRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 302

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT ++SAT   ++++++++FL +  ++ + +   +A       V   +++ K+  + +
Sbjct: 303 DRQTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAK 362

Query: 237 QLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            L +  +  K+   +IF   K+   ++   L + G+   +IHG+  Q  R  +L+ FK G
Sbjct: 363 HLDRIMEANKHSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTG 422

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A TL   ++ 
Sbjct: 423 KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNA 482

Query: 355 KHI-DAIEKLIEKK 367
           K   D +  L E K
Sbjct: 483 KQARDLVAILSESK 496


>gi|323508819|dbj|BAJ77303.1| cgd4_3180 [Cryptosporidium parvum]
 gi|323510507|dbj|BAJ78147.1| cgd4_3180 [Cryptosporidium parvum]
          Length = 441

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 136/370 (36%), Positives = 213/370 (57%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+  ++  A    G+  PT IQ KTIP+ L+  D+ G+A+TG+GKT SF++P+L  
Sbjct: 30  FASLGVCKELCIACESLGWKTPTEIQKKTIPVALEGRDIIGLAETGSGKTGSFIIPILQR 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +  +     +IL PTREL  Q+++ F  +G   +L +A L+GG+    Q+  L + 
Sbjct: 90  LLDDQVPMY---AVILAPTRELCVQISEQFSAFGSLISLKIATLVGGLDMVMQSLSLAKK 146

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++ +PGR++DH    K   +  I+ LV+DEADR+L M F   +  I    P  R T 
Sbjct: 147 PHIIVASPGRLVDHLENTKGFNIGGIKFLVMDEADRLLSMDFEIALNKIVESSPRNRTTY 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLL 239
           LFSATMT ++ K+ +  L NP +I VNT   TA  +   + F+    ++S    +LQ L 
Sbjct: 207 LFSATMTTKVAKLQKISLSNPIKICVNTKYDTAANLMQYYMFIPFKYKWSYFIGMLQNLG 266

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q       GIIFCN   N        ++ GF+  ++HG + Q  R+  L+ FK    +L+
Sbjct: 267 Q-----YTGIIFCNTCINCRRGDLLAKELGFNSISLHGRMSQSQRLSALNLFKGKQKRLL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
             +++ +RGLDIP V  V NFD+P  +++Y+HR+GRT RAGR G+A ++V + D++    
Sbjct: 322 FTTEVGSRGLDIPHVDFVINFDIPTSSKDYVHRVGRTARAGRSGRAISMVTQYDVETFQR 381

Query: 360 IEKLIEKKVD 369
           IE  + +K+D
Sbjct: 382 IEFALNRKLD 391


>gi|170767442|ref|ZP_02901895.1| ATP-dependent RNA helicase SrmB [Escherichia albertii TW07627]
 gi|170123776|gb|EDS92707.1| ATP-dependent RNA helicase SrmB [Escherichia albertii TW07627]
          Length = 444

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 138/356 (38%), Positives = 206/356 (57%), Gaps = 4/356 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73
           A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  +L+  R +   P
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +      D+++ T GR+
Sbjct: 78  RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQ 192
           L +          +E L++DEADRMLDMGF   I++I     + +QTLLFSAT+  D +Q
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
             +E  L++P  +  N PS+      H +         K ALL  LL+  +  ++ I+F 
Sbjct: 198 DFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFV 255

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
            +++ V  L + L + G + C + G + Q  R + +    EG + ++VA+D+AARG+DIP
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           DV HVFNFD+P   + Y+HRIGRT RAGR G A +LV   D   +  + + IE+ +
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371


>gi|143454043|sp|Q0INC5|RH28_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 28
 gi|77555691|gb|ABA98487.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
           Japonica Group]
 gi|125579336|gb|EAZ20482.1| hypothetical protein OsJ_36091 [Oryza sativa Japonica Group]
 gi|215706455|dbj|BAG93311.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 802

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 146/366 (39%), Positives = 206/366 (56%), Gaps = 11/366 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  ++ A    GY KPTPIQ   IPL L   D+CG A TG+GKTA+F LP+L  
Sbjct: 196 FLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLER 255

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     RV   R LIL PTRELAAQV    EK  +  ++   L++GG+  + Q   L   
Sbjct: 256 LLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSM 315

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D+++ TPGRI+DH  N   + + ++ IL++DEADR+L++GF   IQ +  + P  RQT+
Sbjct: 316 PDIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCPRRRQTM 375

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVN----TPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           LFSATMT+E+ ++    L  P R+E +     P++  E +     A  A  +++  LL  
Sbjct: 376 LFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREA--NQEAVLLAL 433

Query: 238 LLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L+   T K+  IIF   K +   L       G     +HGN+ Q  R++ L  FK+  +
Sbjct: 434 CLK---TFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQEV 490

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             ++A+D+AARG+DI  V  V NF  P  A  Y+HR+GRT RAGR G A T V  +D   
Sbjct: 491 DFLIATDVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSL 550

Query: 357 IDAIEK 362
           + AI K
Sbjct: 551 LKAIAK 556


>gi|262403204|ref|ZP_06079764.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
 gi|262350703|gb|EEY99836.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
          Length = 448

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 141/389 (36%), Positives = 213/389 (54%), Gaps = 12/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   + PR +IL PTRELA QV           + T  ++ GG  F  Q K L
Sbjct: 61  HKSLKTKAFSAKDPRGVILVPTRELAKQVYGELRSMLGGLSYTATVITGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            RG   ++ TPGR+ DH +   L ++ +E LV+DEADRMLD+GF   ++ I +     R 
Sbjct: 121 ARGPRFIVATPGRLADHLDHRSLFLDGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   ++  ++   L +PKRI +   S   + I +H ++  +  +  K ALL 
Sbjct: 181 QTLMFSATLDHADVNDMAMEMLNDPKRIAIGVGSEEHKDITQHFYLCDHLDH--KEALLD 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L   D  +  IIF   + +   L   L K      A+ GN++Q  R  I+  F+    
Sbjct: 239 RILADAD-YRQVIIFTATRADTDRLTEKLNKNNLKAVALSGNLNQTQRNTIMGQFERTVF 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++V +D+A+RGLDIP V HV NFD+P   E Y+HRIGRTGRAG  G A +LV  +D   
Sbjct: 298 KILVTTDVASRGLDIPSVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAMSLVGPKDWDS 357

Query: 357 IDAIEKLIEKKVDW-----LNGDLSSLNP 380
              +E  +++++ +     L G    L P
Sbjct: 358 FKRVEAFLQQEIQFDVMEGLEGKFKGLKP 386


>gi|91206542|sp|Q4PHU9|DBP2_USTMA RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 552

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 133/361 (36%), Positives = 204/361 (56%), Gaps = 14/361 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    ++  +   G+ +P+ IQ +  P+ L   D+  IA+TG+GKT  F LP +  
Sbjct: 132 FDEAGFPDYILSEIKKMGFSEPSAIQSQAWPMALSGRDLVAIAETGSGKTIGFALPAMVH 191

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L+ G      P  LIL PTRELA Q+     ++G +  L    + GG+P   Q 
Sbjct: 192 INAQPLLKPGDG----PIALILAPTRELANQIQVECNRFGGSSRLRTCAVYGGVPKGPQI 247

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+RGA++ I TPGR++D  + GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 248 RDLQRGAEICIATPGRLIDMVDAGKTNLRRVTYLVMDEADRMLDMGFEPQIRKILQQIRP 307

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL+FSAT   E+Q+++ +FL N  ++ + +    A       +    ++ KK  L+ 
Sbjct: 308 DRQTLMFSATWPKEVQRLAGDFLNNYAQVNIGSTELAANHNVKQIIEVCTEFEKKGKLIG 367

Query: 237 QLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            L     + +NG  IIF + K+   +L   L + G+   AIHG+  Q+ R  +L+ FK G
Sbjct: 368 HL--ETISAENGKVIIFTSTKRVADDLTKFLRQDGWPALAIHGDKQQQERDWVLAEFKSG 425

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +MVA+ +A+RGLD+ D+ +V N+D P   E+Y+H+IGRTGRAGR G A+T    E+ 
Sbjct: 426 RSPIMVATAVASRGLDVKDISYVINYDFPTNTEDYVHQIGRTGRAGRTGTAYTYFTPENS 485

Query: 355 K 355
           K
Sbjct: 486 K 486


>gi|256073063|ref|XP_002572852.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238658018|emb|CAZ29084.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 769

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 147/425 (34%), Positives = 237/425 (55%), Gaps = 7/425 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F +L +   ++  +   G+  PTPIQ +  P+ L   DV GIAQTG+GKTASF+LP +
Sbjct: 92  LSFNELNVPDYILSVIAKNGWQLPTPIQSQGWPMALSGRDVVGIAQTGSGKTASFLLPAV 151

Query: 60  LTILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + I+ + R  R   P  LIL PTRELA QV    +++    +L      GG     Q ++
Sbjct: 152 IHIMAQPRLLRNEGPICLILVPTRELAQQVLVVAKEFADAASLRAMCFYGGSAKGTQLRE 211

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +++G ++ I TPGR++D     + L++ +  LV+DEADRMLDMGF P I+ I       R
Sbjct: 212 MQKGGEICIATPGRLIDFIRVQRNLLSRVTYLVLDEADRMLDMGFEPQIRKIIGHTRPDR 271

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+Q ++  FL +  ++ + + S  A       V     +SK+  L++ L
Sbjct: 272 QTLMWSATWPREVQTLAREFLTDYIQVNIGSVSLHANPNITQIVEIMDDWSKEQRLIE-L 330

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S    +  ++F   K+    L +SL ++GF V A+HG   QR R   L+NFK G + +
Sbjct: 331 LTSFGRART-LVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLANFKSGRMNI 389

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RGLDI ++ +V NFD PN+ E+YIHRIGRT R+ + G AFT    ++++   
Sbjct: 390 LVATDVASRGLDIDNIEYVVNFDFPNQTEDYIHRIGRTARSDKTGTAFTFFTHKNVRQAR 449

Query: 359 AIEKLIEKKVDWLNGD---LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +  ++++    ++ +   L+ ++  L K    + N        P + TGF     ++ +
Sbjct: 450 DLIDILDEANQEISAELVQLAGMSNYLRKSSTLKKNPPAFQQKPPGRITGFGNSSSSFPT 509

Query: 416 QKSHI 420
           Q   I
Sbjct: 510 QDIRI 514


>gi|224095173|ref|XP_002195734.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Taeniopygia
           guttata]
          Length = 842

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 214/378 (56%), Gaps = 19/378 (5%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEK 65
           V+ A++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        LE+
Sbjct: 289 VMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER 348

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
           G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG ++
Sbjct: 349 GDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEI 404

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
            I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL++SA
Sbjct: 405 CIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 464

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQLLQ 240
           T   E+++++E+FLQ+  +I V     +A     + ++ C  +   +  K   L+++++ 
Sbjct: 465 TWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESE--KDHKLIQLMEEIMA 522

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   +++
Sbjct: 523 EKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILI 580

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    +
Sbjct: 581 ATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQAREL 640

Query: 361 EKLIEKKVDWLNGDLSSL 378
            K++E+    +N  L  L
Sbjct: 641 IKVLEEANQAINPKLMQL 658


>gi|218199270|gb|EEC81697.1| hypothetical protein OsI_25294 [Oryza sativa Indica Group]
          Length = 639

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 138/383 (36%), Positives = 212/383 (55%), Gaps = 23/383 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++ L   +   +    YVKPTP+Q   IP+ +   D+   AQTG+GKTA+F  P+++ 
Sbjct: 172 FAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISG 231

Query: 63  LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           + + R       +R   P  LIL PTREL+ Q+ +   K+     + V +  GG P   Q
Sbjct: 232 IMRSRPPPRSRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVKVVVAYGGAPITQQ 291

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++LERG ++L+ TPGR++D   R ++ +  I+ L +DEADRMLDMGF P I+ I   + 
Sbjct: 292 LRELERGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMD 351

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQT+LFSAT   E+Q+++ +FL +   + V    S+ + I       +   + K
Sbjct: 352 MPPRGERQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIVQR--VEFVLDADK 409

Query: 232 CALLQQLLQSQDTMKNG--------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + L  LL +Q    NG        ++F   K+    L + L   GF   +IHG+  Q+ 
Sbjct: 410 RSYLMDLLHAQRA--NGTHGKQALTLVFVETKRGADALENWLYNNGFPATSIHGDRTQQE 467

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G
Sbjct: 468 REYALRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSG 527

Query: 344 KAFTLVAKEDIKHIDAIEKLIEK 366
            A     + +      + +L+++
Sbjct: 528 LATAFFNESNTPLARPLSELMQE 550


>gi|331664144|ref|ZP_08365054.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA143]
 gi|331059943|gb|EGI31920.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA143]
          Length = 444

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 138/356 (38%), Positives = 206/356 (57%), Gaps = 4/356 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73
           A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  +L+  R +   P
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +      D+++ T GR+
Sbjct: 78  RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQ 192
           L +          +E L++DEADRMLDMGF   I++I     + +QTLLFSAT+  D +Q
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
             +E  L++P  +  N PS+      H +         K ALL  LL+  +  ++ I+F 
Sbjct: 198 DFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFV 255

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
            +++ V  L + L + G + C + G + Q  R + +    EG + ++VA+D+AARG+DIP
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           DV HVFNFD+P   + Y+HRIGRT RAGR G A +LV   D   +  + + IE+ +
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371


>gi|313764129|gb|EFS35493.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
 gi|314929970|gb|EFS93801.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
 gi|314972830|gb|EFT16927.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
 gi|328753876|gb|EGF67492.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
          Length = 560

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 214/372 (57%), Gaps = 14/372 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L  
Sbjct: 51  FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 110

Query: 63  L----EKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    ++G   +     P+ L++ PTRELA QV+ +           V  + GG+ +E+Q
Sbjct: 111 ITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQ 170

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G DV++ TPGR+LD   R  L ++++ I+V+DEAD MLD+GF+P ++N+    P
Sbjct: 171 IDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTP 230

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYAQYSKKC 232
            +RQT+LFSATM   +  ++ + L+ P  +     +T ++  +T +  +    A    K 
Sbjct: 231 ASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY---QAHPLDKI 287

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            ++ ++LQ+ D  K  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+
Sbjct: 288 EIIGRILQANDVEKV-IIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFR 346

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   
Sbjct: 347 HGEATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWA 406

Query: 353 DIKHIDAIEKLI 364
           D+     I K +
Sbjct: 407 DVTRWKLINKAL 418


>gi|115471073|ref|NP_001059135.1| Os07g0202100 [Oryza sativa Japonica Group]
 gi|75325411|sp|Q6Z4K6|RH52B_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52B; AltName:
           Full=OsPL10b
 gi|34393986|dbj|BAC83834.1| putative DEAD-box RNA helicase DEAD3 [Oryza sativa Japonica Group]
 gi|113610671|dbj|BAF21049.1| Os07g0202100 [Oryza sativa Japonica Group]
 gi|222636630|gb|EEE66762.1| hypothetical protein OsJ_23477 [Oryza sativa Japonica Group]
          Length = 638

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 138/383 (36%), Positives = 212/383 (55%), Gaps = 23/383 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++ L   +   +    YVKPTP+Q   IP+ +   D+   AQTG+GKTA+F  P+++ 
Sbjct: 171 FAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISG 230

Query: 63  LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           + + R       +R   P  LIL PTREL+ Q+ +   K+     + V +  GG P   Q
Sbjct: 231 IMRSRPPPRSRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVKVVVAYGGAPITQQ 290

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++LERG ++L+ TPGR++D   R ++ +  I+ L +DEADRMLDMGF P I+ I   + 
Sbjct: 291 LRELERGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMD 350

Query: 176 FT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQT+LFSAT   E+Q+++ +FL +   + V    S+ + I       +   + K
Sbjct: 351 MPPRGERQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIVQR--VEFVLDADK 408

Query: 232 CALLQQLLQSQDTMKNG--------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + L  LL +Q    NG        ++F   K+    L + L   GF   +IHG+  Q+ 
Sbjct: 409 RSYLMDLLHAQRA--NGTHGKQALTLVFVETKRGADALENWLYNNGFPATSIHGDRTQQE 466

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G
Sbjct: 467 REYALRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSG 526

Query: 344 KAFTLVAKEDIKHIDAIEKLIEK 366
            A     + +      + +L+++
Sbjct: 527 LATAFFNESNTPLARPLSELMQE 549


>gi|86132787|ref|ZP_01051379.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
 gi|85816741|gb|EAQ37927.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
          Length = 454

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 142/370 (38%), Positives = 210/370 (56%), Gaps = 6/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   +  A+ D GY +PTPIQ+  +  V+   DV GIAQTGTGKT +++LP+L
Sbjct: 3   MTFKDLNLDKFLWNALDDMGYTQPTPIQVDALAPVMSGSDVVGIAQTGTGKTFAYLLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   R     PR LIL PTREL  QV +  EK  K  ++ +A + GG     Q   + 
Sbjct: 63  RTLPYSRQE--NPRVLILVPTRELVLQVVNELEKLTKYIDVRIAGVYGGSNINTQKALIA 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TPGR+ D      L + +I+ +VIDE D MLD+GF P + NI  ++P  RQ 
Sbjct: 121 QGQDIVVATPGRLYDLAVSRVLQLKSIQKVVIDEVDVMLDLGFRPQLMNIFDILPKRRQH 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSATMT+++  + +++   PK I+V    +  E I+         Y+K   +L++L  
Sbjct: 181 IMFSATMTEDVDALIKDYFNKPKFIKVARSGTPLENIKQVGYKIPNFYTKVNFILEELAS 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGF--SVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++   K  ++F   K+    L   LE + F   V  IH N  Q  R+  ++ F EG +++
Sbjct: 241 AKAYPKT-LLFVRDKRMADRLYLKLE-EAFPGQVDLIHSNKTQNYRINSINAFSEGKVRM 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+ ARGLDI D+ HV N + P   ENY+HRIGRTGRA + G +  L    +   ++
Sbjct: 299 MVATDVMARGLDIDDITHVINVNTPRFPENYLHRIGRTGRAQKEGTSIVLSTPAEDAFLE 358

Query: 359 AIEKLIEKKV 368
            IE L+  KV
Sbjct: 359 EIEALMGVKV 368


>gi|313246316|emb|CBY35237.1| unnamed protein product [Oikopleura dioica]
          Length = 653

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 141/372 (37%), Positives = 208/372 (55%), Gaps = 12/372 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF    L P +   V  A Y  PTP+Q   +P++    D+   AQTG+GKTA+F++PML+
Sbjct: 198 DFVSAELGPIITENVKLAHYTVPTPVQKYAVPIIHAGRDIMSCAQTGSGKTAAFLMPMLS 257

Query: 62  -------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   + + ++R   P  L+L PTREL  Q+     K+     +   ++ GG     
Sbjct: 258 NIFHNPGKIPRHQSRKAYPLALVLSPTRELTNQIYQEALKFAYRSKVRPCVIYGGADVGE 317

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L RG  +L+ TPGR+ D   RGK+ +     L +DEADRMLDMGF P I+ I   V
Sbjct: 318 QLRDLSRGCHLLVATPGRLADFLERGKVGLEFCRFLCLDEADRMLDMGFEPQIRRIIEKV 377

Query: 175 --PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
             P  RQTL+FSAT   ++Q ++ +FL+N   + V    ST+  I   F   Y Q ++K 
Sbjct: 378 IFPSDRQTLMFSATFPKQIQALASDFLENYIFLAVGRVGSTSANITQRF--EYVQETEKV 435

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L +LL++   M   I+F   KK    L H L ++G+    IHG+ +Q+ R + +  FK
Sbjct: 436 RKLCELLENGQEMLT-IVFTETKKGADYLDHFLHERGYQSTCIHGDRNQQEREEAVHLFK 494

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+ +AARGLDIP+V HV NFD+P+  + Y+HRIGRTGRAG  G A     ++
Sbjct: 495 SGQTPILVATAVAARGLDIPNVRHVINFDLPSEIDEYVHRIGRTGRAGNTGWATAFYNEK 554

Query: 353 DIKHIDAIEKLI 364
           + K  D + +L+
Sbjct: 555 NAKISDDLLQLL 566


>gi|323173106|gb|EFZ58737.1| ATP-dependent RNA helicase srmB [Escherichia coli LT-68]
          Length = 442

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 138/356 (38%), Positives = 206/356 (57%), Gaps = 4/356 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73
           A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  +L+  R +   P
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +      D+++ T GR+
Sbjct: 78  RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQ 192
           L +          +E L++DEADRMLDMGF   I++I     + +QTLLFSAT+  D +Q
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
             +E  L++P  +  N PS+      H +         K ALL  LL+  +  ++ I+F 
Sbjct: 198 DFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFV 255

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
            +++ V  L + L + G + C + G + Q  R + +    EG + ++VA+D+AARG+DIP
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           DV HVFNFD+P   + Y+HRIGRT RAGR G A +LV   D   +  + + IE+ +
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371


>gi|68249023|ref|YP_248135.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 86-028NP]
 gi|68057222|gb|AAX87475.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 86-028NP]
          Length = 439

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 135/383 (35%), Positives = 212/383 (55%), Gaps = 6/383 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP L  
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   P  LIL PTRELA QVA+  E+  +  +L +A + GG+ ++        
Sbjct: 66  LLDYPRRKPGPPCILILTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QTL
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  EL    +E  L +P +++        + I   +    +    K  LL + ++
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   + GI+F  ++++   +  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 245 TEKVTR-GIVFVRRREDAREVSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381
           ++  E+  K   L G      PP
Sbjct: 364 KRYTEEILKARILAGLEPRTKPP 386


>gi|15832696|ref|NP_311469.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           Sakai]
 gi|24113917|ref|NP_708427.1| ATP-dependent RNA helicase SrmB [Shigella flexneri 2a str. 301]
 gi|26248941|ref|NP_754981.1| ATP-dependent RNA helicase SrmB [Escherichia coli CFT073]
 gi|30063977|ref|NP_838148.1| ATP-dependent RNA helicase SrmB [Shigella flexneri 2a str. 2457T]
 gi|74313139|ref|YP_311558.1| ATP-dependent RNA helicase SrmB [Shigella sonnei Ss046]
 gi|91211903|ref|YP_541889.1| ATP-dependent RNA helicase SrmB [Escherichia coli UTI89]
 gi|110642738|ref|YP_670468.1| ATP-dependent RNA helicase SrmB [Escherichia coli 536]
 gi|110806520|ref|YP_690040.1| ATP-dependent RNA helicase SrmB [Shigella flexneri 5 str. 8401]
 gi|117624797|ref|YP_853710.1| ATP-dependent RNA helicase SrmB [Escherichia coli APEC O1]
 gi|157162056|ref|YP_001459374.1| ATP-dependent RNA helicase SrmB [Escherichia coli HS]
 gi|168748352|ref|ZP_02773374.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757760|ref|ZP_02782767.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4401]
 gi|168765031|ref|ZP_02790038.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768681|ref|ZP_02793688.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773496|ref|ZP_02798503.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778555|ref|ZP_02803562.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790377|ref|ZP_02815384.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC869]
 gi|170019141|ref|YP_001724095.1| ATP-dependent RNA helicase SrmB [Escherichia coli ATCC 8739]
 gi|170684258|ref|YP_001744765.1| ATP-dependent RNA helicase SrmB [Escherichia coli SMS-3-5]
 gi|188494838|ref|ZP_03002108.1| ATP-dependent RNA helicase SrmB [Escherichia coli 53638]
 gi|191174027|ref|ZP_03035544.1| ATP-dependent RNA helicase SrmB [Escherichia coli F11]
 gi|193064108|ref|ZP_03045193.1| ATP-dependent RNA helicase SrmB [Escherichia coli E22]
 gi|194429273|ref|ZP_03061800.1| ATP-dependent RNA helicase SrmB [Escherichia coli B171]
 gi|194432156|ref|ZP_03064445.1| ATP-dependent RNA helicase SrmB [Shigella dysenteriae 1012]
 gi|194437565|ref|ZP_03069661.1| ATP-dependent RNA helicase SrmB [Escherichia coli 101-1]
 gi|195936724|ref|ZP_03082106.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4024]
 gi|208805922|ref|ZP_03248259.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813312|ref|ZP_03254641.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820708|ref|ZP_03261028.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397789|ref|YP_002272051.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4115]
 gi|209920055|ref|YP_002294139.1| ATP-dependent RNA helicase SrmB [Escherichia coli SE11]
 gi|215487920|ref|YP_002330351.1| ATP-dependent RNA helicase SrmB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217327593|ref|ZP_03443676.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           TW14588]
 gi|218547896|ref|YP_002381687.1| ATP-dependent RNA helicase SrmB [Escherichia fergusonii ATCC 35469]
 gi|218555158|ref|YP_002388071.1| ATP-dependent RNA helicase SrmB [Escherichia coli IAI1]
 gi|218559497|ref|YP_002392410.1| ATP-dependent RNA helicase SrmB [Escherichia coli S88]
 gi|218696204|ref|YP_002403871.1| ATP-dependent RNA helicase SrmB [Escherichia coli 55989]
 gi|218701090|ref|YP_002408719.1| ATP-dependent RNA helicase SrmB [Escherichia coli IAI39]
 gi|218706079|ref|YP_002413598.1| ATP-dependent RNA helicase SrmB [Escherichia coli UMN026]
 gi|227887612|ref|ZP_04005417.1| ATP-dependent RNA helicase [Escherichia coli 83972]
 gi|237705086|ref|ZP_04535567.1| ATP-dependent RNA helicase SrmB [Escherichia sp. 3_2_53FAA]
 gi|253772524|ref|YP_003035355.1| ATP-dependent RNA helicase SrmB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162551|ref|YP_003045659.1| ATP-dependent RNA helicase SrmB [Escherichia coli B str. REL606]
 gi|254794527|ref|YP_003079364.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017274|ref|ZP_05431139.1| ATP-dependent RNA helicase SrmB [Shigella sp. D9]
 gi|256021737|ref|ZP_05435602.1| ATP-dependent RNA helicase SrmB [Escherichia sp. 4_1_40B]
 gi|260845261|ref|YP_003223039.1| ATP-dependent RNA helicase SrmB [Escherichia coli O103:H2 str.
           12009]
 gi|260856670|ref|YP_003230561.1| ATP-dependent RNA helicase SrmB [Escherichia coli O26:H11 str.
           11368]
 gi|260869263|ref|YP_003235665.1| ATP-dependent RNA helicase SrmB [Escherichia coli O111:H- str.
           11128]
 gi|261222988|ref|ZP_05937269.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259462|ref|ZP_05951995.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283852|ref|YP_003500670.1| ATP-dependent RNA helicase SrmB [Escherichia coli O55:H7 str.
           CB9615]
 gi|293406018|ref|ZP_06650010.1| ATP-dependent RNA helicase SrmB [Escherichia coli FVEC1412]
 gi|293410992|ref|ZP_06654568.1| ATP-dependent RNA helicase SrmB [Escherichia coli B354]
 gi|293415845|ref|ZP_06658488.1| ATP-dependent RNA helicase SrmB [Escherichia coli B185]
 gi|293446931|ref|ZP_06663353.1| ATP-dependent RNA helicase SrmB [Escherichia coli B088]
 gi|298381818|ref|ZP_06991417.1| ATP-dependent RNA helicase SrmB [Escherichia coli FVEC1302]
 gi|300820745|ref|ZP_07100895.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300898309|ref|ZP_07116657.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|300904240|ref|ZP_07122099.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|300920744|ref|ZP_07137150.1| DEAD/DEAH box helicase [Escherichia coli MS 115-1]
 gi|300927702|ref|ZP_07143270.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|300935710|ref|ZP_07150679.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
 gi|300951705|ref|ZP_07165525.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300958783|ref|ZP_07170895.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|300974119|ref|ZP_07172469.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|300982280|ref|ZP_07175991.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|301021938|ref|ZP_07185897.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|301024863|ref|ZP_07188500.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
 gi|301047215|ref|ZP_07194307.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|301302943|ref|ZP_07209071.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|301648340|ref|ZP_07248080.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|306814360|ref|ZP_07448522.1| ATP-dependent RNA helicase SrmB [Escherichia coli NC101]
 gi|307139213|ref|ZP_07498569.1| ATP-dependent RNA helicase SrmB [Escherichia coli H736]
 gi|312965492|ref|ZP_07779724.1| ATP-dependent RNA helicase srmB [Escherichia coli 2362-75]
 gi|312973178|ref|ZP_07787350.1| ATP-dependent RNA helicase srmB [Escherichia coli 1827-70]
 gi|331643200|ref|ZP_08344335.1| ATP-dependent RNA helicase SrmB [Escherichia coli H736]
 gi|331648323|ref|ZP_08349412.1| ATP-dependent RNA helicase SrmB [Escherichia coli M605]
 gi|331654039|ref|ZP_08355040.1| ATP-dependent RNA helicase SrmB [Escherichia coli M718]
 gi|331658721|ref|ZP_08359665.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA206]
 gi|331669327|ref|ZP_08370175.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA271]
 gi|331674026|ref|ZP_08374789.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA280]
 gi|331678573|ref|ZP_08379248.1| ATP-dependent RNA helicase SrmB [Escherichia coli H591]
 gi|331684226|ref|ZP_08384822.1| ATP-dependent RNA helicase SrmB [Escherichia coli H299]
 gi|332278266|ref|ZP_08390679.1| ATP-dependent RNA helicase SrmB [Shigella sp. D9]
 gi|26109347|gb|AAN81549.1|AE016764_231 ATP-dependent RNA helicase srmB [Escherichia coli CFT073]
 gi|13362913|dbj|BAB36865.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. Sakai]
 gi|24053020|gb|AAN44134.1| ATP-dependent RNA helicase [Shigella flexneri 2a str. 301]
 gi|30042233|gb|AAP17958.1| ATP-dependent RNA helicase [Shigella flexneri 2a str. 2457T]
 gi|73856616|gb|AAZ89323.1| ATP-dependent RNA helicase [Shigella sonnei Ss046]
 gi|91073477|gb|ABE08358.1| ATP-dependent RNA helicase [Escherichia coli UTI89]
 gi|110344330|gb|ABG70567.1| ATP-dependent RNA helicase SrmB [Escherichia coli 536]
 gi|110616068|gb|ABF04735.1| ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401]
 gi|115513921|gb|ABJ01996.1| putative transcriptional regulator YfiE [Escherichia coli APEC O1]
 gi|157067736|gb|ABV06991.1| ATP-dependent RNA helicase SrmB [Escherichia coli HS]
 gi|169754069|gb|ACA76768.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
 gi|170521976|gb|ACB20154.1| ATP-dependent RNA helicase SrmB [Escherichia coli SMS-3-5]
 gi|187770668|gb|EDU34512.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017076|gb|EDU55198.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4113]
 gi|188490037|gb|EDU65140.1| ATP-dependent RNA helicase SrmB [Escherichia coli 53638]
 gi|189003613|gb|EDU72599.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355321|gb|EDU73740.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362179|gb|EDU80598.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365096|gb|EDU83512.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370150|gb|EDU88566.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC869]
 gi|190905718|gb|EDV65340.1| ATP-dependent RNA helicase SrmB [Escherichia coli F11]
 gi|192929343|gb|EDV82952.1| ATP-dependent RNA helicase SrmB [Escherichia coli E22]
 gi|194412681|gb|EDX28976.1| ATP-dependent RNA helicase SrmB [Escherichia coli B171]
 gi|194419685|gb|EDX35765.1| ATP-dependent RNA helicase SrmB [Shigella dysenteriae 1012]
 gi|194423371|gb|EDX39362.1| ATP-dependent RNA helicase SrmB [Escherichia coli 101-1]
 gi|208725723|gb|EDZ75324.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734589|gb|EDZ83276.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740831|gb|EDZ88513.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209159189|gb|ACI36622.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4115]
 gi|209762790|gb|ACI79707.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209762792|gb|ACI79708.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209762796|gb|ACI79710.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209913314|dbj|BAG78388.1| ATP-dependent RNA helicase [Escherichia coli SE11]
 gi|215265992|emb|CAS10401.1| ATP-dependent RNA helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|217319960|gb|EEC28385.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           TW14588]
 gi|218352936|emb|CAU98735.1| ATP-dependent RNA helicase [Escherichia coli 55989]
 gi|218355437|emb|CAQ88046.1| ATP-dependent RNA helicase [Escherichia fergusonii ATCC 35469]
 gi|218361926|emb|CAQ99526.1| ATP-dependent RNA helicase [Escherichia coli IAI1]
 gi|218366266|emb|CAR04013.1| ATP-dependent RNA helicase [Escherichia coli S88]
 gi|218371076|emb|CAR18903.1| ATP-dependent RNA helicase [Escherichia coli IAI39]
 gi|218433176|emb|CAR14074.1| ATP-dependent RNA helicase [Escherichia coli UMN026]
 gi|222034281|emb|CAP77022.1| ATP-dependent RNA helicase srmB [Escherichia coli LF82]
 gi|226901452|gb|EEH87711.1| ATP-dependent RNA helicase SrmB [Escherichia sp. 3_2_53FAA]
 gi|227835962|gb|EEJ46428.1| ATP-dependent RNA helicase [Escherichia coli 83972]
 gi|242378176|emb|CAQ32951.1| SrmB, DEAD-box RNA helicase [Escherichia coli BL21(DE3)]
 gi|253323568|gb|ACT28170.1| DEAD/DEAH box helicase domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974452|gb|ACT40123.1| ATP-dependent RNA helicase [Escherichia coli B str. REL606]
 gi|253978619|gb|ACT44289.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
 gi|254593927|gb|ACT73288.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. TW14359]
 gi|257755319|dbj|BAI26821.1| ATP-dependent RNA helicase SrmB [Escherichia coli O26:H11 str.
           11368]
 gi|257760408|dbj|BAI31905.1| ATP-dependent RNA helicase SrmB [Escherichia coli O103:H2 str.
           12009]
 gi|257765619|dbj|BAI37114.1| ATP-dependent RNA helicase SrmB [Escherichia coli O111:H- str.
           11128]
 gi|281179625|dbj|BAI55955.1| ATP-dependent RNA helicase [Escherichia coli SE15]
 gi|281601988|gb|ADA74972.1| ATP-dependent RNA helicase [Shigella flexneri 2002017]
 gi|284922526|emb|CBG35613.1| ATP-dependent RNA helicase [Escherichia coli 042]
 gi|290763725|gb|ADD57686.1| ATP-dependent RNA helicase SrmB [Escherichia coli O55:H7 str.
           CB9615]
 gi|291323761|gb|EFE63189.1| ATP-dependent RNA helicase SrmB [Escherichia coli B088]
 gi|291428226|gb|EFF01253.1| ATP-dependent RNA helicase SrmB [Escherichia coli FVEC1412]
 gi|291433493|gb|EFF06472.1| ATP-dependent RNA helicase SrmB [Escherichia coli B185]
 gi|291471460|gb|EFF13944.1| ATP-dependent RNA helicase SrmB [Escherichia coli B354]
 gi|294490578|gb|ADE89334.1| ATP-dependent RNA helicase SrmB [Escherichia coli IHE3034]
 gi|298279260|gb|EFI20774.1| ATP-dependent RNA helicase SrmB [Escherichia coli FVEC1302]
 gi|299881405|gb|EFI89616.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|300300892|gb|EFJ57277.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|300308942|gb|EFJ63462.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|300314531|gb|EFJ64315.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|300357971|gb|EFJ73841.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|300396394|gb|EFJ79932.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
 gi|300403773|gb|EFJ87311.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|300408834|gb|EFJ92372.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|300412315|gb|EFJ95625.1| DEAD/DEAH box helicase [Escherichia coli MS 115-1]
 gi|300449067|gb|EFK12687.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300459099|gb|EFK22592.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
 gi|300464255|gb|EFK27748.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|300526498|gb|EFK47567.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300841878|gb|EFK69638.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|301073616|gb|EFK88422.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|305851754|gb|EFM52206.1| ATP-dependent RNA helicase SrmB [Escherichia coli NC101]
 gi|307554595|gb|ADN47370.1| ATP-dependent RNA helicase SrmB [Escherichia coli ABU 83972]
 gi|307625875|gb|ADN70179.1| ATP-dependent RNA helicase SrmB [Escherichia coli UM146]
 gi|309702962|emb|CBJ02293.1| ATP-dependent RNA helicase [Escherichia coli ETEC H10407]
 gi|310331773|gb|EFP99008.1| ATP-dependent RNA helicase srmB [Escherichia coli 1827-70]
 gi|312289912|gb|EFR17800.1| ATP-dependent RNA helicase srmB [Escherichia coli 2362-75]
 gi|312947148|gb|ADR27975.1| ATP-dependent RNA helicase SrmB [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313648255|gb|EFS12699.1| ATP-dependent RNA helicase srmB [Shigella flexneri 2a str. 2457T]
 gi|315256604|gb|EFU36572.1| DEAD/DEAH box helicase [Escherichia coli MS 85-1]
 gi|315287992|gb|EFU47394.1| DEAD/DEAH box helicase [Escherichia coli MS 110-3]
 gi|315294533|gb|EFU53881.1| DEAD/DEAH box helicase [Escherichia coli MS 153-1]
 gi|315300543|gb|EFU59772.1| DEAD/DEAH box helicase [Escherichia coli MS 16-3]
 gi|315615838|gb|EFU96470.1| ATP-dependent RNA helicase srmB [Escherichia coli 3431]
 gi|320188917|gb|EFW63576.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC1212]
 gi|320196412|gb|EFW71036.1| ATP-dependent RNA helicase SrmB [Escherichia coli WV_060327]
 gi|320200140|gb|EFW74729.1| ATP-dependent RNA helicase SrmB [Escherichia coli EC4100B]
 gi|320640825|gb|EFX10319.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           G5101]
 gi|320657068|gb|EFX24887.1| ATP-dependent RNA helicase SrmB [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662733|gb|EFX30072.1| ATP-dependent RNA helicase SrmB [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667553|gb|EFX34473.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323156234|gb|EFZ42393.1| ATP-dependent RNA helicase srmB [Escherichia coli EPECa14]
 gi|323159233|gb|EFZ45223.1| ATP-dependent RNA helicase srmB [Escherichia coli E128010]
 gi|323167785|gb|EFZ53480.1| ATP-dependent RNA helicase srmB [Shigella sonnei 53G]
 gi|323177294|gb|EFZ62882.1| ATP-dependent RNA helicase srmB [Escherichia coli 1180]
 gi|323184544|gb|EFZ69918.1| ATP-dependent RNA helicase srmB [Escherichia coli 1357]
 gi|323188309|gb|EFZ73601.1| ATP-dependent RNA helicase srmB [Escherichia coli RN587/1]
 gi|323936316|gb|EGB32607.1| DEAD/DEAH box helicase [Escherichia coli E1520]
 gi|323941161|gb|EGB37346.1| DEAD/DEAH box helicase [Escherichia coli E482]
 gi|323944576|gb|EGB40645.1| DEAD/DEAH box helicase [Escherichia coli H120]
 gi|323949230|gb|EGB45121.1| DEAD/DEAH box helicase [Escherichia coli H252]
 gi|323955812|gb|EGB51570.1| DEAD/DEAH box helicase [Escherichia coli H263]
 gi|323961191|gb|EGB56804.1| DEAD/DEAH box helicase [Escherichia coli H489]
 gi|323968024|gb|EGB63436.1| DEAD/DEAH box helicase [Escherichia coli M863]
 gi|323978394|gb|EGB73479.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
 gi|324008433|gb|EGB77652.1| DEAD/DEAH box helicase [Escherichia coli MS 57-2]
 gi|324014379|gb|EGB83598.1| DEAD/DEAH box helicase [Escherichia coli MS 60-1]
 gi|324020034|gb|EGB89253.1| DEAD/DEAH box helicase [Escherichia coli MS 117-3]
 gi|324118214|gb|EGC12110.1| DEAD/DEAH box helicase [Escherichia coli E1167]
 gi|326340382|gb|EGD64186.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           1125]
 gi|326345065|gb|EGD68809.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           1044]
 gi|327252286|gb|EGE63958.1| ATP-dependent RNA helicase srmB [Escherichia coli STEC_7v]
 gi|330912344|gb|EGH40854.1| ATP-dependent RNA helicase SrmB [Escherichia coli AA86]
 gi|331039998|gb|EGI12218.1| ATP-dependent RNA helicase SrmB [Escherichia coli H736]
 gi|331042872|gb|EGI15013.1| ATP-dependent RNA helicase SrmB [Escherichia coli M605]
 gi|331048888|gb|EGI20964.1| ATP-dependent RNA helicase SrmB [Escherichia coli M718]
 gi|331054386|gb|EGI26413.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA206]
 gi|331064521|gb|EGI36432.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA271]
 gi|331069299|gb|EGI40691.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA280]
 gi|331075033|gb|EGI46353.1| ATP-dependent RNA helicase SrmB [Escherichia coli H591]
 gi|331079178|gb|EGI50380.1| ATP-dependent RNA helicase SrmB [Escherichia coli H299]
 gi|332089185|gb|EGI94292.1| ATP-dependent RNA helicase srmB [Shigella dysenteriae 155-74]
 gi|332100618|gb|EGJ03964.1| ATP-dependent RNA helicase SrmB [Shigella sp. D9]
 gi|332344451|gb|AEE57785.1| ATP-dependent RNA helicase SrmB [Escherichia coli UMNK88]
 gi|332753986|gb|EGJ84360.1| ATP-dependent RNA helicase srmB [Shigella flexneri 4343-70]
 gi|332755796|gb|EGJ86154.1| ATP-dependent RNA helicase srmB [Shigella flexneri 2747-71]
 gi|332761970|gb|EGJ92243.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-671]
 gi|332766578|gb|EGJ96783.1| srmB, DEAD-box RNA helicase [Shigella flexneri 2930-71]
 gi|333000838|gb|EGK20410.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-218]
 gi|333001669|gb|EGK21236.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-272]
 gi|333015945|gb|EGK35280.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-227]
 gi|333016831|gb|EGK36157.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-304]
          Length = 444

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 138/356 (38%), Positives = 206/356 (57%), Gaps = 4/356 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73
           A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  +L+  R +   P
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +      D+++ T GR+
Sbjct: 78  RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQ 192
           L +          +E L++DEADRMLDMGF   I++I     + +QTLLFSAT+  D +Q
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
             +E  L++P  +  N PS+      H +         K ALL  LL+  +  ++ I+F 
Sbjct: 198 DFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFV 255

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
            +++ V  L + L + G + C + G + Q  R + +    EG + ++VA+D+AARG+DIP
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           DV HVFNFD+P   + Y+HRIGRT RAGR G A +LV   D   +  + + IE+ +
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371


>gi|288921374|ref|ZP_06415654.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
 gi|288347226|gb|EFC81523.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
          Length = 569

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 129/366 (35%), Positives = 206/366 (56%), Gaps = 8/366 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++G+ P+ V A+ + G V+P  IQ  T+PL L R D+ G A+TGTGKT +F +P++ +
Sbjct: 2   FAEIGVRPETVAALAEVGIVRPFAIQELTLPLALARTDIIGQARTGTGKTLAFGIPVVQV 61

Query: 63  LE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++ +       P+ L++ PTREL  QV  +  + G    L V  + GG  +E Q   L  
Sbjct: 62  VQAQDEGADGHPQALVVVPTRELCVQVTADIARAGLGRGLRVLSVYGGRAYEPQLSALRS 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR+LD   +  L +  +  LV+DEAD MLD+GF+P ++ I + +P  R T+
Sbjct: 122 GVDIVVGTPGRLLDLARQKALDLARVRTLVLDEADEMLDLGFLPDVERIIAFLPEQRHTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPS---STAETIEHCFVATYAQYSKKCALLQQL 238
           LFSATM   +  ++  F+  P  +    P    +   T +H F    A    K  +L ++
Sbjct: 182 LFSATMPGPVIGLARRFMSRPVHVRAEQPDEGRTVPNTQQHVF---RAHALDKMEVLARV 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ+ D     ++F   ++    +   L ++GF+  A+HG++ Q  R + L  F+ G + +
Sbjct: 239 LQATD-RGLAMVFVRTRRTADKVADDLARRGFAAAAVHGDLGQGQREQALRAFRGGKVDV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  V HV N+  P     Y+HRIGRTGRAG  G A T V  +D+    
Sbjct: 298 LVATDVAARGIDVGGVTHVVNYQCPEDENVYLHRIGRTGRAGGSGVAITFVDWDDLPRWT 357

Query: 359 AIEKLI 364
            + K +
Sbjct: 358 LVNKAL 363


>gi|78048143|ref|YP_364318.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036573|emb|CAJ24264.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 458

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 146/381 (38%), Positives = 213/381 (55%), Gaps = 9/381 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ L LSP +   +   GY   TPIQ +++P +LQ  DV   A TG+GKTA+F L +L 
Sbjct: 3   EFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+    R +    L+L PTRELA QV     K      N+ + +L GG+P   Q   LE
Sbjct: 63  KLDPAVTRAQ---ALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 119

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I S     RQ
Sbjct: 120 AHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT  D ++ ++   L+ P  I V    S  E I+  F      Y +K A+   LL
Sbjct: 180 SLLFSATFPDSIRTLARELLKEPVEITVEGADSAPE-IDQQFFEVDPTYRQK-AVAGLLL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +     ++ ++FCN +K V  +  SL++ GFS  A+HG+++QR R ++L  F   +  ++
Sbjct: 238 RFNP--ESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+HG A +LVA  +     A
Sbjct: 296 VASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARAQA 355

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           +E    + + W    L++  P
Sbjct: 356 LEAEQGQPLKWSRAPLATARP 376


>gi|297200725|ref|ZP_06918122.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
 gi|197712294|gb|EDY56328.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 721

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 135/346 (39%), Positives = 188/346 (54%), Gaps = 5/346 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L  
Sbjct: 30  FASLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLAR 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  GR     PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LERG
Sbjct: 90  LSGGRTEKHRPRAVILTPTRELAMQVADALQPYGDQLGLKMKVVCGGTSMSNQIYALERG 149

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVL+ TPGR+ D  NRG   + +IE+ VIDEAD+M D+GF+P +  +   VP   Q +L
Sbjct: 150 VDVLVATPGRLRDLINRGACSLQDIEVAVIDEADQMSDLGFLPEVTELLDQVPAGGQRML 209

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E+  + + +L NP   EV++      T+ H  +       K  A +   + S+
Sbjct: 210 FSATMENEISTLVKRYLSNPVTHEVDSAQGNVTTMSHHILIV---KPKDKAPVTAAIASR 266

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L + G    A+HG + Q +R + L++FK+G +  +VA+
Sbjct: 267 KGRT--IIFVRTQLGADRIAEQLRESGVKADALHGGMTQGARTRTLADFKDGYVNALVAT 324

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L
Sbjct: 325 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSL 370


>gi|156547765|ref|XP_001605842.1| PREDICTED: similar to CG9748-PA [Nasonia vitripennis]
          Length = 708

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 151/391 (38%), Positives = 215/391 (54%), Gaps = 23/391 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F ++ L+  +  ++  AGY KPTP+Q   IP+++ R DV   AQTG+GKTA+F++P+L  
Sbjct: 228 FDEVKLTEIIKNSINLAGYDKPTPVQKYAIPIIIGRRDVMACAQTGSGKTAAFLVPILNQ 287

Query: 62  ILEKGRA---------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
           I E G           R + P  L+L PTRELA Q+ D   K+     +  A++ GG   
Sbjct: 288 IYESGPPPLPPNASGRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGGSNM 347

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q ++L+RG  +L+ TPGR++D   RGK+ ++N   LV+DEADRMLDMGF P I+ I  
Sbjct: 348 VEQLRELDRGCHLLVATPGRLVDMLGRGKIGLHNCRYLVLDEADRMLDMGFEPQIRRIVE 407

Query: 173 --LVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
              +P T  RQTL+FSAT   E+Q ++ +FL N   + V    ST+E I    V    ++
Sbjct: 408 QDTMPPTGERQTLMFSATFPKEIQMLARDFLSNYIFLAVGRVGSTSENITQKIVWV-EEH 466

Query: 229 SKKCALLQQL----LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
            K+  LL  L     Q        ++F   KK    L   L  Q + V +IHG+  Q  R
Sbjct: 467 EKRSYLLDLLGACNFQEPTQESLTLVFVETKKGADMLEEFLHNQHYPVTSIHGDRSQHER 526

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
              L  F+ G   ++VA+ +AARGLDIP V HV NFD+P   E Y+HRIGRTGR G  G 
Sbjct: 527 EDALRRFRSGHTPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGNLGL 586

Query: 345 AFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
           A +    ++   + D +  L+E   +   WL
Sbjct: 587 ATSFFNSKNQNLVRDLVSLLVEANQELPHWL 617


>gi|324113103|gb|EGC07079.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
 gi|325496344|gb|EGC94203.1| ATP-dependent RNA helicase SrmB [Escherichia fergusonii ECD227]
          Length = 444

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 138/356 (38%), Positives = 206/356 (57%), Gaps = 4/356 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73
           A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  +L+  R +   P
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +      D+++ T GR+
Sbjct: 78  RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQ 192
           L +          +E L++DEADRMLDMGF   I++I     + +QTLLFSAT+  D +Q
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
             +E  L++P  +  N PS+      H +         K ALL  LL+  +  ++ I+F 
Sbjct: 198 DFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFV 255

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
            +++ V  L + L + G + C + G + Q  R + +    EG + ++VA+D+AARG+DIP
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           DV HVFNFD+P   + Y+HRIGRT RAGR G A +LV   D   +  + + IE+ +
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371


>gi|319442814|ref|ZP_07991970.1| putative ATP-dependent RNA helicase [Corynebacterium variabile DSM
           44702]
          Length = 456

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 212/379 (55%), Gaps = 20/379 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG++ ++V A+ D G  +   IQ +T+PL L   D+ G A+TG GKT  F +PML  
Sbjct: 8   FRSLGVAAEIVDALTDQGIDRAFAIQERTLPLALTGKDLIGQARTGMGKTLGFGVPMLDR 67

Query: 63  LEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLT--------------VAL 105
           L        +    R L++ PTREL  QVA++    G +  LT              V  
Sbjct: 68  LFDDADITELDGTVRGLVVVPTRELCLQVAEDLT--GASTRLTAPVGPGKDATRPFRVTA 125

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG+PFE Q   L+ G DV++ TPGR+LD   +  L + ++E+LV+DEAD MLD GF+ 
Sbjct: 126 IYGGVPFEKQTAALDAGTDVVVGTPGRLLDLSRQNLLDLTHVEVLVLDEADEMLDQGFLD 185

Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
            ++ I +     RQT+LFSATM   +  ++ +F+  P R+  +  S+ A       +   
Sbjct: 186 DVKAIMAQTSPNRQTMLFSATMPGPIVALTRSFMHRPVRVRADNSSAQATHATTTQIVFQ 245

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
           +    + ++L ++LQ+    +  I+F   K++   +   L   GF V A+HG++ Q  R 
Sbjct: 246 SHRLDRVSVLARILQTPGRGRT-IVFARTKRSAAMVAEDLAGLGFRVGAVHGDMRQNDRE 304

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L  F++G++ +MVA+D+AARG+D+ DV HV N+ VP   + Y+HRIGRTGRAG  G A
Sbjct: 305 RSLDAFRDGSVDIMVATDVAARGIDVEDVTHVINYQVPEDDKTYVHRIGRTGRAGHSGVA 364

Query: 346 FTLVAKEDIKHIDAIEKLI 364
            TLV  +D+    AI+  +
Sbjct: 365 VTLVDWDDLTRWQAIDDTL 383


>gi|251788689|ref|YP_003003410.1| ATP-dependent RNA helicase SrmB [Dickeya zeae Ech1591]
 gi|247537310|gb|ACT05931.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
          Length = 450

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 142/362 (39%), Positives = 207/362 (57%), Gaps = 15/362 (4%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTLIL 78
           G+ +PT IQ + IP  ++  DV G A TGTGKTA+++LP+L  +L+  R +   PR LIL
Sbjct: 23  GFSRPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQHLLDFPRKKSGPPRILIL 82

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QVAD       + +L +A + GG+ +    +      DV++ T GR+L +  
Sbjct: 83  TPTRELAMQVADQARAMAAHTHLDIATITGGVAYMNHAEVFSENQDVVVATTGRLLQYIK 142

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQKVSEN 197
                   +E L++DEADRMLDMGF   I++I     + +QT+LFSAT+  D +Q  +E 
Sbjct: 143 EENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIQDFAER 202

Query: 198 FLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
            L +P  IE   PS     + ++  + A   Q+  K ALL  LL+  D  ++ I+F  ++
Sbjct: 203 LLNDPITIEAE-PSRRERKKILQWYYRADDIQH--KTALLSHLLKQPDVTRS-IVFVRKR 258

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           + V  L   L   G   C + G + Q  R + +    EG ++++VA+D+AARGLDI DV 
Sbjct: 259 ERVHELVDWLRSAGIESCYLEGEMVQAKRNEAIKRLSEGRVKVLVATDVAARGLDIQDVS 318

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDL 375
           HVFNFD+P  ++ Y+HRIGRTGRAGR G A +LV   D         L+EK   +LN  L
Sbjct: 319 HVFNFDLPRTSDVYLHRIGRTGRAGRKGCAISLVEAHDY-------LLLEKVGRYLNEPL 371

Query: 376 SS 377
            +
Sbjct: 372 KA 373


>gi|229591936|ref|YP_002874055.1| ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
 gi|229363802|emb|CAY51237.1| ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 456

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 140/369 (37%), Positives = 213/369 (57%), Gaps = 5/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ AV +  +V+PTP+Q   IPL L+  D+   AQTG+GKTA+FVLP+L  
Sbjct: 10  FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPILNR 69

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G A+VR+  +TLIL PTRELA Q     E++ +   +   L+ GG  F+ Q   L +
Sbjct: 70  L-IGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK 128

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+LI TPGR+++  N G L +  +E+LV+DEADRMLDMGF   +Q + +     +QT+
Sbjct: 129 VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVAECINRQQTM 188

Query: 182 LFSATM-TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT     L+++    L NP+ ++VN  S    T     V T      K  +L  LL 
Sbjct: 189 LFSATTGGSTLREMVAKVLNNPEHLQVNNVSDLNATTRQQIV-TADHNVHKEQILNWLL- 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +T +  I+F N +     +   L  Q +    +HG  DQ+ R   +   K G ++++V
Sbjct: 247 ANETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + +I
Sbjct: 307 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 366

Query: 361 EKLIEKKVD 369
           E+ +++  +
Sbjct: 367 ERYLKQSFE 375


>gi|296116226|ref|ZP_06834844.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977332|gb|EFG84092.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 406

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 142/383 (37%), Positives = 215/383 (56%), Gaps = 17/383 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + GL+  V   +   G   P+PIQI+ IP +L   DV GIA TGTGKT +F  P+   
Sbjct: 36  FVETGLTAPVRDNLSRMGVRIPSPIQIQAIPPILSGRDVEGIAPTGTGKTIAFAAPLTQR 95

Query: 63  LEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  G    R+P   R + L PTRELA Q    +    K   L V + IGG+P   Q + L
Sbjct: 96  L-LGAPHERIPHVARIICLSPTRELANQTGGAWRGCAKGTGLKVVVTIGGVPRARQVRDL 154

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GAD+L+ TPGR++D  + G ++ +    LV+DEADRMLD+GFI  + +I S +P T Q
Sbjct: 155 EAGADILVATPGRLVDLLSDGAVVADATTALVVDEADRMLDLGFIDDMMSIASRLPVTHQ 214

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E+  +    L  P R++V+T  +    I    +  +     K   L   L
Sbjct: 215 TLLFSATMPAEIVDLGRRLLHRPVRVKVDTADAPPPRIRQQVM--FIPPRHKLGALVSFL 272

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +  + +  +IF   ++   +L ++L ++  +   +HG   Q  R + L +F++  + ++
Sbjct: 273 STHPS-RRVLIFTETRRQADDLANALGRE-MTCGVMHGEHTQARRERTLRDFRDHKLHVL 330

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+ ARG+D+ DV  V N+D+P +AE Y+HRIGRT RAGR G A +L A E       
Sbjct: 331 IATDVMARGIDVEDVMLVVNYDIPRQAEAYVHRIGRTARAGRQGSALSLCAPE------- 383

Query: 360 IEKLIEKKVDWLNGD-LSSLNPP 381
            E+L+ K ++ + G  L +++PP
Sbjct: 384 -ERLLLKDIERVTGARLKAIDPP 405


>gi|75061689|sp|Q5R6D8|DDX46_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46
 gi|55731939|emb|CAH92678.1| hypothetical protein [Pongo abelii]
          Length = 1032

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 149/447 (33%), Positives = 242/447 (54%), Gaps = 25/447 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232
           V   RQT++FSAT    ++ +    L  P  ++V   S     +E    V    +   K 
Sbjct: 550 VRPDRQTVMFSATFPRAMEALVRRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L    Q   ++   IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK
Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++
Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             ++   I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   
Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779

Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439
           +   +  +   E +K+ K    +Q++D
Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805


>gi|33603341|ref|NP_890901.1| ATP-dependent RNA helicase DbpA [Bordetella bronchiseptica RB50]
 gi|33577465|emb|CAE34730.1| probable ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
          Length = 462

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 143/362 (39%), Positives = 205/362 (56%), Gaps = 10/362 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ + TPIQ +++PL+L+  D+   A+TG+GKTA+F L +L  L+  R     P+ L+L 
Sbjct: 23  GFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQNLDVNRL---APQALVLC 79

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N+ V  L GG     Q + L RG  +++ TPGRI DH  
Sbjct: 80  PTRELADQVAQELRRLARLIPNVKVLTLCGGAAARPQAESLARGTHLVVGTPGRIQDHLA 139

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           RG L ++ +  LV+DEADRM+DMGF   I  I S  P  RQTLLFSAT  D ++K+S  F
Sbjct: 140 RGSLDLSTLNTLVLDEADRMVDMGFYDDIAAIASHCPARRQTLLFSATYPDNIRKLSARF 199

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           L+NP  I+V      +   +  F     Q     A L    +   T+     FCN K   
Sbjct: 200 LRNPAEIKVEAQHDASRIEQLFFEIDEGQRLDAVAALLAHFRPASTLA----FCNTKIRS 255

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            +L   L  QG S  A++G+++QR R +IL  F   +  ++VA+D+AARGLDI ++G V 
Sbjct: 256 HDLVERLRAQGISAQALNGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLGAVI 315

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           N DV    E ++HRIGR+GR  + G A +L + E+++  + IE+     + W   DL SL
Sbjct: 316 NVDVTKDTEVHVHRIGRSGRGDQKGLALSLCSPEEMRWANLIEQYQGAPLKW--ADLGSL 373

Query: 379 NP 380
            P
Sbjct: 374 RP 375


>gi|257452688|ref|ZP_05617987.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_5R]
 gi|317059228|ref|ZP_07923713.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_5R]
 gi|313684904|gb|EFS21739.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_5R]
          Length = 528

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 214/368 (58%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60
           +F +LG+  K++ A+   GY  PTPIQ  TIP +L    D+ G AQTGTGKTA+F LP+L
Sbjct: 9   EFRELGIGEKLLKALSKKGYETPTPIQSLTIPALLTGEKDIIGQAQTGTGKTAAFALPIL 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +E         + ++L PTRELA QVA+     G +  + +  + GG   + Q K L 
Sbjct: 69  ENIEHQDK----IQGIVLTPTRELALQVAEEMNSLGSSKKIKIIPVYGGQSIDIQRKLLR 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+++ TPGR++D   R  L + +++  ++DEAD ML+MGF+  ++ I       ++ 
Sbjct: 125 NGADIIVGTPGRVIDFIERKFLRLQDLKYFILDEADEMLNMGFLEEVEKILEATNEDKRM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+ KV++  +++ + + V     T +  +  +     +  K  AL + +  
Sbjct: 185 LFFSATMPSEILKVAKKHMKDYEILAVKARELTTDLTDQIYFEV-NERDKFEALCRIIDL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++D    GI+FC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I ++V
Sbjct: 244 AEDFY--GIVFCRTKTDVNEVVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKAKKINILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV N+ +P  AE+Y+HRIGRTGRAG+ G A T +  ++ + +  I
Sbjct: 302 ATDVAARGIDVNDLSHVINYAIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 361

Query: 361 EKLIEKKV 368
           +K+++ ++
Sbjct: 362 QKIVKTEI 369


>gi|209762794|gb|ACI79709.1| ATP-dependent RNA helicase [Escherichia coli]
          Length = 444

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 138/356 (38%), Positives = 206/356 (57%), Gaps = 4/356 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73
           A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  +L+  R +   P
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +      D+++ T GR+
Sbjct: 78  RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQ 192
           L +          +E L++DEADRMLDMGF   I++I     + +QTLLFSAT+  D +Q
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
             +E  L++P  +  N PS+      H +         K ALL  LL+  +  ++ I+F 
Sbjct: 198 DFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFV 255

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
            +++ V  L + L + G + C + G + Q  R + +    EG + ++VA+D+AARG+DIP
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           DV HVFNFD+P   + Y+HRIGRT RAGR G A +LV   D   +  + + IE+ +
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371


>gi|195484183|ref|XP_002090584.1| GE13195 [Drosophila yakuba]
 gi|194176685|gb|EDW90296.1| GE13195 [Drosophila yakuba]
          Length = 821

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 133/376 (35%), Positives = 208/376 (55%), Gaps = 35/376 (9%)

Query: 10  PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
           PK +  ++D  GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L+ ++    
Sbjct: 401 PKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPK 460

Query: 69  RVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             R+      P  +I+ PTRELA Q+ +   K+G+   +   +++GG+  E Q  +L  G
Sbjct: 461 IERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLG 520

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177
            +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P T     
Sbjct: 521 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 580

Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
                               RQT++F+ATM   +++++  +L+ P  + + +     E  
Sbjct: 581 TEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERT 640

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
           E   V    +  K+  L++ L +  D     IIF NQKK    L   LEK G++ C +HG
Sbjct: 641 EQ-IVYMMGENDKRKKLMEILSRKIDP--PVIIFVNQKKGADVLAKGLEKLGYNSCTLHG 697

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
              Q  R   L+  K G   ++VA+D+A RG+DI DV  V N+D+    E+Y HRIGRTG
Sbjct: 698 GKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTG 757

Query: 338 RAGRHGKAFTLVAKED 353
           RAG+ G A + V K+D
Sbjct: 758 RAGKTGCAISFVTKDD 773


>gi|212533429|ref|XP_002146871.1| ATP-dependent RNA helicase (Drs1), putative [Penicillium marneffei
           ATCC 18224]
 gi|210072235|gb|EEA26324.1| ATP-dependent RNA helicase (Drs1), putative [Penicillium marneffei
           ATCC 18224]
          Length = 826

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 142/359 (39%), Positives = 202/359 (56%), Gaps = 3/359 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS  ++  +   G+ KPTPIQ K IP+ L   DV G A TG+GKT +F++P+L  
Sbjct: 306 FQNYNLSRPILRGLAAVGFTKPTPIQRKAIPVALLGKDVVGGAVTGSGKTGAFIIPILER 365

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   + +V   R  IL PTRELA Q  +   K     ++T   LIGG     Q   L++ 
Sbjct: 366 LLYRQRKVPTSRVAILMPTRELAVQCFNVATKLATYTDITFCQLIGGFSLREQENILKKR 425

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 426 PDIIIATPGRFIDHMRNSSSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTM 485

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMTD + K+    L  P R+ V+    TA T+   FV     +  K+ A L  L Q
Sbjct: 486 LFSATMTDSVDKLIRVGLNRPVRLMVDAKKQTAGTLVQEFVRLRPGREDKRLASLIHLCQ 545

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  IIF  QKK    +       G     +HG++ Q  R+K + +F++G +  ++
Sbjct: 546 QVYTSRV-IIFFRQKKEAHRVRVIFGLFGLKAAELHGSMSQEQRIKSVEDFRDGKVAFLL 604

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           A+D+A+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A TL A  D K + A
Sbjct: 605 ATDVASRGLDIKGVETVINYEAPQTHEIYLHRVGRTARAGRSGRACTLAADPDRKVVRA 663


>gi|33598402|ref|NP_886045.1| ATP-dependent RNA helicase DbpA [Bordetella parapertussis 12822]
 gi|33574531|emb|CAE39177.1| probable ATP-dependent RNA helicase [Bordetella parapertussis]
          Length = 462

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 143/362 (39%), Positives = 205/362 (56%), Gaps = 10/362 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ + TPIQ +++PL+L+  D+   A+TG+GKTA+F L +L  L+  R     P+ L+L 
Sbjct: 23  GFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQNLDVNRL---APQALVLC 79

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N+ V  L GG     Q + L RG  +++ TPGRI DH  
Sbjct: 80  PTRELADQVAQELRRLARLIPNVKVLTLCGGAAARPQAESLARGTHLVVGTPGRIQDHLA 139

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           RG L ++ +  LV+DEADRM+DMGF   I  I S  P  RQTLLFSAT  D ++K+S  F
Sbjct: 140 RGSLDLSTLNTLVLDEADRMVDMGFYDDIAAIASHCPARRQTLLFSATYPDNIRKLSARF 199

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           L+NP  I+V      +   +  F     Q     A L    +   T+     FCN K   
Sbjct: 200 LRNPAEIKVEAQHDASRIEQLFFEIDEGQRLDAVAALLAHFRPASTLA----FCNTKIRS 255

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            +L   L  QG S  A++G+++QR R +IL  F   +  ++VA+D+AARGLDI ++G V 
Sbjct: 256 HDLVERLRAQGISAEALNGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLGAVI 315

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           N DV    E ++HRIGR+GR  + G A +L + E+++  + IE+     + W   DL SL
Sbjct: 316 NVDVTKDTEVHVHRIGRSGRGDQKGLALSLCSPEEMRWANLIEQYQGAPLKW--ADLGSL 373

Query: 379 NP 380
            P
Sbjct: 374 RP 375


>gi|28901323|ref|NP_800978.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28809870|dbj|BAC62811.1| ATP-dependent RNA helicase, DEAD box family [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|328469261|gb|EGF40207.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus 10329]
          Length = 448

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 140/389 (35%), Positives = 210/389 (53%), Gaps = 10/389 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + KPT IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 5   LQFKDLGLDNRLLKNLKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 64

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L+      + PR +IL PTRELA QV           +   AL++GG  F  Q K L
Sbjct: 65  HKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYDAALILGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGR+ DH     L ++ +E L++DEADRMLD+GF P ++ I +     R 
Sbjct: 125 RRYPKFIVATPGRLADHLEHRSLYLDGLETLILDEADRMLDLGFAPELRRIHNAAKHRRR 184

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+   E+  ++   L  PKRI V   +   + I   F         K A+L++
Sbjct: 185 QTLMFSATLDHAEVNDIASEMLNAPKRIAVGVSNEEHKDITQKFYLC-DHLDHKEAILER 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L S+   +  IIF   + +   L   L ++     A+ GN++Q  R  I+S F+    +
Sbjct: 244 VL-SEAEYRQVIIFTATRDDTERLTAKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFK 302

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLDI  V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D    
Sbjct: 303 ILVTTDVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSF 362

Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNPP 381
             IE  +++ + +     L G    L PP
Sbjct: 363 KRIETYLQQDLAFSVFEDLKGKFKGLKPP 391


>gi|82546134|ref|YP_410081.1| ATP-dependent RNA helicase RhlB [Shigella boydii Sb227]
 gi|187732305|ref|YP_001882395.1| ATP-dependent RNA helicase RhlB [Shigella boydii CDC 3083-94]
 gi|123558220|sp|Q31UK5|RHLB_SHIBS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739553|sp|B2TU12|RHLB_SHIB3 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|81247545|gb|ABB68253.1| putative ATP-dependent RNA helicase [Shigella boydii Sb227]
 gi|187429297|gb|ACD08571.1| ATP-dependent RNA helicase RhlB [Shigella boydii CDC 3083-94]
          Length = 421

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 144/373 (38%), Positives = 210/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV  +   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVVEVLEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + IEV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|313497676|gb|ADR59042.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida BIRD-1]
          Length = 440

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 138/372 (37%), Positives = 216/372 (58%), Gaps = 11/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F+   L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 61

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L+ GR  +R   +LIL PTRELA Q     + + +   +   L+ GG  F+ Q   L
Sbjct: 62  LVDLKGGRVEIR---SLILLPTRELAQQTLKQVQLFSQFTYVKAGLVTGGEDFKEQAAML 118

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  DVLI TPGR+L+  N G L ++++++L++DEADRMLDMGF   ++ +        Q
Sbjct: 119 RKVPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQ 178

Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAE-TIEHCFVATYAQYSKKCALLQQ 237
           TLLFSAT     L+ +    L++P+ + +N+ S  AE T +    A + Q+ ++ A   Q
Sbjct: 179 TLLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIA---Q 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L + +T    IIF N +     +   L  +      +HG  DQ+ R   +  FK+G+ +
Sbjct: 236 WLLANETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSK 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  +  V NFD+P   + Y+HR+GRTGRAG  G A +L+   D   +
Sbjct: 296 VLVATDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLM 355

Query: 358 DAIEKLIEKKVD 369
            +IE+ ++++ +
Sbjct: 356 SSIERYLKQQFE 367


>gi|157155812|ref|YP_001463900.1| ATP-dependent RNA helicase SrmB [Escherichia coli E24377A]
 gi|191167986|ref|ZP_03029788.1| ATP-dependent RNA helicase SrmB [Escherichia coli B7A]
 gi|300817647|ref|ZP_07097862.1| DEAD/DEAH box helicase [Escherichia coli MS 107-1]
 gi|300927047|ref|ZP_07142799.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|301330322|ref|ZP_07222969.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
 gi|307313853|ref|ZP_07593469.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|309794370|ref|ZP_07688793.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|157077842|gb|ABV17550.1| ATP-dependent RNA helicase SrmB [Escherichia coli E24377A]
 gi|190901993|gb|EDV61740.1| ATP-dependent RNA helicase SrmB [Escherichia coli B7A]
 gi|300416931|gb|EFK00242.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|300529635|gb|EFK50697.1| DEAD/DEAH box helicase [Escherichia coli MS 107-1]
 gi|300843656|gb|EFK71416.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
 gi|306906354|gb|EFN36869.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|308121826|gb|EFO59088.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|315061895|gb|ADT76222.1| ATP-dependent RNA helicase [Escherichia coli W]
 gi|323377524|gb|ADX49792.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11]
          Length = 444

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 138/356 (38%), Positives = 206/356 (57%), Gaps = 4/356 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73
           A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  +L+  R +   P
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +      D+++ T GR+
Sbjct: 78  RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQ 192
           L +          +E L++DEADRMLDMGF   I++I     + +QTLLFSAT+  D +Q
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
             +E  L++P  +  N PS+      H +         K ALL  LL+  +  ++ I+F 
Sbjct: 198 DFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFV 255

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
            +++ V  L + L + G + C + G + Q  R + +    EG + ++VA+D+AARG+DIP
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           DV HVFNFD+P   + Y+HRIGRT RAGR G A +LV   D   +  + + IE+ +
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371


>gi|82545029|ref|YP_408976.1| ATP-dependent RNA helicase SrmB [Shigella boydii Sb227]
 gi|187731766|ref|YP_001881357.1| ATP-dependent RNA helicase SrmB [Shigella boydii CDC 3083-94]
 gi|81246440|gb|ABB67148.1| ATP-dependent RNA helicase [Shigella boydii Sb227]
 gi|187428758|gb|ACD08032.1| ATP-dependent RNA helicase SrmB [Shigella boydii CDC 3083-94]
 gi|320175854|gb|EFW50935.1| ATP-dependent RNA helicase SrmB [Shigella dysenteriae CDC 74-1112]
 gi|320186377|gb|EFW61111.1| ATP-dependent RNA helicase SrmB [Shigella flexneri CDC 796-83]
 gi|332092586|gb|EGI97658.1| ATP-dependent RNA helicase srmB [Shigella boydii 3594-74]
          Length = 444

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 138/356 (38%), Positives = 206/356 (57%), Gaps = 4/356 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73
           A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  +L+  R +   P
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +      D+++ T GR+
Sbjct: 78  RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQ 192
           L +          +E L++DEADRMLDMGF   I++I     + +QTLLFSAT+  D +Q
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
             +E  L++P  +  N PS+      H +         K ALL  LL+  +  ++ I+F 
Sbjct: 198 DFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFV 255

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
            +++ V  L + L + G + C + G + Q  R + +    EG + ++VA+D+AARG+DIP
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           DV HVFNFD+P   + Y+HRIGRT RAGR G A +LV   D   +  + + IE+ +
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371


>gi|195147728|ref|XP_002014827.1| GL19380 [Drosophila persimilis]
 gi|194106780|gb|EDW28823.1| GL19380 [Drosophila persimilis]
          Length = 437

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 132/382 (34%), Positives = 211/382 (55%), Gaps = 34/382 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + G  P+++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L+ 
Sbjct: 11  WNESGFPPEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSW 70

Query: 63  LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           ++      R+      P  +I+ PTRELA Q+ +   K+G+   +   +++GG+  E Q 
Sbjct: 71  IQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETIKFGQPLGIRTVVVVGGLSREEQG 130

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 131 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 190

Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           T                         RQT++F+ATM   +++++ ++L+ P  + + +  
Sbjct: 191 TNLKPDTEEAEDENKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPSTVYIGSMG 250

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
              E  E   V    +  K+  L++ L +  D     IIF NQKK    L   LEK G++
Sbjct: 251 KPTERTEQ-IVYMMGENDKRKKLMEILSRKIDPPV--IIFVNQKKGADVLAKGLEKLGYN 307

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
            C +HG   Q  R   L+  K G   ++VA+D+A RG+DI DV  V N+D+    E+Y H
Sbjct: 308 SCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTH 367

Query: 332 RIGRTGRAGRHGKAFTLVAKED 353
           RIGRTGRAG+ G A + V K+D
Sbjct: 368 RIGRTGRAGKTGCAISFVTKDD 389


>gi|320176023|gb|EFW51092.1| ATP-dependent RNA helicase RhlB [Shigella dysenteriae CDC 74-1112]
          Length = 421

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 144/373 (38%), Positives = 210/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV  +   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVVEVLEKKGFHDCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + IEV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|198427069|ref|XP_002129152.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 49
           [Ciona intestinalis]
          Length = 452

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 149/394 (37%), Positives = 228/394 (57%), Gaps = 12/394 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FADLGL+  ++  + + G+ KPTPIQ   IP +LQ  D  G ++TG+GKTA+F LP+L 
Sbjct: 6   NFADLGLNEWIIQHLGNLGFNKPTPIQYNCIPPILQGKDCFGCSKTGSGKTAAFALPVLQ 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    +     L+L PTRELA Q+++ F   GK  N+  ++++GG+    Q  +L++
Sbjct: 66  KLSEDPYGIF---CLVLTPTRELAYQISEQFTLIGKPINIRTSVIVGGMDIIQQAYELQK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM---GFIPYIQNITSLVPFTR 178
              ++I TPGR+ D     +   NN++ LV+DEADR+LD     F   +  I S +P  R
Sbjct: 123 KPHIVIATPGRLADLLRSNE---NNVKFLVLDEADRLLDKLDGDFTNDLNLIFSSLPKER 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV--ATYAQYSKKCALLQ 236
           QTLLFSAT+TD L +V E   ++P   + +   ST + ++  ++    + +      + +
Sbjct: 180 QTLLFSATLTDTLNEVKELSTKSPFFWQSDNKVSTVDNLDQRYILLPEHIRDGYLVYICK 239

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL+ Q T ++ +IF    KN   L   L+K GF    +H  + QR R+  LS FK    
Sbjct: 240 DLLEKQPT-RSIMIFTKTCKNCQVLGMLLQKAGFQCVVLHSLMKQRERLTALSRFKSSNT 298

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+D+AARGLDIP V  V N +VP  A+NYIHR+GRT RAGR G + TLV + DI  
Sbjct: 299 RLLVATDVAARGLDIPVVQVVINHNVPGLAKNYIHRVGRTARAGRSGISITLVTQFDIHR 358

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           + +IE+ I  K+     D   +   L K+++ + 
Sbjct: 359 VQSIEEHINTKLKEYEVDEREVLKILTKVNVMKR 392


>gi|331655464|ref|ZP_08356457.1| ATP-dependent RNA helicase RhlB [Escherichia coli M718]
 gi|331046785|gb|EGI18869.1| ATP-dependent RNA helicase RhlB [Escherichia coli M718]
          Length = 421

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + IEV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTCGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|307105200|gb|EFN53450.1| hypothetical protein CHLNCDRAFT_36420 [Chlorella variabilis]
          Length = 421

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 134/337 (39%), Positives = 193/337 (57%), Gaps = 13/337 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL----EKGRARVRMPRTL 76
           +  P+PIQ + +PL L   D+ GIA TG+GKT +F LP L  +    E G A  + P  L
Sbjct: 23  FQHPSPIQAQCLPLALSGRDLVGIAATGSGKTLAFGLPALRHIRAQSEAGVATGKKPVAL 82

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           ++ PTRELA Q+    E+ G    ++   + GG+P   Q   L +GA +++ TPGR+ D 
Sbjct: 83  VIAPTRELALQICAVLEEAGSQCGISTVCVYGGVPKREQVAALRKGAAIVVATPGRLEDL 142

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
              G   ++ +  LV+DEADRMLD+GF P+I+ I       RQTL+FSAT    ++K++ 
Sbjct: 143 LEDGACRLDEVSYLVLDEADRMLDLGFEPHIRAIAGKTRADRQTLMFSATWPPAIRKLAS 202

Query: 197 NFLQNPKRIEVNT-----PSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
            FL +P R+ + +       S  + IE   +   A+  +   LLQ+   S+      IIF
Sbjct: 203 EFLCHPVRVTIGSQDLAASHSVTQVIE--VIEDRARDGRLHELLQRYHASRSN--RVIIF 258

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
              KK  V +   L+++G+   AIHG+I Q  R   +  FK G + L+VA+D+AARGLDI
Sbjct: 259 VLYKKEAVRVEQLLQRKGWKAAAIHGDISQVQRSSAVEQFKSGAVPLLVATDVAARGLDI 318

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           PDV  V N+  P   E+Y+HRIGRTGRAG+ GKA T 
Sbjct: 319 PDVEAVLNYSFPLTTEDYVHRIGRTGRAGKTGKAHTF 355


>gi|292489103|ref|YP_003531990.1| ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
 gi|292900225|ref|YP_003539594.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291200073|emb|CBJ47199.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291554537|emb|CBA22120.1| ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
 gi|312173260|emb|CBX81515.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC BAA-2158]
          Length = 442

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 133/353 (37%), Positives = 203/353 (57%), Gaps = 4/353 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ ++ + G+ +PT IQ + IP  L+  DV G A TGTGKTA+++LP L  
Sbjct: 6   FSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVAD   +  K+  L +A + GG+ F    +    
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTRLDIATITGGVAFMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DV++ T GR+L +          +E L++DEADRMLDMGF   I+ I++   + +QTL
Sbjct: 126 NQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQTL 185

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  E ++  +E  L  P  IE +      + I+  +         K ALL  LL+
Sbjct: 186 LFSATLEGEAIKDFAERILNEPVEIEADPARRERKKIQQWYYRA-DDIKHKTALLLHLLK 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   ++F  +++ V  +C  L + G +   + G + Q  R + +    +G + ++V
Sbjct: 245 -QPEVTRAVVFVRKRERVHEVCGWLREAGINSSYLEGELVQAKRNEAIKRVVDGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           A+D+AARG+DI DV HV NFD+P  ++ Y+HRIGRTGRAG+ G A +LV   D
Sbjct: 304 ATDIAARGIDIDDVSHVINFDMPVTSDTYLHRIGRTGRAGKKGIAISLVEAHD 356


>gi|71145379|gb|AAZ25852.1| ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea 34H]
          Length = 430

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 135/368 (36%), Positives = 213/368 (57%), Gaps = 4/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F    L  +++ ++   GY KPT IQ   IP  +   DV   A TGTGKTA+F+LP+   
Sbjct: 15  FEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQH 74

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA Q+ ++ E+  +   +   ++ GG+ + +    L  
Sbjct: 75  LLDYPRTKPGFPRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHADILTS 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+L+ TPGR+L++    +     IEILV+DEADRMLD+GF   I  I +   + +QT+
Sbjct: 135 TTDILVATPGRLLEYIENEQFDAREIEILVLDEADRMLDLGFSETINRIVAEARWRKQTM 194

Query: 182 LFSATM-TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+ +  +Q  +E  L  P  +E + PS   + + H ++      + K  LL   L+
Sbjct: 195 LFSATLESPGVQLFAEEVLNEPVFLE-SKPSRKEKAVIHQWLHLADDANHKLNLLVNTLK 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+ ++  ++F N+++ V  L   L  +      + G + Q  R K +  FK+G ++++V
Sbjct: 254 -QEGVERTVVFANKRETVQYLSGKLYAEELPCVWLEGKMPQDKRNKAIERFKKGEVKVLV 312

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+ HV NFD+P + + YIHRIGRTGRAG+ G A +LV   D+  I  I
Sbjct: 313 ATDVAARGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLVEAHDMGVIGKI 372

Query: 361 EKLIEKKV 368
           E+  ++++
Sbjct: 373 ERYTKERL 380


>gi|327443709|gb|EGE90363.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
          Length = 560

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 146/398 (36%), Positives = 225/398 (56%), Gaps = 24/398 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L  
Sbjct: 51  FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 110

Query: 63  L----EKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    ++G   +     P+ L++ PTRELA QV+ +           V  + GG+ +E+Q
Sbjct: 111 ITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQ 170

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G DV++ TPGR+LD   R  L ++++ I+V+DEAD MLD+GF+P ++N+    P
Sbjct: 171 IDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTP 230

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYAQYSKKC 232
            +RQT+LFSATM   +  ++ + L+ P  +     +T ++  +T +  +    A    K 
Sbjct: 231 ASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY---QAHPLDKI 287

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            ++ ++LQ+ D  K  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+
Sbjct: 288 EIIGRILQANDVEKV-IIFCRTKRACQRLSDDLDDRGFKPRAIHGDLTQVAREKALKKFR 346

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   
Sbjct: 347 HGEATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWA 406

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           D+       KLI K    LN +LS    P+E    + H
Sbjct: 407 DVTRW----KLINKA---LNLELSE---PVETYSTSPH 434


>gi|33593906|ref|NP_881550.1| ATP-dependent RNA helicase DbpA [Bordetella pertussis Tohama I]
 gi|33563980|emb|CAE43244.1| probable ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|332383325|gb|AEE68172.1| ATP-dependent RNA helicase DbpA [Bordetella pertussis CS]
          Length = 462

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 143/362 (39%), Positives = 205/362 (56%), Gaps = 10/362 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ + TPIQ +++PL+L+  D+   A+TG+GKTA+F L +L  L+  R     P+ L+L 
Sbjct: 23  GFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQNLDVNRL---APQALVLC 79

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N+ V  L GG     Q + L RG  +++ TPGRI DH  
Sbjct: 80  PTRELADQVAQELRRLARLIPNVKVLTLCGGAAARPQAESLARGTHLVVGTPGRIQDHLA 139

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           RG L ++ +  LV+DEADRM+DMGF   I  I S  P  RQTLLFSAT  D ++K+S  F
Sbjct: 140 RGSLDLSTLNTLVLDEADRMVDMGFYDDIAAIASHCPARRQTLLFSATYPDNIRKLSARF 199

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           L+NP  I+V      +   +  F     Q     A L    +   T+     FCN K   
Sbjct: 200 LRNPAEIKVEAQHDASRIEQLFFEIDEGQRLDAVATLLAHFRPASTLA----FCNTKIRS 255

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            +L   L  QG S  A++G+++QR R +IL  F   +  ++VA+D+AARGLDI ++G V 
Sbjct: 256 HDLVERLRAQGISAQALNGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLGAVI 315

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           N DV    E ++HRIGR+GR  + G A +L + E+++  + IE+     + W   DL SL
Sbjct: 316 NVDVTKDTEVHVHRIGRSGRGDQKGLALSLCSPEEMRWANLIEQYQGAPLKW--ADLGSL 373

Query: 379 NP 380
            P
Sbjct: 374 RP 375


>gi|242808610|ref|XP_002485202.1| ATP dependent RNA helicase (Dbp1), putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218715827|gb|EED15249.1| ATP dependent RNA helicase (Dbp1), putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 680

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 138/363 (38%), Positives = 204/363 (56%), Gaps = 22/363 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 191 FTNPPLDDHLIANIALARYTTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 250

Query: 63  LEK----------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
             +                GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 251 AFQTGPSAAPAPAAGGNFYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVV 310

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 311 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQ 370

Query: 167 IQNITSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 371 IRRIVEGEDMPQVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQRI- 429

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             Y +   K ++L  +L +  T    +IF   K+   +LC  L  Q F   AIHG+  QR
Sbjct: 430 -EYVEDHDKRSVLLDILHTHGTTGLTLIFVETKRMADSLCDFLINQNFPATAIHGDRTQR 488

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 489 ERERALEMFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 548

Query: 343 GKA 345
           G A
Sbjct: 549 GIA 551


>gi|210623599|ref|ZP_03293925.1| hypothetical protein CLOHIR_01875 [Clostridium hiranonis DSM 13275]
 gi|210153469|gb|EEA84475.1| hypothetical protein CLOHIR_01875 [Clostridium hiranonis DSM 13275]
          Length = 371

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 133/363 (36%), Positives = 204/363 (56%), Gaps = 10/363 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF DL +   ++  +  +G  KPTP+Q + I ++    DV   +QTGTGKT +F++P L
Sbjct: 1   MDFKDLNIKEDIIDILKKSGITKPTPVQEECIGIIKDGRDVIAQSQTGTGKTLAFLIPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + K +  V     LIL PTRELA Q+++  EK  +   L +    GG   ++Q  KL+
Sbjct: 61  EKINKNKKDVS---ALILTPTRELALQISNEAEKLAEPLGLNILSAYGGKDIKSQVNKLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH +R  + + N++I ++DEAD+ML MGF   I  I       RQ+
Sbjct: 118 GNIHLVIATPGRLLDHLDRKTISLKNLDIFILDEADQMLLMGFKNEIDAILKETNKKRQS 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQYSKKCALLQQL 238
           L FSATM  +++K++  +  +P  IE+ +   T E I    V T    ++   C +L   
Sbjct: 178 LFFSATMDSQVKKLAYRYTNDPAFIEIKSQEVTLEKINQSIVKTTDRRKFDSLCKVL--- 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               D     IIFC  K+    L   +  +G++   IH +I Q  R +I+ NF+    Q 
Sbjct: 235 --DGDNPFMAIIFCRTKRRADKLEEDMGSRGYNCEKIHSDISQAKRERIMKNFRNMKTQY 292

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDI  V H++N+D P  AE+YIHRIGRTGRAG +G     V  ++ K ++
Sbjct: 293 LIATDVASRGLDITGVTHIYNYDFPETAEDYIHRIGRTGRAGENGDTCAFVTDKNTKILE 352

Query: 359 AIE 361
            +E
Sbjct: 353 DVE 355


>gi|150020730|ref|YP_001306084.1| DEAD/DEAH box helicase domain-containing protein [Thermosipho
           melanesiensis BI429]
 gi|149793251|gb|ABR30699.1| DEAD/DEAH box helicase domain protein [Thermosipho melanesiensis
           BI429]
          Length = 514

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 133/370 (35%), Positives = 218/370 (58%), Gaps = 11/370 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           M+F D  LS K + A+ + G+ KPTP+Q + IP++L +  ++   A+TGTGKTA+F +P+
Sbjct: 1   MNFEDFNLSEKTLYAINEKGFEKPTPVQKRVIPILLNKEKNLIVQAKTGTGKTAAFGIPL 60

Query: 60  LTILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + +LE KG  +      +IL PTRELA QV++      K   L +  + GG     Q + 
Sbjct: 61  IELLESKGYVQ-----AIILTPTRELALQVSEEINSL-KRKRLKILPVYGGQSISRQIEH 114

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RG D+++ TPGRILDH  R  + ++ +E  ++DEAD MLDMGFI  ++ I       +
Sbjct: 115 LKRGVDIVVGTPGRILDHLERKTIDLSKVEYFILDEADEMLDMGFIDDVEKILKSTSDEK 174

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             L+FSAT+   +  +++ +++N + I++     T    E  ++      + K   L ++
Sbjct: 175 IFLMFSATIPRRIIDLAKKYIKNYEVIKIADKQLTTNLTEQIYIEL--NENDKFEALCRI 232

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +D    G++FC  K  V N+   L ++G+   A+HG+  Q  R ++L  FKE  I +
Sbjct: 233 IDVEDDF-YGMVFCRTKVEVDNVSSKLIERGYDAEALHGDFSQYQRERVLKKFKEKRINI 291

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV N+ +P   E+Y+HR+GRTGRAGR G A T V  ++ + + 
Sbjct: 292 LVATDVAARGIDISGLTHVINYSIPLNPEHYVHRVGRTGRAGREGVAITFVTPKEYRQLF 351

Query: 359 AIEKLIEKKV 368
            I+K  + K+
Sbjct: 352 RIKKFSKAKI 361


>gi|66800707|ref|XP_629279.1| hypothetical protein DDB_G0293168 [Dictyostelium discoideum AX4]
 gi|74896763|sp|Q54CE0|DDX17_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx17; AltName:
           Full=DEAD box protein 17
 gi|60462734|gb|EAL60936.1| hypothetical protein DDB_G0293168 [Dictyostelium discoideum AX4]
          Length = 785

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 141/406 (34%), Positives = 227/406 (55%), Gaps = 10/406 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        ++  ++ AG+  PTPIQ +  P+ L+  D+ G+A+TG+GKT +F+LP +
Sbjct: 384 MQFTQAPFPGYLMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSI 443

Query: 61  TILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             +   +  +R    P  L+L PTRELA Q+ +   K+G    ++   + GG     Q  
Sbjct: 444 VHIN-AQPVLREDDGPIVLVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASKHTQVA 502

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G +++I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +   
Sbjct: 503 ALKKGVEIVIATPGRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPD 562

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL+FSAT   E+Q ++ +FL +  ++ + +   TA       V     + KK  +L  
Sbjct: 563 RQTLMFSATWPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERML-S 621

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L S    +  I+F   +K V +L   L+  GF    IHGN  Q  R  +LS FK G + 
Sbjct: 622 FLGSVGRDEKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVP 681

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +M+A+D+A+RGLDI D+ +V N+D PN  E YIHRIGRT RAG  G +++L+  ++ +  
Sbjct: 682 IMIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLA 741

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           + + K++ +    +  +LS+L+     +  +  ++ +K +P P  S
Sbjct: 742 NELIKVLTEAKQKIPIELSNLS-----VTPSTSSNTKKFSPYPTYS 782


>gi|170039965|ref|XP_001847786.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167863566|gb|EDS26949.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 942

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 147/452 (32%), Positives = 242/452 (53%), Gaps = 24/452 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           +A  G++ K    +   G+ KPTPIQ + IP V+   D+ GIA+TG+GKT +F+LPM   
Sbjct: 283 WAHCGVTRKEFEVLRKLGFEKPTPIQCQAIPAVMSGRDLIGIAKTGSGKTLAFILPMFRH 342

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + +        P  +I+ PTREL  Q+  + +K+ K+ NL    + GG     Q  +L+
Sbjct: 343 VLDQPPLEEAEGPIAIIMSPTRELCMQIGKDIKKFAKSLNLRAVCVYGGTGISEQIAELK 402

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   +   
Sbjct: 403 RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNIRPD 462

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSAT   +++ ++   L+ P  I+V   S   + +E   V    +   K   L +
Sbjct: 463 RQTVMFSATFPRQMEALARRILKKPVEIQVGGRSVVCKEVEQHVVVL--EEDAKFFKLLE 520

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL     + + I+F ++++N   L   L K  +   ++HG IDQ  R   + +FK+G ++
Sbjct: 521 LLGLYQELGSIIVFVDKQENADILLKDLMKASYPCMSLHGGIDQFDRDSTIIDFKQGRVK 580

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  E  ++ 
Sbjct: 581 LLIATSVAARGLDVKQLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAWTFLTHEQGRYS 640

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI-----------PQKSTGF 406
             I + +E     +  DL  L    E     Q    +K +              Q++   
Sbjct: 641 GDIIRALELSGGTIPDDLRQL---WETYKTTQEEQGKKVHTGGGFSGKGFKFDEQEAAAV 697

Query: 407 DRRKKNYSSQKSHIPLKESEKISKLQQDIQEN 438
           + RKK    QK+ + L++S+    L+QDI ++
Sbjct: 698 NERKK---MQKAALGLQDSDDDEDLEQDIDQH 726


>gi|323307275|gb|EGA60555.1| Ded1p [Saccharomyces cerevisiae FostersO]
          Length = 605

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 139/362 (38%), Positives = 205/362 (56%), Gaps = 19/362 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRA--------- 68
           A + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+   + G +         
Sbjct: 161 ARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSF 220

Query: 69  --RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
             R   P  +I+ PTRELA Q+ D  +K+     +   ++ GG P   Q +++ERG D+L
Sbjct: 221 YQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLL 280

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----RQTLL 182
           + TPGR+ D   RGK+ + N++ LV+DEADRMLDMGF P I++I      T    RQTL+
Sbjct: 281 VATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLM 340

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT   ++Q ++ +FL +   + V    ST+E I    +    Q  KK ALL  L  S 
Sbjct: 341 FSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQ-DKKSALLDLLSAST 399

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D +   +IF   K+    L   L  Q F   AIHG+  Q  R + L+ F+ G   L+VA+
Sbjct: 400 DGLT--LIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVAT 457

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
            +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A      E+   +  + +
Sbjct: 458 AVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHE 517

Query: 363 LI 364
           ++
Sbjct: 518 IL 519


>gi|296121937|ref|YP_003629715.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
 gi|296014277|gb|ADG67516.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
          Length = 395

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 215/369 (58%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS   + AV   G+  P+PIQ   +PL L   DV G A+TG+GKTA+FVLP   I
Sbjct: 8   FEDLGLSETTLAAVNKMGFATPSPIQAAFVPLALSGKDVIGQARTGSGKTAAFVLP---I 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+  A    P+ L+L PTREL+ Q+A+   +    + L     +GG     Q   L++G
Sbjct: 65  LERVDAEKGYPQALVLTPTRELSQQIAEEASRLSLKHPLRSVCCVGGRNIRPQITDLKKG 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A ++I TPGRI+D   RG+L  + ++++V+DEADRMLD+GF P I+ I    P  RQTLL
Sbjct: 125 AQLVIGTPGRIIDLMQRGELDTSRLKMVVLDEADRMLDIGFRPDIERILRKCPTERQTLL 184

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+   + ++++ ++ +P+R++V+   + ++     F     Q  K   L++ L  SQ
Sbjct: 185 LSATLPAPVARLAQKYMNDPERVDVSHIGADSQNSITQFYVPVDQDRKFRTLIRVL--SQ 242

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  +  ++F   K+    +      +   +  IHG++ Q  R  +LS F++G ++L++A+
Sbjct: 243 EKPQQVLVFTRTKRGAEEVYRKFSGRLPRIGFIHGDLSQNLREGVLSRFRDGRLRLLIAT 302

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG---RHGKAFTLVAKEDIKHIDA 359
           D+  RG+DI  + H+ N+DVP   ++Y+HRIGRTGR     + G A T V +E+   +  
Sbjct: 303 DVMGRGIDISGISHIVNYDVPMDCDDYVHRIGRTGRLSSTEKIGSAITFVTREEGDQLTN 362

Query: 360 IEKLIEKKV 368
           IE  + K++
Sbjct: 363 IEIRVNKEL 371


>gi|212543663|ref|XP_002151986.1| RNA helicase (Dbp), putative [Penicillium marneffei ATCC 18224]
 gi|210066893|gb|EEA20986.1| RNA helicase (Dbp), putative [Penicillium marneffei ATCC 18224]
          Length = 554

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 207/373 (55%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ KPT IQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 127 FDEAGFPNYVLSEVKAQGFAKPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 186

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  LIL PTRELA Q+     K+G++  +    + GG+P   Q 
Sbjct: 187 INAQPLLSPGDG----PIVLILAPTRELAVQIQTEISKFGRSSRIRNTCVYGGVPKGPQI 242

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 243 RDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 302

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT ++SAT   E+++++ +FL +  ++ + +   +A       V   + + K+  +++
Sbjct: 303 DRQTCMWSATWPKEVRQLASDFLNDFIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 362

Query: 237 QLLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L +  +  KN  +IF   K+   ++   L + G+   +IHG+  Q  R  +L  FK G 
Sbjct: 363 HLEKIMEDRKNKCLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLQEFKNGK 422

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A T    ++ K
Sbjct: 423 SPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSK 482

Query: 356 HI-DAIEKLIEKK 367
              D +  L E K
Sbjct: 483 QARDLVTILSEAK 495


>gi|160380641|sp|A6ZP47|DED1_YEAS7 RecName: Full=ATP-dependent RNA helicase DED1
 gi|151945294|gb|EDN63537.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
 gi|190407515|gb|EDV10782.1| hypothetical protein SCRG_01592 [Saccharomyces cerevisiae RM11-1a]
 gi|207341041|gb|EDZ69208.1| YOR204Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256269590|gb|EEU04872.1| Ded1p [Saccharomyces cerevisiae JAY291]
 gi|323335425|gb|EGA76711.1| Ded1p [Saccharomyces cerevisiae Vin13]
 gi|323352139|gb|EGA84676.1| Ded1p [Saccharomyces cerevisiae VL3]
          Length = 604

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 139/362 (38%), Positives = 205/362 (56%), Gaps = 19/362 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRA--------- 68
           A + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+   + G +         
Sbjct: 160 ARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSF 219

Query: 69  --RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
             R   P  +I+ PTRELA Q+ D  +K+     +   ++ GG P   Q +++ERG D+L
Sbjct: 220 YQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLL 279

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----RQTLL 182
           + TPGR+ D   RGK+ + N++ LV+DEADRMLDMGF P I++I      T    RQTL+
Sbjct: 280 VATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLM 339

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT   ++Q ++ +FL +   + V    ST+E I    +    Q  KK ALL  L  S 
Sbjct: 340 FSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQ-DKKSALLDLLSAST 398

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D +   +IF   K+    L   L  Q F   AIHG+  Q  R + L+ F+ G   L+VA+
Sbjct: 399 DGLT--LIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVAT 456

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
            +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A      E+   +  + +
Sbjct: 457 AVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHE 516

Query: 363 LI 364
           ++
Sbjct: 517 IL 518


>gi|6324778|ref|NP_014847.1| Ded1p [Saccharomyces cerevisiae S288c]
 gi|118411|sp|P06634|DED1_YEAST RecName: Full=ATP-dependent RNA helicase DED1; AltName: Full=DEAD
           box protein 1
 gi|3647|emb|CAA40546.1| Ded1p (Spp81p) [Saccharomyces cerevisiae]
 gi|1420479|emb|CAA99419.1| DED1 [Saccharomyces cerevisiae]
 gi|285815083|tpg|DAA10976.1| TPA: Ded1p [Saccharomyces cerevisiae S288c]
          Length = 604

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 139/362 (38%), Positives = 205/362 (56%), Gaps = 19/362 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRA--------- 68
           A + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+   + G +         
Sbjct: 160 ARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSF 219

Query: 69  --RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
             R   P  +I+ PTRELA Q+ D  +K+     +   ++ GG P   Q +++ERG D+L
Sbjct: 220 YQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLL 279

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----RQTLL 182
           + TPGR+ D   RGK+ + N++ LV+DEADRMLDMGF P I++I      T    RQTL+
Sbjct: 280 VATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLM 339

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT   ++Q ++ +FL +   + V    ST+E I    +    Q  KK ALL  L  S 
Sbjct: 340 FSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQ-DKKSALLDLLSAST 398

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D +   +IF   K+    L   L  Q F   AIHG+  Q  R + L+ F+ G   L+VA+
Sbjct: 399 DGLT--LIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVAT 456

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
            +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A      E+   +  + +
Sbjct: 457 AVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHE 516

Query: 363 LI 364
           ++
Sbjct: 517 IL 518


>gi|115456051|ref|NP_001051626.1| Os03g0805200 [Oryza sativa Japonica Group]
 gi|75326432|sp|Q75HJ0|RH37_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 37; AltName:
           Full=OsPL10a
 gi|41469394|gb|AAS07217.1| putative helicase [Oryza sativa Japonica Group]
 gi|108711635|gb|ABF99430.1| ATP-dependent RNA helicase An3, putative, expressed [Oryza sativa
           Japonica Group]
 gi|113550097|dbj|BAF13540.1| Os03g0805200 [Oryza sativa Japonica Group]
 gi|222626000|gb|EEE60132.1| hypothetical protein OsJ_13017 [Oryza sativa Japonica Group]
          Length = 637

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 136/362 (37%), Positives = 203/362 (56%), Gaps = 23/362 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++ L   +   +    YVKPTP+Q   IP+ +   D+   AQTG+GKTA+F  P+++ 
Sbjct: 176 FAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISG 235

Query: 63  LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +   R       +R   P  LIL PTREL+ Q+ +   K+     + V +  GG P   Q
Sbjct: 236 IMSSRPPQRPRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGGAPIHQQ 295

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++LERG ++L+ TPGR++D   R ++ +  ++ L +DEADRMLDMGF P I+ I   + 
Sbjct: 296 LRELERGVEILVATPGRLMDLLERARVSLQMVKYLALDEADRMLDMGFEPQIRKIVEQMD 355

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQT+LFSAT   E+Q+++ +FL +   + V    S+ + I       +   + K
Sbjct: 356 MPPRGVRQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIAQRV--EFVLEADK 413

Query: 232 CALLQQLLQSQDTMKNG--------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + L  LL +Q    NG        ++F   K+    L + L   GF   +IHG+  Q+ 
Sbjct: 414 RSYLMDLLHAQKA--NGTHGKQALTLVFVETKRGADALENWLYTNGFPATSIHGDRTQQE 471

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G
Sbjct: 472 REYALRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSG 531

Query: 344 KA 345
            A
Sbjct: 532 LA 533


>gi|254508223|ref|ZP_05120347.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 16]
 gi|219548840|gb|EED25841.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 16]
          Length = 403

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 131/365 (35%), Positives = 210/365 (57%), Gaps = 5/365 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           + L P ++ A+ + GY +PT IQ + IP  L   D+   A TGTGKTA+FVLP L  L+ 
Sbjct: 1   MELDPNLLLAIEEMGYDRPTQIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQYLQD 60

Query: 66  GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
              R   P R LIL PTRELA QVAD      K+  L +  + GG+ ++     L +  D
Sbjct: 61  FPRRKPGPARILILTPTRELAMQVADQARALAKHTKLNIFTITGGVQYQEHADILGKTQD 120

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGR++++ N  +     IE LV+DEADRMLDMGF P +  +++   + +QTLLFS
Sbjct: 121 IVVATPGRLMEYINAERFDCRAIEWLVLDEADRMLDMGFGPTVDRLSNECRWRKQTLLFS 180

Query: 185 ATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           AT+  + ++  + + L++P  I+        + I   +       + K  LL++++  Q 
Sbjct: 181 ATLEGKGVEGFTADLLKDPADIDAEPSRRERKKIAQWY-HRADDMNHKLELLKKIITDQ- 238

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +  I+F   ++ +  L   LEK       I G + Q  R   ++ F++GT+ +++A+D
Sbjct: 239 -AERSIVFLKTRERLGELRTELEKAQIPCAWIQGEMPQDRRNNAIARFRDGTVNVLLATD 297

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A +LV   D   +D + + 
Sbjct: 298 VAARGIDLPDVSHVINYDMPRSADVYLHRIGRTARAGKKGNAVSLVEAHDQPMLDRVARY 357

Query: 364 IEKKV 368
           +++ +
Sbjct: 358 VKEDI 362


>gi|161407972|ref|YP_270752.2| ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea 34H]
          Length = 417

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 135/368 (36%), Positives = 213/368 (57%), Gaps = 4/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F    L  +++ ++   GY KPT IQ   IP  +   DV   A TGTGKTA+F+LP+   
Sbjct: 2   FEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQH 61

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA Q+ ++ E+  +   +   ++ GG+ + +    L  
Sbjct: 62  LLDYPRTKPGFPRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHADILTS 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+L+ TPGR+L++    +     IEILV+DEADRMLD+GF   I  I +   + +QT+
Sbjct: 122 TTDILVATPGRLLEYIENEQFDAREIEILVLDEADRMLDLGFSETINRIVAEARWRKQTM 181

Query: 182 LFSATM-TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+ +  +Q  +E  L  P  +E + PS   + + H ++      + K  LL   L+
Sbjct: 182 LFSATLESPGVQLFAEEVLNEPVFLE-SKPSRKEKAVIHQWLHLADDANHKLNLLVNTLK 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+ ++  ++F N+++ V  L   L  +      + G + Q  R K +  FK+G ++++V
Sbjct: 241 -QEGVERTVVFANKRETVQYLSGKLYAEELPCVWLEGKMPQDKRNKAIERFKKGEVKVLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+ HV NFD+P + + YIHRIGRTGRAG+ G A +LV   D+  I  I
Sbjct: 300 ATDVAARGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLVEAHDMGVIGKI 359

Query: 361 EKLIEKKV 368
           E+  ++++
Sbjct: 360 ERYTKERL 367


>gi|24584994|ref|NP_609888.2| CG10333 [Drosophila melanogaster]
 gi|22946759|gb|AAF53680.2| CG10333 [Drosophila melanogaster]
 gi|60677727|gb|AAX33370.1| RH55640p [Drosophila melanogaster]
          Length = 822

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 133/376 (35%), Positives = 208/376 (55%), Gaps = 35/376 (9%)

Query: 10  PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
           PK +  ++D  GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L+ ++    
Sbjct: 402 PKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPK 461

Query: 69  RVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             R+      P  +I+ PTRELA Q+ +   K+G+   +   +++GG+  E Q  +L  G
Sbjct: 462 IERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLG 521

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177
            +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P T     
Sbjct: 522 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 581

Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
                               RQT++F+ATM   +++++  +L+ P  + + +     E  
Sbjct: 582 TEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERT 641

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
           E   V    +  K+  L++ L +  D     IIF NQKK    L   LEK G++ C +HG
Sbjct: 642 EQ-IVYMMGENDKRKKLMEILSRKIDP--PVIIFVNQKKGADVLAKGLEKLGYNSCTLHG 698

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
              Q  R   L+  K G   ++VA+D+A RG+DI DV  V N+D+    E+Y HRIGRTG
Sbjct: 699 GKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTG 758

Query: 338 RAGRHGKAFTLVAKED 353
           RAG+ G A + V K+D
Sbjct: 759 RAGKTGCAISFVTKDD 774


>gi|195344854|ref|XP_002038991.1| GM17282 [Drosophila sechellia]
 gi|194134121|gb|EDW55637.1| GM17282 [Drosophila sechellia]
          Length = 822

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 133/376 (35%), Positives = 208/376 (55%), Gaps = 35/376 (9%)

Query: 10  PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
           PK +  ++D  GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L+ ++    
Sbjct: 402 PKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPK 461

Query: 69  RVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             R+      P  +I+ PTRELA Q+ +   K+G+   +   +++GG+  E Q  +L  G
Sbjct: 462 IERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLG 521

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177
            +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P T     
Sbjct: 522 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 581

Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
                               RQT++F+ATM   +++++  +L+ P  + + +     E  
Sbjct: 582 TEEAEDETKLMENFYSKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERT 641

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
           E   V    +  K+  L++ L +  D     IIF NQKK    L   LEK G++ C +HG
Sbjct: 642 EQ-IVYMMGENDKRKKLMEILSRKIDP--PVIIFVNQKKGADVLAKGLEKLGYNSCTLHG 698

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
              Q  R   L+  K G   ++VA+D+A RG+DI DV  V N+D+    E+Y HRIGRTG
Sbjct: 699 GKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTG 758

Query: 338 RAGRHGKAFTLVAKED 353
           RAG+ G A + V K+D
Sbjct: 759 RAGKTGCAISFVTKDD 774


>gi|317480121|ref|ZP_07939231.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
 gi|316903668|gb|EFV25512.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
          Length = 405

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 124/346 (35%), Positives = 210/346 (60%), Gaps = 7/346 (2%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELA 85
           PIQ K+IP++L+  D+  +AQTGTGKTA+++LP+L  L +G         +++ PTRELA
Sbjct: 3   PIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPILNKLSEGGHPADAINCIVMAPTRELA 62

Query: 86  AQVADNFEKYGKNYNLTVALLIGG---IPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142
            Q+    E +     ++   + GG   + FE Q + L  GADV+I TPGR++ H + G +
Sbjct: 63  QQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKRGLTLGADVVIATPGRLIAHLSLGYV 122

Query: 143 LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNP 202
            ++ +   ++DEADRMLDMGF   I  I   +P  RQT++FSATM  ++Q+++ N L NP
Sbjct: 123 DLSRVSYFILDEADRMLDMGFYDDIMQIVKFLPKERQTIMFSATMPAKIQQLAGNILNNP 182

Query: 203 KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLC 262
             +++       + ++  +V    Q   K  +++ L  +++T +  IIF + K  V  + 
Sbjct: 183 AEVKLAVSKPAEKIVQAAYVCYENQ---KLGIIRSLF-AEETPERVIIFASSKLKVKEVT 238

Query: 263 HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322
            +L++   +V  +H +++Q  R +++  FK G I ++VA+D+ ARG+DI D+  V N+DV
Sbjct: 239 KALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVARGIDIDDIRLVINYDV 298

Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           P+ +E+Y+HRIGRT RA   G A T V++++  +   IEK +++ +
Sbjct: 299 PHDSEDYVHRIGRTARANNDGVAITFVSEKEQGNFKNIEKFLDRDI 344


>gi|296107675|ref|YP_003619376.1| ATP-independent RNA helicase DbpA [Legionella pneumophila 2300/99
           Alcoy]
 gi|295649577|gb|ADG25424.1| ATP-independent RNA helicase DbpA [Legionella pneumophila 2300/99
           Alcoy]
          Length = 435

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 212/349 (60%), Gaps = 7/349 (2%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84
           TPIQ++++P++L+  D+   A+TG+GKTA+F L +L  L+     V+    L+L PTREL
Sbjct: 2   TPIQMQSLPIILRNEDIIAQAKTGSGKTAAFALCLLNNLKISFFAVQ---ALVLCPTREL 58

Query: 85  AAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           A QV+    +      N+ +  L GGIP + Q   L  GA +++ TPGRIL H     L 
Sbjct: 59  AEQVSQAIRRLACLMPNVKIINLSGGIPMQPQLGSLRHGAHIIVGTPGRILKHLKNASLD 118

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           ++ ++ LV+DEADRMLDMGF   I+NI S+ P  RQTLLFSAT  +E++++S+ F+++PK
Sbjct: 119 LSQVKALVLDEADRMLDMGFFDDIKNIISICPKQRQTLLFSATYPEEIKRLSKQFMKDPK 178

Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
            + V TP    +  +H +    ++ ++K  LL+ LL     + + +IFCN K+  V +  
Sbjct: 179 EVHVVTPPEEIDIEQHFY--EVSRQAQKFPLLKSLLLHYRPV-SVLIFCNTKQQTVEVTD 235

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
            L  +GFS  A++G+++Q  R   +  F   +  ++VA+D+AARGLDI ++  V NFD+ 
Sbjct: 236 QLINEGFSAIALNGDMEQIERDLAVLRFANQSCSILVATDVAARGLDIKELSAVINFDLA 295

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
              + +IHRIGRTGRAG  G A ++V   D + I AIE      + W N
Sbjct: 296 FDHDIHIHRIGRTGRAGSKGIALSIVTPADAQRICAIEDNYPHPIHWGN 344


>gi|262196937|ref|YP_003268146.1| DEAD/DEAH box helicase [Haliangium ochraceum DSM 14365]
 gi|262080284|gb|ACY16253.1| DEAD/DEAH box helicase domain protein [Haliangium ochraceum DSM
           14365]
          Length = 908

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 128/354 (36%), Positives = 205/354 (57%), Gaps = 8/354 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL P+++ A+ + GY +P P+Q      ++   DV   ++TG+GKTA F +P++  
Sbjct: 64  FAELGLQPELLQALEEMGYDRPMPVQAAVFQPLMNGRDVMVQSRTGSGKTAGFGIPVVQH 123

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++   A  +  + LIL PTRELA QV+    +  K   L +  + GG P + Q   L  G
Sbjct: 124 ID---AASKGAQALILAPTRELALQVSREIAQLAKPKGLHIEPIYGGAPIKPQMDALAAG 180

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TRQT 180
           A V+  TPGR+LDH  R  L   NI +L++DE D ML MGF   I+ I   +P    RQT
Sbjct: 181 AQVVSGTPGRVLDHLRRKTLDPKNIRMLILDECDEMLSMGFQEEIERIIEHLPAKENRQT 240

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ DE+Q+++   + +P+ I ++T + + + I+H +         +  L     +
Sbjct: 241 VLFSATIPDEIQRIARRHMTDPEEISLSTGNISVDDIDHSYYVVSGVARTRDLLKVLRAE 300

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S D+    IIFCN +++   +   L+ QG+   AI  ++ QR R +++   ++  +  +V
Sbjct: 301 SPDS---AIIFCNTREDTNTVAKFLQGQGYDAEAISSDLTQRDRERVMKRMRDRNLDFLV 357

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           A+D+AARG+DI D+ HV N+  P+  E Y+HR GRTGRAG+ G A +LV   ++
Sbjct: 358 ATDVAARGIDISDLSHVINYTFPDSPEVYVHRTGRTGRAGKSGVAISLVGPREL 411


>gi|262168988|ref|ZP_06036682.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|262022687|gb|EEY41394.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
          Length = 448

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 141/389 (36%), Positives = 212/389 (54%), Gaps = 12/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   + PR LIL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 61  HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            RG   ++ TPGR+ DH +   L +  +E LV+DEADRMLD+GF   ++ I +     R 
Sbjct: 121 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   ++  ++   L  PKRI +   S   + I +H ++  +  +  K ALL 
Sbjct: 181 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDH--KEALLD 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L   +  +  IIF   + +   L   L K      A+ GN++Q  R  I+  F+    
Sbjct: 239 RILADAE-YRQVIIFTATRADTDRLTEKLNKNNLKAVALSGNLNQTQRNTIMGQFERAVF 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++V +D+A+RGLDIP V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D + 
Sbjct: 298 KILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWES 357

Query: 357 IDAIEKLIEKKVDW-----LNGDLSSLNP 380
              +E  +++++ +     L G    L P
Sbjct: 358 FKRVEAFLQQEIQFEVLAGLEGKFKGLKP 386


>gi|255950466|ref|XP_002566000.1| Pc22g21030 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593017|emb|CAP99391.1| Pc22g21030 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 552

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 207/373 (55%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT S+ LP +  
Sbjct: 128 FDEAGFPAYVLSEVKAQGFDAPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVH 187

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 188 INAQPLLAPGDG----PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQI 243

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 244 RDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 303

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT ++SAT   ++++++ +FL +  ++ V +   +A       V   A + K+  +++
Sbjct: 304 DRQTCMWSATWPKDVRQLASDFLSDYIQVNVGSTDLSANHRITQIVEVVADFEKRDKMIK 363

Query: 237 QLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L +  +D     IIF   K+   ++   L + G+   +IHG+  Q  R  +L+ FK+G 
Sbjct: 364 HLEKIMEDRSNKCIIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKQGK 423

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRT RAG  G A T    ++ K
Sbjct: 424 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTARAGAKGTAITFFTTDNSK 483

Query: 356 HI-DAIEKLIEKK 367
              D I  L E K
Sbjct: 484 QARDLITILTEAK 496


>gi|284921218|emb|CBG34284.1| ATP-independent RNA helicase [Escherichia coli 042]
          Length = 457

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 140/377 (37%), Positives = 219/377 (58%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HGN++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGNLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W    ++S   PLE
Sbjct: 363 KLNWQTPPVNSSIVPLE 379


>gi|219872069|ref|YP_002476444.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis SH0165]
 gi|219692273|gb|ACL33496.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis SH0165]
          Length = 441

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 135/366 (36%), Positives = 212/366 (57%), Gaps = 4/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +L LSP+++ A+   GY +PT IQ +TIP  ++  DV G A TGTGKTA+F+LP L  
Sbjct: 7   FEELDLSPELLQALEKKGYKRPTAIQQETIPPAMEGRDVLGSAPTGTGKTAAFLLPALQH 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVA+  E+  +  +L +A + GG+ ++   +    
Sbjct: 67  LLDHPRRKPGPPRILILTPTRELAMQVAEQAEELTQFTSLKIATITGGVAYQNHGEVFNT 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+  +         ++EIL+ DEADRML MGF    + I +   + + T 
Sbjct: 127 NQDLVVATPGRLQQYIQEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRWRKYTW 186

Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  EL    +E  L +P +I+        + I+  +         K  LL +L+ 
Sbjct: 187 LFSATLEGELLVDFAERILNDPVQIDAEPSRRERKKIQQWYYHA-DNLEHKTKLLARLI- 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  ++  I+F  ++++V  L  +L K+G     + G + Q  R + ++  K+G + ++V
Sbjct: 245 SEFEIERSIVFVRRRESVRELSETLRKRGIRSTYLEGEMAQTQRNQAIARLKDGVVNVLV 304

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV  V NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D K +  I
Sbjct: 305 ATDVAARGIDIDDVDFVINFDLPYSADTYLHRIGRTARAGKKGSAVSLVEAHDYKLLGKI 364

Query: 361 EKLIEK 366
           ++  E+
Sbjct: 365 KRYTEE 370


>gi|110834947|ref|YP_693806.1| ATP-dependent RNA helicase DbpA [Alcanivorax borkumensis SK2]
 gi|110648058|emb|CAL17534.1| ATP-dependent RNA helicase DbpA [Alcanivorax borkumensis SK2]
          Length = 459

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 144/380 (37%), Positives = 222/380 (58%), Gaps = 12/380 (3%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA L L+P+++ A LDA GYV  TP+Q +++PL+L+ HDV   A TG+GKTA+F L +L 
Sbjct: 6   FASLPLTPEML-ANLDALGYVTMTPVQAQSLPLLLKGHDVIAQASTGSGKTAAFGLGLLH 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            L     R    + L+L PTRELA QVA    +  +   N+ V  L GG P   Q   LE
Sbjct: 65  PLNP---RYYGCQALVLCPTRELADQVAVEIRRLARGPGNIKVLTLCGGQPIGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+L H ++G L ++ +  LV+DEADRMLDMGF   I  +    P  RQT
Sbjct: 122 HGAQIVVGTPGRVLKHLSKGTLSLDGLNTLVLDEADRMLDMGFYDSIAEVIRQTPPRRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++++E F+ NP+ +EV T    ++  +  +     Q  +  A      +
Sbjct: 182 LLFSATYPPGIKQLAETFMSNPQHVEVETLHDNSQIEQRYYEVEPFQREEAVASAIACFR 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++FC  K+   ++ + L +QG S   ++ +++QR R ++L+ F   ++ ++V
Sbjct: 242 PVSC----VVFCVTKQQCQDVVNQLCRQGLSAMVLNSDLEQRERDEVLTLFANRSLSVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V N ++ +  + +IHR+GRTGRAG  G A  LVA  + +   AI
Sbjct: 298 ATDVAARGLDIDNLDMVINAELSHEPQTHIHRVGRTGRAGEKGLAINLVAPRESRRAIAI 357

Query: 361 EKLIEKKVDWLNGDLSSLNP 380
           E+L    ++W    L+SL P
Sbjct: 358 EQLQGAPLNW--HPLNSLKP 375


>gi|331662753|ref|ZP_08363676.1| ATP-independent RNA helicase DbpA [Escherichia coli TA143]
 gi|331061175|gb|EGI33139.1| ATP-independent RNA helicase DbpA [Escherichia coli TA143]
          Length = 457

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 140/377 (37%), Positives = 219/377 (58%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HGN++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGNLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W    ++S   PLE
Sbjct: 363 KLNWQTPPVNSSIVPLE 379


>gi|302782315|ref|XP_002972931.1| hypothetical protein SELMODRAFT_98552 [Selaginella moellendorffii]
 gi|300159532|gb|EFJ26152.1| hypothetical protein SELMODRAFT_98552 [Selaginella moellendorffii]
          Length = 534

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 134/387 (34%), Positives = 210/387 (54%), Gaps = 21/387 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA+      V+  VL AG+ +PT IQ +  P+ L+  D+ G+A+TG+GKT +++LP +  
Sbjct: 92  FAEASFPDYVLQEVLKAGFKEPTAIQAQGWPMALKGRDLVGLAETGSGKTLAYLLPAIVH 151

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L  G      P  L+L PTRELA Q+     K+G +  +    + GG P   Q 
Sbjct: 152 VNAQPYLAPGDG----PIVLVLAPTRELAVQIQQESAKFGSSSKIKSTCIYGGAPKGPQI 207

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+RG +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 208 RDLQRGVEIVIATPGRLIDMLEGRHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRP 267

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS-----STAETIEHCFVATYAQYSKK 231
            RQTL +SAT   ++++++  FL +P ++ + + S     S A+ +E   V  Y +Y K 
Sbjct: 268 DRQTLYWSATWPKDVEQLANQFLHDPYKVTIGSSSLKANHSIAQHVE--VVNDYEKYQKL 325

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL + +     +    IF   K+    +   L  +G+   +IHG+  Q  R  +LS F
Sbjct: 326 IKLLDEFMDGGKIL----IFMETKRGCDQVTKQLRMEGWPALSIHGDKSQAERDWVLSEF 381

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   +M A+D+AARGLD+ D+ +V N+D P   E+Y+HRIGRTGRAG  G A+T    
Sbjct: 382 KTGKSPIMTATDVAARGLDVKDIRYVINYDFPGSCEDYVHRIGRTGRAGAKGTAYTFFTV 441

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            + KH   +  ++ +    +  +L S+
Sbjct: 442 SNAKHARELVSILSEAGQRITPELQSM 468


>gi|195401282|ref|XP_002059243.1| GJ16136 [Drosophila virilis]
 gi|194156117|gb|EDW71301.1| GJ16136 [Drosophila virilis]
          Length = 523

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 217/369 (58%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLGL+  +  A  +  +  P+ IQ + IP+ LQ  DV G+A+TG+GKT +F LP+L
Sbjct: 64  LTWKDLGLNDTLCKACEELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPIL 123

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      L+L PTRELA Q+ + FE  G    +   +++GG+   AQ  +L 
Sbjct: 124 HALLENPQRYF---ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 180

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGR++DH  N     +  I+ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 181 KKPHIIIATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 240

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L++P ++EV+    T + ++  ++    +Y  K   L  +L
Sbjct: 241 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYIFIPVKY--KDVYLVHIL 298

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK     ++
Sbjct: 299 -NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 357

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR G+A T+V + DI+    
Sbjct: 358 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITMVTQYDIELYQR 417

Query: 360 IEKLIEKKV 368
           IE+L+ K++
Sbjct: 418 IEQLLGKQL 426


>gi|262066543|ref|ZP_06026155.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379777|gb|EFE87295.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium
           periodonticum ATCC 33693]
          Length = 528

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 212/372 (56%), Gaps = 16/372 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F +LGL  K++  +   GY  PTPIQ  TIP +L+   D+ G AQTGTGKTA+F LP++
Sbjct: 9   EFRELGLGEKILKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E         + ++L PTRELA QVA+       +  + V  + GG   + Q K ++
Sbjct: 69  ENFEHSDH----IQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR++D   R  L +N+++  V+DEAD ML+MGF+  I+ I +     ++ 
Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFVLDEADEMLNMGFVEDIEKILTFTNDDKRM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
           L FSATM  E+ K+++  ++  + + V +   T +  E  +  V    ++   C ++   
Sbjct: 185 LFFSATMPPEIMKIAKTHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRII--- 241

Query: 239 LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               D  K   GIIFC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I
Sbjct: 242 ----DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKI 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T +  ++ + 
Sbjct: 298 NILVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRR 357

Query: 357 IDAIEKLIEKKV 368
           +  I+K ++K++
Sbjct: 358 LLQIQKAVKKEI 369


>gi|78485292|ref|YP_391217.1| ATP-dependent RNA helicase DbpA [Thiomicrospira crunogena XCL-2]
 gi|78363578|gb|ABB41543.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
          Length = 468

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 147/386 (38%), Positives = 223/386 (57%), Gaps = 9/386 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGL P ++  +    Y   T IQ +++P +L+  DV    +TG+GKTA+F L +L
Sbjct: 10  LAFSTLGLHPDLLSNLKTLDYHFLTDIQAQSLPPILEGKDVIAQGKTGSGKTAAFGLGVL 69

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L+     V+    L+L PTRELA QVA+   +  +   N+ V  L GG+P   Q   L
Sbjct: 70  QKLDVKNFNVQ---ALVLCPTRELADQVANEIRRLARQLQNIKVLTLCGGMPMGPQISSL 126

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA +++ TPGRI DH  + +L +  ++ILV+DEADRML+MGF P +  I   +P  RQ
Sbjct: 127 QQGAHIVVGTPGRIEDHLKKARLTLAEVKILVLDEADRMLEMGFQPSLDTIIDQLPQQRQ 186

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++ +S+  +  P R+EV +    +   +H F    +   +  AL   LL
Sbjct: 187 TLLFSATFPKQIEHISQRIMHQPVRVEVASRHDDSTITQH-FYQVDSTEQRLQALRLVLL 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q++   ++ ++FCN KK V  +  +L   GFS  A+HG+++QR R + L  F   +I ++
Sbjct: 246 QAKP--ESSVVFCNTKKEVQMVADTLRDAGFSALALHGDLEQRDRDQTLIQFANKSISIL 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           VA+D+AARGLDI  +  V NF + +  E ++HRIGRTGRAG  G A + ++ KE  K   
Sbjct: 304 VATDVAARGLDIEALDAVVNFHLAHDPEVHVHRIGRTGRAGSQGVACSFISDKESYKVAT 363

Query: 359 AIEKLIEKKVDWLNGDLSSLN-PPLE 383
             E L +        D S LN PPL+
Sbjct: 364 LAEYLGQDIQTEPLPDASLLNQPPLQ 389


>gi|323302935|gb|EGA56739.1| Ded1p [Saccharomyces cerevisiae FostersB]
          Length = 604

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 139/362 (38%), Positives = 205/362 (56%), Gaps = 19/362 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRA--------- 68
           A + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+   + G +         
Sbjct: 160 ARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSF 219

Query: 69  --RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
             R   P  +I+ PTRELA Q+ D  +K+     +   ++ GG P   Q +++ERG D+L
Sbjct: 220 YQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLL 279

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----RQTLL 182
           + TPGR+ D   RGK+ + N++ LV+DEADRMLDMGF P I++I      T    RQTL+
Sbjct: 280 VATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLM 339

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT   ++Q ++ +FL +   + V    ST+E I    +    Q  KK ALL  L  S 
Sbjct: 340 FSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQ-DKKSALLDLLSAST 398

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D +   +IF   K+    L   L  Q F   AIHG+  Q  R + L+ F+ G   L+VA+
Sbjct: 399 DGLT--LIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVAT 456

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
            +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A      E+   +  + +
Sbjct: 457 AVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHE 516

Query: 363 LI 364
           ++
Sbjct: 517 IL 518


>gi|304409763|ref|ZP_07391383.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307304119|ref|ZP_07583872.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304352281|gb|EFM16679.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306913017|gb|EFN43440.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 451

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 209/370 (56%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L  +++ ++   G  +PT IQ + +P+ L   D+   ++TG+GKT +F+LP L
Sbjct: 1   MQFTDFSLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   R+   R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRVISTRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            +    ++ TPGRI DH  +  L +N +E+LV+DEADRMLD+GF P ++ I       R 
Sbjct: 121 AKEPHFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAADHKRR 180

Query: 179 QTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+  DE+  ++   L+NP  + +    S    I +  F+  +  +  K ALL 
Sbjct: 181 QTLMFSATLDHDEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDH--KEALLA 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL+ + T K  IIF   + +   L   L +QGF+  A+ G++ Q +R +I+  F  G  
Sbjct: 239 RLLKDE-THKQVIIFTATRPDTERLAAKLIEQGFATAALSGDLKQAARNQIMDQFARGQQ 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +
Sbjct: 298 QVLVTTDVASRGLDLLNVSLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDN 357

Query: 357 IDAIEKLIEK 366
              ++  + K
Sbjct: 358 FKKVQVFLRK 367


>gi|285017902|ref|YP_003375613.1| ATP-independent RNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283473120|emb|CBA15626.1| probable atp-independent rna helicase protein [Xanthomonas
           albilineans]
          Length = 458

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 144/381 (37%), Positives = 213/381 (55%), Gaps = 9/381 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  L LSP +   +   GY   TP+Q +++P +L  HDV   A TG+GKTA+F L +L 
Sbjct: 3   DFDILSLSPALAPGIDALGYTTMTPVQAQSLPPILAGHDVIVQAPTGSGKTAAFGLGLLH 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+    R +    L+L PTRELA QV     K      N+ + +L GG+P   Q   LE
Sbjct: 63  KLDPALVRAQ---ALVLCPTRELADQVGKQVRKLATGIANMKLVVLTGGMPLAPQLASLE 119

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I       RQ
Sbjct: 120 AHDPQVVVGTPGRIQELARKRVLHLGGVRTLVLDEADRMLDMGFEEPIREIAGRCDKHRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT  + ++ ++   L++P  I V    S  E I+  F      Y +K A+   LL
Sbjct: 180 SLLFSATFPETIRALARELLKDPTEITVAGAESAPE-IDQQFFEVDPSYRQK-AVAGLLL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +     ++ ++FCN +K V  +  SL++ GFS  A+HG+++QR R ++L  F   +  ++
Sbjct: 238 RFAP--ESSVVFCNTRKEVDEVASSLQQFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+HG A +LVA  +++   A
Sbjct: 296 VASDVAARGLDVEDLAAVLNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRELQRAQA 355

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           +E      + W    L++  P
Sbjct: 356 LETEQSLPLRWSRAPLATARP 376


>gi|325091997|gb|EGC45307.1| ATP-dependent RNA helicase DBP2 [Ajellomyces capsulatus H88]
          Length = 544

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 211/374 (56%), Gaps = 13/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ +PT IQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 128 FDEAGFPQYVMSEVKAQGFARPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 187

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 188 INAQPLLAPGDG----PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQI 243

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 244 RDLTRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 303

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT ++SAT   ++++++++FL +  ++ + +   +A       V   +++ K+  + +
Sbjct: 304 DRQTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAK 363

Query: 237 QLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            L +  +  K+   +IF   K+   ++   L + G+   +IHG+  Q  R  +L+ FK G
Sbjct: 364 HLDRIMEDNKHSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTG 423

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A TL   ++ 
Sbjct: 424 KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNA 483

Query: 355 KHI-DAIEKLIEKK 367
           K   D +  L E K
Sbjct: 484 KQARDLVAILSESK 497


>gi|109899589|ref|YP_662844.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas atlantica T6c]
 gi|109701870|gb|ABG41790.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 412

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 140/406 (34%), Positives = 225/406 (55%), Gaps = 15/406 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  L L  ++  AV D GY +PT IQ   IP  ++  D+   A TGTGKTA+F+LP+   
Sbjct: 2   FEQLELDDELCRAVADLGYSEPTSIQQLVIPAAMEGKDILASAPTGTGKTAAFLLPVCQF 61

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R      R LIL PTRELA QV +   +  +  ++   ++ GGI +       E+
Sbjct: 62  LLDYPRRHPGSTRILILTPTRELAQQVYNQALELSRYTDIVCGVITGGINYGTDRDTFEK 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+L+ TPGR+ +H  +      +IE L++DEADRMLDMGF   +  I++   + +Q++
Sbjct: 122 NLDILVATPGRLFEHIEQESFDCRDIECLILDEADRMLDMGFSSIVNQISAEARWRKQSM 181

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALLQQLL 239
           LFSAT+    + + +++ L +P  +E+   SS  E  + H ++        K ALL+ +L
Sbjct: 182 LFSATLEGTGISRFAKDILNDP--VELEAASSRKEQGKIHQWLHIADDAKHKYALLKHIL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  +++ ++F   +  +  L   LE+ GF+VC + G + Q  R   ++ F+ G ++++
Sbjct: 240 THQ--VESAVVFVKTRDRLNELKQILERDGFTVCWLQGEMPQDKRNLSMAKFRSGEVKIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+  + HV N+D+P  A+ Y+HRIGRTGRAG  G A +LV   DI  +  
Sbjct: 298 IATDVAARGIDVESISHVINYDMPRTADVYVHRIGRTGRAGNKGTAISLVEAHDIGIVPK 357

Query: 360 IEKLIE-----KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           IE+  E     + +D L        PP ++      N A+K   IP
Sbjct: 358 IERYTEQPLKRRVIDELRPKNKEAKPPAKR---KISNKAKKAAGIP 400


>gi|256811339|ref|YP_003128708.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens
           AG86]
 gi|256794539|gb|ACV25208.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens
           AG86]
          Length = 362

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 220/367 (59%), Gaps = 22/367 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           M F++L LS  V+ A+ + G+ KPT IQ+K +PL L    ++   A+TG+GKTASF +P+
Sbjct: 1   MSFSELNLSENVLNAIKNKGFEKPTDIQMKVVPLFLNESCNIVAQARTGSGKTASFAIPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + ++++          +IL PTRELA QVAD  +    N NL +  + GG     Q K L
Sbjct: 61  IELIDEDSG----IEAIILTPTRELAIQVADEIDSLKGNKNLKITKVYGGKAIHPQIKAL 116

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++ A++++ TPGR+LDH NRG L + N++  ++DEAD ML+MGFI  ++ I +     ++
Sbjct: 117 KK-ANIVVGTPGRVLDHINRGTLNLKNVKYFILDEADEMLNMGFIEDVEKILNACNKNKR 175

Query: 180 TLLFSATMTDELQKVSENFLQNPK----RIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            LLFSATM  E+  +++ ++ + +    +I  N   S  E  E+       ++   C +L
Sbjct: 176 ILLFSATMPKEILNLAKKYMGDYEFVKAKINANIEQSYIEINEN------ERFETLCRIL 229

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +      D    G++FC  KK+  +L + L   GF   AIHG+++Q  R K++  FK+  
Sbjct: 230 K------DREFYGLVFCKTKKDTKDLANMLRDIGFKAGAIHGDLNQSQREKVIRLFKQKK 283

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I++++A+D+ +RG+D+ D+  V N+ +P   E+Y+HRIGRTGRAG+ G A +++ + + +
Sbjct: 284 IKILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGMAISIINRREYR 343

Query: 356 HIDAIEK 362
            +  IE+
Sbjct: 344 KLKHIER 350


>gi|242019547|ref|XP_002430222.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212515318|gb|EEB17484.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 763

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 135/355 (38%), Positives = 208/355 (58%), Gaps = 7/355 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA  G    ++  +  + Y  PTPIQ + +P  L   D+ GIA+TG+GKTA+FV PML  
Sbjct: 271 FAYFGFDEALMKVIRKSEYTTPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFVWPMLIH 330

Query: 62  ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++   +    P  LIL PTREL+ Q+    +K+GK YN+ V    GG     Q+K LE
Sbjct: 331 IMDQKELKPGDGPIGLILAPTRELSQQIYSEAKKFGKVYNIQVICCYGGGSKWEQSKALE 390

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA++++ TPGR++D        +  +  LV+DEADRM DMGF P +++I + V   RQT
Sbjct: 391 NGAEIVVATPGRMIDLIKMKATNLKRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQT 450

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT   ++++++   L +P RI         E +    +    Q +K   L   +++
Sbjct: 451 LLFSATFKKKVERLARVVLTDPIRIVQGDVGEANEDVIQNVLILPNQAAKFMWLTSHIVE 510

Query: 241 SQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               + NG  +IF  +K N   + ++L+ + F V  +HG++DQ  R K+++ FK+  + +
Sbjct: 511 ---FLSNGSLLIFVTKKVNAEEVANNLKLKEFDVLLLHGDMDQIERNKVITQFKKKEVSI 567

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +VA+D+AARGLDIP +  V N+D+    + + HRIGRTGRAG  G A+TLV  +D
Sbjct: 568 LVATDVAARGLDIPHIKTVVNYDIARDIDTHTHRIGRTGRAGERGYAYTLVLNQD 622


>gi|126173892|ref|YP_001050041.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125997097|gb|ABN61172.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 451

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 209/370 (56%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L  +++ ++   G  +PT IQ + +P+ L   D+   ++TG+GKT +F+LP L
Sbjct: 1   MQFTDFSLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   R+   R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRVISTRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            +    ++ TPGRI DH  +  L +N +E+LV+DEADRMLD+GF P ++ I       R 
Sbjct: 121 AKEPHFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAADHKRR 180

Query: 179 QTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+  DE+  ++   L+NP  + +    S    I +  F+  +  +  K ALL 
Sbjct: 181 QTLMFSATLDHDEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDH--KEALLA 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL+ + T K  IIF   + +   L   L +QGF+  A+ G++ Q +R +I+  F  G  
Sbjct: 239 RLLKDE-THKQVIIFTATRPDTERLAAKLIEQGFATAALSGDLKQAARNQIMDQFARGQQ 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +
Sbjct: 298 QVLVTTDVASRGLDLLNVSLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDN 357

Query: 357 IDAIEKLIEK 366
              ++  + K
Sbjct: 358 FKKVQVFLRK 367


>gi|323346404|gb|EGA80692.1| Ded1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 608

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 139/362 (38%), Positives = 205/362 (56%), Gaps = 19/362 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRA--------- 68
           A + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+   + G +         
Sbjct: 164 ARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSF 223

Query: 69  --RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
             R   P  +I+ PTRELA Q+ D  +K+     +   ++ GG P   Q +++ERG D+L
Sbjct: 224 YQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLL 283

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----RQTLL 182
           + TPGR+ D   RGK+ + N++ LV+DEADRMLDMGF P I++I      T    RQTL+
Sbjct: 284 VATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLM 343

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT   ++Q ++ +FL +   + V    ST+E I    +    Q  KK ALL  L  S 
Sbjct: 344 FSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQ-DKKSALLDLLSAST 402

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D +   +IF   K+    L   L  Q F   AIHG+  Q  R + L+ F+ G   L+VA+
Sbjct: 403 DGLT--LIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVAT 460

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
            +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A      E+   +  + +
Sbjct: 461 AVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHE 520

Query: 363 LI 364
           ++
Sbjct: 521 IL 522


>gi|289671300|ref|ZP_06492375.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 458

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 145/381 (38%), Positives = 215/381 (56%), Gaps = 9/381 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ L LSP +   +   GY   TPIQ +++P +LQ  DV   A TG+GKTA+F L +L 
Sbjct: 3   EFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+    R +    L+L PTRELA QV     K      N+ + +L GG+P   Q   LE
Sbjct: 63  KLDPALTRAQ---ALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 119

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I S     RQ
Sbjct: 120 AHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT  D ++ ++   L++P  I V    +  E I+  F      Y +K A+   LL
Sbjct: 180 SLLFSATFPDIIRTLAREILKDPVEITVEGADNAPE-IDQQFFEVDPTYRQK-AVAGLLL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +     ++ ++FCN +K V  +  SL++ GFS  A+HG+++QR R ++L  F   +  ++
Sbjct: 238 RFNP--ESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+HG A +LVA  +   + A
Sbjct: 296 VASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARVQA 355

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           +E    + + W    L++  P
Sbjct: 356 LEAAQGQPLKWSRAPLATARP 376


>gi|310657448|ref|YP_003935169.1| ATP-dependent RNA helicase, dead/deah box family [Clostridium
           sticklandii DSM 519]
 gi|308824226|emb|CBH20264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           sticklandii]
          Length = 411

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 134/362 (37%), Positives = 212/362 (58%), Gaps = 9/362 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF +LG++ ++   +L      PT +Q+K+IP +L+  DV   AQTGTGKT +F+LP   
Sbjct: 4   DFIELGITNELSERLLKLRIDTPTQVQVKSIPYILEGRDVIAQAQTGTGKTLAFLLP--- 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ILEK        + LI+ PTRELA Q+++  +K      + +    GG   E Q  KL++
Sbjct: 61  ILEKIDVDSEDTQALIISPTRELAIQISEEAQKLISVKGINILSAYGGQDVEKQLNKLKK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILD   R  L ++ +++LV+DEAD+ML MGF+  +  I S  P  +Q +
Sbjct: 121 NIPLVVGTPGRILDLIRRESLNLSKLKMLVLDEADQMLHMGFLDEVDAIFSYTPSEKQVM 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT   E++K+++ ++  P  + V   + T + I+   V T     K+ AL + +   
Sbjct: 181 CFSATFNKEVKKLAKTYMNEPHYVSVKGQNVTLDEIDQIIVHT-TDRKKQEALCEMIDTQ 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q  M   I+FC  K+ V  L   L ++G++   +HG++ Q  R K++ +F+   IQL++A
Sbjct: 240 QPFM--AIVFCRTKRRVTALYEDLSQKGYNCDQLHGDLSQAKREKVMKDFRNAKIQLLIA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+  + H++N+D+    + YIHRIGRTGRAG  G A T V     KH  ++E
Sbjct: 298 TDVAARGIDVDGITHIYNYDMVLDTDTYIHRIGRTGRAGEKGTAVTFVTP---KHNASLE 354

Query: 362 KL 363
           KL
Sbjct: 355 KL 356


>gi|50419477|ref|XP_458265.1| DEHA2C13486p [Debaryomyces hansenii CBS767]
 gi|74659403|sp|Q6BU54|DED1_DEBHA RecName: Full=ATP-dependent RNA helicase DED1
 gi|49653931|emb|CAG86342.1| DEHA2C13486p [Debaryomyces hansenii]
          Length = 630

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 143/356 (40%), Positives = 206/356 (57%), Gaps = 23/356 (6%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKG 66
           L P +V  V  + + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+     G
Sbjct: 163 LDPLLVENVKLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMNG 222

Query: 67  RARVR-----------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            A V             P  L++ PTREL +Q+ D  +K+     +  +++ GG     Q
Sbjct: 223 PAEVPETAGAFSSHKVYPTALVMAPTRELVSQIFDEAKKFAYRSWVRPSVVYGGADIGGQ 282

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + LERG D+L+ TPGR+ D   RG++ + +I+ LV+DEADRMLDMGF P I++I     
Sbjct: 283 IRNLERGCDLLVATPGRLKDLLERGRVSLASIKYLVLDEADRMLDMGFEPQIRHIVQECD 342

Query: 176 FT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTL+FSAT   E+Q ++ +FL+    + V    ST+E I    +  Y +  +K
Sbjct: 343 MPGVEDRQTLMFSATFPKEIQFLARDFLKEYIFLSVGRVGSTSENITQKIL--YVEDEEK 400

Query: 232 CALLQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            ++L  LL + D   NG  IIF   K+   NL   L  QGF   AIHG+  Q  R K L+
Sbjct: 401 KSVLLDLLSAND---NGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALA 457

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
            FK GT  ++VA+ +AARGLDIP+V H+ N+D+P+  ++Y+HRIGRTGRAG  G A
Sbjct: 458 AFKTGTAPILVATAVAARGLDIPNVSHIVNYDLPSDIDDYVHRIGRTGRAGNIGIA 513


>gi|332088088|gb|EGI93213.1| ATP-dependent RNA helicase srmB [Shigella boydii 5216-82]
          Length = 442

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 138/356 (38%), Positives = 206/356 (57%), Gaps = 4/356 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73
           A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  +L+  R +   P
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +      D+++ T GR+
Sbjct: 78  RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQ 192
           L +          +E L++DEADRMLDMGF   I++I     + +QTLLFSAT+  D +Q
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
             +E  L++P  +  N PS+      H +         K ALL  LL+  +  ++ I+F 
Sbjct: 198 DFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEAPRS-IVFV 255

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
            +++ V  L + L + G + C + G + Q  R + +    EG + ++VA+D+AARG+DIP
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           DV HVFNFD+P   + Y+HRIGRT RAGR G A +LV   D   +  + + IE+ +
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371


>gi|29427914|sp|Q921N6|DDX27_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
           Full=DEAD box protein 27
          Length = 760

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 140/364 (38%), Positives = 214/364 (58%), Gaps = 3/364 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 184 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 243

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++  +  ++T  L +GG+  ++Q   L 
Sbjct: 244 ERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALR 303

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEAD+MLD  F   ++ I  +    RQ
Sbjct: 304 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADKMLDEYFEEQMKEIIRMCSHHRQ 363

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQL 238
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+     +   + A++  L
Sbjct: 364 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 423

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L    T  + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I +
Sbjct: 424 LMRTFT-DHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDI 482

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K + 
Sbjct: 483 LVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLK 542

Query: 359 AIEK 362
            I K
Sbjct: 543 EIVK 546


>gi|194880138|ref|XP_001974373.1| GG21122 [Drosophila erecta]
 gi|190657560|gb|EDV54773.1| GG21122 [Drosophila erecta]
          Length = 816

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 133/376 (35%), Positives = 208/376 (55%), Gaps = 35/376 (9%)

Query: 10  PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
           PK +  ++D  GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L+ ++    
Sbjct: 396 PKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPK 455

Query: 69  RVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             R+      P  +I+ PTRELA Q+ +   K+G+   +   +++GG+  E Q  +L  G
Sbjct: 456 IERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLG 515

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177
            +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P T     
Sbjct: 516 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 575

Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
                               RQT++F+ATM   +++++  +L+ P  + + +     E  
Sbjct: 576 TEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERT 635

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
           E   V    +  K+  L++ L +  D     IIF NQKK    L   LEK G++ C +HG
Sbjct: 636 EQ-IVYMMGENDKRKKLMEILSRKIDP--PVIIFVNQKKGADVLAKGLEKLGYNSCTLHG 692

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
              Q  R   L+  K G   ++VA+D+A RG+DI DV  V N+D+    E+Y HRIGRTG
Sbjct: 693 GKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTG 752

Query: 338 RAGRHGKAFTLVAKED 353
           RAG+ G A + V K+D
Sbjct: 753 RAGKTGCAISFVTKDD 768


>gi|171685610|ref|XP_001907746.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942766|emb|CAP68419.1| unnamed protein product [Podospora anserina S mat+]
          Length = 798

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 140/359 (38%), Positives = 203/359 (56%), Gaps = 3/359 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ LS  ++  +   G+ KPTPIQ KTIP+ L   DV G A TG+GKT +F++P+L  
Sbjct: 275 FLEMSLSRPILKGLNSVGFTKPTPIQSKTIPIALMGKDVVGGAVTGSGKTGAFLVPILER 334

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R +IL PTRELA Q      K   + ++   L +GG+  + Q ++L   
Sbjct: 335 LLYRSKKVATTRVVILAPTRELAIQCHAVGVKLASHTDIKFCLAVGGLSLKVQEQELRLR 394

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     +  +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 395 PDVVIATPGRFIDHMRNSASFAVETVEILVLDEADRMLEDGFADELNEILTTLPKSRQTM 454

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMT  + ++    L  P RI+V++   TA  +   FV     +  K+   L  + +
Sbjct: 455 LFSATMTSSVDRLIRAGLNKPVRIQVDSQKKTASNLRQEFVRLRPGREKKRMGYLVHICK 514

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  T +  IIF  QKK            G S   +HG+++Q  R+  +  F++G +  ++
Sbjct: 515 TLYTERV-IIFFRQKKIAHETRIIFGLLGMSCAELHGSMNQAQRIASVEAFRDGKVNFLL 573

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           A+DLA+RGLDI  V  V N++ P   E YIHRIGRT RAGR G A TL A+ D K + A
Sbjct: 574 ATDLASRGLDIKGVDTVINYEAPQNLEIYIHRIGRTARAGRSGVALTLAAEPDRKVVKA 632


>gi|260581720|ref|ZP_05849517.1| superfamily II DNA and RNA helicase [Haemophilus influenzae NT127]
 gi|260095313|gb|EEW79204.1| superfamily II DNA and RNA helicase [Haemophilus influenzae NT127]
          Length = 415

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 140/368 (38%), Positives = 214/368 (58%), Gaps = 10/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDLSLHPIVRDALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   +        PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 71  LLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P    
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIALDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           R T+LFSAT++ ++++++   + +P+ IE+     T   I E  F   Y     K ALL 
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELF---YPSNQDKMALLL 247

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ +   +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G +
Sbjct: 248 TLMEDE-WPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGNL 306

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   +
Sbjct: 307 DILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMN 366

Query: 357 IDAIEKLI 364
           + AIE+ I
Sbjct: 367 LPAIEEYI 374


>gi|225555683|gb|EEH03974.1| ATP-dependent RNA helicase DBP2 [Ajellomyces capsulatus G186AR]
          Length = 544

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 211/374 (56%), Gaps = 13/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ +PT IQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 128 FDEAGFPQYVMSEVKAQGFARPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 187

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 188 INAQPLLAPGDG----PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQI 243

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 244 RDLTRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 303

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT ++SAT   ++++++++FL +  ++ + +   +A       V   +++ K+  + +
Sbjct: 304 DRQTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAK 363

Query: 237 QLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            L +  +  K+   +IF   K+   ++   L + G+   +IHG+  Q  R  +L+ FK G
Sbjct: 364 HLDRIMEDNKHSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTG 423

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A TL   ++ 
Sbjct: 424 KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNA 483

Query: 355 KHI-DAIEKLIEKK 367
           K   D +  L E K
Sbjct: 484 KQARDLVAILSESK 497


>gi|320536466|ref|ZP_08036500.1| DEAD/DEAH box helicase [Treponema phagedenis F0421]
 gi|320146675|gb|EFW38257.1| DEAD/DEAH box helicase [Treponema phagedenis F0421]
          Length = 618

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 136/363 (37%), Positives = 208/363 (57%), Gaps = 7/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59
           + F D+GL   V+ A+   G+  PTPIQI  IP +L    ++   A+TGTGKT +F LP+
Sbjct: 3   LSFKDIGLEDIVLQAIEAKGFETPTPIQILAIPRLLSGETNIIAKARTGTGKTGAFGLPL 62

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  L   RA +  PR L+L PTRELA QVA   E +       +A++ GG     Q + L
Sbjct: 63  IQEL---RADLGHPRALVLVPTRELAMQVAAEIESFRIETYPRIAVVYGGSSMSEQLRAL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA++++ TPGRI+DH  RG L +  IE  ++DEAD ML+MGFI  I+ I S      +
Sbjct: 120 KKGAEIIVGTPGRIIDHIERGSLDLTQIEYFILDEADEMLNMGFISDIETIFSKANSNAR 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM   +  ++ +F+ + + I     S    ++   F     +  K  AL++ + 
Sbjct: 180 ILMFSATMPKPILSIASDFMGDYE-IVAEELSEEPVSLTEQFYWFVREEDKIEALIRLID 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + D    G++FC  K +  ++   LE++G+   A+HG+I Q  R KILS F+   I+ +
Sbjct: 239 ITPDFY--GLVFCQTKLDADSVAKELEERGYEAAALHGDIPQNQREKILSRFRSKKIRTL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV N+ +P     Y HRIGRTGRAG  G A + +   + + ID 
Sbjct: 297 VATDVAARGIDIEGITHVVNYAIPYDGPTYTHRIGRTGRAGSTGTAVSFIRPNESRKIDY 356

Query: 360 IEK 362
           + +
Sbjct: 357 LAR 359


>gi|298704856|emb|CBJ28373.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 519

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 134/359 (37%), Positives = 201/359 (55%), Gaps = 11/359 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  +   V+  V+  G+  PTPIQ +  P+ L   D+ GI+ TG+GKT +F+LP +
Sbjct: 126 MTFEEASMPEYVLREVMKQGFSAPTPIQSQGWPMALLGRDMVGISATGSGKTLAFLLPAM 185

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L++ PTRELA Q+ +  +K+G++  +    + GG+P   
Sbjct: 186 IHINAQPYLEQGDG----PIVLVVAPTRELAVQIKEECDKFGRSSEIKNTCVYGGVPKRI 241

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L RG +++I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +
Sbjct: 242 QVNDLNRGVEIVIATPGRLIDLLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQI 301

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTL++SAT   E+Q ++ +FL +  ++ V +    A       +     ++K  +L
Sbjct: 302 RPDRQTLMWSATWPKEVQALARDFLHHYYQVTVGSLELAANKDIKQIIECTEDFNKYRSL 361

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            + L Q     K  ++F   KK    L  SL + G+    IHG+  Q  R  +L +FK G
Sbjct: 362 SKHLQQHGHNGKV-LVFVETKKGCDALTRSLRQDGYQARCIHGDKTQEERDYVLKDFKGG 420

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             Q++VA+D+AARGLD+ D+  V NFD PN  E+YIHRIGR GRAG  G A +    ++
Sbjct: 421 NFQVLVATDVAARGLDVKDIQMVINFDFPNNMEDYIHRIGRCGRAGAKGVAVSFFGSKN 479


>gi|239930343|ref|ZP_04687296.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 612

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 133/349 (38%), Positives = 190/349 (54%), Gaps = 5/349 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L
Sbjct: 28  LTFADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTL 87

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  GR     PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LE
Sbjct: 88  ATLAGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALE 147

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+ D  NRG   + N++I V+DEAD+M D+GF+P +  +   VP   Q 
Sbjct: 148 RGVDILVATPGRLRDIINRGACSLENVQIAVLDEADQMSDLGFLPEVTELLDQVPAGGQR 207

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM +E++ + + +L +P   EV+       T+ H  +       K  A +   + 
Sbjct: 208 MLFSATMENEIKTLVDRYLNDPVSHEVDAAQGAVTTMSHHILVV---KPKDKAPVTAAIA 264

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+      IIF   +     +   L   G    A+HG + Q +R + L++FK+G + ++V
Sbjct: 265 SRKGRT--IIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLV 322

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           A+D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L 
Sbjct: 323 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLA 371


>gi|241958200|ref|XP_002421819.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223645164|emb|CAX39763.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 557

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 131/353 (37%), Positives = 198/353 (56%), Gaps = 11/353 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V D G+ KPT IQ +  P+ L   D+ GIA TG+GKT S+ LP +  
Sbjct: 119 FDEAGFPDYVLQEVKDQGFPKPTAIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVH 178

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L+ G      P  L+L PTRELA Q+     K+GK+  +    + GG P   Q 
Sbjct: 179 INAQPQLQYGDG----PIVLVLAPTRELAVQIQTECAKFGKSSRIRNTCVYGGAPKGPQI 234

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG ++ I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 235 RDLARGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 294

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E+Q+++ ++L +P ++ + +    A       V    ++SK+  L++
Sbjct: 295 DRQTLMWSATWPKEVQQLARDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVK 354

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L  + +  +N I +F + K+    +   L   G+   AIHG+ DQ  R  +L  F++G 
Sbjct: 355 HLESALNERENKILVFASTKRTCDEITTYLRSDGWPALAIHGDKDQSERDWVLDEFRKGK 414

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             +MVA+D+AARG+D+  + HV N+D+P   E+Y+HRIGRTGR G  G A + 
Sbjct: 415 TSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISF 467


>gi|290989782|ref|XP_002677516.1| DEAD/DEAH box helicase [Naegleria gruberi]
 gi|284091124|gb|EFC44772.1| DEAD/DEAH box helicase [Naegleria gruberi]
          Length = 535

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 143/357 (40%), Positives = 206/357 (57%), Gaps = 15/357 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIP-LVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F +  L   ++  V  +GY KPTPIQ  ++P +V  + D+   AQTG+GKTA+F+LP++ 
Sbjct: 107 FEEADLHELLMTNVKKSGYTKPTPIQKHSMPAIVTSKRDMMACAQTGSGKTAAFLLPIIN 166

Query: 62  ILEKG---RARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            L K    + + R       P+ +IL PTREL  Q+ D   K+     L   ++ GG   
Sbjct: 167 ALLKSGIHKDKRRFAPNKGNPKAVILAPTRELCQQIYDECRKFIFQTYLKTVVVYGGASS 226

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT- 171
             Q K+LERG D+L+ TPGR+ D   R KL M+ ++ LV+DEADRMLDMGF P I++I  
Sbjct: 227 GYQMKQLERGVDILVGTPGRMNDFIQREKLDMSGVQYLVLDEADRMLDMGFEPQIRSIVE 286

Query: 172 -SLVP--FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
            S +P    R TLL+SAT   E QK++ +FL +   ++V     T + I   F     + 
Sbjct: 287 GSGMPPKGDRLTLLYSATFPKETQKLALDFLHDELFVQVGIIGGTTDNITQSFYQV-DRR 345

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            K+  L++ L + ++  +  ++F  QK     +   L   GF    IHG+ DQRSR + L
Sbjct: 346 GKQDKLVEVLTEKKEEREKTLVFVQQKSTCDRIYELLTPLGFKCSVIHGDKDQRSRERSL 405

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             FK+G   ++VA+D+AARGLDI  V HV N+D+P   ++YIHRIGRTGR G  G A
Sbjct: 406 RQFKDGYTNILVATDVAARGLDIEKVAHVINYDLPKEIDSYIHRIGRTGRVGNLGIA 462


>gi|70663482|emb|CAJ15140.1| PL10a protein [Platynereis dumerilii]
          Length = 771

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 148/384 (38%), Positives = 223/384 (58%), Gaps = 22/384 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA+L L   V   ++ + Y KPTP+Q   +P++ ++ D+   AQTG+GKTASF++P+L+ 
Sbjct: 291 FAELELGEIVDSNIVLSKYTKPTPVQKHAMPIIKKKRDLMACAQTGSGKTASFLVPVLSQ 350

Query: 62  ---------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                    I E+     R + P  L+L PTRELA+Q+ +   K+    ++   ++ GG 
Sbjct: 351 MFLDGQPEFIREQNNRNNRKQYPIALVLAPTRELASQIYEEARKFAYRSHVRPCVVYGGA 410

Query: 111 PFEAQNKKL-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
              AQ + L ERG  +L+ TPGR++D   RGK+ +++I  +V+DEADRMLDMGF P I+ 
Sbjct: 411 DIGAQMRDLPERGCHLLVATPGRLVDMLERGKIGLDHIRFVVLDEADRMLDMGFEPQIRR 470

Query: 170 ITS--LVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I     +P T  R+TL+FSAT   E+Q ++ +FL N   + V    ST+E I    V  +
Sbjct: 471 IVEKDTMPPTGDRRTLMFSATFPKEIQILARDFLHNYIFLAVGRVGSTSENITQKVV--W 528

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            +   K + L  LL +       ++F   KK    L + L  +G+    IHG+  Q+ R 
Sbjct: 529 VEEPDKRSFLLDLLNASGPDSLTLVFVETKKGADALDNFLYNEGYPSACIHGDRSQKERE 588

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L NF+ G   ++VA+ +AARGLDIP+V HV NFD+P+  E Y+HRIGRTGR G  G A
Sbjct: 589 EALRNFRSGKTPVLVATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 648

Query: 346 FTLVAKEDIKHI--DAIEKLIEKK 367
            +    ++ K+I  D ++ LIE K
Sbjct: 649 TSFFNDKN-KNIVRDMVDLLIEAK 671


>gi|301762406|ref|XP_002916625.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
           [Ailuropoda melanoleuca]
          Length = 706

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 138/373 (36%), Positives = 219/373 (58%), Gaps = 7/373 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG--- 66
           P+V+  +  AG+ KPTPIQ ++ P+VLQ  D+ G+AQTGTGKT S+++P    L+     
Sbjct: 251 PEVMENIKKAGFQKPTPIQSQSWPIVLQGIDLIGVAQTGTGKTLSYLMPGFIHLDSQPVI 310

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTRELA QV     KY     L    + GG     Q + L++G D++
Sbjct: 311 RGQRNGPGMLVLTPTRELALQVEAECSKYSYK-GLKSVCIYGGGDRNGQIQDLKKGVDII 369

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + ++  LV+DEAD+MLDMGF P I  I   V   RQT++ SAT
Sbjct: 370 IATPGRLNDLQMNNFVNLRSVTYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTIMTSAT 429

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
               ++++++++L+ P  + V T    A  T++   + T  +  +KC+ +Q  L+S    
Sbjct: 430 WPYAVRRLAQSYLKEPMIVYVGTLDLMAVSTVKQNIIVTTEE--EKCSHIQTFLESMSPK 487

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F ++K    +L   L  +  SV ++HGN +Q  R + L NFK G +++++A+DLA
Sbjct: 488 DKVIVFVSRKATADHLSSDLILRHVSVESLHGNREQSDRERALENFKTGKVRILIATDLA 547

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLD+ D+ HV+N+D P   E Y+HR+GRTGRAGR G + TL+ + D +    +  ++E
Sbjct: 548 SRGLDVLDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGISITLLTRNDWRVAGELINILE 607

Query: 366 KKVDWLNGDLSSL 378
           +    +  DL ++
Sbjct: 608 RAQQSIPEDLVAM 620


>gi|219119587|ref|XP_002180550.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408023|gb|EEC47958.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 552

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 218/369 (59%), Gaps = 19/369 (5%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-LTILEKG------RARVRM 72
           GY +PTP+Q  ++P+  Q  D+   AQTG+GKTA F+ P+ ++++++G       AR R+
Sbjct: 141 GYSRPTPVQKYSVPICTQGRDLMACAQTGSGKTAGFLFPIIMSMIKRGGSDPPENARRRI 200

Query: 73  -PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
            P  L+L PTRELA Q+ +  +++     +   ++ GG     Q +++ERG D+L+ TPG
Sbjct: 201 YPEALVLAPTRELAQQIHEEAKRFTYATGIASVVIYGGANVGDQLREMERGCDLLVATPG 260

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT--SLVP--FTRQTLLFSATM 187
           R++D   RG+L M ++  LV+DEADRMLDMGF P I+ I   S +P    RQT++FSAT 
Sbjct: 261 RLVDLIERGRLGMESVSFLVLDEADRMLDMGFEPQIRRIVEESGMPGGIDRQTMMFSATF 320

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
              +Q+++ +F+++   + V    S ++ +    V    +  K  AL++ LL  QD +  
Sbjct: 321 PANIQRLASDFMRDYVFLTVGRVGSASKDVTQT-VEFVEERDKVDALMKFLLTIQDGLI- 378

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            +IF   K++   +   L  QGF  C+IHG+  QR R   L  FK G   ++ A+ +AAR
Sbjct: 379 -LIFVETKRSCDYVEDVLCGQGFPACSIHGDKSQREREDALRYFKNGNTPILCATSVAAR 437

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           GLDIP+V  V N+D+P+  ++Y+HRIGRTGRAG  G A + + + +   +  +  L+++ 
Sbjct: 438 GLDIPNVTQVVNYDLPSNIDDYVHRIGRTGRAGNTGAALSFINESNSGVVRELRDLLDEN 497

Query: 368 VD----WLN 372
                 WLN
Sbjct: 498 EQDVPPWLN 506


>gi|209694151|ref|YP_002262079.1| ATP-dependent RNA helicase SrmB [Aliivibrio salmonicida LFI1238]
 gi|208008102|emb|CAQ78243.1| ATP-dependent RNA helicase SrmB [Aliivibrio salmonicida LFI1238]
          Length = 416

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 135/367 (36%), Positives = 208/367 (56%), Gaps = 5/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL LSP ++ A+ + GY +PT +Q   IP  L+  D+   A TGTGK+A+F+LP L  
Sbjct: 5   FADLDLSPNLLRALEEIGYQRPTQVQAMAIPEALEGKDILASAPTGTGKSAAFLLPALQH 64

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+    R   P R LIL PTRELA QVAD   +  K  +  V  + GGI ++     L R
Sbjct: 65  LDDFPRRDPGPARVLILTPTRELAIQVADEARELAKYTHHKVFTITGGISYQEHADILAR 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR++++    +     IE L++DEADRMLDMGF P +  ++    + +QT 
Sbjct: 125 TQDIVVATPGRLMEYIEAERFDCRAIETLILDEADRMLDMGFGPVVDRLSKECRWRKQTF 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+    +   + + L  P +I V  PS         +         K  LL+ +L 
Sbjct: 185 LFSATLEGRGVDGFTADLLNEPAKI-VAEPSRRERKKITQWYHRADSLPHKIELLKSILT 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +Q   +  I+F   ++ +  L   LE    S   + G + Q SR   +S F++G + +++
Sbjct: 244 NQ--TERAIVFVKTRERLAELRGHLETAKISCAWLQGEMPQESRNNAISRFRDGKVNVLI 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+PDV HV NFD+P  A+ Y+HRIGRT RAG+ G A +L+   D K ++ +
Sbjct: 302 ATDVAARGIDLPDVSHVINFDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQKMMERV 361

Query: 361 EKLIEKK 367
            + ++++
Sbjct: 362 GRYVKEE 368


>gi|167855638|ref|ZP_02478397.1| ornithine carbamoyltransferase [Haemophilus parasuis 29755]
 gi|167853265|gb|EDS24520.1| ornithine carbamoyltransferase [Haemophilus parasuis 29755]
          Length = 406

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 139/367 (37%), Positives = 214/367 (58%), Gaps = 9/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   V+ A+   G+   TPIQ KT+P  L R D+ G AQTGTGKT +F++     
Sbjct: 10  FIDFPIHDSVLAALDSKGFEFCTPIQAKTLPYTLIRQDIAGQAQTGTGKTLAFLVATFHH 69

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L       +   PR LIL PTRELA Q+A +     +  +L +AL  GG  ++ Q K++E
Sbjct: 70  LLNHDIPTKHNQPRALILAPTRELAVQIASDASILTQYADLRLALAYGGDGYDKQLKEIE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTR 178
           RG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P    R
Sbjct: 130 RGVDILIGTTGRVIDYVKQGIIDLDKIQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEER 189

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237
            T+LFSAT++  +++++   + N + +E+     T   I E  F   Y     K ALL  
Sbjct: 190 FTMLFSATLSHRVRELAFEDMHNAEYVEIEPLQRTGHRIKEELF---YPSNEDKMALLLT 246

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++ ++     I+F N K     +   L   G  V  + G+I Q+ R+ +L +F +G + 
Sbjct: 247 LME-EEWPDRCIVFANTKHKCEEIWSYLSADGHRVGLLTGDIPQKKRLALLDSFTQGELD 305

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IPDV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +    ++
Sbjct: 306 ILVATDVAARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACERYAVNL 365

Query: 358 DAIEKLI 364
            AIE+ I
Sbjct: 366 PAIEEYI 372


>gi|289665687|ref|ZP_06487268.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 458

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 145/381 (38%), Positives = 215/381 (56%), Gaps = 9/381 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ L LSP +   +   GY   TPIQ +++P +LQ  DV   A TG+GKTA+F L +L 
Sbjct: 3   EFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+    R +    L+L PTRELA QV     K      N+ + +L GG+P   Q   LE
Sbjct: 63  QLDPALTRAQ---ALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 119

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I S     RQ
Sbjct: 120 AHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT  D ++ ++   L++P  I V    +  E I+  F      Y +K A+   LL
Sbjct: 180 SLLFSATFPDIIRTLAREILKDPVEITVEGADNAPE-IDQQFFEVDPTYRQK-AVAGLLL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +     ++ ++FCN +K V  +  SL++ GFS  A+HG+++QR R ++L  F   +  ++
Sbjct: 238 RFNP--ESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+HG A +LVA  +   + A
Sbjct: 296 VASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARVQA 355

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           +E    + + W    L++  P
Sbjct: 356 LEAAQGQPLKWSRAPLATARP 376


>gi|67598709|ref|XP_666233.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54657185|gb|EAL36001.1| hypothetical protein Chro.30274 [Cryptosporidium hominis]
          Length = 868

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 132/355 (37%), Positives = 203/355 (57%), Gaps = 3/355 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G SPK++ ++   GY  PTPIQ K  P +L   DV  +A+TG+GKTA FVLPM+  
Sbjct: 6   FQSFGFSPKLLESIKIIGYSLPTPIQRKCFPSILAGRDVVAMARTGSGKTAGFVLPMIER 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L    +++   R ++L PTRELA Q      K     NL V  L GG   + Q + L   
Sbjct: 66  LGCSHSQIVGIRGVVLSPTRELALQTYRVVRKLACKTNLVVCALTGGSSLDRQFESLSGN 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+  H     L +  ++I+++DEADR+ +MG    I+ I   +P  RQ +L
Sbjct: 126 PDIVVATPGRLFHHIIEAGLSLIAVKIIILDEADRLFEMGLASQIEKILESIPKNRQCVL 185

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM   L   S+  L  P+ I++++    +ET++  F+  + +  +K A L  LL++ 
Sbjct: 186 VSATMPTALASFSKVMLNEPEVIQIDSDYILSETLKLTFL--FVREDEKLASLLYLLRNT 243

Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  IIFC  K +V  +   LE     V  I+GN+DQ +R   LS F++   + +V 
Sbjct: 244 IPSHERAIIFCATKHHVDYIVKILESNNIIVSYIYGNMDQEARTMHLSTFRKNKSRALVV 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +D+AARG+DIP + +V NFD P   + ++HR GRT RAG+HG+AF+L+   D+ +
Sbjct: 304 TDIAARGVDIPMIKYVINFDFPLSPKLFVHRTGRTARAGQHGRAFSLITSRDLPY 358


>gi|195579916|ref|XP_002079802.1| GD24145 [Drosophila simulans]
 gi|194191811|gb|EDX05387.1| GD24145 [Drosophila simulans]
          Length = 641

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 133/376 (35%), Positives = 208/376 (55%), Gaps = 35/376 (9%)

Query: 10  PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
           PK +  ++D  GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L+ ++    
Sbjct: 221 PKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPK 280

Query: 69  RVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             R+      P  +I+ PTRELA Q+ +   K+G+   +   +++GG+  E Q  +L  G
Sbjct: 281 IERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLG 340

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177
            +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P T     
Sbjct: 341 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 400

Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
                               RQT++F+ATM   +++++  +L+ P  + + +     E  
Sbjct: 401 TEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERT 460

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
           E   V    +  K+  L++ L +  D     IIF NQKK    L   LEK G++ C +HG
Sbjct: 461 EQ-IVYMMGENDKRKKLMEILSRKIDP--PVIIFVNQKKGADVLAKGLEKLGYNSCTLHG 517

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
              Q  R   L+  K G   ++VA+D+A RG+DI DV  V N+D+    E+Y HRIGRTG
Sbjct: 518 GKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTG 577

Query: 338 RAGRHGKAFTLVAKED 353
           RAG+ G A + V K+D
Sbjct: 578 RAGKTGCAISFVTKDD 593


>gi|16768302|gb|AAL28370.1| GM01081p [Drosophila melanogaster]
          Length = 641

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 133/376 (35%), Positives = 208/376 (55%), Gaps = 35/376 (9%)

Query: 10  PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
           PK +  ++D  GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L+ ++    
Sbjct: 221 PKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPK 280

Query: 69  RVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             R+      P  +I+ PTRELA Q+ +   K+G+   +   +++GG+  E Q  +L  G
Sbjct: 281 IERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLG 340

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177
            +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P T     
Sbjct: 341 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 400

Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
                               RQT++F+ATM   +++++  +L+ P  + + +     E  
Sbjct: 401 TEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERT 460

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
           E   V    +  K+  L++ L +  D     IIF NQKK    L   LEK G++ C +HG
Sbjct: 461 EQ-IVYMMGENDKRKKLMEILSRKIDP--PVIIFVNQKKGADVLAKGLEKLGYNSCTLHG 517

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
              Q  R   L+  K G   ++VA+D+A RG+DI DV  V N+D+    E+Y HRIGRTG
Sbjct: 518 GKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTG 577

Query: 338 RAGRHGKAFTLVAKED 353
           RAG+ G A + V K+D
Sbjct: 578 RAGKTGCAISFVTKDD 593


>gi|194434617|ref|ZP_03066873.1| ATP-dependent RNA helicase RhlB [Shigella dysenteriae 1012]
 gi|194417136|gb|EDX33249.1| ATP-dependent RNA helicase RhlB [Shigella dysenteriae 1012]
 gi|332084943|gb|EGI90125.1| ATP-dependent RNA helicase rhlB [Shigella dysenteriae 155-74]
          Length = 421

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 144/373 (38%), Positives = 210/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PT ELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRKVNQPRALIMAPTHELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + IEV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|319792321|ref|YP_004153961.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS]
 gi|315594784|gb|ADU35850.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
          Length = 667

 Score =  246 bits (627), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 149/448 (33%), Positives = 241/448 (53%), Gaps = 57/448 (12%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH----------DVCGIAQTGTGKT 52
           F  LGL+P+++ AV D G+ +PT +Q K IPL +             D+   +QTG+GKT
Sbjct: 79  FIRLGLAPELIAAVADLGFTQPTTVQDKVIPLAMGGEAGQDGKARFVDLMVSSQTGSGKT 138

Query: 53  ASFVLPMLTILEKGRA---------------------------------------RVRMP 73
           A+F+LP+L  L K +A                                       +   P
Sbjct: 139 AAFLLPVLHTLLKRQAEAEAEAKAEFQRLAAEAAARGEAAPKKPKRKDPTNTRHFKAATP 198

Query: 74  RTLILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
             LIL PTRELA QVA D  E       L +A ++GG+P++ Q  KL+  AD+++ TPGR
Sbjct: 199 GALILCPTRELAQQVAHDAIELVRHCRGLRIANVVGGMPYQLQIAKLQ-NADLVVATPGR 257

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           +LD     +L ++ ++ LV+DEADRMLD+GF   +  +  L    +QT++FSAT    +Q
Sbjct: 258 LLDLQRSQQLKLDQVKFLVVDEADRMLDLGFSDDLAEVNQLTIERQQTMMFSATFAPRIQ 317

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
           ++++  ++ P+R+ +++P      I+   + A  +Q+ +K  LL   L+   ++   I+F
Sbjct: 318 QLAQRVMREPQRVTIDSPQEKHANIKQSLYWADNSQHKRK--LLDHWLRD-TSINQAIVF 374

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
            + +     L + L+++GFS  A+HG + Q  R + L   ++G +Q++VA+D+AARG+D+
Sbjct: 375 ASTQVECDGLANDLQQEGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVAARGIDV 434

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVD 369
           P + HVFNF +P +AE+Y HRIGRTGRAGR G A T     D + I  IE+   +  K +
Sbjct: 435 PTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAITFAEFRDRRKIMDIEQYSRQQFKAE 494

Query: 370 WLNGDLSSLNPPLEKIDIAQHNHARKNN 397
            + G       P  +  + ++   R +N
Sbjct: 495 VVAGLEPQQRMPQSRPPMGEYRGGRGDN 522


>gi|259488879|tpe|CBF88686.1| TPA: ATP-dependent RNA helicase (Drs1), putative (AFU_orthologue;
           AFUA_1G14990) [Aspergillus nidulans FGSC A4]
          Length = 814

 Score =  246 bits (627), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 140/359 (38%), Positives = 203/359 (56%), Gaps = 3/359 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS  ++  +    +  PTPIQ KTIP+ L   D+ G A TG+GKTA+FV+P+L  
Sbjct: 300 FQEFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILER 359

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++ 
Sbjct: 360 LLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKKR 419

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 420 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTM 479

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMTD + K+    L  P R+ V+T  +TA T+   FV     +  K+   L  L +
Sbjct: 480 LFSATMTDSVDKLIRVGLNRPVRLMVDTKKNTAVTLVQEFVRLRPGREDKRLGYLLHLCK 539

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  I+F  QKK    +       G     +HG++ Q  R+K + +F++G +  ++
Sbjct: 540 EVYTGRV-IVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFRDGNVNFLL 598

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + A
Sbjct: 599 ATDLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDRKVVKA 657


>gi|239980958|ref|ZP_04703482.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291452821|ref|ZP_06592211.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291355770|gb|EFE82672.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
          Length = 789

 Score =  246 bits (627), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 132/346 (38%), Positives = 190/346 (54%), Gaps = 5/346 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   VV  +   G  KP PIQ  TIP  L   D+ G  +TG+GKT SF LP+L  
Sbjct: 74  FASLGLPEGVVRKLAQNGVTKPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLAS 133

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G    + PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LERG
Sbjct: 134 LAGGHTEKKKPRGVILTPTRELAMQVADALQPYGDVLGLRMKVVCGGTSMGNQIYALERG 193

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+ D  NRG   + NIEI ++DEAD+M D+GF+P +  +   VP   Q +L
Sbjct: 194 VDILVATPGRLRDIINRGACSLENIEIAILDEADQMSDLGFMPEVTELLDQVPEGGQRML 253

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E+  + + +L+NP   EV+       T+ H  +    +   K  +   +   +
Sbjct: 254 FSATMENEISSLVKRYLKNPVSHEVDAAQGAVTTMSHHIL--IVKPRDKAPVTGAIAARK 311

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L + G    A+HG + Q +R + L++FK+G + ++VA+
Sbjct: 312 GRT---IIFVRTQLGADRVAEQLRESGVKADALHGGMTQGARTRTLADFKDGHVNVLVAT 368

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L
Sbjct: 369 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSL 414


>gi|224048550|ref|XP_002190979.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 53
           [Taeniopygia guttata]
          Length = 729

 Score =  246 bits (627), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 138/361 (38%), Positives = 209/361 (57%), Gaps = 7/361 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---MLTILEKG 66
           P ++ ++   G+ KPTPIQ +  P++LQ  D+ GIAQTGTGKT ++++P    LT     
Sbjct: 334 PDIMASIRKVGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLTSQPIS 393

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           + +   P  L+L PTRELA QV     KY     +    + GG   + Q   + +G D++
Sbjct: 394 KDQRGGPGMLVLAPTRELALQVEAECSKYAYK-GIKSICVYGGGDRKGQIDMVTKGVDIV 452

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + +I  LV+DEADRMLDMGF P I  I   V   RQT++ SAT
Sbjct: 453 IATPGRLNDLQMNNFINLKSITYLVLDEADRMLDMGFEPQIMKILIDVRPDRQTVMTSAT 512

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
             D ++++++++L+NP  + V T    A  T++   +    +  KK A +   ++S    
Sbjct: 513 WPDGVRRLAKSYLKNPMIVYVGTLDLAAVSTVQQKVIVIPEE--KKRAFMHSFIKSMKPK 570

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              IIF  +K    +L      QG  V ++HGN +Q  R + L +FK+G ++++VA+DLA
Sbjct: 571 DKVIIFVGKKLTADDLASDFGIQGIPVQSLHGNREQCDREQALDDFKKGKVRILVATDLA 630

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLD+ D+ HVFNFD P   E Y+HR+GRTGRAGR G+A TLV   D +    +  ++E
Sbjct: 631 SRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRSGEAVTLVTSNDWRFASELIDILE 690

Query: 366 K 366
           +
Sbjct: 691 R 691


>gi|332084705|gb|EGI89893.1| ATP-dependent RNA helicase rhlB [Shigella boydii 5216-82]
          Length = 421

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 144/373 (38%), Positives = 210/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PT ELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRKVNQPRALIMAPTHELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYTKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + IEV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|303271399|ref|XP_003055061.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463035|gb|EEH60313.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 733

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 138/387 (35%), Positives = 213/387 (55%), Gaps = 33/387 (8%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILE-- 64
           L  K++ A+   GY KP+PIQ+ +IP+ L + DV GIA+TG+GKT +FV+PML  I+E  
Sbjct: 304 LPEKILRAIQKVGYAKPSPIQMASIPIGLLKRDVIGIAETGSGKTCAFVVPMLAYIMELP 363

Query: 65  --KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                     P  L++ PTRELA Q+ +   K+    N  V  ++GG   E Q  KL RG
Sbjct: 364 VMTDEVAAHGPYALVMAPTRELAQQIEEETTKFAHFLNYRVTSVVGGQSIEDQGFKLRRG 423

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT------SLVPF 176
            +++I TPGR++D   R   ++     +V+DEADRM+DMGF P + ++       +L P 
Sbjct: 424 CEIVIGTPGRVIDVLERRYTVLQQCNYIVLDEADRMIDMGFEPQVMSVMDSMSADNLKPI 483

Query: 177 T-------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
                               R T +FSATM   +++++  +L+NP  + + +   T++ I
Sbjct: 484 DEAETIDAGGLEAGAAGTRYRMTYMFSATMPPSVERLARKYLRNPAVVNIGSAGKTSDLI 543

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
           +   V    + +K+  L   L +  DT    I+F N K+ V ++     KQG+SV +IHG
Sbjct: 544 KQV-VMWMTRGAKETQLELVLSRYPDT--QAIVFVNTKRAVDHVQSLCVKQGYSVASIHG 600

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
              Q  R   L  FK G   ++VA+D+A RG+D+ D+  V N+++P   ENY HRIGRTG
Sbjct: 601 GKSQDQREDSLKGFKAGEYDILVATDVAGRGIDVKDIDLVVNYEMPLVIENYTHRIGRTG 660

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RAGR G A + +  ED   +  +++L+
Sbjct: 661 RAGRQGTAVSFITSEDTDVMYDLKELL 687


>gi|313233924|emb|CBY10092.1| unnamed protein product [Oikopleura dioica]
          Length = 611

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 147/392 (37%), Positives = 218/392 (55%), Gaps = 26/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  L   +  A+  A Y  PTP+Q   IP++ +  D+   AQTG+GKTA+F+LPML+ 
Sbjct: 142 FAECELGDIINEAIKLANYTVPTPVQKNAIPIINKGRDLMSCAQTGSGKTAAFLLPMLSS 201

Query: 63  L---------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
           +                +GR ++  P  L+L PTRELA+Q+ +   K+     +   ++ 
Sbjct: 202 IFHSGPGESANQNSSGYRGRRKI-YPLALVLSPTRELASQIYEESRKFAYRSQVRPCVIY 260

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG    AQ + L+RG  +L+ TPGR+ D  +RGK+ ++    L +DEADRMLDMGF P I
Sbjct: 261 GGADVGAQMRDLDRGCHLLVATPGRLADFLDRGKIGLDYCRYLCLDEADRMLDMGFEPQI 320

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   RQTL+FSAT   E+Q ++ +FL N   + V    ST++ I    V 
Sbjct: 321 RRIVEKDAMPPKGDRQTLMFSATFPKEIQHLARDFLDNYIFLTVGRVGSTSQNITQKVV- 379

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            +   + K   L  LL + D     ++F   KK    L + L  +GF    IHG+ +QR 
Sbjct: 380 -WVDENDKINFLTDLLTATDQNTCFVVFTETKKGADYLDNYLYDRGFRSTCIHGDRNQRE 438

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L +F+E    ++VA+ +AARGLDIP+V HV NFD+P+  + Y+HRIGRTGR G  G
Sbjct: 439 REGALKSFREAVTPVLVATAVAARGLDIPNVRHVINFDLPSDIDEYVHRIGRTGRVGNIG 498

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKV---DWL 371
            A +    ++   + D +E LIE K    +WL
Sbjct: 499 LATSFFNDKNSNIVRDLLELLIEAKQEVPEWL 530


>gi|14548160|gb|AAA93186.2| DEAD family RNA helicase [uncultured crenarchaeote 4B7]
          Length = 451

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 137/370 (37%), Positives = 215/370 (58%), Gaps = 8/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L ++  ++ ++ + G+  P PIQ ++IP +L+ +DV G A TGTGKTA+F +PML  
Sbjct: 4   FDELKINEDIMRSIKELGFTTPFPIQTQSIPELLRGNDVIGQAHTGTGKTAAFGIPMLQN 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +  G       + L++ PTRELA Q+ +  +K GK   + V  + GG     Q   L R 
Sbjct: 64  IIHGGG----IQGLVIAPTRELAMQITEEIKKVGKYTKIKVVTVYGGQGIGIQLDALRRK 119

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++++ TPGR++DH + G +  +NI+ +V+DEAD MLDMGFI  I+ +   +P  R T L
Sbjct: 120 PEIVVATPGRLIDHLDNGSIRTDNIKHVVLDEADVMLDMGFIEDIEYVLQKIPGNRITSL 179

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           +SATM  E+ ++S+ +L N K I +++   + E I+  F+    +   K  L   + Q++
Sbjct: 180 WSATMPPEILRLSDKYLNNAKNILIDSDDLSGEGIDQAFLVIKDREKHKY-LTDFINQNK 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+FC+ K    N+   L K  + V  I G++ Q  R   +  F++    ++VA+
Sbjct: 239 GQV---IVFCSTKIRTRNVARDLIKSRYKVVPIEGDMSQNKREYSMMKFRKNQADILVAT 295

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+D+P VG V N+DVPN+   Y HRIGRT RAG  GKA TLV+   I     I+K
Sbjct: 296 DVAARGIDVPRVGLVVNYDVPNQDMVYFHRIGRTARAGAKGKAITLVSYSSIGDWKFIKK 355

Query: 363 LIEKKVDWLN 372
            I+  +  LN
Sbjct: 356 QIKSDLTDLN 365


>gi|320185441|gb|EFW60210.1| ATP-dependent RNA helicase RhlB [Shigella flexneri CDC 796-83]
          Length = 421

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 144/373 (38%), Positives = 210/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV  +   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVVEILEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + IEV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|259149685|emb|CAY86489.1| Ded1p [Saccharomyces cerevisiae EC1118]
          Length = 604

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 139/362 (38%), Positives = 205/362 (56%), Gaps = 19/362 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRA--------- 68
           A + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+   + G +         
Sbjct: 160 ARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSF 219

Query: 69  --RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
             R   P  +I+ PTRELA Q+ D  +K+     +   ++ GG P   Q +++ERG D+L
Sbjct: 220 YQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLL 279

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----RQTLL 182
           + TPGR+ D   RGK+ + N++ LV+DEADRMLDMGF P I++I      T    RQTL+
Sbjct: 280 VATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLM 339

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT   ++Q ++ +FL +   + V    ST+E I    +    Q  KK ALL  L  S 
Sbjct: 340 FSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQ-DKKSALLDLLSAST 398

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D +   +IF   K+    L   L  Q F   AIHG+  Q  R + L+ F+ G   L+VA+
Sbjct: 399 DGLT--LIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVAT 456

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
            +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A      E+   +  + +
Sbjct: 457 AVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHE 516

Query: 363 LI 364
           ++
Sbjct: 517 IL 518


>gi|226487070|emb|CAX75400.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum]
 gi|226487074|emb|CAX75402.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum]
 gi|226487078|emb|CAX75404.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum]
          Length = 768

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 150/430 (34%), Positives = 238/430 (55%), Gaps = 25/430 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F +L +   ++  +   G+  PTPIQ +  P+ L   DV GIAQTG+GKTA+F+LP +
Sbjct: 89  LSFNELSVPDYILSVIAKNGWQLPTPIQSQGWPMALSGRDVVGIAQTGSGKTATFLLPAV 148

Query: 60  LTILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + I+ + R  R   P  L+L PTRELA QV    +++    +L      GG     Q ++
Sbjct: 149 IHIMAQPRLLRNEGPICLVLVPTRELAQQVLSVAKEFADAASLRAICFYGGSAKGTQLRE 208

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +++G ++ I TPGR++D     + L++ +  LV+DEADRMLDMGF P I+ I S V   R
Sbjct: 209 MQKGGEICIATPGRLIDFIRVQRNLLSRVTYLVLDEADRMLDMGFEPQIRKILSHVRPDR 268

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+Q ++  FL +  ++ + + S  A       V     + K+  L++ L
Sbjct: 269 QTLMWSATWPKEVQTLAREFLTDYIQVNIGSVSLHANPNITQIVEIMDDWRKEQRLIE-L 327

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S    +  ++F   K+    L +SL ++GF V A+HG   QR R   L++FK G + +
Sbjct: 328 LSSFGRSRT-LVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLASFKSGRMNI 386

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI- 357
           ++A+D+A+RGLDI ++ +V NFD PN+ E+YIHRIGRT R+ + G AFT    ++ +   
Sbjct: 387 LIATDVASRGLDIDNIEYVVNFDFPNQTEDYIHRIGRTARSDKRGTAFTFFTYKNARQAR 446

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI-----------PQKSTGF 406
           D IE L E   +        + P L ++     ++ RK+ P+           P + TGF
Sbjct: 447 DLIEILDEANQE--------ITPELIQL-AGMSSYLRKSGPLKKNPPAFQQKPPGRITGF 497

Query: 407 DRRKKNYSSQ 416
                ++ SQ
Sbjct: 498 GNSSSSFPSQ 507


>gi|254228728|ref|ZP_04922151.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262396550|ref|YP_003288403.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|151938675|gb|EDN57510.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262340144|gb|ACY53938.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
          Length = 443

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 145/413 (35%), Positives = 221/413 (53%), Gaps = 13/413 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + KPT IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKDLGLDNRLLKNLKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K ++   + PR +IL PTRELA QV           +   AL++GG  F  Q K L
Sbjct: 61  HKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYEAALILGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGR+ DH     L +  +E L++DEADRMLD+GF P ++ I       R 
Sbjct: 121 RRYPKFIVATPGRLADHLEHRSLYLEGLETLILDEADRMLDLGFAPELRRIHKAAKHRRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+   ++  ++   L +PKRI +   +   + I   F         K A+L +
Sbjct: 181 QTLMFSATLDHADVNDIAAEMLNSPKRIAIGVSNEEHKDITQKFYLC-DHLDHKEAILDR 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L S+   +  IIF   + +   L   L ++     A+ GN++Q  R  I+S F+    +
Sbjct: 240 VL-SEAEYRQVIIFTATRDDTERLTAKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLDI  V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D    
Sbjct: 299 ILVTTDVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSF 358

Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNPPLEKIDIA-QHNHARKNNPIPQKST 404
             +E  +++ +++     L G    L PP  K D   +   A+K+ P  +KS 
Sbjct: 359 KRVEAYLQQDLEFSVFEDLKGKFKGLKPP--KPDFRNKKATAKKSRPQAKKSA 409


>gi|238879720|gb|EEQ43358.1| hypothetical protein CAWG_01593 [Candida albicans WO-1]
          Length = 562

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 131/360 (36%), Positives = 200/360 (55%), Gaps = 11/360 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V D G+ KPTPIQ +  P+ L   D+ GIA TG+GKT S+ LP +  
Sbjct: 130 FDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVH 189

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L+ G      P  L+L PTREL  Q+     K+GK+  +    + GG P   Q 
Sbjct: 190 INAQPQLQYGDG----PIVLVLAPTRELTVQIQTECSKFGKSSRIRNTCVYGGAPKGPQI 245

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG ++ I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 246 RDLARGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 305

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E+Q+++ ++L +P ++ + +    A       V    ++SK+  L++
Sbjct: 306 DRQTLMWSATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVK 365

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L  + +   N I +F + K+    +   L   G+   AIHG+ +Q  R  +L  F++G 
Sbjct: 366 HLESALNEKDNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGK 425

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+AARG+D+  + HV N+D+P   E+Y+HRIGRTGR G  G A +   + + K
Sbjct: 426 TSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSK 485


>gi|147904603|ref|NP_001080569.1| ATP-dependent RNA helicase DDX42 [Xenopus laevis]
 gi|82209788|sp|Q7ZY47|DDX42_XENLA RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|27696431|gb|AAH43977.1| Ddx42-prov protein [Xenopus laevis]
          Length = 947

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 130/353 (36%), Positives = 207/353 (58%), Gaps = 3/353 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G   +++  +  + Y +PTPIQ + IP+ L   D+ GIA+TG+GKTA+F+ P+L  
Sbjct: 252 FAHFGFDEQLLHQIRKSEYTQPTPIQCQGIPVALSGRDMIGIAKTGSGKTAAFIWPILVH 311

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +  +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L+
Sbjct: 312 IMDQKELQPADGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQ 371

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I + V   RQT
Sbjct: 372 EGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIANHVRPDRQT 431

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT   +++K++ + L +P R+         E I        +   K   L ++L++
Sbjct: 432 LLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQVVEILPSGPEKWTWLTRRLVE 491

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T  + ++F  +K N   L  +L +    +  +HG++DQ  R K++S+FK+ +I ++V
Sbjct: 492 FTST-GSVLVFVTKKANAEELAANLRQDDHPLGLLHGDMDQSERNKVISDFKKKSIPVLV 550

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           A+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  ++
Sbjct: 551 ATDVAARGLDIPSIKTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTSKE 603


>gi|226357411|ref|YP_002787150.1| ATP-independent RNA helicase [Deinococcus deserti VCD115]
 gi|226319401|gb|ACO47396.1| putative ATP-independent RNA helicase [Deinococcus deserti VCD115]
          Length = 469

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 138/356 (38%), Positives = 205/356 (57%), Gaps = 8/356 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY + T IQ +++P VL+  D+   A+TG+GKT +F + +L  L+  R +V+    L+L 
Sbjct: 23  GYREMTTIQQRSLPHVLKGRDLLAQAETGSGKTVAFGIGILHRLDPARLKVQ---GLVLC 79

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA+   +  +   N+ V  L GG+P   Q   LE G  +++ TPGRI DH  
Sbjct: 80  PTRELADQVANELRRLARGEGNIKVLTLTGGVPLRHQVTSLEHGVHIVVGTPGRIRDHLA 139

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           RG + + ++  LV+DEADRM DMGF   + +I    P TRQTLLFSAT  D +++ +  F
Sbjct: 140 RGSINLEDVHTLVLDEADRMTDMGFYDEMASIVCACPRTRQTLLFSATYPDNIKQTTAEF 199

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           L +P  + V+    TA  I+  F      + ++ A + +LL     +   ++FCN + + 
Sbjct: 200 LNDPVEVVVDA-QHTATQIKQLFYEI--GFDERDAAIGRLLNHFKPLST-LVFCNTRVHC 255

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             L   L+ QGFS   +HG+++QR R +IL  F   +  ++VA+D+AARGLDI  +  V 
Sbjct: 256 RELAEELQAQGFSALGLHGDLEQRERDEILVLFSNRSCSVLVATDVAARGLDISRLDAVM 315

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
           N DV    E ++HR+GRTGRAG  G A TL +  + K +  IE   +  V W N D
Sbjct: 316 NADVSRDTEVHVHRVGRTGRAGEAGLALTLCSPNEKKWVSLIEDYQKTTVQWANLD 371


>gi|150008034|ref|YP_001302777.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503]
 gi|149936458|gb|ABR43155.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503]
          Length = 426

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 140/378 (37%), Positives = 219/378 (57%), Gaps = 19/378 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   V+  + D  + + TP+Q  TIP++L+  D+   AQTGTGKTA++VLP++
Sbjct: 1   MRFDELDLEDAVLDGLYDMNFDETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL----TVALLIG--GIPFEA 114
             L KG         +I+ PTRELA Q+    +  G  Y +     VA+  G  GI +E 
Sbjct: 61  NELSKGCHPTDAVNAVIMAPTRELAQQIDQQIQ--GFTYFIPSVSAVAVYGGTDGIAWEQ 118

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LE GAD++I TPGR+L H   G + ++ +   V+DEADRMLDMGF   I  +   +
Sbjct: 119 QKRGLEMGADIVIATPGRLLSHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQL 178

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKK 231
           P   QT++FSATM  +++ +++  L++P+ +++     P S  +T   C+        +K
Sbjct: 179 PPYCQTIMFSATMPPKIRTLAKTILKDPEEVKIAISRPPESIMQTAYICY------DPQK 232

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             +LQ L  +Q   +  IIF + K  V  L  +L++  F+V A+H +++Q  R +++  F
Sbjct: 233 LKILQDLF-TQSRPQRVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEF 291

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVA 350
           K G I ++VA+D+ ARG+DI D+  V NFD+P+  E+Y+HRIGRT R     G A T V+
Sbjct: 292 KSGHIDILVATDVVARGIDINDIKLVVNFDIPHDPEDYVHRIGRTARGTNGEGLAITFVS 351

Query: 351 KEDIKHIDAIEKLIEKKV 368
            ++      IE  +EK+V
Sbjct: 352 IDEQAQFKRIEDFLEKEV 369


>gi|21243124|ref|NP_642706.1| ATP-dependent RNA helicase DbpA [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|21108643|gb|AAM37242.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 458

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 146/381 (38%), Positives = 212/381 (55%), Gaps = 9/381 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ L LSP +   +   GY   TPIQ  ++P +LQ  DV   A TG+GKTA+F L +L 
Sbjct: 3   EFSALPLSPALAPGIDALGYTVLTPIQAHSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+    R +    L+L PTRELA QV     K      N+ + +L GG+P   Q   LE
Sbjct: 63  KLDPALTRAQ---ALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 119

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I S     RQ
Sbjct: 120 AHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT  D ++ ++   L+ P  I V    S  E I+  F      Y +K A+   LL
Sbjct: 180 SLLFSATFPDSIRTLARELLKEPVEITVEGADSAPE-IDQQFFEVDPTYRQK-AVAGLLL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +     ++ ++FCN +K V  +  SL++ GFS  A+HG+++QR R ++L  F   +  ++
Sbjct: 238 RFNP--ESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+HG A +LVA  +     A
Sbjct: 296 VASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARAQA 355

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           +E    + + W    L++  P
Sbjct: 356 LETEQGQPLKWSRAPLATARP 376


>gi|160380700|sp|A6SFW7|DBP2_BOTFB RecName: Full=ATP-dependent RNA helicase dbp2
          Length = 514

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 208/373 (55%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+  PTPIQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 104 FDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 163

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 164 INAQPLLAPGDG----PIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGGQI 219

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L +G +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 220 RDLAKGVEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQIRP 279

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT ++SAT   E++ ++ ++L    ++ + +   +A       V   +++ K+  + +
Sbjct: 280 DRQTCMWSATWPKEVRALASDYLNEFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTK 339

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L +  +   N I IF   K+   ++   L + G+   +IHG+  Q  R  +L+ FK G 
Sbjct: 340 HLEKIMEDKDNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 399

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+A+RG+D+ ++ HVFN+D PN +E+YIHRIGRTGRAG+ G A TL   ++ K
Sbjct: 400 SPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITLFTTDNQK 459

Query: 356 HI-DAIEKLIEKK 367
              D +  L E K
Sbjct: 460 QARDLVNVLTEAK 472


>gi|261823430|ref|YP_003261536.1| ATP-dependent RNA helicase RhlB [Pectobacterium wasabiae WPP163]
 gi|261607443|gb|ACX89929.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 430

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 140/369 (37%), Positives = 210/369 (56%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P+V+ A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKTLAFLASTFHY 70

Query: 63  L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L         +   PR LI+ PTRELA Q+  + E       L + L  GG  ++ Q K 
Sbjct: 71  LLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILVGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAAA 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q LL+ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F +G 
Sbjct: 248 QTLLE-EEWPDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGN 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG+ G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLACEEYAL 366

Query: 356 HIDAIEKLI 364
           ++ AIE  I
Sbjct: 367 NLPAIETYI 375


>gi|47459115|ref|YP_015977.1| DEAD-box ATP-dependent RNA helicase [Mycoplasma mobile 163K]
 gi|47458444|gb|AAT27766.1| DEAD-box ATP-dependent RNA helicase [Mycoplasma mobile 163K]
          Length = 557

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 135/371 (36%), Positives = 221/371 (59%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +  K++  +   G+  PT IQ   I    +  ++ G AQTGTGKTA+F + ++
Sbjct: 1   MKFQELDIDDKIINNLKKIGFEAPTQIQELVISTANKNQNILGCAQTGTGKTAAFGVSII 60

Query: 61  TILEKGRARVRMPR--TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNK 117
             + K +         TLIL PTREL+ QV +N + +  N  +T   + GG+   E+   
Sbjct: 61  NKILKNKKNNAKSSLTTLILVPTRELSVQVNENIKLFSSNLPITSLAIYGGMRNRESHFS 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             +RG D+++ TPGR+LD+   GKL ++ ++ +V+DEAD M+DMGFI  ++ I       
Sbjct: 121 IFKRGLDIIVATPGRLLDYIKSGKLSLSQVDTVVLDEADLMVDMGFIDDVKEILKRTKEE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +Q +LFSATM   +  + E+F+   + I+  + +   + IEH  +A +   SK   LLQQ
Sbjct: 181 KQVMLFSATMPKAIMNLVEDFMGKFELIQTESFAKPLQNIEH--LAYFYTSSKPVELLQQ 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+ ++ + + I+F   K++  N+ + L K    + ++HG+  Q SR +IL +FKEG IQ
Sbjct: 239 MLK-EEKIYSAIVFVKTKRDADNVENLLSKMKLKIDSLHGDKTQASRSRILRSFKEGKIQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A+RG+DI D+ HVFN ++P   E Y HR+GRTGRA + GKA +  +K D   +
Sbjct: 298 ILVATDVASRGIDIDDISHVFNLNIPEDPEIYTHRVGRTGRASKVGKAISFFSKRDFFLL 357

Query: 358 DAIEKLIEKKV 368
             +EK I+ ++
Sbjct: 358 AKVEKEIKMEI 368


>gi|284029039|ref|YP_003378970.1| DEAD/DEAH box helicase domain-containing protein [Kribbella flavida
           DSM 17836]
 gi|283808332|gb|ADB30171.1| DEAD/DEAH box helicase domain protein [Kribbella flavida DSM 17836]
          Length = 715

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 132/347 (38%), Positives = 192/347 (55%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL+P++V  +   G   P PIQ  TIP  L   DV G  QTG+GKT  F LP L  
Sbjct: 270 FSALGLAPRLVQRLARDGITAPFPIQTATIPDALAGKDVLGRGQTGSGKTLGFGLPTLMR 329

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G    R PR +IL PTRELA QV D  E       ++V L+ GG+P+  Q   L RG
Sbjct: 330 LAGGHTESRRPRGMILVPTRELAMQVHDALEPLAHVMGVSVKLIAGGLPYPKQIDALRRG 389

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI TPGR++D   +G   +  +E+ V+DEAD M DMGF+P +  +  + P   Q LL
Sbjct: 390 VDLLIATPGRLIDLCEQGAADLGAVEVAVLDEADHMCDMGFMPAVTTLLDMTPKEGQRLL 449

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ +++  + + +L++P      +  ++  T+EH  +     + +    L   L S+
Sbjct: 450 FSATLDNDVDTIVKTYLKDPVTHSTESGQASVTTMEHHLLVIEPGHKQS---LTAELASR 506

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D     IIF   K     +   L  +G    A+HG + Q +R + L  FK+G++ ++VA+
Sbjct: 507 DGRT--IIFVRTKLGADRVATQLRDRGVMAAALHGGLTQGARNRTLDQFKDGSVPVLVAT 564

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+ + DVG V   D P   ++Y+HR GRT RAG  G   TL+
Sbjct: 565 DVAARGIHVDDVGLVVQADPPAEHKDYLHRAGRTARAGGKGAVVTLL 611


>gi|313235130|emb|CBY25002.1| unnamed protein product [Oikopleura dioica]
          Length = 653

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 141/372 (37%), Positives = 207/372 (55%), Gaps = 12/372 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF    L P +   V  A Y  PTP+Q   +P++    D+   AQTG+GKTA+F++PML+
Sbjct: 198 DFVSAELGPIITENVKLAHYTVPTPVQKYAVPIIHAGRDIMSCAQTGSGKTAAFLMPMLS 257

Query: 62  -------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   + + ++R   P  L+L PTREL  Q+     K+     +   ++ GG     
Sbjct: 258 NIFHNPGKIPRHQSRKAYPLALVLSPTRELTNQIYQEALKFAYRSKVRPCVIYGGADVGE 317

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L RG  +L+ TPGR+ D   RGK+ +     L +DEADRMLDMGF P I+ I   V
Sbjct: 318 QLRDLSRGCHLLVATPGRLADFLERGKVGLEFCRFLCLDEADRMLDMGFEPQIRRIIEKV 377

Query: 175 --PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
             P  RQTL+FSAT   ++Q ++ +FL N   + V    ST+  I   F   Y Q ++K 
Sbjct: 378 IFPSDRQTLMFSATFPKQIQALASDFLDNYIFLAVGRVGSTSANITQRF--EYVQETEKV 435

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L +LL++   M   I+F   KK    L H L ++G+    IHG+ +Q+ R + +  FK
Sbjct: 436 RKLCELLENGQEMLT-IVFTETKKGADYLDHFLHERGYQSTCIHGDRNQQEREEAVHLFK 494

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+ +AARGLDIP+V HV NFD+P+  + Y+HRIGRTGRAG  G A     ++
Sbjct: 495 SGQTPILVATAVAARGLDIPNVRHVINFDLPSEIDEYVHRIGRTGRAGNTGWATAFYNEK 554

Query: 353 DIKHIDAIEKLI 364
           + K  D + +L+
Sbjct: 555 NAKISDDLLQLL 566


>gi|254580545|ref|XP_002496258.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
 gi|238939149|emb|CAR27325.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
          Length = 494

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 144/377 (38%), Positives = 218/377 (57%), Gaps = 14/377 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L P+++ A  +  + KPTPIQ + IP  L+  D+ G+AQTG+GKTA+F +P+L  
Sbjct: 74  FNDLNLVPELIEACKNLNFDKPTPIQARAIPPALEGRDIIGLAQTGSGKTAAFAIPILNR 133

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L + +         +L PTRELA Q  + F+  G    +    ++GG+    Q ++L R 
Sbjct: 134 LWEDKQPYY---ACVLAPTRELAQQTKETFDSLGALMGVRSTCIVGGMNMMDQARELMRK 190

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180
             ++I TPGR++DH    K   +  +  LV+DEADR+LDM F P +  I  ++P   R T
Sbjct: 191 PHIIIATPGRLMDHLENTKGFSLRKLRFLVMDEADRLLDMEFGPVLDKILKVIPTQDRTT 250

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+    L  P +  V+    T +T+    +   +    K   L  LL 
Sbjct: 251 YLFSATMTSKIDKLQRASLTEPVKCAVSNKYQTVDTLVQTLMVVPSGL--KNTYLIYLL- 307

Query: 241 SQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++  K  IIF   K N   +  LC+ LE   F+  A+HG+++Q  R   L  FK G   
Sbjct: 308 NENIGKTVIIFTRTKANAERLSALCNLLE---FNATALHGDLNQNQRTGALDLFKAGRRS 364

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV++ D++ I
Sbjct: 365 ILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELI 424

Query: 358 DAIEKLIEKKVDWLNGD 374
             IE+++ KK+   N D
Sbjct: 425 LRIEEVLGKKLPKENCD 441


>gi|238759816|ref|ZP_04620973.1| ATP-dependent RNA helicase rhlB [Yersinia aldovae ATCC 35236]
 gi|238701959|gb|EEP94519.1| ATP-dependent RNA helicase rhlB [Yersinia aldovae ATCC 35236]
          Length = 428

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 139/366 (37%), Positives = 213/366 (58%), Gaps = 11/366 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P+V+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPQVIEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY 70

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     E+GR +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 71  LLSHPAEEGR-QTNQPRALIMAPTRELAVQIHSDAESLSQMTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV 189

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R  +LFSAT++  +++++   + N + +EV     T   I+      Y    +K  LL
Sbjct: 190 DKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELF--YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL +F +G 
Sbjct: 248 QTLIE-EEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYAL 366

Query: 356 HIDAIE 361
           ++ AIE
Sbjct: 367 NLPAIE 372


>gi|261213074|ref|ZP_05927358.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
 gi|260838139|gb|EEX64816.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
          Length = 448

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 142/389 (36%), Positives = 211/389 (54%), Gaps = 12/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   + PR +IL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 61  HKSLKTKAFSAKDPRGVILVPTRELAKQVYGELRSMLAGLSYTATLITGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            RG   ++ TPGR+ DH +   L +  +E LV+DEADRMLD+GF   ++ I +     R 
Sbjct: 121 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   ++  ++   L  PKRI +   S   + I +H ++  +  +  K ALL 
Sbjct: 181 QTLMFSATLDHADVNDMAMEMLNEPKRIAIGIGSEEHKDITQHFYLCDHLDH--KEALLD 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L   +  +  IIF   + +   L   L K      A+ GN++Q  R  I+S F+    
Sbjct: 239 RILADAE-YRQVIIFTATRADTDRLTEKLNKSNLKAVALSGNLNQTQRNTIMSQFERTVF 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++V +D+A+RGLDIP V HV NFD+P   E Y+HRIGRTGRAG  G A +LV  +D   
Sbjct: 298 KILVTTDVASRGLDIPSVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAMSLVGPKDWDS 357

Query: 357 IDAIEKLIEKKVDW-----LNGDLSSLNP 380
              +E  +++ + +     L G    L P
Sbjct: 358 FKRVEAFLQQDIQFEVLEGLQGKFKGLKP 386


>gi|70663484|emb|CAJ15141.1| PL10b protein [Platynereis dumerilii]
          Length = 816

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 148/384 (38%), Positives = 223/384 (58%), Gaps = 22/384 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA+L L   V   ++ + Y KPTP+Q   +P++ ++ D+   AQTG+GKTASF++P+L+ 
Sbjct: 336 FAELELGEIVDSNIVLSKYTKPTPVQKHAMPIIKKKRDLMACAQTGSGKTASFLVPVLSQ 395

Query: 62  ---------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                    I E+     R + P  L+L PTRELA+Q+ +   K+    ++   ++ GG 
Sbjct: 396 MFLDGQPEFIREQNNRNNRKQYPIALVLAPTRELASQIYEEARKFAYRSHVRPCVVYGGA 455

Query: 111 PFEAQNKKL-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
              AQ + L ERG  +L+ TPGR++D   RGK+ +++I  +V+DEADRMLDMGF P I+ 
Sbjct: 456 DIGAQMRDLPERGCHLLVATPGRLVDMLERGKIGLDHIRFVVLDEADRMLDMGFEPQIRR 515

Query: 170 ITS--LVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I     +P T  R+TL+FSAT   E+Q ++ +FL N   + V    ST+E I    V  +
Sbjct: 516 IVEKDTMPPTGDRRTLMFSATFPKEIQILARDFLHNYIFLAVGRVGSTSENITQKVV--W 573

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            +   K + L  LL +       ++F   KK    L + L  +G+    IHG+  Q+ R 
Sbjct: 574 VEEPDKRSFLLDLLNASGPDSLTLVFVETKKGADALDNFLYNEGYPSACIHGDRSQKERE 633

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L NF+ G   ++VA+ +AARGLDIP+V HV NFD+P+  E Y+HRIGRTGR G  G A
Sbjct: 634 EALRNFRSGKTPVLVATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 693

Query: 346 FTLVAKEDIKHI--DAIEKLIEKK 367
            +    ++ K+I  D ++ LIE K
Sbjct: 694 TSFFNDKN-KNIVRDMVDLLIEAK 716


>gi|195388290|ref|XP_002052813.1| GJ17767 [Drosophila virilis]
 gi|194149270|gb|EDW64968.1| GJ17767 [Drosophila virilis]
          Length = 835

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 132/382 (34%), Positives = 209/382 (54%), Gaps = 34/382 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + G  P+++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L+ 
Sbjct: 409 WNESGFPPEIIEIIDTVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSW 468

Query: 63  LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           ++      R+      P  +I+ PTRELA Q+ +   K+G+   +   +++GG+  E Q 
Sbjct: 469 IQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETIKFGQPLGIRTVVVVGGLSREEQG 528

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 529 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 588

Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           T                         RQT++F+ATM   +++++ ++L+ P  + + +  
Sbjct: 589 TNLKPDSEEAEDEKKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG 648

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
              E      V    +  K+  L+Q L  S       IIF NQKK    L   LEK G++
Sbjct: 649 KPTERTNQ-IVYMMGENDKRKKLMQIL--SAGIEPPVIIFVNQKKGADVLAKGLEKLGYN 705

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
            C +HG   Q  R   L+  K G   ++VA+D+A RG+DI DV  V N+D+    E+Y H
Sbjct: 706 SCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTH 765

Query: 332 RIGRTGRAGRHGKAFTLVAKED 353
           RIGRTGRAG+ G A + V K+D
Sbjct: 766 RIGRTGRAGKTGVAISFVTKDD 787


>gi|195032613|ref|XP_001988529.1| GH11216 [Drosophila grimshawi]
 gi|193904529|gb|EDW03396.1| GH11216 [Drosophila grimshawi]
          Length = 864

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 132/382 (34%), Positives = 208/382 (54%), Gaps = 34/382 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + G  P+++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L+ 
Sbjct: 438 WNESGFPPEIIEIIDTVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSW 497

Query: 63  LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           ++      R+      P  +I+ PTRELA Q+ +   K+G+   +   +++GG+  E Q 
Sbjct: 498 IQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETIKFGQPLGIRTVVVVGGLSREEQG 557

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 558 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 617

Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           T                         RQT++F+ATM   +++++  +L+ P  + + +  
Sbjct: 618 TNLKPDTEEAEDEKKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVG 677

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
              E      V    +  K+  L+Q L  S       IIF NQKK    L   LEK G++
Sbjct: 678 KPTERTNQ-IVYMMGENDKRKKLMQIL--SAGIEPPVIIFVNQKKGADVLAKGLEKLGYN 734

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
            C +HG   Q  R   L+  K G   ++VA+D+A RG+DI DV  V N+D+    E+Y H
Sbjct: 735 SCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTH 794

Query: 332 RIGRTGRAGRHGKAFTLVAKED 353
           RIGRTGRAG+ G A + V K+D
Sbjct: 795 RIGRTGRAGKTGVAISFVTKDD 816


>gi|294673582|ref|YP_003574198.1| DEAD/DEAH box helicase [Prevotella ruminicola 23]
 gi|294472821|gb|ADE82210.1| ATP-dependent helicase, DEAD/DEAH box family [Prevotella ruminicola
           23]
          Length = 446

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 219/377 (58%), Gaps = 12/377 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L+  ++ A+ D  +   TPIQ + IP +L  +DV G+AQTGTGKTA+++LP+L
Sbjct: 1   MKFEETYLNDNILDALYDMHFEDMTPIQEQCIPEILDGYDVLGVAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL----TVALLIG--GIPFEA 114
           + L+ G         +I+ PTRELA Q+    + +G  Y L    +VA+  G  G  ++ 
Sbjct: 61  SELDDGDYPKDAINAVIMSPTRELAQQIDQAMQGFG--YYLDDVSSVAVYGGNDGNRYDQ 118

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           + + +  GADVLI TPGR+L H   G L ++     V+DEADRMLDMGFI  I  I   +
Sbjct: 119 ELRSMRMGADVLIATPGRLLSHLKVGNLDLSRCSFFVLDEADRMLDMGFIEDIMKIVKEL 178

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P + Q ++FSATM  ++++++   L NP  I++   S  AE I       Y    +K  +
Sbjct: 179 PASCQRIMFSATMPKKIRELAVQLLHNPVEIQIAV-SKPAEKIHQMAYVCYE--PQKLKI 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +Q + +  D ++  IIF  +K+ V  +   L+    +   +H ++ Q  R + +  FK G
Sbjct: 236 IQDIFKKGD-LQRVIIFSGKKERVKEVTRKLKSMHINCDQMHSDLSQAERDEAMYRFKAG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA R G+A T V+ +D+
Sbjct: 295 QTDVLVATDIVARGIDIDDIRLVINYDVPSDSEDYVHRIGRTARADRDGEAITFVSDDDM 354

Query: 355 KHIDAIEKLIEKKVDWL 371
               +IE  + K+V+ L
Sbjct: 355 YRFQSIEHFLGKEVEKL 371


>gi|256074311|ref|XP_002573469.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238658649|emb|CAZ29701.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 879

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 138/351 (39%), Positives = 203/351 (57%), Gaps = 6/351 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++ G    ++  +  + +  PTPIQ +  P+ L   D+ GIAQTG+GKTASF+LP + +
Sbjct: 79  FSEAGFPSYIMSVIKKSKWDSPTPIQCQGWPVALSGRDLVGIAQTGSGKTASFLLPAI-V 137

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             K +  ++    P  LIL PTRELA QV    E +  +     A L GG     Q + L
Sbjct: 138 HAKAQPSLKRGDGPIVLILVPTRELAQQVEKVAEDFCYSAGFKSACLYGGASRTGQAEAL 197

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  +V+I TPGR+LD        M     LV+DEADRMLDMGF P I+ + S V   RQ
Sbjct: 198 GQSPEVVIATPGRLLDFLESRHTNMRRCTYLVLDEADRMLDMGFEPSIRRVVSQVRPDRQ 257

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E++ ++E+FL +  +I V +   +A       V    + S+K   L  LL
Sbjct: 258 TLMWSATWPREVKALAEDFLYDYIQINVGSTKLSANHNIRQHVEILNE-SEKFKRLLSLL 316

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S D  +  ++F   KK    LC  L+ +GF   A+HG+  Q+ R + L  F+EG I ++
Sbjct: 317 NSFDNAR-VLVFTETKKRTDELCQKLQDKGFDATAMHGDKHQKERDRALDMFREGHISVL 375

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           VA+D+A+RGLDI DV ++ N+D P++ E+YIHRIGRTGR+ + G A+T  +
Sbjct: 376 VATDVASRGLDINDVRYIINYDYPSQTEDYIHRIGRTGRSDKKGTAYTFFS 426


>gi|224088162|ref|XP_002308349.1| predicted protein [Populus trichocarpa]
 gi|222854325|gb|EEE91872.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 146/381 (38%), Positives = 214/381 (56%), Gaps = 19/381 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++ L   V   +    YVKPTP+Q   IP++L   D+   AQTG+GKTA+F  P++  
Sbjct: 54  FAEIDLGEAVNQNIRRCKYVKPTPVQRNAIPILLAGRDLMACAQTGSGKTAAFCFPIIAG 113

Query: 63  LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           + + +        R   P  LIL PTREL+ Q+ D  +K+     + V ++ GG P   Q
Sbjct: 114 IMREQYVQRPHGGRTVYPLALILSPTRELSCQIHDEAKKFAYQTGVKVVVVYGGAPVNQQ 173

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++LERG DVL+ TPGR++D   R ++ +  I  L +DEADRMLDMGF P I+ I   + 
Sbjct: 174 LRELERGVDVLVATPGRLVDLVERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMD 233

Query: 176 FT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQT+LFSAT   E+Q+++ +FL N   + V    S+ + I       Y   + K
Sbjct: 234 MPPCGRRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQ--RVEYVHETDK 291

Query: 232 CALLQQLLQSQ-DTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            + L  LL +Q +T  NG     ++F   KK   +L H L    F   +IHG+  Q+ R 
Sbjct: 292 RSHLMDLLHAQRETEVNGKHSLTLVFVETKKGADSLEHWLYVNKFPATSIHGDRSQQERE 351

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G A
Sbjct: 352 MALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLA 411

Query: 346 FTLVAKEDIKHIDAIEKLIEK 366
                + ++     +  L+++
Sbjct: 412 TAFFNENNLSLARPLADLMQE 432


>gi|150864621|ref|XP_001383517.2| ATP-dependent rRNA helicase RRP3 [Scheffersomyces stipitis CBS
           6054]
 gi|149385877|gb|ABN65488.2| ATP-dependent rRNA helicase RRP3 [Scheffersomyces stipitis CBS
           6054]
          Length = 396

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 135/352 (38%), Positives = 206/352 (58%), Gaps = 13/352 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           + KPTPIQ + IP  L+  D+ G+AQTG+GKTA+F +P+L  L + +        L+L P
Sbjct: 3   FSKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQTPYF---GLVLAP 59

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
            RELA Q+ + F+  G    +    L+GG+    Q + L R   ++I TPGRI+DH    
Sbjct: 60  ARELAYQIKETFDALGSTMGVRTVCLVGGMDMMDQARDLMRKPHIIIATPGRIMDHLEHT 119

Query: 141 K-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
           K   +  ++  V+DEAD++LD+ F P +  I   +P  R T LFSATMT++++K+    L
Sbjct: 120 KGFSLKMLKYFVMDEADKLLDLEFGPVLDKILKQIPSKRTTYLFSATMTNKIEKLQRASL 179

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
            NP R+ V++   TA+ +    +     Y  K   L  LL ++   K+ IIF   + +  
Sbjct: 180 HNPVRVAVSSKYQTADNLIQSMMLVSDGY--KNTYLIHLL-NEFVGKSIIIFARTRAHTQ 236

Query: 260 N---LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
               LC  L   GFS   +HG++ Q  R+  L+ FK GT  +++A+D+AARGLDIP V  
Sbjct: 237 RTSILCRIL---GFSAVPLHGDLTQAQRLGSLNKFKSGTANILIATDVAARGLDIPSVDV 293

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           V N+D+P  ++ Y+HR+GRT RAGR GK+ +LV + D++    IE+ I+KK+
Sbjct: 294 VINYDIPTDSKAYVHRVGRTARAGRSGKSISLVTQYDLEMYLRIEQSIQKKL 345


>gi|256840789|ref|ZP_05546297.1| ATP-dependent RNA helicase [Parabacteroides sp. D13]
 gi|298376614|ref|ZP_06986569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_19]
 gi|301309869|ref|ZP_07215808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           20_3]
 gi|256738061|gb|EEU51387.1| ATP-dependent RNA helicase [Parabacteroides sp. D13]
 gi|298266492|gb|EFI08150.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_19]
 gi|300831443|gb|EFK62074.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           20_3]
          Length = 426

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 140/378 (37%), Positives = 219/378 (57%), Gaps = 19/378 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   V+  + D  + + TP+Q  TIP++L+  D+   AQTGTGKTA++VLP++
Sbjct: 1   MRFDELDLEDAVLDGLYDMNFDETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL----TVALLIG--GIPFEA 114
             L KG         +I+ PTRELA Q+    +  G  Y +     VA+  G  GI +E 
Sbjct: 61  NELSKGCHPTDAVNAVIMAPTRELAQQIDQQIQ--GFTYFIPSVSAVAVYGGTDGIAWEQ 118

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LE GAD++I TPGR+L H   G + ++ +   V+DEADRMLDMGF   I  +   +
Sbjct: 119 QKRGLEMGADIVIATPGRLLSHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQL 178

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKK 231
           P   QT++FSATM  +++ +++  L++P+ +++     P S  +T   C+        +K
Sbjct: 179 PPYCQTIMFSATMPPKIRTLAKTILKDPEEVKIAISRPPESIMQTAYICY------DPQK 232

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             +LQ L  +Q   +  IIF + K  V  L  +L++  F+V A+H +++Q  R +++  F
Sbjct: 233 LKILQDLF-TQSRPQRVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEF 291

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVA 350
           K G I ++VA+D+ ARG+DI D+  V NFD+P+  E+Y+HRIGRT R     G A T V+
Sbjct: 292 KSGHIDILVATDVVARGIDINDIKLVVNFDIPHDPEDYVHRIGRTARGTNGEGLAITFVS 351

Query: 351 KEDIKHIDAIEKLIEKKV 368
            ++      IE  +EK+V
Sbjct: 352 IDEQAQFKRIEDFLEKEV 369


>gi|242222657|ref|XP_002477039.1| predicted protein [Postia placenta Mad-698-R]
 gi|220723636|gb|EED77767.1| predicted protein [Postia placenta Mad-698-R]
          Length = 389

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 143/374 (38%), Positives = 210/374 (56%), Gaps = 16/374 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   ++ A+    +  PT IQ++ +P  LQ  D+ G+A TG+GKTA+F LP+L  
Sbjct: 21  FKSLGLIDPLLEALEQLNFKIPTEIQVQALPHALQGRDIIGVASTGSGKTAAFALPILQK 80

Query: 63  LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L +       P+ L   I+ PTRELA Q++   E  G    +    L+GG+   AQ   L
Sbjct: 81  LWEE------PKGLFACIMAPTRELAYQISQQIEALGSAMGVRCVTLVGGMDKMAQAVAL 134

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +++ TPGR+ DH    K   +  ++ LV+DEADR+LDM F P I  I   +P  R
Sbjct: 135 AKRPHIVVATPGRLNDHLEDTKGFSLRGLKFLVLDEADRLLDMDFGPIIDKILKAIPRER 194

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237
            T LFSATMT ++ K+    L NP R+EV+   ST  T+ ++       Q       L  
Sbjct: 195 TTYLFSATMTTKVAKLQRASLSNPVRVEVSEKYSTVSTLLQYYLFIPLVQKDVHLIYLAN 254

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L +Q+++   IIF     +   L   L   GF    +HG + Q +R+  L  FK G  +
Sbjct: 255 IL-AQNSI---IIFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSARLGALGKFKSGGRK 310

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ TLV + D++ I
Sbjct: 311 VLVATDVASRGLDIPHVDVVINYDIPTHSKDYIHRVGRTARAGRSGKSITLVTQYDVELI 370

Query: 358 DAIEKLIEKKVD-W 370
             IE  I KK++ W
Sbjct: 371 QRIETTIGKKMELW 384


>gi|172040180|ref|YP_001799893.1| putative ATP-dependent RNA helicase [Corynebacterium urealyticum
           DSM 7109]
 gi|171851484|emb|CAQ04460.1| putative ATP-dependent RNA helicase [Corynebacterium urealyticum
           DSM 7109]
          Length = 497

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 142/375 (37%), Positives = 210/375 (56%), Gaps = 17/375 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG++ ++  A+  AG      IQ  T+P+ L+  D+ G A+TG GKT  F +P+L  
Sbjct: 20  FRSLGVAAEIAEALEQAGMPTAFAIQELTLPIALRGDDLIGQARTGMGKTLGFGVPLLDR 79

Query: 63  LEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKN-------YNLTVALLIGGIPF 112
           +        +    R L++ PTREL  QVA++      N       + +TV  + GG+ F
Sbjct: 80  IFDDAGITELDGSVRGLVVVPTRELCLQVAEDLTLATANLVIPANDHRVTVTPIYGGVGF 139

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q + L RG DV++ TPGR+LD   RG+L ++ +E+LV+DEAD MLD GF+  I+ I S
Sbjct: 140 NQQIRALSRGTDVVVGTPGRLLDLHRRGELELSGVEVLVLDEADEMLDQGFLDDIRQIMS 199

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L    RQT+LFSATM   +  +S  F++ P  I+ +   STA    H  V   A  S K 
Sbjct: 200 LTSPDRQTMLFSATMPGPVLSLSREFMKQPVMIQAD---STAAADTHERVTQIAFQSHKL 256

Query: 233 ---ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
              + L ++LQS    +  I+F   K+    +   L   GF V A+HG++ Q  R + L 
Sbjct: 257 DRMSTLSRILQSPGRGRT-IVFTPTKRQAAMVAEDLAAWGFRVGAVHGDMRQADREQSLQ 315

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F++G + +MVA+D+AARG+D+ DV HV N+ VP     Y+HRIGRT RAG+ G A TLV
Sbjct: 316 LFRDGAVDVMVATDVAARGIDVTDVTHVVNYQVPEDERTYVHRIGRTARAGKDGTAITLV 375

Query: 350 AKEDIKHIDAIEKLI 364
             +++   D I + +
Sbjct: 376 GWDEVPRWDHISEAL 390


>gi|227524|prf||1705300A ATP dependent RNA helicase
          Length = 604

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 139/362 (38%), Positives = 205/362 (56%), Gaps = 19/362 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRA--------- 68
           A + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+   + G +         
Sbjct: 160 ARFTKPTPVQKYSVPIVANGRDLKACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSF 219

Query: 69  --RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
             R   P  +I+ PTRELA Q+ D  +K+     +   ++ GG P   Q +++ERG D+L
Sbjct: 220 YQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLL 279

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----RQTLL 182
           + TPGR+ D   RGK+ + N++ LV+DEADRMLDMGF P I++I      T    RQTL+
Sbjct: 280 VATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLM 339

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT   ++Q ++ +FL +   + V    ST+E I    +    Q  KK ALL  L  S 
Sbjct: 340 FSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQ-DKKSALLDLLSAST 398

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D +   +IF   K+    L   L  Q F   AIHG+  Q  R + L+ F+ G   L+VA+
Sbjct: 399 DGLT--LIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVAT 456

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
            +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A      E+   +  + +
Sbjct: 457 AVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHE 516

Query: 363 LI 364
           ++
Sbjct: 517 IL 518


>gi|261251704|ref|ZP_05944278.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
 gi|260938577|gb|EEX94565.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
          Length = 412

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 217/368 (58%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L  S +++ A L  G+ KPT IQ   IP ++   DV  +A TG+GKT ++ LP+L
Sbjct: 1   MSFSTLSFSSELIHA-LPQGFQKPTDIQALAIPELMAGKDVLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK +A  +  + L+L PTRELA QV++   + G+   L    L GG+  E Q + L 
Sbjct: 60  ---EKLKADTKQ-QALVLVPTRELAIQVSEALNQVGQTLGLNAVCLCGGVDKELQQQALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR++D  N G L ++ ++ LV+DEADR+LDMGF P +Q I S V   RQT
Sbjct: 116 DSPNILVATTGRLVDLANNG-LDLSQVDYLVLDEADRLLDMGFWPDVQTIASQVSAKRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT +D+L++ ++  +  PK++  +  +ST + I         + SK  AL++  L 
Sbjct: 175 AMFSATFSDDLKQKAQQLMLAPKQVAAHQENSTNQDIAETLYLVN-KGSKTKALIE--LI 231

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+T    ++F   K+N   L   L K G +  A+HGN  Q  R + L+ FK G   +++
Sbjct: 232 KQNTWSQVLVFIGAKENADGLAKKLNKAGITTNALHGNKSQVEREEALTLFKSGKTNVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   + + ++AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGKQGVAMSLVCHGETEALNAI 351

Query: 361 EKLIEKKV 368
            +L ++++
Sbjct: 352 RQLTQREL 359


>gi|323964518|gb|EGB59993.1| DEAD/DEAH box helicase [Escherichia coli M863]
          Length = 398

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 140/377 (37%), Positives = 219/377 (58%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F    L +L+K  
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAF---GLGLLQKID 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ + +LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNMLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAITAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L   G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNDIGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W    ++S   PLE
Sbjct: 363 KLNWQTPPVNSSIVPLE 379


>gi|322703417|gb|EFY95026.1| ATP-dependent rRNA helicase RRP3 [Metarhizium anisopliae ARSEF 23]
          Length = 478

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 149/420 (35%), Positives = 231/420 (55%), Gaps = 27/420 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F +LG+   +  A     Y  PTPIQ K+IP+ LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 59  FKELGIVDSLCEACESLNYKFPTPIQEKSIPIALQDRDIIGLAETGSGKTAAFALPILQA 118

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+K +        L+L PTRELA Q+   FE  G + +L  A+++GG+    Q   L +
Sbjct: 119 LLDKPQPLF----GLVLAPTRELAHQIGQAFEALGSSISLRCAVIVGGLDMVPQAVALGK 174

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR++DH  + K   +  ++ LV+DEADR+LDM F P I  +   +P  R+T
Sbjct: 175 KPHIIVATPGRLVDHLEKTKGFSLRTLKYLVMDEADRLLDMDFGPAIDKLLKFIPRERRT 234

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            LFSAT++ +++ +    L++P R+ V  N   + +  +++  V    Q  K   L+   
Sbjct: 235 YLFSATLSSKVESLQRASLRDPVRVSVSSNKYQTVSTLLQNLLVV--PQKRKDTYLI--Y 290

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L ++ T K+ I+F         +   L   GF    +HG + Q +R+  L+ F+ GT  +
Sbjct: 291 LVNEFTGKSTIVFTRTVWETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFRSGTRDI 350

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  V  V N+D+P  ++ YIHR+GRT RAG+ G A +LV + DI+   
Sbjct: 351 LVATDVAARGLDISKVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISLVTQYDIEIFQ 410

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH----ARKNNPIPQKSTGF--DRRKKN 412
            IE  + KK+D           P EK ++    H    A++   I  KS     DRR K 
Sbjct: 411 RIEAALGKKLDIY---------PTEKEEVLAFQHRVEEAQREARIEMKSLSEKKDRRGKG 461


>gi|160940589|ref|ZP_02087933.1| hypothetical protein CLOBOL_05484 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436549|gb|EDP14316.1| hypothetical protein CLOBOL_05484 [Clostridium bolteae ATCC
           BAA-613]
          Length = 490

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 131/362 (36%), Positives = 210/362 (58%), Gaps = 6/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GLS ++   +   GY  PT +Q + +P VL   +V   +QTGTGKTA+F +P   +
Sbjct: 13  FGGYGLSGEITETLALLGYEHPTRVQEEVLPHVLAGRNVVVRSQTGTGKTAAFAIP---V 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E+      +P+ L+LEP+RELA QV+    + G+   L V  + GG P + Q + L + 
Sbjct: 70  CEQIVWEENLPQALVLEPSRELAVQVSQEIFRIGRKKRLKVPAVFGGFPIDKQIQTLRQK 129

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++DH  RG L +  +  LVIDEAD MLDMGF+  ++ I  L+P  RQTLL
Sbjct: 130 THIVVGTPGRVMDHVRRGSLKLTGVRYLVIDEADLMLDMGFMDEVRQIVGLLPEKRQTLL 189

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++ ++E  +++   + +     T   I    V   AQ  K  A  + L+  +
Sbjct: 190 FSATLDEDVKNLAEETVKDAVSVFLEQEGETPLPIRQS-VYGVAQDQKYTAFKRVLM--K 246

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  +  +IFC  ++ V  L   L +       IHG+++Q+ R+K +  F+ G  + ++A+
Sbjct: 247 ENPERAMIFCGTREMVQVLFQKLRRDRIFCGMIHGDMEQKERLKNVDAFRRGGFRYLIAT 306

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+D  DVG V N+D P   E Y+HRIGRTGR G+ G+A +LV +++I+ +   E 
Sbjct: 307 DVAARGIDFEDVGLVVNYDFPMGRETYVHRIGRTGRNGKAGRAASLVTEDEIRTLHKAEA 366

Query: 363 LI 364
            +
Sbjct: 367 YV 368


>gi|148184|gb|AAA67581.1| unknown [Escherichia coli str. K-12 substr. MG1655]
          Length = 421

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 144/373 (38%), Positives = 210/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + IEV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AA GL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAAXGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|15803103|ref|NP_289134.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 EDL933]
 gi|12516997|gb|AAG57692.1|AE005488_3 ATP-dependent RNA helicase [Escherichia coli O157:H7 str. EDL933]
          Length = 444

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 138/356 (38%), Positives = 205/356 (57%), Gaps = 4/356 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73
           A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  +L+  R +   P
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +      D+++ T GR+
Sbjct: 78  RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQ 192
           L +          +E L+ DEADRMLDMGF   I++I     + +QTLLFSAT+  D +Q
Sbjct: 138 LQYIKEENFDCRAVETLIXDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
             +E  L++P  +  N PS+      H +         K ALL  LL+  +  ++ I+F 
Sbjct: 198 DFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFV 255

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
            +++ V  L + L + G + C + G + Q  R + +    EG + ++VA+D+AARG+DIP
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           DV HVFNFD+P   + Y+HRIGRT RAGR G A +LV   D   +  + + IE+ +
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371


>gi|116195380|ref|XP_001223502.1| hypothetical protein CHGG_04288 [Chaetomium globosum CBS 148.51]
 gi|118595827|sp|Q2H1Q8|RRP3_CHAGB RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|88180201|gb|EAQ87669.1| hypothetical protein CHGG_04288 [Chaetomium globosum CBS 148.51]
          Length = 493

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 137/369 (37%), Positives = 215/369 (58%), Gaps = 10/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DLG+   +  A  + G+ KPTPIQ ++IPL LQ  D+ G+A+TG+GKT +F LP+L  
Sbjct: 67  FQDLGIVDSLCDACKELGWKKPTPIQQESIPLALQDRDIIGLAETGSGKTGAFALPILQA 126

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+K +        L+L PTRELAAQ+A +FE  G   +L  AL++GG+    Q   L +
Sbjct: 127 LLDKPQPLF----ALVLAPTRELAAQIAQSFEALGSLISLRCALILGGLDMVQQAIALGK 182

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR+LDH  + K   + N+  LV+DEADR+LDM F P +  I   +P  R+T
Sbjct: 183 KPHVVVATPGRLLDHLEKTKGFSLRNLRYLVMDEADRLLDMDFGPILDKILKFLPRERRT 242

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQLL 239
            LFSATM+ +++ +    L++P ++ +++    T  T+   +V  +  ++ K   L  L 
Sbjct: 243 FLFSATMSSKVESLQRACLRDPLKVSISSSKYQTVSTLVQNYV--FIPHTHKDTYLIYLC 300

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  IIF         +   L   G     +HG + Q +R+  L+ F+ G+  ++
Sbjct: 301 -NEFAGQTIIIFTRTVIETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSRDIL 359

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP+V  V N D+P  ++ Y+HR+GRT RAGR G A + V + D++    
Sbjct: 360 VATDVAARGLDIPNVDCVLNLDLPGDSKTYVHRVGRTARAGRSGHAISFVTQYDLELWLR 419

Query: 360 IEKLIEKKV 368
           IE  +  K+
Sbjct: 420 IEAALGTKL 428


>gi|259907666|ref|YP_002648022.1| ATP-dependent RNA helicase SrmB [Erwinia pyrifoliae Ep1/96]
 gi|224963288|emb|CAX54773.1| ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
 gi|283477516|emb|CAY73432.1| ATP-dependent RNA helicase [Erwinia pyrifoliae DSM 12163]
          Length = 442

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 133/353 (37%), Positives = 204/353 (57%), Gaps = 4/353 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ ++ + G+ +PT IQ + IP  L+  DV G A TGTGKTA+++LP L  
Sbjct: 6   FSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVAD   +  K+ +L +A + GG+ F    +    
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAFMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DV++ T GR+L +          +E L++DEADRMLDMGF   I+ I++   + +QTL
Sbjct: 126 NQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQTL 185

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  E ++  +E  L  P  IE +      + I+  +         K ALL  LL+
Sbjct: 186 LFSATLEGEAIKDFAERILNEPVEIEADPARRERKKIQQWYYRA-DDIKHKTALLLHLLK 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   ++F  +++ V  +C  L + G +   + G + Q  R + +    +G + ++V
Sbjct: 245 -QPEVTRAVVFVRKRERVHEVCGWLREAGINNSYLEGELVQAKRNEAIKRVVDGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           A+D+AARG+DI DV HV NFD+P  ++ Y+HRIGRTGRAG+ G A +LV   D
Sbjct: 304 ATDIAARGIDIDDVSHVINFDMPVTSDTYLHRIGRTGRAGKKGIAISLVEAHD 356


>gi|325274041|ref|ZP_08140194.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
 gi|324100824|gb|EGB98517.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
          Length = 504

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 121/319 (37%), Positives = 199/319 (62%), Gaps = 7/319 (2%)

Query: 51  KTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGG 109
           KTA+F LP+L  ++  +   R P+ LIL PTRELA QVA  FE Y K    + V  + GG
Sbjct: 1   KTAAFALPILNKIDVSK---REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGG 57

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
            P   Q + +  GA +++ TPGR+ DH  R + +++ ++ LV+DEAD ML +GF+  ++ 
Sbjct: 58  APMGPQLRAIRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEV 117

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I   +P TRQT+LFSAT+   ++ ++E  L+ PK +++ + + T   I+   +  +A   
Sbjct: 118 IFDAIPATRQTVLFSATLPSSIRSIAERHLREPKHVKIQSKTQTVTAIDQAHLMVHA--D 175

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           +K   + +LL+ ++     I F   K+  ++L  +LE +G+   A++G+I Q  R +++ 
Sbjct: 176 QKIPAVLRLLEVEE-FDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVID 234

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           + K+G + ++VA+D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV
Sbjct: 235 SLKDGRLDIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLV 294

Query: 350 AKEDIKHIDAIEKLIEKKV 368
              + + +  IE++  +KV
Sbjct: 295 TPRERRMLQVIERVTGQKV 313


>gi|255524857|ref|ZP_05391806.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|255511427|gb|EET87718.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
          Length = 375

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 212/368 (57%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LG+S  +V  + + G  +PTP+Q ++I L+    DV   +QTGTGKT +F+LP  
Sbjct: 1   MNFNQLGISEDIVKILKNNGITEPTPVQAESISLIKNGRDVIVESQTGTGKTLAFLLP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I E    +V   + LIL PTRELA Q+ +   K  +  ++ +    GG    +Q KKL+
Sbjct: 59  -IFENISTKVDAVQALILTPTRELALQITEEALKLKQAKDINILAAYGGKDIGSQLKKLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  ++I TPGR+LDH  R  + ++ ++  V+DEAD+ML MGF   ++ I       RQT
Sbjct: 118 TGIHLIIATPGRLLDHLERKTIDLSKLKTFVLDEADQMLLMGFKNDVETIIKETSKKRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+  ++++++  + + P  + +N    T + I+   V T     K+ AL   L  
Sbjct: 178 LCFSATINSDVKRLAYRYTKEPLAVTINKEEVTLDAIKQQVVET-TDRRKQDALCTVL-- 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +QD     IIFC  K+ V  L  SL K+G     +H +I Q  R +I+  F+ G  Q ++
Sbjct: 235 NQDNPYMAIIFCRTKRRVDELEVSLYKRGCDCKKLHSDILQSKRERIMKAFRNGDFQYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI  V H++N+D+P  AE+YIHRIGRTGRAG  G     +  +D   ++ I
Sbjct: 295 ATDVASRGLDISGVSHIYNYDIPESAESYIHRIGRTGRAGEEGYTCLFIDPKDRLRLEEI 354

Query: 361 EKLIEKKV 368
           EK I+ K+
Sbjct: 355 EKAIKFKI 362


>gi|238749573|ref|ZP_04611078.1| ATP-independent RNA helicase dbpA [Yersinia rohdei ATCC 43380]
 gi|238712228|gb|EEQ04441.1| ATP-independent RNA helicase dbpA [Yersinia rohdei ATCC 43380]
          Length = 504

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 139/373 (37%), Positives = 218/373 (58%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L  
Sbjct: 50  FSSLTLPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGVLDK 109

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           +  G     + + L+L PTRELA QV+    +  +   N+ +  L GG P   Q   L  
Sbjct: 110 IAVGEF---VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVH 166

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI +H  +  L++++++ILV+DEADRMLDMGF   I ++ S  P  RQTL
Sbjct: 167 APHIVVGTPGRIQEHLRKKTLILDDLKILVLDEADRMLDMGFADAIDDVISYTPPQRQTL 226

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S    + P  +EV+     A  IE  F  T  +  K+  LL  +L S
Sbjct: 227 LFSATYPQGIEQISARVQRQPVNVEVDD-GDEAPAIEQVFFETTRE--KRLPLLISVL-S 282

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ ++FCN KK+  N+  +LE +G SV A+HG+++QR R ++L  F   + +++VA
Sbjct: 283 HYQPESCVVFCNTKKDCQNVYEALESRGISVLALHGDLEQRDRDQVLVRFSNRSCRVLVA 342

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V NF++    E ++HRIGRTGRAG  G A +L   +++    AIE
Sbjct: 343 TDVAARGLDIKDLALVVNFELAFDPEIHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHAIE 402

Query: 362 KLIEKKVDWLNGD 374
             ++ K+ W   D
Sbjct: 403 DYLQMKLKWTPAD 415


>gi|149276646|ref|ZP_01882789.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
 gi|149232315|gb|EDM37691.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
          Length = 376

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 134/377 (35%), Positives = 225/377 (59%), Gaps = 7/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL+P ++ A+ D  + +PT IQ   IP +L + DV GIA+TG+GKTA +VLP+L
Sbjct: 1   MPFSSLGLTPALLIALADQQFNEPTAIQQTVIPAILAKKDVLGIAKTGSGKTAGYVLPVL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNK 117
           T L++    + R    L+L PTRELA QV + F+ +  +    V  L   GG+    Q  
Sbjct: 61  TNLQQSLGPKNRHANVLVLVPTRELAEQVKEVFKTFSTSLPEAVKTLAVYGGVSINTQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G +VL+ TPGR+L+      + ++++E L++DEAD+ML++GF   +  I +L+P  
Sbjct: 121 ALQ-GVNVLVGTPGRLLELVAANSVNLSSVETLILDEADKMLNLGFKEEVNKIIALLPAK 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ +LFSAT++ +++ + +  L +P  +++     + E I     A      KK   L+ 
Sbjct: 180 RQNVLFSATLSKDIEHIHQLLLHDPVVVKIEEGEDSLELITQT--AYIVSEDKKGPFLRS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++ +  MK  ++F +    V  + + L+K      A H    Q +R   L++FK G I+
Sbjct: 238 LIK-KHRMKQVLVFASSIHQVEAIVNKLQKNKIDAKAFHSKKSQGNRTDSLAHFKFGRIK 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+DL ARG+DI  + +V N+++P   ++Y+HRIGRTGRAG  G+A +LV+  ++ H 
Sbjct: 297 VLVATDLMARGIDIDGLPYVINYELPRSPKDYVHRIGRTGRAGNTGEAISLVSHNELHHF 356

Query: 358 DAIEKLIEKKVDWLNGD 374
           + I+K + K+V  ++ +
Sbjct: 357 EVIQKKMGKQVPLIDSE 373


>gi|67517117|ref|XP_658442.1| hypothetical protein AN0838.2 [Aspergillus nidulans FGSC A4]
 gi|40746512|gb|EAA65668.1| hypothetical protein AN0838.2 [Aspergillus nidulans FGSC A4]
          Length = 1676

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 141/362 (38%), Positives = 204/362 (56%), Gaps = 3/362 (0%)

Query: 3    FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
            F +  LS  ++  +    +  PTPIQ KTIP+ L   D+ G A TG+GKTA+FV+P+L  
Sbjct: 792  FQEFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILER 851

Query: 63   LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++ 
Sbjct: 852  LLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKKR 911

Query: 123  ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 912  PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTM 971

Query: 182  LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
            LFSATMTD + K+    L  P R+ V+T  +TA T+   FV     +  K+   L  L +
Sbjct: 972  LFSATMTDSVDKLIRVGLNRPVRLMVDTKKNTAVTLVQEFVRLRPGREDKRLGYLLHLCK 1031

Query: 241  SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               T +  I+F  QKK    +       G     +HG++ Q  R+K + +F++G +  ++
Sbjct: 1032 EVYTGRV-IVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFRDGNVNFLL 1090

Query: 301  ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + A 
Sbjct: 1091 ATDLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDRKVVKAA 1150

Query: 361  EK 362
             K
Sbjct: 1151 VK 1152


>gi|149927779|ref|ZP_01916031.1| putative ATP-dependent RNA helicase [Limnobacter sp. MED105]
 gi|149823605|gb|EDM82835.1| putative ATP-dependent RNA helicase [Limnobacter sp. MED105]
          Length = 617

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 141/375 (37%), Positives = 218/375 (58%), Gaps = 12/375 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           M F D+GL+  ++ A+       PT +Q + +PL     D+   +QTG+GKT  F+LP  
Sbjct: 1   MSFDDMGLAAPLLQALNALNITAPTLVQQEVVPLGKDGGDLMVSSQTGSGKTFGFLLPVM 60

Query: 59  --MLTILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFE 113
             M+T  +     +  P  L+L PTRELA QV+    N  K+ K   + VA ++GG+P+ 
Sbjct: 61  HRMMTGEQSPMEMLAGPECLVLCPTRELAQQVSQDAINLVKFTKG--VRVATVVGGMPYG 118

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L RGA +++ TPGR+LD   +GKL ++ +  L++DEADRMLD+GF   ++ I  L
Sbjct: 119 KQMASL-RGARIVVGTPGRLLDLAQQGKLNLSTVTTLIVDEADRMLDLGFSEDLEAIDQL 177

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
                QTL+FSAT    +  ++EN + NPKRIE+   +     I    +    +  K+  
Sbjct: 178 CGNRIQTLMFSATFAKRIIGLAENIMNNPKRIEMAAQNEANTDIAQKLMWADNRGHKR-K 236

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL   L+  D M   ++F + + +  NL   L  +G   CA+HG + Q  R + L++ ++
Sbjct: 237 LLNHWLEHPD-MVQAVVFTSTQIDAENLARDLADEGVRACALHGGMPQVVRNRRLASVRK 295

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I+++VA+D+AARGLD+P + HV N+ +P ++E+Y+HRIGRTGRAGR G A TL    D
Sbjct: 296 GDIKVLVATDVAARGLDVPAISHVINYGMPMKSEDYVHRIGRTGRAGRSGVAVTLAEACD 355

Query: 354 IKHIDAIEKLIEKKV 368
           I  +  IE+ I  ++
Sbjct: 356 IISVRGIERFINSRI 370


>gi|257455420|ref|ZP_05620655.1| ATP-dependent RNA helicase RhlB [Enhydrobacter aerosaccus SK60]
 gi|257447382|gb|EEV22390.1| ATP-dependent RNA helicase RhlB [Enhydrobacter aerosaccus SK60]
          Length = 391

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 142/384 (36%), Positives = 224/384 (58%), Gaps = 18/384 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P +  A+   GY   TPIQ + +P  L   D  G AQTGTGKTA+F+L ++  
Sbjct: 5   FSQLPLHPALKQAIDQLGYQTLTPIQAQILPNTLAGQDAIGQAQTGTGKTATFLLTIINE 64

Query: 63  LEK--------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           L          G   +   R L+L PTRELA Q+  +  +  K   L    L+GG  +E 
Sbjct: 65  LLNNPLNPEIDGDRFLGETRALVLAPTRELAQQIYQDCLELTKFTELHTVCLLGGTDYET 124

Query: 115 QNKKL-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           Q+K+L ++  D++I TPGR++D   +  + ++ +EILV+DEADRMLDMGFIP I+ +  +
Sbjct: 125 QSKQLHQKFVDIIIATPGRLIDFCFQHHVYLDRLEILVLDEADRMLDMGFIPDIKRLIRM 184

Query: 174 VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +P    RQTLLFSAT   ++  ++  +L  P  +E+     T++TIE  F       S K
Sbjct: 185 MPANTHRQTLLFSATFNQDVMNLAYRWLYQPIFVEIAPEQKTSQTIEQLFFTLME--SDK 242

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
            A LQQ+++ + + K  I+F N+K  V  L   L +Q + V  + G++ Q  R K L+ F
Sbjct: 243 LAALQQIIE-KISPKKMIVFANRKDQVKRLYDKLNRQ-YKVVILSGDVIQAKREKYLAQF 300

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           ++G   ++VA+D+A RG+ + DV  V N+ +P+  ++Y+HRIGRTGRAG  G + + +++
Sbjct: 301 RQGDANILVATDVAGRGIHVDDVACVVNYTLPDSPDDYVHRIGRTGRAGNKGMSISFISE 360

Query: 352 EDIKHIDAIEKLIEKKV---DWLN 372
            D  ++ AIE+ +++ +    W N
Sbjct: 361 NDGFNLPAIEQYLDESIKMQQWSN 384


>gi|213402583|ref|XP_002172064.1| ATP-dependent RNA helicase dbp10 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000111|gb|EEB05771.1| ATP-dependent RNA helicase dbp10 [Schizosaccharomyces japonicus
           yFS275]
          Length = 854

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 138/391 (35%), Positives = 219/391 (56%), Gaps = 36/391 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  +GLS  ++ A+   G+  PTPIQ KTIP VL   DV G+A+TG+GKTA+FV+PM+ 
Sbjct: 66  NFQSMGLSTTMLRAITKKGFKAPTPIQRKTIPFVLDGRDVVGMARTGSGKTAAFVIPMIE 125

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+  RA+    R +IL P+RELA Q     + + K+ NL  A+++GG   E Q   L  
Sbjct: 126 KLKASRAQ-SGSRAIILSPSRELALQTMKVVKDFSKDTNLRTAVIVGGEGLEEQFSILTN 184

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR L      KL + +IE +V DEADR+ +MGF   +  I   +P +RQTL
Sbjct: 185 KPDIIVATPGRFLHLKVEMKLELGSIEYVVFDEADRLFEMGFAAQLTEILHGLPSSRQTL 244

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL- 238
           LFSAT+   L + ++  LQ P  + ++  S  +  ++  F  V T  + +    +LQ++ 
Sbjct: 245 LFSATLPKNLVEFAKAGLQEPILVRLDVESKVSSDLQSAFFSVKTAEREAALLYVLQEVI 304

Query: 239 -LQSQDTMK-------------------------------NGIIFCNQKKNVVNLCHSLE 266
            L+ Q+ +K                               + I+F   K +V  +   L+
Sbjct: 305 HLRLQEELKPAELPSQAENPKKRKRLLEHTLKKPETAASDSTIVFVPTKHHVEYITEMLK 364

Query: 267 KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
           + G+ V  I+G++DQ +R   ++NF+ G   ++V +D+AARG+DIP + +V N+D P + 
Sbjct: 365 QAGYGVSRIYGSLDQTARKNEITNFRLGVSNVLVVTDVAARGIDIPLLSNVVNYDFPAQP 424

Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           + ++HR+GRT RAGR G A+T V  ED  ++
Sbjct: 425 KIFVHRVGRTARAGRTGWAYTFVRAEDAGYL 455


>gi|288799847|ref|ZP_06405306.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288333095|gb|EFC71574.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 445

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 147/405 (36%), Positives = 231/405 (57%), Gaps = 20/405 (4%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84
           TPIQ   IP +L + D+ G+AQTGTGKTA+++LP+L++L+ G         +I+ PTREL
Sbjct: 7   TPIQEACIPAILNKKDILGVAQTGTGKTAAYLLPVLSLLDNGGYPKDKINCIIMSPTREL 66

Query: 85  AAQVADNFEKYGKNYNL----TVALLIG--GIPFEAQNKKLERGADVLICTPGRILDHFN 138
           A Q+    +  G +Y L    +VA+  G  G  ++ + K L+ GADV+I TPGR + H +
Sbjct: 67  AQQIDQAMQ--GFSYYLQEVSSVAVYGGNDGNRYDQEIKSLKLGADVIIATPGRFISHLS 124

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
            G +  + +   ++DEADRMLDMGF   I  I   +P   Q ++FSATM  +++ ++   
Sbjct: 125 LGNIDTSGVSFFILDEADRMLDMGFYDDIMTIAKELPPHCQNIMFSATMPPKIETLARTI 184

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           L+NP+ I++   S  AE I+      Y    +K  ++  L  + D ++  IIF  +K  V
Sbjct: 185 LKNPETIKLAV-SKPAEKIKQSAYVCYE--PQKLKIVTSLFNA-DNLQRVIIFSGKKDKV 240

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            ++  +L  +  +  A+H ++ Q  R +++  FK G I ++VA+D+ +RG+DI D+  V 
Sbjct: 241 KDINKALLSKKINSGAMHSDLSQAERDEVMFKFKAGQIDVLVATDIVSRGIDIDDIRMVI 300

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL-NGDLSS 377
           N+DVP+  E+YIHRIGRT RA R GKA TLV+ ED+ +   IE+ +EK +D   N D   
Sbjct: 301 NYDVPHDVEDYIHRIGRTARADRDGKAITLVSDEDMFYFQQIEQFLEKTIDKTPNPDNIG 360

Query: 378 LNPPLEKIDIAQHNHARKNNPIPQKSTG---FDRRKKNYSSQKSH 419
             P  +K+       ARK     + S+G   F +R    +  + H
Sbjct: 361 EGPEYKKV----QKFARKKGVKSRNSSGKASFKQRHYKETKNQQH 401


>gi|167035034|ref|YP_001670265.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida GB-1]
 gi|166861522|gb|ABY99929.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 453

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 138/372 (37%), Positives = 216/372 (58%), Gaps = 11/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F+   L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 15  FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 74

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L+ GR  +R   +LIL PTRELA Q     + + +   +   L+ GG  F+ Q   L
Sbjct: 75  LVDLKGGRVEIR---SLILLPTRELAQQTLKQVQLFSQFTYVKAGLVTGGEDFKEQAAML 131

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  DVLI TPGR+L+  N G L ++++++L++DEADRMLDMGF   ++ +        Q
Sbjct: 132 RKVPDVLIGTPGRLLEQLNAGNLDLSHVKVLILDEADRMLDMGFAEDMERLCKECENREQ 191

Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAE-TIEHCFVATYAQYSKKCALLQQ 237
           TLLFSAT     L+ +    L++P+ + +N+ S  AE T +    A + Q+ ++ A   Q
Sbjct: 192 TLLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIA---Q 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L + +T    IIF N +     +   L  +      +HG  DQ+ R   +  FK+G+ +
Sbjct: 249 WLLANETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSK 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  +  V NFD+P   + Y+HR+GRTGRAG  G A +L+   D   +
Sbjct: 309 VLVATDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLM 368

Query: 358 DAIEKLIEKKVD 369
            +IE+ ++++ +
Sbjct: 369 SSIERYLKQQFE 380


>gi|160897857|ref|YP_001563439.1| DEAD/DEAH box helicase domain-containing protein [Delftia
           acidovorans SPH-1]
 gi|160363441|gb|ABX35054.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
          Length = 438

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 139/382 (36%), Positives = 210/382 (54%), Gaps = 22/382 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+FA LGLSP +V ++ D G V PTPIQ ++I  VL   D+   A TG+GKTA+++LP+L
Sbjct: 1   MNFASLGLSPALVSSLQDLGLVDPTPIQTQSIAPVLAGRDLWACAPTGSGKTAAYLLPLL 60

Query: 61  -------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT--VALLIGGIP 111
                           VR   TLI+ PTRELA QV +     G+       + ++ GG+ 
Sbjct: 61  QRWMDGGKAQGAQGGFVRTLTTLIVVPTRELAQQVGETLSDLGRALKQPPRIGVVYGGVS 120

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q   L   AD L+ TPGR+LD      + ++ +  LV+DEADR+LD+GF   +Q + 
Sbjct: 121 INPQMMMLRGSADFLVATPGRLLDLVEHNAVRLSAVRHLVLDEADRLLDLGFQDELQRVL 180

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP----SSTAETIEHCFVATYAQ 227
           +L+P  RQTLLFSAT  D +Q ++   L +P +  V+      +++ ++I    +A    
Sbjct: 181 ALLPKQRQTLLFSATYPDAVQSLATGLLHDPVQARVDAAEGQDAASPQSITQRAIAV--D 238

Query: 228 YSKKCALLQQLLQSQD-------TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
            +++  LL+QL+Q          T++  ++F   +     +   L K G    A HG++ 
Sbjct: 239 RARRTQLLRQLVQGDTAAGTDPVTLERALVFVATRHTAELVAEKLYKAGIFATAFHGDLS 298

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q +R + L++FK    Q+M+ +DLAARG+DI  +  V N+D+P  A +Y+HRIGRTGRAG
Sbjct: 299 QGARKEALADFKAKRWQVMITTDLAARGIDITQLPLVVNYDLPRSATDYVHRIGRTGRAG 358

Query: 341 RHGKAFTLVAKEDIKHIDAIEK 362
             G A + V   D  H   I K
Sbjct: 359 EDGTAISFVTPADQAHWALICK 380


>gi|319955577|ref|YP_004166844.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM
           14237]
 gi|319424237|gb|ADV51346.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM
           14237]
          Length = 449

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 210/370 (56%), Gaps = 4/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  ++  A+ D  +  PTPIQ     +V+   D+ GIAQTGTGKT +++LP+L  
Sbjct: 4   FEDFNLKKQLNYAIEDLKFSAPTPIQEAAFSVVMSGKDIVGIAQTGTGKTMAYMLPILQ- 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E   ++   PR L+L PTREL  QV +N E + K  N+ V  + GG     Q ++  +G
Sbjct: 63  -EITFSKQIHPRVLVLVPTRELVLQVVENIESFAKYINIRVLGVYGGTNINTQKQQCAQG 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+ D      + +  ++ LVIDE D MLD+GF   + N+  L+P  RQ ++
Sbjct: 122 TDILVATPGRLYDLALSKAVKLKEVKKLVIDEVDVMLDLGFRFQLINLFDLLPARRQNIM 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATMTD++  + ++F   P+++ +    +  + I+    A    Y+ K  LL +LL+ +
Sbjct: 182 FSATMTDDVDALIDDFFTAPEKVSIAVSGTPLDNIKQVCYAVPNFYT-KINLLIRLLKDK 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQ-GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           DT +  ++F + K+    +   +E   G   C IH N  Q  RM+ +  F EG  +++V 
Sbjct: 241 DTYQKVLVFVSNKRFADKVFEEMEVAFGNESCVIHSNKTQNYRMRSIRQFDEGKNRILVT 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  + HV NFD PN  ENY+HRIGR+GRA   G +     +++    +AIE
Sbjct: 301 TDVMARGLDLDKITHVINFDTPNYPENYMHRIGRSGRAEHQGNSVLFYTEKEEPLKEAIE 360

Query: 362 KLIEKKVDWL 371
            L++ ++  +
Sbjct: 361 ALMDYEIPLM 370


>gi|50547049|ref|XP_500994.1| YALI0B16896p [Yarrowia lipolytica]
 gi|74660102|sp|Q6CEB8|DRS1_YARLI RecName: Full=ATP-dependent RNA helicase DRS1
 gi|49646860|emb|CAG83247.1| YALI0B16896p [Yarrowia lipolytica]
          Length = 753

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 142/381 (37%), Positives = 216/381 (56%), Gaps = 13/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  V+  +   GY  PTPIQ +TIP+ L   D+   A TG+GKTA++++P+L  
Sbjct: 254 FQTLNLSRPVMKGISALGYQAPTPIQSRTIPIALMGKDLVAGAVTGSGKTAAYIIPVLER 313

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           L    ++V   + ++L PTREL+ QVAD  +K  +  + +   L +GG+    Q ++L+ 
Sbjct: 314 LLYKSSKVAATKVVVLTPTRELSIQVADVGKKLAQYVSGVRFGLAVGGLNLRVQEQELKT 373

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             +V+I TPGR +DH  N     ++++EILVIDEADRML+ GF   +  I +L+P  RQT
Sbjct: 374 RPEVVIATPGRFIDHVRNSPSFNVDDVEILVIDEADRMLEEGFQQELTEILTLLPKKRQT 433

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +  + +  L  P R+ +N P   A  +   FV    +   K ALL  +L+
Sbjct: 434 LLFSATMNSSISSLIQLSLSRPVRVMINPPKQAASGLVQEFVRIRKRDHLKPALLASILK 493

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  IIF  +K+    L   L   G  +  +HG + Q  R++ ++ FK+  + ++V
Sbjct: 494 KMDKEQRTIIFVARKETAHRLRIMLGLLGVRIGELHGALSQEQRLQSITAFKKLEVPILV 553

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA---------K 351
            +DLA+RGLDIP +  V N+D+P     Y+HR+GRT RAGR G++ TLV          +
Sbjct: 554 CTDLASRGLDIPKIECVVNYDMPQTHAVYLHRVGRTARAGREGRSITLVGEAAADRAIVR 613

Query: 352 EDIKHIDAIE--KLIEKKVDW 370
           E IK +   +  K + + VDW
Sbjct: 614 EAIKSVSESKQGKAVGRNVDW 634


>gi|294626035|ref|ZP_06704645.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599705|gb|EFF43832.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 458

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 145/381 (38%), Positives = 213/381 (55%), Gaps = 9/381 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ L LSP +   +   GY   TPIQ +++P +LQ  DV   A TG+GKTA+F L +L 
Sbjct: 3   EFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+    R +    L+L PTRELA QV     +      N+ + +L GG+P   Q   LE
Sbjct: 63  KLDPALTRAQ---ALVLCPTRELADQVGKQLRRLATGIPNMKLVVLTGGMPLGPQLASLE 119

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I S     RQ
Sbjct: 120 AHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT  D ++ ++   L+ P  I V    S  E I+  F      Y +K A+   LL
Sbjct: 180 SLLFSATFPDSIRALARELLKEPVEITVEGADSAPE-IDQQFFEVDPTYRQK-AVAGLLL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +     ++ ++FCN +K V  +  SL++ GFS  A+HG+++QR R ++L  F   +  ++
Sbjct: 238 RFNP--ESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+HG A +LVA  +     A
Sbjct: 296 VASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETTRAQA 355

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           +E    + + W    L++  P
Sbjct: 356 LETEQGQPLKWSRAPLATARP 376


>gi|225011120|ref|ZP_03701583.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-3C]
 gi|225004754|gb|EEG42713.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-3C]
          Length = 455

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 142/367 (38%), Positives = 209/367 (56%), Gaps = 4/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L+  +   + + GY  PTPIQ  T   VL   DV G+AQTGTGKT +++LP+L  
Sbjct: 9   FEEFNLNTPLKNNLSEVGYEVPTPIQGATYASVLSGQDVLGLAQTGTGKTLAYLLPILND 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+ +  R L++ PTREL +QV +  EK  +N  + V  + GG   +     L + 
Sbjct: 69  LK--FAKEKTVRALVIVPTRELVSQVVEEAEKICQNTFIRVCGVHGGNSMKKDRDALAQS 126

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           AD+++ TPGR+ D F    +    I+ +VIDE D MLD+GF   + NI  L+P  RQ ++
Sbjct: 127 ADIIVATPGRLYDLFLARVIKYAAIKKVVIDEVDVMLDLGFRFQLTNIFDLLPKKRQHIM 186

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATMTDE++ +  +F   PKRI +    +  + I     A    Y  K  LLQ LL+ +
Sbjct: 187 FSATMTDEIESLISDFFIAPKRIYIAMSGTPLKNIAQTAYAV-PNYYTKVNLLQHLLEQE 245

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQ-GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +T K  ++F + KK    +   LE     ++  +H N  Q  R ++LS F  G I++++A
Sbjct: 246 ETFKKVLVFVSNKKIADRIYEQLEPVFEKNIGIVHANKTQNHRNRVLSAFDAGRIRIVIA 305

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARGLDI  + HV NFD P   ENY+HRIGRTGRA   G +  L   E++ + +AIE
Sbjct: 306 TDLVARGLDIDQISHVINFDTPKYPENYMHRIGRTGRANADGNSILLHNPEELAYKEAIE 365

Query: 362 KLIEKKV 368
            L++  V
Sbjct: 366 TLMQIAV 372


>gi|154298956|ref|XP_001549899.1| p68 RNA helicase [Botryotinia fuckeliana B05.10]
 gi|150857630|gb|EDN32822.1| p68 RNA helicase [Botryotinia fuckeliana B05.10]
          Length = 473

 Score =  245 bits (626), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 208/373 (55%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+  PTPIQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 63  FDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 122

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 123 INAQPLLAPGDG----PIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGGQI 178

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L +G +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 179 RDLAKGVEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQIRP 238

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT ++SAT   E++ ++ ++L    ++ + +   +A       V   +++ K+  + +
Sbjct: 239 DRQTCMWSATWPKEVRALASDYLNEFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTK 298

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L +  +   N I IF   K+   ++   L + G+   +IHG+  Q  R  +L+ FK G 
Sbjct: 299 HLEKIMEDKDNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 358

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+A+RG+D+ ++ HVFN+D PN +E+YIHRIGRTGRAG+ G A TL   ++ K
Sbjct: 359 SPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITLFTTDNQK 418

Query: 356 HI-DAIEKLIEKK 367
              D +  L E K
Sbjct: 419 QARDLVNVLTEAK 431


>gi|255013264|ref|ZP_05285390.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_7]
          Length = 426

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 140/378 (37%), Positives = 219/378 (57%), Gaps = 19/378 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   V+  + D  + + TP+Q  TIP++L+  D+   AQTGTGKTA++VLP++
Sbjct: 1   MRFDELDLEDAVLDGLYDMNFDETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL----TVALLIG--GIPFEA 114
             L KG         +I+ PTRELA Q+    +  G  Y +     VA+  G  GI +E 
Sbjct: 61  NELSKGCHPTDAVNAVIMAPTRELAQQIDQQIQ--GFTYFIPSVSAVAVYGGTDGIAWEQ 118

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LE GAD++I TPGR+L H   G + ++ +   V+DEADRMLDMGF   I  +   +
Sbjct: 119 QKRGLEMGADIVIATPGRLLSHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQL 178

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKK 231
           P   QT++FSATM  +++ +++  L++P+ +++     P S  +T   C+        +K
Sbjct: 179 PPYCQTIMFSATMPPKIRTLAKTILKDPEEVKIAISRPPESIMQTAYICY------DPQK 232

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             +LQ L  +Q   +  IIF + K  V  L  +L++  F+V A+H +++Q  R +++  F
Sbjct: 233 LKILQDLF-TQSRPQRVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEF 291

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVA 350
           K G I ++VA+D+ ARG+DI D+  V NFD+P+  E+Y+HRIGRT R     G A T V+
Sbjct: 292 KSGHIDILVATDVVARGIDINDIKLVVNFDIPHDPEDYVHRIGRTARGTNGEGLAITFVS 351

Query: 351 KEDIKHIDAIEKLIEKKV 368
            ++      IE  +EK+V
Sbjct: 352 IDEQAQFKRIEDFLEKEV 369


>gi|195399942|ref|XP_002058578.1| GJ14499 [Drosophila virilis]
 gi|194142138|gb|EDW58546.1| GJ14499 [Drosophila virilis]
          Length = 733

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 143/389 (36%), Positives = 212/389 (54%), Gaps = 12/389 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA+  L   VV  +   GY  PTPIQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 283 DFAEAYLPDYVVKEIRRQGYKSPTPIQAQGWPIAMSGANFVGIAKTGSGKTLGYILPAIV 342

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +  ++   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 343 HINNQQPLQRGEGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 402

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 403 QRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 462

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+++++E+FL N  +I + +   +A       V    ++SK+  L   L 
Sbjct: 463 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEDKLKSLLS 522

Query: 240 QSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
              DT +N    IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G  
Sbjct: 523 DIYDTSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 582

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + K 
Sbjct: 583 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 642

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
             A+       VD L      +NP LE +
Sbjct: 643 AKAL-------VDVLREANQEINPALENL 664


>gi|195118551|ref|XP_002003800.1| GI21075 [Drosophila mojavensis]
 gi|193914375|gb|EDW13242.1| GI21075 [Drosophila mojavensis]
          Length = 515

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 132/367 (35%), Positives = 216/367 (58%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + DLGL+  +  A  +  +  P+ IQ + IP+ LQ  D+ G+A+TG+GKT +F LP+L  
Sbjct: 61  WKDLGLNETLCKACEELKWKAPSKIQKEAIPVALQGKDIIGLAETGSGKTGAFALPILHA 120

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +   R      L+L PTRELA Q+ + FE  G    +   +++GG+   AQ  +L + 
Sbjct: 121 LLENPQRYF---ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKK 177

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             ++I TPGR++DH  N     +  I+ LV+DEADR+L+M F   +  I  ++P  R+T 
Sbjct: 178 PHIIIATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTF 237

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT +++K+    L++P ++EV+    T + ++  ++    +Y  K   L  +L +
Sbjct: 238 LFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYIFIPVKY--KDVYLVHIL-N 294

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK     ++++
Sbjct: 295 ELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILIS 354

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR G+A T+V + DI+    IE
Sbjct: 355 TDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITMVTQYDIELYQRIE 414

Query: 362 KLIEKKV 368
           +L+ K++
Sbjct: 415 QLLGKQL 421


>gi|134034065|sp|A2QC74|DBP2_ASPNC RecName: Full=ATP-dependent RNA helicase dbp2
 gi|134056301|emb|CAK37534.1| unnamed protein product [Aspergillus niger]
          Length = 565

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 134/373 (35%), Positives = 208/373 (55%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ +PT IQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 139 FDEAGFPQYVLSEVKAQGFDRPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 198

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 199 INAQPLLAPGDG----PIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQI 254

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 255 RDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 314

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT ++SAT   E+++++ +FL +  ++ + +   +A       V   + + K+  +++
Sbjct: 315 DRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 374

Query: 237 QLLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L +  +   N  +IF   K+    +   L + G+   +IHG+  Q+ R  +L+ FK G 
Sbjct: 375 HLEKIMENRANKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGK 434

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A T    ++ K
Sbjct: 435 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSK 494

Query: 356 HI-DAIEKLIEKK 367
              D +  L E K
Sbjct: 495 QARDLVTILTEAK 507


>gi|218689333|ref|YP_002397545.1| ATP-dependent RNA helicase DbpA [Escherichia coli ED1a]
 gi|218426897|emb|CAR07752.2| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           ED1a]
          Length = 457

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 140/377 (37%), Positives = 219/377 (58%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+N+ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEINS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+  ++C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W     +S   PLE
Sbjct: 363 KLNWQTLPANSSIVPLE 379


>gi|328752857|gb|EGF66473.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
          Length = 564

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 145/398 (36%), Positives = 225/398 (56%), Gaps = 24/398 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L  
Sbjct: 55  FANLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 114

Query: 63  L----EKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    ++G   +     P+ L++ PTRELA QV+ +           V  + GG+ +E+Q
Sbjct: 115 ITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQ 174

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G DV++ TPGR+LD   R  L ++++ I+V+DEAD MLD+GF+P ++N+    P
Sbjct: 175 IDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTP 234

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYAQYSKKC 232
            +RQT+LFSATM   +  ++ + L+ P  +     +T ++  +T +  +    A    K 
Sbjct: 235 ASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY---QAHPLDKI 291

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            ++ ++LQ+ D  K  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+
Sbjct: 292 EIIGRILQANDVEKV-IIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFR 350

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   
Sbjct: 351 HGEATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWA 410

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           D+       KLI K    LN +LS    P+E    + H
Sbjct: 411 DVTRW----KLINKA---LNLELSE---PVETYSTSPH 438


>gi|325183171|emb|CCA17628.1| putative RNA helicase [Albugo laibachii Nc14]
          Length = 1157

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 139/382 (36%), Positives = 211/382 (55%), Gaps = 11/382 (2%)

Query: 3    FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
            F +      V+  V+  G+ KPTPIQ +  P+ L   D+ GI+ TG+GKT +F+LP +  
Sbjct: 755  FEEASFPAYVLEEVMRLGFQKPTPIQCQGWPMALSGRDMVGISATGSGKTLAFLLPAIVH 814

Query: 63   ------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                  LE G      P  LI+ PTRELA Q+     K+G +  +    + GG+P   Q 
Sbjct: 815  INAQPHLEPGDG----PIVLIIAPTRELAVQIQQEANKFGASSKIKNTCVYGGVPKYNQI 870

Query: 117  KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             +L +G ++ ICTPGR++D  ++GK  +  +  LV+DEADRMLDMGF P ++ I S +  
Sbjct: 871  MELRQGVEICICTPGRMIDLLSQGKTNLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRP 930

Query: 177  TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             RQTL++SAT   E+  ++ +FL +  ++ V +   TA       V     + K  AL+ 
Sbjct: 931  DRQTLMWSATWPKEIVSLAHDFLTDYIQVTVGSLELTANKKIEQIVEVMDDHQKYNALVA 990

Query: 237  QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L    D  +  I+FC  K+    L  +L    +   AIHGN  Q  R  +L +FK+G  
Sbjct: 991  HLRVIYDGGRI-ILFCETKRGADELSRNLRNSRYICKAIHGNKSQEERDYVLKDFKQGKT 1049

Query: 297  QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            Q++VA+D+A+RGLDI D+ +V NFD+P   E+YIHRIGRT RAG  G A +    ++ + 
Sbjct: 1050 QILVATDVASRGLDIKDIRYVINFDMPKNVEDYIHRIGRTARAGSKGTAISFFTSDNGRL 1109

Query: 357  IDAIEKLIEKKVDWLNGDLSSL 378
               + +++E+    +   L SL
Sbjct: 1110 ASPLIRVLEEANQQVPAALRSL 1131


>gi|291244816|ref|XP_002742290.1| PREDICTED: Vasa-like, partial [Saccoglossus kowalevskii]
          Length = 679

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 137/346 (39%), Positives = 207/346 (59%), Gaps = 13/346 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR------AR 69
           V  A Y+KPTP+Q  +IP++L+  D+   AQTG+GKTA+F+LP+LT + K        + 
Sbjct: 315 VAKAKYLKPTPVQKYSIPIILRGRDLMSCAQTGSGKTAAFLLPVLTGMIKSGLSGSSFSE 374

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P+ L++ PTRELA Q+     K+  +  L   +  GG   + Q ++L RG ++L+ T
Sbjct: 375 AVEPQALVITPTRELALQIHHEALKFAYSTILRPVVCYGGTSVQHQLRELSRGCNLLVAT 434

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--VPFT--RQTLLFSA 185
           PGR+LD   +GK+ +  ++ L++DEADRMLDMGF P I+ + +   +P    RQTL+FSA
Sbjct: 435 PGRLLDFVGKGKVGLGKLKYLILDEADRMLDMGFEPEIRRLVASPNMPSKEDRQTLMFSA 494

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL---QSQ 242
           T  +E+QK++ +FL +   + V     T   IE   V   +Q+ KK  L++ L+    S 
Sbjct: 495 TFPEEIQKLAGDFLNDYIFLTVGRVGGTTPDIEQSVVQMESQFQKKEKLMEILIDVISSF 554

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  ++F   K++   +   L + GF   +IHG+  QR R + LS FK G   ++VA+
Sbjct: 555 PGTEKVVVFVETKRSADFVASYLSQSGFPTTSIHGDRLQREREEALSCFKRGETPVLVAT 614

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +AARGLDIP V HV NFD+P+  + Y+HRIGRTGR G  GKA + 
Sbjct: 615 SVAARGLDIPGVKHVVNFDLPDNIDEYVHRIGRTGRVGNIGKAVSF 660


>gi|311281534|ref|YP_003943765.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308750729|gb|ADO50481.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
          Length = 421

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 143/373 (38%), Positives = 210/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P V+ A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPTVIEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E       L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAMENRQVNQPRALIMAPTRELAVQIHADAEPLASASGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LENGVDILIGTTGRLIDYARQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNDEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q LL+ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLLE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSVSLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|16130501|ref|NP_417071.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89109382|ref|AP_003162.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           W3110]
 gi|170082185|ref|YP_001731505.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238901741|ref|YP_002927537.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|134878|sp|P21507|SRMB_ECOLI RecName: Full=ATP-dependent RNA helicase srmB
 gi|42996|emb|CAA32364.1| SrmB protein [Escherichia coli]
 gi|285777|dbj|BAA02447.1| putative ATP dependent RNA helicase [Escherichia coli]
 gi|987650|dbj|BAA10922.1| putative ATP dependent RNA helicase [Escherichia coli K-12]
 gi|1788930|gb|AAC75629.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|85675467|dbj|BAE76752.1| ATP-dependent RNA helicase [Escherichia coli str. K12 substr.
           W3110]
 gi|169890020|gb|ACB03727.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238860047|gb|ACR62045.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|260448344|gb|ACX38766.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
 gi|315137200|dbj|BAJ44359.1| ATP-dependent RNA helicase SrmB [Escherichia coli DH1]
          Length = 444

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 137/356 (38%), Positives = 206/356 (57%), Gaps = 4/356 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73
           A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  +L+  R +   P
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R LIL PTRELA QV+D+  +  K+ +L +A + GG+ +    +      D+++ T GR+
Sbjct: 78  RILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQ 192
           L +          +E L++DEADRMLDMGF   I++I     + +QTLLFSAT+  D +Q
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
             +E  L++P  +  N PS+      H +         K ALL  LL+  +  ++ I+F 
Sbjct: 198 DFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFV 255

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
            +++ V  L + L + G + C + G + Q  R + +    EG + ++VA+D+AARG+DIP
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           DV HVFNFD+P   + Y+HRIGRT RAGR G A +LV   D   +  + + IE+ +
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371


>gi|256272311|gb|EEU07295.1| Drs1p [Saccharomyces cerevisiae JAY291]
          Length = 751

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 145/403 (35%), Positives = 225/403 (55%), Gaps = 20/403 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L LS  V+  +   GYVKP+PIQ  TIP+ L   D+   A TG+GKTA+F++P++ 
Sbjct: 231 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 290

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L    A++   R ++L PTRELA QVAD  ++  +  + +T  L +GG+    Q + L+
Sbjct: 291 RLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLK 350

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D++I TPGR +DH  N     ++++EILV+DEADRML+ GF   +  I  L+P  RQ
Sbjct: 351 SRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQ 410

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  +++ +    L+ P RI ++ P   A  +   FV    +   K ALL  L+
Sbjct: 411 NLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLI 470

Query: 240 QSQD--TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  D    K  ++F  +K+    L   +   G SV  +HG++ Q  R+  ++ FK   + 
Sbjct: 471 RKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVP 530

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---- 353
           +++ +DLA+RGLDIP +  V N+D+P   E Y+HR+GRT RAGR G++ T V +      
Sbjct: 531 VLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 590

Query: 354 -----IKHIDAIEKLIEKK-----VDWLNGDLSSLNPPLEKID 386
                IK ++  + L + K     VDW+   +   N  +E +D
Sbjct: 591 IVRAAIKSVEENKSLTQGKALGRNVDWVQ--IEETNKLVESMD 631


>gi|218690692|ref|YP_002398904.1| ATP-dependent RNA helicase SrmB [Escherichia coli ED1a]
 gi|218428256|emb|CAR09175.2| ATP-dependent RNA helicase [Escherichia coli ED1a]
          Length = 444

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 137/353 (38%), Positives = 204/353 (57%), Gaps = 4/353 (1%)

Query: 18  DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTL 76
           D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  +L+  R +   PR L
Sbjct: 21  DKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRIL 80

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           IL PTRELA QVAD+  +  K+ +L +A + GG+ +    +      D+++ T GR+L +
Sbjct: 81  ILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQY 140

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQKVS 195
                     +E L++DEADRMLDMGF   I++I     + +QTLLFSAT+  D +Q  +
Sbjct: 141 IKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFA 200

Query: 196 ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
           E  L++P  +  N PS+      H +         K ALL  LL+  +  ++ I+F  ++
Sbjct: 201 ERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFVRKR 258

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           + V  L + L + G + C + G + Q  R + +    EG + ++VA+D+AARG+DIPDV 
Sbjct: 259 ERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVS 318

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           HVFNFD+P   + Y+HRIGRT RAGR G A +LV   D   +  + + IE+ +
Sbjct: 319 HVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371


>gi|145300612|ref|YP_001143453.1| ATP-dependent RNA helicase DbpA [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853384|gb|ABO91705.1| ATP-dependent RNA helicase DbpA [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 459

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 154/460 (33%), Positives = 246/460 (53%), Gaps = 25/460 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ L LSP +   +   GY++ TPIQ +++PLVL   D+   A+TG+GKTA+F L +L 
Sbjct: 5   EFSSLNLSPALQENLTSLGYLQMTPIQAQSLPLVLDGKDLIAKAKTGSGKTAAFALGLLA 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L   R  V+    L+L PTRELA QVA    +  +   N+ +  L GG     Q+  L 
Sbjct: 65  KLNVNRLEVQ---ALVLCPTRELADQVAQEIRRLARALPNVKLVTLCGGTQTAPQSATLG 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA + + TPGRIL H  +G L ++ ++ LV+DEADRMLDMGF   I  + S  P  RQT
Sbjct: 122 FGAHIAVGTPGRILKHLEQGTLELSGLKTLVLDEADRMLDMGFGEEINRVISYAPEQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + + ++S    +NP  + V +    +   +  +     Q   +   L  LL 
Sbjct: 182 LLFSATYPEGIAQMSRGVQRNPVEVSVESLHEGSAIEQKLYEVPAGQ---RLDALTWLL- 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN K+   ++   L  +GFS  A++G+++QR R ++L  F  G+  ++V
Sbjct: 238 SHYQPASCVVFCNTKRACNDVADHLAAKGFSALALNGDLEQRERDQVLVRFANGSATILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++G V N+++    E ++HRIGRTGRAG+ G A +L    + + ++ I
Sbjct: 298 ATDVAARGLDIKELGAVINYELTYDPEVHVHRIGRTGRAGQQGLALSLYQPNEAQRVNLI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE---------KIDIAQHNHARKNNPIPQKS-----TGF 406
           E+   ++     GDL+ +   ++          ID  +    R  + +   +      G 
Sbjct: 358 EEY--QQAPMPQGDLAEIGREIKPIAPQMVTLSIDAGRKTKVRAGDILGALTGEGGIAGA 415

Query: 407 DRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFR 446
           D  K   S Q S++ +K S   + L++ +QE       +R
Sbjct: 416 DVGKIQISEQYSYVAVKRSVGSAALKR-LQEGKIKGRTYR 454


>gi|328876634|gb|EGG24997.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 806

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 142/395 (35%), Positives = 220/395 (55%), Gaps = 24/395 (6%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRA 68
           AVL  G+  PT IQ ++ P+ L+  D+ G+A+TG+GKT +F+LP +        LE G  
Sbjct: 418 AVL--GFTAPTSIQCQSWPIALKGRDMIGLAETGSGKTLAFLLPAIVHINAQPYLETGDG 475

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
               P  L+L PTRELA Q+ +  +K+G +  +    + GG+P   Q + L  G ++++ 
Sbjct: 476 ----PIVLVLTPTRELAMQIQNECDKFGSSSKIKNCCIYGGVPKYQQAQALRSGVEIVVA 531

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR++D   RG   +  +  LV+DEADRMLDMGF   I+ I   +   +QTL+FSAT  
Sbjct: 532 TPGRLIDFLERGGTNLRRVTYLVLDEADRMLDMGFEDQIRKILGQIRPDKQTLMFSATWP 591

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQLLQSQD 243
             +Q ++ +FL +P ++++ +   +A     + IE C      +  K+  L  Q L+S +
Sbjct: 592 KSVQSLAADFLVDPIQVKIGSAELSANHKVTQHIEIC-----EKMDKQTKLF-QYLKSIE 645

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
                IIF   K  V  L  ++   GF   AIHG+  Q  R   LS FK+G IQ ++A+D
Sbjct: 646 PGAKCIIFLETKSGVGMLARNMSYAGFKCEAIHGDKTQGERDFALSQFKDGKIQCLIATD 705

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +A+RGLD+ D+ +V N+D PN  E+YIHRIGRTGRAG  G A+TL   +D++    +  +
Sbjct: 706 VASRGLDVKDIKYVINYDFPNTIESYIHRIGRTGRAGATGTAYTLFTLDDMRLASDLVTV 765

Query: 364 IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           + +   ++   L  + P   K  I  +    + NP
Sbjct: 766 LAEASQYVPPQLEQMVPNKFK-SITDYKSQNRYNP 799


>gi|303288181|ref|XP_003063379.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455211|gb|EEH52515.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 513

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 134/362 (37%), Positives = 207/362 (57%), Gaps = 14/362 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+     V   +    +  PTP+Q   IP+ L R D+   AQTG+GKTA+F  P++  
Sbjct: 55  FQDVDFGAAVNKNIARCKFKNPTPVQKYAIPISLARRDLMACAQTGSGKTAAFCFPIIYG 114

Query: 62  ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +L++G A      R   P  L++ PTRELA Q+ +   K+     +   ++ GG P   Q
Sbjct: 115 LLDRGLAGSQRGGRKTFPLALVIAPTRELAIQIHEESRKFAYQTGVASCVIYGGAPAAQQ 174

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-- 173
            +++ERG D+L+ TPGR++D  +R K+ ++ +  L +DEADRMLDMGF P I+ I     
Sbjct: 175 FREMERGCDILVATPGRLIDLVDRAKISLSEVRYLALDEADRMLDMGFEPQIRQIVEQRD 234

Query: 174 VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +P T  RQT+LFSAT   E+Q+++ +FL++   + V    S+   I    +     Y  K
Sbjct: 235 MPPTGERQTMLFSATFPREIQRMASDFLKDYIFLTVGRVGSSHTLITQQ-IEYLRSYEDK 293

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
            ++L  L+ +   +   ++F   K+    L   L ++GF   +IHG+  Q+ R   L +F
Sbjct: 294 KSMLMDLVHAVKGLT--LVFVETKRGADQLEDWLSREGFPSTSIHGDRTQQEREYALKSF 351

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G   ++VA+D+AARGLDIP V HV NFD+P+  ++Y+HRIGRTGRAG+ G A      
Sbjct: 352 RSGRTPILVATDVAARGLDIPHVTHVINFDLPSDIDDYVHRIGRTGRAGKKGLATAFFTD 411

Query: 352 ED 353
           +D
Sbjct: 412 KD 413


>gi|304398629|ref|ZP_07380501.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304353840|gb|EFM18215.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 442

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 208/368 (56%), Gaps = 4/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ A+ + G+ +PT IQ   IP  L+  DV G A TGTGKTA+++LP L  
Sbjct: 6   FSELELDESLLQALQEKGFTRPTVIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LI+ PTRELA QVAD+  +  K+ +L +A + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRILIVTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          +E LV+DEADRMLDMGF   I+ I +   + +QT+
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLVLDEADRMLDMGFAQDIETIAAETRWRKQTM 185

Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  D ++  +E  L +P  +E +      + I+  +         K  LL  LL+
Sbjct: 186 LFSATLEGDNIRDFAERLLNDPVELEADPSRRERKKIQQWYYRA-DDLQHKTKLLIHLLK 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F  +++ +  L   L + G     + G + Q  R + +    EG + ++V
Sbjct: 245 QPDVTR-CIVFVRKRERLHELVSWLHEAGIRSSYLEGEMVQAKRNEAIKRLSEGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV HVFN+D+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  I
Sbjct: 304 ATDIAARGIDVEDVSHVFNYDMPRTADTYLHRIGRTGRAGRKGIAISLVEAHDFVLLGKI 363

Query: 361 EKLIEKKV 368
            + + + +
Sbjct: 364 TRYVNEPI 371


>gi|238493219|ref|XP_002377846.1| RNA helicase (Dbp), putative [Aspergillus flavus NRRL3357]
 gi|317157028|ref|XP_001826178.2| ATP-dependent RNA helicase dbp2 [Aspergillus oryzae RIB40]
 gi|220696340|gb|EED52682.1| RNA helicase (Dbp), putative [Aspergillus flavus NRRL3357]
          Length = 556

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 134/373 (35%), Positives = 208/373 (55%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ +PT IQ +  P+ L   DV GIA+TG+GKT S+ LP +  
Sbjct: 134 FDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVH 193

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 194 INAQPLLAPGDG----PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQI 249

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 250 RDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 309

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT ++SAT   E+++++ +FL +  ++ + +   +A       V   + + K+  +++
Sbjct: 310 DRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 369

Query: 237 QLLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L +  +   N  +IF   K+    +   L + G+   +IHG+  Q+ R  +L+ FK G 
Sbjct: 370 HLEKIMENRGNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGK 429

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A T    ++ K
Sbjct: 430 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSK 489

Query: 356 HI-DAIEKLIEKK 367
              D +  L E K
Sbjct: 490 QARDLVTILTEAK 502


>gi|323977024|gb|EGB72111.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
          Length = 457

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 140/377 (37%), Positives = 219/377 (58%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F    L +L+K  
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAF---GLGLLQKID 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ + +LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNMLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAITAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L   G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNDIGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W    ++S   PLE
Sbjct: 363 KLNWQTPPVNSSIVPLE 379


>gi|259147982|emb|CAY81231.1| Drs1p [Saccharomyces cerevisiae EC1118]
          Length = 754

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 142/388 (36%), Positives = 219/388 (56%), Gaps = 18/388 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L LS  V+  +   GYVKP+PIQ  TIP+ L   D+   A TG+GKTA+F++P++ 
Sbjct: 234 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L    A++   R ++L PTRELA QVAD  ++  +  + +T  L +GG+    Q + L+
Sbjct: 294 RLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLK 353

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D++I TPGR +DH  N     ++++EILV+DEADRML+ GF   +  I  L+P  RQ
Sbjct: 354 SRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQ 413

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  +++ +    L+ P RI ++ P   A  +   FV    +   K ALL  L+
Sbjct: 414 NLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLI 473

Query: 240 QSQD--TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  D    K  ++F  +K+    L   +   G SV  +HG++ Q  R+  ++ FK   + 
Sbjct: 474 RKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVP 533

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---- 353
           +++ +DLA+RGLDIP +  V N+D+P   E Y+HR+GRT RAGR G++ T V +      
Sbjct: 534 VLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 593

Query: 354 -----IKHIDAIEKLIEKK-----VDWL 371
                IK ++  + L + K     VDW+
Sbjct: 594 IVRAAIKSVEENKSLTQGKALGRNVDWV 621


>gi|290968690|ref|ZP_06560228.1| DEAD/DEAH box helicase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781343|gb|EFD93933.1| DEAD/DEAH box helicase [Megasphaera genomosp. type_1 str. 28L]
          Length = 420

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 141/370 (38%), Positives = 208/370 (56%), Gaps = 13/370 (3%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F  LG+SP ++C +L   G   PT +Q K +P + Q  D+ G AQTGTGKT +F+LP L 
Sbjct: 5   FQTLGVSP-ILCELLKKQGIAVPTQVQEKALPALFQGRDILGQAQTGTGKTLAFLLPALQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +   +      + LIL PTRELA Q+           ++ +  +IGG   E Q +KL+R
Sbjct: 64  QIHPDQ---HQEQVLILAPTRELAKQITAVATDLAAALHIDILNIIGGQTIENQLQKLQR 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH  R  L +  +  +++DEAD++L  GF+  +  +  + P  RQ L
Sbjct: 121 HPQMIIGTPGRLLDHCRRHSLNLTGVGRIIVDEADQLLQTGFLEDVDTLLGMTPKRRQLL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEH--CFVATYAQYSKKCALLQQL 238
            FSAT+ D+++ +++  + NP    V   SS A ETIE     +    ++S  C LL ++
Sbjct: 181 FFSATVPDKIKSLAKKHMHNPFVFHVLEGSSIALETIEQRIYMIKEEQKFSFLCKLLHEM 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     +IFCN K+    L   L + GF+V  +HG++ Q  R ++L +F +   QL
Sbjct: 241 -----NPYLSVIFCNTKERTSILAGQLIRAGFAVSELHGDLSQGRRTQVLRDFSKAKTQL 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HVFN+DVP+  + YIHRIGRTGRAG  G A TL    D   + 
Sbjct: 296 LVATDIAARGLDIAGITHVFNYDVPHDIDYYIHRIGRTGRAGNEGLAVTLATAADEDWVR 355

Query: 359 AIEKLIEKKV 368
            IE  I   +
Sbjct: 356 RIEHAIRATI 365


>gi|163915660|gb|AAI57684.1| LOC100135374 protein [Xenopus (Silurana) tropicalis]
          Length = 898

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 131/353 (37%), Positives = 207/353 (58%), Gaps = 3/353 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ P+L  
Sbjct: 208 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPILVH 267

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +  +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L+
Sbjct: 268 IMDQKELQPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQ 327

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I + V   RQT
Sbjct: 328 EGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIANHVRPDRQT 387

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT   +++K++ + L +P R+         E I        +   K   L ++L++
Sbjct: 388 LLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQVVEILPSGPEKWTWLTRRLVE 447

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T  + +IF  +K N   L ++L +    +  +HG++DQ  R K++S+FK+ +I ++V
Sbjct: 448 FTST-GSVLIFVTKKANAEELANNLRQDDHPLGLLHGDMDQSERNKVISDFKKKSIPVLV 506

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           A+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A TL+  +D
Sbjct: 507 ATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAHTLLTPKD 559


>gi|301612200|ref|XP_002935570.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Xenopus (Silurana)
           tropicalis]
          Length = 943

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 131/353 (37%), Positives = 207/353 (58%), Gaps = 3/353 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ P+L  
Sbjct: 253 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPILVH 312

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +  +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L+
Sbjct: 313 IMDQKELQPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQ 372

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I + V   RQT
Sbjct: 373 EGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIANHVRPDRQT 432

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT   +++K++ + L +P R+         E I        +   K   L ++L++
Sbjct: 433 LLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQVVEILPSGPEKWTWLTRRLVE 492

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T  + +IF  +K N   L ++L +    +  +HG++DQ  R K++S+FK+ +I ++V
Sbjct: 493 FTST-GSVLIFVTKKANAEELANNLRQDDHPLGLLHGDMDQSERNKVISDFKKKSIPVLV 551

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           A+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A TL+  +D
Sbjct: 552 ATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAHTLLTPKD 604


>gi|47217410|emb|CAG00770.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 456

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 153/421 (36%), Positives = 232/421 (55%), Gaps = 25/421 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGLS  +V      G  KPTP+Q   +P +LQ  D  G A+TG+GKTA+FVLP+L 
Sbjct: 3   DFSSLGLSDWLVKQCKQLGIHKPTPVQENCVPAILQGRDCMGCAKTGSGKTAAFVLPVLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    +     L+L PTRELA Q+A+ F   GK   L   +++GG+   +Q  +L  
Sbjct: 63  KLSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLRDCIVVGGMDMVSQASELSN 119

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFT 177
              V++ TPGR+ DH        M+ I+ L++DEADR+L+ G   F   ++ I   +P  
Sbjct: 120 QPHVVVATPGRLADHIRSSSTFSMSKIQFLIMDEADRLLEQGCTDFTKDLETIMPALPAK 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT+TD LQ++    +  P   E  + + T + ++  ++ T  +   K A L  
Sbjct: 180 RQTLLFSATLTDTLQELKNIAMNKPFFWESKSETRTVDELDQRYILTPEKV--KDAYLVH 237

Query: 238 LLQS---QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L+Q+   Q    + IIF N  KN   L   L++  F   ++H  + Q+ R   L+ FK  
Sbjct: 238 LIQTFTDQHDDWSIIIFTNTCKNCQILTMMLQQFNFPTISLHSMMKQKQRFANLAKFKAS 297

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             ++++A+D+AARGLDIP V  V N + P   + YIHR+GRT RAGR+G + TLV + DI
Sbjct: 298 VYKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDI 357

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI----AQHNHARKNNPIPQKSTGFDRRK 410
             + +IE+ I+ K+            P+E+ ++     Q N  R+   I  +ST FD +K
Sbjct: 358 HLVHSIEEQIQTKLKEF---------PVEEKEVLKILTQVNVTRRECEIRLESTDFDEKK 408

Query: 411 K 411
           +
Sbjct: 409 E 409


>gi|319897620|ref|YP_004135817.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
 gi|317433126|emb|CBY81500.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
          Length = 415

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 140/368 (38%), Positives = 214/368 (58%), Gaps = 10/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F+DL L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDLPLHPIVRDALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   +        PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 71  LLTYQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P    
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIALDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           R T+LFSAT++ ++++++   + +P+ IE+     T   I E  F   Y     K ALL 
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELF---YPSNQDKMALLL 247

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ +   +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G +
Sbjct: 248 TLMEDE-WPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDL 306

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   +
Sbjct: 307 DILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMN 366

Query: 357 IDAIEKLI 364
           + AIE+ I
Sbjct: 367 LPAIEEYI 374


>gi|170681328|ref|YP_001743833.1| ATP-dependent RNA helicase DbpA [Escherichia coli SMS-3-5]
 gi|170519046|gb|ACB17224.1| ATP-independent RNA helicase DbpA [Escherichia coli SMS-3-5]
          Length = 457

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 219/377 (58%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T+++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETFSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W     +S   PLE
Sbjct: 363 KLNWQTPPANSSIVPLE 379


>gi|157144489|ref|YP_001451808.1| ATP-dependent RNA helicase SrmB [Citrobacter koseri ATCC BAA-895]
 gi|157081694|gb|ABV11372.1| hypothetical protein CKO_00206 [Citrobacter koseri ATCC BAA-895]
          Length = 445

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 139/367 (37%), Positives = 214/367 (58%), Gaps = 6/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  
Sbjct: 6   FSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT+
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTM 185

Query: 182 LFSATMTD-ELQKVSENFLQNPKRIEVN-TPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LFSAT+    +   +E  L++P  +EV+ TPS+      H +         K ALL  LL
Sbjct: 186 LFSATLEGGAINDFAERLLEDP--VEVSATPSTRERKKIHQWYYRADDIQHKTALLVHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +  ++ I+F  +++ V  L   L + G + C + G + Q  R + +    +G + ++
Sbjct: 244 KQPEATRS-IVFVRKRERVHELAGWLREAGINNCYLEGEMVQGKRNEAIKRLTDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DIPDV HVFNFD+P  ++ Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 IATDVAARGIDIPDVSHVFNFDMPRSSDTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGK 362

Query: 360 IEKLIEK 366
           + + IE+
Sbjct: 363 VGRYIEE 369


>gi|311276036|ref|XP_003135023.1| PREDICTED: probable ATP-dependent RNA helicase DDX53-like [Sus
           scrofa]
          Length = 630

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 141/381 (37%), Positives = 224/381 (58%), Gaps = 8/381 (2%)

Query: 3   FAD-LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F D  G  P+++ ++  AG+ KPTPIQ +  P+VLQ  D+ GIAQTGTGKT S+++P   
Sbjct: 225 FEDAFGPYPELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFI 284

Query: 62  ILEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L      R +   P  L+L PTRELA QV     KY     L    + GG   + Q + 
Sbjct: 285 HLNSQPVSRGKRNGPGMLVLTPTRELALQVGAECSKYSYK-GLKSVCIYGGGNRKGQIQD 343

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           + +G D++I TPGR+ D      + + +I  LV+DEAD+MLD+GF   I  I   V   R
Sbjct: 344 IMKGVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDR 403

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQ 237
           QT++ SAT  D +++++ ++L+ P  + V T    A +T++   + T  +  +K +L Q+
Sbjct: 404 QTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEE--EKRSLFQE 461

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            LQS       I+F ++K    +L   L  QG  V ++HG+ +Q  R + L +FK G ++
Sbjct: 462 FLQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVK 521

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+DLA+RGLD+ DV HVFN++ P   E Y+HR+GRTGRAG+ G++ TL+ ++D K  
Sbjct: 522 ILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVA 581

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + +++++    +  DL S+
Sbjct: 582 GELIEILQRANQSIPEDLLSM 602


>gi|298504304|gb|ADI83027.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens KN400]
          Length = 460

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 148/404 (36%), Positives = 224/404 (55%), Gaps = 15/404 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L   ++  +   GY + TPIQ  ++PL+L   DV   A+TG+GKTA+F + +L+ 
Sbjct: 6   FSSLRLKAPMLRNLASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLLSR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+    RV+    L+L PTRELA QV     +  +   N+ +  + GG+PF  Q   LE 
Sbjct: 66  LDALSFRVQ---ALVLCPTRELADQVGKELRRLARFTDNIKILTICGGVPFGPQLGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V+I TPGR+LDH  RG L ++ +  LV+DEADRMLDMGF   I  + +  P  RQTL
Sbjct: 123 GAHVVIGTPGRLLDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDISALIAAAPPKRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D +  +S    + P  + V+        IE  F        ++   ++++L  
Sbjct: 183 LFSATYPDSIAAMSAGVQREPVEVSVDEVHGEG-AIEQVFYEV--DSGQRIEAVERIL-G 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ +IFCN K     + ++L  +G++  AIHG++DQR R ++L  F   +  ++VA
Sbjct: 239 HYRPESALIFCNTKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRFANRSASVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++  V N+++    E + HRIGRTGRAG  G A +LV   + + I+ I 
Sbjct: 299 TDVAARGLDIKELSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLVTPRESRLIETIA 358

Query: 362 KLIEKKVDWLNGDLSSL-----NPPLEKIDIAQHNHARKNNPIP 400
            +    +  + GDLS+L      PPL  +     +  RKN   P
Sbjct: 359 DVPGSTI--VRGDLSTLAPLTAKPPLPPMVTLCIDGGRKNKLRP 400


>gi|238892385|ref|YP_002917119.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae NTUH-K2044]
 gi|238544701|dbj|BAH61052.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 421

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P V+ A+   G+   TPIQ   +PL L+  DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPAVIEALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E       L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRQVNQPRALIMAPTRELAVQIHADAEPLALATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAT 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q LL+ ++     I+F N K    ++   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLLE-EEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|209762788|gb|ACI79706.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|320646171|gb|EFX15111.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H- str.
           493-89]
 gi|320651466|gb|EFX19862.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H- str. H
           2687]
          Length = 444

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 137/353 (38%), Positives = 204/353 (57%), Gaps = 4/353 (1%)

Query: 18  DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTL 76
           D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  +L+  R +   PR L
Sbjct: 21  DKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRIL 80

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           IL PTRELA QVAD+  +  K+ +L +A + GG+ +    +      D+++ T GR+L +
Sbjct: 81  ILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQY 140

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQKVS 195
                     +E L++DEADRMLDMGF   I++I     + +QTLLFSAT+  D +Q  +
Sbjct: 141 IKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFA 200

Query: 196 ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
           E  L++P  +  N PS+      H +         K ALL  LL+  +  ++ I+F  ++
Sbjct: 201 ERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFVRKR 258

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           + V  L + L + G + C + G + Q  R + +    EG + ++VA+D+AARG+DIPDV 
Sbjct: 259 ERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVS 318

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           HVFNFD+P   + Y+HRIGRT RAGR G A +LV   D   +  + + IE+ +
Sbjct: 319 HVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371


>gi|291396480|ref|XP_002714472.1| PREDICTED: rCG25924-like [Oryctolagus cuniculus]
          Length = 649

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 145/388 (37%), Positives = 225/388 (57%), Gaps = 14/388 (3%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P+V+  +  AG+ KPTPIQ +T P+VLQ  DV G+AQTGTGKT S+++P    L+     
Sbjct: 254 PEVMKNIEKAGFKKPTPIQSQTWPIVLQGIDVIGVAQTGTGKTLSYLMPGFIHLDCQPVE 313

Query: 70  VR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
            R  P  L+L PTRELA QV     KY    NL    + GG   EAQ + + +G D++I 
Sbjct: 314 KRNGPGMLVLTPTRELALQVQAECSKYSYK-NLRSVCIYGGGDREAQIQDVSKGVDIVIA 372

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR+ D      + + ++  LV+DEAD+MLDMGF P I  I   V   RQT++ SAT  
Sbjct: 373 TPGRLNDLQMNNFIRLKSVTYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTIMTSATWP 432

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
             ++++++++L+ P  + V T    A  T++   + T  +  +K   +Q+ L++      
Sbjct: 433 YGVRRLAQSYLKEPMLVYVGTLDLVAVSTVKQNIIITTEE--EKRIHIQKFLENMSPKDK 490

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            I+F ++K    +L   L  Q  SV ++HGN +Q  R K L NFK G +++++A+DLA+R
Sbjct: 491 VIVFVSRKIVADHLSSDLVLQHLSVESLHGNREQSDREKALKNFKTGKVRILIATDLASR 550

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           GLD+ D+ HV+N+D P   E Y+HR+GRTGRAG  G + TL+ + D +    +  ++E+ 
Sbjct: 551 GLDVHDITHVYNYDFPRNIEEYVHRVGRTGRAGNTGVSITLITRNDWRVAAELIHILER- 609

Query: 368 VDWLNGDLSSLNPPLEKIDIAQHNHARK 395
                   ++ N P E + +A+  +A K
Sbjct: 610 --------ANQNIPEELVAMAERYNASK 629


>gi|126632201|gb|AAI33101.1| Ddx46 protein [Danio rerio]
          Length = 1032

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 147/442 (33%), Positives = 236/442 (53%), Gaps = 15/442 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +   G+S KV+ A+    Y KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 356 WVQCGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 415

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R       P  +I+ PTRELA Q+    +K+ K+  L V  + GG     Q  +L+
Sbjct: 416 ILDQRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGISEQIAELK 475

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +VIDEADRM DMGF P +  I   V   
Sbjct: 476 RGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPD 535

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSAT    ++ ++   L  P  ++V   S     +E   +    +  KK   L +
Sbjct: 536 RQTVMFSATFPRTMEALARRILSKPVEVQVGGRSVVCSDVEQHVIVI--EEEKKFLKLLE 593

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L       + IIF +++++   L   L K  +   ++HG IDQ  R  I+++FK G  +
Sbjct: 594 ILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACR 653

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRA   G A+T + +   ++ 
Sbjct: 654 LLVATSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRARNKGYAYTFITEGQARYS 713

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             I K +E     L+G  SS+   LE++        +    I + S+GF  +   +  + 
Sbjct: 714 GDILKALE-----LSG--SSVPAELEQLWTNFKEQQKAEGKIIKSSSGFSGKGFKF-DET 765

Query: 418 SHIPLKESEKISKLQQDIQEND 439
            H    E +K+ K    + ++D
Sbjct: 766 EHALANERKKLQKAALGLHDSD 787


>gi|85711917|ref|ZP_01042972.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
 gi|85694314|gb|EAQ32257.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
          Length = 421

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 144/366 (39%), Positives = 219/366 (59%), Gaps = 8/366 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  LGL  K+  A+  AG+   TPIQ  ++P+ L   DV G AQTGTGKT +F+L     
Sbjct: 11  FETLGLHDKIQQALTSAGFENCTPIQALSLPVALSNQDVAGQAQTGTGKTLAFLLATFNR 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++  ++    PR +I+ PTRELA Q+A++ +   +   L  A++ GG  +EAQ ++L  
Sbjct: 71  LMQSQKSSEAGPRAIIMAPTRELAIQIANDAKILTQTCELKTAVIYGGEGYEAQQQQLAD 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTRQ 179
             D++I T GRI+D + +    ++NIE++V+DEADRM D+GFI  I+ +   +P    R 
Sbjct: 131 KPDIIIGTTGRIIDFYKQSLFPLDNIEVVVLDEADRMFDLGFINDIRYLLKAMPDPSERL 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQL 238
            LLFSAT++  +Q+++   +  P ++EV     T   I E  F   Y     K  LL  L
Sbjct: 191 NLLFSATLSYRVQELAYEHMNAPTKVEVEPQQKTGVRISEELF---YPSKYDKMPLLLTL 247

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ +D     I+F N K     +   LE  G  V  + G++ Q+ R+KIL +F EG + +
Sbjct: 248 IE-EDWPDRAIVFANTKHGCDKVHQWLEINGHRVGLLTGDVPQKKRLKILDDFAEGHLDI 306

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGL IP+V HV+NFD+P+  E+Y+HRIGRTGRAG  G A +L  +E + ++ 
Sbjct: 307 LVATDVAARGLHIPEVTHVYNFDLPDDCEDYVHRIGRTGRAGASGAAVSLACEEYVYNLP 366

Query: 359 AIEKLI 364
           AIE  I
Sbjct: 367 AIEDYI 372


>gi|91206538|sp|Q2U070|DBP2_ASPOR RecName: Full=ATP-dependent RNA helicase dbp2
 gi|83774922|dbj|BAE65045.1| unnamed protein product [Aspergillus oryzae]
          Length = 554

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 134/373 (35%), Positives = 208/373 (55%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ +PT IQ +  P+ L   DV GIA+TG+GKT S+ LP +  
Sbjct: 132 FDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVH 191

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 192 INAQPLLAPGDG----PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQI 247

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 248 RDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 307

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT ++SAT   E+++++ +FL +  ++ + +   +A       V   + + K+  +++
Sbjct: 308 DRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 367

Query: 237 QLLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L +  +   N  +IF   K+    +   L + G+   +IHG+  Q+ R  +L+ FK G 
Sbjct: 368 HLEKIMENRGNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGK 427

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A T    ++ K
Sbjct: 428 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSK 487

Query: 356 HI-DAIEKLIEKK 367
              D +  L E K
Sbjct: 488 QARDLVTILTEAK 500


>gi|332878110|ref|ZP_08445839.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332683848|gb|EGJ56716.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 582

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 126/355 (35%), Positives = 211/355 (59%), Gaps = 8/355 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61
           F  LGL   ++ A+ D G+  P+ IQ K IP +L+   D+  +AQTGTGKTA+F  P+L 
Sbjct: 4   FEQLGLDEPILRAITDMGFETPSEIQQKAIPTLLEDDTDMVALAQTGTGKTAAFGFPLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           +++      ++ + LIL PTREL  Q+A   + Y K    + V  + GG   E Q + L+
Sbjct: 64  LIDTDS---KLTQGLILSPTRELCLQIASELKNYAKYLPKVNVVAVYGGASIEEQARSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA +++ TPGR+ D   R  + +++I   V+DEAD ML+MGF   I  I S  P  + T
Sbjct: 121 KGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILSHTPKEKST 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +E+ +++  F++ P  I V T +  + T++H +     ++  +   L++L  
Sbjct: 181 WLFSATMPNEVARIARQFMRKPIEITVGTRNQASSTVQHEYYVVNGRHRYQA--LKRLAD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   + + ++FC  KK+   +   L + G++  A+HG++ Q  R  ++ +F+   IQ++V
Sbjct: 239 ANPDIFS-VVFCRTKKDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQMLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           A+D+AARG+D+ D+ HV ++ +P+  E Y HR GRTGRAG+ G +  LV K +++
Sbjct: 298 ATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVLVPKSELR 352


>gi|15603705|ref|NP_246779.1| ATP-dependent RNA helicase SrmB [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12722265|gb|AAK03924.1| SrmB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 442

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 133/366 (36%), Positives = 209/366 (57%), Gaps = 4/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  L+P ++ A+   GY +PT IQ +TIP  +++ DV G A TGTGKTA+F+LP +  
Sbjct: 6   FQDFDLAPALLKALAKKGYTRPTAIQQETIPAAMEQRDVLGSAPTGTGKTAAFLLPAIQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVA+  E + +  NL++A + GG+ ++   +    
Sbjct: 66  LLDYPRRKPGAPRILILTPTRELAMQVAEQAESFAEFTNLSIATITGGVAYQNHGEIFNS 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QTL
Sbjct: 126 NQDIVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  E L   +   L  P +I+        + I+  +    +    K  LL + + 
Sbjct: 186 LFSATLEGELLVDFASRLLTEPVQIDAEPSRRERKKIQQWYYHADSN-EHKIKLLARFI- 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++ +  GI+F  +++ V  L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 244 DEEQVSRGIVFVRRREEVRELSETLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIEDVSHVMNFDLPYSADTYLHRIGRTARAGKKGVAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK 366
           ++  ++
Sbjct: 364 KRYTQE 369


>gi|109900519|ref|YP_663774.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas atlantica T6c]
 gi|122971428|sp|Q15N18|RHLB_PSEA6 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|109702800|gb|ABG42720.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 421

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 151/419 (36%), Positives = 243/419 (57%), Gaps = 19/419 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FADL ++ +VV A+  A +   TPIQ  ++P +L+ +D+ G AQTGTGKT +F++     
Sbjct: 11  FADLPINEQVVKALSAANFSHCTPIQALSLPPLLEGNDIAGQAQTGTGKTIAFLVATFHY 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L   +   + PR +I+ PTRELA Q+ ++ E   ++  L++ L+ GG  +++Q +KLE 
Sbjct: 71  LLSNPQPTKKQPRAIIMAPTRELAVQIFNDAELLSQHTGLSLGLIYGGEGYQSQREKLEE 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTRQ 179
           G D++I T GRI+D++ +    +  I++ V+DEADRM D+GFI  I+ + + +P    R 
Sbjct: 131 GVDIIIGTTGRIIDYYKQNIFSLAGIQVAVLDEADRMFDLGFIKDIRYLFNRMPKPTERL 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQL 238
           ++LFSAT++  +Q+++   + NP  ++V     T   I E  F   Y     K ALL  L
Sbjct: 191 SMLFSATLSYRVQELAYEHMDNPTHVQVEPERKTGTRIKEELF---YPSDEDKMALLLSL 247

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ +   K  I+F N K +   +   L+  G  V  + G++ Q  R+KIL +F  G + +
Sbjct: 248 MEEEWPDK-AIVFANTKHSCEKVADWLQADGHRVGLLSGDVPQNKRLKILEDFTSGKLDI 306

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGL IP V HVFN+D+P+ AE+Y+HRIGRTGRAG+ G + +   +    ++ 
Sbjct: 307 LVATDVAARGLHIPMVSHVFNYDLPDDAEDYVHRIGRTGRAGQSGSSISFACERYALNLP 366

Query: 359 AIEKLIEKKVD----WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK--STGFDRRKK 411
           AIE  IE  +       +  L  + PP  +     H    +N   PQK  S+G   R+K
Sbjct: 367 AIETYIEHAIPVTEYQADALLRDVTPPKPR-----HKKRMQNGRNPQKRQSSGSRNRRK 420


>gi|114048006|ref|YP_738556.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113889448|gb|ABI43499.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 449

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 207/370 (55%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L  +++ ++   G   PT IQ + +P+ L   D+   ++TG+GKT +F+LP L
Sbjct: 1   MQFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   RA   R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRVISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            +    ++ TPGRI DH  +  L +N +E+LV+DEADRMLD+GF P ++ I +     R 
Sbjct: 121 AKEPHFIVATPGRIADHLEQKNLFLNGLELLVLDEADRMLDLGFAPQLKAINAAADHKRR 180

Query: 179 QTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   E+ +++   L+NP  + +    +  + I +  ++  +  +  K ALL 
Sbjct: 181 QTLMFSATLDHSEINEIAAALLKNPSHVAIGAAHTEHQDITQRIYLCDHLDH--KEALLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL S +T K  IIF   + +   L   L  QGF+  A+ G + Q +R +I+  F  G  
Sbjct: 239 HLL-SDETHKQVIIFTATRADTERLASKLSAQGFATAALSGELKQAARNQIMDQFARGQQ 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +
Sbjct: 298 QILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDN 357

Query: 357 IDAIEKLIEK 366
              ++  + K
Sbjct: 358 FKKVQLFLRK 367


>gi|121945880|dbj|BAF44659.1| RNA helicase [Neobenedenia girellae]
          Length = 670

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 143/381 (37%), Positives = 218/381 (57%), Gaps = 21/381 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L   +   V  A Y +PTP+Q   +P++    D+   AQTG+GKTA+F++PML  
Sbjct: 191 FTDLDLHKIIRDNVELARYSRPTPVQKYAVPIIAAGRDLMACAQTGSGKTAAFLIPMLNN 250

Query: 63  L-------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
           +             E+ R R + P  L++ PTRELA+Q+ D  +K+    ++   ++ GG
Sbjct: 251 MFVHGPADSLDRCNEEDR-RAQFPTGLVIAPTRELASQIYDEAKKFSYRSHVRPCVVYGG 309

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
              + Q   L RG +V+  TPGR++D  +RGKL ++    LV+DEADRMLDMGF P I+ 
Sbjct: 310 AAIKGQLSDLSRGCNVIFATPGRLIDIIDRGKLKLDCCRFLVLDEADRMLDMGFEPQIRE 369

Query: 170 ITS-LVPF--TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
           I    +P    RQTL+FSAT   ++Q ++++FL++   + V    ST+E I    V    
Sbjct: 370 IIQRYMPNGDNRQTLMFSATFPPQIQNLAKDFLKSYIFLSVGRVGSTSENITQSLVWV-E 428

Query: 227 QYSKKCALLQQL-LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
           +  K+ ALL  +    +D +   ++F   K+   +L   L  + FSV +IHG+  Q  R 
Sbjct: 429 EVDKRNALLDFIDFTKEDNLT--LVFVETKRGADSLEEFLYNREFSVSSIHGDRTQDERE 486

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L NF+ G   +MVA+ +AARGLDIP+V HV N+D+PN  + Y+HRIGRTGR G  GKA
Sbjct: 487 RALKNFRSGKTPIMVATAVAARGLDIPNVKHVINYDLPNDIDEYVHRIGRTGRVGNLGKA 546

Query: 346 FTLVAKEDIKHIDAIEKLIEK 366
            +    ++      + +L+E+
Sbjct: 547 TSFFNDKNKNLARDLVELLEE 567


>gi|160902412|ref|YP_001567993.1| DEAD/DEAH box helicase domain-containing protein [Petrotoga mobilis
           SJ95]
 gi|160360056|gb|ABX31670.1| DEAD/DEAH box helicase domain protein [Petrotoga mobilis SJ95]
          Length = 530

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 154/411 (37%), Positives = 231/411 (56%), Gaps = 27/411 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F  +GLS  ++ A+   GY  PTPIQ K IPL+L  +++V G AQTGTGKTA+F +P++ 
Sbjct: 4   FQQMGLSDNILSAIDRKGYEAPTPIQEKVIPLLLSGKNNVIGQAQTGTGKTAAFGIPLIE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L++    V+    L+L PTRELA QV +  +    N  L +  + GG+    Q + L+R
Sbjct: 64  RLDEKANDVQ---ALVLTPTRELALQVCNEIDSLKGNKRLNLLPVYGGVSIGNQIRALKR 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGRI+DH NRG L +  I+ LVIDEAD MLDMGFI  ++ I S     +Q L
Sbjct: 121 RVDLVVGTPGRIIDHLNRGTLDITKIKYLVIDEADEMLDMGFIEDVEMILSKTNKEKQIL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY------SKKCALL 235
           +FSATM   +  ++   + N       T ++  E  E   V    Q       S K  LL
Sbjct: 181 MFSATMPQRIVTLARKHMGN-----FETVTTVQENKEDITVKKAKQIYYMISESNKIELL 235

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +L+   DT   G++F   K     + + L K+G+   A++G++ Q  R +I+  FK   
Sbjct: 236 SRLIDI-DTNFYGLVFTKTKVQSEEIANELIKKGYEAEALNGDVSQNQRERIMDRFKSKR 294

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED-- 353
           I++++++D+AARG+DI ++ +V N+ +P   ENYIHRIGRT RAG  G A T V   +  
Sbjct: 295 IKILISTDVAARGIDIDNLKYVINYSLPQNPENYIHRIGRTARAGNEGTAITFVTPTEYR 354

Query: 354 ----IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI-DIAQHNHARKNNPI 399
               IKH  + + +IE+       D+  +N  +EKI D  + N A+  +PI
Sbjct: 355 RFMFIKH--SSKAIIEEAKIPQAKDI--VNAKVEKIKDEIKSNLAKDIDPI 401


>gi|157413572|ref|YP_001484438.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9215]
 gi|157388147|gb|ABV50852.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9215]
          Length = 593

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 135/371 (36%), Positives = 212/371 (57%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D G +  ++ ++++ GY  PTPIQ   IP ++   D+ G AQTGTGKTA+F LP++  
Sbjct: 53  FLDFGFNQSILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEK 112

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L   +      + L++ PTRELA QVA++F+ Y     N     + GG  +  Q   L+R
Sbjct: 113 LTNNKEL--NAKVLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKR 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DV++ TPGRI+DH  +G   + +I  LV+DEAD ML+MGF+  I+ I   +P  +Q +
Sbjct: 171 KVDVVVGTPGRIMDHIRQGTFKIKHINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMV 230

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++ +++ +L +P  I + +     + I   F+  Y Q   K   L+++L+ 
Sbjct: 231 LFSATMPSEIRNIAKKYLNDPAEILIKSVKKETQLISQKFL--YVQRHHKLDALKRILEL 288

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  IIF   K    ++  +LE  G +V  ++G+I Q  R   +   K+G I ++VA
Sbjct: 289 NN--EGVIIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVA 346

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D P   E Y HRIGRTGRAGR G+A   V + +   +  +E
Sbjct: 347 TDVAARGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLE 406

Query: 362 KLIEKKVDWLN 372
                K++ +N
Sbjct: 407 NSTRTKIEEIN 417


>gi|145592945|ref|YP_001157242.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           tropica CNB-440]
 gi|145302282|gb|ABP52864.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440]
          Length = 621

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 142/404 (35%), Positives = 220/404 (54%), Gaps = 14/404 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA+LG   + V A+  AG  +   IQ   +P+ L+  D+ G A TGTGKT  F +P+L  
Sbjct: 99  FAELGARKETVDALNAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGVPLLER 158

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +          P+ L++ PTREL  QVA +    G    + V  + GG+ +E Q + L  
Sbjct: 159 VFAPAEGGDGTPQALVVVPTRELGIQVAKDLHAAGSTRGVRVLPIYGGVAYEPQIEALRT 218

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G ++L+ TPGR+LD   + +L ++ +  LV+DEADRMLD+GF+  ++ I +++P  RQT+
Sbjct: 219 GVEILVGTPGRLLDLAKQKQLKLDRVRALVLDEADRMLDLGFLDDVEKILAMLPEERQTM 278

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +  +S  FL+ P  I     + T  + +   +A       K  ++ ++LQ+
Sbjct: 279 LFSATMPDPIVALSRRFLRRPVTIHAGHTAETGPSPQTQQLAYRTHSLNKIEIVARILQA 338

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      +IF   K+    +   L+ +GF+V A+HG++ Q +R + L  F+ G I  +VA
Sbjct: 339 KGRGLT-MIFTRTKRAADRVAADLDFRGFAVAAVHGDLGQGARERALRAFRTGKIDTLVA 397

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+  V HV N+D P   + Y HRIGRTGRAG  G A T V  +D+     I+
Sbjct: 398 TDVAARGIDVSGVTHVLNYDCPEDQDTYTHRIGRTGRAGASGVAVTFVDWDDMPRWRIID 457

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           K +          L    PP E    + H +A  +  IP + TG
Sbjct: 458 KTL---------GLEMPEPP-ETYHTSPHLYAELD--IPSEVTG 489


>gi|302854279|ref|XP_002958649.1| hypothetical protein VOLCADRAFT_69703 [Volvox carteri f.
           nagariensis]
 gi|300256038|gb|EFJ40315.1| hypothetical protein VOLCADRAFT_69703 [Volvox carteri f.
           nagariensis]
          Length = 582

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 211/371 (56%), Gaps = 30/371 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F ++ L P ++  +    Y  PTPIQ + +P+ L   D+ G A+TG+GKTASF +PM+  
Sbjct: 137 FQEMNLHPNILADIAHHKYETPTPIQAQGLPIALSGRDILGCAETGSGKTASFSIPMIQH 196

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEA 114
                 L  G      P  L+L PTRELA Q+      + ++   N+  ++++GG+P + 
Sbjct: 197 CLNQPPLRPGDG----PMALVLAPTRELAQQIEREVRAFSRSSSRNVRTSIVVGGVPMQE 252

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  G +V++ TPGR +D   +    ++ +  +V+DEADRMLDMGF P I+ + + +
Sbjct: 253 QRHDLRNGVEVVVATPGRFIDLLQQSYTNLSRVSYVVLDEADRMLDMGFEPQIKEVMNNL 312

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIE---VNTPSS-TAETIEHCFVATYAQYSK 230
           P   QTLLFSATM  E+++++  +L  P  ++   V+TP++  A+ +EH      A   +
Sbjct: 313 PPRHQTLLFSATMPKEIEELARAYLNKPVTVKIGAVSTPTANVAQRLEH------APEGQ 366

Query: 231 KCALLQQLLQSQ--------DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
           K  +L  L+ S+          M   I+F  +K     +  +L++ G    A+HG + Q 
Sbjct: 367 KLDILVALISSEVAAEASGGPPMPLTIVFVERKNRCDEVAAALQEDGIPANALHGGLGQF 426

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R   L +F +G I+++VA+DLA+RGLD+  +GHV N D+P   E+Y+HRIGRTGRAG  
Sbjct: 427 EREAALRDFAKGHIKVLVATDLASRGLDVKGIGHVINMDLPKTFEDYVHRIGRTGRAGTK 486

Query: 343 GKAFTLVAKED 353
           G+A +L    D
Sbjct: 487 GRATSLWNDRD 497


>gi|218704863|ref|YP_002412382.1| ATP-dependent RNA helicase DbpA [Escherichia coli UMN026]
 gi|293404872|ref|ZP_06648864.1| ATP-dependent RNA helicase DbpA [Escherichia coli FVEC1412]
 gi|298380516|ref|ZP_06990115.1| ATP-independent RNA helicase DbpA [Escherichia coli FVEC1302]
 gi|300900110|ref|ZP_07118304.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|331672872|ref|ZP_08373658.1| ATP-independent RNA helicase DbpA [Escherichia coli TA280]
 gi|218431960|emb|CAR12845.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           UMN026]
 gi|291427080|gb|EFF00107.1| ATP-dependent RNA helicase DbpA [Escherichia coli FVEC1412]
 gi|298277958|gb|EFI19472.1| ATP-independent RNA helicase DbpA [Escherichia coli FVEC1302]
 gi|300356389|gb|EFJ72259.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|331070093|gb|EGI41462.1| ATP-independent RNA helicase DbpA [Escherichia coli TA280]
          Length = 457

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 142/383 (37%), Positives = 221/383 (57%), Gaps = 9/383 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L + P      LD  GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLDELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++   A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+
Sbjct: 64  QID---ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL 
Sbjct: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W    ++S   PLE
Sbjct: 357 SDMLQIKLNWQTPPVNSSIVPLE 379


>gi|73667695|ref|YP_303710.1| ATP-dependent RNA helicase [Methanosarcina barkeri str. Fusaro]
 gi|72394857|gb|AAZ69130.1| ATP-dependent RNA helicase [Methanosarcina barkeri str. Fusaro]
          Length = 579

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 206/361 (57%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61
           F  LGLS  ++ A+   G+ +PTPIQ K IPL L+   D+ G AQTGTGKT +F  P++ 
Sbjct: 7   FKALGLSDSMLKALKKKGFEEPTPIQEKVIPLFLKGECDIIGQAQTGTGKTTAFGAPIIE 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + +   +V+    ++L PTRELA QV++       +  L +  + GG     Q + L+ 
Sbjct: 67  KIPEKSGKVQ---AIVLTPTRELAIQVSEELNSLKGDKKLHIVPIYGGQSMTQQFRMLKS 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR++DH  R  L + NI   V+DEAD ML+MGFI  I+ I       ++ L
Sbjct: 124 GVDIVVGTPGRVIDHLERKSLNLENIAYFVLDEADEMLNMGFIDDIKEILKATGPDKRML 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   +  + +  ++N + + +          E  +     + S K   L +++  
Sbjct: 184 FFSATMPKPILGIIKKHMKNYEYVAIKKEDLDVNLTEQIYFEV--KESDKFEALCRIIDI 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D    G++FC  K +   L   L  +G++  A+HG++ QR R KIL+ F++  I ++VA
Sbjct: 242 EDEF-YGLVFCRTKTDTSQLAQKLGDRGYAADALHGDLSQREREKILNRFRKQKINILVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T V   + + +  I+
Sbjct: 301 TDVAARGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEYRRLTYIK 360

Query: 362 K 362
           K
Sbjct: 361 K 361


>gi|254389955|ref|ZP_05005177.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197703664|gb|EDY49476.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 501

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 132/346 (38%), Positives = 191/346 (55%), Gaps = 5/346 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L  
Sbjct: 80  FADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLAR 139

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GR   + PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LERG
Sbjct: 140 LAQGRTEKKKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERG 199

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+ D  NRG   + N+E+ V+DEAD+M D+GF+P +  +   VP   Q +L
Sbjct: 200 VDILVATPGRLRDIINRGACSLENVEVAVLDEADQMSDLGFLPEVTELLDQVPGGGQRML 259

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E+  + + +L NP   EV++      T+ H  +       K  A +   + ++
Sbjct: 260 FSATMENEISTLVKRYLTNPVSHEVDSAQGNVTTMTHHVLVV---KPKDKAPVTAAIAAR 316

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L + G    A+HG + Q +R + L++FK+G +  +VA+
Sbjct: 317 KGRT--IIFVRTQLGADRIAEQLREAGVKADALHGGMTQGARTRTLADFKDGYVNALVAT 374

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           D+AARG+ +  +  V N D     ++Y+HR GRT RAG+ G   +L
Sbjct: 375 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGTVVSL 420


>gi|170768852|ref|ZP_02903305.1| ATP-independent RNA helicase DbpA [Escherichia albertii TW07627]
 gi|170122400|gb|EDS91331.1| ATP-independent RNA helicase DbpA [Escherichia albertii TW07627]
          Length = 457

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 144/383 (37%), Positives = 219/383 (57%), Gaps = 9/383 (2%)

Query: 3   FADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L + P    A L + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLANLNELGYLTMTPVQAAALPAILAGRDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++     +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+
Sbjct: 64  HVD---VTLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGIQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVTLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  +S    +NP  IE++T +     IE  F  T AQ   K  LL++LL 
Sbjct: 181 LLFSATWPEAIAAISGRVQRNPLAIEIDT-TEALPPIEQQFYETSAQ--GKIPLLKRLL- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +  +L + G S  A+HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVYDALNEAGQSALALHGDLEQRERDQTLVRFSNGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + +
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIL 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W     SS   PLE
Sbjct: 357 SDMLQIKLNWQTPPASSAVVPLE 379


>gi|153839306|ref|ZP_01991973.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus AQ3810]
 gi|149747170|gb|EDM58158.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus AQ3810]
          Length = 412

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 141/368 (38%), Positives = 211/368 (57%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS +++ A L   + KPT IQ   IP +L   D+  +A TG+GKT ++ LP+L
Sbjct: 1   MPFSTLSLSSELIHA-LPKDFKKPTDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +    + LIL PTRELA QV++   + G+  +L    L GG+  E Q+  L 
Sbjct: 60  EKLGVNPEQ----KALILVPTRELAMQVSEAINQVGQALDLNTVCLCGGVDKEQQHHALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ T GR++D  N G L ++NI  LV+DEADR+LDMGF P +QNI  L+   RQT
Sbjct: 116 TNPHILVATTGRLVDLANNG-LDLSNIHYLVLDEADRLLDMGFWPDVQNIAGLISNQRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT +DEL+  ++  +Q PK++  +  +ST + I             K   L +L+Q
Sbjct: 175 AMFSATFSDELKGKAKLLMQAPKQVAAHQENSTNQDIAETL--HLVNKGSKTKALIELIQ 232

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     ++F   K+N   L   L K G S  A+HGN  Q  R + L+ FK G IQ+++
Sbjct: 233 -KNAWTQVLVFIGAKENADGLAKKLNKAGISTNALHGNKSQDEREEALAQFKSGQIQVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG  G A +LV   ++  ++AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVAMSLVCHGEMDALNAI 351

Query: 361 EKLIEKKV 368
             L ++ +
Sbjct: 352 RHLTQRAL 359


>gi|332675736|gb|AEE72552.1| DEAD-box ATP-dependent RNA helicase CshA [Propionibacterium acnes
           266]
          Length = 564

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 146/398 (36%), Positives = 224/398 (56%), Gaps = 24/398 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L  
Sbjct: 55  FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 114

Query: 63  L----EKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    ++G   +     P+ L++ PTRELA QV+ +           V  + GG+ +E+Q
Sbjct: 115 ITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQ 174

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G DV++ TPGR+LD   R  L +++  I+V+DEAD MLD+GF+P ++N+    P
Sbjct: 175 IDALKAGVDVVVGTPGRLLDLSQRKDLDLSHERIVVLDEADEMLDLGFLPDVENLIGRTP 234

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYAQYSKKC 232
            +RQT+LFSATM   +  ++ + L+ P  +     +T ++  +T +  +    A    K 
Sbjct: 235 ASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY---QAHPLDKI 291

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            ++ ++LQ+ D  K  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+
Sbjct: 292 EIIGRILQANDVEKV-IIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFR 350

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   
Sbjct: 351 HGEATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWA 410

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           D+       KLI K    LN +LS    P+E    + H
Sbjct: 411 DVTRW----KLINKT---LNLELSE---PVETYSTSPH 438


>gi|323507844|emb|CBQ67715.1| probable RNA helicase dbp2 (DEAD box protein) [Sporisorium
           reilianum]
          Length = 536

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 133/360 (36%), Positives = 204/360 (56%), Gaps = 12/360 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    ++  +   G+ +P+ IQ +  P+ L   D+  IA+TG+GKT  F LP +  
Sbjct: 115 FDEAGFPEYILSEIKKMGFSEPSAIQSQAWPMALSGRDLVAIAETGSGKTIGFALPAMVH 174

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L+ G      P  LIL PTRELA Q+     ++G +  L    + GG+P   Q 
Sbjct: 175 INAQPLLKPGDG----PIALILAPTRELANQIQVECNRFGGSSRLRTCAVYGGVPKGPQI 230

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+RGA++ I TPGR++D  + GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 231 RDLQRGAEICIATPGRLIDMVDAGKTNLRRVTYLVMDEADRMLDMGFEPQIRKILQQIRP 290

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL+FSAT   E+Q+++ +FL N  ++ + +    A       +    ++ K+  L+ 
Sbjct: 291 DRQTLMFSATWPKEVQRLAGDFLNNFAQVNIGSTELAANHNVKQIIEVCTEFEKRGKLIG 350

Query: 237 QL-LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L L S D  K  IIF + K+   ++   L + G+   AIHG+  Q+ R  +L+ FK G 
Sbjct: 351 HLELISADNGKV-IIFTSTKRVADDITKFLRQDGWPALAIHGDKQQQERDWVLAEFKSGR 409

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+ +A+RGLD+ D+ +V N+D P   E+Y+H+IGRTGRAGR G A+T    E+ K
Sbjct: 410 SPIMVATAVASRGLDVKDISYVINYDFPTNTEDYVHQIGRTGRAGRTGTAYTYFTPENSK 469


>gi|294666446|ref|ZP_06731689.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292603752|gb|EFF47160.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 458

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 145/381 (38%), Positives = 213/381 (55%), Gaps = 9/381 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ L LSP +   +   GY   TPIQ +++P +LQ  DV   A TG+GKTA+F L +L 
Sbjct: 3   EFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+    R +    L+L PTRELA QV     +      N+ + +L GG+P   Q   LE
Sbjct: 63  KLDPALTRAQ---ALVLCPTRELADQVGKQLRRLATGIPNMKLVVLTGGMPLGPQLASLE 119

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I S     RQ
Sbjct: 120 AHDPQVVVGTPGRIQELARKLALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT  D ++ ++   L+ P  I V    S  E I+  F      Y +K A+   LL
Sbjct: 180 SLLFSATFPDSIRTLARELLKEPVEITVEGADSAPE-IDQQFFEVDPTYRQK-AVAGLLL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +     ++ ++FCN +K V  +  SL++ GFS  A+HG+++QR R ++L  F   +  ++
Sbjct: 238 RFNP--ESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+HG A +LVA  +     A
Sbjct: 296 VASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARAQA 355

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           +E    + + W    L++  P
Sbjct: 356 LETEQGQPLKWSRAPLATARP 376


>gi|113970779|ref|YP_734572.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113885463|gb|ABI39515.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 449

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 208/370 (56%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L  +++ ++   G   PT IQ + +P+ L   D+   ++TG+GKT +F+LP L
Sbjct: 1   MQFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   RA   R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRVISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            +    ++ TPGRI DH  +  L +N +E+LV+DEADRMLD+GF P ++ I +     R 
Sbjct: 121 AKEPHFIVATPGRIADHLEQKNLFLNGLELLVLDEADRMLDLGFAPQLKAINAAADHKRR 180

Query: 179 QTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   E+ +++   L+NP  + +    +  + I +  ++  +  +  K ALL 
Sbjct: 181 QTLMFSATLDHSEINEIAAALLKNPSHVAIGAAHTEHQDITQRIYLCDHLDH--KEALLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL S +T K  IIF   + +   L   L  QGF+  A+ G + Q +R +I+  F  G  
Sbjct: 239 RLL-SDETHKQVIIFTATRADTERLASKLSAQGFATAALSGELKQAARNQIMDQFARGQQ 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +
Sbjct: 298 QILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDN 357

Query: 357 IDAIEKLIEK 366
              ++  + K
Sbjct: 358 FKKVQLFLRK 367


>gi|238750653|ref|ZP_04612152.1| ATP-dependent RNA helicase rhlB [Yersinia rohdei ATCC 43380]
 gi|238711043|gb|EEQ03262.1| ATP-dependent RNA helicase rhlB [Yersinia rohdei ATCC 43380]
          Length = 428

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 150/412 (36%), Positives = 229/412 (55%), Gaps = 16/412 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P V+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPLVIEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY 70

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     E+GR +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 71  LLSHPAEEGR-QTNQPRALIMAPTRELAVQIHSDAESLSQITGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV 189

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R  +LFSAT++  +++++   + N + +EV     T   I+      Y    +K  LL
Sbjct: 190 EKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELF--YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL +F +G 
Sbjct: 248 QTLIE-EEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKK--VDWLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           ++ AIE        V   N D  L+ L  P   +     N  R+N+  P++S
Sbjct: 367 NLPAIETYTGHSIPVSKYNSDALLTDLPAPKRLVRTRTGNGPRRNSA-PRRS 417


>gi|313807189|gb|EFS45682.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA2]
 gi|313819383|gb|EFS57097.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA2]
 gi|313820647|gb|EFS58361.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA1]
 gi|313825517|gb|EFS63231.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA1]
 gi|314924891|gb|EFS88722.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA3]
 gi|314978145|gb|EFT22239.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA2]
 gi|314986302|gb|EFT30394.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA2]
 gi|315088606|gb|EFT60582.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA1]
          Length = 564

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 146/398 (36%), Positives = 224/398 (56%), Gaps = 24/398 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L  
Sbjct: 55  FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 114

Query: 63  L----EKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    ++G   +     P+ L++ PTRELA QV+ +           V  + GG+ +E+Q
Sbjct: 115 ITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQ 174

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G DV++ TPGR+LD   R  L +++  I+V+DEAD MLD+GF+P ++N+    P
Sbjct: 175 IDALKAGVDVVVGTPGRLLDLSQRKDLDLSHERIVVLDEADEMLDLGFLPDVENLIGRTP 234

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYAQYSKKC 232
            +RQT+LFSATM   +  ++ + L+ P  +     +T ++  +T +  +    A    K 
Sbjct: 235 ASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY---QAHPLDKI 291

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            ++ ++LQ+ D  K  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+
Sbjct: 292 EIIGRILQANDVEKV-IIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFR 350

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   
Sbjct: 351 HGEATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWA 410

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           D+       KLI K    LN +LS    P+E    + H
Sbjct: 411 DVTRW----KLINKA---LNLELSE---PVETYSTSPH 438


>gi|83766036|dbj|BAE56179.1| unnamed protein product [Aspergillus oryzae]
          Length = 856

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 139/359 (38%), Positives = 203/359 (56%), Gaps = 3/359 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS  ++  +    +  PTPIQ KTIP+ L   D+ G A TG+GKTA+FV+P+L  
Sbjct: 340 FQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILER 399

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++ 
Sbjct: 400 LLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKR 459

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 460 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTM 519

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMTD + K+    L  P R+ V++  +T+  +   FV     +  K+   L  L +
Sbjct: 520 LFSATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLIQEFVRLRPGREDKRLGYLLHLCK 579

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  I+F  QKK    +  +    G     +HG++ Q  R++ + NF+EG +  ++
Sbjct: 580 EVYTGRV-IVFFRQKKEAHRVRIAFGLLGLKAAELHGSMSQEQRIRSVENFREGKVSFLL 638

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           A+DLAARGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + A
Sbjct: 639 ATDLAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKA 697


>gi|262274927|ref|ZP_06052738.1| ATP-dependent RNA helicase SrmB [Grimontia hollisae CIP 101886]
 gi|262221490|gb|EEY72804.1| ATP-dependent RNA helicase SrmB [Grimontia hollisae CIP 101886]
          Length = 413

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 208/368 (56%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA+L L P+++ A+ D G+ +PT IQ   IP  +   D+   A TGTGKTA+FVLP+L  
Sbjct: 4   FAELELDPQLLQALDDMGFERPTAIQAGVIPHGMDGRDILASAPTGTGKTAAFVLPLLQH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++  R +    R LIL PTRELA Q+AD      K   L +  + GGI ++   + L +
Sbjct: 64  LIDFPRQKPGPARALILTPTRELAIQIADQARALAKYTGLKIITITGGISYQEHAEILGK 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR++++    +     IE LV+DEADRMLDMGF P +  ++S   + +Q++
Sbjct: 124 TQDIVVATPGRLMEYVEAERFDCRAIESLVLDEADRMLDMGFGPAVDRLSSECRWRKQSM 183

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+    ++   +  L +P  +E   P    + I   +       + K ALL+ +L 
Sbjct: 184 LFSATLEGRGIEGFKKTLLTDPVEVEAEPPRRERKKITQWYYRC-DDMTHKNALLKSILT 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   K  IIF   ++ +  L   L  +      + G + Q  R   +  F  G I +++
Sbjct: 243 EQ--AKRAIIFVKTRERLAALREYLTAEKIKCAWLQGEMPQAKRTYAIERFTRGEINVLL 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+PD+ HV NFD+P +A+ Y+HRIGRT RAG+ G A +LV   D   +D I
Sbjct: 301 ATDVAARGIDVPDIDHVINFDLPRKADVYLHRIGRTARAGKKGNAISLVEAHDQPMMDRI 360

Query: 361 EKLIEKKV 368
            + +++ V
Sbjct: 361 CRYMKEDV 368


>gi|158294546|ref|XP_315671.4| AGAP005652-PA [Anopheles gambiae str. PEST]
 gi|157015613|gb|EAA11703.5| AGAP005652-PA [Anopheles gambiae str. PEST]
          Length = 728

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 141/389 (36%), Positives = 219/389 (56%), Gaps = 13/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F D GL   ++  +   G+ KPT IQ + +P+ L   D+ GIAQTG+GKT ++V+P L
Sbjct: 111 MEFEDGGLPVYIMEELKRQGFAKPTAIQAQGMPIALSGRDMVGIAQTGSGKTLAYVVPSL 170

Query: 61  TILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             ++  +A +R    P  LIL PTRELA Q+      +G   +     + GG P   Q +
Sbjct: 171 VHIQH-QATIRRGDGPIALILAPTRELAQQIQQVATDFGSRVSANNTCVFGGAPKGPQIR 229

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LERGA+++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   
Sbjct: 230 DLERGAEIVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIMGQIRPD 289

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKC 232
           RQ L++SAT   E++ ++E FL +  +I + + + +A     + ++ C    Y +  K  
Sbjct: 290 RQVLMWSATWPKEVRNLAEEFLADYIQINIGSLNLSANHNILQIVDVC--EDYEKDQKLM 347

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL ++    DT    IIF   K+ V ++   + + G+   AIHG+  Q+ R  +LS F+
Sbjct: 348 KLLTEISAEPDTKT--IIFVETKRRVDDITRIVNRNGWRAVAIHGDKSQQERDYVLSTFR 405

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    
Sbjct: 406 NGRQGILVATDVAARGLDVEDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTNS 465

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           +    + +  ++ +    +N  L  L  P
Sbjct: 466 NANKANDLINVLREANQVINPRLVELAKP 494


>gi|300937578|ref|ZP_07152392.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
 gi|300457386|gb|EFK20879.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
          Length = 457

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 220/377 (58%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ + +LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNMLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAITAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W    ++S   PLE
Sbjct: 363 KLNWQTPPVNSSIVPLE 379


>gi|225468923|ref|XP_002273212.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 470

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 143/372 (38%), Positives = 219/372 (58%), Gaps = 17/372 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+  ++V A  + G+  P+ IQ + IP  L+  D+ G+AQTG+GKT +F LP+L  
Sbjct: 45  FKDLGICEQLVEACENLGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPIL-- 102

Query: 63  LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +A +  P+ L   +L PTRELA Q+A+ FE  G    L  A+L+GG+    Q   L
Sbjct: 103 ----QALLDTPQVLFACVLSPTRELAIQIAEQFEALGSGIGLKCAVLVGGVDHTQQAIAL 158

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +++ TPGR++DH +  K   +  ++ LV+DEADR+L+  F   I  I S++P  R
Sbjct: 159 AKRPHIVVGTPGRLMDHLSNTKGFSLRTMKYLVLDEADRLLNDDFEKAIDEILSVIPRER 218

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +T LFSATMT +++K+    L+NP +IEV +  ST +T++  +    A+Y K+C L+  L
Sbjct: 219 KTYLFSATMTKKVRKLQRACLRNPVKIEVASKYSTVDTLKQQYRFVPAKY-KECYLVYIL 277

Query: 239 --LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L    TM    +F         L   L   G     I G++ Q  R+  L+ FK G  
Sbjct: 278 TELSGSTTM----VFTRTCDATRLLALLLRNLGLRAIPISGHMSQAKRLGALNKFKAGEC 333

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++ +D+A+RGLDIP V  V N+D+P+ +++YIHR+GRT RAGR G A +LV + +++ 
Sbjct: 334 NILICTDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEW 393

Query: 357 IDAIEKLIEKKV 368
              IEKLI KK+
Sbjct: 394 YIQIEKLIGKKL 405


>gi|158298749|ref|XP_318913.4| AGAP009808-PA [Anopheles gambiae str. PEST]
 gi|157014035|gb|EAA14161.4| AGAP009808-PA [Anopheles gambiae str. PEST]
          Length = 510

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 134/367 (36%), Positives = 211/367 (57%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + DLGL   +  A     +  P+ IQ + IPL LQ  D+ G+A+TG+GKT +F LP+L  
Sbjct: 58  WEDLGLIDTLCTACRGLKWKAPSKIQREAIPLALQGKDIIGLAETGSGKTGAFALPILQA 117

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     R      ++L PTRELA Q+++ FE  G    +   +++GG+    Q  +L R 
Sbjct: 118 LLDNPQRYF---AVVLTPTRELAYQISEQFEALGATIGVKCCVIVGGMDLVTQAIQLARK 174

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             ++I TPGR++DH    K   +  I  LV+DEADR+L+M F   +  I  ++P  R+T 
Sbjct: 175 PHIIIATPGRLVDHLENTKGFSLKAIRYLVMDEADRILNMDFEEEVNKILKVMPRERRTF 234

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT +++K+    L++P ++EV++   T E +   ++   A+Y K   L+  L  +
Sbjct: 235 LFSATMTKKVKKLERASLRDPVKVEVSSKYQTVEKLLQYYLFIPARY-KNVYLVHVL--N 291

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK    Q++++
Sbjct: 292 ELAGNSFMIFCSTCNNTVRTALMLRALGLAAVPLHGQMTQNKRLAALNKFKSQARQILIS 351

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDIP V  V N D+P  +++YIHR+GRT RAGR G+A T V + D++    IE
Sbjct: 352 TDVASRGLDIPHVDVVLNLDIPMHSKDYIHRVGRTARAGRAGQAITFVTQYDVELYQRIE 411

Query: 362 KLIEKKV 368
            L+ KK+
Sbjct: 412 HLLGKKL 418


>gi|295662382|ref|XP_002791745.1| ATP-dependent RNA helicase DBP2 [Paracoccidioides brasiliensis
           Pb01]
 gi|226279871|gb|EEH35437.1| ATP-dependent RNA helicase DBP2 [Paracoccidioides brasiliensis
           Pb01]
          Length = 547

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 135/374 (36%), Positives = 211/374 (56%), Gaps = 14/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ +PT IQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 131 FDEAGFPQYVMTEVKAQGFARPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 190

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 191 INAQPLLAPGDG----PIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQI 246

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 247 RDLTRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 306

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT ++SAT   ++++++++FL +  ++ + +   +A       V   +++ K+  + +
Sbjct: 307 DRQTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRERMAK 366

Query: 237 QLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            L +  D  KN   +IF   K+   ++   L + G+   +IHG+  Q  R  +L+ FK G
Sbjct: 367 HLERIMDD-KNAKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTG 425

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A TL   ++ 
Sbjct: 426 KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNA 485

Query: 355 KHI-DAIEKLIEKK 367
           K   D +  L E K
Sbjct: 486 KQARDLVAILNESK 499


>gi|254526904|ref|ZP_05138956.1| DbpA RNA binding domain family protein [Prochlorococcus marinus
           str. MIT 9202]
 gi|221538328|gb|EEE40781.1| DbpA RNA binding domain family protein [Prochlorococcus marinus
           str. MIT 9202]
          Length = 593

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 135/371 (36%), Positives = 212/371 (57%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D G +  ++ ++++ GY  PTPIQ   IP ++   D+ G AQTGTGKTA+F LP++  
Sbjct: 53  FLDFGFNQSILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEK 112

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L   +      + L++ PTRELA QVA++F+ Y     N     + GG  +  Q   L+R
Sbjct: 113 LTDNKEL--NAKVLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKR 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DV++ TPGRI+DH  +G   + +I  LV+DEAD ML+MGF+  I+ I   +P  +Q +
Sbjct: 171 KVDVVVGTPGRIMDHIRQGTFKIKHINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMV 230

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++ +++ +L +P  I + +     + I   F+  Y Q   K   L+++L+ 
Sbjct: 231 LFSATMPSEIKNIAKKYLNDPAEILIKSVKKETQLISQKFL--YVQRHHKLDALKRILEL 288

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  IIF   K    ++  +LE  G +V  ++G+I Q  R   +   K+G I ++VA
Sbjct: 289 NN--EGVIIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVA 346

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D P   E Y HRIGRTGRAGR G+A   V + +   +  +E
Sbjct: 347 TDVAARGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLE 406

Query: 362 KLIEKKVDWLN 372
                K++ +N
Sbjct: 407 NSTRTKIEEIN 417


>gi|255711296|ref|XP_002551931.1| KLTH0B03278p [Lachancea thermotolerans]
 gi|238933309|emb|CAR21493.1| KLTH0B03278p [Lachancea thermotolerans]
          Length = 739

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 134/354 (37%), Positives = 208/354 (58%), Gaps = 4/354 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L LS  V+  +    YVKP+PIQ  TIP+ L   D+   A TG+GKTA++++P++ 
Sbjct: 224 NFNSLSLSRPVLKGLGALNYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAYMIPIIE 283

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L    A++   R ++L PTRELA QV+D   K  K  N ++  L +GG+    Q + L 
Sbjct: 284 RLLYKPAQIASTRVIVLTPTRELAIQVSDVGAKLAKFVNGISFGLAVGGLNLRQQEQTLR 343

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D++I TPGR++DH  N     ++++EILVIDEADRML+ GF   +  I SL+P  RQ
Sbjct: 344 SRPDIVIATPGRLIDHIRNSASFNVDSVEILVIDEADRMLEEGFQDELNEIMSLIPSKRQ 403

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  ++ ++    L+ P +I ++ P   A  +   FV    +   K ALL  L+
Sbjct: 404 TLLFSATMNSKINQLISLSLKKPVKIMIDPPRQAAAKLTQEFVRVRKRDELKPALLFHLI 463

Query: 240 QSQD--TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  D  + K  ++F  +K+    L   L   G  V  +HG++ Q  R++ ++ FK   + 
Sbjct: 464 RKLDDLSQKRVVVFVARKEVAHKLRIILGLLGMKVAELHGSLSQEQRLQAVNGFKSLQVP 523

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +++ +DLA+RGLDIP +  V N+D+P   + Y+HR+GRT RAGR G++ + V +
Sbjct: 524 VLICTDLASRGLDIPKIEFVINYDMPKTYDIYLHRVGRTARAGREGRSISFVGE 577


>gi|301025571|ref|ZP_07189094.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
 gi|300395891|gb|EFJ79429.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
          Length = 457

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 142/383 (37%), Positives = 221/383 (57%), Gaps = 9/383 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L + P      LD  GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLDELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++   A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+
Sbjct: 64  QID---ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGLQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL 
Sbjct: 181 LLFSATWPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W    ++S   PLE
Sbjct: 357 SDMLQIKLNWQTPPVNSSIVPLE 379


>gi|331682838|ref|ZP_08383457.1| ATP-independent RNA helicase DbpA [Escherichia coli H299]
 gi|331080469|gb|EGI51648.1| ATP-independent RNA helicase DbpA [Escherichia coli H299]
          Length = 457

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 220/377 (58%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPTILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRMLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+  ++C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W    ++S   PLE
Sbjct: 363 KLNWQTPPVNSSIVPLE 379


>gi|291438689|ref|ZP_06578079.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291341584|gb|EFE68540.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 689

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 133/349 (38%), Positives = 190/349 (54%), Gaps = 5/349 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L
Sbjct: 105 LTFADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTL 164

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  GR     PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LE
Sbjct: 165 ATLAGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALE 224

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+ D  NRG   + N++I V+DEAD+M D+GF+P +  +   VP   Q 
Sbjct: 225 RGVDILVATPGRLRDIINRGACSLENVQIAVLDEADQMSDLGFLPEVTELLDQVPAGGQR 284

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM +E++ + + +L +P   EV+       T+ H  +       K  A +   + 
Sbjct: 285 MLFSATMENEIKTLVDRYLNDPVSHEVDAAQGAVTTMSHHILVV---KPKDKAPVTAAIA 341

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+      IIF   +     +   L   G    A+HG + Q +R + L++FK+G + ++V
Sbjct: 342 SRKGRT--IIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLV 399

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           A+D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L 
Sbjct: 400 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLA 448


>gi|114778501|ref|ZP_01453345.1| putative ATP-dependent RNA helicase DbpA [Mariprofundus
           ferrooxydans PV-1]
 gi|114551226|gb|EAU53785.1| putative ATP-dependent RNA helicase DbpA [Mariprofundus
           ferrooxydans PV-1]
          Length = 459

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 138/347 (39%), Positives = 204/347 (58%), Gaps = 7/347 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P ++  +   GY   TPIQ +++P +L   DV    QTG+GKTA+F L +L  
Sbjct: 6   FSTLSLRPDLLDNLATLGYEAMTPIQQQSLPDILAGRDVIAQGQTGSGKTAAFGLGLLQK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+  +  V+   +L+L PTRELA QVA    K  +   N+ V  L GG+PF  Q   LE 
Sbjct: 66  LDITKPHVQ---SLVLCPTRELADQVAKEIRKLARKLANIKVLTLCGGMPFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI DH NRG L ++ +  LV+DEADRML+MGF   + +I   +P  RQTL
Sbjct: 123 GAHIIVGTPGRIEDHMNRGTLKLDRVTTLVLDEADRMLEMGFQSVLDSIIGKIPKQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D++Q V++  +  P  + V +    + +IE  F        +  AL   LLQ 
Sbjct: 183 LFSATFPDQIQSVAKRIMDKPVMVAVASTHDDS-SIEQHFYKVSDDEQRMTALRLLLLQH 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + ++FCN K     +  +L   GFS  A++G+++QR R +++  F   +I ++VA
Sbjct: 242 KPV--STLVFCNTKAETEAVAKTLVWHGFSALALNGDLEQRDRDQVMVRFANKSISVLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +D+AARGLDI  +  V N+ + +  E ++HRIGRTGRAG  G A +L
Sbjct: 300 TDVAARGLDIDALDAVINYHIAHDPEVHVHRIGRTGRAGSKGVACSL 346


>gi|54024485|ref|YP_118727.1| putative RNA helicase [Nocardia farcinica IFM 10152]
 gi|54015993|dbj|BAD57363.1| putative RNA helicase [Nocardia farcinica IFM 10152]
          Length = 518

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 138/390 (35%), Positives = 212/390 (54%), Gaps = 9/390 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+LGL   +V A+   G   P PIQ  T+P  L   DV G   TG+GKT +F LPML
Sbjct: 30  VTFAELGLPAVLVQALRRNGIDAPFPIQAATVPDALAGKDVLGRGPTGSGKTLAFGLPML 89

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L    A  R PR L+L PTRELAAQ+    ++      L VA ++GG P + Q  +L 
Sbjct: 90  VRLAGNAAAPRRPRGLVLVPTRELAAQIERALDEPALALGLRVASVVGGAPIKRQADRLA 149

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+LI TPGR+ D   +G   ++++ I  +DEAD M DMGF+P +  +    P   Q 
Sbjct: 150 RGVDLLIATPGRLSDLIAQGAAALDDVSITALDEADHMADMGFLPQVTRLLDRTPADGQR 209

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  E+ K+ + +L+NP       PS++  T+ H  +  Y + + K A++ ++  
Sbjct: 210 LLFSATLDGEVDKLVKRYLRNPVTHSTAPPSASVATMSHHLL--YVRKADKRAVIAEIAA 267

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      I+F   K     L   L   G +  A+HG   Q +R + L+ F +G++ ++V
Sbjct: 268 REGLT---ILFVRTKHGADRLAKQLRAAGIAAGALHGGKAQNNRTRTLAAFADGSVPVLV 324

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ +  +  V + D P   + Y+HR GRT RAG  G   TLV +++      +
Sbjct: 325 TTDVAARGIHVDGISLVVHADPPAEPKAYLHRAGRTARAGEDGVVVTLVTEDERAD---V 381

Query: 361 EKLIEKK-VDWLNGDLSSLNPPLEKIDIAQ 389
           EK+  K  VD +  +++  +P L +I  A+
Sbjct: 382 EKMTRKAGVDVVGVNVTPGHPALREITGAR 411


>gi|289428099|ref|ZP_06429802.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
           J165]
 gi|289158699|gb|EFD06900.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
           J165]
 gi|313822547|gb|EFS60261.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2]
 gi|314960461|gb|EFT04563.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2]
 gi|314989611|gb|EFT33702.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3]
 gi|315085333|gb|EFT57309.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3]
 gi|327327119|gb|EGE68898.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL096PA3]
 gi|327443743|gb|EGE90397.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2]
 gi|328754844|gb|EGF68460.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1]
          Length = 560

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 146/398 (36%), Positives = 224/398 (56%), Gaps = 24/398 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L  
Sbjct: 51  FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 110

Query: 63  L----EKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    ++G   +     P+ L++ PTRELA QV+ +           V  + GG+ +E+Q
Sbjct: 111 ITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQ 170

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G DV++ TPGR+LD   R  L +++  I+V+DEAD MLD+GF+P ++N+    P
Sbjct: 171 IDALKAGVDVVVGTPGRLLDLSQRKDLDLSHERIVVLDEADEMLDLGFLPDVENLIGRTP 230

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYAQYSKKC 232
            +RQT+LFSATM   +  ++ + L+ P  +     +T ++  +T +  +    A    K 
Sbjct: 231 ASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY---QAHPLDKI 287

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            ++ ++LQ+ D  K  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+
Sbjct: 288 EIIGRILQANDVEKV-IIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFR 346

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   
Sbjct: 347 HGEATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWA 406

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           D+       KLI K    LN +LS    P+E    + H
Sbjct: 407 DVTRW----KLINKA---LNLELSE---PVETYSTSPH 434


>gi|226288804|gb|EEH44316.1| ATP-dependent rRNA helicase RRP3 [Paracoccidioides brasiliensis
           Pb18]
          Length = 482

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 212/368 (57%), Gaps = 14/368 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+   +  A    GY  PTPIQ + IPL LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 58  FKDLGVIDSLCEACEALGYKTPTPIQTEAIPLALQGRDLIGLAETGSGKTAAFALPIL-- 115

Query: 63  LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +A +  P++L   +L PTRELA Q+++ FE  G   ++  A+++GG+    Q   L
Sbjct: 116 ----QALMDKPQSLFGLVLAPTRELAYQISEAFEALGSLISVRCAVIVGGMDMVPQAIAL 171

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +++ TPGR+LDH    K   + N++ LV+DEADR+LD+ F P +  I  ++P  R
Sbjct: 172 GKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRER 231

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQ 237
           +T LFSATM+ +++ +    L NP R+ +++    T  T+   F+    +Y  K   L  
Sbjct: 232 RTYLFSATMSSKVESLQRASLSNPLRVSISSSKYQTVSTLLQTFLFIPHKY--KDIYLVY 289

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL ++   ++ IIF         L   L   GF    +HG + Q  R+  L  F+  +  
Sbjct: 290 LL-NEFAGQSAIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSYRLGALGKFRSRSRD 348

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIP V  V NFD+P  ++ YIHR+GRT RAG+ G AF+ V + D++  
Sbjct: 349 ILVATDVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFSFVTQYDLEVW 408

Query: 358 DAIEKLIE 365
             IE  ++
Sbjct: 409 LRIENALD 416


>gi|159469610|ref|XP_001692956.1| pre-mRNA-splicing ATP-dependent RNA helicase [Chlamydomonas
           reinhardtii]
 gi|158277758|gb|EDP03525.1| pre-mRNA-splicing ATP-dependent RNA helicase [Chlamydomonas
           reinhardtii]
          Length = 571

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 134/386 (34%), Positives = 215/386 (55%), Gaps = 27/386 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + GL   ++ A+   GY KP+PIQ+  IPL L++ DV GIA+TG+GKTA+FVLPML  
Sbjct: 154 WEESGLPSLLLKAIEKVGYKKPSPIQMAAIPLGLKQRDVIGIAETGSGKTAAFVLPMLAY 213

Query: 63  LEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + +            P  ++L PTRELA Q+ +   K        V  ++GG   E Q  
Sbjct: 214 IMRQPPMNEENEADGPYAVVLAPTRELAQQIEEETHKLAHYTGYRVTSVVGGQSIEEQGT 273

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL +G +++I TPGR+LD  +R   ++N    +V+DEADRM+D+GF P +  +   +P +
Sbjct: 274 KLRKGCEIVIATPGRLLDCIDRHYAVLNQCNYVVLDEADRMIDLGFEPQVIGVLDAMPKS 333

Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EH 219
                            R T +FSATM   ++++++ +L+ P  + + +     + + + 
Sbjct: 334 TLKPDEEGAVLEENRTYRTTYMFSATMPPAVERLAKKYLRRPVVVVIGSAGRVTDNVTQR 393

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
            FV    + ++K  LL+Q L + D  K  I+F N ++   N+   +++ G+    +HG  
Sbjct: 394 VFVV---KENEKGRLLEQELNNVDE-KRVIVFVNTQRQCDNVHRHMDELGYHCTILHGGK 449

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q  R   +  F++GT  +++A+D+A RG+D+PDV  V N+D+P   ENY HRIGRTGRA
Sbjct: 450 TQDQREAGIKGFRDGTYNVLIATDVAGRGIDVPDVALVVNYDMPTNIENYTHRIGRTGRA 509

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIE 365
           GR G A T +   D      ++KL+E
Sbjct: 510 GRKGIAVTFLTLGDTGVFFDLKKLLE 535


>gi|156093649|ref|XP_001612863.1| DEAD/DEAH box helicase [Plasmodium vivax SaI-1]
 gi|148801737|gb|EDL43136.1| DEAD/DEAH box helicase, putative [Plasmodium vivax]
          Length = 539

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 131/373 (35%), Positives = 219/373 (58%), Gaps = 18/373 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L +  +++ ++ + G+ KPT IQ K +P   Q+ D+ G+++TG+GKTA F++P   I
Sbjct: 134 FRELNICEEILQSIEELGWKKPTAIQRKMLPFAFQKRDIIGLSETGSGKTACFIIP---I 190

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++ R + +    L++ PTREL  Q+A +F+  G N  + +  + GG+    Q+  L + 
Sbjct: 191 LQELREKRQSFFALVISPTRELCIQIAQHFQALGSNLLINICTIFGGVDIVTQSLNLAKK 250

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            ++++ TPGRILDH N  K   + N++ LV DEAD++L + F   I  +  ++P  R T 
Sbjct: 251 PNIIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSLDFEASINKLLLILPEKRITF 310

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLL 239
           LFSATMT  + K+ +  L+NP  +EV++  STA T+   + F+    +Y+  C+L     
Sbjct: 311 LFSATMTKSVAKLKKASLKNPITVEVSSKYSTASTLIENYIFIPLKYKYTYLCSLCFHF- 369

Query: 240 QSQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               + ++ IIF   C   + +   C +L   G     +HG + Q  R+  L++FK    
Sbjct: 370 ----SSRSIIIFANTCATAQKINFFCRNL---GLKSICLHGKLTQNQRLSSLNSFKSKRY 422

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++++ + ARGLD+ D+  V NFD+ +  E YIHR+GRT RAGR GK+ T V + D++ 
Sbjct: 423 NILISTQVGARGLDLKDIRIVINFDLCSCKE-YIHRVGRTARAGRTGKSITFVTQYDVES 481

Query: 357 IDAIEKLIEKKVD 369
             AIEK++ KK+D
Sbjct: 482 FLAIEKMLNKKID 494


>gi|119946798|ref|YP_944478.1| ATP-dependent RNA helicase RhlB [Psychromonas ingrahamii 37]
 gi|189040034|sp|A1SZG4|RHLB_PSYIN RecName: Full=ATP-dependent RNA helicase rhlB
 gi|119865402|gb|ABM04879.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 418

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 153/407 (37%), Positives = 227/407 (55%), Gaps = 18/407 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FADL L   ++  +   GY   TPIQ  ++P+ L   D+ G AQTGTGKT +F LP    
Sbjct: 11  FADLPLEKSLISGLTSQGYEYCTPIQALSLPITLTGKDIAGQAQTGTGKTLAF-LPAVFH 69

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +LT  +    R   PR +IL PTRELA Q+  +        NL + L  GG   E Q  
Sbjct: 70  HLLTNAQPENRRKNQPRAIILAPTRELAIQIHKDAMVLASMSNLRLGLAYGGEKVEIQRT 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           KLE+G D+LI T GR +D   +G + M +I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLEKGVDILIGTTGRTIDFVKQGVIDMGSIQSVVLDEADRMFDLGFIKDIRYLFRRMPEA 189

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234
            +R  +LFSAT++ ++Q+++   + +P+ I++     T+  I E  F   Y     K  L
Sbjct: 190 KSRLNMLFSATLSHKVQELAFEHMNDPESIQIEPEVMTSVNITEELF---YPSNQDKILL 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L++ +D     I+F N K     +   L   G     + G++ Q  R+KIL  F +G
Sbjct: 247 LLSLIE-EDWPDKAIVFANTKHTCEKVWGYLAGDGLRTGLLTGDVPQNKRLKILQQFTDG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I ++VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG  G A +   ++ +
Sbjct: 306 EIDILVATDVAARGLHIPKVSHVFNFDLPDDCEDYVHRIGRTGRAGEKGLAISFACEKYV 365

Query: 355 KHIDAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN 397
            ++ AIE+ I+  +     D    L SL P ++      H ++RK+N
Sbjct: 366 FNLPAIEEYIKHPIPCSEYDKNAMLDSL-PVMKVTKYKAHPNSRKDN 411


>gi|325928093|ref|ZP_08189306.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
 gi|325541591|gb|EGD13120.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
          Length = 458

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 145/381 (38%), Positives = 212/381 (55%), Gaps = 9/381 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ L LSP +   +   GY   TPIQ +++P +LQ  DV   A TG+GKTA+F L +L 
Sbjct: 3   EFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+    R +    L+L PTRELA QV     K      N+ + +L GG+P   Q   LE
Sbjct: 63  KLDPAVTRAQ---ALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 119

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I       RQ
Sbjct: 120 AHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAGRCDKHRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT  D ++ ++   L+ P  I V    S  E I+  F      Y +K A+   LL
Sbjct: 180 SLLFSATFPDSIRTLARELLKEPVEITVEGADSAPE-IDQQFFEVDPTYRQK-AVAGLLL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +     ++ ++FCN +K V  +  SL++ GFS  A+HG+++QR R ++L  F   +  ++
Sbjct: 238 RFNP--ESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+HG A +LVA  +     A
Sbjct: 296 VASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARAQA 355

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           +E    + + W    L++  P
Sbjct: 356 LEAEQGQPLKWSRAPLATARP 376


>gi|195453762|ref|XP_002073931.1| GK14378 [Drosophila willistoni]
 gi|194170016|gb|EDW84917.1| GK14378 [Drosophila willistoni]
          Length = 683

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 132/360 (36%), Positives = 203/360 (56%), Gaps = 4/360 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE---KG 66
           P ++  +   G+ KP+PIQ +  P++LQ  D+ GIAQTGTGKT +F+LP +   E     
Sbjct: 271 PDLLGEIQKQGFSKPSPIQAQAWPILLQGLDMIGIAQTGTGKTLAFLLPGMIHTEYQSTP 330

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +      L+L PTRELA Q+     KY    N+    + GG   + Q   +ERGA+++
Sbjct: 331 RGQRGGANVLVLAPTRELALQIEMEVNKYSFR-NMRAVCVYGGGCRKMQISDVERGAEII 389

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           ICTPGR+ D      + ++ I  LV+DEADRMLDMGF P I+ I   +P  RQT++ SAT
Sbjct: 390 ICTPGRLNDLVQAKVIDVSTITYLVLDEADRMLDMGFEPQIRKILLDIPPNRQTIMTSAT 449

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
               +++++ +++ NP  + V +    A       V       +K   ++  +++     
Sbjct: 450 WPPGVRRLANSYMTNPIEVCVGSLDLAATHSVKQIVQFLEDDKEKYRTIKSFIKNMGESD 509

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             IIFC +K    +L   L   GF    IHGN DQ  R + +++ K G + ++VA+D+A+
Sbjct: 510 KIIIFCGRKARADDLSSDLTLDGFMTQCIHGNRDQNDREQAIADIKSGVVHILVATDVAS 569

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + + + +ED      + K++E+
Sbjct: 570 RGLDIEDISHVINYDFPRNIEEYVHRVGRTGRAGRKGTSISFITREDWGMAHELIKILEE 629


>gi|188588593|ref|YP_001920789.1| cold-shock deAd box protein a [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188498874|gb|ACD52010.1| cold-shock deAd box protein a [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 367

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 136/363 (37%), Positives = 211/363 (58%), Gaps = 10/363 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LG++  +V  +   G   PT IQ ++IP +L   DV G A+TGTGKT +F+LP  
Sbjct: 1   MNFKSLGINENIVNILNKNGIKTPTAIQEESIPKILSGKDVIGEAKTGTGKTLAFLLP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I +         + LIL PTRELA Q+ +  +K   N ++ +    GG    +Q KKL+
Sbjct: 59  -IFQNISPDTNGTQVLILSPTRELAIQITEETKKLNVNNDINILAAYGGKDIGSQLKKLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH +R  + ++ ++ +VIDEAD+ML MGF   I+ I  +     QT
Sbjct: 118 HNVHLVIATPGRLLDHIDRKTIDLSKLKTIVIDEADQMLLMGFKNDIEKIMKVASKKHQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK--CALLQQL 238
           L FSATM  +++K++  ++ +P  I++ +P+   + I+   V T  ++ +   CA LQ  
Sbjct: 178 LCFSATMDSQVKKLAYRYMIDPLFIDIKSPTIAVDKIKQQVVETTDRWKQDSLCATLQ-- 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +D     IIFC  K+    L  +L ++G +   IH ++ Q  R +I+ +F+   IQ 
Sbjct: 236 ---EDNPFMAIIFCRTKRRADVLEIALHQKGLNCQKIHSDVPQAKRERIMKSFRNADIQY 292

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI  V H++N+D P   E+YIHRIGRTGRAG  G     VA +D   ++
Sbjct: 293 LIATDVAARGIDISGVSHIYNYDTPETPESYIHRIGRTGRAGEDGYTCMFVAPKDSSLLN 352

Query: 359 AIE 361
           AIE
Sbjct: 353 AIE 355


>gi|123968740|ref|YP_001009598.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           AS9601]
 gi|123198850|gb|ABM70491.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           AS9601]
          Length = 593

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 135/371 (36%), Positives = 212/371 (57%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D G +  ++ ++++ GY  PTPIQ   IP ++   D+ G AQTGTGKTA+F LP++  
Sbjct: 53  FLDFGFNQSILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEK 112

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L   +      + L++ PTRELA QVA++F+ Y     N     + GG  +  Q   L+R
Sbjct: 113 LTDNKEL--NAKVLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKR 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DV++ TPGRI+DH  +G   + +I  LV+DEAD ML+MGF+  I+ I   +P  +Q +
Sbjct: 171 KVDVVVGTPGRIMDHIRQGTFKIKDINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMV 230

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++ +++ +L +P  I + +     + I   F+  Y Q   K   L+++L+ 
Sbjct: 231 LFSATMPSEIRNIAKKYLNDPAEILIKSVKKETQLISQKFL--YVQRHHKLDALKRILEL 288

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  IIF   K    ++  +LE  G +V  ++G+I Q  R   +   K+G I ++VA
Sbjct: 289 NN--EGVIIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVA 346

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D P   E Y HRIGRTGRAGR G+A   V + +   +  +E
Sbjct: 347 TDVAARGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLE 406

Query: 362 KLIEKKVDWLN 372
                K++ +N
Sbjct: 407 NSTRTKIEEIN 417


>gi|251778083|ref|ZP_04821003.1| cold-shock deAd box protein a [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243082398|gb|EES48288.1| cold-shock deAd box protein a [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 367

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 136/363 (37%), Positives = 211/363 (58%), Gaps = 10/363 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LG++  +V  +   G   PT IQ ++IP +L   DV G A+TGTGKT +F+LP  
Sbjct: 1   MNFKSLGINENIVNILNKNGIKTPTAIQEESIPKILSGKDVIGEAKTGTGKTLAFLLP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I +         + LIL PTRELA Q+ +  +K   N ++ +    GG    +Q KKL+
Sbjct: 59  -IFQNISPDTNGTQVLILSPTRELAIQITEETKKLNVNNDINILAAYGGKDIGSQLKKLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH +R  + ++ ++ +VIDEAD+ML MGF   I+ I  +     QT
Sbjct: 118 HNVHLVIATPGRLLDHIDRKTIDLSKLKTIVIDEADQMLLMGFKNDIEKIMKVASKKHQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK--CALLQQL 238
           L FSATM  +++K++  ++ +P  I++ +P+   + I+   V T  ++ +   CA LQ  
Sbjct: 178 LCFSATMDSQVKKLAYRYMIDPLFIDIKSPTIAVDKIKQQVVETTDRWKQDSLCATLQ-- 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +D     IIFC  K+    L  +L ++G +   IH ++ Q  R +I+ +F+   IQ 
Sbjct: 236 ---EDNPFMAIIFCRTKRRADVLEIALHQKGLNCQKIHSDVPQAKRERIMKSFRNADIQY 292

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI  V H++N+D P   E+YIHRIGRTGRAG  G     VA +D   ++
Sbjct: 293 LIATDVAARGIDISGVSHIYNYDTPETPESYIHRIGRTGRAGEDGYTCMFVAPKDSNLLN 352

Query: 359 AIE 361
           AIE
Sbjct: 353 AIE 355


>gi|320182099|gb|EFW57003.1| ATP-dependent RNA helicase SrmB [Shigella boydii ATCC 9905]
          Length = 444

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 137/356 (38%), Positives = 205/356 (57%), Gaps = 4/356 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73
           A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  +L+  R +   P
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +      D+++ T GR+
Sbjct: 78  RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQ 192
           L +          +E L++DEADRMLDMGF   I++I     + +QTLLFSAT+  D +Q
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
             +E  L++P  +  N PS+      H +         K ALL  LL+  +  ++ I+F 
Sbjct: 198 DFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFV 255

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
            +++ V  L + L + G + C + G + Q  R + +    EG + ++VA+D+AARG+DIP
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           D  HVFNFD+P   + Y+HRIGRT RAGR G A +LV   D   +  + + IE+ +
Sbjct: 316 DASHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371


>gi|312217179|emb|CBX97128.1| similar to pre-mRNA-splicing ATP-dependent RNA helicase prp28
           [Leptosphaeria maculans]
          Length = 815

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 207/377 (54%), Gaps = 26/377 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++++ GL  K++  V   GY +P+ IQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 395 NWSESGLPDKLMRIVEQVGYTEPSAIQRAAIPIALQCRDLIGVAVTGSGKTAAFILPLLV 454

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + +        R   P  L+L PTRELA Q+     K+        A+++GG   E Q+
Sbjct: 455 YISQLPPLSAANRHDGPYALVLAPTRELAQQIEVEARKFAAPLGFNTAVIVGGHSIEEQS 514

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP- 175
            +++ GA+++I TPGR++D   R  L+++    +++DEADRM+DMGF   +  I   +P 
Sbjct: 515 FQMQAGAEIIIATPGRLVDCIERRVLVLSQCTYVIMDEADRMIDMGFEEPVNKILDALPV 574

Query: 176 -------------------FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
                              F RQT++++ATM   +++++  +L+ P  + +       ET
Sbjct: 575 NNEKPDSELAEDANAMKRGFYRQTMMYTATMPTAVERIARKYLRRPAIVTIGNVGEAVET 634

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
           +E        +  +K   LQ++L S++     I+F N K+N   +   ++  GFS   +H
Sbjct: 635 VEQRVEHIQGEERRK-KRLQEILSSEEFRPPIIVFVNIKRNCDAIARDIKHMGFSAVTLH 693

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G+  Q  R   L++ KEG   ++VA+DLA RG+DI DV  V NF++    E+Y HRIGRT
Sbjct: 694 GSKTQEQREAALASLKEGRTDVLVATDLAGRGIDITDVSLVVNFNMATSIESYTHRIGRT 753

Query: 337 GRAGRHGKAFTLVAKED 353
           GRAG+ G A T    ED
Sbjct: 754 GRAGKSGVAITFWGNED 770


>gi|156932881|ref|YP_001436797.1| ATP-dependent RNA helicase SrmB [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156531135|gb|ABU75961.1| hypothetical protein ESA_00682 [Cronobacter sakazakii ATCC BAA-894]
          Length = 444

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 137/354 (38%), Positives = 209/354 (59%), Gaps = 6/354 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ A+ + G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  
Sbjct: 6   FSELELDDSLLDALQEKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVA++  +  K+ +L +A + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAMQVAEHARELAKHTHLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I     + +QTL
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQTL 185

Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVN-TPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LFSAT+  D ++  +E  L+ P  +EV+ TPS+      H +         K ALL  LL
Sbjct: 186 LFSATLEGDAIKDFAERLLEEP--VEVSATPSTRERKKIHQWYYRADNIEHKTALLVHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +  ++ I+F  +++ V  L + L + G + C + G + Q  R + +    +G + ++
Sbjct: 244 KQPEATRS-IVFVRKRERVHELANWLREAGINNCYLEGEMVQVKRNEAIKRLTDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +A+D+AARG+DIPDV HVFN+D+P  A+ Y+HRIGRTGRAGR G A +LV   D
Sbjct: 303 IATDVAARGIDIPDVSHVFNYDMPRTADTYLHRIGRTGRAGRKGTAISLVEAHD 356


>gi|147671861|ref|YP_001214917.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O395]
 gi|146314244|gb|ABQ18784.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
 gi|227014692|gb|ACP10901.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
          Length = 452

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 140/389 (35%), Positives = 212/389 (54%), Gaps = 12/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   + PR LIL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 65  HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            RG   ++ TPGR+ DH +   L +  +E LV+DEADRMLD+GF   ++ I +     R 
Sbjct: 125 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   ++  ++   L  PKRI +   S   + I +H ++  +  +  K ALL 
Sbjct: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDH--KEALLD 242

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L   +  +  IIF   + +   L   L K      A+ GN++Q  R  I+  F+    
Sbjct: 243 RILADAE-YRQVIIFTATRADTDRLTEKLNKNNLKAVALSGNLNQTQRNTIMGQFERAVF 301

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++V +D+A+RGLDIP V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D + 
Sbjct: 302 KILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWES 361

Query: 357 IDAIEKLIEKKVDW-----LNGDLSSLNP 380
              +E  +++++ +     L G    L P
Sbjct: 362 FKRVEAFLQQEIQFEVLAGLEGKFKGLKP 390


>gi|239929077|ref|ZP_04686030.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 428

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 130/343 (37%), Positives = 202/343 (58%), Gaps = 12/343 (3%)

Query: 34  LVLQRHDVCGIAQTGTGKTASFVLPML---TI---LEKGRAR----VRMPRTLILEPTRE 83
           + L   DV G A+TGTGKT  F LP+L   T+   +E GRA+       P+ L++ PTRE
Sbjct: 1   MALSGTDVIGQAKTGTGKTLGFGLPLLERVTVPVDVEAGRAKPEDLTDAPQALVVVPTRE 60

Query: 84  LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           L  QV ++    GK  N+ V  + GG  +E Q + L++G DV++ TPGR+LD   + KL 
Sbjct: 61  LCTQVTNDLLTAGKVRNVRVTAIYGGRAYEPQVEALKKGVDVVVGTPGRLLDLAGQKKLN 120

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           + +++ LV+DEAD MLD+GF+P ++ I +L+P  RQT+LFSATM   +  ++  ++  P 
Sbjct: 121 LAHVKALVLDEADEMLDLGFLPDVEKIINLLPVRRQTMLFSATMPGAVIGLARRYMSQPT 180

Query: 204 RIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLC 262
            I    P     T+ +     Y A    K  ++ ++LQ++      ++FC  K+   +L 
Sbjct: 181 HIRATAPDDEGATVANTKQFVYRAHNMDKPEMVARILQAEG-RGLAMVFCRTKRTAADLA 239

Query: 263 HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322
             L+++GF+  A+HG++ Q +R + L  F+ G + ++V +D+AARG+D+  V HV N+  
Sbjct: 240 DQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQS 299

Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           P   + Y+HRIGRTGRAG  G A TLV  +DI     I K +E
Sbjct: 300 PEEEKTYLHRIGRTGRAGAKGTAITLVDWDDIPRWQLINKALE 342


>gi|300779372|ref|ZP_07089230.1| DEAD/DEAH box family ATP-dependent RNA helicase [Chryseobacterium
           gleum ATCC 35910]
 gi|300504882|gb|EFK36022.1| DEAD/DEAH box family ATP-dependent RNA helicase [Chryseobacterium
           gleum ATCC 35910]
          Length = 562

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 132/363 (36%), Positives = 213/363 (58%), Gaps = 12/363 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61
           F +  LSP ++ A+ + GY  PT IQ +TIP +L    D+  +AQTGTGKTA+F LP+L 
Sbjct: 4   FTETNLSPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLPILD 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +++    ++++   L+L PTREL  Q++    N+ KY K+   T   + GG     Q + 
Sbjct: 64  MIDDTSRKIQL---LVLCPTRELCLQISKDIKNYSKYMKDIKTTA--VYGGSSIVEQMRS 118

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+    +++ TPGR++D  NR  L  + I  LV+DEAD ML MGF   ++ I S  P T+
Sbjct: 119 LKDKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSETPETK 178

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT LFSATM  E++++S+N+L  P RI V + +   + I H +      Y +K   L++L
Sbjct: 179 QTFLFSATMNKEVERISKNYLTKPHRISVGSINEVKKNITHEYYV--VGYRQKKEALKRL 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +    +  IIFC  +     +   L + G++  A+HG++ Q  R  ++  F+   I +
Sbjct: 237 IDANPN-QYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDI 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  + HV +F +P+  E ++HR GRTGRAG+ G +  L+  E+ + + 
Sbjct: 296 LVATDVAARGLDVNSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEESRKLK 355

Query: 359 AIE 361
            I+
Sbjct: 356 QIK 358


>gi|238484285|ref|XP_002373381.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus flavus
           NRRL3357]
 gi|317140428|ref|XP_001818181.2| ATP-dependent RNA helicase drs1 [Aspergillus oryzae RIB40]
 gi|91206589|sp|Q2UQI6|DRS1_ASPOR RecName: Full=ATP-dependent RNA helicase drs1
 gi|220701431|gb|EED57769.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus flavus
           NRRL3357]
          Length = 820

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 139/359 (38%), Positives = 203/359 (56%), Gaps = 3/359 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS  ++  +    +  PTPIQ KTIP+ L   D+ G A TG+GKTA+FV+P+L  
Sbjct: 304 FQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILER 363

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++ 
Sbjct: 364 LLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKR 423

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 424 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTM 483

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMTD + K+    L  P R+ V++  +T+  +   FV     +  K+   L  L +
Sbjct: 484 LFSATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLIQEFVRLRPGREDKRLGYLLHLCK 543

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  I+F  QKK    +  +    G     +HG++ Q  R++ + NF+EG +  ++
Sbjct: 544 EVYTGRV-IVFFRQKKEAHRVRIAFGLLGLKAAELHGSMSQEQRIRSVENFREGKVSFLL 602

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           A+DLAARGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + A
Sbjct: 603 ATDLAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKA 661


>gi|38198641|ref|NP_938179.1| probable ATP-dependent RNA helicase DDX49 [Danio rerio]
 gi|28839770|gb|AAH47834.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Danio rerio]
          Length = 468

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 158/420 (37%), Positives = 230/420 (54%), Gaps = 25/420 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  ++      G  +PT +Q K IP +L   D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    V     L+L PTRELA Q+A+ F   GK   L   +++GG+    Q  +L + 
Sbjct: 64  LSEDPYGVF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSKK 120

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178
             V++ TPGR+ DH      + +N I+ L++DEADR+L+ G   F   ++ I S VP  R
Sbjct: 121 PHVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILSAVPAKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+TD LQ++    +  P   E  +   T E ++  F+ T  +   K A L  L
Sbjct: 181 QTLLFSATLTDTLQQLQSIAMNRPFFWEHKSDVQTVEELDQRFILTPEKV--KDAYLVHL 238

Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q+ QD   +   IIF N  K+   L   L +  F   ++H  + QR R   L+ FK   
Sbjct: 239 IQTFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLAKFKSNV 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++A+D+AARGLDIP V  V N + P   + YIHR+GRT RAGR+G + TLV + DI 
Sbjct: 299 FKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIH 358

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI----AQHNHARKNNPIPQKSTGFDRRKK 411
            I+AIE+  + K+            P+E+ ++     Q N  R+   I  +ST FD +KK
Sbjct: 359 LINAIEEQNQTKLKEF---------PIEEKEVLKILTQVNVTRRQCEIKLESTDFDEKKK 409


>gi|219870628|ref|YP_002475003.1| ATP-dependent RNA helicase RhlB [Haemophilus parasuis SH0165]
 gi|219690832|gb|ACL32055.1| ATP-dependent RNA helicase RhlB [Haemophilus parasuis SH0165]
          Length = 406

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 138/367 (37%), Positives = 214/367 (58%), Gaps = 9/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   V+ A+   G+   TPIQ KT+P  L R D+ G AQTGTGKT +F++     
Sbjct: 10  FIDFPIHDSVLAALDSKGFEFCTPIQAKTLPYTLIRQDIAGQAQTGTGKTLAFLVATFHH 69

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L       +   PR LIL PTRELA Q+A +     +  +L +AL  GG  ++ Q +++E
Sbjct: 70  LLNHDIPTKHNQPRALILAPTRELAVQIASDASILTQYADLRLALAYGGDGYDKQLQEIE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTR 178
           RG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P    R
Sbjct: 130 RGVDILIGTTGRVIDYVKQGIIDLDKIQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEER 189

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237
            T+LFSAT++  +++++   + N + +E+     T   I E  F   Y     K ALL  
Sbjct: 190 LTMLFSATLSHRVRELAFEDMHNAEYVEIEPLQRTGHRIKEELF---YPSNEDKMALLLT 246

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++ ++     I+F N K     +   L   G  V  + G+I Q+ R+ +L +F +G + 
Sbjct: 247 LME-EEWPDRCIVFANTKHKCEEIWSYLSADGHRVGLLTGDIPQKKRLALLDSFTQGELD 305

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IPDV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +    ++
Sbjct: 306 ILVATDVAARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACERYAVNL 365

Query: 358 DAIEKLI 364
            AIE+ I
Sbjct: 366 PAIEEYI 372


>gi|71995724|ref|NP_490761.2| hypothetical protein Y65B4A.6 [Caenorhabditis elegans]
 gi|31746585|gb|AAK29954.2| Hypothetical protein Y65B4A.6 [Caenorhabditis elegans]
          Length = 399

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 132/367 (35%), Positives = 210/367 (57%), Gaps = 5/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + IP +L+  DV   AQ+GTGKTA+F + +L  
Sbjct: 28  FDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQS 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 88  LD---TQVRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYG 144

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   + +I   +P   Q +L
Sbjct: 145 QHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVL 204

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L+   L   
Sbjct: 205 LSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLID--LYDT 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   ++FCN ++ V  L   +++  F+V ++HG+++Q+ R +++  F+ GT ++++++
Sbjct: 263 LTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLIST 322

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ ARGLD+P V  V N+D+PN  E YIHRIGR+GR GR G A   V ++D++ +  IE+
Sbjct: 323 DVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDIEQ 382

Query: 363 LIEKKVD 369
               ++D
Sbjct: 383 YYSTQID 389


>gi|294630176|ref|ZP_06708736.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
 gi|292833509|gb|EFF91858.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
          Length = 510

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 133/348 (38%), Positives = 190/348 (54%), Gaps = 5/348 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L
Sbjct: 92  LTFADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTL 151

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  GR     PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LE
Sbjct: 152 ARLAGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALE 211

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVL+ TPGR+ D  NRG   + N+E+ V+DEAD+M D+GF+P +  +   +P   Q 
Sbjct: 212 RGVDVLVATPGRLRDIINRGACSLENVEVAVLDEADQMSDLGFLPEVTELLDQIPAGGQR 271

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM +E+  + + +L +P   EV++      T+ H  +       K  A +   + 
Sbjct: 272 MLFSATMENEISTLVKRYLSDPVTHEVDSAQGNVTTMSHHILIV---KPKDKAPVTAAIA 328

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+      IIF   +     +   L   G    A+HG + Q +R + L++FK+G + ++V
Sbjct: 329 SRK--GRTIIFVRTQLGADRIAEQLRDAGVKADALHGGMTQGARTRTLADFKDGYVNVLV 386

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           A+D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L
Sbjct: 387 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSL 434


>gi|194468573|ref|ZP_03074557.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194454937|gb|EDX43776.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
          Length = 421

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P+VV A+   G+   TPIQ   +PL L    V G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRYVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAA 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIESYIGHSI 379


>gi|294813953|ref|ZP_06772596.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|326442363|ref|ZP_08217097.1| putative ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC
           27064]
 gi|294326552|gb|EFG08195.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 757

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 131/346 (37%), Positives = 190/346 (54%), Gaps = 5/346 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L  
Sbjct: 80  FADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLAR 139

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +GR   + PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LERG
Sbjct: 140 LAQGRTEKKKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERG 199

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+ D  NRG   + N+E+ V+DEAD+M D+GF+P +  +   VP   Q +L
Sbjct: 200 VDILVATPGRLRDIINRGACSLENVEVAVLDEADQMSDLGFLPEVTELLDQVPGGGQRML 259

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E+  + + +L NP   EV++      T+ H  +    +   K  +   +   +
Sbjct: 260 FSATMENEISTLVKRYLTNPVSHEVDSAQGNVTTMTHHVLVVKPK--DKAPVTAAIAARK 317

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L + G    A+HG + Q +R + L++FK+G +  +VA+
Sbjct: 318 GRT---IIFVRTQLGADRIAEQLREAGVKADALHGGMTQGARTRTLADFKDGYVNALVAT 374

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           D+AARG+ +  +  V N D     ++Y+HR GRT RAG+ G   +L
Sbjct: 375 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGTVVSL 420


>gi|317026711|ref|XP_001399394.2| ATP-dependent RNA helicase dbp2 [Aspergillus niger CBS 513.88]
          Length = 564

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 134/373 (35%), Positives = 208/373 (55%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ +PT IQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 139 FDEAGFPQYVLSEVKAQGFDRPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 198

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 199 INAQPLLAPGDG----PIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQI 254

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 255 RDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 314

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT ++SAT   E+++++ +FL +  ++ + +   +A       V   + + K+  +++
Sbjct: 315 DRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 374

Query: 237 QLLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L +  +   N  +IF   K+    +   L + G+   +IHG+  Q+ R  +L+ FK G 
Sbjct: 375 HLEKIMENRANKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGK 434

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A T    ++ K
Sbjct: 435 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSK 494

Query: 356 HI-DAIEKLIEKK 367
              D +  L E K
Sbjct: 495 QARDLVTILTEAK 507


>gi|198244929|ref|YP_002217852.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|226739544|sp|B5FN74|RHLB_SALDC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|197939445|gb|ACH76778.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326625639|gb|EGE31984.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 421

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P+VV A+    +   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPQVVEALEKKRFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAA 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIESYIGHSI 379


>gi|148228442|ref|NP_001082679.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Xenopus laevis]
 gi|51704021|gb|AAH80992.1| LOC398649 protein [Xenopus laevis]
          Length = 610

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 139/376 (36%), Positives = 209/376 (55%), Gaps = 15/376 (3%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEK 65
           V+  +LD  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        LE+
Sbjct: 93  VLDVLLDQRFKEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAMVHINHQPYLER 152

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
           G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG ++
Sbjct: 153 GDG----PICLVLAPTRELAQQVQQVADDYGKTSRLKSTCIYGGAPKGPQIRDLERGVEI 208

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
            I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL++SA
Sbjct: 209 CIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 268

Query: 186 TMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS--Q 242
           T   E+++++E+FL++  +I + N   S    I    +    Q S+K   L QL++    
Sbjct: 269 TWPKEVRQLAEDFLRDYSQINIGNLELSANHNILQ--IVDVCQESEKDHKLIQLMEEIMA 326

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     IIF   K+    L   + + G+    IHG+  Q+ R  +L  F+ G   +++A+
Sbjct: 327 EKENKTIIFVETKRRCDELTRRMRRDGWPAMCIHGDKSQQERDWVLCEFRTGKAPILIAT 386

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLD+ D+  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    + K
Sbjct: 387 DVASRGLDVEDIKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELVK 446

Query: 363 LIEKKVDWLNGDLSSL 378
           ++E+    +N  L  L
Sbjct: 447 VLEEANQTINPKLMQL 462


>gi|169346889|ref|ZP_02865837.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens C str.
           JGS1495]
 gi|169296948|gb|EDS79072.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens C str.
           JGS1495]
          Length = 478

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 128/364 (35%), Positives = 219/364 (60%), Gaps = 6/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ A+ + GY  P+ +Q  +IP +L+  D+   +QTG+GKTASF +P  
Sbjct: 1   MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + EK     +  + L+L PTRELA QV D     G+   +    + G  PF  Q ++L+
Sbjct: 59  -VCEKINIEEKKVQCLVLTPTRELAIQVKDELSNIGRIKKVRCVAIFGKQPFNEQIRELK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+ DH  RG L ++ +  +VIDEAD+ML MGFI  I++I   +   + T
Sbjct: 118 QRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT + E++++ E +++NP  +EV +     + IE   +    + +K  AL + L  
Sbjct: 178 ALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEK-NKGKALWKCLYA 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ I+FCN +  V ++   L+ +G +   +HG+++Q+ R++++ NF++   +++V
Sbjct: 237 YHP--ESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ +  +  V N++VP   E+Y+HRIGRTGRAGR GKA T V   + K+++ +
Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 354

Query: 361 EKLI 364
           E+ I
Sbjct: 355 EEYI 358


>gi|330831232|ref|YP_004394184.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565]
 gi|328806368|gb|AEB51567.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii
           B565]
          Length = 406

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 211/377 (55%), Gaps = 9/377 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L P ++ A L      PT IQ   IP  L   D+  +AQTG+GKT +F LP+L
Sbjct: 1   MTFSELALHPDLL-ASLPVTLQTPTRIQQLAIPAALAGQDLLALAQTGSGKTLAFGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+   ++V+    L+L PTRELA QV    ++  +   L +  L GG+  E Q  +L 
Sbjct: 60  QRLDPASSQVQ---GLVLVPTRELAIQVTAALKEGAEALGLRIVTLCGGVAQERQQAELA 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +L+ TPGR+ D   +  L ++ +++LV+DEADR+L+MGF P I+ +   +P  RQT
Sbjct: 117 LGPQLLVATPGRLRDLLTQQVLGLDGLQLLVLDEADRLLEMGFAPDIKALLGFIPADRQT 176

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL+ ++   L+ P RIE N  +S    IE          S K   L  LL+
Sbjct: 177 LLFSATLPAELETLANGLLREPTRIEANPLNSVVNEIEERLY--LVNKSSKVPALISLLK 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F + + +   +   L K G +V A+HG  +Q  R + L +FKEG I+++V
Sbjct: 235 EQ-AWPQVLVFISARDDADGVARKLAKAGIAVAALHGEKEQAVREQALGDFKEGKIRVLV 293

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ +  +  V N D+P  A  Y+HRIGRT RAGR G A +LV   +   + AI
Sbjct: 294 ATDLMARGIHVEALPVVINLDLPASAPVYVHRIGRTARAGREGLAISLVCHGESDMLQAI 353

Query: 361 EKLIEKKVDWLNGDLSS 377
             L  +++    GDL+ 
Sbjct: 354 RTLTGRELPL--GDLAG 368


>gi|253681398|ref|ZP_04862195.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873]
 gi|253561110|gb|EES90562.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873]
          Length = 370

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 133/358 (37%), Positives = 206/358 (57%), Gaps = 6/358 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +LG+S   +  +   G   PTPIQ K++ L+   +DV   AQTGTGKT +F+LPM 
Sbjct: 1   MNFKELGISEDTIKVLKSQGITVPTPIQEKSMDLIKNGNDVIAEAQTGTGKTFAFLLPMF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E     +   + LI+ PTRELA Q+ +   K  K  +L +    GG    +Q KKL+
Sbjct: 61  ---ENMSPNINKIQGLIVTPTRELAIQITEEANKLKKAKDLNILAAYGGKDISSQLKKLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH  R  + +  ++ +V+DEAD+ML MGF   ++ I   +    Q 
Sbjct: 118 GNIHLIIATPGRLLDHIKRNTINIEKLKTIVLDEADQMLYMGFKNEVEEIMKHISKKTQI 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  +++K++  +++ P  + +     T + I+   V T     K+ AL + L  
Sbjct: 178 LCFSATMNSQVKKLAYRYMKEPNVVSIQNEEVTLKNIKQAVVET-TDRRKQDALCKVL-- 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIFC  K+ V NL  +L ++G++   IHG++ Q  R +++  FK   IQ ++
Sbjct: 235 DEDNAFMAIIFCRTKRRVDNLEAALHQRGYNCKKIHGDLTQSKRERVMKEFKNMDIQYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           A+D+AARGLDI  V HV+++D+P   E+YIHRIGRTGRAG  G+    +  +D + +D
Sbjct: 295 ATDVAARGLDISGVTHVYSYDIPENTESYIHRIGRTGRAGEKGETCLFIDPKDKRTLD 352


>gi|300121162|emb|CBK21543.2| unnamed protein product [Blastocystis hominis]
          Length = 627

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 140/369 (37%), Positives = 219/369 (59%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  L LS  ++ AV + G+  PTPIQ + IPL L   D+C  A+TG+GKTA+++LP+L  
Sbjct: 172 FNQLRLSRPLLRAVNEMGFTTPTPIQARCIPLALAGKDICAAAKTGSGKTAAYLLPILER 231

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L K  A+  + R LI+ PTRELA QV     K  K  ++T  L++GG+P +AQ   L+R
Sbjct: 232 LLYKNNAQ-NLIRVLIVAPTRELAQQVHTIATKLTKYTSITCCLVVGGLPLQAQAVDLQR 290

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D+++CTPGR++DH  N   + ++++E++++DEADR+L++GF   +  +  L P  RQT
Sbjct: 291 RPDIVVCTPGRMIDHVHNSMSVDLDDVEVVILDEADRLLELGFTEELHELLRLCPVKRQT 350

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATMTD++  +    LQ P R+ V+  +   + +   F+    +  +   LL  + +
Sbjct: 351 LLFSATMTDDVSDLISLSLQKPVRVFVDPVNQVVDRLVQ-FIRVKDESLRTAMLLSIITR 409

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T    IIF  +K     L   L   G     +HGN++Q  R++ L  F +  +  ++
Sbjct: 410 HFKT--ETIIFAERKAEAHLLHIILGLLGLKSAELHGNLNQTQRLRALDRFSKKEVDFLI 467

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V N  +P     YIHR+GRT RAG  G+A T V +ED + +  +
Sbjct: 468 ATDVAARGLDIKGVQTVINLHMPKEEATYIHRVGRTARAGHAGRAVTFV-EEDRRLL--M 524

Query: 361 EKLIEKKVD 369
           +KL+++ V+
Sbjct: 525 KKLVKQAVE 533


>gi|255746112|ref|ZP_05420059.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|255735866|gb|EET91264.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
          Length = 448

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 140/389 (35%), Positives = 212/389 (54%), Gaps = 12/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   + PR LIL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 61  HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            RG   ++ TPGR+ DH +   L +  +E LV+DEADRMLD+GF   ++ I +     R 
Sbjct: 121 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   ++  ++   L  PKRI +   S   + I +H ++  +  +  K ALL 
Sbjct: 181 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDH--KEALLD 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L   +  +  IIF   + +   L   L +      A+ GN++Q  R  I+  F+    
Sbjct: 239 RILADAE-YRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVF 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++V +D+A+RGLDIP V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D + 
Sbjct: 298 KILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWES 357

Query: 357 IDAIEKLIEKKVDW-----LNGDLSSLNP 380
              +E  +++++ +     L G    L P
Sbjct: 358 FKRVEAFLQQEIQFEVLAGLEGKFKGLKP 386


>gi|319425941|gb|ADV54015.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 449

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 137/370 (37%), Positives = 207/370 (55%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L  +++ ++   G   PT IQ + +P+ L   D+   ++TG+GKT +F+LP L
Sbjct: 1   MQFTDFSLDQRLLQSLKHMGITAPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   R+   R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRVISTRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            +    ++ TPGRI DH  +  L +N +E+L++DEADRMLD+GF P ++ I       R 
Sbjct: 121 AKEPHFIVATPGRIADHLEQKHLFLNGLELLILDEADRMLDLGFAPQLKTINEAADHKRR 180

Query: 179 QTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   E+  ++   L+NP  + ++   S    I +  F+  +  +  K ALL 
Sbjct: 181 QTLMFSATLDHSEINDIAATLLKNPAHVAIDASHSEHNDIHQRIFLCDHLDH--KEALLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LLQ + T K  I+F   + +   L   L  QGF+  A+ G++ Q +R +I+  F  G  
Sbjct: 239 RLLQDE-THKQVIVFTATRPDTERLAAKLSTQGFATAALSGDLKQAARNQIMDQFARGQQ 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +
Sbjct: 298 QILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDN 357

Query: 357 IDAIEKLIEK 366
              ++  + K
Sbjct: 358 FKKVQIFLRK 367


>gi|296104251|ref|YP_003614397.1| ATP-dependent RNA helicase SrmB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058710|gb|ADF63448.1| ATP-dependent RNA helicase SrmB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 442

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 143/388 (36%), Positives = 221/388 (56%), Gaps = 8/388 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ A+   G+ +PT IQ   IP  L+  DV G A TGTGKTA+++LP+L  
Sbjct: 6   FSELELDESLLNALESKGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPVLQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVAD+  +   N +L +A + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAMQVADHARELAANTHLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          +E L++DEADRMLDMGF   I++I     +  QT+
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRNQTM 185

Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVN-TPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LFSAT+  D ++  +E  L++P  +EV+ TPS+      H +         K  LL+ LL
Sbjct: 186 LFSATLEGDAIKDFAERLLEDP--VEVSATPSTRERKKIHQWYYRADNLEHKVELLKHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++  +  I+F  +++ V  L   L   G + C + G + Q  R + +    +G + ++
Sbjct: 244 KQEEATRT-IVFVRKRERVHELAEMLRNAGINNCYLEGEMAQIKRTEGIKRLTDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIPDV HV NFD+P   + Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLLQK 362

Query: 360 IEKLIEK--KVDWLNGDLSSLNPPLEKI 385
           I + I++  K   ++G   +   P EK+
Sbjct: 363 IGRYIDEPLKSRVVDGLRPTTRAPSEKM 390


>gi|315084648|gb|EFT56624.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA2]
          Length = 630

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 146/398 (36%), Positives = 224/398 (56%), Gaps = 24/398 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L  
Sbjct: 51  FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 110

Query: 63  L----EKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    ++G   +     P+ L++ PTRELA QV+ +           V  + GG+ +E+Q
Sbjct: 111 ITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQ 170

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G DV++ TPGR+LD   R  L +++  I+V+DEAD MLD+GF+P ++N+    P
Sbjct: 171 IDALKAGVDVVVGTPGRLLDLSQRKDLDLSHERIVVLDEADEMLDLGFLPDVENLIGRTP 230

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYAQYSKKC 232
            +RQT+LFSATM   +  ++ + L+ P  +     +T ++  +T +  +    A    K 
Sbjct: 231 ASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY---QAHPLDKI 287

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            ++ ++LQ+ D  K  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+
Sbjct: 288 EIIGRILQANDVEKV-IIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFR 346

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   
Sbjct: 347 HGEATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWA 406

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           D+       KLI K    LN +LS    P+E    + H
Sbjct: 407 DVTRW----KLINKA---LNLELSE---PVETYSTSPH 434


>gi|6324217|ref|NP_014287.1| Dbp2p [Saccharomyces cerevisiae S288c]
 gi|118284|sp|P24783|DBP2_YEAST RecName: Full=ATP-dependent RNA helicase DBP2; AltName: Full=DEAD
           box protein 2; AltName: Full=p68-like protein
 gi|5272|emb|CAA36874.1| p68 protein [Saccharomyces cerevisiae]
 gi|1302034|emb|CAA95991.1| DBP2 [Saccharomyces cerevisiae]
 gi|285814541|tpg|DAA10435.1| TPA: Dbp2p [Saccharomyces cerevisiae S288c]
          Length = 546

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 131/358 (36%), Positives = 204/358 (56%), Gaps = 11/358 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ KPT IQ +  P+ L   D+ GIA TG+GKT S+ LP +  
Sbjct: 115 FDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVH 174

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+G +  +    + GG+P   Q 
Sbjct: 175 INAQPLLAPGDG----PIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQI 230

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG++++I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 231 RDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 290

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E+++++ ++L +P +++V +   +A       V   + + K+  L +
Sbjct: 291 DRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNK 350

Query: 237 QL-LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L   SQD     +IF + K+   ++   L + G+   AIHG+ DQR R  +L  F+ G 
Sbjct: 351 YLETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGR 410

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             +MVA+D+AARG+D+  + +V N+D+P   E+Y+HRIGRTGRAG  G A +   +++
Sbjct: 411 SPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQN 468


>gi|238794287|ref|ZP_04637900.1| ATP-dependent RNA helicase rhlB [Yersinia intermedia ATCC 29909]
 gi|238726371|gb|EEQ17912.1| ATP-dependent RNA helicase rhlB [Yersinia intermedia ATCC 29909]
          Length = 428

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 213/368 (57%), Gaps = 11/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+D  L P V+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+    
Sbjct: 9   LKFSDFALHPLVIEALENKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTF 68

Query: 61  TIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L     E+GR +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q
Sbjct: 69  HYLLSHPAEEGR-QTNQPRALIMAPTRELAVQIHSDAESLSQMTGLKLGLAYGGDGYDKQ 127

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P
Sbjct: 128 LKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMP 187

Query: 176 FT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
               R  +LFSAT++  +++++   + N + +EV     T   I+      Y    +K  
Sbjct: 188 SVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELF--YPSNEEKMR 245

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LLQ L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL +F +
Sbjct: 246 LLQTLIE-EEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTK 304

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E 
Sbjct: 305 GDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEY 364

Query: 354 IKHIDAIE 361
             ++ AIE
Sbjct: 365 ALNLPAIE 372


>gi|302833407|ref|XP_002948267.1| hypothetical protein VOLCADRAFT_31305 [Volvox carteri f.
           nagariensis]
 gi|300266487|gb|EFJ50674.1| hypothetical protein VOLCADRAFT_31305 [Volvox carteri f.
           nagariensis]
          Length = 410

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 142/368 (38%), Positives = 213/368 (57%), Gaps = 10/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+  ++  A    G+  P+ IQ + IP +LQ  DV G+AQTG+GKT +F LP+L  
Sbjct: 1   FEKLGICTQLAEAAAGLGWKSPSNIQEQAIPHLLQGQDVIGLAQTGSGKTGAFSLPILQA 60

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +   R +    LIL PTRELA Q+A+  E  G    +  A+L+GGI   AQ   L + 
Sbjct: 61  LME---RPQEHFALILSPTRELAIQIAEQVEALGSGIGVKCAVLVGGIDMMAQAIALAKR 117

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +L+ TPGR++DH +  K   +  ++ LV+DEAD++LDM F   I  I  ++P  R+T 
Sbjct: 118 PHILVGTPGRVVDHLSNTKGFNLKQLKHLVLDEADKLLDMDFEQEIDQILKVIPRDRRTQ 177

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT+++QK+    L  P ++EV    ST ET+   +V   A+Y K C L   L  +
Sbjct: 178 LFSATMTNKVQKLQRACLVRPVKVEVAAKYSTVETLRQQYVFIPAKY-KDCYLAYVL--N 234

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + +    +IF    ++   +   L   GF    IHG++ Q  R+  L+ FK G   ++ A
Sbjct: 235 ELSGSTFMIFTRTCESTRRIALMLRNLGFGAVPIHGHMSQPKRLGALNKFKAGERSILAA 294

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDIP V  V N+D    +++YIHR+GRT RAGR G++ T+V + D++    IE
Sbjct: 295 TDVASRGLDIPSVDVVINYD---NSKDYIHRVGRTARAGRSGRSVTIVTQYDVELFQKIE 351

Query: 362 KLIEKKVD 369
            L   K++
Sbjct: 352 HLTGVKME 359


>gi|326430178|gb|EGD75748.1| eIF-4a [Salpingoeca sp. ATCC 50818]
          Length = 409

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 208/368 (56%), Gaps = 5/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+GL  +++  +   G+ +P+ IQ + I    +  DV   AQ+GTGKTA+F + +L 
Sbjct: 37  NFDDMGLKAELLRGIYSYGFERPSAIQQRAIVPCTKGRDVIAQAQSGTGKTATFSVSVLQ 96

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  R   +    LIL PTRELA Q  D  E  G+  ++     IGG   +    KLE+
Sbjct: 97  RIDTTRPECQ---ALILAPTRELATQSLDVLENLGQYMDVKTMGCIGGTRVQDDMAKLEQ 153

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+    N G L ++N+ + V+DEAD ML  GF   I +I   +P   Q +
Sbjct: 154 GVQVIVGTPGRVFHMINSGALDVSNLGVFVLDEADEMLSFGFTDQIYDIFQTLPKDVQVI 213

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM D++ +V++ F+++P RI V     T E I   +V    +   K   L  + ++
Sbjct: 214 LISATMPDDVLEVTKRFMRDPIRILVKKEQLTLEGIRQFYVDV-GKEDWKLETLSDIWKT 272

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  +G  V   HG++ Q  R  I+  F+ G+ ++++ 
Sbjct: 273 I-TISQAVIFCNTRRKVDWLTEQLRARGHQVSCTHGDMTQDERNMIMKEFRAGSTRVLIT 331

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P+  ENY+HRIGR+GR GR G A   VA++D++ +  +E
Sbjct: 332 TDLLARGIDVQQVSLVINFDLPSNRENYLHRIGRSGRFGRKGVAINFVAEDDVRRLKELE 391

Query: 362 KLIEKKVD 369
           +  + ++D
Sbjct: 392 EFYQTQID 399


>gi|212550405|ref|YP_002308722.1| ATP-dependent RNA helicase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548643|dbj|BAG83311.1| putative ATP-dependent RNA helicase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 548

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 133/366 (36%), Positives = 215/366 (58%), Gaps = 8/366 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+ P ++ A+ + GY  P PIQ K IP +L + ++V  +A+TGTGKTA+F LP   
Sbjct: 4   FEELGIIPDILKAITEIGYENPMPIQEKVIPYLLGKGNEVIALAETGTGKTAAFGLP--- 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
           IL++ +     P+ ++L PTREL  Q+A++   Y K    L +  + GG   E+Q K L 
Sbjct: 61  ILQQIQIHHEHPQAVVLCPTRELCLQIANDINNYSKYLKKLKILPIYGGSNIESQIKALR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ T GR++D   RG + +  +  +V+DEAD ML +GF   I  I   +P  R  
Sbjct: 121 GGVHIVVATSGRLIDLIKRGAVDLQYVRNVVLDEADEMLSVGFSESIDEILRHIPEDRNM 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+  +++ +++NP  I +   +S   T+ H +       S +  LL++L+ 
Sbjct: 181 LLFSATMPLEISWITKKYMRNPHEIVIGKKNSGGRTVRHVYYM--VSVSDRYFLLKRLVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GI+FC  K     + + L + G++V A+HG++ Q  R  I+  F+   IQL+V
Sbjct: 239 YHPNIY-GIVFCRTKNETQEIANFLIRDGYNVDALHGDLSQSQRDYIMQKFRLHNIQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLD+  + H+ N+ +P+  E+YIHR GRTGRAG+ G +  ++  ++   I AI
Sbjct: 298 ATDVASRGLDVDGLSHIINYGLPSDIESYIHRSGRTGRAGKTGTSIAIIHLKEKFKIRAI 357

Query: 361 EKLIEK 366
           E+ I K
Sbjct: 358 ERCINK 363


>gi|164660112|ref|XP_001731179.1| hypothetical protein MGL_1362 [Malassezia globosa CBS 7966]
 gi|159105079|gb|EDP43965.1| hypothetical protein MGL_1362 [Malassezia globosa CBS 7966]
          Length = 638

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 152/419 (36%), Positives = 230/419 (54%), Gaps = 45/419 (10%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  L L+  ++  +    + +PTPIQ +TIP+ L   D+   A TG+GKTA+F++P   
Sbjct: 78  DFTALQLNRALLRGLAALNFSRPTPIQARTIPIALAGKDIVAGAVTGSGKTAAFLIP--- 134

Query: 62  ILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           I+E+   R R       R ++L PTRELA Q     +  GK  N+   L +GG+  + Q 
Sbjct: 135 IMERLSYRQRSADDAKSRVVVLCPTRELAIQCHSVAQALGKFMNVRFCLCVGGLSLKLQE 194

Query: 117 KKLERGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            +L+   DV+I TPGR++DH  N     M ++EILV+DEADRML+ GF   +  I  L P
Sbjct: 195 AELKTRPDVIIATPGRLIDHVRNSASFGMEDVEILVMDEADRMLEDGFEDELNEIVRLCP 254

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT+LFSATMT+++ ++    L+ P R+ V+   STA  +   FV   AQ S+     
Sbjct: 255 KQRQTMLFSATMTEDVDQLVRLSLRTPVRLFVDPKRSTASKLTQEFVRVRAQ-SRLTGHA 313

Query: 236 QQLLQSQDTMKNGI--------------IFCNQKKNVVNLCHSLE----KQGFSVCAIHG 277
           +Q  Q++D  +  I              IF   KK    L H L+      G S   +HG
Sbjct: 314 RQ--QAEDQHRAAILVTLCMRTFRDQVIIFVRSKK----LAHQLKILFGLLGLSAAELHG 367

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q  R++ LS F++G +  ++A+DLA+RG+DI  V  V N+D+P + E Y+HR+GRT 
Sbjct: 368 DLSQEQRLQSLSLFRDGKVDFLLATDLASRGIDIRGVQTVINYDMPAQLEPYLHRVGRTA 427

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEK-----------LIEKKVDWLNGDLSSLNPPLEKI 385
           RAGR G+A TLV + D + +  + K           +  + V  L+  ++SL P +E+I
Sbjct: 428 RAGRQGRAVTLVGEPDRRLLKTVLKRTPPEQVKHRLMPSEMVQKLSDTIASLKPEVEQI 486


>gi|242778101|ref|XP_002479171.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218722790|gb|EED22208.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 833

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 142/359 (39%), Positives = 200/359 (55%), Gaps = 3/359 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS  ++  +   G+ KPTPIQ K IP+ L   DV G A TG+GKT +F++P+L  
Sbjct: 313 FQNYNLSRPILRGLAAVGFTKPTPIQRKAIPVALLGKDVVGGAVTGSGKTGAFIIPILER 372

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q  +   K     ++T   LIGG     Q   L++ 
Sbjct: 373 LLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLIGGFSLREQENVLKKR 432

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 433 PDIIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTM 492

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMTD + K+    L  P R+ V+    TA T+   FV     +  K+ A L  L Q
Sbjct: 493 LFSATMTDSVDKLIRVGLNRPVRLMVDAKKQTAGTLVQEFVRLRPGREDKRLASLIHLCQ 552

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      IIF  QKK    +       G     +HG++ Q  R+K + +F++G +  ++
Sbjct: 553 -QVYAARVIIFFRQKKEAHRVRVIFGLFGLKAAELHGSMSQEQRIKSVEDFRDGKVAFLL 611

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           A+D+A+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A TL A  D K + A
Sbjct: 612 ATDVASRGLDIKGVETVINYEAPQTHEIYLHRVGRTARAGRSGRACTLAADPDRKVVRA 670


>gi|320178071|gb|EFW53051.1| ATP-dependent RNA helicase RhlB [Shigella boydii ATCC 9905]
          Length = 421

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 143/373 (38%), Positives = 210/373 (56%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L PKVV ++   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPKVVESLEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PT ELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIADRKVNQPRALIMAPTHELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + IEV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I   +
Sbjct: 367 NLPAIETYIGHSI 379


>gi|117921047|ref|YP_870239.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117613379|gb|ABK48833.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 449

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 137/370 (37%), Positives = 208/370 (56%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L  +++ ++   G   PT IQ + +P+ L   D+   ++TG+GKT +F+LP +
Sbjct: 1   MQFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAM 60

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   RA   R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRVISTRALTKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            +    ++ TPGRI DH  +  L +N +E+LV+DEADRMLD+GF P ++ I +     R 
Sbjct: 121 AKEPHFIVATPGRIADHLEQKNLFLNGLELLVLDEADRMLDLGFAPQLKAINAAADHKRR 180

Query: 179 QTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   E+ +++   L+NP  + +    +  + I +  ++  +  +  K ALL 
Sbjct: 181 QTLMFSATLDHSEINEIAAALLKNPSHVAIGAAHTEHQDITQRIYLCDHLDH--KEALLT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL S +T K  IIF   + +   L   L  QGF+  A+ G + Q +R +I+  F  G  
Sbjct: 239 RLL-SDETHKQVIIFTATRADTERLASKLSAQGFATAALSGELKQAARNQIMDQFARGQQ 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +
Sbjct: 298 QILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDN 357

Query: 357 IDAIEKLIEK 366
              ++  + K
Sbjct: 358 FKKVQLFLRK 367


>gi|291409987|ref|XP_002721272.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Oryctolagus
           cuniculus]
          Length = 789

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 140/363 (38%), Positives = 210/363 (57%), Gaps = 1/363 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 212 LSFQDMNLSRPLLKAISAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 271

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++  +  ++T  L +GG+  ++Q   L 
Sbjct: 272 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALR 331

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +N+IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 332 AAPDILIATPGRLIDHLHNCPSFHLNSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 391

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 392 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 451

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    L   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 452 LTRTFTDHVMLFTQTKKQAHRLHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDVL 511

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K +  
Sbjct: 512 VATDVAARGLDIEGVKTVVNFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 571

Query: 360 IEK 362
           I K
Sbjct: 572 IVK 574


>gi|229844771|ref|ZP_04464910.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 6P18H1]
 gi|229812485|gb|EEP48175.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 6P18H1]
          Length = 415

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 215/368 (58%), Gaps = 10/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   +    + R PR LIL PTREL+ Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 71  LLTHQDPNLKYRHPRALILAPTRELSVQISNDAEFLAKASGLKTALAYGGDGYDKQLQAI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P    
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           R T+LFSAT++ ++++++   + +P+ IE+     T   I E  F   Y     K ALL 
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELF---YPSNQDKMALLL 247

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ +   +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G +
Sbjct: 248 TLMEDE-WPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDL 306

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   +
Sbjct: 307 DILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMN 366

Query: 357 IDAIEKLI 364
           + AIE+ I
Sbjct: 367 LPAIEEYI 374


>gi|307822012|ref|ZP_07652244.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307736578|gb|EFO07423.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 444

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 213/369 (57%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F+ L L  +++ AV   G+ +PTP+Q+++IPL L+  D+   A+TG+GKTA+F+LP L  
Sbjct: 12  FSSLSLDEQLLSAVKKLGFEQPTPVQLQSIPLALEHKDLLVSAETGSGKTAAFLLPALHH 71

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L  G++ VR    LIL PTRELA Q+  + ++  +  +L   L+ GG  F  Q   L
Sbjct: 72  LLTLPSGKSGVR---ALILTPTRELAQQIFKHCQQLTEFTDLKTGLITGGDDFRLQQNML 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R  +++I TPGR+L+   +     +N+E+L++DEADRMLDMGF   +  I +     RQ
Sbjct: 129 RRNTEIVIATPGRVLELMEQEIPDFSNLEVLILDEADRMLDMGFSEDVLTIANSCNTQRQ 188

Query: 180 TLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           TLLFSAT+T   + K+++  L+N + + +NT       IE   V        K  LL  L
Sbjct: 189 TLLFSATLTHFGVIKMADRVLKNHEVVALNTLHDGHRNIEQQIVLA-DDNDHKLKLLIWL 247

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ++ T    ++F N +     L   L  Q   V  +HG +DQ+ R +++  F+EG +++
Sbjct: 248 LQNE-TYDKALVFTNSRIQADALRGPLRGQKLRVGVLHGEMDQKDRNRMMELFREGEVKI 306

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+DLAARGLDI  +  V NFDVP    NYIHRIGRTGR    G    LV   +   + 
Sbjct: 307 MLATDLAARGLDIKGINLVINFDVPRNGINYIHRIGRTGRVDELGLTIALVKHTEWNLMS 366

Query: 359 AIEKLIEKK 367
            IE+ +++K
Sbjct: 367 GIERFLKQK 375


>gi|163789073|ref|ZP_02183517.1| possible ATP-dependent RNA helicase [Flavobacteriales bacterium
           ALC-1]
 gi|159875737|gb|EDP69797.1| possible ATP-dependent RNA helicase [Flavobacteriales bacterium
           ALC-1]
          Length = 450

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 143/375 (38%), Positives = 214/375 (57%), Gaps = 10/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L+  +  A+ D G+  PTPIQ ++  +V    DV GIAQTGTGKT +++LP+L
Sbjct: 1   MTFNDLNLNTPLYNALDDLGFDTPTPIQAQSFNVVASGKDVVGIAQTGTGKTLAYMLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  R     PR L+L PTREL  QV    EK+ K  N  V  + GG     Q + + 
Sbjct: 61  RNLKYSRQD--NPRVLVLVPTRELVVQVVSEIEKFSKYINNRVLGVYGGTNINTQKQAVA 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TPGR+ D      L + +I+ LVIDE D MLD+GF   + NI  ++P  RQ 
Sbjct: 119 QGQDIIVATPGRLYDLAVSRVLQLKSIQKLVIDEVDVMLDLGFRHQLMNIFDILPPRRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSATMT ++ ++  +F  NP +I +    +  E I+         Y+ K  LL++LL 
Sbjct: 179 IMFSATMTKDVDELITDFFINPTKISIAVSGTPLENIKQIRYDVPNFYT-KVNLLEELLH 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEK--QGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +     +IF   K+    L   LE    G S C IH N  Q  R++ +  F+ G  +L
Sbjct: 238 DTNEFSKVLIFVAYKRMADRLFDKLEDIFPGQS-CVIHSNKTQNYRLRSIEQFRAGEHRL 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA--FTLVAKEDIKH 356
           +VA+D+ ARGLDI ++ HV NFD  +  ENY+HRIGRTGRA + G+   F+  A++D + 
Sbjct: 297 LVATDVMARGLDIDNITHVINFDTTDYPENYMHRIGRTGRAEKQGRTILFSTEAEQDAR- 355

Query: 357 IDAIEKLIEKKVDWL 371
            + IE+L++ +++  
Sbjct: 356 -ERIEELMQMQIETF 369


>gi|110835269|ref|YP_694128.1| DEAD-box ATP dependent DNA helicase [Alcanivorax borkumensis SK2]
 gi|110648380|emb|CAL17856.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax
           borkumensis SK2]
          Length = 450

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 131/370 (35%), Positives = 215/370 (58%), Gaps = 5/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FADL L  +++ A+ +     PTP+Q   IP  L+  D+  +A+TG+GKTA+F+LPML  
Sbjct: 4   FADLNLHERLIKALGELEITTPTPVQTAAIPAALEGRDLRVVARTGSGKTAAFLLPMLHQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R R    R LIL PTRELA Q     E  G+   +   LL GG  F+ Q  K+ +
Sbjct: 64  LLQYSRPRTDT-RALILLPTRELAQQTLKQVEALGRYTFIKAELLTGGEDFKVQAAKMRK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             ++LI TPGR+++H + G LL+ ++E+LV+DE+DRMLDMGF   +  + +     RQTL
Sbjct: 123 NPEILIGTPGRLIEHLDAGNLLLQDLEMLVLDESDRMLDMGFNDDVLRLAAECRPERQTL 182

Query: 182 LFSATM-TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT   + ++ +  + L++P+ + +++     E++    + T      K  L+Q LL 
Sbjct: 183 LFSATTGGNAMENMISSVLRDPRSLVLDSVRDLNESVSQQII-TADDVKHKERLVQWLL- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +T    ++F N ++    LC  L      V  +HG  DQ+ R   +   K G ++++V
Sbjct: 241 ANETYDKAVVFTNTREQADRLCGVLVASNLKVFVLHGEKDQKDRKLAMDRLKTGAVKVLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ + ++  V NFD+P   + Y+HRIGRTGR G  G A +L+A  +   + +I
Sbjct: 301 ATDVAARGIHVDNLDLVINFDMPRSGDEYVHRIGRTGRVGGEGTAISLIAAHEWNLMASI 360

Query: 361 EKLIEKKVDW 370
           ++ + +  ++
Sbjct: 361 QRYLRQNFEY 370


>gi|327485295|gb|AEA79701.1| ATP-dependent RNA helicase VCA0061 [Vibrio cholerae LMA3894-4]
          Length = 448

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 140/389 (35%), Positives = 212/389 (54%), Gaps = 12/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   + PR LIL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 61  HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            RG   ++ TPGR+ DH +   L +  +E LV+DEADRMLD+GF   ++ I +     R 
Sbjct: 121 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   ++  ++   L  PKRI +   S   + I +H ++  +  +  K ALL 
Sbjct: 181 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDH--KEALLD 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L   +  +  IIF   + +   L   L +      A+ GN++Q  R  I+  F+    
Sbjct: 239 RILADAE-YRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVF 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++V +D+A+RGLDIP V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D + 
Sbjct: 298 KILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWES 357

Query: 357 IDAIEKLIEKKVDW-----LNGDLSSLNP 380
              +E  +++++ +     L G    L P
Sbjct: 358 FKRVEAFLQQEIQFEVLAGLEGKFKGLKP 386


>gi|312085225|ref|XP_003144594.1| hypothetical protein LOAG_09017 [Loa loa]
 gi|307760242|gb|EFO19476.1| hypothetical protein LOAG_09017 [Loa loa]
          Length = 802

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 141/366 (38%), Positives = 209/366 (57%), Gaps = 23/366 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FADL L P +   +  +GY +PTP+Q  +IP ++   D+   AQTG+GKTA+F++P++  
Sbjct: 344 FADLKLHPWIEENIRLSGYGRPTPVQKYSIPTLMNNRDLMSCAQTGSGKTAAFLVPLINN 403

Query: 61  ------------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
                       T  + GR R + P  LIL PTREL+ Q+ +   K+     +T ALL G
Sbjct: 404 VLQAGPDALYKSTTQQNGRRR-QYPAALILSPTRELSLQIYNESRKFAYRTPITSALLYG 462

Query: 109 GIP-FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           G   +  Q  KL  G  +LI TPGR++D   +G + ++    LV+DEADRMLDMGF P I
Sbjct: 463 GRENYREQINKLRLGVHILIATPGRLIDVMEQGLIGLDGCRFLVLDEADRMLDMGFEPQI 522

Query: 168 QNITSLVPF----TRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFV 222
           + I  L        R T +FSAT   E+Q ++++FL  N   + V    ST+E I    V
Sbjct: 523 RQIVDLSKMPPKGQRVTAMFSATFPKEIQVLAQDFLMPNYVFLAVGRVGSTSENIMQKIV 582

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             + +  +K + L  LL + +     ++F   K+   +L + L+K G++V AIHG++ Q 
Sbjct: 583 --WVEEHEKKSFLMDLLDAGEPSALTLVFVETKRGASDLAYYLQKDGYNVVAIHGDLKQF 640

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R K L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P+  + Y+HRIGRTGR G  
Sbjct: 641 DREKHLETFRSGVAPILVATAVAARGLDIPNVKHVINYDLPSDIDEYVHRIGRTGRVGNV 700

Query: 343 GKAFTL 348
           G A + 
Sbjct: 701 GLATSF 706


>gi|49072840|gb|AAT51707.1| DEAD box RNA helicase [Choristoneura fumiferana]
          Length = 1012

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 134/368 (36%), Positives = 215/368 (58%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G+S K +  +    + KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 353 WAHCGVSKKEMDILKKLNFEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRH 412

Query: 62  ILEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L++        P +LI+ PTREL  Q+  +  K+ K+  L V  + GG     Q  +L+
Sbjct: 413 VLDQSPLEDTDGPISLIMTPTRELCMQIGKDIRKFAKSLGLRVVCVYGGTGISEQIAELK 472

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   +   
Sbjct: 473 RGAEIIVCTPGRMIDMLAANSGRVTNLRRVSYIVLDEADRMFDMGFEPQVMKIIDNIRPD 532

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSAT   +++ ++   LQ P  I+V   S   + +E   VA     +K   LL+ 
Sbjct: 533 RQTVMFSATFPRQMEALARRILQKPIEIQVGGRSVVCKDVEQ-HVAILEDDAKFFKLLE- 590

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL     + + I+F ++++N  +L   L K  +S  ++HG IDQ  R   + +FK G ++
Sbjct: 591 LLGLYSQLGSIIVFVDKQENADSLLKDLMKASYSCMSLHGGIDQFDRDSTIVDFKNGKVK 650

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  E  ++ 
Sbjct: 651 LLVATSVAARGLDVKQLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAWTFLTPEQGRYA 710

Query: 358 DAIEKLIE 365
             + + +E
Sbjct: 711 GDVLRAME 718


>gi|148546618|ref|YP_001266720.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida F1]
 gi|148510676|gb|ABQ77536.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 453

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 137/370 (37%), Positives = 216/370 (58%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+   L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 15  FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 74

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    RV + R LIL PTRELA Q     + + +   +   L+ GG  F+ Q   L +
Sbjct: 75  LVDLSGPRVEI-RALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRK 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DVLI TPGR+L+  N G L ++++++L++DEADRMLDMGF   ++ +        QTL
Sbjct: 134 VPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQTL 193

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAE-TIEHCFVATYAQYSKKCALLQQLL 239
           LFSAT     L+ +    L++P+ + +N+ S  AE T +    A + Q+ ++ A   Q L
Sbjct: 194 LFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIA---QWL 250

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +T    IIF N +     +   L  +      +HG  DQ+ R   +  FK+G+ +++
Sbjct: 251 LANETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVL 310

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+P   + Y+HR+GRTGRAG  G A +L+   D   + +
Sbjct: 311 VATDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSS 370

Query: 360 IEKLIEKKVD 369
           IE+ ++++ +
Sbjct: 371 IERYLKQQFE 380


>gi|239814491|ref|YP_002943401.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
 gi|239801068|gb|ACS18135.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
          Length = 661

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 144/411 (35%), Positives = 228/411 (55%), Gaps = 55/411 (13%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH----------DVCGIAQTGTGKT 52
           F  LGL+P+++ AV D G+ +PT +Q K IPL +             D+   +QTG+GKT
Sbjct: 78  FIKLGLAPELIAAVADLGFTQPTTVQDKVIPLAMGGEAGQDGKARFVDLMVSSQTGSGKT 137

Query: 53  ASFVLPML-TILEKGRA--------------------------------------RVRMP 73
           A+F+LP+L T+L++                                         +   P
Sbjct: 138 AAFLLPVLHTLLKRQAEAEAQAKAEFQRLAAEAAARGEAVPKKPKRKDPTNARHFKAATP 197

Query: 74  RTLILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
             LIL PTRELA QVA D  E       L VA ++GG+P++ Q  KL+  AD+++ TPGR
Sbjct: 198 GALILCPTRELAQQVAHDAIELVRHCRGLRVANVVGGMPYQLQIAKLQ-NADLVVATPGR 256

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           +LD     ++ ++ ++ LV+DEADRMLD+GF   +  +  L    +QT++FSAT    +Q
Sbjct: 257 LLDLQRSMQIKLDQVKFLVVDEADRMLDLGFADDLAEVNQLTIERQQTMMFSATFAPRIQ 316

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
           ++++  ++ P+RI +++P      I+   + A  +Q+ +K  LL   L+   ++   I+F
Sbjct: 317 QLAQRVMREPQRITIDSPQEKHANIKQSLYWADNSQHKRK--LLDHWLRD-TSINQAIVF 373

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
            + +     L + L++ GFS  A+HG + Q  R + L   ++G +Q++VA+D+AARG+D+
Sbjct: 374 ASTQVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVAARGIDV 433

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           P + HVFNF +P +AE+Y HRIGRTGRAGR G A T     D + I  IE+
Sbjct: 434 PTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAITFAEFRDRRKIMDIEQ 484


>gi|50312211|ref|XP_456137.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660243|sp|Q6CIV2|DBP2_KLULA RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49645273|emb|CAG98845.1| KLLA0F23716p [Kluyveromyces lactis]
          Length = 554

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 129/356 (36%), Positives = 199/356 (55%), Gaps = 11/356 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ KPT IQ +  P+ L   D+ G+A TG+GKT S+ LP +  
Sbjct: 115 FDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVH 174

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+G +  +    + GG+P   Q 
Sbjct: 175 INAQPLLSPGDG----PIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQI 230

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+RG ++LI TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 231 RDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 290

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E+++++ ++L +P ++++ +   +A       V     + K+  L +
Sbjct: 291 DRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAK 350

Query: 237 QL-LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L   SQD     IIF + K+    +   L  +G+   AIHG+  Q  R  +L+ F+ G 
Sbjct: 351 HLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGR 410

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
             +MVA+D+AARG+D+  + +V N+D+P   E+Y+HRIGRTGRAG  G A +   +
Sbjct: 411 SPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGSTGTAISFFTE 466


>gi|227833123|ref|YP_002834830.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262182386|ref|ZP_06041807.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227454139|gb|ACP32892.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 430

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 148/396 (37%), Positives = 209/396 (52%), Gaps = 11/396 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FADLGL P+ V  VLD  G   P PIQ   IP  L   DV G   TG+GKT +F LPML+
Sbjct: 4   FADLGL-PRDVVRVLDKQGITTPFPIQEAAIPDALSGKDVLGRGPTGSGKTFTFGLPMLS 62

Query: 62  ILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L   G +R   PR L+L PTRELA Q+    E+      L V  ++GG+      + L 
Sbjct: 63  RLAASGVSRPAHPRGLVLAPTRELATQIQQRLEEPAAALGLRVLAVVGGVNINNHIRSLA 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R  D+L+ TPGR  D  ++GKL  +++ I  +DEAD+M DMGF+P ++ +  L P   Q 
Sbjct: 123 RPVDLLVATPGRAQDLIDQGKLFFDHVAIAALDEADQMADMGFLPQVRKLLKLTPEEGQR 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  E+ K+ E F+  P         +  +T+EH  +    + ++   +L+   +
Sbjct: 183 LLFSATLDGEVNKLVEQFMHEPVTHSTAPVEAAVDTMEHHLIFIGTREARNDVVLRLGAR 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T    I+F   K  V      L + G +   +HG+  Q SR K +  F +G++ ++V
Sbjct: 243 KGKT----IMFMRTKHGVDRQAKKLRRVGINALPLHGDKGQGSRTKAIEGFADGSVPVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV  V + D P   + Y+HR GRT R G  G   TLV  E     D +
Sbjct: 299 ATDIAARGIDIADVSLVVHVDPPAEHKAYLHRSGRTARGGESGTVVTLVTDE---QRDEV 355

Query: 361 EKLIEKK-VDWLNGDLSSLNPPLEKIDIAQHNHARK 395
            KLI K  V   + D+S    P    ++AQ   ARK
Sbjct: 356 AKLIAKAGVKHTDLDISDRANPASSPELAQMTGARK 391


>gi|160380611|sp|A6ZRX0|DBP2_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP2; AltName: Full=DEAD
           box protein 2; AltName: Full=p68-like protein
 gi|151944424|gb|EDN62702.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
 gi|190409099|gb|EDV12364.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
 gi|259149249|emb|CAY82491.1| Dbp2p [Saccharomyces cerevisiae EC1118]
          Length = 546

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 131/358 (36%), Positives = 204/358 (56%), Gaps = 11/358 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ KPT IQ +  P+ L   D+ GIA TG+GKT S+ LP +  
Sbjct: 115 FDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVH 174

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+G +  +    + GG+P   Q 
Sbjct: 175 INAQPLLAPGDG----PIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQI 230

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG++++I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 231 RDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 290

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E+++++ ++L +P +++V +   +A       V   + + K+  L +
Sbjct: 291 DRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNK 350

Query: 237 QL-LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L   SQD     +IF + K+   ++   L + G+   AIHG+ DQR R  +L  F+ G 
Sbjct: 351 YLETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGR 410

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             +MVA+D+AARG+D+  + +V N+D+P   E+Y+HRIGRTGRAG  G A +   +++
Sbjct: 411 SPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQN 468


>gi|92113747|ref|YP_573675.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
           DSM 3043]
 gi|91796837|gb|ABE58976.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
           DSM 3043]
          Length = 424

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/372 (37%), Positives = 210/372 (56%), Gaps = 9/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L   ++ A+   G+   TPIQ + +   L   DV G AQTGTGKTA+F++ +L  
Sbjct: 46  FHDFDLPVPLMRAIHALGFEYCTPIQAEALAKTLLGGDVVGKAQTGTGKTAAFLISILAY 105

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             + +A    +   PR LI+ PTRELA Q+  + +   +  +L VA ++GG+ ++ Q  +
Sbjct: 106 FLEEKAPDGQKPGAPRALIVAPTRELALQIEKDAKALARFTSLNVASVVGGMDYQKQRDQ 165

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
           L R  DVL+ TPGR+LD   +  + +   E+LV+DEADRML MGFIP ++ I    P   
Sbjct: 166 LGRKVDVLVATPGRLLDFHEKRDVDLTQTEVLVLDEADRMLSMGFIPDVKRIVRHTPKAE 225

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT LFSAT + ++  ++  +  +   +E+      A  I+          S K  LL 
Sbjct: 226 ERQTFLFSATFSQDILNLANQWTHDAAHVEIEVSLENAANIDQRVY--LVSDSDKQRLLV 283

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL +Q+ M+  I+F N++  V NL   L K G +V  + G++ Q +R+  L  F+ G +
Sbjct: 284 NLL-NQENMERVIVFGNRRDLVRNLDSELRKAGINVAMLSGDVPQNTRITTLDKFRNGEV 342

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+A RG+ I DV HV N+ +P   E+Y+HRIGRTGRAG  G + + V +ED   
Sbjct: 343 DVLVATDVAGRGIHIDDVSHVVNYTLPEDPEDYVHRIGRTGRAGAEGVSISFVGEEDAFA 402

Query: 357 IDAIEKLIEKKV 368
           +  IE  I  K+
Sbjct: 403 LPGIESYIGDKL 414


>gi|94400887|ref|NP_001035345.1| ATP-dependent RNA helicase vasa [Apis mellifera]
 gi|83701804|gb|ABC41341.1| vasa protein [Apis mellifera]
          Length = 630

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 134/364 (36%), Positives = 209/364 (57%), Gaps = 15/364 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F   GL   V+  +  +GY KPTP+Q   +P+++   D+   AQTG+GKTA+F +P++ T
Sbjct: 198 FEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPIINT 257

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +LE+    V       P+ +I+ PTREL  Q+     K+  N  L   +  GG     Q 
Sbjct: 258 LLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQR 317

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---SL 173
            KL  G  +L+ TPGR+LD   +G++  ++++ LV+DEADRMLDMGF+P I+ +    ++
Sbjct: 318 GKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHETM 377

Query: 174 VPF-TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           VP   RQTL+FSAT  DE+Q ++  FL N   + V         +E  F       +KK 
Sbjct: 378 VPLGERQTLMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACSDVEQNFYEV--ARNKKK 435

Query: 233 ALLQQLLQSQD---TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            LL+++L+ ++   T+   ++F   KK    +   L +  +   +IHG+  QR R + L+
Sbjct: 436 DLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALA 495

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK G + ++VA+ +AARGLDI +V HV N+D+P   + Y+HRIGRTGR G  G+A +  
Sbjct: 496 DFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRATSFF 555

Query: 350 AKED 353
             E+
Sbjct: 556 DPEE 559


>gi|149192208|ref|ZP_01870425.1| ATP-dependent RNA helicase SrmB [Vibrio shilonii AK1]
 gi|148833966|gb|EDL50986.1| ATP-dependent RNA helicase SrmB [Vibrio shilonii AK1]
          Length = 407

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 130/361 (36%), Positives = 210/361 (58%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA+L L P ++ A+ + GY +PT IQ + IP  L   D+   A TGTGKTASF +P +  
Sbjct: 5   FAELDLDPVLLEAIEEMGYSRPTEIQAQAIPQALDAKDILASAPTGTGKTASFAIPAIQY 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +    R L+L PTRELA QVA++ +   K+  L VA + GG+ ++     L +
Sbjct: 65  LLDFPRKKAGPARILVLTPTRELAMQVAEHTKALAKHTRLKVATITGGVTYDTHADTLAQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR++++    +     IE LV+DEADRMLD+GF P +  +++   + +QTL
Sbjct: 125 TQDIVVATPGRLMEYIESERFDCRAIEWLVLDEADRMLDLGFGPTVDRLSAECRWRKQTL 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLL 239
           LFSAT+    ++  + + L+ P  I     +   + I   +  A  A++  K ALL+ +L
Sbjct: 185 LFSATLEGRGVEGFTADLLKAPAEISAEPSTRERKKITQWYHRADNAEH--KLALLKHIL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  I+F   ++ +  L   L+        I G + Q  R   +S F++G++ ++
Sbjct: 243 TEQ--AQRTIVFLKTRERLGELRQQLDSAQIPCSWIQGEMPQDRRNNAISRFRDGSVNIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A ++V   D   +D 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDLPRSADVYLHRIGRTARAGKKGTAISIVEAHDQPMMDR 360

Query: 360 I 360
           +
Sbjct: 361 V 361


>gi|114777669|ref|ZP_01452629.1| putative ATP-dependent RNA helicase [Mariprofundus ferrooxydans
           PV-1]
 gi|114551885|gb|EAU54419.1| putative ATP-dependent RNA helicase [Mariprofundus ferrooxydans
           PV-1]
          Length = 415

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 130/356 (36%), Positives = 211/356 (59%), Gaps = 6/356 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE--KGRARVRMPRTLI 77
           G+ + T IQ K IP +++  DV  IAQTGTGKTA+F +P++  +   K  ++    + ++
Sbjct: 20  GFKRTTDIQFKAIPSIMEGEDVLAIAQTGTGKTAAFAIPVIDKIHRFKTNSQSYGIKCIV 79

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           + PTRELA Q+   FE    +  + V  L GG+  E Q  KL+ G DVLI TPGR+ D  
Sbjct: 80  MVPTRELALQIGKVFESLANHTRVKVFTLHGGVEQERQIAKLQDGIDVLIATPGRMFDLI 139

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
           N+  + +  +  LV+DEAD MLD+GFI  I+ I  ++    QTL FSAT+ DE++K++ +
Sbjct: 140 NQQAIRLEGVSTLVLDEADHMLDLGFIEDIRYIKKMLKKKHQTLFFSATINDEIKKLAYS 199

Query: 198 FLQNPK-RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
            +++   RI+V+     A+ + H FV  + +   K   L + LQ     K  I+F   + 
Sbjct: 200 QVKSEAIRIQVSPEDRIAKNVSH-FV-MFVEMDDKRFFLDRFLQDHPEGKV-IVFVRTRV 256

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
               +  ++ + GF   +IHG+ DQ  R   +  F++G  ++++A+D++ARG+D+PDV  
Sbjct: 257 RAERVVRAMARAGFDTVSIHGDKDQDERATAMQAFRKGDCRVLIATDVSARGIDVPDVDF 316

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
           V N+D+P + ENY+HR+GRTGR  + G A +  + E+   ++AIE  I K ++ +N
Sbjct: 317 VINYDLPEKPENYVHRVGRTGRGMKLGDAISFCSSEEKPLLEAIEDFIAKPIEVMN 372


>gi|242782113|ref|XP_002479938.1| ATP-dependent RNA helicase , putative [Talaromyces stipitatus ATCC
           10500]
 gi|218720085|gb|EED19504.1| ATP-dependent RNA helicase , putative [Talaromyces stipitatus ATCC
           10500]
          Length = 478

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 137/371 (36%), Positives = 216/371 (58%), Gaps = 14/371 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL P++  A    GY  PT IQ + IPL LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 54  FKDLGLIPQLCEACDTLGYKAPTAIQTEAIPLALQNRDLIGLAETGSGKTAAFALPILQA 113

Query: 63  LEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L      +  P+    L+L PTRELA Q+++ FE  G   ++   +L+GG+    Q   +
Sbjct: 114 L------MDKPQPFFGLVLAPTRELAYQISEAFEALGSTISVRSVVLVGGMDMVPQAIAI 167

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +++ TPGR+LDH    K   + +++ LV+DEADR+LDM F P I  I  ++P  R
Sbjct: 168 GKRPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDMDFGPIIDKILKVLPRER 227

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +T LFSATM+ +++ +    L NP R+ V++    T  T+   ++  +  +  K   L  
Sbjct: 228 RTFLFSATMSSKVEGLQRASLSNPLRVSVSSNKYQTVSTLLQYYL--FIPHKHKDVHLIW 285

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL ++   ++ IIF       + L       GF   A+HG + Q +R+  L  F+  +  
Sbjct: 286 LL-NEHVGQSVIIFTRTVHETMRLTILARALGFGAIALHGQLSQSARLGALGKFRSRSRD 344

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARGLDIP V  V N+D+   ++ ++HRIGRT RAG+ GKA +LV + D++  
Sbjct: 345 ILIATDVAARGLDIPSVDLVLNYDLAADSKTHVHRIGRTARAGKSGKAISLVTQYDVEVW 404

Query: 358 DAIEKLIEKKV 368
             IEK +++K+
Sbjct: 405 LRIEKALDRKL 415


>gi|62857657|ref|NP_001016781.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Xenopus (Silurana)
           tropicalis]
          Length = 609

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 141/379 (37%), Positives = 212/379 (55%), Gaps = 16/379 (4%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 90  PQYVLDVLIDQRFKEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAMVHINHQPY 149

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK+  L    + GG P   Q + LERG
Sbjct: 150 LERGDG----PICLVLAPTRELAQQVQQVADDYGKSSRLKSTCIYGGAPKGPQIRDLERG 205

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 206 VEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 265

Query: 183 FSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +SAT   E+++++E+FL++  +I + N   S    I    +    Q S+K   L QL++ 
Sbjct: 266 WSATWPKEVRQLAEDFLRDYVQINIGNLELSANHNILQ--IVDVCQESEKDHKLIQLMEE 323

Query: 242 --QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q+ R  +L  F+ G   ++
Sbjct: 324 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQQERDWVLCEFRTGKAPIL 383

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ D+  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    
Sbjct: 384 IATDVASRGLDVEDIKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 443

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E+    +N  L  L
Sbjct: 444 LVKVLEEANQTINPKLMQL 462


>gi|170718552|ref|YP_001783396.1| ATP-dependent RNA helicase RhlB [Haemophilus somnus 2336]
 gi|189040032|sp|B0UUZ9|RHLB_HAES2 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|168826681|gb|ACA32052.1| DEAD/DEAH box helicase domain protein [Haemophilus somnus 2336]
          Length = 419

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 139/367 (37%), Positives = 218/367 (59%), Gaps = 9/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+DL L   V  A+ + G+   TPIQ  ++P+ L+  D+ G AQTGTGKT +F+      
Sbjct: 11  FSDLALHRIVQQAIKEKGFEFCTPIQALSLPITLKGQDIAGQAQTGTGKTIAFLTATFHH 70

Query: 62  ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L+K        PR LIL PTREL  Q+A++     +   L   L  GG  ++ Q K ++
Sbjct: 71  LLQKNNINSSEQPRALILAPTRELVVQIANDANFLVQATGLKTGLAYGGEGYDKQLKVID 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ- 179
           RG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P  +Q 
Sbjct: 131 RGIDILIGTTGRVIDYVKQGIIRLDYIQVVVLDEADRMFDLGFIRDIRYLLRKCPVPQQR 190

Query: 180 -TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237
            T+LFSAT++ ++++++   + +P+ +E+     T   I E  F   Y     K ALL  
Sbjct: 191 LTMLFSATLSYKVRELAFEHMNDPQYVEIEPLQKTGHRIREELF---YPSNQDKMALLMT 247

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ ++  +  IIF N K     +   L   G  V  + G++ Q+ R+ +L  F +GT+ 
Sbjct: 248 LLE-EEWPERCIIFSNTKHRCEEIWGYLSADGHRVGLLTGDVMQKKRLSLLKQFTDGTLD 306

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IPDV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 307 VLVATDVAARGLHIPDVTHVFNYDLPDDCEDYVHRIGRTGRAGESGISISFACEEYAINL 366

Query: 358 DAIEKLI 364
            AIE+ I
Sbjct: 367 PAIEEYI 373


>gi|126339554|ref|XP_001367967.1| PREDICTED: similar to DEAD-box protein p72 [Monodelphis domestica]
          Length = 772

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 214/381 (56%), Gaps = 20/381 (5%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 222 PQYVMDVLMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 281

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 282 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 337

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 338 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 397

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQ 237
           +SAT   E+++++E+FL++  +I V     +A     + ++ C  +   +  K   L+++
Sbjct: 398 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMES--EKDHKLIQLMEE 455

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   
Sbjct: 456 IMAEKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAP 513

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K  
Sbjct: 514 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 573

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K++E+    +N  L  L
Sbjct: 574 RELIKVLEEANQAINPKLMQL 594


>gi|330923164|ref|XP_003300130.1| hypothetical protein PTT_11286 [Pyrenophora teres f. teres 0-1]
 gi|311325925|gb|EFQ91808.1| hypothetical protein PTT_11286 [Pyrenophora teres f. teres 0-1]
          Length = 483

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 134/373 (35%), Positives = 207/373 (55%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ KPT IQ +  P+ L   DV G+A+TG+GKT ++ LP +  
Sbjct: 63  FDEAGFPSYVMNEVKAQGFAKPTAIQAQGWPMALSGRDVVGVAETGSGKTLTYCLPAIVH 122

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 123 INAQPLLAPGDG----PIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQI 178

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 179 RDLARGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 238

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT ++SAT   E+++++ ++ ++  ++ + +   +A       V    ++ K+  + +
Sbjct: 239 DRQTCMWSATWPKEVRQLAADYQKDWIQVNIGSMDLSANHRIQQIVEVCTEFEKRDRMAK 298

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L        N I IF   K+    +   L + G+   +IHG+  Q  R  +L+ FK G 
Sbjct: 299 HLETIMSDKDNKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 358

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+A+RG+D+ ++ HVFN+D PN +E+Y+HRIGRTGRAG +G A TL   ++ K
Sbjct: 359 SPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYVHRIGRTGRAGANGTAITLFTTDNSK 418

Query: 356 HI-DAIEKLIEKK 367
              D ++ L E K
Sbjct: 419 QARDLVQILTESK 431


>gi|291387348|ref|XP_002710262.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Oryctolagus
           cuniculus]
          Length = 1030

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 148/447 (33%), Positives = 242/447 (54%), Gaps = 25/447 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 373 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 432

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 433 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 488

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 489 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 548

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232
           V   RQT++FSAT    ++ ++   L  P  ++V   S     +E    V    +   K 
Sbjct: 549 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 608

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L    Q   ++   IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK
Sbjct: 609 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 665

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++
Sbjct: 666 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 725

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             ++   I K +E     L+G  +++   LEK+     +  +    I +KS+GF  +   
Sbjct: 726 QARYAGDIIKALE-----LSG--TTVPSDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 778

Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439
           +   +  +   E +K+ K    +Q++D
Sbjct: 779 FDETEQALA-NERKKLQKAALGLQDSD 804


>gi|242045284|ref|XP_002460513.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
 gi|241923890|gb|EER97034.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
          Length = 760

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 146/364 (40%), Positives = 205/364 (56%), Gaps = 7/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  +V A    GY KPTPIQ   IPL L   D+CG A TG+GKTA+F LP+L  
Sbjct: 187 FLELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLER 246

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     RV   R LIL PTRELAAQV    EK  +  ++   L++GG+  + Q   L   
Sbjct: 247 LLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSM 306

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D+++ TPGRI+DH  N   + + ++ ++++DEADR+L++GF   IQ +  + P  RQT+
Sbjct: 307 PDIVVATPGRIIDHLRNSLSVGLEDLAVVILDEADRLLELGFSAEIQELIRMCPKRRQTM 366

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQLL 239
           LFSATMT+E+ ++ +  L  P R+E + PS    A   E       A+ S + A+L  L 
Sbjct: 367 LFSATMTEEIDELIKLSLNKPVRLEAD-PSLKRPATLTEEVVRIRRARESNQEAVLLALC 425

Query: 240 QSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               T K   IIF   K++   L       G     +HGN+ Q  R++ L  FK+  +  
Sbjct: 426 LK--TFKRSVIIFSGTKQSAHRLKIVFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDF 483

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI  V  V NF  P   + Y+HR+GRT RAGR G A T V  +D   + 
Sbjct: 484 LIATDVAARGIDIVGVRTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRSLLK 543

Query: 359 AIEK 362
           AI K
Sbjct: 544 AIAK 547


>gi|39995299|ref|NP_951250.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens PCA]
 gi|39982061|gb|AAR33523.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens PCA]
          Length = 460

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 149/404 (36%), Positives = 223/404 (55%), Gaps = 15/404 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L   ++  +   GY + TPIQ  ++PL+L   DV   A+TG+GKTA+F + +L+ 
Sbjct: 6   FSSLRLKAPMLRNLASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLLSR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+    RV+    L+L PTRELA QV     +  +   N+ +  + GG+PF  Q   LE 
Sbjct: 66  LDALSFRVQ---ALVLCPTRELADQVGKELRRLARFTDNIKILTICGGVPFGPQLGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V+I TPGR+LDH  RG L ++ +  LV+DEADRMLDMGF   I  + +  P  RQTL
Sbjct: 123 GAHVVIGTPGRLLDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDISALIAAAPPKRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D +  +S    + P  + V+        IE  F        ++   ++++L  
Sbjct: 183 LFSATYPDSIAAMSAGVQREPVEVSVDEVHGEG-AIEQVFYEV--DSGQRIEAVERIL-G 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ +IFCN K     + ++L  +G++  AIHG++DQR R ++L  F   +  ++VA
Sbjct: 239 HYRPESALIFCNTKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRFANRSASVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++  V N+++    E + HRIGRTGRAG  G A +LV   + + I AI 
Sbjct: 299 TDVAARGLDIKELSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLVTPRESRLIAAIA 358

Query: 362 KLIEKKVDWLNGDLSSL-----NPPLEKIDIAQHNHARKNNPIP 400
            +    +    GDLS+L      PPL  +     +  RKN   P
Sbjct: 359 DVPGSIIA--RGDLSTLAPLTAKPPLPPMVTLCIDGGRKNKLRP 400


>gi|169335734|ref|ZP_02862927.1| hypothetical protein ANASTE_02154 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258472|gb|EDS72438.1| hypothetical protein ANASTE_02154 [Anaerofustis stercorihominis DSM
           17244]
          Length = 510

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 152/400 (38%), Positives = 217/400 (54%), Gaps = 27/400 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L ++  +   + + G+  PT IQ K IP +    DV G +QTGTGKT +F +P +  
Sbjct: 6   FSELEINLDINRVLDEMGFTNPTDIQNKAIPAIRSGVDVIGKSQTGTGKTIAFAIPAIEK 65

Query: 63  L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNK 117
           +    EK  A+V     LI+ PTRELA Q     +K  K    + V  + GG+  E Q  
Sbjct: 66  IDIEQEKPTAQV-----LIICPTRELAQQGYAEIKKLTKYMPEIKVVDIYGGVSMERQIS 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL++ A ++I TPGRI DH  R  L + NI+++V+DEAD ML MGF   I  I    P T
Sbjct: 121 KLKK-AHIVIGTPGRIKDHLKRRTLKLQNIKMVVLDEADEMLSMGFKEDIDTILKTAPDT 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSATM   +  + + FL+NP  I+++    T   I   ++       KK  +L  
Sbjct: 180 RQTVLFSATMPPAIMNIIDTFLKNPLLIQIDKEQVTVNKIAQNYID--VPKGKKKEVLNL 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL    + K  IIFCN K+ V +L   L K GFS   +HG+I Q  R +++SNFK     
Sbjct: 238 LLHYYGS-KLTIIFCNTKRMVDDLTKFLRKNGFSAECLHGDIRQNERSRVMSNFKNAKTP 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ DV +V N+D+P  +E YIHRIGRT R G+ G + T+         
Sbjct: 297 ILVATDVAARGIDVKDVEYVINYDIPQNSEYYIHRIGRTARGGKTGTSITMTNN------ 350

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
                   K+V  L   L   N  ++K+DI   N     N
Sbjct: 351 -------RKQVTDLKMILKETNSKIKKLDIPTKNDINSKN 383


>gi|223056226|gb|ACM80365.1| vasa [Asterias forbesi]
          Length = 715

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 137/356 (38%), Positives = 205/356 (57%), Gaps = 12/356 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +  LSP+V   V  A Y +PTP+Q   IP++    D+   AQTG+GKTA+F+LP+ T 
Sbjct: 263 FDEAQLSPEVRRNVTKAKYDRPTPVQKYGIPIINSGRDLMACAQTGSGKTAAFLLPIXTG 322

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                I     +  + P+ +I+ PTREL +Q+     K+ ++  L   ++ GG     Q 
Sbjct: 323 MLNNGITGSSFSDXQEPQCIIVSPTRELTSQIYKXAYKFARDTILRPVVIYGGTSVXHQL 382

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K++ERG  + + TPGR++D  NRGK+ +NN + LV+DEADRMLDMGF P ++ +      
Sbjct: 383 KEVERGCHLXVATPGRLMDFINRGKVKVNNCKFLVLDEADRMLDMGFGPEMERLIYXPDM 442

Query: 177 ----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                RQ L+FSAT  +E+ + +  +LQ+   + V      A  I    V    QY KK 
Sbjct: 443 PXKGERQCLMFSATFPNEVXEKAAEYLQDYLFLTVGRVGGAASDITQS-VLEVGQYGKKD 501

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL  LLQ+QD     ++F   K++       L +  F   +IHG+ +QR R + L++F+
Sbjct: 502 QLLA-LLQAQDATDRTLVFVETKRSADFXASVLSQSEFPTTSIHGDREQREREEALADFR 560

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            G   ++VA+ +AARGLDIP+V HV N+D+P+  + Y+HRIGRTGR G  GKA + 
Sbjct: 561 SGRAPVLVATSVAARGLDIPNVKHVVNYDLPSGIDEYVHRIGRTGRVGNLGKATSF 616


>gi|148906344|gb|ABR16327.1| unknown [Picea sitchensis]
          Length = 504

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 202/371 (54%), Gaps = 11/371 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D G    V+  ++ AG+ +PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP + 
Sbjct: 100 NFGDAGFPDYVIEEIVKAGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 159

Query: 62  ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  L  G      P  L+L PTRELA Q+     K+G +  +    + GG P   Q
Sbjct: 160 HVNAQPYLAPGDG----PIVLVLAPTRELAVQIQQEAAKFGASSKIKNTCIYGGAPKGPQ 215

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L +G +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S + 
Sbjct: 216 VRDLSKGVEIVIATPGRLIDMLESQHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIR 275

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTL +SAT   E++ ++   L NP ++ + +    A       V   +++ K   L+
Sbjct: 276 PDRQTLYWSATWPKEVELLARQSLHNPYKVIIGSSDLKANHAIEQIVEIVSEHEKYTRLI 335

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L +  D  +  +IF   KK    +   L   G+   +IHG+  Q  R  +LS FK G 
Sbjct: 336 QLLEEIMDGSRL-LIFLETKKGCDQVTRKLRMDGWPALSIHGDKSQAERDWVLSEFKAGK 394

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +M A+D+AARGLD+ D+  V N+D P   E+Y+HRIGRTGRAG  G A+T     + +
Sbjct: 395 SPIMTATDVAARGLDVKDIKCVINYDFPGSMEDYVHRIGRTGRAGAKGTAYTYFTAANAR 454

Query: 356 HIDAIEKLIEK 366
               + K++E+
Sbjct: 455 FARDLIKILEE 465


>gi|187731861|ref|YP_001880183.1| ATP-dependent RNA helicase DbpA [Shigella boydii CDC 3083-94]
 gi|187428853|gb|ACD08127.1| ATP-independent RNA helicase DbpA [Shigella boydii CDC 3083-94]
          Length = 457

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 140/377 (37%), Positives = 219/377 (58%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q  T+P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAATLPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAVISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W     +S   PLE
Sbjct: 363 KLNWQTPPANSSIVPLE 379


>gi|223590197|sp|A5DKW3|DRS1_PICGU RecName: Full=ATP-dependent RNA helicase DRS1
 gi|190347530|gb|EDK39816.2| hypothetical protein PGUG_03914 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 705

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 144/384 (37%), Positives = 217/384 (56%), Gaps = 16/384 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  V + GY  P+ IQ  +IP+ +   D+   A TG+GKTA++++P++  
Sbjct: 200 FQALQLSRPLLKGVGNLGYTVPSAIQAASIPIAMMGKDIVAGAVTGSGKTAAYLIPIIER 259

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L    A V   R ++L PTRELA QV D  +K G+   NL   L +GG+    Q ++L+ 
Sbjct: 260 LIYKPAAVSATRVIVLTPTRELAIQVCDVGKKLGQFVANLNFGLAVGGLNLRQQEQQLKS 319

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQ 179
             D+++ TPGR++DH  N     + N+E+LV+DEADRML+ GF   +  I  L+P   RQ
Sbjct: 320 RPDIVVATPGRLIDHIRNSPSFSIENLEVLVMDEADRMLEEGFQVELTEILELIPKHKRQ 379

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  ++Q + +  L  P RI VN P   A  +   FV    +   K ALL  LL
Sbjct: 380 TMLFSATMNTKIQDLIQLSLDKPVRIMVNPPKQAASKLVQEFVRIRKREHLKPALLYHLL 439

Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  D  +    ++F ++K+    L   L   G  V  +HG++ Q  R++ + +F+   + 
Sbjct: 440 RLVDPQQQNRIVVFVSRKEMAHRLRIVLGLLGMKVSELHGSLTQEQRLQSVKDFRSLAVP 499

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ +DLAARGLDIP +  V NFD+P   E Y+HR+GRT RAGR G++ T V + +    
Sbjct: 500 VLICTDLAARGLDIPKIEIVINFDMPKTHEIYLHRVGRTARAGREGRSITFVGESNQDRS 559

Query: 358 ---DAIEKLIEKK--------VDW 370
              DAI+ L E+K        VDW
Sbjct: 560 IVKDAIKSLEEQKNGKAVSRTVDW 583


>gi|93587673|ref|NP_001035277.1| probable ATP-dependent RNA helicase DDX17 isoform 4 [Mus musculus]
 gi|76364169|sp|Q501J6|DDX17_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX17; AltName:
           Full=DEAD box protein 17
 gi|63146347|gb|AAH96036.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Mus musculus]
          Length = 650

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 214/381 (56%), Gaps = 20/381 (5%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 100 PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 159

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 160 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQ 237
           +SAT   E+++++E+FL++  +I V     +A     + ++ C  +   +  K   L+++
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMES--EKDHKLIQLMEE 333

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   
Sbjct: 334 IMAEKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAP 391

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K  
Sbjct: 392 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 451

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K++E+    +N  L  L
Sbjct: 452 RELIKVLEEANQAINPKLMQL 472


>gi|40068493|ref|NP_951062.1| probable ATP-dependent RNA helicase DDX17 isoform 1 [Mus musculus]
 gi|74181626|dbj|BAE30078.1| unnamed protein product [Mus musculus]
 gi|74220643|dbj|BAE31531.1| unnamed protein product [Mus musculus]
 gi|148672698|gb|EDL04645.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_a [Mus
           musculus]
          Length = 652

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 214/381 (56%), Gaps = 20/381 (5%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 100 PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 159

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 160 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQ 237
           +SAT   E+++++E+FL++  +I V     +A     + ++ C  +   +  K   L+++
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMES--EKDHKLIQLMEE 333

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   
Sbjct: 334 IMAEKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAP 391

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K  
Sbjct: 392 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 451

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K++E+    +N  L  L
Sbjct: 452 RELIKVLEEANQAINPKLMQL 472


>gi|22124274|ref|NP_667697.1| ATP-dependent RNA helicase RhlB [Yersinia pestis KIM 10]
 gi|51594521|ref|YP_068712.1| ATP-dependent RNA helicase RhlB [Yersinia pseudotuberculosis IP
           32953]
 gi|108806147|ref|YP_650063.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Antiqua]
 gi|108810260|ref|YP_646027.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Nepal516]
 gi|145600737|ref|YP_001164813.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Pestoides F]
 gi|153947434|ref|YP_001399175.1| ATP-dependent RNA helicase RhlB [Yersinia pseudotuberculosis IP
           31758]
 gi|153997075|ref|ZP_02022208.1| putative DEAD-box helicase [Yersinia pestis CA88-4125]
 gi|170026246|ref|YP_001722751.1| ATP-dependent RNA helicase RhlB [Yersinia pseudotuberculosis YPIII]
 gi|186893519|ref|YP_001870631.1| ATP-dependent RNA helicase RhlB [Yersinia pseudotuberculosis PB1/+]
 gi|218930872|ref|YP_002348747.1| ATP-dependent RNA helicase RhlB [Yersinia pestis CO92]
 gi|229837202|ref|ZP_04457367.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|229839562|ref|ZP_04459721.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229900125|ref|ZP_04515262.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229900428|ref|ZP_04515557.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|32363372|sp|Q8ZAD8|RHLB_YERPE RecName: Full=ATP-dependent RNA helicase rhlB
 gi|56749471|sp|Q66G19|RHLB_YERPS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|122979817|sp|Q1CBQ4|RHLB_YERPA RecName: Full=ATP-dependent RNA helicase rhlB
 gi|123073645|sp|Q1CNK3|RHLB_YERPN RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040087|sp|A4TRC8|RHLB_YERPP RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040117|sp|A7FD47|RHLB_YERP3 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739238|sp|B2K046|RHLB_YERPB RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739239|sp|B1JQ11|RHLB_YERPY RecName: Full=ATP-dependent RNA helicase rhlB
 gi|21957043|gb|AAM83948.1|AE013636_6 putative ATP-dependent RNA helicase [Yersinia pestis KIM 10]
 gi|51587803|emb|CAH19405.1| putative DEAD-box helicase [Yersinia pseudotuberculosis IP 32953]
 gi|108773908|gb|ABG16427.1| DEAD-box helicase [Yersinia pestis Nepal516]
 gi|108778060|gb|ABG12118.1| putative DEAD-box helicase [Yersinia pestis Antiqua]
 gi|115349483|emb|CAL22456.1| putative DEAD-box helicase [Yersinia pestis CO92]
 gi|145212433|gb|ABP41840.1| DEAD-box helicase [Yersinia pestis Pestoides F]
 gi|149289381|gb|EDM39459.1| putative DEAD-box helicase [Yersinia pestis CA88-4125]
 gi|152958929|gb|ABS46390.1| ATP-dependent RNA helicase RhlB [Yersinia pseudotuberculosis IP
           31758]
 gi|169752780|gb|ACA70298.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186696545|gb|ACC87174.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682447|gb|EEO78534.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|229686905|gb|EEO78984.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695928|gb|EEO85975.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229706145|gb|EEO92154.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|320013530|gb|ADV97101.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 428

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 142/367 (38%), Positives = 213/367 (58%), Gaps = 13/367 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P VV A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY 70

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     E+GR +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 71  LLSHPAEEGR-QTNQPRALIMAPTRELAVQIHSDAESLSQVTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV 189

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234
             R  +LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  L
Sbjct: 190 DKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIKEELF---YPSNEEKMRL 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL +F +G
Sbjct: 247 LQTLIE-EEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E  
Sbjct: 306 DLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYA 365

Query: 355 KHIDAIE 361
            ++ AIE
Sbjct: 366 LNLPAIE 372


>gi|167464697|ref|ZP_02329786.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322381282|ref|ZP_08055285.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154858|gb|EFX47129.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 438

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 142/365 (38%), Positives = 217/365 (59%), Gaps = 11/365 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+ P +   +   G + PTPIQ + IP +L+  DV G AQTGTGKT +F+LP+L  
Sbjct: 4   FAALGIDPPLTETLQKNGIITPTPIQKQAIPRILKGTDVIGKAQTGTGKTLAFILPLL-- 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLER 121
            +K RA     + LI+ PTRELA Q+    +K       + V  + GG   E Q  KL R
Sbjct: 62  -QKIRADAPHIQGLIITPTRELALQITAELKKLTAAMEQVRVLAVYGGQDVEGQMNKLRR 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  R  + ++    LV+DEAD+ML +GF+  ++ I + +   RQTL
Sbjct: 121 NVQIVVGTPGRLLDHIRRETIDLSRATALVLDEADQMLHIGFLGEVEEILAELSANRQTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK--CALLQQLL 239
           LFSATM  +++ +++ F+  P+ +E+     T + I    V T  +  ++  C LL +  
Sbjct: 181 LFSATMPKQVRSLAKRFMHQPETVEIQARQITVKEIRQLVVETTDRAKQRVLCTLLDEYR 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++FC  K+    L  +L+ +G+    +HG++ Q  R +++  F+E  + ++
Sbjct: 241 PFL-----AMVFCRTKRRAGTLNQALQAKGYISDELHGDLSQAKREQVMKKFREARLHIL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  V HVFN+D+P+ AE+YIHRIGRTGRAG  G A TL A +D K+++ 
Sbjct: 296 VATDVAARGLDVEGVTHVFNYDIPHDAESYIHRIGRTGRAGGTGLAVTLAAPKDRKYLEQ 355

Query: 360 IEKLI 364
           IEK I
Sbjct: 356 IEKGI 360


>gi|255534825|ref|YP_003095196.1| possible ATP-dependent RNA helicase [Flavobacteriaceae bacterium
           3519-10]
 gi|255341021|gb|ACU07134.1| possible ATP-dependent RNA helicase [Flavobacteriaceae bacterium
           3519-10]
          Length = 380

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 136/380 (35%), Positives = 221/380 (58%), Gaps = 8/380 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ +V   G++KP P+Q +TIP++L   D+ G+AQTG+GKTA FV+P+L
Sbjct: 1   MSFESLGLSHNIIKSVRKLGFLKPFPVQEQTIPVILSGKDLMGVAQTGSGKTACFVMPIL 60

Query: 61  TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNK 117
             L+ +   + R  + L+L PTREL  Q+ + F  + +N    +    + GG+    Q K
Sbjct: 61  DKLQNEDIKKDRNIQVLVLAPTRELVIQIDEVFRVFTENLKREIRTMAVYGGVSINPQMK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +  G +VL+ TPGR+LD  +   L ++ I  LVIDEAD+M  +GF   +  + +++P  
Sbjct: 121 GM-LGVEVLVATPGRLLDLIDHKALSISQITHLVIDEADKMFQLGFEEEMNTLFAMMPPK 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QT+LFSAT+ D+++++ +     P  +E+       + I    +A +     K   L+ 
Sbjct: 180 KQTVLFSATLNDKVEEIKQRLTIEPVLVEIKQEEVDIDQITQ--IAYHVTNESKGPFLRY 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++ QD +K  ++F +  ++  +L   L K      AIHG   Q SR   L  FKEG  Q
Sbjct: 238 LIKEQD-IKQALVFASSTRSADHLAEKLNKNKIPATAIHGQKSQGSRSGNLQGFKEGETQ 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+DL  RG+ I  +  V N+++P    +YIHRIGRTGRA  HG A TL+  ++++H 
Sbjct: 297 ILVATDLIGRGIHIDALEVVINYELPRSPLDYIHRIGRTGRANGHGTAITLLTDDELQHF 356

Query: 358 DAIEKLIEKKVDWL-NGDLS 376
             I+K + K+V+ +  GD++
Sbjct: 357 RVIQKKMGKRVELIRTGDIN 376


>gi|170579138|ref|XP_001894695.1| ATP-dependent RNA helicase An3 [Brugia malayi]
 gi|158598597|gb|EDP36460.1| ATP-dependent RNA helicase An3, putative [Brugia malayi]
          Length = 754

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 141/366 (38%), Positives = 209/366 (57%), Gaps = 23/366 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FADL L P +   +  +GY +PTP+Q  +IP ++   D+   AQTG+GKTA+F++P++  
Sbjct: 291 FADLKLHPWIEGNIRLSGYGRPTPVQKYSIPTLMNNRDLMSCAQTGSGKTAAFLVPLINN 350

Query: 61  ------------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
                       T  + GR R + P  LIL PTREL+ Q+ +   K+     +T ALL G
Sbjct: 351 VLQAGPEALYKSTTQQNGRRR-QYPAALILSPTRELSLQIYNESRKFAYRTPITSALLYG 409

Query: 109 GIP-FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           G   +  Q  KL  G  +LI TPGR++D   +G + ++    LV+DEADRMLDMGF P I
Sbjct: 410 GRENYREQINKLRLGVHILIATPGRLIDVMEQGLIGLDGCRFLVLDEADRMLDMGFEPQI 469

Query: 168 QNITSLVPFT----RQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFV 222
           + I  L        R T +FSAT   E+Q ++++FL  N   + V    ST+E I    V
Sbjct: 470 RQIVDLSKMPPKGQRVTAMFSATFPKEIQVLAQDFLMPNYVFLAVGRVGSTSENIMQKIV 529

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             + +  +K + L  LL + +     ++F   K+   +L + L+K G++V AIHG++ Q 
Sbjct: 530 --WVEEHEKKSFLMDLLDAGEPSALTLVFVETKRGASDLAYYLQKDGYNVVAIHGDLKQF 587

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R K L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P+  + Y+HRIGRTGR G  
Sbjct: 588 DREKHLETFRSGVATILVATAVAARGLDIPNVKHVINYDLPSDIDEYVHRIGRTGRVGNV 647

Query: 343 GKAFTL 348
           G A + 
Sbjct: 648 GLATSF 653


>gi|320540198|ref|ZP_08039853.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
 gi|320029864|gb|EFW11888.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
          Length = 428

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 140/366 (38%), Positives = 213/366 (58%), Gaps = 11/366 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F+D  L P V+ A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPLVLEALEKKGFHHCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY 70

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT   K   +   PR LI+ PTRELA Q+  + E   ++  L + L  GG  ++ Q K 
Sbjct: 71  LLTHQAKQDRQTNQPRALIMAPTRELAVQIHSDAEPLTQSTGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILVGTTGRLIDYAKQNYIDLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAVD 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEDIWGHLATDGHRVGLLTGDVAQKKRLRILDDFTKGN 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYAL 366

Query: 356 HIDAIE 361
           ++ AIE
Sbjct: 367 NLPAIE 372


>gi|148272372|ref|YP_001221933.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830302|emb|CAN01236.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 509

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 131/365 (35%), Positives = 208/365 (56%), Gaps = 3/365 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   +V A+ D G ++P PIQ +TIPL L   D+ G A+TGTGKT  F LP++
Sbjct: 1   MTFTELNIDEDMVQALADHGILEPFPIQEQTIPLALSGQDIIGQAKTGTGKTFGFGLPLI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  G       + L++ PTRELA QV ++ +   K+   TV  + GG  +E Q ++L+
Sbjct: 61  QRL--GLTPEPGVQALVVVPTRELAVQVTEDLQIATKHRATTVVSIYGGKAYEGQIEQLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   +  L + N+  +V+DEAD+MLD+GF+  I+ + +  P  R T
Sbjct: 119 AGAQIVVGTPGRLLDLVGQRLLSLQNVREMVLDEADKMLDLGFLSDIEKLFAQTPAVRHT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +  ++  F+  P  I    P           +   A    K  ++ ++LQ
Sbjct: 179 MLFSATMPGPIVALARRFMTKPIHIRATDPDEGLMQANIRHLVYRAHNMDKDEVIGRILQ 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   K  +IF   K+    L   L  +GF+  A+HG+++Q  R + ++ FK G   +++
Sbjct: 239 AEGRGKT-VIFTRTKRAAARLVEELNDRGFNAAAVHGDLNQEQRERAMAAFKAGKKDILI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV HV N  +P   + Y+HR+GRTGRAG+ G A T V  +D+     I
Sbjct: 298 ATDVAARGIDVLDVTHVINHTIPEDDKAYLHRVGRTGRAGKTGIAVTFVDWDDLHKWALI 357

Query: 361 EKLIE 365
            + +E
Sbjct: 358 NRALE 362


>gi|67475258|ref|XP_653330.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56470272|gb|EAL47944.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 578

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 142/399 (35%), Positives = 222/399 (55%), Gaps = 21/399 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L  ++   +  AG+  P P+Q  TIP+VL + D+   AQTG+GKTA+F+ P+++ 
Sbjct: 133 FYDIDLGEELDHNIFKAGFYHPMPVQKATIPIVLDKRDLMSCAQTGSGKTAAFLFPIISD 192

Query: 63  LEKGRARVR----------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
           + K     R           P  LIL PTREL  Q+ +   ++ ++  +    + GG   
Sbjct: 193 ILKNPPMPRQSNFSHRVTVFPVALILAPTRELGQQIYEEAVRFTEDTPIRSVCVYGGSDS 252

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNI- 170
             Q +++ +G D+L+ TPGR+L +F   K++ ++++  L+ DEADRMLDMGF P I+ I 
Sbjct: 253 YTQIQEMGKGCDILVATPGRLL-YFTEKKIVSLSSVRYLIFDEADRMLDMGFEPQIREIC 311

Query: 171 --TSLVPF-TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
               + P   RQTL+FSAT   ++Q+++ +FL +   I V    ST E+I+   +    +
Sbjct: 312 EDNEMPPVGKRQTLMFSATFPKQIQRLAADFLDDYVFITVGRAGSTVESIQQIILWVEEE 371

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             K+ A+L  L +     +  +IF   K+    L + L   G+ V +IHG+  Q  R   
Sbjct: 372 I-KQEAILDVLGEFAGKGQKTVIFVETKRGADILENYLYDHGYKVDSIHGDRSQADRDFS 430

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L  FKE  IQL+VA+D+A+RGLDIPD+  V N+D+PN  E+Y+HR+GRTGRAG+ G A T
Sbjct: 431 LKRFKENVIQLLVATDVASRGLDIPDIEVVINYDMPNEIESYVHRVGRTGRAGKKGTAIT 490

Query: 348 LVAKEDIKHIDAIEKLIEKK----VDWLNGDLSSLNPPL 382
            + ++    I  +  L+E+      DWL         P 
Sbjct: 491 FINEKTQNLIPPLVSLLEEAKQTIPDWLEEKAQEYRKPF 529


>gi|255565933|ref|XP_002523955.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223536802|gb|EEF38442.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 564

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 125/372 (33%), Positives = 205/372 (55%), Gaps = 11/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D+ L+  ++  +   GY +PTPIQ++ + + L   D+   A+TG+GKTA+F +PM+  
Sbjct: 123 FEDMCLNQNIMKDIAYHGYTRPTPIQVQAMTVSLSGRDLLACAETGSGKTAAFTIPMIQH 182

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
            + +    R   P  L+L PTRELA Q+    + + ++ +    A+++GG     Q  +L
Sbjct: 183 CLAQSPIRRGDGPLALVLAPTRELAQQIEKEVKCFSRSLDSFRTAIVVGGTNIADQRSEL 242

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR +DH  +G   ++ I  +V+DEADRMLDMGF P I+ +   +P   Q
Sbjct: 243 RAGVDIMVATPGRFIDHLQQGNTSLSRISFIVLDEADRMLDMGFEPQIREVLHNLPERHQ 302

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM +E++ +++ +L  P +++V   S     +              C LL  L+
Sbjct: 303 TLLFSATMPEEIETLAQEYLTTPVQVKVGKVSGLTANVSQVLKKVSESEKIDC-LLGLLV 361

Query: 240 QSQDTMKNG-------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           +     +         ++F ++K     +  +L  QG    A+HG   Q  R   L +F+
Sbjct: 362 EDASQAERADHPFPLTVVFVDRKARCDEVAEALVAQGLRAVALHGGRSQNEREAALHDFR 421

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G+  ++VA+D+A+RGLD+  V HV N D+P   E+Y+HR+GRTGRAG  G+A +     
Sbjct: 422 SGSTDILVATDVASRGLDVTGVTHVINLDLPKTMEDYVHRVGRTGRAGSAGQATSFYTDR 481

Query: 353 DIKHIDAIEKLI 364
           D+  +  I+K I
Sbjct: 482 DLFLVAQIKKAI 493


>gi|320583085|gb|EFW97301.1| ATP-dependent RNA helicase DED1 [Pichia angusta DL-1]
          Length = 2471

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 143/366 (39%), Positives = 205/366 (56%), Gaps = 19/366 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    L P +V  +  A + KPTP+Q  +IP+V    D+   AQTG+GKT  F+ P+L+
Sbjct: 136 EFTSPPLDPLLVENIKQARFTKPTPVQKYSIPIVANGRDLMACAQTGSGKTGGFLFPVLS 195

Query: 62  -ILEKGRA-----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
              + G             R   P  L+L PTREL +Q+ +   K+     +   ++ GG
Sbjct: 196 ESFKHGPTESSQTDNAFDRRKAHPTALVLAPTRELVSQIYEEARKFSYRSWVRPVVVYGG 255

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q  +L++G D+L+ TPGR+ D   RGK+ + NI+ LV+DEADRMLDMGF   I++
Sbjct: 256 AEVYLQMDQLKQGCDLLVATPGRLNDLLERGKISLKNIKYLVLDEADRMLDMGFEIQIRH 315

Query: 170 ITSLV----PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I        P  RQTL+FSAT   E+Q ++++FL N   + V    ST+E I    +   
Sbjct: 316 IIQGCDMPPPGERQTLMFSATFPKEIQLMAKDFLHNYIFLSVGRVGSTSENITQRILYVE 375

Query: 226 AQYSKKCALLQQLLQSQDTMKNGI--IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
               KK +LL  L  ++DT+ NG+  IF   KK    L   L  Q F   +IHG+  Q  
Sbjct: 376 DD-EKKSSLLDILTSTEDTLANGLTLIFVETKKMADILSDFLINQDFPATSIHGDRSQYE 434

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L +F+ G   ++VA+ +AARGLDIP+V HV N+D+PN  ++Y+HRIGRTGRAG  G
Sbjct: 435 RERALESFRTGRTPILVATAVAARGLDIPNVTHVVNYDLPNDIDDYVHRIGRTGRAGNTG 494

Query: 344 KAFTLV 349
            A   V
Sbjct: 495 VATAFV 500


>gi|238753931|ref|ZP_04615291.1| ATP-dependent RNA helicase srmB [Yersinia ruckeri ATCC 29473]
 gi|238707919|gb|EEQ00277.1| ATP-dependent RNA helicase srmB [Yersinia ruckeri ATCC 29473]
          Length = 437

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/354 (38%), Positives = 204/354 (57%), Gaps = 4/354 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP L 
Sbjct: 5   NFSELDLDDRLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K+  L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I +   + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQT 184

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+  E +++ +E  L+ P  +E +      + I+  +         K ALL  LL
Sbjct: 185 LLFSATLEGEAIREFAERILEEPVELEADPSRRERKKIQQWYYRA-DDIEHKTALLVHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  K+ IIF   ++ V  L   L + G +   + G + Q  R + +    +G + ++
Sbjct: 244 KQPDVQKS-IIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+A+RGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D
Sbjct: 303 VATDIASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHD 356


>gi|146417127|ref|XP_001484533.1| hypothetical protein PGUG_03914 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 705

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 144/384 (37%), Positives = 217/384 (56%), Gaps = 16/384 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  V + GY  P+ IQ  +IP+ +   D+   A TG+GKTA++++P++  
Sbjct: 200 FQALQLSRPLLKGVGNLGYTVPSAIQAASIPIAMMGKDIVAGAVTGSGKTAAYLIPIIER 259

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L    A V   R ++L PTRELA QV D  +K G+   NL   L +GG+    Q ++L+ 
Sbjct: 260 LIYKPAAVSATRVIVLTPTRELAIQVCDVGKKLGQFVANLNFGLAVGGLNLRQQEQQLKS 319

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQ 179
             D+++ TPGR++DH  N     + N+E+LV+DEADRML+ GF   +  I  L+P   RQ
Sbjct: 320 RPDIVVATPGRLIDHIRNSPSFSIENLEVLVMDEADRMLEEGFQVELTEILELIPKHKRQ 379

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  ++Q + +  L  P RI VN P   A  +   FV    +   K ALL  LL
Sbjct: 380 TMLFSATMNTKIQDLIQLSLDKPVRIMVNPPKQAASKLVQEFVRIRKREHLKPALLYHLL 439

Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  D  +    ++F ++K+    L   L   G  V  +HG++ Q  R++ + +F+   + 
Sbjct: 440 RLVDPQQQNRIVVFVSRKEMAHRLRIVLGLLGMKVLELHGSLTQEQRLQSVKDFRSLAVP 499

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ +DLAARGLDIP +  V NFD+P   E Y+HR+GRT RAGR G++ T V + +    
Sbjct: 500 VLICTDLAARGLDIPKIEIVINFDMPKTHEIYLHRVGRTARAGREGRSITFVGESNQDRS 559

Query: 358 ---DAIEKLIEKK--------VDW 370
              DAI+ L E+K        VDW
Sbjct: 560 IVKDAIKSLEEQKNGKAVSRTVDW 583


>gi|307545623|ref|YP_003898102.1| ATP-dependent RNA helicase RhlB [Halomonas elongata DSM 2581]
 gi|307217647|emb|CBV42917.1| ATP-dependent RNA helicase RhlB [Halomonas elongata DSM 2581]
          Length = 474

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/372 (37%), Positives = 210/372 (56%), Gaps = 9/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L   ++ A+   G+   TPIQ + +   L   DV G AQTGTGKTA+F++ +L  
Sbjct: 96  FHDFDLPLPLMRAIHAQGFEYCTPIQAEALTHTLLGGDVVGKAQTGTGKTAAFLISILAY 155

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +  A    +   PR LI+ PTRELA Q+  + +   +  NL VA ++GG+ ++ Q   
Sbjct: 156 FLEEEAPDGQKPGAPRALIVAPTRELALQIEKDAKALARFTNLNVASVVGGMDYQKQRDG 215

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176
           L +  D+L+ TPGR+LD   +  + +  +E+LV+DEADRML MGFIP ++ I    P   
Sbjct: 216 LGKKLDLLVATPGRLLDFHQKRDVDLTQVEVLVLDEADRMLSMGFIPDVKRIIRHTPKKE 275

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT LFSAT TD++  ++  +   P  +++      A  I+            K  LL 
Sbjct: 276 ERQTFLFSATFTDDILNLAGQWTHEPAHVDIEVTVDNAADIDQRVY--LVSDDDKERLLV 333

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LLQ Q++    ++F N++  V  L   L K   +V  + G++ Q  R++ L  F+EG I
Sbjct: 334 KLLQ-QESFDRVMVFGNRRDLVRKLDGLLRKADINVAMLSGDVPQNQRIRTLEQFREGEI 392

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+A RG+ I DV HV N+ +P   E+Y+HRIGRTGRAG  G + + V +ED   
Sbjct: 393 QVLVATDVAGRGIHIEDVSHVINYTLPEDPEDYVHRIGRTGRAGAKGVSISFVGEEDAFS 452

Query: 357 IDAIEKLIEKKV 368
           +  IE+ I  K+
Sbjct: 453 LPEIERFINDKL 464


>gi|307202009|gb|EFN81574.1| Probable ATP-dependent RNA helicase DDX17 [Harpegnathos saltator]
          Length = 724

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 156/454 (34%), Positives = 239/454 (52%), Gaps = 31/454 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F +      V+  +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP  + 
Sbjct: 110 FEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPATVH 169

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I  + R +R   P  LIL PTRELA Q+      +G +  +    + GG P   Q + LE
Sbjct: 170 INHQPRLSRGDGPIVLILAPTRELAQQIQTVARDFGSSSCIRNTCIFGGSPKGPQARDLE 229

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 230 RGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 289

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALL 235
           L++SAT   E+Q ++E+FL +  +I + + +  A     + +E C      Q  +K   L
Sbjct: 290 LMWSATWPKEVQALAEDFLTDYIQINIGSLTLAANHNIRQIVEIC------QEHEKETKL 343

Query: 236 QQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            QLL+   T +    IIF   KK V ++  +++++G+S  +IHG+  Q  R  +LS F+ 
Sbjct: 344 SQLLREIGTERGSKMIIFVETKKKVDDITKAIKREGWSAISIHGDKSQPERDYVLSEFRN 403

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+D+AARGLD+ DV +V NFD PN +E+YIHRIGRTGR    G A+      +
Sbjct: 404 GKTMILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNN 463

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL-----NPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
            +    +  ++E+    +N  L+ +     N   +      H    K+N     S G  R
Sbjct: 464 ARQAKELIAVLEEAGQAINPQLADMANSIRNQYGKGRQRWSHGRGNKDN----NSHGSPR 519

Query: 409 RK-----KNYSSQKSHIPLKESEKISKLQQDIQE 437
                   N+ SQ  HIP + ++ +   QQ  QE
Sbjct: 520 NNISPTISNWQSQ--HIPQQMNQHLHHSQQANQE 551


>gi|307173398|gb|EFN64357.1| Probable ATP-dependent RNA helicase DDX5 [Camponotus floridanus]
          Length = 639

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 137/371 (36%), Positives = 212/371 (57%), Gaps = 12/371 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +    P V+  +   GY +PTPIQ +  P+ L   D+  IAQTG+GKT  ++LP +  
Sbjct: 140 FEEGNFPPYVMEGIRRQGYSQPTPIQAQGWPIALSGRDLVAIAQTGSGKTLGYILPAIVH 199

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+ + R +    P  L+L PTRELA Q+ +    +G+   +    + GG P   Q   LE
Sbjct: 200 IIHQPRLSNGDGPIVLVLAPTRELAQQIQEVANCFGETAAVRNTCIFGGAPKGPQAHDLE 259

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 260 RGIEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 319

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALL 235
           L++SAT   E++ ++E+FL +   + + + + +A     + I+ C    Y + SK   LL
Sbjct: 320 LMWSATWPKEVRALAEDFLTDYVHLNIGSLTLSANHNITQIIDVCH--EYEKDSKLYRLL 377

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q++   ++     IIF   K+ V ++  ++ + G+   +IHG+ +Q+ R  +L  F+ G 
Sbjct: 378 QEIGTEKENKT--IIFVETKRKVDDITRNIRRDGWQAVSIHGDKNQQERDHVLQEFRSGR 435

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+D+AARGLD+ DV +V NFD P+ +E+YIHRIGRTGR  + G A+      ++K
Sbjct: 436 APILVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGRRRQTGTAYAFFTSHNMK 495

Query: 356 HI-DAIEKLIE 365
           H  D IE L E
Sbjct: 496 HAGDLIEVLRE 506


>gi|115373430|ref|ZP_01460728.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|310822521|ref|YP_003954879.1| ATP-independent RNA helicase dbpa [Stigmatella aurantiaca DW4/3-1]
 gi|115369596|gb|EAU68533.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|309395593|gb|ADO73052.1| ATP-independent RNA helicase DbpA [Stigmatella aurantiaca DW4/3-1]
          Length = 459

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 146/363 (40%), Positives = 215/363 (59%), Gaps = 8/363 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDFA L LSP ++  + + G+   TPIQ ++IP++LQ  D+ G AQTG+GKTA+F LP+L
Sbjct: 1   MDFAGLALSPPLLQVLAELGFTTATPIQAQSIPVLLQGRDLVGQAQTGSGKTAAFALPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             ++  R R+   + L+L PTREL AQVA    + G+    L V +L GG P   Q   L
Sbjct: 61  EKVQPARRRL---QALVLCPTRELCAQVAGEIRRLGRRLPGLQVLVLSGGQPIRPQLDAL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GA + + TPGR+LD  +R  L    +  +V+DEADRMLDMGF   ++ I   VP +RQ
Sbjct: 118 GKGAHIAVGTPGRVLDLLDREALDTGQLATVVLDEADRMLDMGFREDMERILGAVPPSRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT    ++ +S  F + P R+ V       +  + CF  T   + K   LL+ L 
Sbjct: 178 TVLFSATFPPTIEAMSRAFQKEPARVTVAEAGVAPDIQQLCF--TCGPHEKTQLLLRILR 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q    + I+FCN K  V  L   L   G S   + G+++Q  R ++++ F+  + +++
Sbjct: 236 HYQPA--SAIVFCNLKATVTELTQMLVDAGVSADGLQGDLEQSDRDRVMAKFRNHSTRVL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A RG+D+  +  V NFDVP++ E Y+HRIGRTGRAGR G A +L    D + I+ 
Sbjct: 294 VATDVAGRGIDVEALDAVINFDVPSQPEPYVHRIGRTGRAGRRGLAISLATPRDTQKIED 353

Query: 360 IEK 362
           IE+
Sbjct: 354 IEQ 356


>gi|331646674|ref|ZP_08347777.1| ATP-independent RNA helicase DbpA [Escherichia coli M605]
 gi|330911207|gb|EGH39717.1| ATP-dependent RNA helicase DbpA [Escherichia coli AA86]
 gi|331045426|gb|EGI17553.1| ATP-independent RNA helicase DbpA [Escherichia coli M605]
          Length = 457

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 219/377 (58%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+  ++C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W     +S   PLE
Sbjct: 363 KLNWQTPPANSSIVPLE 379


>gi|239818170|ref|YP_002947080.1| ATP-dependent RNA helicase DbpA [Variovorax paradoxus S110]
 gi|239804747|gb|ACS21814.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
          Length = 476

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 141/396 (35%), Positives = 215/396 (54%), Gaps = 18/396 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L LSP+++  +   GY + T IQ   +P  L   D+   A+TG+GKTA+F L +L+ 
Sbjct: 17  FATLALSPQMLANLTQLGYTQMTAIQAAALPPALLGKDLIAQAKTGSGKTAAFALALLSN 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L   R  ++    ++L PTRELA QV     +  +   N+ V  L GG+    Q   LE 
Sbjct: 77  LNPRRFAIQ---AMVLCPTRELADQVTTEIRRLARAEENIKVVTLCGGVALRGQIASLEH 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  R  L +  +  LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 134 GAHIVVGTPGRIMDHLERENLNLEALNTLVLDEADRMLDMGFFDDIVKVARQCPKERQTL 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K+++ F++NP++I V      ++  +  +    ++     +LL    + 
Sbjct: 194 LFSATYPEGIAKLAQQFMKNPEQITVQAQHEGSKIRQRWYQVKESERLHAVSLLLDHFRP 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+     FCN K+   +L   L+ QGFS  A+ G ++QR R ++L  F   +  ++VA
Sbjct: 254 VSTLA----FCNTKQQCRDLVEVLQGQGFSALALFGELEQRERDQVLVQFANRSCSVLVA 309

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK----AFTLVAKEDIKHI 357
           +D+AARGLDI  +  V N DV   AE +IHRIGRTGR G+ G     A  L + +++  +
Sbjct: 310 TDVAARGLDIAQLEAVINVDVTPDAEIHIHRIGRTGRVGQQGGAEGLALNLASMDEMGSV 369

Query: 358 DAIEKLIEKKVDW------LNGDLSSLNPPLEKIDI 387
             IE+L  ++ +W           + L PP+  + I
Sbjct: 370 GKIEQLQGRESEWHPLAELTPAQGAPLAPPMATLQI 405


>gi|159463584|ref|XP_001690022.1| DEAD-box RNA helicase [Chlamydomonas reinhardtii]
 gi|158284010|gb|EDP09760.1| DEAD-box RNA helicase [Chlamydomonas reinhardtii]
          Length = 513

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 131/364 (35%), Positives = 207/364 (56%), Gaps = 21/364 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +      V+  VL AG+ +PTPIQ +  P+ L   D+ G+A+TG+GKT +++LP +  
Sbjct: 111 FEEASFPEYVLEEVLRAGFKEPTPIQCQGWPMALLGRDLIGLAETGSGKTLAYLLPAVVH 170

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L+ G      P  L+L PTRELA Q+    +++G +  +   ++ GG P   Q 
Sbjct: 171 INAQPYLQSGDG----PIVLVLAPTRELAVQIQQECQRFGASSRIKNTVVYGGAPKGPQA 226

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  G +++I TPGR++D  +     +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 227 RDLRGGVEIVIATPGRLIDMLDSRITNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 286

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKK 231
            RQTLL+SAT   E+Q ++ +FL++P ++ + +P   A     + +E   V  +A+Y + 
Sbjct: 287 DRQTLLWSATWPKEVQAIARDFLKDPYQVIIGSPDLKANHNIRQVVE--MVEGFAKYPR- 343

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L++LL  +   +  +IF   K+    L   L   G+    +HG+  Q+ R  +L  F
Sbjct: 344 ---LRKLLDGEMDGRRILIFVETKRGCDELVRQLRTDGYPALGLHGDKSQQERDWVLQEF 400

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K GT  +M+A+D+AARGLD+ D+  V N+D+P  AE+Y+HRIGRTGRAG  G A++    
Sbjct: 401 KNGTHPIMLATDVAARGLDVKDIKVVVNYDMPKTAEDYVHRIGRTGRAGATGTAYSFFTN 460

Query: 352 EDIK 355
            D +
Sbjct: 461 GDAR 464


>gi|162418242|ref|YP_001605106.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Angola]
 gi|165926343|ref|ZP_02222175.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165939710|ref|ZP_02228253.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166009474|ref|ZP_02230372.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166213643|ref|ZP_02239678.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167402073|ref|ZP_02307552.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167420915|ref|ZP_02312668.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425993|ref|ZP_02317746.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|270488784|ref|ZP_06205858.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294505532|ref|YP_003569594.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Z176003]
 gi|162351057|gb|ABX85005.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Angola]
 gi|165912400|gb|EDR31034.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165921867|gb|EDR39064.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165991396|gb|EDR43697.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166205316|gb|EDR49796.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961044|gb|EDR57065.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167048547|gb|EDR59955.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055141|gb|EDR64940.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|262363598|gb|ACY60319.1| ATP-dependent RNA helicase RhlB [Yersinia pestis D106004]
 gi|262367526|gb|ACY64083.1| ATP-dependent RNA helicase RhlB [Yersinia pestis D182038]
 gi|270337288|gb|EFA48065.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294355991|gb|ADE66332.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Z176003]
          Length = 423

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 142/367 (38%), Positives = 213/367 (58%), Gaps = 13/367 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P VV A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 6   FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY 65

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     E+GR +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 66  LLSHPAEEGR-QTNQPRALIMAPTRELAVQIHSDAESLSQVTGLKLGLAYGGDGYDKQLK 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 125 VLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV 184

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234
             R  +LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  L
Sbjct: 185 DKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIKEELF---YPSNEEKMRL 241

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL +F +G
Sbjct: 242 LQTLIE-EEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKG 300

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E  
Sbjct: 301 DLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYA 360

Query: 355 KHIDAIE 361
            ++ AIE
Sbjct: 361 LNLPAIE 367


>gi|320195643|gb|EFW70268.1| ATP-dependent RNA helicase DbpA [Escherichia coli WV_060327]
          Length = 457

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 219/377 (58%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+  ++C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W     +S   PLE
Sbjct: 363 KLNWQTPPANSSIVPLE 379


>gi|160331647|ref|XP_001712530.1| rrp3 [Hemiselmis andersenii]
 gi|159765979|gb|ABW98205.1| rrp3 [Hemiselmis andersenii]
          Length = 398

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 142/388 (36%), Positives = 223/388 (57%), Gaps = 29/388 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAG-YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
             F  LG+S K +C +  A  +  PT IQ K IP  L   D+ G AQTG+GKT +++LP+
Sbjct: 2   FSFDKLGIS-KELCRICKANNFFIPTKIQAKVIPHALNGRDIIGYAQTGSGKTIAYLLPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  L K +       ++IL P+RELA Q+A  FE +G  + + + +L+GG+   +Q   L
Sbjct: 61  IQNLVKKKTAFF---SIILVPSRELAFQIASYFEAFGNIFGIKIVVLVGGLENFSQKALL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNI---EILVIDEADRMLDMGFIPYIQNITSLVPF 176
                +LICTPGR+++H    K L N I   EILVIDEADR+  + F      I S +P 
Sbjct: 118 SLNPHILICTPGRLIEHLE--KFLKNKIKKLEILVIDEADRLFQLDFKKEFSIIFSELPK 175

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL- 235
            +Q+L FSATM+  L+ + +N ++NP +I++N      +T++  ++    Q  K C  + 
Sbjct: 176 NKQSLFFSATMSLNLENLQKNNMKNPVKIQINRKYKVVKTLQQNYIFI-PQKLKDCYFIY 234

Query: 236 -------QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
                    +L   DT K     C +KK ++      +  GF+   +HG ++Q  R++IL
Sbjct: 235 LCNEFNGSSILVFVDTQK-----CAEKKTLLA-----KFLGFNAEYLHGGMNQNKRLEIL 284

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             F+ G I++++A+DLA+RGLDIP+V  V N+D+P+ A+ Y+HR+GRT RAG+ G+   +
Sbjct: 285 QKFRFGKIKILIATDLASRGLDIPNVDLVLNYDLPHLAKEYLHRVGRTARAGKSGRTINI 344

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
           V + DI     IE L+++K   LN  L+
Sbjct: 345 VTQYDIHLCQKIETLVQQKFILLNFKLA 372


>gi|149065924|gb|EDM15797.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_a [Rattus
           norvegicus]
          Length = 652

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 214/381 (56%), Gaps = 20/381 (5%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 100 PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 159

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 160 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQ 237
           +SAT   E+++++E+FL++  +I V     +A     + ++ C  +   +  K   L+++
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMES--EKDHKLIQLMEE 333

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   
Sbjct: 334 IMAEKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAP 391

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K  
Sbjct: 392 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 451

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K++E+    +N  L  L
Sbjct: 452 RELIKVLEEANQAINPKLMQL 472


>gi|113460320|ref|YP_718381.1| ATP-dependent RNA helicase RhlB [Haemophilus somnus 129PT]
 gi|122945181|sp|Q0I1X0|RHLB_HAES1 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|112822363|gb|ABI24452.1| ATP-dependent RNA helicase, DEAD box family [Haemophilus somnus
           129PT]
          Length = 419

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/367 (37%), Positives = 218/367 (59%), Gaps = 9/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+DL L   V  A+ + G+   TPIQ  ++P+ L+  D+ G AQTGTGKT +F+      
Sbjct: 11  FSDLALHRSVQQAIKEKGFEFCTPIQALSLPITLKGQDIAGQAQTGTGKTIAFLTATFHH 70

Query: 62  ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L+K        PR LIL PTREL  Q+A++     +   L   L  GG  ++ Q K ++
Sbjct: 71  LLQKNNINSSEQPRALILAPTRELVVQIANDANFLVQATGLKTGLAYGGEGYDKQLKVID 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ- 179
           +G D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P  +Q 
Sbjct: 131 QGIDILIGTTGRVIDYVKQGIIRLDYIQVVVLDEADRMFDLGFIRDIRYLLRKCPVPQQR 190

Query: 180 -TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237
            T+LFSAT++ ++++++   + +P+ +E+     T   I E  F   Y     K ALL  
Sbjct: 191 LTMLFSATLSYKVRELAFEHMNDPQYVEIEPLQKTGHRIREELF---YPSNQDKMALLMT 247

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ ++  +  IIF N K     +   L   G  V  + G++ Q+ R+ +L  F +GT+ 
Sbjct: 248 LLE-EEWPERCIIFSNTKHRCEEIWGYLSADGHRVGLLTGDVMQKKRLSLLKQFTDGTLD 306

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IPDV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 307 ILVATDVAARGLHIPDVTHVFNYDLPDDCEDYVHRIGRTGRAGESGISISFACEEYAINL 366

Query: 358 DAIEKLI 364
            AIE+ I
Sbjct: 367 PAIEEYI 373


>gi|45442928|ref|NP_994467.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Microtus
           str. 91001]
 gi|45437795|gb|AAS63344.1| putative DEAD-box helicase [Yersinia pestis biovar Microtus str.
           91001]
          Length = 422

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 142/367 (38%), Positives = 213/367 (58%), Gaps = 13/367 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P VV A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY 70

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     E+GR +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 71  LLSHPAEEGR-QTNQPRALIMAPTRELAVQIHSDAESLSQVTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV 189

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234
             R  +LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  L
Sbjct: 190 DKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIKEELF---YPSNEEKMRL 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL +F +G
Sbjct: 247 LQTLIE-EEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E  
Sbjct: 306 DLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYA 365

Query: 355 KHIDAIE 361
            ++ AIE
Sbjct: 366 LNLPAIE 372


>gi|332308441|ref|YP_004436292.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175770|gb|AEE25024.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 421

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 152/422 (36%), Positives = 244/422 (57%), Gaps = 25/422 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FADL ++ +VV A+  A +   TPIQ  ++P +L+ +D+ G AQTGTGKT +F++     
Sbjct: 11  FADLPINEQVVKALSAANFSHCTPIQALSLPPLLEGNDIAGQAQTGTGKTIAFLVATFHY 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L   +   + PR +I+ PTRELA Q+ ++ E   ++  L++ L+ GG  +++Q +KLE 
Sbjct: 71  LLSNPQPTKKQPRAIIMAPTRELAVQIFNDAELLSQHTGLSLGLIYGGEGYQSQREKLEE 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTRQ 179
           G D++I T GRI+D++ +    +  I++ V+DEADRM D+GFI  I+ + + +P    R 
Sbjct: 131 GVDIIIGTTGRIIDYYKQNIFSLAGIQVAVLDEADRMFDLGFIKDIRYLFNRMPNPSERL 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQL 238
           ++LFSAT++  +Q+++   + NP  ++V     T   I E  F   Y     K ALL  L
Sbjct: 191 SMLFSATLSYRVQELAYEHMNNPTHVQVEPERKTGTRIKEELF---YPSDEDKMALLLSL 247

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ +   K  I+F N K +   +   L+  G  V  + G++ Q  R+KIL +F  G + +
Sbjct: 248 MEEEWPDK-AIVFANTKHSCEKVSDWLQADGHRVGLLSGDVPQNKRLKILEDFTSGKLDI 306

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGL IP V HVFN+D+P+ AE+Y+HRIGRTGRAG+ G + +   +    ++ 
Sbjct: 307 LVATDVAARGLHIPMVSHVFNYDLPDDAEDYVHRIGRTGRAGQSGSSISFACERYALNLP 366

Query: 359 AIEKLIEKKV-------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK--STGFDRR 409
           AIE  IE  +       D L  D++   P        +H    +N   PQK  S+G   R
Sbjct: 367 AIETYIEHAIPVTEYHADALIRDVTPPKP--------RHKKRMQNGRNPQKRHSSGSRNR 418

Query: 410 KK 411
           +K
Sbjct: 419 RK 420


>gi|328469481|gb|EGF40427.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus 10329]
          Length = 412

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 212/369 (57%), Gaps = 11/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS +++ A L   + KPT IQ   IP +L   D+  +A TG+GKT ++ LP+L
Sbjct: 1   MPFSTLSLSSELIHA-LPKDFKKPTDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +    + LIL PTRELA QV++   + G+   L    L GG+  E Q + L 
Sbjct: 60  EKLSVNPEQ----KALILVPTRELAMQVSEAINQVGQVLELNAVCLCGGVDKEQQQQALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ T GR++D  N G L ++N+  LV+DEADR+LDMGF P +QNI  L+   RQT
Sbjct: 116 TNPHILVATTGRLVDLANNG-LDLSNVHYLVLDEADRLLDMGFWPDVQNIAGLISNQRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLL 239
            +FSAT +DEL+  ++  +Q PK++  +  +ST + I E  ++      SK  AL++  L
Sbjct: 175 AMFSATFSDELKGKAKLLMQAPKQVAAHQENSTNQDIVETLYLVNKG--SKTKALIE--L 230

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++     ++F   K+N   L   L K G S  A+HGN  Q  R   L+ FK G +Q++
Sbjct: 231 IQKNAWTQALVFIGAKENADGLAKKLNKAGISANALHGNKSQDEREDALAQFKSGQMQVL 290

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG  G A +LV   ++  + A
Sbjct: 291 IATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVAMSLVCHGEMDALSA 350

Query: 360 IEKLIEKKV 368
           I  L ++ +
Sbjct: 351 IRHLTQRAL 359


>gi|293409738|ref|ZP_06653314.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470206|gb|EFF12690.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 457

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 219/377 (58%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W    ++S   PLE
Sbjct: 363 KLNWQTPPVNSSIVPLE 379


>gi|291389880|ref|XP_002711450.1| PREDICTED: DEAD box polypeptide 17 [Oryctolagus cuniculus]
          Length = 835

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 214/381 (56%), Gaps = 20/381 (5%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 283 PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 342

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 343 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 398

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 399 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 458

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQ 237
           +SAT   E+++++E+FL++  +I V     +A     + ++ C  +   +  K   L+++
Sbjct: 459 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESE--KDHKLIQLMEE 516

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   
Sbjct: 517 IMAEKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAP 574

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K  
Sbjct: 575 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 634

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K++E+    +N  L  L
Sbjct: 635 RELIKVLEEANQAINPKLMQL 655


>gi|332139978|ref|YP_004425716.1| ATP-dependent RNA helicase RhlB [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550000|gb|AEA96718.1| ATP-dependent RNA helicase RhlB [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 429

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 140/383 (36%), Positives = 229/383 (59%), Gaps = 10/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F+DL ++ KVV A+  A +   TPIQ   +P +L+ HD+ G AQTGTGKT +F++     
Sbjct: 10  FSDLPINGKVVDALAAANFSHCTPIQALALPPLLEGHDIAGQAQTGTGKTIAFLVATFHY 69

Query: 62  ILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +L K      ++   PR +I+ PTRELA Q+ ++ +   ++  L++ L+ GG  +++Q +
Sbjct: 70  LLSKAENADNSKSNGPRAIIMAPTRELAVQIYNDAKLLSEHTGLSLGLIYGGEGYQSQRE 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D++I T GRILD++ +    + NI++ V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 TLEEGVDIIIGTTGRILDYYKQNVFSLKNIQVAVLDEADRMFDLGFIKDIRFLFRRMPPA 189

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R ++LFSAT++  +Q+++   + NP  ++V    +TA  +       Y     K  LL
Sbjct: 190 GERLSMLFSATLSYRVQELAYEHMNNPTHVQVAPEQTTATRVSQELF--YPSDDDKMLLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL+ +   K  I+F N K +   +   L   G  V  + G++ Q+ R+ IL +F +G 
Sbjct: 248 LTLLEEEWPEK-AIVFANTKHSCEKVTDWLTADGHRVGLLSGDVPQKKRLGILEDFTKGK 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL I  V HVFN+D+P+ AE+Y+HRIGRTGRAG+ G A +   ++   
Sbjct: 307 LDVLVATDVAARGLHIDAVTHVFNYDLPDDAEDYVHRIGRTGRAGQSGIAISFACEKYAL 366

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
           ++ AIE+ I+  +   + D S+L
Sbjct: 367 NLPAIEQYIQNAIPVTDYDSSAL 389


>gi|238789356|ref|ZP_04633142.1| ATP-dependent RNA helicase rhlB [Yersinia frederiksenii ATCC 33641]
 gi|238722499|gb|EEQ14153.1| ATP-dependent RNA helicase rhlB [Yersinia frederiksenii ATCC 33641]
          Length = 428

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 139/366 (37%), Positives = 212/366 (57%), Gaps = 11/366 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P V+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPLVIEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY 70

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     E+GR +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 71  LLSHPAEEGR-QTNQPRALIMAPTRELAVQIHSDAESLSQMTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV 189

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R  +LFSAT++  +++++   + N + +EV     T   I+      Y    +K  LL
Sbjct: 190 DKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELF--YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL +F +G 
Sbjct: 248 QTLIE-EEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYAL 366

Query: 356 HIDAIE 361
           ++ AIE
Sbjct: 367 NLPAIE 372


>gi|254496850|ref|ZP_05109700.1| ATP-dependent RNA helicase DbpA [Legionella drancourtii LLAP12]
 gi|254353922|gb|EET12607.1| ATP-dependent RNA helicase DbpA [Legionella drancourtii LLAP12]
          Length = 475

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 137/371 (36%), Positives = 213/371 (57%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DLGL   ++  +   GY K TPIQ++++P +L+R DV   A+TG+GKTA+F    L
Sbjct: 18  LSFSDLGLRDTLLTNLASLGYEKMTPIQVQSLPTLLKRIDVIAQAKTGSGKTAAF---GL 74

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           T+L   +      + L+L PTRELA QV+    +  +   N+ V  L GG+PF  Q   L
Sbjct: 75  TLLNHLKVEFFATQALVLCPTRELAEQVSQAIRRLARLLPNVKVLNLSGGMPFTPQLDSL 134

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA +++ TPGRI  H ++  L + ++  LV+DEADRMLDMGF   I+NI    P TRQ
Sbjct: 135 RHGAHIVVGTPGRIQKHLDKNSLSLKHLNTLVLDEADRMLDMGFFDEIKNIIRTCPTTRQ 194

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   E++ +++ F+++P++I +          +H +    A+   K ALL  LL
Sbjct: 195 TLLFSATYPAEIKNLADEFMRDPQKITIEENHDELNIEQHFYEVNNAK--DKFALLNDLL 252

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +IFCN K+    +   L + GFS   ++G+++Q  R   +  F   +  ++
Sbjct: 253 RHHKPTST-LIFCNTKEQTNQVSRQLTQAGFSATMLNGDMEQIDRDLAMIRFGNKSCSIL 311

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++  V N+++      +IHRIGRTGRAG  G  F +    D + +  
Sbjct: 312 VATDVAARGLDIKELPAVVNYELAFDLAVHIHRIGRTGRAGHKGLVFNITTPADAERLCL 371

Query: 360 IEKLIEKKVDW 370
           IE+ + + + W
Sbjct: 372 IEEELGRPITW 382


>gi|332525439|ref|ZP_08401598.1| DEAD/DEAH box helicase-like protein [Rubrivivax benzoatilyticus
           JA2]
 gi|332108707|gb|EGJ09931.1| DEAD/DEAH box helicase-like protein [Rubrivivax benzoatilyticus
           JA2]
          Length = 415

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 208/371 (56%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL+P +  A  + G+  PTP+Q + IP  L   D+   A TG+GKTA++ L ML  
Sbjct: 5   FAALGLTPALQRACAELGFSIPTPVQQQAIPPALDGQDLVARAPTGSGKTAAYALAMLHR 64

Query: 63  LE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKL 119
            +   R   R+ R L+L PTRELA Q         +     + VA++ GG+    Q   L
Sbjct: 65  FDITPRESRRVTRALLLVPTRELAVQAGQTLRAMAREMAEPVKVAVVFGGVSVNPQMMGL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA+V++ TPGR+LD   R  L +  +++LV+DEADR+LD GF   ++ + +L+P  RQ
Sbjct: 125 RGGAEVVVATPGRLLDLVERNALKLGEVQLLVLDEADRLLDDGFADELERVLALLPAERQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQL 238
            LLFSAT    +Q ++   L  P ++ V+  P +    IE    A     +++  LL++L
Sbjct: 185 QLLFSATFPAPVQALATRLLHAPVQVAVDAAPEAGGPEIEQH--AVEVDTAQRTPLLRRL 242

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L + D  +  ++F   +     +   L++ G +  A+HG + Q +R ++L+    G +++
Sbjct: 243 LATHDWPRV-LVFVATRHASEMVAAKLQRAGIAAAALHGELSQGARARVLAELAHGRLRV 301

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+DLAARGL IP +  V N+D+P  A +Y HRIGRT RAG  G+A++ V      H  
Sbjct: 302 VLATDLAARGLHIPALAAVVNYDLPRSAADYTHRIGRTARAGARGEAWSFVTAASEAHFR 361

Query: 359 AIEKLIEKKVD 369
            IEK   ++V+
Sbjct: 362 LIEKRQGRRVE 372


>gi|316979810|gb|EFV62545.1| ATP-dependent RNA helicase DDX42 [Trichinella spiralis]
          Length = 741

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 129/356 (36%), Positives = 211/356 (59%), Gaps = 9/356 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA  G   K++  +    + +PTPIQ + IP+V+   D+ GIA+TG+GKTA+++ P +  
Sbjct: 205 FAHFGFDEKLMSLIRKYEFSQPTPIQAQGIPVVMSGRDIIGIAKTGSGKTAAYLWPAIYH 264

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I ++       P  LI+ PTRELA QV +  +KYGK +++ V    GG     Q+K L 
Sbjct: 265 IISQRHLDEKEGPICLIVVPTRELAIQVYNEAKKYGKYFDIRVVCAYGGGSKWEQSKALA 324

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA+V++CTPGRI+D           +   V+DEADRM D+GF   +++I   +   RQ 
Sbjct: 325 EGAEVVVCTPGRIIDLIKAKATNFERVTYFVLDEADRMFDLGFEAQVRSIADHIRPDRQC 384

Query: 181 LLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           L+FSAT   ++++++ + L NP ++   EV   ++  + I   F +   +++    LL  
Sbjct: 385 LMFSATFKKKIERLARDVLTNPVKVIQGEVGEANADIQQIVEYFASPPTKWT---WLLGN 441

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++   +M   +IF +QK +V  +  +L+ + F VC +HG++ Q  R +++  FK+  + 
Sbjct: 442 LVKFC-SMGKVLIFISQKVHVEEIAENLKAKDFRVCILHGDMFQHERNQVIHAFKKDDVP 500

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +++A+D+AARGLDIP +  V N+DV    + ++HRIGRTGRAG  G A+TLV  +D
Sbjct: 501 ILIATDVAARGLDIPTIKTVINYDVAKDLDTHVHRIGRTGRAGEKGFAYTLVTDKD 556


>gi|291225668|ref|XP_002732809.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 795

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 203/354 (57%), Gaps = 3/354 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G   +++  +  + Y  PTPIQ + +P+ +   D+ GIA+TG+GKTA+F+ P+L  
Sbjct: 259 FGHFGFDEQLMHYIRKSEYSTPTPIQAQGVPIAMSGRDIIGIAKTGSGKTAAFIWPLLIH 318

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +  +K       P  LI  PTREL+ Q+    +K+GK YN+      GG     Q K  +
Sbjct: 319 IMDQKDIKPGDGPIGLICAPTRELSQQIHQECKKFGKAYNIHTVCAYGGGNMWEQTKACQ 378

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G ++L+ TPGR++D   R    +  +  LV+DEADRM DMGF P +++I + V   RQT
Sbjct: 379 AGCEILVATPGRLIDLVKRKATNLERVTFLVLDEADRMFDMGFEPQVRSIANHVRPDRQT 438

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT   ++++++ + L +P R+         E +    V   +    K   L + L 
Sbjct: 439 LLFSATFRKKVERLARDILTDPIRVIQGDLGEANEDVVQ-IVECLSDGPAKWPWLIKRLV 497

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S  T  + +IF  +K N   L  +L+   F +  +HG++DQ  R K+++NFK+  + ++V
Sbjct: 498 SFTTEGSVLIFVTKKANSEELASNLKTHDFDLGLLHGDMDQSERNKVITNFKKQQMPILV 557

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           A+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TLV ++D+
Sbjct: 558 ATDVAARGLDIPSIKTVVNYDVARDIDTHTHRIGRTGRAGIKGTAYTLVTQKDV 611


>gi|26991217|ref|NP_746642.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440]
 gi|24986267|gb|AAN70106.1|AE016650_5 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
           KT2440]
          Length = 440

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 137/370 (37%), Positives = 216/370 (58%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+   L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 61

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    RV + R LIL PTRELA Q     + + +   +   L+ GG  F+ Q   L +
Sbjct: 62  LVDLSGPRVEI-RALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DVLI TPGR+L+  N G L ++++++L++DEADRMLDMGF   ++ +        QTL
Sbjct: 121 VPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQTL 180

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAE-TIEHCFVATYAQYSKKCALLQQLL 239
           LFSAT     L+ +    L++P+ + +N+ S  AE T +    A + Q+ ++ A   Q L
Sbjct: 181 LFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIA---QWL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +T    IIF N +     +   L  +      +HG  DQ+ R   +  FK+G+ +++
Sbjct: 238 LANETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+P   + Y+HR+GRTGRAG  G A +L+   D   + +
Sbjct: 298 VATDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSS 357

Query: 360 IEKLIEKKVD 369
           IE+ ++++ +
Sbjct: 358 IERYLKQQFE 367


>gi|308185825|ref|YP_003929956.1| ATP-dependent RNA helicase dbpA [Pantoea vagans C9-1]
 gi|308056335|gb|ADO08507.1| ATP-dependent RNA helicase dbpA [Pantoea vagans C9-1]
          Length = 460

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 134/355 (37%), Positives = 209/355 (58%), Gaps = 8/355 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY   TP+Q  T+P +LQ  DV   A+TG+GKTA+F + +L  ++  R + +    LIL 
Sbjct: 22  GYTSMTPVQAATLPAILQGRDVRAQAKTGSGKTAAFGIGLLHHIDSTRFQTQ---ALILC 78

Query: 80  PTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QV +   +  +   N+ V  L GG P  AQ   L     +++ TPGRILDH N
Sbjct: 79  PTRELADQVGNVLRQLARFTRNIKVLTLCGGQPMSAQRDSLVHPPHIVVGTPGRILDHIN 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           R  L ++ +  LV+DEADRML+MGF+  ++ I    P +RQTLLFSAT  D +  +S  F
Sbjct: 139 RENLKLDQLSTLVLDEADRMLEMGFLNDMETIIEATPASRQTLLFSATWPDGITAISTRF 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            ++   + V    S   +I+  F    A +++K  LL  LL  +    + ++FCN K+  
Sbjct: 199 QRDALSV-VTEDVSELPSIDQQFF--EASHNEKLGLLIALLSDRQP-SSCVVFCNTKREC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            ++  +L  +  S   +HG+++QR R ++L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 DDVAAALNARDISALPLHGDLEQRDRERVLIRFANGSGRVLVATDVAARGLDIKSLAMVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
           N+ +    E ++HRIGRT RAG HG A +LVA +++    A+E  +++K+ W++ 
Sbjct: 315 NYQLAWDPEVHLHRIGRTARAGEHGVAVSLVAADEMARAHALEDFLQQKLPWVSA 369


>gi|269965010|ref|ZP_06179175.1| ATP-dependent RNA helicase, DEAD box family [Vibrio alginolyticus
           40B]
 gi|269830313|gb|EEZ84538.1| ATP-dependent RNA helicase, DEAD box family [Vibrio alginolyticus
           40B]
          Length = 445

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 142/368 (38%), Positives = 211/368 (57%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS +++ A L   + KPT IQ   IP +L   D+  +A TG+GKT ++ LP+L
Sbjct: 34  MPFSTLSLSSELIHA-LPKDFKKPTDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLL 92

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +    + LIL PTRELA QV++   + G+   L    L GG+  E Q + L 
Sbjct: 93  EKLGVNPEQ----KALILVPTRELAMQVSEAINQVGQVLELNAVCLCGGVDKEQQQQALA 148

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ T GR++D  N G L ++NI  LV+DEADR+LDMGF P +QNI  L+   RQT
Sbjct: 149 TNPHILVATTGRLVDLANNG-LDLSNIHYLVLDEADRLLDMGFWPDVQNIAGLISNQRQT 207

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT +DEL+  ++  +Q PK++  +  +ST + I         + SK  AL++  L 
Sbjct: 208 AMFSATFSDELKGKAKLLMQAPKQVAAHQENSTNQDIAETLYLVN-KGSKTKALIE--LI 264

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     ++F   K+N   L   L K G S  A+HGN  Q  R + L+ FK G IQ+++
Sbjct: 265 QKNAWTKALVFIGAKENADGLAKKLNKAGISTNALHGNKSQDEREEALAQFKSGQIQVLI 324

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG  G A +LV   ++  + AI
Sbjct: 325 ATDLLARGIHIEQLPVVINFELPMYAETYVHRVGRTARAGEQGVAMSLVCHGEMDALSAI 384

Query: 361 EKLIEKKV 368
             L ++ +
Sbjct: 385 RHLTQRAL 392


>gi|327402381|ref|YP_004343219.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327317889|gb|AEA42381.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 410

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/374 (36%), Positives = 222/374 (59%), Gaps = 13/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+  V+ A+   G+   TP+Q  +IP +L  +D+   AQTGTGKTA+F+LP+L
Sbjct: 1   MKFNELGLNDLVLEAIHHMGFENATPVQQLSIPEILANNDLLACAQTGTGKTAAFILPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-----GGIPFEAQ 115
             L  G+    +  TLIL PTRELA Q+    +  G +Y ++V  +       G  +E Q
Sbjct: 61  NKL-TGKEDTSI-NTLILVPTRELAVQIEQEIQ--GLSYFVSVGSMAVYGGGDGTRWEEQ 116

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G D+++ TPG++L H  +G +  + +E LV+DEAD+MLDMGF   I+ I S +P
Sbjct: 117 KSALVEGTDIIVATPGKLLSHIMQGYVDFSQLEHLVLDEADKMLDMGFSDDIERIISHLP 176

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSATM  +++ ++   L NPK I ++     A   +H  +    Q +K    L
Sbjct: 177 KKRQTLLFSATMPSKIKNLASKILINPKEIALSISKPAAGVTQHVVLCFDDQKNKT---L 233

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF-SVCAIHGNIDQRSRMKILSNFKEG 294
             +L+ +    + IIF + K  V  + ++L++ G+ +   +  N++Q  R ++L  F+  
Sbjct: 234 DFILKGRPEYDSIIIFTSAKIKVHEIVYALKRAGYKNTQGVSSNLEQEEREEVLRGFRSK 293

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             +++VA+D+ +RG+DI ++  V N+D P  AE+Y+HRIGRT RA   G+A+TL+  +D+
Sbjct: 294 RTRILVATDVMSRGIDIKEINLVINYDAPRDAEDYVHRIGRTARANTKGEAYTLINPKDM 353

Query: 355 KHIDAIEKLIEKKV 368
             +  IE+LIE ++
Sbjct: 354 PKLARIERLIEMEI 367


>gi|73969117|ref|XP_860802.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 14 [Canis
           familiaris]
          Length = 614

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 214/381 (56%), Gaps = 20/381 (5%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 100 PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 159

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 160 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQ 237
           +SAT   E+++++E+FL++  +I V     +A     + ++ C  +   +  K   L+++
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMES--EKDHKLIQLMEE 333

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   
Sbjct: 334 IMAEKEN--KTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAP 391

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K  
Sbjct: 392 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 451

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K++E+    +N  L  L
Sbjct: 452 RELIKVLEEANQAINPKLMQL 472


>gi|241172335|ref|XP_002410726.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215494955|gb|EEC04596.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 658

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 128/354 (36%), Positives = 208/354 (58%), Gaps = 3/354 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG    ++ A+  A Y +P+PIQ + +P+ +   D+ GIA+TG+GKTA+F+ PMLT 
Sbjct: 184 FAHLGFDEPMLRAIRKAEYTQPSPIQAQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLTH 243

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R  V    P  LIL PTRELA Q+    +++GK Y +      GG     Q+K L+
Sbjct: 244 IMDQRELVEGEGPIGLILAPTRELAQQIYLEAKRFGKVYGVGAICCFGGGSKWEQSKALQ 303

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA++++ TPGR++D        +  +  LV+DEADRM DMGF P +++I   V   RQT
Sbjct: 304 EGAEIVVATPGRMIDLIKMKATNLERVTFLVLDEADRMFDMGFEPQVRSICDHVRPDRQT 363

Query: 181 LLFSATMTDELQKVSENFLQNP-KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           L+FSAT   ++++++ + L +P K ++ +   +  +  +   V      + K   L   L
Sbjct: 364 LMFSATFKRKVERLARDVLTDPVKVVQGDVGEANEDVTQIVLVVPSVPPTTKWNWLTNHL 423

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               ++ + +IF  +K N   L  +L+ +  +V  +HG++DQ  R K++++FK+    ++
Sbjct: 424 VEFTSVGSVLIFVTKKANAEELAANLKTKDHNVALLHGDMDQNDRTKVIASFKKKDFPIL 483

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+AARGLDIP V  V N+D+    + + HR+GRTGRAG  G A+TL+  ++
Sbjct: 484 VATDVAARGLDIPHVRTVVNYDIARDIDTHTHRVGRTGRAGEKGVAYTLITDKE 537


>gi|196001667|ref|XP_002110701.1| hypothetical protein TRIADDRAFT_50105 [Trichoplax adhaerens]
 gi|190586652|gb|EDV26705.1| hypothetical protein TRIADDRAFT_50105 [Trichoplax adhaerens]
          Length = 722

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 132/382 (34%), Positives = 212/382 (55%), Gaps = 34/382 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +++  LS +++  + D  Y +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 295 WSESELSKELLDIISDLKYNEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 354

Query: 63  LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      VR       P  +I+ PTRELA Q+ +   ++GK   +    +IGG+  E Q 
Sbjct: 355 ITSLPKIVREADIDQGPYAIIMAPTRELAQQIEEEAARFGKPVGIRTVAVIGGLNREEQG 414

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L +G +++I TPGR+LD  +   L++N    +V+DEADRM+DMGF P +Q+I   +P 
Sbjct: 415 FLLRQGCEIVIATPGRLLDVLDNSYLVLNQCTYVVLDEADRMIDMGFEPDVQSILEYLPV 474

Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           +                         RQT++F+ATM   +++++ ++L+ P  + + +  
Sbjct: 475 SNQKPDTDDAQDPNKIRLKLGDKNRYRQTVMFTATMPPPVERLARSYLRRPAVVYIGSAG 534

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
              E++E        +  K+  L+  L   +  +   IIF NQKK    L  SLEK G+ 
Sbjct: 535 KPTESVEQIVHMMKNENDKRKKLVTLLKTLESPI---IIFVNQKKGCDVLAKSLEKIGYR 591

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
              +HG   Q  R   L+  K G+  ++VA+D+A RG+DI DV +V N+D+    E+Y H
Sbjct: 592 SATLHGGKSQDQRELALNGLKSGSKDILVATDVAGRGIDIRDVQYVINYDMAKSIESYTH 651

Query: 332 RIGRTGRAGRHGKAFTLVAKED 353
           RIGRTGRAG+ G A T +  +D
Sbjct: 652 RIGRTGRAGKTGTAITFLTNDD 673


>gi|328769192|gb|EGF79236.1| hypothetical protein BATDEDRAFT_35392 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 647

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 152/395 (38%), Positives = 215/395 (54%), Gaps = 26/395 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  + P     V  AGY   TP+Q  ++ +V    D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 178 FEDSTMDPLAKSNVKLAGYSNATPVQRYSVAIVTAGRDLMACAQTGSGKTAAFLLPILSQ 237

Query: 63  LEKGRARVR----------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                A V           +P +LIL PTRELA Q+ +  +K+     +   +  GG P 
Sbjct: 238 NFSDGATVSDTPTDRRSKILPISLILAPTRELAIQIYEESKKFAYRSWVRPCVAYGGTPI 297

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT- 171
             Q + LERG  +L+ TPGR++D   RG++ + +I  LV+DEADRMLDMGF P I+ I  
Sbjct: 298 SDQLRDLERGCQLLVATPGRLVDLMERGRVSLASIRYLVLDEADRMLDMGFEPQIRQIVQ 357

Query: 172 -SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            + +P  RQTL+FSAT    +Q ++ +FL +   I V    ST+E I    +       K
Sbjct: 358 QADMPTDRQTLMFSATFPRNIQMLARDFLHDYVFIAVGRVGSTSENITQN-IEMVEDVDK 416

Query: 231 KCALLQQLL-------QSQDTMKN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
           +  LL  L        +S D   N  ++F   K+    LC+ L  Q F   AIHG+  QR
Sbjct: 417 RSVLLDILATDAGIAQESPDPAANLTLVFVETKRGADMLCNFLIDQRFPATAIHGDRTQR 476

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R   L +F+ G   ++VA+ +AARGLDIP+V HV NFD+P+  ++Y+HRIGRTGRAG  
Sbjct: 477 EREFALQSFRSGRTPVLVATAVAARGLDIPNVTHVVNFDLPSDIDDYVHRIGRTGRAGNI 536

Query: 343 GKAFTLVAKEDIKHI--DAIEKLIEKKVD---WLN 372
           GKA      E  + I  + +E L E   +   WLN
Sbjct: 537 GKATAFFNMEQNRGIVKELVEILQEANQEIPGWLN 571


>gi|323497774|ref|ZP_08102788.1| ATP-dependent RNA helicase SrmB [Vibrio sinaloensis DSM 21326]
 gi|323317121|gb|EGA70118.1| ATP-dependent RNA helicase SrmB [Vibrio sinaloensis DSM 21326]
          Length = 398

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 131/369 (35%), Positives = 209/369 (56%), Gaps = 5/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA+L L P ++ A+ + GY +PT IQ + IP  L   D+   A TGTGKTA+FVLP L 
Sbjct: 4   NFAELELDPNLLLAIEEMGYDRPTQIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQ 63

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    R   P R LIL PTRELA QVA+      K+  L +  + GG+ ++     L 
Sbjct: 64  YLQDFPRRKPGPARVLILTPTRELAMQVAEQARALAKHTKLNIFTITGGVQYQEHADILG 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  DV++ TPGR++++ N  +     IE L++DEADRMLDMGF P +  ++S   + +QT
Sbjct: 124 KTQDVVVATPGRLMEYINAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSSECRWRKQT 183

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+SAT+  + ++  + + L++P  I+        + I   +         K  LL+ ++
Sbjct: 184 HLYSATLEGKGVEGFTADLLKDPAEIDAEPSRRERKKIAQWY-HRADDMQHKFELLKHII 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      I+F   ++ +  L   LE        I G + Q  R   ++ F++GT+ ++
Sbjct: 243 TEQ--ADRTIVFLKTRERLGELRAQLEAAQVPCAWIQGEMPQDRRNNAIARFRDGTVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A +LV   D   +D 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRSADVYLHRIGRTARAGKKGNAVSLVEAHDQPMMDR 360

Query: 360 IEKLIEKKV 368
           + + +++ +
Sbjct: 361 VARYVKEDI 369


>gi|262164648|ref|ZP_06032386.1| ATP-dependent RNA helicase [Vibrio mimicus VM223]
 gi|262027028|gb|EEY45695.1| ATP-dependent RNA helicase [Vibrio mimicus VM223]
          Length = 448

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 141/389 (36%), Positives = 213/389 (54%), Gaps = 12/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLSIAGRDLLASSKTGSGKTLAFVLPML 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   + PR +IL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 61  HKSLKTKAFSAKDPRGVILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGR+ DH +   L ++ +E LV+DEADRMLD+GF   ++ I +     R 
Sbjct: 121 ARDPKFIVATPGRLADHLDHRSLFLDGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   ++  ++   L  PKRI +   S   + I +H ++  +  +  K ALL+
Sbjct: 181 QTLMFSATLDHADVNDIAMEMLNEPKRIAIGVGSEEHKDITQHFYLCDHLDH--KEALLE 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L   +  +  IIF   + +   L   L +      A+ GN++Q  R  I+S F+    
Sbjct: 239 RILADAE-YRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQAQRNTIMSQFERVVF 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++V +D+A+RGLDIP V HV NFD+P   E Y+HRIGRTGRAG  G A +LV  +D   
Sbjct: 298 KILVTTDVASRGLDIPTVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAMSLVGPKDWDS 357

Query: 357 IDAIEKLIEKKV-----DWLNGDLSSLNP 380
              +E  +++++     D L G    L P
Sbjct: 358 FKRVEAFLQQEIQFEVLDGLAGKFKGLKP 386


>gi|223997538|ref|XP_002288442.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220975550|gb|EED93878.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 421

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 140/376 (37%), Positives = 213/376 (56%), Gaps = 32/376 (8%)

Query: 21  YVKPTPIQIKTIPLVLQ-----RH-DVCGIAQTGTGKTASFVLPMLTILEKGRA----RV 70
           + +P+PIQ +  P++LQ     RH DV GIA+TG+GKT +F +P L+I+ K  +    R 
Sbjct: 1   FERPSPIQAQCWPVLLQTDSKGRHCDVVGIAETGSGKTLAFSMPALSIMAKDSSSTNNRG 60

Query: 71  RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130
           R PR L+L PTRELA Q     E++GK  NL+  ++ GG+P  AQ   L +G D ++CTP
Sbjct: 61  RSPRMLVLAPTRELAMQSQKVLEEFGKVVNLSSLVIYGGVPKPAQKDILRKGVDCIVCTP 120

Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQTLLFSATMT 188
           GR+ D  N G   ++NI  LV+DEADRMLDMGF   ++ I S       RQT +FSAT  
Sbjct: 121 GRLKDLVNEGSCDLSNISHLVLDEADRMLDMGFEEDVRYIISQCKEKEQRQTAMFSATWP 180

Query: 189 DELQKVSENFLQNPKRIEVNTPS------------------STAETIEHCFVATYAQYSK 230
             +Q+++  F+  P  I V   S                    ++T+E   +   A+  +
Sbjct: 181 AAIQQLALEFMMEPICIYVGFESIVGSNGENSIDDSLSANKRVSQTVE--VIEDRAREER 238

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
              L+++    +      ++F   KK    +  +L + GFS  +IHG+  Q +R + L+ 
Sbjct: 239 LRELIKKYTGGKRKNDRILVFALYKKEAARIEGTLNRWGFSCASIHGDKTQDARNRALAE 298

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK+G+  ++VA+D+AARGLDIPDV  V N+  P   E+Y+HRIGRTGRAG+ G ++T   
Sbjct: 299 FKDGSCPILVATDVAARGLDIPDVEVVLNYTFPLTIEDYVHRIGRTGRAGKSGISYTFFQ 358

Query: 351 KEDIKHIDAIEKLIEK 366
             D  H   +++++ +
Sbjct: 359 PGDKSHAGELQQVMRQ 374


>gi|301757526|ref|XP_002914626.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
           DDX17-like [Ailuropoda melanoleuca]
          Length = 775

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 214/381 (56%), Gaps = 20/381 (5%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 223 PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 282

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 283 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 338

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 339 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 398

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQ 237
           +SAT   E+++++E+FL++  +I V     +A     + ++ C  +   +  K   L+++
Sbjct: 399 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESE--KDHKLIQLMEE 456

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   
Sbjct: 457 IMAEKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAP 514

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K  
Sbjct: 515 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 574

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K++E+    +N  L  L
Sbjct: 575 RELIKVLEEANQAINPKLMQL 595


>gi|318062100|ref|ZP_07980821.1| putative ATP-dependent RNA helicase [Streptomyces sp. SA3_actG]
          Length = 527

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 128/340 (37%), Positives = 203/340 (59%), Gaps = 22/340 (6%)

Query: 41  VCGIAQTGTGKTASFVLPML---TI---LEKGRAR----VRMPRTLILEPTRELAAQVAD 90
           + G A+TGTGKT  F LP+L   T+   +E GRA        P+ L++ PTREL  QV +
Sbjct: 1   MIGQAKTGTGKTLGFGLPLLERVTVSADVEAGRATPDKLSEAPQALVVVPTRELCTQVTN 60

Query: 91  NFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEIL 150
           + +  GK  ++ V  + GG  +E Q + L++G DV++ TPGR+LD   + KL ++ +  L
Sbjct: 61  DLQTAGKVRDVRVLAIYGGRAYEPQVEALKKGVDVVVGTPGRLLDLAGQRKLDLSKVRAL 120

Query: 151 VIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           V+DEAD MLD+GF+P ++ I +++P  RQT+LFSATM   +  ++  ++  P  I   +P
Sbjct: 121 VLDEADEMLDLGFLPDVEKIVAMLPVKRQTMLFSATMPGAVVALARRYMSQPTHINATSP 180

Query: 211 ----SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI--IFCNQKKNVVNLCHS 264
               ++ A T +H F    A    K  ++ ++LQ++     G+  IFC  K+   ++   
Sbjct: 181 DDENATVANTEQHVF---RAHSMDKPEMVARILQAE---GRGLVMIFCRTKRTAADISEQ 234

Query: 265 LEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPN 324
           L+++GF+  A+HG++ Q +R + L  F+ G + ++V +D+AARG+D+  V HV N+  P 
Sbjct: 235 LQRRGFAAGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQTPE 294

Query: 325 RAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
             + Y+HRIGRTGRAGR G A TLV  +DI     I K +
Sbjct: 295 DEKTYLHRIGRTGRAGRSGTAVTLVDWDDIPRWQLINKAL 334


>gi|297157473|gb|ADI07185.1| ATP-dependent RNA helicase [Streptomyces bingchenggensis BCW-1]
          Length = 587

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 140/389 (35%), Positives = 219/389 (56%), Gaps = 34/389 (8%)

Query: 34  LVLQRHDVCGIAQTGTGKTASFVLPML---TI---LEKGRARVRM----PRTLILEPTRE 83
           + L   DV G A+TGTGKT  F LP+L   T+   +E GRA+  +    P+ L++ PTRE
Sbjct: 1   MALSGSDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRAKPELLTDAPQALVVVPTRE 60

Query: 84  LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           L  QV ++    GK   + V  + GG  +E Q + L++G DV++ TPGR+LD   + KL 
Sbjct: 61  LCQQVTNDLLTAGKVRAVRVLSIYGGRAYEPQVEALKKGVDVVVGTPGRLLDLAGQKKLR 120

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           +++++ LV+DEAD MLD+GF+P ++ I  ++P  RQT+LFSATM  ++  ++  ++  P 
Sbjct: 121 LSSVKSLVLDEADEMLDLGFLPDVEKIIQMLPAKRQTMLFSATMPGQVISLARRYMSQPT 180

Query: 204 RIEVNTPSSTAETI----EHCFVATYAQYSKKCALLQQLLQSQDTMKNGI--IFCNQKKN 257
            I    P     T+    +H F    A    K  ++ ++LQ++     G+  IFC  K+ 
Sbjct: 181 HIRATAPDDEGATVANITQHVF---RAHSLDKPEVVARVLQAE---GRGLVMIFCRTKRT 234

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
             ++   L  +GF+  A+HG++ Q +R + L  F+ G + ++VA+D+AARG+D+  V HV
Sbjct: 235 AADIADQLAHRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVATDVAARGIDVEGVTHV 294

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
            N+  P   + Y+HRIGRTGRAG  G A TLV  +DI       +LI K +D        
Sbjct: 295 INYQSPEDEKTYLHRIGRTGRAGASGTAITLVDWDDIPRW----QLINKALDL------P 344

Query: 378 LNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
            + P E    + H +   N  IP+ +TG 
Sbjct: 345 FSEPEETYSTSDHLYELLN--IPEGTTGV 371


>gi|221126753|ref|XP_002164824.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
 gi|260222162|emb|CBA31453.1| ATP-independent RNA helicase dbpA [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 460

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 145/395 (36%), Positives = 220/395 (55%), Gaps = 18/395 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   G+   TPIQ  ++P+ L   D+   A+TG+GKTA+F LP+L  
Sbjct: 4   FSTLPLAPATLANLQQLGFDAMTPIQAASLPVALAGKDLIAQAKTGSGKTAAFALPLLAK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L     R    + ++L PTRELA QV     +  +   N+ V  L GG+    Q   LE 
Sbjct: 64  LNP---RWFAVQAMVLCPTRELADQVTVEIRRLARAQDNIKVVTLCGGVATRGQRASLEN 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+D   R  L +  +  LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 121 GAHIVVGTPGRIMDLLEREYLTLEGLNTLVLDEADRMLDMGFFDDIVTVARQCPKERQTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           LFSAT  + ++K+++ F+Q+P++I+V  P +   TIE  F  V   +++S  C++L    
Sbjct: 181 LFSATYPEGIEKLAKQFMQDPQQIKVEAPVAD-NTIEQRFFEVDRESRFSAVCSILNHFR 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + I FCN K+    L   L   GF   A+HG++DQR R ++L+ F   +  ++
Sbjct: 240 PV-----STIAFCNTKQQCNELVDKLVTDGFVAQALHGDLDQRERDQVLAQFANRSCSVL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLD+ ++  V N D+    E ++HRIGRTGRAG  G A +L +  ++  +  
Sbjct: 295 VATDVASRGLDVKELDIVINVDITPDPEVHVHRIGRTGRAGEKGLAVSLASMREMGAVGK 354

Query: 360 IEKL-----IEKKVDWLNGDLSS-LNPPLEKIDIA 388
           IE+      +  K+D L    S  L PP+  + IA
Sbjct: 355 IEQYQNTPSVWHKLDELTPTGSGRLLPPMVTVQIA 389


>gi|119500728|ref|XP_001267121.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
 gi|143359899|sp|A1CX72|PRP28_NEOFI RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|119415286|gb|EAW25224.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
          Length = 796

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 139/431 (32%), Positives = 227/431 (52%), Gaps = 34/431 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + GL  +++  V   GY +PTPIQ   IP+ LQ  D+ G+A TG+GKTASF+LP+L  
Sbjct: 366 WEESGLPKRLLELVDQVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVY 425

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +       E    +   P  ++L PTRELA Q+     K+ +     V  ++GG  FE Q
Sbjct: 426 ISELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQ 485

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +P
Sbjct: 486 AYSLRNGAEIIIATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALP 545

Query: 176 FT--------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
            T                    RQT++++ATM   +++++  +L+ P  + + +     +
Sbjct: 546 VTNEKPDTEEAENSAAMRSHRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGSAGEAVD 605

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
           T+E   V   A   K+   L  +L S +     I+F N K+N   +   +++ GFS   +
Sbjct: 606 TVEQR-VEMIAGEDKRKKRLADILSSGEFRPPIIVFVNIKRNCDAIAREIKQMGFSSVTL 664

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++ N  E+Y HRIGR
Sbjct: 665 HGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIGR 724

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           TGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ    R 
Sbjct: 725 TGRAGKSGVAITFLGNEDADVMYDLKQML------MKSPISRVPEELRKHEAAQSKPNRG 778

Query: 396 NNPIPQKSTGF 406
                  S+GF
Sbjct: 779 FAKKSDDSSGF 789


>gi|47678395|emb|CAG30318.1| DDX17 [Homo sapiens]
 gi|109451124|emb|CAK54423.1| DDX17 [synthetic construct]
 gi|109451702|emb|CAK54722.1| DDX17 [synthetic construct]
 gi|119580647|gb|EAW60243.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_c [Homo
           sapiens]
 gi|169145045|emb|CAQ08924.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
 gi|208967743|dbj|BAG72517.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [synthetic construct]
          Length = 652

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 214/381 (56%), Gaps = 20/381 (5%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 100 PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 159

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 160 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQ 237
           +SAT   E+++++E+FL++  +I V     +A     + ++ C  +   +  K   L+++
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMES--EKDHKLIQLMEE 333

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   
Sbjct: 334 IMAEKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAP 391

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K  
Sbjct: 392 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 451

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K++E+    +N  L  L
Sbjct: 452 RELIKVLEEANQAINPKLMQL 472


>gi|297261056|ref|XP_001092491.2| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Macaca
           mulatta]
 gi|297708870|ref|XP_002831174.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Pongo
           abelii]
 gi|332859781|ref|XP_525595.3| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Pan
           troglodytes]
 gi|3122595|sp|Q92841|DDX17_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX17; AltName:
           Full=DEAD box protein 17; AltName: Full=DEAD box protein
           p72; AltName: Full=RNA-dependent helicase p72
 gi|1592565|gb|AAC50787.1| DEAD-box protein p72 [Homo sapiens]
 gi|2832596|emb|CAB09792.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
 gi|119580650|gb|EAW60246.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_f [Homo
           sapiens]
          Length = 650

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 214/381 (56%), Gaps = 20/381 (5%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 100 PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 159

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 160 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQ 237
           +SAT   E+++++E+FL++  +I V     +A     + ++ C  +   +  K   L+++
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMES--EKDHKLIQLMEE 333

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   
Sbjct: 334 IMAEKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAP 391

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K  
Sbjct: 392 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 451

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K++E+    +N  L  L
Sbjct: 452 RELIKVLEEANQAINPKLMQL 472


>gi|304395420|ref|ZP_07377303.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304356714|gb|EFM21078.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 460

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 134/355 (37%), Positives = 209/355 (58%), Gaps = 8/355 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY   TP+Q  T+P +LQ  DV   A+TG+GKTA+F + +L  ++  R + +    LIL 
Sbjct: 22  GYTSMTPVQAATLPAILQGRDVRAQAKTGSGKTAAFGIGLLHHIDSTRFQTQ---ALILC 78

Query: 80  PTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QV +   +  +   N+ V  L GG P  AQ   L     +++ TPGRILDH N
Sbjct: 79  PTRELADQVGNVLRQLARFTRNIKVLTLCGGQPMSAQRDSLVHPPHIVVGTPGRILDHIN 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           R  L ++ +  LV+DEADRML+MGF+  ++ I    P +RQTLLFSAT  D +  +S  F
Sbjct: 139 RENLKLDQLNTLVLDEADRMLEMGFLNDMETIIEATPASRQTLLFSATWPDGITAISTRF 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            ++   + V    S   +I+  F    A +++K  LL  LL  +    + ++FCN K+  
Sbjct: 199 QRDALSV-VTEEVSELPSIDQQFF--EASHNEKLGLLIALLSDRQP-SSCVVFCNTKREC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            ++  +L  +  S   +HG+++QR R ++L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 DDVAAALNARDISALPLHGDLEQRDRERVLIRFANGSGRVLVATDVAARGLDIKSLAMVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
           N+ +    E ++HRIGRT RAG HG A +LVA +++    A+E  +++K+ W++ 
Sbjct: 315 NYQLAWDPEIHLHRIGRTARAGEHGVAVSLVAADEMARAHALEDFLQQKLPWVSA 369


>gi|301169611|emb|CBW29212.1| ATP-dependent RNA helicase [Haemophilus influenzae 10810]
          Length = 415

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 140/368 (38%), Positives = 213/368 (57%), Gaps = 10/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   +      R PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 71  LLTHQDPNLEYRHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQAI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P    
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           R T+LFSAT++ ++++++   + +P+ IE+     T   I E  F   Y     K ALL 
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELF---YPSNQDKMALLL 247

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ +   +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F  G +
Sbjct: 248 TLMEDE-WPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTNGYL 306

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   +
Sbjct: 307 DILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMN 366

Query: 357 IDAIEKLI 364
           + AIE+ I
Sbjct: 367 LPAIEEYI 374


>gi|32880087|gb|AAP88874.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 17, 72kDa [synthetic
           construct]
 gi|61372130|gb|AAX43789.1| DEAD box polypeptide 17 [synthetic construct]
 gi|61372139|gb|AAX43790.1| DEAD box polypeptide 17 [synthetic construct]
          Length = 651

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 214/381 (56%), Gaps = 20/381 (5%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 100 PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 159

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 160 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQ 237
           +SAT   E+++++E+FL++  +I V     +A     + ++ C  +   +  K   L+++
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMES--EKDHKLIQLMEE 333

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   
Sbjct: 334 IMAEKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAP 391

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K  
Sbjct: 392 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 451

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K++E+    +N  L  L
Sbjct: 452 RELIKVLEEANQAINPKLMQL 472


>gi|198282005|ref|NP_001095463.1| probable ATP-dependent RNA helicase DDX17 [Bos taurus]
 gi|154757449|gb|AAI51649.1| DDX17 protein [Bos taurus]
 gi|296487004|gb|DAA29117.1| DEAD box polypeptide 17 [Bos taurus]
          Length = 650

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 214/381 (56%), Gaps = 20/381 (5%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 100 PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 159

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 160 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQ 237
           +SAT   E+++++E+FL++  +I V     +A     + ++ C  +   +  K   L+++
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMES--EKDHKLIQLMEE 333

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   
Sbjct: 334 IMAEKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAP 391

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K  
Sbjct: 392 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 451

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K++E+    +N  L  L
Sbjct: 452 RELIKVLEEANQAINPKLMQL 472


>gi|148613856|ref|NP_001091974.1| probable ATP-dependent RNA helicase DDX17 isoform 3 [Homo sapiens]
          Length = 731

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 214/381 (56%), Gaps = 20/381 (5%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 179 PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 238

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 239 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 294

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 295 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 354

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQ 237
           +SAT   E+++++E+FL++  +I V     +A     + ++ C  +   +  K   L+++
Sbjct: 355 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMES--EKDHKLIQLMEE 412

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   
Sbjct: 413 IMAEKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAP 470

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K  
Sbjct: 471 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 530

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K++E+    +N  L  L
Sbjct: 531 RELIKVLEEANQAINPKLMQL 551


>gi|38201710|ref|NP_006377.2| probable ATP-dependent RNA helicase DDX17 isoform 1 [Homo sapiens]
 gi|110611789|gb|AAH00595.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
          Length = 729

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 214/381 (56%), Gaps = 20/381 (5%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 179 PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 238

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 239 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 294

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 295 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 354

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQ 237
           +SAT   E+++++E+FL++  +I V     +A     + ++ C  +   +  K   L+++
Sbjct: 355 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMES--EKDHKLIQLMEE 412

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   
Sbjct: 413 IMAEKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAP 470

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K  
Sbjct: 471 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 530

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K++E+    +N  L  L
Sbjct: 531 RELIKVLEEANQAINPKLMQL 551


>gi|296425145|ref|XP_002842103.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638362|emb|CAZ86294.1| unnamed protein product [Tuber melanosporum]
          Length = 513

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 145/412 (35%), Positives = 232/412 (56%), Gaps = 18/412 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG+   +  A  + GY  PT IQ+++IP+ L+  D+ G+A+TG+GKTA+F +P+L  
Sbjct: 84  FKELGVMDSLCEACENLGYKNPTSIQVESIPVALEGKDLIGLAETGSGKTAAFAIPILQA 143

Query: 63  LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L         P  L   IL PTRELA Q+++ FE  G    +  A+++GG+    Q+  L
Sbjct: 144 LWDN------PTGLFACILAPTRELAFQISEQFEALGGGIGVRSAVIVGGMDMMTQSVAL 197

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +L+ TPGR+LDH    K   + N++ LV+DEADR+LDM F P +  I  ++P TR
Sbjct: 198 GKKPHILVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKVIPQTR 257

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +T LFSATMT +++K+    L +P RI V +  ST  T+   F+  +  +  K   L  L
Sbjct: 258 RTYLFSATMTSKVEKLQRASLSSPVRISVGSKYSTVSTLIQKFL--FIPFKHKDTYLVYL 315

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + ++   +  IIFC   +    L   L   GF+   ++G + Q +R+  L+ FK G+  +
Sbjct: 316 M-NEFAGQTTIIFCRTVQETSRLAILLRHLGFNAVPLNGQMSQSARLGALNKFKSGSRNI 374

Query: 299 MVASDLAARGLDI---PD--VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +VA+D+AARGLD+   PD  +  V N D+   ++ YIHR+GRT RAGR G++ +LV + +
Sbjct: 375 LVATDVAARGLDMHVSPDALLYCVLNHDLAQDSKTYIHRVGRTARAGRSGRSISLVTQYE 434

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           ++    IE  + KK+   +     +    E++  AQ   A++     +K  G
Sbjct: 435 VELFLRIEAALGKKIPEFDVQEEDVLIFSERVGEAQREAAKQLREEREKKGG 486


>gi|193666978|ref|XP_001948493.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Acyrthosiphon pisum]
          Length = 666

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 145/377 (38%), Positives = 209/377 (55%), Gaps = 16/377 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M+F ++ L   V   V   G+  PTPIQ  + P+ L   ++ GIAQTG+GKT +++LP +
Sbjct: 122 MNFNEVILPDYVFNEVKKQGFNNPTPIQAVSWPIALSGRNMVGIAQTGSGKTLAYMLPAI 181

Query: 60  LTILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L I  + R  R   P  L+L PTRELA Q+      +G +  +    + GG P   Q   
Sbjct: 182 LHINHQPRLLRYDGPIVLVLAPTRELAQQIQQVAVSFGTSTFVRNTCVFGGAPKGPQVDD 241

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG +++I TPGR++D   R    +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 242 LERGVEIVIATPGRLIDFLERNTTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 301

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPS-------STAETIEHCFVATYAQYSKK 231
           Q L++SAT   E++ ++E FL +   I+VN  S       + ++ ++ C    Y +  K 
Sbjct: 302 QVLMWSATWPPEVKNLAEEFLDD--YIQVNVGSLNLSANHNISQVVDVC--DDYEKEQKL 357

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
            ALL  +    D     IIF   K++V N+   + + G+    IHGN  Q  R   L+ F
Sbjct: 358 YALLTDIFSQPDNKT--IIFVETKRSVDNIVKLVNRNGWRSIGIHGNKSQNERDHTLNQF 415

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G   ++VA+D+AARGLD+ DV +V NFD PN +E+Y+HRIGRTGR+ R G AFT V  
Sbjct: 416 RSGQANILVATDVAARGLDVDDVKYVINFDYPNSSEDYVHRIGRTGRSSRTGTAFTFVTP 475

Query: 352 EDIKHI-DAIEKLIEKK 367
            + +   D I  L E K
Sbjct: 476 SNARQAKDLISVLQEAK 492


>gi|55963471|emb|CAI11913.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Danio rerio]
          Length = 468

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 157/420 (37%), Positives = 230/420 (54%), Gaps = 25/420 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  ++      G  +PT +Q K IP +L   D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    V     L+L PTRELA Q+A+ F   GK   L   +++GG+    Q  +L + 
Sbjct: 64  LSEDPYGVF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSKK 120

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178
             V++ TPGR+ DH      + +N I+ L++DEADR+L+ G   F   ++ I S VP  R
Sbjct: 121 PHVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILSAVPVKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+TD LQ++    +  P   E  +   T + ++  F+ T  +   K A L  L
Sbjct: 181 QTLLFSATLTDTLQQLQSIAMNRPFFWEHKSDVQTVKELDQRFILTPEKV--KDAYLVHL 238

Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q+ QD   +   IIF N  K+   L   L +  F   ++H  + QR R   L+ FK   
Sbjct: 239 IQTFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLAKFKSNV 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++A+D+AARGLDIP V  V N + P   + YIHR+GRT RAGR+G + TLV + DI 
Sbjct: 299 FKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIH 358

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI----AQHNHARKNNPIPQKSTGFDRRKK 411
            I+AIE+  + K+            P+E+ ++     Q N  R+   I  +ST FD +KK
Sbjct: 359 LINAIEEQNQTKLKEF---------PIEEKEVLKILTQVNVTRRQCEIKLESTDFDEKKK 409


>gi|218186850|gb|EEC69277.1| hypothetical protein OsI_38328 [Oryza sativa Indica Group]
          Length = 802

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 145/366 (39%), Positives = 205/366 (56%), Gaps = 11/366 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  ++ A    GY KPTPIQ   IPL L   D+CG A TG+GKTA+F LP+L  
Sbjct: 196 FLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLER 255

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     RV   R LIL PTRELAA V    EK  +  ++   L++GG+  + Q   L   
Sbjct: 256 LLFRPKRVPAIRVLILTPTRELAAPVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSM 315

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D+++ TPGRI+DH  N   + + ++ IL++DEADR+L++GF   IQ +  + P  RQT+
Sbjct: 316 PDIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCPRRRQTM 375

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVN----TPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           LFSATMT+E+ ++    L  P R+E +     P++  E +     A  A  +++  LL  
Sbjct: 376 LFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREA--NQEAVLLAL 433

Query: 238 LLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L+   T K+  IIF   K +   L       G     +HGN+ Q  R++ L  FK+  +
Sbjct: 434 CLK---TFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQEV 490

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             ++A+D+AARG+DI  V  V NF  P  A  Y+HR+GRT RAGR G A T V  +D   
Sbjct: 491 DFLIATDVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSL 550

Query: 357 IDAIEK 362
           + AI K
Sbjct: 551 LKAIAK 556


>gi|296191894|ref|XP_002743821.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like
           [Callithrix jacchus]
          Length = 650

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 214/381 (56%), Gaps = 20/381 (5%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 100 PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 159

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 160 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQ 237
           +SAT   E+++++E+FL++  +I V     +A     + ++ C  +   +  K   L+++
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMES--EKDHKLIQLMEE 333

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   
Sbjct: 334 IMAEKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAP 391

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K  
Sbjct: 392 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 451

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K++E+    +N  L  L
Sbjct: 452 RELIKVLEEANQAINPKLMQL 472


>gi|17507121|ref|NP_491703.1| hypothetical protein F33D11.10 [Caenorhabditis elegans]
 gi|2773184|gb|AAB96704.1| Hypothetical protein F33D11.10 [Caenorhabditis elegans]
          Length = 399

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 210/367 (57%), Gaps = 5/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + +P +L+  DV   AQ+GTGKTA+F + +L  
Sbjct: 28  FDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSISVLQS 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 88  LD---TQVRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYG 144

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   + +I   +P   Q +L
Sbjct: 145 QHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVL 204

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L+   L   
Sbjct: 205 LSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLID--LYDT 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   ++FCN ++ V  L   +++  F+V ++HG+++Q+ R +++  F+ GT ++++++
Sbjct: 263 LTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLIST 322

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ ARGLD+P V  V N+D+PN  E YIHRIGR+GR GR G A   V ++D++ +  IE+
Sbjct: 323 DVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDIEQ 382

Query: 363 LIEKKVD 369
               ++D
Sbjct: 383 YYSTQID 389


>gi|329938804|ref|ZP_08288200.1| ATP-dependent RNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329302295|gb|EGG46187.1| ATP-dependent RNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 673

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 131/348 (37%), Positives = 189/348 (54%), Gaps = 5/348 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   +V  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L
Sbjct: 32  LTFADLGLPEGIVRKLAQNGVTAPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPAL 91

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   R     PR +I+ PTRELA QVAD  + YG    L + ++ GG     Q   LE
Sbjct: 92  ATLAGARTEKHKPRAVIMTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALE 151

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVL+ TPGR+ D  NRG   + N++I V+DEAD+M D+GF+P +  +   +P   Q 
Sbjct: 152 RGVDVLVATPGRLRDLINRGACSLENVQIAVLDEADQMSDLGFLPEVTELLDQIPAGGQR 211

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM +E++ + + +L NP   EV+       T+ H  +       K  A +   + 
Sbjct: 212 MLFSATMENEIKTLVDRYLNNPVHHEVDAAQGAVTTMSHHILIV---KPKDKAPVTAAIA 268

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+      IIF   +     +   L   G    A+HG + Q +R + L++FK+G + ++V
Sbjct: 269 SRKGRT--IIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLV 326

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           A+D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L
Sbjct: 327 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSL 374


>gi|262173166|ref|ZP_06040843.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
 gi|261890524|gb|EEY36511.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
          Length = 448

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 141/389 (36%), Positives = 213/389 (54%), Gaps = 12/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLSIAGRDLLASSKTGSGKTLAFVLPML 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   + PR +IL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 61  HKSLKTKAFSAKDPRGVILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGR+ DH +   L ++ +E LV+DEADRMLD+GF   ++ I +     R 
Sbjct: 121 ARDPKFIVATPGRLADHLDHRSLFLDGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   ++  ++   L  PKRI +   S   + I +H ++  +  +  K ALL+
Sbjct: 181 QTLMFSATLDHADVNDIAMEMLNEPKRIAIGVGSEEHKDITQHFYLCDHLDH--KEALLE 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L   +  +  IIF   + +   L   L +      A+ GN++Q  R  I+S F+    
Sbjct: 239 RILADAE-YRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQAQRNTIMSQFERVVF 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++V +D+A+RGLDIP V HV NFD+P   E Y+HRIGRTGRAG  G A +LV  +D   
Sbjct: 298 KILVTTDVASRGLDIPTVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAMSLVGPKDWDS 357

Query: 357 IDAIEKLIEKKV-----DWLNGDLSSLNP 380
              +E  +++++     D L G    L P
Sbjct: 358 FKRVEAFLQQEIQFEVLDGLAGKFKGLKP 386


>gi|312210932|emb|CBX91018.1| hypothetical protein [Leptosphaeria maculans]
          Length = 516

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 141/376 (37%), Positives = 216/376 (57%), Gaps = 21/376 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FADLG+  ++  A  +  +  PTPIQ + IPL L+  DV G+A+TG+GKTA+FVLP+L  
Sbjct: 89  FADLGVREELCDACENLKFTTPTPIQTQAIPLALEGRDVIGLAETGSGKTAAFVLPILQA 148

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+K +A       LIL PTRELA Q+A   +  G   N+  A L+GG+    Q   L +
Sbjct: 149 LLDKPQALF----GLILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSK 204

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQ 179
              +++ TPGR+LDH    K   + +++ +V+DEADR+LD+ F P +  I  ++P   R 
Sbjct: 205 RPHIVVATPGRLLDHLENTKGFSLKHLKYMVLDEADRLLDLDFGPVLDKILRVLPRDGRH 264

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ------YSKKCA 233
           T LFSATM+ +++ +    LQNP R+ +++ S       H  V+T  Q      +  K  
Sbjct: 265 TYLFSATMSSKVESLQRAALQNPVRVSISSSS-------HQVVSTLLQRYLFIPHKHKDL 317

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L  LL + +     IIF         +   L   GF    +HG + Q +R+  L+ FK 
Sbjct: 318 YLIHLL-TDNIGHPTIIFTRTVNETERIAILLRALGFGAIPLHGQLSQSARLGALNKFKT 376

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            +  ++VA+D+A+RGLDIP V  V N D+P+ ++ Y+HR+GRT RAG+ GKAF+ V + D
Sbjct: 377 KSRDILVATDVASRGLDIPAVDLVVNLDLPSDSQTYVHRVGRTARAGKSGKAFSFVTQYD 436

Query: 354 IKHIDAIEKLIEKKVD 369
           ++    IE  + KK++
Sbjct: 437 VEIWLRIEHALGKKIE 452


>gi|157368407|ref|YP_001476396.1| ATP-dependent RNA helicase RhlB [Serratia proteamaculans 568]
 gi|189040037|sp|A8G828|RHLB_SERP5 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|157320171|gb|ABV39268.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
          Length = 428

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 139/366 (37%), Positives = 212/366 (57%), Gaps = 11/366 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P V+ A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPLVLEALEKKGFQHCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLTSTFHY 70

Query: 63  L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L     K   ++  PR LI+ PTRELA Q+  + E   ++  L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAKQDRKINQPRALIMAPTRELAVQIHSDAEALSQSTGLKMGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILVGTTGRLIDYAKQNYIDLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAVD 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G 
Sbjct: 248 QTLIE-EEWPDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGN 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYAL 366

Query: 356 HIDAIE 361
           ++ AIE
Sbjct: 367 NLPAIE 372


>gi|49903707|gb|AAH75762.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Danio rerio]
          Length = 468

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 158/420 (37%), Positives = 229/420 (54%), Gaps = 25/420 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  ++      G  +PT +Q K IP +L   D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    V     L+L PTRELA Q+A+ F   GK   L   +++GG+    Q  +L + 
Sbjct: 64  LSEDPYGVF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSKK 120

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178
             V++ TPGR+ DH      + +N I+ L++DEADR+L+ G   F   ++ I S VP  R
Sbjct: 121 PHVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILSAVPAKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+TD LQ++    +  P   E  +   T E ++  F+ T  +   K A L  L
Sbjct: 181 QTLLFSATLTDTLQQLQSIAMNRPFFWEHKSDVQTVEELDQRFILTPEKV--KDAYLVHL 238

Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q+ QD   +   IIF N  K+   L   L +  F   ++H  + QR R   L  FK   
Sbjct: 239 IQTFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLVKFKSNV 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++A+D+AARGLDIP V  V N + P   + YIHR+GRT RAGR+G + TLV + DI 
Sbjct: 299 FKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIH 358

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI----AQHNHARKNNPIPQKSTGFDRRKK 411
            I+AIE+  + K+            P+E+ ++     Q N  R+   I  +ST FD +KK
Sbjct: 359 LINAIEEQNQTKLKEF---------PIEEKEVLKILTQVNVTRRQCEIKLESTDFDEKKK 409


>gi|228469533|ref|ZP_04054526.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           uenonis 60-3]
 gi|228308883|gb|EEK17558.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           uenonis 60-3]
          Length = 436

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 137/380 (36%), Positives = 223/380 (58%), Gaps = 22/380 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF +L L  +V+  +    +V+ +PIQ +TIP +L+  DV G AQTG+GKTA+++LP L
Sbjct: 1   MDFYELDLEDEVLDGLDAMNFVETSPIQSETIPPLLEGRDVIGCAQTGSGKTAAYLLPFL 60

Query: 61  TILEKGRARVRMPR----TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFE 113
             +    AR  +P+     +++ PTRELA Q+    E +G   +++   + GG   I +E
Sbjct: 61  NKV----ARQELPKEHLGAVVMAPTRELAKQIDQEVEGFGYYVSVSTLAIYGGTDGIAWE 116

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + +  GAD++I TPGR+L     G   +++++  V+DEADRMLDMGF   I  I   
Sbjct: 117 QQRRGMALGADIVIATPGRLLSMLRLGACDLSHVQYFVLDEADRMLDMGFYEDIMEIYKA 176

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT---PSSTAETIEHCFVATYAQYSK 230
           +P   Q ++FSATM  E+ K+SE+ L +P  +E+     P S  +T   C+ A      +
Sbjct: 177 LPEDCQHVMFSATMPKEILKLSESILVDPVLVELAVAKPPKSIMQTAYICYDA------Q 230

Query: 231 KCALLQQLLQSQDT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K  +++ L  + ++ +   IIF   K  V  L  +L + G  V  +H ++ Q  R ++L 
Sbjct: 231 KLPIIRSLFANPESEVSRTIIFAGTKATVHALAQTLTRDGLPVAEMHSDLSQERREEVLR 290

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTL 348
           +F+ G I+++VA+D+ ARG+DI D+  V N++VP+  E+Y+HRIGRT R A   G A TL
Sbjct: 291 DFRMGRIKVLVATDIVARGIDIDDIAVVINYEVPHDFEDYVHRIGRTARGADGKGLAITL 350

Query: 349 VAKEDIKHIDAIEKLIEKKV 368
           V+  D +    +E+ +E+++
Sbjct: 351 VSPSDQQDFARLEQFLEQEI 370


>gi|62088770|dbj|BAD92832.1| DEAD box polypeptide 17 isoform p82 variant [Homo sapiens]
          Length = 737

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 140/377 (37%), Positives = 209/377 (55%), Gaps = 12/377 (3%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 181 PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 240

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 241 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 296

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 297 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 356

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           +SAT   E+++++E+FL++  +I V     +A       V    +  K   L+Q + +  
Sbjct: 357 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 416

Query: 243 DTMKN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +N  IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   +++A
Sbjct: 417 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 476

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    + 
Sbjct: 477 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 536

Query: 362 KLIEKKVDWLNGDLSSL 378
           K++E+    +N  L  L
Sbjct: 537 KVLEEANQAINPKLMQL 553


>gi|315101547|gb|EFT73523.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
          Length = 560

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 145/398 (36%), Positives = 224/398 (56%), Gaps = 24/398 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   +  A+   G V P  IQ  +IP+ ++  D+ G A+TGTGKT +F + +L  
Sbjct: 51  FADLGVREDICQALEGVGIVSPFQIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 110

Query: 63  L----EKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +    ++G   +     P+ L++ PTRELA QV+ +           V  + GG+ +E+Q
Sbjct: 111 ITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQ 170

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G DV++ TPGR+LD   R  L ++++ I+V+DEAD MLD+GF+P ++N+    P
Sbjct: 171 IDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTP 230

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYAQYSKKC 232
            +RQT+LFSATM   +  ++ + L+ P  +     +T ++  +T +  +    A    K 
Sbjct: 231 ASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY---QAHPLDKI 287

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            ++ ++LQ+ D  K  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+
Sbjct: 288 EIIGRILQANDVEKV-IIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFR 346

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   
Sbjct: 347 HGEATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWA 406

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           D+       KLI K    LN +LS    P+E    + H
Sbjct: 407 DVTRW----KLINKA---LNLELSE---PVETYSTSPH 434


>gi|320168199|gb|EFW45098.1| DEAD box polypeptide 49 [Capsaspora owczarzaki ATCC 30864]
          Length = 611

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 154/419 (36%), Positives = 227/419 (54%), Gaps = 12/419 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   +V      G   PT IQ+ TI  VL   +V G A+TG+GKTA+F LP+L  
Sbjct: 180 FAALGLKQWLVKQCEAMGLKHPTDIQVNTIKHVLAGRNVIGCAKTGSGKTAAFALPILHR 239

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L         P  ++L PTRELA Q+A+ F   GK  NL  A+++GG+    Q+  L + 
Sbjct: 240 LSDDP---YGPFAVVLTPTRELAFQIAEQFRALGKGINLREAVVVGGVDMMQQSLVLAKR 296

Query: 123 ADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQT 180
             V+I TPGR+ DH N   +L +     LV+DEADR+L+ GF P +  I +      RQT
Sbjct: 297 PHVIIATPGRLADHLNSNSQLSLARARFLVLDEADRLLEEGFSPDLNRILAAASNPQRQT 356

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+T  +  +    + N    E  +  +T  T++  FV T A+  K C L   L Q
Sbjct: 357 LLFSATITKNIANLESMSMSNVVHYETKSSVATVTTLDQRFVITPAKV-KDCYLSYLLGQ 415

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D  K+ I+F +  +N   +   ++  GF   A+H  + Q  R+  L+ FK   + +++
Sbjct: 416 HED--KSIIVFTSSCRNCETITRMIKALGFRCVALHSEMSQSMRLGSLAKFKSSIVNILI 473

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V N DVP  + +Y+HR+GRT RAGR G A T V + DI+ I  I
Sbjct: 474 ATDVASRGLDIPTVKLVINNDVPRTSTDYVHRVGRTARAGRGGMAVTFVTQYDIELIQHI 533

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           E  I+ K+  L  D  +    L  +  A+     +   + +++ G +RR++N   Q  H
Sbjct: 534 ESKIKVKLSALTMDEDAALVNLNDVTTAKRTAIME---MAEENFG-ERRRRNLEKQDMH 588


>gi|302559847|ref|ZP_07312189.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
 gi|302477465|gb|EFL40558.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
          Length = 538

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 133/346 (38%), Positives = 190/346 (54%), Gaps = 5/346 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L  
Sbjct: 101 FADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLAT 160

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  GR     PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LERG
Sbjct: 161 LAGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVVGLRMKVVCGGTSMGNQIYALERG 220

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+ D  NRG   + N++I V+DEAD+M D+GF+P +  +   VP   Q +L
Sbjct: 221 VDILVATPGRLRDIINRGACSLENVQIAVLDEADQMSDLGFMPEVTELLDQVPPGGQRML 280

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E++ + + +L++P   EV+       T+ H  +       K  A +   + S+
Sbjct: 281 FSATMENEIKTLVDRYLKDPVSHEVDAAQGAVTTMSHHILVV---KPKDKAPVTAAIASR 337

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L   G    A+HG + Q +R + L++FK+G + ++VA+
Sbjct: 338 KGRT--IIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLVAT 395

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L
Sbjct: 396 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSL 441


>gi|198452778|ref|XP_001358938.2| GA10214 [Drosophila pseudoobscura pseudoobscura]
 gi|198132073|gb|EAL28081.2| GA10214 [Drosophila pseudoobscura pseudoobscura]
          Length = 738

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 141/389 (36%), Positives = 212/389 (54%), Gaps = 12/389 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF ++ L   V   +   GY +PTPIQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 297 DFGEVYLPEYVTKEIRRQGYKEPTPIQAQGWPIAMSGANFVGIAKTGSGKTLGYILPAIV 356

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +  ++   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 357 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 416

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 417 QRGCEIVIATPGRLIDFLSSGGTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 476

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+++++E+FL N  +I + +   +A       V    ++SK+  L   L 
Sbjct: 477 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVEVCDEFSKEEKLKSLLS 536

Query: 240 QSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
              DT +N    IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G  
Sbjct: 537 DIYDTSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 596

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + K 
Sbjct: 597 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 656

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
             A+       VD L      +NP LE +
Sbjct: 657 AKAL-------VDVLREANQEINPALENL 678


>gi|195453112|ref|XP_002073643.1| GK14214 [Drosophila willistoni]
 gi|194169728|gb|EDW84629.1| GK14214 [Drosophila willistoni]
          Length = 745

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 141/389 (36%), Positives = 213/389 (54%), Gaps = 12/389 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF ++ L   V+  +   GY +PTPIQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 305 DFNEVYLPDYVMKEIRRQGYKEPTPIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIV 364

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +  ++   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 365 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 424

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 425 QRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 484

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+++++E+FL N  +I + +   +A       V    ++SK+  L   L 
Sbjct: 485 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVEVCDEFSKEDKLKSLLS 544

Query: 240 QSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
              DT +N    IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G  
Sbjct: 545 DIYDTSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 604

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + K 
Sbjct: 605 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 664

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
             A+       VD L      +NP LE +
Sbjct: 665 AKAL-------VDVLREANQEINPALENL 686


>gi|332231227|ref|XP_003264799.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Nomascus
           leucogenys]
          Length = 644

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 214/381 (56%), Gaps = 20/381 (5%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 92  PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 151

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 152 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 207

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 208 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 267

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQ 237
           +SAT   E+++++E+FL++  +I V     +A     + ++ C  +   +  K   L+++
Sbjct: 268 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESE--KDHKLIQLMEE 325

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   
Sbjct: 326 IMAEKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAP 383

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K  
Sbjct: 384 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 443

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K++E+    +N  L  L
Sbjct: 444 RELIKVLEEANQAINPKLMQL 464


>gi|327278500|ref|XP_003224000.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like [Anolis
           carolinensis]
          Length = 1030

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 147/448 (32%), Positives = 243/448 (54%), Gaps = 27/448 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 372 WVQCGISMKILNSLKKHGYEKPTPIQAQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRH 431

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   + V  + GG     Q 
Sbjct: 432 IMDQRPLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGVRVVCVYGGTGISEQI 487

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 488 AELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 547

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           V   RQT++FSAT    ++ ++   L  P  ++V   S     +E   +    + +K   
Sbjct: 548 VRPDRQTVMFSATFPRAMEALARRILNKPIEVQVGGRSVVCSDVEQNVIVIEEE-NKFLK 606

Query: 234 LLQQL--LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
           LL+ L   Q Q  +   IIF +++++   L   L +  +   ++HG IDQ  R  I+++F
Sbjct: 607 LLELLGHFQEQGAV---IIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDF 663

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G  +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + +
Sbjct: 664 KSGVCKLLVATSVAARGLDVKHLMLVINYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITE 723

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           +  ++   I K +E     L+G  + +   LEK+     +  +      +KS+GF  +  
Sbjct: 724 DQARYAGDIIKALE-----LSG--TPVPSELEKLWNDFKDQQKAEGKTIKKSSGFSGKGF 776

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQEND 439
            +   +  +   E +K+ K    +Q++D
Sbjct: 777 KFDETEEALA-NERKKLQKAALGLQDSD 803


>gi|309813271|ref|ZP_07706987.1| DEAD/DEAH box helicase [Dermacoccus sp. Ellin185]
 gi|308432767|gb|EFP56683.1| DEAD/DEAH box helicase [Dermacoccus sp. Ellin185]
          Length = 906

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 138/350 (39%), Positives = 194/350 (55%), Gaps = 6/350 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   +V  +   G  KP PIQ  TIP  +   DV G  +TG+GKT  F LPML
Sbjct: 395 MTFTELGLPEALVERMARDGITKPFPIQAATIPDAMAGKDVLGRGRTGSGKTLGFGLPML 454

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L E G+AR   PR ++L PTRELA QV+D  +       L   L+ GG+P+E Q   L
Sbjct: 455 ARLAEGGKARAHQPRAIVLVPTRELAMQVSDALQPLVHVVGLKHKLVAGGMPYEPQLSAL 514

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG DVLI TPGR+ D   RG   ++ +EI V+DEAD M +MGF+  I  I  LVP   Q
Sbjct: 515 ERGVDVLIATPGRLSDLIERGAADLSRVEIAVLDEADHMAEMGFLEAITEILDLVPEGGQ 574

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT+   +  V + +L +P     +  ++T  T+EH   A   +   K  +  ++ 
Sbjct: 575 RLLFSATLDRGIDSVVDKYLVDPVTHSTDDGTATVTTMEHH--ALLIEPRDKKVVTAEVA 632

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      ++F   K     +   L +QG    A+HG ++Q  R ++LS FK+G + ++
Sbjct: 633 NREGRT---VVFVRTKMGADRVAAELREQGVMAAALHGGLNQGQRNRVLSAFKDGRVPVL 689

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           VA+D+AARG+ + +VG V   D P   ++Y+HR GRT RAG  G   TL 
Sbjct: 690 VATDVAARGIHVDEVGVVLQVDPPADHKDYLHRAGRTARAGEKGTVITLA 739


>gi|145493178|ref|XP_001432585.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399698|emb|CAK65188.1| unnamed protein product [Paramecium tetraurelia]
          Length = 564

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 150/427 (35%), Positives = 232/427 (54%), Gaps = 7/427 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L L+  +V A  D GY  PT +Q K IP+++   DV   + TG+GKTA+F+LP++ 
Sbjct: 117 EFHQLKLNKALVKACHDQGYTHPTNVQAKIIPIIMNGKDVLASSCTGSGKTAAFLLPIMQ 176

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                +  ++  + LI+ PTRELA Q  + FEK  K  N T AL+IG +P + Q  +L +
Sbjct: 177 RFGNLK-NLQYSKALIILPTRELALQCFEMFEKLNKYANCTAALVIGAVPIQQQETELRK 235

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR +D   N   L + NIEILV DEADR+++MGF   I+ I       RQT
Sbjct: 236 YPDIIIATPGRTVDLLTNSSSLEIQNIEILVFDEADRLMEMGFEKEIRQILQATSKDRQT 295

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQLL 239
           +L SAT+   ++++S   L NP ++ V+     A  ++   +   + Q S + A L  LL
Sbjct: 296 VLISATLNATVKQLSLLALNNPIKVNVDFVGGLAYGLKQYLLRIRSNQDSDREATLITLL 355

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +++   K  IIF   K +   L   L     S C +HGN+ Q+ R++   +FKEG  Q +
Sbjct: 356 KTKFKEKT-IIFVKTKHDCHRLAIVLGFLDMSSCELHGNLSQQQRIQAYEDFKEGKFQFL 414

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+DLAARGLD+ DV  V N+++P     YIHR+GRT R G  G + T+  + ++     
Sbjct: 415 LATDLAARGLDLTDVKAVINYEIPYEVTRYIHRVGRTARIGAQGISVTICLENEVVK--- 471

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
            +K+I +    L   ++  N   +     Q    +    I ++    + RK    +QK  
Sbjct: 472 FKKMIRQSKQQLFKMIADTNKVRQMRRQIQQLEPQIRKVIKEEVAEMEVRKTEMMTQKGE 531

Query: 420 IPLKESE 426
           IP++ESE
Sbjct: 532 IPMEESE 538


>gi|198413641|ref|XP_002129468.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
           isoform 1 [Ciona intestinalis]
          Length = 449

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 214/370 (57%), Gaps = 13/370 (3%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F  LG+   V+C   D  G+ KP+ IQ + IP+ LQ +DV G+A+TG+GKT +F +P+L 
Sbjct: 22  FQSLGVV-DVLCETCDKLGWKKPSKIQEEAIPVALQGNDVIGLAETGSGKTGAFCIPVLQ 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+ + F+  G    +   +++GG+    Q   L +
Sbjct: 81  ALLENPQRLF---ALVLTPTRELAFQIEEQFKALGSAIGIKTCVVVGGVDMMGQQIILAK 137

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR++DH  + K   + +I+ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 138 KPHVVVATPGRLVDHLEKTKGFTLRSIKFLVLDEADRILNMDFESELDTILKVIPRERRT 197

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQL 238
            LFSATMT +++K+    L  P +  VN    T + +   + F+ +  +     A++ +L
Sbjct: 198 FLFSATMTGKVKKLQRAALTKPVKCAVNNKYHTVDKLFQYYLFLPSKDKDCYLAAVVNEL 257

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             + + M   IIFC    N       L   G S   +HG + Q  R+  L+ FK  T  +
Sbjct: 258 --AGNAM---IIFCGTCANTQRTALILRNLGISAVPLHGQMSQAKRLGALNKFKSATKSI 312

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RGLDIP V  V N DVP R+++YIHR+GRT RAGR GK+ T V + D++   
Sbjct: 313 LVATDVASRGLDIPHVDVVINMDVPARSKDYIHRVGRTARAGRFGKSVTFVTQYDVELYQ 372

Query: 359 AIEKLIEKKV 368
            IE+LI KK+
Sbjct: 373 RIEELIGKKL 382


>gi|238798893|ref|ZP_04642359.1| ATP-dependent RNA helicase rhlB [Yersinia mollaretii ATCC 43969]
 gi|238717247|gb|EEQ09097.1| ATP-dependent RNA helicase rhlB [Yersinia mollaretii ATCC 43969]
          Length = 429

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 139/366 (37%), Positives = 210/366 (57%), Gaps = 11/366 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P V  A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPLVTQALESKGFEYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY 70

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     E+GR +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 71  LLSNPAEEGR-QTNQPRALIMAPTRELAVQIHSDAESLSQTTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV 189

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R  +LFSAT++  +++++   + N + +EV     T   I+      Y    +K  LL
Sbjct: 190 DKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELF--YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL +F +G 
Sbjct: 248 QTLIE-EEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYAL 366

Query: 356 HIDAIE 361
           ++ AIE
Sbjct: 367 NLPAIE 372


>gi|66805957|ref|XP_636700.1| hypothetical protein DDB_G0288501 [Dictyostelium discoideum AX4]
 gi|74896924|sp|Q54IV3|DDX42_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx42; AltName:
           Full=DEAD box protein 42
 gi|60465098|gb|EAL63199.1| hypothetical protein DDB_G0288501 [Dictyostelium discoideum AX4]
          Length = 986

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 147/398 (36%), Positives = 214/398 (53%), Gaps = 26/398 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F   G    ++ A+       PTPIQ + IP+ L   D+  IA+TG+GKTA+F+ P ++ 
Sbjct: 307 FGHYGFDDILLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISH 366

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LEKG      P  L L PTRELA Q+     KY K + L   +L GG+  + Q 
Sbjct: 367 IMDQPYLEKGDG----PIALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQC 422

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K+L+ G ++++ TPGR++D        +N +  LV+DEAD+M D GF P + +I + V  
Sbjct: 423 KELKAGCEIIVATPGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRP 482

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT    +++ +   L +P +I +    S    I        +   K   L  
Sbjct: 483 DRQTLLFSATFKPNVEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDSDKWNWLTN 542

Query: 237 Q--LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           Q  LL SQ ++   +IF + K  V  L  +L K GF  C +HG+ +Q  R + +  FKEG
Sbjct: 543 QLALLLSQGSV---LIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEG 599

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I +++A+D+AARGLDIP + +V N+D     E++ HRIGRTGRAG  G A+TL+  +DI
Sbjct: 600 KINILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKDI 659

Query: 355 K-HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
              +D I+ L            S   PP E ID+A +N
Sbjct: 660 HFSVDLIKNL---------ESASQFVPP-ELIDVAMNN 687


>gi|164687249|ref|ZP_02211277.1| hypothetical protein CLOBAR_00890 [Clostridium bartlettii DSM
           16795]
 gi|164603673|gb|EDQ97138.1| hypothetical protein CLOBAR_00890 [Clostridium bartlettii DSM
           16795]
          Length = 371

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 220/368 (59%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F DL +S +++  +   G   PTPIQ ++I  +    D+   +QTGTGKT +F++P+ 
Sbjct: 1   MNFKDLKISDELIDTLKKNGIKTPTPIQEESILHIKNNKDILAQSQTGTGKTLAFLIPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      ++   TLIL PTRELA Q+ +  EK  K+ N+ V    GG   ++Q  KL+
Sbjct: 61  DSISPKNQNIQ---TLILAPTRELAIQIYNEAEKLNKDKNINVLAAYGGKDIKSQLNKLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++I TPGR+LDH +R  + ++ +  LV+DEAD+M+ MGF   I+ I       RQT
Sbjct: 118 RNIQLVIATPGRLLDHLDRKSIDLSKLNTLVLDEADQMILMGFKNEIEAIIKETNKKRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+  +++K++  ++++P  + + +   T ETI+   V T  ++ K+ AL + L +
Sbjct: 178 LCFSATLDSQVKKLAYRYMKDPVEVTIKSKEITLETIKQEVVETTDRH-KQEALCKVLDE 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               M   IIFC  K+ V  L  +L  +G++   +H +I Q  R +I+ +F++  +Q ++
Sbjct: 237 DNPFM--AIIFCRTKRRVDALDEALAVKGYNCEKLHSDIPQAKRERIIKSFRKADLQYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI  + H++N+D+P  +E+YIHRIGRTGR G  G     V  ++ K ++ I
Sbjct: 295 ATDVASRGLDITGITHIYNYDIPETSEDYIHRIGRTGRIGNDGYTCMFVDPKNTKTLEKI 354

Query: 361 EKLIEKKV 368
           E  I+ ++
Sbjct: 355 ESDIKYEI 362


>gi|318607668|emb|CBY29166.1| ATP-dependent RNA helicase RhlB [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 428

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 139/366 (37%), Positives = 212/366 (57%), Gaps = 11/366 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P V+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPLVIEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY 70

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     E+GR +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 71  LLSHPAEEGR-QTNQPRALIMAPTRELAVQIHSDAESLSQVTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV 189

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R  +LFSAT++  +++++   + N + +EV     T   I+      Y    +K  LL
Sbjct: 190 DKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELF--YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL +F +G 
Sbjct: 248 QTLIE-EEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYAL 366

Query: 356 HIDAIE 361
           ++ AIE
Sbjct: 367 NLPAIE 372


>gi|238765157|ref|ZP_04626090.1| ATP-dependent RNA helicase rhlB [Yersinia kristensenii ATCC 33638]
 gi|238696647|gb|EEP89431.1| ATP-dependent RNA helicase rhlB [Yersinia kristensenii ATCC 33638]
          Length = 428

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 139/366 (37%), Positives = 212/366 (57%), Gaps = 11/366 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P V+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPLVIEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY 70

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     E+GR +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 71  LLSHPAEEGR-QTNQPRALIMAPTRELAVQIHSDAESLSQITGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV 189

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R  +LFSAT++  +++++   + N + +EV     T   I+      Y    +K  LL
Sbjct: 190 DKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELF--YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL +F +G 
Sbjct: 248 QTLIE-EEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYAL 366

Query: 356 HIDAIE 361
           ++ AIE
Sbjct: 367 NLPAIE 372


>gi|255654878|ref|ZP_05400287.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-23m63]
 gi|296449624|ref|ZP_06891399.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP08]
 gi|296878056|ref|ZP_06902072.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP07]
 gi|296261522|gb|EFH08342.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP08]
 gi|296430956|gb|EFH16787.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP07]
          Length = 375

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 214/369 (57%), Gaps = 6/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  LG+S   +  +  +G   PTPIQ ++I L+ +  DV   AQTGTGKT +F+LP  
Sbjct: 7   MDFKSLGISENTINILKKSGITTPTPIQKESIKLIKEGKDVIAEAQTGTGKTLAFLLP-- 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I E     +   + LIL PTRELA Q+ +   K  ++ ++++    GG    +Q KKL+
Sbjct: 65  -IFENISLDINDIQVLILSPTRELAIQITEEAMKLKESKDVSILAAYGGKDIGSQIKKLK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH NR  + ++ ++  V+DEAD+ML MGF   ++ I       +QT
Sbjct: 124 GNIHMIIATPGRLLDHLNRKTIDLSKLKTFVLDEADQMLLMGFKNEVEAILKETSNKKQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+  +++K++  + +NP  + +     T   I+   V T  +  KK   L ++L 
Sbjct: 184 LCFSATINSQVKKLAYRYTKNPVVVSIQKEEITLNNIKQEVVETTDR--KKLDALCKVL- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIFC  K+ V NL  +L  +G++   +H +I Q  R +I+ +F+   IQ ++
Sbjct: 241 DEDNPFMAIIFCRTKRRVDNLEEALAIRGYNCQKLHSDIAQSKRERIMKSFRNLDIQYLI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI  V H++N+D+P   E+YIHRIGRTGRAG  G     +  ++ + +  I
Sbjct: 301 ATDVASRGLDISGVSHIYNYDLPETPEDYIHRIGRTGRAGEEGYTCAFIDPKNERMLSEI 360

Query: 361 EKLIEKKVD 369
           E  IE K++
Sbjct: 361 ETAIESKIN 369


>gi|226509858|ref|NP_001147574.1| ATP-dependent RNA helicase DRS1 [Zea mays]
 gi|195612276|gb|ACG27968.1| ATP-dependent RNA helicase DRS1 [Zea mays]
          Length = 770

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 145/364 (39%), Positives = 205/364 (56%), Gaps = 7/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  +V A    GY KPTPIQ   IPL L   D+CG A TG+GKTA+F LP+L  
Sbjct: 164 FLELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLER 223

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     RV   R LIL PTRELAAQV    EK  +  ++   L++GG+  + Q   L   
Sbjct: 224 LLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSM 283

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D+++ TPGRI+DH  N   + + ++ ++++DEADR+L++GF   IQ +  + P  RQT+
Sbjct: 284 PDIVVATPGRIIDHLRNSLSVGLEDLAVVILDEADRLLELGFSAEIQELIRMCPKRRQTM 343

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQLL 239
           LFSATMT+E+ ++ +  L  P R+E + PS    A   E       A+ S + A+L  L 
Sbjct: 344 LFSATMTEEIDELIKLSLNKPVRLEAD-PSLKRPATLTEEVVRIRRARESNQEAVLLALC 402

Query: 240 QSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               T K   IIF   K++   L       G     +HGN+ Q  R++ L  F++  +  
Sbjct: 403 LK--TFKRSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFRKQEVDF 460

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI  V  V NF  P   + Y+HR+GRT RAGR G A T V  +D   + 
Sbjct: 461 LIATDVAARGIDIVGVQTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRSLLK 520

Query: 359 AIEK 362
           AI K
Sbjct: 521 AIAK 524


>gi|311255076|ref|XP_003126098.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Sus
           scrofa]
          Length = 801

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 214/381 (56%), Gaps = 20/381 (5%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 249 PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 308

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 309 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 364

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 365 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 424

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQ 237
           +SAT   E+++++E+FL++  +I V     +A     + ++ C  +   +  K   L+++
Sbjct: 425 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMES--EKDHKLIQLMEE 482

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   
Sbjct: 483 IMAEKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAP 540

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K  
Sbjct: 541 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 600

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K++E+    +N  L  L
Sbjct: 601 RELIKVLEEANQAINPKLMQL 621


>gi|332159793|ref|YP_004296370.1| putative DEAD-box helicase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664023|gb|ADZ40667.1| putative DEAD-box helicase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 423

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 139/366 (37%), Positives = 212/366 (57%), Gaps = 11/366 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P V+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 6   FSDFALHPLVIEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY 65

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     E+GR +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 66  LLSHPAEEGR-QTNQPRALIMAPTRELAVQIHSDAESLSQVTGLKLGLAYGGDGYDKQLK 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 125 VLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV 184

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R  +LFSAT++  +++++   + N + +EV     T   I+      Y    +K  LL
Sbjct: 185 DKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELF--YPSNEEKMRLL 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL +F +G 
Sbjct: 243 QTLIE-EEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGD 301

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 302 LDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYAL 361

Query: 356 HIDAIE 361
           ++ AIE
Sbjct: 362 NLPAIE 367


>gi|91792775|ref|YP_562426.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91714777|gb|ABE54703.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 468

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 136/374 (36%), Positives = 211/374 (56%), Gaps = 7/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F+D  L  +++ ++   G   PTPIQ + +P+ L   D+   ++TG+GKT +F+LP M
Sbjct: 12  LQFSDFSLDKRLLDSLKHLGITTPTPIQEQALPIALTGKDLMASSKTGSGKTLAFLLPAM 71

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I+       R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 72  QRIISTKALSKRDPRVLILLPTRELAQQVYGQLRLLVANTQYKAVSILGGENFNDQAKAL 131

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGRI DH  +  L +N +E+L++DEADRMLD+GF P +  I +     R 
Sbjct: 132 SREPHFIVATPGRIADHLQQRHLHLNGLELLILDEADRMLDLGFAPQLAAINAAADHKRR 191

Query: 179 QTLLFSATMT-DELQKVSENFLQNPKRIEVNTP-SSTAETIEHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+  DE+ +++   L++P  I +    +  A+  +   +  +  +  K ALL+
Sbjct: 192 QTLMFSATLEHDEINEIAATLLKSPNHIAIGAAYTEHADITQRIILVDHLDH--KQALLE 249

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +L + +T K  IIF   + +   L   L  +GF+  A+ GN++Q +R +I+  F  G  
Sbjct: 250 HVL-TNETNKQIIIFTATRVDTERLASLLADKGFATAALSGNLNQGARNQIMDQFARGQK 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D   
Sbjct: 309 QILVTTDVASRGLDLINVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAVSLVGPKDWDS 368

Query: 357 IDAIEKLIEKKVDW 370
              ++  + K  ++
Sbjct: 369 FIKVQAFLRKTFEF 382


>gi|256018403|ref|ZP_05432268.1| ATP-dependent RNA helicase DbpA [Shigella sp. D9]
 gi|332279457|ref|ZP_08391870.1| ATP-dependent RNA helicase DbpA [Shigella sp. D9]
 gi|332101809|gb|EGJ05155.1| ATP-dependent RNA helicase DbpA [Shigella sp. D9]
          Length = 457

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 219/377 (58%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q+  +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQVAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAVISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W     +S   PLE
Sbjct: 363 KLNWQTPPANSSILPLE 379


>gi|255941704|ref|XP_002561621.1| Pc16g13220 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586244|emb|CAP93992.1| Pc16g13220 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 815

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 140/359 (38%), Positives = 205/359 (57%), Gaps = 7/359 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  ++  +   G+  PTPIQ K IP+ L   D+ G A TG+GKTA+F++P+L
Sbjct: 304 MTFQEFNLSRPILRGLAAVGFTDPTPIQRKAIPVALLGKDIVGSAVTGSGKTAAFIVPIL 363

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +V   R +IL PTRELA Q  +   K     ++T   L+GG     Q   L+
Sbjct: 364 ERLLFRPRKVPTSRVVILMPTRELAVQCYNVSVKLATFTDVTFCQLVGGFSLREQENVLK 423

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQ
Sbjct: 424 KRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQ 483

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQL 238
           T+LFSATMTD + K+    +  P R+ V++  +T  T+   FV     +  K+   L  L
Sbjct: 484 TMLFSATMTDSIDKLIRVGMNRPVRLMVDSKKNTVSTLVQEFVRLRPGREDKRLGYLLHL 543

Query: 239 LQSQDTMKNGIIFCNQKKNV--VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            + +   K  IIF  QKK    V +  SL   G     +HG++ Q  R+K + NF++G +
Sbjct: 544 CK-EIYSKRVIIFFRQKKEAHRVRIIFSL--LGLKAAELHGSLSQEQRIKSVENFRDGKV 600

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++A+D+A+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K
Sbjct: 601 AFLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRK 659


>gi|194226836|ref|XP_001916530.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Equus
           caballus]
          Length = 791

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 214/381 (56%), Gaps = 20/381 (5%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 241 PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 300

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 301 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 356

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 357 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 416

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQ 237
           +SAT   E+++++E+FL++  +I V     +A     + ++ C  +   +  K   L+++
Sbjct: 417 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESE--KDHKLIQLMEE 474

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   
Sbjct: 475 IMAEKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAP 532

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K  
Sbjct: 533 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 592

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K++E+    +N  L  L
Sbjct: 593 RELIKVLEEANQAINPKLMQL 613


>gi|319791034|ref|YP_004152674.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS]
 gi|315593497|gb|ADU34563.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
          Length = 421

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 141/365 (38%), Positives = 207/365 (56%), Gaps = 6/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P +V A  ++G+  PT IQ   IP +LQ  DV G AQTG+GKTA+F LP+L
Sbjct: 1   MPFDSLGLAPALVQAAAESGFAAPTAIQAAAIPPILQGRDVRGSAQTGSGKTAAFSLPLL 60

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNK 117
             L    A+  R  R L+L PTRELAAQV +      ++    L +A+  GG+    Q  
Sbjct: 61  QRLAAEPAQSPRRVRALVLVPTRELAAQVGETMRSLAQHLPERLKIAIAFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GAD+++ TPGR+LD      L +  + +LV+DEADR+ D+GF   +  I +L+P  
Sbjct: 121 SLRGGADIVVATPGRLLDLVEHNALKLGAVSMLVLDEADRLFDLGFAEELGRILALLPAQ 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT    +Q +++  L++P  I++     T   I    +   A  +++  LL+ 
Sbjct: 181 RQNLLFSATFPPAIQSLADGMLRDPAVIDMQGEPGTEPNIVQRVIEVDA--NRRTQLLRH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ ++  +  ++F   + +   +   L K G      HG+I Q +R  IL+ FKE    
Sbjct: 239 LLK-ENEWERVLVFVATQHSAQIVAEKLYKNGVYAVPFHGDIAQGTRTGILAQFKESRWD 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+DLAARG+DI  +  V N+D+P    +YIHRIGRTGRAG  G A + V+     H 
Sbjct: 298 VVIATDLAARGIDIAQLPVVINYDLPRSPTDYIHRIGRTGRAGESGLAISFVSASTEAHF 357

Query: 358 DAIEK 362
             IEK
Sbjct: 358 RLIEK 362


>gi|227886220|ref|ZP_04004025.1| ATP-dependent RNA helicase DbpA [Escherichia coli 83972]
 gi|227836424|gb|EEJ46890.1| ATP-dependent RNA helicase DbpA [Escherichia coli 83972]
 gi|307553405|gb|ADN46180.1| ATP-independent RNA helicase DbpA [Escherichia coli ABU 83972]
          Length = 457

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 219/377 (58%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+  ++C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W     +S   PLE
Sbjct: 363 KLNWQTLPANSSIVPLE 379


>gi|26247679|ref|NP_753719.1| ATP-dependent RNA helicase DbpA [Escherichia coli CFT073]
 gi|26108081|gb|AAN80281.1|AE016760_140 ATP-independent RNA helicase dbpA [Escherichia coli CFT073]
          Length = 457

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 219/377 (58%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+  ++C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W     +S   PLE
Sbjct: 363 KLNWQTLPANSSIVPLE 379


>gi|333024583|ref|ZP_08452647.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
 gi|332744435|gb|EGJ74876.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
          Length = 527

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 128/340 (37%), Positives = 203/340 (59%), Gaps = 22/340 (6%)

Query: 41  VCGIAQTGTGKTASFVLPML---TI---LEKGRAR----VRMPRTLILEPTRELAAQVAD 90
           + G A+TGTGKT  F LP+L   T+   +E GRA        P+ L++ PTREL  QV +
Sbjct: 1   MIGQAKTGTGKTLGFGLPLLERVTVAADVEAGRATPDKLSEAPQALVVVPTRELCTQVTN 60

Query: 91  NFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEIL 150
           + +  GK  ++ V  + GG  +E Q + L++G DV++ TPGR+LD   + KL ++ +  L
Sbjct: 61  DLQTAGKVRDVRVLAIYGGRAYEPQVEALKKGVDVVVGTPGRLLDLAGQRKLDLSKVRAL 120

Query: 151 VIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           V+DEAD MLD+GF+P ++ I +++P  RQT+LFSATM   +  ++  ++  P  I   +P
Sbjct: 121 VLDEADEMLDLGFLPDVEKIVAMLPVKRQTMLFSATMPGAVVSLARRYMSQPTHINATSP 180

Query: 211 ----SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI--IFCNQKKNVVNLCHS 264
               ++ A T +H F    A    K  ++ ++LQ++     G+  IFC  K+   ++   
Sbjct: 181 DDEGATVANTEQHVF---RAHSMDKPEMVARILQAE---GRGLVMIFCRTKRTAADISEQ 234

Query: 265 LEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPN 324
           L+++GF+  A+HG++ Q +R + L  F+ G + ++V +D+AARG+D+  V HV N+  P 
Sbjct: 235 LQRRGFAAGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQTPE 294

Query: 325 RAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
             + Y+HRIGRTGRAGR G A TLV  +DI     I K +
Sbjct: 295 DEKTYLHRIGRTGRAGRSGTAVTLVDWDDIPRWQLINKAL 334


>gi|325916975|ref|ZP_08179217.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536826|gb|EGD08580.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
          Length = 458

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 145/381 (38%), Positives = 214/381 (56%), Gaps = 9/381 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ L LSP +   +   GY   TPIQ +++P +LQ  DV   A TG+GKTA+F L +L 
Sbjct: 3   EFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+    R +    L+L PTRELA QV     K      N+ + +L GG+P   Q   LE
Sbjct: 63  KLDPALTRAQ---ALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 119

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I S     RQ
Sbjct: 120 AHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT  D ++ ++   L++P  I V    +  E I+  F      Y +K A+   LL
Sbjct: 180 SLLFSATFPDIIRTLAREILKDPVEITVEGADNAPE-IDQQFFEVDPTYRQK-AVAGLLL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +     ++ ++FCN +K V  +  SL++ GFS  A+HG+++QR R ++L  F   +  ++
Sbjct: 238 RFNP--ESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+HG A +LVA  +     A
Sbjct: 296 VASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPREAARAQA 355

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           +E    + + W    L++  P
Sbjct: 356 LEAEQGQPLKWSRAPLATARP 376


>gi|21231720|ref|NP_637637.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768154|ref|YP_242916.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188991291|ref|YP_001903301.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21113422|gb|AAM41561.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573486|gb|AAY48896.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167733051|emb|CAP51249.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris]
          Length = 458

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 145/381 (38%), Positives = 214/381 (56%), Gaps = 9/381 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ L LSP +   +   GY   TPIQ +++P +LQ  DV   A TG+GKTA+F L +L 
Sbjct: 3   EFSALPLSPALAPGIDALGYTTLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+    R +    L+L PTRELA QV     K      N+ + +L GG+P   Q   LE
Sbjct: 63  KLDPALTRAQ---ALVLCPTRELADQVGKQLRKLATGIPNMKLLVLTGGMPLGPQLASLE 119

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I S     RQ
Sbjct: 120 AHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT  D ++ ++   L++P  I V    +  E I+  F      Y +K A+   LL
Sbjct: 180 SLLFSATFPDIIRTLARELLKDPVEITVEGADNAPE-IDQQFFEVDPTYRQK-AVAGLLL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +     ++ ++FCN +K V  +  SL++ GFS  A+HG+++QR R ++L  F   +  ++
Sbjct: 238 RFNP--ESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+HG A +LVA  +     A
Sbjct: 296 VASDVAARGLDVEDLAAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRESARAQA 355

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           +E    + + W    L++  P
Sbjct: 356 LEAEHGQPLKWSRAPLATARP 376


>gi|74006744|ref|XP_861568.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 12 [Canis familiaris]
          Length = 653

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 141/383 (36%), Positives = 219/383 (57%), Gaps = 16/383 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 182 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      E  RA  + P +L+L PTRELA Q+ +   K+     +   ++ GG     Q 
Sbjct: 242 IYSDGPGEALRAMKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI 301

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---SL 173
           + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I+ I    ++
Sbjct: 302 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 361

Query: 174 VP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V  + + S K 
Sbjct: 362 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV--WVEESDKR 419

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR R + L  F+
Sbjct: 420 SFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 479

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G A +   + 
Sbjct: 480 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER 539

Query: 353 DIKHI-DAIEKLIEKKVD---WL 371
           +I    D ++ L+E K +   WL
Sbjct: 540 NINITKDLLDLLVEAKQEVPSWL 562


>gi|85060366|ref|YP_456068.1| ATP-dependent RNA helicase RhlB [Sodalis glossinidius str.
           'morsitans']
 gi|123518632|sp|Q2NQB2|RHLB_SODGM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|84780886|dbj|BAE75663.1| ATP-dependent RNA helicase [Sodalis glossinidius str. 'morsitans']
          Length = 415

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 138/373 (36%), Positives = 213/373 (57%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P +V  +   G+   TPIQ  T+P  L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALYPPIVEVLDSKGFNNCTPIQALTLPTTLAGKDVAGQAQTGTGKTLAFLTATFHH 70

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L      +GR +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 71  LLTHPAAEGR-QTNQPRALIMAPTRELAVQIHSDAEPLAQATGLKMGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+L+ T GR++D+  +  + M+ I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLEAGVDILVGTTGRLIDYTKQNYVNMSAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAA 189

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R  +LFSAT++  +++++   + N + +EV     T   I+      Y    +K  LL
Sbjct: 190 AGRLNMLFSATLSYRVRELAFEHMNNAEYVEVEPLQKTGHRIQEELF--YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F +G 
Sbjct: 248 QTLIE-EEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVSQKRRLRILEKFTQGA 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGCSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I  ++
Sbjct: 367 NLTAIESYIGHQI 379


>gi|330923108|ref|XP_003300102.1| hypothetical protein PTT_11258 [Pyrenophora teres f. teres 0-1]
 gi|311325897|gb|EFQ91780.1| hypothetical protein PTT_11258 [Pyrenophora teres f. teres 0-1]
          Length = 516

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 214/370 (57%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FADLG+  ++  A  +  +  PTPIQ + IPL L+  DV G+A+TG+GKTA+FVLP+L +
Sbjct: 88  FADLGIREELCDACENLKFKNPTPIQTQAIPLALEGRDVIGLAETGSGKTAAFVLPILQS 147

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEK +        LIL PTRELA Q+A   +  G   N+  A L+GG+    Q   L +
Sbjct: 148 LLEKPQPLF----GLILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSK 203

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQ 179
              +++ TPGR+LDH    K   + +++ +V+DEADR+LD+ F P +  I  ++P   R 
Sbjct: 204 RPHIVVATPGRLLDHLENTKGFSLKHLKYMVLDEADRLLDLDFGPVLDKILKVLPREGRH 263

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM+ +++ +    LQNP R+ +   SS++  +    +  YA    K   L  + 
Sbjct: 264 TYLFSATMSSKVENLQRAALQNPVRVSI---SSSSHQVVSTLLQRYAFIPHKYKDLYLIH 320

Query: 240 QSQDTMKN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              D + +  IIF         +   L   GF    +HG + Q +R+  L+ FK  +  +
Sbjct: 321 LLNDNIGHPTIIFTRTVNETQRIAVLLRALGFGAIPLHGQLSQSARLGALNKFKSKSRDI 380

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIP V  + NFD+P+ ++ Y+HR+GRT RAG+ GKA + V + D++   
Sbjct: 381 LVATDVAARGLDIPAVDLIVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQYDLEIWL 440

Query: 359 AIEKLIEKKV 368
            IE  + KK+
Sbjct: 441 RIEHALGKKI 450


>gi|303278630|ref|XP_003058608.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459768|gb|EEH57063.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 471

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 135/364 (37%), Positives = 207/364 (56%), Gaps = 17/364 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ L+ K++  +    Y KPTPIQ + IP++L   DV G A+TG+GKTA+F +PM+  
Sbjct: 48  FEDMMLNAKILLDIRFHEYDKPTPIQAQAIPIILSGRDVLGCAETGSGKTAAFSIPMIQH 107

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            LE+    R   P  +++ PTRELA Q+   A  F +  K +  T+  ++GG     Q  
Sbjct: 108 CLEQDPIKRGDGPFAIVMAPTRELAQQIEKEAKVFSRSSKGFKTTI--VVGGTNMSDQRS 165

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +G +V + TPGR++DH ++G   +  + ++++DEADRMLDMGF P I+ +   +P  
Sbjct: 166 DLRQGVEVCVATPGRLIDHLHQGNTNLGRVSLVILDEADRMLDMGFEPQIREVMQNLPTP 225

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQ-YSKKCALL 235
            QTLLFSATM  E++ ++ ++L  P +++V   S  TA   +H      AQ   + C LL
Sbjct: 226 HQTLLFSATMPAEVESLAADYLNKPVKVKVGAVSVPTANVAQHLEKLVDAQKVDRLCELL 285

Query: 236 QQLLQSQDTMKNG------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
             L +  +  K G      ++F  +K     +   L  +G S  A HG   Q+ R   LS
Sbjct: 286 --LEEKAEAEKFGGSLPMTVVFVERKARADEVMELLNAEGVSAAAFHGGRSQQEREAALS 343

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++K G   ++ A+D+AARGLD+  + HV N D+P   E+Y+HR+GRTGRAG  G+A +  
Sbjct: 344 DYKNGKCSVLCATDVAARGLDVKGIAHVVNLDMPRMFEDYVHRVGRTGRAGMTGRATSFY 403

Query: 350 AKED 353
              D
Sbjct: 404 TDRD 407


>gi|332293602|ref|YP_004432211.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171688|gb|AEE20943.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 452

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 208/370 (56%), Gaps = 6/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   +  A+ D G+ +PTPIQ+  +  V+   DV GIAQTGTGKT +++LP+L
Sbjct: 1   MTFKDLNLDKFLWNALDDMGFTQPTPIQVDALAPVMSGGDVVGIAQTGTGKTYAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   R     PR LIL PTREL  QV    EK     ++ VA + GG     Q   + 
Sbjct: 61  RTLPYSRQE--NPRVLILVPTRELVLQVVSELEKLTTYIDVRVAGVYGGANINTQKALIA 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TPGR+ D      L + +I+ +VIDE D MLD+GF P + NI  ++P  RQ 
Sbjct: 119 QGQDIVVATPGRLYDLAVSRVLQLKSIQKVVIDEVDVMLDLGFRPQLMNIFDILPKRRQH 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSATMT+++  + ++F   P+ I V    +  E I          Y+K   LL++L  
Sbjct: 179 IMFSATMTEDVDALIKDFFSTPQFIRVAKSGTPLENITQIGYKMPNFYTKVNFLLEELAF 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGF--SVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           S+   K  ++F   K+    L   LE + F   V  IH N  Q  R+  ++ F +G +++
Sbjct: 239 SKKYPKT-LLFVRDKRMADRLYLKLE-EAFPGDVDLIHSNKTQNYRINSINAFAKGKVRM 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+ ARGLDI D+ HV N + P   ENY+HRIGRTGRA + G +  L   E+ +++ 
Sbjct: 297 MVATDVMARGLDIDDITHVININTPRFPENYLHRIGRTGRAQKEGVSIVLSTPEEDEYLA 356

Query: 359 AIEKLIEKKV 368
            IE L+  KV
Sbjct: 357 EIEALMGVKV 366


>gi|254429992|ref|ZP_05043699.1| DbpA RNA binding domain family [Alcanivorax sp. DG881]
 gi|196196161|gb|EDX91120.1| DbpA RNA binding domain family [Alcanivorax sp. DG881]
          Length = 459

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 139/379 (36%), Positives = 215/379 (56%), Gaps = 10/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L LS +++  +   GY   TP+Q +++P VL+ HDV   A TG+GKTA+F L +L  
Sbjct: 6   FASLPLSAELLANLNTLGYATMTPVQAQSLPFVLKGHDVIAQASTGSGKTAAFGLGLLHP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L     R    + L+L PTRELA QVA    +  +   N+ V  L GG P   Q   LE 
Sbjct: 66  LNP---RYYGCQALVLCPTRELADQVAGEIRRLARGPGNIKVLTLCGGQPIGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+L H ++G L +  +  LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 123 GAQIVVGTPGRVLKHLSKGTLSLEGLNTLVLDEADRMLDMGFYDSIAEVIRQTPSRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++E F+ NP+ +EV      ++  +  +    A+  +  A      + 
Sbjct: 183 LFSATYPAGIKQLAETFMNNPQHVEVEALHDNSQIEQRYYEVDPAEREEAVARAIACFRP 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++FC  KK   ++ + L +QG S   ++ +++QR R ++L+ F   ++ ++VA
Sbjct: 243 VSC----VVFCVTKKQCQDVVNQLCRQGMSAMVLNSDLEQRERDEVLTLFANRSLSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++  V N ++ +  + +IHR+GRTGRAG  G A  LVA  + +   AIE
Sbjct: 299 TDVAARGLDIDNLDMVINAELSHEPQTHIHRVGRTGRAGEKGLAINLVAPRESRRAMAIE 358

Query: 362 KLIEKKVDWLNGDLSSLNP 380
           +L    ++W    +SSL P
Sbjct: 359 ELQGAPLNW--HPVSSLKP 375


>gi|311106059|ref|YP_003978912.1| ATP-independent RNA helicase DbpA [Achromobacter xylosoxidans A8]
 gi|310760748|gb|ADP16197.1| ATP-independent RNA helicase DbpA [Achromobacter xylosoxidans A8]
          Length = 462

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 144/383 (37%), Positives = 218/383 (56%), Gaps = 10/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P ++  +   G+ + TPIQ +++PL+L+  D+   A+TG+GKTA+F L +L  
Sbjct: 6   FTSLPLLPALLDNLKSLGFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+  R     P+ L++ PTRELA QVA    +  +   N+ +  L GG     Q + L R
Sbjct: 66  LDPTRL---TPQALLVCPTRELADQVAQELRRLARQIANVKILTLCGGAAARPQAESLAR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGRI DH  RG L ++ +  LV+DEADRM+DMGF   I  I S  P  RQTL
Sbjct: 123 GTHLVVGTPGRIQDHLERGSLDLSGLNTLVLDEADRMVDMGFYDDIVAIASHCPTKRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D ++K+S  FL+NP  ++V      A  IE  F   Y    K        L +
Sbjct: 183 LFSATYPDNIRKLSARFLRNPAEVKVEA-QHDASRIEQIF---YEIDDKDRLDAVTRLLA 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ + FCN K    +L   L+ +G S  A++G+++QR R +IL  F   +  ++VA
Sbjct: 239 HFRPESTLAFCNTKIRSHDLVERLQAEGISAQALNGDLEQRERDEILIQFANRSCAVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++G V N DV    E ++HRIGR+GR  + G A +L + E+++  + IE
Sbjct: 299 TDVAARGLDIQNLGAVINVDVTKDTEVHVHRIGRSGRGEQKGLALSLCSPEEMRWANLIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
           +     + W  GD+ +L P  ++
Sbjct: 359 QYQGAPLVW--GDIKTLRPKADR 379


>gi|224010271|ref|XP_002294093.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220970110|gb|EED88448.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 471

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 133/363 (36%), Positives = 203/363 (55%), Gaps = 20/363 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  +   V+  V+  G+ KPTPIQ +  P+ L+  ++ GI+ TG+GKT +F+LP +
Sbjct: 69  MTFEEASMPEYVLSEVIKCGFDKPTPIQSQGWPMALKGKNMVGISATGSGKTLAFLLPAM 128

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   L+ G      P  L+L PTRELA Q+ +  +K+G +  +   ++ GG+P   
Sbjct: 129 IHINAQQYLKPGEG----PIVLVLAPTRELAVQIKEECDKFGASSEIKNTVVYGGVPKSK 184

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L  G +++I TPGR++DH  +G   +  +  LV+DEADRMLDMGF P ++ I S +
Sbjct: 185 QVRSLREGVEIVIATPGRLIDHLEQGNTNLKRVTYLVLDEADRMLDMGFEPQLRKIVSQI 244

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT-----PSSTAETIEHCFVATYAQYS 229
              RQ L++SAT   E+Q ++ ++L +  ++ V +          + I+ C  +   +Y 
Sbjct: 245 RPDRQVLMWSATWPKEVQNLARDYLSDFYQVTVGSLDLAGNKDVTQMIDVC--SDQDKYR 302

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
                L++ L S+D +   ++F   KK    L  SL   GF   A+HG+  Q  R  +L 
Sbjct: 303 NLLRYLRENLTSKDRV---LVFVETKKGCDMLTRSLRMDGFQARAMHGDKSQEERDWVLR 359

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK     L+VA+D+AARGLD+ D+  V NFD PN  E YIHRIGRTGRAG+ G A +  
Sbjct: 360 EFKSCQATLLVATDVAARGLDVDDIKMVVNFDFPNDTETYIHRIGRTGRAGKKGFAVSFF 419

Query: 350 AKE 352
             E
Sbjct: 420 VTE 422


>gi|212537643|ref|XP_002148977.1| ATP dependent RNA helicase (Dbp1), putative [Penicillium marneffei
           ATCC 18224]
 gi|210068719|gb|EEA22810.1| ATP dependent RNA helicase (Dbp1), putative [Penicillium marneffei
           ATCC 18224]
          Length = 692

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 136/363 (37%), Positives = 203/363 (55%), Gaps = 22/363 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 198 FTNPPLDDHLIANIALARYTTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 257

Query: 63  LEK----------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
             +                GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 258 AFQTGPSAAPAPAAGGNFYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVV 317

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 318 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLTNIKYLVLDEADRMLDMGFEPQ 377

Query: 167 IQNITSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 378 IRRIVEGEDMPQVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQRI- 436

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             Y +   K ++L  +L +  +    +IF   K+   +LC  L  Q F   AIHG+  QR
Sbjct: 437 -EYVEDHDKRSVLLDILHTHGSTGLTLIFVETKRMADSLCDFLINQNFPATAIHGDRTQR 495

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+     ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 496 ERERALEMFRNARCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 555

Query: 343 GKA 345
           G A
Sbjct: 556 GIA 558


>gi|145601979|ref|XP_001403327.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|152013478|sp|A4QSS5|DBP2_MAGO7 RecName: Full=ATP-dependent RNA helicase DBP2
 gi|145010431|gb|EDJ95087.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 548

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 132/363 (36%), Positives = 202/363 (55%), Gaps = 13/363 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 127 FDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 186

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 187 INAQPLLAPGDG----PIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQI 242

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 243 RDLSRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 302

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL-- 234
            RQTL++SAT   E++ ++ +FLQ+  ++ + +   +A       V   ++  K+  +  
Sbjct: 303 DRQTLMWSATWPKEVRNMAADFLQDFIQVNIGSLDLSANHRITQIVEVVSESEKRDRMIR 362

Query: 235 -LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            +++++  +D+    +IF   K+    +   L + G+   +IHG+  Q  R  +L  FK 
Sbjct: 363 HMEKVMDGKDSKNKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKT 422

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +MVA+D+A+RG+D+ ++ HV N+D PN +E+YIHRIGRTGRAG  G A T    E+
Sbjct: 423 GKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTEN 482

Query: 354 IKH 356
            K 
Sbjct: 483 SKQ 485


>gi|332023103|gb|EGI63364.1| Putative ATP-dependent RNA helicase DDX23 [Acromyrmex echinatior]
          Length = 789

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 208/379 (54%), Gaps = 41/379 (10%)

Query: 10  PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI------ 62
           PK +  ++D  GY   TPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L        
Sbjct: 369 PKEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLLWITSLPK 428

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E+     + P ++IL PTRELA Q+ +   K+G+   +   +++GG+  E Q  +L  G
Sbjct: 429 IERLEEADQGPYSIILAPTRELAQQIEEETNKFGQPLGIRTVVVVGGLSREEQGFRLRMG 488

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177
            +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P T     
Sbjct: 489 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 548

Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTA 214
                               RQT++F+ATM   +++++  +L+ P  +    V  P+   
Sbjct: 549 NEDAENEEKLLANYNTKKKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSVGKPTERT 608

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           E I H       +  K+  L++ L  S+      IIF NQKK    L   LEK G++ C 
Sbjct: 609 EQIVHIM----GEADKRKKLMEIL--SRGVEPPVIIFVNQKKGADVLARGLEKLGYNACT 662

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG   Q  R   L++ K G+  ++VA+D+A RG+DI DV  V N+D+    E+Y HRIG
Sbjct: 663 LHGGKGQEQREYALASLKSGSKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIG 722

Query: 335 RTGRAGRHGKAFTLVAKED 353
           RTGRAG+ G A +   K+D
Sbjct: 723 RTGRAGKAGLAISFCTKDD 741


>gi|301348040|ref|ZP_07228781.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AB056]
 gi|301596797|ref|ZP_07241805.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AB059]
          Length = 344

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 134/344 (38%), Positives = 204/344 (59%), Gaps = 12/344 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++  A+   G+ + TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 5   FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     ++ R R   PR LIL PTRELA Q+  + +   K  NL +  L+GG+ F+ Q K
Sbjct: 65  LLNNPVQEQRFRGE-PRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKK 123

Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +L+    D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P 
Sbjct: 124 QLDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPR 183

Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTL+FSAT T ++  ++  +L  P  +E+     T   +E        Q   K  L
Sbjct: 184 KEQRQTLMFSATFTYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQ--DKYRL 241

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ +L+ ++ +   +IF N++  V  L   L+K G+ V  + G I Q  R+K+L  FK+G
Sbjct: 242 LQDILR-EEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQG 300

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
              +M+A+D+A RG+ +  V HV NF +P ++++Y+HRIGRTGR
Sbjct: 301 KHNIMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGR 344


>gi|300717997|ref|YP_003742800.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
 gi|299063833|emb|CAX60953.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
          Length = 443

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 143/391 (36%), Positives = 220/391 (56%), Gaps = 12/391 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ A+ + GY +PT IQ   IP  L+  DV G A TGTGKTA+++LP+L  
Sbjct: 6   FSELELDESLLKALQEKGYTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPVLQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVAD   +  K  +L +A + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRVLILTPTRELAMQVADQARELAKYTHLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DV++ T GR+L +          +E L++DEADRMLDMGF   I+ I +   + +QTL
Sbjct: 126 NQDVVVATTGRLLQYIKEENFDCRAVESLILDEADRMLDMGFAQDIETIAAETRWRKQTL 185

Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  D ++  SE  L  P+ IE +      + I   +         K ALL  +L+
Sbjct: 186 LFSATLEGDAIKDFSERLLNEPEEIEADPARRERKKILQWYYRA-DDVKHKTALLIHMLK 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   ++F  +++ V  LC  L + G +   + G ++Q  R + +    +G + ++V
Sbjct: 245 -QPEVTRSVVFVRKRERVHELCGWLREAGINTSYLEGELEQFKRNEAIKRVVDGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HVFNFD+P  ++ Y+HRIGRTGRAG+ G A +LV   D   +  +
Sbjct: 304 ATDVAARGIDIEDVSHVFNFDMPRTSDTYLHRIGRTGRAGKKGIAISLVEAHDNVLLGKV 363

Query: 361 EKLIE-----KKVDWLNGDLSSLNPPLEKID 386
            + I+     + +D L     +  PP EK++
Sbjct: 364 TRYIKEPLKSRTIDELR---PTTRPPSEKLN 391


>gi|223649022|gb|ACN11269.1| Probable ATP-dependent RNA helicase DDX5 [Salmo salar]
          Length = 614

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 203/364 (55%), Gaps = 13/364 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      V+  +  AG+ +PTPIQ +  PL L   D+ GIAQTG+GKT S++LP +
Sbjct: 94  MKFHEASFPTYVMDVINKAGWSEPTPIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAI 153

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +YG+   L    + GG P   
Sbjct: 154 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYGRASRLKSVCVYGGAPKGP 209

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L+RG ++ I TPGR++D    GK  M     LV+DEADRMLDMGF P I+ I   +
Sbjct: 210 QLRDLDRGVEICIATPGRLIDFLEAGKTNMRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 269

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++  +I V     S+    ++   V    +   K 
Sbjct: 270 RPDRQTLMWSATWPKEVRQLAEDFLKDYVQINVGALQLSANHNILQIVDVCNDGEKEDKL 329

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  IIF   K+    +   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 330 LRLLEEIMSEKENKT-IIFTETKRRCDEITRRMRRDGWPAMGIHGDKSQQERDWVLNEFK 388

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V NFD PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 389 FGKAPILIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPN 448

Query: 353 DIKH 356
           +++ 
Sbjct: 449 NMRQ 452


>gi|187933251|ref|YP_001885671.1| cold-shock deAd box protein a [Clostridium botulinum B str. Eklund
           17B]
 gi|187721404|gb|ACD22625.1| cold-shock deAd box protein a [Clostridium botulinum B str. Eklund
           17B]
          Length = 367

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 210/364 (57%), Gaps = 10/364 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  L ++  +V  +   G   PTPIQ ++IP +L   DV G A+TGTGKT +F+LP  
Sbjct: 1   MNFKSLEINENIVNILNKNGIKTPTPIQEESIPKILLGKDVIGEAKTGTGKTLAFLLP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I +         + LIL PTRELA Q+ +  +K   N ++ +    GG    +Q KKL+
Sbjct: 59  -IFQNISPNTNGTQVLILSPTRELAIQITEETKKLNVNNDINILAAYGGKDIGSQLKKLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH  R  + ++ ++ +VIDEAD+ML MGF   I+ I        QT
Sbjct: 118 HNIHLVIATPGRLLDHIERKTIDLSKLKTIVIDEADQMLLMGFKNDIEKIMKAASKKHQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK--CALLQQL 238
           L FSATM  +++K++  ++ +P  I++ +P+   + I+   V T  ++ +   CA LQ  
Sbjct: 178 LCFSATMDSQVKKLAYRYMIDPLFIDIKSPTIAVDKIKQQVVETTDRWKQDSLCAALQ-- 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +D     IIFC  K+    L  +L ++G +   IH ++ Q  R +I+ +F+   IQ 
Sbjct: 236 ---EDNPFMAIIFCRTKRRADVLEIALHQKGLNCQKIHSDVPQAKRERIMKSFRNADIQY 292

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI  V H++N+D P   E+YIHRIGRTGRAG  G     VA +D   ++
Sbjct: 293 LIATDVAARGIDISGVSHIYNYDTPETPESYIHRIGRTGRAGEDGYTCMFVAPKDSYLLN 352

Query: 359 AIEK 362
           AIEK
Sbjct: 353 AIEK 356


>gi|299115674|emb|CBN75874.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 699

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 129/346 (37%), Positives = 202/346 (58%), Gaps = 14/346 (4%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILEKGRA-------RVR 71
           GY KPTP+Q  +IP+ +   D+   AQTG+GKTA F+ P ++++L +G         R  
Sbjct: 228 GYTKPTPVQKYSIPIGISNRDLMACAQTGSGKTAGFLFPTLISLLRRGGPQYPNDGRRKS 287

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
            P  L+L PTRELA+Q+ D   ++     +   ++ GG    +Q ++LERG D+L+ TPG
Sbjct: 288 YPVALVLAPTRELASQIYDEARRFCYRTGIAPVVIYGGADVRSQFRELERGCDLLVATPG 347

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR----QTLLFSATM 187
           R++D   RG++ +  I+ LV+DEADRMLDMGF P I+ I      TR    QT +FSAT 
Sbjct: 348 RLVDLLERGRISLACIQFLVLDEADRMLDMGFEPQIRRIVEEEDMTRVGERQTFMFSATF 407

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
             E+Q+++ +F+ +   + V    S ++ +       Y   ++K  +L + L + +    
Sbjct: 408 PREIQQLAADFMTDYIFLAVGRVGSASKDVTQ--TVEYVDQNQKFPMLLRTLNNLEATGL 465

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            ++F   K+N   L + L  QG+   +IHG+  QR R   L  FK GT  ++VA+D+AAR
Sbjct: 466 VLVFTETKRNADYLEYQLSDQGYPASSIHGDKTQREREDALRLFKTGTTPILVATDVAAR 525

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           GLDI +V  V N+D+P   ++Y+HRIGRTGR G  G A + + +++
Sbjct: 526 GLDINNVTQVINYDLPTNIDDYVHRIGRTGRVGNVGNALSFMNEKN 571


>gi|153831249|ref|ZP_01983916.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           623-39]
 gi|229522732|ref|ZP_04412148.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|229527951|ref|ZP_04417342.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|297579800|ref|ZP_06941727.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae RC385]
 gi|148873269|gb|EDL71404.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           623-39]
 gi|229334313|gb|EEN99798.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|229340717|gb|EEO05723.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|297535446|gb|EFH74280.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae RC385]
          Length = 452

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 139/389 (35%), Positives = 212/389 (54%), Gaps = 12/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   + PR LIL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 65  HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            RG   ++ TPGR+ DH +   L +  +E LV+DEADRMLD+GF   ++ I +     R 
Sbjct: 125 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   ++  ++   L  PKRI +   S   + I +H ++  +  +  K ALL 
Sbjct: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDH--KEALLD 242

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L   +  +  IIF   + +   L   L +      A+ GN++Q  R  I+  F+    
Sbjct: 243 RILADAE-YRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVF 301

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++V +D+A+RGLDIP V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D + 
Sbjct: 302 KILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWES 361

Query: 357 IDAIEKLIEKKVDW-----LNGDLSSLNP 380
              +E  +++++ +     L G    L P
Sbjct: 362 FKRVEAFLQQEIQFEVLAGLEGKFKGLKP 390


>gi|15600832|ref|NP_232462.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|153823246|ref|ZP_01975913.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae B33]
 gi|227811688|ref|YP_002811698.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
 gi|229506763|ref|ZP_04396272.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229510442|ref|ZP_04399922.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229517427|ref|ZP_04406872.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
 gi|229605237|ref|YP_002875941.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254850327|ref|ZP_05239677.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
 gi|298499926|ref|ZP_07009732.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae MAK 757]
 gi|9657444|gb|AAF95975.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126519233|gb|EAZ76456.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae B33]
 gi|227010830|gb|ACP07041.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
 gi|229345463|gb|EEO10436.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
 gi|229352887|gb|EEO17827.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229357114|gb|EEO22032.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229371723|gb|ACQ62145.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254846032|gb|EET24446.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
 gi|297541907|gb|EFH77958.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae MAK 757]
          Length = 452

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 139/389 (35%), Positives = 212/389 (54%), Gaps = 12/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   + PR LIL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 65  HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            RG   ++ TPGR+ DH +   L +  +E LV+DEADRMLD+GF   ++ I +     R 
Sbjct: 125 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   ++  ++   L  PKRI +   S   + I +H ++  +  +  K ALL 
Sbjct: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDH--KEALLD 242

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L   +  +  IIF   + +   L   L +      A+ GN++Q  R  I+  F+    
Sbjct: 243 RILADAE-YRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVF 301

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++V +D+A+RGLDIP V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D + 
Sbjct: 302 KILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWES 361

Query: 357 IDAIEKLIEKKVDW-----LNGDLSSLNP 380
              +E  +++++ +     L G    L P
Sbjct: 362 FKRVEAFLQQEIQFEVLAGLEGKFKGLKP 390


>gi|328717963|ref|XP_001951743.2| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Acyrthosiphon pisum]
          Length = 556

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 129/357 (36%), Positives = 201/357 (56%), Gaps = 3/357 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + G    ++  +   G+V+PT IQ +  P+ L  +++ GIA TG+GKT S+++P L  
Sbjct: 103 FDESGFPEIIIKELKKQGFVEPTAIQAQGWPIALSGNNLVGIASTGSGKTLSYIVPALIH 162

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R  +R   P  L+L PTRELA Q+    + +G  + ++   L GG P   Q   L 
Sbjct: 163 ISHQRKLSRGDGPIVLVLSPTRELAQQIQTVCDDFGDAFGVSSTCLFGGAPKGGQASDLS 222

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR+LD     +  M     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 223 RGVELVIATPGRLLDFLESERTNMCRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQV 282

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E++ ++E FL    +I + + +  A       V    +Y K+  L+  L +
Sbjct: 283 LMWSATWPKEVKNLAEEFLDEYIQINIGSLTLAANHNIQQIVEVCQEYDKETKLISLLKK 342

Query: 241 SQDTMKN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             D  +N  I+F   K+ V  +   +++ G+S   IHG+  Q  R  +L +F++    ++
Sbjct: 343 IMDEDENKTIVFIETKRRVDEITRKIKRHGYSAVCIHGDKSQYERDNVLKDFRDSRYPIL 402

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           VA+D+AARGLD+ DV  V NFD PN +E+Y+HRIGRTGR+ + G A+T   + + K 
Sbjct: 403 VATDVAARGLDVEDVKFVINFDYPNNSEDYVHRIGRTGRSHKTGTAYTFFTQSNAKQ 459


>gi|156389591|ref|XP_001635074.1| predicted protein [Nematostella vectensis]
 gi|156222164|gb|EDO43011.1| predicted protein [Nematostella vectensis]
          Length = 436

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 147/370 (39%), Positives = 214/370 (57%), Gaps = 12/370 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL+  +V   +  G  KPT IQ+  +P +LQ  D  G A+TG+GKTA+F LP+L  
Sbjct: 9   FAGLGLNKWLVSQCVAMGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQK 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L      +     ++L PTRELA Q+AD F+  G+   L  A+++GG+    Q   L   
Sbjct: 69  LCDDPYGIF---AVVLTPTRELAFQIADQFKVLGRPIGLKEAVIVGGLDMMKQALSLANK 125

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             V+I TPGR+ DH      L +  I+ LV+DEADR+LD  F   ++ I   VP  RQTL
Sbjct: 126 PHVVIATPGRLADHIKSTDTLNLKKIQFLVLDEADRLLDPSFGDDLKVIFDAVPEKRQTL 185

Query: 182 LFSATMTD---ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           LFSAT+TD   ELQK+S +    P   EV +  +T   ++  ++ T A + + C L+  L
Sbjct: 186 LFSATLTDTMGELQKMSGS---QPFSYEVQSDIATVAELDQRYLLTPA-HVRDCYLVH-L 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+  D  ++ I+F +  KN   L     K G +   +H  + Q  R+  L+ FK GTI++
Sbjct: 241 LRENDDNQSVIVFTHTCKNCQVLVSMFHKLGLTCVGLHSLLSQGERLAALARFKSGTIKI 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RGLDIP V  V N ++P   ++YIHR+GRT RAGR G A ++V + DI  + 
Sbjct: 301 LVATDVASRGLDIPQVELVVNSNIPADPKDYIHRVGRTARAGRGGMAISMVTQYDIDRVK 360

Query: 359 AIEKLIEKKV 368
            IE+ I  K+
Sbjct: 361 KIEEKINTKL 370


>gi|322834951|ref|YP_004214978.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
 gi|321170152|gb|ADW75851.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
          Length = 430

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 138/366 (37%), Positives = 212/366 (57%), Gaps = 11/366 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P  V A+   G+   TPIQ   +P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPLAVEALEKKGFHYCTPIQALALPITLAGRDVAGQAQTGTGKTLAFLASTFHY 70

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L      +GR +   PR LI+ PTRELA Q+  + E   ++  L + L  GG  ++ Q K
Sbjct: 71  LLSHPAAEGR-QTNQPRALIMAPTRELAVQIHSDAEALSESTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYTKQNHIDLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            Q L  LFSAT++  +++++   + N + IE+     T   I+      Y    +K  LL
Sbjct: 190 NQRLNMLFSATLSYRVKELAFENMNNAESIEIEPEQKTGHRIQEELF--YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R+++L +F +GT
Sbjct: 248 QTLIE-EEWPDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVPQKKRLRVLEDFTKGT 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGLSGHSISLACEEYAL 366

Query: 356 HIDAIE 361
           ++ AIE
Sbjct: 367 NLPAIE 372


>gi|281178534|dbj|BAI54864.1| ATP-dependent RNA helicase [Escherichia coli SE15]
          Length = 457

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 137/365 (37%), Positives = 213/365 (58%), Gaps = 8/365 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   A +   + L+L 
Sbjct: 22  GYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID---ASLFQTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF  Q   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT  + +  +S   
Sbjct: 139 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     + ++FCN KK  
Sbjct: 199 QRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPSSCVVFCNTKKEC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            ++C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ K++W     +S 
Sbjct: 315 NFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSS 374

Query: 379 NPPLE 383
             PLE
Sbjct: 375 IVPLE 379


>gi|189205104|ref|XP_001938887.1| ATP-dependent rRNA helicase rrp3 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187985986|gb|EDU51474.1| ATP-dependent rRNA helicase rrp3 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 517

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 214/370 (57%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FADLG+  ++  A  +  +  PTPIQ + IPL L+  DV G+A+TG+GKTA+FVLP+L +
Sbjct: 89  FADLGVREELCDACENLKFKNPTPIQTQAIPLALEGRDVIGLAETGSGKTAAFVLPILQS 148

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEK +        LIL PTRELA Q+A   +  G   N+  A L+GG+    Q   L +
Sbjct: 149 LLEKPQPLF----GLILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSK 204

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQ 179
              +++ TPGR+LDH    K   + +++ +V+DEADR+LD+ F P +  I  ++P   R 
Sbjct: 205 RPHIVVATPGRLLDHLENTKGFSLKHLKYMVLDEADRLLDLDFGPVLDKILKVLPREGRH 264

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM+ +++ +    LQNP R+ +   SS++  +    +  YA    K   L  + 
Sbjct: 265 TYLFSATMSSKVESLQRAALQNPVRVSI---SSSSHQVVSTLLQRYAFIPHKYKDLYLVH 321

Query: 240 QSQDTMKN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              D + +  IIF         +   L   GF    +HG + Q +R+  L+ FK  +  +
Sbjct: 322 LLNDNIGHPTIIFTRTVNETQRIAVLLRALGFGAIPLHGQLSQSARLGALNKFKSKSRDI 381

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIP V  + NFD+P+ ++ Y+HR+GRT RAG+ GKA + V + D++   
Sbjct: 382 LVATDVAARGLDIPAVDLIVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQYDLEIWL 441

Query: 359 AIEKLIEKKV 368
            IE  + KK+
Sbjct: 442 RIEHALGKKI 451


>gi|307202910|gb|EFN82130.1| Probable ATP-dependent RNA helicase DDX46 [Harpegnathos saltator]
          Length = 1034

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 210/363 (57%), Gaps = 7/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G++ K +  +   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 374 WAQCGVTKKELEVLKKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFRH 433

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL++   A    P  LI+ PTREL  Q+  + +K+ K+  L+   + GG     Q  +L+
Sbjct: 434 ILDQPPLADGDGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHVCVYGGTGISEQIAELK 493

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   V   
Sbjct: 494 RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIMENVRPD 553

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT   +++ ++   L  P  ++V   S   + +E   V    +  K   LL+ 
Sbjct: 554 RQTVLFSATFPRQMEALARRILTRPVEVQVGGRSVVCKDVEQ-HVVVLEEDQKFYKLLEI 612

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   QD   + IIF ++++N   L   L K  +S  ++HG IDQ  R   + +FK G  +
Sbjct: 613 LGHYQDK-GSAIIFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTILDFKAGRTK 671

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  E  ++ 
Sbjct: 672 LLVATSVAARGLDVKHLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITSEQERYA 731

Query: 358 DAI 360
             I
Sbjct: 732 GDI 734


>gi|260771156|ref|ZP_05880083.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii CIP 102972]
 gi|260613753|gb|EEX38945.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii CIP 102972]
 gi|315179238|gb|ADT86152.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii NCTC 11218]
          Length = 414

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 207/368 (56%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P ++ A+ + G+ +PT +Q + IP  L   DV   A TGTGKTA+FV+P L  
Sbjct: 5   FADLELDPNLLEAIEEMGFERPTQVQAEAIPHALDGRDVLASAPTGTGKTAAFVIPALQF 64

Query: 63  LEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+   R +    R LIL PTRELA Q+ +   +  K   L +  + GG+ ++     L  
Sbjct: 65  LQDFPRKKAGPARILILTPTRELAMQITEQARELAKYTKLNIFTITGGVQYQEHADILAT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L++    +     IE L++DEADRMLDMGF P +  +++   + +QT+
Sbjct: 125 TQDIVVATPGRLLEYIEAERFDCRAIEWLILDEADRMLDMGFGPVVDRLSAECRWRKQTM 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+    ++  + + L+ P  +    P    + I   +       + K  LL+ +L 
Sbjct: 185 LFSATLEGRGVEGFTADLLKEPAEVNAEPPRRERKKISQWY-HRADDMNHKLELLKAILT 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   +  I+F   ++ +  +   LE    +   I G + Q  R   +S F++G++ +++
Sbjct: 244 QQS--ERAIVFFKTRERLAEVRAVLESAQIACSWIQGEMPQDRRNNAISRFRDGSVNILL 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+PDV HV NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D   +D +
Sbjct: 302 ATDVAARGIDVPDVSHVINFDLPRSADVYLHRIGRTARAGKKGIAISLVEAHDQPMMDRV 361

Query: 361 EKLIEKKV 368
            + +++ +
Sbjct: 362 ARYLKEDI 369


>gi|218700063|ref|YP_002407692.1| ATP-dependent RNA helicase DbpA [Escherichia coli IAI39]
 gi|218370049|emb|CAR17825.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           IAI39]
          Length = 457

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 218/377 (57%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +    +IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPSIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L   G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNDIGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W     +S   PLE
Sbjct: 363 KLNWQTPPANSSIVPLE 379


>gi|195061826|ref|XP_001996076.1| GH14289 [Drosophila grimshawi]
 gi|193891868|gb|EDV90734.1| GH14289 [Drosophila grimshawi]
          Length = 746

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 141/389 (36%), Positives = 212/389 (54%), Gaps = 12/389 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF++  L   VV  +   GY  PTPIQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 300 DFSEAYLPDYVVKEIRRQGYKSPTPIQAQGWPIAMSGANFVGIAKTGSGKTLGYILPAIV 359

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +  ++   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 360 HINNQQPLQRGEGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 419

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 420 QRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 479

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+++++E+FL N  +I + +   +A       V    ++SK+  L   L 
Sbjct: 480 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEDKLKSLLS 539

Query: 240 QSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
              DT +N    IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G  
Sbjct: 540 DIYDTSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 599

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + K 
Sbjct: 600 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 659

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
             ++       VD L      +NP LE +
Sbjct: 660 AKSL-------VDVLKEANQEINPALENL 681


>gi|24374367|ref|NP_718410.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24348927|gb|AAN55854.1|AE015722_4 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 449

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 137/370 (37%), Positives = 207/370 (55%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L  +++ ++   G   PT IQ + +P+ L   D+   ++TG+GKT +F+LP L
Sbjct: 1   MQFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   RA   R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRVISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            +    ++ TPGRI DH  +  L +N +E+L++DEADRMLD+GF P ++ I       R 
Sbjct: 121 AKEPHFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKRR 180

Query: 179 QTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   E+ +++   L+NP  + + T  +  + I +  ++  +  +  K ALL 
Sbjct: 181 QTLMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCDHLDH--KEALLS 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL S ++ K  IIF   + +   L   L  QGF+  A+ G + Q +R +I+  F  G  
Sbjct: 239 RLL-SDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQ 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D   
Sbjct: 298 QILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDS 357

Query: 357 IDAIEKLIEK 366
              ++  + K
Sbjct: 358 FKKVQLFLRK 367


>gi|307201507|gb|EFN81270.1| Probable ATP-dependent RNA helicase DDX23 [Harpegnathos saltator]
          Length = 679

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 208/379 (54%), Gaps = 41/379 (10%)

Query: 10  PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI------ 62
           PK +  ++D  GY   TPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L        
Sbjct: 259 PKEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLLWITSLPK 318

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E+     + P ++IL PTRELA Q+ +   K+G+   +   +++GG+  E Q  +L  G
Sbjct: 319 IERLEEADQGPYSIILAPTRELAQQIEEETNKFGQPLGIRTVVVVGGLSREEQGFRLRMG 378

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177
            +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P T     
Sbjct: 379 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 438

Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTA 214
                               RQT++F+ATM   +++++  +L+ P  +    V  P+   
Sbjct: 439 NEDAENEEKLLANYNTKKKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSVGKPTERT 498

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           E I H       +  K+  L++ L  S+      IIF NQKK    L   LEK G++ C 
Sbjct: 499 EQIVHIM----GEADKRKKLMEIL--SRGVEPPVIIFVNQKKGADVLARGLEKLGYNACT 552

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG   Q  R   L++ K G+  ++VA+D+A RG+DI DV  V N+D+    E+Y HRIG
Sbjct: 553 LHGGKGQEQREYALASLKSGSKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIG 612

Query: 335 RTGRAGRHGKAFTLVAKED 353
           RTGRAG+ G A +   K+D
Sbjct: 613 RTGRAGKAGLAISFCTKDD 631


>gi|229526303|ref|ZP_04415707.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
 gi|229336461|gb|EEO01479.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
          Length = 452

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 139/389 (35%), Positives = 212/389 (54%), Gaps = 12/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   + PR LIL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 65  HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            RG   ++ TPGR+ DH +   L +  +E LV+DEADRMLD+GF   ++ I +     R 
Sbjct: 125 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   ++  ++   L  PKRI +   S   + I +H ++  +  +  K ALL 
Sbjct: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDH--KEALLD 242

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L   +  +  IIF   + +   L   L +      A+ GN++Q  R  I+  F+    
Sbjct: 243 RILADAE-YRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQTQRNTIMGQFERAVF 301

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++V +D+A+RGLDIP V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D + 
Sbjct: 302 KILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWES 361

Query: 357 IDAIEKLIEKKVDW-----LNGDLSSLNP 380
              +E  +++++ +     L G    L P
Sbjct: 362 FKRVEAFLQQEIQFEVLAGLEGKFKGLKP 390


>gi|254284787|ref|ZP_04959754.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           AM-19226]
 gi|150425572|gb|EDN17348.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           AM-19226]
          Length = 452

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 139/389 (35%), Positives = 212/389 (54%), Gaps = 12/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   + PR LIL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 65  HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            RG   ++ TPGR+ DH +   L +  +E LV+DEADRMLD+GF   ++ I +     R 
Sbjct: 125 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   ++  ++   L  PKRI +   S   + I +H ++  +  +  K ALL 
Sbjct: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDH--KEALLD 242

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L   +  +  IIF   + +   L   L +      A+ GN++Q  R  I+  F+    
Sbjct: 243 RILADAE-YRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQTQRNTIMGQFERAVF 301

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++V +D+A+RGLDIP V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D + 
Sbjct: 302 KILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWES 361

Query: 357 IDAIEKLIEKKVDW-----LNGDLSSLNP 380
              +E  +++++ +     L G    L P
Sbjct: 362 FKRVEAFLQQEIQFEVLAGLEGKFKGLKP 390


>gi|171690518|ref|XP_001910184.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945207|emb|CAP71318.1| unnamed protein product [Podospora anserina S mat+]
          Length = 924

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 137/391 (35%), Positives = 214/391 (54%), Gaps = 38/391 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPLVL+R DV G+A+TG+GKTA+FV+PM+  
Sbjct: 90  FQAMGLNANLLRAITKKGFSVPTPIQRKTIPLVLERRDVVGMARTGSGKTAAFVIPMIER 149

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L KG +     R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q  ++   
Sbjct: 150 L-KGHSPKVGARALILSPSRELALQTLKVVKELGRGTDLKTILLVGGDSLEEQFAQMATN 208

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 209 PDIVIATPGRFLHLKVEMNLNLSSIKYVVFDEADRLFEMGFAEQLTEILHALPSSRQTLL 268

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
           FSAT+   L + +   LQ P  + ++  +  +  +E  F +      K+ ALL  L    
Sbjct: 269 FSATLPSSLVEFARAGLQEPSLVRLDAETKVSPDMESAFFSVKGG-EKEGALLHILHDII 327

Query: 239 --------------------------------LQSQDTMKNGIIFCNQKKNVVNLCHSLE 266
                                            + + T  + IIF   K +V  + H L 
Sbjct: 328 KMPMGTPEGAPKDEADPNNSRGKRKRGSDRLSFKEKPTAHSTIIFTATKHHVEYIAHLLR 387

Query: 267 KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
             GF+V  I+G++DQ +R   + +F+ G   ++V +D+AARG+DIP + +V N+D P + 
Sbjct: 388 HAGFAVSYIYGSLDQTARKIQVDDFRRGRTNILVVTDVAARGIDIPVLANVINYDFPPQP 447

Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           + ++HR+GRT RAG+ G A+ LV + D+ ++
Sbjct: 448 KVFVHRVGRTARAGQRGWAYALVRESDLPYL 478


>gi|65306809|gb|AAY41942.1| vasa-like protein [Anopheles gambiae]
          Length = 596

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 136/358 (37%), Positives = 201/358 (56%), Gaps = 11/358 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F   GL  +V+  V  + Y KPTPIQ   IP++L   D+   AQTG+GKTA+F+LPM+  
Sbjct: 176 FERSGLREEVMTNVRKSSYTKPTPIQRYAIPIILNGRDLMACAQTGSGKTAAFMLPMIHH 235

Query: 62  ILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L+K  +   R R P  +I+ PTRELA Q+ D   K+     L V +  GG   + Q + 
Sbjct: 236 LLDKEDSLELRTRNPYIVIVAPTRELAIQIHDEGRKFAHGTKLKVCVSYGGTAVQHQLQL 295

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-- 176
           +  G  VL+ TPGR+LD  +RG +   N+  +V+DEADRMLDMGF+P I+ +        
Sbjct: 296 MRGGCHVLVATPGRLLDFIDRGYVTFENVNFVVLDEADRMLDMGFLPSIEKVMGHATMPE 355

Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTL+FSAT   E+Q+++  FL N   + V         +E        +  KK   
Sbjct: 356 KQQRQTLMFSATFPAEIQELAGKFLHNYICVFVGIVGGACADVEQTI--HLVEKFKKRKK 413

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L+++L   +  K  ++F   K+N   L   + +  F   +IHG+  QR R   L +FK G
Sbjct: 414 LEEILNGGNP-KGTLVFVETKRNADYLASLMSETQFPTTSIHGDRLQREREMALYDFKSG 472

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            + +++A+ +AARGLDI +V HV N+D+P   ++Y+HRIGRTGR G  G+A +    E
Sbjct: 473 RMDVLIATSVAARGLDIKNVNHVVNYDLPKSIDDYVHRIGRTGRVGNKGRATSFYDPE 530


>gi|308081024|ref|NP_001183303.1| hypothetical protein LOC100501699 [Zea mays]
 gi|238010618|gb|ACR36344.1| unknown [Zea mays]
          Length = 643

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 141/395 (35%), Positives = 213/395 (53%), Gaps = 28/395 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++ L   +   +    YVKPTP+Q   IP+ +   D+   AQTG+GKTA+F  P+++ 
Sbjct: 177 FAEIDLGDALNENIRRCKYVKPTPLQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISG 236

Query: 63  LEKG--------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           + K           R   P  LIL PTREL+ Q+ +   K+     + V +  GG P   
Sbjct: 237 ILKSPKPHQRSRSTRTACPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGGAPITN 296

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++LERG ++L+ TPGR++D   R ++ +  I+ L +DEADRMLDMGF P I+ I   +
Sbjct: 297 QLRELERGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEGM 356

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQT+LFSAT   E+Q+++ +FL +   + V    S+ + I       +   S 
Sbjct: 357 DMPQRGERQTMLFSATFPKEIQRMAADFLADYIFLAVGRVGSSTDLIVQRV--EFVLDSD 414

Query: 231 KCALLQQLLQSQDTMKNG--------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
           K + L  L+ +Q    NG        ++F   K+    L   L + GF   +IHG+  Q+
Sbjct: 415 KRSYLMDLIHAQKA--NGTHGKHALTLVFVETKRGADALEDWLFRNGFPATSIHGDRTQQ 472

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R   L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ 
Sbjct: 473 EREHALRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKS 532

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKK----VDWLNG 373
           G A     + +      +  L+++       WL+G
Sbjct: 533 GLATAFFNESNTTLARPLSDLMKEANQEVPKWLDG 567


>gi|254974450|ref|ZP_05270922.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-66c26]
 gi|255091842|ref|ZP_05321320.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP
           107932]
 gi|255099944|ref|ZP_05328921.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-63q42]
 gi|255305833|ref|ZP_05350005.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC
           43255]
 gi|255313577|ref|ZP_05355160.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-76w55]
 gi|255516261|ref|ZP_05383937.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-97b34]
 gi|255649358|ref|ZP_05396260.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-37x79]
 gi|260682530|ref|YP_003213815.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260686129|ref|YP_003217262.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
 gi|260208693|emb|CBA61492.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260212145|emb|CBE02789.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
          Length = 375

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 213/368 (57%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  LG+S   +  +  +G   PTPIQ ++I L+ +  DV   AQTGTGKT +F+LP  
Sbjct: 7   MDFKSLGISENTINILKKSGITTPTPIQKESIKLIKEGKDVIAEAQTGTGKTLAFLLP-- 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I E     +   + LIL PTRELA Q+ +   K  ++ ++++    GG    +Q KKL+
Sbjct: 65  -IFENISLDINDIQVLILSPTRELAIQITEEAMKLKESKDVSILAAYGGKDIGSQIKKLK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH NR  + ++ ++  V+DEAD+ML MGF   ++ I       +QT
Sbjct: 124 GNIHMIIATPGRLLDHLNRKTIDLSKLKTFVLDEADQMLLMGFKNEVEAILKETSNKKQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+  +++K++  + +NP  + +     T   I+   V T  +  KK   L ++L 
Sbjct: 184 LCFSATINSQVKKLAYRYTKNPVVVSIQKEEITLNNIKQEVVETTDR--KKLDALCKVL- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIFC  K+ V NL  +L  +G++   +H +I Q  R +I+ +F+   IQ ++
Sbjct: 241 DEDNPFMAIIFCRTKRRVDNLEEALAIRGYNCQKLHSDIAQSKRERIMKSFRNLDIQYLI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI  V H++N+D+P   E+YIHRIGRTGRAG  G     +  ++ + +  I
Sbjct: 301 ATDVASRGLDISGVSHIYNYDLPETPEDYIHRIGRTGRAGEEGYTCAFIDPKNERMLSEI 360

Query: 361 EKLIEKKV 368
           E  IE K+
Sbjct: 361 ETAIESKI 368


>gi|329897169|ref|ZP_08271909.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium IMCC3088]
 gi|328921324|gb|EGG28718.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium IMCC3088]
          Length = 397

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 136/375 (36%), Positives = 219/375 (58%), Gaps = 12/375 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L  +++  + D G+V  +PIQ   +P  L+  D  G AQTGTGKTA+F++ +   
Sbjct: 17  FESLDLDERLLKGIKDLGFVTCSPIQGAILPHTLRGLDAIGKAQTGTGKTAAFLITVFND 76

Query: 63  LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L          V  PR L++ PTREL  Q+A++ +  GK   L V  LIGG+ ++ Q +K
Sbjct: 77  LLAHPIDDERFVGEPRALVIAPTRELVMQIAEDAKDLGKYTGLRVVTLIGGMDYQKQLQK 136

Query: 119 LERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L++   D+++ TPGR++D   R  L ++ +E +V+DEADRMLDMGFIP ++ I    P  
Sbjct: 137 LDQEPVDLVVATPGRLIDFMTRQDLFLDRVETIVLDEADRMLDMGFIPQVKRIVRATPPK 196

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCAL 234
             RQTLLFSAT T ++  +SE +   P +IE+   S +TA   +  ++ +  Q  K   +
Sbjct: 197 EHRQTLLFSATFTQDIINLSEQWTYKPIKIEIEPESVATANVDQKVYLVSAEQRYK---I 253

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  LL+ +    + I+F N++  V +L   L K       + G I Q  R + L +FK G
Sbjct: 254 LLNLLRDE-AATSVIVFANRRDQVRHLYERLRKASIPCGVLSGEIPQNKRTRTLEDFKRG 312

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            ++++VA+D+A RG+ +  V HV N+++P   ++Y+HRIGRTGRAG  G + +  +++D 
Sbjct: 313 KLKVLVATDVAGRGIHVDGVSHVVNYNLPEDPDDYVHRIGRTGRAGATGTSISFASEDDA 372

Query: 355 KHIDAIEKLIEKKVD 369
             +  IE L+ ++++
Sbjct: 373 FLLPDIEALLGERLE 387


>gi|325273395|ref|ZP_08139652.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
 gi|324101468|gb|EGB99057.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
          Length = 426

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 136/372 (36%), Positives = 215/372 (57%), Gaps = 11/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F+   L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 15  FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 74

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L+ GR  +R   +LIL PTRELA Q     + + +   +   L+ GG  F+ Q   L
Sbjct: 75  LVDLKGGRVEIR---SLILLPTRELAQQTLKQVQLFSQFTYIKAGLVTGGEDFKEQAAML 131

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  DVLI TPGR+L+  N G L ++++++L++DEADRMLDMGF   ++ +        Q
Sbjct: 132 RKVPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQ 191

Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAE-TIEHCFVATYAQYSKKCALLQQ 237
           TLLFSAT     L+ +    L++P+ + +N+ S  AE T +    A + Q+ ++     Q
Sbjct: 192 TLLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIV---Q 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L + +T    I+F N +     +   L  +      +HG  DQ+ R   +  FK+G+ +
Sbjct: 249 WLLANETFDKAIVFTNTRALADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSK 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  +  V NFD+P   + Y+HR+GRTGRAG  G A +L+   D   +
Sbjct: 309 VLVATDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLM 368

Query: 358 DAIEKLIEKKVD 369
            +IE+ ++++ +
Sbjct: 369 SSIERYLKQQFE 380


>gi|296808427|ref|XP_002844552.1| ATP-dependent RNA helicase drs1 [Arthroderma otae CBS 113480]
 gi|238844035|gb|EEQ33697.1| ATP-dependent RNA helicase drs1 [Arthroderma otae CBS 113480]
          Length = 807

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 138/357 (38%), Positives = 203/357 (56%), Gaps = 3/357 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKTA+F++P+L  
Sbjct: 295 FQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTAAFIVPILER 354

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++ 
Sbjct: 355 LLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKR 414

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EIL++DEADRML+ GF   +  I + +P +RQT+
Sbjct: 415 PDVIIATPGRFIDHMRNSASFTVDTLEILILDEADRMLEDGFAEELNEILTTIPKSRQTM 474

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMT  + K+    L  P R+ V++   T  T+   FV     +  K+ A L  L +
Sbjct: 475 LFSATMTSSVDKLIRVGLNKPIRLMVDSKKQTVGTLVQEFVRLRPGREDKRLAYLMFLCK 534

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  T +  I+F  QKK    +       G     +HG++ Q  R+K + +F++G +  ++
Sbjct: 535 TVYTSRV-IVFFRQKKEAHRVRIVFGLMGLKAAELHGSMSQEQRIKSVEDFRDGKVSYLL 593

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K +
Sbjct: 594 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVV 650


>gi|205277319|ref|NP_001034520.2| vasa RNA helicase [Tribolium castaneum]
 gi|270011102|gb|EFA07550.1| vasa [Tribolium castaneum]
          Length = 627

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 140/367 (38%), Positives = 211/367 (57%), Gaps = 17/367 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL P ++  V  +GY KPT IQ   IP++L   D+   AQTG+GKTA+F+LP++  
Sbjct: 208 FETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPIIHN 267

Query: 63  LEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           L   +           P  +I+ PTRELA Q+AD  +K+  N  + VA++ GG     Q 
Sbjct: 268 LLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTNHQR 327

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS--LV 174
            ++  G  +L+ TPGR+ D  NRG +  N+++  V+DEADRMLDMGF+  ++ + S   +
Sbjct: 328 GRILGGCHILVATPGRLKDFVNRGNVSFNSLKYFVLDEADRMLDMGFLGDVEEMLSHQSM 387

Query: 175 PFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSK 230
           P T  RQTL+FSAT  +E+Q+++  FL N   I V    S    +E  F  V+ + + SK
Sbjct: 388 PATGERQTLMFSATFPEEVQQLAGKFLLNYIFIAVGIVGSACTDVEQKFFQVSKFDKRSK 447

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             ++L++    +      +IF   K+N   L   L +Q     +IHG+  Q  R K L +
Sbjct: 448 LVSILEKAPNERT-----LIFVETKRNADFLATFLSEQNIQSTSIHGDRYQSEREKALLD 502

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G  +++VA+ +AARGLDI DV HV N+D+P   + Y+HRIGRTGR G  GKA +   
Sbjct: 503 FKTGHRKVLVATGVAARGLDIKDVQHVINYDLPKSIDEYVHRIGRTGRVGNKGKATSFFD 562

Query: 351 KEDIKHI 357
           ++  +++
Sbjct: 563 EDQDRNL 569


>gi|157156397|ref|YP_001462652.1| ATP-dependent RNA helicase DbpA [Escherichia coli E24377A]
 gi|193062707|ref|ZP_03043801.1| ATP-independent RNA helicase DbpA [Escherichia coli E22]
 gi|194426050|ref|ZP_03058606.1| ATP-independent RNA helicase DbpA [Escherichia coli B171]
 gi|260843691|ref|YP_003221469.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O103:H2 str. 12009]
 gi|260855042|ref|YP_003228933.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O26:H11 str. 11368]
 gi|260867791|ref|YP_003234193.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O111:H- str. 11128]
 gi|300822487|ref|ZP_07102626.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300904996|ref|ZP_07122814.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|301305840|ref|ZP_07211925.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|331667742|ref|ZP_08368606.1| ATP-independent RNA helicase DbpA [Escherichia coli TA271]
 gi|331677132|ref|ZP_08377828.1| ATP-independent RNA helicase DbpA [Escherichia coli H591]
 gi|157078427|gb|ABV18135.1| ATP-independent RNA helicase DbpA [Escherichia coli E24377A]
 gi|192931829|gb|EDV84429.1| ATP-independent RNA helicase DbpA [Escherichia coli E22]
 gi|194416105|gb|EDX32371.1| ATP-independent RNA helicase DbpA [Escherichia coli B171]
 gi|257753691|dbj|BAI25193.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O26:H11 str. 11368]
 gi|257758838|dbj|BAI30335.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O103:H2 str. 12009]
 gi|257764147|dbj|BAI35642.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O111:H- str. 11128]
 gi|300403145|gb|EFJ86683.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|300524903|gb|EFK45972.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300838930|gb|EFK66690.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|315254386|gb|EFU34354.1| DEAD/DEAH box helicase [Escherichia coli MS 85-1]
 gi|323153565|gb|EFZ39816.1| ATP-independent RNA helicase dbpA [Escherichia coli EPECa14]
 gi|323162444|gb|EFZ48296.1| ATP-independent RNA helicase dbpA [Escherichia coli E128010]
 gi|323179693|gb|EFZ65254.1| ATP-independent RNA helicase dbpA [Escherichia coli 1180]
 gi|324117462|gb|EGC11368.1| DEAD/DEAH box helicase [Escherichia coli E1167]
 gi|331065327|gb|EGI37222.1| ATP-independent RNA helicase DbpA [Escherichia coli TA271]
 gi|331075821|gb|EGI47119.1| ATP-independent RNA helicase DbpA [Escherichia coli H591]
          Length = 457

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 218/377 (57%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W     +S   PLE
Sbjct: 363 KLNWQTPPANSSIVPLE 379


>gi|152971432|ref|YP_001336541.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238896027|ref|YP_002920763.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae NTUH-K2044]
 gi|262040311|ref|ZP_06013562.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|150956281|gb|ABR78311.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238548345|dbj|BAH64696.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259042420|gb|EEW43440.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 443

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 134/351 (38%), Positives = 201/351 (57%), Gaps = 4/351 (1%)

Query: 18  DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTL 76
           D G+ +PT IQ   IP  L   D+ G A TGTGKTA+++LP L  +L+  R +   PR L
Sbjct: 21  DKGFTRPTAIQAAAIPPALDGRDILGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRIL 80

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           IL PTRELA QVAD+  +  K+ +L +A + GG+ +    +      D+++ T GR+L +
Sbjct: 81  ILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQY 140

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQKVS 195
                     +E L++DEADRMLDMGF   I+ I     + +QT+LFSAT+  D ++  +
Sbjct: 141 IKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQTMLFSATLEGDAIKDFA 200

Query: 196 ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
           E  L+ P  +  N PS+      H +         K  LL  LLQ  +  +  I+F  ++
Sbjct: 201 ERLLEEPVEVSAN-PSTRERKKIHQWYYRADDIEHKTKLLVNLLQQPEATR-AIVFVRKR 258

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           + V  L + L + G + C + G + Q  R + +    +G + +++A+D+AARG+DIPDV 
Sbjct: 259 ERVHELANWLREAGINTCWLEGEMVQAKRNEAIKRLTDGRVNVLIATDVAARGIDIPDVS 318

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           HVFNFD+P  A+ Y+HRIGRTGRAG+ G A +LV   D   +  I + IE+
Sbjct: 319 HVFNFDMPRTADTYLHRIGRTGRAGKKGTAISLVEAHDHLLLGKIGRYIEE 369


>gi|113866090|ref|YP_724579.1| ATP-dependent RNA helicase DbpA [Ralstonia eutropha H16]
 gi|113524866|emb|CAJ91211.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
          Length = 469

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 139/369 (37%), Positives = 209/369 (56%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L LSP ++  +   GY + TPIQ  ++P+ L   D+   A+TG+GKTA+F L +L  
Sbjct: 14  FSNLPLSPTMLATLAQLGYDEMTPIQAASLPITLAGQDLVAQAKTGSGKTAAFGLALLHR 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    ++L PTRELA QV     +  +   N+ V  L GG P   Q   L  
Sbjct: 74  LDPRRFDVQ---AMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGSPMRPQVDSLIH 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRILDH +RG L ++ I  LV+DEADRMLDMGF   I  + S  P  RQTL
Sbjct: 131 GAHIVVGTPGRILDHIDRGSLDLSGINTLVLDEADRMLDMGFFDDIAYVASRCPKDRQTL 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    + K+S  FL+NP+ +++        TI   F     +  ++   + +LL  
Sbjct: 191 LFSATYPPGIDKLSHRFLRNPQSVKLEATHDNT-TIRQRFYEV--EEGERLNTVGRLLDH 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   + FCN K     L   L  QG+   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 248 FRPVST-LAFCNTKARCRELVELLRAQGYQALALHGELEQRERDQVLVQFANRSCSVLVA 306

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++    E ++HRIGRTGRA + G AF+LV+ +++  +  +E
Sbjct: 307 TDVAARGLDIAQLEAVINVEITPDPEVHVHRIGRTGRADQEGWAFSLVSMDEMGRVGNLE 366

Query: 362 KLIEKKVDW 370
           +    + +W
Sbjct: 367 QHHGGEFEW 375


>gi|318079420|ref|ZP_07986752.1| putative ATP-dependent RNA helicase [Streptomyces sp. SA3_actF]
          Length = 461

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 128/340 (37%), Positives = 203/340 (59%), Gaps = 22/340 (6%)

Query: 41  VCGIAQTGTGKTASFVLPML---TI---LEKGRAR----VRMPRTLILEPTRELAAQVAD 90
           + G A+TGTGKT  F LP+L   T+   +E GRA        P+ L++ PTREL  QV +
Sbjct: 1   MIGQAKTGTGKTLGFGLPLLERVTVSADVEAGRATPDKLSEAPQALVVVPTRELCTQVTN 60

Query: 91  NFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEIL 150
           + +  GK  ++ V  + GG  +E Q + L++G DV++ TPGR+LD   + KL ++ +  L
Sbjct: 61  DLQTAGKVRDVRVLAIYGGRAYEPQVEALKKGVDVVVGTPGRLLDLAGQRKLDLSKVRAL 120

Query: 151 VIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           V+DEAD MLD+GF+P ++ I +++P  RQT+LFSATM   +  ++  ++  P  I   +P
Sbjct: 121 VLDEADEMLDLGFLPDVEKIVAMLPVKRQTMLFSATMPGAVVALARRYMSQPTHINATSP 180

Query: 211 ----SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI--IFCNQKKNVVNLCHS 264
               ++ A T +H F    A    K  ++ ++LQ++     G+  IFC  K+   ++   
Sbjct: 181 DDENATVANTEQHVF---RAHSMDKPEMVARILQAE---GRGLVMIFCRTKRTAADISEQ 234

Query: 265 LEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPN 324
           L+++GF+  A+HG++ Q +R + L  F+ G + ++V +D+AARG+D+  V HV N+  P 
Sbjct: 235 LQRRGFAAGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQTPE 294

Query: 325 RAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
             + Y+HRIGRTGRAGR G A TLV  +DI     I K +
Sbjct: 295 DEKTYLHRIGRTGRAGRSGTAVTLVDWDDIPRWQLINKAL 334


>gi|302758194|ref|XP_002962520.1| hypothetical protein SELMODRAFT_438217 [Selaginella moellendorffii]
 gi|300169381|gb|EFJ35983.1| hypothetical protein SELMODRAFT_438217 [Selaginella moellendorffii]
          Length = 821

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 130/371 (35%), Positives = 223/371 (60%), Gaps = 11/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLSP +  A+   GY  PTPIQ KT+PL+L  +DV  +A+TG+GKTA+F++PML  
Sbjct: 55  FESLGLSPSIYQAIRKKGYSVPTPIQRKTLPLILAGNDVVAMARTGSGKTAAFLIPML-- 112

Query: 63  LEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            EK RA    P  R LIL PTRELA Q     ++ G+N +L + +L+GG   E Q ++L 
Sbjct: 113 -EKLRAHSPKPGARALILSPTRELALQTFKFCKELGRNTDLRITVLVGGDSMETQFEQLS 171

Query: 121 RGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  D+LI TPGR++ H +  + + + ++E +V DEADR+ +MGF   ++ I + +   RQ
Sbjct: 172 KNPDILIATPGRLMHHLSEVEGMSLKSVEYVVFDEADRLFEMGFAEQLRQILTQLHELRQ 231

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA--LLQQ 237
           TLLFSAT+   L   ++  L++P  + ++T +  +  ++  F     +    C   LL++
Sbjct: 232 TLLFSATLPRLLADFAKAGLKDPLTVRLDTETKISPDLKLAFFTMRKEEKLACLVHLLRE 291

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++ S+   +  ++F + K +V  L   L+ +G  +  ++G +DQ +R   ++ F+     
Sbjct: 292 VVSSE---QQTVVFVSTKHHVEFLFEVLKSEGIDLAVVYGAMDQTARKINVAKFRARKTM 348

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ +D+AARG+DIP + +V NFD P + + ++HR+GR  RAGR G A++ +  +++ ++
Sbjct: 349 ILLVTDVAARGIDIPLLDNVVNFDFPAKPKLFVHRVGRAARAGRTGTAYSFLTSDELPYL 408

Query: 358 DAIEKLIEKKV 368
             +   + K V
Sbjct: 409 LDLHLFLSKPV 419


>gi|194904159|ref|XP_001981012.1| GG23261 [Drosophila erecta]
 gi|190652715|gb|EDV49970.1| GG23261 [Drosophila erecta]
          Length = 709

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 130/352 (36%), Positives = 202/352 (57%), Gaps = 14/352 (3%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE----- 64
           P ++  +   G+ KP+PIQ +  P++LQ HD+ GIAQTGTGKT +F+LP +   E     
Sbjct: 298 PDLLGEITKMGFPKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTP 357

Query: 65  ---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +G A V     L+L PTRELA Q+    +KY    ++    + GG     Q   LER
Sbjct: 358 RGTRGGANV-----LVLAPTRELALQIEMEVKKYSFR-DMKAVCVYGGGDRRMQISDLER 411

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+++ICTPGR+ D      + ++ I  LV+DEADRMLDMGF P I+ +   +   RQT+
Sbjct: 412 GAEIIICTPGRLNDLVQANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTI 471

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT    ++++++++++NP ++ V +    A       +       +K   ++  +++
Sbjct: 472 MTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIQLLEDDKEKFNTIKSFVRN 531

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFC +K    +L   L   GF    IHGN DQ  R + +++ K G + ++VA
Sbjct: 532 MSNTDKIIIFCGRKARADDLSSELTLDGFMTQCIHGNRDQIDREQAIADIKSGAVHILVA 591

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +D+A+RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + + + +ED
Sbjct: 592 TDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGRAGRKGTSISFITRED 643


>gi|118785473|ref|XP_314684.3| AGAP008578-PA [Anopheles gambiae str. PEST]
 gi|116127754|gb|EAA10198.3| AGAP008578-PA [Anopheles gambiae str. PEST]
          Length = 596

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 136/358 (37%), Positives = 201/358 (56%), Gaps = 11/358 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F   GL  +V+  V  + Y KPTPIQ   IP++L   D+   AQTG+GKTA+F+LPM+  
Sbjct: 176 FERSGLREEVMTNVRKSSYTKPTPIQRYAIPIILNGRDLMACAQTGSGKTAAFMLPMIHH 235

Query: 62  ILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L+K  +   R R P  +I+ PTRELA Q+ D   K+     L V +  GG   + Q + 
Sbjct: 236 LLDKEDSLELRTRNPYIVIVAPTRELAIQIHDEGRKFAHGTKLKVCVSYGGTAVQHQLQL 295

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-- 176
           +  G  VL+ TPGR+LD  +RG +   N+  +V+DEADRMLDMGF+P I+ +        
Sbjct: 296 MRGGCHVLVATPGRLLDFIDRGYVTFENVNFVVLDEADRMLDMGFLPSIEKVMGHATMPE 355

Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTL+FSAT   E+Q+++  FL N   + V         +E        +  KK   
Sbjct: 356 KQQRQTLMFSATFPAEIQELAGKFLHNYICVFVGIVGGACADVEQTI--HLVEKFKKRKK 413

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L+++L   +  K  ++F   K+N   L   + +  F   +IHG+  QR R   L +FK G
Sbjct: 414 LEEILNGGNP-KGTLVFVETKRNADYLASLMSETQFPTTSIHGDRLQREREMALYDFKSG 472

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            + +++A+ +AARGLDI +V HV N+D+P   ++Y+HRIGRTGR G  G+A +    E
Sbjct: 473 RMDVLIATSVAARGLDIKNVNHVVNYDLPKSIDDYVHRIGRTGRVGNKGRATSFYDPE 530


>gi|300172973|ref|YP_003772139.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
           [Leuconostoc gasicomitatum LMG 18811]
 gi|299887352|emb|CBL91320.1| ATP-dependent RNA helicase/Autoaggregation-mediating protein
           [Leuconostoc gasicomitatum LMG 18811]
          Length = 454

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 132/364 (36%), Positives = 216/364 (59%), Gaps = 9/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L P+++ A+   G+ +PTP+Q K IP +LQ +DV G +QTG+GKT +F++P+L  
Sbjct: 8   FGQFNLKPEIIVALTKIGFTQPTPVQAKLIPSILQGNDVVGQSQTGSGKTHTFLIPILNQ 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKKLE 120
           L +    V+    +I  P+RELAAQ+    + + +++  N+T++  +GG     Q K+LE
Sbjct: 68  LSQNEQYVQ---AVITTPSRELAAQITKAAKDFAESWQQNVTISEFVGGTDKMRQIKQLE 124

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G   ++I TPGRI D  + G L ++ +  LV+DEAD  LDMGF+  +  I   +P   Q
Sbjct: 125 KGQPQIVIGTPGRIKDLVSTGALKLHAVHTLVVDEADMTLDMGFLSEVDFIAGAMPDKLQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSATM ++L+   + +L NPK   +   +  A+TI++  +AT ++   +  ++ Q+L
Sbjct: 185 TLVFSATMPEKLKPFLKKYLDNPKFEAIPVSTVIADTIDNWLLATKSK--NRNDVIYQVL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S       ++F N K+    +  +L  +G  V  IHG+I+ R R +++   +    Q +
Sbjct: 243 -SIGNPYLALVFANTKERAKEIASNLRGRGLKVAEIHGDIEPRERRRVMKAIQNLEFQYV 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+DI  V HV N D+P+  E ++HR+GRTGR G  G A TL   ++ + +  
Sbjct: 302 VATDLAARGIDIEGVSHVINDDIPDELEFFVHRVGRTGRNGLAGLAITLYGPDEEQEVAE 361

Query: 360 IEKL 363
           +E L
Sbjct: 362 LEAL 365


>gi|328786029|ref|XP_001122722.2| PREDICTED: probable ATP-dependent RNA helicase DDX46-like [Apis
           mellifera]
          Length = 1030

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 210/363 (57%), Gaps = 7/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G++ K +  +   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 370 WAQCGVTKKELEVLKKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFRH 429

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL++   A    P  LI+ PTREL  Q+  + +K+ K+  L+   + GG     Q  +L+
Sbjct: 430 ILDQPPLADGDGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHVCVYGGTGISEQIAELK 489

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   V   
Sbjct: 490 RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIMENVRPD 549

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT   +++ ++   L  P  ++V   S   + +E   V    +  K   LL+ 
Sbjct: 550 RQTVLFSATFPRQMEALARRILTRPVEVQVGGRSIVCKDVEQ-HVVVLEEDQKFYKLLEI 608

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   QD   + IIF ++++N   L   L K  +S  ++HG IDQ  R   + +FK G  +
Sbjct: 609 LGHYQDK-GSAIIFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTILDFKAGRTK 667

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  E  ++ 
Sbjct: 668 LLVATSVAARGLDVKHLILVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITSEQERYA 727

Query: 358 DAI 360
             I
Sbjct: 728 GDI 730


>gi|58429986|gb|AAW78361.1| vasa RNA helicase [Tribolium castaneum]
          Length = 580

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 139/356 (39%), Positives = 206/356 (57%), Gaps = 13/356 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL P ++  V  +GY KPT IQ   IP++L   D+   AQTG+GKTA+F+LP++  
Sbjct: 160 FETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPIIHN 219

Query: 63  LEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           L   +           P  +I+ PTRELA Q+AD  +K+  N  + VA++ GG     Q 
Sbjct: 220 LLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTNHQR 279

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS--LV 174
            ++  G  +L+ TPGR+ D  NRG +  N+++  V+DEADRMLDMGF+  ++ + S   +
Sbjct: 280 GRILGGCHILVATPGRLKDFVNRGNVSFNSLKYFVLDEADRMLDMGFLGDVEEMLSHQSM 339

Query: 175 PFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           P T  RQTL+FSAT  +E+Q+++  FL N   I V    S    +E  F    +++ K+ 
Sbjct: 340 PATGERQTLMFSATFPEEVQQLAGKFLLNYIFIAVGIVGSACTDVEQKFFQV-SKFDKRS 398

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L+  L ++ +  +  +IF   K+N   L   L +Q     +IHG+  Q  R K L +FK
Sbjct: 399 KLVSILEKAPN--ERTLIFVETKRNADFLATFLSEQNIQSTSIHGDRYQSEREKALLDFK 456

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            G  +++VA+ +AARGLDI DV HV N+D+P   + Y+HRIGRTGR G  GKA + 
Sbjct: 457 TGHRKVLVATGVAARGLDIKDVQHVINYDLPKSIDEYVHRIGRTGRVGNKGKATSF 512


>gi|224096618|ref|XP_002310673.1| predicted protein [Populus trichocarpa]
 gi|222853576|gb|EEE91123.1| predicted protein [Populus trichocarpa]
          Length = 462

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 134/368 (36%), Positives = 216/368 (58%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DLG+  ++V A    G+  PT IQ++ +P  L+  D+ G+AQTG+GKT +F LP+L  
Sbjct: 28  FKDLGICDQLVEACDSLGWKNPTKIQVEAVPHALEGKDLIGLAQTGSGKTGAFALPILQA 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LE  +  V+     +L PTRELA Q+A+ FE  G    L   +L+GG+    Q   L +
Sbjct: 88  LLESSQKSVQPFFACVLSPTRELAIQIAEQFEALGSGIGLRCGVLVGGVDIVQQTLILAK 147

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+LDH +  K   +  ++ LV+DEADR+L+  F   +  I +++P  R+T
Sbjct: 148 RPHIVVATPGRLLDHLSNTKGFSLRTLKYLVLDEADRLLNEEFEKSLDEILNVIPRDRKT 207

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT +++K+    L+NP +IE  +  ST +T++  +    +++ K C L+  L +
Sbjct: 208 YLFSATMTKKVKKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVPSKH-KDCYLVYILTE 266

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             ++    ++F         L   L   G     I+G++ Q  R+  L+ FK     +++
Sbjct: 267 MSNS--TAMVFTRTCDATSFLALVLRNLGLRAIPINGHMSQPKRLGALNKFKARECNVLI 324

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A+RGLDIP V  V N+DVP+ +++YIHR+GRT RAGR G A +LV + +++    I
Sbjct: 325 CTDVASRGLDIPSVDMVINYDVPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYLQI 384

Query: 361 EKLIEKKV 368
           E LI KK+
Sbjct: 385 ENLIGKKL 392


>gi|149370417|ref|ZP_01890106.1| possible ATP-dependent RNA helicase [unidentified eubacterium
           SCB49]
 gi|149355968|gb|EDM44525.1| possible ATP-dependent RNA helicase [unidentified eubacterium
           SCB49]
          Length = 450

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 133/366 (36%), Positives = 210/366 (57%), Gaps = 4/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++L L  ++   + D G   PTPIQ ++  ++    D+ GIAQTGTGKT +++LP+L
Sbjct: 2   ITFSELKLGKQLQYGIDDLGITHPTPIQEQSFSVIKAGKDMVGIAQTGTGKTFAYMLPVL 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  R     PR L+L PTREL  QV +  EK GK  ++ V  + GG+      + + 
Sbjct: 62  ETLKYSREI--NPRVLVLVPTRELVVQVVEEIEKLGKYLSVRVTGVYGGVNINTHKQAVA 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DV++ TPGR+ D      + + NI+ L+IDE D MLD+GF   I NI  L+P  RQ 
Sbjct: 120 QGCDVVVATPGRLYDLALSRAVSLKNIKKLIIDEVDVMLDLGFRFQITNIFELLPERRQN 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTD+++ + ++F ++P++I V    +  + IE         Y+ K  LL  LL+
Sbjct: 180 ILFSATMTDDVENLIDDFFKSPEKISVAVSGTPLDNIEQQSYVVKNFYT-KANLLNHLLK 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEK-QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++     ++F   K+    L   ++      V  IH N  Q  R++ + NF  G  +++
Sbjct: 239 DKEAFTKVLVFVPNKRQADTLYQVVDDFYPDQVSVIHSNKTQNYRLRSIENFNAGKKRIL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ +RGLD+  + HV N DVP  AENY+HRIGRTGRA   GK+     +++    +A
Sbjct: 299 ISTDVMSRGLDLDRITHVVNMDVPRYAENYMHRIGRTGRAEAQGKSILFSTEKEALLKEA 358

Query: 360 IEKLIE 365
           IE L++
Sbjct: 359 IETLMD 364


>gi|91787583|ref|YP_548535.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
 gi|91696808|gb|ABE43637.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
          Length = 624

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 142/418 (33%), Positives = 226/418 (54%), Gaps = 55/418 (13%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGI------------AQTGTG 50
           F  LGL+ +++ AV D G+ +PT +Q+ TIP  +Q  D  G             +QTG+G
Sbjct: 49  FVKLGLAKELLQAVADMGFTQPTAVQLATIPKAMQGLDADGADPKAKFTDLLVSSQTGSG 108

Query: 51  KTASFVLPMLTIL-----------------------EKGRA----------------RVR 71
           KTA+F+LP+L  L                        KG A                +  
Sbjct: 109 KTAAFLLPVLHTLLMQQEEAERQERAEFERLSAEAIAKGEAPPKKPKRKDPTNARNFKAA 168

Query: 72  MPRTLILEPTRELAAQV-ADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130
            P  LIL PTRELA QV AD  +       L +A ++GGIP++ Q  KL+  A++++ TP
Sbjct: 169 TPGALILCPTRELAQQVCADAIDLVRHCRGLRIANVVGGIPYQLQIAKLQ-NANLVVATP 227

Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190
           GR+LD     ++ ++ ++ LV+DEADRMLD+GF   +  +  L    +QT++FSAT    
Sbjct: 228 GRLLDLQRSMQIKLDQVQFLVVDEADRMLDLGFADDLTEVNQLTIERKQTMMFSATFAPR 287

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGII 250
           + +++   ++ P+R+E+++P     +I    +       K+  L   L  +  TM   I+
Sbjct: 288 IMQLATRVMRTPQRVEIDSPHEKHTSITQSLLWADNMTHKRKLLDHHLRDT--TMNQSIV 345

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F   +     L + L ++GFS  A+HG + Q  R + L  F++G +Q++VA+D+AARGLD
Sbjct: 346 FACTQVECDGLANDLVQEGFSAVALHGALGQGLRNRRLMAFRDGRVQVLVATDVAARGLD 405

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           +P + HV N+ +P +AE+Y+HRIGRTGRAGR G+A T+    D + I  IE  +++ +
Sbjct: 406 VPTITHVINYGLPMKAEDYVHRIGRTGRAGREGQAITIAEFRDRRKIQDIEHYMQQNL 463


>gi|70994152|ref|XP_751923.1| DEAD/DEAH box helicase [Aspergillus fumigatus Af293]
 gi|74671396|sp|Q4WPE9|PRP28_ASPFU RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|66849557|gb|EAL89885.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus Af293]
 gi|159125162|gb|EDP50279.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus A1163]
          Length = 796

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 139/431 (32%), Positives = 227/431 (52%), Gaps = 34/431 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + GL  +++  V   GY +PTPIQ   IP+ LQ  D+ G+A TG+GKTASF+LP+L  
Sbjct: 366 WEESGLPKRLLELVDQVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVY 425

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +       E    +   P  ++L PTRELA Q+     K+ +     V  ++GG  FE Q
Sbjct: 426 ISELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQ 485

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +P
Sbjct: 486 AYSLRNGAEIIIATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALP 545

Query: 176 FT--------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
            T                    RQT++++ATM   +++++  +L+ P  + + +     +
Sbjct: 546 VTNEKPDTEEAENSAAMRSHRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGSAGEAVD 605

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
           T+E   V   A   K+   L  +L S +     I+F N K+N   +   +++ GFS   +
Sbjct: 606 TVEQR-VEMIAGEDKRKKRLADILSSGEFRPPIIVFVNIKRNCDAIAREIKQMGFSSVTL 664

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++ N  E+Y HRIGR
Sbjct: 665 HGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIGR 724

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           TGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ    R 
Sbjct: 725 TGRAGKSGVAITFLGNEDADVMYDLKQML------MKSPISRVPEELRKHEAAQSKPNRG 778

Query: 396 NNPIPQKSTGF 406
                  S+GF
Sbjct: 779 LAKKSDDSSGF 789


>gi|119775538|ref|YP_928278.1| DEAD-box ATP dependent DNA helicase [Shewanella amazonensis SB2B]
 gi|119768038|gb|ABM00609.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis
           SB2B]
          Length = 407

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 144/407 (35%), Positives = 225/407 (55%), Gaps = 16/407 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA   L   +   +   G+V+PT +Q   IP++L   D+   A TGTGKTA+F+LP+L
Sbjct: 1   MSFAAFTLPSPLANNLAKLGFVEPTEVQAGAIPMMLAGDDLMVKAATGTGKTAAFLLPIL 60

Query: 61  TIL---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L   E     +  PR L+L PTREL  QV D  +   K   + +A + GG+P E+Q  
Sbjct: 61  ARLLADEVASRNLPAPRALVLVPTRELCQQVYDAAKALAKGSAVRIAQVYGGVPLESQLN 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            ++ G D+++ TPGR+LDH  +  L ++ +  LV DEADRMLDMGF   I+ +   +  T
Sbjct: 121 AIKGGVDLMVATPGRLLDHLKKRTLRIDTVSQLVFDEADRMLDMGFEDEIRALVKKLAKT 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALL 235
           RQT LFSAT+ D + +++++ + +PK +E+         IE     + +  ++   C LL
Sbjct: 181 RQTALFSATLGDNVWQLAKSLMDSPKLLEIAAAKDAKPLIEEQVYQLDSERKFEFICHLL 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 +++    +IF   K+    L   L + G S  A+H ++ QR R + L++FK   
Sbjct: 241 -----GKNSWSQVLIFSRTKEGADKLTAKLVEAGHSAVAMHADLSQRQREQNLADFKAAD 295

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            +++VA+D+AARGLDI  +  + N ++P + E+Y+HRIGRTGRAG  G A +L+   D  
Sbjct: 296 ARVLVATDVAARGLDIQALPCIINVELPFKKEDYVHRIGRTGRAGSAGLAISLLDVADEP 355

Query: 356 HIDAIEKLIEKKV--DWLNG---DLSSLNP-PLEKIDIAQHNHARKN 396
            + A+E  +++++   W  G   DLS  +  P      AQ   ARK 
Sbjct: 356 LLVALEHYLDRRLPQQWYPGFEPDLSIRHERPHSLSKAAQKQKARKR 402


>gi|241957775|ref|XP_002421607.1| ATP-dependent DEAD-box RNA helicase, ribosome assembly, putative
           [Candida dubliniensis CD36]
 gi|223644951|emb|CAX40951.1| ATP-dependent DEAD-box RNA helicase, ribosome assembly, putative
           [Candida dubliniensis CD36]
          Length = 592

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 145/384 (37%), Positives = 216/384 (56%), Gaps = 14/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  L LS  V+  + +  + KPTPIQ  +IP+ L   D+   AQTG+GKT ++++P++  
Sbjct: 116 FQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIER 175

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
           +L K     ++   +IL PTRELA QV +  +K   + N L + L +GG+    Q ++L+
Sbjct: 176 LLYKPSTSTKV---IILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLK 232

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTR 178
              D++I TPGR++DH  N     + +I++LVIDEADRML+ GF   +  I SL+P   R
Sbjct: 233 TRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQEELTEILSLIPKHKR 292

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM   +Q + +  LQ P RI ++ P   A  +   FV    +   K ALL QL
Sbjct: 293 QTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPKQVASKLLQQFVRIRKRDHLKPALLYQL 352

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+   T    ++F  +K+    L   L   G  V  +HG + Q  R++ + NFK   + +
Sbjct: 353 LKGVST--RVVVFVARKETAHKLRIVLGLLGLKVSELHGALSQEQRLQNVKNFKSLDVPV 410

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED----- 353
           ++ +DLAARGLDIP +  V N+D+P   E Y+HR+GRT RAGR G + T V +       
Sbjct: 411 LICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESSQERAI 470

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSS 377
           +K      K + K VDW   + +S
Sbjct: 471 VKAAIVNGKGVAKTVDWNQAEQTS 494


>gi|195144578|ref|XP_002013273.1| GL23489 [Drosophila persimilis]
 gi|194102216|gb|EDW24259.1| GL23489 [Drosophila persimilis]
          Length = 649

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 141/389 (36%), Positives = 212/389 (54%), Gaps = 12/389 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF ++ L   V   +   GY +PTPIQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 206 DFGEVYLPEYVTKEIRRQGYKEPTPIQAQGWPIAMSGANFVGIAKTGSGKTLGYILPAIV 265

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +  ++   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 266 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 325

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 326 QRGCEIVIATPGRLIDFLSSGGTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 385

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+++++E+FL N  +I + +   +A       V    ++SK+  L   L 
Sbjct: 386 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVEVCDEFSKEEKLKSLLS 445

Query: 240 QSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
              DT +N    IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G  
Sbjct: 446 DIYDTSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 505

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + K 
Sbjct: 506 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 565

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
             A+       VD L      +NP LE +
Sbjct: 566 AKAL-------VDVLREANQEINPALENL 587


>gi|261749520|ref|YP_003257206.1| ATP-dependent RNA helicase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497613|gb|ACX84063.1| ATP-dependent RNA helicase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 542

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 133/364 (36%), Positives = 218/364 (59%), Gaps = 8/364 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLTILEKG 66
           L+ K++ A+ D G   PTPIQ K IP +L+   D+  +AQTGTGKTA+F LP   I++K 
Sbjct: 10  LNDKIIQALEDLGIKTPTPIQKKVIPYLLKSGKDLIALAQTGTGKTAAFGLP---IIQKI 66

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL-LIGGIPFEAQNKKLERGADV 125
               R P+ LIL PTREL  Q+  +  ++ +  +L   + L GG+  E Q   L++   +
Sbjct: 67  NLEFRFPQALILCPTRELCIQITRDLSRFSRYISLIKIIPLYGGVSIENQILSLQKRTHI 126

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           ++ TPGRI+D   R KL +++I+ LV+DEAD ML+MGF   + +I   +P  RQ+LLFSA
Sbjct: 127 IVGTPGRIIDLIERKKLHLSDIKYLVLDEADEMLNMGFKEELDSIIIKLPKKRQSLLFSA 186

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           TM+  +  ++ ++L +P  I     +  ++ + H +     Q +K  AL + +  + D  
Sbjct: 187 TMSKYMNGIAHDYLIDPIEIITGKRNFASDDVRHIYYIVSNQ-NKYLALKRIVDINPDIY 245

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
             GIIFC  +K    +  SL + G++  A++G++ Q  R  +++ F+   +Q +VA+D+A
Sbjct: 246 --GIIFCKTRKETREIAESLIQDGYNADALYGDLSQSQRESVMNRFRNRILQFLVATDIA 303

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARG+D+ DV HV N+++P+ +E Y+HR GRTGRAG  G +  ++   + +++   EK I 
Sbjct: 304 ARGIDVNDVTHVINYNIPDESEIYVHRSGRTGRAGNTGISVCIIHSRETRNLREFEKKIG 363

Query: 366 KKVD 369
           K  +
Sbjct: 364 KSFE 367


>gi|225873935|ref|YP_002755394.1| ATP-dependent RNA helicase [Acidobacterium capsulatum ATCC 51196]
 gi|225793658|gb|ACO33748.1| ATP-dependent RNA helicase [Acidobacterium capsulatum ATCC 51196]
          Length = 430

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 129/371 (34%), Positives = 209/371 (56%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L LS  +   +    +V PTP+Q   IP  ++  DV   AQTGTGKT  F+LP +
Sbjct: 1   MQFSELNLSSHLKNQLAVNQFVTPTPVQEAAIPPAMEGKDVLATAQTGTGKTLGFLLPAM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   + +   P  LIL PTRELA QV   + +         A LIGG     Q + L+
Sbjct: 61  ERLLATKGK--HPAVLILTPTRELALQVEKQYAQLAGKSLPQAATLIGGASENNQIRDLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ D   R  + +  IE+LV+DEADRMLDMGFIP I+ I + +P  RQT
Sbjct: 119 AGARLIVATPGRLEDFLERRLIDLKRIEVLVLDEADRMLDMGFIPAIRRIVAKLPRQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + FSAT+   +  + +  L NP R+   +   T+ ++    +A      +K AL+ +++ 
Sbjct: 179 MCFSATIDPAVAHLLDEILTNPVRLSFGSTQQTSSSVR--LIAYEVDADQKAALVHRVVT 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++     ++F   K+   ++   L++ G SV  +HG+  Q  R + L +F+ G  +++V
Sbjct: 237 AEE--GQSLVFVGTKRRTEHVAKRLDRAGISVAVLHGDRSQSQRNRALEDFQRGRARVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RG+ + ++  V N+D+P   E++IHR GRTGRAG  G A T     + +  +  
Sbjct: 295 ATDVASRGIHVDNIAQVINYDMPKMTEDFIHRAGRTGRAGATGVAATFYTPLERREFNRF 354

Query: 361 EKLIEKKVDWL 371
           EK + +K++ +
Sbjct: 355 EKTLNRKIERV 365


>gi|217973860|ref|YP_002358611.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217498995|gb|ACK47188.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 451

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 208/370 (56%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L  +++ ++   G  +PT IQ + +P+ L   D+   ++TG+GKT +F+LP L
Sbjct: 1   MQFTDFSLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   R+   R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRVISTRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            +    ++ TPGRI DH  +  L +N +E+LV+DEADRMLD+GF P ++ I       R 
Sbjct: 121 AKEPHFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAADHKRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   E+  ++   L+NP  + +    S    I +  F+  +  +  K ALL 
Sbjct: 181 QTLMFSATLDHYEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDH--KEALLA 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL+ + T K  IIF   + +   L   L +QGF+  A+ G++ Q +R +I+  F  G  
Sbjct: 239 RLLKDE-THKQVIIFTATRPDTERLAAKLIEQGFATAALSGDLKQAARNQIMDQFARGQQ 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +
Sbjct: 298 QVLVTTDVASRGLDLLNVSLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDN 357

Query: 357 IDAIEKLIEK 366
              ++  + K
Sbjct: 358 FKKVQVFLRK 367


>gi|306813632|ref|ZP_07447813.1| ATP-dependent RNA helicase DbpA [Escherichia coli NC101]
 gi|222033147|emb|CAP75887.1| ATP-independent RNA helicase dbpA [Escherichia coli LF82]
 gi|305852906|gb|EFM53351.1| ATP-dependent RNA helicase DbpA [Escherichia coli NC101]
 gi|312945979|gb|ADR26806.1| ATP-dependent RNA helicase DbpA [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 457

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 138/377 (36%), Positives = 218/377 (57%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
             +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  VSLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+  ++C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQSVCDALNEVGHSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W     +S   PLE
Sbjct: 363 KLNWQTPPANSSIVPLE 379


>gi|126698411|ref|YP_001087308.1| putative ATP-dependent RNA helicase [Clostridium difficile 630]
 gi|306519448|ref|ZP_07405795.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-32g58]
 gi|115249848|emb|CAJ67665.1| putative ATP-dependent RNA helicase [Clostridium difficile]
          Length = 369

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 213/368 (57%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  LG+S   +  +  +G   PTPIQ ++I L+ +  DV   AQTGTGKT +F+LP  
Sbjct: 1   MDFKSLGISENTINILKKSGITTPTPIQKESIKLIKEGKDVIAEAQTGTGKTLAFLLP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I E     +   + LIL PTRELA Q+ +   K  ++ ++++    GG    +Q KKL+
Sbjct: 59  -IFENISLDINDIQVLILSPTRELAIQITEEAMKLKESKDVSILAAYGGKDIGSQIKKLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH NR  + ++ ++  V+DEAD+ML MGF   ++ I       +QT
Sbjct: 118 GNIHMIIATPGRLLDHLNRKTIDLSKLKTFVLDEADQMLLMGFKNEVEAILKETSNKKQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+  +++K++  + +NP  + +     T   I+   V T  +  KK   L ++L 
Sbjct: 178 LCFSATINSQVKKLAYRYTKNPVVVSIQKEEITLNNIKQEVVETTDR--KKLDALCKVL- 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIFC  K+ V NL  +L  +G++   +H +I Q  R +I+ +F+   IQ ++
Sbjct: 235 DEDNPFMAIIFCRTKRRVDNLEEALAIRGYNCQKLHSDIAQSKRERIMKSFRNLDIQYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI  V H++N+D+P   E+YIHRIGRTGRAG  G     +  ++ + +  I
Sbjct: 295 ATDVASRGLDISGVSHIYNYDLPETPEDYIHRIGRTGRAGEEGYTCAFIDPKNERMLSEI 354

Query: 361 EKLIEKKV 368
           E  IE K+
Sbjct: 355 ETAIESKI 362


>gi|332994630|gb|AEF04685.1| ATP-dependent RNA helicase RhlB [Alteromonas sp. SN2]
          Length = 435

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 139/383 (36%), Positives = 228/383 (59%), Gaps = 10/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F+DL ++ KVV A+  A +   TPIQ  ++P +L+  D+ G AQTGTGKT +F++     
Sbjct: 10  FSDLPINSKVVDALTAANFNNCTPIQALSLPPLLEGLDIAGQAQTGTGKTIAFLVATFHY 69

Query: 62  ILEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +L K      +  + PR +I+ PTRELA Q+ ++ +   ++  L++ L+ GG  +++Q +
Sbjct: 70  LLSKADNDENSNSKGPRAIIMAPTRELAVQIFNDAKLLSEHTGLSLGLIYGGEGYQSQRE 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
            LE G D++I T GRILD++ +    +NNI++ V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 TLEEGVDIIIGTTGRILDYYKQNVFTLNNIQVAVLDEADRMFDLGFIKDIRFLFRRLPPA 189

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R ++LFSAT++  +Q+++   + NP  ++V    +TA  +       Y     K  LL
Sbjct: 190 TERLSMLFSATLSYRVQELAYEHMNNPTHVQVAPEQTTATRVSQELF--YPSDDDKMLLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L + +   K  I+F N K +   +   L   G  V  + G++ Q+ R+ IL +F +G 
Sbjct: 248 LSLFEEEWPDK-AIVFANTKYSCERVTDWLTADGHRVGLLSGDVPQKKRLGILEDFTKGK 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL I  V HVFN+D+P+ AE+Y+HRIGRTGRAG+ G A +   ++   
Sbjct: 307 LDILVATDVAARGLHIDSVTHVFNYDLPDDAEDYVHRIGRTGRAGQSGIAISFACEKYAM 366

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
           ++  IEK I+  +   + D S+L
Sbjct: 367 NLPDIEKYIQHAIPVTDYDASAL 389


>gi|190348962|gb|EDK41523.2| hypothetical protein PGUG_05621 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 666

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 141/377 (37%), Positives = 215/377 (57%), Gaps = 23/377 (6%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ 61
           L P +V  +  + + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+      
Sbjct: 205 LDPLIVENIKLSRFTKPTPVQKYSVPIVASGRDLMACAQTGSGKTGGFLFPVLSESYMNG 264

Query: 62  ---ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
              + E   A       P  L++ PTREL +Q+ +  +K+     +   ++ GG     Q
Sbjct: 265 PDAVPESQGAFSSHKVHPTALVMAPTRELVSQIFEEAKKFSYRSWVRPCVVYGGADIGTQ 324

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L+RG D+L+ TPGR+ D   RG++ ++NI+ LV+DEADRMLDMGF P I++I     
Sbjct: 325 IRNLDRGCDLLVATPGRLKDLLERGRVSLSNIKYLVLDEADRMLDMGFEPQIRHIVQECD 384

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                +RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I    +  Y +  +K
Sbjct: 385 MPGVESRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVL--YVEDDEK 442

Query: 232 CALLQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            ++L  LL + D   NG  IIF   K+   NL   L  QGF   AIHG+  Q  R K L+
Sbjct: 443 KSVLLDLLSAND---NGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALA 499

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK GT  ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G A    
Sbjct: 500 AFKSGTAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRIGRTGRAGNVGIATAFF 559

Query: 350 AKEDIKHIDAIEKLIEK 366
            + +   +  + +L+ +
Sbjct: 560 NRNNRNVVKGMIELLSE 576


>gi|146413260|ref|XP_001482601.1| hypothetical protein PGUG_05621 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 666

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 141/377 (37%), Positives = 215/377 (57%), Gaps = 23/377 (6%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ 61
           L P +V  +  + + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+      
Sbjct: 205 LDPLIVENIKLSRFTKPTPVQKYSVPIVASGRDLMACAQTGSGKTGGFLFPVLSESYMNG 264

Query: 62  ---ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
              + E   A       P  L++ PTREL +Q+ +  +K+     +   ++ GG     Q
Sbjct: 265 PDAVPESQGAFSSHKVHPTALVMAPTRELVSQIFEEAKKFSYRSWVRPCVVYGGADIGTQ 324

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L+RG D+L+ TPGR+ D   RG++ ++NI+ LV+DEADRMLDMGF P I++I     
Sbjct: 325 IRNLDRGCDLLVATPGRLKDLLERGRVSLSNIKYLVLDEADRMLDMGFEPQIRHIVQECD 384

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                +RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I    +  Y +  +K
Sbjct: 385 MPGVESRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVL--YVEDDEK 442

Query: 232 CALLQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            ++L  LL + D   NG  IIF   K+   NL   L  QGF   AIHG+  Q  R K L+
Sbjct: 443 KSVLLDLLSAND---NGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALA 499

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK GT  ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G A    
Sbjct: 500 AFKSGTAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRIGRTGRAGNVGIATAFF 559

Query: 350 AKEDIKHIDAIEKLIEK 366
            + +   +  + +L+ +
Sbjct: 560 NRNNRNVVKGMIELLSE 576


>gi|21226849|ref|NP_632771.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
 gi|20905151|gb|AAM30443.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
          Length = 587

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 134/361 (37%), Positives = 203/361 (56%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F  LGLS   + A+   G+ +PTPIQ K IPL L+   D+ G AQTGTGKT +F  P   
Sbjct: 7   FKALGLSDSTLKALKKKGFEEPTPIQEKVIPLFLKGEADIIGQAQTGTGKTTAFGAP--- 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I+EK   +    + +IL PTRELA QV++       +  L +  + GG     Q + L+ 
Sbjct: 64  IIEKIPEKSGHVQAIILTPTRELAIQVSEELNSIKGDKKLYIVPIYGGQSMTQQLRVLKS 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR++DH  R  L + +I   V+DEAD ML+MGFI  I+ I       ++ L
Sbjct: 124 GVDIVVGTPGRVIDHLERKSLNLEHIAYFVLDEADEMLNMGFIDDIKEILKSTGPNKRML 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   +  + +  +QN + I +     T    E  +     + S K   L +++  
Sbjct: 184 FFSATMPKAILGIVKKHMQNYEHITIEKEELTETLTEQIYFE--VKESDKFEALCRIIDI 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D    G++FC  K +   L   L  +G+   A+HG++ Q+ R KIL+ F++  I ++ A
Sbjct: 242 EDEF-YGLVFCRTKTDTSQLAQKLSDRGYLADALHGDLSQQEREKILNKFRKQKINILAA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T V   + + +  I+
Sbjct: 301 TDVAARGIDIMDLTHVINYALPQDPESYVHRIGRTGRAGKQGTAITFVTSTEFRRLTYIK 360

Query: 362 K 362
           K
Sbjct: 361 K 361


>gi|320588174|gb|EFX00649.1| ATP-dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 1617

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 145/372 (38%), Positives = 206/372 (55%), Gaps = 4/372 (1%)

Query: 1   MDFADLGL-SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M F  + L S  ++  +  AG+  PT IQ KTIP  +  HDV G A TG+GKTA+F+LP+
Sbjct: 263 MSFQAMRLFSRPILRGIAAAGFDTPTQIQAKTIPFGIGGHDVVGQAVTGSGKTAAFLLPI 322

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  L      V   R +IL PTRELA Q      K      +T+AL +GG  F++    L
Sbjct: 323 LERLLHRPTNVPKTRVVILTPTRELAVQCHKVAVKLAAFTPITMALTVGGTSFKSSEASL 382

Query: 120 ERGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
               D++I TPGR +DH  N     ++ +EILV+DEADRML  GF   +  I   +P  R
Sbjct: 383 RSRPDIVIGTPGRFIDHMRNSPSFAVDGVEILVLDEADRMLQDGFADELNEIVQTLPRGR 442

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-TYAQYSKKCALLQQ 237
           QTLLFSATM   + ++    L  P RI+ +  S TA T+   FV     +  ++   L +
Sbjct: 443 QTLLFSATMGASVDQLIRVGLSRPVRIQADDKSRTAGTLTQAFVRLRQGREDRRLGYLVE 502

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L  +     + IIF  +K+++          G +   +HGNI Q  R+  L +F+ G +Q
Sbjct: 503 LCTTL-YRDHAIIFFREKRSIHEARIVFGLLGLTCEELHGNIKQAERIASLESFRRGEVQ 561

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++ASDLA+RGLDI  V  V N++VP   ++YIHRIGRT RAGR G A T+V+++D K +
Sbjct: 562 FLLASDLASRGLDIKGVETVINYEVPKNLDDYIHRIGRTARAGRRGLAVTIVSEKDRKFV 621

Query: 358 DAIEKLIEKKVD 369
             + K +    D
Sbjct: 622 KEVVKAMRAGGD 633


>gi|302552490|ref|ZP_07304832.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
           40736]
 gi|302470108|gb|EFL33201.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
           40736]
          Length = 721

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 134/346 (38%), Positives = 188/346 (54%), Gaps = 5/346 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L  
Sbjct: 122 FADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLAR 181

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  GR     PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LERG
Sbjct: 182 LAGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVVGLKMKVVCGGTSMGNQIYALERG 241

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+ D  NRG   + N+E+ V+DEAD+M D+GF+P +  +   VP   Q +L
Sbjct: 242 VDILVATPGRLRDIINRGACSLENVEVAVLDEADQMSDLGFLPEVTELLDQVPAGGQRML 301

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E+  + + +L NP   EV++      T+ H  +       K  A +   + S+
Sbjct: 302 FSATMENEISTLVKRYLSNPVTHEVDSAQGNVTTMSHHILIV---KPKDKAPVTAAIASR 358

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L   G    A+HG + Q +R ++L +FK+G +  +VA+
Sbjct: 359 KGRT--IIFVRTQLGADRIAEQLCDSGVKADALHGGMTQGARTRVLEDFKKGYVNALVAT 416

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L
Sbjct: 417 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSL 462


>gi|218548978|ref|YP_002382769.1| ATP-dependent RNA helicase DbpA [Escherichia fergusonii ATCC 35469]
 gi|218356519|emb|CAQ89142.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia
           fergusonii ATCC 35469]
          Length = 457

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 131/352 (37%), Positives = 207/352 (58%), Gaps = 8/352 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY+  TP+Q   +P +L   D+   A+TG+GKTA+F L +L  ++   A +   + L+L 
Sbjct: 22  GYLTMTPVQAAALPAILAGKDIRVQAKTGSGKTAAFGLGLLQHID---ATLFQTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF  Q   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGIQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +G + +  +  LV+DEADRMLDMGF   I  +    P +RQTLLFSAT  + +  +S   
Sbjct: 139 KGTVSLEALHTLVMDEADRMLDMGFSDAIDEVIRFAPASRQTLLFSATWPEAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            ++P  IE+++  +     +H +  +    S K +LLQ+LL S     + ++FCN KK+ 
Sbjct: 199 QRDPLTIEIDSTDALPPVEQHFYETSS---SGKISLLQRLL-SVYQPSSCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L   G S  A+HG+++QR R + L  F  G+++++VA+D+AARGLDI  +  V 
Sbjct: 255 QLVCDALNDVGQSAIALHGDLEQRDRDQTLVRFANGSVRILVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           NF++    E ++HRIGRT RAG+ G A +  A E+ +  + I  +++ K++W
Sbjct: 315 NFELAWDPEVHVHRIGRTARAGKSGLAISFCAPEEAQRANIISDMLQLKLNW 366


>gi|74006746|ref|XP_861599.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 13 [Canis familiaris]
          Length = 656

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 142/386 (36%), Positives = 220/386 (56%), Gaps = 19/386 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 182 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241

Query: 63  L-------EKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
           +       E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ GG    
Sbjct: 242 IYSDGPGEENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIG 301

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT-- 171
            Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I+ I   
Sbjct: 302 QQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ 361

Query: 172 -SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
            ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V  + + S
Sbjct: 362 DTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV--WVEES 419

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR R + L 
Sbjct: 420 DKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALH 479

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G A +  
Sbjct: 480 QFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFF 539

Query: 350 AKEDIKHI-DAIEKLIEKKVD---WL 371
            + +I    D ++ L+E K +   WL
Sbjct: 540 NERNINITKDLLDLLVEAKQEVPSWL 565


>gi|229845944|ref|ZP_04466056.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 7P49H1]
 gi|229810948|gb|EEP46665.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 7P49H1]
          Length = 415

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 213/368 (57%), Gaps = 10/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L P V   +   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDLSLHPIVRDTLAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   +        PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 71  LLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P    
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPTPQV 190

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           R T+LFSAT++ ++++++   + +P+ IE+     T   I E  F   Y     K ALL 
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELF---YPSNQDKMALLL 247

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ +   +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G +
Sbjct: 248 TLMEDE-WPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDL 306

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   +
Sbjct: 307 DILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMN 366

Query: 357 IDAIEKLI 364
           + AIE+ I
Sbjct: 367 LPAIEEYI 374


>gi|268563240|ref|XP_002638790.1| Hypothetical protein CBG05145 [Caenorhabditis briggsae]
 gi|187035232|emb|CAP25672.1| hypothetical protein CBG_05145 [Caenorhabditis briggsae AF16]
          Length = 400

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 209/367 (56%), Gaps = 5/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + IP +L+  DV   AQ+GTGKTA+F + +L  
Sbjct: 29  FDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQS 88

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 89  LD---TQVRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYG 145

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   + +I   +P   Q +L
Sbjct: 146 QHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVL 205

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L+   L   
Sbjct: 206 LSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDKEEWKFDTLID--LYDT 263

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   ++FCN ++ V  L   +++  F+V ++HG+++Q+ R +++  F+ G  ++++++
Sbjct: 264 LTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGNTRVLIST 323

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ ARGLD+P V  V N+D+PN  E YIHRIGR+GR GR G A   V ++D++ +  IE+
Sbjct: 324 DVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDIEQ 383

Query: 363 LIEKKVD 369
               ++D
Sbjct: 384 YYSTQID 390


>gi|321476533|gb|EFX87493.1| hypothetical protein DAPPUDRAFT_306483 [Daphnia pulex]
          Length = 805

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 139/359 (38%), Positives = 208/359 (57%), Gaps = 16/359 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA      K++  +  + +  PTPIQ + IP  L   DV GIAQTG+GKTA+F+ PM+  
Sbjct: 302 FAHFNFDEKLMNVIRKSEFTNPTPIQSQAIPAALSGRDVIGIAQTGSGKTAAFLWPMIVH 361

Query: 62  ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL++   +    P  LIL PTREL+ Q+    +K+ K + ++V    GG     Q+K LE
Sbjct: 362 ILDQPDLKPGDGPIGLILAPTRELSQQIYTEAKKFCKVFGISVVCCYGGGSKWEQSKDLE 421

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA++++ TPGR++D        +  +  LV+DEADRM DMGF P +++I +     RQT
Sbjct: 422 QGAEIVVATPGRMIDLVKIKATNLQRVTFLVLDEADRMFDMGFEPQVRSICNHARPERQT 481

Query: 181 LLFSATMTDELQKVSENFLQNPKRI------EVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           LLFSAT    ++K++ + L +P RI      E N      + IE   +A  A+YS     
Sbjct: 482 LLFSATFKKRIEKLARDVLSDPIRIVQGDVGEAN--QDVTQVIE--VIAPTAKYSWLITR 537

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L + + S   +    IF  +K N   L  SL+ +  SV  +HG++DQ  R +++S+FK+ 
Sbjct: 538 LVEFMASGSVL----IFVTKKANAEELSASLKSRELSVALLHGDMDQVDRNQVISSFKKK 593

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            + ++VA+D+AARGLDIP +  V N+D+    + + HRIGRTGRAG  G A+TLV   D
Sbjct: 594 EMDILVATDVAARGLDIPHIRTVVNYDIARDIDTHTHRIGRTGRAGEKGTAYTLVTPAD 652


>gi|321456211|gb|EFX67324.1| hypothetical protein DAPPUDRAFT_302036 [Daphnia pulex]
          Length = 797

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 136/370 (36%), Positives = 210/370 (56%), Gaps = 9/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G+S K +  +    Y KPTPIQ +TIP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 134 WAQCGVSKKEMEILKKLAYEKPTPIQTQTIPAIMSGRDIIGIAKTGSGKTLAFLLPMFRH 193

Query: 62  ILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL++        P  +I+ PTREL  Q+    +++ K+ NL V  + GG     Q  +L+
Sbjct: 194 ILDQPALEETDGPIAIIMSPTRELCLQIGKECKRFTKSLNLRVVTVYGGTGISEQIAELK 253

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I       
Sbjct: 254 RGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNTRPD 313

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALLQ 236
           RQT++FSAT   +++ ++   L  P  I V   S     +E H  V    Q   K   L 
Sbjct: 314 RQTVMFSATFPRQMEALARRILNKPVEITVGGRSVVCADVEQHVLVMEDEQKFLKLLELL 373

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            + Q Q ++   ++F  ++++  +L   L K G+   ++HG IDQ  R   + +FK G I
Sbjct: 374 GVYQEQGSV---LVFVEKQESADDLLKDLMKAGYDCISLHGGIDQYDRDSAVVDFKNGKI 430

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +LM+A+ +AARGLD+  +  V N+D PN  E+YIHR GRTGRAG  G A+T +  +  + 
Sbjct: 431 KLMIATSVAARGLDVKHLILVVNYDCPNHHEDYIHRCGRTGRAGNKGFAYTFITPDQQRA 490

Query: 357 IDAIEKLIEK 366
              I K +E+
Sbjct: 491 AGDIIKAMEQ 500


>gi|255083352|ref|XP_002504662.1| predicted protein [Micromonas sp. RCC299]
 gi|226519930|gb|ACO65920.1| predicted protein [Micromonas sp. RCC299]
          Length = 462

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 133/360 (36%), Positives = 204/360 (56%), Gaps = 12/360 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++ G S  V+ A   A + KP+PIQ ++ P+VL  HD+ GIA TG+GKT +F LP ++
Sbjct: 51  EFSEAGFSKDVLAAT--ANFKKPSPIQAQSWPIVLSGHDMVGIAATGSGKTMAFGLPALM 108

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL + +     P+ L+L PTRELA Q A  FE  G    +    + GG P   Q K ++
Sbjct: 109 QILAQPKCAPGSPQCLVLAPTRELAQQTAKVFEDAGTACGVRCVCVYGGAPKWEQKKLMQ 168

Query: 121 RGAD--VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +G    V++ TPGR+ D  N G + ++ + +LV+DEADRMLD+GF P I+ I       R
Sbjct: 169 QGGGCAVIVATPGRLRDFMNDGDVKLDKVTMLVLDEADRMLDLGFEPEIREIAGKTRADR 228

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPS-----STAETIEHCFVATYAQYSKKCA 233
           QT++FSAT    +Q ++  F+ NP ++ +         S  + +E   V    + +    
Sbjct: 229 QTVMFSATWPTSIQGLAAEFMCNPVKVRIGAEGLKASHSVTQVVE--VVEPNEKDAHLAR 286

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +L++ L  +  +   ++F   KK    L  +L +Q +    IHG++ QR R   +  FK 
Sbjct: 287 VLKKYLGGKKPVPRTLVFALYKKECARLHENLRRQNWQAACIHGDMSQRDRELSVEAFKS 346

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G+  L++A+D+AARGLDI  V +V N+  P   E+Y+HRIGRTGRAG+ G A T   + D
Sbjct: 347 GSSPLLIATDVAARGLDIKGVEYVINYTFPLTTEDYVHRIGRTGRAGQTGLAHTFFTQHD 406


>gi|289342912|ref|NP_001166066.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [Bos taurus]
 gi|284794217|gb|ADB93367.1| DEAD box polypeptide 3 Y-linked short isoform [Bos taurus]
 gi|296470425|gb|DAA12540.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [Bos taurus]
          Length = 660

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 220/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 182 FSDVAMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 242 IYTDGPGEALKAVKESGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVLPCVVY 301

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 302 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 361

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 362 RRIIEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 420

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + + K + L  LL +  T    ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 421 -WVEEADKRSFLLDLLNATGTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 479

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P   E Y+HRIGRTGR G  G
Sbjct: 480 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNLG 539

Query: 344 KAFTLVAKEDIK-HIDAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 540 LATSFFNERNINISKDLLDLLVEAKQEVPSWL 571


>gi|284794215|gb|ADB93366.1| DEAD box polypeptide 3 Y-linked long isoform [Bos taurus]
          Length = 661

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 220/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 182 FSDVAMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 242 IYTDGPGEALKAVKESGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVLPCVVY 301

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 302 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 361

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 362 RRIIEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 420

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + + K + L  LL +  T    ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 421 -WVEEADKRSFLLDLLNATGTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 479

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P   E Y+HRIGRTGR G  G
Sbjct: 480 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNLG 539

Query: 344 KAFTLVAKEDIK-HIDAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 540 LATSFFNERNINISKDLLDLLVEAKQEVPSWL 571


>gi|238897679|ref|YP_002923358.1| ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465436|gb|ACQ67210.1| ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 454

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 210/368 (57%), Gaps = 4/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +  L P ++ A+ D GY+  T IQ   IP  ++  D+ G A TGTGKT +F++P L  
Sbjct: 6   FCEFDLDPCLLRALEDKGYLSATAIQTTVIPKAMEGRDLLGSAPTGTGKTIAFLIPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++  + +   PR LIL PTRELA QVAD   +  K  +L VA + GG+ +    +    
Sbjct: 66  LIDFPKKKPGPPRILILAPTRELAIQVADQATELAKYTSLKVAKITGGVAYMNHTEIFST 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+L+ T GR+L +          +EIL++DEADRMLDMGF   I+ I++   + +QTL
Sbjct: 126 NQDILVATTGRLLQYIKEENFDCRAVEILILDEADRMLDMGFAQDIEVISAETRWRKQTL 185

Query: 182 LFSATM-TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+ +  +++ SE  L++P  +E        + I   +  +      K ALL  LL+
Sbjct: 186 LFSATLESATIREFSERVLRDPIYLEAAPSVRERKKILQSYYRS-DNLPHKIALLCYLLK 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +    K+ IIF   ++ V  L H L+ +G     + G + Q  R + ++    G IQ++V
Sbjct: 245 TPSVQKS-IIFVRTREKVHELVHRLQSEGIHSGYLEGEMVQTKRTEAIARLNSGRIQVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI D+ HVFNFD+P   + Y+HRIGRT RAGR G A +L+   D   +  +
Sbjct: 304 ATDVASRGLDIEDISHVFNFDMPYTGDVYLHRIGRTARAGRKGTAISLIEAHDHLLLKKV 363

Query: 361 EKLIEKKV 368
           E+ ++K +
Sbjct: 364 ERYLKKTI 371


>gi|294898580|ref|XP_002776285.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239883195|gb|EER08101.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 654

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 208/366 (56%), Gaps = 19/366 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +  L   ++  +  AG+V PTPIQ++  P+ L   D+ GIA+TG+GKT +F+LP +  
Sbjct: 201 FEEACLPDYIMVEIQKAGFVSPTPIQVQGWPVALSGRDMVGIAETGSGKTLAFLLPAVVH 260

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L+KG      P  L+L PTRELA Q+ +  +++G++  ++     GG+P   Q 
Sbjct: 261 INAQPYLQKGDG----PIVLVLAPTRELALQIKEECDRFGRSSRISNTCCYGGVPRGPQA 316

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+ G ++ I TPGR++D        +  +  LV+DEADRMLDMGF P ++ I S +  
Sbjct: 317 RMLQNGVEICIATPGRLIDFLESEVTNLRRVTYLVLDEADRMLDMGFEPQVRKIVSQIRP 376

Query: 177 TRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            RQTL++SAT   ++Q+++ +   + P  + V         I+  FV    + + K   L
Sbjct: 377 DRQTLMWSATWPKDVQQLARDLCNEEPVHVTVGQSGHACHNIQQ-FVEVVEE-NVKSERL 434

Query: 236 QQLLQSQDTMKNGI------IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           Q L+++  +   G+      IF + K+   ++   L + G+   +IHG+  Q  R  +L+
Sbjct: 435 QALMRAVASASGGVFDAKALIFTDTKRCADDITRVLRRDGWPALSIHGDKKQSERDWVLA 494

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G + +M+A+D+A+RGLD+ DV +V N+D P   E+Y+HRIGRTGRAG HG A++  
Sbjct: 495 EFKSGRMPIMIATDVASRGLDVKDVKYVINYDFPGTVEDYVHRIGRTGRAGAHGTAYSFF 554

Query: 350 AKEDIK 355
             +  K
Sbjct: 555 TADKAK 560


>gi|224551506|gb|ACN54195.1| Ddx3y [Bos taurus]
          Length = 635

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 220/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 182 FSDVAMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 242 IYTDGPGEALKAVKESGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVLPCVVY 301

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 302 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 361

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 362 RRIIEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 420

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + + K + L  LL +  T    ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 421 -WVEEADKRSFLLDLLNATGTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 479

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P   E Y+HRIGRTGR G  G
Sbjct: 480 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNLG 539

Query: 344 KAFTLVAKEDIK-HIDAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 540 LATSFFNERNINISKDLLDLLVEAKQEVPSWL 571


>gi|239995669|ref|ZP_04716193.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii ATCC 27126]
          Length = 408

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 135/359 (37%), Positives = 203/359 (56%), Gaps = 4/359 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   +  A  D G+  PT IQ   IP  L   D+   A TGTGKTA+F+LP  
Sbjct: 1   MTFEELELDEALCHAAADMGFETPTSIQELVIPHALDGRDILASAPTGTGKTAAFLLPAC 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +    R LIL PTRELA QV +      K+  +   ++ GGI +    + L
Sbjct: 61  QFLLDYPRRQPGATRILILTPTRELALQVYEQALAITKHTQIVCGVITGGINYGTDKETL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+L+ TPGR+L+H  +      +IE L++DEADRMLDMGF   +  I +   + +Q
Sbjct: 121 SKNLDILVATPGRLLEHIEKEAADCRDIECLILDEADRMLDMGFSTVVNQIAAEARWRKQ 180

Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            LLFSAT+  + ++  + + L NP+ IE N PS   +   H +       + K ALL  +
Sbjct: 181 NLLFSATLEGKGVKTFAHDILNNPEVIEAN-PSRKEKNKIHQWYHLADDMNHKQALLVNI 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ Q+T  + ++F   ++ +  L   L  +   VC + G + Q  R+  L+ FK G + +
Sbjct: 240 LK-QETTTSAVVFVKTRERLQMLKDFLASKDIPVCWLQGEMPQDKRIAALARFKSGEVPI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++A+D+AARG+D+P+V HV NFD+P +A+ Y+HRIGRTGRAG  G A +LV   D   +
Sbjct: 299 LLATDVAARGIDVPNVSHVINFDMPRKADVYVHRIGRTGRAGAKGTAISLVEAHDFDMV 357


>gi|223590230|sp|A5DQS0|DED1_PICGU RecName: Full=ATP-dependent RNA helicase DED1
          Length = 637

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 141/377 (37%), Positives = 215/377 (57%), Gaps = 23/377 (6%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ 61
           L P +V  +  + + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+      
Sbjct: 176 LDPLIVENIKLSRFTKPTPVQKYSVPIVASGRDLMACAQTGSGKTGGFLFPVLSESYMNG 235

Query: 62  ---ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
              + E   A       P  L++ PTREL +Q+ +  +K+     +   ++ GG     Q
Sbjct: 236 PDAVPESQGAFSSHKVHPTALVMAPTRELVSQIFEEAKKFSYRSWVRPCVVYGGADIGTQ 295

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L+RG D+L+ TPGR+ D   RG++ ++NI+ LV+DEADRMLDMGF P I++I     
Sbjct: 296 IRNLDRGCDLLVATPGRLKDLLERGRVSLSNIKYLVLDEADRMLDMGFEPQIRHIVQECD 355

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                +RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I    +  Y +  +K
Sbjct: 356 MPGVESRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVL--YVEDDEK 413

Query: 232 CALLQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            ++L  LL + D   NG  IIF   K+   NL   L  QGF   AIHG+  Q  R K L+
Sbjct: 414 KSVLLDLLSAND---NGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALA 470

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK GT  ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G A    
Sbjct: 471 AFKSGTAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRIGRTGRAGNVGIATAFF 530

Query: 350 AKEDIKHIDAIEKLIEK 366
            + +   +  + +L+ +
Sbjct: 531 NRNNRNVVKGMIELLSE 547


>gi|325676734|ref|ZP_08156407.1| ATP-dependent RNA helicase [Rhodococcus equi ATCC 33707]
 gi|325552282|gb|EGD21971.1| ATP-dependent RNA helicase [Rhodococcus equi ATCC 33707]
          Length = 421

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 126/341 (36%), Positives = 190/341 (55%), Gaps = 5/341 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL P +V A+  AG   P PIQ  TIP +L   DV G   TG+GKT +F LP+L  
Sbjct: 9   FAQLGLPPILVHALGRAGISAPFPIQAATIPDILAGRDVLGRGPTGSGKTLAFGLPLLVR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G +R   PR ++L PTRELAAQ+    ++      L  A ++GG+PF+AQ  KL R 
Sbjct: 69  LKGGASRPSRPRAVVLAPTRELAAQIEKALDEPALALGLRTATIVGGVPFKAQAVKLSRT 128

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV+I TPGR+ DH ++G + ++++ I  +DEAD M ++GF+P +  I    P T Q LL
Sbjct: 129 VDVVIATPGRLADHVSQGTITLDDVRITTVDEADHMAELGFLPQVTEILDRTPETAQRLL 188

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  E+  +   +L +P         +  +++EH  +  +     K   + ++   +
Sbjct: 189 FSATLDGEVDTLVARYLHDPVTHATAEAVAAVDSMEHHVL--HVPREIKYPTVARIAARK 246

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K  V  L   L   G +   +HG+  Q  R ++L+ F  GT+ ++VA+
Sbjct: 247 GRT---LLFVRTKAGVDRLTDELRAAGIAAGGLHGDKPQGHRTRVLAEFASGTLPVLVAT 303

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G
Sbjct: 304 DVAARGIHVDDVSLVVHVDPPTEPKAYLHRAGRTARAGESG 344


>gi|256823808|ref|YP_003147771.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256797347|gb|ACV28003.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 420

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 148/419 (35%), Positives = 241/419 (57%), Gaps = 19/419 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F+DLGL PK++ AV D G+   TPIQ K++PL+L+  +V G AQTGTGKT +F+L +   
Sbjct: 11  FSDLGLDPKLLKAVADLGFEYCTPIQAKSLPLLLKGQNVAGQAQTGTGKTIAFLLAIMND 70

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            LT+ E    R   PR+LI+ PTRELA Q+A +  +  K+ +L + ++ GG   E Q ++
Sbjct: 71  ILTLPEIEGRRKNEPRSLIMAPTRELAVQIAKDAVQLAKHTDLKIRVVYGGEDHEKQRQQ 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176
           L  G D+LI T GR++D+F      +  I+ +V+DEADRM D+GFI  I+ + + +P   
Sbjct: 131 LIDGVDILIGTTGRLIDYFKTKAFGLEAIDSVVLDEADRMFDLGFIKDIRYLFNRMPPAT 190

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R  +LFSAT++  +Q+++   + NP+ ++V T   +A  I       Y    +   LL 
Sbjct: 191 DRLNMLFSATLSHRVQELAYEHMNNPQHVQVQTQQVSANKIREALF--YPSREEALPLLV 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L+Q  +  K+ I+F N K+   ++   L         + G++ Q+ R+++L   K   +
Sbjct: 249 GLMQRLEPEKS-IVFTNTKRAAEHVWACLAGNDIKAGLLTGDVHQKKRLRLLDELKNDDV 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++V +D+AARGL I  V HVFN+ +P+ AE+Y+HRIGRT RAG  G A +   ++   +
Sbjct: 308 SVLVCTDVAARGLHIDGVTHVFNYHLPDDAEDYVHRIGRTARAGAEGDAISFAGEDFAMN 367

Query: 357 IDAIEKLIEK---KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           + AIE+ +     K++  +  L++L P L    I Q    ++ +P  ++  G  R  +N
Sbjct: 368 LTAIEQYVGHNLPKLEIKSEYLANLKPSLP---IQQ----KRRHPTQRRGGGKPRHPRN 419


>gi|198274009|ref|ZP_03206541.1| hypothetical protein BACPLE_00145 [Bacteroides plebeius DSM 17135]
 gi|198273087|gb|EDY97356.1| hypothetical protein BACPLE_00145 [Bacteroides plebeius DSM 17135]
          Length = 629

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 129/369 (34%), Positives = 219/369 (59%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+S ++  A+ + GY  P P+Q + IP +L   +DV  +AQTGTGKTA+F LP++ 
Sbjct: 4   FEELGVSQEIRKAIEEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLPLI- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
             +K   +  +P+ L+L PTREL  Q+A +   Y K   +L +  + GG   ++Q + ++
Sbjct: 63  --QKIDVKNCVPQALVLCPTRELCLQIAGDLTDYSKYITDLKILPVYGGSSIDSQIRSMK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++D   R    +  +  +V+DEAD ML+MGF   I  I   VP  R T
Sbjct: 121 RGVHIIVATPGRLIDLMERKVARLETVRDVVMDEADEMLNMGFTDSINTILENVPNDRNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSATM+ E+ ++++ +L + K I + T +  ++ + H  VA       K   L++++ 
Sbjct: 181 LMFSATMSPEIARIAKTYLHDAKEITIGTKNEGSKNVNH--VAYIVHAKDKYLALKRVVD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +  GI+FC  +K    +   L + G+S  ++HG + Q  R  ++  F++  +QL+V
Sbjct: 239 FYPQI-YGIVFCRTRKETQEIADKLIQDGYSADSLHGELSQAQRDLVMQKFRQRHLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  I
Sbjct: 298 ATDVAARGLDVDSLTHVINYGLPDDIESYTHRSGRTGRAGKTGISIAIINLREKGKMREI 357

Query: 361 EKLIEKKVD 369
           E++I+KK +
Sbjct: 358 ERIIKKKFE 366


>gi|311244125|ref|XP_001925444.2| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Sus
           scrofa]
          Length = 643

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 135/358 (37%), Positives = 209/358 (58%), Gaps = 4/358 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P+V+  +  AG+ KPTPIQ +  P++LQ  D+ G+AQTGTGKT S+++P    ++     
Sbjct: 248 PEVMINIKKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHVDSQPVA 307

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  L+L PTRELA QV     KY     L    + GG   + Q K L +G D++I T
Sbjct: 308 RNGPGMLVLTPTRELALQVEAECSKYSYK-GLKSVCVYGGGDRDGQIKDLLKGVDIIIAT 366

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGR+ D      + + +I  LV+DEAD+MLDMGF P I  I   +   RQT++ SAT   
Sbjct: 367 PGRLNDLQMNNFVYLKSISYLVLDEADKMLDMGFEPQIMKILLDIRPDRQTVMTSATWPY 426

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
            ++++++++L+ P  + V T    A  T++   + T     +K + +Q  ++S       
Sbjct: 427 AVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIVTTE--DEKRSHIQTFIESMSPKDKV 484

Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           IIF ++K    +L   L  +  SV ++HGN +Q  R + L NFK G +++++A+DLA+RG
Sbjct: 485 IIFVSRKAVADHLSSDLGIRHISVESLHGNREQGDRERALKNFKTGKVRILIATDLASRG 544

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           LD+ DV HV+N+D P   E Y+HR+GRTGRAGR G + TL+ + D K    +  ++E+
Sbjct: 545 LDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRSDWKIAGELIHILER 602


>gi|209918588|ref|YP_002292672.1| ATP-dependent RNA helicase DbpA [Escherichia coli SE11]
 gi|218553903|ref|YP_002386816.1| ATP-dependent RNA helicase DbpA [Escherichia coli IAI1]
 gi|293433706|ref|ZP_06662134.1| ATP-independent RNA helicase DbpA [Escherichia coli B088]
 gi|209911847|dbj|BAG76921.1| ATP-dependent RNA helicase [Escherichia coli SE11]
 gi|218360671|emb|CAQ98232.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           IAI1]
 gi|291324525|gb|EFE63947.1| ATP-independent RNA helicase DbpA [Escherichia coli B088]
 gi|320199384|gb|EFW73975.1| ATP-dependent RNA helicase DbpA [Escherichia coli EC4100B]
 gi|323947687|gb|EGB43690.1| DEAD/DEAH box helicase [Escherichia coli H120]
          Length = 457

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 218/377 (57%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W     +S   PLE
Sbjct: 363 KLNWQTPPANSSILPLE 379


>gi|331214536|ref|XP_003319949.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Puccinia
            graminis f. sp. tritici CRL 75-36-700-3]
 gi|309298939|gb|EFP75530.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Puccinia
            graminis f. sp. tritici CRL 75-36-700-3]
          Length = 1329

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 131/372 (35%), Positives = 214/372 (57%), Gaps = 9/372 (2%)

Query: 1    MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            M ++  GL    +  V   GY  PTPIQ + +P ++   DV G+A+TG+GKT +F+LPM 
Sbjct: 650  MKWSWFGLHAACLEVVKSLGYQSPTPIQGQAVPAIMSGRDVIGVAKTGSGKTLAFLLPMF 709

Query: 61   TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
              ++  R    +  P  +I+ PTRELA Q+      + K+  L  A   GG P +     
Sbjct: 710  RHIKDQRPLDALEGPIAMIMTPTRELATQIYKEGRPFLKSLGLRAACAYGGSPLKDNIAD 769

Query: 119  LERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++RGA+V++CTPGR+++    N G+++ M  +  LV+DEADRM DMGF P +  I + + 
Sbjct: 770  MKRGAEVIVCTPGRMIELLTTNSGRVINMRRVTYLVLDEADRMFDMGFEPQVMKIVNQIR 829

Query: 176  FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              RQT+LFSAT   +++ ++   L+ P  I V   S  A  IE   V      +K   LL
Sbjct: 830  PDRQTVLFSATFPKQMEALARKILRRPLEITVGGRSVVASEIEQ-IVEVRQDSTKFNRLL 888

Query: 236  QQLLQS--QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            + L +S  +D+    ++F +++++  NL   L K+G+   ++HG  +Q  R +++++FK 
Sbjct: 889  EILGRSYNEDSESRSLVFVDRQESADNLFRDLLKKGYPCLSLHGGKEQVDRDQVIADFKS 948

Query: 294  GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G   T +A + 
Sbjct: 949  GVTPIVIATSVAARGLDVKQLKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCITFIAPDQ 1008

Query: 354  IKH-IDAIEKLI 364
             ++ +D +  L+
Sbjct: 1009 ERYAVDLLRALV 1020


>gi|126644777|ref|XP_001388110.1| hypothetical protein [Cryptosporidium parvum Iowa II]
 gi|126117338|gb|EAZ51438.1| hypothetical protein cgd3_2330 [Cryptosporidium parvum Iowa II]
          Length = 862

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 132/355 (37%), Positives = 203/355 (57%), Gaps = 3/355 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G SPK++ ++   GY  PTPIQ K  P +L   DV  +A+TG+GKTA FVLPM+  
Sbjct: 6   FQCFGFSPKLLESIKIIGYSLPTPIQRKCFPSILAGRDVVAMARTGSGKTAGFVLPMIER 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L    +++   R +IL PTRELA Q      K     NL V  L GG   + Q + L   
Sbjct: 66  LGCSHSQIVGIRGVILSPTRELALQTYRVVRKLACKTNLVVCALTGGSSLDRQFESLSGN 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+  H     L +  ++I+V+DEADR+ +MG    I+ I   +P  RQ +L
Sbjct: 126 PDIVVATPGRLFHHIIEAGLSLIAVKIIVLDEADRLFEMGLASQIEKILESIPKNRQCVL 185

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM   L   S+  L  P+ I++++    +ET++  F+  + +  +K A L  LL++ 
Sbjct: 186 VSATMPTALASFSKVMLNEPEVIQIDSDYILSETLKLTFL--FVREDEKLASLLYLLRNT 243

Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  IIFC  K +V  +   LE     V  I+GN+DQ +R   L+ F++   + ++ 
Sbjct: 244 IPSHERAIIFCATKHHVDYIVKILESNNIIVSYIYGNMDQEARTMHLNTFRKNKSRALIV 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +D+AARG+DIP + +V NFD P   + ++HR GRT RAG+HG+AF+L+   D+ +
Sbjct: 304 TDIAARGVDIPMIKYVINFDFPLSPKLFVHRTGRTARAGQHGRAFSLITSRDLPY 358


>gi|86147794|ref|ZP_01066101.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           MED222]
 gi|85834432|gb|EAQ52583.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           MED222]
          Length = 412

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 138/366 (37%), Positives = 202/366 (55%), Gaps = 7/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L+PK V A+  + + KPT IQ   IP ++   DV  +AQTG+GKT +F LP+L
Sbjct: 1   MSFDSLTLNPKTVSAI-PSQFNKPTEIQQAVIPTIIAEKDVLALAQTGSGKTLAFGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V   + +I+ PTRELA+QVA   E      ++    L GG+  E Q ++L 
Sbjct: 60  NSIKHD---VNELQAIIIVPTRELASQVAKALEPIATTLDIKTVTLTGGVDIEIQQQQLL 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+       KL +   + L++DEADR+LDMGF P +Q I S +P   QT
Sbjct: 117 EKPQLVIATPGRLHAVIQENKLELTQCKSLILDEADRLLDMGFWPDVQTIISALPKKHQT 176

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL   +E  L NP ++  +  +S    IE        + SK  AL+   L 
Sbjct: 177 LLFSATLPKELISQTEALLVNPVKVTTHQENSVVAAIEETLYLVN-KGSKAQALIA--LL 233

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +Q      ++F   K N   L   L K   SV A+HGN  Q  R + L +FK G  ++++
Sbjct: 234 NQHAWSQVLVFIGAKDNADALTKRLSKAKISVNALHGNKSQEEREQALESFKNGKTRVLI 293

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+ I  +  V NFD+P+ +  Y+HR+GRT RAG  G A +LV+  +  +++AI
Sbjct: 294 ATDVMARGIHIDQLPVVINFDLPSHSATYVHRVGRTARAGSTGSAISLVSHSETDYLNAI 353

Query: 361 EKLIEK 366
             L  K
Sbjct: 354 RTLTNK 359


>gi|324113196|gb|EGC07171.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
          Length = 463

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 131/352 (37%), Positives = 207/352 (58%), Gaps = 8/352 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY+  TP+Q   +P +L   D+   A+TG+GKTA+F L +L  ++   A +   + L+L 
Sbjct: 28  GYLTMTPVQAAALPAILAGKDIRVQAKTGSGKTAAFGLGLLQHID---ATLFQTQALVLC 84

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF  Q   L+    +++ TPGR+LDH  
Sbjct: 85  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGIQRDSLQHAPHIIVATPGRLLDHLQ 144

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +G + +  +  LV+DEADRMLDMGF   I  +    P +RQTLLFSAT  + +  +S   
Sbjct: 145 KGTVSLEALHTLVMDEADRMLDMGFSDAIDEVIRFAPASRQTLLFSATWPEAIAAISGRV 204

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            ++P  IE+++  +     +H +  +    S K +LLQ+LL S     + ++FCN KK+ 
Sbjct: 205 QRDPLTIEIDSTDALPPVEQHFYETSS---SGKISLLQRLL-SVYQPSSCVVFCNTKKDC 260

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L   G S  A+HG+++QR R + L  F  G+++++VA+D+AARGLDI  +  V 
Sbjct: 261 QLVCDALNDVGQSAIALHGDLEQRDRDQTLVRFANGSVRILVATDVAARGLDIKSLELVV 320

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           NF++    E ++HRIGRT RAG+ G A +  A E+ +  + I  +++ K++W
Sbjct: 321 NFELAWDPEVHVHRIGRTARAGKSGLAISFCAPEEAQRANIISDMLQLKLNW 372


>gi|302786394|ref|XP_002974968.1| hypothetical protein SELMODRAFT_232454 [Selaginella moellendorffii]
 gi|300157127|gb|EFJ23753.1| hypothetical protein SELMODRAFT_232454 [Selaginella moellendorffii]
          Length = 408

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 137/342 (40%), Positives = 199/342 (58%), Gaps = 7/342 (2%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM---PR 74
           +G+ KP+PIQ  + P +L   D+ GIA TG+GKT +F +P L  IL   +   +     R
Sbjct: 5   SGFEKPSPIQAHSWPFLLDGRDLIGIAATGSGKTLAFGVPALVHILNHKKKEKKHSKGSR 64

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTRELA Q+A   E+ G +  + V  L GG     Q   L  G D+++ TPGR+ 
Sbjct: 65  CLVLSPTRELAQQIAAVLEEAGASCGVKVVCLYGGSSKGPQYSSLRSGCDIVVATPGRLQ 124

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D  + G   ++ I  LV+DEADRMLD+GF P ++ I S +P  RQT++ SAT    +QK+
Sbjct: 125 DFVDEGVCKLDQITYLVLDEADRMLDLGFEPAVRAIVSHIPQERQTIMLSATWPTSVQKL 184

Query: 195 SENFLQN--PKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI-IF 251
           ++ F+Q+  P +I V +   +A       V      S+   L + L     T +N + +F
Sbjct: 185 AQEFIQDASPVKITVGSEDLSANHDVTQIVEVLDDKSRDRRLQELLRLYHKTKRNRVLVF 244

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
              KK  V + + L+KQG+ V  IHG+  Q++R + LS FK+G+  L++A+D+AARGLDI
Sbjct: 245 VLYKKEAVRVENFLQKQGWKVTGIHGDKSQQARNQALSAFKDGSHPLLIATDVAARGLDI 304

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           PDV  V N+  P   E+Y+HRIGRTGRAG+ G A T     D
Sbjct: 305 PDVEFVINYSFPLTTEDYVHRIGRTGRAGKKGTAHTFFTTAD 346


>gi|257205736|emb|CAX82519.1| belle [Schistosoma japonicum]
          Length = 939

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 149/395 (37%), Positives = 220/395 (55%), Gaps = 24/395 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   +   V  A Y+ PTP+Q   +P++  + D+   AQTG+GKTA+F+LP+L 
Sbjct: 159 SFNDVELHQVIKENVTRAQYIHPTPVQKYALPIISAKRDLMACAQTGSGKTAAFLLPILN 218

Query: 62  IL------EKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
           +L      E   A     +  P  LIL PTREL++Q+ D   K+    N+   ++ GG  
Sbjct: 219 MLFEDKHCENPEASTLNCIAYPVALILAPTRELSSQIYDEARKFSYRSNIKPCVVYGGAS 278

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
             AQ ++L  G ++L+ TPGR++D  +RGK+ +  I   V+DEADRMLDMGF P I+ I 
Sbjct: 279 ILAQIRELSHGCNLLVATPGRLVDMVSRGKVSLEQIRFFVLDEADRMLDMGFEPQIRRIV 338

Query: 172 ---SLVPF-TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATY 225
               + P   RQTL+FSAT   E+Q ++ +FL +   + V    ST E I  E   VA  
Sbjct: 339 EQHGMPPAGKRQTLMFSATFPKEIQTLARDFLHSYIFLAVGRVGSTNENIIQEVLNVAD- 397

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
                K  +L +LLQ +D     ++F   K+    L   L +  F V +IHG+  Q  R 
Sbjct: 398 ---KDKPDMLVRLLQGKDPDGLALVFVETKRGADILAKFLCQLNFPVASIHGDRPQTERE 454

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L +F+ G   +++A+ +AARGLDIP+V HV NFD+P+  E Y+HRIGRTGR G+ G A
Sbjct: 455 HALQSFRSGRTPILIATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRMGQSGSA 514

Query: 346 FTLVAKEDIKHI-DAIEKLIEKK---VDWLNGDLS 376
            +  ++++   + D +E L E K     WL   +S
Sbjct: 515 TSFFSEKNQNVVRDLVELLRESKQPVPPWLEARVS 549


>gi|323185489|gb|EFZ70850.1| ATP-independent RNA helicase dbpA [Escherichia coli 1357]
          Length = 437

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 137/365 (37%), Positives = 213/365 (58%), Gaps = 8/365 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   A +   + L+L 
Sbjct: 2   GYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID---ASLFQTQALVLC 58

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF  Q   L+    +++ TPGR+LDH  
Sbjct: 59  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 118

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT  + +  +S   
Sbjct: 119 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRYAPASRQTLLFSATWPEAIAAISGRV 178

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     + ++FCN KK+ 
Sbjct: 179 QRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPSSCVVFCNTKKDC 234

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 235 QAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVV 294

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ K++W     +S 
Sbjct: 295 NFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSS 354

Query: 379 NPPLE 383
             PLE
Sbjct: 355 ILPLE 359


>gi|320540013|ref|ZP_08039670.1| putative ATP-dependent RNA helicase, specific for 23S rRNA
           [Serratia symbiotica str. Tucson]
 gi|320029936|gb|EFW11958.1| putative ATP-dependent RNA helicase, specific for 23S rRNA
           [Serratia symbiotica str. Tucson]
          Length = 461

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 135/370 (36%), Positives = 220/370 (59%), Gaps = 8/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L  + +  +   GYV+ TP+Q+  +P +L+  DV   A+TG+GKTA+F    + +
Sbjct: 6   FSSLPLPAEQLANLNQLGYVEMTPVQLAALPAILKGQDVRAKAKTGSGKTAAF---GIGV 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+     +   + LIL PTRELA Q++    +  +   N+ +  L GG P   Q   L  
Sbjct: 63  LDNINVALVSTQALILCPTRELADQMSKELRRLARFTQNIKILTLCGGQPLGPQLDSLVH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRIL+H  +  L++  +++LV+DEADRMLDMGF   I  + S  P  RQTL
Sbjct: 123 APHIVVGTPGRILEHLRKKTLVLEMLKVLVLDEADRMLDMGFADDIDEVISETPPQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   +++++S    + P +IEV+       TIE  F  T A  +++ ALL  +++ 
Sbjct: 183 LFSATYPADIERISARVQREPLKIEVDN-GDEQTTIEQRFYETTA--NQRAALLVSVIRH 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + ++FCN K++   +  +LE  G SV A+HG+++QR R ++L  F   + +++VA
Sbjct: 240 YQP-ASCVVFCNTKRDCQTVFEALEAYGISVLALHGDLEQRERDQVLVRFTNRSCRVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++  V N+++    + ++HRIGRTGRAGRHG A +L   +++    AIE
Sbjct: 299 TDVAARGLDITELELVVNYELAFDPQVHVHRIGRTGRAGRHGLAISLCTPQEMVRAHAIE 358

Query: 362 KLIEKKVDWL 371
             ++ K+ W+
Sbjct: 359 DDMQMKITWV 368


>gi|191165035|ref|ZP_03026879.1| ATP-independent RNA helicase DbpA [Escherichia coli B7A]
 gi|309797091|ref|ZP_07691489.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|190904807|gb|EDV64512.1| ATP-independent RNA helicase DbpA [Escherichia coli B7A]
 gi|308119261|gb|EFO56523.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
          Length = 457

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 218/377 (57%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W     +S   PLE
Sbjct: 363 KLNWQTPPANSSILPLE 379


>gi|325497405|gb|EGC95264.1| ATP-dependent RNA helicase DbpA [Escherichia fergusonii ECD227]
          Length = 457

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 131/352 (37%), Positives = 207/352 (58%), Gaps = 8/352 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY+  TP+Q   +P +L   D+   A+TG+GKTA+F L +L  ++   A +   + L+L 
Sbjct: 22  GYLTMTPVQAAALPAILAGKDIRVQAKTGSGKTAAFGLGLLQHID---ATLFQTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF  Q   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGIQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +G + +  +  LV+DEADRMLDMGF   I  +    P +RQTLLFSAT  + +  +S   
Sbjct: 139 KGTVSLEALHTLVMDEADRMLDMGFSDAIDEVIRFAPASRQTLLFSATWPEAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            ++P  IE+++  +     +H +  +    S K +LLQ+LL S     + ++FCN KK+ 
Sbjct: 199 QRDPLTIEIDSTDALPPVEQHFYETSS---SGKISLLQRLL-SVYQPSSCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L   G S  A+HG+++QR R + L  F  G+++++VA+D+AARGLDI  +  V 
Sbjct: 255 QLVCDALNDVGQSAIALHGDLEQRDRDQTLVRFANGSVRILVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           NF++    E ++HRIGRT RAG+ G A +  A E+ +  + I  +++ K++W
Sbjct: 315 NFELAWDPEVHVHRIGRTARAGKSGLAISFCAPEEAQRANIISDMLQLKLNW 366


>gi|323359563|ref|YP_004225959.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
 gi|323275934|dbj|BAJ76079.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
          Length = 482

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 140/370 (37%), Positives = 213/370 (57%), Gaps = 17/370 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+   +V A+   G V   PIQ +TIPL L   D+ G A+TGTGKT  F +P++  
Sbjct: 4   FAELGVDQDIVDALASKGIVDAFPIQEQTIPLGLPGQDIIGQAKTGTGKTFGFGIPVVQR 63

Query: 63  L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    E G       + LI+ PTRELA QV ++ +    N   +V  + GG  +E Q  +
Sbjct: 64  LGLNPEPGV------KALIVVPTRELAVQVYEDMDMLTSNRPTSVVAIYGGKAYEGQIDQ 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ GA +++ TPGR++D  N+  L ++N   +V+DEAD+MLD+GF+  I+ I S VP  R
Sbjct: 118 LKAGAQIVVGTPGRLIDLANQRLLDLSNATEVVLDEADKMLDLGFLADIEKIFSKVPPVR 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS--TAETIEHCFVATYAQYS-KKCALL 235
            T LFSATM   +  ++  F+ NP  +  N P    T   I+H     Y  +S  K  ++
Sbjct: 178 HTQLFSATMPGPIVALARRFMSNPIHMRANDPDEGLTQANIKHLV---YRAHSLDKDEVI 234

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            ++LQS+   K  +IF   K+    L   L  +GF+  A+HG++ Q +R + ++ FK G 
Sbjct: 235 ARILQSEGREK-AVIFTRTKRAAQKLVDELGDRGFNAAAVHGDMSQEARERSMAAFKAGK 293

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +++A+D+AARG+D+ DV HV N  +P+  + Y+HR GRTGRAG+ G A T V  +D+ 
Sbjct: 294 KDVLIATDVAARGIDVNDVTHVINHTIPDDEKTYLHRAGRTGRAGKTGIAVTFVDWDDLH 353

Query: 356 HIDAIEKLIE 365
               I + +E
Sbjct: 354 KWALINRALE 363


>gi|194216191|ref|XP_001497891.2| PREDICTED: similar to mCG15236 [Equus caballus]
          Length = 563

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 140/371 (37%), Positives = 216/371 (58%), Gaps = 5/371 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT S+++P    L+     
Sbjct: 168 PEVMENIQKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLSYLMPGFIHLDSQPIE 227

Query: 70  VR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
            R  P  L+L PTRELA QV     KY     L    + GG     Q + L +G D++I 
Sbjct: 228 KRNGPGMLVLTPTRELALQVEAECSKYSYK-GLKSVCIYGGGDRNGQIQDLTKGVDIIIA 286

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR+ D      + + ++  LV+DEAD+MLDMGF P I  I   V   RQT++ SAT  
Sbjct: 287 TPGRLNDLQMNNFVNLKSVTYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSATWP 346

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
             ++++++++L+ P  + V T    A  T++   + T  +  +K + +Q  L+S      
Sbjct: 347 YSVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIVTTEE--EKRSHIQTFLESMSPKDK 404

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            I+F ++K    +L   L  Q  SV ++HGN +Q  R + L NFK G +++++A+DLA+R
Sbjct: 405 VIVFVSRKAVADHLSSDLILQHISVESLHGNREQSDRERALENFKTGKVRILIATDLASR 464

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           GLD+ DV HV+N+D P   E Y+HR+GRTGRAGR G + TL+ + D +  + +  ++E+ 
Sbjct: 465 GLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLLTRNDWRVANELINILERA 524

Query: 368 VDWLNGDLSSL 378
              +  DL S+
Sbjct: 525 NQSIPEDLVSM 535


>gi|258622174|ref|ZP_05717200.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM573]
 gi|258585498|gb|EEW10221.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM573]
          Length = 452

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 140/389 (35%), Positives = 213/389 (54%), Gaps = 12/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLSIAGRDLLASSKTGSGKTLAFVLPML 64

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   + PR +IL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 65  HKSLKNKAFSAKDPRGVILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGR+ DH +   L ++ +E LV+DEADRMLD+GF   ++ I +     R 
Sbjct: 125 ARDPKFIVATPGRLADHLDHRSLFLDGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   ++  ++   L  PKRI +   S   + I +H ++  +  +  K ALL+
Sbjct: 185 QTLMFSATLDHADVNDIAMEMLNEPKRIAIGVGSEEHKDITQHFYLCDHLDH--KEALLE 242

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L   +  +  IIF   + +   L   L +      A+ GN++Q  R  I+S F+    
Sbjct: 243 RILADAE-YRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQAQRNTIMSQFERVVF 301

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++V +D+A+RGLDIP V HV NFD+P   E Y+HRIGRTGRAG  G A +LV  +D   
Sbjct: 302 KILVTTDVASRGLDIPTVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAMSLVGPKDWDS 361

Query: 357 IDAIEKLIEKKV-----DWLNGDLSSLNP 380
              +E  +++++     D L G    L P
Sbjct: 362 FKRVEAFLQQEIQFEVLDGLAGKFKGLKP 390


>gi|238784177|ref|ZP_04628190.1| ATP-dependent RNA helicase srmB [Yersinia bercovieri ATCC 43970]
 gi|238714886|gb|EEQ06885.1| ATP-dependent RNA helicase srmB [Yersinia bercovieri ATCC 43970]
          Length = 441

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 137/354 (38%), Positives = 204/354 (57%), Gaps = 4/354 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP L 
Sbjct: 5   NFSELDLDERLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K+  L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I +   + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQT 184

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+  E +++ +E  L+ P  +E +      + I+  +         K ALL  LL
Sbjct: 185 LLFSATLEGEAIREFAERILEEPVELEADPSRRERKKIQQWYYRA-DDIEHKTALLVHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +  K+ IIF   ++ V  L   L + G +   + G + Q  R + +    +G + ++
Sbjct: 244 KQPEVQKS-IIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+A+RGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D
Sbjct: 303 VATDIASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHD 356


>gi|68473179|ref|XP_719395.1| hypothetical protein CaO19.7635 [Candida albicans SC5314]
 gi|74656492|sp|Q5ACK7|DRS1_CANAL RecName: Full=ATP-dependent RNA helicase DRS1
 gi|46441210|gb|EAL00509.1| hypothetical protein CaO19.7635 [Candida albicans SC5314]
 gi|238880416|gb|EEQ44054.1| hypothetical protein CAWG_02313 [Candida albicans WO-1]
          Length = 613

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 144/377 (38%), Positives = 214/377 (56%), Gaps = 14/377 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  L LS  V+  + +  + KPTPIQ  +IP+ L   D+   AQTG+GKT ++++P++  
Sbjct: 132 FQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIER 191

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
           +L K     ++   +IL PTRELA QV +  +K   + N L + L +GG+    Q ++L+
Sbjct: 192 LLYKPSTSTKV---IILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLK 248

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTR 178
              D++I TPGR++DH  N     + +I++LVIDEADRML+ GF   +  I SL+P   R
Sbjct: 249 TRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKR 308

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM   +Q + +  LQ P RI ++ P S A  +   FV    +   K ALL QL
Sbjct: 309 QTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKLLQQFVRIRKRDQLKPALLYQL 368

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+   +    ++F  +K+    L   L   G  V  +HG + Q  R++ + NFK   + +
Sbjct: 369 LKGVSS--RVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSLEVPV 426

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED----- 353
           ++ +DLAARGLDIP +  V N+D+P   E Y+HR+GRT RAGR G + T V +       
Sbjct: 427 LICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESSQERAI 486

Query: 354 IKHIDAIEKLIEKKVDW 370
           +K      K + K VDW
Sbjct: 487 VKSAIVNGKGVAKTVDW 503


>gi|332031410|gb|EGI70923.1| Putative ATP-dependent RNA helicase DDX46 [Acromyrmex echinatior]
          Length = 1013

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 209/363 (57%), Gaps = 7/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G++ K +  +   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 353 WAQCGVTKKELEVLKKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFRH 412

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL++   A    P  LI+ PTREL  Q+  + +K+ K+  L+   + GG     Q  +L+
Sbjct: 413 ILDQPPLADGDGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHVCVYGGTGISEQIAELK 472

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   V   
Sbjct: 473 RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIMENVRPD 532

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT   +++ ++   L  P  ++V   S   + +E   V    +  K   LL+ 
Sbjct: 533 RQTVLFSATFPRQMEALARRILTRPVEVQVGGRSVVCKDVEQ-HVVVLEEDQKFYKLLEI 591

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   QD     IIF ++++N   L   L K  +S  ++HG IDQ  R   + +FK G  +
Sbjct: 592 LGHYQDKGST-IIFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTILDFKAGRTK 650

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  E  ++ 
Sbjct: 651 LLVATSVAARGLDVKHLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITSEQERYA 710

Query: 358 DAI 360
             I
Sbjct: 711 GDI 713


>gi|195130219|ref|XP_002009550.1| GI15175 [Drosophila mojavensis]
 gi|193908000|gb|EDW06867.1| GI15175 [Drosophila mojavensis]
          Length = 1229

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 136/385 (35%), Positives = 218/385 (56%), Gaps = 15/385 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 535 WAQCGVSKKEMDVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRH 594

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G   +     +I+ PTREL  Q+  +  K+ ++  L    + GG     Q 
Sbjct: 595 ILDQPALEDGDGAI----AIIMAPTRELCMQIGKDIRKFSRSLGLRPVCVYGGTGISEQI 650

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 651 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDN 710

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           V   RQT++FSAT   +++ ++   L+ P  + V   S   + +E   V   +  +K   
Sbjct: 711 VRPDRQTVMFSATFPRQMEALARRILKKPVEVIVGGRSVVCKDVEQ-HVVILSDEAKFFK 769

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL+ L   Q+T  + I+F ++++N   L   L K  +   ++HG IDQ  R   + +FK 
Sbjct: 770 LLELLGVYQET-GSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKS 828

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG  G AFT +  E 
Sbjct: 829 GKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGNKGCAFTFITPEQ 888

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL 378
            ++   + + +E     +  DL +L
Sbjct: 889 SRYAGDVIRALELSGTPVPPDLQTL 913


>gi|170058665|ref|XP_001865019.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167877695|gb|EDS41078.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 686

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 137/367 (37%), Positives = 207/367 (56%), Gaps = 4/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL   ++   +  G+ KPT IQ + +P+ +   D+ GIAQTG+GKT ++V P L  
Sbjct: 118 FGDCGLPDYILEETVKQGFTKPTAIQAQGMPIAMTGRDMVGIAQTGSGKTLAYVAPALVH 177

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++      R   P  LIL PTRELA Q+      +G+  N     + GG P   Q + LE
Sbjct: 178 IQHQETVHRGDGPIALILAPTRELAQQIQQVANDFGQRTNTNNTCVFGGAPKGPQIRDLE 237

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA+++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 238 RGAEIVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIMGQIRPDRQV 297

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E++ ++E FL +  +I + + + +A       V     Y K   L++ L +
Sbjct: 298 LMWSATWPKEVRNLAEEFLNDYIQINIGSLNLSANHNILQIVDVCEDYEKDQKLMKLLTE 357

Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S +     I+F   K+ V ++  S+ + G+   +IHG+  Q+ R  +L+ F+ G   ++
Sbjct: 358 ISAEAETKTIVFVETKRRVDDITRSICRNGWRAVSIHGDKSQQERDYVLNAFRNGRQGIL 417

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI-KHID 358
           VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    +  K  D
Sbjct: 418 VATDVAARGLDVEDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTNSNANKAGD 477

Query: 359 AIEKLIE 365
            I  L E
Sbjct: 478 LINVLRE 484


>gi|309973610|gb|ADO96811.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae R2846]
          Length = 418

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 139/372 (37%), Positives = 214/372 (57%), Gaps = 10/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L P V   +   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 14  FSDLSLHPIVRDTLAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 73

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   +        PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 74  LLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAI 133

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P    
Sbjct: 134 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPTPQV 193

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           R T+LFSAT++ ++++++   + +P+ IE+     T   I E  F   Y     K ALL 
Sbjct: 194 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELF---YPSNQDKMALLL 250

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ +   +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G +
Sbjct: 251 TLMEDE-WPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDL 309

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   +
Sbjct: 310 DILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMN 369

Query: 357 IDAIEKLIEKKV 368
           + AIE+ I   +
Sbjct: 370 LPAIEEYIGHSI 381


>gi|301621509|ref|XP_002940090.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Xenopus
           (Silurana) tropicalis]
          Length = 760

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 140/366 (38%), Positives = 207/366 (56%), Gaps = 11/366 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ LS  ++ A+    + +PTPIQ   IP+ L   D+C  A TGTGKTA+F+LP+L  
Sbjct: 185 FQEMNLSRPLLKAISAMSFTQPTPIQKACIPIGLLGKDICACAATGTGKTAAFMLPVLER 244

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L        + R L+L PTREL  QV        +   +T  L +GG+  + Q   L  G
Sbjct: 245 LIYKPREAPVTRVLVLVPTRELGIQVHAVSRLLAQFTEVTTCLAVGGLDVKTQEAALRSG 304

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DVLI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  L    RQTL
Sbjct: 305 PDVLIATPGRLIDHLHNCPSFSLDSIEVLILDEADRMLDEYFEEQMKEIIRLCSHQRQTL 364

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQ 236
           LFSATM++E++ ++   L+NP RI VN+ +  A  +   FV         + +  CALL 
Sbjct: 365 LFSATMSEEVKDLASVSLRNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAVACALLT 424

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +  Q      + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I
Sbjct: 425 RTFQD-----HVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQTQRLESLRRFKDEQI 479

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLDI  V  V N  +P   ++Y+HR+GRT RAG+ G++ +LV +E+ K 
Sbjct: 480 DILVATDVAARGLDIDGVKTVINLTMPGTVKHYVHRVGRTARAGKAGRSVSLVGEEERKM 539

Query: 357 IDAIEK 362
           +  I K
Sbjct: 540 LKEIVK 545


>gi|262273619|ref|ZP_06051433.1| ATP-dependent RNA helicase RhlB [Grimontia hollisae CIP 101886]
 gi|262222597|gb|EEY73908.1| ATP-dependent RNA helicase RhlB [Grimontia hollisae CIP 101886]
          Length = 434

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 213/373 (57%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           FAD GL   V+  + + G+   TPIQ   +P++L   D+ G AQTGTGKT +F+      
Sbjct: 13  FADFGLHADVLKGLEEKGFHNCTPIQALALPVLLTGQDIAGQAQTGTGKTMAFLTATFHH 72

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LT       +   PR +I+ PTRELA Q+ ++      + +LT  L  GG  +E Q   
Sbjct: 73  LLTTEAPADRKKNCPRAIIMAPTRELAIQIYNDAAPLLASTSLTAGLAYGGEAYEKQKDT 132

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176
           LE G D+LI T GRI+D + +  + +  I+ +V+DEADRM D+GFI  I+ +   +P   
Sbjct: 133 LENGVDILIGTCGRIIDFYKQRVIDLRCIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPS 192

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
            R  +LFSAT++  +Q+++   + NP+ + V     T   I E  F   Y     K  LL
Sbjct: 193 ERLNMLFSATLSYRVQELAFEHMTNPEHVVVEPEQKTGHRIKEELF---YPSNKDKMRLL 249

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++  +  I+F N K    ++   L   G     + G++ Q+ R+KIL  F +G+
Sbjct: 250 QTLIE-EEWPERAIVFANTKHRCEDIWGHLAADGLRAGLLTGDVPQKKRVKILEEFTKGS 308

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   
Sbjct: 309 LDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGASISFACEEYAV 368

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE+ I+  +
Sbjct: 369 NLPAIEEYIDHTI 381


>gi|46124501|ref|XP_386804.1| hypothetical protein FG06628.1 [Gibberella zeae PH-1]
 gi|91206590|sp|Q4I830|DRS1_GIBZE RecName: Full=ATP-dependent RNA helicase DRS1
          Length = 796

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 135/362 (37%), Positives = 206/362 (56%), Gaps = 3/362 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  ++  +   G+ KPTPIQ K+IP+ L   DV G A+TG+GKT +F+LP+L  
Sbjct: 258 FQTMSLSRPIMRGLASVGFTKPTPIQAKSIPIALMGKDVVGGAETGSGKTGAFILPILER 317

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     ++   R ++L PTRELA Q      K     ++   L +GG+  +AQ  +L+  
Sbjct: 318 LLYRPKKIPTTRVVVLLPTRELAIQCHAVATKLAAFTDIKFTLAVGGLSLKAQELELKLR 377

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 378 PDVIIATPGRFIDHMRNSASFSVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTM 437

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMT  + ++ +  L  P R+ VN+   T  T+   FV     +  K+   L  + +
Sbjct: 438 LFSATMTSSVDRLIQIGLNRPARVMVNSQKKTVTTLVQEFVRLRPGREDKRMGYLAHVCK 497

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +    +  IIF  QKK+           G S   +HG+++Q  R+  + +F++G +  ++
Sbjct: 498 NL-YKERVIIFFRQKKDAHRARIIFGLLGLSCAELHGSMNQTQRISSVEDFRDGKVAYLL 556

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLDI  V  V N++ P   + Y+HR+GRT RAGR G A T+ A+ D K + A 
Sbjct: 557 ATDLASRGLDIKGVDTVINYEAPQSLDIYVHRVGRTARAGRKGVALTIAAESDRKVVKAA 616

Query: 361 EK 362
            K
Sbjct: 617 VK 618


>gi|194751055|ref|XP_001957842.1| GF23818 [Drosophila ananassae]
 gi|190625124|gb|EDV40648.1| GF23818 [Drosophila ananassae]
          Length = 795

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 134/355 (37%), Positives = 207/355 (58%), Gaps = 7/355 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G    ++ AV  A Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ P+L  
Sbjct: 267 FGHFGFDEPLLKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPLLMH 326

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L  +K       P  LIL PTREL+ Q+ +  +K+GK YNL V    GG     Q+K LE
Sbjct: 327 LMDQKELQPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALE 386

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA++++ TPGR++D        +  +  LV+DEADRM  MGF P +++I + V   RQT
Sbjct: 387 QGAEIVVATPGRMIDMVKMKATNLKRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQT 446

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++++ + L +P RI     +   + I            K   LL  L++
Sbjct: 447 LLFSATFKKRIERLARDVLTDPVRIVQGDLNEANQDITQSVFVFPNPLQKWNWLLCHLVK 506

Query: 241 --SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S+ ++   +IF  +K +   + ++L  + ++   +HG++DQ  R K+++ FK+    +
Sbjct: 507 FLSEGSV---LIFVTKKADAETVANNLLVKEYNCLLLHGDMDQADRNKVITQFKKKECDI 563

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +VA+D+AARGLDIP + +V N+D+    + + HRIGRTGRAG  G AFTLV  +D
Sbjct: 564 LVATDVAARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAFTLVTDKD 618


>gi|119580652|gb|EAW60248.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_h [Homo
           sapiens]
          Length = 547

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 211/374 (56%), Gaps = 19/374 (5%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRAR 69
           ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        LE+G   
Sbjct: 4   LMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDG- 62

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG ++ I T
Sbjct: 63  ---PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIAT 119

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL++SAT   
Sbjct: 120 PGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPK 179

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           E+++++E+FL++  +I V     +A     + ++ C  +   +  K   L+++++  ++ 
Sbjct: 180 EVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMES--EKDHKLIQLMEEIMAEKEN 237

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
               IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   +++A+D+
Sbjct: 238 KT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDV 295

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    + K++
Sbjct: 296 ASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVL 355

Query: 365 EKKVDWLNGDLSSL 378
           E+    +N  L  L
Sbjct: 356 EEANQAINPKLMQL 369


>gi|67528815|ref|XP_662070.1| hypothetical protein AN4466.2 [Aspergillus nidulans FGSC A4]
 gi|40741041|gb|EAA60231.1| hypothetical protein AN4466.2 [Aspergillus nidulans FGSC A4]
          Length = 1526

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 136/361 (37%), Positives = 202/361 (55%), Gaps = 20/361 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 188 FTNPPLDDHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 247

Query: 63  LEK--------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
             +              GR R   P +LIL PTREL +Q+ D   K+     +   ++ G
Sbjct: 248 AYQNGPAAPPPSAAGQFGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYG 307

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ L++DEADRMLDMGF P I+
Sbjct: 308 GADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIR 367

Query: 169 NITSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
            I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I       
Sbjct: 368 RIVEGEDMPNVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQK--VE 425

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
           Y +   K ++L  +L +  T    +IF   K+    L   L  Q F   AIHG+  QR R
Sbjct: 426 YVEDHDKRSVLLDILHTHGTTGLTLIFVETKRMADALSEFLINQRFPATAIHGDRTQRER 485

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G 
Sbjct: 486 ERALEMFRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGI 545

Query: 345 A 345
           A
Sbjct: 546 A 546


>gi|213408188|ref|XP_002174865.1| ATP-dependent RNA helicase drs1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212002912|gb|EEB08572.1| ATP-dependent RNA helicase drs1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 730

 Score =  243 bits (619), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 138/371 (37%), Positives = 215/371 (57%), Gaps = 3/371 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++  +    +  PTPIQ KTIP+ L   D+ G A TG+GKTA+FV+P+L
Sbjct: 231 VSFQDMKLSRPILRGLSSLNFEDPTPIQSKTIPVALLGKDIVGAAVTGSGKTAAFVVPIL 290

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     ++   R LI+ PTRELA Q  +  ++     ++T+ L +GG+  + Q ++L 
Sbjct: 291 ERLVYRPKKIPTSRVLIICPTRELAMQCHNVAKRIAAFTDITLCLCVGGLSLKVQEQELR 350

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  D++I TPGR +DH  N     ++NIEI+VIDEADRML+ GF   +  I  L P +RQ
Sbjct: 351 KRPDIIIATPGRFIDHVRNSQGFSVDNIEIMVIDEADRMLEDGFADELNEIVKLCPKSRQ 410

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCALLQQL 238
           T+LFSATMT+++  +    L  P RI V+   +TA+ +   F+    Q  + + A+L  +
Sbjct: 411 TMLFSATMTEKVDDLVRLSLNRPVRIFVDAKKATAKRLVQEFIRVRPQREQLRPAMLVHI 470

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            ++    +  IIF   K     +       G +   IHG++ Q  R++ L +F++G +  
Sbjct: 471 CKTF-FHRRVIIFFRNKAFAHKMRIIFGLVGLNATEIHGSLSQEQRVRALEDFRDGKVDY 529

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A +LV + D K I 
Sbjct: 530 LLATDVASRGLDIKGVEFVINYEAPASHEIYLHRVGRTARAGRSGRAISLVGENDRKVIK 589

Query: 359 AIEKLIEKKVD 369
            + K  E + D
Sbjct: 590 DVLKSSENQHD 600


>gi|330007678|ref|ZP_08306017.1| ATP-dependent RNA helicase SrmB [Klebsiella sp. MS 92-3]
 gi|328535359|gb|EGF61841.1| ATP-dependent RNA helicase SrmB [Klebsiella sp. MS 92-3]
          Length = 421

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 134/351 (38%), Positives = 201/351 (57%), Gaps = 4/351 (1%)

Query: 18  DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTL 76
           D G+ +PT IQ   IP  L   D+ G A TGTGKTA+++LP L  +L+  R +   PR L
Sbjct: 21  DKGFTRPTAIQAAAIPPALDGRDILGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRIL 80

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           IL PTRELA QVAD+  +  K+ +L +A + GG+ +    +      D+++ T GR+L +
Sbjct: 81  ILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQY 140

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQKVS 195
                     +E L++DEADRMLDMGF   I+ I     + +QT+LFSAT+  D ++  +
Sbjct: 141 IKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQTMLFSATLEGDAIKDFA 200

Query: 196 ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
           E  L+ P  +  N PS+      H +         K  LL  LLQ  +  +  I+F  ++
Sbjct: 201 ERLLEEPVEVSAN-PSTRERKKIHQWYYRADDIEHKTKLLVNLLQQPEATR-AIVFVRKR 258

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           + V  L + L + G + C + G + Q  R + +    +G + +++A+D+AARG+DIPDV 
Sbjct: 259 ERVHELANWLREAGINTCWLEGEMVQAKRNEAIKRLTDGRVNVLIATDVAARGIDIPDVS 318

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           HVFNFD+P  A+ Y+HRIGRTGRAG+ G A +LV   D   +  I + IE+
Sbjct: 319 HVFNFDMPRTADTYLHRIGRTGRAGKKGTAISLVEAHDHLLLGKIGRYIEE 369


>gi|254572992|ref|XP_002493605.1| Essential ATP-dependent RNA helicase of the DEAD-box protein family
           [Pichia pastoris GS115]
 gi|238033404|emb|CAY71426.1| Essential ATP-dependent RNA helicase of the DEAD-box protein family
           [Pichia pastoris GS115]
 gi|328354565|emb|CCA40962.1| ATP-dependent RNA helicase DDX5/DBP2 [Pichia pastoris CBS 7435]
          Length = 537

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 133/383 (34%), Positives = 209/383 (54%), Gaps = 11/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+ AV   G+  PT IQ +  P+ L   D+ GIA TG+GKT S+ LP +  
Sbjct: 102 FDEAGFPDYVLTAVKAQGFPSPTAIQCQGWPMALGGKDMVGIAATGSGKTLSYCLPAIVH 161

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L+ G      P  L+L PTRELA Q+     K+G +  +    + GG+P   Q 
Sbjct: 162 INAQPLLKPGDG----PVALVLAPTRELAVQIQKECSKFGSSSRIRNTCVYGGVPKGQQI 217

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RGA+++I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 218 RDLARGAEIVIATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 277

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT    +Q ++ ++L +  ++ V +    A       +   ++Y K+  L +
Sbjct: 278 DRQTLMWSATWPKSVQALARDYLHDYIQVNVGSLELAASHNIKQVIEVLSEYEKRDRLTK 337

Query: 237 QLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L Q S+D     ++F + K+    L   L   G+   AIHG+ +QR R  +L  F+ G 
Sbjct: 338 YLEQASEDKTSKILVFASTKRTCDELTTYLRSDGWPALAIHGDKEQRERDWVLQEFRSGK 397

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+AARG+D+  +  V N+D+P   E+Y+HRIGRTGRAG  G A +     + +
Sbjct: 398 SPIMVATDVAARGIDVKGINFVVNYDMPGNIEDYVHRIGRTGRAGATGTAVSFFTNANAR 457

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
             D +  ++++    +  DL ++
Sbjct: 458 MADDLVPILKEANQIIPEDLQAM 480


>gi|260063169|ref|YP_003196249.1| ATP-dependent RNA helicase [Robiginitalea biformata HTCC2501]
 gi|88783263|gb|EAR14435.1| ATP-dependent RNA helicase [Robiginitalea biformata HTCC2501]
          Length = 579

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 126/354 (35%), Positives = 213/354 (60%), Gaps = 8/354 (2%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMP 73
           AV   G+V+PT +Q++TIPL+L    D+  +AQTGTGKTA+F LP+L   EK  +  R  
Sbjct: 3   AVDALGFVQPTGVQLETIPLLLGPETDLVALAQTGTGKTAAFGLPLL---EKTDSASRKS 59

Query: 74  RTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
           + LIL PTREL  Q+    + Y K    L++  + GG   + Q K L+ G  +++ TPGR
Sbjct: 60  QALILAPTRELCLQITSELQAYAKFIKGLSIVAVYGGASIQQQAKALKNGGQIIVATPGR 119

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           + D  +R    +++I   V+DEAD ML+MGF   + +I S  P  + T LFSATM + + 
Sbjct: 120 MKDMISRKLADISSIGYCVLDEADEMLNMGFYEDLVDILSHAPKDKSTWLFSATMPNAVA 179

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           +++ +F+  P  + V T +    +++H +     +   +   L++L  +   + + +IFC
Sbjct: 180 RIARDFMHQPAEVTVGTRNEAIASVQHEYYTVAGR--DRYPALRRLADANPGLFS-VIFC 236

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             K++   +   L + G++  A+HG++ Q+ R  +++ F++  +QL+VA+D+AARG+D+ 
Sbjct: 237 RTKRDTQKVAEKLIEDGYNAGALHGDLSQQQRDLVMNAFRKRQLQLLVATDVAARGIDVD 296

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           DV HV ++ +P+  E Y HR GRTGRAG+ G +  ++ + + + I AIEK+I +
Sbjct: 297 DVTHVIHYQLPDETETYTHRSGRTGRAGKSGVSMVILTRSEQRRIRAIEKIIGR 350


>gi|307309898|ref|ZP_07589548.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|306909616|gb|EFN40110.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|315060597|gb|ADT74924.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           W]
 gi|323378840|gb|ADX51108.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11]
          Length = 457

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 218/377 (57%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W     +S   PLE
Sbjct: 363 KLNWQTPPANSSILPLE 379


>gi|110641577|ref|YP_669307.1| ATP-dependent RNA helicase DbpA [Escherichia coli 536]
 gi|110343169|gb|ABG69406.1| ATP-independent RNA helicase DbpA [Escherichia coli 536]
          Length = 457

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 133/352 (37%), Positives = 209/352 (59%), Gaps = 8/352 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   A +   + L+L 
Sbjct: 22  GYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID---ASLFQTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF  Q   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT  + +  +S   
Sbjct: 139 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFAPASRQTLLFSATWPEAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     + ++FCN KK+ 
Sbjct: 199 QRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPSSCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            ++C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ K++W
Sbjct: 315 NFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNW 366


>gi|118374919|ref|XP_001020647.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89302414|gb|EAS00402.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 396

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 132/376 (35%), Positives = 209/376 (55%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +L  G+ KP+ +Q + I  +++  DV   +Q GTGKT  F +  L I
Sbjct: 25  FEKMGLKEELLRGILTYGFDKPSAVQQRAIKPIIKGRDVIVQSQAGTGKTGVFTIAALQI 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++K    +R P+ ++L PTRELA Q        G   N+ V   IGG   +    +LE+G
Sbjct: 85  VDKN---LREPQVIVLSPTRELAEQTQKVCLALGDYMNILVHCCIGGKSMDDDINRLEKG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGRI D   R  L   N+++LV+DEAD+ML MGF   + +I   +P   Q ++
Sbjct: 142 VQIISGTPGRIYDMIQRRHLKTRNVKMLVLDEADQMLSMGFKEQVYDIYRYLPHKNQNVV 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  E+ +++  F+ +P +  V     T E I+  F+    +  K   L    L + 
Sbjct: 202 VSATLPQEILEMTNKFMNDPIKFLVKRDELTLEGIKQFFILVEKEEWKFETLCD--LYNT 259

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN  K V  L   + +Q FS+C+IHG ++Q+ R KI+ +F+ G  +++VA+
Sbjct: 260 ITITQAVIFCNTIKAVKWLSGKMREQNFSLCSIHGELNQKERDKIMQDFRNGEYRVLVAT 319

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+  RGLD+  V  V N+D+P   E YIHRIGR+GR GR G A   V  ED+  +  IE+
Sbjct: 320 DIWGRGLDVQQVSVVINYDLPTNRELYIHRIGRSGRFGRKGVAINFVKNEDVSALRDIEQ 379

Query: 363 LIEKKVDWLNGDLSSL 378
               ++D +  ++S L
Sbjct: 380 YYSTQIDEMPYNVSEL 395


>gi|332025289|gb|EGI65460.1| Putative ATP-dependent RNA helicase DDX17 [Acromyrmex echinatior]
          Length = 706

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 139/385 (36%), Positives = 215/385 (55%), Gaps = 15/385 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F +      V+  +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP  + 
Sbjct: 109 FEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPATVH 168

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I  + R +R   P  LIL PTRELA Q+      +G +  +    + GG P   Q + LE
Sbjct: 169 INHQPRLSRGDGPIVLILAPTRELAQQIQTVARDFGSSSCIRNTCIFGGSPKGPQARDLE 228

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 229 RGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 288

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALL 235
           L++SAT   E+Q ++E+FL +  +I + + +  A     + +E C      Q  +K   L
Sbjct: 289 LMWSATWPKEVQALAEDFLSDYIQINIGSLTLAANHNIRQIVEIC------QEHEKEMKL 342

Query: 236 QQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            QLL+   T +    IIF   KK V ++  +++++G+S  +IHG+  Q  R  +LS F+ 
Sbjct: 343 SQLLREIGTERGSKMIIFVETKKKVDDITKTIKREGWSAISIHGDKSQPERDYVLSEFRN 402

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+D+AARGLD+ DV +V NFD PN +E+YIHRIGRTGR    G A+      +
Sbjct: 403 GKTMILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNN 462

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL 378
            +    +  ++E+    +N  L+ +
Sbjct: 463 ARQAKELIAVLEEAGQAINPQLADM 487


>gi|162459683|ref|NP_001105241.1| DEAD box RNA helicase1 [Zea mays]
 gi|39653663|gb|AAR29370.1| DEAD box RNA helicase [Zea mays]
          Length = 566

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 204/370 (55%), Gaps = 18/370 (4%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRARVRM 72
           +G+V+PTPIQ +  P+ L+  D+ GIAQTG+GKT S++LP L        LE+G      
Sbjct: 169 SGFVEPTPIQSQGWPM-LKGRDLIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQGDG---- 223

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
           P  LIL PTRELA Q+ +   K+G         + GG P   Q + L RG +++I TPGR
Sbjct: 224 PIVLILAPTRELAVQIQEESTKFGSYSRTRSTCVYGGAPKGPQIRDLRRGVEIVIATPGR 283

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           ++D    G   +  +  LV+DEADRMLDMGF P I+ I + +   RQTL +SAT   E++
Sbjct: 284 LIDMLEAGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWPREVE 343

Query: 193 KVSENFLQNPKRIEVNTPSSTA-ETIEHC--FVATYAQYSKKCALLQQLLQSQDTMKNGI 249
            ++  FLQNP ++ + +P   A  +I+     ++ +        LL  L+     +    
Sbjct: 344 ALARQFLQNPYKVIIGSPELKANHSIQQIVEVISDHESIQDSVKLLSDLMDGSRIL---- 399

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           IF   KK+   +   L   G+   +IHG+  Q  R  +L+ FK G   +M A+D+AARGL
Sbjct: 400 IFLQTKKDCDKITRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDVAARGL 459

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           D+ D+  V N+D P   E+YIHRIGRTGRAG  G AFT     + K    + K++ +   
Sbjct: 460 DVKDIKCVINYDFPTTLEDYIHRIGRTGRAGASGTAFTFFTHANAKFSRNLVKILREAGQ 519

Query: 370 WLNGDLSSLN 379
            +N  L S++
Sbjct: 520 VVNPALESMS 529


>gi|330502250|ref|YP_004379119.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
 gi|328916536|gb|AEB57367.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
          Length = 441

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 210/370 (56%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA   L  +++ AV +  +V+PTP+Q   IP  L+  D+  IAQTG+GKTA+FVLP+L  
Sbjct: 2   FAQFALHERLLKAVAELNFVEPTPVQAAAIPPALEGKDLRVIAQTGSGKTAAFVLPLLNR 61

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L  G ++ R+  R LIL PTRELA Q     E++ +   L   L+ GG  F+ Q   + 
Sbjct: 62  LLGDGNSKQRLSIRALILLPTRELAQQTLKEVERFAQFTFLKAGLVTGGEDFKVQAAMM- 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R  D+LI TPGR+++H N G L ++ +E+LV DEADRMLDMGF    Q +        QT
Sbjct: 121 RKIDILIGTPGRLIEHANAGNLPLDEVEVLVFDEADRMLDMGFAEDAQRLAEACG-PHQT 179

Query: 181 LLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT   + L+++    L+ P+ + +N+ S   E      +     Y K+   L   L
Sbjct: 180 LLFSATTGGNGLREMVAKVLKEPQHLMLNSVSQLNEGTRQQIITADHNYHKEQ--LVDWL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +T    I+F N +     L   L   G     +HG  DQ+ R   +   ++G ++++
Sbjct: 238 LANETYDKAIVFTNTRVQADRLYGKLVAAGVKAFVLHGEKDQKDRKLAIERLRQGAVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + +
Sbjct: 298 VATDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGGEGLAVSLICHTDWNLMSS 357

Query: 360 IEKLIEKKVD 369
           IE+ ++++ +
Sbjct: 358 IERYLKQRFE 367


>gi|269959250|ref|ZP_06173634.1| ATP-dependent RNA helicase, DEAD box family [Vibrio harveyi 1DA3]
 gi|269835952|gb|EEZ90027.1| ATP-dependent RNA helicase, DEAD box family [Vibrio harveyi 1DA3]
          Length = 436

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 141/368 (38%), Positives = 210/368 (57%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS +++ A L   + KPT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 25  MPFSTLSLSSELIHA-LPKDFKKPTDIQALAIPELLSGKDVLALANTGSGKTLAYGLPLL 83

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +    + LIL PTRELA QV++   + G+   L    L GG+  E Q + L 
Sbjct: 84  EKLSVNPEQ----KALILVPTRELATQVSEAINQVGQAIGLNAVCLCGGVDKETQLQALA 139

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ T GR++D  N G L ++NI  LV+DEADR+LDMGF P +QNI   +   RQT
Sbjct: 140 SDPHILVATTGRLVDLANNG-LDLSNIHYLVLDEADRLLDMGFWPDVQNIAGQISNQRQT 198

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT +DEL+  ++  +  PK++  +  +ST + I         + SK  AL++  L 
Sbjct: 199 AMFSATFSDELKGKAKQLMHAPKQVAAHQENSTNQDIAETLYLVN-KGSKTKALIE--LI 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+T    ++F   K+N   L   L K G +  A+HGN  Q  R + L+ FK G  Q+++
Sbjct: 256 KQNTWTQVLVFIGAKENADGLAKKLNKAGITTNALHGNKSQVEREEALAQFKSGQTQVLI 315

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG  G A +LV   + + + AI
Sbjct: 316 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVAMSLVCHGEAEALTAI 375

Query: 361 EKLIEKKV 368
             L ++++
Sbjct: 376 RNLTQREL 383


>gi|193573502|ref|XP_001943796.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Acyrthosiphon
           pisum]
          Length = 737

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 137/353 (38%), Positives = 205/353 (58%), Gaps = 4/353 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA       ++  +  + YV+PTPIQ + +P  L   D+ GIA+TG+GKT +F+ PML  
Sbjct: 244 FAHFNFDDALMKIIRKSDYVQPTPIQSQAVPAALAGRDIIGIAKTGSGKTLAFIWPMLVH 303

Query: 62  ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++   +    P  LIL PTREL+ Q+    +K+GK YNL V    GG     Q+K LE
Sbjct: 304 IMDQPELKEGDGPVGLILAPTRELSQQIYVEAKKFGKIYNLRVVCCYGGGSKWEQSKALE 363

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA++++ TPGR++D        +  +  LV+DEADRM +MGF P +++I   V   RQT
Sbjct: 364 GGAEIIVGTPGRVIDLVKMSATNLTRVTFLVLDEADRMFNMGFEPQVRSICDHVRPDRQT 423

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT   +++K++ + L +P RI V      A T     +    Q  K   LL  L+Q
Sbjct: 424 LLFSATFKKKIEKLARDILTDPIRI-VQGDVGEANTDVAQIMLVMPQSDKCQWLLDNLVQ 482

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T  + ++F  +K +   L  +L  + + V  +HG++DQ  R K+++ FK+  + +MV
Sbjct: 483 FTST-GSILVFVTKKLDAEQLASTLSLKEYEVLLLHGDMDQAERNKVITKFKKQEVNIMV 541

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           A+D+AARGLDI  +  V N+D+    + + HRIGRTGRAG  G AFTLV  +D
Sbjct: 542 ATDVAARGLDIAHIRTVVNYDIARDIDTHTHRIGRTGRAGEKGTAFTLVTPKD 594


>gi|54310595|ref|YP_131615.1| ATP-dependent RNA helicase RhlB [Photobacterium profundum SS9]
 gi|56749602|sp|Q6LLL5|RHLB_PHOPR RecName: Full=ATP-dependent RNA helicase rhlB
 gi|46915038|emb|CAG21813.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Photobacterium
           profundum SS9]
          Length = 437

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 135/372 (36%), Positives = 210/372 (56%), Gaps = 9/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL P V+  +   G+   TPIQ   +P+VL   D+ G AQTGTGKT +F+      
Sbjct: 11  FADLGLEPTVLEGLDAQGFHYCTPIQALALPVVLTGQDIAGQAQTGTGKTLAFLTATFNY 70

Query: 63  L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L         +   PR +I+ PTRELA Q+ ++      +  L   L  GG  +E Q K 
Sbjct: 71  LLLNPASDERKTNQPRAIIMAPTRELAIQIYNDAAPLLASTGLKAGLAYGGEAYEKQQKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-- 176
              G D+LI T GRI+D + +  + + +I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 FAEGVDILIGTCGRIIDFYKQRVIDLASIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPK 190

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R  +LFSAT++  +++++   + +P+ + V     T   I+      Y    +K  LLQ
Sbjct: 191 ARLNMLFSATLSYRVKELAFEHMNSPESVVVEPNQKTGHLIQEELF--YPSNQEKMRLLQ 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ ++     IIF N K    ++   L      V  ++G++ Q+ R++IL  F +G I
Sbjct: 249 TLIE-EEWPDRAIIFANTKHRCEDIWGHLAADNHRVGLLNGDVPQKKRVRILEQFTQGDI 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL IP V HV+N+D+P+ AE+Y+HRIGRTGRAG  G + +   +E   +
Sbjct: 308 DILVATDVAARGLHIPQVTHVYNYDLPDDAEDYVHRIGRTGRAGESGSSISFACEEYAIN 367

Query: 357 IDAIEKLIEKKV 368
           + AIE  IE  +
Sbjct: 368 LPAIETYIEHPI 379


>gi|313887420|ref|ZP_07821109.1| putative ATP-dependent RNA helicase RhlE [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332299626|ref|YP_004441547.1| DEAD/DEAH box helicase domain protein [Porphyromonas
           asaccharolytica DSM 20707]
 gi|312923062|gb|EFR33882.1| putative ATP-dependent RNA helicase RhlE [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332176689|gb|AEE12379.1| DEAD/DEAH box helicase domain protein [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 438

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 137/380 (36%), Positives = 221/380 (58%), Gaps = 22/380 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF +L L  +V+  +    +V+ +PIQ +TIP +L+  DV G AQTG+GKTA+++LP L
Sbjct: 1   MDFYELDLEDEVLDGLDAMNFVETSPIQSETIPPLLEGRDVIGCAQTGSGKTAAYLLPFL 60

Query: 61  TILEKGRARVRMPR----TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFE 113
             +    AR  +P+     +++ PTRELA Q+    E +G   +++   + GG   I +E
Sbjct: 61  NKV----ARQELPKEHLGAVVMAPTRELAKQIDQEVEGFGYYVSVSTLAIYGGTDGIAWE 116

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + +  GAD++I TPGR+L     G   +++++  V+DEADRMLDMGF   I  I   
Sbjct: 117 QQRRGMALGADIVIATPGRLLSMLRLGACDLSHVQYFVLDEADRMLDMGFYEDIMEIYKA 176

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT---PSSTAETIEHCFVATYAQYSK 230
           +P   Q ++FSATM  E+ K+SE+ L +P  +E+     P S  +T   C+ A      +
Sbjct: 177 LPEDCQHVMFSATMPKEILKLSESILVDPVLVELAVAKPPKSIMQTAYICYDA------Q 230

Query: 231 KCALLQQLLQSQDT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K  +++ L  + ++ +   IIF   K  V  L  +L + G  V  +H ++ Q  R ++L 
Sbjct: 231 KLPIIRSLFTNPESEVSRTIIFAGTKATVHALAQTLSRDGLPVAEMHSDLSQERREEVLR 290

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTL 348
           +F+ G I+++VA+D+ ARG+DI D+  V N++VP   E+Y+HRIGRT R A   G A TL
Sbjct: 291 DFRMGRIKVLVATDIVARGIDIDDIAVVINYEVPRDFEDYVHRIGRTARGADGKGLAITL 350

Query: 349 VAKEDIKHIDAIEKLIEKKV 368
           V+  D +    +E  +E+++
Sbjct: 351 VSPSDQQDFARLEHFLEQEI 370


>gi|160899925|ref|YP_001565507.1| DEAD/DEAH box helicase domain-containing protein [Delftia
           acidovorans SPH-1]
 gi|160365509|gb|ABX37122.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
          Length = 481

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 137/369 (37%), Positives = 212/369 (57%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LSP  +  +   GY++ T IQ+ ++P  L+  DV   A+TG+GKTA+F L +L  
Sbjct: 26  FDKLALSPATLANLERLGYLEMTAIQLASLPPALEGKDVIAQAKTGSGKTAAFALALLAK 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+     V+    L+L PTRELA QV     +  +   N+ V  L GG+P   QN  LE 
Sbjct: 86  LDTRNFSVQ---GLVLCPTRELADQVTTEIRRLARAEDNVKVVTLSGGVPLRGQNASLEN 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH +RG L ++++  LV+DEADRMLDMGF+  I  +    P  RQTL
Sbjct: 143 GAHVIVGTPGRVIDHLDRGNLNLDSLNTLVLDEADRMLDMGFVDDIAKVAKQCPPQRQTL 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K++  F+++P  ++V    S  +  +  +     +     A L +  + 
Sbjct: 203 LFSATYPEGIAKLAARFMRDPVTVKVAAQHSGEQIEQRWYEVDKEERLPSVARLLEHFRP 262

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T+     FCN K     L   L+ QG+S   +HG+++QR R ++L  F  G+  ++VA
Sbjct: 263 ESTLA----FCNTKARCRALAELLQAQGYSALELHGDLEQRDRDQVLVRFVNGSCSVLVA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++G V N D+    E ++HRIGRTGRAG+ G A +L   +++  +  IE
Sbjct: 319 TDVAARGLDVTNLGAVINVDITPDPEVHVHRIGRTGRAGQKGLALSLATMDEMGAVGNIE 378

Query: 362 KLIEKKVDW 370
           ++      W
Sbjct: 379 QMQGSPSVW 387


>gi|45219880|gb|AAH66938.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Homo sapiens]
          Length = 648

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 138/361 (38%), Positives = 212/361 (58%), Gaps = 7/361 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---MLTILEKG 66
           P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT  +++P    L +    
Sbjct: 251 PEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSL 310

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           + +   P  L+L PTRELA QV     KY     L    + GG   + Q ++L++G D++
Sbjct: 311 KGQRNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIEELKKGVDII 369

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + NI  LV+DEAD+MLDMGF P I  I   V   RQT++ SAT
Sbjct: 370 IATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSAT 429

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
               + ++++++L+ P  + V T    A  +++   + T  +  +K + +Q  LQS  + 
Sbjct: 430 WPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEE--EKWSHMQTFLQSMSST 487

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F ++K    +L   L     SV ++HG+ +QR R K L NFK G +++++A+DLA
Sbjct: 488 DKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDLA 547

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLD+ DV HV+NFD P   E Y+HRIGRTGRAGR G + T + + D +    +  ++E
Sbjct: 548 SRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINILE 607

Query: 366 K 366
           +
Sbjct: 608 R 608


>gi|82544201|ref|YP_408148.1| ATP-dependent RNA helicase DbpA [Shigella boydii Sb227]
 gi|81245612|gb|ABB66320.1| ATP-dependent RNA helicase [Shigella boydii Sb227]
 gi|320174309|gb|EFW49464.1| ATP-dependent RNA helicase DbpA [Shigella dysenteriae CDC 74-1112]
 gi|332094952|gb|EGI99992.1| ATP-independent RNA helicase dbpA [Shigella boydii 3594-74]
          Length = 457

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 218/377 (57%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAVISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W     +S   PLE
Sbjct: 363 KLNWQTPPANSSIVPLE 379


>gi|74312285|ref|YP_310704.1| ATP-dependent RNA helicase DbpA [Shigella sonnei Ss046]
 gi|73855762|gb|AAZ88469.1| ATP-dependent RNA helicase [Shigella sonnei Ss046]
 gi|323168225|gb|EFZ53911.1| ATP-independent RNA helicase dbpA [Shigella sonnei 53G]
          Length = 457

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 218/377 (57%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAVISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W     +S   PLE
Sbjct: 363 KLNWQTPPANSSIVPLE 379


>gi|330929272|ref|XP_003302577.1| hypothetical protein PTT_14452 [Pyrenophora teres f. teres 0-1]
 gi|311321983|gb|EFQ89342.1| hypothetical protein PTT_14452 [Pyrenophora teres f. teres 0-1]
          Length = 599

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 139/378 (36%), Positives = 214/378 (56%), Gaps = 20/378 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK------------- 65
           +GY  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L    +             
Sbjct: 214 SGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQAFQNGPSPPPQQAQGG 273

Query: 66  -GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
            GR R   P +L+L PTREL +Q+ D   K+     +   ++ GG    +Q +++ERG D
Sbjct: 274 YGRQRKAYPTSLVLAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 333

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--VPFT--RQT 180
           +L+ TPGR++D   RG++ + +I+ LV+DEADRMLDMGF P I+ I     +P T  RQT
Sbjct: 334 LLVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPTAGRQT 393

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT   ++Q ++ +FL++   + V    ST+E I       Y +   K ++L  +L 
Sbjct: 394 LMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKI--EYVEDVDKRSVLLDILH 451

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D     ++F   K+   +L   L  QGF   +IHG+  QR R K L  F+ G   ++V
Sbjct: 452 THDPTNLTLVFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRNGRCPILV 511

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+ +AARGLDIP V HV N+D+P   ++Y+HRIGRTGRAG  G A     + +   +  +
Sbjct: 512 ATAVAARGLDIPHVKHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDL 571

Query: 361 EKLIEKKVDWLNGDLSSL 378
            +L+++    + G L S+
Sbjct: 572 LELLKEANQEVPGFLESI 589


>gi|317049189|ref|YP_004116837.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp.
           At-9b]
 gi|316950806|gb|ADU70281.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
          Length = 442

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 131/353 (37%), Positives = 201/353 (56%), Gaps = 4/353 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F++L L   ++ A+ + G+ +PT IQ + IP  L+  DV G A TGTGKTA+++LP M  
Sbjct: 6   FSELELDESLLDALQEKGFTRPTAIQAEAIPAALEGRDVLGSAPTGTGKTAAYLLPAMQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++  R +   PR LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +    
Sbjct: 66  LIDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I     + +QTL
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQTL 185

Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  D ++  +E  L +P  +E +      + I+  +         K  LL  LL+
Sbjct: 186 LFSATLEGDNIKDFAERLLNDPVAVEADPSQRERKKIQQWYYRA-DDLEHKTKLLVHLLK 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   I+F  +++ +  L   L + G     + G + Q  R + L    +G + ++V
Sbjct: 245 -QPEVTRSIVFVRKRERLHELVTWLHEAGIRCSYLEGEMVQAKRNEALKRLNDGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           A+D+AARG+DI DV HVFN+D+P  A+ Y+HRIGRT RAGR G A +LV   D
Sbjct: 304 ATDVAARGIDIEDVSHVFNYDMPRTADIYLHRIGRTARAGRKGIALSLVEAHD 356


>gi|84624218|ref|YP_451590.1| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|161898981|ref|YP_201355.2| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188576177|ref|YP_001913106.1| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|84368158|dbj|BAE69316.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188520629|gb|ACD58574.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 458

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 143/383 (37%), Positives = 213/383 (55%), Gaps = 13/383 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ L LSP +   +   GY   TP+Q +++P +L+  DV   A TG+GKTA+F L +L 
Sbjct: 3   EFSALPLSPALAPGIDALGYTVLTPVQAQSLPPILRGLDVIAQAPTGSGKTAAFGLGLLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+    R +    L+L PTRELA QV     K      N+ + +L GG+P   Q   LE
Sbjct: 63  KLDPALTRAQ---ALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 119

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I S     RQ
Sbjct: 120 AHDPHVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA--TYAQYSKKCALLQQ 237
           +LLFSAT  D ++ ++   L++P  I V    +  E  +  F    TY Q +    LL+ 
Sbjct: 180 SLLFSATFPDIIRTLAREILKDPIEITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLLRF 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                 T ++ ++FCN +K V  +  SL++ GFS  A+HG+++QR R ++L  F   +  
Sbjct: 240 ------TPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCN 293

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+HG A +LVA  +    
Sbjct: 294 VLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARA 353

Query: 358 DAIEKLIEKKVDWLNGDLSSLNP 380
            A+E    + + W    L++  P
Sbjct: 354 QALEAEQGQPLKWSRAPLATARP 376


>gi|193068305|ref|ZP_03049268.1| ATP-dependent RNA helicase SrmB [Escherichia coli E110019]
 gi|192958257|gb|EDV88697.1| ATP-dependent RNA helicase SrmB [Escherichia coli E110019]
          Length = 444

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 137/356 (38%), Positives = 205/356 (57%), Gaps = 4/356 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73
           A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  +L+  R +   P
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +      D+++ T GR+
Sbjct: 78  RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQ 192
           L +          +E L++DEADRMLDMGF   I++I     + +QTLLFSAT+  D +Q
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
             +E  L++P  +  N PS+      H +         K ALL  LL+  +  ++ I+F 
Sbjct: 198 DFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFV 255

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
            +++ V  L + L + G +   + G + Q  R + +    EG + ++VA+D+AARG+DIP
Sbjct: 256 RKRERVHELANWLREAGINNSYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           DV HVFNFD+P   + Y+HRIGRT RAGR G A +LV   D   +  + + IE+ +
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371


>gi|317470864|ref|ZP_07930245.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
 gi|316901691|gb|EFV23624.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
          Length = 478

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 132/381 (34%), Positives = 215/381 (56%), Gaps = 13/381 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D GLS +++ A+   GY KPT IQ + IP +L   ++   A TG+GKTA+F +P   
Sbjct: 4   EFQDFGLSIEILEALNGLGYKKPTNIQQEVIPPMLAGKNIVAKAPTGSGKTAAFAIP--- 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I +  R     P+ L+LEP RELA QV+      G+   L V  + GG P + Q + L++
Sbjct: 61  ICQNVRWEENAPQALVLEPARELAVQVSQEMFHIGRKKRLKVPAVFGGFPIDKQIRTLKQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + ++  TPGR++DH  R  L ++N++ LVIDEAD MLDMGFI  ++ I SLVP   +  
Sbjct: 121 KSHIVAGTPGRVMDHIRRETLKLSNVQWLVIDEADLMLDMGFIDEVKQILSLVPADCRIS 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  E++++++ F+  P+ + V   +   +         +A   +K      +L  
Sbjct: 181 LFSATLKPEIRELADGFI--PEAVLVMQEAGEEQASAITEKLYFASQERKYDTFLDILMD 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++  ++ +IFC  ++    L   L ++      +HG+++QR R+K +  F+ G  + ++A
Sbjct: 239 ENP-QSCMIFCGTREMTNVLFQKLRRKRIFCGMLHGDMEQRERLKTVDAFRRGGFRFLIA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D  ++ HV N+D P   E Y+HRIGRTGR G  G A +LV + D + +  +E
Sbjct: 298 TDVAARGIDFEEISHVVNYDFPTGKETYVHRIGRTGRNGNSGTAVSLVTENDQRMLKQVE 357

Query: 362 KLIEKKVDWLNGDLSSLNPPL 382
                   +L  +L    PP+
Sbjct: 358 T-------YLGRELPVTEPPV 371


>gi|306821005|ref|ZP_07454624.1| ATP-dependent RNA helicase DbpA [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550946|gb|EFM38918.1| ATP-dependent RNA helicase DbpA [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 387

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 130/359 (36%), Positives = 208/359 (57%), Gaps = 6/359 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DL +  ++V  +       PT IQ + IP++L++ ++   AQTGTGKT +F+LP++T
Sbjct: 3   EFKDLKIKAELVSQLSKLRISTPTQIQEEAIPIILKKRNLIAKAQTGTGKTLAFLLPIMT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           + ++    +R+P+T+IL PTREL+ Q    F+    +  L+ A ++GG  F+ Q  K   
Sbjct: 63  MTDEN---LRLPQTVILSPTRELSNQTKKVFDDLNVDKKLSCANIVGGHDFKKQENKFVS 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + +++ TPGR+L+H   G + M +I   +IDEAD+ML+ GF+  I  +   +P   Q +
Sbjct: 120 NSQIIVATPGRLLEHIRSGNINMKHISRFIIDEADQMLEYGFLEDIVLLKDKLPDKLQIV 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM   +  +++  ++NP +I+V    +  E IE     T  ++  K   L+ +L+ 
Sbjct: 180 LLSATMPKPIIDLAKKLMKNPVKIDVTKEKTVTENIEQILFHTTEKF--KNDTLKFVLEE 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFCN KKN   L   +   G+    IHG+  Q+ R  IL+ F++   Q +V+
Sbjct: 238 YRPFM-SIIFCNSKKNAEKLNEYMSISGYDCDIIHGDFSQKKREHILNEFRKMKFQYLVS 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +DL+ARG DI  V HV N++VP     YIHRIGRTGRA + G A +L+ ++D K I+ I
Sbjct: 297 TDLSARGFDIDGVTHVINYEVPTDYNYYIHRIGRTGRAEKTGIAISLIDEKDEKKIEKI 355


>gi|270264230|ref|ZP_06192497.1| putative ATP-dependent RNA helicase [Serratia odorifera 4Rx13]
 gi|270041879|gb|EFA14976.1| putative ATP-dependent RNA helicase [Serratia odorifera 4Rx13]
          Length = 429

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 137/365 (37%), Positives = 210/365 (57%), Gaps = 9/365 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P V+ A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPLVLEALEKKGFHHCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY 70

Query: 63  LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A+       PR LI+ PTRELA Q+  + E   ++  L + L  GG  ++ Q K 
Sbjct: 71  LLSNPAKQDRQTNQPRALIMAPTRELAVQIHSDAEALSQSTGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILVGTTGRLIDYAKQNYIDLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAVD 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           Q L  LFSAT++  +++++   + N + +EV     T   I+      Y    +K  LLQ
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIQEELF--YPSNEEKMRLLQ 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G +
Sbjct: 249 TLIE-EEWPDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGNL 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   +
Sbjct: 308 DILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALN 367

Query: 357 IDAIE 361
           + AIE
Sbjct: 368 LPAIE 372


>gi|294900795|ref|XP_002777119.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
           50983]
 gi|239884576|gb|EER08935.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
           50983]
          Length = 967

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 143/390 (36%), Positives = 216/390 (55%), Gaps = 32/390 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  +  A+   GY +PTPIQ K IP +L   DV  +A+TG+GKTA+FV+PM+ I
Sbjct: 33  FQTMGLSDPLFKAIQKMGYNQPTPIQRKAIPAILGGSDVVAMARTGSGKTAAFVIPMIQI 92

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L KG + V   R +IL PTRELA Q        GK  +L + L++GG   E+Q  +L   
Sbjct: 93  L-KGHSEVVGARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVGGHSMESQFDRLSSN 151

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLICTPGR++ H     L +  ++ +V DEADR+ +MGF   +Q+I    P +RQ LL
Sbjct: 152 PDVLICTPGRLVHHMVEADLSLQRVQYIVFDEADRLFEMGFADDMQSILKATPPSRQCLL 211

Query: 183 FSATMTDELQKVSENFL--QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL-- 238
           FSAT+  +L + S   L  ++ + I ++   + ++T++  F+ T A  SK  AL+  L  
Sbjct: 212 FSATLPSQLTQFSRAGLRSESTEFIRLDVEHTISDTLDLWFLYTTAD-SKPAALVALLRK 270

Query: 239 LQSQDTMKNG------------------------IIFCNQKKNVVNLCHSLEKQGFSVCA 274
           LQS      G                        I+F   + NV      L + G S   
Sbjct: 271 LQSMGNKSTGDATGVAGVEGKSKGGKKGARSSKTIVFVATRHNVEFFASLLTQVGISNAP 330

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           I+G++DQ  R   LS F+ G   +++ +D+AARG+DIP + +V N+D P+ ++ ++HR G
Sbjct: 331 IYGSMDQTQRTSSLSKFRSGKASVLLVTDVAARGIDIPQLDYVINYDFPSSSKLFVHRCG 390

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RT RAG  G   +LV  +D+ +  A+E ++
Sbjct: 391 RTARAGAKGLCASLVTHDDMPY--AVELML 418


>gi|123441353|ref|YP_001005340.1| ATP-dependent RNA helicase SrmB [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088314|emb|CAL11105.1| ATP-dependent RNA helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 441

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 138/354 (38%), Positives = 204/354 (57%), Gaps = 4/354 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L L  ++V A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP L 
Sbjct: 5   NFSELDLDERLVDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K+  L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I++   + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQT 184

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+  E +++ +E  L  P  +E +      + I+  +         K ALL  LL
Sbjct: 185 LLFSATLEGEAIREFAERILTEPVELEADPSRRERKKIQQWYYRA-DNIEHKTALLVHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +  K+ IIF   ++ V  L   L + G +   + G + Q  R + +    +G + ++
Sbjct: 244 KQPEVQKS-IIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+A+RGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D
Sbjct: 303 VATDVASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHD 356


>gi|39972847|ref|XP_367814.1| hypothetical protein MGG_07718 [Magnaporthe oryzae 70-15]
 gi|152013519|sp|A4QYM6|DRS1_MAGO7 RecName: Full=ATP-dependent RNA helicase DRS1
 gi|145012485|gb|EDJ97139.1| hypothetical protein MGG_07718 [Magnaporthe oryzae 70-15]
          Length = 790

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 141/362 (38%), Positives = 203/362 (56%), Gaps = 3/362 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  ++  +   G+ KPTPIQ KTIP+ L   DV G A TG+GKTA+FV+P+L  
Sbjct: 257 FQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILER 316

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R +IL PTRELA Q      K   + ++   L +GG+  + Q  +L   
Sbjct: 317 LLYRPKKVPTSRVVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESELRLR 376

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 377 PDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTM 436

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMT  +  +    L  P R+ V++   T  T+   FV     +  K+   L  L +
Sbjct: 437 LFSATMTSSVDNLIRVGLNKPVRLMVDSQKKTVVTLTQEFVRLRPGREEKRMGYLVYLCK 496

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  T +  IIF  QKK   +        G S   +HG++ Q  R++ +  F++G +  ++
Sbjct: 497 NLYTERV-IIFFRQKKIAHHARIIFGLLGLSCAELHGSMSQIQRIQSVEAFRDGKVSFLL 555

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G A TL A+ D K + A 
Sbjct: 556 ATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAA 615

Query: 361 EK 362
            K
Sbjct: 616 VK 617


>gi|46116580|ref|XP_384308.1| hypothetical protein FG04132.1 [Gibberella zeae PH-1]
 gi|91206540|sp|Q4IF76|DBP2_GIBZE RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 555

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 207/373 (55%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 136 FDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPSIVH 195

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+ +  +K+G++  +    + GG+P   Q 
Sbjct: 196 INAQPLLAPGDG----PIVLVLAPTRELAVQIQEEMKKFGRSSRIRNTCVYGGVPKGPQI 251

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 252 RDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 311

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E++ ++ +FLQ+  ++ + +    A       V    +  K+  +++
Sbjct: 312 DRQTLMWSATWPKEVRALASDFLQDFIQVNIGSMELAANHRITQIVEVVTEMEKRDRMIK 371

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            + +  +  +N I IF   K+    +   L + G+   +IHG+  Q  R  +L  FK G 
Sbjct: 372 HMEKVMENKENKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGK 431

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+A+RG+D+ ++ HV N+D PN +E+YIHRIGRTGRAG  G A TL   ++ K
Sbjct: 432 SPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAMGTAITLFTTDNQK 491

Query: 356 HI-DAIEKLIEKK 367
              D +  L E K
Sbjct: 492 QARDLVNVLQEAK 504


>gi|183979315|dbj|BAG30754.1| DEAD box polypeptide 5 [Papilio xuthus]
          Length = 539

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 205/353 (58%), Gaps = 9/353 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +      V+  + + GY +PTPIQ +  P+ +  H++ GIAQTG+GKT +++LP +  
Sbjct: 109 FEEGNFPDYVMQNISNMGYKEPTPIQAQGWPIAMSGHNLVGIAQTGSGKTLAYILPAIVH 168

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA Q+      +G    +    + GG P   Q + LE
Sbjct: 169 INNQPPIRRGDGPIALVLAPTRELAQQIQQVACDFGNASYVRNTCVFGGAPKREQARDLE 228

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 229 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT 288

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALL 235
           L++SAT   E++K++E++L +  +I + +   +A     + ++ C    + + +K   LL
Sbjct: 289 LMWSATWPKEVKKLAEDYLGDYLQINIGSLQLSANHNILQIVDVC--QEHEKENKLNVLL 346

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q++ QSQ+     IIF   K+ V N+  ++ + G+    +HG+  Q+ R  +L  FK+G 
Sbjct: 347 QEIGQSQEPGAKTIIFVETKRKVENITRNIRRFGWPAVCMHGDKTQQERDDVLYQFKQGR 406

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             ++VA+D+AARGLD+  + +V NFD PN +E+YIHRIGRTGR+   G ++  
Sbjct: 407 ASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAF 459


>gi|188590818|ref|YP_001795418.1| ATP-dependent RNA helicase dbpa [Cupriavidus taiwanensis LMG 19424]
 gi|170937712|emb|CAP62696.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Cupriavidus
           taiwanensis LMG 19424]
          Length = 469

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 143/379 (37%), Positives = 212/379 (55%), Gaps = 10/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LSP ++  +   GY + TPIQ  ++P+ L   D+   A+TG+GKTA+F L +L  
Sbjct: 14  FSALPLSPAMLATLAQLGYDEMTPIQAASLPITLAGQDLVAQAKTGSGKTAAFGLALLHR 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    ++L PTRELA QV     +  +   N+ V  L GG P   Q   L  
Sbjct: 74  LDPRRFDVQ---AMVLCPTRELADQVTQEIRRLARAEENVKVLTLCGGSPMRPQVDSLIH 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRILDH +RG L +  I  LV+DEADRMLDMGF   I  + S  P  RQTL
Sbjct: 131 GAHIVVGTPGRILDHIDRGSLDLAAINTLVLDEADRMLDMGFFDDIAYVASRCPRDRQTL 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    + K+S  FL+NP+ +++        TI   F     + S++   + +LL  
Sbjct: 191 LFSATYPPGIDKLSHRFLRNPQSLKLEATHDNT-TIRQRFYEV--EESERLNAVGRLLDH 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  + FCN K    +L   L  QG+   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 248 FRPAST-LAFCNTKARCRDLVELLRAQGYQALALHGELEQRERDQVLVQFANRSCSVLVA 306

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++    E ++HRIGRTGRA + G AF+LV+ +++  +  +E
Sbjct: 307 TDVAARGLDIAQLEAVINVEITPDPEVHVHRIGRTGRADQEGWAFSLVSMDEMGRVGNLE 366

Query: 362 KLIEKKVDWLNGDLSSLNP 380
           +    + +W    L+ L P
Sbjct: 367 QHHGGEFEW--HPLAELTP 383


>gi|222352149|ref|NP_061135.2| probable ATP-dependent RNA helicase DDX43 [Homo sapiens]
 gi|145559466|sp|Q9NXZ2|DDX43_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX43; AltName:
           Full=Cancer/testis antigen 13; Short=CT13; AltName:
           Full=DEAD box protein 43; AltName: Full=DEAD box protein
           HAGE; AltName: Full=Helical antigen
          Length = 648

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 138/361 (38%), Positives = 212/361 (58%), Gaps = 7/361 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---MLTILEKG 66
           P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT  +++P    L +    
Sbjct: 251 PEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSL 310

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           + +   P  L+L PTRELA QV     KY     L    + GG   + Q ++L++G D++
Sbjct: 311 KGQRNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIEELKKGVDII 369

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + NI  LV+DEAD+MLDMGF P I  I   V   RQT++ SAT
Sbjct: 370 IATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSAT 429

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
               + ++++++L+ P  + V T    A  +++   + T  +  +K + +Q  LQS  + 
Sbjct: 430 WPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEE--EKWSHMQTFLQSMSST 487

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F ++K    +L   L     SV ++HG+ +QR R K L NFK G +++++A+DLA
Sbjct: 488 DKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDLA 547

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLD+ DV HV+NFD P   E Y+HRIGRTGRAGR G + T + + D +    +  ++E
Sbjct: 548 SRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINILE 607

Query: 366 K 366
           +
Sbjct: 608 R 608


>gi|284047862|ref|YP_003398201.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
           DSM 20731]
 gi|283952083|gb|ADB46886.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
           DSM 20731]
          Length = 417

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 139/410 (33%), Positives = 218/410 (53%), Gaps = 20/410 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L +   +V  +   G   PTP+Q + IP +L   DV   AQTG GKT SFV+P+   
Sbjct: 5   FAQLKVDETMVEKLHRTGKDIPTPVQERAIPALLNGRDVIARAQTGVGKTLSFVIPLFDK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    LIL PTRELA Q A    K   +  +    + GG  FE + +K+   
Sbjct: 65  VDPQKEFVQ---ALILSPTRELAQQTAGEIRKLEGDTGIRTLTVSGGRDFEEEKRKIGHR 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A VL+ TPGR+LDH  +G   +  ++ LV+DE D ML  GF   I+ + SL+P   QT++
Sbjct: 122 AQVLVGTPGRLLDHLRKGNTSLGGVKYLVLDEVDEMLRQGFGEDIETLLSLMPQPHQTMM 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+ +E++K+      NP  I++    STA TI    +     +  K   L  L++  
Sbjct: 182 CSATLDEEVRKLGRQLTTNPLVIDIAPKESTASTIHQICIKVSEDH--KADALASLIRRY 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     ++FC  K+  + L   L  +GF+V  +HG++ Q  R +++ NF++  +Q++VAS
Sbjct: 240 NPFLM-LVFCCSKERAIELSDWLYGEGFNVDVLHGDMSQTKRRQVMENFRKAKLQILVAS 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  +  V N+D+P+  + Y+HRIGRTGRAG  G A T    ++ + +  +EK
Sbjct: 299 DIAARGLDVEGITQVVNYDIPHDPDWYVHRIGRTGRAGSEGTAITFYTADETRWLQNLEK 358

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
                          L+  LE+ ++A     R   P+  K     +R K+
Sbjct: 359 --------------KLDITLERQNLAGETVRRTVKPVRPKKKRVPKRGKS 394


>gi|258624240|ref|ZP_05719189.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM603]
 gi|258583391|gb|EEW08191.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM603]
          Length = 452

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 140/389 (35%), Positives = 213/389 (54%), Gaps = 12/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLSIAGRDLLASSKTGSGKTLAFVLPML 64

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   + PR +IL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 65  HKSLKTKAFSAKDPRGVILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGR+ DH +   L ++ +E LV+DEADRMLD+GF   ++ I +     R 
Sbjct: 125 ARDPKFIVATPGRLADHLDHRSLFLDGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   ++  ++   L  PKRI +   S   + I +H ++  +  +  K ALL+
Sbjct: 185 QTLMFSATLDHADVNDIAMEMLNEPKRIAIGVGSEEHKDITQHFYLCDHLDH--KEALLE 242

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L   +  +  IIF   + +   L   L +      A+ GN++Q  R  I+S F+    
Sbjct: 243 RILADAE-YRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQAQRNTIMSQFERVVF 301

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++V +D+A+RGLDIP V HV NFD+P   E Y+HRIGRTGRAG  G A +LV  +D   
Sbjct: 302 KILVTTDVASRGLDIPTVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAMSLVGPKDWDS 361

Query: 357 IDAIEKLIEKKV-----DWLNGDLSSLNP 380
              +E  +++++     D L G    L P
Sbjct: 362 FKRVEAFLQQEIQFEVLDGLAGKFKGLKP 390


>gi|170722989|ref|YP_001750677.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida W619]
 gi|169760992|gb|ACA74308.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 452

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 218/370 (58%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+   L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 15  FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 74

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++   ARV + R LIL PTRELA Q     + + +   +   L+ GG  F+ Q   L +
Sbjct: 75  LVDLKGARVEI-RALILLPTRELAQQTLKQVQLFSQFTYIKAGLVTGGEDFKEQAAMLRK 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DVLI TPGR+L+  N G L +++++++++DEADRMLDMGF   ++ +        QTL
Sbjct: 134 VPDVLIGTPGRLLEQLNAGNLDLSHVQVMILDEADRMLDMGFAEDMERLCKECENREQTL 193

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAE-TIEHCFVATYAQYSKKCALLQQLL 239
           LFSAT     L+ +    L++P+ + +N+ S  AE T +    A + Q+  K A++Q LL
Sbjct: 194 LFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQVITADHDQH--KEAIVQWLL 251

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +     IIF N +     +   L  +      +HG  DQ+ R   +  FK+G+ +++
Sbjct: 252 -ANEKFDKAIIFTNTRVLADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVL 310

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + +
Sbjct: 311 VATDVAARGLDIDGLDLVINFDMPRSGDEYVHRIGRTGRAGGEGLAISLITHNDWNLMSS 370

Query: 360 IEKLIEKKVD 369
           IE+ ++++ +
Sbjct: 371 IERYLKQQFE 380


>gi|149197292|ref|ZP_01874344.1| ATP-dependent RNA helicase, specific for 23S rRNA [Lentisphaera
           araneosa HTCC2155]
 gi|149139838|gb|EDM28239.1| ATP-dependent RNA helicase, specific for 23S rRNA [Lentisphaera
           araneosa HTCC2155]
          Length = 462

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 138/371 (37%), Positives = 220/371 (59%), Gaps = 10/371 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA L LS  ++  V   GY + T IQ  ++P +L   D+   A+TGTGKTA+F L +L+
Sbjct: 5   DFASLPLSEDLIKNVASLGYEEMTEIQELSLPAILDGKDLIAQAKTGTGKTAAFGLGVLS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L     R+++   LIL PTREL  QV+       +   N+ +  L GG+PF  Q K + 
Sbjct: 65  KLVLDDYRIQV---LILCPTRELCEQVSKAIRDLARMMPNIKLLSLGGGMPFRPQMKSVA 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRIL H N+  L ++++  LV+DEADRMLDMGF   I  I       RQT
Sbjct: 122 HGAHIVVGTPGRILKHLNKSSLSLDHVRTLVLDEADRMLDMGFQDEIDAIIDQTNKQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
           LLFSAT   ++  +++  +++P RIE+++      TIE  F  V + +Q      LL   
Sbjct: 182 LLFSATYPKKIATIAKRVMKDPLRIELDSQVHEESTIEQHFYKVTSESQRLLGLQLLLDK 241

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +S+    + ++FCN K+   ++C  L K GFS  A+HG+++Q+ R + L  F   ++ +
Sbjct: 242 FKSE----SAVVFCNTKQEAKDICKDLSKVGFSTLALHGDLEQKDRQENLVRFANKSVAV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  +  V N+ +    E ++HRIGRTGRAG++G A +L ++++   I 
Sbjct: 298 LVATDVAARGLDIDSIDLVINYHISRDFEVHVHRIGRTGRAGKNGIACSLHSQKEAHKIS 357

Query: 359 AIEKLIEKKVD 369
            +++ + ++++
Sbjct: 358 LLQEFLGQEIE 368


>gi|8216985|emb|CAB92442.1| DEAD-box protein [Homo sapiens]
 gi|12053019|emb|CAB66685.1| hypothetical protein [Homo sapiens]
 gi|119569155|gb|EAW48770.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Homo sapiens]
          Length = 648

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 138/361 (38%), Positives = 212/361 (58%), Gaps = 7/361 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---MLTILEKG 66
           P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT  +++P    L +    
Sbjct: 251 PEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSL 310

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           + +   P  L+L PTRELA QV     KY     L    + GG   + Q ++L++G D++
Sbjct: 311 KGQRNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIEELKKGVDII 369

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + NI  LV+DEAD+MLDMGF P I  I   V   RQT++ SAT
Sbjct: 370 IATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSAT 429

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
               + ++++++L+ P  + V T    A  +++   + T  +  +K + +Q  LQS  + 
Sbjct: 430 WPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEE--EKWSHMQTFLQSMSST 487

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F ++K    +L   L     SV ++HG+ +QR R K L NFK G +++++A+DLA
Sbjct: 488 DKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDLA 547

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLD+ DV HV+NFD P   E Y+HRIGRTGRAGR G + T + + D +    +  ++E
Sbjct: 548 SRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINILE 607

Query: 366 K 366
           +
Sbjct: 608 R 608


>gi|323509361|dbj|BAJ77573.1| cgd3_2330 [Cryptosporidium parvum]
          Length = 557

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 132/355 (37%), Positives = 203/355 (57%), Gaps = 3/355 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G SPK++ ++   GY  PTPIQ K  P +L   DV  +A+TG+GKTA FVLPM+  
Sbjct: 6   FQCFGFSPKLLESIKIIGYSLPTPIQRKCFPSILAGRDVVAMARTGSGKTAGFVLPMIER 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L    +++   R +IL PTRELA Q      K     NL V  L GG   + Q + L   
Sbjct: 66  LGCSHSQIVGIRGVILSPTRELALQTYRVVRKLACKTNLVVCALTGGSSLDRQFESLSGN 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+  H     L +  ++I+V+DEADR+ +MG    I+ I   +P  RQ +L
Sbjct: 126 PDIVVATPGRLFHHIIEAGLSLIAVKIIVLDEADRLFEMGLASQIEKILESIPKNRQCVL 185

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM   L   S+  L  P+ I++++    +ET++  F+  + +  +K A L  LL++ 
Sbjct: 186 VSATMPTALASFSKVMLNEPEVIQIDSDYILSETLKLTFL--FVREDEKLASLLYLLRNT 243

Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  IIFC  K +V  +   LE     V  I+GN+DQ +R   L+ F++   + ++ 
Sbjct: 244 IPSHERAIIFCATKHHVDYIVKILESNNIIVSYIYGNMDQEARTMHLNTFRKNKSRALIV 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +D+AARG+DIP + +V NFD P   + ++HR GRT RAG+HG+AF+L+   D+ +
Sbjct: 304 TDIAARGVDIPMIKYVINFDFPLSPKLFVHRTGRTARAGQHGRAFSLITSRDLPY 358


>gi|220681310|gb|ACL80031.1| vasa-like protein [Bombyx mori]
          Length = 468

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 139/378 (36%), Positives = 216/378 (57%), Gaps = 20/378 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   V+  VL AGY KPTPIQ   IP+++   D+ G AQTG+GKTA+F++P++ +
Sbjct: 49  FKTANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIINM 108

Query: 63  L---------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
           L         E G A+   P+ +I+ PTREL  Q+ +   K+     L VA+  GG    
Sbjct: 109 LLQDPKDLISENGCAQ---PQVIIVSPTRELTLQIFNEARKFSYGSVLKVAVAYGGTAVR 165

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT-- 171
            Q   + RG  +L+ TPGR+ D   R ++   ++  +V+DEADRMLDMGF+P I+ +   
Sbjct: 166 HQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSIEKMMLH 225

Query: 172 -SLVPFT-RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
            ++V  T RQTL+FSAT  +++Q ++  FL N   + V      +  +E  F+    +Y 
Sbjct: 226 PTMVETTKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEV-TKYE 284

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+ +L +QL++  D  K  ++F   K+N   +   L +Q     +IHG+  QR R + L 
Sbjct: 285 KRNSL-KQLIEENDG-KRILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQ 342

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           NFK G   ++VA+ +AARGLDI +V  V N+D+P   + Y+HRIGRTGR G  GKA +  
Sbjct: 343 NFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFY 402

Query: 350 -AKEDIKHIDAIEKLIEK 366
            + +D+  +  + K++ +
Sbjct: 403 DSDQDLALVADLSKILRQ 420


>gi|327284970|ref|XP_003227208.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Anolis
           carolinensis]
          Length = 647

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 213/381 (55%), Gaps = 20/381 (5%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 94  PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 153

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 154 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 209

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 210 VEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 269

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQ 237
           +SAT   E+++++E+FL +  +I V     +A     + ++ C  +   +  K   L+++
Sbjct: 270 WSATWPKEVRQLAEDFLHDYVQINVGNLELSANHNILQIVDVCMESE--KDHKLIQLMEE 327

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   
Sbjct: 328 IMAEKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAP 385

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K  
Sbjct: 386 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 445

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K++E+    +N  L  L
Sbjct: 446 RELIKVLEEANQAINPKLMQL 466


>gi|117645818|emb|CAL38376.1| hypothetical protein [synthetic construct]
 gi|208967747|dbj|BAG72519.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [synthetic construct]
          Length = 648

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 138/361 (38%), Positives = 212/361 (58%), Gaps = 7/361 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---MLTILEKG 66
           P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT  +++P    L +    
Sbjct: 251 PEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSL 310

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           + +   P  L+L PTRELA QV     KY     L    + GG   + Q ++L++G D++
Sbjct: 311 KGQRNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNGDEQIEELKKGVDII 369

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + NI  LV+DEAD+MLDMGF P I  I   V   RQT++ SAT
Sbjct: 370 IATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSAT 429

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
               + ++++++L+ P  + V T    A  +++   + T  +  +K + +Q  LQS  + 
Sbjct: 430 WPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEE--EKWSHMQTFLQSMSST 487

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F ++K    +L   L     SV ++HG+ +QR R K L NFK G +++++A+DLA
Sbjct: 488 DKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDLA 547

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLD+ DV HV+NFD P   E Y+HRIGRTGRAGR G + T + + D +    +  ++E
Sbjct: 548 SRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINILE 607

Query: 366 K 366
           +
Sbjct: 608 R 608


>gi|189053928|dbj|BAG36435.1| unnamed protein product [Homo sapiens]
          Length = 648

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 138/361 (38%), Positives = 212/361 (58%), Gaps = 7/361 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---MLTILEKG 66
           P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT  +++P    L +    
Sbjct: 251 PEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSL 310

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           + +   P  L+L PTRELA QV     KY     L    + GG   + Q ++L++G D++
Sbjct: 311 KGQRNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIEELKKGVDII 369

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + NI  LV+DEAD+MLDMGF P I  I   V   RQT++ SAT
Sbjct: 370 IATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSAT 429

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
               + ++++++L+ P  + V T    A  +++   + T  +  +K + +Q  LQS  + 
Sbjct: 430 WPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEE--EKWSHMQTFLQSMSST 487

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F ++K    +L   L     SV ++HG+ +QR R K L NFK G +++++A+DLA
Sbjct: 488 DKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDLA 547

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLD+ DV HV+NFD P   E Y+HRIGRTGRAGR G + T + + D +    +  ++E
Sbjct: 548 SRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINILE 607

Query: 366 K 366
           +
Sbjct: 608 R 608


>gi|302535753|ref|ZP_07288095.1| ATP-dependent RNA helicase [Streptomyces sp. C]
 gi|302444648|gb|EFL16464.1| ATP-dependent RNA helicase [Streptomyces sp. C]
          Length = 694

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 132/347 (38%), Positives = 190/347 (54%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L  
Sbjct: 61  FADLGLPEGVVRKLGQNGVTSPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLAR 120

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G    + PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LERG
Sbjct: 121 LADGHTEKKKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERG 180

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVL+ TPGR+ D  NRG   + N+E+ V+DEAD+M D+GF+P +  +   VP   Q +L
Sbjct: 181 VDVLVATPGRLRDIINRGACSLENVEVAVLDEADQMADLGFLPEVTELLDQVPAGGQRML 240

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E+  + + +L NP   EV++      T+ H  +       K  A +   + ++
Sbjct: 241 FSATMENEIGTLVKRYLSNPVSHEVDSAQGNVTTMTHHVLVV---KPKDKAPVTAAIAAR 297

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L + G    A+HG + Q +R ++L++FK+G +  +VA+
Sbjct: 298 KGRT--IIFVRTQLGADRIAEQLIEAGVKADALHGGMTQGARTRVLADFKDGYVNALVAT 355

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+ +  +  V N D     ++Y+HR GRT RAG+ G   +L 
Sbjct: 356 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGVVVSLA 402


>gi|221068762|ref|ZP_03544867.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
 gi|220713785|gb|EED69153.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
          Length = 707

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 144/417 (34%), Positives = 228/417 (54%), Gaps = 56/417 (13%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGI------AQTGTGKTASF 55
           F +LGL+P++V AV D GY +PT +Q K IPL + +  D  G       +QTG+GKTA+F
Sbjct: 58  FVELGLAPELVQAVADLGYTQPTQVQQKAIPLAMGEAADASGFIDLMVSSQTGSGKTAAF 117

Query: 56  VLPMLTILEKGRA---------------------------------------RVRMPRTL 76
           +LP+L  L + RA                                       +  +P  L
Sbjct: 118 LLPVLHTLIEQRAQADADAKAEFERLCAEATAKGEPVPKRNKRKDPTNSRNFKAAVPGAL 177

Query: 77  ILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           +L PTRELA QVA D  E       + +A ++GGIP++ Q  KL+  AD+++ TPGR+LD
Sbjct: 178 VLCPTRELAQQVAHDAIELVKHCRGIRIANVVGGIPYQLQIAKLQN-ADLVVATPGRLLD 236

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
                ++ ++ ++ LV+DEADRMLD+GF   +  +  +    +QT++FSAT    +Q+++
Sbjct: 237 LQRSMQIKLDKVQFLVVDEADRMLDLGFSDDLAEVNVMTAQRKQTMMFSATFAPRVQQLA 296

Query: 196 ENFLQNP----KRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQSQDTMKNGII 250
              + +     K++ V+TP     +I+   F A  AQ+ +K  +L   L+   ++   I+
Sbjct: 297 MRVMHDNGSGVKKVTVDTPQEKHASIKQVLFWADNAQHKRK--MLDHWLRD-SSINQAIV 353

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F + +     L   L++ GFS  A+HG + Q  R + L   + G +Q++VA+D+AARG+D
Sbjct: 354 FASTQVECDGLATDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGID 413

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           +P + HVFN+ +P +AE+Y HRIGRTGRAGR G A T     D + +  IE    ++
Sbjct: 414 VPTITHVFNYGLPMKAEDYTHRIGRTGRAGREGTAVTFAEFRDRRRVFDIEGYTRQQ 470


>gi|317025749|ref|XP_001389716.2| ATP-dependent RNA helicase drs1 [Aspergillus niger CBS 513.88]
          Length = 827

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 143/361 (39%), Positives = 203/361 (56%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS  ++  +    +  PTPIQ KTIP+ L   D+ G A TG+GKTA+FV+P+L  
Sbjct: 311 FQEFNLSRPILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILER 370

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++ 
Sbjct: 371 LLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKR 430

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 431 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTM 490

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMTD + K+    L  P R+ V+   +TA T+   FV     +  K+   L  L +
Sbjct: 491 LFSATMTDTVDKLIRVGLNRPVRLMVDAKKNTAVTLVQEFVRLRPGREDKRLGYLLYLCK 550

Query: 241 SQDTMKNGIIFCNQKKNV--VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              T +  I+F  QKK    V +   L   G     +HG++ Q  R+K + NF+EG    
Sbjct: 551 EIYTGRV-IVFFRQKKEAHRVRIIFGL--LGLKAAELHGSMSQEQRIKSVENFREGKAAF 607

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + 
Sbjct: 608 LLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVK 667

Query: 359 A 359
           A
Sbjct: 668 A 668


>gi|301510878|ref|ZP_07236115.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AB058]
          Length = 344

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 133/344 (38%), Positives = 204/344 (59%), Gaps = 12/344 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++  A+   G+ + TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 5   FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     ++ R R   PR LIL PTRELA Q+  + +   K  NL +  L+GG+ F+ Q K
Sbjct: 65  LLNNPVQEQRFRGE-PRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKK 123

Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +L+    D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P 
Sbjct: 124 QLDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPR 183

Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTL+FSAT + ++  ++  +L  P  +E+     T   +E        Q   K  L
Sbjct: 184 KEQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQ--DKYRL 241

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ +L+ ++ +   +IF N++  V  L   L+K G+ V  + G I Q  R+K+L  FK+G
Sbjct: 242 LQDILR-EEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQG 300

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
              +M+A+D+A RG+ +  V HV NF +P ++++Y+HRIGRTGR
Sbjct: 301 KHNIMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGR 344


>gi|119494918|ref|XP_001264258.1| ATP-dependent RNA helicase (Drs1), putative [Neosartorya fischeri
           NRRL 181]
 gi|142982588|sp|A1D1R8|DRS1_NEOFI RecName: Full=ATP-dependent RNA helicase drs1
 gi|119412420|gb|EAW22361.1| ATP-dependent RNA helicase (Drs1), putative [Neosartorya fischeri
           NRRL 181]
          Length = 819

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 138/355 (38%), Positives = 200/355 (56%), Gaps = 3/355 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS  ++  +    +  PTPIQ KTIP+ L   D+ G A TG+GKTA+FV+P+L  
Sbjct: 301 FQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILER 360

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q  +   K   + ++T   L+GG     Q   L++ 
Sbjct: 361 LLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATHTDITFCQLVGGFSLREQENILKKR 420

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 421 PDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPQSRQTM 480

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMTD + K+    L  P R+ V++  +T+  +   FV     +  K+   L  L  
Sbjct: 481 LFSATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLTQEFVRLRPGREDKRLGYLLYLCN 540

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  I+F  QK+    +       G     +HG++ Q  R+K + NF+EG +  ++
Sbjct: 541 EIYTGRV-IVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVENFREGKVAFLL 599

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K
Sbjct: 600 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRK 654


>gi|90414227|ref|ZP_01222207.1| ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90324674|gb|EAS41215.1| ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 437

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 135/372 (36%), Positives = 210/372 (56%), Gaps = 9/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL P V+  +   G+   TPIQ   +P+VL   D+ G AQTGTGKT +F+      
Sbjct: 11  FADLGLEPTVLQGLDAQGFHNCTPIQALALPVVLTGQDIAGQAQTGTGKTLAFLTATFNH 70

Query: 63  L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L         +   PR +I+ PTRELA Q+ ++      +  L   L  GG  +E Q K 
Sbjct: 71  LLLNPASDERKTNQPRAIIMAPTRELAIQIYNDAAPLLASTGLKAGLAYGGEAYEKQQKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-- 176
              G D+LI T GRI+D + +  + + +I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 FAEGVDILIGTCGRIIDFYKQRVIDLASIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPK 190

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R  +LFSAT++  +++++   + +P+ + V     T   I+      Y    +K  LLQ
Sbjct: 191 ARLNMLFSATLSYRVKELAFEHMNSPESVVVEPDQKTGHRIQEELF--YPSNQEKMRLLQ 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ ++     IIF N K    ++   L      V  ++G++ Q+ R++IL  F +G I
Sbjct: 249 TLIE-EEWPDRAIIFANTKHRCEDIWGHLAADNHRVGLLNGDVPQKKRVRILEQFTQGEI 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL IP V HV+N+D+P+ AE+Y+HRIGRTGRAG  G + +   +E   +
Sbjct: 308 DILVATDVAARGLHIPQVTHVYNYDLPDDAEDYVHRIGRTGRAGESGNSISFACEEYAIN 367

Query: 357 IDAIEKLIEKKV 368
           + AIE  IE  +
Sbjct: 368 LPAIETYIEHPI 379


>gi|91223036|ref|ZP_01258302.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
 gi|91191849|gb|EAS78112.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
          Length = 412

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 141/368 (38%), Positives = 210/368 (57%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS +++ A L   + KPT IQ   IP +L   D+  +A TG+GKT ++ LP+L
Sbjct: 1   MPFSTLSLSSELIHA-LPKDFKKPTYIQALAIPELLAGQDLLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +    + LIL PTRELA QV++   + G+   L    L GG+  E Q + L 
Sbjct: 60  EKLGVNPEQ----KALILVPTRELAMQVSEAINQVGQVLELNAVCLCGGVDKEQQQQALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ T GR++D  N G L ++NI  LV+DEADR+LDMGF P +QNI  L+   RQT
Sbjct: 116 TNPHILVATTGRLVDLANNG-LDLSNIHYLVLDEADRLLDMGFWPDVQNIAGLISNQRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT +DEL+  ++  +  PK++  +  +ST + I         + SK  AL++  L 
Sbjct: 175 AMFSATFSDELKGKAKLLMPAPKQVAAHQENSTNQDIAETLYLVN-KGSKTKALIE--LI 231

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     ++F   K+N   L   L K G S  A+HGN  Q  R + L+ FK G IQ+++
Sbjct: 232 QKNAWTQALVFIGAKENADGLAKKLNKAGISTNALHGNKSQDEREEALAQFKSGQIQVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG  G A +LV   ++  + AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVAVSLVCHGEMDALSAI 351

Query: 361 EKLIEKKV 368
             L ++ +
Sbjct: 352 RHLTQRAL 359


>gi|302525261|ref|ZP_07277603.1| ATP-dependent RNA helicase [Streptomyces sp. AA4]
 gi|302434156|gb|EFL05972.1| ATP-dependent RNA helicase [Streptomyces sp. AA4]
          Length = 613

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 133/355 (37%), Positives = 200/355 (56%), Gaps = 5/355 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   ++ A+ +AG   P PIQ  TIP  L   DV G AQTG+GKT +F L +L  
Sbjct: 83  FAQLGLPEPLLRALAEAGIDAPFPIQSATIPDALAGRDVLGRAQTGSGKTLAFGLAILAR 142

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G+AR + PR L+L PTRELA QVAD+     K+  L     +GG+ F  Q + L RG
Sbjct: 143 LDGGKARPKRPRALVLVPTRELAMQVADSLTPLAKSLGLWCRTAVGGMSFGRQAESLARG 202

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI TPGR+ DH  +G   + +   + +DEAD+M DMGF+P ++ I  L P   Q LL
Sbjct: 203 VDLLIATPGRLSDHVRQGTASLGDCNFIALDEADQMADMGFMPQVREIMDLTPPGGQRLL 262

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  ++ K+   +L +P    V   +++  T++H        +S K  ++ ++   +
Sbjct: 263 FSATLDGDVDKLVRQYLADPVTHSVAPSTASVTTMDHHLFQV--SHSDKQDIITRIGARE 320

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F   K +V  L   L + G    A+HG   Q  R ++L++FKEG   ++VA+
Sbjct: 321 GRT---IMFVRTKHHVDRLTERLRESGVHAVALHGGKTQGQRNRVLADFKEGHAAVLVAT 377

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           D+AARG+ + ++  V + D     ++Y+HR GRT RAG  G   TLV  +  + +
Sbjct: 378 DVAARGIHVDNISLVLHVDPAADHKDYLHRAGRTARAGASGIVVTLVTHDQRRTV 432


>gi|145629971|ref|ZP_01785753.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|144984252|gb|EDJ91675.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
          Length = 415

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 213/368 (57%), Gaps = 10/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   +        PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 71  LLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQAI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P    
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVICLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           R T+LFSAT++ ++++++   + +P+ IE+     T   I E  F   Y     K ALL 
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELF---YPSNQDKMALLL 247

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ +   +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G +
Sbjct: 248 TLMEDE-WPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGNL 306

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   +
Sbjct: 307 DILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMN 366

Query: 357 IDAIEKLI 364
           + AIE+ I
Sbjct: 367 LPAIEEYI 374


>gi|58426933|gb|AAW75970.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 482

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 144/381 (37%), Positives = 215/381 (56%), Gaps = 9/381 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ L LSP +   +   GY   TP+Q +++P +L+  DV   A TG+GKTA+F L +L 
Sbjct: 27  EFSALPLSPALAPGIDALGYTVLTPVQAQSLPPILRGLDVIAQAPTGSGKTAAFGLGLLQ 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+    R +    L+L PTRELA QV     K      N+ + +L GG+P   Q   LE
Sbjct: 87  KLDPALTRAQ---ALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 143

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I S     RQ
Sbjct: 144 AHDPHVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 203

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT  D ++ ++   L++P  I V    +  E I+  F      Y +K A+   LL
Sbjct: 204 SLLFSATFPDIIRTLAREILKDPIEITVEGADNAPE-IDQQFFEVDPTYRQK-AVAGLLL 261

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   T ++ ++FCN +K V  +  SL++ GFS  A+HG+++QR R ++L  F   +  ++
Sbjct: 262 RF--TPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+HG A +LVA  +     A
Sbjct: 320 VASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARAQA 379

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           +E    + + W    L++  P
Sbjct: 380 LEAEQGQPLKWSRAPLATARP 400


>gi|257068313|ref|YP_003154568.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
 gi|256559131|gb|ACU84978.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
          Length = 582

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 129/359 (35%), Positives = 203/359 (56%), Gaps = 8/359 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FAD  +   +V A+   G   P PIQ  T+P+ L+  D+ G A+TGTGKT  F +P+L  
Sbjct: 33  FADFDVRTDIVEALAAKGITTPFPIQSLTLPVALRGRDIIGQAKTGTGKTLGFGIPLLQN 92

Query: 62  ILEKGRAR-----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +  G        +  P+ L++ PTRELA QVA + E       + +  + GG  +E Q 
Sbjct: 93  SVAPGEPNPADRPIGTPQALVVLPTRELAVQVAHDLETASAKRPIRILTVYGGRAYEPQI 152

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + LE+G +V++ TPGR++D   +  L ++ +   V+DEAD MLD+GF+  I+ +   VP 
Sbjct: 153 EALEKGVEVVVGTPGRLIDLMRQKYLDLSQVRTAVLDEADEMLDLGFLEDIEKLLQAVPV 212

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALL 235
            RQT+LFSATM   +  ++  F++ P  I  + P   + T        Y A    K  ++
Sbjct: 213 KRQTMLFSATMPGPIMALARRFMKQPTHIRAHDPGDESRTKADIKQVVYRAHQLDKIEVM 272

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            ++LQ++    + IIF   K+    +   L  +GF+   +HG++ Q +R + L  F+ G 
Sbjct: 273 ARILQARGRGLS-IIFMRTKRQADRVAGDLADRGFAAAPLHGDLGQGAREQALRAFRSGK 331

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           I ++VA+D+AARG+D+ DV HV N++ P+  + Y+HR GRTGRAG+ G A T V  ED+
Sbjct: 332 IDVLVATDVAARGIDVTDVTHVVNWNCPDDDKTYLHRTGRTGRAGKKGTAITFVDWEDL 390


>gi|312372785|gb|EFR20671.1| hypothetical protein AND_19720 [Anopheles darlingi]
          Length = 1061

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 136/353 (38%), Positives = 204/353 (57%), Gaps = 10/353 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA  GL+  ++  V  +GY KPTPIQ   IP+VL+  D+ G AQTG+GKTA+F+LPM+  
Sbjct: 119 FAQSGLNEVLLNNVRRSGYNKPTPIQRHAIPIVLKGRDMMGCAQTGSGKTAAFMLPMIDW 178

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           IL +   ++  R P  L++ PTREL  Q+ D   K+     L V  + GG     Q + L
Sbjct: 179 ILGQQDLQLHHRQPYVLVVAPTRELVIQIHDEARKFSHGTGLKVVCIYGGAASTHQLQML 238

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NITSLVP 175
             G  +++ TPGR+LD  +RG +    ++ +V+DEADRMLDMGF+P I+    N T    
Sbjct: 239 RGGCQIMVATPGRLLDFMDRGVVSFEKVKYVVLDEADRMLDMGFLPAIEKVMGNATMPSK 298

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTL+FSAT   ++Q+++  FL N   + V         +E   V    +  KK   L
Sbjct: 299 DQRQTLMFSATFAPDIQQLAGVFLNNYIYVAVGIVGGACGDVEQ--VVYEVEKFKKRKKL 356

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++LL  +   +  ++F   K++   L   + +  F   +IHG+  QR R   L +FKEG 
Sbjct: 357 EELL-GEGNARGTLVFVETKRSADYLASLMSETKFPTTSIHGDRLQREREMALKDFKEGR 415

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           + +++A+ +AARGLDI +V HV N+D+P   ++Y+HRIGRTGR G  G+A + 
Sbjct: 416 MDVLIATSVAARGLDIKNVSHVVNYDLPKNIDDYVHRIGRTGRVGNKGRATSF 468


>gi|15603786|ref|NP_246860.1| ATP-dependent RNA helicase RhlB [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|32363392|sp|Q9CJS1|RHLB_PASMU RecName: Full=ATP-dependent RNA helicase rhlB
 gi|12722355|gb|AAK04005.1| RhlB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 423

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 144/383 (37%), Positives = 224/383 (58%), Gaps = 9/383 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L  +V+ A+ + G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+    
Sbjct: 9   LRFSDLPLHHQVLAALQEKGFDYCTPIQALSLPMSLAGKDVAGQAQTGTGKTMAFLTATF 68

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L  ++G    R PR LIL PTRELA Q+ ++     K   L   L  GG  +E Q K 
Sbjct: 69  HHLLTQQGDKGGRQPRALILAPTRELAVQINNDAALLTKATGLKTGLAYGGDGYEKQLKA 128

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
           +E+G D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P   
Sbjct: 129 IEQGVDILIGTTGRVIDYVKQGIVRLDKIQVVVLDEADRMFDLGFIKDIRYLLRKCPAPQ 188

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
            R T+LFSAT++ ++++++   + +P+ +E+     T   I E  F   Y     K ALL
Sbjct: 189 HRLTMLFSATLSYKVRELAFEDMNDPEYVEIEPLQKTGHRIKEELF---YPSNQDKMALL 245

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL+ +   +  IIF N K    ++   L   G  V  + G++ Q+ R+ +L  F EG 
Sbjct: 246 LTLLEEE-WPERCIIFANTKHRCEDIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTEGH 304

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   
Sbjct: 305 LDILVATDVAARGLHISDVSHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAM 364

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
           ++ AIE+ I   +     D+++L
Sbjct: 365 NLPAIEEYISHSIPVSQYDVAAL 387


>gi|301344661|ref|ZP_07225402.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AB056]
 gi|301512465|ref|ZP_07237702.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AB058]
 gi|301595454|ref|ZP_07240462.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AB059]
          Length = 347

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 132/347 (38%), Positives = 209/347 (60%), Gaps = 15/347 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP L  
Sbjct: 5   FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 64

Query: 63  L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111
           L          E+ +A V  P  L+L PTRELA QV+ +   + ++   + +A ++GG+P
Sbjct: 65  LAGQDTFVPFKERMKA-VTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           F  Q ++L +GA V++ TPGR+LD  NR +L ++ ++ L++DEADRMLD+GF   ++ I+
Sbjct: 124 FGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 182

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            L     QTL+FSAT  D + +++E  +  P+RI + T  ST   I      T     KK
Sbjct: 183 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 242

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L   L  + +T+   ++F + +++   L   L + G SV A+HG + Q  R + L + 
Sbjct: 243 KLLTHWL--ADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 300

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
           +EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGR
Sbjct: 301 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 347


>gi|260910887|ref|ZP_05917530.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella sp.
           oral taxon 472 str. F0295]
 gi|260634995|gb|EEX53042.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella sp.
           oral taxon 472 str. F0295]
          Length = 611

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 132/354 (37%), Positives = 214/354 (60%), Gaps = 10/354 (2%)

Query: 26  PIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84
           P+Q + IP +L   +DV  +AQTGTGKTA++ +P   +L+K     +  + LIL PTREL
Sbjct: 2   PVQEEVIPYLLGNGNDVIALAQTGTGKTAAYGIP---VLQKVNPEEKHTQALILSPTREL 58

Query: 85  AAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
             Q+AD+   + K    L V  + GG   E Q ++L +GA +++ TPGR++D   RG   
Sbjct: 59  CLQIADDLADFSKYVQGLHVVPVYGGASIEMQIRQLRKGAQIIVATPGRLIDLMKRGVAQ 118

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           ++N+  +V+DEAD ML+MGF   I  I   VP  R TLLFSATM+ E++K+++N+L + K
Sbjct: 119 LDNVNNVVLDEADEMLNMGFTESINAIFEGVPTDRNTLLFSATMSREIEKIAKNYLNDYK 178

Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
            I V + +  AE + H +    A+   K   L++L+     +   IIFC  K     +  
Sbjct: 179 EIVVGSRNEGAEKVNHIYYMVNAK--DKYLALKRLVDFYPRI-FAIIFCRTKIETQEIAD 235

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
            L + G++  A+HG++ Q+ R   +  F+   +Q +VA+D+AARGLD+ D+ HV N+ +P
Sbjct: 236 KLIRDGYNAEALHGDLSQQQRDLTMQKFRNHNVQFLVATDVAARGLDVDDLTHVINYGLP 295

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
           +  E+Y HR GRTGRAG+ G + +++   +   + +IEK+I+K  ++++G L +
Sbjct: 296 DDIESYTHRSGRTGRAGKKGTSISIIHTRERSKVRSIEKIIQK--EFVDGTLPT 347


>gi|212379240|gb|ACJ24856.1| putative ATP-dependent RNA helicase [Streptomyces pactum]
          Length = 788

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 129/349 (36%), Positives = 194/349 (55%), Gaps = 5/349 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL  ++V  +   G   P PIQ  TIP  +   D+ G  +TG+GKT SF LP+L
Sbjct: 87  LTFADLGLPEQIVRKLAQNGVTTPFPIQAATIPDAMAGRDILGRGRTGSGKTLSFGLPLL 146

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T L  G    + PR LIL PTRELA QV+D  + YG    L + ++ GG     Q   LE
Sbjct: 147 TTLSGGHTEKKRPRGLILTPTRELAMQVSDALQPYGDVLGLKLKVVCGGTSMGNQIYALE 206

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+ D  +RG   ++ +++ V+DEAD+M DMGF+P +  I  LVP   Q 
Sbjct: 207 RGVDILVATPGRLRDIIDRGAASLDRVQVAVLDEADQMADMGFLPEVTEILDLVPQGGQR 266

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ +E+  + + +L +P   EV+  +    T+ H  +       K  A +   + 
Sbjct: 267 LLFSATLENEIDTLVKRYLVDPVTHEVDPSAGAVSTMTHHVLVV---KPKDKAPVTAAIA 323

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      IIF   +     +   L   G    A+HG + Q +R + L++FK+G + ++V
Sbjct: 324 AR--KGRTIIFVRTQLGADRVAEQLRDSGVRADALHGGMTQGARTRTLADFKDGYVNVLV 381

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           A+D+AARG+ +  +  V N D     ++Y+HR GRT RAG+ G   +L 
Sbjct: 382 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGQSGTVVSLA 430


>gi|332029665|gb|EGI69554.1| Putative ATP-dependent RNA helicase DDX17 [Acromyrmex echinatior]
          Length = 595

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 130/355 (36%), Positives = 205/355 (57%), Gaps = 11/355 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            DF + G    V+  +   G+ +PT IQ +  P+ L   D+ GIA TG+GKT S++LP +
Sbjct: 129 FDFDEAGFPDYVLREIKRQGFSEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPAI 188

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +  +   +R   P  L+L PTRELA Q+    + +G +  +    L GG P  AQ + 
Sbjct: 189 VHINSQPKLSRKDGPIALVLAPTRELAQQIQQVADDFGHSSGIRNTCLYGGAPKGAQARD 248

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G +++I TPGR+LD    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 249 LDGGVEIVIATPGRLLDFLESGKTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 308

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCA 233
           QTL++SAT   E++ ++E+FL++  +I V +   +A     + I+ C    Y + +K   
Sbjct: 309 QTLMWSATWPKEVKNLAEDFLKDYAQINVGSLQLSANHNILQIIDVC--QDYEKENKLST 366

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL++++   +     I+F   K+ V  +   +++ G+    IHG+  Q+ R  +L +F+ 
Sbjct: 367 LLKEIMAESENKT--IVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWVLQDFRS 424

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           G   ++VA+D+AARGLD+ DV  V NFD P+ +E+Y+HRIGRTGR  + G A+T 
Sbjct: 425 GKAPILVATDVAARGLDVEDVKFVINFDYPSCSEDYVHRIGRTGRRQKTGTAYTF 479


>gi|302792278|ref|XP_002977905.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
 gi|300154608|gb|EFJ21243.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
          Length = 741

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 132/361 (36%), Positives = 202/361 (55%), Gaps = 1/361 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L +S  ++ A    GY +PTPIQ   IPL L   D+CG A TG+GKTA+F LP+L  
Sbjct: 117 FIELNVSRPLLRACDALGYRQPTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPILER 176

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     R+   R LI+ PTRELA Q+    EK  +  ++   L++GG+  + Q   L   
Sbjct: 177 LLFRPRRIPAIRVLIITPTRELAVQLHSMIEKLAQFTDIRCCLVVGGLSSKVQEVALRTH 236

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D+++ TPGR++DH  N   + +  + ILV+DEADR+L++GF   I  +  L P  RQT+
Sbjct: 237 PDIVVATPGRMIDHLRNTQSVGLEELAILVLDEADRLLELGFREEIHELVKLCPSRRQTM 296

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMTDE+ ++ +  L++P R+  +  +    T+    +   A + +    +   L S
Sbjct: 297 LFSATMTDEVSELIKLSLKSPVRLSADPSTERPSTLTEEVIRIRAGHEEDKEAIVLSLCS 356

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      IIF   K     L       G     +HGN+ Q  R++ L  F++  +  ++A
Sbjct: 357 RSLKSKTIIFSGTKVEAHRLKILFGLSGLKSAELHGNLTQAQRLEALEAFRKQEVDFLIA 416

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V  V N + P   + Y+HR+GRT RAGRHG++ TL+ ++D   + A+ 
Sbjct: 417 TDVAARGLDIIGVESVINLECPKEIKTYVHRVGRTARAGRHGRSVTLMTEQDRLLLKAVA 476

Query: 362 K 362
           K
Sbjct: 477 K 477


>gi|85860953|ref|YP_463155.1| superfamily II DNA/RNA helicase [Syntrophus aciditrophicus SB]
 gi|85724044|gb|ABC78987.1| superfamily II DNA and RNA helicases [Syntrophus aciditrophicus SB]
          Length = 572

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 127/366 (34%), Positives = 216/366 (59%), Gaps = 8/366 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61
           FA+  ++  ++  +   G+   TP+Q K IP+VL R  D+ G+AQTGTGKTA+F +P++ 
Sbjct: 4   FAEFEINTDIMKGLDGLGFSVMTPVQEKIIPIVLNRQTDLVGLAQTGTGKTAAFGIPLIQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
           + +    R++  + L+L PTREL  QVA +    G+    L +  + GG    +Q ++L 
Sbjct: 64  LTD---TRLKRTQALVLCPTRELCVQVAGDLNLMGRYVQKLKIVPVYGGASIVSQTEELR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA V++ TPGR+ D   RG + ++ +  +V+DEAD ML MGF   +  I ++ P ++ T
Sbjct: 121 KGAQVVVATPGRLHDLIRRGAVDLSGVSWVVLDEADEMLQMGFQDELNAILAVTPDSKNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+  ++ N++++P  I V   ++ AE ++H +    A++  +   L+++  
Sbjct: 181 LLFSATMPREVAAIAANYMKDPLEIIVGRRNAGAENVDHIYYVVSARHRYQA--LRRIAD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   IIFC  +     +   L + G+S  A+HG++ Q  R  ++  F+   I+++V
Sbjct: 239 MNPEL-YAIIFCRTRLETREIVDKLIEDGYSADALHGDLSQSQRDHVMHKFRSRNIRMLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV N+ +P  +  Y HR GRTGRAG+ G +  L+   +   I AI
Sbjct: 298 ATDVAARGLDVNDLTHVINYSLPEESSGYTHRSGRTGRAGKKGISIALIETREKHKIRAI 357

Query: 361 EKLIEK 366
           E+ ++K
Sbjct: 358 ERCLKK 363


>gi|83647394|ref|YP_435829.1| ATP-dependent RNA helicase DbpA [Hahella chejuensis KCTC 2396]
 gi|83635437|gb|ABC31404.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 493

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 220/392 (56%), Gaps = 13/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P ++  +   GY   TPIQ +++P +L   DV    +TG+GKTA+F L +L  
Sbjct: 37  FSSLSLHPGLLQNLSTLGYHSMTPIQAQSLPSILAGKDVIAQGKTGSGKTAAFGLGLLNK 96

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+    L+L PTRELA QVA    +  +  +N+ V  L GG+PF  Q   LE 
Sbjct: 97  LDIKRFCVQ---ALVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQIGSLEH 153

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ +H  +G L+++ +  LV+DEADRML+MGF   +  I   +P  RQTL
Sbjct: 154 GAHIVVGTPGRVEEHLRKGTLVLDQLHTLVLDEADRMLEMGFQAALDAIVEKMPAQRQTL 213

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  +++Q ++E  + NP  ++V +    A   ++ +     +       + +LL  
Sbjct: 214 LFSATYPNQIQSIAERVMLNPVMVKVESSHDNASIQQYYY---KVEGDTHRLEVLRLLLL 270

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ ++FCN K+    +   L   GFS  A+HG+++QR R + L  F   +  ++VA
Sbjct: 271 QYKPESTVVFCNTKRETQEVADMLVSHGFSAVALHGDLEQRDRDQTLVCFANKSASILVA 330

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V NF +    E ++HRIGRTGRAG  G A TL ++ ++  I  +E
Sbjct: 331 TDVAARGLDIDALDAVINFHIARDPEVHVHRIGRTGRAGASGVACTLFSESEMYKIGRLE 390

Query: 362 KLIEKKVDWLNGDLSSL------NPPLEKIDI 387
           +  E  V       +SL       PP+E + I
Sbjct: 391 EYQEIIVSAEPAPATSLLKNLAYKPPMETLQI 422


>gi|154315003|ref|XP_001556825.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
 gi|160358659|sp|A6RW56|RRP3_BOTFB RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|150848381|gb|EDN23574.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
          Length = 486

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 134/370 (36%), Positives = 215/370 (58%), Gaps = 14/370 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DLG+   +  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 62  FKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQA 121

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+K +        L+L PTRELA Q++  FE  G    +  A+++GG+    Q+  L +
Sbjct: 122 LLDKPQPLF----GLVLAPTRELAYQISQQFEALGSVIRVKCAVIVGGMDMVPQSIALGK 177

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+LDH    K   + +++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 178 KPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERRT 237

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETI--EHCFVATYAQYSKKCALLQQ 237
            LFSAT++ +++ +    L++P R+ +++    T  T+   + F+    + +    LL +
Sbjct: 238 YLFSATISSKVESLQRASLKDPLRVSISSNKYQTVSTLIQNYIFIPLIHKDTYLIYLLNE 297

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                   ++ IIF         +   L   GF    +HG + Q SR+  L+ F+ G+ +
Sbjct: 298 F-----AGQSAIIFTRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGSRE 352

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIP V  V N+DVP  ++ YIHR+GRT RAG+ G A ++V + D++  
Sbjct: 353 ILVATDVAARGLDIPSVDVVLNYDVPQDSKTYIHRVGRTARAGKSGHAISVVTQYDLEIF 412

Query: 358 DAIEKLIEKK 367
             IE  + KK
Sbjct: 413 MRIEAALGKK 422


>gi|91223278|ref|ZP_01258544.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
 gi|91192091|gb|EAS78354.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
          Length = 443

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 137/389 (35%), Positives = 209/389 (53%), Gaps = 10/389 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + K T IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKDLGLDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L+      + PR +IL PTRELA QV           +   AL++GG  F  Q K L
Sbjct: 61  HKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYEAALILGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGR+ DH     L ++ +E L++DEADRMLD+GF P ++ I       R 
Sbjct: 121 RRYPKFIVATPGRLADHLEHRSLYLDGLETLILDEADRMLDLGFAPELRRIHKAAKHRRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+   ++ +++   L  PKRI +   +   + I   F         K A+L +
Sbjct: 181 QTLMFSATLDHADVNEIAAEMLNAPKRIAIGVSNEEHKDITQKFYLC-DHLDHKEAILDR 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L S+   +  IIF   + +   L   L ++     A+ GN++Q  R  I+S F+    +
Sbjct: 240 VL-SEAEYRQVIIFTATRDDTERLTEKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLDI  V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D    
Sbjct: 299 ILVTTDVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSF 358

Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNPP 381
             +E  +++ +++     L G    L PP
Sbjct: 359 KRVEAYLQQDLEFSVFEDLKGKFKGLKPP 387


>gi|167525611|ref|XP_001747140.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774435|gb|EDQ88064.1| predicted protein [Monosiga brevicollis MX1]
          Length = 545

 Score =  242 bits (618), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 211/370 (57%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FAD G+   ++      G+ KPT IQ    P+V+Q  D+ G+A TG+GKT +F LP L
Sbjct: 129 MTFADAGVDADLMACT--KGFDKPTAIQSCCWPIVVQGQDLVGVAATGSGKTLAFTLPAL 186

Query: 61  TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKK 118
             ++  GR++   PR L+L PTRELA Q+    +   K+ N   A+ + GG     Q   
Sbjct: 187 QHVKGLGRSKTNCPRVLVLSPTRELALQINKVAQDAVKSLNQISAVCVYGGASKRDQLTA 246

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G +++I TPGR++D  N GKL ++++  LV+DEADRMLDMGF   I+ I   V   R
Sbjct: 247 LRQGCELVIATPGRLVDFLNDGKLDLSHVSYLVLDEADRMLDMGFERDIKLILGAVGTQR 306

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT  +E++ ++ N+++NP R+ V +   +A       V       K   LL  +
Sbjct: 307 QTLMFSATWPEEVRAIAANYMKNPLRVTVGSEELSANRNVKQVVDVVEPMEKDRRLL-DV 365

Query: 239 LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+     KN   +IF   KK    L   L+++ ++V  +HG+++Q  R   L  +K G  
Sbjct: 366 LRKHPASKNAKVLIFALYKKEAARLESFLQRKSYNVVGMHGDLNQGQREAALRAYKSGDS 425

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARGLD+  V  V N+  P   E+Y+HRIGRTGRAG  G A+T   + D  H
Sbjct: 426 HILIATDVAARGLDVKGVAVVINYTFPLTIEDYVHRIGRTGRAGATGIAYTFFTQHDKAH 485

Query: 357 IDAIEKLIEK 366
             A+  ++ +
Sbjct: 486 AGALGNVLRE 495


>gi|19075533|ref|NP_588033.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces pombe 972h-]
 gi|21542025|sp|O13370|DED1_SCHPO RecName: Full=ATP-dependent RNA helicase ded1; AltName:
           Full=Multicopy suppressor of overexpressed cyr1 protein
           2
 gi|2558968|gb|AAC04893.1| suppressor of uncontrolled mitosis [Schizosaccharomyces pombe]
 gi|3080516|emb|CAA18646.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces pombe]
 gi|3514095|gb|AAC34121.1| putative DEAD box RNA helicase Dep1 [Schizosaccharomyces pombe]
 gi|4582232|emb|CAB40192.1| putative RNA helicase [Schizosaccharomyces pombe]
          Length = 636

 Score =  242 bits (618), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 135/354 (38%), Positives = 203/354 (57%), Gaps = 21/354 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI-LEKG----------- 66
           +GY +PTP+Q  +IP+V    D+   AQTG+GKTA F+ P+L++  +KG           
Sbjct: 187 SGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAG 246

Query: 67  ---RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
              R R   P TLIL PTREL  Q+ +   K+     +    + GG    AQ +++++G 
Sbjct: 247 MGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGC 306

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----RQ 179
           D+L  TPGR++D  +RG++ + NI+ LV+DEADRMLDMGF P I++I      T    RQ
Sbjct: 307 DLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQ 366

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT   ++Q ++ +FL++   + V    ST+E I    V  + + S+K + L  +L
Sbjct: 367 TLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVV--HVEDSEKRSYLLDIL 424

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       +IF   K+    L   L    F   +IHG+  QR R + L  F+ G   +M
Sbjct: 425 HTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIM 484

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+ +A+RGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G+A     + +
Sbjct: 485 VATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNN 538


>gi|238784757|ref|ZP_04628760.1| ATP-dependent RNA helicase rhlB [Yersinia bercovieri ATCC 43970]
 gi|238714353|gb|EEQ06362.1| ATP-dependent RNA helicase rhlB [Yersinia bercovieri ATCC 43970]
          Length = 429

 Score =  242 bits (618), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 138/366 (37%), Positives = 212/366 (57%), Gaps = 11/366 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P V+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPLVIQALENKGFEYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY 70

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     ++GR +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 71  LLSNPAQEGR-QTNQPRALIMAPTRELAVQIHSDAESLSQITGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV 189

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R  +LFSAT++  +++++   + N + +EV     T   I+      Y    +K  LL
Sbjct: 190 DKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELF--YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K     +   L   G  V  + G++ Q+ R++IL +F +G 
Sbjct: 248 QTLIE-EEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYAL 366

Query: 356 HIDAIE 361
           ++ AIE
Sbjct: 367 NLPAIE 372


>gi|327268480|ref|XP_003219025.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 3 [Anolis
           carolinensis]
          Length = 709

 Score =  242 bits (618), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 143/392 (36%), Positives = 222/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 226 FSDVDMGEIIMGNIELTRYTRPTPVQKYAIPIIKDKRDLMACAQTGSGKTAAFLLPILSQ 285

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 286 IYTDGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSKVRPCVVY 345

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 346 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 405

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   RQT++FSAT   E+Q ++ +FL+    + V    ST+E I    V 
Sbjct: 406 RRIVEKDTMPPKGVRQTMMFSATFPKEIQMLARDFLEEYIFLAVGRVGSTSENITQKVV- 464

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + S K + L  LL +       ++F   KK   +L   L ++G++  +IHG+  QR 
Sbjct: 465 -WVEDSDKRSFLLDLLDATGKDSLTLVFVETKKGADSLEDFLFREGYACTSIHGDRSQRD 523

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 524 REEALHQFRSGRSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 583

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 584 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 615


>gi|302753758|ref|XP_002960303.1| hypothetical protein SELMODRAFT_75384 [Selaginella moellendorffii]
 gi|302767980|ref|XP_002967410.1| hypothetical protein SELMODRAFT_168957 [Selaginella moellendorffii]
 gi|300165401|gb|EFJ32009.1| hypothetical protein SELMODRAFT_168957 [Selaginella moellendorffii]
 gi|300171242|gb|EFJ37842.1| hypothetical protein SELMODRAFT_75384 [Selaginella moellendorffii]
          Length = 575

 Score =  242 bits (618), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 130/372 (34%), Positives = 204/372 (54%), Gaps = 11/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ L   ++  +    Y  PTPIQ + +P+ L   D+ G A+TG+GKTA+F +PM+  
Sbjct: 131 FEDMCLHANIMKDIAFHEYTNPTPIQAQAMPVALSGRDLLGCAETGSGKTAAFAIPMIQH 190

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
            + +        P  L+L PTRELA Q+      + ++ +    A+++GG     Q  +L
Sbjct: 191 CLAQPPIRHGDGPLALVLAPTRELAQQIEKEVRAFSRSTDGFKTAIVVGGTHIGEQRSEL 250

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  V++ TPGR +DH  +G   +  +  +V+DEADRMLDMGF+P I+ +   +P   Q
Sbjct: 251 RSGVQVVVATPGRFIDHLQQGNSSLLRVSYVVLDEADRMLDMGFLPQIKEVMQNLPKKHQ 310

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM +E++ +++ +L  P +++V   SS    +         +  K   LL  L+
Sbjct: 311 TLLFSATMPEEIEALAQEYLTKPVQVKVGKVSSPTSNVLQSL-EKVDEKDKIDYLLAMLV 369

Query: 240 QSQDTMKNG-------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           +S +  +         I+F  +K    ++  +L  QG    A+HG   Q  R   L +F+
Sbjct: 370 ESSNQSERAGQPPPLTIVFVERKARCDDVADALLAQGLKAAALHGGRTQGEREAALRDFR 429

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +G I ++VA+D+A+RGLD+  V HV N D+P   E+Y+HRIGRTGRAG  G+A +L    
Sbjct: 430 KGAISILVATDVASRGLDVTGVAHVVNLDLPKVMEDYVHRIGRTGRAGASGRATSLYTDR 489

Query: 353 DIKHIDAIEKLI 364
           D   +  I K I
Sbjct: 490 DAFLVAQIRKAI 501


>gi|294894930|ref|XP_002775023.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239880806|gb|EER06839.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 647

 Score =  242 bits (618), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 208/366 (56%), Gaps = 19/366 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +  L   ++  +  AG+V PTPIQ++  P+ L   D+ GIA+TG+GKT +F+LP +  
Sbjct: 201 FEEACLPDYIMVEIQKAGFVSPTPIQVQGWPVALSGRDMVGIAETGSGKTLAFLLPAVVH 260

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L+KG      P  L+L PTRELA Q+ +  +++G++  ++     GG+P   Q 
Sbjct: 261 INAQPYLQKGDG----PIVLVLAPTRELALQIKEECDRFGRSSRISNTCCYGGVPRGPQA 316

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+ G ++ I TPGR++D        +  +  LV+DEADRMLDMGF P ++ I S +  
Sbjct: 317 RMLQNGVEICIATPGRLIDFLESEVTNLRRVTYLVLDEADRMLDMGFEPQVRKIVSQIRP 376

Query: 177 TRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            RQTL++SAT   ++Q+++ +   + P  + V         I+  FV    + + K   L
Sbjct: 377 DRQTLMWSATWPKDVQQLARDLCNEEPVHVTVGQSGHACHNIQQ-FVEVVEE-NVKSERL 434

Query: 236 QQLLQSQDTMKNGI------IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           Q L+++  +   G+      IF + K+   ++   L + G+   +IHG+  Q  R  +L+
Sbjct: 435 QALMRAVASASGGVFDAKALIFTDTKRCADDITRVLRRDGWPALSIHGDKKQSERDWVLA 494

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G + +M+A+D+A+RGLD+ DV +V N+D P   E+Y+HRIGRTGRAG HG A++  
Sbjct: 495 EFKSGRMPIMIATDVASRGLDVKDVKYVINYDFPGTIEDYVHRIGRTGRAGAHGTAYSFF 554

Query: 350 AKEDIK 355
             +  K
Sbjct: 555 TADKAK 560


>gi|52425891|ref|YP_089028.1| ATP-dependent RNA helicase RhlB [Mannheimia succiniciproducens
           MBEL55E]
 gi|61214859|sp|Q65RG7|RHLB_MANSM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|52307943|gb|AAU38443.1| SrmB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 417

 Score =  242 bits (618), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 147/379 (38%), Positives = 223/379 (58%), Gaps = 7/379 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L+ KV+ A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FADLPLNAKVLEALESNGFEYCTPIQALSLPISLAGKDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +   +   PR LI+ PTRELA Q+A + E+  K   L  AL  GG  ++ Q K +E G
Sbjct: 71  LLEHPVKTNHPRALIMAPTRELAVQIAHDAERMVKTTGLKTALAYGGDGYDKQLKAIEAG 130

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ--T 180
           AD++I T GRI+D+  +  + +++I+++V+DEADRM D+GFI  I+ +    P  +Q  T
Sbjct: 131 ADIIIGTTGRIIDYVKQNIIALSHIQVVVLDEADRMFDLGFIKDIRYLMRKCPSPKQRLT 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLL 239
           LLFSAT++ ++++++   + +P+ +EV     T   I E  F   Y     K  LL  LL
Sbjct: 191 LLFSATLSYKVRELAFEDMNDPEYVEVEPLQKTGHRIKEELF---YPSNEDKMPLLITLL 247

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++  +  IIF N K     +   L   G  V  + G++ Q+ R+ +L  F +G + ++
Sbjct: 248 E-EEWPERCIIFANTKHQCEKIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGALDIL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGL IPDV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ A
Sbjct: 307 VATDVAARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPA 366

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+ I   +     D  SL
Sbjct: 367 IEEYIGHHIAVSQYDSDSL 385


>gi|326916320|ref|XP_003204456.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
           [Meleagris gallopavo]
          Length = 571

 Score =  242 bits (618), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 139/355 (39%), Positives = 207/355 (58%), Gaps = 17/355 (4%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL------ 63
           P ++  +   G+ KPTPIQ +  P++LQ  D+ GIAQTGTGKT ++++P    L      
Sbjct: 176 PDIMANIRKIGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQPIP 235

Query: 64  --EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             E+G      P  L+L PTRELA QV     KY      ++ +  GG   +AQ   + +
Sbjct: 236 KDERGG-----PGMLVLAPTRELALQVEAECLKYTYKGYKSICIYGGG-DRKAQINVVTK 289

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D++I TPGR+ D      + + +I  LV+DEAD+MLDMGF P I  I   V   RQT+
Sbjct: 290 GVDIVIATPGRLNDLQMNNFINLKSITYLVLDEADKMLDMGFEPQIMKILIDVRPDRQTV 349

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQ 240
           + SAT  D ++++++++L+NP  + V T    A  T+E   V    +  K  A ++  + 
Sbjct: 350 MTSATWPDGVRRLAKSYLRNPMIVYVGTLDLAAVNTVEQKVVVINEEEKK--AFMENFID 407

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S       IIF  +K    ++   L  +G  V ++HG+ +Q  R + L +FK+G ++++V
Sbjct: 408 SMKPKDKAIIFVGKKSTADDIASDLGVKGVPVQSLHGDREQCDREQALDDFKKGKVRILV 467

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           A+DLA+RGLD+ D+ HVFNFD P   E Y+HR+GRTGRAGR GKA TL+ K+D K
Sbjct: 468 ATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWK 522


>gi|254428748|ref|ZP_05042455.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
 gi|196194917|gb|EDX89876.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
          Length = 450

 Score =  242 bits (618), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 131/370 (35%), Positives = 214/370 (57%), Gaps = 5/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FADL L  +++ A+ +     PTP+Q   IP  L+  D+  +A+TG+GKTA+F+LPML  
Sbjct: 4   FADLNLHERLIKALGELEITTPTPVQTAAIPAALEGRDLRVVARTGSGKTAAFLLPMLHQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R R    R LIL PTRELA Q     E  G+   +   LL GG  F+ Q  K+ +
Sbjct: 64  LLQYSRPRTDT-RALILLPTRELAQQTLKQVEALGRYTFIKAELLTGGEDFKVQAAKMRK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             ++LI TPGR+++H + G LL+ ++E+LV+DE+DRMLDMGF   +  + +     RQTL
Sbjct: 123 NPEILIGTPGRLIEHLDAGNLLLQDLEMLVLDESDRMLDMGFNDDVLRLAAECRAERQTL 182

Query: 182 LFSATM-TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT   + ++ +  + L++PK + +++     E++    + T      K  L+Q LL 
Sbjct: 183 LFSATTGGNAMENMISSVLRDPKSLVLDSVRDLNESVSQQII-TADDVKHKERLVQWLL- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +T +  ++F N ++    L   L      V  +HG  DQ+ R   +   K G ++++V
Sbjct: 241 ANETYEKAVVFTNTREQADRLGGVLVASNLKVFVLHGEKDQKDRKLAMDRLKAGAVKVLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ + ++  V NFD+P   + Y+HRIGRTGR G  G A +L+A  +   +  I
Sbjct: 301 ATDVAARGIHVDNLDLVINFDMPRSGDEYVHRIGRTGRVGGEGTAISLIAAHEWNLMAGI 360

Query: 361 EKLIEKKVDW 370
           ++ + +  ++
Sbjct: 361 QRYLRQNFEY 370


>gi|242012580|ref|XP_002427009.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212511247|gb|EEB14271.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 538

 Score =  242 bits (618), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 135/352 (38%), Positives = 206/352 (58%), Gaps = 12/352 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + GL   ++  +    Y KPTPIQ   IP+++   D+ G AQTG+GKTA+F++P++  
Sbjct: 133 FNEAGLCSTLINLINKCQYHKPTPIQKHCIPIIMSGRDLMGCAQTGSGKTAAFLIPIINK 192

Query: 62  ILEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +LEK     ++    P  +I+ PTREL  Q+ +   K+ +   L VAL  GG     Q +
Sbjct: 193 LLEKNQIMSKSSFCTPEVIIMTPTRELTIQIFEEARKFSRGTFLKVALTYGGTAVFHQVE 252

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI----TSL 173
           K++ G ++L+ TPGR+LD   RG +  +  E L++DEADRMLDMGFI  I+ +    T  
Sbjct: 253 KIKNGCNILVATPGRLLDFVQRGIIDFSMTEFLILDEADRMLDMGFISEIKKMINHPTMK 312

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
               RQTL+FSAT   E+Q +++ FL N   + V         +   F +  +++ K+  
Sbjct: 313 SSSQRQTLMFSATFPSEVQHLAKTFLNNYLFVVVGIVGGACSDVVQKFFSV-SKFQKRNK 371

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L++ LL+S  + K  ++F  QK+    +   L ++ F   +IHG+ DQR R + L +FK 
Sbjct: 372 LIE-LLESNGSSK-CLVFVEQKRTTDFIATFLCEKNFPATSIHGDRDQREREEALRDFKT 429

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           G + ++VA+ +AARGLDI +V HV NFD+P   + Y+HRIGRTGR G  G A
Sbjct: 430 GKMDILVATSVAARGLDIKNVAHVVNFDLPKTIDEYVHRIGRTGRVGNRGLA 481


>gi|74695852|sp|Q75EW9|RRP3_ASHGO RecName: Full=ATP-dependent rRNA helicase RRP3
          Length = 487

 Score =  242 bits (618), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 146/380 (38%), Positives = 215/380 (56%), Gaps = 15/380 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L P+++ A  +  + KPTPIQ K IP  LQ  D+ G+AQTG+GKTA+F +P+L  
Sbjct: 68  FRELDLVPELIEACDNLNFTKPTPIQSKAIPPALQGKDIIGLAQTGSGKTAAFAIPILNR 127

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +         IL PTRELA Q+ + F+  G    +    ++GG+    Q + L R 
Sbjct: 128 LWHDQQPYY---ACILAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRK 184

Query: 123 ADVLICTPGRILDHFNRGK--LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQ 179
             ++I TPGR++DH    K    +   + LV+DEADR+L+M F P +  I   +P   R 
Sbjct: 185 PHIIIATPGRLMDHLEVHKRGFALRKQQFLVMDEADRLLNMKFGPVLDRILKNIPTKVRT 244

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT ++ K+    L N  +  V+    T +T+    +        K   L  LL
Sbjct: 245 TYLFSATMTSKIDKLQRASLTNTVKCAVSNKYQTVDTLVQTLIVVPGGL--KNTFLIYLL 302

Query: 240 QSQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++   K  I+F   K N   +  LC+ LE   FS  A+HG+++Q  R   L  FK G  
Sbjct: 303 -NEFIGKTTIVFTRTKANAERISGLCNLLE---FSATALHGDLNQNQRTGALDLFKAGKK 358

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV++ D++ 
Sbjct: 359 SILVATDVAARGLDIPSVDLVINYDIPVDSKSYIHRVGRTARAGRSGKSVSLVSQYDLEL 418

Query: 357 IDAIEKLIEKKVDWLNGDLS 376
           I  IE+++ KK+   N D S
Sbjct: 419 ILRIEEVLGKKLPKENVDKS 438


>gi|320589963|gb|EFX02419.1| RNA helicase [Grosmannia clavigera kw1407]
          Length = 537

 Score =  242 bits (618), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 136/375 (36%), Positives = 208/375 (55%), Gaps = 14/375 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 119 FDEAGFPRYVIDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPSIVH 178

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 179 INAQPLLAPGDG----PIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGPQI 234

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 235 RDLSRGVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKILSQIRP 294

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E++ ++ +FL +  ++ + +   +A       V   ++  K+  +L+
Sbjct: 295 DRQTLMWSATWPKEVRNLAADFLTDFIQVNIGSLDLSANHRITQIVEVVSEGDKRDRMLK 354

Query: 237 QLLQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L +  D  +     +IF   K+   ++   L + G+   +IHG+  Q  R  +L  FK 
Sbjct: 355 HLEKVMDDKEKENKVLIFTGTKRVADDITRLLRQDGWPALSIHGDKQQNERDWVLDQFKT 414

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +MVA+D+A+RG+D+ ++ HV N+D PN +E+YIHRIGRTGRAG +G A TL   ++
Sbjct: 415 GKSPIMVATDVASRGIDVRNITHVINYDYPNNSEDYIHRIGRTGRAGANGTAITLFTTDN 474

Query: 354 IKHI-DAIEKLIEKK 367
            K   D +  L E K
Sbjct: 475 AKQARDLVSVLQEAK 489


>gi|256052028|ref|XP_002569581.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|227284279|emb|CAY16829.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 840

 Score =  242 bits (618), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 141/395 (35%), Positives = 221/395 (55%), Gaps = 19/395 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA LGL   ++ A+  AGY +PTPIQ + +PL+L   DV GI +TG+GKTA+F+ P++  
Sbjct: 299 FAHLGLDEPLMEAIRKAGYTQPTPIQAQAVPLILAGRDVIGIGKTGSGKTAAFLWPLIIH 358

Query: 62  ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++   ++   P  +I  PTRELA Q+    +K  K YNLTV    GG     Q K  E
Sbjct: 359 IMDQPELKLGDGPIGVICAPTRELALQIYSEAKKLAKVYNLTVVCAYGGGSLWEQQKACE 418

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G ++L+CTPGR++D   +    +  +  LV DEAD+M ++GF P +++I + V   RQT
Sbjct: 419 AGCEILVCTPGRLIDIVKKKSTNLRRVTYLVFDEADKMFNLGFEPQVRSIANHVRPDRQT 478

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    L++++ + L +P RI         E I    V  + +  +K   L + L 
Sbjct: 479 LLFSATFKRRLERLARDILLDPVRIIQGELGEANEDITQ-HVEIFDKIEQKWDWLTRNLV 537

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T  + +IF  +K +   +   L+ +   V  IHG++ Q  R  ++  FK     ++V
Sbjct: 538 RLTTEGSVLIFVTRKVHSEEVAQKLKSRDLKVLLIHGDMHQSDRNTVIQAFKRQEAPILV 597

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL-VAKED------ 353
           A+D+A+RGLDIP + +V N++V    + + HRIGRTGRAG  G A+TL VA +D      
Sbjct: 598 ATDVASRGLDIPSIHNVINYEVARDIDTHTHRIGRTGRAGAKGTAYTLFVAGKDPVDFAA 657

Query: 354 --IKHIDAIEKLIEK-------KVDWLNGDLSSLN 379
             ++H+++  + + +       K +W   + SSLN
Sbjct: 658 CLVQHLESGSQKVPQRLLDIALKCNWFANNRSSLN 692


>gi|302758696|ref|XP_002962771.1| hypothetical protein SELMODRAFT_165331 [Selaginella moellendorffii]
 gi|300169632|gb|EFJ36234.1| hypothetical protein SELMODRAFT_165331 [Selaginella moellendorffii]
          Length = 786

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 130/369 (35%), Positives = 220/369 (59%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLSP +  A+   GY  PTPIQ KT+PL+L  +DV  +A+TG+GKTA+F++PML  
Sbjct: 26  FESLGLSPPIYQAIRKKGYSVPTPIQRKTLPLILAGNDVVAMARTGSGKTAAFLIPML-- 83

Query: 63  LEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            EK RA    P  R LIL PTRELA Q     ++ G+N +L + +L+GG   E Q ++L 
Sbjct: 84  -EKLRAHSPKPGARALILSPTRELALQTFKFCKELGRNTDLRITVLVGGDSMETQFEQLS 142

Query: 121 RGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  D+LI TPGR++ H +  + + + ++E +V DEADR+ +MGF   ++ I + +   RQ
Sbjct: 143 KNPDILIATPGRLMHHLSEVEGMSLKSVEYVVFDEADRLFEMGFAEQLRQILTQLHELRQ 202

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT+   L   ++  L++P  + ++T +  +  ++  F  T  +  K   L+  L 
Sbjct: 203 TLLFSATLPRLLADFAKAGLKDPLTVRLDTETKISPDLKLAFF-TMRKEEKLACLVHLLR 261

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +     +  ++F + K +V  L   L+ +G  +  ++G +DQ +R   ++ F+     ++
Sbjct: 262 EVVSAEQQTVVFVSTKHHVEFLFEVLKSEGIDLAVVYGAMDQTARKINVAKFRARKTMIL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+AARG+DIP + +V NFD P + + ++HR+GR  RAGR G A++ +  +++ ++  
Sbjct: 322 LVTDVAARGIDIPLLDNVVNFDFPAKPKLFVHRVGRAARAGRTGTAYSFLTSDELPYLLD 381

Query: 360 IEKLIEKKV 368
           +   + K V
Sbjct: 382 LHLFLSKPV 390


>gi|170046412|ref|XP_001850760.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167869183|gb|EDS32566.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 438

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 216/372 (58%), Gaps = 7/372 (1%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           +  P+ IQ + IPL LQ  DV G+A+TG+GKT +F LP+L  L +   R      +IL P
Sbjct: 16  WKAPSKIQREAIPLALQGKDVIGLAETGSGKTGAFALPILQALLENPQRYF---AVILTP 72

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TRELA Q+++ FE  G +  +   +++GG+   +Q  +L R   ++I TPGR++DH    
Sbjct: 73  TRELAYQISEQFEALGASIGVKCCVIVGGMDMVSQALQLARKPHIIIATPGRLVDHLENT 132

Query: 141 KLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
           K   +  ++ LV+DEADR+L++ F   +  I  ++P  R+T LFSATMT +++K+    L
Sbjct: 133 KGFNLKAVKYLVMDEADRILNLDFEVELDKILKVLPRERRTFLFSATMTKKVKKLERASL 192

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
           ++P ++EV++   T E +   +V   A++ K   L+  L  ++    + +IFC+   N V
Sbjct: 193 KDPVKVEVSSKYQTVEKLLQYYVFIPAKF-KDVYLVHIL--NELAGNSFMIFCSTCNNTV 249

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
                L   G +   +HG + Q  R+  L+ FK    Q+++++D+A+RGLDIP V  V N
Sbjct: 250 RTALMLRALGLAAVPLHGQMSQNKRLASLNKFKGKDRQILISTDVASRGLDIPHVDVVLN 309

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           FD+P  +++YIHR+GRT RAGR GKA T V + D++    IE L+ KK+     +   + 
Sbjct: 310 FDIPTHSKDYIHRVGRTARAGRAGKAVTFVTQYDVELYQRIEHLLGKKLPEFKCEEDEVM 369

Query: 380 PPLEKIDIAQHN 391
              E++  AQ  
Sbjct: 370 ALQERVGEAQRT 381


>gi|327268478|ref|XP_003219024.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Anolis
           carolinensis]
          Length = 706

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 143/392 (36%), Positives = 222/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 223 FSDVDMGEIIMGNIELTRYTRPTPVQKYAIPIIKDKRDLMACAQTGSGKTAAFLLPILSQ 282

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 283 IYTDGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSKVRPCVVY 342

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 343 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 402

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   RQT++FSAT   E+Q ++ +FL+    + V    ST+E I    V 
Sbjct: 403 RRIVEKDTMPPKGVRQTMMFSATFPKEIQMLARDFLEEYIFLAVGRVGSTSENITQKVV- 461

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + S K + L  LL +       ++F   KK   +L   L ++G++  +IHG+  QR 
Sbjct: 462 -WVEDSDKRSFLLDLLDATGKDSLTLVFVETKKGADSLEDFLFREGYACTSIHGDRSQRD 520

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 521 REEALHQFRSGRSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 580

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 581 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 612


>gi|322797566|gb|EFZ19610.1| hypothetical protein SINV_13775 [Solenopsis invicta]
          Length = 692

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 136/359 (37%), Positives = 209/359 (58%), Gaps = 7/359 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G++ K +  +   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 32  WAQCGVTKKELEVLKKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFRH 91

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL++   A    P  LI+ PTREL  Q+  + +K+ K+  L+   + GG     Q  +L+
Sbjct: 92  ILDQPPLADGDGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHVCVYGGTGISEQIAELK 151

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   V   
Sbjct: 152 RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIMENVRPD 211

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT   +++ ++   L  P  ++V   S   + +E   V    +  K   LL+ 
Sbjct: 212 RQTVLFSATFPRQMEALARRILTRPVEVQVGGRSVVCKDVEQ-HVVVLEEDQKFYKLLEI 270

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   QD   + IIF ++++N   L   L K  +S  ++HG IDQ  R   + +FK G  +
Sbjct: 271 LGHYQDK-GSTIIFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTILDFKAGRTK 329

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           L+VA+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  E  ++
Sbjct: 330 LLVATSVAARGLDVKHLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITSEQERY 388


>gi|194433859|ref|ZP_03066133.1| ATP-independent RNA helicase DbpA [Shigella dysenteriae 1012]
 gi|194417962|gb|EDX34057.1| ATP-independent RNA helicase DbpA [Shigella dysenteriae 1012]
 gi|320180214|gb|EFW55149.1| ATP-dependent RNA helicase DbpA [Shigella boydii ATCC 9905]
          Length = 457

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 138/377 (36%), Positives = 218/377 (57%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSTRVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
            ++W    ++S   PLE
Sbjct: 363 TLNWQTPPVNSSIVPLE 379


>gi|42527612|ref|NP_972710.1| DEAD-box ATP dependent DNA helicase [Treponema denticola ATCC
           35405]
 gi|41818440|gb|AAS12629.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Treponema
           denticola ATCC 35405]
          Length = 570

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 138/365 (37%), Positives = 207/365 (56%), Gaps = 11/365 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59
           + F +LGL   V+ AV   G+ +PTPIQ+  IP +L    +V   A+TGTGKTA+F LP+
Sbjct: 3   ITFKELGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGLPL 62

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  L     +VR    LIL PTRELA QVA   E +       +A + GG     Q + L
Sbjct: 63  VQELRSNTGKVR---ALILVPTRELAVQVAGELESFRIEEYPRIATVYGGAAIGPQLRSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++++ TPGRI+DH  RG L + +IE  ++DEAD ML+MGFI  I+NI S      +
Sbjct: 120 KTGVEIVVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLNMGFIEDIENIFSKANPEAR 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  ++  ++ +F+ + + +E       A   E  F     +   K   L +L+
Sbjct: 180 VLMFSATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVV--REGDKTEALVRLI 237

Query: 240 QSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              DT  N  G++FC  K +  ++   L+++ +   A+HG+I Q  R KIL  F+    +
Sbjct: 238 ---DTSPNFYGLVFCQTKIDADDVAKELDERHYEAAALHGDIPQSQREKILERFRSKKTR 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  + HV N+ +P     Y HRIGRTGRAG  G A + V   ++K I
Sbjct: 295 ILVATDVAARGIDIEGISHVVNYAIPYDGPTYTHRIGRTGRAGAAGVAVSFVRPNEVKRI 354

Query: 358 DAIEK 362
           + + K
Sbjct: 355 EYLRK 359


>gi|2992158|dbj|BAA25324.1| Moc2 RNA helicase [Schizosaccharomyces pombe]
          Length = 636

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 135/354 (38%), Positives = 203/354 (57%), Gaps = 21/354 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI-LEKG----------- 66
           +GY +PTP+Q  +IP+V    D+   AQTG+GKTA F+ P+L++  +KG           
Sbjct: 187 SGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAG 246

Query: 67  ---RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
              R R   P TLIL PTREL  Q+ +   K+     +    + GG    AQ +++++G 
Sbjct: 247 MGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGC 306

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----RQ 179
           D+L  TPGR++D  +RG++ + NI+ LV+DEADRMLDMGF P I++I      T    RQ
Sbjct: 307 DLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQ 366

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT   ++Q ++ +FL++   + V    ST+E I    V  + + S+K + L  +L
Sbjct: 367 TLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVV--HVEDSEKRSYLLDIL 424

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       +IF   K+    L   L    F   +IHG+  QR R + L  F+ G   +M
Sbjct: 425 HTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIM 484

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+ +A+RGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G+A     + +
Sbjct: 485 VATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNN 538


>gi|302795308|ref|XP_002979417.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
 gi|300152665|gb|EFJ19306.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
          Length = 749

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 132/361 (36%), Positives = 202/361 (55%), Gaps = 1/361 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L +S  ++ A    GY +PTPIQ   IPL L   D+CG A TG+GKTA+F LP+L  
Sbjct: 119 FIELNVSRPLLRACDALGYRQPTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPILER 178

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     R+   R LI+ PTRELA Q+    EK  +  ++  +L++GG+  + Q   L   
Sbjct: 179 LLFRPRRIPAIRVLIITPTRELAVQLHSMIEKLAQFTDIRCSLVVGGLSSKVQEVALRTH 238

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D+++ TPGR++DH  N   + +  + ILV+DEADR+L++GF   I  +  L P  RQT+
Sbjct: 239 PDIVVATPGRMIDHLRNTQSVGLEELAILVLDEADRLLELGFREEIHELVKLCPSRRQTM 298

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMTDE+ ++ +  L++P R+  +  +    T+    +   A +      +   L S
Sbjct: 299 LFSATMTDEVSELIKLSLKSPVRLSADPSTERPSTLTEEVIRIRAGHEGDKEAIVLSLCS 358

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      IIF   K     L       G     +HGN+ Q  R++ L  F++  +  ++A
Sbjct: 359 RSLKSKTIIFSGTKVEAHRLKILFGLSGLKSAELHGNLTQAQRLEALEAFRKQEVDFLIA 418

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V  V N + P   + Y+HR+GRT RAGRHG++ TL+ ++D   + A+ 
Sbjct: 419 TDVAARGLDIIGVESVINLECPKEIKTYVHRVGRTARAGRHGRSVTLMTEQDRLLLKAVA 478

Query: 362 K 362
           K
Sbjct: 479 K 479


>gi|193066966|ref|ZP_03047935.1| ATP-independent RNA helicase DbpA [Escherichia coli E110019]
 gi|192959556|gb|EDV89990.1| ATP-independent RNA helicase DbpA [Escherichia coli E110019]
          Length = 457

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 135/364 (37%), Positives = 213/364 (58%), Gaps = 8/364 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEAHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDW 370
           K++W
Sbjct: 363 KLNW 366


>gi|126696546|ref|YP_001091432.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9301]
 gi|126543589|gb|ABO17831.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9301]
          Length = 593

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 134/371 (36%), Positives = 212/371 (57%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + G +  ++ ++++ GY  PTPIQ   IP ++   D+ G AQTGTGKTA+F LP++  
Sbjct: 53  FLEFGFNQSILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEK 112

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L   +      + L++ PTRELA QVA++F+ Y     N     + GG  +  Q   L+R
Sbjct: 113 LTDNKEL--NAKVLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKR 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DV++ TPGRI+DH  +G   + +I  LV+DEAD ML+MGF+  I+ I   +P  +Q +
Sbjct: 171 KVDVVVGTPGRIMDHIRQGTFKIKDINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMV 230

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +E++ +++ +L +P  I + +     + I   F+  Y Q   K   L+++L+ 
Sbjct: 231 LFSATMPNEIRNIAKKYLNDPAEILIKSVKKETQLISQKFL--YVQRHHKLDALKRILEL 288

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  IIF   K    ++  +LE  G +V  ++G+I Q  R   +   K+G I ++VA
Sbjct: 289 NN--EGVIIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVA 346

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D P   E Y HRIGRTGRAGR G+A   V   +   +  +E
Sbjct: 347 TDVAARGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNLREKHFLRNLE 406

Query: 362 KLIEKKVDWLN 372
                K++ +N
Sbjct: 407 NSTRTKIEEIN 417


>gi|325474437|gb|EGC77624.1| DEAD/DEAH box family ATP-dependent RNA helicase [Treponema
           denticola F0402]
          Length = 570

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 138/365 (37%), Positives = 207/365 (56%), Gaps = 11/365 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59
           + F +LGL   V+ AV   G+ +PTPIQ+  IP +L    +V   A+TGTGKTA+F LP+
Sbjct: 3   ITFKELGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGLPL 62

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  L     +VR    LIL PTRELA QVA   E +       +A + GG     Q + L
Sbjct: 63  VQELRSNTGKVR---ALILVPTRELAVQVAGELESFRIEEYPRIATVYGGAAIGPQLRSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++++ TPGRI+DH  RG L + +IE  ++DEAD ML+MGFI  I+NI S      +
Sbjct: 120 KTGVEIVVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLNMGFIEDIENIFSKANPEAR 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  ++  ++ +F+ + + +E       A   E  F     +   K   L +L+
Sbjct: 180 VLMFSATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVV--REGDKTEALVRLI 237

Query: 240 QSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              DT  N  G++FC  K +  ++   L+++ +   A+HG+I Q  R KIL  F+    +
Sbjct: 238 ---DTSPNFYGLVFCQTKIDADDVAKELDERHYEAAALHGDIPQSQREKILERFRSKKTR 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  + HV N+ +P     Y HRIGRTGRAG  G A + V   ++K I
Sbjct: 295 ILVATDVAARGIDIEGISHVVNYAIPYDGPTYTHRIGRTGRAGAAGVAVSFVRPNEVKRI 354

Query: 358 DAIEK 362
           + + K
Sbjct: 355 EYLRK 359


>gi|295097891|emb|CBK86981.1| Superfamily II DNA and RNA helicases [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 442

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 142/388 (36%), Positives = 220/388 (56%), Gaps = 8/388 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ A+   G+ +PT IQ   IP  L+  DV G A TGTGKTA+++LP+L  
Sbjct: 6   FSELELDESLLNALESKGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPVLQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVA++  +   N +L +A + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAMQVAEHARELAANTHLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I     +  QT+
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIELIAGETRWRNQTM 185

Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVN-TPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LFSAT+  D ++  +E  L++P  +EV+ TPS+      H +         K  LL+ LL
Sbjct: 186 LFSATLEGDAIKDFAERLLEDP--VEVSATPSTRERKKIHQWYYRADNLEHKVELLKHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++  +  I+F  +++ V  L   L   G + C + G + Q  R + +    +G + ++
Sbjct: 244 KQEEATRT-IVFVRKRERVHELAEMLRNAGINNCYLEGEMAQVKRTEGIKRLTDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIPDV HV NFD+P   + Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGIAISLVEAHDHLLLQK 362

Query: 360 IEKLIEK--KVDWLNGDLSSLNPPLEKI 385
           I + +E+  K   ++G   +   P EK+
Sbjct: 363 IGRYVEEPLKARVIDGLRPTTRAPSEKM 390


>gi|291006385|ref|ZP_06564358.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 467

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 134/347 (38%), Positives = 199/347 (57%), Gaps = 13/347 (3%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE-KG 66
           ++P++V A+ +AG      IQ  T+PL L+  D+ G A+TGTGKT  F +P+L  L+  G
Sbjct: 1   MNPEIVRALGEAGIEHTFAIQELTLPLALRGEDLIGQARTGTGKTLGFGVPVLHRLQVPG 60

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
                 P+ L++ PTREL  QVA +    GK+  +    + GG P+E Q + L  G D++
Sbjct: 61  DG---TPQALVVVPTRELCVQVARDLTDAGKHLGIRTLAVYGGRPYEQQIEALRSGVDLV 117

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+LD   +  L++  +  LV+DEAD MLD+GF+P I+ I  +VP  RQT+LFSAT
Sbjct: 118 IGTPGRLLDLAEQQHLVLGKVRALVLDEADEMLDLGFLPDIERILHMVPEQRQTMLFSAT 177

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
           M   +  ++  FL+ P  I      + A           A    K  L+ + +Q+     
Sbjct: 178 MPGPIITLARTFLRQPTHIRAEQADAGAIHERTKQFVYRAHAMDKTELIARAMQA----- 232

Query: 247 NG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           NG    +IF   K+    L   L ++GF+  A+HG++ Q +R + L  F+ G + ++VA+
Sbjct: 233 NGRGLSMIFTRTKRTAQKLSDELTERGFAAAAVHGDLGQGAREQALRAFRSGKVDILVAT 292

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+  V HV N   P+  + Y+HRIGRTGRAGR G A TLV
Sbjct: 293 DVAARGIDVGGVTHVVNLQCPDDEKTYVHRIGRTGRAGREGVAITLV 339


>gi|254584210|ref|XP_002497673.1| ZYRO0F10934p [Zygosaccharomyces rouxii]
 gi|238940566|emb|CAR28740.1| ZYRO0F10934p [Zygosaccharomyces rouxii]
          Length = 603

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 140/343 (40%), Positives = 195/343 (56%), Gaps = 19/343 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT---------ILEKGRA- 68
           A +VKPTP+Q  +IP+V  + D+   AQTG+GKT  F+ P+L+         I E  R+ 
Sbjct: 151 AHFVKPTPVQKYSIPIVANKRDLMACAQTGSGKTGGFLFPVLSESFFTGPSEIPEAARSS 210

Query: 69  --RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
             R   P  ++L PTRELA Q+ D  +K+     +   ++ GG    +Q + L+RG D+L
Sbjct: 211 YMRKAFPTAVVLAPTRELATQIFDEAKKFTYRSWVRPTVVYGGSDVGSQMRDLDRGCDLL 270

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLL 182
           + TPGR+ D   RGK+ +  ++ LV+DEADRMLDMGF P I+NI           RQTL+
Sbjct: 271 VATPGRLNDLLERGKISLAKVKYLVLDEADRMLDMGFEPQIRNIVEGCDMPGVDQRQTLM 330

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT   ++Q ++ +FL +   + V    ST+E I    V       KK ALL  L  S 
Sbjct: 331 FSATFPVDIQHLARDFLSDYIFLSVGRVGSTSENITQR-VLYVEDEDKKSALLDLLSASS 389

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   +IF   K+    L   L  Q F   AIHG+  Q  R + L +FK G   L+VA+
Sbjct: 390 GGLT--LIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALGSFKTGKADLLVAT 447

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
            +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G A
Sbjct: 448 AVAARGLDIPNVTHVINYDLPGDVDDYVHRIGRTGRAGNTGLA 490


>gi|330842567|ref|XP_003293247.1| hypothetical protein DICPUDRAFT_41749 [Dictyostelium purpureum]
 gi|325076448|gb|EGC30233.1| hypothetical protein DICPUDRAFT_41749 [Dictyostelium purpureum]
          Length = 551

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 137/381 (35%), Positives = 209/381 (54%), Gaps = 15/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F   G    ++ A+       PTPIQ + IP+ L   D+  IA+TG+GKTA+F+ P +  
Sbjct: 110 FGHYGFENLLLQAISKQNIDTPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSIPH 169

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LEKG      P  L L PTRELA Q+     KY K + L   +L GG+  + Q 
Sbjct: 170 IMDQPYLEKGDG----PIALFLAPTRELAQQIYLETLKYSKYFKLRTTVLYGGVSKQQQC 225

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K+L+ G ++++ TPGR++D        +N +  LV+DEAD+M D GF P + +I + V  
Sbjct: 226 KELKAGCEIVVSTPGRLIDMIKLKATKLNRVTYLVLDEADKMFDFGFGPQVLSIVNHVRP 285

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT    ++  + + L +P +I +    S    I        ++  K   L+ 
Sbjct: 286 DRQTLLFSATFKQNVEDFARSILTDPIKISIGQAGSANSDITQIVQVLKSESEKWSWLID 345

Query: 237 QL--LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            L  L +Q ++   +IF + K +V  L  +L   GF  C+IHG+ +Q  R + +  FKEG
Sbjct: 346 NLPNLLNQGSV---LIFVSMKASVEELSKNLTNFGFKTCSIHGDKNQYERSQTIQTFKEG 402

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + +++A+D+AARGLDIP + +V NFD     E++ HRIGRTGRAG  G A+TL+  +D+
Sbjct: 403 KVNILIATDVAARGLDIPLIKNVINFDPSRDIESHTHRIGRTGRAGAKGDAYTLITPKDV 462

Query: 355 KHIDAIEKLIEKKVDWLNGDL 375
                + K +E    +++ DL
Sbjct: 463 NFAADLVKNLEGANQYVSSDL 483


>gi|145355346|ref|XP_001421924.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582163|gb|ABP00218.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 421

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 144/363 (39%), Positives = 205/363 (56%), Gaps = 24/363 (6%)

Query: 10  PKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK--- 65
           PK + A L A GY  PTPIQ +  P++L+  DV  IA+TG+GKT  F+LP L  + +   
Sbjct: 11  PKPLRAALKAQGYDAPTPIQAEAWPILLKGKDVVAIAKTGSGKTCGFLLPALASIMQLLD 70

Query: 66  GRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
           GR R     P  ++L PTRELA Q+ D   K+        A+L GG     Q + L  GA
Sbjct: 71  GRWRPGAVTPTVIVLAPTRELAIQIHDECAKFCPAAGCRSAVLYGGAAKGDQLRALRSGA 130

Query: 124 DVLICTPGRILDHFN-----RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           DV++ TPGR+ D           +       +V+DEADRMLDMGF P I+ I  L P  R
Sbjct: 131 DVVVATPGRLNDFLEPPPGFTAPVSAVKASYVVLDEADRMLDMGFEPQIKKIFKLCPSAR 190

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPS-------STAETIEHCFVATYAQYSKK 231
           QT++F+AT    +QK++++F   P  I++ +         S  +T+E   +    ++ + 
Sbjct: 191 QTVMFTATWPKAVQKIADSFTTKPIHIQIGSGGDKLTANKSITQTVE--VLEEEEKFDRC 248

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC-AIHGNIDQRSRMKILSN 290
            A+L++ L   DT    I+F   K+    L   L++ GFS   AIHG+ DQ  R  +L N
Sbjct: 249 VAILKKELGKDDTC---IMFAGTKRRCDFLDRRLKQSGFSSAGAIHGDKDQYEREMVLDN 305

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+D+AARGLDIP V  V  +D P + E+Y+HRIGRTGRAG+ GKAFT   
Sbjct: 306 FRRGRGNILVATDVAARGLDIPGVAAVLVYDFPLQVEDYVHRIGRTGRAGKEGKAFTFFT 365

Query: 351 KED 353
           K++
Sbjct: 366 KDN 368


>gi|124430723|ref|NP_001037582.1| DEAD box polypeptide 5 isoform 1 [Bombyx mori]
 gi|95102742|gb|ABF51312.1| DEAD box polypeptide 5 isoform 1 [Bombyx mori]
          Length = 539

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 129/383 (33%), Positives = 214/383 (55%), Gaps = 9/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +      V   V   GY +PTPIQ +  P+ +   ++ G+AQTG+GKT +++LP +  
Sbjct: 109 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 168

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA Q+      +G    +    + GG P   Q + LE
Sbjct: 169 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 228

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 229 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT 288

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALL 235
           L++SAT   E++K++E++L +  +I + +   +A     + ++ C    + + +K   LL
Sbjct: 289 LMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDIC--QEHEKENKLNVLL 346

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q++ QSQ+     IIF   K+   N+  ++ + G+    +HG+  Q+ R ++L  FKEG 
Sbjct: 347 QEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGR 406

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+D+AARGLD+  + +V NFD PN +E+YIHRIGRTGR+   G ++      + +
Sbjct: 407 ASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSR 466

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
               +  ++++    ++  L S+
Sbjct: 467 QAKDLVSVLQEANQIISPQLQSM 489


>gi|312373386|gb|EFR21141.1| hypothetical protein AND_17503 [Anopheles darlingi]
          Length = 615

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 134/356 (37%), Positives = 210/356 (58%), Gaps = 9/356 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G    ++ A+  + Y +PTPIQ + IP  L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 93  FAHFGFDESLMKAIRKSEYSQPTPIQAQAIPAALGGRDIIGIAKTGSGKTAAFLWPMLVH 152

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R       P  LIL PTREL+ Q+    +K+GK YN++V    GG     Q+K LE
Sbjct: 153 IMDQRELGPGDGPIGLILAPTRELSLQIYGEAKKFGKVYNISVCCCYGGGSKWEQSKALE 212

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA++++ TPGR++D        +  +  LV+DEAD+M +MGF P +++I + +   RQT
Sbjct: 213 QGAEIVVATPGRMIDMVKMKATNLRRVTYLVLDEADKMFNMGFEPQVRSICNHIRPDRQT 272

Query: 181 LLFSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT    ++K++ + L +P R I  +   + A+  +   +    Q +K   LL  L+
Sbjct: 273 LLFSATFKKRVEKLARDVLTDPVRIIHGDLGEANADVAQRVVLLPNVQ-AKWNWLLANLV 331

Query: 240 Q--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           Q  S+ ++   +IF  +K +   + +SL  +   V  +HG++DQ  R  +++ FK   + 
Sbjct: 332 QMLSEGSV---LIFVTKKADAEQVANSLRVKENEVVLLHGDMDQSERNSVITRFKRREVD 388

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +MVA+D+AARGLDIP +  V N+D+    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 389 MMVATDVAARGLDIPHIRTVVNYDIARDIDTHTHRIGRTGRAGEKGTAYTLITDKD 444


>gi|312139814|ref|YP_004007150.1| dead/deah box helicase [Rhodococcus equi 103S]
 gi|311889153|emb|CBH48466.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
          Length = 448

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 126/341 (36%), Positives = 190/341 (55%), Gaps = 5/341 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL P +V A+  AG   P PIQ  TIP +L   DV G   TG+GKT +F LP+L  
Sbjct: 9   FAQLGLPPILVHALGRAGISAPFPIQAATIPDILAGRDVLGRGPTGSGKTLAFGLPLLVR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G +R   PR ++L PTRELAAQ+    ++      L  A ++GG+PF+AQ  KL R 
Sbjct: 69  LKGGASRPSRPRAVVLAPTRELAAQIEKALDEPALALGLRTATIVGGVPFKAQAVKLSRT 128

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV+I TPGR+ DH ++G + ++++ I  +DEAD M ++GF+P +  I    P T Q LL
Sbjct: 129 VDVVIATPGRLADHVSQGTIALDDVRITTVDEADHMAELGFLPQVTEILDRTPETAQRLL 188

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  E+  +   +L +P         +  +++EH  +  +     K   + ++   +
Sbjct: 189 FSATLDGEVDTLVARYLHDPVTHATAEAVAAVDSMEHHVL--HVPREIKYPTVARIAARE 246

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K  V  L   L   G +   +HG+  Q  R ++L+ F  GT+ ++VA+
Sbjct: 247 GRT---LLFVRTKAGVDRLTDELRAVGIAAGGLHGDKPQGHRTRVLAEFAGGTLPVLVAT 303

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G
Sbjct: 304 DVAARGIHVDDVSLVVHVDPPTEPKAYLHRAGRTARAGESG 344


>gi|294899003|ref|XP_002776456.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
           50983]
 gi|239883447|gb|EER08272.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
           50983]
          Length = 977

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 142/390 (36%), Positives = 216/390 (55%), Gaps = 32/390 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  +  A+   GY +PTPIQ K IP +L   DV  +A+TG+GKTA+FV+PM+ I
Sbjct: 32  FQTMGLSDPLFKAIQKMGYNQPTPIQRKAIPAILGGSDVVAMARTGSGKTAAFVIPMIQI 91

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L KG + V   R +IL PTRELA Q        GK  +L + L++GG   E+Q  +L   
Sbjct: 92  L-KGHSEVVGARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVGGHSMESQFDRLSSN 150

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLICTPGR++ H     L +  ++ +V DEADR+ +MGF   +Q+I    P +RQ LL
Sbjct: 151 PDVLICTPGRLVHHMVEADLSLQRVQYIVFDEADRLFEMGFADDMQSILKATPPSRQCLL 210

Query: 183 FSATMTDELQKVSENFL--QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL-- 238
           FSAT+  +L + S   L  ++ + I ++   + ++T++  F+ T A  SK  AL+  L  
Sbjct: 211 FSATLPSQLTQFSRAGLRSESTQFIRLDVEHTISDTLDLWFLYTTAD-SKPAALVALLRK 269

Query: 239 LQSQDTMKNG------------------------IIFCNQKKNVVNLCHSLEKQGFSVCA 274
           LQS      G                        I+F   + NV      L + G +   
Sbjct: 270 LQSMSNKSTGDATGVAGVEGKSKGGKKGPRSSKTIVFVATRHNVEFFASLLTQVGITNAP 329

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           I+G++DQ  R   LS F+ G   +++ +D+AARG+DIP + +V N+D P+ ++ ++HR G
Sbjct: 330 IYGSMDQTQRTSSLSKFRSGKASVLLVTDVAARGIDIPQLDYVINYDFPSSSKLFVHRCG 389

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RT RAG  G   +LV  +D+ +  A+E ++
Sbjct: 390 RTARAGAKGLCASLVTHDDMPY--AVELML 417


>gi|148974049|ref|ZP_01811582.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
           bacterium SWAT-3]
 gi|145965746|gb|EDK30994.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
           bacterium SWAT-3]
          Length = 443

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 136/388 (35%), Positives = 212/388 (54%), Gaps = 10/388 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + K T IQ K IP+ +   D+   ++TG+GKT +FVLPM+
Sbjct: 1   MHFKDLGLDNRLLKNLKHYDFKKATEIQSKAIPVAMAGKDLLASSKTGSGKTLAFVLPMI 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   R PR +IL PTRELA QV           +   AL++GG  F  Q K L
Sbjct: 61  HKALKTKAFSARDPRGVILAPTRELAKQVYGELRSMLGGLSYEAALILGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            +    ++ TPGR+ DH     L ++++E L++DEADRMLD+GF P ++ I +     R 
Sbjct: 121 RKYPRFIVATPGRLADHLEHRSLFLDSVETLILDEADRMLDLGFAPELRRIANAAKHRRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+   E+  ++   L  PKRI V   +     I   F         K A+L +
Sbjct: 181 QTLMFSATLDHAEVNDIANEMLDAPKRISVGVSNEQHLDITQKFYLC-DHLDHKEAILDR 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+  +  +  +IF   + +   L   L ++     A+ GN++Q  R  I+S F+    +
Sbjct: 240 VLEEAE-YRQVMIFTATRADTDRLTDKLNEKKLKAVALSGNLNQTQRNAIMSQFERAVYK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RG+DIP+V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D +  
Sbjct: 299 ILVTTDVASRGIDIPNVSHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWESF 358

Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNP 380
             +E  +++ +++     L G    + P
Sbjct: 359 KRVELYLQQDLNFSVLEGLKGKFKGIKP 386


>gi|330812848|ref|XP_003291329.1| hypothetical protein DICPUDRAFT_155915 [Dictyostelium purpureum]
 gi|325078509|gb|EGC32157.1| hypothetical protein DICPUDRAFT_155915 [Dictyostelium purpureum]
          Length = 1031

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 130/360 (36%), Positives = 215/360 (59%), Gaps = 8/360 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ ++L  G+  PTPIQ +TIPL+L+ +DV G+A+TG+GKT +FV+PM+ +
Sbjct: 221 FQSMGLNKLLLRSILKKGFNVPTPIQRRTIPLILEGNDVVGMARTGSGKTGAFVIPMVQM 280

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++    V + R++IL PTRELA Q     + + +  NL   L++GG   E Q   L R 
Sbjct: 281 LQEHSTVVGV-RSVILSPTRELAIQTFKVVKDFTQGTNLRTILIVGGDSMEEQYDDLARN 339

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++ H     + ++ ++ +V DEADR+ +MGF   +  I S +   RQTLL
Sbjct: 340 PDIIIATPGRLMHHLQETGMSLSKVKYIVFDEADRLFEMGFNEQLTEILSKLSENRQTLL 399

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS- 241
           FSAT+   L +     L NPK + ++T +  +E +   F     ++ +K  +L  LL+  
Sbjct: 400 FSATLPSLLVEFVRAGLNNPKLVRLDTDTKISENLALSFFT--VRHDEKLGVLLYLLKDI 457

Query: 242 --QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              D  K    IIF   K +V  +   LE+ G +   IHG +D  +R   L+ F+   + 
Sbjct: 458 IFADRTKKSPTIIFTATKYHVEFIHILLERTGITSTYIHGYLDPVARKINLAKFRTNQVS 517

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ +DLAARG+DIP + +V NFD P + + ++HR+GR  RAG+ G A++LV+ +++ ++
Sbjct: 518 ILIVTDLAARGIDIPLLDNVINFDFPPKEKIFVHRVGRVARAGKKGIAYSLVSPDEVPYM 577


>gi|238762788|ref|ZP_04623757.1| ATP-dependent RNA helicase srmB [Yersinia kristensenii ATCC 33638]
 gi|238699093|gb|EEP91841.1| ATP-dependent RNA helicase srmB [Yersinia kristensenii ATCC 33638]
          Length = 441

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 137/353 (38%), Positives = 203/353 (57%), Gaps = 4/353 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP L  
Sbjct: 6   FSELDLDERLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVAD   +  K+  L +A + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I++   + +QTL
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQTL 185

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  E +++ +E  L  P  +E +      + I+  +         K ALL  LL+
Sbjct: 186 LFSATLEGEAIREFAERILTEPVELEADPSRRERKKIQQWYYRA-DDIEHKTALLVHLLK 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  K+ IIF   ++ V  L   L + G +   + G + Q  R + +    +G + ++V
Sbjct: 245 QPEVQKS-IIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           A+D+A+RGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D
Sbjct: 304 ATDIASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHD 356


>gi|327268476|ref|XP_003219023.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 1 [Anolis
           carolinensis]
          Length = 713

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 143/392 (36%), Positives = 222/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 230 FSDVDMGEIIMGNIELTRYTRPTPVQKYAIPIIKDKRDLMACAQTGSGKTAAFLLPILSQ 289

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 290 IYTDGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSKVRPCVVY 349

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 350 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 409

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   RQT++FSAT   E+Q ++ +FL+    + V    ST+E I    V 
Sbjct: 410 RRIVEKDTMPPKGVRQTMMFSATFPKEIQMLARDFLEEYIFLAVGRVGSTSENITQKVV- 468

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + S K + L  LL +       ++F   KK   +L   L ++G++  +IHG+  QR 
Sbjct: 469 -WVEDSDKRSFLLDLLDATGKDSLTLVFVETKKGADSLEDFLFREGYACTSIHGDRSQRD 527

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 528 REEALHQFRSGRSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 587

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 588 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 619


>gi|91201977|emb|CAJ75037.1| similar to ATP-independent RNA helicase DbpA [Candidatus Kuenenia
           stuttgartiensis]
          Length = 407

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 150/432 (34%), Positives = 232/432 (53%), Gaps = 34/432 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DL LS  ++ A+   GY + TPIQ  T P++   HD+C +A+TG+GKTA+  +P++
Sbjct: 1   MKFSDLELSADILKALDKMGYNEMTPIQEATYPIIFAGHDLCALAETGSGKTAACAIPLI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +K    +   + L++ PTREL  Q  +   K     ++    + GG    AQ  +++
Sbjct: 61  ---QKVDPSLDAIQGLVIVPTRELCMQYVEEIRKIAAKTDVIPYAVYGGFDRAAQIARVK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGR++D    G L    I+ +++DEAD +L +GF+  I+ I S +    QT
Sbjct: 118 QTVHILVATPGRLIDLLYEGILSFARIKCVILDEADELLKVGFLEDIEFILSCIRHKHQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D+++K++++ L  P+ I + T  S  E+IEH F  +Y    +K   L + L+
Sbjct: 178 LLFSATMPDDIKKLTQDCLHEPQYISLVTKRSAPESIEHYF--SYVNPKQKHEELVKYLK 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++ +   +IFCN +  V +L   L K    +  +H  + Q  R  I+  F+   I+ ++
Sbjct: 236 GEE-VNQALIFCNARHMVDSLFRLLRKDFHDIEYMHAGLAQDKRSSIIRRFRSQKIRYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+A RGLD   V HV N+D+P   E Y HR GR GR GR G AFTLVAK+D+  +  +
Sbjct: 295 ASDVAGRGLDFSHVSHVINWDMPRDGEQYTHRTGRAGRMGRKGIAFTLVAKKDLSLLSKV 354

Query: 361 EKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS--- 415
             +  +K+   W+       NP  E+        AR    IP       R+K N  S   
Sbjct: 355 --ISSRKISPCWIGK-----NPFNEE--------ARSRQRIP-------RKKINTPSPAP 392

Query: 416 -QKSHIPLKESE 426
            Q   IP KESE
Sbjct: 393 LQDRKIPEKESE 404


>gi|323141176|ref|ZP_08076077.1| putative DEAD-box ATP-dependent RNA helicase CshA
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414319|gb|EFY05137.1| putative DEAD-box ATP-dependent RNA helicase CshA
           [Phascolarctobacterium sp. YIT 12067]
          Length = 418

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 134/361 (37%), Positives = 205/361 (56%), Gaps = 10/361 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L +    V  +   G  KP P+Q + IP +    DV   AQTGTGKT +F++P+   
Sbjct: 5   FAALKVCAHTVEQLQKMGIKKPMPVQEQAIPALFAGRDVIARAQTGTGKTLAFLVPLAEK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  ++ V+    L++ PTRELA Q+A   +K     ++ V  + GG  FE Q  KLE  
Sbjct: 65  IDTAKSYVQ---ALVITPTRELAQQIATEMKKILGESDIKVLAVTGGRDFETQKYKLEGR 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + VLI TPGR+LDH  +G   +  +  LV+DE D ML  GF+     + ++     QT+L
Sbjct: 122 SHVLIGTPGRLLDHIRKGNTDLGGVRYLVLDEVDEMLQQGFMDEALELIAMTAPEHQTML 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK--CALLQQLLQ 240
            SAT+++E++K+     +N   I++N   +T E I+   + T  +Y  K   AL+ +L  
Sbjct: 182 CSATLSEEVRKLGRKLTKNCALIDINPDQATVEKIKQVCLKTTDEYKNKAVAALIDRL-- 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M   I+FC  K+    L   L  QG++V  +HG +    R  ++  F++  IQ++V
Sbjct: 240 NPYLM---IVFCMSKERTKELGDWLGMQGYNVDVLHGEMSPAKRKTVMKAFRDAKIQILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASDLAARGLD+  V HV N+D+P+  + Y+HRIGRTGRAG  G+A TL   +++K +  I
Sbjct: 297 ASDLAARGLDVEGVTHVVNYDIPHDVDWYVHRIGRTGRAGNEGEAITLYTADEVKWLRNI 356

Query: 361 E 361
           E
Sbjct: 357 E 357


>gi|317047085|ref|YP_004114733.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp.
           At-9b]
 gi|316948702|gb|ADU68177.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
          Length = 459

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 131/353 (37%), Positives = 207/353 (58%), Gaps = 8/353 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+   TPIQ   +P +LQ  DV   A+TG+GKTA+F + +L  ++  +   +    L+L 
Sbjct: 22  GFDAMTPIQAAALPAILQGRDVRAQAKTGSGKTAAFGIGLLQRIDNSQFHTQ---ALVLC 78

Query: 80  PTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QV++   +  +   N+ +  L GG P  AQ   L     +++ TPGRILDH  
Sbjct: 79  PTRELADQVSNVLRQLARFTRNIKILTLCGGQPMSAQRDSLVHAPHIVVGTPGRILDHLK 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           R  L +N ++ LV+DEADRML+MGF   ++ I    P  RQTLLFSAT  D +  +SE +
Sbjct: 139 RDNLDLNQLQTLVLDEADRMLEMGFRDDMEAIIGFTPAARQTLLFSATWPDTIASLSERY 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            ++   +   T +     IE  F+   A  S++  LL  LL SQ    + ++FCN K+  
Sbjct: 199 QRDALAVATETEAEL-PAIEQRFIEVSA--SERTNLLSALL-SQQQPTSCVVFCNTKREC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            ++  +L  +  S  A+HG+++QR R ++L  F  G+I++++A+D+AARGLDI  +  V 
Sbjct: 255 DDIAAALNDRQISALALHGDLEQRDRERVLIRFANGSIRVLIATDVAARGLDIKSLALVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
           N+ +    E ++HRIGRTGRAG  G A + VA +++    A+E  +++ ++W+
Sbjct: 315 NYHLAWDPEVHLHRIGRTGRAGESGLAVSFVAADEMARAHALEDYLQQSLNWV 367


>gi|169773691|ref|XP_001821314.1| ATP-dependent RNA helicase ded1 [Aspergillus oryzae RIB40]
 gi|91206555|sp|Q2UGK3|DED1_ASPOR RecName: Full=ATP-dependent RNA helicase ded1
 gi|83769175|dbj|BAE59312.1| unnamed protein product [Aspergillus oryzae]
          Length = 675

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 204/363 (56%), Gaps = 22/363 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 188 FTNPPLDDHLIANITLAHYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 247

Query: 63  ----------------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                              GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 248 AFQNGPSPTPAPASGQFSYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVV 307

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ L++DEADRMLDMGF P 
Sbjct: 308 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQ 367

Query: 167 IQNITSL--VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I     +P    RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 368 IRRIVEGEDMPHVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQK-- 425

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             Y +   K ++L  +L +  T    +IF   K+   +L   L  Q F   AIHG+  QR
Sbjct: 426 VEYVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQR 485

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 486 ERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 545

Query: 343 GKA 345
           G A
Sbjct: 546 GIA 548


>gi|134097656|ref|YP_001103317.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133910279|emb|CAM00392.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 496

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 134/347 (38%), Positives = 199/347 (57%), Gaps = 13/347 (3%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE-KG 66
           ++P++V A+ +AG      IQ  T+PL L+  D+ G A+TGTGKT  F +P+L  L+  G
Sbjct: 1   MNPEIVRALGEAGIEHTFAIQELTLPLALRGEDLIGQARTGTGKTLGFGVPVLHRLQVPG 60

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
                 P+ L++ PTREL  QVA +    GK+  +    + GG P+E Q + L  G D++
Sbjct: 61  DG---TPQALVVVPTRELCVQVARDLTDAGKHLGIRTLAVYGGRPYEQQIEALRSGVDLV 117

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+LD   +  L++  +  LV+DEAD MLD+GF+P I+ I  +VP  RQT+LFSAT
Sbjct: 118 IGTPGRLLDLAEQQHLVLGKVRALVLDEADEMLDLGFLPDIERILHMVPEQRQTMLFSAT 177

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
           M   +  ++  FL+ P  I      + A           A    K  L+ + +Q+     
Sbjct: 178 MPGPIITLARTFLRQPTHIRAEQADAGAIHERTKQFVYRAHAMDKTELIARAMQA----- 232

Query: 247 NG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           NG    +IF   K+    L   L ++GF+  A+HG++ Q +R + L  F+ G + ++VA+
Sbjct: 233 NGRGLSMIFTRTKRTAQKLSDELTERGFAAAAVHGDLGQGAREQALRAFRSGKVDILVAT 292

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+  V HV N   P+  + Y+HRIGRTGRAGR G A TLV
Sbjct: 293 DVAARGIDVGGVTHVVNLQCPDDEKTYVHRIGRTGRAGREGVAITLV 339


>gi|332140339|ref|YP_004426077.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550361|gb|AEA97079.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 408

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 135/359 (37%), Positives = 202/359 (56%), Gaps = 4/359 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   +  A  D G+  PT IQ   IP  L   D+   A TGTGKTA+F+LP  
Sbjct: 1   MTFEELELDDALCHAAADMGFEAPTNIQELVIPHALDGRDILASAPTGTGKTAAFLLPAC 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +    R LIL PTRELA QV +      K+  L   ++ GGI +    + L
Sbjct: 61  QFLLDYPRKQPGATRILILTPTRELALQVYEQAVAITKHTQLVCGVITGGINYGTDKETL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+L+ TPGR+L+H  +      +IE L++DEADRMLDMGF   +  I +   + +Q
Sbjct: 121 SKNLDILVATPGRLLEHIEKEAADCRDIECLILDEADRMLDMGFSTVVNQIAAEARWRKQ 180

Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            LLFSAT+  + ++  + + L NP+ +E N PS   +   H +       + K ALL  +
Sbjct: 181 NLLFSATLEGKGVKTFAHDILNNPEIVEAN-PSRKEKNKIHQWYHLADDMNHKQALLVNI 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ Q+T  + ++F   +  +  L   L  Q   VC + G + Q  R   ++ FK G + +
Sbjct: 240 LK-QETTTSAVVFVKTRDRLQMLKDFLASQDIQVCWLQGEMPQDKRNAAMARFKNGEVPI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++A+D+AARG+D+P+V HV NFD+P +A+ Y+HRIGRTGRAG  G A +LV   D + +
Sbjct: 299 LLATDVAARGIDVPNVSHVINFDMPRKADIYVHRIGRTGRAGAKGTAISLVEAHDFEMV 357


>gi|73992239|ref|XP_867139.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX27
           (DEAD-box protein 27) isoform 2 [Canis familiaris]
          Length = 763

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 159/470 (33%), Positives = 248/470 (52%), Gaps = 33/470 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 185 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 244

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++    ++L      GG+  ++Q   L 
Sbjct: 245 ERLIYKPRQSPVTRVLVLVPTRELGIQVHSVTKQLA--HHLAGLFSAGGLDVKSQEAALR 302

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 303 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 362

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   FV            +   L
Sbjct: 363 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAAL 422

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 423 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 482

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K +  
Sbjct: 483 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 542

Query: 360 IEKL-----------------IEKKVDWLNGDLSS-LNPPLEKIDI----AQHNHARKNN 397
           I K                     K++ +  D+ + L    E+ ++    AQ N A++  
Sbjct: 543 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQQSEAQINTAKR-- 600

Query: 398 PIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
            + ++  G  +   N+  ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 601 -LLEREKG--KEASNHEPERSWFQTKEERKKEKIAKALQEFD---LALRG 644


>gi|70945861|ref|XP_742705.1| RNA helicase [Plasmodium chabaudi chabaudi]
 gi|56521835|emb|CAH78029.1| RNA helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 483

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 134/370 (36%), Positives = 213/370 (57%), Gaps = 12/370 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L +  +V+ ++ + G+ KPT IQ K +PLV Q+ D+ G+++TG+GKTA F++P   I
Sbjct: 99  FSQLNICEEVLQSIKELGWEKPTLIQQKVLPLVFQKRDIIGLSETGSGKTACFIIP---I 155

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++ + + +    LI+ PTREL  Q+A N +  G N  + +  + GG+    Q+  L + 
Sbjct: 156 LQELKYKKQSFFALIISPTRELCIQIAQNAQALGSNLLINICTIFGGVDIVTQSLNLAKK 215

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            +++I TPGRILDH N  K   + N++ LV DEAD++L + F   I  +  ++P  R T 
Sbjct: 216 PNIIISTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSLDFESSINKLLLILPNNRITF 275

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLL 239
           LFSATMT  + K+ +  L+NP +IEV+   ST +T+   + F+    +Y+  C+L     
Sbjct: 276 LFSATMTKSVAKLKKASLKNPIKIEVSNKYSTVKTLIETYIFLPLKYKYTYLCSLCFYF- 334

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T KN IIF N       L       G     +HG + Q  R+  L+ FK     ++
Sbjct: 335 ----TNKNIIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNLFKTNKYNIL 390

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++ + ARGLD+ ++  V NFD+ +  E YIHR+GRT RAG+ GK+ T V + D++    
Sbjct: 391 ISTQVGARGLDLQNIKIVINFDLCSCKE-YIHRVGRTARAGKTGKSITFVTQYDVEAFLT 449

Query: 360 IEKLIEKKVD 369
           IEK + KK+D
Sbjct: 450 IEKQLNKKID 459


>gi|326318063|ref|YP_004235735.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323374899|gb|ADX47168.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 615

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 149/411 (36%), Positives = 225/411 (54%), Gaps = 56/411 (13%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-------DVCGIAQTGTGKTASF 55
           F +LGL+P++V AV D GY +PT +Q + IPL +          D+   +QTG+GKTA+F
Sbjct: 54  FVELGLAPELVQAVADLGYTQPTGVQERAIPLAMGAGADAGKFIDLMVSSQTGSGKTAAF 113

Query: 56  VLPMLTIL--------------------------EKGRARVR-------------MPRTL 76
           +LP+L  L                          E    R +              P  L
Sbjct: 114 LLPVLHTLIGQQAAAQATARAEYEAAAAEALARGETAPKRAKRKDPTNPRHFKAATPGAL 173

Query: 77  ILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           IL PTRELA QVA D  E       L VA ++GGIP++ Q  KL+  AD+++ TPGR+LD
Sbjct: 174 ILCPTRELAQQVAHDAIELVRHCRGLRVANVVGGIPYQLQIAKLQN-ADLVVATPGRLLD 232

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
                ++ ++ ++ LV+DEADRMLD+GF   +  I  L    +QT++FSAT    +Q+++
Sbjct: 233 LQRSMQIKLDQVQFLVVDEADRMLDLGFSDDLAEINELTSQRKQTMMFSATFAPRIQQLA 292

Query: 196 ENFLQNP----KRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQSQDTMKNGII 250
              + +     K++++++P      I+   F A  AQ+ +K  LL   L+   T+   I+
Sbjct: 293 MRVMHDGGASVKKVQIDSPQEKHANIKQTLFWADNAQHKRK--LLDHWLRDT-TINQAIV 349

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F + +     L + L+++GFS  A+HG + Q  R + L   + G +Q++VA+D+AARG+D
Sbjct: 350 FASTQVECDGLANDLQQEGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGID 409

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +P + HVFNF +P +AE+Y HRIGRTGRAGR G A T     D + I  IE
Sbjct: 410 VPTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIE 460


>gi|238491700|ref|XP_002377087.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus flavus
           NRRL3357]
 gi|220697500|gb|EED53841.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus flavus
           NRRL3357]
          Length = 676

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 204/363 (56%), Gaps = 22/363 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 189 FTNPPLDDHLIANITLAHYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 248

Query: 63  ----------------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                              GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 249 AFQNGPSPTPAPASGQFSYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVV 308

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ L++DEADRMLDMGF P 
Sbjct: 309 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQ 368

Query: 167 IQNITSL--VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I     +P    RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 369 IRRIVEGEDMPHVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQK-- 426

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             Y +   K ++L  +L +  T    +IF   K+   +L   L  Q F   AIHG+  QR
Sbjct: 427 VEYVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQR 486

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 487 ERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 546

Query: 343 GKA 345
           G A
Sbjct: 547 GIA 549


>gi|290562842|ref|NP_001166829.1| DEAD box polypeptide 5 isoform 2 [Bombyx mori]
 gi|95102744|gb|ABF51313.1| DEAD box polypeptide 5 isoform 2 [Bombyx mori]
          Length = 512

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 127/353 (35%), Positives = 202/353 (57%), Gaps = 9/353 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +      V   V   GY +PTPIQ +  P+ +   ++ G+AQTG+GKT +++LP +  
Sbjct: 82  FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 141

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA Q+      +G    +    + GG P   Q + LE
Sbjct: 142 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 201

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 202 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT 261

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALL 235
           L++SAT   E++K++E++L +  +I + +   +A     + ++ C    + + +K   LL
Sbjct: 262 LMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDIC--QEHEKENKLNVLL 319

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q++ QSQ+     IIF   K+   N+  ++ + G+    +HG+  Q+ R ++L  FKEG 
Sbjct: 320 QEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGR 379

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             ++VA+D+AARGLD+  + +V NFD PN +E+YIHRIGRTGR+   G ++  
Sbjct: 380 ASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAF 432


>gi|70996226|ref|XP_752868.1| ATP-dependent RNA helicase (Drs1) [Aspergillus fumigatus Af293]
 gi|74672247|sp|Q4WRV2|DRS1_ASPFU RecName: Full=ATP-dependent RNA helicase drs1
 gi|66850503|gb|EAL90830.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus fumigatus
           Af293]
 gi|159131623|gb|EDP56736.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus fumigatus
           A1163]
          Length = 830

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 138/355 (38%), Positives = 200/355 (56%), Gaps = 3/355 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS  ++  +    +  PTPIQ KTIP+ L   D+ G A TG+GKTA+FV+P+L  
Sbjct: 312 FQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILER 371

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q  +   K   + ++T   L+GG     Q   L++ 
Sbjct: 372 LLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATHTDITFCQLVGGFSLREQENILKKR 431

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 432 PDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTM 491

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMTD + K+    L  P R+ V++  +T+  +   FV     +  K+   L  L  
Sbjct: 492 LFSATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLTQEFVRLRPGREDKRLGYLLYLCN 551

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  I+F  QK+    +       G     +HG++ Q  R+K + NF+EG +  ++
Sbjct: 552 EIYTGRV-IVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVENFREGKVAFLL 610

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K
Sbjct: 611 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRK 665


>gi|282855404|ref|ZP_06264727.1| cold-shock deAd box protein a [Pyramidobacter piscolens W5455]
 gi|282586784|gb|EFB92029.1| cold-shock deAd box protein a [Pyramidobacter piscolens W5455]
          Length = 467

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 138/388 (35%), Positives = 214/388 (55%), Gaps = 14/388 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L    + A+   G+  PTP+Q + +       D+   A+TG+GKT +F+LP+L+ 
Sbjct: 18  FRDFNLPESFLAALDQRGFTTPTPVQAQVLSQPNLDTDMVVQARTGSGKTLAFLLPLLSE 77

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE G  +   PR L+L PTRELA Q A   E  G+   +  A ++GG+  E Q  +L  G
Sbjct: 78  LEGGSKK---PRLLVLSPTRELAMQNASESEFLGRIRGVGTASIVGGMSMEHQIFQLRHG 134

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A V++ TPGR+LDH  RG L ++ IE LV+DE D MLDMGF   ++ I       ++T L
Sbjct: 135 ASVVVGTPGRVLDHIRRGTLDLSEIETLVLDEGDNMLDMGFRDELEAILEAAVNRKKTWL 194

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQS 241
           FSATM D +  +   +L+ P R+E+N      E I H  ++    Q  +  AL+  LL  
Sbjct: 195 FSATMPDSVFSLCRRYLKEPMRLELNHEEEQHEDIVHRAYLVPSRQ--RMEALVNILLWE 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   +IFC+ K +   +   L+++G    A++G++ QR R   L +F+ G I ++VA
Sbjct: 253 KPAL--CLIFCHTKTDTGEVAGRLQEEGLMALALNGDMTQRERSNALESFRTGRIPILVA 310

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +++AARGLD+  V HV    +P+  E ++HR GRTGRAG  G    L+  ++      + 
Sbjct: 311 TNVAARGLDVQGVSHVIQLGLPDNMETFVHRSGRTGRAGHEGSNLLLLTPQESGRFKFML 370

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
           +  E KV+WL        P +++I + Q
Sbjct: 371 RSSEMKVEWLK------VPDIQEISVIQ 392


>gi|197337401|ref|YP_002157747.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Vibrio fischeri MJ11]
 gi|197314653|gb|ACH64102.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Vibrio fischeri MJ11]
          Length = 462

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 135/363 (37%), Positives = 207/363 (57%), Gaps = 7/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P ++  +   GY + TPIQ +++P +L+  DV    +TG+GKTA+F L +L  
Sbjct: 6   FSSLDLHPSLLQNLETLGYNEMTPIQAQSLPFMLKGKDVIAQGKTGSGKTAAFGLGLLAN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA    K  +  +N+ V  L GG+PF  Q   LE 
Sbjct: 66  LNVKRFRVQ---SLVLCPTRELADQVAKEIRKLARAIHNIKVLTLCGGVPFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ +H  +G L ++N+   V+DEADRML+MGF   I  +    P  RQ L
Sbjct: 123 GAHIIVGTPGRVEEHLRKGYLNLDNLNTFVLDEADRMLEMGFQDAIDAVLDHAPVKRQNL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   +++ +++  + +P   +           +H F      +  +   LQ LL  
Sbjct: 183 LFSATFPPQIKSIADRIMNDPIMTKAEETVENTSINQHFF--KVGDFEDRLEALQILLLK 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ +IFCN K+    +   L    FSV A+HG+++QR R K L  F   +  ++VA
Sbjct: 241 HQP-ESTVIFCNTKRVTQEVADELRHYDFSVTALHGDLEQRDRDKALVRFANKSTSILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V NF++    E ++HRIGRTGRAG  G A +L  ++++ +I  IE
Sbjct: 300 TDVAARGLDIESLDAVVNFELSRDPEVHVHRIGRTGRAGNKGIALSLFNEKEMHNIAQIE 359

Query: 362 KLI 364
           + +
Sbjct: 360 EYM 362


>gi|195493240|ref|XP_002094331.1| GE20258 [Drosophila yakuba]
 gi|194180432|gb|EDW94043.1| GE20258 [Drosophila yakuba]
          Length = 789

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 133/355 (37%), Positives = 205/355 (57%), Gaps = 7/355 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F   G   +++ AV  A Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 271 FGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMH 330

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + +K       P  LIL PTREL+ Q+ +  +K+GK YNL V    GG     Q+K LE
Sbjct: 331 VMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALE 390

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA++++ TPGR++D        +  +  LV+DEADRM  MGF P +++I + V   RQ 
Sbjct: 391 QGAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQC 450

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT    +++++ + L +P RI     +   + I            K   LL  L++
Sbjct: 451 LMFSATFKKRIERLARDVLTDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLVHLVK 510

Query: 241 --SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S+ ++   +IF  +K +   + ++L  + ++   +HG++DQ  R K+++ FK     +
Sbjct: 511 FLSEGSV---LIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDI 567

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +VA+D+AARGLDIP + +V N+D     E + HRIGRTGRAG  G AFTLV  +D
Sbjct: 568 LVATDVAARGLDIPHIKNVVNYDTARDIETHTHRIGRTGRAGEKGNAFTLVTDKD 622


>gi|118404346|ref|NP_001072473.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Xenopus (Silurana)
           tropicalis]
 gi|112419339|gb|AAI21889.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Xenopus (Silurana)
           tropicalis]
          Length = 666

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 146/377 (38%), Positives = 216/377 (57%), Gaps = 21/377 (5%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG--- 66
           P+V+ A+  +G+ +PTPIQ +  P++LQ  D+ GIAQTGTGKT +++LP    L+     
Sbjct: 269 PEVMSALEKSGFERPTPIQSQAWPVILQGIDLIGIAQTGTGKTLAYLLPGFIHLDLQPIP 328

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTRELA QV     KY K        + GG     Q  K+ +G D++
Sbjct: 329 REQQDGPGMLVLAPTRELALQVKAECSKY-KYKGFESICIYGGGDRNNQINKVTKGVDIV 387

Query: 127 ICTPGRILDHFNRGKLLMNN------IEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           I TPGR+ D      L MNN      I  LV+DEADRMLDMGF P I  I   +   R T
Sbjct: 388 IATPGRLND------LQMNNFVNLKSITYLVLDEADRMLDMGFEPQIMKILIDIRPDRHT 441

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL-- 238
           ++ SAT  D ++++++++L++P  + V T    A       V    +  K+  +L  +  
Sbjct: 442 IMTSATWPDGVRRLAKSYLKDPMMVYVGTLDLAAVNTVTQHVLVIPEEEKRAFVLHFIDS 501

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ QD +   I+F  +K    +L      QG  V ++HGN +Q  R + L +FK+G +++
Sbjct: 502 LKPQDKV---IVFVGKKLVADDLSSDFSLQGIPVQSLHGNREQCDREQALDDFKKGKVRI 558

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLA+RGLD+ DV HV NFD P   E Y+HR+GRTGRAGR G++ TLV ++D K   
Sbjct: 559 LVATDLASRGLDVHDVTHVLNFDFPRNIEEYVHRVGRTGRAGRTGESITLVTRKDWKVAG 618

Query: 359 AIEKLIEKKVDWLNGDL 375
            +  ++E+    + GDL
Sbjct: 619 ELISILERANQEVPGDL 635


>gi|195109284|ref|XP_001999217.1| GI23184 [Drosophila mojavensis]
 gi|193915811|gb|EDW14678.1| GI23184 [Drosophila mojavensis]
          Length = 724

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 141/389 (36%), Positives = 212/389 (54%), Gaps = 12/389 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF++  L   V+  +   GY  PTPIQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 277 DFSEAYLPDYVLKEIRRQGYKAPTPIQAQGWPIAMSGANFVGIAKTGSGKTLGYILPAIV 336

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +  ++   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 337 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 396

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 397 QRGCEIVIATPGRLIDFLSAGATNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 456

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+++++E+FL N  +I + +   +A       V    ++SK+  L   L 
Sbjct: 457 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEDKLKSLLS 516

Query: 240 QSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
              DT +N    IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G  
Sbjct: 517 DIYDTSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 576

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + K 
Sbjct: 577 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 636

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
             A+       VD L      +NP LE +
Sbjct: 637 AKAL-------VDVLREANQEINPALENM 658


>gi|45361669|ref|NP_989409.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Xenopus (Silurana)
           tropicalis]
 gi|40787696|gb|AAH64887.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Xenopus (Silurana)
           tropicalis]
          Length = 479

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 154/416 (37%), Positives = 226/416 (54%), Gaps = 17/416 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGLS  ++      G +KP+P+Q   IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FSRLGLSSWLIDQCSQLGILKPSPVQENCIPPILEGRDCMGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  LSEDPFGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178
             V+I TPGR+ DH        +  I  LV+DEADR+L+ G   F   +Q I   VP  R
Sbjct: 121 PHVVIATPGRLADHIRSSNTFSIKKIRFLVLDEADRLLEQGCTDFTQDLQVILEAVPAQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+TD LQ++    +  P   E  +   T E ++  ++    +   K A L  L
Sbjct: 181 QTLLFSATLTDTLQELKTIAMNKPFFWESTSEVRTVEQLDQRYILVPEKV--KDAYLVHL 238

Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q  QD  ++   +IF N  K    L   L +  F   A+H  + Q+ R   L+ FK   
Sbjct: 239 IQKFQDEHEDWSIMIFTNTCKTCQILNMMLREFSFPSVALHSMMKQKQRFAALAKFKSSV 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++A+D+AARGLDIP V  V N + P   + YIHR+GRT RAGR+G A TLV + DI 
Sbjct: 299 FKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGMAITLVTQYDIH 358

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            + AIE+ I  K++      S +   L ++++      R+   I  + T FD +K+
Sbjct: 359 LVHAIEEQINMKLEEFKVKESEVLKILTQVNV-----TRRECEIKLECTDFDEKKE 409


>gi|238783457|ref|ZP_04627480.1| ATP-independent RNA helicase dbpA [Yersinia bercovieri ATCC 43970]
 gi|238715702|gb|EEQ07691.1| ATP-independent RNA helicase dbpA [Yersinia bercovieri ATCC 43970]
          Length = 511

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 217/373 (58%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L  
Sbjct: 57  FSSLTLPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLDK 116

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           +  G     + + L+L PTRELA QV+    +  +   N+ +  L GG P   Q   L  
Sbjct: 117 IAVGEF---VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVH 173

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI +H  +  L++++++ILV+DEADRMLDMGF   I ++ +  P  RQTL
Sbjct: 174 APHIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTL 233

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S    + P  +EV+     A  IE  F  T  +  K+  LL  +L S
Sbjct: 234 LFSATYPAGIEQISARVQRQPVNVEVDD-GDEAPAIEQLFFETTRE--KRLPLLISVL-S 289

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + ++FCN KK+  ++  +LE +G SV A+HG+++QR R ++L  F   + +++VA
Sbjct: 290 HYQPASAVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVA 349

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V NF++    E ++HRIGRTGRAG  G A +L   +++    AIE
Sbjct: 350 TDVAARGLDIKDLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHAIE 409

Query: 362 KLIEKKVDWLNGD 374
             ++ K+ W   D
Sbjct: 410 DYLQIKLKWTPAD 422


>gi|156545118|ref|XP_001602070.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 821

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 133/379 (35%), Positives = 209/379 (55%), Gaps = 41/379 (10%)

Query: 10  PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI------ 62
           PK +  ++D  GY   TPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L        
Sbjct: 401 PKEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLLWITSLPK 460

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E+     + P ++IL PTRELA Q+ +   K+G+   +   +++GG+  E Q  +L  G
Sbjct: 461 IERTDEVDQGPWSIILAPTRELAQQIEEETNKFGQPLGIRTVVVVGGLSREEQGFRLRMG 520

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177
            +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P T     
Sbjct: 521 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 580

Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNT---PSSTA 214
                               RQT++F+ATM   +++++  +L+ P  + + +   P+   
Sbjct: 581 NEDAENEEKLLANYNSRKKYRQTVMFTATMPAAVERLARTYLRRPAVVYIGSIGKPTERT 640

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           E I H       +  K+  L++ L  S+      IIF NQKK    L   LEK G++ C 
Sbjct: 641 EQIVHIM----GEADKRRKLMEIL--SRGVEPPVIIFVNQKKGADVLARGLEKLGYNACT 694

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG   Q  R   L++ K G+  ++VA+D+A RG+DI DV  V N+D+    E+Y HRIG
Sbjct: 695 LHGGKGQEQREYALASLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIG 754

Query: 335 RTGRAGRHGKAFTLVAKED 353
           RTGRAG+ G A +   K+D
Sbjct: 755 RTGRAGKAGVAISFCTKDD 773


>gi|224124820|ref|XP_002319430.1| predicted protein [Populus trichocarpa]
 gi|222857806|gb|EEE95353.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 132/373 (35%), Positives = 206/373 (55%), Gaps = 13/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D+ L   ++  +    Y +PT IQ + + + L   D+ G A+TG+GKTA+F +PM+  
Sbjct: 117 FEDMCLHQSIMKDIAHHEYTRPTSIQAQAMTVALSGRDLLGCAETGSGKTAAFTIPMIQH 176

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
            + +    R   P  L+L PTRELA Q+    + + ++  +   A+++GG     Q  +L
Sbjct: 177 CLAQPTVRRGDGPLALVLAPTRELAQQIEKEVKGFSRSLESFRTAIVVGGTNIADQRLEL 236

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DV++ TPGR++DH  +G   ++ I  +V+DEADRMLDMGF P I+ +   +P   Q
Sbjct: 237 RAGVDVIVATPGRLIDHLQQGNTSLSRISFIVLDEADRMLDMGFEPQIREVMRNLPEKHQ 296

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E++ +++ +L +P ++ V   SS    +    + T    S+K   L  LL
Sbjct: 297 TLLFSATMPVEIETLTQEYLTSPVQVRVGKVSSPTANVSQ--ILTKVSESEKIDCLLALL 354

Query: 240 ---QSQDTMKN-----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
               SQ    N      I+F  +K     +  +L  Q     A+HG   Q  R   L +F
Sbjct: 355 VEDASQAERSNQPFPLTIVFVERKTRCNEVAEALVAQALQAVALHGGRSQSDREAALRDF 414

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G+  ++VA+D+A+RGLD+  V HV N D+P   E+Y+HRIGRTGRAG  G+A +    
Sbjct: 415 RSGSTSILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTD 474

Query: 352 EDIKHIDAIEKLI 364
           +D+  +  I+K I
Sbjct: 475 QDLFLVAQIKKAI 487


>gi|74006738|ref|XP_861475.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 9 [Canis familiaris]
          Length = 663

 Score =  242 bits (617), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 144/395 (36%), Positives = 223/395 (56%), Gaps = 30/395 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 182 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241

Query: 63  L-------------EKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
           +             E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 242 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 301

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 302 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 361

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 362 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 420

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + S K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 421 -WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 479

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 480 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 539

Query: 344 KAFTLVAKEDIKHI----DAIEKLIEKKVD---WL 371
           K   LV  + +++I    D ++ L+E K +   WL
Sbjct: 540 KC--LVTFDGLRNINITKDLLDLLVEAKQEVPSWL 572


>gi|88860789|ref|ZP_01135426.1| putative ATP-dependent RNA helicase DbpA [Pseudoalteromonas
           tunicata D2]
 gi|88817384|gb|EAR27202.1| putative ATP-dependent RNA helicase DbpA [Pseudoalteromonas
           tunicata D2]
          Length = 460

 Score =  242 bits (617), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 139/385 (36%), Positives = 219/385 (56%), Gaps = 13/385 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P ++  +    Y   TPIQ +++P +L   DV   A+TG+GKTA+F L +L  
Sbjct: 6   FSSLKLQPALLENLTSLEYTSMTPIQAQSLPHILSGKDVIAQAKTGSGKTAAFALGLLEN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+  + RV+    L+L PTRELA QVA    K  +   N+ V  L GG+P   Q   LE 
Sbjct: 66  LDVRKYRVQ---ALVLCPTRELADQVAQEIRKLARGIPNVKVLALCGGVPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI DH +R  L ++++  LV+DEADRMLDMGF   +  I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIEDHLSRRTLDLSHVNTLVLDEADRMLDMGFSAALDAIIDQTPRDRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT  +++Q+++   +++P ++EV +  +     ++ +     + +K+     +LL  
Sbjct: 183 FFSATFPEKIQQIASRTMRDPVKVEVESSHNNVNIRQYFY---KVEQNKQRTTALRLLLL 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + ++FCN +     +   L   GFSV A+HG ++QR R + L  F   +I ++VA
Sbjct: 240 KHEPNSCVVFCNTRVETQAVADELAVSGFSVLALHGELEQRERDQTLVRFANKSISILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++  V N+ +    E ++HRIGRTGRAG  G A +L    +   + A+ 
Sbjct: 300 TDVAARGLDINELDMVINYHITQDPEVHVHRIGRTGRAGSKGTAHSLFTDNESYRVAAVS 359

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKID 386
           +  +K+      +LS+L PP   +D
Sbjct: 360 EYFDKQF-----ELSAL-PPFTLLD 378


>gi|297478376|ref|XP_002690065.1| PREDICTED: rCG25924-like [Bos taurus]
 gi|296484278|gb|DAA26393.1| rCG25924-like [Bos taurus]
          Length = 643

 Score =  242 bits (617), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 213/370 (57%), Gaps = 4/370 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P+V+  +  AG+ KPTPIQ +  P++LQ  D+ G+AQTGTGKT S+++P    ++     
Sbjct: 248 PEVMRNIEKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHIDSQPVA 307

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  L+L PTRELA QV     +Y     L    + GG   + Q K L +GAD++I T
Sbjct: 308 RNGPGMLVLTPTRELALQVDAECSEYSYR-GLKSVCIYGGGDRDGQIKDLSKGADIIIAT 366

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGR+ D      + + +I  LV+DEAD+MLDMGF P I  I   V   RQT++ SAT   
Sbjct: 367 PGRLHDLQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSATWPY 426

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
            ++++++++L+ P  + V T    A  T+    + T     +K + +Q  + S       
Sbjct: 427 AVRRLAQSYLKEPMIVYVGTLDLVAVSTVTQNIIVTTE--DEKRSHIQAFIDSMSPKDKV 484

Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           IIF ++K    +L   L  +  SV ++HGN +Q  R + L +FK G +++++A+DLA+RG
Sbjct: 485 IIFVSRKAVADHLSSDLGIRRISVESLHGNREQSDRERALKSFKTGKVRILIATDLASRG 544

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           LD+ DV HV+N+D P   E Y+HR+GRTGRAGR G + TL+ + D K    +  ++E+  
Sbjct: 545 LDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRNDWKIAGELINILERAN 604

Query: 369 DWLNGDLSSL 378
             +  DL S+
Sbjct: 605 QSVPEDLVSM 614


>gi|242009038|ref|XP_002425300.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212509065|gb|EEB12562.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 1014

 Score =  242 bits (617), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 133/370 (35%), Positives = 217/370 (58%), Gaps = 9/370 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++A  G+S KV+  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 349 EWAQCGVSKKVLEILKKNGFEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFR 408

Query: 62  -ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            IL++        P  +I+ PTREL  Q+  + +K+ K+ +L V  + GG     Q  +L
Sbjct: 409 HILDQPPLEETDGPIAIIMTPTRELCMQIGKDCKKFSKSVSLKVVCVYGGTGISEQIAEL 468

Query: 120 ERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGAD+++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 469 KRGADIVVCTPGRMIDMLAANSGRVTNLLRVTYIVLDEADRMFDMGFEPQVMRIIDNVRP 528

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALL 235
            RQT++FSAT   +++ ++   L  P  ++V   S   + +E H  V    +   K   L
Sbjct: 529 DRQTVMFSATFPRQMEALARRILTKPIEVQVGGRSVVCKDVEQHVVVLDEDKKFLKLLEL 588

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             + Q+Q ++   I+F +++++  +L   L K  +   ++HG IDQ  R   + +FK G 
Sbjct: 589 LGIYQNQGSV---IVFVDKQESADDLLKELMKASYPSMSLHGGIDQFDRDSTIIDFKSGK 645

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++L++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  E  +
Sbjct: 646 VKLLIATSVAARGLDVKQLILVVNYDCPNHYEDYVHRCGRTGRAGNKGVAYTFITPEQER 705

Query: 356 HIDAIEKLIE 365
           +   I + +E
Sbjct: 706 YAGEIIRALE 715


>gi|254360747|ref|ZP_04976895.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica PHL213]
 gi|153091317|gb|EDN73291.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica PHL213]
          Length = 411

 Score =  242 bits (617), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 142/381 (37%), Positives = 220/381 (57%), Gaps = 9/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   V+ A+   G+   TPIQ KT P+ L+  D+ G AQTGTGKT +F++     
Sbjct: 10  FIDFPIHANVLNALDSKGFEFCTPIQAKTFPITLKGKDIAGQAQTGTGKTLAFLIATFNH 69

Query: 63  LEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L           PR LIL PTRELA Q+  + E + K+ +L +AL  GG  ++ Q +++E
Sbjct: 70  LLNNEIETSKNQPRALILAPTRELAVQIGADAELFLKHSDLKLALAYGGDGYDKQVQEIE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTR 178
           +G D+L+ T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P    R
Sbjct: 130 KGVDILVGTTGRVIDYVKQGIINLDKIQVIVLDEADRMFDLGFIKDIRYLMRKAPKPSER 189

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237
            TLLFSAT++ ++++++   + N + IE+     T   I E  F   Y     K ALL  
Sbjct: 190 LTLLFSATLSAKVRELAYEDMDNAEYIEIEPLQKTGHRIKEELF---YPSNEDKMALLLT 246

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +   +  +IF N K     +   L   G  V  + G+I Q+ R+ +L NF +G + 
Sbjct: 247 LLEEE-WPERCMIFANTKHKCEEIWQYLSADGHRVGMLTGDIPQKKRLSLLDNFTKGNLD 305

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+AARGL IPDV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +    ++
Sbjct: 306 ILVVTDVAARGLHIPDVTHVFNYDLPDDKEDYVHRIGRTGRAGESGHSISFACERYAVNL 365

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
            AIE+ I  ++     D  SL
Sbjct: 366 PAIEEYIGHQIPVSQYDKESL 386


>gi|325525138|gb|EGD03018.1| ATP-dependent RNA helicase RhlE [Burkholderia sp. TJI49]
          Length = 333

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 122/291 (41%), Positives = 186/291 (63%), Gaps = 3/291 (1%)

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           L PTRELAAQV ++   Y K   L   ++ GG+    Q   L+RG D+++ TPGR+LDH 
Sbjct: 1   LTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHM 60

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
            +  + +++++ILV+DEADRMLDMGFI  I+ + + +P  RQ LLFSAT +DE++ ++++
Sbjct: 61  QQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPRRQNLLFSATFSDEIKALADS 120

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
            L +P  IEV   ++TAE++            +K  LL  L++  +  +  ++F   K  
Sbjct: 121 LLDSPALIEVARRNTTAESVAQKI--HPVDRDRKRELLTHLIREHNWFQV-LVFTRTKHG 177

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
              L   L K G S  AIHGN  Q +R + LS FK  T+Q++VA+D+AARG+DI  + HV
Sbjct: 178 ANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDIDQLPHV 237

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + +  IE+LI++++
Sbjct: 238 VNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREI 288


>gi|225434327|ref|XP_002266157.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297745752|emb|CBI15808.3| unnamed protein product [Vitis vinifera]
          Length = 568

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 128/372 (34%), Positives = 202/372 (54%), Gaps = 11/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D+GL   ++  +    Y +PT IQ + +P+ L   D+ G A+TG+GKTA+F +PM+  
Sbjct: 125 FTDMGLHQSIMKDITFHEYTRPTFIQAQAMPVALSGRDLLGCAETGSGKTAAFAIPMIQH 184

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
            + +    R   P  L+L PTRELA Q+    + + ++ +    A+++GG     Q  +L
Sbjct: 185 CLAQPPVRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLDSFRTAIVVGGTNISEQRSEL 244

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G ++++ TPGR + H   G   ++ I  +V+DEADRMLDMGF P I+ +   +P   Q
Sbjct: 245 RAGVNIVVATPGRFIHHLQEGNTSLSRISFVVLDEADRMLDMGFEPQIREVMQNLPQKHQ 304

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E++ +++ +L NP +++V   S     +    +   ++  K   LL  L+
Sbjct: 305 TLLFSATMPMEIETLAQEYLNNPVQVKVGKVSCPTANVSQ-ILEKVSESEKIDGLLALLV 363

Query: 240 QSQDTMKN-------GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           +     +         I+F  +K     +  +L  QG    A+HG   Q  R   L +F+
Sbjct: 364 EEASQAERCGRPFPLTIVFVERKTRCDEVAEALVAQGLRAVALHGGRSQAEREAALRDFR 423

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+D+A+RGLD+  V HV N D+P   ENY+HRIGRTGRAG  G+A +     
Sbjct: 424 NGATNILVATDVASRGLDVTGVAHVINLDLPKAMENYVHRIGRTGRAGSTGQATSFYTDR 483

Query: 353 DIKHIDAIEKLI 364
           D+  +  I K I
Sbjct: 484 DVFLVAHIRKAI 495


>gi|324507937|gb|ADY43357.1| ATP-dependent RNA helicase DDX17 [Ascaris suum]
          Length = 625

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 147/423 (34%), Positives = 227/423 (53%), Gaps = 27/423 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            +F + G  P+V+  +L + + +PT IQ  + P+     D+  IA+TG+GKT +F+LP +
Sbjct: 192 FEFNESGF-PEVLVNMLYSSFERPTIIQSISWPIASSGRDIVSIAKTGSGKTLAFILPGI 250

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             T  +  R R   P  L+L PTRELA QV +   +Y K   L+V  L GG    +Q + 
Sbjct: 251 IHTTKQPPRGRGEGPSVLVLLPTRELAQQVQEVSREYCKAMGLSVTCLFGGAARGSQARD 310

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG DV I TPGR+LD    G   +     LV+DEADRMLDMGF P I+ I S +   R
Sbjct: 311 LERGVDVAIATPGRLLDFLESGTTNLRRCSYLVLDEADRMLDMGFEPQIRKIVSQIRPDR 370

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT   E++ ++ +F  +   + V +    A       V    +Y K+  ++  L
Sbjct: 371 QTLMFSATWPKEVRALASDFQSDHAFLNVGSLELAANHNITQVVEVVEEYQKQGRMMTLL 430

Query: 239 --LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             + +Q   K  ++F   K+   +L  S+ + G+    IHG+ +Q  R  +LS FK G  
Sbjct: 431 TDIMNQPECKT-LVFVETKRKADDLTRSMRRDGWPTLCIHGDKNQGERDWVLSEFKSGKT 489

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARGLD+ D+  V N+D PN +E+Y+HRIGRT R  + G A+T     +   
Sbjct: 490 PILLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTARCEKKGTAYTFFTPSNAPK 549

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              + K++E        + + + PP E +++A  +  R        STG  R    YS +
Sbjct: 550 ARDLIKVME--------EANQVVPP-ELVELADRSSGR--------STGRSR----YSGK 588

Query: 417 KSH 419
           +S+
Sbjct: 589 RSY 591


>gi|260577895|ref|ZP_05845826.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
           43734]
 gi|258603989|gb|EEW17235.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
           43734]
          Length = 458

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 135/379 (35%), Positives = 208/379 (54%), Gaps = 22/379 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+ LG++ ++  A+  A       IQ  T+P+ L+  DV G A+TG GKT  F +P+L  
Sbjct: 24  FSSLGVAAEITEALATANITHAFAIQEYTLPIALKGSDVIGQARTGMGKTLGFGIPVLDR 83

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNF------------------EKYGKNYNL 101
           + +          PR LI+ PTREL  QV D+                    K  K   L
Sbjct: 84  VFDDATVTAPDGTPRALIVVPTRELCLQVTDDLTLAARNLRVPVETEGASQRKKSKTRAL 143

Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
            V  + GG+ F+ Q   L RG DV++ TPGR+LD   +G L +N +EI+V+DEAD MLD 
Sbjct: 144 QVHAVYGGVRFDKQTTALARGVDVVVGTPGRLLDLAQQGHLQLNTVEIVVLDEADEMLDQ 203

Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
           GF+  +++I +     RQT+LFSATM   +  ++  F+++P  I+ ++ ++ A       
Sbjct: 204 GFLDDVRSIITQTSPQRQTMLFSATMPGPIAALTRTFMRHPVLIQADSAATEATHESTKQ 263

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
           V   +    + + L ++LQS    ++ I+F   K+    +   L K GF V A+HG++ Q
Sbjct: 264 VVFQSHKLDRLSALARILQSPGRGRS-IVFARTKRQAAGVAEELAKLGFRVGAVHGDMRQ 322

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
             R + L  F+   + +MVA+D+AARG+DI DV HV N+ VP+    Y+HRIGRTGRAG 
Sbjct: 323 NDREESLDEFRRNEVDVMVATDVAARGIDIEDVTHVINYQVPDDERTYVHRIGRTGRAGN 382

Query: 342 HGKAFTLVAKEDIKHIDAI 360
            G A +L+  +++   +AI
Sbjct: 383 TGTAVSLIGWDEVARWNAI 401


>gi|256821842|ref|YP_003145805.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256795381|gb|ACV26037.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 460

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 136/355 (38%), Positives = 212/355 (59%), Gaps = 8/355 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P ++  + D G+ + TPIQ   +P VL+  DV   A+TG+GKTA F    L I
Sbjct: 6   FSTLALQPALIANLADLGFERMTPIQADALPQVLEGKDVIAQAKTGSGKTAVF---GLGI 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           LEK   +    ++++L PTRELA QVA+   +  +   N+ +  L GG P   Q   L+ 
Sbjct: 63  LEKLDPKNFSVQSMVLCPTRELAEQVAEEIRRLARPIANVKILTLCGGTPLRPQADSLKH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  +  L ++ I  LV+DEADRMLDMGF   +  I + +P  RQTL
Sbjct: 123 GAHIVVGTPGRIVDHLEKQTLDLDAISTLVLDEADRMLDMGFEDSMDAIVNELPRQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   ++Q ++E  +  P  ++      ++ +I+  F     +  +  A+   LL+ 
Sbjct: 183 LFSATYPPQIQAIAERVMVKPVLVQALEKHDSS-SIKQDFYRISDEGERDVAVRLLLLKY 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + +IFCN K++V +L   L++ GFSV A+HG+++Q+ R + L  F   ++ +MVA
Sbjct: 242 RP--DSTVIFCNTKRHVKDLTQELKRHGFSVLALHGDLEQKERDQALIRFANNSVSIMVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +D+AARGLDI  +  V N+ + +  E ++HRIGRTGRAG  G A ++V  ++ KH
Sbjct: 300 TDVAARGLDIDSLDLVINYHIASDPEIHVHRIGRTGRAGNKGHACSIVISKE-KH 353


>gi|322796814|gb|EFZ19232.1| hypothetical protein SINV_01003 [Solenopsis invicta]
          Length = 1201

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 210/368 (57%), Gaps = 6/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +    P V+  +   GY++PTPIQ +  P+ L   D+  IAQTG+GKT  ++LP +  
Sbjct: 114 FEEGNFPPYVMENIHREGYLRPTPIQAQGWPIALSGRDLVAIAQTGSGKTLGYILPAIVH 173

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+ + R +    P  LIL PTRELA Q+ +    +G+   +    + GG P   Q   LE
Sbjct: 174 IIHQPRISSGDGPIVLILAPTRELAQQIQEVANSFGEMAAVRNTCIFGGAPKGPQAHDLE 233

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G ++ I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 234 KGIEICIATPGRLIDFLEKGTTNLYRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 293

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E++ ++E+FL +   + + + + +A       +    +Y K   L + LLQ
Sbjct: 294 LMWSATWPKEVRALAEDFLTDYIHLNIGSLTLSANHNITQIIDVCQEYEKDLKLYR-LLQ 352

Query: 241 SQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              T K    IIF   K+ V ++  ++ ++G+   +IHG+ +Q+ R  +L  F+ G   +
Sbjct: 353 EIGTEKENKTIIFVETKRKVDDITKNIRREGWQAVSIHGDKNQQERDHVLQEFRNGKAPI 412

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI- 357
           +VA+D+AARGLD+ DV +V NFD P+ +E+YIHRIGRTGR  + G A+      ++KH  
Sbjct: 413 LVATDVAARGLDVDDVKYVINFDFPSSSEDYIHRIGRTGRKRQTGTAYAFFTTHNMKHAG 472

Query: 358 DAIEKLIE 365
           D IE L E
Sbjct: 473 DLIEVLRE 480



 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 136/387 (35%), Positives = 212/387 (54%), Gaps = 5/387 (1%)

Query: 3    FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
            F + G    V+  +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP +  
Sbjct: 707  FEEGGFPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 766

Query: 62   ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I  + R +R   P  LIL PTRELA Q+      +G +  +    + GG P   Q + LE
Sbjct: 767  INHQPRLSRNDGPIALILAPTRELAQQIQQVASDFGMSSQVRNTCIFGGAPKGPQARDLE 826

Query: 121  RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            RG ++ I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 827  RGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQT 886

Query: 181  LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            L++SAT   E++ ++E FL +  +I + +    A       V    +Y K+  L++ L +
Sbjct: 887  LMWSATWPKEVRNLAEEFLTDYIQINIGSLQLAANHNILQIVDVCEEYEKESKLMKLLEE 946

Query: 241  -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             S +     IIF   K+ V ++  ++ + G+    IHG+  Q+ R  +L+ F+     ++
Sbjct: 947  ISNEPENKTIIFVETKRKVDDITRAINRYGWQAIGIHGDKSQQERDYVLNQFRNSRSAIL 1006

Query: 300  VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            VA+D+AARGLD+ DV  V N D P+ +E+Y+HRIGRTGR+ R G A+      +      
Sbjct: 1007 VATDVAARGLDVEDVKFVINLDYPSNSEDYVHRIGRTGRSQRTGTAYAFFTPGNAHKAGD 1066

Query: 360  IEKLIEKKVDWLNGDLSSL--NPPLEK 384
            + +++E+    +N  L  L  NP + K
Sbjct: 1067 LIQVLEEAKQVVNPKLYDLSRNPGVYK 1093


>gi|90075746|dbj|BAE87553.1| unnamed protein product [Macaca fascicularis]
          Length = 396

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 206/371 (55%), Gaps = 11/371 (2%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRA 68
            ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        LE+G  
Sbjct: 3   VLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDG 62

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
               P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG ++ I 
Sbjct: 63  ----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIA 118

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL++SAT  
Sbjct: 119 TPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 178

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN- 247
            E+++++E+FL++  +I V     +A       V    +  K   L+Q + +     +N 
Sbjct: 179 KEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENK 238

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   +++A+D+A+R
Sbjct: 239 TIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKGQPERDWVLNEFRSGKAPILIATDVASR 298

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           GLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    + K++E+ 
Sbjct: 299 GLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEA 358

Query: 368 VDWLNGDLSSL 378
              +N  L  L
Sbjct: 359 NQAINPKLMQL 369


>gi|37677247|ref|NP_937643.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|37201792|dbj|BAC97613.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 436

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 141/368 (38%), Positives = 211/368 (57%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS +++ A L   + KPT IQ   IP +L   D+  +A TG+GKT ++ LP+L
Sbjct: 25  MPFSTLSLSSELIHA-LPKDFKKPTDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLL 83

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + LIL PTRELA QV++   + G+   L    L GG+  E Q + L 
Sbjct: 84  ---EKLRVNPEQ-KALILVPTRELATQVSEAINQVGQALGLNAVCLCGGVDKEQQLQALA 139

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ T GR++D  N G L ++NI  LV+DEADR+LDMGF P +QNI +     RQT
Sbjct: 140 TNPHILVATTGRLVDLANNG-LDLSNIHYLVLDEADRLLDMGFWPDVQNIAAQTSSQRQT 198

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT +DEL+  ++  +Q PK++  +  +ST + I         + SK  AL++  L 
Sbjct: 199 AMFSATFSDELKGKAKLLMQAPKQVAAHQENSTNQDIAETLYLVN-KGSKTKALIE--LI 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     ++F   K+N   L   L K G S  A+HG+  Q  R + L+ FK G  Q+++
Sbjct: 256 QKNAWTQALVFIGAKENADGLAKKLNKAGISTNALHGDKSQAEREEALAQFKSGQTQVLI 315

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG  G A +LV   ++  + AI
Sbjct: 316 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVALSLVCHGEMDALSAI 375

Query: 361 EKLIEKKV 368
             L ++++
Sbjct: 376 RHLTQREL 383


>gi|218709165|ref|YP_002416786.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218322184|emb|CAV18298.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 418

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 137/366 (37%), Positives = 203/366 (55%), Gaps = 7/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L+PK V A+  + + KPT IQ   IP ++   DV  +AQTG+GKT +F LP+L
Sbjct: 7   MSFDSLALNPKTVSAI-PSQFNKPTEIQQAVIPTIIAGKDVLALAQTGSGKTLAFGLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V   + +I+ PTRELA+QVA   E      ++    L GG+  E Q ++L 
Sbjct: 66  NSIKHD---VNELQAIIIVPTRELASQVAKALEPIATTLDIKTVTLTGGVDIEIQQQQLL 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+       KL +   + +++DEADR+LDMGF P +Q I S +P   QT
Sbjct: 123 EKPQLVIATPGRLHAVIQENKLELTQCKSIILDEADRLLDMGFWPDVQTIISALPKKHQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL   +E  L NP ++  +  +S    IE        + SK  AL+   L 
Sbjct: 183 LLFSATLPKELISQTEALLVNPVKVTTHQENSVVAAIEETLYLVN-KGSKAQALIA--LL 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +Q      ++F   K N   L   L K   SV A+HGN +Q  R + L +FK G  ++++
Sbjct: 240 NQHAWSQVLVFIGAKDNADALTKRLSKAKISVNALHGNKNQEEREQALESFKNGKTRVLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+ I  +  V NFD+P+ +  Y+HR+GRT RAG  G A +LV+  +  +++AI
Sbjct: 300 ATDVMARGIHIDQLPVVINFDLPSHSATYVHRVGRTARAGSTGSAISLVSHSETDYLNAI 359

Query: 361 EKLIEK 366
             L  K
Sbjct: 360 RTLTNK 365


>gi|19074653|ref|NP_586159.1| putative ATP-DEPENDENT RNA HELICASE [Encephalitozoon cuniculi
           GB-M1]
 gi|74621115|sp|Q8SR63|RRP3_ENCCU RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|19069295|emb|CAD25763.1| putative ATP-DEPENDENT RNA HELICASE [Encephalitozoon cuniculi
           GB-M1]
          Length = 400

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 214/371 (57%), Gaps = 10/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F DL +   ++    + G  +PT +Q + IP VL   DV  ++QTG+GKT +FVLP++
Sbjct: 1   MEFGDLRIDESLIKTCQEKGITRPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIV 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + +L+K R+       L++ PTREL++Q+A+ F  + +   L V LL+GG  F  Q  +L
Sbjct: 61  SHLLQKNRSFY----CLVVAPTRELSSQIAECFNMF-QATGLRVCLLVGGANFNVQANQL 115

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   V++ TPGRI +H  + K      +   V+DEADR  +  F+  ++ I   +   R
Sbjct: 116 SKRPHVVVGTPGRIAEHVLKTKSFRTERVRKFVLDEADRFFEQDFVEDLETIIPSLREKR 175

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLF+ATM+DE+ K+S + L+ PK I       T   ++  ++    ++ K  AL++ L
Sbjct: 176 QTLLFTATMSDEISKLSSSILKRPKTIRTAEKYETVPALKEYYLFVAMKW-KNSALVELL 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             SQ    + I+F +       +  +L + GF   A+HG + Q  R + + +FKE    +
Sbjct: 235 EMSQGM--SVIVFVSMCVTARVMSLALARLGFCSEALHGELSQEKREEAMRSFKESRFNV 292

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V +DL +RGLDI  V  V NFDVP   ++YIHR+GRT RAGR G A TLV + D++ I 
Sbjct: 293 LVCTDLGSRGLDISHVDLVINFDVPKSGKDYIHRVGRTARAGRSGTAITLVTQYDVEQIQ 352

Query: 359 AIEKLIEKKVD 369
            IE  +EKK++
Sbjct: 353 KIEFTLEKKLE 363


>gi|157117281|ref|XP_001653010.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108883352|gb|EAT47577.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 799

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 127/355 (35%), Positives = 211/355 (59%), Gaps = 7/355 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G   +++ A+  + Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 281 FAHFGFDEQLMKAIRKSEYTQPTPIQAQGVPAALSGRDIIGIAKTGSGKTAAFLWPMLVH 340

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +  +K       P  LIL PTREL+ Q+    +K+GK YN++V    GG     Q+K LE
Sbjct: 341 IMDQKELGPGDGPIGLILAPTRELSLQIYQEAKKFGKIYNISVCCCYGGGSKWEQSKALE 400

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA++++ TPGR++D        +  +  LV+DEAD+M ++GF P +++I + V   RQT
Sbjct: 401 QGAEIVVATPGRMIDMVKMKATNLQRVTYLVLDEADKMFNLGFEPQVRSICNHVRPDRQT 460

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    +++++ + L +P RI         E I    +       K   LL ++++
Sbjct: 461 MLFSATFKKRIERLARDVLTDPVRIMHGDLGEANEDITQHVIVMNNPAHKWNWLLAKMVE 520

Query: 241 --SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S+ T+   +IF  +K +   + ++L  + +    +HG++DQ  R  +++ F++  +++
Sbjct: 521 LLSEGTV---LIFVTKKADAEQVANNLRLKEYDPVLLHGDMDQADRNIVITRFRKREVEI 577

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           MVA+D+AARGLDIP + +V N+D+    + + HR+GRTGRAG  G A+TLV  +D
Sbjct: 578 MVATDVAARGLDIPHIKNVINYDIARDIDTHTHRVGRTGRAGEKGTAYTLVVDKD 632


>gi|59713337|ref|YP_206112.1| ATP-dependent RNA helicase DbpA [Vibrio fischeri ES114]
 gi|59481585|gb|AAW87224.1| ATP-dependent RNA helicase, specific for 23S rRNA [Vibrio fischeri
           ES114]
          Length = 462

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 135/363 (37%), Positives = 207/363 (57%), Gaps = 7/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P ++  +   GY + TPIQ +++P +L+  DV    +TG+GKTA+F L +L  
Sbjct: 6   FSSLDLHPSLLQNLETLGYNEMTPIQAQSLPFMLKGKDVIAQGKTGSGKTAAFGLGLLAN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA    K  +  +N+ V  L GG+PF  Q   LE 
Sbjct: 66  LNVKRFRVQ---SLVLCPTRELADQVAKEIRKLARAIHNIKVLTLCGGVPFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ +H  +G L ++N+   V+DEADRML+MGF   I  +    P  RQ L
Sbjct: 123 GAHIIVGTPGRVEEHLRKGYLNLDNLNTFVLDEADRMLEMGFQDAIDAVLDHAPVKRQNL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   +++ +++  + +P   +           +H F      +  +   LQ LL  
Sbjct: 183 LFSATFPPQIKSIADRIMNDPIMTKAEETVENTSINQHFF--KVGDFEDRLEALQILLLK 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ +IFCN K+    +   L    FSV A+HG+++QR R K L  F   +  ++VA
Sbjct: 241 HQP-ESTVIFCNTKRVTQEVADELRHYDFSVTALHGDLEQRDRDKALVRFANKSTSILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V NF++    E ++HRIGRTGRAG  G A +L  ++++ +I  IE
Sbjct: 300 TDVAARGLDIESLDAVVNFELSRDPEVHVHRIGRTGRAGNKGIALSLFNEKEMHNIAQIE 359

Query: 362 KLI 364
           + +
Sbjct: 360 EYM 362


>gi|86147398|ref|ZP_01065711.1| ATP-dependent RNA helicase SrmB [Vibrio sp. MED222]
 gi|218708540|ref|YP_002416161.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus LGP32]
 gi|85834826|gb|EAQ52971.1| ATP-dependent RNA helicase SrmB [Vibrio sp. MED222]
 gi|218321559|emb|CAV17511.1| ATP-dependent RNA helicase srmB [Vibrio splendidus LGP32]
          Length = 421

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 214/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA+L L+ +++ A+ + GY +PT IQ + IP  L   DV   A TGTGKTASFVLP L  
Sbjct: 5   FAELDLNQELLKAIDEMGYERPTQIQAEAIPQALDGRDVLASAPTGTGKTASFVLPALQY 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +    R LIL PTRELA Q+ +   +  K  +L +  + GG+ ++     L  
Sbjct: 65  LLDFPRKKSGPARMLILTPTRELAMQITEQARELAKYTSLNIFTITGGVMYQEHADILST 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR++++    +     IE LV+DEADRMLDMGF P +  +++   + +QTL
Sbjct: 125 TQDIVVATPGRLMEYIEGERFDCRAIEWLVLDEADRMLDMGFGPVVDRLSAECRWRKQTL 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLL 239
           LFSAT+  + ++  +E+ L+NP  I+  +     + I   +  A  A++  K  +L+ ++
Sbjct: 185 LFSATLEGKGIEGFTEDLLKNPAEIDAKSSLRERKKITQWYHRADSAKH--KLDILKHII 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  IIF   +  + +L   LE        I G + Q  R   +S F++G+I ++
Sbjct: 243 TEQ--AERSIIFLKTRDRLGDLRAQLESAQIPCVWIQGEMPQDRRNNAISRFRDGSINVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A +++   D   I+ 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAVSIIEAHDQLMIER 360

Query: 360 IEKLIEKKV 368
           + +  E  +
Sbjct: 361 VARYTEDAI 369


>gi|332525438|ref|ZP_08401597.1| ATP-dependent RNA helicase DbpA [Rubrivivax benzoatilyticus JA2]
 gi|332108706|gb|EGJ09930.1| ATP-dependent RNA helicase DbpA [Rubrivivax benzoatilyticus JA2]
          Length = 473

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 140/386 (36%), Positives = 211/386 (54%), Gaps = 15/386 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LSP V+  +   GY   TPIQ   +P  L   D+   A+TG+GKTA+F LP+L  
Sbjct: 13  FSTLPLSPAVLANLQQLGYECMTPIQAAALPPALAGRDLIAQAKTGSGKTAAFSLPLLAR 72

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+  R   +    L+L PTRELA QV+    +  +   N+ V  L GG     Q   LE 
Sbjct: 73  LDAKRFATQ---ALVLCPTRELAEQVSQEIRRLARAEDNVKVLTLCGGAAIRPQLASLEH 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTRQ 179
           GA V++ TPGR+LDH  RG L +  +   V+DEADRMLDMGF   I  +    P    RQ
Sbjct: 130 GAHVVVGTPGRVLDHLERGSLALEALTTFVLDEADRMLDMGFAEDIAAVARHCPPPSKRQ 189

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  D++ K++  +L++P+ + +    + ++ +E  +  T +Q      LL Q  
Sbjct: 190 TLLFSATYPDDVAKLAARYLRDPQEVRLAETHAASQIVERFYEVTESQRLHAVGLLLQRF 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + + T+     FCN K+   +L   L+ QG     +HG+++QR R ++L  F   +  ++
Sbjct: 250 RPESTLA----FCNTKQQCRDLVAVLQAQGIVALELHGDLEQRDRDQVLVRFAHRSASVL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N D+    E + HRIGRTGRAG  G  F L + +++  +  
Sbjct: 306 VATDVAARGLDISKLEAVINVDITPEPEVHTHRIGRTGRAGESGLVFNLASLDEMGRVGR 365

Query: 360 IEKLIEKKVDW-----LNGDLSSLNP 380
           I+++  ++  W     L  +L+   P
Sbjct: 366 IDEMQGRQSVWHPLAELEAELAKAGP 391


>gi|303283946|ref|XP_003061264.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457615|gb|EEH54914.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 809

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 134/363 (36%), Positives = 206/363 (56%), Gaps = 4/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F DL LS +++ A    GY  PTPIQ   +PL L   D+CG A TG+GKTA+F+LP+L  
Sbjct: 180 FNDLNLSRQLIRACTALGYDVPTPIQAAVVPLALTGRDICGRAVTGSGKTAAFMLPLLER 239

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +G         L+L PTRELA QV     +  +  ++  AL++GG+    Q  +L  
Sbjct: 240 MLHRGARAAAATHVLVLVPTRELAVQVHQMTMRLAQFTSIRAALVVGGLSANTQAAELRT 299

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++++ TPGR++DH  N   + + ++  LV+DEADR+L+MGF+  I+ I    P  RQT
Sbjct: 300 RPEIVVATPGRLIDHVRNTHSVGLEDLAALVLDEADRLLEMGFLEEIREIVRHCPTRRQT 359

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLL 239
           +LFSAT+T  +Q+++E  +++P R+  +   +T  T+ E          S K A L  L+
Sbjct: 360 MLFSATLTSGVQELAEFSMKHPARLSADQIGTTPGTLTEEVLRLRPGAASMKEAHLMALV 419

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T K+ I+F   K+    L   +   G     +HG++ Q  R+  L +F+ G    +
Sbjct: 420 NRTFTKKS-IVFSRTKQQAHRLKIVMGLAGIVAAELHGDLSQTQRLAALESFRVGEASHL 478

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V ++D P    +Y+HR+GRT RAG+ G A T + + D K + A
Sbjct: 479 VATDVAARGLDIAGVDAVISYDAPRTLASYLHRVGRTARAGKRGTALTFMEESDRKLVKA 538

Query: 360 IEK 362
           + K
Sbjct: 539 VSK 541


>gi|145636978|ref|ZP_01792642.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
 gi|145269836|gb|EDK09775.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
          Length = 415

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 139/372 (37%), Positives = 215/372 (57%), Gaps = 10/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   +    +   PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 71  LLTHQDPNLKYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQVI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P    
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           R T+LFSAT++ ++++++   + +P+ IE+     T   I E  F   Y     K ALL 
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELF---YPSNQDKMALLL 247

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ +   +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G +
Sbjct: 248 TLMEDE-WPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDL 306

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   +
Sbjct: 307 DILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMN 366

Query: 357 IDAIEKLIEKKV 368
           + AIE+ I   +
Sbjct: 367 LPAIEEYIGHSI 378


>gi|269965345|ref|ZP_06179465.1| ATP-dependent RNA helicase, DEAD box family [Vibrio alginolyticus
           40B]
 gi|269829991|gb|EEZ84220.1| ATP-dependent RNA helicase, DEAD box family [Vibrio alginolyticus
           40B]
          Length = 447

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 136/389 (34%), Positives = 211/389 (54%), Gaps = 10/389 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + K T IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 5   LQFKDLGLDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 64

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K ++   + PR +IL PTRELA QV           +   AL++GG  F  Q K L
Sbjct: 65  HKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYEAALILGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGR+ DH +   L ++ +E L++DEADRMLD+GF P ++ I       R 
Sbjct: 125 RRYPKFIVATPGRLADHLDHRSLYLDGLETLILDEADRMLDLGFAPELRRIHKAAKHRRR 184

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+   ++ +++   L  PKRI +   +   + I   F         K A+L +
Sbjct: 185 QTLMFSATLDHADVNEIAAEMLNAPKRIAIGVSNEEHKDITQKFYLC-DHLDHKEAILDR 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L S+   +  IIF   + +   L   L ++     A+ GN++Q  R  I+S F+    +
Sbjct: 244 VL-SEAEYRQVIIFTATRDDTERLTEKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFK 302

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLDI  V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D    
Sbjct: 303 ILVTTDVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSF 362

Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNPP 381
             +E  +++ +++     L G    L PP
Sbjct: 363 KRVEAYLQQDLEFSVFEDLKGKFKGLKPP 391


>gi|256824898|ref|YP_003148858.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
 gi|256688291|gb|ACV06093.1| DNA/RNA helicase, superfamily II [Kytococcus sedentarius DSM 20547]
          Length = 741

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 137/395 (34%), Positives = 211/395 (53%), Gaps = 18/395 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+   +V  +   G     PIQ  T+P  L   D+ G  +TG+GKT +F LP +  
Sbjct: 246 FAELGVPQVLVERLARDGISTAFPIQAATLPDSLAGRDLLGRGRTGSGKTLAFGLPTIAR 305

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE GRA+   PR +IL PTRELA QV+D  + +     L   L+ GG+P+  Q   LERG
Sbjct: 306 LEGGRAQRNKPRAVILTPTRELAMQVSDALQPFAHVAGLKHKLVAGGLPYPPQISALERG 365

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI TPGR++D   +G   ++ +EI V+DEAD M +MGF+P +  I  L+P   Q +L
Sbjct: 366 LDILIATPGRLIDLIEKGAADLSAVEIAVLDEADHMAEMGFLPEVTQIMDLMPSGGQRML 425

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ + + ++ EN+L +P     +  +++  T+EH     +  + K        L +Q
Sbjct: 426 FSATLDNGIDQLVENYLVDPVTHSTDDATASVTTMEHRAFLVHPHHKK-------TLTNQ 478

Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++G  ++F   K     +   L + G    A+HG ++Q  R ++L+ FK+G + ++V
Sbjct: 479 IAARDGRTVVFVRTKLGADRVAEQLRESGVFAAALHGGLNQAQRNRVLAAFKDGGLPVLV 538

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-------- 352
           A+D+AARG+ + DV  V   D P   ++Y+HR GRT RAG  G   TL            
Sbjct: 539 ATDVAARGIHVDDVSMVLQVDPPADHKDYLHRAGRTARAGGKGVVVTLALPHQKRTMQRL 598

Query: 353 -DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
            D   +DA  + +E   D L     +   P E +D
Sbjct: 599 LDQAGVDAKPQTMEPDSDELVAITGADVQPREAVD 633


>gi|241953571|ref|XP_002419507.1| ATP-dependent DEAD-box RNA helicase, putative [Candida dubliniensis
           CD36]
 gi|223642847|emb|CAX43102.1| ATP-dependent DEAD-box RNA helicase, putative [Candida dubliniensis
           CD36]
          Length = 667

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 208/364 (57%), Gaps = 23/364 (6%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVR-------- 71
           + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+    KG A V         
Sbjct: 207 FTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMKGPAPVPESNGAFSS 266

Query: 72  ---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
               P TL++ PTREL +Q+ +  +K+     +   ++ GG     Q + ++RG D+L+ 
Sbjct: 267 HKVYPTTLVMAPTRELVSQIYEESKKFSYRSWVRACVVYGGADIGQQMRNMDRGCDLLVA 326

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFS 184
           TPGR+ D  +RGK+ + NI  LV+DEADRMLDMGF P I+ I           RQTL+FS
Sbjct: 327 TPGRLKDLLDRGKVSLANIRYLVLDEADRMLDMGFEPQIRYIVDECDMPAVKDRQTLMFS 386

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT   ++Q ++ +FL++   + V    ST+E I    +  Y +  +K +++  LL + + 
Sbjct: 387 ATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKIL--YVEDDEKKSVILDLLSANE- 443

Query: 245 MKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             NG  I+F   K+   NL   L  QGF   AIHG+  Q  R K L+ FK G   ++VA+
Sbjct: 444 --NGLTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPILVAT 501

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
            +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A     + +   +  + +
Sbjct: 502 AVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNIVKGLVE 561

Query: 363 LIEK 366
           L+ +
Sbjct: 562 LLSE 565


>gi|121604377|ref|YP_981706.1| DEAD/DEAH box helicase domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120593346|gb|ABM36785.1| DEAD/DEAH box helicase domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 649

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 142/416 (34%), Positives = 228/416 (54%), Gaps = 53/416 (12%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR----------HDVCGIAQTGTGKT 52
           F  LGL+ +++ AV D G+ +PT +Q+ TIP  +Q            D+   +QTG+GKT
Sbjct: 52  FVKLGLAKELLQAVADMGFTQPTSVQMATIPKAMQALDADPKAPKFTDLLVSSQTGSGKT 111

Query: 53  ASFVLPMLTIL-----------------------EKGRARVRMPR--------------- 74
           A+F+LP+L  L                        +G A ++ P+               
Sbjct: 112 AAFLLPVLHTLLKQQEEAERNERAEFERLSAEAVARGEAPLKKPKRKDPTNMRNFKAATP 171

Query: 75  -TLILEPTRELAAQV-ADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
             LIL PTRELA QV AD  +       L VA ++GGIP++ Q  KL+  AD+++ TPGR
Sbjct: 172 GALILCPTRELAQQVCADAIDLVRHCRGLRVANVVGGIPYQLQIAKLQ-NADLVVATPGR 230

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           +LD     ++ ++ ++ LV+DEADRMLD+GF   +  +  L    +QT++FSAT    + 
Sbjct: 231 LLDLQRSMQIKLDQVQFLVVDEADRMLDLGFADDLTEVNQLTIERKQTMMFSATFAPRIM 290

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           +++   ++ P+R+E+++P     +I    +      + K  LL   L+   T+   I+F 
Sbjct: 291 QLATRVMRQPQRVEIDSPHEKHASITQSLLWA-DNMTHKRKLLDHWLRDT-TINQAIVFA 348

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             +     L + L ++GFS  A+HG + Q  R + L  F++G +Q++VA+D+AARGLD+P
Sbjct: 349 CTQVECDGLANDLVQEGFSAVALHGALGQGLRNRRLMAFRDGRVQILVATDVAARGLDVP 408

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            + HV N+ +P +AE+Y+HRIGRTGRAGR G+A T+    D + I  IE   ++ +
Sbjct: 409 TITHVINYGLPMKAEDYVHRIGRTGRAGREGQAITIAEFRDRRKIQDIEHYTQQNL 464


>gi|112983588|ref|NP_001037347.1| vasa-like [Bombyx mori]
 gi|1944405|dbj|BAA19572.1| BmVLG [Bombyx mori]
          Length = 601

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 139/378 (36%), Positives = 216/378 (57%), Gaps = 20/378 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   V+  VL AGY KPTPIQ   IP+++   D+ G AQTG+GKTA+F++P++ +
Sbjct: 182 FETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIINM 241

Query: 63  L---------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
           L         E G A+   P+ +I+ PTREL  Q+ +   K+     L VA+  GG    
Sbjct: 242 LLQDPKDLISENGCAQ---PQVIIVSPTRELTLQIFNEARKFSYGSVLKVAVAYGGTAVR 298

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT-- 171
            Q   + RG  +L+ TPGR+ D   R ++   ++  +V+DEADRMLDMGF+P I+ +   
Sbjct: 299 HQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSIEKMMLH 358

Query: 172 -SLVPFT-RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
            ++V  T RQTL+FSAT  +++Q ++  FL N   + V      +  +E  F+    +Y 
Sbjct: 359 PTMVETTKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEV-TKYE 417

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+ +L +QL++  D  K  ++F   K+N   +   L +Q     +IHG+  QR R + L 
Sbjct: 418 KRNSL-KQLIEENDG-KRILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQ 475

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           NFK G   ++VA+ +AARGLDI +V  V N+D+P   + Y+HRIGRTGR G  GKA +  
Sbjct: 476 NFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFY 535

Query: 350 -AKEDIKHIDAIEKLIEK 366
            + +D+  +  + K++ +
Sbjct: 536 DSDQDLALVADLSKILRQ 553


>gi|307181491|gb|EFN69083.1| Probable ATP-dependent RNA helicase DDX23 [Camponotus floridanus]
          Length = 669

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 208/379 (54%), Gaps = 41/379 (10%)

Query: 10  PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI------ 62
           PK +  ++D  GY   TPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L        
Sbjct: 249 PKEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLLWITNLPK 308

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E+     + P ++IL PTRELA Q+ +   K+G+   +   +++GG+  E Q  +L  G
Sbjct: 309 IERLDEADQGPYSIILAPTRELAQQIEEETNKFGQPLGIRTVVVVGGLSREEQGFRLRMG 368

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177
            +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P T     
Sbjct: 369 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 428

Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTA 214
                               RQT++F+ATM   +++++  +L+ P  +    V  P+   
Sbjct: 429 NEDAENEEKLLANYNTKKKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSVGKPTERT 488

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           E I H       +  K+  L++ L  S+      IIF NQKK    L   LEK G++ C 
Sbjct: 489 EQIVHIM----GEADKRKKLMEIL--SRGVEPPVIIFVNQKKGADVLAKGLEKFGYNACT 542

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG   Q  R   L++ K G+  ++VA+D+A RG+DI DV  V N+D+    E+Y HRIG
Sbjct: 543 LHGGKGQEQREYALASLKSGSKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIG 602

Query: 335 RTGRAGRHGKAFTLVAKED 353
           RTGRAG+ G A +   K+D
Sbjct: 603 RTGRAGKAGLAISFCTKDD 621


>gi|332162701|ref|YP_004299278.1| ATP-dependent RNA helicase SrmB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606806|emb|CBY28304.1| ATP-dependent RNA helicase SrmB [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666931|gb|ADZ43575.1| ATP-dependent RNA helicase SrmB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860494|emb|CBX70798.1| ATP-dependent RNA helicase srmB [Yersinia enterocolitica W22703]
          Length = 441

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 137/354 (38%), Positives = 204/354 (57%), Gaps = 4/354 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP L 
Sbjct: 5   NFSELDLDERLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K+  L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I++   + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQT 184

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+  E +++ +E  L  P  +E +      + I+  +         K ALL  LL
Sbjct: 185 LLFSATLEGEAIREFAERILTEPVELEADPSRRERKKIQQWYYRA-DNIEHKTALLVHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +  K+ IIF   ++ V  L   L + G +   + G + Q  R + +    +G + ++
Sbjct: 244 KQPEVQKS-IIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+A+RGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D
Sbjct: 303 VATDVASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHD 356


>gi|307189252|gb|EFN73695.1| Probable ATP-dependent RNA helicase DDX46 [Camponotus floridanus]
          Length = 1028

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 210/363 (57%), Gaps = 7/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G++ K +  +   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 368 WAQCGVTKKELEVLKKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFRH 427

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL++   A    P  LI+ PTREL  Q+  + +K+ K+  L+   + GG     Q  +L+
Sbjct: 428 ILDQPPLADGDGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHVCVYGGTGISEQIAELK 487

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   V   
Sbjct: 488 RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIMENVRPD 547

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT   +++ ++   L  P  ++V   S   + +E   V    +  K   LL+ 
Sbjct: 548 RQTVLFSATFPRQMEALARRILTRPVEVQVGGRSVVCKDVEQ-HVVVLEEDQKFYKLLEI 606

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   QD   + IIF ++++N   L   L K  +S  ++HG IDQ  R   + +FK G  +
Sbjct: 607 LGHYQDK-GSIIIFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTILDFKAGRTK 665

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  E  ++ 
Sbjct: 666 LLVATSVAARGLDVKHLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITSEQERYA 725

Query: 358 DAI 360
             I
Sbjct: 726 GDI 728


>gi|297521633|ref|ZP_06940019.1| ATP-dependent RNA helicase DbpA [Escherichia coli OP50]
          Length = 457

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 135/364 (37%), Positives = 213/364 (58%), Gaps = 8/364 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDW 370
           K++W
Sbjct: 363 KLNW 366


>gi|149197724|ref|ZP_01874774.1| probable ATP-dependent RNA helicase [Lentisphaera araneosa
           HTCC2155]
 gi|149139294|gb|EDM27697.1| probable ATP-dependent RNA helicase [Lentisphaera araneosa
           HTCC2155]
          Length = 482

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 139/363 (38%), Positives = 205/363 (56%), Gaps = 8/363 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ A+  AGY KPTPIQ K++ ++LQ  D    A+TGTGKTA+F +P L
Sbjct: 5   VQFQDLGLKKTILSAIYTAGYKKPTPIQNKSLKIILQGQDALVRAKTGTGKTAAFAIPAL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L   RA V+ P+ LIL P REL  Q++  F K GK   N  VA + GG       K L
Sbjct: 65  QHL---RAEVQHPQVLILTPGRELCKQISQEFIKLGKGLENFRVAEVTGGGKLSGVKKSL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA V+  TPGR++D   +G L  N I +LVIDEADR+ DMGF   + +I   +P + Q
Sbjct: 122 H-GAQVISATPGRLIDIKEQGLLNSNCINMLVIDEADRLFDMGFREAVTSILKDLPKSVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+L SAT TD+++  S+  L+ P  IE  +   + E +E   V+ Y +   K        
Sbjct: 181 TVLCSATFTDDIKNFSKTLLKKPVIIEDRSNIGSEENLEEWAVSVYPENHLKLTEKLLKK 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D +   I+FCN K+ V  +   L+  GF V  +H  +++  R + L  F++  ++++
Sbjct: 241 HKNDQV---IVFCNHKERVDEVAEKLDDMGFDVHPLHSGMEKNVRNQALKLFRDKQVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RG+DIP +  V N+D+P    +Y+HR GRT RAG+ G   +       K I +
Sbjct: 298 VATDVASRGIDIPGLPLVVNYDLPYDFPDYVHRAGRTARAGKSGLVISFYNGRKEKTIKS 357

Query: 360 IEK 362
            E+
Sbjct: 358 FEE 360


>gi|322833585|ref|YP_004213612.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
 gi|321168786|gb|ADW74485.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
          Length = 460

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 222/370 (60%), Gaps = 10/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L  + +  + + GY + TPIQ  ++P +L   DV   A+TG+GKTA+F + +L  
Sbjct: 6   FSALTLPVEQLSNLNELGYTEMTPIQEASLPAILLGQDVRAKAKTGSGKTAAFGIGLLNS 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           +   +    + + L+L PTRELA QV+    +  +   N+ +  L GG     Q + L  
Sbjct: 66  ITVSQF---VAQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQAIGPQLESLVH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI +H  +G L ++ +++LV+DEADRMLDMGF   I+++ S  P  RQTL
Sbjct: 123 PPHIVVGTPGRIQEHLRKGTLKLDELKVLVLDEADRMLDMGFSEDIEDVVSYTPQDRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL-Q 240
           LFSAT  D ++++S  F + P ++E+      A+ I   F+   A   ++ +LL  +L Q
Sbjct: 183 LFSATYPDGIERISSKFQRQPLKVEIEGEDDIAD-IRQIFIE--ADKHQRLSLLAAVLYQ 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q T  + ++FCN K++  ++C  L+ +G S  A++G+++QR R ++L  F  G+ +++V
Sbjct: 240 YQPT--SCVVFCNTKRDCQDVCDDLKAKGISALALNGDLEQRDRDRVLVRFSNGSCRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +G V N+++    E ++HR+GRTGRAG  G A +LV  +++  + A+
Sbjct: 298 ATDVAARGLDIKQLGLVINYELSFDPEVHVHRVGRTGRAGTSGLAVSLVTPQEMPRVTAL 357

Query: 361 EKLIEKKVDW 370
           E    ++  W
Sbjct: 358 EDYTRQRFTW 367


>gi|307191879|gb|EFN75298.1| Probable ATP-dependent RNA helicase DDX5 [Harpegnathos saltator]
          Length = 627

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 135/371 (36%), Positives = 213/371 (57%), Gaps = 12/371 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +    P V+  +   GY +PTPIQ +  P+ L   D+  IAQTG+GKT  ++LP +  
Sbjct: 127 FEEGNFPPYVMEGIRRQGYSQPTPIQAQGWPIALSGRDLVAIAQTGSGKTLGYILPAIVH 186

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+ + R +    P  LIL PTRELA Q+ +    +G++  +    + GG P   Q   L+
Sbjct: 187 IIHQPRLSNGDGPIALILAPTRELAQQIQEVANCFGESAAVRNTCIFGGAPKGPQAHDLD 246

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 247 RGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 306

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALL 235
           L++SAT   E++ ++E+FL +   + + + + +A     + I+ C    + + SK   LL
Sbjct: 307 LMWSATWPKEVRALAEDFLTDYTHLNIGSLTLSANHNITQIIDVC--QEFEKDSKLFRLL 364

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q++   ++     IIF   K+ V ++  ++ + G+   +IHG+ +Q+ R  +L  F+ G 
Sbjct: 365 QEIGNEKENKT--IIFVETKRKVDDITRNIRRDGWQALSIHGDKNQQERDHVLQEFRSGR 422

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+D+AARGLD+ DV +V NFD P+ +E+YIHRIGRTGR  + G A+      ++K
Sbjct: 423 APILVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGRRRQTGTAYAFFTSHNMK 482

Query: 356 HI-DAIEKLIE 365
           H  D IE L E
Sbjct: 483 HAGDLIEVLRE 493


>gi|255713704|ref|XP_002553134.1| KLTH0D09746p [Lachancea thermotolerans]
 gi|238934514|emb|CAR22696.1| KLTH0D09746p [Lachancea thermotolerans]
          Length = 621

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 138/346 (39%), Positives = 197/346 (56%), Gaps = 19/346 (5%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARV---- 70
           ++ A + KPTP+Q  ++P++  R D+   AQTG+GKT  F+ P+L+     G A V    
Sbjct: 164 IIKARFTKPTPVQKYSVPIIAARRDLMACAQTGSGKTGGFLFPVLSESFANGPAPVPEQA 223

Query: 71  -------RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
                    P  ++L PTRELA Q+ D  +K+     +   ++ GG    +Q K+L RG 
Sbjct: 224 SNFYIKKAFPTAVVLAPTRELATQIFDEAKKFTYRSWVRPCVVYGGADIGSQIKELNRGC 283

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQ 179
           D+L+ TPGR+ D   RG++ + NI+ LV+DEADRMLDMGF P I++I           RQ
Sbjct: 284 DLLVATPGRLSDLLERGRISLCNIKYLVLDEADRMLDMGFEPQIRHIVEGCDMPSVDERQ 343

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT   ++Q ++ +FL++   + V    ST+E I    V       KK ALL  L 
Sbjct: 344 TLMFSATFPMDIQHLARDFLKDYVFLSVGRVGSTSENITQ-HVLYVEDMDKKSALLDLLA 402

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S D +   +IF   K+    L   L  Q     AIHG+  Q  R + L+ F+ G   L+
Sbjct: 403 ASDDGLT--LIFVETKRMADALTDFLIMQNLRATAIHGDRSQSERERALAAFRSGKASLL 460

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           VA+ +AARGLDIP+V HV N+D+PN  ++Y+HRIGRTGRAG  G A
Sbjct: 461 VATAVAARGLDIPNVTHVINYDLPNDIDDYVHRIGRTGRAGNTGVA 506


>gi|163800192|ref|ZP_02194093.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           AND4]
 gi|159175635|gb|EDP60429.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           AND4]
          Length = 443

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 137/388 (35%), Positives = 210/388 (54%), Gaps = 10/388 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + K T IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKDLGLDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K ++   R PR +IL PTRELA QV           +   AL++GG  F  Q K L
Sbjct: 61  HKSLKNKSFSARDPRAVILAPTRELAKQVYGELRSMLGGLSYDAALVLGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGR+ DH +   L ++ +E LV+DEADRMLD+GF P ++ I       R 
Sbjct: 121 RRYPKFIVATPGRLADHLDHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHKAAKHRRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+   E+  ++   L  PKRI +   +   + I   F         K A+L++
Sbjct: 181 QTLMFSATLDHAEVNGIASEMLNAPKRIAIGVSNEEHKDITQKFYLC-DHLDHKEAILER 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+  +  +  IIF   + +   L + L ++     A+ GN++Q  R  I+S F+    +
Sbjct: 240 VLEEAE-YRQVIIFTATRDDTERLTNKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RG+DI  V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D    
Sbjct: 299 ILVTTDVASRGIDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSF 358

Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNP 380
             +E  +++ + +     L G    L P
Sbjct: 359 KRVETYLQQDLSFSVLEGLKGKFKGLKP 386


>gi|194745552|ref|XP_001955251.1| GF16329 [Drosophila ananassae]
 gi|190628288|gb|EDV43812.1| GF16329 [Drosophila ananassae]
          Length = 784

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 152/392 (38%), Positives = 223/392 (56%), Gaps = 33/392 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ L+  +   V  A Y KPTP+Q   IP+++   D+   AQTG+GKTA+F++P+L  
Sbjct: 287 FDDVQLTEIIRNNVNLARYDKPTPVQKYAIPIIISGRDLMACAQTGSGKTAAFLVPILNQ 346

Query: 62  ILEKGRA-----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           + E G +           R + P  L+L PTRELA Q+ +  +K+     +  A+L GG 
Sbjct: 347 MYEHGHSAPPQSNRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGN 406

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L+RG  +++ TPGR+ D   RGK+ + NI  LV+DEADRMLDMGF P I+ I
Sbjct: 407 NTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRI 466

Query: 171 TSLV--PFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
              +  P T  RQTL+FSAT   ++Q+++ +FL N   + V    ST+E I    +  Y 
Sbjct: 467 VEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYE 526

Query: 227 QYSKKCALLQQLLQSQDTMKNG---------IIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
           Q  K+  LL  L     +++NG         +IF   KK   +L   L +    V +IHG
Sbjct: 527 Q-DKRSYLLDLL----SSIRNGPEYCKDNLTLIFVETKKGADSLEEFLFQCNHPVTSIHG 581

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           +  Q+ R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P+  E Y+HRIGRTG
Sbjct: 582 DRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTG 641

Query: 338 RAGRHGKAFTLVAKEDIKHI--DAIEKLIEKK 367
           R G  G A +   +++ ++I  D +E LIE K
Sbjct: 642 RMGNLGVATSFFNEKN-RNICSDLLELLIETK 672


>gi|307215190|gb|EFN89962.1| Probable ATP-dependent RNA helicase DDX17 [Harpegnathos saltator]
          Length = 540

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 129/355 (36%), Positives = 204/355 (57%), Gaps = 11/355 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            +F + G    V+  +   G+ +PT IQ +  P+ L   D+ GIA TG+GKT S++LP +
Sbjct: 82  FNFGEAGFPEYVLKEITKQGFNEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPAI 141

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +  +   +R   P  L+L PTRELA Q+    + +G +  +    L GG P  AQ + 
Sbjct: 142 VHINSQPKLSRKDGPIALVLAPTRELAQQIQQVADDFGHSSGIRNTCLYGGAPKGAQARD 201

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G +++I TPGR+LD    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 202 LDSGVEIVIATPGRLLDFLESGKTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 261

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCA 233
           QTL++SAT   E++ ++E+FL++  +I V +    A     + I+ C    Y + +K   
Sbjct: 262 QTLMWSATWPKEVKNLAEDFLKDYAQINVGSLQLAANHNILQIIDVC--QDYEKENKLST 319

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL++++   +     I+F   K+ V  +   +++ G+    IHG+  Q+ R  +L +F+ 
Sbjct: 320 LLKEIMAESENKT--IVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWVLQDFRS 377

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           G   ++VA+D+AARGLD+ DV  V NFD P+ +E+Y+HRIGRTGR  + G A+T 
Sbjct: 378 GKAPILVATDVAARGLDVEDVKFVINFDYPSCSEDYVHRIGRTGRRQKTGTAYTF 432


>gi|5410326|gb|AAD43033.1| RNA helicase [Homo sapiens]
          Length = 1031

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 148/447 (33%), Positives = 241/447 (53%), Gaps = 26/447 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+      + K   L V  + GG     Q 
Sbjct: 434 IMDQRSLEEGEG----PLAVIMTPTRELALQIPKGVRSF-KTLGLRVVCVYGGTGISEQI 488

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 489 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 548

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232
           V   RQT++FSAT    ++ ++   L  P  ++V   S     +E    V    +   K 
Sbjct: 549 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 608

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L    Q   ++   IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK
Sbjct: 609 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 665

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++
Sbjct: 666 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 725

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             ++   I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   
Sbjct: 726 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 778

Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439
           +   +  +   E +K+ K    +Q++D
Sbjct: 779 FDETEQALA-NERKKLQKAALGLQDSD 804


>gi|239993440|ref|ZP_04713964.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii ATCC 27126]
          Length = 459

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 139/364 (38%), Positives = 208/364 (57%), Gaps = 8/364 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           L ++P +  A+   G  + +PIQ +++P  LQ  DV G AQTG+GKT  FV+P L  +E 
Sbjct: 9   LDINPAITKALDSQGIYQLSPIQAQSLPEALQGKDVIGQAQTGSGKTLCFVIPALQHVEV 68

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGAD 124
                +    +IL PTRELA QVA       KN  N+ V  L GG P   Q + L+    
Sbjct: 69  NDFTTQ---AIILCPTRELADQVAQQCRSAAKNIGNIKVTTLCGGQPMGPQIQSLKHSPH 125

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGR++DH  + ++ ++N+++ V+DEADRMLDMGF   ++ I    P   QTLLFS
Sbjct: 126 IIVGTPGRVMDHVEKRRIDLSNVKLRVLDEADRMLDMGFEDDLRIIFGQTPKQVQTLLFS 185

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT T+++++V++ +L NP   +V +  S     +  +      +++  AL   L   Q  
Sbjct: 186 ATFTEQIERVAKQYLHNPVTCKVESQDSKPAITQLGY--NVLPHTRTQALKAVLTHYQP- 242

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            KN I+FCN+K  V  +   L + GFS   + G+++Q  R  +L  F    +Q++VA+D+
Sbjct: 243 -KNAIVFCNRKVQVNEVVEELIEDGFSAAGLQGDLEQHQRTSVLMQFASDALQVLVATDV 301

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           AARGLDI DV  V N+ V    E +IHRIGRT RAG  G A TLV+ ++   +  IE L 
Sbjct: 302 AARGLDIDDVACVINYTVSEEPETHIHRIGRTARAGAQGMAVTLVSDDEEHFLRKIEVLQ 361

Query: 365 EKKV 368
           E  +
Sbjct: 362 ESDI 365


>gi|258516456|ref|YP_003192678.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780161|gb|ACV64055.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 446

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 128/373 (34%), Positives = 218/373 (58%), Gaps = 6/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LG+  K+   + + G  +PTPIQ++ IP+++   D+   +QTGTGKT +F+LP+L 
Sbjct: 12  DFLLLGIRRKINDFLRENGITEPTPIQVQAIPVLMTGKDLLAQSQTGTGKTLAFLLPVLE 71

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +E  + +V+   +LI+ PTRELA Q+    +  G    + +  + GG   E Q KKL+ 
Sbjct: 72  KIEVNKPQVQ---SLIITPTRELALQITGEAKNLGDKLGINILSVYGGQDVERQIKKLKG 128

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH  R  + ++ +  LV+DEAD+ML MGF+  ++ I    P  +QT+
Sbjct: 129 HIHMVIGTPGRLLDHIRRKTISLSGVSKLVLDEADQMLHMGFLEDVEEIIRKSPVKKQTM 188

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++  +++ P  I + +     + I+   V    +  K   L + + ++
Sbjct: 189 LFSATLPPRIRALAARYMRKPADIRIQSRQVILDKIKQ-IVIELEEKEKLTQLCRLIDEN 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q  +   IIFC+ ++    L  +L ++G++   +HG++ Q  R +++  F    +QL+VA
Sbjct: 248 QPYL--AIIFCHTRQRASELAAALIQRGYAADELHGDLSQAKRQQVMKRFSSARLQLLVA 305

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+++D+ +  E+YIHRIGRTGRAG  G A T V   + +++  IE
Sbjct: 306 TDIAARGLDIEGVTHVYSYDISHYLESYIHRIGRTGRAGESGTAVTFVLPGEHRYLRIIE 365

Query: 362 KLIEKKVDWLNGD 374
           +     ++    D
Sbjct: 366 QGTGAAIEKYTAD 378


>gi|56460521|ref|YP_155802.1| ATP-dependent RNA helicase DbpA [Idiomarina loihiensis L2TR]
 gi|56179531|gb|AAV82253.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 474

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 135/354 (38%), Positives = 207/354 (58%), Gaps = 8/354 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L L P ++  + + GY + TP+Q  ++P++L   D    A TG+GKT +F L +L
Sbjct: 21  LHFNQLNLPPALLTRLDEIGYQQMTPVQSLSLPVILNNTDAVVRADTGSGKTTAFALTLL 80

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             LE   A+   P+ L+L PTRELA QVAD   K  K+  N+ +  L GG P   Q   L
Sbjct: 81  AKLE---AKSFSPQALVLCPTRELAHQVADEVRKLAKSMLNIKILTLCGGEPSRIQTNSL 137

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA VL+ TPGR+LDH  +  + ++ +  LV+DEADRML+MGF   +  I   +P TRQ
Sbjct: 138 EHGAHVLVGTPGRVLDHLEQRNVDLSMLTTLVLDEADRMLEMGFQDSLNAIVKHIPKTRQ 197

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    +  ++E      + IE     +  + IE  F   YA  ++  A L   L
Sbjct: 198 TLLFSATYPKNIAALAEQVTTKARNIEAIQEQAKPQ-IEQLF---YAMNNEDSAQLVMNL 253

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +N ++FCN K  V ++ ++L    FSV A+HG ++Q+ R + +  F  G+ +++
Sbjct: 254 LGDHQPENCLVFCNTKNEVKDIFNTLRANKFSVLALHGELEQKDRDQAIIQFSNGSARVL 313

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +A+D+A+RGLDI ++  V + ++ +  + + HRIGRTGRAG+ G A TL+A++D
Sbjct: 314 IATDVASRGLDIAELDLVISVNMAHDLDTHTHRIGRTGRAGKEGVAITLIAEKD 367


>gi|16129304|ref|NP_415859.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89108191|ref|AP_001971.1| ATP-dependent RNA helicase specific for 23S rRNA [Escherichia coli
           str. K-12 substr. W3110]
 gi|157160855|ref|YP_001458173.1| ATP-dependent RNA helicase DbpA [Escherichia coli HS]
 gi|170020291|ref|YP_001725245.1| ATP-dependent RNA helicase DbpA [Escherichia coli ATCC 8739]
 gi|170081022|ref|YP_001730342.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188494462|ref|ZP_03001732.1| ATP-independent RNA helicase DbpA [Escherichia coli 53638]
 gi|194436972|ref|ZP_03069071.1| ATP-independent RNA helicase DbpA [Escherichia coli 101-1]
 gi|238900578|ref|YP_002926374.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           BW2952]
 gi|253773655|ref|YP_003036486.1| ATP-dependent RNA helicase DbpA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161422|ref|YP_003044530.1| ATP-dependent RNA helicase DbpA [Escherichia coli B str. REL606]
 gi|256022943|ref|ZP_05436808.1| ATP-dependent RNA helicase DbpA [Escherichia sp. 4_1_40B]
 gi|300927858|ref|ZP_07143420.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|300948429|ref|ZP_07162531.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300954597|ref|ZP_07167042.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|301022682|ref|ZP_07186535.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|301647156|ref|ZP_07246977.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|307137985|ref|ZP_07497341.1| ATP-dependent RNA helicase DbpA [Escherichia coli H736]
 gi|312971541|ref|ZP_07785716.1| ATP-independent RNA helicase dbpA [Escherichia coli 1827-70]
 gi|331641910|ref|ZP_08343045.1| ATP-independent RNA helicase DbpA [Escherichia coli H736]
 gi|416881|sp|P21693|DBPA_ECOLI RecName: Full=ATP-independent RNA helicase dbpA
 gi|1742212|dbj|BAA14946.1| ATP-dependent RNA helicase specific for 23S rRNA [Escherichia coli
           str. K12 substr. W3110]
 gi|1787605|gb|AAC74425.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           str. K-12 substr. MG1655]
 gi|157066535|gb|ABV05790.1| ATP-independent RNA helicase DbpA [Escherichia coli HS]
 gi|169755219|gb|ACA77918.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
 gi|169888857|gb|ACB02564.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188489661|gb|EDU64764.1| ATP-independent RNA helicase DbpA [Escherichia coli 53638]
 gi|194423955|gb|EDX39943.1| ATP-independent RNA helicase DbpA [Escherichia coli 101-1]
 gi|238860048|gb|ACR62046.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           BW2952]
 gi|242377119|emb|CAQ31847.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           BL21(DE3)]
 gi|253324699|gb|ACT29301.1| DEAD/DEAH box helicase domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973323|gb|ACT38994.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           B str. REL606]
 gi|253977536|gb|ACT43206.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           BL21(DE3)]
 gi|260449522|gb|ACX39944.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
 gi|299881170|gb|EFI89381.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|300318431|gb|EFJ68215.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|300452053|gb|EFK15673.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300464143|gb|EFK27636.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|301074642|gb|EFK89448.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|309701644|emb|CBJ00951.1| ATP-independent RNA helicase [Escherichia coli ETEC H10407]
 gi|310336138|gb|EFQ01338.1| ATP-independent RNA helicase dbpA [Escherichia coli 1827-70]
 gi|315135984|dbj|BAJ43143.1| ATP-dependent RNA helicase DbpA [Escherichia coli DH1]
 gi|323937669|gb|EGB33937.1| DEAD/DEAH box helicase [Escherichia coli E1520]
 gi|323942290|gb|EGB38461.1| DEAD/DEAH box helicase [Escherichia coli E482]
 gi|323962410|gb|EGB57993.1| DEAD/DEAH box helicase [Escherichia coli H489]
 gi|323973547|gb|EGB68732.1| DEAD/DEAH box helicase [Escherichia coli TA007]
 gi|331038708|gb|EGI10928.1| ATP-independent RNA helicase DbpA [Escherichia coli H736]
 gi|332343042|gb|AEE56376.1| ATP-independent RNA helicase DbpA [Escherichia coli UMNK88]
          Length = 457

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 135/364 (37%), Positives = 213/364 (58%), Gaps = 8/364 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDW 370
           K++W
Sbjct: 363 KLNW 366


>gi|196003440|ref|XP_002111587.1| hypothetical protein TRIADDRAFT_23405 [Trichoplax adhaerens]
 gi|190585486|gb|EDV25554.1| hypothetical protein TRIADDRAFT_23405 [Trichoplax adhaerens]
          Length = 463

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 141/362 (38%), Positives = 208/362 (57%), Gaps = 3/362 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ LS  ++ A+   G+  PTPIQ  TIP+ L   D+C  A TGTGKTA+F+LP+L  
Sbjct: 19  FRDINLSRPLLKAISTLGFEHPTPIQSSTIPIALLGKDICACAATGTGKTAAFMLPILER 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     R+ + R L+L PTRELA QV    +   +  ++   L  GG+   +Q   L R 
Sbjct: 79  LIYRPKRIPVTRVLVLVPTRELAIQVFSVGKSLCQYTDIEFCLAAGGLDIASQEAALRRN 138

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR++DH  N     +  IEILV+DEADR +   F   +  +  L P  RQT+
Sbjct: 139 PDIVIATPGRLVDHLHNTPSFDLQGIEILVLDEADRQIHEHFKDQMDELIRLSPKGRQTM 198

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMTDE+++++   L  P R+ +N  +  A  +   F+    A+   + A++  L  
Sbjct: 199 LFSATMTDEVEELATLSLNKPIRLFINRNTDVANNLRQEFIRIRPAREDDREAIIAALCY 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   +  +IF   K  V  L   L   G SV  +HGN+ Q  R++  + FK+G I ++V
Sbjct: 259 RQFN-ERCLIFMPMKWQVHRLRIVLGLLGLSVDELHGNLTQLQRLEAFNRFKKGEIGILV 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARGLDI  V  V N+++P   + Y+HR+GRT RAG+ G++ TLV +++ K +  I
Sbjct: 318 ATDLAARGLDIEGVRTVINYNIPATTKQYVHRVGRTARAGQFGRSITLVVEKERKLLKTI 377

Query: 361 EK 362
            K
Sbjct: 378 VK 379


>gi|148613135|gb|ABQ96192.1| vasa [Melipona scutellaris]
 gi|205318889|gb|ACI02436.1| vasa [Melipona quadrifasciata]
          Length = 624

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 133/364 (36%), Positives = 208/364 (57%), Gaps = 15/364 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F   GL   V+  +  +GY KPTP+Q   +P+++   D+   AQTG+GKTA+F +P++ T
Sbjct: 196 FEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPIINT 255

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +LE+    V       P+ +I+ PTREL  Q+     K+  N  L   +  GG     Q 
Sbjct: 256 LLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQR 315

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---SL 173
            KL  G  +L+ TPGR+LD   +G++  ++++ LV+DEADRMLDMGF+P I+ +    ++
Sbjct: 316 GKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHETM 375

Query: 174 VPF-TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           VP   RQTL+FSAT  DE+  ++  FL N   + V         +E  F       +KK 
Sbjct: 376 VPLGERQTLMFSATFPDEVHHLARRFLNNYLFLAVGIVGGARSDVEQNFCEV--ARNKKK 433

Query: 233 ALLQQLLQSQD---TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            LL+++L+ ++   T+   ++F   KK    +   L +  +   +IHG+  QR R + L+
Sbjct: 434 DLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALA 493

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK G + ++VA+ +AARGLDI +V HV N+D+P   + Y+HRIGRTGR G  G+A +  
Sbjct: 494 DFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRATSFF 553

Query: 350 AKED 353
             E+
Sbjct: 554 DPEE 557


>gi|255323803|ref|ZP_05364929.1| dead/deah box helicase [Corynebacterium tuberculostearicum SK141]
 gi|255298983|gb|EET78274.1| dead/deah box helicase [Corynebacterium tuberculostearicum SK141]
          Length = 441

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 143/390 (36%), Positives = 215/390 (55%), Gaps = 28/390 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG++ ++   +   G  +   IQ  T+P+ L   D+ G A+TG GKT  F +P+L  
Sbjct: 11  FAELGVAAEICDGLATRGITRTFAIQELTLPIALSGQDLIGQARTGMGKTYGFGVPLLDR 70

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +        +   PR L++ PTRELA QV ++ +    +  + +A + GG P+E Q KKL
Sbjct: 71  VFDDADIDELDGTPRALVVVPTRELAQQVTEDLQVAAAHLPVRLASIYGGRPYEEQIKKL 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPFTR 178
            +G DV+I TPGR++D   RG L ++ + ILV+DEAD MLD+GF+P ++ I  +L     
Sbjct: 131 NKGVDVIIGTPGRLIDLHERGNLQLDRVAILVLDEADEMLDLGFLPSVEAILKALDGNAH 190

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF-------VATYAQYSKK 231
           QT+LFSATM   +  ++  F++ P  I        AE+ E  F       V   A    K
Sbjct: 191 QTMLFSATMPGAILTLARRFMEKPIHIR-------AESGEQDFTHSSTRKVTFQAHRMDK 243

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
            A++   LQ     +  IIF   K+    L   L ++GF V A+HG++ Q+SR K L  F
Sbjct: 244 VAVVAHALQGSGRGRT-IIFARTKRAAAQLADDLARRGFHVGAVHGDLGQKSREKSLHAF 302

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++VA+D+AARG+D+ DV HV N+ VP+    ++HRIGRTGRAG  G A T+V  
Sbjct: 303 RTGQVDILVATDIAARGIDVDDVTHVINYQVPDDPMTFVHRIGRTGRAGHTGTAITMVGY 362

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           +++     I   +         DL   NPP
Sbjct: 363 DELGKWQVINDEL---------DLGEPNPP 383


>gi|148229654|ref|NP_001084230.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus laevis]
 gi|8163810|gb|AAF73861.1|AF218580_1 p68 RNA helicase [Xenopus laevis]
          Length = 608

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 142/421 (33%), Positives = 227/421 (53%), Gaps = 15/421 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+ A+    + +PTPIQ +  P+ L   D+ G+A TG+GKT S++LP +
Sbjct: 92  LNFNEASFPANVMEAIKRQNFTEPTPIQGQGWPVALSGLDMVGVAMTGSGKTLSYLLPGI 151

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   L++G      P  L+L PTRELA QV     +YG+   L    + GG P   
Sbjct: 152 VHINHQPFLQRGDG----PILLVLAPTRELAQQVQQVAAEYGRACRLRSTCIYGGAPKGP 207

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +N    LV+DEADRMLDMGF P I+ I   +
Sbjct: 208 QIRDLERGVEICIATPGRLIDFLEAGKTNLNRCTYLVLDEADRMLDMGFEPQIRKIVDQI 267

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +   K 
Sbjct: 268 RPDRQTLMWSATWPKEVRQLAEDFLRDYVHINIGALELSANHNILQIVDVCNDGEKDDKL 327

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+   +L   L + G+    IHG+  Q+ R  +L+ FK
Sbjct: 328 VRLMEEIMSEKENKT-IVFVETKRRCDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFK 386

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 387 HGKSPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSSKTGTAYTFFTPG 446

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           +IK ++ +  ++ +    +N +L  L     +       + R++     K  G+DR  +N
Sbjct: 447 NIKQVNDLISVLREANQAINPNLLQLVEDRGRFRGRGGMNDRRDRFSSGKRGGWDR--EN 504

Query: 413 Y 413
           Y
Sbjct: 505 Y 505


>gi|324507413|gb|ADY43143.1| ATP-dependent RNA helicase DDX17 [Ascaris suum]
          Length = 492

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 146/426 (34%), Positives = 227/426 (53%), Gaps = 33/426 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            +F + G  P+V+  +L + + +PT IQ  + P+     D+  IA+TG+GKT +F+LP +
Sbjct: 59  FEFNESGF-PEVLVNMLYSSFERPTIIQSISWPIASSGRDIVSIAKTGSGKTLAFILPGI 117

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             T  +  R R   P  L+L PTRELA QV +   +Y K   L+V  L GG    +Q + 
Sbjct: 118 IHTTKQPPRGRGEGPSVLVLLPTRELAQQVQEVSREYCKAMGLSVTCLFGGAARGSQARD 177

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG DV I TPGR+LD    G   +     LV+DEADRMLDMGF P I+ I S +   R
Sbjct: 178 LERGVDVAIATPGRLLDFLESGTTNLRRCSYLVLDEADRMLDMGFEPQIRKIVSQIRPDR 237

Query: 179 QTLLFSATMTDELQKVSENF-----LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           QTL+FSAT   E++ ++ +F       N   +E+    +  + +E   V  Y +  +   
Sbjct: 238 QTLMFSATWPKEVRALASDFQSDHAFLNVGSLELAANHNITQVVE--VVEEYQKQGRMMT 295

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  ++   +     ++F   K+   +L  S+ + G+    IHG+ +Q  R  +LS FK 
Sbjct: 296 LLTDIMNQPEC--KTLVFVETKRKADDLTRSMRRDGWPTLCIHGDKNQGERDWVLSEFKS 353

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+D+AARGLD+ D+  V N+D PN +E+Y+HRIGRT R  + G A+T     +
Sbjct: 354 GKTPILLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTARCEKKGTAYTFFTPSN 413

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
                 + K++E        + + + PP E +++A  +  R        STG  R    Y
Sbjct: 414 APKARDLIKVME--------EANQVVPP-ELVELADRSSGR--------STGRSR----Y 452

Query: 414 SSQKSH 419
           S ++S+
Sbjct: 453 SGKRSY 458


>gi|114682557|ref|XP_001166433.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 isoform 4 [Pan
           troglodytes]
          Length = 807

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 138/374 (36%), Positives = 209/374 (55%), Gaps = 12/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 218 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 277

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 278 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 397

Query: 180 TLLFSATMTDE-----------LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
           T+LFSATMTDE           ++ ++   L+NP RI VN+ +  A  +   F+      
Sbjct: 398 TMLFSATMTDERAEETWLCAWQVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNR 457

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
                 +   L ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L
Sbjct: 458 EGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEAL 517

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             FK+  I ++VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +L
Sbjct: 518 RRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSL 577

Query: 349 VAKEDIKHIDAIEK 362
           V +++ K +  I K
Sbjct: 578 VGEDERKMLKEIVK 591


>gi|90414183|ref|ZP_01222164.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90324733|gb|EAS41271.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 462

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 132/374 (35%), Positives = 212/374 (56%), Gaps = 7/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL P+++  +   G+ + T IQ   +P+ +   DV   ++TG+GKT +F+LP +
Sbjct: 16  LHFKDLGLDPRLLKKLTHLGFDRATEIQRTAVPVAIMGKDVLASSKTGSGKTLAFLLPAM 75

Query: 61  TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +G+   R   R LIL PTRELA QV               AL++GG  F  Q K+ 
Sbjct: 76  QRMYRGKPFTRRDQRVLILTPTRELAKQVFAQLRTLNAGTPYDGALIVGGENFNDQVKEF 135

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            +    ++ TPGR  DH       ++ +E+L++DEADRMLD+GF P ++ I  L    R 
Sbjct: 136 RKDPMFVVATPGRFADHLEHRSTSLDGLEMLILDEADRMLDLGFAPQLRRIHELANHRRR 195

Query: 179 QTLLFSATMTDE-LQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           QTL+FSATM +E + +++   L  PKR+ V N+     +  +  ++  +  +  K ALL 
Sbjct: 196 QTLMFSATMDNEDVIEMASEMLNAPKRLSVGNSNEEHTDITQRFYLCDHLDH--KQALLD 253

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L+++D     IIF   + +   L   L ++     A+ GN++Q  R  I+S F+    
Sbjct: 254 KVLETED-YNQVIIFTATRADTDRLTAELNERKLKAVALSGNLNQNQRNSIMSQFERVCH 312

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++V +D+A+RGLDI  V HV NFD+P  AE Y+HR+GRTGRAG  G A +LV  +D K 
Sbjct: 313 KILVTTDVASRGLDIDGVSHVINFDMPKHAEEYVHRVGRTGRAGNKGDAISLVGPKDWKS 372

Query: 357 IDAIEKLIEKKVDW 370
             ++E  +++ + +
Sbjct: 373 FKSVEAYLQQSISF 386


>gi|320653569|gb|EFX21674.1| ATP-dependent RNA helicase DbpA [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 457

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 135/364 (37%), Positives = 213/364 (58%), Gaps = 8/364 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDW 370
           K++W
Sbjct: 363 KLNW 366


>gi|268593262|ref|ZP_06127483.1| ATP-dependent RNA helicase SrmB [Providencia rettgeri DSM 1131]
 gi|291311158|gb|EFE51611.1| ATP-dependent RNA helicase SrmB [Providencia rettgeri DSM 1131]
          Length = 445

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 137/368 (37%), Positives = 211/368 (57%), Gaps = 4/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +L L   ++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP +  
Sbjct: 6   FTELELDESLIDALSDKGYQRPTAIQAAAIPAAMDGRDVLGSAPTGTGKTAAFLLPAIQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR L++ PTRELA QVAD  ++   + +L +A + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRVLVVTPTRELAMQVADQAKELCAHNHLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          +EIL++DEADRMLDMGF   I+ I     + +QT+
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVEILILDEADRMLDMGFANDIETIAGETRWRKQTM 185

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  E ++  +E  L++P  I+ +      + I+  F         K ALL  LL+
Sbjct: 186 LFSATLEGEAIRDFAERLLEDPIEIDADPSRRERKKIQQ-FHYRADTLEHKTALLCHLLK 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD +   I+F  +++ +  L   L + G   C + G + Q  R + +    +G ++++V
Sbjct: 245 -QDEVTKAIVFVRKRERLRELVQWLREAGIEPCYLEGEMPQAKRNEAVRRLVDGQVKVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI +V HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  I
Sbjct: 304 ATDVASRGLDIENVSHVFNFDLPRTADVYLHRIGRTGRAGRKGTAISLVEAHDFPLLGKI 363

Query: 361 EKLIEKKV 368
            + IE+ +
Sbjct: 364 TRYIEEPI 371


>gi|195397525|ref|XP_002057379.1| GJ17053 [Drosophila virilis]
 gi|194147146|gb|EDW62865.1| GJ17053 [Drosophila virilis]
          Length = 1244

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 131/363 (36%), Positives = 209/363 (57%), Gaps = 15/363 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 539 WAQCGVSKKEMDVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRH 598

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G   +     +I+ PTREL  Q+  +  K+ ++  L    + GG     Q 
Sbjct: 599 ILDQPSLEDGDGAI----AIIMAPTRELCMQIGKDIRKFSRSLGLRPVCVYGGTGISEQI 654

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 655 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDN 714

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           V   RQT++FSAT   +++ ++   L+ P  + V   S   + +E   V   +  +K   
Sbjct: 715 VRPDRQTVMFSATFPRQMEALARRILKKPVEVIVGGRSVVCKDVEQNVV-ILSDEAKFFK 773

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL+ L   Q+T  + I+F ++++N   L   L K  +   ++HG IDQ  R   + +FK 
Sbjct: 774 LLELLGVYQET-GSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKS 832

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG  G A+T +  E 
Sbjct: 833 GKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGNKGSAYTFITPEQ 892

Query: 354 IKH 356
            ++
Sbjct: 893 SRY 895


>gi|82778002|ref|YP_404351.1| ATP-dependent RNA helicase SrmB [Shigella dysenteriae Sd197]
 gi|309784609|ref|ZP_07679244.1| ATP-dependent RNA helicase srmB [Shigella dysenteriae 1617]
 gi|81242150|gb|ABB62860.1| ATP-dependent RNA helicase [Shigella dysenteriae Sd197]
 gi|308927506|gb|EFP72978.1| ATP-dependent RNA helicase srmB [Shigella dysenteriae 1617]
          Length = 444

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 137/356 (38%), Positives = 205/356 (57%), Gaps = 4/356 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73
           A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  +L+  R +   P
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +      D+++ T GR+
Sbjct: 78  RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQ 192
           L +          +E L++DEADRMLDMGF   I++I     + +QTLLFSAT+  D +Q
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
             +E  L++P  +  N PS+      H +         K ALL  LL+  +  ++ I+F 
Sbjct: 198 DFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFV 255

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
            +++ V  L + L + G +   + G + Q  R + +    EG + ++VA+D+AARG+DIP
Sbjct: 256 RKRERVHELANWLREAGINNRYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           DV HVFNFD+P   + Y+HRIGRT RAGR G A +LV   D   +  + + IE+ +
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371


>gi|325188274|emb|CCA22814.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 414

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 214/379 (56%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+ KP+ IQ + +  +L  HD    AQ+GTGKTA+F +   +I
Sbjct: 43  FDAMELREDLLRGIYAYGFEKPSAIQQRAVKPILLGHDCIAQAQSGTGKTATFTV---SI 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    ++  + LIL PTRELA Q+       G   ++ V   +GG         L++G
Sbjct: 100 LQKININLKETQALILAPTRELAQQIVKVIAAIGDYMSINVHACVGGTAVRDDIHTLQQG 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ D  N+G L    +++ V+DEAD ML  GF   I ++   +P + Q  L
Sbjct: 160 VHIVVGTPGRVGDMINQGALRTEAVKMFVLDEADEMLSRGFQDQIYDVFRFLPESVQVAL 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
           FSATM  E+ +V++ F+++P RI V     T E I+  FVA   +   +   C L + L 
Sbjct: 220 FSATMPQEVLEVTQKFMRDPIRIMVKRDELTLEGIKQFFVAIEREEWKFDTLCDLYETL- 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   II+CN ++ V  L   ++ + F+V A+HG++DQR R  I+  F+ G+ +++
Sbjct: 279 ----TITQAIIYCNTRRKVDWLTEKMQSKDFTVSAMHGDMDQRQRDIIMREFRSGSSRVL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   + + D++++  
Sbjct: 335 ITTDLLARGIDVQQVSLVVNYDLPLNRENYIHRIGRSGRFGRKGVAINFLTECDVRYLKD 394

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IEK    +++ +  +++ L
Sbjct: 395 IEKFYNTQIEEMPMNVADL 413


>gi|289619969|emb|CBI53413.1| unnamed protein product [Sordaria macrospora]
          Length = 602

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 131/363 (36%), Positives = 201/363 (55%), Gaps = 13/363 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 173 FDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 232

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 233 INAQPLLAPGDG----PIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQI 288

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 289 RDLSRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 348

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL-- 234
            RQTL++SAT   E++ ++ +FL N  ++ + +    A       V   ++  K+  +  
Sbjct: 349 DRQTLMWSATWPKEVRNLASDFLTNFIQVNIGSMDLAANHRITQIVEVVSESEKRDRMIK 408

Query: 235 -LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L+++++ ++     +IF   K+   ++   L + G+   +IHG+  Q  R  +L  FK 
Sbjct: 409 HLEKIMEGRENTNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKT 468

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +MVA+D+A+RG+D+ ++ HV N+D PN +E+YIHRIGRTGRAG  G A T    ++
Sbjct: 469 GKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDN 528

Query: 354 IKH 356
            K 
Sbjct: 529 SKQ 531


>gi|209771328|gb|ACI83976.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|320642613|gb|EFX11861.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H- str.
           493-89]
 gi|320647966|gb|EFX16674.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H- str. H
           2687]
          Length = 457

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 135/364 (37%), Positives = 213/364 (58%), Gaps = 8/364 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDW 370
           K++W
Sbjct: 363 KLNW 366


>gi|332244020|ref|XP_003271168.1| PREDICTED: probable ATP-dependent RNA helicase DDX43 [Nomascus
           leucogenys]
          Length = 649

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 141/363 (38%), Positives = 215/363 (59%), Gaps = 11/363 (3%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE----- 64
           P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT  +++P    L+     
Sbjct: 252 PEVMETIKKAGFPKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLDLQPTL 311

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           KG+ R R P  L+L PTRELA QV     KY     L    + GG   + Q ++L +G D
Sbjct: 312 KGQ-RNR-PGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIEELRKGVD 368

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           ++I TPGR+ D      + + NI  LV+DEAD+MLDMGF P I  I   V   RQT++ S
Sbjct: 369 IIIATPGRLNDLQMNNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTS 428

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           AT    + ++++++L+ P  + V T    A  +++   + T  +  +K + +Q  LQ+  
Sbjct: 429 ATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEE--EKWSHMQTFLQNMS 486

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
           +    I+F ++K  V +L   L     S+ ++HG+ +QR R K L NFK G +++++A+D
Sbjct: 487 STDKVIVFVSRKAVVDHLSSDLILGNISIESLHGDREQRDREKALENFKTGKVRILIATD 546

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           LA+RGLD+ DV HV+NFD P   E Y+HRIGRTGRAGR G + T + + D +    +  +
Sbjct: 547 LASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINI 606

Query: 364 IEK 366
           +E+
Sbjct: 607 LER 609


>gi|15801822|ref|NP_287840.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 EDL933]
 gi|15831181|ref|NP_309954.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           Sakai]
 gi|168749013|ref|ZP_02774035.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756028|ref|ZP_02781035.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4401]
 gi|168769429|ref|ZP_02794436.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775172|ref|ZP_02800179.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4196]
 gi|168782877|ref|ZP_02807884.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4076]
 gi|168788327|ref|ZP_02813334.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC869]
 gi|168799657|ref|ZP_02824664.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC508]
 gi|208811167|ref|ZP_03253000.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815022|ref|ZP_03256201.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820345|ref|ZP_03260665.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4042]
 gi|209399223|ref|YP_002270403.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4115]
 gi|217329397|ref|ZP_03445477.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           TW14588]
 gi|254792938|ref|YP_003077775.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           TW14359]
 gi|261224337|ref|ZP_05938618.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257409|ref|ZP_05949942.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291282438|ref|YP_003499256.1| ATP-independent RNA helicase DbpA [Escherichia coli O55:H7 str.
           CB9615]
 gi|331652393|ref|ZP_08353412.1| ATP-independent RNA helicase DbpA [Escherichia coli M718]
 gi|12515409|gb|AAG56454.1|AE005371_10 ATP-dependent RNA helicase [Escherichia coli O157:H7 str. EDL933]
 gi|13361392|dbj|BAB35350.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. Sakai]
 gi|187769343|gb|EDU33187.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4196]
 gi|188016533|gb|EDU54655.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999660|gb|EDU68646.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356796|gb|EDU75215.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361561|gb|EDU79980.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4486]
 gi|189371812|gb|EDU90228.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC869]
 gi|189377976|gb|EDU96392.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC508]
 gi|208724673|gb|EDZ74381.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731670|gb|EDZ80358.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740468|gb|EDZ88150.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160623|gb|ACI38056.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4115]
 gi|209771330|gb|ACI83977.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209771332|gb|ACI83978.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209771334|gb|ACI83979.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209771336|gb|ACI83980.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|217317836|gb|EEC26264.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           TW14588]
 gi|254592338|gb|ACT71699.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O157:H7 str. TW14359]
 gi|290762311|gb|ADD56272.1| ATP-independent RNA helicase DbpA [Escherichia coli O55:H7 str.
           CB9615]
 gi|320189895|gb|EFW64547.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC1212]
 gi|320659158|gb|EFX26750.1| ATP-dependent RNA helicase DbpA [Escherichia coli O55:H7 str. USDA
           5905]
 gi|326340988|gb|EGD64781.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           1125]
 gi|326343226|gb|EGD66993.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           1044]
 gi|331050671|gb|EGI22729.1| ATP-independent RNA helicase DbpA [Escherichia coli M718]
          Length = 457

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 135/364 (37%), Positives = 213/364 (58%), Gaps = 8/364 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDW 370
           K++W
Sbjct: 363 KLNW 366


>gi|190702284|gb|ACE75181.1| ATP-dependent RNA helicase [Glyptapanteles flavicoxis]
          Length = 796

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 208/379 (54%), Gaps = 41/379 (10%)

Query: 10  PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI------ 62
           PK +  ++D  GY   TPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L        
Sbjct: 376 PKEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLLWITSLPK 435

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E+     + P ++IL PTRELA Q+ +   K+G+   +   +++GG+  E Q  +L  G
Sbjct: 436 IERLEEADQGPYSIILAPTRELAQQIEEETNKFGQPLGIRTVVVVGGLSREEQGFRLRMG 495

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177
            +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P T     
Sbjct: 496 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 555

Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTA 214
                               RQT++F+ATM   +++++  +L+ P  +    V  P+   
Sbjct: 556 NEDAENEEKLLANYNTKKKYRQTVMFTATMPPAVERLARTYLRRPAMVYIGSVGKPTERT 615

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           E I H       +  K+  L++ L +  +     IIF NQKK    L   LEK GF+ C 
Sbjct: 616 EQIVHIM----GEADKRRKLMEILHRGVEP--PVIIFVNQKKGADVLARGLEKIGFNACT 669

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG   Q  R   L++ K G+  ++VA+D+A RG+DI DV  V N+D+    E+Y HRIG
Sbjct: 670 LHGGKGQEQREYALASLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIG 729

Query: 335 RTGRAGRHGKAFTLVAKED 353
           RTGRAG+ G A +   K+D
Sbjct: 730 RTGRAGKAGLAISFCTKDD 748


>gi|237653132|ref|YP_002889446.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
 gi|237624379|gb|ACR01069.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
          Length = 487

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 138/386 (35%), Positives = 213/386 (55%), Gaps = 10/386 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L LSP ++  +    Y   TPIQ  ++PL L  HD+   A+TG+GKTA+F LP+L
Sbjct: 30  LPFDGLPLSPAMLDTLRQLDYRAMTPIQAASLPLALAGHDLIAQAKTGSGKTAAFALPLL 89

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
             L+  +  V+    ++L PTRELA QV     +  +   N+ V  L GG P   Q   L
Sbjct: 90  ARLDVRKLAVQ---AMVLCPTRELADQVTQEIRRLARFEANIKVLALCGGTPMRPQRDSL 146

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA V++ TPGRI+DH  RG L++  +  LV+DEADRMLDMGF   I  + S  P  RQ
Sbjct: 147 EHGAHVVVGTPGRIMDHLERGSLVLEALNTLVLDEADRMLDMGFHDDIAFVASRCPSERQ 206

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  + + +++  FL+ P+ +++    +  +  +  +   +    +  A L +  
Sbjct: 207 TLLFSATYPEGIARLAARFLREPQEVKLLEQHAHGKIRQRFYEVAHPARLEAVATLLRHF 266

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   T+     FCN ++   +L   L  +GF+  A++G ++QR R ++L  F   +  ++
Sbjct: 267 RPVSTLA----FCNTRQQCRDLVELLRARGFAALALNGEMEQRERDQVLIQFANRSCSVL 322

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N DV    E +IHRIGRTGR    G A  L +  D + + +
Sbjct: 323 VATDVAARGLDIARLEAVINVDVTPDPEIHIHRIGRTGRGDEEGWALNLCSSADKRRVAS 382

Query: 360 IEKLIEKKVDW--LNGDLSSLNPPLE 383
           I + +  + +W  L+  +   N PL+
Sbjct: 383 IAQRMGFEPEWHALDELVEDANEPLQ 408


>gi|198453003|ref|XP_002137583.1| GA27302 [Drosophila pseudoobscura pseudoobscura]
 gi|198132172|gb|EDY68141.1| GA27302 [Drosophila pseudoobscura pseudoobscura]
          Length = 800

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 153/390 (39%), Positives = 221/390 (56%), Gaps = 29/390 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ L+  +   V  A Y KPTP+Q   IP+++   D+   AQTG+GKTA+F++P+L  
Sbjct: 293 FDDVQLTEIIRNNVSLARYDKPTPVQKHAIPIIISGRDLMACAQTGSGKTAAFLVPILNQ 352

Query: 62  ILEKGRA-----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           + E G +           R + P  L+L PTRELA Q+ +  +K+     +  A+L GG 
Sbjct: 353 MYEHGMSAPPQNNRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGN 412

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L+RG  +++ TPGR+ D   RGK+ + NI  LV+DEADRMLDMGF P I+ I
Sbjct: 413 NTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRI 472

Query: 171 TSLV--PFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
              +  P T  RQTL+FSAT   ++Q+++ +FL N   + V    ST+E I    +  Y 
Sbjct: 473 VEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYE 532

Query: 227 QYSKKCALLQQLLQ-------SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
           Q  K+  LL  L         S+D++   +IF   KK   +L   L +    V +IHG+ 
Sbjct: 533 Q-DKRSYLLDLLSSIRDGPEYSKDSLT--LIFVETKKGADSLEEFLYQCSHPVTSIHGDR 589

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q+ R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P+  E Y+HRIGRTGR 
Sbjct: 590 TQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRM 649

Query: 340 GRHGKAFTLVAKEDIKHI--DAIEKLIEKK 367
           G  G A +    E  ++I  D +E LIE K
Sbjct: 650 GNLGVATSFF-NEKNRNICSDLLELLIETK 678


>gi|13384106|gb|AAK21271.1| RNA helicase-like protein [Homo sapiens]
          Length = 561

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 133/344 (38%), Positives = 199/344 (57%), Gaps = 1/344 (0%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L  L     +  + R L+L 
Sbjct: 2   GFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLV 61

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF-N 138
           PTREL  QV     +  +  N+T  L +GG+  ++Q   L    D+LI TPGR++DH  N
Sbjct: 62  PTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHN 121

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
                +++IE+L++DEADRMLD  F   ++ I  +    RQT+LFSATMTDE++ ++   
Sbjct: 122 CPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVS 181

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           L+NP RI VN+ +  A  +   F+            +   L ++    + ++F   KK  
Sbjct: 182 LKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQA 241

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +   L   G  V  +HGN+ Q  R++ L  FK+  I ++VA+D+AARGLDI  V  V 
Sbjct: 242 HRMHIFLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVI 301

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  I K
Sbjct: 302 NFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVK 345


>gi|332289731|ref|YP_004420583.1| ATP-dependent RNA helicase SrmB [Gallibacterium anatis UMN179]
 gi|330432627|gb|AEC17686.1| ATP-dependent RNA helicase SrmB [Gallibacterium anatis UMN179]
          Length = 447

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 133/358 (37%), Positives = 207/358 (57%), Gaps = 12/358 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L P+++ A+   G  +PT IQI+ IP  +  HDV G + TGTGKT +F+LP + 
Sbjct: 5   NFDEFDLDPQLLKALAKKGLNRPTAIQIEAIPAAMDGHDVLGSSPTGTGKTIAFLLPAIQ 64

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR L+L PTRELA QVA+  ++  +  +L++A + GG+ ++   +   
Sbjct: 65  HLLDFPRRKPGAPRVLVLTPTRELAMQVAEQAQQLAQFTSLSIATITGGVAYQNHGEIFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D++I TPGR+L +          +EIL+ DEADRML MGF    + I +   + +QT
Sbjct: 125 KNQDMVIATPGRLLQYIQEENFDCRAVEILIFDEADRMLQMGFGQDAERIAAETRWRKQT 184

Query: 181 LLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAE--TIEHCFVATYAQYSK--KCALL 235
           +LFSAT+  +EL   ++  L NP  +EVN   S  E   I+  +   Y   SK  K  LL
Sbjct: 185 MLFSATLEGEELNSFAQRLLDNP--VEVNAEPSRRERKKIQQWY---YHADSKEHKIKLL 239

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +++  +   K GI+F   ++ V  L   L K+G     + G + Q  R   +   ++G 
Sbjct: 240 ARVIVDEKVSK-GIVFVRHREEVRELAEILRKRGIRSTYLEGEMAQTQRNNAIEKLRDGV 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           + ++VA+++AARG+DI D+ HVFNFD+P  A+ Y+HRIGRT RAG+ G A + V   D
Sbjct: 299 VTILVATNVAARGIDIDDISHVFNFDLPYNADVYLHRIGRTARAGKKGCAISFVEAHD 356


>gi|320009565|gb|ADW04415.1| DEAD/DEAH box helicase domain protein [Streptomyces flavogriseus
           ATCC 33331]
          Length = 726

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 130/347 (37%), Positives = 188/347 (54%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L  
Sbjct: 49  FADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLAA 108

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G    + PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LERG
Sbjct: 109 LAGGHTEKKKPRAIILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERG 168

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVL+ TPGR+ D  NRG   + N+++ V+DEAD+M D+GF+P +  +   +P   Q +L
Sbjct: 169 VDVLVATPGRLRDIINRGACSLENVQVAVLDEADQMSDLGFLPEVTELLDQIPGGGQRML 228

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E+  + + +L NP   EV++      T+ H  +    +   K  +   +   +
Sbjct: 229 FSATMENEIGTLVKRYLSNPVTHEVDSAQGNVSTMSHHVLVVKPK--DKAPVTAAIAARK 286

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L + G    A+HG + Q +R ++L +FK+G +  +VA+
Sbjct: 287 GRT---IIFVRTQLGADRIAEQLIESGVKADALHGGMTQGARTRVLEDFKKGYVNALVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L 
Sbjct: 344 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGVVVSLA 390


>gi|223999113|ref|XP_002289229.1| atp-depedent helicase [Thalassiosira pseudonana CCMP1335]
 gi|220974437|gb|EED92766.1| atp-depedent helicase [Thalassiosira pseudonana CCMP1335]
          Length = 435

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 137/371 (36%), Positives = 211/371 (56%), Gaps = 11/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+ L L P ++ ++    +  PT IQ  +IP  L+  DV G+A+TG+GKT SF +P+L  
Sbjct: 41  FSSLNLHPSLLSSIASLQWTNPTQIQAASIPPALEGRDVIGLAETGSGKTGSFAIPILNY 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEK + +V     +IL PTRELA Q+ +     G+        ++GG+   +Q   L R
Sbjct: 101 LLEKPQKQVF---AVILAPTRELAFQIHEVMVALGRGMGANSVCVVGGVDMASQAIALAR 157

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--- 177
              V++ TPGR+LDH    K   +  I+ LV+DEADRML M F   I  I  ++P     
Sbjct: 158 NPHVVVATPGRLLDHLQNTKGFHLRQIKYLVMDEADRMLSMDFEKEINEILEVIPDCEKG 217

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R+T+LFSATMT +++K+    L +P R+EV+T   T + +   ++   A+Y K C L   
Sbjct: 218 RRTMLFSATMTSKVEKLQRASLVDPVRVEVSTKFQTPKKLLQNYLFIPAKY-KDCYL--T 274

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L ++   ++ ++F     NV  L   L   GF    +HG + Q  R+  L+ FK G   
Sbjct: 275 YLINEHAGQSILVFGATCNNVQRLALMLRNLGFPAICLHGQMSQPKRLGALTKFKSGGRD 334

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ +D+A+RGLDIP V  V NFD+P   ++YIHR+GRT RAGR GKA  +V + D++  
Sbjct: 335 ILICTDVASRGLDIPSVDVVINFDLPGHGKDYIHRVGRTARAGRSGKAIAMVTQYDVEVY 394

Query: 358 DAIEKLIEKKV 368
             +E L+  ++
Sbjct: 395 QRLEHLLGHRL 405


>gi|289209627|ref|YP_003461693.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix]
 gi|288945258|gb|ADC72957.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix]
          Length = 440

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 138/382 (36%), Positives = 213/382 (55%), Gaps = 9/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  L L   V   +   G+   TPIQ  T+P+ L   DV G AQTGTGKTA+F++     
Sbjct: 11  FDQLDLPEAVQAGIRATGFETCTPIQALTLPIALAGRDVAGQAQTGTGKTAAFLIATFNR 70

Query: 62  ILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L +  A   R    R LI+ PTRELA Q+  + E  G+   L +AL  GG  +++Q ++
Sbjct: 71  LLRQAPAPDRRATDVRALIVAPTRELAIQIHKDAEMLGRETGLKLALAYGGTGYDSQREQ 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS-LVPFT 177
           LE GAD+LI TPGRI+D+F +    + + E++V+DEADRM D+GFI  ++ +     P +
Sbjct: 131 LEAGADILIGTPGRIIDYFKQKVFGLGHTEVVVLDEADRMFDLGFIKDVRFLMRRCAPAS 190

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R ++LFSAT++  + +++   + NP++++V   + TA+ +    V  Y    +K  LL 
Sbjct: 191 ERLSMLFSATLSLRVMELAYEHMSNPEKVQVEAETLTADRVRQ--VIYYPANEEKIPLLL 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L +     +  I+F N K     +C  L   G     + G++ Q  R  +L  F  G  
Sbjct: 249 GLARDLKP-ERAIVFVNTKHGAEKVCDWLNVNGQKAALLSGDVPQNKRSSLLERFTAGEY 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             +VA+D+AARGL IP V HVFNFD+P   E+Y+HRIGRT RAG  G A +   ++   +
Sbjct: 308 AFLVATDVAARGLHIPAVTHVFNFDLPQSGEDYVHRIGRTARAGAEGDAISFGCEDSAFY 367

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
           +  IE  + +++     D ++L
Sbjct: 368 LPDIESYLGERIPTETVDPAAL 389


>gi|54302661|ref|YP_132654.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46916085|emb|CAG22854.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
          Length = 474

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 132/373 (35%), Positives = 208/373 (55%), Gaps = 5/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL P+++  +   G+ + T IQ   +P+ +   DV   ++TG+GKT +F+LP +
Sbjct: 28  LHFKDLGLDPRLLKKLTHLGFERATEIQRTAVPVAIMGKDVLASSKTGSGKTLAFLLPAM 87

Query: 61  TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +G+   R   R LIL PTRELA QV               AL++GG  F  Q K+ 
Sbjct: 88  QRMYRGKPFTRRDQRVLILTPTRELAKQVFAQLRTLNAGTPYDGALIVGGENFNDQVKEF 147

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            +    ++ TPGR  DH       ++ +E+L++DEADRMLD+GF P ++ I  L    R 
Sbjct: 148 RKDPMFVVATPGRFADHLEHRSTSLDGLEMLILDEADRMLDLGFAPQLRRIHELANHRRR 207

Query: 179 QTLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSATM +E + +++   L  PKR+ + + +     I   F         K ALL +
Sbjct: 208 QTLMFSATMDNEDVIEMASEMLNAPKRLSIGSSNEEHTDITQRFYLC-DHLDHKQALLDK 266

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+++D     IIF   + +   L   L ++     A+ GN++Q  R  I+S F+    +
Sbjct: 267 VLETED-YNQVIIFTATRADTDRLTAELNERKLKAVALSGNLNQNQRNSIMSQFERVCHK 325

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLDI  V HV NFD+P  AE Y+HR+GRTGRAG  G A +LV  +D K  
Sbjct: 326 ILVTTDVASRGLDIEGVSHVINFDMPKHAEEYVHRVGRTGRAGNKGDAISLVGPKDWKSF 385

Query: 358 DAIEKLIEKKVDW 370
            ++E  +++ + +
Sbjct: 386 KSVEAYLQQSISF 398


>gi|46108284|ref|XP_381200.1| hypothetical protein FG01024.1 [Gibberella zeae PH-1]
 gi|91207410|sp|Q4IP34|PRP5_GIBZE RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
          Length = 1227

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 138/372 (37%), Positives = 216/372 (58%), Gaps = 10/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A  GL+ + +  V + GY KPTPIQ++ +P ++   DV G+A+TG+GKT +F+LPM   
Sbjct: 599 WAQCGLTRQTLDVVDNLGYEKPTPIQMQALPALMSGRDVIGVAKTGSGKTVAFLLPMFRH 658

Query: 63  LEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + K +  ++    P  LI+ PTRELA Q+  + + + K   L      GG P   Q  +L
Sbjct: 659 I-KDQPPLKDTDGPIGLIMTPTRELAVQIHKDCKPFLKMMGLRAVCAYGGAPIREQIAEL 717

Query: 120 ERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D    N+G++  +  +  +V+DEADRM DMGF P +  I + +  
Sbjct: 718 KRGAEIIVCTPGRMIDLLAANQGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIFANMRP 777

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSATM   +  +++  L+NP  + V   S  A+ IE   V    + SK   +L+
Sbjct: 778 DRQTILFSATMPRIIDSLTKKVLKNPIEVTVGGRSVVAKEIEQ-IVEVRDEPSKFHRVLE 836

Query: 237 QL--LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            L  L  +D     +IF  +++   +L   L  +G+   +IHG  DQ  R   +S+FK+G
Sbjct: 837 LLGELYDRDEDARTLIFVERQEKADDLLKELMMKGYPCMSIHGGKDQIDRDSTISDFKKG 896

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T V  E  
Sbjct: 897 VVPILIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGVAVTFVTPEQE 956

Query: 355 KHIDAIEKLIEK 366
                I K +E+
Sbjct: 957 NCAPGIAKALEQ 968


>gi|115398049|ref|XP_001214616.1| ATP-dependent RNA helicase ded1 [Aspergillus terreus NIH2624]
 gi|121737954|sp|Q0CLJ6|DED1_ASPTN RecName: Full=ATP-dependent RNA helicase ded1
 gi|114192807|gb|EAU34507.1| ATP-dependent RNA helicase ded1 [Aspergillus terreus NIH2624]
          Length = 674

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 205/363 (56%), Gaps = 22/363 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  A Y+ PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 188 FTNPPLDDHLISNIALARYLTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 247

Query: 63  ----------------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                           L  GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 248 AFQNGPSPTPAPAGGQLGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVV 307

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ L++DEADRMLDMGF P 
Sbjct: 308 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQ 367

Query: 167 IQNITSL--VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I     +P    RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 368 IRRIVEGEDMPHVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQK-- 425

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             Y +   K ++L  +L +  T    +IF   K+   +L   L  Q F   AIHG+  QR
Sbjct: 426 VEYVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQR 485

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AA GLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 486 ERERALEMFRSGRCPILVATAVAASGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 545

Query: 343 GKA 345
           G A
Sbjct: 546 GIA 548


>gi|167748599|ref|ZP_02420726.1| hypothetical protein ANACAC_03372 [Anaerostipes caccae DSM 14662]
 gi|167651913|gb|EDR96042.1| hypothetical protein ANACAC_03372 [Anaerostipes caccae DSM 14662]
          Length = 478

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 131/381 (34%), Positives = 217/381 (56%), Gaps = 13/381 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D GLS +++ A+   GY KPT IQ + IP +L   ++   A TG+GKTA+F +P   
Sbjct: 4   EFQDFGLSIEILEALNGLGYKKPTNIQQEVIPPMLAGKNIVAKAPTGSGKTAAFAIP--- 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I +  R     P+ L+LEP RELA QV+      G+   L V  + GG P + Q + L++
Sbjct: 61  ICQNVRWEENAPQALVLEPARELAVQVSQEMFHIGRKKRLKVPAVFGGFPIDKQIRTLKQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + ++  TPGR++DH  R  L ++N++ LVIDEAD MLDMGFI  ++ I SLVP   +  
Sbjct: 121 KSHIVAGTPGRVMDHIRRETLKLSNVQWLVIDEADLMLDMGFIDEMKQILSLVPADCRIS 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  E++++++ F+  P+ + V   +   +         +A   +K      +L  
Sbjct: 181 LFSATLKPEIRELADEFI--PEAVLVMQEAGEEQAPAITEKLYFASQERKYDTFLDILMD 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++  ++ +IFC  ++    L   L ++      +HG+++Q+ R+K ++ F+ G  + ++A
Sbjct: 239 ENP-QSCMIFCGTREMTNVLFQKLRRKRIFCGMLHGDMEQKERLKTVNAFRRGGFRFLIA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D  ++ HV N+D P   E Y+HRIGRTGR G  G A +LV ++D + +  +E
Sbjct: 298 TDVAARGIDFEEISHVVNYDFPTGKETYVHRIGRTGRNGNSGTAVSLVTEDDQRMLKQVE 357

Query: 362 KLIEKKVDWLNGDLSSLNPPL 382
                   +L  +L    PP+
Sbjct: 358 T-------YLGRELPVTEPPV 371


>gi|156052799|ref|XP_001592326.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|160358660|sp|A7EML8|RRP3_SCLS1 RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|154704345|gb|EDO04084.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 482

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 134/368 (36%), Positives = 216/368 (58%), Gaps = 10/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DLG+   +  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L +
Sbjct: 58  FKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQS 117

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+K +        L+L PTRELA Q++ +FE  G    +  A+++GG+    Q   L +
Sbjct: 118 LLDKPQPLF----GLVLAPTRELAYQISQSFEALGSIIRVKCAVIVGGMDMVPQAIALGK 173

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+LDH    K   + +++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 174 KPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERRT 233

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LFSAT++ +++ +    L++P R+ +++    T  T+   ++  +     K   L  LL
Sbjct: 234 YLFSATISSKVESLQRASLKDPLRVSISSNKYQTVSTLIQNYI--FIPLVHKDTYLIYLL 291

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   ++ IIF         +   L   GF    +HG + Q SR+  L+ F+ G+ +++
Sbjct: 292 -NEFAGQSAIIFTRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGSREIL 350

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V N+D+P  ++ YIHR+GRT RAG+ G A + V + D++    
Sbjct: 351 VATDVAARGLDIPSVDVVLNYDMPQDSKTYIHRVGRTARAGKSGHAISFVTQYDVEIWMR 410

Query: 360 IEKLIEKK 367
           IE  + KK
Sbjct: 411 IEAALGKK 418


>gi|242042443|ref|XP_002468616.1| hypothetical protein SORBIDRAFT_01g049070 [Sorghum bicolor]
 gi|241922470|gb|EER95614.1| hypothetical protein SORBIDRAFT_01g049070 [Sorghum bicolor]
          Length = 454

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 135/368 (36%), Positives = 212/368 (57%), Gaps = 4/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+  ++V A    G+ +PT IQ + IP  LQ  D+  +AQTG+GKT +F LP+L  
Sbjct: 26  FAELGICAELVEACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTGAFALPILQE 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   R   +     +L PTRELA Q+A+ FE  G    L  ++L+GG+    Q   + + 
Sbjct: 86  LLSNRQAEQSFFACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSIGKR 145

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++ TPGR+LDH    K   +  I+ LV+DEAD++L++ F   + +I   +P  R+T 
Sbjct: 146 PHIVVGTPGRLLDHLTETKGFSLKKIKYLVLDEADKLLNVEFEKSLDDILREIPKDRRTF 205

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT ++ K+    L+NP ++E  +  ST ++++  F    A   K C LL  L + 
Sbjct: 206 LFSATMTKKVNKLQRACLRNPAKVEAASKYSTVDSLKQEFYFVPAD-DKDCYLLHVLNER 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           QD+M   +IF    ++   L   L   G    +I G + Q  R+  L+ FK     +++ 
Sbjct: 265 QDSMI--MIFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKAKDCNILIC 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V  V N+D+P  +++Y+HR+GRT RAGR G A +LV + + +    IE
Sbjct: 323 TDVASRGLDIQGVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVNQYEAQWFVLIE 382

Query: 362 KLIEKKVD 369
           KL+ K++D
Sbjct: 383 KLLGKQID 390


>gi|332162007|ref|YP_004298584.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666237|gb|ADZ42881.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 460

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 216/369 (58%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L  
Sbjct: 6   FSSLTLPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLDK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           +  G     + + L+L PTRELA QV+    +  +   N+ +  L GG P   Q   L  
Sbjct: 66  IAVGEF---VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI +H  +  L++++++ILV+DEADRMLDMGF   I ++ +  P  RQTL
Sbjct: 123 APHIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S    + P  +EV+     A  IE  F  T  +  K+  LL  +L S
Sbjct: 183 LFSATYPAGIEQISARVQRQPVNVEVDD-GDEAPAIEQVFFETTRE--KRLPLLISVL-S 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + ++FCN KK+  ++  +LE +G SV A+HG+++QR R ++L  F   + +++VA
Sbjct: 239 HYQPASCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V NF++    E ++HRIGRTGRAG  G A +L   +++    AIE
Sbjct: 299 TDVAARGLDIKDLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHAIE 358

Query: 362 KLIEKKVDW 370
             ++ K+ W
Sbjct: 359 DYLQMKLKW 367


>gi|324502652|gb|ADY41165.1| ATP-dependent RNA helicase an3 [Ascaris suum]
          Length = 656

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 151/393 (38%), Positives = 219/393 (55%), Gaps = 25/393 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F DL L P V   +  +GY KPTP+Q  +IP ++QR DV   AQTG+GKTA+F++P++  
Sbjct: 108 FDDLALHPWVQENIRKSGYSKPTPVQKYSIPTLMQRRDVMSCAQTGSGKTAAFLIPLINQ 167

Query: 62  ILEKGRARVRMPR------------TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
           IL  G   +R P+             LIL PTRELA Q      K+G   N+T A+L GG
Sbjct: 168 ILRNGPDAIRPPQLMNNGRRAMFPVALILAPTRELAMQTHKEALKFGYRTNITSAILYGG 227

Query: 110 IP-FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
              +  Q  KL  G  +LI TPGR+LD   +G +L+     LV+DEADRMLDMGF P I+
Sbjct: 228 RENYRDQINKLRIGCHILIATPGRLLDVVRQGYVLLQECTFLVLDEADRMLDMGFEPQIR 287

Query: 169 NITSL--VP--FTRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVA 223
            I     +P    R T +FSAT   E+Q ++++FL  N   + V    ST+E I    + 
Sbjct: 288 QIVEQNGMPQKGMRVTAMFSATFPKEIQVLAQDFLLPNYVFLAVGRVGSTSENIIQKVL- 346

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + +  +K   L +LL +       ++F   K+   +L   L++  ++V  IHG++ Q  
Sbjct: 347 -WVEEHEKKNFLMELLDADANKGLTLVFVETKRGANDLAWFLQRNNYNVVPIHGDLKQFE 405

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDIP+V HV NFD+P+  + Y+HRIGRTGR G  G
Sbjct: 406 RERHLEMFRTGEANVLVATAVAARGLDIPNVKHVINFDLPSDIDEYVHRIGRTGRVGNVG 465

Query: 344 KAFTLVAKEDIK-HIDAIEKLIEKK---VDWLN 372
           +A +    ++     D  E L+E      +WL+
Sbjct: 466 QATSFFNDKNRNLGRDLAELLVESNQEMPEWLD 498


>gi|312370859|gb|EFR19169.1| hypothetical protein AND_22947 [Anopheles darlingi]
          Length = 490

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 133/364 (36%), Positives = 212/364 (58%), Gaps = 7/364 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LGL   +  A     +  P+ IQ + IPL L   D+ G+A+TG+GKTA+F LP+L  L  
Sbjct: 53  LGLVDTLCQACRALKWKVPSKIQREAIPLALNGKDIIGLAETGSGKTAAFALPILQALLD 112

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
              R      ++L PTRELA Q+++ FE  G    +   +++GG+   AQ  +L R   +
Sbjct: 113 NPQRYF---AVVLTPTRELAYQISEQFEALGTMIGVKCCVVVGGMDLVAQALQLARKPHI 169

Query: 126 LICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T LFS
Sbjct: 170 IIATPGRLVDHLENTKGFGLKALKYLVMDEADRILNMDFEVEVNKILRVIPRERRTFLFS 229

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           ATMT +++K+    L++P ++EV++   T + +   ++   A+Y  K   L  +L ++  
Sbjct: 230 ATMTKKVKKLERASLRDPVKVEVSSKYQTVDKLLQYYIFIPAKY--KDVYLVHIL-NELA 286

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK  T Q+++++D+
Sbjct: 287 GNSFMIFCSTCNNTVRTALMLRALGLAAVPLHGQMTQNKRLAALNKFKSQTRQILISTDV 346

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           A+RGLDIP V  V N D+P  +++YIHR+GRT RAGR G+A T V + D++    IE L+
Sbjct: 347 ASRGLDIPHVDVVLNLDIPMHSKDYIHRVGRTARAGRAGQAITFVTQYDVELYQRIEHLL 406

Query: 365 EKKV 368
            KK+
Sbjct: 407 SKKL 410


>gi|264677044|ref|YP_003276950.1| hypothetical protein CtCNB1_0908 [Comamonas testosteroni CNB-2]
 gi|262207556|gb|ACY31654.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 690

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 145/411 (35%), Positives = 225/411 (54%), Gaps = 56/411 (13%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGI------AQTGTGKTASF 55
           F +LGL+P+++ AV D GY +PT +Q++ IPL + +  D  G       +QTG+GKTA+F
Sbjct: 43  FVELGLAPELIQAVTDLGYTQPTAVQLQAIPLAMGEGADADGFIDLMVSSQTGSGKTAAF 102

Query: 56  VLPMLTILEKGRA---------------------------------------RVRMPRTL 76
           +LP+L  L K RA                                       +  +P  L
Sbjct: 103 LLPVLHTLIKQRAVADAAAKAEFERLCAEAAAKGEPAPKRNKRKDPTNARNFKAAVPGAL 162

Query: 77  ILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           +L PTRELA QVA D  E       + +A ++GGIP++ Q  KL+  AD+++ TPGR+LD
Sbjct: 163 VLCPTRELAQQVAHDAIELVKHCRGIRIANVVGGIPYQLQIAKLQ-NADLVVATPGRLLD 221

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
                ++ ++ ++ LV+DEADRMLD+GF   +  +  L    +QT++FSAT    +Q+++
Sbjct: 222 LQRSMQIKLDKVQFLVVDEADRMLDLGFSDDLAEVNQLTAERKQTMMFSATFAPRIQQLA 281

Query: 196 ENFLQ----NPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQSQDTMKNGII 250
              +     N K+I + TP      I+   F A   Q+ +K  LL   L+   ++   I+
Sbjct: 282 MRVMHDGGANVKKITIATPQEKHANIKQALFWADNMQHKRK--LLDHWLRD-SSINQAIV 338

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F + +     L + L++ GFS  A+HG + Q  R + L   + G +Q++VA+D+AARG+D
Sbjct: 339 FASTQVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGID 398

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +P + HVFN+ +P +AE+Y HRIGRTGRAGR G A T     D + +  IE
Sbjct: 399 VPTITHVFNYGLPMKAEDYTHRIGRTGRAGREGVAVTFAEFRDRRRVFDIE 449


>gi|260912843|ref|ZP_05919329.1| ATP-dependent RNA helicase RhlB [Pasteurella dagmatis ATCC 43325]
 gi|260633221|gb|EEX51386.1| ATP-dependent RNA helicase RhlB [Pasteurella dagmatis ATCC 43325]
          Length = 449

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 147/415 (35%), Positives = 231/415 (55%), Gaps = 15/415 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+ KV+ A+   G+   TPIQ  ++P+ L   D+ G AQTGTGKT +F+    
Sbjct: 34  LRFSDLPLNSKVLSALERKGFEYCTPIQALSLPISLAGKDIAGQAQTGTGKTMAFLTATF 93

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
              +  +       PR LIL PTRELA Q+ ++ E   K  NL   L  GG  +E Q K 
Sbjct: 94  HHLLTHQSEKNTSQPRALILAPTRELAVQINNDAELLSKATNLKTGLAYGGDGYEKQLKT 153

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-- 176
           +E+G D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P   
Sbjct: 154 IEKGVDILIGTTGRVIDYVKQGIICLDQIQVVVLDEADRMFDLGFIKDIRYLLRKCPAPE 213

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
            R T+LFSAT++ ++++++   + +P+ +E+     T   I E  F   Y     K ALL
Sbjct: 214 ARLTMLFSATLSYKVRELAFEDMNDPEYVEIEPLQKTGHRIKEELF---YPSNQDKMALL 270

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL+ +   +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G 
Sbjct: 271 LTLLEEE-WPERCIVFANTKHRCEEIWGYLSADGHRVGLLTGDVAQKKRLSLLKQFTDGD 329

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   
Sbjct: 330 LDILVATDVAARGLHISDVTHVFNYDLPDDCEDYVHRIGRTGRAGESGVSISFACEEYAM 389

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL--NPPLEKIDIAQH----NHARKNNPIPQKST 404
           ++ AIE  I   +     D  +L   P   ++  A H    NH++ +     K +
Sbjct: 390 NLPAIENYIAHSIPVSQYDAKALLELPKPHRLKRATHTAMRNHSKNDRTFANKRS 444


>gi|121700981|ref|XP_001268755.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus clavatus
           NRRL 1]
 gi|142982514|sp|A1CNV8|DRS1_ASPCL RecName: Full=ATP-dependent RNA helicase drs1
 gi|119396898|gb|EAW07329.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus clavatus
           NRRL 1]
          Length = 826

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 139/359 (38%), Positives = 201/359 (55%), Gaps = 3/359 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS  ++  +    +  PTPIQ KTIP+ L   D+ G A TG+GKTA+FV+P+L  
Sbjct: 308 FQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILER 367

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q  +   K   + ++T   L+GG     Q   L++ 
Sbjct: 368 LLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATHTDVTFCQLVGGFSLREQENILKKR 427

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 428 PDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTM 487

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMTD + K+    L  P R+ V++  +T+  +   FV     +  K+   L  L  
Sbjct: 488 LFSATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLTQEFVRLRPGREGKRLGYLLYLCS 547

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  I+F  QKK    +       G     +HG++ Q  R+K + +F+EG +  ++
Sbjct: 548 EIFTGRV-IVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFREGKVAFLL 606

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A  D K + A
Sbjct: 607 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAADPDRKVVKA 665


>gi|326505994|dbj|BAJ91236.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 685

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 149/395 (37%), Positives = 216/395 (54%), Gaps = 20/395 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ L+  +   +    Y  PTP+Q   IP+++ R DV   AQTG+GKTA+F++P+L  
Sbjct: 202 FDDIKLTDIIRMNIALTRYDTPTPVQKYAIPIIIGRRDVMACAQTGSGKTAAFLVPILNQ 261

Query: 62  ILEKGRA----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
           I EKG A          R + P  LIL PTRELA Q+ D  +K+     +   ++ GG  
Sbjct: 262 IYEKGPAAYNVGPKLQSRRKYPLGLILAPTRELATQIYDEAKKFAYRSRVRPCVVYGGSH 321

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q + LE+G  +L+ TPGR++D   RGK+ ++    LV+DEADRMLDMGF   I+ I 
Sbjct: 322 VMDQIRDLEQGCHLLVATPGRLVDMLERGKIGLDFCRYLVLDEADRMLDMGFETQIRRIV 381

Query: 172 SL----VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
                  P  RQTL+FSAT   E+Q ++ +FL N   + +    ST+E I    V    +
Sbjct: 382 EKDSMPPPGDRQTLMFSATFPKEIQMLARDFLDNYIFLAIGRVGSTSENITQKIVWVEDR 441

Query: 228 YSKKCALLQQL----LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            +K+  LL  L    ++SQ      ++F   KK   +L   L   G+ V +IHG+  QR 
Sbjct: 442 -NKRSYLLDLLNATPIRSQPAESLILVFVETKKGADSLEEFLYSNGYPVTSIHGDRTQRE 500

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L +F+ G   ++VA+ +AARGLDIP V HV N+D+P+  E Y+HRIGRTGR G  G
Sbjct: 501 REDALKSFRSGNTPVLVATAVAARGLDIPHVTHVINYDLPSDVEEYVHRIGRTGRMGNLG 560

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            A +    ++      + +LI +    L G L S+
Sbjct: 561 LATSFFNDKNRNLTRDLMELITESKQELPGWLESM 595


>gi|262340963|ref|YP_003283818.1| ATP-dependent RNA helicase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272300|gb|ACY40208.1| ATP-dependent RNA helicase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 551

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 130/370 (35%), Positives = 216/370 (58%), Gaps = 8/370 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60
           F +     K +   L+A G+  PT IQ K IP +L    DV  +AQTGTGKTA+F LP  
Sbjct: 5   FKEYNFFNKNILKALEAIGFQYPTTIQEKVIPFLLSSERDVIALAQTGTGKTAAFGLP-- 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
            I++K    + +P+  IL PTREL  Q+  +F ++ K  + + +  L GG+  ++Q K L
Sbjct: 63  -IIQKVNFDLSIPQAFILCPTRELCVQITRDFYRFSKFLSTIKIISLYGGVSIDSQIKSL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    ++I TPGRI+D   R KL +  I+ L++DEAD ML+MGF   +  I  ++P  RQ
Sbjct: 122 QNKTHIIIGTPGRIIDLIKRKKLHLEKIKYLILDEADEMLNMGFKEELDYIVKMLPKNRQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSATM+  +  ++  +L +P  I     +  ++ ++H +       +KK + L++++
Sbjct: 182 SLLFSATMSKYMNAIARTYLTDPVEIIAGQKNIVSDGVKHIYYMV-GHLNKKYSALKRIV 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +  GIIFC  KK    +   L K G++  A++G++ Q  R  +++ F+   +Q +
Sbjct: 241 DINPGIY-GIIFCETKKETKEIAEYLIKDGYNADALYGDLSQTQRESVMNRFRNKNLQFL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ ++ HV N+++P  ++ YIHR GRTGRAG  G +  ++  ++ +++  
Sbjct: 300 VATDVAARGLDVHNITHVINYNLPKESDIYIHRSGRTGRAGNSGISVCIIHSKETRNLKE 359

Query: 360 IEKLIEKKVD 369
            EK I K  +
Sbjct: 360 FEKRIGKSFE 369


>gi|328771766|gb|EGF81805.1| hypothetical protein BATDEDRAFT_16042 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 584

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 140/412 (33%), Positives = 216/412 (52%), Gaps = 37/412 (8%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           LS  ++ A+   GY +PTPIQ + IP+ LQ  D+ GIA+TG+GKTASFV+PML  + +  
Sbjct: 168 LSETILGAISRIGYKEPTPIQRQAIPMGLQNRDIIGIAETGSGKTASFVIPMLKFITEMP 227

Query: 68  ARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               +     P  LIL PTRELA Q+     K+ +        ++GG   E Q   L  G
Sbjct: 228 PLTEINSSQGPYALILAPTRELAQQIESETSKFAREMGFICVSIVGGHAVEGQAFNLRNG 287

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177
           A ++I TPGR+ D   +  L+++    +V+DEADRM+DMGF P ++ I   +P +     
Sbjct: 288 AHIVIATPGRLRDCLEQRILVLSQCTYVVMDEADRMVDMGFEPDLKFILDAMPVSNIKPD 347

Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
                               RQT++FSATM   ++++++ +L+ P  + +       + I
Sbjct: 348 SDESENVQLLRELTGKVTPFRQTVMFSATMPVAVERLAKAYLRRPATVTIGIAGQVVDRI 407

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
           E   V       +K + LQ++L S+      I+F NQKK    +  +L++ G     +HG
Sbjct: 408 EQR-VEMINDDGRKLSRLQEILTSRQFEPPMIVFVNQKKGCEVIARALDRLGLKSTTLHG 466

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
              Q  R   L   K+GT  ++VA+D+A RG+D+ +V  V NFD+    E+Y HRIGRTG
Sbjct: 467 GKSQEQREASLLGLKQGTKDILVATDVAGRGIDVKNVSVVINFDMAKSIEDYTHRIGRTG 526

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
           RAG+ G A T ++  D   +  + ++I      L   +S + P L K + AQ
Sbjct: 527 RAGKKGTAITFLSNYDTDVMYDLRQMI------LKSPISKVPPELSKHEAAQ 572


>gi|318606043|emb|CBY27541.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 460

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 216/369 (58%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L  
Sbjct: 6   FSSLTLPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLDK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           +  G     + + L+L PTRELA QV+    +  +   N+ +  L GG P   Q   L  
Sbjct: 66  IAVGEF---VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI +H  +  L++++++ILV+DEADRMLDMGF   I ++ +  P  RQTL
Sbjct: 123 APHIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S    + P  +EV+     A  IE  F  T  +  K+  LL  +L S
Sbjct: 183 LFSATYPAGIEQISARVQRQPVNVEVDD-GDEAPAIEQVFFETTRE--KRLPLLISVL-S 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + ++FCN KK+  ++  +LE +G SV A+HG+++QR R ++L  F   + +++VA
Sbjct: 239 HYQPASCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V NF++    E ++HRIGRTGRAG  G A +L   +++    AIE
Sbjct: 299 TDVAARGLDIKDLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHAIE 358

Query: 362 KLIEKKVDW 370
             ++ K+ W
Sbjct: 359 DYLQMKLKW 367


>gi|328478045|gb|EGF47932.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus MTCC 5462]
          Length = 313

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 128/319 (40%), Positives = 193/319 (60%), Gaps = 6/319 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ A+  +G+ + TPIQ +TIPLVL+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFKELGLDHDLLKAIAQSGFEEATPIQAETIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++K     R  + L++ PTRELA Q  +   + G++  + V  + GG     Q ++L 
Sbjct: 61  QHIDKAD---RSIQALVISPTRELAIQTQEELYRLGRDKKIKVQAVYGGADIRRQIRQLA 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILDH  R  L + +++ LV+DEAD MLDMGFI  I+ I   +P  RQT
Sbjct: 118 DHPQIVVGTPGRILDHIGRHTLKLEHLDTLVLDEADEMLDMGFIDDIEKIVEQMPTERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + +++  F++ P  +++     TA+T+E  +V   A+  +K  ++ +L  
Sbjct: 178 LLFSATMPAAIMRLTNKFMKEPVIVKIKAKELTADTVEQYYV--RAKDYEKFDVMTRLFD 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     +IF   K+ V  L   L+ +G+    IHG++ Q+ RM +L  FK G +  +V
Sbjct: 236 VQDP-DLALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLV 294

Query: 301 ASDLAARGLDIPDVGHVFN 319
           A+D+AARGLDI  V HV+N
Sbjct: 295 ATDVAARGLDISGVTHVYN 313


>gi|296198571|ref|XP_002746771.1| PREDICTED: probable ATP-dependent RNA helicase DDX43 [Callithrix
           jacchus]
          Length = 637

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 139/373 (37%), Positives = 215/373 (57%), Gaps = 7/373 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE---KG 66
           P+V+  +  +G+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT  +++P    L+     
Sbjct: 240 PEVMENIKKSGFKKPTPIQAQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLDLQPTF 299

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           + +   P  L+L PTRELA QV     KY     L    + GG   + Q ++L +G D++
Sbjct: 300 KGQRNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIEELRKGVDII 358

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + NI  LV+DEADRMLDMGF P I  I   V   RQT++ SAT
Sbjct: 359 IATPGRLNDFQMNNFVNLKNITYLVLDEADRMLDMGFEPQIMKILLDVRPDRQTVMTSAT 418

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
               + ++++++L+ P  + V T    A  +++   + T  +  +K   +Q  LQS  T 
Sbjct: 419 WPRSVHRLAQSYLKEPMLVYVGTLDLVAVSSVKQNIIITTEE--EKWIHIQTFLQSLSTT 476

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F ++K    +L   L     S+ ++HG+ +QR R K L NFK G +++++A+DLA
Sbjct: 477 DKVIVFVSRKAVADHLSSELILGNMSIESLHGDREQRDREKALENFKTGKVRILIATDLA 536

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLD+ D+ HV+NFD P   E Y+HRIGRTGRAGR G + T + + D +    +  +++
Sbjct: 537 SRGLDVHDITHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTMTRNDWRFAPELVNILQ 596

Query: 366 KKVDWLNGDLSSL 378
           +    +  DL S+
Sbjct: 597 RANQIIPDDLLSM 609


>gi|183599789|ref|ZP_02961282.1| hypothetical protein PROSTU_03297 [Providencia stuartii ATCC 25827]
 gi|188022053|gb|EDU60093.1| hypothetical protein PROSTU_03297 [Providencia stuartii ATCC 25827]
          Length = 447

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 137/368 (37%), Positives = 207/368 (56%), Gaps = 4/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +L L   ++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP +  
Sbjct: 6   FTELELDESLINALADKGYERPTAIQAAAIPAAMDGRDVLGSAPTGTGKTAAFLLPAIQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVAD  ++   + +L +A + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRVLILTPTRELAMQVADQAKELCAHNHLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          +EIL++DEADRMLDMGF   I+ I     + +QT+
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVEILILDEADRMLDMGFANDIETIAGETRWRKQTM 185

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  E ++  SE  L++P  I+  +     + I+  F         K ALL  LL+
Sbjct: 186 LFSATLEGEAIRDFSERLLEDPVEIDAESSRRERKKIQQ-FYYRADNLQHKTALLCHLLK 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D  K+ I+F  +++ V  +   L   G   C + G + Q  R + +     G ++++V
Sbjct: 245 QEDVTKS-IVFVRKRERVREVVQWLRDAGIESCYLEGEMAQAKRNEAVRRLVTGQVKVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI +V HVFNFD+   A+ Y+HRIGRTGRAGR G A +L+   D      +
Sbjct: 304 ATDVASRGLDIDNVSHVFNFDMSRTADVYLHRIGRTGRAGRKGTAISLIEAHDYPLFGKV 363

Query: 361 EKLIEKKV 368
            + IE  +
Sbjct: 364 SRYIEDSI 371


>gi|320353576|ref|YP_004194915.1| DEAD/DEAH box helicase domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320122078|gb|ADW17624.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 411

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 141/389 (36%), Positives = 217/389 (55%), Gaps = 11/389 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L   +   + +AG+ + TPIQ  T+PL L   DV G  QTGTGKTA+F++ + 
Sbjct: 1   MQFEQLALPEPLGKGIAEAGFTECTPIQELTLPLTLGGKDVAGRGQTGTGKTAAFLITLF 60

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L K        PR LIL PTREL  Q+  +    GK+   ++    GG+ +  Q + L
Sbjct: 61  DRLLKNNPPASPNPRALILAPTRELVVQIHQDALLLGKHCGFSIQAAYGGVDYNKQREAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177
             G DVLI TPGR++D   +    + +IE+LVIDEADRM D+GFI  ++ +   +P    
Sbjct: 121 RTGVDVLIGTPGRLIDFLKQKIYTLADIEMLVIDEADRMFDLGFIGDLRFLLRRLPAFDK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ L+FSAT+   + +++  F+  P+++ V+  S TA+ IE      +   SK+   L  
Sbjct: 181 RQNLMFSATLNHRVMELAYEFMNMPEKVSVSGDSMTADKIEEIL---FHVSSKEKFPLLL 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++ M+  +IF N K+    L   L         I G++ Q  R++I+ +FK G + 
Sbjct: 238 GLLRREGMERTMIFVNTKREGERLQARLMANDHPCRLISGDVAQEKRLRIMRDFKAGKLP 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGL I  V HV N+D+P   E+Y+HRIGRT RAG  GKA +L  +  +  +
Sbjct: 298 MLIATDVASRGLHIEGVSHVINYDLPEDCEDYVHRIGRTARAGAEGKAISLADETGVLSL 357

Query: 358 DAIEKLIEKKV--DWLNGDLSSLN---PP 381
           +AIE+ I   +  +W   +L  ++   PP
Sbjct: 358 EAIEEYIGHPIPTEWAEDELFVIDYKHPP 386


>gi|158312770|ref|YP_001505278.1| DEAD/DEAH box helicase domain-containing protein [Frankia sp.
           EAN1pec]
 gi|158108175|gb|ABW10372.1| DEAD/DEAH box helicase domain protein [Frankia sp. EAN1pec]
          Length = 671

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 126/359 (35%), Positives = 203/359 (56%), Gaps = 14/359 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++G+  + V A+ + G ++P  IQ  T+PL L+R D+ G A+TGTGKT +F +P++ +
Sbjct: 106 FAEIGVRAETVAALAEVGIIRPFAIQELTLPLALERTDIIGQARTGTGKTLAFGIPIVQV 165

Query: 63  L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +    E    R   P+ L++ PTREL  QV  +  + G    L V  + GG  +E Q   
Sbjct: 166 VTAPDEGADGR---PQALVVVPTRELCVQVTADIARAGLGRGLRVLSVYGGRAYEPQLSA 222

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+++ TPGR+LD   +  L +  +  LV+DEAD MLD+GF+P ++ I + +P  R
Sbjct: 223 LRAGVDIVVGTPGRLLDLARQKALDLAGVRALVLDEADEMLDLGFLPDVERILAFLPEQR 282

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPS---STAETIEHCFVATYAQYSKKCALL 235
            T+LFSATM   +  ++  F+  P  +    P    +   T +H F    A    K  +L
Sbjct: 283 HTMLFSATMPGPVISLARRFMTRPVHVRAEQPDEGRTVPNTQQHVF---RAHALDKMEVL 339

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            ++LQ++ +    ++F   ++    +   L ++GF+   +HG++ Q  R + L  F+ G 
Sbjct: 340 ARVLQAE-SRGLAMVFVRTRRTADKVAEDLARRGFAAAPVHGDLGQGQREQALRAFRAGK 398

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           + ++VA+D+AARG+D+  V HV N+  P     Y+HRIGRTGRAG  G A T V  +D+
Sbjct: 399 VDVLVATDVAARGIDVGGVTHVVNYQCPEDEHAYLHRIGRTGRAGGSGVAVTFVDWDDL 457


>gi|291231214|ref|XP_002735561.1| PREDICTED: Ddx49-A-prov protein-like [Saccoglossus kowalevskii]
          Length = 445

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 150/370 (40%), Positives = 210/370 (56%), Gaps = 9/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL+  +V      G  KPTPIQ   IP +L+  D  G A+TG+GKTA+F LP+L  
Sbjct: 14  FSSLGLNDWLVKQCKAVGITKPTPIQYYCIPQILEGVDCLGCAKTGSGKTAAFALPILQK 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     L+L PTRELA Q+A+ F   GK   L  A++IGG     Q   L   
Sbjct: 74  LCEDPYGIY---ALVLTPTRELAFQIAEQFRILGKPIGLKDAVIIGGRDVMRQGMDLADK 130

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             V+I TPGR+ DH N      +  I+ LV+DEADR+L+  F   +Q I   +P  RQTL
Sbjct: 131 PHVVIATPGRLADHINSSNTFSLKKIKFLVLDEADRLLEDTFAEDLQVIFDALPEKRQTL 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ- 240
           LFSAT+TD+L+K+    L  P   +     +T E ++  +V   A+     A L  +LQ 
Sbjct: 191 LFSATLTDKLEKLQTLALNKPFFWQSKAEIATVEQLDQKYVLIPAKVRD--AYLVHILQK 248

Query: 241 --SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S+    + IIF N  KN  +L   L+   F    +H  I QR R+  L+ FK G +++
Sbjct: 249 ICSETEDYSMIIFSNTCKNCQSLYLMLKALEFPCTPLHSMIPQRDRIASLAQFKSGRVRI 308

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDIP V  V N +VP    +Y+HR+GRT RAGR G A TL+ + D+K I+
Sbjct: 309 LLATDVASRGLDIPIVQLVVNHNVPWSPIDYVHRVGRTARAGRGGMALTLMTQYDVKLIE 368

Query: 359 AIEKLIEKKV 368
           AIEK I  K+
Sbjct: 369 AIEKQINTKL 378


>gi|238758478|ref|ZP_04619655.1| ATP-independent RNA helicase dbpA [Yersinia aldovae ATCC 35236]
 gi|238703382|gb|EEP95922.1| ATP-independent RNA helicase dbpA [Yersinia aldovae ATCC 35236]
          Length = 457

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 136/375 (36%), Positives = 216/375 (57%), Gaps = 8/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L
Sbjct: 1   MSFSSLTLPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
             +  G     + + LIL PTRELA QV+    +  +   N+ +  L GG P   Q   L
Sbjct: 61  DKIAVGEF---VTQALILCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +++ TPGRI +H  +  L+++ ++ILV+DEADRMLDMGF   I ++ +  P  RQ
Sbjct: 118 VHAPHIVVGTPGRIQEHLRKKTLVLDELKILVLDEADRMLDMGFTDAIDDVIAYTPVQRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    ++++S    + P  +EV+        IE     T  +  K+  LL  +L
Sbjct: 178 TLLFSATYPAGIERISARVQREPLNVEVDD-GDEEPAIEQVLFETTRE--KRLPLLISVL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S     + ++FCN KK+  ++  +LE +G SV A+HG+++QR R ++L  F   + +++
Sbjct: 235 -SHYQPDSCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANHSCRVL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI D+  V NF++    E ++HRIGRTGRAG  G A +L   +++    A
Sbjct: 294 VATDVAARGLDIKDLALVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHA 353

Query: 360 IEKLIEKKVDWLNGD 374
           IE  ++ K+ W + +
Sbjct: 354 IEDYLQIKLKWTSAE 368


>gi|157376037|ref|YP_001474637.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157318411|gb|ABV37509.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 432

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 140/365 (38%), Positives = 213/365 (58%), Gaps = 10/365 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  LGL P+++  + +  YV PT +Q  TI  VL+  DV   A TG+GKTA+F LP++  
Sbjct: 15  FEQLGLIPELLARLTELEYVTPTLVQTGTIAAVLEGKDVLAGAITGSGKTAAFALPLIQR 74

Query: 62  ILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNK 117
           +L K    V+  +  TL+L PTRELA QVA++F+ Y K     + V  + GG+    Q  
Sbjct: 75  LLSKQSTSVKGNLIGTLVLVPTRELAQQVAESFKSYAKLIKPRVKVEAVFGGVSANTQML 134

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADVL+ TPGR+LD  +   + +  +  LV+DEADRML +GF   +  I + +P  
Sbjct: 135 ALRGGADVLVATPGRLLDLISSNAVKLGQVTSLVLDEADRMLSLGFEEELTEILAKLPKH 194

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTLLFSAT  +E++ +++  L +P  +EV   S    T+    V T  + SK  ALL  
Sbjct: 195 KQTLLFSATFPEEVKILTDKLLSSP--VEVQLQSEEKSTLTQQ-VYTVNRNSK-TALLAH 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++  D  +  ++F + K     L   LEK G +    H +  Q +R ++L  FK G I+
Sbjct: 251 LIKEND-WRQVLVFASAKNTCNRLEQKLEKLGIAAQVFHSDKAQGARTRVLEGFKSGEIR 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARG+DI  +  V N+++P    +Y+HRIGR+GRAG  G A +L++ ++  H 
Sbjct: 310 VLIATDIAARGIDIEKLPVVINYELPRSPADYMHRIGRSGRAGEAGLALSLISHDEYHHF 369

Query: 358 DAIEK 362
             IEK
Sbjct: 370 KIIEK 374


>gi|300120970|emb|CBK21212.2| unnamed protein product [Blastocystis hominis]
          Length = 617

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 133/332 (40%), Positives = 191/332 (57%), Gaps = 13/332 (3%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRARVRM 72
           AG+  PTPIQ +  P+ L   DV GIA TG+GKT +F+LP +       +L  G      
Sbjct: 210 AGFKAPTPIQSQGWPMALSGRDVVGIAATGSGKTLAFILPAIIHIRAQPMLRPGDG---- 265

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
           P  L+L PTRELA Q  +   ++G +  +    + GG+P   Q   L RGA+++I TPGR
Sbjct: 266 PICLVLSPTRELANQTQEECARFGTSSGIRNTCVYGGVPRRQQAYDLRRGAEIVIATPGR 325

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           +LD    G   +  +  LV+DEADRMLDMGF P I+ I S +   RQTL++SAT   E+Q
Sbjct: 326 LLDFLESGVTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQ 385

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
            ++ +FL NP  I+VN  S   +  +H   V       +K     ++L+S++     IIF
Sbjct: 386 ALARDFLTNP--IQVNIGSLDLKVTDHVKQVIKCVTEGQKLDETLKILRSKNPESRCIIF 443

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
              K+    L   L ++GF+  AIHG+ +QR R  +L  FK G + +MVA+D+A+RGLD+
Sbjct: 444 TQSKRGADELTRILRQRGFNALAIHGDKEQRERDFVLHEFKSGRVTIMVATDVASRGLDV 503

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
            D+  V N+D P+  E+YIHR+GR GR    G
Sbjct: 504 KDIRVVINYDFPSCVEDYIHRVGRAGRKTADG 535


>gi|254457791|ref|ZP_05071219.1| dead/deah box helicase domain protein [Campylobacterales bacterium
           GD 1]
 gi|207086583|gb|EDZ63867.1| dead/deah box helicase domain protein [Campylobacterales bacterium
           GD 1]
          Length = 453

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 143/352 (40%), Positives = 207/352 (58%), Gaps = 8/352 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L LS +++  + + GY + TPIQ + +P +L   DV   A+TG+GKTA+F + +L
Sbjct: 1   MKFSNLPLSKEMLHNLEEIGYKEMTPIQAEALPHILDGKDVIAQAKTGSGKTAAFGIGLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
           T L+  + RV+   +LIL PTRELA QVA       +  +N+ +  L GG  F  Q   L
Sbjct: 61  TKLQVKKFRVQ---SLILCPTRELADQVAKELRMLARATHNVKILTLCGGAAFGPQLGSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA +++ TPGRIL H  +  L + ++E+LV+DEADRMLDMGF   I  + S     +Q
Sbjct: 118 SHGAHIIVGTPGRILKHLKKATLSLEDLEMLVLDEADRMLDMGFSEEINEVLSFTKKRKQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT TDE+  +S+N LQ+       T + TA  I   F        +K   +  +L
Sbjct: 178 TLLFSATYTDEIMDISKN-LQHEAVSVKTTSTETANNITERFYEVNDH--QKLDTIVNIL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S    +N IIF N K     L  +L K+     AIHG+++Q  R  +L  F   +  ++
Sbjct: 235 -SNFKPENVIIFTNTKIEAKELAENLLKKKIDALAIHGDLEQYERNDVLVQFANRSCPVL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +A+D+AARGLDI ++  V N+D+P+  E Y HRIGRTGRAG+ G AFTL ++
Sbjct: 294 IATDVAARGLDIKEMSMVINYDLPHGDETYTHRIGRTGRAGQDGLAFTLFSQ 345


>gi|145634056|ref|ZP_01789767.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
 gi|145268500|gb|EDK08493.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
          Length = 415

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 214/372 (57%), Gaps = 10/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDLPLHPIVRDALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   +        PR LIL PTREL+ Q++++ E   K   L  +L  GG  ++ Q + +
Sbjct: 71  LLTHQDPNLEYPHPRALILAPTRELSVQISNDAEFLSKASGLNTSLAYGGDGYDKQLQAI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P    
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVICLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           R T+LFSAT++ ++++++   + +P+ IE+     T   I E  F   Y     K ALL 
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELF---YPSNQDKMALLL 247

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ +   +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G +
Sbjct: 248 TLMEDE-WPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDL 306

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ ARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   +
Sbjct: 307 DILVATDVVARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMN 366

Query: 357 IDAIEKLIEKKV 368
           + AIE+ I   +
Sbjct: 367 LPAIEEYIGHSI 378


>gi|121998794|ref|YP_001003581.1| DEAD/DEAH box helicase domain-containing protein [Halorhodospira
           halophila SL1]
 gi|121590199|gb|ABM62779.1| DEAD/DEAH box helicase domain protein [Halorhodospira halophila
           SL1]
          Length = 430

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 142/385 (36%), Positives = 210/385 (54%), Gaps = 14/385 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +   V+  + DAG    TPIQ  T+P  L   ++ G AQTGTGKTA+FV+  L  
Sbjct: 11  FTDLPIHDAVLDGLDDAGLSHCTPIQAATLPRTLAGGNIAGEAQTGTGKTAAFVVATLHH 70

Query: 63  LEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L           P  ++L PTRELA Q+ ++ E+ G    L  A + GG  +E+Q K+L+
Sbjct: 71  LMSHPVEEDAVGPWAIMLAPTRELALQIYNDAEQIGAYTGLKFAAVYGGTGYESQRKQLQ 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ- 179
            G DV+I TPGRI+D   +    + NIE++V+DEADRM D+GFI  I+ +   +P   Q 
Sbjct: 131 EGVDVIIGTPGRIIDFHKQKVFNLRNIEVVVLDEADRMFDLGFISDIRFLLRRMPPADQR 190

Query: 180 -TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             LLFSAT++  + +++   + +P R+ V +   TA+ +       +     K + +  L
Sbjct: 191 LNLLFSATLSYRVMELAWEHMGDPPRVAVESEQRTADHVRQTLY--HIAKEDKTSFVVGL 248

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ  D  +  +IF N K+    L   L+  G     I G+I Q  R ++L  F+ G + +
Sbjct: 249 LQHIDPRRT-LIFANTKRAAERLVGYLKGNGIEAAVISGDIPQNKREQLLEQFRTGELPV 307

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V +D+AARGL I  V HV NFD+P+  E+Y+HRIGRT RAG  G A +L   E +  + 
Sbjct: 308 LVGTDVAARGLHIDAVSHVINFDLPHDPEDYVHRIGRTARAGESGDAISLACDEYVFSLP 367

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLE 383
            IE  + +K+        S  PP E
Sbjct: 368 DIEAYLAEKI-------PSAPPPAE 385


>gi|238793781|ref|ZP_04637402.1| ATP-dependent RNA helicase srmB [Yersinia intermedia ATCC 29909]
 gi|238726845|gb|EEQ18378.1| ATP-dependent RNA helicase srmB [Yersinia intermedia ATCC 29909]
          Length = 441

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 159/448 (35%), Positives = 241/448 (53%), Gaps = 27/448 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP L 
Sbjct: 5   NFSELDLDERLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K+  L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I +   + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQT 184

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+  E +++ +E  L  P  +E +      + I+  +         K ALL  LL
Sbjct: 185 LLFSATLEGEAIREFAERILNEPVELEADPSRRERKKIQQWYYRA-DNIEHKTALLVHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +  K+ IIF   ++ V  L   L + G +   + G + Q  R + +    +G + ++
Sbjct: 244 KQPEVQKS-IIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLGDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI D+ HVFNFD+P  ++ Y+HRIGRTGRAGR G A +LV   D  H+  
Sbjct: 303 VATDVASRGLDIDDISHVFNFDLPLTSDVYLHRIGRTGRAGRKGVAISLVEAHD--HL-- 358

Query: 360 IEKLIEKKVDWLNGDLSS-LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
                      L G +   LN PL+   I   +  R  +  P + T     KK  + +K 
Sbjct: 359 -----------LLGKIGRYLNEPLKPRVI---DELRPTSKAPSEKTTGKPSKKVLAKRKE 404

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFR 446
              LKE+ K  K++  ++  DA ++G R
Sbjct: 405 ---LKEASK-EKVKVKVRHRDAKNVGKR 428


>gi|289548721|ref|YP_003473709.1| DEAD/DEAH box helicase [Thermocrinis albus DSM 14484]
 gi|289182338|gb|ADC89582.1| DEAD/DEAH box helicase domain protein [Thermocrinis albus DSM
           14484]
          Length = 365

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 140/368 (38%), Positives = 217/368 (58%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+   LS  +  ++ + G+  PTPIQ + IPL L  +D+ G A TGTGKTA+F +P+L
Sbjct: 1   MEFSFSQLSEPLRKSITEMGFQHPTPIQREAIPLALAGYDLLGQAATGTGKTAAFGIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K      +   LIL PTRELA QV D   +  +   L V    GG       + L 
Sbjct: 61  EKLGKED----LLGALILTPTRELALQVKDQLFQLARYKGLRVFAFYGGTSVAKDIQVLS 116

Query: 121 R-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI D   RG + +  +   V+DEAD MLDMGFI  I+ I S +P  RQ
Sbjct: 117 TVPPHVVVGTPGRIKDLIGRGYISLEKVRFFVLDEADLMLDMGFIEDIEYIVSHLPNRRQ 176

Query: 180 TLLFSATMTDELQKVSENFLQNPKRI-EVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           T +FSAT+  +++++++ +L+   R+ +V TP    +  E       +  ++K + L+++
Sbjct: 177 TFMFSATLPRQVEELAKRYLREHYRVVKVYTPELRPKIEERLI--RLSSSAQKLSELEKI 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ +  ++  I+F   KK+  +L   L ++GF+  A+HG++ QR R   L  F++G +++
Sbjct: 235 LR-EHLLEKVIVFVKTKKDAKDLHEVLRRKGFNAVALHGDMTQRQRESALKLFRDGKVKI 293

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RGLDI  VG V N+ +P   E YIHRIGRTGR G +GKA++ V  ED + + 
Sbjct: 294 VVATDVASRGLDIKGVGLVINYHLPEDPEIYIHRIGRTGRIGSYGKAYSFVTPEDSRALW 353

Query: 359 AIEKLIEK 366
            I++L EK
Sbjct: 354 RIKRLKEK 361


>gi|294909743|ref|XP_002777840.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239885802|gb|EER09635.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 625

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 129/366 (35%), Positives = 207/366 (56%), Gaps = 19/366 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +  L   ++  +  AG+V PTPIQ++  P+ L   D+ GIA+TG+GKT +F+LP +  
Sbjct: 179 FEEACLPDYIMVEIQKAGFVNPTPIQVQGWPVALCGRDMVGIAETGSGKTLAFLLPAVVH 238

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L+KG      P  L+L PTRELA Q+ +  +++G +  ++     GG+P   Q 
Sbjct: 239 INAQPYLQKGDG----PIVLVLAPTRELALQIKEECDRFGSSSRISNTCCYGGVPRGPQA 294

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+ G ++ I TPGR++D        +  +  LV+DEADRMLDMGF P ++ I S +  
Sbjct: 295 RMLQNGVEICIATPGRLIDFLESEVTNLRRVTYLVLDEADRMLDMGFEPQVRKIVSQIRP 354

Query: 177 TRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            RQTL++SAT   ++Q+++ +   + P  + V         I+  FV    + + K   L
Sbjct: 355 DRQTLMWSATWPKDVQQLARDLCNEEPVHVTVGRSGHACHNIQQ-FVEVVEE-NGKAERL 412

Query: 236 QQLLQSQDTMKNGI------IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           Q L+++  +   G+      IF + K+   ++   L + G+   AIHG+  Q  R  +L+
Sbjct: 413 QALMRAVASASGGVWESKALIFTDTKRCADDITRVLRRDGWPALAIHGDKKQTERDWVLA 472

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G + +M+A+D+A+RGLD+ DV +V N+D P   E+Y+HRIGRTGRAG HG A++  
Sbjct: 473 EFKTGRMPIMIATDVASRGLDVKDVKYVINYDFPGTIEDYVHRIGRTGRAGAHGTAYSFF 532

Query: 350 AKEDIK 355
             +  K
Sbjct: 533 TADKAK 538


>gi|325188272|emb|CCA22812.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 470

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 214/379 (56%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+ KP+ IQ + +  +L  HD    AQ+GTGKTA+F +   +I
Sbjct: 99  FDAMELREDLLRGIYAYGFEKPSAIQQRAVKPILLGHDCIAQAQSGTGKTATFTV---SI 155

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    ++  + LIL PTRELA Q+       G   ++ V   +GG         L++G
Sbjct: 156 LQKININLKETQALILAPTRELAQQIVKVIAAIGDYMSINVHACVGGTAVRDDIHTLQQG 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ D  N+G L    +++ V+DEAD ML  GF   I ++   +P + Q  L
Sbjct: 216 VHIVVGTPGRVGDMINQGALRTEAVKMFVLDEADEMLSRGFQDQIYDVFRFLPESVQVAL 275

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
           FSATM  E+ +V++ F+++P RI V     T E I+  FVA   +   +   C L + L 
Sbjct: 276 FSATMPQEVLEVTQKFMRDPIRIMVKRDELTLEGIKQFFVAIEREEWKFDTLCDLYETL- 334

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   II+CN ++ V  L   ++ + F+V A+HG++DQR R  I+  F+ G+ +++
Sbjct: 335 ----TITQAIIYCNTRRKVDWLTEKMQSKDFTVSAMHGDMDQRQRDIIMREFRSGSSRVL 390

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   + + D++++  
Sbjct: 391 ITTDLLARGIDVQQVSLVVNYDLPLNRENYIHRIGRSGRFGRKGVAINFLTECDVRYLKD 450

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IEK    +++ +  +++ L
Sbjct: 451 IEKFYNTQIEEMPMNVADL 469


>gi|195552710|ref|XP_002076525.1| GD17585 [Drosophila simulans]
 gi|194202136|gb|EDX15712.1| GD17585 [Drosophila simulans]
          Length = 786

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 134/373 (35%), Positives = 214/373 (57%), Gaps = 14/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F   G   +++ AV  A Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 268 FGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMH 327

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + +K       P  LIL PTREL+ Q+ +  +K+GK YNL V    GG     Q+K LE
Sbjct: 328 VMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALE 387

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA++++ TPGR++D        +  +  LV+DEADRM  MGF P +++I + V   RQ 
Sbjct: 388 QGAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQC 447

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT    +++++ + L +P RI     +   + I            K   LL  L++
Sbjct: 448 LMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLVK 507

Query: 241 --SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S+ ++   +IF  +K +   + ++L  + ++   +HG++DQ  R K+++ FK     +
Sbjct: 508 FLSEGSV---LIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDI 564

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED----- 353
           +VA+D+AARGLDIP + +V N+D     E + HRIGRTGRAG  G AFTLV  +D     
Sbjct: 565 LVATDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAFTLVTDKDKEFAG 624

Query: 354 --IKHIDAIEKLI 364
             +++++  ++L+
Sbjct: 625 HLVRNLEGADQLV 637


>gi|123442077|ref|YP_001006060.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089038|emb|CAL11856.1| ATP-dependent RNA helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 460

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 216/369 (58%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L  
Sbjct: 6   FSSLTLPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLDK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           +  G     + + L+L PTRELA QV+    +  +   N+ +  L GG P   Q   L  
Sbjct: 66  IAVGEF---VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI +H  +  L++++++ILV+DEADRMLDMGF   I ++ +  P  RQTL
Sbjct: 123 APHIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S    + P  +EV+     A  IE  F  T  +  K+  LL  +L S
Sbjct: 183 LFSATYPAGIEQISARVQRQPVNVEVDD-GDEAPAIEQVFFETTRE--KRLPLLISVL-S 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + ++FCN KK+  ++  +LE +G SV A+HG+++QR R ++L  F   + +++VA
Sbjct: 239 HYQPASCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V NF++    E ++HRIGRTGRAG  G A +L   +++    AIE
Sbjct: 299 TDVAARGLDIKDLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHAIE 358

Query: 362 KLIEKKVDW 370
             ++ K+ W
Sbjct: 359 DYLQMKLKW 367


>gi|74006728|ref|XP_850382.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 2 [Canis familiaris]
          Length = 663

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 220/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 182 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241

Query: 63  L-------------EKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
           +             E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 242 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 301

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 302 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 361

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 362 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 420

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + S K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 421 -WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 479

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 480 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 539

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 540 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 571


>gi|325188273|emb|CCA22813.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 465

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 214/379 (56%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+ KP+ IQ + +  +L  HD    AQ+GTGKTA+F +   +I
Sbjct: 94  FDAMELREDLLRGIYAYGFEKPSAIQQRAVKPILLGHDCIAQAQSGTGKTATFTV---SI 150

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    ++  + LIL PTRELA Q+       G   ++ V   +GG         L++G
Sbjct: 151 LQKININLKETQALILAPTRELAQQIVKVIAAIGDYMSINVHACVGGTAVRDDIHTLQQG 210

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ D  N+G L    +++ V+DEAD ML  GF   I ++   +P + Q  L
Sbjct: 211 VHIVVGTPGRVGDMINQGALRTEAVKMFVLDEADEMLSRGFQDQIYDVFRFLPESVQVAL 270

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
           FSATM  E+ +V++ F+++P RI V     T E I+  FVA   +   +   C L + L 
Sbjct: 271 FSATMPQEVLEVTQKFMRDPIRIMVKRDELTLEGIKQFFVAIEREEWKFDTLCDLYETL- 329

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   II+CN ++ V  L   ++ + F+V A+HG++DQR R  I+  F+ G+ +++
Sbjct: 330 ----TITQAIIYCNTRRKVDWLTEKMQSKDFTVSAMHGDMDQRQRDIIMREFRSGSSRVL 385

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   + + D++++  
Sbjct: 386 ITTDLLARGIDVQQVSLVVNYDLPLNRENYIHRIGRSGRFGRKGVAINFLTECDVRYLKD 445

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IEK    +++ +  +++ L
Sbjct: 446 IEKFYNTQIEEMPMNVADL 464


>gi|260598959|ref|YP_003211530.1| ATP-dependent RNA helicase SrmB [Cronobacter turicensis z3032]
 gi|260218136|emb|CBA32943.1| ATP-dependent RNA helicase srmB [Cronobacter turicensis z3032]
          Length = 444

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 136/354 (38%), Positives = 207/354 (58%), Gaps = 6/354 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ A+ + G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP L  
Sbjct: 6   FSELELDDSLLDALQEKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVA++  +  K+ +L +A + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAMQVAEHARELAKHTHLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I     + +QTL
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQTL 185

Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVN-TPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LFSAT+  D ++  +E  L+ P  +EV+ TPS+      H +         K ALL  LL
Sbjct: 186 LFSATLEGDAIKDFAERLLEEP--VEVSATPSTRERKKIHQWYYRADNIEHKTALLVHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +  ++ I+F  +++ V  L + L + G + C + G + Q  R + +    +G + ++
Sbjct: 244 KQPEATRS-IVFVRKRERVHELANQLRQAGINNCYLEGEMVQVKRNEAIKRLTDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +A+D+AARG+DIPDV HV NFD+P  A+ Y+HRIGRT RAGR G A +LV   D
Sbjct: 303 IATDVAARGIDIPDVSHVINFDMPRTADTYLHRIGRTARAGRKGTAISLVEAHD 356


>gi|91210637|ref|YP_540623.1| ATP-dependent RNA helicase DbpA [Escherichia coli UTI89]
 gi|117623595|ref|YP_852508.1| ATP-dependent RNA helicase DbpA [Escherichia coli APEC O1]
 gi|218558330|ref|YP_002391243.1| ATP-dependent RNA helicase DbpA [Escherichia coli S88]
 gi|237705373|ref|ZP_04535854.1| ATP-independent RNA helicase DbpA [Escherichia sp. 3_2_53FAA]
 gi|91072211|gb|ABE07092.1| ATP-independent RNA helicase DbpA [Escherichia coli UTI89]
 gi|115512719|gb|ABJ00794.1| ATP-independent RNA helicase DbpA [Escherichia coli APEC O1]
 gi|218365099|emb|CAR02806.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           S88]
 gi|226900130|gb|EEH86389.1| ATP-independent RNA helicase DbpA [Escherichia sp. 3_2_53FAA]
 gi|294490917|gb|ADE89673.1| ATP-independent RNA helicase DbpA [Escherichia coli IHE3034]
 gi|307627083|gb|ADN71387.1| ATP-dependent RNA helicase DbpA [Escherichia coli UM146]
 gi|323949054|gb|EGB44946.1| DEAD/DEAH box helicase [Escherichia coli H252]
 gi|323956904|gb|EGB52636.1| DEAD/DEAH box helicase [Escherichia coli H263]
          Length = 457

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 218/377 (57%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQDAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+  ++C  L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQSVCDVLNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W     +S   PLE
Sbjct: 363 KLNWQTLPANSSIVPLE 379


>gi|299532536|ref|ZP_07045926.1| hypothetical protein CTS44_17127 [Comamonas testosteroni S44]
 gi|298719483|gb|EFI60450.1| hypothetical protein CTS44_17127 [Comamonas testosteroni S44]
          Length = 700

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 145/411 (35%), Positives = 225/411 (54%), Gaps = 56/411 (13%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGI------AQTGTGKTASF 55
           F +LGL+P+++ AV D GY +PT +Q++ IPL + +  D  G       +QTG+GKTA+F
Sbjct: 53  FVELGLAPELIQAVTDLGYTQPTAVQLQAIPLAMGEGADADGFIDLMVSSQTGSGKTAAF 112

Query: 56  VLPMLTILEKGRA---------------------------------------RVRMPRTL 76
           +LP+L  L K RA                                       +  +P  L
Sbjct: 113 LLPVLHTLIKQRAVADAAAKAEFERLCAEAAAKGEPAPKRNKRKDPTNARNFKAAVPGAL 172

Query: 77  ILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           +L PTRELA QVA D  E       + +A ++GGIP++ Q  KL+  AD+++ TPGR+LD
Sbjct: 173 VLCPTRELAQQVAHDAIELVKHCRGIRIANVVGGIPYQLQIAKLQ-NADLVVATPGRLLD 231

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
                ++ ++ ++ LV+DEADRMLD+GF   +  +  L    +QT++FSAT    +Q+++
Sbjct: 232 LQRSMQIKLDKVQFLVVDEADRMLDLGFSDDLAEVNQLTAERKQTMMFSATFAPRIQQLA 291

Query: 196 ENFLQ----NPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQSQDTMKNGII 250
              +     N K+I + TP      I+   F A   Q+ +K  LL   L+   ++   I+
Sbjct: 292 MRVMHDGGANVKKITIATPQEKHANIKQALFWADNMQHKRK--LLDHWLRD-SSINQAIV 348

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F + +     L + L++ GFS  A+HG + Q  R + L   + G +Q++VA+D+AARG+D
Sbjct: 349 FASTQVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGID 408

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +P + HVFN+ +P +AE+Y HRIGRTGRAGR G A T     D + +  IE
Sbjct: 409 VPTITHVFNYGLPMKAEDYTHRIGRTGRAGREGVAVTFAEFRDRRRVFDIE 459


>gi|74006736|ref|XP_861449.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 8 [Canis familiaris]
          Length = 663

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 220/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 182 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 242 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 301

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 302 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 361

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 362 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 420

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + S K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 421 -WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 479

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 480 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 539

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 540 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 571


>gi|308485730|ref|XP_003105063.1| hypothetical protein CRE_20763 [Caenorhabditis remanei]
 gi|308257008|gb|EFP00961.1| hypothetical protein CRE_20763 [Caenorhabditis remanei]
          Length = 401

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 132/369 (35%), Positives = 210/369 (56%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + IP +L+  DV   AQ+GTGKTA+F + +L  
Sbjct: 28  FDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQT 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 88  LD---TQVRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYG 144

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   + +I   +P   Q +L
Sbjct: 145 QHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVL 204

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L+   L   
Sbjct: 205 LSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDKEEWKFDTLID--LYDT 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   ++FCN ++ V  L   +++  F+V ++HG+++Q+ R +++  F+ GT ++++++
Sbjct: 263 LTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLIST 322

Query: 303 DLAARGLDIPDVG--HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           D+ ARGLD+P V    V N+D+PN  E YIHRIGR+GR GR G A   V ++D++ +  I
Sbjct: 323 DVWARGLDVPQVSLVSVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDI 382

Query: 361 EKLIEKKVD 369
           E+    ++D
Sbjct: 383 EQYYSTQID 391


>gi|158514835|sp|A3LQ01|DED1_PICST RecName: Full=ATP-dependent RNA helicase DED1
          Length = 647

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 136/341 (39%), Positives = 198/341 (58%), Gaps = 19/341 (5%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT---------ILEKGRARVR 71
           + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+         I E   A   
Sbjct: 188 FTKPTPVQKYSVPIVAGGRDLMACAQTGSGKTGGFLFPVLSESYINGPAPIAESTGAFSS 247

Query: 72  M---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
               P  L++ PTREL +Q+ D  +K+     +  A++ GG     Q + L++G D+L+ 
Sbjct: 248 HKVHPTILVMAPTRELVSQIYDEAKKFAYRSWVKPAVVYGGADIGQQIRNLDKGCDLLVA 307

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFS 184
           TPGR+ D   RG++ + NI+ LV+DEADRMLDMGF P I++I           RQTL+FS
Sbjct: 308 TPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRHIVQECDMPDVQDRQTLMFS 367

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT   ++Q ++ +FL++   + V    ST+E I    +  Y +  +K ++L  LL + D 
Sbjct: 368 ATFPTDIQMLARDFLKDYIFLSVGRVGSTSENITQKIL--YVEDEEKKSVLLDLLSAGDA 425

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
               IIF   K+   NL   L  QGF   AIHG+  Q  R K L+ FK G   ++VA+ +
Sbjct: 426 GLT-IIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGAAPILVATAV 484

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A
Sbjct: 485 AARGLDIPNVAHVINYDLPSDIDDYVHRIGRTGRAGNVGIA 525


>gi|170589285|ref|XP_001899404.1| KIAA0801 protein [Brugia malayi]
 gi|158593617|gb|EDP32212.1| KIAA0801 protein, putative [Brugia malayi]
          Length = 964

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 134/352 (38%), Positives = 204/352 (57%), Gaps = 7/352 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G+  K++  +    Y KPTPIQ + IP ++   DV GIA+TG+GKT +F+LPM   
Sbjct: 306 WAQCGVEWKILSTLKKLEYKKPTPIQCQAIPAIISGRDVIGIAKTGSGKTLAFLLPMFRH 365

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL++     +  P  +I+ PTRELA Q      K+ K  N+ VA + GG+    Q   L+
Sbjct: 366 ILDQPELEEMDGPIAVIMSPTRELAMQTWKEANKFAKQLNVRVACVYGGVGISDQIGDLK 425

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA+V++CT GR+ D    N+GK+  +  +  LV+DEADRM DMGF P +  I + +   
Sbjct: 426 RGAEVVVCTVGRLTDMLAANKGKVTNLRRVTYLVLDEADRMFDMGFEPQVMKIVNNIRPD 485

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT   +++ ++   L  P  I V   S   + +    V    ++ K   LL+ 
Sbjct: 486 RQTVLFSATFPRQMEALARKILDKPIEIMVGGKSVVCDDVNQNVV-ILEEHQKMLKLLE- 543

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL       N ++F ++++   +L   L + G++   +HG IDQ  R   + ++K G I+
Sbjct: 544 LLGVYWENGNVLVFVDKQEKADDLVAQLMRSGYNCAPLHGGIDQFDRDSTILDYKAGKIK 603

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           L+VA+ +AARGLDI  +  V N+D PN  E+Y+HR+GRTGRAG  G A+T +
Sbjct: 604 LLVATSVAARGLDIKKLILVVNYDCPNHYEDYVHRVGRTGRAGNKGYAYTFI 655


>gi|115492615|ref|XP_001210935.1| hypothetical protein ATEG_00849 [Aspergillus terreus NIH2624]
 gi|121742543|sp|Q0CZN5|DRS1_ASPTN RecName: Full=ATP-dependent RNA helicase drs1
 gi|114197795|gb|EAU39495.1| hypothetical protein ATEG_00849 [Aspergillus terreus NIH2624]
          Length = 821

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 139/362 (38%), Positives = 204/362 (56%), Gaps = 3/362 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS  ++  +    +  PTPIQ KTIP+ L   D+ G A TG+GKTA+FV+P+L  
Sbjct: 306 FQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILER 365

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++ 
Sbjct: 366 LLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKR 425

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 426 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTM 485

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMTD + K+    L  P R+ V++  +T+ T+   FV     +  K+   L  L +
Sbjct: 486 LFSATMTDTVDKLIRVGLNRPVRLMVDSKKNTSLTLVQEFVRLRPGREDKRLGYLLYLCK 545

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  I+F  QK+    +       G     +HG++ Q  R+K + NF++G +  ++
Sbjct: 546 EIYTGRV-IVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVENFRDGKVAFLL 604

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + A 
Sbjct: 605 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAA 664

Query: 361 EK 362
            K
Sbjct: 665 VK 666


>gi|194868558|ref|XP_001972305.1| GG13958 [Drosophila erecta]
 gi|190654088|gb|EDV51331.1| GG13958 [Drosophila erecta]
          Length = 786

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 132/355 (37%), Positives = 208/355 (58%), Gaps = 7/355 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F   G   +++ AV  A Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 269 FGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMH 328

Query: 62  ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++++ + +    P  LIL PTREL+ Q+ +  +K+GK YNL V    GG     Q+K LE
Sbjct: 329 VMDQRQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALE 388

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA++++ TPGR++D        +  +  LV+DEADRM  MGF P +++I + V   RQ 
Sbjct: 389 QGAEIIVATPGRMIDMVKMKATNLRRVTYLVLDEADRMFHMGFEPQVRSICNHVRPDRQC 448

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT    +++++ + L +P RI     +   + I            K   LL  L++
Sbjct: 449 LMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLVK 508

Query: 241 --SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S+ ++   +IF  +K +   + ++L  + ++   +HG++DQ  R K+++ FK     +
Sbjct: 509 FLSEGSV---LIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDI 565

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +VA+D+AARGLDIP + +V N+D     E + HRIGRTGRAG  G AFTLV  +D
Sbjct: 566 LVATDVAARGLDIPHIKNVVNYDTARDIETHTHRIGRTGRAGEKGNAFTLVTDKD 620


>gi|52430509|gb|AAH82849.1| DDX5 protein [Xenopus laevis]
          Length = 608

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 142/421 (33%), Positives = 226/421 (53%), Gaps = 15/421 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+ A+    + +PTPIQ +  P+ L   D+ G+A TG+GKT S++LP +
Sbjct: 92  LNFNEASFPANVMEAIKRQNFTEPTPIQGQGWPVALSGLDMVGVAMTGSGKTLSYLLPGI 151

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   L++G      P  L+L PTRELA QV     +YG+   L    + GG P   
Sbjct: 152 VHINHQPFLQRGDG----PILLVLAPTRELAQQVQQVAAEYGRACRLRSTCIYGGAPKGP 207

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +N    LV+DEADRMLDMGF P I+ I   +
Sbjct: 208 QIRDLERGVEICIATPGRLIDFLEAGKTNLNRCTYLVLDEADRMLDMGFEPQIRKIVDQI 267

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +   K 
Sbjct: 268 RPDRQTLMWSATWPKEVRQLAEDFLRDYVHINIGALELSANHNILQIVDVCNDGEKDDKL 327

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+   +L   L + G+    IHG+  Q+ R  +L+ FK
Sbjct: 328 VRLMEEIMSEKENKT-IVFVETKRRCDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFK 386

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 387 HGKSPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSSKTGTAYTFFTPG 446

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           +IK ++ +  ++ +    +N  L  L     +       + R++     K  G+DR  +N
Sbjct: 447 NIKQVNDLISVLREANQAINPKLLQLVEDRGRFRGRGGMNDRRDRFSSGKRGGWDR--EN 504

Query: 413 Y 413
           Y
Sbjct: 505 Y 505


>gi|29830666|ref|NP_825300.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680]
 gi|29607778|dbj|BAC71835.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 747

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 132/348 (37%), Positives = 188/348 (54%), Gaps = 5/348 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L
Sbjct: 52  LTFGDLGLPEGVVRKLAQNGVTAPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTL 111

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  G    + PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LE
Sbjct: 112 ARLAGGHTDKKKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALE 171

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVL+ TPGR+ D  NRG   + N+E+ V+DEAD+M D+GF+P +  +   +P   Q 
Sbjct: 172 RGVDVLVATPGRLRDIINRGACSLANVEVAVLDEADQMSDLGFLPEVTELFDQIPAGGQR 231

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM +E+  + + +L NP   EV++      T+ H  +       K  A +   + 
Sbjct: 232 MLFSATMENEISTLVKRYLTNPVTHEVDSAQGNVTTMSHHILVV---KPKDKAPVTAAIA 288

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+      IIF   +     +   L   G    A+HG + Q +R + L++FK+G +  +V
Sbjct: 289 SRKGRT--IIFVRTQLGADRIAEQLRDAGVKADALHGGMTQGARTRTLADFKDGYVNALV 346

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           A+D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L
Sbjct: 347 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSL 394


>gi|153831607|ref|ZP_01984274.1| ATP-dependent rna helicase, dead box family [Vibrio harveyi HY01]
 gi|148872117|gb|EDL70934.1| ATP-dependent rna helicase, dead box family [Vibrio harveyi HY01]
          Length = 443

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 137/388 (35%), Positives = 208/388 (53%), Gaps = 10/388 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + K T IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKDLGLDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L+      + PR +IL PTRELA QV               AL++GG  F  Q K L
Sbjct: 61  HKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLGGLTYDAALILGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGR+ DH     L ++ +E LV+DEADRMLD+GF P ++ I       R 
Sbjct: 121 RRYPKFIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHKAAKHRRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+   E+  ++   L  PKRI +   +   + I   F         K A+L++
Sbjct: 181 QTLMFSATLDHAEVNDIASEMLNAPKRIAIGVSNEEHKDITQKFYLC-DHLDHKEAILER 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+  +  +  IIF   + +   L + L ++     A+ GN++Q  R  I+S F+    +
Sbjct: 240 VLEEAE-YRQVIIFTATRDDTERLTNKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLDI  V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D    
Sbjct: 299 ILVTTDVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSF 358

Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNP 380
             +E  +++ +++     L G    L P
Sbjct: 359 KRVETYLQQDLNFSVFEDLKGKFKGLKP 386


>gi|148613133|gb|ABQ96191.1| vasa [Scaptotrigona postica]
 gi|205318891|gb|ACI02437.1| vasa [Frieseomelitta varia]
          Length = 624

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 133/364 (36%), Positives = 208/364 (57%), Gaps = 15/364 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F   GL   V+  +  +GY KPTP+Q   +P+++   D+   AQTG+GKTA+F +P++ T
Sbjct: 196 FEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPIINT 255

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +LE+    V       P+ +I+ PTREL  Q+     K+  N  L   +  GG     Q 
Sbjct: 256 LLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQR 315

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---SL 173
            KL  G  +L+ TPGR+LD   +G++  ++++ LV+DEADRMLDMGF+P I+ +    ++
Sbjct: 316 GKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHETM 375

Query: 174 VPF-TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           VP   RQTL+FSAT  DE+Q ++  FL N   + V         +   F       +KK 
Sbjct: 376 VPLGERQTLMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACSDVGRNFYEV--ARNKKK 433

Query: 233 ALLQQLLQSQD---TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            LL+++L+ ++   T+   ++F   KK    +   L +  +   +IHG+  QR R + L+
Sbjct: 434 DLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALA 493

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK G + ++VA+ +AARGLDI +V HV N+D+P   + Y+HRIGRTGR G  G+A +  
Sbjct: 494 DFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRATSFF 553

Query: 350 AKED 353
             E+
Sbjct: 554 DPEE 557


>gi|332297922|ref|YP_004439844.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM
           12168]
 gi|332181025|gb|AEE16713.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM
           12168]
          Length = 610

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/366 (34%), Positives = 218/366 (59%), Gaps = 6/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +  L  ++   +  AGYV  TP+Q + +   L+  D+   +QTGTGKTA++++ ++
Sbjct: 1   MEFTEFDLHEELQKGIAGAGYVTCTPVQEQVLKGSLEGADLYVQSQTGTGKTAAYLISII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +   R  V   + L++ PTRELA QV    +K  +   L      GG+ +  Q   L+
Sbjct: 61  QEMLT-REEVAGKKALVMVPTRELAVQVEQEAKKLLEFTPLKAGSFYGGVGYTQQTAMLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--R 178
              +++I TPGR++D    G + ++++  LV+DEADRM DMGF P ++ +  ++P T  R
Sbjct: 120 NNVNIIIGTPGRVIDLQESGAMDLSSVAFLVVDEADRMFDMGFYPDLRTLIKVLPKTHDR 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT+   ++ ++  + +  K I +     T E I+   +  +     K  LL  +
Sbjct: 180 QTMLFSATLNTYVKNLAWEYTEEAKEITIEAEQLTVEEIDQVLL--HVSSDSKMKLLLGI 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ  +  ++ I+FCN K++   +   L+  G     I G++ Q  R+++L +FK G+++ 
Sbjct: 238 LQ-HEKPESVIVFCNTKRSCEVVAKRLQLNGIESEFIIGDLPQAKRLQVLESFKRGSLKC 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+  V N+D+PN +ENY+HRIGRT RAG+ GKA+T  +++D+ ++ 
Sbjct: 297 LVATDVAARGIDVNDLAMVVNYDLPNESENYVHRIGRTARAGKSGKAYTFCSEQDVYNLP 356

Query: 359 AIEKLI 364
           AIE+ +
Sbjct: 357 AIERYL 362


>gi|229514570|ref|ZP_04404031.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
 gi|229348550|gb|EEO13508.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
          Length = 452

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 138/389 (35%), Positives = 211/389 (54%), Gaps = 12/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + + T IQ + IPL +   D+   ++ G+GKT +FVLPML
Sbjct: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQHQAIPLTIAGRDLLASSRQGSGKTLAFVLPML 64

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   + PR LIL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 65  HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            RG   ++ TPGR+ DH +   L +  +E LV+DEADRMLD+GF   ++ I +     R 
Sbjct: 125 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   ++  ++   L  PKRI +   S   + I +H ++  +  +  K ALL 
Sbjct: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDH--KEALLD 242

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L   +  +  IIF   + +   L   L +      A+ GN++Q  R  I+  F+    
Sbjct: 243 RILADAE-YRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVF 301

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++V +D+A+RGLDIP V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D + 
Sbjct: 302 KILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWES 361

Query: 357 IDAIEKLIEKKVDW-----LNGDLSSLNP 380
              +E  +++++ +     L G    L P
Sbjct: 362 FKRVEAFLQQEIQFEVLAGLEGKFKGLKP 390


>gi|157138330|ref|XP_001657248.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108869525|gb|EAT33750.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 1029

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 134/385 (34%), Positives = 217/385 (56%), Gaps = 15/385 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G+S K    +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 370 WAHCGVSKKEFDVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRH 429

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P ++I+ PTREL  Q+  + +K+ K+ NL    + GG     Q 
Sbjct: 430 ILDQPPLEDGDG----PISIIMTPTRELCMQIGKDIKKFAKSLNLRAVCVYGGTGISEQI 485

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM D+GF P +  I   
Sbjct: 486 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDLGFEPQVMRIIDN 545

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +   RQT++FSAT   +++ ++   L+ P  I++   S   + +E   V    +   K  
Sbjct: 546 IRPDRQTVMFSATFPRQMEALARRILKKPIEIQIGGRSVVCKDVEQHVVVL--EEDAKFF 603

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L +LL     + + I+F ++++N   L   L K  +   ++HG IDQ  R   + +FK+
Sbjct: 604 KLLELLGLYQELGSIIVFVDKQENADILLKDLMKASYPCLSLHGGIDQFDRDSTIIDFKQ 663

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++L++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  E 
Sbjct: 664 GRVKLLIATSVAARGLDVKQLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAWTFLTHEQ 723

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL 378
            ++   I + +E     +  DL SL
Sbjct: 724 GRYSGDIIRALELSGGTVPDDLRSL 748


>gi|68249479|ref|YP_248591.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 86-028NP]
 gi|68057678|gb|AAX87931.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 86-028NP]
          Length = 418

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 139/372 (37%), Positives = 214/372 (57%), Gaps = 10/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 14  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 73

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   +        PRTLIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 74  LLTHQDPNLEYPHPRTLILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQVI 133

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P    
Sbjct: 134 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 193

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           R T+LFSAT++ ++++++   + +P+ IE+     T   I E  F   Y     K ALL 
Sbjct: 194 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELF---YPSNQDKMALLL 250

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ +   +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G +
Sbjct: 251 TLMEDE-WPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDL 309

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   +
Sbjct: 310 DILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMN 369

Query: 357 IDAIEKLIEKKV 368
           +  IE+ I   +
Sbjct: 370 LPGIEEYIGHSI 381


>gi|306821248|ref|ZP_07454862.1| ATP-dependent RNA helicase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550760|gb|EFM38737.1| ATP-dependent RNA helicase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 517

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 213/363 (58%), Gaps = 9/363 (2%)

Query: 1   MDFADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M F +L  ++  ++ A+   G+   T IQ K +P+ + + DV G +QTGTGKT +F +P+
Sbjct: 1   MKFRELTDINENILKAIDAMGFEDMTQIQEKIVPVAVNKCDVIGQSQTGTGKTVAFGIPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  L+    +++   ++I+ PTRELA QV     +  +        L GG     Q K+L
Sbjct: 61  IQNLDFDEEKIQ---SVIMTPTRELAIQVTAEINRLLRFLPTKAVALYGGEEITRQIKRL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +++ TPGR++DH  R  +    I  +V+DEAD ML MGF+  I+ I   +P    
Sbjct: 118 KDRPAIIVATPGRLMDHIRRRTVKTEYINTVVLDEADEMLSMGFVEDIEEILEQMPNRSI 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM D ++K+SE FL++P  ++V   + T ++I+  ++    Q S K   L +LL
Sbjct: 178 TMLFSATMPDRIKKISEKFLKDPLFVKVERKTLTVDSIDQKYIQI--QESDKFDALCRLL 235

Query: 240 Q-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q  +   IIF   K+ V  L   L+ + + V  IHG++ Q  R K+L  FK+G I++
Sbjct: 236 DIYQPPL--CIIFGRTKRRVDELISGLQLRDYKVEGIHGDMKQDRREKVLERFKKGNIRI 293

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  V HV NFD+P   E Y+HRIGRTGRAG+ G +FT V  ++++ + 
Sbjct: 294 LVATDVAARGLDISGVTHVINFDLPQEIEGYVHRIGRTGRAGKSGVSFTFVHPKEMEFLQ 353

Query: 359 AIE 361
            IE
Sbjct: 354 EIE 356


>gi|191171034|ref|ZP_03032585.1| ATP-independent RNA helicase DbpA [Escherichia coli F11]
 gi|190908766|gb|EDV68354.1| ATP-independent RNA helicase DbpA [Escherichia coli F11]
          Length = 457

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 132/352 (37%), Positives = 208/352 (59%), Gaps = 8/352 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   A +   +  +L 
Sbjct: 22  GYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID---ASLFQTQAFVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF  Q   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT  + +  +S   
Sbjct: 139 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFAPASRQTLLFSATWPEAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     + ++FCN KK+ 
Sbjct: 199 QRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPSSCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            ++C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ K++W
Sbjct: 315 NFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNW 366


>gi|301755322|ref|XP_002913508.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like [Ailuropoda
           melanoleuca]
          Length = 654

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 220/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 182 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 242 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 301

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 302 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 361

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 362 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 420

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + S K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 421 -WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 479

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 480 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 539

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 540 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 571


>gi|254506018|ref|ZP_05118163.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
 gi|219551241|gb|EED28221.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
          Length = 454

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 139/388 (35%), Positives = 208/388 (53%), Gaps = 10/388 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + K T IQ K IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 12  LHFKDLGLDNRLLKNLKHLDFKKATEIQQKAIPVAIAGKDLLASSKTGSGKTLAFVLPML 71

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   + PR +IL PTRELA QV           +    L++GG  F  Q K L
Sbjct: 72  HKSLKSKAFSAKDPRAVILAPTRELAKQVYGELRTMLAGLSYDATLIVGGENFNDQVKAL 131

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            +    ++ TPGR+ DH     L +  +E LV+DEADRMLD+GF P ++ I +     R 
Sbjct: 132 RKYPKFIVATPGRLADHLEHRSLFLEGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRR 191

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+   E+  ++   L  PKRI V   +   + I   F         K A+L++
Sbjct: 192 QTLMFSATLDHAEVNDIAFEMLNAPKRIAVGVSNEEHKDITQKFYLC-DHLDHKEAILER 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +LQ  +  K  IIF   + +   L   L ++     A+ GN++Q  R  I+S F+    +
Sbjct: 251 VLQEAE-YKQIIIFTATRADTDRLTEKLNEKKLKAIALSGNLNQTQRNTIMSQFERAVFK 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLDI +V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D    
Sbjct: 310 ILVTTDVASRGLDIANVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSF 369

Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNP 380
             +E  +++ + +     L G    L P
Sbjct: 370 KRVEAYLQQDLSFSELEGLKGKFKGLKP 397


>gi|34498308|ref|NP_902523.1| ATP-dependent RNA helicase DbpA [Chromobacterium violaceum ATCC
           12472]
 gi|34104162|gb|AAQ60521.1| ATP-dependent RNA helicase dbpA [Chromobacterium violaceum ATCC
           12472]
          Length = 460

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 140/371 (37%), Positives = 210/371 (56%), Gaps = 12/371 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L   ++  +   GY + T IQ  ++P +L+  D+   A+TG+GKTA+F L +L+ 
Sbjct: 6   FSTLPLPAPLLSNLDSLGYHQMTAIQAASLPAILEGRDLIAQAKTGSGKTAAFGLGLLSS 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  +   N+ V  L GG P   Q   LE 
Sbjct: 66  INP---RWFGVQALVMCPTRELADQVAQEIRRLARAIDNIKVVTLTGGTPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R  L +  ++ LV+DEADRM+DMGFI  I  I    P TRQTL
Sbjct: 123 GAHIVVGTPGRLQDHLFRETLNLTGVKTLVLDEADRMIDMGFIEEIVGIVRACPRTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           LFSAT  ++++K S  FL+NP  ++V +    A+ IE  F  V    +      +L+ L 
Sbjct: 183 LFSATYPEDIRKASAQFLKNPVEVKVESLHK-ADHIEQWFYKVKPETRLETVSRILRHLR 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +     + + FCN ++    L   L++QGF    +HG+++QR R +IL  F   +  ++
Sbjct: 242 PT-----SALAFCNTRERCKELVRELQEQGFHALTLHGDLEQRERDQILLRFANKSATVL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++  V N DV +  E +IHRIGRTGR  +HG A TL    + K +  
Sbjct: 297 VATDVAARGLDIKELDVVINVDVTHDPEVHIHRIGRTGRGEQHGLALTLATDSEAKRLVQ 356

Query: 360 IEKLIEKKVDW 370
           IE   + ++ W
Sbjct: 357 IENYQQAELTW 367


>gi|320159302|ref|YP_004191680.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
 gi|319934614|gb|ADV89477.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
          Length = 412

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 210/368 (57%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS +++ A L   + KPT IQ   IP +L   D+  +A TG+GKT ++ LP+L
Sbjct: 1   MPFSTLSLSSELIHA-LPKDFKKPTDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +      LIL PTRELA QV++   + G++  L    L GG+  E Q + L 
Sbjct: 60  EKLGVNPEQ----EALILVPTRELATQVSEAINQVGQSIGLNAVCLCGGVDKEQQLQALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ T GR++D  N G L ++NI  LV+DEADR+LDMGF P +QNI   +   RQT
Sbjct: 116 TNPHILVATTGRLVDLANNG-LDLSNIHYLVLDEADRLLDMGFWPDVQNIAGQISSQRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT +DEL+  ++  +Q PK++  +  +ST + I         + SK  AL++  L 
Sbjct: 175 AMFSATFSDELKGKAKLLMQAPKQVAAHQENSTNQDIAETLYLVN-KGSKTKALIE--LI 231

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     ++F   K+N   L   L K G S  A+HG+  Q  R + L+ FK G  Q+++
Sbjct: 232 QKNAWTQALVFIGAKENADGLAKKLNKAGISTNALHGDKSQAEREEALAQFKSGQTQVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG  G A +LV   ++  + AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVALSLVCHGEMDALSAI 351

Query: 361 EKLIEKKV 368
             L ++++
Sbjct: 352 RHLTQREL 359


>gi|255713670|ref|XP_002553117.1| KLTH0D09328p [Lachancea thermotolerans]
 gi|238934497|emb|CAR22679.1| KLTH0D09328p [Lachancea thermotolerans]
          Length = 551

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 131/356 (36%), Positives = 198/356 (55%), Gaps = 11/356 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ KPT IQ +  P+ L   D+ G+A TG+GKT S+ LP +  
Sbjct: 113 FDEAGFPEYVLSEVKAEGFEKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVH 172

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 173 INAQPLLSPGDG----PIVLVLAPTRELAVQIQTECSKFGKSSRIRNTCVYGGVPRGHQI 228

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++L RGA+++I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 229 RELTRGAEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 288

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E+Q+++ ++L +P ++ V +    A       V   +   K+  LL+
Sbjct: 289 DRQTLMWSATWPKEVQQLARDYLHDPIQVNVGSLELAASHNIAQIVEVVSDMEKRDRLLK 348

Query: 237 QL-LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L   S+D     +IF + K+    +   L + G+   AIHG+  Q  R  +L  F+ G 
Sbjct: 349 HLETASEDKDSKILIFASTKRTCDEITRYLRQDGWPALAIHGDKAQNERDWVLQEFRTGN 408

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
             +MVA+D+AARG+D+  +  V N+D+P   E+Y+HRIGRTGRAG  G A +   +
Sbjct: 409 SPIMVATDVAARGIDVKGINFVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTE 464


>gi|238796726|ref|ZP_04640232.1| ATP-dependent RNA helicase srmB [Yersinia mollaretii ATCC 43969]
 gi|238719457|gb|EEQ11267.1| ATP-dependent RNA helicase srmB [Yersinia mollaretii ATCC 43969]
          Length = 441

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 137/354 (38%), Positives = 202/354 (57%), Gaps = 4/354 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP L 
Sbjct: 5   NFSELDLDERLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K+  L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I +   + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQT 184

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+  E +++  E  L  P  +E +      + I+  +         K ALL  LL
Sbjct: 185 LLFSATLEGEAIREFGERILNEPVELEADPSRRERKKIQQWYYRA-DDIEHKTALLVHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +  K+ IIF   ++ V  L   L + G +   + G + Q  R + +    +G + ++
Sbjct: 244 KQPEVQKS-IIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+A+RGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D
Sbjct: 303 VATDVASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHD 356


>gi|196012612|ref|XP_002116168.1| hypothetical protein TRIADDRAFT_30653 [Trichoplax adhaerens]
 gi|190581123|gb|EDV21201.1| hypothetical protein TRIADDRAFT_30653 [Trichoplax adhaerens]
          Length = 976

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 144/415 (34%), Positives = 228/415 (54%), Gaps = 7/415 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++A  GLS K++ ++    Y KPTP+Q + IP ++   DV GIA+TG+GKT +F+LPM  
Sbjct: 307 NWAQCGLSVKLLDSLKRVKYEKPTPVQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFR 366

Query: 62  -ILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            IL++   +    P  LI+ PTRELA Q+     ++ K   + V  + GG     Q  +L
Sbjct: 367 HILDQNALSPGDGPIGLIMTPTRELAIQITRECRRFTKAIGMHVVCVYGGTGISEQIAEL 426

Query: 120 ERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D    N G++  +  +  LV+DEADRM DMGF P +  I   +  
Sbjct: 427 KRGAEIVVCTPGRMIDMLLANNGRVTNLRRVTYLVLDEADRMFDMGFEPQVMKIVESIRP 486

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   L  P  IEV   S     IE   V    +   K   L 
Sbjct: 487 DRQTVMFSATFPRQMEALARKMLTKPIEIEVGGRSIVCSDIEQHVVIINEE--DKFLKLL 544

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + ++F  ++++   L   L K  +   ++HG +DQ  R   + ++K G I
Sbjct: 545 ELLGLYQPYGSVLVFVEKQESSDQLLKDLMKASYPCLSLHGGMDQSDRDSTIVDYKNGVI 604

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+ ++  V N+D PN  E+Y+HR GRTGRAG  G A+TL+ ++  K+
Sbjct: 605 KLLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRAGRTGRAGNKGYAYTLITEDQGKY 664

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
              I + +E   + +   L  L    ++   AQ  H  KN     K   FD  ++
Sbjct: 665 AGDIIRALELSKNSIPESLEKLWSDYKEELKAQGKHIAKNRGFSGKGFKFDEAER 719


>gi|307183175|gb|EFN70084.1| Probable ATP-dependent RNA helicase DDX17 [Camponotus floridanus]
          Length = 705

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 141/385 (36%), Positives = 213/385 (55%), Gaps = 15/385 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F +      V+  +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP  + 
Sbjct: 111 FEESNFPDYVMEEIKKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPATVH 170

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I  + R  R   P  LIL PTRELA Q+      +G +  +    + GG P   Q + LE
Sbjct: 171 INHQPRLNRGDGPIVLILAPTRELAQQIQTVARDFGSSSCIRNTCIFGGSPKGPQARDLE 230

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 231 RGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 290

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALL 235
           L++SAT   E+Q ++E+FL +  +I + + S  A     + IE C      Q  +K   L
Sbjct: 291 LMWSATWPKEVQALAEDFLTDYIQINIGSLSLAANHNIRQIIEIC------QEHEKEYKL 344

Query: 236 QQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            QLL+   T +    IIF   KK V ++  ++++ G+S  +IHG+  Q  R  +LS F+ 
Sbjct: 345 SQLLREIGTERGSKMIIFVETKKKVDDITKTIKRDGWSAISIHGDKSQPERDYVLSEFRN 404

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+D+AARGLD+ DV +V NFD PN +E+YIHRIGRTGR    G A+      +
Sbjct: 405 GKTMILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNN 464

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL 378
            +    +  ++E+    +N  L+ +
Sbjct: 465 ARQAKELIAVLEEAGQTINPQLADI 489


>gi|322706702|gb|EFY98282.1| ATP-dependent RNA helicase dbp10 [Metarhizium anisopliae ARSEF 23]
          Length = 892

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 134/385 (34%), Positives = 214/385 (55%), Gaps = 32/385 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPLVL R DV G+A+TG+GKT +FV+PM+  
Sbjct: 85  FQAMGLNSNLLKAIARKGFSVPTPIQRKTIPLVLDRKDVVGMARTGSGKTGAFVIPMIEK 144

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     R    R LIL P+RELA Q     +++ +  +L   LL+GG   E Q   +   
Sbjct: 145 LRAHSGRF-GSRALILSPSRELAIQTLKVVKEFARGTDLKAILLVGGDSLEEQFGYMAAN 203

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 204 PDIVIATPGRFLHLKVEMSLDLSSIKYVVFDEADRLFEMGFATQLTEILHALPPSRQTLL 263

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
           FSAT+   L + +   LQ+P  + ++  +  +  +E  F +      K+ ALL  L    
Sbjct: 264 FSATLPASLVEFARAGLQDPSLVRLDAETKVSPDLESAFFSVKGA-EKEGALLHILHDVI 322

Query: 239 --------LQSQDTMK------------------NGIIFCNQKKNVVNLCHSLEKQGFSV 272
                   +  QD+ K                  + IIF   K +V  L + L++ GF+V
Sbjct: 323 KMPMGTPEIAKQDSEKASKKRKRGESGSGKPTEHSTIIFTATKHHVEYLANVLQRAGFAV 382

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
             ++G++DQ +R   + +F+ G   ++V +D+AARG+DIP + +V N+D P++ + ++HR
Sbjct: 383 SHVYGSLDQTARRNQVEDFRRGRTNILVVTDVAARGIDIPVLANVINYDFPSQPKIFVHR 442

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHI 357
           +GRT RAG+ G +++LV   D  ++
Sbjct: 443 VGRTARAGQRGWSYSLVRDSDAPYL 467


>gi|302891875|ref|XP_003044819.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256725744|gb|EEU39106.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 551

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 138 FDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPSIVH 197

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+    +K+G++  +    + GG+P   Q 
Sbjct: 198 INAQPLLAPGDG----PIVLVLAPTRELAVQIKQEIDKFGRSSRIRNTCVYGGVPKGPQI 253

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 254 RDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 313

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E++ ++ +FLQ+  ++ + +    A       V       K+  +++
Sbjct: 314 DRQTLMWSATWPKEVRALATDFLQDFIQVNIGSMDLAANHRITQIVEVVTDMEKRDRMIK 373

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L +  +  +N I IF   K+   ++   L + G+   +IHG+  Q  R  +L  FK   
Sbjct: 374 HLEKVMENKENKILIFVGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKSAK 433

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+A+RG+D+ ++ HV N+D PN +E+YIHRIGRTGRAG  G A T    ++ K
Sbjct: 434 SPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNQK 493

Query: 356 HI-DAIEKLIEKK 367
              D +  L E K
Sbjct: 494 QARDLVNVLQEAK 506


>gi|294875674|ref|XP_002767430.1| ATP-dependent RNA helicase dbp10, putative [Perkinsus marinus ATCC
           50983]
 gi|239868997|gb|EER00148.1| ATP-dependent RNA helicase dbp10, putative [Perkinsus marinus ATCC
           50983]
          Length = 952

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 140/387 (36%), Positives = 215/387 (55%), Gaps = 30/387 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  +  A+   GY +PTPIQ K IP++L   DV  +A+TG+GKTA+FV+PM+  
Sbjct: 25  FQTMGLSDPLFKAIQKMGYNQPTPIQRKAIPVILGGSDVVAMARTGSGKTAAFVIPMIQT 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L KG + V   R +IL PTRELA Q        GK  +L + L++GG   E+Q  +L   
Sbjct: 85  L-KGHSEVVGARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVGGHSMESQFDRLSSN 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLICTPGR++ H     L +  ++ +V DEADR+ +MGF   +Q I    P +RQ LL
Sbjct: 144 PDVLICTPGRLVHHMVEADLSLQRVQYIVFDEADRLFEMGFSDDMQTILKATPPSRQCLL 203

Query: 183 FSATMTDELQKVSENFLQNPKR--IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           FSAT+  +L + S   L++     I ++   + ++T++  F+ T A  SK  AL+  LL+
Sbjct: 204 FSATLPSQLTQFSRAGLRSDSTEFIRLDVEHTISDTLDLWFLYTTAD-SKPAALI-SLLR 261

Query: 241 SQDTMKNG-----------------------IIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
              +M N                        I+F   + NV      L + G +   I+G
Sbjct: 262 KLQSMGNANADSSTAVVAAGKGGKKARSPKTIVFVATRHNVEFFASLLTQVGITNAPIYG 321

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++DQ  R   LS F+ G   +++ +D+AARG+DIP + +V N+D P+ ++ ++HR GRT 
Sbjct: 322 SMDQTQRTSSLSKFRSGKASVLLVTDVAARGIDIPQLDYVINYDFPSSSKLFVHRCGRTA 381

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RAG  G   +LV  +D+ +  A+E ++
Sbjct: 382 RAGAKGLCASLVTHDDMPY--AVELML 406


>gi|197692141|dbj|BAG70034.1| ATP-dependent RNA helicase DDX3X [Homo sapiens]
 gi|197692387|dbj|BAG70157.1| ATP-dependent RNA helicase DDX3X [Homo sapiens]
          Length = 662

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 220/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 182 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 242 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 301

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 302 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 361

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 362 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 420

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + S K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 421 -WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 479

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 480 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 539

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 540 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 571


>gi|195326619|ref|XP_002030023.1| GM24798 [Drosophila sechellia]
 gi|194118966|gb|EDW41009.1| GM24798 [Drosophila sechellia]
          Length = 786

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 133/355 (37%), Positives = 205/355 (57%), Gaps = 7/355 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F   G   +++ AV  A Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 268 FGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMH 327

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + +K       P  LIL PTREL+ Q+ +  +K+GK YNL V    GG     Q+K LE
Sbjct: 328 VMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALE 387

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA++++ TPGR++D        +  +  LV+DEADRM  MGF P +++I + V   RQ 
Sbjct: 388 QGAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQC 447

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT    +++++ + L +P RI     +   + I            K   LL  L++
Sbjct: 448 LMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLVK 507

Query: 241 --SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S+ ++   +IF  +K +   + ++L  + ++   +HG++DQ  R K+++ FK     +
Sbjct: 508 FLSEGSV---LIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDI 564

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +VA+D+AARGLDIP + +V N+D     E + HRIGRTGRAG  G AFTLV  +D
Sbjct: 565 LVATDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAFTLVTDKD 619


>gi|158530232|gb|ABW71831.1| putative RNA helicase [Phytophthora infestans]
          Length = 544

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 134/356 (37%), Positives = 197/356 (55%), Gaps = 15/356 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +      V+  V+  G+ KPTPIQ +  P+ L   D+ GI+ TG+GKT +F+LP +
Sbjct: 141 LSFEEASFPEYVLEEVVRLGFDKPTPIQCQGWPMALSGRDMVGISATGSGKTLAFLLPAI 200

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   L+ G      P  L++ PTRELA Q+     K+G +  +    + GG+P   
Sbjct: 201 VHINAQPYLQPGDG----PIVLMIAPTRELAVQIQAECNKFGASSKIKNTCVYGGVPKGG 256

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L RG ++ ICTPGR++D  + GK  +  +  LV+DEADRMLDMGF P ++ I S +
Sbjct: 257 QIADLRRGVEICICTPGRMIDMLSMGKTNLRRVTYLVLDEADRMLDMGFEPQLRKIVSQI 316

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTL++SAT   E+  ++ +FL +  ++ V +   TA       V     + K  +L
Sbjct: 317 RPDRQTLMWSATWPKEIVALANDFLTDFIQVTVGSLDLTANKRIKQIVEVMDDHQKYSSL 376

Query: 235 LQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
              L   +D  + G  IIFC  K+    L  +L    +   AIHGN  Q  R  +L  FK
Sbjct: 377 QDHL---RDIYEGGRIIIFCETKRGADELSRNLRNTRYICKAIHGNKSQEERDYVLREFK 433

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +G  Q++VA+D+A+RGLDI D+ +V NFD+P   E+YIHRIGRT RAG  G + + 
Sbjct: 434 DGRTQILVATDVASRGLDIKDIRYVVNFDMPKNIEDYIHRIGRTARAGNKGTSISF 489


>gi|300794325|ref|NP_001179891.1| ATP-dependent RNA helicase DDX3X [Bos taurus]
 gi|297493243|ref|XP_002700250.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Bos
           taurus]
 gi|296470612|gb|DAA12727.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Bos taurus]
          Length = 661

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 220/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 181 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 240

Query: 63  L-------------EKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
           +             E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 241 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 300

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 301 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 360

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 361 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 419

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + S K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 420 -WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 478

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 479 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 538

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 539 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 570


>gi|62087546|dbj|BAD92220.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 variant [Homo
           sapiens]
          Length = 674

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 220/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 194 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 253

Query: 63  L-------------EKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
           +             E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 254 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 313

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 314 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 373

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 374 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 432

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + S K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 433 -WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 491

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 492 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 551

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 552 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 583


>gi|84393955|ref|ZP_00992695.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus 12B01]
 gi|84375399|gb|EAP92306.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus 12B01]
          Length = 421

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 213/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA+L L+ +++ A+ + GY +PT IQ + IP  L   DV   A TGTGKTASFVLP L  
Sbjct: 5   FAELDLNQELLKAIDEMGYERPTQIQAEAIPQALDGRDVLASAPTGTGKTASFVLPALQY 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +    R LIL PTRELA Q+ +   +  K  +L +  + GG+ ++     L  
Sbjct: 65  LLDFPRKKSGPARMLILTPTRELAMQITEQARELAKYTSLNIFTITGGVMYQEHADILST 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR++++    +     IE LV+DEADRMLDMGF P +  +++   + +QTL
Sbjct: 125 TQDIVVATPGRLMEYIEGERFDCRAIEWLVLDEADRMLDMGFGPVVDRLSAECRWRKQTL 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLL 239
           LFSAT+  + ++  +E+ L+NP  I+  +     + I   +  A  A++  K  +L+ ++
Sbjct: 185 LFSATLEGKGIEGFTEDLLKNPAEIDAKSSLRERKKITQWYHRADSAKH--KLNILKHII 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  IIF   +  +  L   LE        I G + Q  R   +S F++G+I ++
Sbjct: 243 TEQ--AERSIIFLKTRDRLGELRAQLESAQIPCVWIQGEMPQDRRNNAISRFRDGSINVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A +++   D   I+ 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAVSIIEAHDQLMIER 360

Query: 360 IEKLIEKKV 368
           + +  E  +
Sbjct: 361 VARYTEDAI 369


>gi|296235289|ref|XP_002762845.1| PREDICTED: ATP-dependent RNA helicase DDX3X isoform 1 [Callithrix
           jacchus]
 gi|297709768|ref|XP_002831596.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 1 [Pongo
           abelii]
          Length = 660

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 220/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 182 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 242 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 301

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 302 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 361

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 362 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 420

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + S K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 421 -WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 479

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 480 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 539

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 540 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 571


>gi|312194633|ref|YP_004014694.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
 gi|311225969|gb|ADP78824.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
          Length = 543

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 137/391 (35%), Positives = 208/391 (53%), Gaps = 20/391 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTLI 77
           AG V P  IQ  T+PL L   D+ G A+TGTGKT  F +P++  +L         P+ LI
Sbjct: 7   AGIVHPFAIQELTLPLALAGTDIIGQARTGTGKTLGFGIPVIQKVLGPDEGADGRPQALI 66

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           + PTREL  QV ++ ++ GK   + V  + GG  +E Q   L+ G DV++ TPGR+LD  
Sbjct: 67  VVPTRELCVQVTNDLDRAGKGRRIRVLSVYGGRAYEPQTSALKSGVDVVVGTPGRLLDLA 126

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
            +  L + N+  LV+DEAD MLD+GF+P ++ I +L+P  RQT+LFSATM   +  ++  
Sbjct: 127 RQRTLNLGNVATLVLDEADEMLDLGFLPDVERIVALLPAGRQTMLFSATMPGPVIALARR 186

Query: 198 FLQNPKRIEVNTPS---STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           F+  P  +    P    +   T +H F    A    K  +L ++LQ++    + I+F   
Sbjct: 187 FMIRPVHVTAEQPDEGRTVPTTSQHVF---RAHAMDKMEVLSRVLQAEGRSLS-IVFVRT 242

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           ++    +   L ++GF+   +HG++ Q  R + L  F+ G + ++VA+D+AARG+D+  V
Sbjct: 243 RRTADKVAEDLARRGFAAAPVHGDLGQGQREQALRAFRAGKVDVLVATDVAARGIDVGGV 302

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
            HV N+  P     Y+HRIGRTGRAG  G A T V  +D+     + + +    D     
Sbjct: 303 THVINYQCPEDESVYLHRIGRTGRAGGSGVAVTFVDWDDLARWQLVNRALALPFD----- 357

Query: 375 LSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
                 PLE    + H        IP  STG
Sbjct: 358 -----EPLETYSTSPHLFEALG--IPSGSTG 381


>gi|150864373|ref|XP_001383156.2| ATP-dependent RNA helicase of DEAD box family [Scheffersomyces
           stipitis CBS 6054]
 gi|149385629|gb|ABN65127.2| ATP-dependent RNA helicase of DEAD box family [Scheffersomyces
           stipitis CBS 6054]
          Length = 616

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 136/341 (39%), Positives = 198/341 (58%), Gaps = 19/341 (5%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT---------ILEKGRARVR 71
           + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+         I E   A   
Sbjct: 157 FTKPTPVQKYSVPIVAGGRDLMACAQTGSGKTGGFLFPVLSESYINGPAPIAESTGAFSS 216

Query: 72  M---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
               P  L++ PTREL +Q+ D  +K+     +  A++ GG     Q + L++G D+L+ 
Sbjct: 217 HKVHPTILVMAPTRELVSQIYDEAKKFAYRSWVKPAVVYGGADIGQQIRNLDKGCDLLVA 276

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFS 184
           TPGR+ D   RG++ + NI+ LV+DEADRMLDMGF P I++I           RQTL+FS
Sbjct: 277 TPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRHIVQECDMPDVQDRQTLMFS 336

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT   ++Q ++ +FL++   + V    ST+E I    +  Y +  +K ++L  LL + D 
Sbjct: 337 ATFPTDIQMLARDFLKDYIFLSVGRVGSTSENITQKIL--YVEDEEKKSVLLDLLSAGDA 394

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
               IIF   K+   NL   L  QGF   AIHG+  Q  R K L+ FK G   ++VA+ +
Sbjct: 395 GLT-IIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGAAPILVATAV 453

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A
Sbjct: 454 AARGLDIPNVAHVINYDLPSDIDDYVHRIGRTGRAGNVGIA 494


>gi|238798166|ref|ZP_04641653.1| ATP-independent RNA helicase dbpA [Yersinia mollaretii ATCC 43969]
 gi|238718020|gb|EEQ09849.1| ATP-independent RNA helicase dbpA [Yersinia mollaretii ATCC 43969]
          Length = 460

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 137/369 (37%), Positives = 215/369 (58%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L  
Sbjct: 6   FSTLTLPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLDK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           +  G     + + L+L PTRELA QV+    +  +   N+ +  L GG P   Q   L  
Sbjct: 66  IAVGEF---VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLIH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI +H  +  L++++++ILV+DEADRMLDMGF   I ++ +  P  RQTL
Sbjct: 123 APHIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAINDVIAYTPPQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S    + P  +EV      A  IE  F  T  +  K+  LL  +L S
Sbjct: 183 LFSATYPVGIEQISARVQREPVNVEVED-GDEAPAIEQVFFETTRE--KRLPLLISVL-S 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + ++FCN KK+  ++  +LE +G SV A+HG+++QR R ++L  F   + +++VA
Sbjct: 239 HYQPASAVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V NF++    E ++HRIGRTGRAG  G A +L   +++    AIE
Sbjct: 299 TDVAARGLDIKDLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHAIE 358

Query: 362 KLIEKKVDW 370
             ++ KV W
Sbjct: 359 DYLQIKVKW 367


>gi|148245005|ref|YP_001219699.1| ATP-dependent RNA helicase DbpA [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326832|dbj|BAF61975.1| ATP-dependent RNA helicase DbpA [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 462

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 137/361 (37%), Positives = 213/361 (59%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ L L P ++  +   GY   TPIQ  ++P++L   DV G  +TG+GKT +F L +L 
Sbjct: 5   DFSSLKLHPNLLKNLTILGYDLMTPIQKLSLPVILSGKDVIGQGKTGSGKTVAFGLGLLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L+    ++   ++++L PTRELA QVA   +K  +  N + V +L GG+ F  Q   L 
Sbjct: 65  KLD---VKLFKLQSIVLCPTRELANQVAVEIQKLARVINNIKVVVLCGGMSFGLQIDSLR 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  V++ TPGRI +H  +G L ++ I  LV+DEADRMLDMGF   + NI   +P  RQT
Sbjct: 122 HGVHVVVGTPGRIEEHLRKGTLKLSYINTLVLDEADRMLDMGFQESVDNIIETMPTNRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D +  +++  +++P  ++V   +  + TI+  F        +  AL  +LL 
Sbjct: 182 LLFSATCLDTITNITQRVMRSPIMVKVPLINERS-TIKQYFYKINTDNERMMAL--RLLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ ++FCN K++   + + L   GF   AIHG++DQR R + L  F   ++ ++V
Sbjct: 239 AKYKPESSLVFCNTKRDAQKVANELVYYGFYALAIHGDLDQRERDQALIRFSNKSVSILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NFD+ +  + +IHRIGRTGRAG  G A TL +  +   +D +
Sbjct: 299 ATDVAARGLDIDSLDMVINFDIAHDDQVHIHRIGRTGRAGHFGIACTLYSNRETYKLDTL 358

Query: 361 E 361
           +
Sbjct: 359 K 359


>gi|145638288|ref|ZP_01793898.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
 gi|145272617|gb|EDK12524.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
          Length = 415

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 139/372 (37%), Positives = 214/372 (57%), Gaps = 10/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   +        PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 71  LLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQVI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P    
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           R T+LFSAT++ ++++++   + +P+ IE+     T   I E  F   Y     K ALL 
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELF---YPSNQDKMALLL 247

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ +   +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G +
Sbjct: 248 TLMEDE-WPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDL 306

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   +
Sbjct: 307 DILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMN 366

Query: 357 IDAIEKLIEKKV 368
           + AIE+ I   +
Sbjct: 367 LPAIEEYIGHSI 378


>gi|45361237|ref|NP_989196.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Xenopus
           (Silurana) tropicalis]
 gi|38649000|gb|AAH63374.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Xenopus
           (Silurana) tropicalis]
          Length = 699

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 220/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ +   ++  +  + Y +PTP+Q   IP+++++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 224 FQDVTMGEIIMGNIQLSRYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPILSQ 283

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 284 IYADGPGDAMKHLKENGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVY 343

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++    LV+DEADRMLDMGF P I
Sbjct: 344 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCNYLVLDEADRMLDMGFEPQI 403

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   RQT++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 404 RRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVV- 462

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + +   K + L  LL +       ++F   KK    L   L  +G++  +IHG+  QR 
Sbjct: 463 -WVEEMDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRD 521

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 522 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 581

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   +++I    D ++ L+E K +   WL
Sbjct: 582 LATSFFNEKNINITKDLLDLLVEAKQEVPSWL 613


>gi|164657065|ref|XP_001729659.1| hypothetical protein MGL_3203 [Malassezia globosa CBS 7966]
 gi|159103552|gb|EDP42445.1| hypothetical protein MGL_3203 [Malassezia globosa CBS 7966]
          Length = 560

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 133/361 (36%), Positives = 202/361 (55%), Gaps = 14/361 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + G    ++  +   G+ +P+ IQ +  PL L   D+  IA+TG+GKT  F LP +  
Sbjct: 137 FEETGYPDYIMREINKLGFTEPSAIQSQAWPLALSGRDLVAIAETGSGKTIGFALPSILH 196

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + K +A ++    P  LIL PTRELA Q+ +  +++G    +    + GG+P   Q + L
Sbjct: 197 I-KAQAPLQYGDGPIALILAPTRELAVQIQNECQRFGSACRVRTTSVYGGVPKGQQIRSL 255

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA+++I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 256 QRGAEIVIATPGRLIDMMEIGKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVEQIRPDRQ 315

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCAL 234
           TL+FSAT   E+Q+++ +FL +  ++ + +    A     + IE C      ++ K+  L
Sbjct: 316 TLMFSATWPKEVQRMASDFLNDYVQVNIGSMELAANHNVKQVIEVC-----TEFDKRGRL 370

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           ++ L          IIF   K+   +L   L + G+   AIHG+  Q  R  +L  FK G
Sbjct: 371 IKHLEHISQENGKVIIFTGTKRAADDLTKFLRQDGWPGLAIHGDKQQDERDWVLREFKSG 430

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +MVA+ +A+RGLD+ D+ +V N D P   E+YIH+IGRTGRAGR G A T    E+ 
Sbjct: 431 NSPIMVATAVASRGLDVKDISYVINSDFPTNTEDYIHQIGRTGRAGRKGVAITFFTSENS 490

Query: 355 K 355
           K
Sbjct: 491 K 491


>gi|170782265|ref|YP_001710598.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169156834|emb|CAQ02001.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 520

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 130/365 (35%), Positives = 207/365 (56%), Gaps = 3/365 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   +V A+ D G ++P PIQ +TIPL L   D+ G A+TGTGKT  F LP++
Sbjct: 1   MTFTELNIDEDMVQALADHGILEPFPIQEQTIPLALSGQDIIGQAKTGTGKTFGFGLPLI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  G       + L++ PTRELA QV ++ +   K+   TV  + GG  +E Q ++L+
Sbjct: 61  QRL--GLTPEPGVQALVVVPTRELAVQVTEDLQIATKHRATTVVSIYGGKAYEGQIEQLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   +  L +  +  +V+DEAD+MLD+GF+  I+ + +  P  R T
Sbjct: 119 AGAQIVVGTPGRLLDLVGQRLLSLKYVREMVLDEADKMLDLGFLSDIEKLFAQTPAVRHT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +  ++  F+  P  I    P           +   A    K  ++ ++LQ
Sbjct: 179 MLFSATMPGPIVALARRFMTKPIHIRATDPDEGLMQANIRHLVYRAHNMDKDEVIGRILQ 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   K  +IF   K+    L   L  +GF+  A+HG+++Q  R + ++ FK G   +++
Sbjct: 239 AEGRGKT-VIFTRTKRAAARLVEELNDRGFNAAAVHGDLNQEQRERAMAAFKAGKKDILI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV HV N  +P   + Y+HR+GRTGRAG+ G A T V  +D+     I
Sbjct: 298 ATDVAARGIDVLDVTHVINHTIPEDDKAYLHRVGRTGRAGKTGIAVTFVDWDDLHKWALI 357

Query: 361 EKLIE 365
            + +E
Sbjct: 358 NRALE 362


>gi|256421635|ref|YP_003122288.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256036543|gb|ACU60087.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 446

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 136/372 (36%), Positives = 206/372 (55%), Gaps = 4/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  ++ A+ D GY  PT IQ K   +V+   DVCGIAQTGTGKT +++LP L
Sbjct: 1   MTFDDLNLSRPLLNALEDLGYKTPTVIQQKVFSVVMSGQDVCGIAQTGTGKTFAYLLPCL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +  + R   P+ LIL PTREL  QV D  ++     ++ +A   GG+    Q +   
Sbjct: 61  RQFKFSKER--FPQLLILVPTRELVVQVVDAVKQLTPYMSVEIAGFYGGVNMNPQMETAS 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ TPGR++D    G L +  I+ +VIDE D ML++GF P ++ I  L+P  RQ 
Sbjct: 119 GKLDVVVATPGRLVDIVLSGTLKLKAIKRIVIDEMDEMLNLGFRPQVERILDLLPVRRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+T++++K+ +     P  +E     +  + I          +  K  LL+ LL 
Sbjct: 179 LLFSATITEDVEKLIQTHFNAPATVEAAPAGTPLKNISQS-AYDVPNFYTKVNLLELLLA 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLE-KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +M   ++F   K+   +L   LE K       IH N  Q  R   ++ FK+G+ + +
Sbjct: 238 KDSSMNKVLVFVATKEMANDLYEQLETKFPEQAGVIHSNKAQNHRFNTVNKFKDGSYRFI 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+ ARGLDI +V HV +FD P   E+Y+HRIGRTGRA + G +      ++ ++ D 
Sbjct: 298 IATDIIARGLDIAEVSHVISFDTPEVPESYMHRIGRTGRADKEGHSILFTKPQEKENKDN 357

Query: 360 IEKLIEKKVDWL 371
           IE+L+  ++  L
Sbjct: 358 IEELMNYQIPVL 369


>gi|74006722|ref|XP_861268.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 3 [Canis familiaris]
 gi|74006724|ref|XP_861300.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 4 [Canis familiaris]
 gi|74006730|ref|XP_861379.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 6 [Canis familiaris]
 gi|74006732|ref|XP_538003.2| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 1 [Canis familiaris]
          Length = 662

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 220/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 182 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 242 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 301

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 302 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 361

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 362 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 420

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + S K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 421 -WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 479

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 480 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 539

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 540 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 571


>gi|73969107|ref|XP_531736.2| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 1 [Canis
           familiaris]
          Length = 664

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 142/395 (35%), Positives = 217/395 (54%), Gaps = 34/395 (8%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 100 PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 159

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 160 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT----------- 171
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I            
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRVCKTDDT 275

Query: 172 -SLVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVA 223
            SL PF   RQTL++SAT   E+++++E+FL++  +I V     +A     + ++ C  +
Sbjct: 276 LSLFPFPPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMES 335

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
              +  K   L+++++  ++     IIF   K+   +L   + + G+    IHG+  Q  
Sbjct: 336 --EKDHKLIQLMEEIMAEKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 391

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R  +L+ F+ G   +++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G
Sbjct: 392 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 451

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            A+T     ++K    + K++E+    +N  L  L
Sbjct: 452 TAYTFFTPGNLKQARELIKVLEEANQAINPKLMQL 486


>gi|87196351|ref|NP_001347.3| ATP-dependent RNA helicase DDX3X isoform 1 [Homo sapiens]
 gi|3023628|sp|O00571|DDX3X_HUMAN RecName: Full=ATP-dependent RNA helicase DDX3X; AltName: Full=DEAD
           box protein 3, X-chromosomal; AltName: Full=DEAD box, X
           isoform; AltName: Full=Helicase-like protein 2;
           Short=HLP2
 gi|2148924|gb|AAB95637.1| helicase like protein 2 [Homo sapiens]
 gi|3523150|gb|AAC34298.1| DEAD box RNA helicase DDX3 [Homo sapiens]
 gi|15080078|gb|AAH11819.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Homo sapiens]
 gi|57209229|emb|CAI41416.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Homo sapiens]
 gi|119579806|gb|EAW59402.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|119579807|gb|EAW59403.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|119579808|gb|EAW59404.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|119579809|gb|EAW59405.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|158255742|dbj|BAF83842.1| unnamed protein product [Homo sapiens]
 gi|168277370|dbj|BAG10663.1| ATP-dependent RNA helicase DDX3X [synthetic construct]
          Length = 662

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 220/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 182 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 242 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 301

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 302 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 361

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 362 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 420

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + S K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 421 -WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 479

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 480 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 539

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 540 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 571


>gi|301171467|ref|NP_001180345.1| ATP-dependent RNA helicase DDX3X isoform 2 [Homo sapiens]
          Length = 661

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 220/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 182 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 242 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 301

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 302 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 361

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 362 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 420

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + S K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 421 -WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 479

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 480 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 539

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 540 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 571


>gi|29612573|gb|AAH49396.1| Ddx49-A-prov protein [Xenopus laevis]
          Length = 482

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 157/416 (37%), Positives = 226/416 (54%), Gaps = 17/416 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGLS  ++      G +KP+P+Q   IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 7   FSSLGLSSWLIDQCSQLGILKPSPVQENCIPPILEGRDCMGCAKTGSGKTAAFVLPILQK 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     L+L PTRELA Q+A+ F   GK   L   ++IGG+   AQ  +L R 
Sbjct: 67  LSEDPFGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIIGGMDMVAQALELSRK 123

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178
             ++I TPGR+ DH        +  I  LV+DEADR+L+ G   F   +Q I   VP  R
Sbjct: 124 PHIVIATPGRLADHIRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTQDLQVILEAVPAQR 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+TD LQ++    +  P   E  +   T E ++  ++    +   K A L  L
Sbjct: 184 QTLLFSATLTDTLQELKTVAMNKPFFWESTSEVRTVEQLDQRYILVPEKV--KDAYLVYL 241

Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q  QD  ++   +IF N  K    L   L +  F   A+H  + Q+ R   L+ FK   
Sbjct: 242 IQKFQDEHEDWSIMIFTNTCKTCQILNMMLREFSFPSVALHSMMKQKQRFAALAKFKSSV 301

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++A+D+AARGLDIP V  V N + P   + YIHR+GRT RAGR+G A TLV + DI 
Sbjct: 302 FKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGMAITLVTQYDIH 361

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            + AIE  I  K++    +       + KI + Q N AR+   I  + T FD +K+
Sbjct: 362 LVHAIEGQINMKLE----EFKVKENEVLKI-LTQVNVARRECEIKLECTDFDEKKE 412


>gi|308502005|ref|XP_003113187.1| hypothetical protein CRE_25313 [Caenorhabditis remanei]
 gi|308265488|gb|EFP09441.1| hypothetical protein CRE_25313 [Caenorhabditis remanei]
          Length = 506

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 139/424 (32%), Positives = 233/424 (54%), Gaps = 21/424 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA+LG+S  +  A    G++KP+ IQ   +P  LQ  DV G+A+TG+GKT +F +P+L +
Sbjct: 56  FAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQS 115

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  +A       L+L PTRELA Q+   FE  G    L  A+++GG+   AQ   L R
Sbjct: 116 LLDHPQAFF----CLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALAR 171

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR++DH    K   +  ++ L++DEADR+L+M F   +  I  ++P  R+T
Sbjct: 172 RPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPKERRT 231

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+    L++P R+ V+T   T + ++  ++    +Y K+  L+   L 
Sbjct: 232 YLFSATMTKKVSKLERASLRDPARVSVSTRYKTVDNLKQHYIFIPNKY-KETYLV--YLL 288

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ------------RSRMKIL 288
           ++    + I+FC      + +   L + G     +HG + Q              R+  L
Sbjct: 289 NEHAGNSAIVFCATCATAMQIAVMLRQLGMQAVPLHGQMSQVRFERPLQVGSLEKRLGSL 348

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           + FK     ++V +D+AARGLDIP V  V N+D+P+++++Y+HR+GRT RAGR G A T+
Sbjct: 349 NKFKSKARDILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGLAITV 408

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           V + D++    IE  + KK+D      + +   +E+   A  N   +   + +K     +
Sbjct: 409 VTQYDVEGYQKIEANLGKKLDEYKCVENEVMVLVERTQEALENAKVEMKEMDEKRKSGKK 468

Query: 409 RKKN 412
           R++N
Sbjct: 469 RRQN 472


>gi|281344701|gb|EFB20285.1| hypothetical protein PANDA_020280 [Ailuropoda melanoleuca]
          Length = 645

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 133/362 (36%), Positives = 214/362 (59%), Gaps = 9/362 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK---G 66
           P+++ ++  AG+ KPTPIQ +  P++LQ  D+ G+AQTGTGKT S+++P    L      
Sbjct: 250 PELIESIKRAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHLNNQPIS 309

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R     P  L+L PTRELA QV     KY     L    + GG   E Q + + +G D++
Sbjct: 310 REERNGPGMLVLTPTRELALQVEAECSKYSYK-GLKSICIFGGRNREQQIRDITKGIDII 368

Query: 127 ICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           I TPGR L++      + + +I  LV+DEAD+MLD+GF   I  I   V   RQT++ SA
Sbjct: 369 IATPGR-LNYLQMNNFVNLQSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTVMISA 427

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T +D + ++ +++L+ P  + V T    A  T+    + T  +  +K +LLQ+ LQ++  
Sbjct: 428 TWSDTIHQLGQSYLKEPMIVYVGTLDLVAVNTVTQNVIITTQE--EKRSLLQEFLQNRSP 485

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
               I+F  ++    +L   L  QG +V ++HG+ DQ  R + L +F+ G +++++A+DL
Sbjct: 486 QDKVIVFVRRRLVADDLSSDLSIQGITVQSLHGDRDQHDRERALEDFRSGKVKVLIATDL 545

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           A+RGLD+ D+ HV+N+D P   E Y+HR+GRTGRAG+ G + TL+ + D K    + K++
Sbjct: 546 ASRGLDVNDITHVYNYDFPRNIEEYVHRVGRTGRAGKTGLSITLMTQNDWKIATELIKIL 605

Query: 365 EK 366
           ++
Sbjct: 606 KR 607


>gi|260220807|emb|CBA28741.1| hypothetical protein Csp_A08660 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 652

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 147/409 (35%), Positives = 227/409 (55%), Gaps = 54/409 (13%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL---------QRHDVCGIAQTGTGKTA 53
           F +LGL+P +V A  D GY +PT +Q K IPL +         +  D+   +QTG+GKTA
Sbjct: 60  FVELGLAPALVQACKDLGYTQPTTVQQKAIPLAMAGVGSEKAGKFVDLMVSSQTGSGKTA 119

Query: 54  SFVLPMLTIL-----------------------EKG-----RARVR-----------MPR 74
           +F+LP+L  L                        KG     RA+ +            P 
Sbjct: 120 AFLLPVLHTLLTQQAEAEEAERAEYEQACADAAAKGEPAPKRAKRKDPTNPRNFKAPTPG 179

Query: 75  TLILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
            LI+ PTRELA QVA D  +       L VA ++GG+P++ Q  KL+  A++++ TPGR+
Sbjct: 180 ALIVCPTRELAQQVAHDAIDLVQHCRGLRVANIVGGMPYQLQIAKLQ-NANLVVATPGRL 238

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193
           LD     ++ ++ ++ LV+DEADRMLD+GF   +  I  L    +QT++FSAT    +Q+
Sbjct: 239 LDLQRSMQIKLDQVQFLVVDEADRMLDLGFADDLAEINQLTIDRKQTMMFSATFAPRIQQ 298

Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           ++   ++ P+R+ +++P      I+   F A  AQ+ +K  LL   L+   T+   ++F 
Sbjct: 299 LAARVMREPQRVTIDSPQEKHANIKQVLFWADNAQHKRK--LLDHWLRDT-TINQAVVFA 355

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
           + +     L + L++ GFS  A+HG + Q  R + L   ++G +Q++VA+D+AARG+D+P
Sbjct: 356 STQIECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVAARGIDVP 415

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
            + HVFNF +P +AE+Y HRIGRTGRAGR G A T     D + I  IE
Sbjct: 416 TITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIE 464


>gi|255950086|ref|XP_002565810.1| Pc22g19070 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211592827|emb|CAP99195.1| Pc22g19070 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 682

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 205/364 (56%), Gaps = 23/364 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  A YV PTP+Q  ++P+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 201 FTNPPLDDHLIANIKLASYVIPTPVQKYSVPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 260

Query: 63  -----------------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105
                               GR R   P +LIL PTREL +Q+ +   K+     +   +
Sbjct: 261 AFQNGPSAAPVQGGGGQFSYGRQRKAYPTSLILAPTRELVSQIFEEARKFAYRSWVRPCV 320

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P
Sbjct: 321 VYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLANIKYLVLDEADRMLDMGFEP 380

Query: 166 YIQNITS----LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
            I+ I       V   RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I    
Sbjct: 381 QIRRIVEGEDMPVVDNRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQK- 439

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
              Y + + K ++L  +L +  +    +IF   K+   +L   L  Q F   AIHG+  Q
Sbjct: 440 -VEYVEDADKRSVLLDILHTHGSTGLTLIFVETKRMADSLSDFLINQRFPATAIHGDRTQ 498

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG 
Sbjct: 499 RERERALELFRNGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGN 558

Query: 342 HGKA 345
            G A
Sbjct: 559 TGIA 562


>gi|195127173|ref|XP_002008043.1| GI12051 [Drosophila mojavensis]
 gi|193919652|gb|EDW18519.1| GI12051 [Drosophila mojavensis]
          Length = 797

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 133/357 (37%), Positives = 212/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G   +++ AV  A Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ P+LT 
Sbjct: 277 FGHFGFDDQLLKAVRKAEYTQPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFIWPLLTH 336

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   R  +R    P  LIL PTREL+ Q+ +  +K+GK YN+ V    GG     Q+K L
Sbjct: 337 LMDQR-ELRAGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSKAL 395

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G ++++ TPGR++D        +  +  LV+DEADRM  MGF P +++I + V   RQ
Sbjct: 396 EQGCEIVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQ 455

Query: 180 TLLFSATMTDELQKVSENFLQNPKRI-EVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           TLLFSAT    +++++ + L +P RI + +   +  +  +H +V       K   LL  L
Sbjct: 456 TLLFSATFKKRIERLARDILTDPVRIVQGDLNEANQDITQHVYVFPNP-LQKWNWLLCHL 514

Query: 239 LQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++  S+  +   ++F  +K +   + ++L  + ++   +HG++DQ  R K+++ FK    
Sbjct: 515 VKFLSEGAV---LVFVTKKADAETVANNLLVKEYNCLLLHGDMDQADRNKVITQFKRKEC 571

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP + +V N+D+    + + HRIGRTGRAG  G A+TLV  +D
Sbjct: 572 DILVATDVAARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAYTLVTDKD 628


>gi|120564782|gb|ABM30180.1| VASA2n [Paragonimus westermani]
          Length = 606

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 143/380 (37%), Positives = 216/380 (56%), Gaps = 18/380 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADL L+  +   V  A Y +PTP+Q   IP++    D+   AQTG+GKTA+F++P+L  
Sbjct: 133 FADLDLNRIIRNNVELAQYERPTPVQKHAIPIIASNRDLMACAQTGSGKTAAFLIPILNR 192

Query: 62  ILEKGRA-----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           ++E+G             R + P  LIL PTRELA+Q+ ++  K+     +   +L GG 
Sbjct: 193 MIEEGPGDSLIATMETNRRKQFPVALILAPTRELASQIFEDARKFAYRSRIRPCVLYGGA 252

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              AQ  ++ +G ++L+ TPGR+ D   RG++ +++   L++DEADRMLDMGF P I+ I
Sbjct: 253 DMRAQLIEVSKGCNLLVATPGRLTDVIERGRIGLDHCRFLILDEADRMLDMGFEPQIRRI 312

Query: 171 T---SLVPF-TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
               +L P   RQTL+FSAT   E+Q ++++FL     + V    ST+E I      ++ 
Sbjct: 313 VEQDNLPPSGKRQTLMFSATFPHEIQMLAKDFLSRYIFLAVGRVGSTSENITQSI--SWV 370

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           +  KK   L  LL S D     ++F   K+   +L   L  Q F V +IHG+  Q  R  
Sbjct: 371 EEDKKRDALVDLLSSSDPGVLTLVFVETKRGADSLEDYLFSQKFQVASIHGDRTQDDREL 430

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            LS F+ G   ++VA+ +AARGLDIP+V HV N+D+P+  E Y+HRIGRTGR G  G A 
Sbjct: 431 ALSCFRNGRTPILVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRVGNLGIAT 490

Query: 347 TLVAKEDIKHIDAIEKLIEK 366
           +    ++      + +L+E+
Sbjct: 491 SFFNDKNRNLARGLVELLEE 510


>gi|326934515|ref|XP_003213334.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like
           [Meleagris gallopavo]
          Length = 482

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 153/417 (36%), Positives = 227/417 (54%), Gaps = 19/417 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL+P +V      G  +PTP+Q   IP +LQ  D  G A+TG+GKTA+FVLP+L +
Sbjct: 4   FRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQV 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRK 120

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178
             V+I TPGR+ DH        +  ++ LV+DEADR+L+ G   F   ++ I   VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+TD L ++    +  P   E  +   T + ++  ++      + K A L  L
Sbjct: 181 QTLLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYL--LVPEAVKDAYLVHL 238

Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q+ QD  ++   IIF    K    L   L K  F   A+H  + QR R   L+ FK   
Sbjct: 239 IQTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSI 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++A+D+AARGLDIP V  V N + P   + YIHR+GRT RAGR+G + T+V + DI 
Sbjct: 299 FKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIH 358

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH-NHARKNNPIPQKSTGFDRRKK 411
            + AIE+ I+ K+   + +   +      +DI  H N  R+   I  +   FD +K+
Sbjct: 359 LVHAIEEEIKLKLQEFSVEEKLV------LDILNHVNVTRRECEIELEYMDFDEKKE 409


>gi|219122480|ref|XP_002181572.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406848|gb|EEC46786.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 467

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 140/365 (38%), Positives = 211/365 (57%), Gaps = 15/365 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  L LS  ++  V   G+VKPTPIQ   IPL L   D+C  A TG+GKTA+F+LP+L  
Sbjct: 1   FNQLSLSRPLLRGVAAMGFVKPTPIQAAVIPLALAGRDICASAVTGSGKTAAFLLPILER 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKLE 120
           +L +   R +    +IL PTRELAAQ       + +  NL  +L++GG     AQ  +L 
Sbjct: 61  LLHRYSGRTK---AIILTPTRELAAQCLGMLTSFAQFTNLRASLIVGGAKNVNAQAAELR 117

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              DV++ TPGR+LDH  N   + + +IEILV+DEADR+LD+GF   +  +    P  RQ
Sbjct: 118 SRPDVIVATPGRLLDHITNSAGVTLEDIEILVLDEADRLLDLGFQDEVHELVKACPVQRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSST-----AETIEHCFVATYA--QYSKKC 232
           TLLFSATM  ++  + +  ++ P R+ ++  +++     A  +E  FV   A  + + + 
Sbjct: 178 TLLFSATMNTKVDDLIQLSMKRPVRVRISDKANSMDIEVAPRLEQEFVRVRAGNEGANRE 237

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            +L  LL ++   K  I+F + K     L       G     +HGN+ Q+ R+  L  F+
Sbjct: 238 GMLLALL-TRTFKKQTIVFFDTKAAAHRLMILCGLCGIKCAELHGNLSQQQRLTALEEFR 296

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +G + +++A+DLAARGLDI  V  V NF++P++   Y+HRIGRT RAGR G++ TL+  E
Sbjct: 297 KGDVDVLLATDLAARGLDIDRVKTVINFEMPSQVATYVHRIGRTARAGRGGRSCTLIG-E 355

Query: 353 DIKHI 357
             +H+
Sbjct: 356 GRRHL 360


>gi|125979227|ref|XP_001353646.1| GA19578 [Drosophila pseudoobscura pseudoobscura]
 gi|54642411|gb|EAL31160.1| GA19578 [Drosophila pseudoobscura pseudoobscura]
          Length = 812

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 133/355 (37%), Positives = 205/355 (57%), Gaps = 7/355 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G   +++ AV  A Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ P+L  
Sbjct: 277 FGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALAGRDIIGIAKTGSGKTAAFIWPLLMH 336

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L   R       P  LIL PTREL+ Q+ +  +K+GK YN+ V    GG     Q+K LE
Sbjct: 337 LMDQRELKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSKALE 396

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA++++ TPGR++D        +  +  LV+DEADRM  MGF P +++I + V   RQT
Sbjct: 397 QGAEIVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQT 456

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++++ + L +P RI     +   + I            K   LL  L++
Sbjct: 457 LLFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLVK 516

Query: 241 --SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S+ ++   +IF  +K +   + ++L  +  +   +HG++DQ  R K+++ FK     +
Sbjct: 517 FLSEGSV---LIFVTKKADAETVANNLLVKEHNCLLLHGDMDQADRNKVITQFKRKECDI 573

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +VA+D+AARGLDIP + +V N+D+    + + HRIGRTGRAG  G AFTLV  +D
Sbjct: 574 LVATDVAARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAFTLVTDKD 628


>gi|242237660|ref|YP_002985841.1| ATP-dependent RNA helicase RhlB [Dickeya dadantii Ech703]
 gi|242129717|gb|ACS84019.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
          Length = 428

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 140/369 (37%), Positives = 208/369 (56%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P V+ A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPLVIEALESKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHH 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +     + L  GG  ++ Q K 
Sbjct: 71  LLSHPALADRQVNQPRALIMAPTRELAVQIHTDAEALARVTGFKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LENGVDILIGTTGRLIDYTKQNHVNLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSAN 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     I+F N K     +   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRCIVFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTHGN 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGYSISLACEEYAL 366

Query: 356 HIDAIEKLI 364
           ++ AIE  I
Sbjct: 367 NLPAIETYI 375


>gi|213406193|ref|XP_002173868.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces japonicus
           yFS275]
 gi|212001915|gb|EEB07575.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces japonicus
           yFS275]
          Length = 553

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 138/391 (35%), Positives = 211/391 (53%), Gaps = 20/391 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+  PTPIQ +  P+ +   D+ GI+ TG+GKT S+ LP +  
Sbjct: 128 FEEAGFPNYVLKEVQALGFESPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 187

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+G    +    + GG+P   Q 
Sbjct: 188 INAQPLLAPGDG----PIVLVLAPTRELAVQIQQECTKFGHTSRIRNTCVYGGVPRGPQI 243

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG ++ I TPGR+LD  + GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 244 RDLARGVEICIATPGRLLDMLDSGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 303

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   E+Q+++ ++L++  ++ V +    A       V       K+  L +
Sbjct: 304 DRQTVMFSATWPKEVQRLARDYLKDYIQVTVGSLDLAASHNITQIVEVVDPADKRARLSK 363

Query: 237 QLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L ++ +D     ++F   K+    +   L + G+   AIHG+  Q  R  +L+ F+ G 
Sbjct: 364 DLEKAMEDKESKVLVFTGTKRVADEITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGK 423

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+A+RG+D+  + HVFNFD P   E+Y+HRIGRTGRAG  G A+T   +E+ K
Sbjct: 424 SPIMVATDVASRGIDVKGITHVFNFDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTQENSK 483

Query: 356 HI-DAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
              D I  L E K         +++P LE++
Sbjct: 484 QARDLIGILREAK--------QNIDPKLEEM 506


>gi|194246516|ref|YP_002004155.1| Superfamily II DNA and RNA helicase [Candidatus Phytoplasma mali]
 gi|193806873|emb|CAP18302.1| Superfamily II DNA and RNA helicase [Candidatus Phytoplasma mali]
          Length = 531

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 130/367 (35%), Positives = 221/367 (60%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  + P+   A+ +  ++KPT IQ   I  +++ +D+ G AQTGTGKT +F +P   I
Sbjct: 5   FENFNILPQTQKALKELNFLKPTAIQNLVISEMIEGYDIIGQAQTGTGKTFAFGIP---I 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +EK    ++  ++LIL PTRELA QV   F+K  K Y  + +A++ GG  +  Q K LE 
Sbjct: 62  IEKIDLNIKQTQSLILCPTRELALQVFQEFKKLIKFYVEIKIAVIYGGESYIKQFKVLET 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR++D   R K+  + ++IL +DEAD ML+MGF   ++ I   +P  RQT+
Sbjct: 122 KPHIIIATPGRVIDLLERKKIDFSGLKILTLDEADEMLNMGFQEALETILQKIPKKRQTV 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +QK++  +  NPK ++V   +    +++  +         K  +    L++
Sbjct: 182 LFSATLPPTIQKIANKYQNNPKVLKVYQKNIAVSSVQQFYFLVKEFDKLKLLVRLLDLEN 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +++   IIF N KK+V  +   L++  FSV  +HG++ Q  R ++++NF+   I++++A
Sbjct: 242 PNSV---IIFANTKKDVDEINAYLQENNFSVDFLHGDLKQNQRQQVMNNFRNQKIKILIA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI  +  V N+D+  + E Y+HRIGRTGRAG  G A++ VA   +  + ++E
Sbjct: 299 TDVAARGIDISSITMVINYDLSRQNEIYVHRIGRTGRAGLKGLAYSFVAPSKLSQLKSLE 358

Query: 362 KLIEKKV 368
             +++K+
Sbjct: 359 NYLKEKL 365


>gi|51712358|ref|XP_485792.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus]
 gi|82902181|ref|XP_918907.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus]
          Length = 411

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 133/379 (35%), Positives = 209/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + ML  
Sbjct: 40  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISMLQC 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG   +   +KL+ G
Sbjct: 100 LD---IQVRETQALILAPTRELAVQIQKGLLTLGDYMNVQCHACIGGTNVDEDIRKLDYG 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 157 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P  I V     T E I+  FVA   +   +   C L   L 
Sbjct: 217 ISATLPHEILEMTNKFMTDPICILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 275

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HGN+ Q+ R  I+  F+ G  +++
Sbjct: 276 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGNMPQKERESIMKEFRSGASRVL 331

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 332 ISTDIWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 391

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 392 IEQYYSTQIDEMPMNVADL 410


>gi|320166884|gb|EFW43783.1| DEAD/DEAH box helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 876

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 129/355 (36%), Positives = 204/355 (57%), Gaps = 3/355 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F   G    ++ A+   GY +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML
Sbjct: 290 VSFGHFGFDSPLMAAISKHGYTQPTPIQAQAVPVGLSGRDIIGIAKTGSGKTAAFLWPML 349

Query: 61  T-ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             I+++    V   P  +I+ PTREL  Q+ +   K+G+ Y L VA + GG     Q+K 
Sbjct: 350 VHIMDQDELDVGEGPIGVIVAPTRELCQQIYNEATKFGRVYGLRVAAIYGGESKYEQSKV 409

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G ++L+ TPGR+++        M     LV+DEAD+M +MGF P +++I + +   R
Sbjct: 410 LQQGVEILVATPGRLIEMLKDKLTNMLRATFLVLDEADKMFNMGFEPQVRSIINRIRPDR 469

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    +++++ + L +P RI V       + +    V  ++   K   L   +
Sbjct: 470 QTLLFSATFKKRIERLARDVLTDPVRIVVGDVGEANQDVAQTAVILHSDDEKFSWLTSHI 529

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++   T  + ++F  +K     +   L K  F   A+HG++DQ SR  I++ FK     +
Sbjct: 530 VEFMST-GSVLVFVTKKAGCQLVTDKLNKAHFEASALHGDVDQNSRNTIIAKFKRKAFPI 588

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +VA+D+AARGLDI  +  V NFDV    + + HRIGRTGRAG  G A+TL++ +D
Sbjct: 589 LVATDVAARGLDISHIRTVVNFDVARDIDTHTHRIGRTGRAGEKGSAYTLLSSKD 643


>gi|313217515|emb|CBY38596.1| unnamed protein product [Oikopleura dioica]
 gi|313229431|emb|CBY24018.1| unnamed protein product [Oikopleura dioica]
          Length = 401

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 133/379 (35%), Positives = 210/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G+   ++  +   G+ KP+ IQ + I  +++  DV   AQ+GTGKTA+F +  L +
Sbjct: 30  FDSMGIREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQAQSGTGKTATFSISTLQV 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     VR  + LIL PTRELA QV       G   N+   + IGG       +KL+ G
Sbjct: 90  LDTS---VRETQALILCPTRELAQQVQKVILALGDYMNVQAHVCIGGTNVGEDIRKLDFG 146

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR  D   R  L   NI++L++DEAD ML+ GF   I ++   +P   Q  L
Sbjct: 147 QHVVVGTPGRTFDMIRRRNLRTRNIKLLILDEADEMLNRGFKEQIYDVYRYLPPATQVCL 206

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 207 VSATLPHEILEMTHKFMSDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 265

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ K+ V  L   + +  F+V A+HG++ Q+ R +I+  F+ G  +++
Sbjct: 266 ----TITQAVIFCSTKRKVDWLAEKMREANFTVSAMHGDMPQKERNEIMREFRSGQTRVL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 322 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVRNDDIRILRD 381

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 382 IEQYYSTQIDEMPMNVADL 400


>gi|255538978|ref|XP_002510554.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223551255|gb|EEF52741.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 783

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 201/363 (55%), Gaps = 5/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ LS  ++ A    GY KPTPIQ   IPL L   D+CG A TG+GKTA+F LP L  
Sbjct: 149 FMEINLSRPLLRACEVLGYTKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 208

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     RV+  R LIL PTRELA QV    EK  +  ++   L++GG+  + Q   L   
Sbjct: 209 LLFRPKRVQAIRVLILTPTRELAVQVHSMVEKLAQFTDIRCCLIVGGLSTKVQESALRSM 268

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D+++ TPGR++DH  N   + ++++ +L++DEADR+L++GF   I  +  L P  RQT+
Sbjct: 269 PDIVVATPGRMIDHLRNTMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 328

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLL 239
           LFSATMT+E+ ++ +  L  P R+  +  +    T+  E   +    + +++  LL   L
Sbjct: 329 LFSATMTEEINELIKLSLTKPLRLSADPSTKRPATLTEEVVRIRRMREVNQEAVLLA--L 386

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+      IIF   K+    L       GF    +HGN+ Q  R+  L  F++  +  +
Sbjct: 387 CSKTFTSRVIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRLDALELFRKQQVDFL 446

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  V  V N+  P    +Y+HR+GRT RAGR G A T V   D   + A
Sbjct: 447 IATDVAARGLDIIGVQTVINYACPRELTSYVHRVGRTARAGREGYAVTFVTDTDRSLLKA 506

Query: 360 IEK 362
           I K
Sbjct: 507 IAK 509


>gi|114794734|pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
          Length = 417

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 142/393 (36%), Positives = 220/393 (55%), Gaps = 25/393 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 17  FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 76

Query: 63  L-------------EKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
           +             E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 77  IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 136

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 137 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 196

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 197 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 255

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + S K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 256 -WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 314

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 315 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 374

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WLN 372
            A +   + +I    D ++ L+E K +   WL 
Sbjct: 375 LATSFFNERNINITKDLLDLLVEAKQEVPSWLE 407


>gi|329297696|ref|ZP_08255032.1| ATP-dependent RNA helicase SrmB [Plautia stali symbiont]
          Length = 442

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 130/341 (38%), Positives = 196/341 (57%), Gaps = 4/341 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73
           A+ D G+ +PT IQ + IP  L+  DV G A TGTGKTA+++LP L  +L+  R +   P
Sbjct: 18  ALQDKGFTRPTAIQAEAIPAALEGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R LIL PTRELA QVAD   +  K+ +L +A + GG+ +    +      D+++ T GR+
Sbjct: 78  RILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQ 192
           L +          +E L++DEADRMLDMGF   I+ I     + +QTLLFSAT+  D ++
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQTLLFSATLEGDNIK 197

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
             +E  L +P  IE +   S  + I+  +         K  LL  LL+ Q  +K  I+F 
Sbjct: 198 DFAERLLNDPVAIEADPSKSERKKIQQWYYRA-DNLEHKIKLLVHLLK-QPEVKRAIVFV 255

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
            +++ +  L   + + G     + G + Q +R + +    +G + ++VA+D+AARG+DI 
Sbjct: 256 RKRERLHELVTWMHEAGLRSSYLEGEMVQANRNEAIKRLNDGRVNVLVATDVAARGIDID 315

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +V HV N+D+P  A+ Y+HRIGRTGRAGR G A +LV   D
Sbjct: 316 NVTHVINYDLPRTADVYLHRIGRTGRAGRKGTAISLVEAHD 356


>gi|301171475|ref|NP_001180346.1| ATP-dependent RNA helicase DDX3X isoform 3 [Homo sapiens]
 gi|296235291|ref|XP_002762846.1| PREDICTED: ATP-dependent RNA helicase DDX3X isoform 2 [Callithrix
           jacchus]
 gi|297709770|ref|XP_002831597.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Pongo
           abelii]
 gi|194388152|dbj|BAG65460.1| unnamed protein product [Homo sapiens]
          Length = 646

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 220/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 166 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 225

Query: 63  L-------------EKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
           +             E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 226 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 285

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 286 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 345

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 346 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 404

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + S K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 405 -WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 463

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 464 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 523

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 524 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 555


>gi|303314883|ref|XP_003067450.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240107118|gb|EER25305.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 668

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 138/361 (38%), Positives = 205/361 (56%), Gaps = 23/361 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 186 FTNPPLDDHLISNIKLATYKTPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQ 245

Query: 63  LEK----------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
             K                GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 246 AFKNGPSAVPTQNANQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVV 305

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 306 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQ 365

Query: 167 IQNITS---LVPFT-RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I     + P   RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 366 IRRIVEGEDMPPVNGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQ--K 423

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             Y + + K ++L  +L +  T    +IF   K+   +L   L  Q F   AIHG+  QR
Sbjct: 424 VEYVEDADKRSVLLDILHTHGTGLT-LIFVETKRMADSLSEFLINQNFPATAIHGDRTQR 482

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 483 ERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 542

Query: 343 G 343
           G
Sbjct: 543 G 543


>gi|258563612|ref|XP_002582551.1| ATP-dependent rRNA helicase RRP3 [Uncinocarpus reesii 1704]
 gi|237908058|gb|EEP82459.1| ATP-dependent rRNA helicase RRP3 [Uncinocarpus reesii 1704]
          Length = 472

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 135/372 (36%), Positives = 213/372 (57%), Gaps = 14/372 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+   +  A    GY  PT IQ ++IPL LQ  DV G+A+TG+GKTA+F LP+L  
Sbjct: 48  FKDLGVIDSLCEACESLGYKAPTQIQAESIPLALQGRDVIGLAETGSGKTAAFALPILQA 107

Query: 63  LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L      +  P++   L+L PTRELA Q+++  E  G   ++  A+++GG+   +Q   L
Sbjct: 108 L------MDKPQSMFGLVLAPTRELAYQISEQVEALGSLISVRCAVIVGGMDMVSQAIAL 161

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +++ TPGR+LDH    K   + N++ LV+DEADR+LD+ F P +  I  ++P  R
Sbjct: 162 GKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPKER 221

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +T LFSATM+ +++ +    L NP R+ +++    T  T+   ++    +Y     +   
Sbjct: 222 RTYLFSATMSSKVESLQRASLSNPLRVSISSNKYQTVATLLQNYLFIPHKYKD---IYFV 278

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L ++   ++ I+F         L   L   GF    +HG + Q +R+  L  F+  +  
Sbjct: 279 YLLNEFPGQSVIVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRN 338

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIP V  V N+D+P+ ++ YIHR+GRT RAG+ G AF+LV + DI+  
Sbjct: 339 ILVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGHAFSLVTQFDIEIW 398

Query: 358 DAIEKLIEKKVD 369
             IE  + K  D
Sbjct: 399 QRIEGALGKTFD 410


>gi|330925821|ref|XP_003301209.1| hypothetical protein PTT_12655 [Pyrenophora teres f. teres 0-1]
 gi|311324270|gb|EFQ90696.1| hypothetical protein PTT_12655 [Pyrenophora teres f. teres 0-1]
          Length = 690

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 137/419 (32%), Positives = 223/419 (53%), Gaps = 32/419 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + GL  +++  V   GY +PTPIQ   IP+ LQ  D+ G+A+TG+GKTA+F+LP+L 
Sbjct: 270 NWQEAGLPDQLMRIVDQVGYTEPTPIQRAAIPIALQCRDLIGVAKTGSGKTAAFLLPLLA 329

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + +        R   P  LIL PTRELA Q+ +   K+        A+L+GG   E Q+
Sbjct: 330 YISQLPPLDAINRHDGPYALILAPTRELAQQIEEEARKFATPLGFRTAVLVGGHSIEEQS 389

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            ++  GA+++I TPGR+ D   R  L+++    +++DEADRM+DMGF   +  I + +P 
Sbjct: 390 FQMRDGAEIIIATPGRLNDCIERRVLVLSQCTYVIMDEADRMIDMGFEEPVNKILAALPV 449

Query: 177 T--------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
           +                    RQT++++ATM   L+++++ + + P  + +       +T
Sbjct: 450 SNEKPDTEEAEDPDAMKRGLYRQTMMYTATMPPALERIAKQYSRRPAIVTIGNLGEATDT 509

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
           +E   V       K+   LQ++L S +     I+F N K+N   +   ++  GFS   +H
Sbjct: 510 VEQR-VEFIQGEEKRKKRLQEILTSGEFAPPIIVFVNIKRNCDAIARDIKHMGFSSATMH 568

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G+  Q  R   L+  K G   ++VA+DLA RG+DIPDV  V NF++P+  E Y HRIGRT
Sbjct: 569 GSKTQEQREAALAALKSGQTNVLVATDLAGRGIDIPDVSLVVNFNMPSSIEAYTHRIGRT 628

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           GR  + G A T    ED   +  +++++ K       +LS +   L K + AQ    ++
Sbjct: 629 GRQDKKGTAITFWGNEDADVLYDLKQILTK------SNLSKVPEDLRKHEAAQQKGKKR 681


>gi|145353647|ref|XP_001421118.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581354|gb|ABO99411.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 755

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 134/363 (36%), Positives = 202/363 (55%), Gaps = 4/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +L LS  +  A    GY KPTPIQ   IP+ +   DVCG A TG+GKTA+F+LP L  
Sbjct: 150 FDELHLSRPLTRACEALGYKKPTPIQAAVIPIAMTGRDVCGRAVTGSGKTAAFMLPQLER 209

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +G         L+L PTRELA QV    E   +   +   L++GG+    Q   L  
Sbjct: 210 MLHRGPRPAAATHVLVLVPTRELAVQVHQMTESLAQFTTIRAVLVVGGLSANVQAAALRT 269

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++++ TPGR++DH  N     + ++  L++DEADR+L+MGF+  I+ I    P  RQT
Sbjct: 270 RPEIVVATPGRVIDHVRNTHSFGLEDLATLILDEADRLLEMGFLEEIKEIVRQCPKKRQT 329

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+T  ++ ++   ++NP R+  +T  +T +  +E        Q ++K A L  ++
Sbjct: 330 LLFSATLTAGVEALASLSMKNPARLSADTLGTTPKRLVEEVLKLKPNQSAQKEAFLMAIV 389

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+   K+ IIF   K+    L   +         +HG++ Q  R+  L  F+ GT+  +
Sbjct: 390 -SRSYDKSTIIFSQTKQEAHRLKIIMGLSDIKAGELHGDMTQTQRLAALDEFRTGTVTHL 448

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDIP V  V +FD P    +Y+HR+GRT RAG+ G A T + + D K +  
Sbjct: 449 IATDVAARGLDIPSVDAVISFDAPKTLASYLHRVGRTARAGKKGTALTFMEESDRKLVKT 508

Query: 360 IEK 362
           I K
Sbjct: 509 IAK 511


>gi|320158163|ref|YP_004190541.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
 gi|319933475|gb|ADV88338.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
          Length = 443

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 145/410 (35%), Positives = 213/410 (51%), Gaps = 12/410 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + K T IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKDLGLDNRLLKNLKHLDFQKATKIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   R PR +IL PTRELA QV           +    L++GG  F  Q K L
Sbjct: 61  HKSLKTKALSARDPRGVILAPTRELAKQVYGELRTMLGGLSYDATLIVGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGR+ DH     + +  +E LV+DEADRMLD+GF P ++ I +     R 
Sbjct: 121 ARYPKFIVATPGRLADHLEHKSVFLEGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+   E+  ++   L  PKRI +   +   + I   F         K ALL++
Sbjct: 181 QTLMFSATLDHAEVNDIASEMLDAPKRIAIGVSNEEHKDITQRFYLC-DHLDHKEALLER 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L S+   +  IIF   + +   L   L ++     A+ G+++Q  R  I+S F+    +
Sbjct: 240 VL-SEAEYRQVIIFTATRSDTDRLTEKLNEKKLKAIALSGSLNQNQRNTIMSQFERTVFK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLDI  V HV NFD+P   E Y+HRIGRTGRAG  G A +LV  +D    
Sbjct: 299 ILVTTDVASRGLDISTVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAISLVGPKDWDSF 358

Query: 358 DAIEKLIEKKV-----DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
             +E  +++ +     D L G    + P   K D      A      PQK
Sbjct: 359 KRVEAYLQQDIAFSEFDDLKGKFKGIKP--RKPDFRAKKQATTKKARPQK 406


>gi|301165769|emb|CBW25341.1| putative RNA helicase dead-box protein [Bacteriovorax marinus SJ]
          Length = 591

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 137/383 (35%), Positives = 229/383 (59%), Gaps = 14/383 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           M+F+DL L   ++ A+ D GY  PT IQ K IPL+L++  D  G AQTGTGKTA+F LP+
Sbjct: 1   MNFSDLTLPESLLRALEDKGYKSPTDIQEKAIPLLLEKDTDFVGQAQTGTGKTAAFSLPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  ++     V+    ++L PTRELA Q+ +  + + K   + +  + GG+P + Q + L
Sbjct: 61  LAKIDSKSGDVQ---AIVLSPTRELANQITEEMKSFCKYEKIKILSVYGGVPLDGQIRTL 117

Query: 120 ERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++G   V++ TPGR+LD   RG L + N ++ V+DEAD MLDMGFI  ++ I S +   +
Sbjct: 118 KKGRPQVVVGTPGRVLDLIKRGVLKLENAKLAVLDEADEMLDMGFIDDVKTILSELGDKK 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +T ++SATM   +  + +++L  P+ I++   + + E IE  +        K+  L + +
Sbjct: 178 KTWMYSATMPKAILSLIKSYLNEPEVIKIEKKTLSNEDIEQKYFLI-----KRGNLGEAV 232

Query: 239 LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +  D++ +  GI+FC  K +   L      +GF   A+HG++ Q  R   +  FK+  +
Sbjct: 233 CRILDSLTDYYGIVFCRTKIDAKKLSDEFNYRGFPSDALHGDMSQTQRDLTMRAFKKKKV 292

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+V +D+AARG+D+ ++ HV N+ +P   E+Y+HRIGRTGRAG+ G A+T++   +   
Sbjct: 293 KLLVCTDVAARGIDVDNLTHVINYGLPQDLESYVHRIGRTGRAGQKGCAYTVIDSSEKFR 352

Query: 357 IDAIEKLIEKKVDWLNGDLSSLN 379
           I  +E+L+  K++   G L S++
Sbjct: 353 IRMLERLMNTKIEL--GTLPSID 373


>gi|46116372|ref|XP_384204.1| hypothetical protein FG04028.1 [Gibberella zeae PH-1]
 gi|91207782|sp|Q4IFI0|RRP3_GIBZE RecName: Full=ATP-dependent rRNA helicase RRP3
          Length = 486

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 216/369 (58%), Gaps = 10/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DLG++  +  A     Y  PTPIQ K+IP+ LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 62  FKDLGVNDALCEACEKLNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQA 121

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+K +        L+L PTRELA Q+   FE  G   +L  A+++GG+    Q   L +
Sbjct: 122 LLDKPQPLF----GLVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALGK 177

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR++DH  + K   +  ++ L++DEADR+LDM F P I  I   VP  R+T
Sbjct: 178 KPHIVVATPGRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFVPRERRT 237

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LFSAT++ +++ +    L++P ++ +++    T  T+   ++  +  + +K   L  L+
Sbjct: 238 YLFSATISSKIESLQRASLRDPVKVSISSNKYQTVSTLLQNYL--FIPHPQKDVHLIYLI 295

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   ++ I+F         +   L   GF    +HG + Q SR+  L+ F+ GT  ++
Sbjct: 296 -NEHAGQSTIVFTRTVWETQRVSILLRTLGFGAIPLHGQLSQSSRLGALNKFRSGTRDIL 354

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V N+D+P  ++ YIHR+GRT RAG+ G A +LV + D++    
Sbjct: 355 VATDVAARGLDIPSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGVAISLVTQYDLEIYLR 414

Query: 360 IEKLIEKKV 368
           IE  + KK+
Sbjct: 415 IEAALGKKL 423


>gi|85107031|ref|XP_962298.1| hypothetical protein NCU07712 [Neurospora crassa OR74A]
 gi|74696531|sp|Q7S9J4|DBP10_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-10
 gi|28923900|gb|EAA33062.1| hypothetical protein NCU07712 [Neurospora crassa OR74A]
          Length = 934

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 136/399 (34%), Positives = 222/399 (55%), Gaps = 35/399 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ K IPL+L+R DV G+A+TG+GKTA+FV+PM+  
Sbjct: 101 FQAMGLNAHLLRAITRKGFSVPTPIQRKAIPLILERKDVVGMARTGSGKTAAFVIPMIER 160

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    RV   R LI+ P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 161 LKGHSPRV-GSRALIMSPSRELALQTLKVVKELGRGTDLKTVLLVGGDSLEEQFGMMASN 219

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L + +I+ +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 220 PDIIIATPGRFLHLKVEMNLSLASIKYVVFDEADRLFEMGFATELTEILHALPPSRQTLL 279

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
           FSAT+   L + +   LQ P  + ++  +  +  +E  F A      K+ ALL  L    
Sbjct: 280 FSATLPSSLVEFARAGLQEPSLVRLDAETKVSPDLESAFFAVKGG-EKEGALLHLLHDVI 338

Query: 239 ----------------LQSQD-------------TMKNGIIFCNQKKNVVNLCHSLEKQG 269
                           LQ++              T  + IIF   K +V  + + L+  G
Sbjct: 339 KVPLGPPEGTKEESDELQARKRKREYRPNPKEKPTEYSTIIFTATKHHVEYIANLLKLAG 398

Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329
           F+V  ++G++DQ +R+  + NF+ G   ++V +D+AARG+D+P + +V N+D P++ + +
Sbjct: 399 FAVSYVYGSLDQTARLIQVDNFRRGRTHILVVTDVAARGIDMPALANVINYDFPSQPKIF 458

Query: 330 IHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           +HR+GRT RAG+ G A+ LV + D+ ++  ++  + +K+
Sbjct: 459 VHRVGRTARAGQRGWAYGLVRQSDVPYLLDLQLFLGRKL 497


>gi|327482576|gb|AEA85886.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri DSM 4166]
          Length = 460

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 142/393 (36%), Positives = 226/393 (57%), Gaps = 14/393 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LS  ++  +   GY   TPIQ +++PL+L+ HD+   A+TG+GKTA+F + +L  
Sbjct: 6   FSTLPLSAAMLANLEALGYATMTPIQAQSLPLMLKGHDLIAQAKTGSGKTAAFGIALLDP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L     R    + L+L PTRELA QVA    +  +   N+ +  L GG+    Q   LE 
Sbjct: 66  LNP---RYFGCQALVLCPTRELADQVAKELRRLARAADNIKILTLCGGVSIGPQIASLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR+ +H  +G L ++ +  LV+DEADRMLDMGF   I  I    P  RQTL
Sbjct: 123 GAHVIVGTPGRVQEHLKKGTLKLDGLNTLVLDEADRMLDMGFYDAIAEIIGQTPAKRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++ +F++ P+++ V +  + ++ IE  F     +  ++   + +LL S
Sbjct: 183 LFSATYPASIEQLAASFMRAPQQVRVESLHTDSQ-IEQRFYEIDPE--QRLDAVARLLAS 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ + FC  K+    L   L  +G S  A++G+++QR R ++L+ F   ++ ++VA
Sbjct: 240 FRP-ESCVAFCFTKQQCQELVEYLNAKGISAAALNGDLEQRDRDQVLAMFANRSLSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++    E ++HRIGRTGRAG  G A +LVA  +     AIE
Sbjct: 299 TDVAARGLDIDALDMVINVELARDPEIHVHRIGRTGRAGNQGLAASLVAPAEAHRAQAIE 358

Query: 362 KLIEKKVDWLN------GDLSSLNPPLEKIDIA 388
           KL +  ++W +      G  + L PP+  + IA
Sbjct: 359 KLQKSPLNWHSLDELKAGAGAPLQPPMVTLCIA 391


>gi|62740097|gb|AAH94097.1| Unknown (protein for MGC:115016) [Xenopus laevis]
          Length = 695

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 220/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ +   ++  +    Y +PTP+Q   IP+++++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 221 FHDVTMGEIIMGNIQLTRYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPILSQ 280

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 281 IYADGPGDAMKHLQENGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVY 340

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 341 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 400

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   RQT++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 401 RRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVV- 459

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + +   K + L  LL +       ++F   KK    L   L  +G++  +IHG+  QR 
Sbjct: 460 -WVEEMDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRD 518

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 519 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 578

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   +++I    D ++ L+E K +   WL
Sbjct: 579 LATSFFNEKNINITKDLLDLLVEAKQEVPSWL 610


>gi|301789077|ref|XP_002929955.1| PREDICTED: probable ATP-dependent RNA helicase DDX53-like
           [Ailuropoda melanoleuca]
          Length = 590

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 133/362 (36%), Positives = 214/362 (59%), Gaps = 9/362 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK---G 66
           P+++ ++  AG+ KPTPIQ +  P++LQ  D+ G+AQTGTGKT S+++P    L      
Sbjct: 195 PELIESIKRAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHLNNQPIS 254

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R     P  L+L PTRELA QV     KY     L    + GG   E Q + + +G D++
Sbjct: 255 REERNGPGMLVLTPTRELALQVEAECSKYSYK-GLKSICIFGGRNREQQIRDITKGIDII 313

Query: 127 ICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           I TPGR L++      + + +I  LV+DEAD+MLD+GF   I  I   V   RQT++ SA
Sbjct: 314 IATPGR-LNYLQMNNFVNLQSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTVMISA 372

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T +D + ++ +++L+ P  + V T    A  T+    + T  +  +K +LLQ+ LQ++  
Sbjct: 373 TWSDTIHQLGQSYLKEPMIVYVGTLDLVAVNTVTQNVIITTQE--EKRSLLQEFLQNRSP 430

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
               I+F  ++    +L   L  QG +V ++HG+ DQ  R + L +F+ G +++++A+DL
Sbjct: 431 QDKVIVFVRRRLVADDLSSDLSIQGITVQSLHGDRDQHDRERALEDFRSGKVKVLIATDL 490

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           A+RGLD+ D+ HV+N+D P   E Y+HR+GRTGRAG+ G + TL+ + D K    + K++
Sbjct: 491 ASRGLDVNDITHVYNYDFPRNIEEYVHRVGRTGRAGKTGLSITLMTQNDWKIATELIKIL 550

Query: 365 EK 366
           ++
Sbjct: 551 KR 552


>gi|195572505|ref|XP_002104236.1| GD20854 [Drosophila simulans]
 gi|194200163|gb|EDX13739.1| GD20854 [Drosophila simulans]
          Length = 784

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 148/376 (39%), Positives = 218/376 (57%), Gaps = 15/376 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ L+  +   V  A Y KPTP+Q   IP+++   D+   AQTG+GKTA+F++P+L  
Sbjct: 297 FDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQ 356

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           + E G    + P  L+L PTRELA Q+ +  +K+     +  A+L GG     Q ++L+R
Sbjct: 357 MYELGH---QYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDR 413

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV--PFT-- 177
           G  +++ TPGR+ D   RGK+ + NI  LV+DEADRMLDMGF P I+ I   +  P T  
Sbjct: 414 GCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQ 473

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALL 235
           RQTL+FSAT   ++Q+++ +FL N   + V    ST+E I    +  Y   + S    LL
Sbjct: 474 RQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLL 533

Query: 236 QQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
             +    +  K+   +IF   KK   +L   L +    V +IHG+  Q+ R + L  F+ 
Sbjct: 534 SSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRS 593

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+ +AARGLDIP V HV NFD+P+  E Y+HRIGRTGR G  G A +   +++
Sbjct: 594 GDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKN 653

Query: 354 IKHI--DAIEKLIEKK 367
            ++I  D +E LIE K
Sbjct: 654 -RNICSDLLELLIETK 668


>gi|50122015|ref|YP_051182.1| ATP-dependent RNA helicase DbpA [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612541|emb|CAG75991.1| ATP-independent RNA helicase [Pectobacterium atrosepticum SCRI1043]
          Length = 460

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 216/373 (57%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L  + +  + + GY + TP+Q  T+P VL   DV   A+TG+GKTA+F    + +
Sbjct: 6   FSSLALPAEQLSNLNELGYTEMTPVQAATLPAVLSGADVRAKAKTGSGKTAAF---GIGL 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L++        + L+L PTRELA QV+    +  +   N+ +  L GG P   Q   L  
Sbjct: 63  LDRIVVSDFTTQALVLCPTRELADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSLVH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI DH  +  L ++++++LV+DEADRMLDMGF   I ++ S  P  RQTL
Sbjct: 123 APHIVVGTPGRIQDHLRKQSLALDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   E++++S    + P+R E+      +  IE  F  T     ++  LL  +L S
Sbjct: 183 LFSATYPQEIEQISARVQRQPQRFEIADDVEES-AIEQRFYETTK--DQRLPLLIAIL-S 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + ++FCN K++  ++  +LE +G SV A+HG+++QR R ++L  F   + +++VA
Sbjct: 239 HYQPASCVVFCNTKRDCQSVFEALEMRGISVSALHGDLEQRDRDQVLVRFSNRSCRVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++  V NF++    E ++HRIGRTGRAG  G A +L   +++   + IE
Sbjct: 299 TDVAARGLDIKELALVVNFELAFDPEVHVHRIGRTGRAGTQGLAVSLCTPQEMNRANLIE 358

Query: 362 KLIEKKVDWLNGD 374
             I  ++ W + D
Sbjct: 359 DYIGMRIKWTSAD 371


>gi|309751440|gb|ADO81424.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae R2866]
          Length = 418

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 139/372 (37%), Positives = 214/372 (57%), Gaps = 10/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 14  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 73

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   +        PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 74  LLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQVI 133

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P    
Sbjct: 134 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 193

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           R T+LFSAT++ ++++++   + +P+ IE+     T   I E  F   Y     K ALL 
Sbjct: 194 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELF---YPSNQDKMALLL 250

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ +   +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G +
Sbjct: 251 TLMEDE-WPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDL 309

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   +
Sbjct: 310 DILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMN 369

Query: 357 IDAIEKLIEKKV 368
           + AIE+ I   +
Sbjct: 370 LPAIEEYIGHSI 381


>gi|281202503|gb|EFA76705.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 1173

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 137/368 (37%), Positives = 211/368 (57%), Gaps = 7/368 (1%)

Query: 3    FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
            F DLGL+P ++      G+  P+ IQ  TIP +L   D+   A+TG GKTA+F LP+L+ 
Sbjct: 662  FEDLGLAPWLLACCKQLGFKAPSNIQYNTIPAILSGRDILASAKTGQGKTAAFALPILSA 721

Query: 63   LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            L +    +     ++L PTRELA Q+ + F   G   N+   ++IGGI    Q+  L++ 
Sbjct: 722  LSEDPYGIF---AVVLTPTRELAVQIGEQFRALGSAINVNCCVVIGGIDNVQQSLILDKR 778

Query: 123  ADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+  H N G KL +     LV+DEADRML   F   +Q I   +P   QTL
Sbjct: 779  PHIIVATPGRLAAHLNNGMKLALQFCRFLVLDEADRMLGPDFELEVQKIVEHLPPKIQTL 838

Query: 182  LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            L+SATMT+  +K+    ++NP   E N    T ET+   +V   AQ +K C L+  LL+ 
Sbjct: 839  LYSATMTNSNKKLESIPIKNPYIFEDNNKYDTVETLSQYYVFMPAQ-AKDCHLVY-LLKK 896

Query: 242  QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             D+  + I+F N  + V  +   L K      ++H  + Q+ R+  L  FK G I++++A
Sbjct: 897  HDS-SSVIVFINNCRTVEAVKGMLNKLDIKSVSLHSFLSQKDRLNALKQFKSGKIRVLIA 955

Query: 302  SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
            +D+A+RGLDIPDV  V N+ + N +++YIHR+GRT R GR G+A + V   D++ +  +E
Sbjct: 956  TDVASRGLDIPDVQMVINYKLSNSSKDYIHRVGRTARFGRSGRAISFVTPHDVELVKNVE 1015

Query: 362  KLIEKKVD 369
              I K+++
Sbjct: 1016 AAIGKQLE 1023


>gi|221130645|ref|XP_002155556.1| PREDICTED: similar to topoisomerase (DNA) III beta [Hydra
           magnipapillata]
          Length = 1349

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 139/374 (37%), Positives = 217/374 (58%), Gaps = 20/374 (5%)

Query: 3   FADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F D  GL+P  + A+ ++GY  PTPIQ +T P+ +   DV  IA+TG+GKT +F+LP   
Sbjct: 109 FEDFRGLNPAQLKALYNSGYKAPTPIQAQTWPIAMFDRDVVSIAKTGSGKTLAFLLPAYM 168

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +   R++  +   L+L PTRELA Q+    EK+G       A   GG P   Q + +  
Sbjct: 169 KINLRRSQGTIS-VLVLAPTRELATQIQLEAEKFGSVAGYYSACAYGGAPKRNQLQAINS 227

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  VL+ TPGR+ D     ++ ++++  LV+DEADRMLDMGF P I+ I   +P  RQTL
Sbjct: 228 GISVLVATPGRLNDFLESNEVNLSSVFYLVLDEADRMLDMGFEPQIRTIIRCLPRKRQTL 287

Query: 182 LFSATMTDELQKVSENFLQNPKRIE---VNTPSSTA----ETIEHCFVATYAQYSKKCAL 234
           +FSAT  +E+++++++FL  P  I    V   +S+     E I+   +   +   K   L
Sbjct: 288 MFSATWPEEVRRLADDFLYQPVHIRLGIVGGSTSSGLQANEMIKQHLILLNSGEDKDGEL 347

Query: 235 L----QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +     +  Q++D +   +IF  +K     L + L + G +  A+HG+ DQ+ R K L+ 
Sbjct: 348 INLIKSRFHQNRDLV---LIFVARKNTCDFLTNILNRVGIAASAMHGDRDQKYREKTLAA 404

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F++G+  +MVA+DLA+RG+D+  +  V N+D+ N  E+Y+HRIGRTGRAG  G++FT + 
Sbjct: 405 FRDGSRPIMVATDLASRGIDVRGISAVINYDLANSTEDYVHRIGRTGRAGMSGESFTFLT 464

Query: 351 KEDIKHIDAIEKLI 364
           + +    D I K I
Sbjct: 465 RSN----DDIWKAI 474


>gi|283785363|ref|YP_003365228.1| ATP-independent RNA helicase [Citrobacter rodentium ICC168]
 gi|282948817|emb|CBG88418.1| ATP-independent RNA helicase [Citrobacter rodentium ICC168]
          Length = 457

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 135/365 (36%), Positives = 207/365 (56%), Gaps = 8/365 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   A +   ++L+L 
Sbjct: 22  GYLSMTPVQAAALPAILAGQDVRVQAKTGSGKTAAFGLGLLQHID---AALFKTQSLVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  ++  N  +  L GG PF AQ   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARSMPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +G + +  +  LV+DEADRMLDMGF   I  +    P +RQTLLFSAT  + +  +S   
Sbjct: 139 KGTVSLEGLTTLVMDEADRMLDMGFSDAIDEVIRFAPASRQTLLFSATWPEAIAAISARV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            ++P  IE++   +    IE  F  T  Q   K   LQ LL S     + ++FCN KK+ 
Sbjct: 199 QRDPVTIEIDAVDAL-PAIEQQFFETSTQ--GKIPRLQTLL-SLHQPASCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L   G S  A+HG+++QR R   L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 QAVCDALNASGQSALALHGDLEQRERDMTLVRFANGSARVLVATDVAARGLDIKALELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           NF++    E ++HRIGRT RAG  G A +  A  + +  + + ++++  ++W +   +  
Sbjct: 315 NFELAWDPEVHVHRIGRTARAGNRGLAISFCAPAEAQRANILAEMLQLTLNWCDAPTNMA 374

Query: 379 NPPLE 383
             PLE
Sbjct: 375 IKPLE 379


>gi|121591768|ref|ZP_01678973.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           2740-80]
 gi|121546370|gb|EAX56627.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           2740-80]
          Length = 444

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 138/385 (35%), Positives = 210/385 (54%), Gaps = 12/385 (3%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML    
Sbjct: 1   DLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSL 60

Query: 65  KGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
           K +A   + PR LIL PTRELA QV           + T  L+ GG  F  Q K L RG 
Sbjct: 61  KTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGP 120

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR-QTLL 182
             ++ TPGR+ DH +   L +  +E LV+DEADRMLD+GF   ++ I +     R QTL+
Sbjct: 121 RFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLM 180

Query: 183 FSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQ 240
           FSAT+   ++  ++   L  PKRI +   S   + I +H ++  +  +  K ALL ++L 
Sbjct: 181 FSATLAHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDH--KEALLDRILA 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  IIF   + +   L   L +      A+ GN++Q  R  I+  F+    +++V
Sbjct: 239 DAE-YRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A+RGLDIP V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D +    +
Sbjct: 298 TTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRV 357

Query: 361 EKLIEKKVDW-----LNGDLSSLNP 380
           E  +++++ +     L G    L P
Sbjct: 358 EAFLQQEIQFEVLAGLEGKFKGLKP 382


>gi|2580550|gb|AAC51829.1| dead box, X isoform [Homo sapiens]
 gi|2580552|gb|AAC51830.1| dead box, X isoform [Homo sapiens]
          Length = 662

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 220/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 182 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 242 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 301

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 302 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 361

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 362 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 420

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + S K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 421 -WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 479

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 480 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 539

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 540 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 571


>gi|145511916|ref|XP_001441880.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409141|emb|CAK74483.1| unnamed protein product [Paramecium tetraurelia]
          Length = 604

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 160/442 (36%), Positives = 236/442 (53%), Gaps = 42/442 (9%)

Query: 1   MDFADLGLSPKVVC-AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M F D+   P+++   +L AG+  PT IQ +   + L  HD+ GIAQTG+GKT +F+LP 
Sbjct: 133 MRFEDVQCFPQMLMDLLLKAGFKGPTAIQAQGWSIALTGHDLIGIAQTGSGKTLAFLLPA 192

Query: 60  LT-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  IL   +AR   P+ LIL PTREL  Q+ D F+K+     L  A L GG     Q  +
Sbjct: 193 IVHIL--AQARSHDPKCLILAPTRELTLQIYDQFQKFSVGSQLYAACLYGGQDRYIQKSQ 250

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G  +LI  PGR++D  ++G   +  +  LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 251 LRKGPQILIACPGRLIDLLDQGCTTLKQVSFLVLDEADRMLDMGFEPQIRKIVDQIRPQR 310

Query: 179 QTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVAT---------YAQ- 227
           QT+LFSAT   E+QK++ +F  Q P  I++     T+  +    V           Y Q 
Sbjct: 311 QTMLFSATWPKEVQKLALDFCKQEPVHIQIGNVELTSNRMIKQIVYVMKAIDKNQRYNQT 370

Query: 228 ------YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
                 Y++    L   L      K  +IFC+ KK    L  +L+++G    A+HG+  Q
Sbjct: 371 IDGANIYTRSSISLLLYLLKDIAHKKILIFCSTKKGCDQLQKTLDREGIRCLALHGDKKQ 430

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
             R  ++S+F+ G    ++A+D+A+RGLDI D+  V N+D+P   E+Y+HRIGRTGRAG 
Sbjct: 431 TERDYVMSHFRNGRSTALIATDVASRGLDIKDIEVVVNYDMPKVIEDYVHRIGRTGRAGA 490

Query: 342 HGKAFTLVAK-EDIKHI-DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
            G++ +  A  ED++   D +E L E + D +  +L SL        I Q+      NP 
Sbjct: 491 IGQSISFFASDEDVRMAKDLVEILRESQND-IPYELRSL--------IDQNTKGNNYNPY 541

Query: 400 PQKSTGFDRRKKNYSSQKSHIP 421
                    R+ N S Q+ H+P
Sbjct: 542 ---------RRWNNSGQR-HMP 553


>gi|74006742|ref|XP_861537.1| PREDICTED: similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide
           3 isoform 11 [Canis familiaris]
          Length = 646

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 220/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 166 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 225

Query: 63  L-------------EKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
           +             E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 226 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 285

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 286 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 345

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 346 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 404

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + S K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 405 -WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 463

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 464 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 523

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 524 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 555


>gi|15030137|gb|AAH11321.1| Ddx27 protein [Mus musculus]
          Length = 572

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 138/359 (38%), Positives = 211/359 (58%), Gaps = 3/359 (0%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           + LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L  L  
Sbjct: 1   MNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIY 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
              +  + R L+L PTREL  QV    ++  +  ++T  L +GG+  ++Q   L    D+
Sbjct: 61  KPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDI 120

Query: 126 LICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           LI TPGR++DH  N     +++IE+L++DEAD+MLD  F   ++ I  +    RQT+LFS
Sbjct: 121 LIATPGRLIDHLHNCPSFHLSSIEVLILDEADKMLDEYFEEQMKEIIRMCSHHRQTMLFS 180

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQLLQSQD 243
           ATMTDE++ ++   L+NP RI VN+ +  A  +   F+     +   + A++  LL    
Sbjct: 181 ATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMRTF 240

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
           T  + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++VA+D
Sbjct: 241 T-DHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 299

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           +AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K +  I K
Sbjct: 300 VAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVK 358


>gi|108763335|ref|YP_634008.1| DEAD-box ATP dependent DNA helicase [Myxococcus xanthus DK 1622]
 gi|5668905|gb|AAD46062.1| DEAD-box protein [Myxococcus xanthus]
 gi|108467215|gb|ABF92400.1| ATP-dependent helicase, DEAD/DEAH-box family [Myxococcus xanthus DK
           1622]
          Length = 808

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 136/395 (34%), Positives = 211/395 (53%), Gaps = 10/395 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  +  A+ + GY  PTP+Q +     ++  D+   ++TGTGKTA+F LP+L
Sbjct: 29  IGFDDMNLSEPIRLALAERGYTNPTPVQARAFRPAIEGKDLIVRSKTGTGKTAAFGLPLL 88

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK  A  R  R LIL PTRELA QVAD  +   K+  L +A + GG   + Q   LE
Sbjct: 89  ---EKIPADERRVRALILCPTRELALQVADELKMLAKHKGLKIAAIYGGASMKQQEDALE 145

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGR+ DH NRG L ++  +  V+DEAD ML+ GF   +  I   +P TRQ 
Sbjct: 146 EGTPIIVGTPGRVFDHINRGNLKLDACDHAVLDEADEMLNQGFYEEVTRILDRLPKTRQV 205

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++Q +   +  N + + ++    T E I H        + K   L+  L  
Sbjct: 206 LLFSATVPTDIQNLIARYTTNAETLLLSGDVFTVEHIHHIRYDVSDAFPKPRNLIYVL-- 263

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +N IIFCN + +   +   L + GF    ++G++ Q+ R +++   K G +  MV
Sbjct: 264 EKEEPQNAIIFCNTRDDTALVTAVLNRNGFDAELLNGDLPQKERERVMGKVKRGEVAFMV 323

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + +V N+ +P     Y+HR+GRTGR G  G A  L +  ++    ++
Sbjct: 324 ATDIAARGIDISGLEYVINYSLPEDPAVYLHRVGRTGRIGNKGTAINLFSGRELATYTSL 383

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           EK    K      D   +  P E + +    H R+
Sbjct: 384 EKKYGIKF-----DKREMPAPEEAMRLWTERHVRE 413


>gi|76253275|emb|CAH61467.1| Pl10-related protein [Rana lessonae]
          Length = 687

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 220/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ +   ++  +    Y +PTP+Q   IP+++ + D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 225 FHDVNMGEIIMGNIQLTRYTRPTPVQKHAIPIIIDKRDLMACAQTGSGKTAAFLLPILSQ 284

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + + GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 285 IYADGPGDAMKHLKDNGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSKVRPCVVY 344

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 345 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQI 404

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   RQT++FSAT   E+Q ++ +FL+    + V    ST+E I    V 
Sbjct: 405 RRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVV- 463

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + +   K + L  LL +       ++F   KK    L   L  +G++  +IHG+  QR 
Sbjct: 464 -WVEEMDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRD 522

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 523 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 582

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   +++I    D ++ L+E K +   WL
Sbjct: 583 LATSFFNEKNINITKDLLDLLVEAKQEVPSWL 614


>gi|156546663|ref|XP_001603634.1| PREDICTED: similar to ENSANGP00000016791 [Nasonia vitripennis]
          Length = 1035

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 211/368 (57%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G+S K +  +   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 372 WAQCGVSKKELDVLRKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 431

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL++   A    P  LI+ PTREL  Q+  + +K+ K+  L+   + GG     Q  +L+
Sbjct: 432 ILDQPPLADGDGPIALIMTPTRELCMQIGKDSKKFTKSLGLSHVCVYGGTGISEQIAELK 491

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   V   
Sbjct: 492 RGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIMENVRPD 551

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT   +++ ++   L  P  ++V   S   + +E   V       K   LL+ 
Sbjct: 552 RQTVLFSATFPRQMEALARRILTKPVEVQVGGRSVVCKDVEQ-HVVVLDDDLKFRKLLEI 610

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   QD   + IIF ++++N   L   L K   S  ++HG IDQ  R   + +FK G ++
Sbjct: 611 LGHFQDK-GSAIIFVDKQENADTLLKDLMKASHSCMSLHGGIDQCDRDSTIMDFKAGRVK 669

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  +  ++ 
Sbjct: 670 LLVATSVAARGLDVKSLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITPDQERYS 729

Query: 358 DAIEKLIE 365
             I +  E
Sbjct: 730 GDIVRAFE 737


>gi|194745414|ref|XP_001955183.1| GF18634 [Drosophila ananassae]
 gi|190628220|gb|EDV43744.1| GF18634 [Drosophila ananassae]
          Length = 704

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 140/389 (35%), Positives = 212/389 (54%), Gaps = 12/389 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF ++ L   V+  +   GY  PT IQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 267 DFTEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIV 326

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +  ++   R   P  L+L PTRELA Q+     ++G +  +    + GG P  +Q + L
Sbjct: 327 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGSQMRDL 386

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 387 QRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 446

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+++++E+FL N  +I + +   +A       V    ++SK+  L   L 
Sbjct: 447 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVEVCDEFSKEEKLKSLLS 506

Query: 240 QSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
              DT +N    IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G  
Sbjct: 507 DIYDTSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 566

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + K 
Sbjct: 567 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 626

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
             A+       VD L      +NP LE +
Sbjct: 627 AKAL-------VDVLREANQEINPALENL 648


>gi|302791241|ref|XP_002977387.1| hypothetical protein SELMODRAFT_232961 [Selaginella moellendorffii]
 gi|300154757|gb|EFJ21391.1| hypothetical protein SELMODRAFT_232961 [Selaginella moellendorffii]
          Length = 413

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 137/347 (39%), Positives = 200/347 (57%), Gaps = 12/347 (3%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM---PR 74
           +G+ KP+PIQ  + P +L   D+ GIA TG+GKT +F +P L  IL   +   +     R
Sbjct: 5   SGFEKPSPIQAHSWPFLLDGRDLIGIAATGSGKTLAFGVPALVHILNHKKKEKKHSKGSR 64

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTRELA Q+A   E+ G +  + V  L GG     Q   L  G D+++ TPGR+ 
Sbjct: 65  CLVLSPTRELAQQIAAVLEEAGASCGVKVVCLYGGSSKGPQYSSLRSGCDIVVATPGRLQ 124

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D  + G   ++ I  LV+DEADRMLD+GF P ++ I S +P  RQT++FSAT    +QK+
Sbjct: 125 DFVDEGVCKLDQITYLVLDEADRMLDLGFEPAVRAIVSHIPQERQTIMFSATWPTSVQKL 184

Query: 195 SENFLQNPK-------RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
           ++ F+Q+         +I V +   +A       V      S+   L + L     T +N
Sbjct: 185 AQEFIQDASPELISFLQITVGSEDLSANHDVTQIVEVLDDKSRDRRLQELLRLYHKTKRN 244

Query: 248 GI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
            + +F   KK  V + + L+KQG++V  IHG+  Q++R + LS FK+G+  L++A+D+AA
Sbjct: 245 RVLVFVLYKKEAVRVENFLQKQGWNVTGIHGDKSQQARNQALSAFKDGSHPLLIATDVAA 304

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           RGLDIPDV  V N+  P   E+Y+HRIGRTGRAG+ G A T     D
Sbjct: 305 RGLDIPDVEFVINYSFPLTTEDYVHRIGRTGRAGKKGTAHTFFTTAD 351


>gi|122227760|sp|Q0ILZ4|RH9_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 9
          Length = 628

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 133/366 (36%), Positives = 213/366 (58%), Gaps = 11/366 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++ A LG+SPK+V  +   G  K  PIQ   +   +Q  D+ G A+TGTGKT +F +P+L
Sbjct: 98  LEVAKLGISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPIL 157

Query: 61  TILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             + +   +    + P  ++L PTRELA QV   F     + N+    + GG P   Q +
Sbjct: 158 DAIIRHNEKNSPGKFPLAIVLAPTRELAKQVEREFSD---SSNVETICVYGGTPISQQIR 214

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G DV+I TPGR++D   RG L ++ +  +V+DEAD+ML +GF   ++ I   VP  
Sbjct: 215 QLNYGVDVVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPK 274

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALL 235
           RQTL+FSATM   +Q++++ +L+NP  I++        AE I    +A+      K A+L
Sbjct: 275 RQTLMFSATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGH--AKPAVL 332

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +L++        I+F   K++   L +++ +  F   A+HG+I Q  R + L  F+EG 
Sbjct: 333 GELIKEHAKGGKCIVFTQTKRDADRLSYTMGRS-FQCQALHGDITQAQRERTLKGFREGH 391

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +++A+D+AARGLDIP+V  V +F++PN +E ++HR GRTGRAG+ GKA  + + +  +
Sbjct: 392 FNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSR 451

Query: 356 HIDAIE 361
            I  +E
Sbjct: 452 AIRMVE 457


>gi|21355075|ref|NP_649767.1| CG7878 [Drosophila melanogaster]
 gi|7298989|gb|AAF54192.1| CG7878 [Drosophila melanogaster]
 gi|15291973|gb|AAK93255.1| LD33749p [Drosophila melanogaster]
 gi|220946004|gb|ACL85545.1| CG7878-PA [synthetic construct]
 gi|220955750|gb|ACL90418.1| CG7878-PA [synthetic construct]
          Length = 703

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 130/352 (36%), Positives = 201/352 (57%), Gaps = 14/352 (3%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE----- 64
           P ++  +   G+ KP+PIQ +  P++LQ HD+ GIAQTGTGKT +F+LP +   E     
Sbjct: 292 PDMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTP 351

Query: 65  ---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +G A V     L+L PTRELA Q+    +KY     +    + GG     Q   LER
Sbjct: 352 RGTRGGANV-----LVLAPTRELALQIEMEVKKYSFR-GMKAVCVYGGGNRNMQISDLER 405

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+++ICTPGR+ D      + ++ I  LV+DEADRMLDMGF P I+ +   +   RQT+
Sbjct: 406 GAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTI 465

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT    ++++++++++NP ++ V +    A       +        K   +   +++
Sbjct: 466 MTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSFVKN 525

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             +    IIFC +K    +L   L   GF    IHGN DQ  R + +++ K G ++++VA
Sbjct: 526 MSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVA 585

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +D+A+RGLDI D+ HV N+D P+  E Y+HR+GRTGRAGR G + +   +ED
Sbjct: 586 TDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTRED 637


>gi|308498555|ref|XP_003111464.1| hypothetical protein CRE_03767 [Caenorhabditis remanei]
 gi|308241012|gb|EFO84964.1| hypothetical protein CRE_03767 [Caenorhabditis remanei]
          Length = 405

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 211/370 (57%), Gaps = 8/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + IP +L+  DV   AQ+GTGKTA+F + +L  
Sbjct: 31  FDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQS 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 91  LD---TQVRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYG 147

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   + +I   +P   Q +L
Sbjct: 148 QHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVL 207

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L+   L   
Sbjct: 208 LSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLID--LYDT 265

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   ++FCN ++ V  L   +++  F+V ++HG+++Q+ R +++  F+ GT ++++++
Sbjct: 266 LTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLIST 325

Query: 303 DLAARGLDIPD---VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           D+ ARGLD+P    V +V N+D+PN  E YIHRIGR+GR GR G A   V ++D++ +  
Sbjct: 326 DVWARGLDVPQVSLVSNVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRD 385

Query: 360 IEKLIEKKVD 369
           IE+    ++D
Sbjct: 386 IEQYYSTQID 395


>gi|71800669|gb|AAZ41384.1| Ded1-like DEAD-box RNA helicase [Chironomus tentans]
          Length = 776

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 156/421 (37%), Positives = 235/421 (55%), Gaps = 38/421 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ L+  +   +  A Y KPTP+Q   IP++L   D+   AQTG+GKTA+F++P+L  
Sbjct: 269 FDDIKLTEIIRTNIKMARYDKPTPVQKYAIPIILSGRDLMSCAQTGSGKTAAFLVPILNR 328

Query: 62  ILEKGRA-----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           +LE+G +           R + P  L+L PTRELA Q+ +  +K+     +  A+L GG 
Sbjct: 329 MLEQGASMNPASNRPYQRRKQYPLGLVLAPTRELATQIYEEAKKFSYRSRMRPAVLYGGN 388

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L+RG  +++ TPGR+ D  NRGK+ + N+  LV+DEADRMLDMGF P I++I
Sbjct: 389 NTSEQMRELDRGCHLIVATPGRLDDIINRGKIGLENLRFLVLDEADRMLDMGFEPQIRHI 448

Query: 171 --TSLVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                +P T  RQTL+FSAT    +Q+++ +FL N   + V    ST+E I    +  + 
Sbjct: 449 IENRDMPPTGQRQTLMFSATFPKNIQELASDFLSNYIFLAVGRVGSTSENITQTIL--WV 506

Query: 227 QYSKKCALLQQLLQ---------SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
             ++K + L  LL          S D++   +IF   KK    L   L +    V +IHG
Sbjct: 507 NENEKRSYLLDLLSRLREGSPDYSPDSLT--LIFVETKKGADALEEFLYQNKHPVTSIHG 564

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           +  QR R   L  F+ G   ++VA+ +AARGLDIP V HV N+D+P+  E Y+HRIGRTG
Sbjct: 565 DRSQREREDALKCFRSGDCPILVATAVAARGLDIPHVKHVINYDLPSDVEEYVHRIGRTG 624

Query: 338 RAGRHGKAFTLVAKEDIKHI-DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
           R G  G A +   +++   + D +E LIE      N +L S    LE++   ++   R++
Sbjct: 625 RMGNLGIATSFFNEKNRNIVSDLVELLIE-----TNQELPSF---LEEMANDRYGGPRRS 676

Query: 397 N 397
           N
Sbjct: 677 N 677


>gi|320037809|gb|EFW19746.1| ATP-dependent RNA helicase DED1 [Coccidioides posadasii str.
           Silveira]
          Length = 666

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 138/361 (38%), Positives = 205/361 (56%), Gaps = 23/361 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 184 FTNPPLDDHLISNIKLATYKTPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQ 243

Query: 63  LEK----------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
             K                GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 244 AFKNGPSAVPTQNANQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVV 303

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 304 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQ 363

Query: 167 IQNITS---LVPFT-RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I     + P   RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 364 IRRIVEGEDMPPVNGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQ--K 421

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             Y + + K ++L  +L +  T    +IF   K+   +L   L  Q F   AIHG+  QR
Sbjct: 422 VEYVEDADKRSVLLDILHTHGTGLT-LIFVETKRMADSLSEFLINQNFPATAIHGDRTQR 480

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 481 ERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 540

Query: 343 G 343
           G
Sbjct: 541 G 541


>gi|39951881|ref|XP_363657.1| hypothetical protein MGG_01583 [Magnaporthe oryzae 70-15]
 gi|152032663|sp|A4RK80|PRP28_MAGO7 RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|145020572|gb|EDK04701.1| hypothetical protein MGG_01583 [Magnaporthe oryzae 70-15]
          Length = 674

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 133/365 (36%), Positives = 199/365 (54%), Gaps = 32/365 (8%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE-----KGRARVRMPR 74
           GY +PTP+Q   IP+ LQ  D+ GI++TG+GKTA+FVLPML+ +E         +   P 
Sbjct: 276 GYTEPTPVQRAAIPIALQCRDLIGISKTGSGKTAAFVLPMLSYIEPLPPLNEVTKTEGPY 335

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKLERGADVLICTPGRI 133
            LIL PTRELA Q+     K+      TV  LIG     E     L  GA++++ TPGR+
Sbjct: 336 ALILAPTRELATQIQAEVIKFATRMGFTVVCLIGNKRTIEEDAFALRNGAEIIVATPGRL 395

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT---------------- 177
           +D   R  L+++    +V+DEADRM+D GF   I  I + +P +                
Sbjct: 396 VDCLERHLLVLSQCSYVVLDEADRMVDGGFEDSIHKILAALPPSNGKPDDRDAEDPNIMS 455

Query: 178 ---------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
                    RQT+++SATM   ++++++N+L++P  + + T     +T+E   +   ++ 
Sbjct: 456 KFLTPNLRYRQTVMYSATMPPSVERIAKNYLKHPAMVTIGTIGEAVDTVEQQAMWVVSED 515

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            ++   L+ +L +  T K  I+F N K N   +   L+   FS   +HGN  Q  R   L
Sbjct: 516 ERRNK-LRAMLNTYGTGKLVIVFVNTKSNCDAVAKDLKSSSFSAVTLHGNKTQDQREAAL 574

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +F++G   ++VA+D+AARGLDIPDV  V NF++    E Y HRIGRTGRAG+ G A T 
Sbjct: 575 QSFRDGRTNVLVATDVAARGLDIPDVSLVINFNMAGTIEVYTHRIGRTGRAGKEGMAITF 634

Query: 349 VAKED 353
              ED
Sbjct: 635 CGPED 639


>gi|302673650|ref|XP_003026511.1| hypothetical protein SCHCODRAFT_62132 [Schizophyllum commune H4-8]
 gi|300100194|gb|EFI91608.1| hypothetical protein SCHCODRAFT_62132 [Schizophyllum commune H4-8]
          Length = 437

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 144/354 (40%), Positives = 200/354 (56%), Gaps = 21/354 (5%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV--RMPRT-L 76
           G+ +PTPIQ  T P  L+  DV GIA+TG+GKT +F +P+L  L   R+      P T L
Sbjct: 25  GFKEPTPIQACTWPPALEGRDVVGIAETGSGKTLAFGIPLLNRLITSRSTTTQSAPVTAL 84

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE---RGAD-----VLIC 128
           ++ PTRELA Q  D     GK + +    + GG+P E Q + L    +G D     V++ 
Sbjct: 85  VVAPTRELAIQTHDTLSALGKPFGIASVAVFGGVPKEPQVRMLRNANKGKDGMTTRVVVG 144

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV-PFT-RQTLLFSAT 186
           TPGRILD  N G   + N++ LV+DEADRMLD GF   I+NI S   P   RQTL+FSAT
Sbjct: 145 TPGRILDLMNDGACDLGNVDYLVLDEADRMLDKGFENDIRNIISATKPLAERQTLMFSAT 204

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             D ++K++  F  NP R+ V +   TA +     V       +K + L  LL++ +  K
Sbjct: 205 WPDSVRKLASTFQNNPVRVTVGSDDLTANSRVEQIVEVLDDGRQKDSRLTALLRNANLKK 264

Query: 247 NG--------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     ++F   KK    +  +L +QGFSV  + G++ Q +R++ L  FK G   L
Sbjct: 265 VAAGMDESRVLVFALYKKECSRVEQNLRRQGFSVGGLSGDMSQSARIEALEAFKTGKTNL 324

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +VA+D+AARGLDI +VG V N+  P   E+YIHRIGRTGR G+ GK+ T    E
Sbjct: 325 LVATDVAARGLDIANVGLVVNYTFPLTIEDYIHRIGRTGRGGKSGKSITFFTGE 378


>gi|161784285|sp|Q5BCU6|PRP28_EMENI RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|259486970|tpe|CBF85264.1| TPA: Pre-mRNA-splicing ATP-dependent RNA helicase prp28 (EC
           3.6.1.-) [Source:UniProtKB/Swiss-Prot;Acc:Q5BCU6]
           [Aspergillus nidulans FGSC A4]
          Length = 782

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 136/436 (31%), Positives = 230/436 (52%), Gaps = 39/436 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + GL  +++  V   GY +PTPIQ   IP+ +Q  D+ G+A TG+GKTA+F+LP+L  
Sbjct: 348 WDESGLPKRLLELVDRVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLCY 407

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +       E    +   P  ++L PTRELA Q+    +K+ +     V  ++GG  FE Q
Sbjct: 408 IAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEEQ 467

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +P
Sbjct: 468 AYSLRNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALP 527

Query: 176 FT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
            T                         RQT++++ATM   +++++  +L+ P  + + + 
Sbjct: 528 VTNEKPDTEEAEDSSAMSRHLGSKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSA 587

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               +T+E   V   A   K+   L ++L S D     I+F N K+N   +   +++ GF
Sbjct: 588 GEAVDTVEQR-VEMIAGEDKRKKRLGEILSSGDFRPPIIVFVNIKRNCDAIAREIKQWGF 646

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++    E+Y 
Sbjct: 647 SSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVINFNMATSIESYT 706

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ 
Sbjct: 707 HRIGRTGRAGKSGVAITFLGNEDADVMYDLKQML------IKSPISRVPEELRKHEAAQS 760

Query: 391 NHARKNNPIPQKSTGF 406
              R      ++++GF
Sbjct: 761 KPTRGAGKKIEEASGF 776


>gi|311278491|ref|YP_003940722.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308747686|gb|ADO47438.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
          Length = 444

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 137/366 (37%), Positives = 213/366 (58%), Gaps = 4/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ A+ D G+ +PT IQ   IP  L+  DV G A TGTGKTA+++LP L  
Sbjct: 6   FSELELDESLLDALQDKGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          +E L++DEADRMLD+GF   I++I+    + +QT+
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDLGFAQDIEHISGETRWRKQTM 185

Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  D ++  +E  L++P  +EV+   ST E  +       A   +    L + L 
Sbjct: 186 LFSATLEGDAIKDFAERLLEDP--VEVSATPSTRERKKIHQWYYRADNFEHKLELLKHLL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD +   I+F  +++ V  +   L   G + C + G + Q  R++ +    +G + +++
Sbjct: 244 KQDDVTRSIVFVRKRERVHEMAELLRAAGINNCYLEGEMAQAKRVEGIKRLTDGRVNVLI 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DIPDV HVFNFD+P   + Y+HRIGRTGRAGR G A +LV   D   +  I
Sbjct: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLLMKI 363

Query: 361 EKLIEK 366
            + IE+
Sbjct: 364 GRYIEE 369


>gi|149633893|ref|XP_001512924.1| PREDICTED: similar to helicase like protein 2 [Ornithorhynchus
           anatinus]
          Length = 651

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 218/392 (55%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 168 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 227

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 228 IYTDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVY 287

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 288 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 347

Query: 168 QNI----TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 348 RRIVEQDTMPQKGIRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 406

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + S K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 407 -WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 465

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 466 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 525

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 526 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 557


>gi|146284217|ref|YP_001174370.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri A1501]
 gi|145572422|gb|ABP81528.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri A1501]
          Length = 512

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 142/393 (36%), Positives = 226/393 (57%), Gaps = 14/393 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LS  ++  +   GY   TPIQ +++PL+L+ HD+   A+TG+GKTA+F + +L  
Sbjct: 58  FSTLPLSAAMLANLEALGYATMTPIQAQSLPLMLKGHDLIAQAKTGSGKTAAFGIALLDP 117

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L     R    + L+L PTRELA QVA    +  +   N+ +  L GG+    Q   LE 
Sbjct: 118 LNP---RYFGCQALVLCPTRELADQVAKELRRLARAADNIKILTLCGGVSIGPQIASLEH 174

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR+ +H  +G L ++ +  LV+DEADRMLDMGF   I  I    P  RQTL
Sbjct: 175 GAHVIVGTPGRVQEHLKKGTLKLDGLNTLVLDEADRMLDMGFYDAIAEIIGQTPAKRQTL 234

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++ +F++ P+++ V +  + ++ IE  F     +  ++   + +LL S
Sbjct: 235 LFSATYPASIEQLAASFMRAPQQVRVESLHTDSQ-IEQRFYEIDPE--QRLDAVARLLAS 291

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ + FC  K+    L   L  +G S  A++G+++QR R ++L+ F   ++ ++VA
Sbjct: 292 FRP-ESCVAFCFTKQQCQELVEYLNGKGISAAALNGDLEQRDRDQVLAMFANRSLSVLVA 350

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++    E ++HRIGRTGRAG  G A +LVA  +     AIE
Sbjct: 351 TDVAARGLDIDALDMVINVELARDPEIHVHRIGRTGRAGNQGLAASLVAPAEAHRAQAIE 410

Query: 362 KLIEKKVDWLN------GDLSSLNPPLEKIDIA 388
           KL +  ++W +      G  + L PP+  + IA
Sbjct: 411 KLQKSPLNWHSLDELKAGAGAPLQPPMVTLCIA 443


>gi|24662330|ref|NP_648413.1| CG6418 [Drosophila melanogaster]
 gi|7294797|gb|AAF50131.1| CG6418 [Drosophila melanogaster]
 gi|16769458|gb|AAL28948.1| LD32732p [Drosophila melanogaster]
 gi|220946788|gb|ACL85937.1| CG6418-PB [synthetic construct]
          Length = 791

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 214/373 (57%), Gaps = 14/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F   G   +++ AV  A Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 271 FGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMH 330

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + +K       P  LIL PTREL+ Q+ +  +K+GK YNL V    GG     Q+K LE
Sbjct: 331 VMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALE 390

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA++++ TPGR++D        +  +  LV+DEADRM  MGF P +++I + V   RQ 
Sbjct: 391 QGAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQC 450

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT    +++++ + L +P RI     +   + I            K   LL  L++
Sbjct: 451 LMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLVK 510

Query: 241 --SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S+ ++   +IF  +K +   + ++L  + ++   +HG++DQ  R K+++ FK     +
Sbjct: 511 FLSEGSV---LIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDI 567

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED----- 353
           +VA+D+AARGLDIP + +V N+D     E + HRIGRTGRAG  G A+TLV  +D     
Sbjct: 568 LVATDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVTDKDKEFAG 627

Query: 354 --IKHIDAIEKLI 364
             +++++  ++L+
Sbjct: 628 HLVRNLEGADQLV 640


>gi|195171504|ref|XP_002026545.1| GL21821 [Drosophila persimilis]
 gi|194111461|gb|EDW33504.1| GL21821 [Drosophila persimilis]
          Length = 812

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 133/355 (37%), Positives = 205/355 (57%), Gaps = 7/355 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G   +++ AV  A Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ P+L  
Sbjct: 277 FGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALAGRDIIGIAKTGSGKTAAFIWPLLMH 336

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L   R       P  LIL PTREL+ Q+ +  +K+GK YN+ V    GG     Q+K LE
Sbjct: 337 LMDQRELKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSKALE 396

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA++++ TPGR++D        +  +  LV+DEADRM  MGF P +++I + V   RQT
Sbjct: 397 QGAEIVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQT 456

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++++ + L +P RI     +   + I            K   LL  L++
Sbjct: 457 LLFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLVK 516

Query: 241 --SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S+ ++   +IF  +K +   + ++L  +  +   +HG++DQ  R K+++ FK     +
Sbjct: 517 FLSEGSV---LIFVTKKADAETVANNLLVKEHNCLLLHGDMDQADRNKVITQFKRKECDI 573

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +VA+D+AARGLDIP + +V N+D+    + + HRIGRTGRAG  G AFTLV  +D
Sbjct: 574 LVATDVAARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAFTLVTDKD 628


>gi|291299972|ref|YP_003511250.1| DEAD/DEAH box helicase domain-containing protein [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569192|gb|ADD42157.1| DEAD/DEAH box helicase domain protein [Stackebrandtia nassauensis
           DSM 44728]
          Length = 544

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 132/349 (37%), Positives = 189/349 (54%), Gaps = 7/349 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL P +V A+ + G   P PIQ  TIP  L   DV G  +TG+GKT SF LP+L  
Sbjct: 20  FADLGLPPAIVSALAERGVTSPFPIQAATIPDALSGKDVLGRGRTGSGKTLSFGLPLLVT 79

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L  + GR + + PR LIL PTRELA QVAD  + Y +   L + ++ GG     Q + L 
Sbjct: 80  LATDGGRTQAKRPRGLILTPTRELAMQVADALDPYARILRLDMKVVCGGTSMPRQIEALR 139

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVL+ TPGR+ D  +R   ++++++I V+DEAD+M DMGF+P +  I   VP   Q 
Sbjct: 140 NGVDVLVATPGRLRDLIDRKVCILDSVKIAVLDEADQMADMGFLPEVTEILDQVPPGGQR 199

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+  E+  +   +L  P   EV+  +    T+ H  +       K  A +   + 
Sbjct: 200 MLFSATLEKEIDTLVRRYLSEPVTHEVDPSAGAVTTMSHHVLVV---KPKAKAPVTAAIA 256

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     I F   +     +   L + G     +HG + Q++R  +L  FK G +  +V
Sbjct: 257 GQD--GRSIAFVRTQLGADRVADQLREAGVRAEPLHGGMTQQARNAVLERFKGGGLDCLV 314

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           A+D+AARG+ +  V  V + D     ++Y+HR GRT RAGR G   TL 
Sbjct: 315 ATDVAARGIHVDGVDVVLHVDPARDGKDYLHRAGRTARAGRSGTVVTLA 363


>gi|189205421|ref|XP_001939045.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187975138|gb|EDU41764.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 690

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 137/419 (32%), Positives = 222/419 (52%), Gaps = 32/419 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + GL  +++  V   GY +PTPIQ   IP+ LQ  D+ G+A+TG+GKTA+F+LP+L 
Sbjct: 270 NWQEAGLPDQLMRIVDQVGYTEPTPIQRAAIPIALQCRDLIGVAKTGSGKTAAFLLPLLA 329

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + +        R   P  LIL PTRELA Q+ +   K+        A+L+GG   E Q+
Sbjct: 330 YISQLPPLDAINRHDGPYALILAPTRELAQQIEEEARKFATPLGFRTAVLVGGHSIEEQS 389

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP- 175
            ++  GA+++I TPGR+ D   R  L+++    +++DEADRM+DMGF   +  I + +P 
Sbjct: 390 FQMRDGAEIIIATPGRLNDCIERRVLVLSQCTYVIMDEADRMIDMGFEEPVNKILAALPV 449

Query: 176 -------------------FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
                                RQT++++ATM   L+++++ + + P  + +       +T
Sbjct: 450 NNEKPDTEEAEDADAMKRGLYRQTMMYTATMPPALERIAKQYSRRPAIVTIGNLGEATDT 509

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
           +E   V       K+   LQ++L S +     I+F N K+N   +   ++  GFS   +H
Sbjct: 510 VEQR-VEFIQGEEKRKKRLQEILTSGEFAPPIIVFVNIKRNCDAIARDIKHMGFSSATMH 568

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G+  Q  R   L+  K G   ++VA+DLA RG+DIPDV  V NF++P+  E Y HRIGRT
Sbjct: 569 GSKTQEQREAALAALKSGQTNVLVATDLAGRGIDIPDVSLVVNFNMPSSIEAYTHRIGRT 628

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           GR  + G A T    ED   +  +++++ K       +LS +   L K + AQ    ++
Sbjct: 629 GRQDKKGTAITFWGNEDADVLYDLKQILTK------SNLSKVPEDLRKHEAAQQKGKKR 681


>gi|145357256|ref|XP_001422836.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583080|gb|ABP01195.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 710

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 134/363 (36%), Positives = 202/363 (55%), Gaps = 4/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +L LS  +  A    GY KPTPIQ   IP+ +   DVCG A TG+GKTA+F+LP L  
Sbjct: 150 FDELHLSRPLTRACEALGYKKPTPIQAAVIPIAMTGRDVCGRAVTGSGKTAAFMLPQLER 209

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +G         L+L PTRELA QV    E   +   +   L++GG+    Q   L  
Sbjct: 210 MLHRGPRPAAATHVLVLVPTRELAVQVHQMTESLAQFTTIRAVLVVGGLSANVQAAALRT 269

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++++ TPGR++DH  N     + ++  L++DEADR+L+MGF+  I+ I    P  RQT
Sbjct: 270 RPEIVVATPGRVIDHVRNTHSFGLEDLATLILDEADRLLEMGFLEEIKEIVRQCPKKRQT 329

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+T  ++ ++   ++NP R+  +T  +T +  +E        Q ++K A L  ++
Sbjct: 330 LLFSATLTAGVEALASLSMKNPARLSADTLGTTPKRLVEEVLKLKPNQSAQKEAFLMAIV 389

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+   K+ IIF   K+    L   +         +HG++ Q  R+  L  F+ GT+  +
Sbjct: 390 -SRSYDKSTIIFSQTKQEAHRLKIIMGLSDIKAGELHGDMTQTQRLAALDEFRTGTVTHL 448

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDIP V  V +FD P    +Y+HR+GRT RAG+ G A T + + D K +  
Sbjct: 449 IATDVAARGLDIPSVDAVISFDAPKTLASYLHRVGRTARAGKKGTALTFMEESDRKLVKT 508

Query: 360 IEK 362
           I K
Sbjct: 509 IAK 511


>gi|327254038|gb|EGE65667.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_7v]
          Length = 432

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 136/360 (37%), Positives = 211/360 (58%), Gaps = 8/360 (2%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84
           TP+Q   +P +L   DV   A+TG+GKTA+F    L +L+K  A +   + L+L PTREL
Sbjct: 2   TPVQAAALPAILAGKDVRVQAKTGSGKTAAF---GLGLLQKIDASLFQTQALVLCPTREL 58

Query: 85  AAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           A QVA    +  +   N  +  L GG PF  Q   L+    +++ TPGR+LDH  +G + 
Sbjct: 59  ADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVS 118

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           ++ + +LV+DEADRMLDMGF   I ++    P +RQTLLFSAT  + +  +S    ++P 
Sbjct: 119 LDALNMLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAITAISGRVQRDPL 178

Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
            IE+++ +     IE  F  T ++   K  LLQ+LL S     + ++FCN KK+   +C 
Sbjct: 179 AIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPSSCVVFCNTKKDCQAVCD 234

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
           +L   G S  ++HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V NF++ 
Sbjct: 235 ALNDIGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELA 294

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
              E ++HRIGRT RAG  G A +  A E+ +  + I  +++ K++W    ++S   PLE
Sbjct: 295 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPVNSSIVPLE 354


>gi|320580546|gb|EFW94768.1| ATP-dependent RNA helicase [Pichia angusta DL-1]
          Length = 529

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 129/353 (36%), Positives = 197/353 (55%), Gaps = 11/353 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+  PT IQ +  P+ L   D+ GIA TG+GKT S+ LP +  
Sbjct: 98  FDEAGFPDYVLKEVKAQGFPNPTAIQCQGWPMALSGRDMVGIASTGSGKTLSYCLPAIVH 157

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L+ G      P  L+L PTRELA Q+     K+G++  +    + GG+P   Q 
Sbjct: 158 INAQPLLQPGDG----PICLVLAPTRELAVQIQKECSKFGRSSRIRNTCVYGGVPKGQQI 213

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RGA++ I TPGR+LD  + G+  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 214 RDLARGAEICIATPGRLLDMLDSGRTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 273

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT    +Q ++ ++L +  ++ + +    A       +   ++Y K+  L +
Sbjct: 274 DRQTLMWSATWPKSVQTLARDYLNDYIQVNIGSLDLAASHNIKQIIDVCSEYEKRDKLAK 333

Query: 237 QLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L  + QD     I+F + K+    +   +  +G+   AIHG+ +QR R  +LS F+ G 
Sbjct: 334 HLETAMQDPQAKVIVFASTKRTCDEITAYMRSEGWPALAIHGDKEQRERDWVLSEFRSGR 393

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             +MVA+D+AARG+D+  V  V N D+P   E+Y+HRIGRTGRAG  G A T+
Sbjct: 394 SPIMVATDVAARGIDVKGVTTVINHDMPGNVEDYVHRIGRTGRAGEKGTAITM 446


>gi|170046392|ref|XP_001850751.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus]
 gi|167869172|gb|EDS32555.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus]
          Length = 641

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 131/362 (36%), Positives = 209/362 (57%), Gaps = 11/362 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + GL   ++  V  +GY+KPTPIQ   IP+++ + D+   AQTG+GKTA+F+LP++  
Sbjct: 219 FNESGLRDYLLTNVRKSGYLKPTPIQKYAIPIIMDKRDLMACAQTGSGKTAAFLLPIINT 278

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L  +        P  +++ PTRELA Q+++   K+ +   L V +  GG     Q   + 
Sbjct: 279 LLNDNDDMTPGNPFVVVVAPTRELALQISEEARKFARGTILKVVVAYGGTATRHQIDNVN 338

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI----TSLVPF 176
            G  +L+ TPGR+LD  +R  +  + ++ +V+DEADRMLDMGF+P ++ +    T     
Sbjct: 339 NGCHILVATPGRLLDFVDRQAVTFDRVKFVVLDEADRMLDMGFMPAVEKMMNHETMKSKE 398

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALL 235
            RQTL+FSAT   ++Q+++  FL N   + V      +  +E + +  T  Q  KK   L
Sbjct: 399 ERQTLMFSATFPGQIQELAGQFLNNYIFVAVGIVGGASSDVEQNIYEVTKFQKRKK---L 455

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +++L+S D  K  ++F   K+N   L   L +  F   +IHG+  QR R + L +FK G 
Sbjct: 456 EEILESNDP-KGTLVFVETKRNADYLASLLSETKFPTTSIHGDRLQREREEALRDFKSGK 514

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + +++A+ +AARGLDI +V HV N+D+P   ++Y+HRIGRTGR G  G+A +    E+  
Sbjct: 515 MYILIATSVAARGLDIRNVAHVINYDLPKGIDDYVHRIGRTGRVGNKGRATSFFDMENDS 574

Query: 356 HI 357
            I
Sbjct: 575 AI 576


>gi|37527225|ref|NP_930569.1| ATP-dependent RNA helicase SrmB [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786659|emb|CAE15723.1| ATP-dependent RNA helicase [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 445

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 144/378 (38%), Positives = 213/378 (56%), Gaps = 11/378 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+++LP M 
Sbjct: 5   NFSELELDERLLDALNDKGYSRPTAIQAAAIPAAMDGRDVLGSAPTGTGKTAAYLLPAMQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD  +++  + +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQAKEFAAHTHLDIATITGGVAYMNHAEIFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFANDIETIAGETRWRKQT 184

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT+  E ++  +E  L++P  I+   PS         F       + K ALL  LL
Sbjct: 185 MLFSATLEGEAIRDFAERLLEDPVEIDAE-PSRRERKKIQQFYYRADNSAHKTALLCHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  K+ IIF  +++ V  L   L + G     + G + Q  R + +    +G++ ++
Sbjct: 244 KQPDVTKS-IIFVRKRERVHELADKLHQAGIKARFLEGEMVQAKRTEAVKLLNDGSVTVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI D+ HVFNFD+P  A+ Y+HRIGRT RAGR G A TLV   D      
Sbjct: 303 VATDVAARGLDIDDISHVFNFDLPRTADVYLHRIGRTARAGRKGTAITLVEAHD------ 356

Query: 360 IEKLIEKKVDWLNGDLSS 377
              L+ K   +LN  L+S
Sbjct: 357 -HPLLGKISRYLNEPLTS 373


>gi|325923904|ref|ZP_08185503.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
 gi|325545614|gb|EGD16869.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
          Length = 458

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 144/381 (37%), Positives = 213/381 (55%), Gaps = 9/381 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ L LSP +   +   GY   TPIQ +++P +LQ  DV   A TG+GKTA+F L +L 
Sbjct: 3   EFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+    R +    L+L PTRELA QV     K      N+ + +L GG+P   Q   LE
Sbjct: 63  KLDPALTRAQ---ALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 119

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I S     RQ
Sbjct: 120 AHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT  D ++ ++   L++P  I V    +  E I+  F      Y +K A+   LL
Sbjct: 180 SLLFSATFPDIIRTLAREILKDPIEITVEGADNAPE-IDQQFFEVDPTYRQK-AVAGLLL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +     ++ ++FCN +K V  +  SL++ GFS  A+HG+++QR R ++L  F   +  ++
Sbjct: 238 RFNP--ESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+ G A +LVA  +     A
Sbjct: 296 VASDVAARGLDVEDLAAVVNYELPTDTETYRHRIGRTARAGKRGLALSLVASRETGRAQA 355

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           +E    + + W    L++  P
Sbjct: 356 LEAEQGQPLKWSRAPLATARP 376


>gi|68071817|ref|XP_677822.1| RNA helicase [Plasmodium berghei strain ANKA]
 gi|56498080|emb|CAH95521.1| RNA helicase, putative [Plasmodium berghei]
          Length = 499

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 136/375 (36%), Positives = 218/375 (58%), Gaps = 22/375 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L +  +++ ++ + G+ KPT IQ K +PL+ Q+ D+ G+++TG+GKTA F++P   I
Sbjct: 95  FSQLNICEEILQSIQELGWEKPTLIQQKVLPLMFQKRDIIGLSETGSGKTACFIIP---I 151

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++ + + +    LI+ PTREL  Q+A N +  G N  + +  + GG+    Q+  L + 
Sbjct: 152 LQELKLKKQNFFALIISPTRELCIQIAQNAQALGSNLLINICTIFGGVDIVTQSLNLAKK 211

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            +++I TPGRILDH N  K   + N++ LV DEAD++L + F   I  +  ++P  R T 
Sbjct: 212 PNIIISTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSLDFESSINKLLLILPKNRITF 271

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLL 239
           LFSATMT  + K+ +  L+NP +IEV+   ST +T+   + F+    +Y+  C+L     
Sbjct: 272 LFSATMTKSVAKLKKTSLKNPIKIEVSNKYSTVKTLIENYIFLPLKYKYTYLCSLCFYY- 330

Query: 240 QSQDTMKNGIIFCN-----QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
               T KN IIF N     QK N    C +L   G     +HG + Q  R+  L+ FK  
Sbjct: 331 ----TNKNIIIFSNTCATAQKLNF--FCRNL---GLKSICLHGKLTQNQRLSSLNLFKTN 381

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +++++ + ARGLD+ ++  V NFD+ +  E YIHR+GRT RAG+ GK+ T V + D+
Sbjct: 382 KYNILISTQVGARGLDLQNIKIVINFDLCSCKE-YIHRVGRTARAGKTGKSITFVTQYDV 440

Query: 355 KHIDAIEKLIEKKVD 369
           +    IEK + KK+D
Sbjct: 441 ETFLTIEKQLNKKID 455


>gi|322708721|gb|EFZ00298.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Metarhizium
           anisopliae ARSEF 23]
          Length = 1245

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 217/371 (58%), Gaps = 8/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  GL+ + +  + + GY KPT IQ++ IP ++   DV G+A+TG+GKT +F+LPM   
Sbjct: 620 WAQCGLTRQTLDVIDNLGYEKPTTIQMQAIPTLMSGRDVVGVAKTGSGKTVAFLLPMFRH 679

Query: 62  ILEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++   +    P  LI+ PTRELA Q+  + + + K+  L      GG P   Q  +L+
Sbjct: 680 IMDQPPIKDTDGPVGLIMTPTRELATQIHRDCKPFLKSMGLRAVCAYGGAPIRDQIAELK 739

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N+G++  +  +  +V+DEADRM DMGF P +  I + +   
Sbjct: 740 RGAEIIVCTPGRMIDLLAANQGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIFAGMRPD 799

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QT+LFSATM   +  +++  L++P  I V   S  A+ IE   V    + +K   +L+ 
Sbjct: 800 KQTILFSATMPRIIDSLTKKVLKSPVEITVGGRSVVAKEIEQ-IVEVREENTKFLRVLEL 858

Query: 238 L--LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L  L  +D     +IF ++++   +L   L  +G+   +IHG  DQ  R   +S+FK+G 
Sbjct: 859 LGELYDRDEDARALIFVDRQEKADDLLKELMVKGYPCMSIHGGKDQVDRDSTISDFKKGV 918

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + L+VA+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T V  +   
Sbjct: 919 VPLLVATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGVAVTFVTPDQEN 978

Query: 356 HIDAIEKLIEK 366
               I K +E+
Sbjct: 979 CAPGIAKALEQ 989


>gi|322700977|gb|EFY92729.1| ATP-dependent RNA helicase dbp10 [Metarhizium acridum CQMa 102]
          Length = 894

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 34/387 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPLVL R DV G+A+TG+GKT +FV+PM+  
Sbjct: 85  FQAMGLNSNLLKAIARKGFSVPTPIQRKTIPLVLDRKDVVGMARTGSGKTGAFVIPMIEK 144

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     R    R LIL P+RELA Q     +++ +  +L   LL+GG   E Q   +   
Sbjct: 145 LRAHSGRF-GSRALILSPSRELAIQTLKVVKEFARGTDLKAVLLVGGDSLEEQFGYMAAN 203

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 204 PDIVIATPGRFLHLKVEMSLDLSSIKYVVFDEADRLFEMGFATQLTEILHALPPSRQTLL 263

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ-- 240
           FSAT+   L + +   LQ+P  + ++  +  +  +E  F +      K+ ALL  L    
Sbjct: 264 FSATLPASLVEFARAGLQDPSLVRLDAETKVSPDLESAFFSVKGA-EKEGALLHILHDVI 322

Query: 241 ----------SQDTMKNG--------------------IIFCNQKKNVVNLCHSLEKQGF 270
                      QD+ K                      IIF   K +V  L   L++ GF
Sbjct: 323 KMPMGAPENAKQDSEKGSKKRKRGESGSGSGKPTEHSTIIFTATKHHVEYLASVLQRAGF 382

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           SV  ++G++DQ +R   + +F+ G   ++V +D+AARG+DIP + +V N+D P++ + ++
Sbjct: 383 SVSHVYGSLDQTARRNQVEDFRRGKTNILVVTDVAARGIDIPVLANVINYDFPSQPKIFV 442

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           HR+GRT RAG+ G +++LV   D  ++
Sbjct: 443 HRVGRTARAGQRGWSYSLVRDSDAPYL 469


>gi|238791786|ref|ZP_04635423.1| ATP-independent RNA helicase dbpA [Yersinia intermedia ATCC 29909]
 gi|238728890|gb|EEQ20407.1| ATP-independent RNA helicase dbpA [Yersinia intermedia ATCC 29909]
          Length = 460

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 215/369 (58%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L  
Sbjct: 6   FSSLALPTEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLDK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           +  G     + + L+L PTRELA QV+    +  +   N+ +  L GG P   Q   L  
Sbjct: 66  IAVGEF---VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI +H  +  L++++++ILV+DEADRMLDMGF   I ++ +  P  RQTL
Sbjct: 123 APHIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S    + P  +EV+        IE  F  T  +  K+  LL  +L S
Sbjct: 183 LFSATYPVGIERISARVQRQPINVEVDD-GDEVPAIEQVFFETTRE--KRLPLLISVL-S 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + ++FCN KK+  ++  +LE +G SV A+HG+++QR R ++L  F   + +++VA
Sbjct: 239 HYQPSSCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V NF++    E ++HRIGRTGRAG  G A +L   +++    AIE
Sbjct: 299 TDVAARGLDIKDLALVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMSRAHAIE 358

Query: 362 KLIEKKVDW 370
             ++ K+ W
Sbjct: 359 DYLQIKLKW 367


>gi|195054323|ref|XP_001994075.1| GH22875 [Drosophila grimshawi]
 gi|193895945|gb|EDV94811.1| GH22875 [Drosophila grimshawi]
          Length = 799

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 151/388 (38%), Positives = 219/388 (56%), Gaps = 25/388 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ L+  +   V  A Y KPTP+Q   IP+++   D+   AQTG+GKTA+F++P+L  
Sbjct: 295 FDDVQLTEIIRNNVNLARYDKPTPVQKYAIPIIISGRDLMACAQTGSGKTAAFLVPILNQ 354

Query: 62  ILEKGRA-----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           + E G +           R + P  L+L PTRELA Q+ +  +K+     +  A+L GG 
Sbjct: 355 MYEHGLSAPPQNNRQYSRRKQFPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGN 414

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L+RG  +++ TPGR+ D   RGK+ + NI  LV+DEADRMLDMGF P I+ I
Sbjct: 415 NTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRI 474

Query: 171 TSLV--PFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
              +  P T  RQTL+FSAT   ++Q+++ +FL N   + V    ST+E I    +  Y 
Sbjct: 475 VEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTLLWVYD 534

Query: 227 QYSKKCALLQQLLQSQDTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
           Q  K+  LL  L   +D  +       +IF   KK   +L   L +    V +IHG+  Q
Sbjct: 535 Q-DKRSYLLDLLSSIRDGPEYSKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQ 593

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           + R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P   E Y+HRIGRTGR G 
Sbjct: 594 KEREEALRCFRSGDCPILVATAVAARGLDIPHVTHVINFDLPTDVEEYVHRIGRTGRMGN 653

Query: 342 HGKAFTLVAKEDIKHI--DAIEKLIEKK 367
            G A +    ++ ++I  D +E LIE K
Sbjct: 654 LGVATSFFNDKN-RNICSDLLELLIETK 680


>gi|60501849|gb|AAX22124.1| DEAD-box RNA-dependent helicase p68 [Carassius auratus]
          Length = 611

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 134/362 (37%), Positives = 201/362 (55%), Gaps = 13/362 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +      V+  +    +  PTPIQ +  P+ L   D+ GIAQTG+GKT S++LP +  
Sbjct: 98  FHEANFPNYVMDVIGKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVH 157

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  L+L PTRELA QV     +YGK   L    + GG P   Q 
Sbjct: 158 INHQPFLERGEG----PICLVLAPTRELAQQVQQVAAEYGKASRLKSTCIYGGAPKGPQI 213

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +  
Sbjct: 214 RDLERGVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKILDQIRP 273

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKCAL 234
            RQTL++SAT   E+++++E+FL++  +I V     S+    ++   V    +   K   
Sbjct: 274 DRQTLMWSATWPKEVRQLAEDFLKDYVQINVGALQLSANHNILQIVDVCNDGEKEDKLMR 333

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L + + S+   K  IIF   K+   +L  S+ + G+    IHG+  Q+ R  +L+ FK G
Sbjct: 334 LLEEIMSEKENKT-IIFVETKRRCDDLTRSMRRDGWPAMGIHGDKSQQERDWVLNEFKYG 392

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +++A+D+A+RGLD+ D+  V N+D PN +E+YIHRIGRT R+ + G A+T     ++
Sbjct: 393 KAPILIATDVASRGLDVEDIKFVINYDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNM 452

Query: 355 KH 356
           K 
Sbjct: 453 KQ 454


>gi|194760837|ref|XP_001962639.1| GF14338 [Drosophila ananassae]
 gi|190616336|gb|EDV31860.1| GF14338 [Drosophila ananassae]
          Length = 1472

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 131/351 (37%), Positives = 210/351 (59%), Gaps = 10/351 (2%)

Query: 3    FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
            F D GL   V   V+ +GY  PTPIQ  +IP++ +  D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 1059 FEDAGLRTIVTENVIKSGYKVPTPIQKVSIPVINEGRDMMACAQTGSGKTAAFLLPILSK 1118

Query: 62   ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +LE  +   +  P+ +++ PTRELA Q+ +   K+G    L ++++ GG  F+ QN+ + 
Sbjct: 1119 LLEDPQDLEIGKPQAVVVSPTRELAIQIFNEARKFGFESYLKISIVYGGTSFKHQNECIT 1178

Query: 121  RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS--LVPFTR 178
            +G  VLI TPGR+LD  +R  +  N+   +V+DEADRMLDMGF   ++ I +   +    
Sbjct: 1179 KGCHVLIATPGRLLDFVDRTFITFNDTRFVVLDEADRMLDMGFSESMRKIMTHRTMRSEH 1238

Query: 179  QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            QTL+FSAT  +E+Q+++  FL N   + +         ++   +    +++K+  L++ L
Sbjct: 1239 QTLMFSATFPEEIQRLAGEFLNNYVFVTIGVVGGACSDVQQT-IYEVNKFNKRSKLMEIL 1297

Query: 239  LQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             +      NG I+F   K+    L   L +  F   +IHG+  Q  R + L +FK G ++
Sbjct: 1298 RED----ANGTIVFVETKRGADFLASFLSETEFPTTSIHGDRLQSQREQALRDFKTGKMK 1353

Query: 298  LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +++A+ +AARGLDI +V HV NFD+PN   +Y+HRIGRTGR G +G+A + 
Sbjct: 1354 VLIATSVAARGLDIKNVKHVVNFDMPNNIADYVHRIGRTGRVGNNGRATSF 1404


>gi|258617566|gb|ACV83780.1| DEAD box ATP-dependent RNA helicase-like protein [Heliconius
           melpomene]
          Length = 646

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 137/393 (34%), Positives = 218/393 (55%), Gaps = 20/393 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-LT 61
           F +      ++  + + G+ +PT IQ +  P+ L   D+ GIA TG+GKT +++LP  + 
Sbjct: 237 FDEGNFPDHIMNTIKEQGWEEPTGIQAQGWPIALSGRDMVGIASTGSGKTLAYMLPAAVH 296

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+ + R  R   P  LIL PTRELA Q+    + Y  +  +    L GG P   Q + LE
Sbjct: 297 IVHQQRIQRGDGPIALILAPTRELAQQIQSVAQAYSAHGCIRNTCLFGGSPKGPQARDLE 356

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 357 RGVEIVIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 416

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALL 235
           L++SAT   E+Q ++E+FL +  ++ + + + +A     + IE C    + +  K   LL
Sbjct: 417 LMWSATWPKEIQALAEDFLTDYVKVNIGSLNLSANNNIKQIIEVC--EEHEKEVKLTNLL 474

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +++   +D     I+F   KK V ++  ++ + G    AIHG+  Q+ R  +L+ F+ G 
Sbjct: 475 KEIASEKDNKV--IVFVETKKKVDDIARAVRRNGHKALAIHGDKSQQERDAVLTEFRNGA 532

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +++A+D+AARGLD+ DV  V NFD PN +E+YIHRIGRTGR  + G A+T     D +
Sbjct: 533 TTILIATDVAARGLDVEDVKFVVNFDYPNTSEDYIHRIGRTGRCQQSGTAYTYFTSGDAR 592

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
              ++  ++ +         +  NPP +  D+A
Sbjct: 593 QARSLLAVLRE---------TGQNPPAKLNDMA 616


>gi|256083681|ref|XP_002578069.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238663419|emb|CAZ34307.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 944

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 154/429 (35%), Positives = 233/429 (54%), Gaps = 26/429 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   +   V  A Y+ PTP+Q   +P++  + D+   AQTG+GKTA+F+LP+L 
Sbjct: 160 SFNDVELHQIIKENVTRAQYIHPTPVQKYALPIIAAKRDLMACAQTGSGKTAAFLLPILN 219

Query: 62  IL------EKGRARVR----MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
           +L      E   A        P  LIL PTREL++Q+ D   K+    N+   ++ GG  
Sbjct: 220 MLFEDNHCENSDASALSCAVCPLALILAPTRELSSQIYDEARKFSYRSNIKPCVVYGGAS 279

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
             AQ ++L  G ++L+ TPGR++D  +RGK+ +  I   V+DEADRMLDMGF P I+ I 
Sbjct: 280 ILAQIRELSHGCNLLVATPGRLVDMVSRGKVSLEQIRFFVLDEADRMLDMGFEPQIRRIV 339

Query: 172 ---SLVPF-TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATY 225
               + P   RQTL+FSAT   E+Q ++ +FL +   + V    ST E I  E   VA  
Sbjct: 340 EQHGMPPAGKRQTLMFSATFPKEIQTLARDFLHSYIFLAVGRVGSTNENIIQEVLNVAD- 398

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
                K  +L +LLQ +D     ++F   K+    L   L +  F V +IHG+  Q  R 
Sbjct: 399 ---KDKPDMLVRLLQGKDPDGLALVFVETKRGADVLAKFLCQLNFPVTSIHGDRPQTERE 455

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L +F+ G   +++A+ +AARGLDIP+V HV NFD+P+  E Y+HRIGRTGR G+ G A
Sbjct: 456 HALQSFRSGRTPILIATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRMGQPGSA 515

Query: 346 FTLVAKEDIKHI-DAIEKLIEKK---VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            +  ++++   + D +E L E K     WL   ++  + P  + +   +++  K N +  
Sbjct: 516 TSFFSEKNQNVVRDLVELLRESKQAVPPWLEARVAYPSGPASRRNKNINSNVNKKNRV-- 573

Query: 402 KSTGFDRRK 410
               FD R+
Sbjct: 574 NYCSFDYRQ 582


>gi|104782944|ref|YP_609442.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95111931|emb|CAK16656.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           entomophila L48]
          Length = 454

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 137/370 (37%), Positives = 215/370 (58%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+   L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 15  FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 74

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    RV + R LIL PTRELA Q     + + +   +   L+ GG  F+ Q   L +
Sbjct: 75  LVDLSGPRVEI-RALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRK 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DVLI TPGR+L+  N G L ++++++L++DEADRMLDMGF   ++ +        QTL
Sbjct: 134 VPDVLIGTPGRLLEQLNAGNLDLSHVKVLILDEADRMLDMGFAEDMERLCKECENREQTL 193

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAE-TIEHCFVATYAQYSKKCALLQQLL 239
           LFSAT     L+ +    L++P+ + +N+ S  AE T +    A + Q+ ++     Q L
Sbjct: 194 LFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIV---QWL 250

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +T +  IIF N +     +   L  +      +HG  DQ+ R   +  FK+G  +++
Sbjct: 251 LANETYQKAIIFTNTRALADRIYGHLVAKEVKAFVLHGEKDQKDRKLAIDRFKDGGSKVL 310

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + +
Sbjct: 311 VATDVAARGLDIDGLDLVINFDMPRSGDEYVHRIGRTGRAGGEGLAISLITHNDWNLMSS 370

Query: 360 IEKLIEKKVD 369
           IE+ ++++ +
Sbjct: 371 IERYLKQQFE 380


>gi|328780921|ref|XP_394723.3| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
           mellifera]
          Length = 726

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 135/379 (35%), Positives = 210/379 (55%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F +      V+  +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP  + 
Sbjct: 108 FEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPATVH 167

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I  + R +R   P  LIL PTRELA Q+      +G +  +    + GG P   Q + LE
Sbjct: 168 INHQPRLSRGDGPIVLILAPTRELAQQIQSVARDFGSSSCIRNTCIFGGSPKGPQARDLE 227

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 228 RGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 287

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+Q ++E+FL +  +I + + +  A       V    ++ K+  L   L +
Sbjct: 288 LMWSATWPKEVQALAEDFLSDYIQINIGSLTLAANHNIRQIVEICQEHEKEMKLSNLLRE 347

Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +D     IIF   KK V ++  +++++G+   +IHG+  Q  R  +LS F+ G   ++
Sbjct: 348 IGKDRGSKMIIFVETKKKVDDITKAIKREGWPAISIHGDKSQPERDYVLSEFRNGKTMIL 407

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV +V NFD PN +E+YIHRIGRTGR    G A+      + +    
Sbjct: 408 VATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNNARQAKE 467

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +  ++E+    +N  L+ L
Sbjct: 468 LISVLEEAGQAINPQLADL 486


>gi|116196072|ref|XP_001223848.1| hypothetical protein CHGG_04634 [Chaetomium globosum CBS 148.51]
 gi|118575168|sp|Q2H0R2|DBP10_CHAGB RecName: Full=ATP-dependent RNA helicase DBP10
 gi|88180547|gb|EAQ88015.1| hypothetical protein CHGG_04634 [Chaetomium globosum CBS 148.51]
          Length = 762

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 137/381 (35%), Positives = 208/381 (54%), Gaps = 36/381 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPLVL+R DV G+A+TG+GKTA+FV+PM+  
Sbjct: 88  FQAMGLNSNLLRAISRKGFSVPTPIQRKTIPLVLERRDVVGMARTGSGKTAAFVIPMIER 147

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   ARV   R +I+ P+RELA Q     ++ GK  +L   LL+GG   E Q   +   
Sbjct: 148 LKAHSARV-GARAIIMSPSRELALQTLKVVKELGKGTDLKTVLLVGGDSLEEQFGLMAAN 206

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L ++++  +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 207 PDIIIATPGRFLHLKVEMSLNLSSVRYVVFDEADRLFEMGFAAQLTEILHALPPSRQTLL 266

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
           FSAT+   L + +   LQ P  I ++  +  +  +E  F +      K+ ALL  L    
Sbjct: 267 FSATLPSSLVEFARAGLQEPSLIRLDAETKVSPDLESAFFSVKGG-EKEGALLHILHDVI 325

Query: 239 ------------------------------LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
                                          + + T  + IIF   K +V  + H L   
Sbjct: 326 KMPLGVPEGIEEETDEQQARKRKRDSERRNRKEKPTEHSTIIFTATKHHVEYIAHLLRHA 385

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           GFSV  I+G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D P + + 
Sbjct: 386 GFSVSYIYGSLDQTARKIQVDNFRRGRTNILVVTDVAARGIDIPVLANVINYDFPPQPKI 445

Query: 329 YIHRIGRTGRAGRHGKAFTLV 349
           ++HR+GRT RAG+ G A+ L+
Sbjct: 446 FVHRVGRTARAGQRGWAYALL 466


>gi|315126555|ref|YP_004068558.1| ATP-dependent RNA helicase, DEAD box [Pseudoalteromonas sp. SM9913]
 gi|315015069|gb|ADT68407.1| ATP-dependent RNA helicase, DEAD box [Pseudoalteromonas sp. SM9913]
          Length = 440

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 135/374 (36%), Positives = 209/374 (55%), Gaps = 7/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLG+  ++   +   G  +PT IQ   +P  L  HD+   ++TG+GKT +F+LP +
Sbjct: 1   MHFTDLGIDTRLETQLAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAV 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + K +A   R PR LI+ PTRELA QV           N+    ++GG  F  Q K L
Sbjct: 61  QRVMKQKALSKRDPRVLIVAPTRELATQVFTQLRLLIAGTNIKAVKILGGENFNDQIKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TR 178
                 ++ TPGR+ DH  +  L ++ +E+L+ DEADR+LD+GF   ++ I  L     R
Sbjct: 121 RNDPHFVVATPGRLADHLKQRSLQLSGLELLIFDEADRILDLGFTDQLKLINELADHRLR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQ 236
           QTLLFSAT+   ++  +S N L+ PK+I ++  +     I+   ++A +  +  K ALL+
Sbjct: 181 QTLLFSATLDHAQVDALSRNLLKKPKQIMLSAANEQHSDIKQTLYLADHLDH--KEALLE 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L +QD +   IIF   + +   L  SL  +GF   A+ G++ Q  R+ I+  F     
Sbjct: 239 HFL-NQDNVGQCIIFTATRADTSRLSESLNSKGFKSVALAGDLTQSKRLDIMDAFSRENF 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++ +D+A+RGLD+  V HV NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D   
Sbjct: 298 KILITTDVASRGLDLLSVTHVINFDLPKHAEEYVHRIGRTGRAGFKGNALSLVGPKDWAS 357

Query: 357 IDAIEKLIEKKVDW 370
             AI+  +  ++ +
Sbjct: 358 YLAIKSFLNDELSF 371


>gi|300926734|ref|ZP_07142509.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|301326919|ref|ZP_07220211.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
 gi|300417310|gb|EFK00621.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|300846390|gb|EFK74150.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
          Length = 457

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 138/377 (36%), Positives = 217/377 (57%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+L H  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLAHLQKGTISLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W     +S   PLE
Sbjct: 363 KLNWQTPPANSSILPLE 379


>gi|147774689|emb|CAN74342.1| hypothetical protein VITISV_005473 [Vitis vinifera]
          Length = 661

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 196/373 (52%), Gaps = 43/373 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  LSP+++ AV  AGY  P+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPMLT 
Sbjct: 261 WVESKLSPELLKAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTY 320

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + +            P  +++ PTRELA Q+ D   K+     + V  +           
Sbjct: 321 ISRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSI----------- 369

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  V+I TPGR++D   R   ++N    +V+DEADRM+DMGF P +  +   +P +
Sbjct: 370 -------VVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 422

Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
                            R T +FSATM   +++++  +L+NP  + + T     + I   
Sbjct: 423 NLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQH 482

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
            +      S+K   LQ+LL      K  I+F N KK+   L   L+K G+ V  +HG   
Sbjct: 483 VIMVKG--SEKMPKLQKLLDELGD-KTAIVFINTKKSTDTLAKGLDKAGYRVTTLHGGKS 539

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q  R   L  F+     ++VA+D+A RG+DIPDV HV N+D+P   E Y HRIGRTGRAG
Sbjct: 540 QEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAG 599

Query: 341 RHGKAFTLVAKED 353
           + G A T +   D
Sbjct: 600 KTGVATTFLTLHD 612


>gi|321473370|gb|EFX84337.1| hypothetical protein DAPPUDRAFT_209410 [Daphnia pulex]
          Length = 592

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 144/370 (38%), Positives = 204/370 (55%), Gaps = 19/370 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ LS  ++ A+    +V PTPIQ  TIP+ L   DVCG A TGTGKTA+F+LP+L  
Sbjct: 18  FHEMNLSRPLMKAIASMNFVHPTPIQSATIPVALLGRDVCGCAATGTGKTAAFMLPVLER 77

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L          R L+L PTREL  QV    ++  +  N+ + L IGG+  + Q K L   
Sbjct: 78  LMYRPKVSATTRVLVLVPTRELGVQVYQVSKQLSQFTNIQIGLSIGGLDLKVQEKVLRGN 137

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR++DH  N     +  I++L++DEADRMLD  FI  ++ I       RQT+
Sbjct: 138 PDVVIATPGRLIDHLRNTPSFSLEAIDVLILDEADRMLDEFFIEQVKEIIMQCGRKRQTM 197

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK-----CALLQ 236
           LFSATM++E++ ++   L  P ++ VN     A  +   FV     +        CAL+ 
Sbjct: 198 LFSATMSNEVRDLAAVSLNKPIKVFVNNNRDVAFNLRQEFVRIRPNHEGDREAILCALVC 257

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ----GFSVCAIHGNIDQRSRMKILSNFK 292
           +      T +N  +   Q K    LCH L  Q    G  V  +HGN+ Q  R++ L  FK
Sbjct: 258 R------TFRNHCMVFVQTKM---LCHRLHVQLGLLGIRVGELHGNLSQPQRLEALRKFK 308

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           E  I ++V++D+AARGLDIP V  V N+ +P   E YIHR+GRT RAGR G + +L  + 
Sbjct: 309 EEDIDILVSTDVAARGLDIPGVQTVINYTMPPTIERYIHRVGRTARAGRSGVSVSLAGEG 368

Query: 353 DIKHIDAIEK 362
           + K +  I K
Sbjct: 369 ERKVVKEIVK 378


>gi|59711051|ref|YP_203827.1| ATP-dependent RNA helicase SrmB [Vibrio fischeri ES114]
 gi|59479152|gb|AAW84939.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 413

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 133/366 (36%), Positives = 203/366 (55%), Gaps = 5/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL LSP ++ A+ +  Y +PT +Q  TIP  L+  D+   A TGTGK+A+F+LP L  
Sbjct: 5   FADLDLSPNLLRALEEIDYQRPTQVQAMTIPEALEGKDILASAPTGTGKSAAFLLPALQH 64

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+    R   P R LIL PTRELA QVAD   +  K     V  + GGI ++     L  
Sbjct: 65  LDDFPRREPGPARILILTPTRELAIQVADEARQLAKYTRHKVFTITGGISYQDHADILAT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR++++    +     IE L++DEADRMLDMGF P +  ++    + +QT 
Sbjct: 125 TQDIVVATPGRLMEYIEAERFDCRAIETLILDEADRMLDMGFGPVVDRLSKECRWRKQTF 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+    ++  + + L  P  I         + I   +       + K  LL+ +L 
Sbjct: 185 LFSATLEGRGVEGFTADLLNEPAEINAEPSRRERKKITQWY-HRADNMAHKIDLLKNILT 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   +  I+F   ++ +  L   LE        I G + Q SR   +S F++GT+ +++
Sbjct: 244 EQ--AERSIVFVKTRERLAELRGHLETAKIPCAWIQGEMAQESRNNAISRFRDGTVNVLI 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+PDV HV NFD+P  A+ Y+HRIGRT RAG+ G A +L+   D   ++ +
Sbjct: 302 ATDVAARGIDLPDVSHVINFDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQPMMERV 361

Query: 361 EKLIEK 366
            + I++
Sbjct: 362 GRYIKE 367


>gi|119175420|ref|XP_001239942.1| hypothetical protein CIMG_09563 [Coccidioides immitis RS]
 gi|118582048|sp|Q1DJF0|DED1_COCIM RecName: Full=ATP-dependent RNA helicase DED1
          Length = 659

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 138/361 (38%), Positives = 205/361 (56%), Gaps = 23/361 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 177 FTNPPLDDHLISNIKLATYKTPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQ 236

Query: 63  LEK----------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
             K                GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 237 AFKNGPSAVPTQNANQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVV 296

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 297 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQ 356

Query: 167 IQNITS---LVPFT-RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I     + P   RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 357 IRRIVEGEDMPPVNGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQ--K 414

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             Y + + K ++L  +L +  T    +IF   K+   +L   L  Q F   AIHG+  QR
Sbjct: 415 VEYVEDADKRSVLLDILHTHGTGLT-LIFVETKRMADSLSEFLINQNFPATAIHGDRTQR 473

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 474 ERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 533

Query: 343 G 343
           G
Sbjct: 534 G 534


>gi|169602158|ref|XP_001794501.1| hypothetical protein SNOG_03958 [Phaeosphaeria nodorum SN15]
 gi|160706094|gb|EAT89163.2| hypothetical protein SNOG_03958 [Phaeosphaeria nodorum SN15]
          Length = 623

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 136/345 (39%), Positives = 201/345 (58%), Gaps = 21/345 (6%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK------------- 65
           +GY  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L    +             
Sbjct: 146 SGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQAFQNGPSPPPTAQAGG 205

Query: 66  -GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
            GR R   P +LIL PTREL +Q+ D   K+     +   ++ GG    +Q +++ERG D
Sbjct: 206 YGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 265

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--VPFT--RQT 180
           +L+ TPGR++D   RG++ + +I+ LV+DEADRMLDMGF P I+ I     +P T  RQT
Sbjct: 266 LLVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPTAGRQT 325

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT   ++Q ++ +FL+    + V    ST+E I       Y + + K ++L  +L 
Sbjct: 326 LMFSATFPRDIQMLARDFLKEYIFLSVGRVGSTSENITQKI--EYVEDADKRSVLLDILH 383

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +     + +IF   K+   +L   L  QGF   +IHG+  QR R K L  F+ G   ++V
Sbjct: 384 THGAGLS-LIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRSGRCPILV 442

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           A+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G A
Sbjct: 443 ATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIA 487


>gi|73973757|ref|XP_853740.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 43
           [Canis familiaris]
          Length = 646

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 137/361 (37%), Positives = 213/361 (59%), Gaps = 7/361 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG--- 66
           P+V+     AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT S+++P    L+     
Sbjct: 249 PEVMENFKRAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLSYLMPGFIHLDSQPVI 308

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTRELA QV     KY     L    + GG     Q + L++G D++
Sbjct: 309 REKRNGPGMLVLTPTRELALQVEAECSKYSYK-GLKSVCIYGGGDRNGQIQDLKKGVDII 367

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + +I  LV+DEAD+MLDMGF P I  I   V   RQT++ SAT
Sbjct: 368 IATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTIMTSAT 427

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
               ++++++++L+ P  + V T    A  T++   + T  +  +K + +Q+ L+S  + 
Sbjct: 428 WPYAVRRLAQSYLKAPMIVYVGTLDLVAVSTVKQNIIVTTEE--EKRSHIQRFLESISSQ 485

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F ++K    +L   L  Q  SV ++HGN +Q  R + L NFK G +++++A+DLA
Sbjct: 486 DKVIVFVSRKAIADHLSSDLILQHVSVESLHGNREQCDRERALENFKTGKVRILIATDLA 545

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLD+ D+ HV+N+D P   E Y+HR+GRTGRAGR G + TL+ + D +    +  ++E
Sbjct: 546 SRGLDVNDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGISITLITRNDWRVAGELINILE 605

Query: 366 K 366
           +
Sbjct: 606 R 606


>gi|291407215|ref|XP_002720005.1| PREDICTED: CG7878-like [Oryctolagus cuniculus]
          Length = 635

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 132/361 (36%), Positives = 212/361 (58%), Gaps = 7/361 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK---G 66
           P+++  +  A + KPTPIQ +  P++LQ  D+ G+AQTGTGKT S+++P    L+     
Sbjct: 239 PELMRNIKKASFQKPTPIQSQAWPVILQGIDLIGVAQTGTGKTLSYLMPGFIHLDSQPTS 298

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R     P  L+L PTRELA QV     KY        + + GG     Q + + +G D++
Sbjct: 299 REERNGPGMLVLTPTRELALQVESECSKYSYK-GFKSSCIYGGGNRRGQIEDIAKGVDII 357

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + +I  LV+DEAD+MLD+GF   I  I   V   RQT++ SAT
Sbjct: 358 IATPGRLNDLQLNNHVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTVMTSAT 417

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
             D +++++ ++L++P  + V T    A  T++   + T  +  +K AL+Q+ L++    
Sbjct: 418 WPDAIRRLAHSYLKDPMMVYVGTLDLVAVSTVQQNVIVTTEE--EKRALIQEFLENMTPR 475

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F ++K    +L   L  QG  + ++HG+ +Q  R + L +F+ G +++++A+DLA
Sbjct: 476 DKVIVFVSRKITADDLASDLGIQGIPIESLHGDREQSDREQALEDFRTGKVKILIATDLA 535

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLD+ D+ HV+N+D P   E Y+HRIGRTGRAG+ G + TLV   D K  D + K++E
Sbjct: 536 SRGLDVNDITHVYNYDFPRNIEEYVHRIGRTGRAGKVGTSITLVTPNDAKIADELIKILE 595

Query: 366 K 366
           +
Sbjct: 596 R 596


>gi|325001026|ref|ZP_08122138.1| DEAD/DEAH box helicase domain protein [Pseudonocardia sp. P1]
          Length = 416

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 130/360 (36%), Positives = 191/360 (53%), Gaps = 5/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL   +V ++   G+  P P+Q  T+P  L   D+ G  QTG+GKT +F L +L  
Sbjct: 6   FAELGLPEALVKSLAAQGFTAPFPVQAATLPDTLAGRDLLGRGQTGSGKTLAFGLALLAR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +   RAR   P  L+L PTRELA QV D         NL V  ++GG+    Q  +L RG
Sbjct: 66  IAGDRARSTAPLGLVLVPTRELAGQVVDVLTPLAAAVNLRVTAVVGGLSMNKQVAELRRG 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+ DH  +G   ++ + I  +DEADRM DMGF+P ++ I    P   Q LL
Sbjct: 126 IDLLVATPGRLTDHLQQGTCDLSEVTITALDEADRMADMGFLPQVRGILDRTPSDGQRLL 185

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  E+  +    L +P    V  P+++ +T+EH  V    +  +   + +   +  
Sbjct: 186 FSATLDGEVDTLVRRHLTDPVTRSVAPPTASVDTMEH-HVLVVGKDDRSRVIAEIAAREG 244

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T    I+F   K     +   L +QG +   +HG   Q  R + L  F+ G + +++A+
Sbjct: 245 RT----IMFVRTKHGADRMVRVLRRQGVAAGPLHGGRSQNQRNRALDEFRTGEVPVLIAT 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+ I DVG V + D P   + Y+HR GRT RAG  G   TL A E    +D + K
Sbjct: 301 DVAARGIHIDDVGLVVHVDPPADPKAYLHRAGRTARAGEEGVVVTLSAPEQRAEVDLLTK 360


>gi|91792542|ref|YP_562193.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91714544|gb|ABE54470.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 465

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 156/435 (35%), Positives = 237/435 (54%), Gaps = 23/435 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGL+  +V A L    V  T IQ   IP  L+  DV  +AQTG+GKT +F L +L
Sbjct: 30  VSFSQLGLTKALVTA-LPKALVSATDIQRLAIPAGLKGKDVLALAQTGSGKTLAFGLVIL 88

Query: 61  TIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L     EK  A+ + P  L++ PTRELA QV           NLT A++ GG   + Q
Sbjct: 89  EKLLLQAKEKSVAQDK-PSALVIVPTRELAQQVHHELNTVAMKLNLTSAIVCGGADLDKQ 147

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L +G  +LI TPGR+L       + +++I+ LV+DEADR+L+MGF P IQ I + +P
Sbjct: 148 IDALAQGPQLLIATPGRLLALVQEKAVSLSDIKHLVLDEADRLLEMGFWPDIQKIIAFIP 207

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSK---- 230
              Q LLFSAT+   L++++++ L  P+RIE    S+  AE  E  ++      ++    
Sbjct: 208 ANCQKLLFSATLPVPLRELADSLLYKPQRIEAKAASTQVAEIEERAYLVNKGSKAQALIA 267

Query: 231 --KCALLQQLLQSQDTMK----NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
             K A L+Q    Q  +K      ++F N K +  +L   L K G +  A+HG+ +Q  R
Sbjct: 268 LLKDAPLKQAGNKQTGIKQPSLQTLVFINGKDDADSLAKKLNKAGLNAKALHGDKEQNIR 327

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + L+ FK+GT+ ++VA+DL ARG+ + ++  V NF +P     Y+HRIGRTGRAG  G 
Sbjct: 328 EQTLAEFKQGTVTVLVATDLLARGIHLSELPQVINFALPESGATYVHRIGRTGRAGAKGL 387

Query: 345 AFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           A +LV   + ++++AIE   ++  ++D L G   +  P  E    A+H    K  P  ++
Sbjct: 388 AISLVCHGESQYLEAIEAFTQRPLRLDALAGFPVTDKPAPETAANARHTDKPKRAPRDKQ 447

Query: 403 STGFDRRKKNYSSQK 417
           +   +RR  N  S K
Sbjct: 448 A---NRRSMNKKSIK 459


>gi|328779178|ref|XP_623193.3| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Apis
           mellifera]
          Length = 588

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 136/367 (37%), Positives = 207/367 (56%), Gaps = 4/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +    P V+  +   GY +PT IQ +  P+ L   D+  IAQTG+GKT  +VLP +  
Sbjct: 115 FEEGNFPPYVLEEIHKQGYSQPTAIQAQGWPIALSGRDLVAIAQTGSGKTLGYVLPAIVH 174

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+ + R +    P  LIL PTRELA Q+ +    +G+   +    + GG P   Q   LE
Sbjct: 175 IIHQPRLSNGDGPIALILAPTRELAQQIQEVANCFGEAAGVRNTCIFGGAPKGPQAHDLE 234

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 235 RGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 294

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E++ ++E+FL +   + + + + +A       V    ++ K   L + L +
Sbjct: 295 LMWSATWPKEVRALAEDFLSDYMHLNIGSLTLSANHNIIQIVDVCQEFEKDLKLYRLLQE 354

Query: 241 SQDTMKN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +  +N  IIF   K+ V ++  ++ + G+   +IHG+ +Q+ R  +L  FK G   ++
Sbjct: 355 IGNEKENKTIIFVETKRKVDDITRNIRRDGWQALSIHGDKNQQERDHVLQEFKSGRAPIL 414

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI-D 358
           VA+D+AARGLD+ DV +V NFD P+ +E+YIHRIGRTGR  + G A+      ++KH  D
Sbjct: 415 VATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGRRRQTGTAYAFFTSHNMKHAGD 474

Query: 359 AIEKLIE 365
            IE L E
Sbjct: 475 LIEVLRE 481


>gi|111225403|ref|YP_716197.1| ATP-dependent RNA helicase-like protein [Frankia alni ACN14a]
 gi|111152935|emb|CAJ64683.1| DEAD-box protein family; ATP-dependent RNA helicase-like protein
           [Frankia alni ACN14a]
          Length = 532

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 135/383 (35%), Positives = 204/383 (53%), Gaps = 18/383 (4%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEKGRARVRMPRTLILEPTREL 84
           PIQ  T+PL L R+D+ G A+TGTGKT +F +P++ T+L         P+ L++ PTREL
Sbjct: 5   PIQELTLPLALARNDIIGQARTGTGKTLAFGIPIVQTVLAASEGADGRPQALVVVPTREL 64

Query: 85  AAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLM 144
             QV  +  + G    L V  + GG  +E Q   L  G D+++ TPGR+LD   +  L +
Sbjct: 65  CVQVTSDVTRAGAGRGLRVLSVYGGRAYEPQLTALRAGVDIVVGTPGRLLDLARQRVLDL 124

Query: 145 NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKR 204
             +  LV+DEAD MLD+GF+P ++ I + +P +RQT+LFSATM   +  ++  F+Q P  
Sbjct: 125 AAVRTLVLDEADEMLDLGFLPDVERIMAQLPTSRQTMLFSATMPGPVISLARRFMQRPVH 184

Query: 205 IEVNTPSST---AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNL 261
           +    P  T     T +H F    A    K  +L ++LQ+       ++F   ++    +
Sbjct: 185 VRAEQPDETRTVPTTHQHVF---RAHALDKMEVLARVLQAGG-RGLAMVFVRTRRTADKV 240

Query: 262 CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321
              L+K+GF+  A+HG++ Q  R + L  F+ G + ++VA+D+AARG+DI  V HV N+ 
Sbjct: 241 AEDLDKRGFAAAAVHGDLGQGQREQALRAFRAGKVDVLVATDVAARGIDISGVTHVVNYQ 300

Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
            P     Y+HRIGRTGRAG  G A T V  +D+     + K +    D           P
Sbjct: 301 CPEDENVYLHRIGRTGRAGESGVAVTFVDWDDLPRWTLVNKALALPFDG----------P 350

Query: 382 LEKIDIAQHNHARKNNPIPQKST 404
           LE    + H +     P   K T
Sbjct: 351 LETYSTSPHLYEALGIPPEAKGT 373


>gi|156119497|ref|NP_001095245.1| putative ATP-dependent RNA helicase an3 [Xenopus laevis]
 gi|113825|sp|P24346|DDX3_XENLA RecName: Full=Putative ATP-dependent RNA helicase an3
 gi|65060|emb|CAA40605.1| ATP dependent RNA helicase [Xenopus laevis]
          Length = 697

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 220/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ +   ++  +    Y +PTP+Q   IP+++++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 223 FHDVTMGEIIMGNIQLTRYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPILSQ 282

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 283 IYADGPGDAMKHLQENGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVY 342

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 343 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 402

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   RQT++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 403 RRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVV- 461

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + +   K + L  LL +       ++F   KK    L   L  +G++  +IHG+  QR 
Sbjct: 462 -WVEEMDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRD 520

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 521 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 580

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   +++I    D ++ L+E K +   WL
Sbjct: 581 LATSFFNEKNINITKDLLDLLVEAKQEVPSWL 612


>gi|194227826|ref|XP_001491482.2| PREDICTED: similar to ATP-dependent RNA helicase DDX3X (DEAD box
           protein 3, X-chromosomal) (Helicase-like protein 2)
           (HLP2) (DEAD box, X isoform) [Equus caballus]
          Length = 762

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 220/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 282 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 341

Query: 63  L-------------EKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
           +             E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 342 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 401

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 402 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 461

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 462 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 520

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + S K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 521 -WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 579

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 580 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 639

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 640 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 671


>gi|224135925|ref|XP_002322195.1| predicted protein [Populus trichocarpa]
 gi|222869191|gb|EEF06322.1| predicted protein [Populus trichocarpa]
          Length = 450

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 211/368 (57%), Gaps = 15/368 (4%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-----PR 74
           G+V+PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP    +    A+ R+     P 
Sbjct: 87  GFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAFVHVA---AQPRLVHGDGPI 143

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTRELA Q+ +   K+G   N+    + GG P   Q + L+RG +++I TPGR++
Sbjct: 144 VLVLAPTRELAVQIQEEALKFGSKANIRSTCIYGGAPKGPQIRDLQRGVEIVIATPGRLI 203

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D      + +  +  LV+DEADRMLDMGF P I+ I S +   RQTL +SAT   E++ +
Sbjct: 204 DMLGAQHVNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVEAL 263

Query: 195 SENFLQNPKRIEVNTPSSTA-ETIEHC--FVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
           + +FL NP ++ + +    A ++I+     +    +Y +   LL++++     +    IF
Sbjct: 264 ARHFLHNPYKVIIGSQDLKANQSIKQVVEVMMDLEKYKRLIKLLKEVMDGSRIL----IF 319

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
              KK    +   L   G++  +IHG+ +Q  R  +L+ FK G   +M A+D+AARGLD+
Sbjct: 320 METKKGCDQVTRQLRMDGWAALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDV 379

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
            D+  V N+D P+  E+Y+HRIGRTGRAG  G A T   + + K    + K++++    +
Sbjct: 380 KDIKCVVNYDFPSSLEDYVHRIGRTGRAGARGTALTFFTESNAKFARDLIKILQEAGQIV 439

Query: 372 NGDLSSLN 379
              LS++ 
Sbjct: 440 PPSLSAMT 447


>gi|198425972|ref|XP_002127372.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           [Ciona intestinalis]
          Length = 790

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 145/415 (34%), Positives = 219/415 (52%), Gaps = 42/415 (10%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL---- 63
           L P++V  +   GY  PTPIQ + IP+     D+ G+A+TG+GKTA+F++P+L  +    
Sbjct: 369 LPPEIVEVIHRIGYKDPTPIQRQAIPIGFLNRDIIGVAETGSGKTAAFLIPLLAWITSLP 428

Query: 64  --EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             E+     + P  LIL PTRELA Q+ +   K+GK   +    +IGG+  E Q  KL  
Sbjct: 429 KIERLEDADKGPYALILAPTRELAQQIEEETIKFGKELGIRTVAVIGGLSREDQGFKLRM 488

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT---- 177
           G +++I TPGR++D      ++++    +V+DEADRM+DMGF P +Q I   +P T    
Sbjct: 489 GCEIVIATPGRLIDVLENRYIVLSQCTYVVLDEADRMIDMGFEPDVQKILDHMPVTNQKP 548

Query: 178 ---------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
                                RQT++F+ATM   +++++ ++L+ P  + + +     E 
Sbjct: 549 DDESMEDKIIMKSNFLTKHKYRQTVMFTATMPVAVERLARSYLRRPAIVYIGSAGKPIER 608

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
           ++   V    +  K+  LL  L   +      I+F NQKK    L  SLEK G++   +H
Sbjct: 609 VKQ-IVYLVKENEKRKKLLGLL--EKGITPPVIVFVNQKKGCDVLAKSLEKMGYNSTTLH 665

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G   Q  R   LS  K G+  ++VA+D+A RG+DI DV  + NFD+    E+Y HRIGRT
Sbjct: 666 GGKGQEHRELALSGLKNGSKDILVATDVAGRGIDIQDVTLIINFDMAKNIEDYTHRIGRT 725

Query: 337 GRAGRHGKAFTLVAKEDIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           GRAG+ G A T + + D     D  + LIE  V       SS  P L++   AQH
Sbjct: 726 GRAGKTGTAVTFLTQSDSAVFYDLRQALIESPV-------SSCPPELDRHPEAQH 773


>gi|212722850|ref|NP_001131651.1| hypothetical protein LOC100193011 [Zea mays]
 gi|194692160|gb|ACF80164.1| unknown [Zea mays]
          Length = 455

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 135/368 (36%), Positives = 214/368 (58%), Gaps = 4/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+  ++V A    G+ +PT IQ + IP  LQ  D+  +AQTG+GKT +F LP+L  
Sbjct: 26  FAELGICAELVEACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTGAFALPILQE 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   R   +     +L PTRELA Q+A+ FE  G    L  ++L+GG+    Q   + + 
Sbjct: 86  LLSNRQAEQSFFACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSIGKR 145

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++ TPGR+LDH    K   +  I+ LV+DEAD++L++ F   + +I S +P  R+T 
Sbjct: 146 PHIVVGTPGRLLDHLTETKGFSLKKIKYLVLDEADKLLNVEFEKSLDDILSEMPKDRRTF 205

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT ++ K+    L+NP ++EV++  ST ++++  F    A   K C LL  L + 
Sbjct: 206 LFSATMTKKVNKLQRACLRNPAKVEVSSKYSTVDSLKQEFYFVPAD-DKDCYLLHVLNER 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            ++M   +IF    ++   L   L   G    +I G + Q  R+  L+ FK     +++ 
Sbjct: 265 LESMI--MIFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKAKDCNILIC 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V  V N+D+P  +++Y+HR+GRT RAGR G A +LV + + +    IE
Sbjct: 323 TDVASRGLDIQGVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVNQYEAQWFVLIE 382

Query: 362 KLIEKKVD 369
           +L+ KK+D
Sbjct: 383 QLLGKKID 390


>gi|145974737|gb|ABQ00072.1| PL10A [Fenneropenaeus chinensis]
          Length = 660

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 150/409 (36%), Positives = 222/409 (54%), Gaps = 42/409 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FAD+ L+  +   +  A Y +PTP+Q   +P +L + D+   AQTG+GKTA+F++P+L  
Sbjct: 221 FADIKLTEIIKQNISMARYDRPTPVQKYALPFILAKRDLMACAQTGSGKTAAFLVPILNQ 280

Query: 62  ILEKGRARVR----------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
           I E+G  +V+           P +LIL PTRELA Q+ +   K+     +   ++ GG  
Sbjct: 281 IYEQGPVQVKNNNPRGRNKQYPLSLILAPTRELATQIYEEARKFSYRARVRPCVVYGGAD 340

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
             +Q + L RG  +L+ TPGR+ D  +RGK+ ++  + LV+DEADRMLDMGF P I+ I 
Sbjct: 341 VVSQMRDLSRGCHLLVATPGRLADMIDRGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIV 400

Query: 172 SL--VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
               +P T  RQTL+FSAT   E+Q+++++FL N   + V    ST+E I    V  +  
Sbjct: 401 EEDNMPPTGQRQTLMFSATFPKEIQRLAQDFLDNYIFLAVGRVGSTSENITQKIV--WVS 458

Query: 228 YSKKCALLQQLLQS-----------QDTMKNGI----------IFCNQKKNVVNLCHSLE 266
              K + L  +L +            + M  G+          +F   KK    L   L 
Sbjct: 459 EDDKRSFLLDILNAAGLDRATEANKDEKMAMGVPPRREESLTLVFVETKKGADALEEFLY 518

Query: 267 KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
           + G+ V +IHG+  QR R   L  F+ G   ++VA+ +AARGLDIP V HV NFD+P+  
Sbjct: 519 RHGYPVTSIHGDRSQREREDALRVFRSGQCPILVATAVAARGLDIPHVKHVINFDLPSDI 578

Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
           E Y+HRIGRTGR G  G A +    ++   + D +E L E K +   WL
Sbjct: 579 EEYVHRIGRTGRMGNLGLATSFFNDKNRNMVRDLVELLQEAKQELPKWL 627


>gi|291407356|ref|XP_002719895.1| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3
           [Oryctolagus cuniculus]
          Length = 661

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 220/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 182 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 242 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 301

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 302 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 361

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 362 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 420

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + S K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 421 -WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 479

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 480 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 539

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + ++    D ++ L+E K +   WL
Sbjct: 540 LATSFFNERNVNITKDLLDLLVEAKQEVPSWL 571


>gi|311739803|ref|ZP_07713637.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304876|gb|EFQ80945.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 441

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 142/390 (36%), Positives = 215/390 (55%), Gaps = 28/390 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG++ ++   +   G  +   IQ  T+P+ L   D+ G A+TG GKT  F +P+L  
Sbjct: 11  FAELGVAAEICDGLASRGITRTFAIQELTLPIALSGQDLIGQARTGMGKTYGFGVPLLDR 70

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +        +   PR L++ PTRELA QV ++ +    +  + +A + GG P+E Q K+L
Sbjct: 71  VFDDADIDELDGTPRALVVVPTRELAQQVTEDLQVAATHLPVRLASIYGGRPYEEQIKQL 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPFTR 178
            +G DV+I TPGR++D   RG L ++ + ILV+DEAD MLD+GF+P ++ I  +L     
Sbjct: 131 NKGVDVIIGTPGRLIDLHERGNLQLDRVAILVLDEADEMLDLGFLPSVEAILKALDGNAH 190

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF-------VATYAQYSKK 231
           QT+LFSATM   +  ++  F+  P  I        AE+ E  F       V   A    K
Sbjct: 191 QTMLFSATMPGAILTLARRFMDKPIHIR-------AESGEQDFTHSSTRKVTFQAHRMDK 243

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
            A++   LQ+    +  IIF   K+    L   L ++GF V A+HG++ Q+SR K L  F
Sbjct: 244 VAVVAHALQAAGRGRT-IIFARTKRAAAQLADDLARRGFHVGAVHGDLGQKSREKSLHAF 302

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++VA+D+AARG+D+ DV HV N+ VP+    ++HRIGRTGRAG  G A T+V  
Sbjct: 303 RTGQVDILVATDIAARGIDVDDVTHVINYQVPDDPMTFVHRIGRTGRAGHTGTAITMVGY 362

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           +++     I   +         DL   NPP
Sbjct: 363 DELGKWQVINDEL---------DLGEPNPP 383


>gi|148982431|ref|ZP_01816753.1| ATP-dependent RNA helicase SrmB [Vibrionales bacterium SWAT-3]
 gi|145960483|gb|EDK25855.1| ATP-dependent RNA helicase SrmB [Vibrionales bacterium SWAT-3]
          Length = 421

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 131/369 (35%), Positives = 213/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L L+ +++ A+ + GY +PT IQ + IP  L   DV   A TGTGKTASFVLP L  
Sbjct: 5   FAELDLNQELLKAIDEMGYERPTQIQAEAIPQALDGRDVLASAPTGTGKTASFVLPALQY 64

Query: 63  LEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+   R +    R LIL PTRELA Q+ D   +  K   L +  + GG+ ++     L  
Sbjct: 65  LQDFPRKKAGPARMLILTPTRELAMQITDQARELAKYTALNIFTITGGVMYQEHADILGT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR++++    +     IE L++DEADRMLDMGF P +  +++   + +QTL
Sbjct: 125 TQDIVVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPVVDRLSAECRWRKQTL 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLL 239
           LFSAT+  + ++  +E+ L NP  I+  +     + I   +  A  A++  K  LL+ ++
Sbjct: 185 LFSATLEGKGVEGFTEDLLNNPAEIDAKSSLRERKKITQWYHRADTAEH--KLDLLKHII 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  I+F   ++ + +L   LE        I G + Q  R   ++ F++GT+ ++
Sbjct: 243 TKE--AERSIVFLKTRERLGDLRALLESAQIPCAWIQGEMPQDRRNNAIARFRDGTVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A +L+   D   I+ 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQLMIER 360

Query: 360 IEKLIEKKV 368
           + +  ++ +
Sbjct: 361 VARYTKEAI 369


>gi|322815569|gb|EFZ24204.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 544

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 141/405 (34%), Positives = 234/405 (57%), Gaps = 11/405 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  +++ A  +AG+  PT IQ  TIP+V +  D+ G+AQTG+GKT ++VLP++  
Sbjct: 72  FKALGLCEELISACAEAGWQNPTRIQAATIPVVKEGRDIIGVAQTGSGKTGAYVLPLVNW 131

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +++V     L++ PTRELA QV   F   G +  L VA L+GG     Q  +L + 
Sbjct: 132 LLT-QSKVPYLSVLVMVPTRELAQQVTAQFVMLGHSVGLRVATLVGGADMVDQACELSKR 190

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             V++ TPGRI DH    K   +  +  LV+DEAD+MLDM +   I  I   +P +RQT+
Sbjct: 191 PHVVVGTPGRIKDHLQNTKGFKLVKLHALVLDEADKMLDMDYEKEIDAILEHLPHSRQTM 250

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ ++ +  L +P  +EV+  ++T +T++  +V  +  +++  + L   L +
Sbjct: 251 LFSATLNTKIDRLQKASLNDPVLLEVHRKNTTVDTLKQYYV--FCPFAQMLSYLHLYL-T 307

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++T  + ++FC     V  +  +L   G     + G +DQ +R   L+ FKEG I+++V 
Sbjct: 308 RETGNHILVFCRSAALVHRITLTLRILGHQALPLMGRMDQTNRNIALTKFKEGKIRILVC 367

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A RGLDI     V N+ +P+R E+YIHR+GRT RAG  GKA  ++++ DI  +  IE
Sbjct: 368 TDVAQRGLDISHTDVVVNYALPDRVEDYIHRVGRTARAGAQGKAVNIISQYDILLLQRIE 427

Query: 362 KLIEKKV-DW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
                K  +W    GD++++   L++++ A+    ++     Q+S
Sbjct: 428 ATTGVKCEEWPVQEGDVAAV---LQRVEDAEQETIKEIRENEQES 469


>gi|320167743|gb|EFW44642.1| eIF4AIII protein [Capsaspora owczarzaki ATCC 30864]
          Length = 413

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 130/371 (35%), Positives = 203/371 (54%), Gaps = 11/371 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA + L P+++  +   G+ +P+ IQ + I  +L+  DV   AQ+GTGKTA+F +  L 
Sbjct: 38  DFAQMNLKPELLQGIYAYGFEQPSAIQQRAIRPILKGRDVIAQAQSGTGKTATFSISALN 97

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +E      R  + L+L PTRELA Q+       G    +     IGG+      KKL+ 
Sbjct: 98  CVEPA---TRETQALVLSPTRELAQQIQKVVLALGDYMGVQCHACIGGVSVAEDIKKLDY 154

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   NI++L++DEAD ML  GF   I +I   +P T Q +
Sbjct: 155 GQHVVSGTPGRVFDMIKRRHLRTRNIKMLILDEADEMLSRGFKEQIYDIYRYLPPTTQVV 214

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQL 238
           + SAT+  E+ +++  F+ +P RI V     T E I+  F++   +   +   C L   L
Sbjct: 215 IVSATLPHEVLEITTKFMTDPIRILVKRDELTLEGIKQFFISVEREEWKFDTLCDLYDTL 274

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +Q      +IFCN ++ V  L   + K  F+V  +HG +DQ+ R  I+  F+ G  ++
Sbjct: 275 IITQ-----AVIFCNTRRKVEFLAEEMAKANFTVSHMHGEMDQKERDTIMKQFRSGATRV 329

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +DL ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ + 
Sbjct: 330 LITTDLWARGIDVQQVSLVINYDLPINRENYIHRIGRSGRFGRSGVAINFVTNDDVRTLR 389

Query: 359 AIEKLIEKKVD 369
            IE+    +++
Sbjct: 390 DIEQYYATQIE 400


>gi|114608129|ref|XP_518584.2| PREDICTED: probable ATP-dependent RNA helicase DDX43 [Pan
           troglodytes]
          Length = 648

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 136/361 (37%), Positives = 212/361 (58%), Gaps = 7/361 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---MLTILEKG 66
           P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT  +++P    L +    
Sbjct: 251 PEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSL 310

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           + +   P  L+L PTRELA QV     KY     L    + GG   + Q ++L++G D++
Sbjct: 311 KGQKNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIEELKKGVDII 369

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + NI  LV+DEAD+MLDMGF P I  I   V   RQT++ +AT
Sbjct: 370 IATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTTAT 429

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
               + ++++++L+ P  + V T    A  +++   + T  +  +K + +Q  LQ+  + 
Sbjct: 430 WPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEE--EKWSHMQTFLQNMSST 487

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F ++K    +L   L     SV ++HG+ +QR R K L NFK G +++++A+DLA
Sbjct: 488 DKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDLA 547

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLD+ DV HV+NFD P   E Y+HRIGRTGRAGR G + T + + D +    +  ++E
Sbjct: 548 SRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINILE 607

Query: 366 K 366
           +
Sbjct: 608 R 608


>gi|222617461|gb|EEE53593.1| hypothetical protein OsJ_36838 [Oryza sativa Japonica Group]
          Length = 676

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 133/366 (36%), Positives = 213/366 (58%), Gaps = 11/366 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++ A LG+SPK+V  +   G  K  PIQ   +   +Q  D+ G A+TGTGKT +F +P+L
Sbjct: 146 LEVAKLGISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPIL 205

Query: 61  TILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             + +   +    + P  ++L PTRELA QV   F     + N+    + GG P   Q +
Sbjct: 206 DAIIRHNEKNSPGKFPLAIVLAPTRELAKQVEREFSD---SSNVETICVYGGTPISQQIR 262

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G DV+I TPGR++D   RG L ++ +  +V+DEAD+ML +GF   ++ I   VP  
Sbjct: 263 QLNYGVDVVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPK 322

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALL 235
           RQTL+FSATM   +Q++++ +L+NP  I++        AE I    +A+      K A+L
Sbjct: 323 RQTLMFSATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGH--AKPAVL 380

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +L++        I+F   K++   L +++ +  F   A+HG+I Q  R + L  F+EG 
Sbjct: 381 GELIKEHAKGGKCIVFTQTKRDADRLSYTMGRS-FQCQALHGDITQAQRERTLKGFREGH 439

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +++A+D+AARGLDIP+V  V +F++PN +E ++HR GRTGRAG+ GKA  + + +  +
Sbjct: 440 FNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSR 499

Query: 356 HIDAIE 361
            I  +E
Sbjct: 500 AIRMVE 505


>gi|242007840|ref|XP_002424727.1| eukaryotic initiation factor 4A-II, putative [Pediculus humanus
           corporis]
 gi|212508220|gb|EEB11989.1| eukaryotic initiation factor 4A-II, putative [Pediculus humanus
           corporis]
          Length = 449

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 208/370 (56%), Gaps = 11/370 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+GL  +++  +   G+ KP+ IQ + I   ++ HDV   AQ+GTGKTA+F +   +
Sbjct: 77  NFDDMGLKEELLRGIYAYGFEKPSAIQQRAIMPCIKGHDVTAQAQSGTGKTATFSI---S 133

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    +   + LIL PTRELA Q+       G   N      IGG       +KLE 
Sbjct: 134 ILQQIDTSINECQALILAPTRELAQQIQKVVIALGDFMNAMCHACIGGTNVREDMRKLEH 193

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L  + I+I V+DEAD ML  GF   I ++   +    Q +
Sbjct: 194 GVHVVVGTPGRVYDMINRRCLRTDRIKIFVLDEADEMLSRGFKDQIHDVFQTLDVDVQVI 253

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQL 238
           L SATM  ++ +VS+ F++NP  I V     T E I+  +++   +   +   C L + L
Sbjct: 254 LLSATMPHDVLEVSKKFMRNPINILVQKDELTLEGIKQFYISVEREEWKFETLCDLYETL 313

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                T+   +IFCN ++ V  L   + K+ F+V A+HG+++QR R  I+  F+ G+ ++
Sbjct: 314 -----TITQAVIFCNTRRKVDMLTDFMHKKDFTVSAMHGDMEQREREFIMRQFRSGSSRV 368

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +DL ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V ++D + ++
Sbjct: 369 LITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTEQDKRTLN 428

Query: 359 AIEKLIEKKV 368
            IE+     +
Sbjct: 429 DIEQFFNTHI 438


>gi|195395963|ref|XP_002056603.1| GJ11034 [Drosophila virilis]
 gi|194143312|gb|EDW59715.1| GJ11034 [Drosophila virilis]
          Length = 817

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 151/388 (38%), Positives = 219/388 (56%), Gaps = 25/388 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ L+  +   V  A Y KPTP+Q   IP+++   D+   AQTG+GKTA+F++P+L  
Sbjct: 306 FDDVQLTEIIRNNVNLARYDKPTPVQKYAIPIIISGRDLMACAQTGSGKTAAFLVPILNQ 365

Query: 62  ILEKGRA-----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           + E G +           R + P  L+L PTRELA Q+ +  +K+     +  A+L GG 
Sbjct: 366 MYEHGLSAPPQSNRQYSRRKQFPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGN 425

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L+RG  +++ TPGR+ D   RGK+ + NI  LV+DEADRMLDMGF P I+ I
Sbjct: 426 NTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRI 485

Query: 171 TSLV--PFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
              +  P T  RQTL+FSAT   ++Q+++ +FL N   + V    ST+E I    +  Y 
Sbjct: 486 VEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYD 545

Query: 227 QYSKKCALLQQLLQSQDTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
           Q  K+  LL  L   +D  +       +IF   KK   +L   L +    V +IHG+  Q
Sbjct: 546 Q-DKRSYLLDLLSSIRDGPEYSKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQ 604

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           + R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P   E Y+HRIGRTGR G 
Sbjct: 605 KEREEALRCFRSGDCPILVATAVAARGLDIPHVTHVINFDLPTDVEEYVHRIGRTGRMGN 664

Query: 342 HGKAFTLVAKEDIKHI--DAIEKLIEKK 367
            G A +    ++ ++I  D +E LIE K
Sbjct: 665 LGVATSFFNDKN-RNICSDLLELLIETK 691


>gi|193683325|ref|XP_001948746.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Acyrthosiphon pisum]
          Length = 985

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 204/354 (57%), Gaps = 9/354 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G+S K++  +    Y KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 315 WAHCGVSKKIMDNLKKHNYEKPTPIQTQAIPAIMAGRDLIGIAKTGSGKTLAFLLPMFRH 374

Query: 62  ILEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++        P  +++ PTREL  Q      K+ K+  L V  + GG     Q  +L+
Sbjct: 375 IMDQPPLEDTDGPIAIVMAPTRELCMQTGKEARKFTKSLGLRVVSVYGGTGISEQIAELK 434

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  +   V   
Sbjct: 435 RGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRVIDNVRPD 494

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALLQ 236
           RQT++FSAT   +++ ++   LQ P  +++   S  A+ +E H  +    Q   K   L 
Sbjct: 495 RQTVMFSATFPRQMEALARRILQKPVEVQIGGRSVVAKEVEQHVIIVEEEQ---KFMKLL 551

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L       + I+F +  +N   L   L K  +   ++HG IDQ  R   + +FK G I
Sbjct: 552 EVLGVYYERGSCIVFVDTHENADTLLQKLLKASYPCMSLHGAIDQYDRDSTIVDFKSGQI 611

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           +L+VA+ +AARGLD+ D+  V N+D PN  E+Y+HR GRTGRAG  G A+TLV+
Sbjct: 612 KLLVATSVAARGLDVKDLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTLVS 665


>gi|73996618|ref|XP_863098.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 6 [Canis familiaris]
          Length = 806

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 145/417 (34%), Positives = 218/417 (52%), Gaps = 49/417 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+          L  
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSD---------LAR 443

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            E  + ++   P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q  +L  
Sbjct: 444 WEGSQWQINQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRM 503

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT---- 177
           G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P +    
Sbjct: 504 GCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKP 563

Query: 178 ----------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
                                 RQT++F+ATM   +++++ ++L+ P  + + +     E
Sbjct: 564 DTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHE 623

Query: 216 TIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK G++ C
Sbjct: 624 RVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKMGYNAC 678

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHRI
Sbjct: 679 TLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRI 738

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           GRTGRAG+ G A T + KED      +++ I      L   +SS  P L     AQH
Sbjct: 739 GRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQH 789


>gi|89891288|ref|ZP_01202795.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
 gi|89516600|gb|EAS19260.1| ATP-dependent RNA  helicase [Flavobacteria bacterium BBFL7]
          Length = 644

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 133/387 (34%), Positives = 223/387 (57%), Gaps = 14/387 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
           +F  LGLS  ++  + D G+  PT IQ ++IP++L+   D  G+AQTGTGKTA+F LP+L
Sbjct: 14  NFEVLGLSQPLLNGLADMGFENPTEIQQQSIPILLKHDGDFIGLAQTGTGKTAAFGLPLL 73

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
            +++      R  + LIL PTRELA Q+    E+  K+   L V  + GG     Q + +
Sbjct: 74  DLID---VNSREVQALILAPTRELAQQICGQMEQMSKHLGKLNVVPVFGGANIMNQIRDI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR++D   R ++ ++ ++ +V+DEAD ML+MGF   I  I S     R 
Sbjct: 131 RRGAQIIVATPGRLMDLMKRREVKLDALKYMVLDEADEMLNMGFKEDIDFILSKSDTGRN 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  E++++ + ++  P+ + +N  +   + IEH  +   A  S K   L++ L
Sbjct: 191 IWLFSATMAREIKRIVDTYMVQPEEVRINPKNIVNKNIEHQSIQLKA--SDKIEALRRFL 248

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              + M  G++FC  K++  N+   L   G++  A+HG++ Q  R   +  F+   ++L+
Sbjct: 249 DYDEDM-FGVVFCRTKRDTQNVADQLNNNGYATEALHGDMSQAQRDAAMKRFRNKNLKLL 307

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+ D+ HV +F +P+  E Y HR GRT RAG+ G +  L+ + D + +  
Sbjct: 308 IATDVAARGIDVDDITHVIHFALPDDPEFYTHRSGRTARAGKKGVSIALITRGDNRKL-- 365

Query: 360 IEKLIEKK--VDWLNGDLSSLNPPLEK 384
             K I  K  +++  G++ +L    +K
Sbjct: 366 --KFIASKLGIEFTQGEVPALEAITQK 390


>gi|224083077|ref|XP_002306942.1| predicted protein [Populus trichocarpa]
 gi|222856391|gb|EEE93938.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 201/364 (55%), Gaps = 7/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  ++ A    GY KPTPIQ   IPL L   D+CG A TG+GKTA+F LP L  
Sbjct: 138 FMELNLSRPLLRACEALGYTKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 197

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     R+   R LIL PTRELA QV    EK  +  ++   L++GG+  + Q   L   
Sbjct: 198 LLFRPKRILAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKVQEASLRSM 257

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D+++ TPGR++DH  N   + ++++ +L++DEADR+L++GF   I  +  L P  RQT+
Sbjct: 258 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFNAEIHELVRLCPKRRQTM 317

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSS---TAETIEHCFVATYAQYSKKCALLQQL 238
           LFSATMT+E+  + +  L  P R+  + PS+    A T E   +    + +++  LL   
Sbjct: 318 LFSATMTEEVDMLIKLSLTKPLRLSAD-PSAKRPAALTEEVLRLRRMREVNQEAVLLA-- 374

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S+      IIF   K+    L       GF    +HGN+ Q  R+  L  F++  +  
Sbjct: 375 LCSKTFTSKAIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQAQRLDALELFRKQEVDF 434

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLDI  V  V N+  P    +YIHR+GRT RAGR G A T V   D   + 
Sbjct: 435 LIATDVAARGLDIIGVQTVINYACPRDLTSYIHRVGRTARAGREGYAVTFVTDNDRSLLK 494

Query: 359 AIEK 362
           AI K
Sbjct: 495 AIAK 498


>gi|194763447|ref|XP_001963844.1| GF21236 [Drosophila ananassae]
 gi|190618769|gb|EDV34293.1| GF21236 [Drosophila ananassae]
          Length = 1211

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 134/387 (34%), Positives = 218/387 (56%), Gaps = 19/387 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 506 WAQCGVSKKEMDVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRH 565

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G   +     +I+ PTREL  Q+  +  K+ K+  L    + GG     Q 
Sbjct: 566 ILDQPSLEDGDGAI----AIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQI 621

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RG+++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 622 AELKRGSEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDN 681

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQYSKK 231
           V   RQT++FSAT   +++ ++   L+ P  + V   S   + +E   V     A++ K 
Sbjct: 682 VRPDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKDVEQHVVILNDDAKFFK- 740

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +F
Sbjct: 741 ---LLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDF 797

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G ++L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G+AFT +  
Sbjct: 798 KSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGQAFTFITP 857

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           E  ++   I + ++     +  +L +L
Sbjct: 858 EQSRYAGDIIRALDLSGTLIPAELQTL 884


>gi|146281264|ref|YP_001171417.1| ATP-dependent RNA helicase [Pseudomonas stutzeri A1501]
 gi|145569469|gb|ABP78575.1| probable ATP-dependent RNA helicase [Pseudomonas stutzeri A1501]
          Length = 372

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 122/293 (41%), Positives = 184/293 (62%), Gaps = 3/293 (1%)

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R L+L PTRELA QV ++F  YG+N  L    + GG+    Q   L +G DVL+ TPGR+
Sbjct: 7   RALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMALRKGIDVLVATPGRL 66

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193
           LD + +  +    ++ LV+DEADRMLD+GF   +  + S +P  RQTLLFSAT ++ +++
Sbjct: 67  LDLYRQNAVGFAQLQALVLDEADRMLDLGFAEELDALFSALPRKRQTLLFSATFSEPIRQ 126

Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
           ++   L++P  +EV+  ++ A+T++   V       +K  L   LL ++      ++F  
Sbjct: 127 MARELLRDPLSVEVSPRNAAAKTVKQWLVPV--DKKRKSELFLHLL-AERCWGQVLVFVK 183

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            +K V  L   L+ QG +  AIHG+  Q SR++ L  FK G +Q++VA+D+AARGLDI D
Sbjct: 184 TRKGVDQLVDELQAQGIASDAIHGDKPQASRLRALERFKAGEVQVLVATDVAARGLDIHD 243

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           +  V NFD+P  AE+Y+HRIGRTGRAG  G+A +LVA +++  + AIE LI +
Sbjct: 244 LPQVVNFDLPIVAEDYVHRIGRTGRAGASGEAISLVAADEVDQLAAIETLINQ 296


>gi|195452372|ref|XP_002073325.1| GK14071 [Drosophila willistoni]
 gi|194169410|gb|EDW84311.1| GK14071 [Drosophila willistoni]
          Length = 802

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 153/388 (39%), Positives = 218/388 (56%), Gaps = 25/388 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ L+  +   V  A Y KPTP+Q   IP+++   D+   AQTG+GKTA+F+LP+L  
Sbjct: 298 FDDVQLTEIIRNNVNLARYDKPTPVQKYAIPIIISGRDLMACAQTGSGKTAAFLLPILNQ 357

Query: 62  ILEKG-----------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           + E G             R + P  L+L PTRELA Q+ +  +K+     +  A+L GG 
Sbjct: 358 MYEHGISSPPQSNRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGN 417

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L+RG  +++ TPGR+ D   RGK+ + NI  LV+DEADRMLDMGF P I+ I
Sbjct: 418 NTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRI 477

Query: 171 TSLV--PFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
              +  P T  RQTL+FSAT   ++Q+++ +FL N   + V    ST+E I    +  Y 
Sbjct: 478 VEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYE 537

Query: 227 QYSKKCALLQQLLQSQDTMKN-----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
           Q  K+  LL  L   +D  +       +IF   KK   +L   L +    V +IHG+  Q
Sbjct: 538 Q-DKRSYLLDLLSSIRDGPEYCKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQ 596

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           + R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P+  E Y+HRIGRTGR G 
Sbjct: 597 KEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGN 656

Query: 342 HGKAFTLVAKEDIKHI--DAIEKLIEKK 367
            G A +    E  ++I  D +E LIE K
Sbjct: 657 LGVATSFF-NEKNRNICSDLLELLIETK 683


>gi|301612898|ref|XP_002935945.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 isoform 2
           [Xenopus (Silurana) tropicalis]
          Length = 1024

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 145/447 (32%), Positives = 240/447 (53%), Gaps = 25/447 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++    Y KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 348 WVQCGISMKILNSLKKHAYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 407

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 408 IMDQRPLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 463

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 464 AELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDN 523

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKC 232
           +   RQT++FSAT    ++ ++   L  P  ++V   S     +E H  V    +   K 
Sbjct: 524 IRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEEKKFLKL 583

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L    Q +  +   IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK
Sbjct: 584 LELLGHYQEKGAV---IIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFK 640

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G  +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G AFT + ++
Sbjct: 641 NGVCKLLVATSVAARGLDVKQLILVINYACPNHYEDYVHRAGRTGRAGNKGYAFTFITED 700

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             ++   I K +E     L+G  +++   LE++        +    I +K++GF  +   
Sbjct: 701 QARYAGDIIKALE-----LSG--TAVPAELEQLWNEFKEQQKAEGKIIKKTSGFSGKGFK 753

Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439
           +   +  +   E +K+ K    +Q++D
Sbjct: 754 FDETEQALA-NERKKLQKAALGLQDSD 779


>gi|218694919|ref|YP_002402586.1| ATP-dependent RNA helicase DbpA [Escherichia coli 55989]
 gi|218351651|emb|CAU97366.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           55989]
          Length = 457

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 138/377 (36%), Positives = 217/377 (57%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+L H  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLAHLQKGTISLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W     +S   PLE
Sbjct: 363 KLNWQTPPANSSILPLE 379


>gi|91206541|sp|Q7SBC6|DBP2_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-2
          Length = 562

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 130/363 (35%), Positives = 201/363 (55%), Gaps = 13/363 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 134 FDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 193

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 194 INAQPLLAPGDG----PIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQI 249

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 250 RDLSRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 309

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL-- 234
            RQTL++SAT   E++ ++ +FL +  ++ + +    A       V   ++  K+  +  
Sbjct: 310 DRQTLMWSATWPKEVRNLAADFLTDFIQVNIGSMDLAANHRITQIVEVVSESEKRDRMIK 369

Query: 235 -LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L+++++ ++     +IF   K+   ++   L + G+   +IHG+  Q  R  +L  FK 
Sbjct: 370 HLEKIMEGRENQNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKT 429

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +MVA+D+A+RG+D+ ++ HV N+D PN +E+YIHRIGRTGRAG  G A T    ++
Sbjct: 430 GKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDN 489

Query: 354 IKH 356
            K 
Sbjct: 490 SKQ 492


>gi|307331285|ref|ZP_07610408.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306883097|gb|EFN14160.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 565

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 129/347 (37%), Positives = 193/347 (55%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL  ++V  +   G   P PIQ  TIP  +   D+ G  +TG+GKT SF LP+LT 
Sbjct: 65  FADLGLPEQIVRKLAQNGVTTPFPIQAATIPDAMAGKDILGRGRTGSGKTLSFGLPLLTT 124

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G    + PR LIL PTRELA QV+D  + YG    L + ++ GG     Q   LERG
Sbjct: 125 LAGGHTEKKRPRGLILTPTRELAMQVSDALQPYGDILGLKLKVVCGGTSMGNQIYALERG 184

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+ D  +RG   ++ +++ V+DEAD+M DMGF+P +  I  LVP   Q LL
Sbjct: 185 VDILVATPGRLRDIIDRGAATLDKVQVAVLDEADQMADMGFLPEVTEILDLVPQGGQRLL 244

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ +E+  + + +L +P   EV++      T+ H  +       K  A +   + ++
Sbjct: 245 FSATLENEIDSLVKRYLVDPVTHEVDSAQGAVTTMTHHVLVV---KPKDKAPVTAAIAAR 301

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L   G    A+HG + Q +R + L++FK+G + ++VA+
Sbjct: 302 --KGRTIIFVRTQLGCDRVAEQLCDAGVRADALHGGMTQGARTRTLADFKDGYVNVLVAT 359

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+ +  +  V N D     ++Y+HR GRT RAG+ G   +L 
Sbjct: 360 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGQSGTVVSLA 406


>gi|164424171|ref|XP_962960.2| ATP-dependent RNA helicase dbp-2 [Neurospora crassa OR74A]
 gi|157070404|gb|EAA33724.2| ATP-dependent RNA helicase dbp-2 [Neurospora crassa OR74A]
          Length = 546

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 130/363 (35%), Positives = 201/363 (55%), Gaps = 13/363 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 118 FDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 177

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 178 INAQPLLAPGDG----PIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQI 233

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 234 RDLSRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 293

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL-- 234
            RQTL++SAT   E++ ++ +FL +  ++ + +    A       V   ++  K+  +  
Sbjct: 294 DRQTLMWSATWPKEVRNLAADFLTDFIQVNIGSMDLAANHRITQIVEVVSESEKRDRMIK 353

Query: 235 -LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L+++++ ++     +IF   K+   ++   L + G+   +IHG+  Q  R  +L  FK 
Sbjct: 354 HLEKIMEGRENQNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKT 413

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +MVA+D+A+RG+D+ ++ HV N+D PN +E+YIHRIGRTGRAG  G A T    ++
Sbjct: 414 GKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDN 473

Query: 354 IKH 356
            K 
Sbjct: 474 SKQ 476


>gi|3641|emb|CAA39465.1| DBP1 [Saccharomyces cerevisiae]
          Length = 618

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 203/364 (55%), Gaps = 19/364 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF+   L   ++  +  A + KPTP+Q  +IP+V +  D+   AQTG+GKT  F+ P+ 
Sbjct: 155 LDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLF 214

Query: 61  TIL---------EKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
           T L         EK ++   R   P  L+L PTRELA Q+ +   K+     +   ++ G
Sbjct: 215 TELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYG 274

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G P   Q ++++RG D+L+ TPGR+ D   RGK+ + NI+ LV+DEADRMLDMGF P I+
Sbjct: 275 GAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIR 334

Query: 169 NITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           +I           RQTL+FSAT   ++Q ++ +FL N   + V    ST+E I    +  
Sbjct: 335 HIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYV 394

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                KK ALL  L      +   +IF   K+    L   L  Q F   AIHG+  Q  R
Sbjct: 395 -DDMDKKSALLDLLSAEHKGLT--LIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAER 451

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + LS FK     ++VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G 
Sbjct: 452 ERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGV 511

Query: 345 AFTL 348
           A + 
Sbjct: 512 ATSF 515


>gi|170017592|ref|YP_001728511.1| superfamily II DNA/RNA helicase [Leuconostoc citreum KM20]
 gi|169804449|gb|ACA83067.1| Superfamily II DNA and RNA helicase [Leuconostoc citreum KM20]
          Length = 454

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 132/349 (37%), Positives = 204/349 (58%), Gaps = 9/349 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ A+   G+++PT +Q K IP VLQ HDV G +QTG+GKT +F++P++  
Sbjct: 8   FGQFNLKSDIISALTAIGFIQPTAVQAKLIPAVLQGHDVVGQSQTGSGKTHTFLIPIINQ 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKLE 120
           LE+G+  V+    +I  P+RELAAQ+    +++     Y +T++  +GG     Q K+LE
Sbjct: 68  LEQGKNYVQ---AVITTPSRELAAQITKAAKQFADKLPYEVTISEFVGGTDKLRQVKQLE 124

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++I TPGRI D  + G L ++ ++ LV+DEAD  LDMGF+  +  I   +P   Q
Sbjct: 125 NNQPQIIIGTPGRIKDLVSSGALKLHAVKTLVVDEADMTLDMGFLNEVDYIAGAMPEKLQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSATM ++L+   + +L NPK   +   +  AETI++  +AT ++  K   + Q L 
Sbjct: 185 TLVFSATMPEKLKPFLKKYLDNPKFEAIPVSTVIAETIDNWLLATKSK-DKNDVIYQILS 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S   +   ++F N K     +  +L  +G  V  IHG+I+ R R +++   +    Q +
Sbjct: 244 ISNPYL--ALVFANTKDRAKEIASNLRSKGLKVAEIHGDIEPRERRRVMKAIQNLDYQYV 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           VA+DLAARG+DI  V HV N D+P   E ++HR+GRTGR G  G A TL
Sbjct: 302 VATDLAARGIDIEGVSHVINDDIPGELEFFVHRVGRTGRNGMPGLAITL 350


>gi|119715705|ref|YP_922670.1| DEAD/DEAH box helicase domain-containing protein [Nocardioides sp.
           JS614]
 gi|119536366|gb|ABL80983.1| DEAD/DEAH box helicase domain protein [Nocardioides sp. JS614]
          Length = 479

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 139/414 (33%), Positives = 224/414 (54%), Gaps = 12/414 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML--TILEKGR 67
           P++  A+     V P  IQ  T+ + L   D+ G A+TGTGKT +F +P+L  ++  K  
Sbjct: 3   PEICDALERVNIVTPFAIQEMTLSVALMGTDLIGQARTGTGKTLAFGIPVLQRSVAPKDP 62

Query: 68  ARVRMPR----TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
               +P+     LI+ PTRELA QV+ +    G +  L V  + GG+ +E Q   L+ G 
Sbjct: 63  DYAELPQGKPQALIVAPTRELALQVSGDLALAGADRGLRVLTVYGGVGYEPQLDALQEGV 122

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
           D+++ TPGR++D  NR  L ++++  LV+DEAD MLD+GF+P ++ I ++ P TRQT+LF
Sbjct: 123 DIVVGTPGRLIDLANRRALDISHVHALVLDEADEMLDLGFLPDVERILAMTPETRQTMLF 182

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM   +  ++   +++P  I   +    A           A    K  ++ ++LQ++D
Sbjct: 183 SATMPAAIVALARTHMRHPMNIRAESSYENATVPATAQFIYQAHDLDKPEIIGRVLQAED 242

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             K  I+F   K+    +   L ++GFS   +HG++ Q +R K L+ F+E  ++++VA+D
Sbjct: 243 AGKV-IVFTRTKRQAQRVADDLAERGFSASPLHGDMAQVAREKALTKFREDKLRVLVATD 301

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARG+D+  V HV N+  P   + Y+HRIGRTGRAG  G A T V   D+     I K 
Sbjct: 302 VAARGIDVAGVSHVINYSCPEDDKTYVHRIGRTGRAGASGIAITFVDWADLARWKMINKA 361

Query: 364 IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI-----PQKSTGFDRRKKN 412
           ++   D      S+         IA     R  +P      P++  G +RR+++
Sbjct: 362 LDLPFDEPQETYSTSEHLYHDQGIAPGTKGRIVDPAPVERKPREDRGGERRERS 415


>gi|157876834|ref|XP_001686759.1| DEAD box RNA helicase [Leishmania major strain Friedlin]
 gi|68129834|emb|CAJ09140.1| putative DEAD box RNA helicase [Leishmania major strain Friedlin]
          Length = 527

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 130/361 (36%), Positives = 213/361 (59%), Gaps = 5/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL  ++  A  DAG+  PT IQ  TI +  +  D+ G+AQTG+GKT ++ LP++  
Sbjct: 55  FQDLGLCQELCAACADAGWQHPTRIQASTITVFAEGRDLIGVAQTGSGKTGAYALPLVNW 114

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   R    +   L++ PTRELA QV   F   G++  L VA L+GG     Q  +L + 
Sbjct: 115 LLAQRKTPYLS-VLVMVPTRELAQQVTAQFVLLGRSVGLRVATLVGGADMVEQACELSKR 173

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             V++ TPGR+ DH +  K   +  +  LV+DEAD+MLDM +   I  I   +P  R+T+
Sbjct: 174 PHVVVGTPGRVKDHLSNTKGFKLVKLHALVLDEADKMLDMNYEKEIDAILEQLPQNRRTM 233

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT++ ++ ++ +  L++P  ++V+  ++T +T++  ++  +A +++  + L   L +
Sbjct: 234 LFSATLSTKIDRLQKASLRDPVLLQVHRKNTTVDTLKQYYI--FAPFAQMLSYLHLFL-T 290

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++T  + +IFC     V  +  +L   G     + G +DQ +R   L+ FKEG +++++ 
Sbjct: 291 KETGNHILIFCRSAALVHKITLTLRILGHRALPLMGRMDQSNRNIALTKFKEGKVRMLIC 350

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A RGLDIP    V NF +P+  E+YIHR+GRT RAG  GKA  L+++ DI  +  IE
Sbjct: 351 TDVAQRGLDIPHTDVVVNFSLPDHVEDYIHRVGRTARAGAEGKAVNLISQYDIVLLQKIE 410

Query: 362 K 362
           +
Sbjct: 411 Q 411


>gi|45709504|gb|AAH67585.1| Ddx5 protein [Danio rerio]
          Length = 496

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 136/356 (38%), Positives = 199/356 (55%), Gaps = 14/356 (3%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           PK V  V+    +  PTPIQ +  P+ L   D+ GIAQTG+GKT S++LP +        
Sbjct: 104 PKYVMDVITKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPF 163

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE G      P  L+L PTRELA QV     +YGK   +    + GG P   Q + LERG
Sbjct: 164 LEHGDG----PICLVLAPTRELAQQVQQVAAEYGKASRIKSTCIYGGAPKGPQIRDLERG 219

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 220 VEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 279

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +SAT   E+++++E+FL+   +I V     S+    ++   V    +   K   L + + 
Sbjct: 280 WSATWPKEVRQLAEDFLKEYIQINVGALQLSANHNILQIVDVCNDGEKEDKLIRLLEEIM 339

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+   K  IIF   K+   +L   + + G+    IHG+ +Q+ R  +L+ FK G   +++
Sbjct: 340 SEKENKT-IIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKAPILI 398

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           A+D+A+RGLD+ DV  V NFD PN +E+YIHRIGRT R+ + G A+T     ++K 
Sbjct: 399 ATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQ 454


>gi|323335026|gb|EGA76316.1| Dbp1p [Saccharomyces cerevisiae Vin13]
          Length = 617

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 203/364 (55%), Gaps = 19/364 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF+   L   ++  +  A + KPTP+Q  +IP+V +  D+   AQTG+GKT  F+ P+ 
Sbjct: 154 LDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLF 213

Query: 61  TIL---------EKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
           T L         EK ++   R   P  L+L PTRELA Q+ +   K+     +   ++ G
Sbjct: 214 TELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYG 273

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G P   Q ++++RG D+L+ TPGR+ D   RGK+ + NI+ LV+DEADRMLDMGF P I+
Sbjct: 274 GAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIR 333

Query: 169 NITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           +I           RQTL+FSAT   ++Q ++ +FL N   + V    ST+E I    +  
Sbjct: 334 HIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYV 393

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                KK ALL  L      +   +IF   K+    L   L  Q F   AIHG+  Q  R
Sbjct: 394 -DDMDKKSALLDLLSAEHKGLT--LIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAER 450

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + LS FK     ++VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G 
Sbjct: 451 ERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGV 510

Query: 345 AFTL 348
           A + 
Sbjct: 511 ATSF 514


>gi|322785598|gb|EFZ12253.1| hypothetical protein SINV_05205 [Solenopsis invicta]
          Length = 725

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 133/378 (35%), Positives = 208/378 (55%), Gaps = 2/378 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +      V+  +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP +  
Sbjct: 111 FEESNFPDYVMNEIKKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPAIVH 170

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I  + R +R   P  LIL PTRELA Q+      +G +  +    + GG P   Q + LE
Sbjct: 171 INNQPRLSRGDGPIVLILAPTRELAQQIQTVARDFGSSSCIRNTCIFGGSPKGPQARDLE 230

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 231 RGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 290

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+Q ++E+FL +  +I + + +  A       +    ++ K+  L Q L +
Sbjct: 291 LMWSATWPKEVQALAEDFLTDYIQINIGSLTLAANHNIRQIIEICQEHEKETKLSQLLRE 350

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   KK V ++  ++++ G+   +IHG+  Q  R  +LS F+ G   ++V
Sbjct: 351 IGAERSKMIIFVETKKKVDDITKTIKRDGWPAISIHGDKSQPERDYVLSEFRNGKTMILV 410

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV +V NFD PN +E+YIHRIGRTGR    G A+      + +    +
Sbjct: 411 ATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNNARQAKEL 470

Query: 361 EKLIEKKVDWLNGDLSSL 378
             ++E+    +N  L+ +
Sbjct: 471 IAVLEEAGQAINPQLAEM 488


>gi|134034090|sp|P0C2M6|DED1_EMENI RecName: Full=ATP-dependent RNA helicase ded1
 gi|259482717|tpe|CBF77461.1| TPA: ATP-dependent RNA helicase ded1 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:P0C2M6] [Aspergillus
           nidulans FGSC A4]
          Length = 668

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 136/361 (37%), Positives = 202/361 (55%), Gaps = 20/361 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 188 FTNPPLDDHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 247

Query: 63  LEK--------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
             +              GR R   P +LIL PTREL +Q+ D   K+     +   ++ G
Sbjct: 248 AYQNGPAAPPPSAAGQFGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYG 307

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ L++DEADRMLDMGF P I+
Sbjct: 308 GADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIR 367

Query: 169 NITSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
            I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I       
Sbjct: 368 RIVEGEDMPNVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQK--VE 425

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
           Y +   K ++L  +L +  T    +IF   K+    L   L  Q F   AIHG+  QR R
Sbjct: 426 YVEDHDKRSVLLDILHTHGTTGLTLIFVETKRMADALSEFLINQRFPATAIHGDRTQRER 485

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G 
Sbjct: 486 ERALEMFRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGI 545

Query: 345 A 345
           A
Sbjct: 546 A 546


>gi|121486020|gb|ABM54889.1| ATP-independent RNA helicase [Escherichia coli]
          Length = 437

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 132/352 (37%), Positives = 208/352 (59%), Gaps = 8/352 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   A +   + L+L 
Sbjct: 2   GYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID---ASLFQTQALVLC 58

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF  Q   L+    +++ TPGR+LDH  
Sbjct: 59  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 118

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT  + +  +S   
Sbjct: 119 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRV 178

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            ++P  IE+++ +     IE  F  T ++   K  LL++LL S     + ++FCN KK+ 
Sbjct: 179 QRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLRRLL-SLHQPSSCVVFCNTKKDC 234

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 235 QAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVV 294

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ K++W
Sbjct: 295 NFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNW 346


>gi|145256950|ref|XP_001401571.1| ATP-dependent RNA helicase ded1 [Aspergillus niger CBS 513.88]
 gi|134034089|sp|A2QI25|DED1_ASPNC RecName: Full=ATP-dependent RNA helicase ded1
 gi|134058481|emb|CAL00690.1| unnamed protein product [Aspergillus niger]
          Length = 678

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 199/347 (57%), Gaps = 22/347 (6%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK------------- 65
           A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+   +             
Sbjct: 205 AHYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAYQNGPSAAPAQAGGQ 264

Query: 66  ---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
              GR R   P +LIL PTREL +Q+ D   K+     +   ++ GG    +Q +++ERG
Sbjct: 265 FGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERG 324

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--VPFT--R 178
            D+L+ TPGR++D   RG++ + NI+ L++DEADRMLDMGF P I+ I     +P    R
Sbjct: 325 CDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPHVNDR 384

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT   ++Q ++ +FL++   + V    ST+E I       Y +   K ++L  +
Sbjct: 385 QTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQK--VEYVEDHDKRSVLLDI 442

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +  T    +IF   K+   +L   L  Q F   AIHG+  QR R + L  F+ G   +
Sbjct: 443 LHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPI 502

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           +VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G A
Sbjct: 503 LVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIA 549


>gi|302873918|ref|YP_003842551.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307689833|ref|ZP_07632279.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302576775|gb|ADL50787.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
           743B]
          Length = 374

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 211/367 (57%), Gaps = 13/367 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +LG++  +V  + D G  +PTP+Q ++IP +    D+ G AQTGTGKT +F+LP  
Sbjct: 1   MNFKELGINEALVKILKDTGITEPTPVQSESIPHIKAGGDLIGEAQTGTGKTLAFLLP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I E     V   + LIL PTRELA Q+ +   K  +  ++ +    GG    +Q KKL+
Sbjct: 59  -IFENISPTVNNVQALILTPTRELAIQITNQALKLKEGKDINILAAYGGKDIGSQLKKLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH  R  + ++ ++  V+DEAD+ML MGF   +++I  +    RQT
Sbjct: 118 NNIHLIIATPGRLLDHIERKTVDLSKLKTFVLDEADQMLLMGFKNEVESIIKVTSKKRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK--CALLQQL 238
           L FSAT+  +++K++  ++ +P  + +     T  TI+   V T  +  +   CA+L   
Sbjct: 178 LCFSATLNSDVKKLAYRYMNDPITVTIKKEEVTLSTIKQHVVETTDRRKQNALCAVL--- 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +D     IIFC  K+   +L   L ++G++   +H +I Q  R +I+  F+    Q 
Sbjct: 235 --DEDNPFMAIIFCRTKRRADDLEVGLYQRGYNCAKLHSDIPQSKRERIMKAFRNADFQY 292

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLDI  V H++N+D+P   E+YIHRIGRTGRAG  G     +   D K+ D
Sbjct: 293 LIATDVAARGLDISGVTHIYNYDIPESVESYIHRIGRTGRAGEEGYTCLFI---DPKNND 349

Query: 359 AIEKLIE 365
            +E++ E
Sbjct: 350 MLEEIEE 356


>gi|146306338|ref|YP_001186803.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145574539|gb|ABP84071.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 441

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 137/370 (37%), Positives = 210/370 (56%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA   L  +++ AV +  +V+PTP+Q   IP  L+  D+  IAQTG+GKTA+FVLP+L  
Sbjct: 2   FAQFALHERLLKAVAELNFVEPTPVQAAAIPPALEGKDLRVIAQTGSGKTAAFVLPLLNR 61

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L  G ++ R+  R LIL PTRELA Q     E++ +   L   L+ GG  F+ Q   + 
Sbjct: 62  LLGDGNSQQRVSIRALILLPTRELAQQTLKEVERFAQFTFLKAGLVTGGEDFKVQAAMM- 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R  D+LI TPGR+++H N G L + ++E+LV DEADRMLDMGF    Q +        QT
Sbjct: 121 RKIDILIGTPGRLIEHANAGNLPLGDVEVLVFDEADRMLDMGFAEDAQRLAEACG-PHQT 179

Query: 181 LLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT   + L+++    L+ P+ + +N+ S   E      +     + K+   L   L
Sbjct: 180 LLFSATTGGNGLREMVAKVLKEPQHLMLNSVSQLNEGTRQQIITADHNHHKEQ--LVDWL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +T    I+F N +     L   L   G     +HG  DQ+ R   +   ++G ++++
Sbjct: 238 LANETYDKAIVFTNTRVQADRLYGKLVAAGVKAFVLHGEKDQKDRKLAIERLRQGAVKVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + +
Sbjct: 298 VATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGGEGLAISLICHTDWNLMSS 357

Query: 360 IEKLIEKKVD 369
           IE+ ++++ +
Sbjct: 358 IERYLKQRFE 367


>gi|68478729|ref|XP_716633.1| hypothetical protein CaO19.7392 [Candida albicans SC5314]
 gi|74656359|sp|Q5A4E2|DED1_CANAL RecName: Full=ATP-dependent RNA helicase DED1
 gi|46438305|gb|EAK97638.1| hypothetical protein CaO19.7392 [Candida albicans SC5314]
 gi|238881007|gb|EEQ44645.1| ATP-dependent RNA helicase ded1 [Candida albicans WO-1]
          Length = 672

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 207/364 (56%), Gaps = 23/364 (6%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVR-------- 71
           + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+    KG A V         
Sbjct: 206 FTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMKGPAPVPESNGAFSS 265

Query: 72  ---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
               P  L++ PTREL +Q+ +  +K+     +   ++ GG     Q + ++RG D+L+ 
Sbjct: 266 HKVYPTILVMAPTRELVSQIYEESKKFSYRSWVRACVVYGGADIGQQMRNMDRGCDLLVA 325

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFS 184
           TPGR+ D  +RGK+ + NI  LV+DEADRMLDMGF P I+ I           RQTL+FS
Sbjct: 326 TPGRLKDLLDRGKVSLANIRYLVLDEADRMLDMGFEPQIRYIVEECDMPAVKDRQTLMFS 385

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT   ++Q ++ +FL++   + V    ST+E I    +  Y +  +K +++  LL + + 
Sbjct: 386 ATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKIL--YVEDDEKKSVILDLLSANE- 442

Query: 245 MKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             NG  I+F   K+   NL   L  QGF   AIHG+  Q  R K L+ FK G   ++VA+
Sbjct: 443 --NGLTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPILVAT 500

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
            +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A     + +   +  + +
Sbjct: 501 AVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNVVKGLIE 560

Query: 363 LIEK 366
           L+ +
Sbjct: 561 LLSE 564


>gi|294942246|ref|XP_002783449.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239895904|gb|EER15245.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 463

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 135/370 (36%), Positives = 204/370 (55%), Gaps = 8/370 (2%)

Query: 3   FADLGLSPKV--VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           F  LG+ P++   C VL   +  P+ IQ +TIP  LQ  D+  +A+TG+GKT +F +P++
Sbjct: 31  FESLGVCPELCKACDVLQ--WEHPSKIQEETIPYALQGRDLIALAETGSGKTGAFAIPII 88

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L       ++    +L PTREL  Q+   FE  G + NLT A ++GG+    Q   L 
Sbjct: 89  QKLLDAAPHRKLTWACVLAPTRELCVQIGQQFEGLGASINLTTATIVGGLDMVTQAMSLS 148

Query: 121 RGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   +++ +PGR++DH    K   +  I+ LV+DEADR+L M F   +  I    P  RQ
Sbjct: 149 KKPHIIVASPGRLVDHLENTKGFHLKTIKFLVMDEADRLLGMDFEDALNKIVQSCPRDRQ 208

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT+++ ++    L  P + EV      A+ +   ++  +  +  K A L  LL
Sbjct: 209 TFLFSATMTNKVSQLQRASLTRPVKCEVARKFDVAKGLVQNYM--FVPHKHKHAYLAALL 266

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +   +   +IF +   N   +  +L   G +   +HG + Q  R+  L+ F+ GT  ++
Sbjct: 267 -AHFKLSTVMIFVDTCLNAQRMATTLRHLGHNCVCLHGKMTQTHRLGALNQFRAGTRSVL 325

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V NFDVP   E YIHR+GRT RAGR G++ TLV + DI+    
Sbjct: 326 VATDVAARGLDIPSVDVVINFDVPKNPEEYIHRVGRTARAGRTGRSVTLVTQYDIEPFQR 385

Query: 360 IEKLIEKKVD 369
           IE    KK++
Sbjct: 386 IENKQGKKME 395


>gi|197335121|ref|YP_002155200.1| ATP-dependent RNA helicase SrmB [Vibrio fischeri MJ11]
 gi|197316611|gb|ACH66058.1| ATP-dependent RNA helicase SrmB [Vibrio fischeri MJ11]
          Length = 413

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 132/366 (36%), Positives = 204/366 (55%), Gaps = 5/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL LSP ++ A+ +  Y +PT +Q  TIP  L+  D+   A TGTGK+A+F+LP L  
Sbjct: 5   FADLDLSPNLLRALEEIDYQRPTQVQAMTIPEALEGKDILASAPTGTGKSAAFLLPALQH 64

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+    R   P R LIL PTRELA QVAD   +  K     V  + GGI ++     L  
Sbjct: 65  LDDFPRREPGPARILILTPTRELAIQVADEARQLAKYTRHKVFTITGGISYQDHADILAT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR++++    +     IE L++DEADRMLDMGF P +  ++    + +QT 
Sbjct: 125 TQDIVVATPGRLMEYIEAERFDCRAIETLILDEADRMLDMGFGPVVDRLSKECRWRKQTF 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+    ++  + + L  P  I         + I   +       + K  LL+ +L+
Sbjct: 185 LFSATLEGRGVEGFTADLLNEPAEINAEPSRRERKKITQWY-HRADNMAHKIDLLKSILK 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   +  I+F   ++ +  L   LE        I G + Q SR   ++ F++GT+ +++
Sbjct: 244 EQ--AERSIVFVKTRERLAELRGHLETAKIPCAWIQGEMAQESRNNAIARFRDGTVNVLI 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+PDV HV NFD+P  A+ Y+HRIGRT RAG+ G A +L+   D   ++ +
Sbjct: 302 ATDVAARGIDLPDVSHVINFDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQPMMERV 361

Query: 361 EKLIEK 366
            + I++
Sbjct: 362 GRYIKE 367


>gi|148826462|ref|YP_001291215.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae PittEE]
 gi|189040030|sp|A5UDI1|RHLB_HAEIE RecName: Full=ATP-dependent RNA helicase rhlB
 gi|148716622|gb|ABQ98832.1| ATP-dependent RNA helicase [Haemophilus influenzae PittEE]
          Length = 415

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 212/368 (57%), Gaps = 10/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L P V   +   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDLSLHPIVRDTLAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   +        PR LIL  TRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 71  LLTHQDPNLEYPHPRALILASTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P    
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPTPQV 190

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           R T+LFSAT++ ++++++   + +P+ IE+     T   I E  F   Y     K ALL 
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELF---YPSNQDKMALLL 247

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ +   +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G +
Sbjct: 248 TLMEDE-WPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDL 306

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   +
Sbjct: 307 DILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMN 366

Query: 357 IDAIEKLI 364
           + AIE+ I
Sbjct: 367 LPAIEEYI 374


>gi|50292931|ref|XP_448898.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74664283|sp|Q8TFK8|DED1_CANGA RecName: Full=ATP-dependent RNA helicase DED1
 gi|20086311|gb|AAM08102.1| DED1p [Candida glabrata]
 gi|49528211|emb|CAG61868.1| unnamed protein product [Candida glabrata]
          Length = 617

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 210/364 (57%), Gaps = 19/364 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKG------ 66
           A + KPTP+Q  ++P+V +  D+   AQTG+GKT  F+ P+L+        EK       
Sbjct: 163 ARFTKPTPVQKYSVPIVSKGRDLMACAQTGSGKTGGFLFPVLSESFLTGPAEKAANDGYS 222

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
             R   P  +++ PTRELA Q+ D  +K+     +   ++ GG P   Q ++++ G D+L
Sbjct: 223 YQRKAFPTAVVMAPTRELATQIFDEAKKFCYRSWVKPCVVYGGAPIGNQMREMDHGCDLL 282

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--VPFT--RQTLL 182
           + TPGR+ D   RGK+ ++N++ LV+DEADRMLDMGF P I++I     +P T  RQTL+
Sbjct: 283 VATPGRLNDLLERGKVSLSNVKYLVLDEADRMLDMGFEPQIRHIVEDCDMPPTGERQTLM 342

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT   ++Q ++ +FL +   + V    ST+E I    +    +  K  ALL  L  S 
Sbjct: 343 FSATFPHDIQHLARDFLHDYIFLSVGRVGSTSENITQRILYVENR-DKNSALLDLLAASN 401

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D +   +IF   K+    L   L  Q FS  AIHG+  Q  R + L+ F+ G   ++VA+
Sbjct: 402 DNLT--LIFVETKRMADQLTDFLIMQNFSATAIHGDRSQAERERALAAFRSGRANILVAT 459

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
            +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A     +++   +  + +
Sbjct: 460 AVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGVATAFFNRDNNNIVKGLYE 519

Query: 363 LIEK 366
           ++E+
Sbjct: 520 ILEE 523


>gi|323494307|ref|ZP_08099419.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323311470|gb|EGA64622.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 447

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 139/388 (35%), Positives = 206/388 (53%), Gaps = 10/388 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + K T IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 5   LHFKDLGLDNRLLKNLKHFDFKKATEIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 64

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   + PR +IL PTRELA QV                L++GG  F  Q K L
Sbjct: 65  HKSLKTKAFSAKDPRAVILAPTRELAKQVYGELRSMLGGLTYDATLIVGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGR+ DH     L ++ +E LV+DEADRMLD+GF P ++ I +     R 
Sbjct: 125 RRYPKFIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRR 184

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+   E+  ++   L  PKRI +   S   + I   F         K A+L++
Sbjct: 185 QTLMFSATLDHAEVNDIAFEMLDAPKRIAIGAGSEEHKDITQKFYLC-DHLDHKEAILER 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +LQ  D  K  IIF   + +   L   L ++     A+ G + Q  R  I+S F+    +
Sbjct: 244 VLQEAD-YKQLIIFTATRADTERLTAKLNEKKLKAVALSGGLTQTQRNTIMSQFERAVFK 302

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLDI +V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D    
Sbjct: 303 ILVTTDIASRGLDIANVTHVVNFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSF 362

Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNP 380
             +E  +++ + +     L G    L P
Sbjct: 363 KRVEAFLQQDLSFSELEGLKGKFKGLRP 390


>gi|323302724|gb|EGA56530.1| Dbp1p [Saccharomyces cerevisiae FostersB]
          Length = 617

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 203/364 (55%), Gaps = 19/364 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF+   L   ++  +  A + KPTP+Q  +IP+V +  D+   AQTG+GKT  F+ P+ 
Sbjct: 154 LDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLF 213

Query: 61  TIL---------EKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
           T L         EK ++   R   P  L+L PTRELA Q+ +   K+     +   ++ G
Sbjct: 214 TELFRSGPSPVPEKAQSFYSRKGYPXALVLAPTRELATQIFEEARKFTYRSWVRPCVVYG 273

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G P   Q ++++RG D+L+ TPGR+ D   RGK+ + NI+ LV+DEADRMLDMGF P I+
Sbjct: 274 GAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIR 333

Query: 169 NITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           +I           RQTL+FSAT   ++Q ++ +FL N   + V    ST+E I    +  
Sbjct: 334 HIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYV 393

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                KK ALL  L      +   +IF   K+    L   L  Q F   AIHG+  Q  R
Sbjct: 394 -DDMDKKSALLDLLSAEHKGLT--LIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAER 450

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + LS FK     ++VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G 
Sbjct: 451 ERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGV 510

Query: 345 AFTL 348
           A + 
Sbjct: 511 ATSF 514


>gi|310789728|gb|EFQ25261.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 551

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 203/373 (54%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 130 FDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 189

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 190 INAQPLLAPGDG----PIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQI 245

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 246 RDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 305

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E++ ++ +FL +  ++ + +    A       V    +  K+  +++
Sbjct: 306 DRQTLMWSATWPKEVRALASDFLTDFIQVNIGSLELAANHRITQVVEVVNESEKRDRMIK 365

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L +  D  +N + IF   K+    +   L + G+   +IHG+  Q  R  +L  FK G 
Sbjct: 366 HLEKMMDNKENKVLIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGK 425

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+A+RG+D+ ++ HV N+D PN +E+YIHRIGRTGRAG  G A T    ++ K
Sbjct: 426 SPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAMGTAVTFFTTDNSK 485

Query: 356 HI-DAIEKLIEKK 367
              D +  L E K
Sbjct: 486 QARDLVNVLREAK 498


>gi|225579817|gb|ACN94094.1| unknown [Drosophila melanogaster]
          Length = 1227

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 145/451 (32%), Positives = 242/451 (53%), Gaps = 24/451 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 515 WAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRH 574

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 +E G   +     +I+ PTREL  Q+  +  K+ K+  L    + GG     Q 
Sbjct: 575 ILDQPSMEDGDGAI----AIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQI 630

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 631 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDN 690

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQYSKK 231
           V   RQT++FSAT   +++ ++   L+ P  + V   S   + +E   V     A++ K 
Sbjct: 691 VRPDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFK- 749

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +F
Sbjct: 750 ---LLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDF 806

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G ++L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  
Sbjct: 807 KSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITP 866

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           E  ++   I + ++     +  +L +L    + +  A+            K   FD ++ 
Sbjct: 867 EQSRYAGDIIRAMDLSGTLIPAELQALWTEYKALQEAEGKTVHTGGGFSGKGFKFDEQEF 926

Query: 412 NYSS-----QKSHIPLKESEKISKLQQDIQE 437
           N +      QK+ + L +S+    ++QDI +
Sbjct: 927 NAAKESKKLQKAALGLADSDDEEDIEQDIDQ 957


>gi|225579772|gb|ACN94054.1| unknown [Drosophila melanogaster]
          Length = 1224

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 145/451 (32%), Positives = 242/451 (53%), Gaps = 24/451 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 512 WAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRH 571

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 +E G   +     +I+ PTREL  Q+  +  K+ K+  L    + GG     Q 
Sbjct: 572 ILDQPSMEDGDGAI----AIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQI 627

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 628 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDN 687

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQYSKK 231
           V   RQT++FSAT   +++ ++   L+ P  + V   S   + +E   V     A++ K 
Sbjct: 688 VRPDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFK- 746

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +F
Sbjct: 747 ---LLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDF 803

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G ++L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  
Sbjct: 804 KSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITP 863

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           E  ++   I + ++     +  +L +L    + +  A+            K   FD ++ 
Sbjct: 864 EQSRYAGDIIRAMDLSGTLIPAELQALWTEYKALQEAEGKTVHTGGGFSGKGFKFDEQEF 923

Query: 412 NYSS-----QKSHIPLKESEKISKLQQDIQE 437
           N +      QK+ + L +S+    ++QDI +
Sbjct: 924 NAAKESKKLQKAALGLADSDDEEDIEQDIDQ 954


>gi|225579763|gb|ACN94046.1| unknown [Drosophila melanogaster]
 gi|225579781|gb|ACN94062.1| unknown [Drosophila melanogaster]
 gi|225579826|gb|ACN94102.1| unknown [Drosophila melanogaster]
 gi|225579835|gb|ACN94110.1| unknown [Drosophila melanogaster]
 gi|225579853|gb|ACN94126.1| unknown [Drosophila melanogaster]
 gi|225579862|gb|ACN94134.1| unknown [Drosophila melanogaster]
 gi|225579889|gb|ACN94158.1| unknown [Drosophila melanogaster]
 gi|225579898|gb|ACN94166.1| unknown [Drosophila melanogaster]
 gi|225579916|gb|ACN94182.1| unknown [Drosophila melanogaster]
 gi|225579934|gb|ACN94198.1| unknown [Drosophila melanogaster]
 gi|225579952|gb|ACN94214.1| unknown [Drosophila melanogaster]
 gi|225579961|gb|ACN94222.1| unknown [Drosophila melanogaster]
          Length = 1224

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 145/451 (32%), Positives = 242/451 (53%), Gaps = 24/451 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 512 WAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRH 571

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 +E G   +     +I+ PTREL  Q+  +  K+ K+  L    + GG     Q 
Sbjct: 572 ILDQPSMEDGDGAI----AIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQI 627

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 628 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDN 687

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQYSKK 231
           V   RQT++FSAT   +++ ++   L+ P  + V   S   + +E   V     A++ K 
Sbjct: 688 VRPDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFK- 746

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +F
Sbjct: 747 ---LLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDF 803

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G ++L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  
Sbjct: 804 KSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITP 863

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           E  ++   I + ++     +  +L +L    + +  A+            K   FD ++ 
Sbjct: 864 EQSRYAGDIIRAMDLSGTLIPAELQALWTEYKALQEAEGKTVHTGGGFSGKGFKFDEQEF 923

Query: 412 NYSS-----QKSHIPLKESEKISKLQQDIQE 437
           N +      QK+ + L +S+    ++QDI +
Sbjct: 924 NAAKESKKLQKAALGLADSDDEEDIEQDIDQ 954


>gi|225718584|gb|ACO15138.1| Probable ATP-dependent RNA helicase DDX47 [Caligus clemensi]
          Length = 470

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 137/370 (37%), Positives = 224/370 (60%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+DLGL+ +V+C   ++ G+  P+ IQ + IP+ L   DV G+A+TG+GKT +F LP+L 
Sbjct: 32  FSDLGLT-EVLCEACESQGWKTPSKIQKEAIPVALTGRDVIGLAETGSGKTGAFALPVLQ 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     LIL PTRELA Q+++ FEK GK+  +   +L+GG+   +Q   L +
Sbjct: 91  ALLEKPQRLF---ALILTPTRELAYQISETFEKLGKSIGIKCGVLVGGMDMMSQALVLGK 147

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--R 178
              +++ TPGR++DH    K   + +++ L++DEADR+L+M F   +  I S +P    R
Sbjct: 148 KPHIIVATPGRLIDHMENTKGFDLRSLKYLIMDEADRILNMDFEIEVDKILSSLPRGEGR 207

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           + +LFSATMT ++ K+    LQNP R+EV++   T + +   ++    +Y K+  L+  +
Sbjct: 208 KNMLFSATMTKKVAKLQRASLQNPVRVEVSSKYQTVDKLLQYYLFIPLKY-KEMYLVHII 266

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             ++    + IIF +     + L   L   GF+   ++G + Q  R+  L+ FK  +  +
Sbjct: 267 --NELAGNSFIIFSSTCSGTLKLALLLRNLGFTAIPLNGQMSQNKRLASLNKFKTKSRSI 324

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR G+A T V + D++   
Sbjct: 325 LIATDVASRGLDIPHVDIVINYDIPTHSKDYIHRVGRTARAGRSGRAITFVCQYDVELYQ 384

Query: 359 AIEKLIEKKV 368
            IE LI KK+
Sbjct: 385 RIETLIGKKL 394


>gi|198452173|ref|XP_001358660.2| GA20653 [Drosophila pseudoobscura pseudoobscura]
 gi|198131816|gb|EAL27801.2| GA20653 [Drosophila pseudoobscura pseudoobscura]
          Length = 743

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 123/347 (35%), Positives = 202/347 (58%), Gaps = 4/347 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG--- 66
           P ++  +   G+ KP+PIQ +  P++L+ HD+ GIAQTGTGKT +F+LP +   E     
Sbjct: 318 PDLLGEIEKQGFPKPSPIQSQAWPILLKGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSIP 377

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +      L+L PTRELA Q+    +KY    ++    + GG     Q   +ERGA+++
Sbjct: 378 RGQRGGANVLVLAPTRELALQIEMEVKKYSFR-DMRAVCVYGGGCRRMQISDVERGAEII 436

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           ICTPGR+ D      + +++I  LV+DEADRMLDMGF P I+ +   +   RQT++ SAT
Sbjct: 437 ICTPGRLNDLVQAKVIDVSSITYLVLDEADRMLDMGFEPQIRKVLMDIRPDRQTIMTSAT 496

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
               +++++++++ NP ++ V +    A       +      S+K  +++  +++     
Sbjct: 497 WPPGVRRLAQSYMNNPIQVCVGSLDLAATHSVKQVIELLEDESEKYGIIKSFIKNMTKTD 556

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+FC +K    +L   L   GF    IHG+ DQ  R + +++ K G +++++A+D+A+
Sbjct: 557 KIIVFCGRKARADDLSSDLTLDGFMTQCIHGSRDQSDREQAIADIKSGVVRILIATDVAS 616

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + + + + D
Sbjct: 617 RGLDIEDISHVINYDFPRNIEEYVHRVGRTGRAGRTGTSISFITRSD 663


>gi|169409547|gb|ACA57893.1| DEAD box polypeptide 43 (predicted) [Callicebus moloch]
          Length = 680

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 135/361 (37%), Positives = 210/361 (58%), Gaps = 7/361 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE---KG 66
           P+V+  +  +G+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT  +++P    L+     
Sbjct: 249 PEVMENIKKSGFKKPTPIQAQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLDLQPTV 308

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           + +   P  L+L PTRELA QV     KY     L    + GG   + Q ++L +G D++
Sbjct: 309 KGQRNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIEELRKGVDII 367

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + NI  LV+DEAD+MLDMGF P I  I   V   RQT++ SAT
Sbjct: 368 IATPGRLNDLQMNNFVNLRNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTIMTSAT 427

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
               + ++++++L+ P  + V T    A  ++E   + T  +  +K   +Q  LQS  + 
Sbjct: 428 WPRSVHRLAQSYLKEPMLVYVGTLDLVAVSSVEQNIIVTTEE--EKWIHIQTFLQSMSST 485

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F ++K    +L   L     S+ ++HG+ +QR R K L NFK G +++++A+DLA
Sbjct: 486 DKVIVFVSRKAVADHLSSELILGNMSIESLHGDREQRDREKALENFKTGKVRILIATDLA 545

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLD+ D+ HV+NFD P   E Y+HRIGRTGRAGR G + T + + D +    +  +++
Sbjct: 546 SRGLDVHDITHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTMTRNDWRFAPELVNILQ 605

Query: 366 K 366
           +
Sbjct: 606 R 606


>gi|156976352|ref|YP_001447258.1| ATP-dependent RNA helicase [Vibrio harveyi ATCC BAA-1116]
 gi|156527946|gb|ABU73031.1| hypothetical protein VIBHAR_05125 [Vibrio harveyi ATCC BAA-1116]
          Length = 447

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 136/388 (35%), Positives = 208/388 (53%), Gaps = 10/388 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + K T IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 5   LQFKDLGLDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 64

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L+      + PR +IL PTRELA QV               AL++GG  F  Q K L
Sbjct: 65  HKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLGGLTYDAALILGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGR+ DH     L ++ +E LV+DEADRMLD+GF P ++ I       R 
Sbjct: 125 RRYPKFIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHKAAKHRRR 184

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+   E+  ++   L  PKRI +   +   + I   F         K A+L++
Sbjct: 185 QTLMFSATLDHAEVNDIASEMLNAPKRIAIGVSNEEHKDITQKFYLC-DHLDHKEAILER 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+  +  +  IIF   + +   L + L ++     A+ GN++Q  R  I+S F+    +
Sbjct: 244 VLEEAE-YRQVIIFTATRDDTERLTNKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFK 302

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLDI  V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D    
Sbjct: 303 ILVTTDVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSF 362

Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNP 380
             +E  +++ +++     L G    L P
Sbjct: 363 KRVETYLQQDLNFSVFEDLKGKFKGLKP 390


>gi|118582049|sp|Q0UWA6|DED1_PHANO RecName: Full=ATP-dependent RNA helicase DED1
          Length = 696

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 136/345 (39%), Positives = 201/345 (58%), Gaps = 21/345 (6%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK------------- 65
           +GY  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L    +             
Sbjct: 219 SGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQAFQNGPSPPPTAQAGG 278

Query: 66  -GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
            GR R   P +LIL PTREL +Q+ D   K+     +   ++ GG    +Q +++ERG D
Sbjct: 279 YGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 338

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--VPFT--RQT 180
           +L+ TPGR++D   RG++ + +I+ LV+DEADRMLDMGF P I+ I     +P T  RQT
Sbjct: 339 LLVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPTAGRQT 398

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT   ++Q ++ +FL+    + V    ST+E I       Y + + K ++L  +L 
Sbjct: 399 LMFSATFPRDIQMLARDFLKEYIFLSVGRVGSTSENITQKI--EYVEDADKRSVLLDILH 456

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +     + +IF   K+   +L   L  QGF   +IHG+  QR R K L  F+ G   ++V
Sbjct: 457 THGAGLS-LIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRSGRCPILV 515

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           A+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G A
Sbjct: 516 ATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIA 560


>gi|47086809|ref|NP_997777.1| probable ATP-dependent RNA helicase DDX5 [Danio rerio]
 gi|37362204|gb|AAQ91230.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Danio rerio]
          Length = 518

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 136/356 (38%), Positives = 199/356 (55%), Gaps = 14/356 (3%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           PK V  V+    +  PTPIQ +  P+ L   D+ GIAQTG+GKT S++LP +        
Sbjct: 104 PKYVMDVITKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPF 163

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE G      P  L+L PTRELA QV     +YGK   +    + GG P   Q + LERG
Sbjct: 164 LEHGDG----PICLVLAPTRELAQQVQQVAAEYGKASRIKSTCIYGGAPQGPQIRDLERG 219

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 220 VEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 279

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +SAT   E+++++E+FL+   +I V     S+    ++   V    +   K   L + + 
Sbjct: 280 WSATWPKEVRQLAEDFLKEYIQINVGALQLSANHNILQIVDVCNDGEKEDKLIRLLEEIM 339

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+   K  IIF   K+   +L   + + G+    IHG+ +Q+ R  +L+ FK G   +++
Sbjct: 340 SEKENKT-IIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKAPILI 398

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           A+D+A+RGLD+ DV  V NFD PN +E+YIHRIGRT R+ + G A+T     ++K 
Sbjct: 399 ATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQ 454


>gi|218295270|ref|ZP_03496106.1| DEAD/DEAH box helicase domain protein [Thermus aquaticus Y51MC23]
 gi|218244473|gb|EED10998.1| DEAD/DEAH box helicase domain protein [Thermus aquaticus Y51MC23]
          Length = 513

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 128/331 (38%), Positives = 191/331 (57%), Gaps = 8/331 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F D  L  ++  A+   G   PTPIQ   +PL L+  D+ G A+TGTGKT +F LP+ 
Sbjct: 1   MEFKDFPLKDEIKEALYGRGITAPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE  R R R PR L+L PTRELA QVA          +L V  + GG  +  Q ++L+
Sbjct: 61  QRLEASRQRGRKPRALVLTPTRELALQVASEVAALAP--HLKVVPVYGGTGYGKQKEELQ 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GADV++ TPGR LD+  +G L ++ +EI V+DEAD ML MGF   ++ I +  P +RQT
Sbjct: 119 KGADVVVATPGRALDYLRQGVLDLSEVEIAVLDEADEMLSMGFEEEVEAILAATPPSRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+    ++++E ++++P  I V          E     T      + ALL  LL 
Sbjct: 179 LLFSATLPTWARRLAERYMKSPVVINVVKEEGVTYQEEAILAPT-----DRLALLSDLLY 233

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   K  I+F   K     +   L + G +  AIHG++ Q  R +++  F+EG ++++V
Sbjct: 234 VK-APKRAIVFTKTKAETEEVATGLLRLGHAARAIHGDLSQADRERVMRAFREGEVRVLV 292

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
           A+D+AARGLDIP+V  V ++ +P++ E Y H
Sbjct: 293 ATDVAARGLDIPEVDLVVHYRLPDKPETYQH 323


>gi|111024195|ref|YP_707167.1| ATP-dependent RNA helicase [Rhodococcus jostii RHA1]
 gi|110823725|gb|ABG99009.1| ATP-dependent RNA helicase [Rhodococcus jostii RHA1]
          Length = 465

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 206/371 (55%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F  LGL P V+   LD +G   P PIQ  TIP VL   DV G A TG+GKT +F LPML 
Sbjct: 16  FLALGL-PAVMTHALDRSGIGAPFPIQAATIPDVLAGRDVLGRAPTGSGKTLAFGLPMLV 74

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+   +R   PR ++L PTRELA Q+    ++   +  L VA ++GGIP + Q + L R
Sbjct: 75  RLKGAASRRGFPRGIVLVPTRELALQIERALDEPALSVGLRVANVVGGIPIKRQVEILSR 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+LI TPGR+ DH  +G + ++++ +L +DEAD M D+GF+P +  I    P   Q L
Sbjct: 135 GVDLLIATPGRLADHVAQGSVSLDDVTVLALDEADHMADLGFMPQVTTILDKTPADGQRL 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  E+  +   +L++P        +++  T+ H  +  +     K +++  +   
Sbjct: 195 LFSATLDGEVDTLVRRYLRDPVTHSTAPVTASVSTMRHHLL--FVDRVDKKSVVAHI--- 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   ++F   K  V  L   L + G S  A+HG   Q +R + L +F EGT  ++VA
Sbjct: 250 GSRVGRTLMFVRTKYGVDRLAQQLHEAGISAGALHGGKAQNNRTRTLESFAEGTTPVLVA 309

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ + D+  V + D P   ++Y+HR GRT RAG  G   TLV +++   ++ + 
Sbjct: 310 TDVAARGIHVDDISLVVHVDPPADPKDYLHRAGRTARAGESGVVVTLVTEDERAEVEKLT 369

Query: 362 KLIEKKVDWLN 372
           +    +VD + 
Sbjct: 370 RKAGIEVDGVR 380


>gi|320664062|gb|EFX31249.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 457

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 134/364 (36%), Positives = 212/364 (58%), Gaps = 8/364 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GK A+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKMAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCATEEAQRANIISDMLQI 362

Query: 367 KVDW 370
           K++W
Sbjct: 363 KLNW 366


>gi|6325138|ref|NP_015206.1| Dbp1p [Saccharomyces cerevisiae S288c]
 gi|1706311|sp|P24784|DBP1_YEAST RecName: Full=ATP-dependent RNA helicase DBP1; AltName: Full=DEAD
           box protein 1; AltName: Full=Helicase CA1
 gi|1163095|gb|AAB68243.1| Dbp1p: putative ATP-dependent DEAD box RNA helicase [Saccharomyces
           cerevisiae]
 gi|256274187|gb|EEU09095.1| Dbp1p [Saccharomyces cerevisiae JAY291]
 gi|259150039|emb|CAY86842.1| Dbp1p [Saccharomyces cerevisiae EC1118]
 gi|285815423|tpg|DAA11315.1| TPA: Dbp1p [Saccharomyces cerevisiae S288c]
 gi|323346178|gb|EGA80468.1| Dbp1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 617

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 203/364 (55%), Gaps = 19/364 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF+   L   ++  +  A + KPTP+Q  +IP+V +  D+   AQTG+GKT  F+ P+ 
Sbjct: 154 LDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLF 213

Query: 61  TIL---------EKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
           T L         EK ++   R   P  L+L PTRELA Q+ +   K+     +   ++ G
Sbjct: 214 TELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYG 273

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G P   Q ++++RG D+L+ TPGR+ D   RGK+ + NI+ LV+DEADRMLDMGF P I+
Sbjct: 274 GAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIR 333

Query: 169 NITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           +I           RQTL+FSAT   ++Q ++ +FL N   + V    ST+E I    +  
Sbjct: 334 HIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYV 393

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                KK ALL  L      +   +IF   K+    L   L  Q F   AIHG+  Q  R
Sbjct: 394 -DDMDKKSALLDLLSAEHKGLT--LIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAER 450

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + LS FK     ++VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G 
Sbjct: 451 ERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGV 510

Query: 345 AFTL 348
           A + 
Sbjct: 511 ATSF 514


>gi|195478796|ref|XP_002100656.1| GE17181 [Drosophila yakuba]
 gi|194188180|gb|EDX01764.1| GE17181 [Drosophila yakuba]
          Length = 1215

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 131/365 (35%), Positives = 209/365 (57%), Gaps = 19/365 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 504 WAQCGVSKKEMDVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRH 563

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G   +     +I+ PTREL  Q+  +  K+ K+  L    + GG     Q 
Sbjct: 564 ILDQPSLEDGDGAI----AIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQI 619

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 620 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDN 679

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA--TYAQYSKK 231
           V   RQT++FSAT   +++ ++   L+ P  + V   S   + +E   V     A++ K 
Sbjct: 680 VRPDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKDVEQNVVILNDDAKFFKL 739

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL  + Q   ++   I+F ++++N   L   L K  +   ++HG IDQ  R   + +F
Sbjct: 740 LELLG-IYQEAGSI---IVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDF 795

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G ++L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  
Sbjct: 796 KSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITP 855

Query: 352 EDIKH 356
           E  ++
Sbjct: 856 EQSRY 860


>gi|194903791|ref|XP_001980939.1| GG17436 [Drosophila erecta]
 gi|190652642|gb|EDV49897.1| GG17436 [Drosophila erecta]
          Length = 793

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 149/387 (38%), Positives = 220/387 (56%), Gaps = 23/387 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ L+  +   V  A Y KPTP+Q   IP+++   D+   AQTG+GKTA+F++P+L  
Sbjct: 292 FDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQ 351

Query: 62  ILEKGRA-----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           + E G             R + P  L+L PTRELA Q+ +  +K+     +  A+L GG 
Sbjct: 352 MYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGN 411

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L+RG  +++ TPGR+ D   RGK+ ++NI  LV+DEADRMLDMGF P I+ I
Sbjct: 412 NTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLDNIRFLVLDEADRMLDMGFEPQIRRI 471

Query: 171 TSLV--PFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
              +  P T  RQTL+FSAT   ++Q+++ +FL N   + V    ST+E I    +  Y 
Sbjct: 472 VEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYE 531

Query: 227 --QYSKKCALLQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             + S    LL  +    +  K+   +IF   KK   +L   L +    V +IHG+  Q+
Sbjct: 532 PDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQK 591

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 592 EREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNL 651

Query: 343 GKAFTLVAKEDIKHI--DAIEKLIEKK 367
           G A +   +++ ++I  D +E LIE K
Sbjct: 652 GVATSFFNEKN-RNICSDLLELLIETK 677


>gi|301612896|ref|XP_002935944.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 isoform 1
           [Xenopus (Silurana) tropicalis]
          Length = 1049

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 145/447 (32%), Positives = 240/447 (53%), Gaps = 25/447 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++    Y KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 373 WVQCGISMKILNSLKKHAYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 432

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 433 IMDQRPLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 488

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 489 AELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDN 548

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKC 232
           +   RQT++FSAT    ++ ++   L  P  ++V   S     +E H  V    +   K 
Sbjct: 549 IRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEEKKFLKL 608

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L    Q +  +   IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK
Sbjct: 609 LELLGHYQEKGAV---IIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFK 665

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G  +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G AFT + ++
Sbjct: 666 NGVCKLLVATSVAARGLDVKQLILVINYACPNHYEDYVHRAGRTGRAGNKGYAFTFITED 725

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             ++   I K +E     L+G  +++   LE++        +    I +K++GF  +   
Sbjct: 726 QARYAGDIIKALE-----LSG--TAVPAELEQLWNEFKEQQKAEGKIIKKTSGFSGKGFK 778

Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439
           +   +  +   E +K+ K    +Q++D
Sbjct: 779 FDETEQALA-NERKKLQKAALGLQDSD 804


>gi|281347447|gb|EFB23031.1| hypothetical protein PANDA_001323 [Ailuropoda melanoleuca]
          Length = 613

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 220/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 133 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 192

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 193 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 252

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 253 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 312

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 313 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 371

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + S K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 372 -WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 430

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ ++ARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 431 REEALHQFRSGKSPILVATAVSARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 490

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 491 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 522


>gi|197336796|ref|YP_002158115.1| ATP-dependent RNA helicase [Vibrio fischeri MJ11]
 gi|197314048|gb|ACH63497.1| ATP-dependent RNA helicase [Vibrio fischeri MJ11]
          Length = 460

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 135/388 (34%), Positives = 211/388 (54%), Gaps = 10/388 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +      KPT IQ K +P+ +   DV   ++TG+GKT +FVLPML
Sbjct: 16  LQFKDLGLDNRLLKNLAHQNIKKPTEIQRKAVPVAIAGKDVLASSKTGSGKTLAFVLPML 75

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K ++  +  PR +IL PTRELA QV  +             L+ GG  F  Q   L
Sbjct: 76  HKSLKTKSFSKNDPRAVILAPTRELAKQVYSHLRAMLGGLTYDATLITGGENFNDQVNAL 135

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            +    ++ TPGR+ DH     L ++ +E L++DEADRMLD+GF  ++Q I       R 
Sbjct: 136 RKHPKFIVATPGRLADHLEHQSLYLDGLETLILDEADRMLDLGFAEHLQKIHKAASHRRR 195

Query: 179 QTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+  D + K + N L NPKRI V   +   + I   F         K A+L +
Sbjct: 196 QTLMFSATLDHDAVNKFAGNMLDNPKRISVGLSNDEHKDITQRFYLC-DHLDHKQAILNK 254

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++++D  +  +IF   + +   L   L ++     A+ G+++Q +R  I+S F+    +
Sbjct: 255 IIETEDYFQI-MIFTATRSDTDRLTKLLNEENLKAVALSGDMNQTARNNIMSQFERRVHK 313

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLD+  V HV NFD+P   E Y+HR+GRTGRAG+ G A +LV  +D +  
Sbjct: 314 ILVTTDVASRGLDLTSVTHVINFDMPKHMEEYVHRVGRTGRAGKKGTAISLVGPKDWESF 373

Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNP 380
             +E  +++ + +     L G    L P
Sbjct: 374 KRVETFLQQDLSFSVFEELKGKFKGLKP 401


>gi|90409157|ref|ZP_01217275.1| lipoate-protein ligase A [Psychromonas sp. CNPT3]
 gi|90309743|gb|EAS37910.1| lipoate-protein ligase A [Psychromonas sp. CNPT3]
          Length = 321

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 127/325 (39%), Positives = 199/325 (61%), Gaps = 5/325 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLSP+++ A+ + GY KPTPIQ K IP++L+  DV   AQTGTGKT +FVLP+L
Sbjct: 1   MSFSKLGLSPQILQAISELGYKKPTPIQEKAIPVILKGRDVIACAQTGTGKTGAFVLPIL 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L ++   R +  R LIL PTRELA Q+  N + Y ++ +LT   + GG+   +Q + L
Sbjct: 61  ERLKDEPEIRAKRIRVLILTPTRELAIQIEANVKAYSQHLSLTSLAMYGGVDDTSQKEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + I+ILV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IAGVDILVATPGRLLDMYTQRAIHFDEIQILVLDEADRMLDMGFIGDINKILERLPEIRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++ +++  ++N  +I +    +  +  ++          KK ALL  L+
Sbjct: 181 NLLFSATLSPKVRFLAKTAIENAVQITIREKHNKPKINQYLIP---IDKDKKSALLSHLI 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++     +IF   K+    L   LEK+G    + H    Q  R  +L++FK GT+  +
Sbjct: 238 -TENKWDQALIFIETKRGAAKLVSQLEKRGVKAESFHSGRSQSVRETLLADFKAGTLAYL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPN 324
           VA+ +A+RG+DI ++ +V N+D+P+
Sbjct: 297 VATGVASRGIDIDNLNYVINYDLPD 321


>gi|71665094|ref|XP_819521.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70884825|gb|EAN97670.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 511

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 138/393 (35%), Positives = 228/393 (58%), Gaps = 11/393 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  +++ A  +AG+  PT IQ  TIP+V +  D+ G+AQTG+GKT ++VLP++  
Sbjct: 39  FKALGLCEELISACAEAGWQNPTRIQAATIPVVKEGRDIIGVAQTGSGKTGAYVLPLVNW 98

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +++V     L++ PTRELA QV   F   G +  L VA L+GG     Q  +L + 
Sbjct: 99  L-LTQSKVPYLSVLVMVPTRELAQQVTAQFVMLGHSVGLRVATLVGGADMVDQACELSKR 157

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             V++ TPGRI DH    K   +  +  LV+DEAD+MLDM +   I  I   +P +RQT+
Sbjct: 158 PHVVVGTPGRIKDHLQNTKGFQLVKLHALVLDEADKMLDMDYEKEIDAILEHLPHSRQTM 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ ++ +  L +P  +EV+  ++T +T++  +V  +  +++    L   L +
Sbjct: 218 LFSATLNTKIDRLQKASLNDPVLLEVHRKNTTVDTLKQYYV--FCPFAQMLPYLHLYL-T 274

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++T  + ++FC     V  +  +L   G     + G +DQ +R   L+ FKEG ++++V 
Sbjct: 275 RETGNHILVFCRSAALVHRITLTLRILGHQALPLMGRMDQTNRNIALTKFKEGKVRILVC 334

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A RGLDI     V N+ +P+R E+YIHR+GRT RAG  GKA  ++++ DI  +  IE
Sbjct: 335 TDVAQRGLDISHTDVVVNYALPDRVEDYIHRVGRTARAGAQGKAVNIISQYDILLLQRIE 394

Query: 362 KLIEKKV-DW--LNGDLSSLNPPLEKIDIAQHN 391
                K  +W    GD++++   L++++ A+  
Sbjct: 395 ATTGVKCEEWPVQEGDVAAV---LQRVEDAEQE 424


>gi|290508239|ref|ZP_06547610.1| ATP-dependent RNA helicase SrmB [Klebsiella sp. 1_1_55]
 gi|289777633|gb|EFD85630.1| ATP-dependent RNA helicase SrmB [Klebsiella sp. 1_1_55]
          Length = 443

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 136/352 (38%), Positives = 205/352 (58%), Gaps = 6/352 (1%)

Query: 18  DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTL 76
           D G+ +PT IQ   IP  L   D+ G A TGTGKTA+++LP L  +L+  R +   PR L
Sbjct: 21  DKGFTRPTAIQAAAIPPALDGRDILGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRIL 80

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           IL PTRELA QVAD+  +  K+ +L +A + GG+ +    +      D+++ T GR+L +
Sbjct: 81  ILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQY 140

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQKVS 195
                     +E LV+DEADRMLDMGF   I+ I     + +QT+LFSAT+  D ++  +
Sbjct: 141 IKEENFDCRAVETLVLDEADRMLDMGFAQDIETIAGETRWRKQTMLFSATLEGDAIKDFA 200

Query: 196 ENFLQNPKRIEVN-TPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           E  L+ P  +EV+ TPS+      H +         K ALL  LL+  +  ++ I+F  +
Sbjct: 201 ERLLEEP--VEVSATPSTRERKKIHQWYYRADDIEHKTALLIHLLKQPEATRS-IVFVRK 257

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           ++ V  L   L + G + C + G + Q  R + +    +G + +++A+D+AARG+DIPDV
Sbjct: 258 RERVHELAAKLHEAGINTCWLEGEMVQIKRNEAIKRLTDGRVNVLIATDVAARGIDIPDV 317

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
            HVFNFD+P  A+ Y+HRIGRTGRAG+ G A +LV   D   +  I + +E+
Sbjct: 318 SHVFNFDMPRTADIYLHRIGRTGRAGKKGIAISLVEAHDHLLLGKIGRYVEE 369


>gi|190407839|gb|EDV11104.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
          Length = 617

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 203/364 (55%), Gaps = 19/364 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF+   L   ++  +  A + KPTP+Q  +IP+V +  D+   AQTG+GKT  F+ P+ 
Sbjct: 154 LDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLF 213

Query: 61  TIL---------EKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
           T L         EK ++   R   P  L+L PTRELA Q+ +   K+     +   ++ G
Sbjct: 214 TELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYG 273

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G P   Q ++++RG D+L+ TPGR+ D   RGK+ + NI+ LV+DEADRMLDMGF P I+
Sbjct: 274 GAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIR 333

Query: 169 NITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           +I           RQTL+FSAT   ++Q ++ +FL N   + V    ST+E I    +  
Sbjct: 334 HIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYV 393

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                KK ALL  L      +   +IF   K+    L   L  Q F   AIHG+  Q  R
Sbjct: 394 -DDMDKKSALLDLLSAEHKGLT--LIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAER 450

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + LS FK     ++VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G 
Sbjct: 451 ERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGV 510

Query: 345 AFTL 348
           A + 
Sbjct: 511 ATSF 514


>gi|323172286|gb|EFZ57923.1| ATP-independent RNA helicase dbpA [Escherichia coli LT-68]
          Length = 457

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 138/377 (36%), Positives = 217/377 (57%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTL FSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLRFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAVISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W     +S   PLE
Sbjct: 363 KLNWQTPPANSSILPLE 379


>gi|322695045|gb|EFY86860.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Metarhizium
           acridum CQMa 102]
          Length = 1161

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 217/371 (58%), Gaps = 8/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  GL+ + +  + + GY KPT IQ++ IP ++   DV G+A+TG+GKT +F+LPM   
Sbjct: 536 WAQCGLTRQTLDVIDNLGYEKPTTIQMQAIPTLMSGRDVVGVAKTGSGKTVAFLLPMFRH 595

Query: 62  ILEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++   +    P  LI+ PTRELA Q+  + + + K+  L      GG P   Q  +L+
Sbjct: 596 IMDQPPIKDTDGPIGLIMTPTRELATQIHRDCKPFLKSMGLRAVCAYGGAPIRDQIAELK 655

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N+G++  +  +  +V+DEADRM DMGF P +  I + +   
Sbjct: 656 RGAEIIVCTPGRMIDLLAANQGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIFAGMRPD 715

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QT+LFSATM   +  +++  L++P  I V   S  A+ IE   V    + +K   +L+ 
Sbjct: 716 KQTILFSATMPRIIDSLTKKVLKSPVEITVGGRSVVAKEIEQ-IVEVREESTKFFRVLEL 774

Query: 238 L--LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L  L  +D     +IF ++++   +L   L  +G+   +IHG  DQ  R   +S+FK+G 
Sbjct: 775 LGELYDRDEDARALIFVDRQEKADDLLKELMVKGYPCMSIHGGKDQVDRDSTISDFKKGV 834

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + L+VA+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T V  +   
Sbjct: 835 VPLLVATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGVAVTFVTPDQEN 894

Query: 356 HIDAIEKLIEK 366
               I K +E+
Sbjct: 895 CAPGIAKALEQ 905


>gi|156843946|ref|XP_001645038.1| hypothetical protein Kpol_1072p50 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380640|sp|A7TKR8|DED1_VANPO RecName: Full=ATP-dependent RNA helicase DED1
 gi|156115693|gb|EDO17180.1| hypothetical protein Kpol_1072p50 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 650

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 138/364 (37%), Positives = 204/364 (56%), Gaps = 19/364 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT---------ILEKGR-- 67
           A + KPTP+Q  ++P+V +  D+   AQTG+GKT  F+ P+L+         + E  R  
Sbjct: 178 ARFTKPTPVQKYSVPIVSRGRDLMACAQTGSGKTGGFLFPVLSESFKNGPSPMPESARKS 237

Query: 68  -ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
             +   P  L+L PTRELA Q+ D  +K+     +   ++ GG    +Q + L RG D+L
Sbjct: 238 FVKKAYPTALVLAPTRELATQIYDEAKKFTYRSWVRPTVVYGGSDIGSQIRDLSRGCDLL 297

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS---LVPF-TRQTLL 182
           + TPGR+ D   RG++ + N++ LV+DEADRMLDMGF P I+ I     + P   RQTL+
Sbjct: 298 VATPGRLSDLLERGRVSLANVKYLVLDEADRMLDMGFEPQIRQIVDGCDMPPVGERQTLM 357

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT  D++Q ++ +FL +   + V    ST+E I    +       KK  LL  L  S 
Sbjct: 358 FSATFPDDIQHLARDFLSDYIFLSVGKVGSTSENITQRILYV-EDMDKKSTLLDLLSASN 416

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D +   +IF   K+    L   L  Q F   AIHG+  Q  R + L+ FK G   L+VA+
Sbjct: 417 DGLT--LIFVETKRMADELTDFLIMQDFRATAIHGDRTQSERERALAAFKNGNANLLVAT 474

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
            +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A     + +   +  + +
Sbjct: 475 AVAARGLDIPNVTHVVNYDLPSDIDDYVHRIGRTGRAGNTGVATAFFNRGNRNIVKGMYE 534

Query: 363 LIEK 366
           L+ +
Sbjct: 535 LLAE 538


>gi|322703237|gb|EFY94849.1| ATP-dependent RNA helicase drs-1 [Metarhizium anisopliae ARSEF 23]
          Length = 944

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 136/362 (37%), Positives = 203/362 (56%), Gaps = 3/362 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  ++  +   G+ KPTPIQ KTIP+ L   DV G A TG+GKT +F +P+L  
Sbjct: 258 FQGMSLSRPILRGLAAVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTGAFFVPILER 317

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     ++   R ++L PTRELA Q  D   K  +  ++  +L +GG+  +AQ  +L   
Sbjct: 318 LLFRPKKIPTTRVVVLTPTRELAMQCHDVGTKLARYTDIKFSLAVGGLSLKAQEVELRLR 377

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D+++ TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 378 PDIIVATPGRFIDHMRNSASFNVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTM 437

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMT  + ++    L  P R+ V++   T  T+   FV     +  K+   L  L +
Sbjct: 438 LFSATMTSTVDRLIRVGLNKPVRLMVDSQKKTVTTLVQEFVRLRPGREDKRMGYLAHLCK 497

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +    +  IIF  QKK            G S   +HG+++Q  R+  +  F++G +  ++
Sbjct: 498 TF-YHERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQSQRISSVEAFRDGKVSYLL 556

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G A TL A+ D K + A 
Sbjct: 557 ATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRKGTAVTLAAEGDRKVVKAA 616

Query: 361 EK 362
            K
Sbjct: 617 VK 618


>gi|213402561|ref|XP_002172053.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000100|gb|EEB05760.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces japonicus
           yFS275]
          Length = 626

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 135/371 (36%), Positives = 210/371 (56%), Gaps = 21/371 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L+P ++  +  +GYV+PTP+Q  ++P+V    D+   AQTG+GKTA F+ P+L+
Sbjct: 163 EFTNPPLNPHLLTNIKLSGYVQPTPVQKYSVPIVTSGRDLMACAQTGSGKTAGFLFPILS 222

Query: 62  -ILEKG--------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
              ++G              R+R   P TLIL PTREL  Q  +   K+     +    +
Sbjct: 223 QAFDQGPAPIPHDEDSALGYRSRKAYPTTLILAPTRELVCQTHEESRKFCYRSWVRPCAV 282

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    AQ +++++G D+L  TPGR++D  +RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 283 YGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQ 342

Query: 167 IQNITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I++I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I    V
Sbjct: 343 IRHIVEGADMPGVEERQTLMFSATFPRDIQVLARDFLKDYVFLSVGRVGSTSENITQKVV 402

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             + +  +K + L  +L +       +IF   K+    L   L    F   +IHG+  QR
Sbjct: 403 --FVEDQEKRSYLLDILHTLPPEGLTLIFVETKRMADALTDFLLNSSFPATSIHGDRTQR 460

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   +MVA+ +A+RGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 461 ERERALELFRSGRSSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 520

Query: 343 GKAFTLVAKED 353
           G+A     + +
Sbjct: 521 GQAVAFFNRNN 531


>gi|268563805|ref|XP_002638939.1| Hypothetical protein CBG22166 [Caenorhabditis briggsae]
 gi|187022048|emb|CAP38818.1| hypothetical protein CBG_22166 [Caenorhabditis briggsae AF16]
          Length = 753

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 143/388 (36%), Positives = 209/388 (53%), Gaps = 33/388 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  + LS +++ A   AGY  PTPIQ   IP+ L   D+C  A TGTGKTA+FVLP+L
Sbjct: 143 VSFEQMNLSRQILKACAGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPIL 202

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          R L+L PTRELA QV   F K      L V L  GG+  +AQ   L 
Sbjct: 203 ERMIYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALR 262

Query: 121 RGADVLICTPGRILDH------FNRGKLLM-----------------NNIEILVIDEADR 157
            G DV++ TPGR++DH      FN   + +                  N+++LV+DEADR
Sbjct: 263 SGPDVVVATPGRLIDHLHNSPSFNLASIEVFLSLEKEKFRNSEIQESKNLKVLVLDEADR 322

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           ML+  F   +  +  L    RQTLLFSATMT+E+ +++   L+ P +I +N  + TA  +
Sbjct: 323 MLEEAFRDQMNELIRLCAENRQTLLFSATMTEEIDELASMSLKKPVKIFINENTDTALKL 382

Query: 218 EHCFVATYA-----QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
              F+   A     + S   AL+ +  Q+     N I+F   KK+   +   L   G  V
Sbjct: 383 RQEFIRIRAGRETDRESMVAALVTRTFQT-----NTIVFVRTKKDCQRMQILLGLLGIKV 437

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
             +  ++ Q  R++ LS FK+G I ++V++DLA+RGLDI  V  V N ++P   + YIHR
Sbjct: 438 GQMQSSLTQGQRIESLSKFKKGEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHR 497

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +GRT RAG+ G++ +LV +E+ K +  I
Sbjct: 498 VGRTARAGKAGRSISLVGEEERKLLKEI 525


>gi|304437212|ref|ZP_07397172.1| ATP-dependent RNA helicase DeaD [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304369704|gb|EFM23369.1| ATP-dependent RNA helicase DeaD [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 426

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 130/351 (37%), Positives = 198/351 (56%), Gaps = 12/351 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  LG+S  +   +   G  +PTP+Q + IP +    DV   AQTGTGKT +++LP+L  
Sbjct: 4   FDQLGISETLTALLQKQGITQPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLAYLLPLLAR 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I  +G A     + L++ PTRELA Q+    E   +   +   ++ GG   E Q +KL R
Sbjct: 64  IKPQGAA----AQALVIAPTRELAIQIERVAEPLAQPLGIGTVVIYGGADIERQKEKLRR 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH  RG L + ++  +V+DEAD ML MGFI  ++ +        Q  
Sbjct: 120 SPQLVIGTPGRLLDHVRRGTLALGSVNKVVLDEADEMLKMGFIEDVETLLGAAAQDYQLA 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQQLL 239
           LFSATM + + ++++ F+ NP  I +   + T   IE   +   A  +  + CA +    
Sbjct: 180 LFSATMPERIVRLTKRFMTNPAHIRLAGETVTLAAIEQVVIPVSAGDKLDRLCASI---- 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++     ++FC  K+    L   L ++G+ V A+ G++ Q  R  +L  F+   +Q++
Sbjct: 236 -NEEAPYLAMVFCATKERTRALMMELAQRGYLVDALSGDLTQTQRSFVLRQFRSAKLQIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
            A+D+AARGLDI  V HV+N+D+P    +YIHRIGRTGRAG  GKA TLVA
Sbjct: 295 CATDIAARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGTQGKAITLVA 345


>gi|312066551|ref|XP_003136324.1| RNA helicase [Loa loa]
 gi|307768519|gb|EFO27753.1| RNA helicase [Loa loa]
          Length = 952

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 133/352 (37%), Positives = 204/352 (57%), Gaps = 7/352 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G+  K++  +    Y KPTPIQ + IP ++   DV GIA+TG+GKT +F+LPM   
Sbjct: 294 WAQCGVEWKILSTLKKLEYKKPTPIQSQAIPAIISGRDVIGIAKTGSGKTLAFLLPMFRH 353

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL++     +  P  +I+ PTRELA Q      K+ K  ++ VA + GG+    Q   L+
Sbjct: 354 ILDQPELEEMDGPIAVIMSPTRELAMQTWKEANKFAKQLDIRVACVYGGVGISDQIGDLK 413

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA+V++CT GR+ D    N+GK+  +  +  LV+DEADRM DMGF P +  I + +   
Sbjct: 414 RGAEVVVCTVGRLTDMLAANKGKVTNLRRVTYLVLDEADRMFDMGFEPQVMKIVNNIRPD 473

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT   +++ ++   L  P  I V   S   + +    V    ++ K   LL+ 
Sbjct: 474 RQTVLFSATFPRQMEALARKILDKPIEIMVGGKSVVCDDVNQNVV-ILEEHQKMLKLLE- 531

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL       N ++F ++++   +L   L + G++   +HG IDQ  R   + ++K G I+
Sbjct: 532 LLGVYWENGNVLVFVDKQEKADDLVTQLMRSGYNCAPLHGGIDQFDRDSTILDYKAGKIK 591

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           L+VA+ +AARGLDI  +  V N+D PN  E+Y+HR+GRTGRAG  G A+T +
Sbjct: 592 LLVATSVAARGLDIKKLILVVNYDCPNHYEDYVHRVGRTGRAGNKGYAYTFI 643


>gi|195356214|ref|XP_002044575.1| GM20179 [Drosophila sechellia]
 gi|194132206|gb|EDW53828.1| GM20179 [Drosophila sechellia]
          Length = 1214

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 145/451 (32%), Positives = 242/451 (53%), Gaps = 24/451 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 503 WAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRH 562

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 +E G   +     +I+ PTREL  Q+  +  K+ K+  L    + GG     Q 
Sbjct: 563 ILDQPSMEDGDGAI----AIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQI 618

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 619 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDN 678

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQYSKK 231
           V   RQT++FSAT   +++ ++   L+ P  + V   S   + +E   V     A++ K 
Sbjct: 679 VRPDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKDVEQNVVILNDDAKFFK- 737

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +F
Sbjct: 738 ---LLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDF 794

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G ++L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  
Sbjct: 795 KSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITP 854

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           E  ++   I + ++     +  +L +L    + +  A+            K   FD ++ 
Sbjct: 855 EQSRYAGDIIRAMDLSGTLIPAELQTLWMEYKALQEAEGKTVHTGGGFSGKGFKFDEQEF 914

Query: 412 NYSS-----QKSHIPLKESEKISKLQQDIQE 437
           N +      QK+ + L +S+    ++QDI +
Sbjct: 915 NAAKESKKLQKAALGLADSDDEEDIEQDIDQ 945


>gi|194894625|ref|XP_001978097.1| GG17877 [Drosophila erecta]
 gi|190649746|gb|EDV47024.1| GG17877 [Drosophila erecta]
          Length = 1222

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 131/365 (35%), Positives = 209/365 (57%), Gaps = 19/365 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 511 WAQCGVSKKEMDVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRH 570

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G   +     +I+ PTREL  Q+  +  K+ K+  L    + GG     Q 
Sbjct: 571 ILDQPSLEDGDGAI----AIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQI 626

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 627 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDN 686

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA--TYAQYSKK 231
           V   RQT++FSAT   +++ ++   L+ P  + V   S   + +E   V     A++ K 
Sbjct: 687 VRPDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKDVEQNVVILNDDAKFFKL 746

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL  + Q   ++   I+F ++++N   L   L K  +   ++HG IDQ  R   + +F
Sbjct: 747 LELLG-IYQEAGSI---IVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDF 802

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G ++L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  
Sbjct: 803 KSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITP 862

Query: 352 EDIKH 356
           E  ++
Sbjct: 863 EQSRY 867


>gi|187608185|ref|NP_001119895.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Danio rerio]
 gi|169154730|emb|CAQ14635.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Danio rerio]
          Length = 709

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 150/433 (34%), Positives = 234/433 (54%), Gaps = 37/433 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ +   ++  +  + Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 225 FHDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKTKRDLMACAQTGSGKTAAFLLPVLSQ 284

Query: 63  L------------------EKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT 102
           +                  E G+   R + P +L+L PTRELA Q+ D   K+     + 
Sbjct: 285 IYSEGPGEALQATKASTQQENGKYVRRKQYPISLVLAPTRELALQIYDEARKFAYRSRVR 344

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
             ++ GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMG
Sbjct: 345 PCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMG 404

Query: 163 FIPYIQNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
           F P I+ I    ++ P  +RQT++FSAT   E+Q ++ +FL+    + V    ST+E I 
Sbjct: 405 FEPQIRRIVEQDTMPPKGSRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENIT 464

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
              V  + + + K + L  LL +       ++F   KK    L   L ++G++  +IHG+
Sbjct: 465 QKVV--WVEENDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGD 522

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
             QR R + L  F+ G   +MVA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR
Sbjct: 523 RSQRDREEALHQFRSGRCPIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 582

Query: 339 AGRHGKAFTLVAKEDIKHI-DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
            G  G A +    ++     D ++ L+E K +        +   LE +   +H H   N 
Sbjct: 583 VGNLGLATSFYNDKNSNITKDLLDILVEAKQE--------VPSWLENL-AYEHQHKSTNR 633

Query: 398 PIPQK-STGFDRR 409
             P++ S GF  R
Sbjct: 634 GRPKRFSGGFGAR 646


>gi|28901554|ref|NP_801209.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260363105|ref|ZP_05775974.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260880390|ref|ZP_05892745.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260894758|ref|ZP_05903254.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|260900107|ref|ZP_05908502.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|28810101|dbj|BAC63042.1| ATP-dependent RNA helicase, DEAD box family [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308089408|gb|EFO39103.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308092166|gb|EFO41861.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308109992|gb|EFO47532.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|308111933|gb|EFO49473.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
          Length = 412

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 213/369 (57%), Gaps = 11/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS +++ A L   + KPT IQ   IP +L   D+  +A TG+GKT ++ LP+L
Sbjct: 1   MPFSTLSLSSELIHA-LPKDFKKPTDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK R      + LIL PTRELA QV++   + G+  +L    L GG+  E Q + L 
Sbjct: 60  ---EKLRVNPEQ-KALILVPTRELAMQVSEAINQVGQALDLNTVCLCGGVDKEQQQQALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ T GR++D  N G L ++ +  LV+DEADR+LDMGF P +QNI       RQT
Sbjct: 116 TNPHILVATTGRLVDLANNG-LDLSKVHYLVLDEADRLLDMGFWPDVQNIAMQTSNQRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLL 239
            +FSAT +DEL+   +  +Q PK++  +  +ST + I E  ++      SK  AL++  L
Sbjct: 175 AMFSATFSDELKGKVKLLMQAPKQVAAHQENSTNQDIVETLYLVNKG--SKTKALIE--L 230

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q++    ++F   K+N   L   L K G S  A+HG+  Q  R + L+ FK G IQ++
Sbjct: 231 IKQNSWTQVLVFIGAKENADGLAKKLNKAGISTNALHGDKSQAEREEALAQFKSGQIQVL 290

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG  G A +LV   ++  ++A
Sbjct: 291 IATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVAMSLVCHGEMDALNA 350

Query: 360 IEKLIEKKV 368
           I  L ++ +
Sbjct: 351 IRHLTQRAL 359


>gi|297678503|ref|XP_002817109.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Pongo
           abelii]
          Length = 648

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 136/361 (37%), Positives = 211/361 (58%), Gaps = 7/361 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE---KG 66
           P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT  +++P    L+     
Sbjct: 251 PEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLDLQPSL 310

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           + +   P  L+L PTRELA QV     KY     L    + GG   + Q ++L +G D++
Sbjct: 311 KGQRNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIEELRKGVDII 369

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + NI  LV+DEAD+MLDMGF P I  I   V   RQT++ SAT
Sbjct: 370 IATPGRLNDLQMNNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSAT 429

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
               + ++++++L+ P  + V T    A  +++   + T  +  +K + +Q  LQ+  + 
Sbjct: 430 WPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEE--EKWSHMQTFLQNMSST 487

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F ++K    +L   L     S+ ++HG+ +QR R K L NFK G +++++A+DLA
Sbjct: 488 DKVIVFVSRKAVADHLSSDLILGNISIESLHGDREQRDREKALENFKTGKVRILIATDLA 547

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLD+ DV HV+NFD P   E Y+HRIGRTGRAGR G + T + + D +    +  ++E
Sbjct: 548 SRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELITILE 607

Query: 366 K 366
           +
Sbjct: 608 R 608


>gi|225579844|gb|ACN94118.1| unknown [Drosophila melanogaster]
          Length = 1224

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 145/451 (32%), Positives = 242/451 (53%), Gaps = 24/451 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 512 WAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRH 571

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 +E G   +     +I+ PTREL  Q+  +  K+ K+  L    + GG     Q 
Sbjct: 572 ILDQPSMEDGDGAI----AIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQI 627

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 628 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDN 687

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQYSKK 231
           V   RQT++FSAT   +++ ++   L+ P  + V   S   + +E   V     A++ K 
Sbjct: 688 VRPDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFK- 746

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +F
Sbjct: 747 ---LLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDF 803

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G ++L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  
Sbjct: 804 KSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITP 863

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           E  ++   I + ++     +  +L +L    + +  A+            K   FD ++ 
Sbjct: 864 EQSRYAGDIIRAMDLSGTLIPAELQALWTEYKALQEAEGKTVHTGGGFSGKGFKFDEQEF 923

Query: 412 NYSS-----QKSHIPLKESEKISKLQQDIQE 437
           N +      QK+ + L +S+    ++QDI +
Sbjct: 924 NAAKESKKLQKAALGLADSDDEEDIEQDIDQ 954


>gi|70994563|ref|XP_752059.1| ATP dependent RNA helicase (Dbp1) [Aspergillus fumigatus Af293]
 gi|74671260|sp|Q4WP13|DED1_ASPFU RecName: Full=ATP-dependent RNA helicase ded1
 gi|66849693|gb|EAL90021.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus fumigatus
           Af293]
          Length = 674

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 201/363 (55%), Gaps = 22/363 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 190 FTNPPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 249

Query: 63  ----------------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                              GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 250 AFQTGPSPVPAQASGQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVV 309

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 310 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQ 369

Query: 167 IQNITSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 370 IRRIVEGEDMPNVNERQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQK-- 427

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             Y +   K ++L  +L +  T    +IF   K+    L   L  Q F   AIHG+  QR
Sbjct: 428 VEYVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLLNQRFPATAIHGDRTQR 487

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 488 ERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 547

Query: 343 GKA 345
           G A
Sbjct: 548 GIA 550


>gi|195621064|gb|ACG32362.1| ATP-dependent RNA helicase DDX47 [Zea mays]
          Length = 455

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 135/368 (36%), Positives = 214/368 (58%), Gaps = 4/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+  ++V A    G+ +PT IQ + IP  LQ  D+  +AQTG+GKT +F LP+L  
Sbjct: 26  FAELGICAELVEACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTGAFALPILQE 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   R   +     +L PTRELA Q+A+ FE  G    L  ++L+GG+    Q   + + 
Sbjct: 86  LLSNRQAEQSFFACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSIGKR 145

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++ TPGR+LDH    K   +  I+ LV+DEAD++L++ F   + +I S +P  R+T 
Sbjct: 146 PHIVVGTPGRLLDHLTETKGFSLKKIKYLVLDEADKLLNVEFEKSLDDILSEMPKDRRTF 205

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT ++ K+    L+NP ++EV++  ST ++++  F    A   K C LL  L + 
Sbjct: 206 LFSATMTKKVNKLQRACLRNPAKVEVSSKYSTVDSLKQEFYFVPAD-DKDCYLLHVLNER 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            ++M   +IF    ++   L   L   G    +I G + Q  R+  L+ FK     +++ 
Sbjct: 265 LESMI--MIFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKAKDCNILIC 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V  V N+D+P  +++Y+HR+GRT RAGR G A +LV + + +    IE
Sbjct: 323 TDVASRGLDIQGVDMVINYDIPINSKDYVHRVGRTARAGRSGYAVSLVNQYEAQWFVLIE 382

Query: 362 KLIEKKVD 369
           +L+ KK+D
Sbjct: 383 QLLGKKID 390


>gi|24642151|ref|NP_573020.2| CG6227 [Drosophila melanogaster]
 gi|7293060|gb|AAF48446.1| CG6227 [Drosophila melanogaster]
 gi|54650792|gb|AAV36975.1| LD41277p [Drosophila melanogaster]
 gi|220951960|gb|ACL88523.1| CG6227-PA [synthetic construct]
 gi|225579871|gb|ACN94142.1| unknown [Drosophila melanogaster]
 gi|225579880|gb|ACN94150.1| unknown [Drosophila melanogaster]
 gi|225579907|gb|ACN94174.1| unknown [Drosophila melanogaster]
 gi|225579925|gb|ACN94190.1| unknown [Drosophila melanogaster]
 gi|225579943|gb|ACN94206.1| unknown [Drosophila melanogaster]
 gi|225579970|gb|ACN94230.1| unknown [Drosophila melanogaster]
          Length = 1224

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 145/451 (32%), Positives = 242/451 (53%), Gaps = 24/451 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 512 WAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRH 571

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 +E G   +     +I+ PTREL  Q+  +  K+ K+  L    + GG     Q 
Sbjct: 572 ILDQPSMEDGDGAI----AIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQI 627

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 628 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDN 687

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQYSKK 231
           V   RQT++FSAT   +++ ++   L+ P  + V   S   + +E   V     A++ K 
Sbjct: 688 VRPDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFK- 746

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +F
Sbjct: 747 ---LLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDF 803

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G ++L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  
Sbjct: 804 KSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITP 863

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           E  ++   I + ++     +  +L +L    + +  A+            K   FD ++ 
Sbjct: 864 EQSRYAGDIIRAMDLSGTLIPAELQALWTEYKALQEAEGKTVHTGGGFSGKGFKFDEQEF 923

Query: 412 NYSS-----QKSHIPLKESEKISKLQQDIQE 437
           N +      QK+ + L +S+    ++QDI +
Sbjct: 924 NAAKESKKLQKAALGLADSDDEEDIEQDIDQ 954


>gi|308050782|ref|YP_003914348.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307632972|gb|ADN77274.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 444

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 136/374 (36%), Positives = 202/374 (54%), Gaps = 12/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FAD  L P++  A+  +GY KPT IQ   +   L+  D+   A TGTGKTA+++LP L
Sbjct: 1   MSFADFDLDPRLEKALAKSGYTKPTTIQRAVLEAALEERDILASAPTGTGKTAAYLLPAL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY----NLTVALLIGGIPFEAQ 115
             +L+  R      R L+L PTRELA QV    E YG+       L++  ++GG  ++  
Sbjct: 61  QHLLDFPRREAGHARVLVLTPTRELAQQV----EAYGRKLLAGTQLSIGAIVGGKDYQHD 116

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L++  D+L+ TPGR++ +    K     +EI+VIDEADRMLDMGF+P +  I +   
Sbjct: 117 ADLLKQNMDILVATPGRLIMYLEDEKFDPRQVEIMVIDEADRMLDMGFMPVVDRIAAETR 176

Query: 176 FTRQTLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           + +QT+LFSAT+    L       L +P   +   P S  + I   +         K  L
Sbjct: 177 WRKQTMLFSATLEGAGLDNFVRELLNDPVHCDAKPPRSERKKITQYYYRA-DDMDHKFKL 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L++LL   +  +  +IF   +     L   L         + G + Q  R   L  F+EG
Sbjct: 236 LKRLLADPECTR-AMIFTKTRDRATELHAKLFAAKIRTAVLQGAMVQGKRDDALERFREG 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            +Q++VA+D+AARG+DI +V HV NFD+P  +E Y+HRIGRT RAG  G A  LV   D+
Sbjct: 295 RVQVLVATDVAARGIDIANVTHVINFDLPRTSEVYLHRIGRTARAGAKGMALNLVEAHDM 354

Query: 355 KHIDAIEKLIEKKV 368
             +D I++ I++ +
Sbjct: 355 PMLDRIQRYIDEPI 368


>gi|68536703|ref|YP_251408.1| putative ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
 gi|68264302|emb|CAI37790.1| putative ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
          Length = 453

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 135/379 (35%), Positives = 206/379 (54%), Gaps = 22/379 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+ LG++ ++  A+  A       IQ  T+P+ L+  DV G A+TG GKT  F +P+L  
Sbjct: 19  FSSLGVAAEITEALATANITHAFAIQEYTLPIALKGSDVIGQARTGMGKTLGFGIPVLDR 78

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNF------------------EKYGKNYNL 101
           + +          PR LI+ PTREL  QV D+                    K  K   L
Sbjct: 79  VFDDATVTAPDGTPRALIVVPTRELCLQVTDDLTLAARNLRVPVETEGASQRKKSKTRAL 138

Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
            V  + GG+ F+ Q   L RG DV++ TPGR+LD   +G L +N +EI+V+DEAD MLD 
Sbjct: 139 QVHAVYGGVSFDKQTTALARGVDVVVGTPGRLLDLAQQGYLQLNTVEIVVLDEADEMLDQ 198

Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
           GF+  +++I +     RQT+LFSATM   +  ++  F+++P  I+ +  ++ A       
Sbjct: 199 GFLDDVRSIITQTSPQRQTMLFSATMPGPIAALTRTFMRHPVLIQADNAATEATHESTKQ 258

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
           V   +    + + L ++LQS    +  I+F   K+    +   L K GF V A+HG++ Q
Sbjct: 259 VVFQSHKLDRLSALARILQSPGRGRC-IVFARTKRQAAGVAEELAKLGFRVGAVHGDMRQ 317

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
             R + L  F+   + +MVA+D+AARG+DI DV HV N+ VP+    Y+HRIGRTGRAG 
Sbjct: 318 NDREESLDEFRRNEVDVMVATDVAARGIDIEDVTHVINYQVPDDERTYVHRIGRTGRAGN 377

Query: 342 HGKAFTLVAKEDIKHIDAI 360
            G A +L+  +++   +AI
Sbjct: 378 TGTAVSLIGWDEVARWNAI 396


>gi|313241110|emb|CBY33407.1| unnamed protein product [Oikopleura dioica]
          Length = 847

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 135/368 (36%), Positives = 210/368 (57%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A  G S KV+  +    + KPTPIQ + +P ++   DV GIA+TG+GKT  FVLPML  
Sbjct: 350 WAQSGCSSKVLTLIKRMKFEKPTPIQAQCLPAIMSGRDVIGIAKTGSGKTLGFVLPMLRH 409

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +E  R   +   P  +I+ PTRELA Q+  +  K+  +       + GG     Q  +L+
Sbjct: 410 MEHQREVEKGEGPIAVIMTPTRELAIQITKDTRKFANHMRWRTVCVYGGTGISEQISELK 469

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA+++ICTPGR++D    N G++  +      V+DEADRM DMGF P + +I + V   
Sbjct: 470 RGAEIIICTPGRMIDMLAANNGRVTNLRRCTYCVLDEADRMFDMGFEPQVMHILNSVRPD 529

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ +LFSAT    ++ ++   L  P  I V   S   + ++   V    +  K   LL+ 
Sbjct: 530 RQLVLFSATFPRSMEALARRILTKPLEITVGGKSVVCDDVQQNVVVLNDE-DKFLKLLEL 588

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L + Q++  + I+F ++ +    L   + K G+   A+HG +DQ  R  ++++FK+G   
Sbjct: 589 LGRFQES-GSVIVFTHKHEVADALLKEVLKAGYPAQALHGGMDQYDRDSVINDFKKGVSN 647

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L++A+ +AARGLD+ ++  V NFD PN  E+Y+HR GRTGRAG  G A+T + +E+ K+ 
Sbjct: 648 LLIATSVAARGLDVKNLILVVNFDCPNHYEDYVHRCGRTGRAGNKGTAYTFLTEEEGKYA 707

Query: 358 DAIEKLIE 365
             I K +E
Sbjct: 708 GDIIKALE 715


>gi|313238875|emb|CBY13871.1| unnamed protein product [Oikopleura dioica]
          Length = 1036

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 135/368 (36%), Positives = 210/368 (57%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A  G S KV+  +    + KPTPIQ + +P ++   DV GIA+TG+GKT  FVLPML  
Sbjct: 374 WAQSGCSSKVLTLIKRMKFEKPTPIQAQCLPAIMSGRDVIGIAKTGSGKTLGFVLPMLRH 433

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +E  R   +   P  +I+ PTRELA Q+  +  K+  +       + GG     Q  +L+
Sbjct: 434 MEHQREVEKGEGPIAVIMTPTRELAIQITKDTRKFANHMRWRTVCVYGGTGISEQISELK 493

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA+++ICTPGR++D    N G++  +      V+DEADRM DMGF P + +I + V   
Sbjct: 494 RGAEIIICTPGRMIDMLAANNGRVTNLRRCTYCVLDEADRMFDMGFEPQVMHILNSVRPD 553

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ +LFSAT    ++ ++   L  P  I V   S   + ++   V    +  K   LL+ 
Sbjct: 554 RQLVLFSATFPRSMEALARRILTKPLEITVGGKSVVCDDVQQNVVVLNDE-DKFLKLLEL 612

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L + Q++  + I+F ++ +    L   + K G+   A+HG +DQ  R  ++++FK+G   
Sbjct: 613 LGRFQES-GSVIVFTHKHEVADALLKEVLKAGYPAQALHGGMDQYDRDSVINDFKKGVSN 671

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L++A+ +AARGLD+ ++  V NFD PN  E+Y+HR GRTGRAG  G A+T + +E+ K+ 
Sbjct: 672 LLIATSVAARGLDVKNLILVVNFDCPNHYEDYVHRCGRTGRAGNKGTAYTFLTEEEGKYA 731

Query: 358 DAIEKLIE 365
             I K +E
Sbjct: 732 GDIIKALE 739


>gi|229493632|ref|ZP_04387417.1| ATP-dependent RNA helicase [Rhodococcus erythropolis SK121]
 gi|229319593|gb|EEN85429.1| ATP-dependent RNA helicase [Rhodococcus erythropolis SK121]
          Length = 559

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 132/349 (37%), Positives = 195/349 (55%), Gaps = 7/349 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++GL  ++V A+       P+PIQ ++IP  L   +V G AQTG+GKT +F LPMLT 
Sbjct: 35  FAEIGLPEQLVAALARNSITVPSPIQAQSIPDALAGTNVLGRAQTGSGKTLAFGLPMLTR 94

Query: 63  LEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L +   R   + PR L+L PTRELA QV D+   Y     LTV   +GG PF  Q  +L 
Sbjct: 95  LSRHEDRPAAKRPRALVLVPTRELAFQVVDSLNSYAGALGLTVRPAVGGTPFAKQVDQLR 154

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVL+ TPGR+ DH  +G  +++++EI  +DEAD+M DMGF+P +++I    P   Q 
Sbjct: 155 RGVDVLVATPGRLGDHLRQGTCILDSVEITALDEADQMADMGFLPEVRSILGETPADGQR 214

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  E+Q +   FL N          ++ +T+EH +V    +  K   L +  + 
Sbjct: 215 LLFSATLDREVQSLVRQFLANHVTHSTEDGRASVDTMEH-YVLLVDRGQKDSVLAE--IG 271

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++D     I+F   K     +   L   G +  ++HG   Q  R ++L  FK G   ++V
Sbjct: 272 ARDGRT--IMFARTKLGCEGITDRLRAVGIAAESLHGGKAQNQRTRVLERFKNGRTPVLV 329

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           A+D+AARG+ +  +  V + D P   ++Y+HR GRT RAG  G    +V
Sbjct: 330 ATDVAARGIHVDGIDLVVHVDPPADHKDYLHRAGRTARAGEKGTVVAIV 378


>gi|195330800|ref|XP_002032091.1| GM23704 [Drosophila sechellia]
 gi|194121034|gb|EDW43077.1| GM23704 [Drosophila sechellia]
          Length = 699

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 130/352 (36%), Positives = 199/352 (56%), Gaps = 14/352 (3%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE----- 64
           P ++  +   G+ KP+PIQ +  P++LQ HD+ GIAQTGTGKT +F+LP +   E     
Sbjct: 283 PDMLGEITKMGFPKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTP 342

Query: 65  ---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +G A V     L+L PTRELA Q+     KY     +    + GG     Q   LER
Sbjct: 343 RGTRGGANV-----LVLAPTRELALQIEMEVNKYSFR-GMKAVCVYGGGDRNMQISDLER 396

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+++ICTPGR+ D      + ++ I  LV+DEADRMLDMGF P I+ +   +   RQT+
Sbjct: 397 GAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVILDIRPDRQTI 456

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT    ++++++++++NP ++ V +    A       +        K   +   +++
Sbjct: 457 MTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIKLMEDDMAKFNTITSFVKN 516

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             +    IIFC +K    +L   L   GF    IHGN DQ  R + +++ K G ++++VA
Sbjct: 517 MSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVA 576

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +D+A+RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + +   +ED
Sbjct: 577 TDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGRAGRQGTSISFFTRED 628


>gi|297303643|ref|XP_001095294.2| PREDICTED: ATP-dependent RNA helicase DDX3X [Macaca mulatta]
          Length = 738

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 220/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 279 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 338

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 339 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 398

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 399 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 458

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 459 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 517

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + S K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 518 -WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 576

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 577 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 636

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 637 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 668


>gi|269962799|ref|ZP_06177140.1| ATP-dependent RNA helicase, DEAD box family [Vibrio harveyi 1DA3]
 gi|269832489|gb|EEZ86607.1| ATP-dependent RNA helicase, DEAD box family [Vibrio harveyi 1DA3]
          Length = 447

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 135/388 (34%), Positives = 209/388 (53%), Gaps = 10/388 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + K T IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 5   LQFKDLGLDNRLLKNLKHYDFKKATDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 64

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L+      + PR +IL PTRELA QV           +   AL++GG  F  Q K L
Sbjct: 65  HKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLGGLSYDAALILGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGR+ DH     L ++ +E L++DEADRMLD+GF P ++ I       R 
Sbjct: 125 RRYPKFIVATPGRLADHLEHRSLFLDGLETLILDEADRMLDLGFAPELRRIHKAAKHRRR 184

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+   E+  ++   L  PKRI +   +   + I   F         K A+L++
Sbjct: 185 QTLMFSATLDHAEVNDIASEMLNAPKRIAIGVSNEEHKDITQKFYLC-DHLDHKEAILER 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+  +  +  IIF   + +   L + L ++     A+ GN++Q  R  I+S F+    +
Sbjct: 244 VLEEAE-YRQVIIFTATRDDTERLTNKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFK 302

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLDI  V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D    
Sbjct: 303 ILVTTDVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSF 362

Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNP 380
             +E  +++ +++     L G    L P
Sbjct: 363 KRVETYLQQDLNFSVFEDLKGKFKGLKP 390


>gi|24644483|ref|NP_731032.1| Rm62, isoform E [Drosophila melanogaster]
 gi|320542448|ref|NP_001189182.1| Rm62, isoform I [Drosophila melanogaster]
 gi|10727150|gb|AAF51927.2| Rm62, isoform E [Drosophila melanogaster]
 gi|257286223|gb|ACV53058.1| LP18603p [Drosophila melanogaster]
 gi|318068719|gb|ADV37273.1| Rm62, isoform I [Drosophila melanogaster]
          Length = 578

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 136/391 (34%), Positives = 214/391 (54%), Gaps = 16/391 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+++ L   V+  +   GY  PT IQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 141 DFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIV 200

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +  ++   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 201 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 260

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 261 QRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 320

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCAL 234
           TL++SAT   E+++++E+FL N  +I + +   +A     + ++ C    +++  K   L
Sbjct: 321 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVC--DEFSKEEKLKTL 378

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  +  + ++    IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G
Sbjct: 379 LSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSG 438

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + 
Sbjct: 439 KSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNA 498

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
           K   A+       VD L      +NP LE +
Sbjct: 499 KQAKAL-------VDVLREANQEINPALENL 522


>gi|225579808|gb|ACN94086.1| unknown [Drosophila melanogaster]
          Length = 1198

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 145/451 (32%), Positives = 242/451 (53%), Gaps = 24/451 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 512 WAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRH 571

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 +E G   +     +I+ PTREL  Q+  +  K+ K+  L    + GG     Q 
Sbjct: 572 ILDQPSMEDGDGAI----AIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQI 627

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 628 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDN 687

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQYSKK 231
           V   RQT++FSAT   +++ ++   L+ P  + V   S   + +E   V     A++ K 
Sbjct: 688 VRPDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFK- 746

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +F
Sbjct: 747 ---LLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDF 803

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G ++L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  
Sbjct: 804 KSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITP 863

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           E  ++   I + ++     +  +L +L    + +  A+            K   FD ++ 
Sbjct: 864 EQSRYAGDIIRAMDLSGTLIPAELQALWTEYKALQEAEGKTVHTGGGFSGKGFKFDEQEF 923

Query: 412 NYSS-----QKSHIPLKESEKISKLQQDIQE 437
           N +      QK+ + L +S+    ++QDI +
Sbjct: 924 NAAKESKKLQKAALGLADSDDEEDIEQDIDQ 954


>gi|225579799|gb|ACN94078.1| unknown [Drosophila melanogaster]
          Length = 1195

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 145/451 (32%), Positives = 242/451 (53%), Gaps = 24/451 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 512 WAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRH 571

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 +E G   +     +I+ PTREL  Q+  +  K+ K+  L    + GG     Q 
Sbjct: 572 ILDQPSMEDGDGAI----AIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQI 627

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 628 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDN 687

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQYSKK 231
           V   RQT++FSAT   +++ ++   L+ P  + V   S   + +E   V     A++ K 
Sbjct: 688 VRPDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFK- 746

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +F
Sbjct: 747 ---LLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDF 803

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G ++L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  
Sbjct: 804 KSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITP 863

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           E  ++   I + ++     +  +L +L    + +  A+            K   FD ++ 
Sbjct: 864 EQSRYAGDIIRAMDLSGTLIPAELQALWTEYKALQEAEGKTVHTGGGFSGKGFKFDEQEF 923

Query: 412 NYSS-----QKSHIPLKESEKISKLQQDIQE 437
           N +      QK+ + L +S+    ++QDI +
Sbjct: 924 NAAKESKKLQKAALGLADSDDEEDIEQDIDQ 954


>gi|159125027|gb|EDP50144.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus fumigatus
           A1163]
          Length = 674

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 201/363 (55%), Gaps = 22/363 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 190 FTNPPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 249

Query: 63  ----------------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                              GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 250 AFQTGPSPVPAQASGQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVV 309

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 310 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQ 369

Query: 167 IQNITSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 370 IRRIVEGEDMPNVNERQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQK-- 427

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             Y +   K ++L  +L +  T    +IF   K+    L   L  Q F   AIHG+  QR
Sbjct: 428 VEYVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLLNQRFPATAIHGDRTQR 487

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 488 ERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 547

Query: 343 GKA 345
           G A
Sbjct: 548 GIA 550


>gi|238788233|ref|ZP_04632028.1| ATP-dependent RNA helicase srmB [Yersinia frederiksenii ATCC 33641]
 gi|238723820|gb|EEQ15465.1| ATP-dependent RNA helicase srmB [Yersinia frederiksenii ATCC 33641]
          Length = 438

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 137/354 (38%), Positives = 202/354 (57%), Gaps = 4/354 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP L 
Sbjct: 5   NFSELDLDERLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K+  L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I +   + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQT 184

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+  E +++ +E  L  P  +E +      + I   +         K ALL  LL
Sbjct: 185 LLFSATLEGEAIREFAERILNEPVELEADPSRRERKKILQWYYRA-DNIEHKTALLVHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +  K+ IIF   ++ V  L   L + G +   + G + Q  R + +    +G + ++
Sbjct: 244 KQPEVQKS-IIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+A+RGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D
Sbjct: 303 VATDVASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHD 356


>gi|114563615|ref|YP_751128.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114334908|gb|ABI72290.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 451

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 203/369 (55%), Gaps = 5/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L  +++ ++   G   PT +Q + +P+ L   D+   ++TG+GKT +F+LP +
Sbjct: 1   MQFTDFSLDKRLLDSLKHLGISTPTDVQAQALPIALSGKDLMASSKTGSGKTLAFLLPAM 60

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   RA  +  PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRVISTRALSKKDPRVLILLPTRELAQQVYGQLRLLVANTQYKAISVLGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGRI DH  +  L +N +E+LV+DEADRMLD+GF P ++ I       R 
Sbjct: 121 ARDPHFIVATPGRIADHLQQRHLYLNGLELLVLDEADRMLDLGFAPQLKAINDAADHKRR 180

Query: 179 QTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+  + +  ++   L++P  + +    +  + IE   +        K A+LQ 
Sbjct: 181 QTLMFSATLDHNSIGDIATTLLKSPSHVSIGESYTEHKDIEQRIILV-DHLDHKQAVLQH 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L SQ+T K  I+F   + +   L   L  QGF+  A+ G++ Q +R +I+  F  G  Q
Sbjct: 240 IL-SQETHKQVIVFTATRSDTDRLATLLAAQGFATSALSGDLKQSARNQIMDQFARGQSQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A + V  +D    
Sbjct: 299 ILVTTDVASRGLDLINVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAVSFVGPKDWDSF 358

Query: 358 DAIEKLIEK 366
             ++  + K
Sbjct: 359 KKVQLFLRK 367


>gi|320637247|gb|EFX07073.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           G5101]
          Length = 457

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 132/351 (37%), Positives = 207/351 (58%), Gaps = 8/351 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           Y+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   A +   + L+L P
Sbjct: 23  YLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID---ASLFQTQALVLCP 79

Query: 81  TRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           TRELA QVA    +  +   N  +  L GG PF  Q   L+    +++ TPGR+LDH  +
Sbjct: 80  TRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQK 139

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
           G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT  + +  +S    
Sbjct: 140 GTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQ 199

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
           ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     + ++FCN KK+  
Sbjct: 200 RDPLAIEIDS-TDALPPIEQQFCETSSK--GKIPLLQRLL-SLHQPSSCVVFCNTKKDCQ 255

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V N
Sbjct: 256 AVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVN 315

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           F++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ K++W
Sbjct: 316 FELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNW 366


>gi|302831193|ref|XP_002947162.1| hypothetical protein VOLCADRAFT_103394 [Volvox carteri f.
           nagariensis]
 gi|300267569|gb|EFJ51752.1| hypothetical protein VOLCADRAFT_103394 [Volvox carteri f.
           nagariensis]
          Length = 481

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 130/335 (38%), Positives = 192/335 (57%), Gaps = 7/335 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL----EKGRARVRMPRTL 76
           +V P+PIQ +  P++L   D+ GIA TG+GKT  F LPML  +    + G    + P  +
Sbjct: 83  FVSPSPIQAQCWPIILAGRDLIGIAATGSGKTLGFGLPMLRHIAAQRDNGVVSGKGPFAI 142

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           ++ PTRELA Q+    E+ G   ++    + GG+P   Q   L+ G +V++ TPGR+ D 
Sbjct: 143 VMAPTRELALQINQVLEEAGSQCSVRTVCVYGGVPKGPQVAALKSGVEVVVGTPGRMEDL 202

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
            N G L +  +   V+DEADRMLD+GF P+I+ I  L    RQTL+FSAT    +QK++ 
Sbjct: 203 LNDGVLQLKKVTYAVLDEADRMLDLGFEPHIRAIMGLTRADRQTLMFSATWPAAVQKLAI 262

Query: 197 NFLQNPKRIEVNT---PSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
            FL +P ++ + +    +S + T     +   A+  +   LLQQ   ++      IIF  
Sbjct: 263 AFLSHPVKVTIGSQDLAASHSITQRVDVIDPNARDGRLLELLQQYHGAKGRKNRVIIFVL 322

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            KK    +   L ++G+   AIHG+I Q+ R   +  FK G + L++A+D+AARGLDIPD
Sbjct: 323 YKKEAPRVEQLLSRKGWKAVAIHGDISQQQRTDAVDKFKSGVVPLLIATDVAARGLDIPD 382

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           V  V N+  P   E+Y+HRIGRTGRAG+ G A T 
Sbjct: 383 VEVVINYSFPLTTEDYVHRIGRTGRAGKTGIAHTF 417


>gi|212540616|ref|XP_002150463.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224]
 gi|210067762|gb|EEA21854.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224]
          Length = 808

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 140/445 (31%), Positives = 230/445 (51%), Gaps = 52/445 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + GL  +++  +   GY  PTPIQ   IP+ LQ  D+ G+A TG+GKTASF+LP+L  
Sbjct: 370 WEESGLPRRLLDLIKQVGYADPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVY 429

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +       E    +   P  +IL PTRELA Q+    +K+ K  N  V  ++GG   E Q
Sbjct: 430 IAELPRLDEFEWRKNDGPYAIILAPTRELAQQIEIEAKKFSKPLNFNVVSIVGGHSLEEQ 489

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +P
Sbjct: 490 AYSLRDGAEIIIATPGRLVDCLERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALP 549

Query: 176 FT--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNT 209
            T                          RQT++++ATM   +++++  +L+ P  + +  
Sbjct: 550 VTNEKPDTEEAEDAQAMSQHVGGRDRRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 609

Query: 210 PSSTAETIEHC--FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
                +T+E    FVA   +  K+ A +    Q Q  +   I+F N K+N   +   +++
Sbjct: 610 VGQAVDTVEQRVEFVAGEDKRKKRLADILMSGQFQPPI---IVFVNIKRNCDAVAKDIKQ 666

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            GFS   +HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++    E
Sbjct: 667 MGFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIE 726

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
           +Y HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + 
Sbjct: 727 SYTHRIGRTGRAGKSGVAITFLGNEDTDVMYDLKQML------MKSSISRVPEELRKHEA 780

Query: 388 AQHNHARKNNPIPQKSTGFDRRKKN 412
           AQ          P +  GF ++K +
Sbjct: 781 AQSK--------PTRGGGFSKQKAD 797


>gi|160380607|sp|A6ZWD3|DBP1_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP1; AltName: Full=DEAD
           box protein 1; AltName: Full=Helicase CA1
 gi|151942679|gb|EDN61025.1| DEAD box protein [Saccharomyces cerevisiae YJM789]
          Length = 617

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 203/364 (55%), Gaps = 19/364 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF+   L   ++  +  A + KPTP+Q  +IP+V +  D+   AQTG+GKT  F+ P+ 
Sbjct: 154 LDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLF 213

Query: 61  TIL---------EKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
           T L         EK ++   R   P  L+L PTRELA Q+ +   K+     +   ++ G
Sbjct: 214 TELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYG 273

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G P   Q ++++RG D+L+ TPGR+ D   RGK+ + NI+ LV+DEADRMLDMGF P I+
Sbjct: 274 GAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIR 333

Query: 169 NITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           +I           RQTL+FSAT   ++Q ++ +FL N   + V    ST+E I    +  
Sbjct: 334 HIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYV 393

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                KK ALL  L      +   +IF   K+    L   L  Q F   AIHG+  Q  R
Sbjct: 394 -DDMDKKSALLDLLSAEHKGLT--LIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAER 450

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + LS FK     ++VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G 
Sbjct: 451 ERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGV 510

Query: 345 AFTL 348
           A + 
Sbjct: 511 ATSF 514


>gi|166711813|ref|ZP_02243020.1| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 458

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 143/383 (37%), Positives = 211/383 (55%), Gaps = 13/383 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ L LSP +   +   GY   TPIQ +++P +L+  DV   A TG+GKTA+F L +L 
Sbjct: 3   EFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILRGLDVIAQAPTGSGKTAAFGLGLLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+    R +    L+L PTRELA QV     K      N+ + +L GG+P   Q   LE
Sbjct: 63  KLDPALTRAQ---ALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 119

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I S     RQ
Sbjct: 120 AHDPHVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA--TYAQYSKKCALLQQ 237
           +LLFSAT    ++ ++   L++P  I V    +  E  +  F    TY Q +    LL+ 
Sbjct: 180 SLLFSATFPHIIRALAREILKDPIEITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLLRF 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                 T ++ ++FCN +K V  +  SL + GFS  A+HG+++QR R ++L  F   +  
Sbjct: 240 ------TPESSVVFCNTRKEVDEVAGSLHEFGFSALALHGDMEQRDRDEVLVRFVNRSCN 293

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+HG A +LVA  +    
Sbjct: 294 VLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARA 353

Query: 358 DAIEKLIEKKVDWLNGDLSSLNP 380
            A+E    + + W    L++  P
Sbjct: 354 QALEAEQGQPLKWSRAPLATARP 376


>gi|124481673|gb|AAI33163.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Danio rerio]
          Length = 709

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 150/433 (34%), Positives = 234/433 (54%), Gaps = 37/433 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ +   ++  +  + Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 225 FHDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKTKRDLMACAQTGSGKTAAFLLPVLSQ 284

Query: 63  L------------------EKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT 102
           +                  E G+   R + P +L+L PTRELA Q+ D   K+     + 
Sbjct: 285 IYSEGPGEALQATKASTQQENGKYVRRKQYPISLVLAPTRELALQIYDEARKFAYRSRVR 344

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
             ++ GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMG
Sbjct: 345 PCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMG 404

Query: 163 FIPYIQNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
           F P I+ I    ++ P  +RQT++FSAT   E+Q ++ +FL+    + V    ST+E I 
Sbjct: 405 FEPQIRRIVEQDTMPPKGSRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENIT 464

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
              V  + + + K + L  LL +       ++F   KK    L   L ++G++  +IHG+
Sbjct: 465 QKVV--WVEENDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGD 522

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
             QR R + L  F+ G   +MVA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR
Sbjct: 523 RSQRDREEALHQFRSGRCPIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 582

Query: 339 AGRHGKAFTLVAKEDIKHI-DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
            G  G A +    ++     D ++ L+E K +        +   LE +   +H H   N 
Sbjct: 583 VGNLGLATSFYNDKNSNITKDLLDILVEAKQE--------VPSWLENL-AYEHQHKSTNR 633

Query: 398 PIPQK-STGFDRR 409
             P++ S GF  R
Sbjct: 634 GRPKRFSGGFGAR 646


>gi|37676020|ref|NP_936416.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|326424408|ref|NP_763420.2| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|37200560|dbj|BAC96386.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|319999798|gb|AAO08410.2| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
          Length = 447

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 144/410 (35%), Positives = 213/410 (51%), Gaps = 12/410 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + K T IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 5   LQFKDLGLDNRLLKNLKHLDFQKATKIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 64

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   R PR +IL PTRELA QV           +    L++GG  F  Q K L
Sbjct: 65  HKSLKTKALSARDPRGVILAPTRELAKQVYGELRTMLGGLSYDATLIVGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGR+ DH     + +  +E LV+DEADRMLD+GF P ++ I +     R 
Sbjct: 125 ARYPKFIVATPGRLADHLEHKSVFLEGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRR 184

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+   E+  ++   L  PKRI +   +   + I   F         K ALL++
Sbjct: 185 QTLMFSATLDHAEVNDIASEMLDAPKRIAIGVSNEEHKDITQRFYLC-DHLDHKEALLER 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L S+   +  IIF   + +   L   L ++     A+ G+++Q  R  I+S F+    +
Sbjct: 244 VL-SEAEYRQVIIFTATRSDTDRLTEKLNEKKLKAIALSGSLNQNQRNTIMSQFERTVFK 302

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLDI  V HV NFD+P   E Y+HRIGRTGRAG  G A +LV  +D    
Sbjct: 303 ILVTTDVASRGLDISTVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAISLVGPKDWDSF 362

Query: 358 DAIEKLIEKKV-----DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
             +E  +++ +     D L G    + P   K D      A      PQK
Sbjct: 363 KRVEAYLQQDIAFSEFDDLKGKFKGIKP--RKPDFRAKKQATTKKARPQK 410


>gi|255534879|ref|YP_003095250.1| Cold-shock DEAD-box protein A [Flavobacteriaceae bacterium 3519-10]
 gi|255341075|gb|ACU07188.1| Cold-shock DEAD-box protein A [Flavobacteriaceae bacterium 3519-10]
          Length = 571

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 128/373 (34%), Positives = 218/373 (58%), Gaps = 13/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLV-LQRHDVCGIAQTGTGKTASFVLPMLT 61
           F +  LSP+++ A+ + G+  PT IQ +TIP +     D+  +AQTGTGKTA+F LP+L 
Sbjct: 4   FTETNLSPEILKAIGELGFESPTEIQKQTIPFISTDIRDLIALAQTGTGKTAAFSLPILD 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
           +++ G  +++    L+L PTREL  Q+  + + Y K  N +    + GG     Q + L 
Sbjct: 64  MIDDGSRKIQF---LVLCPTRELCLQITKDIKNYSKYMNNIKTTAVYGGSSITDQIRSLR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR++D  NR  L  + I+ LV+DEAD ML MGF   ++ I    P T+ T
Sbjct: 121 DKPQIIVGTPGRVIDLINRKALDFSEIQWLVLDEADEMLSMGFKDDLETILRETPETKHT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E++++S+++L  P RI V + +   + I+H F     ++ K+   L++L+ 
Sbjct: 181 YLFSATMNKEVERISKSYLTAPHRISVGSINEVKKNIKHEFYVVGYRHKKEA--LKRLID 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +    +  I+FC  +     +   L + G++  A+HG++ Q  R  ++  F+   I ++V
Sbjct: 239 ANPN-QYSILFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV ++ +P+  E ++HR GRTGRAG+ G + +L+  E+ + +  I
Sbjct: 298 ATDVAARGLDVDSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMSLIKPEESRKLKQI 357

Query: 361 E-----KLIEKKV 368
           +      ++EKKV
Sbjct: 358 KMSTKIDIVEKKV 370


>gi|145345795|ref|XP_001417385.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577612|gb|ABO95678.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 480

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 134/356 (37%), Positives = 200/356 (56%), Gaps = 13/356 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F DL L   V   +    +  PTP+Q   IP  L   D+   AQTG+GKTA+F  P++  
Sbjct: 52  FVDLDLGAAVNTNIKRCKFKNPTPVQKYAIPASLAGRDLMACAQTGSGKTAAFCFPIIAG 111

Query: 62  ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           IL++G       R   P  L+L PTRELA+Q+ +   K+     +   ++ GG P   Q 
Sbjct: 112 ILKRGLQGGHMNRKTYPLALVLSPTRELASQIHEESRKFAYQTGVASCVIYGGAPAVEQF 171

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + +ERG D+L+ TPGR++D  +R K+ ++ ++ L +DEADRMLDMGF P I+ I      
Sbjct: 172 RAMERGCDILVATPGRLIDLIDRAKISLSRVQYLALDEADRMLDMGFEPQIRQIVDERDM 231

Query: 177 ----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                RQT+LFSAT   E+Q+++ +FL +   + V    S+   I    V     Y +K 
Sbjct: 232 PRCGERQTMLFSATFPREIQRMASDFLDDYVFLTVGRVGSSHALITQS-VERVTSYHEKS 290

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            +L  L+++   +   ++F   K+    L   L + G    +IHG+  Q+ R   L +F+
Sbjct: 291 NMLLDLVEAVPGLT--LVFVETKRGADQLEDFLYQNGKPATSIHGDRTQQEREAALKSFR 348

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            G   ++VA+D+AARGLDIP V HV NFD+P+  ++Y HRIGRTGRAG+ G+A  L
Sbjct: 349 AGKTPILVATDVAARGLDIPHVTHVINFDLPSDIDDYTHRIGRTGRAGKKGRATAL 404


>gi|270011364|gb|EFA07812.1| hypothetical protein TcasGA2_TC005373 [Tribolium castaneum]
          Length = 1007

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 213/369 (57%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G+S K +  +   G+ KPTPIQ++ IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 350 WAQCGVSTKELNILKKLGFEKPTPIQVQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFRH 409

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL++     +  P  +I+ PTREL  Q+  + +K+ K+ NL    + GG     Q  +L+
Sbjct: 410 ILDQPPLEELDGPIAIIMTPTRELCMQIGKDIKKFTKSLNLHAVCVYGGTGISEQIAELK 469

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N GK+  +  +  +V+DEADRM DMGF P +  I   V   
Sbjct: 470 RGAEIIVCTPGRMIDMLAANGGKVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPD 529

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALLQ 236
           RQT++FSAT   +++ ++   LQ P  ++V   S   + +E H  +    Q   K   L 
Sbjct: 530 RQTVMFSATFPRQMEALARRILQKPIEVQVGGRSVVCKDVEQHVVILEEDQKFLKLLELL 589

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L     ++   I+F ++++N   L   L K  ++  ++HG IDQ  R   + +FK G +
Sbjct: 590 GLYHEHGSI---IVFVDKQENADILLKELMKAAYNCLSLHGGIDQFDRDSTIIDFKSGKV 646

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  E  ++
Sbjct: 647 KLLIATSVAARGLDVKHLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITPEQSRY 706

Query: 357 IDAIEKLIE 365
              I +  E
Sbjct: 707 AGDIIRAFE 715


>gi|196016401|ref|XP_002118053.1| hypothetical protein TRIADDRAFT_33552 [Trichoplax adhaerens]
 gi|190579356|gb|EDV19453.1| hypothetical protein TRIADDRAFT_33552 [Trichoplax adhaerens]
          Length = 524

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 144/372 (38%), Positives = 211/372 (56%), Gaps = 23/372 (6%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-----------EKGRAR 69
           Y  PTP+Q   I ++  + D+   AQTG+GKTA+F++P+L+++             G  R
Sbjct: 126 YNIPTPVQKYAISIITGKRDLMACAQTGSGKTAAFLIPILSLIFNGGPVVKPQSYYGSRR 185

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
            + P  LIL PTRELAAQ+ +  +K+         ++ GG  F  Q K L+RG  +L+ T
Sbjct: 186 KQFPLALILAPTRELAAQIYEEAKKFTYRAVARPCVVYGGADFGYQVKDLDRGCHLLVAT 245

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---SLVPF-TRQTLLFSA 185
           PGR++D   RG + ++  + LV+DEADRMLDMGF P I+ I    ++ P   RQT++FSA
Sbjct: 246 PGRLVDMLERGMIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPSGQRQTMMFSA 305

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           T   E+Q ++ +FL +   + V    ST+E I    V  + +   K A L +LL S +  
Sbjct: 306 TFPKEIQVLARDFLDDYIFLAVGRVGSTSENIIQKMV--WVEEDDKRAYLLELLNSTEPT 363

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              ++F   KK   +L   L + G+   AIHG+  QR R   L  F+ G   ++VA+ +A
Sbjct: 364 SLSLVFVETKKGADSLQEFLVRMGYYSTAIHGDRSQRDREDALRAFRAGVRPILVATAVA 423

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI--DAIEKL 363
           ARGLDIP+V HV NFD+P+  E Y+HRIGRTGR G  G A T    E  K++  D ++ L
Sbjct: 424 ARGLDIPNVAHVINFDLPSDIEEYVHRIGRTGRVGNVGTA-TSFFNEKNKNVAKDLVDLL 482

Query: 364 IEKKVD---WLN 372
           +E K     WL+
Sbjct: 483 LEAKQSVPRWLD 494


>gi|19528473|gb|AAL90351.1| RE28061p [Drosophila melanogaster]
          Length = 798

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 150/387 (38%), Positives = 217/387 (56%), Gaps = 23/387 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ L+  +   V  A Y KPTP+Q   IP+++   D+   AQTG+GKTA+F++P+L  
Sbjct: 297 FDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQ 356

Query: 62  ILEKGRA-----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           + E G             R + P  L+L PTRELA Q+ +  +K+     +  A+L GG 
Sbjct: 357 MYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGN 416

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L+RG  +++ TPGR+ D   RGK+ + NI  LV+DEADRMLDMGF P I+ I
Sbjct: 417 NTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRI 476

Query: 171 TSLV--PFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
              +  P T  RQTL+FSAT   ++Q+++ +FL N   + V    ST+E I    +  Y 
Sbjct: 477 VEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYTFLAVGRVGSTSENITQTILWVYE 536

Query: 227 --QYSKKCALLQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             + S    LL  +    +  K+   +IF   KK   +L   L +    V +IHG+  Q+
Sbjct: 537 PDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQK 596

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 597 EREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNL 656

Query: 343 GKAFTLVAKEDIKHI--DAIEKLIEKK 367
           G A +    E  ++I  D +E LIE K
Sbjct: 657 GVATSFF-NEKNRNICSDLLELLIETK 682


>gi|239813341|ref|YP_002942251.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
 gi|239799918|gb|ACS16985.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
          Length = 424

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 143/365 (39%), Positives = 204/365 (55%), Gaps = 6/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P +V A  ++GY  PT IQ   IP +LQ  DV G AQTG+GKTA+F LP+L
Sbjct: 1   MPFDSLGLAPALVQAAAESGYAAPTAIQAAAIPAILQGRDVRGSAQTGSGKTAAFSLPLL 60

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNK 117
             L    A+  R  R L+L PTRELAAQV +      ++    L +A+  GG+    Q  
Sbjct: 61  QRLAAEPAQAPRRVRALVLVPTRELAAQVGETLRSLAQHLPERLKIAIAFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GAD+++ TPGR+LD      L +  +  LV+DEADR+ D+GF   +  I +L+P  
Sbjct: 121 SLRGGADIMVATPGRLLDLVEHNALKLGAVSTLVLDEADRLFDLGFAEELGRILALLPAR 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT    +Q +++  L++P  I+V     T   I    +   A  +++  LL+ 
Sbjct: 181 RQNLLFSATFPPAIQALADGTLRDPAVIDVQGEPGTEPAIVQRVIEVDA--NRRTQLLRH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ ++     ++F   +     +   L K G      HG+I Q +R  IL+ FKE    
Sbjct: 239 LLK-ENEWDRVLVFVATQHAAQTVAEKLYKNGVYAVPFHGDIAQGTRTGILAQFKESRWD 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+DLAARG+DI  +  V N+D+P    +YIHRIGRTGRAG  G A + V+     H 
Sbjct: 298 VVIATDLAARGIDIAQLPVVINYDLPRSPTDYIHRIGRTGRAGESGLAISFVSAATEAHF 357

Query: 358 DAIEK 362
             IEK
Sbjct: 358 RLIEK 362


>gi|115468814|ref|NP_001058006.1| Os06g0602400 [Oryza sativa Japonica Group]
 gi|113596046|dbj|BAF19920.1| Os06g0602400 [Oryza sativa Japonica Group]
          Length = 484

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 142/365 (38%), Positives = 201/365 (55%), Gaps = 31/365 (8%)

Query: 36  LQRHDVCGIAQTGTGKTASFVLPMLTILEKG--------------RARVRMPRTLILEPT 81
           L   D+   AQTG+GKTA+F LP+++ L                 RA  + PR L+L PT
Sbjct: 1   LAGRDLMACAQTGSGKTAAFCLPVVSGLVAAGGSGIGHRERSSFNRAAAK-PRALVLAPT 59

Query: 82  RELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGK 141
           RELAAQ+ +  +K+     L V +  GG P   Q + LERGAD+L+ TPGR++D   R K
Sbjct: 60  RELAAQINEEAKKFSFQTGLRVVVAYGGTPMYNQLRDLERGADILVATPGRLVDMVERSK 119

Query: 142 LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSATMTDELQKVSEN 197
           + +  I+ LV+DEADRMLDMGF P I+ I   +       RQT+LFSAT   E+Q+++ +
Sbjct: 120 VSLEAIKYLVMDEADRMLDMGFEPQIRKIVERMNMPRKSVRQTMLFSATFPPEIQRLASD 179

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG-------II 250
           FL N   I V    S+ + I    V   +   K+  LL  L +    + N        ++
Sbjct: 180 FLSNYIFITVGRVGSSTDLIMQK-VELLSDGEKRGYLLDLLQRQSVGVANSKLQQPLTLV 238

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F   K+   +L + L  +GF   AIHG+  Q+ R   L +FK G   +MVA+D+A+RGLD
Sbjct: 239 FVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRGLD 298

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA-IEKLIEKKV- 368
           +P+V HV N+D+P   E+Y+HRIGRTGRAG+ G A     + D       +E + E K  
Sbjct: 299 VPNVAHVINYDLPKSIEDYVHRIGRTGRAGKAGSATAFFTESDHSLAKGLLELMTEAKQD 358

Query: 369 --DWL 371
             DWL
Sbjct: 359 VPDWL 363


>gi|157126319|ref|XP_001654592.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882564|gb|EAT46789.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 699

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 136/395 (34%), Positives = 215/395 (54%), Gaps = 3/395 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F   GL   ++      G+ KPT IQ + +P+ L   D+ GIAQTG+GKT +++ P L
Sbjct: 122 MEFEQGGLPDYILEEANKQGFSKPTAIQAQGMPIALSGRDMVGIAQTGSGKTLAYIAPAL 181

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +  +    R   P  L+L PTRELA Q+      +G+  N     + GG P   Q + 
Sbjct: 182 VHITHQDQLRRGDGPIALVLAPTRELAQQIQQVATDFGQRINANNTCVFGGAPKGPQIRD 241

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERGA+++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 242 LERGAEIVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIMGQIRPDR 301

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L++SAT   E++ ++E FL +  +I + + + +A       V     Y K   L++ L
Sbjct: 302 QVLMWSATWPKEVRNLAEEFLNDYIQINIGSLNLSANHNILQIVDVCEDYEKDQKLMKLL 361

Query: 239 LQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            + S +     IIF   K+ V ++  ++ + G+   +IHG+  Q+ R  +L+ F+ G   
Sbjct: 362 TEISAENETKTIIFVETKRRVDDITRNINRNGWRAVSIHGDKSQQERDYVLNAFRNGRQG 421

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    +    
Sbjct: 422 ILVATDVAARGLDVEDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTNSNANKA 481

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
             +  ++ +    +N  L+ +  P       +HN 
Sbjct: 482 GDLINVLREANQVINPKLAEMAKPGMNRHGQRHNR 516


>gi|224007100|ref|XP_002292510.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972152|gb|EED90485.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 365

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 138/361 (38%), Positives = 210/361 (58%), Gaps = 20/361 (5%)

Query: 29  IKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEKG--------RARVRMPRTLILE 79
           + +IP+     D+   AQTG+GKTA F+ P++ T+L  G        R R   P  L+L 
Sbjct: 1   MWSIPIASANRDLMACAQTGSGKTAGFLFPIIITMLRNGGTEPEGGVRGRRTYPECLVLA 60

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA+Q+ D  +K+     +   ++ GG     Q +++ERG D+L+ TPGR++D   R
Sbjct: 61  PTRELASQIQDEAQKFLYCTGIASVVVYGGADVRDQLRQIERGCDLLVATPGRLVDLIER 120

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--VPF--TRQTLLFSATMTDELQKVS 195
           G+L M N++ LV+DEADRMLDMGF P I+ I     +P    RQT++FSAT    +Q+++
Sbjct: 121 GRLSMENVKFLVLDEADRMLDMGFEPQIRRIVEQEGMPHGDDRQTMMFSATFPANIQRLA 180

Query: 196 ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
            +F+++   + V    S +E +    V    Q  K  AL++ LL  Q+ +   +IF   K
Sbjct: 181 GDFMRDYIFLTVGRVGSASENVVQS-VEYVEQNDKLDALMRFLLTIQEGLI--LIFVETK 237

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           +N   +   L ++GF  C+IHG+  QR R   L  FK G   ++VA+D+AARGLDIP+V 
Sbjct: 238 RNCDFVEDILCERGFPACSIHGDKSQREREDSLRAFKTGRCPVLVATDVAARGLDIPNVT 297

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD----WL 371
            V N+D+P   ++Y+HRIGRTGRAG  G A + V +++      + +L+E+       WL
Sbjct: 298 QVVNYDLPTNIDDYVHRIGRTGRAGNTGAALSFVNEKNSGVARELRELLEESGQEVPPWL 357

Query: 372 N 372
           N
Sbjct: 358 N 358


>gi|189240548|ref|XP_973126.2| PREDICTED: similar to DEAD box ATP-dependent RNA helicase
           [Tribolium castaneum]
          Length = 984

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 213/369 (57%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G+S K +  +   G+ KPTPIQ++ IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 327 WAQCGVSTKELNILKKLGFEKPTPIQVQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFRH 386

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL++     +  P  +I+ PTREL  Q+  + +K+ K+ NL    + GG     Q  +L+
Sbjct: 387 ILDQPPLEELDGPIAIIMTPTRELCMQIGKDIKKFTKSLNLHAVCVYGGTGISEQIAELK 446

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N GK+  +  +  +V+DEADRM DMGF P +  I   V   
Sbjct: 447 RGAEIIVCTPGRMIDMLAANGGKVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPD 506

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALLQ 236
           RQT++FSAT   +++ ++   LQ P  ++V   S   + +E H  +    Q   K   L 
Sbjct: 507 RQTVMFSATFPRQMEALARRILQKPIEVQVGGRSVVCKDVEQHVVILEEDQKFLKLLELL 566

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L     ++   I+F ++++N   L   L K  ++  ++HG IDQ  R   + +FK G +
Sbjct: 567 GLYHEHGSI---IVFVDKQENADILLKELMKAAYNCLSLHGGIDQFDRDSTIIDFKSGKV 623

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  E  ++
Sbjct: 624 KLLIATSVAARGLDVKHLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITPEQSRY 683

Query: 357 IDAIEKLIE 365
              I +  E
Sbjct: 684 AGDIIRAFE 692


>gi|225579790|gb|ACN94070.1| unknown [Drosophila melanogaster]
          Length = 1198

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 145/451 (32%), Positives = 242/451 (53%), Gaps = 24/451 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 512 WAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRH 571

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 +E G   +     +I+ PTREL  Q+  +  K+ K+  L    + GG     Q 
Sbjct: 572 ILDQPSMEDGDGAI----AIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQI 627

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 628 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDN 687

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQYSKK 231
           V   RQT++FSAT   +++ ++   L+ P  + V   S   + +E   V     A++ K 
Sbjct: 688 VRPDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFK- 746

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +F
Sbjct: 747 ---LLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDF 803

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G ++L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  
Sbjct: 804 KSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITP 863

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           E  ++   I + ++     +  +L +L    + +  A+            K   FD ++ 
Sbjct: 864 EQSRYAGDIIRAMDLSGTLIPAELQALWTEYKALQEAEGKTVHTGGGFSGKGFKFDEQEF 923

Query: 412 NYSS-----QKSHIPLKESEKISKLQQDIQE 437
           N +      QK+ + L +S+    ++QDI +
Sbjct: 924 NAAKESKKLQKAALGLADSDDEEDIEQDIDQ 954


>gi|152993738|ref|YP_001359459.1| ATP-independent RNA helicase DbpA [Sulfurovum sp. NBC37-1]
 gi|151425599|dbj|BAF73102.1| ATP-independent RNA helicase DbpA [Sulfurovum sp. NBC37-1]
          Length = 453

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 142/381 (37%), Positives = 214/381 (56%), Gaps = 26/381 (6%)

Query: 10  PKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
           P+ +   L+  G+   T IQ K+I  +L+  D+   ++TG+GKT +F +P +   +    
Sbjct: 11  PEALLGTLETLGFTTMTEIQQKSIGPILKGKDILAQSKTGSGKTLAFGIPAVMGTD---V 67

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLI 127
           +   P+T+++ PTRELA QVA    K      NL +  L GG+P  AQ   L +GA +LI
Sbjct: 68  KSNKPQTIVITPTRELAEQVAMELRKIAAYKANLKILTLYGGVPLRAQADSLAKGAHILI 127

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGRI DH  +G L + +I+ LV+DEADRMLDMGF   I  I S +P  +QTLLFSAT 
Sbjct: 128 GTPGRIQDHLAKGTLTLESIKTLVLDEADRMLDMGFYEEIIKIGSNMPKQKQTLLFSATF 187

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ--DTM 245
             +++ +++  L++P  I+V+T     +  E  +     +   K   L  L+ S   D++
Sbjct: 188 PPKIESLAKALLKDPLTIKVDTVQEAMKINELVY-----ETPDKFKTLNALIGSYKPDSL 242

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              +IFCN K  V++L   L+++G SV  IHG++DQR R + +  F   + ++MVA+D+A
Sbjct: 243 ---LIFCNTKAEVISLADRLQQRGHSVIDIHGDLDQRERNEAVILFSNRSKRIMVATDVA 299

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLDI D+  V N+D+P   E Y HRIGRTGRA   G A +L A  D            
Sbjct: 300 SRGLDIKDISLVINYDLPFDKEVYTHRIGRTGRADATGMAISLYAPND-----------S 348

Query: 366 KKVDWLNGDLSSLNPPLEKID 386
           +K  W+       +P   ++D
Sbjct: 349 EKCSWITSQAKQADPKDLRVD 369


>gi|304414180|ref|ZP_07395548.1| ATP-dependent RNA helicase [Candidatus Regiella insecticola LSR1]
 gi|304283394|gb|EFL91790.1| ATP-dependent RNA helicase [Candidatus Regiella insecticola LSR1]
          Length = 431

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 214/373 (57%), Gaps = 11/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P+V+  + + G+   TPIQ  T+P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPQVIEVLENEGFHNCTPIQALTLPITLTGQDVAGQAQTGTGKTLAFLASTFHH 70

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     E+G+  +  PR LI+ PTRELA Q+  +     ++  L + L  GG  ++ Q K
Sbjct: 71  LLSFPAEEGKM-INQPRALIMGPTRELALQIHADAVSLSQSSGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE+G D+LI T GRI+ +  +G + +  I+++V+DEADRM D+ FI  I+ +   +P  
Sbjct: 130 VLEKGVDILIGTTGRIIGYAKQGYINLAAIQVVVLDEADRMCDISFIKDIRWLFHSMPSA 189

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R  +LFSAT++  + +++   + N + +EV     T   I+      Y    +K  LL
Sbjct: 190 DKRLNMLFSATLSCRVHELAFELMHNGQYVEVEPLQKTGHRIQEELF--YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R +IL  F +G 
Sbjct: 248 QTLIE-EEWPDRCIIFSNTKHRCEDIWRHLAADGHRVGLLTGDVAQKKRQRILEEFTKGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   
Sbjct: 307 LDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGYSISLACEEYAL 366

Query: 356 HIDAIEKLIEKKV 368
           ++ AIE  I  ++
Sbjct: 367 NLPAIEGYIGHRI 379


>gi|291225666|ref|XP_002732826.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 23-like
           [Saccoglossus kowalevskii]
          Length = 768

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 134/382 (35%), Positives = 204/382 (53%), Gaps = 34/382 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + GL   ++  +   GY +PTPIQ + IP+ LQ  DV G+A+TG+GKTA+F++P+L  
Sbjct: 341 WTEAGLPDYIIDVIDSMGYKEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLIPLLVW 400

Query: 63  LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +       R       P  +IL PTRELA Q+      +GK   +    +IGGI  E Q 
Sbjct: 401 ISSLPKIARQEDVDQGPYAVILAPTRELAQQIEAETINFGKPLGIRTVSIIGGISREDQG 460

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            KL  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q+I   +P 
Sbjct: 461 FKLRMGCEIVIATPGRLIDVLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQHILEYLPV 520

Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           +                         RQT++F+ATM   +++++ N+L+ P  + + +  
Sbjct: 521 SNQKPDTDDAEDHDKLLANFASKHKYRQTVMFTATMPPPVERIARNYLRRPAVVHIGSVG 580

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
              + +E   V    Q  K+  L+  L    +     + F NQKK    L  SLEK G++
Sbjct: 581 KPVDRVEQV-VYMVKQQEKRQKLVHLLEAGFEP--PVMTFVNQKKGCDVLAKSLEKMGYN 637

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
              +HG   Q  R   L++ K G   ++V +D+A RG+DI DV  V N+D+    E+Y H
Sbjct: 638 ATTLHGGKSQEQREFALASLKNGDKDILVCTDVAGRGIDIKDVSMVINYDMAKNIEDYTH 697

Query: 332 RIGRTGRAGRHGKAFTLVAKED 353
           RIGRTGRAG+ G A +LV  +D
Sbjct: 698 RIGRTGRAGKTGLAVSLVTPDD 719


>gi|206579456|ref|YP_002237080.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae 342]
 gi|288934043|ref|YP_003438102.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
 gi|206568514|gb|ACI10290.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae 342]
 gi|288888772|gb|ADC57090.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
          Length = 443

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 135/352 (38%), Positives = 205/352 (58%), Gaps = 6/352 (1%)

Query: 18  DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTL 76
           D G+ +PT IQ   IP  L   D+ G A TGTGKTA+++LP L  +L+  R +   PR L
Sbjct: 21  DKGFTRPTAIQAAAIPPALDGRDILGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRIL 80

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           IL PTRELA QVAD+  +  K+ +L +A + GG+ +    +      D+++ T GR+L +
Sbjct: 81  ILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQY 140

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQKVS 195
                     +E L++DEADRMLDMGF   I+ I     + +QT+LFSAT+  D ++  +
Sbjct: 141 IKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQTMLFSATLEGDAIKDFA 200

Query: 196 ENFLQNPKRIEVN-TPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           E  L+ P  +EV+ TPS+      H +         K ALL  LL+  +  ++ I+F  +
Sbjct: 201 ERLLEEP--VEVSATPSTRERKKIHQWYYRADDIEHKTALLIHLLKQPEATRS-IVFVRK 257

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           ++ V  L   L + G + C + G + Q  R + +    +G + +++A+D+AARG+DIPDV
Sbjct: 258 RERVHELAAKLHEAGINTCWLEGEMVQIKRNEAIKRLTDGRVNVLIATDVAARGIDIPDV 317

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
            HVFNFD+P  A+ Y+HRIGRTGRAG+ G A +LV   D   +  I + +E+
Sbjct: 318 SHVFNFDMPRTADIYLHRIGRTGRAGKKGIAISLVEAHDHLLLGKIGRYVEE 369


>gi|24644479|ref|NP_524243.2| Rm62, isoform A [Drosophila melanogaster]
 gi|30923187|sp|P19109|DDX17_DROME RecName: Full=ATP-dependent RNA helicase p62
 gi|23175945|gb|AAG22213.2| Rm62, isoform A [Drosophila melanogaster]
 gi|41058179|gb|AAR99134.1| RE11923p [Drosophila melanogaster]
          Length = 719

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 136/391 (34%), Positives = 214/391 (54%), Gaps = 16/391 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+++ L   V+  +   GY  PT IQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 282 DFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIV 341

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +  ++   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 342 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 401

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 402 QRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 461

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCAL 234
           TL++SAT   E+++++E+FL N  +I + +   +A     + ++ C    +++  K   L
Sbjct: 462 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVC--DEFSKEEKLKTL 519

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  +  + ++    IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G
Sbjct: 520 LSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSG 579

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + 
Sbjct: 580 KSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNA 639

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
           K   A+       VD L      +NP LE +
Sbjct: 640 KQAKAL-------VDVLREANQEINPALENL 663


>gi|238762292|ref|ZP_04623264.1| ATP-independent RNA helicase dbpA [Yersinia kristensenii ATCC
           33638]
 gi|238699639|gb|EEP92384.1| ATP-independent RNA helicase dbpA [Yersinia kristensenii ATCC
           33638]
          Length = 460

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 215/369 (58%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L  
Sbjct: 6   FSSLTLPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLDK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           +  G     + + L+L PTRELA QV+    +  +   N+ +  L GG P   Q   L  
Sbjct: 66  IAVGEF---VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI +H  +  L++++++ILV+DEADRMLDMGF   I ++ +  P  RQTL
Sbjct: 123 APHIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S    + P  +EV+     A  IE  F  T  +  K+  LL   L S
Sbjct: 183 LFSATYPAGIEQISARVQRQPVNVEVDD-GDEAPAIEQVFFETTRE--KRLPLLISAL-S 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + ++FCN KK+  ++  +LE +G SV A+HG+++QR R ++L  F   + +++VA
Sbjct: 239 YYQPASCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V NF++    E ++HRIGRTGRAG  G A +L   +++    AIE
Sbjct: 299 TDVAARGLDIKDLELVVNFELAFDPEIHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHAIE 358

Query: 362 KLIEKKVDW 370
             ++ K+ W
Sbjct: 359 DYMQMKLKW 367


>gi|154345774|ref|XP_001568824.1| DEAD box RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134066166|emb|CAM43956.1| putative DEAD box RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 527

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 216/366 (59%), Gaps = 15/366 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL  ++  A  +AG+  PT IQ  TI +V +  D+ G+AQTG+GKT ++ LP++  
Sbjct: 55  FKDLGLCRELCMACAEAGWQHPTRIQASTITVVAEGRDLIGVAQTGSGKTGAYALPLVNW 114

Query: 63  LEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L      +  P+T     L++ PTRELA QV   F   G++  L VA L+GG     Q  
Sbjct: 115 L------LTQPKTPYLSVLVMVPTRELAQQVTAQFLLLGRSVGLRVATLVGGADMVEQAC 168

Query: 118 KLERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +L +   V++ TPGR+ DH +  K   +  +  LV+DEAD+MLDM +   I  I   +P 
Sbjct: 169 ELSKRPHVIVGTPGRVKDHLSNTKGFKLVKLHALVLDEADKMLDMDYEKEIDAILEQLPQ 228

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R+T+LFSAT++ ++ ++ +  L++P  ++V+  ++T +T++  ++  +A +++  + L 
Sbjct: 229 DRRTMLFSATLSTKVDRLQKASLRDPVLLQVHRKNTTVDTLKQYYI--FAPFAQMLSYLH 286

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L +++T  + +IFC     V  +  +L   G     + G +DQ +R   L+ FKEG +
Sbjct: 287 LFL-TKETGNHILIFCRSAALVHRITLALRTLGHRALPLMGRMDQSNRNIALTKFKEGKV 345

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++ +D+A RGLDIP    V NF +P+  E+YIHR+GRT RAG  GKA  L+++ DI  
Sbjct: 346 RMLICTDVAQRGLDIPHTDVVVNFSLPDHVEDYIHRVGRTARAGAEGKAVNLISQYDIVL 405

Query: 357 IDAIEK 362
           +  IE+
Sbjct: 406 LQKIEQ 411


>gi|324505328|gb|ADY42291.1| ATP-dependent RNA helicase DDX27 [Ascaris suum]
          Length = 688

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 137/361 (37%), Positives = 202/361 (55%), Gaps = 1/361 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  + LS  ++ AV   G+ KPTPIQ   IPL L   D+C  A TGTGKTA+F+LP+L
Sbjct: 145 VSFEYMNLSRPMLKAVGACGFTKPTPIQAACIPLALAGRDLCACAATGTGKTAAFMLPIL 204

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTRELA QV        +   + + L  GG+  +AQ   L 
Sbjct: 205 ERLLFKPKQKSVTRVLVLVPTRELAMQVFHVTRLLSQFSQVEICLCAGGLDIKAQEAALR 264

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            G D++I TPGR++DH  N     +++IE+LV+DEADRMLD  F   ++ +  L    RQ
Sbjct: 265 LGPDIVIATPGRLIDHLHNAPNFSLHDIEVLVLDEADRMLDEAFADQMKELIRLCSANRQ 324

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATMTD++++++   L+NP RI +N  + TA  +   F+     +  +   +   L
Sbjct: 325 TLLFSATMTDQIEQLAAVSLKNPVRIFINENTETALNLRQEFIRIRENHEHERESIVVAL 384

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   K+    L   L   G  V  +H  + Q  R++ LS FK   + L+
Sbjct: 385 VTRIFPDHTMLFVQTKRACQRLHIILGLLGIKVGQLHSGLSQTQRVETLSRFKNAELDLL 444

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++DLAARGLDI  V  V N  +P   + YIHR+GRT RAGR G++ +L    D K +  
Sbjct: 445 ISTDLAARGLDIEGVLTVINMQMPASLKQYIHRVGRTARAGRVGRSVSLFGAADRKLLKE 504

Query: 360 I 360
           I
Sbjct: 505 I 505


>gi|254566967|ref|XP_002490594.1| Nucleolar protein required for maturation of 18S rRNA [Pichia
           pastoris GS115]
 gi|238030390|emb|CAY68313.1| Nucleolar protein required for maturation of 18S rRNA [Pichia
           pastoris GS115]
 gi|328350981|emb|CCA37381.1| DEAD-box protein, putative RNA helicase similar to S. cerevisiae
           FAL1 (YDR021W) involved in rRNA processing [Pichia
           pastoris CBS 7435]
          Length = 396

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 211/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L   ++  +   G+  P+ IQ + I  +L   D    AQ+GTGKTA+F + ML +
Sbjct: 25  FEEMNLKEDLLRGIYGYGFEAPSAIQSRAIMQILTGKDTIAQAQSGTGKTATFSIGMLNV 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +   +  + ++L PTRELA Q+ +  +  G   N+     IGG       KKL++G
Sbjct: 85  VDTKK---KDTQAIVLSPTRELAVQINNVIQNLGDYMNIHTYACIGGTSVGEDLKKLQKG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L + N+++LV+DEAD ++  GF   I +I   +P + Q ++
Sbjct: 142 QHIVSGTPGRVCDMIKRRNLNVRNVKMLVLDEADELMTKGFQEQIYDIYKTLPPSTQVVV 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+T E+  ++  F+ +P +I V     + E I   ++    +   +   C L   L 
Sbjct: 202 VSATLTKEVLVMTNKFMNDPVKILVKRDEVSLEGIRQFYIQCEKEEWKFDTLCDLYDSL- 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN KK V  L   L K  F+V ++HG++ Q  R +I++ F+ G  +++
Sbjct: 261 ----TVTQAVIFCNTKKKVDWLTEHLRKANFTVVSMHGDMKQEDRDRIMNEFRLGNSRVL 316

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A  LV +EDI  + A
Sbjct: 317 ISTDVWARGIDVQQVSLVINYDIPFAKENYIHRIGRSGRFGRKGMAVNLVTEEDIGELHA 376

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IEK   KK++ +  + S L
Sbjct: 377 IEKYYSKKIEEMPANFSDL 395


>gi|195343855|ref|XP_002038506.1| GM10578 [Drosophila sechellia]
 gi|194133527|gb|EDW55043.1| GM10578 [Drosophila sechellia]
          Length = 724

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 136/391 (34%), Positives = 214/391 (54%), Gaps = 16/391 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+++ L   V+  +   GY  PT IQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 286 DFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIV 345

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +  ++   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 346 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 405

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 406 QRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 465

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCAL 234
           TL++SAT   E+++++E+FL N  +I + +   +A     + ++ C    +++  K   L
Sbjct: 466 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVC--DEFSKEEKLKTL 523

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  +  + ++    IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G
Sbjct: 524 LSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSG 583

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + 
Sbjct: 584 KSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNA 643

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
           K   A+       VD L      +NP LE +
Sbjct: 644 KQAKAL-------VDVLREANQEINPALENL 667


>gi|297193469|ref|ZP_06910867.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151793|gb|EDY62163.2| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 681

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 129/346 (37%), Positives = 188/346 (54%), Gaps = 5/346 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L  
Sbjct: 67  FSDLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLAT 126

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G    + PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LERG
Sbjct: 127 LAGGHTEKKKPRAIILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERG 186

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVL+ TPGR+ D  NRG   + N+ + V+DEAD+M D+GF+P +  +   +P   Q +L
Sbjct: 187 VDVLVATPGRLRDIINRGACSLENVRVAVLDEADQMSDLGFLPEVTELLDQIPAGGQRML 246

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E+  + + +L +P   EV++      T+ H  +       K  A +   + ++
Sbjct: 247 FSATMENEISTLVKRYLTDPVTHEVDSAQGNVTTMSHHVLVV---KPKDKAPVTAAIAAR 303

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L + G    A+HG + Q +R + L++FKEG +  +VA+
Sbjct: 304 KGRT--IIFVRTQLGADRIAEQLRESGVKADALHGGMTQGARTRTLADFKEGYVNALVAT 361

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           D+AARG+ +  +  V N D     ++Y+HR GRT RAG+ G   +L
Sbjct: 362 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGVVVSL 407


>gi|328706401|ref|XP_001950362.2| PREDICTED: putative ATP-dependent RNA helicase Pl10-like
           [Acyrthosiphon pisum]
          Length = 681

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 148/395 (37%), Positives = 216/395 (54%), Gaps = 20/395 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ L+  +   +    Y  PTP+Q   IP+++ R DV   AQTG+GKTA+F++P+L  
Sbjct: 197 FDDIKLTDIIRMNIALTRYDTPTPVQKYAIPIIVGRRDVMACAQTGSGKTAAFLVPILNQ 256

Query: 62  ILEKGRA----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
           I EKG A          R + P  LIL PTRELA Q+ D  +K+     +   ++ GG  
Sbjct: 257 IYEKGPAAYNVGPKLQSRRKYPLGLILAPTRELATQIYDEAKKFAYRSRVRPCVVYGGSH 316

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q + LE+G  +L+ TPGR++D   RGK+ ++    LV+DEADRMLDMGF   I+ I 
Sbjct: 317 VMDQIRDLEQGCHLLVATPGRLVDMLERGKIGLDFCRYLVLDEADRMLDMGFETQIRRIV 376

Query: 172 SL----VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
                  P  RQTL+FSAT   E+Q ++ +FL N   + +    ST+E I    V    +
Sbjct: 377 EKDSMPPPGDRQTLMFSATFPKEIQMLARDFLDNYIFLAIGRVGSTSENITQKIVWVEDR 436

Query: 228 YSKKCALLQQL----LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            +K+  LL  L    ++S+      ++F   KK   +L   L   G+ V +IHG+  QR 
Sbjct: 437 -NKRSYLLDLLNATPIRSKPAESLILVFVETKKGADSLEEFLYSNGYPVTSIHGDRTQRE 495

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L +F+ G   ++VA+ +AARGLDIP V HV N+D+P+  E Y+HRIGRTGR G  G
Sbjct: 496 REDALKSFRSGNTPVLVATAVAARGLDIPHVTHVINYDLPSDVEEYVHRIGRTGRMGNLG 555

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            A +    ++      + +LI +    L G L S+
Sbjct: 556 LATSFFNDKNRNLTRDLMELITESKQELPGWLESM 590


>gi|323693539|ref|ZP_08107743.1| hypothetical protein HMPREF9475_02606 [Clostridium symbiosum
           WAL-14673]
 gi|323502394|gb|EGB18252.1| hypothetical protein HMPREF9475_02606 [Clostridium symbiosum
           WAL-14673]
          Length = 422

 Score =  239 bits (610), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 146/427 (34%), Positives = 226/427 (52%), Gaps = 29/427 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GLS  ++ ++   GY +PT IQ + IP +L+  +V G A TG+GKTA+F +P   I
Sbjct: 9   FGAYGLSDDILESLRLLGYERPTEIQQQVIPAMLEGKNVVGRAPTGSGKTAAFAIP---I 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +K      +P+ LILEPTREL  QV +     G+   L V  + GG P + Q + L++ 
Sbjct: 66  CDKIIWEENLPQALILEPTRELTVQVQEEVFHIGRKKRLKVPAVFGGFPIDKQIRSLKQK 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + ++  TPGR++DH  RG L+++ +  LVIDEAD MLDMGFI  ++ I  L+    +  L
Sbjct: 126 SHIVTGTPGRVMDHIRRGSLILDKVTCLVIDEADLMLDMGFIDEVKQILDLLSPECRIAL 185

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  E+++ + + + +   I    P +    I      T  +   K  L   +L  +
Sbjct: 186 FSATLKPEIREFAGSHIHDMVMIFTEQPEAAENAITEELFETDNENKFKVFL--NVLYRE 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  +  IIFC  ++ V  L   L +       IHG ++Q+ R+K +  F+ G I+ ++A+
Sbjct: 244 NP-QCCIIFCGTREMVNVLFQKLRRHRIFCGMIHGELEQKERLKTIDAFRRGAIRYLIAT 302

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+D+ ++ HV N+D P   E Y+HRIGRTGR GR GKA +LV  ED + +   E+
Sbjct: 303 DVAARGIDLENITHVINYDFPTGRETYVHRIGRTGRNGRTGKAVSLVTAEDRRMLQMTEE 362

Query: 363 LI---------------EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
                            E+K  W +  L +   P ++        A  N  I + S G  
Sbjct: 363 YTGRSLPVLVCPESSGEEEKNFWKSQRLKTEAKPSKR--------AALNQDIIRLSIGGG 414

Query: 408 RRKKNYS 414
           R+ KN S
Sbjct: 415 RKSKNAS 421


>gi|300120104|emb|CBK19658.2| unnamed protein product [Blastocystis hominis]
          Length = 620

 Score =  239 bits (610), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 132/391 (33%), Positives = 220/391 (56%), Gaps = 43/391 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +++  + P ++ A+   G+ +PTPIQ + IP+ L+  D+ GIA+TG+GKT +FV+PML  
Sbjct: 181 WSEAAVHPAILRAIETLGFKEPTPIQRQAIPIELKGMDMIGIAKTGSGKTCAFVVPMLQY 240

Query: 63  LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYG-----------KNYNLTVAL 105
           + +     R+      P  +++ PTRELA Q+ D+ EK             ++  + +A 
Sbjct: 241 VIQAPIETRLQSKEQGPLAVVMAPTRELAKQIRDDAEKLAQFCVDERLAQSRSPRIRIAC 300

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           ++GG     Q+  L  G D+LI TPGR+LD   R  +++N    +V+DEADRM+D GF  
Sbjct: 301 MVGGESIVEQSSFLSNGCDILIGTPGRLLDCLERHFVVLNQTNYIVLDEADRMIDEGFEE 360

Query: 166 YI-----------------------QNITSLVPFTRQTLLFSATMTDELQKVSENFLQNP 202
            +                       + + SL    R T++FSATM  +++ +++ +++ P
Sbjct: 361 SVNAVMDAMGSTLKSEEEEDIEKAAEGVASLTNMYRTTIMFSATMPPKVEAIAKRYMRCP 420

Query: 203 KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLC 262
            ++ + TPS T + ++   +    + S K ++L +++++ +T    I+FCN+K+ V  + 
Sbjct: 421 VQVTIGTPSGTTK-VDIKQIINMVRESDKPSMLLKIIRNNET--PAIVFCNRKETVDTVT 477

Query: 263 HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322
            SL   G    A+ G I Q  R + L +F+ G   +MVA+++AARGLDI  V  V N+D+
Sbjct: 478 RSLHDSGHRTVALRGGIQQSRREEALEDFRRGVYDIMVATNVAARGLDIKGVKLVVNYDM 537

Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           P+  E YIHRIGRTGRAG  G A +LV ++D
Sbjct: 538 PDSLELYIHRIGRTGRAGATGLAVSLVTEKD 568


>gi|149196524|ref|ZP_01873578.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa
           HTCC2155]
 gi|149140204|gb|EDM28603.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa
           HTCC2155]
          Length = 412

 Score =  239 bits (610), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 211/368 (57%), Gaps = 11/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L     +  AV +  + + T IQ K IPL+ +  D+   +QTGTGKT +F  P++
Sbjct: 1   MSFEQLNFPDYLSRAVDNLNFSEATDIQAKAIPLIQEGKDLLAESQTGTGKTLAFSFPLI 60

Query: 61  ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL---TVALLIGGIPFEA 114
                L   + ++ +   L+L PTRELA QV   F  Y + ++L     A LIGG   + 
Sbjct: 61  ERINTLPPKKKKISI-LGLVLVPTRELALQVEKAFTNYAE-FSLRPIKTATLIGGENIDG 118

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q +KL  G DVLI TPGRI++  N G++ +  +E+L++DEAD+MLD+GF   ++ +   +
Sbjct: 119 QIRKLRMGLDVLIATPGRIIELINLGEVRLVELEMLILDEADKMLDLGFADELKELLEAL 178

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT+  ++Q+++E FL     + ++    T + IE   +   A   ++   
Sbjct: 179 PKKRQNLLFSATLPQKVQQLAEEFLNAAVELRISRDQITGDNIEQRVIEVDANLRRQV-- 236

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ+L + +   K+ IIF + K++  NL + L+K G      HG++ Q  R+K+L  F+  
Sbjct: 237 LQKLFKDEQ-WKHTIIFVSSKRSAFNLANKLKKAGIQAQDFHGDLTQDERIKVLKRFQNK 295

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +++A+D+AARG+DI  + HV N+D+P    +Y+HRIGRTGRAG+ G A + +     
Sbjct: 296 DFPILIATDIAARGIDISKLSHVINYDLPRSPMDYVHRIGRTGRAGQKGVAISFINPATE 355

Query: 355 KHIDAIEK 362
            H   I+K
Sbjct: 356 DHFKTIQK 363


>gi|325179957|emb|CCA14359.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 843

 Score =  239 bits (610), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 128/351 (36%), Positives = 205/351 (58%), Gaps = 3/351 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  LS  ++ A+      KPT IQ   IP+ L   D+C  AQTG+GKTA+F+LP+L  
Sbjct: 218 FADFKLSRPILRALNQMELTKPTLIQEYAIPMALLGKDICASAQTGSGKTAAFLLPILER 277

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    R+   R +I+ P RELA Q      K  +  ++T AL++GG+P +AQ  +L   
Sbjct: 278 LQLRTRRIAATRVIIICPVRELATQCQSVLIKLARFTDITSALVVGGLPLKAQELELRTC 337

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D+++CTPGR++DH  N   + ++++EILV+DEADR+L++GF   IQ I  + P  RQT+
Sbjct: 338 PDIIVCTPGRMIDHLRNSPSVHLDSLEILVLDEADRLLELGFTEEIQEIVRMCPRARQTM 397

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQLLQ 240
           LFSATMT ++ ++    ++ P RI  +     ++ +   FV     + + + A+L  L  
Sbjct: 398 LFSATMTSKIDQLIALSMKRPVRICADPLYDMSKHLVQEFVRIRPNREADRDAILLALCT 457

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T K  I+F   K +   +       G     +HGN+ Q+ R+  L  F++G + +++
Sbjct: 458 RAFTQKT-IVFMETKVHAHRMMILFGLSGIKAAELHGNLTQQERLDALEKFRQGAVDILL 516

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
            +D+AARG+D+  V  V N+++P     Y+HR+GRT RAG+ G+A TL ++
Sbjct: 517 CTDVAARGIDVKGVRAVINYEMPKDITTYVHRVGRTARAGQVGRAVTLTSE 567


>gi|255033889|ref|YP_003084510.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254946645|gb|ACT91345.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 481

 Score =  239 bits (610), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 146/413 (35%), Positives = 226/413 (54%), Gaps = 14/413 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +  L   V+ AV    Y + TPIQ + IP +L   D+   AQTGTGKTA++++P+L
Sbjct: 1   MNFNEFELHEDVLNAVDSMNYQQATPIQEQAIPHILSGKDLLACAQTGTGKTAAYLIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             +            LIL PTRELA Q+    +  G     T   + GG     ++ Q K
Sbjct: 61  DKV--AHEANEHTGALILVPTRELAVQIDQQIQGLGYFVGATSIAVYGGNKGPEWDQQKK 118

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +GAD++I TPGR++ H   G +   ++  LV+DEADRMLDMGF+  I  I S +P  
Sbjct: 119 ALTQGADIIIATPGRLIAHLQLGYVHFRDLRHLVLDEADRMLDMGFLGDILKIMSYLPNE 178

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL+FSATM  ++  +++  L+ P+ I +   S  A+ I+  F    A+  +K  LL  
Sbjct: 179 RQTLMFSATMPPKIGDLAKRILKEPEEIRLAV-SRPADRIDQQFY--LAKDEQKLPLLMH 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+  + +   ++F ++K NV  +  +L K G     I  + +Q  R  +L +FK     
Sbjct: 236 LLKGVENISM-VLFTSRKSNVEPIVRALRKLGLGAHGISSDSEQGEREIVLRDFKNRQFP 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ +RG+DI ++ HV N+DVP   E+Y+HRIGRT RA   G A T + ++D K++
Sbjct: 295 ILVATDVLSRGIDIDNLSHVVNYDVPRDPEDYVHRIGRTARAESKGTAMTFINEQDQKYV 354

Query: 358 DAIEKLIEKKVD--WLNGDLSSLNPPL---EKIDIAQHNHARKNNPIPQKSTG 405
             IE+L EK+++   L  +L     PL    ++     N   +  P P   +G
Sbjct: 355 LKIERLFEKELEKKSLTAELGLGEAPLFEPPRLRSGGRNKKNRKKPAPGAPSG 407


>gi|195432312|ref|XP_002064167.1| GK20023 [Drosophila willistoni]
 gi|194160252|gb|EDW75153.1| GK20023 [Drosophila willistoni]
          Length = 1234

 Score =  239 bits (610), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 132/385 (34%), Positives = 215/385 (55%), Gaps = 15/385 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 531 WAQCGVSKKEMDVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRH 590

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G   +     +I+ PTREL  Q+  +  ++ K+  L    + GG     Q 
Sbjct: 591 ILDQPQLEDGDGAI----AIIMAPTRELCMQIGKDIRRFSKSLGLCPVCVYGGTGISEQI 646

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 647 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDN 706

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           V   RQT++FSAT   +++ ++   L+ P  + V   S   + +E    A       K  
Sbjct: 707 VRPDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKDVEQH--AVILNDDAKFF 764

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +FK 
Sbjct: 765 KLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKS 824

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  E 
Sbjct: 825 GKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQ 884

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL 378
            ++   I + ++     +  +L++L
Sbjct: 885 SRYAGDIVRALDLSGTPVPAELTTL 909


>gi|169602116|ref|XP_001794480.1| hypothetical protein SNOG_03936 [Phaeosphaeria nodorum SN15]
 gi|160706086|gb|EAT89141.2| hypothetical protein SNOG_03936 [Phaeosphaeria nodorum SN15]
          Length = 727

 Score =  239 bits (610), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 135/418 (32%), Positives = 218/418 (52%), Gaps = 32/418 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + GL  KV+  V   GY +P+ +Q   IP+ LQ  D+ G+A TG+GKTASFVLP+L 
Sbjct: 309 NWQESGLPDKVLRLVEHVGYAEPSAVQRAAIPIALQCRDLIGVAVTGSGKTASFVLPLLV 368

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + +        R   P  ++L PTRELA Q+     K+        A+++GG   E Q 
Sbjct: 369 YISQLPPLGPSNRADGPYAIVLAPTRELAQQIEVETRKFAAPLGFNTAVIVGGHSIEEQA 428

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            ++  GA+++I TPGR++D   R  L+++    +++DEADRM+DMGF   +  I   +P 
Sbjct: 429 FQMRDGAEIVIATPGRLVDCIERRMLVLSQCTYVIMDEADRMIDMGFEEPVNKILDALPV 488

Query: 177 T--------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
           T                    RQT++++ATM   +++++  +L+ P  + +       ET
Sbjct: 489 TNEKPDSDAAEDPNAMKRGMYRQTMMYTATMPTAVERIARKYLRRPAIVTIGNVGEAVET 548

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
           +E        +  +K   LQ++L S +     I+F N K+N   +   ++  GFS   +H
Sbjct: 549 VEQRVEHIQGEEKRK-KRLQEILNSGEFTPPIIVFVNIKRNCDAIARDIKNMGFSSVTLH 607

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G+  Q  R   L+  +E  + ++VA+DLA RG+DI DV  V NF++    E+Y HRIGRT
Sbjct: 608 GSKTQEQREAALAQLREHRVDVLVATDLAGRGIDITDVSLVVNFNMATSIESYTHRIGRT 667

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           GRAG+ G A T    ED   +  +++++ K        +S +   L K + AQ    R
Sbjct: 668 GRAGKSGVAITFWGNEDADVLYDLKQMLTK------SQISKVPEDLRKHEAAQQKGGR 719


>gi|149908489|ref|ZP_01897151.1| ATP-dependent RNA helicase [Moritella sp. PE36]
 gi|149808323|gb|EDM68260.1| ATP-dependent RNA helicase [Moritella sp. PE36]
          Length = 432

 Score =  239 bits (610), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 144/423 (34%), Positives = 230/423 (54%), Gaps = 14/423 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+  GL+  V+  +  +G+   TPIQ  ++P  ++  DV G AQTGTGKT +F+  +   
Sbjct: 11  FSQFGLNADVLSGLEASGFEYCTPIQALSLPFAIKGKDVAGQAQTGTGKTIAFLAAIFHH 70

Query: 62  ILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L+K  A  R    PR +IL PTRELA Q+  +     K   L + L+ GG  ++ Q   
Sbjct: 71  LLKKPVAEDRPKNKPRAIILAPTRELAIQIHKDALPIAKATGLKMGLVYGGESYDIQRDN 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D++I T GRI+D   +  + ++ +E LV+DEADRMLD GFI  I+ +   +P  +
Sbjct: 131 LAKGVDIIIGTVGRIIDFEKQKAMDLSGVEALVLDEADRMLDQGFIKDIRYLMRKMPEPK 190

Query: 179 Q--TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           Q   LLFSAT T ++++++   +  P+ + V     T  +I       +     K ALLQ
Sbjct: 191 QRLNLLFSATFTWDIRELAYQHMNEPEEVTVPAEKVTGSSITQELF--HPSNDDKMALLQ 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ ++  +  I+F N K     +   L      V  + G+I Q+ R  IL  F +G +
Sbjct: 249 TLIE-EEWPERAIVFANTKHKCEEIWGHLAADKHRVGLLTGDIPQKKRNSILEQFTQGKL 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL IP V HVFN+D+P+   +Y+HRIGRTGRAG  G + +   ++ I +
Sbjct: 308 DILVATDVAARGLHIPAVSHVFNYDLPDNCGDYVHRIGRTGRAGAEGHSISFACEKYIYN 367

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           + AIE+ IE  +   + D S+L       D+ +  H ++  P   +S      +   + Q
Sbjct: 368 LPAIEEFIEGTIPVCHYDKSAL-----LTDLPRPIHTKRARPGNSRSMSDRNNRTRRTGQ 422

Query: 417 KSH 419
           + H
Sbjct: 423 RQH 425


>gi|24644485|ref|NP_731033.1| Rm62, isoform C [Drosophila melanogaster]
 gi|24644487|ref|NP_731034.1| Rm62, isoform F [Drosophila melanogaster]
 gi|45551833|ref|NP_731035.2| Rm62, isoform B [Drosophila melanogaster]
 gi|10727151|gb|AAG22212.1| Rm62, isoform F [Drosophila melanogaster]
 gi|23175947|gb|AAN14332.1| Rm62, isoform C [Drosophila melanogaster]
 gi|25012758|gb|AAN71471.1| RE68337p [Drosophila melanogaster]
 gi|45446365|gb|AAF51926.2| Rm62, isoform B [Drosophila melanogaster]
 gi|220950572|gb|ACL87829.1| Rm62-PB [synthetic construct]
          Length = 578

 Score =  239 bits (610), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 136/391 (34%), Positives = 214/391 (54%), Gaps = 16/391 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+++ L   V+  +   GY  PT IQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 141 DFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIV 200

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +  ++   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 201 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 260

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 261 QRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 320

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCAL 234
           TL++SAT   E+++++E+FL N  +I + +   +A     + ++ C    +++  K   L
Sbjct: 321 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVC--DEFSKEEKLKTL 378

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  +  + ++    IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G
Sbjct: 379 LSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSG 438

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + 
Sbjct: 439 KSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNA 498

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
           K   A+       VD L      +NP LE +
Sbjct: 499 KQAKAL-------VDVLREANQEINPALENL 522


>gi|86130260|ref|ZP_01048860.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
 gi|85818935|gb|EAQ40094.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
          Length = 638

 Score =  239 bits (610), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 128/371 (34%), Positives = 219/371 (59%), Gaps = 8/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIP-LVLQRHDVCGIAQTGTGKTASFVLPM 59
           M F  LGL+  ++ A+ D G+  P+ IQ + IP L+ +  D+  +AQTGTGKTA+F  P+
Sbjct: 1   MTFDQLGLNAPLLQAIADMGFETPSKIQEEAIPQLLAEDRDMVALAQTGTGKTAAFGFPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
           L  ++   A  +  + LI+ PTREL  Q+ +  + Y K+   + V  + GG   + Q ++
Sbjct: 61  LQNID---ASSKTTQGLIIAPTRELCLQITNEMKLYAKHIKGVRVVAVYGGSNIQEQARE 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           + RGA +++ TPGR+ D   R  + +  +   V+DEAD ML+MGF   I NI +  P  +
Sbjct: 118 ISRGAQIVVATPGRMQDMMRRRMVDITKLSYCVLDEADEMLNMGFYEDITNILADTPEDK 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            T LFSATM  E+ ++++ F+ +P  I V   +  A+ + H +   + +   +   L++L
Sbjct: 178 LTWLFSATMPREVARIAKEFMHDPLEITVGHKNEGAKNVSHEYYVVHTR--DRYQALKRL 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +   + + +IFC  K++   +   L + G++  A+HG++ Q  R  ++ +F+   IQ+
Sbjct: 236 SDANPDIFS-VIFCRTKRDTQKVAEQLIEDGYNAGALHGDLSQNQRDLVMKSFRNNQIQM 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+ HV N+ +P+  E Y HR GRTGRAG+ G +  +V K +++ I 
Sbjct: 295 LVATDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKTGTSMVIVTKSEMRKIK 354

Query: 359 AIEKLIEKKVD 369
            +EK++ KK D
Sbjct: 355 QLEKILAKKFD 365


>gi|312880591|ref|ZP_07740391.1| DEAD/DEAH box helicase domain protein [Aminomonas paucivorans DSM
           12260]
 gi|310783882|gb|EFQ24280.1| DEAD/DEAH box helicase domain protein [Aminomonas paucivorans DSM
           12260]
          Length = 561

 Score =  239 bits (610), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 205/370 (55%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPL-VLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F +  L P+++ A+   G+  P P+Q++ +    L   D+   A+TG+GKT +F LP+L 
Sbjct: 6   FDEFSLRPELLRALERKGFENPMPVQVRILEDDTLLDGDLIVQARTGSGKTLAFALPLLQ 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +E+G    R P+ L+L PTRELA Q A  F+  G    +  A L+GG+  + Q + L  
Sbjct: 66  RMERGE---RTPQVLVLSPTRELAQQTAREFQWVGGEMGIRPASLVGGMDMDRQIRSLRD 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR+LDH  RG L    I+ L++DE D MLD+GF   +++I S +    +T 
Sbjct: 123 GAAVVVGTPGRVLDHLRRGTLRPEGIQSLILDEGDHMLDLGFRDELESIMSALGTVERTW 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +++  ++  +L  P++I + T ++  E I     A      ++   L  +L  
Sbjct: 183 LFSATMPEDVVTLARKYLNAPRKISLVTDAARHEDIAQ--RAYVIPSRRRFEGLANVLLC 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   K  ++FC  +     L   L  +GF   A+HG++ QR R   L +F+ G + L+VA
Sbjct: 241 EHP-KRALLFCATRMETQELAERLGDEGFRAMALHGDMTQRERNNALESFRRGRVDLLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  + HV  + +P   E +IHR GRTGRAG  G+   L+   + +   ++ 
Sbjct: 300 TDVAARGLDIDGLSHVIQYGLPGCLETFIHRSGRTGRAGHEGRNVILLTAREARQFKSLV 359

Query: 362 KLIEKKVDWL 371
                 ++WL
Sbjct: 360 SHTALDIEWL 369


>gi|171687132|ref|XP_001908507.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943527|emb|CAP69180.1| unnamed protein product [Podospora anserina S mat+]
          Length = 489

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 129/364 (35%), Positives = 202/364 (55%), Gaps = 13/364 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 62  NFDEAGFPRYVMDEVKAQGFPAPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 121

Query: 62  ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                 +L  G      P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q
Sbjct: 122 HINAQPLLAPGDG----PIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQ 177

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L+RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   + 
Sbjct: 178 IRDLQRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIR 237

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL- 234
             RQTL++SAT   +++ ++ +FL +  ++ + +   +A       V   ++  K+  + 
Sbjct: 238 PDRQTLMWSATWPKDVRNLASDFLTDFIQVTIGSMDLSANHRITQIVEVVSESEKRDKMI 297

Query: 235 --LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L+++++ +      +IF   K+    +   L + G+   +IHG+  Q  R  +L  FK
Sbjct: 298 KELEKIMEDKTAENKCLIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFK 357

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +MVA+D+A+RG+D+ ++ HV N+D PN +E+YIHRIGRTGRAG  G A T    +
Sbjct: 358 TGKSPIMVATDVASRGIDVRNITHVINYDYPNNSEDYIHRIGRTGRAGAKGTAITYFTTD 417

Query: 353 DIKH 356
           + K 
Sbjct: 418 NAKQ 421


>gi|288574292|ref|ZP_06392649.1| DEAD/DEAH box helicase domain protein [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570033|gb|EFC91590.1| DEAD/DEAH box helicase domain protein [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 574

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 132/366 (36%), Positives = 204/366 (55%), Gaps = 8/366 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L  +++ A+   G+  P P+Q K +    +  D+   A+TG+GKT  F+LP+L  L +  
Sbjct: 15  LREELLNALAAKGFDSPMPVQEKVLESENRDGDLVVQARTGSGKTLGFLLPLLNELPRET 74

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
           A    PR L+L PTRELA Q+A   E  GK   +T A L+GG+  E Q K L RG+ +++
Sbjct: 75  A---TPRILVLSPTRELAQQIAGEAEWIGKYMGITTASLVGGMDMERQIKDLRRGSALVV 131

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR +DH  R  L  + I+ +V+DE D MLDMGF   I+ I + +P   +T LFSATM
Sbjct: 132 GTPGRTMDHIRRRTLKTDTIQTIVLDEGDTMLDMGFRDDIEAILNTLPDPHRTWLFSATM 191

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC-ALLQQLLQSQDTMK 246
            DE+  +++ +L +P  I +       E I H   A      K+   L+  LL     M 
Sbjct: 192 PDEVASLTKRYLDSPSWITLCHDEDQHEDITHR--AYLVPSGKRLEGLVNVLLWENPEM- 248

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
            G+IFC+ K   V     L+++GF+  A+HG++ Q  R  +++ F++G I  +VA+++AA
Sbjct: 249 -GLIFCHTKAGTVETMERLQEEGFAASALHGDMSQLERNSVMNAFRQGRIPYLVATNVAA 307

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLD+  V HV    +P+  E ++HR GRTGRAG+ G+   ++   +     A+ +    
Sbjct: 308 RGLDVQGVSHVIQIGLPDNLETFVHRSGRTGRAGQEGRNILVLTPREKGRFKAMLRASSM 367

Query: 367 KVDWLN 372
            + W N
Sbjct: 368 DLKWAN 373


>gi|282909394|ref|ZP_06317209.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282326664|gb|EFB56962.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WW2703/97]
          Length = 467

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 133/345 (38%), Positives = 201/345 (58%), Gaps = 15/345 (4%)

Query: 41  VCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN 100
           + G AQTGTGKT +F +P++  +  G+  V+   +LIL PTRELA QVA+   ++ +   
Sbjct: 3   ILGQAQTGTGKTGAFGIPLIEKV-VGKQGVQ---SLILAPTRELAMQVAEQLREFSRGQG 58

Query: 101 LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160
           + V  + GG+P E Q K L++G  +++ TPGR++DH NR  L  + I  L++DEAD M++
Sbjct: 59  VQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMN 118

Query: 161 MGFIPYIQNITSLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
           MGFI  ++ I   +P   RQT+LFSATM   +Q + + F+++PK I+      +   IE 
Sbjct: 119 MGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE 178

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
            +  T  +  +K       L      +  I+F   K+ V  L  +L  +G+    +HG+I
Sbjct: 179 FY--TIVKELEKFDTFTNFLDVHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDI 235

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q  R+++L  FK   I ++VA+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRA
Sbjct: 236 TQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRA 295

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
           G+ G A T V   ++ +I  IE    +K       +S+L PP  K
Sbjct: 296 GKEGIAVTFVNPIEMDYIRQIEDANGRK-------MSALRPPHRK 333


>gi|215486637|ref|YP_002329068.1| ATP-dependent RNA helicase DbpA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312966726|ref|ZP_07780944.1| ATP-independent RNA helicase dbpA [Escherichia coli 2362-75]
 gi|215264709|emb|CAS09083.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312288190|gb|EFR16092.1| ATP-independent RNA helicase dbpA [Escherichia coli 2362-75]
          Length = 457

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 134/364 (36%), Positives = 212/364 (58%), Gaps = 8/364 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
             +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  VSLFQTQGLVLCPTRELADQVAGELRRLARFLLNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDW 370
           K++W
Sbjct: 363 KLNW 366


>gi|8444|emb|CAA37037.1| unnamed protein product [Drosophila melanogaster]
          Length = 575

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 136/391 (34%), Positives = 214/391 (54%), Gaps = 16/391 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+++ L   V+  +   GY  PT IQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 138 DFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIV 197

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +  ++   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 198 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 257

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 258 QRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 317

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCAL 234
           TL++SAT   E+++++E+FL N  +I + +   +A     + ++ C    +++  K   L
Sbjct: 318 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVC--DEFSKEEKLKTL 375

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  +  + ++    IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G
Sbjct: 376 LSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSG 435

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + 
Sbjct: 436 KSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNA 495

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
           K   A+       VD L      +NP LE +
Sbjct: 496 KQAKAL-------VDVLREANQEINPALENL 519


>gi|182437685|ref|YP_001825404.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178466201|dbj|BAG20721.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 754

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 128/347 (36%), Positives = 188/347 (54%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   +V  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L  
Sbjct: 75  FGDLGLPEGIVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLAA 134

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  GR   + PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LERG
Sbjct: 135 LAGGRTEKKKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERG 194

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVL+ TPGR+ D  NRG   + ++++ V+DEAD+M D+GF+P +  +   VP   Q +L
Sbjct: 195 VDVLVATPGRLRDIINRGACSLEDVQVAVLDEADQMSDLGFLPEVTELLDQVPAGGQRML 254

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E+  + + +L NP   EV++      T+ H  +    +   K  +   +   +
Sbjct: 255 FSATMENEIGTLVKRYLSNPVTHEVDSAQGNVTTMSHHVLVVKPK--DKAPVTAAIAARK 312

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L + G    A+HG + Q +R ++L +FK+G +  +VA+
Sbjct: 313 GRT---IIFVRTQLGADRIAEQLIESGVKADALHGGMTQGARTRVLEDFKKGYVNALVAT 369

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+ +  +  V N D     ++Y+HR GRT RAG+ G   +L 
Sbjct: 370 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGVVVSLA 416


>gi|239942478|ref|ZP_04694415.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
           15998]
 gi|239988942|ref|ZP_04709606.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
           11379]
 gi|291445934|ref|ZP_06585324.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|291348881|gb|EFE75785.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
          Length = 742

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 128/347 (36%), Positives = 188/347 (54%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   +V  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L  
Sbjct: 61  FGDLGLPEGIVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLAA 120

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  GR   + PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LERG
Sbjct: 121 LAGGRTEKKKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERG 180

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVL+ TPGR+ D  NRG   + ++++ V+DEAD+M D+GF+P +  +   VP   Q +L
Sbjct: 181 VDVLVATPGRLRDIINRGACSLEDVQVAVLDEADQMSDLGFLPEVTELLDQVPAGGQRML 240

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E+  + + +L NP   EV++      T+ H  +    +   K  +   +   +
Sbjct: 241 FSATMENEIGTLVKRYLSNPVTHEVDSAQGNVTTMSHHVLVVKPK--DKAPVTAAIAARK 298

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L + G    A+HG + Q +R ++L +FK+G +  +VA+
Sbjct: 299 GRT---IIFVRTQLGADRIAEQLIESGVKADALHGGMTQGARTRVLEDFKKGYVNALVAT 355

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+ +  +  V N D     ++Y+HR GRT RAG+ G   +L 
Sbjct: 356 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGVVVSLA 402


>gi|238759674|ref|ZP_04620834.1| ATP-dependent RNA helicase srmB [Yersinia aldovae ATCC 35236]
 gi|238702102|gb|EEP94659.1| ATP-dependent RNA helicase srmB [Yersinia aldovae ATCC 35236]
          Length = 441

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 136/354 (38%), Positives = 203/354 (57%), Gaps = 4/354 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP L 
Sbjct: 5   NFSELDLDERLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K+  L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I +   + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQT 184

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+  E +++ +E  L  P  +E +      + I   +    +    K ALL  LL
Sbjct: 185 LLFSATLEGEAIREFAERILNEPVELEADPSRRERKKILQWYYRADS-IEHKTALLVHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +  K+ IIF   ++ V  L   L + G +   + G + Q  R + +    +G + ++
Sbjct: 244 KQPEVQKS-IIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+A+RGLDI D+ HVFNFD+P  ++ Y+HRIGRTGRAGR G A +LV   D
Sbjct: 303 VATDIASRGLDIDDISHVFNFDLPLTSDVYLHRIGRTGRAGRKGVAISLVEAHD 356


>gi|195060349|ref|XP_001995786.1| GH17577 [Drosophila grimshawi]
 gi|193896572|gb|EDV95438.1| GH17577 [Drosophila grimshawi]
          Length = 1302

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 130/363 (35%), Positives = 208/363 (57%), Gaps = 15/363 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 575 WAQCGVSKKEMDVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRH 634

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G   +     +I+ PTREL  Q+  +  ++ ++  L    + GG     Q 
Sbjct: 635 ILDQPTLEDGDGAI----AIIMAPTRELCMQIGKDIRRFSRSLGLRPVCVYGGTGISEQI 690

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 691 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDN 750

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           V   RQT++FSAT   +++ ++   L+ P  + V   S   + +E   V      +K   
Sbjct: 751 VRPDRQTVMFSATFPRQMEALARRILKKPVEVIVGGRSVVCKDVEQ-HVVILNDEAKFFK 809

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL+ L   Q+T  + I+F ++++N   L   L +  +   ++HG IDQ  R   + +FK 
Sbjct: 810 LLELLGIYQET-GSIIVFVDKQENADILLRDLMRASYPCMSLHGGIDQFDRDSTIIDFKS 868

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG  G AFT +  E 
Sbjct: 869 GKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGNKGCAFTFITPEQ 928

Query: 354 IKH 356
            ++
Sbjct: 929 ARY 931


>gi|66555009|ref|XP_395774.2| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Apis
           mellifera]
          Length = 566

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 202/353 (57%), Gaps = 11/353 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + G    V+  +   G+ +PT IQ +  P+ L   D+ GIA TG+GKT S++LP +  
Sbjct: 109 FEETGFPDYVLKEIKRQGFTEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPAIVH 168

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +  +    R   P  L+L PTRELA Q+    + +G +  +    L GG P  AQ + L+
Sbjct: 169 INSQPKLGRKDGPIALVLAPTRELAQQIQQVADDFGHSSGIRNTCLYGGAPKGAQARDLD 228

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G +++I TPGR+LD    G+  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 229 GGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT 288

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALL 235
           L++SAT   E++ ++E+FL++  +I V +    A     + I+ C    Y + +K   LL
Sbjct: 289 LMWSATWPKEVKNLAEDFLKDYAQINVGSLQLAANHNILQIIDVC--QDYEKENKLSTLL 346

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++++   +     I+F   K+ V  +   +++ G+    IHG+  Q+ R  +L +F+ G 
Sbjct: 347 KEIMAESENKT--IVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWVLQDFRSGK 404

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             ++VA+D+AARGLD+ DV  V NFD P+ +E+Y+HRIGRTGR  + G A+T 
Sbjct: 405 APILVATDVAARGLDVEDVKFVINFDYPSCSEDYVHRIGRTGRRQKTGTAYTF 457


>gi|24644481|ref|NP_731031.1| Rm62, isoform D [Drosophila melanogaster]
 gi|281361218|ref|NP_001163528.1| Rm62, isoform H [Drosophila melanogaster]
 gi|23175946|gb|AAN14331.1| Rm62, isoform D [Drosophila melanogaster]
 gi|51092049|gb|AAT94438.1| RE56857p [Drosophila melanogaster]
 gi|272476832|gb|ACZ94826.1| Rm62, isoform H [Drosophila melanogaster]
          Length = 575

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 136/391 (34%), Positives = 214/391 (54%), Gaps = 16/391 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+++ L   V+  +   GY  PT IQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 138 DFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIV 197

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +  ++   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 198 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 257

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 258 QRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 317

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCAL 234
           TL++SAT   E+++++E+FL N  +I + +   +A     + ++ C    +++  K   L
Sbjct: 318 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVC--DEFSKEEKLKTL 375

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  +  + ++    IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G
Sbjct: 376 LSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSG 435

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + 
Sbjct: 436 KSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNA 495

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
           K   A+       VD L      +NP LE +
Sbjct: 496 KQAKAL-------VDVLREANQEINPALENL 519


>gi|255089334|ref|XP_002506589.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
 gi|226521861|gb|ACO67847.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
          Length = 576

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 133/353 (37%), Positives = 196/353 (55%), Gaps = 10/353 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D     +++ AV  AGY  PTPIQ ++ P+ LQ +D+  +A+TG+GKT  ++ P +  
Sbjct: 127 FTDWEWPRELMDAVDRAGYKSPTPIQAQSWPIALQGYDLISVAKTGSGKTVGYLFPGIMH 186

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + +GR     PR +     +L PTRELA Q+ D   K+G+   +    L GG P   Q +
Sbjct: 187 I-RGRQGPSFPRPVGPTVTVLAPTRELATQIQDETAKFGRAIGMYSVCLYGGAPKGHQLR 245

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G  + I TPGR+ D    G + + +   +V+DEADRMLDMGF P I+ I    P  
Sbjct: 246 ELRHGPQIAIATPGRLNDFLESGAVNLGSSTYVVLDEADRMLDMGFEPQIRKILQRAPAQ 305

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           RQTL F+AT    + +V+   L NP ++ + +T +  A       V     + K+  L++
Sbjct: 306 RQTLFFTATWPRAVVRVATAILTNPIQVNIGDTDTLVANKDITQVVEVCGGFQKQQRLME 365

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L          I+FC  KK    +  S+   G     IHG+ +QR R  IL+ F+ G +
Sbjct: 366 VLRNPPTQPLKAIVFCGTKKMCDQIGRSMGGMG---AVIHGDKEQRERDWILNQFRSGRV 422

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            ++VA+D+AARGLDI +V  V NFD PN+ E+Y+HRIGRTGRAG  G A + +
Sbjct: 423 PVLVATDVAARGLDIKEVNMVVNFDFPNQIEDYVHRIGRTGRAGNKGWAHSFI 475


>gi|182627117|ref|ZP_02954835.1| putative membrane protein [Clostridium perfringens D str. JGS1721]
 gi|177907506|gb|EDT70164.1| putative membrane protein [Clostridium perfringens D str. JGS1721]
          Length = 324

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 126/324 (38%), Positives = 197/324 (60%), Gaps = 9/324 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ A+ D G+ +P+ IQ ++IP+ L+ HD+ G AQTGTGKTA+F   ++  
Sbjct: 6   FDDLGLKESLLKAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGCAIINN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +    + + P+ LIL PTRELA QV +   + GK+  L+V  + GG P + Q + L+ G
Sbjct: 66  ADFS-GKKKSPKALILAPTRELAIQVNEELVRLGKHEKLSVLPIYGGQPIDRQIRALKNG 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+LD   R  L +N+I  LV+DEAD ML+MGFI  ++ I   +   RQTLL
Sbjct: 125 VDIVVGTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDRQTLL 184

Query: 183 FSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           FSATM  +++K++ N++ ++ K I +   S T   IE  +  +    ++   C +L    
Sbjct: 185 FSATMPPQIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRDRFETLCRVL---- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     IIFC  KK V  +   ++ +G+ V  +HG++ Q  R++ L  FKEG++  +
Sbjct: 241 -DFDEPNAAIIFCKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEGSLDFL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVP 323
           VA+D+AARG+D+  V HV N+D+P
Sbjct: 300 VATDVAARGIDVESVTHVINYDLP 323


>gi|310791457|gb|EFQ26984.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 772

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 139/360 (38%), Positives = 203/360 (56%), Gaps = 4/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  ++  +   G+ KPTPIQ KTIP+ L   DV G A TG+GKT +FV+P+L  
Sbjct: 249 FQAMSLSRPLLRGLAAVGFSKPTPIQAKTIPIALMGKDVVGGAVTGSGKTGAFVVPILER 308

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R +IL PTRELA Q      K     ++   L +GG+  +AQ  +L   
Sbjct: 309 LLYRPKKVPTSRVVILTPTRELAIQCHAVATKLAAYTDIKFTLAVGGLSLKAQEVELRLR 368

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 369 PDVIIATPGRFIDHMRNSASFNVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTM 428

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATY-AQYSKKCALLQQLL 239
           LFSATMT  + K+    +  P R+ V++  + T  T+   FV     +  K+   L  + 
Sbjct: 429 LFSATMTSSVDKLVRLGMNKPARVMVDSQKNKTVGTLVQEFVRLRPGREEKRMGYLVHIC 488

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++  T +  I+F  QKK            G S   +HG+++Q  R+  + NF++G +  +
Sbjct: 489 KTMHTERV-IVFFRQKKEAHRARIIFGLLGMSCAELHGSMNQAQRIASVENFRDGKVNYL 547

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G A TL A+ D K + A
Sbjct: 548 LATDLASRGLDIKGVDTVINYEAPQNIEIYVHRVGRTARAGRTGIAITLAAEPDRKVVKA 607


>gi|300971643|ref|ZP_07171516.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|301046191|ref|ZP_07193365.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|300301848|gb|EFJ58233.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|300411129|gb|EFJ94667.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|315295345|gb|EFU54675.1| DEAD/DEAH box helicase [Escherichia coli MS 153-1]
          Length = 432

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 135/360 (37%), Positives = 211/360 (58%), Gaps = 8/360 (2%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84
           TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   A +   + L+L PTREL
Sbjct: 2   TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID---ASLFQTQALVLCPTREL 58

Query: 85  AAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           A QVA    +  +   N  +  L GG PF  Q   L+    +++ TPGR+LDH  +G + 
Sbjct: 59  ADQVAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVS 118

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT  + +  +S    ++P 
Sbjct: 119 LDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPL 178

Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
            IE+++ +     IE  F  T ++   K  LLQ+LL S     + ++FCN KK+  ++C 
Sbjct: 179 AIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPSSCVVFCNTKKDCQSVCD 234

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
           +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V NF++ 
Sbjct: 235 ALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELA 294

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
              E ++HRIGRT RAG  G A +  A E+ +  + I  +++ K++W     +S   PLE
Sbjct: 295 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTLPANSSIVPLE 354


>gi|268679106|ref|YP_003303537.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617137|gb|ACZ11502.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 407

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 136/361 (37%), Positives = 206/361 (57%), Gaps = 12/361 (3%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML----TIL 63
           LS  +  AV   G+  PTPIQ   IPLVL+  D+   A TG+GKTASFVLP+L       
Sbjct: 6   LSSPLQKAVHALGFTHPTPIQQSVIPLVLEHKDIVAKAHTGSGKTASFVLPILENWSAQT 65

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT--VALLIGGIPFEAQNKKLER 121
            +G+AR+R+   L+L PTREL  QVA+ F       ++   V  +IGG     Q  ++++
Sbjct: 66  HEGKARIRV---LVLTPTRELCVQVAEAFVALSSFLHVKPKVVSVIGGEKIGEQLLEIQK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ T GR+LD  N+ ++ ++ +   V+DEAD+MLD+GF   +  I   +P  RQ L
Sbjct: 123 GCDIVVATSGRLLDILNKKQMDLSRVSFFVLDEADKMLDLGFEQELGLILESLPQKRQNL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  +++Q+++         + +   + T + I    +    +   +  LL++LL+ 
Sbjct: 183 LFSATYPEKMQRIASRITPCAIEVSIEAEAPTLQRITQRVIEVNKE--NRAPLLRELLRE 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D     ++F   K+   N+     K  F   + HG++ Q  R   L +FKE  I+++ A
Sbjct: 241 ND-WDLVLVFMANKRAADNIAVKFRKHSFLAESFHGDLAQEDRTWTLQSFKERKIRVLFA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI DV  V NFD+P  +E+YIHRIGRTGRAG+ G A +L+  ED  H   IE
Sbjct: 300 TDIASRGLDIDDVSCVINFDLPRSSEDYIHRIGRTGRAGKEGLAISLIDHEDKAHFALIE 359

Query: 362 K 362
           K
Sbjct: 360 K 360


>gi|300795358|ref|NP_001177973.1| probable ATP-dependent RNA helicase DDX43 [Mus musculus]
 gi|149259807|ref|XP_001480973.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like isoform 1
           [Mus musculus]
          Length = 646

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 134/361 (37%), Positives = 212/361 (58%), Gaps = 7/361 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK---G 66
           P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT S+++P    L+     
Sbjct: 249 PEVMENIKRAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLSYLMPGFIHLDSQPLA 308

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTRELA QV     KY    +L    + GG   + Q + + +G D++
Sbjct: 309 REQRNGPGMLVLTPTRELALQVEAECSKYSYG-DLKSVCVYGGGDRDGQIQDVSKGVDII 367

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + ++  LV+DEAD+MLDMGF P I  I   V   RQT++ SAT
Sbjct: 368 IATPGRLNDLQMNNFVNLKSVTYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTIMTSAT 427

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
               ++++++++L+ P  + V T    A  T++   + T  +  +K   +Q  L++    
Sbjct: 428 WPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIITTEE--EKRTHIQTFLENMSPK 485

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F ++K    +L   L  +  SV ++HGN +Q  R K L NFK G +++++A+DLA
Sbjct: 486 DKVIVFVSRKAVADHLSSDLILRHISVESLHGNREQSDREKALENFKTGKVRILIATDLA 545

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLD+ D+ HV+N+D P   E Y+HR+GRTGRAGR G + TL+ + D +    +  ++E
Sbjct: 546 SRGLDVHDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGMSITLITRNDWRVATELINILE 605

Query: 366 K 366
           +
Sbjct: 606 R 606


>gi|156095474|ref|XP_001613772.1| pre-mRNA splicing factor RNA helicase PRP28 [Plasmodium vivax
           SaI-1]
 gi|148802646|gb|EDL44045.1| pre-mRNA splicing factor RNA helicase PRP28, putative [Plasmodium
           vivax]
          Length = 1006

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 135/380 (35%), Positives = 205/380 (53%), Gaps = 33/380 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  LS  ++ A+  A Y KPTPIQ++ IP+ L+  D+ GIA+TG+GKTA+FVLPML  
Sbjct: 583 WEESNLSSDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLAY 642

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +++            P  LI+ P+RELA Q+ D   K+    +     ++GG   EAQ  
Sbjct: 643 VKQLPPLTYETSQDGPYALIIAPSRELAIQIFDETNKFASYCSCRTVAVVGGRNAEAQAF 702

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L +G +++I TPGRI D   +   ++N    +++DEADRM+DMGF   +  I   +P T
Sbjct: 703 ELRKGVEIIIGTPGRIHDCLEKAYTVLNQCNYVILDEADRMMDMGFEDSVHFILDKIPTT 762

Query: 178 ------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
                                   R T +FSATM   ++++S  +L+ P  I +  P + 
Sbjct: 763 NLKSEDDALALQEEMMAKAGHRLYRLTQMFSATMPPAVERLSRKYLRAPAYISIGDPGAG 822

Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
             +IE      +    KK   LQ++L+  +     I+F NQKK    +  S+ K  F   
Sbjct: 823 KRSIEQKL--EFTTEGKKKQKLQEILEEYEAPI--IVFVNQKKVADIIAKSISKMKFRAV 878

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
           A+HG   Q  R + L++FK G   ++VA+D+A RG+D+  V  V NFD+P   E+Y HRI
Sbjct: 879 ALHGGKAQELREQTLNSFKNGDFDILVATDVAGRGIDVQGVKLVINFDMPKDIESYTHRI 938

Query: 334 GRTGRAGRHGKAFTLVAKED 353
           GRTGRAG  G A + V ++D
Sbjct: 939 GRTGRAGMKGMAISFVTEQD 958


>gi|71896415|ref|NP_001026109.1| probable ATP-dependent RNA helicase DDX49 [Gallus gallus]
 gi|53130312|emb|CAG31485.1| hypothetical protein RCJMB04_6o15 [Gallus gallus]
          Length = 402

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL+P +V      G  +PTP+Q   IP +LQ  D  G A+TG+GKTA+FVLP+L +
Sbjct: 4   FRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQV 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRK 120

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178
             V+I TPGR+ DH        +  ++ LV+DEADR+L+ G   FI  ++ I   VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFIADLEVILEAVPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+TD L ++    +  P   E  +   T + ++  ++      + K A L  L
Sbjct: 181 QTLLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYL--LVPEAVKDAYLVHL 238

Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q+ QD  ++   IIF    K    L   L K  F   A+H  + QR R   L+ FK   
Sbjct: 239 IQTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSI 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++A+D+AARGLDIP V  V N + P   + YIHR+GRT RAGR+G + T+V + DI 
Sbjct: 299 FKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIH 358

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ I+ K+
Sbjct: 359 LVHAIEEEIKLKL 371


>gi|327262701|ref|XP_003216162.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Anolis
           carolinensis]
          Length = 420

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 131/370 (35%), Positives = 204/370 (55%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 39  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 98

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 99  LD---IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 155

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 156 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 215

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 216 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 274

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 275 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 330

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 331 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 390

Query: 360 IEKLIEKKVD 369
           IE+    ++D
Sbjct: 391 IEQYYSTQID 400


>gi|167041390|gb|ABZ06143.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
           HF4000_005K23]
          Length = 427

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 208/368 (56%), Gaps = 9/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L L+  +  ++    +  PTPIQ + IP  L   D+ G AQTGTGKT  + +  + 
Sbjct: 3   NFSELNLNESLKHSIARMYFKIPTPIQAQAIPPALLGKDILGTAQTGTGKTLCYGIACIN 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            L   R        LI+ PTRELA QV D      +N  N+  A+LIGG   + Q ++L+
Sbjct: 63  KLLNDRG----SNALIICPTRELAVQVGDVLNGLIENTMNIKSAVLIGGESMQKQLRQLQ 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++I TPGR+ DH  R  L ++    LV+DE DRMLDMGFIP ++ I   VP   QT
Sbjct: 119 KRPRLIIGTPGRLNDHLKRKSLKLHQSYFLVLDETDRMLDMGFIPQVEQILKFVPKKHQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+   + K++E +L +P RI V + ++    I+   +   ++  K   L ++L +
Sbjct: 179 LLFSATLPQNILKITERYLNDPIRIRVGSTTTPISKIKQEVIQV-SEGDKYNKLQEELYK 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            + ++   ++F   K+N   +   L   G     +HGN+ Q  R + L  F+ G I++++
Sbjct: 238 RKGSI---LLFVKTKRNADKMADRLHDDGHRCDCMHGNLRQSKRQRTLIAFRSGKIRILI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +++LA+RGLD+P + HV N+ +P   E++IHRIGRT RAG  G A T +   D +  + I
Sbjct: 295 STELASRGLDVPSIQHVINYHLPQVPEDFIHRIGRTARAGAEGCALTFITPNDRQMWNGI 354

Query: 361 EKLIEKKV 368
           ++LI   V
Sbjct: 355 QRLINPNV 362


>gi|156083170|ref|XP_001609069.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
           containing protein [Babesia bovis T2Bo]
 gi|154796319|gb|EDO05501.1| DEAD/DEAH box helicase and  helicase conserved C-terminal domain
           containing protein [Babesia bovis]
          Length = 433

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 135/371 (36%), Positives = 208/371 (56%), Gaps = 10/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+ P++  A    G+  PTPIQ+  IP  L   DV G+A TG+GKT +F +P+L  
Sbjct: 45  FQSLGVCPELCKACQSMGWQAPTPIQMAAIPHALNGRDVIGLAVTGSGKTGAFTIPVLHH 104

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +   R+     ++L P+REL  Q+A+ F     +  L V ++IGG+    Q   L + 
Sbjct: 105 LLEDVQRIY---CVVLAPSRELCEQIAEQFRALSSSIALQVCVIIGGVDMVHQASALAKR 161

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             V++ +PGR+ DH    K   ++ ++ LVIDEADR+L   F   +  I   +P  RQT 
Sbjct: 162 PHVIVASPGRLADHVENTKGFSLSTVKKLVIDEADRLLSQDFDEELDKIIHAMPTERQTF 221

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT +L K+ +  L++P  ++V+   STAE ++  F+    +Y  K   L  LL  
Sbjct: 222 LFSATMTKKLSKLQKMALKDPISVQVDDKYSTAENLDQRFLLVPQKY--KYTYLAALLWY 279

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFS-VC--AIHGNIDQRSRMKILSNFKEGTIQL 298
             T +  I+FC            L+   F+ +C   +HG + Q  R + L  FK G++ +
Sbjct: 280 YAT-RTAIVFCKTCDGAQRCAAYLKGLKFTTICKVCLHGKMTQADRSRALQIFKTGSVNI 338

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++  RGLD+P V  V NFD+P  +++YIHR+GRT RAGR G A T+V + D++   
Sbjct: 339 LVATEVGGRGLDLPMVELVINFDIPECSKDYIHRVGRTARAGRSGLALTVVTQYDVELFQ 398

Query: 359 AIEKLIEKKVD 369
            IE  + KK++
Sbjct: 399 RIELALNKKLE 409


>gi|119500998|ref|XP_001267256.1| ATP dependent RNA helicase (Dbp1), putative [Neosartorya fischeri
           NRRL 181]
 gi|134034091|sp|A1CXK7|DED1_NEOFI RecName: Full=ATP-dependent RNA helicase ded1
 gi|119415421|gb|EAW25359.1| ATP dependent RNA helicase (Dbp1), putative [Neosartorya fischeri
           NRRL 181]
          Length = 676

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 201/363 (55%), Gaps = 22/363 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 192 FTNPPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 251

Query: 63  ----------------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                              GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 252 AFQTGPSAVPAQASGQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVV 311

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 312 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQ 371

Query: 167 IQNITSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 372 IRRIVEGEDMPNVNERQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQK-- 429

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             Y +   K ++L  +L +  T    +IF   K+    L   L  Q F   AIHG+  QR
Sbjct: 430 VEYVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLLNQRFPATAIHGDRTQR 489

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 490 ERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 549

Query: 343 GKA 345
           G A
Sbjct: 550 GIA 552


>gi|118597486|sp|Q0UWC8|PRP28_PHANO RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
          Length = 746

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 136/418 (32%), Positives = 218/418 (52%), Gaps = 32/418 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + GL  KV+  V   GY +P+ +Q   IP+ LQ  D+ G+A TG+GKTASFVLP+L 
Sbjct: 328 NWQESGLPDKVLRLVEHVGYAEPSAVQRAAIPIALQCRDLIGVAVTGSGKTASFVLPLLV 387

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + +        R   P  ++L PTRELA Q+     K+        A+++GG   E Q 
Sbjct: 388 YISQLPPLGPSNRADGPYAIVLAPTRELAQQIEVETRKFAAPLGFNTAVIVGGHSIEEQA 447

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            ++  GA+++I TPGR++D   R  L+++    +++DEADRM+DMGF   +  I   +P 
Sbjct: 448 FQMRDGAEIVIATPGRLVDCIERRMLVLSQCTYVIMDEADRMIDMGFEEPVNKILDALPV 507

Query: 177 T--------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
           T                    RQT++++ATM   +++++  +L+ P  + +       ET
Sbjct: 508 TNEKPDSDAAEDPNAMKRGMYRQTMMYTATMPTAVERIARKYLRRPAIVTIGNVGEAVET 567

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
           +E   V       K+   LQ++L S +     I+F N K+N   +   ++  GFS   +H
Sbjct: 568 VEQ-RVEHIQGEEKRKKRLQEILNSGEFTPPIIVFVNIKRNCDAIARDIKNMGFSSVTLH 626

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G+  Q  R   L+  +E  + ++VA+DLA RG+DI DV  V NF++    E+Y HRIGRT
Sbjct: 627 GSKTQEQREAALAQLREHRVDVLVATDLAGRGIDITDVSLVVNFNMATSIESYTHRIGRT 686

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           GRAG+ G A T    ED   +  +++++ K        +S +   L K + AQ    R
Sbjct: 687 GRAGKSGVAITFWGNEDADVLYDLKQMLTK------SQISKVPEDLRKHEAAQQKGGR 738


>gi|217077055|ref|YP_002334771.1| ATP-dependent RNA helicase [Thermosipho africanus TCF52B]
 gi|217036908|gb|ACJ75430.1| ATP-dependent RNA helicase [Thermosipho africanus TCF52B]
          Length = 516

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 129/370 (34%), Positives = 215/370 (58%), Gaps = 11/370 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           M+F D  LS K + A+ + G+  PTP+Q K IP +L++  ++   A+TGTGKTA+F +P+
Sbjct: 1   MNFEDFNLSEKTLRAINEKGFENPTPVQEKVIPTLLKKEKNLIVQAKTGTGKTAAFGIPL 60

Query: 60  LTILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + +LE KG  +      +IL PTRELA QV++      K   L +  + GG   + Q   
Sbjct: 61  IELLENKGYVQ-----AIILTPTRELALQVSEEINSL-KRKKLKILPIYGGQSIQRQIDH 114

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+++ TPGRILDH  RG + ++ ++  ++DEAD MLDMGFI  ++ I       +
Sbjct: 115 LRKGVDIVVGTPGRILDHLERGTIDLSKVDYFILDEADEMLDMGFIDDVEKILKSTSDDK 174

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             L+FSAT+   +  +++ +++N + I++     T    E  ++    + S K   L ++
Sbjct: 175 FFLMFSATIPKRIIDLAKKYIKNYEVIKIQDKQLTTNLTEQIYIE--LRESDKFEALCRI 232

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  ++    G++FC  K  V  +   L ++G+   A+HG+  Q  R ++L  F+E  + +
Sbjct: 233 IDMEEEF-YGMVFCRTKVEVDTVSSKLIERGYDAEALHGDFSQYQRERVLKKFREKKVNI 291

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV N+ +P   E+Y+HRIGRTGRAG+ G A T V   + + + 
Sbjct: 292 LVATDVAARGIDITGLTHVINYSIPLNPEHYVHRIGRTGRAGKEGIAITFVTPREYRQLF 351

Query: 359 AIEKLIEKKV 368
            I+K    K+
Sbjct: 352 RIKKFSNAKI 361


>gi|52545677|emb|CAH10627.2| hypothetical protein [Homo sapiens]
          Length = 652

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 138/383 (36%), Positives = 214/383 (55%), Gaps = 22/383 (5%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 100 PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 159

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 160 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQ 237
           +SAT   E+++++E+FL++  +I V     +A     + ++ C  +   +  K   L+++
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESE--KDHKLIQLMEE 333

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   
Sbjct: 334 IMAEKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAP 391

Query: 298 LMVASDLAAR--GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +++A+D+A+R  GLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K
Sbjct: 392 ILIATDVASRGLGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLK 451

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
               + K++E+    +N  L  L
Sbjct: 452 QARELIKVLEEANQAINPKLMQL 474


>gi|255078160|ref|XP_002502660.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
 gi|226517925|gb|ACO63918.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
          Length = 611

 Score =  239 bits (610), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 147/394 (37%), Positives = 207/394 (52%), Gaps = 38/394 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D     K+V A+L  GY  PTPIQ +  P+ ++  DV  IA+TG+GKT  F+LP L  
Sbjct: 158 FEDAPFPRKLVAALLKQGYESPTPIQAQAWPIAVKGKDVIAIAKTGSGKTCGFLLPALAK 217

Query: 62  ILEKG--------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
           I+++G              R    +P  ++L PTRELA Q+ D   K+       V  L 
Sbjct: 218 IVKQGATAAPDMEMVDGRFRPAAVVPHAIVLAPTRELAIQIGDECAKFCPAAGAKVVTLY 277

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFN-----RGKLLMNNIEILVIDEADRMLDMG 162
           GG     Q + L  GADVL+ TPGR+ D           +   N   +V+DEADRMLDMG
Sbjct: 278 GGASKGDQLRALRSGADVLVATPGRLHDFLAPPPGFSAPVSARNAHYVVLDEADRMLDMG 337

Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ----------NPKRIEVNTPSS 212
           F P I+ I  + P  RQTL+F+AT  D ++K+++ FLQ             R+  N   S
Sbjct: 338 FEPQIKKIIKMCPTARQTLMFTATWPDGVRKIADTFLQPDAALVRIGDGGDRLTAN--KS 395

Query: 213 TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF-S 271
             +TIE   V    +  +  A+L++ L        GI+FC  K+    +   ++  G  S
Sbjct: 396 ITQTIE--IVTEDQKLDRAIAVLKENLVDG---ARGIVFCGTKRRCDFIDRKMKAMGLRS 450

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
             AIHG+ DQ  R   L  F++G   L+VA+D+AARGLDIP V  V  +D P + E+Y+H
Sbjct: 451 AGAIHGDKDQAEREYSLDLFRKGKAPLLVATDVAARGLDIPGVTVVLVYDFPLQVEDYVH 510

Query: 332 RIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           RIGRTGRAG+ GKA     +ED      + +++E
Sbjct: 511 RIGRTGRAGKEGKAHCFFTEEDAGAARELVQILE 544


>gi|189189808|ref|XP_001931243.1| ATP-dependent RNA helicase DBP10 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187972849|gb|EDU40348.1| ATP-dependent RNA helicase DBP10 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 892

 Score =  239 bits (610), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 131/391 (33%), Positives = 212/391 (54%), Gaps = 41/391 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ K +PL+LQ  DV G+A+TG+GKTA+FV+PM+  
Sbjct: 79  FQAMGLNAALLKAIAQKGFKIPTPIQRKAVPLMLQGEDVVGMARTGSGKTAAFVIPMIQK 138

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+V   R +I+ P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 139 LKAHSAKV-GARGIIMSPSRELALQTLKVVKELGRGTDLRTILLVGGDSLEEQFSSMTTN 197

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L ++++  +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 198 PDIIIATPGRFLHLKVEMGLDLSSVRYIVFDEADRLFEMGFAAQLSEILHALPASRQTLL 257

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-------------------- 222
           FSAT+   L + +   LQ PK I ++  S  +  ++  +                     
Sbjct: 258 FSATLPKSLVEFARAGLQEPKLIRLDAESKISPDLKSAYFTIKSGDRDGALLHLLDNVIK 317

Query: 223 ---------------ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
                          A  A  SKK    +  ++     ++ IIF   K  V  L + L  
Sbjct: 318 VPVGETDASKKAKEDAEKASNSKKRKRSEGFVKDVPVAESTIIFAATKHRVEYLSNLLRN 377

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            G++V  ++GN+DQ +R + + +F+ G  +++V +D+AARG+D+P + HV N+D P++ +
Sbjct: 378 AGYAVSYVYGNLDQTARKEQIQDFRTGLTRILVVTDVAARGVDMPHINHVINYDFPSQPK 437

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
            ++HR+GRT RAGR G A++L      +H+D
Sbjct: 438 IFVHRVGRTARAGRKGWAYSLC-----RHVD 463


>gi|308473123|ref|XP_003098787.1| CRE-VBH-1 protein [Caenorhabditis remanei]
 gi|308268083|gb|EFP12036.1| CRE-VBH-1 protein [Caenorhabditis remanei]
          Length = 686

 Score =  239 bits (610), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 142/393 (36%), Positives = 216/393 (54%), Gaps = 27/393 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++ G  P V+  V  +GY KPTP+Q  +IP +L   D+   AQTG+GKTA+F+LP++ 
Sbjct: 170 NFSEAGFGPAVMENVTHSGYTKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQ 229

Query: 62  ILEKGRA------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            +  G              R   P  L+L PTRELA Q+     K+    NL  A+L GG
Sbjct: 230 HIMAGGPEMIKTPAFTNGRRTYFPSALVLSPTRELAIQIHKEASKFSYKTNLQTAILYGG 289

Query: 110 IP-FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
              +  Q  +L  GA +LI TPGR++D   +G + +     LV+DEADRMLDMGF P I+
Sbjct: 290 RENYRDQVNRLRSGAHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIR 349

Query: 169 NITSL---VPFTRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVAT 224
            I          R T +FSAT   E+Q ++++FL +N   + V    ST+E IE   +  
Sbjct: 350 KIVGQGMPAKTARTTAMFSATFPKEIQLLAKDFLKENYVFLAVGRVGSTSENIEQRLL-- 407

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
           +    +K   L ++L ++D+    ++F   K+    L + L +Q     +IHG++ Q  R
Sbjct: 408 WVNEMEKRQNLMEILMNEDSTNLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIER 467

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P  ++ Y+HRIGRTGR G  G 
Sbjct: 468 ERNLEMFRSGQFPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGI 527

Query: 345 AFTLVAKE------DIKHIDAIEKLIEKKVDWL 371
           A +    +      D+K++  I +  ++  DWL
Sbjct: 528 ATSFFNDKNRGIGRDLKNL--ILEANQEVPDWL 558


>gi|195502160|ref|XP_002098101.1| GE24123 [Drosophila yakuba]
 gi|194184202|gb|EDW97813.1| GE24123 [Drosophila yakuba]
          Length = 719

 Score =  239 bits (610), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 136/391 (34%), Positives = 214/391 (54%), Gaps = 16/391 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+++ L   V+  +   GY  PT IQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 284 DFSEVYLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIV 343

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +  ++   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 344 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 403

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 404 QRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 463

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCAL 234
           TL++SAT   E+++++E+FL N  +I + +   +A     + ++ C    +++  K   L
Sbjct: 464 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVC--DEFSKEEKLKTL 521

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  +  + ++    IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G
Sbjct: 522 LSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSG 581

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + 
Sbjct: 582 KSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNA 641

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
           K   A+       VD L      +NP LE +
Sbjct: 642 KQAKAL-------VDVLREANQEINPALENL 665


>gi|323187577|gb|EFZ72886.1| ATP-independent RNA helicase dbpA [Escherichia coli RN587/1]
          Length = 457

 Score =  239 bits (610), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 134/364 (36%), Positives = 212/364 (58%), Gaps = 8/364 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVRAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
             +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  VSLFQTQGLVLCPTRELADQVAGELRRLARFLLNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDW 370
           K++W
Sbjct: 363 KLNW 366


>gi|73969111|ref|XP_850120.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 2 [Canis
           familiaris]
          Length = 652

 Score =  239 bits (610), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 138/383 (36%), Positives = 214/383 (55%), Gaps = 22/383 (5%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 100 PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 159

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 160 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQ 237
           +SAT   E+++++E+FL++  +I V     +A     + ++ C  +   +  K   L+++
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESE--KDHKLIQLMEE 333

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   
Sbjct: 334 IMAEKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAP 391

Query: 298 LMVASDLAAR--GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +++A+D+A+R  GLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K
Sbjct: 392 ILIATDVASRGLGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLK 451

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
               + K++E+    +N  L  L
Sbjct: 452 QARELIKVLEEANQAINPKLMQL 474


>gi|315125225|ref|YP_004067228.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas sp. SM9913]
 gi|315013738|gb|ADT67076.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas sp. SM9913]
          Length = 466

 Score =  239 bits (610), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 132/347 (38%), Positives = 208/347 (59%), Gaps = 7/347 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L   +V  +   GY + TP+Q +++P VL   D+   A+TG+GKTA+F L +L  
Sbjct: 10  FSSLALPSGLVDNLSTLGYTQMTPVQAQSLPPVLSGKDIIAQAKTGSGKTAAFSLGVLAK 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R R++   +L+L PTRELA QVA    K  +  +N+ +  L GG+    Q   LE 
Sbjct: 70  LNVKRFRIQ---SLVLCPTRELAEQVAVEMRKLARGIHNIKILTLCGGVSIGPQIGSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  +G L ++++E LV+DEAD+MLDMGF   +  I   +P  RQTL
Sbjct: 127 GAHIIVGTPGRVDDHIRKGTLRLDDVETLVLDEADQMLDMGFQDTLDAIIECIPTNRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++ +++  L NP+ I+V      + TI+  F       +K+     +LL  
Sbjct: 187 LFSATFPKSIEAIAKRVLSNPEMIKVEEQQEKS-TIKQYFYKM--DNNKQRYPTLKLLLL 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T ++ ++FCN K     +C  L  +GFS  A+HG+++QR R + L +F   +  ++VA
Sbjct: 244 KFTPQSCVVFCNTKVETQQVCDDLADEGFSAVALHGDLEQRDRERTLIHFANKSASILVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +D+AARGLDI D+  V N+ + +  + ++HR+GRTGRAG+ G A ++
Sbjct: 304 TDVAARGLDIDDMDMVINYHLAHDPQTHVHRVGRTGRAGKKGIACSI 350


>gi|121707307|ref|XP_001271794.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
 gi|143359800|sp|A1CHL3|PRP28_ASPCL RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|119399942|gb|EAW10368.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
          Length = 798

 Score =  239 bits (610), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 137/431 (31%), Positives = 226/431 (52%), Gaps = 34/431 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + GL  +++  V   GY +PTPIQ   IP+ LQ  D+ G+A TG+GKTASF+LP+L  
Sbjct: 368 WEESGLPKRLLELVDRVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVY 427

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +       E    +   P  ++L PTRELA Q+    +K+ +     V  ++GG   E Q
Sbjct: 428 IAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTQPLGFNVVSIVGGHSLEEQ 487

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +P
Sbjct: 488 AYSLRNGAEIIIATPGRLVDCIERRILVLSQCCYIIMDEADRMIDLGFEEPVNKILDALP 547

Query: 176 FT--------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
            T                    RQT++++ATM   +++++  +L+ P  + + +     +
Sbjct: 548 VTNEKPDSDEAENSAAMRSHRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGSAGEAVD 607

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
           T+E   V   A   K+   L  +L S +     I+F N K+N   +   ++  GFS   +
Sbjct: 608 TVEQR-VELIAGEDKRKKRLADILSSGEFRPPIIVFVNIKRNCDAIAREIKHMGFSSVTL 666

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++    E+Y HRIGR
Sbjct: 667 HGSKTQDQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRIGR 726

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           TGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ    R 
Sbjct: 727 TGRAGKSGVAITFLGNEDADVMYDLKQML------MKSPISRVPEELRKHEAAQSKPTRG 780

Query: 396 NNPIPQKSTGF 406
                 +S+GF
Sbjct: 781 YAKKSDESSGF 791


>gi|195572651|ref|XP_002104309.1| GD18514 [Drosophila simulans]
 gi|194200236|gb|EDX13812.1| GD18514 [Drosophila simulans]
          Length = 713

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 130/352 (36%), Positives = 198/352 (56%), Gaps = 14/352 (3%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE----- 64
           P ++  +   G+ KP+PIQ +  P++LQ HD+ GIAQTGTGKT +F+LP +   E     
Sbjct: 297 PDMLGEITKMGFPKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTP 356

Query: 65  ---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +G A V     L+L PTRELA Q+     KY     +    + GG     Q   LER
Sbjct: 357 RGTRGGANV-----LVLAPTRELALQIEMEVNKYSFR-GMKAVCVYGGGDRNMQISDLER 410

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+++ICTPGR+ D      + ++ I  LV+DEADRMLDMGF P I+ +   +   RQT+
Sbjct: 411 GAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTI 470

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT    ++++++++++NP ++ V +    A       +        K   +   +++
Sbjct: 471 MTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIKLMEDDMAKFNTITSFVKN 530

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFC +K    +L   L   GF    IHGN DQ  R + +++ K G ++++VA
Sbjct: 531 MSDTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVA 590

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +D+A+RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + +   +ED
Sbjct: 591 TDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGRAGRQGTSISFFTRED 642


>gi|114794876|pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
           A Resolution
 gi|114794877|pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
           A Resolution
 gi|116668327|pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
           A Resolution
          Length = 410

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 209/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 39  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 98

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 99  LD---IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 155

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 156 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 215

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 216 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 274

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 275 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 330

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 331 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 390

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 391 IEQYYSTQIDEMPMNVADL 409


>gi|71897163|ref|NP_001025820.1| eukaryotic initiation factor 4A-III [Gallus gallus]
 gi|82197884|sp|Q5ZM36|IF4A3_CHICK RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|53127756|emb|CAG31207.1| hypothetical protein RCJMB04_3e17 [Gallus gallus]
          Length = 412

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 209/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 41  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 101 LD---IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 157

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 158 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 217

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 218 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 276

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 277 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 332

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 333 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 392

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 393 IEQYYSTQIDEMPMNVADL 411


>gi|261251481|ref|ZP_05944055.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
 gi|260938354|gb|EEX94342.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
          Length = 443

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 139/388 (35%), Positives = 209/388 (53%), Gaps = 10/388 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + K T IQ K IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MYFKDLGLDNRLLKNLKHFDFKKATEIQQKAIPVAIAGKDLLASSKTGSGKTLAFVLPML 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   + PR L+L PTRELA QV           +    L++GG  F  Q K L
Sbjct: 61  HKSLKNKAFSAKDPRALVLAPTRELAKQVYGELRSMLGGLSYDATLIVGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            +    ++ TPGR+ DH     L ++ +E LV+DEADRMLD+GF P ++ I +     R 
Sbjct: 121 RKYPKFIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+   E+  ++   L  PKRI V   S   + I   F         K A+L++
Sbjct: 181 QTLMFSATLDHAEVNDIAFEMLDAPKRIAVGAASEEHKDITQKFYLC-DHLDHKEAILER 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+ +   K  IIF   + +   L   L ++     A+ G+++Q  R  I+S F+    +
Sbjct: 240 ILE-EAQYKQLIIFTATRIDTERLTQKLNEKKLKAVALSGSLNQTQRNTIMSQFERAVFK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLDI +V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D    
Sbjct: 299 ILVTTDVASRGLDIANVTHVVNFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSF 358

Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNP 380
             +E  +++ + +     L G    L P
Sbjct: 359 KRVEAYLQQDLSFSELEGLIGKFKGLRP 386


>gi|120564784|gb|ABM30181.1| VASA3n [Paragonimus westermani]
          Length = 606

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 142/380 (37%), Positives = 215/380 (56%), Gaps = 18/380 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADL L+  +   V  A Y +PTP+Q   IP++    D+   AQTG+GKTA+F++P+L  
Sbjct: 133 FADLDLNRIIRNNVELAQYERPTPVQKHAIPIIASNRDLMACAQTGSGKTAAFLIPILNR 192

Query: 62  ILEKGRA-----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           ++E+G             R + P  LIL PTRELA+Q+ ++  K+     +   +L GG 
Sbjct: 193 MIEEGPGDSLIATMETNRRKQFPVALILAPTRELASQIFEDARKFAYRSRIRPCVLYGGA 252

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              AQ  ++ +G ++L+ TPGR+ D   RG++ +++   L++DEADRMLDMGF P I+ I
Sbjct: 253 DMRAQLIEVSKGCNLLVATPGRLTDAIERGRIGLDHCRFLILDEADRMLDMGFEPQIRRI 312

Query: 171 T---SLVPF-TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
               +L P   RQTL+FSAT   E+Q ++++FL     + V    ST+E I      ++ 
Sbjct: 313 VEQDNLPPSGKRQTLMFSATFPHEIQMLAKDFLSRYIFLAVGRVGSTSENITQSI--SWV 370

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           +  KK   L  LL S D     ++F   K+   +L   L  Q F V +IHG+  Q  R  
Sbjct: 371 EEDKKRDALVDLLSSSDPGVLTLVFVETKRGADSLEDYLFSQKFHVASIHGDRTQDDREL 430

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P+  E Y+HRIGRTGR G  G A 
Sbjct: 431 ALPCFRNGRTPILVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRVGNLGIAT 490

Query: 347 TLVAKEDIKHIDAIEKLIEK 366
           +    ++      + +L+E+
Sbjct: 491 SFFNDKNRNLARGLVELLEE 510


>gi|152995705|ref|YP_001340540.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150836629|gb|ABR70605.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 438

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 145/395 (36%), Positives = 217/395 (54%), Gaps = 24/395 (6%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+   TPIQ +++P +++  D+   AQTG+GKT +F + +L    K   R    + L++ 
Sbjct: 2   GFTTFTPIQEQSLPPMIEGKDILAQAQTGSGKTLAFSIALLL---KINPRFFGVQALVMC 58

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QV+    K  +   N+ V  L GG+PF  Q   LE GA +++ TPGR+++H  
Sbjct: 59  PTRELADQVSKEIRKVARYQDNIKVLSLCGGMPFGPQIGSLEHGAHIVVGTPGRLMEHLR 118

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +G L +N +  LV+DEADRMLDMGF+  I+ I  L P  RQTLLFSAT  D ++ +S+ F
Sbjct: 119 KGTLKLNALNTLVLDEADRMLDMGFVDSIREIVELTPSNRQTLLFSATYGDGIEAISKEF 178

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
              P  I+V         IE  FV   ++   KC  L   LQ  +  +  I+FCN K   
Sbjct: 179 QSTPISIKVEAQEDLKPNIEQFFV--RSENKDKCETLLATLQHFEP-RQAIVFCNTKAES 235

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +   L +   +  AIHG+++QR R ++L  F   +  ++VA+D+AARG+D+ ++  V 
Sbjct: 236 QVVADWLSEHKVAAQAIHGDLEQRQRDQVLVRFSNQSSCVLVATDVAARGIDVKEIDLVV 295

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           N+D     + + HRIGRTGRAG  G A  LV  +D   +  IE       +++  +L ++
Sbjct: 296 NYDTTRDTDVHTHRIGRTGRAGAAGIAVNLVTSKDDYKVRDIESRFNITANFI--ELEAI 353

Query: 379 NPPLEKIDIAQHNHARKNNPIPQKST-GFDRRKKN 412
           +P           H R    IPQK+T  FD  +KN
Sbjct: 354 DP-----------HYR---LIPQKTTISFDAGRKN 374


>gi|114051321|ref|NP_001039653.1| eukaryotic initiation factor 4A-III [Bos taurus]
 gi|154147644|ref|NP_001093663.1| eukaryotic initiation factor 4A-III [Sus scrofa]
 gi|157821621|ref|NP_001093628.1| eukaryotic initiation factor 4A-III [Rattus norvegicus]
 gi|126308661|ref|XP_001370945.1| PREDICTED: similar to Chain C, Structure Of The Human Exon Junction
           Complex With A Trapped Dead-Box Helicase Bound To Rna
           [Monodelphis domestica]
 gi|109825494|sp|Q2NL22|IF4A3_BOVIN RecName: Full=Eukaryotic initiation factor 4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|123780398|sp|Q3B8Q2|IF4A3_RAT RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|251764755|sp|A6M931|IF4A3_PIG RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|77748037|gb|AAI05876.1| Eukaryotic translation initiation factor 4A, isoform 3 [Rattus
           norvegicus]
 gi|84708898|gb|AAI11185.1| Eukaryotic translation initiation factor 4A, isoform 3 [Bos taurus]
 gi|85792296|gb|ABC84196.1| eukaryotic translation initiation factor 4A isoform 3 [Sus scrofa]
 gi|149054966|gb|EDM06783.1| rCG33565, isoform CRA_a [Rattus norvegicus]
 gi|296476097|gb|DAA18212.1| eukaryotic initiation factor 4A-III [Bos taurus]
          Length = 411

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 209/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 40  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 100 LD---IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 157 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 217 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 275

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 276 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 331

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 332 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 391

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 392 IEQYYSTQIDEMPMNVADL 410


>gi|323485086|ref|ZP_08090439.1| hypothetical protein HMPREF9474_02190 [Clostridium symbiosum
           WAL-14163]
 gi|323401642|gb|EGA93987.1| hypothetical protein HMPREF9474_02190 [Clostridium symbiosum
           WAL-14163]
          Length = 484

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 132/360 (36%), Positives = 205/360 (56%), Gaps = 6/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GLS  ++ ++   GY +PT IQ + IP +L+  +V G A TG+GKTA+F +P   I
Sbjct: 9   FGAYGLSDDILESLRLLGYERPTEIQQQVIPAMLEGKNVVGRAPTGSGKTAAFAIP---I 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +K      +P+ LILEPTREL  QV +     G+   L V  + GG P + Q + L++ 
Sbjct: 66  CDKIIWEENLPQALILEPTRELTVQVQEEVFHIGRKKRLKVPAVFGGFPIDKQIRSLKQK 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + ++  TPGR++DH  RG L+++ +  LVIDEAD MLDMGFI  ++ I  L+    +  L
Sbjct: 126 SHIVTGTPGRVMDHIRRGSLILDKVTCLVIDEADLMLDMGFIDEVKQILDLLSPECRIAL 185

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  E+++ + + + +   I    P +    I      T  +   K  L   +L  +
Sbjct: 186 FSATLKPEIREFAGSHIHDMVMIFTEQPEAAENAITEELFETDNENKFKVFL--NVLYRE 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  +  IIFC  ++ V  L   L +       IHG ++Q+ R+K +  F+ G I+ ++A+
Sbjct: 244 NP-QCCIIFCGTREMVNVLFQKLRRHRIFCGMIHGELEQKERLKTIDAFRRGAIRYLIAT 302

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+D+ ++ HV N+D P   E Y+HRIGRTGR GR GKA +LV  ED + +   E+
Sbjct: 303 DVAARGIDLENITHVINYDFPTGRETYVHRIGRTGRNGRTGKAVSLVTAEDRRMLQMTEE 362


>gi|194898941|ref|XP_001979021.1| GG10666 [Drosophila erecta]
 gi|190650724|gb|EDV47979.1| GG10666 [Drosophila erecta]
          Length = 720

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 136/391 (34%), Positives = 214/391 (54%), Gaps = 16/391 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+++ L   V+  +   GY  PT IQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 282 DFSEVYLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIV 341

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +  ++   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 342 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 401

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 402 QRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 461

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCAL 234
           TL++SAT   E+++++E+FL N  +I + +   +A     + ++ C    +++  K   L
Sbjct: 462 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVC--DEFSKEEKLKTL 519

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  +  + ++    IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G
Sbjct: 520 LSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSG 579

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + 
Sbjct: 580 KSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNA 639

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
           K   A+       VD L      +NP LE +
Sbjct: 640 KQAKAL-------VDVLREANQEINPALENL 663


>gi|289616156|emb|CBI57255.1| unnamed protein product [Sordaria macrospora]
          Length = 934

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 135/399 (33%), Positives = 223/399 (55%), Gaps = 35/399 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ K IPL+L+R DV G+A+TG+GKTA+FV+PM+  
Sbjct: 102 FQAMGLNAHLLRAITRKGFSVPTPIQRKAIPLILERKDVVGMARTGSGKTAAFVIPMIER 161

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    RV   R LI+ P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 162 LKGHSPRV-GARALIMSPSRELALQTLKVVKELGRGTDLKTVLLVGGDSLEEQFGMMAAN 220

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++++ +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 221 PDIIIATPGRFLHLKVEMSLSLSSVKYVVFDEADRLFEMGFATELTEILHALPPSRQTLL 280

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
           FSAT+   L + +   LQ P  + ++  +  +  +E  F A      K+ ALL  L    
Sbjct: 281 FSATLPSSLVEFARAGLQEPSLVRLDAETKVSPDLESAFFAVKGG-EKEGALLHILHDVI 339

Query: 239 ----------------LQSQD-------------TMKNGIIFCNQKKNVVNLCHSLEKQG 269
                           LQ++              T  + IIF   K +V  + + L+  G
Sbjct: 340 KVPLGAPEGTREESDELQAKKRKREYRPNPKEKPTEYSTIIFTATKHHVEYIQNLLKLAG 399

Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329
           F+V  ++G++DQ +R+  + NF+ G   ++V +D+AARG+D+P + +V N+D P++ + +
Sbjct: 400 FAVSYVYGSLDQTARLIQVDNFRRGRTHILVVTDVAARGIDMPALANVINYDFPSQPKIF 459

Query: 330 IHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           +HR+GRT RAG+ G A+ LV + D+ ++  ++  + +K+
Sbjct: 460 VHRVGRTARAGQRGWAYGLVRQSDLPYLLDLQLFLGRKL 498


>gi|251764757|sp|B5FZY7|IF4A3_TAEGU RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|197128100|gb|ACH44598.1| putative DEAD box polypeptide 48 [Taeniopygia guttata]
          Length = 410

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 209/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 39  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 98

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 99  LD---IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 155

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 156 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 215

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 216 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 274

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 275 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 330

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 331 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 390

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 391 IEQYYSTQIDEMPMNVADL 409


>gi|125537372|gb|EAY83860.1| hypothetical protein OsI_39082 [Oryza sativa Indica Group]
          Length = 630

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 132/366 (36%), Positives = 213/366 (58%), Gaps = 11/366 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++ A LG+SPK+V  +   G  K  PIQ   +   +Q  D+ G A+TGTGKT +F +P+L
Sbjct: 98  LEVAKLGISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPIL 157

Query: 61  TILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             + +   +    + P  ++L PTRELA QV   F     + N+    + GG P   Q +
Sbjct: 158 DAIIRHNEKNSPGKFPLAIVLAPTRELAKQVEREFSD---SSNVETICVYGGTPISQQIR 214

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G DV+I TPGR++D   RG L ++ +  +V+DEAD+ML +GF   ++ I   VP  
Sbjct: 215 QLNYGVDVVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPK 274

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALL 235
           RQTL+FSATM   ++++++ +L+NP  I++        AE I    +A+      K A+L
Sbjct: 275 RQTLMFSATMPTWIRRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGH--AKPAVL 332

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +L++        I+F   K++   L +++ +  F   A+HG+I Q  R + L  F+EG 
Sbjct: 333 GELIKEHAKGGKCIVFTQTKRDADRLSYTMGRS-FQCQALHGDITQAQRERTLKGFREGH 391

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +++A+D+AARGLDIP+V  V +F++PN +E ++HR GRTGRAG+ GKA  + + +  +
Sbjct: 392 FNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSR 451

Query: 356 HIDAIE 361
            I  +E
Sbjct: 452 AIRMVE 457


>gi|40891625|gb|AAR37337.1| vasa-like protein [Crassostrea gigas]
          Length = 758

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 212/363 (58%), Gaps = 17/363 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F + GL  K +  V  A Y KPTP+Q  +IP+V+   D+   AQTG+GKTA+F+LP+LT
Sbjct: 311 NFDEAGLYEKFLENVRKAQYEKPTPVQKYSIPIVMAGRDLMACAQTGSGKTAAFLLPVLT 370

Query: 62  ILEKGR------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            + K        + V+ P+ L++ PTRELA Q+  +  K+     L   +L GG     Q
Sbjct: 371 GMMKNGISGSSFSEVQEPQALVVAPTRELAVQIFMDARKFAHGTMLRAVVLYGGTSVGYQ 430

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV- 174
            +++E+G  +L+ TPGR++D   +GK+ ++ ++ L++DEADRMLDMGF P I+ +   + 
Sbjct: 431 LRQVEQGTHILVGTPGRLIDIIGKGKISLSKLKYLILDEADRMLDMGFGPDIRKLVEELG 490

Query: 175 --PFT-RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYS 229
             P T RQTL+FSAT  +E+QK++ +FL +   + V         +      V    + S
Sbjct: 491 TPPKTERQTLMFSATFPEEIQKMAGDFLNDYLFLTVGRVGGACTDVTQTVYEVDRQEKRS 550

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + C +L +   S+ T+    +F  QK+N   L   L + GF   +IHG+  Q  R + L 
Sbjct: 551 RLCDILTET-GSEKTL----VFVEQKRNADFLASYLSQNGFPTTSIHGDRLQAEREEALR 605

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK G   +++A+ +AARGLDIP V HV N+D+P   + Y+HRIGRTGR G  GKA +  
Sbjct: 606 DFKLGKAPVLIATSVAARGLDIPLVKHVINYDLPQSIDEYVHRIGRTGRCGNLGKAISFY 665

Query: 350 AKE 352
           + +
Sbjct: 666 SND 668


>gi|195938012|ref|ZP_03083394.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4024]
          Length = 457

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 134/364 (36%), Positives = 212/364 (58%), Gaps = 8/364 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +  + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKDTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDW 370
           K++W
Sbjct: 363 KLNW 366


>gi|170083961|ref|XP_001873204.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650756|gb|EDR14996.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 355

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 139/351 (39%), Positives = 205/351 (58%), Gaps = 9/351 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-- 63
           + LS  ++ ++   G+ KPTPIQ   IP+ L   DV G A TG+GKTA+F++PM+  L  
Sbjct: 1   MNLSRPLLKSIASLGFNKPTPIQAAAIPVALLGKDVVGNAMTGSGKTAAFIIPMVERLLY 60

Query: 64  -EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            EKG+ +    R L+L PTRELA Q  D   K   + ++ + LL+GG+  ++Q   L   
Sbjct: 61  REKGK-KAAATRCLVLVPTRELAVQCFDVGVKLSTHTDIQLCLLVGGLSLKSQEVALRAR 119

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR++DH  N     ++ I+ILV+DEADRML  GF   +  I    P +RQT+
Sbjct: 120 PDIVIATPGRLIDHIRNSPAFTLDAIDILVLDEADRMLSDGFADELAEIIKSCPVSRQTM 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQLLQ 240
           LFSATMTD + ++ +  L  P R+ V+   +TA  +   FV   A + S++ ALL  L  
Sbjct: 180 LFSATMTDSVDELVKMSLNKPVRLFVDPRKATARGLVQEFVRVRAGKDSERSALLVAL-- 237

Query: 241 SQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + T KN  IIF   KK    +       G     +HG++ Q  R+K L  F++G +  +
Sbjct: 238 CKRTFKNRVIIFLRSKKLAHQMRIVFSLLGLKCEELHGDLSQEQRLKALQLFRDGQVDFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           +A+DLA+RGLDI  V  + N+D+P +   Y+HR+GRT RAG+ G+   LVA
Sbjct: 298 MATDLASRGLDIKGVETIINYDMPGQLSQYLHRVGRTARAGKQGRVHILVA 348


>gi|134102389|ref|YP_001108050.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915012|emb|CAM05125.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 496

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 139/401 (34%), Positives = 215/401 (53%), Gaps = 11/401 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  ++V A+ D G  +  PIQ  TIP  L   DV G  QTG+GKT +F LP+L  
Sbjct: 17  FDSLGLPERLVRALGDLGMTEAFPIQAATIPDALGGRDVLGRGQTGSGKTLAFGLPLLA- 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++   AR   PR L+L PTRELA QV D+ +   K   L V  ++GG+ F  Q   L RG
Sbjct: 76  MQGSSARPLHPRGLVLVPTRELATQVTDSLKPLAKALGLYVREVVGGMSFSRQADTLRRG 135

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVL+ TPGR+ DH  +G  +++ +E   +DEAD+M DMGF+P ++ +  LVP   Q LL
Sbjct: 136 VDVLVATPGRLSDHVRQGTCVLSEVERTALDEADQMADMGFLPQVRELLDLVPADGQRLL 195

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  ++ K+   ++ +P    +  P+++ ++++H  +   A+  +K  +L ++   +
Sbjct: 196 FSATLDGDVDKLVHEYMTDPVVHSLAPPAASVDSMDHHQLLVTAE--QKQDVLARIGARE 253

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F   K +   L   L   G    A+HG   Q +R +IL  F++G    +VA+
Sbjct: 254 GRT---IMFVRTKHHADRLTRKLRAAGVRAGALHGGKAQNARSRILEEFRQGGTTTLVAT 310

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE- 361
           ++AARG+ + DV  V + + P   ++Y+HR GRT RAG  G   TLV  +  +   A+  
Sbjct: 311 NVAARGIHVDDVSLVVHVEPPADPKDYLHRAGRTARAGATGTVVTLVTDDQKRAFRAMTA 370

Query: 362 ----KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
               +    KV   + +L+ L    E   IA     R  +P
Sbjct: 371 KAGVEATATKVAPADEELARLTGAREPSGIAVTEPKRGESP 411


>gi|332113313|gb|AEE02033.1| X-linked DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Sus scrofa]
          Length = 661

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 219/392 (55%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 182 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 242 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 301

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 302 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 361

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 362 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 420

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + S K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 421 -WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 479

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 480 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 539

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +     D ++ L+E K +   WL
Sbjct: 540 LATSFFNERNANITKDLLDLLVEAKQEVPSWL 571


>gi|311276166|ref|XP_003135075.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 1 [Sus
           scrofa]
          Length = 662

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 219/392 (55%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 182 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 242 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 301

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 302 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 361

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 362 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 420

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + S K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 421 -WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 479

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 480 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 539

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +     D ++ L+E K +   WL
Sbjct: 540 LATSFFNERNANITKDLLDLLVEAKQEVPSWL 571


>gi|293414669|ref|ZP_06657318.1| ATP-independent RNA helicase DbpA [Escherichia coli B185]
 gi|291434727|gb|EFF07700.1| ATP-independent RNA helicase DbpA [Escherichia coli B185]
          Length = 457

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 132/352 (37%), Positives = 207/352 (58%), Gaps = 8/352 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   A +   + L+L 
Sbjct: 22  GYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID---ASLFQTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF  Q   L+    +++ TPGR+LDH  
Sbjct: 79  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT  + +  +S   
Sbjct: 139 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRV 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            ++P  IE+++ +     I+  F  T ++   K  LLQ+LL S     + ++FCN KK+ 
Sbjct: 199 QRDPLAIEIDS-TDALPPIDQQFYETSSK--GKIPLLQRLL-SLHQPSSCVVFCNTKKDC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L + G S  ++HG+++QR R + L  F  G+  ++VA+D+AARGLDI  +  V 
Sbjct: 255 QAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSACVLVATDVAARGLDIKSLELVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ K++W
Sbjct: 315 NFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNW 366


>gi|260771800|ref|ZP_05880718.1| ATP-dependent RNA helicase SrmB [Vibrio metschnikovii CIP 69.14]
 gi|260613092|gb|EEX38293.1| ATP-dependent RNA helicase SrmB [Vibrio metschnikovii CIP 69.14]
          Length = 411

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 207/368 (56%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++ A+ + G+ +PT +Q + IP  L   D+   A TGTGKTA+FV+P L  
Sbjct: 5   FADLELDDNLLDAIKELGFERPTQVQEEAIPHALDGRDILASAPTGTGKTAAFVIPALQY 64

Query: 63  LEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+   R +    R LIL PTRELA Q+ +   +  K+  L +  + GG+ ++     L  
Sbjct: 65  LQDFPRKKPGPARMLILTPTRELAMQITEQARQLAKHTRLNIFTITGGVQYQEHADILAT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+L++ N  +     IE L++DEADRMLDMGF P +  + +   + +QTL
Sbjct: 125 TQDIVVATPGRLLEYINAERFDCRAIEWLILDEADRMLDMGFGPVVDRLAAECRWRKQTL 184

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+    ++  + + L NP  I    P    + I   +    +    K  LL+ +L 
Sbjct: 185 LFSATLEGRGVEGFTADLLNNPAEITAEPPRRERKKIAQWYHRADS-MKHKLELLKVILT 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   +  I+F   ++ +  L   LE+       I G + Q  R   +S F+EG I +++
Sbjct: 244 QQ--AERSIVFIKTRERLAELRGELERAQIPCAWIQGEMPQDRRNNAISRFREGDINILL 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DIPDV HV NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D   +D +
Sbjct: 302 ATDVAARGIDIPDVSHVINFDMPRSADVYLHRIGRTARAGKKGNAISLVEAHDQMMMDRV 361

Query: 361 EKLIEKKV 368
            + +++++
Sbjct: 362 ARYVKEEI 369


>gi|168762636|ref|ZP_02787643.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4501]
 gi|189367023|gb|EDU85439.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4501]
          Length = 457

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 134/364 (36%), Positives = 211/364 (57%), Gaps = 8/364 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA  VA       +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADHVASELRPLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDW 370
           K++W
Sbjct: 363 KLNW 366


>gi|169837346|ref|ZP_02870534.1| ATP-dependent RNA helicase [candidate division TM7 single-cell
           isolate TM7a]
          Length = 477

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 143/386 (37%), Positives = 216/386 (55%), Gaps = 24/386 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIP-LVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F D GLS +++ A+   G+ +P+ IQ   IP L+ +R  + G AQTGTGKTA+F +P+L 
Sbjct: 4   FEDFGLSIEMLNALSKKGFEEPSEIQKLVIPELLKERTHLIGQAQTGTGKTAAFGIPILE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +E  +      R LIL PTRELA QVAD         +L V  + GG   E Q KKL+ 
Sbjct: 64  TIEADKT----VRALILAPTRELANQVADEIYSLKGEKDLKVLAVYGGASIENQIKKLKS 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR++D   +  L ++ ++  V+DEAD ML+MGF+  I+ I       ++ L
Sbjct: 120 GVDIVVGTPGRVMDLMRKKILKVDKLDYFVLDEADEMLNMGFLEDIEAILEKTNDEKKML 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT+   +  +++ F+   K ++V     T    E  +     Q  K  AL + L   
Sbjct: 180 FFSATIPKAIMAIAKKFMPEHKLLKVAKKELTTNLTEQIYYEV-KQEDKFEALCRVLDYE 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           QD    GI+FC  K  V ++ + L+ + +    IHG+I Q  R K L  FK+  + ++VA
Sbjct: 239 QDFY--GIVFCRTKSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKKILTILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV------------ 349
           +D+AARG+D+ ++ HV N+ +P  AE+Y+HRIGRTGRAG+ G A T V            
Sbjct: 297 TDVAARGIDVSNLTHVINYSIPQEAESYVHRIGRTGRAGQKGVAITFVTPREASKLAQIK 356

Query: 350 --AKEDIK--HIDAIEKLIEKKVDWL 371
              K +IK  HI  +E+++E K + L
Sbjct: 357 RITKTEIKREHIPNVEEILEAKKEAL 382


>gi|315043240|ref|XP_003170996.1| ATP-dependent RNA helicase drs1 [Arthroderma gypseum CBS 118893]
 gi|311344785|gb|EFR03988.1| ATP-dependent RNA helicase drs1 [Arthroderma gypseum CBS 118893]
          Length = 814

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 136/357 (38%), Positives = 201/357 (56%), Gaps = 3/357 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L  
Sbjct: 301 FQNLSLSRPILRGLASVGFSAPTPIQKKTIPVALLGKDVVGGAVTGSGKTGAFIVPILER 360

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++ 
Sbjct: 361 LLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKR 420

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 421 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKSRQTM 480

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMT+ + K+    L  P R+ V++   T  T+   FV     +  K+   L  L +
Sbjct: 481 LFSATMTNSVDKLIRVGLNKPVRLMVDSKKQTVGTLVQEFVRLRPGREDKRLGYLMFLCK 540

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  T +  I+F  QKK    +       G     +HG++ Q  R+K + +F++  +  ++
Sbjct: 541 TVYTNRV-IVFFRQKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVEDFRDAKVSYLL 599

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K +
Sbjct: 600 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVV 656


>gi|290959211|ref|YP_003490393.1| ATP-dependent RNA helicase [Streptomyces scabiei 87.22]
 gi|260648737|emb|CBG71850.1| putative ATP-dependent RNA helicase [Streptomyces scabiei 87.22]
          Length = 765

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 132/346 (38%), Positives = 187/346 (54%), Gaps = 5/346 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP+L  
Sbjct: 37  FATLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLAQ 96

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G    + PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LERG
Sbjct: 97  LAGGHTERKKPRGVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERG 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+ D  NRG   + N +I V+DEAD+M D+GF+P +  +   VP   Q +L
Sbjct: 157 VDILVATPGRLRDIINRGACSLENTQIAVLDEADQMSDLGFLPEVTELLDQVPAGGQRML 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E+  + + +L NP   EV++      T+ H  +       K  A +   + S+
Sbjct: 217 FSATMENEISTLVKRYLSNPVTHEVDSAQGNVTTMSHHILIV---KPKDKAPVTAAIASR 273

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L   G    A+HG + Q +R + L++FK+G +  +VA+
Sbjct: 274 KGRT--IIFVRTQLGADRIAEQLRDSGVKADALHGGMTQGARTRTLADFKDGYVNALVAT 331

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L
Sbjct: 332 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSL 377


>gi|126325503|ref|XP_001378186.1| PREDICTED: similar to helicase like protein 2 [Monodelphis
           domestica]
          Length = 829

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 217/392 (55%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 348 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 407

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 408 IYTDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 467

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 468 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 527

Query: 168 QNI----TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 528 RRIVEQDTMPQKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 586

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + + K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 587 -WVEEADKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 645

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 646 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 705

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +     +I    D ++ L+E K +   WL
Sbjct: 706 LATSFFNDRNINITKDLLDLLVEAKQEVPSWL 737


>gi|7661920|ref|NP_055555.1| eukaryotic initiation factor 4A-III [Homo sapiens]
 gi|109118862|ref|XP_001110130.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Macaca
           mulatta]
 gi|297701955|ref|XP_002827960.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Pongo abelii]
 gi|332263899|ref|XP_003280987.1| PREDICTED: eukaryotic initiation factor 4A-III [Nomascus
           leucogenys]
 gi|20532400|sp|P38919|IF4A3_HUMAN RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           initiation factor 4A-like NUK-34; AltName:
           Full=Eukaryotic translation initiation factor 4A isoform
           3; AltName: Full=Nuclear matrix protein 265; Short=NMP
           265; Short=hNMP 265
 gi|295982193|pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
           Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
           Machinery
 gi|295982194|pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
           Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
           Machinery
 gi|13177790|gb|AAH03662.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo
           sapiens]
 gi|13325146|gb|AAH04386.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo
           sapiens]
 gi|15029856|gb|AAH11151.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo
           sapiens]
 gi|48145617|emb|CAG33031.1| DDX48 [Homo sapiens]
 gi|60655857|gb|AAX32492.1| DEAD-box polypeptide 48 [synthetic construct]
 gi|119609990|gb|EAW89584.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, isoform CRA_a [Homo
           sapiens]
 gi|119609991|gb|EAW89585.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, isoform CRA_a [Homo
           sapiens]
 gi|158254648|dbj|BAF83297.1| unnamed protein product [Homo sapiens]
 gi|168274374|dbj|BAG09607.1| eukaryotic initiation factor 4A-III [synthetic construct]
          Length = 411

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 209/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 40  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 100 LD---IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 157 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 217 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 275

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 276 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 331

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 332 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 391

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 392 IEQYYSTQIDEMPMNVADL 410


>gi|20149756|ref|NP_619610.1| eukaryotic initiation factor 4A-III [Mus musculus]
 gi|42560197|sp|Q91VC3|IF4A3_MOUSE RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|14198152|gb|AAH08132.1| Eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|15277517|gb|AAH12862.1| Eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|74138617|dbj|BAE27130.1| unnamed protein product [Mus musculus]
 gi|74142343|dbj|BAE31931.1| unnamed protein product [Mus musculus]
 gi|74146845|dbj|BAE41387.1| unnamed protein product [Mus musculus]
 gi|74186129|dbj|BAE34233.1| unnamed protein product [Mus musculus]
 gi|74188979|dbj|BAE39256.1| unnamed protein product [Mus musculus]
 gi|74212198|dbj|BAE40258.1| unnamed protein product [Mus musculus]
 gi|74214032|dbj|BAE29433.1| unnamed protein product [Mus musculus]
 gi|74220630|dbj|BAE31525.1| unnamed protein product [Mus musculus]
 gi|122889626|emb|CAM14996.1| eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|123264877|emb|CAM18884.1| eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|148702746|gb|EDL34693.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48 [Mus musculus]
          Length = 411

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 209/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 40  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQC 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 100 LD---IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 157 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 217 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 275

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 276 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 331

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 332 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 391

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 392 IEQYYSTQIDEMPMNVADL 410


>gi|17985987|ref|NP_536783.1| belle [Drosophila melanogaster]
 gi|74947986|sp|Q9VHP0|DDX3_DROME RecName: Full=ATP-dependent RNA helicase bel; AltName: Full=Protein
           belle
 gi|7299061|gb|AAF54262.1| belle [Drosophila melanogaster]
          Length = 798

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 151/387 (39%), Positives = 217/387 (56%), Gaps = 23/387 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ L+  +   V  A Y KPTP+Q   IP+++   D+   AQTG+GKTA+F++P+L  
Sbjct: 297 FDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQ 356

Query: 62  ILEKGRA-----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           + E G             R + P  L+L PTRELA Q+ +  +K+     +  A+L GG 
Sbjct: 357 MYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGN 416

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L+RG  +++ TPGR+ D   RGK+ + NI  LV+DEADRMLDMGF P I+ I
Sbjct: 417 NTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRI 476

Query: 171 TSLV--PFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
              +  P T  RQTL+FSAT   ++Q+++ +FL N   + V    ST+E I    +  Y 
Sbjct: 477 VEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYE 536

Query: 227 --QYSKKCALLQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             + S    LL  +    +  K+   +IF   KK   +L   L +    V +IHG+  Q+
Sbjct: 537 PDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQK 596

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 597 EREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNL 656

Query: 343 GKAFTLVAKEDIKHI--DAIEKLIEKK 367
           G A T    E  ++I  D +E LIE K
Sbjct: 657 GVA-TSFFNEKNRNICSDLLELLIETK 682


>gi|326430586|gb|EGD76156.1| DEAD box polypeptide 17 isoform 2 [Salpingoeca sp. ATCC 50818]
          Length = 629

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 142/391 (36%), Positives = 207/391 (52%), Gaps = 18/391 (4%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVR 71
           VCA  +    KP+PIQ  T  +VL+  DV GIA TG+GKT +F LP L  +  +G     
Sbjct: 226 VCATFE----KPSPIQKHTWSIVLRGRDVVGIAATGSGKTLAFGLPGLVHVAARGTPGRG 281

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKLERGADVLICT 129
            P  L++ PTRELA Q        GK  N  L V  + GG     Q   + +   V++ T
Sbjct: 282 RPFMLVISPTRELAMQTGKVLSDAGKGMNTPLNVQCIFGGAQRREQMDAMRKPVHVIVAT 341

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGR+LD    G + ++ +   V+DEADRMLDMGF   I+ I + +P  RQT++FSAT   
Sbjct: 342 PGRLLDLCEAGSIDLSAVTFNVLDEADRMLDMGFERDIKRIMAQMPTPRQTVMFSATWPQ 401

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
           E++++++++L  P ++ V +    A       V       K   LL  L +   + KN +
Sbjct: 402 EVRRIAKDYLNRPVKVTVGSDDLAASKNVTQIVEVIDPKQKNGRLLDLLRKYHKSRKNKV 461

Query: 250 -IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
            +F   KK    L   L+ +G++  AIHG++ Q  R ++L  FK G + LM+A+D+AARG
Sbjct: 462 LVFALYKKEAARLEQFLQYKGYNTKAIHGDLSQGDRNRVLQEFKSGEVPLMIATDVAARG 521

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           LD+PDV +V N+  P   E Y+HRIGRTGRAG  G A TL  + D  H   +  ++    
Sbjct: 522 LDVPDVEYVINYTFPLTIEEYVHRIGRTGRAGAKGTAHTLFTQHDKHHAGGLGNVLR--- 578

Query: 369 DWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
                  + +  P   +   QH   RK +PI
Sbjct: 579 ------AAGVTVPEALMKFGQHTK-RKVHPI 602


>gi|195330652|ref|XP_002032017.1| GM26328 [Drosophila sechellia]
 gi|194120960|gb|EDW43003.1| GM26328 [Drosophila sechellia]
          Length = 797

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 151/387 (39%), Positives = 217/387 (56%), Gaps = 23/387 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ L+  +   V  A Y KPTP+Q   IP+++   D+   AQTG+GKTA+F++P+L  
Sbjct: 296 FDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQ 355

Query: 62  ILEKGRA-----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           + E G             R + P  L+L PTRELA Q+ +  +K+     +  A+L GG 
Sbjct: 356 MYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGN 415

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L+RG  +++ TPGR+ D   RGK+ + NI  LV+DEADRMLDMGF P I+ I
Sbjct: 416 NTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRI 475

Query: 171 TSLV--PFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
              +  P T  RQTL+FSAT   ++Q+++ +FL N   + V    ST+E I    +  Y 
Sbjct: 476 VEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYE 535

Query: 227 --QYSKKCALLQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             + S    LL  +    +  K+   +IF   KK   +L   L +    V +IHG+  Q+
Sbjct: 536 PDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQK 595

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 596 EREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNL 655

Query: 343 GKAFTLVAKEDIKHI--DAIEKLIEKK 367
           G A T    E  ++I  D +E LIE K
Sbjct: 656 GVA-TSFFNEKNRNICSDLLELLIETK 681


>gi|91084021|ref|XP_975350.1| PREDICTED: similar to pre-mRNA-splicing ATP-dependent RNA helicase
           PRP28 [Tribolium castaneum]
 gi|270008001|gb|EFA04449.1| hypothetical protein TcasGA2_TC014753 [Tribolium castaneum]
          Length = 762

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 127/382 (33%), Positives = 209/382 (54%), Gaps = 34/382 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + G+  +++  +   GY +PTPIQ + IP+ +Q  D+ G+A+TG+GKT +F++P+L+ 
Sbjct: 338 WKESGIQKELLEIIDKVGYKEPTPIQRQAIPIGMQNRDIIGVAETGSGKTLAFLIPLLSW 397

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      E+     + P  +IL PTRELA Q+ +   K+G+   +   +++GG+  E Q 
Sbjct: 398 IQSLPKIERTEDADQGPYAIILAPTRELAQQIEEETVKFGQPLGIRTVVVVGGLSREEQG 457

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L++N    +V+DEADRM+D+GF   +Q I   +P 
Sbjct: 458 FRLRMGCEIVIATPGRLIDVLENRYLVLNQCTYIVMDEADRMIDLGFEADVQKILEYMPV 517

Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           T                         RQT++F+ATM   +++++  +L+ P  + + +  
Sbjct: 518 TNLKPDSEEAEDSKIILANYNSKKKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSIG 577

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
              E +E   V    +  K+  L++ L +  D     IIF NQKK    L   LEK G++
Sbjct: 578 KPTERVEQ-IVHIMTENDKRKKLMEYLSKGVDP--PIIIFVNQKKGADVLAKGLEKLGYN 634

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
            C +HG   Q  R   L++ K G   ++VA+D+A RG+DI DV  V N+D+    E+Y H
Sbjct: 635 ACTLHGGKGQEQREYALASLKSGAKDILVATDVAGRGIDIKDVSVVINYDMAKTIEDYTH 694

Query: 332 RIGRTGRAGRHGKAFTLVAKED 353
           RIGRTGRAG+ G A +    +D
Sbjct: 695 RIGRTGRAGKSGVAISFCTNDD 716


>gi|330947853|ref|XP_003306985.1| hypothetical protein PTT_20304 [Pyrenophora teres f. teres 0-1]
 gi|311315219|gb|EFQ84923.1| hypothetical protein PTT_20304 [Pyrenophora teres f. teres 0-1]
          Length = 893

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 131/391 (33%), Positives = 212/391 (54%), Gaps = 41/391 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ K +PL+LQ  DV G+A+TG+GKTA+FV+PM+  
Sbjct: 79  FQAMGLNAALLKAIAQKGFKIPTPIQRKAVPLMLQGEDVVGMARTGSGKTAAFVIPMIQK 138

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+V   R +I+ P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 139 LKAHSAKV-GARGIIMSPSRELALQTLKVVKELGRGTDLRTILLVGGDSLEEQFSSMTTN 197

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L ++++  +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 198 PDIIIATPGRFLHLKVEMGLDLSSVRYIVFDEADRLFEMGFAAQLSEILHALPASRQTLL 257

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-------------------- 222
           FSAT+   L + +   LQ PK I ++  S  +  ++  +                     
Sbjct: 258 FSATLPKSLVEFARAGLQEPKLIRLDAESKISPDLKSAYFTIKSGDRDGALLHLLDNVIK 317

Query: 223 ---------------ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
                          A  A  SKK    +  ++     ++ IIF   K  V  L + L  
Sbjct: 318 VPVGETDASKKAKEDAEKASNSKKRKRSEGFVKDVPIAESTIIFAATKHRVEYLSNLLRN 377

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            G++V  ++GN+DQ +R + + +F+ G  +++V +D+AARG+D+P + HV N+D P++ +
Sbjct: 378 AGYAVSYVYGNLDQTARKEQIQDFRTGLTRILVVTDVAARGVDMPHINHVINYDFPSQPK 437

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
            ++HR+GRT RAGR G A++L      +H+D
Sbjct: 438 IFVHRVGRTARAGRKGWAYSLC-----RHVD 463


>gi|323306983|gb|EGA60267.1| Dbp1p [Saccharomyces cerevisiae FostersO]
          Length = 452

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 138/343 (40%), Positives = 194/343 (56%), Gaps = 19/343 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL---------EKGRA- 68
           A + KPTP+Q  +IP+V +  D+   AQTG+GKT  F+ P+ T L         EK ++ 
Sbjct: 7   ASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSF 66

Query: 69  --RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
             R   P  L+L PTRELA Q+ +   K+     +   ++ GG P   Q ++++RG D+L
Sbjct: 67  YSRKGYPXALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLL 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLL 182
           + TPGR+ D   RGK+ + NI+ LV+DEADRMLDMGF P I++I           RQTL+
Sbjct: 127 VATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSVENRQTLM 186

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT   ++Q ++ +FL N   + V    ST+E I    +       KK ALL  L    
Sbjct: 187 FSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYV-DDMDKKSALLDLLSAEH 245

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   +IF   K+    L   L  Q F   AIHG+  Q  R + LS FK     ++VA+
Sbjct: 246 KGLT--LIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADILVAT 303

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
            +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A
Sbjct: 304 AVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVA 346


>gi|322692214|gb|EFY84155.1| dependent RNA helicase drs-1 [Metarhizium acridum CQMa 102]
          Length = 780

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 134/359 (37%), Positives = 202/359 (56%), Gaps = 3/359 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  ++  +   G+ KPTPIQ KTIP+ L   D+ G A TG+GKT +F +P+L  
Sbjct: 255 FQGMSLSRPILRGLAAVGFTKPTPIQAKTIPIALMGKDLVGGAVTGSGKTGAFFVPILER 314

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     ++   R ++L PTRELA Q  D   K  +  ++  +L +GG+  +AQ  +L   
Sbjct: 315 LLFRPKKIPTTRVVVLTPTRELAMQCHDVGTKLARYTDIKFSLAVGGLSLKAQEVELRLR 374

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D+++ TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 375 PDIIVATPGRFIDHMRNSASFNVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTM 434

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMT  + ++    L  P R+ V++   T  T+   FV     +  K+   L  L +
Sbjct: 435 LFSATMTSTVDRLIRAGLNKPVRLMVDSQKKTVTTLVQEFVRLRPGREDKRMGYLAYLCK 494

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +    +  IIF  QKK            G S   +HG+++Q  R+  +  F++G +  ++
Sbjct: 495 TF-YHERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQSQRISSVEAFRDGKVSYLL 553

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G A TL A+ D K + A
Sbjct: 554 ATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRKGTAVTLAAEGDRKVVKA 612


>gi|240949168|ref|ZP_04753515.1| ATP-dependent RNA helicase RhlB [Actinobacillus minor NM305]
 gi|240296471|gb|EER47107.1| ATP-dependent RNA helicase RhlB [Actinobacillus minor NM305]
          Length = 404

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 137/367 (37%), Positives = 220/367 (59%), Gaps = 9/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D  +   V+ A+   G+   TPIQ KT+P+ L+ +D+ G AQTGTGKT +F++     
Sbjct: 10  FIDFSIHENVLAALESKGFEFCTPIQAKTLPITLKGNDIAGQAQTGTGKTMAFLIATFHH 69

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  + ++    PR LIL PTRELA Q+A + E   K+ +L +AL  GG  +E Q + +E
Sbjct: 70  LLTNECQSNKNQPRALILAPTRELAVQIASDAELLVKHSDLKLALAYGGDGYEKQVEAIE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ- 179
           +G D+L+ T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P   Q 
Sbjct: 130 KGVDILVGTTGRVIDYVKQGIINLDCIQVIVLDEADRMFDLGFIKDIRYLMRKCPKPEQR 189

Query: 180 -TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237
            T+LFSAT++  +++++   + N   +E+     T   I E  F   Y     K ALL  
Sbjct: 190 LTMLFSATLSPRVRELAYEDMNNASYVEIEPLQRTGHRIKEELF---YPSNEDKMALLLT 246

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +   +  +IF N K+    +   L   G  V  + G+I Q+ R+ +L +F +G + 
Sbjct: 247 LLEEE-WPERCMIFANTKQKCEEIWQYLLADGHRVGLLTGDIAQKKRLALLDSFTKGELD 305

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP+V HVFN+D+P+  E+Y+HRIGRTGRAG+ G + +   +    ++
Sbjct: 306 ILVATDVAARGLHIPEVTHVFNYDLPDDREDYVHRIGRTGRAGQSGHSISFACERYAVNL 365

Query: 358 DAIEKLI 364
            AIE+ I
Sbjct: 366 PAIEEYI 372


>gi|73964736|ref|XP_533130.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 48
           isoform 1 [Canis familiaris]
          Length = 411

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 209/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 40  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 100 LD---IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 157 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 217 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 275

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 276 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 331

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 332 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 391

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 392 IEQYYSTQIDEMPMNVADL 410


>gi|159040018|ref|YP_001539271.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           arenicola CNS-205]
 gi|157918853|gb|ABW00281.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
           CNS-205]
          Length = 469

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 128/352 (36%), Positives = 194/352 (55%), Gaps = 10/352 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DFA LGL   +V A+   G   P  IQ  T+P  L   DV G  QTG+GKT +F LP+L
Sbjct: 17  VDFAALGLPQPLVRALARQGITAPFEIQRATMPDALAGRDVLGRGQTGSGKTLAFGLPLL 76

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G RAR R PR L+L PTRELA QV+D     G+   + +   +GG+P++ Q   L
Sbjct: 77  ARLADGERARPRHPRALVLVPTRELAMQVSDALFPLGRTIGVFLRTAVGGVPYDRQISAL 136

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +VL+ TPGR+ D   RG   +++IE+ V+DEAD+M DMGF+P +  + +  P   Q
Sbjct: 137 RRGVEVLVATPGRLADLIERGVCRLDDIEVTVLDEADQMADMGFLPEVTELLAKTPADAQ 196

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQ 237
            LLFSAT+  ++  +   F+ +P       P++   T++H    +  + ++S   ++  +
Sbjct: 197 RLLFSATLDGDVDALVRRFMTDPVTHSTAPPTAAVTTMDHHLLLIPPHDKFSVVASIAAR 256

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             ++       ++F   +  V  L   L   G     +HG   QR R + L+ F+EG + 
Sbjct: 257 EGRT-------MVFARTQLGVDRLVQQLAAVGVRAGGLHGGKTQRMRTRTLAEFREGRMN 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++VA+D+AARG+ +  V  V + D P   ++Y+HR GRT RAG  G   TL 
Sbjct: 310 VLVATDVAARGIHVDGVSLVLHVDPPKDPKDYLHRAGRTARAGEAGAVATLA 361


>gi|332534400|ref|ZP_08410240.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036134|gb|EGI72609.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 462

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 134/367 (36%), Positives = 216/367 (58%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L   +V  +   GY   TP+Q +++P VL   D+   A+TG+GKTA+F L +L  
Sbjct: 6   FSSLALPAGLVDNLSTLGYAHMTPVQAQSLPPVLAGKDIIAQAKTGSGKTAAFSLGVLAK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R R++   +L+L PTRELA QVA    K  +  +N+ +  L GG+    Q   LE 
Sbjct: 66  LNVKRFRIQ---SLVLCPTRELAEQVAVEMRKLARGIHNIKILTLCGGVSIGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  +G L ++++E LV+DEAD+MLDMGF   +  I   +P  RQTL
Sbjct: 123 GAHIIVGTPGRVDDHIRKGTLRLDDVETLVLDEADQMLDMGFQDTLDAIIERIPQNRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++ +++  L+NP+ ++V    + + TI+  F       +K+     +LL  
Sbjct: 183 LFSATFPRAIEAIAKRVLKNPEMVKVEEEQAKS-TIKQYFYKM--DNNKQRYPTLKLLLL 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T ++ ++FCN K     +C  L  +GFS  A+HG+++QR R + L +F   +  ++VA
Sbjct: 240 KFTPQSCVVFCNTKVETQQVCDDLADEGFSAVALHGDLEQRDRERTLIHFSNKSASILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V N+ + +  + ++HR+GRTGRAG+ G A ++  + +   I  I 
Sbjct: 300 TDVAARGLDIDDMDMVINYHLAHDTQTHVHRVGRTGRAGKKGIACSIYGEAEAFKIAQIG 359

Query: 362 KLIEKKV 368
              E+ +
Sbjct: 360 DHYERDI 366


>gi|195111735|ref|XP_002000433.1| GI10230 [Drosophila mojavensis]
 gi|193917027|gb|EDW15894.1| GI10230 [Drosophila mojavensis]
          Length = 801

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 151/388 (38%), Positives = 219/388 (56%), Gaps = 25/388 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ L+  +   V  A Y KPTP+Q   IP+++   D+   AQTG+GKTA+F++P+L  
Sbjct: 292 FDDVQLTEIIRNNVNLARYDKPTPVQKYAIPIIISGRDLMACAQTGSGKTAAFLVPILNQ 351

Query: 62  ILEKGRA-----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           + E G +           R + P  L+L PTRELA Q+ +  +K+     +  A+L GG 
Sbjct: 352 MYELGLSAPPQSNRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGN 411

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L+RG  +++ TPGR+ D   RGK+ + NI  LV+DEADRMLDMGF P I+ I
Sbjct: 412 NTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRI 471

Query: 171 TSLV--PFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
              +  P T  RQTL+FSAT   ++Q+++ +FL N   + V    ST+E I    +  Y 
Sbjct: 472 VEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYD 531

Query: 227 QYSKKCALLQQLLQSQDTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
           Q  K+  LL  L   +D  +       +IF   KK   +L   L +    V +IHG+  Q
Sbjct: 532 Q-DKRSYLLDLLSSIRDGPEYSKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQ 590

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           + R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P   E Y+HRIGRTGR G 
Sbjct: 591 KEREEALRCFRSGDCPILVATAVAARGLDIPHVTHVINFDLPTDVEEYVHRIGRTGRMGN 650

Query: 342 HGKAFTLVAKEDIKHI--DAIEKLIEKK 367
            G A +    ++ ++I  D +E LIE K
Sbjct: 651 LGVATSFFNDKN-RNICSDLLELLIETK 677


>gi|307110010|gb|EFN58247.1| hypothetical protein CHLNCDRAFT_30080 [Chlorella variabilis]
          Length = 551

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 207/373 (55%), Gaps = 15/373 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +      V+  +  AG+ +P+PIQ +  P+ L   D+ GIA+TG+GKT +++LP + 
Sbjct: 129 NFEEASFPEYVLAEIQRAGFTEPSPIQAQGWPMALLGRDLVGIAETGSGKTLAYLLPGVV 188

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +    A+  +     P  L L PTRELA Q+ +   ++G    +    + GG P   Q 
Sbjct: 189 HIN---AQAHLSPGDGPIVLCLAPTRELAVQIQNECARFGSTSRIKSTCVYGGAPKGPQA 245

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L RG +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 246 NDLRRGVEIVIATPGRLIDFLESRTTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRP 305

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE---TIEHCFVATYAQYSKKCA 233
            RQTLL+SAT   E+Q ++  FL NP ++ + +P   A    T    F A + +Y K   
Sbjct: 306 DRQTLLWSATWPKEIQTLAREFLNNPYQVLIGSPDLKANHRITQIFDFPAEHEKYQK--- 362

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L ++L+ +   +  +IF   KK    +   L   G+   +IHG+  Q  R  +L+ FK 
Sbjct: 363 -LVRVLEKEMDGRRILIFLETKKGCDAVTRQLRMDGWPALSIHGDKSQHERDWVLAEFKA 421

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +M+A+D+AARGLD+ D+  V N+D+P+ AE+Y+HRIGRTGRAG  G A++     +
Sbjct: 422 GKHPIMIATDVAARGLDVKDIKMVINYDMPSCAEDYVHRIGRTGRAGASGAAYSFFTAAN 481

Query: 354 IKHIDAIEKLIEK 366
            +    + +++E+
Sbjct: 482 GRMARQLVQILEE 494


>gi|114794629|pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
           Trapped Dead-Box Helicase Bound To Rna
 gi|114794633|pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
           Trapped Dead-Box Helicase Bound To Rna
 gi|217035449|pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
 gi|217035453|pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
          Length = 413

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 209/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 40  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 100 LD---IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 157 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 217 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 275

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 276 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 331

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 332 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 391

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 392 IEQYYSTQIDEMPMNVADL 410


>gi|40788956|dbj|BAA04879.2| KIAA0111 [Homo sapiens]
          Length = 412

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 209/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 41  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 101 LD---IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 157

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 158 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 217

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 218 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 276

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 277 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 332

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 333 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 392

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 393 IEQYYSTQIDEMPMNVADL 411


>gi|209808970|ref|YP_002264508.1| ATP-dependent RNA helicase DbpA [Aliivibrio salmonicida LFI1238]
 gi|208010532|emb|CAQ80900.1| ATP-independent RNA helicase (DEAD/DEAH box helicase) [Aliivibrio
           salmonicida LFI1238]
          Length = 462

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 134/360 (37%), Positives = 205/360 (56%), Gaps = 7/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P ++  +   GY + TPIQ +++P +L+  DV    +TG+GKTA+F L +L  
Sbjct: 6   FSSLNLNPYLLQNLDTLGYTEMTPIQAQSLPFMLEGKDVIAQGKTGSGKTAAFGLGLLAN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L+  R RV+   +L+L PTRELA QVA    K  ++ +N+ V  L GG+PF  Q   LE 
Sbjct: 66  LDVKRFRVQ---SLVLCPTRELADQVAVEIRKLARSIHNIKVLTLCGGVPFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ +H  +G L ++N+   V+DEADRML+MGF   I  +    P  RQ L
Sbjct: 123 GAHIIVGTPGRVEEHLRKGYLNLDNLNTFVLDEADRMLEMGFQDAIDLVLDHAPAKRQNL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   +++ +++  + NP   +           +H +      +  +   LQ LL  
Sbjct: 183 LFSATFPPQIKSIADRIMNNPIMTKAEDKIEETSITQHFY--KVDDFEDRLKALQILLLK 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ +IFCN K+    +   L    FSV A+HG+++QR R K L  F   +  ++VA
Sbjct: 241 HRP-ESTVIFCNTKRVTQEVADELRHFDFSVTALHGDLEQRDRDKALVRFANKSTSILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V NF++    E ++HRIGRTGRAG+ G A +L   ++      IE
Sbjct: 300 TDVAARGLDIDSLDAVINFELSRDPEVHVHRIGRTGRAGKKGIALSLFNNKETNSFAQIE 359


>gi|89891113|ref|ZP_01202621.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Flavobacteria
           bacterium BBFL7]
 gi|89516757|gb|EAS19416.1| ATP-dependent RNA  helicase, DEAD/DEAH box family [Flavobacteria
           bacterium BBFL7]
          Length = 449

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 204/369 (55%), Gaps = 6/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L L   +   + D G+   TPIQ +  P++L   D+ GIAQTGTGKT  ++LP+L 
Sbjct: 3   NFEELNLGTPLRNGLNDLGFTTMTPIQEQAFPVILSGRDMIGIAQTGTGKTLGYMLPLLH 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+   A    PR L+L PTREL  QV +  E Y    N+ V  + GG     Q K +  
Sbjct: 63  ELK--YAETLDPRILVLVPTRELVVQVVEQIEAYAAYINIRVLGVYGGTNINTQKKAVTD 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR+ D      + +   + +VIDE D MLD+GF   + NI   +P  RQ +
Sbjct: 121 GVDIIVATPGRLYDLIVAQTVRLKYCKKIVIDEVDVMLDLGFRFQLTNIFDHLPKKRQNI 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240
           +FSATMTD+++   +++  NP+++ V    +  E IE  C+      +  K  LL  LL 
Sbjct: 181 MFSATMTDQIEDFIKSYFFNPEKVSVAVSGTRLENIEQTCYPV--ENFYTKANLLMDLLT 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLC-HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +  K  ++F   KK+   L  + LE+ G  +  IH N  Q  R++ +  F  G  +++
Sbjct: 239 DVEEFKKVLVFVGNKKSADRLQDYMLERYGDEIAVIHSNKTQNYRLRSIELFDTGERRIL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+ ARGLD+  + HV N DVP+  ENY+HRIGR+GRA   GK      +++ +   A
Sbjct: 299 IATDVMARGLDLEKISHVINIDVPSFPENYMHRIGRSGRAEEKGKTILFYTEKEKEDKIA 358

Query: 360 IEKLIEKKV 368
           IE L++ K+
Sbjct: 359 IEALMDYKI 367


>gi|302654026|ref|XP_003018826.1| hypothetical protein TRV_07145 [Trichophyton verrucosum HKI 0517]
 gi|291182505|gb|EFE38181.1| hypothetical protein TRV_07145 [Trichophyton verrucosum HKI 0517]
          Length = 814

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 136/357 (38%), Positives = 201/357 (56%), Gaps = 3/357 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L  
Sbjct: 299 FQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIVPILER 358

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++ 
Sbjct: 359 LLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKR 418

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 419 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKSRQTM 478

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMT+ + K+    L  P R+ V++   T  T+   FV     +  K+   L  L +
Sbjct: 479 LFSATMTNSVDKLIRVGLNKPVRLMVDSKKQTVGTLVQEFVRLRPGREDKRLGYLMFLCK 538

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  T +  I+F  QKK    +       G     +HG++ Q  R+K + +F++  +  ++
Sbjct: 539 TVYTNRV-IVFFRQKKEAHRVRIVFGLMGLKAAELHGSMSQEQRIKSVEDFRDAKVSYLL 597

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K +
Sbjct: 598 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVV 654


>gi|60652753|gb|AAX29071.1| DEAD box polypeptide 48 [synthetic construct]
          Length = 412

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 209/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 40  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 100 LD---IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 157 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 217 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 275

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 276 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 331

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 332 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 391

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 392 IEQYYSTQIDEMPMNVADL 410


>gi|73996622|ref|XP_863146.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 8 [Canis familiaris]
          Length = 804

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 141/400 (35%), Positives = 215/400 (53%), Gaps = 45/400 (11%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL------EKGRARVRMPRTLILE 79
           P  ++ IP+ LQ  D+ G+A+TG+GKTA+F++P+L  +      ++     + P  +IL 
Sbjct: 400 PHILEAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILA 459

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA Q+ +   K+GK   +    +IGGI  E Q  +L  G +++I TPGR++D    
Sbjct: 460 PTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLEN 519

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT---------------------- 177
             L+++    +V+DEADRM+DMGF P +Q I   +P +                      
Sbjct: 520 RYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESG 579

Query: 178 ----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232
               RQT++F+ATM   +++++ ++L+ P  + + +     E +E   F+ + ++  KK 
Sbjct: 580 KHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKL 639

Query: 233 -ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
            A+L+Q           IIF NQKK    L  SLEK G++ C +HG   Q  R   LSN 
Sbjct: 640 LAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNL 694

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHRIGRTGRAG+ G A T + K
Sbjct: 695 KAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTK 754

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
           ED      +++ I      L   +SS  P L     AQH 
Sbjct: 755 EDSAVFYELKQAI------LESPVSSCPPELANHPDAQHK 788


>gi|74142079|dbj|BAE41100.1| unnamed protein product [Mus musculus]
          Length = 411

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 209/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 40  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQC 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 100 LD---IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 157 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKELIYDVYRYLPPATQVVL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 217 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 275

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 276 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 331

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 332 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 391

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 392 IEQYYSTQIDEMPMNVADL 410


>gi|58266632|ref|XP_570472.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134110998|ref|XP_775963.1| hypothetical protein CNBD3700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74685735|sp|Q5KIK3|DRS1_CRYNE RecName: Full=ATP-dependent RNA helicase DRS1
 gi|50258629|gb|EAL21316.1| hypothetical protein CNBD3700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226705|gb|AAW43165.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 808

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 208/369 (56%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  ++ A+    +  PTPIQ + IPL L   D+ G A TG+GKTA+F++P+L  
Sbjct: 224 FTAMNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPILER 283

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV--ALLIGGIPFEAQNK 117
           L   ++G+      R L+L PTRELA Q     +   +   L V  ALL+GG+   AQ  
Sbjct: 284 LCYRDRGKGGAAC-RVLVLCPTRELAVQCEAVGKALAEKGGLDVRFALLVGGLSLNAQAH 342

Query: 118 KLERGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            L    D+LI TPGR++DH  N     ++ +++LVIDEADRML+ GF   ++ I    P 
Sbjct: 343 TLRTLPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEAGFTDELEEIIKACPR 402

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           +RQT+LFSATMTD + ++ +  L  P R+ V+   +TA  +   FV   +  S+  +LL 
Sbjct: 403 SRQTMLFSATMTDSVDELVKLSLDKPIRVFVDPKRNTARGLTQEFVRIRSDDSRSPSLLA 462

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L  +   +  IIF   K     +       G     +HGN+ Q  R++ L++FK GT+
Sbjct: 463 --LCKRTIREKCIIFFRSKALAHQMRIVFGLFGLKAAELHGNLTQEQRLQALNDFKAGTV 520

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             ++A+DLA+RGLDI  V  V N+D+P +   Y HR+GRT RAGR G++ +LV + D K 
Sbjct: 521 DYLLATDLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSVSLVGEADRKM 580

Query: 357 IDAIEKLIE 365
           + A  K  E
Sbjct: 581 LKAAIKQAE 589


>gi|153832565|ref|ZP_01985232.1| DNA and RNA helicase [Vibrio harveyi HY01]
 gi|148871131|gb|EDL70009.1| DNA and RNA helicase [Vibrio harveyi HY01]
          Length = 412

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 207/368 (56%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS +++ A L   + KPT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 1   MPFSTLSLSSELIHA-LPKDFKKPTDIQALAIPELLSGKDVLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +    + LIL PTRELA QV++   + G++  L    L GG+  E Q + L 
Sbjct: 60  EKLSVNPEQ----KALILVPTRELAIQVSEAINQVGQSIGLNAVCLCGGVDKETQLQALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ T GR++D  N G L ++NI  LV+DEADR+LDMGF P +QNI       RQT
Sbjct: 116 ANPQILVATTGRLVDLANNG-LELSNIHYLVLDEADRLLDMGFWPDVQNIAGQTSNQRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT +DEL+  ++  +  PK++  +  +ST + I         + SK  AL++  L 
Sbjct: 175 AMFSATFSDELKGKAKQLMHAPKQVAAHQENSTNQDIAETLYLVN-KGSKTKALIE--LI 231

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+     ++F   K+N   L   L K G +   +HGN  Q  R + L+ FK G  Q+++
Sbjct: 232 KQNVWAQVLVFIGAKENADGLAKKLNKAGITTNVLHGNKSQAEREEALAQFKSGQTQVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG  G   +LV   + + + AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVVISLVCHGEAEALSAI 351

Query: 361 EKLIEKKV 368
             L ++++
Sbjct: 352 RNLTQREL 359


>gi|324021225|gb|EGB90444.1| DEAD/DEAH box helicase [Escherichia coli MS 117-3]
          Length = 432

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 135/360 (37%), Positives = 210/360 (58%), Gaps = 8/360 (2%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84
           TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   A +   + L+L PTREL
Sbjct: 2   TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID---ASLFQTQALVLCPTREL 58

Query: 85  AAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           A QVA    +  +   N  +  L GG PF  Q   L+    +++ TPGR+LDH  +G + 
Sbjct: 59  ADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVS 118

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT  + +  +S    ++P 
Sbjct: 119 LDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPL 178

Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
            IE+++ +     IE  F  T ++   K  LLQ+LL S     + ++FCN KK+   +C 
Sbjct: 179 AIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPSSCVVFCNTKKDCQAVCD 234

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
           +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V NF++ 
Sbjct: 235 ALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELA 294

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
              E ++HRIGRT RAG  G A +  A E+ +  + I  +++ K++W     +S   PLE
Sbjct: 295 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSILPLE 354


>gi|331657397|ref|ZP_08358359.1| ATP-independent RNA helicase DbpA [Escherichia coli TA206]
 gi|331055645|gb|EGI27654.1| ATP-independent RNA helicase DbpA [Escherichia coli TA206]
          Length = 457

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 137/377 (36%), Positives = 217/377 (57%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  T +Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTSVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
             +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  VSLFQTQGLVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+  ++C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
           K++W     +S   PLE
Sbjct: 363 KLNWQTPPANSSIVPLE 379


>gi|311276168|ref|XP_003135076.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Sus
           scrofa]
          Length = 646

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 219/392 (55%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 166 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 225

Query: 63  L-------------EKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
           +             E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 226 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 285

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 286 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 345

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 346 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 404

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + S K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 405 -WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 463

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 464 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 523

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +     D ++ L+E K +   WL
Sbjct: 524 LATSFFNERNANITKDLLDLLVEAKQEVPSWL 555


>gi|148230348|ref|NP_001079703.1| similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA
           helicase, 68kDa) [Xenopus laevis]
 gi|28838521|gb|AAH47981.1| MGC53795 protein [Xenopus laevis]
          Length = 607

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 134/386 (34%), Positives = 211/386 (54%), Gaps = 13/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PTPIQ +  P+ L   D+ G+A TG+GKT S++LP +
Sbjct: 90  LNFHEASFPANVMEVIKRLNFTEPTPIQGQGWPVALSGLDMVGVAMTGSGKTLSYLLPGI 149

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   L++G      P  L+L PTRELA QV     +YG+   L    + GG P   
Sbjct: 150 VHINHQPFLQRGDG----PILLVLAPTRELAQQVQQVAAEYGRACRLRTTCIYGGAPKGP 205

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +N    LV+DEADRMLDMGF P I+ I   +
Sbjct: 206 QIRDLERGVEICIATPGRLIDFLEAGKTNLNRCTYLVLDEADRMLDMGFEPQIRKIVDQI 265

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL+    I +     S+    ++   V    +   K 
Sbjct: 266 RPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCNDGEKDDKL 325

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+   +L   L + G+    IHG+  Q+ R  +L+ FK
Sbjct: 326 VRLMEEIMSEKENKT-IVFVETKRRCDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFK 384

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 385 HGKSPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSSKTGTAYTFFTPG 444

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           +IK ++ +  ++ +    +N  L  L
Sbjct: 445 NIKQVNDLVSVLREANQAINPKLLQL 470


>gi|57113867|ref|NP_001008986.1| ATP-dependent RNA helicase DDX3Y [Pan troglodytes]
 gi|51315848|sp|Q6GVM6|DDX3Y_PANTR RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName: Full=DEAD
           box protein 3, Y-chromosomal
 gi|48728366|gb|AAT46349.1| DDX3Y [Pan troglodytes]
          Length = 660

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 141/393 (35%), Positives = 220/393 (55%), Gaps = 25/393 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ +   ++  +    Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+
Sbjct: 179 NFGDIDMGEIIMGNIQLTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILS 238

Query: 62  -------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 239 QIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 298

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 299 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 358

Query: 167 IQNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 359 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 418

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             + +   K + L  +L +  T    ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 419 --WVEDLDKRSFLLDILGAAGTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 476

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 477 DREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNL 536

Query: 343 GKAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
           G A +   +++I    D ++ L+E K +   WL
Sbjct: 537 GLATSFFNEKNINITKDLLDLLVEAKQEVPSWL 569


>gi|198470027|ref|XP_001355197.2| GA19457 [Drosophila pseudoobscura pseudoobscura]
 gi|198147147|gb|EAL32254.2| GA19457 [Drosophila pseudoobscura pseudoobscura]
          Length = 1243

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 129/363 (35%), Positives = 208/363 (57%), Gaps = 15/363 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 539 WAQCGVSKKEMDVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRH 598

Query: 63  ------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L++G   +     +I+ PTREL  Q+  +  ++ K+  L    + GG     Q 
Sbjct: 599 ILDQPNLDEGDGAI----AIIMAPTRELCMQIGKDIRRFSKSLGLRPVCVYGGTGISEQI 654

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RG+++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 655 AELKRGSEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDN 714

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           V   RQT++FSAT   +++ ++   L+ P  + V   S   + +E   V      SK   
Sbjct: 715 VRPDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKDVEQ-HVVILNDESKFFK 773

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL+ LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +FK 
Sbjct: 774 LLE-LLGIYQEAGSIIVFADKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKS 832

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  E 
Sbjct: 833 GKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQ 892

Query: 354 IKH 356
            ++
Sbjct: 893 SRY 895


>gi|238789022|ref|ZP_04632811.1| ATP-independent RNA helicase dbpA [Yersinia frederiksenii ATCC
           33641]
 gi|238722786|gb|EEQ14437.1| ATP-independent RNA helicase dbpA [Yersinia frederiksenii ATCC
           33641]
          Length = 460

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 214/369 (57%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L  
Sbjct: 6   FSSLTLPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLDK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           +  G     + + LIL PTRELA QV+    +  +   N+ +  L GG P   Q   L  
Sbjct: 66  IAVGEF---VTQALILCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI +H  +  L++++++ILV+DEADRMLDMGF   I ++ +  P  RQTL
Sbjct: 123 APHIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S    + P  +EV         IE  F  T  +  K+  LL  +L S
Sbjct: 183 LFSATYPVGIERISARVQRQPVNVEVED-GDEEPAIEQVFFETTRE--KRLPLLIAVL-S 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + ++FCN KK+  ++  +LE +G SV A+HG+++QR R ++L  F   + +++VA
Sbjct: 239 HYQPASCVVFCNTKKDCQSVFEALESRGISVLALHGDLEQRDRDQVLVRFSNRSCRVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V NF++    E ++HRIGRTGRAG  G A +L   +++    AIE
Sbjct: 299 TDVAARGLDIKDLALVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMARAHAIE 358

Query: 362 KLIEKKVDW 370
             ++ K+ W
Sbjct: 359 DYLQIKLKW 367


>gi|169609619|ref|XP_001798228.1| hypothetical protein SNOG_07902 [Phaeosphaeria nodorum SN15]
 gi|143462316|sp|Q0UK12|RRP3_PHANO RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|160701880|gb|EAT84178.2| hypothetical protein SNOG_07902 [Phaeosphaeria nodorum SN15]
          Length = 546

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 136/370 (36%), Positives = 212/370 (57%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FADLG+  ++  A  + GY   TPIQ ++IPL L   D+ G+A+TG+GKTA+FVLP+L  
Sbjct: 117 FADLGVREELCDACENLGYKTATPIQTESIPLALAGKDIIGLAETGSGKTAAFVLPILQA 176

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+K +A       LI+ PTRELA Q++   +  G   N+  A L+GG+    Q   L +
Sbjct: 177 LLDKPQAYF----GLIMAPTRELAYQISQQVDALGSIINVKCATLVGGMDMVPQAIALSK 232

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQ 179
              +++ +PGR+LDH    K   + +++ LV+DEADR+LD+ F   +  I  ++P   R 
Sbjct: 233 RPHIIVASPGRLLDHLENTKGFSLKHLKYLVLDEADRLLDLDFGDSLDKIFKVLPRDDRH 292

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM+ +++ +    L+NP R+ +   SS++  +    + +Y     K   L  + 
Sbjct: 293 TYLFSATMSSKVESLQRAALKNPVRVSI---SSSSHQVVSTLLQSYMLIPHKYKDLYLIH 349

Query: 240 QSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              D + +  I+F         L   L   GF    +HG + Q +R+  L+ FK     +
Sbjct: 350 LLNDNIGHATILFTRTVNETQRLAVLLRTLGFQALPLHGQLSQSNRLGALNKFKAKARDI 409

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIP V  V NFD+P+ +E Y+HR+GRT RAG+ GKA + V + D++   
Sbjct: 410 LVATDVAARGLDIPSVDLVVNFDLPHDSETYVHRVGRTARAGKSGKAVSFVTQYDLEIFQ 469

Query: 359 AIEKLIEKKV 368
            IE  + K+V
Sbjct: 470 RIEHALGKQV 479


>gi|148226262|ref|NP_001080283.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Xenopus laevis]
 gi|27924277|gb|AAH44972.1| Pl10-prov protein [Xenopus laevis]
          Length = 697

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 219/392 (55%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ +   ++  +    Y +PTP+Q   IP+++ + D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 223 FQDVDMGEIIMGNIQLTRYTRPTPVQKHAIPIIIGKRDLMACAQTGSGKTAAFLLPILSQ 282

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + + GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 283 IYADGPGDAMKHLKDNGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVY 342

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 343 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 402

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   RQT++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 403 RRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVV- 461

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + +   K + L  LL +       ++F   KK    L   L  +G++  +IHG+  QR 
Sbjct: 462 -WVEEMDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRD 520

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 521 REEALHQFRSGKCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 580

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   +++I    D ++ L+E K +   WL
Sbjct: 581 LATSFFNEKNINITKDLLDLLVEAKQEVPSWL 612


>gi|170578338|ref|XP_001894368.1| ATP-dependent helicase DDX48 [Brugia malayi]
 gi|158599081|gb|EDP36794.1| ATP-dependent helicase DDX48, putative [Brugia malayi]
          Length = 399

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 134/370 (36%), Positives = 206/370 (55%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   G+ KP+ IQ + I  +++  DV   AQ+GTGKTA+F + +L  
Sbjct: 33  FDSMGLGEELLRGIYSYGFEKPSAIQQRAIKQIVKGRDVIAQAQSGTGKTATFSIAVLQS 92

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     +R  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 93  LD---ISLRETQALILSPTRELAVQIQKVVLALGDYLNVQCHACIGGTNVGEDIRKLDYG 149

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++LV+DEAD ML+ GF   + +I   +P   Q +L
Sbjct: 150 QHVVSGTPGRVFDMIRRRNLRTRSIKMLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVL 209

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT---YAQYSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA      ++   C L   L 
Sbjct: 210 LSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLCDLYDTL- 268

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   L++  F+V ++HG ++Q+ R  I+  F+ G  +L+
Sbjct: 269 ----TITQAVIFCNTRRKVDWLAEKLKEANFTVSSMHGEMEQKERDAIMKEFRGGASRLL 324

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLDIP V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 325 ISTDVFARGLDIPQVSLVVNYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRD 384

Query: 360 IEKLIEKKVD 369
           IE+    ++D
Sbjct: 385 IEQYYATQID 394


>gi|312218576|emb|CBX98521.1| hypothetical protein [Leptosphaeria maculans]
          Length = 679

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 135/345 (39%), Positives = 199/345 (57%), Gaps = 21/345 (6%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--------------ILE 64
           +GY  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L                  
Sbjct: 211 SGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQNFVNGPSPPPQSQAGG 270

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
            GR R   P +L+L PTREL +Q+ +   K+     +   ++ GG    +Q +++ERG D
Sbjct: 271 YGRQRKAYPTSLVLAPTRELVSQIFEEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 330

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--VPFT--RQT 180
           +L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P I+ I     +P T  RQT
Sbjct: 331 LLVATPGRLVDLIERGRISLANIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPTAARQT 390

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT   ++Q ++ +FL+    + V    ST+E I       Y + + K ++L  +L 
Sbjct: 391 LMFSATFPRDIQMLARDFLKEYIFLSVGRVGSTSENITQK--VEYVEDADKRSVLLDILH 448

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       +IF   K+   +L   L  QGF   +IHG+  QR R K L  F+ G   ++V
Sbjct: 449 THGAGLT-LIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRNGRCPILV 507

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           A+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G A
Sbjct: 508 ATAVAARGLDIPNVKHVVNYDLPTDIDDYVHRIGRTGRAGNTGIA 552


>gi|218890286|ref|YP_002439150.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
 gi|218770509|emb|CAW26274.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
          Length = 446

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 138/371 (37%), Positives = 210/371 (56%), Gaps = 3/371 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ A+    + +PTP+Q   IP  L+ HD+   AQTG+GKTA+F+LP+L  
Sbjct: 7   FSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFLLPLLHR 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L        + R LIL PTRELA Q     E++ +   +   L+ GG  F+ Q  +L + 
Sbjct: 67  LLAEDKPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRKN 126

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +++I TPGR+L+  N G L + +IE+LV+DEADRMLDMGF   +  + +  P  RQTLL
Sbjct: 127 PEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAERQTLL 186

Query: 183 FSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT +   L KV    L+ P+ + +N     +E +    V T    + K  LLQ LL S
Sbjct: 187 FSATHSGAGLNKVIAEVLREPQVLRLNQVGELSENVRQQ-VITADDVAHKEQLLQWLL-S 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +T    I+F N + +   L   L      V  +HG  DQ+ R   +   K+G ++++VA
Sbjct: 245 NETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKILVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + ++E
Sbjct: 305 TDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDWNLMSSVE 364

Query: 362 KLIEKKVDWLN 372
           + +++  +  N
Sbjct: 365 RYLKQNFERRN 375


>gi|160900768|ref|YP_001566350.1| DEAD/DEAH box helicase domain-containing protein [Delftia
           acidovorans SPH-1]
 gi|160366352|gb|ABX37965.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
          Length = 707

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 142/409 (34%), Positives = 225/409 (55%), Gaps = 54/409 (13%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGI-----AQTGTGKTASFVL 57
           F +LGL+ ++V AV D GY +PT +Q + IPL +   D   I     +QTG+GKTA+F+L
Sbjct: 90  FIELGLAEELVRAVADLGYTQPTAVQAQAIPLAMGSDDQAFIDLMVSSQTGSGKTAAFLL 149

Query: 58  PMLTILEKGRA---------------------------------------RVRMPRTLIL 78
           P+L  L + +A                                       +  +P  LIL
Sbjct: 150 PVLHTLIQQKADEEAAIRAEYDRQCAEATASGQPTPKRNKRKDPTNPRNFKAAVPGALIL 209

Query: 79  EPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
            PTRELA QVA D  E       + +A ++GG+P++ Q  KL+  A++++ TPGR+LD  
Sbjct: 210 CPTRELAQQVAHDAIELVKHCRGIRIANVVGGMPYQLQIAKLQ-NANLVVATPGRLLDLQ 268

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
              ++ ++ ++ LV+DEADRMLD+GF   +  +  L    +QT++FSAT    +Q+++  
Sbjct: 269 RSMQIKLDQVQFLVVDEADRMLDLGFSDDLAEVNDLTAQRKQTMMFSATFAPRIQQLAMR 328

Query: 198 FLQNP----KRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
            + +     K++ ++TP     +I+   F A  +Q+ +K  LL   L+   T+   I+F 
Sbjct: 329 VMHDGGSGVKKVTIDTPQEKHASIKQVLFWADNSQHKRK--LLDHWLRDT-TINQAIVFA 385

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
           + +     L + L++ GFS  A+HG + Q  R + L   + G +Q++VA+D+AARG+D+P
Sbjct: 386 STQVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRSGQVQVLVATDVAARGIDVP 445

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
            + HVFN+ +P +AE+Y HRIGRTGRAGR G A T     D + I  IE
Sbjct: 446 TITHVFNYGLPMKAEDYTHRIGRTGRAGREGVAVTFAEFRDRRRIFDIE 494


>gi|126668612|ref|ZP_01739565.1| ATP-dependent RNA helicase, specific for 23S rRNA [Marinobacter sp.
           ELB17]
 gi|126626942|gb|EAZ97586.1| ATP-dependent RNA helicase, specific for 23S rRNA [Marinobacter sp.
           ELB17]
          Length = 457

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 138/373 (36%), Positives = 208/373 (55%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL LS  +   ++  G+ +PT IQ + +P  L   DV  +A TG+GKTA+F + ++  
Sbjct: 4   FKDLELSAAMQANLVRLGFTEPTDIQTRALPHCLAGQDVIALAHTGSGKTAAFGIGLIEH 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +  V+   +L+L PTRELA QVA    +  +   N+ +  L GG+    Q   L  
Sbjct: 64  VKPKQFSVQ---SLVLCPTRELADQVAKALRELARARDNIKILTLCGGVSIGPQIGSLAH 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI DH  +G L ++ +  +V+DEADRMLDMGF   ++NI S  P  RQTL
Sbjct: 121 GAHIVVGTPGRIADHLQKGTLKLDRVHTVVLDEADRMLDMGFQEAVENILSHAPAQRQTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + ++K+S  F + P  +   T    ++  E  +  +  Q ++  A++  L Q 
Sbjct: 181 LFSATWPESIRKLSAGFQREPVDVRAQTEKMNSDIAEVFYEISGNQRTR--AIVALLSQH 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q T  + ++FC  K     L   L +QGFS  A+HG+++QR R  +L  F   + Q++VA
Sbjct: 239 QPT--SCLVFCAMKHQCDELAAELSQQGFSALALHGDLEQRDRDSVLVRFANQSCQVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N +     E + HRIGRTGRAG  G A TL +      I+ +E
Sbjct: 297 TDVAARGLDIKSLPLVVNAEPAGDPEIHTHRIGRTGRAGEQGLAVTLCSPSQGHKINRLE 356

Query: 362 KLIEKKVDWLNGD 374
                 V W + D
Sbjct: 357 SERGATVIWGDSD 369


>gi|312081503|ref|XP_003143055.1| ATP-dependent helicase DDX48 [Loa loa]
 gi|307761780|gb|EFO21014.1| ATP-dependent helicase DDX48 [Loa loa]
          Length = 399

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 134/370 (36%), Positives = 206/370 (55%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   G+ KP+ IQ + I  +++  DV   AQ+GTGKTA+F + +L  
Sbjct: 33  FDSMGLGEELLRGIYSYGFEKPSAIQQRAIKQIVKGRDVIAQAQSGTGKTATFSIAVLQS 92

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     +R  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 93  LD---ISLRETQALILSPTRELAVQIQKVVLALGDYLNVQCHACIGGTNVGEDIRKLDYG 149

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++LV+DEAD ML+ GF   + +I   +P   Q +L
Sbjct: 150 QHVVSGTPGRVFDMIRRRNLRTRSIKMLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVL 209

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT---YAQYSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA      ++   C L   L 
Sbjct: 210 LSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLCDLYDTL- 268

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   L++  F+V ++HG ++Q+ R  I+  F+ G  +L+
Sbjct: 269 ----TITQAVIFCNTRRKVDWLAEKLKEANFTVSSMHGEMEQKERDAIMKEFRGGASRLL 324

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLDIP V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 325 ISTDVFARGLDIPQVSLVVNYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRD 384

Query: 360 IEKLIEKKVD 369
           IE+    ++D
Sbjct: 385 IEQYYATQID 394


>gi|302499800|ref|XP_003011895.1| hypothetical protein ARB_01875 [Arthroderma benhamiae CBS 112371]
 gi|291175449|gb|EFE31255.1| hypothetical protein ARB_01875 [Arthroderma benhamiae CBS 112371]
          Length = 814

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 136/357 (38%), Positives = 201/357 (56%), Gaps = 3/357 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L  
Sbjct: 299 FQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIVPILER 358

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++ 
Sbjct: 359 LLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKR 418

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 419 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKSRQTM 478

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMT+ + K+    L  P R+ V++   T  T+   FV     +  K+   L  L +
Sbjct: 479 LFSATMTNSVDKLIRVGLNKPVRLMVDSKKQTVGTLVQEFVRLRPGREDKRLGYLMFLCK 538

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  T +  I+F  QKK    +       G     +HG++ Q  R+K + +F++  +  ++
Sbjct: 539 TVYTNRV-IVFFRQKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVEDFRDAKVSYLL 597

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K +
Sbjct: 598 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVV 654


>gi|282853714|ref|ZP_06263051.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
 gi|282583167|gb|EFB88547.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
          Length = 494

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 140/383 (36%), Positives = 209/383 (54%), Gaps = 28/383 (7%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML------------TILEKGR 67
           G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L             +  KG+
Sbjct: 5   GIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILLRITLPGDEGWEELTTKGK 64

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
                P+ L++ PTRELA QV+ +           V  + GG+ +E+Q   L+ G DV++
Sbjct: 65  -----PQALVMCPTRELALQVSKDISTAASVRGARVLTVYGGVGYESQIDALKAGVDVVV 119

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+LD   R  L ++++ I+V+DEAD MLD+GF+P ++N+    P +RQT+LFSATM
Sbjct: 120 GTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFSATM 179

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
              +  ++ + L  P  +      + A   +       A    K  ++ ++LQ+ D  K 
Sbjct: 180 PAPIMALARSQLHRPVHVRAEGADTQATVPDTQQFVYQAHPLDKIEIIGRILQANDVEKV 239

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+ G   ++VA+D+AAR
Sbjct: 240 -IIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGDATILVATDVAAR 298

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           G+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   D+       KLI K 
Sbjct: 299 GIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGVAVTLVDWADVTRW----KLINKA 354

Query: 368 VDWLNGDLSSLNPPLEKIDIAQH 390
              LN +LS    P+E    + H
Sbjct: 355 ---LNLELSE---PVETYSTSPH 371


>gi|227504305|ref|ZP_03934354.1| possible ATP-dependent RNA helicase [Corynebacterium striatum ATCC
           6940]
 gi|227198953|gb|EEI79001.1| possible ATP-dependent RNA helicase [Corynebacterium striatum ATCC
           6940]
          Length = 463

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 146/424 (34%), Positives = 220/424 (51%), Gaps = 17/424 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL  ++V  +   G  +P PIQ   IP  L   DV G   TG+GKT +F LP+LT 
Sbjct: 4   FADLGLPQEIVRVLNKQGITEPFPIQQAAIPDALAGKDVLGRGPTGSGKTFTFGLPILTR 63

Query: 63  L-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   G ++   PR L+L PTRELA Q+ D  ++      L V  ++GG+      + L R
Sbjct: 64  LTHTGASKPARPRALVLTPTRELATQIHDRLDEPANALGLRVLSVVGGVNINHHIRSLAR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+L+ TPGR  D  N+GKL ++++ I  +DEAD M DMGF+P ++ + +L P   Q L
Sbjct: 124 PVDLLVATPGRAQDLINQGKLSLDDVAITALDEADHMADMGFLPQVRKLMALTPKKGQRL 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ K+ + F+ +P         +  +T+ H  V    + S+   +++   + 
Sbjct: 184 LFSATLDGDVDKLVKQFMHSPVTHSTAPVEAAVDTMTHHLVFVGDRDSRNDVVVRIAARE 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I+F   K  V      L + G +   +HG+  Q +R K +  F +G++ ++VA
Sbjct: 244 GKT----ILFMRTKHGVDRQAKKLRRVGINALPLHGDKGQGARTKAIEGFADGSVPVLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI DV  V + D P   + Y+HR GRT R G  G   TLV  +     D + 
Sbjct: 300 TDIAARGIDIADVSLVVHVDPPAEHKAYLHRAGRTARGGASGAVVTLVMDQ---QRDEVA 356

Query: 362 KLIEKK-VDWLNGDLSSLNPPLEKIDIAQHNHARK--NNPIP------QKSTGFDRRKKN 412
           KLI+K  V     DLS    P    ++A+   ARK    P+P        S G   +++N
Sbjct: 357 KLIKKAGVKAFELDLSDRPNPAGAPELAKITGARKPSGEPLPPPHQNNPASRGGSSKRQN 416

Query: 413 YSSQ 416
              Q
Sbjct: 417 AGDQ 420


>gi|149187436|ref|ZP_01865734.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           shilonii AK1]
 gi|148838972|gb|EDL55911.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           shilonii AK1]
          Length = 442

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 141/412 (34%), Positives = 219/412 (53%), Gaps = 12/412 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL  +++  +    + K T IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKELGLDNRLLKNLSHYDFKKATDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   R PR +IL PTRELA QV    +      +    L++GG  F  Q K L
Sbjct: 61  HKALKSKAFSARDPRAVILAPTRELAKQVYGELKSMLGGLSYDATLILGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGR+ DH     L ++ ++ L++DEADRMLD+GF P ++ I +     R 
Sbjct: 121 RRYPKFIVATPGRLADHLEHRSLFLDGLDTLILDEADRMLDLGFAPELRRIHNAAKHRRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+   E+  ++   L  PKRI +   +   + I   F         K A+L++
Sbjct: 181 QTLMFSATLDHAEVNDIAAEMLDAPKRIAIGVSNEEHKDITQKFYLC-DHLDHKEAILER 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+ Q   K  IIF   + +   L   L ++     A+ GN++Q  R  I+S F+    +
Sbjct: 240 ILE-QAEYKQVIIFTATRVDTERLTKWLNEKKLKAVALSGNLNQTQRNAIMSQFERHVFK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RG+DI  V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D    
Sbjct: 299 ILVTTDVASRGIDIASVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSF 358

Query: 358 DAIEKLIEK-----KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
             +E  +++     +++ L G      P  +K    +   A K  P  +K+T
Sbjct: 359 KRVEAFLQQDLTFSELEGLKGKFKGFRP--KKPAFNKKATATKGKPQQKKAT 408


>gi|313202589|ref|YP_004041246.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312441905|gb|ADQ78261.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 443

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 208/369 (56%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  ++  ++ A+ D G  +PT IQ K  P+++   D+ GIAQTGTGKT +++LP L
Sbjct: 1   MTFTDFNINSPLLNALSDLGLTQPTTIQEKAYPVIMSGKDMVGIAQTGTGKTIAYLLPCL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +    + + P+ LI+ PTREL  QV +  EK     ++ V  + GG+    Q   + 
Sbjct: 61  R--QWKFTKEKHPQILIVVPTRELVIQVVEQVEKLTTYMSVRVVGVYGGVNMIRQTPLVV 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVL+ TPGR+LD    G L + +I+  VIDE D ML++GF P +  I  L+P  RQ 
Sbjct: 119 AGVDVLVATPGRLLDLALNGSLKLKSIKRFVIDEVDEMLNLGFRPQLVRIIDLLPTKRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+++EL+ +  +F   P  IE     +  E I+         Y+ K  +L+ LL 
Sbjct: 179 LMFSATISEELKDLVHDFFVEPLEIEAAPTGTPLENIKQIGFRVPNFYT-KVNMLEFLLN 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +       ++F + KK    L   +  K       IH N  Q +R + +  FKE   +++
Sbjct: 238 NHPEFSKVLVFTSTKKLADALYDEIASKFPGQFGLIHSNKSQNNRFESMRGFKESEYRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+ ARGLDI DV HV NFDVP   ENY+HRIGRTGRA + G A T + K D ++ +A
Sbjct: 298 IATDIVARGLDISDVSHVVNFDVPEVPENYMHRIGRTGRADKKGVALTFITKADKEYREA 357

Query: 360 IEKLIEKKV 368
           IE L+ KK+
Sbjct: 358 IEALMNKKI 366


>gi|294911908|ref|XP_002778095.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239886216|gb|EER09890.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 463

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 135/370 (36%), Positives = 203/370 (54%), Gaps = 8/370 (2%)

Query: 3   FADLGLSPKV--VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           F  LG+ P++   C VL   +  P+ IQ +TIP  LQ  D+  +A+TG+GKT +F +P++
Sbjct: 31  FESLGVCPELCKACDVLQ--WEHPSKIQEETIPYALQGRDLIALAETGSGKTGAFAIPII 88

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L       +     +L PTREL  Q+   FE  G + NLT A ++GG+    Q   L 
Sbjct: 89  QKLLDAAPHRKSTWACVLAPTRELCVQIGQQFEGLGASINLTTATIVGGLDMVTQAMALS 148

Query: 121 RGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   +++ +PGR++DH    K   +  I+ LV+DEADR+L M F   +  I    P  RQ
Sbjct: 149 KKPHIIVASPGRLVDHLENTKGFHLKTIKFLVMDEADRLLGMDFEDALNKIVQSCPRDRQ 208

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT+++ ++    L  P + EV      A+ +   ++  +  +  K A L  LL
Sbjct: 209 TFLFSATMTNKVSQLQRASLTRPVKCEVARKFDVAKGLVQNYM--FVPHKHKHAYLAALL 266

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +   +   +IF +   N   +  +L   G +   +HG + Q  R+  L+ F+ GT  ++
Sbjct: 267 -AHFKLSTVMIFVDTCLNAQRMATTLRHLGHNCVCLHGKMTQTHRLGALNQFRAGTRSVL 325

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V NFDVP   E YIHR+GRT RAGR G++ TLV + DI+    
Sbjct: 326 VATDVAARGLDIPSVDVVINFDVPKNPEEYIHRVGRTARAGRTGRSVTLVTQYDIEPFQR 385

Query: 360 IEKLIEKKVD 369
           IE    KK++
Sbjct: 386 IENKQGKKME 395


>gi|116668332|pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
           A Resolution
          Length = 374

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 133/379 (35%), Positives = 209/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 3   FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQC 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA QV       G   N+     IGG       +KL+ G
Sbjct: 63  LD---IQVRETQALILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 119

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 120 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 179

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 180 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 239 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 295 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIRVLRD 354

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 355 IEQYYSTQIDEMPMNVADL 373


>gi|221133360|ref|ZP_03559665.1| ATP-dependent RNA helicase SrmB [Glaciecola sp. HTCC2999]
          Length = 422

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 206/368 (55%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  L L   +  A+ D G+  PT IQ   IP  ++  D+   A TGTGKTA+F+LP    
Sbjct: 2   FEQLELHADLCNALGDMGFTAPTSIQSSVIPKAMEGRDILASAPTGTGKTAAFLLPAAQF 61

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R      R LIL PTRELA Q  ++  +  ++ N+   ++ GGI +      L +
Sbjct: 62  LLDFPREYHGATRILILSPTRELAIQTYEHALEITQHTNIVCGVITGGINYGTDRDTLAK 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+L+ TPGR+ +H  +      +IE++++DEADRMLDMGF   +  I S   + +Q++
Sbjct: 122 NLDILVATPGRLFEHIEKESFDCRDIEVMILDEADRMLDMGFRSIVNQIASEARWRKQSM 181

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+    + + S++ L NP+ I V+ PS   +   H +       S K  LL+ +L 
Sbjct: 182 LFSATLEGPGIAQFSKDLLVNPESITVD-PSRKEKAKIHQWYHLADDASHKYQLLKHILS 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   ++ I+F   ++ +  L   L      VC + G + Q  R + +S FK G +++++
Sbjct: 241 EQ--AESAIVFVKTRERLQQLKDRLASDDIDVCWLQGEMPQDKRNQAMSRFKNGEVKILL 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV NFD+P  ++ Y+HRIGRTGRAG  G A ++V   D   +  I
Sbjct: 299 ATDVAARGIDVDDISHVINFDMPRTSDVYLHRIGRTGRAGAKGTAISIVEAHDFAMLGRI 358

Query: 361 EKLIEKKV 368
            + I++ +
Sbjct: 359 ARYIKEVI 366


>gi|326693663|ref|ZP_08230668.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
           [Leuconostoc argentinum KCTC 3773]
          Length = 454

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 133/364 (36%), Positives = 206/364 (56%), Gaps = 9/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L P+++ A+   G+ KPTP+Q K IP +LQ  DV G +QTG+GKT +F++P+   
Sbjct: 8   FGQFNLKPEIIIALTKIGFTKPTPVQAKLIPAILQGKDVVGQSQTGSGKTHTFLIPIFNQ 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKLE 120
           LE+ R  V+    +I  P+RELAAQ+    + +    N  +T+A  +GG     Q K+LE
Sbjct: 68  LEQDRQYVQ---AVITTPSRELAAQITKAAKDFASQLNPDITIAEYVGGTDKLRQIKQLE 124

Query: 121 RG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++I TPGRI D    G L ++ +  +V+DEAD  LDMGF+  +  I   +P   Q
Sbjct: 125 NNQPQIVIGTPGRIKDLVESGALKLHAVHTMVVDEADMTLDMGFLTEVDYIAGAMPKDLQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSATM ++L+   + ++ NP    +   +  A+TIE+  +AT ++   K  ++ Q+L
Sbjct: 185 TLVFSATMPEKLKPFLKKYMANPLFEAIPVSTVIADTIENWLLATKSK--DKNDVIYQVL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +     +IF N K     +   L  +G  V  IHG+I+ R R +++   +    Q  
Sbjct: 243 TTGNPYL-ALIFANTKDRAKEIASDLRGRGLKVAEIHGDIEPRERRRVMKAIQNLEYQYF 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+DI  V HV N D+P+  E ++HR+GRTGR G  G A TL   ++   +  
Sbjct: 302 VATDLAARGIDIEGVSHVINDDIPSELEFFVHRVGRTGRNGMPGLAITLYGPDEEDEVAE 361

Query: 360 IEKL 363
           +E L
Sbjct: 362 LEAL 365


>gi|226306589|ref|YP_002766549.1| ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
 gi|226185706|dbj|BAH33810.1| putative ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
          Length = 686

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 132/349 (37%), Positives = 195/349 (55%), Gaps = 7/349 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++GL  ++V A+       P+PIQ ++IP  L   +V G AQTG+GKT +F LPMLT 
Sbjct: 66  FAEIGLPEQLVAALARNSITVPSPIQAQSIPDALAGTNVLGRAQTGSGKTLAFGLPMLTR 125

Query: 63  LEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L +   R   + PR L+L PTRELA QV D+   Y     LTV   +GG PF  Q  +L 
Sbjct: 126 LSRHEDRPAAKRPRALVLVPTRELAFQVVDSLNSYAGALGLTVRPAVGGTPFAKQVDQLR 185

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVL+ TPGR+ DH  +G  +++++EI  +DEAD+M DMGF+P +++I    P   Q 
Sbjct: 186 RGVDVLVATPGRLGDHLRQGTCILDSVEITALDEADQMADMGFLPEVRSILGETPADGQR 245

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  E+Q +   FL N          ++ +T+EH +V    +  K   L +  + 
Sbjct: 246 LLFSATLDREVQSLVRQFLANHVTHSTEDGRASVDTMEH-YVLLVDRGQKDSVLAE--IG 302

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++D     I+F   K     +   L   G +  ++HG   Q  R ++L  FK G   ++V
Sbjct: 303 ARDGRT--IMFARTKLGCEGITDRLRAVGIAAESLHGGKAQNQRTRVLERFKNGRTPVLV 360

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           A+D+AARG+ +  +  V + D P   ++Y+HR GRT RAG  G    +V
Sbjct: 361 ATDVAARGIHVDGIDLVVHVDPPADHKDYLHRAGRTARAGEKGTVVAIV 409


>gi|195163860|ref|XP_002022767.1| GL14575 [Drosophila persimilis]
 gi|194104790|gb|EDW26833.1| GL14575 [Drosophila persimilis]
          Length = 1243

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 129/363 (35%), Positives = 208/363 (57%), Gaps = 15/363 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 539 WAQCGVSKKEMDVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRH 598

Query: 63  ------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L++G   +     +I+ PTREL  Q+  +  ++ K+  L    + GG     Q 
Sbjct: 599 ILDQPNLDEGDGAI----AIIMAPTRELCMQIGKDIRRFSKSLGLRPVCVYGGTGISEQI 654

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RG+++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   
Sbjct: 655 AELKRGSEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDN 714

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           V   RQT++FSAT   +++ ++   L+ P  + V   S   + +E   V      SK   
Sbjct: 715 VRPDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKDVEQ-HVVILNDESKFFK 773

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL+ LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +FK 
Sbjct: 774 LLE-LLGIYQEAGSIIVFADKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKS 832

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  E 
Sbjct: 833 GKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQ 892

Query: 354 IKH 356
            ++
Sbjct: 893 SRY 895


>gi|126644118|ref|XP_001388195.1| hypothetical protein [Cryptosporidium parvum Iowa II]
 gi|126117268|gb|EAZ51368.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
          Length = 586

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 140/403 (34%), Positives = 218/403 (54%), Gaps = 10/403 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G    +V A+   G+ +PT IQ++  P+ L  HD+ GIA+TG+GKT  F+LP + I
Sbjct: 170 FVTSGFPNFLVDALYRTGFTEPTAIQVQGWPVALSGHDMIGIAETGSGKTLGFLLPAM-I 228

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +  +R    P  L+L PTREL  Q+ +   ++G  + L    + GG+P   Q   +
Sbjct: 229 HIRAQPLLRYGDGPICLVLAPTRELVEQIREQANQFGSIFKLRNTAIYGGVPKRPQQASI 288

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G ++ I  PGR++D    G   ++ +  LV+DEADRMLDMGF P I+ + S +   RQ
Sbjct: 289 RNGVEICIACPGRLIDLLEEGYTNLSRVTYLVLDEADRMLDMGFEPQIRKLVSQIRPDRQ 348

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC---FVATYAQYSKKCALLQ 236
           TLL+SAT   E+QK++ +  +    I +N  S  A    H    +V    +  KK  L  
Sbjct: 349 TLLWSATWPKEVQKLARDLCKEIP-IHINVGSVDALKASHNIKQYVNVVEESEKKAKLKM 407

Query: 237 QLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L Q   ++    +IFC  K+    L   L   G+    IHG+  Q  R  +L+ F+ G 
Sbjct: 408 FLGQVMVESAPKVLIFCETKRGADILTKELRLDGWPALCIHGDKKQEERTWVLNEFRTGA 467

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +M+A+D+AARGLDI D+  V NFD PN+ E+YIHRIGRTGRAG  G + +    +  +
Sbjct: 468 SPIMIATDVAARGLDIKDINFVINFDFPNQIEDYIHRIGRTGRAGATGVSLSFFTPDKYR 527

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
               + K++++    +  +L  L+P  +++   ++   R+NNP
Sbjct: 528 MASDLIKVLKEAKQRVPPELFKLSPQNKRMH-PRNTGFRRNNP 569


>gi|20373098|dbj|BAB91216.1| RNA helicase [Mesocricetus auratus]
          Length = 662

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 219/392 (55%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 182 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241

Query: 63  L-------------EKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
           +             E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 242 IYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 301

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 302 GGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 361

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 362 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 420

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + +   K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 421 -WVEEMDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 479

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 480 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 539

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 540 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 571


>gi|314983245|gb|EFT27337.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA3]
 gi|315090093|gb|EFT62069.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA4]
          Length = 494

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 140/383 (36%), Positives = 209/383 (54%), Gaps = 28/383 (7%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML------------TILEKGR 67
           G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L             +  KG+
Sbjct: 5   GIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILLRITLPGDEGWEELTTKGK 64

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
                P+ L++ PTRELA QV+ +           V  + GG+ +E+Q   L+ G DV++
Sbjct: 65  -----PQALVMCPTRELALQVSKDISTAASVRGARVLTVYGGVGYESQIDALKAGVDVVV 119

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+LD   R  L ++++ I+V+DEAD MLD+GF+P ++N+    P +RQT+LFSATM
Sbjct: 120 GTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFSATM 179

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
              +  ++ + L  P  +      + A   +       A    K  ++ ++LQ+ D  K 
Sbjct: 180 PAPIMALARSQLHRPVHVRAEGADTQATVPDTQQFVYQAHPLDKIEIIGRILQANDVEKV 239

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+ G   ++VA+D+AAR
Sbjct: 240 -IIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGDATILVATDVAAR 298

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           G+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   D+       KLI K 
Sbjct: 299 GIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGVAVTLVDWADVTRW----KLINKA 354

Query: 368 VDWLNGDLSSLNPPLEKIDIAQH 390
              LN +LS    P+E    + H
Sbjct: 355 ---LNLELSE---PVETYSTSPH 371


>gi|255101321|ref|ZP_05330298.1| ATP-dependent RNA helicase [Clostridium difficile QCD-63q42]
          Length = 497

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 218/371 (58%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L+ K++ ++   GY  P+ +Q + IP +L+  ++   ++TG+GKTASF +P+   
Sbjct: 5   FEKFKLNEKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLC-- 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E         + LI+ PTRELA QV D     G+   +  + + G    + Q  +L++ 
Sbjct: 63  -ENINVDYNNIQALIVVPTRELALQVKDEISDIGRLKKVRCSAIFGKQSIKDQIAELKQR 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NRG + + N++ LVIDEAD+M + GF+  ++ I   +P  +   L
Sbjct: 122 VHIVVATPGRILDHINRGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVSL 181

Query: 183 FSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           FSAT+ +E++ + E ++ +     IE N   +  +T +       A   +K  LL++L+ 
Sbjct: 182 FSATIDEEIKYICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYILLKELIY 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++  K+ IIFCN K+ V  L + + K+GF +  +H ++ Q  R+ ++ +FK     ++V
Sbjct: 242 SENP-KSVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQKFNILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +SD+A+RG+ I D+  V N+DVP   ENYIHRIGRTGR G  GKA T+V ++D K+I+ I
Sbjct: 301 SSDVASRGIHIDDISLVINYDVPQDKENYIHRIGRTGRKGNSGKAITIVTEKDEKYIENI 360

Query: 361 EKLIEKKVDWL 371
           E  I  K++ L
Sbjct: 361 ETYIGYKINEL 371


>gi|221065934|ref|ZP_03542039.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
 gi|220710957|gb|EED66325.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
          Length = 430

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 139/376 (36%), Positives = 208/376 (55%), Gaps = 16/376 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL  +++ A LD G    TPIQ + IP VL   D+   A TG+GKT +++LP+L
Sbjct: 1   MSFAPLGLRAELLDATLDLGLRDATPIQTEAIPAVLAGRDLWACAPTGSGKTMAYLLPLL 60

Query: 61  -TILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEA 114
              L + R +   VR   TLIL PTRELA QV ++     +         ++ GG+    
Sbjct: 61  QAWLAQKRGQTGFVRPLATLILVPTRELALQVHESLSDITRQLREQPRSRVVYGGVSINP 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  +L   AD L+ TPGR+LD      + +N ++ LV+DEADR+LD GF   +  + +L+
Sbjct: 121 QMMQLRGSADFLVATPGRLLDLVENNAVRLNTVQHLVLDEADRLLDQGFAEELNRVLALL 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP-----SSTAETIEHCFVATYAQYS 229
           P  RQTLLFSAT    ++ ++   L +P R++V+       S++ E I    +A  +  +
Sbjct: 181 PAKRQTLLFSATFPQNVEALAARLLHDPVRVQVDADQAAEHSASPENISQRAIAVDS--N 238

Query: 230 KKCALLQQLL---QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           ++  LL+QL+   ++Q   +  ++F  ++     L   L K G      HG++ Q +R +
Sbjct: 239 RRTQLLRQLVKQGENQPEWERALVFVAKRHTAEMLADKLYKAGIYATTFHGDMSQGARKE 298

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
           +L  FK    QL++ +DLAARG+DI  +  V N+D+P    +YIHRIGRTGRAG  G A 
Sbjct: 299 VLDQFKAKRWQLLITTDLAARGIDIAQLPTVINYDLPRSPADYIHRIGRTGRAGHAGCAI 358

Query: 347 TLVAKEDIKHIDAIEK 362
           T V+  D  H   I K
Sbjct: 359 TFVSPADTVHWQLICK 374


>gi|119469633|ref|ZP_01612502.1| ATP-dependent RNA helicase, specific for 23S rRNA [Alteromonadales
           bacterium TW-7]
 gi|119446880|gb|EAW28151.1| ATP-dependent RNA helicase, specific for 23S rRNA [Alteromonadales
           bacterium TW-7]
          Length = 466

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 132/347 (38%), Positives = 208/347 (59%), Gaps = 7/347 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L   +V  +   GY   TP+Q +++P VL+  D+   A+TG+GKTA+F L +L  
Sbjct: 10  FSSLALPAGLVDNLSTLGYAHMTPVQAQSLPPVLEGKDIIAQAKTGSGKTAAFSLGVLAK 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R R++   +L+L PTRELA QVA    K  +  +N+ +  L GG+    Q   LE 
Sbjct: 70  LNVKRFRIQ---SLVLCPTRELAEQVAVEMRKLARGIHNIKILTLCGGVSIGPQIGSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  +G L ++++E LV+DEAD+MLDMGF   +  I   +P  RQTL
Sbjct: 127 GAHIIVGTPGRVDDHIRKGTLRLDDVETLVLDEADQMLDMGFQDTLDAIIECIPQNRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++ +++  L NP+ I+V      + TI+  F       +K+     +LL  
Sbjct: 187 LFSATFPRAIEAIAKRVLSNPEMIKVEEEQEKS-TIKQYFYKM--DNNKQRYPTLKLLLL 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T ++ ++FCN K     +C  L  +GFS  A+HG+++QR R + L +F   +  ++VA
Sbjct: 244 KFTPQSCVVFCNTKVETQQVCDDLADEGFSAVALHGDLEQRDRERTLIHFANKSASILVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +D+AARGLDI D+  V N+ + +  + ++HR+GRTGRAG+ G A ++
Sbjct: 304 TDVAARGLDIDDMDMVINYHLAHDPQTHVHRVGRTGRAGKKGIACSI 350


>gi|323496504|ref|ZP_08101562.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           sinaloensis DSM 21326]
 gi|323318781|gb|EGA71734.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           sinaloensis DSM 21326]
          Length = 444

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 137/388 (35%), Positives = 208/388 (53%), Gaps = 10/388 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + K T IQ K IP+ +   D+   ++TG+GKT +FVLP+L
Sbjct: 1   MHFKDLGLDNRLLKNLKHLDFKKATEIQQKAIPVAIAGKDLLASSKTGSGKTLAFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   + PR +IL PTRELA QV           +    L++GG  F  Q K L
Sbjct: 61  HKSLKSKAFSAKDPRAVILAPTRELAKQVYGELRTMLAGLSYDATLIVGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            +    ++ TPGR+ DH     L +  +E LV+DEADRMLD+GF P ++ I +     R 
Sbjct: 121 RKYPKFIVATPGRLADHLEHRSLFLEGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+   E+  ++   L  PKRI V   +   + I   F         K A+L++
Sbjct: 181 QTLMFSATLDHAEVNDIAFEMLNAPKRIAVGVSNEEHKDITQKFYLC-DHLDHKEAILER 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++  +  K  IIF   + +   L   L ++     A+ GN++Q  R  I+S F+    +
Sbjct: 240 VIEEAN-YKQLIIFTATRADTDRLTEKLNEKKLKAIALSGNLNQTQRNTIMSQFERAVFK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLDI +V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D    
Sbjct: 299 ILVTTDVASRGLDIANVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSF 358

Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNP 380
             +E  +++ + +     L G    L P
Sbjct: 359 KRVEAYLQQDLSFSELEGLKGKFKGLKP 386


>gi|322711331|gb|EFZ02905.1| ATP-dependent RNA helicase dbp-2 [Metarhizium anisopliae ARSEF 23]
          Length = 545

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 130/361 (36%), Positives = 199/361 (55%), Gaps = 11/361 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 138 FDEAGFPRYVLDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 197

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+G++  +    + GG+P   Q 
Sbjct: 198 INAQPLLAPGDG----PIVLVLAPTRELAVQIQQEITKFGRSSRIRNTCVYGGVPKGPQI 253

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 254 RDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIEQIRP 313

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E++ ++ +F  +  ++ + +   +A       V   +   K+  +++
Sbjct: 314 DRQTLMYSATWPKEVRAMAADFQTDFIQVNIGSMDLSANHRITQIVEVVSDMEKRDRMIK 373

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L Q  +  +N I IF   K+   ++   L + G+   +IHG+  Q  R  +L  FK G 
Sbjct: 374 HLEQVMENKENKILIFVGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGK 433

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+A+RG+D+ ++ HV N+D PN +E+YIHRIGRTGRAG  G A T    ++ K
Sbjct: 434 SPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNQK 493

Query: 356 H 356
            
Sbjct: 494 Q 494


>gi|195390582|ref|XP_002053947.1| GJ24162 [Drosophila virilis]
 gi|194152033|gb|EDW67467.1| GJ24162 [Drosophila virilis]
          Length = 710

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 124/352 (35%), Positives = 204/352 (57%), Gaps = 14/352 (3%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE----- 64
           P ++  +   G+  P+PIQ +  P++L+ HD+ GIAQTGTGKT +F+LP +   E     
Sbjct: 308 PDLLGEIQKQGFAHPSPIQAQAWPILLKGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTP 367

Query: 65  ---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +G A V     L+L PTRELA Q+    +KY     +    + GG     Q   +ER
Sbjct: 368 RGTRGGANV-----LVLAPTRELALQIEMEVKKYSFR-QMKAVCIYGGGNRNMQISDVER 421

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+++ICTPGR+ D    G + +++I  LV+DEADRMLDMGF P I+ +   +   RQT+
Sbjct: 422 GAEIIICTPGRLNDLVQAGVVNVSSITYLVLDEADRMLDMGFEPQIRKVLLDIRPDRQTI 481

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT    +++++++++++P ++ V +    A       +        K  +L+  +++
Sbjct: 482 MTSATWPPGVRRLAQSYMKDPIQVCVGSLDLAATHSVEQVIELLEDDRDKFHVLKSFVKN 541

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+FC +K    ++   L   GF+   IHGN DQ  R + +++ K G +++++A
Sbjct: 542 MSKTDKIIVFCGRKARADDVSSDLSLAGFATQCIHGNRDQSDREQAIADIKSGIVRILIA 601

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +D+A+RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + + + ++D
Sbjct: 602 TDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGRAGRLGTSISFITRDD 653


>gi|164655062|ref|XP_001728662.1| hypothetical protein MGL_4141 [Malassezia globosa CBS 7966]
 gi|159102545|gb|EDP41448.1| hypothetical protein MGL_4141 [Malassezia globosa CBS 7966]
          Length = 623

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 139/398 (34%), Positives = 216/398 (54%), Gaps = 22/398 (5%)

Query: 11  KVVCAVLDA----GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           ++  A+LDA    GY +PT IQ + IP+ L   D+ G+A+TG+GKTASFV+PML  +   
Sbjct: 233 RIPGAILDAIEAMGYREPTSIQRQAIPIGLIPRDLIGLAETGSGKTASFVVPMLAYV--- 289

Query: 67  RARVRM--------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            A+ RM        P  LIL PTRELA Q+     K+     + V  L+GG     Q   
Sbjct: 290 MAQPRMAPGDVYMGPYGLILAPTRELALQIEAETRKFAARLQIQVVSLVGGRDLGEQAFH 349

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  GA+++I TPGR+ D   R  L++     LV+DEADRM+DM +   +  I   +P TR
Sbjct: 350 LNDGAEIVIATPGRLQDCLERHMLVLGQCHYLVMDEADRMVDMNYEEALHYILDSLPTTR 409

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            T+L+SATM   + K++  +L  P  + +        TIE C     ++  ++    Q+L
Sbjct: 410 TTMLYSATMPPTVDKIARTYLTRPVTVTIGQAGQAVGTIEQCVEFVDSEEDRQ----QRL 465

Query: 239 LQSQDT--MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L   D+      I+F NQK N   +   L + G++V  +H  + Q  R   +++ ++G  
Sbjct: 466 LHVLDSGFAPPMIVFVNQKANADLVGKDLRRAGWNVAVLHSGLSQPQREAAIASLRDGYN 525

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++  +D+ ARG+D+PDV  V N+  P +  +YIHRIGRTGRAG+ G A + V  +D +H
Sbjct: 526 EVLCCTDIGARGIDLPDVSLVVNYQFPTQFASYIHRIGRTGRAGKKGHAMSFVNDDDAQH 585

Query: 357 IDAIE-KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
             A+  +L +  V  + G L++ +  L+      H +A
Sbjct: 586 FYALRLELAKSPVSSVPGALANHSAALQAPSQTGHANA 623


>gi|114794619|pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
 gi|114794620|pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
 gi|114794621|pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
 gi|114794622|pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
          Length = 391

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 209/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 18  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 77

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 78  LD---IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 134

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 135 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 194

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 195 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 253

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 254 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 310 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 369

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 370 IEQYYSTQIDEMPMNVADL 388


>gi|291004226|ref|ZP_06562199.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 491

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 139/401 (34%), Positives = 215/401 (53%), Gaps = 11/401 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  ++V A+ D G  +  PIQ  TIP  L   DV G  QTG+GKT +F LP+L  
Sbjct: 48  FDSLGLPERLVRALGDLGMTEAFPIQAATIPDALGGRDVLGRGQTGSGKTLAFGLPLLA- 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++   AR   PR L+L PTRELA QV D+ +   K   L V  ++GG+ F  Q   L RG
Sbjct: 107 MQGSSARPLHPRGLVLVPTRELATQVTDSLKPLAKALGLYVREVVGGMSFSRQADTLRRG 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVL+ TPGR+ DH  +G  +++ +E   +DEAD+M DMGF+P ++ +  LVP   Q LL
Sbjct: 167 VDVLVATPGRLSDHVRQGTCVLSEVERTALDEADQMADMGFLPQVRELLDLVPADGQRLL 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  ++ K+   ++ +P    +  P+++ ++++H  +   A+  +K  +L ++   +
Sbjct: 227 FSATLDGDVDKLVHEYMTDPVVHSLAPPAASVDSMDHHQLLVTAE--QKQDVLARIGARE 284

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F   K +   L   L   G    A+HG   Q +R +IL  F++G    +VA+
Sbjct: 285 GRT---IMFVRTKHHADRLTRKLRAAGVRAGALHGGKAQNARSRILEEFRQGGTTTLVAT 341

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE- 361
           ++AARG+ + DV  V + + P   ++Y+HR GRT RAG  G   TLV  +  +   A+  
Sbjct: 342 NVAARGIHVDDVSLVVHVEPPADPKDYLHRAGRTARAGATGTVVTLVTDDQKRAFRAMTA 401

Query: 362 ----KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
               +    KV   + +L+ L    E   IA     R  +P
Sbjct: 402 KAGVEATATKVAPADEELARLTGAREPSGIAVTEPKRGESP 442


>gi|325271804|ref|ZP_08138271.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
 gi|324103051|gb|EGC00431.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
          Length = 396

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 129/321 (40%), Positives = 195/321 (60%), Gaps = 5/321 (1%)

Query: 48  GTGKTASFVLPMLT--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105
           GTGKTA F LP+L    LE  +      R L+L PTRELA QV +N  +Y +N  L+   
Sbjct: 1   GTGKTAGFALPVLQRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLSTYA 60

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG+    Q  +L RG D+L+ TPGR+LD F +  +  N ++ LV+DEADRMLD+GF  
Sbjct: 61  VYGGVSINPQMMRLRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAE 120

Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
            +Q++ + +P  RQTLLFSAT +++++ ++   L +P  IEV+  ++ A +++   V   
Sbjct: 121 ELQSVYAALPRKRQTLLFSATFSEQIRLLAGLALSDPLSIEVSPRNAAAASVKQWLVPV- 179

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
               +K  L   L++ Q   K  ++F   +  V  L   L  +G +   IHG+  Q +R 
Sbjct: 180 -DKKRKEDLFCHLMRKQ-RWKQVLVFAKTRNGVDQLVARLLAEGVNADGIHGDRPQATRQ 237

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L +FK   IQ++VA+D+AARGLDI D+  V N D+P  AE+Y+HRIGRTGRAG  G+A
Sbjct: 238 RALDSFKAREIQVLVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEA 297

Query: 346 FTLVAKEDIKHIDAIEKLIEK 366
            +LV  ++++ + AIE L  +
Sbjct: 298 ISLVCADEVQLLAAIEVLTRQ 318


>gi|195499159|ref|XP_002096830.1| bel [Drosophila yakuba]
 gi|194182931|gb|EDW96542.1| bel [Drosophila yakuba]
          Length = 792

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 151/388 (38%), Positives = 218/388 (56%), Gaps = 25/388 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ L+  +   V  A Y KPTP+Q   IP+++   D+   AQTG+GKTA+F++P+L  
Sbjct: 292 FDDVQLTEIIRNNVALARYDKPTPVQKYAIPIIINGRDLMACAQTGSGKTAAFLVPILNQ 351

Query: 62  ILEKGRA-----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           + E G             R + P  L+L PTRELA Q+ +  +K+     +  A+L GG 
Sbjct: 352 MYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGN 411

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L+RG  +++ TPGR+ D   RGK+ + NI  LV+DEADRMLDMGF P I+ I
Sbjct: 412 NTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRI 471

Query: 171 TSLV--PFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
              +  P T  RQTL+FSAT   ++Q+++ +FL N   + V    ST+E I    +  Y 
Sbjct: 472 VEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVY- 530

Query: 227 QYSKKCALLQQLLQSQDTMKN-----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
           +  K+  LL  L   +D  +       +IF   KK   +L   L +    V +IHG+  Q
Sbjct: 531 EPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQ 590

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           + R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P+  E Y+HRIGRTGR G 
Sbjct: 591 KEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGN 650

Query: 342 HGKAFTLVAKEDIKHI--DAIEKLIEKK 367
            G A +    E  ++I  D +E LIE K
Sbjct: 651 LGVATSFF-NEKNRNICSDLLELLIETK 677


>gi|47937760|gb|AAH72323.1| Ddx49-A-prov protein [Xenopus laevis]
          Length = 429

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 155/420 (36%), Positives = 227/420 (54%), Gaps = 17/420 (4%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           GLS  ++      G +KP+P+Q   IP +L+  D  G A+TG+GKTA+FVLP+L  L + 
Sbjct: 14  GLSSWLIDQCSQLGILKPSPVQENCIPPILEGRDCMGCAKTGSGKTAAFVLPILQKLSED 73

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
              +     L+L PTRELA Q+A+ F   GK   L   ++IGG+   AQ  +L R   ++
Sbjct: 74  PFGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIIGGMDMVAQALELSRKPHIV 130

Query: 127 ICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTRQTLL 182
           I TPGR+ DH        +  I  LV+DEADR+L+ G   F   +Q I   VP  RQTLL
Sbjct: 131 IATPGRLADHIRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTQDLQVILEAVPAQRQTLL 190

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS- 241
           FSAT+TD LQ++    +  P   E  +   T E ++  ++    +   K A L  L+Q  
Sbjct: 191 FSATLTDTLQELKTVAMNKPFFWESTSEVRTVEQLDQRYILVPEKV--KDAYLVYLIQKF 248

Query: 242 QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           QD  ++   +IF N  K    L   L +  F   A+H  + Q+ R   L+ FK    +++
Sbjct: 249 QDEHEDWSIMIFTNTCKTCQILNMMLREFSFPSVALHSMMKQKQRFAALAKFKSSVFKIL 308

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDIP V  V N + P   + YIHR+GRT RAGR+G A TLV + DI  + A
Sbjct: 309 IATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGMAITLVTQYDIHLVHA 368

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE  I  K++    +       + KI + Q N AR+   I  + T FD +K++   + ++
Sbjct: 369 IEGQINMKLE----EFKVKENEVLKI-LTQVNVARRECEIKLECTDFDEKKRDKQEETAY 423


>gi|223056271|gb|ACM80368.1| vasa [Lytechinus variegatus]
          Length = 679

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 138/373 (36%), Positives = 217/373 (58%), Gaps = 13/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + GL   V+  V  A Y KPTP+Q   IP++    D+   AQTG+GKTA+F+LP++T 
Sbjct: 232 FEEAGLDETVLENVRKARYAKPTPVQKYAIPIIGAGLDLMACAQTGSGKTAAFLLPIITN 291

Query: 62  -ILEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            I + G     + V+ P  LI+ PTRELA+Q+ +   K+ +N +L   ++ GG     Q 
Sbjct: 292 MITQSGCVSCFSVVQEPLALIVSPTRELASQIQNEARKFCRNTSLRPVVIYGGTSVSHQT 351

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS---L 173
           ++++ G  +L+ TPGR+ D   RG + +  ++ L++DEADRM+DMGF P IQ +     +
Sbjct: 352 REVQNGCSILVATPGRMHDFIGRGYIGLGKLKYLILDEADRMVDMGFGPEIQKLIDHPHM 411

Query: 174 VP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            P   RQTL+FSAT   E+Q+ +  +L +   + V      A  IE   V +  QY K+ 
Sbjct: 412 PPKGERQTLMFSATFPPEIQEKARMYLNDYLFLTVGRVGGAASDIEQ-RVLSVKQYEKRE 470

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L++ +L+ Q+     ++F   K+N   L   L +  F   +IHG+  Q+ R + L +FK
Sbjct: 471 KLME-ILRDQNEDDRTLVFVETKRNADFLATLLSQSDFHATSIHGDRQQQEREEALRDFK 529

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AK 351
            G   ++VA+ +AARGLDIP V HV N+D+P+  + Y+HRIGRTGR G  G++ +   A 
Sbjct: 530 IGRAPVLVATSVAARGLDIPKVKHVVNYDLPSDIDEYVHRIGRTGRVGNTGRSTSFYDAD 589

Query: 352 EDIKHIDAIEKLI 364
           +D+    A+ K++
Sbjct: 590 KDVGIARALIKIL 602


>gi|281207583|gb|EFA81766.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 802

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 137/403 (33%), Positives = 217/403 (53%), Gaps = 12/403 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+     P ++  ++ AG+  PT IQ ++ P+ L+  D+ G+A+TG+GKT +F+LP +
Sbjct: 398 LTFSQSHFPPYIMKEIVAAGFAAPTAIQAQSWPVALKGRDMIGLAETGSGKTLAFLLPGV 457

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE        P  L+L PTRELA Q+    +K+G +  +    + GG+P   
Sbjct: 458 VHINAQPFLEPNDG----PIMLVLAPTRELAMQIQAECDKFGSSSKIKNCAVYGGVPKFQ 513

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  +L  G +++I TPGR++D     K  +  +  LV+DEADRMLDMGF   I+ I S +
Sbjct: 514 QTSQLRSGVEIVIATPGRLIDLLETRKTNLKRVTYLVLDEADRMLDMGFEDQIRKILSQI 573

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTL+FSAT    +Q ++ +FL++P +I++ +   +A       +    +  K+  L
Sbjct: 574 RPDRQTLMFSATWPKVVQSLANDFLKDPIQIKIGSAELSANHNVKQIIEICEKNDKQQRL 633

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
              L +  D  +  IIF   K  V  L  +++  GF    IHG+  Q  R   L  FK+ 
Sbjct: 634 FSFLEKVGD--EKCIIFMETKNGVNLLQRNMQVAGFKCAGIHGDKTQGERDYSLQQFKKS 691

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            IQ+++A+D+A+RGLD+ D+ +V N+D PN  E+YIHRIGRTGRAG  G AFTL    D+
Sbjct: 692 GIQMLIATDVASRGLDVKDIKYVINYDFPNTIESYIHRIGRTGRAGATGTAFTLFTTNDM 751

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           +    +  ++ +   ++   L  + P           + R NN
Sbjct: 752 RLAGELITVLIEANQYVPPSLEQMAPNRGGFKSITEQYGRSNN 794


>gi|41282082|ref|NP_571016.2| pl10 [Danio rerio]
 gi|37590512|gb|AAH59794.1| Pl10 [Danio rerio]
          Length = 688

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 143/396 (36%), Positives = 221/396 (55%), Gaps = 29/396 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +   ++  +  + Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 210 FHDLEMGEIIMGNINLSRYTRPTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQ 269

Query: 63  L-----------------EKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV 103
           +                 E G+   R + P +L+L PTRELA Q+ D   K+    ++  
Sbjct: 270 IYTDGPGEALQAAKNSAQENGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRSHVRP 329

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163
            ++ GG     Q + LERG  +L+ TPGR+LD   RGK+ ++    LV+DEADRMLDMGF
Sbjct: 330 CVVYGGADIGQQIRDLERGCHLLVATPGRLLDMMERGKIGLDYCNYLVLDEADRMLDMGF 389

Query: 164 IPYIQNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
            P I+ I    ++ P   RQT++FSAT   E+Q ++ +FL++   + V    ST+E I  
Sbjct: 390 EPQIRRIVEQDTMPPKGLRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQ 449

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
             V  + + + K + L  LL +       ++F   KK    L   L ++G++  +IHG+ 
Sbjct: 450 KVV--WVEENDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDR 507

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            QR R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR 
Sbjct: 508 SQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRV 567

Query: 340 GRHGKAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
           G  G A +    ++     D ++ L+E K +   WL
Sbjct: 568 GNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWL 603


>gi|282863532|ref|ZP_06272591.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
 gi|282561867|gb|EFB67410.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
          Length = 790

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 127/347 (36%), Positives = 188/347 (54%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   +V  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L  
Sbjct: 116 FASLGLPEGIVRKLAQNGVTAPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLAA 175

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  GR   + PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LERG
Sbjct: 176 LAGGRTEKKKPRAIILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERG 235

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVL+ TPGR+ D  NRG   + ++++ V+DEAD+M D+GF+P +  +   +P   Q +L
Sbjct: 236 VDVLVATPGRLRDIINRGACSLEDVQVAVLDEADQMSDLGFLPEVTELLDQIPGGGQRML 295

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E+  + + +L NP   EV++      T+ H  +    +   K  +   +   +
Sbjct: 296 FSATMENEIGTLVKRYLSNPVTHEVDSAQGNVSTMSHHVLVVKPK--DKAPVTAAIAARK 353

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L + G    A+HG + Q +R ++L +FK+G +  +VA+
Sbjct: 354 GRT---IIFVRTQLGADRIAEQLIESGVKADALHGGMTQGARTRVLEDFKKGYVNALVAT 410

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+ +  +  V N D     ++Y+HR GRT RAG+ G   +L 
Sbjct: 411 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGVVVSLA 457


>gi|77359086|ref|YP_338661.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76873997|emb|CAI85218.1| putative ATP-dependent RNA helicase; putative cold-shock protein;
           could be specific for rRNA folding [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 462

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 137/367 (37%), Positives = 214/367 (58%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L   +V  +   GY   TP+Q +++P VL   D+   A+TG+GKTA+F L +L  
Sbjct: 6   FSSLALPSGLVDNLSTLGYTHMTPVQAQSLPPVLAGKDIIAQAKTGSGKTAAFSLGVLAK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R R++   +L+L PTRELA QVA    K  +  +N+ +  L GG+    Q   LE 
Sbjct: 66  LNVKRFRIQ---SLVLCPTRELAEQVAVEMRKLARGIHNIKILTLCGGVSIGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  +G L ++++E LV+DEAD+MLDMGF   +  I   +P  RQTL
Sbjct: 123 GAHIIVGTPGRVDDHIRKGTLRLDDVETLVLDEADQMLDMGFQDTLDAIIERIPTNRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++ V++  L NP  ++V    + + TI+  F       +K+     +LL  
Sbjct: 183 LFSATFPRAIEAVAKRVLSNPVMVKVEEEQAKS-TIKQYFYKM--DNNKQRYPTLKLLLL 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T ++ ++FCN K     LC  L  +GFS  ++HG+++QR R + L +F   +  ++VA
Sbjct: 240 KFTPQSCVVFCNTKVETQQLCDDLVDEGFSAVSLHGDLEQRDRERTLIHFSNKSASILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V N+ + +  + ++HRIGRTGRAG+ G A ++  + +   I  I 
Sbjct: 300 TDVAARGLDIDDMDMVINYHLAHDTQTHVHRIGRTGRAGKKGIACSIYGEAEAFKIAQIG 359

Query: 362 KLIEKKV 368
              E+ V
Sbjct: 360 DHYERDV 366


>gi|45361303|ref|NP_989229.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus (Silurana)
           tropicalis]
 gi|38969901|gb|AAH63223.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus (Silurana)
           tropicalis]
 gi|89271852|emb|CAJ81861.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus (Silurana)
           tropicalis]
          Length = 609

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 141/421 (33%), Positives = 224/421 (53%), Gaps = 15/421 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +      ++  V    +  PTPIQ +  P+ L   D+ G+A TG+GKT S++LP +
Sbjct: 92  LQFHEASFPANLMEVVKRQNFTDPTPIQGQGWPVALSGLDMVGVAMTGSGKTLSYLLPGI 151

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   L++G      P  L+L PTRELA QV     +YG+   L    + GG P   
Sbjct: 152 VHINHQPFLQRGDG----PILLVLAPTRELAQQVQQVAAEYGRACRLRSTCIYGGAPKGP 207

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +N    LV+DEADRMLDMGF P I+ I   +
Sbjct: 208 QIRDLERGVEICIATPGRLIDFLEAGKTNLNRCTYLVLDEADRMLDMGFEPQIRKIVDQI 267

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 268 RPDRQTLMWSATWPKEVRQLAEDFLRDYVHINIGALELSANHNILQIVDVCNDGEKDEKL 327

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+   +L   L + G+    IHG+  Q+ R  +L+ FK
Sbjct: 328 VRLMEEIMSEKENKT-IVFVETKRRCDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFK 386

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 387 HGKSPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSSKTGTAYTFFTPG 446

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           +IK ++ +  ++ +    +N  L  L     +       + R++     K  G+DR  +N
Sbjct: 447 NIKQVNDLISVLREANQAINPKLLQLVEDRGRFRGRGGMNDRRDRFSSGKRGGWDR--EN 504

Query: 413 Y 413
           Y
Sbjct: 505 Y 505


>gi|87122371|ref|ZP_01078252.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Marinomonas sp. MED121]
 gi|86162346|gb|EAQ63630.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Marinomonas sp. MED121]
          Length = 432

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 135/374 (36%), Positives = 227/374 (60%), Gaps = 12/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F DL L  +++ ++ +  +   + IQ  ++P  LQ +D+ G AQTGTGKTA+F++ M++ 
Sbjct: 55  FHDLNLPDRLLKSIAEMSFEYCSEIQAASLPETLQGYDLIGQAQTGTGKTAAFLIAMISD 114

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                +E+ R   R+ R LI+ PTRELA Q+A++  K   N ++ +  L+GG+ +E Q +
Sbjct: 115 FIDYPIEEERDS-RLARGLIIAPTRELALQIAEDAVKLTVNSDINIVSLVGGLSYEKQKQ 173

Query: 118 KLE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            LE    D+++ TPGR++D     K+L+N +E LV+DEADRML MGFIP +++I  + P 
Sbjct: 174 ILENERVDIVVATPGRLMDFARNKKVLLNKVEALVLDEADRMLSMGFIPDVKSIIRMTPH 233

Query: 177 T--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQT+LFSAT   ++Q ++  +   PK + V    +T + IE    +  A   +K  +
Sbjct: 234 KEKRQTMLFSATFPKDIQNLARQWTYFPKEVSVVPEETTNKNIEQVIYSVEA--DQKWPV 291

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L+ L++ +D  +  I+F N++    +L   L+  G +   + G + Q  R+K L+NFK G
Sbjct: 292 LESLIKEKDNQRT-IVFANRRDETRDLYERLKDAGVNCAMLSGEVAQDKRVKTLANFKNG 350

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            IQ++VA+D+A RG+ +  +  V N+ +P   E+Y+HRIGRTGR G  GK+ +  +++D 
Sbjct: 351 KIQVLVATDVAGRGIHVDGIELVVNYSLPEDPEDYVHRIGRTGRGGETGKSVSFASEDDA 410

Query: 355 KHIDAIEKLIEKKV 368
             +  IEK++ +K+
Sbjct: 411 FMVPEIEKVVGEKI 424


>gi|302766257|ref|XP_002966549.1| hypothetical protein SELMODRAFT_230807 [Selaginella moellendorffii]
 gi|300165969|gb|EFJ32576.1| hypothetical protein SELMODRAFT_230807 [Selaginella moellendorffii]
          Length = 581

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 136/359 (37%), Positives = 207/359 (57%), Gaps = 17/359 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--ML 60
           F D+GL   V+  + + G   PTPIQ++ +P +L   D+ G+A TG+GKT +FVLP  ML
Sbjct: 145 FKDMGLPKSVLRKLKEKGVKHPTPIQVQGLPAILSGRDMIGVAFTGSGKTLAFVLPLIML 204

Query: 61  TILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
            + E+ R+R++    P  LIL P+RELA Q  D  E++    N      L   L IGG  
Sbjct: 205 ALKEEERSRLKGGEGPVGLILCPSRELAKQTFDVIEEFVSMVNSSRCCHLRAMLCIGGTG 264

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
             +Q + + RG  +++ TPGR+ D   + K+ +   + L +DEADR+ D GF   I+ + 
Sbjct: 265 MRSQLEAIRRGVHIVVATPGRLNDMLEKKKMNLERCKYLTLDEADRLCDSGFEDDIRKVM 324

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
             + F RQTLLFSATM  ++Q+ +   L  P  + VN   + A +++   V    ++ K+
Sbjct: 325 DHLKFQRQTLLFSATMPRKIQEFARGALVKP--VVVNVARAGAASLD---VVQQVEFVKQ 379

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IFC  K  V ++   L  +G  V +IHG  DQ  R   ++ 
Sbjct: 380 EAEMVYLLECLQQTPPPVLIFCESKGEVDSIYEYLVLKGVEVVSIHGGKDQEERQDAITK 439

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           FK+G   ++VA+D+A++GLD P + HV N+D+P+  ENY+HRIGRTGR G+ G A T +
Sbjct: 440 FKQGRKDVLVATDVASKGLDFPSIQHVINYDMPSEIENYVHRIGRTGRCGKTGIATTFI 498


>gi|295664398|ref|XP_002792751.1| ATP-dependent RNA helicase drs1 [Paracoccidioides brasiliensis
           Pb01]
 gi|226278865|gb|EEH34431.1| ATP-dependent RNA helicase drs1 [Paracoccidioides brasiliensis
           Pb01]
          Length = 835

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 139/364 (38%), Positives = 201/364 (55%), Gaps = 7/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L  
Sbjct: 315 FQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILER 374

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++ 
Sbjct: 375 LLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKR 434

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 435 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTM 494

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMT+ + K+    L  P R+ VN    T  T+   FV     +  K+   L  L +
Sbjct: 495 LFSATMTNTIDKLIRVGLNRPVRLMVNAQKQTVGTLVQEFVRLRPGREDKRLGYLVTLCK 554

Query: 241 S--QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +D +   IIF   KK    +       G     +HG++ Q  R+K + +F++G +  
Sbjct: 555 TVYKDRV---IIFFRAKKEAHRVRIIFGLFGLKAAELHGSMSQEQRIKSVESFRDGKVSF 611

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + 
Sbjct: 612 LLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVK 671

Query: 359 AIEK 362
           A  K
Sbjct: 672 AAVK 675


>gi|198424291|ref|XP_002131481.1| PREDICTED: similar to ATP-dependent RNA helicase DDX3X (DEAD box
           protein 3, X-chromosomal) (Helicase-like protein 2)
           (HLP2) (DEAD box, X isoform) [Ciona intestinalis]
          Length = 733

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 139/374 (37%), Positives = 208/374 (55%), Gaps = 26/374 (6%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL---------------EK 65
           Y  PTP+Q   IP++  + D+   AQTG+GKTA+F+LP L+ L               ++
Sbjct: 275 YTVPTPVQKYAIPIIQSKRDLMACAQTGSGKTAAFLLPTLSQLYTKGPGESLKATTSHQR 334

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
           GR ++  P  L+L PTRELA+Q+ D   K+    ++   ++ GG    AQ + L+RG  +
Sbjct: 335 GRRKL-FPLALVLSPTRELASQIYDEARKFAYRSHVRPCVVYGGADVGAQMRDLDRGCHI 393

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----RQTL 181
           L+ TPGR++D   RGK+ +  I  +++DEADRMLDMGF P I+ I      T    RQTL
Sbjct: 394 LVATPGRLVDFIERGKVGLCYIRFVILDEADRMLDMGFEPQIRRIVEQSDMTHKGERQTL 453

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT   E+Q ++ +FL N   + V    ST+  I    V  +    +K   L  L+ +
Sbjct: 454 MFSATFPKEIQILARDFLNNYIFLAVGRVGSTSTNITQKVV--WVDEEEKHKFLLDLVNA 511

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D+    +IF   KK    L   L  + +   +IHG+  QR R + L  F+ G   ++VA
Sbjct: 512 TDSKSLTLIFTETKKGADALDEFLYTRKYKSTSIHGDRTQREREEALLAFRTGEYPILVA 571

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI-DAI 360
           + +AARGLDIP+V HV NFD+P+  + Y+HRIGRTGR G  G A +    +++  + D +
Sbjct: 572 TAVAARGLDIPNVRHVINFDLPSDVDEYVHRIGRTGRVGNIGLATSFFNNKNVNIVKDLV 631

Query: 361 EKLIEKKVD---WL 371
           + LIE   +   WL
Sbjct: 632 DLLIEASQEVPPWL 645


>gi|331234891|ref|XP_003330106.1| ATP-dependent RNA helicase DED1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309309096|gb|EFP85687.1| ATP-dependent RNA helicase DED1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 660

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 135/364 (37%), Positives = 207/364 (56%), Gaps = 23/364 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F++  L P ++  +  A Y  PTP+Q  ++P+V    D+   AQTG+GKT  F+ P++
Sbjct: 175 LEFSNSPLDPHLLANIKLARYKTPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPII 234

Query: 61  TI-LEKGR----------------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV 103
           +    KG                  R   P  LIL PTREL +Q+ D   K+     +  
Sbjct: 235 SAAFAKGPLPTSGMQAQNPRGGYGKRKAFPTALILAPTRELVSQIHDEARKFTYRSWVRP 294

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163
           A++ GG     Q +++E G D+L  TPGR++D   RG++ ++NI  LV+DEADRMLDMGF
Sbjct: 295 AVVYGGADMNTQLRQIESGCDLLSATPGRLVDFIERGRISLSNIRFLVLDEADRMLDMGF 354

Query: 164 IPYIQNITSL--VP--FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
            P I+ I +   +P    RQTL+FSAT   ++Q ++++FL++   + V    ST+E I  
Sbjct: 355 EPQIRRIVTGEDMPGVHERQTLMFSATFPRDIQMLAKDFLKDYIFLSVGRVGSTSENITQ 414

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                Y + + K ++L  +L S  T    ++F   K+    L + L +  F+  +IHG+ 
Sbjct: 415 KI--EYVEDADKRSVLLDVLSSMPTGGLTLVFVETKRMADMLENFLIQSNFAATSIHGDR 472

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            QR R + L  F+     +MVA+ +AARGLDIP+V HV N+D+PN  ++Y+HRIGRTGRA
Sbjct: 473 SQRERERALETFRSSRTPVMVATAVAARGLDIPNVTHVVNYDLPNDIDDYVHRIGRTGRA 532

Query: 340 GRHG 343
           G  G
Sbjct: 533 GNTG 536


>gi|126306068|ref|XP_001381369.1| PREDICTED: similar to Chain C, Structure Of The Human Exon Junction
           Complex With A Trapped Dead-Box Helicase Bound To Rna
           [Monodelphis domestica]
          Length = 404

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 133/379 (35%), Positives = 211/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + +  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 33  FDLVGLREDLLRGIYAYGFEKPSAIQQRALKQIIKGRDVIAQSQSGTGKTATFSISVLQC 92

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       ++L+RG
Sbjct: 93  LD---IQVRETQALILAPTRELAVQIQKVLLALGDYMNVQCHACIGGTNVGDDIRQLDRG 149

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD+MLD GF   I ++   +P + Q +L
Sbjct: 150 QHVVAGTPGRVFDMIRRRSLTTRAIKMLVLDEADQMLDKGFKEQIYDVYRYLPPSIQVVL 209

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 210 ISATLPHEILEMTTKFMTDPIRILVRRDELTLEGIKQFFVAVEREEWKFDTVCDLYDSL- 268

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V +IHG++  R R  I+  F+ G  +++
Sbjct: 269 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSIHGDMPSRERKFIMKEFRSGVNRVL 324

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 325 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 384

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 385 IEQYYSTQIDEMPMNVADL 403


>gi|126699799|ref|YP_001088696.1| ATP-dependent RNA helicase [Clostridium difficile 630]
 gi|115251236|emb|CAJ69067.1| ATP-dependent RNA helicase [Clostridium difficile]
          Length = 497

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 218/371 (58%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L+ K++ ++   GY  P+ +Q + IP +L+  ++   ++TG+GKTASF +P+   
Sbjct: 5   FEKFKLNEKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLC-- 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E         + LI+ PTRELA QV D     G+   +  + + G    + Q  +L++ 
Sbjct: 63  -ENINVDYNNIQALIVVPTRELALQVKDEISDIGRLKKVRCSAIFGKQSIKDQIAELKQR 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NRG + + N++ LVIDEAD+M + GF+  ++ I   +P  +   L
Sbjct: 122 VHIVVATPGRILDHINRGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVSL 181

Query: 183 FSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           FSAT+ +E++ + E ++ +     IE N   +  +T +       A   +K  LL++L+ 
Sbjct: 182 FSATIDEEIKYICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYILLKELIY 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++  K+ IIFCN K+ V  L + + K+GF +  +H ++ Q  R+ ++ +FK     ++V
Sbjct: 242 SENP-KSVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQKFNILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +SD+A+RG+ I D+  V N+DVP   ENYIHRIGRTGR G  GKA T+V ++D K+I+ I
Sbjct: 301 SSDVASRGIHIDDISLVINYDVPQDKENYIHRIGRTGRKGNSGKAITIVTEKDEKYIENI 360

Query: 361 EKLIEKKVDWL 371
           E  I  K++ L
Sbjct: 361 ETYIGYKINEL 371


>gi|10039327|dbj|BAB13306.1| PL10-related protein CnPL10 [Hydra vulgaris]
          Length = 628

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 138/364 (37%), Positives = 209/364 (57%), Gaps = 20/364 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +  L   ++  +  A Y KPTP+Q  +IP++  + D+   AQTG+GKTA+F++P+L+ 
Sbjct: 173 FDEANLGEIILTNISLAHYTKPTPVQKNSIPIIKAKRDLMACAQTGSGKTAAFLVPILSR 232

Query: 62  ILE-----------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           I E           +G  + + P  L+L PTRELA+Q+ D   K+     +   ++ GG 
Sbjct: 233 IFEEGPFENPSNVRQGGKKKQYPIALVLAPTRELASQIYDESRKFVYRSCIRPCVVYGGA 292

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q + ++RG  +L+ TPGR++D   RGK+ +  I+ LV+DEADRMLDMGF P I+ I
Sbjct: 293 DVSTQMRDIDRGCHLLVATPGRLVDMIQRGKVGLECIKFLVLDEADRMLDMGFEPQIREI 352

Query: 171 TSL--VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                +P T  RQTL+FSAT   E+Q ++ +FL N   + V    ST+E I    V  + 
Sbjct: 353 VEKCDMPRTGERQTLMFSATFPKEIQMLARDFLDNYIFLAVGRVGSTSENITQKVV--WV 410

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK--QGFSVCAIHGNIDQRSR 284
           +   K   L  LL +       ++F   K+    L   L +  + +   +IHG+  QR R
Sbjct: 411 EEHDKREFLLDLLNASGPDSLTLVFVETKRGADALEQFLFRCPENYHATSIHGDRHQRER 470

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + L++F+ GT  ++VA+ +AA+GLDIP+V HV NFD+P+  E Y+HRIGRTGRAG  G 
Sbjct: 471 EQALASFRVGTTPILVATAVAAKGLDIPNVKHVINFDMPSDIEEYVHRIGRTGRAGHTGL 530

Query: 345 AFTL 348
           A + 
Sbjct: 531 AISF 534


>gi|325115216|emb|CBZ50771.1| dead box polypeptide 27, related [Neospora caninum Liverpool]
          Length = 462

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 135/375 (36%), Positives = 211/375 (56%), Gaps = 13/375 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++  +V   G+  PT IQ + +P  LQ  D+  +A+TG+GKTA+F LP   I
Sbjct: 35  FSSLGLCAELCASVSTLGWRAPTAIQSEVLPYALQGRDIIALAETGSGKTAAFGLP---I 91

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++   R +    LIL PTREL  Q++      G +  +TV  L+GG+    Q   L + 
Sbjct: 92  LQQLLQRTQRFYALILAPTRELCLQISQQMLAMGGSLGVTVVTLVGGLDHNTQAIALAKK 151

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLV--PFTRQ 179
             V++ +PGR++DH  + K   + ++++LV+DEADR+L + F   +Q +   V  P  RQ
Sbjct: 152 PHVVVGSPGRVVDHLQQTKGFSLKSVKVLVLDEADRLLSLDFDAALQVLLEHVGSPAERQ 211

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQ 237
           T+LFSATMT ++ K+ +  L+ P ++EVN+    A  ++  F  V    +++   A L  
Sbjct: 212 TMLFSATMTTKVSKLQKASLKKPVKLEVNSKYDVASLLQQHFLLVPFKLKHTHLAAALLH 271

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L  S     + I+F N   N   +   L   GF    +HG + Q  R+  L+ F+     
Sbjct: 272 LSPS-----SVIVFTNTCANARTIALFLRHLGFQSVCLHGKMTQPQRIGALTKFRAAETS 326

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+++ +RGLDIP V  V NFDVP  ++ YIHR+GRT RAGR G+A T+V + D++  
Sbjct: 327 CLVATEVGSRGLDIPHVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALTIVTQYDVEAY 386

Query: 358 DAIEKLIEKKVDWLN 372
             IE  + +K+D L 
Sbjct: 387 QRIEHALGQKLDELT 401


>gi|189193873|ref|XP_001933275.1| ATP-dependent RNA helicase DED1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187978839|gb|EDU45465.1| ATP-dependent RNA helicase DED1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 686

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 139/378 (36%), Positives = 215/378 (56%), Gaps = 21/378 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK------------- 65
           +GY  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L    +             
Sbjct: 213 SGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQAFQNGPSPPPQQAQGG 272

Query: 66  -GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
            GR R   P +L+L PTREL +Q+ D   K+     +   ++ GG    +Q +++ERG D
Sbjct: 273 YGRQRKAYPTSLVLAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 332

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--VPFT--RQT 180
           +L+ TPGR++D   RG++ + +I+ LV+DEADRMLDMGF P I+ I     +P T  RQT
Sbjct: 333 LLVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPTAGRQT 392

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT   ++Q ++ +FL++   + V    ST+E I       Y +   K ++L  +L 
Sbjct: 393 LMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKI--EYVEDVDKRSVLLDILH 450

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +     + +IF   K+   +L   L  QGF   +IHG+  QR R K L  F+ G   ++V
Sbjct: 451 THGAGLS-LIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRTGRCPILV 509

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G A     + +   +  +
Sbjct: 510 ATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDL 569

Query: 361 EKLIEKKVDWLNGDLSSL 378
            +L+++    + G L S+
Sbjct: 570 LELLKEANQEVPGFLESI 587


>gi|13399860|pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
           Hyperthermophile Methanococcus Jannaschii
 gi|13399861|pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
           Hyperthermophile Methanococcus Jannaschii
          Length = 367

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 130/362 (35%), Positives = 215/362 (59%), Gaps = 14/362 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60
           +F +L LS  ++ A+ + G+ KPT IQ K IPL L   +++   A+TG+GKTASF +P++
Sbjct: 7   NFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ++ +          +IL PTRELA QVAD  E    N NL +A + GG     Q K L 
Sbjct: 67  ELVNENNG----IEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL- 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           + A++++ TPGRILDH NRG L + N++  ++DEAD  L+ GFI  ++ I +     ++ 
Sbjct: 122 KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEXLNXGFIKDVEKILNACNKDKRI 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT   E+  +++ +  +   I+    ++    IE  +V      +++   L +LL+
Sbjct: 182 LLFSATXPREILNLAKKYXGDYSFIKAKINAN----IEQSYVEV--NENERFEALCRLLK 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++    G++FC  K++   L   L   GF   AIHG++ Q  R K++  FK+  I++++
Sbjct: 236 NKEFY--GLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILI 293

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ +RG+D+ D+  V N+ +P   E+Y HRIGRTGRAG+ GKA +++ + + K +  I
Sbjct: 294 ATDVXSRGIDVNDLNCVINYHLPQNPESYXHRIGRTGRAGKKGKAISIINRREYKKLRYI 353

Query: 361 EK 362
           E+
Sbjct: 354 ER 355


>gi|321467260|gb|EFX78251.1| hypothetical protein DAPPUDRAFT_213150 [Daphnia pulex]
          Length = 487

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 134/365 (36%), Positives = 208/365 (56%), Gaps = 19/365 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +      V+  +   G+ +PT IQ +  P+ L   ++ GIAQTG+GKT ++ LP +  
Sbjct: 62  FDEASFPDYVMTEIRRQGFKEPTSIQAQGWPIALSGSNMVGIAQTGSGKTLAYTLPAIVH 121

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  LIL PTRELA Q++   + +G +  +    + GG P   Q 
Sbjct: 122 INHQPYLEPGDG----PIALILAPTRELAQQISSTAKDFGSSSRIRNTCVFGGAPKGPQL 177

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + +ERG +++I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +  
Sbjct: 178 RDIERGVEIMIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 237

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKK 231
            RQTL++SAT   E+++++E FL +  +I V + + +A     + I+ C    + + +K 
Sbjct: 238 DRQTLMWSATWPKEVRQLAEEFLTDYIQINVGSLTLSANHNILQIIDVC--QEHEKETKL 295

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LLQ+ + ++D  K  IIF   K+ V ++  ++ + G+    IHG+  Q  R  +L+ F
Sbjct: 296 MTLLQE-IGAEDENKT-IIFAETKRKVDSITRAMRRDGWPAMCIHGDKAQPERDWVLNEF 353

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G   ++VA+D+AARGLD+ DV  V NFD PN +E+Y+HRIGRTGR+ R G A+T    
Sbjct: 354 RSGKAPILVATDVAARGLDVDDVKFVINFDYPNCSEDYVHRIGRTGRSQRTGTAYTFFTP 413

Query: 352 EDIKH 356
            + K 
Sbjct: 414 NNSKQ 418


>gi|312219930|emb|CBX99872.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1226

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 138/377 (36%), Positives = 207/377 (54%), Gaps = 33/377 (8%)

Query: 3    FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
            F + G    V+  V   G+ KPT IQ +  P+ L   DV G+A+TG+GKT ++ LP +  
Sbjct: 819  FDEAGFPSYVMNEVKAQGFAKPTAIQAQGWPMALSGRDVVGVAETGSGKTLTYCLPAIVH 878

Query: 62   -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 +L  G      P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 879  INAQPLLAPGDG----PIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQI 934

Query: 117  KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            + L RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 935  RDLARGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 994

Query: 177  TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             RQT ++SAT   E+++++ ++ QN   I+VN  S                       +Q
Sbjct: 995  DRQTCMWSATWPKEVRQLASDY-QN-DWIQVNLGSMDLSAHHR---------------IQ 1037

Query: 237  QLLQSQDTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
            Q+++  +T+ +      +IF   K+    +   L + G+   +IHG+  Q  R  +L+ F
Sbjct: 1038 QIVEHLETIMSDKENKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLNEF 1097

Query: 292  KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
            K G   +MVA+D+A+RG+D+ ++ HVFN+D PN +E+Y+HRIGRTGRAG +G A TL   
Sbjct: 1098 KTGKSPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYVHRIGRTGRAGANGTAITLFTT 1157

Query: 352  EDIKHI-DAIEKLIEKK 367
            E+ K   D ++ L E K
Sbjct: 1158 ENSKQARDLVQILTESK 1174


>gi|242007312|ref|XP_002424485.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212507903|gb|EEB11747.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 669

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 140/369 (37%), Positives = 207/369 (56%), Gaps = 4/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + LS  ++ A+    +  PTPIQ   IP+ L   D+CG A TGTGKTA+++LP+L  
Sbjct: 157 FYQMNLSRPLMKAIAAMNFSHPTPIQCAAIPVALLGRDICGCAATGTGKTAAYMLPILER 216

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L K +  + + R L+L PTREL  QV    ++  K   + + L +GG+  + Q   L +
Sbjct: 217 LLYKPQGSLSITRVLVLVPTRELGVQVIQVAKQLSKFTTIEIGLAVGGLDVKVQEAFLRK 276

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++DH  N     +++IEILV+DEADRMLD  F   ++ I      TRQT
Sbjct: 277 QPDIVIATPGRLIDHLKNSLGFSLDSIEILVLDEADRMLDEYFAEQMKEIVRQCSRTRQT 336

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLL 239
           +LFSATMT  ++ ++   L NP +I V++  S    +   F+     +   K A+L  L+
Sbjct: 337 MLFSATMTTAVEDLASVSLSNPVKIFVDSNQSVTNNLRQEFIRIRKGREGDKEAVLAALV 396

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +    N IIF   K     L   L         +HGN+ Q  R+  L  FK G + ++
Sbjct: 397 R-RTFRANCIIFVATKSQAHKLRILLGFLNMKAGELHGNLRQPERLDTLKRFKNGELDIL 455

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V N+D+P   E+YIHR+GRT RAGR G + +L  + + K +  
Sbjct: 456 VATDVAARGLDISGVKTVINYDLPMTFEHYIHRVGRTARAGRSGISVSLACESERKLVKE 515

Query: 360 IEKLIEKKV 368
           I K  E+ V
Sbjct: 516 IVKKAERPV 524


>gi|116668333|pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
           A Resolution
          Length = 374

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 133/379 (35%), Positives = 209/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 3   FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQC 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA QV       G   N+     IGG       +KL+ G
Sbjct: 63  LD---IQVRETQALILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTNVGEDIRKLDYG 119

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 120 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 179

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 180 ISATLPHEVLEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 239 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 295 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIRVLRD 354

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 355 IEQYYSTQIDEMPMNVADL 373


>gi|225456912|ref|XP_002277894.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 611

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 130/364 (35%), Positives = 208/364 (57%), Gaps = 9/364 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM--PRTLI 77
           G+V+PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP L  +      VR   P  L+
Sbjct: 208 GFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPPLVRGEGPIVLV 267

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           L PTRELA Q+ +   K+G    +    + GG P   Q + L+RG +++I TPGR++D  
Sbjct: 268 LAPTRELAVQIQEEALKFGSFTKIRSTCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDML 327

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
                 +  +  LV+DEADRMLDMGF P I+ I S +   RQTL +SAT   E++ ++  
Sbjct: 328 EAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLYWSATWPREVETLARQ 387

Query: 198 FLQNPKRIEVNTPSSTA-ETIEHC--FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           FL+NP ++ + +    A ++I+     V    +Y++   LL++++     +    IF   
Sbjct: 388 FLRNPYKVIIGSQDLKANQSIQQVVEVVTETEKYNRLIRLLKEVMDGSRIL----IFMET 443

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           KK    +   +   G+   +IHG+ +Q  R  +L+ FK G   +M A+D+AARGLD+ D+
Sbjct: 444 KKGCDQVTRQMRMDGWPSLSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDI 503

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
             V N+D P+  E+Y+HRIGRTGRAG  G A T     + K    + K++++    ++  
Sbjct: 504 KCVINYDFPSSLEDYVHRIGRTGRAGAKGTAITFFTHSNAKFARDLIKILQEAGQVVSPA 563

Query: 375 LSSL 378
           LS++
Sbjct: 564 LSAM 567


>gi|195441137|ref|XP_002068383.1| GK13754 [Drosophila willistoni]
 gi|194164468|gb|EDW79369.1| GK13754 [Drosophila willistoni]
          Length = 839

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 133/359 (37%), Positives = 205/359 (57%), Gaps = 15/359 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G   +++ AV  A Y +PT IQ + +P  L   D+ GIA+TG+GKTA+F+ P+L  
Sbjct: 303 FGHFGFDDQLIKAVRKAEYTQPTSIQAQAVPCALAGRDIIGIAKTGSGKTAAFIWPLLMH 362

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L   R       P  LIL PTREL+ Q+ +  +++GK YNL V    GG     Q+K LE
Sbjct: 363 LMDQRELKAGEGPIGLILAPTRELSLQIYNEAKRFGKVYNLRVVCCYGGGSKWEQSKALE 422

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA++++ TPGR++D        +  +  LV+DEADRM  MGF P +++I   V   RQT
Sbjct: 423 QGAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICQHVRPDRQT 482

Query: 181 LLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTAETIEHCFVATYAQYSKK---CAL 234
           LLFSAT    +++++ + L +P RI   E+N   +  +  +  +V    Q       C L
Sbjct: 483 LLFSATFKRRIERLARDVLTDPIRIVQGELN--EANQDVTQAVYVLPNPQQKWNWLLCHL 540

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           ++ L +      + +IF  +K +   + H L  + F+   +HG++DQ  R K++  FK  
Sbjct: 541 VKFLAEG-----SCLIFVTKKADAETVAHQLLVKEFNCLLLHGDMDQADRNKVIMQFKRK 595

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
              +++A+D+AARGLDIP + +V N+D+    + + HRIGRTGRAG  G A TLV ++D
Sbjct: 596 ECDILIATDVAARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAHTLVTEKD 654


>gi|19113831|ref|NP_592919.1| ATP-dependent RNA helicase Dbp10 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|1175401|sp|Q09719|DBP10_SCHPO RecName: Full=ATP-dependent RNA helicase dbp10
 gi|914885|emb|CAA90465.1| ATP-dependent RNA helicase Dbp10 (predicted) [Schizosaccharomyces
           pombe]
          Length = 848

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 132/390 (33%), Positives = 215/390 (55%), Gaps = 35/390 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  +GL+  ++ A+   G+  PTPIQ KTIPL+L+  DV G+A+TG+GKTA+FV+PM+ 
Sbjct: 70  NFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIE 129

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+   A     R LIL P RELA Q     + + K  +L    ++GG+  E Q   L  
Sbjct: 130 HLKSTLANSNT-RALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSG 188

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR L      KL +++IE +V DEADR+ +MGF   +  I   +P +RQTL
Sbjct: 189 KPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTL 248

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           LFSAT+   L   ++  LQ+P  + ++  S  +  ++  F  V T  + +    +LQ ++
Sbjct: 249 LFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAEREAALLCILQDII 308

Query: 240 Q--------------------------------SQDTMKNGIIFCNQKKNVVNLCHSLEK 267
           +                                   +  + ++F   K +V  +   L +
Sbjct: 309 KLPLKDNVRPREIGNVNNPKKRKRALELALKGSESGSPDSTLVFVPTKHHVEYVSELLVQ 368

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            G+SV  I+G++DQ +R+  ++NF+ G   L+V +D+A+RG+DIP + +V N+D P + +
Sbjct: 369 AGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPK 428

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++HR+GRT RAGR G A++LV  ED  ++
Sbjct: 429 VFVHRVGRTARAGRTGWAYSLVRAEDAGYL 458


>gi|66825831|ref|XP_646270.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           discoideum AX4]
 gi|74897412|sp|Q55D61|IF4A_DICDI RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=ATP-dependent RNA helicase tifA
 gi|60474009|gb|EAL71946.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           discoideum AX4]
          Length = 405

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 210/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  + + G+ KP+ IQ + I  +++  D    AQ+GTGKTA+F +  L  
Sbjct: 34  FESMGLREELLRGIFNYGFEKPSAIQQRAILPIIKGRDTIAQAQSGTGKTATFSIGALQC 93

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E     VR P+ LIL PTRELA Q+        +  N+ V   +GG       KKLE G
Sbjct: 94  VE---VNVRSPQVLILSPTRELAQQIQKVALALSEFMNIQVHACVGGKNLSDDVKKLETG 150

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+LD   R  L   +I+++++DEAD ML +GF   I ++   +P   Q +L
Sbjct: 151 VHIVSGTPGRVLDMITRKSLPTRHIKMMILDEADEMLSLGFQQQINDVYRYLPNGTQIVL 210

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+T ++  ++E F+  P RI +     T + I+  FV+   +   +   C +   L 
Sbjct: 211 VSATLTQDVVSMTEKFMTKPVRILLKRDELTLDGIKQFFVSVEKEDWKFGTLCDIYDSL- 269

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN KK V  L   +    F+V ++HG++ Q+ R +I+ +F+ G  +++
Sbjct: 270 ----TITQAVIFCNTKKKVDQLTEQMRDANFTVASMHGDMVQKEREEIIKSFRSGENRVL 325

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V   DI+ +  
Sbjct: 326 ITTDILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAINFVKNSDIRILRD 385

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  + +S+
Sbjct: 386 IEQFYSTQIDEMPVNFASI 404


>gi|330448349|ref|ZP_08311997.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492540|dbj|GAA06494.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 446

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 207/373 (55%), Gaps = 5/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL P+++  +    + + T IQ   IP+ +   D+   ++TG+GKT +F+LP +
Sbjct: 1   MHFKDLGLDPRLLKKINHLAFDRATEIQHTAIPVAIAGKDILASSKTGSGKTLAFLLPAM 60

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + + +   R  PR +IL PTRELA QV                L++GG  F  Q K L
Sbjct: 61  QRMYRSKPFTRRDPRVVILTPTRELAKQVFAQLRTLNAGTPYDGTLIVGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
                 ++ TPGR+ DH       ++ +E+L++DEADRMLD+GF P ++ I       R 
Sbjct: 121 RNDPMFVVATPGRLADHLEHRSTHLDGLEMLILDEADRMLDLGFAPELRRINEAANHRRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+ + E+ +++   L NPKRI +   +   + I   F+        K ALL +
Sbjct: 181 QTLMFSATLDNQEVIEIASEMLDNPKRISIGHSAEEHKDITQRFILC-DHLDHKQALLDK 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L++ D     IIF   + +   L + L ++     A+ GN++Q  R  I+S F+    +
Sbjct: 240 VLETTD-YNQVIIFTATRADTDRLTNELNERKLKAVALSGNLNQNQRNSIMSQFERNCHK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLDI +V  V NFD+P  AE Y+HR+GRTGRAG  G A +LV  +D K  
Sbjct: 299 ILVTTDIASRGLDIDNVSLVINFDMPKHAEEYVHRVGRTGRAGNKGDAVSLVGPKDWKSF 358

Query: 358 DAIEKLIEKKVDW 370
             +E  + +++++
Sbjct: 359 KNVEAFLNQRIEF 371


>gi|297159148|gb|ADI08860.1| ATP-dependent RNA helicase [Streptomyces bingchenggensis BCW-1]
          Length = 652

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 127/347 (36%), Positives = 191/347 (55%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL  ++V  +   G   P PIQ  TIP  +   D+ G  +TG+GKT SF LP+LT 
Sbjct: 48  FGDLGLPEQIVRKLAQNGVTTPFPIQAATIPDAMAGSDILGRGRTGSGKTLSFGLPLLTT 107

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G    + PR LIL PTRELA QV+D  + YG    L + ++ GG     Q   LERG
Sbjct: 108 LAGGHTEKKRPRGLILTPTRELAMQVSDALQPYGDVLGLKLKVVCGGTSMGNQIYALERG 167

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+ D  +RG   ++ +++ V+DEAD+M DMGF+P +  I   VP   Q LL
Sbjct: 168 VDILVATPGRLRDIIDRGAASLDKVQVAVLDEADQMADMGFLPEVTEILDQVPQGGQRLL 227

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ +E+  + + +L +P   EV+  +    T+ H  +       K  A +   + ++
Sbjct: 228 FSATLENEIDTLVKRYLVDPITHEVDPSAGAVSTMTHHVLVV---KPKDKAPVTAAIAAR 284

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L   G    A+HG + Q +R + L++FK+G + ++VA+
Sbjct: 285 KGRT--IIFVRTQLGADRVAEQLRDAGVRAEALHGGMTQGARTRTLADFKDGYVNVLVAT 342

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+ +  +  V N D     ++Y+HR GRT RAG+ G   +L 
Sbjct: 343 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGQSGTVVSLA 389


>gi|223041453|ref|ZP_03611656.1| ATP-dependent RNA helicase RhlB [Actinobacillus minor 202]
 gi|223017711|gb|EEF16118.1| ATP-dependent RNA helicase RhlB [Actinobacillus minor 202]
          Length = 404

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 136/367 (37%), Positives = 220/367 (59%), Gaps = 9/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D  +   V+ A+   G+   TPIQ KT+P+ L+ +D+ G AQTGTGKT +F++     
Sbjct: 10  FIDFSIHENVLAALESKGFEFCTPIQAKTLPITLKGNDIAGQAQTGTGKTMAFLIATFHH 69

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  + ++    PR LIL PTRELA Q+A + E   K+ +L +AL  GG  +E Q + +E
Sbjct: 70  LLTNECQSNKNQPRALILAPTRELAVQIASDAELLVKHSDLKLALAYGGDGYEKQVEAIE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ- 179
           +G D+L+ T GR++D+  +G + ++ ++++V+DEADRM D+GFI  I+ +    P   Q 
Sbjct: 130 KGVDILVGTTGRVIDYVKQGIINLDCVQVIVLDEADRMFDLGFIKDIRYLMRKCPKPEQR 189

Query: 180 -TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237
            T+LFSAT++  +++++   + N   +E+     T   I E  F   Y     K ALL  
Sbjct: 190 LTMLFSATLSPRVRELAYEDMNNASYVEIEPLQRTGHRIKEELF---YPSNEDKMALLLT 246

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +   +  +IF N K+    +   L   G  V  + G+I Q+ R+ +L +F +G + 
Sbjct: 247 LLEEE-WPERCMIFANTKQKCEEIWQYLLADGHRVGLLTGDIAQKKRLALLDSFTKGELD 305

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP+V HVFN+D+P+  E+Y+HRIGRTGRAG+ G + +   +    ++
Sbjct: 306 ILVATDVAARGLHIPEVTHVFNYDLPDDREDYVHRIGRTGRAGQSGHSISFACERYAVNL 365

Query: 358 DAIEKLI 364
            AIE+ I
Sbjct: 366 PAIEEYI 372


>gi|67967591|dbj|BAE00278.1| unnamed protein product [Macaca fascicularis]
          Length = 529

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 139/363 (38%), Positives = 213/363 (58%), Gaps = 11/363 (3%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE----- 64
           P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT  +++P    L+     
Sbjct: 132 PEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLDLQPTL 191

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           KG+ R R P  L+L PTRELA QV     KY     L    + GG   + Q ++L +G D
Sbjct: 192 KGQ-RNR-PGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIEELRKGVD 248

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           ++I TPGR+ D      + + NI  LV+DEAD+MLDMGF P I  I   V   RQT++ S
Sbjct: 249 IIIATPGRLNDLQMNNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTS 308

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           AT    + ++++++L+ P  + V T    A  +++   + T  +  +K + +   LQ+  
Sbjct: 309 ATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEE--EKWSHMHTFLQNMS 366

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
           +    I+F ++K    +L   L     S+ ++HG+ +QR R K L NFK G +++++A+D
Sbjct: 367 STDKVIVFVSRKAVADHLSSDLILGNISIESLHGDREQRDREKALENFKTGKVRILIATD 426

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           LA+RGLD+ DV HV+NFD P   E Y+HRIGRTGRAGR G + T + + D +    +  +
Sbjct: 427 LASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINI 486

Query: 364 IEK 366
           +E+
Sbjct: 487 LER 489


>gi|322700629|gb|EFY92383.1| ATP-dependent RNA helicase dbp-2 [Metarhizium acridum CQMa 102]
          Length = 552

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 130/361 (36%), Positives = 199/361 (55%), Gaps = 11/361 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 138 FDEAGFPRYVLDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 197

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+G++  +    + GG+P   Q 
Sbjct: 198 INAQPLLAPGDG----PIVLVLAPTRELAVQIQQEITKFGRSSRIRNTCVYGGVPKGPQI 253

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 254 RDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIEQIRP 313

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E++ ++ +F  +  ++ + +   +A       V   +   K+  +++
Sbjct: 314 DRQTLMYSATWPKEVRAMAADFQTDFIQVNIGSMDLSANHRITQIVEVVSDMEKRDRMIK 373

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L Q  +  +N I IF   K+   ++   L + G+   +IHG+  Q  R  +L  FK G 
Sbjct: 374 HLEQVMENKENKILIFVGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGK 433

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+A+RG+D+ ++ HV N+D PN +E+YIHRIGRTGRAG  G A T    ++ K
Sbjct: 434 SPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNQK 493

Query: 356 H 356
            
Sbjct: 494 Q 494


>gi|270005640|gb|EFA02088.1| hypothetical protein TcasGA2_TC007723 [Tribolium castaneum]
          Length = 447

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 146/390 (37%), Positives = 212/390 (54%), Gaps = 8/390 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L+P ++      G   PTPIQ   IP +L   D  G A+TG+GKT +F LP+L  
Sbjct: 6   FDKLQLNPWIIRQCATIGVRSPTPIQTNCIPPILAGRDCIGAAKTGSGKTLAFALPILQK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     LIL PTRELA Q+AD F   GK  NL   +++GG+    Q K L R 
Sbjct: 66  LCEDPYGIF---ALILTPTRELAFQIADQFAVIGKVMNLRHCVIVGGMDMVVQGKDLARK 122

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++ TPGR+ DH         N +  LV+DEADR+L   F   I+ I   +P  RQ L
Sbjct: 123 PHIVVATPGRLADHLESCNTFNFNKLRFLVLDEADRLLGGHFDEQIKTIFQALPKERQNL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT+TD L+K+ +   ++    E     +T E +E  +V        K A L + +++
Sbjct: 183 FFSATITDTLEKLKDVTGKDVFFYEAPAEVATVEQLEQNYV--LCPKDVKDAYLVETIRT 240

Query: 242 QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +G  +IF N  KN   L  +L + GF   A+H  + Q+ R+  L+ FK  TI+++
Sbjct: 241 YRATNDGNILIFTNTCKNCQVLSMTLNEVGFENVALHAMMKQQQRLAALAKFKSNTIKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLDIP V  V N ++P   + YIHR+GRT RAGR+GKA +LV   DIK + A
Sbjct: 301 LATDVASRGLDIPTVQLVINHNIPKIPKEYIHRVGRTARAGRNGKAISLVTPYDIKLLQA 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
           IE+ I  K+     D S +     +I + +
Sbjct: 361 IEQHINTKLTEFKLDDSEVGKIFTQISVTK 390


>gi|91786555|ref|YP_547507.1| ATP-dependent RNA helicase DbpA [Polaromonas sp. JS666]
 gi|91695780|gb|ABE42609.1| ATP-dependent RNA helicase DbpA [Polaromonas sp. JS666]
          Length = 468

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 135/362 (37%), Positives = 202/362 (55%), Gaps = 6/362 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY+  TPIQ  ++P+ L   D+   A+TG+GKTA+F L +L  L   R  V+    ++L 
Sbjct: 25  GYLSMTPIQAASLPVALLGKDLIAQAKTGSGKTAAFGLALLANLNARRFAVQ---AMVLC 81

Query: 80  PTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N+ V  L GG+P   Q   L+ GA +++ TPGRI+DH  
Sbjct: 82  PTRELADQVATEIRRLARAEENIKVVTLCGGVPLRNQVSSLQNGAHIVVGTPGRIMDHLE 141

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           R  L ++ +  LV+DEADRMLDMGF   I  +    P  RQTLLFSAT  + + K+S+ F
Sbjct: 142 RETLDVDALNTLVLDEADRMLDMGFYNDIATVAKQCPDERQTLLFSATYPEGIAKLSQQF 201

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           ++ P+ I V      ++  +  +    +   +       LL +     + + FCN K   
Sbjct: 202 MKEPQTITVQAQHEKSKIRQRWYEVPESDRDEARLNAVALLLNHYRPASTLAFCNTKSQC 261

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             L   L+ +GFS  A++G ++QR R ++L  F   +  ++VA+D+AARGLDI  +  V 
Sbjct: 262 RALVAYLKNKGFSALALYGELEQRERDQVLVQFSNRSCSVLVATDVAARGLDISQLEMVI 321

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           N DV   AE +IHRIGRTGRA   G A +L + +++  +  IE+L   + +W    L+ L
Sbjct: 322 NVDVTPDAEVHIHRIGRTGRADEEGWAISLASMDEMGSVGKIEQLQNAESEW--HKLTEL 379

Query: 379 NP 380
            P
Sbjct: 380 TP 381


>gi|225680888|gb|EEH19172.1| ATP-dependent RNA helicase ded1 [Paracoccidioides brasiliensis
           Pb03]
          Length = 686

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 141/379 (37%), Positives = 213/379 (56%), Gaps = 20/379 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +  L   ++  ++ + Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 200 FTNPPLHEHLLSNIILSRYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSK 259

Query: 62  ILEK-----------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
            LEK           GR     P  LIL PTREL +Q+ D   K+     L   ++ GG 
Sbjct: 260 SLEKRGPDGDVPRGLGRQSKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVYGGA 319

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L++G +VL+ TPGR++D   RG++ +++I+ LV+DEADRMLDMGF P I+ I
Sbjct: 320 EMGNQLRQLDQGCNVLVATPGRLVDMMERGRISLSHIQYLVLDEADRMLDMGFEPQIRRI 379

Query: 171 T--SLVP--FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
              S +P    RQTL+FSAT   ++QK++E FL++   + V    ST+E I    +   +
Sbjct: 380 VQGSDMPDKHLRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRVIECDS 439

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              K  ALL  L    D+    ++F   K+    L   L        AIHG+  QR R +
Sbjct: 440 DKDKDSALLDILC--SDSTGLTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERER 497

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G   ++VA+ +AARGLDIP+V HV N+D+PN  ++Y+HRIGRTGRAG  G + 
Sbjct: 498 ALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGLST 557

Query: 347 TLVAKEDIKHIDAIEKLIE 365
              ++  IK+      +++
Sbjct: 558 AFFSR--IKNFKIARSMVD 574


>gi|66819701|ref|XP_643509.1| hypothetical protein DDB_G0275443 [Dictyostelium discoideum AX4]
 gi|74897315|sp|Q553B1|DDX46_DICDI RecName: Full=ATP-dependent RNA helicase ddx46; AltName:
           Full=ATP-dependent RNA helicase helB1; AltName:
           Full=DEAD box protein 46
 gi|60471516|gb|EAL69472.1| hypothetical protein DDB_G0275443 [Dictyostelium discoideum AX4]
          Length = 1151

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 142/393 (36%), Positives = 215/393 (54%), Gaps = 19/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A  GL+ KV   +    Y KPT IQ +TIP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 511 WAQAGLTEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMF-- 568

Query: 63  LEKGRARVRMPRT--------LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
               R  +  P++        LI+ PTRELA Q+    +K+ K   L  A + GG     
Sbjct: 569 ----RHILAQPKSAPGEGMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISE 624

Query: 115 QNKKLERGADVLICTPGRILDHF---NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           Q  +L+RGAD+++CTPGR++D     NR    +  +  LV+DEADRM DMGF P I  I 
Sbjct: 625 QIAELKRGADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIV 684

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
             +   RQT++FSAT   +++ V++  L  P  I     S  +  IE  FV      ++ 
Sbjct: 685 DSIRPDRQTIMFSATFPPKVENVAKKILNKPLEIIAGGRSIVSSDIEQ-FVEVRPTETRF 743

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L++ LL         +IF N+++   NL   L    +   ++HG+ DQ  R + +S+F
Sbjct: 744 RRLIE-LLSIWYHKGQILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDF 802

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K     +++A+ LA+RGLDI D+  V NFD P+  E+Y+HR+GRTGRAG  G A+T +  
Sbjct: 803 KNKVKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITP 862

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
           ++ +   +I K +E+    +  +L  LN   EK
Sbjct: 863 DEERFSSSIIKALEQSGSKVPDELRKLNDTYEK 895


>gi|269792122|ref|YP_003317026.1| DEAD/DEAH box helicase domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099757|gb|ACZ18744.1| DEAD/DEAH box helicase domain protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 558

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 132/372 (35%), Positives = 207/372 (55%), Gaps = 11/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTI--PLVLQRHDVCGIAQTGTGKTASFVLPML 60
           F    L  +++ A+   G+  P P+Q+  +  P ++   D+   A+TG+GKT +F LP+L
Sbjct: 7   FDQYPLRDELLSALRRKGFEHPMPVQVSMLEDPTLVD-GDLIVQAKTGSGKTLAFALPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +E G    R P+ L+L PTRELA Q A  F+  G +  + VA L+GG+  E Q K L 
Sbjct: 66  NRMEFGE---RSPKVLVLSPTRELALQTAREFQWLGYDLRIRVASLVGGMDMERQVKALR 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGR+LDH  RG    + +E LV+DE D MLD+GF   +++I + +    ++
Sbjct: 123 EGAAVVVGTPGRVLDHIRRGTFRADLVESLVLDEGDHMLDLGFKDELEDIMAAMTQVERS 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIE-VNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LFSATM +E+  +++ +L  P++I  V   +   + ++  ++    +  +   L   LL
Sbjct: 183 WLFSATMPEEVVTLAKQYLDAPRKISLVEDAAKHDDIVQRAYIIPARRRFE--GLANVLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   + GI+FC  K     L   L  +GF   A+HG++ QR R   L N + G  Q++
Sbjct: 241 FERP--RRGIVFCATKLQTQELAERLCDEGFKASALHGDMTQRERNMALENLRRGRSQIL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV  F +P   E +IHR GRTGRAG+ G+   L+   +      
Sbjct: 299 VATDVAARGLDISGVSHVIQFGLPGCLETFIHRSGRTGRAGQEGRNLILLTAREAGEFRG 358

Query: 360 IEKLIEKKVDWL 371
           + +    +V+WL
Sbjct: 359 MIRGTSLEVEWL 370


>gi|223462261|gb|AAI50863.1| Ddx3x protein [Mus musculus]
          Length = 661

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 219/392 (55%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 182 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 242 IYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 301

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 302 GGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 361

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 362 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 420

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + +   K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 421 -WVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 479

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 480 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 539

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 540 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 571


>gi|26344810|dbj|BAC36054.1| unnamed protein product [Mus musculus]
          Length = 411

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 209/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 40  FDTMGLRGDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQC 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 100 LD---IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 157 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 217 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 275

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 276 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 331

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 332 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 391

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 392 IEQYYSTQIDEMPMNVADL 410


>gi|332098054|gb|EGJ03027.1| ATP-independent RNA helicase dbpA [Shigella dysenteriae 155-74]
          Length = 432

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 134/360 (37%), Positives = 210/360 (58%), Gaps = 8/360 (2%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84
           TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   A +   + L+L PTREL
Sbjct: 2   TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID---ASLFQTQALVLCPTREL 58

Query: 85  AAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           A QVA    +  +   N  +  L GG PF  Q   L+    +++ TPGR+LDH  +G + 
Sbjct: 59  ADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVS 118

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT  + +  +S    ++P 
Sbjct: 119 LDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPL 178

Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
            IE+++ +     IE  F  T ++   K  LLQ+LL S     + ++FCN KK+   +C 
Sbjct: 179 AIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPSSCVVFCNTKKDCQAVCD 234

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
           +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V NF++ 
Sbjct: 235 ALNEVGQSALSLHGDLEQRDRDQTLVRFANGSTRVLVATDVAARGLDIKSLELVVNFELA 294

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
              E ++HRIGRT RAG  G A +  A E+ +  + I  +++  ++W    ++S   PLE
Sbjct: 295 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQITLNWQTPPVNSSIVPLE 354


>gi|1183961|emb|CAA93395.1| RNA elicase [Saccharomyces cerevisiae]
          Length = 547

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 130/359 (36%), Positives = 204/359 (56%), Gaps = 12/359 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ KPT IQ +  P+ L   D+ GIA TG+GKT S+ LP +  
Sbjct: 115 FDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVH 174

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+G +  +    + GG+P   Q 
Sbjct: 175 INAQPLLAPGDG----PIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQI 230

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG++++I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 231 RDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 290

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E+++++ ++L +P +++V +   +A       V   + + K+  L +
Sbjct: 291 DRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNK 350

Query: 237 QL-LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L   SQD     +IF + K+   ++   L + G+   AIHG+ DQR R  +L  F+ G 
Sbjct: 351 YLETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGR 410

Query: 296 IQLMVASDLAARGL-DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             +MVA+D+AARG+ ++  + +V N+D+P   E+Y+HRIGRTGRAG  G A +   +++
Sbjct: 411 SPIMVATDVAARGIGNVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQN 469


>gi|168021119|ref|XP_001763089.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685572|gb|EDQ71966.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 514

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 129/363 (35%), Positives = 198/363 (54%), Gaps = 17/363 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +      V+  VL AG+ +PT IQ +  P+ L+  D+ G+A+TG+GKT +++LP +  
Sbjct: 96  FEEASFPDYVLHEVLKAGFTEPTAIQAQGWPMALKGRDLIGLAETGSGKTLAYLLPAIVH 155

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L  G      P  L+L PTRELA Q+     K+G +  +    + GG P   Q 
Sbjct: 156 VNAQPYLAPGDG----PIVLVLAPTRELAVQIQQESTKFGASSKIKNTCIYGGAPKGPQI 211

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L++G +V+I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 212 RDLQKGVEVVIATPGRLIDMLEGRHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 271

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHC--FVATYAQYSKKCA 233
            RQTL +SAT   E++ ++  FL +P ++ + +    A   I+     V+ + +Y K   
Sbjct: 272 DRQTLYWSATWPKEVEFLARQFLNDPYKVTIGSSDLKANHAIDQVVEVVSEHEKYPKLIK 331

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL++++     +    +F   K+    +   L   G+   +IHG+  Q  R  +LS FK 
Sbjct: 332 LLEEIMDGSRLL----VFMETKRGCDQVTRQLRMDGWPALSIHGDKSQAERDWVLSEFKA 387

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +M A+D+AARGLD+ D+  V N+D P   E+Y+HRIGRTGRAG  G A+T     +
Sbjct: 388 GKSPIMTATDVAARGLDVKDIKCVINYDFPGSCEDYVHRIGRTGRAGAKGAAYTFFTAAN 447

Query: 354 IKH 356
            KH
Sbjct: 448 AKH 450


>gi|256273812|gb|EEU08734.1| Dbp2p [Saccharomyces cerevisiae JAY291]
          Length = 547

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 130/359 (36%), Positives = 204/359 (56%), Gaps = 12/359 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ KPT IQ +  P+ L   D+ GIA TG+GKT S+ LP +  
Sbjct: 115 FDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVH 174

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+G +  +    + GG+P   Q 
Sbjct: 175 INAQPLLAPGDG----PIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQI 230

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG++++I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 231 RDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 290

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E+++++ ++L +P +++V +   +A       V   + + K+  L +
Sbjct: 291 DRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNK 350

Query: 237 QL-LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L   SQD     +IF + K+   ++   L + G+   AIHG+ DQR R  +L  F+ G 
Sbjct: 351 YLETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGR 410

Query: 296 IQLMVASDLAARGL-DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             +MVA+D+AARG+ ++  + +V N+D+P   E+Y+HRIGRTGRAG  G A +   +++
Sbjct: 411 SPIMVATDVAARGIGNVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQN 469


>gi|224042619|ref|XP_002190578.1| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3
           [Taeniopygia guttata]
          Length = 675

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 218/392 (55%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 198 FSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 257

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 258 IYADGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVY 317

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 318 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 377

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 378 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 436

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + +   K + L  LL +       ++F   KK    L   L  +G++  +IHG+  QR 
Sbjct: 437 -WVEEPDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRD 495

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 496 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 555

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 556 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 587


>gi|219521150|gb|AAI72016.1| Ddx3x protein [Mus musculus]
          Length = 661

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 219/392 (55%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 181 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 240

Query: 63  L-------------EKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
           +             E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 241 IYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 300

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 301 GGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 360

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 361 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 419

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + +   K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 420 -WVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 478

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 479 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 538

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 539 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 570


>gi|328866692|gb|EGG15075.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 845

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 135/399 (33%), Positives = 219/399 (54%), Gaps = 24/399 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   +   +  A Y +PTP+Q   +P++++  D+   AQTG+GKTA+F+ P+++ 
Sbjct: 375 FMDVDLGDVLFRNIQYAKYTRPTPVQKSALPIIMKERDLMACAQTGSGKTAAFLFPIISS 434

Query: 63  L------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           +              G  R   PR L+L PTRELA Q+ +   K+     +   ++ GG 
Sbjct: 435 ILLDGAPEPPAAYRPGVPRPVHPRALVLAPTRELAQQIYEESVKFSYGSPVASVVVYGGA 494

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q  +L+RG D+L+ T GR++D  +RG++ ++ ++ LV+DEADRMLDMGF P I+ I
Sbjct: 495 EISQQIAELDRGCDILVATTGRLVDLLSRGRVSLSQVKFLVLDEADRMLDMGFEPQIRQI 554

Query: 171 TSL--VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATY 225
                +P    RQTL+FSAT    +Q ++ +FL N   ++V    +T    +   +V   
Sbjct: 555 IQDHDLPCNKDRQTLMFSATFPKPIQNLASDFLDNYIFLKVGVIGTTQNITQRIEYVPDD 614

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            + S     L+ L +SQ      +IF   K+   +L   L  +G+    IHG++ Q  R 
Sbjct: 615 EKNSTLLDFLETLTKSQALT---LIFVETKRLCDSLTVFLNSRGYPTTCIHGDLSQYERE 671

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L++F+ G    +VA+D+A+RGL IP+V HV N+D+PN    Y+HRIGRTGRAG+ G A
Sbjct: 672 SALNSFRSGNTPFLVATDVASRGLHIPNVMHVINYDLPNDVHVYVHRIGRTGRAGKKGNA 731

Query: 346 FTLVAKEDIKHIDAIEKLIEKK----VDWLNGDLSSLNP 380
            +   +++      + +L++K      DW +  ++S  P
Sbjct: 732 ISFFNEKNKPIAQELFQLMKKSNQEVPDWFDRSVNSFRP 770


>gi|255325662|ref|ZP_05366759.1| ATP-dependent RNA helicase [Corynebacterium tuberculostearicum
           SK141]
 gi|255297272|gb|EET76592.1| ATP-dependent RNA helicase [Corynebacterium tuberculostearicum
           SK141]
          Length = 432

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 146/426 (34%), Positives = 220/426 (51%), Gaps = 17/426 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL  ++V  + + G  +P PIQ   IP  L   DV G   TG+GKT +F LPML  
Sbjct: 4   FADLGLPQRLVHVLHNEGITEPFPIQKAAIPDALAGKDVLGRGPTGSGKTYTFGLPMLAR 63

Query: 63  LE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   G ++   PR LIL PTRELA Q+    ++      L V  ++GG+      + L R
Sbjct: 64  LAGTGASKPAHPRALILAPTRELATQIHQRLDEPAATLGLRVLAVVGGVNINHHIRSLAR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DVL+ TPGR  D  ++GKL ++ ++I  +DEAD+M DMGF+P ++ +  L P   Q L
Sbjct: 124 PVDVLVATPGRAQDLIDQGKLHLDAVQITALDEADQMADMGFLPQVRKLLRLTPVQGQRL 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ K+ E FL +P         +  +++ H       + ++   +L+   + 
Sbjct: 184 LFSATLDGDVNKLVEQFLHDPVVHSTAPVQAAVDSMSHHLFFVGERTARNEVVLRIAARQ 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I+F   K  V      L + G +   +HG+  Q +R + +  F +G+I ++VA
Sbjct: 244 GKT----IMFMRTKHGVDRQVKKLRRSGINAYPLHGDKGQGARTRAIEGFADGSIPVLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI DV  V + D P   + Y+HR GRT R G  G   TLV  E  K +DA+ 
Sbjct: 300 TDIAARGIDIADVSLVVHADPPAEHKAYLHRAGRTARGGAAGTVITLVMDEQRKEVDALI 359

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK-NNP--------IPQKSTGFDRRKKN 412
           K  +  V     D+S  + P     + +   ARK N P        +PQK      +K N
Sbjct: 360 K--KAGVTATEHDISHRDNPAGAPVLKEITGARKPNGPALPPPGQAVPQKPAK-SVKKSN 416

Query: 413 YSSQKS 418
           +  ++S
Sbjct: 417 FQRRRS 422


>gi|226292592|gb|EEH48012.1| ATP-dependent RNA helicase DED1 [Paracoccidioides brasiliensis
           Pb18]
          Length = 687

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 141/379 (37%), Positives = 213/379 (56%), Gaps = 20/379 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +  L   ++  ++ + Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 200 FTNPPLHEHLLSNIILSRYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSK 259

Query: 62  ILEK-----------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
            LEK           GR     P  LIL PTREL +Q+ D   K+     L   ++ GG 
Sbjct: 260 SLEKRGPDGDAPRGLGRQSKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVYGGA 319

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L++G +VL+ TPGR++D   RG++ +++I+ LV+DEADRMLDMGF P I+ I
Sbjct: 320 EMGNQLRQLDQGCNVLVATPGRLVDMMERGRISLSHIQYLVLDEADRMLDMGFEPQIRRI 379

Query: 171 T--SLVP--FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
              S +P    RQTL+FSAT   ++QK++E FL++   + V    ST+E I    +   +
Sbjct: 380 VQGSDMPDKHLRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRVIECDS 439

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              K  ALL  L    D+    ++F   K+    L   L        AIHG+  QR R +
Sbjct: 440 DKDKDSALLDILC--SDSTGLTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERER 497

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G   ++VA+ +AARGLDIP+V HV N+D+PN  ++Y+HRIGRTGRAG  G + 
Sbjct: 498 ALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGLST 557

Query: 347 TLVAKEDIKHIDAIEKLIE 365
              ++  IK+      +++
Sbjct: 558 AFFSR--IKNFKIARSMVD 574


>gi|15828540|ref|NP_325900.1| ATP-dependent RNA helicase [Mycoplasma pulmonis UAB CTIP]
 gi|14089482|emb|CAC13242.1| ATP-DEPENDENT RNA HELICASE [Mycoplasma pulmonis]
          Length = 480

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 137/409 (33%), Positives = 228/409 (55%), Gaps = 22/409 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  + +  +++ ++ + G+ KPT IQ   +P   +  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MRFTQMNIKSEILKSLDEIGFEKPTKIQEAVLPFAFEGKDIIGQAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + L+    R++    L++ PTRELA Q+ D     GK     +AL++GG+ +E Q   L 
Sbjct: 61  SNLDCSINRIQH---LVIAPTRELANQIYDQLNILGKYTCSKIALILGGVSYEKQKAALN 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G ++++ TPGR+ D   + K+ +++I+   +DEAD +L +GF   I  I + +P  RQ 
Sbjct: 118 SGVNIVVATPGRLEDLLAQNKIDLSHIKTFTLDEADELLKIGFYNEIIKIMNKLPKKRQN 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             F+AT  ++ +K+S+      K I +++   T E I+  FV   ++  K   L++ L  
Sbjct: 178 FFFTATFDEKTKKLSQEITNEAKMISMSSGLETTEKIDQNFVVV-SEEEKLITLVKFLDF 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            + T    +IF   K+ V  L  +L++ GFS   I G++ Q+ R  +L+ FK+  + ++V
Sbjct: 237 KKPTA--SVIFGRTKRRVDELASALQELGFSAVGIQGDMVQKDRTSVLNRFKDQKVNIIV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+  V  VFNFD+P   E Y HRIGRTGR  R G+A + V K ++ +I  I
Sbjct: 295 ATDVMARGIDVSHVDLVFNFDLPEEIEYYTHRIGRTGRGTRIGQAISFVKKPEVGYIYKI 354

Query: 361 ---EKLIEKKVD----------WLNGDLSSLNPPLEKIDIAQHNHARKN 396
               K I K++           W +  ++ L+  LE    AQ+ H R++
Sbjct: 355 MTETKSIIKEISIPSKEHLQTVWEDHLINKLSSILED---AQNKHWRED 400


>gi|213053471|ref|ZP_03346349.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213427378|ref|ZP_03360128.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|289823676|ref|ZP_06543288.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 416

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 131/330 (39%), Positives = 197/330 (59%), Gaps = 8/330 (2%)

Query: 45  AQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTV 103
           A+TG+GKTA+F L +L  ++     +   + L+L PTRELA QVA    +  +   N  +
Sbjct: 6   ARTGSGKTAAFGLGLLHRID---VTLFQTQALVLCPTRELADQVAGELRRLARFLPNTKI 62

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163
             L GG PF AQ   L+    +++ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF
Sbjct: 63  LTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGF 122

Query: 164 IPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
              I  +    P TRQTLLFSAT  + +  +S    Q P RIE++T  +    IE  F  
Sbjct: 123 SDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRVQQQPIRIEIDTVDAL-PAIEQQFFE 181

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
           T A   +K +LLQ LL SQ    + ++FCN KK+   +C +L   G S  A+HG+++QR 
Sbjct: 182 TSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRD 238

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F  G+ +++VA+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G
Sbjct: 239 RDQTLVRFANGSARILVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSG 298

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
            A +  A E+ +  + + ++++ K++WLN 
Sbjct: 299 LAISFCAPEEAQRANILSEMLQLKLNWLNA 328


>gi|261820728|ref|YP_003258834.1| ATP-dependent RNA helicase DbpA [Pectobacterium wasabiae WPP163]
 gi|261604741|gb|ACX87227.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 490

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 217/373 (58%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L  + +  + + GY   TP+Q  T+P VL   DV   A+TG+GKTA+F    + +
Sbjct: 36  FSSLALPAEQLSNLNELGYTDMTPVQAATLPAVLSGADVRAKAKTGSGKTAAF---GIGL 92

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L++        + L+L PTRELA QV+    +  +   N+ +  L GG P   Q   L  
Sbjct: 93  LDRIVVSDFTTQALVLCPTRELADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSLVH 152

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI DH  +  L ++++++LV+DEADRMLDMGF   I ++ S  P  RQTL
Sbjct: 153 APHIVVGTPGRIQDHLRKRSLSLDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQTL 212

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  +E++++S    + P+R E+   +     IE  F  T  +  ++  LL  +L S
Sbjct: 213 LFSATYPEEIEQISARVQRQPQRFEI-ADNVEESAIEQRFYETTKE--QRLPLLIAIL-S 268

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + ++FCN K++  ++  +L+ +G SV A+HG+++QR R ++L  F   + +++VA
Sbjct: 269 HYQPASCVVFCNTKRDCQSVFDALDMRGISVSALHGDLEQRDRDQVLVRFANRSCRVLVA 328

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++  V NF++    E ++HRIGRTGRAG  G A +L   +++   + IE
Sbjct: 329 TDVAARGLDIKELALVVNFELAFDPEVHVHRIGRTGRAGTQGLAVSLCTPQEMNRANLIE 388

Query: 362 KLIEKKVDWLNGD 374
             +  ++ W + D
Sbjct: 389 DYLGMRIKWTSAD 401


>gi|296807019|ref|XP_002844169.1| ATP-dependent RNA helicase DED1 [Arthroderma otae CBS 113480]
 gi|238843652|gb|EEQ33314.1| ATP-dependent RNA helicase DED1 [Arthroderma otae CBS 113480]
          Length = 680

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 136/361 (37%), Positives = 203/361 (56%), Gaps = 23/361 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 199 FTNPPLDDHLISNIKLASYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQ 258

Query: 63  ----------------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                              GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 259 AFQNGPSPAPTQQGGQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVV 318

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 319 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQ 378

Query: 167 IQNITS---LVPFT-RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I     + P   RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 379 IRRIVEGEDMPPVAGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQ--K 436

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             Y + + K ++L  +L +       +IF   K+   +L   L  Q F   AIHG+  QR
Sbjct: 437 VEYVEDADKRSVLLDILHTHGAGLT-LIFVETKRMADSLSEFLINQHFPATAIHGDRTQR 495

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 496 ERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 555

Query: 343 G 343
           G
Sbjct: 556 G 556


>gi|219123243|ref|XP_002181938.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406539|gb|EEC46478.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 433

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 140/394 (35%), Positives = 212/394 (53%), Gaps = 6/394 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG    +  A     +   T IQ   +P   +  D+ G+A+TG+GKT +F LP+L  
Sbjct: 41  FKSLGACETLQEACDRLEWKTATRIQASVLPEAFEGRDIIGLAETGSGKTGAFCLPILQG 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   R  V+    LIL PTRELA Q+    +  G+    T   ++GG+   +Q   L R 
Sbjct: 101 LL--RKPVKGTAALILTPTRELAFQILQVVQGLGQAMGATAVCVVGGVDRTSQAIALGRN 158

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             V+I TPGR+LDH    K   +N +  LV+DEADRML M F   +  I   +P  RQTL
Sbjct: 159 PHVVIATPGRLLDHLKDTKGFNLNKVRYLVLDEADRMLSMDFEEELHQILDNMPEQRQTL 218

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT ++ K+    L++P +++V+T   T + +   ++   A+Y K C L    L +
Sbjct: 219 LFSATMTTQVAKLERASLKDPVKVQVSTKFQTPKQLLQSYLFIPAKY-KDCYL--TYLIN 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   ++ ++F     NV  L   L   GF    +HG +DQ  R+  L  F  G   +++ 
Sbjct: 276 EHAGQSILVFGATCNNVQRLALMLRNLGFPAVCLHGQMDQSKRLGALQKFSSGDRTILLC 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLD+P V  V NFD+P   + YIHR+GRT RAG+ G+A  +V + D++    +E
Sbjct: 336 TDVASRGLDLPQVDLVINFDLPGHGKEYIHRVGRTARAGKSGRAIAMVTQYDVEVYQRLE 395

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
            L+ KK+D    D  ++   LE++  AQ    R+
Sbjct: 396 ALLGKKLDEWKTDEKTVLVLLERVSDAQRMATRE 429


>gi|332293226|ref|YP_004431835.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171312|gb|AEE20567.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 644

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 220/371 (59%), Gaps = 8/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIP-LVLQRHDVCGIAQTGTGKTASFVLPM 59
           M F +LGL+  ++ A+ D G+  P+ IQ + IP L+ +  D+  +AQTGTGKTA+F  P+
Sbjct: 1   MTFDELGLNAPLLQAIADMGFETPSKIQEEAIPQLLAEDRDMVALAQTGTGKTAAFGFPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
           L  +++     +  + LI+ PTREL  Q+ +  + Y K+   + V  + GG   + Q ++
Sbjct: 61  LQNIDENS---KTTQGLIIAPTRELCLQITNEMKLYSKHMKGVRVVAVYGGANIQEQARE 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           + RGA +++ TPGR+ D   R  + +  +   V+DEAD ML+MGF   I NI +  P  +
Sbjct: 118 ISRGAQIVVATPGRMQDMMRRRMVDITKLSYCVLDEADEMLNMGFYEDITNILADTPEDK 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            T LFSATM  E+ ++++ F+ NP  I V   +  A+ + H +   + +   +   L++L
Sbjct: 178 LTWLFSATMPREVSRIAKEFMVNPLEITVGHKNEGAKNVSHEYFVVHTR--DRYQALKRL 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +   + + +IFC  K++   +   L + G++  A+HG++ Q  R  ++ +F+   IQ+
Sbjct: 236 SDANPDIFS-VIFCRTKRDTQKVAEQLIEDGYNAGALHGDLSQNQRDLVMKSFRNRQIQM 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+ HV N+ +P+  E Y HR GRTGRAG+ G +  +V K +++ I 
Sbjct: 295 LVATDVAARGIDVDDITHVVNYQLPDEIETYTHRSGRTGRAGKTGTSLVIVTKSEMRKIK 354

Query: 359 AIEKLIEKKVD 369
            +EK++ KK +
Sbjct: 355 QLEKILGKKFE 365


>gi|120610574|ref|YP_970252.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120589038|gb|ABM32478.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
          Length = 619

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 145/411 (35%), Positives = 224/411 (54%), Gaps = 56/411 (13%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-------DVCGIAQTGTGKTASF 55
           F +LGL+P++V AV D GY +PT +Q + IPL +          D+   +QTG+GKTA+F
Sbjct: 51  FVELGLAPELVQAVADLGYTQPTGVQERAIPLAMGAGADAGKFIDLMVSSQTGSGKTAAF 110

Query: 56  VLPMLTIL--------------------------EKGRARVR-------------MPRTL 76
           +LP+L  L                          E    R +              P  L
Sbjct: 111 LLPVLHTLIGQQAAAQAAARAEYEAAVAEAAARGEPAPKRAKRKDPTNPRHFKAATPGAL 170

Query: 77  ILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           +L PTRELA QVA D  E       L VA ++GGIP++ Q  KL+  AD+++ TPGR+LD
Sbjct: 171 VLCPTRELAQQVAHDAIELVRHCRGLRVANVVGGIPYQLQIAKLQN-ADLVVATPGRLLD 229

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
                ++ ++ ++ LV+DEADRMLD+GF   +  I  L    +QT++FSAT    +Q+++
Sbjct: 230 LQRSMQIKLDQVQFLVVDEADRMLDLGFSDDLAEINELTSQRKQTMMFSATFAPRIQQLA 289

Query: 196 ENFLQNP----KRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQSQDTMKNGII 250
              + +     K++++++P      I+   F A  AQ+ +K  +L   L+   ++   ++
Sbjct: 290 MRVMHDGGASVKKVQIDSPQEKHANIKQVLFWADNAQHKRK--MLDHWLRDT-SINQAVV 346

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F + +     L + L++ GFS  A+HG + Q  R + L   + G +Q++VA+D+AARG+D
Sbjct: 347 FASTQVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGID 406

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +P + HVFNF +P +AE+Y HRIGRTGRAGR G A T     D + I  IE
Sbjct: 407 VPTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIE 457


>gi|254830000|ref|ZP_05234655.1| hypothetical protein Lmon1_01525 [Listeria monocytogenes 10403S]
          Length = 470

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 137/367 (37%), Positives = 206/367 (56%), Gaps = 17/367 (4%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +L LS ++  A+ + GY + TP+Q   IP+ L   D+   +QTG+GKTA+F +P   I E
Sbjct: 3   NLKLSEEIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIP---IAE 59

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           +       P+ LI+ PTRELA QV       G+   +  A + G  PF  Q  +L +   
Sbjct: 60  QVEWEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNH 119

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGR+LDH  +G L ++ +  LV+DE D ML MGFI  +++I S +P  RQ L FS
Sbjct: 120 IVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFS 179

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           ATM +E+Q + + +  NP  IE+   S     I H  +    Q   K   L+ +L +++ 
Sbjct: 180 ATMPEEMQDLIKRYQDNPMVIEM--ASEKTNPIFHVEM----QTDNKEKTLKDVLITENP 233

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             + IIFCN K  V  L   L+        IHG + Q  R + + +FK G  + ++A+D+
Sbjct: 234 -DSAIIFCNTKNQVDELTDLLD---VKASKIHGGLRQEDRFRAMDDFKSGKSRFLIATDV 289

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL- 363
           A RG+D+ +V  V N+D+P   ENY+HRIGRTGRAG+ GKA + V   +   +  IE++ 
Sbjct: 290 AGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEML 349

Query: 364 ---IEKK 367
              IEKK
Sbjct: 350 DVTIEKK 356


>gi|3986285|dbj|BAA34993.1| DjVLGA [Dugesia japonica]
          Length = 726

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 141/389 (36%), Positives = 213/389 (54%), Gaps = 25/389 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L P V   +    Y +PTP+Q   +P+++QR D+   AQTG+GKTA+F++P+L++
Sbjct: 213 FLELKLHPIVSHNISLTQYTRPTPVQRYAVPIIMQRRDLMACAQTGSGKTAAFLIPLLSM 272

Query: 63  ---------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                    L     +   P  LIL PTRELA Q+ D   K+     +   ++ GG    
Sbjct: 273 MYQDGPGNSLSHSGYKKEYPVALILAPTRELAVQIYDEARKFSYRSLVRPCVVYGGRDIR 332

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + +G ++L+ TPGR+ D   R K+ ++ I  LV+DEADRMLDMGF P I+ I   
Sbjct: 333 GQLQDISQGCNMLVATPGRLSDMLERCKIGLDCIRYLVLDEADRMLDMGFEPQIRKIVEQ 392

Query: 174 V----PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                P  RQTL+FSAT   E+Q ++ +FL++   + V    ST++ I    V  Y   +
Sbjct: 393 TNMPPPGQRQTLMFSATFPREIQMLASDFLKDYLFLRVGKVGSTSQNITQRIV--YVDEN 450

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           +K   L  +L   D+    ++F   K+    L   L  +G  V +IHG+  Q  R   L 
Sbjct: 451 EKRDHLLDILTDIDSDSLILVFVETKRGADALEGFLHTEGSCVASIHGDRSQSDRELALQ 510

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL- 348
           +F+EG+  ++VA+ +AARGLDIP+V  V N+D+P   E Y+HRIGRTGR G  G+A +  
Sbjct: 511 SFREGSTPILVATRVAARGLDIPNVKFVINYDLPTDIEEYVHRIGRTGRVGNLGEAISFY 570

Query: 349 ------VAKEDIKHIDAIEKLIEKKVDWL 371
                 VAKE +  +    +++    DWL
Sbjct: 571 TDKNNNVAKELVDILLEANQIVP---DWL 596


>gi|19113315|ref|NP_596523.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces pombe 972h-]
 gi|10720389|sp|P24782|DBP2_SCHPO RecName: Full=ATP-dependent RNA helicase dbp2; AltName:
           Full=p68-like protein
 gi|173419|gb|AAA35319.1| p68 RNA helicase [Schizosaccharomyces pombe]
 gi|3810840|emb|CAA21801.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces pombe]
          Length = 550

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 136/393 (34%), Positives = 213/393 (54%), Gaps = 24/393 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+  PTPIQ +  P+ +   D+ GI+ TG+GKT S+ LP +  
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 183

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 184 INAQPLLSPGDG----PIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQI 239

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG ++ I TPGR+LD  +  K  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 240 RDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 299

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL-- 234
            RQT++FSAT   E+Q+++ ++L +  ++ V +    A       V       K+  L  
Sbjct: 300 DRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGK 359

Query: 235 -LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            ++++L+ +D     +IF   K+   ++   L + G+   AIHG+  Q  R  +L+ F+ 
Sbjct: 360 DIEEVLKDRDNKV--LIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRT 417

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +MVA+D+A+RG+D+  + HVFN+D P   E+Y+HRIGRTGRAG  G A+T    ++
Sbjct: 418 GKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDN 477

Query: 354 IKHI-DAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
            K   + +  L E K D        ++P LE++
Sbjct: 478 AKQARELVSILSEAKQD--------IDPKLEEM 502


>gi|255712653|ref|XP_002552609.1| KLTH0C08866p [Lachancea thermotolerans]
 gi|238933988|emb|CAR22171.1| KLTH0C08866p [Lachancea thermotolerans]
          Length = 972

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 135/417 (32%), Positives = 223/417 (53%), Gaps = 52/417 (12%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  GLS  +V  +   G+ +PTPIQ KTIPL+LQ+ D+ G+A+TG+GKTA+FVLPM+  
Sbjct: 124 FASFGLSKFIVSNIAKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK 183

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A++   R +IL P+RELA Q    F ++ +  +L   LL GG   E Q   +   
Sbjct: 184 LKGHSAKI-GARAVILSPSRELAMQTHKVFREFSRGSDLRSVLLTGGESLEEQFGLMMSN 242

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV+I TPGR L       L + ++E LV DEADR+ +MGF   +  + + +P  RQTLL
Sbjct: 243 PDVVIATPGRFLHLKVEMNLDLKSVEYLVFDEADRLFEMGFEEQLSELLAALPVARQTLL 302

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK----------- 231
           FSAT+   L   ++  L NP  + ++  +  +E +E  F+++  +  +            
Sbjct: 303 FSATLPSSLVNFAKAGLTNPVLVRLDAETKVSENLEMLFLSSKNEEREANLLYLLQEAMK 362

Query: 232 --CALLQQLLQSQDTMKNG--------------------------------------IIF 251
              A  +QLL+ +  +KN                                       I+F
Sbjct: 363 IPVATEEQLLEYKAKVKNSYDSDDSDEDAKAKAKKQRKSAIRKKLPSANELPSEHATIVF 422

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
              + +V  +   L+  G+ V  ++G +DQ +R + L NF+ G   ++V +D+AARG+DI
Sbjct: 423 VPTRHHVEYISQLLKDCGYLVSYLYGTLDQHARRQQLFNFRAGLTTILVVTDVAARGVDI 482

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           P + +V N+ +P  ++ ++HR+GRT RAG  G A+++V++ ++ ++  +E  + KK+
Sbjct: 483 PLLANVVNYSLPASSKIFVHRVGRTARAGNKGFAYSIVSENELPYLLDLELFLGKKI 539


>gi|284033244|ref|YP_003383175.1| DEAD/DEAH box helicase domain-containing protein [Kribbella flavida
           DSM 17836]
 gi|283812537|gb|ADB34376.1| DEAD/DEAH box helicase domain protein [Kribbella flavida DSM 17836]
          Length = 815

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 207/371 (55%), Gaps = 21/371 (5%)

Query: 13  VCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGR--- 67
           +C  LD    V+P PIQ  T+P+ L   D+ G A+TGTGKT  F +P+L   +  G    
Sbjct: 5   ICDALDRVNIVEPFPIQEMTLPVALMGTDLIGQARTGTGKTLGFGIPLLQRTISPGEPDY 64

Query: 68  ---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
              A    P+ L++ PTREL  QVA +         + +  + GG+ +E Q + L+ G D
Sbjct: 65  EELAAPGKPQALVVTPTRELTIQVAKDLTTASTVRTVRILTIYGGVAYEPQLEMLKSGVD 124

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           V++ TPGR+LD  NRG L +++I++LV+DEAD MLD+GF+P ++ I    P  RQT+LFS
Sbjct: 125 VVVGTPGRLLDLANRGVLDLSHIKVLVLDEADEMLDLGFLPDVERILRKTPELRQTMLFS 184

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS------KKCALLQQL 238
           ATM   +  ++   +++P  I   +   T        V T AQ+        K  ++ ++
Sbjct: 185 ATMPSAVIGLARTHMRHPLNIRAESHEDTQ------MVPTTAQFVYRAHDLDKPEVVARI 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ++D  +  +IFC  K+    L   L  +GF   AIHG+++Q++R + L+ F+   I +
Sbjct: 239 LQAEDRGRV-MIFCRTKREAGRLTDDLADRGFKAAAIHGDLNQQARERALTRFRGDKIDV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +D+AARG+D+  V HV N   P   + YIHRIGRTGRAG  G A T V   D+    
Sbjct: 298 LICTDVAARGIDVEGVTHVINNTCPEDEKAYIHRIGRTGRAGASGIAVTFVDWADVTRWK 357

Query: 359 AIEKLIEKKVD 369
            I K ++   D
Sbjct: 358 TINKALDLPYD 368


>gi|309266557|ref|XP_003086787.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Mus
           musculus]
 gi|309269288|ref|XP_003084847.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like isoform 2
           [Mus musculus]
 gi|148694445|gb|EDL26392.1| mCG15236 [Mus musculus]
          Length = 620

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 134/359 (37%), Positives = 211/359 (58%), Gaps = 5/359 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT S+++P    L+     
Sbjct: 225 PEVMENIKRAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLSYLMPGFIHLDSQPLE 284

Query: 70  VR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
            R  P  L+L PTRELA QV     KY    +L    + GG   + Q + + +G D++I 
Sbjct: 285 QRNGPGMLVLTPTRELALQVEAECSKYSYG-DLKSVCVYGGGDRDGQIQDVSKGVDIIIA 343

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR+ D      + + ++  LV+DEAD+MLDMGF P I  I   V   RQT++ SAT  
Sbjct: 344 TPGRLNDLQMNNFVNLKSVTYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTIMTSATWP 403

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
             ++++++++L+ P  + V T    A  T++   + T  +  +K   +Q  L++      
Sbjct: 404 YAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIITTEE--EKRTHIQTFLENMSPKDK 461

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            I+F ++K    +L   L  +  SV ++HGN +Q  R K L NFK G +++++A+DLA+R
Sbjct: 462 VIVFVSRKAVADHLSSDLILRHISVESLHGNREQSDREKALENFKTGKVRILIATDLASR 521

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           GLD+ D+ HV+N+D P   E Y+HR+GRTGRAGR G + TL+ + D +    +  ++E+
Sbjct: 522 GLDVHDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGMSITLITRNDWRVATELINILER 580


>gi|6753620|ref|NP_034158.1| ATP-dependent RNA helicase DDX3X [Mus musculus]
 gi|2500528|sp|Q62167|DDX3X_MOUSE RecName: Full=ATP-dependent RNA helicase DDX3X; AltName:
           Full=D1Pas1-related sequence 2; AltName: Full=DEAD box
           RNA helicase DEAD3; Short=mDEAD3; AltName: Full=DEAD box
           protein 3, X-chromosomal; AltName: Full=Embryonic RNA
           helicase
 gi|407996|gb|AAA53630.1| RNA helicase [Mus musculus]
 gi|1835122|emb|CAA86261.1| dead-box RNA helicase [Mus musculus]
 gi|74187753|dbj|BAE24540.1| unnamed protein product [Mus musculus]
 gi|74190343|dbj|BAE37257.1| unnamed protein product [Mus musculus]
 gi|123858229|emb|CAM15722.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Mus
           musculus]
 gi|1098036|prf||2115205A RNA helicase
          Length = 662

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 219/392 (55%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 182 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241

Query: 63  L-------------EKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
           +             E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 242 IYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 301

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 302 GGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 361

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 362 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 420

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + +   K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 421 -WVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 479

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 480 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 539

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 540 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 571


>gi|262381389|ref|ZP_06074527.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B]
 gi|262296566|gb|EEY84496.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B]
          Length = 408

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 134/354 (37%), Positives = 208/354 (58%), Gaps = 19/354 (5%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84
           TP+Q  TIP++L+  D+   AQTGTGKTA++VLP++  L KG         +I+ PTREL
Sbjct: 7   TPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINELSKGCHPTDAVNAVIMAPTREL 66

Query: 85  AAQVADNFEKYGKNYNL----TVALLIG--GIPFEAQNKKLERGADVLICTPGRILDHFN 138
           A Q+    +  G  Y +     VA+  G  GI +E Q + LE GAD++I TPGR+L H  
Sbjct: 67  AQQIDQQIQ--GFTYFIPSVSAVAVYGGTDGIAWEQQKRGLEMGADIVIATPGRLLSHIK 124

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
            G + ++ +   V+DEADRMLDMGF   I  +   +P   QT++FSATM  +++ +++  
Sbjct: 125 LGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPPYCQTIMFSATMPPKIRTLAKTI 184

Query: 199 LQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
           L++P+ +++     P S  +T   C+        +K  +LQ L  +Q   +  IIF + K
Sbjct: 185 LKDPEEVKIAISRPPESIMQTAYICY------DPQKLKILQDLF-TQSRPQRVIIFSSSK 237

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
             V  L  +L++  F+V A+H +++Q  R +++  FK G I ++VA+D+ ARG+DI D+ 
Sbjct: 238 MKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVARGIDINDIK 297

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            V NFD+P+  E+Y+HRIGRT R     G A T V+ ++      IE  +EK+V
Sbjct: 298 LVVNFDIPHDPEDYVHRIGRTARGTNGEGLAITFVSIDEQAQFKRIEDFLEKEV 351


>gi|195146268|ref|XP_002014109.1| GL24500 [Drosophila persimilis]
 gi|194103052|gb|EDW25095.1| GL24500 [Drosophila persimilis]
          Length = 799

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 151/390 (38%), Positives = 220/390 (56%), Gaps = 29/390 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ L+  +   V  A Y KPTP+Q   IP+++   D+   AQTG+GKTA+F++P+L  
Sbjct: 292 FDDVQLTEIIRNNVSLARYDKPTPVQKHAIPIIISGRDLMACAQTGSGKTAAFLVPILNQ 351

Query: 62  ILEKGRA-----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           + E G +           R + P  L+L PT +LA Q+ +  +K+     +  A+L GG 
Sbjct: 352 MYEHGMSAPPQNNRQYSRRKQYPSGLVLAPTHKLATQIFEEAKKFAYRSRMRPAVLYGGN 411

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L+RG  +++ TPGR+ D   RGK+ + NI  LV+DEADRMLDMGF P I+ I
Sbjct: 412 NTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRI 471

Query: 171 TSL--VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                +P T  RQTL+FSAT   ++Q+++ +FL N   + V    ST+E I    +  Y 
Sbjct: 472 VEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYE 531

Query: 227 QYSKKCALLQQLLQ-------SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
           Q  K+  LL  L         S+D++   +IF   KK   +L   L +    V +IHG+ 
Sbjct: 532 Q-DKRSYLLDLLSSIRDGPEYSKDSLT--LIFVETKKGADSLEEFLYQCSHPVTSIHGDR 588

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q+ R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P+  E Y+HRIGRTGR 
Sbjct: 589 TQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRM 648

Query: 340 GRHGKAFTLVAKEDIKHI--DAIEKLIEKK 367
           G  G A +    E  ++I  D +E LIE K
Sbjct: 649 GNLGVATSFF-NEKNRNICSDLLELLIETK 677


>gi|145349996|ref|XP_001419411.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579642|gb|ABO97704.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 394

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 203/368 (55%), Gaps = 25/368 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D+ L   ++  +    Y KP+PIQ + IP++L   DV G A+TG+GKTA+F +PM+  
Sbjct: 34  FEDMTLVRDIMADIRYREYDKPSPIQAQAIPVILSGRDVLGCAETGSGKTAAFSIPMIQH 93

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFE 113
                 L +G      P  +++ PTRELA Q+   A  F +  K +    A+++GG    
Sbjct: 94  ALNQAPLRQGDG----PYAIVMAPTRELAQQIEAEAKTFTRSSKGFR--TAIIVGGTNMS 147

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  G  +++ TPGR++DH  +G   ++ +  +V+DEADRMLDMGF P I+ +   
Sbjct: 148 EQRGALRSGVQIVVATPGRLIDHLQQGNTNLSRVSFVVLDEADRMLDMGFEPQIREVLMN 207

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKC 232
           +P   QTLLFSATM  E++ ++ ++L  P +++V T S+ TA   +H      A+   + 
Sbjct: 208 LPKPHQTLLFSATMPSEVEALASDYLHKPVKVKVGTTSAPTANVSQHLEKVVDAEKVDR- 266

Query: 233 ALLQQLLQSQ-DTMKNG------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            L+  L+  Q + MK G      +IF  +K     +   L  +     A+HG   Q  R 
Sbjct: 267 -LVTMLIGEQREAMKLGQDMPMTVIFVERKNRADEIAELLNAENVPAAALHGGRSQGERE 325

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L ++K G   ++VA+D+AARGLD+  V HV N D+P   E+Y+HRIGRTGRAG  G++
Sbjct: 326 AALHDYKTGRCSVLVATDVAARGLDVKGVAHVVNLDLPRNFEDYVHRIGRTGRAGMSGRS 385

Query: 346 FTLVAKED 353
            +     D
Sbjct: 386 TSFYTDRD 393


>gi|328849200|gb|EGF98385.1| hypothetical protein MELLADRAFT_22529 [Melampsora larici-populina
           98AG31]
          Length = 815

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 128/372 (34%), Positives = 212/372 (56%), Gaps = 9/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M ++  GL    +  +   GY  P+PIQ + +P ++   DV G+A+TG+GKT +F+LPM 
Sbjct: 148 MKWSWFGLHSACLEVIKSLGYQAPSPIQGQAVPAIMSGRDVIGVAKTGSGKTLAFLLPMF 207

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             ++  R    +  P  +I+ PTRELA Q+      + K   L  A   GG P +     
Sbjct: 208 RHIKDQRPLEALEGPIAMIMTPTRELATQIYKEGRPFLKALGLRAACAYGGSPLKDNIAD 267

Query: 119 LERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           ++RGA+V++CTPGR+++    N G+++ M  +  LV+DEADRM DMGF P +  I + + 
Sbjct: 268 MKRGAEVIVCTPGRMIELLTTNSGRVINMRRVTYLVLDEADRMFDMGFEPQVMKIVNQIR 327

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT+LFSAT   +++ ++   L+ P  I V   S  A  IE   V      +K   LL
Sbjct: 328 PDRQTVLFSATFPKQMEALARKILRRPLEITVGGRSVVASEIEQ-IVEVRDDSTKFNRLL 386

Query: 236 QQL--LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           + L    ++D+    ++F +++++  NL   L K+G+   ++HG  +Q  R +++++FK 
Sbjct: 387 EILGRFYNEDSESRSLVFVDRQESADNLFRDLLKKGYPCLSLHGGKEQVDRDQVIADFKA 446

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G   T ++ + 
Sbjct: 447 GVTPIVIATSVAARGLDVKQLKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCITFISPDQ 506

Query: 354 IKH-IDAIEKLI 364
            ++ ID +  L+
Sbjct: 507 ERYAIDLLRALV 518


>gi|323352003|gb|EGA84542.1| Dbp1p [Saccharomyces cerevisiae VL3]
          Length = 551

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 140/364 (38%), Positives = 202/364 (55%), Gaps = 19/364 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF+   L   ++  +  A + KPTP+Q  +IP+V +  D+   AQTG+GKT  F+ P+ 
Sbjct: 88  LDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLF 147

Query: 61  TIL---------EKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
           T L         EK ++   R   P  L+L PTRELA Q+ +   K+     +   ++ G
Sbjct: 148 TELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYG 207

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G P   Q ++++RG D+L+ TPGR+ D   RGK+ + NI+ LV+DEADRMLDMGF P I+
Sbjct: 208 GAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIR 267

Query: 169 NITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           +I           RQTL+FSAT   ++Q ++ +FL N   + V    ST+E I    +  
Sbjct: 268 HIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYV 327

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                KK  LL  L      +   +IF   K+    L   L  Q F   AIHG+  Q  R
Sbjct: 328 -DDMDKKSXLLDLLSAEHKGLT--LIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAER 384

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + LS FK     ++VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G 
Sbjct: 385 ERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGV 444

Query: 345 AFTL 348
           A + 
Sbjct: 445 ATSF 448


>gi|242801276|ref|XP_002483729.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218717074|gb|EED16495.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 803

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 140/445 (31%), Positives = 229/445 (51%), Gaps = 52/445 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + GL  +++  V   GY  PTPIQ   IP+ LQ  D+ G+A TG+GKTASF+LP+   
Sbjct: 365 WEESGLPRRLLDLVKQVGYTDPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLFVY 424

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +       E    +   P  +IL PTRELA Q+    +K+ K  N  V  ++GG   E Q
Sbjct: 425 ISELPRLDEFEWRKNDGPYAIILAPTRELAQQIEIEAKKFSKPLNFNVVSIVGGHSLEEQ 484

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +P
Sbjct: 485 AYSLRDGAEIIIATPGRLVDCLERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALP 544

Query: 176 FT--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNT 209
            T                          RQT++++ATM   +++++  +L+ P  + +  
Sbjct: 545 VTNEKPDTEEAEDAQAMSQHVGGRDRRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 604

Query: 210 PSSTAETIEHC--FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
                +T+E    FVA   +  K+ A +    Q Q  +   I+F N K+N   +   +++
Sbjct: 605 VGQAVDTVEQRVEFVAGEDKRKKRLADILMSGQFQPPI---IVFVNIKRNCDAVAKDIKQ 661

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            GFS   +HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++    E
Sbjct: 662 MGFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIE 721

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
           +Y HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + 
Sbjct: 722 SYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQML------MKSPISRVPEELRKHEA 775

Query: 388 AQHNHARKNNPIPQKSTGFDRRKKN 412
           AQ          P +  GF ++K +
Sbjct: 776 AQSK--------PTRGGGFSKQKAD 792


>gi|319761928|ref|YP_004125865.1| dead/deah box helicase domain protein [Alicycliphilus denitrificans
           BC]
 gi|317116489|gb|ADU98977.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           BC]
          Length = 584

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 145/411 (35%), Positives = 225/411 (54%), Gaps = 56/411 (13%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCG-------IAQTGTGKTASF 55
           F  LGL+P++V AV D GY +PT +Q K IPL +   DV G        +QTG+GKTA+F
Sbjct: 33  FVRLGLAPELVQAVADLGYTQPTAVQEKAIPLAMGAADVAGRFIDLMVSSQTGSGKTAAF 92

Query: 56  VLPMLTILEKGRA---------------------------------------RVRMPRTL 76
           +LP+L  L + +A                                       +   P  L
Sbjct: 93  LLPVLHTLIQQQADADAAARAEFERAAAEAAARGEAAPKRPKRKNPTHPRNFKAAAPGAL 152

Query: 77  ILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           +L PTRELA QVA D  E       L +A ++GG+P++ Q  +L+  A++++ TPGR+LD
Sbjct: 153 VLCPTRELAQQVAHDAIELVKHCKGLRIANVVGGMPYQLQIARLQN-ANLVVATPGRLLD 211

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
                ++ ++ ++ LV+DEADRMLD+GF   +  I  L    +QT++FSAT    +Q+++
Sbjct: 212 LQRSMQIKLDQVQFLVVDEADRMLDLGFSDDLAEINQLTSERKQTMMFSATFAPRIQQLA 271

Query: 196 ENFLQ----NPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQSQDTMKNGII 250
              +     + K+++++TP      I+   + A  AQ+ +K  LL   L+   ++   I+
Sbjct: 272 MRVMHEGGASVKKVQIDTPQEKHANIKQMLYWADNAQHKRK--LLDHWLRDA-SIGQAIV 328

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F + +     L + L++ GFS  A+HG + Q  R + L   + G +Q++VA+D+AARG+D
Sbjct: 329 FASTQVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGID 388

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +P + HVFNF +P +AE+Y HRIGRTGRAGR G A T     D + I  IE
Sbjct: 389 VPSITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIE 439


>gi|16803286|ref|NP_464771.1| hypothetical protein lmo1246 [Listeria monocytogenes EGD-e]
 gi|224499083|ref|ZP_03667432.1| hypothetical protein LmonF1_05030 [Listeria monocytogenes Finland
           1988]
 gi|224501811|ref|ZP_03670118.1| hypothetical protein LmonFR_04752 [Listeria monocytogenes FSL
           R2-561]
 gi|284801628|ref|YP_003413493.1| hypothetical protein LM5578_1381 [Listeria monocytogenes 08-5578]
 gi|284994770|ref|YP_003416538.1| hypothetical protein LM5923_1334 [Listeria monocytogenes 08-5923]
 gi|16410662|emb|CAC99324.1| lmo1246 [Listeria monocytogenes EGD-e]
 gi|284057190|gb|ADB68131.1| hypothetical protein LM5578_1381 [Listeria monocytogenes 08-5578]
 gi|284060237|gb|ADB71176.1| hypothetical protein LM5923_1334 [Listeria monocytogenes 08-5923]
          Length = 470

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 137/367 (37%), Positives = 206/367 (56%), Gaps = 17/367 (4%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +L LS ++  A+ + GY + TP+Q   IP+ L   D+   +QTG+GKTA+F +P   I E
Sbjct: 3   NLKLSEEIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIP---IAE 59

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           +       P+ LI+ PTRELA QV       G+   +  A + G  PF  Q  +L +   
Sbjct: 60  QVEWEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNH 119

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGR+LDH  +G L ++ +  LV+DE D ML MGFI  +++I S +P  RQ L FS
Sbjct: 120 IVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFS 179

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           ATM +E+Q + + +  NP  IE+   S     I H  +    Q   K   L+ +L +++ 
Sbjct: 180 ATMPEEMQDLIKRYQDNPMVIEM--ASEKTNPIFHVEM----QTDNKEKTLKDVLITENP 233

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             + IIFCN K  V  L   L+        IHG + Q  R + + +FK G  + ++A+D+
Sbjct: 234 -DSAIIFCNTKNQVDELTDLLD---VKASKIHGGLRQEDRFRAMDDFKSGKSRFLIATDV 289

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL- 363
           A RG+D+ +V  V N+D+P   ENY+HRIGRTGRAG+ GKA + V   +   +  IE++ 
Sbjct: 290 AGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEML 349

Query: 364 ---IEKK 367
              IEKK
Sbjct: 350 DVTIEKK 356


>gi|258566652|ref|XP_002584070.1| ATP-dependent RNA helicase ded1 [Uncinocarpus reesii 1704]
 gi|237905516|gb|EEP79917.1| ATP-dependent RNA helicase ded1 [Uncinocarpus reesii 1704]
          Length = 670

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 137/361 (37%), Positives = 204/361 (56%), Gaps = 23/361 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 182 FTNPPLDDHLISNIKLASYKTPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQ 241

Query: 63  LEK----------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
             K                GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 242 AFKNGPSAVPTQNANQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVV 301

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 302 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQ 361

Query: 167 IQNITS---LVPFT-RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I     + P   RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 362 IRRIVEGEDMPPVNGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQ--K 419

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             Y + + K ++L  +L +  T    +IF   K+   +L   L  Q F   AIHG+  QR
Sbjct: 420 VEYVEDNDKRSVLLDILHTHGTGLT-LIFVETKRMADSLSEFLINQNFPATAIHGDRTQR 478

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+     ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 479 ERERALEYFRNARCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 538

Query: 343 G 343
           G
Sbjct: 539 G 539


>gi|328883901|emb|CCA57140.1| putative ATP-dependent RNA helicase [Streptomyces venezuelae ATCC
           10712]
          Length = 772

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 129/347 (37%), Positives = 187/347 (53%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP+L  
Sbjct: 58  FGDLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLAT 117

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G    + PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LERG
Sbjct: 118 LAGGHTDKKKPRGVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERG 177

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+ D  NRG   + N++I V+DEAD+M D+GF+P +  +   VP   Q LL
Sbjct: 178 VDILVATPGRLRDIINRGACSLENVQIAVLDEADQMADLGFLPEVTELLDQVPVGGQRLL 237

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ +E+  + + +L +P   EV+  +    T+ H  +    +   K  +   +   +
Sbjct: 238 FSATLENEIDSLVKRYLVDPVTHEVDPSAGAVTTMTHHVLVVKPK--DKAPVTAAIAARK 295

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L   G    A+HG + Q +R + L++FK+G +  +VA+
Sbjct: 296 GRT---IIFVRTQLGADRIAEQLRDAGVKADALHGGMTQGARTRTLADFKDGYVNALVAT 352

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L 
Sbjct: 353 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGVVVSLA 399


>gi|327295054|ref|XP_003232222.1| ATP-dependent RNA helicase DRS1 [Trichophyton rubrum CBS 118892]
 gi|326465394|gb|EGD90847.1| ATP-dependent RNA helicase DRS1 [Trichophyton rubrum CBS 118892]
          Length = 813

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 136/357 (38%), Positives = 200/357 (56%), Gaps = 3/357 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L  
Sbjct: 298 FQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIVPILER 357

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++ 
Sbjct: 358 LLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKR 417

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 418 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKSRQTM 477

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMT  + K+    L  P R+ V++   T  T+   FV     +  K+   L  L +
Sbjct: 478 LFSATMTSSVDKLIRLGLNKPVRLMVDSKKQTVGTLVQEFVRLRPGREDKRLGYLMFLCK 537

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  T +  I+F  QKK    +       G     +HG++ Q  R+K + +F++  +  ++
Sbjct: 538 TVYTNRV-IVFFRQKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVEDFRDAKVSYLL 596

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K +
Sbjct: 597 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVV 653


>gi|198432373|ref|XP_002121386.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           [Ciona intestinalis]
          Length = 727

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 134/360 (37%), Positives = 206/360 (57%), Gaps = 17/360 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F   G   K++ A+    + +PTPIQ + IP  +   DV GIA+TG+GKTA+F+ PML  
Sbjct: 245 FGHFGFDEKIISAIRKHNFTQPTPIQAQGIPCGMSGRDVIGIAKTGSGKTAAFIWPMLVH 304

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L+KG      P  LI+ PTREL  Q+    +++GK Y L      GG     Q 
Sbjct: 305 IMDQPELKKGDG----PVGLIVAPTRELCQQIYFECKRFGKVYGLRSVCCYGGGNMHEQQ 360

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  G ++++ TPGRI+DH  +    +  +  LV DEADRM +MGF   +++I + V  
Sbjct: 361 KGLSDGCEIVVATPGRIIDHVKKKNTNLLRVTYLVFDEADRMFEMGFEYQVRSIANHVRP 420

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRI-EVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            RQTLLFSAT    +++++ + L +P RI + +   + A+  +   V   A    K  LL
Sbjct: 421 DRQTLLFSATFRKRIERLARDILTDPVRIIQGDVGEANADVTQIVEVFKTADMKWKW-LL 479

Query: 236 QQLL--QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           ++++   S+ ++   ++F  +K N   L  +L  +G  V  IHG++ Q  R  +++NFK+
Sbjct: 480 RRIIPFTSEGSL---LVFVTKKANAEELATNLINEGHDVALIHGDMQQYDRNNVITNFKK 536

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             +  +VA+D+AARGLDIP + +V N+DV    + + HRIGRTGRAG+ G A+TLV  +D
Sbjct: 537 KQVATLVATDVAARGLDIPLIRNVINYDVARDIDTHTHRIGRTGRAGQKGTAYTLVTSKD 596


>gi|192359134|ref|YP_001980830.1| DbpA RNA binding domain family [Cellvibrio japonicus Ueda107]
 gi|190685299|gb|ACE82977.1| DbpA RNA binding domain family [Cellvibrio japonicus Ueda107]
          Length = 469

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 135/384 (35%), Positives = 221/384 (57%), Gaps = 10/384 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LS  ++  +    Y   TPIQ +++P VL   D+   A+TG+GKTA+F + +L  
Sbjct: 17  FSTLPLSRAMLDNLASLEYTSMTPIQAESLPWVLAGRDLIAQAKTGSGKTAAFGIGLLEK 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+     V+    L+L PTRELA QVA    +  +  +N+ +  L GG+    Q   LER
Sbjct: 77  LQVDSFAVQ---ALVLCPTRELADQVAKELRRLARFTHNIKILTLCGGVAIGPQLGSLER 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  +G L ++ ++ LV+DEADRMLDMGF   I  + +     RQTL
Sbjct: 134 GAHIVVGTPGRIVDHLRKGSLHLDRLQQLVLDEADRMLDMGFADDINTVIASANSERQTL 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +Q++S  + ++P R+ V +  ++ +  +H F       S+  A++  L   
Sbjct: 194 LFSATYPANIQQMSARYQRDPVRVTVESLHTSQQIRQH-FYELAEGDSRTSAVINLLAHF 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q    + +IFCN K     L   L+ +  +  A+HG+++Q+ R ++L  F   +  +++A
Sbjct: 253 QPA--STLIFCNTKAECEELADGLQAKKVAALALHGDMEQKERDRVLVRFANKSCAVLIA 310

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI D+  V N+++   +E ++HRIGRTGRAG  G A +LVA  +I  ++ +E
Sbjct: 311 TDVAARGIDIKDLDAVINYELARDSEVHVHRIGRTGRAGAEGLALSLVAPREIVRVNRLE 370

Query: 362 KLIEKKVDWL---NGDLSSLNPPL 382
             + + +      + D +SL  P+
Sbjct: 371 DYLRQTISLEAVPDSDTNSLPQPV 394


>gi|330804914|ref|XP_003290434.1| hypothetical protein DICPUDRAFT_37328 [Dictyostelium purpureum]
 gi|325079445|gb|EGC33045.1| hypothetical protein DICPUDRAFT_37328 [Dictyostelium purpureum]
          Length = 600

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 138/389 (35%), Positives = 214/389 (55%), Gaps = 21/389 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL+ K+   +    Y KPTPIQ +TIP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 29  WSQAGLTEKIHLMLKKFQYEKPTPIQSQTIPAIMSGRDLIGIARTGSGKTLAFLLPMF-- 86

Query: 63  LEKGRARVRMPRT--------LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
               R  +  P+T        LI+ PTRELA Q+    +K+ KN  L VA + GG     
Sbjct: 87  ----RHILAQPKTVPGDGMIGLIMSPTRELALQIFSECKKFTKNLGLRVACIYGGASISE 142

Query: 115 QNKKLERGADVLICTPGRILDHF---NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           Q   L+RGAD+++CTPGR++D     NR    +  +  LV+DEADRM DMGF P I  + 
Sbjct: 143 QIADLKRGADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQIMCVI 202

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSK 230
             +   RQT++FSAT   +++  ++  L  P  I     S  +  I +H  V       +
Sbjct: 203 DNIRPDRQTIMFSATFPPKVENAAKKILTKPLEIIAGGRSIVSSDIDQHVEVRPSETRFR 262

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +   L  L   +  +   +IF N+++   NL   L    +   ++HG+ DQ  R + +++
Sbjct: 263 RLIELLSLWYHKGQI---LIFTNRQETTDNLFRQLASSQYQCLSLHGSKDQTDRDETITD 319

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK     +++A+ LA+RGLDI D+  V NFD P+  E+Y+HR+GRTGRAG  G A+T + 
Sbjct: 320 FKNKVKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNKGTAYTFIT 379

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
            E+ ++  +I K +E+    +  +L  LN
Sbjct: 380 PEEERYSPSIIKALEQSGSKVPDELKKLN 408


>gi|156083731|ref|XP_001609349.1| DEAD/DEAH box helicase [Babesia bovis T2Bo]
 gi|154796600|gb|EDO05781.1| DEAD/DEAH box helicase [Babesia bovis]
          Length = 609

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 150/419 (35%), Positives = 236/419 (56%), Gaps = 27/419 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF + G+   ++  +L   Y KPTPIQ  +IP+++   D+   AQTG+GKTA+F+LP+ T
Sbjct: 151 DFEN-GIHELLMVNILRVNYTKPTPIQKHSIPVIMAGRDLMACAQTGSGKTAAFLLPICT 209

Query: 62  -ILEKG-----------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            +L+ G            +R  +P  L+L PTRELA Q      K+  N  +   +L GG
Sbjct: 210 AMLKTGPPASRPMQSSYHSRQALPVCLVLSPTRELAMQTFTEARKFIYNTGIRAVVLYGG 269

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q  +LERG D+ + TPGR+ D   R ++ ++ +  LV+DEADRMLDMGF P I+ 
Sbjct: 270 GEVRRQLYELERGCDICVATPGRLTDILERNRIGLHCVSYLVLDEADRMLDMGFAPQIRQ 329

Query: 170 I---TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
           +   +S+    RQT++FSAT   E+Q+++ +FL++   + V    ST E I    +  YA
Sbjct: 330 VVEHSSMPQEGRQTVMFSATFPKEIQQLARDFLRDYLYLAVGRVGSTNEFIRQRLL--YA 387

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              +K   L +LL+ ++T    +IF   K+    +   L K+ F    IHG+  Q+ R +
Sbjct: 388 DQEQKLHYLVKLLR-ENTNGLVLIFVETKRRADMIESYLLKENFMAVNIHGDRSQQDREE 446

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  FK G   ++VA+D+AARGLDI ++ HV N D+P   ++Y+HRIGRTGRAG  G A 
Sbjct: 447 ALRLFKTGERPILVATDVAARGLDINNITHVINCDLPANIDDYVHRIGRTGRAGNVGVAT 506

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           +LV+++D   +  +  L+E+     N ++       EK+ +A H H+       ++++G
Sbjct: 507 SLVSEKDRSILKDLLALLEEA----NQEVPQW---FEKL-VASHPHSGGGRDYGKRASG 557


>gi|312172469|emb|CBX80726.1| ATP-dependent RNA helicase dbpA [Erwinia amylovora ATCC BAA-2158]
          Length = 459

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 138/361 (38%), Positives = 210/361 (58%), Gaps = 10/361 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY+  TP+Q +++P +L   DV   A+TG+GKTA+F    L ++ +  A   + + L+L 
Sbjct: 22  GYLAMTPVQAESLPAILAGRDVRAQAKTGSGKTAAF---GLGVMHRVDASQYVTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QV     +  +   N+ +  L GG P  AQ   L     +++ TPGRILDH  
Sbjct: 79  PTRELADQVTKELRRLARFTSNIKILTLCGGQPVGAQRDSLLHAPHIVVGTPGRILDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           R  L ++ I  LV+DEADRML+MGF   I  I S  P TRQTLLFSAT    + ++S++ 
Sbjct: 139 RETLKLDAINTLVLDEADRMLEMGFREDIDAIISHSPQTRQTLLFSATWPQAIAQISQSI 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            +NP  IE    S     IE  F    A   K  AL+  L + Q +  + ++FCN K+  
Sbjct: 199 QRNPLTIETGDVSDL-PAIEQTFYEA-ASREKLTALIGLLSERQPS--SCVVFCNTKREC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            ++ ++L+K   S   +HG+++QR R ++L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 DDIAYALDKAQISAQPLHGDLEQRERDQMLIRFANGSCRVLVATDVAARGLDIKALAMVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           N+ +    E ++HRIGRT RAG+ G A + VA +++    A+E  +++K+ W N  LS+L
Sbjct: 315 NYQLSFDPEVHVHRIGRTARAGQEGCAVSFVAPDEMIRAHALEDYLQQKLLWCN--LSAL 372

Query: 379 N 379
            
Sbjct: 373 K 373


>gi|307105760|gb|EFN54008.1| hypothetical protein CHLNCDRAFT_31911 [Chlorella variabilis]
          Length = 556

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 147/421 (34%), Positives = 216/421 (51%), Gaps = 56/421 (13%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F D+ L P ++  V    Y KPTP+Q  +IP+ L   D+   AQTG+GKTA+F  P++  
Sbjct: 34  FEDVDLPPALMENVKRCKYNKPTPVQRYSIPIGLAGRDMMACAQTGSGKTAAFCFPIIGN 93

Query: 62  ILEKGRARVR-----MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           IL  G   +R      P  L+L PTREL+ Q+ D   K+     +   ++ GG P + Q 
Sbjct: 94  ILRSGYTPLRGSRKAFPLALVLSPTRELSTQIYDESRKFTYQTGVRPVVVYGGAPQQQQL 153

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV-- 174
           ++LERG D L+ TPGR++D  +R ++ +  +  L +DEADRMLDMGF P I+    L   
Sbjct: 154 RELERGCDFLVATPGRLIDIMDRARVSLGKVRFLALDEADRMLDMGFEPQIRRRGPLPGL 213

Query: 175 -------------------------------------PFTRQTLLFSATMTDELQKVSEN 197
                                                P  RQTLLFSAT   E+Q+++ +
Sbjct: 214 PRLSPSPAAAPEAWPCRRGLPRPRRNPPIVDEEDMPRPGERQTLLFSATFPKEIQRLAAD 273

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG--IIFCNQK 255
           FL N   + V    S+ + I    V  Y     K  ++  LLQ   T++ G  +IF   K
Sbjct: 274 FLHNYIFLTVGRVGSSTDLIVQ--VIEYVPIQDKRQMVLDLLQ---TLEKGLTLIFVETK 328

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           K    L   L + G    +IHG+  Q  R   L +F+ G   ++VA+D+AARGLDIP V 
Sbjct: 329 KGADALEDFLCRNGLPATSIHGDRSQAEREAALRSFRTGRTPVLVATDVAARGLDIPHVT 388

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI----KHIDAIEKLIEKKVDWL 371
           HV NFD+P+  ++Y+HRIGRTGRAG+ G A    +++D     K ++ + +  ++   WL
Sbjct: 389 HVINFDLPSDIDDYVHRIGRTGRAGKKGLATAFFSEKDTGISSKLVEILSETNQEVPAWL 448

Query: 372 N 372
            
Sbjct: 449 Q 449


>gi|73969105|ref|XP_860607.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 10 [Canis
           familiaris]
          Length = 655

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 138/386 (35%), Positives = 214/386 (55%), Gaps = 25/386 (6%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 100 PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 159

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 160 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-----T 177
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +       T
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRVCKTDDT 275

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKC 232
            QTL++SAT   E+++++E+FL++  +I V     +A     + ++ C  +   +  K  
Sbjct: 276 LQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMES--EKDHKLI 333

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L+++++  ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+
Sbjct: 334 QLMEEIMAEKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFR 391

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     
Sbjct: 392 SGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPG 451

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           ++K    + K++E+    +N  L  L
Sbjct: 452 NLKQARELIKVLEEANQAINPKLMQL 477


>gi|281201459|gb|EFA75669.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 751

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 142/421 (33%), Positives = 223/421 (52%), Gaps = 36/421 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F D+ L   +   +  A Y KPTP+Q   +P++++  D+   AQTG+GKTA+F+ P+   
Sbjct: 287 FMDIDLGDVLFKNIKYAKYTKPTPVQKSALPIIMKGRDLMACAQTGSGKTAAFLFPIISG 346

Query: 60  ---------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                    L     G  R   PR L+L PTRELA Q+ D   K+     +T  ++ GG 
Sbjct: 347 ILLDGAPEPLAAYRPGVPRPVHPRALVLAPTRELALQIYDEASKFSYGSPVTSVVVYGGA 406

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q  +L+RG D+L+ T GR++D  +RG++ + +++ LV+DEADRMLDMGF P I+ I
Sbjct: 407 EISHQIAELDRGCDILVATTGRLVDLLSRGRVSLAHVKYLVLDEADRMLDMGFEPQIRQI 466

Query: 171 T--SLVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
              + +P    RQTL+FSAT    +Q ++ +FL N   ++V    +T    +      Y 
Sbjct: 467 VVDNDMPGNRDRQTLMFSATFPKPIQNLASDFLNNYIFLKVGVIGTTQNITQRI---EYV 523

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           Q  +K + L   L +  +    +IF   K+   +L H L  +GF+   IHG++ Q  R  
Sbjct: 524 QDDEKNSYLLDFLSTLKSDGLTLIFVETKRLCDSLTHYLNTKGFASTCIHGDLSQYERES 583

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L++F+      +VA+D+A+RGL IP+V +V NFD+P     Y+HRIGRTGRAG+ G A 
Sbjct: 584 ALNSFRTNQTPYLVATDVASRGLHIPNVLYVINFDLPTDIHVYVHRIGRTGRAGKKGFAI 643

Query: 347 TLVAKEDIKHIDAIEKLIEKK----VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           +   + +      + +L+ K      DW    +S             +++++  N  PQK
Sbjct: 644 SFYNERNKSLSTDLLQLMRKSNQEVPDWFERTVS-------------YSYSKPKNTPPQK 690

Query: 403 S 403
           S
Sbjct: 691 S 691


>gi|256822194|ref|YP_003146157.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256795733|gb|ACV26389.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 458

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 129/342 (37%), Positives = 203/342 (59%), Gaps = 3/342 (0%)

Query: 24  PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRE 83
           P+ +Q K I  +L  HDV   A+TG+GKTA+F+LP++  L +  +R    R LIL PTRE
Sbjct: 26  PSEVQEKAIEPILDGHDVMVSAETGSGKTAAFLLPIIHNLLENPSRHTSTRVLILAPTRE 85

Query: 84  LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           LA Q+  +     +   +   L+IGG  ++ Q        +++I TPGR+L+H  +    
Sbjct: 86  LARQIDKHARDLTQFTQIKTGLIIGGADYKYQQAIFRDNPEIIIATPGRMLEHCEKQGAD 145

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM-TDELQKVSENFLQNP 202
           +N++E LVIDEAD+M +MGF   +Q I       RQTLLFSAT+ T  ++ +++  +  P
Sbjct: 146 LNDLEYLVIDEADKMFEMGFTDDVQAIAGFCKSDRQTLLFSATLKTKGIKHLTDYLMDEP 205

Query: 203 KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLC 262
           + I +N+  +  ++IE  F+ T      K  L Q LL +++  K  I+FCN K+ V  L 
Sbjct: 206 QAIVLNSFEAKNDSIEQ-FIITADDLVHKEKLTQWLLTNEEYRK-AIVFCNTKEQVDRLG 263

Query: 263 HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322
             +     +   +HG+I Q  R  +++ F++  I++++ASD+AARG+D+ D+  V NFD+
Sbjct: 264 GLIRYHKIAAGTLHGDISQSVRNHVMTQFRDSKIKVLIASDVAARGIDVKDIDLVINFDM 323

Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
            + AE+YIHRIGRT RAG  GKA +L++  +   +  IEK I
Sbjct: 324 AHNAEDYIHRIGRTARAGETGKAVSLISHREWNLMVTIEKAI 365


>gi|220681312|gb|ACL80032.1| vasa-like protein [Bombyx mori]
          Length = 601

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 138/378 (36%), Positives = 215/378 (56%), Gaps = 20/378 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   V+  VL AGY KPTPIQ   IP+++   D+ G AQTG+GKTA+F++P++ +
Sbjct: 182 FETANLRKYVLDNVLKAGYRKPTPIQKNAIPIMMSGRDLMGCAQTGSGKTAAFLVPIINM 241

Query: 63  L---------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
           L         E G A+   P+ +I+ PTR L  Q+ +   K+     L VA+  GG    
Sbjct: 242 LLQDPKDLISENGCAQ---PQVIIVSPTRVLTLQIFNEARKFSYGSVLKVAVAYGGTAVR 298

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT-- 171
            Q   + RG  +L+ TPGR+ D   R ++   ++  +V+DEADRMLDMGF+P I+ +   
Sbjct: 299 HQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSIEKMMLH 358

Query: 172 -SLVPFT-RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
            ++V  T RQTL+FSAT  +++Q ++  FL N   + V      +  +E  F+    +Y 
Sbjct: 359 PTMVETTKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEV-TKYE 417

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+ +L +QL++  D  K  ++F   K+N   +   L +Q     +IHG+  QR R + L 
Sbjct: 418 KRNSL-KQLIEENDG-KRILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQ 475

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           NFK G   ++VA+ +AARGLDI +V  V N+D+P   + Y+HRIGRTGR G  GKA +  
Sbjct: 476 NFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFY 535

Query: 350 -AKEDIKHIDAIEKLIEK 366
            + +D+  +  + K++ +
Sbjct: 536 DSDQDLALVADLSKILRQ 553


>gi|154279136|ref|XP_001540381.1| ATP-dependent RNA helicase ded1 [Ajellomyces capsulatus NAm1]
 gi|160380637|sp|A6R3L3|DED1_AJECN RecName: Full=ATP-dependent RNA helicase DED1
 gi|150412324|gb|EDN07711.1| ATP-dependent RNA helicase ded1 [Ajellomyces capsulatus NAm1]
          Length = 694

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 138/365 (37%), Positives = 204/365 (55%), Gaps = 18/365 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +  L   ++  ++ A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 205 FTNPPLHEHLLSNIVLARYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQ 264

Query: 62  -----------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                          GR +   P  LIL PTREL +Q+ D   K+     L   ++ GG 
Sbjct: 265 SLHTRGPEAEAARGLGRQQKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVYGGA 324

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L++G +VL+ TPGR++D   RG++ + +I+ LV+DEADRMLDMGF P I+ I
Sbjct: 325 EMGNQLRQLDQGCNVLVATPGRLVDMMERGRISLAHIQYLVLDEADRMLDMGFEPQIRRI 384

Query: 171 T--SLVP--FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
              S +P    RQTL+FSAT   ++QK++E FL++   + V    ST+E I    V   +
Sbjct: 385 VQGSDMPDKHMRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRIVECES 444

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              K  ALL  L    D+    ++F   K+    L   L        AIHG+  QR R +
Sbjct: 445 DKDKDSALLDILC--SDSTGLTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERER 502

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G   ++VA+ +AARGLDIP+V HV N+D+PN  ++Y+HRIGRTGRAG  G + 
Sbjct: 503 ALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGIST 562

Query: 347 TLVAK 351
              ++
Sbjct: 563 AFFSR 567


>gi|146104251|ref|XP_001469775.1| DEAD box RNA helicase [Leishmania infantum]
 gi|134074145|emb|CAM72887.1| putative DEAD box RNA helicase [Leishmania infantum JPCM5]
 gi|322503545|emb|CBZ38631.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 527

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 129/361 (35%), Positives = 212/361 (58%), Gaps = 5/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL  ++  A  DAG+  PT IQ   I +  +  D+ G+AQTG+GKT ++ LP++  
Sbjct: 55  FQDLGLCQELCTACADAGWQHPTRIQASAITVFAEGRDLIGVAQTGSGKTGAYALPLVNW 114

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   R    +   L++ PTRELA QV   F   G++  L VA L+GG     Q  +L + 
Sbjct: 115 LLAQRKTPYLS-VLVMVPTRELAQQVTAQFVLLGRSVGLRVATLVGGADMVEQACELSKR 173

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             V++ TPGR+ DH +  K   +  +  LV+DEAD+MLDM +   I  I   +P  R+T+
Sbjct: 174 PHVVVGTPGRVKDHLSNTKGFKLVKLHALVLDEADKMLDMDYEKEIDAILEQLPQNRRTM 233

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT++ ++ ++ +  L++P  ++V+  ++T +T++  ++  +A +++  + L   L +
Sbjct: 234 LFSATLSTKIDRLQKASLRDPVLLQVHRKNTTVDTLKQYYI--FAPFAQMLSYLHLFL-T 290

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++T  + +IFC     V  +  +L   G     + G +DQ +R   L+ FKEG +++++ 
Sbjct: 291 KETGNHILIFCRSAALVHKITLTLRILGHRALPLMGRMDQSNRNIALTKFKEGKVRMLIC 350

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A RGLDIP    V NF +P+  E+YIHR+GRT RAG  GKA  L+++ DI  +  IE
Sbjct: 351 TDVAQRGLDIPHTDVVVNFSLPDHVEDYIHRVGRTARAGAEGKAVNLISQYDIVLLQKIE 410

Query: 362 K 362
           +
Sbjct: 411 Q 411


>gi|47217137|emb|CAG02638.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 602

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 151/438 (34%), Positives = 232/438 (52%), Gaps = 36/438 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ +   ++  +  + Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 129 FQDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQ 188

Query: 63  L-----------------EKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV 103
           +                 E GR   R + P +L+L PTRELA Q+ D   K+     +  
Sbjct: 189 IYTDGPGDALQAIKSSGQENGRYGRRKQYPISLVLAPTRELALQIYDEARKFAYRSRVRP 248

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163
            ++ GG     Q + LERG  +L+ TPGR++D   RGK+ ++    LV+DEADRMLDMGF
Sbjct: 249 CVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGF 308

Query: 164 IPYIQNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
            P I+ I    ++ P   RQT++FSAT   E+Q ++ +FL++   + V    ST+E I  
Sbjct: 309 EPQIRRIVEQDTMPPKGIRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQ 368

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
             V  + +   K + L  LL +       ++F   KK    L   L ++G++  +IHG+ 
Sbjct: 369 KVV--WVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDR 426

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            QR R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR 
Sbjct: 427 SQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRV 486

Query: 340 GRHGKAFTLVAKEDIKHI-DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           G  G A +    ++     D ++ L+E K          +   LE +   +H H   N  
Sbjct: 487 GNLGLATSFFNDKNSNITKDLLDLLVEAK--------QGIPTWLESL-AYEHQHKSSNRG 537

Query: 399 IPQK-STGFDRRKKNYSS 415
             ++ S GF  R    SS
Sbjct: 538 RSKRFSGGFGARDYRQSS 555


>gi|333007298|gb|EGK26780.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-272]
 gi|333019294|gb|EGK38578.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-227]
          Length = 457

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 134/364 (36%), Positives = 211/364 (57%), Gaps = 8/364 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +    GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTSCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L +   S  ++HG++DQR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVEQSALSLHGDLDQRDRDQTLVRFANGSARVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDW 370
           K++W
Sbjct: 363 KLNW 366


>gi|157819755|ref|NP_001102328.1| hypothetical protein LOC364073 [Rattus norvegicus]
 gi|149040979|gb|EDL94936.1| rCG20177 [Rattus norvegicus]
          Length = 659

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 140/392 (35%), Positives = 220/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 180 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 239

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E G+   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 240 IYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 299

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 300 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 359

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 360 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 418

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + + K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 419 -WVEEADKRSFLLDLLNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 477

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 478 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 537

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 538 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 569


>gi|302501664|ref|XP_003012824.1| hypothetical protein ARB_01075 [Arthroderma benhamiae CBS 112371]
 gi|291176384|gb|EFE32184.1| hypothetical protein ARB_01075 [Arthroderma benhamiae CBS 112371]
          Length = 677

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 136/361 (37%), Positives = 203/361 (56%), Gaps = 23/361 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 200 FTNPPLDDHLISNIKLASYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQ 259

Query: 63  ----------------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                              GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 260 AFQNGPSPAPTQQGGQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVV 319

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 320 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQ 379

Query: 167 IQNITS---LVPFT-RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I     + P   RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 380 IRRIVEGEDMPPVAGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQ--K 437

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             Y + + K ++L  +L +       +IF   K+   +L   L  Q F   AIHG+  QR
Sbjct: 438 VEYVEDNDKRSVLLDILHTHGAGLT-LIFVETKRMADSLSEFLINQHFPATAIHGDRTQR 496

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 497 ERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 556

Query: 343 G 343
           G
Sbjct: 557 G 557


>gi|255726050|ref|XP_002547951.1| ATP-dependent RNA helicase ded1 [Candida tropicalis MYA-3404]
 gi|240133875|gb|EER33430.1| ATP-dependent RNA helicase ded1 [Candida tropicalis MYA-3404]
          Length = 665

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 136/346 (39%), Positives = 199/346 (57%), Gaps = 23/346 (6%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVR-------- 71
           + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+     G A V         
Sbjct: 206 FTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYLNGPAPVPETTGAFSS 265

Query: 72  ---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
               P  L++ PTREL +Q+ +  +K+     +   ++ GG     Q + L+RG D+L+ 
Sbjct: 266 HKVYPTILVMAPTRELVSQIYEESKKFSYRSWVRPCVVYGGADIGQQMRNLDRGCDLLVA 325

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----RQTLLFS 184
           TPGR+ D   RGK+ + NI+ LV+DEADRMLDMGF P I++I           RQTL+FS
Sbjct: 326 TPGRLKDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPEVTDRQTLMFS 385

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT   ++Q ++ +FL++   + V    ST+E I    +  Y +   K +++  LL + + 
Sbjct: 386 ATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKIL--YVEDEDKKSVILDLLAANE- 442

Query: 245 MKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             NG  I+F   K+    L   L  QGF   AIHG+  Q  R K L+ FK G   ++VA+
Sbjct: 443 --NGLTIVFTETKRMADQLADFLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPILVAT 500

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +AARGLDIP+VGHV NFD+P+  ++Y+HRIGRTGRAG  G A + 
Sbjct: 501 AVAARGLDIPNVGHVINFDLPSDIDDYVHRIGRTGRAGNVGIATSF 546


>gi|225710312|gb|ACO11002.1| Probable ATP-dependent RNA helicase DDX49 [Caligus rogercresseyi]
          Length = 454

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 148/412 (35%), Positives = 226/412 (54%), Gaps = 21/412 (5%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LGL P +       G   P P+Q +T+P +L   +  GIA+TG+GKTA+F LP+L  L +
Sbjct: 4   LGLKPWLSKQCEAIGLKSPAPVQRETVPKILDGQNGIGIAKTGSGKTAAFALPILDALSE 63

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
               +     L+L PTRELA Q+AD F+  GK  N+ V+++IGG     Q  +L     +
Sbjct: 64  DPYGIY---ALVLTPTRELAYQIADTFKILGKPLNVKVSIIIGGRDMVLQGSELASSPHI 120

Query: 126 LICTPGRILDHFNRGKLL--MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
           +I TPGR+ DH N       +  I+ LVIDEADR+L+ GF   I  I + +P +RQTLLF
Sbjct: 121 VIATPGRLADHLNTHSQSSPLKKIKFLVIDEADRLLEGGFDEAIGRIFASIPRSRQTLLF 180

Query: 184 SATMTDELQKV------SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +AT ++ L+++       E+F    +  E +    T  T++  +V T A + +   L+  
Sbjct: 181 TATHSESLKELIVANSEKEHFYY--REGEDDASGLTVNTLDQHYVLTPADF-RDAYLIGV 237

Query: 238 LLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L++ Q    N   IIF    K    L  +L K GFS  A+H    QR R++ LS F+   
Sbjct: 238 LMKIQKESPNASFIIFARTCKIAQILSLTLGKLGFSNVALHSMKPQRERLEALSRFRSHL 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++A+D+A+RGLDIP V +V N ++P  A  Y+HR+GRT RAGR G A +L+   D+ 
Sbjct: 298 AKILIATDVASRGLDIPHVEYVINHNIPTEATEYVHRVGRTARAGRRGTAISLLTPHDVL 357

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
            +++IE+LI  K+   + D  +++       + Q N  R+   I      FD
Sbjct: 358 LLESIEELIGSKLSEYSVDTKNISEI-----VVQVNVTRRETDIRLAEADFD 404


>gi|319943535|ref|ZP_08017817.1| DEAD/DEAH box helicase family protein [Lautropia mirabilis ATCC
           51599]
 gi|319743350|gb|EFV95755.1| DEAD/DEAH box helicase family protein [Lautropia mirabilis ATCC
           51599]
          Length = 872

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 136/398 (34%), Positives = 221/398 (55%), Gaps = 37/398 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL   +V A+     + P+P+Q + IP++L  +D+   A TGTGKTA+F+LP L  
Sbjct: 150 FAELGLIEPLVQALQRLDIIHPSPVQAQAIPVLLAGNDLVASAPTGTGKTAAFLLPALQG 209

Query: 63  LE-------------------------KGRARVR---MPRTLILEPTRELAAQVADNFEK 94
           +                          KGR   R    P  L+L PTRELA QV      
Sbjct: 210 VALNAQERAAEHHDAGDDDEDHRGKRGKGRRPARPAFGPSVLVLTPTRELAQQVTRTSHA 269

Query: 95  YGKNYNLTVALLI-GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVID 153
             +    T  + I GG  +  Q + L    +VL+ TPGR++D    GK+ ++ +++LV+D
Sbjct: 270 LSRLLPRTSTVCITGGSSYFHQARALAMPYEVLVATPGRLIDQLENGKIDLSRLKMLVLD 329

Query: 154 EADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
           EADRMLDMGF   +  I  ++P  RQT+ F+AT++ +++ +++  L++P+ + V      
Sbjct: 330 EADRMLDMGFSEDVFRIAEMLPTERQTVCFTATVSHDVRNLADKLLKDPQWLTVERSEEA 389

Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQS--QDT-MKNGIIFCNQKKNVVNLCHSLEKQGF 270
              I+   V     Y        QLL++   DT +   I+F   K+    L   L+ +GF
Sbjct: 390 LTPIDDHVV-----YVDNPGHRGQLLRACLNDTGLGQAIVFTATKRQAEELSEELQGEGF 444

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           +V A+HG+++QR R + L+  ++G  Q+++A+D+AARG+D+  + HV N+++P  AE+Y+
Sbjct: 445 AVDALHGDMNQRERTRALNRLRQGECQVLIATDVAARGIDVSSLTHVINYELPRVAEDYV 504

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           HRIGRTGRAG  G+A + V +ED+  +  IE  + + +
Sbjct: 505 HRIGRTGRAGASGQAISFVGREDVIPLRKIEHFLGRHI 542


>gi|315051548|ref|XP_003175148.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Arthroderma
           gypseum CBS 118893]
 gi|311340463|gb|EFQ99665.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Arthroderma
           gypseum CBS 118893]
          Length = 813

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 211/386 (54%), Gaps = 39/386 (10%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +++ GL PK +  ++D+ GY  P+PIQ  +IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 372 WSESGL-PKRLLEIIDSVGYKDPSPIQRVSIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 430

Query: 62  IL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +       E    R   P  +IL PTRELA Q+     K+    N  V  ++GG   E 
Sbjct: 431 YISSLPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEE 490

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 491 QAYNLRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 550

Query: 175 PFT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNT 209
           P +                         RQT++++ATM   +++++  +L+ P  + +  
Sbjct: 551 PVSNEKPDTEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 610

Query: 210 PSSTAETIEHC--FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
                +T+E    FVA   +  K+ A   ++L S+D     I+F N K+N   +   ++ 
Sbjct: 611 IGEAVDTVEQRVEFVAGEDKRKKRLA---EILTSRDYRPPIIVFVNIKRNCDAVARDIKH 667

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            GFS   +HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++    E
Sbjct: 668 MGFSAVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIE 727

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKED 353
           +Y HRIGRTGRAG+ G A T +  ED
Sbjct: 728 SYTHRIGRTGRAGKSGVAITFLGSED 753


>gi|156554534|ref|XP_001605420.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 775

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 149/445 (33%), Positives = 241/445 (54%), Gaps = 21/445 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F +      V+  +   G+++PT IQ +  P+ L   D+ GIAQTG+GKT +++LP  + 
Sbjct: 113 FEESNFPDYVMEEIRKQGFLEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPATVH 172

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I  + R +R   P  L+L PTRELA Q+      +G +  +    + GG P   Q + LE
Sbjct: 173 INNQPRLSRGDGPIVLVLAPTRELAQQIQSVARDFGSSSCIRNTCIFGGSPKGPQARDLE 232

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 233 RGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 292

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALL 235
           L++SAT   E+Q ++E+FL +  +I + + +  A     + IE C    + + +K   LL
Sbjct: 293 LMWSATWPKEVQALAEDFLTDYIQINIGSLNLAANHNIRQIIEIC--QEHEKENKLAVLL 350

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +++    +     IIF   KK V ++  ++++ G+   AIHG+  Q  R  +LS F+ G 
Sbjct: 351 REI--GCERGNKTIIFVETKKKVDDITKAIKRNGWPAIAIHGDKSQPERDYVLSEFRNGK 408

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+D+AARGLD+ DV +V NFD PN +E+YIHRIGRTGR    G A+      + +
Sbjct: 409 TAILVATDVAARGLDVEDVKYVVNFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNNAR 468

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQH--NHAR------KNNPIPQKSTGF 406
               +  ++E+    +N  L+ + N    +   A+   N  R      K+N +   S   
Sbjct: 469 QAKELISVLEEAGQIINPQLAEMANSQRNQYGKARQRWNQGRGNANNMKDNQMGNSSPRN 528

Query: 407 DRRKKNYSSQKSHIPLKESEKISKL 431
           +R   N+++ +SH    ++ K+S++
Sbjct: 529 NRSSPNHNNWQSHFN-HQNHKLSQM 552


>gi|109071704|ref|XP_001112413.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Macaca
           mulatta]
          Length = 648

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 139/363 (38%), Positives = 213/363 (58%), Gaps = 11/363 (3%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE----- 64
           P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT  +++P    L+     
Sbjct: 251 PEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLDLQPTL 310

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           KG+ R R P  L+L PTRELA QV     KY     L    + GG   + Q ++L +G D
Sbjct: 311 KGQ-RNR-PGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIEELRKGVD 367

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           ++I TPGR+ D      + + NI  LV+DEAD+MLDMGF P I  I   V   RQT++ S
Sbjct: 368 IIIATPGRLNDLQMNNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTS 427

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           AT    + ++++++L+ P  + V T    A  +++   + T  +  +K + +   LQ+  
Sbjct: 428 ATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEE--EKWSHMHTFLQNMS 485

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
           +    I+F ++K    +L   L     S+ ++HG+ +QR R K L NFK G +++++A+D
Sbjct: 486 STDKVIVFVSRKAVADHLSSDLILGNISIESLHGDREQRDREKALENFKTGKVRILIATD 545

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           LA+RGLD+ DV HV+NFD P   E Y+HRIGRTGRAGR G + T + + D +    +  +
Sbjct: 546 LASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINI 605

Query: 364 IEK 366
           +E+
Sbjct: 606 LER 608


>gi|21241215|ref|NP_640797.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21106527|gb|AAM35333.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 430

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 135/371 (36%), Positives = 203/371 (54%), Gaps = 14/371 (3%)

Query: 1   MDFADLGLSPKVV----CAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFV 56
           M F+DL LSP++      A+  AG   PTPIQ + IP +L   D+  +AQTG+GKT ++ 
Sbjct: 1   MSFSDLSLSPQLQPFFDTALAKAGLRTPTPIQQQAIPPMLDGRDLIAMAQTGSGKTLAYA 60

Query: 57  LPMLTILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIP 111
           LP+L   ++  A    PR    L+L PTRELAAQV D   +   +    L   +  GG  
Sbjct: 61  LPLLQ--QRCLAPDTAPRVLGALVLVPTRELAAQVEDALRQLAAHLPRRLKSVVATGGSS 118

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q   L  GAD+++ TPGR+LD      L +N +  LV+DEADR+L++GF   +  I 
Sbjct: 119 INPQLLALRGGADLVVATPGRLLDLVEHNALRLNGVTTLVLDEADRLLELGFGAELDRIL 178

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +L+P  RQT+LFSAT    +  +++  L++P R+ ++     A  I  C +A  A   ++
Sbjct: 179 ALLPAQRQTVLFSATFPPAIASLAKRRLRDPLRVTIDATPEQAPAIAQCAIAVDA--GQR 236

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL+ LLQ +      ++F   + +   +   L K G +   +HG + Q  R + L  F
Sbjct: 237 TQLLRHLLQ-EHAWPQLLVFVASRHSADKVAEKLSKTGIAALPLHGELSQGRRERTLRAF 295

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K+  +Q++VA+DLA RG+DI  +  V N+D+P    +Y HRIGRT RAG  G A + V  
Sbjct: 296 KQADVQVLVATDLAGRGIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGVAISFVTA 355

Query: 352 EDIKHIDAIEK 362
           +  +    IEK
Sbjct: 356 DSAQQWRLIEK 366


>gi|150016621|ref|YP_001308875.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903086|gb|ABR33919.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 369

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 215/375 (57%), Gaps = 6/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LGLS  ++  +  +G   PTPIQ ++IP +    DV   A TGTGKT +F+LP+L
Sbjct: 1   MNFKQLGLSDDLIKILNKSGIADPTPIQKQSIPKIRDGKDVIAEAATGTGKTLAFLLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E   ++    + LIL PTRELA Q+ +   K  +  ++ +  + GG    +Q KKL 
Sbjct: 61  ---ENINSKSNEIQALILTPTRELAIQITNEANKLKEFNDINILPVYGGKDIASQLKKLN 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH  R  + ++ ++  ++DEAD+ML MGF   +++I S +P  +Q 
Sbjct: 118 NNIHLIIATPGRLLDHLERKTIDLSKLKTFILDEADQMLLMGFKNEVESIISKMPRKKQL 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+   ++K++  ++++P  + +     + + IE   V T     K+ AL + L +
Sbjct: 178 LCFSATIDSSVKKLAYRYMKDPIEVFIKQDDISLDAIEQDIVET-TDRKKRDALCKVLDE 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               M   IIFC  K+ V  L   L  + ++   +H +I Q  R +I+ +F+   IQ ++
Sbjct: 237 DNPFM--AIIFCRTKRRVDELEAVLHTRKYNCEKLHSDIPQNKRERIMKSFRNAEIQYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + H++N+D+P   E+YIHRIGRTGRAG  G     +  ++IK ++ I
Sbjct: 295 ATDVAARGLDINGITHIYNYDIPESVESYIHRIGRTGRAGESGYTCMFIDPKNIKDVNEI 354

Query: 361 EKLIEKKVDWLNGDL 375
           E  I  K+   N ++
Sbjct: 355 EGAIGFKIRRRNVEI 369


>gi|71895253|ref|NP_001025971.1| ATP-dependent RNA helicase DDX3X [Gallus gallus]
 gi|60098425|emb|CAH65043.1| hypothetical protein RCJMB04_2a4 [Gallus gallus]
          Length = 651

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 218/392 (55%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 174 FSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 233

Query: 63  L-------------EKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
           +             E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 234 IYADGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVY 293

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 294 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 353

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 354 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 412

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + +   K + L  LL +       ++F   KK    L   L  +G++  +IHG+  QR 
Sbjct: 413 -WVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRD 471

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 472 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 531

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 532 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 563


>gi|10039333|dbj|BAB13309.1| PL10-related protein PoPL10 [Ephydatia fluviatilis]
          Length = 491

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 138/363 (38%), Positives = 204/363 (56%), Gaps = 20/363 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS  +   V    Y KPTP+Q   +P++L + D+   AQTG+GKTA+F++P+L +
Sbjct: 34  FSDCQLSEIIQLNVELTHYSKPTPVQKHALPIILSKRDLMACAQTGSGKTAAFLIPILDL 93

Query: 63  L-------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
           +               GR R + P  L+L PTRELA Q+ +   K+     +   ++ GG
Sbjct: 94  VFQQGCPRPPSDSRYSGR-RKQYPTALVLGPTRELAVQIFEEARKFSYRSRVRPCVVYGG 152

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
               AQ + LE G  +L+ TPGR++D   RGK+ ++ +  LV+DEADRMLDMGF P I+ 
Sbjct: 153 ADIGAQMRDLEHGCHLLVATPGRLVDMMERGKIGLDGVRYLVLDEADRMLDMGFEPQIRR 212

Query: 170 ITS--LVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I    ++P T  RQTL+FSAT   E+Q ++ +FL +   + V    ST++ I    V  +
Sbjct: 213 IVEQDVMPKTGDRQTLMFSATFPKEIQMLARDFLHDYIFLAVGRVGSTSQNITQKVV--W 270

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
                K + L  LL +       ++F   KKN   L + L  QG+S   IHG+  Q  R 
Sbjct: 271 VDECDKRSFLLDLLNASAPDTLTLVFVETKKNCDALDNFLYTQGYSCTCIHGDRTQGERE 330

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L +F+   + ++VA+ +AAR LDIP+V HV NFD+P   E Y+HRIGRTG+ G  G A
Sbjct: 331 QALHSFRTARMPILVATAVAARSLDIPNVKHVVNFDMPADIEEYVHRIGRTGKVGNLGLA 390

Query: 346 FTL 348
            + 
Sbjct: 391 TSF 393


>gi|293349333|ref|XP_001060057.2| PREDICTED: rCG25924-like [Rattus norvegicus]
 gi|149019091|gb|EDL77732.1| rCG25924 [Rattus norvegicus]
          Length = 620

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 134/359 (37%), Positives = 211/359 (58%), Gaps = 5/359 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT S+++P    L+     
Sbjct: 225 PEVMENIKRAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLSYLMPGFIHLDSQPLE 284

Query: 70  VR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
            R  P  L+L PTRELA QV     KY    +L    + GG   + Q + + +G D++I 
Sbjct: 285 QRNGPGMLVLTPTRELALQVEAECSKYSYG-DLKSVCVYGGGDRDGQIQDVSKGVDIIIA 343

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR+ D      + + ++  LV+DEAD+MLDMGF P I  I   V   RQT++ SAT  
Sbjct: 344 TPGRLNDLQMNNFVNLKSVTYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTIMTSATWP 403

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
             ++++++++L+ P  + V T    A  T++   + T  +  +K   +Q  L++      
Sbjct: 404 YAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIITTEE--EKRTHIQTFLENMSPKDK 461

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            I+F ++K    +L   L  +  SV ++HGN +Q  R K L NFK G +++++A+DLA+R
Sbjct: 462 VIVFVSRKAVADHLSSDLILRHISVESLHGNREQSDREKALENFKTGKVRILIATDLASR 521

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           GLD+ D+ HV+N+D P   E Y+HR+GRTGRAGR G + TL+ + D +    +  ++E+
Sbjct: 522 GLDVHDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGMSITLITRNDWRIATELINILER 580


>gi|326473339|gb|EGD97348.1| ATP-dependent RNA helicase DRS1 [Trichophyton tonsurans CBS 112818]
          Length = 700

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 135/357 (37%), Positives = 201/357 (56%), Gaps = 3/357 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L  
Sbjct: 298 FQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIVPILER 357

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++ 
Sbjct: 358 LLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKR 417

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 418 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKSRQTM 477

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMT+ + K+    L  P R+ V++   T  T+   FV     +  K+   L  L +
Sbjct: 478 LFSATMTNSVDKLIRVGLNKPVRLMVDSKKQTVGTLVQEFVRLRPGREDKRLGYLMFLCK 537

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  + +  I+F  QKK    +       G     +HG++ Q  R+K + +F++  +  ++
Sbjct: 538 TVYSNRV-IVFFRQKKEAHRVRIVFGLMGLKAAELHGSMSQEQRIKSVEDFRDAKVSYLL 596

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K +
Sbjct: 597 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVV 653


>gi|302543660|ref|ZP_07296002.1| putative ATP-dependent RNA helicase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461278|gb|EFL24371.1| putative ATP-dependent RNA helicase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 736

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 128/347 (36%), Positives = 193/347 (55%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL  ++V  +   G   P PIQ  TIP  +   D+ G  +TG+GKT SF LP+LT 
Sbjct: 65  FAELGLPEQIVRKLAQNGVTTPFPIQAATIPDAMAGKDILGRGRTGSGKTLSFGLPLLTS 124

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G    + PR LIL PTRELA QV+D  + YG    L + ++ GG     Q   LERG
Sbjct: 125 LAGGHTEKKRPRGLILTPTRELAMQVSDALQPYGDVLGLKLKVVCGGTSMGNQIYALERG 184

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+ D  +RG   ++ +++ V+DEAD+M DMGF+P +  I  LVP   Q LL
Sbjct: 185 VDILVATPGRLRDIIDRGAATLDKVQVAVLDEADQMADMGFLPEVTEILDLVPQGGQRLL 244

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ +E+  + + +L +P   EV++      T+ H  +       K  A +   + ++
Sbjct: 245 FSATLENEIDSLVKRYLVDPVTHEVDSAQGAVTTMTHHVLVV---KPKDKAPVTAAIAAR 301

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L   G    A+HG + Q +R + L++FK+G + ++VA+
Sbjct: 302 KGRT--IIFVRTQLGCDRVAEQLCDAGVRADALHGGMTQGARTRTLADFKDGYVNVLVAT 359

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+ +  +  V N D     ++Y+HR GRT RAG+ G   +L 
Sbjct: 360 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGQSGTVVSLA 406


>gi|330826208|ref|YP_004389511.1| DEAD/DEAH box helicase domain-containing protein [Alicycliphilus
           denitrificans K601]
 gi|329311580|gb|AEB85995.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           K601]
          Length = 590

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 145/411 (35%), Positives = 225/411 (54%), Gaps = 56/411 (13%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCG-------IAQTGTGKTASF 55
           F  LGL+P++V AV D GY +PT +Q K IPL +   DV G        +QTG+GKTA+F
Sbjct: 33  FVRLGLAPELVQAVADLGYTQPTAVQEKAIPLAMGAADVAGRFIDLMVSSQTGSGKTAAF 92

Query: 56  VLPMLTILEKGRA---------------------------------------RVRMPRTL 76
           +LP+L  L + +A                                       +   P  L
Sbjct: 93  LLPVLHTLIQQQADADAAARAEFERAAADAAARGEAPPKRSKRKNPTHPRNFKAATPGAL 152

Query: 77  ILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           +L PTRELA QVA D  E       L +A ++GG+P++ Q  +L+  A++++ TPGR+LD
Sbjct: 153 VLCPTRELAQQVAHDAIELVKHCKGLRIANVVGGMPYQLQIARLQN-ANLVVATPGRLLD 211

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
                ++ ++ ++ LV+DEADRMLD+GF   +  I  L    +QT++FSAT    +Q+++
Sbjct: 212 LQRSMQIKLDQVQFLVVDEADRMLDLGFSDDLAEINQLTSERKQTMMFSATFAPRIQQLA 271

Query: 196 ENFLQ----NPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQSQDTMKNGII 250
              +     + K+++++TP      I+   + A  AQ+ +K  LL   L+   ++   I+
Sbjct: 272 MRVMHEGGASVKKVQIDTPQEKHANIKQMLYWADNAQHKRK--LLDHWLRDA-SIGQAIV 328

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F + +     L + L++ GFS  A+HG + Q  R + L   + G +Q++VA+D+AARG+D
Sbjct: 329 FASTQVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGID 388

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +P + HVFNF +P +AE+Y HRIGRTGRAGR G A T     D + I  IE
Sbjct: 389 VPSITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIE 439


>gi|281182808|ref|NP_001162410.1| probable ATP-dependent RNA helicase DDX43 [Papio anubis]
 gi|163781000|gb|ABY40781.1| DEAD box polypeptide 43 (predicted) [Papio anubis]
          Length = 648

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 139/363 (38%), Positives = 213/363 (58%), Gaps = 11/363 (3%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE----- 64
           P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT  +++P    L+     
Sbjct: 251 PEVMKNIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLDLQPTL 310

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           KG+ R R P  L+L PTRELA QV     KY     L    + GG   + Q ++L +G D
Sbjct: 311 KGQ-RNR-PGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIEELRKGVD 367

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           ++I TPGR+ D      + + NI  LV+DEAD+MLDMGF P I  I   V   RQT++ S
Sbjct: 368 IIIATPGRLNDLQMNNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTS 427

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           AT    + ++++++L+ P  + V T    A  +++   + T  +  +K + +   LQ+  
Sbjct: 428 ATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEE--EKWSHMHTFLQNMS 485

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
           +    I+F ++K    +L   L     S+ ++HG+ +QR R K L NFK G +++++A+D
Sbjct: 486 STDKVIVFVSRKAVADHLSSDLILGNISIESLHGDREQRDREKALENFKTGKVRILIATD 545

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           LA+RGLD+ DV HV+NFD P   E Y+HRIGRTGRAGR G + T + + D +    +  +
Sbjct: 546 LASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINI 605

Query: 364 IEK 366
           +E+
Sbjct: 606 LER 608


>gi|312883052|ref|ZP_07742783.1| ATP-dependent RNA helicase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369212|gb|EFP96733.1| ATP-dependent RNA helicase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 443

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 136/388 (35%), Positives = 207/388 (53%), Gaps = 10/388 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    +   T IQ + IP+ +   D+   ++TG+GKT +FVLP+L
Sbjct: 1   MQFKDLGLDNRLLKNLKHFDFKNATKIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K ++   + PR LIL PTRELA QV    +      +   +L++GG  F  Q K L
Sbjct: 61  HKSLKNKSFSAKDPRALILAPTRELAKQVYGELKSMLGGLSYDASLIVGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGR+ DH     L ++ +E LV+DEADRMLD+GF P ++ I       R 
Sbjct: 121 RRYPKFIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHMAAKHRRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+   ++  ++   L  PKRI ++  S+  + I   F         K +LL++
Sbjct: 181 QTLMFSATLDHADVNDIALEMLDAPKRIAIDIGSAEHKDISQKFYLC-DHLDHKESLLER 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +Q  +  K  IIF   + +   L   L   G    A+ G++ Q  R  I+S F+    +
Sbjct: 240 AIQEAN-YKQLIIFTATRVDTERLTEKLNSDGLKAIALSGSLTQTQRNTIMSQFERAVFK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLDI +V HV NFD+P   E Y+HR+GRTGRAG  G A + V  +D    
Sbjct: 299 ILVTTDIASRGLDIANVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISFVGPKDWDSF 358

Query: 358 DAIEKLIEKKV-----DWLNGDLSSLNP 380
             +E  +++ +     D L G    L P
Sbjct: 359 KRVETYLQQDINFSQFDGLEGKFKGLKP 386


>gi|310658279|ref|YP_003936000.1| ATP-dependent RNA helicase, dead/deah box family [Clostridium
           sticklandii DSM 519]
 gi|308825057|emb|CBH21095.1| atp-dependent rna helicase, dead/deah box family [Clostridium
           sticklandii]
          Length = 423

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 129/364 (35%), Positives = 205/364 (56%), Gaps = 10/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG++   +  + +    KPT IQ + IPL+L+  D+ G AQTGTGKT +FVLP++ +
Sbjct: 4   FYDLGINTDNIDKLRNMYITKPTKIQEQAIPLILKGKDIIGKAQTGTGKTLAFVLPLIQM 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++    + +P+ LIL PTRELA Q+    E+  K+    V  + GG   E Q  +L+  
Sbjct: 64  LDEN---ISIPQVLILTPTRELALQITTVVEELLKDSAFDVVSVYGGHDVEKQKNQLKNN 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A  ++ TPGRILDH   G +   N++ +VIDEAD+M+  GF+  +  +    P   Q ++
Sbjct: 121 AQFVVGTPGRILDHIREGSINFKNLKHVVIDEADQMMAFGFMEDLDLLFDKTPQKIQKMI 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ D ++K++   + N   I+++  S   + I    V T  +       LQ L  + 
Sbjct: 181 FSATIPDMIRKLARKIMNNAINIDIDPESVVIDNIRQVVVRTTEERR-----LQSLEMAL 235

Query: 243 DTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              K    +IFC  K+    L  ++    + V  +HG+  Q  R  I+  F+E     +V
Sbjct: 236 KEFKPFMAMIFCKSKERANELYDNMVNLRYDVEILHGDFSQNKRENIMKRFRELKFPFLV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D++ARG+DI  + HVFN+D+P + E YIHR+GRTGRAG  G A + VA ++++ +  I
Sbjct: 296 TTDISARGMDIDGITHVFNYDIPRQIEYYIHRVGRTGRAGEKGIAVSFVADKEVEQMKKI 355

Query: 361 EKLI 364
           +K +
Sbjct: 356 QKTV 359


>gi|46907469|ref|YP_013858.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093505|ref|ZP_00231267.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 4b
           H7858]
 gi|226223849|ref|YP_002757956.1| ATP-dependent RNA helicase (DEAD motif) [Listeria monocytogenes
           Clip81459]
 gi|254824696|ref|ZP_05229697.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J1-194]
 gi|254852700|ref|ZP_05242048.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL R2-503]
 gi|254932440|ref|ZP_05265799.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HPB2262]
 gi|255522060|ref|ZP_05389297.1| ATP-dependent RNA helicase (DEAD motif) [Listeria monocytogenes FSL
           J1-175]
 gi|300765280|ref|ZP_07075264.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N1-017]
 gi|46880737|gb|AAT04035.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47018123|gb|EAL08894.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 4b
           H7858]
 gi|225876311|emb|CAS05020.1| Putative ATP-dependent RNA helicase (DEAD motif) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606021|gb|EEW18629.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL R2-503]
 gi|293583997|gb|EFF96029.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HPB2262]
 gi|293593935|gb|EFG01696.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J1-194]
 gi|300513963|gb|EFK41026.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N1-017]
 gi|332311691|gb|EGJ24786.1| ATP-dependent RNA helicase dbpA [Listeria monocytogenes str. Scott
           A]
          Length = 470

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 136/367 (37%), Positives = 208/367 (56%), Gaps = 17/367 (4%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +L LS ++  A+ + GY + TP+Q   IP+ L   D+   +QTG+GKTA+F +P+   +E
Sbjct: 3   NLKLSEEIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQIE 62

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
               +   P+ LI+ PTRELA QV       G+   +  A + G  PF  Q  +L +   
Sbjct: 63  WEENK---PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNH 119

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGR+LDH  +G L ++ +  LV+DE D ML MGFI  +++I S +P  RQ L FS
Sbjct: 120 IVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFS 179

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           ATM +E+Q + + +  +P  IE+   S     I H  +    Q   K   L+ +L +++ 
Sbjct: 180 ATMPEEMQDLIKRYQDDPMVIEM--ASEKTNPIFHVEM----QTDNKEKTLKDVLITENP 233

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             + IIFCN K  V  L   L+     V  IHG + Q  R + + +FK G  + ++A+D+
Sbjct: 234 -DSAIIFCNTKNQVDELTDLLD---VKVSKIHGGLRQEDRFRAMDDFKSGKSRFLIATDV 289

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL- 363
           A RG+D+ +V  V N+D+P   ENY+HRIGRTGRAG+ GKA + V   +   +  IE++ 
Sbjct: 290 AGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEML 349

Query: 364 ---IEKK 367
              IEKK
Sbjct: 350 DVTIEKK 356


>gi|284046175|ref|YP_003396515.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
 gi|283950396|gb|ADB53140.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
           14684]
          Length = 460

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 136/381 (35%), Positives = 204/381 (53%), Gaps = 10/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG S  VV A+   G     PIQ   +P VL  HDV   + TG+GKT +F +P++  
Sbjct: 5   FADLGSSNAVVTALTKRGIATAFPIQELVVPDVLAGHDVLIQSPTGSGKTLAFGVPLMDR 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    R   P  L+L PTRELA Q+ D   +      L++  + GG+  E Q +   R 
Sbjct: 65  IEATDKR---PSALVLAPTRELALQIVDETREIAHARALSITAVYGGVGLERQARNAAR- 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +L+ TPGR+ D   R    + N+++L++DEADRMLDMGF P +  I       RQT+L
Sbjct: 121 SHILVATPGRLEDLLQRRAFTLANVKLLILDEADRMLDMGFRPAVDRIVKATNANRQTML 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  E+ +++  +  + +R E+         I+H F+    ++ K   L+Q+L    
Sbjct: 181 FSATLKGEVDRIANEYTHDARRHELAPAPERVADIDHRFLPVLHEH-KLDHLVQELRHHG 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   ++F   K+    L   L  Q     A+HG+  Q  R + LS F+ G + ++VA+
Sbjct: 240 RGLT--LVFVRTKRGADRLVKRLRAQNVESVAMHGDKTQGQRERALSRFERGEVDVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID--AI 360
           D+AARG+D+  V HV NFD P   E Y+HRIGRTGRAG  G   T V  +  K +   A+
Sbjct: 298 DVAARGIDVNGVSHVINFDAPEDREGYVHRIGRTGRAGATGIGVTFVMADQAKDMGKIAV 357

Query: 361 EKLIEKKVDWLNGDLSSLNPP 381
           E  +E++ +   G    + PP
Sbjct: 358 ELGLEREFEQ-TGFAIDVAPP 377


>gi|254519619|ref|ZP_05131675.1| DEAD/DEAH box helicase domain-containing protein [Clostridium sp.
           7_2_43FAA]
 gi|226913368|gb|EEH98569.1| DEAD/DEAH box helicase domain-containing protein [Clostridium sp.
           7_2_43FAA]
          Length = 370

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 213/366 (58%), Gaps = 8/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F DL ++ K+V  +   G   PT +Q+  IP ++ ++DV G ++TG+GKT +F+LP+L
Sbjct: 1   MNFKDLKINTKLVDELKKNGITTPTKVQVNVIPEIINKNDVIGKSKTGSGKTLAFLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I++   +  +    LIL PTRELA Q+ +   K+  N ++ +    GG    +Q KKL 
Sbjct: 61  QIID---SNSKSTEVLILSPTRELAIQITEEANKFNIN-DIGILAAYGGKDVGSQLKKLN 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G +++I TPGR+LDH  R  + ++ +  +VIDEAD+ML MGF   I+ I S  P   QT
Sbjct: 117 KGINLIIATPGRLLDHLERKSINLSKLNTVVIDEADQMLLMGFRNEIEKIMSYAPKKLQT 176

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVN-TPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           L FSAT+  +++K++  ++ NP  I++     S    I+   V T  ++ K  AL++ L 
Sbjct: 177 LCFSATIDSKVKKLAYRYMNNPTIIDITENEESEIPNIKQEVVKTTDRW-KVDALVKILE 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +    M   IIFC  K+    L   L  +G     IH ++ Q  R KI+ +F++  IQ +
Sbjct: 236 EDNPFM--SIIFCRTKRRADELEVKLAAKGIKAAKIHSDVPQNKREKIMKSFRDCEIQFL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RG+D+  V H++N+D P   E+YIHRIGRT RAG  G    +   ++   ++ 
Sbjct: 294 IATDVASRGIDVTGVTHIYNYDAPESVESYIHRIGRTARAGDSGYTCLITDPKNYTILEE 353

Query: 360 IEKLIE 365
           IE  ++
Sbjct: 354 IENYLQ 359


>gi|255307197|ref|ZP_05351368.1| ATP-dependent RNA helicase [Clostridium difficile ATCC 43255]
          Length = 497

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 218/371 (58%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L+ K++ ++   GY  P+ +Q + IP +L+  ++   ++TG+GKTASF +P+   
Sbjct: 5   FEKFKLNEKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLC-- 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E         + LI+ PTRELA QV D     G+   +  + + G    + Q  +L++ 
Sbjct: 63  -ENINVDYNNIQALIVVPTRELALQVKDEISDIGRLKKVRCSAIFGKQSIKDQIAELKQR 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH NRG + + N++ LVIDEAD+M + GF+  ++ I   +P  +   L
Sbjct: 122 VHIVVATPGRILDHINRGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVSL 181

Query: 183 FSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           FSAT+ +E++ + E ++ +     IE N   +  +T +       A   +K  LL++L+ 
Sbjct: 182 FSATIDEEIKYICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYILLKELIY 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++  K+ +IFCN K+ V  L + + K+GF +  +H ++ Q  R+ ++ +FK     ++V
Sbjct: 242 SENP-KSVVIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQKFNILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +SD+A+RG+ I D+  V N+DVP   ENYIHRIGRTGR G  GKA T+V ++D K+I+ I
Sbjct: 301 SSDVASRGIHIDDISLVINYDVPQDKENYIHRIGRTGRKGNSGKAITIVTEKDEKYIENI 360

Query: 361 EKLIEKKVDWL 371
           E  I  K++ L
Sbjct: 361 ETYIGYKINEL 371


>gi|59713736|ref|YP_206511.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|59481984|gb|AAW87623.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 460

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 134/388 (34%), Positives = 210/388 (54%), Gaps = 10/388 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +       PT IQ K +P+ +   DV   ++TG+GKT +FVLPML
Sbjct: 16  LQFKDLGLDNRLLKNLAHQNIKTPTEIQRKAVPVAIAGKDVLASSKTGSGKTLAFVLPML 75

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K ++  +  PR +IL PTRELA QV  +             L+ GG  F  Q   L
Sbjct: 76  HKSLKTKSFSKNDPRAVILAPTRELAKQVYSHLRAMLGGLTYDATLITGGENFNDQVNAL 135

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            +    ++ TPGR+ DH     L ++ +E L++DEADRMLD+GF  ++Q I       R 
Sbjct: 136 RKHPKFIVATPGRLADHLEHQSLYLDGLETLILDEADRMLDLGFAEHLQKIHKAASHRRR 195

Query: 179 QTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+  D + K + N L NPKRI V   +   + I   F         K A+L +
Sbjct: 196 QTLMFSATLDHDAVNKFAGNMLDNPKRISVGLSNDEHKDITQRFYLC-DHLDHKQAILNK 254

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++++D  +  +IF   + +   L   L ++     A+ G+++Q +R  I+S F+    +
Sbjct: 255 IIETEDYFQI-MIFTATRSDTDRLTKLLNEENLKAVALSGDMNQTARNNIMSQFERRVHK 313

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLD+  V HV NFD+P   E Y+HR+GRTGRAG+ G A +LV  +D +  
Sbjct: 314 ILVTTDVASRGLDLTSVTHVINFDMPKHMEEYVHRVGRTGRAGKKGTAISLVGPKDWESF 373

Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNP 380
             +E  +++ + +     L G    L P
Sbjct: 374 KRVETFLQQDLSFSVFEELKGKFKGLKP 401


>gi|302662748|ref|XP_003023025.1| hypothetical protein TRV_02846 [Trichophyton verrucosum HKI 0517]
 gi|291187001|gb|EFE42407.1| hypothetical protein TRV_02846 [Trichophyton verrucosum HKI 0517]
          Length = 677

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 136/361 (37%), Positives = 203/361 (56%), Gaps = 23/361 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 200 FTNPPLDDHLISNIKLASYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQ 259

Query: 63  ----------------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                              GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 260 AFQNGPSPAPTQQGGQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVV 319

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 320 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQ 379

Query: 167 IQNITS---LVPFT-RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I     + P   RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 380 IRRIVEGEDMPPVAGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQ--K 437

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             Y + + K ++L  +L +       +IF   K+   +L   L  Q F   AIHG+  QR
Sbjct: 438 VEYVEDNDKRSVLLDILHTHGAGLT-LIFVETKRMADSLSEFLINQHFPATAIHGDRTQR 496

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 497 ERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 556

Query: 343 G 343
           G
Sbjct: 557 G 557


>gi|291613137|ref|YP_003523294.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291583249|gb|ADE10907.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 475

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 130/369 (35%), Positives = 208/369 (56%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LSP ++  +    Y   TPIQ +++P+ L  +D+   A+TG+GKTA+F LP+LT 
Sbjct: 20  FNELPLSPALLANLQQLEYRTMTPIQAESLPITLAGNDLIAQAKTGSGKTAAFALPLLTN 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L   R  V+    ++L PTRELA QV     +  +   N+ +  L+GG     Q   LE 
Sbjct: 80  LNPRRFAVQ---AMVLCPTRELADQVTQELRRLARFADNIKILSLVGGSTMRPQRDSLEH 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  RG L ++ +  LV+DEADRMLDMGF   I  +    P  RQT+
Sbjct: 137 GAHIVVGTPGRIMDHLERGSLKLDALNTLVLDEADRMLDMGFYDDIAFVVKHCPAQRQTM 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + ++++ F++ P+ +++      ++  +  +   + +  +  A L +  + 
Sbjct: 197 LFSATYPEGIARLAQKFMRKPQEVKLPEQHEGSKIRQRFYEVKHEERLQAVATLLKHYRP 256

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+     FCN K+   +L   L  +G     ++G+++QR R ++L  F   +  ++VA
Sbjct: 257 VSTLA----FCNTKQQCRDLLDVLHAEGIHALTLNGDMEQRERDQVLIQFANRSCSVLVA 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E +IHRIGRTGRA   G A +L +  D+  I  I 
Sbjct: 313 TDVAARGLDIAQLEAVINVDVTPDPEIHIHRIGRTGRADAEGWALSLASPADMHRISNIA 372

Query: 362 KLIEKKVDW 370
           K++  + +W
Sbjct: 373 KMVGSEPEW 381


>gi|157108214|ref|XP_001650127.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|65306807|gb|AAY41941.1| vasa-like protein [Aedes aegypti]
 gi|108879362|gb|EAT43587.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 638

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 134/358 (37%), Positives = 204/358 (56%), Gaps = 13/358 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL   ++  +  + Y KPTPIQ   IP+++ + D+   AQTG+GKTA+F+LPM+  
Sbjct: 217 FGDSGLRDYLLQNIRKSHYTKPTPIQKYAIPIIMDKRDLMACAQTGSGKTAAFLLPMINT 276

Query: 63  LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L    A +    P  +I+ PTRELA Q+ +   K+     L V +  GG     Q   ++
Sbjct: 277 LLNDNADMVPGNPFVVIIAPTRELALQIFNEARKFALGTVLKVCVAYGGTATRHQMDNIQ 336

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ---NITSLVP-F 176
            G  +L+ TPGR+LD  ++  +    ++ +V+DEADRMLDMGF+P ++   N  ++ P  
Sbjct: 337 NGCHILVATPGRLLDFVDKQAVTFERVKFVVLDEADRMLDMGFMPSVEKMMNHETMRPKE 396

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK--KCAL 234
            RQTL+FSAT   E+Q+++  FL N   + V      +  +E     T  Q SK  K   
Sbjct: 397 ERQTLMFSATFPAEIQELAGQFLNNYIFVAVGIVGGASTDVEQ----TIHQVSKFQKRKK 452

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L++LL++ D     ++F   K+N   L   L +  F   +IHG+  QR R + L +FK G
Sbjct: 453 LEELLEADDPTGT-LVFVETKRNADYLASLLSETKFPTTSIHGDRLQREREEALRDFKSG 511

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            + +++A+ +AARGLDI +V HV N+D+P   ++Y+HRIGRTGR G  GKA +    E
Sbjct: 512 KMFILIATSVAARGLDIKNVAHVVNYDLPKSIDDYVHRIGRTGRVGNKGKATSFYDME 569


>gi|319775175|ref|YP_004137663.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
 gi|329122905|ref|ZP_08251476.1| ATP-dependent RNA helicase RhlB [Haemophilus aegyptius ATCC 11116]
 gi|317449766|emb|CBY85973.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
 gi|327471836|gb|EGF17276.1| ATP-dependent RNA helicase RhlB [Haemophilus aegyptius ATCC 11116]
          Length = 415

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 213/368 (57%), Gaps = 10/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSALPLHPIVRDALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   +    +   PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 71  LLTHQDPNLKYPHPRALILVPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQAI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177
           E G D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P    
Sbjct: 131 ECGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           R T+LFSAT++ ++++++   + +P+ IE+     T   I E  F   Y     K ALL 
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELF---YPSNQDKMALLL 247

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ +   +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G +
Sbjct: 248 TLMEDE-WPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDL 306

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   +
Sbjct: 307 DILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMN 366

Query: 357 IDAIEKLI 364
           + AIE+ I
Sbjct: 367 LPAIEEYI 374


>gi|290559021|gb|EFD92400.1| DEAD/DEAH box helicase domain protein [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 434

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 130/383 (33%), Positives = 220/383 (57%), Gaps = 8/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + +  ++V ++   G+ +PT +Q + IP  L+  DV   ++TG+GKTA+F++P++  
Sbjct: 2   FDSMNIKKEIVDSLNAMGFKEPTEVQKQAIPPGLEGRDVIVKSKTGSGKTAAFLIPIINN 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K       P  +++ PTRELA QV D  ++ G N  +    + GG     Q + +  G
Sbjct: 62  LKKSH----YPSAMVIVPTRELAMQVTDVAKQIGHNIGIRTFTVYGGASINIQIEAIRAG 117

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++++ TPGR++D   RG+L  + I+ LV+DE D MLDMGFI  ++ I S +P  +QT+ 
Sbjct: 118 VNIIVGTPGRVIDLIKRGELPTDQIKFLVLDEFDIMLDMGFIDDVKYILSKIPQEKQTMF 177

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  E++ V+  + +NP  I +++   T +TIEH +  + A+ + K   L   + ++
Sbjct: 178 FSATIPSEIRAVTNKYTKNPIIINIDSKEVTVDTIEHYY--SIARVADKFLTLLAYIDTK 235

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  I+FC  + N   +   L K G     +HG + Q  R   LS FK GT ++++A+
Sbjct: 236 KP-KKSIVFCRTQINAERIHTILRKVGIPAVLMHGGLSQSRREHSLSLFKSGT-EMLIAT 293

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           ++A+RGLDI +V  + NFD     + Y+HR+GRT R G+ G+AFT++   +   +  IE 
Sbjct: 294 NVASRGLDIDNVSDIINFDAEEDPKAYVHRVGRTARMGKSGRAFTILTPRERYLVYDIES 353

Query: 363 LIEKKVDWLNGDLSSLNPPLEKI 385
             + K++ L  DLSS    ++ I
Sbjct: 354 YAKIKMNLLEFDLSSYKEKMKGI 376


>gi|300781219|ref|ZP_07091073.1| ATP-dependent RNA helicase RhlE [Corynebacterium genitalium ATCC
           33030]
 gi|300532926|gb|EFK53987.1| ATP-dependent RNA helicase RhlE [Corynebacterium genitalium ATCC
           33030]
          Length = 408

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 140/409 (34%), Positives = 215/409 (52%), Gaps = 6/409 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGL   +V  +   G  +P PIQ   IP VL   DV G   TG+GKT +F LPML +
Sbjct: 4   FSDLGLPRPIVNVLTKQGIEEPFPIQEAAIPAVLDGRDVLGRGPTGSGKTFAFGLPMLAL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L    ++   PR L+L PTRELAAQ+    +       L V  ++GG+      + L   
Sbjct: 64  LAGSPSKPGHPRGLVLAPTRELAAQIRQRLDDPAAAAGLRVLEVVGGVNINNHIRSLAAP 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR  D  N+GKL  +++ +  IDEAD+M DMGF+P ++ +    P   Q LL
Sbjct: 124 VDLLVATPGRAQDLINQGKLSFDSVAVTAIDEADQMADMGFLPQVRKLVDATPENGQRLL 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +++K+ + +L +P         +  +T++H  +   ++ S+    +  L+ ++
Sbjct: 184 FSATLDGDVEKLVQRYLTDPVTHSTAPAQAAVDTMQHYQLLVGSRESRNE--IVPLIAAR 241

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     I+F   K  V      L + G     +HG+  Q +R + +  F +G++ ++VA+
Sbjct: 242 E--GKTIMFMRTKHGVDRQVKKLRRVGIEAQPLHGDKGQGARTRAIEGFTDGSVPVLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI DV  V + D P   ++Y+HR GRT RAG  G   TLV  E  K +D +  
Sbjct: 300 DIAARGIDISDVSLVVHIDPPAEHKSYLHRAGRTARAGTSGTVVTLVMDEQRKEVDQL-- 357

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           L +  VD     ++ ++  L KI  AQ  H R   P  Q  T    R K
Sbjct: 358 LRKAGVDAQKVRVTPMSDELVKITGAQEPHGRPLPPPGQPQTTKRSRGK 406


>gi|332531386|ref|ZP_08407291.1| DEAD/DEAH box helicase domain-containing protein [Hylemonella
           gracilis ATCC 19624]
 gi|332039170|gb|EGI75591.1| DEAD/DEAH box helicase domain-containing protein [Hylemonella
           gracilis ATCC 19624]
          Length = 468

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 138/362 (38%), Positives = 204/362 (56%), Gaps = 10/362 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY++ T IQ  ++P  LQ  DV   A+TG+GKTA+F L +L  L+  R  V+   +L+L 
Sbjct: 28  GYLEMTAIQAASLPAALQGRDVIAQAKTGSGKTAAFALALLAKLDARRFAVQ---SLVLC 84

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QV     +  +   N+ V  L GG+P   Q   LE GA V++ TPGR++DH  
Sbjct: 85  PTRELADQVTTEIRRLARAEDNIKVVTLAGGVPLRGQAASLEHGAHVVVGTPGRVIDHLE 144

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           RG L ++ +  LV+DEADRMLDMGF+  I  +    P  RQTLLFSAT  + + K++  F
Sbjct: 145 RGNLGLDALATLVLDEADRMLDMGFVDDIVKVARQCPAQRQTLLFSATYPEGIAKLAAQF 204

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           L+ P  ++V     + +  +  +     Q     A L +  +   T+     FCN K   
Sbjct: 205 LREPVTVKVQAQHGSEQIEQRWYEVREEQRLPGVARLLEHFRPVSTLA----FCNTKARC 260

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             L   L+ QG+S  A+HG+++QR R ++L  F   +  ++VA+D+AARGLDI  +  V 
Sbjct: 261 RELAELLQAQGYSALALHGDLEQRERDQVLVRFANSSCSVLVATDVAARGLDIAGLAAVI 320

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           N D     + Y+HRIGRTGRAG+ G A +L + +++  +  I++L  +   W    LS L
Sbjct: 321 NVDTSPDPQAYVHRIGRTGRAGQTGLALSLASLDEMGAVGHIDQLQGRPSVWHA--LSEL 378

Query: 379 NP 380
            P
Sbjct: 379 TP 380


>gi|239611619|gb|EEQ88606.1| ATP-dependent RNA helicase ded1 [Ajellomyces dermatitidis ER-3]
 gi|327348365|gb|EGE77222.1| ATP-dependent RNA helicase DED1 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 692

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 140/365 (38%), Positives = 206/365 (56%), Gaps = 18/365 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +  L   ++  +L A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 201 FTNPPLHEHLLSNILLARYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQ 260

Query: 62  ILEK-----------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
            L +           GR +   P  LIL PTREL +Q+ D   K+     L   ++ GG 
Sbjct: 261 SLHRRGPEAEATRGLGRQQKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVYGGA 320

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L++G +VL+ TPGR++D   RG++ + +I+ LV+DEADRMLDMGF P I+ I
Sbjct: 321 EMGNQLRQLDQGCNVLVATPGRLVDMMERGRISLAHIQYLVLDEADRMLDMGFEPQIRRI 380

Query: 171 T--SLVP--FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
              S +P    RQTL+FSAT   ++QK++E FL++   + V    ST+E I    V   +
Sbjct: 381 VQGSDMPDKHMRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRVVECES 440

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              K  ALL  L    D+    ++F   K+    L   L        AIHG+  QR R +
Sbjct: 441 DKDKDSALLDILC--TDSTGLTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERER 498

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G   ++VA+ +AARGLDIP+V HV N+D+PN  ++Y+HRIGRTGRAG  G + 
Sbjct: 499 ALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGIST 558

Query: 347 TLVAK 351
              ++
Sbjct: 559 AFFSR 563


>gi|295672658|ref|XP_002796875.1| ATP-dependent RNA helicase DED1 [Paracoccidioides brasiliensis
           Pb01]
 gi|226282247|gb|EEH37813.1| ATP-dependent RNA helicase DED1 [Paracoccidioides brasiliensis
           Pb01]
          Length = 683

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 139/365 (38%), Positives = 207/365 (56%), Gaps = 18/365 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +  L   ++  ++ + Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 200 FTNPPLHEHLLSNIILSRYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSK 259

Query: 62  ILEK-----------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
            LEK           GR     P  LIL PTREL +Q+ D   K+     L   ++ GG 
Sbjct: 260 SLEKRGPEGDAPRGLGRQSKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVYGGA 319

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L++G +VL+ TPGR++D   RG++ +++I+ LV+DEADRMLDMGF P I+ I
Sbjct: 320 EMGNQLRQLDQGCNVLVATPGRLVDMMERGRISLSHIQYLVLDEADRMLDMGFEPQIRRI 379

Query: 171 T--SLVP--FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
              S +P    RQTL+FSAT   ++QK++E FL++   + V    ST+E I    +   +
Sbjct: 380 VQGSDMPDKHFRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRVIECDS 439

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              K  ALL  L    D+    ++F   K+    L   L        AIHG+  QR R +
Sbjct: 440 DKDKDSALLDILC--SDSTGLTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERER 497

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G   ++VA+ +AARGLDIP+V HV N+D+PN  ++Y+HRIGRTGRAG  G + 
Sbjct: 498 ALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGLST 557

Query: 347 TLVAK 351
              ++
Sbjct: 558 AFFSR 562


>gi|14861844|ref|NP_149068.1| putative ATP-dependent RNA helicase Pl10 [Mus musculus]
 gi|130256|sp|P16381|DDX3L_MOUSE RecName: Full=Putative ATP-dependent RNA helicase Pl10
 gi|200389|gb|AAA39942.1| PL10 protein [Mus musculus]
 gi|26325502|dbj|BAC26505.1| unnamed protein product [Mus musculus]
 gi|148681106|gb|EDL13053.1| DNA segment, Chr 1, Pasteur Institute 1 [Mus musculus]
 gi|223460348|gb|AAI39288.1| DNA segment, Chr 1, Pasteur Institute 1 [Mus musculus]
 gi|223461116|gb|AAI39287.1| DNA segment, Chr 1, Pasteur Institute 1 [Mus musculus]
          Length = 660

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 140/392 (35%), Positives = 220/392 (56%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 181 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 240

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E G+   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 241 IYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 300

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 301 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 360

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 361 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 419

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + + + K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 420 -WVEEADKRSFLLDLLNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 478

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 479 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 538

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 539 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 570


>gi|238927921|ref|ZP_04659681.1| DEAD/DEAH box helicase domain protein [Selenomonas flueggei ATCC
           43531]
 gi|238884254|gb|EEQ47892.1| DEAD/DEAH box helicase domain protein [Selenomonas flueggei ATCC
           43531]
          Length = 426

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 141/419 (33%), Positives = 220/419 (52%), Gaps = 22/419 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  LG+S  +   +   G  +PTP+Q + IP +    DV   AQTGTGKT +++LP+L  
Sbjct: 4   FDQLGISETLTALLQKQGITQPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLAYLLPLLAR 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I  +G A     + L++ PTRELA Q+        +   +   ++ GG   E Q +KL R
Sbjct: 64  IKPQGAA----AQALVIAPTRELAIQIEHVAASLAEPLGIGTTVIYGGADIERQKEKLRR 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH  RG L +  +  +V+DEAD ML MGFI  ++ +        Q  
Sbjct: 120 SPQLVIGTPGRLLDHVRRGTLALGRVNKVVLDEADEMLKMGFIEDVETLLGAAAQDYQLA 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQQLL 239
           LFSATM + + ++++ F+ NP  I +   + T   IE   +   A  +  + CA +    
Sbjct: 180 LFSATMPERIVRLTKRFMTNPAHIRLAGETVTLAAIEQVVIPVSAGDKLDRLCASI---- 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++     ++FC  K+    L   L ++G+ V A+ G++ Q  R  +L  F+   +Q++
Sbjct: 236 -NEEAPYLAMVFCATKERTRALMMELAQRGYLVDALSGDLTQTQRSFVLRQFRSAKLQIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLDI  V HV+N+D+P    +YIHRIGRTGRAG  GKA TLVA    + +  
Sbjct: 295 CATDIAARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGTQGKAITLVAPHQHEKLRK 354

Query: 360 IEKLIEKKVDWLNGDLSSLN----PPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKK 411
           +E  ++     L  D+        PP  + D  +  H     K   +P+++    R KK
Sbjct: 355 MEAALKA---CLRRDVVKKKKRPAPPAGEGDAQKKAHPPRDAKRRALPKRTKSKPRSKK 410


>gi|73969109|ref|XP_860668.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 11 [Canis
           familiaris]
          Length = 651

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 137/382 (35%), Positives = 214/382 (56%), Gaps = 21/382 (5%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 100 PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 159

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 160 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQ 237
           +SAT   E+++++E+FL++  +I V     +A     + ++ C  +   +  K   L+++
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESE--KDHKLIQLMEE 333

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   
Sbjct: 334 IMAEKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAP 391

Query: 298 LMVASDLAARGL-DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++A+D+A+RGL ++ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K 
Sbjct: 392 ILIATDVASRGLGNVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQ 451

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
              + K++E+    +N  L  L
Sbjct: 452 ARELIKVLEEANQAINPKLMQL 473


>gi|496902|emb|CAA56074.1| translation initiation factor [Homo sapiens]
          Length = 411

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 209/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 40  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 100 LD---IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 157 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPSATQVVL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 217 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 275

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 276 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 331

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+G+ GR G A   V  +DI+ +  
Sbjct: 332 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGQYGRKGVAINFVKNDDIRILRD 391

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 392 IEQYYSTQIDEMPMNVADL 410


>gi|254571715|ref|XP_002492967.1| Nucleolar DEAD-box protein required for ribosome assembly and
           function [Pichia pastoris GS115]
 gi|238032765|emb|CAY70788.1| Nucleolar DEAD-box protein required for ribosome assembly and
           function [Pichia pastoris GS115]
 gi|328353020|emb|CCA39418.1| ATP-dependent RNA helicase DDX27 [Pichia pastoris CBS 7435]
          Length = 761

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 137/382 (35%), Positives = 218/382 (57%), Gaps = 14/382 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  V+  +   GY KP+PIQ  +IP+ L   D+   AQTG+GKTA++++P++  
Sbjct: 249 FQSLSLSRPVLKGLSTLGYTKPSPIQSASIPIGLLGKDIVAGAQTGSGKTAAYMIPIIER 308

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           L    +++   R ++L PTRELA QV D  +K  +  N +   L +GG+    Q ++L +
Sbjct: 309 LLFKPSKISATRVVVLTPTRELAIQVNDVGKKISQFVNGIEFGLAVGGLNLRKQEQELRK 368

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR +DH  N     + ++EILVIDEADRML+ GF   ++ I +L+P  +QT
Sbjct: 369 RPDIVIATPGRFIDHIRNSPSFSVESVEILVIDEADRMLEDGFQEELKEILTLLPGKKQT 428

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM + ++ + +  L  P RI ++ P      +   FV        K ALL  +L 
Sbjct: 429 MLFSATMNNSIKDLIQLSLHKPVRIMIDPPKQAVSGLVQEFVRLRKNLEMKPALLFDILT 488

Query: 241 SQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +  +    ++F  +K +   L   L   G  V  +HG++ Q  R+K +++FK  T+ +
Sbjct: 489 KVNPSQQHRIVVFIARKMDAHKLRIILGLLGLKVSELHGSLTQEQRLKSITDFKNLTVPI 548

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-------- 350
           ++ +DLA+RGLDIP +  V N+D+P   + Y+HR+GRT RAGR G++ T V+        
Sbjct: 549 LICTDLASRGLDIPKIEVVINYDMPKTYDIYLHRVGRTARAGREGRSITFVSESNQDRAI 608

Query: 351 -KEDIKHI-DAIEKLIEKKVDW 370
            +E +K I  A  + + + VDW
Sbjct: 609 VREAMKGIATAKNRALGRNVDW 630


>gi|86144589|ref|ZP_01062921.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           MED222]
 gi|85837488|gb|EAQ55600.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           MED222]
          Length = 443

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 133/388 (34%), Positives = 209/388 (53%), Gaps = 10/388 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + K T IQ K IP+ +   D+   ++TG+GKT +FVLPM+
Sbjct: 1   MHFKDLGLDNRLLKNLKHYDFKKATEIQSKAIPVAIAGKDLLASSKTGSGKTLAFVLPMI 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   + PR +IL PTRELA QV           +    L++GG  F  Q K L
Sbjct: 61  HKALKTKAFSAKDPRGVILAPTRELAKQVYGELRSMLGGLSYEATLILGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            +    ++ TPGR+ DH     L ++ +E L++DEADRMLD+GF P ++ I +     R 
Sbjct: 121 RKYPRFIVATPGRLADHLEHRSLFLDGVETLILDEADRMLDLGFAPELRRIANAAKHRRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+   E+  ++   L +PKRI V   +     I   F         K A+L +
Sbjct: 181 QTLMFSATLDHAEVNDIANEMLDSPKRISVGVSNEQHLDITQKFYLC-DHLDHKEAILDR 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++  +  +  +IF   + +   L   L ++     A+ GN++Q  R  I+S F+    +
Sbjct: 240 VIEEAE-YRQVMIFTATRADTDRLTEKLNEKKLKAVALSGNLNQTQRNAIMSQFERAVYK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RG+DIP+V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D    
Sbjct: 299 ILVTTDVASRGIDIPNVSHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSF 358

Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNP 380
             +E  +++ + +     L G    + P
Sbjct: 359 KRVELYLQQDLTFSVLEGLKGKFKGIKP 386


>gi|326482079|gb|EGE06089.1| ATP-dependent RNA helicase DED1 [Trichophyton equinum CBS 127.97]
          Length = 680

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 136/361 (37%), Positives = 203/361 (56%), Gaps = 23/361 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 203 FTNPPLDDHLISNIKLASYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQ 262

Query: 63  ----------------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                              GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 263 AFQNGPSPAPTQQGGQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVV 322

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 323 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQ 382

Query: 167 IQNITS---LVPFT-RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I     + P   RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 383 IRRIVEGEDMPPVAGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQ--K 440

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             Y + + K ++L  +L +       +IF   K+   +L   L  Q F   AIHG+  QR
Sbjct: 441 VEYVEDNDKRSVLLDILHTHGAGLT-LIFVETKRMADSLSEFLINQHFPATAIHGDRTQR 499

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 500 ERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 559

Query: 343 G 343
           G
Sbjct: 560 G 560


>gi|322514183|ref|ZP_08067247.1| ATP-dependent RNA helicase RhlB [Actinobacillus ureae ATCC 25976]
 gi|322119937|gb|EFX91940.1| ATP-dependent RNA helicase RhlB [Actinobacillus ureae ATCC 25976]
          Length = 407

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 144/401 (35%), Positives = 228/401 (56%), Gaps = 12/401 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   V+ A+   G+   TPIQ KT+P+ L  +D+ G AQTGTGKT +F++     
Sbjct: 10  FIDFPIHENVIAALDSKGFEFCTPIQAKTLPITLAGNDIAGQAQTGTGKTMAFLVATFHH 69

Query: 63  LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L     +   + PR LIL PTRELA Q+A + E   K+ +L +AL  GG  +E Q + +E
Sbjct: 70  LLTNDIQTANKQPRALILAPTRELAVQIASDAELLVKHSDLKLALAYGGDGYEKQLQAIE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV--PFTR 178
           +G D+L+ T GR++D+  +G + ++ ++++V+DEADRM D+GFI  I+ +      P  R
Sbjct: 130 QGVDILVGTTGRVIDYVKQGVINLDKVQVVVLDEADRMFDLGFIKGIRYLMRKCSKPDQR 189

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237
            T+LFSAT++  +++++   + N + IE+     T   I E  F   Y     K ALL  
Sbjct: 190 LTMLFSATLSPRVRELAYEDMNNAQYIEIEPLQRTGHRIKEELF---YPSNEDKMALLLT 246

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +   +  +IF N K     +   L   G     + G+I Q+ R+ +L +F +G + 
Sbjct: 247 LLEEE-WPERCMIFANTKHKCEEIWSYLVADGHRAGLLTGDIAQKKRLALLDSFTKGQLD 305

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP+V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +    ++
Sbjct: 306 ILVATDVAARGLHIPEVTHVFNYDLPDDREDYVHRIGRTGRAGESGHSISFACERYAVNL 365

Query: 358 DAIEKLIEKKVDWLNGDLS---SLNPPLEKIDIAQHNHARK 395
            AIE+ I   +     D S   +L  P       +H HA++
Sbjct: 366 PAIEEYIGHPIPVSQYDASALLALPKPARTARAPRHVHAKR 406


>gi|261194144|ref|XP_002623477.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis
           SLH14081]
 gi|239588491|gb|EEQ71134.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis
           SLH14081]
          Length = 465

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 133/355 (37%), Positives = 201/355 (56%), Gaps = 25/355 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DLG+   +  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 58  FKDLGIIDSLCEACETLGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQA 117

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++EK ++       LIL PTRELA Q++  FE  G   ++  A+++GG+    Q   L +
Sbjct: 118 LMEKPQSLF----GLILAPTRELAYQISGAFEALGSLISVRCAVIVGGMDMVPQAIALGK 173

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+LDH    K   + N++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 174 KPHIVVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRT 233

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L +  R+    P++  +T+    +  YA  S           
Sbjct: 234 YLFSATMSSKVESLQRASLSSGLRLPSFIPTNI-KTLPRLSLNEYAGQS----------- 281

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F         L   L   GF    +HG + Q SR+  LS F+  +  ++V
Sbjct: 282 -------AIVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSSRLGALSKFRSRSRDILV 334

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           A+D+AARGLDIP V  V NFD+P  ++ YIHR+GRT RAG+ G AF +V + D++
Sbjct: 335 ATDVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFNIVTQYDLE 389


>gi|223590235|sp|A5DL80|DBP2_PICGU RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 554

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 130/360 (36%), Positives = 196/360 (54%), Gaps = 11/360 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ KPT IQ +  P+ L   D+ GIA TG+GKT S+ LP +  
Sbjct: 127 FDEAGFPDYVLNEVKQQGFPKPTAIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVH 186

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+G +  +    + GG P   Q 
Sbjct: 187 INAQPLLGPGDG----PIVLVLAPTRELAVQIQQECSKFGASSRIRNTCIYGGAPKGQQI 242

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG ++ I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 243 RDLARGVEICIATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 302

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E+Q ++ ++L +P ++ + +    A       V   +++ K+  L++
Sbjct: 303 DRQTLMWSATWPKEVQTLTRDYLNDPIQVTIGSLELAASHTITQIVEVLSEFEKRDRLVK 362

Query: 237 QL-LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L   + D     +IF + K+    +   L   G+   AIHG+  Q  R  +L  FK G 
Sbjct: 363 HLETATADKEAKVLIFSSTKRACDEITSYLRADGWPALAIHGDKQQNERDWVLREFKTGK 422

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+AARG+D+  + +V N+D+P   E+Y+HRIGRTGRAG  G A +L  + + K
Sbjct: 423 SPIMVATDVAARGIDVKGISYVINYDMPGNIEDYVHRIGRTGRAGTTGTAVSLFTEANSK 482


>gi|300716861|ref|YP_003741664.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
 gi|299062697|emb|CAX59817.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
          Length = 459

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 132/352 (37%), Positives = 206/352 (58%), Gaps = 8/352 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY   TP+Q   +P +L+  DV   A+TG+GKTA+F L +L  ++  +    + ++L+L 
Sbjct: 22  GYHTMTPVQAAALPAILEGKDVRAQAKTGSGKTAAFGLGVLHRIDVTQF---VTQSLVLC 78

Query: 80  PTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N+ +  L GG P  AQ   L     +++ TPGRILDH  
Sbjct: 79  PTRELADQVAKELRRLARFAANIKILTLCGGQPMGAQRDSLVHAPHIVVGTPGRILDHLK 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           R  L ++ I  LV+DEADRML+MGF   I+ I    P +RQTLLFSAT   ++ ++S+N 
Sbjct: 139 RETLKLDQIGTLVLDEADRMLEMGFREDIEEIIKYCPASRQTLLFSATWPQDIARISQNI 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            + P  +E +  S    TI+  F    A+  K  AL+  L  S +   + ++FCN K+  
Sbjct: 199 QREPVAVETDVVSDL-PTIDQRFYEAGAR-EKLTALIGLL--SDEKPSSCVVFCNTKREC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            ++ ++L+    S  A+HG+++QR R ++L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 DDVAYALDSAKISALALHGDLEQRDRDQVLIQFANGSCRVLVATDVAARGLDIKSLAMVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           N+ +    E ++HRIGRT RAG  G A + VA +++    A+E  ++ K+ W
Sbjct: 315 NYQLSFDPEVHVHRIGRTARAGAEGCAISFVAPDEMVRAHALEDFLQMKLSW 366


>gi|239623931|ref|ZP_04666962.1| ATP-dependent RNA helicase dbpA [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521962|gb|EEQ61828.1| ATP-dependent RNA helicase dbpA [Clostridiales bacterium 1_7_47FAA]
          Length = 481

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 206/368 (55%), Gaps = 14/368 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    LS  ++ A+   GY  PTPIQ   IP  L   D+   +QTGTGKT +F +P   
Sbjct: 4   NFEAYNLSQPILDALTLLGYTTPTPIQEAVIPKALNGQDIAARSQTGTGKTLAFAVP--- 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I E+      +P+ L+LEPTRELA QV+      G+   L V  + GG P + Q + L +
Sbjct: 61  ICEQAVWEENLPQALVLEPTRELAVQVSREIFLVGRKKRLKVPAVFGGFPIDKQIQTLRQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + ++  TPGR++DH  RG L ++ +  LVIDEAD MLDMGF+  ++ I SL+P  R T 
Sbjct: 121 KSHIVTGTPGRVMDHLRRGSLCLSKVRFLVIDEADLMLDMGFLDEVRQILSLLPKDRSTF 180

Query: 182 LFSATMTDELQKVSENFLQNPKRI----EVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           LFSAT+  +++++    +     I    EV  P +T +++         Q +K  A    
Sbjct: 181 LFSATLDRQVRELMGEAVSEAVFISMEDEVKVPPATQQSVYQVL-----QENKYNAFKNI 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+  ++   + +IFC  ++ V  L   L +       IHG ++Q  R+K +  F+ G  +
Sbjct: 236 LI--KENPDSCMIFCGTREMVNVLFQKLRRDRIFCGMIHGEMEQAERLKHVDAFRRGGFR 293

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++A+D+AARG+D   +  V N+D P   E Y+HRIGRTGR G+ G+A +LV +++++ +
Sbjct: 294 YLIATDVAARGVDFEGISLVVNYDFPTGRETYVHRIGRTGRNGQSGRAVSLVTEDELRML 353

Query: 358 DAIEKLIE 365
             +E+ +E
Sbjct: 354 KKVEEYME 361


>gi|331217149|ref|XP_003321253.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309300243|gb|EFP76834.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 574

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 130/388 (33%), Positives = 207/388 (53%), Gaps = 38/388 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++ G    ++  + +AG+  P+PIQ +  P+ L   DV  ++ TG+GKT +F +P + 
Sbjct: 112 NFSEAGFPDYIMSEIRNAGFNAPSPIQCQAWPMALSGRDVVAVSATGSGKTIAFSIPAMI 171

Query: 62  ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                 +L  G      P  LIL PTRELA Q+     K+G +  +    + GG+P   Q
Sbjct: 172 HINAQPLLAPGDG----PIVLILAPTRELAVQIQGECTKFGASSRIRNTCVYGGVPKGQQ 227

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L RGA+++I TPGR++D     K  ++ +  LV+DEADRMLDMGF P I+ I   + 
Sbjct: 228 IRDLTRGAEIVIATPGRLIDMLESRKTNLHRVTYLVMDEADRMLDMGFEPQIKKIVEQIR 287

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTL+FSAT   E+Q+++  +L++  ++ V +   TA       V   + + K+  L+
Sbjct: 288 PDRQTLMFSATWPKEVQRLASEYLKDFIQVNVGSLDLTANINITQIVEVCSDFEKRGKLI 347

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + L +        +IF   K+   +L   L + G+   AIHG+  Q+ R  +L  FK G 
Sbjct: 348 KHLEKISSESAKVLIFVGTKRVADDLTKYLRQDGWPSLAIHGDKQQQERDWVLEEFKSGR 407

Query: 296 IQLMVASDLAARGLDIP----------------------------DVGHVFNFDVPNRAE 327
             +M+A+D+A+RGL +P                            D+ +V N+D+PN  E
Sbjct: 408 SPIMIATDVASRGLAVPHIHLDYRARMSWAGLLLDLFFDPLGDVKDIAYVINYDMPNGIE 467

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +YIHRIGRTGRAGR G A++ ++ +  K
Sbjct: 468 DYIHRIGRTGRAGRTGTAYSYISADQSK 495


>gi|242280865|ref|YP_002992994.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
 gi|242123759|gb|ACS81455.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
          Length = 517

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 127/343 (37%), Positives = 202/343 (58%), Gaps = 7/343 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P ++ A+   G+ K TP+Q K++P  L   D+   A+TG+GKT +FVLP+L   EK  
Sbjct: 40  LPPSILNALDKTGWDKLTPVQSKSLPYQLYNRDLMVQAKTGSGKTGAFVLPLL---EKLD 96

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
             +   + LIL PTRELA QV    EK  +   L V  + GG+ +  Q ++LE+GA +++
Sbjct: 97  PNINYTQALILVPTRELARQVEREAEKIFEGSGLRVLSVYGGVGYGHQREELEKGAHMVV 156

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR-QTLLFSAT 186
            TPGRILDH  +    + ++E L+ DEADRML +GF P ++ + S +P     T +FSAT
Sbjct: 157 GTPGRILDHLLKRTFDLEDLETLIFDEADRMLSIGFYPDMREVKSYLPRRPISTYMFSAT 216

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + + ++S+ F+  P+ + +++       I+H +        K+  L++ L     T  
Sbjct: 217 FPEHVIRLSKEFMYKPQMLSLSSKQVHVTEIDHAYYEV-PSMGKERQLMRILEMENPT-- 273

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + IIFCN K NV  +   L   GF+   +  ++ Q  R ++L+  ++G+++ +VA+D+AA
Sbjct: 274 SAIIFCNTKANVEFVTAVLNNFGFNAADLTSDLSQSKRERVLAQLRDGSVRFLVATDIAA 333

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           RG+D+PD+ HV  ++ P   E+YIHR GRTGRAG  G A +LV
Sbjct: 334 RGIDVPDLSHVIMYEPPEDKESYIHRAGRTGRAGSSGVAISLV 376


>gi|116872678|ref|YP_849459.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741556|emb|CAK20680.1| ATP-dependent RNA helicase DbpA family [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 470

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 137/367 (37%), Positives = 205/367 (55%), Gaps = 17/367 (4%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +L LS ++  A+ + GY + TP+Q   IP+ L   D+   +QTG+GKTA+F +P   I E
Sbjct: 3   NLNLSDEIKKAITELGYNEATPVQKAVIPIALTGEDIVAKSQTGSGKTAAFAIP---IAE 59

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           +       P+ LI+ PTRELA QV       G+   +  A + G  PF  Q  +L +   
Sbjct: 60  QVVWEENKPQALIIVPTRELAMQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKNH 119

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGR+LDH  +G L ++ +  LV+DE D ML MGFI  +++I S +P  RQ L FS
Sbjct: 120 IVVGTPGRLLDHIEKGTLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKKRQNLFFS 179

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           ATM +E+Q + + +  NP  IE+   S     I H  +    Q   K   L+ +L +++ 
Sbjct: 180 ATMPEEMQDLIKRYQDNPMVIEM--ASEKTNPIFHVEM----QTDTKEKTLKDVLITENP 233

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             + IIFCN K  V  L   L+        IHG + Q  R + +  FK G  + ++A+D+
Sbjct: 234 -DSAIIFCNTKNQVDELSEMLD---LRTSKIHGGLRQEDRFQAMDEFKSGKSRFLIATDV 289

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL- 363
           A RG+D+ +V  V N+D+P   ENY+HRIGRTGRAG  GKA + V  ++   +  IE++ 
Sbjct: 290 AGRGIDVENVSLVINYDLPIEKENYVHRIGRTGRAGNSGKAISFVKTQENPLLRDIEEML 349

Query: 364 ---IEKK 367
              IEKK
Sbjct: 350 NISIEKK 356


>gi|312884016|ref|ZP_07743733.1| ATP-dependent RNA helicase SrmB [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368474|gb|EFP96009.1| ATP-dependent RNA helicase SrmB [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 407

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 209/369 (56%), Gaps = 5/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA+L L P ++ A+ + GY +PT IQ + IP  L   DV   A TGTGKTA+FVLP L 
Sbjct: 4   NFAELDLDPDLLLAIDEMGYQRPTQIQAEAIPQALDGRDVLASAPTGTGKTAAFVLPALQ 63

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    +   P R LIL PTRELA QVA+      K+  L +  + GG+ ++     L 
Sbjct: 64  FLQDFPRKQPGPARILILTPTRELAMQVAEQARALAKHTRLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR++++    +     IE L++DEADRMLDMGF P +  ++S   + +QT
Sbjct: 124 TTQDIVVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSSECRWRKQT 183

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+    ++  + + L+ P  I+        + I   +       + K  LL+ +L
Sbjct: 184 LLFSATLEGRGVEGFTADLLKEPAMIDAEPSRRERKKIAQWY-HRADDMAHKLELLKSIL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q   +  I+F   ++ +  L   LEK       I G + Q  R   +S F +GT+ ++
Sbjct: 243 NNQ--AERSIVFLKTRERLSALRSELEKAEIPCAWIQGEMPQDRRNNAISRFSDGTVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+P+V HV N+D+P  A+ Y+HRIGRT RAG+ G A +LV   D   I+ 
Sbjct: 301 LATDVAARGIDLPNVTHVINYDMPRSADVYLHRIGRTARAGKKGNAISLVEAHDQPMIER 360

Query: 360 IEKLIEKKV 368
           + + + +++
Sbjct: 361 VARYVSEEI 369


>gi|327282752|ref|XP_003226106.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Anolis
           carolinensis]
          Length = 697

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 134/351 (38%), Positives = 206/351 (58%), Gaps = 7/351 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG---RARVRMPRTL 76
           G++KPTPIQ +  P++LQ +D+ GIAQTGTGKT ++++P    L+     R +   P  L
Sbjct: 310 GFLKPTPIQAQAWPIILQGYDLIGIAQTGTGKTLAYLMPGFIHLDLQPIPREKRGGPGML 369

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           +L PTRELA QV     KY     +    + GG     Q   + +G D++I TPGR+ D 
Sbjct: 370 VLIPTRELALQVEAECSKYSYK-GIKSICIYGGGDRRGQINVVSKGVDIVIATPGRLNDL 428

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
                + + +I  LV+DEADRMLDMGF P I  I   +   RQT++ SAT  D ++++++
Sbjct: 429 QMNNFINLRSITYLVLDEADRMLDMGFEPQIMKILLDIRPDRQTVMTSATWPDGVRRLAK 488

Query: 197 NFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
           ++L++P  + V T    A  T+E   V    +  +K A  +  + S  +    IIF  +K
Sbjct: 489 SYLKDPMIVYVGTLDLAAVNTVEQRVVVIPEE--EKRAFTRFFIDSMKSEDKVIIFVGKK 546

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
               +L      QG  V ++H N +Q  R + L +F++G ++++VA+DLA+RGLD+ D+ 
Sbjct: 547 LTADDLSSDFSLQGIPVQSLHSNREQCDREQALEDFRQGRVRVLVATDLASRGLDVQDIT 606

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           HVFNFD P   E Y+HR+GRTGRAGR G+A TLV + D +    + +++E+
Sbjct: 607 HVFNFDFPRNIEEYVHRVGRTGRAGRTGEAVTLVTRNDWRVASELIEILER 657


>gi|308322209|gb|ADO28242.1| eukaryotic initiation factor 4a-iii [Ictalurus furcatus]
          Length = 406

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 209/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 35  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQC 94

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 95  LD---IQVRETQALILAPTRELAGQIQKVLLALGDFMNVQCHACIGGTNVGEDIRKLDYG 151

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 152 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 211

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 212 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 270

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 271 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 326

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 327 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 386

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 387 IEQYYSTQIDEMPMNVADL 405


>gi|300932825|ref|ZP_07148081.1| putative ATP-dependent RNA helicase [Corynebacterium resistens DSM
           45100]
          Length = 420

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 138/384 (35%), Positives = 215/384 (55%), Gaps = 15/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  LG++ ++   +          IQ   +PL L   D+ G A+TG GKT  F +P+L  
Sbjct: 9   FLSLGVAAEICDGLATRDITHAFAIQELCLPLALAGKDLIGQARTGMGKTYGFGIPLLDR 68

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
           + +          PR L++ PTREL  QVAD+     +    + V  L GG+ FE Q ++
Sbjct: 69  VFDDAHVTPPDGSPRALVIVPTRELCIQVADDLTIAAQFLPEINVLALYGGVKFETQIQQ 128

Query: 119 LERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L++G +DVL+ TPGR+LD   RG+L++ N+EI+V+DEAD MLD GF+  +Q + +     
Sbjct: 129 LQQGHSDVLVGTPGRLLDLHRRGELVLENVEIVVLDEADEMLDQGFLDDVQALIAETSEN 188

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ +LFSATM   +  +S  F+++P +I  +   S         +A  +    + + L +
Sbjct: 189 RQMMLFSATMPGPIMALSRTFMRHPVQIRADQAQSQQTHATTTQLAFQSHKLDRMSALAR 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +LQ+    +  ++F   KK    +   L + GF+  A+HG++ Q  R + L  F+EGT+ 
Sbjct: 249 ILQTPGRGRT-MVFTRTKKQAAFVASDLGELGFAAGAVHGDMRQHERQQCLEAFREGTVD 307

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ DV HV N+  P+    Y+HRIGRTGRAG  G A TLV  +++   
Sbjct: 308 VLVATDVAARGIDVEDVTHVINYQCPDDDRAYVHRIGRTGRAGHTGMAVTLVGWDEVDRF 367

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPP 381
           +A+        + LN DLS  NPP
Sbjct: 368 NAL-------CETLNLDLS--NPP 382


>gi|327304303|ref|XP_003236843.1| ATP-dependent RNA helicase DED1 [Trichophyton rubrum CBS 118892]
 gi|326459841|gb|EGD85294.1| ATP-dependent RNA helicase DED1 [Trichophyton rubrum CBS 118892]
          Length = 678

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 136/361 (37%), Positives = 203/361 (56%), Gaps = 23/361 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 201 FTNPPLDDHLISNIKLASYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQ 260

Query: 63  ----------------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                              GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 261 AFQNGPSPAPTQQGGQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVV 320

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 321 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQ 380

Query: 167 IQNITS---LVPFT-RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I     + P   RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 381 IRRIVEGEDMPPVAGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQ--K 438

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             Y + + K ++L  +L +       +IF   K+   +L   L  Q F   AIHG+  QR
Sbjct: 439 VEYVEDNDKRSVLLDILHTHGAGLT-LIFVETKRMADSLSEFLINQHFPATAIHGDRTQR 497

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 498 ERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 557

Query: 343 G 343
           G
Sbjct: 558 G 558


>gi|240281206|gb|EER44709.1| ATP-dependent RNA helicase DED1 [Ajellomyces capsulatus H143]
 gi|325092298|gb|EGC45608.1| ATP-dependent RNA helicase DED1 [Ajellomyces capsulatus H88]
          Length = 694

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 138/365 (37%), Positives = 204/365 (55%), Gaps = 18/365 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +  L   ++  ++ A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 205 FTNPPLHEHLLSNIVLARYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQ 264

Query: 62  -----------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                          GR +   P  LIL PTREL +Q+ D   K+     L   ++ GG 
Sbjct: 265 SLHTRGPEAEAARGLGRQQKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVYGGA 324

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L++G +VL+ TPGR++D   RG++ + +I+ LV+DEADRMLDMGF P I+ I
Sbjct: 325 EMGNQLRQLDQGCNVLVATPGRLVDMMERGRISLAHIQYLVLDEADRMLDMGFEPQIRRI 384

Query: 171 T--SLVP--FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
              S +P    RQTL+FSAT   ++QK++E FL++   + V    ST+E I    V   +
Sbjct: 385 VQGSDMPDKHMRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRIVECES 444

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              K  ALL  L    D+    ++F   K+    L   L        AIHG+  QR R +
Sbjct: 445 DKDKDSALLDILC--SDSTGLTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERER 502

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G   ++VA+ +AARGLDIP+V HV N+D+PN  ++Y+HRIGRTGRAG  G + 
Sbjct: 503 ALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGIST 562

Query: 347 TLVAK 351
              ++
Sbjct: 563 AFFSR 567


>gi|219113631|ref|XP_002186399.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583249|gb|ACI65869.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 414

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 210/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L  +++  +   G+ KP+ IQ + I   +   D+   AQ+GTGKTA+F +  L  
Sbjct: 43  FDAMELPEELLRGIFSYGFEKPSAIQQRAIKPTILAKDLIAQAQSGTGKTATFAIGTLAR 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    ++R  + LIL PTRELA Q+       G   ++ V   +GG       + L+ G
Sbjct: 103 LD---PKLRECQALILAPTRELAQQIQKVVLALGDYMDIQVHACVGGTAVRDDIRTLQAG 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D  NR  L +++I    +DEAD ML  GF   I +I   +P T Q  L
Sbjct: 160 VHVVVGTPGRVFDMINRRALRLDSIRQFFLDEADEMLSRGFKDQIYDIFKFLPETVQVCL 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  ++ +V+E F++ P RI V     T E I+  +++   +  K    C L + L 
Sbjct: 220 FSATMPLDVLEVTERFMREPVRILVKKDELTLEGIKQFYISVDKEDWKLETLCDLYETL- 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   II+CN ++ V  L   ++K+ F+V  +HG++DQR R  I+  F+ G+ +++
Sbjct: 279 ----TITQAIIYCNTRRKVDWLQEEMQKRDFTVSCMHGDMDQRERDIIMREFRSGSSRVL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V NFD+P   ENYIHRIGR+GR GR G A   + + D++++  
Sbjct: 335 ITTDLLARGIDVQQVSLVINFDLPTNRENYIHRIGRSGRFGRKGVAINFLTEADVRYLRD 394

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++  +  D++ L
Sbjct: 395 IEQFYTTEITEMPSDVADL 413


>gi|195376889|ref|XP_002047225.1| GJ13322 [Drosophila virilis]
 gi|194154383|gb|EDW69567.1| GJ13322 [Drosophila virilis]
          Length = 797

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 132/357 (36%), Positives = 211/357 (59%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G   +++ +V  A Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ P+LT 
Sbjct: 281 FGHFGFDEQLLKSVRKAEYTQPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFIWPLLTH 340

Query: 63  LEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   R  +R    P  LIL PTREL+ Q+ +  +K+GK YN+ V    GG     Q+K L
Sbjct: 341 LMDQR-ELRPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSKAL 399

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G ++++ TPGR++D        +  +  LV+DEADRM  MGF P +++I + V   RQ
Sbjct: 400 EQGCEIVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQ 459

Query: 180 TLLFSATMTDELQKVSENFLQNPKRI-EVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           TLLFSAT    +++++ + L +P RI + +   +  +  +H +V       K   LL  L
Sbjct: 460 TLLFSATFKKRIERLARDILTDPVRIVQGDLNEANQDITQHVYVFPNP-LQKWNWLLCHL 518

Query: 239 LQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++  S+  +   ++F  +K +   + ++L  +  +   +HG++DQ  R K+++ FK    
Sbjct: 519 VKFLSEGAV---LVFVTKKADAETVANNLIVKEHNCLLLHGDMDQADRNKVITQFKRKEC 575

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDIP + +V N+D+    + + HRIGRTGRAG  G A+TLV  +D
Sbjct: 576 DILVATDVAARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAYTLVTDKD 632


>gi|261491682|ref|ZP_05988263.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261494445|ref|ZP_05990931.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309829|gb|EEY11046.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261312635|gb|EEY13757.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 411

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 140/381 (36%), Positives = 219/381 (57%), Gaps = 9/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   V+ A+   G+   TPIQ KT P+ L  +D+ G AQTGTGKT +F++     
Sbjct: 10  FIDFPIHTNVLNALNSKGFEFCTPIQAKTFPITLNGNDIAGQAQTGTGKTLAFLIATFNH 69

Query: 63  LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L           PR LIL PTRELA Q+  + + +  + +L +AL  GG  ++ Q + +E
Sbjct: 70  LLNNEIETAKNQPRALILAPTRELAVQIGADAQLFLPHCDLKLALAYGGDGYDKQIQAIE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT--SLVPFTR 178
           +G D+L+ T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +   + VP  R
Sbjct: 130 KGVDILVGTTGRVIDYVKQGIIHLDKIQVIVLDEADRMFDLGFIKDIRYLMRKAPVPTER 189

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237
            TLLFSAT++ ++++++   + N + IE+     T   I E  F   Y     K ALL  
Sbjct: 190 LTLLFSATLSAKVRELAYEDMDNAEYIEIEPLQRTGHRIKEELF---YPSNEDKMALLLT 246

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +      +IF N K     +   L   G  +  + G+I Q+ R+ +L NF +G + 
Sbjct: 247 LLEEE-WPDRCMIFANTKHKCEEIWQYLAADGHRIGMLTGDIPQKKRLSLLDNFTKGNLD 305

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+AARGL IPDV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +    ++
Sbjct: 306 ILVVTDVAARGLHIPDVTHVFNYDLPDDKEDYVHRIGRTGRAGESGHSISFACERYAVNL 365

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
            AIE+ I  ++     D  SL
Sbjct: 366 PAIEEYIGHQIPVSQYDKESL 386


>gi|121706879|ref|XP_001271659.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus clavatus
           NRRL 1]
 gi|134034088|sp|A1CH78|DED1_ASPCL RecName: Full=ATP-dependent RNA helicase ded1
 gi|119399807|gb|EAW10233.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus clavatus
           NRRL 1]
          Length = 681

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 202/363 (55%), Gaps = 22/363 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 191 FTNPPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 250

Query: 63  ----------------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                           +  GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 251 AFQKGPSAVPAQASGQMSYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVV 310

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI  LV+DEADRMLDMGF P 
Sbjct: 311 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNINYLVLDEADRMLDMGFEPQ 370

Query: 167 IQNITSL--VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I     +P    RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 371 IRRIVEGEDMPSVNERQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQK-- 428

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             Y +   K ++L  +L +  T    +IF   K+    L   L  Q F   AIHG+  QR
Sbjct: 429 VEYVEDVDKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLINQRFPATAIHGDRTQR 488

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+     ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 489 ERERALEMFRSARCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 548

Query: 343 GKA 345
           G A
Sbjct: 549 GIA 551


>gi|46200197|ref|YP_005864.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB27]
 gi|46197825|gb|AAS82237.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB27]
          Length = 517

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 145/395 (36%), Positives = 223/395 (56%), Gaps = 19/395 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F D  L P+++ A+   G   PTPIQ   +PL L+  D+ G A+TGTGKT +F LP+ 
Sbjct: 8   MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 67

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   + R R PR L+L PTRELA QVA          +L V  + GG  +  Q + L 
Sbjct: 68  ERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALL 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGAD ++ TPGR LD+  +G L ++ +E+ V+DEAD ML MGF   ++ + S  P +RQT
Sbjct: 126 RGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQT 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT+    ++++E +++NP  I V  + P +  E       A  A    +  +L  L
Sbjct: 186 LLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEEE------AVPAPVRGRLEVLSDL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L    +    ++F   K     +   L + G    A+HG++ Q  R ++L  F++G +++
Sbjct: 240 LYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIP V  V ++ +P+RAE Y HR GRTGRAGR G+   L    + + ++
Sbjct: 299 LVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVE 358

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPL-EKIDIAQHNH 392
           A+E+ + ++          +NPP  E++  A+  H
Sbjct: 359 ALERAVGRR-------FKRVNPPTPEEVLEAKWRH 386


>gi|15598662|ref|NP_252156.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|254236418|ref|ZP_04929741.1| hypothetical protein PACG_02400 [Pseudomonas aeruginosa C3719]
 gi|9949609|gb|AAG06854.1|AE004767_5 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|126168349|gb|EAZ53860.1| hypothetical protein PACG_02400 [Pseudomonas aeruginosa C3719]
          Length = 446

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 138/371 (37%), Positives = 209/371 (56%), Gaps = 3/371 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ A+    + +PTP+Q   IP  L+ HD+   AQTG+GKTA+F+LP+L  
Sbjct: 7   FSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFLLPLLHR 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L        + R LIL PTRELA Q     E++ +   +   L+ GG  F+ Q  +L + 
Sbjct: 67  LLAEDKPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRKN 126

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +++I TPGR+L+  N G L + +IE+LV+DEADRMLDMGF   +  + +  P  RQTLL
Sbjct: 127 PEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAERQTLL 186

Query: 183 FSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT +   L KV    L+ P+ + +N      E +    V T    + K  LLQ LL S
Sbjct: 187 FSATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQ-VITADDVAHKEQLLQWLL-S 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +T    I+F N + +   L   L      V  +HG  DQ+ R   +   K+G ++++VA
Sbjct: 245 NETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKILVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + ++E
Sbjct: 305 TDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDWNLMSSVE 364

Query: 362 KLIEKKVDWLN 372
           + +++  +  N
Sbjct: 365 RYLKQNFERRN 375


>gi|297847510|ref|XP_002891636.1| hypothetical protein ARALYDRAFT_474250 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337478|gb|EFH67895.1| hypothetical protein ARALYDRAFT_474250 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 392

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 133/376 (35%), Positives = 204/376 (54%), Gaps = 11/376 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+G++ KV+  V D GY KP+ IQ + +  +L+  DV   AQ+GTGKT+   + +  I
Sbjct: 24  FDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQI 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +     +V+    L+L P+RELA+Q     +  G + N+     IGG       KKLERG
Sbjct: 84  VNTSSRKVQ---ALVLSPSRELASQTEKTIQVIGAHTNIQAHACIGGKSIGEDIKKLERG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
              +  TPGR+ D   RG L    +++LV+DE+D ML  G    I ++   +P   Q  L
Sbjct: 141 VHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT---YAQYSKKCALLQQLL 239
            SAT+  E+ +++E F+ +P RI V     T E I+  +V       ++   C L  +L+
Sbjct: 201 ISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGRLI 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      IIFCN ++ V  L   +    F V ++HG+  Q+ R +I++ F+    +++
Sbjct: 261 INQ-----AIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDEIMNQFRSFKSRVL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +ASD+ ARG+D+  V HV N+D+PN  E YIHRIGR GR GR G A   V   D+K +  
Sbjct: 316 IASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKD 375

Query: 360 IEKLIEKKVDWLNGDL 375
           IE+    K+  +  DL
Sbjct: 376 IERHYGTKIREMPADL 391


>gi|225457931|ref|XP_002273443.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 732

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 135/363 (37%), Positives = 201/363 (55%), Gaps = 5/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  ++ A    GY KPTPIQ   IP+ L   D+CG A TG+GKTA+F LP L  
Sbjct: 127 FLELNLSRPLLRACEALGYTKPTPIQAACIPIALTGRDICGSAITGSGKTAAFSLPTLER 186

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     RV+  R L+L PTRELA QV    EK  +  ++   L++GG+  + Q   L   
Sbjct: 187 LLFRPKRVQAIRVLVLTPTRELAVQVHSMMEKLAQFTDIRCCLIVGGLSSKMQETALRSM 246

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV++ TPGR++DH  N   + + ++ +L++DEADR+L++GF   I+ +  L P  RQT+
Sbjct: 247 PDVVVATPGRMIDHLRNSMSVDLEDLAVLILDEADRLLELGFNAEIRELVRLCPKRRQTM 306

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLL 239
           LFSATMT+E+ ++ +  +  P R+  +  +    T+  E   +    + +++  LL   L
Sbjct: 307 LFSATMTEEVDELVKLSMTKPMRLAADPSTKRPATLTEEVVRIRRMREVNQEAVLL--AL 364

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+      IIF   K+    L       GF    +HGN+ Q  R+  L  F++  +  +
Sbjct: 365 CSKTFTAKAIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRLDALELFRKQQVDFL 424

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  V  V N+  P    +Y+HR+GRT RAGR G A T V   D   + +
Sbjct: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKS 484

Query: 360 IEK 362
           I K
Sbjct: 485 IVK 487


>gi|550329|emb|CAA57417.1| putative RNA helicase [Dictyostelium discoideum]
          Length = 582

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 142/393 (36%), Positives = 215/393 (54%), Gaps = 19/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A  GL+ KV   +    Y KPT IQ +TIP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 24  WAQAGLTEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMF-- 81

Query: 63  LEKGRARVRMPRT--------LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
               R  +  P++        LI+ PTRELA Q+    +K+ K   L  A + GG     
Sbjct: 82  ----RHILAQPKSAPGEGMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISE 137

Query: 115 QNKKLERGADVLICTPGRILDHF---NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           Q  +L+RGAD+++CTPGR++D     NR    +  +  LV+DEADRM DMGF P I  I 
Sbjct: 138 QIAELKRGADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIV 197

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
             +   RQT++FSAT   +++ V++  L  P  I     S  +  IE  FV      ++ 
Sbjct: 198 DSIRPDRQTIMFSATFPPKVENVAKKILNKPLEIIAGGRSIVSSDIEQ-FVEVRPTETRF 256

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L++ LL         +IF N+++   NL   L    +   ++HG+ DQ  R + +S+F
Sbjct: 257 RRLIE-LLSIWYHKGQILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDF 315

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K     +++A+ LA+RGLDI D+  V NFD P+  E+Y+HR+GRTGRAG  G A+T +  
Sbjct: 316 KNKVKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITP 375

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
           ++ +   +I K +E+    +  +L  LN   EK
Sbjct: 376 DEERFSSSIIKALEQSGSKVPDELRKLNDTYEK 408


>gi|107102999|ref|ZP_01366917.1| hypothetical protein PaerPA_01004068 [Pseudomonas aeruginosa PACS2]
 gi|296388016|ref|ZP_06877491.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 441

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 137/371 (36%), Positives = 209/371 (56%), Gaps = 3/371 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ A+    + +PTP+Q   IP  L+ HD+   AQTG+GKTA+F+LP+L  
Sbjct: 2   FSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFLLPLLHR 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L        + R LIL PTRELA Q     E++ +   +   L+ GG  F+ Q  +L + 
Sbjct: 62  LLAEDKPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRKN 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +++I TPGR+L+  N G L + +IE+LV+DEADRMLDMGF   +  + +  P  RQTLL
Sbjct: 122 PEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAERQTLL 181

Query: 183 FSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT +   L KV    L+ P+ + +N      E +    + T    + K  LLQ LL S
Sbjct: 182 FSATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVI-TADDVAHKEQLLQWLL-S 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +T    I+F N + +   L   L      V  +HG  DQ+ R   +   K+G ++++VA
Sbjct: 240 NETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + ++E
Sbjct: 300 TDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDWNLMSSVE 359

Query: 362 KLIEKKVDWLN 372
           + +++  +  N
Sbjct: 360 RYLKQNFERRN 370


>gi|145596599|ref|YP_001160896.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           tropica CNB-440]
 gi|145305936|gb|ABP56518.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440]
          Length = 461

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 128/352 (36%), Positives = 193/352 (54%), Gaps = 10/352 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DFA LGL   +V  +   G   P  IQ  T+P  L   DV G  QTG+GKT +F LP+L
Sbjct: 9   VDFAALGLPQPLVRELARQGITTPFEIQRATMPDALAGRDVLGRGQTGSGKTLAFGLPLL 68

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G RAR R PR L+L PTRELA QV+D     G+   + +   +GG+P++ Q   L
Sbjct: 69  ARLANGERARPRHPRALVLVPTRELAMQVSDALFPLGRTIGVFLRTAVGGVPYDRQISSL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +VL+ TPGR+ D   RG   +++IE+ V+DEAD+M DMGF+P +  + +  P   Q
Sbjct: 129 RRGVEVLVATPGRLADLIERGVCRLDDIEVTVLDEADQMADMGFLPEVTELLAKTPADAQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQ 237
            LLFSAT+  ++  +   F+ +P       P++  ET++H    +  + ++S   ++  +
Sbjct: 189 RLLFSATLDKDVDALVRRFMTDPVTHSTAPPTAAVETMDHHLLLIPPHDKFSVVASIAAR 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             ++       ++F   +  V  L   L   G     +HG   QR R + L+ F+EG   
Sbjct: 249 EGRT-------MVFARTQLGVDRLVGQLAAVGVRAGGLHGGKTQRMRTRTLAEFREGRTN 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++VA+D+AARG+ +  V  V + D P   ++Y+HR GRT RAG  G   TL 
Sbjct: 302 VLVATDVAARGIHVDGVSLVLHVDPPKDPKDYLHRAGRTARAGETGAVATLA 353


>gi|215741236|dbj|BAG97731.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 478

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 140/356 (39%), Positives = 198/356 (55%), Gaps = 31/356 (8%)

Query: 45  AQTGTGKTASFVLPMLTILEKG--------------RARVRMPRTLILEPTRELAAQVAD 90
           AQTG+GKTA+F LP+++ L                 RA  + PR L+L PTRELAAQ+ +
Sbjct: 4   AQTGSGKTAAFCLPVVSGLVAAGGSGIGHRERSSFNRAAAK-PRALVLAPTRELAAQINE 62

Query: 91  NFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEIL 150
             +K+     L V +  GG P   Q + LERGAD+L+ TPGR++D   R K+ +  I+ L
Sbjct: 63  EAKKFSFQTGLRVVVAYGGTPMYNQLRDLERGADILVATPGRLVDMVERSKVSLEAIKYL 122

Query: 151 VIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIE 206
           V+DEADRMLDMGF P I+ I   +       RQT+LFSAT   E+Q+++ +FL N   I 
Sbjct: 123 VMDEADRMLDMGFEPQIRKIVERMNMPRKSVRQTMLFSATFPPEIQRLASDFLSNYIFIT 182

Query: 207 VNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG-------IIFCNQKKNVV 259
           V    S+ + I    V   +   K+  LL  L +    + N        ++F   K+   
Sbjct: 183 VGRVGSSTDLIMQK-VELLSDGEKRGYLLDLLQRQSVGVANSKLQQPLTLVFVETKREAD 241

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
           +L + L  +GF   AIHG+  Q+ R   L +FK G   +MVA+D+A+RGLD+P+V HV N
Sbjct: 242 SLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRGLDVPNVAHVIN 301

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA-IEKLIEKKV---DWL 371
           +D+P   E+Y+HRIGRTGRAG+ G A     + D       +E + E K    DWL
Sbjct: 302 YDLPKSIEDYVHRIGRTGRAGKAGSATAFFTESDHSLAKGLLELMTEAKQDVPDWL 357


>gi|183598940|ref|ZP_02960433.1| hypothetical protein PROSTU_02380 [Providencia stuartii ATCC 25827]
 gi|188021152|gb|EDU59192.1| hypothetical protein PROSTU_02380 [Providencia stuartii ATCC 25827]
          Length = 457

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 143/385 (37%), Positives = 221/385 (57%), Gaps = 13/385 (3%)

Query: 3   FADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA+L   P+   A L + GYV  TPIQ   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FAELNTLPEEQLANLTELGYVTMTPIQEAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++   A+    ++L+L PTRELA QVA    +  +   N+ +  L GG+PF  Q   L 
Sbjct: 64  HID---AKQFSTQSLVLCPTRELADQVASELRRLARYMANIKILTLCGGVPFSVQRDSLI 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             A +++ TPGR+LDH N+  + ++ ++ LV+DEADRMLDMGF   I  + S  P +RQT
Sbjct: 121 HAAHIIVATPGRLLDHLNKETVKLDTLQTLVLDEADRMLDMGFADDIDEVISYAPISRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
           LLFSAT  + +  +S+   +N   IE+N+       IE  F  VA + +      LL Q 
Sbjct: 181 LLFSATWPETITAMSQRIQRNAITIEINSVDELP-AIEQRFYEVARHEKIDLLQKLLSQQ 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +     + ++FCN KK+   +  +L +   SV  +HG+++QR R + L  F  G+ ++
Sbjct: 240 QPA-----SCVVFCNTKKDCQAVYDALNECHQSVLVLHGDMEQRERDQTLVRFANGSSRV 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +L A E+ +  +
Sbjct: 295 LVATDVAARGLDIKSLDMVINYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRAN 354

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLE 383
            +E+++  K++W +        PLE
Sbjct: 355 VLEEMLNIKLNWKSVPTGLTITPLE 379


>gi|302915827|ref|XP_003051724.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732663|gb|EEU46011.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 714

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 127/397 (31%), Positives = 215/397 (54%), Gaps = 35/397 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ +  L P+++  V   GY +PTPIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 279 NWRESNLPPRLLSVVDQVGYKEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLV 338

Query: 62  ILE-----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +      +   +   P  LIL PTREL  Q+    +K+ +        ++GG   E Q 
Sbjct: 339 YISDLPPLEDHNKNDGPYALILAPTRELVQQIETEAKKFAEPLGFRCVSIVGGHSLEEQA 398

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GA++++ TPGR++D   R  L++     +++DEADRM+D+GF   +  I   +P 
Sbjct: 399 YALRNGAEIIVATPGRLVDCIERRLLVLGQCCYVIMDEADRMIDLGFEESVNKILDALPV 458

Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           +                         RQT++++ATM   ++K+++ +L+ P  + +    
Sbjct: 459 SNEKPDTDDAENAQLMKRYLGGNDRYRQTMMYTATMPPVVEKIAKKYLRRPAVVTIGNAG 518

Query: 212 STAETIEHC--FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269
              +T+E    FV+   +  K+   LQ++L S+      I+F N K+N   +   ++  G
Sbjct: 519 EAVDTVEQRVEFVSGEDRRKKR---LQEILSSEAFAPPIIVFVNIKRNCDAVARDIKAMG 575

Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329
           +S   +HG+  Q  R   L++ + G  Q++VA+DLA RG+D+PDV  V NF++    E+Y
Sbjct: 576 WSAVTLHGSKTQEQREAALASVRAGHTQVLVATDLAGRGIDVPDVSLVVNFNMATNIESY 635

Query: 330 IHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
            HRIGRTGRAG+ G A T +  ED  ++  +++++ K
Sbjct: 636 THRIGRTGRAGKSGVAITFLGNEDADNMYDLKQILSK 672


>gi|50409637|ref|XP_456892.1| DEHA2A12958p [Debaryomyces hansenii CBS767]
 gi|74659543|sp|Q6BY27|DBP2_DEBHA RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49652556|emb|CAG84869.1| DEHA2A12958p [Debaryomyces hansenii]
          Length = 536

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 130/360 (36%), Positives = 193/360 (53%), Gaps = 11/360 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ KPT IQ +  P+ L   D+ GIA TG+GKT S+ LP +  
Sbjct: 107 FDEAGFPDYVLKEVKQQGFPKPTSIQCQGWPMALSGRDMVGIASTGSGKTLSYCLPSIVH 166

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+G +  +    + GG P   Q 
Sbjct: 167 INAQPLLSPGDG----PIVLVLAPTRELAVQIQQECSKFGSSSRIRNTCVYGGAPKGQQI 222

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG ++ I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 223 RDLARGVEICIATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 282

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E+Q ++ ++L +P ++ V +    A       V    ++ K+  L++
Sbjct: 283 DRQTLMWSATWPKEVQALTRDYLNDPIQVTVGSLELAASHTITQLVEVVTEFEKRDRLIK 342

Query: 237 QL-LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L   + D     +IF + K+    + + L   G+   AIHG+  Q  R  +L  FK G 
Sbjct: 343 HLETATADPEAKCLIFASTKRTCDEITNYLRADGWPALAIHGDKQQGERDWVLKEFKTGK 402

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+D+AARG+D+  + +V N D+P   E+Y+HRIGRTGRAG  G A +     + K
Sbjct: 403 SPIMVATDVAARGIDVKGISYVINLDMPGNIEDYVHRIGRTGRAGSTGTAVSFFTDNNSK 462


>gi|324506443|gb|ADY42751.1| ATP-dependent RNA helicase DDX17 [Ascaris suum]
          Length = 543

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 131/343 (38%), Positives = 193/343 (56%), Gaps = 5/343 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML--TILEKGR 67
           P  +  +L   + KPT IQ  + P+ +   D+  IA+TG+GKT +F+LP +  T  ++ R
Sbjct: 120 PAPITDLLYGSFQKPTIIQSISWPIAMSGRDIVSIAKTGSGKTLAFILPAIVHTANQQAR 179

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
           +    P  L+L PTRELA QV D  + Y K    ++  L GG P   Q + LERG DV+I
Sbjct: 180 SHREGPSVLVLLPTRELAQQVQDVAKDYCKVMGQSLTCLFGGAPKSGQARDLERGVDVII 239

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I S +   RQTL+FSAT 
Sbjct: 240 ATPGRLMDFLESGKTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMFSATW 299

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL--LQSQDTM 245
             +++K++ +F  +   + V +    A       V    + SK+  L+  L  + S+   
Sbjct: 300 PKDVRKLAMDFQTDAAHLNVGSLELAANHNITQIVEVLEESSKQQRLISILSDIMSEPEC 359

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
           K  IIF   K+   +L   + + G+    IHG+  Q  R   L  FK G   +++A+D+A
Sbjct: 360 KT-IIFVETKRKADDLTRWMRRDGWPALCIHGDKGQSERDWALGEFKAGKTPILLATDVA 418

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           ARGLD+ D+ +V N+D  N +E+Y+HRIGRTGR  + G A+T 
Sbjct: 419 ARGLDVDDIKYVINYDYSNNSEDYVHRIGRTGRCEKRGTAYTF 461


>gi|316979290|gb|EFV62098.1| ATP-dependent RNA helicase Dbp2 [Trichinella spiralis]
          Length = 540

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 141/396 (35%), Positives = 223/396 (56%), Gaps = 19/396 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F ++G +  +    L++ + KP+ IQ  + P+ L   D+ GIAQTG+GKT SF+LP +
Sbjct: 98  LTFEEVGFTDSLT-KQLNSNFAKPSVIQATSWPIALSGRDMVGIAQTGSGKTLSFLLPSI 156

Query: 61  TILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             + K + RV     P  L+L PTRELA QV +   +YG    +    + GG     Q +
Sbjct: 157 VHI-KHQPRVERGEGPIVLVLAPTRELAQQVQEVAIEYGSRNGVRSVCVYGGASKGPQQR 215

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +LERG +V I TPGR+LD    G   +     LV+DEADRMLDMGF P I+ I       
Sbjct: 216 ELERGVEVCIATPGRLLDFLRMGVTNLRRCTFLVLDEADRMLDMGFEPQIRQIVDQTRPD 275

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHC--FVATYAQYSKKCAL 234
           RQT++FSAT   E++ ++E+FL++   + + +    A   IE     V+ + ++ +   L
Sbjct: 276 RQTIMFSATWPTEVRALAESFLRDYVFVNIGSLQLAANHNIEQVVEIVSEFEKHERLLKL 335

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LQ++  ++D+    +IF   K+    L   L ++G+ V +IHG+  Q  R  +L+ F+ G
Sbjct: 336 LQEV--TKDSDPKVLIFVETKRKADELTRWLRQKGWPVLSIHGDKAQGERDWVLNEFRTG 393

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +++A+D+AARGLD+ D+  V N+D P  +E+Y+HRIGRTGR  R G A+T     + 
Sbjct: 394 KSPIVIATDVAARGLDVDDIKFVVNYDYPQCSEDYVHRIGRTGRCNRTGTAYTFFNANNA 453

Query: 355 KHI-DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
           ++  D I+ LIE K          +NP L ++ + +
Sbjct: 454 RYAKDLIDVLIEAK--------QHVNPKLYELGVME 481


>gi|310799184|gb|EFQ34077.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 603

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 138/355 (38%), Positives = 199/355 (56%), Gaps = 21/355 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
           + Y KPTPIQ  + P  L R DV G+A+TG+GKT +F LP++  + K   + R  + +++
Sbjct: 200 SAYKKPTPIQSASWPYTLSRRDVIGVAETGSGKTMAFALPLVEGISK--IKKRCIKAVVV 257

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA Q  +  E       L    + GG   + Q   L RGADV++ TPGR+ D   
Sbjct: 258 SPTRELAMQTQEQMEHVSSLLGLKSICIYGGASKDDQRALLRRGADVIVATPGRLKDFMM 317

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TRQTLLFSATMTDELQKVSE 196
            G + + +++  V+DEADRMLD GF   I+ I   +P    RQT++F+AT    ++K++E
Sbjct: 318 DGTISLQDVKFAVLDEADRMLDKGFEEDIKMILGDMPAREARQTVMFTATWPASVRKLAE 377

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCF-----------VATYAQYSKKCALLQQLLQSQDT- 244
           +F+ +P  ++V   SS  ET                V      +K+  LLQ L Q Q T 
Sbjct: 378 SFMVDP--VKVTIGSSGKETANGAVELQANTRITQRVEVVDPRAKEQRLLQLLKQWQATA 435

Query: 245 -MKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             KN   ++FC  KK    +   L+++G  V  IHG++ Q  R + L  FK GT  ++VA
Sbjct: 436 SQKNDRILVFCLYKKEATRVEAFLQQRGIRVGGIHGDLRQEQRTRSLEAFKAGTTPVLVA 495

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +D+AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG+ G+A TL  + D  H
Sbjct: 496 TDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKTGEAITLFTEHDKAH 550


>gi|255093167|ref|ZP_05322645.1| ATP-dependent RNA helicase [Clostridium difficile CIP 107932]
 gi|255314909|ref|ZP_05356492.1| ATP-dependent RNA helicase [Clostridium difficile QCD-76w55]
 gi|255517583|ref|ZP_05385259.1| ATP-dependent RNA helicase [Clostridium difficile QCD-97b34]
 gi|260683781|ref|YP_003215066.1| ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260209944|emb|CBA63924.1| ATP-dependent RNA helicase [Clostridium difficile CD196]
          Length = 497

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 218/371 (58%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L+ K++ ++   GY  P+ +Q + IP +L+  ++   ++TG+GKTASF +P+   
Sbjct: 5   FEKFKLNEKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLC-- 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E         + LI+ PTRELA QV D     G+   +  + + G    + Q  +L++ 
Sbjct: 63  -ENINVDCNNIQALIVVPTRELALQVKDEISDIGRLKKVRCSAIFGKQSIKDQIAELKQR 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH N+G + + N++ LVIDEAD+M + GF+  ++ I   +P  +   L
Sbjct: 122 VHIVVATPGRILDHINKGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVSL 181

Query: 183 FSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           FSAT+ +E++ + E ++ +     IE N   +  +T +       A   +K  LL++L+ 
Sbjct: 182 FSATIDEEIKYICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYILLKELIY 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++  K+ IIFCN K+ V  L + + K+GF +  +H ++ Q  R+ ++ +FK     ++V
Sbjct: 242 SENP-KSVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQKFNILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +SD+A+RG+ I D+  V N+DVP   ENYIHRIGRTGR G  GKA T+V ++D K+I+ I
Sbjct: 301 SSDVASRGIHIDDISLVINYDVPQDKENYIHRIGRTGRKGNSGKAITIVTEKDEKYIENI 360

Query: 361 EKLIEKKVDWL 371
           E  I  KV+ L
Sbjct: 361 ETYIGYKVNEL 371


>gi|251764758|sp|B7ZTW1|IF4A3_XENTR RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|213624377|gb|AAI71014.1| hypothetical protein LOC100135173 [Xenopus (Silurana) tropicalis]
          Length = 415

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 208/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 44  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQC 103

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 104 LD---IQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 160

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q  L
Sbjct: 161 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCL 220

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 221 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 279

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 280 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 335

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 336 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 395

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 396 IEQYYSTQIDEMPMNVADL 414


>gi|166157858|ref|NP_001107349.1| eukaryotic initiation factor 4A-III [Xenopus (Silurana) tropicalis]
 gi|163916017|gb|AAI57178.1| LOC100135173 protein [Xenopus (Silurana) tropicalis]
          Length = 415

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 208/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 44  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQC 103

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 104 LD---IQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 160

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q  L
Sbjct: 161 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCL 220

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 221 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 279

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 280 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 335

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 336 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 395

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 396 IEQYYSTQIDEMPMNVADL 414


>gi|253988777|ref|YP_003040133.1| ATP-dependent RNA helicase SrmB [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780227|emb|CAQ83388.1| srmB [Photorhabdus asymbiotica]
          Length = 448

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 135/354 (38%), Positives = 202/354 (57%), Gaps = 4/354 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L L  +++ A+ + GY +PT IQ   IP  +   DV G A TGTGKTA+++LP L 
Sbjct: 5   NFSELDLDERLLDALNNKGYSRPTAIQAAAIPAAMDGRDVLGSAPTGTGKTAAYLLPALQ 64

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVA+  ++   + NL +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVANQAKELAAHTNLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFANDIETIAGETRWRKQT 184

Query: 181 LLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT+  D ++  +E  L++P  I+   PS         F         K ALL  LL
Sbjct: 185 MLFSATLEGDAIRDFAERLLKDPIEIDAE-PSRRERKKIQQFYYRADNLKHKTALLCHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  K+ IIF  +++ V  L   L + G     + G + Q  R + +    +G++ ++
Sbjct: 244 KQPDVTKS-IIFVRKRERVHELVDELRQAGIKAWYLEGEMVQAKRTEAVKRLNDGSVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           V++D+A+RGLDI D+ HVFNFD+P  A+ Y+HRIGRT RAGR G A TLV   D
Sbjct: 303 VSTDVASRGLDIDDISHVFNFDLPRTADVYLHRIGRTARAGRKGTAITLVEAHD 356


>gi|324006198|gb|EGB75417.1| DEAD/DEAH box helicase [Escherichia coli MS 57-2]
          Length = 432

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 134/360 (37%), Positives = 210/360 (58%), Gaps = 8/360 (2%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84
           TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++     +   + L+L PTREL
Sbjct: 2   TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID---VSLFQTQGLVLCPTREL 58

Query: 85  AAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           A QVA    +  +   N  +  L GG PF  Q   L+    +++ TPGR+LDH  +G + 
Sbjct: 59  ADQVAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVS 118

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT  + +  +S    ++P 
Sbjct: 119 LDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPL 178

Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
            IE+++ +     IE  F  T ++   K  LLQ+LL S     + ++FCN KK+  ++C 
Sbjct: 179 AIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPSSCVVFCNTKKDCQSVCD 234

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
           +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V NF++ 
Sbjct: 235 ALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELA 294

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
              E ++HRIGRT RAG  G A +  A E+ +  + I  +++ K++W     +S   PLE
Sbjct: 295 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVPLE 354


>gi|221107786|ref|XP_002161873.1| PREDICTED: vasa-related protein CnVAS1 [Hydra magnipapillata]
          Length = 797

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 130/361 (36%), Positives = 208/361 (57%), Gaps = 14/361 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA+  +   ++  V  A Y+KPTP+Q   IP++    D+   AQTG+GKTA+F++P+L 
Sbjct: 354 EFAEANIDRTILENVEKAHYIKPTPVQKYAIPIITGNRDLMSCAQTGSGKTAAFLIPVLN 413

Query: 62  ILEKGRAR-------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            L + R+        V+ P  L++ PTRELA Q+     K+ +N ++   ++ GG+    
Sbjct: 414 TLMQFRSELTSSLSEVQAPLALVIAPTRELAVQIQKEARKFAQNTSIKPVVIYGGVQVAY 473

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +++++G  +L+ TPGR+ D   + K+ + N++ L++DEADRMLDMGF+P I+ I +  
Sbjct: 474 HLRQVQQGCHLLVGTPGRLKDFLGKRKISLANLKYLILDEADRMLDMGFLPEIKAIINDF 533

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  R TL+FSAT   E+Q ++  FL N   + +     T   I  C +    + S 
Sbjct: 534 DMPPKEDRHTLMFSATFPTEIQNLAAEFLNNYVYLTIGKVGGTHSDITQCIMEV--EESA 591

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K   L ++L ++ T +N ++F   K+    L   L + GF   +IHG+  Q+ R + L+ 
Sbjct: 592 KRDKLIEILDTEGTNRN-LVFVQTKRLADFLASYLCQNGFHTTSIHGDRLQQQREEALAE 650

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK GT  +++A+ +AARGLDI DV  V N+D+P+  E YIHRIGRTGR G  GKA +   
Sbjct: 651 FKAGTQHVLIATAVAARGLDIADVKQVINYDLPDEIEEYIHRIGRTGRIGNKGKAISFFT 710

Query: 351 K 351
           +
Sbjct: 711 R 711


>gi|325296847|ref|NP_001191665.1| ATP-dependent RNA helicase DDX5 [Aplysia californica]
 gi|304441889|gb|ADM34180.1| ATP-dependent RNA helicase DDX5 [Aplysia californica]
          Length = 600

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 134/368 (36%), Positives = 207/368 (56%), Gaps = 20/368 (5%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEK 65
           V+  +    +  PT IQ +  P+ L   ++ GIAQTG+GKT  F+LP +        LE 
Sbjct: 116 VMSQIRRNSWQSPTAIQSQAWPIALSGRNLVGIAQTGSGKTLGFILPAIVHVNHQPYLEH 175

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
           G      P  L+L PTRELA QV +   ++G+   L  A + GG P   Q + LERGA++
Sbjct: 176 GDG----PIVLVLVPTRELAQQVLEVSNEFGRASQLKTACVYGGAPKGPQLRDLERGAEI 231

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
            I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL++SA
Sbjct: 232 CIATPGRLIDFLEAGKTNLRRTTYLVLDEADRMLDMGFEPQIRKILDQIRPDRQTLMWSA 291

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQLLQ 240
           T   E+++++E FL +  ++ +     TA     + I+ C    + +  K   LL +++Q
Sbjct: 292 TWPKEVRRLAEEFLNDYIQVNIGALQLTANHNILQIIDVCM--DHEKEEKLVKLLNEIMQ 349

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     +IF   K+   ++   +++ G+ V +IHG+  Q+ R   L++F+ G   ++V
Sbjct: 350 EKENKT--LIFVETKRKADDIARRMKRDGWPVLSIHGDKSQQERDWALNDFRNGRNPILV 407

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI-DA 359
           A+D+A+RGLD+ D+  V NFD PN +E+Y+HRIGRTGR+   G A+T     + K   D 
Sbjct: 408 ATDVASRGLDVEDIKFVINFDYPNCSEDYVHRIGRTGRSTNTGTAYTFFTPGNAKQASDL 467

Query: 360 IEKLIEKK 367
           +  L E K
Sbjct: 468 VNVLREAK 475


>gi|312899136|ref|ZP_07758514.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
 gi|310619803|gb|EFQ03385.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
          Length = 419

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 131/369 (35%), Positives = 207/369 (56%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  +V A+ +    +PT +Q + +P  L+ H++   AQTGTGKT +F+LP+   
Sbjct: 5   FASLGINASLVEALTNQHITEPTAVQEQAVPAALKGHNLLVQAQTGTGKTLAFLLPIFQG 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++K    V M + LI+ PTREL+ Q+A   + +     L +  LIGG   E Q +KL R 
Sbjct: 65  IKKD---VSMTQALIMAPTRELSEQLATVADSFTPVTGLDILNLIGGKTIENQLQKLHRR 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH  R  L ++ +  +V+DEAD+ML  GF+  +  +  + P  RQ L 
Sbjct: 122 PQVIIGTPGRLLDHCRRNSLDLSGVHYVVVDEADQMLQSGFLSEVDELIGMTPKKRQLLF 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEH--CFVATYAQYSKKCALLQQLL 239
           FSAT+ D+++ +++  +  P  + V    + T E IE     ++   ++ K C +L +  
Sbjct: 182 FSATIPDKVRSLAKKHMDRPLSLTVREGETVTLENIEQRIYMMSEDRKFEKLCDMLTEF- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++FCN K     L   L  +GF+V  + G++ Q  R +++ +F +   Q++
Sbjct: 241 ----NPYLAVVFCNTKDRTKKLASDLIARGFNVAELQGDMSQGRRNQVMRDFAKAKTQIL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARG+DI  + HVF++DVP   + YIHRIGRTGRAG  G +       D   I  
Sbjct: 297 VASDIAARGIDIEGISHVFSYDVPGDTDYYIHRIGRTGRAGSSGLSVMFATGADEDKIRR 356

Query: 360 IEKLIEKKV 368
           IE  I+  +
Sbjct: 357 IEHTIQATI 365


>gi|225562366|gb|EEH10645.1| ATP-dependent RNA helicase DED1 [Ajellomyces capsulatus G186AR]
          Length = 694

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 138/365 (37%), Positives = 204/365 (55%), Gaps = 18/365 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +  L   ++  ++ A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 205 FTNPPLHEHLLSNIVLARYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQ 264

Query: 62  -----------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                          GR +   P  LIL PTREL +Q+ D   K+     L   ++ GG 
Sbjct: 265 SLHTRGPEAEAARGLGRQQKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVYGGA 324

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L++G +VL+ TPGR++D   RG++ + +I+ LV+DEADRMLDMGF P I+ I
Sbjct: 325 EMGNQLRQLDQGCNVLVATPGRLVDMMERGRISLAHIQYLVLDEADRMLDMGFEPQIRRI 384

Query: 171 T--SLVP--FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
              S +P    RQTL+FSAT   ++QK++E FL++   + V    ST+E I    V   +
Sbjct: 385 VQGSDMPDKHMRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRIVECES 444

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              K  ALL  L    D+    ++F   K+    L   L        AIHG+  QR R +
Sbjct: 445 DKDKDSALLDILC--SDSTGLTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERER 502

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G   ++VA+ +AARGLDIP+V HV N+D+PN  ++Y+HRIGRTGRAG  G + 
Sbjct: 503 ALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGIST 562

Query: 347 TLVAK 351
              ++
Sbjct: 563 AFFSR 567


>gi|148828072|ref|YP_001292825.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae PittGG]
 gi|189040031|sp|A5UI36|RHLB_HAEIG RecName: Full=ATP-dependent RNA helicase rhlB
 gi|148719314|gb|ABR00442.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG]
          Length = 415

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 138/372 (37%), Positives = 213/372 (57%), Gaps = 10/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   +        PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 71  LLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQVI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177
           E G D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P    
Sbjct: 131 ECGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           R T+LFSAT++ ++++++   + +P+ IE+     T   I E  F   Y     K ALL 
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELF---YPSNQDKMALLL 247

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ +   +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G +
Sbjct: 248 TLMEDE-WPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDL 306

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   +
Sbjct: 307 DILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMN 366

Query: 357 IDAIEKLIEKKV 368
           + AIE+ I   +
Sbjct: 367 LPAIEEYIGHSI 378


>gi|15223841|ref|NP_175549.1| eukaryotic translation initiation factor 4A, putative / eIF-4A,
           putative [Arabidopsis thaliana]
 gi|108861889|sp|Q9C8J1|RH34_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 34
 gi|4836949|gb|AAD30651.1|AC006085_24 RNA helicase [Arabidopsis thaliana]
 gi|16604541|gb|AAL24276.1| At1g51380/F11M15_24 [Arabidopsis thaliana]
 gi|18958046|gb|AAL79596.1| At1g51380/F11M15_24 [Arabidopsis thaliana]
 gi|332194539|gb|AEE32660.1| DEAD-box ATP-dependent RNA helicase 34 [Arabidopsis thaliana]
          Length = 392

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 133/376 (35%), Positives = 203/376 (53%), Gaps = 11/376 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+G++ KV+  V D GY KP+ IQ + +  +L+  DV   AQ+GTGKT+   + +  I
Sbjct: 24  FDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQI 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +     +V++   L+L P+RELA+Q     +  G + N+     IGG       KKLERG
Sbjct: 84  VNISSRKVQV---LVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
              +  TPGR+ D   RG L    +++LV+DE+D ML  G    I ++   +P   Q  L
Sbjct: 141 VHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT---YAQYSKKCALLQQLL 239
            SAT+  E+ +++E F+ +P RI V     T E I+  +V       ++   C L  +L 
Sbjct: 201 ISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGRL- 259

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   IIFCN ++ V  L   +    F V ++HG+  Q+ R  I++ F+    +++
Sbjct: 260 ----TINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +ASD+ ARG+D+  V HV N+D+PN  E YIHRIGR GR GR G A   V   D+K +  
Sbjct: 316 IASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKD 375

Query: 360 IEKLIEKKVDWLNGDL 375
           IE+    K+  +  DL
Sbjct: 376 IERHYGTKIREMPADL 391


>gi|5270|emb|CAA36873.1| p68 protein [Schizosaccharomyces pombe]
          Length = 550

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 136/393 (34%), Positives = 212/393 (53%), Gaps = 24/393 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+  PTPIQ +  P+ +   D+ GI+ TG+GKT S+ LP +  
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 183

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 184 INAQPLLSPGDG----PIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPLGPQI 239

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L RG ++ I TPGR+LD  +  K  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 240 LDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 299

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL-- 234
            RQT++FSAT   E+Q+++ ++L +  ++ V +    A       V       K+  L  
Sbjct: 300 DRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGK 359

Query: 235 -LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            ++++L+ +D     +IF   K+   ++   L + G+   AIHG+  Q  R  +L+ F+ 
Sbjct: 360 DIEEVLKDRDNKV--LIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRT 417

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +MVA+D+A+RG+D+  + HVFN+D P   E+Y+HRIGRTGRAG  G A+T    ++
Sbjct: 418 GKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDN 477

Query: 354 IKHI-DAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
            K   + +  L E K D        ++P LE++
Sbjct: 478 AKQARELVSILSEAKQD--------IDPKLEEM 502


>gi|313108824|ref|ZP_07794809.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
 gi|310881311|gb|EFQ39905.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
          Length = 441

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 138/371 (37%), Positives = 209/371 (56%), Gaps = 3/371 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ A+    + +PTP+Q   IP  L+ HD+   AQTG+GKTA+F+LP+L  
Sbjct: 2   FSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFLLPLLHR 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L        + R LIL PTRELA Q     E++ +   +   L+ GG  F+ Q  +L + 
Sbjct: 62  LLAEDKPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRKN 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +++I TPGR+L+  N G L + +IE+LV+DEADRMLDMGF   +  + +  P  RQTLL
Sbjct: 122 PEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAERQTLL 181

Query: 183 FSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT +   L KV    L+ P+ + +N      E +    V T    + K  LLQ LL S
Sbjct: 182 FSATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQ-VITADDVAHKEQLLQWLL-S 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +T    I+F N + +   L   L      V  +HG  DQ+ R   +   K+G ++++VA
Sbjct: 240 NETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + ++E
Sbjct: 300 TDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDWNLMSSVE 359

Query: 362 KLIEKKVDWLN 372
           + +++  +  N
Sbjct: 360 RYLKQNFERRN 370


>gi|41248|emb|CAA36872.1| unnamed protein product [Escherichia coli]
 gi|315619429|gb|EFU99973.1| ATP-independent RNA helicase dbpA [Escherichia coli 3431]
          Length = 432

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 131/347 (37%), Positives = 205/347 (59%), Gaps = 8/347 (2%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84
           TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   A +   + L+L PTREL
Sbjct: 2   TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID---ASLFQTQALVLCPTREL 58

Query: 85  AAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           A QVA    +  +   N  +  L GG PF  Q   L+    +++ TPGR+LDH  +G + 
Sbjct: 59  ADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVS 118

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT  + +  +S    ++P 
Sbjct: 119 LDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPL 178

Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
            IE+++ +     IE  F  T ++   K  LLQ+LL S     + ++FCN KK+   +C 
Sbjct: 179 AIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPSSCVVFCNTKKDCQAVCD 234

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
           +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V NF++ 
Sbjct: 235 ALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELA 294

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
              E ++HRIGRT RAG  G A +  A E+ +  + I  +++ K++W
Sbjct: 295 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNW 341


>gi|209880309|ref|XP_002141594.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209557200|gb|EEA07245.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 939

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 141/401 (35%), Positives = 222/401 (55%), Gaps = 5/401 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G S  ++ AV   GY  PTPIQ +  P +L   DV  +A+TG+GKT +FVLPML  
Sbjct: 7   FHTFGFSSPIIEAVRHIGYSLPTPIQRRCFPAILAGRDVVAMARTGSGKTIAFVLPMLQR 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L    + +   R LIL PTREL  Q      K+    ++ +  L GG   + Q + L   
Sbjct: 67  LGCKHSTIVGIRGLILSPTRELVLQTYRVVRKFAIKTDIRICTLTGGSSLDRQFENLSGN 126

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR+  H    KL ++ I ++V+DEADR+ + G +P I +I  ++P +RQ +L
Sbjct: 127 PDIVIATPGRLCHHIVEAKLSLSAICMIVLDEADRLFETGLMPQIDDIMKIIPASRQCIL 186

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM   L   S   L  P+ I +++    ++T++  F+ T  +  K   LL  L  + 
Sbjct: 187 VSATMPTGLVSFSRAKLVEPEFIRLDSDHLISDTLKLIFIFT-REDDKLATLLYLLRVTI 245

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  ++FC  K +V  L   L +   ++ +I+GN+DQ +R   L++F+    ++M+ +
Sbjct: 246 PHNERVMVFCATKHHVEYLAKILTECNINIGSIYGNMDQDARNAQLNSFRRNKTRVMIVT 305

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIP + +V NFD P  A+ ++HR GRTGRAG+ GKAF+LV   D+ +   +  
Sbjct: 306 DIAARGLDIPLLENVINFDYPLSAKLFVHRTGRTGRAGKMGKAFSLVTARDLPYTVDLML 365

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
            +  +V  L     + +P ++  DI+  N   K+N I  +S
Sbjct: 366 FLGLRVSTLTN--KTKDPNIQATDIS--NIGDKDNNITLES 402


>gi|326913476|ref|XP_003203064.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like [Meleagris
           gallopavo]
          Length = 695

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 218/392 (55%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 218 FSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 277

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 278 IYADGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVY 337

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 338 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 397

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 398 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 456

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + +   K + L  LL +       ++F   KK    L   L  +G++  +IHG+  QR 
Sbjct: 457 -WVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRD 515

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 516 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 575

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 576 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 607


>gi|227525|prf||1705301A ATP dependent RNA helicase
          Length = 697

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 219/392 (55%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ +   ++  +    Y +PTP+Q   IP+++++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 223 FHDVTMGEIIMGNIQLTRYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPILSQ 282

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 283 IYADGPGDAMKHLQENGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVY 342

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 343 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 402

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   RQT++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 403 RRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVV- 461

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + +   K   L  LL +       ++F   KK    L   L ++G++  +IHG+  QR 
Sbjct: 462 -WVEEMDKRDFLLDLLNATGKDSLTLVFVETKKGADALEDFLYEEGYACTSIHGDRSQRD 520

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+ RIGRTGR G  G
Sbjct: 521 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVERIGRTGRVGNLG 580

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   +++I    D ++ L+E K +   WL
Sbjct: 581 LATSFFNEKNINITKDLLDLLVEAKQEVPSWL 612


>gi|289434525|ref|YP_003464397.1| DbpA-type ATP-dependent RNA helicase [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170769|emb|CBH27309.1| DbpA-type ATP-dependent RNA helicase [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 474

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 130/350 (37%), Positives = 198/350 (56%), Gaps = 17/350 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
           D  +L LS ++  A+ + GY   TP+Q + IP+ L   D+   +QTG+GKTA+F +P+  
Sbjct: 4   DMNNLKLSEEIKRAINELGYKDATPVQKEVIPVALTGKDIVAKSQTGSGKTAAFAIPIAE 63

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I E+ +     P+ LI+ PTREL  QV       G+   +  A + G  PF  Q  +L
Sbjct: 64  QVIWEENK-----PQALIIVPTRELGVQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLEL 118

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   +++ TPGR+LDH  +G L ++ +  LV+DE D ML MGFI  +++I   +P  RQ
Sbjct: 119 SQKNHIVVGTPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLSMGFIDQVEDILQFLPKKRQ 178

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSATM DE+Q + + + ++P  IE+   +     I H  +    Q   K   LQ +L
Sbjct: 179 NLFFSATMPDEMQDLIKRYQEDPVVIEM--AAEKTNPITHIEM----QTENKEKTLQDVL 232

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++   + IIFCN K  V  L   L+    +   IHG + Q  R + + +FK G  + +
Sbjct: 233 ITENP-DSAIIFCNTKNQVDELSDLLQ---VNAAKIHGGLRQEERFRAMDDFKSGKSRFL 288

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +A+D+A RG+D+ +V  V N+D+P   ENY+HRIGRTGRAG  GKA + V
Sbjct: 289 IATDVAGRGIDVENVTLVINYDLPVEKENYVHRIGRTGRAGNSGKAISFV 338


>gi|156720285|dbj|BAF76795.1| vasa-related protein [Enchytraeus japonensis]
          Length = 516

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 140/371 (37%), Positives = 213/371 (57%), Gaps = 18/371 (4%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEKG-----RAR 69
           V  A Y KPTPIQ   IP++L + D+   AQTG+GKTA+F+LP+L T+L  G      + 
Sbjct: 92  VRKANYDKPTPIQKWAIPIILAKRDLMACAQTGSGKTAAFLLPVLSTMLRNGIEGSSYSE 151

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           V+ P+ +I+ PTREL +Q+ +   K+  N  +   ++ GG+    Q +++E+GA +++ T
Sbjct: 152 VQEPQAIIVGPTRELVSQIFNEARKFSYNTIVRPVVVYGGVQTSYQLREIEKGAHMIVGT 211

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF---IPYIQNITSLVPF-TRQTLLFSA 185
           PGR+LD   RGK+ +  ++ L++DEADRMLD+GF   I  + N   + P   RQTL+FSA
Sbjct: 212 PGRLLDFIGRGKISLKKVKFLILDEADRMLDLGFKDDIKKLMNELGMPPKQERQTLMFSA 271

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           T  +E+Q ++   L +   + V         IE   V    Q+ K+  L+  L    +  
Sbjct: 272 TFPEEVQSLARELLNDYLFVTVGRVGGANTDIEQ-MVYNVGQFDKRQKLIDLLNACPN-- 328

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
           +  ++F  QK+N   L   L +      +IHG+ +QR R   L++FK G   ++VA+ +A
Sbjct: 329 ERVLVFVEQKRNADFLASFLSQSELPTTSIHGDREQREREIALNDFKSGRKPILVATSVA 388

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIEKLI 364
           ARGLDIP V HV N+D+P   + Y+HRIGRTGR G  GKA T    E D     A+ K++
Sbjct: 389 ARGLDIPGVMHVVNYDMPKEIDEYVHRIGRTGRCGNMGKATTFFNPETDAGLARALAKIL 448

Query: 365 ----EKKVDWL 371
               ++  DWL
Sbjct: 449 TDAQQELPDWL 459


>gi|90577843|ref|ZP_01233654.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90440929|gb|EAS66109.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 446

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 131/373 (35%), Positives = 207/373 (55%), Gaps = 5/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL P+++  +    + + T IQ   IP+ +   D+   ++TG+GKT +F+LP +
Sbjct: 1   MHFKDLGLDPRLLKKINHLAFDRATEIQQTAIPVAIAGKDILASSKTGSGKTLAFLLPAM 60

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + + +   R  PR LIL PTRELA QV                L++GG  F  Q K L
Sbjct: 61  QRMYRSKPFTRRDPRVLILTPTRELAKQVFAQLRTLNAGTPYDGTLIVGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
                 ++ TPGR+ DH       ++ +E+L++DEADRMLD+GF   ++ I       R 
Sbjct: 121 RNDPMFVVATPGRLADHLEHRSTRLDGLEMLILDEADRMLDLGFEAQLRRINEAANHRRR 180

Query: 179 QTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+   ++ +++   L NPKRI +   +   + I   F+        K ALL +
Sbjct: 181 QTLMFSATLDHSDVVEIASEMLDNPKRISIGHSAEEHKDITQRFILC-DHLDHKQALLDK 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L++QD  K  IIF   + +   L   L ++     A+ G+++Q  R  I+S F+    +
Sbjct: 240 ILETQD-YKQVIIFTATRADTDRLTAELNERKLKAVALSGSLNQNQRNSIMSQFERTCHK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLDI +V  V NFD+P  AE Y+HR+GRTGRAG  G A +LV  +D K  
Sbjct: 299 ILVTTDIASRGLDIDNVSLVINFDMPKHAEEYVHRVGRTGRAGNKGDAISLVGPKDWKSF 358

Query: 358 DAIEKLIEKKVDW 370
             +E  +++K+++
Sbjct: 359 KNVEAFLKQKIEF 371


>gi|116051486|ref|YP_789681.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586707|gb|ABJ12722.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 446

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 137/371 (36%), Positives = 209/371 (56%), Gaps = 3/371 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ A+    + +PTP+Q   IP  L+ HD+   AQTG+GKTA+F+LP+L  
Sbjct: 7   FSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFLLPLLHR 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L        + R LIL PTRELA Q     E++ +   +   L+ GG  F+ Q  +L + 
Sbjct: 67  LLAEDKPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRKN 126

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +++I TPGR+L+  N G L + +IE+LV+DEADRMLDMGF   +  + +  P  RQTLL
Sbjct: 127 PEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAERQTLL 186

Query: 183 FSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT +   L KV    L+ P+ + +N      E +    + T    + K  LLQ LL S
Sbjct: 187 FSATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVI-TADDVAHKEQLLQWLL-S 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +T    I+F N + +   L   L      V  +HG  DQ+ R   +   K+G ++++VA
Sbjct: 245 NETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKILVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + ++E
Sbjct: 305 TDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDWNLMSSVE 364

Query: 362 KLIEKKVDWLN 372
           + +++  +  N
Sbjct: 365 RYLKQNFERRN 375


>gi|315289076|gb|EFU48474.1| DEAD/DEAH box helicase [Escherichia coli MS 110-3]
          Length = 432

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 135/360 (37%), Positives = 210/360 (58%), Gaps = 8/360 (2%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84
           TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   A +   + L+L PTREL
Sbjct: 2   TPVQDAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID---ASLFQTQALVLCPTREL 58

Query: 85  AAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           A QVA    +  +   N  +  L GG PF  Q   L+    +++ TPGR+LDH  +G + 
Sbjct: 59  ADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVS 118

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT  + +  +S    ++P 
Sbjct: 119 LDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPL 178

Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
            IE+++ +     IE  F  T ++   K  LLQ+LL S     + ++FCN KK+  ++C 
Sbjct: 179 AIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPSSCVVFCNTKKDCQSVCD 234

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
            L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V NF++ 
Sbjct: 235 VLNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELA 294

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
              E ++HRIGRT RAG  G A +  A E+ +  + I  +++ K++W     +S   PLE
Sbjct: 295 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTLPANSSIVPLE 354


>gi|157371044|ref|YP_001479033.1| ATP-dependent RNA helicase DbpA [Serratia proteamaculans 568]
 gi|157322808|gb|ABV41905.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
          Length = 460

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 216/371 (58%), Gaps = 8/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L
Sbjct: 4   VSFSSLPLPAEQLANLNELGYAEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
             +   +      + LIL PTRELA QV+    +  +   N+ +  L GG P   Q   L
Sbjct: 64  DKINVAQV---AAQALILCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGPQLDSL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +++ TPGRI +H  +  L+++ +++LV+DEADRMLDMGF   I ++ S  P  RQ
Sbjct: 121 VHAPHIVVGTPGRIQEHLRKKTLVLDELKVLVLDEADRMLDMGFADDIDDVISYTPPQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    ++++S    ++P  +EV+       TIE  F  T  +  +   L+  + 
Sbjct: 181 TLLFSATYPSGIERISARVQRSPLNVEVDD-GEEQTTIEQRFYET-TRDQRPAVLVSAIR 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q +  + ++FCN K++  ++  +LE +G +V A+HG+++QR R ++L  F   + +++
Sbjct: 239 HYQPS--SCVVFCNTKRDCQSVYEALESRGINVLALHGDLEQRDRDQVLVRFANRSCRVL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++  V N+++    E ++HRIGRTGRAG  GKA +L   +++    A
Sbjct: 297 VATDVAARGLDIKELELVVNYELAFDPEVHVHRIGRTGRAGLSGKAISLCTPQEMTRAHA 356

Query: 360 IEKLIEKKVDW 370
           IE  ++ KV W
Sbjct: 357 IEDYLQTKVKW 367


>gi|2558533|emb|CAA73349.1| putative RNA helicase (DEAD box) [Danio rerio]
          Length = 688

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 142/396 (35%), Positives = 221/396 (55%), Gaps = 29/396 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +   ++  +  + Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 210 FHDLEMGEIIMGNINLSRYTRPTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQ 269

Query: 63  L-----------------EKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV 103
           +                 E G+   R + P +L+L PTRELA Q+ D   K+    ++  
Sbjct: 270 IYTDGPGEALQAAKNSAQENGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRSHVRP 329

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163
            ++ GG     Q + LERG  +L+ TPGR++D   RGK+ ++    LV+DEADRMLDMGF
Sbjct: 330 CVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGF 389

Query: 164 IPYIQNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
            P I+ I    ++ P   RQT++FSAT   E+Q ++ +FL++   + V    ST+E I  
Sbjct: 390 EPQIRRIVEQDTMPPKGLRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQ 449

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
             V  + + + K + L  LL +       ++F   KK    L   L ++G++  +IHG+ 
Sbjct: 450 KVV--WVEENDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDR 507

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            QR R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR 
Sbjct: 508 SQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRV 567

Query: 340 GRHGKAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
           G  G A +    ++     D ++ L+E K +   WL
Sbjct: 568 GNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWL 603


>gi|225710224|gb|ACO10958.1| Probable ATP-dependent RNA helicase DDX49 [Caligus rogercresseyi]
          Length = 454

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 142/379 (37%), Positives = 216/379 (56%), Gaps = 16/379 (4%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LGL P +       G   P+P+Q +T+P +L   +  GIA+TG+GKTA+F LP+L  L +
Sbjct: 4   LGLKPWLSKQCEAIGLKSPSPVQRETVPKILDGQNGIGIAKTGSGKTAAFALPILDALSE 63

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
               +     L+L PTRELA Q+AD F+  GK  N+ V+++IGG     Q  +L     +
Sbjct: 64  DPYGIY---ALVLTPTRELAYQIADTFKILGKPLNVKVSIIIGGRDMVLQGSELASSPHI 120

Query: 126 LICTPGRILDHFNRGKLL--MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
           +I TPGR+ DH N       +  I+ LVIDEADR+L+ GF   I  I + +P +RQTLLF
Sbjct: 121 VIATPGRLADHLNTHSQSSPLKKIKFLVIDEADRLLEGGFDEAIGRIFASIPRSRQTLLF 180

Query: 184 SATMTDELQKV------SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +AT ++ L+++       E+F    +  E +    T  T++  +V T A + +   L+  
Sbjct: 181 TATHSESLKELIVANSEKEHFYY--REGEDDASGLTVNTLDQHYVLTPADF-RDAYLIGV 237

Query: 238 LLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L++ Q    N   IIF    K    L  +L K GFS  A+H    QR R++ LS F+   
Sbjct: 238 LMKIQKESPNASFIIFARTCKIAQILSLTLGKLGFSNVALHSMKPQRERLEALSRFRSHL 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++A+D+A+RGLDIP V +V N ++P  A  Y+HR+GRT RAGR G A +L+   D+ 
Sbjct: 298 AKILIATDVASRGLDIPHVEYVINHNIPTEATEYVHRVGRTARAGRRGTAISLLTPHDVL 357

Query: 356 HIDAIEKLIEKKVDWLNGD 374
            +++IE+LI  K+   + D
Sbjct: 358 LLESIEELIGSKLSEYSVD 376


>gi|115374548|ref|ZP_01461828.1| DbpA RNA binding domain family [Stigmatella aurantiaca DW4/3-1]
 gi|310823766|ref|YP_003956124.1| ATP-dependent helicase, dead/deah-box family [Stigmatella
           aurantiaca DW4/3-1]
 gi|115368418|gb|EAU67373.1| DbpA RNA binding domain family [Stigmatella aurantiaca DW4/3-1]
 gi|309396838|gb|ADO74297.1| ATP-dependent helicase, DEAD/DEAH-box family [Stigmatella
           aurantiaca DW4/3-1]
          Length = 812

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 131/362 (36%), Positives = 197/362 (54%), Gaps = 5/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL LS  +  A+ + GY  PTP+Q K     ++  D+   ++TGTGKTA+F LP+L
Sbjct: 29  VSFEDLHLSEPLRRAIAERGYTHPTPVQAKAFQPAMEGRDLIVRSKTGTGKTAAFGLPLL 88

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK  A  R  R LIL PTRELA QVAD     GK   + VA + GG   + Q   LE
Sbjct: 89  ---EKIPADERRVRALILCPTRELALQVADELRALGKYKGVKVAAIYGGASMKQQEDALE 145

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGR+ DH  RG L ++  +  V+DEAD ML+ GF   +  I   +P  RQ 
Sbjct: 146 EGTPIIVGTPGRVFDHIGRGNLKLDACDHAVLDEADEMLNQGFYEEVTRILDRLPKNRQV 205

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++Q +   +  N + + ++    T E I H        + K   L+  L +
Sbjct: 206 LLFSATVPTDIQNLIARYTTNAETLLLSGDVFTVEHIHHIRYDVSDAFPKPRNLIYVLEK 265

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    N IIFCN + +   +   L + GF    ++G++ Q+ R +++   K G +  MV
Sbjct: 266 AEP--PNAIIFCNTRDDTALVTAVLNRNGFDAELLNGDLPQKERERVMGKVKRGEVAFMV 323

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + +V N+ +P     Y+HR+GRTGR G  G A  L +  ++     +
Sbjct: 324 ATDIAARGIDISGLEYVINYSLPEDPAVYLHRVGRTGRIGNKGTAINLFSGRELATYTTL 383

Query: 361 EK 362
           EK
Sbjct: 384 EK 385


>gi|221502154|gb|EEE27898.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 479

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 135/375 (36%), Positives = 209/375 (55%), Gaps = 13/375 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL  ++  +V   G+  PT IQ + +P  LQ  D+  +A+TG+GKTA+F LP   I
Sbjct: 53  FASLGLCSELCASVSTLGWKSPTAIQSEVLPYALQGRDIIALAETGSGKTAAFGLP---I 109

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++   R +    LIL PTREL  Q++      G    +TV  L+GG+    Q   L + 
Sbjct: 110 LQRLLQRTQRFYALILAPTRELCLQISQQILAMGGTLGVTVVTLVGGLDHNTQAIALAKK 169

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLV--PFTRQ 179
             V++ +PGR++DH  + K   + ++++LV+DEADR+L + F   +Q +   V  P  RQ
Sbjct: 170 PHVVVGSPGRVVDHLQQTKGFSLKSVKVLVLDEADRLLSLDFDAALQVLLEHVGSPAERQ 229

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQ 237
           T+LFSATMT ++ K+ +  L+ P ++EVN+    A  ++  F  V    +++   A L  
Sbjct: 230 TMLFSATMTTKVSKLQKASLKKPVKLEVNSKYDVASHLQQHFLLVPFKLKHTHLAAALLH 289

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L  S     + I+F N   N       L   GF    +HG + Q  R+  L+ F+     
Sbjct: 290 LSPS-----SVIVFTNTCANARKTALFLRHLGFQSVCLHGKMTQPQRIGALTKFRAAETS 344

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+++ +RGLDIP V  V NFDVP  ++ YIHR+GRT RAGR G+A T+V + D++  
Sbjct: 345 CLVATEVGSRGLDIPHVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALTIVTQYDVEAY 404

Query: 358 DAIEKLIEKKVDWLN 372
             IE  + +K++ L 
Sbjct: 405 QRIEHALGQKLEELT 419


>gi|237845351|ref|XP_002371973.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|61676032|gb|AAX51681.1| DEAD box RNA helicase [Toxoplasma gondii]
 gi|211969637|gb|EEB04833.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
          Length = 479

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 135/375 (36%), Positives = 209/375 (55%), Gaps = 13/375 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL  ++  +V   G+  PT IQ + +P  LQ  D+  +A+TG+GKTA+F LP   I
Sbjct: 53  FASLGLCSELCASVSTLGWKSPTAIQSEVLPYALQGRDIIALAETGSGKTAAFGLP---I 109

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++   R +    LIL PTREL  Q++      G    +TV  L+GG+    Q   L + 
Sbjct: 110 LQRLLQRTQRFYALILAPTRELCLQISQQILAMGGTLGVTVVTLVGGLDHNTQAIALAKK 169

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLV--PFTRQ 179
             V++ +PGR++DH  + K   + ++++LV+DEADR+L + F   +Q +   V  P  RQ
Sbjct: 170 PHVVVGSPGRVVDHLQQTKGFSLKSVKVLVLDEADRLLSLDFDAALQVLLEHVGSPAERQ 229

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQ 237
           T+LFSATMT ++ K+ +  L+ P ++EVN+    A  ++  F  V    +++   A L  
Sbjct: 230 TMLFSATMTTKVSKLQKASLKKPVKLEVNSKYDVASHLQQHFLLVPFKLKHTHLAAALLH 289

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L  S     + I+F N   N       L   GF    +HG + Q  R+  L+ F+     
Sbjct: 290 LSPS-----SVIVFTNTCANARKTALFLRHLGFQSVCLHGKMTQPQRIGALTKFRAAETS 344

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+++ +RGLDIP V  V NFDVP  ++ YIHR+GRT RAGR G+A T+V + D++  
Sbjct: 345 CLVATEVGSRGLDIPHVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALTIVTQYDVEAY 404

Query: 358 DAIEKLIEKKVDWLN 372
             IE  + +K++ L 
Sbjct: 405 QRIEHALGQKLEELT 419


>gi|169773397|ref|XP_001821167.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Aspergillus
           oryzae RIB40]
 gi|91207407|sp|Q2UH00|PRP28_ASPOR RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|83769028|dbj|BAE59165.1| unnamed protein product [Aspergillus oryzae]
          Length = 803

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 135/424 (31%), Positives = 222/424 (52%), Gaps = 39/424 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + GL  +++  V   GY +PTPIQ   IP+ +Q  D+ G+A TG+GKTASF+LP+L  
Sbjct: 369 WDESGLPKRLMELVNKVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTASFLLPLLVY 428

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +       E    +   P  ++L PTRELA Q+    +K+ +     V  ++GG  FE Q
Sbjct: 429 IAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEEQ 488

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +P
Sbjct: 489 AYSLRNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALP 548

Query: 176 FT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
            +                         RQT++++ATM   +++++  +L+ P  + + + 
Sbjct: 549 VSNEKPDSEEAENSMAMSQHIGTKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSA 608

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               +T+E   V   A   K+   L  +L S +     I+F N K+N   +   +++ GF
Sbjct: 609 GEAVDTVEQR-VEFIAGEDKRKKRLGDILSSGEFRPPIIVFVNIKRNCDAIAREIKQWGF 667

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y 
Sbjct: 668 SSVTLHGSKTQEQREAALASVRNGQTDVLVATDLAGRGIDVPDVSLVINFNMATTIESYT 727

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A T +  ED   +  ++++I      +   +S L   L K + AQ 
Sbjct: 728 HRIGRTGRAGKSGVAITFLGNEDTDVMYDLKQMI------MKSSISRLPEELRKHEAAQS 781

Query: 391 NHAR 394
              R
Sbjct: 782 KPTR 785


>gi|73620773|sp|Q4R3Q1|IF4A3_MACFA RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|67971846|dbj|BAE02265.1| unnamed protein product [Macaca fascicularis]
          Length = 411

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 208/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 40  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL P RELA Q+       G   N+     IGG       +KL+ G
Sbjct: 100 LD---IQVRETQALILAPARELAVQIQKGLLTLGDYMNVQCHACIGGTNVGEDIRKLDYG 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 157 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 217 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 275

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 276 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 331

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 332 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 391

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 392 IEQYYSTQIDEMPMNVADL 410


>gi|261189897|ref|XP_002621359.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis SLH14081]
 gi|239591595|gb|EEQ74176.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis SLH14081]
          Length = 834

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 137/361 (37%), Positives = 200/361 (55%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L  
Sbjct: 313 FQAFSLSRPILRGLTSVGFTTPTPIQQKTIPVALLGKDVVGGAVTGSGKTGAFIIPILER 372

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++ 
Sbjct: 373 LLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKR 432

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 433 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTM 492

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMT+ + K+    L  P R+ V+    T  T+   FV     +  K+   L  L +
Sbjct: 493 LFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLVQEFVRLRPGREDKRLGYLMVLCK 552

Query: 241 S--QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +D +   IIF   KK    +       G     +HG++ Q  R+K + +F++G +  
Sbjct: 553 TIYKDRV---IIFFRAKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVESFRDGKVSF 609

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A TL A+ D K + 
Sbjct: 610 LLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVK 669

Query: 359 A 359
           A
Sbjct: 670 A 670


>gi|209878704|ref|XP_002140793.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209556399|gb|EEA06444.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 562

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 140/396 (35%), Positives = 215/396 (54%), Gaps = 20/396 (5%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILEKGRARV 70
           ++ A+  AG+ +PT IQ++  P+ L   D+ GIA+TG+GKT  F+LP M+ I  + R R 
Sbjct: 158 LIDALYRAGFTEPTAIQVQGWPVALSGRDMIGIAETGSGKTLGFLLPSMVHISAQPRLRY 217

Query: 71  -RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  LIL PTREL  Q+ +   ++G    +    + GG+P  +Q   L  G ++ I  
Sbjct: 218 GDGPICLILAPTRELVEQIREQANRFGNILRIRNTAVYGGVPKRSQQISLRNGVEICIAC 277

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGR++D    G   ++ +  LV+DEADRMLDMGF P I+ + S +   RQTLL+SAT   
Sbjct: 278 PGRLIDFLEEGCTNLSRVTYLVLDEADRMLDMGFEPQIRKLVSQIRPDRQTLLWSATWPK 337

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHC---FVATYAQYSKKCAL---LQQLLQSQD 243
           E+QK++ +  +  + + +N  S       H    ++    +Y KK  L   L Q++ S  
Sbjct: 338 EVQKLARDLCRE-EPVHINVGSIDTLKASHNIKQYIDVVDEYQKKGRLRMFLNQVMNSPT 396

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
           +    +IFC  KK    L   L  +G+    IHG+  Q  R  +L+ F+ GT  +M+A+D
Sbjct: 397 SKV--LIFCETKKGADILTRELRLEGWPALCIHGDKKQEERTWVLNEFRNGTSPIMIATD 454

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI-DAIEK 362
           +AARGLD+ D+  V N+D PN+ E+YIHRIGRTGRAG  G + +    +  +   D +  
Sbjct: 455 VAARGLDVKDITFVVNYDFPNQMEDYIHRIGRTGRAGASGVSLSFFTADKCRLANDLVRV 514

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           L E K D        + P L K+  + +   ++  P
Sbjct: 515 LREAKQD--------IPPELTKLGTSHYKVNQRGGP 542


>gi|239612877|gb|EEQ89864.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis ER-3]
          Length = 834

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 137/361 (37%), Positives = 200/361 (55%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L  
Sbjct: 313 FQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILER 372

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++ 
Sbjct: 373 LLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKR 432

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 433 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTM 492

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMT+ + K+    L  P R+ V+    T  T+   FV     +  K+   L  L +
Sbjct: 493 LFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLVQEFVRLRPGREDKRLGYLMVLCK 552

Query: 241 S--QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +D +   IIF   KK    +       G     +HG++ Q  R+K + +F++G +  
Sbjct: 553 TIYKDRV---IIFFRAKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVESFRDGKVSF 609

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A TL A+ D K + 
Sbjct: 610 LLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVK 669

Query: 359 A 359
           A
Sbjct: 670 A 670


>gi|225717006|gb|ACO14349.1| Eukaryotic initiation factor 4A-III [Esox lucius]
          Length = 406

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 208/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 35  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQC 94

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 95  LD---IQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 151

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q  L
Sbjct: 152 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCL 211

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 212 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 270

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 271 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 326

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 327 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 386

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 387 IEQYYSTQIDEMPMNVADL 405


>gi|330915742|ref|XP_003297149.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
 gi|311330325|gb|EFQ94748.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
          Length = 805

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 137/361 (37%), Positives = 199/361 (55%), Gaps = 15/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  ++  +   G+ +PTPIQ K +P+ +Q  DV G A+TG+GKTA+F++P+L  
Sbjct: 277 FQAMSLSRPILRGLASVGFTEPTPIQNKAVPIAMQGKDVVGGAETGSGKTAAFLIPILER 336

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  I  PTRELA Q  +   K     ++T AL+ GG     Q   L+  
Sbjct: 337 LLYRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSTRDQEAVLKTR 396

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     + ++EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 397 PDVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFESQLNEILTTIPKSRQTM 456

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-TYAQYSKKCALLQQLLQ 240
           LFSATMT  + K+    +  P R+ V+    T   +   FV     +  K+ A L  + +
Sbjct: 457 LFSATMTSSVDKLIRIGMDKPVRLMVDAKKHTVAGLTQEFVRLRQGKEDKRLAYLMYICE 516

Query: 241 SQDTMKNGIIFCNQKKN------VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
              T K  I+F  QKK       V  LC      G     +HGN+ Q  R++ +  F+ G
Sbjct: 517 KIYTEKV-IVFFRQKKEAHRVRVVFALC------GLKASELHGNMSQEQRIQSVEAFRSG 569

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
               ++A+D+A+RGLDI +V  V N++ P   E Y+HR+GRT RAGR G+A TL A+ D 
Sbjct: 570 KSAYLLATDVASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDR 629

Query: 355 K 355
           K
Sbjct: 630 K 630


>gi|294929941|ref|XP_002779431.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239888539|gb|EER11226.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 863

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 135/366 (36%), Positives = 203/366 (55%), Gaps = 28/366 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  +  A+   GY +PTPIQ K IP++L   DV  +A+TG+GKTA+FV+PM+  
Sbjct: 25  FQTMGLSDPLFKAIQKMGYNQPTPIQRKAIPVILGGSDVVAMARTGSGKTAAFVIPMIQT 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L KG + V   R +IL PTRELA Q        GK  +L + L++GG   E+Q  +L   
Sbjct: 85  L-KGHSEVVGARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVGGHSMESQFDRLSSN 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLICTPGR++ H     L +  ++ +V DEADR+ +MGF   +Q I    P +RQ LL
Sbjct: 144 PDVLICTPGRLVHHMVEADLSLQRVQYIVFDEADRLFEMGFSDDMQTILKATPPSRQCLL 203

Query: 183 FSATMTDELQKVSENFLQNPKR--IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           FSAT+  +L + S   L++     I ++   + ++T++  F+ T A  SK  AL+  LL+
Sbjct: 204 FSATLPSQLTQFSRAGLRSDSTEFIRLDVEHTISDTLDLWFLYTTAD-SKPAALI-SLLR 261

Query: 241 SQDTMKNG-----------------------IIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
              +M N                        I+F   + NV      L + G +   I+G
Sbjct: 262 KLQSMGNANADSSTAVVAAGKGGKKAWSPKTIVFVATRHNVEFFASLLTQVGITNAPIYG 321

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++DQ  R   LS F+ G   +++ +D+AARG+DIP + +V N+D P+ ++ ++HR GRT 
Sbjct: 322 SMDQTQRTSSLSKFRSGKASVLLVTDVAARGIDIPQLDYVINYDFPSSSKLFVHRCGRTA 381

Query: 338 RAGRHG 343
           RAG  G
Sbjct: 382 RAGAKG 387


>gi|268565781|ref|XP_002639546.1| C. briggsae CBR-VBH-1 protein [Caenorhabditis briggsae]
          Length = 638

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 139/365 (38%), Positives = 204/365 (55%), Gaps = 21/365 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D G  P V+  V  +GY KPTP+Q  +IP +L   D+   AQTG+GKTA+F+LP++ 
Sbjct: 125 NFSDAGFGPAVMENVTRSGYTKPTPVQKHSIPTLLFNRDLMSCAQTGSGKTAAFLLPIIQ 184

Query: 62  -------------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
                            GR R   P  L+L PTRELA Q+     K+    NL  A+L G
Sbjct: 185 HIMAGGPDMIKTPTFNNGR-RTYYPSALVLSPTRELAIQIHKEAAKFSYKTNLQTAILYG 243

Query: 109 GIP-FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           G   +  Q  +L  G  +LI TPGR++D   +G + ++    LV+DEADRMLDMGF P I
Sbjct: 244 GRENYRDQVNRLRSGVHILIATPGRLIDIIEQGFIGLSGCRYLVLDEADRMLDMGFEPQI 303

Query: 168 QNITS--LVPFT-RQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVA 223
           + I    + P T R T +FSAT   E+Q ++++FL +N   + V    ST+E IE   + 
Sbjct: 304 RKIVGQGMPPKTARTTAMFSATFPKEIQLLAKDFLKENYVFLAVGRVGSTSENIEQRLL- 362

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            +    +K   L  +L ++D     ++F   K+    L + L +Q     +IHG++ Q  
Sbjct: 363 -WVNEMEKRQNLMDILMNEDATNLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIE 421

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P  ++ Y+HRIGRTGR G  G
Sbjct: 422 RERNLEMFRSGQFPILVATAVAARGLDIPNVRHVVNYDLPGDSDEYVHRIGRTGRCGNLG 481

Query: 344 KAFTL 348
            A + 
Sbjct: 482 IATSF 486


>gi|145352838|ref|XP_001420742.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580977|gb|ABO99035.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 413

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 138/359 (38%), Positives = 208/359 (57%), Gaps = 18/359 (5%)

Query: 1   MDFADLGLSPK-VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP- 58
           M+F D G  PK ++ AV  AGY +PT IQ ++ P+ LQ +D+  +A+TG+GKT +F+ P 
Sbjct: 2   MNF-DAGPWPKPLLDAVKRAGYTEPTAIQSQSWPIALQGYDMISVAKTGSGKTVAFLFPG 60

Query: 59  MLTILEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           ++ I E+G  R  R P  L L PTRELA Q+ +   K+G +  +    L GG P   Q +
Sbjct: 61  LMHIAERGNGRNARGPMMLALAPTRELATQIQEECMKFGSSCGVGSVCLYGGAPKGRQLQ 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L     + I TPGR+ D      + M++   +V+DEADRMLDMGF P I+ I   VP  
Sbjct: 121 QLRNRPQICIATPGRLNDLLESRMVDMSSATYVVLDEADRMLDMGFEPQIRKILQHVPVD 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS------STAETIEHCFVATYAQYSKK 231
           RQTL F+AT    + +V+   L NP ++ +             +TIE C  + + +  + 
Sbjct: 181 RQTLFFTATWPKAVIRVATAILTNPIQVNIGDTDQLVANKDITQTIEVC--SGFEKEKRL 238

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ-GFSVCAIHGNIDQRSRMKILSN 290
             +L    +  D +K  ++FC+ K+    +C  L +  G     IHG+ +QR R  IL+ 
Sbjct: 239 MEILNNPPEGCDPLK-ALVFCSTKR----MCDQLGRSVGNLAGIIHGDKEQRERDWILNQ 293

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           F++G   ++VA+D+AARGLD+ D   V N+D PN+ E+Y+HRIGRTGRAG+ G AF+ +
Sbjct: 294 FRQGRTPVLVATDVAARGLDVKDCNLVINYDFPNQIEDYVHRIGRTGRAGKKGWAFSFI 352


>gi|114773657|ref|ZP_01450692.1| Superfamily II DNA and RNA helicase [alpha proteobacterium
           HTCC2255]
 gi|114546127|gb|EAU49044.1| Superfamily II DNA and RNA helicase [alpha proteobacterium
           HTCC2255]
          Length = 457

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 207/361 (57%), Gaps = 8/361 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA   L P+++ +V + GY   T IQ  T+P+VL+  DV   A+TG+GKTA+F L +L 
Sbjct: 3   DFAAQNLRPELLQSVEELGYTHLTDIQAATLPVVLKGEDVLAQAKTGSGKTAAFGLGILQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+  R        L+L PTRELA QVA+      +   N+ +  L GG+P   Q   L+
Sbjct: 63  SLDATRT---YTHALVLCPTRELADQVAEQLRLLARRMDNVKITTLYGGVPMNGQIATLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR++DH  + ++ +  ++  V+DEADRMLDMGF   ++ I   +P  RQT
Sbjct: 120 HRPHIIVGTPGRVMDHLMKHRVHLKELQQFVLDEADRMLDMGFYDELEVIFQHLPQKRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D + ++S+   + P+RIE  +  +  +  +  +  T     +  A +    Q
Sbjct: 180 LLFSATYPDTIAQISDAVQKAPQRIETQSLHTGTKIEQIAYKVTDEHRDQAVAAVLSHYQ 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +Q      I+FC+ K     L   L+++  +  A++G+++QR R ++L+ F   +  ++V
Sbjct: 240 AQ----AAIVFCHTKAQTFALTEYLQQKDIAAVALNGDLEQRERTQVLTRFAHKSALVLV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V N+ V    + Y+HRIGRTGRA   G A TLV++ ++  + AI
Sbjct: 296 ATDVAARGLDIDAVDVVINYTVTEEPDVYVHRIGRTGRADAEGLAVTLVSESEMAGLRAI 355

Query: 361 E 361
           E
Sbjct: 356 E 356


>gi|332528278|ref|ZP_08404283.1| DEAD/DEAH box helicase domain-containing protein [Hylemonella
           gracilis ATCC 19624]
 gi|332042298|gb|EGI78619.1| DEAD/DEAH box helicase domain-containing protein [Hylemonella
           gracilis ATCC 19624]
          Length = 570

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 144/412 (34%), Positives = 225/412 (54%), Gaps = 57/412 (13%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHD--------VCGIAQTGTGKTAS 54
           F +LGL+P+++ AV D GY +PT +Q + IPL L  HD        +   +QTG+GKTA+
Sbjct: 31  FVELGLAPELIQAVADLGYTQPTAVQQRVIPLALPTHDPSHHGYNDLMVSSQTGSGKTAA 90

Query: 55  FVLPMLTIL-------------EKGRA--------------------------RVRMPRT 75
           F+LP+L  L             E  RA                          +  +P  
Sbjct: 91  FLLPVLHTLIQQQADAANREREEYERACADAAAKGEPAPKRHKRKDPTNPRNFKAAVPGA 150

Query: 76  LILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
           L+L PTRELA QVA D  E       L +A ++GG+P++ Q  KL+  A +++ TPGR+L
Sbjct: 151 LVLCPTRELAQQVAHDAIELVKHCRGLRIANVVGGMPYQLQIAKLQN-AGLVVATPGRLL 209

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D     ++ ++ ++ LV+DEADRMLD+GF   +  I +L    RQT++FSAT    +Q++
Sbjct: 210 DLQRSMQIKLDQVQFLVVDEADRMLDLGFTDDLAEINALTANRRQTMMFSATFAPRIQQL 269

Query: 195 SENFLQNP----KRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQLLQSQDTMKNGI 249
           +   + +     K+++++ P      I+   V  +A  ++ K ALL   L+  + +   I
Sbjct: 270 AMRVMHDNGSQVKKVQIDAPHEKHANIKQ--VLHWADNFAHKRALLDHWLRDAN-IDQAI 326

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           +F + +     L   L++ GF+  A+HG + Q  R + L   + G ++ +VA+D+AARG+
Sbjct: 327 VFASTQVECDGLAADLQQAGFAAVALHGALSQGLRNRRLMALRSGQVKFLVATDVAARGI 386

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           D+P + HVFNF +P +AE+Y HRIGRTGRAGR G A T+    D + I  IE
Sbjct: 387 DVPTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGIAVTIAEFRDRRKIGDIE 438


>gi|2580554|gb|AAC51831.1| dead box, Y isoform [Homo sapiens]
 gi|2580556|gb|AAC51832.1| dead box, Y isoform [Homo sapiens]
          Length = 660

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 139/393 (35%), Positives = 221/393 (56%), Gaps = 25/393 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D+ +   ++  +    Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+
Sbjct: 179 NFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLVACAQTGSGKTAAFLLPILS 238

Query: 62  -------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 239 QIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 298

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 299 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 358

Query: 167 IQNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 359 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 418

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             + +   K + L  +L +  +    ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 419 --WVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 476

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 477 DREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNL 536

Query: 343 GKAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
           G A +   ++++    D ++ L+E K +   WL
Sbjct: 537 GLATSFFNEKNMNITKDLLDLLVEAKQEVPSWL 569


>gi|332091754|gb|EGI96834.1| ATP-independent RNA helicase dbpA [Shigella boydii 5216-82]
          Length = 457

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 136/377 (36%), Positives = 217/377 (57%), Gaps = 8/377 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG  F  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQLFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN +K+   +C +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTQKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSTRVLVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362

Query: 367 KVDWLNGDLSSLNPPLE 383
            ++W    ++S   PLE
Sbjct: 363 TLNWQTPPVNSSIVPLE 379


>gi|302879765|ref|YP_003848329.1| DEAD/DEAH box helicase domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302582554|gb|ADL56565.1| DEAD/DEAH box helicase domain protein [Gallionella
           capsiferriformans ES-2]
          Length = 484

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 135/392 (34%), Positives = 219/392 (55%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LSP ++  +   GY+  TPIQ +++P+ L  +D+   A+TG+GKTA+F LP+LT 
Sbjct: 31  FNELPLSPGLLSTLQQLGYLTMTPIQAESLPITLAGNDLIAQAKTGSGKTAAFALPLLTR 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L   R  ++    ++L PTRELA QV     +  ++  N+ +  L GG     Q   LE 
Sbjct: 91  LNPRRFAIQ---AMVLCPTRELADQVTQEIRRLARSEDNIKILTLCGGSTMRPQIASLEH 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +R  L ++ +  LV+DEADRMLDMGF   +  +    P  RQTL
Sbjct: 148 GAHIVVGTPGRIMDHLDRNTLELSALNTLVLDEADRMLDMGFYDSLAYVVKHCPKDRQTL 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT  D + +++  F++ P+++++      ++  +  +  +     ++ A +  LL+ 
Sbjct: 208 MFSATYPDGVMRLARQFMRQPQQVKLEEQHEESKIRQRFYEVS---NEERLAAVGTLLRH 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   + FCN K+   +L   L  QG     ++G+++QR R ++L  F   +  ++VA
Sbjct: 265 YRPVST-LAFCNTKQQCRSLLEVLHAQGIVALTLNGDMEQRDRDQVLIQFANRSCSVLVA 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRAG  G A +LV   +   + +I 
Sbjct: 324 TDVAARGLDITQLEAVINVDVTPDPEVHVHRIGRTGRAGEDGWALSLVGPTERHRVISIA 383

Query: 362 KLIEKKVDW------LNGDLSSLNPPLEKIDI 387
           KL     +W       + D + L PP+  + I
Sbjct: 384 KLSGNVPEWHEIAELKDEDEAPLVPPMVTLQI 415


>gi|241763727|ref|ZP_04761775.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
 gi|241367032|gb|EER61417.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
          Length = 612

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 145/411 (35%), Positives = 228/411 (55%), Gaps = 56/411 (13%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHD-------VCGIAQTGTGKTASF 55
           F +LGL+P++V AV D GY +PT +Q+K IPL +   D       +   +QTG+GKTA+F
Sbjct: 42  FIELGLAPELVQAVADLGYTQPTSVQLKAIPLAMGAGDDAKRFIDLMVSSQTGSGKTAAF 101

Query: 56  VLPML-TILEK----------------GRARVR----------------------MPRTL 76
           +LP+L T++++                  A VR                       P  L
Sbjct: 102 LLPVLHTLIQQQAEAEAEERAAFERAVAEAAVRGEPAPKRAKRKDPTNARNFKAATPGAL 161

Query: 77  ILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           IL PTRELA QVA D  +       L VA ++GG+P++ Q  KL+  A++++ TPGR+LD
Sbjct: 162 ILCPTRELAQQVAHDAIDLVKHCRGLRVANVVGGMPYQLQIAKLQN-ANLVVATPGRLLD 220

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
                ++ ++ ++ LV+DEADRMLD+GF   +  +  L    +QT++FSAT    +Q+++
Sbjct: 221 LQRSMQIKLDKVQFLVVDEADRMLDLGFSDDLAELNQLTSQRKQTMMFSATFAPRIQQLA 280

Query: 196 ENFLQNP----KRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQSQDTMKNGII 250
              + +     +++ +++P      I+   + A  AQ+ +K  LL   L+   T+   I+
Sbjct: 281 MRVMHDGGASVQKVTIDSPQEKHANIKQMLYWADNAQHKRK--LLDHWLRDT-TINQAIV 337

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F + +     L + L++ GFS  A+HG + Q  R + L   + G +Q++VA+D+AARG+D
Sbjct: 338 FASTQVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRAGQVQILVATDVAARGID 397

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +P + HVFNF +P +AE+Y HRIGRTGRAGR G A T     D + I  IE
Sbjct: 398 VPTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAITFAEFRDRRKIYDIE 448


>gi|68487950|ref|XP_712192.1| hypothetical protein CaO19.13973 [Candida albicans SC5314]
 gi|68488947|ref|XP_711718.1| hypothetical protein CaO19.6652 [Candida albicans SC5314]
 gi|74656119|sp|Q59PR3|DBP8_CANAL RecName: Full=ATP-dependent RNA helicase DBP8
 gi|46433039|gb|EAK92496.1| hypothetical protein CaO19.6652 [Candida albicans SC5314]
 gi|46433563|gb|EAK92999.1| hypothetical protein CaO19.13973 [Candida albicans SC5314]
 gi|238880002|gb|EEQ43640.1| hypothetical protein CAWG_01884 [Candida albicans WO-1]
          Length = 440

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 155/428 (36%), Positives = 240/428 (56%), Gaps = 29/428 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYV-KPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M F DLG++ K +   LDA  +  PT IQ   IP +L+ HD  G A+TG+GKT +F  PM
Sbjct: 1   MSFNDLGVA-KWLSESLDAMKIYTPTAIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPM 59

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           LT   +    +     LIL PTRELA Q+A+ F   G N N+ VA+++GG  F  Q   L
Sbjct: 60  LTQWSEDPFGIF---GLILTPTRELALQIAEQFAALGANMNIKVAVVVGGEDFVQQTLAL 116

Query: 120 ERGADVLICTPGRILDH-FNRGKLLMNN---IEILVIDEADRMLDMGFIPYIQNITSLVP 175
           +R    +I TPGR+ DH  N G+  ++    ++ LV+DEADR+L   F   +Q    ++P
Sbjct: 117 QRKPHFVIATPGRLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFDVLP 176

Query: 176 FT--RQTLLFSATMTDELQKVSEN---------FLQNPKRIE-VNTPSSTAETIEHCFVA 223
            +  RQTLLF+AT+TD ++ + E          F+   + ++ V  PS+    I + FV 
Sbjct: 177 TSDKRQTLLFTATITDAVRALKEKPPTPGKPPVFMHEVETVDKVAIPSTL--QISYVFVP 234

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
           +Y + +   ++L  L Q +D+    +IF N+      L   L K  F V ++H  + Q  
Sbjct: 235 SYVKEAYLNSILH-LEQFKDS--TAVIFVNRTTTAEVLRRMLRKLDFRVASLHSEMPQSE 291

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L  FK G  ++++A+D+A+RGLDIP V  V NFD+P   +++IHR+GRT RAGR G
Sbjct: 292 RTNSLHRFKAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKG 351

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
            A +++ ++DI  I +IE+ I KK++ L  D++  N  + K  ++  + A++ + +    
Sbjct: 352 DAVSIIGEKDIDRIQSIEERINKKMELLE-DVNDDN--VIKESLSATSVAKRESLMEMDK 408

Query: 404 TGFDRRKK 411
             F  RKK
Sbjct: 409 ENFGERKK 416


>gi|42522912|ref|NP_968292.1| ATP-dependent RNA helicase DbpA [Bdellovibrio bacteriovorus HD100]
 gi|39574108|emb|CAE79285.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 505

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 136/367 (37%), Positives = 218/367 (59%), Gaps = 9/367 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ L LSP+++  V + G+   TPIQ ++IPL+L   D+ G A+TG+GKTA+F LP   
Sbjct: 48  EFSTLPLSPELLTVVQELGFETLTPIQQESIPLLLAGKDIIGQAKTGSGKTAAFSLP--- 104

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           IL K      + + LIL PTRELA+QV     K G+    L V  + GG     Q   LE
Sbjct: 105 ILNKINLDQPLLQALILCPTRELASQVVTEIRKLGRRLPGLKVLAMTGGQSGREQADALE 164

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGR+ D   R ++ ++ ++ +V+DEAD+MLDMGF   I+ +   +P +RQT
Sbjct: 165 NGVQIVVGTPGRLADFVGRNRIDLSAVKTVVLDEADKMLDMGFADEIKTVMRDLPGSRQT 224

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT  + ++ +S  + ++ +++ +         IE   +   ++ + K  +L ++LQ
Sbjct: 225 VLFSATFPESIEHLSRKYQRHAQQVIIE--DEEQNLIEQ--LVYDSEDNDKTNVLMRILQ 280

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q    + IIFCN K  V  +   L   G +   +HG+++QR R ++++ F+ G+ +++V
Sbjct: 281 -QHPSDSTIIFCNTKNAVAEIAERLNDLGAASGCLHGDMEQRERDRVMAMFRNGSHRILV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V NFD+P   E Y+HRIGRTGRAG+ G A T+   +D   +   
Sbjct: 340 ATDVAARGLDIDNLELVINFDLPLSPEIYVHRIGRTGRAGKTGVAVTIAHPKDTLKLGQF 399

Query: 361 EKLIEKK 367
           E+L   K
Sbjct: 400 EELTGGK 406


>gi|327352045|gb|EGE80902.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis ATCC 18188]
          Length = 834

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 137/361 (37%), Positives = 200/361 (55%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L  
Sbjct: 313 FQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILER 372

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++ 
Sbjct: 373 LLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKR 432

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 433 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTM 492

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMT+ + K+    L  P R+ V+    T  T+   FV     +  K+   L  L +
Sbjct: 493 LFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLVQEFVRLRPGREDKRLGYLMVLCK 552

Query: 241 S--QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +D +   IIF   KK    +       G     +HG++ Q  R+K + +F++G +  
Sbjct: 553 TIYKDRV---IIFFRAKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVESFRDGKVSF 609

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A TL A+ D K + 
Sbjct: 610 LLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVK 669

Query: 359 A 359
           A
Sbjct: 670 A 670


>gi|222111864|ref|YP_002554128.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221731308|gb|ACM34128.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
          Length = 616

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 143/410 (34%), Positives = 225/410 (54%), Gaps = 55/410 (13%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGI------AQTGTGKTASFV 56
           F +LGL+P++V AV D GY +PT +Q + IPL +   D          +QTG+GKTA+F+
Sbjct: 39  FIELGLAPELVQAVADLGYTEPTQVQTRAIPLAMGSGDDASFIDLMVSSQTGSGKTAAFL 98

Query: 57  LPMLTILEKGRA---------------------------------------RVRMPRTLI 77
           LP+L  L + +A                                       +   P  L+
Sbjct: 99  LPVLHTLIRQQAEAEVAERAAFERAAAEAAARGEAPPKRPKRKNPTQARNFKAATPGALV 158

Query: 78  LEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           L PTRELA QVA D  +       L +A ++GG+P++ Q  KL+  A++++ TPGR+LD 
Sbjct: 159 LCPTRELAQQVAHDAIDLVKHCKGLRIANVVGGMPYQLQIAKLQN-ANLVVATPGRLLDL 217

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
               ++ ++ ++ LV+DEADRMLD+GF   +  I  L    +QT++FSAT    +Q+++ 
Sbjct: 218 QRSQQIKLDQVQFLVVDEADRMLDLGFSDDLAEINQLTAQRKQTMMFSATFAPRIQQLAM 277

Query: 197 NFLQNP----KRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
             + +     K+I+++TP      I+   + A  AQ+ +K  LL   L+   ++   I+F
Sbjct: 278 RVMHDNGASVKKIQIDTPQEKHANIKQMLYWADNAQHKRK--LLDHWLRDA-SIDQAIVF 334

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
            + +     L + L+++GFS  A+HG + Q  R + L   + G +Q++VA+D+AARG+D+
Sbjct: 335 ASTQVECDGLANDLQQEGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDV 394

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           P + HVFNF +P +AE+Y HRIGRTGRAGR G A T     D + I  IE
Sbjct: 395 PTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIE 444


>gi|115471651|ref|NP_001059424.1| Os07g0301200 [Oryza sativa Japonica Group]
 gi|75325214|sp|Q6YS30|RH5_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 5
 gi|34394349|dbj|BAC84904.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|113610960|dbj|BAF21338.1| Os07g0301200 [Oryza sativa Japonica Group]
          Length = 512

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 134/358 (37%), Positives = 201/358 (56%), Gaps = 10/358 (2%)

Query: 3   FADLGLSPKVV-CAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA   L P+V+ C     G+ +P+PIQ    P +L   D  GIA TG+GKT +F +P L 
Sbjct: 96  FAATALPPQVLDCC---KGFERPSPIQAYAWPYLLDGRDFIGIAATGSGKTIAFGVPALM 152

Query: 62  ILEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            + +      A+  +PR L+L PTRELA Q+AD   + G    ++   L GG     Q  
Sbjct: 153 HVRRKMGEKSAKKGVPRVLVLSPTRELAQQIADVLCEAGAPCGISSVCLYGGTSKGPQIS 212

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G D++I TPGR+ D    G   +N++  +V+DEADRMLDMGF P ++ I S     
Sbjct: 213 ALKSGVDIVIGTPGRMKDLIEMGICRLNDVSFVVLDEADRMLDMGFEPEVRAILSQTASV 272

Query: 178 RQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           RQT++FSAT    + ++++ F+  NP ++ + +    A       V      S+   L+ 
Sbjct: 273 RQTVMFSATWPPAVHQLAQEFMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRSRDSRLVA 332

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L +     +N + +F   K+    +   L+++G+S  ++HG+  Q  R K LS FKEG+
Sbjct: 333 LLDKYHKAQRNRVLVFVLYKREATRVETMLQRRGWSAVSVHGDKAQHDRTKALSLFKEGS 392

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             LM+A+D+A+RGLDIPDV  V N+  P   E+Y+HRIGRTGRAG+ G A T   +E+
Sbjct: 393 CPLMIATDVASRGLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTFFTQEN 450


>gi|311743785|ref|ZP_07717591.1| ATP-dependent RNA helicase DeaD [Aeromicrobium marinum DSM 15272]
 gi|311312915|gb|EFQ82826.1| ATP-dependent RNA helicase DeaD [Aeromicrobium marinum DSM 15272]
          Length = 470

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 134/355 (37%), Positives = 201/355 (56%), Gaps = 14/355 (3%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML--TIL---- 63
           P++  A+   G   P PIQ  T+ + L   D+ G A+TGTGKT +F +P++  T+     
Sbjct: 2   PEIADALTGHGIETPFPIQEMTLSVALMGTDLIGQARTGTGKTLAFAIPVIQRTVAPHDP 61

Query: 64  EKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGK---NYNLTVALLIGGIPFEAQNKKL 119
           E G  A    P+ LI+ PTRELA QVA +     K     NLT+    GG+P+E Q   L
Sbjct: 62  EYGELAAPGKPQALIIAPTRELAIQVAGDVAMASKLRGTRNLTI---YGGVPYEGQLDAL 118

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G D++I TPGRILD  NR  L +++++ +V+DEAD MLD+GF+P ++ I +  P  RQ
Sbjct: 119 ESGVDIVIGTPGRILDLANRRALDLSHVKSMVLDEADEMLDLGFLPDVEAILAKTPELRQ 178

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   +  ++   +++P  I   +   T            A    K  ++ ++L
Sbjct: 179 TMLFSATMPGAIVGLARKHMRHPMNIRAESSEDTQMVPATAQFVWQAHDMDKPEIVSRIL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q+ D  +  IIF   K+    +   L  +GF    +HG++ Q +R K L  F++G I  +
Sbjct: 239 QADDVARV-IIFTRTKRTAQRVADELVDRGFPASPLHGDMAQTAREKALQRFRDGKINTL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           VA+D+AARG+D+ ++ HV N++ P   + Y+HRIGRTGRAG  G A T V   D+
Sbjct: 298 VATDVAARGIDVANISHVINYNCPEDDKTYVHRIGRTGRAGASGIAVTFVDWADL 352


>gi|228471344|ref|ZP_04056145.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           uenonis 60-3]
 gi|228306845|gb|EEK15958.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           uenonis 60-3]
          Length = 553

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 132/366 (36%), Positives = 214/366 (58%), Gaps = 11/366 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIP-LVLQRHDVCGIAQTGTGKTASFVLPM 59
           M F  L LSP+++ A  D G+ +P P+Q + IP L   R D+  +++TG+GKTA++ LP+
Sbjct: 1   MTFDTLDLSPELLRATTDLGFSEPMPVQQEVIPYLSTHRGDLIALSKTGSGKTAAYGLPL 60

Query: 60  L--TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL-LIGGIPFEAQN 116
           L   I  KG A    P  LIL PTRELA QV  +     K  ++   L L GG   E Q 
Sbjct: 61  LERIIQAKGSA----PCGLILTPTRELAIQVQSDLVALAKYTSVRQILALYGGASIEEQI 116

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++L +G  +++ TPGR+ D   R  + +  + ++V+DEAD MLDMGF   +Q I   VP 
Sbjct: 117 RQLAKGYHIIVATPGRLCDLIRRKAVKLRKVSVVVLDEADVMLDMGFQRDLQEILQAVPQ 176

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             +  LFSATM+ E++++++N++ +   +++   +     I+H +VA  A++  K A L+
Sbjct: 177 QVEHWLFSATMSREVREIADNYISDAHEVQIGALNKANADIKHLYVAVPARH--KYAALK 234

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +++     +  GIIFC  +     +   L + G++  A+HG++ Q  R  +++ F+   +
Sbjct: 235 RVVDYYPNI-YGIIFCRTRAETKEIAEWLIRDGYNADALHGDLSQAQRDMVMNRFRIRNL 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           QL+VA+D+AARGLD+ DV HV ++ +P   ++Y HR GRT RAG+ G +  +    D K 
Sbjct: 294 QLLVATDVAARGLDVDDVTHVLHYGLPADPDSYTHRSGRTARAGKTGLSIAICHLRDSKQ 353

Query: 357 IDAIEK 362
           I  IE+
Sbjct: 354 IRIIEQ 359


>gi|326778321|ref|ZP_08237586.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|326658654|gb|EGE43500.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 753

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 127/347 (36%), Positives = 187/347 (53%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   +V  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L  
Sbjct: 79  FGDLGLPEGIVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLAA 138

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  GR   + PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LERG
Sbjct: 139 LAGGRTEKKKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERG 198

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVL+ TPGR+ D  NRG   + ++++ V+DEAD+M D+GF+P +  +   VP   Q +L
Sbjct: 199 VDVLVATPGRLRDIINRGACSLEDVQVAVLDEADQMSDLGFLPEVTELLDQVPAGGQRML 258

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E+  + + +L  P   EV++      T+ H  +    +   K  +   +   +
Sbjct: 259 FSATMENEIGTLVKRYLSTPVTHEVDSAQGNVTTMSHHVLVVKPK--DKAPVTAAIAARK 316

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L + G    A+HG + Q +R ++L +FK+G +  +VA+
Sbjct: 317 GRT---IIFVRTQLGADRIAEQLIESGVKADALHGGMTQGARTRVLEDFKKGYVNALVAT 373

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+ +  +  V N D     ++Y+HR GRT RAG+ G   +L 
Sbjct: 374 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGVVVSLA 420


>gi|310790963|gb|EFQ26496.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 1112

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 130/371 (35%), Positives = 214/371 (57%), Gaps = 8/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  GL+ + +  + D G+ KPT IQ++ +P+++   DV G+A+TG+GKT +F+LPM   
Sbjct: 491 WAQCGLTRRTLDVLADMGFDKPTSIQMQALPVIMSGRDVVGVAKTGSGKTLAFLLPMFRH 550

Query: 62  ILEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++   +    P  LI+ PTRELA Q+  + + + K   L      GG P   Q  +L+
Sbjct: 551 IMDQPPLKDTDGPIGLIMTPTRELAVQIHRDCKPFLKAMGLRSVCAYGGAPIREQIAELK 610

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N+G++  +  +   V+DEADRM DMGF P +  I + +   
Sbjct: 611 RGAEIVVCTPGRMIDLLAANQGRVTNLRRVTYAVLDEADRMFDMGFEPQVMKIFANIRPD 670

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCALL 235
           RQT+LFSATM   +  +++  L++P  I V   S  A  I      V    ++     LL
Sbjct: 671 RQTILFSATMPRIIDSLTKKVLKSPVEITVGGRSVVASDITQIVEIVPEDQKFYHLLGLL 730

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +L   +D     ++F  +++   +L   L  +G+   +IHG  DQ  R   +S+FK+G 
Sbjct: 731 GELYD-KDEDARSLVFVERQEKADDLLKELMTKGYPCMSIHGGKDQVDRDSTISDFKKGI 789

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + +++A+ +AARGLD+  +  V N+D P+ +E+Y+HR GRTGRAG  G A T + +E   
Sbjct: 790 VPILIATSVAARGLDVKQLKLVVNYDCPSHSEDYVHRCGRTGRAGNKGTAVTYITEEQES 849

Query: 356 HIDAIEKLIEK 366
              A+ K +E+
Sbjct: 850 CASAVAKALEQ 860


>gi|71995718|ref|NP_497615.2| hypothetical protein Y71H2AM.19 [Caenorhabditis elegans]
 gi|66275464|gb|AAY43989.1| Hypothetical protein Y71H2AM.19 [Caenorhabditis elegans]
          Length = 643

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 144/397 (36%), Positives = 220/397 (55%), Gaps = 31/397 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F+DL L   +   +  AGY +PTP+Q  +IP +    D+   AQTG+GKTA+F++P++  
Sbjct: 168 FSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPLVNA 227

Query: 61  -----------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                      ++   G  + + P  L+L PTREL+ Q+ +   K+     +T ALL GG
Sbjct: 228 ILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIFNESRKFAYRTPITSALLYGG 287

Query: 110 IP-FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
              ++ Q  KL  G  +LI TPGR++D  ++G + M     LV+DEADRMLDMGF P I+
Sbjct: 288 RENYKDQIHKLRLGCHILIATPGRLIDVMDQGLIGMEGCRYLVLDEADRMLDMGFEPQIR 347

Query: 169 NITSL--VPF--TRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVA 223
            I     +P    R T +FSAT   E+Q ++++FL +N   + V    ST+E I    V 
Sbjct: 348 QIVECNRMPSKEERITAMFSATFPKEIQLLAQDFLKENYVFLAVGRVGSTSENIMQKIV- 406

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + +  +K + L  LL +       ++F   K+   +L + L +Q + V  IHG++ Q  
Sbjct: 407 -WVEEDEKRSYLMDLLDATGDSSLTLVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQFE 465

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R K L  F+ GT  ++VA+ +AARGLDIP+V HV N+D+P+  + Y+HRIGRTGR G  G
Sbjct: 466 REKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVG 525

Query: 344 KAFTL-------VAKEDIKHIDAIEKLIEKKVDWLNG 373
            A +        +A+E    +D I +  ++  DWL G
Sbjct: 526 LATSFFNDKNRNIARE---LMDLIVEANQELPDWLEG 559


>gi|329575935|gb|EGG57456.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
           TX1467]
          Length = 457

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/323 (38%), Positives = 195/323 (60%), Gaps = 10/323 (3%)

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L K  A  R+ + L++ PTRELA Q  +   + G++  + V  + GG     Q + L+ 
Sbjct: 1   MLNKIDADNRVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKD 60

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH NR  L +  +E LV+DEAD ML+MGF+  I+ I S VP  RQTL
Sbjct: 61  RPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTL 120

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++ +   F++ P+ +++     TA+ I+  +V +  +  +K  ++ +LL  
Sbjct: 121 LFSATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRS--KDFEKFDIMTRLLDV 178

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++VA
Sbjct: 179 Q-TPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVA 237

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  IE
Sbjct: 238 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVIE 297

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
            L +K+       ++ L PP EK
Sbjct: 298 NLTKKR-------MTPLRPPTEK 313


>gi|300972035|ref|ZP_07171795.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|300309257|gb|EFJ63777.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|324011376|gb|EGB80595.1| DEAD/DEAH box helicase [Escherichia coli MS 60-1]
          Length = 432

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 130/347 (37%), Positives = 205/347 (59%), Gaps = 8/347 (2%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84
           TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   A +   +  +L PTREL
Sbjct: 2   TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID---ASLFQTQAFVLCPTREL 58

Query: 85  AAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           A QVA    +  +   N  +  L GG PF  Q   L+    +++ TPGR+LDH  +G + 
Sbjct: 59  ADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVS 118

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT  + +  +S    ++P 
Sbjct: 119 LDALNTLVMDEADRMLDMGFSDAIDDVICFAPASRQTLLFSATWPEAIAAISGRVQRDPL 178

Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
            IE+++ +     IE  F  T ++   K  LLQ+LL S     + ++FCN KK+  ++C 
Sbjct: 179 AIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPSSCVVFCNTKKDCQSVCD 234

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
           +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V NF++ 
Sbjct: 235 ALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELA 294

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
              E ++HRIGRT RAG  G A +  A E+ +  + I  +++ K++W
Sbjct: 295 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNW 341


>gi|332300603|ref|YP_004442524.1| DEAD/DEAH box helicase domain protein [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177666|gb|AEE13356.1| DEAD/DEAH box helicase domain protein [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 553

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 132/366 (36%), Positives = 214/366 (58%), Gaps = 11/366 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIP-LVLQRHDVCGIAQTGTGKTASFVLPM 59
           M F  L LSP+++ A  D G+ +P P+Q + IP L   R D+  +++TG+GKTA++ LP+
Sbjct: 1   MTFDTLDLSPELLRATSDLGFSEPMPVQQEVIPYLSSHRGDLIALSKTGSGKTAAYGLPL 60

Query: 60  L--TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL-LIGGIPFEAQN 116
           L   I  KG A    P  LIL PTRELA QV  +     K  ++   L L GG   E Q 
Sbjct: 61  LERIIQAKGSA----PCGLILTPTRELAIQVQSDLVALAKYTSVRQILALYGGASIEEQI 116

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++L +G  +++ TPGR+ D   R  + +  + ++V+DEAD MLDMGF   +Q I   VP 
Sbjct: 117 RQLAKGYHIIVATPGRLCDLLRRKAVKLRKVSVVVLDEADVMLDMGFQRDLQEILQAVPQ 176

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             +  LFSATM+ E++++++N++ +   +++   +     I+H +VA  A++  K A L+
Sbjct: 177 QVEHWLFSATMSREVREIADNYISDAHEVQIGALNKANADIKHLYVAVPARH--KYAALK 234

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +++     +  GIIFC  +     +   L + G++  A+HG++ Q  R  +++ F+   +
Sbjct: 235 RVVDYYPNI-YGIIFCRTRAETKEIAEWLIRDGYNADALHGDLSQAQRDMVMNRFRIRNL 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           QL+VA+D+AARGLD+ DV HV ++ +P   ++Y HR GRT RAG+ G +  +    D K 
Sbjct: 294 QLLVATDVAARGLDVDDVTHVLHYGLPADPDSYTHRSGRTARAGKTGLSIAICHLRDSKQ 353

Query: 357 IDAIEK 362
           I  IE+
Sbjct: 354 IRIIER 359


>gi|241767104|ref|ZP_04764875.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
 gi|241362321|gb|EER58319.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
          Length = 469

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 143/380 (37%), Positives = 210/380 (55%), Gaps = 10/380 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  L LSP  +  +   GY + TPIQ  ++P  L   D+   A TG+GKTA+F L +L 
Sbjct: 11  DFGALALSPAQLSNLQQLGYTRMTPIQAASLPPALLGKDLIAQASTGSGKTAAFALALLA 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120
            L   R  V+    L+L PTRELA QV     +  +   N+ V  L GG+P   Q   LE
Sbjct: 71  NLNPRRFAVQ---ALVLCPTRELADQVTAEIRRLARAEENIKVVTLCGGVPLRGQMLSLE 127

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR++DH  R  L +  +  LV+DEADRMLDMGF   I  +    P  RQT
Sbjct: 128 HGAHIVVGTPGRVMDHLERQHLTLEALNTLVLDEADRMLDMGFFDDIATVARQCPKERQT 187

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + + K+S  F++ P +I V    +  +  +  +     + S++   + QLL 
Sbjct: 188 LLFSATYPEGIAKLSAQFMKTPVQITVQAQHAEGKIEQRWY---EVKNSERLHAVSQLL- 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +    ++ I FCN K+   +L   L+ QGFS  A++G ++QR R ++L  F   +  ++V
Sbjct: 244 NHFRPESSIAFCNTKQQCRDLVAVLQAQGFSALALYGELEQRERDQVLVQFANKSCSVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V N DV    E +IHRIGRTGR    G A  L + +++  +  I
Sbjct: 304 ATDVAARGLDIANLAAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLASMDEMGSVGKI 363

Query: 361 EKLIEKKVDWLNGDLSSLNP 380
           E+L  ++  W    L+ L P
Sbjct: 364 EQLQGRESRWC--PLAELTP 381


>gi|324505559|gb|ADY42388.1| ATP-dependent RNA helicase DDX3X [Ascaris suum]
          Length = 788

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 141/372 (37%), Positives = 209/372 (56%), Gaps = 29/372 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FADL L P +   +  +GY +PTP+Q  +IP ++   D+   AQTG+GKTA+F++P++  
Sbjct: 287 FADLKLHPWIEENIKLSGYGRPTPVQKYSIPTLMNNRDLMSCAQTGSGKTAAFLVPLINN 346

Query: 61  ------------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
                       T  + GR R + P  LIL PTREL+ Q+ +   K+     +T ALL G
Sbjct: 347 VLQNGPEALYRSTTQQNGR-RKQYPAALILSPTRELSLQIYNESRKFAYRTPITSALLYG 405

Query: 109 GIP-FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           G   +  Q  KL  G  +LI TPGR++D   +G + ++    LV+DEADRMLDMGF P I
Sbjct: 406 GRENYREQINKLRLGVHILIATPGRLIDVMEQGYIGLDGCRFLVLDEADRMLDMGFEPQI 465

Query: 168 QNITSLVPFT----RQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFV 222
           + I  L        R T +FSAT   E+Q ++++FL  N   + V    ST+E I    V
Sbjct: 466 RQIVDLSEMPPKGKRVTAMFSATFPKEIQVLAQDFLMPNYVFLAVGRVGSTSENIMQKIV 525

Query: 223 ATYAQYSKKCALLQQLLQS------QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
             + +  +K + L  LL +       +     ++F   K+   +L + L+K G++V AIH
Sbjct: 526 --WVEEHEKKSFLMDLLDAGVKVAYSEPTALTLVFVETKRGASDLAYYLQKDGYNVVAIH 583

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G++ Q  R K L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P+  + Y+HRIGRT
Sbjct: 584 GDLKQFEREKHLETFRSGVAPILVATAVAARGLDIPNVKHVINYDLPSDIDEYVHRIGRT 643

Query: 337 GRAGRHGKAFTL 348
           GR G  G A + 
Sbjct: 644 GRVGNVGLATSF 655


>gi|298711460|emb|CBJ32599.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 848

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 144/399 (36%), Positives = 217/399 (54%), Gaps = 17/399 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG++  +  A    G+   T IQ + +PL  +  DV G+A+TG+GKT +F LP+L  
Sbjct: 408 FESLGVTGPLCEAAAQLGWTHATEIQRQALPLAFEGKDVIGLAETGSGKTGAFALPILQA 467

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +   R+     +I+ PTRELA Q+ +  E  G    L    ++GGI    Q+  L   
Sbjct: 468 LLENPQRLF---AVIMAPTRELAFQINEVMEALGVGIGLKTVCIVGGIDMFQQSVALALK 524

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             V+I TPGR++DH    K   +   + LV+DEADRML M F   I  + S++P  R+T 
Sbjct: 525 PHVVIATPGRLVDHLENTKGFSLRTAKYLVLDEADRMLGMDFEEEINKVLSVLPRERRTF 584

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL--L 239
           LFSATMT ++ K+    L+NP R+EV    ST +T+   ++   A++ K C L   L   
Sbjct: 585 LFSATMTSKVAKLQRASLKNPARVEVANKFSTPKTLVQQYLFIPAKH-KDCYLAYVLNEF 643

Query: 240 QSQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             Q T    I+F   CN  + V  L  +L   GF    +HG + Q  R+  L  FK G  
Sbjct: 644 AGQST----IVFVSTCNNAQRVALLLRNL---GFQAVCLHGQMGQPKRLGALGKFKSGQR 696

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+A+RGLDIP V  V N ++P+  ++YIHR+GRT RAGR G++   V + D++ 
Sbjct: 697 NVLIATDVASRGLDIPSVDLVVNMEIPSHGKDYIHRVGRTARAGRAGRSIAFVTQYDVEV 756

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
              +E LI +K+     D  ++    E++  AQ   AR+
Sbjct: 757 YQRMEALIGQKLPPYVCDEETVLVLQERVGEAQRMAARE 795


>gi|321257748|ref|XP_003193695.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
 gi|317460165|gb|ADV21908.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
          Length = 790

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 140/369 (37%), Positives = 208/369 (56%), Gaps = 9/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  ++ A+    +  PTPIQ + IPL L   D+ G A TG+GKTA+F++P+L  
Sbjct: 206 FTAMNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPILER 265

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV--ALLIGGIPFEAQNK 117
           L   ++G+      R L+L PTRELA Q     +   +   L V  ALL+GG+   AQ  
Sbjct: 266 LCYRDRGKGGAAC-RVLVLCPTRELAVQCEAVGKALAEKGGLDVRFALLVGGLSLNAQAH 324

Query: 118 KLERGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            L    D+LI TPGR++DH  N     ++ +++LVIDEADRML+ GF   ++ I    P 
Sbjct: 325 TLRTLPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEAGFTDELEEIIKACPR 384

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           +RQT+LFSATMTD + ++ +  L  P R+ V+   +TA+ +   FV   +  S+  +LL 
Sbjct: 385 SRQTMLFSATMTDSVDELVKLSLDKPIRVFVDPKRNTAKGLTQEFVRIRSDDSRSPSLLA 444

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L  +   +  IIF   K     +       G     +HGN+ Q  R++ L++FK  T+
Sbjct: 445 --LCKRTIREKCIIFFRSKALAHQMRIVFGLFGLKAAELHGNLTQEQRLQALNDFKASTV 502

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             ++A+DLA+RGLDI  V  V N+D+P +   Y HR+GRT RAGR G++ +LV + D K 
Sbjct: 503 DYLLATDLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSISLVGEADRKM 562

Query: 357 IDAIEKLIE 365
           + A  K  E
Sbjct: 563 LKAAIKQAE 571


>gi|189208750|ref|XP_001940708.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187976801|gb|EDU43427.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 805

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 200/363 (55%), Gaps = 15/363 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  ++  +   G+ +PTPIQ K +P+ +Q  DV G A+TG+GKTA+F++P+L  
Sbjct: 277 FQAMSLSRPILRGLASVGFTEPTPIQNKAVPIAMQGKDVVGGAETGSGKTAAFLIPILER 336

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  I  PTRELA Q  +   K     ++T AL+ GG     Q   L+  
Sbjct: 337 LLYRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSTRDQEAVLKTR 396

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     + ++EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 397 PDVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFESQLNEILTTIPKSRQTM 456

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-TYAQYSKKCALLQQLLQ 240
           LFSATMT  + K+    +  P R+ V+    T   +   FV     +  K+ A L  + +
Sbjct: 457 LFSATMTSSVDKLIRIGMDKPVRLMVDAKKHTVAGLTQEFVRLRQGKEDKRLAYLMYICE 516

Query: 241 SQDTMKNGIIFCNQKKN------VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
              T K  I+F  QKK       V  LC      G     +HGN+ Q  R++ +  F+ G
Sbjct: 517 KIYTEKV-IVFFRQKKEAHRVRVVFALC------GLKASELHGNMSQEQRIQSVEAFRSG 569

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
               ++A+D+A+RGLDI +V  V N++ P   E Y+HR+GRT RAGR G+A TL A+ D 
Sbjct: 570 KSAYLLATDVASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDR 629

Query: 355 KHI 357
           K +
Sbjct: 630 KVV 632


>gi|47097038|ref|ZP_00234610.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254828606|ref|ZP_05233293.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N3-165]
 gi|254898593|ref|ZP_05258517.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes J0161]
 gi|254911917|ref|ZP_05261929.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes J2818]
 gi|254936243|ref|ZP_05267940.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes F6900]
 gi|47014573|gb|EAL05534.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601004|gb|EEW14329.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N3-165]
 gi|258608833|gb|EEW21441.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes F6900]
 gi|293589878|gb|EFF98212.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes J2818]
          Length = 470

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 136/367 (37%), Positives = 206/367 (56%), Gaps = 17/367 (4%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +L LS ++  A+ + GY + TP+Q   IP+ L   D+   +QTG+GKTA+F +P   I E
Sbjct: 3   NLKLSEEIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIP---IAE 59

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           +       P+ LI+ PTRELA QV       G+   +  A + G  PF  Q  +L +   
Sbjct: 60  QVEWEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNH 119

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGR+LDH  +G L ++ +  LV+DE D ML MGFI  +++I S +P  RQ L FS
Sbjct: 120 IVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFS 179

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           ATM +E+Q + + +  +P  IE+   S     I H  +    Q   K   L+ +L +++ 
Sbjct: 180 ATMPEEMQGLIKRYQDDPMVIEM--ASEKTNPILHVEI----QTDNKEKTLKDVLITENP 233

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             + IIFCN K  V  L   L+        IHG + Q  R + + +FK G  + ++A+D+
Sbjct: 234 -DSAIIFCNTKNQVDELTDLLD---VKASKIHGGLRQEDRFRAMDDFKSGKSRFLIATDV 289

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL- 363
           A RG+D+ +V  V N+D+P   ENY+HRIGRTGRAG+ GKA + V   +   +  IE++ 
Sbjct: 290 AGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEML 349

Query: 364 ---IEKK 367
              IEKK
Sbjct: 350 DVTIEKK 356


>gi|152013501|sp|A4RHF1|DED1_MAGO7 RecName: Full=ATP-dependent RNA helicase DED1
          Length = 671

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 203/371 (54%), Gaps = 22/371 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  L   ++  +  A Y  PTP+Q  ++P+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 189 FSNPPLDDHLISNIELARYKVPTPVQKYSVPIVMGGRDLMACAQTGSGKTGGFLFPILSQ 248

Query: 63  LEK----------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
             K                GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 249 AFKTGPSPIPATNQGPGGYGRQRKAYPTSLILAPTRELVSQIYDESRKFAYRSWVRPCVV 308

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 309 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQ 368

Query: 167 IQNITSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT    +Q+++ +FL++   + V    ST+E I    +
Sbjct: 369 IRRIVEGEDMPNVQDRQTLMFSATFPGYIQQLARDFLKDYIFLSVGRVGSTSENITQRVM 428

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
               +  K   LL  L      +   +IF   K+N   L   L+ Q     +IHG+  QR
Sbjct: 429 EVKHRDDKISHLLDLLSTHGGGLT--LIFVETKRNADELSDFLQNQNLPATSIHGDRTQR 486

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 487 ERERALEMFRTGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 546

Query: 343 GKAFTLVAKED 353
           G A      +D
Sbjct: 547 GIATAFFDMKD 557


>gi|310795114|gb|EFQ30575.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 903

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 132/384 (34%), Positives = 212/384 (55%), Gaps = 31/384 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPL++ R DV G+A+TG+GKTA+FV+PM+  
Sbjct: 90  FQAMGLNANLLRAITKKGFSVPTPIQRKTIPLIMDRKDVVGMARTGSGKTAAFVIPMIER 149

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L    A+V   R LI+ P+RELA Q     +++ K  +L   LL+GG   E Q   +   
Sbjct: 150 LRAHSAKVGT-RALIMSPSRELALQTLKVVKEFSKGTDLKCILLVGGDSMEDQFSMMASN 208

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P +RQ+LL
Sbjct: 209 PDIVIATPGRFLHLKVEMGLDLSSIKYVVFDEADRLFEMGFAAQLTEILHALPPSRQSLL 268

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL--- 239
           FSAT+   L + +   LQ+P  + ++  +  +  +E  F +      K+ ALL  L    
Sbjct: 269 FSATLPASLVEFARAGLQDPTLVRLDAETKVSPDLESAFFSVKGA-EKEAALLHILSDLI 327

Query: 240 --------------------------QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
                                     + + T  + IIF   K +V  L   L K G++V 
Sbjct: 328 KMPHGTPDGVPLDVVPSKKRKREGEGRGKPTEHSTIIFAATKHHVEYLAQLLTKAGYAVS 387

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            ++G++DQ +R     NF+ G   ++V +D+AARG+DIP + +V N+D P + + ++HR+
Sbjct: 388 YVYGSLDQEARRINTENFRNGRANILVVTDVAARGIDIPVLANVINYDFPPQPKVFVHRV 447

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHI 357
           GRT RAG+ G A+++V + D  ++
Sbjct: 448 GRTARAGQRGWAYSIVRELDTPYL 471


>gi|297520171|ref|ZP_06938557.1| ATP-dependent RNA helicase SrmB [Escherichia coli OP50]
          Length = 416

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 127/331 (38%), Positives = 193/331 (58%), Gaps = 4/331 (1%)

Query: 40  DVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
           DV G A TGTGKTA+++LP L  +L+  R +   PR LIL PTRELA QVAD+  +  K+
Sbjct: 15  DVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKH 74

Query: 99  YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
            +L +A + GG+ +    +      ++++ T GR+L +          +E L++DEADRM
Sbjct: 75  THLDIATITGGVAYMNHAEVFSENQNIVVATTGRLLQYIKEENFDCRAVETLILDEADRM 134

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETI 217
           LDMGF   I++I     + +QTLLFSAT+  D +Q  +E  L++P  +  N PS+     
Sbjct: 135 LDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSAN-PSTRERKK 193

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
            H +         K ALL  LL+  +  ++ I+F  +++ V  L + L + G + C + G
Sbjct: 194 IHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFVRKRERVHELANWLREAGINNCYLEG 252

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
            + Q  R + +    EG + ++VA+D+AARG+DIPDV HVFNFD+P   + Y+HRIGRT 
Sbjct: 253 EMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTA 312

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           RAGR G A +LV   D   +  + + IE+ +
Sbjct: 313 RAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 343


>gi|82915130|ref|XP_728973.1| DEAD/DEAH box helicase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485712|gb|EAA20538.1| DEAD/DEAH box helicase, putative [Plasmodium yoelii yoelii]
          Length = 517

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 131/370 (35%), Positives = 212/370 (57%), Gaps = 12/370 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L +  +V+ ++ + G+ KPT IQ K +P+V Q+ D+ G+++TG+GKTA F++P   I
Sbjct: 110 FEQLNICEEVLQSIKELGWEKPTLIQQKVLPIVFQKRDIIGLSETGSGKTACFIIP---I 166

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++ + + +    LI+ PTREL  Q+A N +  G N  + +  + GG+    Q+  L + 
Sbjct: 167 LQELKIKKQSFFALIISPTRELCIQIAQNAQALGSNLLINICTIFGGVDIVTQSLNLAKK 226

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            +++I TPGRILDH N  K   + N++ L+ DEAD++L + F   I  +  ++P  R T 
Sbjct: 227 PNIIIGTPGRILDHLNNTKGFNLKNLKYLIFDEADKLLSLDFESSINKLLLILPKNRITF 286

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLL 239
           LFSATMT  + K+ +  L+NP +I+V+   ST +T+   + F+    +Y+  C+L     
Sbjct: 287 LFSATMTKSVSKLKKASLKNPIQIQVSNKYSTVKTLIETYIFLPLKYKYTYLCSLCFYF- 345

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T KN IIF N       L       G     +HG + Q  R+  L+ FK     ++
Sbjct: 346 ----TNKNIIIFSNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNLFKTNKYNIL 401

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++ + ARGLD+ ++  V NFD+ +  E YIHR+GRT RAG+ GK+ T V + D++    
Sbjct: 402 ISTQVGARGLDLKNIKIVINFDLCSCKE-YIHRVGRTARAGKTGKSITFVTQYDVETFLT 460

Query: 360 IEKLIEKKVD 369
           IEK + KK+D
Sbjct: 461 IEKQLNKKID 470


>gi|258563228|ref|XP_002582359.1| hypothetical protein UREG_07132 [Uncinocarpus reesii 1704]
 gi|237907866|gb|EEP82267.1| hypothetical protein UREG_07132 [Uncinocarpus reesii 1704]
          Length = 836

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 137/359 (38%), Positives = 199/359 (55%), Gaps = 3/359 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS  ++  +   G+  PTPIQ K IP+ L   D+ G A TG+GKTA+F++P+L  
Sbjct: 314 FQNFNLSRPILRGLAAVGFSAPTPIQRKAIPVGLLGKDLVGGAVTGSGKTAAFIIPILER 373

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R +IL PTRELA Q  +   K     ++T   L+GG     Q   L++ 
Sbjct: 374 LLYRPRKVPTSRVVILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKQR 433

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 434 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTM 493

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMTD + K+    L  P R+ V+    T  T+   FV     +  K+   L  L Q
Sbjct: 494 LFSATMTDSVDKLIRVGLNRPVRLMVDAKKQTVGTLVQEFVRLRPGREGKRMGYLVLLCQ 553

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  T +  I+F  QKK            G     +HG++ Q  R+  +  F++G +  ++
Sbjct: 554 TVYTNRV-IVFFRQKKEAHRARIVFGLLGLKAAELHGSMSQEQRIHAVEAFRDGKVPFLL 612

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + A
Sbjct: 613 ATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKIVKA 671


>gi|121605306|ref|YP_982635.1| DEAD/DEAH box helicase domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120594275|gb|ABM37714.1| DEAD/DEAH box helicase domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 417

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 143/371 (38%), Positives = 211/371 (56%), Gaps = 14/371 (3%)

Query: 1   MDFADLGLSPKVVCAVLDA----GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFV 56
           M F+ LG SP ++  +L A    GY+ PT IQ   IP +LQ  D+ G AQTG+GKTA+F 
Sbjct: 1   MPFSSLGFSPALLPVLLRAIAEKGYLAPTAIQAAAIPAILQGRDIVGSAQTGSGKTAAFA 60

Query: 57  LPMLTILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY---NLTVALLIGGIPF 112
           LP+L  L +  A   R  R L+L PTRELAAQV +       NY    + VA++ GG+  
Sbjct: 61  LPLLHQLAQAPADAKRRIRGLVLVPTRELAAQVGEAIVSLA-NYLPQRVKVAVVFGGVSI 119

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q   L  GAD+++ TPGR++D  +   L ++ + +LV+DEADR+LD+GF   +  I +
Sbjct: 120 NPQMMNLRGGADIIVATPGRLIDLIDHNALKLDQVGMLVLDEADRLLDLGFGEELGRILA 179

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKK 231
           L+P  RQ+L FSAT    ++ ++   L +P RIEV     +  E ++    A     S++
Sbjct: 180 LLPAQRQSLFFSATFPPAIEALAAGMLTDPLRIEVEAVKQAEPEIVQR---AIEVDPSRR 236

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL+ L Q++   +  ++F   K     +   L K        HG + Q  R ++L +F
Sbjct: 237 TQLLRHLAQTEKWSRV-LVFVATKHAAEIVADKLRKADIEAEPFHGELSQGKRNQVLQDF 295

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K   +Q++VA+D+AARG+DI  +  V N+D+P  + +YIHRIGRTGRAG  G A + V+ 
Sbjct: 296 KAKLLQVVVATDVAARGIDIAQLPVVVNYDLPRSSVDYIHRIGRTGRAGETGIAISFVSA 355

Query: 352 EDIKHIDAIEK 362
           E   H   IEK
Sbjct: 356 ETEAHFKLIEK 366


>gi|91092124|ref|XP_972501.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68
           [Tribolium castaneum]
          Length = 540

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + G    V+  +   G+  PTPIQ +  P+ L   D+ GIA TG+GKT S++LP +  
Sbjct: 93  FEEAGFPDYVMSEIRKMGFKHPTPIQSQGWPIALSGRDMVGIASTGSGKTLSYILPAIVH 152

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +      +R   P  L+L PTRELA Q+      +G++  +    + GG P   Q   L 
Sbjct: 153 INHQPRLLRGDGPIALVLAPTRELAQQIQQVATDFGRSSKIRNTCVFGGAPKGPQANDLM 212

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G +++I TPGR++D     +  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 213 DGVEIVIATPGRLIDFLESNRTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT 272

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALL 235
           L++SAT   E+Q ++  FL++  +I V +   +A     + I+ C    Y + +K   LL
Sbjct: 273 LMWSATWPKEVQALAAEFLKDYIQINVGSLQLSANHNILQIIDVC--QEYEKETKLSTLL 330

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++++  ++     IIF   KK V  +   +++ G+    IHG+  Q+ R  +L +F+ G 
Sbjct: 331 KEIMAEKEN--KTIIFIETKKRVDEITRKMKRDGWPAVCIHGDKSQQERDWVLQDFRTGK 388

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI- 354
             ++VA+D+AARGLD+ DV  V NFD P+ +E+Y+HRIGRTGR+ R G A+T     +  
Sbjct: 389 APILVATDVAARGLDVEDVKFVINFDYPSNSEDYVHRIGRTGRSQRTGTAYTFFTPANAN 448

Query: 355 KHIDAIEKLIEKK 367
           K  D +  L E K
Sbjct: 449 KAADLVSVLKEAK 461


>gi|50291147|ref|XP_448006.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661189|sp|Q6FP38|DBP1_CANGA RecName: Full=ATP-dependent RNA helicase DBP1
 gi|49527317|emb|CAG60957.1| unnamed protein product [Candida glabrata]
          Length = 604

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 135/346 (39%), Positives = 195/346 (56%), Gaps = 19/346 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL------------EKG 66
           A + KPTP+Q  +IP+V +  D+   AQTG+GKT  F+ P+L+ L               
Sbjct: 156 ANFSKPTPVQKYSIPIVTKNRDLMACAQTGSGKTGGFLFPVLSELFLNGPAPLPEHTRHS 215

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
             R   P  L+L PTRELA Q+ D  +KY     +   ++ GG P   Q + ++RG ++L
Sbjct: 216 YMRKCYPSALVLAPTRELAIQIFDEAKKYTYRSWVKPYVVYGGAPIGQQMRDMDRGCNLL 275

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLL 182
           + TPGR+ D   RGK+ + N++ LV+DEADRMLDMGF P I++I           RQTL+
Sbjct: 276 VATPGRLNDLLERGKISLVNVKYLVLDEADRMLDMGFEPQIRHIVEDCDMPSVNDRQTLM 335

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT   E+Q ++ +FL++   + V    ST+E I+   V     Y K  ALL  L+   
Sbjct: 336 FSATFPREIQHLARDFLKDYIFLSVGRVGSTSENIQQK-VLFVEDYDKNSALLDILINEI 394

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D +   ++F   K+    L   L  Q F   AIHG+  Q  R + L  F+ G   ++VA+
Sbjct: 395 DGLT--LVFVETKRMADQLTDFLIVQNFKATAIHGDRTQAERERALHAFRNGIANILVAT 452

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +AARGLDIP+V +V N+D+P   ++Y+HRIGRTGRAG  G A + 
Sbjct: 453 AVAARGLDIPNVTNVINYDLPTDIDDYVHRIGRTGRAGNVGVATSF 498


>gi|302774092|ref|XP_002970463.1| hypothetical protein SELMODRAFT_441099 [Selaginella moellendorffii]
 gi|300161979|gb|EFJ28593.1| hypothetical protein SELMODRAFT_441099 [Selaginella moellendorffii]
          Length = 1198

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 129/325 (39%), Positives = 190/325 (58%), Gaps = 6/325 (1%)

Query: 44  IAQTGTGKTASFVLPMLTILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLT 102
              TG+GKT  ++LP    LE+ R   R  P  L+L PTRELA Q+ +   K+G++  +T
Sbjct: 223 FGNTGSGKTLGYLLPAFMHLERRRNNPRSGPTVLVLAPTRELATQIHEEAVKFGRSSRIT 282

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
              + GG     Q + +ERG D++I TPGR+ D     ++ +  +  LV+DEADRMLDMG
Sbjct: 283 STCVYGGASKGPQLRDIERGCDIVIATPGRLNDFLEMRRISLRQVSYLVLDEADRMLDMG 342

Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHC 220
           F P I+ I + VP  RQTL+++AT   E++K++ + L NP ++ +      A  + I  C
Sbjct: 343 FEPQIRKIVNEVPVQRQTLMYTATWPKEVRKIAGDLLMNPIQVNIGNTDDLAANKAITQC 402

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
                 Q   K   L+ +L++Q+     IIFC+ K+    L  SL ++ F   AIHG+  
Sbjct: 403 VEVVSPQ--DKARKLELILRTQEPGSKIIIFCSTKRMCDQLARSL-RRDFGAVAIHGDKS 459

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q  R  +LS FK G   ++VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG
Sbjct: 460 QGERDWVLSQFKAGKSPVLVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAG 519

Query: 341 RHGKAFTLVAKEDIKHIDAIEKLIE 365
             G A T  A++D K+   + K++E
Sbjct: 520 ATGLAHTFFAEQDGKYARDLIKVLE 544


>gi|194227730|ref|XP_001492319.2| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX53
           (DEAD box protein 53) (DEAD box protein CAGE)
           (Cancer-associated gene protein) (Cancer/testis antigen
           26) (CT26) [Equus caballus]
          Length = 624

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 135/361 (37%), Positives = 212/361 (58%), Gaps = 7/361 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK---G 66
           P+V+ ++  AG+ +PTPIQ +  P+VLQ  D+ G+AQTGTGKT S+++P    L+     
Sbjct: 227 PEVLKSIKKAGFQRPTPIQSQAWPIVLQGMDLIGVAQTGTGKTLSYLIPGFIHLDSQPIS 286

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R     P  L+L PTRELA QV     KY     L    + GG   + Q + + +G D++
Sbjct: 287 REERNGPGMLVLTPTRELALQVEAECSKYSYK-GLKSVCVYGGGNRKEQIQHITKGVDII 345

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + +I  LV+DEAD+MLD+GF   I  I   V   RQT++ SAT
Sbjct: 346 IATPGRLNDLQMNKCVNLRSITYLVLDEADKMLDLGFEGQITKILLDVRPDRQTVMTSAT 405

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
               +++++ ++L+ P  + V T    A  T++   + T  +  +K  L+Q+ L++    
Sbjct: 406 WPHTIRQLARSYLKEPMIVYVGTLDLVAVHTVKQDIIVTTEE--EKRTLIQEFLRNLAPE 463

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              IIF ++K    +L   L  QG  V ++HGN +Q  R + L +F+ G +++++A+DLA
Sbjct: 464 DKAIIFVSRKLVADDLSSDLSIQGVPVQSLHGNREQFDREQALDDFRSGRVKILIATDLA 523

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARGLD+ DV HV+N+D P   E Y+HR+GRTGRAG+ G + TL+ + D K    + K++E
Sbjct: 524 ARGLDVRDVTHVYNYDSPKNLEEYVHRVGRTGRAGKTGVSVTLMTQADWKIATELIKILE 583

Query: 366 K 366
           +
Sbjct: 584 R 584


>gi|169598332|ref|XP_001792589.1| hypothetical protein SNOG_01967 [Phaeosphaeria nodorum SN15]
 gi|118595361|sp|Q0V1Z7|DRS1_PHANO RecName: Full=ATP-dependent RNA helicase DRS1
 gi|111069059|gb|EAT90179.1| hypothetical protein SNOG_01967 [Phaeosphaeria nodorum SN15]
          Length = 808

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 138/361 (38%), Positives = 199/361 (55%), Gaps = 15/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  +   +   G+ +PTPIQ K IP+ +Q  DV G A+TG+GKTA+F++P+L  
Sbjct: 287 FHAMSLSRPIQKGLAAIGFTEPTPIQAKAIPIAMQGKDVVGGAETGSGKTAAFLIPILER 346

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  I  PTRELA Q  +   K     ++T ALL GG     Q   L+  
Sbjct: 347 LLYRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALLAGGFSSREQEVMLKTR 406

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     + ++EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 407 PDVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFETQLNEILTTIPKSRQTM 466

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-TYAQYSKKCALLQQLLQ 240
           LFSATMT  + K+    +  P R+ V+    T + +   F+     +  K+ A L  + +
Sbjct: 467 LFSATMTSTVDKLIRIGMDKPVRLMVDAKKHTVKGLTQEFIRLRQGKEDKRLAYLMYICE 526

Query: 241 SQDTMKNGIIFCNQKKN------VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
              T +  IIF  QKK       V  LC      G     +HGN+ Q  R++ +  F+ G
Sbjct: 527 KIYTERV-IIFFRQKKEAHRVRVVFALC------GLKASELHGNMSQEQRIQAVEAFRSG 579

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
               ++A+D+A+RGLDI +V  V N++ P   E Y+HR+GRT RAGR G+A TL A+ D 
Sbjct: 580 KSSYLLATDVASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDR 639

Query: 355 K 355
           K
Sbjct: 640 K 640


>gi|328874156|gb|EGG22522.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 576

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 137/370 (37%), Positives = 221/370 (59%), Gaps = 9/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L P +V +    G+ +P+ IQ  TIP VL+  D+   A+TG+GKTA+F +P+L++
Sbjct: 95  FGDLKLQPWLVNSCKILGFKQPSNIQYNTIPKVLEGRDILASAKTGSGKTAAFAIPILSL 154

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    V     ++L PTRELA Q+ + F+  G   N+  A++IGGI   AQ+  L++ 
Sbjct: 155 LSEDPYGVF---AVVLTPTRELAVQIGEQFKAIGSAMNVNCAVVIGGIDSVAQSLVLDKR 211

Query: 123 ADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTRQ 179
             +++ TPGR+  H + G K+ +   + LV+DEADR+L   F   I+ I   +P    RQ
Sbjct: 212 PHIIVATPGRLASHLSNGLKIALKFCKFLVLDEADRILCEDFELEIEKIVEHLPPIENRQ 271

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLL+SATMT+ L+K+    +++P   E N+   T +T++  ++   A  +K C L+  LL
Sbjct: 272 TLLYSATMTNNLKKLQLVPMKDPFVFEDNSKYDTVDTLKQHYIYMPA-LAKDCHLVY-LL 329

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +S     + IIF N  + V  +   L K      ++H  +DQ+ R++ L  FK G ++++
Sbjct: 330 KSF-PQSSCIIFVNNCRTVEAVKGMLNKLDIKTVSLHSFLDQKGRLRALKQFKSGFVKVL 388

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLDIPDV  V N+ + N +++YIHR+GRT R GR GKA + V   D+  +  
Sbjct: 389 IATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFGRTGKAISFVTPHDVDLVKN 448

Query: 360 IEKLIEKKVD 369
           +E  I K+++
Sbjct: 449 VETAIGKQLE 458


>gi|242240212|ref|YP_002988393.1| ATP-dependent RNA helicase SrmB [Dickeya dadantii Ech703]
 gi|242132269|gb|ACS86571.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
          Length = 446

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 135/354 (38%), Positives = 200/354 (56%), Gaps = 4/354 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++  L   ++ A+ D G+ +PT IQ   IP  +   D+ G A TGTGKTA+++LP L 
Sbjct: 5   NFSEFDLDESLLEALNDMGFKRPTAIQAAAIPPAMDGRDILGSAPTGTGKTAAYLLPALQ 64

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD       + +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARTLAAHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT
Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184

Query: 181 LLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+  + +Q  +E  L  P  +E +      + I+  +         K ALL  LL
Sbjct: 185 LLFSATLEGNAVQDFAERLLNEPVSVEADPSRRERKKIQQWYYRA-DNIEHKTALLCHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  ++ IIF  +++ V  L   L + G   C + G + Q  R + ++    G + ++
Sbjct: 244 RQPDVTRS-IIFVRKRERVHELVDWLRQAGIDACYLEGEMVQAKRNEAITRLSNGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+AARGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D
Sbjct: 303 VATDVAARGLDILDISHVFNFDMPRTADIYLHRIGRTGRAGRKGCAISLVEAHD 356


>gi|55980078|ref|YP_143375.1| ATP-dependent RNA helicase [Thermus thermophilus HB8]
 gi|55771491|dbj|BAD69932.1| ATP-dependent RNA helicase [Thermus thermophilus HB8]
          Length = 517

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 145/395 (36%), Positives = 223/395 (56%), Gaps = 19/395 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F D  L P+++ A+   G   PTPIQ   +PL L+  D+ G A+TGTGKT +F LP+ 
Sbjct: 8   MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 67

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   + R R PR L+L PTRELA QVA          +L V  + GG  +  Q + L 
Sbjct: 68  ERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALL 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGAD ++ TPGR LD+  +G L ++ +E+ V+DEAD ML MGF   ++ + S  P +RQT
Sbjct: 126 RGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQT 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT+    ++++E +++NP  I V  + P +  E       A  A    +  +L  L
Sbjct: 186 LLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEEE------AVPAPVRGRLEVLSDL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L    +    ++F   K     +   L + G    A+HG++ Q  R ++L  F++G +++
Sbjct: 240 LYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHLAQALHGDLSQGERERVLGAFRQGEVRV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIP V  V ++ +P+RAE Y HR GRTGRAGR G+   L    + + ++
Sbjct: 299 LVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVE 358

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPL-EKIDIAQHNH 392
           A+E+ + ++          +NPP  E++  A+  H
Sbjct: 359 ALERAVGRR-------FKRVNPPTPEEVLEAKWRH 386


>gi|27463689|gb|AAO15914.1|AF510054_1 vasa-like [Schistocerca gregaria]
          Length = 588

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 133/358 (37%), Positives = 206/358 (57%), Gaps = 13/358 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DFA  GL   V+  V   GY KPTP+Q   IP++    D+   AQTG+GKTA+F+LP++
Sbjct: 167 VDFARSGLREFVLQNVKKCGYTKPTPVQKYAIPIIAGGRDLMACAQTGSGKTAAFLLPII 226

Query: 61  -TILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            TIL   R  V       P  +IL PTRELA Q+ +   K+     +   ++ GG     
Sbjct: 227 NTILNDPRELVMTGQGCEPHAVILSPTRELALQIFNEARKFALGSIVKSVVVYGGTSTMH 286

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI---T 171
           Q +++ RG  +L+ TPGR++D  NRG++   ++  +V+DEADRMLDMGF+P ++ +    
Sbjct: 287 QAQQVARGCHILVATPGRLMDFLNRGRVNFQSVRFVVLDEADRMLDMGFLPDVEKMLEHP 346

Query: 172 SLVPF-TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
           ++VP   RQT++ SAT  +E+Q+++  FL N   + V         +E  F    +++ K
Sbjct: 347 TMVPTGERQTVMVSATFPEEIQRLATKFLSNYLFLAVGIVGGACSDVEQIFYKV-SKFDK 405

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L + L   ++  K  ++F   K+    L   L +Q F   +IHG+  Q  R + L +
Sbjct: 406 RAKLTEIL--REEGGKKVLVFVETKRIADFLAAFLCEQKFPTTSIHGDRLQSQREEALYD 463

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           FK G + ++VA+ +AARGLDI +V HV N+D+P   + Y+HRIGRTGR G  G+A + 
Sbjct: 464 FKSGRMGILVATAVAARGLDIKNVAHVINYDLPKSIDEYVHRIGRTGRVGNRGRATSF 521


>gi|77360375|ref|YP_339950.1| ATP-dependent RNA helicase, DEAD box [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76875286|emb|CAI86507.1| ATP-dependent RNA helicase, DEAD box family [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 440

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 211/379 (55%), Gaps = 9/379 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLG+  ++   +   G  +PT IQ   +P  L  HD+   ++TG+GKT +F+LP +
Sbjct: 1   MHFTDLGIDNRLETQLAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAV 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + K +A   R PR LI+ PTRELA QV           N+    ++GG  F  Q K L
Sbjct: 61  QRVMKQKALSKRDPRVLIVAPTRELATQVFTQLRLLIAGTNIKAVKILGGENFNDQIKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-R 178
                 ++ TPGR+ DH  +  L ++ +E+L+ DEADR+LD+GF   ++ I  L     R
Sbjct: 121 RNDPQFVVATPGRLADHLTKRTLQLSGLELLIFDEADRILDLGFTEQLKMINDLADHRLR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQ 236
           QTLLFSAT+   ++  +S N L+ PK+I ++  +     I+   ++A +  +  K ALL+
Sbjct: 181 QTLLFSATLDHAQVDALSRNLLKKPKQIMLSAANEQHSDIKQSLYLADHLDH--KEALLE 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L +QD +   IIF   + +   L  +L  +GF    + G++ Q  R+ I+  F     
Sbjct: 239 HFL-NQDDVGQCIIFTATRADTSRLSEALCAKGFKAQPLAGDLAQNKRLDIMDAFSRENF 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++ +D+A+RGLD+  V HV NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D   
Sbjct: 298 KILITTDVASRGLDLLSVTHVINFDLPKHAEEYVHRIGRTGRAGFKGSALSLVGPKDWPS 357

Query: 357 IDAIEKLI--EKKVDWLNG 373
             AI+  +  E K D ++G
Sbjct: 358 YLAIKAFLNDELKFDSVDG 376


>gi|257126351|ref|YP_003164465.1| DEAD/DEAH box helicase [Leptotrichia buccalis C-1013-b]
 gi|257050290|gb|ACV39474.1| DEAD/DEAH box helicase domain protein [Leptotrichia buccalis
           C-1013-b]
          Length = 571

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 136/382 (35%), Positives = 215/382 (56%), Gaps = 10/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIP-LVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F D GLS +++ A+   G+ +P+ IQ   +P L+ +R  + G AQTGTGKTA+F +P+L 
Sbjct: 4   FEDFGLSTEMLNALSKKGFEEPSEIQKLVVPELLKERTHLIGQAQTGTGKTAAFGIPILE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +      R LIL PTRELA QV+D         ++ V  + GG   E Q K+L+ 
Sbjct: 64  TIDADKT----VRALILAPTRELANQVSDEIYSLKGEKDIKVLAVYGGASIENQIKRLKA 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR++D  N+  L +N ++  V+DEAD ML+MGF+  I+ I       ++ L
Sbjct: 120 GVDIVVGTPGRVMDLINKKVLKVNGLDYFVLDEADEMLNMGFLEDIEEILEKTNDEKKML 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT+   +  +++ F+   K ++V     T    E  +     Q  K  AL + L   
Sbjct: 180 FFSATIPKAILAIAKRFMPEHKLLKVEKKELTTNLTEQIYYEV-KQEDKFEALCRVLDYE 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q+    GI+FC  K  V ++ + L+ + +    IHG+I Q  R K L  FK+  + ++VA
Sbjct: 239 QNFY--GIVFCRTKSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKQILTILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ ++ HV N+ +P  AE+Y+HRIGRTGRAG  G A T V   +   +  I+
Sbjct: 297 TDVAARGIDVSNLTHVINYSIPQEAESYVHRIGRTGRAGHKGIAITFVTPREASKLAQIK 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           ++   K D    D+ ++   LE
Sbjct: 357 RVT--KTDIKREDIPNVEEILE 376


>gi|320593114|gb|EFX05523.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 956

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 133/393 (33%), Positives = 212/393 (53%), Gaps = 40/393 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL+  ++ A+   G+  PTPIQ KTIPL++ R DV G+A+TG+GKTA+FV+PM+  
Sbjct: 111 FQALGLNANLLRAITRKGFSVPTPIQRKTIPLIMGRRDVVGMARTGSGKTAAFVIPMIER 170

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L    ARV   R L+L P+RELA Q     ++ GK  +L   LL+GG   E Q   +   
Sbjct: 171 LRAHSARV-GARALVLSPSRELALQTLKVVKELGKGTDLKTILLVGGDSLEEQFGLVASN 229

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L ++++  +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 230 PDIVIATPGRFLHLKVEMSLDLSSVRYVVFDEADRLFEMGFAAQLTEILHALPPSRQTLL 289

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
           FSAT+   L + +   LQ+P  + ++  +  +  ++  F +      K+ ALL  L    
Sbjct: 290 FSATLPSTLVEFARAGLQDPSLVRLDAETKISPDLQSAFFSVKGS-EKEGALLHLLHDVI 348

Query: 239 ----------------------------------LQSQDTMKNGIIFCNQKKNVVNLCHS 264
                                              + + T  + I+F   K +V  +   
Sbjct: 349 GMPLGQPAGPAEAAEGQFADEGSKKRKRDASRVSFREKPTEHSTIVFAATKHHVEYVAAV 408

Query: 265 LEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPN 324
           L + GF+V  ++G++DQ +R   + +F+ G   ++V +DLAARG+DIP + +V N+D P 
Sbjct: 409 LREAGFAVSYVYGSLDQTARKMHVDDFRRGRTNILVVTDLAARGIDIPVLANVINYDFPP 468

Query: 325 RAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +A+ ++HR+GRT RAG+ G +++LV   D  ++
Sbjct: 469 QAKVFVHRVGRTARAGQRGWSYSLVQDTDAPYL 501


>gi|226437753|gb|ACO56244.1| putative DEAD-box RNA helicase [Caenorhabditis elegans]
          Length = 708

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 144/397 (36%), Positives = 220/397 (55%), Gaps = 31/397 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F+DL L   +   +  AGY +PTP+Q  +IP +    D+   AQTG+GKTA+F++P++  
Sbjct: 233 FSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPLVNA 292

Query: 61  -----------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                      ++   G  + + P  L+L PTREL+ Q+ +   K+     +T ALL GG
Sbjct: 293 ILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIFNESRKFAYRTPITSALLYGG 352

Query: 110 IP-FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
              ++ Q  KL  G  +LI TPGR++D  ++G + M     LV+DEADRMLDMGF P I+
Sbjct: 353 RENYKDQIHKLRLGCHILIATPGRLIDVMDQGLIGMEGCRYLVLDEADRMLDMGFEPQIR 412

Query: 169 NITSL--VPF--TRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVA 223
            I     +P    R T +FSAT   E+Q ++++FL +N   + V    ST+E I    V 
Sbjct: 413 QIVECNRMPSKEERITAMFSATFPKEIQLLAQDFLKENYVFLAVGRVGSTSENIMQKIV- 471

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + +  +K + L  LL +       ++F   K+   +L + L +Q + V  IHG++ Q  
Sbjct: 472 -WVEEDEKRSYLMDLLDATGDSSLTLVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQFE 530

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R K L  F+ GT  ++VA+ +AARGLDIP+V HV N+D+P+  + Y+HRIGRTGR G  G
Sbjct: 531 REKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVG 590

Query: 344 KAFTL-------VAKEDIKHIDAIEKLIEKKVDWLNG 373
            A +        +A+E    +D I +  ++  DWL G
Sbjct: 591 LATSFFNDKNRNIARE---LMDLIVEANQELPDWLEG 624


>gi|25027342|ref|NP_737396.1| putative ATP-dependent RNA helicase [Corynebacterium efficiens
           YS-314]
 gi|23492623|dbj|BAC17596.1| putative ATP-dependent RNA helicase [Corynebacterium efficiens
           YS-314]
          Length = 369

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 187/335 (55%), Gaps = 13/335 (3%)

Query: 50  GKTASFVLPMLT-ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
           GKT  F +P+L  + +          PR L++ PTRELA QV ++ E+   N  L V   
Sbjct: 2   GKTYGFGVPLLDRVFDSADIEEIDGTPRALVIVPTRELAVQVGEDLERAAVNLPLKVFTF 61

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG P+E Q   LE G DV++ TPGR+LD + RG L ++ + ILV+DEAD MLD+GF+P 
Sbjct: 62  YGGTPYEEQIDALETGVDVVVGTPGRLLDLYQRGALRLDKVAILVLDEADEMLDLGFLPD 121

Query: 167 IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
           I+ I   +    QT+LFSATM   +  ++ +FL  P  I   +  S A       +   A
Sbjct: 122 IEKIMRALTHKHQTMLFSATMPGPILTLARSFLDKPVHIRAESADSAATHATTRQIVFQA 181

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
               K A+  ++LQ++   K  IIF   K+    +   L  +GF+V ++HG++ Q +R +
Sbjct: 182 HRMDKEAVTARILQARGRGKT-IIFARTKRTAAQVAEDLAARGFTVGSVHGDMGQPARER 240

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L+ F+ G I ++VA+D+AARG+DI DV HV N+  P+    Y+HRIGRTGRAG  G A 
Sbjct: 241 SLNAFRSGKIDILVATDVAARGIDIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGTAV 300

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           TLV  +++    AI   +E         L   NPP
Sbjct: 301 TLVGYDELLKWTAINNELE---------LGQPNPP 326


>gi|310790707|gb|EFQ26240.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 733

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 127/381 (33%), Positives = 205/381 (53%), Gaps = 31/381 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + GL  +++  V   GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+LT 
Sbjct: 292 WEESGLPRQLLNIVDRVGYKDPSPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLTY 351

Query: 63  LEKGRARVRMPR-----TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           ++       + +      LIL PTREL  Q+     K+       V  ++GG   E Q  
Sbjct: 352 IQDLPPLTEINKNDGAYALILAPTRELVQQIETEAHKFADPLGFNVVSIVGGHSLEEQVH 411

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RGA++++ TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +P +
Sbjct: 412 ALSRGAEIIVATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEESVNKILDALPVS 471

Query: 178 -------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS 212
                                    RQT++++ATM   ++K++  +L+ P  + +     
Sbjct: 472 NEKPDTDDAENAQLMQKYLGATDRYRQTMMYTATMPPTVEKIARKYLRRPAIVTIGNAGE 531

Query: 213 TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             ET+E   V   +   KK   LQ++L + D     I+F N K+N   +   +++ G+S 
Sbjct: 532 AVETVEQR-VEFVSGEDKKKKRLQEILGAGDFAPPIIVFVNIKRNCDAVARDVQRMGYSA 590

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
             +HG+  Q  R   L++ + G  Q++VA+DLA RG+D+PDV  V NF++    E+Y HR
Sbjct: 591 VTLHGSKTQEQREAALASVRNGQTQVLVATDLAGRGIDVPDVSLVINFNMATNIESYTHR 650

Query: 333 IGRTGRAGRHGKAFTLVAKED 353
           IGRTGRAG+ G A T + + D
Sbjct: 651 IGRTGRAGKSGVAITFLEQSD 671


>gi|121595647|ref|YP_987543.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
           JS42]
 gi|120607727|gb|ABM43467.1| DEAD/DEAH box helicase domain protein [Acidovorax sp. JS42]
          Length = 625

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 143/410 (34%), Positives = 225/410 (54%), Gaps = 55/410 (13%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGI------AQTGTGKTASFV 56
           F +LGL+P++V AV D GY +PT +Q + IPL +   D          +QTG+GKTA+F+
Sbjct: 39  FIELGLAPELVQAVADLGYTEPTQVQTRAIPLAMGSGDDASFIDLMVSSQTGSGKTAAFL 98

Query: 57  LPMLTILEKGRA---------------------------------------RVRMPRTLI 77
           LP+L  L + +A                                       +   P  L+
Sbjct: 99  LPVLHTLIRQQAEAEVAERAAFERAAAEAAARGEAPPKRPKRKNPTQARNFKAATPGALV 158

Query: 78  LEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           L PTRELA QVA D  +       L +A ++GG+P++ Q  KL+  A++++ TPGR+LD 
Sbjct: 159 LCPTRELAQQVAHDAIDLVKHCKGLRIANVVGGMPYQLQIAKLQN-ANLVVATPGRLLDL 217

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
               ++ ++ ++ LV+DEADRMLD+GF   +  I  L    +QT++FSAT    +Q+++ 
Sbjct: 218 QRSQQIKLDQVQFLVVDEADRMLDLGFSDDLAEINQLTAQRKQTMMFSATFAPRIQQLAM 277

Query: 197 NFLQNP----KRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
             + +     K+I+++TP      I+   + A  AQ+ +K  LL   L+   ++   I+F
Sbjct: 278 RVMHDNGASVKKIQIDTPQEKHANIKQMLYWADNAQHKRK--LLDHWLRDA-SIDQAIVF 334

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
            + +     L + L+++GFS  A+HG + Q  R + L   + G +Q++VA+D+AARG+D+
Sbjct: 335 ASTQVECDGLANDLQQEGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDV 394

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           P + HVFNF +P +AE+Y HRIGRTGRAGR G A T     D + I  IE
Sbjct: 395 PTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIE 444


>gi|311771467|dbj|BAJ25759.1| vasa [Pagrus major]
          Length = 631

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 136/363 (37%), Positives = 208/363 (57%), Gaps = 14/363 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 196 MTFDEAGLCESLRKTVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 255

Query: 61  T-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G A      ++ P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 256 QQLMADGVAASSFSELQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGVSTGY 315

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++L RG +VL  TPGR++D   RGK+ ++ +  LV+DEADRMLDMGF P ++ +    
Sbjct: 316 QIRELCRGCNVLCGTPGRLMDVIGRGKVGLSKLRYLVLDEADRMLDMGFEPAMRRLVGSP 375

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  D++Q++  +FL+     + V    +    +E  FV    ++S
Sbjct: 376 GMPSKENRQTLMFSATYPDDIQRMGADFLKTDYLFLAVGVVGAACNDVEQTFVQV-TKFS 434

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL  LL++  T +  ++F   K+    +   L ++     +IHG+ +QR R   L+
Sbjct: 435 KREQLLD-LLKTTGTERT-MVFVETKRQADFIATYLCQEKVPTTSIHGDREQRERELALA 492

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G   +MVA+ +AARGLDIPDV HV NFD+P   + Y+HRIGRTGR G  G+A +  
Sbjct: 493 DFRSGKCPVMVATSVAARGLDIPDVQHVVNFDLPKDIDEYVHRIGRTGRCGNTGRAVSFY 552

Query: 350 AKE 352
             E
Sbjct: 553 DPE 555


>gi|302801267|ref|XP_002982390.1| hypothetical protein SELMODRAFT_116186 [Selaginella moellendorffii]
 gi|300149982|gb|EFJ16635.1| hypothetical protein SELMODRAFT_116186 [Selaginella moellendorffii]
          Length = 577

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 134/359 (37%), Positives = 208/359 (57%), Gaps = 17/359 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--ML 60
           F D+GL   V+  + + G   PTPIQ++ +P +L   D+ G+A TG+GKT +FVLP  ML
Sbjct: 144 FKDMGLPKSVLRKLKEKGVKHPTPIQVQGLPAILSGRDMIGVAFTGSGKTLAFVLPLIML 203

Query: 61  TILEKGRARVRM---PRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGIP 111
            + E+ ++R++    P  LIL P+RELA Q  D  E++       +  +L   L IGG  
Sbjct: 204 ALEEEEKSRLKGGEGPVGLILCPSRELAKQTLDVIEEFVSVVNSSRCCHLRAMLCIGGTD 263

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
             +Q + + RG  +++ T GR+ D   + K+ +   + L +DEADR+ D GF   I+ + 
Sbjct: 264 MRSQLEAIRRGVHIVVATTGRLNDMLEKKKMNLERCKYLTLDEADRLCDSGFEDDIRKVM 323

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
             + F RQTLLFSATM  ++Q+ +   L  P  + VN   + A +++   V    +Y K+
Sbjct: 324 DHLKFQRQTLLFSATMPRKIQEFARGALVKP--VVVNVARAGAASLD---VVQQVEYVKQ 378

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IFC  K +V ++   L  +G  V +IHG  DQ  R   ++ 
Sbjct: 379 EAKMVYLLECLQQTPPPVLIFCESKGDVDSIYEYLVLKGVEVVSIHGGKDQEERQDAITK 438

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           FK+G   ++VA+D+A++GLD P + HV N+D+P+  ENY+HRIGRTGR G+ G A T +
Sbjct: 439 FKQGRKDVLVATDVASKGLDFPSIQHVINYDMPSEIENYVHRIGRTGRCGKTGIATTFI 497


>gi|46446899|ref|YP_008264.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400540|emb|CAF23989.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 407

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 132/403 (32%), Positives = 225/403 (55%), Gaps = 15/403 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L P ++ A+    + +P+ IQ + IPL+ ++ D+  ++QTG+GKTA+  +P   I
Sbjct: 17  FITFNLDPLILKALDKMNFKEPSRIQTEAIPLIQKKQDLIALSQTGSGKTATCAIP---I 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             +    +   + LI+ PTRELA Q A   +K GK   +    + GG     Q  KL+ G
Sbjct: 74  CNRVNTELTDIQALIIVPTRELALQYATETQKIGKYKGVKAFAIFGGEDSALQQSKLKHG 133

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             VL+ TPGR++D     ++ ++++E L++DEAD ML MGF   +  I   +  + QTLL
Sbjct: 134 VQVLVATPGRLIDFIYSRQIDLSHVETLILDEADEMLSMGFYDDLVFIIQCLNHSHQTLL 193

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +Q+++++ +++P+ + +    ++   +EHCFV   A + +   L+Q + ++ 
Sbjct: 194 FSATMPAAIQRLAKHHMKDPQEVNLILEQASPHLLEHCFVYCLA-HQRDHELIQLIKENN 252

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T    IIFC  +  V  +C +L+     V  +H  ++Q  R  + + F+ G I+L+VA+
Sbjct: 253 PT--QAIIFCQSRFQVEKVCRTLQSHLDGVDFLHAGLNQDIRTIVTNKFRTGKIRLLVAT 310

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ ARGLD   V HVF + + + ++ Y+HR GRTGR G+ G   +LV   ++ +++AI K
Sbjct: 311 DIVARGLDFSKVSHVFIYQLSHESDVYVHRSGRTGRYGKTGVVISLVTSRELPYLNAILK 370

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            I+++  W+        PP EK + A+    RK  P P K + 
Sbjct: 371 QIKQEPRWIGC------PPPEKQEAAK---PRKRRPYPNKKSS 404


>gi|310756762|gb|ADP20522.1| ATP-dependent RNA helicase DDX3X [Heterocephalus glaber]
          Length = 662

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 140/392 (35%), Positives = 218/392 (55%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 182 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 242 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 301

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 302 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 361

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 362 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 420

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + +   K + L  LL +       ++F   KK   +L   L ++G++  +IHG+  QR 
Sbjct: 421 -WVEDIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYREGYACTSIHGDRSQRD 479

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 480 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 539

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +     +     D ++ L+E K +   WL
Sbjct: 540 LATSFFNDRNANITKDLLDLLVEAKQEVPSWL 571


>gi|124801418|ref|XP_001349688.1| DEAD/DEAH box helicase, putative [Plasmodium falciparum 3D7]
 gi|3845295|gb|AAC71961.1| DEAD/DEAH box helicase, putative [Plasmodium falciparum 3D7]
 gi|156072124|gb|ABU45413.1| DEAD-box helicase 2 [Plasmodium falciparum]
          Length = 562

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 134/373 (35%), Positives = 213/373 (57%), Gaps = 18/373 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +  +++ ++ + G+ KPT IQ + +P    + D+ G+++TG+GKTA F++P+L  
Sbjct: 158 FEDLNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPILQD 217

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  +        L++ PTREL  Q++ NF+  G N  + +  + GG+    Q+  L + 
Sbjct: 218 LKVNKQSFY---ALVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSLNLAKK 274

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            +V++ TPGRILDH N  K   + N++ LV DEAD++L   F   I  +  ++P  R T 
Sbjct: 275 PNVIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINKLLLILPPNRITF 334

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT  + K+ +  L+NP ++EV+   ST  T+   ++    +Y  K   L  L   
Sbjct: 335 LFSATMTKNVAKLKKACLKNPVKVEVSNKYSTVSTLIETYIFLPLKY--KYTYLSSLCFH 392

Query: 242 QDTMKNGIIFCN-----QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             T +N IIF N     QK N    C +L   G     +HG + Q  R+  L++FK    
Sbjct: 393 YQT-RNIIIFTNTCATAQKLNF--FCRNL---GLKSICLHGKLTQNQRLSSLNSFKVNKY 446

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++++ + ARGLD+ D+  V NFD+ +  E YIHR+GRT RAGR GK+ T V + D+++
Sbjct: 447 NILISTQVGARGLDLQDIKIVINFDICSCKE-YIHRVGRTARAGRSGKSITFVTQYDVEN 505

Query: 357 IDAIEKLIEKKVD 369
             AIEK + KK+D
Sbjct: 506 FLAIEKQLNKKID 518


>gi|91179152|gb|ABE27760.1| pl10-like protein [Chlamys farreri]
          Length = 760

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 144/374 (38%), Positives = 212/374 (56%), Gaps = 24/374 (6%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-------------EKGR 67
           Y KPTP+Q  +IP+VL + D+   AQTG+GKTA+F++P+L  +             ++GR
Sbjct: 298 YTKPTPVQKYSIPIVLSKRDLMACAQTGSGKTAAFLVPVLNRVYDNGPGDIPTQNNQQGR 357

Query: 68  A--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
              R + P  LIL PTRELA+Q+ D   K+     +   ++ GG    AQ + L+RG  +
Sbjct: 358 YSRRKQYPVALILAPTRELASQIYDEARKFAYRSRVRPCVVYGGADIGAQIRDLDRGCHL 417

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---SLVPF-TRQTL 181
           L+ TPGR++D   RGK+ ++  + LV+DEADRM DMGF P I+ I    ++ P  TRQTL
Sbjct: 418 LVATPGRLVDMIERGKIGLDYCKFLVLDEADRMSDMGFEPQIRRIVEKDTMPPSGTRQTL 477

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT   E+Q ++ +FL N   + V    ST+E I    V    +  K+  LL  L  +
Sbjct: 478 MFSATSPKEIQILARDFLDNYIFLAVGRVGSTSENITQKVVWV-EEGDKRSFLLDLLNAA 536

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  + F   KK    L   L  +G+   +IHG+  Q+ R + L  F+ G   ++VA
Sbjct: 537 AGPEALTLTFVETKKGADALEDFLIVEGYPATSIHGDRSQKEREEALRQFRNGDRPILVA 596

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI-DAI 360
           + +AARGLDIP+V HV NFD+P+  E Y+HRIGRTGR G  G A +   +++   I D +
Sbjct: 597 TAVAARGLDIPNVRHVVNFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNKNIIRDLM 656

Query: 361 EKLIEKKVD---WL 371
           + L+E   +   WL
Sbjct: 657 DLLVEAHQEVPSWL 670


>gi|271967261|ref|YP_003341457.1| DEAD/DEAH box helicase [Streptosporangium roseum DSM 43021]
 gi|270510436|gb|ACZ88714.1| DEAD/DEAH box helicase domain-containing protein [Streptosporangium
           roseum DSM 43021]
          Length = 571

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 135/399 (33%), Positives = 210/399 (52%), Gaps = 10/399 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LGL   +V  +   G   P PIQ  TIP +L   DV G  QTG+GKT +F LPM+ 
Sbjct: 21  EFTLLGLPKPLVTGLSRQGIDSPFPIQSATIPDILAGSDVLGRGQTGSGKTLAFGLPMMA 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +   +AR   P  ++L PTRELA QV D  E  G+  +L +  ++GG+    Q + L R
Sbjct: 81  RIAGSKARPGRPLAVVLVPTRELAMQVTDALEPLGRGLSLRMKTVVGGMSMGRQIEALRR 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G +V++ TPGR+ D   +G+  ++ +++ ++DEAD M D+GF P +  I    P   Q L
Sbjct: 141 GVEVVVATPGRLTDLIQQGECTLDEVQVTILDEADHMCDLGFFPVVSAILQQTPADSQRL 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ K+   FL +P    +   +S+ +T+EH  +  +     K  +  ++   
Sbjct: 201 LFSATLDGDVDKLVRRFLTDPVTHSMAPVASSVDTMEHHVLEVH--RDDKFPVTAEIANR 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      IIF   +  V  LC  L + G     +HG   Q  R +IL+ FKEG I ++V 
Sbjct: 259 EGRT---IIFVRTQHGVDRLCKQLAQVGIKAGGLHGGKRQNQRTRILAEFKEGAINVLVC 315

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ + ++  V + D P   ++Y+HR GRT RAG  G   TLV   + +  DA+ 
Sbjct: 316 TDVAARGIHVDNISLVLHVDPPQDHKSYLHRGGRTARAGEKGTVMTLVLPNERRSTDAMT 375

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           +    K   L    +  +P LE++  A+        PIP
Sbjct: 376 RRAGIKPFRLK--ATPGHPRLEEVAGARQP---SGEPIP 409


>gi|225020696|ref|ZP_03709888.1| hypothetical protein CORMATOL_00703 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305679783|ref|ZP_07402593.1| putative DEAD-box ATP-dependent RNA helicase CshA [Corynebacterium
           matruchotii ATCC 14266]
 gi|224946642|gb|EEG27851.1| hypothetical protein CORMATOL_00703 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305660403|gb|EFM49900.1| putative DEAD-box ATP-dependent RNA helicase CshA [Corynebacterium
           matruchotii ATCC 14266]
          Length = 470

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 134/359 (37%), Positives = 208/359 (57%), Gaps = 10/359 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG++ ++  A+   G +    IQ +T+P+ L   D+ G A+TG GKT  F +P+L  
Sbjct: 12  FFELGVAIEITNALAQQGIIHTFAIQEQTLPIALDGRDIIGQARTGMGKTYGFGIPLLDR 71

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +        +   PR L++ PTRELA QV+ +  K      + V  + GG P + Q   L
Sbjct: 72  VFDAADIAELDGTPRALVVTPTRELAIQVSTDLTKAAMFTPIRVTTVYGGRPIDEQRAVL 131

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G DV++ TPGR+LD   RG L ++++ ILV+DEAD MLD+GF P ++ + + +    Q
Sbjct: 132 DDGVDVVVGTPGRLLDLHKRGILRLDHVAILVLDEADEMLDLGFFPDVEKLLAALTHRHQ 191

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T+LFSATM   +  ++  FL  P  I    V+ P +   T +  F + +      CA   
Sbjct: 192 TMLFSATMPGPVLTLAREFLHQPVHIRAENVDAPQTHTTTNQVVFQSHHLDKKATCA--- 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++LQ+ +  K  IIF   K++  +L   L K+GFSV A+HG++ Q +R   L+ F+   +
Sbjct: 249 KILQANNRGKT-IIFARTKRSAADLATDLAKRGFSVGAVHGDLGQAARETSLNAFRANRV 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++VA+D+AARG+D+ DV HV NF  P+    Y+HRIGRTGRAG  G A TLV  ++++
Sbjct: 308 DILVATDVAARGIDVDDVTHVINFQTPDDPMTYVHRIGRTGRAGHSGTAVTLVGYDELQ 366


>gi|19075356|ref|NP_587856.1| ATP-dependent RNA helicase Prp11 [Schizosaccharomyces pombe 972h-]
 gi|48474674|sp|Q9P7C7|PRP11_SCHPO RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp11
 gi|7380876|emb|CAB85446.1| ATP-dependent RNA helicase Prp11 [Schizosaccharomyces pombe]
          Length = 1014

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 129/370 (34%), Positives = 210/370 (56%), Gaps = 8/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GLS + +  +   GY KPT IQ + IP +    DV G+A+TG+GKT +F+LPM   
Sbjct: 420 WSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRH 479

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++  R       P  +I+ PTRELA Q+    + + K  N+      GG P + Q   L+
Sbjct: 480 IKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLK 539

Query: 121 RGADVLICTPGRILD--HFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  ++    LV+DEADRM D+GF P +  I + +   
Sbjct: 540 RGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPD 599

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA--TYAQYSKKCALL 235
           RQT+LFSAT    ++ ++   L+ P  I V   S  A  +E         +++S+   LL
Sbjct: 600 RQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLELL 659

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +L  +Q  ++  ++F +++++   L   L K+G++  +IHG  DQ  R   +S++K G 
Sbjct: 660 GELYNNQLDVRT-LVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGV 718

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +++A+ + ARGLD+  +  V N+D PN  E+Y+HR+GRTGRAG  G A T +  E  K
Sbjct: 719 FDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEK 778

Query: 356 HIDAIEKLIE 365
           +   I K ++
Sbjct: 779 YAVDIAKALK 788


>gi|327279490|ref|XP_003224489.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Anolis
           carolinensis]
          Length = 600

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 132/389 (33%), Positives = 213/389 (54%), Gaps = 19/389 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +      V+  +    +  PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 90  MNFYEANFPANVMEVIQRQNFTDPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 149

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +YG+   L    + GG P   
Sbjct: 150 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYGRACRLKSTCIYGGAPKGP 205

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 206 QIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 265

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQ-----NPKRIEVNTPSSTAETIEHCFVATYAQYS 229
              RQTL++SAT   E+++++E+FL+     N   +E++   +  + ++ C      +  
Sbjct: 266 RPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCH--DVEKDD 323

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K   L+++++  ++     I+F   K+   +L   + + G+    IHG+  Q+ R  +L+
Sbjct: 324 KLIRLMEEIMSEKENKT--IVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLN 381

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T  
Sbjct: 382 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFF 441

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
              +IK +  +  ++ +    +N  L  L
Sbjct: 442 TPNNIKQVSDLISVLREANQAINPKLLQL 470


>gi|213511116|ref|NP_001134430.1| eukaryotic initiation factor 4A-III [Salmo salar]
 gi|251764756|sp|B5DG42|IF4A3_SALSA RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|197631985|gb|ACH70716.1| eukaryotic translation initiation factor 4A isoform 3 [Salmo salar]
 gi|209733202|gb|ACI67470.1| Eukaryotic initiation factor 4A-III [Salmo salar]
          Length = 406

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 208/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 35  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQC 94

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 95  LD---IQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHSCIGGTNVGEDIRKLDYG 151

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q  L
Sbjct: 152 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCL 211

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 212 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 270

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 271 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 326

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 327 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 386

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 387 IEQYYSTQIDEMPMNVADL 405


>gi|154286484|ref|XP_001544037.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|160380603|sp|A6QUM7|DBP10_AJECN RecName: Full=ATP-dependent RNA helicase DBP10
 gi|150407678|gb|EDN03219.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 900

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 136/391 (34%), Positives = 216/391 (55%), Gaps = 38/391 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL+  ++ A+   G+  PTPIQ KTIPLVL   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 88  FQSLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEK 147

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q + +   
Sbjct: 148 LKSHSAKF-GSRALILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMASN 206

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 207 PDIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFATQLTEILHGLPSSRQTLL 266

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL------- 235
           FSAT+   L + +   LQ P  I ++  S  +  +++ F  T     K+ ALL       
Sbjct: 267 FSATLPKSLVEFARAGLQEPILIRLDAESKISPDLQNAFF-TVKSSEKEGALLHVLHEVI 325

Query: 236 -------QQLLQSQDTMKNG----------------------IIFCNQKKNVVNLCHSLE 266
                  + L ++++ +K+                       IIF   K +V  L   L 
Sbjct: 326 KIPTGETEALKRAKEEVKHSKKRKRSEVTSNSHKESPTEHSTIIFTATKHHVDYLTSILR 385

Query: 267 KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
             GF+V   +G++DQ +R   + NF++G   ++V +D+AARG+DIP + +V N+D P++ 
Sbjct: 386 TSGFAVSYAYGSLDQTARKIEVQNFRDGITHILVVTDVAARGIDIPILSNVINYDFPSQP 445

Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           + ++HR+GRT RAG+ G +++L+ + D  ++
Sbjct: 446 KIFVHRVGRTARAGKTGWSYSLIRESDTPYL 476


>gi|116191655|ref|XP_001221640.1| hypothetical protein CHGG_05545 [Chaetomium globosum CBS 148.51]
 gi|118575171|sp|Q2H720|DBP2_CHAGB RecName: Full=ATP-dependent RNA helicase DBP2
 gi|88181458|gb|EAQ88926.1| hypothetical protein CHGG_05545 [Chaetomium globosum CBS 148.51]
          Length = 562

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 127/363 (34%), Positives = 199/363 (54%), Gaps = 13/363 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 138 FDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 197

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 198 INAQPLLAPGDG----PIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGPQT 253

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 254 RDLSRGVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 313

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL-- 234
            RQT ++SAT   E++ ++ +FL +  ++ + +    A       V    +  K+  +  
Sbjct: 314 DRQTCMWSATWPKEVRALASDFLTDFIQVNIGSMDLAANHRITQVVEVVNESEKRDKMIK 373

Query: 235 -LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L+++++ +++    +IF   K+    +   L + G+   +IHG+  Q  R  +L  FK 
Sbjct: 374 HLEKIMEDKESQNKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKT 433

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +MVA+D+A+RG+D+ ++ HV N+D PN +E+YIHRIGRTGRAG  G A T    ++
Sbjct: 434 GKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDN 493

Query: 354 IKH 356
            K 
Sbjct: 494 SKQ 496


>gi|2231116|emb|CAA65745.1| heat resistant RNA dependent ATPase [Thermus thermophilus]
          Length = 510

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 145/395 (36%), Positives = 223/395 (56%), Gaps = 19/395 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F D  L P+++ A+   G   PTPIQ   +PL L+  D+ G A+TGTGKT +F LP+ 
Sbjct: 1   MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   + R R PR L+L PTRELA QVA          +L V  + GG  +  Q + L 
Sbjct: 61  ERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALL 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGAD ++ TPGR LD+  +G L ++ +E+ V+DEAD ML MGF   ++ + S  P +RQT
Sbjct: 119 RGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT+    ++++E +++NP  I V  + P +  E       A  A    +  +L  L
Sbjct: 179 LLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEEE------AVPAPVRGRLEVLSDL 232

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L    +    ++F   K     +   L + G    A+HG++ Q  R ++L  F++G +++
Sbjct: 233 LYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHLAQALHGDLSQGERERVLGAFRQGEVRV 291

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIP V  V ++ +P+RAE Y HR GRTGRAGR G+   L    + + ++
Sbjct: 292 LVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVE 351

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPL-EKIDIAQHNH 392
           A+E+ + ++          +NPP  E++  A+  H
Sbjct: 352 ALERAVGRR-------FKRVNPPTPEEVLEAKWRH 379


>gi|13514809|ref|NP_004651.2| ATP-dependent RNA helicase DDX3Y [Homo sapiens]
 gi|169881239|ref|NP_001116137.1| ATP-dependent RNA helicase DDX3Y [Homo sapiens]
 gi|73620957|sp|O15523|DDX3Y_HUMAN RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName: Full=DEAD
           box protein 3, Y-chromosomal
 gi|23273291|gb|AAH34942.1| DDX3Y protein [Homo sapiens]
 gi|119612016|gb|EAW91610.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_a
           [Homo sapiens]
 gi|119612017|gb|EAW91611.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_a
           [Homo sapiens]
          Length = 660

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 139/393 (35%), Positives = 221/393 (56%), Gaps = 25/393 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D+ +   ++  +    Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+
Sbjct: 179 NFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILS 238

Query: 62  -------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 239 QIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 298

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 299 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 358

Query: 167 IQNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 359 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 418

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             + +   K + L  +L +  +    ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 419 --WVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 476

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 477 DREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNL 536

Query: 343 GKAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
           G A +   ++++    D ++ L+E K +   WL
Sbjct: 537 GLATSFFNEKNMNITKDLLDLLVEAKQEVPSWL 569


>gi|17510559|ref|NP_490891.1| hypothetical protein Y71G12B.8 [Caenorhabditis elegans]
          Length = 763

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 140/385 (36%), Positives = 203/385 (52%), Gaps = 25/385 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  + LS +++ A   AGY  PTPIQ   IP+ L   D+C  A TGTGKTA+FVLP+L
Sbjct: 148 VSFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPIL 207

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          R L+L PTRELA QV   F K      L V L  GG+  +AQ   L 
Sbjct: 208 ERMIYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALR 267

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEI------------------------LVIDEA 155
            G DV++ TPGR++DH  N     ++NIE+                        LV+DEA
Sbjct: 268 SGPDVVVATPGRLIDHLHNSPSFNLSNIEVFFKTPNIPPKKNSRKICKIPNFQVLVLDEA 327

Query: 156 DRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
           DRML+  F   +  +  L    RQTLLFSATMT+E+ +++   LQ P +I +N  + TA 
Sbjct: 328 DRMLEEAFRDQMNELIRLCAQNRQTLLFSATMTEEIDELASMSLQKPVKIFINENTDTAL 387

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
            +   F+   A        +   L ++    N I+F   KK+   +   L   G  V  +
Sbjct: 388 KLRQEFIRIRAGRETDREAMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQM 447

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
             ++ Q  R++ LS FK+  I ++V++DLA+RGLDI  V  V N ++P   + YIHR+GR
Sbjct: 448 QSSLTQGQRIESLSKFKKAEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGR 507

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAI 360
           T RAG+ G++ +LV +++ K +  I
Sbjct: 508 TARAGKAGRSISLVGEDERKLLKEI 532


>gi|319411502|emb|CBQ73546.1| related to DRS1-RNA helicase of the DEAD box family [Sporisorium
           reilianum]
          Length = 932

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 142/384 (36%), Positives = 212/384 (55%), Gaps = 34/384 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F    LS  V+ A+    + KPTPIQ +TIP+ L   D+   A TG+GKTA+F++P L  
Sbjct: 335 FGAFSLSRPVLRALSSLSFHKPTPIQSRTIPIALAGKDIVAGAVTGSGKTAAFMIPTLER 394

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            T   KGRA+    R LIL PTRELA Q     +   K  ++   L +GG+  ++Q  +L
Sbjct: 395 LTWRAKGRAQEAKTRVLILAPTRELAIQCYSVGKSIAKFTDIRFCLCVGGLSVKSQEAEL 454

Query: 120 ERGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FT 177
           +   +V+I TPGR++DH  N     ++++EILV+DEADRML+ GF   +  I    P   
Sbjct: 455 KLRPEVVIATPGRLIDHVRNSASFTLDDVEILVMDEADRMLEDGFADELNEIVKSCPKGA 514

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV--------------- 222
           RQT+LFSATMTD+++++    L+ P R+ V+   +TA+ +   FV               
Sbjct: 515 RQTMLFSATMTDDVEQLVRLSLKRPVRLFVDPKRTTAKKLIQEFVRVRGSGPGGVAGADG 574

Query: 223 -------------ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269
                           ++ +++ ALL  L     T +  IIF   KK    L       G
Sbjct: 575 LAGVGDEPSTSTVGKRSEDAQRPALLLALCTRTFTSQV-IIFVRSKKLAHQLKIVFGLLG 633

Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329
            S   +HG++ Q  R+  L++F++G +  ++A+DLA+RGLDI  V  V N+D+P + E Y
Sbjct: 634 LSAGELHGDLSQEQRIDALTDFRDGKVDFLLATDLASRGLDIKGVQTVINYDMPGQFEAY 693

Query: 330 IHRIGRTGRAGRHGKAFTLVAKED 353
           +HR+GRT RAGR+G+A TLV + D
Sbjct: 694 LHRVGRTARAGRNGRAVTLVGEAD 717


>gi|170582680|ref|XP_001896237.1| CG10333-PA [Brugia malayi]
 gi|158596582|gb|EDP34904.1| CG10333-PA, putative [Brugia malayi]
          Length = 719

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 140/403 (34%), Positives = 211/403 (52%), Gaps = 46/403 (11%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + GL  +V   ++  GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 313 NWEEAGLPAEVFDVIMKIGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 372

Query: 62  ILEK------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +           +   P  +I+ PTRELA Q+ +   K+G+   +    +IGG   E Q
Sbjct: 373 WITSIPKFHGNDDQDTGPYAIIMAPTRELAQQIEEETVKFGQLLGIRTVSVIGGASREEQ 432

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL  G +V+I TPGR+LD      L ++    +++DEADRMLDMGF P +Q +   +P
Sbjct: 433 GLKLRLGVEVVIATPGRLLDVLENRYLSLDQCTYVILDEADRMLDMGFEPEVQKVLEYIP 492

Query: 176 FT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
            T                         RQT++F+ATM+  +++++  +L+ P  + + + 
Sbjct: 493 VTNLKPDTEEAEKEESIMENFYSKKKYRQTVMFTATMSPAIERLARAYLRRPAVVYIGSI 552

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               E +E   V    + SK+  L+ +L+ S       IIF NQK+    L   L K GF
Sbjct: 553 GRPTERVEQI-VYMIGEESKRKKLV-ELISSDAFEPPIIIFVNQKRGADMLAKGLTKLGF 610

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
             C +HG   Q +R   L+  K+GT  ++VA+D+A RG+DI DV  V N+D+    E+Y 
Sbjct: 611 QPCVLHGGKGQDAREYSLAALKDGTKDILVATDVAGRGIDIKDVSLVLNYDMAKSIEDYT 670

Query: 331 HRIGRTG------------RAGRHGKAFTLVAKEDIKH-IDAI 360
           HRIGRTG               R GK  T VA ED  H ID I
Sbjct: 671 HRIGRTGIKRNHKMVKLVSGISRKGKRLTNVAIEDYTHRIDRI 713


>gi|119191696|ref|XP_001246454.1| hypothetical protein CIMG_00225 [Coccidioides immitis RS]
 gi|118575169|sp|Q1EB38|DBP10_COCIM RecName: Full=ATP-dependent RNA helicase DBP10
          Length = 927

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 142/416 (34%), Positives = 221/416 (53%), Gaps = 41/416 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPLVL   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 83  FQAMGLNANLLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEK 142

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +V   R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 143 LKSHSTKV-GSRGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMAGN 201

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 202 PDIIIATPGRFLHLKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPQSRQTLL 261

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL--- 239
           FSAT+   L + +   LQ P  + ++T S  +  ++  F  T     K+ ALL  L    
Sbjct: 262 FSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQSVFF-TVKSAEKEGALLHILHDVI 320

Query: 240 ------------------------------------QSQDTMKNGIIFCNQKKNVVNLCH 263
                                               Q   T  + IIF   K +V  +  
Sbjct: 321 KVPTGETEAGKHAREQAISGKSSKKRKRSEQNNPNPQESPTEHSTIIFVATKHHVDYIAS 380

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
            L + GF+V   +G++DQ +R   +SNF+ G   ++V +D+AARG+DIP + +V N+D P
Sbjct: 381 LLRESGFAVSYAYGSLDQTARKIQVSNFRTGISNILVVTDVAARGIDIPILENVINYDFP 440

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           ++A+ ++HR+GRT RAGR G +++LV   D  ++  ++  + +++    G   S N
Sbjct: 441 SQAKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRRLVMGRGQQESAN 496


>gi|60417515|emb|CAI59960.1| ATP-dependent RNA helicase (DEAD/DEAH box family) [Listeria
           ivanovii]
          Length = 474

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 130/350 (37%), Positives = 199/350 (56%), Gaps = 17/350 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
           D  +L LS ++  A+ + GY + TP+Q + IP+ L   D+   +QTG+GKTA+F +P+  
Sbjct: 4   DMNNLNLSEEIKRAINELGYKEATPVQKEVIPVALTGKDIVAKSQTGSGKTAAFAIPIAE 63

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I E+ +     P+ LI+ PTRELA QV       G+   +  A + G  PF  Q  +L
Sbjct: 64  QVIWEENK-----PQALIIVPTRELAMQVKAECTNIGRFKRIKAAAIYGQSPFAKQKLEL 118

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   +++ TPGR+LDH  +G L ++ +  LV+DE D ML MGFI  +++I   +P  RQ
Sbjct: 119 SQKNHIVVGTPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLSMGFIDQVEDILQFLPKKRQ 178

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSATM +E+Q + + +  +P  IE+   +     I H  +    Q   K   LQ +L
Sbjct: 179 NLFFSATMPEEMQDLIKRYQDDPIVIEM--AAEKTNPITHIEM----QTENKEKTLQDVL 232

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++   + IIFCN K  V  L   L+    +   IHG + Q  R + + +FK G  + +
Sbjct: 233 ITENP-DSAIIFCNTKNQVDELSDLLQ---VNTAKIHGGLRQEERFRAMDDFKSGKSRFL 288

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +A+D+A RG+D+ +V  V N+D+P   ENY+HRIGRTGRAG  GKA + V
Sbjct: 289 IATDVAGRGIDVENVTLVINYDLPIEKENYVHRIGRTGRAGNSGKAISFV 338


>gi|326435254|gb|EGD80824.1| hypothetical protein PTSG_11725 [Salpingoeca sp. ATCC 50818]
          Length = 818

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 130/359 (36%), Positives = 208/359 (57%), Gaps = 10/359 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++D GY  PTPIQ KTIPL++   DV G+A+TG+GKTA+FV+PML  
Sbjct: 38  FQSMGLSRGVFRGIMDKGYKVPTPIQRKTIPLIIGGQDVVGMARTGSGKTAAFVIPMLEK 97

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+V + R L++ PTRELA Q     ++ G+  +L VAL++GG   + Q   +   
Sbjct: 98  LKSHSAKVGI-RALVMSPTRELAEQTFKFIKELGRRTDLRVALILGGDNMDDQFGWMHAN 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR L      +L +  +E +V DEAD++ + GF  +++ I   +P  RQTLL
Sbjct: 157 PDVIVATPGRFLHLLVEMELSLKAVEYVVFDEADQLFEKGFEEHLKEILMRLPEDRQTLL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE----HCFVATYAQYSKKCALLQQL 238
           FSAT+  +L + +   L+ P  + ++  +  +E +     HC  A      K   L+  L
Sbjct: 217 FSATLPKKLIEFARAGLKQPTLVRLDADTKLSEQLRTQYVHCRRA-----DKPAGLIYLL 271

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  K  ++F + K  +  L   LE         +GN+D  +R   ++ F+ G ++L
Sbjct: 272 TNVIPRGKLTVVFVSTKHLIEYLKVLLEALQIPCTYSYGNLDPTARKINIAKFRAGKVKL 331

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ +D+AARG+DIP + +V N+D P R + ++HR+GR  RAGR G A++LVA +++ H+
Sbjct: 332 LLVTDVAARGIDIPMLDYVVNYDFPRRPKLFVHRVGRVARAGRSGTAYSLVAVDEVAHL 390


>gi|293391078|ref|ZP_06635412.1| ATP-dependent RNA helicase RhlB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951612|gb|EFE01731.1| ATP-dependent RNA helicase RhlB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 418

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 134/367 (36%), Positives = 215/367 (58%), Gaps = 9/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FADL L P V+ A+ D G+   TPIQ  ++P+ L+  DV G AQTGTGKT +F+  +   
Sbjct: 11  FADLALHPLVLQALNDKGFDFCTPIQALSLPITLRDKDVAGQAQTGTGKTIAFLTALFHH 70

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +    +  V  PR LIL PTRELA Q+  + + + K      AL  GG  ++ Q K +E
Sbjct: 71  LLTYPKQTEVNQPRALILAPTRELAVQIEHDAQIFLKTTKFKTALAYGGDGYDKQLKAIE 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ- 179
            G DVLI T GR++D+  +G + ++ I+ +V+DEADRM D+GFI  I+ +    P  +Q 
Sbjct: 131 NGVDVLIGTTGRVIDYVRQGVIRLDQIQTVVLDEADRMFDLGFIRDIRYLLRKCPPPQQR 190

Query: 180 -TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237
            T+LFSAT++ ++++++   + +P+ +E+     T + I E  F  +    ++    L  
Sbjct: 191 LTMLFSATLSYKVRELAFEDMNSPEYVEIEPEQKTGQQIKEELFYPS----NRDKIPLLL 246

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G + 
Sbjct: 247 TLLEEEWPERCIVFANTKHKCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLD 306

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL I +V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   ++   ++
Sbjct: 307 ILVATDVAARGLHIAEVTHVFNYDLPDDREDYVHRIGRTGRAGESGISISFACEQYAMNL 366

Query: 358 DAIEKLI 364
            AIE+ I
Sbjct: 367 PAIEEYI 373


>gi|301602401|gb|ADK79106.1| vasa-like protein [Dicentrarchus labrax]
          Length = 637

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 132/359 (36%), Positives = 206/359 (57%), Gaps = 14/359 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 200 MTFDEAGLCESLRKTVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 259

Query: 61  T-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G A      ++ P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 260 QQLMADGVAASSFSELQEPEAVIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGH 319

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q +++ RG +VL  TPGR+LD   RGK+ ++ +   V+DEADRMLDMGF P ++ +    
Sbjct: 320 QIREISRGCNVLCGTPGRLLDVIGRGKVGLSKVRYFVLDEADRMLDMGFEPDMRRLVGSP 379

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +++Q+++ +FL+     + V         +E  FV    ++S
Sbjct: 380 GMPSKENRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFVQV-TKFS 438

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL  L  +   M+  ++F   K+    +   L ++     +IHG+ +QR R + L+
Sbjct: 439 KREQLLDLLKTT--GMERTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQREREQALA 496

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +F+ G   ++VA+ +AARGLDIPDV HV NFD+PN  + Y+HRIGRTGR G  G+A + 
Sbjct: 497 DFRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSF 555


>gi|159154994|gb|AAI54494.1| LOC556764 protein [Danio rerio]
          Length = 519

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 205/374 (54%), Gaps = 11/374 (2%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEK 65
           V+  +L   + +PT IQ +  PL L   D+ GIAQTG+GKT +++LP +        LE+
Sbjct: 106 VIDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER 165

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
           G      P  L+L PTRELA QV      YGK+  +    + GG P   Q + LERG ++
Sbjct: 166 GDG----PICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERGVEI 221

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
            I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL++SA
Sbjct: 222 CIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 281

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           T   E+++++E+FLQ+  +I +     +A       V    +  K   L+Q + +     
Sbjct: 282 TWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAEK 341

Query: 246 KN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
           +N  IIF   KK    L   + + G+    IHG+  Q  R  +L+ F+ G   +++A+D+
Sbjct: 342 ENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDV 401

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     +++    + +++
Sbjct: 402 ASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQARDLVRVL 461

Query: 365 EKKVDWLNGDLSSL 378
           E+    +N  L  L
Sbjct: 462 EEARQAINPKLLQL 475


>gi|71001454|ref|XP_755408.1| RNA helicase (Dbp) [Aspergillus fumigatus Af293]
 gi|66853046|gb|EAL93370.1| RNA helicase (Dbp), putative [Aspergillus fumigatus Af293]
 gi|159129480|gb|EDP54594.1| RNA helicase (Dbp), putative [Aspergillus fumigatus A1163]
          Length = 565

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 136/392 (34%), Positives = 209/392 (53%), Gaps = 30/392 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F + G    V+  V   G+ +PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 122 NFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 181

Query: 62  ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                 +L  G      P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q
Sbjct: 182 HINAQPLLAPGDG----PIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQ 237

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S + 
Sbjct: 238 IRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIR 297

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT ++SAT   E+++++ +FL +  ++ + +   +A       V   + + K+  ++
Sbjct: 298 PDRQTCMWSATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMI 357

Query: 236 QQLLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + L +  +   N  +IF   K+    +   L + G+   +IHG+  Q+ R  +L+ FK G
Sbjct: 358 KHLEKIMENRSNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTG 417

Query: 295 TIQLMVASDLAARGL------------------DIPDVGHVFNFDVPNRAENYIHRIGRT 336
              +MVA+D+A+RG+                  D+ D+ HV N+D PN +E+YIHRIGRT
Sbjct: 418 KSPIMVATDVASRGIGLVAIFTNALFANLNLFKDVRDITHVLNYDYPNNSEDYIHRIGRT 477

Query: 337 GRAGRHGKAFTLVAKEDIKHI-DAIEKLIEKK 367
           GRAG  G A T    E+ K   D +  L E K
Sbjct: 478 GRAGAKGTAITFFTTENSKQARDLVTILTEAK 509


>gi|124267364|ref|YP_001021368.1| ATP-independent RNA helicase [Methylibium petroleiphilum PM1]
 gi|124260139|gb|ABM95133.1| ATP-independent RNA helicase [Methylibium petroleiphilum PM1]
          Length = 473

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 211/381 (55%), Gaps = 10/381 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ L L+P V+  +   GY   TP+Q  T+P+ L   D+   A+TG+GKTA+F L +L
Sbjct: 16  LPFSQLPLAPAVLANLEQLGYHSMTPVQAATLPIALAGRDLIAQAKTGSGKTAAFALALL 75

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L+  R  V+   +L+L PTRELA QV     +  ++  N  +  L GG     Q   L
Sbjct: 76  ARLDPRRLDVQ---SLVLCPTRELADQVTQELRRLARSQENTKILTLCGGATMRPQLASL 132

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGRI+DH  RG L + ++  LV+DEADRMLDMGF   I  +    P  RQ
Sbjct: 133 QHGAHIVVGTPGRIIDHLERGSLALASLNTLVLDEADRMLDMGFFDDIAAVARHCPPQRQ 192

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  D + ++S  FL+ P+ + + +     +  +  +  T  Q      LL    
Sbjct: 193 TLLFSATYPDGIARLSAQFLRQPEHVRLESQQDAGKIRQRFYEVTEEQRLHAVGLLLDHF 252

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   T+     FCN K+   +L   L  QG    A+HG+++QR R ++L  F   +  ++
Sbjct: 253 RPASTLA----FCNTKQQCRDLVAVLSAQGVQALALHGDLEQRERDQVLMQFANRSCSVL 308

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +  V N D+    E +IHRIGRTGRA + G A +L   +++  +  
Sbjct: 309 VATDVAARGLDVEQLEAVVNVDISPDPEVHIHRIGRTGRADQAGWALSLATLDEMPSVAK 368

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           I++L +++ +W    LS L P
Sbjct: 369 IDQLQDRESEW--HPLSELTP 387


>gi|170053024|ref|XP_001862487.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus]
 gi|167873709|gb|EDS37092.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus]
          Length = 935

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 135/360 (37%), Positives = 203/360 (56%), Gaps = 5/360 (1%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--EKGRAR 69
           V+  +   G+  PT IQ +  P+ L   D+ GIAQTG+GKT +++LP +  +  +K   R
Sbjct: 264 VINEINKQGFPSPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYMLPAIVHIAHQKPLQR 323

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKKLERGADVLI 127
              P  L+L PTRELA Q+      +G +   N+    + GG     Q + LERG +V+I
Sbjct: 324 GDGPIVLVLAPTRELAQQIQTVVRDFGTHSKPNIRYTCIFGGALKGPQVRDLERGVEVVI 383

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   RQ L++SAT 
Sbjct: 384 ATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATW 443

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ-SQDTMK 246
             E+Q ++E+FL +  +I V + + +A    H  V    +  K+  LL  L + + D   
Sbjct: 444 PKEVQALAEDFLHDYIQINVGSLNLSANHNIHQIVDICEENEKEGKLLSLLKEIASDVNN 503

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             IIF   KK V +L  ++ + G+   +IHG+  Q  R  +L +F+ G   ++VA+D+AA
Sbjct: 504 KIIIFVETKKKVEDLLKNIVRDGYGATSIHGDKSQSERDYVLQDFRHGKSTILVATDVAA 563

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLD+ DV +V NFD PN +E+YIHRIGRTGR    G A+T     + +    +  ++E+
Sbjct: 564 RGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCSSFGTAYTFFTPGNGRQARELLSVLEE 623


>gi|50310213|ref|XP_455126.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660335|sp|Q6CLR3|DED1_KLULA RecName: Full=ATP-dependent RNA helicase DED1
 gi|49644262|emb|CAG97833.1| KLLA0F01034p [Kluyveromyces lactis]
          Length = 627

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 142/368 (38%), Positives = 206/368 (55%), Gaps = 26/368 (7%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML------- 60
           L P ++  +  A + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L       
Sbjct: 166 LDPLLLDNIKLARFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESFSSG 225

Query: 61  ---TILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
              T    G + ++   P  +IL PTRELA Q+ D  +K+     +   ++ GG   + Q
Sbjct: 226 PASTPEAAGNSYIKKVYPTAVILAPTRELATQIYDEAKKFTYRSWVKPMVVYGGASIDNQ 285

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT--SL 173
            K++  G ++L+ TPGR+ D   R  + + N++ LV+DEADRMLDMGF P I+ I   S 
Sbjct: 286 IKQMRYGCNLLVATPGRLTDLLERRYISLANVKYLVLDEADRMLDMGFEPQIRRIVEGSD 345

Query: 174 VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +P    RQTL+FSAT   E+Q ++ +FL++   + V    ST+E I    +     + K 
Sbjct: 346 MPSVDNRQTLMFSATFPSEIQHLASDFLKDYVFLSVGRVGSTSENITQKILYV-EDFDKN 404

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL  L  S + +   +IF   K+   +L   L  +GF   AIHG+  Q  R + LS F
Sbjct: 405 DTLLDLLAASNEGLT--LIFVETKRAADSLTDFLIMEGFKATAIHGDRTQGERERALSAF 462

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL--- 348
           K G   ++VA+ +AARGLDIP+V HV NFD+PN  ++Y+HRIGRTGRAG  G A T    
Sbjct: 463 KTGRATILVATAVAARGLDIPNVTHVINFDLPNDIDDYVHRIGRTGRAGNTGVATTFFNR 522

Query: 349 ----VAKE 352
               VAKE
Sbjct: 523 GNKNVAKE 530


>gi|299470469|emb|CBN78461.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 1012

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 214/379 (56%), Gaps = 36/379 (9%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI---LE 64
           L   V+ A+ + GY KP+PIQ + IP+ ++R D+ GIA+TG+GKTA+F +PM+     LE
Sbjct: 583 LPSSVMEAIRELGYEKPSPIQRQAIPIGMERRDIIGIAETGSGKTAAFGIPMIAYILSLE 642

Query: 65  KG-RARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            G R RV  + P  LI+ PTRELA Q+ +  +K+ K   L    ++GG   EAQ   L +
Sbjct: 643 AGMRDRVADQGPLALIMAPTRELAIQIEEECKKFCKFAGLNTVCVVGGQDIEAQAFTLRK 702

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF------------------ 163
           G +++I TPGR+ D   +  L++N    +V+DEADRM+DMGF                  
Sbjct: 703 GVEIIIGTPGRLNDCVEKHYLVLNQCNYVVLDEADRMIDMGFEDQVLAVLEAMGGTLKAD 762

Query: 164 ---IPYIQN-----ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV-NTPSSTA 214
              + Y Q        S     R T +FSATM   ++K+++ +L++P  +++ +  +   
Sbjct: 763 DAELAYKQEKKAKQARSAADLVRVTAMFSATMPAAVEKMAKKYLRHPAIVQIGDEDTGKN 822

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
             IE   +  +   ++K   + +LL+  D     ++F N KK+   L   LE+ GF    
Sbjct: 823 RRIEQRVL--WMTEAQKKTKVTELLRGHDKEDRVLVFINTKKSADMLGRQLEQAGFPTGV 880

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG   Q  R + L +F++G   ++VA+D+A+RGLDIPDV  V N+++PN+ E Y HRIG
Sbjct: 881 LHGGKTQDQREENLESFRDGDYTVLVATDVASRGLDIPDV-KVINYELPNKIETYCHRIG 939

Query: 335 RTGRAGRHGKAFTLVAKED 353
           RTGRAG+ G A + + + D
Sbjct: 940 RTGRAGKDGVATSFLTEHD 958


>gi|156037652|ref|XP_001586553.1| hypothetical protein SS1G_12540 [Sclerotinia sclerotiorum 1980]
 gi|160380650|sp|A7F4L5|DRS1_SCLS1 RecName: Full=ATP-dependent RNA helicase drs1
 gi|154697948|gb|EDN97686.1| hypothetical protein SS1G_12540 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 801

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 136/362 (37%), Positives = 201/362 (55%), Gaps = 3/362 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  ++  +   G+ +PTPIQ KTIP+ L   DV G A TG+GKTA+F++P+L  
Sbjct: 270 FQSMSLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFIVPVLER 329

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q      K   + ++   L +GG+  + Q  +L   
Sbjct: 330 LLYRPKKVPTSRVAILMPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQEAELRLR 389

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 390 PDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEAGFADELNEILTTIPKSRQTM 449

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATM+  +  +    L  P R+ V++  STA T+   F+     +  K+   L  L  
Sbjct: 450 LFSATMSSSVDNLIRVGLNRPVRLLVDSQKSTAGTLTQEFIRLRPGREGKRMGYLLYLCA 509

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  T +  I+F  QKK            G     +HG++ Q  R+K +  F++G    ++
Sbjct: 510 NVYTDRV-IVFFRQKKEAHRARIIFGLSGLKATELHGSMSQEQRIKSVEAFRDGKASFLL 568

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLDI  V  V N++ P   + Y+HR+GRT RAGR G+A T+ A+ D K + A 
Sbjct: 569 ATDLASRGLDIKGVDTVINYEAPQSHDIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAA 628

Query: 361 EK 362
            K
Sbjct: 629 VK 630


>gi|193641157|ref|XP_001946607.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like
           [Acyrthosiphon pisum]
          Length = 721

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 127/382 (33%), Positives = 209/382 (54%), Gaps = 34/382 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           + +  +  +++  +   GY +PTPIQ + IP+  Q  D+ G+A+TG+GKT ++++P+   
Sbjct: 294 WKESTIKSEIMEIIEKVGYKEPTPIQRQAIPIGFQNRDIIGVAETGSGKTLAYLIPLIEW 353

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
              L  +E+     + P ++IL PTRELA Q+ +   K+G+   +   +++GG+  E Q 
Sbjct: 354 IQSLPKMEREEDVDQGPYSIILAPTRELAQQIEEETLKFGQPLGIRTVVVVGGLSREEQG 413

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 414 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 473

Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           T                         RQT++F+ATM   +++++  +L+ P  + + +  
Sbjct: 474 TNLKPDNEDAEDESKLLANYYTKKKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSIG 533

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
              E  E   V   ++  K+  L++ L +  D     IIF NQKK    L   LEK G++
Sbjct: 534 KPVERTEQ-IVHMMSENDKRKRLIEILSRKVDP--PIIIFVNQKKGADVLAKGLEKLGYN 590

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
            C +HG   Q  R   L++ K G   ++VA+D+  RG+DI DV  V N+D+    E+Y H
Sbjct: 591 ACTLHGGKGQEQREFALASLKGGVKDILVATDVVGRGIDIKDVSMVINYDMAKSIEDYTH 650

Query: 332 RIGRTGRAGRHGKAFTLVAKED 353
           RIGRTGRAG+ G A + + K+D
Sbjct: 651 RIGRTGRAGKTGVAISFLTKDD 672


>gi|71019993|ref|XP_760227.1| hypothetical protein UM04080.1 [Ustilago maydis 521]
 gi|74701057|sp|Q4P733|DED1_USTMA RecName: Full=ATP-dependent RNA helicase DED1
 gi|46099796|gb|EAK85029.1| hypothetical protein UM04080.1 [Ustilago maydis 521]
          Length = 672

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 147/391 (37%), Positives = 216/391 (55%), Gaps = 31/391 (7%)

Query: 9   SPKVVCAVLD----AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL- 63
           SP +   +L+    A Y  PTP+Q  +IP++    D+ G AQTG+GKT  F+ P+L+ L 
Sbjct: 193 SPPIDAHLLENIKLARYTNPTPVQKYSIPIIKLGRDLMGCAQTGSGKTGGFLFPILSALF 252

Query: 64  -------------EKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                        + G  R +  P TLIL PTREL +Q+ D   K+     +  A++ GG
Sbjct: 253 THGPPPPSAAEMAQGGYNRRKAYPSTLILAPTRELVSQIHDEARKFTYRSWVKPAVVYGG 312

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q +++ERG D+L  TPGR++D   RG++ ++N+  LV+DEADRMLDMGF P I+ 
Sbjct: 313 ADIVTQLRQIERGCDLLSATPGRLVDLMERGRISLSNVRFLVLDEADRMLDMGFEPQIRR 372

Query: 170 ITSL--VP--FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I     +P    RQTL+FSAT   ++Q ++++FL+    + V    ST+E I       Y
Sbjct: 373 IVEGEDMPGVMDRQTLMFSATFPRDIQLLAKDFLKEYVFLSVGRVGSTSENITQKI--EY 430

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            +   K ++L  +L S  +    +IF   K+    L   L +      +IHG+  QR R 
Sbjct: 431 VEDDDKRSVLLDVLASMPSGGLTLIFVETKRMADMLSDFLLRSKIGATSIHGDRTQRERE 490

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR--HG 343
           + L  F+ G   +MVA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG   H 
Sbjct: 491 RALELFRSGKTPIMVATAVAARGLDIPNVTHVVNYDLPSDVDDYVHRIGRTGRAGNVGHA 550

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVD---WL 371
            AF     ++I   D IE L E   +   WL
Sbjct: 551 TAFFNRGNKNIVR-DLIELLKEANQEVPQWL 580


>gi|254491400|ref|ZP_05104579.1| DbpA RNA binding domain family [Methylophaga thiooxidans DMS010]
 gi|224462878|gb|EEF79148.1| DbpA RNA binding domain family [Methylophaga thiooxydans DMS010]
          Length = 460

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 144/392 (36%), Positives = 216/392 (55%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS   + A+   GY   T IQ +++P +L+ +D+   A+TG+GKTA+F    + +
Sbjct: 6   FRSLQLSKAQLDALDSLGYESMTAIQAQSLPEILKGNDLIAQAKTGSGKTAAF---GIGL 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L+K   R    + L+L PTRELA QV     K  +   N+ + +L GG P   Q   LE 
Sbjct: 63  LQKLNPRFFGAQALVLCPTRELAEQVGKEIRKLARFMPNIKLVMLCGGKPIGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  +  L ++ +  LV+DEADRMLDMGF   +Q I    P  RQTL
Sbjct: 123 GAHIVVGTPGRVQDHLRKNTLKLDGLTTLVLDEADRMLDMGFADAMQAIIGQTPKNRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D +Q +S    +NP  + V       E I+  F    +++ +  ALL      
Sbjct: 183 LFSATYPDTIQHMSRQIQRNPVTVTVEA-EHNKEVIQQVFYEV-SKHDRNTALLSLFAHY 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   +  ++FC+ KK   ++   L  +     AIHG++DQR R ++L  F   +  ++VA
Sbjct: 241 QP--ETCVVFCHTKKQCDDVADFLNNEQIDALAIHGDLDQRDRDQVLVRFANNSCPVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N+++P   E Y+HRIGRTGRAG+ G A ++V   +   I AIE
Sbjct: 299 TDVAARGLDIKALQMVINYELPRDPEVYVHRIGRTGRAGQTGLAMSIVTPNETPRILAIE 358

Query: 362 KLIEK-----KVDWLNGDLS-SLNPPLEKIDI 387
           +   +     ++  LN ++  SL  P+  I I
Sbjct: 359 EYSNRPCPCDELTLLNNNVDFSLQAPMATIQI 390


>gi|195069805|ref|XP_001997032.1| GH23229 [Drosophila grimshawi]
 gi|193906224|gb|EDW05091.1| GH23229 [Drosophila grimshawi]
          Length = 649

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 130/355 (36%), Positives = 207/355 (58%), Gaps = 7/355 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G   +++ +V  A Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ P+LT 
Sbjct: 294 FGHFGFDDQLLKSVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPLLTH 353

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   R  +R    P  LIL PTREL+ Q+ +  +K+GK YN+ V    GG     Q+K L
Sbjct: 354 LMDQR-ELRPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSKAL 412

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G ++++ TPGR++D        +  +  LV+DEADRM  MGF P +++I + V   RQ
Sbjct: 413 EQGCEIVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQ 472

Query: 180 TLLFSATMTDELQKVSENFLQNPKRI-EVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           TLLFSAT    +++++ + L +P RI + +   +  +  +H +V  +    +K   L   
Sbjct: 473 TLLFSATFKKRIERLARDILTDPVRIVQGDLNEANQDITQHVYV--FPNPLQKWNWLLCH 530

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L    +    ++F  +K +   + ++L  +  +   +HG++DQ  R K++  FK     +
Sbjct: 531 LVKFLSEGGVLVFVTKKADAETVSNNLLLKEHNCLLLHGDMDQADRNKVIMQFKRKECDI 590

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +VA+D+AARGLDIP + +V N+D+    + + HRIGRTGRAG  G A+TLV  +D
Sbjct: 591 LVATDVAARGLDIPHIRNVINYDIARDIDTHTHRIGRTGRAGEKGNAYTLVTDKD 645


>gi|169145046|emb|CAQ08925.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
          Length = 652

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 137/383 (35%), Positives = 213/383 (55%), Gaps = 22/383 (5%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 100 PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 159

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 160 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQ 237
           +SAT   E+++++E+FL++  +I V     +A     + ++ C  +   +  K   L+++
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMES--EKDHKLIQLMEE 333

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   
Sbjct: 334 IMAEKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAP 391

Query: 298 LMVASDLAARGLD--IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +++A+D+A+RGL   + DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K
Sbjct: 392 ILIATDVASRGLGLYVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLK 451

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
               + K++E+    +N  L  L
Sbjct: 452 QARELIKVLEEANQAINPKLMQL 474


>gi|169860811|ref|XP_001837040.1| ATP-dependent RNA helicase FAL1 [Coprinopsis cinerea okayama7#130]
 gi|116501762|gb|EAU84657.1| ATP-dependent RNA helicase FAL1 [Coprinopsis cinerea okayama7#130]
          Length = 396

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 202/370 (54%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++  +    + KP+ IQ + I  ++Q  DV   AQ+GTGKTA+F    ++I
Sbjct: 25  FDDLGLKEDLLRGIYAYNFEKPSAIQQRAILPIIQGRDVIAQAQSGTGKTATF---SISI 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     VR  + L+L PTRELA Q+       G   N+     IGG       +KLE G
Sbjct: 82  LQSIDVTVRETQALVLSPTRELATQIQSVILALGDYMNVQCHACIGGTSIGEDIRKLEYG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I ++   +P   Q +L
Sbjct: 142 QHVVSGTPGRVFDMIRRRSLRTRNIKMLVLDEADELLNKGFKDQIYDVYRYLPPATQVVL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 202 LSATLPYDVLEMTTKFMTDPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTL- 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   +    F+V ++HG + Q+ R  I++ F+ GT +++
Sbjct: 261 ----TITQAVIFCNTRRKVDWLTEKMRASNFTVSSMHGEMVQKERDAIMAEFRSGTSRVL 316

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 317 ITTDVWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTVEDVRILRD 376

Query: 360 IEKLIEKKVD 369
           IE+    ++D
Sbjct: 377 IEQFYGTQID 386


>gi|330803884|ref|XP_003289931.1| hypothetical protein DICPUDRAFT_154383 [Dictyostelium purpureum]
 gi|325079973|gb|EGC33549.1| hypothetical protein DICPUDRAFT_154383 [Dictyostelium purpureum]
          Length = 501

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 134/375 (35%), Positives = 218/375 (58%), Gaps = 9/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL+P ++ +     +  P+ IQ  TIP ++   D+   A+TG+GKTASF +P+L +
Sbjct: 7   FESLGLAPWLIRSCKQLNFKNPSNIQYNTIPEIINGRDIIASAKTGSGKTASFAIPILNL 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    V     ++L PTRELA Q+A+ F   G   N+ V+ +IGGI    Q   L++ 
Sbjct: 67  LSEDPYGVF---AVVLTPTRELAVQIAEQFSAIGAPMNVQVSTVIGGIDTVKQALILDKR 123

Query: 123 ADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTRQ 179
             +++ TPGR+  H   G K+ +   + LV+DEADR+L   F   I +I   +P    RQ
Sbjct: 124 PHIIVATPGRLASHLTNGLKIALKFCKFLVLDEADRLLGEDFELEIASILEYLPPPTQRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATMT+ L+K+    L +P   E N+   T +T++  ++   AQ +K C L+   L
Sbjct: 184 TLLFSATMTNNLKKLESISLNSPFIFEDNSKYDTVDTLKQEYIYMPAQ-AKDCYLV--YL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ I+F N   +V  +   L K      ++H  +DQ++R+  L  FK G ++++
Sbjct: 241 LKKHIGQSVIVFINNCYSVEAVKGMLNKLDIPAVSLHSFLDQKARLSALKVFKSGKVKVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLDIPDV  V N+ + N +++YIHR+GRT R G+ G+A + +   D++ I  
Sbjct: 301 IATDVASRGLDIPDVEMVINYKLSNSSKDYIHRVGRTARFGKSGRAISFITPHDVQLIKN 360

Query: 360 IEKLIEKKVDWLNGD 374
           IE +I+K+++    D
Sbjct: 361 IELVIKKELELYKTD 375


>gi|320036334|gb|EFW18273.1| ATP-dependent RNA helicase DBP10 [Coccidioides posadasii str.
           Silveira]
          Length = 927

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 142/416 (34%), Positives = 221/416 (53%), Gaps = 41/416 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPLVL   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 83  FQAMGLNANLLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEK 142

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +V   R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 143 LKSHSTKV-GSRGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMAGN 201

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 202 PDIIIATPGRFLHLKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPQSRQTLL 261

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL--- 239
           FSAT+   L + +   LQ P  + ++T S  +  ++  F  T     K+ ALL  L    
Sbjct: 262 FSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQSVFF-TVKSAEKEGALLHILHDVI 320

Query: 240 ------------------------------------QSQDTMKNGIIFCNQKKNVVNLCH 263
                                               Q   T  + IIF   K +V  +  
Sbjct: 321 KVPTGETEAGKRAKELAISGKSSKKRKRSEQNNPNPQESPTEHSTIIFVATKHHVDYVAS 380

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
            L + GF+V   +G++DQ +R   +SNF+ G   ++V +D+AARG+DIP + +V N+D P
Sbjct: 381 LLRESGFAVSYAYGSLDQTARKIQVSNFRTGISNILVVTDVAARGIDIPILENVINYDFP 440

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           ++A+ ++HR+GRT RAGR G +++LV   D  ++  ++  + +++    G   S N
Sbjct: 441 SQAKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRRLVMGRGQQESAN 496


>gi|303313411|ref|XP_003066717.1| ATP-dependent RNA helicase DBP10, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240106379|gb|EER24572.1| ATP-dependent RNA helicase DBP10, putative [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 936

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 142/416 (34%), Positives = 221/416 (53%), Gaps = 41/416 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPLVL   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 92  FQAMGLNANLLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEK 151

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +V   R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 152 LKSHSTKV-GSRGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMAGN 210

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 211 PDIIIATPGRFLHLKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPQSRQTLL 270

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL--- 239
           FSAT+   L + +   LQ P  + ++T S  +  ++  F  T     K+ ALL  L    
Sbjct: 271 FSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQSVFF-TVKSAEKEGALLHILHDVI 329

Query: 240 ------------------------------------QSQDTMKNGIIFCNQKKNVVNLCH 263
                                               Q   T  + IIF   K +V  +  
Sbjct: 330 KVPTGETEAGKRAKELAISGKSSKKRKRSEQNNPNPQESPTEHSTIIFVATKHHVDYVAS 389

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
            L + GF+V   +G++DQ +R   +SNF+ G   ++V +D+AARG+DIP + +V N+D P
Sbjct: 390 LLRESGFAVSYAYGSLDQTARKIQVSNFRTGISNILVVTDVAARGIDIPILENVINYDFP 449

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           ++A+ ++HR+GRT RAGR G +++LV   D  ++  ++  + +++    G   S N
Sbjct: 450 SQAKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRRLVMGRGQQESAN 505


>gi|218675982|ref|YP_002394801.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
           LGP32]
 gi|218324250|emb|CAV25533.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
           LGP32]
          Length = 447

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 132/388 (34%), Positives = 209/388 (53%), Gaps = 10/388 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + K T IQ K IP+ +   D+   ++TG+GKT +FVLPM+
Sbjct: 5   LHFKDLGLDNRLLKNLKHYDFKKATEIQSKAIPVAIAGKDLLASSKTGSGKTLAFVLPMI 64

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   + PR +IL PTRELA QV           +    L++GG  F  Q K L
Sbjct: 65  HKALKTKAFSAKDPRGVILAPTRELAKQVYGELRSMLGGLSYEATLILGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            +    ++ TPGR+ DH     L ++ +E L++DEADRMLD+GF P ++ I +     R 
Sbjct: 125 RKYPRFIVATPGRLADHLEHRSLFLDGVETLILDEADRMLDLGFAPELRRIANAAKHRRR 184

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+   E+  ++   L +PKRI V   +     I   F         K A+L +
Sbjct: 185 QTLMFSATLDHAEVNDIANEMLDSPKRISVGVSNEQHLDITQKFYLC-DHLDHKEAILDR 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++  +  +  +IF   + +   L   L ++     A+ GN++Q  R  I+S F+    +
Sbjct: 244 VIEEAE-YRQVMIFTATRADTDRLTEKLNEKKLKAVALSGNLNQTQRNAIMSQFERAVYK 302

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RG+DIP+V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D    
Sbjct: 303 ILVTTDVASRGIDIPNVSHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSF 362

Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNP 380
             +E  +++ + +     L G    + P
Sbjct: 363 KRVELYLQQDLTFSVLEGLKGKFKGIKP 390


>gi|195115577|ref|XP_002002333.1| GI13281 [Drosophila mojavensis]
 gi|193912908|gb|EDW11775.1| GI13281 [Drosophila mojavensis]
          Length = 649

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 125/345 (36%), Positives = 208/345 (60%), Gaps = 8/345 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKG 66
           L   V+  V+ +GYV PTPIQ  +IP++ +  D+   AQTG+GKTA+F+LP+L+ IL++ 
Sbjct: 242 LRGSVLENVVKSGYVVPTPIQKVSIPVIAEGRDLMACAQTGSGKTAAFLLPILSNILDES 301

Query: 67  RA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
               +  P+ +I+ PTRELA Q+ +   K+  +  L ++++ GG  F+ QN+ + +G  V
Sbjct: 302 HDLEIGKPQAVIVSPTRELAIQIFNEARKFAYSTYLKISIVYGGTSFKYQNECITKGCHV 361

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT--SLVPFTRQTLLF 183
           LI TPGR+LD  +R  +  N+   +V+DEADRMLDMGF   ++ I     +    QTL+F
Sbjct: 362 LIATPGRLLDFVDRTFITFNDTRFVVLDEADRMLDMGFSDSMRKIMHHQTMRAEHQTLMF 421

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT  +E+Q+++  FL+N   + +         ++   +    +++K+  L++ L +  D
Sbjct: 422 SATFPEEIQRMAGEFLRNYVFVTIGVVGGACSDVQQT-IYEVNKFNKRSKLMEILREGAD 480

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
                I+F   K+    L     +  F   +IHG+  Q  R + L +FK GT+++++A+ 
Sbjct: 481 GT---IVFVETKRAADFLASFFSETEFPTTSIHGDRLQSQREQALRDFKNGTMKVLIATS 537

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +A+RGLDI +V HV N+D+P+  ++Y+HRIGRTGR G  G+A + 
Sbjct: 538 VASRGLDIKNVKHVINYDMPSNIDDYVHRIGRTGRVGNSGRATSF 582


>gi|297828467|ref|XP_002882116.1| hypothetical protein ARALYDRAFT_483908 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327955|gb|EFH58375.1| hypothetical protein ARALYDRAFT_483908 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 739

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 130/337 (38%), Positives = 196/337 (58%), Gaps = 3/337 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D G S +++ A+    Y KPT IQ + +P+VL   DV GIA+TG+GKTA+FVLPM+  
Sbjct: 231 FEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVH 290

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++    +   P  +I  PTRELA Q+    +K+ K Y L V+ + GG+    Q K+L+
Sbjct: 291 IMDQPELQKDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELK 350

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G ++++ TPGR++D      L M     LV+DEADRM D+GF P +++I   +   RQT
Sbjct: 351 AGCEIVVATPGRLIDMLKIKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQT 410

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  +++K++   L +P R+ V       E I        +   K   LL++L  
Sbjct: 411 LLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEKLPG 470

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D   + ++F ++K  V  +   L    F V A+HG+ DQ SRM+ L  FK G   +++
Sbjct: 471 MIDE-GDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGIYHVLI 529

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           A+D+AARGLDI  +  V N+D+    + ++HRIGRTG
Sbjct: 530 ATDVAARGLDIKSLKTVVNYDIARDMDMHVHRIGRTG 566


>gi|258573243|ref|XP_002540803.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237901069|gb|EEP75470.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 937

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 134/394 (34%), Positives = 215/394 (54%), Gaps = 41/394 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ ++   G+  PTPIQ KTIPLVL   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 92  FQAMGLNATLLKSITRKGFSVPTPIQRKTIPLVLDEQDVVGMARTGSGKTAAFVIPMIEK 151

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   +++   R LI+ P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 152 LKSHSSKI-GSRALIMSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMAGN 210

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 211 PDIIIATPGRFLHLKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPQSRQTLL 270

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL--- 239
           FSAT+   L + +   LQ+P  + ++T S  +  +++ F  T     K+ ALL  L    
Sbjct: 271 FSATLPKSLVEFARAGLQDPTLVRLDTESKISPDLQNAFF-TVKSAEKEGALLHILHNVI 329

Query: 240 ------------------------------------QSQDTMKNGIIFCNQKKNVVNLCH 263
                                               Q   T  + I+F   K +V  +  
Sbjct: 330 KVPTGETEAGIRAKEQSSSGKHSKKRKRSEQNNPSPQESPTEHSTIVFVATKHHVDYIAS 389

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
            L + GF+V   +G++DQ +R   ++NF+ G   ++V +D+AARG+DIP + +V N+D P
Sbjct: 390 ILRESGFAVAYAYGSLDQTARKIQVNNFRAGISNILVVTDVAARGIDIPVLANVINYDFP 449

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++A+ ++HR+GRT RAGR G +++LV   D  ++
Sbjct: 450 SQAKIFVHRVGRTARAGRKGWSYSLVRDSDAPYL 483


>gi|316969700|gb|EFV53757.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
          Length = 693

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 140/370 (37%), Positives = 211/370 (57%), Gaps = 15/370 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F ++ LS  +  A+    YV PTPIQ   IP+ L   D+C  A TGTGKT ++++P+L
Sbjct: 152 LTFEEMNLSRSLNKAISSMNYVNPTPIQSACIPVALLGKDICACAATGTGKTCAYMIPIL 211

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L       R+ R L++ PTRELA QV +      K  ++++AL  GG+  ++Q   L 
Sbjct: 212 ERLLFKPVGRRITRVLVMVPTRELAMQVYETGTTLAKYTSISIALSTGGMDLKSQEAALR 271

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              DV+I TPGR++DH  N     +N +EILV+DEADRMLD  F   +  I  L   TRQ
Sbjct: 272 LNPDVVIATPGRLIDHLHNSPGFNLNGVEILVLDEADRMLDEHFEEQMLEIMRLCSPTRQ 331

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC---ALLQ 236
            +LFSATMTD+++ ++   L+ P ++ VN  +  A  +   FV    +  ++C   A L 
Sbjct: 332 AMLFSATMTDKVKDLASVSLKKPVKLFVNENTEMALNLRQQFVRIRKE--RECSREASLA 389

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCH----SLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL+   T K  ++F   K+    +CH     L   G  V  +HGN+ Q  R+  L  FK
Sbjct: 390 ALLKRSFTSK-VLLFAGTKE----VCHRLRLLLGLLGIRVAELHGNLSQAQRIDALEQFK 444

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +G + ++VA+D+AARG+D+  V  V N+ +P+  + Y+HR+GRT RAGR G A + V+++
Sbjct: 445 KGVVDVLVATDVAARGIDVQGVKTVINYQMPHVFKLYVHRVGRTARAGRSGCAVSFVSED 504

Query: 353 DIKHIDAIEK 362
           D K +  I K
Sbjct: 505 DRKLVKEIVK 514


>gi|194378748|dbj|BAG63539.1| unnamed protein product [Homo sapiens]
          Length = 657

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 139/393 (35%), Positives = 221/393 (56%), Gaps = 25/393 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D+ +   ++  +    Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+
Sbjct: 176 NFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILS 235

Query: 62  -------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 236 QIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 295

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 296 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 355

Query: 167 IQNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 356 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 415

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             + +   K + L  +L +  +    ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 416 --WVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 473

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 474 DREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNL 533

Query: 343 GKAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
           G A +   ++++    D ++ L+E K +   WL
Sbjct: 534 GLATSFFNEKNMNITKDLLDLLVEAKQEVPSWL 566


>gi|226480840|emb|CAX73517.1| ATP-dependent RNA helicase DDX3X [Schistosoma japonicum]
          Length = 637

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 141/380 (37%), Positives = 214/380 (56%), Gaps = 18/380 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +L L   V   V  A Y +PTP+Q   IP++    D+   AQTG+GKTA+F++P+L  
Sbjct: 175 FTELSLHKIVRDNVELANYERPTPVQKHAIPIIASGRDLMACAQTGSGKTAAFLIPILNN 234

Query: 62  ILEKGRA-----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           ++++G             R + P  LIL PTRELA+Q+ D+  K+    ++   +L GG 
Sbjct: 235 MIKQGPGDSICATIDSNRRKQFPVALILAPTRELASQIFDDARKFSYRSSIRPCVLYGGA 294

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q  +L +G +VL+ TPGR+ D   RG++ ++    LV+DEADRMLDMGF P I+ I
Sbjct: 295 DMRTQLMELSKGCNVLVATPGRLSDVLERGRVGLDYCRFLVLDEADRMLDMGFEPQIRRI 354

Query: 171 T---SLVPF-TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
               +L P   RQTL+FSAT   E+Q ++++FL +   + V    ST+E I    +  + 
Sbjct: 355 VEQDALPPSGERQTLMFSATFPHEIQILAKDFLSSYIFLTVGRVGSTSENITQTIL--WV 412

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           + + K   L  LL + +     ++F   K+    L + L  Q F V +IHG+  Q  R  
Sbjct: 413 EENAKRDALIDLLANSEAGTLTLVFVETKRGADALENYLYSQKFQVASIHGDRTQEDREL 472

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            LS F+ G   ++VA+ +AARGLDIP+V HV N+D+P+  E Y+HRIGRTGR G  G A 
Sbjct: 473 ALSCFRSGRTPVLVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRVGNLGLAT 532

Query: 347 TLVAKEDIKHIDAIEKLIEK 366
           +    ++      + +L+E+
Sbjct: 533 SFFNDKNRNLARGLVELLEE 552


>gi|237805399|ref|ZP_04592103.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331026506|gb|EGI06561.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 355

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 124/340 (36%), Positives = 198/340 (58%), Gaps = 7/340 (2%)

Query: 33  PLVLQRHDVCGIAQTGTGKTASFVLPMLT--ILEKGRARVRMPRTLILEPTRELAAQVAD 90
           P VL   D+   AQTGTGKTA F LP+L    +E  +      R L+L PTRELA QV +
Sbjct: 1   PPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNSIRALVLAPTRELADQVHE 60

Query: 91  NFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEIL 150
           +  +Y ++  L+     GG+    Q  KL +G DVL+ TPGR+LD   +  +  + ++ L
Sbjct: 61  SIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPGRLLDLHRQKAVKFSQLQTL 120

Query: 151 VIDEADRMLDMGFIPYIQNITSLVPF--TRQTLLFSATMTDELQKVSENFLQNPKRIEVN 208
           ++DEADRMLDMGFIP ++ I    P    RQTLLFSAT T+++  +++ +   P  +E+ 
Sbjct: 121 ILDEADRMLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTEDVMNLAKQWTTEPSIVEIE 180

Query: 209 TPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
           + +  ++ +E    A     + K  LL  L+ + +  +  ++F N+K  V  +   L + 
Sbjct: 181 SLNVASDNVEQHIYAVAG--ADKYKLLYNLV-TDNGWERVMVFANRKDEVRRIEERLVRD 237

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G +   + G++ Q  R+K L  F+EG I+++VA+D+A RG+ I  + HV NF +P   ++
Sbjct: 238 GVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPDD 297

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           Y+HRIGRTGRAG  G + +   ++D   + AIE+ + +K+
Sbjct: 298 YVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEEKLGRKI 337


>gi|66826815|ref|XP_646762.1| hypothetical protein DDB_G0270396 [Dictyostelium discoideum AX4]
 gi|74897375|sp|Q55BR9|DDX49_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx49; AltName:
           Full=DEAD box protein 49
 gi|60474611|gb|EAL72548.1| hypothetical protein DDB_G0270396 [Dictyostelium discoideum AX4]
          Length = 508

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 138/375 (36%), Positives = 214/375 (57%), Gaps = 9/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL+  +V      G+  P+ IQ  TIP +L+  D+   A+TG+GKTASF +P+L  
Sbjct: 6   FEELGLTTWLVANCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILNQ 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    V     +IL PTRELA Q+ + F   G   N+  +++IGGI    Q   L++ 
Sbjct: 66  LSEDPYGVF---AVILTPTRELAVQIGEQFNAIGAPMNVNCSVVIGGIDNVTQALILDKR 122

Query: 123 ADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTRQ 179
             +++ TPGR+  H N G K+ +   + LV+DEADR+L   F   I +I   +P    RQ
Sbjct: 123 PHIIVATPGRLASHLNNGLKIALKFCKFLVLDEADRLLGEDFELEIASILEHLPPPEKRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATMT  L K+    L  P   E N+   T +T++  ++   A  +K C L+  L 
Sbjct: 183 TLLFSATMTKNLTKLDSIALNKPFIFEDNSKYDTVDTLKQEYIYMPAP-TKDCYLVYILK 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + + +  + I+F N    V  +   L K      ++H  +DQ+SR+  L  FK G ++++
Sbjct: 242 KHEGS--SAIVFVNNCYAVEAVKGMLNKLDIPSVSLHSFLDQKSRLAALKTFKSGKVKVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDIPDV  V N+ + N +++YIHR+GRT R GR G+A + +   D+  I  
Sbjct: 300 VATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFGRSGRAISFITPHDVSLIKG 359

Query: 360 IEKLIEKKVDWLNGD 374
           IE++I+K+++    D
Sbjct: 360 IEEIIKKQLELYKTD 374


>gi|224121758|ref|XP_002318665.1| predicted protein [Populus trichocarpa]
 gi|222859338|gb|EEE96885.1| predicted protein [Populus trichocarpa]
          Length = 541

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 130/367 (35%), Positives = 207/367 (56%), Gaps = 15/367 (4%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-----PR 74
           G+V+PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP    +    A+ R+     P 
Sbjct: 139 GFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYMLPAFVHVA---AQPRLVQGDGPI 195

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTRELA Q+ +   K+G   N+    + GG P   Q + L+RG +++I TPGR++
Sbjct: 196 VLVLAPTRELAVQIQEEGLKFGSPANIRSTCIYGGAPKGPQIRDLQRGVEIVIATPGRLI 255

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D        +  +  LV+DEADRMLDMGF P I+ I S +   RQTL +SAT   E++ +
Sbjct: 256 DMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLYWSATWPREVEIL 315

Query: 195 SENFLQNPKRIEVNTPSSTA-ETIEHC--FVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
           +  FL N  ++ + +    A ++I      +    +Y++   LL++++     +    IF
Sbjct: 316 ARQFLHNAYKVIIGSADLKANQSINQVVEVIMDMEKYNRLIKLLKEVMDGSRIL----IF 371

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
              KK    +   L   G+   +IHG+ +Q  R  +L+ FK G   +M A+D+AARGLD+
Sbjct: 372 METKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSAIMTATDVAARGLDV 431

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
            D+  V N+D P+  E+Y+HRIGRTGRAG  G AFT     + K    + +++++    +
Sbjct: 432 KDIKCVINYDFPSSLEDYVHRIGRTGRAGARGTAFTFFTDSNAKFARGLIRILQESGQIV 491

Query: 372 NGDLSSL 378
              LS+L
Sbjct: 492 PPALSAL 498


>gi|237681149|ref|NP_001153721.1| ATP-dependent RNA helicase belle [Tribolium castaneum]
 gi|270008148|gb|EFA04596.1| belle [Tribolium castaneum]
          Length = 699

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 144/375 (38%), Positives = 211/375 (56%), Gaps = 20/375 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK--------GRARV 70
           A Y  PTP+Q   IP+++ + DV   AQTG+GKTA+F++P+L  + +        GR+R 
Sbjct: 233 ARYDTPTPVQKYAIPIIVGKRDVMACAQTGSGKTAAFLVPILNQMYEHGPPNITHGRSRR 292

Query: 71  R-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           +  P  L+L PTRELA Q+ D  +K+     +   ++ GG     Q + L+RG  +L+ T
Sbjct: 293 KQYPLGLVLAPTRELATQIYDESKKFAYRSRVRPCVVYGGAHIGDQMRDLDRGCHLLVAT 352

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS--LVPFT--RQTLLFSA 185
           PGR+LD  +RG++ ++    LV+DEADRMLDMGF   I+ I     +P T  RQTL+FSA
Sbjct: 353 PGRLLDMIDRGRIGLDYCRYLVLDEADRMLDMGFELQIRRIVEKETMPKTGERQTLMFSA 412

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQLLQSQD 243
           T    +Q ++ +FL N   + V    ST+E I     +V  + + S    LL     SQ 
Sbjct: 413 TFPSPIQMLARDFLDNYIFLAVGRVGSTSENITQKVVWVEEHDKRSFLLDLLNAAEMSQP 472

Query: 244 TMKN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           + ++  ++F   KK   +L   L  +G+ V +IHG+  QR R   L  F+ G   ++VA+
Sbjct: 473 SAESLTLVFVETKKGADSLEEFLHFEGYPVTSIHGDRSQREREDALRQFRSGNTPILVAT 532

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA-IE 361
            +AARGLDIP V HV NFD+P+  E Y+HRIGRTGR G  G A +     +       ++
Sbjct: 533 AVAARGLDIPHVKHVINFDLPSDIEEYVHRIGRTGRMGNLGLATSFFNDRNRNLASGLLD 592

Query: 362 KLIEKKVD---WLNG 373
            LIE K +   WL G
Sbjct: 593 LLIEAKQEYPSWLEG 607


>gi|154316321|ref|XP_001557482.1| hypothetical protein BC1G_03746 [Botryotinia fuckeliana B05.10]
 gi|160380649|sp|A6RUH2|DRS1_BOTFB RecName: Full=ATP-dependent RNA helicase drs1
 gi|150846532|gb|EDN21725.1| hypothetical protein BC1G_03746 [Botryotinia fuckeliana B05.10]
          Length = 801

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 137/362 (37%), Positives = 201/362 (55%), Gaps = 3/362 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  ++  +   G+ +PTPIQ KTIP+ L   DV G A TG+GKTA+FV+P+L  
Sbjct: 270 FQSMSLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFVVPVLER 329

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q      K   + ++   L +GG+  + Q  +L   
Sbjct: 330 LLYRPKKVPTSRVAILMPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQEAELRLR 389

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 390 PDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEAGFADELNEILTTIPKSRQTM 449

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATM+  +  +    L  P R+ V++  STA T+   F+     +  K+   L  L  
Sbjct: 450 LFSATMSSSVDNLIRVGLNRPVRLLVDSQKSTAGTLVQEFIRLRPGREGKRMGYLLYLCA 509

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  T +  I+F  QKK            G     +HG++ Q  R+K +  F++G    ++
Sbjct: 510 NVYTDRV-IVFFRQKKEAHRARIIFGLSGLKATELHGSMSQEQRIKSVEAFRDGKASFLL 568

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLDI  V  V N++ P   + Y+HR+GRT RAGR G+A T+ A+ D K + A 
Sbjct: 569 ATDLASRGLDIKGVDTVINYEAPQSHDIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAA 628

Query: 361 EK 362
            K
Sbjct: 629 VK 630


>gi|332796635|ref|YP_004458135.1| DEAD/DEAH box helicase domain-containing protein [Acidianus
           hospitalis W1]
 gi|332694370|gb|AEE93837.1| DEAD/DEAH box helicase domain protein [Acidianus hospitalis W1]
          Length = 370

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 136/365 (37%), Positives = 212/365 (58%), Gaps = 29/365 (7%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           LS ++  A+ +A YV PT +Q   IP +LQ   V   A+TG+GKTA++++P   I+EK  
Sbjct: 25  LSEELTKALQEANYVNPTKVQELAIPQMLQGKSVLAQAKTGSGKTAAYLIP---IIEKEE 81

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
                 + L+L PTRELA QVA+   K GK   +++ ++IGG+P+  Q+K+ ++  D++I
Sbjct: 82  ------QALVLTPTRELAEQVANEARKLGKYKKMSIGVIIGGVPYSGQDKEAKK--DIVI 133

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT-----SLVPFTRQTLL 182
            TPGRILD + +G L ++   + ++DE DRM DMGFI  ++ I       +  F      
Sbjct: 134 GTPGRILDLWGKGYLDLSRFSVAIVDEVDRMFDMGFIDDVRMILKNANPDMYGF------ 187

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ +E++ +++ F  N + ++V+        IEH F        K   L  +L  ++
Sbjct: 188 FSATVPEEVESLAKEFSPNIEFLKVDDIKPVE--IEHLFYEVKGWRDKISKLKDELDDNE 245

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T    I+F N KK V  L   L +  F +  +HG++ QR R++ LS+F+ G   +++++
Sbjct: 246 KT----IVFVNTKKKVEELYEEL-RDDFEISLLHGDLPQRVRLRNLSSFRRGKTNVLLST 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLA+RG+D+ DV  V NFD P   E YIHR+GRTGR GR G A T   + D + I  I+ 
Sbjct: 301 DLASRGIDVIDVTKVINFDTPRDVETYIHRVGRTGRMGRKGIAITFYTRRDAQLILKIKD 360

Query: 363 LIEKK 367
           LI+ K
Sbjct: 361 LIKGK 365


>gi|159489124|ref|XP_001702547.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280569|gb|EDP06326.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 600

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 140/366 (38%), Positives = 204/366 (55%), Gaps = 17/366 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DL L   ++  +    + KPTP+Q  +I + L   D+   AQTG+GKTA+F  P++ +
Sbjct: 146 FEDLQLPACMMENIKRCKFTKPTPVQKHSITIGLAGRDLMACAQTGSGKTAAFCFPIIAS 205

Query: 62  ILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           +L KG        +R  +P  L+L PTREL +Q+ D   K+     L   ++ GG P   
Sbjct: 206 MLMKGYQPAAGRNSRKALPGALVLAPTRELTSQIYDEARKFTYMTGLRPVVIYGGAPAPN 265

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS-- 172
           Q + LERG D+L+ TPGR+ D   RG++ +++I  L +DEADRMLDMGF P I+ I    
Sbjct: 266 QLRDLERGCDILVATPGRLSDFIERGRVGLSSIVFLCLDEADRMLDMGFEPQIRRIVEQE 325

Query: 173 -LVPFT-RQTLLFSATMTDELQKVSENFLQNPKRIEVN-TPSSTAETIEHCFVATYAQYS 229
            + P   RQTL+FSAT   E+Q+++ +FL N   + V    SST   ++H    T  +  
Sbjct: 326 DMPPVGHRQTLMFSATFPKEIQRLASDFLANYVFLTVGRVGSSTDLIVQHIEYVTPEE-- 383

Query: 230 KKCALLQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
           K+  LL  +   + + + G  ++F   K+    L   L +      +IHG+  Q  R   
Sbjct: 384 KQNTLLDLISTVEVSRRQGLTLVFVETKRGADELERILTRNQLPATSIHGDRSQEQREMA 443

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L +FK G   +MVA+D+AARGLDIP V HV N+D+P   ++Y+HRIGRTGRAG  G A  
Sbjct: 444 LRSFKSGKTPVMVATDVAARGLDIPHVTHVINYDLPKDIDDYVHRIGRTGRAGHKGLATA 503

Query: 348 LVAKED 353
                D
Sbjct: 504 FFTDSD 509


>gi|302660003|ref|XP_003021686.1| hypothetical protein TRV_04197 [Trichophyton verrucosum HKI 0517]
 gi|291185595|gb|EFE41068.1| hypothetical protein TRV_04197 [Trichophyton verrucosum HKI 0517]
          Length = 813

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 131/386 (33%), Positives = 211/386 (54%), Gaps = 39/386 (10%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +++ GL PK +  ++D+ GY  P+PIQ  +IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 372 WSESGL-PKRLLEIIDSVGYKDPSPIQRVSIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 430

Query: 62  IL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +       E    R   P  +IL PTRELA Q+     K+    N  V  ++GG   E 
Sbjct: 431 YISSLPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEE 490

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 491 QAYNLRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 550

Query: 175 PFT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNT 209
           P +                         RQT++++ATM   +++++  +L+ P  + +  
Sbjct: 551 PVSNEKPDTEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 610

Query: 210 PSSTAETIEHC--FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
                +T+E    FVA   +  K+ A   ++L S++     I+F N K+N   +   ++ 
Sbjct: 611 IGEAVDTVEQRVEFVAGEDKRKKRLA---EILTSREYRPPIIVFVNIKRNCDAVARDIKH 667

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            GFS   +HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++    E
Sbjct: 668 MGFSAVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIE 727

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKED 353
           +Y HRIGRTGRAG+ G A T +  ED
Sbjct: 728 SYTHRIGRTGRAGKSGVAITFLGSED 753


>gi|302503157|ref|XP_003013539.1| hypothetical protein ARB_00357 [Arthroderma benhamiae CBS 112371]
 gi|291177103|gb|EFE32899.1| hypothetical protein ARB_00357 [Arthroderma benhamiae CBS 112371]
          Length = 812

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 131/386 (33%), Positives = 211/386 (54%), Gaps = 39/386 (10%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +++ GL PK +  ++D+ GY  P+PIQ  +IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 371 WSESGL-PKRLLEIIDSVGYKDPSPIQRVSIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 429

Query: 62  IL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +       E    R   P  +IL PTRELA Q+     K+    N  V  ++GG   E 
Sbjct: 430 YISSLPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEE 489

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 490 QAYNLRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 549

Query: 175 PFT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNT 209
           P +                         RQT++++ATM   +++++  +L+ P  + +  
Sbjct: 550 PVSNEKPDTEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 609

Query: 210 PSSTAETIEHC--FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
                +T+E    FVA   +  K+ A   ++L S++     I+F N K+N   +   ++ 
Sbjct: 610 IGEAVDTVEQRVEFVAGEDKRKKRLA---EILTSREYRPPIIVFVNIKRNCDAVARDIKH 666

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            GFS   +HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++    E
Sbjct: 667 MGFSAVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIE 726

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKED 353
           +Y HRIGRTGRAG+ G A T +  ED
Sbjct: 727 SYTHRIGRTGRAGKSGVAITFLGSED 752


>gi|217964610|ref|YP_002350288.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HCC23]
 gi|217333880|gb|ACK39674.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HCC23]
 gi|307570824|emb|CAR84003.1| ATP-dependent RNA helicase [Listeria monocytogenes L99]
          Length = 470

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 132/361 (36%), Positives = 204/361 (56%), Gaps = 13/361 (3%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +L LS ++  A+ + GY + TP+Q   IP+ L   D+   +QTG+GKTA+F +P   I E
Sbjct: 3   NLKLSEEIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIP---IAE 59

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           +       P+ LI+ PTRELA QV       G+   +  A + G  PF  Q  +L +   
Sbjct: 60  QVEWEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNH 119

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGR+LDH  +G L ++ +  LV+DE D ML MGFI  +++I S +P  RQ L FS
Sbjct: 120 IVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFS 179

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           ATM +E+Q + + +  +P  IE+   S     I H  +    Q   K   L+ +L +++ 
Sbjct: 180 ATMPEEMQDLIKRYQDDPMVIEM--ASEKTNPIFHVEM----QTDNKEKTLKDVLITENP 233

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             + IIFCN K  V  L   L+        IHG + Q  R + + +FK G  + ++A+D+
Sbjct: 234 -DSAIIFCNTKNQVDELTDLLD---VKASKIHGGLRQEDRFRAMDDFKSGKSRFLIATDV 289

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           A RG+D+ +V  V N+D+P   ENY+HRIGRTGRAG+ GKA + V   +   +  IE+++
Sbjct: 290 AGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEML 349

Query: 365 E 365
           +
Sbjct: 350 D 350


>gi|187477179|ref|YP_785203.1| ATP-dependent RNA helicase DbpA [Bordetella avium 197N]
 gi|115421765|emb|CAJ48276.1| ATP-independent RNA helicase [Bordetella avium 197N]
          Length = 462

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 142/367 (38%), Positives = 206/367 (56%), Gaps = 12/367 (3%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ + TPIQ +++PL+L   D+   A+TG+GKTA+F L +L  L+  R     P+ L+L 
Sbjct: 23  GFEQMTPIQEQSLPLILDGRDLIAQAKTGSGKTAAFGLGLLQSLDLTRL---APQALVLC 79

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N+ V  L GG     Q + L RGA +++ TPGR+ DH  
Sbjct: 80  PTRELADQVAQELRRLARLIPNVKVLTLCGGAAGRPQAESLARGAHLVVGTPGRVQDHLA 139

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           RG L +  ++ LV+DEADRM+DMGF   I  I S  P  RQTLLFSAT  D ++K+S  F
Sbjct: 140 RGNLDLAALKTLVLDEADRMVDMGFYDDIVAIASHCPVKRQTLLFSATYPDNIRKLSARF 199

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVAT-YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
           L+NP  ++V T    A  IE  F     A      A L    +   T+    +FCN K  
Sbjct: 200 LRNPAEVKVQT-QHDASRIEQIFYEIDEADRLDAVATLLAHYRPASTL----VFCNTKIR 254

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
              L   L   G S  A++G+++QR R +IL  F   +  ++VA+D+AARGLDI ++  V
Sbjct: 255 SHELIERLRADGISAQALNGDLEQRDRDEILIQFANQSCAVLVATDVAARGLDIQNLSAV 314

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
            N DV    E ++HRIGR+GR  + G A +L + E+++  + IE+     + W   D+ S
Sbjct: 315 INVDVSKDTEVHVHRIGRSGRGEQKGLALSLCSPEEMRWANLIEQYQGAPLKW--ADIKS 372

Query: 378 LNPPLEK 384
           L    ++
Sbjct: 373 LRSKADR 379


>gi|270004664|gb|EFA01112.1| hypothetical protein TcasGA2_TC010324 [Tribolium castaneum]
          Length = 574

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + G    V+  +   G+  PTPIQ +  P+ L   D+ GIA TG+GKT S++LP +  
Sbjct: 133 FEEAGFPDYVMSEIRKMGFKHPTPIQSQGWPIALSGRDMVGIASTGSGKTLSYILPAIVH 192

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +      +R   P  L+L PTRELA Q+      +G++  +    + GG P   Q   L 
Sbjct: 193 INHQPRLLRGDGPIALVLAPTRELAQQIQQVATDFGRSSKIRNTCVFGGAPKGPQANDLM 252

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G +++I TPGR++D     +  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 253 DGVEIVIATPGRLIDFLESNRTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT 312

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALL 235
           L++SAT   E+Q ++  FL++  +I V +   +A     + I+ C    Y + +K   LL
Sbjct: 313 LMWSATWPKEVQALAAEFLKDYIQINVGSLQLSANHNILQIIDVC--QEYEKETKLSTLL 370

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++++  ++     IIF   KK V  +   +++ G+    IHG+  Q+ R  +L +F+ G 
Sbjct: 371 KEIMAEKEN--KTIIFIETKKRVDEITRKMKRDGWPAVCIHGDKSQQERDWVLQDFRTGK 428

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI- 354
             ++VA+D+AARGLD+ DV  V NFD P+ +E+Y+HRIGRTGR+ R G A+T     +  
Sbjct: 429 APILVATDVAARGLDVEDVKFVINFDYPSNSEDYVHRIGRTGRSQRTGTAYTFFTPANAN 488

Query: 355 KHIDAIEKLIEKK 367
           K  D +  L E K
Sbjct: 489 KAADLVSVLKEAK 501


>gi|86570094|ref|NP_001033411.1| hypothetical protein F53H1.1 [Caenorhabditis elegans]
 gi|14574201|gb|AAK68386.1|AF045641_1 Hypothetical protein F53H1.1 [Caenorhabditis elegans]
          Length = 970

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 138/360 (38%), Positives = 205/360 (56%), Gaps = 16/360 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G++ K++  +    Y KPT IQ + IP ++   DV GIA+TG+GKT +F+LPM   
Sbjct: 306 WAQCGVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRH 365

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +IL PTRELA Q      K+ K   L VA   GG+    Q 
Sbjct: 366 ILDQPELEEGDG----PIAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQI 421

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
             L+RGA++++CTPGR++D    N GK+  +  +  LV+DEADRM D GF P I  + + 
Sbjct: 422 ADLKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNN 481

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +   +QT+LFSAT    ++ ++   L  P  I V   S     I    V   A++ K   
Sbjct: 482 IRPDKQTVLFSATFPRHMEALARKVLDKPVEILVGGKSVVCSDITQNAVIC-AEHQKFLK 540

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF-SVCAIHGNIDQRSRMKILSNFK 292
           LL+ LL       + I+F ++++   ++   L + G+ SV  +HG IDQ  R   +++FK
Sbjct: 541 LLE-LLGMYYEEGSSIVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFK 599

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G I+++VA+ +AARGLD+ ++  V N+D PN  E+Y+HR+GRTGRAGR G A+T V  E
Sbjct: 600 TGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPE 659


>gi|27367453|ref|NP_762980.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|27359022|gb|AAO07970.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
          Length = 412

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 137/368 (37%), Positives = 208/368 (56%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS +++ A L   + KPT IQ   IP +L   D+  +A TG+GKT ++ LP+L
Sbjct: 1   MPFSTLSLSSELIHA-LPKDFKKPTDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +    + LIL P RELA QV++   + G+   L    L GG+  E Q + L 
Sbjct: 60  EKLGVNPEQ----KALILVPIRELATQVSEAINQVGQALGLNAVCLCGGVDKEQQLQALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ T GR++D  N G L ++NI  LV+DEADR+L+MGF P +QNI   +   RQT
Sbjct: 116 TNPHILVATTGRLVDLANNG-LDLSNIHYLVLDEADRLLNMGFWPDVQNIAGQISNQRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT +DEL+  ++  +Q PK++  +  +ST + I         + SK  AL++  L 
Sbjct: 175 AMFSATFSDELKGKAKLLMQAPKQVAAHQENSTNQDIAETLYLVN-KGSKTKALIE--LI 231

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     ++F   K+N   L   L K G S  A+HG+  Q  R   L+ FK G  Q+++
Sbjct: 232 QKNAWTQALVFIGAKENADGLAKKLNKAGISTNALHGDKSQAEREAALAQFKSGQTQVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG  G A +LV   ++  + AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVALSLVCHGEMDALSAI 351

Query: 361 EKLIEKKV 368
             L ++++
Sbjct: 352 RHLTQREL 359


>gi|325091017|gb|EGC44327.1| ATP-dependent RNA helicase drs1 [Ajellomyces capsulatus H88]
          Length = 828

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 138/364 (37%), Positives = 203/364 (55%), Gaps = 7/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L  
Sbjct: 306 FQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILER 365

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R +IL PTRELA Q  +   K     ++T   L+GG     Q   L++ 
Sbjct: 366 LLYRPRKVPTSRVVILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKR 425

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 426 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTM 485

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMT+ + K+    L  P R+ V+    T  T+   FV     +  K+   L  L +
Sbjct: 486 LFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLIQEFVRLRPGREEKRLGYLIVLCK 545

Query: 241 S--QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +D +   I+F   KK    +       G  V  +HG++ Q  R+K + +F++G +  
Sbjct: 546 NIYKDRV---IVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRIKSVESFRDGKVSF 602

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A TL A+ D K + 
Sbjct: 603 LLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVK 662

Query: 359 AIEK 362
           A  K
Sbjct: 663 AAVK 666


>gi|293395719|ref|ZP_06640001.1| ATP-independent RNA helicase DbpA [Serratia odorifera DSM 4582]
 gi|291421656|gb|EFE94903.1| ATP-independent RNA helicase DbpA [Serratia odorifera DSM 4582]
          Length = 445

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 215/367 (58%), Gaps = 10/367 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY + TP+Q   +P +L   DV   A+TG+GKTA+F    + +L+K        + LIL 
Sbjct: 8   GYAEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAF---GIGLLDKINVSQVATQALILC 64

Query: 80  PTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QV+    +  +   N+ +  L GG P  AQ   L     +++ TPGRI +H  
Sbjct: 65  PTRELADQVSKELRRLARFTQNIKILTLCGGQPMGAQLDSLVHAPHIVVGTPGRIQEHLR 124

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +  L+++ +++LV+DEADRMLDMGF   I  + S  P  RQTLLFSAT    ++++S+  
Sbjct: 125 KKTLVLDEVKVLVLDEADRMLDMGFADDIDQVISYTPPQRQTLLFSATYPAGIERISDRV 184

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            + P  +EV+   +     +  +  T  Q  +   L+  +   Q T  + ++FCN K++ 
Sbjct: 185 QRAPLSVEVDDGDAPTTIAQRFYETTRDQ--RPALLVAAIRHFQPT--SCVVFCNTKRDC 240

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            ++  +LE +G SV A+HG+++QR R ++L  F   + +++VA+D+AARGLDI D+  V 
Sbjct: 241 QSVFEALEARGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKDLELVV 300

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN-GDLSS 377
           N+++    E ++HRIGRTGRAG  G A +L A +++    A+E+ ++ K+ W +  +LS 
Sbjct: 301 NYELSFDPEVHVHRIGRTGRAGMSGLAISLCAPQEMTRAHALEEYLDCKLQWASVSELSG 360

Query: 378 LN-PPLE 383
            +  PLE
Sbjct: 361 ASTAPLE 367


>gi|72074252|ref|XP_780035.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68 isoform 1
           [Strongylocentrotus purpuratus]
 gi|115968722|ref|XP_001179006.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68 isoform 2
           [Strongylocentrotus purpuratus]
          Length = 883

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 132/389 (33%), Positives = 217/389 (55%), Gaps = 18/389 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            +F +      V+  +  +G+  PTPIQ +  P+ L   D+ GIA TG+GKT S++LP +
Sbjct: 109 FEFHEASFPDYVMGELSKSGFSHPTPIQAQGWPVALSGRDLVGIAATGSGKTLSYLLPSI 168

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G   V  P  L+L PTRELA QV      +G++  +    + GG P   
Sbjct: 169 VHINHQPFLERG---VDGPIALVLAPTRELAQQVQQVAFAFGRSSKIKSTCVYGGAPKGQ 225

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D     K  +     +V+DEADRMLDMGF P I+ I   +
Sbjct: 226 QIRDLERGVEICIATPGRLIDFLENNKTNLRRCTYVVLDEADRMLDMGFEPQIRKIMEQI 285

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTAETIEHCFVATYAQYSK 230
              RQ  ++SAT   +++ ++E+F+++   I VN    T S+    ++   V   ++  K
Sbjct: 286 RPDRQVQMWSATWPKDVRNLAEDFIRD--YIMVNIGSLTLSANHNILQIIDVCEDSEKDK 343

Query: 231 K-CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K   LL++++Q +D     ++FC  K+   +L   + + G+    +HG+  Q  R  +LS
Sbjct: 344 KLIQLLEEIMQEKDNKT--LVFCETKRRTDDLVRRMRRDGWPAMCLHGDKSQPERDWVLS 401

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F++G   ++VA+D+A+RGLD+ D+  V N+D PN +E+Y+HRIGRT R+ R G A+T  
Sbjct: 402 EFRDGRAPILVATDVASRGLDVTDIKFVINYDYPNSSEDYVHRIGRTARSTRTGTAYTFF 461

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            + ++K    +  ++++    +N  L SL
Sbjct: 462 TRNNMKQAADLINVLQEAKQVINPKLISL 490


>gi|290987818|ref|XP_002676619.1| predicted protein [Naegleria gruberi]
 gi|284090222|gb|EFC43875.1| predicted protein [Naegleria gruberi]
          Length = 493

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 127/365 (34%), Positives = 205/365 (56%), Gaps = 16/365 (4%)

Query: 11  KVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV 70
           +++ A+ D  + +PT +Q + IP+ +   D+ G+A+TG+GKTAS+++PM   + K     
Sbjct: 98  EIINAITDLKFKEPTAVQKQCIPIAMNGIDLVGLAETGSGKTASYIIPMCCQIAK---LP 154

Query: 71  RM--------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           RM        P  LIL PTRELA Q+     KY + +   V  +IGG+  E Q++ +  G
Sbjct: 155 RMNDEIAKDGPYGLILVPTRELAEQIEREATKYARQFEFRVQAIIGGVSIEKQSRLIRGG 214

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTRQT 180
            ++L+ TPGR++D  N   +++N    +V+DEAD+M++M F   +  I   +P    RQT
Sbjct: 215 CEILVATPGRLIDCLNNSIVVLNQCHFIVLDEADKMIEMNFEKDVNTILENMPTHIQRQT 274

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  E++ ++  +L+    + V       E IE   +    + +K+  LL+ L  
Sbjct: 275 MLFSATMPPEVENIAMKYLKKRVTVAVGEVGRAVERIEQEVMWIKHENAKRDKLLELLYD 334

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   +   I+FCN KK V  +   +   GF   +IHGN  Q +R   L  FK G   ++V
Sbjct: 335 ADPPV---IVFCNLKKEVDAIAKFVSNAGFRSTSIHGNKSQEARNSALEAFKSGKFDVIV 391

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+  RG+DI  V  V N+ +P     Y HRIGRTGRAGR G+A + + K+D + +  +
Sbjct: 392 ATDVLGRGIDISGVTLVVNYSLPKTISAYTHRIGRTGRAGRTGRAVSFLTKDDTEIMYDL 451

Query: 361 EKLIE 365
           +K++E
Sbjct: 452 KKMLE 456


>gi|308502287|ref|XP_003113328.1| hypothetical protein CRE_25199 [Caenorhabditis remanei]
 gi|308265629|gb|EFP09582.1| hypothetical protein CRE_25199 [Caenorhabditis remanei]
          Length = 698

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 144/400 (36%), Positives = 220/400 (55%), Gaps = 37/400 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F+DL L   +   +  AGY +PTP+Q  +IP +    D+   AQTG+GKTA+F++P++  
Sbjct: 229 FSDLSLHEWIEDNIKTAGYDRPTPVQKYSIPALQSGRDLMSCAQTGSGKTAAFLVPLVNS 288

Query: 61  -----------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                      ++   G  + + P  L+L PTREL+ Q+ +   K+     +T ALL GG
Sbjct: 289 ILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIYNESRKFAYRTPITSALLYGG 348

Query: 110 IP-FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
              ++ Q  KL  G  +LI TPGR++D  ++G + +     LV+DEADRMLDMGF P I+
Sbjct: 349 RENYKDQIHKLRLGCHILIATPGRLIDVMDQGLIGLEGCRYLVLDEADRMLDMGFEPQIR 408

Query: 169 NITSLVPFTRQ-------TLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHC 220
            I   V F R        T +FSAT   E+Q ++++FL+ N   + V    ST+E I   
Sbjct: 409 QI---VEFNRMPPKEERVTAMFSATFPKEIQLLAQDFLKPNYVFLAVGRVGSTSENIMQK 465

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
            V  + +  +K + L  LL +       ++F   K+   +L + L +Q + V  IHG++ 
Sbjct: 466 IV--WVEEDEKRSYLMDLLDATGDSSLTLVFVETKRGASDLAYYLSRQNYQVVTIHGDLK 523

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q  R K L  F+ GT  ++VA+ +AARGLDIP+V HV N+D+P+  + Y+HRIGRTGR G
Sbjct: 524 QFEREKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVG 583

Query: 341 RHGKAFTL-------VAKEDIKHIDAIEKLIEKKVDWLNG 373
             G A +        +A+E    +D I +  ++  DWL G
Sbjct: 584 NVGLATSFFNDKNRNIARE---LMDLIVEANQELPDWLEG 620


>gi|324510721|gb|ADY44481.1| ATP-dependent RNA helicase abstrakt [Ascaris suum]
          Length = 462

 Score =  236 bits (602), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 138/353 (39%), Positives = 199/353 (56%), Gaps = 7/353 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            +F + G  P+V+  +L + + +PT IQ  + P+     D+  IA+TG+GKT +F+LP +
Sbjct: 59  FEFNESGF-PEVLVNMLYSSFERPTIIQSISWPIASSGRDIVSIAKTGSGKTLAFILPGI 117

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             T  +  R R   P  L+L PTRELA QV +   +Y K   L+V  L GG    +Q + 
Sbjct: 118 IHTTKQPPRGRGEGPSVLVLLPTRELAQQVQEVSREYCKAMGLSVTCLFGGAARGSQARD 177

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG DV I TPGR+LD    G   +     LV+DEADRMLDMGF   I+ I S     R
Sbjct: 178 LERGVDVAIATPGRLLDFLESGTTNLRRCSYLVLDEADRMLDMGFEEEIRTIFSFFKGQR 237

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM  ++Q  + + L   + I VN   + A ++       Y +  +K   +   
Sbjct: 238 QTLLFSATMPRKIQNFARSAL--VRAIIVNVGRAGAASLNVLQEIEYVRADEKLTRILDC 295

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ   T    +IF  +K +V N+   L  +G  V ++HG  DQ+ R   +  F+ G   +
Sbjct: 296 LQK--TPPRVLIFAEKKSDVDNIYEYLLVKGVDVASLHGGKDQKDRHTGVDAFRRGEKDV 353

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +VA+D+A++GLD  ++ HV NFD+P   ENY+HRIGRTGR+G+ G A T V +
Sbjct: 354 LVATDVASKGLDFENIQHVINFDMPEDIENYVHRIGRTGRSGKKGMATTFVNR 406


>gi|195021550|ref|XP_001985416.1| GH17046 [Drosophila grimshawi]
 gi|193898898|gb|EDV97764.1| GH17046 [Drosophila grimshawi]
          Length = 811

 Score =  236 bits (602), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 130/355 (36%), Positives = 207/355 (58%), Gaps = 7/355 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G   +++ +V  A Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ P+LT 
Sbjct: 294 FGHFGFDDQLLKSVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPLLTH 353

Query: 63  LEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   R  +R    P  LIL PTREL+ Q+ +  +K+GK YN+ V    GG     Q+K L
Sbjct: 354 LMDQR-ELRPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSKAL 412

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G ++++ TPGR++D        +  +  LV+DEADRM  MGF P +++I + V   RQ
Sbjct: 413 EQGCEIVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQ 472

Query: 180 TLLFSATMTDELQKVSENFLQNPKRI-EVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           TLLFSAT    +++++ + L +P RI + +   +  +  +H +V  +    +K   L   
Sbjct: 473 TLLFSATFKKRIERLARDILTDPVRIVQGDLNEANQDITQHVYV--FPNPLQKWNWLLCH 530

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L    +    ++F  +K +   + ++L  +  +   +HG++DQ  R K++  FK     +
Sbjct: 531 LVKFLSEGGVLVFVTKKADAETVSNNLLLKEHNCLLLHGDMDQADRNKVIMQFKRKECDI 590

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +VA+D+AARGLDIP + +V N+D+    + + HRIGRTGRAG  G A+TLV  +D
Sbjct: 591 LVATDVAARGLDIPHIRNVINYDIARDIDTHTHRIGRTGRAGEKGNAYTLVTDKD 645


>gi|15894071|ref|NP_347420.1| ATP-dependent RNA helicase [Clostridium acetobutylicum ATCC 824]
 gi|15023670|gb|AAK78760.1|AE007593_8 ATP-dependent RNA helicase, superfamily II [Clostridium
           acetobutylicum ATCC 824]
 gi|325508198|gb|ADZ19834.1| ATP-dependent RNA helicase, superfamily II [Clostridium
           acetobutylicum EA 2018]
          Length = 374

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 137/368 (37%), Positives = 206/368 (55%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LG+S  +V  +  +G  +PTP+Q ++I  +    DV G AQTGTGKT +F+LP  
Sbjct: 1   MNFKKLGISEALVEVLKKSGITEPTPVQAESISHIKGGRDVIGEAQTGTGKTLAFLLP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I E     +   + LI+ PTRELA Q+ +   K  +  ++ +    GG    +Q KKL 
Sbjct: 59  -IFENISPTLSAVQALIVTPTRELALQITEQALKLKEAKDINILAAYGGKDIASQQKKLR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LD   R  + +  ++  V+DEAD+ML MGF   ++ I    P  RQ 
Sbjct: 118 GSTHLIIATPGRLLDLIQRKTVDLRKLKSFVLDEADQMLLMGFKNDVEEILKNAPKKRQM 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT++  ++K++  ++ NP  I       T E IE   V T  +  KK   L   L+
Sbjct: 178 LCFSATISPAVKKLAYRYMTNPLTISTKKKEVTLENIEQFVVETTDR--KKLEDLCTALK 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     IIF   K+ V  L   L ++GF    +H ++ Q  R +I+ +F+ G  Q ++
Sbjct: 236 -QDNPFMAIIFGRTKRRVDELEVELYRRGFDCQKLHSDLTQTKRERIMKSFRNGDFQYLL 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI  V H++N+DVP+  E+YIHRIGRTGRAG  G      A+ D + ++ I
Sbjct: 295 ATDVASRGLDISGVSHIYNYDVPDNPESYIHRIGRTGRAGEEGYTCLFAAERDKRKLEDI 354

Query: 361 EKLIEKKV 368
           E  I+ K+
Sbjct: 355 EAAIKFKI 362


>gi|47209111|emb|CAF90069.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 415

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 132/384 (34%), Positives = 209/384 (54%), Gaps = 13/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 36  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQC 95

Query: 63  LE-----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L+         +VR  + LIL PTRELA Q+       G   N+     IGG       +
Sbjct: 96  LDIQVSGSTLVQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIR 155

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P  
Sbjct: 156 KLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 215

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCAL 234
            Q +L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L
Sbjct: 216 TQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 275

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
              L     T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G
Sbjct: 276 YDTL-----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG 330

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             ++++++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI
Sbjct: 331 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 390

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL 378
           + +  IE+    ++D +  +++ L
Sbjct: 391 RILRDIEQYYSTQIDEMPMNVADL 414


>gi|326474132|gb|EGD98141.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Trichophyton
           tonsurans CBS 112818]
          Length = 809

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 137/427 (32%), Positives = 226/427 (52%), Gaps = 41/427 (9%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +++ GL PK +  ++D+ GY  P+PIQ  +IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 371 WSESGL-PKRLLEIIDSVGYKDPSPIQRVSIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 429

Query: 62  IL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +       E    R   P  +IL PTRELA Q+     K+    N  V  ++GG   E 
Sbjct: 430 YISSLPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEE 489

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 490 QAYNLRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 549

Query: 175 PFT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNT 209
           P +                         RQT++++ATM   +++++  +L+ P  + +  
Sbjct: 550 PVSNEKPDTEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 609

Query: 210 PSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269
                +T+E   V   A   K+   L ++L S++     I+F N K+N   +   ++  G
Sbjct: 610 IGEAVDTVEQ-RVEFVAGEDKRKKRLAEILTSREYRPPIIVFVNIKRNCDAVARDIKHMG 668

Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329
           FS   +HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++    E+Y
Sbjct: 669 FSAVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESY 728

Query: 330 IHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
            HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ
Sbjct: 729 THRIGRTGRAGKSGVAITFLGNEDNDVLYDLKQML------MKSSISRVPEELRKHEAAQ 782

Query: 390 HNHARKN 396
               R N
Sbjct: 783 SKPIRGN 789


>gi|330822482|ref|XP_003291680.1| hypothetical protein DICPUDRAFT_156303 [Dictyostelium purpureum]
 gi|325078116|gb|EGC31785.1| hypothetical protein DICPUDRAFT_156303 [Dictyostelium purpureum]
          Length = 397

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 207/372 (55%), Gaps = 11/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  + + G+ KP+ IQ + I  +++  D    AQ+GTGKTA+F +  L  
Sbjct: 25  FESMGLGEELLRGIYNYGFEKPSAIQQRAIVPIIKGRDTIAQAQSGTGKTATFSIGALQC 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR P+ LIL PTRELA Q+        +  N+ V   +GG       KKLE G
Sbjct: 85  ID---VNVRSPQALILSPTRELAQQIQKVALALSEYMNVQVHACVGGKNMSDDIKKLETG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+LD   R  L   +I+++++DEAD ML +GF   I ++   +P   Q +L
Sbjct: 142 VHIVSGTPGRVLDMITRKSLSTRHIKMMILDEADEMLSLGFQQQINDVYRYLPEATQIVL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+T ++  ++E F+  P RI +     T + I+  FV+   +   +   C +   L 
Sbjct: 202 VSATLTQDVVTMTEKFMSKPVRILLKRDELTLDGIKQFFVSVEKEEWKFGTLCDIYDSL- 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN KK V  L   + +  F+V ++HG++ Q+ R +I+ +F+ G  +++
Sbjct: 261 ----TITQAVIFCNTKKKVDQLTEKMREANFTVASMHGDMVQKEREEIIKSFRSGENRVL 316

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+P   ENY+HRIGR+GR GR G A   V   DI+ +  
Sbjct: 317 ITTDILARGIDVQQVSLVINYDLPIDRENYLHRIGRSGRFGRKGVAINFVKNSDIRILRD 376

Query: 360 IEKLIEKKVDWL 371
           IE+    ++D +
Sbjct: 377 IEQFYSTQIDEM 388


>gi|197099360|ref|NP_001124720.1| ATP-dependent RNA helicase DDX3Y [Pongo abelii]
 gi|73620771|sp|Q5RF43|DDX3Y_PONAB RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName: Full=DEAD
           box protein 3, Y-chromosomal
 gi|55725665|emb|CAH89614.1| hypothetical protein [Pongo abelii]
          Length = 658

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 140/393 (35%), Positives = 220/393 (55%), Gaps = 25/393 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D+ +   ++  +    Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+
Sbjct: 179 NFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILS 238

Query: 62  -------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 239 QIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 298

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 299 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 358

Query: 167 IQNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 359 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 418

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             + +   K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 419 --WVEDLDKRSFLLDLLGATGRDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 476

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 477 DREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNL 536

Query: 343 GKAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
           G A +   ++++    D ++ L+E K +   WL
Sbjct: 537 GLATSFFNEKNMNITKDLLDLLVEAKQEVPSWL 569


>gi|119774410|ref|YP_927150.1| DEAD/DEAH box helicase-like protein [Shewanella amazonensis SB2B]
 gi|119766910|gb|ABL99480.1| DEAD/DEAH box helicase-like protein [Shewanella amazonensis SB2B]
          Length = 456

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 138/393 (35%), Positives = 220/393 (55%), Gaps = 12/393 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+D  L  +++ ++   G   PTPIQ + IP+ L   D+   ++TG+GKT +F+LP +
Sbjct: 1   MQFSDFSLDKRLMQSLKHMGIETPTPIQSQAIPVALAGKDLMASSKTGSGKTLAFLLPAM 60

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   +A  +  PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRVISSKALSKKDPRVLILLPTRELAQQVYAQLRLLVANTQYRAISVLGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGRI DH  +  L +N +E+LV+DEADRMLD+GF P ++ I +     R 
Sbjct: 121 AREPHFIVATPGRIADHLQQRHLFLNGLELLVLDEADRMLDLGFAPQLKAINAAADHRRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQ 236
           QTL+FSAT+   E+ +++   L+ P+ + ++        IE    +A + ++  K ALL+
Sbjct: 181 QTLMFSATLEHGEVHELAAELLKEPEHVAIDAVHLGHGDIEQQILLADHLEH--KEALLE 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL S +  +  +IF   +++   L   L ++G++  A+ G + Q  R +I+ +F     
Sbjct: 239 RLL-SGNNFRQVMIFTATRQDTERLATLLAEKGYNTAALSGELRQAQRNQIMDSFSREHH 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++V +D+A+RGLDI +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +
Sbjct: 298 RILVTTDVASRGLDISNVSLVVNFDMPKFAEEYVHRIGRTGRAGNKGTAISLVGPKDWDN 357

Query: 357 IDAIEKLIEKKVDW-----LNGDLSSLNPPLEK 384
              ++ L++K  ++     L      L P  E+
Sbjct: 358 FLKVQILLQKTFEFSVLEGLEAKFKGLAPKRER 390


>gi|332020302|gb|EGI60733.1| Putative ATP-dependent RNA helicase DDX5 [Acromyrmex echinatior]
          Length = 570

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 136/387 (35%), Positives = 212/387 (54%), Gaps = 5/387 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP +  
Sbjct: 116 FEEGGFPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 175

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I  + R +R   P  LIL PTRELA Q+      +G +  +    + GG P   Q + LE
Sbjct: 176 INHQPRLSRNDGPIALILAPTRELAQQIQQVASDFGMSSQVRNTCIFGGAPKGPQARDLE 235

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 236 RGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQT 295

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E++ ++E FL +  +I + +    A       V    +Y K+  L++ L +
Sbjct: 296 LMWSATWPKEVRNLAEEFLTDYIQINIGSLQLAANHNILQIVDVCEEYEKESKLMKLLEE 355

Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S +     IIF   K+ V ++  ++ + G+    IHG+  Q+ R  +L+ F+     ++
Sbjct: 356 ISNEPENKTIIFVETKRKVDDITRAINRYGWQAIGIHGDKSQQERDYVLNQFRNSRSAIL 415

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV  V N D P+ +E+Y+HRIGRTGR+ R G A+      +      
Sbjct: 416 VATDVAARGLDVEDVKFVINLDYPSNSEDYVHRIGRTGRSQRTGTAYAFFTPGNAHKAGD 475

Query: 360 IEKLIEKKVDWLNGDLSSL--NPPLEK 384
           + +++E+    +N  L  L  NP + K
Sbjct: 476 LIQVLEEAKQVVNPKLYDLSRNPGIYK 502


>gi|227937255|gb|ACP43273.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Gorilla gorilla]
          Length = 660

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 140/393 (35%), Positives = 220/393 (55%), Gaps = 25/393 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D+ +   ++  +    Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+
Sbjct: 179 NFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILS 238

Query: 62  -------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 239 QIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 298

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 299 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 358

Query: 167 IQNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 359 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 418

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             + +   K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 419 --WVEDLDKRSFLLDLLGATGRDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 476

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 477 DREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNL 536

Query: 343 GKAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
           G A +   ++++    D ++ L+E K +   WL
Sbjct: 537 GLATSFFNEKNMNITKDLLDLLVEAKQEVPSWL 569


>gi|218505708|ref|NP_001136206.1| predicted gene, EG668137 [Mus musculus]
          Length = 411

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 208/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 40  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISVLQC 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     +GG       +KL+ G
Sbjct: 100 LD---IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACVGGTNVGEDIRKLDYG 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 157 QHVVAGTPGRVFDMIRRRSLTTRAIKMLVLDEADEMLNRGFKEQIYDVYRYLPPATQVVL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 217 VSATLPHEILEMTNKFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 275

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC  K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 276 ----TITQAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 331

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 332 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 391

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +L+ L
Sbjct: 392 IEQYYSTQIDEMPMNLADL 410


>gi|225561576|gb|EEH09856.1| ATP-dependent RNA helicase DRS1 [Ajellomyces capsulatus G186AR]
          Length = 829

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 137/361 (37%), Positives = 201/361 (55%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L  
Sbjct: 307 FQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILER 366

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++ 
Sbjct: 367 LLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKR 426

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 427 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFTDELNEILTTIPKSRQTM 486

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMT+ + K+    L  P R+ V+    T  T+   FV     +  K+   L  L +
Sbjct: 487 LFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLIQEFVRLRPGREEKRLGYLIVLCK 546

Query: 241 S--QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +D +   I+F   KK    +       G  V  +HG++ Q  R+K + +F++G +  
Sbjct: 547 NIYKDRV---IVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRIKSVESFRDGKVSF 603

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A TL A+ D K + 
Sbjct: 604 LLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVK 663

Query: 359 A 359
           A
Sbjct: 664 A 664


>gi|195403478|ref|XP_002060316.1| GJ16043 [Drosophila virilis]
 gi|194140655|gb|EDW57129.1| GJ16043 [Drosophila virilis]
          Length = 605

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 133/361 (36%), Positives = 209/361 (57%), Gaps = 7/361 (1%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA---RVRMPRTLI 77
           Y++PTPIQ ++ P+V+  +++ GIA+TG+GKT +F+LP +  + +G+A   R   P  L+
Sbjct: 141 YIEPTPIQAQSWPIVMSGNNLVGIAKTGSGKTLAFILPAIVHI-RGQAPLERGGGPIALV 199

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           L PTRELA Q+      +G + ++    + GG P   Q   L+RG +++I TPGR+LD  
Sbjct: 200 LAPTRELAQQIQSVANDFGSSSSVRNTCIFGGSPRTKQASDLQRGVEIVIATPGRLLDFL 259

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
             G   +     LV+DEADRM+DMGF P I+ I   +   RQTL++SAT   E+++++E+
Sbjct: 260 QAGTTNLRRCTYLVLDEADRMMDMGFEPQIRKIFGQIRPDRQTLMWSATWPKEVRQLAED 319

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL--LQQLLQSQDTMKNG-IIFCNQ 254
           FL N   I + +   +A      +V   A++ K   L  L   +  Q  M    IIF   
Sbjct: 320 FLGNYIHINIGSMELSANHNIRQYVEVCAEHEKGAKLKDLLSHIYDQAAMPGKIIIFVAT 379

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           KK V  L   +   G SV +IHG+  Q  R  +L++F+ G   ++VA+D+AARGLDI  +
Sbjct: 380 KKKVDKLARFINALGVSVGSIHGDKSQMDRDNVLNDFRSGRANILVATDVAARGLDIDGI 439

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
            +V NFD P  +E+YIHRIGRTGR    G ++    +++ K   A+ +++ +    +N +
Sbjct: 440 KYVINFDFPQSSEDYIHRIGRTGRNRSTGTSYAFFTRKNAKCARALIEVLREANQIVNPE 499

Query: 375 L 375
           L
Sbjct: 500 L 500


>gi|167527009|ref|XP_001747837.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773586|gb|EDQ87224.1| predicted protein [Monosiga brevicollis MX1]
          Length = 532

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 139/360 (38%), Positives = 207/360 (57%), Gaps = 15/360 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA  GL   +   +  A Y  PTP+Q  +IP+V  + D+   AQTG+GKTA+F++P+L 
Sbjct: 161 EFATAGLCELMTGNLELARYTVPTPVQKYSIPIVQAKRDLMACAQTGSGKTAAFLVPILN 220

Query: 62  -ILEKG--------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            + E G        R   + P  LIL PTRELA Q+    +K+     + +  + GG   
Sbjct: 221 RVYETGPVPPPPNARRSQQFPVALILAPTRELAIQIYGEAQKFSYRSRVRICCVYGGASP 280

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q + L RG  +L+ TPGR++D   RG + +++I  LV+DEADRMLDMGF P I+ I  
Sbjct: 281 RDQIQDLRRGCQLLVATPGRLVDFMERGVIGLDSIRFLVLDEADRMLDMGFEPQIRRIVE 340

Query: 173 L--VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
              +P    RQTL+FSAT   ++Q ++++FL +   + V    ST+E I+   V    + 
Sbjct: 341 EDNMPQVGIRQTLMFSATFPKDIQMLAQDFLDDYVHLSVGRVGSTSENIQQ-IVHWIDEA 399

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            K+ +LL  L+ +  +    +IF   KK    L + L  QG    +IHG+  Q  R + L
Sbjct: 400 DKRPSLLD-LISAASSEDLFLIFVETKKAADALEYYLTMQGRPATSIHGDRTQYEREEAL 458

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           ++F+ G   ++VA+ +AARGLDIP+V HV NFD+P+  + Y+HRIGRTGRAG  G A + 
Sbjct: 459 ADFRAGRRPILVATAVAARGLDIPNVKHVINFDLPSDIDEYVHRIGRTGRAGHKGTAVSF 518


>gi|73996616|ref|XP_534818.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 1 [Canis familiaris]
          Length = 801

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 145/424 (34%), Positives = 220/424 (51%), Gaps = 66/424 (15%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQ 115
           +      ++     + P  +IL PTRELA Q+ +   K+GK   + TVA           
Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVA----------- 501

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
                    ++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 502 ---------IVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMP 552

Query: 176 FT--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNT 209
            +                          RQT++F+ATM   +++++ ++L+ P  + + +
Sbjct: 553 VSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 612

Query: 210 PSSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
                E +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK
Sbjct: 613 AGKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEK 667

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            G++ C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E
Sbjct: 668 MGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIE 727

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
           +YIHRIGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     
Sbjct: 728 DYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPD 781

Query: 388 AQHN 391
           AQH 
Sbjct: 782 AQHK 785


>gi|115910860|ref|XP_001177628.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68
           [Strongylocentrotus purpuratus]
 gi|115968720|ref|XP_001178951.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68 isoform 1
           [Strongylocentrotus purpuratus]
          Length = 600

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 129/387 (33%), Positives = 216/387 (55%), Gaps = 14/387 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            +F +      V+  +  +G+  PTPIQ +  P+ L   D+ GIA TG+GKT S++LP +
Sbjct: 109 FEFHEASFPDYVMGELSKSGFSHPTPIQAQGWPVALSGRDLVGIAATGSGKTLSYLLPSI 168

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G   V  P  L+L PTRELA QV      +G++  +    + GG P   
Sbjct: 169 VHINHQPFLERG---VDGPIALVLAPTRELAQQVQQVAFAFGRSSKIKSTCVYGGAPKGQ 225

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D     K  +     +V+DEADRMLDMGF P I+ I   +
Sbjct: 226 QIRDLERGVEICIATPGRLIDFLENNKTNLRRCTYVVLDEADRMLDMGFEPQIRKIMEQI 285

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN--TPSSTAETIEHCFVATYAQYSKK- 231
              RQ  ++SAT   +++ ++E+F+++   + +   T S+    ++   V   ++  KK 
Sbjct: 286 RPDRQVQMWSATWPKDVRNLAEDFIRDYIMVNIGSLTLSANHNILQIIDVCEDSEKDKKL 345

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL++++Q +D     ++FC  K+   +L   + + G+    +HG+  Q  R  +LS F
Sbjct: 346 IQLLEEIMQEKDN--KTLVFCETKRRTDDLVRRMRRDGWPAMCLHGDKSQPERDWVLSEF 403

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           ++G   ++VA+D+A+RGLD+ D+  V N+D PN +E+Y+HRIGRT R+ R G A+T   +
Sbjct: 404 RDGRAPILVATDVASRGLDVTDIKFVINYDYPNSSEDYVHRIGRTARSTRTGTAYTFFTR 463

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            ++K    +  ++++    +N  L SL
Sbjct: 464 NNMKQAADLINVLQEAKQVINPKLISL 490


>gi|146300600|ref|YP_001195191.1| DEAD/DEAH box helicase domain-containing protein [Flavobacterium
           johnsoniae UW101]
 gi|146155018|gb|ABQ05872.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae
           UW101]
          Length = 444

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 132/363 (36%), Positives = 221/363 (60%), Gaps = 10/363 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ LG+S  ++ A+ +   V+PT IQ KTIPL+L + HDV G+A+TGTGKTA+F LP+L 
Sbjct: 5   FSTLGISEPILKALSELNIVEPTEIQQKTIPLLLAENHDVVGLAKTGTGKTAAFGLPLLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           +++   + V+    +IL PTREL  Q+  N E + K   N+++A   GGIP + Q ++L+
Sbjct: 65  LIDTKSSAVQ---AVILVPTRELGHQIFRNLEDFSKYIPNISIAATCGGIPIKPQIERLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR++D   R  + +   + LV+DEAD M+ +     +  I + +P   +T
Sbjct: 122 TPTHIIVATPGRLIDLIQRKAVDLKQTQYLVLDEADEMVSI-LKESLDEILTEIPKKHRT 180

Query: 181 LLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+   ++++ +N+L +N  ++  +      + I+H ++       +K  +L   L
Sbjct: 181 LLFSATLPGTIKQLVQNYLNKNVVQVSASMEVVGNQGIDHQYIV--VDPIEKLDVLMHFL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S++  + GIIFC  K  V  L  +L    FS  AIHG++ Q  R +I+  F+EG I ++
Sbjct: 239 NSREG-ERGIIFCKTKAAVNKLAKNLAINRFSSGAIHGSLTQGIRDRIMEQFREGHINIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+D+ ++ +V N+ +P+  E Y+HR GRT RAG +G + T++ +E++  I  
Sbjct: 298 VATDLAARGIDVKEISYVVNYHLPDAYETYVHRSGRTARAGANGLSLTVLQEEEVFEIAD 357

Query: 360 IEK 362
            E+
Sbjct: 358 FER 360


>gi|302340274|ref|YP_003805480.1| DEAD/DEAH box helicase [Spirochaeta smaragdinae DSM 11293]
 gi|301637459|gb|ADK82886.1| DEAD/DEAH box helicase domain protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 541

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 140/430 (32%), Positives = 229/430 (53%), Gaps = 19/430 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   V+  + DAG+    P+Q  T+   LQ  DV   +QTG+GKTA+F++ + 
Sbjct: 1   MKFEEFNLHEDVLAGIKDAGFEACMPVQEATLKETLQGKDVTVQSQTGSGKTAAFLVTIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                 +   R   T+I+ PTRELA Q+ D  +  G +  + +    GG+ ++ Q + L+
Sbjct: 61  QRWCTTKPEERRS-TMIISPTRELAVQIEDEAKLLGAHMGMNIGCFYGGVGYKQQEEALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTR 178
           +G D+ I TPGR++D     K+    I  +VIDEADR+ DMGF P I+ +  ++     R
Sbjct: 120 KGVDLYIGTPGRLIDFGQNRKIDFTTIGTVVIDEADRLFDMGFYPDIRRMLKMMGPREKR 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            T+LFSAT+  ++  V+   +  P  + +     T   I       + +  KK +L+  L
Sbjct: 180 MTMLFSATLGTKVLNVAWEHMNMPVEVSIEPEHITVREITQELY--HVEGEKKFSLMLGL 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+  D   N IIF N K   V +   L + G++   + G++ Q+ R+  +   K G I+ 
Sbjct: 238 LKKYDP-PNAIIFTNMKVTAVEVAKRLSRNGYAAKFLMGDLPQKKRLSTIDRVKHGEIRF 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGL + D+  V N+D+P   E+Y+HRIGRT RAG+ G+A TL  +  +  ++
Sbjct: 297 LVATDVAARGLHVDDLAMVINYDIPEDPESYVHRIGRTARAGKSGRAITLACERYVYGLE 356

Query: 359 AIEKLIEKK--VDWLNGDLSSLNPPLEKIDI-AQHNHA------RKNNPIPQKSTGFDRR 409
            IE+L+E+K  V+W + D   L      ID  +++  A       K   +PQ + G   R
Sbjct: 357 PIEQLLEQKIPVEWAD-DALFLEDKSAGIDFRSEYRRASSSGTRSKGRAVPQGTKG---R 412

Query: 410 KKNYSSQKSH 419
           +K+   + +H
Sbjct: 413 RKDSGGRDTH 422


>gi|261204854|ref|XP_002627164.1| ATP-dependent RNA helicase ded1 [Ajellomyces dermatitidis SLH14081]
 gi|239592223|gb|EEQ74804.1| ATP-dependent RNA helicase ded1 [Ajellomyces dermatitidis SLH14081]
          Length = 692

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 139/365 (38%), Positives = 206/365 (56%), Gaps = 18/365 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +  L   ++  +L A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 201 FTNPPLHEHLLSNILLARYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQ 260

Query: 62  ILEK-----------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
            L +           GR +   P  LIL PTREL +Q+ +   K+     L   ++ GG 
Sbjct: 261 SLHRRGPEAEATRGLGRQQKAYPTALILGPTRELVSQIYEEARKFCYRTALHPRVVYGGA 320

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L++G +VL+ TPGR++D   RG++ + +I+ LV+DEADRMLDMGF P I+ I
Sbjct: 321 EMGNQLRQLDQGCNVLVATPGRLVDMMERGRISLAHIQYLVLDEADRMLDMGFEPQIRRI 380

Query: 171 T--SLVP--FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
              S +P    RQTL+FSAT   ++QK++E FL++   + V    ST+E I    V   +
Sbjct: 381 VQGSDMPDKHMRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRVVECES 440

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              K  ALL  L    D+    ++F   K+    L   L        AIHG+  QR R +
Sbjct: 441 DKDKDSALLDILC--TDSTGLTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERER 498

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G   ++VA+ +AARGLDIP+V HV N+D+PN  ++Y+HRIGRTGRAG  G + 
Sbjct: 499 ALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGIST 558

Query: 347 TLVAK 351
              ++
Sbjct: 559 AFFSR 563


>gi|195385611|ref|XP_002051498.1| vas [Drosophila virilis]
 gi|21361025|gb|AAM49782.1|AF513908_1 DEAD-box RNA helicase [Drosophila virilis]
 gi|194147955|gb|EDW63653.1| vas [Drosophila virilis]
          Length = 625

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 126/346 (36%), Positives = 207/346 (59%), Gaps = 10/346 (2%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRA-R 69
           V+  V+ +GYV PTPIQ  +IP++ +  D+   AQTG+GKTA+F+LP+L  IL++     
Sbjct: 222 VLDNVVKSGYVVPTPIQKVSIPVIAEGRDLMACAQTGSGKTAAFLLPILNNILDESHDLE 281

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           +  P+ +I+ PTRELA Q+ +   K+     L ++++ GG  F+ QN+ + +G  VLI T
Sbjct: 282 IGKPQAVIVSPTRELAIQIFNEARKFSYTTYLKISIVYGGTSFKYQNECITKGCHVLIAT 341

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---SLVPFTRQTLLFSAT 186
           PGR+LD  +R  +  ++   +V+DEADRMLDMGF   ++ I    ++ P   QTL+FSAT
Sbjct: 342 PGRLLDFVDRTFITFDDTRFIVLDEADRMLDMGFSDSMRKIMHHQTMRP-EHQTLMFSAT 400

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             +E+Q+++  FL+N   + +         ++   V    +++K+  L++ L +  D   
Sbjct: 401 FPEEIQRMAGEFLKNYVFVTIGVVGGACSDVQQT-VYEVNKFNKRSKLMEILREGADGT- 458

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+F   K+    L     +  F   +IHG+  Q  R + L +FK GT+++++A+ +A+
Sbjct: 459 --IVFVETKRGADFLASFFSETEFPTTSIHGDRLQSQREQALRDFKTGTMKVLIATSVAS 516

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           RGLDI +V HV N+D+P   ++Y+HRIGRTGR G  G+A +    E
Sbjct: 517 RGLDIKNVKHVINYDMPTNIDDYVHRIGRTGRVGNSGRATSFFDPE 562


>gi|170105186|ref|XP_001883806.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164641441|gb|EDR05702.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 662

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 140/364 (38%), Positives = 201/364 (55%), Gaps = 23/364 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F    L P ++  +  A Y  PTP+Q  +IP+V    D+   AQTG+GKT  F+ P+L
Sbjct: 176 LSFTSPPLDPVLLENIGFAMYTTPTPVQKYSIPIVAGGRDLMACAQTGSGKTGGFLFPIL 235

Query: 61  TIL---------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105
           +                   GRAR   P  LIL PTREL +Q+ D   K+     +  A+
Sbjct: 236 SASFAEGPRPPPAQSSAGGYGRARKAYPTALILAPTRELVSQIHDEARKFAYRSWVRPAV 295

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG     Q + +ERG D+L  TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P
Sbjct: 296 VYGGADINQQLRLIERGCDLLSATPGRLVDLIERGRISLANIKYLVLDEADRMLDMGFEP 355

Query: 166 YIQNITSL--VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
            I+ I     +P T  RQTL+FSAT   ++Q ++++FL++   + V    ST+E I    
Sbjct: 356 QIRRIVQGEDMPSTADRQTLMFSATFPRDIQMLAKDFLKDYVFLSVGRVGSTSENITQKI 415

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
              Y +   K ++L  +L SQ     G  ++F   K+    L   L        +IHG+ 
Sbjct: 416 --EYVEDLDKRSVLLDILASQPKEDLGLTLVFVETKRMADMLSDFLMGNNLPATSIHGDR 473

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            QR R   L  F+ G   +MVA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRA
Sbjct: 474 TQREREMALQTFRTGRTPIMVATAVAARGLDIPNVTHVVNYDLPSDIDDYVHRIGRTGRA 533

Query: 340 GRHG 343
           G  G
Sbjct: 534 GNTG 537


>gi|320589197|gb|EFX01659.1| dead deah box DNA helicase [Grosmannia clavigera kw1407]
          Length = 734

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 130/391 (33%), Positives = 211/391 (53%), Gaps = 35/391 (8%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK-- 65
           L P+++  V   GY +PTPIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L  +++  
Sbjct: 310 LPPRLLDVVEAVGYTEPTPIQRAAIPIALQGRDLIGVAVTGSGKTAAFLLPLLVYIKELP 369

Query: 66  ---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                ++   P  LIL PTRELA Q+     K+   +  TV  ++GG   E Q   L  G
Sbjct: 370 PLDEISKNDGPYALILAPTRELAQQIESEARKFATPFGYTVVSIVGGHSLEEQAYALRNG 429

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177
           A++++ TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +P       
Sbjct: 430 AEIVVATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEDPLNKILDAMPTANEKPD 489

Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
                               R+T++++ATM   ++K+++ +L+ P  + +       ET+
Sbjct: 490 TDEAEDARAMTQYLGGKIRYRETMMYTATMPPVVEKIAKRYLRRPAIVTIGNVGEAVETV 549

Query: 218 EHC--FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
           E    FV+   +  K+   LQ++LQS       I+F N K+N   +   + + GF+   +
Sbjct: 550 EQRVEFVSGEDRRKKR---LQEILQSGQFAAPIIVFVNIKRNCEMVAKDVRQMGFTTVTL 606

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG+  Q  R   L   ++G   ++VA+DLA RG+D+ DV  V NF++    E Y HRIGR
Sbjct: 607 HGSKTQDQREAALQALRQGKADVLVATDLAGRGIDVADVSLVINFNMATSVEQYTHRIGR 666

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           TGRAG+ G A T +  ED   +  ++++I K
Sbjct: 667 TGRAGKSGVAITFLGGEDSDVLYDLKQMISK 697


>gi|291001041|ref|XP_002683087.1| DEAD-box ATP-dependent RNA helicase [Naegleria gruberi]
 gi|284096716|gb|EFC50343.1| DEAD-box ATP-dependent RNA helicase [Naegleria gruberi]
          Length = 887

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 135/359 (37%), Positives = 211/359 (58%), Gaps = 11/359 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ LS  ++ A+ + GY  PTPIQ + IPL+L+  D+C  A TG+GKTA+F+LP L  
Sbjct: 271 FNDMNLSRPLLKAIYEKGYEHPTPIQSRCIPLLLKGRDICASAMTGSGKTAAFILPTLER 330

Query: 62  ILEKGRARVRMPRTLI--LEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKK 118
           +L + R+R     TL+  L PTRELAAQ  ++   + +  ++   L+ GG +  + Q + 
Sbjct: 331 LLYRDRSR---KETLVVALLPTRELAAQCYEDCSHFLQYTDIRCCLITGGNLKIQKQIQV 387

Query: 119 LERGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+   +++I TPGR++DH  N     ++ +E+L++DEADR+L++GF P I+ I   +P  
Sbjct: 388 LQSKPEIIIATPGRVVDHLLNSPNFRLDEVEVLILDEADRLLELGFEPQIKTILDHIPTA 447

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV--ATYAQYSKKCALL 235
           RQT+LFSATMTD+++++ +  L+NP R+  ++ +  A  +   F+  A       K A+L
Sbjct: 448 RQTMLFSATMTDDIEQLVKLSLKNPIRVSCDSRTGVASGLTQEFIKLADDENIIMKQAIL 507

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L  ++      IIFCN K  V  L   L  +G  V  +  ++ Q  R+K L  F    
Sbjct: 508 LSLC-TRSFPSEVIIFCNTKSMVRKLKMLLFLKGLKVSELSSSLTQAVRLKELYKFASHE 566

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +V +D+A+RGLDI  V  V NFD+P   + YIHR+GRT RAG  G A ++ ++  I
Sbjct: 567 TDFLVCTDVASRGLDIKGVKTVINFDMPLNLKTYIHRVGRTARAGASGVAVSMSSESSI 625


>gi|221123619|ref|XP_002156523.1| PREDICTED: PL10-related protein CnPL10 [Hydra magnipapillata]
          Length = 628

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 208/364 (57%), Gaps = 20/364 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +  L   ++  +  A Y KPTP+Q  +IP++  + D+   AQTG+GKTA+F++P+L+ 
Sbjct: 173 FDEANLGEIILTNISLAHYTKPTPVQKNSIPIIKAKRDLMACAQTGSGKTAAFLVPILSR 232

Query: 62  ILE-----------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           I E           +G  + + P  L+L PTRELA+Q+ D   K+     +   ++ GG 
Sbjct: 233 IFEEGPFENPSNVRQGGKKKQYPIALVLAPTRELASQIYDESRKFVYRSCIRPCVVYGGA 292

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q + ++RG  +L+ TPGR++D   RGK+ +  I+ LV+DEADRMLDMGF P I+ I
Sbjct: 293 DVSTQMRDIDRGCHLLVATPGRLVDMIQRGKVGLECIKFLVLDEADRMLDMGFEPQIREI 352

Query: 171 TSL--VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                +P T  RQTL+FSAT   E+Q ++ +FL N   + V    ST+E I    V  + 
Sbjct: 353 VEKCDMPRTGERQTLMFSATFPKEIQMLARDFLDNYIFLAVGRVGSTSENITQKVV--WV 410

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK--QGFSVCAIHGNIDQRSR 284
           +   K   L  LL +       ++F   K+    L   L +  + +   +IHG+  Q+ R
Sbjct: 411 EEHDKREFLLDLLNASGPDSLTLVFVETKRGADALEQFLFRCPENYHATSIHGDRHQKER 470

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + L++F+ GT  ++VA+ +AARGLDIP+V HV NFD+P+  E Y+HRIGRTGR G  G 
Sbjct: 471 EQALASFRVGTTPILVATAVAARGLDIPNVKHVINFDMPSDIEEYVHRIGRTGRVGHTGL 530

Query: 345 AFTL 348
           A + 
Sbjct: 531 ATSF 534


>gi|242021756|ref|XP_002431309.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212516577|gb|EEB18571.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 675

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 133/381 (34%), Positives = 210/381 (55%), Gaps = 3/381 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+D      V   +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP +
Sbjct: 122 MYFSDANWPDYVQREIQKQGFTEPTAIQAQGWPIALSGMDMVGIAQTGSGKTLAYILPAI 181

Query: 61  T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             I  + R  R   P  L+L PTRELA Q+      +G +  +    + GG P   Q + 
Sbjct: 182 VHINHQPRLLRGEGPIVLVLAPTRELAQQIQQVACDFGTSSAVRNTCIFGGAPKMLQARD 241

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G ++ I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 242 LESGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 301

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L++SAT   E+++++E FL +  +I + +   +A       V   ++Y K+  LL+ L
Sbjct: 302 QVLMWSATWPKEVRRLAEEFLNDYVQINIGSLQLSANHNILQIVDVCSEYEKQTKLLKLL 361

Query: 239 LQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            + + +     +IF   KK V  +  ++ + G+   AIHG+  Q  R  +L+ F+ G + 
Sbjct: 362 NEIANEPETKTMIFVETKKKVDEIARAVTRYGYQALAIHGDKSQSDRDYVLNQFRCGRVN 421

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+ DV  V NFD PN +E+Y+HRIGRTGR  + G A+T     ++   
Sbjct: 422 ILVATDVAARGLDVDDVKFVINFDYPNNSEDYVHRIGRTGRHDKTGTAYTFFTPSNVNKA 481

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             +  ++++    +N  L  L
Sbjct: 482 GDLVAVLQEANQVVNPKLYEL 502


>gi|110004511|emb|CAK98848.1| putative atp-dependent rna helicase protein [Spiroplasma citri]
          Length = 443

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 141/422 (33%), Positives = 227/422 (53%), Gaps = 18/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  L L P +   +   GY   T IQ K IP+ L   D+ G + TGTGKT +F++P  
Sbjct: 1   MNFNTLNLYPALQRMIAKMGYTNLTEIQEKAIPVALNSQDIIGKSHTGTGKTVAFIVP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
            IL+     ++ P+ +IL PT ELA+Q+ +   K+      +   L+ GG   + Q   L
Sbjct: 59  -ILQNLNTHLKQPQAIILCPTHELASQIIEQVRKFATYLEGVNATLICGGSHIQRQIYAL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R +++++ TPGRI DH NR  L ++ I+ +V+DEAD ML MGF   +  +    P   Q
Sbjct: 118 -RKSNIIVGTPGRIADHINRKTLRLDKIKTIVLDEADEMLKMGFKTDLDKVFQNAPNKYQ 176

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  ++ +++ N+  NP  I V         I   +V   + Y K+  L+    
Sbjct: 177 TLLFSATMPKQVLEIANNYQTNPVEIVVTKNVIEQNNISQHYVNAIS-YHKEDVLIALYK 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   K  IIF N K     +   L   G   C I+G+  +  R + +  F++G +++M
Sbjct: 236 HLQP--KRSIIFSNTKVFTNKIAEMLTNNGIPCCIINGDKSRYERGQAMRLFRDGKVRVM 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           VA+D+AARG+DI ++ +V N+D+P   E+YIHRIGRT RAG  G A ++V+ + D++ I 
Sbjct: 294 VATDVAARGIDIDNIDYVINYDIPTERESYIHRIGRTARAGATGVAISIVSNRNDLREIQ 353

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +    +KK++ L  D+++        D+ Q    RKN     K + F+++  ++  + S
Sbjct: 354 HLGAYQKKKIELL--DITTY-------DLKQKPQERKNFSTNHKKSAFNKKNNSFKYEDS 404

Query: 419 HI 420
           ++
Sbjct: 405 YL 406


>gi|308803500|ref|XP_003079063.1| putative DEAD-box RNA helicase DEAD3 (ISS) [Ostreococcus tauri]
 gi|116057517|emb|CAL51944.1| putative DEAD-box RNA helicase DEAD3 (ISS) [Ostreococcus tauri]
          Length = 492

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 134/338 (39%), Positives = 195/338 (57%), Gaps = 13/338 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRA-----RVRMPR 74
           + KPTP+Q   IP  LQ  D+   AQTG+GKTA+F  P++  IL+KG       R   P 
Sbjct: 18  FKKPTPVQKYAIPSALQGRDLMACAQTGSGKTAAFCFPIIAGILKKGLQGGHMNRKTYPL 77

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTRELA+Q+ +   K+     +   ++ GG P   Q + +ERG D+LI TPGR++
Sbjct: 78  ALVLSPTRELASQIHEESRKFAYQTGVASCVIYGGAPAVEQFRAMERGCDLLIATPGRLI 137

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS---LVPF-TRQTLLFSATMTDE 190
           D  +R K+ ++    L +DEADRMLDMGF P I+ I     + P   RQT+LFSAT   E
Sbjct: 138 DLIDRAKISLSRCVYLALDEADRMLDMGFEPQIRQIVEQRDMPPCGERQTMLFSATFPRE 197

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGII 250
           +Q+++ +FL +   + V    S+   I    V     Y +K  +L  L+++   +   ++
Sbjct: 198 IQRMAADFLDDYIFLTVGRVGSSHALITQS-VERVNSYHEKSEMLLDLVEAVPGLT--LV 254

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F   K+    L   L   G    +IHG+  Q+ R   L +F+ G   ++VA+D+AARGLD
Sbjct: 255 FVETKRGADQLEDFLFTNGKPATSIHGDRTQQEREAALKSFRSGKTPILVATDVAARGLD 314

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           IP V HV NFD+P+  ++Y HRIGRTGRAG+ G+A  L
Sbjct: 315 IPHVTHVINFDLPSDIDDYTHRIGRTGRAGKKGRATAL 352


>gi|187957004|gb|AAI58084.1| EG434080 protein [Mus musculus]
          Length = 411

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 132/381 (34%), Positives = 209/381 (54%), Gaps = 11/381 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L
Sbjct: 38  LTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVL 97

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+
Sbjct: 98  QCLD---IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD 154

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q 
Sbjct: 155 YGQHVVAGTPGRVFDMIRRRSLPTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 214

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQ 237
           +L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   
Sbjct: 215 VLISATLPHEILEMTNKFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT 274

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L     T+   +IFC  K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +
Sbjct: 275 L-----TITQAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR 329

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +
Sbjct: 330 VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRIL 389

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             IE+    ++D +  +L+ L
Sbjct: 390 RDIEQYYSTQIDEMPMNLADL 410


>gi|300705325|ref|YP_003746928.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Ralstonia
           solanacearum CFBP2957]
 gi|299072989|emb|CBJ44346.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Ralstonia
           solanacearum CFBP2957]
          Length = 435

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 140/370 (37%), Positives = 208/370 (56%), Gaps = 14/370 (3%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84
           TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  L+  R  V+    ++L PTREL
Sbjct: 2   TPIQAASLPIALAGHDLIAQAKTGSGKTAAFALALLAQLDARRFDVQ---AMVLCPTREL 58

Query: 85  AAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           A QVA    +  +   N+ V  L GG P   Q   LE GA V++ TPGRI+DH  RG L 
Sbjct: 59  ADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEHGAHVVVGTPGRIMDHLERGNLA 118

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           +  ++ LV+DEADRMLDMGF   I  +    P  RQTLLFSAT  D + K+S   L+NPK
Sbjct: 119 LGALKTLVLDEADRMLDMGFFDDIATVVRQCPPERQTLLFSATYPDGIAKLSRQILRNPK 178

Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
            +++      ++  +  +  T  +      LL +  +   T+     FCN K+   +L  
Sbjct: 179 EVKLEERHDDSKIRQRFYEVTDDKRLHAVGLLLKHYRPVSTLA----FCNTKQQCRDLLD 234

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
            L  QG     +HG ++QR R ++L  F   +  ++VA+D+AARGLDI  +  V N DV 
Sbjct: 235 VLRAQGIHALTLHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVT 294

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDL------SS 377
              E ++HRIGRTGRA + G A +L + +++  +  IE+++ ++V+W   D       + 
Sbjct: 295 PDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGNIEEVLGREVEWHRLDEFDASSDAP 354

Query: 378 LNPPLEKIDI 387
           L PP+E + I
Sbjct: 355 LLPPMETLQI 364


>gi|326477553|gb|EGE01563.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Trichophyton
           equinum CBS 127.97]
          Length = 812

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 130/384 (33%), Positives = 209/384 (54%), Gaps = 35/384 (9%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +++ GL PK +  ++D+ GY  P+PIQ  +IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 371 WSESGL-PKRLLEIIDSVGYKDPSPIQRVSIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 429

Query: 62  IL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +       E    R   P  +IL PTRELA Q+     K+    N  V  ++GG   E 
Sbjct: 430 YISSLPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEE 489

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 490 QAYNLRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 549

Query: 175 PFT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNT 209
           P +                         RQT++++ATM   +++++  +L+ P  + +  
Sbjct: 550 PVSNEKPDTEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 609

Query: 210 PSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269
                +T+E   V   A   K+   L ++L S++     I+F N K+N   +   ++  G
Sbjct: 610 IGEAVDTVEQ-RVEFVAGEDKRKKRLAEILTSREYRPPIIVFVNIKRNCDAVARDIKHMG 668

Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329
           FS   +HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++    E+Y
Sbjct: 669 FSAVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESY 728

Query: 330 IHRIGRTGRAGRHGKAFTLVAKED 353
            HRIGRTGRAG+ G A T +  ED
Sbjct: 729 THRIGRTGRAGKSGVAITFLGNED 752


>gi|313633504|gb|EFS00323.1| ATP-dependent RNA helicase DbpA [Listeria seeligeri FSL N1-067]
 gi|313638189|gb|EFS03441.1| ATP-dependent RNA helicase DbpA [Listeria seeligeri FSL S4-171]
          Length = 470

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 129/347 (37%), Positives = 198/347 (57%), Gaps = 17/347 (4%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML--TI 62
           +L LS ++  A+ + GY + TP+Q + IP+ L   D+   +QTG+GKTA+F +P+    I
Sbjct: 3   NLKLSEEIKRAINELGYKEATPVQKEVIPVALTGKDIVAKSQTGSGKTAAFAIPIAEQVI 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E+ +     P+ LI+ PTREL  QV       G+   +  A + G  PF  Q  +L + 
Sbjct: 63  WEENK-----PQALIIVPTRELGVQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELSQK 117

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L ++ +  LV+DE D ML MGFI  +++I   +P  RQ L 
Sbjct: 118 NHIVVGTPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLSMGFIDQVEDILQFLPKKRQNLF 177

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM DE+Q + + + ++P  IE+   +     I H  +    Q   K   LQ +L ++
Sbjct: 178 FSATMPDEMQDLIKRYQEDPVVIEM--AAEKTNPITHIEM----QTENKEKTLQDVLITE 231

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFCN K  V  L   L+    +   IHG + Q  R + + +FK G  + ++A+
Sbjct: 232 NP-DSAIIFCNTKNQVDELSDLLQ---VNAAKIHGGLRQEERFRAMDDFKSGKSRFLIAT 287

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+A RG+D+ +V  V N+D+P   ENY+HRIGRTGRAG  GKA + V
Sbjct: 288 DVAGRGIDVENVTLVINYDLPIEKENYVHRIGRTGRAGNSGKAISFV 334


>gi|257815096|gb|ACV69940.1| vasa [Osphronemus goramy]
          Length = 653

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 145/416 (34%), Positives = 225/416 (54%), Gaps = 41/416 (9%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L  ++  G A  R   
Sbjct: 233 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASRFSE 292

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  LI+ PTREL  Q+     K+     +   ++ GG+    Q +++ RG +VL  T
Sbjct: 293 LQEPEALIVAPTRELINQIYLEARKFSFGTCVRPVVVYGGVSTAHQIREISRGCNVLCGT 352

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR+LD   RGK+ ++ +  LV+DEADRMLDMGF P ++ +           RQTL+FSA
Sbjct: 353 PGRLLDVIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPSKENRQTLMFSA 412

Query: 186 TMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +++Q+++ +FL+     + V         +E  FV    ++SK+  LL  LL++  T
Sbjct: 413 TYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFVQV-TKFSKREQLLD-LLKTTGT 470

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   K+    +   L ++     +IHG+ +QR R + L++F+ G   ++VA+ +
Sbjct: 471 ERT-MVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSV 529

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH-----IDA 359
           AARGLDIPDV HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H     +  
Sbjct: 530 AARGLDIPDVQHVVNFDLPSNIDEYVHRIGRTGRCGNTGRAVSFYDPEADGHLARSLVGV 589

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           + K  ++   WL                     A  + P    STGF+  +KN++S
Sbjct: 590 LSKAQQEVPSWL-------------------EEAAFSGP---SSTGFNPPRKNFAS 623


>gi|166014135|gb|ABY77970.1| vasa [Thunnus orientalis]
          Length = 644

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 133/359 (37%), Positives = 208/359 (57%), Gaps = 14/359 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 208 MTFDEAALCESLRKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 267

Query: 61  T-ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G A  R      P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 268 QQLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGH 327

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q +++ERG +V+  TPGR+LD   RGK+ ++ +  LV+DEADRMLDMGF P ++ +    
Sbjct: 328 QIREIERGCNVVCGTPGRLLDMIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRRLVGSP 387

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +++Q+++ +FL+     + V         +E  F+    ++S
Sbjct: 388 GMPSKENRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQV-TKFS 446

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL  LL++  T +  ++F   K+    +   L ++     +IHG+ +QR R + L+
Sbjct: 447 KREQLLD-LLKTTGTERT-MVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALA 504

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +F+ G   ++VA+ +AARGLDIPDV HV NFD+PN  + Y+HRIGRTGR G  G+A + 
Sbjct: 505 DFRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSF 563


>gi|157119649|ref|XP_001653435.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108875244|gb|EAT39469.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 911

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 136/370 (36%), Positives = 206/370 (55%), Gaps = 5/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF +      V+  +   G+  PT IQ +  P+ L   D+ GIAQTG+GKT +++LP + 
Sbjct: 230 DFEEGNFPDFVMNEINKMGFPNPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYMLPGIV 289

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNK 117
            +  +K   R   P  L+L PTRELA Q+      +G +    +    + GG     Q +
Sbjct: 290 HIAHQKPLQRGEGPVVLVLAPTRELAQQIQTVVRDFGTHSKPLIRYTCIFGGALKGPQVR 349

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LERG +V+I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   
Sbjct: 350 DLERGVEVVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 409

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ L++SAT   E+Q ++E+FL +  +I + + + +A    H  V    +  K+  LL  
Sbjct: 410 RQVLMWSATWPKEVQALAEDFLHDYIQINIGSLNLSANHNIHQIVDVCEEGEKEGKLLSL 469

Query: 238 LLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L + S D     IIF   KK V +L  ++ + G+   +IHG+  Q  R  +L +F+ G  
Sbjct: 470 LKEISSDVNSKIIIFVETKKKVEDLLKNIVRDGYGATSIHGDKSQSERDYVLQDFRHGKS 529

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+ DV +V NFD PN +E+YIHRIGRTGR   +G A+T     + + 
Sbjct: 530 TILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCSSYGTAYTFFTPGNGRQ 589

Query: 357 IDAIEKLIEK 366
              +  ++E+
Sbjct: 590 ARELLSVLEE 599


>gi|330812282|ref|YP_004356744.1| ATP-independent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380390|gb|AEA71740.1| putative ATP-independent RNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 560

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 214/369 (57%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 107 FNTLPLSAAMLANLESLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 166

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  +   N+ V  L GG+ F  Q   LE 
Sbjct: 167 INP---RFFGCQALVMCPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSFGPQIASLEH 223

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I++I    P  RQTL
Sbjct: 224 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIIQQTPERRQTL 283

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F++NP++++     S A+ IE  F     +  +  A+++ L   
Sbjct: 284 LFSATYPVGIKQLSSKFMRNPQQVKAEAFHSDAQ-IEQRFYEISPE-ERMDAVVKVLAHF 341

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + + FC  K+ V      L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 342 RPA--SCVAFCFTKQQVQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 399

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  +     AIE
Sbjct: 400 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAISLVAPSEAHRAQAIE 459

Query: 362 KLIEKKVDW 370
           +L +  + W
Sbjct: 460 QLQKSPLSW 468


>gi|255656171|ref|ZP_05401580.1| ATP-dependent RNA helicase [Clostridium difficile QCD-23m63]
          Length = 497

 Score =  236 bits (601), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 131/373 (35%), Positives = 220/373 (58%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L+ K++ ++    Y  P+ +QI+ IP +L   ++   ++TG+GKTASF +P+   
Sbjct: 5   FEKFKLNEKILKSLKSLEYNIPSRVQIEVIPKLLNGQNLVVKSKTGSGKTASFAIPLC-- 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E         + LI+ PTRELA QV D     G+   +  + + G  P + Q  +L++ 
Sbjct: 63  -ENINVEYNNIQALIVVPTRELALQVKDEISSIGRLRKVRCSAIFGKQPIKEQIAELKQR 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRI+DH N+G + + NI+ L+IDEAD+M + GF+  ++ I   +P  +   L
Sbjct: 122 VHIVVATPGRIIDHINKGTIKLENIKYLIIDEADKMFNKGFVEQMEKILLNLPKEKIVGL 181

Query: 183 FSATMTDELQKVSENFLQNPK--RIEVNTPSSTAET--IEHCFVATYAQYSKKCALLQQL 238
           FSAT+ +E++ + E ++ +     IE N   +   T  I+   + T  +  +K  LL++L
Sbjct: 182 FSATIDEEIKYICEKYIPDYSVINIEENKSDTNQRTRQIDDKIIKTNER--EKYILLKEL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S++  K+ IIFCN K+ V  L + + K+GF +  +H ++ Q  R+ ++ +FK+    +
Sbjct: 240 IYSENP-KSVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKKQKFNV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V+SD+A+RG+ I D+  V N+DVP   ENYIHRIGRTGR    GKA T+V ++D K+I+
Sbjct: 299 LVSSDVASRGIHIDDISLVINYDVPQDKENYIHRIGRTGRKRNSGKAITIVTEKDEKYIE 358

Query: 359 AIEKLIEKKVDWL 371
            IE  I  K++ L
Sbjct: 359 NIETYIGYKINEL 371


>gi|332534579|ref|ZP_08410414.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035999|gb|EGI72478.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 442

 Score =  236 bits (601), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 205/368 (55%), Gaps = 7/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLG+  ++   +   G  +PT IQ   +P  L  HD+   ++TG+GKT +F+LP +
Sbjct: 1   MQFTDLGIDTRLETQLAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAV 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + K +A   R PR LI+ PTRELA QV            +    ++GG  F  Q K L
Sbjct: 61  QRVMKQKALSKRDPRVLIVAPTRELATQVFTQLRLLIAGTAIKAVKILGGENFNDQIKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-R 178
                 ++ TPGR+ DH  +  L ++ +E+L+ DEADR+LD+GF   ++ I        R
Sbjct: 121 RNDPQFVVATPGRLADHITKRSLQLSGLELLIFDEADRILDLGFTEQLKMINEQANHRLR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQ 236
           QTLLFSAT+   ++  +S N L+ PK+I ++  +     I+   ++A +  +  K ALL+
Sbjct: 181 QTLLFSATLDHAQVDALSRNLLKKPKQITLSAANEQHSDIKQTLYLADHLDH--KEALLE 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L +QD +   IIF   + +   L  +L  +GF   A+ G++ Q  R+ I+ +F     
Sbjct: 239 HFL-NQDDVGQCIIFTATRSDTSRLSEALNAKGFKSVALAGDLTQNKRLDIMDSFSRENF 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++ +D+A+RGLD+  V HV NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D   
Sbjct: 298 KILITTDVASRGLDLLSVTHVINFDLPKHAEEYVHRIGRTGRAGFKGNAISLVGPKDWAS 357

Query: 357 IDAIEKLI 364
             AI+  +
Sbjct: 358 YLAIKAFL 365


>gi|326504546|dbj|BAJ91105.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326508600|dbj|BAJ95822.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 456

 Score =  236 bits (601), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 129/367 (35%), Positives = 213/367 (58%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+  ++V A    G+ +PT IQ   IP  LQ  DV G+ QTG+GKT +F LP++  
Sbjct: 28  FAELGICRELVEACDAMGWKQPTKIQAGAIPHALQGRDVIGLGQTGSGKTGAFALPIIQA 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L + R         ++ PTRELA Q+A+ FE  G    L  ++L+GG+    Q   + + 
Sbjct: 88  LLEHRQPFF---ACVMSPTRELAIQIAEQFEALGSGIGLVCSVLVGGVDRMQQVLSIAKR 144

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++ TPGR+LDH    K   +  ++ LV+DEAD++L++ F   + +I   +P  R+T 
Sbjct: 145 PHIVVGTPGRLLDHLKDTKGFSLTKVKYLVLDEADKLLNLEFKESLDDILKEIPKERRTY 204

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT ++ K+    L+NP ++EV++  ST +T++  +    A Y K C L+  L + 
Sbjct: 205 LFSATMTKKVSKLQRACLRNPVKVEVSSKYSTVDTLKQEWYFVPADY-KDCYLVHVLNEL 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q +M   +IF    ++   L  +L   GF   +I G + Q  R+  L+ FK     +++ 
Sbjct: 264 QGSMI--MIFVRTCESTRLLALTLRNLGFKALSISGQMSQDKRLGALNKFKAKDFNILIC 321

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V  V N+D+P  +++Y+HR+GRT RAG+ G A + V + + +    IE
Sbjct: 322 TDVASRGLDIQGVDVVMNYDIPMNSKDYVHRVGRTARAGQSGYAVSFVNQYEAEWFKLIE 381

Query: 362 KLIEKKV 368
           +L+ +++
Sbjct: 382 QLLGRQI 388


>gi|289620618|emb|CBI52979.1| unnamed protein product [Sordaria macrospora]
          Length = 1190

 Score =  236 bits (601), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 213/376 (56%), Gaps = 18/376 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL+  ++  +   GY KPTPIQ++ +P+++   DV G+A+TG+GKT +F LP+L  
Sbjct: 557 WSQCGLTRPILDTIESLGYEKPTPIQMQALPVIMSGRDVIGVAKTGSGKTMAFALPLLRH 616

Query: 63  LEKGRARVRMPRT-------LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           ++      + P T       LI+ PTREL  Q+  + + + K   L V    GG   + Q
Sbjct: 617 VKD-----QDPVTGDDGAIALIMTPTRELCTQIYSDLQPFAKALKLRVVAAYGGNAIKDQ 671

Query: 116 NKKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITS 172
             +L+RGA++++ TPGR++D    N G++  +     LV+DEADRM DMGF P +  I +
Sbjct: 672 IAELKRGAEIIVATPGRLIDLLAANGGRVTNLKRATYLVLDEADRMFDMGFEPQVMKIFN 731

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSK 230
            V   RQT+LFSATM   +  +++  L++P  I V   S  A  I      +    ++++
Sbjct: 732 NVRPDRQTILFSATMPRIIDSLTKKVLRDPVEITVGGRSVVAPEITQIVEVMDEGKKFNR 791

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
              LL +L    D +++ +IF  +++   +L   L ++G+   +IHG  DQ  R   +S+
Sbjct: 792 LLELLGELYADDDDVRS-LIFVERQEKADDLLRELLRRGYGCMSIHGGKDQEDRNSTISD 850

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK+G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + 
Sbjct: 851 FKKGVCPILIATSIAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFIT 910

Query: 351 KEDIKHIDAIEKLIEK 366
           +E       I K +E+
Sbjct: 911 EEQENCASGIAKALEQ 926


>gi|141796059|gb|AAI34864.1| LOC556764 protein [Danio rerio]
          Length = 519

 Score =  236 bits (601), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 205/374 (54%), Gaps = 11/374 (2%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEK 65
           V+  +L   + +PT IQ +  PL L   D+ GIAQTG+GKT +++LP +        LE+
Sbjct: 106 VMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER 165

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
           G      P  L+L PTRELA QV      YGK+  +    + GG P   Q + LERG ++
Sbjct: 166 GDG----PICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERGVEI 221

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
            I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL++SA
Sbjct: 222 CIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 281

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           T   E+++++E+FLQ+  +I +     +A       V    +  K   L+Q + +     
Sbjct: 282 TWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAEK 341

Query: 246 KN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
           +N  IIF   KK    L   + + G+    IHG+  Q  R  +L+ F+ G   +++A+D+
Sbjct: 342 ENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDV 401

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     +++    + +++
Sbjct: 402 ASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQARDLVRVL 461

Query: 365 EKKVDWLNGDLSSL 378
           E+    +N  L  L
Sbjct: 462 EEARQAINPKLLQL 475


>gi|119471950|ref|ZP_01614235.1| ATP-dependent RNA helicase, DEAD box family protein
           [Alteromonadales bacterium TW-7]
 gi|119445208|gb|EAW26499.1| ATP-dependent RNA helicase, DEAD box family protein
           [Alteromonadales bacterium TW-7]
          Length = 440

 Score =  236 bits (601), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 134/378 (35%), Positives = 208/378 (55%), Gaps = 7/378 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLG+  ++   +   G  +PT IQ   +P  L  HD+   ++TG+GKT +F+LP +
Sbjct: 1   MHFTDLGIDTRLETQLAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAV 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + K +A   R PR LI+ PTRELA QV            +    ++GG  F  Q K L
Sbjct: 61  QRVMKQKALSKRDPRVLIVAPTRELATQVFTQLRLLIAGTAIKAVKVLGGENFNDQIKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TR 178
                 ++ TPGR+ DH  +  L ++ +E+L+ DEADR+LD+GF   ++ I        R
Sbjct: 121 RNDPQFVVATPGRLADHVTKRSLQLSGLELLIFDEADRILDLGFTEQLKLINDEANHRLR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTLLFSAT+   ++  +S N L+ PK+I ++  +     I +  ++A +  +  K ALL 
Sbjct: 181 QTLLFSATLDHAQVDALSRNLLKKPKQITLSAANEQHSDITQTLYLADHLDH--KEALLA 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L+ QD +   IIF   + +   L   L  +GF   A+ G++ Q  R+ I+ +F  G  
Sbjct: 239 HFLK-QDEVGQCIIFTATRADTSRLSEELNNKGFKSVALAGDLTQSKRLDIMDSFSRGNF 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++ +D+A+RGLD+  V HV NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D   
Sbjct: 298 KILITTDVASRGLDLLSVTHVINFDLPKHAEEYVHRIGRTGRAGFKGTAISLVGPKDWAS 357

Query: 357 IDAIEKLIEKKVDWLNGD 374
             AI+  +  ++ +   D
Sbjct: 358 YLAIKSFLNDELKFATID 375


>gi|108742054|gb|AAI17661.1| LOC556764 protein [Danio rerio]
          Length = 519

 Score =  236 bits (601), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 205/374 (54%), Gaps = 11/374 (2%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEK 65
           V+  +L   + +PT IQ +  PL L   D+ GIAQTG+GKT +++LP +        LE+
Sbjct: 106 VMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER 165

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
           G      P  L+L PTRELA QV      YGK+  +    + GG P   Q + LERG ++
Sbjct: 166 GDG----PICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERGVEI 221

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
            I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL++SA
Sbjct: 222 CIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 281

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           T   E+++++E+FLQ+  +I +     +A       V    +  K   L+Q + +     
Sbjct: 282 TWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAEK 341

Query: 246 KN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
           +N  IIF   KK    L   + + G+    IHG+  Q  R  +L+ F+ G   +++A+D+
Sbjct: 342 ENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDV 401

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     +++    + +++
Sbjct: 402 ASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQARDLVRVL 461

Query: 365 EKKVDWLNGDLSSL 378
           E+    +N  L  L
Sbjct: 462 EEARQAINPKLLQL 475


>gi|115454521|ref|NP_001050861.1| Os03g0669000 [Oryza sativa Japonica Group]
 gi|75327677|sp|Q7Y183|RH10_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 10
 gi|31126733|gb|AAP44655.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|53370642|gb|AAU89137.1| DEAD/DEAH box helicase domain containing protein [Oryza sativa
           Japonica Group]
 gi|108710302|gb|ABF98097.1| ATP-dependent RNA helicase DDX47, putative, expressed [Oryza sativa
           Japonica Group]
 gi|113549332|dbj|BAF12775.1| Os03g0669000 [Oryza sativa Japonica Group]
 gi|125545183|gb|EAY91322.1| hypothetical protein OsI_12939 [Oryza sativa Indica Group]
 gi|215695397|dbj|BAG90588.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 472

 Score =  236 bits (601), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 136/376 (36%), Positives = 216/376 (57%), Gaps = 16/376 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+ P++V A    G+ +PT IQ + IP  L+  D+ G+ QTG+GKT +F LP++  
Sbjct: 43  FAELGVVPELVAACDAMGWKEPTRIQAEAIPHALEGRDLIGLGQTGSGKTGAFALPIIQA 102

Query: 63  LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L K       P+ L   +L PTRELA Q+   FE  G    L+  +L+GG+    Q   L
Sbjct: 103 LLKQDK----PQALFACVLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVDRVQQAVSL 158

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +++ TPGR+LDH    K   +N ++ LV+DEAD++L++ F   + +I +++P  R
Sbjct: 159 AKRPHIVVGTPGRLLDHLTDTKGFSLNKLKYLVLDEADKLLNVEFQKALDDILNVIPKER 218

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +T LFSATMT+++ K+    L+NP ++EV +  ST +T+   F    A Y K C L+  L
Sbjct: 219 RTFLFSATMTNKVSKLQRACLRNPVKVEVASKYSTVDTLRQEFYFVPADY-KDCFLVHVL 277

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +   +M   +IF    ++   L  +L    F   +I G + Q  R+  L+ FK     +
Sbjct: 278 NELPGSMI--MIFVRTCESTRLLALTLRNLRFKAISISGQMSQDKRLGALNRFKTKDCNI 335

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +D+A+RGLDI  V  V N+D+P  +++Y+HR+GRT RAG  G A +LV + +     
Sbjct: 336 LICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLVNQYEAMWFK 395

Query: 359 AIEKLI-----EKKVD 369
            IEKL+     ++KVD
Sbjct: 396 MIEKLLGYEIPDRKVD 411


>gi|298706016|emb|CBJ29130.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 944

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 133/352 (37%), Positives = 202/352 (57%), Gaps = 4/352 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L +S  ++ AV   GYV PT +Q + +P  L   DVC  A TG+GKTA+F+LP+L  
Sbjct: 309 FQQLNISRPLLRAVEAMGYVTPTSVQQRAVPFALAGRDVCASATTGSGKTAAFLLPILER 368

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKLER 121
           L     +V + R +I+ PTREL  Q+        +  ++  AL++GG    +AQ  +L  
Sbjct: 369 LLYRPKKVAVTRVMIITPTRELGVQIHSMCRSLSQFTDIACALVVGGNKNLKAQEAELRA 428

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++ICTPGR++DH  N   + M+++EILV+DEADR+L++GF   +  +    P  RQT
Sbjct: 429 RPDIVICTPGRMVDHLTNSASVHMDDVEILVLDEADRLLELGFQEEVAELVKSCPIGRQT 488

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-TYAQYSKKCALLQQLL 239
           LLFSATM  ++  ++   L  P R++ +  +S  + +   FV    ++   + A+L  LL
Sbjct: 489 LLFSATMNTKVDDLASLALNKPVRVKASPMNSAPQRLVQEFVRIRQSREQDREAILLSLL 548

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  I+F + K     L   L   G     +HGN+    R++ L  FK G + ++
Sbjct: 549 TRTFKTKT-IVFFDTKILAHRLNIVLGIAGIRAAELHGNLAMTQRLEALDRFKSGDVTVL 607

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           VA+DLAARGLDI  V  V NF++P  A++YIHR+GRT RAG  G++ TL+ +
Sbjct: 608 VATDLAARGLDITGVHTVINFEMPRSADSYIHRVGRTARAGCGGRSVTLIGE 659


>gi|311739401|ref|ZP_07713236.1| ATP-dependent RNA helicase RhlE [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311305217|gb|EFQ81285.1| ATP-dependent RNA helicase RhlE [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 432

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 145/426 (34%), Positives = 220/426 (51%), Gaps = 17/426 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL  ++V  + + G  +P PIQ   IP  L   DV G   TG+GKT +F LP+L  
Sbjct: 4   FADLGLPQRLVHVLHNEGITEPFPIQKAAIPDALAGKDVLGRGPTGSGKTYTFGLPILAR 63

Query: 63  LE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   G ++   PR LIL PTRELA Q+    ++      L V  ++GG+      + L R
Sbjct: 64  LAGTGASKPAHPRALILAPTRELATQIHQRLDEPAATLGLRVLAVVGGVNINHHIRSLAR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DVL+ TPGR  D  ++GKL ++ ++I  +DEAD+M DMGF+P ++ +  L P   Q L
Sbjct: 124 PVDVLVATPGRAQDLIDQGKLHLDAVQITALDEADQMADMGFLPQVRKLLRLTPAQGQRL 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ K+ E FL +P         +  +++ H       + ++   +L+   + 
Sbjct: 184 LFSATLDGDVNKLVEQFLHDPVVHSTAPVQAAVDSMSHHLFFVGERPARNEVVLRIAARQ 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I+F   K  V      L + G +   +HG+  Q +R + +  F +G+I ++VA
Sbjct: 244 GKT----IMFMRTKHGVDRQVKKLRRAGINAYPLHGDKGQGARTRAIEGFADGSIPVLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI DV  V + D P   + Y+HR GRT R G  G   TLV  E  K +DA+ 
Sbjct: 300 TDIAARGIDIADVSLVVHVDPPAEHKAYLHRAGRTARGGAAGTVITLVMDEQRKEVDALI 359

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK-NNP--------IPQKSTGFDRRKKN 412
           K  +  V     D+S  + P     + +   ARK N P        +PQK      +K N
Sbjct: 360 K--KAGVTATEHDISHRDNPAGAPVLKEITGARKPNGPALPPPGQAVPQKPAK-SVKKSN 416

Query: 413 YSSQKS 418
           +  ++S
Sbjct: 417 FQRRRS 422


>gi|296111805|ref|YP_003622187.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154]
 gi|295833337|gb|ADG41218.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154]
          Length = 455

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 129/352 (36%), Positives = 208/352 (59%), Gaps = 15/352 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    LSP+++ A+   G+ KPTP+Q K IP +L+ +DV G +QTG+GKT +F++P+   
Sbjct: 8   FGQFNLSPEIITALTAIGFTKPTPVQAKLIPSILKGNDVVGQSQTGSGKTHTFLIPIFNQ 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKKLE 120
           LE+ +A     + +I  P+RELAAQ+    + + + +  +  ++  +GG     Q K+LE
Sbjct: 68  LEQNKA---YAQAVITTPSRELAAQITKAAKDFSEQWHQDAIISEFVGGTDKLRQIKQLE 124

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G   ++I TPGRI D    G L ++ ++  V+DEAD  LDMGF+  +  I  ++P   Q
Sbjct: 125 KGQPQIVIGTPGRIKDLVASGALKLHAVKTFVVDEADMTLDMGFLNEVDFIAGVMPANLQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSATM ++L+   + +L NP+   +   +  A+TI++  +AT ++   K  ++ Q+L
Sbjct: 185 TLVFSATMPEKLKPFLKKYLDNPQFEAIPVSTVIADTIDNWLLATKSK--DKNDVIYQVL 242

Query: 240 QSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               T+ N    ++F N K     +  +L  +G  V  IHG+I+ R R +++   +    
Sbjct: 243 ----TIGNPYLALVFANTKDRAKEIVSNLRGRGLKVAEIHGDIEPRERRRVMKAIQNLEY 298

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           Q +VA+DLAARG+DI  V HV N D+P   E ++HR+GRTGR G  G A TL
Sbjct: 299 QYVVATDLAARGIDITGVSHVINDDIPEELEFFVHRVGRTGRNGLPGLAITL 350


>gi|158287566|ref|XP_309566.4| AGAP011084-PA [Anopheles gambiae str. PEST]
 gi|157019713|gb|EAA05253.5| AGAP011084-PA [Anopheles gambiae str. PEST]
          Length = 809

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 212/363 (58%), Gaps = 4/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP +  
Sbjct: 176 FYQMDLSRPLMKAIGALGYIYPTPIQASTIPIALMGRDICGCAATGTGKTAAYMLPTIER 235

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L K      + R L+L PTREL AQV    ++  +  N+ V + IGG+  +AQ   L +
Sbjct: 236 LLYKPNVAQAVTRVLVLVPTRELGAQVYQVAKQLTQFTNVDVGIAIGGLDVKAQEAVLRK 295

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR++DH  N     +++IEIL++DEADRMLD  F   ++ I      TRQT
Sbjct: 296 NPDVVIATPGRLIDHIKNTPSFSLDSIEILILDEADRMLDEYFAEQMKEIIRSCSATRQT 355

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLL 239
           +LFSATMT+E++ ++   L+ P +I VN   + A  +   F+     + + + A+L  L+
Sbjct: 356 MLFSATMTEEVKDLAAVSLKKPVKIFVNNNQTVAFNLRQEFIRIREGREADREAILAALV 415

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + ++F   K+    L   L   G     +HG++ Q  R++ L  FK+  + ++
Sbjct: 416 -CRTFHDHCMVFVQTKRTAHRLRILLGLLGVKTGELHGDLTQAQRLESLKEFKDEQVDIL 474

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAG+ G + +L  +++ K +  
Sbjct: 475 IATDVAARGLDISTVKTVINFVMPATLEHYIHRVGRTARAGKAGVSVSLAGEQERKIVKE 534

Query: 360 IEK 362
           I K
Sbjct: 535 IVK 537


>gi|309812379|ref|ZP_07706134.1| DEAD/DEAH box helicase [Dermacoccus sp. Ellin185]
 gi|308433684|gb|EFP57561.1| DEAD/DEAH box helicase [Dermacoccus sp. Ellin185]
          Length = 522

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 133/386 (34%), Positives = 215/386 (55%), Gaps = 11/386 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+DLG+ P V+   LD  G   PTPIQ  T+P  L+  DV G  +TG+GKT +F+LP++ 
Sbjct: 4   FSDLGV-PAVLVKTLDKLGIDTPTPIQAATLPDSLKGRDVLGRGRTGSGKTFAFLLPLVA 62

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L++ R  +    PR+L+L PTRELA Q+AD+ +       L+   + GG+    Q K L
Sbjct: 63  RLDETRYEIDAYRPRSLVLAPTRELANQIADSLKPLAAAAGLSYTTVFGGVGQNPQVKAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G DVLI  PGR+ D  ++G   ++++E+ ++DEAD M DMGF+P ++ I + VP   Q
Sbjct: 123 KAGVDVLIACPGRLEDLMSQGFCDLSDVEVCILDEADHMADMGFLPGVKRILTKVPREAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT+   +  + + FL NP   + ++  S   T+EH   A       +  +L  L+
Sbjct: 183 HLLFSATLDGGIDVLVKKFLSNPVTHQADSAQSPVATMEHHVFAV--DSDSRIDVLTDLV 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       ++F   K     L   L  +G     +HGN+ Q +R++ L  F  G ++ +
Sbjct: 241 SAPGRT---VVFTRTKHGAKKLAKQLAGRGIPAVDLHGNLSQNARVRNLDAFHSGAVETL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   TL+  +    + +
Sbjct: 298 VATDIAARGIHVDDVSLVVHADPPTEHKAYLHRSGRTARAGAAGTVITLMTPDQRGDVKS 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKI 385
           + ++   K++    ++++ +P LEK+
Sbjct: 358 LLRM--AKINATTTNVTASHPLLEKL 381


>gi|289742973|gb|ADD20234.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
          Length = 616

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 130/372 (34%), Positives = 210/372 (56%), Gaps = 9/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF++      V+  +   GY  PTPIQ +  P+ +  H+  GIA+TG+GKT  ++LP + 
Sbjct: 134 DFSEAYFPDYVMKEIKRQGYKVPTPIQAQGWPIAMSGHNFVGIAKTGSGKTLGYILPAIV 193

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +  ++  +R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 194 HINNQQPLSRGEGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 253

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D    G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 254 QRGCEIVIATPGRLIDFLAAGATNLKRCTYLVLDEADRMLDMGFEPQIRKILSQIRPDRQ 313

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCAL 234
           TL++SAT   E+++++E+FL N  +I + +   +A     + IE C      + +K  +L
Sbjct: 314 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVIEIC--DENDKETKLKSL 371

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L Q+  + +     IIF   K+ V +L   +   G    AIHG+  Q  R  +L  F+ G
Sbjct: 372 LSQIYDTGENPGKIIIFVETKRRVDHLVRYIRSFGVRCGAIHGDKSQSERDFVLREFRSG 431

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G ++    + + 
Sbjct: 432 KSNILVATDVAARGLDVDGIKYVINFDYPQSSEDYIHRIGRTGRSNTKGTSYAFFTRNNA 491

Query: 355 KHIDAIEKLIEK 366
           K   A+ +++++
Sbjct: 492 KQSKALLEVLKE 503


>gi|322788219|gb|EFZ14001.1| hypothetical protein SINV_14366 [Solenopsis invicta]
          Length = 423

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 211/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++GL  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L  
Sbjct: 52  FDNMGLRDELLRGIYAYGFEKPSAIQQRSIKPIMKGRDVIAQAQSGTGKTATFSIAILQS 111

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 112 LD---TQVRETQVLVLSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYG 168

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DE+D ML+ GF   I ++   +P   Q +L
Sbjct: 169 QHVVSGTPGRVFDMIKRRVLRTRAIKMLVLDESDEMLNKGFKEQIYDVYRYLPPATQVVL 228

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 229 VSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 287

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+VC++HG++ Q+ R  I+  F+ G  +++
Sbjct: 288 ----TITQAVIFCNTKRKVDWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRSGQSRVL 343

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G +   V  +DI+ +  
Sbjct: 344 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVSINFVKTDDIRILRD 403

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 404 IEQYYSTQIDEMPMNVADL 422


>gi|89075608|ref|ZP_01162009.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89048615|gb|EAR54188.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 446

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 208/373 (55%), Gaps = 5/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL P+++  +    + + T IQ   IP+ +   D+   ++TG+GKT +F+LP +
Sbjct: 1   MHFKDLGLDPRLLKKINHLAFDRATEIQQTAIPVAIAGKDILASSKTGSGKTLAFLLPAM 60

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + + +   R  PR LIL PTRELA QV                L++GG  F  Q K L
Sbjct: 61  QRMYRSKPFTRRDPRVLILTPTRELAKQVFAQLRTLNAGTPYDGTLIVGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
                 ++ TPGR+ DH       ++ +E+L++DEADR+LD+GF   ++ I       R 
Sbjct: 121 RNDPMFVVATPGRLADHLEHRSTHLDGLEMLILDEADRILDLGFEAQLRRINEAANHRRR 180

Query: 179 QTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+   ++ +++   L NPKRI +   +   + I   F+        K ALL +
Sbjct: 181 QTLMFSATLDHSDVVEIASEMLDNPKRISIGHSAEEHKDITQRFILC-DHLDHKQALLDK 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L++QD  K  IIF   + +   L   L ++     A+ G+++Q  R  I+S F+    +
Sbjct: 240 ILETQD-YKQVIIFTATRADTDRLTAELNERKLKAVALSGSLNQNQRNSIMSQFERTCHK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLDI +V  V NFD+P  AE Y+HR+GRTGRAG  G A +LV  +D K  
Sbjct: 299 ILVTTDIASRGLDIDNVSLVINFDMPKHAEEYVHRVGRTGRAGNKGDAVSLVGPKDWKSF 358

Query: 358 DAIEKLIEKKVDW 370
           + +E  +++K+++
Sbjct: 359 NNVEAFLKQKIEF 371


>gi|84385387|ref|ZP_00988419.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
           12B01]
 gi|84379984|gb|EAP96835.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
           12B01]
          Length = 443

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 133/388 (34%), Positives = 208/388 (53%), Gaps = 10/388 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + K T IQ K IP+ +   D+   ++TG+GKT +FVLPM+
Sbjct: 1   MHFKDLGLDNRLLKNLKHYDFKKATEIQSKAIPVAIAGKDLLASSKTGSGKTLAFVLPMI 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   + PR +IL PTRELA QV           +    L++GG  F  Q K L
Sbjct: 61  HKALKTKAFSAKDPRGVILAPTRELAKQVYGELRSMLGGLSYEATLILGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            +    ++ TPGR+ DH     L ++ +E L++DEADRMLD+GF P ++ I +     R 
Sbjct: 121 RKYPRFIVATPGRLADHLEHRSLFLDGVETLILDEADRMLDLGFAPELRRIANAAKHRRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+   E+  ++   L  PKRI V   +     I   F         K A+L +
Sbjct: 181 QTLMFSATLDHAEVNGIANEMLDAPKRISVGVSNEQHLDITQKFYLC-DHLDHKEAILDR 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++  +  +  +IF   + +   L   L ++     A+ GN++Q  R  I+S F+    +
Sbjct: 240 VIEEAE-YRQVMIFTATRADTDRLTDKLNEKKLKAVALSGNLNQTQRNAIMSQFERAVYK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RG+DIP+V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D    
Sbjct: 299 ILVTTDVASRGIDIPNVSHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSF 358

Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNP 380
             +E  +++ + +     L G    + P
Sbjct: 359 KRVELYLQQDLTFSVLEGLKGKFKGIKP 386


>gi|254975780|ref|ZP_05272252.1| ATP-dependent RNA helicase [Clostridium difficile QCD-66c26]
 gi|255650694|ref|ZP_05397596.1| ATP-dependent RNA helicase [Clostridium difficile QCD-37x79]
 gi|260687441|ref|YP_003218575.1| ATP-dependent RNA helicase [Clostridium difficile R20291]
 gi|260213458|emb|CBE05139.1| ATP-dependent RNA helicase [Clostridium difficile R20291]
          Length = 497

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 217/371 (58%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L+ K++ ++   GY  P+ +Q + IP +L+  ++   ++TG+GKT SF +P+   
Sbjct: 5   FEKFKLNEKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTVSFAIPLC-- 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E         + LI+ PTRELA QV D     G+   +  + + G    + Q  +L++ 
Sbjct: 63  -ENINVDCNNIQALIVVPTRELALQVKDEISDIGRLKKVRCSAIFGKQSIKDQIAELKQR 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRILDH N+G + + N++ LVIDEAD+M + GF+  ++ I   +P  +   L
Sbjct: 122 VHIVVATPGRILDHINKGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVSL 181

Query: 183 FSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           FSAT+ +E++ + E ++ +     IE N   +  +T +       A   +K  LL++L+ 
Sbjct: 182 FSATIDEEIKYICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYILLKELIY 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++  K+ IIFCN K+ V  L + + K+GF +  +H ++ Q  R+ ++ +FK     ++V
Sbjct: 242 SENP-KSVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQKFNILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +SD+A+RG+ I D+  V N+DVP   ENYIHRIGRTGR G  GKA T+V ++D K+I+ I
Sbjct: 301 SSDVASRGIHIDDISLVINYDVPQDKENYIHRIGRTGRKGNSGKAITIVTEKDEKYIENI 360

Query: 361 EKLIEKKVDWL 371
           E  I  KV+ L
Sbjct: 361 ETYIGYKVNEL 371


>gi|330976959|gb|EGH76980.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 459

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 136/377 (36%), Positives = 221/377 (58%), Gaps = 8/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++  N+ V  L GG+ F  Q   LE 
Sbjct: 66  INP---RFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F+++P+ ++V    + ++ IE  F     +   + A+++ L   
Sbjct: 183 LFSATYPVGIKQLSSKFMRDPQIVKVEALHADSQ-IEQIFYEISPEQRLE-AVVKVLGHF 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T  + + FC  K+ V  +   L  +G S   +HG++DQR R ++L+ F   +  ++VA
Sbjct: 241 RPT--SCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLDQRDRDQVLAMFANRSTSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 299 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 358

Query: 362 KLIEKKVDWLNGDLSSL 378
           +L +  ++W   D  S+
Sbjct: 359 ELQKAPLNWQQYDRLSI 375


>gi|241958758|ref|XP_002422098.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223645443|emb|CAX40099.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 440

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 154/428 (35%), Positives = 240/428 (56%), Gaps = 29/428 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYV-KPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M F DLG++ + +   LDA  +  PT IQ   IP +L+ HD  G A+TG+GKT +F  PM
Sbjct: 1   MSFNDLGVA-RWLSESLDAMKIYTPTSIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPM 59

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           LT   +    +     LIL PTRELA Q+A+ F   G N N+ VA+++GG  F  Q   L
Sbjct: 60  LTRWSEDPFGIF---GLILTPTRELALQIAEQFAALGANMNIKVAVVVGGEDFVQQTLAL 116

Query: 120 ERGADVLICTPGRILDH-FNRGKLLMNN---IEILVIDEADRMLDMGFIPYIQNITSLVP 175
           +R    +I TPGR+ DH  N G+  ++    ++ LV+DEADR+L   F   +Q    ++P
Sbjct: 117 QRKPHFVIATPGRLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFDVLP 176

Query: 176 FT--RQTLLFSATMTDELQKVSEN---------FLQNPKRIE-VNTPSSTAETIEHCFVA 223
            +  RQTLLF+AT+TD ++ + E          F+   + ++ V  PS+    I + FV 
Sbjct: 177 PSDKRQTLLFTATITDAVRALKEKPPTPGKPPVFMHEVETVDKVAIPSTL--QISYVFVP 234

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
           +Y + +   ++L  L Q +D+    +IF N+      L   L K  F V ++H  + Q  
Sbjct: 235 SYVKEAYLNSILH-LEQFKDS--TAVIFVNRTTTAEVLRRMLRKLDFRVASLHSEMPQSE 291

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L  FK G  ++++A+D+A+RGLDIP V  V NFD+P   +++IHR+GRT RAGR G
Sbjct: 292 RTNSLHRFKAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKG 351

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
            A +++ ++DI  I +IE+ I KK++ L  D++  N  + K  ++  + A++ + +    
Sbjct: 352 DAVSIIGEKDIDRIQSIEERINKKMELLE-DVNDDN--VIKESLSATSVAKRESLMEMDK 408

Query: 404 TGFDRRKK 411
             F  RKK
Sbjct: 409 ENFGERKK 416


>gi|292488330|ref|YP_003531212.1| ATP-dependent RNA helicase dbpA [Erwinia amylovora CFBP1430]
 gi|292899529|ref|YP_003538898.1| ATP-independent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291199377|emb|CBJ46494.1| ATP-independent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291553759|emb|CBA20804.1| ATP-dependent RNA helicase dbpA [Erwinia amylovora CFBP1430]
          Length = 459

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 137/360 (38%), Positives = 210/360 (58%), Gaps = 10/360 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY+  TP+Q +++P +L   DV   A+TG+GKTA+F    L ++ +  A   + + L+L 
Sbjct: 22  GYLAMTPVQAESLPAILAGRDVRAQAKTGSGKTAAF---GLGVMHRVDASQYVTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QV     +  +   N+ +  L GG P  AQ   L     +++ TPGRILDH  
Sbjct: 79  PTRELADQVTKELRRLARFTSNIKILTLCGGQPVGAQRDSLLHAPHIVVGTPGRILDHLQ 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           R  L ++ I  LV+DEADRML+MGF   I  I S  P TRQTLLFSAT    + ++S++ 
Sbjct: 139 RETLKLDAINTLVLDEADRMLEMGFREDIDAIISHSPQTRQTLLFSATWPQAIAQISQSI 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            +NP  IE    S     IE  F    A   K  AL+  L + Q +  + ++FCN K+  
Sbjct: 199 QRNPLTIETGDVSDL-PAIEQTFYEA-ASREKLTALIGLLSERQPS--SCVVFCNTKREC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            ++ ++L+K   S   +HG+++QR R ++L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 DDIAYALDKAQISAQPLHGDLEQRERDQMLIRFANGSCRVLVATDVAARGLDIKALPMVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           N+ +    E ++HRIGRT RAG+ G A + V+ +++    A+E  +++K+ W N  LS+L
Sbjct: 315 NYQLSFDPEVHVHRIGRTARAGQEGCAVSFVSPDEMIRAHALEDYLQQKLVWCN--LSAL 372


>gi|115683622|ref|XP_784902.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Strongylocentrotus purpuratus]
 gi|115971375|ref|XP_001190564.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Strongylocentrotus purpuratus]
          Length = 869

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 145/451 (32%), Positives = 239/451 (52%), Gaps = 22/451 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S +V+  +    Y KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 414 WVQCGVSMRVLTILKKNNYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTMAFLLPMFRH 473

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++        P TLI+ PTRELA Q+    +K+ K+  L    + GG     Q  +L+
Sbjct: 474 IMDQDPLEAEDGPITLIMTPTRELAMQIFKECKKFTKSMGLRAVCVYGGTGISEQIAELK 533

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +     LV+DEADRM DMGF P +  I   +   
Sbjct: 534 RGAEIIVCTPGRMIDMLGANNGRVTNLRRCTYLVLDEADRMFDMGFEPQVMKIVENIRPD 593

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST-AETIEHCFVATYAQYSKKCALLQ 236
           RQT+LFSAT   +++ ++   L  P  ++V   S   ++  +H  +    Q   K   L 
Sbjct: 594 RQTVLFSATFPRQMEALARKILTKPIEVQVGGRSVVCSDVTQHAMILEEDQ---KFLKLL 650

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL   D  +  ++F  ++++   L   L K  +   A+HG IDQ  R  I+ +FK   +
Sbjct: 651 ELLGYYDEGQI-LVFVEKQESADLLLKDLMKASYPCLALHGGIDQYDRDSIIQDFKAANV 709

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+ +AARGLD+ ++  V N+D PN  E+Y+HR+GRTGRAG  G ++T +  E  K+
Sbjct: 710 KILVATSVAARGLDVKNLVLVINYDCPNHYEDYVHRVGRTGRAGNKGFSYTFLMPEQAKY 769

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ--HNHARKNNPIPQKSTGFDRRKKNYS 414
              + K  E         LS    P E  ++     N  +       K++GF  +   + 
Sbjct: 770 AGDVIKAFE---------LSGAKVPEELTEMWSLYCNQQKSEGKEVTKNSGFSGKGFKFD 820

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGF 445
             +  +   E +K+ +    +Q++D +  G 
Sbjct: 821 DTEREL-ANEKKKLQRAALGLQDSDDEDAGM 850


>gi|264679533|ref|YP_003279440.1| hypothetical protein CtCNB1_3398 [Comamonas testosteroni CNB-2]
 gi|262210046|gb|ACY34144.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 431

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 146/419 (34%), Positives = 218/419 (52%), Gaps = 28/419 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL  +++ A LD G    TPIQ + IP VL   D+   A TG+GKT +++LP+L
Sbjct: 1   MSFAPLGLRAELLDATLDLGLRDATPIQTEAIPAVLAGRDLWACAPTGSGKTMAYLLPLL 60

Query: 61  -TILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEA 114
              L + R+    VR   TLIL PTRELA QV ++     +         ++ GG+    
Sbjct: 61  QAWLAQKRSHTGFVRPLATLILVPTRELALQVHESLSDITRQLREQPRSRVVYGGVSINP 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  +L   AD L+ TPGR+LD      + +N ++ LV+DEADR+LD GF   +  + +L+
Sbjct: 121 QMMQLRGSADFLVATPGRLLDLVEHNAVRLNAVQHLVLDEADRLLDQGFAEELNRVLALL 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP-----SSTAETIEHCFVATYAQYS 229
           P  RQTLLFSAT    ++ ++   L +P R++V+       S++ E I    +A      
Sbjct: 181 PGKRQTLLFSATFPQNVEALATRLLHDPVRVQVDADQAAEHSASPENISQRAIAVDG--P 238

Query: 230 KKCALLQQLL---QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           ++  LL+ L+   ++Q   +  ++F  ++     L   L K G      HG++ Q +R  
Sbjct: 239 RRTQLLRHLVKQGENQPEWERALVFVAKRHTAEMLADKLYKAGIYATTFHGDMSQGARKD 298

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
           +L  FK    QL++ +DLAARG+DI  +  V N+D+P    +YIHRIGRTGRAG  G A 
Sbjct: 299 VLDQFKAKRWQLLITTDLAARGIDIAQLPTVINYDLPRSPADYIHRIGRTGRAGHAGCAI 358

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           T V+  D  H   I K  + ++D            LE+I   +   A    P+ Q   G
Sbjct: 359 TFVSPADTAHWKLICKRNQLEID------------LEQIQGFEPTEAVPPPPVAQDGNG 405


>gi|194440585|dbj|BAG65665.1| vasa [Gryllus bimaculatus]
          Length = 650

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 130/360 (36%), Positives = 205/360 (56%), Gaps = 13/360 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + GL   V+  +  +GY KPTPIQ   IP+++   D+   AQTG+GKTA+F+LP++ +
Sbjct: 216 FENSGLRQFVLDNIKKSGYAKPTPIQKHAIPIIMSGRDLMACAQTGSGKTAAFLLPIINV 275

Query: 63  LEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           L          A    P  +I+ PTREL  Q+     K+     +   +  GG     Q 
Sbjct: 276 LLSDPRDLILTAEHCEPHAIIVSPTRELTLQIYSEARKFAHGSIIKAVVTYGGTAAYHQA 335

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ---NITSL 173
           +++ +G  +L+ TPGR+LD  NRG++   ++  +V+DEADRMLDMGF+P I+   N  ++
Sbjct: 336 QQVMKGCHILVATPGRLLDFVNRGRISFASVRFVVLDEADRMLDMGFMPDIEKMMNHPTM 395

Query: 174 VPF-TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           VP   RQTL+ SAT  +E+Q+++  FL +   + V         ++  F     ++ K+ 
Sbjct: 396 VPTGERQTLMSSATFPEEIQRLAGKFLSDYLFVAVGIVGGACTDVDQKFYQV-TRFEKRP 454

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L++ LL+ +   K  ++F   K+    +   L +Q F   +IHG+  QR R + L++FK
Sbjct: 455 KLVE-LLKEEGGDKT-LVFVEMKRTADFIAAYLSEQNFPTTSIHGDRMQREREEALADFK 512

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G + ++VA+ +AARGLDI +V HV N+D+P   + Y+HRIGRTGR G  GKA +    E
Sbjct: 513 SGQMTILVATAVAARGLDIKNVAHVVNYDLPKSIDEYVHRIGRTGRVGNRGKATSFYDPE 572


>gi|270262252|ref|ZP_06190524.1| hypothetical protein SOD_b04600 [Serratia odorifera 4Rx13]
 gi|270044128|gb|EFA17220.1| hypothetical protein SOD_b04600 [Serratia odorifera 4Rx13]
          Length = 460

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 218/371 (58%), Gaps = 8/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ L L  + +  + + GY + TP+Q   +P +L+  DV   A+TG+GKTA+F    +
Sbjct: 4   VSFSSLPLPAEQLANLNELGYAEMTPVQAAALPAILKGQDVRAKAKTGSGKTAAF---GI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
            +L+K        + LIL PTRELA QV+    +  +   N+ +  L GG P   Q   L
Sbjct: 61  GLLDKINVSQVAAQALILCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGPQLDSL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +++ TPGRI +H  +  L+++ +++LV+DEADRMLDMGF   I ++ S  P  RQ
Sbjct: 121 VHAPHIVVGTPGRIQEHLRKKTLVLDELKVLVLDEADRMLDMGFADDIDDVISYTPPQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    ++++S    ++P  +EV+       +IE  F  T  +  +   L+  + 
Sbjct: 181 TLLFSATYPSGIERISARVQRDPLNVEVDD-GDDQTSIEQRFYET-TRDQRPAVLVSAIR 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q +  + ++FCN K++  ++  +LE +G SV A+HG+++QR R ++L  F   + +++
Sbjct: 239 HYQPS--SCVVFCNTKRDCQSVYEALEARGISVSALHGDLEQRDRDQVLVRFANRSCRVL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++  V N+++    E ++HRIGRTGRAG +G A +L   ++++   A
Sbjct: 297 VATDVAARGLDIKELELVVNYELAFDPEVHVHRIGRTGRAGLNGLAISLCTPQEMERAHA 356

Query: 360 IEKLIEKKVDW 370
           IE+   K V+W
Sbjct: 357 IEEYQRKAVNW 367


>gi|260798638|ref|XP_002594307.1| hypothetical protein BRAFLDRAFT_275600 [Branchiostoma floridae]
 gi|229279540|gb|EEN50318.1| hypothetical protein BRAFLDRAFT_275600 [Branchiostoma floridae]
          Length = 563

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 132/358 (36%), Positives = 206/358 (57%), Gaps = 4/358 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           + LS  +V A+    +  PTPIQ  TIP+ L   DVC  A TGTGKTA+F+LP+L  L  
Sbjct: 1   MNLSRPLVKAISQMKFHHPTPIQKATIPVALLGKDVCACAATGTGKTAAFMLPVLERLLY 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
              +  + R L+L PTRELA QV     +  +  ++ ++L  GG+    Q   L  G DV
Sbjct: 61  KPRQAPVTRVLVLAPTRELAVQVHQVSRQLAQFTSVEISLAAGGLDIRTQEAALRLGPDV 120

Query: 126 LICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +I TPGR++DH  N     + +IE+L++DEADRMLD  F   +  I  L    RQT+LFS
Sbjct: 121 VIATPGRLIDHLHNTPSFDLKSIEVLILDEADRMLDEFFEEQMNEIIRLCARKRQTMLFS 180

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           ATM+D+++ ++   L+NP ++ VN  +  A  +   F+        +    + ++ ++  
Sbjct: 181 ATMSDQVKDLAAVSLENPVKLFVNENTDVAFNLRQEFIRIRPN---REGDREAIIAARTF 237

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             + I+F   K     +   L   G +V  +HGN+ Q  R++ L  FK+  + +++A+DL
Sbjct: 238 HDHCIVFIQTKLQAHRMHIILGLLGLNVGELHGNLSQTQRLETLKRFKDAEVDVLLATDL 297

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           AARGLDI  V  V NF +P+  ++YIHR+GRT RAG+ G+A TLV +++ +++  + K
Sbjct: 298 AARGLDIQGVKTVINFTMPSTLKHYIHRVGRTARAGKSGRAVTLVGEKERRYLKDVVK 355


>gi|71281141|ref|YP_268282.1| ATP-dependent RNA helicase DbpA [Colwellia psychrerythraea 34H]
 gi|71146881|gb|AAZ27354.1| ATP-dependent RNA helicase DbpA [Colwellia psychrerythraea 34H]
          Length = 468

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 140/347 (40%), Positives = 213/347 (61%), Gaps = 7/347 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY + TPIQ KT+P +L+  DV G A+TG+GKTA+F L +L  LE  + R++   ++++ 
Sbjct: 29  GYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALLNKLEVKKFRIQ---SMVIC 85

Query: 80  PTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    K  +  +N+ +  L GG PF  Q   LE GA V++ TPGR+ +H  
Sbjct: 86  PTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIGSLEHGAHVIVGTPGRLEEHVI 145

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +G L ++N+ +LV+DEADRML+MGF   + NI    P  RQTLLFSAT  D+++ +SE+ 
Sbjct: 146 KGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPLDRQTLLFSATFPDQIKSISESI 205

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           + +P  +++ + S    TI   F        +  AL   LL +Q  +++  IFCN KK  
Sbjct: 206 MTDPVMVKIAS-SEDQSTISQKFFKVGNDDDRLDALRLLLLGNQ--VESTAIFCNTKKET 262

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +  +L   GFSV A+HG+++QR R + L  F   +  ++VA+D+AARGLDI  +  V 
Sbjct: 263 QQVADALHFDGFSVLALHGDLEQRDRDQTLLRFANKSASILVATDVAARGLDIDSLDLVI 322

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           N+ +   +E ++HRIGRTGRAG  G A++L + ++   +  +E  +E
Sbjct: 323 NYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDKESYKVGLLEDYLE 369


>gi|294892441|ref|XP_002774065.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239879269|gb|EER05881.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 674

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 144/411 (35%), Positives = 217/411 (52%), Gaps = 35/411 (8%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML------TILEKGRARVRM 72
           AG+ KPTPIQ++  P+ L   D+ GIA+TG+GKT +F++P +        L+KG      
Sbjct: 230 AGFEKPTPIQVQGWPVALSGRDMVGIAETGSGKTLAFMIPAVIHINAQPYLQKGDG---- 285

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
           P  LIL PTRELA Q+    +++G++  +T   + GG     Q + L+ G ++ I TPGR
Sbjct: 286 PIVLILAPTRELALQIKAECDRFGRSSRITNTCVYGGTQRGPQARALQNGVEICIATPGR 345

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           ++D    G   +  +  LV+DEADRMLDMGF P ++ I S +   RQTL++SAT   E+Q
Sbjct: 346 LIDFLESGTTNLKRVTYLVMDEADRMLDMGFEPQVRKIVSQIRPDRQTLMWSATWPKEVQ 405

Query: 193 KVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG--- 248
            ++ +   + P  + V         I+  +V       K   LL  L+Q+      G   
Sbjct: 406 HLARDICNEEPVLVTVGRSGHACHNIQQ-YVEVVENNVKPERLL-ALMQAASAATGGGWT 463

Query: 249 ---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              +IFC+ K+   ++   L + G+   +IHG+  Q  R  +L+ FK G   +M+A+D+A
Sbjct: 464 AKTLIFCDTKRGADDITRLLRRDGWPALSIHGDKKQSERDWVLNQFKTGRSAIMIATDVA 523

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLD+ DV +V N+D P   E+Y+HRIGRTGRAG  G A++  + +         KL  
Sbjct: 524 SRGLDVKDVKYVINYDFPGTIEDYVHRIGRTGRAGASGVAYSFFSPDK-------GKLAR 576

Query: 366 KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           + V+ L     S+   LE I  A     R N      S G  R K NY  +
Sbjct: 577 QLVNCLREANQSVPEALETIAFAND---RSN------SGGKGRGKGNYGGK 618


>gi|333025550|ref|ZP_08453614.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
 gi|332745402|gb|EGJ75843.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
          Length = 734

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 126/346 (36%), Positives = 189/346 (54%), Gaps = 5/346 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL   +V  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP+L  
Sbjct: 53  FAELGLPENIVRKLTQNGVTSPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLAS 112

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G    + PR +IL PTRELA QVAD  + YG   +L + ++ GG     Q   LERG
Sbjct: 113 LAGGFTDKKKPRGIILTPTRELAMQVADALQPYGDVLDLRMKVVCGGTSMSNQIYALERG 172

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+ D  NRG   +  + I ++DEAD+M D+GF+P +  +   VP   Q +L
Sbjct: 173 VDILVATPGRLRDLINRGACSLEKVRIAILDEADQMADLGFMPEVTELLDQVPAGGQRML 232

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ +E+  + + +L +P   EV+       T+ H  +       +  A +   + S+
Sbjct: 233 FSATLENEIDALVKRYLVDPVAHEVDAAQGAVTTMSHHILIV---KPRDKAPVTAAIASR 289

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L   G    A+HG + Q +R ++L++FK+G + ++VA+
Sbjct: 290 KGRT--IIFVRTQLGADRVAEQLRDAGVKADALHGGMTQGARTRVLADFKDGYVNVLVAT 347

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L
Sbjct: 348 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSL 393


>gi|156553787|ref|XP_001602045.1| PREDICTED: similar to GH10652p [Nasonia vitripennis]
          Length = 682

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 132/384 (34%), Positives = 209/384 (54%), Gaps = 11/384 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP +  
Sbjct: 154 FEEGGFPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 213

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L++G      P  L+L PTRELA Q+      +G +  +    + GG P   Q 
Sbjct: 214 INNQPRLQRGDG----PIALVLAPTRELAQQIQQVAADFGVSSQVRNTCIFGGAPKGPQA 269

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + LERG ++ I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +  
Sbjct: 270 RDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 329

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E++ ++E FL +  +I + +    A       V    +Y K+  L++
Sbjct: 330 DRQTLMWSATWPKEVRNLAEEFLTDYIQINIGSLQLAANHNILQIVDVCEEYEKEGKLMK 389

Query: 237 QLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L + SQ+     IIF   K+ V  +  ++ + G+    IHG+  Q+ R  +L+ F+   
Sbjct: 390 LLEEISQEAENKTIIFVETKRKVDEITRAINRYGWQAIGIHGDKSQQERDYVLNQFRSSR 449

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+D+AARGLD+ DV  V N D P+ +E+Y+HRIGRTGR+ R G A+      +  
Sbjct: 450 SAILVATDVAARGLDVEDVKFVINLDYPSNSEDYVHRIGRTGRSQRTGTAYAFFTPGNAH 509

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLN 379
             + + +++E+    +N  L  L+
Sbjct: 510 KANDLIQVLEEAKQVVNPKLYELS 533


>gi|313677314|ref|YP_004055310.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312944012|gb|ADR23202.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 380

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 222/373 (59%), Gaps = 11/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVK-PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M FA   L P  +  VL    +K P PIQ + IPL +   DV GIA+TG+GKT ++VLP+
Sbjct: 1   MSFASFNL-PIALSNVLSKQNIKSPFPIQQEVIPLAMDGKDVLGIAKTGSGKTLAYVLPI 59

Query: 60  LTILEK-GRARVRMPRTLILEPTRELAAQVADNFEKY---GKNYNLTVALLIGGIPFEAQ 115
           LT L     AR R P+ LIL PTREL+ QV + F+ +    +N++ T+A+  GG     Q
Sbjct: 60  LTKLNFFPEARNRQPQVLILVPTRELSQQVLEVFKLFVDTNRNHSKTMAVF-GGTSVNPQ 118

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + +     +L+ TPGR+LD  +   L ++++++LVIDEAD++L+  F   +  I  ++P
Sbjct: 119 MQGMGE-VKILVATPGRLLDLVSSNALKLSSLQLLVIDEADKILNANFKKELDEILKIIP 177

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            T Q LLFSAT++ ++QK+ + +L  P  I +       E I+    A  A  ++K  LL
Sbjct: 178 GTAQKLLFSATLSPDVQKLKQLYLNKPSIIHIEQKEEKVELIKQSAYAVEA--NQKGPLL 235

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + L++S+D +K  ++F +   +   +   L K G    A+H    Q +R + LS+F++G 
Sbjct: 236 RYLIKSKD-LKQVMVFTSSITSANKVADKLRKNGIDALAVHSKKSQHARNQALSDFRDGK 294

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++V +DL +RG+DI  +  V N+++P   ++++HRIGRTGRA   G+A +L++KE+  
Sbjct: 295 VNVLVTTDLLSRGIDIEYLPFVINYELPRSPKDFVHRIGRTGRAKHAGEAISLISKEESH 354

Query: 356 HIDAIEKLIEKKV 368
           H + I+K I  K+
Sbjct: 355 HFEVIQKKINYKI 367


>gi|268573988|ref|XP_002641971.1| Hypothetical protein CBG16678 [Caenorhabditis briggsae]
          Length = 972

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 137/361 (37%), Positives = 203/361 (56%), Gaps = 18/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA  GL+ K++  +    Y KPT IQ + IP ++   DV GIA+TG+GKT +F+LPM   
Sbjct: 309 FAQCGLNLKMMNVLKKLDYSKPTSIQAQAIPAIMSGRDVIGIAKTGSGKTLAFLLPMFRH 368

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +IL PTRELA Q      K+ K   L VA   GG+    Q 
Sbjct: 369 ILDQPELEEGDG----PIAVILAPTRELAMQTYKEANKFAKVLGLRVACTYGGVGISEQI 424

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
             L+RGA++++CTPGR++D    N GK+  +  +  LV+DEADRM D GF P I  + + 
Sbjct: 425 ADLKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNN 484

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST-AETIEHCFVATYAQYSKKC 232
           +   +QT+LFSAT    ++ ++   L  P  I V   S   ++  ++  +    Q   K 
Sbjct: 485 IRPDKQTVLFSATFPRHMEALARKVLDKPVEILVGGKSVVCSDVTQNAVICEEHQKLLKL 544

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF-SVCAIHGNIDQRSRMKILSNF 291
             L  +   Q      I+F ++++   ++   L K G+ SV  +HG IDQ  R   +++F
Sbjct: 545 LELLGMYYEQGC---SIVFVDKQEKADDIVDQLMKTGYNSVAPLHGGIDQHDRDSSIADF 601

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G I+++VA+ +AARGLD+ ++  V N+D PN  E+Y+HR+GRTGRAGR G A+T V  
Sbjct: 602 KTGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLP 661

Query: 352 E 352
           E
Sbjct: 662 E 662


>gi|147770303|emb|CAN60235.1| hypothetical protein VITISV_028850 [Vitis vinifera]
          Length = 666

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 222/376 (59%), Gaps = 10/376 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++ + LG++ ++V A+ + G  K  PIQ   +   +Q  D+ G A+TGTGKT +F +P++
Sbjct: 115 LEISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIM 174

Query: 61  TILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             + +  A   R R P  L+L PTRELA QV   F +   N  L    + GG P   Q  
Sbjct: 175 DKVIQYNAKHGRGRNPLALVLAPTRELARQVEKEFXESAPN--LDTLCVYGGTPISRQMN 232

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G DV++ TPGRI+D   RG L ++ ++ +V+DEAD+ML +GF   ++ I   +P  
Sbjct: 233 SLDYGVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQN 292

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALL 235
           RQ+++FSATM   ++K+++ +L+NP  I++  ++    AE I    +A+  +  +K +++
Sbjct: 293 RQSMMFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIAS--EMYEKASIV 350

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+         I+F   K++   L +++ +  F   A+HG+I Q  R + LS F++G 
Sbjct: 351 GPLITEHAKGGKCIVFTQTKRDADRLAYAMARN-FRCEALHGDISQSQRERTLSGFRDGH 409

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+D+AARGLDIP+V  + ++++PN +E ++HR GRTGRAG+ G A  + A++  +
Sbjct: 410 FNVLVATDVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQAR 469

Query: 356 HIDAIEKLIEKKVDWL 371
            +  IE+ I  K   L
Sbjct: 470 TVRFIERDIGCKFSEL 485


>gi|326796106|ref|YP_004313926.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326546870|gb|ADZ92090.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 460

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 146/414 (35%), Positives = 223/414 (53%), Gaps = 17/414 (4%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           L L  ++   + D G+   TP+Q + +P +L+  D+   AQTG+GKT +F + +L  +  
Sbjct: 10  LALPSELTKLLGDMGFKGFTPVQEQCLPDILEGKDLLAQAQTGSGKTLAFAIGLLLRIN- 68

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLERGAD 124
              R    + LI+ PTRELA QVA    +  +  N + V  L GG+PF  Q   LE GA 
Sbjct: 69  --PRYFSTQALIMCPTRELADQVAKEIRRVARFMNNIKVLTLCGGMPFGPQIGSLEHGAH 126

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGR+L+H  +  L +  +  LV+DEADRMLDMGF+  I+ +    P TRQTLLFS
Sbjct: 127 IVVGTPGRLLEHLRKRTLSLQYLNTLVLDEADRMLDMGFVDSIREVVLETPSTRQTLLFS 186

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT  D ++++S  F  NP +I++         I+  F  T     +K    + LL S   
Sbjct: 187 ATYGDNIEEISNEFQNNPSQIQIEVNQDLKPDIKQFFART-----EKAQKYETLLDSLAY 241

Query: 245 M--KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+FCN K +   +   L +Q  S  AIHG+++Q+ R ++L  F   +  +MVA+
Sbjct: 242 FGPRQAIVFCNTKADTQAVADFLNEQSVSTVAIHGDLEQKQRDQVLVRFANKSACIMVAT 301

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDAIE 361
           D+AARG+D+ ++  V NFD     + + HRIGRTGRAG  G+A + +  K+D K    IE
Sbjct: 302 DVAARGIDVKEIDLVINFDTTRDIDVHTHRIGRTGRAGHSGQALSFITDKDDYKLKGIIE 361

Query: 362 K--LIEKKVDWLNGDLS-SLNPPLEKI--DIAQHNHARKNNPIPQKSTGFDRRK 410
           +  +  + +D     LS SL P +  I  D  + N  R  + +   + G    K
Sbjct: 362 RFDITPEFIDLPETPLSYSLTPEMATIAFDAGRKNKLRPGDILGALTAGIGLEK 415


>gi|158284342|ref|XP_306246.4| Anopheles gambiae str. PEST AGAP012523-PA [Anopheles gambiae str.
           PEST]
 gi|157021090|gb|EAA02455.4| AGAP012523-PA [Anopheles gambiae str. PEST]
          Length = 720

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 128/355 (36%), Positives = 204/355 (57%), Gaps = 7/355 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G    ++ ++  + +  PTPIQ + IP  L   D+ GIA+TG+GKTA+F+ PML  
Sbjct: 205 FAHFGFDESLMKSIRKSEFSTPTPIQAQAIPAALSGRDIIGIAKTGSGKTAAFLWPMLVH 264

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R       P  LIL PTREL+ Q+ +  +K+GK YN+++    GG     Q+K LE
Sbjct: 265 IMDQRELGPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNISICCCYGGGSKWEQSKALE 324

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA++++ TPGR++D        +  +  LV+DEAD+M +MGF P +++I + +   RQT
Sbjct: 325 QGAEIVVATPGRMIDMVKIKATNLQRVTYLVLDEADKMFNMGFEPQVRSICNHIRPDRQT 384

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    ++K++ + L +P RI           +    +      SK   LL  L++
Sbjct: 385 LLFSATFKKRVEKLARDVLTDPVRIIHGDLGEANSDVTQRIILLPTVQSKWNWLLTNLVK 444

Query: 241 --SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S+ ++   +IF  +K +     ++L  +   V  +HG++DQ  R  +++ FK   + +
Sbjct: 445 MLSEGSV---LIFVTKKADAEETANNLRLKDNDVVLLHGDMDQSERNFVITRFKRKDVDI 501

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           MVA+D+AARGLDIP +  V N+D+    + + HRIGRTGRAG  G A+TL+  +D
Sbjct: 502 MVATDVAARGLDIPHIRTVVNYDIARDIDTHTHRIGRTGRAGEKGTAYTLITDKD 556


>gi|318081433|ref|ZP_07988765.1| ATP-dependent RNA helicase [Streptomyces sp. SA3_actF]
          Length = 488

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 125/346 (36%), Positives = 188/346 (54%), Gaps = 5/346 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL   +V  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP+L  
Sbjct: 53  FAELGLPENIVRKLTQNGVTSPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLAS 112

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G    + PR +IL PTRELA QVAD  + YG   +L + ++ GG     Q   LERG
Sbjct: 113 LAGGFTDKKKPRGIILTPTRELAMQVADALQPYGDVLDLRMKVVCGGTSMSNQIYALERG 172

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+ D  NRG   +  + I ++DEAD+M D+GF+P +  +   VP   Q +L
Sbjct: 173 VDILVATPGRLRDLINRGACSLEKVRIAILDEADQMADLGFMPEVTELLDQVPAGGQRML 232

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ +E+  + + +L +P   EV+       T+ H  +    +   K  +   +   +
Sbjct: 233 FSATLENEIDALVKRYLVDPIAHEVDAAQGAVTTMSHHIL--IVKPRDKAPVTAAIASRK 290

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L   G    A+HG + Q +R ++L++FK+G + ++VA+
Sbjct: 291 GRT---IIFVRTQLGADRVAEQLRDAGVKADALHGGMTQGARTRVLADFKDGYVNVLVAT 347

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L
Sbjct: 348 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSL 393


>gi|158300606|ref|XP_320481.4| AGAP012045-PA [Anopheles gambiae str. PEST]
 gi|157013241|gb|EAA00456.4| AGAP012045-PA [Anopheles gambiae str. PEST]
          Length = 910

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 135/371 (36%), Positives = 208/371 (56%), Gaps = 6/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +      V+  +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP L 
Sbjct: 226 NFEEGNFPEYVMTEIKKQGFPRPTAIQSQGWPIALSGRDMVGIAQTGSGKTLAYMLPGLV 285

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNK 117
            +  +K  +R   P  L+L PTRELA Q+      +G +   N+    + GG     Q +
Sbjct: 286 HISHQKPLSRGEGPIVLVLAPTRELAQQIQTVVRDFGNHSKPNIRYTCVFGGALKGPQVR 345

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LERG +V+I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   
Sbjct: 346 DLERGVEVVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPD 405

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ--YSKKCALL 235
           RQ L++SAT   E+Q ++E+FL++  +I + + S  A    H  V    +     K   L
Sbjct: 406 RQVLMWSATWPKEVQTLAEDFLRDYIQINIGSLSLAANHNIHQIVDVCEENEKEGKLLKL 465

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            + + + D     IIF   KK V +L  ++ + G+   +IHG+  Q  R  +L +F+ G 
Sbjct: 466 LKEIATSDATNKIIIFVETKKKVDDLLKNIVRDGYGATSIHGDKSQTERDYVLQDFRHGK 525

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+D+AARGLD+ DV +V NFD PN +E+YIHRIGRTGR  ++G A+T     + +
Sbjct: 526 STILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCSQYGTAYTFFTPNNGR 585

Query: 356 HIDAIEKLIEK 366
               +  ++E+
Sbjct: 586 QARELLSVLEE 596


>gi|256860908|gb|ACV32356.1| vasa [Scomber japonicus]
          Length = 643

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 133/359 (37%), Positives = 205/359 (57%), Gaps = 14/359 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 208 MTFDEAELCESLRKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 267

Query: 61  T-ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G A  R      P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 268 QQLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGH 327

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + +ERG +V+  TPGR+LD   RGK+ ++ +  LV+DEADRMLDMGF P ++ +    
Sbjct: 328 QIRDIERGCNVVCGTPGRLLDMIGRGKVGVSKLRYLVLDEADRMLDMGFEPDMRRLVGSP 387

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +++Q+++ +FL+     + V         +E  F+    ++S
Sbjct: 388 GMPSKEDRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQV-TKFS 446

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL  L  +   M+  ++F   K+    +   L ++     +IHG+ +QR R + L+
Sbjct: 447 KREQLLDLLKTT--GMERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALA 504

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +F+ G   +MVA+ +AARGLDIPDV HV NFD+PN  + Y+HRIGRTGR G  G+A + 
Sbjct: 505 DFRSGKCPVMVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSF 563


>gi|22126413|ref|NP_669836.1| ATP-dependent RNA helicase DbpA [Yersinia pestis KIM 10]
 gi|45441434|ref|NP_992973.1| ATP-dependent RNA helicase DbpA [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108807144|ref|YP_651060.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Antiqua]
 gi|108812508|ref|YP_648275.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Nepal516]
 gi|145598635|ref|YP_001162711.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Pestoides F]
 gi|149366275|ref|ZP_01888310.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125]
 gi|162421745|ref|YP_001606136.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Angola]
 gi|165928002|ref|ZP_02223834.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938672|ref|ZP_02227227.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010820|ref|ZP_02231718.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166210580|ref|ZP_02236615.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167402150|ref|ZP_02307625.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167420322|ref|ZP_02312075.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425805|ref|ZP_02317558.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467438|ref|ZP_02332142.1| ATP-independent RNA helicase DbpA [Yersinia pestis FV-1]
 gi|218928898|ref|YP_002346773.1| ATP-dependent RNA helicase DbpA [Yersinia pestis CO92]
 gi|229896216|ref|ZP_04511386.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|229897150|ref|ZP_04512306.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229897877|ref|ZP_04513028.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229902891|ref|ZP_04518008.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|270486675|ref|ZP_06203749.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294504053|ref|YP_003568115.1| ATP-dependent RNA helicase [Yersinia pestis Z176003]
 gi|21959402|gb|AAM86087.1|AE013856_1 ATP-dependent RNA helicase [Yersinia pestis KIM 10]
 gi|45436295|gb|AAS61850.1| ATP-dependent RNA helicase [Yersinia pestis biovar Microtus str.
           91001]
 gi|108776156|gb|ABG18675.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|108779057|gb|ABG13115.1| ATP-dependent RNA helicase [Yersinia pestis Antiqua]
 gi|115347509|emb|CAL20417.1| ATP-dependent RNA helicase [Yersinia pestis CO92]
 gi|145210331|gb|ABP39738.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides F]
 gi|149292688|gb|EDM42762.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125]
 gi|162354560|gb|ABX88508.1| ATP-independent RNA helicase DbpA [Yersinia pestis Angola]
 gi|165913286|gb|EDR31908.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920059|gb|EDR37360.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990164|gb|EDR42465.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166207760|gb|EDR52240.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166962017|gb|EDR58038.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048425|gb|EDR59833.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055204|gb|EDR65001.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229680338|gb|EEO76437.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|229688918|gb|EEO80983.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229693487|gb|EEO83536.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701139|gb|EEO89168.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|262361760|gb|ACY58481.1| ATP-dependent RNA helicase [Yersinia pestis D106004]
 gi|262366103|gb|ACY62660.1| ATP-dependent RNA helicase [Yersinia pestis D182038]
 gi|270335179|gb|EFA45956.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294354512|gb|ADE64853.1| ATP-dependent RNA helicase [Yersinia pestis Z176003]
 gi|320015493|gb|ADV99064.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 460

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 212/369 (57%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L  
Sbjct: 6   FSSLTLPAEQLSNLNELGYTEMTPVQAAVLPAILNGQDVRAKAKTGSGKTAAFGIGLLDK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           +  G     + + L+L PTRELA QV+    +  +   N+ +  L GG P   Q   L  
Sbjct: 66  IAVGEF---VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI +H  +  L+++ ++ LV+DEADRMLDMGF   I ++ +  P  RQTL
Sbjct: 123 APHIVVGTPGRIQEHLRKKTLVLDELKTLVLDEADRMLDMGFSDAIDDVIAYTPPQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S    + P  +EV   +     IE  F  T  +  K+  LL  +L S
Sbjct: 183 LFSATYPSGIEQISARVQRQPLNVEVGD-TDEEPAIEQVFFETTRE--KRLPLLISVL-S 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + ++FCN KK+  ++  SLE +G SV A+HG+++QR R ++L  F   + +++VA
Sbjct: 239 HYQPASCVVFCNTKKDCQSVYESLESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V NF++    E +IHRIGRTGRAG  G A +L   +++     IE
Sbjct: 299 TDVAARGLDIKDLELVINFELAFDPEIHIHRIGRTGRAGMSGLAVSLCTPQEMVRAHTIE 358

Query: 362 KLIEKKVDW 370
             ++ K+ W
Sbjct: 359 DYLQIKLKW 367


>gi|309358205|emb|CAP34588.2| hypothetical protein CBG_16678 [Caenorhabditis briggsae AF16]
          Length = 1000

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 137/361 (37%), Positives = 203/361 (56%), Gaps = 18/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA  GL+ K++  +    Y KPT IQ + IP ++   DV GIA+TG+GKT +F+LPM   
Sbjct: 337 FAQCGLNLKMMNVLKKLDYSKPTSIQAQAIPAIMSGRDVIGIAKTGSGKTLAFLLPMFRH 396

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +IL PTRELA Q      K+ K   L VA   GG+    Q 
Sbjct: 397 ILDQPELEEGDG----PIAVILAPTRELAMQTYKEANKFAKVLGLRVACTYGGVGISEQI 452

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
             L+RGA++++CTPGR++D    N GK+  +  +  LV+DEADRM D GF P I  + + 
Sbjct: 453 ADLKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNN 512

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST-AETIEHCFVATYAQYSKKC 232
           +   +QT+LFSAT    ++ ++   L  P  I V   S   ++  ++  +    Q   K 
Sbjct: 513 IRPDKQTVLFSATFPRHMEALARKVLDKPVEILVGGKSVVCSDVTQNAVICEEHQKLLKL 572

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF-SVCAIHGNIDQRSRMKILSNF 291
             L  +   Q      I+F ++++   ++   L K G+ SV  +HG IDQ  R   +++F
Sbjct: 573 LELLGMYYEQGC---SIVFVDKQEKADDIVDQLMKTGYNSVAPLHGGIDQHDRDSSIADF 629

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G I+++VA+ +AARGLD+ ++  V N+D PN  E+Y+HR+GRTGRAGR G A+T V  
Sbjct: 630 KTGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLP 689

Query: 352 E 352
           E
Sbjct: 690 E 690


>gi|332849248|ref|XP_511724.3| PREDICTED: eukaryotic initiation factor 4A-III [Pan troglodytes]
          Length = 411

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 208/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 40  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 100 LD---IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 157 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 217 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 275

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 276 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 331

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E  IHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 332 ISTDVWARGLDVPQVSLIINYDLPNNRELSIHRIGRSGRYGRKGVAINFVKNDDIRILRD 391

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 392 IEQYYSTQIDEMPMNVADL 410


>gi|307169387|gb|EFN62107.1| Eukaryotic initiation factor 4A-III [Camponotus floridanus]
          Length = 402

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 211/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++GL  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L  
Sbjct: 31  FDNMGLRDELLRGIYAYGFEKPSAIQQRSIKPIMKGRDVIAQAQSGTGKTATFSIAILQS 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 91  LD---TQVRETQVLVLSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYG 147

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DE+D ML+ GF   I ++   +P   Q +L
Sbjct: 148 QHVVSGTPGRVFDMIKRRVLRTRAIKMLVLDESDEMLNKGFKEQIYDVYRYLPPATQVVL 207

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 208 VSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 266

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+VC++HG++ Q+ R  I+  F+ G  +++
Sbjct: 267 ----TITQAVIFCNTKRKVDWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRSGQSRVL 322

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G +   V  +DI+ +  
Sbjct: 323 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVSINFVKTDDIRILRD 382

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 383 IEQYYSTQIDEMPMNVADL 401


>gi|302520727|ref|ZP_07273069.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
 gi|302429622|gb|EFL01438.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
          Length = 518

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 125/346 (36%), Positives = 188/346 (54%), Gaps = 5/346 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL   +V  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP+L  
Sbjct: 83  FAELGLPENIVRKLTQNGVTSPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLAS 142

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G    + PR +IL PTRELA QVAD  + YG   +L + ++ GG     Q   LERG
Sbjct: 143 LAGGFTDKKKPRGIILTPTRELAMQVADALQPYGDVLDLRMKVVCGGTSMSNQIYALERG 202

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+ D  NRG   +  + I ++DEAD+M D+GF+P +  +   VP   Q +L
Sbjct: 203 VDILVATPGRLRDLINRGACSLEKVRIAILDEADQMADLGFMPEVTELLDQVPAGGQRML 262

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ +E+  + + +L +P   EV+       T+ H  +    +   K  +   +   +
Sbjct: 263 FSATLENEIDALVKRYLVDPIAHEVDAAQGAVTTMSHHIL--IVKPRDKAPVTAAIASRK 320

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L   G    A+HG + Q +R ++L++FK+G + ++VA+
Sbjct: 321 GRT---IIFVRTQLGADRVAEQLRDAGVKADALHGGMTQGARTRVLADFKDGYVNVLVAT 377

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L
Sbjct: 378 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSL 423


>gi|302895429|ref|XP_003046595.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256727522|gb|EEU40882.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 897

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 134/397 (33%), Positives = 219/397 (55%), Gaps = 33/397 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ K+IPL+L R D+ G+A+TG+GKTA+FV+PM+  
Sbjct: 87  FQAMGLNSNLLKAITRKGFSVPTPIQRKSIPLILDRKDLVGMARTGSGKTAAFVIPMIER 146

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L    AR    R LIL P+RELA Q     +++G+  +L   LL+GG   E Q   +   
Sbjct: 147 LRAHSARFGT-RALILSPSRELAIQTLKVVKEFGRGTDLKSVLLVGGDSLEEQFGYMAAN 205

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P +RQ+LL
Sbjct: 206 PDIVIATPGRFLHLKVEMSLDLSSIQYVVFDEADRLFEMGFAAQLTEILHALPPSRQSLL 265

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL------- 235
           FSAT+   L + +   LQ+P  + ++  +  +  +E  F +      K+ +LL       
Sbjct: 266 FSATLPASLVEFARAGLQDPSLVRLDAETKVSPDLESAFFSVKGA-EKEGSLLHILHDVI 324

Query: 236 -----------QQLLQSQDTMKNG-------------IIFCNQKKNVVNLCHSLEKQGFS 271
                      +Q  +     K G             IIF   K +V  L + L + GF+
Sbjct: 325 KMPVGLPESAKEQSEKGSKKRKRGPEGGSGKPTEHSTIIFTATKHHVEYLANLLIEAGFA 384

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
           V  ++G++DQ +R   + +F+ G   ++V +D+AARG+DIP + +V NFD P + + ++H
Sbjct: 385 VSYVYGSLDQVARRMQVEDFRRGKTNILVVTDVAARGIDIPVLANVINFDFPPQPKVFVH 444

Query: 332 RIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           R+GRT RAG+ G +++LV   D  ++  ++  + KK+
Sbjct: 445 RVGRTARAGQRGWSYSLVRDTDAPYLLDLQLFLGKKL 481


>gi|290894075|ref|ZP_06557049.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J2-071]
 gi|290556419|gb|EFD89959.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J2-071]
          Length = 470

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 132/361 (36%), Positives = 204/361 (56%), Gaps = 13/361 (3%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +L LS ++  A+ + GY + TP+Q   IP+ L   D+   +QTG+GKTA+F +P   I E
Sbjct: 3   NLKLSEEIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIP---IAE 59

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           +       P+ LI+ PTRELA QV       G+   +  A + G  PF  Q  +L +   
Sbjct: 60  QVEWEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNH 119

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGR+LDH  +G L ++ +  LV+DE D ML MGFI  +++I S +P  RQ L FS
Sbjct: 120 IVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFS 179

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           ATM +E+Q + + +  +P  IE+   S     I H  +    Q   K   L+ +L +++ 
Sbjct: 180 ATMPEEMQDLIKRYQDDPMVIEM--ASEKTNPIFHVEM----QTDNKEKTLKDVLITENP 233

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             + IIFCN K  V  L   L+        IHG + Q  R + + +FK G  + ++A+D+
Sbjct: 234 -DSAIIFCNTKNQVDELTDLLD---VKANKIHGGLRQEDRFRAMDDFKSGKSRFLIATDV 289

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           A RG+D+ +V  V N+D+P   ENY+HRIGRTGRAG+ GKA + V   +   +  IE+++
Sbjct: 290 AGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEML 349

Query: 365 E 365
           +
Sbjct: 350 D 350


>gi|313609131|gb|EFR84825.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL F2-208]
          Length = 470

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 136/367 (37%), Positives = 206/367 (56%), Gaps = 17/367 (4%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +L LS ++  A+ + GY + TP+Q   IP+ L   D+   +QTG+GKTA+F +P   I E
Sbjct: 3   NLKLSEEIKRAINELGYTEATPVQKAVIPVALIGEDIVAKSQTGSGKTAAFAIP---IAE 59

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           +       P+ LI+ PTRELA QV       G+   +  A + G  PF  Q  +L +   
Sbjct: 60  QVEWEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNH 119

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGR+LDH  +G L ++ +  LV+DE D ML MGFI  +++I S +P  RQ L FS
Sbjct: 120 IVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFS 179

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           ATM +E+Q + + +  +P  IE+   S     I H  +    Q   K   L+ +L +++ 
Sbjct: 180 ATMPEEMQDLIKRYQDDPMVIEM--ASEKTNPIFHVEM----QTDNKEKTLKDVLITENP 233

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             + IIFCN K  V  L   L+        IHG + Q  R + + +FK G  + ++A+D+
Sbjct: 234 -DSAIIFCNTKNQVDELTDLLD---VKASKIHGGLRQEDRFRAMDDFKSGKSRFLIATDV 289

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL- 363
           A RG+D+ +V  V N+D+P   ENY+HRIGRTGRAG+ GKA + V   +   +  IE++ 
Sbjct: 290 AGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEML 349

Query: 364 ---IEKK 367
              IEKK
Sbjct: 350 NVTIEKK 356


>gi|119173770|ref|XP_001239279.1| DEAD/DEAH box RNA helicase [Coccidioides immitis RS]
 gi|118597491|sp|Q1DHB2|PRP5_COCIM RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
          Length = 1197

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 134/373 (35%), Positives = 211/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  + +  +   GY +PT IQ + IP ++   DV G+A+TG+GKT +F+LPM   
Sbjct: 561 WSQCGLGVQTLDVIRKLGYEQPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRH 620

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++  R    M  P  LI+ PTRELA Q+    + + K  NL      GG P + Q  +L+
Sbjct: 621 IKDQRPLENMEGPVGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELK 680

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I S +  +
Sbjct: 681 RGAEIIVCTPGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIISNIRPS 740

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT    ++ ++   L  P  I V   S  A+ I    V    + +K   LL+ 
Sbjct: 741 RQTVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAQEITQ-IVEVRPENTKFVRLLEL 799

Query: 238 L--LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L  L S D  ++   +IF ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 800 LGNLYSDDNNEDARALIFVDRQEAADGLLRDLMRKGYPCMSIHGGKDQVDRDSTIDDFKA 859

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + +E 
Sbjct: 860 GIFPVLIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQ 919

Query: 354 IKHIDAIEKLIEK 366
            ++   I K +++
Sbjct: 920 ERYSVDIAKALKQ 932


>gi|324502742|gb|ADY41204.1| ATP-dependent RNA helicase DDX46 [Ascaris suum]
          Length = 973

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 131/352 (37%), Positives = 201/352 (57%), Gaps = 7/352 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G+  K++  +    Y KPT IQ + IP ++   DV GIA+TG+GKT +F+LPM   
Sbjct: 315 WAQCGVEWKILNTLKKLEYTKPTAIQAQAIPAIMSGRDVIGIAKTGSGKTLAFLLPMFRH 374

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++     +  P  +I+ PTRELA Q      K+ K  N+ VA + GG+    Q   L+
Sbjct: 375 IMDQPELEELDGPIAVIMSPTRELAMQTWKEANKFAKPLNIRVACVYGGVGISDQIGDLK 434

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA+V++CT GR+ D    N+GK+  +  +  LV+DEADRM DMGF P +  I + +   
Sbjct: 435 RGAEVIVCTVGRLTDMLAANKGKVTNLRRVTYLVLDEADRMFDMGFEPQVMKIVNNIRPD 494

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT   +++ ++   L  P  I V   S   + +    V    ++ K   LL+ 
Sbjct: 495 RQTVLFSATFPRQMEALARKILDKPVEILVGGKSVVCDDVSQNVV-ILEEHQKMLKLLE- 552

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL       N ++F ++++    L   L + G++   +HG IDQ  R   + +FK   I+
Sbjct: 553 LLGVYWEHGNVLVFVDKQEKADELVAQLMRSGYNCAPLHGGIDQFDRDSTILDFKAAKIK 612

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           L+VA+ +AARGLD+  +  V N+D PN  E+Y+HR+GRTGRAG  G A+T +
Sbjct: 613 LLVATSVAARGLDVKKLILVVNYDCPNHYEDYVHRVGRTGRAGNKGYAYTFI 664


>gi|284036680|ref|YP_003386610.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
 gi|283815973|gb|ADB37811.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
          Length = 535

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 218/373 (58%), Gaps = 9/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   ++  V    Y+K TPIQ   IP +L   D+   AQTGTGKTA++++P+L
Sbjct: 1   MTFQEFNLHDDLLAGVDAMNYLKATPIQEMAIPKILAGKDLIASAQTGTGKTAAYLIPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             +           TLIL PTRELA Q+ +  E +G         + GG     ++ Q K
Sbjct: 61  DKIS--HTAHDHTSTLILVPTRELAKQIDEQVEGFGYFVQANSIAIYGGGKGDDWDKQRK 118

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE GAD++I TPGR++ H   G +  + I+ LV+DEAD+MLDMGF   I NI   +P  
Sbjct: 119 ALETGADIIIATPGRLIAHMQLGYVKFDKIDYLVLDEADKMLDMGFSDDIMNIVEKIPAK 178

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM +++++ S+  L +P+ I +   S  A  I+  F   +   ++K  LL  
Sbjct: 179 RQTLLFSATMPNKIREFSKKLLTDPEEIRLAV-SKPAAGIDQQFYMAFD--NQKLPLLAH 235

Query: 238 LLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L++ S   +++ ++F ++K  V ++  +L K  +    I  +++Q  R  +L +FK    
Sbjct: 236 LIKNSTKPVQSMVLFTSRKSEVNSIVRALSKLNYEARGISSDLEQDDREVVLRDFKNKAF 295

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ +RG+DI ++ HV N+D+P  AE+Y+HRIGRT RA   G A T V+ +D   
Sbjct: 296 PILVATDVLSRGIDIDNLTHVVNYDIPRDAEDYVHRIGRTARAATTGTAITFVSDQDQNR 355

Query: 357 IDAIEKLIEKKVD 369
           I +IEKLIE++VD
Sbjct: 356 IVSIEKLIEREVD 368


>gi|48136057|ref|XP_393356.1| PREDICTED: eukaryotic initiation factor 4A-III-like isoform 1 [Apis
           mellifera]
          Length = 403

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 211/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++GL  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L  
Sbjct: 32  FDNMGLRDELLRGIYAYGFEKPSAIQQRSIKPIMKGRDVIAQAQSGTGKTATFSIAILQS 91

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 92  LD---TQVRETQVLVLSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYG 148

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DE+D ML+ GF   I ++   +P   Q +L
Sbjct: 149 QHVVSGTPGRVFDMIKRRVLRTRAIKMLVLDESDEMLNKGFKEQIYDVYRYLPPATQVVL 208

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 209 VSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 267

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+VC++HG++ Q+ R  I+  F+ G  +++
Sbjct: 268 ----TITQAVIFCNTKRKVDWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRSGQSRVL 323

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G +   V  +DI+ +  
Sbjct: 324 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVSINFVKTDDIRILRD 383

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 384 IEQYYSTQIDEMPMNVADL 402


>gi|321466431|gb|EFX77426.1| hypothetical protein DAPPUDRAFT_213372 [Daphnia pulex]
          Length = 478

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 209/369 (56%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L +   ++  + + G  KPTP+QI  IP +L   D  G  +TG+GKT +F LP++  
Sbjct: 11  FNSLKIDEWLIKQIKNLGVDKPTPVQINCIPAILDGRDCIGCDRTGSGKTFAFALPIVQT 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K    +     L+L PTRELA Q+AD F+  GK  NL +++++GG+    Q  +L   
Sbjct: 71  LSKDPYGIY---ALVLTPTRELAYQIADQFQIIGKPINLRMSVIVGGMGMMDQGIELSNH 127

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             ++I TPGR+ DH    K      I+ LV+DEADR+L+  F   +Q I   +P  RQTL
Sbjct: 128 PHIVIATPGRLADHLESCKTFSFKTIKYLVMDEADRLLEGNFDEQLQIIFQALPEKRQTL 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+TD L K+ E  L  P        ++T E ++  ++   A + K   L+  +   
Sbjct: 188 LFSATITDTLNKLREVALNKPFMWSAPVETATVEELDQRYILVPADF-KDGYLVHVVQNF 246

Query: 242 QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++    G  I+F +  ++   L  +L + GF    +H  + QR R+  L+ F+  T++++
Sbjct: 247 REEKPKGSIIVFTDTCRSCQILSMTLLELGFQSLCLHSMMSQRERIATLTKFRSNTVKIL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDIP V  + N +VP+  + Y+HR+GRT RAGR G + TL+   DIK + A
Sbjct: 307 VATDVASRGLDIPTVQLIVNHNVPSNPKEYVHRVGRTARAGRGGFSLTLITPNDIKLLHA 366

Query: 360 IEKLIEKKV 368
           IE  I K++
Sbjct: 367 IEGRICKEL 375


>gi|171696192|ref|XP_001913020.1| hypothetical protein [Podospora anserina S mat+]
 gi|170948338|emb|CAP60502.1| unnamed protein product [Podospora anserina S mat+]
          Length = 715

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 129/394 (32%), Positives = 212/394 (53%), Gaps = 31/394 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  L  +++  V D GY +P+PIQ  +IP+ LQ  D+ G+A TG+GKTA+F+LP+L  
Sbjct: 283 WEESNLPRRLLDIVHDVGYDEPSPIQRASIPIALQARDLIGVAVTGSGKTAAFLLPLLVY 342

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + +        +   P  LIL PTREL  Q+ +   K+      TV  ++GG   E Q  
Sbjct: 343 ISELPPLNDVNKNDGPYALILAPTRELVQQIENEARKFATPLGFTVVSIVGGHSLEEQAY 402

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GA++++ TPGR++D   R  L+      +++DEADRM+D GF   +  I   +P T
Sbjct: 403 ALRNGAEIIVATPGRLVDCLERRLLVFTQCCYIIMDEADRMIDQGFEEPLTKILDALPVT 462

Query: 178 -------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS 212
                                    RQT++++ATM   ++++++ +L+ P  + +     
Sbjct: 463 NEKPDTEEAENPQLMKKYLGGKDRYRQTMMYTATMPPLVERIAKKYLRRPAIVTIGNAGE 522

Query: 213 TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             +T+E   V   A   K+   L+++L S       I+F N K+N   +   ++  GFS 
Sbjct: 523 AVDTVEQR-VEFIAGEDKRKNRLREILNSGQFKPPIIVFVNIKRNCEMVAKDIKSWGFST 581

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
             +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++P+  E+Y HR
Sbjct: 582 TTLHGSKTQEQREASLASVRNGQSSILVATDLAGRGIDVPDVSLVVNFNMPSSIESYTHR 641

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           IGRTGRAG+ G A T +  ED + +  ++++I K
Sbjct: 642 IGRTGRAGKSGVAITFLGNEDTEVMYDLKQIISK 675


>gi|303324443|ref|XP_003072209.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240111919|gb|EER30064.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5, putative
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 1197

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 134/373 (35%), Positives = 211/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  + +  +   GY +PT IQ + IP ++   DV G+A+TG+GKT +F+LPM   
Sbjct: 561 WSQCGLGVQTLDVIRKLGYEQPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRH 620

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++  R    M  P  LI+ PTRELA Q+    + + K  NL      GG P + Q  +L+
Sbjct: 621 IKDQRPLENMEGPVGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELK 680

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I S +  +
Sbjct: 681 RGAEIIVCTPGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIISNIRPS 740

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT    ++ ++   L  P  I V   S  A+ I    V    + +K   LL+ 
Sbjct: 741 RQTVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAQEITQ-IVEVRPENTKFVRLLEL 799

Query: 238 L--LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L  L S D  ++   +IF ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 800 LGNLYSDDNNEDARALIFVDRQEAADGLLRDLMRKGYPCMSIHGGKDQVDRDSTIDDFKA 859

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + +E 
Sbjct: 860 GIFPVLIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQ 919

Query: 354 IKHIDAIEKLIEK 366
            ++   I K +++
Sbjct: 920 ERYSVDIAKALKQ 932


>gi|239613976|gb|EEQ90963.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis ER-3]
          Length = 945

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 136/391 (34%), Positives = 214/391 (54%), Gaps = 38/391 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPL+L   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 88  FQSMGLNATLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 147

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q + +   
Sbjct: 148 LKNHSAKF-GSRALILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMAGN 206

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 207 PDIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPSSRQTLL 266

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ-- 240
           FSAT+   L + +   LQ P  I ++  S  +  +++ F  T     K+ ALL  L +  
Sbjct: 267 FSATLPKSLVEFARAGLQEPTLIRLDAESKISPDLQNAFF-TVKSSEKEGALLHLLHEVI 325

Query: 241 ------------SQDTMKN----------------------GIIFCNQKKNVVNLCHSLE 266
                       +++  KN                       IIF   K +V  L   L 
Sbjct: 326 KIPTGETEAHKRAKEEAKNPKKRKRSEFASNSHKESPTEHSTIIFTATKHHVDYLVSILR 385

Query: 267 KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
             GF+V   +G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D P++A
Sbjct: 386 ISGFAVSYAYGSLDQTARKIEVQNFRSGITHILVVTDVAARGIDIPILSNVINYDFPSQA 445

Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           + ++HR+GRT RAG+ G +++L+ + D  ++
Sbjct: 446 KIFVHRVGRTARAGKTGWSYSLIRESDAPYL 476


>gi|309262543|ref|XP_003085827.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Mus
           musculus]
 gi|309271943|ref|XP_003085450.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Mus
           musculus]
          Length = 670

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 131/364 (35%), Positives = 200/364 (54%), Gaps = 13/364 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 149 LKFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 208

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 209 VHIIHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 264

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 265 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 324

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 325 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 384

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +LS FK
Sbjct: 385 ILLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLSEFK 443

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 444 HGKASILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 503

Query: 353 DIKH 356
           +IK 
Sbjct: 504 NIKQ 507


>gi|318062704|ref|ZP_07981425.1| ATP-dependent RNA helicase [Streptomyces sp. SA3_actG]
          Length = 633

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 125/346 (36%), Positives = 188/346 (54%), Gaps = 5/346 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL   +V  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP+L  
Sbjct: 53  FAELGLPENIVRKLTQNGVTSPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLAS 112

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G    + PR +IL PTRELA QVAD  + YG   +L + ++ GG     Q   LERG
Sbjct: 113 LAGGFTDKKKPRGIILTPTRELAMQVADALQPYGDVLDLRMKVVCGGTSMSNQIYALERG 172

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+ D  NRG   +  + I ++DEAD+M D+GF+P +  +   VP   Q +L
Sbjct: 173 VDILVATPGRLRDLINRGACSLEKVRIAILDEADQMADLGFMPEVTELLDQVPAGGQRML 232

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ +E+  + + +L +P   EV+       T+ H  +    +   K  +   +   +
Sbjct: 233 FSATLENEIDALVKRYLVDPIAHEVDAAQGAVTTMSHHIL--IVKPRDKAPVTAAIASRK 290

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L   G    A+HG + Q +R ++L++FK+G + ++VA+
Sbjct: 291 GRT---IIFVRTQLGADRVAEQLRDAGVKADALHGGMTQGARTRVLADFKDGYVNVLVAT 347

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L
Sbjct: 348 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSL 393


>gi|149240601|ref|XP_001526175.1| ATP-dependent RNA helicase ded1 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152013500|sp|A5DZE6|DED1_LODEL RecName: Full=ATP-dependent RNA helicase DED1
 gi|146450298|gb|EDK44554.1| ATP-dependent RNA helicase ded1 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 664

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 133/341 (39%), Positives = 199/341 (58%), Gaps = 19/341 (5%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT---------ILEKGRARVR 71
           + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+         I E   A   
Sbjct: 195 FTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMNGPAPIPESTGAFSS 254

Query: 72  ---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
               P  L++ PTREL +Q+ D  +K+     +   ++ GG     Q ++L+RG D+L+ 
Sbjct: 255 HKVYPTILVMAPTRELVSQIYDESKKFAYRSWVRPCVVYGGADIGNQIRQLDRGCDLLVA 314

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----RQTLLFS 184
           TPGR+ D   RG++ + NI+ LV+DEADRMLDMGF P I++I           RQTL+FS
Sbjct: 315 TPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRHIVQECDMPDVQDRQTLMFS 374

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT   ++Q ++ +FL++   + V    ST+E I    +  Y +  +K +++  LL + ++
Sbjct: 375 ATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVL--YVEDEEKKSVILDLLNA-NS 431

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
               I+F   K+   NL   L  QGF   AIHG+  Q  R K L+ FK G   ++VA+ +
Sbjct: 432 EGLTIVFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGQAPILVATAV 491

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A
Sbjct: 492 AARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIA 532


>gi|332284754|ref|YP_004416665.1| ATP-dependent RNA helicase DbpA [Pusillimonas sp. T7-7]
 gi|330428707|gb|AEC20041.1| ATP-dependent RNA helicase DbpA [Pusillimonas sp. T7-7]
          Length = 444

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 134/353 (37%), Positives = 203/353 (57%), Gaps = 8/353 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           Y   T IQ +++PL+L   D+   A+TG+GKTA+F L ++  L+ G   ++    L+L P
Sbjct: 6   YQAMTLIQAQSLPLILAGQDLIAQAKTGSGKTAAFGLGIVHKLDPGAYNIQ---ALVLCP 62

Query: 81  TRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           TREL+ QVA+   +  +   N+ V  L GG P   Q + L+ GA +++ TPGR++DH  R
Sbjct: 63  TRELSEQVANELRRLARAIGNIKVITLCGGTPIRPQIESLKFGAHIVVGTPGRLMDHIER 122

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
             +  + +  LV+DEADRMLDMGF   +  I    P TRQT LFSAT  D+++K S  FL
Sbjct: 123 DTVDFSGLHTLVLDEADRMLDMGFYDDVTKIVGSCPGTRQTQLFSATYADDIRKASARFL 182

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
           + PK ++V +    A  IE  F    A   ++ + + QLL+     ++ + FCN K    
Sbjct: 183 RKPKEVKVESVHD-ASQIEQRFYEIDA--DRRHSAVAQLLE-HFRPESTLAFCNTKAQCR 238

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            L   LE +GFS  A+HG+++QR R  +L  F   +  ++VA+D+AARGLDI  +  V N
Sbjct: 239 ELAAYLESRGFSALALHGDLEQRDREDVLIQFANRSCSVLVATDVAARGLDIDALDAVIN 298

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
            ++    E +IHRIGRTGR    G A +L A  +++  + IE+   + + W N
Sbjct: 299 VEITPDPEVHIHRIGRTGRGDAKGLALSLCAPYEMRWANQIEQYQNQPISWAN 351


>gi|148701846|gb|EDL33793.1| mCG19408 [Mus musculus]
          Length = 615

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 131/364 (35%), Positives = 200/364 (54%), Gaps = 13/364 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LKFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 154 VHIIHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 209

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 270 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 329

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +LS FK
Sbjct: 330 ILLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLSEFK 388

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 389 HGKASILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448

Query: 353 DIKH 356
           +IK 
Sbjct: 449 NIKQ 452


>gi|226366438|ref|YP_002784221.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
 gi|226244928|dbj|BAH55276.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
          Length = 465

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 130/365 (35%), Positives = 199/365 (54%), Gaps = 10/365 (2%)

Query: 3   FADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F  LGL P V+   LD  G   P PIQ  TIP VL   DV G A TG+GKT +F LPML 
Sbjct: 16  FLALGL-PAVMTHALDRGGIAAPFPIQAATIPDVLAGRDVLGRAPTGSGKTLAFGLPMLV 74

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+   +R   PR ++L PTRELA Q+    ++   +  L VA ++GG+P + Q + L R
Sbjct: 75  RLKGAASRRGYPRGVVLVPTRELALQIERALDEPALSVGLRVANVVGGVPIKRQAETLSR 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+L+ TPGR+ DH  +G + ++++ +L +DEAD M D+GF+P +  I    P   Q L
Sbjct: 135 GVDLLVATPGRLADHLAQGSVSLDDVTVLALDEADHMADLGFLPQVTTILDKTPAGGQRL 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++  +   +L  P        ++   T+ H  +  Y     K +++  +   
Sbjct: 195 LFSATLDGDVDTLVRRYLHEPVTHSTAPAAAAVPTMRHHLL--YVDRRDKYSVVAHIGSR 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F   K  V  +   L   G +  A+HG   Q +R + L++F +GT  ++VA
Sbjct: 253 PGRT---LMFVRTKHGVDRVAQELHAAGVAAGALHGGKAQNNRTRTLASFADGTTPVLVA 309

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ +  +  V + D P  A++Y+HR GRT RAG  G   TLV +++     A+E
Sbjct: 310 TDVAARGIHVDGITLVVHVDPPTEAKDYLHRAGRTARAGESGVVVTLVTEDERA---AVE 366

Query: 362 KLIEK 366
           KL  +
Sbjct: 367 KLTRQ 371


>gi|78776342|ref|YP_392657.1| ATP-dependent RNA helicase DbpA [Sulfurimonas denitrificans DSM
           1251]
 gi|78496882|gb|ABB43422.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 457

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 141/359 (39%), Positives = 211/359 (58%), Gaps = 10/359 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L L+ +++  + + GY K + IQ +++P +L   DV   A+TG+GKTA+F + +L 
Sbjct: 6   EFSNLNLTKEMLHNLNEIGYTKMSDIQEQSLPFILDGKDVIAQAKTGSGKTAAFGIGLLH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120
            L+  + RV+    LIL PTREL+ QVA       + ++N+ +  L GG+ F  Q   L 
Sbjct: 66  KLQVKKFRVQ---ALILCPTRELSDQVARELRVLARFSHNIKILTLCGGVAFGPQLGSLR 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRIL H  +  L + +++ LV+DEADRMLDMGF   I  +   VP  RQT
Sbjct: 123 HGAHIIVGTPGRILKHLKKDTLSLEDVDTLVLDEADRMLDMGFSEEINEVLEFVPKNRQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT TDE+  +S++ +QN   I V T S+  A  IE  F       + K   +  +L
Sbjct: 183 LLFSATYTDEILDISKS-IQNGA-IHVKTTSTEIANKIEERFYEV--NNADKIKTVIDIL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S    +N IIF N K  V  +   L++      AIHG+++Q  R  +L  F   +  ++
Sbjct: 239 -SNFRPQNVIIFANTKVEVDEIAKRLQESKVDALAIHGDLEQYDRNDVLVQFANKSCPVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           VA+D+AARGLDI ++  V N+D+P+  E Y HRIGRT RAG  G AFTL +  + + +D
Sbjct: 298 VATDVAARGLDIKELSMVINYDLPHSLETYTHRIGRTARAGAEGLAFTLYSAYEEEKVD 356


>gi|164687290|ref|ZP_02211318.1| hypothetical protein CLOBAR_00931 [Clostridium bartlettii DSM
           16795]
 gi|164603714|gb|EDQ97179.1| hypothetical protein CLOBAR_00931 [Clostridium bartlettii DSM
           16795]
          Length = 480

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 121/367 (32%), Positives = 220/367 (59%), Gaps = 5/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L  +++ ++    Y  P+ +Q + IP++L + D+   ++TGTGK+A+F +P+   
Sbjct: 4   FNNFNLDTEILKSLDILDYKIPSQVQSRVIPVLLDKKDILVKSKTGTGKSAAFAIPICNK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++K   ++++   L++ PTRELA QV +  EK G+   +  ++++G  P + Q  +L++G
Sbjct: 64  IKKLENKLKV---LVIVPTRELALQVKEEIEKIGRLKMIKCSVILGKEPLKNQILELKQG 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +V++ TPGR++DH +RG + +++++  +IDE D+M   GF   I  I   +P T     
Sbjct: 121 TNVIVATPGRMIDHISRGSVDLDDLDYFIIDEVDKMFTKGFETDINTIMKNIPNTSCKAF 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++L+++   ++++ + IEV+        IE  ++    Q  K  AL   L + +
Sbjct: 181 FSATVDNDLKEICNGYMKDYEYIEVDEEEILKNQIEEKYIKVEKQELKYDALKNVLYKFK 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  IIF N KK    L  +++ +GF V  IHG+I Q  R  I+ +FK+    ++++S
Sbjct: 241 P--ETTIIFTNTKKQAEVLYENMKSEGFLVEQIHGDISQERRFYIIDSFKKHEFNILISS 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ +RG+ I DV  V N+D+P+ +E Y+HRIGRTGRAG+HGKA +LV+  + +  + IE 
Sbjct: 299 DIISRGIHIDDVSLVINYDIPSDSEIYVHRIGRTGRAGKHGKAISLVSNNECRDFENIEV 358

Query: 363 LIEKKVD 369
             + K++
Sbjct: 359 YTKNKIE 365


>gi|303287833|ref|XP_003063205.1| dead-box ATP-dependent RNA helicase [Micromonas pusilla CCMP1545]
 gi|226455037|gb|EEH52341.1| dead-box ATP-dependent RNA helicase [Micromonas pusilla CCMP1545]
          Length = 479

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 134/370 (36%), Positives = 201/370 (54%), Gaps = 34/370 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+ G   +++ AV  AGY  PTPIQ ++ P+ LQ +D+  +A+TG+GKT  ++ P +  
Sbjct: 20  FAEGGWPQQLLDAVTRAGYTSPTPIQAQSWPIALQGYDLISVAKTGSGKTVGYLFPGIMH 79

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +   RAR   PR +     +L PTRELA Q+ +   K+G+   +    L GG P   Q +
Sbjct: 80  I---RARANGPRPVGPTVAVLAPTRELATQIQEETAKFGRAIGMFSVCLYGGAPKGMQLR 136

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G  + I TPGR+ D    G + + +   +V+DEADRMLDMGF P I+ I +  P  
Sbjct: 137 ELRSGPQIAIATPGRLNDFLESGAVNLGSATYVVLDEADRMLDMGFEPQIRKILARAPPA 196

Query: 178 RQ------------TLLFSATMTDELQKVSENFLQNPKRIEVNTPSS------TAETIEH 219
           RQ            TL F+AT    + +V+   L NP ++ +    S       ++ IE 
Sbjct: 197 RQARSISHWSPCDPTLFFTATWPKAVVRVATAILTNPIQVNIGDTDSLVANKDISQVIEV 256

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
           C       + K+  L++ L          I+FC+ K+    +  S+   G     IHG+ 
Sbjct: 257 C-----GGFQKQQRLMEVLRNPPAQPLKAIVFCSTKRMCDQIGRSMGGMG---AVIHGDK 308

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
           +QR R  I++ FK G + ++VA+D+AARGLDI +V  V NFD PN+ E+Y+HRIGRTGRA
Sbjct: 309 EQRERDYIINQFKSGRVPVLVATDVAARGLDIKEVNLVVNFDFPNQIEDYVHRIGRTGRA 368

Query: 340 GRHGKAFTLV 349
           G  G A + +
Sbjct: 369 GNKGHAHSFI 378


>gi|219686271|dbj|BAH08688.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Pagrus major]
          Length = 631

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 135/363 (37%), Positives = 207/363 (57%), Gaps = 14/363 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 196 MTFDEAGLCESLRKTVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 255

Query: 61  T-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G A      ++ P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 256 QQLMADGVAASSFSELQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGVSTGY 315

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++L RG +VL  TPGR++D   RGK+ ++ +  LV+DEADRMLDMGF P ++ +    
Sbjct: 316 QIRELCRGCNVLCGTPGRLMDVIGRGKVGLSKLRYLVLDEADRMLDMGFEPAMRRLVGSP 375

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  D++Q++  +FL+     + V    +    +E  FV    ++S
Sbjct: 376 GMPSKENRQTLMFSATYPDDIQRMGADFLKTDYLFLAVGVVGAACNDVEQTFVQV-TKFS 434

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  L   LL++  T +  ++F   K+    +   L ++     +IHG+ +QR R   L+
Sbjct: 435 KREQLFD-LLKTTGTERT-MVFVETKRQADFIATYLCQEKVPTTSIHGDREQRERELALA 492

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G   +MVA+ +AARGLDIPDV HV NFD+P   + Y+HRIGRTGR G  G+A +  
Sbjct: 493 DFRSGKCPVMVATSVAARGLDIPDVQHVVNFDLPKDIDEYVHRIGRTGRCGNTGRAVSFY 552

Query: 350 AKE 352
             E
Sbjct: 553 DPE 555


>gi|242005222|ref|XP_002423470.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212506558|gb|EEB10732.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 422

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 138/369 (37%), Positives = 206/369 (55%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L+  +V      G  KPTPIQ   IP +L+ +D  G A+TG+GKT +F LP+L  
Sbjct: 5   FEDLNLNKWIVRQCDSFGLTKPTPIQAHCIPKILEGNDCIGCAKTGSGKTLAFALPILQK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     L+L PTRELA Q+ + F  YGK  NL + ++ GG+    Q ++L + 
Sbjct: 65  LSEEPFGIF---ALVLTPTRELAFQIGEQFLAYGKVINLKLCVISGGMDMVTQGQELSKR 121

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++ TPGR+ DH +      +  I  LV+DEADR+L   F   I  I   +P  +Q L
Sbjct: 122 PHIVVSTPGRLADHLDSCNTFSLKKIRFLVLDEADRLLSGQFDDQISTIFKSLPLKKQIL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--QLL 239
           LFSAT+ D L++  E   +N       +  +T + ++  +V     + K   L++  QL 
Sbjct: 182 LFSATINDTLKQAEELLSKNVFSFIDKSDVATVDNLQQFYVLC-PDHVKDAYLVEVIQLY 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +   N IIF +  +N   L  +L + GF   AIH  + Q+ R+  LS FK   ++ +
Sbjct: 241 RKNNENGNIIIFTDTCRNCQLLSMTLNEVGFENVAIHSMMKQKERLAALSRFKSNIVKTL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLDIP V  V N  +PN  ++YIHR+GRT RAGR G + +LV   DIK I A
Sbjct: 301 IATDIASRGLDIPTVELVINHSIPNVPKDYIHRVGRTARAGRAGMSVSLVTPVDIKLIHA 360

Query: 360 IEKLIEKKV 368
           IE +I  K+
Sbjct: 361 IESIINTKL 369


>gi|182416631|ref|ZP_02948044.1| cold-shock deAd box protein a [Clostridium butyricum 5521]
 gi|237668564|ref|ZP_04528548.1| putative helicase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182379523|gb|EDT77009.1| cold-shock deAd box protein a [Clostridium butyricum 5521]
 gi|237656912|gb|EEP54468.1| putative helicase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 369

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 207/368 (56%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  LG+  ++V  +   G   PTPIQ ++I ++    D+   A TGTGKT +F+LP  
Sbjct: 1   MDFKKLGICKELVDILNKNGISAPTPIQEESIEIIKNGKDIIAEAGTGTGKTLAFLLP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I E+   + +  + LIL PTRELA Q+ +  +K  ++  + V    GG    +Q KKL 
Sbjct: 59  -IFEQINPKSKDVQALILTPTRELALQITNEADKLNEDKKINVLACYGGKDISSQLKKLN 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+LDH  R  + +  ++  V+DEAD+ML MGF   ++ I   +   +Q 
Sbjct: 118 KNVQLIVATPGRLLDHIERKTIDLKTVKTFVLDEADQMLFMGFKNEVEKIMEQMSKKKQM 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++  ++ +P  I V        +I+  FV       K+ AL + L +
Sbjct: 178 LCFSATMDSEVKKLAYRYMNDPAIISVKKEEVDMHSIKQ-FVVETTDRQKRDALCKVLDE 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               M   IIFC  K+   +L   +  + ++   IH +I Q  R +I+ +F+E  +Q ++
Sbjct: 237 DNPFM--AIIFCRTKRRADDLETVMATRKYNCAKIHSDIAQNKRERIMKSFREAKLQYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V H++N+D+P   E+Y+HRIGRTGRAG  G     V  ++ + ++ I
Sbjct: 295 ATDVAARGLDITGVTHIYNYDIPETPESYVHRIGRTGRAGESGITCMFVDPKNKRALEEI 354

Query: 361 EKLIEKKV 368
           E  I  K+
Sbjct: 355 EDTIGFKI 362


>gi|315182608|gb|ADT89521.1| DEAD-box ATP dependent DNA helicase [Vibrio furnissii NCTC 11218]
          Length = 412

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 209/369 (56%), Gaps = 11/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS +++ A L     +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 1   MPFSTLSLSSELIHA-LPKDVKQPTDIQALAIPELLAGKDVLALANTGSGKTLAYALPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   +    + LIL PTRELA QV++   + G+ + L    L GG+    Q + L 
Sbjct: 60  DKLNENPQQ----KALILVPTRELAIQVSEAINQVGQAFELNAVCLCGGVDKALQQQALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               + + T GR++D  N G L +++I  LV+DEADR+LDMGF P +QNI       RQT
Sbjct: 116 TNPHIFVATTGRLVDLVNHG-LDLSHIHTLVLDEADRLLDMGFWPDVQNIAMQTANQRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLL 239
            +FSAT ++ L++ ++  +  PK++  +  +ST + I E  F+      SK  AL++  L
Sbjct: 175 AMFSATFSEALKEKAKQLMHAPKQVAAHQENSTNQDITETLFLVNKG--SKTKALIE--L 230

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+     ++F   K+N   L   L K G S  A+HGN  Q  R + L+ FK G + ++
Sbjct: 231 IQQNAWTRVLVFIGAKENADGLAKKLNKAGVSTTALHGNKSQDEREQALAQFKSGQVNVL 290

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG  G A +LV   ++  ++A
Sbjct: 291 IATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVAMSLVCHGEMDALNA 350

Query: 360 IEKLIEKKV 368
           I  L ++ +
Sbjct: 351 IRHLTQRAL 359


>gi|260776996|ref|ZP_05885890.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606662|gb|EEX32936.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 449

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 134/388 (34%), Positives = 212/388 (54%), Gaps = 10/388 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + + T IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 7   LHFKDLGLDNRLLKNLKHFDFKQATEIQQQAIPVSIAGKDLLASSKTGSGKTLAFVLPML 66

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   + PR +IL PTRELA QV           +    L++GG  F  Q K L
Sbjct: 67  HKSLKNKAFSAKDPRGVILAPTRELAKQVYGELRSMLGGLSYDATLIVGGENFNDQVKAL 126

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGR+ DH +   L ++ +E L++DEADRMLD+GF P ++ I +     R 
Sbjct: 127 RRYPKFIVATPGRLADHLDHRSLYLDGLETLILDEADRMLDLGFAPELRRIHNAAKHRRR 186

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+   E+ +++   L  PKRI +   +   + I   F         K A+L++
Sbjct: 187 QTLMFSATLDHAEVNEIAFEMLDAPKRIAIGVSNEEHKDITQKFYLC-DHLDHKEAILER 245

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+  +  K  IIF   + +   L   L ++     A+ GN++Q  R  I+S F+    +
Sbjct: 246 ILEEAE-YKQLIIFTATRVDTERLTDKLNEKKLKAIALSGNLNQTQRNTIMSQFERAVFK 304

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLDI +V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D    
Sbjct: 305 ILVTTDVASRGLDIANVTHVVNFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSF 364

Query: 358 DAIEKLIEK-----KVDWLNGDLSSLNP 380
             +E  +++     +++ L G    + P
Sbjct: 365 KRVEAYLQQDLTFSELEGLKGKFKGIKP 392


>gi|220678758|emb|CAX13889.1| novel protein similar to vertebrate DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 43 (DDX43) [Danio rerio]
 gi|220678952|emb|CAX13571.1| novel protein similar to vertebrate DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 43 (DDX43) [Danio rerio]
          Length = 719

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 132/361 (36%), Positives = 212/361 (58%), Gaps = 7/361 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG--- 66
           P ++  ++  G+ KPTPIQ +  P+VL   D+ GIAQTGTGKT +++LP    ++     
Sbjct: 287 PGIMENIVRVGFKKPTPIQSQAWPVVLNGIDLIGIAQTGTGKTLAYLLPGFIHMDGQPMP 346

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTRELA Q+     KY      ++ +  GG    AQ K +  G D++
Sbjct: 347 RDKRNGPGMLVLTPTRELALQIEAECNKYSYKGFKSICIYGGG-DRNAQIKVVTSGVDIV 405

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + +I  LV+DEADRMLDMGF P I  I   +   RQT++ SAT
Sbjct: 406 IATPGRLNDLQMNELINLRSITYLVLDEADRMLDMGFEPQIMKIILDIRPDRQTVMTSAT 465

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
               ++++++++L++P  + V T    A  T++   +  + Q  +K   +   +   + +
Sbjct: 466 WPPGVRRLAKSYLKDPMMVYVGTLDLAAVNTVQQTVL--FVQEDEKKDYVFDFIHRMEPL 523

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              +IF  +K    +L   L  QG +V ++HG+ +Q  R + L +FK+G ++++VA+DLA
Sbjct: 524 DKVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREEALQDFKDGRVRILVATDLA 583

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLD+ D+ HVFN+D P   E Y+HR+GRTGRAGR G++ TLV +ED +    +  ++E
Sbjct: 584 SRGLDVHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESVTLVTREDWRVAAELITILE 643

Query: 366 K 366
           +
Sbjct: 644 R 644


>gi|56756857|gb|AAW26600.1| SJCHGC06283 protein [Schistosoma japonicum]
          Length = 402

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 207/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+ +P+ IQ + I  +++  DV   AQ+GTGKTA+  + +L +
Sbjct: 31  FDSMCLRDDLLRGIYAYGFERPSAIQQRAIKQIIKGRDVIAQAQSGTGKTATLGISILQM 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    ++R  + L+L PTRELA+Q+       G   N+      GG       +KL+ G
Sbjct: 91  LD---TQLRETQALVLSPTRELASQIQKVILALGDYTNVHCHACYGGTNIGEDIRKLDYG 147

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    +++ V+DEAD MLD GF   I ++   +P   Q +L
Sbjct: 148 QHVISGTPGRVFDMIRRRSLRTRAVKLFVLDEADEMLDKGFKEQIYDVYRYLPPGTQVVL 207

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SATM  E+ +++  F+ NP RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 208 LSATMPHEILEMTSKFMTNPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 266

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + K  F+V ++HG++ Q+ R KI+ +F+ G  +++
Sbjct: 267 ----TVTQSVIFCNTKRKVAWLTEKMLKNNFTVASMHGDMVQKEREKIMKDFRAGDSRVL 322

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +  
Sbjct: 323 ITTDLWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKTDDIKILRD 382

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  ++S L
Sbjct: 383 IEQYYSTQIDEMPMNVSDL 401


>gi|320037247|gb|EFW19185.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Coccidioides
           posadasii str. Silveira]
          Length = 853

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 134/373 (35%), Positives = 211/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  + +  +   GY +PT IQ + IP ++   DV G+A+TG+GKT +F+LPM   
Sbjct: 217 WSQCGLGVQTLDVIRKLGYEQPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRH 276

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++  R    M  P  LI+ PTRELA Q+    + + K  NL      GG P + Q  +L+
Sbjct: 277 IKDQRPLENMEGPVGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELK 336

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I S +  +
Sbjct: 337 RGAEIIVCTPGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIISNIRPS 396

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT    ++ ++   L  P  I V   S  A+ I    V    + +K   LL+ 
Sbjct: 397 RQTVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAQEITQ-IVEVRPENTKFVRLLEL 455

Query: 238 L--LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L  L S D  ++   +IF ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 456 LGNLYSDDNNEDARALIFVDRQEAADGLLRDLMRKGYPCMSIHGGKDQVDRDSTIDDFKA 515

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + +E 
Sbjct: 516 GIFPVLIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQ 575

Query: 354 IKHIDAIEKLIEK 366
            ++   I K +++
Sbjct: 576 ERYSVDIAKALKQ 588


>gi|322490767|emb|CBZ26031.1| putative DEAD box RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 527

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 211/361 (58%), Gaps = 5/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL  ++  A  +AG+  PT IQ   I +  +  D+ G+AQTG+GKT ++ LP++  
Sbjct: 55  FQDLGLCEELCSACAEAGWQHPTRIQASAITVFAEGRDLIGVAQTGSGKTGAYALPLVNW 114

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   R    +   L++ PTRELA QV   F   G++  L VA L+GG     Q  +L + 
Sbjct: 115 LLTQRKTPYLS-VLVMVPTRELAQQVTAQFVLLGRSVGLRVATLVGGADMVEQACELSKR 173

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             V++ TPGR+ DH +  K   +  +  LV+DEAD+MLDM +   I  I   +P  R+T+
Sbjct: 174 PHVIVGTPGRVKDHLSNTKGFKLVKLHALVLDEADKMLDMDYEKEIDAILEQLPQDRRTM 233

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT++ ++ ++ +  L +P  ++V+  ++T +T++  ++  +A +++  + L   L +
Sbjct: 234 LFSATLSTKIDRLQKASLLDPVLLQVHRKNTTVDTLKQYYI--FAPFAQMLSYLHLFL-T 290

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++T  + +IFC     V  +  +L   G     + G +DQ +R   L+ FKEG +++++ 
Sbjct: 291 KETGNHILIFCRSAALVHKITLALRILGHRALPLMGRMDQSNRNIALTKFKEGKVRMLIC 350

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A RGLDIP    V NF +P+  E+YIHR+GRT RAG  GKA  L+++ DI  +  IE
Sbjct: 351 TDVAQRGLDIPHTDVVVNFSLPDHVEDYIHRVGRTARAGAEGKAVNLISQYDIVLLQKIE 410

Query: 362 K 362
           +
Sbjct: 411 Q 411


>gi|301093191|ref|XP_002997444.1| ATP-dependent RNA helicase eIF4A, putative [Phytophthora infestans
           T30-4]
 gi|262110700|gb|EEY68752.1| ATP-dependent RNA helicase eIF4A, putative [Phytophthora infestans
           T30-4]
          Length = 411

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 210/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+ KP+ IQ + +  +L  HD    AQ+GTGKTA+F +   +I
Sbjct: 40  FDGMDLREDLLRGIYAYGFEKPSAIQQRAVKPILLGHDCIAQAQSGTGKTATFAV---SI 96

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    ++  + LIL PTRELA Q+       G   ++ V   +GG       + L++G
Sbjct: 97  LQKIDINLKETQALILAPTRELAQQIVKVVVAIGDYMSVQVHACVGGTAVRDDIRTLQQG 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ D  NR  L  + +++ V+DEAD ML  GF   I  +   +P   Q  L
Sbjct: 157 VHIVVGTPGRVGDMINRRALRTDEVKMFVLDEADEMLSRGFKDQIYEVFRFLPEKVQVAL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT---YAQYSKKCALLQQLL 239
           FSATM  ++ +V+  F++ P RI V     T E I+  F+A      ++   C L + L 
Sbjct: 217 FSATMPLDVLEVTHRFMREPIRILVKRDELTLEGIKQFFIAIDREEWKFDTLCDLYETL- 275

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   II+CN ++ V  L   ++ + F+V A+HG+++QR R  I+  F+ G+ +++
Sbjct: 276 ----TITQAIIYCNTRRKVDWLTEKMQSKDFTVSAMHGDMEQRERDIIMREFRSGSSRVL 331

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   +   D++++  
Sbjct: 332 ITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTHNDVRYLRD 391

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 392 IEQFYNTQIDEMPMNVADL 410


>gi|311746403|ref|ZP_07720188.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1]
 gi|126575289|gb|EAZ79621.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1]
          Length = 399

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 194/347 (55%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L   ++  + + GY   T IQ ++I  +L+  D+ GI+ TG+GKT +F++P   I
Sbjct: 57  FASLSLDSVMMRNLSEKGYENMTNIQEQSIEALLEGRDLLGISNTGSGKTGAFLIP---I 113

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E           LI+ PTRELA Q+   F+   K   L  A  IGG       K L R 
Sbjct: 114 IEHALKNPGQFTALIVTPTRELALQIDQEFKSLSKGMRLHSATFIGGTNINTDMKVLSRK 173

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+LD  NR  L +N ++ LV+DE DRMLDMGF+  ++ +   +    QT+L
Sbjct: 174 LHVIVGTPGRLLDLTNRKLLKLNQVKTLVLDEFDRMLDMGFVNDVKKLVGGMTQREQTML 233

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+    + + ++ L+NP  +++NT  ST E IE   +    +   K  +L  L Q++
Sbjct: 234 FSATLEPNQKNLIQSLLKNPVEVKINTGVSTNENIEQGIIR-VPEGKDKFGMLADLFQNR 292

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             M   I+F   K+    L   L + G     IHGN  Q  R K +  FK G  +++VA+
Sbjct: 293 -AMDKVIVFTETKRLADRLSKKLNQAGVKSGLIHGNKSQNFRNKTIEQFKSGETRVLVAT 351

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+ DV HV N+ +P   ++YIHRIGRTGRAG+ G A T V
Sbjct: 352 DVAARGIDVADVSHVINYQLPMTMDSYIHRIGRTGRAGKTGHAITFV 398


>gi|147902730|ref|NP_001084200.1| eukaryotic initiation factor 4A-III-B [Xenopus laevis]
 gi|82189798|sp|O42226|I4A3B_XENLA RecName: Full=Eukaryotic initiation factor 4A-III-B;
           Short=XeIF-4AIII; Short=eIF-4A-III-B; Short=eIF4A-III-B;
           AltName: Full=ATP-dependent RNA helicase DDX48-B;
           AltName: Full=ATP-dependent RNA helicase eIF4A-3-B;
           AltName: Full=DEAD box protein 48-B; AltName:
           Full=Eukaryotic translation initiation factor 4A isoform
           3-B
 gi|2443810|gb|AAB71410.1| eukaryotic translation initiation factor XeIF-4AIII [Xenopus
           laevis]
          Length = 414

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 208/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ K I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 43  FDTMGLREDLLRGIYAYGFEKPSAIQQKAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQC 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    ++R  + LIL PT+ELA Q+       G   N+     IGG       +KL+ G
Sbjct: 103 LD---IQIRETQALILAPTKELARQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q  L
Sbjct: 160 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCL 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 220 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 279 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 335 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 394

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 395 IEQYYSTQIDEMPMNVADL 413


>gi|145517226|ref|XP_001444496.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124411918|emb|CAK77099.1| unnamed protein product [Paramecium tetraurelia]
          Length = 434

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 131/381 (34%), Positives = 211/381 (55%), Gaps = 6/381 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL LS  ++  +   G+ +P+ IQ K I  ++   DV   AQ+GTGKT +F +  L  
Sbjct: 58  FEDLTLSKDLLRGIFSYGFERPSAIQQKAIKPIILGKDVLAQAQSGTGKTGTFTIGALQR 117

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +   R  + +IL P RELA Q+ D  +  G+  N+     IGG   +   +K ++G
Sbjct: 118 IDPNQ---RKTQVIILAPVRELAKQIYDVVKGIGQYLNIEAFCCIGGTSTQETREKCKQG 174

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++I TPGR++D      L    + +LV+DEAD+MLD GF      I  +VP   Q  L
Sbjct: 175 VHIIIATPGRLIDMMKNKYLDATFMRLLVVDEADQMLDQGFSDNFAEILKMVPGDIQIAL 234

Query: 183 FSATMTDELQKVSENFLQN-PKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT   E+ ++S+ FL++   +I V     T E I   ++A   Q  +K  +L +L ++
Sbjct: 235 FSATFPQEIIELSKQFLRDGTAKILVKKEQLTLEGIRQFYIAI-QQEDQKFKVLVELYKN 293

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   I+FCN KK V +L   L  +GF+V  IH  ++Q+ R +++  FK+G  +++V+
Sbjct: 294 L-TVSQSILFCNSKKTVDDLYDKLTAEGFTVSKIHSQMEQKEREQVMQEFKKGAARILVS 352

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+D+  +  V N++ P   E YIHR+GR GR GR G A  +VA+++   +  +E
Sbjct: 353 TDLMGRGIDVQQLSLVINYEFPRLKEQYIHRVGRAGRYGRKGVAINMVAQQEANLLLEVE 412

Query: 362 KLIEKKVDWLNGDLSSLNPPL 382
           K    K+D +  DL+ +   L
Sbjct: 413 KYYNTKIDEMPKDLAEVEKEL 433


>gi|259908378|ref|YP_002648734.1| ATP-dependent RNA helicase DbpA [Erwinia pyrifoliae Ep1/96]
 gi|224964000|emb|CAX55505.1| ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
 gi|283478319|emb|CAY74235.1| ATP-dependent RNA helicase dbpA [Erwinia pyrifoliae DSM 12163]
          Length = 459

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 136/361 (37%), Positives = 209/361 (57%), Gaps = 10/361 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY+  TP+Q +++P +L   DV   A+TG+GKTA+F    L ++ +  A   + + L+L 
Sbjct: 22  GYLAMTPVQAESLPAILAGRDVRAQAKTGSGKTAAF---GLGVMHRVDASQYVTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QV     +  +   N+ +  L GG P  AQ   L     +++ TPGRILDH  
Sbjct: 79  PTRELADQVTKELRRLARFTSNIKILTLCGGQPVGAQRDSLLHAPHIVVGTPGRILDHLK 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           R  L ++ I  LV+DEADRML+MGF   I  I S  P  RQTLLFSAT    + ++S++ 
Sbjct: 139 RETLKLDAISTLVLDEADRMLEMGFREDIDTIISHSPQARQTLLFSATWPQAIAQISQSI 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            ++P  IE    S     IE  F    A+  K  AL+  L + Q +  + ++FCN K+  
Sbjct: 199 QRDPLTIETGDVSDL-PAIEQTFYEAGAR-EKLTALIGLLSERQPS--SCVVFCNTKREC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             + ++L+K   S   +HG+++QR R ++L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 DEIAYALDKAQISAQPLHGDLEQRERDRMLIRFANGSCRVLVATDVAARGLDIKALAMVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           N+ +    E ++HRIGRT RAG+ G A + VA +++    A+E  +++K+ W N  LS+L
Sbjct: 315 NYQLSFDPEVHVHRIGRTARAGQEGCAVSFVAPDEMIRAHALEDYLQQKLVWCN--LSAL 372

Query: 379 N 379
            
Sbjct: 373 K 373


>gi|299530392|ref|ZP_07043815.1| hypothetical protein CTS44_06434 [Comamonas testosteroni S44]
 gi|298721617|gb|EFI62551.1| hypothetical protein CTS44_06434 [Comamonas testosteroni S44]
          Length = 430

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 146/419 (34%), Positives = 217/419 (51%), Gaps = 28/419 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL  +++ A LD G    TPIQ + IP VL   D+   A TG+GKT +++LP+L
Sbjct: 1   MSFAPLGLRAELLDATLDLGLRDATPIQTEAIPAVLAGRDLWACAPTGSGKTMAYLLPLL 60

Query: 61  -TILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEA 114
              L + R     VR   TLIL PTRELA QV ++     +         ++ GG+    
Sbjct: 61  QAWLAQKRGHTGFVRPLATLILVPTRELALQVHESLNDITRQLREQPRSRVVYGGVSINP 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  +L   AD L+ TPGR+LD      + +N ++ LV+DEADR+LD GF   +  + +L+
Sbjct: 121 QMMQLRGSADFLVATPGRLLDLVEHNAVRLNAVQHLVLDEADRLLDQGFAEELNRVLALL 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP-----SSTAETIEHCFVATYAQYS 229
           P  RQTLL SAT    ++ ++   L +P R++V+       S++ E I    +A      
Sbjct: 181 PAKRQTLLLSATFPQNVEALATRLLHDPVRVQVDADQAAEHSTSPENISQRAIAVDG--P 238

Query: 230 KKCALLQQLL---QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           ++  LL+QL+   ++Q   +  ++F  ++     L   L K G      HG++ Q +R  
Sbjct: 239 RRTQLLRQLVKQGENQPEWERALVFVAKRHTAEMLADKLYKAGIYATTFHGDMSQGARKD 298

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
           +L  FK    QL++ +DLAARG+DI  +  V N+D+P    +YIHRIGRTGRAG  G A 
Sbjct: 299 VLDQFKAKRWQLLITTDLAARGIDIAQLPTVINYDLPRSPADYIHRIGRTGRAGHAGCAI 358

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           T V+  D  H   I K  + ++D            LE+I   +   A    P+ Q   G
Sbjct: 359 TFVSPADTAHWKLICKRNQLEID------------LEQIQGFEPTEAVPPPPVAQDGNG 405


>gi|260947802|ref|XP_002618198.1| hypothetical protein CLUG_01657 [Clavispora lusitaniae ATCC 42720]
 gi|238848070|gb|EEQ37534.1| hypothetical protein CLUG_01657 [Clavispora lusitaniae ATCC 42720]
          Length = 692

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 205/364 (56%), Gaps = 23/364 (6%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKG 66
           L P +V  +  + + KPTP+Q  ++P+V  + D+   AQTG+GKT  F+ P+L+     G
Sbjct: 231 LDPLLVENITLSRFTKPTPVQKYSVPIVCNKRDLMACAQTGSGKTGGFLFPVLSECFMSG 290

Query: 67  RA-----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            A               P  LI+ PTREL +Q+ +  +KY     +  A+  GG+    Q
Sbjct: 291 PAPQPEPTGAFSFNKVYPTILIMAPTRELVSQIFEEAKKYCYRSWVRPAVAYGGVDIGQQ 350

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L+RG D+L+  PGR+ D   RG++ + N++ LV+DEADRMLDMGF P I++I     
Sbjct: 351 IRTLQRGCDLLVAAPGRLTDLLERGRVSLCNVKYLVLDEADRMLDMGFEPQIRHIVQECD 410

Query: 176 FT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTL+FSAT    +Q ++ +FL++   + V    ST+  I    +    +  +K
Sbjct: 411 MPDVQDRQTLMFSATFPRNIQMLARDFLKDYVFLSVGRVGSTSANITQKVL--LVEDDEK 468

Query: 232 CALLQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            +++  LL + D   NG  I+F   K+    L   L  QGF   AIHGN  Q  R K L+
Sbjct: 469 RSVILDLLSAAD---NGLTIVFTETKRMADYLADFLYDQGFPATAIHGNRTQYEREKALA 525

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK GT  ++VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A +  
Sbjct: 526 AFKNGTAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNTGIATSFF 585

Query: 350 AKED 353
            + +
Sbjct: 586 NRNN 589


>gi|71029108|ref|XP_764197.1| RNA helicase [Theileria parva strain Muguga]
 gi|68351151|gb|EAN31914.1| RNA helicase, putative [Theileria parva]
          Length = 635

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 134/361 (37%), Positives = 206/361 (57%), Gaps = 10/361 (2%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR 71
           ++ ++  AG+ +PTPIQ+++ P+ L   D+ GIA+TG+GKT +F+LP +  +   +A +R
Sbjct: 221 ILSSIEAAGFKEPTPIQVQSWPIALSGRDMIGIAETGSGKTLAFLLPAIVHI-NAQALLR 279

Query: 72  M---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
               P  L+L PTRELA Q+ +    +G++  L  ++  GG+P   Q   L RG ++LI 
Sbjct: 280 PGDGPIVLVLAPTRELAEQIKETALVFGRSSKLKTSVAYGGVPKRFQTIALRRGVEILIA 339

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
            PGR++D        +  +  LV+DEADRMLDMGF P I+ I   +   RQTL+FSAT  
Sbjct: 340 CPGRLIDFLESSVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLMFSATWP 399

Query: 189 DELQKVSENFLQNPKRIEVNTPS---STAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
            E+  +S + L + + + VN  S   +T   IE   V    +  K+  L + L +  D  
Sbjct: 400 KEVIALSRSLLSH-EVVHVNIGSLDLTTCHNIEQN-VFILEEREKRVKLKELLKKLMDGG 457

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
           K  +IF   KK    L   L   G+    IHG+  Q  R  +L+ FK G   +M+A+D+A
Sbjct: 458 KI-LIFSETKKGADTLTRELRLDGWPALCIHGDKKQEERTWVLNEFKSGKHPIMIATDVA 516

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLD+ DV +V N+D P + E+Y+HRIGRTGRAG  G ++T +  +  K    + KL+ 
Sbjct: 517 SRGLDVRDVKYVINYDFPGQIEDYVHRIGRTGRAGMKGSSYTFLTPDKFKSARELVKLMR 576

Query: 366 K 366
           +
Sbjct: 577 E 577


>gi|291165173|gb|ADD81191.1| vasa [Euthynnus affinis]
          Length = 640

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 132/359 (36%), Positives = 205/359 (57%), Gaps = 14/359 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 204 MTFDEAALCESLRKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 263

Query: 61  T-ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G A  R      P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 264 QQLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGH 323

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q +++ RG +V+  TPGR+LD   RGK+ +  +  LV+DEADRMLDMGF P ++ + S  
Sbjct: 324 QIREISRGCNVVCGTPGRLLDMIGRGKVGLTKLRYLVLDEADRMLDMGFEPDMRRLVSSP 383

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +++Q+++ +FL+     + V         +E  F+    ++S
Sbjct: 384 GMPSKENRQTLMFSATYPEDIQRLAADFLKTDYLFLAVGVVGGACSDVEQTFIQV-TKFS 442

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL  L  +   M+  ++F   K+    +   L ++     +IHG+ +QR R + L+
Sbjct: 443 KREQLLDLLKTT--GMERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALA 500

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +F+ G   ++VA+ +AARGLDIPDV HV NFD+PN  + Y+HRIGRTGR G  G+A + 
Sbjct: 501 DFRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSF 559


>gi|295837571|ref|ZP_06824504.1| ATP-dependent RNA helicase [Streptomyces sp. SPB74]
 gi|295826577|gb|EDY45280.2| ATP-dependent RNA helicase [Streptomyces sp. SPB74]
          Length = 738

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 126/346 (36%), Positives = 188/346 (54%), Gaps = 5/346 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL   +V  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP+L  
Sbjct: 55  FAELGLPEGIVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLAQ 114

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G    + PR +IL PTRELA QVAD  + YG   +L + ++ GG     Q   LERG
Sbjct: 115 LAGGFTDKKKPRGVILTPTRELAMQVADALQPYGDVLDLRMKVVCGGTSMGNQIYALERG 174

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+ D  NRG   +  ++I ++DEAD+M D+GF+P +  +   VP   Q +L
Sbjct: 175 VDILVATPGRLRDLINRGACSLEKVQIAILDEADQMADLGFMPEVTELLDQVPAGGQRML 234

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ +E+  + + +L NP   EV+       T+ H  +    +   K  +   +   +
Sbjct: 235 FSATLENEIDALVKRYLVNPVAHEVDAAQGAVTTMSHHIL--IVKPRDKAPVTAAIASRK 292

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L   G    A+HG + Q +R ++L++FK+G +  +VA+
Sbjct: 293 GRT---IIFVRTQLGADRVAEQLRDAGVKADALHGGMTQGARTRVLADFKDGYVNALVAT 349

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L
Sbjct: 350 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSL 395


>gi|164655646|ref|XP_001728952.1| hypothetical protein MGL_3946 [Malassezia globosa CBS 7966]
 gi|159102840|gb|EDP41738.1| hypothetical protein MGL_3946 [Malassezia globosa CBS 7966]
          Length = 396

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 129/370 (34%), Positives = 202/370 (54%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   ++  +    + KP+ IQ + I  +L+  DV   AQ+GTGKTA+F + ML  
Sbjct: 25  FDSLGLKDDLLRGIYAYNFEKPSAIQQRAILPILRGRDVIAQAQSGTGKTATFSIAMLQT 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     +R  + L+L PTRELA Q+       G   N+     IGG       +KLE G
Sbjct: 85  ID---ISLRETQALVLSPTRELATQIQSVVLALGDYMNVQCHACIGGTSVGEDIRKLEYG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L   NI++L++DE+D +L+MGF   I +I   +P   Q +L
Sbjct: 142 QHIVSGTPGRVFDMIRRRHLRTKNIKMLIMDESDELLNMGFKDQIYDIYRYLPPATQVVL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 202 VSATLPHDVLEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTL- 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F V ++HG + Q+ R  I+  F++G  +++
Sbjct: 261 ----TITQAVIFCNTRRKVDWLTDRMRENNFQVSSMHGEMQQKERDAIMGEFRQGGSRVL 316

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+ +V  V N+D+P   ENYIHRIGR+GR GR G A   V  ED+K +  
Sbjct: 317 ITTDVWARGIDVQNVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTTEDVKILRD 376

Query: 360 IEKLIEKKVD 369
           IE+    ++D
Sbjct: 377 IEQYYSTQID 386


>gi|312375048|gb|EFR22493.1| hypothetical protein AND_15188 [Anopheles darlingi]
          Length = 879

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 149/434 (34%), Positives = 234/434 (53%), Gaps = 13/434 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP L  
Sbjct: 210 FYQMDLSRPLMKAIGALGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTLER 269

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L K  A   + R L+L PTREL AQV    ++  +  N+ V + IGG+  +AQ   L  
Sbjct: 270 LLYKPNAAQAVTRVLVLVPTRELGAQVYQVAKQLTQFTNVEVGIAIGGLDVKAQEAVLRT 329

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++DH  N     +++IEIL++DEADRMLD  F   ++ I      TRQT
Sbjct: 330 NPDIVIATPGRLIDHIKNTPSFSLDSIEILILDEADRMLDEYFAEQMKEIIRSCSATRQT 389

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+E++ ++   L+ P +I VN   + A  +   F+            +   L 
Sbjct: 390 MLFSATMTEEVKDLAAVSLKKPVKIFVNNNQTVAFNLRQEFIRVREGREADREPILAALV 449

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F   K+    L   L   G     +HG++ Q  R++ L  FK+  I ++V
Sbjct: 450 CRTFHDHCMVFVQTKRTAHRLRILLGLLGVKAGELHGDLTQAQRLESLKQFKDEQIDVLV 509

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  + + + +  I
Sbjct: 510 ATDVAARGLDISGVTTVINFVMPATLEHYIHRVGRTARAGRAGVSVSLAGELERRIVKDI 569

Query: 361 EK----------LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            K          +  + +D     +++L   ++K+ +A+    +      Q+ T  +R+ 
Sbjct: 570 VKNAVNPVKNRIIPGEIIDKYRAKVAALESEIDKV-LAEERAEKMLRQAEQQLTSTERKL 628

Query: 411 KNYSSQKSHIPLKE 424
           K  +  K+  P +E
Sbjct: 629 KGIAPHKTDGPPRE 642


>gi|302189857|ref|ZP_07266530.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. syringae
           642]
          Length = 459

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 135/377 (35%), Positives = 221/377 (58%), Gaps = 8/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++  N+ V  L GG+ F  Q   LE 
Sbjct: 66  INP---RFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F+++P+ ++V    + ++ IE  F     +   + A+++ L   
Sbjct: 183 LFSATYPVGIKQLSSKFMRDPQTVKVEALHADSQ-IEQIFYEISPEQRLE-AVVKVLGHF 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T  + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 241 RPT--SCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 299 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 358

Query: 362 KLIEKKVDWLNGDLSSL 378
           +L +  ++W   D  S+
Sbjct: 359 ELQKAPLNWQQYDRLSI 375


>gi|297621628|ref|YP_003709765.1| putative ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU
           86-1044]
 gi|297376929|gb|ADI38759.1| putative ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU
           86-1044]
          Length = 395

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/385 (34%), Positives = 218/385 (56%), Gaps = 12/385 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  L PK++ ++ +  Y++P+ IQ K IP +L + DV  +AQTG+GKTA+  +P+ 
Sbjct: 6   LTFNDFNLDPKIIESLREMKYLEPSEIQTKAIPEILNKRDVVALAQTGSGKTAACAIPLC 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++  +  ++    L++ PTRELA Q A   +K GK   +    + GG   + Q  K+ 
Sbjct: 66  HMVDTSKDAIQ---ALVIVPTRELALQYATETQKIGKKRGVHAFAIYGGEDADIQEAKIG 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               VLI TPGR++D     ++ ++ + IL +DEAD ML MGF   ++ I + +    Q 
Sbjct: 123 HRVHVLIATPGRLIDFIYSRRIDLSQVFILALDEADEMLSMGFYEDLEFIINCLVQEHQI 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+++++E  +++P  I +        +IEH F+  Y +  ++ A L QLL 
Sbjct: 183 LLFSATMPKEIRRIAEGHMKDPVDILLTQKKQGPSSIEHRFL--YCRPDQRDASLIQLLN 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +++ IIF   +  V +L  SL+K    V  +HG + Q  R  +   F+ G IQ +V
Sbjct: 241 ECQPVQS-IIFGRTRFQVESLAKSLQKSVKGVDFLHGALSQDVRRIVTRKFRGGKIQHLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD  +V HVF +++ +  + Y+HR GRTGR  + G   TLV K D+  +  +
Sbjct: 300 ATDVAARGLDFSEVSHVFMYEMSDDPDIYVHRSGRTGRFDKQGMVVTLVTKRDLGVLGKV 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKI 385
            K ++KK  W+       +PP E++
Sbjct: 360 LKFLKKKPQWIG------HPPPERV 378


>gi|322703781|gb|EFY95385.1| ATP-dependent RNA helicase ded-1 [Metarhizium anisopliae ARSEF 23]
          Length = 665

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 135/345 (39%), Positives = 196/345 (56%), Gaps = 21/345 (6%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--------------ILE 64
           A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+                +
Sbjct: 194 AHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFINGPSPVPANAAGQ 253

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
            GR R   P +LIL PTREL +Q+ D   K+     +   ++ GG    +Q +++ERG D
Sbjct: 254 FGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 313

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS---LVPFT-RQT 180
           +L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P I+ I     + P   RQT
Sbjct: 314 LLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPVADRQT 373

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT   ++Q ++ +FL++   + V    ST+E I    V       K+  LL  L  
Sbjct: 374 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQK-VEFVEDIDKRSVLLDILHT 432

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   +IF   K+   +L   L  Q F   +IHG+  QR R + L  F+ G   ++V
Sbjct: 433 HAGGLT--LIFVETKRMADSLSDFLINQSFPATSIHGDRTQRERERALEFFRNGRCPILV 490

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           A+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G A
Sbjct: 491 ATAVAARGLDIPNVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIA 535


>gi|326915068|ref|XP_003203843.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Meleagris
           gallopavo]
          Length = 369

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 203/368 (55%), Gaps = 11/368 (2%)

Query: 14  CAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMP 73
            A    G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  L+    +VR  
Sbjct: 9   AAAARGGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD---IQVRET 65

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           + LIL PTRELA Q+       G   N+     IGG       +KL+ G  V+  TPGR+
Sbjct: 66  QALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRV 125

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193
            D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L SAT+  E+ +
Sbjct: 126 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILE 185

Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLLQSQDTMKNGII 250
           ++  F+ +P RI V     T E I+  FVA   +   +   C L   L     T+   +I
Sbjct: 186 MTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL-----TITQAVI 240

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           FCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  ++++++D+ ARGLD
Sbjct: 241 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 300

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           +P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE+    ++D 
Sbjct: 301 VPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDE 360

Query: 371 LNGDLSSL 378
           +  +++ L
Sbjct: 361 MPMNVADL 368


>gi|241618030|ref|XP_002408280.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215502947|gb|EEC12441.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 1025

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 138/382 (36%), Positives = 216/382 (56%), Gaps = 7/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++A  G+S KV+  +   G+ KPTPIQ + IP V+   D+ GIA+TG+GKT +F+LPM  
Sbjct: 350 NWAQCGVSKKVMEVLKKHGFEKPTPIQAQAIPAVMSGRDLIGIAKTGSGKTLAFLLPMFR 409

Query: 62  -ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            IL++        P  +I+ PTRELA Q+  + +K+ K+ +L V  + GG     Q   L
Sbjct: 410 HILDQPPLEDDDGPIAVIMTPTRELAMQITKDCKKFTKSLSLRVVCVYGGTGISEQIADL 469

Query: 120 ERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D    N G++        +V+DEADRM DMGF P +  I   V  
Sbjct: 470 KRGAEIIVCTPGRMIDMLAANNGRVTNFRRTTYVVLDEADRMFDMGFEPQVMRIVDSVRP 529

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   L  P  I V   S   + +E   V    +  K   LL+
Sbjct: 530 DRQTVMFSATFPRQMEALARRILMKPIEILVGGRSVVCKEVEQHIVIINDE-DKFFKLLE 588

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L   QD   + I+F +++++   L   L K   +  A+HG IDQ  R   + +FK G +
Sbjct: 589 LLGLYQDK-GSAIVFVDKQEHADVLLKDLMKASHNAMALHGGIDQFDRDSTIVDFKAGKV 647

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  +  ++
Sbjct: 648 GVLIATSVAARGLDVKHLILVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITDDQGRY 707

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
              + K +E   + +  DL  L
Sbjct: 708 AADLSKALELSGNPVPEDLQRL 729


>gi|153947047|ref|YP_001401319.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis IP
           31758]
 gi|170024671|ref|YP_001721176.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis YPIII]
 gi|152958542|gb|ABS46003.1| ATP-independent RNA helicase DbpA [Yersinia pseudotuberculosis IP
           31758]
 gi|169751205|gb|ACA68723.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           YPIII]
          Length = 460

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 212/369 (57%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L  
Sbjct: 6   FSSLTLPAEQLSNLNELGYTEMTPVQAAVLPAILNGQDVRAKAKTGSGKTAAFGIGLLDK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           +  G     + + L+L PTRELA QV+    +  +   N+ +  L GG P   Q   L  
Sbjct: 66  IAVGEF---VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI +H  +  L+++ ++ LV+DEADRMLDMGF   I ++ +  P  RQTL
Sbjct: 123 APHIVVGTPGRIQEHLRKKTLVLDELKTLVLDEADRMLDMGFSDAIDDVIAYTPPQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S    + P  +EV   +     IE  F  T  +  K+  LL  +L S
Sbjct: 183 LFSATYPSGIEQISARVQRQPLNVEVGD-TDEEPAIEQVFFETTRE--KRLPLLISVL-S 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + ++FCN KK+  ++  SLE +G SV A+HG+++QR R ++L  F   + +++VA
Sbjct: 239 HYQPASCVVFCNTKKDCQSVYESLESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V NF++    E ++HRIGRTGRAG  G A +L   +++     IE
Sbjct: 299 TDVAARGLDIKDLELVINFELAFDPEIHVHRIGRTGRAGMSGLAVSLCTPQEMVRAHTIE 358

Query: 362 KLIEKKVDW 370
             ++ K+ W
Sbjct: 359 DYLQIKLKW 367


>gi|307208568|gb|EFN85902.1| Eukaryotic initiation factor 4A-III [Harpegnathos saltator]
          Length = 403

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 210/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L  
Sbjct: 32  FDSMGLRDELLRGIYAYGFEKPSAIQQRSIKPIMKGRDVIAQAQSGTGKTATFSIAILQS 91

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 92  LD---TQVRETQVLVLSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYG 148

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DE+D ML+ GF   I ++   +P   Q +L
Sbjct: 149 QHVVSGTPGRVFDMIKRRVLRTRAIKMLVLDESDEMLNKGFKEQIYDVYRYLPPATQVVL 208

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 209 VSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 267

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+VC++HG++ Q+ R  I+  F+ G  +++
Sbjct: 268 ----TITQAVIFCNTKRKVDWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRSGASRVL 323

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G +   V  +DI+ +  
Sbjct: 324 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVSINFVKTDDIRILRD 383

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 384 IEQYYSTQIDEMPMNVADL 402


>gi|221105444|ref|XP_002161749.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 1335

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 134/391 (34%), Positives = 215/391 (54%), Gaps = 18/391 (4%)

Query: 3    FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
            ++  G+S KV+  +    Y KPTPIQ + IP ++   D+ GIA+TG+GKT +F++P+   
Sbjct: 675  WSQAGVSTKVLAVLKKLKYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTLAFLIPLFRH 734

Query: 61   TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             I +        P  +I+ PTRELA Q+    +K+ K  NLT A + GG     Q  +L+
Sbjct: 735  VIDQPPLDENDGPIAIIMTPTRELALQIFREAKKFCKQLNLTAACIYGGSGISEQIAELK 794

Query: 121  RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +GA++++CTPGR++D    N G++        LV+DEADRM DMGF P +  I   +   
Sbjct: 795  KGAEIIVCTPGRMIDMLTANNGRVTNCRRCTYLVMDEADRMFDMGFEPQVMRILDNIRPD 854

Query: 178  RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALLQ 236
            RQT+LFSAT   +++ ++   L  P  ++V   S     +E H  V    +   K   L 
Sbjct: 855  RQTVLFSATFPRQMEAIARKVLNKPIEVQVGGRSVVCSDVEQHALVI---EEENKFFKLL 911

Query: 237  QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +LL       + ++F  ++++   L   L K  +   ++HG +DQ  R   +++FK G  
Sbjct: 912  ELLGVYQEKGSVLVFVEKQESADMLFKDLLKNAYPCLSLHGGMDQFDRDSTIADFKNGVT 971

Query: 297  QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +LMV++ +AARGLD+ ++  V N+D PN  E+Y+HR+GRTGRAG  G +FT +  E  ++
Sbjct: 972  KLMVSTSVAARGLDVKNLVLVLNYDCPNHYEDYVHRVGRTGRAGNKGTSFTFITPEQGRN 1031

Query: 357  IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
               I K  E         L+   PP + +++
Sbjct: 1032 AGDIIKAFE---------LAKCTPPTDVMEL 1053


>gi|28872121|ref|NP_794740.1| ATP-independent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|301384383|ref|ZP_07232801.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062325|ref|ZP_07253866.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           K40]
 gi|302132329|ref|ZP_07258319.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28855375|gb|AAO58435.1| ATP-independent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331014545|gb|EGH94601.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 459

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 135/377 (35%), Positives = 221/377 (58%), Gaps = 8/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++  N+ V  L GG+ F  Q   LE 
Sbjct: 66  INP---RFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQTPQRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F+++P+ ++V    + ++ IE  F     +   + A+++ L   
Sbjct: 183 LFSATYPVGIKQLSSKFMRDPQTVKVEALHADSQ-IEQIFYEISPEQRLE-AVVKVLGHF 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T  + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 241 RPT--SCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 299 TDVAARGLDIDALDMVLNVELARDSEIHIHRVGRTGRAGETGIAVSLVAPSESQRARAIE 358

Query: 362 KLIEKKVDWLNGDLSSL 378
           +L +  ++W   D  S+
Sbjct: 359 ELQKAPLNWQQYDSLSI 375


>gi|320166262|gb|EFW43161.1| ATP dependent RNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 633

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 135/360 (37%), Positives = 196/360 (54%), Gaps = 21/360 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+  +   V  A Y KPTP+Q   IP++  R D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 173 FRDASLADAIHSNVELASYHKPTPVQKHAIPIIHSRRDLMACAQTGSGKTAAFLLPILSN 232

Query: 63  LEKGRARV-----------RMPRT----LILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
           L K    V           R  +T    L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 233 LWKQGPAVPPPRPSGPGGYRRQKTHIEALVLAPTRELAVQIYEEARKFSYRSGIRACVVY 292

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + +ERG  +L+ TPGR++D   RGK+ ++N   +V+DEADRMLDMGF P I
Sbjct: 293 GGTDIGQQLRDIERGCQLLVATPGRLMDLLERGKISLDNCRYVVLDEADRMLDMGFEPQI 352

Query: 168 QNITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I           RQ L+FSAT   E+Q ++ +FL++   + V    ST+E I    + 
Sbjct: 353 REIVEKNDLPAMGERQMLMFSATFPKEIQALARDFLEDYLFLAVGRVGSTSENITQKLI- 411

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            +     K ++L  LL +       + F   K+   +L   L  +GF   +IHG+  QR 
Sbjct: 412 -WVDEHDKRSMLLDLLSAAGPECLTLCFVETKRAADSLEDFLYHEGFPAASIHGDRSQRE 470

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   + Y+HRIGRTGR G  G
Sbjct: 471 REDALRTFRSGHTPILVATAVAARGLDIPNVKHVINYDLPTEIDEYVHRIGRTGRVGNLG 530


>gi|189520693|ref|XP_001923830.1| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Danio rerio]
          Length = 671

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 205/374 (54%), Gaps = 11/374 (2%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEK 65
           V+  +L   + +PT IQ +  PL L   D+ GIAQTG+GKT +++LP +        LE+
Sbjct: 106 VMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER 165

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
           G      P  L+L PTRELA QV      YGK+  +    + GG P   Q + LERG ++
Sbjct: 166 GDG----PICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERGVEI 221

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
            I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL++SA
Sbjct: 222 CIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 281

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           T   E+++++E+FLQ+  +I +     +A       V    +  K   L+Q + +     
Sbjct: 282 TWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAEK 341

Query: 246 KN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
           +N  IIF   KK    L   + + G+    IHG+  Q  R  +L+ F+ G   +++A+D+
Sbjct: 342 ENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDV 401

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     +++    + +++
Sbjct: 402 ASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQARDLVRVL 461

Query: 365 EKKVDWLNGDLSSL 378
           E+    +N  L  L
Sbjct: 462 EEARQAINPKLLQL 475


>gi|45190521|ref|NP_984775.1| AEL086Wp [Ashbya gossypii ATCC 10895]
 gi|74693722|sp|Q757U8|DBP10_ASHGO RecName: Full=ATP-dependent RNA helicase DBP10
 gi|44983463|gb|AAS52599.1| AEL086Wp [Ashbya gossypii ATCC 10895]
          Length = 960

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 139/413 (33%), Positives = 223/413 (53%), Gaps = 48/413 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  GLS  ++  +   G+ +PTPIQ KTIPL+LQ+ D+ G+A+TG+GKTA+FVLP++  
Sbjct: 122 FASFGLSKFILGNISRKGFRQPTPIQRKTIPLILQQRDIVGMARTGSGKTAAFVLPLIEK 181

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A++   R +IL P+RELA Q    F+++ K  NL   LL GG   E Q   +   
Sbjct: 182 LKMHSAKI-GARAMILSPSRELAMQTHKVFKEFAKGSNLRSVLLTGGDGLEDQFSMMMSN 240

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV+I TPGR L       L +++IE +V DEADR+ +MGF   +  +   +P  RQTLL
Sbjct: 241 PDVIIATPGRFLHLKVEMNLDLHSIEYVVFDEADRLFEMGFQEQLNELLGSLPTARQTLL 300

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--------------------- 221
           FSAT+   L   ++  L NP  + ++T +  +E +E  F                     
Sbjct: 301 FSATLPSSLVDFAKAGLTNPVLVRLDTETKVSENLEMLFLSVKNDEREANLLYLLQEVIK 360

Query: 222 --VATYAQYSK----------------------KCALLQQLLQSQD--TMKNGIIFCNQK 255
             VAT  Q  +                           Q L  ++D  +  + IIF + +
Sbjct: 361 IPVATEEQLQRFRKQSNDDADDSDDETDKKKKHSKKSKQPLPSAKDMPSPNSTIIFVSTR 420

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
            +V  + + L+  G+ V  ++G +DQ +R + L NF+ G   ++V +D+AARG+DIP + 
Sbjct: 421 HHVEYVSNLLKDCGYLVSYLYGTLDQHARRQQLHNFRCGLTNILVVTDVAARGVDIPLLA 480

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           +V N  +P  ++ ++HR+GRT RAG  G A+T++++ ++ ++  +E  + KKV
Sbjct: 481 NVVNMSLPASSKIFVHRVGRTARAGNKGWAYTILSESELPYLLDLELFLGKKV 533


>gi|312212697|emb|CBX92780.1| similar to ATP-dependent RNA helicase dbp10 [Leptosphaeria
           maculans]
          Length = 894

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/402 (33%), Positives = 218/402 (54%), Gaps = 38/402 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ K +PL+LQ  DV G+A+TG+GKTA+FV+PM+  
Sbjct: 80  FQAMGLNALLLKAIAQKGFKIPTPIQRKAVPLMLQGDDVVGMARTGSGKTAAFVIPMIQK 139

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+V   R +I+ P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 140 LKAHSAKV-GARGIIMSPSRELALQTLKVVKELGRGTDLRTILLVGGDSLEEQFSSMTTN 198

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++++ +V DEADR+ +MGF   +  I   +P  RQTLL
Sbjct: 199 PDIIIATPGRFLHLKVEMGLDLSSVKYIVFDEADRLFEMGFAAQLSEILHALPTNRQTLL 258

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
           FSAT+   L + +   LQ PK I ++  S  +  ++  +  T     +  ALL  L    
Sbjct: 259 FSATLPKSLVEFARAGLQEPKLIRLDAESKISPDLKSAYF-TIKSGDRDGALLHLLDNVI 317

Query: 239 --------------LQSQDTMKN------------------GIIFCNQKKNVVNLCHSLE 266
                         + S+    N                   IIF   K  V  L + L 
Sbjct: 318 KVPVGETEAAKKARVDSEKATTNKKRKRSDGFVKDAPIAESTIIFAATKHRVEYLANLLR 377

Query: 267 KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
             G++V  ++GN+DQ +R + + +F+ G  +++V +D+AARG+D+P + HV N+D P++ 
Sbjct: 378 ATGYAVSYVYGNLDQTARKEQIQDFRTGLTRILVVTDVAARGVDMPHINHVINYDFPSQP 437

Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           + ++HR+GRT RAGR G A++L    D+ ++  ++  + K++
Sbjct: 438 KIFVHRVGRTARAGRKGWAYSLCRHVDLPYLIDLQLFLGKRL 479


>gi|209809436|ref|YP_002264974.1| ATP-dependent RNA helicase [Aliivibrio salmonicida LFI1238]
 gi|208010998|emb|CAQ81411.1| ATP-dependent RNA helicase [Aliivibrio salmonicida LFI1238]
          Length = 450

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 136/388 (35%), Positives = 209/388 (53%), Gaps = 10/388 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +      KPT IQ K +P+ +   DV   ++TG+GKT +FVLPML
Sbjct: 6   LQFKDLGLDNRLLKNLAHQNIKKPTEIQRKAVPVAMAGKDVLASSKTGSGKTLAFVLPML 65

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L+        PR +IL PTRELA QV  +            AL+ GG  F  Q   L
Sbjct: 66  HKSLKSKSFSKNDPRAVILAPTRELAKQVYMHLRAMLGGLTYDAALITGGENFNDQVNAL 125

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            +    ++ TPGR+ DH     L +N +E+L++DEADRMLD+GF  ++Q I +     R 
Sbjct: 126 RKFPKFIVATPGRLADHLEHQSLFLNGLEMLILDEADRMLDLGFAEHLQKIHAAANHRRR 185

Query: 179 QTLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+FSAT+  E + K + N L NPK + V   +     I   F         K ALL +
Sbjct: 186 QTLMFSATLDHEAVTKFAGNMLDNPKVVSVGLSTDQHADITQSFYLC-DHLDHKQALLDK 244

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++++   +  +IF   + +   L   L ++     A+ G+++Q +R  I+S F+    +
Sbjct: 245 IIETEKYFQI-MIFTATRADTDRLTDLLNERKLKAVALSGDMNQTARNNIMSQFERRAHK 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLD+  V HV NFD+P   E Y+HR+GRTGRAG+ G A +LV  +D +  
Sbjct: 304 ILVTTDVASRGLDLTSVTHVINFDMPKHMEEYVHRVGRTGRAGKKGTAISLVGPKDWESF 363

Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNP 380
             IE  +++ + +     L G    L P
Sbjct: 364 KRIETFLQQDLAFSEFEDLKGKFKGLKP 391


>gi|218777997|ref|YP_002429315.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759381|gb|ACL01847.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 567

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 126/364 (34%), Positives = 210/364 (57%), Gaps = 8/364 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59
           MDF  LGLS ++  AV   G+ KPTPIQ K IP +++   D  G+AQTGTGKT ++ LP+
Sbjct: 1   MDFRILGLSDELARAVESLGFEKPTPIQEKAIPYLIEGERDFVGLAQTGTGKTGAYGLPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
           +  ++    R   P+ +++ PTREL  Q+A +   + K   ++ VA + GG     Q + 
Sbjct: 61  IQSIDLSIPR---PQAIVICPTRELCLQIAGDLRDFAKYMEDIRVAAVYGGADIVKQIRT 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++ GA ++  TPGR+LD  NR  +   ++  +V+DEAD ML+MGF   I  I S +P  R
Sbjct: 118 VKGGAQIIAATPGRLLDLINRKAIKPGHVTRVVLDEADEMLNMGFQEDINAILSSLPDER 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +T LFSATM   +  ++  +  NP  + +   +  +  I H     +A+   + A L+++
Sbjct: 178 RTWLFSATMPKGVAAIAAKYQTNPVEVTMGGRNQASPDISHICYMIHAK--NRYAALKRI 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L     M  G++FC  +K+   +  +L   G++  A+HG++ Q  R +++  F+   +Q+
Sbjct: 236 LDYCPDM-FGLVFCRTRKDTQEIAEALMADGYNADALHGDLSQPQRDQVMGRFRRKAVQV 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+AARGLD+ D+ HV ++ +P+  E Y HR GRT RAG+ GK+  L+   +   + 
Sbjct: 295 LAATDVAARGLDVDDISHVIHYVLPDDPEAYTHRSGRTARAGKQGKSIALITPRENYRLK 354

Query: 359 AIEK 362
            +E+
Sbjct: 355 DLER 358


>gi|218188023|gb|EEC70450.1| hypothetical protein OsI_01481 [Oryza sativa Indica Group]
          Length = 512

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/358 (37%), Positives = 200/358 (55%), Gaps = 10/358 (2%)

Query: 3   FADLGLSPKVV-CAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA   L P+V+ C     G+ +P+PIQ    P +L   D  GIA TG+GKT +F +P L 
Sbjct: 96  FAATALPPQVLDCC---KGFERPSPIQAYAWPYLLDGRDFIGIAATGSGKTIAFGVPALM 152

Query: 62  ILEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            + +      A+  +PR L+L PTRELA Q+AD   + G    ++   L GG     Q  
Sbjct: 153 HVRRKMGEKSAKKGVPRVLVLSPTRELAQQIADVLCEAGAPCGISSVCLYGGTSKGPQIS 212

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G D++I TPGR+ D    G   +N++  +V+DEADRMLDMGF P ++ I S     
Sbjct: 213 ALKSGVDIVIGTPGRMKDLIEMGICRLNDVSFVVLDEADRMLDMGFEPEVRAILSQTASV 272

Query: 178 RQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           RQ ++FSAT    + ++++ F+  NP ++ + +    A       V      S+   L+ 
Sbjct: 273 RQMVMFSATWPPAVHQLAQEFMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRSRDSRLVA 332

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L +     +N + +F   K+    +   L+++G+S  ++HG+  Q  R K LS FKEG+
Sbjct: 333 LLDKYHKAQRNRVLVFVLYKREATRVETMLQRRGWSAVSVHGDKAQHDRTKALSLFKEGS 392

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             LM+A+D+A+RGLDIPDV  V N+  P   E+Y+HRIGRTGRAG+ G A T   +E+
Sbjct: 393 CPLMIATDVASRGLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTFFTQEN 450


>gi|327296165|ref|XP_003232777.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Trichophyton
           rubrum CBS 118892]
 gi|326465088|gb|EGD90541.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Trichophyton
           rubrum CBS 118892]
          Length = 811

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 211/386 (54%), Gaps = 39/386 (10%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +++ GL PK +  ++D+ GY  P+PIQ  +IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 370 WSESGL-PKRLLEIIDSVGYKDPSPIQRVSIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 428

Query: 62  IL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +       E    R   P  +IL PTRELA Q+     K+    N  V  ++GG   E 
Sbjct: 429 YISSLPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEE 488

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 489 QAYNLRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 548

Query: 175 PFT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNT 209
           P +                         RQT++++ATM   +++++  +L+ P  + +  
Sbjct: 549 PVSNEKPDSEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 608

Query: 210 PSSTAETIEHC--FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
                +T+E    FV+   +  K+ A   ++L S++     I+F N K+N   +   ++ 
Sbjct: 609 IGEAVDTVEQRVEFVSGEDKRKKRLA---EILTSREYRPPIIVFVNIKRNCDAVARDIKH 665

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            GFS   +HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++    E
Sbjct: 666 MGFSAVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIE 725

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKED 353
           +Y HRIGRTGRAG+ G A T +  ED
Sbjct: 726 SYTHRIGRTGRAGKSGIAITFLGSED 751


>gi|221108213|ref|XP_002168355.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 480

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 153/413 (37%), Positives = 224/413 (54%), Gaps = 15/413 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   +    L+ G  KPT IQ+  IP +L   D  G A+TG+GKTA+F LP++  
Sbjct: 5   FTDLGLHEWLNKQCLEMGISKPTEIQVSCIPEILSGRDCIGSAKTGSGKTAAFALPIIQK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     LIL PTRELA Q+AD F+  GK+  L  A++IGG+    Q  +L   
Sbjct: 65  LSEDPYGIF---ALILTPTRELAIQIADQFKALGKSIGLNDAVIIGGLDMVKQGMELSNQ 121

Query: 123 ADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             V+I TPGR+  H   G K  +N I+ LV+DEADR+L+  F   ++ I   +   RQTL
Sbjct: 122 PHVVIATPGRLASHITSGTKFSLNKIKFLVLDEADRLLEKSFENDLEVIFDNIAKKRQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQLL 239
           LFSAT+TD +  + E    NP   EV +    +T   ++  ++   +Q  K C L+  LL
Sbjct: 182 LFSATITDAINHLKE-VAHNPFCYEVKSEDDFATVTELDQRYLLIPSQV-KDCYLVH-LL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q+  + K+ IIF    ++   +   L K  F    +H  + QR R+  L  F+ G ++++
Sbjct: 239 QNF-SEKSVIIFTQTCRSCQVISFMLRKVEFKCAGLHSVMSQRERLSSLGRFRSGHVKIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDIP V  V N++VP   ++Y+HR+GRT RAGR G + TL+ + DI  + A
Sbjct: 298 VATDVASRGLDIPLVQLVINYNVPASPKDYVHRVGRTARAGRGGMSLTLLTQFDIDRLKA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           IE  I  K+     +       L+ I I      R+   I      F  +KKN
Sbjct: 358 IETFIGLKMKEFETNEDDAVKLLKPISI-----IRREVEIRLNDANFGEKKKN 405


>gi|324502886|gb|ADY41264.1| ATP-dependent RNA helicase DDX46 [Ascaris suum]
          Length = 784

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 131/352 (37%), Positives = 201/352 (57%), Gaps = 7/352 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G+  K++  +    Y KPT IQ + IP ++   DV GIA+TG+GKT +F+LPM   
Sbjct: 126 WAQCGVEWKILNTLKKLEYTKPTAIQAQAIPAIMSGRDVIGIAKTGSGKTLAFLLPMFRH 185

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++     +  P  +I+ PTRELA Q      K+ K  N+ VA + GG+    Q   L+
Sbjct: 186 IMDQPELEELDGPIAVIMSPTRELAMQTWKEANKFAKPLNIRVACVYGGVGISDQIGDLK 245

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA+V++CT GR+ D    N+GK+  +  +  LV+DEADRM DMGF P +  I + +   
Sbjct: 246 RGAEVIVCTVGRLTDMLAANKGKVTNLRRVTYLVLDEADRMFDMGFEPQVMKIVNNIRPD 305

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT   +++ ++   L  P  I V   S   + +    V    ++ K   LL+ 
Sbjct: 306 RQTVLFSATFPRQMEALARKILDKPVEILVGGKSVVCDDVSQN-VVILEEHQKMLKLLE- 363

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL       N ++F ++++    L   L + G++   +HG IDQ  R   + +FK   I+
Sbjct: 364 LLGVYWEHGNVLVFVDKQEKADELVAQLMRSGYNCAPLHGGIDQFDRDSTILDFKAAKIK 423

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           L+VA+ +AARGLD+  +  V N+D PN  E+Y+HR+GRTGRAG  G A+T +
Sbjct: 424 LLVATSVAARGLDVKKLILVVNYDCPNHYEDYVHRVGRTGRAGNKGYAYTFI 475


>gi|330961130|gb|EGH61390.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 459

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 134/373 (35%), Positives = 219/373 (58%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++  N+ V  L GG+ F  Q   LE 
Sbjct: 66  INP---RFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQTPQRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F+++P+ ++V    + ++ IE  F     +   + A+++ L   
Sbjct: 183 LFSATYPVGIKQLSSKFMRDPQTVKVEALHADSQ-IEQIFYEISPEQRLE-AVVKVLGHF 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T  + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 241 RPT--SCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 299 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 358

Query: 362 KLIEKKVDWLNGD 374
           +L +  ++W   D
Sbjct: 359 ELQKAPLNWQQYD 371


>gi|313205893|ref|YP_004045070.1| dead/deah box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|312445209|gb|ADQ81564.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|315022205|gb|EFT35233.1| ATP-dependent RNA helicase [Riemerella anatipestifer RA-YM]
 gi|325336667|gb|ADZ12941.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
           RA-GD]
          Length = 449

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 211/371 (56%), Gaps = 10/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  L  K++  + D    +PTPIQ K+   +L   D+ GIAQTGTGKT +++LP+L  
Sbjct: 5   FADFELPEKILDILADLELFEPTPIQQKSFKPILSGRDIMGIAQTGTGKTLAYLLPVLKN 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +  ++    P  L+L PTREL  QVA+  EK  +  +  +  + GG     Q    + G
Sbjct: 65  WKYNKSG--NPTVLVLVPTRELVVQVAEILEKLCEKLSTRIIGVYGGKNINTQKLLFDNG 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR++D      + +  ++ L+IDE D ML++GF P + +I  ++   RQ +L
Sbjct: 123 CDILVGTPGRVMDLAIDNAISLKEVQKLIIDEFDEMLNLGFRPQLTHIFEMMREKRQNIL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQS 241
           FSATMTD + ++ + +  NP  I +    +  E I+   F  T   ++ K   LQ LL  
Sbjct: 183 FSATMTDAVDEMLDEYFANPIEISLAKSGTPLEKIQQIAFKVT--NFNTKINFLQHLLDK 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEK---QGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +M   +IFCN KK+   L   +++   + F V  IH N  Q  R++ +  F++  ++ 
Sbjct: 241 DKSMSKVLIFCNNKKHADYLFTKIDEIYPESFDV--IHSNKSQNYRLRAMKKFEQEEVRG 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +D+ ARGLDI D+ HV NF++P+  E YIHRIGRTGRA + G A + + +++     
Sbjct: 299 LITTDVMARGLDISDISHVINFEIPDIPEQYIHRIGRTGRADKDGIALSFITEKEEALFL 358

Query: 359 AIEKLIEKKVD 369
            IE L++K+V+
Sbjct: 359 DIEILMKKEVE 369


>gi|325120651|emb|CBZ56206.1| DEAD-box ATP-dependent RNA helicase 34, related [Neospora caninum
           Liverpool]
          Length = 411

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 127/363 (34%), Positives = 203/363 (55%), Gaps = 11/363 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L+  ++  +   G+ KP+ IQ + I  +L RHD  G AQ+GTGKTA+F +  L +
Sbjct: 40  FDALKLNESLLRGIYSYGFEKPSAIQQRGIKPILDRHDTIGQAQSGTGKTATFAIAALQL 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     +   + LIL PTRELA Q+       G    +     +GG        KL+ G
Sbjct: 100 IDYN---INNCQVLILAPTRELAQQIQKVVLALGDYLQVRCHACVGGTVVRDDIAKLKAG 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ D   +  L ++++++ ++DEAD ML  GF   I ++   +P   Q  L
Sbjct: 157 VHMVVGTPGRVHDMMEKRHLRVDDMKLFIMDEADEMLSRGFKSQIYDVFKKLPPDVQVAL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  ++ +++  F+++PKRI V     T E I   +VA   +  K    C L + L 
Sbjct: 217 FSATMPQDILELTTKFMRDPKRILVKNDELTLEGIRQFYVAVEKEDWKLETLCDLYETL- 275

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   II+CN ++ V  L   + ++ F+V ++HG++DQ+SR  I+  F+ G+ +++
Sbjct: 276 ----TITQAIIYCNTRRKVDFLTSKMSERDFTVSSMHGDMDQKSREMIMREFRSGSTRVL 331

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V   D++ +  
Sbjct: 332 ITTDLLARGIDVQQVSLVINYDLPATKENYIHRIGRSGRFGRKGVAINFVTSSDVEQLKE 391

Query: 360 IEK 362
           IEK
Sbjct: 392 IEK 394


>gi|282891599|ref|ZP_06300090.1| hypothetical protein pah_c180o092 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498567|gb|EFB40895.1| hypothetical protein pah_c180o092 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 399

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 127/370 (34%), Positives = 216/370 (58%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL P ++ A+    + +P+PIQ   IPL+LQ+ D+  +A+TG+GKTA+  +P+   
Sbjct: 4   FLDFGLDPTILKALEKLKFSEPSPIQKAAIPLILQKKDLIALAKTGSGKTAACAIPICDR 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     V+    LI+ PTRELA Q A   +K G    +    L GG     Q  KL+ G
Sbjct: 64  VDVNSNSVQ---ALIVVPTRELALQYATETQKIGAEKGVKTFALFGGEDAAMQQSKLKHG 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             VL+ TPGR++D     ++ ++++E L++DEAD ML MGF   ++ I   +    QTLL
Sbjct: 121 VQVLVVTPGRLIDFVYSRQIDLSHVETLILDEADEMLSMGFYDDLEFIIQCLVHEHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  +++ +++  +Q+P  + +    +T + IEH F+  Y +Y +K   L +L+++Q
Sbjct: 181 FSATMPKQIRDIAKKHMQSPLEVSLIGEDATPDMIEHHFL--YCRYHEKEHNLIELIKTQ 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGF-SVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              K  IIFC+ ++    + + L KQ   ++  +H  + Q  R  + + F+   IQL+VA
Sbjct: 239 TPTK-AIIFCSSRQECEKVTYVLRKQLHETIDFLHAGLSQDIRSAVTNKFRTNKIQLLVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ +RGLD   V HVF + + +  + YIHR GRTGR  + G   TLV + +++ ++ + 
Sbjct: 298 TDVVSRGLDFSSVSHVFIYHLADDLDLYIHRSGRTGRYEKAGTVITLVTQRELRTLNRLL 357

Query: 362 KLIEKKVDWL 371
           K+++K+ +W+
Sbjct: 358 KVLKKEPNWI 367


>gi|73969113|ref|XP_860733.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 12 [Canis
           familiaris]
          Length = 656

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 213/387 (55%), Gaps = 26/387 (6%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 100 PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 159

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 160 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQ 237
           +SAT   E+++++E+FL++  +I V     +A     + ++ C  +   +  K   L+++
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESE--KDHKLIQLMEE 333

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   
Sbjct: 334 IMAEKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAP 391

Query: 298 LMVASDLAARGLD------IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +++A+D+A+RGL       + DV  V N+D PN +E+Y+HRIGRT R+   G A+T    
Sbjct: 392 ILIATDVASRGLGFCIYVYVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTP 451

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            ++K    + K++E+    +N  L  L
Sbjct: 452 GNLKQARELIKVLEEANQAINPKLMQL 478


>gi|330040429|ref|XP_003239908.1| DEAD box protein [Cryptomonas paramecium]
 gi|327206834|gb|AEA39010.1| DEAD box protein [Cryptomonas paramecium]
          Length = 396

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/381 (34%), Positives = 213/381 (55%), Gaps = 15/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+  ++V      G+   T IQ KTIP  L+  D+ G AQTG+GKT +FV+P+L  
Sbjct: 4   FKHLGVCEQIVRICDSVGFKYATKIQAKTIPYALKNRDILGYAQTGSGKTLAFVIPILQS 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K +       + ++ P+RELA QVA   E  G  + + + LL  GI +  Q   ++R 
Sbjct: 64  LLKFQITFY---SFVIVPSRELAFQVASYIETIGYLFGIKIGLLTSGIEYATQISIIKRS 120

Query: 123 ADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRML----DMGFIPYIQNITSLVPFT 177
             ++ICTPGR++++  +   L + NI+ +V DEADR+     D  F+  ++N+    P  
Sbjct: 121 PHMMICTPGRLIEYTEKTDNLFLKNIKKIVFDEADRLFQNDFDKKFLSVVENL----PKF 176

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +Q+ LFSATMT  ++K+ +  + NP +I++N    T  T+   ++    + SK C L   
Sbjct: 177 KQSFLFSATMTINIEKLKKISMSNPVKIKINKKYKTVSTLVQNYIFMPFK-SKNCYLSYI 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             +  D +   IIF + +     +   L+   F V   HG + Q  R KIL +FK   I+
Sbjct: 236 CNEFSDCL--AIIFVDTQICAEKIAVLLKVLNFKVAYFHGKLSQDKRAKILHDFKLKKIK 293

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V++DLA+RG+DIPD+  + N+D+P    +YIHRIGRT RAG+ G+   LV + DI   
Sbjct: 294 ILVSTDLASRGIDIPDIELIINYDIPLYTRDYIHRIGRTARAGKTGRVINLVTQYDISSY 353

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             IE L+++K++    +L  +
Sbjct: 354 QKIEILLQRKLEEFKCNLKDI 374


>gi|240274680|gb|EER38196.1| ATP-dependent RNA helicase drs1 [Ajellomyces capsulatus H143]
          Length = 828

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 137/361 (37%), Positives = 201/361 (55%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L  
Sbjct: 306 FQAFSLSRPILRGLTFVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILER 365

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R +IL PTRELA Q  +   K     ++T   L+GG     Q   L++ 
Sbjct: 366 LLYRPRKVPTSRVVILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKR 425

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 426 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTM 485

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMT+ + K+    L  P R+ V+    T  T+   FV     +  K+   L  L +
Sbjct: 486 LFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLIQEFVRLRPGREEKRLGYLIVLCK 545

Query: 241 S--QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +D +   I+F   KK    +       G  V  +HG++ Q  R+K +  F++G +  
Sbjct: 546 NIYKDRV---IVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRIKSVEGFRDGKVSF 602

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A TL A+ D K + 
Sbjct: 603 LLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVK 662

Query: 359 A 359
           A
Sbjct: 663 A 663


>gi|227114116|ref|ZP_03827772.1| ATP-dependent RNA helicase DbpA [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 460

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 132/373 (35%), Positives = 214/373 (57%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L  + +  + + GY   TP+Q  T+P VL   DV   A+TG+GKTA+F    + +
Sbjct: 6   FSSLALPAEQLSNLNELGYTDMTPVQAATLPAVLSGADVRAKAKTGSGKTAAF---GIGL 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L++        + L+L PTRELA QV+    +  +   N+ +  L GG P   Q   L  
Sbjct: 63  LDRIVVSDFTTQALVLCPTRELADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSLVH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI DH  +  L ++++++LV+DEADRMLDMGF   I ++ S  P  RQTL
Sbjct: 123 APHIVVGTPGRIQDHLRKQSLSLDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  +E++++S    + P+R E+         IE  F  T     ++  LL  +L  
Sbjct: 183 LFSATYPEEIEQISARVQRQPQRFEI-ADGVEESAIEQRFYETTK--DQRLPLLIAILGH 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + ++FCN K++  ++  +L+ +G SV A+HG+++QR R ++L  F   + +++VA
Sbjct: 240 YQP-SSCVVFCNTKRDCQSVFDALDMRGISVSALHGDLEQRDRDQVLVRFANRSCRVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++  V NF++    E ++HRIGRTGRAG  G A +L   +++   + IE
Sbjct: 299 TDVAARGLDIKELELVVNFELAFDPEVHVHRIGRTGRAGTKGLAVSLCTPQEMNRANLIE 358

Query: 362 KLIEKKVDWLNGD 374
             +  ++ W + D
Sbjct: 359 DYLGMRIKWTSAD 371


>gi|85118552|ref|XP_965469.1| hypothetical protein NCU02696 [Neurospora crassa OR74A]
 gi|74662807|sp|Q7SH33|PRP5_NEUCR RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp-5
 gi|28927278|gb|EAA36233.1| hypothetical protein NCU02696 [Neurospora crassa OR74A]
 gi|38567223|emb|CAE76515.1| related to RNA helicase [Neurospora crassa]
          Length = 1194

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 213/376 (56%), Gaps = 18/376 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL+  ++  +   G+ KPTPIQ++ +P+++   DV G+A+TG+GKT +F LPML  
Sbjct: 563 WSQCGLTRPILDTIESLGFEKPTPIQMQALPVIMSGRDVIGVAKTGSGKTMAFALPMLRH 622

Query: 63  LEKGRARVRMPRT-------LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           ++      + P T       LI+ PTREL  Q+  + + + K   L V    GG   + Q
Sbjct: 623 VKD-----QDPVTGDDGAIALIMTPTRELCTQIYSDLQPFAKALKLRVVAAYGGNAIKDQ 677

Query: 116 NKKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITS 172
             +L+RGA++++ TPGR++D    N G++  +     LV+DEADRM DMGF P +  I +
Sbjct: 678 IAELKRGAEIIVATPGRLIDLLAANGGRVTNLKRATYLVLDEADRMFDMGFEPQVMKIFN 737

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSK 230
            V   RQT+LFSATM   +  +++  L++P  I V   S  A  I      +    ++++
Sbjct: 738 NVRPDRQTILFSATMPRIIDALTKKVLRDPVEITVGGRSVVAPEITQIVEVMDEGKKFNR 797

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
              LL +L    D +++ +IF  +++   +L   L ++G+   +IHG  DQ  R   +S+
Sbjct: 798 LLELLGELYADDDDVRS-LIFVERQEKADDLLRELLRRGYGCMSIHGGKDQEDRNSTISD 856

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK+G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + 
Sbjct: 857 FKKGVCPILIATSIAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFIT 916

Query: 351 KEDIKHIDAIEKLIEK 366
           +E       I K +E+
Sbjct: 917 EEQENCASGIAKALEQ 932


>gi|260942725|ref|XP_002615661.1| hypothetical protein CLUG_04543 [Clavispora lusitaniae ATCC 42720]
 gi|238850951|gb|EEQ40415.1| hypothetical protein CLUG_04543 [Clavispora lusitaniae ATCC 42720]
          Length = 955

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 132/417 (31%), Positives = 223/417 (53%), Gaps = 52/417 (12%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  GLS  ++  +   GY +PTPIQ KTIPL+++  DV G+A+TG+GKTA+FVLP++  
Sbjct: 120 FASFGLSKFILSNIAKKGYRQPTPIQRKTIPLIMENRDVVGMARTGSGKTAAFVLPVIEK 179

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+V   R++IL P+RELA Q     +++ K  +L   +LIGG   E Q   +   
Sbjct: 180 LKSHSAKV-GARSVILSPSRELALQTFKQVKEFSKGTDLRSVVLIGGDSLEEQFSSMMSN 238

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR L      +L ++ +E +V DEADR+ +MGF   +  + +++P +RQ+LL
Sbjct: 239 PDIIVATPGRFLHLQVEMQLDLSTVEYIVFDEADRLFEMGFAEQLNELLAILPTSRQSLL 298

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT------------------ 224
           FSAT+   L   ++  L NP  + ++  S  ++ ++  F +T                  
Sbjct: 299 FSATLPRSLIDFAKAGLSNPVLVRLDAESKISDLLQMAFFSTKKAEREASLLCIISDVIK 358

Query: 225 --------YAQYSKKCALLQQLLQSQDTMKNG-------------------------IIF 251
                    A+  ++     +L   +D    G                         I+F
Sbjct: 359 MPLATQEEIAKIKRESKKADELSDDEDEKPEGDKKKRKKFKKERLPPANVLPSPHSTIVF 418

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
              K +V  +   L   G+ V  I+G++DQR+R + L  F+ G   L+V +D+AARG+DI
Sbjct: 419 VPTKHHVEYVTGLLRDAGYLVSYIYGSLDQRARKEQLYRFRIGLTTLLVVTDVAARGIDI 478

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           P + +V N+ +P  ++ +IHR+GRT RAG  G A+++V ++++ ++  +E  + KK+
Sbjct: 479 PILANVVNYTLPASSKIFIHRVGRTARAGNKGWAYSIVNEQELPYLLDLELFLGKKI 535


>gi|125587400|gb|EAZ28064.1| hypothetical protein OsJ_12029 [Oryza sativa Japonica Group]
          Length = 472

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 136/376 (36%), Positives = 216/376 (57%), Gaps = 16/376 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+ P++V A    G+ +PT IQ + IP  L+  D+ G+ QTG+GKT +F LP++  
Sbjct: 43  FAELGVVPELVAACDAMGWKEPTRIQAEAIPHALEGRDLIGLGQTGSGKTGAFGLPIIQA 102

Query: 63  LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L K       P+ L   +L PTRELA Q+   FE  G    L+  +L+GG+    Q   L
Sbjct: 103 LLKQDK----PQALFACVLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVDRVQQAVSL 158

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +++ TPGR+LDH    K   +N ++ LV+DEAD++L++ F   + +I +++P  R
Sbjct: 159 AKRPHIVVGTPGRLLDHLTDTKGFSLNKLKYLVLDEADKLLNVEFQKALDDILNVIPKER 218

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +T LFSATMT+++ K+    L+NP ++EV +  ST +T+   F    A Y K C L+  L
Sbjct: 219 RTFLFSATMTNKVSKLQRACLRNPVKVEVASKYSTVDTLRQEFYFVPADY-KDCFLVHVL 277

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +   +M   +IF    ++   L  +L    F   +I G + Q  R+  L+ FK     +
Sbjct: 278 NELPGSMI--MIFVRTCESTRLLALTLRNLRFKAISISGQMSQDKRLGALNRFKTKDCNI 335

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +D+A+RGLDI  V  V N+D+P  +++Y+HR+GRT RAG  G A +LV + +     
Sbjct: 336 LICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLVNQYEAMWFK 395

Query: 359 AIEKLI-----EKKVD 369
            IEKL+     ++KVD
Sbjct: 396 MIEKLLGYEIPDRKVD 411


>gi|323448910|gb|EGB04803.1| hypothetical protein AURANDRAFT_59462 [Aureococcus anophagefferens]
          Length = 469

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 139/374 (37%), Positives = 205/374 (54%), Gaps = 26/374 (6%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL------------EKG-- 66
           Y +PTP+Q  ++P+ L   D+   AQTG+GKT  F+ P+L  L            ++G  
Sbjct: 31  YTRPTPVQKYSLPMGLAGRDMMACAQTGSGKTGGFLFPVLVALLRDGAAPADPNEQRGNS 90

Query: 67  -RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
            R R R P  LIL PTREL +Q+ D   K+     +   +  GG     Q ++LERG D+
Sbjct: 91  RRQRAR-PNGLILAPTRELVSQIFDEARKFCYCTGVRPVVCYGGAETRGQLQELERGCDL 149

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--VPFT--RQTL 181
           L+ TPGR++D   RG++ ++    LV+DEADRMLDMGF P I+ I     +P T  RQT 
Sbjct: 150 LLATPGRLVDFLERGRVTLSACRFLVLDEADRMLDMGFEPQIRRIVCQEDMPQTGARQTF 209

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT   E+Q ++ +FL N   + V    S  + +   F   +     K   L + + S
Sbjct: 210 MFSATFPREMQILAGDFLDNYIFLTVGRVGSACKDVTQRF--QFVDGRDKPDALMRYISS 267

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     +IF   K++   L  +L ++GF   +IHG+  QR R   L  FK G   ++V 
Sbjct: 268 LEESGLTLIFVETKRDADYLEDTLCREGFPASSIHGDKTQRDRELALREFKSGRTPILVG 327

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI-DAI 360
           +D+AARGLDIP+V HV NFD+P    +Y+HRIGRTGRAG  G A + +  ++   + + I
Sbjct: 328 TDVAARGLDIPNVLHVVNFDLPRAVSDYVHRIGRTGRAGNTGYAMSFLCDKNRNIVRELI 387

Query: 361 EKLIEKKVD---WL 371
           + L+E   D   W+
Sbjct: 388 DLLVENGQDVPSWM 401


>gi|322696164|gb|EFY87960.1| ATP-dependent RNA helicase DED1 [Metarhizium acridum CQMa 102]
          Length = 666

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 135/345 (39%), Positives = 196/345 (56%), Gaps = 21/345 (6%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--------------ILE 64
           A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+                +
Sbjct: 200 AHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFINGPSPVPANAAGQ 259

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
            GR R   P +LIL PTREL +Q+ D   K+     +   ++ GG    +Q +++ERG D
Sbjct: 260 FGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 319

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS---LVPFT-RQT 180
           +L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P I+ I     + P   RQT
Sbjct: 320 LLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPVADRQT 379

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT   ++Q ++ +FL++   + V    ST+E I    V       K+  LL  L  
Sbjct: 380 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQK-VEFVEDIDKRSVLLDILHT 438

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   +IF   K+   +L   L  Q F   +IHG+  QR R + L  F+ G   ++V
Sbjct: 439 HAGGLT--LIFVETKRMADSLSDFLINQSFPATSIHGDRTQRERERALEFFRNGRCPILV 496

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           A+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G A
Sbjct: 497 ATAVAARGLDIPNVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIA 541


>gi|312375424|gb|EFR22803.1| hypothetical protein AND_14200 [Anopheles darlingi]
          Length = 971

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 135/370 (36%), Positives = 208/370 (56%), Gaps = 6/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +      V+  +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP L  
Sbjct: 269 FEEGNFPEYVMNEIKKQGFPRPTAIQSQGWPIALSGRDMVGIAQTGSGKTLAYMLPGLVH 328

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKK 118
           +  +K   R   P  L+L PTRELA Q+     ++G +   N+    + GG     Q + 
Sbjct: 329 ISHQKPLTRGDGPIVLVLAPTRELAQQIQTVVREFGNHSKPNIRYTCIFGGALKGPQVRD 388

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG +V+I TPGR++D   RG   ++    LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 389 LERGVEVVIATPGRLIDFLERGITNLHRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDR 448

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ--YSKKCALLQ 236
           Q L++SAT   E+Q ++E+FL++  +I + + S  A    H  V    +     K   L 
Sbjct: 449 QVLMWSATWPKEVQTLAEDFLRDYIQINIGSLSLAANHNIHQIVDVCEENEKESKLLKLL 508

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + + S D     IIF   KK V +L  ++ + G+   +IHG+  Q  R  +L +F+ G  
Sbjct: 509 KEIASTDASNKIIIFVETKKKVDDLLKNIVRDGYGATSIHGDKSQSERDYVLQDFRHGKS 568

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+ DV +V NFD PN +E+YIHRIGRTGR  ++G A++     + + 
Sbjct: 569 TILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCSQYGTAYSFFTPNNGRQ 628

Query: 357 IDAIEKLIEK 366
              +  ++E+
Sbjct: 629 ARELLSVLEE 638


>gi|159490042|ref|XP_001702998.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158270905|gb|EDO96736.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 485

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 129/357 (36%), Positives = 199/357 (55%), Gaps = 3/357 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G SP V+ A+   GY  PTPIQ + +P+++Q  DV G+A+TG+GKTA+FVLPM+  
Sbjct: 12  FDSMGFSPDVLRAIKRKGYRLPTPIQRRAMPMIMQGLDVVGMARTGSGKTAAFVLPMIHR 71

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++   R    R +IL PTRELA Q         K  +L  A L+GG   E Q  +L   
Sbjct: 72  LKEHSIRAGA-RAVILSPTRELALQTHKTVRDLCKYTSLRTACLVGGDSMEVQFAELAAN 130

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV++ TPGR+  H    + L +  +E  V DEADRM +MGFI  +  +   +   RQTL
Sbjct: 131 PDVIVATPGRLAHHLEEVEGLSLRAVEYCVCDEADRMFEMGFIAQVSELLRKMSPGRQTL 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   L + +   L  P+ + ++T    +  +   F      +  K A +  L++ 
Sbjct: 191 LFSATMPSTLAEFASAGLNAPQLVRLDTERKISPELGLAFFTCRCAFEDKVAAMLHLVRE 250

Query: 242 QDTMKN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   + +   L   L K+G     + G++DQ +R   ++ F+ G   L+V
Sbjct: 251 VVPANQLTILFTATRHHAEFLYTLLLKEGVDAACVFGSMDQTARKIHVAKFRAGRSHLLV 310

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +D+AARG+DIP + +V NFD P + E ++HR+GR  RAGR G A++L+ +E++ ++
Sbjct: 311 TTDVAARGIDIPLIDNVINFDFPPKPELFVHRVGRAARAGRSGTAYSLLTREELPYL 367


>gi|90023351|ref|YP_529178.1| putative ATP-dependent RNA helicase [Saccharophagus degradans 2-40]
 gi|89952951|gb|ABD82966.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 436

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 215/379 (56%), Gaps = 9/379 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F++LGL   +  A+    + KPT +Q++TIP VL   D+   A+TG+GKTA+F+LPML
Sbjct: 1   MEFSELGLHQSLQKALDKLTFTKPTDVQVQTIPAVLAGKDIMVSAKTGSGKTAAFLLPML 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L   R      R LIL PTRELA Q    FE++     + V L++GG  ++ Q   +
Sbjct: 61  HKFLNDPRPNTST-RALILLPTRELALQTVKAFEQFAGYTQIKVGLIMGGEAYKHQVATV 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  +VL+ TPGR+++H   G +  +++E LV+DE+DRMLDMGF   +  I ++    RQ
Sbjct: 120 RKNPEVLVATPGRLVEHIKNGNVDFSDLEFLVLDESDRMLDMGFQENMLAIAAVCNEERQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT+  +        LQ+P RI+V++       I    V      S K  L+ +L+
Sbjct: 180 NLLFSATLKHKGIGGITGLLQDPVRIQVDSAKEGHSNITQQRVFA-DDDSHKEKLVVKLI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +D  +  I+FCN +     + + L         IHG + Q  R ++++ F +G I+++
Sbjct: 239 AEEDAQRV-IVFCNTRLQCQKVSNILRANKLVSEYIHGEVTQSDRKQVMNRFIDGKIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI DV  V NF      + ++HR+GRTGR+ + G A TL++ ++   + +
Sbjct: 298 VATDVAARGLDIKDVDLVINFSAAFTGDEHVHRVGRTGRSDKTGLAITLISPKEFNPMSS 357

Query: 360 IE-----KLIEKKVDWLNG 373
           IE     +LI +KV  L G
Sbjct: 358 IERYLKIRLIPRKVKGLEG 376


>gi|219110339|ref|XP_002176921.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411456|gb|EEC51384.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 529

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 141/394 (35%), Positives = 215/394 (54%), Gaps = 28/394 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  +   V+  VL  G+ KPTPIQ +  P+ L+  ++ G++ TG+GKT +F+LP +
Sbjct: 130 MTFDEASMPEYVLNEVLKCGFDKPTPIQSQGWPMALKGRNMVGVSATGSGKTLAFLLPAM 189

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   L+ G      P  L+L PTRELA Q+ +  +K+G +  +   ++ GG+    
Sbjct: 190 IHINAQPYLKPGDG----PIVLVLAPTRELAVQIKEECDKFGSSSEIKNTVVYGGVKKHT 245

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++L  GA++ I TPGR++DH  +G   +  +  LV+DEADRMLDMGF P ++ I S +
Sbjct: 246 QLRELRAGAEICIATPGRLIDHLEQGNTNLKRVTYLVLDEADRMLDMGFEPQLRKIVSQI 305

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYS 229
              RQ L++SAT   E+Q ++ ++LQ+  ++ V +   +A     + IE C      +Y 
Sbjct: 306 RPDRQVLMWSATWPKEVQALANDYLQDFYQVTVGSLDLSANKDVTQIIEVC--TDMDKYR 363

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
                L++ L  +D +   ++F   KK    L  SL   GF   A+HG+  Q  R   L 
Sbjct: 364 NLQRYLRENLSPKDRV---LVFVETKKGCDMLTRSLRSDGFQARAMHGDKSQEERDWALR 420

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK     L+VA+D+AARGLD+ D+  V NFD P   ++YIHR+GRTGRAG+ G A +  
Sbjct: 421 EFKGMQSTLLVATDVAARGLDVDDIRIVVNFDFPKEMDSYIHRVGRTGRAGKKGFAVSFF 480

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
                   D   +L  + VD LN   +S N P E
Sbjct: 481 VP------DKNARLARELVDILN--RTSQNVPQE 506


>gi|330873852|gb|EGH08001.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963764|gb|EGH64024.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 459

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 134/373 (35%), Positives = 219/373 (58%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++  N+ V  L GG+ F  Q   LE 
Sbjct: 66  INP---RFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQTPQRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F+++P+ ++V    + ++ IE  F     +   + A+++ L   
Sbjct: 183 LFSATYPVGIKQLSSKFMRDPQTVKVEALHADSQ-IEQIFYEISPEQRLE-AVVKVLGHF 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T  + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 241 RPT--SCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 299 TDVAARGLDIDALDMVLNVELARDSEIHIHRVGRTGRAGETGIAVSLVAPSESQRARAIE 358

Query: 362 KLIEKKVDWLNGD 374
           +L +  ++W   D
Sbjct: 359 ELQKAPLNWQQYD 371


>gi|291165171|gb|ADD81190.1| vasa [Scomber australasicus]
          Length = 645

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 132/359 (36%), Positives = 205/359 (57%), Gaps = 14/359 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 208 MTFDEAQLCESLRKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 267

Query: 61  T-ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G A  R      P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 268 QQLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGH 327

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + +ERG +++  TPGR+LD   RGK+ ++ +  LV+DEADRMLDMGF P ++ +    
Sbjct: 328 QIRDIERGCNIVCGTPGRLLDMIGRGKVGVSKLRYLVLDEADRMLDMGFEPDMRRLVGSP 387

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +++Q+++ +FL+     + V         +E  F+    ++S
Sbjct: 388 GMPSKENRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQV-TKFS 446

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL  L  +   M+  ++F   K+    +   L ++     +IHG+ +QR R + L+
Sbjct: 447 KREQLLDLLKTT--GMERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALA 504

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +F+ G   +MVA+ +AARGLDIPDV HV NFD+PN  + Y+HRIGRTGR G  G+A + 
Sbjct: 505 DFRSGKCPVMVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSF 563


>gi|261368147|ref|ZP_05981030.1| cold-shock DEAD box protein A [Subdoligranulum variabile DSM 15176]
 gi|282569910|gb|EFB75445.1| cold-shock DEAD box protein A [Subdoligranulum variabile DSM 15176]
          Length = 395

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 124/365 (33%), Positives = 214/365 (58%), Gaps = 8/365 (2%)

Query: 1   MDFADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M F +L  ++P+++ A    G+ + T IQ K IPL++  HD+   A TGTGKT +F +P+
Sbjct: 1   MQFTELTHVAPEIIRATQAMGFTEMTEIQEKAIPLMMDGHDMIAKAPTGTGKTVAFGIPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
           L+ ++    +   P+ ++L PTRELA Q+A + +   +    + +  + GG   + Q ++
Sbjct: 61  LSKVDPASLK---PQAVVLSPTRELAQQIAQDLQNLAQFLPAIKIVCVYGGAGLDKQQRQ 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G  +++ TPGR++DH+    + ++++E +V+DEAD ML+MGF   +++I  L+   +
Sbjct: 118 LKAGCQIVVATPGRLMDHYRHHAIDVSDVETVVLDEADEMLNMGFYKDVRHIIDLMKHRK 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
              +FSAT++ E+  +   +  N   + V     ++  I    + T  +   K A   Q+
Sbjct: 178 SLSMFSATISREVLDIGWLYQHNAAEVSVQPVEDSSPKIAQYKLLTTGR--DKLADAAQI 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S+   K  +IFCN K N   L + L +  F+V  +HG++ Q  R +I++ FK G I +
Sbjct: 236 IISEG-YKRVMIFCNTKYNTGMLANQLARLNFNVDCLHGDLSQAERNRIMTRFKAGEIAV 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ DV  V N+DVP   E+Y HRIGRTGRA + G ++    KE+ K +D
Sbjct: 295 LVATDVAARGIDVSDVDAVINYDVPEENEHYTHRIGRTGRARKEGASYLFYTKEEQKRVD 354

Query: 359 AIEKL 363
            + +L
Sbjct: 355 QLLRL 359


>gi|237836123|ref|XP_002367359.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii
           ME49]
 gi|14595111|emb|CAC43441.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii]
 gi|211965023|gb|EEB00219.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii
           ME49]
 gi|221484990|gb|EEE23280.1| conserved hypothetical protein [Toxoplasma gondii GT1]
 gi|221505957|gb|EEE31592.1| eukaryotic translation initiation factor 4A, putative [Toxoplasma
           gondii VEG]
          Length = 412

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 127/363 (34%), Positives = 203/363 (55%), Gaps = 11/363 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L+  ++  +   G+ KP+ IQ + I  +L RHD  G AQ+GTGKTA+F +  L +
Sbjct: 41  FDALKLNESLLRGIYSYGFEKPSAIQQRGIKPILDRHDTIGQAQSGTGKTATFAIAALQL 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     +   + LIL PTRELA Q+       G    +     +GG        KL+ G
Sbjct: 101 IDYN---INNCQVLILAPTRELAQQIQKVVLALGDYLQVRCHACVGGTVVRDDIAKLKAG 157

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ D   +  L ++++++ ++DEAD ML  GF   I ++   +P   Q  L
Sbjct: 158 VHMVVGTPGRVHDMMEKRHLRVDDMKLFIMDEADEMLSRGFKSQIYDVFKKLPPDVQVAL 217

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  ++ +++  F+++PKRI V     T E I   +VA   +  K    C L + L 
Sbjct: 218 FSATMPQDILELTTKFMRDPKRILVKNDELTLEGIRQFYVAVEKEDWKLETLCDLYETL- 276

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   II+CN ++ V  L   + ++ F+V ++HG++DQ+SR  I+  F+ G+ +++
Sbjct: 277 ----TITQAIIYCNTRRKVDFLTSKMSERDFTVSSMHGDMDQKSREMIMREFRSGSTRVL 332

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V   D++ +  
Sbjct: 333 ITTDLLARGIDVQQVSLVINYDLPATKENYIHRIGRSGRFGRKGVAINFVTSSDVEQLKE 392

Query: 360 IEK 362
           IEK
Sbjct: 393 IEK 395


>gi|268679387|ref|YP_003303818.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617418|gb|ACZ11783.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 463

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 135/345 (39%), Positives = 202/345 (58%), Gaps = 6/345 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY   TPIQ  ++P +L+  D+   A+TG+GKT +F LP+L  L   + R++   +++L 
Sbjct: 25  GYHNMTPIQEASLPFILEGRDIVAKAKTGSGKTLAFGLPLLLALHVKQMRIQ---SVVLC 81

Query: 80  PTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QV+    K     +N+ +  L GG  F  Q   LE GA +++ TPGRIL H  
Sbjct: 82  PTRELAEQVSAELRKLASFTHNIKIVTLCGGARFVPQCISLEHGAHIVVGTPGRILQHLQ 141

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
              +   +I+ LV+DEADRMLDMGF   I+ I + +P  RQTLLFSAT   E++++ +  
Sbjct: 142 EKTINFEHIKTLVLDEADRMLDMGFYEDIEKIIAKMPKERQTLLFSATFPREIEQMCQEV 201

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            +   +I V     +A  +    +A   +  +K A L+  L + +  K+ IIFC  K  V
Sbjct: 202 QKEALQISVEEEQKSA-PLSISQIALKVEEREKEATLEAFLLN-EMPKSVIIFCKTKVAV 259

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             L  SL + GF    +HG+++Q +R + L  F  G+ Q++VA+DLAARGLDI DV  V 
Sbjct: 260 SALQSSLYEAGFDALCLHGDLEQIARDENLLLFANGSAQILVATDLAARGLDIKDVEMVI 319

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           N+++P+  E Y HRIGRTGR G+ GKA + V   +   +  +E++
Sbjct: 320 NYELPHTIEIYTHRIGRTGRMGKEGKAISFVTPSEESFLHELERV 364


>gi|16800283|ref|NP_470551.1| hypothetical protein lin1214 [Listeria innocua Clip11262]
 gi|16413688|emb|CAC96445.1| lin1214 [Listeria innocua Clip11262]
          Length = 470

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 136/367 (37%), Positives = 206/367 (56%), Gaps = 17/367 (4%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +L LS ++  A+ + GY + TP+Q   IP+ L   D+   +QTG+GKTA+F +P   I E
Sbjct: 3   NLKLSEEIKRAINELGYKEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIP---IAE 59

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           +       P+ LI+ PTRELA QV       G+   +  A + G  PF  Q  +L +   
Sbjct: 60  QVVWEENKPQALIIVPTRELAMQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKNH 119

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGR+LDH  +G L ++ +  LV+DE D ML MGFI  +++I S +P  RQ L FS
Sbjct: 120 IVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFS 179

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT+ +E+Q + + +  NP  IE+   S     I H  +    Q   K   L+ +L +++ 
Sbjct: 180 ATLPEEMQDLIKRYQDNPMVIEM--ASEKTNPIFHVEM----QTDNKEKTLKDVLITENP 233

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             + IIFCN K  V  L   L+        IHG + Q  R + + +FK G  + ++A+D+
Sbjct: 234 -DSAIIFCNTKNQVDELTDLLD---VKASKIHGGLRQEDRFRAMDDFKSGKSRFLIATDV 289

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL- 363
           A RG+D+ +V  V N+D+P   ENY+HRIGRTGRAG+ GKA + V   +   +  IE++ 
Sbjct: 290 AGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEML 349

Query: 364 ---IEKK 367
              IEKK
Sbjct: 350 NITIEKK 356


>gi|89890271|ref|ZP_01201781.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
 gi|89517186|gb|EAS19843.1| ATP-dependent RNA  helicase [Flavobacteria bacterium BBFL7]
          Length = 377

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 140/381 (36%), Positives = 213/381 (55%), Gaps = 8/381 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS +++ A+ +  +  PTPIQ   +P +L   DV GIA+TG+GKT ++ LP+L
Sbjct: 1   MSFESLGLSNQLLFALRENQFSHPTPIQKLAMPDILAGKDVLGIAKTGSGKTMAYALPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKK 118
             LE   +  R    LIL PTRELAAQV++ F  Y K     L    + GG     Q +K
Sbjct: 61  QRLEGIESENRHITALILVPTRELAAQVSEVFIPYSKALTKPLITMAVYGGASINPQMRK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +    D+L+ TPGR+L+      + + N++ LV+DEAD+ML  GF   +  I  L+P  R
Sbjct: 121 M-NNVDILVATPGRLLELIEANAVHLKNVKALVLDEADKMLTKGFKKELDQILKLLPNKR 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT+++++ ++    L +P    V         I+          +KK ALL+ L
Sbjct: 180 QNLLFSATLSEDVDELQRVLLNDPVTASVEEKEEDISLIKQT--GYRVTENKKGALLRHL 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ ++ M   +IFC+    V ++   L+K G +  AIH    Q +R   LS FK G +  
Sbjct: 238 MKEKE-MTQVLIFCSSTYQVDHVNDKLKKNGIASKAIHSKKSQGARNSALSEFKSGELTA 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V++DL ARG+DI  +  V N+++P   ++++HRIGRTGRA   G+A T ++ E+  H  
Sbjct: 297 LVSTDLLARGIDIEFLPFVVNYELPRSPKDFVHRIGRTGRAENPGEAITFISSEESHHWR 356

Query: 359 AIEKLIEKKVDWLNGDLSSLN 379
            I+K ++ KV W   DL   N
Sbjct: 357 VIQKKMKIKV-WTE-DLPEWN 375


>gi|281353511|gb|EFB29095.1| hypothetical protein PANDA_004711 [Ailuropoda melanoleuca]
          Length = 581

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 130/335 (38%), Positives = 200/335 (59%), Gaps = 7/335 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG--- 66
           P+V+  +  AG+ KPTPIQ ++ P+VLQ  D+ G+AQTGTGKT S+++P    L+     
Sbjct: 250 PEVMENIKKAGFQKPTPIQSQSWPIVLQGIDLIGVAQTGTGKTLSYLMPGFIHLDSQPVI 309

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTRELA QV     KY     L    + GG     Q + L++G D++
Sbjct: 310 RGQRNGPGMLVLTPTRELALQVEAECSKYSYK-GLKSVCIYGGGDRNGQIQDLKKGVDII 368

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + ++  LV+DEAD+MLDMGF P I  I   V   RQT++ SAT
Sbjct: 369 IATPGRLNDLQMNNFVNLRSVTYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTIMTSAT 428

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
               ++++++++L+ P  + V T    A  T++   + T  +  +KC+ +Q  L+S    
Sbjct: 429 WPYAVRRLAQSYLKEPMIVYVGTLDLMAVSTVKQNIIVTTEE--EKCSHIQTFLESMSPK 486

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F ++K    +L   L  +  SV ++HGN +Q  R + L NFK G +++++A+DLA
Sbjct: 487 DKVIVFVSRKATADHLSSDLILRHVSVESLHGNREQSDRERALENFKTGKVRILIATDLA 546

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           +RGLD+ D+ HV+N+D P   E Y+HR+GRTGRAG
Sbjct: 547 SRGLDVLDITHVYNYDFPRNIEEYVHRVGRTGRAG 581


>gi|304413657|ref|ZP_07395101.1| ATP-dependent RNA helicase [Candidatus Regiella insecticola LSR1]
 gi|304283748|gb|EFL92142.1| ATP-dependent RNA helicase [Candidatus Regiella insecticola LSR1]
          Length = 449

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 135/356 (37%), Positives = 207/356 (58%), Gaps = 10/356 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++  L+ +++ A+ D GY +PT IQ   IP  ++  D+ G A TGTGKTA+F+LP+L  
Sbjct: 6   FSEFDLNDRLIKALNDKGYQRPTAIQAMAIPAAMEGRDLLGSAPTGTGKTAAFLLPILQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVA+   +   N +L +  + GG+ +    +    
Sbjct: 66  LLDFPRRKSGPPRILILTPTRELAMQVAEQANELAVNTSLAITTITGGVAYMNHAEIFTE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +        + +E L++DEADRMLDMGF   I+ I +     +QTL
Sbjct: 126 NQDIVVATTGRLLQYIQEENFDCHAVETLILDEADRMLDMGFAKDIEAIAAKTCCRKQTL 185

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAE---TIEHCFVATYAQYSKKCALLQQ 237
           LFSAT+  E +++ ++  L++P  +E++   S  E    I+  + A   ++ K  ALL  
Sbjct: 186 LFSATLEGEAIREFAKRILKDP--LELDADPSRRERKKIIQWYYRADDIEHKK--ALLCH 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL +Q  +K  IIF    + V  L   L +       + G + Q  R + +    +G I 
Sbjct: 242 LL-TQPEVKKSIIFVRTCERVHELVGWLREADIHAWYLEGKMIQAKRTEAVIRLNDGRIN 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           ++VA+D+A+RGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +L+   D
Sbjct: 301 VLVATDVASRGLDIDDISHVFNFDMPRTADVYLHRIGRTGRAGRKGTAISLIENHD 356


>gi|171680181|ref|XP_001905036.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939717|emb|CAP64943.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1221

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 132/372 (35%), Positives = 210/372 (56%), Gaps = 10/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL+  ++  +   GY KPTPIQ++ +P+++   DV G+A+TG+GKT +F LPML  
Sbjct: 582 WSQCGLTRPILDTIEGLGYEKPTPIQMQALPVIMSGRDVIGVAKTGSGKTMAFALPMLRH 641

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + K +  V     P  LI+ PTREL  Q+  +   + K   L      GG   + Q  +L
Sbjct: 642 I-KDQDPVSGDDGPIALIMTPTRELCTQIYTDLLPFTKVLKLRAVAAYGGNAIKDQIAEL 700

Query: 120 ERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++ TPGR++D    N G++  +     LV+DEADRM DMGF P +  I + V  
Sbjct: 701 KRGAEIIVATPGRMIDLLAANSGRVTNLKRATYLVLDEADRMFDMGFEPQVMKIFNNVRP 760

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCAL 234
            RQT+LFSATM   +  +++  L++P  I V   S  A  I      +    ++ +   L
Sbjct: 761 DRQTILFSATMPRIIDALTKKVLRDPVEITVGGRSVVAPEITQVVEIIDESKKFVRLLEL 820

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L +L    D ++  +IF  +++   +L   L ++G+   +IHG  DQ  R   +S+FK+G
Sbjct: 821 LGELYADDDDVR-ALIFVERQEKTDDLLRELLRRGYGCMSIHGGKDQEDRNSTISDFKKG 879

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +++A+ +AARGLD+  +  V N+DVPN  E+Y+HR GRTGRAG  G A T + +E  
Sbjct: 880 VCPILIATSVAARGLDVKQLKLVINYDVPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQE 939

Query: 355 KHIDAIEKLIEK 366
                + K +E+
Sbjct: 940 NCAPGVAKALEQ 951


>gi|171059675|ref|YP_001792024.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170777120|gb|ACB35259.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 477

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 144/394 (36%), Positives = 210/394 (53%), Gaps = 14/394 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ L L P  +  +   GY   TPIQ  ++PL L  HD+   A+TG+GKTA+F L +L
Sbjct: 20  LSFSSLPLPPATLANLQQLGYTAMTPIQAASLPLALAGHDLIAQAKTGSGKTAAFALALL 79

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             L   R  V+   +L+L PTRELA QV     +  +  + + V  L+GG     Q   L
Sbjct: 80  ANLNPRRFAVQ---SLVLCPTRELAEQVTQEVRRLARAEDHIKVLTLVGGTTMRPQLASL 136

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA ++I TPGRI+DH  RG L ++ +  LV+DEADRMLDMGF   I+ +    P  RQ
Sbjct: 137 EHGAHIVIGTPGRIMDHLERGSLDLSALNTLVLDEADRMLDMGFFDDIKTVIQQCPKERQ 196

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  + + ++S  F++ PK I++ T    A  I   F   Y     +      LL
Sbjct: 197 TLLFSATYPEGIARISAAFMRAPKEIKL-TEKHAAGKIRQIF---YEVREDERLHAVSLL 252

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + + FCN K+   +L   L  QG+S   +HG+++QR R ++L  F   +  ++
Sbjct: 253 LDHYRPVSTLAFCNTKQQCRDLVQVLRAQGYSALELHGDLEQRDRDQVLIQFANQSCSVL 312

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +G V N ++      + HRIGRTGRA   G AF+L + +++  +  
Sbjct: 313 VATDIAARGLDISQLGAVINVEITPDIATHTHRIGRTGRADEEGWAFSLASMDEMGRVGQ 372

Query: 360 IEKLIEKKVDW------LNGDLSSLNPPLEKIDI 387
           IE +      W             L PP++ I I
Sbjct: 373 IEVMHGFTAQWQPLATLTKTSAEPLLPPMQTIQI 406


>gi|291242437|ref|XP_002741112.1| PREDICTED: eukaryotic translation initiation factor 4A-like
           [Saccoglossus kowalevskii]
          Length = 398

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 208/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++GL   ++  +   G+ KP+ IQ + +  V++  DV   AQ+GTGKTA+F + +L  
Sbjct: 27  FDNMGLREDLLRGIYAYGFEKPSAIQQRAVRPVVKGRDVIAQAQSGTGKTATFSISILQT 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   ++     IGG       +KL+ G
Sbjct: 87  LD---TQVRETQALILSPTRELAVQIQKVILALGDYMSVQCHSCIGGTNIGEDIRKLDYG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 144 QHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQIYDVYRYLPPATQVIL 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
           FSAT+  E+ +++  F+  P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 204 FSATLPHEILEMTHKFMTEPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 263 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGASRVL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 319 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKSDDIRILRD 378

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 379 IEQYYSTQIDEMPMNVADL 397


>gi|1170507|sp|P41380|IF4A3_NICPL RecName: Full=Eukaryotic initiation factor 4A-3; Short=eIF-4A-3;
           AltName: Full=ATP-dependent RNA helicase eIF4A-3
 gi|19699|emb|CAA43514.1| nicotiana eukaryotic translation initiation factor 4A [Nicotiana
           plumbaginifolia]
          Length = 391

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 207/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++G+   ++  V   G+ KP+ IQ + +  ++   DV   AQ+GTGKT+   L +  I
Sbjct: 20  FAEMGIKDDLLRGVYQYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMIALTVCQI 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++   + V+    LIL PTRELAAQ        G   N+     IGG       +KLE G
Sbjct: 80  VDTKSSEVQ---ALILSPTRELAAQTEKVILAIGDYINVQAHACIGGKSVGEDIRKLEHG 136

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++L++DE+D ML  GF   I ++   +P   Q +L
Sbjct: 137 VQVVSGTPGRVCDMIKRRTLRTRGIKLLILDESDEMLSRGFKDQIYDVYRYLPPELQVVL 196

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+ +E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 197 ISATLPNEILEITSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL- 255

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I++ F+ GT +++
Sbjct: 256 ----TITQAVIFCNTKRKVDWLTSKMRENNFTVSSMHGDMPQKERDAIMAEFRGGTTRVL 311

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +  
Sbjct: 312 ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRD 371

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 372 IEQYYSTQIDEMPMNVADL 390


>gi|294012092|ref|YP_003545552.1| putative helicase [Sphingobium japonicum UT26S]
 gi|292675422|dbj|BAI96940.1| putative helicase [Sphingobium japonicum UT26S]
          Length = 178

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 117/178 (65%), Positives = 138/178 (77%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS +++ AV +AGY  PTPIQ + IP VL   D+ GIAQTGTGKTASFVLPM+
Sbjct: 1   MTFADLGLSDELLKAVSEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  GRAR  MPR+LILEPTRELAAQVA+NFEKYGK + L +ALLIGG+    Q K LE
Sbjct: 61  DILAHGRARALMPRSLILEPTRELAAQVAENFEKYGKYHKLNMALLIGGVQMGDQLKALE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +G DVLI TPGR++D F RGK+L+N   +LVIDEADRMLDMGFIP I+ I + +P  R
Sbjct: 121 KGVDVLIATPGRLMDLFQRGKILLNGCSMLVIDEADRMLDMGFIPDIEEICTKLPAQR 178


>gi|294934696|ref|XP_002781195.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239891530|gb|EER12990.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 584

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/351 (37%), Positives = 194/351 (55%), Gaps = 6/351 (1%)

Query: 7   GLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           G  P+V+    + AGY +PT IQ    P+ L   D+ G+AQTG+GKT +F+LP + I   
Sbjct: 179 GQFPEVLMKEFEKAGYTEPTNIQKIGWPVALSGRDMVGVAQTGSGKTVAFMLPAI-IHVN 237

Query: 66  GRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +A ++    P  L+L PTRELA QV     ++GK   L    + GG+P   Q   L RG
Sbjct: 238 AQAPLKHGDGPVVLVLVPTRELAMQVQAEATRFGKMAGLMNTAIFGGVPRYNQANDLRRG 297

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR+LD    G   +  +  LV+DEADRMLDMGF P I+ I S +   RQT +
Sbjct: 298 VEICIATPGRLLDFLETGVTNLKRVTYLVLDEADRMLDMGFEPQIRRIVSQIRPDRQTTM 357

Query: 183 FSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +SAT   E+Q ++ +F  + P R+ V      A       V   ++  K+      L ++
Sbjct: 358 WSATWPKEVQSMARDFCREEPIRLTVGNTQLQANPDVKQRVEVVSEMDKRQMFFDWLKET 417

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   KK    L   +    F+  +IHG+ +QR R +IL++FK G   ++VA
Sbjct: 418 YPKGSRIIVFTETKKGADALTREMRYNNFNAASIHGDKEQRERDRILNDFKTGRCNVLVA 477

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +D+A RGLDI +V  V N+D+P   E+Y+HRIGRTGRAG  G + T +  +
Sbjct: 478 TDVAQRGLDIKNVEWVVNYDMPKTVEDYVHRIGRTGRAGAVGNSLTFITND 528


>gi|302686080|ref|XP_003032720.1| hypothetical protein SCHCODRAFT_67353 [Schizophyllum commune H4-8]
 gi|300106414|gb|EFI97817.1| hypothetical protein SCHCODRAFT_67353 [Schizophyllum commune H4-8]
          Length = 652

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 136/367 (37%), Positives = 200/367 (54%), Gaps = 25/367 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +  L P ++  +  A Y  PTP+Q  +IP+V    D+   AQTG+GKT  F+ P+L
Sbjct: 163 LEFTNPPLDPVLLENIAMAHYTTPTPVQKYSIPIVANNRDLMACAQTGSGKTGGFLFPIL 222

Query: 61  TI-------------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
           +                 GR R   P  L+L PTREL +Q+ +   K+     +   ++ 
Sbjct: 223 SASFAAGPAPTPDQGASYGRQRKAYPTALVLAPTRELVSQIHEEARKFAYRSWVRPCVVY 282

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG D+L  TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P I
Sbjct: 283 GGADIGQQLRTLERGCDLLSATPGRLVDLIERGRISLANIKYLVLDEADRMLDMGFEPQI 342

Query: 168 QNITSL--VP--FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I     +P    RQTL+FSAT   ++Q ++++FL++   + V    ST+E I    + 
Sbjct: 343 RRIVQGEDMPGVHERQTLMFSATFPRDIQLLAKDFLKDYIFLSVGRVGSTSENITQK-IE 401

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNG-------IIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
                 K+  LL  L  +Q    NG       ++F   K+    LC  L        +IH
Sbjct: 402 FVEDPDKRSVLLDILSANQAPAANGGNGMGLTLVFVETKRMADGLCDFLLSHRMPATSIH 461

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G+  QR R   L+ F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRT
Sbjct: 462 GDRTQREREMALNTFRSGRTPILVATAVAARGLDIPNVTHVVNYDLPGDIDDYVHRIGRT 521

Query: 337 GRAGRHG 343
           GRAG  G
Sbjct: 522 GRAGNTG 528


>gi|256831112|ref|YP_003159840.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256580288|gb|ACU91424.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
           DSM 4028]
          Length = 741

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 202/337 (59%), Gaps = 6/337 (1%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELA 85
           P+Q++TIP +L   DV   +QTG+GKT +F+LP+L  +E G   +  P+ L+L PTRELA
Sbjct: 48  PVQVQTIPYMLGGQDVMVQSQTGSGKTGAFLLPILDRIETG---LGAPQALVLVPTRELA 104

Query: 86  AQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMN 145
            QV  + E+ G+   +    + GG+ ++ Q + LE GA ++I TPGRILDH  +G L ++
Sbjct: 105 VQVTRDAEELGREAGIKPLSIYGGVGYKGQIQGLEDGAQLIIGTPGRILDHLLKGNLNLD 164

Query: 146 NIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRI 205
            ++ILV DEADRML MGF P ++ +   +P   Q+ +FSAT    ++++++ FL++P  +
Sbjct: 165 RLKILVFDEADRMLSMGFYPDMKQLQRYLPRGLQSAMFSATYPGHVKRLAQQFLKDPVFV 224

Query: 206 EVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL 265
            ++        + H      A   +K  +L ++++ Q+   + IIFCN K +V  +   L
Sbjct: 225 SLSQSQVHVSDVLHVVYKVPAM--QKSRILVKIIE-QENPASAIIFCNTKADVHFVSTVL 281

Query: 266 EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNR 325
            + G+ V  I  ++ Q +R ++L   +   ++ +VA+D+AARG+DI ++ HVF +  P  
Sbjct: 282 RRFGYDVGEISADLTQAAREEVLEKLRLNKLKFLVATDVAARGIDIHELSHVFQYQPPQD 341

Query: 326 AENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
            E Y+HR GRTGRAG  G A + V+  +   ++ I K
Sbjct: 342 HEAYVHRTGRTGRAGAAGVAISFVSGMEEIELEQIAK 378


>gi|302406797|ref|XP_003001234.1| ATP-dependent RNA helicase DBP10 [Verticillium albo-atrum VaMs.102]
 gi|261359741|gb|EEY22169.1| ATP-dependent RNA helicase DBP10 [Verticillium albo-atrum VaMs.102]
          Length = 902

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 135/398 (33%), Positives = 219/398 (55%), Gaps = 34/398 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+V+PTPIQ KTIPL++ R DV G+A+TG+GKTA+FV+PM+  
Sbjct: 89  FQVMGLNSNLLRAITKKGFVQPTPIQRKTIPLIMDRKDVVGMARTGSGKTAAFVIPMIER 148

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LI+ P+RELA Q     + + K  +L  AL++GG   + Q   L   
Sbjct: 149 LKTHSAKF-GARALIMSPSRELAIQTLRVVKDFNKGTDLKAALVVGGDSMDEQFSLLSAN 207

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P +RQ+LL
Sbjct: 208 PDIIIATPGRFLHLKVEMSLNLSSIQYVVFDEADRLFEMGFAAQLTEILHALPPSRQSLL 267

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
           FSAT+   L + +   LQ+P  + ++  +  +  +E  F        K+ +LL  L    
Sbjct: 268 FSATLPASLVEFARAGLQDPTLVRLDIETKVSPDLESAFFGVKGA-EKEASLLHILHDII 326

Query: 239 ---LQSQDTM-------------------------KNGIIFCNQKKNVVNLCHSLEKQGF 270
              L S D M                          + IIF   K +V  L + L   GF
Sbjct: 327 KMPLGSPDGMPLDGKPNKKRKRGKDGSGGKGKPTEHSTIIFAATKHHVEYLANLLRVAGF 386

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           +V  ++G +DQ +R     NF+ G   ++V +D+AARG+DIP + +V N+D P + + ++
Sbjct: 387 AVSYVYGALDQEARRIHTENFRNGRSNILVVTDVAARGIDIPVLANVINYDFPPQPKVFV 446

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           HR+GRT RAG+ G A+++V + D  ++  ++  + +K+
Sbjct: 447 HRVGRTARAGQRGWAYSIVRELDAPYLLDLQLFLGRKM 484


>gi|66043783|ref|YP_233624.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254490|gb|AAY35586.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Pseudomonas syringae pv. syringae B728a]
          Length = 473

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 135/377 (35%), Positives = 221/377 (58%), Gaps = 8/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 20  FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++  N+ V  L GG+ F  Q   LE 
Sbjct: 80  INP---RFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 137 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F+++P+ ++V    + ++ IE  F     +   + A+++ L   
Sbjct: 197 LFSATYPVGIKQLSSKFMRDPQTVKVEALHADSQ-IEQIFYEISPEQRLE-AVVKVLGHF 254

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T  + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 255 RPT--SCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 313 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 372

Query: 362 KLIEKKVDWLNGDLSSL 378
           +L +  ++W   D  S+
Sbjct: 373 ELQKAPLNWQQYDRLSI 389


>gi|82539888|ref|XP_724299.1| U5 snRNP 100 kD protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23478899|gb|EAA15864.1| U5 snRNP 100 kD protein [Plasmodium yoelii yoelii]
          Length = 967

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 135/380 (35%), Positives = 204/380 (53%), Gaps = 33/380 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  LS  ++ A+  A Y KPTPIQ++ IP+ L+  D+ GIA+TG+GKTA+FVLPML+ 
Sbjct: 545 WEESNLSSDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSY 604

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +++            P  LI+ P+RELA Q+ D   K+    +     ++GG   EAQ  
Sbjct: 605 VKQLPPLTYETSQDGPYALIIAPSRELAIQIYDETNKFASYCSCRTVAVVGGRNAEAQAF 664

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG +++I TPGR+ D   +   ++N    ++IDEADRM+DMGF   +  I   +P +
Sbjct: 665 ELRRGVEIVIGTPGRLQDCLEKAYTVLNQCNYVIIDEADRMMDMGFEDAVHFILDNIPTS 724

Query: 178 ------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
                                   R T +FSATM   ++++S  +L+ P  I +  P + 
Sbjct: 725 NLKSEDDALALQEEMMAKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGAG 784

Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
             +IE      +    KK   LQ+LL+  +     I+F NQKK    +  S+ K  F   
Sbjct: 785 KRSIEQKL--EFITEGKKKQKLQELLEIYEPP--IIVFVNQKKVADIIAKSISKMKFRAI 840

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
           A+HG   Q  R + L+ FK G   ++VA+D+A RG+D+  V  V NFD+P    +Y HRI
Sbjct: 841 ALHGGKVQEMREEALNAFKNGEFDILVATDVAGRGIDVHGVKLVINFDLPKDIASYTHRI 900

Query: 334 GRTGRAGRHGKAFTLVAKED 353
           GRTGRAG  G A + V ++D
Sbjct: 901 GRTGRAGMKGLAISFVTEQD 920


>gi|332995376|gb|AEF05431.1| ATP-dependent RNA helicase DbpA [Alteromonas sp. SN2]
          Length = 460

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 137/359 (38%), Positives = 205/359 (57%), Gaps = 7/359 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           L ++P +  A+   G    +PIQ +++P  L   DV G AQTG+GKT  FV+P L   EK
Sbjct: 9   LEINPAITKALDAQGIFTLSPIQAQSLPHALAGSDVIGQAQTGSGKTLCFVIPAL---EK 65

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGAD 124
               +   + L+L PTRELA QVA  +    K   N+ V  + GG P   Q + L+ GA 
Sbjct: 66  IDPTLFATQVLVLCPTRELADQVAVQYRNAAKQIGNIKVMTICGGQPMGPQIQSLKHGAH 125

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           V++ TPGR+++H  + +L++ ++ + V+DEADRMLDMGF   ++ I S +    QTLLFS
Sbjct: 126 VVVGTPGRVMEHVEKRRLMLKDVRLRVLDEADRMLDMGFEDDLKVIFSPMKKGVQTLLFS 185

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT T+E++++++ +L  P   +V +  S   +I          +++   L   L  SQ  
Sbjct: 186 ATYTEEIERIADQYLTEPVICKVESDESNKPSITQIGYNVLP-HTRIQTLKAILTDSQP- 243

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            K  I+FCN++  V  +  SL + GFS   + G ++Q  R  +L+ F    +Q++VA+D+
Sbjct: 244 -KTAIVFCNRRVQVTEVVASLLEDGFSAAGLQGEMEQYERTAVLNQFASDALQVLVATDV 302

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           AARGLDI D+  V N+ V    E +IHRIGRT RAG  G A TLV  E+   +  IE L
Sbjct: 303 AARGLDIDDIPCVINYTVSEEPETHIHRIGRTARAGAEGTAITLVGDEEEHFLRKIEVL 361


>gi|313157865|gb|EFR57271.1| DEAD/DEAH box helicase [Alistipes sp. HGB5]
          Length = 502

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 227/371 (61%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L  +++  + D  + + TP+Q  TIP++L+  D+ G AQTGTGKTA++ LP+L
Sbjct: 1   MRFDELELEDEILDGLYDMNFQEMTPVQEHTIPVILEGRDIIGCAQTGTGKTAAYTLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             L        + +++I+ PTRELA Q+   F+ +     ++  ++ GG     ++ Q +
Sbjct: 61  NRLLLEGNEDNVIKSVIIVPTRELAQQIDQQFQGFSYYLPISTTVVYGGGDGKGWDVQKR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +  G+DV+I TPGR++ H     + ++++E L++DEADRMLDMGF   I  I S +P  
Sbjct: 121 GMLMGSDVVIATPGRMISHIQNSGIDLSHVECLILDEADRMLDMGFSEDIMKIVSYMPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSAT+  +++++++  L+NP  + +   S   E I+      Y   ++K  ++++
Sbjct: 181 RQTIMFSATLPPKIRELAKTILRNPAEVNIAI-SKPNEAIDQSAYVCYE--NQKLGIIRE 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  ++ T    IIF + K  V  L H+L++   +V A+H +++Q  R +++ +FK   + 
Sbjct: 238 MF-AEPTESKTIIFSSSKMKVKELAHTLKRMKLNVAAMHSDLEQAQREEVMLDFKNNKVS 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+G V N+DVP+  E+YIHRIGRT RA   G A T V++E+    
Sbjct: 297 ILVATDIVARGIDIEDIGLVINYDVPHDPEDYIHRIGRTARAAATGAAVTFVSEEEQGKF 356

Query: 358 DAIEKLIEKKV 368
            AIEK IE+ +
Sbjct: 357 HAIEKFIERDI 367


>gi|326426645|gb|EGD72215.1| DEAD box ATP-dependent RNA helicase [Salpingoeca sp. ATCC 50818]
          Length = 1054

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 138/376 (36%), Positives = 212/376 (56%), Gaps = 10/376 (2%)

Query: 10  PKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
           P+ V  VL A  Y  PTPIQ + +P+++   D+ GIA+TG+GKT +F+LPML  +   R 
Sbjct: 322 PRRVLDVLRALKYDDPTPIQAQALPVIMSGRDMLGIAKTGSGKTLAFLLPMLRHVLDQR- 380

Query: 69  RVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
           RVR       LIL PTRELA Q     +K+ K+ +L +A + GG     Q   L+R  ++
Sbjct: 381 RVRQGEGCIALILSPTRELAVQTYTEAKKFTKHLDLRIACVYGGSDIADQIAHLKRSVEI 440

Query: 126 LICTPGRILDHF--NRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ++CTPGR++D    NRGK+     I  +V+DEADRM DMGF P +  I   +   RQT++
Sbjct: 441 IVCTPGRMIDMLTVNRGKVTNPRRITYVVLDEADRMFDMGFEPQVMRILDNIRPDRQTVM 500

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    ++ ++   L+ P  I+V   S  ++T+E   +    Q   K   L +LL   
Sbjct: 501 FSATFPRAMEVLARKILKKPIEIQVGGRSIVSDTVEQHVLVLEEQ--NKFNKLLELLGIY 558

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
               + I+F ++++    L  +L   G+    +HG + Q  R   + +FK G +++++A+
Sbjct: 559 YVQGSVIVFVHRQEKADMLLTNLMGHGYMSLPLHGAVSQEDRQSNIRDFKLGNVKILIAT 618

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
            +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G AFT V K+D +    + K
Sbjct: 619 SVAARGLDVKSLKLVVNYDCPNHYEDYVHRCGRTGRAGNKGTAFTFVTKDDKQLAGHVIK 678

Query: 363 LIEKKVDWLNGDLSSL 378
            +E     +  DL ++
Sbjct: 679 ALELSSQEVPADLKAV 694


>gi|50549245|ref|XP_502093.1| YALI0C21472p [Yarrowia lipolytica]
 gi|74659998|sp|Q6CB69|DED1_YARLI RecName: Full=ATP-dependent RNA helicase DED1
 gi|49647960|emb|CAG82413.1| YALI0C21472p [Yarrowia lipolytica]
          Length = 618

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 131/344 (38%), Positives = 196/344 (56%), Gaps = 20/344 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-------------ILEK 65
           A Y KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+                +
Sbjct: 178 ARYNKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSQSFFHGPSPTPQPTGPR 237

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
              +   P  L+L PTREL +Q+ D  +K+     +   ++ GG     Q + +ERG D+
Sbjct: 238 HMHKKAYPTALVLAPTRELVSQIYDEAKKFAYRSWVRPCVVYGGADIGEQMRNIERGCDL 297

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT--SLVPFT--RQTL 181
           L+  PGR++D  +RGK+ + NI+ LV+DEADRMLDMGF P I+ I   S +P    RQTL
Sbjct: 298 LVAAPGRLVDLIDRGKVSLENIKYLVLDEADRMLDMGFEPQIRAIVQGSGMPDVNERQTL 357

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +Q ++ +FL++   + V    ST+E I       Y +   K + L  +L +
Sbjct: 358 MFSATFPRNIQMLARDFLKDYIFLSVGRVGSTSENITQK--VEYVEDGDKISALLDILSA 415

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F   K+    LC  L+ + F   +IHG+  QR R + L  F++GT  ++VA
Sbjct: 416 AGKGLT-LVFVETKRGADYLCDVLQSEDFPATSIHGDRSQRDRERALEMFRDGTTPILVA 474

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G A
Sbjct: 475 TAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIA 518


>gi|325094395|gb|EGC47705.1| ATP-dependent RNA helicase DBP10 [Ajellomyces capsulatus H88]
          Length = 941

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 137/391 (35%), Positives = 212/391 (54%), Gaps = 38/391 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL+  ++ A+   G+  PTPIQ KTIPLVL   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 88  FQSLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEK 147

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q + +   
Sbjct: 148 LKSHSAKF-GSRALILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMASN 206

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 207 PDIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFATQLTEILHGLPSSRQTLL 266

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
           FSAT+   L + +   LQ P  I ++  S  +  +++ F  T     K+ ALL  L    
Sbjct: 267 FSATLPKSLVEFARAGLQEPILIRLDAESKISPDLQNAFF-TVKSSEKEGALLHVLHEVI 325

Query: 239 ------LQSQDTMK--------------------------NGIIFCNQKKNVVNLCHSLE 266
                  ++Q   K                          + IIF   K +V  L   L 
Sbjct: 326 KIPTGETEAQKRAKEEVKHSKKRKRSEFTSHSHKESPTEYSTIIFTATKHHVDYLTSILR 385

Query: 267 KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
             GF+V   +G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D P++ 
Sbjct: 386 TSGFAVSYAYGSLDQTARKIEVQNFRAGITHILVVTDVAARGIDIPILSNVINYDFPSQP 445

Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           + ++HR+GRT RAG+ G +++L+ + D  ++
Sbjct: 446 KIFVHRVGRTARAGKTGWSYSLIRESDTPYL 476


>gi|318054604|ref|NP_001187599.1| eukaryotic initiation factor 4a-iii [Ictalurus punctatus]
 gi|308323464|gb|ADO28868.1| eukaryotic initiation factor 4a-iii [Ictalurus punctatus]
          Length = 389

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 208/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 18  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVSAQSQSGTGKTATFCVSVLQC 77

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 78  LD---IQVRETQALILAPTRELAGQIQKVLLALGDFMNVQCHACIGGTNVGEDIRKLDYG 134

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 135 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 194

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 195 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 253

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 254 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ A GLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 310 ISTDVWAGGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 369

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 370 IEQYYSTQIDEMPMNVADL 388


>gi|261868794|ref|YP_003256716.1| ATP-dependent RNA helicase RhlB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414126|gb|ACX83497.1| ATP-dependent RNA helicase RhlB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 418

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 214/367 (58%), Gaps = 9/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FADL L P V+ A+ D G+   TPIQ  ++P+ L+  DV G AQTGTGKT +F+  +   
Sbjct: 11  FADLALHPLVLQALNDKGFDFCTPIQALSLPITLRGKDVAGQAQTGTGKTIAFLSALFHH 70

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +    +     PR LIL PTRELA Q+  + + + K      AL  GG  ++ Q K +E
Sbjct: 71  LLTYPKQTEANQPRALILAPTRELAVQIEHDAQIFLKTTKFKTALAYGGDGYDKQLKAIE 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ- 179
            G DVLI T GR++D+  +G + ++ I+ +V+DEADRM D+GFI  I+ +    P  +Q 
Sbjct: 131 NGVDVLIGTTGRVIDYVKQGVIRLDQIQTVVLDEADRMFDLGFIRDIRYLLRKCPPPQQR 190

Query: 180 -TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237
            T+LFSAT++ ++++++   + +P+ +E+     T + I E  F  +    ++    L  
Sbjct: 191 LTMLFSATLSYKVRELAFEDMNSPEYVEIEPEQKTGQQIKEELFYPS----NRDKMPLLL 246

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G + 
Sbjct: 247 TLLEEEWPERCIVFANTKHKCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKKFTDGDLD 306

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL I +V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   ++   ++
Sbjct: 307 ILVATDVAARGLHIAEVTHVFNYDLPDDREDYVHRIGRTGRAGESGISISFACEQYAMNL 366

Query: 358 DAIEKLI 364
            AIE+ I
Sbjct: 367 PAIEEYI 373


>gi|126323567|ref|XP_001370574.1| PREDICTED: similar to R27090_2 [Monodelphis domestica]
          Length = 491

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 154/417 (36%), Positives = 224/417 (53%), Gaps = 17/417 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA LGL+  +V      G   PTP+Q   +P +L+  D  G A+TG+GKTA+FVLP+L 
Sbjct: 3   EFAKLGLASWLVAQCRQLGLKHPTPVQQNCVPAILEGRDCMGCAKTGSGKTAAFVLPILQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    +     L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R
Sbjct: 63  KLSEDPFGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSR 119

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFT 177
              V+I TPGR+ DH        +  I  LV+DEADR+L+ G   F   ++ I    P  
Sbjct: 120 KPHVVIATPGRLADHLRSSNTFNIKKIRFLVMDEADRLLEQGCTDFTKDLEVIFDAAPAQ 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT+TD L+ +       P   E      T E ++  ++    +   K A L  
Sbjct: 180 RQTLLFSATLTDTLKVLQGIATNKPFFWEAPAEVRTVEQLDQRYLLVPEKV--KDAYLVH 237

Query: 238 LLQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L+Q+ QD  ++   IIF +  K    L   L +  F   A+H  + Q++R   L+ FK  
Sbjct: 238 LIQTFQDEHEDWSIIIFTSTCKTCQVLNMMLRRFNFPSVALHSMMKQKARFAALAKFKSS 297

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             ++++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G A TLV + DI
Sbjct: 298 VYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRDGIAITLVTQYDI 357

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
             + AIE+ I+ K+     D S     + KI + Q N  R+   I  ++T FD +K+
Sbjct: 358 HLLHAIEEEIKMKLK----DFSVEEATVLKI-LTQVNVVRRECEIKLEATDFDEKKE 409


>gi|256074313|ref|XP_002573470.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238658650|emb|CAZ29702.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 875

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 135/353 (38%), Positives = 201/353 (56%), Gaps = 14/353 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++ G    ++  +  + +  PTPIQ +  P+ L   D+ GIAQTG+GKTASF+LP + +
Sbjct: 79  FSEAGFPSYIMSVIKKSKWDSPTPIQCQGWPVALSGRDLVGIAQTGSGKTASFLLPAI-V 137

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             K +  ++    P  LIL PTRELA QV    E +  +     A L GG     Q + L
Sbjct: 138 HAKAQPSLKRGDGPIVLILVPTRELAQQVEKVAEDFCYSAGFKSACLYGGASRTGQAEAL 197

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  +V+I TPGR+LD        M     LV+DEADRMLDMGF P I+ + S V   RQ
Sbjct: 198 GQSPEVVIATPGRLLDFLESRHTNMRRCTYLVLDEADRMLDMGFEPSIRRVVSQVRPDRQ 257

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTP--SSTAETIEHCFVATYAQYSKKCALLQQ 237
           TL++SAT   E++ ++E+FL +  +I V +   S+     +H  +      S+K   L  
Sbjct: 258 TLMWSATWPREVKALAEDFLYDYIQINVGSTKLSANHNIRQHVEILN---ESEKFKRLLS 314

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL S D  +  ++F   KK    LC  L+ +GF   A+HG+  Q+ R + L    +  I 
Sbjct: 315 LLNSFDNAR-VLVFTETKKRTDELCQKLQDKGFDATAMHGDKHQKERDRAL----DSHIS 369

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           ++VA+D+A+RGLDI DV ++ N+D P++ E+YIHRIGRTGR+ + G A+T  +
Sbjct: 370 VLVATDVASRGLDINDVRYIINYDYPSQTEDYIHRIGRTGRSDKKGTAYTFFS 422


>gi|255553305|ref|XP_002517695.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223543327|gb|EEF44859.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 585

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 135/374 (36%), Positives = 210/374 (56%), Gaps = 22/374 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     ++  +   G V+PTPIQI+ +P++L   D+ GIA TG+GKT +FVLPM+T
Sbjct: 140 NFQDMRFPEPILKTLKAKGIVQPTPIQIQGLPVILSGRDMIGIAFTGSGKTLAFVLPMIT 199

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
           I  +    + +     P  LI+ P+RELA Q  +  E++           L   L +GG+
Sbjct: 200 IAFQEEIMMPIAPREGPFGLIICPSRELARQTYEVVEQFLIPTRRAGYPELRALLCVGGV 259

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + +++G  +++ TPGR+ D   + K+ ++N   L +DEADR++D+GF   I+ I
Sbjct: 260 DMRSQLEVVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREI 319

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q  +++ L  P  + VN   + A  ++      Y +   
Sbjct: 320 FSYFKAQRQTLLFSATMPTKVQNFAKSALVKP--VIVNVSRAGAANLDVIQEIEYVKQED 377

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K A L + L+   T    +IFC  K +V  +   L  +G  V AIHG  DQ  R   +S+
Sbjct: 378 KTAYLLKCLEK--TPPQVLIFCESKADVDKIHEYLLLKGVEVVAIHGGKDQEEREYAISS 435

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   +++A+D+ ++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 436 FKSGKKDVLIATDVVSKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 495

Query: 351 KE-------DIKHI 357
           K        D+KH+
Sbjct: 496 KNQSETTLLDLKHL 509


>gi|156053564|ref|XP_001592708.1| ATP-dependent RNA helicase DED1 [Sclerotinia sclerotiorum 1980]
 gi|160380639|sp|A7EJY3|DED1_SCLS1 RecName: Full=ATP-dependent RNA helicase ded1
 gi|154703410|gb|EDO03149.1| ATP-dependent RNA helicase DED1 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 678

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 132/343 (38%), Positives = 195/343 (56%), Gaps = 21/343 (6%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK------------- 65
           A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+   +             
Sbjct: 204 AHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPIPANAAGS 263

Query: 66  -GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
            GR R   P +LIL PTREL +Q+ D   K+     +   ++ GG    +Q +++ERG D
Sbjct: 264 FGRTRKAYPTSLILAPTRELVSQIFDESRKFAYRSWVRPCVVYGGADIGSQLRQMERGCD 323

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQT 180
           +L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P I+ I           RQT
Sbjct: 324 LLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPGVQNRQT 383

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT   ++Q ++ +FL++   + V    ST+E I       Y +   K ++L  +L 
Sbjct: 384 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQK--VEYVEDIDKRSVLLDILH 441

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       +IF   K+   +L   L  Q F   +IHG+  QR R + L  F+ G   ++V
Sbjct: 442 THGAGLT-LIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILV 500

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           A+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G
Sbjct: 501 ATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTG 543


>gi|196014693|ref|XP_002117205.1| DEAD box ATP-dependent RNA helicase [Trichoplax adhaerens]
 gi|190580170|gb|EDV20255.1| DEAD box ATP-dependent RNA helicase [Trichoplax adhaerens]
          Length = 401

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 209/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   +V  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L  
Sbjct: 30  FDQMGLKEDLVRGIYAYGFEKPSAIQQRSIKPIIEGRDVIAQAQSGTGKTATFSISVLQA 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    ++R  + LI+ PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 90  ID---TQLRETQALIMSPTRELAVQIQKVILALGDYMNVQCHACIGGTNVGEDIRKLDYG 146

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  +PGR+ D   R  L   +I++LV+DEAD ML+ GF   I ++   +P + Q +L
Sbjct: 147 QHIVSGSPGRVFDMIRRRNLRTRSIKMLVLDEADEMLNQGFKEQIYDVYRYLPPSTQVVL 206

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++ +++  F+  P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 207 LSATLPHDILEMTRKFMTEPMRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 265

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 266 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGASRVL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 322 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKSDDIRILRD 381

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  ++S L
Sbjct: 382 IEQYYSTQIDEMPMNVSDL 400


>gi|32352202|dbj|BAC78594.1| RNA helicase [Oryza sativa Japonica Group]
          Length = 408

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 131/346 (37%), Positives = 196/346 (56%), Gaps = 8/346 (2%)

Query: 16  VLDA--GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG----RAR 69
           VLD   G+ +P+PIQ    P +L   D  GIA TG+GKT +F +P L  + +      A+
Sbjct: 1   VLDCCKGFERPSPIQAYAWPYLLDGRDFIGIAATGSGKTIAFGVPALMHVRRKMGEKSAK 60

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
             +PR L+L PTRELA Q+AD   + G    ++   L GG     Q   L+ G D++I T
Sbjct: 61  KGVPRVLVLSPTRELAQQIADVLCEAGAPCGISSVCLYGGTSKGPQISALKSGVDIVIGT 120

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGR+ D    G   +N++  +V+DEADRMLDMGF P ++ I S     RQT++FSAT   
Sbjct: 121 PGRMKDLIEMGICRLNDVSFVVLDEADRMLDMGFEPEVRAILSQTASVRQTVMFSATWPP 180

Query: 190 ELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
            + ++++ F+  NP ++ + +    A       V      S+   L+  L +     +N 
Sbjct: 181 AVHQLAQEFMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRSRDSRLVALLDKYHKAQRNR 240

Query: 249 I-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
           + +F   K+    +   L+++G+S  ++HG+  Q  R K LS FKEG+  LM+A+D+A+R
Sbjct: 241 VLVFVLYKREATRVETMLQRRGWSAVSVHGDKAQHDRTKALSLFKEGSCPLMIATDVASR 300

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           GLDIPDV  V N+  P   E+Y+HRIGRTGRAG+ G A T   +E+
Sbjct: 301 GLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTFFTQEN 346


>gi|307721103|ref|YP_003892243.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979196|gb|ADN09231.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 415

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 134/366 (36%), Positives = 203/366 (55%), Gaps = 8/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  +   + D G+ KPTPIQ K IPLVL   DV   AQTG+GK+ASFVLP+L
Sbjct: 1   MPFSTLNLSSTLQKTLQDKGFKKPTPIQEKVIPLVLNNKDVIAQAQTGSGKSASFVLPLL 60

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQN 116
            +  + R  A+    + L+L PTREL  QVA+ FE++ K+      +  LIGG     Q 
Sbjct: 61  QLWSQKRDNAKKGKIKILVLTPTRELTLQVAEVFEEFSKDLAKKPQIVSLIGGESIGEQL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             +++G DVL+ T GR LD   + ++ ++++  LV+DEAD+ML+  F   +  +   +P 
Sbjct: 121 YNIQQGCDVLVATSGRFLDVLKKKQMNLSHLNYLVLDEADKMLNFDFTEELDLVLESLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT   ++  +    + NP  + +     T E I    +       K+  LL+
Sbjct: 181 KRQNLLFSATYPPKMLDLVSKIMSNPLHVTIEQ-KPTVENIRQRVIEV--DNEKRGPLLR 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL+ +   K  ++F   K+   N+     K G    + + +++Q  R   L  FKE  I
Sbjct: 238 HLLK-EHKYKRVLVFMANKRATDNIAEKFRKYGIEAASFNADLEQDIRNDTLQAFKEAKI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++ A+D+AARGLDI ++  + N+D+P    +YIHRIGRT RAG+ G+A + +  E  +H
Sbjct: 297 NVLFATDIAARGLDIDNIDCIINYDLPRSPADYIHRIGRTARAGKSGEAISFINHETQEH 356

Query: 357 IDAIEK 362
              IEK
Sbjct: 357 FKLIEK 362


>gi|221056985|ref|XP_002259630.1| snrnp protein [Plasmodium knowlesi strain H]
 gi|193809702|emb|CAQ40404.1| snrnp protein, putative [Plasmodium knowlesi strain H]
          Length = 1001

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/380 (35%), Positives = 205/380 (53%), Gaps = 33/380 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  LS  ++ A+  A Y KPTPIQ++ IP+ L+  D+ GIA+TG+GKTA+FVLPML+ 
Sbjct: 578 WEESNLSSDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSY 637

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +++            P  LI+ P+RELA Q+ D   K+    +     ++GG   E Q  
Sbjct: 638 VKQLPPLTYETSQDGPYALIIAPSRELAIQIFDETNKFASYCSCRTVAVVGGRNAEEQAF 697

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L +G +++I TPGRI D   +   ++N    +++DEADRM+DMGF   +  I   +P +
Sbjct: 698 ELRKGVEIIIGTPGRIQDCLEKAYTVLNQCNYVILDEADRMMDMGFEDSVHFILDKIPTS 757

Query: 178 ------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
                                   R T +FSATM   ++++S  +L+ P  I +  P + 
Sbjct: 758 NLKSEDEALALQEEMMAKAGHRLYRLTQMFSATMPPAVERLSRKYLRAPAYISIGDPGAG 817

Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
             +IE      +    KK   LQ++L+  +     I+F NQKK    +  S+ K  F   
Sbjct: 818 KRSIEQKL--EFITEGKKKQKLQEVLEVYEPPI--IVFVNQKKVADIIAKSISKMKFRAV 873

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
           A+HG   Q  R + L++FK G   ++VA+D+A RG+D+  V  V NFD+P   E+Y HRI
Sbjct: 874 ALHGGKAQELREQTLNSFKNGDFDILVATDVAGRGIDVQGVKLVINFDMPKDIESYTHRI 933

Query: 334 GRTGRAGRHGKAFTLVAKED 353
           GRTGRAG  G A + V ++D
Sbjct: 934 GRTGRAGMKGLAISFVTEQD 953


>gi|237798217|ref|ZP_04586678.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021069|gb|EGI01126.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 459

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 219/373 (58%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++  N+ V  L GG+ F  Q   LE 
Sbjct: 66  INP---RFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQTPQRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F+++P+ ++V    + ++ IE  F     +   + A+++ +   
Sbjct: 183 LFSATYPVGIKQLSSKFMRDPQTVKVEALHADSQ-IEQIFYEISPEQRLE-AVVKVIGHF 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T  + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 241 RPT--SCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 299 TDVAARGLDIDALDMVLNVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 358

Query: 362 KLIEKKVDWLNGD 374
           +L +  ++W   D
Sbjct: 359 ELQKAPLNWQQYD 371


>gi|213967864|ref|ZP_03396010.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           T1]
 gi|213927207|gb|EEB60756.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           T1]
          Length = 473

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 135/377 (35%), Positives = 221/377 (58%), Gaps = 8/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 20  FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++  N+ V  L GG+ F  Q   LE 
Sbjct: 80  INP---RFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 137 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQTPQRRQTL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F+++P+ ++V    + ++ IE  F     +   + A+++ L   
Sbjct: 197 LFSATYPVGIKQLSSKFMRDPQTVKVEALHADSQ-IEQIFYEISPEQRLE-AVVKVLGHF 254

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T  + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 255 RPT--SCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 313 TDVAARGLDIDALDMVLNVELARDSEIHIHRVGRTGRAGETGIAVSLVAPSESQRARAIE 372

Query: 362 KLIEKKVDWLNGDLSSL 378
           +L +  ++W   D  S+
Sbjct: 373 ELQKAPLNWQQYDSLSI 389


>gi|50555013|ref|XP_504915.1| YALI0F02695p [Yarrowia lipolytica]
 gi|74632960|sp|Q6C347|FAL1_YARLI RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49650785|emb|CAG77720.1| YALI0F02695p [Yarrowia lipolytica]
          Length = 397

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 201/370 (54%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+  P+ IQ + I  +++  D    AQ+GTGKTA+F + ML +
Sbjct: 26  FESMDLKDDLLRGIYAYGFEAPSAIQSRAITQIIKGRDTIAQAQSGTGKTATFSISMLEV 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    + R  + ++L PTRELA Q+       G   N+     IGG       KKLE G
Sbjct: 86  ID---TKHRETQAMVLSPTRELATQIQSVILALGDYMNVQCHACIGGTSLSVDMKKLEAG 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR LD   +G L   N+++L++DEAD +L+ GF   I +I   +P   Q ++
Sbjct: 143 QQVVSGTPGRCLDMIKKGCLRTKNLKMLILDEADELLNKGFQEQIYDIYRYLPAATQVVV 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+   + +++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 203 VSATLPHSVLEMTSKFMTDPVRILVKRDELTLEGLKQYFIAVEQEEWKFDTLCDLYDTL- 261

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN KK V  L   ++   F+VC++HG++ Q+ R  I++ F+ G  +++
Sbjct: 262 ----TITQAVIFCNTKKKVDWLTQQMKDNNFTVCSMHGDMAQKDRDSIMNEFRSGRSRVL 317

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A      +DI  +  
Sbjct: 318 ISTDVWARGIDVQQVSLVINYDLPPNRENYIHRIGRSGRFGRKGVAINFATNDDITTLRD 377

Query: 360 IEKLIEKKVD 369
           IE+    ++D
Sbjct: 378 IEQYYSTQID 387


>gi|148271949|ref|YP_001221510.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147829879|emb|CAN00803.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 403

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/361 (36%), Positives = 197/361 (54%), Gaps = 10/361 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA LGL   +V  + + G   P PIQ  TIP VL   DV G  +TG+GKT +F  P++  
Sbjct: 20  FAALGLGQNIVRVLEELGAASPFPIQAATIPDVLAGRDVLGRGRTGSGKTIAFGAPLVER 79

Query: 62  ILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +LE    K R   R PR LIL PTRELA Q+    +   ++  L    + GG+P   Q  
Sbjct: 80  LLENDGAKNRKMGRKPRALILAPTRELAMQIDRTVQPIARSVGLFTTTIFGGVPQFKQVG 139

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+RG D+LI TPGR+ D  ++G+L ++ I + V+DEAD M D+GF+  +Q I   V   
Sbjct: 140 ALQRGVDILIATPGRLEDLIDQGRLDLSEIVVTVLDEADHMCDLGFLEPVQRILRQVKKD 199

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q LLFSAT+   +  +   FL NP   EV      + TI+H  +    +   K A+++Q
Sbjct: 200 GQRLLFSATLDKGVATLVNEFLPNPSVHEVAGEDQASSTIDHRVL--LIEQRDKAAIIEQ 257

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   +      +IF   +     L   LE  G    ++HG+++Q  R + L     G ++
Sbjct: 258 LSSGEGKT---LIFARTRAFAEQLADQLEDAGIPATSLHGDLNQARRTRNLQLLTSGKVR 314

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+ + D+G V   D P+  ++Y+HR GRTGRAG+ G   TL+ K   + +
Sbjct: 315 VLVATDVAARGIHVDDIGLVIQADAPDEYKSYLHRAGRTGRAGKQGTVVTLITKARRRRM 374

Query: 358 D 358
           D
Sbjct: 375 D 375


>gi|225680138|gb|EEH18422.1| ATP-dependent RNA helicase dbp10 [Paracoccidioides brasiliensis
           Pb03]
          Length = 934

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 135/391 (34%), Positives = 215/391 (54%), Gaps = 38/391 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPL+L   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 84  FQSMGLNATLLKAIARKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 143

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LI+ P+RELA Q     ++ G+  +L   LL+GG   E Q + +   
Sbjct: 144 LKSHSAKF-GARALIMSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFEYMSGN 202

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 203 PDIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFSAQLTEILHGLPSSRQTLL 262

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
           FSAT+   L + +   LQ P  I ++  S  +  +++ F +  +   K+ ALL  L    
Sbjct: 263 FSATLPKSLVEFARAGLQEPTLIRLDAESKISPDLQNGFFSIKSS-EKEGALLHLLHDII 321

Query: 239 -----------------------------LQSQD---TMKNGIIFCNQKKNVVNLCHSLE 266
                                        L+S     T  + IIF   K +V  L   L 
Sbjct: 322 KIPTGETEAGKRTKEELHNPKKRKRSDTVLKSHKESPTEHSTIIFTATKHHVDYLTSVLR 381

Query: 267 KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
           + GF+V   +G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D P+++
Sbjct: 382 QSGFAVSYAYGSLDQTARKIEVQNFRSGITHILVVTDVAARGIDIPILSNVINYDFPSQS 441

Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           + ++HR+GRT RAGR G +++L+ + D  ++
Sbjct: 442 KIFVHRVGRTARAGRTGWSYSLIRESDAPYL 472


>gi|149188012|ref|ZP_01866307.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           shilonii AK1]
 gi|148838000|gb|EDL54942.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           shilonii AK1]
          Length = 406

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 212/368 (57%), Gaps = 8/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L LS  ++ A+  + +   T IQ   IP ++ +HDV  +AQTG+GKT +F L ++
Sbjct: 1   MSFSELTLSSALIDAI-PSEFSHATHIQTLAIPAIIAQHDVLALAQTGSGKTLAFGLGLI 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +    + LIL PTRELA QV +  +        +VA++ GG   E Q  +L 
Sbjct: 60  EQLLNNEIK----QALILVPTRELAKQVTETIDPIVALLGYSVAVVCGGEDVEPQVGQLN 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++++ TPGR+LD  N+  +    IE +V+DE DR+LDMGF P IQ I + +   +QT
Sbjct: 116 AAPEIVVATPGRLLDIMNKQLVDTQRIETVVLDEVDRLLDMGFWPDIQRILNGLRHRKQT 175

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT++++L+      L NP R+  N  +S  E I         + SK   L++Q+ +
Sbjct: 176 LMFSATLSEQLEAKVTTLLNNPIRVVANKTNSVVEQIAETLYLVN-KGSKANVLIKQITE 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   + N   LC  L K G +  A+HGN +Q  R + L  FK+G IQ+++
Sbjct: 235 HQ--WPQVLVFIGARDNADALCKKLNKAGITSGALHGNKEQTERERTLQAFKQGEIQVLI 292

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+ + ++  V N+++P+    Y+HR+GRT RAG+ G+A +LV   + ++++AI
Sbjct: 293 ATDILARGIHVDNLPVVINYELPSDPSVYVHRVGRTARAGKTGQALSLVCHGETEYLEAI 352

Query: 361 EKLIEKKV 368
            +L  + +
Sbjct: 353 RQLTSRSL 360


>gi|85059773|ref|YP_455475.1| ATP-dependent RNA helicase SrmB [Sodalis glossinidius str.
           'morsitans']
 gi|84780293|dbj|BAE75070.1| ATP-dependent RNA helicase [Sodalis glossinidius str. 'morsitans']
          Length = 447

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 142/433 (32%), Positives = 235/433 (54%), Gaps = 16/433 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L   ++ A+ D G+ +PT IQ + IP  +   DV G A TGTGKTA+++LP+L  
Sbjct: 6   FSELELHEDLLAAISDKGFERPTAIQAEAIPAAMDGRDVLGSAPTGTGKTAAYLLPVLQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LI+ PTRELA QVA+  ++   + +L +A + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRVLIVTPTRELAMQVAEQAKQLAAHTHLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          +E L++DEADRMLDMGF   ++ I +   + +QTL
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFALDVEQIAAETRWRKQTL 185

Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  + ++  +   L +P  I+ +      + I   +       + K ALL +LL+
Sbjct: 186 LFSATLEGNAVKDFAGRLLNDPVEIDASPSRRERKKIVQWYYRA-DDLTHKTALLCKLLK 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   I+F  +++ +  +   L   G   C + G + Q  R + +    +G + ++V
Sbjct: 245 -QPEVSKAIVFVRKRERLHEVVGWLRDSGIPSCYLEGELVQAKRNEAIKRISDGRMNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+ HV NFD+P  A+ Y+HRIGRT RAGR G A +LV   D  H+   
Sbjct: 304 ATDVAARGLDIEDISHVINFDLPATADVYLHRIGRTARAGRKGCAISLVETHD--HL--- 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ---K 417
             L+ K   +LN  L +    ++++       A K +  P K     R++K   ++   K
Sbjct: 359 --LLGKISRYLNEPLKART--IDELRPTTRAPAEKMSGKPSKKVLAKRKEKKEQARTKDK 414

Query: 418 SHIPLKESEKISK 430
           + + L++ + I K
Sbjct: 415 TKVRLRDKKNIGK 427


>gi|240282011|gb|EER45514.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           capsulatus H143]
          Length = 790

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 126/383 (32%), Positives = 204/383 (53%), Gaps = 33/383 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A+ GL  +++  V   GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L  
Sbjct: 350 WAESGLPKRLLSIVEQVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVY 409

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +       E    R   P  +IL PTRELA Q+    +K+       V  ++GG   E Q
Sbjct: 410 IAELPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAKKFSVPLGFNVVSIVGGHSLEEQ 469

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  GA+++I TPGR++D   R  ++++    +++DEADRM+D+GF   +  I   +P
Sbjct: 470 AYSLRNGAEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDALP 529

Query: 176 FT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
            T                         RQT++++ATM   +++++  +L+ P  + +   
Sbjct: 530 VTNQKPDTEDAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNI 589

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               +T+E   V   +   K+   L ++L S++     I+F N K+N   +   ++  G+
Sbjct: 590 GEAVDTVEQR-VEFISGEDKRKKRLAEILSSREFRPPIIVFVNIKRNCDAVARDIKNMGY 648

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y 
Sbjct: 649 SSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYT 708

Query: 331 HRIGRTGRAGRHGKAFTLVAKED 353
           HRIGRTGRAG+ G A T +  ED
Sbjct: 709 HRIGRTGRAGKSGIAITFLGNED 731


>gi|238491382|ref|XP_002376928.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357]
 gi|220697341|gb|EED53682.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357]
          Length = 665

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 127/383 (33%), Positives = 206/383 (53%), Gaps = 33/383 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + GL  +++  V   GY +PTPIQ   IP+ +Q  D+ G+A TG+GKTASF+LP+L  
Sbjct: 250 WDESGLPKRLMELVNKVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTASFLLPLLVY 309

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +       E    +   P  ++L PTRELA Q+    +K+ +     V  ++GG  FE Q
Sbjct: 310 IAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEEQ 369

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +P
Sbjct: 370 AYSLRNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALP 429

Query: 176 FT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
            +                         RQT++++ATM   +++++  +L+ P  + + + 
Sbjct: 430 VSNEKPDSEEAENSMAMSQHIGTKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSA 489

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               +T+E   V   A   K+   L  +L S +     I+F N K+N   +   +++ GF
Sbjct: 490 GEAVDTVEQR-VEFIAGEDKRKKRLGDILSSGEFRPPIIVFVNIKRNCDAIAREIKQWGF 548

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y 
Sbjct: 549 SSVTLHGSKTQEQREAALASVRNGQTDVLVATDLAGRGIDVPDVSLVINFNMATTIESYT 608

Query: 331 HRIGRTGRAGRHGKAFTLVAKED 353
           HRIGRTGRAG+ G A T +  ED
Sbjct: 609 HRIGRTGRAGKSGVAITFLGNED 631


>gi|225558604|gb|EEH06888.1| ATP-dependent RNA helicase DBP10 [Ajellomyces capsulatus G186AR]
          Length = 940

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 136/391 (34%), Positives = 214/391 (54%), Gaps = 38/391 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL+  ++ A+   G+  PTPIQ KTIPLVL   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 90  FQSLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEK 149

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q + +   
Sbjct: 150 LKSHSAKF-GSRALILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMASN 208

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 209 PDIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFATQLTEILHGLPSSRQTLL 268

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ-- 240
           FSAT+   L + +   LQ P  I ++  S  +  +++ F  T     K+ ALL  L +  
Sbjct: 269 FSATLPKSLVEFARAGLQEPILIRLDAESKISPDLQNAFF-TVKSSEKEGALLHVLHEVI 327

Query: 241 ------------SQDTMKNG----------------------IIFCNQKKNVVNLCHSLE 266
                       +++ +K+                       IIF   K +V  L   L 
Sbjct: 328 KIPTGETEAHKRAKEEVKHSKKRKRSEVTSNSHKESPTEYSTIIFTATKHHVDYLTSILR 387

Query: 267 KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
             GF+V   +G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D P++ 
Sbjct: 388 TSGFAVSYAYGSLDQTARKIEVQNFRAGITHILVVTDVAARGIDIPILSNVINYDFPSQP 447

Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           + ++HR+GRT RAG+ G +++L+ + D  ++
Sbjct: 448 KIFVHRVGRTARAGKTGWSYSLIRESDTPYL 478


>gi|301772834|ref|XP_002921834.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic initiation factor
           4A-III-like [Ailuropoda melanoleuca]
          Length = 417

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 129/362 (35%), Positives = 202/362 (55%), Gaps = 11/362 (3%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  L+    +VR  + LIL 
Sbjct: 63  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD---IQVRETQALILA 119

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA Q+       G   N+     IGG       +KL+ G  V+  TPGR+ D   R
Sbjct: 120 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR 179

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
             L    I++LV+DEAD ML+ GF   I ++   +P   Q +L SAT+  E+ +++  F+
Sbjct: 180 RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFM 239

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
            +P RI V     T E I+  FVA   +   +   C L   L     T+   +IFCN K+
Sbjct: 240 TDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL-----TITQAVIFCNTKR 294

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
            V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  ++++++D+ ARGLD+P V  
Sbjct: 295 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 354

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
           + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE+    ++D +  +++
Sbjct: 355 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVA 414

Query: 377 SL 378
            L
Sbjct: 415 DL 416


>gi|302835956|ref|XP_002949539.1| hypothetical protein VOLCADRAFT_42311 [Volvox carteri f.
           nagariensis]
 gi|300265366|gb|EFJ49558.1| hypothetical protein VOLCADRAFT_42311 [Volvox carteri f.
           nagariensis]
          Length = 423

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 142/374 (37%), Positives = 215/374 (57%), Gaps = 11/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           DF  LGLS + +C V  + G   PT +Q   IP +LQ  DV G+AQTG+GKTA+F LP+L
Sbjct: 39  DFKSLGLS-EWLCGVCKSLGMNTPTEVQRGCIPAILQGRDVIGLAQTGSGKTAAFALPIL 97

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L K    V     L+L PTRELAAQ+ + F   G    L   ++IGG+  + Q ++L 
Sbjct: 98  QVLAKDPYGVF---ALVLTPTRELAAQICEQFRALGAGMRLKELVIIGGVDMQHQARELA 154

Query: 121 RGADVLICTPGRI---LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           R   V++ TPGR+   LD        ++    LV+DEADR+LD  F   ++ +   +   
Sbjct: 155 RRPHVVVATPGRLRGLLDADGGLSAGLSRTRFLVLDEADRVLDPTFEDDLRYVRFCLRQD 214

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALL 235
           RQTLLFSATMT  L  + +  LQ+    +      TA+ +  E+ F+    +      LL
Sbjct: 215 RQTLLFSATMTRSLIALQKASLQDAHVFQAYEGLRTADRLREEYLFLPAKVKEVYLHYLL 274

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             ++ ++  +++ IIFC+  +    L   LE+ G    A+H    Q++R+  L+ FK   
Sbjct: 275 TVVVPARK-VRSAIIFCSTCRGCHLLSVLLEELGLPAAALHSGKSQKARLSALARFKSEQ 333

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + L++A+D+A+RGLDIP V  V N+D+P  A +Y+HR+GRT RAGR G + +LV + D++
Sbjct: 334 VPLLLATDVASRGLDIPTVDLVVNYDLPVLARDYVHRVGRTARAGRSGWSLSLVTQYDVQ 393

Query: 356 HIDAIEKLIEKKVD 369
            + AIE+LI  K+D
Sbjct: 394 LVHAIEELIGHKLD 407


>gi|297201135|ref|ZP_06918532.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
 gi|197713661|gb|EDY57695.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 504

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 130/356 (36%), Positives = 191/356 (53%), Gaps = 5/356 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L  ++  A+L  G   P PIQ  T+P  L   DV G  +TG+GKT +F LP+L  
Sbjct: 81  FADLDLPERLQAALLAEGVTTPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLPLLAR 140

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  RA  R P  L+L PTRELA QV D    Y +   L  A ++GG+    Q   L  G
Sbjct: 141 LDGQRAEPRHPLALVLVPTRELAQQVTDALTPYARALRLRAATVVGGMSIGRQASALRAG 200

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+VL+ TPGR+ D   RG   ++ + + V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 201 AEVLVATPGRLKDLIERGDCSLSQVTMTVLDEADQMTDMGFMPQVTALLDQVRPDGQRML 260

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++  N+L +P    V+  + T  T++H  +  + +   K A   ++    
Sbjct: 261 FSATLDRNIDRLVRNYLHDPVVHSVDPSAGTVTTMDHHLL--HVRDDDKHATATEIAARD 318

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F + K     L   L   G    A+HG   Q  R + L  FK+G + ++VA+
Sbjct: 319 GRV---IMFLDTKHAAERLAKHLLSVGVRASALHGGKSQPQRTRTLGQFKDGQVTVLVAT 375

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++AARG+ + DV  V NFD P   ++Y+HR GRT RAG  G   TLV     + +D
Sbjct: 376 NVAARGIHVDDVDLVVNFDPPADHKDYLHRGGRTARAGESGTVVTLVLPHQRRSVD 431


>gi|156396703|ref|XP_001637532.1| predicted protein [Nematostella vectensis]
 gi|156224645|gb|EDO45469.1| predicted protein [Nematostella vectensis]
          Length = 700

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 128/356 (35%), Positives = 206/356 (57%), Gaps = 5/356 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  V   V+  GY  PTPIQ KT+PLV+   DV  +A+TG+GKTA+F++PM   
Sbjct: 21  FQSLGLSFPVFKGVMKKGYKVPTPIQRKTLPLVMDGKDVVAMARTGSGKTAAFLIPMFEK 80

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+V + R LIL PTRELA Q     ++ G+   L  ++++GG   E Q   +   
Sbjct: 81  LQTHTAKVGI-RALILSPTRELALQTQKFIKELGRFTGLKSSVILGGDSLEGQFAAIHTN 139

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR L      +L ++++E +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 140 PDIVVATPGRFLHVVMEMELKLSSVEYVVFDEADRLFEMGFAEQLHEIIHRLPESRQTLL 199

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQS 241
           FSAT+   L   ++  L +P  + ++  +  +E ++   +V +   Y+    LLQ +++ 
Sbjct: 200 FSATLPRLLVDFAKAGLCDPALVRLDVDTKLSEQLKVSDYVFSLELYTALMHLLQNVIKP 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     +IF   K +V  L   L   G     ++ ++DQ +R   +  F+     +MV 
Sbjct: 260 TE---QTLIFAATKHHVEYLKEMLLSGGIDCSYVYSSLDQTARTINVGKFQHKKTMVMVV 316

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +D+AARG+DIP + +V NF  P +A+ ++HR+GR  RAGR G A++LVA +++ H+
Sbjct: 317 TDVAARGIDIPMLDNVINFHFPPKAKLFVHRVGRVARAGRSGTAYSLVANDEVAHL 372


>gi|70733057|ref|YP_262830.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens Pf-5]
 gi|68347356|gb|AAY94962.1| ATP-independent RNA helicase DbpA [Pseudomonas fluorescens Pf-5]
          Length = 461

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 140/395 (35%), Positives = 222/395 (56%), Gaps = 18/395 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LSP ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 8   FNTLPLSPAMLANLDSLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  +   N+ V  L GG+ F  Q   LE 
Sbjct: 68  INP---RYFGCQALVICPTRELADQVAKEVRRLARAEDNIKVLTLCGGVSFGPQIASLEH 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  LV+DEADRMLDMGF   I++I    P  RQTL
Sbjct: 125 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLVLDEADRMLDMGFYDAIEDIIEKTPSRRQTL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           LFSAT    +++++  F+++P+ ++        + IE  F  ++   + S    +L    
Sbjct: 185 LFSATYPVGIKQLASKFMRDPQTVKAEAFHDDTQ-IEQRFYEISPEERMSAVTKVLHHFR 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +     + + FC  K+ V      L  +G S   +HG+++QR R ++L+ F   +  ++
Sbjct: 244 PA-----SCVAFCFTKQQVQETVDHLTAKGISAVGLHGDLEQRDRDQVLAMFANRSTSVL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  +     A
Sbjct: 299 VATDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSEAHRAQA 358

Query: 360 IEKLIEKKVDWLNGD-LSS-----LNPPLEKIDIA 388
           IE+L +  ++W   D L S     L PP+  + IA
Sbjct: 359 IEQLQKAPLNWDQVDNLKSQGGAPLQPPMSTLCIA 393


>gi|304415003|ref|ZP_07395797.1| ATP-dependent RNA helicase specific for 23S rRNA [Candidatus
           Regiella insecticola LSR1]
 gi|304283089|gb|EFL91508.1| ATP-dependent RNA helicase specific for 23S rRNA [Candidatus
           Regiella insecticola LSR1]
          Length = 464

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 140/371 (37%), Positives = 207/371 (55%), Gaps = 8/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L PK +  +   GY   TPIQ  T+P +L+  DV   A+TG+GKTA+F    + +
Sbjct: 7   FFPTTLPPKQLANLNALGYSSMTPIQAATLPAILKGKDVRAQAKTGSGKTAAF---GIGL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L+K      + + LIL PTRELA Q++    +  +   N+ +  L GG     Q   L  
Sbjct: 64  LDKIAVEQFVTQALILCPTRELADQISKELRRLARFTQNIKILTLCGGQSIGCQLYSLVH 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
               ++ TPGRI +H  +  L++ N+++LV+DEADRMLDMGF   I NI    P TRQTL
Sbjct: 124 APHFVVGTPGRIQEHLRKHTLVLTNLKVLVLDEADRMLDMGFNDAIDNIIDYAPKTRQTL 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D ++++S      P  + V +P      IE  F  +  +  K+  LL ++L+ 
Sbjct: 184 LFSATYPDSIEQISNRIQHQPLSVVV-SPQKNETAIEQLFYESTNE--KRLPLLIKILKH 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + ++FCN K +   L  +L+    SV A+HG++DQ  R ++   F   + +++VA
Sbjct: 241 YQP-DSCLVFCNTKLDCQRLYQALKSCQMSVLALHGDLDQHERDQVWVRFANHSCRILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V NF+V    E YIHRIGRTGRAG  G A TL   +++    AIE
Sbjct: 300 TDVAARGLDIKQLALVVNFEVAFDPEVYIHRIGRTGRAGIGGCAVTLCTPQEMHRALAIE 359

Query: 362 KLIEKKVDWLN 372
             ++ K+ WL+
Sbjct: 360 DYLQTKLTWLS 370


>gi|225559088|gb|EEH07371.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           capsulatus G186AR]
          Length = 805

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 126/383 (32%), Positives = 204/383 (53%), Gaps = 33/383 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A+ GL  +++  V   GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L  
Sbjct: 365 WAESGLPKRLLSIVEQVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVY 424

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +       E    R   P  +IL PTRELA Q+    +K+       V  ++GG   E Q
Sbjct: 425 IAELPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAKKFSVPLGFNVVSIVGGHSLEEQ 484

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  GA+++I TPGR++D   R  ++++    +++DEADRM+D+GF   +  I   +P
Sbjct: 485 AYSLRNGAEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDALP 544

Query: 176 FT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
            T                         RQT++++ATM   +++++  +L+ P  + +   
Sbjct: 545 VTNQKPDTEDAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNI 604

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               +T+E   V   +   K+   L ++L S++     I+F N K+N   +   ++  G+
Sbjct: 605 GEAVDTVEQR-VEFISGEDKRKKRLAEILSSREFRPPIIVFVNIKRNCDAVARDIKNMGY 663

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y 
Sbjct: 664 SSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYT 723

Query: 331 HRIGRTGRAGRHGKAFTLVAKED 353
           HRIGRTGRAG+ G A T +  ED
Sbjct: 724 HRIGRTGRAGKSGIAITFLGNED 746


>gi|10039329|dbj|BAB13307.1| vasa-related protein CnVAS1 [Hydra vulgaris]
          Length = 797

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 129/361 (35%), Positives = 207/361 (57%), Gaps = 14/361 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA+  +   ++  V  A Y+KPTP+Q   IP++    D+   AQTG+GKTA+F++P+L 
Sbjct: 354 EFAEANIDRTILENVEKAHYIKPTPVQKYAIPIITGNRDLMSCAQTGSGKTAAFLIPVLN 413

Query: 62  ILEKGRAR-------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            L + R+        V+ P  L++ PTRELA Q+     K+ +N ++   ++ GG+    
Sbjct: 414 TLMQFRSELTSSLSEVQAPLALVIAPTRELAVQIQKEARKFAQNTSIKPVVIYGGVQVAY 473

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +++++   +L+ TPGR+ D   + K+ + N++ L++DEADRMLDMGF+P I+ I +  
Sbjct: 474 HLRQVQQDCHLLVGTPGRLKDFLGKRKISLANLKYLILDEADRMLDMGFLPEIKAIINDF 533

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  R TL+FSAT   E+Q ++  FL N   + +     T   I  C +    + S 
Sbjct: 534 DMPPKEDRHTLMFSATFPTEIQNLAAEFLNNYVYLTIGKVGGTHSDITQCIMEV--EESA 591

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K   L ++L ++ T +N ++F   K+    L   L + GF   +IHG+  Q+ R + L+ 
Sbjct: 592 KRDKLIEILDTEGTNRN-LVFVQTKRLADFLASYLCQNGFHTTSIHGDRLQQQREEALAE 650

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK GT  +++A+ +AARGLDI DV  V N+D+P+  E YIHRIGRTGR G  GKA +   
Sbjct: 651 FKAGTQHVLIATAVAARGLDIADVKQVINYDLPDEIEEYIHRIGRTGRIGNKGKAISFFT 710

Query: 351 K 351
           +
Sbjct: 711 R 711


>gi|154299943|ref|XP_001550389.1| hypothetical protein BC1G_10862 [Botryotinia fuckeliana B05.10]
 gi|160380638|sp|A6SEH9|DED1_BOTFB RecName: Full=ATP-dependent RNA helicase ded1
 gi|150857142|gb|EDN32334.1| hypothetical protein BC1G_10862 [Botryotinia fuckeliana B05.10]
          Length = 683

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 132/343 (38%), Positives = 195/343 (56%), Gaps = 21/343 (6%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK------------- 65
           A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+   +             
Sbjct: 204 AHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPVPANAAGS 263

Query: 66  -GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
            GR R   P +LIL PTREL +Q+ D   K+     +   ++ GG    +Q +++ERG D
Sbjct: 264 FGRTRKAYPTSLILAPTRELVSQIYDESRKFAYRSWVRPCVVYGGADIGSQLRQMERGCD 323

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQT 180
           +L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P I+ I           RQT
Sbjct: 324 LLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPGVQNRQT 383

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT   ++Q ++ +FL++   + V    ST+E I       Y +   K ++L  +L 
Sbjct: 384 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQ--KVEYVEDIDKRSVLLDILH 441

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       +IF   K+   +L   L  Q F   +IHG+  QR R + L  F+ G   ++V
Sbjct: 442 THGAGLT-LIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILV 500

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           A+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G
Sbjct: 501 ATAVAARGLDIPNVKHVVNYDLPTDIDDYVHRIGRTGRAGNTG 543


>gi|58040739|ref|YP_192703.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58003153|gb|AAW62047.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 393

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 141/377 (37%), Positives = 215/377 (57%), Gaps = 14/377 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL   ++  +  AG+ +P+ IQ + IP +L+  DV   +QTG+GKTA+FVLPML  
Sbjct: 22  FEELGLIAPLLATLAQAGHKRPSLIQTQAIPPLLEGKDVLVGSQTGSGKTAAFVLPMLQK 81

Query: 63  L-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L E G A    PR LILEPTRELAAQ A    + G+  +L   ++ GG   E Q + +  
Sbjct: 82  LTEAGPAP--GPRALILEPTRELAAQTAAVCRQLGRRLSLKTRVICGGTSREQQVQSVSD 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----T 177
           G D+++ T GR+LD   +  L++ ++  LV+DEADR+LD  F     ++T+L P+     
Sbjct: 140 GVDIIVATHGRLLDLVMQADLVLEHLTYLVLDEADRLLDEDFS---ASMTALTPYFPDQP 196

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            QT+  SAT+ + +  +++   +NP R+E+   S T + I     A + +   K   + +
Sbjct: 197 PQTVFCSATLPEPVMDLAKRVTRNPVRVEIAAESFTPKNIRQR--AIFVEKDDKPETVAR 254

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+  +     I+F   K  V  L  +L +    V  +HG+  Q +R K L  F++G I 
Sbjct: 255 LLKHFE--GRSIVFARTKNTVDALAKTLRRHNLRVETLHGDRTQGARNKALDLFRQGRIP 312

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLDIPDV  V N D+P   E Y+HRIGRT RAGR G AF+L+  ++   +
Sbjct: 313 VLVTTDIASRGLDIPDVDLVINMDMPETPEAYVHRIGRTARAGRKGVAFSLINIDERTFL 372

Query: 358 DAIEKLIEKKVDWLNGD 374
             +EK I  +V     D
Sbjct: 373 RDVEKHIGYRVRIATED 389


>gi|325088148|gb|EGC41458.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           capsulatus H88]
          Length = 805

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 126/383 (32%), Positives = 204/383 (53%), Gaps = 33/383 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A+ GL  +++  V   GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L  
Sbjct: 365 WAESGLPKRLLSIVEQVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVY 424

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +       E    R   P  +IL PTRELA Q+    +K+       V  ++GG   E Q
Sbjct: 425 IAELPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAKKFSVPLGFNVVSIVGGHSLEEQ 484

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  GA+++I TPGR++D   R  ++++    +++DEADRM+D+GF   +  I   +P
Sbjct: 485 AYSLRNGAEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDALP 544

Query: 176 FT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
            T                         RQT++++ATM   +++++  +L+ P  + +   
Sbjct: 545 VTNQKPDTEDAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNI 604

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               +T+E   V   +   K+   L ++L S++     I+F N K+N   +   ++  G+
Sbjct: 605 GEAVDTVEQR-VEFISGEDKRKKRLAEILSSREFRPPIIVFVNIKRNCDAVARDIKNMGY 663

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y 
Sbjct: 664 SSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYT 723

Query: 331 HRIGRTGRAGRHGKAFTLVAKED 353
           HRIGRTGRAG+ G A T +  ED
Sbjct: 724 HRIGRTGRAGKSGIAITFLGNED 746


>gi|224284362|gb|ACN39916.1| unknown [Picea sitchensis]
          Length = 593

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 207/379 (54%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +   +  V+  +  AG+ +PT IQ +  P+ L+  D+ GIA+TG+GKT +++LP +  
Sbjct: 172 FREASFTDHVLRELERAGFSEPTAIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 231

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +  +   A    P  L+L PTRELA Q+     K+G +  +    + GG P   Q + L+
Sbjct: 232 INAQPHLAHGDGPIVLVLAPTRELAVQIQQESVKFGTSSKIKSTCIYGGAPKGPQIRDLQ 291

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I + +   RQT
Sbjct: 292 RGVEIVIATPGRLIDMLEARHTNLRRVTYLVLDEADRMLDMGFEPQIRKIITQIRPDRQT 351

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L +SAT   E++ ++  FL NP ++ + +    A       V   ++Y K   L++ L +
Sbjct: 352 LYWSATWPREVENLARQFLHNPYKVIIGSADLKANHAISQIVEVVSEYEKYPRLIKLLEE 411

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  +IF   KK    +   L   G+   +IHG+  Q  R  +L  FK G   +M 
Sbjct: 412 IMDGSRI-LIFMETKKGCDQVTKQLRMDGWPALSIHGDKSQAERDWVLGEFKAGKSPIMT 470

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+  V N+D P   E+Y+HRIGRTGRAG  G A++     + +    +
Sbjct: 471 ATDVAARGLDVKDIKCVINYDFPGSLEDYVHRIGRTGRAGAKGTAYSFFTAANGRFAREL 530

Query: 361 EKLIEKKVDWLNGDLSSLN 379
             ++++    +N +L+++ 
Sbjct: 531 VGILQEAGQRVNPELAAMT 549


>gi|51595988|ref|YP_070179.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis IP
           32953]
 gi|186895088|ref|YP_001872200.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis PB1/+]
 gi|51589270|emb|CAH20891.1| ATP-dependent RNA helicase [Yersinia pseudotuberculosis IP 32953]
 gi|186698114|gb|ACC88743.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           PB1/+]
          Length = 460

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 212/369 (57%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L  
Sbjct: 6   FSSLTLPAEQLSNLNELGYTEMTPVQAAVLPAILNGQDVRAKAKTGSGKTAAFGIGLLDK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           +  G     + + L+L PTRELA QV+    +  +   N+ +  L GG P   Q   L  
Sbjct: 66  IAVGEF---VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI +H  +  L+++ ++ LV+DEADRMLDMGF   I ++ +  P  RQTL
Sbjct: 123 APHIVVGTPGRIQEHLRKKTLVLDELKTLVLDEADRMLDMGFSDAIDDVIAYTPPQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S    + P  +EV   +     IE  F  T  +  K+  LL  +L S
Sbjct: 183 LFSATYPSGIEQISARVQRQPLNVEVGD-TDEEPAIEQVFFETTRE--KRLPLLISVL-S 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + ++FCN KK+  ++  SLE +G SV A+HG+++QR R ++L  F   + +++VA
Sbjct: 239 YYQPASCVVFCNTKKDCQSVYESLESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V NF++    E ++HRIGRTGRAG  G A +L   +++     IE
Sbjct: 299 TDVAARGLDIKDLELVINFELAFDPEIHVHRIGRTGRAGMSGLAVSLCTPQEMVRAHTIE 358

Query: 362 KLIEKKVDW 370
             ++ K+ W
Sbjct: 359 DYLQIKLKW 367


>gi|51244750|ref|YP_064634.1| ATP-dependent RNA helicase (RhlE) [Desulfotalea psychrophila LSv54]
 gi|50875787|emb|CAG35627.1| related to ATP-dependent RNA helicase (RhlE) [Desulfotalea
           psychrophila LSv54]
          Length = 498

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 131/373 (35%), Positives = 215/373 (57%), Gaps = 9/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   ++  + D  +   TPIQ +++  VL   D+ G A TGTGKTA F++ ++  
Sbjct: 96  FHDFAIPLPLMHGIADLKFEYCTPIQEQSLEAVLAGKDLIGKANTGTGKTAVFLVGVMAR 155

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   +KG    R PR LIL PTREL  Q+  + +K G+   +    + GG  +E Q + L
Sbjct: 156 LLADKKGGLGKRTPRALILAPTRELVMQIVKDAKKLGRYTGVNADAVYGGAEYEKQMELL 215

Query: 120 ERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176
           +RG  D+++ TPGR++D  N+  +  +N + LVIDEADRMLDMGFIP ++ I S +P   
Sbjct: 216 KRGKTDIVVATPGRLIDFHNKRLVNFDNCQTLVIDEADRMLDMGFIPDVRRIVSWMPKKR 275

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL+FSAT++ ++  +S  +  +P+ +E      T +T+E       A+  +K  +L 
Sbjct: 276 DRQTLMFSATISSDVNNLSAQWCVDPEVVEAEADQVTTDTVEQKVYLVTAE--EKYNVLY 333

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ +++ +  +IF N K     L   L++       + G++ Q  R   L +F+ G +
Sbjct: 334 NLIK-ENSDERIMIFANMKSETRKLADRLKRNSIDCLLLSGDVPQNKRQSRLESFRTGKV 392

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+A RG+ I  + +V N+ +P   E+Y+HRIGRTGRAG  GK+ +   +E   +
Sbjct: 393 KVLVATDVAGRGIHIDGISYVVNYTLPYEPEDYVHRIGRTGRAGLAGKSVSFACEEGSFY 452

Query: 357 IDAIEKLIEKKVD 369
           +  IE+ I  K+D
Sbjct: 453 LPDIEEYIGAKLD 465


>gi|156554532|ref|XP_001605403.1| PREDICTED: similar to LOC556764 protein, partial [Nasonia
           vitripennis]
          Length = 595

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 126/353 (35%), Positives = 201/353 (56%), Gaps = 11/353 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + G    V+  +    + +PT IQ +  P+ L   D+ GIA TG+GKT S++LP +  
Sbjct: 160 FEEAGFPEYVMREIKRQNFKEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPAIVH 219

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +  +    R   P  L+L PTRELA Q+    + +G +  +    L GG P  +Q + L+
Sbjct: 220 INSQPKLCRKDGPIALVLAPTRELAQQIQQVADDFGHSSGIKNTCLYGGAPKGSQARDLD 279

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G +++I TPGR+LD    G+  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 280 NGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT 339

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALL 235
           L++SAT   E++ ++E FL++  +I V +   +A     + I+ C    Y +  K   LL
Sbjct: 340 LMWSATWPKEVKNLAEEFLKDYAQINVGSLQLSANHNILQIIDVC--QEYEKEIKLSTLL 397

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++++  ++     I+F   K+ V  +   +++ G+    IHG+  Q+ R  +L +F+ G 
Sbjct: 398 KEIMAEKEN--KTIVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWVLQDFRSGK 455

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             ++VA+D+AARGLD+ DV  V NFD P+ +E+Y+HRIGRTGR  + G A+T 
Sbjct: 456 APILVATDVAARGLDVEDVKFVINFDYPSCSEDYVHRIGRTGRRQKTGTAYTF 508


>gi|325972264|ref|YP_004248455.1| DEAD/DEAH box helicase [Spirochaeta sp. Buddy]
 gi|324027502|gb|ADY14261.1| DEAD/DEAH box helicase domain protein [Spirochaeta sp. Buddy]
          Length = 378

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 136/365 (37%), Positives = 213/365 (58%), Gaps = 9/365 (2%)

Query: 1   MDFADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M F  LG+S + +CAVL       P PIQ + IP VL + DV GIA+TG+GKT S+VLP+
Sbjct: 1   MPFTSLGIS-ESLCAVLQRENITTPYPIQTEVIPAVLSKRDVLGIAKTGSGKTLSYVLPI 59

Query: 60  LT-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQN 116
           L  I +K   + R  + L++ PTRELAAQV   F +Y     L +  L   GG+    Q 
Sbjct: 60  LMNIQKKVVLKSRHIQVLVMVPTRELAAQVHSVFSQYIHESGLRIKTLAAFGGVSINPQM 119

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             +     +L+ TPGR+L+  +   + ++++E++V+DEAD+ML +GF   +  + +L+P 
Sbjct: 120 MAMN-NVSILVATPGRLLELVSLHAVNLSSVEMVVLDEADKMLTVGFEKEMDQVFALLPE 178

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT+ D++Q + +  L +P  I++   S   + I     A +    +K  LL+
Sbjct: 179 KRQNLLFSATLNDQIQSLEKVLLHDPLVIKIEEESDALDYIHQS--AYFIPEEQKGPLLR 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++SQD M+  ++F +       +   L+K G    +IH    Q +R ++L +FK G +
Sbjct: 237 YLIKSQD-MQQVLVFTSSVARADRVVEKLQKNGIEARSIHSKKTQGARTELLRDFKLGYL 295

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++V +DL +RG+DI  +  V N+++P    N+IHRIGRTGRA R G+A TLV+  +  H
Sbjct: 296 RVLVTTDLLSRGIDIEFLPFVINYELPRSPINFIHRIGRTGRAERFGEAITLVSPSEEAH 355

Query: 357 IDAIE 361
              IE
Sbjct: 356 FKVIE 360


>gi|115533224|ref|NP_001041134.1| hypothetical protein F58E10.3 [Caenorhabditis elegans]
 gi|3877954|emb|CAB04518.1| C. elegans protein F58E10.3a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 561

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 138/404 (34%), Positives = 213/404 (52%), Gaps = 14/404 (3%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG--R 67
           P  +  +L   + KPT IQ  + P+ +   D+  IA+TG+GKT +F+LP L  + K   R
Sbjct: 138 PGQIHELLYGKFQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHR 197

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
            R   P  L+L PTRELA QV +    +  +  L +  L GG     Q + LERG D+++
Sbjct: 198 QRGEGPAVLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLERGVDIVV 257

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+LD  + G   M     LV+DEADRMLDMGF P I+ I   +   RQTL+FSAT 
Sbjct: 258 ATPGRLLDFLDNGTTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIRPDRQTLMFSATW 317

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL--LQSQDTM 245
             E++ ++ +F ++   + V +    A       V    +++K+  L++ L  + +Q   
Sbjct: 318 PKEVRALASDFQKDAAFLNVGSLELAANHNITQVVDILEEHAKQAKLMELLNHIMNQKEC 377

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
           K  IIF   K+    L  ++ + G+    IHG+ +Q  R  +L  FK G   +M+A+D+A
Sbjct: 378 KT-IIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVA 436

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARGLD+ D+  V N+D PN +E+Y+HRIGRTGR+ + G A+T     +      + K++ 
Sbjct: 437 ARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASKAKDLLKVL- 495

Query: 366 KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
                   D +    P    D+A  ++   N+       GF +R
Sbjct: 496 --------DEAKQTVPQALRDMANRSYGGSNSRGRYGGGGFQKR 531


>gi|46124853|ref|XP_386980.1| hypothetical protein FG06804.1 [Gibberella zeae PH-1]
 gi|91206556|sp|Q4I7K4|DED1_GIBZE RecName: Full=ATP-dependent RNA helicase DED1
          Length = 675

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 136/347 (39%), Positives = 196/347 (56%), Gaps = 25/347 (7%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--------------ILE 64
           A Y  PTP+Q  +IP+V    D+   AQTG+GKT  F+ P+L+                +
Sbjct: 204 AHYKVPTPVQKYSIPIVSGGRDLMACAQTGSGKTGGFLFPILSQAFINGPSAVPANAAGQ 263

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
            GR R   P +LIL PTREL +Q+ D   K+     +   ++ GG    +Q +++ERG D
Sbjct: 264 FGRQRKAYPTSLILAPTRELVSQIFDESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 323

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----RQT 180
           +L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P I+ I           RQT
Sbjct: 324 LLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPQVQDRQT 383

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT   ++Q ++ +FL++   + V    ST+E I       Y +   K ++L  +L 
Sbjct: 384 LMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQ--KVEYVEDVDKRSVLLDILH 441

Query: 241 SQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           S     NG  +IF   K+   +L   L  Q F   +IHG+  QR R + L  F+ G   +
Sbjct: 442 SH---ANGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEFFRNGRCPI 498

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           +VA+ +AARGLDIP V HV N+D+P   ++Y+HRIGRTGRAG  G A
Sbjct: 499 LVATAVAARGLDIPHVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIA 545


>gi|168065191|ref|XP_001784538.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663919|gb|EDQ50659.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 748

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 126/356 (35%), Positives = 212/356 (59%), Gaps = 3/356 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  V  AV   GY  PTPIQ KT+PL+L  +DV  +A+TG+GKTA+F++PM+  
Sbjct: 9   FETLGLSLPVFRAVKRKGYRIPTPIQRKTLPLILAGYDVVAMARTGSGKTAAFLIPMIEK 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +  +     R +IL P+RELA Q     ++  K  +L +A+L+GG   EAQ ++L   
Sbjct: 69  LVE-HSNNAGARAVILSPSRELALQTFKFCKELSKYTDLKIAILVGGDSMEAQFEQLAGN 127

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR++ H +  + + +  +E +V DEADR+ +MGF   ++ I S +  +RQ L
Sbjct: 128 PDVIIATPGRLMHHLSEVEGMSLRTVEYIVFDEADRLFEMGFAEQLRQIMSHLGESRQVL 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L   ++  L++P  + ++  S  +  ++  F  T     K  AL+  + + 
Sbjct: 188 LFSATLPRLLADFAKAGLRDPHLVRLDVESRISPDLQLSFF-TVRHDEKPAALVHLVREV 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K +V  L   L+ +G  +  ++G++DQ +R   ++ F+ G  +L++ 
Sbjct: 247 IPAEQQTIVFVATKHHVEFLYELLKTEGIDISVVYGSMDQAARKIHIAKFRAGKTKLLLV 306

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +D+AARG+DIP + +V N+D P + + ++HR+GR  RAGR G +++ V  E++ ++
Sbjct: 307 TDVAARGIDIPLLDNVINYDFPPKPKLFVHRVGRAARAGRTGTSYSFVTSEEMPYV 362


>gi|219115677|ref|XP_002178634.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410369|gb|EEC50299.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 417

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 133/387 (34%), Positives = 219/387 (56%), Gaps = 23/387 (5%)

Query: 21  YVKPTPIQIKTIPLVLQ-----RHDVCGIAQTGTGKTASFVLPMLTILEKGRA--RVRMP 73
           + KP+PIQ ++ P++ Q     + D+ GIA+TG+GKT +F LP L+ + +  +  + R+P
Sbjct: 1   FDKPSPIQAQSWPILTQLNNGRKRDIVGIAETGSGKTLAFALPALSAMSEDTSTRKRRLP 60

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R L+L PTRELA Q  +  +++G   ++   ++ GG+P   Q  +L++G D ++ TPGRI
Sbjct: 61  RMLVLAPTRELAMQSDEVLKEFGAVVSIKSLVVYGGVPKYEQKNELKKGVDCVVATPGRI 120

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT---RQTLLFSATMTDE 190
            D        ++ ++ LV+DEADRMLDMGF   ++ I S        RQT +FSAT    
Sbjct: 121 KDLIQERACDLSAVDYLVLDEADRMLDMGFEEDVRFIISNCKSKEQGRQTAMFSATWPAA 180

Query: 191 LQKVSENFLQNPKRIEVNTPS---STAETIEHCFVAT--------YAQYSKKCALLQQLL 239
           +QK++ +++ +P R+ V   S   S    ++    A           +   + A L+ +L
Sbjct: 181 IQKIAMDYMVDPIRVYVGFESIVGSNGGGVDDSLSANKRVTQIVEVVEDRARDARLRDIL 240

Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +     ++   ++F   KK    L +SL K G+  C+IHGN  Q +R   L+ FK+G+  
Sbjct: 241 RKVHMKRDNRVLVFGLYKKEAERLEYSLRKDGWDCCSIHGNKTQVARTAALAQFKDGSCP 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L++A+D+AARGLDIP+V  V NF  P   E+Y+HRIGRTGRAG+ G ++T     D  H 
Sbjct: 301 LLIATDVAARGLDIPNVEAVINFTFPLTIEDYVHRIGRTGRAGKTGVSYTFFQPGDKSHA 360

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEK 384
             +++++++    +  DL      ++K
Sbjct: 361 GELQQVMKQAGQEIPEDLMKFGSTIKK 387


>gi|320583326|gb|EFW97541.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Pichia angusta
           DL-1]
          Length = 533

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 205/374 (54%), Gaps = 16/374 (4%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKG 66
           +SP ++  +   GY +PTPIQ   +P  L   D+ GIA+TG+GKT +F++P +  IL+  
Sbjct: 135 ISPLILQQLEALGYTEPTPIQRAAVPNGLTGRDLVGIAETGSGKTLAFLIPSVNYILQLP 194

Query: 67  R-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
           R  R   P  LIL PTRELA Q+   F K+  +    V  LIGG  ++   +KLERG +V
Sbjct: 195 RLGRFEGPYVLILVPTRELALQIEREFSKFA-SLGFDVISLIGGHSYDEHAEKLERGVEV 253

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--------- 176
           +I TPGR++D   +  + ++    LV+DEADRM+DMGF   +  I   +P          
Sbjct: 254 IIATPGRLVDCLEQQLVSLDRCFFLVMDEADRMIDMGFENDLNKILESLPDGSENPHYLG 313

Query: 177 ----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                R T++F+ATM  +++K+S  +L+NP  + V       +++    +       K+ 
Sbjct: 314 SGEPKRTTMMFTATMPPQIEKISAKYLKNPGTVMVGEVGGAVDSVRQEAIQVDDSDEKRL 373

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            +LQ++L         IIF N +K    +   LE+ GF+   +HG+  Q  R   +   K
Sbjct: 374 QMLQKVLTRGIYSPPIIIFVNFRKTCEMVAEFLEQLGFNAVTMHGSKTQEQREYAIQQIK 433

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG   ++VA+D+A RG+DIPDV  V NF +    E+Y HRIGRTGRAG+ G A T  +  
Sbjct: 434 EGRSDILVATDVAGRGIDIPDVSLVVNFQMAKNIEDYTHRIGRTGRAGKEGTAITFWSAA 493

Query: 353 DIKHIDAIEKLIEK 366
           D   +  ++++I K
Sbjct: 494 DADVLYNLKQMITK 507


>gi|310756760|gb|ADP20521.1| ATP-dependent RNA helicase DDX3X [Fukomys anselli]
          Length = 662

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 140/392 (35%), Positives = 217/392 (55%), Gaps = 25/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 182 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 242 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 301

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 302 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 361

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 362 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV- 420

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + +   K + L  LL +       ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 421 -WVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLFHEGYACTSIHGDRSQRD 479

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 480 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 539

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +     +     D ++ L+E K +   WL
Sbjct: 540 LATSFFNDRNGNITKDLLDLLVEAKQEVPSWL 571


>gi|315297174|gb|EFU56454.1| DEAD/DEAH box helicase [Escherichia coli MS 16-3]
          Length = 432

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 133/360 (36%), Positives = 209/360 (58%), Gaps = 8/360 (2%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84
           T +Q   +P +L   DV   A+TG+GKTA+F L +L  ++     +   + L+L PTREL
Sbjct: 2   TSVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID---VSLFQTQGLVLCPTREL 58

Query: 85  AAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           A QVA    +  +   N  +  L GG PF  Q   L+    +++ TPGR+LDH  +G + 
Sbjct: 59  ADQVAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVS 118

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT  + +  +S    ++P 
Sbjct: 119 LDALNTLVMDEADRMLDMGFSDAIDDVICFAPASRQTLLFSATWPEAIAAISGRVQRDPL 178

Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
            IE+++ +     IE  F  T ++   K  LLQ+LL S     + ++FCN KK+  ++C 
Sbjct: 179 AIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPSSCVVFCNTKKDCQSVCD 234

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
           +L + G S  ++HG+++QR R + L  F  G+ +++VA+D+AARGLDI  +  V NF++ 
Sbjct: 235 ALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELA 294

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
              E ++HRIGRT RAG  G A +  A E+ +  + I  +++ K++W     +S   PLE
Sbjct: 295 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVPLE 354


>gi|254242152|ref|ZP_04935474.1| hypothetical protein PA2G_02881 [Pseudomonas aeruginosa 2192]
 gi|126195530|gb|EAZ59593.1| hypothetical protein PA2G_02881 [Pseudomonas aeruginosa 2192]
          Length = 446

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 208/371 (56%), Gaps = 3/371 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ A+    + +PTP+Q   IP  L+ HD+   AQTG+GKTA+F+LP+L  
Sbjct: 7   FSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFLLPLLHR 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L        + R LIL PTRELA Q     E++ +   +   L+ GG  F+ Q  +L + 
Sbjct: 67  LLAEDKPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRKN 126

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +++I TPGR+L+  N G L + +IE+LV+DEADRMLDMGF   +  + +  P   QTLL
Sbjct: 127 PEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAELQTLL 186

Query: 183 FSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT +   L KV    L+ P+ + +N      E +    + T    + K  LLQ LL S
Sbjct: 187 FSATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVI-TADDVAHKEQLLQWLL-S 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +T    I+F N + +   L   L      V  +HG  DQ+ R   +   K+G ++++VA
Sbjct: 245 NETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKILVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + ++E
Sbjct: 305 TDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDWNLMSSVE 364

Query: 362 KLIEKKVDWLN 372
           + +++  +  N
Sbjct: 365 RYLKQNFERRN 375


>gi|308454438|ref|XP_003089847.1| hypothetical protein CRE_06212 [Caenorhabditis remanei]
 gi|308268147|gb|EFP12100.1| hypothetical protein CRE_06212 [Caenorhabditis remanei]
          Length = 820

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 135/363 (37%), Positives = 206/363 (56%), Gaps = 18/363 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  G++ K++  +    Y KPT IQ + IP ++   DV GIA+TG+GKT +F+LPM   
Sbjct: 148 WAQCGVNLKMMNVLKKYEYTKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRH 207

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +IL PTRELA Q      K+ K   L VA   GG+    Q 
Sbjct: 208 ILDQPELEEGDG----PIAVILAPTRELAMQTYKEANKFAKVLGLRVACTYGGVGISEQI 263

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
             L+RGA++++CTPGR++D    N GK+  +  +  LV+DEADRM D GF P I  + + 
Sbjct: 264 ADLKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNN 323

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST-AETIEHCFVATYAQYSKKC 232
           +   +QT+LFSAT    ++ ++   L+ P  I V   S   ++  ++  +    Q   K 
Sbjct: 324 IRPDKQTVLFSATFPRHMEALARKVLEKPVEILVGGKSVVCSDVTQNAVICEEHQKLLKL 383

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF-SVCAIHGNIDQRSRMKILSNF 291
             L  +   Q +    I+F ++++   ++   L K G+ SV  +HG IDQ  R   +++F
Sbjct: 384 LELLGMYYEQGS---SIVFVDKQEKADDIVDQLMKTGYNSVAPLHGGIDQHDRDSSIADF 440

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G I+++VA+ +AARGLD+ ++  V N+D PN  E+Y+HR+GRTGRAG+ G A+T V  
Sbjct: 441 KTGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGKKGYAYTFVLP 500

Query: 352 EDI 354
           E I
Sbjct: 501 EQI 503


>gi|256077147|ref|XP_002574869.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238660085|emb|CAZ31102.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 401

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 207/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+ +P+ IQ + I  +++  DV   AQ+GTGKTA+  + +L +
Sbjct: 30  FDSMCLRDDLLRGIYAYGFERPSAIQQRAIKQIVKGRDVIAQAQSGTGKTATLGISILQM 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    ++R  + L+L PTRELA+Q+       G   N+      GG       +KL+ G
Sbjct: 90  LD---TQLRETQALVLSPTRELASQIQKVILALGDYMNVQCHACYGGTNIGEDIRKLDYG 146

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    +++ V+DEAD MLD GF   I ++   +P   Q +L
Sbjct: 147 QHVISGTPGRVFDMIRRRSLRTRAVKLFVLDEADEMLDKGFKEQIYDVYRYLPPGTQVVL 206

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SATM  E+ +++  F+ NP RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 207 LSATMPHEILEMTSKFMTNPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 265

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + K  F+V ++HG++ Q+ R +I+ +F+ G  +++
Sbjct: 266 ----TVTQSVIFCNTKRKVAWLTEKMLKNNFTVASMHGDMVQKEREEIMKDFRAGDSRVL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +  
Sbjct: 322 ITTDLWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKTDDIKILRD 381

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  ++S L
Sbjct: 382 IEQYYSTQIDEMPMNVSDL 400


>gi|114682553|ref|XP_514711.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 isoform 6 [Pan
           troglodytes]
          Length = 827

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 138/394 (35%), Positives = 209/394 (53%), Gaps = 32/394 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 218 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 277

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 278 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEAD----------------------- 156
              D+LI TPGR++DH  N     +++IE+L++DEAD                       
Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADSPPVGTACPHAPTLWLLHLPFPQ 397

Query: 157 --------RMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN 208
                   RMLD  F   ++ I  +    RQT+LFSATMTDE++ ++   L+NP RI VN
Sbjct: 398 PGAISCPFRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVN 457

Query: 209 TPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
           + +  A  +   F+            +   L ++    + ++F   KK    +   L   
Sbjct: 458 SNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLM 517

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G  V  +HGN+ Q  R++ L  FK+  I ++VA+D+AARGLDI  V  V NF +PN  ++
Sbjct: 518 GLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKH 577

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           Y+HR+GRT RAGR G++ +LV +++ K +  I K
Sbjct: 578 YVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVK 611


>gi|82196760|sp|Q5U526|I4A3A_XENLA RecName: Full=Eukaryotic initiation factor 4A-III-A;
           Short=eIF-4A-III-A; Short=eIF4A-III-A; AltName:
           Full=ATP-dependent RNA helicase DDX48-A; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3-A; AltName:
           Full=DEAD box protein 48-A; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3 A
 gi|54311504|gb|AAH84859.1| Unknown (protein for MGC:85498) [Xenopus laevis]
          Length = 415

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 207/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 44  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQC 103

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 104 LD---IQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 160

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q  L
Sbjct: 161 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCL 220

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 221 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 279

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 280 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 335

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR G  G A   V  +DI+ +  
Sbjct: 336 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGGKGVAINFVKNDDIRILRD 395

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 396 IEQYYSTQIDEMPMNVADL 414


>gi|50557160|ref|XP_505988.1| YALI0F28391p [Yarrowia lipolytica]
 gi|74659615|sp|Q6C024|PRP28_YARLI RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|49651858|emb|CAG78800.1| YALI0F28391p [Yarrowia lipolytica]
          Length = 575

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 124/372 (33%), Positives = 207/372 (55%), Gaps = 26/372 (6%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK-----GRARVRMPR 74
           GY +PTPIQ   IP+ L   DV G+A+TG+GKTASF++P+++ + +      R++V  P 
Sbjct: 182 GYKEPTPIQRAAIPIALGIRDVIGVAETGSGKTASFLIPLISYICELPKLDERSKVNGPY 241

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            LIL PTRELA Q+ D   K+       V  ++GG   + Q   ++ GA++++ TPGR+L
Sbjct: 242 GLILAPTRELAMQIKDEAVKFCAPLGFKVVSVVGGYSAQEQALAVQEGAELIVATPGRLL 301

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----------------- 177
           D  +R  L++N    +V+DEADRM+DMGF   +Q + + +P +                 
Sbjct: 302 DVIDRRLLVLNQCCYVVMDEADRMVDMGFEEQVQKVLASLPSSNAKPDSDEAENLAAVST 361

Query: 178 ---RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQT++++ATM   ++K+++ +L+ P  + + +      T+            +K  L
Sbjct: 362 RRYRQTMMYTATMPVAIEKLAKKYLRRPGIVTIGSAGQAGSTVTQLVEFLNTDEKRKRRL 421

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  ++  +      ++F N K++   +  +L   G+    IHG   Q  R + + + K G
Sbjct: 422 LD-IISKRQYRPPIVVFLNYKRDCEAVSDALVAAGWRTAIIHGGKQQEQREQAVQHLKRG 480

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+A RGLDIP+V  V NF + N  E+Y HRIGRTGRAG+ G A T + +ED 
Sbjct: 481 AVDVLVATDVAGRGLDIPNVSLVVNFQMANNIESYTHRIGRTGRAGKRGTAVTFLGQEDD 540

Query: 355 KHIDAIEKLIEK 366
             +  ++++I +
Sbjct: 541 DVLFELKQMISR 552


>gi|301166278|emb|CBW25853.1| putative ATP-dependent RNA helicase [Bacteriovorax marinus SJ]
          Length = 654

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 132/365 (36%), Positives = 211/365 (57%), Gaps = 6/365 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L P+++ A+   G+ + + IQ  TI  +L++ D+  +A+TG+GKT SF +P++ 
Sbjct: 6   EFVEYNLQPELIKALNSHGFKEASEIQDLTIKPILEKKDIFALAETGSGKTGSFAIPIME 65

Query: 62  ILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           IL + +A +  P  + +IL PTRELA Q    FE+ G    +  + +IGG   E Q ++L
Sbjct: 66  ILLEEKA-LDNPSQQIVILSPTRELAQQTNKFFEQVGAELGIKSSCIIGGEKIEKQIEEL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  VL+ TPGR+ D   + ++ + N   +V DEADR+ DMGF   I+ I + +P TRQ
Sbjct: 125 KEGVHVLVATPGRLNDLTKQKEIDLANCLAVVFDEADRLFDMGFKKDIEFILNGIPKTRQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++ SAT   ++   +  F   P  I++N  S   + I+H  +A   +  K   L++QL 
Sbjct: 185 LIMVSATTNMDVLNTAFKFGSQPLEIKLNEESILVDNIDHK-IAMIDKNEKMPLLVKQLQ 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +D     IIFCN +     +   L+K  F    I G + Q  R +++  F+     ++
Sbjct: 244 THEDAY--AIIFCNTQFQTHLVAEWLKKMNFKAKPISGRMPQNKRTRLMEEFRSKETTIL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+AARGLDI DV  V NFD+PN A +Y+HRIGRTGRAG+ G+A +  + ED +++D 
Sbjct: 302 VCTDVAARGLDIKDVNLVINFDLPNEAASYVHRIGRTGRAGKDGQAISFCSFEDCENLDP 361

Query: 360 IEKLI 364
           I + I
Sbjct: 362 ISEFI 366


>gi|225446899|ref|XP_002284103.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 666

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 222/376 (59%), Gaps = 10/376 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++ + LG++ ++V A+ + G  K  PIQ   +   +Q  D+ G A+TGTGKT +F +P++
Sbjct: 115 LEISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIM 174

Query: 61  TILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             + +  A   R R P  L+L PTRELA QV   F +   N  L    + GG P   Q  
Sbjct: 175 DKVIQYNAKHGRGRNPLALVLAPTRELARQVEKEFCESAPN--LDTLCVYGGTPISRQMN 232

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G DV++ TPGRI+D   RG L ++ ++ +V+DEAD+ML +GF   ++ I   +P  
Sbjct: 233 SLDYGVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQN 292

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALL 235
           RQ+++FSATM   ++K+++ +L+NP  I++  ++    AE I    +A+  +  +K +++
Sbjct: 293 RQSMMFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIAS--EMYEKASIV 350

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+         I+F   K++   L +++ +  F   A+HG+I Q  R + LS F++G 
Sbjct: 351 GPLITEHAKGGKCIVFTQTKRDADRLAYAMARN-FRCEALHGDISQSQRERTLSGFRDGH 409

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+D+AARGLDIP+V  + ++++PN +E ++HR GRTGRAG+ G A  + A++  +
Sbjct: 410 FNVLVATDVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQAR 469

Query: 356 HIDAIEKLIEKKVDWL 371
            +  IE+ I  K   L
Sbjct: 470 TVRFIERDIGCKFSEL 485


>gi|104783928|ref|YP_610426.1| ATP-dependent RNA helicase DbpA [Pseudomonas entomophila L48]
 gi|95112915|emb|CAK17643.1| ATP-dependent RNA helicase [Pseudomonas entomophila L48]
          Length = 461

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 219/370 (59%), Gaps = 10/370 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA L LS  ++ A LDA GY   TPIQ +++P++L+  D+   A+TG+GKTA+F + +L 
Sbjct: 8   FATLPLSAAML-ANLDALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            +     R    + L+L PTRELA QVA    +  +   N+ +  L GG+    Q   LE
Sbjct: 67  PINP---RYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLE 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRI  H ++G L+++ +  LV+DEADRMLDMGF   I +I    P  RQT
Sbjct: 124 HGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++++++F++ P++++V    S ++ IE  F+    Q  ++   + ++L 
Sbjct: 184 LLFSATYPAGIEQLAKDFMRQPQQVKVEALHSDSQ-IEQRFIEIDPQ--QRLEAVTRVL- 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ + FC  K+   +L   L  +G    A+HG+++QR R ++L+ F   +  ++V
Sbjct: 240 GHYRPQSCVAFCFTKQQCEDLVTHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N ++   AE ++HR+GRTGRAG  G A +LVA  +     AI
Sbjct: 300 ATDVAARGLDIDGLDLVINVELARDAEIHVHRVGRTGRAGEKGVAISLVAPAEGHRAQAI 359

Query: 361 EKLIEKKVDW 370
           E L  K + W
Sbjct: 360 EDLQNKPLRW 369


>gi|327353326|gb|EGE82183.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 945

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 136/391 (34%), Positives = 214/391 (54%), Gaps = 38/391 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPL+L   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 88  FQSMGLNATLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 147

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q + +   
Sbjct: 148 LKNHSAKF-GSRALILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMAGN 206

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 207 PDIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPSSRQTLL 266

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ-- 240
           FSAT+   L + +   LQ P  I ++  S  +  +++ F  T     K+ ALL  L +  
Sbjct: 267 FSATLPKSLVEFARAGLQEPTLIRLDAESKISPDLQNAFF-TVKSSEKEGALLHLLHEVI 325

Query: 241 ------------SQDTMKN----------------------GIIFCNQKKNVVNLCHSLE 266
                       +++  KN                       IIF   K +V  L   L 
Sbjct: 326 KIPTGETEAHKRAKEEAKNPKKRKRSEFASNSHKESPTEHSTIIFTATKHHVDYLVSILR 385

Query: 267 KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
             GF+V   +G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D P++A
Sbjct: 386 ISGFAVSYAYGSLDQTARKIEVQNFRSGITHILVVTDVAARGIDIPILFNVINYDFPSQA 445

Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           + ++HR+GRT RAG+ G +++L+ + D  ++
Sbjct: 446 KIFVHRVGRTARAGKTGWSYSLIRESDAPYL 476


>gi|291165177|gb|ADD81193.1| vasa [Auxis rochei]
          Length = 627

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 132/359 (36%), Positives = 206/359 (57%), Gaps = 14/359 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 193 MTFDEAALCESLRKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 252

Query: 61  T-ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G A  R      P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 253 QQLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGH 312

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q +++ RG +V+  TPGR+LD   RGK+ +  +  LV+DEADRMLDMGF P ++ +    
Sbjct: 313 QIREISRGCNVVCGTPGRLLDMIGRGKVGLTKLRYLVLDEADRMLDMGFEPDMRRLVGSP 372

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +++Q+++ +FL+     + V         +E  F+    ++S
Sbjct: 373 GMPSKENRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQV-TKFS 431

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL  LL++  T +  ++F   K+    +   L ++     +IHG+ +QR R + L+
Sbjct: 432 KREQLLD-LLKTTGTERT-MVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALA 489

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +F+ G   ++VA+ +AARGLDIPDV HV NFD+PN  + Y+HRIGRTGR G  G+A + 
Sbjct: 490 DFRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSF 548


>gi|261193383|ref|XP_002623097.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis
           SLH14081]
 gi|239588702|gb|EEQ71345.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis
           SLH14081]
          Length = 945

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 136/391 (34%), Positives = 214/391 (54%), Gaps = 38/391 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPL+L   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 88  FQSMGLNATLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 147

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q + +   
Sbjct: 148 LKNHSAKF-GSRALILLPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMAGN 206

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 207 PDIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPSSRQTLL 266

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ-- 240
           FSAT+   L + +   LQ P  I ++  S  +  +++ F  T     K+ ALL  L +  
Sbjct: 267 FSATLPKSLVEFARAGLQEPTLIRLDAESKISPDLQNAFF-TVKSSEKEGALLHLLHEVI 325

Query: 241 ------------SQDTMKN----------------------GIIFCNQKKNVVNLCHSLE 266
                       +++  KN                       IIF   K +V  L   L 
Sbjct: 326 KIPTGETEAHKRAKEEAKNPRKRKRSEFASNSHKESPTEHSTIIFTATKHHVDYLVSILR 385

Query: 267 KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
             GF+V   +G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D P++A
Sbjct: 386 ISGFAVSYAYGSLDQTARKIEVQNFRSGITHILVVTDVAARGIDIPILSNVINYDFPSQA 445

Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           + ++HR+GRT RAG+ G +++L+ + D  ++
Sbjct: 446 KIFVHRVGRTARAGKTGWSYSLIRESDAPYL 476


>gi|242012227|ref|XP_002426835.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212511048|gb|EEB14097.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 678

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 132/382 (34%), Positives = 212/382 (55%), Gaps = 9/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +      ++  +   G+  PTPIQ +  P+ L   D+ GIA+TG+GKT +++LP +  
Sbjct: 129 FQEANFPDYIMNVIRKQGFTVPTPIQAQGWPIALSGKDIVGIAKTGSGKTIAYMLPAIVH 188

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +   +  + +   P  LIL PTRELA Q+      +G+   +  + + GG P   Q + L
Sbjct: 189 IHN-QPPLELNDGPIALILAPTRELAQQIQSVANDFGEATRIRNSCIFGGAPKGPQFRDL 247

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G +++I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 248 ESGVEIVIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQ 307

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQL 238
            L++SAT   E++ ++E++L +   I++N  S       +   +    Q  +K   L+QL
Sbjct: 308 VLMWSATWPKEVRALAEDYLTD--YIQLNIGSLQLSANHNILQIVDVCQEHEKENKLRQL 365

Query: 239 LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L    + K    IIF   K+ V N+   L K G+   +IHG+ +Q+ R  +L+ F+ G  
Sbjct: 366 LHEIGSEKENKTIIFVETKRKVDNITQILRKDGWPALSIHGDKNQQERDHVLTQFRNGRA 425

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+ DV  V  FD P+  E+YIHRIGRTGR+ + G A+      ++KH
Sbjct: 426 SILVATDVAARGLDVEDVKFVIIFDYPSSLEDYIHRIGRTGRSEQTGTAYAFFTPHNVKH 485

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
            +A+  ++E+    +N  L  +
Sbjct: 486 ANALINVLEEADQIVNPKLVEM 507


>gi|327440903|dbj|BAK17268.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 436

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 145/438 (33%), Positives = 228/438 (52%), Gaps = 15/438 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D    P +  A+   G+ +PTPIQ + IPLVL+     G A TGTGKT SF+LP++  
Sbjct: 4   YTDYQFKPFLQDAIAKLGFTEPTPIQKEMIPLVLKGKSAIGQAHTGTGKTHSFLLPIVER 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + + +  V+    +I  PTRELA Q+ D   +  +   ++  L IGG   +    +L+  
Sbjct: 64  IVEEKQEVQ---AVITSPTRELAQQIFDALNQLVEGTEISTKLFIGGTDKQRTIDRLKTQ 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRI D      LL++   ILV+DEAD   DMGFI  I    S +P   +  +
Sbjct: 121 PQIVVGTPGRIKDLVKENALLVHTAPILVVDEADLAFDMGFIEDIDGFASHMPEKLEMFV 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++L+   + ++ +P  I +N     AE I+   V   ++ ++   LL+ +    
Sbjct: 181 FSATIPEKLKPFLKKYMDSPIHIHMNDKRPVAEGIDFVLVPVRSK-ARNTRLLEVIKGIN 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   +IFCN +KN  ++   L +QG     IHG++  R R K++   ++   Q +VA+
Sbjct: 240 PFL--AVIFCNTRKNAESVASFLAEQGIRAGQIHGDLSPRDRKKMMKQVRDLEFQYIVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARG+DI  + HV N+++P   E +IHR+GRT RAG  G A TL   ED   +  IEK
Sbjct: 298 DLAARGIDIQGISHVINYEIPEDLEFFIHRVGRTARAGSKGTAITLFQPEDEDAVVRIEK 357

Query: 363 L----IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           +    ++K  D  NG+ S L    ++   A     RK + I  K+    R+ K       
Sbjct: 358 MGIPFVQK--DIKNGEWSDLKDRHQR---ASRKGERKEDEIDAKAKALVRKPKKVKPGYK 412

Query: 419 HIPLKESEKISKLQQDIQ 436
                E EK+ K ++ I+
Sbjct: 413 RNMKWEMEKVKKRERRIK 430


>gi|260945385|ref|XP_002616990.1| hypothetical protein CLUG_02434 [Clavispora lusitaniae ATCC 42720]
 gi|238848844|gb|EEQ38308.1| hypothetical protein CLUG_02434 [Clavispora lusitaniae ATCC 42720]
          Length = 397

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 207/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P+++  +   G+  P+ IQ + I  ++   D    AQ+GTGKTA+F + ML  
Sbjct: 27  FESMKLKPELLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLQA 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+ +     G   N+     IGG       KKL +G
Sbjct: 87  ID---WNVRQCQALVLSPTRELAIQIHNVIRNLGTYMNIHTHACIGGKQVGDDLKKLNQG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+LD   R  L   N+++L++DEAD ++  GF   I  I   +P T Q ++
Sbjct: 144 QHIVSGTPGRVLDVIKRRNLATRNVQMLILDEADELMTKGFKEQIYEIYRHLPSTVQVVV 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+T E+ +++  F  +P +I V     T E I+   +    +   +   C L   L 
Sbjct: 204 VSATLTREVLEITSKFTTDPVKILVKKEDVTLEGIKQYHIQCEKEEWKFDTLCDLYDSL- 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K  V  L   L K  F+V ++HG++ Q  R  I+++F+ G  +++
Sbjct: 263 ----TITQAVIFCNTKSKVNWLADQLRKANFAVSSMHGDMKQEERDSIMNDFRTGNSRVL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENY+HRIGR+GR GR G A  L+ K+D+  +  
Sbjct: 319 ISTDVWARGIDVQQVSLVINYDLPLDKENYVHRIGRSGRFGRKGVAINLITKDDVAEMKD 378

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +E+  + ++  +  DLSSL
Sbjct: 379 LERYYKIRIREMPSDLSSL 397


>gi|254491606|ref|ZP_05104785.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxidans
           DMS010]
 gi|224463084|gb|EEF79354.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxydans
           DMS010]
          Length = 415

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 140/398 (35%), Positives = 214/398 (53%), Gaps = 22/398 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP----MLTILEKGRARVRMPR 74
           AG+   TPIQ +++PL+L   DV G AQTGTGKT +F+L     +L I        + PR
Sbjct: 4   AGFEFCTPIQAQSLPLLLSGRDVAGQAQTGTGKTIAFLLATFQRLLEIPAADNWDKKQPR 63

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            LIL PTRELA Q+A + E       L +A+  GG  ++ Q   +  G DVLI TPGR+L
Sbjct: 64  ALILAPTRELAIQIAKDAELLNVEAGLRIAIAHGGKDYQRQRDNITEGVDVLIGTPGRLL 123

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTRQTLLFSATMTDELQ 192
           D+  +G   +  I+ +V+DEADRM D+GFI  ++     +P    R  +LFSAT++ ++ 
Sbjct: 124 DYQKQGVFSLKFIDAMVLDEADRMFDLGFIKDVRYFLRRIPKPEKRLGMLFSATLSYKVS 183

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           +++   + NP++++V       + IE      Y    +K  LL  L++     + GIIF 
Sbjct: 184 ELAYEHMNNPEKVQVAPEKMMGDRIEEWVY--YPANDEKVPLLLALIERLQP-ERGIIFV 240

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
           N K+    +   LE        + G++ Q+ R ++L +F++G    +VA+D+AARGL IP
Sbjct: 241 NTKQAADVVWGYLEGNEHKAALLSGDVPQKKREQLLKHFQDGEFPFLVATDVAARGLHIP 300

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
            V HVFN+D+P   E+Y+HR GRT RAG  G A +   +E +  +  IE  I+ K+   +
Sbjct: 301 AVTHVFNYDLPQDVEDYVHRTGRTARAGASGVAISFACEEFVFSLPEIEDYIKHKLPVAS 360

Query: 373 GDLSSLNPPLEKI-------------DIAQHNHARKNN 397
               SL  P  ++             D A+    R+NN
Sbjct: 361 TSDESLIEPKPRVRPEKRPVHNRNRNDSAKSRRPRRNN 398


>gi|154342919|ref|XP_001567405.1| ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134064737|emb|CAM42842.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 604

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 136/377 (36%), Positives = 207/377 (54%), Gaps = 16/377 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA +GLSP +   V    Y KPTP+Q   IP VL+  D+   AQTG+GKTA++++P +  
Sbjct: 127 FATMGLSPALAENVSRCRYQKPTPVQKYGIPCVLKGSDLMACAQTGSGKTAAYLIPAINF 186

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +        K       P  L+L PTREL+ Q+ +   K+     +   ++ GG     Q
Sbjct: 187 MLVNNLNRAKPTNSQSAPSALVLSPTRELSIQIYEEGRKFTYRTGIRCVVVYGGADPRHQ 246

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS--- 172
             +L RG  +L+ TPGR+ D F RG    +++  LV+DEADRMLDMGF P I+ I     
Sbjct: 247 IHELTRGCGLLVATPGRLSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRAIVQGPD 306

Query: 173 ---LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                P  RQTLL+SAT   E+Q+++  FL     ++V    ST E I    V       
Sbjct: 307 SDMPPPGERQTLLYSATFPKEIQQMAREFLYRHYFLQVGRVGSTTENITQD-VRWVEDMD 365

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL+ L + Q   +  ++F  +K++   L   L +      +IHG+  QR R + L 
Sbjct: 366 KRGCLLEVLKEHQG--ERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALD 423

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G  +++VA+D+A+RGLDIP+V  V  +D+P+  ++Y+HRIGRTGRAG+ G A +  
Sbjct: 424 IFKSGVCRVLVATDVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGRTGRAGKRGTAISFF 483

Query: 350 AKEDIKHIDAIEKLIEK 366
            +++   +D +  L+ +
Sbjct: 484 NEKNRNVVDDLIPLLRE 500


>gi|320451062|ref|YP_004203158.1| DEAD-box ATP-dependent RNA helicase [Thermus scotoductus SA-01]
 gi|320151231|gb|ADW22609.1| DEAD-box ATP-dependent RNA helicase [Thermus scotoductus SA-01]
          Length = 521

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 147/393 (37%), Positives = 223/393 (56%), Gaps = 16/393 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F D  L  ++  A+L  G   PTPIQ   +PL L+  D+ G A+TGTGKT +F LP+ 
Sbjct: 1   MEFKDFPLKDEIKEALLRRGITAPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE  + R R+PR L+L PTRELA QV+   +      +L V  + GG  +  Q ++L 
Sbjct: 61  QGLEASKERGRLPRALVLTPTRELALQVSGELQAVAP--HLKVVTVYGGTGYGKQKEELT 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR LD+  +G L ++ + I V+DEAD ML MGF   ++ I S  P  RQT
Sbjct: 119 RGCDVVVATPGRALDYLRQGALDLSQVRIAVLDEADEMLSMGFEEEVEAILSATPKERQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+    +K++E ++++P  I V       E I +   A  A    + +LL  +L 
Sbjct: 179 LLFSATLPSWARKLAERYMKSPVVINV----VREEGITYQEEAIPAP-GDRLSLLSDVLF 233

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   K  I+F   K     +   L + G    AIHG++ Q  R +++  F+EG ++++V
Sbjct: 234 VK-APKRAIVFTRTKAETEEVATGLLRLGHPARAIHGDLSQTDRERVMRAFREGEVRVLV 292

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP+V  V ++  P++ E Y HR GRTGRAGR G+   L    + + +  +
Sbjct: 293 ATDVAARGLDIPEVDLVVHYRFPDKPETYQHRSGRTGRAGRGGEVVILYGPRERRELSEL 352

Query: 361 EKLIEKKVDWLNGDLSSLNPPL-EKIDIAQHNH 392
           E+ + +        L  +NPP  E++  A+ +H
Sbjct: 353 ERAVGR-------TLKRVNPPTPEEVLEAKWHH 378


>gi|260770091|ref|ZP_05879024.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
 gi|260615429|gb|EEX40615.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
          Length = 412

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 208/369 (56%), Gaps = 11/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS +++ A L     +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 1   MPFSTLSLSSELIHA-LPKDVKQPTDIQALAIPELLAGKDVLALANTGSGKTLAYALPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +    + L+L PTRELA QV++   + G+   L    L GG+    Q + L 
Sbjct: 60  DKLHANPQQ----KALVLVPTRELAIQVSEAINQVGQALELNAVCLCGGVDKAQQQQALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ T GR++D  N G L +++I  L++DEADR+LDMGF P +QNI       RQT
Sbjct: 116 TNPHILVATTGRLVDLVNHG-LDLSHIHTLILDEADRLLDMGFWPDVQNIAMQTANQRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLL 239
            +FSAT ++ L++ ++  +  PK++  +  +ST + I E  F+      SK  AL++  L
Sbjct: 175 AMFSATFSEALKEKAKQLMHAPKQVAAHQENSTNQDITETLFLVNKG--SKTKALIE--L 230

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+     ++F   K+N   L   L K G S  A+HGN  Q  R + L+ FK G + ++
Sbjct: 231 IQQNAWTRVLVFIGAKENADGLAKKLNKAGVSTTALHGNKSQDEREEALAQFKSGQVNVL 290

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG  G A +LV   ++  ++A
Sbjct: 291 IATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVAMSLVCHGEMDALNA 350

Query: 360 IEKLIEKKV 368
           I  L ++ +
Sbjct: 351 IRHLTQRAL 359


>gi|163838674|ref|NP_001106217.1| eukaryotic initiation factor 4A-III [Bombyx mori]
 gi|110376569|gb|ABG73410.1| eIF4AIII protein [Bombyx mori]
          Length = 405

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 210/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L  
Sbjct: 34  FDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQT 93

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     +R  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 94  LD---TTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYG 150

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 151 QHVVSGTPGRVFDMIRRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 210

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 211 ISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 269

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   +++  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 270 ----TITQAVIFCNTKRKVDWLTQKMQEANFTVSSMHGDMPQKERDNIMKEFRSGQSRVL 325

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 326 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRD 385

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 386 IEQYYSTQIDEMPMNVADL 404


>gi|296450396|ref|ZP_06892152.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP08]
 gi|296879481|ref|ZP_06903475.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP07]
 gi|296260657|gb|EFH07496.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP08]
 gi|296429627|gb|EFH15480.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP07]
          Length = 497

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 220/373 (58%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L+ K++ ++    Y  P+ +QI+ IP +L   ++   ++TG+GKTASF +P+   
Sbjct: 5   FEKFKLNEKILKSLKSLEYNIPSRVQIEVIPKLLNGQNLVVKSKTGSGKTASFAIPLC-- 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E         + LI+ PTRELA QV D     G+   +  + + G  P + Q  +L++ 
Sbjct: 63  -ENINVEYNNIQALIVVPTRELALQVKDEISSIGRLRKVRCSAIFGKQPIKEQIAELKQR 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRI+DH N+G + + +I+ L+IDEAD+M + GF+  ++ I   +P  +   L
Sbjct: 122 VHIVVATPGRIIDHINKGTIKLEDIKYLIIDEADKMFNKGFVEQMEKILLNLPKEKIVGL 181

Query: 183 FSATMTDELQKVSENFLQNPK--RIEVNTPSSTAET--IEHCFVATYAQYSKKCALLQQL 238
           FSAT+ +E++ + E ++ +     IE N   +   T  I+   + T  +  +K  LL++L
Sbjct: 182 FSATIDEEIKYICEKYIPDYSVINIEENKSDTNQRTRQIDDKIIKTNER--EKYILLKEL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S++  K+ IIFCN K+ V  L + + K+GF +  +H ++ Q  R+ ++ +FK+    +
Sbjct: 240 IYSENP-KSVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKKQKFNV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V+SD+A+RG+ I D+  V N+DVP   ENYIHRIGRTGR    GKA T+V ++D K+I+
Sbjct: 299 LVSSDVASRGIHIDDISLVINYDVPQDKENYIHRIGRTGRKRNSGKAITIVTEKDEKYIE 358

Query: 359 AIEKLIEKKVDWL 371
            IE  I  K++ L
Sbjct: 359 NIETYIGYKINEL 371


>gi|290987403|ref|XP_002676412.1| predicted protein [Naegleria gruberi]
 gi|284090014|gb|EFC43668.1| predicted protein [Naegleria gruberi]
          Length = 407

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 134/383 (34%), Positives = 207/383 (54%), Gaps = 12/383 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTI-PLVLQR--HDVCGIAQTGTGKTASFVLP 58
           +F D+ L   ++  +   G+ KP+ IQ + I P+       DV G AQ+GTGKTA+F + 
Sbjct: 30  EFDDMNLKEDLLRGIYSYGFEKPSIIQQRAILPITTSEPPADVIGQAQSGTGKTATFTIS 89

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L  L      V  P+ L+L PTRELA Q+       G+   + V   +GG   +     
Sbjct: 90  LLQRLNIS-PDVIQPQGLVLAPTRELAQQIHKVIMSLGEYMKVKVHACVGGTKVQHDIAI 148

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G  +++ TPGR+      G L +N+I++LVIDEAD ML  GF   I  I   +P   
Sbjct: 149 LEEGVHIIVGTPGRVFHMIQSGHLNVNSIKMLVIDEADEMLSRGFKDQIYAIFKNLPQDM 208

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALL 235
           Q  LFSATM  E+ ++++ F+++P RI V     T E I+  +++   +   +   C L 
Sbjct: 209 QVCLFSATMPTEVLEITDKFMRDPIRILVKKEELTLEGIKQFYISVDREDYKFETLCDLY 268

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + L     T+   +IFCN +K V  L   L K+ F+V  +HG +D + R  I+  F+   
Sbjct: 269 KVL-----TISQCVIFCNSRKKVEQLAEQLNKKDFTVSCMHGEMDPKDRELIMHEFRTSA 323

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++ +DL ARG+D+  V  V NFD+P   ENY+HRIGR+GR GR G A   V K+D++
Sbjct: 324 SRVLITTDLLARGIDVHHVSLVINFDLPRHKENYLHRIGRSGRYGRKGVAINFVTKDDVR 383

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
            +  IEK     ++    +++ L
Sbjct: 384 SLREIEKFYSTSIEECPNNIAEL 406


>gi|226291932|gb|EEH47360.1| ATP-dependent RNA helicase DBP10 [Paracoccidioides brasiliensis
           Pb18]
          Length = 895

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 135/391 (34%), Positives = 216/391 (55%), Gaps = 38/391 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPL+L   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 84  FQSMGLNATLLKAIARKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 143

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LI+ P+RELA Q     ++ G+  +L   LL+GG   E Q + +   
Sbjct: 144 LKSHSAKF-GARALIMSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFEYMSGN 202

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I  ++P +RQTLL
Sbjct: 203 PDIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFSAQLTEILHVLPSSRQTLL 262

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
           FSAT+   L + +   LQ P  I ++  S  +  +++ F +  +   K+ ALL  L    
Sbjct: 263 FSATLPKSLVEFARAGLQEPTLIRLDAESKISPDLQNGFFSIKSS-EKEGALLHLLHDII 321

Query: 239 -----------------------------LQSQD---TMKNGIIFCNQKKNVVNLCHSLE 266
                                        L+S     T  + IIF   K +V  L   L 
Sbjct: 322 KIPTGETEAGKRTKEELHNPKKRKRSDTVLKSHKESPTEHSTIIFTATKHHVDYLTSVLR 381

Query: 267 KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
           + GF+V   +G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D P+++
Sbjct: 382 QSGFAVSYAYGSLDQTARKIEVQNFRCGITHILVVTDVAARGIDIPILSNVINYDFPSQS 441

Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           + ++HR+GRT RAGR G +++L+ + D  ++
Sbjct: 442 KIFVHRVGRTARAGRTGWSYSLIRESDAPYL 472


>gi|295667653|ref|XP_002794376.1| ATP-dependent RNA helicase DBP10 [Paracoccidioides brasiliensis
           Pb01]
 gi|226286482|gb|EEH42048.1| ATP-dependent RNA helicase DBP10 [Paracoccidioides brasiliensis
           Pb01]
          Length = 905

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 134/391 (34%), Positives = 212/391 (54%), Gaps = 38/391 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPL+L   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 84  FQSMGLNATLLKAIARKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 143

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LI+ P+RELA Q     ++ G+  +L   LL+GG   E Q + +   
Sbjct: 144 LKSHSAKF-GARALIMSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFEYMSGN 202

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 203 PDIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFSAQLTEILHGLPSSRQTLL 262

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
           FSAT+   L + +   LQ P  I ++  S  +  +++ F  T     K+ ALL  L    
Sbjct: 263 FSATLPKSLVEFARAGLQEPTLIRLDAESKISPDLQNGFF-TIKSSEKEGALLHLLHDII 321

Query: 239 --------------------------------LQSQDTMKNGIIFCNQKKNVVNLCHSLE 266
                                            +   T  + IIF   K +V  L   L 
Sbjct: 322 KIPTGETEAGKRTKEELHNPKKRKRSDPVVKSHKESPTEHSTIIFTATKHHVDYLTSVLR 381

Query: 267 KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
           + GF+V   +G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D P+++
Sbjct: 382 QSGFAVSYAYGSLDQTARKIEVQNFRSGITHILVVTDVAARGIDIPILSNVINYDFPSQS 441

Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           + ++HR+GRT RAGR G +++L+ + D  ++
Sbjct: 442 KIFVHRVGRTARAGRTGWSYSLIRESDAPYL 472


>gi|224096586|ref|XP_002310663.1| predicted protein [Populus trichocarpa]
 gi|222853566|gb|EEE91113.1| predicted protein [Populus trichocarpa]
          Length = 407

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 134/376 (35%), Positives = 205/376 (54%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++GL   V+  + + G+ KP+ IQ + +  +++  DV   AQ+GTGKT+   L    +
Sbjct: 36  FDEMGLKEDVLRGIYNYGFEKPSAIQQRALMPIIKGRDVIAQAQSGTGKTSMIALTACQL 95

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     V+    LIL PTRELA Q        G+N N+ V   IGG       +KLE G
Sbjct: 96  VDTANREVQ---ALILSPTRELAEQTEKVITAIGENINIQVHACIGGKSVGEDIRKLEYG 152

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I +LV+DE+D ML  GF   I ++   +P   Q +L
Sbjct: 153 VHVVSGTPGRVCDMIKRRSLRTRAIRVLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVL 212

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+ +E+ +++  F+ +P +I V     T E I+  FVA   +  K   L    L   
Sbjct: 213 ISATLPNEILEITSKFMTDPVKILVKRDELTLEGIKQFFVAVEKEEWKFETLTD--LYDT 270

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN K+ V  L   + +  F+V A+HG++ QR R  I+SNF+ G  ++++ +
Sbjct: 271 LTITQAVIFCNTKRKVDWLTAKMVEFNFTVSAMHGDMPQRERDAIMSNFRLGETRVLITT 330

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE+
Sbjct: 331 DVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQ 390

Query: 363 LIEKKVDWLNGDLSSL 378
               ++D +  ++  L
Sbjct: 391 YYSTQIDEMPMNIGDL 406


>gi|169850031|ref|XP_001831713.1| ATP-dependent RNA helicase ded-1 [Coprinopsis cinerea okayama7#130]
 gi|116507149|gb|EAU90044.1| ATP-dependent RNA helicase ded-1 [Coprinopsis cinerea okayama7#130]
          Length = 653

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 137/361 (37%), Positives = 201/361 (55%), Gaps = 22/361 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L P ++  +  A Y  PTP+Q  +IP+V    D+   AQTG+GKT  F+ P+L+ 
Sbjct: 173 FTSPPLDPVLLENIGFAMYTTPTPVQKYSIPIVAGGRDLMACAQTGSGKTGGFLFPILSA 232

Query: 63  L--------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
                            GRAR   P  LIL PTREL +Q+ +   K+     +  A++ G
Sbjct: 233 SFTEGPRPPPETAAPTYGRARKAYPTALILAPTRELVSQIHEEARKFAYRSWVRPAVVYG 292

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G     Q +++ERG D+L  TPGR++D   RG++ + N++ LV+DEADRMLDMGF P I+
Sbjct: 293 GADINQQLRQIERGCDLLSATPGRLVDLIERGRISLANVKYLVLDEADRMLDMGFEPQIR 352

Query: 169 NITSL--VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
            I     +P    RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I       
Sbjct: 353 RIVQGEDMPGVNDRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKI--E 410

Query: 225 YAQYSKKCALLQQLL--QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
           Y +   K ++L  +L  QS++ M   ++F   K+    L   L        +IHG+  QR
Sbjct: 411 YVEDGDKRSVLLDILASQSKEDMGLTLVFVETKRMADMLSDFLIGNNMPATSIHGDRTQR 470

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R   L  F+ G   +MVA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  
Sbjct: 471 EREMALQTFRTGRTPIMVATAVAARGLDIPNVTHVVNYDLPSDIDDYVHRIGRTGRAGNV 530

Query: 343 G 343
           G
Sbjct: 531 G 531


>gi|70663480|emb|CAJ15139.1| vasa homlogue [Platynereis dumerilii]
          Length = 712

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 143/398 (35%), Positives = 220/398 (55%), Gaps = 21/398 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F    LS  V   V  A Y +PTPIQ   IP+VL   D+ G AQTG+GKTA+F+LP+L
Sbjct: 270 LNFDQADLSETVRSNVRKAKYDRPTPIQKWAIPIVLSGKDLMGCAQTGSGKTAAFLLPVL 329

Query: 61  TILEK--------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
           T + K        G    + P  +I+ PTREL  Q+     K+  +  +   ++ GG   
Sbjct: 330 TGIIKNDLIEGGSGFGGPQYPAAIIVGPTRELVNQIYLEARKFASSTCVRPVVVYGGTSV 389

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q ++LE+GA V++ TPGR+LD   +GK+ ++ ++ L++DEADRMLDMGF P I+ + +
Sbjct: 390 GYQARELEKGAHVVVGTPGRLLDFIGKGKINLSKVKYLILDEADRMLDMGFEPEIRKLVT 449

Query: 173 LVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
                    RQTL+FSAT   E+Q++++ FL     + V         I    V    +Y
Sbjct: 450 TFDMPEKGQRQTLMFSATFAAEIQQLAKEFLSEYVFVTVGRVGGANSDITQ-EVHQVTKY 508

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            K+  L++ L  +Q      ++F   K++   L   L ++ +   +IHG+  QR R + L
Sbjct: 509 EKREKLVEIL--NQAGTDRTLVFLETKRSADFLAAYLSQEQYPATSIHGDRLQREREEAL 566

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +FK G   +++A+ +AARGLDIP V HV N+D+P+  + Y+HRIGRTGR G  GKA + 
Sbjct: 567 LDFKTGRAPILIATSVAARGLDIPGVKHVINYDLPSGIDEYVHRIGRTGRCGNLGKATSF 626

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP-LEKI 385
               D+     + + + K +    GD   + PP LE+I
Sbjct: 627 F-DPDVNQDKELARSLVKTL----GDAQQVVPPWLEEI 659


>gi|145607341|ref|XP_361705.2| hypothetical protein MGG_04179 [Magnaporthe oryzae 70-15]
 gi|152013475|sp|A4R5B8|DBP10_MAGO7 RecName: Full=ATP-dependent RNA helicase DBP10
 gi|145014915|gb|EDJ99483.1| hypothetical protein MGG_04179 [Magnaporthe oryzae 70-15]
          Length = 914

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 135/389 (34%), Positives = 213/389 (54%), Gaps = 37/389 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+P ++ A+   G+  PTPIQ K+IPL+L R DV G+A+TG+GKTA+FV+PM+  
Sbjct: 92  FQAMGLNPSLLQAITRKGFAVPTPIQRKSIPLILDRRDVVGMARTGSGKTAAFVIPMIER 151

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L    ARV   R LI+ P+RELA Q     +++GK  +L   LL+GG   E Q   +   
Sbjct: 152 LRAHSARV-GARALIMSPSRELALQTLKVVKEFGKGTDLKTVLLVGGDSLEDQFGFMTTN 210

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 211 PDIIIATPGRFLHLKVEMSLDLSSIKYVVFDEADRLFEMGFATQLTEILHSLPPSRQTLL 270

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   LQ+P  + ++  +  +  +E  F +      K+ ALL  +LQ  
Sbjct: 271 FSATLPRSLVEFARAGLQDPSLVRLDAETKISPDLESAFFSVKGA-EKEGALL-HILQDV 328

Query: 243 DTMKNG----------------------------------IIFCNQKKNVVNLCHSLEKQ 268
             M  G                                  IIF   K +V  L   L + 
Sbjct: 329 IKMPTGTPEGFKEDKDEGSKKRKRGPDRPNAKEKPTEHSTIIFTATKFHVEYLTSILVQA 388

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G++V   +G +DQ +R   + +F+ G   ++V +D+AARG+DIP + +V N+D  ++ + 
Sbjct: 389 GYAVSHAYGALDQTARKIQVEDFRRGKTNILVVTDVAARGIDIPVLANVINYDFCDQPKV 448

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++HR+GRT RAG+ G +++LV+  D  ++
Sbjct: 449 FVHRVGRTARAGQKGWSYSLVSDIDAPYL 477


>gi|328720638|ref|XP_001950474.2| PREDICTED: probable ATP-dependent RNA helicase DDX49-like
           [Acyrthosiphon pisum]
          Length = 470

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 158/415 (38%), Positives = 227/415 (54%), Gaps = 16/415 (3%)

Query: 1   MDFADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+F +L LS K +C  L A G   PT IQ   IP +L   D  G A+TG+GKT +F LP 
Sbjct: 1   MNFENLNLS-KYLCDQLKAVGVNSPTEIQKNCIPKILDGIDCIGCAKTGSGKTLAFALP- 58

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             IL+K          LIL PTRELA Q+AD F   GK  NL   ++ GG+    Q ++L
Sbjct: 59  --ILQKLWEEPYGIFALILTPTRELAYQIADQFAVIGKPKNLRHCVVTGGMEMIVQAREL 116

Query: 120 ERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                +++ TPGR+ DH        +  I+ LV+DEADR+L   F   I  I   +P  R
Sbjct: 117 SNKPHIVVSTPGRLADHLESCDTFSLKRIQFLVLDEADRLLGGKFDKQIATIFKALPKER 176

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATMTD L+KV     +N    E      T + +E  +V     Y+ K   L ++
Sbjct: 177 QTLLFSATMTDTLEKVKMITKKNTFVYESTAEVKTVDELEQFYV--LCPYNVKDGYLVEI 234

Query: 239 L-QSQDTMKNGII--FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + Q ++  + G+I  F +  KN   L  +L + GF   ++H  I QR R+  L+ FK   
Sbjct: 235 VRQFREKDEKGLIMIFTDTCKNCQLLHMTLNEVGFDTVSLHAMISQRQRLAGLAKFKSHV 294

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++A+D+A+RGLDIP V  V N  +PN A +Y+HR+GRT RAGR G+A ++V + DIK
Sbjct: 295 SKILIATDVASRGLDIPAVSLVINHIIPNNATDYVHRVGRTARAGRQGRAVSIVTQHDIK 354

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            + AIE  I  ++     D+S L+  + KI + Q +  ++   I    T FD R+
Sbjct: 355 LVKAIEAKINIRLKEY--DVSGLH--VAKI-LTQVHVTKREAQIKLDETDFDERR 404


>gi|319651577|ref|ZP_08005704.1| hypothetical protein HMPREF1013_02316 [Bacillus sp. 2_A_57_CT2]
 gi|317396644|gb|EFV77355.1| hypothetical protein HMPREF1013_02316 [Bacillus sp. 2_A_57_CT2]
          Length = 410

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 135/365 (36%), Positives = 204/365 (55%), Gaps = 10/365 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L P ++ AV D G+ +PT IQ + IP VL+     G +QTGTGKT S+VLP+L  
Sbjct: 6   FDRFNLKPFIIEAVKDFGFFEPTEIQERMIPAVLKGESAIGQSQTGTGKTHSYVLPILQK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN----YNLTVALLIGGIPFEAQNKK 118
           ++  R  V+    +I  PTRELA Q+     K  ++      +T    IGG   +   +K
Sbjct: 66  VDPSRQEVQ---AIITAPTRELANQIYHEILKVTEHCPEGEEITARCYIGGTDKQRTIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+R   V++ TPGRI D      L ++  EIL++DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LKRQPHVVVGTPGRINDLVKEQALFVHTAEILIVDEADLMLDMGFIEDVDQIAARMPEKL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+   + +++NPK + V    + A  IEH  + +  ++  K  L+ Q 
Sbjct: 183 QMLVFSATIPEKLKPFLKKYMENPKYVHVEPKQAAAANIEHWLLPS--RHRNKVELVYQA 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S +     I+F N KK    +   L  +G  V  IHG+++ R R K++    +   Q 
Sbjct: 241 LTSLNPYL-AIVFTNTKKKADEVADGLISKGLKVGRIHGDLNPRERKKMMKQILDLEFQY 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  + HV N+++P   + YIHR+GRT RAG  G A T+    D   ++
Sbjct: 300 IVATDLAARGIDIQGISHVINYELPTDLDFYIHRVGRTARAGFSGIAVTVYETSDEDALN 359

Query: 359 AIEKL 363
            +EK+
Sbjct: 360 RLEKM 364


>gi|307111380|gb|EFN59614.1| hypothetical protein CHLNCDRAFT_29172 [Chlorella variabilis]
          Length = 402

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 205/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   G+ KP+ IQ + +  + Q  DV   AQ+GTGKT+   + +  +
Sbjct: 31  FDAMGLREQLLRGIYQFGFEKPSAIQQRAVLPITQGRDVIAQAQSGTGKTSLIAITLCQM 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     +R  + L+L PTRELA Q   N    G +  +     IGG       +KLE G
Sbjct: 91  LD---TTLREVQALVLSPTRELATQTEKNILAIGDHMAVQAHACIGGKSVGDDIRKLENG 147

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L   NI+ LV+DEAD ML+ GF   I +I   +P   Q +L
Sbjct: 148 VHIVSGTPGRVFDMIKRRSLRTRNIKTLVLDEADEMLNKGFKEQIYDIYRYLPPETQVVL 207

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 208 VSATLPHEVLEMTHKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 266

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V A+HG++ Q+ R  I+  F++G  +++
Sbjct: 267 ----TITQAVIFCNTKRKVDWLTEKMRQNNFTVSAMHGDMPQKEREAIMDEFRKGATRVL 322

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +  
Sbjct: 323 ITTDVWARGLDVQQVSLVINYDLPNSRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRD 382

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 383 IEQFYSTQIDEMPMNVADL 401


>gi|240275043|gb|EER38558.1| ATP-dependent RNA helicase DBP10 [Ajellomyces capsulatus H143]
          Length = 941

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 137/391 (35%), Positives = 212/391 (54%), Gaps = 38/391 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL+  ++ A+   G+  PTPIQ KTIPLVL   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 88  FQPLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEK 147

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q + +   
Sbjct: 148 LKSHSAKF-GSRALILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMASN 206

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 207 PDIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFATQLTEILHGLPSSRQTLL 266

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
           FSAT+   L + +   LQ P  I ++  S  +  +++ F  T     K+ ALL  L    
Sbjct: 267 FSATLPKSLVEFARAGLQEPILIRLDAESKISPDLQNAFF-TLKSSEKEGALLHVLHEVI 325

Query: 239 ------LQSQDTMK--------------------------NGIIFCNQKKNVVNLCHSLE 266
                  ++Q   K                          + IIF   K +V  L   L 
Sbjct: 326 KIPTGETEAQKRAKEEVKHSKKRKRSEFTSHSHKESPTEYSTIIFTATKHHVDYLTSILR 385

Query: 267 KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
             GF+V   +G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D P++ 
Sbjct: 386 TSGFAVSYAYGSLDQTARKIEVQNFRAGITHILVVTDVAARGIDIPILSNVINYDFPSQP 445

Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           + ++HR+GRT RAG+ G +++L+ + D  ++
Sbjct: 446 KIFVHRVGRTARAGKTGWSYSLIRESDTPYL 476


>gi|308808280|ref|XP_003081450.1| putative RNA helicase [Oryza sativa (ISS) [Ostreococcus tauri]
 gi|116059913|emb|CAL55972.1| putative RNA helicase [Oryza sativa (ISS) [Ostreococcus tauri]
          Length = 734

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 137/388 (35%), Positives = 214/388 (55%), Gaps = 9/388 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D G S +++   + A + KP+PIQ ++ P+V+   D+ GIA TG+GKT +F +P LT 
Sbjct: 325 FEDAGFSKELL--RVTANFQKPSPIQAQSWPIVMSGRDMVGIAATGSGKTLAFGMPALTQ 382

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNK-KL 119
           I  +   +   P  L+L PTRELA Q A  F+  G+   +    + GG P +E +N  K 
Sbjct: 383 IRSQPPCKPGQPICLVLAPTRELAQQTAKVFDDAGEASGVRCVCVYGGAPKYEQKNAMKA 442

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA V++ TPGR+ D    G + ++ + +LV+DEADRMLD+GF P I+ I       RQ
Sbjct: 443 GGGAAVIVATPGRLRDFMEEGVIKLDRVTMLVLDEADRMLDLGFEPEIRAIAGATRADRQ 502

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKK--CALLQ 236
           T++FSAT    +Q ++  F+ NP R+ + +     +++I         Q   +    +++
Sbjct: 503 TVMFSATWPMSVQSLASEFMCNPVRVRIGSEGLKASQSITQIVEVVEPQDKDRHLARVMK 562

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q L S       +IF   KK   NL   L ++  +VC IHG++ Q  R + +  FK+GT 
Sbjct: 563 QYLGSPKDCPRTLIFGLYKKECANLHQRLSREWPAVC-IHGDMSQADRERSVEAFKKGTS 621

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++A+D+AARGLDI  V +V N+  P   E+Y+HRIGRTGRAG  G A T   + D   
Sbjct: 622 RILIATDVAARGLDIKGVEYVINYTFPLTTEDYVHRIGRTGRAGATGLAHTFFTQHDKAR 681

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
              +  ++ K    +  DL+     ++K
Sbjct: 682 AGELVNVLRKAGAEVPEDLTKFGTHVKK 709


>gi|109130176|ref|XP_001087519.1| PREDICTED: probable ATP-dependent RNA helicase DDX53-like [Macaca
           mulatta]
          Length = 592

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 210/361 (58%), Gaps = 7/361 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK---G 66
           P ++ ++   G+VKPTPIQ +  P++LQ  D+  +AQTGTGKT S+++P    ++     
Sbjct: 191 PDLLKSITRVGFVKPTPIQSQAWPIILQGIDLIEVAQTGTGKTLSYLMPGFIHVDSQPLS 250

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTRELA QV     KY    +L    + GG     Q + + +  D++
Sbjct: 251 REQRNGPGMLVLTPTRELALQVEAECSKYSYK-DLKSICICGGRNRIGQIEDISKDVDII 309

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + +I  LV+DEAD+MLDM F P I  I   V   RQT++ SAT
Sbjct: 310 IATPGRLNDLQMNNSVNLRSITYLVMDEADKMLDMEFEPQIMKILLDVHPDRQTVMISAT 369

Query: 187 MTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
             D +++++ ++L++P  + V N   +   T++   + T  +  +K AL Q+ +++    
Sbjct: 370 WPDTVRRLARSYLKDPMIVYVGNLNLAAVNTVKQNIIVTTEE--EKRALTQEFIENMSPN 427

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F +QK+   +L      QG SV ++HGN ++  + + L +F+ G I++++ +DL 
Sbjct: 428 DKVIMFVSQKRIADDLSSDFNIQGISVESLHGNSEESDKERALQDFESGNIKILITTDLV 487

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARGLD+ DV HV+N+D P   E Y+HR+GR GRAG+ G + TL+ + D K    + K++E
Sbjct: 488 ARGLDVNDVTHVYNYDFPWNIEEYVHRVGRIGRAGKTGTSVTLITQRDAKMAGELIKILE 547

Query: 366 K 366
           +
Sbjct: 548 R 548


>gi|302785159|ref|XP_002974351.1| hypothetical protein SELMODRAFT_149865 [Selaginella moellendorffii]
 gi|300157949|gb|EFJ24573.1| hypothetical protein SELMODRAFT_149865 [Selaginella moellendorffii]
          Length = 523

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 129/374 (34%), Positives = 205/374 (54%), Gaps = 29/374 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + G+ P+++ AV +AGY KPTPIQ+ +IPL LQ+ DV GIA TG+GKTA+FV+PML 
Sbjct: 115 NWEESGICPEILRAVQEAGYKKPTPIQMASIPLGLQQRDVIGIAGTGSGKTAAFVIPMLM 174

Query: 62  ILEK------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            + +       RA +  P  L++ PT ELA Q+ +   K  K  ++ V  L+ G     Q
Sbjct: 175 YVSRLPKMTLERA-IEGPYALVMAPTTELAQQIQEETVKLAKYMDINVLSLVAGEAIGGQ 233

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           + KL +G +++I TPGR+L    +G  +++    +V+DE DRM+ +GF   + +    +P
Sbjct: 234 SSKLLQGCEIVIATPGRLLHCLEQGYAVLHQCNYVVLDEGDRMIALGFEEQVIDALEAMP 293

Query: 176 FT----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
            +                R T +FSATM   ++++++ +L+NP  + V     +    + 
Sbjct: 294 SSNMKPESEDVELEDRIYRTTYMFSATMPPAVERLAKKYLRNP--VVVTIEEMSKRISQK 351

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
             +    +  K+   L++LL     M   I+F N KK    +   L   G  V  IHG  
Sbjct: 352 VMMVDEEEKPKR---LRRLLDELGEMST-IVFVNTKKQADKVSKQLHDMGIKVATIHGGK 407

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q+ R     +F+      ++A+D+  RG+D+PDVGH+ N+D+P+  E YIHRIGRTGRA
Sbjct: 408 TQQKRQTNFQDFRSKRRSCLIATDVVGRGIDVPDVGHIVNYDMPSTVEMYIHRIGRTGRA 467

Query: 340 GRHGKAFTLVAKED 353
           G+ G A T +   D
Sbjct: 468 GKSGAATTFLTLND 481


>gi|302818333|ref|XP_002990840.1| hypothetical protein SELMODRAFT_11027 [Selaginella moellendorffii]
 gi|300141401|gb|EFJ08113.1| hypothetical protein SELMODRAFT_11027 [Selaginella moellendorffii]
          Length = 583

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 131/374 (35%), Positives = 206/374 (55%), Gaps = 29/374 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + G+ P+++ AV +AGY KPTPIQ+ +IPL LQ+ DV GIA TG+GKTA+FV+PML 
Sbjct: 186 NWEESGICPEILRAVQEAGYKKPTPIQMASIPLGLQQRDVIGIAGTGSGKTAAFVIPMLM 245

Query: 62  ILEK------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            + +       RA +  P  L++ PT ELA Q+ +   K  K  ++ V  L+ G     Q
Sbjct: 246 YVSRLPKMTLERA-IEGPYALVMAPTTELAQQIQEETVKLAKYMDINVLSLVAGEAIGGQ 304

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           + KL +G +++I TPGR+L    +G  +++    +V+DE DRM+ +GF   + +    +P
Sbjct: 305 SSKLLQGCEIVIATPGRLLHCLEQGYAVLHQCNYVVLDEGDRMIALGFEEQVIDALEAMP 364

Query: 176 FT----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
            +                R T +FSATM   ++++++ +L+NP    V T    ++ I  
Sbjct: 365 SSNMKPESEDVELEDRIYRTTYMFSATMPPAVERLAKKYLRNPV---VVTIEEMSKRISQ 421

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
             +    +  +K   L++LL     M   I+F N KK    +   L   G  V  IHG  
Sbjct: 422 KVIMVDEE--EKPKRLRRLLDELGEMST-IVFVNTKKQADKVSKQLHDMGIKVATIHGGK 478

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q+ R     +F+      ++A+D+  RG+D+PDVGH+ N+D+P+  E YIHRIGRTGRA
Sbjct: 479 TQQKRQTNFQDFRSKRRSCLIATDVVGRGIDVPDVGHIVNYDMPSTVEMYIHRIGRTGRA 538

Query: 340 GRHGKAFTLVAKED 353
           G+ G A T +   D
Sbjct: 539 GKSGAATTFLTLND 552


>gi|170594503|ref|XP_001902003.1| ATP-dependent RNA helicase P62 [Brugia malayi]
 gi|158590947|gb|EDP29562.1| ATP-dependent RNA helicase P62, putative [Brugia malayi]
          Length = 587

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 132/382 (34%), Positives = 211/382 (55%), Gaps = 9/382 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            +F++ G  P ++  +  A + KPT IQ  + P+ L  HD+  IA+TG+GKT ++ LP +
Sbjct: 188 FEFSETGFPPAIIEKLKKACFEKPTVIQSISWPVALTGHDMISIARTGSGKTLAYTLPGI 247

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             ++      +VR P  LIL PTREL  Q++        N++  VA   GG   + Q + 
Sbjct: 248 VHMQNQEQPEKVRGPAVLILAPTRELVQQIS----SMAMNFHSKVACAYGGSGRDQQART 303

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +  G D+L   PGR+LD    G L +N    LV+DEADRMLDMGF P I+ I S++   R
Sbjct: 304 IREGVDILAAAPGRLLDFLIAGVLNLNRCTYLVLDEADRMLDMGFEPQIRRIVSMIRPDR 363

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET--IEHCFVATYAQYSKKCALLQ 236
           QTL+FSAT   E++ ++++FL +P  + V +    A +  I+   V    +  +K     
Sbjct: 364 QTLMFSATWPKEVRTLAKDFLSDPVFVNVGSLKLAANSNIIQLVTVVEENEKEEKLLEFL 423

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               S+   K  +IF   K+    L   + K+G+   ++HG+  Q  R  ++++FK G  
Sbjct: 424 NRTSSEQHCKT-LIFVGMKRTADWLTRLIRKKGYPALSLHGDKSQTERNFVMNDFKNGEC 482

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+ D+ +V NFD P   E+YIHRIGRT R  + G ++TL  + D   
Sbjct: 483 SILVATDVAARGLDVNDIKYVINFDCPKNIEDYIHRIGRTARHDKTGTSYTLCTRSDAPI 542

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
           ++ +  ++++    +  DL  L
Sbjct: 543 VNELVSVLKEAKQTVPSDLLDL 564


>gi|170091668|ref|XP_001877056.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648549|gb|EDR12792.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 396

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 131/370 (35%), Positives = 201/370 (54%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++  +    + KP+ IQ + I  + Q  DV   AQ+GTGKTA+F    ++I
Sbjct: 25  FDDLGLKEDLLRGIYAYNFEKPSAIQQRAILPITQGRDVIAQAQSGTGKTATF---SISI 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     VR  + L+L PTRELA Q+       G   N+     IGG       +KLE G
Sbjct: 82  LQSIDVTVRETQALVLSPTRELATQIQSVVLALGDYMNVQCHACIGGTSIGEDIRKLEYG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I ++   +P   Q +L
Sbjct: 142 QHVVSGTPGRVFDMIRRRSLRTRNIKMLVLDEADELLNKGFKDQIYDVYRYLPPATQVIL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 202 LSATLPYDVLEMTTKFMTDPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTL- 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   +    F+V ++HG + Q+ R  I++ F+ GT +++
Sbjct: 261 ----TITQAVIFCNTRRKVDWLTEKMRASNFTVSSMHGEMVQKERDAIMAEFRGGTSRVL 316

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  
Sbjct: 317 ITTDVWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTVDDVRILRD 376

Query: 360 IEKLIEKKVD 369
           IE+    ++D
Sbjct: 377 IEQFYSTQID 386


>gi|90020294|ref|YP_526121.1| ATP-dependent RNA helicase DbpA [Saccharophagus degradans 2-40]
 gi|89949894|gb|ABD79909.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 464

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 214/367 (58%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ +GL P ++  +   GY   TPIQ +++P ++   DV G  +TG+GKTA+F L +L  
Sbjct: 9   FSSIGLQPGLMQNLESLGYNTMTPIQAQSLPNIIAGKDVIGQGKTGSGKTAAFGLGLLNS 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L+  R  V+   +L+L PTRELA QVA    +  +  +N+ V  L GG+PF  Q   LE 
Sbjct: 69  LDVKRFYVQ---SLVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQIGSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ +H  +  L ++ + +LV+DEADRML+MGF   +  I   +P  RQTL
Sbjct: 126 GAHIVVGTPGRVEEHVRKNNLDLSKLSVLVLDEADRMLEMGFQAALDAIIETMPKQRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  +E+Q ++   +  P   +V +   T+ TI+  F         +  L  +LL  
Sbjct: 186 LFSATFPEEIQAIASRIMTAPVMTQVESTHDTS-TIKQRFYKV--DNDDQRLLAVRLLLL 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ ++FCN K+    +   L   GF+  A+HG+++QR R   L  F  G+  ++VA
Sbjct: 243 QHKPESAVVFCNTKRETQMVADDLAGHGFTALALHGDLEQRDRDLTLVRFANGSATVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N+ +    E ++HRIGRTGRAG  G A ++ ++++   +  +E
Sbjct: 303 TDVAARGLDIESLDAVINYHIARDMEVHVHRIGRTGRAGAKGIACSIYSEKEHFKLARLE 362

Query: 362 KLIEKKV 368
           + + ++V
Sbjct: 363 ETMGQQV 369


>gi|326930919|ref|XP_003211585.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Meleagris
           gallopavo]
          Length = 597

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 130/389 (33%), Positives = 214/389 (55%), Gaps = 19/389 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 84  INFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 143

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 144 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGP 199

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 200 QIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 259

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQ-----NPKRIEVNTPSSTAETIEHCFVATYAQYS 229
              RQTL++SAT   E+++++E+FL+     N   +E++   +  + ++ C      +  
Sbjct: 260 RPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCH--DVEKDD 317

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K   L+++++  ++     I+F   K+   +L   + + G+    IHG+  Q+ R  +L+
Sbjct: 318 KLIRLMEEIMSEKENKT--IVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLN 375

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T  
Sbjct: 376 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFF 435

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
              +IK ++ +  ++ +    +N  L  L
Sbjct: 436 TPNNIKQVNDLISVLREANQAINPKLLQL 464


>gi|74835178|dbj|BAE44472.1| Vasa [Botryllus primigenus]
          Length = 687

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 209/371 (56%), Gaps = 21/371 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGR-----ARVRM 72
           A Y KPTP+Q  +IP++    D+   AQTG+GKTA+F+LP+L  I   G      +  + 
Sbjct: 249 ARYTKPTPVQKYSIPIINAGRDLMACAQTGSGKTAAFLLPVLAGIFRSGLKADSFSEKQT 308

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
           P+ +++ PTREL +Q+     K+ +N  +   +  GG   ++Q + L RG ++LI TPGR
Sbjct: 309 PQAIVVGPTRELVSQIFTEARKFARNSVVQPVVAYGGTSVQSQLRDLSRGCNILIATPGR 368

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSATMT 188
           +LD  NRGK+  + +E L++DEADRMLDMGF P I+ +          +R TL+FSAT  
Sbjct: 369 LLDFINRGKVGCDCVEYLILDEADRMLDMGFEPEIRKLLGSPGMPDKNSRHTLMFSATFP 428

Query: 189 DELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
           DE+QK++  F+ ++   + V         +    +       K+  L++ L+   +T   
Sbjct: 429 DEIQKLAHEFMREDFLFLTVGRVGGACSDVTQTLLQV-ENADKREKLMELLVDVPETAAR 487

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            ++F + K+N   L   L ++G    +IHG+  QR R   L++FK+G   +++A+ +AAR
Sbjct: 488 TLVFVDTKRNADFLATFLSQEGLPTTSIHGDRQQREREIALTDFKKGKCPILIATSVAAR 547

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI--- 364
           GLDIP V HV N+D+P+  + Y+HRIGRTGR G  G A +  +  D K+      L+   
Sbjct: 548 GLDIPKVEHVINYDLPSEIDEYVHRIGRTGRCGNLGSATSFYS--DDKNAALARSLVKVL 605

Query: 365 ----EKKVDWL 371
               ++  DWL
Sbjct: 606 SDAQQEVPDWL 616


>gi|330944943|gb|EGH46750.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 420

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 135/377 (35%), Positives = 221/377 (58%), Gaps = 8/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 35  FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 94

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++  N+ V  L GG+ F  Q   LE 
Sbjct: 95  INP---RFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 151

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 152 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTL 211

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F+++P+ ++V    + ++ IE  F     +   + A+++ L   
Sbjct: 212 LFSATYPVGIKQLSSKFMRDPQTVKVEALHADSQ-IEQIFYEISPEQRLE-AVVKVLGHF 269

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T  + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 270 RPT--SCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 327

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 328 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 387

Query: 362 KLIEKKVDWLNGDLSSL 378
           +L +  ++W   D  S+
Sbjct: 388 ELQKAPLNWQQYDRLSI 404


>gi|41055130|ref|NP_957372.1| eukaryotic initiation factor 4A-III [Danio rerio]
 gi|82209617|sp|Q7ZVA6|IF4A3_DANRE RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|28277876|gb|AAH45939.1| Eukaryotic translation initiation factor 4A, isoform 3 [Danio
           rerio]
 gi|182892106|gb|AAI65833.1| Eif4a3 protein [Danio rerio]
          Length = 406

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 207/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 35  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQC 94

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 95  LD---IQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 151

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q  L
Sbjct: 152 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCL 211

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 212 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 270

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 271 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 326

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+  V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 327 ISTDVWARGLDVSQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 386

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 387 IEQYYSTQIDEMPMNVADL 405


>gi|24584399|ref|NP_723899.1| vasa [Drosophila melanogaster]
 gi|12644110|sp|P09052|VASA1_DROME RecName: Full=ATP-dependent RNA helicase vasa, isoform A; AltName:
           Full=Antigen Mab46F11
 gi|7298204|gb|AAF53438.1| vasa [Drosophila melanogaster]
          Length = 661

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 126/361 (34%), Positives = 210/361 (58%), Gaps = 8/361 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++  V  +GY  PTPIQ  +IP++    D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 247 FTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSK 306

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L +    + +  P+ +I+ PTRELA Q+ +   K+     L + ++ GG  F  QN+ + 
Sbjct: 307 LLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECIT 366

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TR 178
           RG  V+I TPGR+LD  +R  +   +   +V+DEADRMLDMGF   ++ I + V      
Sbjct: 367 RGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEH 426

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT  +E+Q+++  FL+N   + +         ++   +    +Y+K+  L++ L
Sbjct: 427 QTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQT-IYEVNKYAKRSKLIEIL 485

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +  D     I+F   K+    L   L ++ F   +IHG+  Q  R + L +FK G++++
Sbjct: 486 SEQADGT---IVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKV 542

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+ +A+RGLDI ++ HV N+D+P++ ++Y+HRIGRTGR G +G+A +    E  + I 
Sbjct: 543 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIA 602

Query: 359 A 359
           A
Sbjct: 603 A 603


>gi|322824367|gb|EFZ29795.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 395

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 210/377 (55%), Gaps = 12/377 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   GY KPT IQ + I    Q  D+   A +G+GKT++F + +L +
Sbjct: 25  FEAMGLKEELLRGMYGYGYKKPTAIQKRFIVPFTQSRDLVAQASSGSGKTSAFCICLLQV 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +     +R  + L+L PTRELA Q  D     G +  L     IGG   E   ++LE G
Sbjct: 85  CQSA---LRETQGLVLSPTRELAMQTQDLCNNIGHHMGLAAYASIGGKSVEDDIRRLESG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L +N+++ LV+DEAD ML  GF   I +I  ++P   Q +L
Sbjct: 142 VQIVSGTPGRVFDMIKRRHLRVNHLKTLVLDEADEMLGKGFKAQIHDIYRMIP-PLQVVL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++ +++E F+  P RI V     T ++I   FVA   +   +   C L   L 
Sbjct: 201 VSATLPVDVLEMTEKFMTEPVRILVRRDEITVDSIMQYFVAVDEEKNKFETLCDLYDTL- 259

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+ + +IFCN +K V  L   + K+ FSV  +HG++ Q  R +I+ NF+EG  +++
Sbjct: 260 ----TIAHAVIFCNTRKKVEQLAKKMRKEKFSVSCMHGDMPQAERDEIMRNFREGKSRVL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++DL +RG+D+  V  V N+D+P   E YIHRIGRTGR GR G A + V  ++++ +  
Sbjct: 316 ISTDLWSRGIDVEQVSLVLNYDLPFSREQYIHRIGRTGRMGRKGLAISFVKHDELRLLRD 375

Query: 360 IEKLIEKKVDWLNGDLS 376
           +E+    +++ L  +++
Sbjct: 376 VEQFYATQIEELPANIA 392


>gi|316976022|gb|EFV59375.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
          Length = 964

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 131/365 (35%), Positives = 209/365 (57%), Gaps = 19/365 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++A  G S +V+  +    Y KPTPIQ + IP +L   DV GIA+TG+GKT +F++PM  
Sbjct: 297 NWAQTGSSRRVMDLLKKYNYEKPTPIQAQAIPAILCGRDVIGIAKTGSGKTLAFLIPMFR 356

Query: 62  -ILEK-------GRARVRMPR------TLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
            +L++       G      P       TLI+ PTRELA Q+A   +K+ +  NL+   + 
Sbjct: 357 HVLDQPPLDDMDGPIGNERPVQYCALVTLIMTPTRELAMQIAKECKKFSRPLNLSTVCVY 416

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFI 164
           GG     Q  +L+RGA++++CTPGR++D    N GK+  +  +  LV+DEADRM DMGF 
Sbjct: 417 GGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGKVTNLRRVTYLVLDEADRMFDMGFE 476

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           P +  I   +   RQT++FSAT   +++ ++   L+ P  I V   S+  + +E   +  
Sbjct: 477 PQVLKIIGNIRPDRQTVMFSATFPRQMEALARKVLEKPIEIIVGNRSTVCQDVEQHAIIV 536

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
             ++  +   L +LL     + N +IF +++++   L   L + G+    +HG +DQ  R
Sbjct: 537 DEEH--RFLKLLELLGVYYELGNILIFVDKQEHADELVADLMRAGYICAPLHGGLDQFDR 594

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
              + +FK G I L++A+ +AARGLD+ ++  V N+D PN  E+Y+HR+GR GRAG  G 
Sbjct: 595 DSTIVDFKNGVITLLIATSVAARGLDVKNMILVVNYDCPNHYEDYVHRVGRCGRAGNKGF 654

Query: 345 AFTLV 349
           A+T +
Sbjct: 655 AYTFI 659


>gi|143636073|gb|ABO93350.1| vasa-like protein [Hydractinia echinata]
          Length = 680

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 130/360 (36%), Positives = 205/360 (56%), Gaps = 14/360 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++ GLS  +   +  A Y+KPTP+Q   IP++L   D+   AQTG+GKTA+F+LP+L  
Sbjct: 225 FSEAGLSESIQKNIEKAKYLKPTPVQKYAIPIILGDRDLMSCAQTGSGKTAAFLLPVLAS 284

Query: 63  LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           + + +       + V+ P  LI+ PTRELA Q+     K+    ++   ++ GG+    Q
Sbjct: 285 IMQHKDQLTSQLSEVQAPLGLIIAPTRELANQIYQEARKFSFQTSVRPVVVYGGVSVAYQ 344

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++++ G  +L+ TPGR+ D   + K+ + N++ LV+DEADRMLDMGF+P ++ I     
Sbjct: 345 LRQVQSGCHLLVGTPGRLKDFIGKRKISLENLKYLVLDEADRMLDMGFMPDVKEIIHGFG 404

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 R TL+FSAT  +E+QK++  FL N   + +    ST   IE   +      SK+
Sbjct: 405 MPAKEDRHTLMFSATFPEEIQKLAGEFLNNYVFLTIGKVGSTHSDIEQTVIEV-DNASKR 463

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L++ L   Q+     ++F   K+    L   L + GF   +IHG+  Q+ R + L  F
Sbjct: 464 DKLVEML--GQEGGNKNLVFVQTKRQADFLASYLCQNGFPTTSIHGDRFQQQREEALREF 521

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G   +++A+ +AARGLDI DV  V N+D+P+  E YIHRIGRTGR G  G+A +  ++
Sbjct: 522 RAGQQTVLIATAVAARGLDIADVKQVINYDLPDEIEEYIHRIGRTGRIGNKGRATSFFSR 581


>gi|328779158|ref|XP_001122489.2| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
           mellifera]
          Length = 616

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 136/387 (35%), Positives = 211/387 (54%), Gaps = 5/387 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP +  
Sbjct: 112 FEEGGFPDYVLNEIHRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 171

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I  + R  R   P  LIL PTRELA Q+      +G +  +    + GG P   Q + LE
Sbjct: 172 INHQPRLNRNDGPIALILAPTRELAQQIQQVASDFGISSQVRNTCIFGGAPKGPQARDLE 231

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 232 RGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQT 291

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E++ ++E FL +  +I + +    A       V    +Y K+  L++ L +
Sbjct: 292 LMWSATWPKEVRNLAEEFLTDYIQINIGSLQLAANHNILQIVDVCEEYEKEGKLMKLLEE 351

Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S +     IIF   K+ V ++  ++ + G+    IHG+  Q+ R  +L+ F+     ++
Sbjct: 352 ISNEPENKTIIFVETKRKVDDITRAINRYGWQAIGIHGDKSQQERDYVLNQFRNSRSAIL 411

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV  V N D P+ +E+Y+HRIGRTGR+ R G A+      +      
Sbjct: 412 VATDVAARGLDVEDVKFVINLDYPSNSEDYVHRIGRTGRSQRTGTAYAFFTPGNAHKASD 471

Query: 360 IEKLIEKKVDWLNGDLSSL--NPPLEK 384
           + +++E+    +N  L  L  NP + K
Sbjct: 472 LIQVLEEAKQVVNPKLYELSRNPGIYK 498


>gi|313885882|ref|ZP_07819622.1| putative DEAD-box ATP-dependent RNA helicase CshA [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924637|gb|EFR35406.1| putative DEAD-box ATP-dependent RNA helicase CshA [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 553

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 212/366 (57%), Gaps = 11/366 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIP-LVLQRHDVCGIAQTGTGKTASFVLPM 59
           M F  L LSP++  A  D G+ +P P+Q + IP L   R D+  +++TG+GKTA++ LP+
Sbjct: 1   MTFDTLDLSPELRRATSDLGFSEPMPVQQEVIPYLSSHRGDLIALSKTGSGKTAAYGLPL 60

Query: 60  L--TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL-LIGGIPFEAQN 116
           L   I  KG A    P  LIL PTRELA QV  +     K  ++   L L GG   E Q 
Sbjct: 61  LERIIQAKGSA----PCGLILTPTRELAIQVQSDLVALAKYTSVRQILALYGGASIEEQI 116

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++L +G  +++ TPGR+ D   R  + +  + ++V+DEAD MLDMGF   +Q I   VP 
Sbjct: 117 RQLAKGYHIIVATPGRLCDLLRRKAVKLRKVSVVVLDEADVMLDMGFQRDLQEILQAVPQ 176

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             +  LFSATM+ E++++++N++ +   +++   +     I+H +VA  A++  K A L+
Sbjct: 177 QVEHWLFSATMSREVREIADNYISDAHEVQIGALNKANADIKHLYVAVPARH--KYAALK 234

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +++     +  GIIFC  +     +   L + G++   +HG++ Q  R  +++ F+   +
Sbjct: 235 RVVDYYPNI-YGIIFCRTRAETKEIAEWLIRDGYNADTLHGDLSQAQRDMVMNRFRIRNL 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           QL+VA+D+AARGLD+ DV HV ++ +P   ++Y HR GRT RAG+ G +  +    D K 
Sbjct: 294 QLLVATDVAARGLDVDDVTHVLHYGLPADPDSYTHRSGRTARAGKTGLSIAICHLRDSKQ 353

Query: 357 IDAIEK 362
           I  IE+
Sbjct: 354 IRIIER 359


>gi|310794364|gb|EFQ29825.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 695

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 136/366 (37%), Positives = 205/366 (56%), Gaps = 23/366 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L
Sbjct: 192 LTFSNPPLDDHLISNIEMARYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPIL 251

Query: 61  ---------TILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                    T+        GR R   P +LIL PTREL +Q+ +   K+     +   ++
Sbjct: 252 SQAFINGPSTVPPNAAGGFGRQRKAYPTSLILAPTRELVSQIYEESRKFAYRSWVRPCVV 311

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 312 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQ 371

Query: 167 IQNITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 372 IRRIVEGEDMPNVQNRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQK-- 429

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             Y +   K ++L  +L +       +IF   K+   +L   L  Q F   +IHG+  QR
Sbjct: 430 VEYVEDVDKRSVLLDILHTHGAGLT-LIFVETKRMADSLSDFLINQNFPATSIHGDRTQR 488

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR- 341
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 489 ERERALEFFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 548

Query: 342 -HGKAF 346
            H  AF
Sbjct: 549 GHSTAF 554


>gi|221483330|gb|EEE21649.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
 gi|221507816|gb|EEE33403.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
          Length = 550

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 132/347 (38%), Positives = 194/347 (55%), Gaps = 13/347 (3%)

Query: 10  PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P  +  V++  G+ KPT IQ++  P+ L   D+ GIA+TG+GKT +F+LP +        
Sbjct: 137 PSYILDVINQTGFQKPTAIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPY 196

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L KG      P  LIL PTREL  Q+      +  +  +  A+  GG+P   Q  +LERG
Sbjct: 197 LNKGDG----PIVLILAPTRELVEQIRAQCRTFAASSKIHHAVAYGGVPKRPQIMELERG 252

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A++ +  PGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   RQTL+
Sbjct: 253 AEICVACPGRLIDFLESRVTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLM 312

Query: 183 FSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +SAT   E+Q ++ +   + P  I V +    A       V    +Y K+  L+  L + 
Sbjct: 313 WSATWPKEVQNLARDLCKEEPVHINVGSLDLQACQNIKQEVMVVQEYEKRGQLMSLLRRI 372

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D  K  +IF   K+   NL   +  +G+   ++HG+  Q  R  +L  FK G   +MVA
Sbjct: 373 MDGSKI-LIFAETKRGADNLTRDMRVEGWPALSLHGDKKQEERTWVLDEFKNGRNPIMVA 431

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +D+A+RGLD+ D+ HV N+D+PN+ E+YIHRIGRTGRAG  G A+T 
Sbjct: 432 TDVASRGLDVKDIRHVINYDMPNQIEDYIHRIGRTGRAGAKGCAYTF 478


>gi|237839461|ref|XP_002369028.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|211966692|gb|EEB01888.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
          Length = 550

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 132/347 (38%), Positives = 194/347 (55%), Gaps = 13/347 (3%)

Query: 10  PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P  +  V++  G+ KPT IQ++  P+ L   D+ GIA+TG+GKT +F+LP +        
Sbjct: 137 PSYILDVINQTGFQKPTAIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPY 196

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L KG      P  LIL PTREL  Q+      +  +  +  A+  GG+P   Q  +LERG
Sbjct: 197 LNKGDG----PIVLILAPTRELVEQIRAQCRTFAASSKIHHAVAYGGVPKRPQIMELERG 252

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A++ +  PGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   RQTL+
Sbjct: 253 AEICVACPGRLIDFLESRVTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLM 312

Query: 183 FSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +SAT   E+Q ++ +   + P  I V +    A       V    +Y K+  L+  L + 
Sbjct: 313 WSATWPKEVQNLARDLCKEEPVHINVGSLDLQACQNIKQEVMVVQEYEKRGQLMSLLRRI 372

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D  K  +IF   K+   NL   +  +G+   ++HG+  Q  R  +L  FK G   +MVA
Sbjct: 373 MDGSKI-LIFAETKRGADNLTRDMRVEGWPALSLHGDKKQEERTWVLDEFKNGRNPIMVA 431

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +D+A+RGLD+ D+ HV N+D+PN+ E+YIHRIGRTGRAG  G A+T 
Sbjct: 432 TDVASRGLDVKDIRHVINYDMPNQIEDYIHRIGRTGRAGAKGCAYTF 478


>gi|149635102|ref|XP_001510775.1| PREDICTED: similar to DDX5 protein [Ornithorhynchus anatinus]
          Length = 682

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 14/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 162 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 221

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 222 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGP 277

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 278 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 337

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 338 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 397

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 398 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 456

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 457 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 516

Query: 353 DIKHI-DAIEKLIE 365
           +IK + D I  L E
Sbjct: 517 NIKQVSDLISVLRE 530


>gi|189242416|ref|XP_001811064.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase
           [Tribolium castaneum]
          Length = 1142

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 138/398 (34%), Positives = 219/398 (55%), Gaps = 17/398 (4%)

Query: 5   DLGLSPKVVCAV-LDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
           D G  P+ +  V L  G+ +PT IQ +  P+VL   D+ GIAQTG+GKT +++LP +  +
Sbjct: 553 DEGNFPEYIMQVILKQGFAEPTAIQSQGWPVVLSGRDLVGIAQTGSGKTLAYMLPAVVHI 612

Query: 64  --EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             ++   R   P  LIL PTRELA Q+     ++G    +    + GG P   Q + LER
Sbjct: 613 NNQQRPQRGEGPVALILAPTRELAQQIQKVAHEFGSTTMVRNTCIFGGSPKGPQARDLER 672

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G +++I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQ L
Sbjct: 673 GVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRPDRQVL 732

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHC--FVATYAQYSKKCALLQQL 238
           ++SAT   ++Q ++E FL +  ++ +   S  A   I+          +  K C LL+++
Sbjct: 733 MWSATWPKQVQALAEEFLVDYIQVNIGGLSLAANHNIKQIVEVCEESEKEEKLCKLLKEI 792

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               D+    I+F   KK V ++   + ++G++  +IHG+  Q  R  +LS F+ G   +
Sbjct: 793 --GSDSCNKIIVFVETKKKVDDITKCIRREGYAAISIHGDKSQPERDYVLSEFRTGKSSI 850

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ DV +V NFD PN +E+Y+HRIGRTGR  + G A+      + +   
Sbjct: 851 LVATDVAARGLDVEDVKYVINFDYPNSSEDYVHRIGRTGRCQQAGTAYAFFTSNNQRQAK 910

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
            +  ++E+         +  N   E  D+AQ++   +N
Sbjct: 911 DLIAVLEE---------AGQNVSAELRDLAQNSRGSQN 939


>gi|156053343|ref|XP_001592598.1| hypothetical protein SS1G_06839 [Sclerotinia sclerotiorum 1980]
 gi|160419162|sp|A7ENE0|PRP5_SCLS1 RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|154704617|gb|EDO04356.1| hypothetical protein SS1G_06839 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1114

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 134/371 (36%), Positives = 207/371 (55%), Gaps = 8/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  K +  +   GY KPT IQ++ IP ++   DV G+A+TG+GKT +F+LPM   
Sbjct: 485 WSQCGLDVKSLDVIKKLGYDKPTSIQMQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRH 544

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R       P  LI+ PTRELA Q+    + + K   L      GG   + Q   L+
Sbjct: 545 IRDQRPLKNSDGPIGLIMTPTRELATQIHKECKPFLKAMGLRAVCAYGGAIIKDQIADLK 604

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR+++    N G++  +  +  +V+DEADRM DMGF P +  + + +   
Sbjct: 605 RGAEIIVCTPGRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNIRPN 664

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSATM   +  +++  LQ+P  I V   S  A  I    V    +  K   LL+ 
Sbjct: 665 RQTILFSATMPRIMDALAKKTLQSPVEIVVGGRSVVAPEITQ-IVEVREEKEKFHRLLEL 723

Query: 238 L--LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L  L + D     +IF ++++   +L   L ++G+   +IHG  DQ  R   + +FK G 
Sbjct: 724 LGELYNADEDARTLIFVDRQEKADDLLKDLMRKGYPCMSIHGGKDQVDRDSTIDDFKAGV 783

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + +M+A+ +AARGLD+  +  V NFD PN  E+Y+HR GRTGRAG  G A T + +E  +
Sbjct: 784 VPIMIATSVAARGLDVKQLKLVVNFDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQEQ 843

Query: 356 HIDAIEKLIEK 366
           +   I K +E+
Sbjct: 844 YSVGIAKALEQ 854


>gi|15228722|ref|NP_188870.1| PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1); ATP-dependent
           helicase/ DNA binding / RNA binding [Arabidopsis
           thaliana]
 gi|75335517|sp|Q9LUW6|RH9_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 9
 gi|9293865|dbj|BAB01768.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
 gi|20268676|gb|AAM14042.1| putative RNA helicase [Arabidopsis thaliana]
 gi|332643099|gb|AEE76620.1| DEAD-box ATP-dependent RNA helicase 9 [Arabidopsis thaliana]
          Length = 610

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 217/376 (57%), Gaps = 10/376 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +  ADLG+SP++V A+   G  K  PIQ   +   ++  D+ G A+TGTGKT +F +P++
Sbjct: 116 LAIADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 175

Query: 61  TILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             + K  A   R + P+ L+L PTRELA QV   F +   +  L    L GG P   Q +
Sbjct: 176 DKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPS--LDTICLYGGTPIGQQMR 233

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G DV + TPGRI+D   RG L ++ ++ +V+DEAD+ML +GF   ++ I   +P  
Sbjct: 234 ELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAK 293

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALL 235
           RQ+++FSATM   ++ +++ +L NP  I++  ++    A+ I    +A  A    + +++
Sbjct: 294 RQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIA--ADSYGRASII 351

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++        I+F   K++   L   L K  +   A+HG+I Q  R + L+ F++G 
Sbjct: 352 GPLVKEHGKGGKCIVFTQTKRDADRLAFGLAKS-YKCEALHGDISQAQRERTLAGFRDGN 410

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+D+AARGLD+P+V  V ++++PN  E ++HR GRTGRAG+ G A  +  ++  +
Sbjct: 411 FSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTR 470

Query: 356 HIDAIEKLIEKKVDWL 371
            +  IEK +  + + L
Sbjct: 471 AVKMIEKEVGSRFNEL 486


>gi|302696869|ref|XP_003038113.1| hypothetical protein SCHCODRAFT_63532 [Schizophyllum commune H4-8]
 gi|300111810|gb|EFJ03211.1| hypothetical protein SCHCODRAFT_63532 [Schizophyllum commune H4-8]
          Length = 396

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 130/370 (35%), Positives = 202/370 (54%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L   ++  +    + KP+ IQ + I  + Q  DV   AQ+GTGKTA+F    ++I
Sbjct: 25  FDDLNLKEDLLRGIYAYNFEKPSAIQQRAILPITQGRDVIAQAQSGTGKTATF---SISI 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     VR  + L+L PTRELA Q+       G   N+     IGG       +KLE G
Sbjct: 82  LQSIDVTVRETQALVLSPTRELATQIQSVVLALGDYMNVQCHACIGGTSVGEDIRKLEYG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I ++   +P   Q +L
Sbjct: 142 QHVVSGTPGRVFDMIRRRSLRTRNIKMLVLDEADELLNKGFKDQIYDVYRYLPPATQVVL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++ ++++ F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 202 LSATLPYDVLEMTQKFMTDPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTL- 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I++ F+ GT +++
Sbjct: 261 ----TITQAVIFCNTRRKVDWLTEKMRQSNFTVSSMHGEMVQKERDAIMAEFRAGTSRVL 316

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  
Sbjct: 317 ITTDVWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTVDDVRILRD 376

Query: 360 IEKLIEKKVD 369
           IE+    ++D
Sbjct: 377 IEQFYSTQID 386


>gi|45382259|ref|NP_990158.1| probable ATP-dependent RNA helicase DDX5 [Gallus gallus]
 gi|5114446|gb|AAD40318.1|AF158370_1 DEAD-box RNA helicase [Gallus gallus]
          Length = 595

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 130/389 (33%), Positives = 214/389 (55%), Gaps = 19/389 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 82  INFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 141

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 142 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGP 197

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 198 QIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 257

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQ-----NPKRIEVNTPSSTAETIEHCFVATYAQYS 229
              RQTL++SAT   E+++++E+FL+     N   +E++   +  + ++ C      +  
Sbjct: 258 RPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCH--DVEKDD 315

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K   L+++++  ++     I+F   K+   +L   + + G+    IHG+  Q+ R  +L+
Sbjct: 316 KLIRLMEEIMSEKENKT--IVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLN 373

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T  
Sbjct: 374 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFF 433

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
              +IK ++ +  ++ +    +N  L  L
Sbjct: 434 TPNNIKQVNDLISVLREANQAINPKLLQL 462


>gi|330900813|gb|EGH32232.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 459

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 134/377 (35%), Positives = 220/377 (58%), Gaps = 8/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++  N+ V  L GG+ F  Q   LE 
Sbjct: 66  INP---RFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPKRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F+++P+ ++V    + ++ IE  F     +   + A+++ L   
Sbjct: 183 LFSATYPAGIKQLSSKFMRDPQTVKVEALHADSQ-IEQIFYEISPEQRLE-AVVKVLGHF 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 241 RPA--SCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 299 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 358

Query: 362 KLIEKKVDWLNGDLSSL 378
           +L +  ++W   D  S+
Sbjct: 359 ELQKAPLNWQQYDRLSI 375


>gi|320038882|gb|EFW20817.1| ATP-dependent RNA helicase DRS1 [Coccidioides posadasii str.
           Silveira]
          Length = 840

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 137/362 (37%), Positives = 199/362 (54%), Gaps = 3/362 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS  ++  +   G+  PTPIQ K IP+ L   D+ G A TG+GKTA+F++P+L  
Sbjct: 321 FQNFNLSRPILRGLAAVGFSAPTPIQRKAIPIGLLGKDLVGGAVTGSGKTAAFIIPILER 380

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++ 
Sbjct: 381 LLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKQR 440

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 441 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILNTIPKSRQTM 500

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMTD + K+    L  P R+ V++   T  T+   FV     +  K+   L  L  
Sbjct: 501 LFSATMTDSVDKLIRVGLNRPVRLMVDSKKHTVGTLVQEFVRLRPGREGKRMGYLVLLCN 560

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  T +  I+F  QKK            G     +HG++ Q  R+  +  F++G +  ++
Sbjct: 561 TIYTNRV-IVFFRQKKEAHRARIIFGLLGLKAAELHGSMSQEQRINAVEAFRDGKVPFLL 619

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + A 
Sbjct: 620 ATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAA 679

Query: 361 EK 362
            K
Sbjct: 680 AK 681


>gi|302911254|ref|XP_003050452.1| hypothetical protein NECHADRAFT_71876 [Nectria haematococca mpVI
           77-13-4]
 gi|256731389|gb|EEU44739.1| hypothetical protein NECHADRAFT_71876 [Nectria haematococca mpVI
           77-13-4]
          Length = 688

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 136/347 (39%), Positives = 200/347 (57%), Gaps = 25/347 (7%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--------------E 64
           A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+                +
Sbjct: 215 AHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFINGPSPVPANAAGQ 274

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
            GR R   P +LIL PTREL +Q+ +   K+     +   ++ GG    +Q +++ERG D
Sbjct: 275 FGRQRKAYPTSLILAPTRELVSQIYEESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 334

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--VPFT--RQT 180
           +L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P I+ I     +P T  RQT
Sbjct: 335 LLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPSTQDRQT 394

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT   ++Q ++ +FL++   + V    ST+E I       Y +   K ++L  +L 
Sbjct: 395 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQ--KVEYVEDVDKRSVLLDILH 452

Query: 241 SQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              T   G  +IF   K+   +L   L  Q F   +IHG+  QR R + L  F+ G   +
Sbjct: 453 ---THAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEFFRNGRCPI 509

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           +VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G A
Sbjct: 510 LVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIA 556


>gi|261204203|ref|XP_002629315.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           dermatitidis SLH14081]
 gi|239587100|gb|EEQ69743.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           dermatitidis SLH14081]
 gi|239614347|gb|EEQ91334.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           dermatitidis ER-3]
          Length = 804

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 126/383 (32%), Positives = 203/383 (53%), Gaps = 33/383 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A+ GL  +++  +   GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L  
Sbjct: 365 WAESGLPKRLLNIIEQVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVY 424

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +       E    R   P  +IL PTRELA Q+    +K+       V  ++GG   E Q
Sbjct: 425 IAELPRLDEFEWRRNDGPYAIILAPTRELAQQIELEAKKFSAPLGFNVVSIVGGHSLEEQ 484

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  GA+++I TPGR++D   R  ++ +    +++DEADRM+D+GF   +  I   +P
Sbjct: 485 AYSLRNGAEIIIATPGRLVDCIERRMIVFSQCCYVIMDEADRMIDLGFEEPVNKILDALP 544

Query: 176 FT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
            T                         RQT++++ATM   +++++  +L+ P  + +   
Sbjct: 545 VTNQKPDTEDAENPQAMSQHIGGKDRYRQTMMYTATMPPAVERIARKYLRRPAIVTIGNI 604

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               +T+E   V   +   K+   L ++L S++     I+F N K+N   +   ++  G+
Sbjct: 605 GEAVDTVEQR-VEFISGEDKRKKRLAEILSSREFRPPIIVFVNIKRNCDAVARDIKNMGY 663

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    ENY 
Sbjct: 664 SSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIENYT 723

Query: 331 HRIGRTGRAGRHGKAFTLVAKED 353
           HRIGRTGRAG+ G A T +  ED
Sbjct: 724 HRIGRTGRAGKSGIAITFLGNED 746


>gi|302845088|ref|XP_002954083.1| hypothetical protein VOLCADRAFT_82651 [Volvox carteri f.
           nagariensis]
 gi|300260582|gb|EFJ44800.1| hypothetical protein VOLCADRAFT_82651 [Volvox carteri f.
           nagariensis]
          Length = 612

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 135/346 (39%), Positives = 195/346 (56%), Gaps = 18/346 (5%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEKG-------RARVRM 72
           + KPTP+Q  +I + L   D+   AQTG+GKTA+F  P++ ++L KG        +R  +
Sbjct: 175 FTKPTPVQKHSITIGLAGRDLMACAQTGSGKTAAFCFPIIASMLLKGYQPAAGRNSRKAL 234

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
           P  L+L PTREL +Q+ D   K+     L   ++ GG P   Q + LERG D+L+ TPGR
Sbjct: 235 PGALVLAPTRELTSQIYDEARKFTYMTGLRPVVIYGGAPAPNQLRDLERGCDILVATPGR 294

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS---LVPF-TRQTLLFSATMT 188
           + D   RG++ +++I  L +DEADRMLDMGF P I+ I     + P   RQTL+FSAT  
Sbjct: 295 LSDFIERGRVGLSSILFLCLDEADRMLDMGFEPQIRRIVEQEDMPPVGQRQTLMFSATFP 354

Query: 189 DELQKVSENFLQNPKRIEVN-TPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
            E+Q+++ +FL N   + V    SST   ++H     Y    +K   L  L+ + + +  
Sbjct: 355 KEIQRLAADFLSNYVFLTVGRVGSSTDLIVQHI---EYVSSDEKQNTLLDLISTVEGLT- 410

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            ++F   K+    L   L +      +IHG+  Q  R   L +FK G   +MVA+D+AAR
Sbjct: 411 -LVFVETKRGADELERILTRNQLPATSIHGDRSQEQREMALRSFKSGKTPVMVATDVAAR 469

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           GLDIP V HV N+D+P   ++Y+HRIGRTGRAG  G A       D
Sbjct: 470 GLDIPHVTHVINYDLPKDIDDYVHRIGRTGRAGHKGLATAFFTDAD 515


>gi|257482474|ref|ZP_05636515.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330984618|gb|EGH82721.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009703|gb|EGH89759.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 459

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 218/373 (58%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++  N+ V  L GG+ F  Q   LE 
Sbjct: 66  INP---RFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F+++P+ ++V    + ++ IE  F     +   + A+++ L   
Sbjct: 183 LFSATYPVGIKQLSSKFMRDPQTVKVEALHADSQ-IEQIFYEISPEQRLE-AVVKVLGHF 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 241 RPA--SCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 299 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 358

Query: 362 KLIEKKVDWLNGD 374
           +L +  ++W   D
Sbjct: 359 ELQKAPLNWQQYD 371


>gi|156846782|ref|XP_001646277.1| hypothetical protein Kpol_1032p11 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380605|sp|A7TGW7|DBP10_VANPO RecName: Full=ATP-dependent RNA helicase DBP10
 gi|156116952|gb|EDO18419.1| hypothetical protein Kpol_1032p11 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 977

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 134/420 (31%), Positives = 221/420 (52%), Gaps = 55/420 (13%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G S  ++  V   G+ +PTPIQ KTIPL+LQ+ D+ G+A+TG+GKTA+FVLPM+  
Sbjct: 123 FPSFGFSKLILSNVHKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK 182

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   +++   R +IL P+RELA Q    F+++ K  +L   LL GG   E Q   +   
Sbjct: 183 LKSHSSKI-GARAVILSPSRELALQTHRVFKEFSKGTHLRSVLLTGGDSLEDQFSMMMSN 241

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR L       L +  +E +V DEADR+ +MGF   +  + + +P  RQTLL
Sbjct: 242 PDVIVATPGRFLHLKVEMSLDLKTVEYVVFDEADRLFEMGFQEQLNELLAALPMNRQTLL 301

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK--CALLQQLLQ 240
           FSAT+   L   ++  L NP  + ++  +  +E +E  F++T  +  +     LLQ +++
Sbjct: 302 FSATLPSSLVDFAKAGLTNPVLVRLDAETKISENLEILFLSTKNEERENNLLYLLQDVIK 361

Query: 241 -----------------------SQDTMKNG----------------------------- 248
                                  S+D    G                             
Sbjct: 362 IPLGTDDQIKKLSDFNKSLSDSDSEDEDNKGKQNSRKSKKGKFQKLKVSASNELPTEKST 421

Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           I+F   + +V  +   L+  GF V  ++G +DQ +R + L NF+ G   ++V +D+AARG
Sbjct: 422 IVFAPTRHHVEYITQLLKDSGFLVSYLYGTLDQHARKRQLLNFRAGLTSILVVTDVAARG 481

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           +DIP + +V N+ +P  ++ +IHR+GRT RAG  G A+++V++ ++ ++  +E  + KK+
Sbjct: 482 VDIPMLANVINYSLPASSKIFIHRVGRTARAGNRGWAYSIVSETELPYMLDLELFLGKKI 541


>gi|327356974|gb|EGE85831.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 798

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 126/383 (32%), Positives = 203/383 (53%), Gaps = 33/383 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A+ GL  +++  +   GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L  
Sbjct: 359 WAESGLPKRLLNIIEQVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVY 418

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +       E    R   P  +IL PTRELA Q+    +K+       V  ++GG   E Q
Sbjct: 419 IAELPRLDEFEWRRNDGPYAIILAPTRELAQQIELEAKKFSAPLGFNVVSIVGGHSLEEQ 478

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  GA+++I TPGR++D   R  ++ +    +++DEADRM+D+GF   +  I   +P
Sbjct: 479 AYSLRNGAEIIIATPGRLVDCIERRMIVFSQCCYVIMDEADRMIDLGFEEPVNKILDALP 538

Query: 176 FT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
            T                         RQT++++ATM   +++++  +L+ P  + +   
Sbjct: 539 VTNQKPDTEDAENPQAMSQHIGGKDRYRQTMMYTATMPPAVERIARKYLRRPAIVTIGNI 598

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               +T+E   V   +   K+   L ++L S++     I+F N K+N   +   ++  G+
Sbjct: 599 GEAVDTVEQR-VEFISGEDKRKKRLAEILSSREFRPPIIVFVNIKRNCDAVARDIKNMGY 657

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    ENY 
Sbjct: 658 SSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIENYT 717

Query: 331 HRIGRTGRAGRHGKAFTLVAKED 353
           HRIGRTGRAG+ G A T +  ED
Sbjct: 718 HRIGRTGRAGKSGIAITFLGNED 740


>gi|312140568|ref|YP_004007904.1| dead/deah box helicase [Rhodococcus equi 103S]
 gi|311889907|emb|CBH49224.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
          Length = 499

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 194/366 (53%), Gaps = 4/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+   +V A+ D G   P PIQ+ T+P  L   DV G  +TG+GKT +F +P+   
Sbjct: 27  FESLGVPAPIVSALADGGITAPFPIQVDTLPDTLAGRDVLGRGKTGSGKTLAFSIPLAAR 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G+ R   PR L+L PTRELA Q+    E       L V  + GG+    Q K LE G
Sbjct: 87  LAGGKRRPGKPRGLVLAPTRELATQITATLEPLAGALGLRVTTIFGGVSQHRQVKALESG 146

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++  PGR+ D   +  + ++ +E+ ++DEAD M D+GF+P +  I +  P   Q LL
Sbjct: 147 VDIVVACPGRLEDLMKQRFVTLDAVEMTILDEADHMADLGFLPGVTRILTATPSGGQRLL 206

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ + + K+ + FLQN     V+  +S    + H  V   A    K AL+ +L   Q
Sbjct: 207 FSATLDNGVDKLVKRFLQNEVLHSVDEANSPVAAMTH-HVYDVAGVEAKKALVHKLASGQ 265

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F   K     L   L + G     +HGN+ Q +R + L+ F EGT +++VA+
Sbjct: 266 GRR---ILFMRTKHQARKLARQLTESGIPSVDLHGNLSQNARDRNLAAFSEGTARVLVAT 322

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+ + +V  V + D P   + Y+HR GRT RAG  G   T+V  E  K + A+ +
Sbjct: 323 DVAARGVHVDEVELVVHVDPPAEHKAYLHRSGRTARAGSAGDVVTIVLPEQRKDLSALMR 382

Query: 363 LIEKKV 368
               KV
Sbjct: 383 KASIKV 388


>gi|302835930|ref|XP_002949526.1| hypothetical protein VOLCADRAFT_59325 [Volvox carteri f.
           nagariensis]
 gi|300265353|gb|EFJ49545.1| hypothetical protein VOLCADRAFT_59325 [Volvox carteri f.
           nagariensis]
          Length = 722

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 132/385 (34%), Positives = 217/385 (56%), Gaps = 15/385 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           +   GLS +++  +   G+ +P PIQ + +P+++   D  GIA+TG+GKT +FVLPM+  
Sbjct: 75  WTQAGLSSRLLEVLKKRGFDRPLPIQAQALPIIMSGRDCIGIAKTGSGKTMAFVLPMMRH 134

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L++G      P +L++ PTREL AQ+A   + +GK   L    + GG     Q 
Sbjct: 135 IKDQPPLQQGDG----PVSLVIAPTRELVAQIAKEAKAFGKPLGLNALAVFGGSGVANQI 190

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RG +++ CTPGR++D    + GK+  +  +  LV+DEADRM DMGF P I  I   
Sbjct: 191 SELKRGVEIVACTPGRMIDLLVTSNGKITNLRRVTYLVLDEADRMFDMGFEPQITRIVQN 250

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +   RQT++FSAT   +++ ++   L +P  I+V   S   E I   FV    +  +   
Sbjct: 251 IRPDRQTVMFSATFPRQVEVLARKILTDPVEIQVGGRSIVNENITQ-FVEIRPEKERFHR 309

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL+ L +  +  K  +IF +++++  NL   L + G+   ++HG  DQ  R   +++FK 
Sbjct: 310 LLEILGEWYERGKL-LIFVDKQESCDNLFRDLLRYGYPCLSLHGGKDQSDRESTIADFKG 368

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
               ++VA+ +AARGLD+ D+  V N+DVPN  E+Y+HR+GRTGRAG  G A T +  ++
Sbjct: 369 AVCNILVATSIAARGLDVKDLVLVVNYDVPNHHEDYVHRVGRTGRAGAKGTAITFIGPDE 428

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL 378
            ++   + K + +    +  DL  +
Sbjct: 429 ERYAPDLVKALRESGAAIPQDLQRI 453


>gi|156084974|ref|XP_001609970.1| p68-like protein [Babesia bovis]
 gi|154797222|gb|EDO06402.1| p68-like protein [Babesia bovis]
          Length = 529

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 130/385 (33%), Positives = 212/385 (55%), Gaps = 12/385 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F        ++ A+  AG+  PTPIQ++  P+ L   DV GIA+TG+GKT +F+LP +
Sbjct: 108 VSFEHTSFPDYILKAIRAAGFTAPTPIQVQGWPIALSGRDVIGIAETGSGKTLAFLLPAV 167

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                  +L  G      P  L+L PTREL  Q+     ++G +  +  ++  GG+P   
Sbjct: 168 VHINAQHLLRPGDG----PIVLVLAPTRELVEQIRQQCVQFGASSRIKSSVAYGGVPKRQ 223

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  +L+RG ++L+  PGR++D        +  +  LV+DEADRMLDMGF P I+ I S +
Sbjct: 224 QMYELKRGVEILLACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQI 283

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCA 233
              RQTL++SAT   E+Q ++ +  +  + + +N  S   +T  +     +  +  +K +
Sbjct: 284 RPDRQTLMWSATWPREVQSLAHDLCRE-EPVHINVGSLDLKTCHNVSQEVFVIEEHEKRS 342

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L+++L         +IF + KK   ++   L   G+   +IHG+  Q  R  +L+ FK 
Sbjct: 343 QLKKILGQIGQGTKILIFTDTKKTADSITKELRLDGWPALSIHGDKKQEERNWVLNEFKS 402

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +MVA+D+A+RGLD+ DV  V NFD PN+ E+Y+HRIGRTGR G  G ++T +  + 
Sbjct: 403 GKHPIMVATDVASRGLDVRDVKVVINFDFPNQIEDYVHRIGRTGRGGNKGASYTFLTPDK 462

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL 378
            +    + KL+ +    ++ +LS L
Sbjct: 463 NRVARELVKLMREAKQQISPELSKL 487


>gi|71018173|ref|XP_759317.1| hypothetical protein UM03170.1 [Ustilago maydis 521]
 gi|74701966|sp|Q4P9P3|DRS1_USTMA RecName: Full=ATP-dependent RNA helicase DRS1
 gi|46099167|gb|EAK84400.1| hypothetical protein UM03170.1 [Ustilago maydis 521]
          Length = 932

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 145/391 (37%), Positives = 217/391 (55%), Gaps = 46/391 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    LS  V+ A+    + KPTPIQ +TIP+ L   D+   A TG+GKTA+F++P +  
Sbjct: 335 FGAFDLSRPVLRALSSLSFHKPTPIQSRTIPIALAGKDIVAGAVTGSGKTAAFMIPTIER 394

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L   RA+ R P     R LIL PTRELA Q     +   K  ++   L +GG+  ++Q  
Sbjct: 395 L-TWRAKTRTPHEAKSRVLILAPTRELAIQCYSVGKSIAKFTDIRFCLCVGGLSVKSQEA 453

Query: 118 KLERGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP- 175
           +L+   +V+I TPGR++DH  N     +++IEILV+DEADRML+ GF   +  I    P 
Sbjct: 454 ELKLRPEVVIATPGRLIDHVRNSASFTLDDIEILVMDEADRMLEDGFADELNEIVKSCPK 513

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV------------- 222
             RQT+LFSATMTD+++++    L+ P R+ V+   +TA+ +   FV             
Sbjct: 514 GARQTMLFSATMTDDVEQLVRLSLKRPVRLFVDPKRTTAKKLIQEFVRVRGTGTGGVAGA 573

Query: 223 ----------ATY------AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLE 266
                     AT+      ++ +++ ALL  L     T +  +IF   KK    L H L+
Sbjct: 574 DGLSGIQDQPATWISGGRKSEDAQRPALLLSLCTRTFTSQT-MIFVRSKK----LAHQLK 628

Query: 267 ----KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322
                 G S   +HG++ Q  R+  L++F++G    ++A+DLA+RGLDI  V  V N+D+
Sbjct: 629 IVFGLLGLSAGELHGDLSQEQRIDALTDFRDGKTDFLLATDLASRGLDIKGVQTVINYDM 688

Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           P + E Y+HR+GRT RAGR+G+A TLV + D
Sbjct: 689 PGQFEAYLHRVGRTARAGRNGRAVTLVGEAD 719


>gi|300707737|ref|XP_002996065.1| hypothetical protein NCER_100895 [Nosema ceranae BRL01]
 gi|239605329|gb|EEQ82394.1| hypothetical protein NCER_100895 [Nosema ceranae BRL01]
          Length = 528

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 123/325 (37%), Positives = 191/325 (58%), Gaps = 10/325 (3%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-----PR 74
            +  PTPIQ +  P+ L   D+ GIAQTG+GKT SFVLP L      RA++ +     P 
Sbjct: 146 AFTSPTPIQAQGWPMALTGKDMVGIAQTGSGKTLSFVLPALI---HARAQIPLRSGDGPI 202

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTREL  Q+ D F++Y + +N+    + GG+    Q + +  G +V++  PGR++
Sbjct: 203 VLVLAPTRELCLQIKDVFDEYCRFFNMRCTAVYGGVSSYTQKRDISMGCEVVVGCPGRLI 262

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D   +G L  N +  LV+DEADRMLDMGF P ++ I       RQTL++SAT   E++++
Sbjct: 263 DLNEQGALHFNRVTFLVLDEADRMLDMGFEPQLKKIIVNTNPDRQTLMWSATWPKEVRRL 322

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           +EN+++N  ++ + +            V+    + K   L + L + ++  +  IIF N 
Sbjct: 323 AENYMKNFVQLTIGSVELKTNIKIKQIVSVIDSHEKANKLHESLNEKKN--EKVIIFANT 380

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K+   NL   L ++G+   AIHG+  Q  R +I+S+F+ G   +++A+D+AARGLDI +V
Sbjct: 381 KRMCDNLEDDLSRRGYKAVAIHGDKSQNIRDRIISDFRSGYKNILIATDVAARGLDIKNV 440

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRA 339
             V N+D PN  E+Y+HRIGRT R 
Sbjct: 441 ALVINYDFPNNIEDYVHRIGRTARG 465


>gi|254566739|ref|XP_002490480.1| Putative ATP-dependent RNA helicase of the DEAD-box protein family
           [Pichia pastoris GS115]
 gi|238030276|emb|CAY68199.1| Putative ATP-dependent RNA helicase of the DEAD-box protein family
           [Pichia pastoris GS115]
 gi|328350871|emb|CCA37271.1| ATP-dependent RNA helicase [Pichia pastoris CBS 7435]
          Length = 1003

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 139/423 (32%), Positives = 226/423 (53%), Gaps = 58/423 (13%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  GLS  ++  +   GY +PTPIQ KT+PL++   DV G+A+TG+GKTA+F+LP++  
Sbjct: 117 FASFGLSKFLLGNIARKGYRQPTPIQRKTMPLIMSNRDVVGMARTGSGKTAAFLLPLVEK 176

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+V + R +IL P+RELA Q    F+++ +  NL   LLIGG   E Q   +   
Sbjct: 177 LKVHSAKVGI-RAIILSPSRELAVQTFRQFKEFSRGTNLRAMLLIGGDSMEDQFGAMMSN 235

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV+I TPGR L       L + +IE +V DEADR+ +MGF   +  + + +P  RQ+LL
Sbjct: 236 PDVVIATPGRFLHLKVEMSLDLKSIEYVVYDEADRLFEMGFAEQLNELLAALPHRRQSLL 295

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQYSKKCALLQQL-- 238
           FSAT+   L   ++  L NP  + ++  S+ ++ +E  F+++    +      LLQ++  
Sbjct: 296 FSATLPSSLINFAKAGLINPVLVRLDAESTISDQLEMAFISSKDNEREGNLLYLLQEVIK 355

Query: 239 --LQSQDTMK--------------------------NG---------------------- 248
             L S D +K                          NG                      
Sbjct: 356 MPLASSDQLKQIAEGDEDDEDEETQENDYNNRNKSGNGSRKAPRFNRSLRLPRATDLPTP 415

Query: 249 ---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F   K +V  +   L+K G++V   +G++DQ +R + L NF+ G   ++V +D+A
Sbjct: 416 HSTIVFVPTKHHVEFITTLLKKIGYAVAYTYGSLDQHARRQQLLNFRAGIATVLVVTDVA 475

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARG+DIP + +V NF +P  ++ ++HR+GRT RAG  G A+++V   ++ ++  +E  + 
Sbjct: 476 ARGIDIPVLANVINFSLPASSKIFVHRVGRTARAGHRGWAYSIVQDRELPYLLDLELFLG 535

Query: 366 KKV 368
           +KV
Sbjct: 536 RKV 538


>gi|291241720|ref|XP_002740759.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Saccoglossus kowalevskii]
          Length = 1091

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 145/449 (32%), Positives = 237/449 (52%), Gaps = 19/449 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S KV+  +    Y KPTPIQ + IP ++   ++ GIA+TG+GKT +F+LPM   
Sbjct: 426 WVQCGVSKKVLDVLKKLKYEKPTPIQAQAIPAIMSGRNLIGIAKTGSGKTLAFLLPMFRH 485

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++        P  +I+ PTRELA Q+    +++ +  N+    + GG     Q  +L+
Sbjct: 486 IMDQDPLEADDGPLAVIMSPTRELAMQIYKECKRFCRALNVRGVCVYGGTGISEQIAELK 545

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +     +V+DEADRM DMGF P +  I   +   
Sbjct: 546 RGAEIIVCTPGRMIDMLTANSGRVTNLRRCTYVVLDEADRMFDMGFEPQVMRIVDNIRPD 605

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSAT   +++ ++   L  P  ++V   S     +E   VA      K   LL+ 
Sbjct: 606 RQTVMFSATFPRQMEALARRILNKPLEVQVGGRSVVCSDVEQK-VAIVDDDQKFLTLLEL 664

Query: 238 L--LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L   Q Q ++   ++F  +++    L   L K  +S  ++HG IDQ  R   + +FK G 
Sbjct: 665 LGVYQEQGSV---LVFVEKQEGADQLLKDLMKASYSCLSLHGGIDQYDRDSAIQDFKAGN 721

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+L++A+ +AARGLD+  +  V N+D PN  E+Y+HR+GRTGRAG  G AFT +  E  +
Sbjct: 722 IKLLIATSVAARGLDVKHLVLVVNYDCPNHYEDYVHRVGRTGRAGNKGNAFTFITPEQGR 781

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           +   I K  E        +L  L     +   A+     K++    K   FD  +K  ++
Sbjct: 782 YAGDIIKAFEMADKKAPPELLQLWSEFTEKQKAEGKSIMKSSGFSGKGFKFDETEKELAN 841

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLG 444
           +K        +K+ K    +Q++D +  G
Sbjct: 842 EK--------KKLQKAALGLQDSDEEDAG 862


>gi|321479177|gb|EFX90133.1| hypothetical protein DAPPUDRAFT_300157 [Daphnia pulex]
          Length = 404

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 207/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  V++  DV   AQ+GTGKTA+F + +L  
Sbjct: 33  FDSMGLREDLLRGIYAYGFEKPSAIQQRAIAPVIKGRDVIAQAQSGTGKTATFSISILQS 92

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    + R  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 93  LE---IQTRETQILVLSPTRELAVQIQKVILALGDYMNVQCHACIGGTNVGEDVRKLDYG 149

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L   +I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 150 QHIVSGTPGRVFDMIRRRTLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 209

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 210 LSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 268

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 269 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDTIMKEFRNGQSRVL 324

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 325 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRD 384

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    +VD +  +++ L
Sbjct: 385 IEQYYATQVDEMPMNVADL 403


>gi|251793198|ref|YP_003007926.1| ATP-dependent RNA helicase RhlB [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534593|gb|ACS97839.1| ATP-dependent RNA helicase RhlB [Aggregatibacter aphrophilus
           NJ8700]
          Length = 433

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 140/403 (34%), Positives = 221/403 (54%), Gaps = 12/403 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FADL L P V+ A+   G+   TPIQ  ++P+ LQ  DV G AQTGTGKT +F+  +   
Sbjct: 25  FADLPLHPLVLQALTTKGFDFCTPIQALSLPVTLQGKDVAGQAQTGTGKTIAFLTALFHH 84

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +          PR L+L PTRELA Q+  + + + K      AL  GG  ++ Q K +E
Sbjct: 85  LLTHPTETDKNQPRALVLAPTRELAVQIEHDAQIFLKTTQFKTALAYGGDGYDKQLKAIE 144

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ- 179
            G DVLI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P  +Q 
Sbjct: 145 NGVDVLIGTTGRVIDYVKQGIIRLDRIQVVVLDEADRMFDLGFIRDIRYLLRKCPSPQQR 204

Query: 180 -TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237
            T+LFSAT++ ++++++   + +P+ +E+     T   I E  F  +     +    L +
Sbjct: 205 LTMLFSATLSYKVRELAFEDMNDPEYVEIAPEQKTGRQIKEELFYPSNQDKIRLLLTLLE 264

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               +      IIF N K     +   L   G  V  + G++ Q+ R+ +L  F +G + 
Sbjct: 265 EEWPE----RCIIFANTKHQCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGELD 320

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL I +V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   ++   ++
Sbjct: 321 ILVATDVAARGLHIAEVTHVFNYDLPDDREDYVHRIGRTGRAGESGISISFACEQYAMNL 380

Query: 358 DAIEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNN 397
            AIE+ I   +     D ++L    P   +I  A   H   NN
Sbjct: 381 PAIEEYIGHSIPVSQYDPNALLQDIPKPYRIKRATSTHRISNN 423


>gi|224137340|ref|XP_002322533.1| predicted protein [Populus trichocarpa]
 gi|222867163|gb|EEF04294.1| predicted protein [Populus trichocarpa]
          Length = 443

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 140/367 (38%), Positives = 204/367 (55%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL  ++V A  + G+ KPT IQ + IP  LQ  D+ G+A TG+GKT +FVLP L  
Sbjct: 12  FADLGLCKELVEACENLGWKKPTKIQEEAIPYALQGKDLIGVAATGSGKTGAFVLPTLEA 71

Query: 63  LEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + K    R  V+     +L PTRELA Q+A+ FE  G    +   +L+GG     Q+  L
Sbjct: 72  ILKDSQERKSVQPFFVCVLSPTRELAIQIAEQFEALGSGIGVRCVVLVGGEDMLQQSIVL 131

Query: 120 -ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            ++   V++ TPGR+ DH +  K   ++ ++ L++DEADR+L M F   +  I   +P  
Sbjct: 132 AKKRPHVIVGTPGRLADHLSNTKGFSLHALKYLILDEADRLLSMDFEKSLDEILKAIPRN 191

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R+T LFSATMT++  K+    L+NP +IE     S  +T+E  F    A   K C L+  
Sbjct: 192 RRTYLFSATMTNKAGKLQRACLRNPVKIEAAFKYSIVDTLEQGFYFMPAAL-KDCYLVHV 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L  S       ++F    +    L   L K G     I+G + Q +R+  L+ FK G   
Sbjct: 251 L--SSKKGATSMVFTRTCRETDFLALVLRKLGLGAIPINGQMSQSNRLGALNKFKAGEFN 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ +D+A+RGLDI  V  V N+++P  A++Y HR+GRT RAGR G A +LV + DI   
Sbjct: 309 ILICTDVASRGLDILSVDVVVNYNIPTNAKDYFHRVGRTARAGRSGLAISLVNQFDIGPF 368

Query: 358 DAIEKLI 364
             IEK I
Sbjct: 369 KQIEKHI 375


>gi|156389356|ref|XP_001634957.1| predicted protein [Nematostella vectensis]
 gi|156222046|gb|EDO42894.1| predicted protein [Nematostella vectensis]
          Length = 794

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 141/445 (31%), Positives = 236/445 (53%), Gaps = 15/445 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A  G+  K++  +    Y KPTPIQ + IP+++   D+ GIA+TG+GKT +F++PM   
Sbjct: 139 WAQTGVQLKILDVLKKNSYEKPTPIQAQAIPVIMSGRDMIGIAKTGSGKTLAFLIPMFRH 198

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +  +    R   P  +++ PTRELA Q+    +K+ K  NL    + GG     Q  +L+
Sbjct: 199 IKDQPPLEREEGPIAIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYGGTGISEQIAELK 258

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIE---ILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D        + N +    LV+DEADRM DMGF P +  I   +   
Sbjct: 259 RGAEIIVCTPGRMIDMLTANNGRVTNCQRCTYLVLDEADRMFDMGFEPQVMRIIDCIRPD 318

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSAT   +++ ++   L  P  I+V   S     +E   V    +   K   L +
Sbjct: 319 RQTVMFSATFPRQMEALARKILDKPIEIQVGGRSVVCSDVEQNVVVI--EEDDKFLKLLE 376

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL       + ++F  ++ +  +L   L K+ +   ++HG +DQ  R   +++FK G  +
Sbjct: 377 LLGLYQEQGSVLVFVEKQDSADSLFKDLLKRSYPCLSLHGGMDQFDRDSTIADFKNGVTK 436

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           LM+A+ +AARGLD+  +  V N+D PN  E+Y+HR+GRTGRAG  G A+T +  E  +  
Sbjct: 437 LMIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRVGRTGRAGNKGTAYTFLTPEQGRFA 496

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             + K +E   + +  D+ +L     +   A+  +  KN+    K   F+  +K   S  
Sbjct: 497 IDVIKALEMAENPVPEDVRNLANTYIETRKAEGKNIVKNSGFSGKGFKFNDEEKAKVS-- 554

Query: 418 SHIPLKESEKISKLQQDIQENDADS 442
                 E++KI K    +Q++D ++
Sbjct: 555 ------EAKKIQKWALGLQDSDDEA 573


>gi|298208437|ref|YP_003716616.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
 gi|83848360|gb|EAP86229.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
          Length = 372

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 218/365 (59%), Gaps = 9/365 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61
           F+DLG+SPK+V  + + G + PT IQ + IP++L++  D  G AQTGTGKTA++ LPML 
Sbjct: 4   FSDLGISPKLVKGLTELGIINPTEIQEQAIPVLLEKPTDFVGQAQTGTGKTAAYGLPMLE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNKKLE 120
           ++   +  V+    L+L PTRELA QV+    K+ K  +   +  + GG   + Q K L+
Sbjct: 64  LINASKNHVQ---ALVLCPTRELAMQVSKQLFKFTKYSDKIFSETVYGGAQIDKQIKALQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   +++ TPGR++D   +  + + N++ +V+DEAD ML MGF   +  I S +P T+  
Sbjct: 121 RPTHIIVATPGRLVDLMKKKVVDLTNVKTVVLDEADEMLSMGFKKDLDTILSALPATKNR 180

Query: 181 LLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LFSAT+ + ++++  + L  N  +I+V+  +   + IEH ++    + + K   L Q L
Sbjct: 181 WLFSATLPEGIRQIINSHLSSNAIKIKVSGKNVVNKKIEHKYI--LVEDADKLTTLLQYL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +   + GI+FC  K     L   L  +  S  AIHG++ Q+ R K++  FK  +++++
Sbjct: 239 KFKGK-ERGIVFCKTKNTTKTLAKQLIAKNISADAIHGDLLQKERDKVMRAFKNESLRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DL ARG+D+ D+  V ++++P++ E Y HR GRT RAG+ G +  +V  +++K +  
Sbjct: 298 VATDLTARGIDVEDLAFVVHYELPSQDEFYTHRSGRTARAGKEGMSLAIVNSKELKQLRF 357

Query: 360 IEKLI 364
            EK +
Sbjct: 358 FEKTL 362


>gi|142982528|sp|A2QAX7|DRS1_ASPNC RecName: Full=ATP-dependent RNA helicase drs1
 gi|134055839|emb|CAK37361.1| unnamed protein product [Aspergillus niger]
          Length = 824

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 141/361 (39%), Positives = 201/361 (55%), Gaps = 10/361 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS  ++  +    +  PTPIQ KTIP+ L   D+ G A TG+GKTA+FV+P+L  
Sbjct: 311 FQEFNLSRPILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILER 370

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++ 
Sbjct: 371 LLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKR 430

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 431 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTM 490

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMTD + K+    L  P R+ V+   +TA T+   FV     +  K+   L  L +
Sbjct: 491 LFSATMTDTVDKLIRVGLNRPVRLMVDAKKNTAVTLVQEFVRLRPGREDKRLGYLLYLCK 550

Query: 241 SQDTMKNGIIFCNQKKNV--VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              T +  I+F  QKK    V +   L   G     +HG++ Q    + + NF+EG    
Sbjct: 551 EIYTGRV-IVFFRQKKEAHRVRIIFGL--LGLKAAELHGSMSQE---QSVENFREGKAAF 604

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + 
Sbjct: 605 LLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVK 664

Query: 359 A 359
           A
Sbjct: 665 A 665


>gi|84394007|ref|ZP_00992745.1| DNA and RNA helicase [Vibrio splendidus 12B01]
 gi|84375344|gb|EAP92253.1| DNA and RNA helicase [Vibrio splendidus 12B01]
          Length = 412

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 139/366 (37%), Positives = 205/366 (56%), Gaps = 7/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+ K V A+  + + KPT IQ   IP ++   DV  +AQTG+GKT +F LP+L
Sbjct: 1   MSFDNLTLNAKTVTAI-PSQFDKPTEIQQAVIPSIIAGKDVLALAQTGSGKTLAFGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      V   + LI+ PTRELA+QV ++ E      N+ +  L GG+  + Q ++L 
Sbjct: 60  NNINHD---VNGLQALIIVPTRELASQVTESLEPVATALNIKLVTLTGGVNTDDQQQQLL 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               + I TPGR+L      +L +     LV+DEADR++DMGF P IQ IT+ +P  RQ+
Sbjct: 117 TQPQLAIATPGRLLALIKSSELDVTQCVSLVLDEADRLIDMGFWPDIQAITAALPSKRQS 176

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL   +E  L NP ++  +  +S   TIE        + SK  AL+   L 
Sbjct: 177 LLFSATLPSELVSQAELLLSNPVKVSTHQENSVVATIEETLYLVN-KGSKAQALIA--LL 233

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +Q T    ++F   K N   L   L K   +V A+HGN  Q  R + L +FK G  ++++
Sbjct: 234 NQHTWPQVLVFIGAKDNADALTKRLNKSKINVSALHGNKSQEEREQALESFKNGETRVLI 293

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+ I  +  V NFD+P  +  Y+HR+GRT RAG  G A +LV+  +  +++AI
Sbjct: 294 ATDVMARGIHIDQLPVVINFDLPTHSATYVHRVGRTARAGSTGCAISLVSHSETDYLNAI 353

Query: 361 EKLIEK 366
             L  K
Sbjct: 354 RTLTNK 359


>gi|67624257|ref|XP_668411.1| RNA-dependent helicase [Cryptosporidium hominis TU502]
 gi|54659606|gb|EAL38175.1| similar to RNA-dependent helicase p68 (DEAD-box protein p68)
           (DEAD-box protein 5) [Cryptosporidium hominis]
          Length = 406

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 135/384 (35%), Positives = 211/384 (54%), Gaps = 10/384 (2%)

Query: 22  VKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM---PRTLIL 78
           ++PT IQ++  P+ L  HD+ GIA+TG+GKT  F+LP + I  + +  +R    P  L+L
Sbjct: 9   LEPTAIQVQGWPVALSGHDMIGIAETGSGKTLGFLLPAM-IHIRAQPLLRYGDGPICLVL 67

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTREL  Q+ +   ++G  + L    + GG+P   Q   +  G ++ I  PGR++D   
Sbjct: 68  APTRELVEQIREQANQFGSIFKLRNTAIYGGVPKRPQQASIRNGVEICIACPGRLIDLLE 127

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
            G   ++ +  LV+DEADRMLDMGF P I+ + S +   RQTLL+SAT   E+QK++ + 
Sbjct: 128 EGYTNLSRVTYLVLDEADRMLDMGFEPQIRKLVSQIRPDRQTLLWSATWPKEVQKLARDL 187

Query: 199 LQNPKRIEVNTPSSTAETIEHC---FVATYAQYSKKCALLQQLLQSQ-DTMKNGIIFCNQ 254
            +    I +N  S  A    H    +V    +  KK  L   L Q   ++    +IFC  
Sbjct: 188 CKEIP-IHINVGSVDALKASHNIKQYVNVVEESEKKARLKMFLGQVMVESAPKVLIFCET 246

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K+    L   L   G+    IHG+  Q  R  +L+ F+ G   +M+A+D+AARGLDI D+
Sbjct: 247 KRGADILTKELRLDGWPALCIHGDKKQEERTWVLNEFRTGASPIMIATDVAARGLDIKDI 306

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
             V NFD PN+ E+YIHRIGRTGRAG  G + +    +  +    + K++++    +  +
Sbjct: 307 NFVINFDFPNQIEDYIHRIGRTGRAGATGVSLSFFTPDKYRMASDLIKVLKEAKQRIPPE 366

Query: 375 LSSLNPPLEKIDIAQHNHARKNNP 398
           L  L+P  +++   ++   R+NNP
Sbjct: 367 LFKLSPQNKRMH-PRNTGFRRNNP 389


>gi|168046775|ref|XP_001775848.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672855|gb|EDQ59387.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 482

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 143/426 (33%), Positives = 230/426 (53%), Gaps = 27/426 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL+  +V A  + G  +PT +Q   +P +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 46  FEGLGLTDWLVRACKELGMKRPTLVQQGCVPQILAGKDVFGLAQTGSGKTAAFALPILQK 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    V     L+L PTRELA Q++D F+  G   NL   +++GG+    Q K L + 
Sbjct: 106 LAENPYGVF---ALVLTPTRELAFQISDQFKALGSEVNLRSTVVVGGMDMTTQAKALMQR 162

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEI---------LVIDEADRMLDMGFIPYIQNITSL 173
             ++I TPGR+ DHF      MN+  I         LV+DEADR++D+GF   ++++   
Sbjct: 163 PHIVIATPGRLRDHF------MNDPGIPDVFAKAKYLVLDEADRLMDVGFESELRSVFET 216

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQTLLFSATMT  L+ + +  L      +      T E ++  ++ T A    K  
Sbjct: 217 MPSNRQTLLFSATMTSNLKALHDLSLDKAFFYQQYEGFKTVEALQQQYILTPANV--KDV 274

Query: 234 LLQQLLQS--QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
            L  ++ +  +  +++ IIF +  +    L   + +      A+H    Q+ R+  LS F
Sbjct: 275 YLMHIMSTLEERKIRSVIIFASSCRTCHLLSLMMSELEVDTTALHSMKTQQQRLASLSRF 334

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G + +++A+D+A+RGLDIP V  V N+D+P    +Y+HR+GRT RAGR G A +L+ +
Sbjct: 335 KSGQVSILIATDVASRGLDIPTVDLVINYDIPRFTRDYVHRVGRTARAGRGGSAVSLITQ 394

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            D++ +  IE+L+ KK++    D   +   + K+       A++   +    +GF+ + K
Sbjct: 395 YDVQLVQDIEELLGKKLEEYELDEDKVLKSITKV-----YKAKRVAMLKIVDSGFEDKVK 449

Query: 412 NYSSQK 417
               QK
Sbjct: 450 TRKEQK 455


>gi|83318931|emb|CAJ38803.1| Vasa protein isoform [Platynereis dumerilii]
          Length = 732

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 143/398 (35%), Positives = 220/398 (55%), Gaps = 21/398 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F    LS  V   V  A Y +PTPIQ   IP+VL   D+ G AQTG+GKTA+F+LP+L
Sbjct: 290 LNFDQADLSETVRSNVRKAKYDRPTPIQKWAIPIVLSGKDLMGCAQTGSGKTAAFLLPVL 349

Query: 61  TILEK--------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
           T + K        G    + P  +I+ PTREL  Q+     K+  +  +   ++ GG   
Sbjct: 350 TGIIKNDLIEGGSGFGGPQYPAAIIVGPTRELVNQIYLEARKFASSTCVRPVVVYGGTSV 409

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q ++LE+GA V++ TPGR+LD   +GK+ ++ ++ L++DEADRMLDMGF P I+ + +
Sbjct: 410 GYQARELEKGAHVVVGTPGRLLDFIGKGKINLSKVKYLILDEADRMLDMGFEPEIRKLVT 469

Query: 173 LVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
                    RQTL+FSAT   E+Q++++ FL     + V         I    V    +Y
Sbjct: 470 TFDMPEKGQRQTLMFSATFAAEIQQLAKEFLSEYVFVTVGRVGGANSDITQ-EVHQVTKY 528

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            K+  L++ L  +Q      ++F   K++   L   L ++ +   +IHG+  QR R + L
Sbjct: 529 EKREKLVEIL--NQAGTDRTLVFLETKRSADFLAAYLSQEQYPATSIHGDRLQREREEAL 586

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +FK G   +++A+ +AARGLDIP V HV N+D+P+  + Y+HRIGRTGR G  GKA + 
Sbjct: 587 LDFKTGRAPILIATSVAARGLDIPGVKHVINYDLPSGIDEYVHRIGRTGRCGNLGKATSF 646

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP-LEKI 385
               D+     + + + K +    GD   + PP LE+I
Sbjct: 647 F-DPDVNQDKELARSLVKTL----GDAQQVVPPWLEEI 679


>gi|71418343|ref|XP_810822.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70875414|gb|EAN88971.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 395

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 210/377 (55%), Gaps = 12/377 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   GY KPT IQ + I    Q  D+   A +G+GKT++F + +L +
Sbjct: 25  FEAMGLKEELLRGMYGYGYKKPTAIQKRFIVPFTQSRDLVAQASSGSGKTSAFCICLLQV 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +     +R  + L+L PTRELA Q  D     G +  L     IGG   E   ++LE G
Sbjct: 85  CQSA---LRETQGLVLSPTRELALQTQDLCNNIGHHMGLAAYASIGGKSVEDDIRRLESG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L +N+++ LV+DEAD ML  GF   I +I  ++P   Q +L
Sbjct: 142 VQIVSGTPGRVFDMIKRRHLRVNHLKTLVLDEADEMLGKGFKAQIHDIYRMIP-PLQVVL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++ +++E F+  P RI V     T ++I   FVA   +   +   C L   L 
Sbjct: 201 VSATLPVDVLEMTEKFMTEPVRILVRRDEITVDSIMQYFVAVDEEKNKFETLCDLYDTL- 259

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+ + +IFCN +K V  L   + K+ FSV  +HG++ Q  R +I+ NF+EG  +++
Sbjct: 260 ----TIAHAVIFCNTRKKVEQLAKKMRKEKFSVSCMHGDMPQAERDEIMRNFREGKSRVL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++DL +RG+D+  V  V N+D+P   E YIHRIGRTGR GR G A + V  ++++ +  
Sbjct: 316 ISTDLWSRGIDVEQVSLVLNYDLPFSREQYIHRIGRTGRMGRKGLAISFVKHDELRLLRD 375

Query: 360 IEKLIEKKVDWLNGDLS 376
           +E+    +++ L  +++
Sbjct: 376 VEQFYATQIEELPANIA 392


>gi|310767698|gb|ADP12648.1| ATP-dependent RNA helicase DbpA [Erwinia sp. Ejp617]
          Length = 459

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 136/361 (37%), Positives = 208/361 (57%), Gaps = 10/361 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY+  TP+Q +++P +L   DV   A+TG+GKTA+F    L ++ +  A   + + L+L 
Sbjct: 22  GYLAMTPVQAESLPAILAGRDVRAQAKTGSGKTAAF---GLGVMHRVDASQYVTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QV     +  +   N+ +  L GG P  AQ   L     +++ TPGRILDH  
Sbjct: 79  PTRELADQVTKELRRLARFTSNIKILTLCGGQPVGAQRDSLLHAPHIVVGTPGRILDHLK 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           R  L +  I  LV+DEADRML+MGF   I  I S  P  RQTLLFSAT    + ++S++ 
Sbjct: 139 RETLKLGAINTLVLDEADRMLEMGFREDIDTIISHSPQARQTLLFSATWPQAIAQISQSI 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            ++P  IE    S     IE  F    A+  K  AL+  L + Q +  + ++FCN K+  
Sbjct: 199 QRDPLTIETGDVSDL-PAIEQTFYEAGAR-EKLTALIGLLSERQPS--SCVVFCNTKREC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             + ++L+K   S   +HG+++QR R ++L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 DEIAYALDKAQISAQPLHGDLEQRERDQMLIRFANGSCRVLVATDVAARGLDIKALALVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           N+ +    E ++HRIGRT RAG+ G A + VA +++    A+E  +++K+ W N  LS+L
Sbjct: 315 NYQLSFDPEVHVHRIGRTARAGQEGCAVSFVAPDEMIRAHALEDYLQQKLVWCN--LSAL 372

Query: 379 N 379
            
Sbjct: 373 K 373


>gi|312077794|ref|XP_003141459.1| RNA helicase [Loa loa]
 gi|307763377|gb|EFO22611.1| RNA helicase [Loa loa]
          Length = 674

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 128/367 (34%), Positives = 199/367 (54%), Gaps = 33/367 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + GL  +V   ++  GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 301 NWDEAGLPSEVFDVIMKIGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 360

Query: 62  ILEK------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +           +   P  +I+ PTRELA Q+ +   K+G+   +    +IGG   E Q
Sbjct: 361 WITSIPKFHGNDEQDTGPYAIIMAPTRELAQQIEEETVKFGQLLGIRTVSVIGGASREEQ 420

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL  G +V+I TPGR+LD      L ++    +++DEADRMLDMGF P +Q +   +P
Sbjct: 421 GLKLRLGVEVVIATPGRLLDVLENRYLSLDQCTYVILDEADRMLDMGFEPEVQKVLEYIP 480

Query: 176 FT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
            T                         RQT++F+ATM+  +++++  +L+ P  + + + 
Sbjct: 481 VTNLKPDTEDAEKEESIMENFFSKKKYRQTVMFTATMSPAIERLARAYLRRPAVVYIGSV 540

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               E +E   V    + SK+  L+ +L+ S       IIF NQK+    L   L K GF
Sbjct: 541 GRPTERVEQI-VYMIGEESKRKKLV-ELISSDAFEPPIIIFVNQKRGADMLAKGLTKLGF 598

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
             C +HG   Q +R   L+  K+GT  ++VA+D+A RG+DI DV  V N+D+    E+Y 
Sbjct: 599 QPCVLHGGKGQDAREYSLAALKDGTKDILVATDVAGRGIDIKDVSLVLNYDMAKSIEDYT 658

Query: 331 HRIGRTG 337
           HRIGRTG
Sbjct: 659 HRIGRTG 665


>gi|289624121|ref|ZP_06457075.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289647605|ref|ZP_06478948.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|320321939|gb|EFW78035.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320330955|gb|EFW86929.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330865833|gb|EGH00542.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330872189|gb|EGH06338.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 459

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 134/377 (35%), Positives = 220/377 (58%), Gaps = 8/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++  N+ V  L GG+ F  Q   LE 
Sbjct: 66  INP---RFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F+++P+ ++V    + ++ IE  F     +   + A+++ L   
Sbjct: 183 LFSATYPVGIKQLSSKFMRDPQTVKVEALHADSQ-IEQIFYEISPEQRLE-AVVKVLGHF 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 241 RPA--SCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 299 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 358

Query: 362 KLIEKKVDWLNGDLSSL 378
           +L +  ++W   D  S+
Sbjct: 359 ELQKAPLNWQQYDQLSI 375


>gi|197692465|dbj|BAG70196.1| ATP-dependent RNA helicase DDX5 [Homo sapiens]
          Length = 614

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 209/386 (54%), Gaps = 13/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 154 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 209

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 270 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 329

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 330 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 388

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 389 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           +IK +  +  ++ +    +N  L  L
Sbjct: 449 NIKQVSDLISVLREASQAINPKLLQL 474


>gi|68074371|ref|XP_679100.1| snrnp protein [Plasmodium berghei strain ANKA]
 gi|56499760|emb|CAH95922.1| snrnp protein, putative [Plasmodium berghei]
          Length = 782

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 136/384 (35%), Positives = 206/384 (53%), Gaps = 34/384 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  LS  ++ A+  A Y KPTPIQ++ IP+ L+  D+ GIA+TG+GKTA+FVLPML+ 
Sbjct: 360 WEESNLSSDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSY 419

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +++            P  LI+ P+RELA Q+ +   K+    +     ++GG   EAQ  
Sbjct: 420 VKQLPPLTYETSQDGPYALIIAPSRELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQAF 479

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG +++I TPGR+ D   +   ++N    ++IDEADRM+DMGF   +  I   +P +
Sbjct: 480 ELRRGVEIVIGTPGRLQDCLEKAYTVLNQCNYVIIDEADRMMDMGFEDAVHFILDNIPTS 539

Query: 178 ------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
                                   R T +FSATM   ++++S  +L+ P  I +  P + 
Sbjct: 540 NLKSEDDALALQEEMMAKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGAG 599

Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
             +IE      +    KK   LQ+LL+  +     I+F NQKK    +  S+ K  F   
Sbjct: 600 KRSIEQKL--EFITEGKKKQKLQELLEIYEPP--IIVFVNQKKVADIIAKSISKMKFKAI 655

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
           A+HG   Q  R + L+ FK G   ++VA+D+A RG+D+  V  V NFD+P    +Y HRI
Sbjct: 656 ALHGGKVQEMREEALNAFKNGEFDILVATDVAGRGIDVHGVKLVINFDLPKDIASYTHRI 715

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHI 357
           GRTGRAG  G A + V ++D  HI
Sbjct: 716 GRTGRAGMKGLAISFVTEQDT-HI 738


>gi|154282923|ref|XP_001542257.1| 2-isopropylmalate synthase [Ajellomyces capsulatus NAm1]
 gi|150410437|gb|EDN05825.1| 2-isopropylmalate synthase [Ajellomyces capsulatus NAm1]
          Length = 1466

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 135/361 (37%), Positives = 195/361 (54%), Gaps = 1/361 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L  
Sbjct: 307 FQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILER 366

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++ 
Sbjct: 367 LLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKR 426

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 427 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTM 486

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT+ + K+    L  P R+ V+    T  T+   FV       +K      +L  
Sbjct: 487 LFSATMTNNVDKLIRVGLSRPVRLMVDAKKQTVGTLIQEFVRLRPGREEKRLGYLIVLCK 546

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   KK    +       G  V  +HG++ Q  R+K + +F++G +  ++A
Sbjct: 547 NIYKDRVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRIKSVESFRDGKVSFLLA 606

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V  V N++ P     Y+HR+GRT RAGR G+A TL A+ D K + A  
Sbjct: 607 TDVASRGLDIKGVETVINYEAPQSHAIYLHRVGRTARAGRSGRACTLAAEPDRKVVKAAV 666

Query: 362 K 362
           K
Sbjct: 667 K 667


>gi|189238701|ref|XP_968537.2| PREDICTED: similar to Rs1 CG2173-PA [Tribolium castaneum]
          Length = 1657

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 136/363 (37%), Positives = 206/363 (56%), Gaps = 3/363 (0%)

Query: 3    FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
            F  + LS  ++ A+ D  +V PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP L  
Sbjct: 1105 FYQMNLSRPLLKAISDMKFVHPTPIQASTIPVALMGRDICGCAATGTGKTAAYMLPTLER 1164

Query: 62   ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +L +      + R L+L PTREL  QV    ++  +  ++ + L +GG+  +AQ   L +
Sbjct: 1165 LLYRPVGGPPVTRVLVLVPTRELGVQVYQVTKQLAQFSDIQIGLAVGGLDLKAQETILRK 1224

Query: 122  GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D++I TPGR++DH        +++IE+L++DEADRMLD  F   ++ I      TRQT
Sbjct: 1225 NPDIVIATPGRLIDHLKSTPTFGLDSIEVLILDEADRMLDEYFAEQMKEIIKQCARTRQT 1284

Query: 181  LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +LFSATMT+E++ ++   L  P R+ V++    A  +   FV            +   L 
Sbjct: 1285 MLFSATMTEEVESLAAVSLNKPVRLFVDSNREVAFGLRQEFVRIRQDKEGDREAILAALV 1344

Query: 241  SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +   ++ ++F   KK    L   L   G  V  +HGN+ Q  R+  L  FKE  I ++V
Sbjct: 1345 CRTFREHCMVFVQTKKQAHRLHILLGLLGLKVGELHGNLTQPQRLDALQKFKETQIDVLV 1404

Query: 301  ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI-DA 359
            A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K + D 
Sbjct: 1405 ATDVAARGLDIQGVQTVINFVMPATVEHYIHRVGRTARAGRAGVSVSLAGEQERKIVKDV 1464

Query: 360  IEK 362
            ++K
Sbjct: 1465 VKK 1467


>gi|189205174|ref|XP_001938922.1| ATP-dependent RNA helicase dbp2 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187986021|gb|EDU51509.1| ATP-dependent RNA helicase dbp2 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 573

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 135/395 (34%), Positives = 207/395 (52%), Gaps = 34/395 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ KPT IQ +  P+ L   DV G+A+TG+GKT ++ LP +  
Sbjct: 131 FDEAGFPSYVMNEVKAQGFAKPTAIQAQGWPMALSGRDVVGVAETGSGKTLTYCLPAIVH 190

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 191 INAQPLLAPGDG----PIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQI 246

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 247 RDLARGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 306

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT ++SAT   E+++++ ++ ++  ++ + +   +A       V    ++ K+  + +
Sbjct: 307 DRQTCMWSATWPKEVRQLAADYQKDWIQVNIGSMDLSANHRIQQIVEVCTEFEKRDRMAK 366

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L        N I IF   K+    +   L + G+   +IHG+  Q  R  +L+ FK G 
Sbjct: 367 HLETIMSDKDNKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 426

Query: 296 IQLMVASDLAARGL----------------------DIPDVGHVFNFDVPNRAENYIHRI 333
             +MVA+D+A+RG+                      D+ ++ HVFN+D PN +E+Y+HRI
Sbjct: 427 SPIMVATDVASRGIASRDPIMIAVCSFHQSLTFALQDVRNITHVFNYDYPNNSEDYVHRI 486

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHI-DAIEKLIEKK 367
           GRTGRAG +G A TL   E+ K   D ++ L E K
Sbjct: 487 GRTGRAGANGTAITLFTTENSKQARDLVQILTESK 521


>gi|256077046|ref|XP_002574819.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238660034|emb|CAZ31052.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 637

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 140/380 (36%), Positives = 212/380 (55%), Gaps = 18/380 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +L L   V   V  A Y +PTP+Q   IP++    D+   AQTG+GKTA+F++P+L  
Sbjct: 175 FTELSLHKIVRDNVELANYERPTPVQKHAIPIIASGRDLMACAQTGSGKTAAFLIPILNN 234

Query: 62  ILEKGRA-----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           ++++G             R + P  LIL PTRELA+Q+ D+  K+     +   +L GG 
Sbjct: 235 MIKQGPGDSISATINNNRRKQFPVALILAPTRELASQIFDDARKFSYRSLIRPCVLYGGA 294

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q  +L  G ++L+ TPGR+ D   RG++ ++    LV+DEADRMLDMGF P I+ I
Sbjct: 295 DMRTQLMELSEGCNLLVATPGRLSDVLERGRVGLDYCRFLVLDEADRMLDMGFEPQIRRI 354

Query: 171 T---SLVPF-TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
               +L P   RQTL+FSAT  +E+Q ++++FL N   + V    ST+E I    +  + 
Sbjct: 355 VEQDALPPSGERQTLMFSATFPNEIQILAKDFLNNYIFLTVGRVGSTSENITQTIL--WV 412

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           + + K   L  LL   +     ++F   ++    L + L  Q F V +IHG+  Q  R  
Sbjct: 413 EENAKRDTLIDLLAHSEAGTLILVFVETRRGADALENYLYSQKFQVASIHGDRTQEDREL 472

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            LS F+ G   ++VA+ +AARGLDIP+V HV N+D+P+  E Y+HRIGRTGR G  G A 
Sbjct: 473 ALSCFRSGRTPVLVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRVGNLGLAT 532

Query: 347 TLVAKEDIKHIDAIEKLIEK 366
           +    ++      + +L+E+
Sbjct: 533 SFFNDKNRNLARGLVELLEE 552


>gi|312374635|gb|EFR22148.1| hypothetical protein AND_15703 [Anopheles darlingi]
          Length = 715

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 207/370 (55%), Gaps = 17/370 (4%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE- 64
            G  P ++  +   G+ KP+PIQ +  P++L   D+ GIAQTGTGKT +F+LP    +E 
Sbjct: 295 FGNYPDLMEELRKQGFTKPSPIQSQGWPVLLLGEDMIGIAQTGTGKTLAFLLPAFIHIEG 354

Query: 65  --KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               R+    P  L+L PTRELA Q+     KY +  ++    L GG    AQ   +  G
Sbjct: 355 QSTPRSERGGPNVLVLAPTRELALQIEKEVSKY-QFRDIKAVCLYGGGDRRAQMNVVRSG 413

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +++I TPGR+ D    G + +++I  LV+DEADRMLDMGF P I+ +   +   RQT++
Sbjct: 414 VEIIIATPGRLNDLVQEGVVNVSSITYLVLDEADRMLDMGFEPQIRKVLLDIRPDRQTVM 473

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY------SKKCALLQ 236
            SAT  D +++++++++ +P ++ V T       ++   V T  Q+        K   + 
Sbjct: 474 TSATWPDGVRRLAQSYMHDPIQVYVGT-------LDLAAVHTVTQHIECLDEEDKYHRIM 526

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + ++  +     IIFC +K    +L            +IHGN +Q  R + L + K+GT+
Sbjct: 527 KFVKQMEPKDKVIIFCGKKTRADDLSSEFVLNDIGCQSIHGNREQADREQALEDIKKGTV 586

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++A+D+A+RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + + V + D   
Sbjct: 587 RILIATDVASRGLDIEDITHVVNYDFPRNIEEYVHRVGRTGRAGRTGTSLSFVTRSDWAV 646

Query: 357 IDAIEKLIEK 366
              + K++E+
Sbjct: 647 AAELIKILEE 656


>gi|190149870|ref|YP_001968395.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307249764|ref|ZP_07531742.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307263195|ref|ZP_07544815.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915001|gb|ACE61253.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306858179|gb|EFM90257.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306871412|gb|EFN03136.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 406

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 139/387 (35%), Positives = 221/387 (57%), Gaps = 12/387 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   V+ A+   G+   TPIQ KT+P+ L   D+ G AQTGTGKT +F++     
Sbjct: 10  FIDFPIHENVLAALDSKGFEFCTPIQAKTLPITLAGQDIAGQAQTGTGKTLAFLIATFHY 69

Query: 63  LEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L    +      PR +IL PTRELA Q+  + E   K+ +L +AL  GG  ++ Q + +E
Sbjct: 70  LLTNDSETNKNQPRAIILAPTRELAVQIGSDAELLVKHSDLKLALAYGGDGYDKQVQAIE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ- 179
           +G D+L+ T GR++D+  +G + ++ ++++V+DEADRM D+GFI  I+ +    P   Q 
Sbjct: 130 QGVDILVGTTGRVIDYVKQGIINLDKVQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEQR 189

Query: 180 -TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237
            T+LFSAT++  +++++   + N + IE+     T   I E  F   Y     K ALL  
Sbjct: 190 LTMLFSATLSPRVRELAYEDMDNAQYIEIEPLQRTGHRIKEELF---YPSNEDKMALLLT 246

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +      +IF N K     + + L   G  V  + G+I Q+ R+ +L +F +G + 
Sbjct: 247 LLEEE-WPDRCMIFANTKHKCEEIWNYLVADGHRVGLLTGDIAQKKRLALLDSFTKGQLD 305

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP+V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +    ++
Sbjct: 306 ILVATDVAARGLHIPEVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISFACERYAVNL 365

Query: 358 DAIEKLIEKKV---DWLNGDLSSLNPP 381
            AIE  I   +    + +G L +L  P
Sbjct: 366 PAIEAYIGHHIPVSQYDSGALLTLPKP 392


>gi|238755823|ref|ZP_04617154.1| ATP-independent RNA helicase dbpA [Yersinia ruckeri ATCC 29473]
 gi|238705981|gb|EEP98367.1| ATP-independent RNA helicase dbpA [Yersinia ruckeri ATCC 29473]
          Length = 434

 Score =  233 bits (594), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 130/347 (37%), Positives = 204/347 (58%), Gaps = 8/347 (2%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84
           TP+Q   +P +L+  DV   A+TG+GKTA+F + +L  +  G     + + L+L PTREL
Sbjct: 2   TPVQAAALPAILKGQDVRAKAKTGSGKTAAFGIGLLDKIAVGEF---VTQALVLCPTREL 58

Query: 85  AAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           A QV+    +  +   N+ +  L GG P   Q   L     +++ TPGRI +H  +  L+
Sbjct: 59  ADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHAPHIVVGTPGRIQEHLRKRTLV 118

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           ++++++LV+DEADRMLDMGF   I ++ S  P  RQTLLFSAT    ++++S    + P 
Sbjct: 119 LDDLKVLVLDEADRMLDMGFTDAINDVISYTPPQRQTLLFSATYPAGIERISAKVQREPL 178

Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
            +EV +       I+  F  T  +  K+  LL  +L S     + ++FCN KK+  ++  
Sbjct: 179 NVEVESEGEDP-AIQQVFFETTRE--KRLPLLISVL-SHYQPASCVVFCNTKKDCQSVYD 234

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
           +LE +G SV A+HG+++QR R ++L  F   + +++VA+D+AARGLDI D+  V NF++ 
Sbjct: 235 TLESRGISVLALHGDLEQRDRDQVLVRFSNRSCRVLVATDVAARGLDIKDLELVVNFELA 294

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
              E ++HRIGRTGRAG  G A +L    ++    AIE  ++ KV W
Sbjct: 295 FDPEVHVHRIGRTGRAGMSGLAVSLCTPSEMGRAHAIEDYLQIKVKW 341


>gi|171911382|ref|ZP_02926852.1| DNA/RNA helicase, ATP-dependent, DEAD-box family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 314

 Score =  233 bits (594), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 115/281 (40%), Positives = 183/281 (65%), Gaps = 4/281 (1%)

Query: 90  DNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEI 149
           + F+K+ ++  L   L+ GG+ +  Q + L+RG D+++ TPGR+LD  + G + + +IE+
Sbjct: 2   EAFDKFNRHTGLRTLLVHGGVGYGKQREGLQRGVDIVVATPGRLLDFMSDGTVNLADIEV 61

Query: 150 LVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT 209
           L++DE DRMLDMGF+P ++ I S  P +RQTL FSATM  +++ ++E  L+ P+ IEV  
Sbjct: 62  LILDEVDRMLDMGFLPDVRRIVSETPKSRQTLFFSATMPPQIKGLAEWALREPESIEVGL 121

Query: 210 PSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269
             S AET+ H      +   ++  LL  LLQS +   + +IF   K +   L  ++++ G
Sbjct: 122 RFSPAETVSHYMYPVAS--DQREELLLALLQSTE-FHSVMIFTRMKVHADRLFAAIQQTG 178

Query: 270 -FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
            + V  +H +I+QR R K L  F++G   ++VA+DLAARGLD+  V HV N+ VP   E+
Sbjct: 179 KYKVAVMHSDINQRDREKALQGFRDGAFDIIVATDLAARGLDVSGVTHVINYMVPENPED 238

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           Y+HRIGRTGRA + G AFTL A ++I ++ +IE+LI++K++
Sbjct: 239 YVHRIGRTGRAQKEGDAFTLFAADEISYVHSIERLIDQKIE 279


>gi|325675810|ref|ZP_08155494.1| ATP-dependent RNA helicase RhlE [Rhodococcus equi ATCC 33707]
 gi|325553781|gb|EGD23459.1| ATP-dependent RNA helicase RhlE [Rhodococcus equi ATCC 33707]
          Length = 500

 Score =  233 bits (594), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 194/366 (53%), Gaps = 4/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+   +V A+ D G   P PIQ+ T+P  L   DV G  +TG+GKT +F +P+   
Sbjct: 27  FESLGVPAPIVSALADGGITAPFPIQVDTLPDTLAGRDVLGRGKTGSGKTLAFSIPLAAR 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G+ R   PR L+L PTRELA Q+    E       L V  + GG+    Q K LE G
Sbjct: 87  LAGGKRRPGKPRGLVLAPTRELATQITATLEPLAGALGLRVTTIFGGVSQHRQVKALESG 146

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++  PGR+ D   +  + ++ +E+ ++DEAD M D+GF+P +  I +  P   Q LL
Sbjct: 147 VDIVVACPGRLEDLMKQRFVTLDAVEMTILDEADHMADLGFLPGVTRILTATPSGGQRLL 206

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ + + K+ + FLQN     V+  +S    + H  V   A    K AL+ +L   Q
Sbjct: 207 FSATLDNGVDKLVKRFLQNEVLHSVDEANSPVAAMTH-HVYDVAGVEAKKALVHKLASGQ 265

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F   K     L   L + G     +HGN+ Q +R + L+ F EGT +++VA+
Sbjct: 266 GRR---ILFMRTKHQARKLARQLTESGIPSVDLHGNLSQNARDRNLAAFSEGTARVLVAT 322

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+ + +V  V + D P   + Y+HR GRT RAG  G   T+V  E  K + A+ +
Sbjct: 323 DVAARGVHVDEVELVVHVDPPAEHKAYLHRSGRTARAGSAGDVVTIVLPEQRKDLSALMR 382

Query: 363 LIEKKV 368
               KV
Sbjct: 383 KASIKV 388


>gi|167035990|ref|YP_001671221.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida GB-1]
 gi|166862478|gb|ABZ00886.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 461

 Score =  233 bits (594), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 219/370 (59%), Gaps = 10/370 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA L LS  ++ A LDA GY   TPIQ +++P++L+  D+   A+TG+GKTA+F + +L 
Sbjct: 8   FATLPLSTAML-ANLDALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            +     R    + L+L PTRELA QVA    +  +   N+ +  L GG+    Q   LE
Sbjct: 67  PINP---RYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLE 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRI  H ++G L+++ +  LV+DEADRMLDMGF   I +I    P  RQT
Sbjct: 124 HGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPARRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++++ +F++NP++++V +   T   IE  F+    Q+  + A+ + L  
Sbjct: 184 LLFSATYPAGIKQLAADFMRNPQQVKVES-LHTDNQIEQRFIEIDPQHRLE-AVTRVLGH 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   ++ + FC  K+   ++   L  +G    A+HG+++QR R ++L+ F   +  ++V
Sbjct: 242 YRP--QSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N ++   AE ++HR+GRTGRAG  G A +LVA  +     AI
Sbjct: 300 ATDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGIAVSLVAPAEGHRAQAI 359

Query: 361 EKLIEKKVDW 370
           E L +  + W
Sbjct: 360 EDLQKSPLRW 369


>gi|91077478|ref|XP_968425.1| PREDICTED: similar to CG5800 CG5800-PA [Tribolium castaneum]
 gi|270002829|gb|EEZ99276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Tribolium castaneum]
          Length = 770

 Score =  233 bits (594), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 163/458 (35%), Positives = 252/458 (55%), Gaps = 39/458 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL LSPK +  + + GY KPT IQ +TI L L   D+ G AQTG+GKT +F++P+L  
Sbjct: 53  FDDLPLSPKTLKGLKECGYTKPTDIQRETIKLGLTGKDILGAAQTGSGKTLAFLIPILER 112

Query: 63  LE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  K   R+     L++ PTRELA Q+ +   + G+++  +  L+IGG   + +  ++++
Sbjct: 113 LYCKQWTRLDGLGALVITPTRELAYQIFEELRRVGEHHEFSAGLIIGGKDLKFERNRMDQ 172

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             +++I TPGRIL H +   L    N+EILV+DEADR LDMGF   +  I + +P  RQT
Sbjct: 173 -CNIVIGTPGRILQHMDENPLFDCVNMEILVLDEADRCLDMGFEQTMNAIVANLPAKRQT 231

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT T  ++ ++   L+NP  + V+  S  ST + ++  +V    +   K ++L   
Sbjct: 232 LLFSATQTKSVRDLARLSLKNPAYVSVHEHSEYSTPKGLQQSYVV--CELKDKVSILWSF 289

Query: 239 LQSQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +++    K+ IIF   C + K V  +   L + G S+ A++G + Q  RM I  NF + T
Sbjct: 290 IKNHLKQKS-IIFLASCKEVKYVYEIFCRL-RPGVSLMALYGTLHQLRRMDIYENFCKKT 347

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++ A+D+AARGLD P+V  V   D P  A  YIHR+GRT R  R G++  L+   ++K
Sbjct: 348 SAVLFATDIAARGLDFPEVHWVVQADCPEDAATYIHRVGRTARFFRGGESLLLLLPSELK 407

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF--------D 407
            +D    L EKK+            P+EKIDI   N  + NNP+ +K   F        D
Sbjct: 408 MLD---NLKEKKI------------PIEKIDI---NPLKLNNPV-RKMEAFLARDPDLKD 448

Query: 408 RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGF 445
             ++ + S    + L + +K+  +Q    ++ A SLG 
Sbjct: 449 TAQRAFVSYAKSVFLMKDKKVFNVQALDTDSFAHSLGL 486


>gi|170038849|ref|XP_001847260.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167862451|gb|EDS25834.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 709

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 125/362 (34%), Positives = 208/362 (57%), Gaps = 5/362 (1%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG- 66
           + P+++  +  AG+VKP+PIQ +  P++L+  D+ GIAQTGTGKT +F+LP    ++   
Sbjct: 299 VWPELLEEIRKAGFVKPSPIQAQAWPVLLKGEDMIGIAQTGTGKTLAFLLPAFIHIDGQP 358

Query: 67  --RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
             R +   P  L++ PTRELA Q+    +KY +   +    L GG     Q KK+  G +
Sbjct: 359 VPRGQRGGPNVLVMAPTRELALQIEKEVQKY-QFKGIKAICLYGGGDRRQQIKKVGEGVE 417

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           ++ICTPGR+ D  +   + + +I  LV+DEADRMLDMGF P I+ +   +   RQT++ S
Sbjct: 418 IIICTPGRLNDLVSANVIDITSITYLVLDEADRMLDMGFEPQIRKLLLDIRPDRQTIMTS 477

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT    ++++++++++NP ++ V T    A       +    +  K   ++   +++   
Sbjct: 478 ATWPPGVRRLAQSYMKNPVQVYVGTLDLAATHTVTQQIEVIDEEDKYVRVMG-FVKNMGK 536

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
               IIFC +K    +L       G +  +IHG+ DQ  R + L + K G +++++A+D+
Sbjct: 537 NDKAIIFCGRKTRADDLSSEFVLSGINCQSIHGDRDQADREQALEDIKSGDVRVLIATDV 596

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           A+RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + +   + D      + K++
Sbjct: 597 ASRGLDIEDITHVVNYDFPRNIEEYVHRVGRTGRAGRTGISLSFFTRSDWAIAAELIKIL 656

Query: 365 EK 366
           E+
Sbjct: 657 EE 658


>gi|164658197|ref|XP_001730224.1| hypothetical protein MGL_2606 [Malassezia globosa CBS 7966]
 gi|159104119|gb|EDP43010.1| hypothetical protein MGL_2606 [Malassezia globosa CBS 7966]
          Length = 653

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 136/365 (37%), Positives = 203/365 (55%), Gaps = 20/365 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-------------EK 65
           A Y  PTP+Q  +IP+V    D+ G AQTG+GKT  F+ P+L+ L               
Sbjct: 200 ARYSTPTPVQKYSIPIVGAGRDLMGCAQTGSGKTGGFLFPILSALFTHGPPPMPPQPPMY 259

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
           GR +   P  LIL PTREL +Q+ +   K+     +  A++ GG    AQ +++ERG D+
Sbjct: 260 GRQKA-FPSVLILAPTRELVSQIHEEARKFTYRSWVRPAVVYGGAEMGAQLRQIERGCDM 318

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT--SLVP--FTRQTL 181
           L  TPGR++D   RG++ + N+  LV+DEADRMLDMGF P I+ I     +P    RQTL
Sbjct: 319 LSATPGRLVDLIERGRISLANVRFLVLDEADRMLDMGFEPQIRRIVLGEDMPGVMDRQTL 378

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +Q ++++FL+    + V    ST+E I       Y +   K ++L  +L +
Sbjct: 379 MFSATFPQNIQMLAKDFLKEYVFLSVGRVGSTSENITQKI--EYVEDRDKQSMLLDVLAA 436

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    +IF   K+    L   L     +  +IHG+  QR R   L  F+ G   ++VA
Sbjct: 437 MPTSGLTLIFVETKRMADMLSDFLIYSNIAATSIHGDRTQREREYALDLFRSGRTPILVA 496

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           + +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A     + +   +  + 
Sbjct: 497 TAVAARGLDIPNVTHVVNYDLPSDIDDYVHRIGRTGRAGNIGHATAFFNRNNRNIVRDLV 556

Query: 362 KLIEK 366
           KL+++
Sbjct: 557 KLLQE 561


>gi|302917131|ref|XP_003052376.1| hypothetical protein NECHADRAFT_1180 [Nectria haematococca mpVI
           77-13-4]
 gi|256733315|gb|EEU46663.1| hypothetical protein NECHADRAFT_1180 [Nectria haematococca mpVI
           77-13-4]
          Length = 768

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 196/353 (55%), Gaps = 3/353 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  ++  +   G+ KPTPIQ K+IP+ L   D+ G A TG+GKT +F++P+L  
Sbjct: 257 FQAMSLSRPILRGLASVGFTKPTPIQSKSIPIALMGKDLVGGAVTGSGKTGAFIVPILER 316

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     ++   R ++L PTRELA Q      K     ++   L +GG+  + Q  +L   
Sbjct: 317 LLYRPKKIPTTRVVVLTPTRELAIQCHAVATKLAAYTDIKFTLAVGGLSLKVQEAELRLR 376

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EIL++DEADRML+ GF   +  I + +P +RQT+
Sbjct: 377 PDVIIATPGRFIDHMRNSASFNVDTVEILILDEADRMLEDGFADELNEILTTLPKSRQTM 436

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMT  + ++    +  P R+ V++   T  T+   FV     +  K+   L  + +
Sbjct: 437 LFSATMTSTVDRLIRVGMNKPARVMVDSQKKTVGTLVQEFVRLRPGREEKRMGYLAYICK 496

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +    +  IIF  QKK            G S   +HG+++Q  R+  +  F++G +  ++
Sbjct: 497 TL-YRERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQTQRISSVEEFRDGKVSYLL 555

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G A TL A+ D
Sbjct: 556 ATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRKGTAITLAAEPD 608


>gi|254578362|ref|XP_002495167.1| ZYRO0B04972p [Zygosaccharomyces rouxii]
 gi|238938057|emb|CAR26234.1| ZYRO0B04972p [Zygosaccharomyces rouxii]
          Length = 979

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 137/422 (32%), Positives = 226/422 (53%), Gaps = 59/422 (13%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G S  ++  +   G+ +PTPIQ KTIPL+LQ  D+ G+A+TG+GKTA+FVLPM+  
Sbjct: 125 FPSFGFSKFILNNINKKGFRQPTPIQRKTIPLILQNRDIVGMARTGSGKTAAFVLPMIEK 184

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   +++   R +IL P+RE+A Q    F+++ K  +L   LL GG   E Q   +   
Sbjct: 185 LKAHSSKIG-ARAVILSPSREIAMQTYKVFKEFSKGSDLRSVLLTGGDSLEDQFGMMMSN 243

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR L       L + ++E  V DEADR+ +MGF   +  + + +P  RQTLL
Sbjct: 244 PDVVVATPGRFLHLKVEMNLNLKSVEYAVFDEADRLFEMGFAEQLNELLASLPEKRQTLL 303

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ-- 240
           FSAT+ + L   ++  L NP  + ++  S  +E +E  FV+T  ++ ++ A L  LLQ  
Sbjct: 304 FSATLPNTLVDFAKAGLTNPVLVRLDAESKISENLEMLFVST--KHDEREANLFYLLQEV 361

Query: 241 -----------------------SQDT-MKNG---------------------------- 248
                                  S+D+  +NG                            
Sbjct: 362 IKIPLATEEQKMILGEGNKALSDSEDSDAENGKKDRRKKGKKNKAKRPKLPSANELPSEK 421

Query: 249 --IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+F   + +V  +   L+  G+ V  I+G +DQ +R + L NF+ G   ++V +D+AA
Sbjct: 422 ATIVFVPTRHHVEYISQLLKACGYLVSYIYGTLDQHARRRQLYNFRAGLTSILVVTDVAA 481

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RG+DIP + +V NF +P+ ++ ++HR+GRT RAG  G A+++V++ ++ ++  +E  + K
Sbjct: 482 RGVDIPMLANVINFTMPSSSKIFVHRVGRTARAGNRGWAYSIVSESELPYLLDLELFLGK 541

Query: 367 KV 368
           K+
Sbjct: 542 KI 543


>gi|73965233|ref|XP_861802.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 12 [Canis
           familiaris]
          Length = 486

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 14/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 154 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 209

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 270 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 329

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 330 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 388

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 389 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448

Query: 353 DIKHI-DAIEKLIE 365
           +IK + D I  L E
Sbjct: 449 NIKQVSDLISVLRE 462


>gi|115397801|ref|XP_001214492.1| hypothetical protein ATEG_05314 [Aspergillus terreus NIH2624]
 gi|121738078|sp|Q0CLX0|PRP28_ASPTN RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|114192683|gb|EAU34383.1| hypothetical protein ATEG_05314 [Aspergillus terreus NIH2624]
          Length = 783

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 135/440 (30%), Positives = 227/440 (51%), Gaps = 43/440 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A+ GL  +++  V   GY  PTPIQ   IP+ +Q  D+ G+A TG+GKTA+F+LP+L  
Sbjct: 345 WAESGLPSRLLDLVHRVGYKDPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLVY 404

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +       E    +   P  ++L PTRELA Q+    +K+      TV  ++GG   E Q
Sbjct: 405 IAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTIPLGFTVVSIVGGHSLEEQ 464

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +P
Sbjct: 465 AYSLRNGAEIIIATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALP 524

Query: 176 FT-----------------------------RQTLLFSATMTDELQKVSENFLQNPKRIE 206
            +                             RQT++++ATM   +++++  +L+ P  + 
Sbjct: 525 VSNEKPDSDAAENAAAMSQLHHAGGGRDTRYRQTMMYTATMPTAVERIARKYLRRPAIVT 584

Query: 207 VNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLE 266
           + +     +T+E   V   A   K+   L  +L S +     I+F N K+N   +   ++
Sbjct: 585 IGSAGEAVDTVEQR-VELIAGEDKRKKRLGDILSSGEFRPPIIVFVNIKRNCDAIAREIK 643

Query: 267 KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
           + GFS   +HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++    
Sbjct: 644 QWGFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATSI 703

Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
           E+Y HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K +
Sbjct: 704 ESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQML------IKSPISRVPDELRKHE 757

Query: 387 IAQHNHARKNNPIPQKSTGF 406
            AQ    R  +    +S+ F
Sbjct: 758 AAQQKPTRGFSKKNDESSAF 777


>gi|307245417|ref|ZP_07527505.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254371|ref|ZP_07536209.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258830|ref|ZP_07540562.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306853758|gb|EFM85975.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862670|gb|EFM94626.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867181|gb|EFM99037.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 412

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 139/387 (35%), Positives = 221/387 (57%), Gaps = 12/387 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   V+ A+   G+   TPIQ KT+P+ L   D+ G AQTGTGKT +F++     
Sbjct: 10  FIDFPIHENVLAALDSKGFEFCTPIQAKTLPITLAGQDIAGQAQTGTGKTLAFLIATFHY 69

Query: 63  LEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L    +      PR +IL PTRELA Q+  + E   K+ +L +AL  GG  ++ Q + +E
Sbjct: 70  LLTNDSETNKNQPRAIILAPTRELAVQIGSDAELLVKHSDLKLALAYGGDGYDKQVQAIE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ- 179
           +G D+L+ T GR++D+  +G + ++ ++++V+DEADRM D+GFI  I+ +    P   Q 
Sbjct: 130 QGVDILVGTTGRVIDYVKQGIINLDKVQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEQR 189

Query: 180 -TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237
            T+LFSAT++  +++++   + N + IE+     T   I E  F   Y     K ALL  
Sbjct: 190 LTMLFSATLSPRVRELAYEDMDNAQYIEIEPLQRTGHRIKEELF---YPSNEDKMALLLT 246

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +      +IF N K     + + L   G  V  + G+I Q+ R+ +L +F +G + 
Sbjct: 247 LLEEE-WPDRCMIFANTKHKCEEIWNYLVADGHRVGLLTGDIAQKKRLALLDSFTKGQLD 305

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP+V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +    ++
Sbjct: 306 ILVATDVAARGLHIPEVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISFACERYAVNL 365

Query: 358 DAIEKLIEKKV---DWLNGDLSSLNPP 381
            AIE  I   +    + +G L +L  P
Sbjct: 366 PAIEAYIGHHIPVSQYDSGALLTLPKP 392


>gi|46143736|ref|ZP_00134588.2| COG0513: Superfamily II DNA and RNA helicases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307256578|ref|ZP_07538359.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864988|gb|EFM96890.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 406

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 139/387 (35%), Positives = 222/387 (57%), Gaps = 12/387 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   V+ A+   G+   TPIQ KT+P+ L   D+ G AQTGTGKT +F++ +   
Sbjct: 10  FIDFPIHENVLAALDSKGFEFCTPIQAKTLPITLAGQDIAGQAQTGTGKTLAFLIAVFHY 69

Query: 63  LEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L    +      PR +IL PTRELA Q+  + E   K+ +L +AL  GG  ++ Q + +E
Sbjct: 70  LLTNDSVTNKNQPRAIILAPTRELAVQIGSDAELLVKHSDLKLALAYGGDGYDKQVQAIE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ- 179
           +G D+L+ T GR++D+  +G + ++ ++++V+DEADRM D+GFI  I+ +    P   Q 
Sbjct: 130 QGVDILVGTTGRVIDYVKQGIINLDKVQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEQR 189

Query: 180 -TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237
            T+LFSAT++  +++++   + N + IE+     T   I E  F   Y     K ALL  
Sbjct: 190 LTMLFSATLSARVRELAYEDMNNAQYIEIEPLQRTGHRIKEELF---YPSNEDKMALLLT 246

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +      +IF N K     + + L   G  V  + G+I Q+ R+ +L +F +G + 
Sbjct: 247 LLEEE-WPDRCMIFANTKHKCEEIWNYLVADGHRVGLLTGDIAQKKRLALLDSFTKGQLD 305

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP+V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +    ++
Sbjct: 306 ILVATDVAARGLHIPEVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISFACERYAVNL 365

Query: 358 DAIEKLIEKKV---DWLNGDLSSLNPP 381
            AIE  I   +    + +G L +L  P
Sbjct: 366 PAIEAYIGHHIPVSQYDSGALLTLPKP 392


>gi|307111894|gb|EFN60128.1| hypothetical protein CHLNCDRAFT_56582 [Chlorella variabilis]
          Length = 863

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 140/419 (33%), Positives = 214/419 (51%), Gaps = 42/419 (10%)

Query: 5   DLGLSPKVV-CAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
           D G  PK +  AV  AGY KP+PIQ+  IPL LQ  DV GIA+TG+GKTA+FVLPML  +
Sbjct: 442 DEGNLPKSLRKAVERAGYKKPSPIQMAAIPLGLQFRDVIGIAETGSGKTAAFVLPMLVYI 501

Query: 64  EK-----GRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           EK     G   +    P +++L PTRELA Q+ +            V  ++GG   E Q 
Sbjct: 502 EKQPPMLGNPDIEAEGPYSVVLAPTRELAQQIEEEARNLAHYTEFRVVSVVGGQSIEDQG 561

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY---IQNITSL 173
             L +G ++++ TPGR++D   R   ++N    +V+DEADRM+D+GF P    +  +   
Sbjct: 562 VALRKGCEIVVATPGRLVDCIERSYAVLNQCNYVVLDEADRMIDLGFEPQASAVMGVLDA 621

Query: 174 VPFT-----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
           +P +                 R T +FSATM   +++++  +L+ P  I + T     + 
Sbjct: 622 MPSSNLKPENEDEPLESNRVYRTTYMFSATMPPAVERLARKYLRRPVVITIGTAGKATDN 681

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
           I    +    + ++K   L+Q L +    +  I+F N K     +   L    + V  +H
Sbjct: 682 ITQRVIMV--KENEKARSLEQELNAMGDDQRIIVFANTKSQCDAVARQLGNMDYRVTMLH 739

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G   Q  R + +  F+E    ++VA+D+A RG+D+P+V  V N+D+ N  E Y HRIGRT
Sbjct: 740 GGKSQDQREESIKGFREDVYNVLVATDVAGRGIDVPNVALVINYDMANTIEQYTHRIGRT 799

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           GRAGR G A T +  +D +    ++K +E+            N       +AQH  AR+
Sbjct: 800 GRAGRKGTAVTFLTLKDSELFYDLKKFLEE------------NKAAVPSQLAQHEAARQ 846


>gi|328704199|ref|XP_001943651.2| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
           [Acyrthosiphon pisum]
          Length = 771

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 132/356 (37%), Positives = 205/356 (57%), Gaps = 4/356 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + +S  ++ A+    YV PTPIQ   IP+ L   D+CG A TGTGKTA+++LP+L  
Sbjct: 167 FYQMNISRPLMKAISALNYVHPTPIQAAAIPVALLGRDICGCAATGTGKTAAYMLPILER 226

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L + +    + R L+L PTREL  QV    ++  +  ++ V L +GG+  + Q   L +
Sbjct: 227 LLYRPKGFTPITRVLVLVPTRELGVQVYQVTKQLAQFTSVEVGLSVGGLELKVQESILRK 286

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR+LDH  N     + ++E+LV+DEADRMLD  F   ++ I ++   TRQT
Sbjct: 287 NPDVVIATPGRLLDHLQNTPSFSLADLEVLVLDEADRMLDENFADQMKEIINMCARTRQT 346

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-TYAQYSKKCALLQQLL 239
           +LFSATMTD +  ++   L  P +I V++ +  A  +   FV     +   + A L  L+
Sbjct: 347 MLFSATMTDAVNDLATVSLSKPVKIFVDSNTDVAFNLRQEFVRLRQGKEQDRDATLAALV 406

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + +IF   K +   +   L   G     +HGN+ Q  R++ L  FK+  + L+
Sbjct: 407 -CRTFRDHTMIFVRTKADAHRVKILLGLFGLKAGELHGNLSQPQRLEALRQFKDEELDLL 465

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +A+D+AARGLDI  V  V N+ +P   E+YIHR+GRT RAGR G + ++ +++D K
Sbjct: 466 IATDVAARGLDIRGVKAVINYTMPPTVEHYIHRVGRTARAGRSGVSVSIASEQDRK 521


>gi|75076425|sp|Q4R6M5|DDX5_MACFA RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5
 gi|67969804|dbj|BAE01250.1| unnamed protein product [Macaca fascicularis]
          Length = 614

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 14/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 154 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 209

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 270 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 329

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 330 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFK 388

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 389 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448

Query: 353 DIKHI-DAIEKLIE 365
           +IK + D I  L E
Sbjct: 449 NIKQVSDLISVLRE 462


>gi|291222373|ref|XP_002731189.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 670

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 130/365 (35%), Positives = 203/365 (55%), Gaps = 19/365 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +      ++  V    + +PT IQ +  P+ L   DV GIAQTG+GKT +++LP +  
Sbjct: 122 FGECSFPDYILATVKRNNFKEPTAIQAQGWPMALTGRDVVGIAQTGSGKTIAYMLPAIVH 181

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L++G      P  L+L PTRELA QVA     +GK+  +    + GG P  +Q 
Sbjct: 182 INHQPFLDRGDG----PICLVLCPTRELAQQVAHVAVDFGKSSRIKNTCVYGGAPKGSQI 237

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + LERG ++ I TPGR+LD    GK  +     LV+DEADRMLDMGF P I+ I   +  
Sbjct: 238 RDLERGVEICIATPGRLLDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 297

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKK 231
            RQ L++SAT   E++ ++E+FL++  ++ +   S +A     + ++ C    + +  K 
Sbjct: 298 DRQVLMWSATWPKEVRGLAEDFLKDYLQVNIGALSLSANHNILQIVDVC--QEHEKDDKL 355

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL++++Q  +     +IF   KK   +L   + + G+    IHG+  Q  R  +LS F
Sbjct: 356 IRLLEEIMQENENKT--LIFVETKKRTDDLTRRMRRDGWPAMCIHGDKSQPERDWVLSEF 413

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G   +++A+D+A+RGLD+ D+  V NFD P+  E+YIHRIGRT R+ R G A+T    
Sbjct: 414 RAGNAPILLATDVASRGLDVTDIKFVINFDYPSSTEDYIHRIGRTARSERTGTAYTFFTA 473

Query: 352 EDIKH 356
            ++K 
Sbjct: 474 GNMKQ 478


>gi|119186507|ref|XP_001243860.1| hypothetical protein CIMG_03301 [Coccidioides immitis RS]
 gi|118595360|sp|Q1E2B2|DRS1_COCIM RecName: Full=ATP-dependent RNA helicase DRS1
          Length = 840

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 136/359 (37%), Positives = 198/359 (55%), Gaps = 3/359 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS  ++  +   G+  PTPIQ K IP+ L   D+ G A TG+GKTA+F++P+L  
Sbjct: 321 FQNFNLSRPILRGLAAVGFSAPTPIQRKAIPVGLLGKDLVGGAVTGSGKTAAFIIPILER 380

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++ 
Sbjct: 381 LLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKQR 440

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 441 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILNTIPKSRQTM 500

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMTD + K+    L  P R+ V++   T  T+   FV     +  K+   L  L  
Sbjct: 501 LFSATMTDSVDKLIRVGLNRPVRLMVDSKKHTVGTLVQEFVRLRPGREGKRMGYLVLLCN 560

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  T +  I+F  QKK            G     +HG++ Q  R+  +  F++G +  ++
Sbjct: 561 TIYTNRV-IVFFRQKKEAHRARIIFGLLGLKAAELHGSMSQEQRINAVEAFRDGKVPFLL 619

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + A
Sbjct: 620 ATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKA 678


>gi|74354729|gb|AAI03319.1| DDX5 protein [Bos taurus]
          Length = 671

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 14/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 151 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 210

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 211 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 266

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 267 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 326

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 327 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 386

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 387 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 445

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 446 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 505

Query: 353 DIKHI-DAIEKLIE 365
           +IK + D I  L E
Sbjct: 506 NIKQVSDLISVLRE 519


>gi|282158103|ref|NP_001164095.1| ATP-dependent RNA helicase p62 [Tribolium castaneum]
          Length = 549

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 124/366 (33%), Positives = 208/366 (56%), Gaps = 9/366 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--EKGRARVRMPRTLI 77
           GY  PT IQ +  P+ +   D+ GIAQTG+GKT +++LP +  +  +   AR   P  L+
Sbjct: 132 GYDTPTAIQAQGWPIAMSGKDLVGIAQTGSGKTLAYILPAIVHINNQPSIARGDGPIALV 191

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           L PTRELA Q+      +G +  +    + GG P   Q + LERG ++ I TPGR++D  
Sbjct: 192 LAPTRELAQQIQQVAHDFGSSSYVRNTCIFGGAPKGPQARDLERGVEICIATPGRLIDFL 251

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
            +G   +     LV+DEADRMLDMGF P I+ I   +   RQTL++SAT   E++K++++
Sbjct: 252 EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVRKLAQD 311

Query: 198 FLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           FL+N  +I + +   +A     + ++ C    + + +K   LLQ++  + +     IIF 
Sbjct: 312 FLRNYVQINIGSLQLSANHNILQIVDVC--QEHEKETKLNNLLQEIGNNGEPGAKIIIFV 369

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             KK V ++  ++ + G+    +HG+  Q+ R  +L  F+ G   +++A+D+AARGLD+ 
Sbjct: 370 ETKKKVESITRTIRRYGWPAVCMHGDKSQQERDFVLREFRNGKSSILIATDVAARGLDVE 429

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
            + +V N+D PN +E+YIHRIGRTGR+   G ++      + +    +  ++++    +N
Sbjct: 430 GIKYVINYDYPNSSEDYIHRIGRTGRSDTTGTSYAFFTPSNFRQAKDLVSVLKEANQAIN 489

Query: 373 GDLSSL 378
             LS +
Sbjct: 490 PRLSEM 495


>gi|152988314|ref|YP_001347045.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
 gi|150963472|gb|ABR85497.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
          Length = 441

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 135/371 (36%), Positives = 207/371 (55%), Gaps = 3/371 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ A+    + +PTP+Q   IP  L+  D+   AQTG+GKTA+F+LP+L  
Sbjct: 2   FSQFPLHERLLKALDSLSFSEPTPVQAAAIPQALEGRDLRVTAQTGSGKTAAFLLPLLNR 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L        + R LIL PTRELA Q     E++ +   +   L+ GG  F+ Q  +L + 
Sbjct: 62  LLAEEKPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRKN 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +++I TPGR+L+  N G L + +IE+LV+DEADRMLDMGF   +  + +  P  RQTLL
Sbjct: 122 PEIVIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAERQTLL 181

Query: 183 FSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT +   L KV    L+ P+ + +N      E +    + T    + K  LLQ LL  
Sbjct: 182 FSATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVI-TADDVAHKEQLLQWLL-G 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +T    I+F N + +   L   L      V  +HG  DQ+ R   +   K+G ++++VA
Sbjct: 240 NETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + ++E
Sbjct: 300 TDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHNDWNLMSSVE 359

Query: 362 KLIEKKVDWLN 372
           + +++  +  N
Sbjct: 360 RYLKQHFERRN 370


>gi|330886294|gb|EGH20195.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. mori str.
           301020]
          Length = 459

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 134/377 (35%), Positives = 220/377 (58%), Gaps = 8/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++  N+ V  L GG+ F  Q   LE 
Sbjct: 66  INP---RFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIKQTPQRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F+++P+ ++V    + ++ IE  F     +   + A+++ L   
Sbjct: 183 LFSATYPVGIKQLSSKFMRDPQTVKVEALHADSQ-IEQIFYEISPEQRLE-AVVKVLGHF 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 241 RPA--SCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 299 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 358

Query: 362 KLIEKKVDWLNGDLSSL 378
           +L +  ++W   D  S+
Sbjct: 359 ELQKAPLNWQQYDQLSI 375


>gi|67516603|ref|XP_658187.1| hypothetical protein AN0583.2 [Aspergillus nidulans FGSC A4]
 gi|74681494|sp|Q5BFU7|DBP10_EMENI RecName: Full=ATP-dependent RNA helicase dbp10
 gi|40747526|gb|EAA66682.1| hypothetical protein AN0583.2 [Aspergillus nidulans FGSC A4]
 gi|259489152|tpe|CBF89188.1| TPA: ATP-dependent RNA helicase dbp10 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5BFU7] [Aspergillus
           nidulans FGSC A4]
          Length = 936

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 134/406 (33%), Positives = 221/406 (54%), Gaps = 42/406 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIP++++  DV G+A+TG+GKTA+FV+PM+  
Sbjct: 93  FQAMGLNANLLKAIARKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIEK 152

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +    R LIL P+RELA Q     ++ GK  +L   LL+GG   E Q   +   
Sbjct: 153 LKSHSTKF-GARGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFGMMAGN 211

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P TRQTLL
Sbjct: 212 PDIVIATPGRFLHLKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPSTRQTLL 271

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
           FSAT+   L + +   LQ+P  + ++T S  +  +++ F +  +   K+ ALL  L    
Sbjct: 272 FSATLPKSLVEFARAGLQDPTLVRLDTESKISPDLQNAFFSVKSA-EKEGALLYILNEVI 330

Query: 239 ------------------------------------LQSQDTMKNGIIFCNQKKNVVNLC 262
                                               ++   T  + I+F   K +V  L 
Sbjct: 331 KMPTGPTEASLRLKEKGPEDSKNKKRKRAEMERAVNMKESPTKHSTIVFAATKHHVDYLY 390

Query: 263 HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322
             L + GF+V  ++G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D 
Sbjct: 391 SLLREAGFAVSYVYGSLDQTARKIQVQNFRTGISNILVVTDVAARGIDIPILANVINYDF 450

Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           P++ + ++HR+GRT RAGR G +++LV   D  ++  ++  + +K+
Sbjct: 451 PSQPKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRKL 496


>gi|281345231|gb|EFB20815.1| hypothetical protein PANDA_010757 [Ailuropoda melanoleuca]
          Length = 404

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 130/370 (35%), Positives = 203/370 (54%), Gaps = 13/370 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +    + KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 40  FDTMGLREDLLRGIY--AFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 97

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 98  LD---IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 154

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 155 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 214

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 215 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 273

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 274 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 329

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 330 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 389

Query: 360 IEKLIEKKVD 369
           IE+    ++D
Sbjct: 390 IEQYYSTQID 399


>gi|253742309|gb|EES99150.1| DEAD box RNA helicase Vasa [Giardia intestinalis ATCC 50581]
          Length = 658

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 142/378 (37%), Positives = 205/378 (54%), Gaps = 26/378 (6%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-- 63
           LG  P ++  +    Y +PTPIQ   IPL+L   D+   +QTG+GKT SF+ P++T L  
Sbjct: 183 LGFPPGLIRNIEKLHYKQPTPIQENAIPLILSSMDILATSQTGSGKTFSFLSPIVTKLIN 242

Query: 64  ---------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                    E   +    P  +IL PTREL  Q+A    +     +L V L+ GG     
Sbjct: 243 SHAKDTILSEDRESSTSFPLAVILSPTRELTQQIAFMCYQLTFKTDLIVRLVYGGEGARE 302

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L +G D++I TPGR+ D   RG L +  ++I+V+DEAD+MLDMGF P I+++    
Sbjct: 303 QKGLLRKGCDIVIATPGRLKDFLERGCLSLKYVQIMVLDEADKMLDMGFEPQIRDLVYKF 362

Query: 175 PF-------TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATY 225
                    +RQTL+FSAT    +Q +++ +L N  RI +    +T  TI+  F  +A  
Sbjct: 363 DMPGNGSNGSRQTLMFSATFGGGVQNMAKRYLHNEARIHIGQIGTTTTTIKQQFEYIAET 422

Query: 226 AQYS--KKCALLQQLLQSQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
           A  S  K+   L   L+S  ++       +IF   KK+VV +   L   G  VC +HG++
Sbjct: 423 AMKSVDKRIEKLIHXLKSPGSIPTASFLTLIFVETKKDVVYIVTKLLNAGLRVCEMHGDL 482

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
           +QR R   L NFK+G   ++VA+D+A RG+DI  + HV NFD P   + YIHRIGRTGRA
Sbjct: 483 EQRERQNNLKNFKDGKTPVLVATDVAQRGIDIGAIRHVVNFDFPKDIDAYIHRIGRTGRA 542

Query: 340 GRHGKAFTLVAKEDIKHI 357
           G  G A + +  +   HI
Sbjct: 543 GAEGLATSFILLDTPHHI 560


>gi|241737496|ref|XP_002414033.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215507887|gb|EEC17341.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 402

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 210/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ ++I  V++  DV   AQ+GTGKTA+F + +L  
Sbjct: 31  FDAIGLREDLLRGIYAYGFEKPSAIQQRSIKPVIKGRDVIAQAQSGTGKTATFSIGVLQT 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    ++R  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 91  ID---TQMRETQALILSPTRELAGQIQKVILALGDYMNVQCHSCIGGTNLGEDIRKLDYG 147

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L   +I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 148 QHIVSGTPGRVFDMIKRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPCTQVVL 207

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 208 ISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 266

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G+ +++
Sbjct: 267 ----TITQAVIFCNTKRKVDWLSEKMREANFTVSSMHGDMPQKERDAIMKEFRSGSSRVL 322

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 323 ITTDIWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRD 382

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 383 IEQYYSTQIDEMPMNVADL 401


>gi|296086337|emb|CBI31778.3| unnamed protein product [Vitis vinifera]
          Length = 568

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 222/376 (59%), Gaps = 10/376 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++ + LG++ ++V A+ + G  K  PIQ   +   +Q  D+ G A+TGTGKT +F +P++
Sbjct: 115 LEISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIM 174

Query: 61  TILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             + +  A   R R P  L+L PTRELA QV   F +   N  L    + GG P   Q  
Sbjct: 175 DKVIQYNAKHGRGRNPLALVLAPTRELARQVEKEFCESAPN--LDTLCVYGGTPISRQMN 232

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G DV++ TPGRI+D   RG L ++ ++ +V+DEAD+ML +GF   ++ I   +P  
Sbjct: 233 SLDYGVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQN 292

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALL 235
           RQ+++FSATM   ++K+++ +L+NP  I++  ++    AE I    +A+  +  +K +++
Sbjct: 293 RQSMMFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIAS--EMYEKASIV 350

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+         I+F   K++   L +++ +  F   A+HG+I Q  R + LS F++G 
Sbjct: 351 GPLITEHAKGGKCIVFTQTKRDADRLAYAMARN-FRCEALHGDISQSQRERTLSGFRDGH 409

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+D+AARGLDIP+V  + ++++PN +E ++HR GRTGRAG+ G A  + A++  +
Sbjct: 410 FNVLVATDVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQAR 469

Query: 356 HIDAIEKLIEKKVDWL 371
            +  IE+ I  K   L
Sbjct: 470 TVRFIERDIGCKFSEL 485


>gi|148550027|ref|YP_001270129.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida F1]
 gi|148514085|gb|ABQ80945.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 494

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 215/369 (58%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L LS  ++  +   GY   TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 41  FATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNP 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +     R    + L+L PTRELA QVA    +  +   N+ +  L GG+    Q   LE 
Sbjct: 101 INP---RYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEH 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H ++G L+++ +  LV+DEADRMLDMGF   I +I    P  RQTL
Sbjct: 158 GAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTL 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++ +F++NP++++V +   T   IE  F+    Q  ++   + ++L  
Sbjct: 218 LFSATYPAGIKQLAADFMRNPQQVKVES-LHTDNQIEQRFIEIDPQ--QRLEAVTRVL-G 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ + FC  K+   ++   L  +G    A+HG+++QR R ++L+ F   +  ++VA
Sbjct: 274 HYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVA 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   AE ++HR+GRTGRAG  G A +LVA  +     AIE
Sbjct: 334 TDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIE 393

Query: 362 KLIEKKVDW 370
            L +  + W
Sbjct: 394 ALQKSPLRW 402


>gi|313500928|gb|ADR62294.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida BIRD-1]
          Length = 461

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 215/369 (58%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L LS  ++  +   GY   TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 8   FATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNP 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +     R    + L+L PTRELA QVA    +  +   N+ +  L GG+    Q   LE 
Sbjct: 68  INP---RYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEH 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H ++G L+++ +  LV+DEADRMLDMGF   I +I    P  RQTL
Sbjct: 125 GAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++ +F++NP++++V +   T   IE  F+    Q  ++   + ++L  
Sbjct: 185 LFSATYPAGIKQLAADFMRNPQQVKVES-LHTDNQIEQRFIEIDPQ--QRLEAVTRVL-G 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ + FC  K+   ++   L  +G    A+HG+++QR R ++L+ F   +  ++VA
Sbjct: 241 HYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   AE ++HR+GRTGRAG  G A +LVA  +     AIE
Sbjct: 301 TDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIE 360

Query: 362 KLIEKKVDW 370
            L +  + W
Sbjct: 361 ALQKSPLRW 369


>gi|291165175|gb|ADD81192.1| vasa [Katsuwonus pelamis]
          Length = 643

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 131/359 (36%), Positives = 205/359 (57%), Gaps = 14/359 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 207 MTFDEAALCESLRKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 266

Query: 61  T-ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G A  R      P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 267 QQLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTAH 326

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q +++ RG +V+  TPGR+LD   RGK+ +  +  LV+DEADRMLDMGF P ++ +    
Sbjct: 327 QIREISRGCNVVCGTPGRLLDMIGRGKVGLTKLRYLVLDEADRMLDMGFEPDMRRLVGSP 386

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +++Q+++ +FL+     + V         +E  F+    ++S
Sbjct: 387 GMPSKENRQTLMFSATYPEDIQRLAADFLKTDYLFLAVGVVGGACSDVEQTFIQV-TKFS 445

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+   L  LL++   M+  ++F   K+    +   L ++     +IHG+ +QR R + L+
Sbjct: 446 KR-EQLHDLLKTTG-MERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALT 503

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +F+ G   ++VA+ +AARGLDIPDV HV NFD+PN  + Y+HRIGRTGR G  G+A + 
Sbjct: 504 DFRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSF 562


>gi|253689218|ref|YP_003018408.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755796|gb|ACT13872.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 460

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 129/356 (36%), Positives = 207/356 (58%), Gaps = 8/356 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY   TP+Q  T+P VL   DV   A+TG+GKTA+F    + +L++        + L+L 
Sbjct: 23  GYTDMTPVQAATLPAVLSGADVRAKAKTGSGKTAAF---GIGLLDRIVVSDFTTQALVLC 79

Query: 80  PTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QV+    +  +   N+ +  L GG P   Q   L     +++ TPGRI DH  
Sbjct: 80  PTRELADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSLVHAPHIVVGTPGRIQDHLR 139

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +  L ++++++LV+DEADRMLDMGF   I ++ S  P  RQTLLFSAT  +E++++S   
Sbjct: 140 KQSLSLDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQTLLFSATYPEEIEQISARV 199

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            + P+R E+      +  IE  F  T  +  ++  LL  +L       + ++FCN K++ 
Sbjct: 200 QRQPQRFEIADDVKES-AIEQRFYETTKE--QRLPLLISILGHHQP-SSCVVFCNTKRDC 255

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            ++  +L+ +G SV A+HG+++QR R ++L  F   + +++VA+D+AARGLDI ++  V 
Sbjct: 256 QSVFDALDMRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKELELVV 315

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
           NF++    E ++HRIGRTGRAG  G A +L   +++   + IE  +  ++ W   D
Sbjct: 316 NFELAFDPEVHVHRIGRTGRAGMQGLAVSLCTPQEMNRANLIEDYLGMRIKWAAAD 371


>gi|55562721|gb|AAH86320.1| Ddx5 protein [Mus musculus]
          Length = 648

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 14/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 127 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 186

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 187 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 242

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 243 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 302

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 303 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 362

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 363 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 421

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 422 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 481

Query: 353 DIKHI-DAIEKLIE 365
           +IK + D I  L E
Sbjct: 482 NIKQVSDLISVLRE 495


>gi|197099326|ref|NP_001126958.1| probable ATP-dependent RNA helicase DDX5 [Pongo abelii]
 gi|75061603|sp|Q5R4I9|DDX5_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5
 gi|55733290|emb|CAH93327.1| hypothetical protein [Pongo abelii]
          Length = 614

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 14/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 154 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 209

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 270 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 329

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 330 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 388

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 389 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448

Query: 353 DIKHI-DAIEKLIE 365
           +IK + D I  L E
Sbjct: 449 NIKQVSDLISVLRE 462


>gi|332760197|gb|EGJ90493.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-671]
          Length = 435

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 131/352 (37%), Positives = 206/352 (58%), Gaps = 10/352 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   A +   + L+L 
Sbjct: 2   GYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID---ASLFQTQALVLC 58

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N  +  L GG PF  Q   L+    +++ TPGR+LDH  
Sbjct: 59  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 118

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT  + +  +S   
Sbjct: 119 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRV 178

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     + ++FCN KK+ 
Sbjct: 179 QRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPSSCVVFCNTKKDC 234

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +C +L +   S  ++HG+++QR   + L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 235 QAVCDALNEVEQSALSLHGDLEQRD--QTLVRFANGSARVLVATDVAARGLDIKSLELVV 292

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ K++W
Sbjct: 293 NFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNW 344


>gi|168012549|ref|XP_001758964.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689663|gb|EDQ76033.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 504

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 134/356 (37%), Positives = 208/356 (58%), Gaps = 11/356 (3%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-PRTLI 77
           AG+  PTPIQ ++ P+ +Q  DV  +A+TG+GKT  +++P    L   R   R  P  L+
Sbjct: 128 AGFSSPTPIQAQSWPIAMQSKDVVAVAKTGSGKTLGYLVPAFLHLASHRNNSRKGPTALV 187

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           L PTREL  Q+ D   K+G + ++    L GG P   Q + +ERG D+ I TPGR+ D  
Sbjct: 188 LAPTRELVMQIHDECAKFGTSSDIVGTCLYGGAPKGPQLRDIERGVDIAIATPGRLNDFL 247

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
              K+ +  +  LV+DEADRMLDMGF P I+ I       RQTL+++AT   ++++++ +
Sbjct: 248 EGRKVSLKQVSYLVLDEADRMLDMGFEPQIRKIVENTSPQRQTLMYTATWPRKVRRMAAD 307

Query: 198 FLQNPKRIEV--------NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
           FL NP ++ +        N   + A  ++   V       K+  L+ ++L+SQ+     I
Sbjct: 308 FLSNPVQVSIGNVDEFTANKAITQANKLKRLHVEVVESCEKQRRLV-EMLRSQEKGSRII 366

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           IFC+ K+    L   L  + F   AIHG+  Q  R  +LS+F+ G   ++VA+D+AARGL
Sbjct: 367 IFCSTKRACDTLTRCLGHE-FGAAAIHGDKSQDERESVLSHFRNGRTPVLVATDVAARGL 425

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           D+ D+  V N+D P+  ++Y+HRIGRTGR G  G A+TL + +D K+ +A+ K++E
Sbjct: 426 DVKDIRVVVNYDFPSGIDHYVHRIGRTGRGGATGVAYTLFSTKDGKYANALIKILE 481


>gi|303390992|ref|XP_003073726.1| ATP-dependent RNA helicase [Encephalitozoon intestinalis ATCC
           50506]
 gi|303302874|gb|ADM12366.1| ATP-dependent RNA helicase [Encephalitozoon intestinalis ATCC
           50506]
          Length = 400

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 214/371 (57%), Gaps = 10/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +L +   +V A    G  +PT IQ + IP+VL  +D+  ++QTG+GKT +FVLP++
Sbjct: 1   MEFDELNIDDSLVQACQRNGITRPTEIQKQVIPMVLGGNDIIAVSQTGSGKTLAFVLPIV 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + +L K R+       L++ PTREL++Q+A+ F  +G    L V LL+GG  F  Q  +L
Sbjct: 61  SRLLLKNRSFF----CLVVAPTRELSSQIAECFNMFGST-GLRVCLLVGGTNFNLQANQL 115

Query: 120 ERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +++ TPGRI +H  + K      I  LV+DEADR  +  F+  ++ I   +   R
Sbjct: 116 SKHPHIVVGTPGRIAEHILKTKSFKAERIRKLVLDEADRFFEQDFVEDLETIIRSLREKR 175

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLF+ATM++E+ K+S + L  PK I V     T   ++  +  T  ++ K  AL++ L
Sbjct: 176 QTLLFTATMSNEISKLSSSILIKPKTIRVVEGYETVSALKEYYFFTAMKW-KSSALVEFL 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               +   + I+F +       +  +L K GF   A++G + Q  R + +  FKE    +
Sbjct: 235 --EMNPGASTIVFVSMCITARVMSLALSKLGFHSEALYGELSQEKREETMRMFKENKFSV 292

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V +D+ +RGLDI  V  V NFDVP   ++Y+HR+GRT RAGR G A TLV + D++ + 
Sbjct: 293 LVCTDVGSRGLDISHVDLVINFDVPKSGKDYVHRVGRTARAGRAGTAITLVTQYDVEQLQ 352

Query: 359 AIEKLIEKKVD 369
            +E +++K ++
Sbjct: 353 RVEFVLKKSLE 363


>gi|198425852|ref|XP_002130131.1| PREDICTED: similar to p68 RNA helicase isoform 1 [Ciona
           intestinalis]
 gi|198425854|ref|XP_002130146.1| PREDICTED: similar to p68 RNA helicase isoform 2 [Ciona
           intestinalis]
          Length = 585

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 139/361 (38%), Positives = 202/361 (55%), Gaps = 14/361 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRAR 69
           +L  G+  PTPIQ    P  L   D+ GIAQTG+GKT SF+LP +        LE+G   
Sbjct: 129 LLSNGFKAPTPIQAIGWPHALGGQDLVGIAQTGSGKTLSFILPAMIHINAQPYLERGDG- 187

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  L+L PTRELA QV      YG+  ++    + GG     Q + LERG +++I T
Sbjct: 188 ---PIALVLCPTRELAQQVQAVANDYGQLCHIRNTCVYGGASKAPQIRDLERGCEIVIAT 244

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGR++D     K  +     LV+DEADRMLDMGF P I+ I   +   RQTL++SAT   
Sbjct: 245 PGRLIDFLEARKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPK 304

Query: 190 ELQKVSENFLQNPKRIEVNTP--SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
           E+QK++ +FL++   I++ +   S+    ++   V T  + S+K   L + +  +   K 
Sbjct: 305 EVQKLANDFLRDNVHIQIGSVNISANHNILQIVDVCTEDEKSEKLMRLMEEIMGEAENKT 364

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            IIF   K+    L  ++ + G+    IHG+  Q  R  +L+ F+ G   ++VA+D+A+R
Sbjct: 365 -IIFTETKRKCDILTRNMRRDGWPAMCIHGDKSQPERDWVLNEFRTGKSPILVATDVASR 423

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI-DAIEKLIEK 366
           GLD+ D+  V NFD PN+ E+YIHRIGRT RA + G A+T   + + K   D IE L E 
Sbjct: 424 GLDVSDIKFVINFDFPNQCEDYIHRIGRTARANQTGTAYTFFTQANAKQCKDLIEILKEA 483

Query: 367 K 367
           K
Sbjct: 484 K 484


>gi|66800711|ref|XP_629281.1| hypothetical protein DDB_G0292992 [Dictyostelium discoideum AX4]
 gi|74996456|sp|Q54CD8|DDX54_DICDI RecName: Full=ATP-dependent RNA helicase ddx54; AltName:
           Full=ATP-dependent RNA helicase helA; AltName: Full=DEAD
           box protein 54
 gi|60462646|gb|EAL60848.1| hypothetical protein DDB_G0292992 [Dictyostelium discoideum AX4]
          Length = 1091

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 133/381 (34%), Positives = 208/381 (54%), Gaps = 29/381 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L+  ++ A+L  G+  PTPIQ K+IP++L  HD+ G+A+TG+GKT +FV+PM+  
Sbjct: 232 FQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQK 291

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L      V + R +IL PTRELA Q     + + +   L   L++GG   E Q   L R 
Sbjct: 292 LGDHSTTVGV-RAVILSPTRELAIQTFKVVKDFSQGTQLRTILIVGGDSMEDQFTDLARN 350

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++ H     + ++ ++ +V DEADR+ +MGF   +  I S +   RQTLL
Sbjct: 351 PDIIIATPGRLMHHLLETGMSLSKVQYIVFDEADRLFEMGFNEQLTEILSKLSENRQTLL 410

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL--- 239
           FSAT+   L       L NPK I ++T +  +E +   F     ++ +K  +L  LL   
Sbjct: 411 FSATLPSLLVDFVRAGLNNPKLINLDTDTKISENLSLSFFT--LRHEEKLGVLLFLLKDI 468

Query: 240 -----------------------QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
                                  Q Q    + IIF + K +V  +   LE+ G +   IH
Sbjct: 469 IYKKPQLPTTETTTTTTTNNESNQQQQKKSSTIIFVSTKYHVEFIHILLERAGIASTYIH 528

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G +D  +R   L+ F+   + +MV +DLAARG+DIP + +V NFD P + + +IHR+GR 
Sbjct: 529 GYLDPVARKINLAKFRSHQVGVMVVTDLAARGIDIPLLDNVINFDFPPKEKIFIHRVGRV 588

Query: 337 GRAGRHGKAFTLVAKEDIKHI 357
            RAGR G A++LV+ +++ ++
Sbjct: 589 ARAGRSGIAYSLVSPDEVPYM 609


>gi|303317730|ref|XP_003068867.1| ATP-dependent RNA helicase DRS1, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240108548|gb|EER26722.1| ATP-dependent RNA helicase DRS1, putative [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 840

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 136/359 (37%), Positives = 198/359 (55%), Gaps = 3/359 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS  ++  +   G+  PTPIQ K IP+ L   D+ G A TG+GKTA+F++P+L  
Sbjct: 321 FQNFNLSRPILRGLAAVGFSAPTPIQRKAIPIGLLGKDLVGGAVTGSGKTAAFIIPILER 380

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++ 
Sbjct: 381 LLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKQR 440

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 441 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILNTIPKSRQTM 500

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMTD + K+    L  P R+ V++   T  T+   FV     +  K+   L  L  
Sbjct: 501 LFSATMTDSVDKLIRVGLNRPVRLMVDSKKHTVGTLVQEFVRLRPGREGKRMGYLVLLCN 560

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  T +  I+F  QKK            G     +HG++ Q  R+  +  F++G +  ++
Sbjct: 561 TIYTNRV-IVFFRQKKEAHRARIIFGLLGLKAAELHGSMSQEQRINAVEAFRDGKVPFLL 619

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + A
Sbjct: 620 ATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKA 678


>gi|119471856|ref|XP_001258230.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
 gi|134034063|sp|A1DNG2|DBP10_NEOFI RecName: Full=ATP-dependent RNA helicase dbp10
 gi|119406382|gb|EAW16333.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
          Length = 934

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 135/398 (33%), Positives = 211/398 (53%), Gaps = 46/398 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  ++ A+   G+  PTPIQ KTIP+++   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 92  FQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIPMIEK 151

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +V   R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 152 LKSHSTKV-GARGLILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFAMMAGN 210

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P  RQTLL
Sbjct: 211 PDIVIATPGRFLHLKVEMNLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPANRQTLL 270

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   LQ P  + ++T S  +  +++ F +   + S+K   L  +LQ  
Sbjct: 271 FSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQNAFFSV--KSSEKEGALLYILQEV 328

Query: 243 DTMKNG-------------------------------------------IIFCNQKKNVV 259
             M  G                                           I+F   K +V 
Sbjct: 329 IKMPTGPTEVSQQRKEEDASAKNWKNKKRKRAEMEKAVNMRESPTKHSTIVFAATKHHVD 388

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            L   L + GF+V  ++G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N
Sbjct: 389 YLYSLLSEAGFAVSYVYGSLDQTARKIQVQNFRTGMTNILVVTDVAARGIDIPILANVIN 448

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +D P++ + +IHR+GRT RAGR G +++LV   D  ++
Sbjct: 449 YDFPSQPKIFIHRVGRTARAGRKGWSYSLVRDADAPYL 486


>gi|320170169|gb|EFW47068.1| ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 712

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 140/373 (37%), Positives = 198/373 (53%), Gaps = 22/373 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L   ++  +   G   PTPIQI+ IP+ L   D+ GIA TG+GKT  F LP++  
Sbjct: 269 FREMKLPKSIIKHLAKRGIKAPTPIQIEGIPVALSGRDMIGIAFTGSGKTLVFSLPIVMF 328

Query: 63  -----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
                L+ G      P  LIL P+RELA Q  DN + Y K         L VAL +GG+ 
Sbjct: 329 ALEQELKLGFTSGEGPYGLILVPSRELAKQTYDNLQAYAKVLATEGFPLLRVALCMGGVN 388

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q   +  G  +++ TPGR++D   +GK+ ++    L +DEADRM+DMGF   ++ I 
Sbjct: 389 MREQLDSMRDGVHLMVATPGRLIDLLQKGKVNLDICRYLTLDEADRMIDMGFEEDMRTIF 448

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + VN   + A  ++      Y     +
Sbjct: 449 SFFKAQRQTLLFSATMPKKIQDFAKSALVRP--VIVNVGRAGAANLDVVQDVEYVNVEAR 506

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L Q LQ   T    IIF  +K +V  +   L  +G    AIHG   Q  R   + +F
Sbjct: 507 LVYLLQCLQK--TAPPVIIFAEKKADVDEIHEYLLLKGVEAVAIHGGKSQEEREWAIRSF 564

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K+    ++VA+D+AA+GLD PD+ HV NFD+P   E Y+HRIGRTGR G+ G A T V K
Sbjct: 565 KDHLKDVLVATDIAAKGLDFPDIQHVINFDMPEEIETYVHRIGRTGRCGKTGTASTFVNK 624

Query: 352 E-------DIKHI 357
                   D+KH+
Sbjct: 625 TVPESVLLDVKHL 637


>gi|56090441|ref|NP_001007614.1| probable ATP-dependent RNA helicase DDX5 [Rattus norvegicus]
 gi|50927691|gb|AAH79036.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Rattus norvegicus]
 gi|149054596|gb|EDM06413.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
 gi|149054597|gb|EDM06414.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
 gi|149054598|gb|EDM06415.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
          Length = 615

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 14/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 154 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 209

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 270 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 329

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 330 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 388

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 389 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448

Query: 353 DIKHI-DAIEKLIE 365
           +IK + D I  L E
Sbjct: 449 NIKQVSDLISVLRE 462


>gi|296201830|ref|XP_002748194.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 1
           [Callithrix jacchus]
          Length = 614

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 14/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 154 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 209

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 270 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 329

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 330 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 388

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 389 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448

Query: 353 DIKHI-DAIEKLIE 365
           +IK + D I  L E
Sbjct: 449 NIKQVSDLISVLRE 462


>gi|282863822|ref|ZP_06272880.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
 gi|282561523|gb|EFB67067.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
          Length = 496

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 139/416 (33%), Positives = 211/416 (50%), Gaps = 19/416 (4%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FADL L P  + A L A G  +P PIQ  T+P  L   DV G  +TG+GKT +F L +L 
Sbjct: 56  FADLDL-PAPLLATLGAEGVTEPFPIQAATLPNALVGRDVLGRGRTGSGKTLAFGLALLA 114

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                RA  R P  L+L PTRELA QV D    Y ++  L  A ++GG+    Q   L  
Sbjct: 115 RTAGRRADARRPLALVLVPTRELAQQVTDALAPYARSLKLRTATVVGGMSIGRQASALRA 174

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADV++ TPGR+ D   RG   ++ + + V+DEAD+M D+GF+P +  +  LV    Q +
Sbjct: 175 GADVVVATPGRLADLVGRGDCRLDRVAVTVLDEADQMADLGFLPQVTELLDLVRPDGQRM 234

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  E+ ++   +L +P    V+  + T  T+EH  +  + Q + K A   ++   
Sbjct: 235 LFSATLDREVDQLVRRYLHDPVVHSVDPAAGTVTTMEHHVL--HVQGADKYATTTEIAAR 292

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   I+F + K  V  L   L   G    A+HG   Q  R + L  F+ G + ++VA
Sbjct: 293 DGRV---IMFLDTKHAVDRLTAHLRGSGVRAAALHGGKSQPQRTRTLDRFRTGDLTVLVA 349

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +++AARG+ + D+  V N D P   ++Y+HR GRT RAG  GK  TLV  +  + +  + 
Sbjct: 350 TNVAARGIHVDDLDLVVNVDPPTDPKDYLHRAGRTARAGESGKVVTLVLPDQRRELTRLM 409

Query: 362 ------------KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
                       +  E ++  + G  +    PL     +    A+ + P PQ+  G
Sbjct: 410 TEAGVRPQVTQVRSGEAELSRITGARTPSGVPLAGAAPSTERSAKGSAPGPQRRRG 465


>gi|297830944|ref|XP_002883354.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329194|gb|EFH59613.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 615

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 216/376 (57%), Gaps = 10/376 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +  ++LG+SP++V A+   G  K  PIQ   +   +Q  D+ G A+TGTGKT +F +P++
Sbjct: 120 LAISELGISPEIVKALKGRGIEKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPVI 179

Query: 61  TILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             + K  A   R + P+ L+L PTRELA QV   F +   +  L    L GG P   Q +
Sbjct: 180 DKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPS--LDTICLYGGTPIGQQMR 237

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G DV + TPGRI+D   RG L ++ ++ +V+DEAD+ML +GF   ++ I   +P  
Sbjct: 238 ELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPEK 297

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALL 235
           RQ+++FSATM   ++ +++ +L NP  I++  ++    A+ I    +A  A    + +++
Sbjct: 298 RQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIA--ADSYGRASII 355

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+         I+F   K++   L   L K  F   A+HG+I Q  R + L+ F++G 
Sbjct: 356 GPLVNEHGKGGKCIVFTQTKRDADRLAFGLAKS-FKCEALHGDISQAQRERTLAGFRDGN 414

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+D+AARGLD+P+V  V ++++PN  E ++HR GRTGRAG+ G A  +  +E  +
Sbjct: 415 FNILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQEQSR 474

Query: 356 HIDAIEKLIEKKVDWL 371
            +  IEK +  + + L
Sbjct: 475 AVKMIEKEVGSRFNEL 490


>gi|163801460|ref|ZP_02195359.1| DNA and RNA helicase [Vibrio sp. AND4]
 gi|159174949|gb|EDP59749.1| DNA and RNA helicase [Vibrio sp. AND4]
          Length = 410

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 135/366 (36%), Positives = 208/366 (56%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS +++ A L     +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 1   MPFSTLSLSSELIYA-LPKDVKEPTDIQALAIPELLNGKDVLALANTGSGKTFAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +    + LIL PTRELA QV+    + G+   L    L GG+    Q + L 
Sbjct: 60  EKLSVNPEQ----KALILVPTRELATQVSQAINQVGQLLGLNAVCLCGGVDKAQQQQALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ T GR++D  + G L +++I+ LV+DEADR+LDMGF P +QN+       RQT
Sbjct: 116 TNPHIIVATTGRLVDFADNG-LDLSSIDYLVLDEADRLLDMGFWPDVQNVAGQTSNQRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT +++L+  ++  +  PK++ V+  +ST + I         + SK  AL++  L 
Sbjct: 175 AMFSATFSEQLKCKAKQLMNAPKQVAVHQENSTNQDIAETLYLVN-KGSKTKALIE--LI 231

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q++    ++F + K+N   L   L K G +  A+HGN  Q  R + L+ FK G  Q+++
Sbjct: 232 KQNSWTQALVFVSAKENADGLAKKLNKTGITTNALHGNKSQVEREEALAQFKSGQTQVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AENYIHR+GRT RAG+ G A +LV   + + + AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAENYIHRVGRTARAGQQGTAMSLVCHGEAEALAAI 351

Query: 361 EKLIEK 366
             L  +
Sbjct: 352 RNLTRR 357


>gi|158796|gb|AAA29013.1| Mab4611 antigen (vasa) [Drosophila melanogaster]
          Length = 648

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 126/361 (34%), Positives = 209/361 (57%), Gaps = 8/361 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++  V  +GY  PTPIQ  +IP++    D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 234 FTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSK 293

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L +    + +  P+  I+ PTRELA Q+ +   K+     L + ++ GG  F  QN+ + 
Sbjct: 294 LLEDPHELELGRPQVCIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECIT 353

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TR 178
           RG  V+I TPGR+LD  +R  +   +   +V+DEADRMLDMGF   ++ I + V      
Sbjct: 354 RGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEH 413

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT  +E+Q+++  FL+N   + +         ++   +    +Y+K+  L++ L
Sbjct: 414 QTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQT-IYEVNKYAKRSKLIEIL 472

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +  D     I+F   K+    L   L ++ F   +IHG+  Q  R + L +FK G++++
Sbjct: 473 SEQADGT---IVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKV 529

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+ +A+RGLDI ++ HV N+D+P++ ++Y+HRIGRTGR G +G+A +    E  + I 
Sbjct: 530 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFHPEKDRAIA 589

Query: 359 A 359
           A
Sbjct: 590 A 590


>gi|70949030|ref|XP_743963.1| snrnp protein [Plasmodium chabaudi chabaudi]
 gi|56523710|emb|CAH74477.1| snrnp protein, putative [Plasmodium chabaudi chabaudi]
          Length = 667

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 134/380 (35%), Positives = 204/380 (53%), Gaps = 33/380 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  LS  ++ A+  A Y KPTPIQ++ IP+ L+  D+ GIA+TG+GKTA+FVLPML+ 
Sbjct: 245 WEESNLSSDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSY 304

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +++            P  LI+ P+RELA Q+ +   K+    +     ++GG   EAQ  
Sbjct: 305 VKQLPPLTYETSQDGPYALIIAPSRELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQAF 364

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG +++I TPGR+ D   +   ++N    ++IDEADRM+DMGF   +  I   +P +
Sbjct: 365 ELRRGVEIVIGTPGRLQDCLEKAYTVLNQCNYVIIDEADRMMDMGFEDAVHFILDNIPTS 424

Query: 178 ------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
                                   R T +FSATM   ++++S  +L+ P  I +  P + 
Sbjct: 425 NLKSEDDALALQEEMMAKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGAG 484

Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
             +IE      +    KK   LQ+LL+  +     I+F NQKK    +  S+ K  F   
Sbjct: 485 KRSIEQKL--EFITEGKKKQKLQELLEIYEPPI--IVFVNQKKVADIIAKSISKMKFKAI 540

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
           A+HG   Q  R + L+ FK G   ++VA+D+A RG+D+  V  V NFD+P    +Y HRI
Sbjct: 541 ALHGGKVQEMREEALNAFKNGEFDILVATDVAGRGIDVHGVKLVINFDLPKDIASYTHRI 600

Query: 334 GRTGRAGRHGKAFTLVAKED 353
           GRTGRAG  G A + V ++D
Sbjct: 601 GRTGRAGMKGLAISFVTEQD 620


>gi|255081552|ref|XP_002507998.1| predicted protein [Micromonas sp. RCC299]
 gi|226523274|gb|ACO69256.1| predicted protein [Micromonas sp. RCC299]
          Length = 481

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 130/377 (34%), Positives = 211/377 (55%), Gaps = 17/377 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D+ L  K++  +    + KPTPIQ + IP++    DV G A+TG+GKTA+F +PM+  
Sbjct: 50  FEDMNLDTKIMMDIKYKEFDKPTPIQAQAIPVICSGRDVLGCAETGSGKTAAFSIPMIQH 109

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            + +    R   P  +++ PTRELA Q+   A  F +  K +  T+  ++GG     Q  
Sbjct: 110 CLQQPEIKRGDGPFAIVMAPTRELAQQIEKEAKIFSRSSKGFKTTI--VVGGTNMSEQRM 167

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G +V + TPGR++DH ++G   +  + ++++DEADRMLDMGF P I+ +   +P  
Sbjct: 168 DLKNGVEVCVATPGRLIDHLHQGNTNLARVSLVILDEADRMLDMGFEPQIREVMMNLPKP 227

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQ-YSKKCALL 235
            QTLLFSATM  E++ ++ ++L  P +++V   S  T+   +H      +Q   + C LL
Sbjct: 228 HQTLLFSATMPVEVEALAADYLNKPVKVKVGAVSVPTSNVAQHLEKLVDSQKVDRLCELL 287

Query: 236 QQLLQSQDTMKNG------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
             L +  +  K G      ++F  +K     +   L  +G +  A HG   Q+ R   L+
Sbjct: 288 --LEEKAEAEKFGGQLPMTVVFVERKARADEIMTLLNAEGVAAAAFHGGRSQQEREAALA 345

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F  G   ++VA+D+AARGLD+  V HV N D+P   E+Y+HR+GRTGRAG  G+A +  
Sbjct: 346 DFTTGRCAVLVATDVAARGLDVKGVQHVVNLDLPRMFEDYVHRVGRTGRAGMTGRATSFY 405

Query: 350 AKEDIKHIDAIEKLIEK 366
              D   +  I++ +++
Sbjct: 406 TDRDSFLVAQIKRALQE 422


>gi|4758138|ref|NP_004387.1| probable ATP-dependent RNA helicase DDX5 [Homo sapiens]
 gi|300793700|ref|NP_001178324.1| probable ATP-dependent RNA helicase DDX5 [Bos taurus]
 gi|73965213|ref|XP_850467.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 2 [Canis
           familiaris]
 gi|109116805|ref|XP_001109860.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 [Macaca
           mulatta]
 gi|297487273|ref|XP_002696148.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 2 [Bos
           taurus]
 gi|301778273|ref|XP_002924553.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Ailuropoda melanoleuca]
 gi|332227004|ref|XP_003262677.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 [Nomascus
           leucogenys]
 gi|129383|sp|P17844|DDX5_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5; AltName: Full=RNA helicase p68
 gi|35220|emb|CAA36324.1| unnamed protein product [Homo sapiens]
 gi|38318|emb|CAA33751.1| unnamed protein product [Homo sapiens]
 gi|2599360|gb|AAB84094.1| RNA helicase p68 [Homo sapiens]
 gi|16359122|gb|AAH16027.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Homo sapiens]
 gi|30582725|gb|AAP35589.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase,
           68kDa) [Homo sapiens]
 gi|61362303|gb|AAX42197.1| DEAD box polypeptide 5 [synthetic construct]
 gi|61362310|gb|AAX42198.1| DEAD box polypeptide 5 [synthetic construct]
 gi|119614608|gb|EAW94202.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, isoform CRA_a [Homo
           sapiens]
 gi|119614609|gb|EAW94203.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, isoform CRA_a [Homo
           sapiens]
 gi|123979568|gb|ABM81613.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [synthetic construct]
 gi|123994197|gb|ABM84700.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [synthetic construct]
 gi|168277560|dbj|BAG10758.1| ATP-dependent RNA helicase DDX5 [synthetic construct]
 gi|197692215|dbj|BAG70071.1| ATP-dependent RNA helicase DDX5 [Homo sapiens]
 gi|296476161|gb|DAA18276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 2 [Bos taurus]
          Length = 614

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 14/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 154 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 209

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 270 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 329

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 330 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 388

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 389 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448

Query: 353 DIKHI-DAIEKLIE 365
           +IK + D I  L E
Sbjct: 449 NIKQVSDLISVLRE 462


>gi|213409157|ref|XP_002175349.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28
           [Schizosaccharomyces japonicus yFS275]
 gi|212003396|gb|EEB09056.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28
           [Schizosaccharomyces japonicus yFS275]
          Length = 672

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 128/380 (33%), Positives = 211/380 (55%), Gaps = 29/380 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ +  L  KV   +    Y +P+ IQ   IPL+LQR+D+ GIA+TG+GKTA+FV+P++T
Sbjct: 257 NWEESSLPEKVQATLKKVKYKEPSAIQRAAIPLLLQRNDIIGIAETGSGKTAAFVIPLVT 316

Query: 62  ILEKGRA--RVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + +  A     M   P  +IL PTRELA Q+     K+ +   L    ++GG  FE Q+
Sbjct: 317 HISRLPALDDTNMHLGPYAIILAPTRELAQQIQVEASKFSEPLGLRCVAVVGGHAFEEQS 376

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI-QNITSLVP 175
            ++ +GA +++ TPGR++D   R   +++    +V+DEADRM+DMGF   + + +TSL P
Sbjct: 377 FQMSQGAHIVVATPGRLVDCLERRVFVLSQCYFVVMDEADRMVDMGFEEDVNKALTSLPP 436

Query: 176 F----------------------TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
                                   RQT++FSAT+   ++ +++ +L  P  + + T    
Sbjct: 437 SGHDDDEAMVAGEDLLRSTRPTRARQTVMFSATLPTRVENLAKRYLNKPIMLTIGTIGQA 496

Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            + +E   V   A  +K+   L+++L +       ++F N K+N  +L  +L   G+ V 
Sbjct: 497 VDRVEQ-RVEMIADDAKRRKRLEEILNTNRYAPPIVVFVNLKRNCESLAKALYNMGWRVV 555

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            +HG+  Q  R + +   +  +  ++VA+DLA RG+DIP+V  V N+++    E+Y HRI
Sbjct: 556 TLHGSKSQEQRERAIEQLRNHSADILVATDLAGRGIDIPNVSLVVNYNMAKSIEDYTHRI 615

Query: 334 GRTGRAGRHGKAFTLVAKED 353
           GRTGRAG+HG A T +  ED
Sbjct: 616 GRTGRAGKHGTAITFLGPED 635


>gi|194216755|ref|XP_001495197.2| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX5
           (DEAD box protein 5) (RNA helicase p68) [Equus caballus]
          Length = 614

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 14/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 154 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 209

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 270 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 329

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 330 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 388

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 389 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448

Query: 353 DIKHI-DAIEKLIE 365
           +IK + D I  L E
Sbjct: 449 NIKQVSDLISVLRE 462


>gi|145351012|ref|XP_001419882.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580115|gb|ABO98175.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 440

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 130/357 (36%), Positives = 202/357 (56%), Gaps = 9/357 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FAD G S +++   + A +  P+PIQ ++ P+++  HD+ GIA TG+GKT +F +P LT 
Sbjct: 31  FADAGFSKELL--RVTAQFKTPSPIQAQSWPIIMSGHDMVGIAATGSGKTLAFGMPALTQ 88

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I  +   +   P  L+L PTRELA Q A  F+  G+   +    + GG P   Q  +++ 
Sbjct: 89  IHSQPPCKPGQPICLVLAPTRELAQQTAKVFDDAGEASGVRCVCVYGGAPKYEQKAQMKA 148

Query: 122 G--ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           G  A V++ TPGR+ D    G + ++ + +LV+DEADRMLD+GF P I+ I       RQ
Sbjct: 149 GGGAAVIVATPGRLRDFMEEGVIKLDRVTMLVLDEADRMLDLGFEPEIRAIAGATRADRQ 208

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKK--CALLQ 236
           T++FSAT    +Q ++  F+ NP ++ +       +++I         Q   +    +++
Sbjct: 209 TVMFSATWPQSVQSLASEFMCNPIKVRIGAEGLKASQSITQIVEVVEPQDKDRHLARVMK 268

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q L     +   +IF   KK   NL   L ++  +VC IHG++ Q  R K +  FK+GT 
Sbjct: 269 QYLGKGKEVPRTLIFGLYKKECANLHQRLSREWPAVC-IHGDMSQHDREKSVDAFKKGTS 327

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           ++++A+D+AARGLDI +V +V N+  P   E+Y+HRIGRTGRAG  G A T     D
Sbjct: 328 RILIATDVAARGLDIKEVEYVINYTFPLTTEDYVHRIGRTGRAGATGLAHTFFTLHD 384


>gi|168010159|ref|XP_001757772.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691048|gb|EDQ77412.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 753

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 137/365 (37%), Positives = 200/365 (54%), Gaps = 9/365 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  ++ A    GY +PTPIQ   IPL L   D+CG A TG+GKT +F LPML  
Sbjct: 130 FGELNLSRPLIRACETLGYREPTPIQAACIPLALTGRDICGSAVTGSGKTGAFALPMLER 189

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     R+   R LIL PTRELA QV    +K  +  ++T A+++GG+  + Q   L   
Sbjct: 190 LLYRPRRIPAIRCLILTPTRELAVQVHSMVQKLAQFTDVTSAIVVGGLSSKVQEVALRAR 249

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D+++ TPGR+LDH  N   + + ++ ILV+DEADR+L++GF   +  +    P  RQT+
Sbjct: 250 PDIVVATPGRMLDHLQNSLSVGLEDLSILVLDEADRLLELGFTQEVHELVRQCPKRRQTM 309

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVN----TPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           LFSATMT+E+  +    L +P R+  +     P S +E +    +    +  K+  LL  
Sbjct: 310 LFSATMTEEVSNLINLSLNSPVRLSADPSTKRPVSLSEEV--VKIRPALENDKEAVLLA- 366

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L ++   +  IIF   K     L       G     +HGN+ Q  R+  L +F++  + 
Sbjct: 367 -LCTRTFKEKVIIFSGMKVEAHRLKILFGLAGLKAAELHGNLTQAMRLDALESFRKQEVD 425

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++A+D+AARGLDI  V  V NF  P+    Y+HR+GRT RAGR G A T V + +   +
Sbjct: 426 FLIATDVAARGLDIVGVETVINFHCPSDITVYVHRVGRTARAGRKGCAVTFVTERERSLL 485

Query: 358 DAIEK 362
            AI K
Sbjct: 486 KAIAK 490


>gi|301632627|ref|XP_002945383.1| PREDICTED: ATP-dependent RNA helicase rhlE-like [Xenopus (Silurana)
           tropicalis]
          Length = 564

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 144/411 (35%), Positives = 224/411 (54%), Gaps = 56/411 (13%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCG-------IAQTGTGKTASF 55
           F  LGL+ ++V AV D GY +PT +Q K IP+ + R    G        +QTG+GKTA+F
Sbjct: 34  FVRLGLATELVQAVRDLGYTQPTAVQEKAIPMAMGRDAEAGRFIDLMVSSQTGSGKTAAF 93

Query: 56  VLPMLTILEKGRA--------------------------RVR-------------MPRTL 76
           +LP+L  L + +A                          R R             +P  L
Sbjct: 94  LLPVLHTLVRQQAGQQASERAEYERLCAEATARGEATPKRTRRKDPTNPRNFKAAVPGAL 153

Query: 77  ILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           IL PTRELA QVA D  +       L VA ++GG+P++ Q  KL+  A++++ TPGR+LD
Sbjct: 154 ILCPTRELAQQVAHDAIDLVRHCKGLRVANVVGGMPYQLQIAKLQ-NANLVVATPGRLLD 212

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
                ++ ++ ++ LV+DEADRMLD+GF   +  I  L    +QT++FSAT    +Q+++
Sbjct: 213 LQRSMQIKLDQVQFLVVDEADRMLDLGFSDDLAEINQLTSQRKQTMMFSATFAPRIQQLA 272

Query: 196 ENFLQNP----KRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQSQDTMKNGII 250
              + +     +++ +++P      I+   F A  AQ+ +K  +L   L+   ++   I+
Sbjct: 273 MRVMHDGGSAVQKLTIDSPQEKHANIKQVLFWADNAQHKRK--MLDHWLRDA-SIDQAIV 329

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F + +     L + L++ GFS  A+HG + Q  R + L   + G +Q++VA+D+AARG+D
Sbjct: 330 FASTQMECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGID 389

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +P + HVFNF +P +AE+Y HRIGRTGRAGR G A T     D + I  IE
Sbjct: 390 VPTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIE 440


>gi|291406391|ref|XP_002719530.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 3
           [Oryctolagus cuniculus]
          Length = 614

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 14/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 154 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 209

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 270 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 329

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 330 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 388

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 389 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448

Query: 353 DIKHI-DAIEKLIE 365
           +IK + D I  L E
Sbjct: 449 NIKQVSDLISVLRE 462


>gi|269104380|ref|ZP_06157076.1| ATP-dependent RNA helicase DbpA [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161020|gb|EEZ39517.1| ATP-dependent RNA helicase DbpA [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 437

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 128/359 (35%), Positives = 204/359 (56%), Gaps = 8/359 (2%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84
           TPIQ +++P++L   D+    +TG+GKTA+F L +L  L   R RV+   TL+L PTREL
Sbjct: 2   TPIQAQSLPIILAGQDIIAQGKTGSGKTAAFGLGLLNNLNVKRFRVQ---TLVLCPTREL 58

Query: 85  AAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           A QVA    +  +  +N+ V  L GG+PF  Q   LE GA +++ TPGR+ +H  +G L 
Sbjct: 59  ADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQIGSLEHGAHIIVGTPGRVEEHLRKGNLS 118

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           ++N+  LV+DEADRML+MGF   I  +    P  RQTLLFSAT   ++  ++ + +  P 
Sbjct: 119 LDNLNTLVLDEADRMLEMGFQDAIDAVIDCAPKQRQTLLFSATYPTQIASIANSIMNKPA 178

Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
            ++V      +   +H +     +         +LL ++   ++ +IFCN K+    +  
Sbjct: 179 MVKVEATHDNSSISQHFYKVDNNEERMDAV---RLLLAKHHPESAVIFCNTKREAQEVAD 235

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
           +L  +GFS  A+HG+++QR R + L      +  ++VA+D+AARGLDI  +  V N+ + 
Sbjct: 236 TLVDEGFSALALHGDLEQRERDRTLVRLANKSCSILVATDVAARGLDIDALDAVINYHLA 295

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN-GDLSSLNPP 381
              E ++HRIGRTGRAG  G A +L + ++   +  +E  +++ +      D S LN P
Sbjct: 296 RDTEVHVHRIGRTGRAGSKGIACSLFSDKEHYKVALLEDYLDRPISGEALPDQSVLNQP 354


>gi|224139612|ref|XP_002323192.1| predicted protein [Populus trichocarpa]
 gi|222867822|gb|EEF04953.1| predicted protein [Populus trichocarpa]
          Length = 551

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 131/369 (35%), Positives = 218/369 (59%), Gaps = 14/369 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++ + LG+S ++V A+   G  K  PIQ   +   +Q  D+ G A+TGTGKT +F +P+L
Sbjct: 42  LEISRLGISQEIVGALAKKGITKLFPIQRAVLEPAMQGKDMFGRARTGTGKTLAFGIPIL 101

Query: 61  -TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             IL+      R R P  +++ PTRELA QV   F +   + ++T   L GG P   Q +
Sbjct: 102 DKILQFNAQHGRGRYPLGIVMAPTRELARQVEKEFREAAPSLDITC--LYGGTPISQQMR 159

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G DV++ TPGRI+D   RG L+++ ++ +V+DEAD+ML +GF+  I+ I S VP  
Sbjct: 160 DLEYGVDVVVGTPGRIIDLMKRGSLVLSEVQHVVLDEADQMLGVGFVDDIETILSSVPQK 219

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVAT--YAQYSKKCA 233
           R ++ FSATM   ++++   +L++P  I++  ++    AE I    +A+  YA    K +
Sbjct: 220 RHSMCFSATMPSWIRELVRKYLKDPLTIDLVGDSDKKLAEGITLYSIASDLYA----KAS 275

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +L  L+         I+F   K++   L +++ K  +   A+HG+I Q  R + LS F+E
Sbjct: 276 ILGPLITEHAKGGKCIVFTETKRDADRLAYAMAKT-YKCEALHGDISQSVRERTLSGFRE 334

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+D+AARGLD+P+V  + ++ +P  +E ++HR GRTGRAG+ G A  +  +++
Sbjct: 335 GHFNILVATDVAARGLDVPNVDLIIHYALPRCSETFVHRSGRTGRAGKKGTAILIYTQDE 394

Query: 354 IKHIDAIEK 362
            + +  IE+
Sbjct: 395 SRQVRIIER 403


>gi|83816893|ref|NP_031866.2| probable ATP-dependent RNA helicase DDX5 [Mus musculus]
 gi|26354006|dbj|BAC40633.1| unnamed protein product [Mus musculus]
 gi|74141529|dbj|BAE38540.1| unnamed protein product [Mus musculus]
 gi|74177712|dbj|BAE38954.1| unnamed protein product [Mus musculus]
 gi|82568932|gb|AAI08370.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|120537322|gb|AAI29875.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|123243266|emb|CAM18566.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|127799027|gb|AAH62916.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|148702364|gb|EDL34311.1| mCG2872, isoform CRA_a [Mus musculus]
 gi|148702366|gb|EDL34313.1| mCG2872, isoform CRA_a [Mus musculus]
 gi|148702367|gb|EDL34314.1| mCG2872, isoform CRA_a [Mus musculus]
          Length = 615

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 14/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 154 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 209

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 270 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 329

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 330 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 388

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 389 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448

Query: 353 DIKHI-DAIEKLIE 365
           +IK + D I  L E
Sbjct: 449 NIKQVSDLISVLRE 462


>gi|71650107|ref|XP_813758.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70878673|gb|EAN91907.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 630

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 130/359 (36%), Positives = 207/359 (57%), Gaps = 16/359 (4%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-------EKGRARVRMP 73
           Y KPTP+Q   IP+VL  HD+   AQTG+GKTA++++P+++ +        +G+     P
Sbjct: 150 YQKPTPVQKYGIPVVLCGHDLMACAQTGSGKTAAYLIPLVSSILSNVTPNHQGQGSRSSP 209

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
             L++ PTREL+ Q+ +   K+     +   ++ GG     Q  +L RG  +L+ TPGR+
Sbjct: 210 AALVMAPTRELSIQIHEEGRKFTYRTGIRCVVVYGGADPRHQVHELSRGCGLLVATPGRL 269

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS------LVPFTRQTLLFSATM 187
            D F RG +  ++I  +V+DEADRMLDMGF P I+ I          P  RQTLL+SAT 
Sbjct: 270 WDVFTRGYVTFSSIRFMVLDEADRMLDMGFEPQIRMIVQGQESDMPPPGQRQTLLYSATF 329

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
             E+Q+++  FL     ++V    ST E I    V       K+  LL+ L ++Q+ +  
Sbjct: 330 PTEIQQLAREFLHRHYFLQVGRVGSTTENITQD-VRWVEDNDKREHLLRLLHENQNQLI- 387

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            ++F  +K++   L   L     +  +IHG+  QR R + L  FK  + Q++VA+D+A+R
Sbjct: 388 -LVFVEKKRDADYLERFLRNNRVACASIHGDRVQREREEALKMFKSASCQVLVATDVASR 446

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           GLDIPDV  V  +D+P+  ++Y+HRIGRTGRAG+ G+A +   +++   +D +  L+ +
Sbjct: 447 GLDIPDVSIVIQYDMPSNIDDYVHRIGRTGRAGKVGRAISFFNEKNRNIVDDLVPLLNE 505


>gi|50312293|ref|XP_456179.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74689956|sp|Q6CIR0|DBP10_KLULA RecName: Full=ATP-dependent RNA helicase DBP10
 gi|49645315|emb|CAG98887.1| KLLA0F24684p [Kluyveromyces lactis]
          Length = 973

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 138/417 (33%), Positives = 220/417 (52%), Gaps = 54/417 (12%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  GLS  V+  +   G+ +PTPIQ KTIPL+LQ+ D+ G+A+TG+GKTA+FVLPM+  
Sbjct: 128 FASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK 187

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A++ + R +IL P+RELA Q    F+++ K  +L   LL GG   E Q   +   
Sbjct: 188 LKTHSAKIGV-RAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGN 246

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV+I TPGR L       L + ++E +V DEADR+ +MGF   +  +    P  RQTLL
Sbjct: 247 PDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLL 306

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L   ++  L NP  + ++  +  +E +E  F++   +  ++ A L  LLQ  
Sbjct: 307 FSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISI--KKDEREANLLYLLQEA 364

Query: 243 DTM---------------------------------------------------KNGIIF 251
             M                                                   K  I+F
Sbjct: 365 IKMPVATESQIKKLKQQNDADSDSDDSEDEKKKKAKKAKKSKRRLPNANEMPSEKATIVF 424

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
              + +V  +   L+  G+ V  I+G ++Q +R + L NF+ G   ++V +D+AARG+DI
Sbjct: 425 VPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDI 484

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           P + +V N+ +P  ++ +IHR+GRT RAG  G AF++V++ ++ ++  +E  + KK+
Sbjct: 485 PLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVSENELPYLLDLELFLGKKI 541


>gi|205364353|gb|ACI04543.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Rattus norvegicus]
          Length = 614

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 14/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 154 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 209

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 270 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 329

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 330 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 388

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 389 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448

Query: 353 DIKHI-DAIEKLIE 365
           +IK + D I  L E
Sbjct: 449 NIKQVSDLISVLRE 462


>gi|123325507|gb|ABM74410.1| vasa protein [Botrylloides violaceus]
          Length = 630

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 135/367 (36%), Positives = 200/367 (54%), Gaps = 23/367 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D  L   V   V  A Y KPTP+Q  +IP+V    D+   AQTG+GKTA+F+LP+L  
Sbjct: 202 FDDAQLPETVRDNVRKANYTKPTPVQKYSIPIVNGDRDLMACAQTGSGKTAAFLLPVLAG 261

Query: 62  ILEKGRARV------RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           I   G   V      + P+ +I+ PTREL  Q+     K+ ++  +   +  GG    +Q
Sbjct: 262 IFRNGLKSVDSFSGKQTPQAIIVGPTRELVYQIFIEARKFARSTMIKPVVAYGGTSVRSQ 321

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG ++LI TPGR+LD   +GK+    +E L++DEADRMLDMGF P I+ + +   
Sbjct: 322 LSDLSRGCNILIATPGRLLDFITKGKVSCECVEYLILDEADRMLDMGFEPEIRRLVAAPG 381

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNP------KRIEVNTPSSTAETIEHCFVATY 225
                TR TL+FSAT  DE+QK++  FL+        +R+       T   ++       
Sbjct: 382 MPDKNTRHTLMFSATFPDEIQKLAHEFLREDFLFLTVRRVGGACSDVTQSMVQ------I 435

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            Q  K+  L++ L    +T    ++F + K+N   L   L ++G    +IHG+  QR R 
Sbjct: 436 DQDDKRDKLMELLADVAETAARTLVFVDTKRNADFLATFLSQEGLPTTSIHGDRQQRERE 495

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L +FK G   +++A+ +AARGLDIP V HV N+D+P+  + Y+HRIGRTGR G  G A
Sbjct: 496 TALLDFKNGRCPILIATSVAARGLDIPKVEHVINYDLPSDIDEYVHRIGRTGRCGNLGSA 555

Query: 346 FTLVAKE 352
            +  + +
Sbjct: 556 TSFYSDD 562


>gi|255582203|ref|XP_002531894.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223528461|gb|EEF30493.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 789

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 127/356 (35%), Positives = 206/356 (57%), Gaps = 3/356 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LSP V   V   GY  PTPIQ KT+P++L   DV  +A+TG+GKTA+F++PML  
Sbjct: 29  FESLNLSPNVYNGVKRKGYRVPTPIQRKTMPIILSGSDVVAMARTGSGKTAAFLIPMLER 88

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K        R LIL PTR+LA Q     ++ G+  +L  +LL+GG   E+Q ++L + 
Sbjct: 89  L-KQHVSQGGARALILSPTRDLALQTLKFTKELGRFTDLRASLLVGGDSMESQFEELAQN 147

Query: 123 ADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR++ H +    + +  +E +V DEAD +  MGF   +  I + +   RQTL
Sbjct: 148 PDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTL 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L + ++  L++P+ + ++  +  +  ++  F  T  Q  K  ALL  + + 
Sbjct: 208 LFSATLPSALAEFAKAGLRDPQLVRLDVDTKISPDLKTVFF-TLRQEEKYAALLYLVREH 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  +IF + K +V  L     ++G      +G++DQ +R   +S F+     L++ 
Sbjct: 267 ISSDQQTLIFVSTKHHVEFLNILFREEGIEPSVCYGDMDQDARKIHVSRFRAQKTMLLIV 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +D+AARG+DIP + +V N+D P + + ++HR+GR  RAGR G AF+ V  ED+ ++
Sbjct: 327 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMPYL 382


>gi|30584123|gb|AAP36310.1| Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA
           helicase, 68kDa) [synthetic construct]
 gi|60653929|gb|AAX29657.1| DEAD box polypeptide 5 [synthetic construct]
          Length = 615

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 14/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 154 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 209

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 270 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 329

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 330 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 388

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 389 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448

Query: 353 DIKHI-DAIEKLIE 365
           +IK + D I  L E
Sbjct: 449 NIKQVSDLISVLRE 462


>gi|30062866|ref|NP_837037.1| ATP-dependent RNA helicase DbpA [Shigella flexneri 2a str. 2457T]
 gi|56479969|ref|NP_707684.2| ATP-dependent RNA helicase DbpA [Shigella flexneri 2a str. 301]
 gi|110805760|ref|YP_689280.1| ATP-dependent RNA helicase DbpA [Shigella flexneri 5 str. 8401]
 gi|30041114|gb|AAP16844.1| ATP-dependent RNA helicase [Shigella flexneri 2a str. 2457T]
 gi|56383520|gb|AAN43391.2| ATP-dependent RNA helicase [Shigella flexneri 2a str. 301]
 gi|110615308|gb|ABF03975.1| ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401]
 gi|281601230|gb|ADA74214.1| ATP-dependent RNA helicase [Shigella flexneri 2002017]
 gi|313650581|gb|EFS14984.1| ATP-independent RNA helicase dbpA [Shigella flexneri 2a str. 2457T]
 gi|332757684|gb|EGJ88015.1| ATP-independent RNA helicase dbpA [Shigella flexneri 4343-70]
 gi|333004752|gb|EGK24274.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-218]
 gi|333018569|gb|EGK37863.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-304]
          Length = 455

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 133/364 (36%), Positives = 211/364 (57%), Gaps = 10/364 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +   + L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L +   S  ++HG+++QR   + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVEQSALSLHGDLEQRD--QTLVRFANGSARVLVATDVAA 300

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 301 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 360

Query: 367 KVDW 370
           K++W
Sbjct: 361 KLNW 364


>gi|74210167|dbj|BAE21355.1| unnamed protein product [Mus musculus]
          Length = 690

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 209/386 (54%), Gaps = 13/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 169 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 228

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 229 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 284

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 285 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 344

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 345 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 404

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 405 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 463

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 464 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 523

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           +IK +  +  ++ +    +N  L  L
Sbjct: 524 NIKQVSDLISVLREANQAINPKLLQL 549


>gi|118574850|gb|ABL07003.1| DH [Medicago sativa]
          Length = 406

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 205/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++G+   ++  + + G+ KP+ IQ + +  ++Q  DV   AQ+GTGKT+   L +  +
Sbjct: 35  FEEMGIKDDLLRGIYNYGFEKPSAIQQRAVAPIIQGRDVIAQAQSGTGKTSMIALTVCQV 94

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + LI+ PTRELA+Q        G   N+     IGG       +KLE G
Sbjct: 95  VDTS---VREVQALIVSPTRELASQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEHG 151

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DE+D ML  GF   I ++   +P   Q  L
Sbjct: 152 VHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCL 211

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 212 ISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 270

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   +    F+V ++HG++ QR R  I+S F+ GT +++
Sbjct: 271 ----TITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQRERDAIMSEFRVGTTRVL 326

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +  
Sbjct: 327 ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRD 386

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 387 IEQYYSTQIDEMPMNVADL 405


>gi|71421857|ref|XP_811932.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70876653|gb|EAN90081.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 631

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 130/359 (36%), Positives = 207/359 (57%), Gaps = 16/359 (4%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-------EKGRARVRMP 73
           Y KPTP+Q   IP+VL  HD+   AQTG+GKTA++++P+++ +        +G+     P
Sbjct: 151 YQKPTPVQKYGIPVVLCGHDLMACAQTGSGKTAAYLIPLVSSILSNATPNHQGQGSRSSP 210

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
             L++ PTREL+ Q+ +   K+     +   ++ GG     Q  +L RG  +L+ TPGR+
Sbjct: 211 AALVMAPTRELSIQIHEEGRKFTYRTGIRCVVVYGGADPRHQVHELSRGCGLLVATPGRL 270

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS------LVPFTRQTLLFSATM 187
            D F RG +  ++I  +V+DEADRMLDMGF P I+ I          P  RQTLL+SAT 
Sbjct: 271 WDVFTRGYVTFSSIRFMVLDEADRMLDMGFEPQIRMIVQGQESDMPPPGQRQTLLYSATF 330

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
             E+Q+++  FL     ++V    ST E I    V       K+  LL+ L ++Q+ +  
Sbjct: 331 PTEIQQLAREFLHRHYFLQVGRVGSTTENITQD-VRWVEDNDKREHLLRLLHENQNQLI- 388

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            ++F  +K++   L   L     +  +IHG+  QR R + L  FK  + Q++VA+D+A+R
Sbjct: 389 -LVFVEKKRDADYLERFLRNNRVACASIHGDRVQREREEALKMFKSASCQVLVATDVASR 447

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           GLDIPDV  V  +D+P+  ++Y+HRIGRTGRAG+ G+A +   +++   +D +  L+ +
Sbjct: 448 GLDIPDVSIVIQYDMPSNIDDYVHRIGRTGRAGKVGRAISFFNEKNRNIVDDLVPLLNE 506


>gi|298484971|ref|ZP_07003069.1| ATP-independent RNA helicase DbpA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160525|gb|EFI01548.1| ATP-independent RNA helicase DbpA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 473

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 218/373 (58%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 20  FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++  N+ V  L GG+ F  Q   LE 
Sbjct: 80  INP---RFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 137 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F+++P+ ++V    + ++ IE  F     +   + A+++ L   
Sbjct: 197 LFSATYPVGIKQLSSKFMRDPQTVKVEALHADSQ-IEQIFYEISPEQRLE-AVVKVLGHF 254

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 255 RPA--SCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 313 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 372

Query: 362 KLIEKKVDWLNGD 374
           +L +  ++W   D
Sbjct: 373 ELQKAPLNWQQYD 385


>gi|297850038|ref|XP_002892900.1| hypothetical protein ARALYDRAFT_471825 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338742|gb|EFH69159.1| hypothetical protein ARALYDRAFT_471825 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 487

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 145/418 (34%), Positives = 232/418 (55%), Gaps = 18/418 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LGL+   V    + G  KPTP+Q   +P +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 55  NFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILH 114

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    V     L++ PTRELA Q+A+ F+  G   NL  ++++GG+    Q + L  
Sbjct: 115 RLAEDPYGVF---ALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTRSLVS 171

Query: 122 GADVLICTPGRI---LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              ++I TPGRI   L++      + +  + LV+DEADR+LD+GF   ++ I   +P +R
Sbjct: 172 RPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSR 231

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATMT  LQ + E+        E      T +T+   F+    + +K+  L+  L
Sbjct: 232 QTLLFSATMTSNLQTLLEHSSNKAYFYEAYEGLKTVDTLTQQFIFE-DKDAKELYLVHIL 290

Query: 239 LQSQDT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            Q +D  +++ +IF +  +    L   L++      A+H    Q  R+  LS FK G I 
Sbjct: 291 SQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENVAMHSLNSQSMRLSALSKFKSGKIP 350

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLDIP V  V N+D+P    +Y+HR+GRT RAGR G A +++ + D+K I
Sbjct: 351 ILLATDVASRGLDIPTVDLVINYDIPRNPRDYVHRVGRTARAGRGGLAVSIITETDVKLI 410

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF-----DRRK 410
             IE+ + KK++  N  + +     + +++ + + A++   +     GF     DRRK
Sbjct: 411 HKIEEEVGKKMEPYNNKIIT-----DSLEVTKVSKAKRVAMMRMLDNGFEDKVKDRRK 463


>gi|195024659|ref|XP_001985916.1| GH21077 [Drosophila grimshawi]
 gi|193901916|gb|EDW00783.1| GH21077 [Drosophila grimshawi]
          Length = 790

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 141/395 (35%), Positives = 217/395 (54%), Gaps = 12/395 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP +  
Sbjct: 160 FYQMNLSRPLMRAIGVLGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTVER 219

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +      + R L+L PTREL AQV    ++  +  ++ V L IGG+  +AQ   L +
Sbjct: 220 LLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQ 279

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I +    TRQT
Sbjct: 280 NPDIVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQT 339

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM+++++ ++   L  P ++ VN     A  +   F+            +   L 
Sbjct: 340 MLFSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLI 399

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F   KK    L   L   G     +HGN+ Q+ R++ L  FKE  I +++
Sbjct: 400 CRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLI 459

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  I
Sbjct: 460 ATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDI 519

Query: 361 EKLIEKKV----------DWLNGDLSSLNPPLEKI 385
            K  E  V          D     L++L P ++ I
Sbjct: 520 IKNAESSVKNRIIPPEIIDKYRNKLTALEPEIQNI 554


>gi|225457847|ref|XP_002279081.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 778

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 135/403 (33%), Positives = 225/403 (55%), Gaps = 6/403 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLSP V  A+   GY  PTPIQ KT+PL+L   DV  +A+TG+GKTA+F++PML  
Sbjct: 29  FESLGLSPNVYRAIKRKGYRVPTPIQRKTMPLILSGCDVVAMARTGSGKTAAFLIPMLER 88

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++   +  + R LIL PTR+LA Q     ++  +  ++ ++LL+GG   E+Q ++L + 
Sbjct: 89  LKQHVPQTGV-RALILSPTRDLALQTLKFTKELARYTDVRISLLVGGDSMESQFEELAQN 147

Query: 123 ADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR++ H +    + +  +E +V DEAD +  MGF   +  I + +   RQTL
Sbjct: 148 PDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAEQLHKILAQLSDNRQTL 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L + ++  LQ+P+ + ++  +  +  ++  F  T     K  ALL  + + 
Sbjct: 208 LFSATLPSALAEFAKAGLQDPQLVRLDLDTKISPDLKVNFF-TLRHEEKLAALLYLIREQ 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  +IF + K +V  L     ++G      +G++DQ +R   +S F+     L++ 
Sbjct: 267 ISSDQQTLIFVSTKHHVEFLNVLFREEGIEASVCYGDMDQDARKIHISRFRSRKTMLLIV 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP + +V N+D P + + ++HR+GR  RAGR G AF+ V  ED+ ++  + 
Sbjct: 327 TDVAARGIDIPLLDNVVNWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMPYLLDLH 386

Query: 362 KLIEKKVDWLNGDLSSLNPP---LEKIDIAQHNHARKNNPIPQ 401
             + K +     +   L  P   + KID    N       +PQ
Sbjct: 387 LFLSKPIRAAPTEEEVLQDPDEVMSKIDQIVANGGTVYGRLPQ 429


>gi|257077167|ref|ZP_05571528.1| DEAD box protein [Ferroplasma acidarmanus fer1]
          Length = 430

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 136/388 (35%), Positives = 228/388 (58%), Gaps = 21/388 (5%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           + +PT IQ K IP+VL   DV   ++TG+GKTA+++LP+L  +EK + +    + +I+ P
Sbjct: 16  FTEPTEIQEKAIPVVLTGKDVIIRSKTGSGKTAAYLLPVLNSVEKLKGK--SVKAIIILP 73

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TRELA Q      + GK   +   ++ GG     Q ++L  G+D++I TPGRILD +N+ 
Sbjct: 74  TRELALQTHRVASRLGKISGIKSTIVYGGASIIRQVEELP-GSDIVIGTPGRILDLYNQK 132

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200
            L +++++ LV+DEAD MLDMGFI  I+ I S  P  RQT+L SAT+  E++ ++ +F+ 
Sbjct: 133 YLKLDHVKYLVLDEADLMLDMGFIDDIKKIISFTPEGRQTILLSATLPAEVKTIANHFMN 192

Query: 201 NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK--NV 258
           NP+ ++     +   +I+H +  T ++   K + L   + S ++ K  I+F   ++  ++
Sbjct: 193 NPEFVDAGGDEAIPSSIKHLY--TVSEKFDKFSTLMSYIHSYNSRK-AIVFVKTQRSGDL 249

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
           +NL   L + GF+   IHG + Q +R + +++F+     ++VA+++AARGLDIP++  + 
Sbjct: 250 LNLI--LSRSGFNNVLIHGGMKQHARERSIADFRHIDSGILVATNVAARGLDIPNITDII 307

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           NFD P+  E Y HR+GR+GR G+ G+A T+        I +I++    K++ +N DL + 
Sbjct: 308 NFDAPDSTETYAHRVGRSGRMGKDGRAMTIFDPSQKSLIQSIQRRNRIKMEKINIDLET- 366

Query: 379 NPPLEKID------IAQHNHARKNNPIP 400
               E  D      IAQ     +N P P
Sbjct: 367 ----EYTDINYGKLIAQFRDNEENAPEP 390


>gi|302409340|ref|XP_003002504.1| ATP-dependent RNA helicase DBP3 [Verticillium albo-atrum VaMs.102]
 gi|261358537|gb|EEY20965.1| ATP-dependent RNA helicase DBP3 [Verticillium albo-atrum VaMs.102]
          Length = 571

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 130/352 (36%), Positives = 196/352 (55%), Gaps = 16/352 (4%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
           A Y KPTPIQ  + P  L   D  G+A+TG+GKT +F LP++  + K + R    + +++
Sbjct: 194 AAYTKPTPIQAASWPFTLSGRDAIGVAETGSGKTMAFALPLVESISKMKKRC--IKAVVV 251

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA Q  +   +   +  L    + GG   + Q   L+RGAD+++ TPGR+ D  +
Sbjct: 252 SPTRELAMQTHEQTAQLAAHLGLKSVCVYGGASKDEQRALLQRGADIIVATPGRLKDFMS 311

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TRQTLLFSATMTDELQKVSE 196
            G + +++    V+DEADRMLD GF   I+ I   +P    RQTL+F+AT    ++ ++ 
Sbjct: 312 DGTVDLSHSRFAVLDEADRMLDKGFEDDIKAILGAMPAREDRQTLMFTATWPASVRLLAS 371

Query: 197 NFLQNPKRIEVN-----TPSSTAETIEHCFVATYAQY----SKKCALLQQLLQSQDTMKN 247
           +F+ +P +I +      T S + E   +  +    +      K+  LLQ L Q Q     
Sbjct: 372 SFMVDPVKITIGSGGKETASGSVELQANTRITQRVEVVDGRDKEQRLLQILRQYQAGQGR 431

Query: 248 G---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
               ++FC  KK    +   L+++G  VC IHG++ Q  R + L  FK G+  +MVA+D+
Sbjct: 432 HDRILVFCLYKKEATRVEGFLQQRGIHVCGIHGDLRQDQRTRSLEAFKSGSTSVMVATDV 491

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG+ G+A TL   +D  H
Sbjct: 492 AARGLDIPEVKLVVNVTFPLTIEDYVHRIGRTGRAGKTGEAITLFTVQDKAH 543


>gi|2500527|sp|Q61656|DDX5_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box RNA helicase DEAD1; Short=mDEAD1; AltName:
           Full=DEAD box protein 5; AltName: Full=RNA helicase p68
 gi|51263|emb|CAA46581.1| p68 RNA helicase [Mus musculus]
          Length = 614

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 14/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARHNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 154 VHINHHPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 209

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 270 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 329

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 330 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 388

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 389 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448

Query: 353 DIKHI-DAIEKLIE 365
           +IK + D I  L E
Sbjct: 449 NIKQVSDLISVLRE 462


>gi|194757571|ref|XP_001961038.1| GF13667 [Drosophila ananassae]
 gi|190622336|gb|EDV37860.1| GF13667 [Drosophila ananassae]
          Length = 782

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 141/395 (35%), Positives = 217/395 (54%), Gaps = 12/395 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP L  
Sbjct: 159 FYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLER 218

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +      + R L+L PTREL AQV    ++  +  ++ V L IGG+  +AQ   L +
Sbjct: 219 LLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQ 278

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I +    TRQT
Sbjct: 279 NPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQT 338

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM+++++ ++   L  P ++ VN     A  +   F+            +   L 
Sbjct: 339 MLFSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLI 398

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F   KK    L   L   G     +HGN+ Q+ R++ L  FKE  I +++
Sbjct: 399 CRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLI 458

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  I
Sbjct: 459 ATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDI 518

Query: 361 EKLIEKK----------VDWLNGDLSSLNPPLEKI 385
            K  E            ++     L+SL P ++ I
Sbjct: 519 IKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNI 553


>gi|296201832|ref|XP_002748195.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 2
           [Callithrix jacchus]
          Length = 603

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 14/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 83  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 142

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 143 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 198

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 199 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 258

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 259 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 318

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 319 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 377

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 378 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 437

Query: 353 DIKHI-DAIEKLIE 365
           +IK + D I  L E
Sbjct: 438 NIKQVSDLISVLRE 451


>gi|302142729|emb|CBI19932.3| unnamed protein product [Vitis vinifera]
          Length = 786

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 135/403 (33%), Positives = 225/403 (55%), Gaps = 6/403 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLSP V  A+   GY  PTPIQ KT+PL+L   DV  +A+TG+GKTA+F++PML  
Sbjct: 29  FESLGLSPNVYRAIKRKGYRVPTPIQRKTMPLILSGCDVVAMARTGSGKTAAFLIPMLER 88

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++   +  + R LIL PTR+LA Q     ++  +  ++ ++LL+GG   E+Q ++L + 
Sbjct: 89  LKQHVPQTGV-RALILSPTRDLALQTLKFTKELARYTDVRISLLVGGDSMESQFEELAQN 147

Query: 123 ADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR++ H +    + +  +E +V DEAD +  MGF   +  I + +   RQTL
Sbjct: 148 PDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAEQLHKILAQLSDNRQTL 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L + ++  LQ+P+ + ++  +  +  ++  F  T     K  ALL  + + 
Sbjct: 208 LFSATLPSALAEFAKAGLQDPQLVRLDLDTKISPDLKVNFF-TLRHEEKLAALLYLIREQ 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  +IF + K +V  L     ++G      +G++DQ +R   +S F+     L++ 
Sbjct: 267 ISSDQQTLIFVSTKHHVEFLNVLFREEGIEASVCYGDMDQDARKIHISRFRSRKTMLLIV 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP + +V N+D P + + ++HR+GR  RAGR G AF+ V  ED+ ++  + 
Sbjct: 327 TDVAARGIDIPLLDNVVNWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMPYLLDLH 386

Query: 362 KLIEKKVDWLNGDLSSLNPP---LEKIDIAQHNHARKNNPIPQ 401
             + K +     +   L  P   + KID    N       +PQ
Sbjct: 387 LFLSKPIRAAPTEEEVLQDPDEVMSKIDQIVANGGTVYGRLPQ 429


>gi|226021|prf||1406327A growth regulated nuclear 68 protein
          Length = 594

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 14/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 74  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 133

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 134 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 189

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 190 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 249

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 250 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 309

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 310 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 368

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 369 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 428

Query: 353 DIKHI-DAIEKLIE 365
           +IK + D I  L E
Sbjct: 429 NIKQVSDLISVLRE 442


>gi|90075448|dbj|BAE87404.1| unnamed protein product [Macaca fascicularis]
          Length = 566

 Score =  232 bits (592), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 14/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 154 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 209

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 270 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 329

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 330 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 388

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 389 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448

Query: 353 DIKHI-DAIEKLIE 365
           +IK + D I  L E
Sbjct: 449 NIKQVSDLISVLRE 462


>gi|289617759|emb|CBI61482.1| unnamed protein product [Sordaria macrospora]
          Length = 648

 Score =  232 bits (592), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 135/363 (37%), Positives = 202/363 (55%), Gaps = 21/363 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L
Sbjct: 219 LTFTNPPLDNHLISNIALARYNVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPIL 278

Query: 61  T--------------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
           +                  GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 279 SQSFHTGPSPIPASAAGAYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVV 338

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 339 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQ 398

Query: 167 IQNITSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 399 IRRIVEGEDMPKVDQRQTLMFSATFPRDIQILARDFLKDYIFLSVGRVGSTSENITQ--K 456

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             Y +   K ++L  +L +       +IF   K+   +L   L  Q F   +IHG+  QR
Sbjct: 457 VEYVEDVDKRSVLLDILHTHAGGLT-LIFVETKRMADSLSDFLINQNFPATSIHGDRTQR 515

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 516 ERERALEMFRNGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 575

Query: 343 GKA 345
           G A
Sbjct: 576 GIA 578


>gi|70989821|ref|XP_749760.1| ATP-dependent RNA helicase [Aspergillus fumigatus Af293]
 gi|74668891|sp|Q4WH83|DBP3_ASPFU RecName: Full=ATP-dependent RNA helicase dbp3
 gi|66847391|gb|EAL87722.1| ATP-dependent RNA helicase, putative [Aspergillus fumigatus Af293]
 gi|159129169|gb|EDP54283.1| ATP-dependent RNA helicase, putative [Aspergillus fumigatus A1163]
          Length = 503

 Score =  232 bits (592), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 137/365 (37%), Positives = 204/365 (55%), Gaps = 16/365 (4%)

Query: 1   MDFADLGLSPKVVCAVLD--AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           M F+ L   P     + D  + +  PTPIQ  T PL+    DV GIA+TG+GKT +F LP
Sbjct: 86  MSFSHL---PSSFSKIYDPLSSFSSPTPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLP 142

Query: 59  MLT-ILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +  IL+ G+ + +   P  +I+ PTRELA Q+ D   K+G + ++ V  + GG+  + Q
Sbjct: 143 CIKKILDSGKVKRKHARPAAVIISPTRELAMQIYDQLSKFGASVDIRVTCIYGGVKKDEQ 202

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L+  A +++ TPGR+ D  + G + +  ++ LV+DEADRMLD GF   I++I    P
Sbjct: 203 REALKTAA-IVVATPGRLKDLKDDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIIRSTP 261

Query: 176 -FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST---AETIEHCFVATYAQYSKK 231
             TRQT++F+AT    ++ ++ +F+ +   + +    S    A T     V       K+
Sbjct: 262 DSTRQTVMFTATWPPSVRDLAASFMTSAVTVTIGGDPSADPRANTRIKQVVEVVKPQEKE 321

Query: 232 CALLQQLLQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
             L+Q L +SQ     G   ++FC  KK  V +   L  + F V  IHG+++Q  R K L
Sbjct: 322 ARLVQLLSRSQRGAAVGDKVLVFCLYKKEAVRVERLLRSKNFKVAGIHGDLNQHERFKSL 381

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             FK G+  ++VA+D+AARGLDIP V  V N   P   E+Y+HRIGRTGRAG  G A TL
Sbjct: 382 EAFKTGSATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGRAGADGHAITL 441

Query: 349 VAKED 353
             + D
Sbjct: 442 FTEAD 446


>gi|270010045|gb|EFA06493.1| hypothetical protein TcasGA2_TC009390 [Tribolium castaneum]
          Length = 691

 Score =  232 bits (592), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 136/363 (37%), Positives = 206/363 (56%), Gaps = 3/363 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + LS  ++ A+ D  +V PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP L  
Sbjct: 139 FYQMNLSRPLLKAISDMKFVHPTPIQASTIPVALMGRDICGCAATGTGKTAAYMLPTLER 198

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +      + R L+L PTREL  QV    ++  +  ++ + L +GG+  +AQ   L +
Sbjct: 199 LLYRPVGGPPVTRVLVLVPTRELGVQVYQVTKQLAQFSDIQIGLAVGGLDLKAQETILRK 258

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++DH        +++IE+L++DEADRMLD  F   ++ I      TRQT
Sbjct: 259 NPDIVIATPGRLIDHLKSTPTFGLDSIEVLILDEADRMLDEYFAEQMKEIIKQCARTRQT 318

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+E++ ++   L  P R+ V++    A  +   FV            +   L 
Sbjct: 319 MLFSATMTEEVESLAAVSLNKPVRLFVDSNREVAFGLRQEFVRIRQDKEGDREAILAALV 378

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   ++ ++F   KK    L   L   G  V  +HGN+ Q  R+  L  FKE  I ++V
Sbjct: 379 CRTFREHCMVFVQTKKQAHRLHILLGLLGLKVGELHGNLTQPQRLDALQKFKETQIDVLV 438

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI-DA 359
           A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K + D 
Sbjct: 439 ATDVAARGLDIQGVQTVINFVMPATVEHYIHRVGRTARAGRAGVSVSLAGEQERKIVKDV 498

Query: 360 IEK 362
           ++K
Sbjct: 499 VKK 501


>gi|315304037|ref|ZP_07874464.1| ATP-dependent RNA helicase DbpA [Listeria ivanovii FSL F6-596]
 gi|313627596|gb|EFR96302.1| ATP-dependent RNA helicase DbpA [Listeria ivanovii FSL F6-596]
          Length = 474

 Score =  232 bits (592), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 128/350 (36%), Positives = 196/350 (56%), Gaps = 17/350 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
           D  +L LS ++  A+ + GY   TP+Q + IP+ L   D+   +QTG+GKTA+F +P+  
Sbjct: 4   DMNNLKLSEEIKRAINELGYKDATPVQKEVIPVALTGKDIVAKSQTGSGKTAAFAIPIAE 63

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I E+ +     P+ LI+ PTREL  QV       G+   +  A + G  PF  Q  +L
Sbjct: 64  QVIWEENK-----PQALIIVPTRELGVQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLEL 118

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   +++ TPGR+LDH  +G L ++ +  LV+DE D ML MGFI  +++I   +P  RQ
Sbjct: 119 SQKNHIVVGTPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLSMGFIDQVEDILQFLPKKRQ 178

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSATM +E+  + + +  +P  IE+   +     I H  +    Q   K   LQ +L
Sbjct: 179 NLFFSATMPEEMHDLIKRYQNDPVVIEM--AAEKTNPITHIEM----QTENKEKTLQDVL 232

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++   + IIFCN K  V  L   L+    +   IHG + Q  R + + +FK G  + +
Sbjct: 233 ITENP-DSAIIFCNTKNQVDELSDLLQ---VNAAKIHGGLRQEERFRAMDDFKSGKSRFL 288

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +A+D+A RG+D+ +V  V N+D+P   ENY+HRIGRTGRAG  GKA + V
Sbjct: 289 IATDVAGRGIDVENVTLVINYDLPIEKENYVHRIGRTGRAGNSGKAISFV 338


>gi|194387478|dbj|BAG60103.1| unnamed protein product [Homo sapiens]
          Length = 603

 Score =  232 bits (592), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 14/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 83  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 142

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 143 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 198

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 199 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 258

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 259 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 318

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 319 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 377

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 378 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 437

Query: 353 DIKHI-DAIEKLIE 365
           +IK + D I  L E
Sbjct: 438 NIKQVSDLISVLRE 451


>gi|154315049|ref|XP_001556848.1| hypothetical protein BC1G_04866 [Botryotinia fuckeliana B05.10]
 gi|160419161|sp|A6RW79|PRP5_BOTFB RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|150848404|gb|EDN23597.1| hypothetical protein BC1G_04866 [Botryotinia fuckeliana B05.10]
          Length = 1151

 Score =  232 bits (592), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 207/371 (55%), Gaps = 8/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  K +  +   GY +PT IQ++ IP ++   DV G+A+TG+GKT +F+LPM   
Sbjct: 556 WSQCGLDVKSLDVITKLGYERPTSIQMQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRH 615

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R       P  LI+ PTRELA Q+    + + K   L      GG   + Q   L+
Sbjct: 616 IRDQRPLKGSDGPIGLIMTPTRELATQIHKECKPFLKAMGLRAVCAYGGAIIKDQIADLK 675

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR+++    N G++  +  +  +V+DEADRM DMGF P +  + + +   
Sbjct: 676 RGAEIIVCTPGRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNIRPN 735

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSATM   +  +++  LQ+P  I V   S  A  I    V    +  K   LL+ 
Sbjct: 736 RQTILFSATMPRIMDALAKKTLQSPVEIVVGGRSVVAPEITQ-IVEVREEKEKFHRLLEL 794

Query: 238 L--LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L  L + D     +IF ++++   +L   L ++G+   +IHG  DQ  R   + +FK G 
Sbjct: 795 LGELYNTDEDARTLIFVDRQEKADDLLKDLMRKGYPCMSIHGGKDQVDRDSTIDDFKAGV 854

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + +M+A+ +AARGLD+  +  V NFD PN  E+Y+HR GRTGRAG  G A T + +E  +
Sbjct: 855 VPIMIATSVAARGLDVKQLKLVVNFDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQEQ 914

Query: 356 HIDAIEKLIEK 366
           +   I K +E+
Sbjct: 915 YSVGIAKALEQ 925


>gi|150863861|ref|XP_001382482.2| Dead-Box Protein 8, ATP-dependent helicase involved in rRNA
           processing [Scheffersomyces stipitis CBS 6054]
 gi|158514820|sp|A3LP87|DBP8_PICST RecName: Full=ATP-dependent RNA helicase DBP8
 gi|149385117|gb|ABN64453.2| Dead-Box Protein 8, ATP-dependent helicase involved in rRNA
           processing [Scheffersomyces stipitis CBS 6054]
          Length = 445

 Score =  232 bits (592), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 143/389 (36%), Positives = 220/389 (56%), Gaps = 26/389 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLG+S  +  A+       PT IQ   IP +L  HD  G A+TG+GKT +F  PML
Sbjct: 1   MSFEDLGVSRWLSEALAAMKIHTPTAIQSGCIPKILSGHDCIGGAKTGSGKTIAFAAPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T   +    +     L+L PTRELA Q+A+ F   G + N+ +++++GG  F  Q  +L+
Sbjct: 61  TQWSEDPFGIF---GLVLTPTRELALQIAEQFAALGASMNIKISVVVGGEDFVKQTLELQ 117

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNN---IEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +    +I TPGR+ DH  N G+  ++    I+ LV+DEADR+L   F   ++   S++P 
Sbjct: 118 KKPHFVIATPGRLADHILNSGEETISGLRRIKYLVLDEADRLLSNSFGGDLERCFSVLPP 177

Query: 177 T--RQTLLFSATMTDELQKVSEN---------FLQNPKRI-EVNTPSSTAETIEHCFVAT 224
           +  RQT LF+AT+TD ++ + E          FL   + + +V  PS+   +I++ FV +
Sbjct: 178 SEKRQTCLFTATVTDAVRALKEKPPAQGKPPVFLHEVETVDQVAIPSTL--SIKYVFVPS 235

Query: 225 YAQYSKKCALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
           Y     K A L  +L+  Q      +IF N+      L  +L K  F V ++H  + Q  
Sbjct: 236 YV----KEAYLNSILRLPQYEKSTAVIFVNRTTTAEVLRRTLRKLEFRVASLHSEMPQSE 291

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   +  FK G  ++++A+D+A+RGLDIP V  V NFD+P   +++IHR+GRT RAGR G
Sbjct: 292 RTNSVQRFKAGAARILIATDVASRGLDIPSVELVVNFDIPADPDDFIHRVGRTARAGRSG 351

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
            A T++A++DI  I +IE+ I KK++ L 
Sbjct: 352 DAVTIIAEKDIDRIASIEERINKKMELLE 380


>gi|326929996|ref|XP_003211139.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
           DDX54-like [Meleagris gallopavo]
          Length = 831

 Score =  232 bits (592), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 135/364 (37%), Positives = 207/364 (56%), Gaps = 21/364 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   V+  GY  PTPIQ KTIP++L+  DV  +A+TG+GKTA F+LPM   
Sbjct: 62  FQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVILRGRDVVAMARTGSGKTACFLLPMFE- 120

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 R++ P     R LIL PTRELA Q     ++ GK   L  AL++GG   E Q  
Sbjct: 121 ------RLKAPSPSGARALILSPTRELALQTLKFTKELGKFTGLKTALVLGGDKMEDQFA 174

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L    D++I TPGR++       L ++++E +V DEADR+ +MGF   +Q I + +P +
Sbjct: 175 ALHENPDIIIATPGRLVHVAVEMNLKLHSMEYVVFDEADRLFEMGFAEQLQEILARLPGS 234

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            QT+LFSAT+   L + +   L  P  I ++  S  +E ++  F   + +   K A+L  
Sbjct: 235 HQTVLFSATLPKLLVEFARAGLTEPMLIRLDVESKLSEQLKLAFF--HVRGDDKPAVLLH 292

Query: 238 LLQS----QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL+S    QD     ++F   K +   L   L  QG     I+ ++DQ +R   ++ F  
Sbjct: 293 LLRSVVKPQDQT---VVFVATKHHTEYLKELLTSQGICCTHIYSSLDQTARKINIAKFAH 349

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G  Q+++ +D+AARGLDIP + +V N+  P +++ ++HR+GR  RAGR G A++LVA ++
Sbjct: 350 GKCQVLLVTDVAARGLDIPMLDNVINYSFPAKSKLFLHRVGRVARAGRSGTAYSLVAPDE 409

Query: 354 IKHI 357
           + +I
Sbjct: 410 MPYI 413


>gi|299747858|ref|XP_001837294.2| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Coprinopsis
           cinerea okayama7#130]
 gi|298407711|gb|EAU84911.2| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Coprinopsis
           cinerea okayama7#130]
          Length = 1081

 Score =  232 bits (592), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 134/391 (34%), Positives = 216/391 (55%), Gaps = 16/391 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL    +  +    Y  PT IQ + IP ++   DV G+A+TG+GKT +F+LP+   
Sbjct: 423 WSHFGLPASCIEVIKRLNYTAPTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLLPLFRH 482

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++  R   +M  P  L++ PTRELA Q+  + + + K   L      GG P + Q  +L+
Sbjct: 483 IKDQRPLEQMEGPMALVMTPTRELAVQIHKDCKPFLKVLGLRAVCAYGGSPIKDQIAELK 542

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +GA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I + +   
Sbjct: 543 KGAEIIVCTPGRMIDLLTANSGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIINNIRPD 602

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT   ++  ++   L+ P  I V   S  A  IE   V   A+ +K   LL+ 
Sbjct: 603 RQTVLFSATFPKQMDSLARKILRKPLEITVGGRSVVAAEIEQ-IVEVRAEDTKFNRLLEI 661

Query: 238 LLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L Q  + D     +IF ++++   NL   L ++G+   ++HG  DQ  R   +++FK G 
Sbjct: 662 LGQMYNDDPECRTLIFVDRQEAADNLLRDLMRKGYLCMSLHGGKDQVDRDSTIADFKAGV 721

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G   T +  E  +
Sbjct: 722 VPIVIATSVAARGLDVKQLKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCVTFITPEQER 781

Query: 356 H-------IDAIEKLIEKKV-DWLNGDLSSL 378
           +       + A E  I K++ D  NG L  +
Sbjct: 782 YSVDIYRALKASEATIPKELEDLANGFLEKV 812


>gi|224085049|ref|XP_002307470.1| predicted protein [Populus trichocarpa]
 gi|222856919|gb|EEE94466.1| predicted protein [Populus trichocarpa]
          Length = 510

 Score =  232 bits (592), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 137/403 (33%), Positives = 223/403 (55%), Gaps = 6/403 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LSP V   +   GY  PTPIQ KT+PL+L   DV  +A+TG+GKTA+F+LPML  
Sbjct: 27  FESLNLSPNVFRGIKRKGYRVPTPIQRKTMPLILAGIDVVAMARTGSGKTAAFLLPMLEK 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++   +  + R LIL PTR+LA Q     ++ G+  +L ++LL+GG   E+Q + L + 
Sbjct: 87  LKQHLPQSGV-RALILSPTRDLALQTLKFTKELGRFTDLRISLLVGGDRMESQFEDLSQN 145

Query: 123 ADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR++ H +    + +  +E +V DEAD +  MGF   +  I + +   RQTL
Sbjct: 146 PDIIIATPGRLMHHLSEIDDMSLKTVEYVVFDEADSLFGMGFAEQLHKILTQLSENRQTL 205

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L + ++  L++P+ + ++  +  +  ++  F  T  Q  K  AL+  +   
Sbjct: 206 LFSATLPSALAEFAKAGLRDPQLVRLDVDTKISPDLKTVFF-TLRQEEKYAALIYLIRDH 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T +  +IF + K +V  L     + G      +G++DQ +R   +S F+     L++ 
Sbjct: 265 ISTDQQTLIFVSTKHHVEFLNVLFREDGIEPSVCYGDMDQDARKIHVSRFRARKTMLLIV 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP + +V N+D P + + ++HR+GR  RAGR G AF+ V  ED+ ++  + 
Sbjct: 325 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRVARAGRTGTAFSFVTSEDMPYLLDLH 384

Query: 362 KLIEKKVDWLNGD---LSSLNPPLEKIDIAQHNHARKNNPIPQ 401
             + K V     +   L  ++  + KID A  N        PQ
Sbjct: 385 LFLSKPVKAAPTEEEVLQDIDGVMNKIDQAFANGETVYGRFPQ 427


>gi|303316314|ref|XP_003068159.1| ATP-dependent RNA helicase DBP3, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240107840|gb|EER26014.1| ATP-dependent RNA helicase DBP3, putative [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 512

 Score =  232 bits (592), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 134/341 (39%), Positives = 194/341 (56%), Gaps = 9/341 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-PRTLIL 78
           +  PTPIQ  + PL     D+ G+A+TG+GKT +F LP L  +LE   +     P  LI+
Sbjct: 116 FSSPTPIQAVSWPLAFAGRDLIGVAETGSGKTLAFGLPCLRRVLELNNSETSCKPCALII 175

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA Q+ D   ++    ++ +A + GG P + Q +++ R A V+I TPGR+ D   
Sbjct: 176 TPTRELAVQIYDQLLRFSSAVDVGIACIYGGSPKDHQRREI-RNASVVIATPGRLKDFQA 234

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQTLLFSATMTDELQKVSE 196
              + ++ ++ LV+DEADRMLD GF   IQ+I   +P T  RQT++F+AT    ++ ++ 
Sbjct: 235 DQTINLSGVKYLVLDEADRMLDKGFEQDIQDIVKGIPSTQKRQTIMFTATWPIGVRNLAA 294

Query: 197 NFLQNPKRIEVNTPSST-AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG---IIFC 252
           +F +NP  + +   S   A       V     Y K   LL+ L + QD  KN    ++FC
Sbjct: 295 SFTKNPVTVTIGDSSDIRANKRIKQIVEVLQPYEKDSRLLELLRRYQDGAKNNHRILVFC 354

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             KK  + +   +  +GF V  IHG++ Q  R + L  FK G+I L+VA+D+AARGLDIP
Sbjct: 355 LYKKEAMRVERFIGSKGFKVAGIHGDMSQTERFRSLEAFKSGSISLLVATDVAARGLDIP 414

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            V  V N   P   E+Y+HRIGRTGRAG  G A TL  + D
Sbjct: 415 AVKLVLNVTFPLTIEDYVHRIGRTGRAGAEGLAITLFTERD 455


>gi|196002119|ref|XP_002110927.1| hypothetical protein TRIADDRAFT_21982 [Trichoplax adhaerens]
 gi|190586878|gb|EDV26931.1| hypothetical protein TRIADDRAFT_21982 [Trichoplax adhaerens]
          Length = 435

 Score =  232 bits (592), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 147/386 (38%), Positives = 220/386 (56%), Gaps = 23/386 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  +V      G  K T +Q K IP +LQ  +  G A+TG+GKTA+F LP+L  
Sbjct: 7   FADLGLNTWLVKQCRAIGLAKATAVQEKCIPPILQGQNCIGCAKTGSGKTAAFALPILQN 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K    +     LIL PTRELA Q+AD F  +GK   +  A++IGG+   +Q+  L + 
Sbjct: 67  LAKEPFGIY---ALILTPTRELAFQLADQFRAFGKPIGMRDAIVIGGLDIISQSIALSKK 123

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             ++I TPGR+ D   N  K+  + I+ LV+DEADR+L+  F P +  I  ++P  RQTL
Sbjct: 124 PHIVIATPGRLADLIDNDSKVHFSKIKFLVLDEADRLLEASFGPDLGKIFEILPEDRQTL 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTP---SSTAETIEHCFVATYAQYSKKCALLQQL 238
           LFSATMT+ + +  E        I  +T    S+T E ++  ++   A   K C  +  +
Sbjct: 184 LFSATMTNAMARAQEVAASKKPFIYEDTDMKISATVEQLDQHYLLMPA-VVKDCYFVYLI 242

Query: 239 LQ-----SQDTMKNGIIFCN-----QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            Q      ++   N +IF +      +++   L   L +  FS  A+H  + QR R+  L
Sbjct: 243 KQLSLELEKNPRWNMMIFTSTYNFSNRRSCQILAIMLSRLEFSCAALHSLMPQRQRLGSL 302

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           + FK G ++++VA+D+A+RGLDIP V  V N++VP  A++YIHR+GRT RAG+ G A TL
Sbjct: 303 ARFKNGLLKILVATDVASRGLDIPTVEAVVNYNVPLSADDYIHRVGRTARAGKKGMAVTL 362

Query: 349 VAKEDIKHIDAIE-----KLIEKKVD 369
           + + D+  I  IE     KL++ +VD
Sbjct: 363 MTQYDVNRIHNIETTTNVKLLKYEVD 388


>gi|255078748|ref|XP_002502954.1| predicted protein [Micromonas sp. RCC299]
 gi|226518220|gb|ACO64212.1| predicted protein [Micromonas sp. RCC299]
          Length = 435

 Score =  232 bits (592), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 132/375 (35%), Positives = 195/375 (52%), Gaps = 16/375 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +  L    V  +   G+  PTP+Q +T P  L   DV  IA+TG+GKT +F+LP +  
Sbjct: 50  FEESSLPAYCVDELAKCGFPSPTPVQSQTWPAALSGRDVISIAETGSGKTLAFLLPAVVH 109

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  LIL PTRELA Q+ +    +GK+  +  A + GG P  AQ 
Sbjct: 110 INAQPYLERGDG----PIVLILAPTRELAVQIQEQAATFGKSSKIKSACIYGGAPRNAQI 165

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G ++ + TPGR+LD  N     +  +   V+DEADRMLD+GF P I+ +  L   
Sbjct: 166 AALREGVELCVATPGRLLDLLNAKATNLRRVTYFVLDEADRMLDLGFEPQIRRVERLTRP 225

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLF+AT   E+   + +F  +   + +   +  A       V    +  K   L+ 
Sbjct: 226 DRQTLLFTATWPAEVAAAAGDFTNDVVTVRIGGEALRASDNVSQIVEVVDEDDKHAKLVG 285

Query: 237 QLLQSQDTMKNG------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            L ++      G      I+F + K  V +    L  +GF   +IHG+  Q  R  +L  
Sbjct: 286 WLERALGEADAGGWTPRVIVFLSSKARVDSATRRLRHEGFPALSIHGDKTQEEREWVLGE 345

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   +M+A+D+AARGLD+ DV  V N+D P + E+Y+HRIGRTGRAG  G A ++ A
Sbjct: 346 FRAGKSPVMLATDVAARGLDVKDVSLVINYDFPAKMEDYVHRIGRTGRAGAKGAARSMFA 405

Query: 351 KEDIKHIDAIEKLIE 365
             D +H  ++  L++
Sbjct: 406 AGDARHARSLCGLLQ 420


>gi|50550293|ref|XP_502619.1| YALI0D09449p [Yarrowia lipolytica]
 gi|74659944|sp|Q6C9P3|DBP3_YARLI RecName: Full=ATP-dependent RNA helicase DBP3
 gi|49648487|emb|CAG80807.1| YALI0D09449p [Yarrowia lipolytica]
          Length = 532

 Score =  232 bits (592), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 136/362 (37%), Positives = 210/362 (58%), Gaps = 13/362 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+ + L P++   +    + +PTPIQ  + P +L   D+ G+A+TG+GKT +F +P L
Sbjct: 126 MEFSHVTLDPRITKVL--TKFPRPTPIQAVSWPYLLAGKDMVGVAETGSGKTFTFAVPAL 183

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
              +   G   VR+   L++ PTRELA Q+ DN ++      L    + GG+P E Q   
Sbjct: 184 EHVLSTSGGKGVRV---LVVSPTRELAMQIYDNIKELCDVVGLHAVCVYGGVPKEQQRSD 240

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT-SLVPFT 177
           L+R A  +I TPGR+ D  + G   ++ +  LV+DEADRML+ GF   I+ I  S  P  
Sbjct: 241 LKR-ASFVIATPGRLCDLIDEGSCDLSKVSYLVLDEADRMLEKGFEEDIKKIIGSTRPTG 299

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYSKKCALL 235
           RQT++FSAT   E++K++E F++ P ++ +      A  + I    V      +K+  LL
Sbjct: 300 RQTVMFSATWPPEVRKLAEGFMKTPTKVMIGERDELAANKRITQS-VEVLDPRAKEGRLL 358

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L Q  +     +IF   KK    + ++L ++G+ V AIHG++ Q+ R K L  FK+G 
Sbjct: 359 DLLRQYANDDFKILIFALYKKEATRVENTLTRRGYGVAAIHGDLSQQQRTKALDEFKKGE 418

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +++A+D+AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG+ G+A TL  + + K
Sbjct: 419 KNILLATDVAARGLDIPNVKLVINLTFPLTVEDYVHRIGRTGRAGKTGQAITLFTEHE-K 477

Query: 356 HI 357
           H+
Sbjct: 478 HL 479


>gi|169600899|ref|XP_001793872.1| hypothetical protein SNOG_03302 [Phaeosphaeria nodorum SN15]
 gi|118575175|sp|Q0UY62|DBP3_PHANO RecName: Full=ATP-dependent RNA helicase DBP3
 gi|111068913|gb|EAT90033.1| hypothetical protein SNOG_03302 [Phaeosphaeria nodorum SN15]
          Length = 592

 Score =  232 bits (592), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 134/343 (39%), Positives = 195/343 (56%), Gaps = 10/343 (2%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEKGRARVRMPRTLI 77
           AG+  PTPIQ  T P +L   D+ G+A+TG+GKT +F +P +  IL   + + +  + +I
Sbjct: 196 AGFTAPTPIQAATWPFLLSGRDMVGVAETGSGKTLAFGVPCVRAILSLPKDKRKGIKAVI 255

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           + PTRELA Q+ D          L+V  + GG+P + Q     R A +++ TPGR+ D  
Sbjct: 256 VSPTRELAVQIYDQLVALAHPAGLSVVCVYGGVPKDPQVAAC-RKAHIVVATPGRLNDLI 314

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
             G   ++N + +V+DEADRMLD GF   I+ I S  P  RQTL+F+AT    ++ ++  
Sbjct: 315 GDGSADLSNADYVVLDEADRMLDKGFEEPIRQIISQTPKKRQTLMFTATWPPSVRDLAST 374

Query: 198 FLQNPKRIEVNTPSST---AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG----II 250
           F+ +P RI +    S    A       V     ++K+  LLQ L Q Q + KN     ++
Sbjct: 375 FMVSPVRITIGDNQSGELRANVRIKQLVEVLDPHAKEQRLLQLLKQYQ-SGKNKDDRILV 433

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           FC  KK  + + + +  +GF V  IHG++ Q  R   L+ FKEG + L+VA+D+AARGLD
Sbjct: 434 FCLYKKEAMRIENFIRMKGFRVGGIHGDLSQEKRSASLAAFKEGQVPLLVATDVAARGLD 493

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           IP V  V N   P  AE+Y+HRIGRTGRAG+ G A T   + D
Sbjct: 494 IPAVKLVINVTFPLTAEDYVHRIGRTGRAGKEGLAITFFTEHD 536


>gi|297842471|ref|XP_002889117.1| hypothetical protein ARALYDRAFT_316620 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334958|gb|EFH65376.1| hypothetical protein ARALYDRAFT_316620 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 834

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 214/369 (57%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P V  A+   GY  PTPIQ KT+PL+L   DV  +A+TG+GKTA+F++PML  
Sbjct: 30  FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++   +  + R LIL PTR+LA Q     ++ GK  +L V+LL+GG   E Q ++L +G
Sbjct: 90  LKQHVPQGGV-RALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKG 148

Query: 123 ADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR++   +    + +  +E +V DEAD +  MGF   +  I + +   RQTL
Sbjct: 149 PDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTL 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L + ++  L+ P+ + ++  +  +  +   F+    +  K  ALL  + + 
Sbjct: 209 LFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLRLSFLTVRPE-EKYAALLYLVREH 267

Query: 242 QDTMKNGIIFCNQKKNV--VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             + +  +IF + K +V  VN    LE    SVC  +G++DQ +R   +S F+     L+
Sbjct: 268 ISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVC--YGDMDQDARKIHVSRFRARKTMLL 325

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+AARG+DIP + +V N+D P R + ++HR+GR  RAGR G A++ V  ED+ ++  
Sbjct: 326 IVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGSAYSFVTPEDVPYMLD 385

Query: 360 IEKLIEKKV 368
           +   + K V
Sbjct: 386 LHLFLSKPV 394


>gi|255956777|ref|XP_002569141.1| Pc21g21690 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590852|emb|CAP97066.1| Pc21g21690 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 913

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 136/393 (34%), Positives = 211/393 (53%), Gaps = 40/393 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  ++ A+   G+  PTPIQ KTIP+++   DV G+A+TG+GKTASFV+PM+  
Sbjct: 87  FQAMGLSMTLLKAITRKGFSVPTPIQRKTIPVIMDDKDVVGMARTGSGKTASFVIPMIEK 146

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  +     R LI+ P+RELA Q     ++ GK  NLT  LLIGG   E Q   +   
Sbjct: 147 L-KSHSTTFGARALIMSPSRELALQTMKVVKEMGKGTNLTSVLLIGGDSLEDQFGMMASN 205

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       + +++I+ +V DEADR+ +MGF   +  I   +P  RQTLL
Sbjct: 206 PDIIIATPGRFLHLKVEMDMDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPTNRQTLL 265

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
           FSAT+   L + +   LQ P  I ++T +  +  +++ F A  +   K+ ALL  L    
Sbjct: 266 FSATLPKSLVEFARAGLQEPSLIRLDTENKVSPDLQNAFFAIKSS-DKEGALLHILHDII 324

Query: 239 ----------------------------------LQSQDTMKNGIIFCNQKKNVVNLCHS 264
                                              +   T  + I+F   K +V  L   
Sbjct: 325 KMPTGETDIGVRLRQEAENPSRKRKRSDVRLPSGFKESPTKHSTIVFAATKHHVDYLYSL 384

Query: 265 LEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPN 324
           L + GF+    +G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D P+
Sbjct: 385 LVEAGFATSYAYGSLDQTARNHHVQNFRSGISNILVVTDVAARGIDIPVLANVINYDFPS 444

Query: 325 RAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           + + +IHR+GRT RAG+ G +++LV  +D  ++
Sbjct: 445 QPKIFIHRVGRTARAGQKGWSYSLVRDKDAPYL 477


>gi|330838649|ref|YP_004413229.1| DEAD/DEAH box helicase domain protein [Selenomonas sputigena ATCC
           35185]
 gi|329746413|gb|AEB99769.1| DEAD/DEAH box helicase domain protein [Selenomonas sputigena ATCC
           35185]
          Length = 446

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 206/370 (55%), Gaps = 10/370 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F++L     +V A+   G  + T +Q + IP V    D    AQTGTGKT +F+LP+L
Sbjct: 1   MNFSELHCPEVLVDALARQGIREATLVQEQAIPAVRSGRDAIVQAQTGTGKTLAFLLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + KG ARV   + L++ PTRELA Q A   +       +  AL+ GG   E Q  KL 
Sbjct: 61  ERI-KGNARV--AQALVVSPTRELAMQTARVAKTLADAVGIRTALVYGGQDIERQKDKLR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++I TPGR+LDH  R  + ++ +  +V+DEAD ++ +GF+  ++ +   +    Q 
Sbjct: 118 QKPQLIIATPGRLLDHLRRHSVELSQVNKIVLDEADELMRLGFVEDVETMLEALAGDHQL 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQYSKKCALLQQL 238
           +LFSATM + ++ ++  +++ P+ I V     T   IE   V T    +  K C LL + 
Sbjct: 178 MLFSATMPERIRALTRRYMKEPREITVQPECVTLANIEQVIVDTREDTKLDKLCELLNKY 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q  +   ++FC+ K+ V ++   L  +G+ V  +HG++ Q  R  ++  F+E  +Q+
Sbjct: 238 ---QPYL--AMVFCHTKQKVAHVTLELAGRGYLVDELHGDLTQTQRNLVMRRFREAKLQI 292

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V +D+AARGLDI  V HVFN+D+P   E YIHRIGRTGRAG  G A T V       + 
Sbjct: 293 LVVTDIAARGLDIEGVTHVFNYDLPQDTEWYIHRIGRTGRAGAKGLAVTFVNAHQYDQLR 352

Query: 359 AIEKLIEKKV 368
            IE  I+ ++
Sbjct: 353 RIEAGIKARL 362


>gi|300724118|ref|YP_003713435.1| ATP-dependent RNA helicase [Xenorhabdus nematophila ATCC 19061]
 gi|297630652|emb|CBJ91317.1| ATP-dependent RNA helicase [Xenorhabdus nematophila ATCC 19061]
          Length = 446

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 133/354 (37%), Positives = 196/354 (55%), Gaps = 4/354 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++  L   ++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+++LP + 
Sbjct: 5   NFSEFELDESLLDALNDKGYERPTAIQAAAIPAAMDGRDVLGSAPTGTGKTAAYLLPAIQ 64

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVA+  ++   + +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVAEQAKELAAHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   ++ I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFANDVETIAGETRWRKQT 184

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+  E ++  +E  L +P  I+   PS         F         K ALL  LL
Sbjct: 185 LLFSATLEGESIRDFAERLLTDPVEIDAE-PSRRERKKIQQFYYRADTLEHKMALLCHLL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q  D  K+ I+F  +++ V  +   L + G     + G + Q  R   +    +G + ++
Sbjct: 244 QKSDVTKS-IVFVRKRERVREVADWLSQAGIQAAFLEGEMVQAKRTDAVKRLNDGKVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+A+RGLDI DV HVFNFD+P  A+ Y+HRIGRT RAGR G A  LV   D
Sbjct: 303 VATDVASRGLDIEDVSHVFNFDLPRTADVYLHRIGRTARAGRKGTAIALVESHD 356


>gi|126308848|ref|XP_001379329.1| PREDICTED: similar to DDX5 protein [Monodelphis domestica]
          Length = 865

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 209/386 (54%), Gaps = 13/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 345 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 404

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 405 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGP 460

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 461 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 520

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 521 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 580

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 581 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 639

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 640 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 699

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           +IK +  +  ++ +    +N  L  L
Sbjct: 700 NIKQVSDLISVLREANQAINPKLLQL 725


>gi|26991630|ref|NP_747055.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida KT2440]
 gi|24986724|gb|AAN70519.1|AE016694_2 ATP-dependent RNA helicase DbpA [Pseudomonas putida KT2440]
          Length = 461

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 214/369 (57%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L LS  ++  +   GY   TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 8   FATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNP 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +     R    + L+L PTRELA QVA    +  +   N+ +  L GG+    Q   LE 
Sbjct: 68  INP---RYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEH 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H ++G L+++ +  LV+DEADRMLDMGF   I +I    P  RQTL
Sbjct: 125 GAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++ +F++NP++++V +   T   IE  F+    Q  ++   + ++L  
Sbjct: 185 LFSATYPAGIKQLAADFMRNPQQVKVES-LHTDNQIEQRFIEIDPQ--QRLEAVTRVL-G 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ + FC  K+   ++   L  +G    A+HG+++QR R ++L+ F   +  ++VA
Sbjct: 241 HYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   AE ++HR+GRTGRAG  G A +LVA  +     AIE
Sbjct: 301 TDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIE 360

Query: 362 KLIEKKVDW 370
            L    + W
Sbjct: 361 ALQNSPLRW 369


>gi|309360868|emb|CAP30554.2| hypothetical protein CBG_11408 [Caenorhabditis briggsae AF16]
          Length = 559

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 129/343 (37%), Positives = 193/343 (56%), Gaps = 5/343 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG--R 67
           P  V  +L   + KPT IQ  + P+ +   D+  IA+TG+GKT +F+LP L  + K   R
Sbjct: 138 PGQVHELLYGKFQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQPHR 197

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
            R   P  L+L PTRELA QV +    +  +  L +  L GG     Q + LERG D+ +
Sbjct: 198 QRGEGPSVLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLERGVDIAV 257

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+LD  + G   M     LV+DEADRMLDMGF P I+ I   +   RQTL+FSAT 
Sbjct: 258 ATPGRLLDFLDNGTTNMKRCSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMFSATW 317

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL--LQSQDTM 245
             E++ ++ +F ++   + V +    A       V    +++K+  L++ L  + +Q   
Sbjct: 318 PKEVRSLASDFQKDAAFLNVGSLELAANHNITQVVDVLEEHAKQAKLMELLNHIMNQKEC 377

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
           K  IIF   K+    L  ++ + G+    IHG+ +Q  R  +L  FK G + +++A+D+A
Sbjct: 378 KT-IIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKMPILLATDVA 436

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           ARGLD+ D+  V N+D PN +E+Y+HRIGRTGR  + G A+T 
Sbjct: 437 ARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRRDKKGTAYTF 479


>gi|270016294|gb|EFA12740.1| hypothetical protein TcasGA2_TC002367 [Tribolium castaneum]
          Length = 668

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 138/398 (34%), Positives = 219/398 (55%), Gaps = 17/398 (4%)

Query: 5   DLGLSPKVVCAV-LDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
           D G  P+ +  V L  G+ +PT IQ +  P+VL   D+ GIAQTG+GKT +++LP +  +
Sbjct: 79  DEGNFPEYIMQVILKQGFAEPTAIQSQGWPVVLSGRDLVGIAQTGSGKTLAYMLPAVVHI 138

Query: 64  --EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             ++   R   P  LIL PTRELA Q+     ++G    +    + GG P   Q + LER
Sbjct: 139 NNQQRPQRGEGPVALILAPTRELAQQIQKVAHEFGSTTMVRNTCIFGGSPKGPQARDLER 198

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G +++I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQ L
Sbjct: 199 GVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRPDRQVL 258

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHC--FVATYAQYSKKCALLQQL 238
           ++SAT   ++Q ++E FL +  ++ +   S  A   I+          +  K C LL+++
Sbjct: 259 MWSATWPKQVQALAEEFLVDYIQVNIGGLSLAANHNIKQIVEVCEESEKEEKLCKLLKEI 318

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               D+    I+F   KK V ++   + ++G++  +IHG+  Q  R  +LS F+ G   +
Sbjct: 319 --GSDSCNKIIVFVETKKKVDDITKCIRREGYAAISIHGDKSQPERDYVLSEFRTGKSSI 376

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ DV +V NFD PN +E+Y+HRIGRTGR  + G A+      + +   
Sbjct: 377 LVATDVAARGLDVEDVKYVINFDYPNSSEDYVHRIGRTGRCQQAGTAYAFFTSNNQRQAK 436

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
            +  ++E+         +  N   E  D+AQ++   +N
Sbjct: 437 DLIAVLEE---------AGQNVSAELRDLAQNSRGSQN 465


>gi|317124438|ref|YP_004098550.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043]
 gi|315588526|gb|ADU47823.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM
           43043]
          Length = 807

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 132/351 (37%), Positives = 196/351 (55%), Gaps = 11/351 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA LGLS ++V  +   G   P PIQ  TIP  L   DV G  QTG+GKT +F LPM+T 
Sbjct: 342 FAALGLSERLVERLARDGITAPFPIQAATIPDALAGKDVLGRGQTGSGKTLAFGLPMITR 401

Query: 62  ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++E G  R  R P  L+L PTRELA QV+D  E       L   L+ GG+ +  Q   L 
Sbjct: 402 LVEAGLRRAPRRPHALVLVPTRELAMQVSDALEPLVHVAGLRHKLVAGGLSYTTQIAALN 461

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+LI TPGR+ D   RG + +++I I V+DEAD M +MGF+  I      +P   Q 
Sbjct: 462 KGVDILIATPGRLNDLLERGAVELDDIRITVLDEADHMAEMGFMAEITTSLDRIPAEGQR 521

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ + +  + E +L +P     +  +++ ET+EH  +    Q+ K       ++ 
Sbjct: 522 LLFSATLDNGIDAIVERYLTDPVIHSTDDATASVETMEHHVLLIDPQHKK-------VIT 574

Query: 241 SQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++   + G  ++FC  K     +   L +QG    A+HG + Q +R ++L  F++G++ +
Sbjct: 575 AEVANRPGLTLVFCRTKLGADRIATQLREQGVLAAALHGGLSQGARNRVLGAFRDGSLPV 634

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +VA+D+AARG+ + DV  V   D P   ++Y+HR GRT RAG  G   TL 
Sbjct: 635 LVATDVAARGIHVDDVSVVLQVDPPADHKDYLHRSGRTARAGDRGTVVTLA 685


>gi|281204115|gb|EFA78311.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 1026

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 144/361 (39%), Positives = 202/361 (55%), Gaps = 15/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ + PK+        + KP+ IQ +  P+V    D+ G+A TG+GKT +F+LP L  
Sbjct: 511 FKDIEI-PKIFQPAFQT-FTKPSVIQAQAWPIVSTGADLVGLAATGSGKTLAFLLPALME 568

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I    R     P  L++ PTRELA Q+ +  +   K   +    + GG     Q + L 
Sbjct: 569 IIKHPKRKYGATPLALVMAPTRELAQQIEEVCKNVVKGTAIRQLCVYGGTGKGLQVRSLR 628

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+++ TPGR+ D      L    ++ LV+DEADRMLDMGF+P I+ I + VP  RQT
Sbjct: 629 SGVDIIVGTPGRLNDLLTPNHL--ETVKFLVLDEADRMLDMGFMPQIEKIINQVPKERQT 686

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQ--- 236
           L+FSAT   E++ +S  FL  P R+ V NT  S    +    VAT        A +    
Sbjct: 687 LMFSATWPREVESLSNRFLNKPVRVTVGNTELSANINVHQHIVATTGMTRPDVAKMVGEQ 746

Query: 237 -QLLQSQDTMKNGII-FCNQKKNVVNLCHSL--EKQGFSVCAIHGNIDQRSRMKILSNFK 292
            Q + +QD   N II FCNQK+N  +    L  E Q  SV  +H   +Q  R + L+NFK
Sbjct: 747 IQEIHNQDKKDNLIIVFCNQKRNCDHFSEYLYNEFQMNSVV-MHSGKEQYQRERGLANFK 805

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
              I +M+A+D+AARGLDIP+V  V N D PN  E+Y+HRIGRTGRAG+ G +++ V++E
Sbjct: 806 SHRIPIMIATDVAARGLDIPNVKAVVNLDFPNNIEDYVHRIGRTGRAGKKGDSYSYVSRE 865

Query: 353 D 353
           D
Sbjct: 866 D 866


>gi|242086224|ref|XP_002443537.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
 gi|241944230|gb|EES17375.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
          Length = 618

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 209/367 (56%), Gaps = 11/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++ A LG+S K+V  +   G  K  PIQ   +   +Q  D+ G A+TGTGKT +F +P+L
Sbjct: 98  LEIAKLGISNKIVERLAKKGITKLFPIQRAVLEPAMQGRDMVGRAKTGTGKTLAFGIPIL 157

Query: 61  TILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             + +   + +    P  ++L PTRELA QV   F        L V    GG P   Q +
Sbjct: 158 DAIIRHNEKYKPGKFPLAIVLAPTRELAKQVEREFLDSSPLETLCV---YGGTPIMQQIR 214

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G DV+I TPGR++D   RG L +  I  +V+DEAD+ML +GF   ++ I   VP  
Sbjct: 215 QLNYGVDVVIGTPGRVIDLLKRGALSLAEIRFVVLDEADQMLSVGFDQDVETILERVPPQ 274

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALL 235
           RQTL+FSATM   ++K+++ +L +P  +++        AE I    ++  ++  +K A+L
Sbjct: 275 RQTLMFSATMPTWIRKLTQKYLNSPVTVDLVGEDDQKLAEGI--SLLSVSSENRQKPAVL 332

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +L++        I+F   K++   L HS+ +  F   A+HG+I Q  R + L  F++G 
Sbjct: 333 GELIKEHAKGGKCIVFTQTKRDADRLSHSMSRS-FQCEALHGDISQSQRERTLGGFRDGR 391

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +++A+D+AARGLDIP+V  V ++++PN +E ++HR GRTGRAG+ G A  +   E  +
Sbjct: 392 FNILIATDVAARGLDIPNVDLVIHYELPNSSEIFVHRSGRTGRAGKKGTAIVMYNYEQSR 451

Query: 356 HIDAIEK 362
            +  IE+
Sbjct: 452 AVRVIER 458


>gi|242081437|ref|XP_002445487.1| hypothetical protein SORBIDRAFT_07g020310 [Sorghum bicolor]
 gi|241941837|gb|EES14982.1| hypothetical protein SORBIDRAFT_07g020310 [Sorghum bicolor]
          Length = 666

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 132/360 (36%), Positives = 204/360 (56%), Gaps = 11/360 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +V   V   GY  PTPIQ KT+PL+L   DV  +A+TG+GKTA+F++PML  
Sbjct: 63  FESMGLCEEVYRGVRHKGYRVPTPIQRKTMPLILAGVDVAAMARTGSGKTAAFLVPMLQ- 121

Query: 63  LEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               R R R P    R LIL PTR+LA Q      + GK  +L  ++++GG   E+Q + 
Sbjct: 122 ----RLRRRDPSAGVRALILSPTRDLAMQTLKFCIQLGKFTDLRTSIIVGGDSMESQFED 177

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L    D++I TPGR++ H N  K + + ++E +V DEAD +  MGF  ++ +I   +  T
Sbjct: 178 LSECPDIIIATPGRLMHHLNDVKDMTLRSVEYVVFDEADSLFSMGFAKHLHDILKKLSDT 237

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT+   L   ++  L++P  + ++     +  +   F  T  Q  K  ALL  
Sbjct: 238 RQTLLFSATLPSALADFAKAGLRDPHIVRLDLDKKISPDLRLVFF-TLRQEEKLAALLYL 296

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + +   + +  IIF + K +V  L     ++G      +G +DQ +RM  +S F+     
Sbjct: 297 VRERISSEEQTIIFVSTKHHVEFLNILFREEGLEPSLSYGAMDQEARMIHISKFRARKTM 356

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L++ +D+AARGLDIP + +V N+D P + + ++HR+GR  R GR G A+T V  ED+ ++
Sbjct: 357 LLIVTDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRIGTAYTFVTSEDMPYL 416


>gi|332025702|gb|EGI65860.1| ATP-dependent RNA helicase DDX42 [Acromyrmex echinatior]
          Length = 752

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 130/330 (39%), Positives = 199/330 (60%), Gaps = 8/330 (2%)

Query: 29  IKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARV-RMPRTLILEPTRELAA 86
           IK I   L   D+ GIA+TG+GKTA+F+ PML  I+++   +    P  LIL PTREL+ 
Sbjct: 266 IKAIRKNLSGRDIIGIAKTGSGKTAAFIWPMLVHIMDQRELKAGDGPIGLILAPTRELSQ 325

Query: 87  QVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNN 146
           Q+    +K+GK YN+ V    GG     Q+K LE GA++++ TPGR++D        +  
Sbjct: 326 QIYQEAKKFGKVYNIQVCCCYGGGSKWEQSKALESGAEIVVATPGRMIDLVKMKATNLTR 385

Query: 147 IEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRI- 205
           +  LV+DEADRM DMGF P +++I + V   RQTLLFSAT   +++K++ + L +P RI 
Sbjct: 386 VTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQTLLFSATFKKKVEKLARDVLTDPIRIV 445

Query: 206 EVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ--SQDTMKNGIIFCNQKKNVVNLCH 263
           + +   +  +  +H  +       K   LLQ  ++  S  ++   +IF  +K N   L +
Sbjct: 446 QGDVGEANTDVTQHVIMFHNNPSGKWNWLLQNYIEFLSAGSL---LIFVTKKLNAEELAN 502

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
           +L+ + F V  +HG++DQ  R K+++ FK+  +  +VA+D+AARGLDIP +  V N+DV 
Sbjct: 503 NLKLKEFEVLLLHGDMDQIERNKVITAFKKKEVSTLVATDVAARGLDIPHIKTVVNYDVA 562

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
              + + HRIGRTGRAG  G A+TLV ++D
Sbjct: 563 RDIDTHTHRIGRTGRAGEKGTAYTLVTEKD 592


>gi|297830638|ref|XP_002883201.1| hypothetical protein ARALYDRAFT_479492 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329041|gb|EFH59460.1| hypothetical protein ARALYDRAFT_479492 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 408

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 204/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+G+   V+  V + G+ KP+ IQ + +  +LQ  DV   AQ+GTGKT+   L +  +
Sbjct: 37  FNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQV 96

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     V+    LIL PTRELA Q     +  G + N+     IGG       +KLE G
Sbjct: 97  VDTSSREVQ---ALILSPTRELATQTEKTIQAIGLHANIQAHACIGGKSVGEDIRKLEHG 153

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++L++DE+D ML  GF   I ++   +P   Q  L
Sbjct: 154 VHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCL 213

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+  P +I V     T E I+  FVA   +   +   C L   L 
Sbjct: 214 VSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL- 272

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   +    F+V ++HG++ Q+ R +I++ F+ G  +++
Sbjct: 273 ----TITQAVIFCNTKRKVDYLSEKMRSNNFTVSSMHGDMPQKERDEIMNQFRSGESRVL 328

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +  
Sbjct: 329 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRD 388

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 389 IEQYYSTQIDEMPMNVADL 407


>gi|291165179|gb|ADD81194.1| vasa [Auxis thazard]
          Length = 627

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 131/359 (36%), Positives = 206/359 (57%), Gaps = 14/359 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 194 MTFDEAALCESLRKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 253

Query: 61  T-ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G A  R      P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 254 QQLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGH 313

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q +++ RG +V+  TPGR+LD   RGK+ +  +  LV+DEADRMLDMGF P ++ +    
Sbjct: 314 QIREISRGCNVVCGTPGRLLDMIGRGKVGLTKLRYLVLDEADRMLDMGFEPDMRRLVGSP 373

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +++Q+++ +FL+     + V         +E  F+    ++S
Sbjct: 374 GMPSKENRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQV-TKFS 432

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL  LL++  + +  ++F   K+    +   L ++     +IHG+ +QR R + L+
Sbjct: 433 KREQLLD-LLKTTGSERT-MVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALA 490

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +F+ G   ++VA+ +AARGLDIPDV HV NFD+PN  + Y+HRIGRTGR G  G+A + 
Sbjct: 491 DFRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSF 549


>gi|295668368|ref|XP_002794733.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28
           [Paracoccidioides brasiliensis Pb01]
 gi|226286149|gb|EEH41715.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28
           [Paracoccidioides brasiliensis Pb01]
          Length = 803

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 127/384 (33%), Positives = 206/384 (53%), Gaps = 35/384 (9%)

Query: 3   FADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +A+ GL PK + +++D  GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 364 WAESGL-PKRLLSIIDKVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 422

Query: 62  IL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +       E    R   P  +IL PTRELA Q+    +K+       V  ++GG   E 
Sbjct: 423 YIGELPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAKKFSTPLGFNVVSIVGGHSLEE 482

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  ++++    +++DEADRM+D+GF   +  I   +
Sbjct: 483 QAYSLRNGAEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 542

Query: 175 PFT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNT 209
           P                           RQT++++ATM   +++++  +L+ P  + +  
Sbjct: 543 PVANEKPDTEDAENPQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 602

Query: 210 PSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269
                +T+E   V   +   K+   L ++L S++     I+F N K+N   +   ++  G
Sbjct: 603 VGEAVDTVEQR-VEFVSGEDKRKKRLAEILASREFRPPIIVFVNIKRNCDAVARDIKNMG 661

Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329
           +S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y
Sbjct: 662 YSSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESY 721

Query: 330 IHRIGRTGRAGRHGKAFTLVAKED 353
            HRIGRTGRAG+ G A T +  ED
Sbjct: 722 THRIGRTGRAGKSGVAITFLGNED 745


>gi|156405006|ref|XP_001640523.1| predicted protein [Nematostella vectensis]
 gi|156227658|gb|EDO48460.1| predicted protein [Nematostella vectensis]
          Length = 407

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 210/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+ KP+ IQ + I  +L+  DV   AQ+GTGKTA+F + +L  
Sbjct: 36  FDAMKLREDLLRGIYAYGFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQA 95

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    ++R P+ L+L PTRELA Q+       G   ++     IGG       +KL+ G
Sbjct: 96  ID---TQLREPQALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYG 152

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L   +I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 153 QHIVSGTPGRVFDMIRRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 212

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 213 LSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 271

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+ +F+ G  +++
Sbjct: 272 ----TITQAVIFCNTKRKVDWLTEKMREANFTVASMHGDMPQKEREAIMKDFRAGQSRVL 327

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 328 ISTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRD 387

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 388 IEQYYSTQIDEMPMNVADL 406


>gi|99032027|pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
 gi|99032028|pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
 gi|99032029|pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
 gi|99032030|pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
          Length = 434

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 126/361 (34%), Positives = 210/361 (58%), Gaps = 8/361 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++  V  +GY  PTPIQ  +IP++    D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 58  FTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSK 117

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L +    + +  P+ +I+ PTRELA Q+ +   K+     L + ++ GG  F  QN+ + 
Sbjct: 118 LLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECIT 177

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TR 178
           RG  V+I TPGR+LD  +R  +   +   +V+DEADRMLDMGF   ++ I + V      
Sbjct: 178 RGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEH 237

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT  +E+Q+++  FL+N   + +         ++   +    +Y+K+  L++ L
Sbjct: 238 QTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQT-IYEVNKYAKRSKLIEIL 296

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +  D     I+F   K+    L   L ++ F   +IHG+  Q  R + L +FK G++++
Sbjct: 297 SEQAD---GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKV 353

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+ +A+RGLDI ++ HV N+D+P++ ++Y+HRIGRTGR G +G+A +    E  + I 
Sbjct: 354 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIA 413

Query: 359 A 359
           A
Sbjct: 414 A 414


>gi|328849915|gb|EGF99087.1| hypothetical protein MELLADRAFT_50777 [Melampsora larici-populina
           98AG31]
          Length = 395

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 127/370 (34%), Positives = 204/370 (55%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   ++  +    + KP+ IQ + I  + +  DV   AQ+GTGKTA+F    ++I
Sbjct: 24  FDSLGLKDDLLRGIYAYNFEKPSAIQQRAILPITKGRDVIAQAQSGTGKTATF---SISI 80

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    ++R  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 81  LQSIDTQIRETQALVLSPTRELATQIQSVILALGDYMNIQCHACIGGTSIGEDIRKLDHG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   NI++LV+DEAD +L++GF   I ++   +P   Q ++
Sbjct: 141 QHVVSGTPGRVYDMIRRRNLRTRNIKMLVLDEADELLNLGFKDQIYDVYRYLPPQTQVVV 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 201 LSATLPYDVLEMTTKFMTDPIRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL- 259

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG++ Q+ R  I+  F+ GT +++
Sbjct: 260 ----TITQAVIFCNTRRKVDWLTEKMREANFTVSSMHGDMPQKERDTIMGEFRNGTSRVL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 316 ITTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRD 375

Query: 360 IEKLIEKKVD 369
           IE+    ++D
Sbjct: 376 IEQYYSTQID 385


>gi|116693959|ref|YP_839492.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|116651959|gb|ABK12599.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia HI2424]
          Length = 390

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 128/321 (39%), Positives = 187/321 (58%), Gaps = 11/321 (3%)

Query: 74  RTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
           + +IL PTRELA QVA    +  +   N+ V  L GG P   Q + LE GA +++ TPGR
Sbjct: 2   QAMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPGR 61

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           I+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  + P TRQTLLFSAT  D + 
Sbjct: 62  IMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTLLFSATYPDGIA 121

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           K+S+ FL+NPK I++      ++  +  +  T     ++   + QLL     +   I FC
Sbjct: 122 KLSQQFLRNPKEIKLAERHDDSKIRQRFYEVT---EDERLHAVGQLLNHYRPVST-IAFC 177

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
           N K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA+D+AARGLDI 
Sbjct: 178 NTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIA 237

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW-- 370
            +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE+  +++V+W  
Sbjct: 238 QLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGAIEQAQKREVEWHP 297

Query: 371 ----LNGDLSSLNPPLEKIDI 387
                  D S L PP+E + I
Sbjct: 298 LAELKPADDSVLLPPMETLQI 318


>gi|322818320|gb|EFZ25769.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 631

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 130/359 (36%), Positives = 207/359 (57%), Gaps = 16/359 (4%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-------EKGRARVRMP 73
           Y KPTP+Q   IP+VL  HD+   AQTG+GKTA++++P+++ +        +G+     P
Sbjct: 151 YQKPTPVQKYGIPVVLCGHDLMACAQTGSGKTAAYLIPLVSSILSNVTPNHQGQGSRSSP 210

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
             L++ PTREL+ Q+ +   K+     +   ++ GG     Q  +L RG  +L+ TPGR+
Sbjct: 211 AALVMAPTRELSIQIHEEGRKFTYRTGIRCVVVYGGADPRHQVHELSRGCGLLVATPGRL 270

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS------LVPFTRQTLLFSATM 187
            D F RG +  ++I  +V+DEADRMLDMGF P I+ I          P  RQTLL+SAT 
Sbjct: 271 WDVFTRGYVTFSSIRFMVLDEADRMLDMGFEPQIRMIVQGQESDMPPPGQRQTLLYSATF 330

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
             E+Q+++  FL     ++V    ST E I    V       K+  LL+ L ++Q+ +  
Sbjct: 331 PTEIQQLAREFLHRHYFLQVGRVGSTTENITQD-VRWVEDNDKREHLLRILHENQNQLI- 388

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            ++F  +K++   L   L     +  +IHG+  QR R + L  FK  + Q++VA+D+A+R
Sbjct: 389 -LVFVEKKRDADYLERFLRNNRVACASIHGDRVQREREEALKMFKSASCQVLVATDVASR 447

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           GLDIPDV  V  +D+P+  ++Y+HRIGRTGRAG+ G+A +   +++   +D +  L+ +
Sbjct: 448 GLDIPDVSIVIQYDMPSNIDDYVHRIGRTGRAGKVGRAISFFNEKNRNIVDDLVPLLNE 506


>gi|260808869|ref|XP_002599229.1| hypothetical protein BRAFLDRAFT_64422 [Branchiostoma floridae]
 gi|229284506|gb|EEN55241.1| hypothetical protein BRAFLDRAFT_64422 [Branchiostoma floridae]
          Length = 436

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 206/368 (55%), Gaps = 25/368 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DLG+   +  A     +  PT IQ + IPL L+  DV G+A+TG+GKT +F LP+L +
Sbjct: 23  FKDLGVVDVLCEACEHLKWTTPTKIQTEAIPLALEGKDVIGLAETGSGKTGTFALPILQS 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEK +        L+L PTRELA Q+++ FE  G +  +   +++GGI    Q  +L +
Sbjct: 83  LLEKPQRLF----ALVLTPTRELAFQISEQFEALGSSIGIKCVVVVGGIDMVTQALQLAK 138

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY-IQNITSLVPFTRQT 180
              V+I TPGR++DH                 E  +  ++  + Y +  I  ++P  R T
Sbjct: 139 KPHVIIATPGRLVDHL----------------ENTKGFNLRALKYLVDKILKVIPRERHT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+    L NP ++EVN+   T +T++  ++   ++Y K   L+  L  
Sbjct: 183 YLFSATMTKKVAKLQRASLSNPVKVEVNSKYKTVDTLQQSYLFIPSKY-KDVYLVSIL-- 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + ++FC+   N       L   GF+   +HG + Q SR+  L  FK  +  +++
Sbjct: 240 NELAGNSFMVFCSTCNNTQRTAFLLRNLGFNAIPLHGQLSQNSRLGALHKFKAKSRSILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 300 ATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRI 359

Query: 361 EKLIEKKV 368
           E LI KK+
Sbjct: 360 EHLIGKKL 367


>gi|242035801|ref|XP_002465295.1| hypothetical protein SORBIDRAFT_01g035760 [Sorghum bicolor]
 gi|241919149|gb|EER92293.1| hypothetical protein SORBIDRAFT_01g035760 [Sorghum bicolor]
          Length = 618

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 145/405 (35%), Positives = 222/405 (54%), Gaps = 30/405 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF DL L   ++  + + G V+PTPIQ++ +P+VL   D+ GIA TG+GKT  FVLP++ 
Sbjct: 174 DFRDLRLPEPMLRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIM 233

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
           +  +    + +     P  +I+ P+RELA Q  D  E++           +   L IGG+
Sbjct: 234 VAVQEEILMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLIPLKEAGYPEIRPLLCIGGV 293

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q   L++G  +++ TPGR+ D   + K+ ++N   L +DEADR++D+GF   I+ +
Sbjct: 294 DMRTQLDVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIKEV 353

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q  ++N L  P  + VN   + A  ++   V    +Y K
Sbjct: 354 FDHFKDQRQTLLFSATMPQKIQNFAKNALVKP--VTVNVGRAGAANLD---VIQEVEYVK 408

Query: 231 KCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A +  LL+  Q T    +IFC  K +V  +   L  +G    AIHG  DQ  R   + 
Sbjct: 409 EDARIIYLLECLQKTPPPVLIFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERQNAID 468

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T +
Sbjct: 469 SFKTGRKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 528

Query: 350 AKE-------DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
            K        D+KH      L+++    +   L+ LN PLE  +I
Sbjct: 529 NKNQTETTLLDLKH------LLKEAKQRIPPVLAELNDPLEDEEI 567


>gi|223992625|ref|XP_002285996.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977311|gb|EED95637.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 495

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 147/395 (37%), Positives = 216/395 (54%), Gaps = 38/395 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+ LGLS  ++  V   G+V PTPIQ   +P+ +   DVC  A TG+GKTA+F+LP++  
Sbjct: 4   FSQLGLSRPLLRGVASMGFVTPTPIQASVLPVAMAGRDVCASAVTGSGKTAAFLLPVMER 63

Query: 62  ILE--------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
           IL+              +  + +   R L+L PTRELAAQ         K  +L  AL++
Sbjct: 64  ILQRGGGRTTMGGLNAKRKASALAATRALVLTPTRELAAQCVSMMTAMAKFTDLRAALIV 123

Query: 108 GGIP-FEAQNKKLERGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIP 165
           GG     +Q  +L    DV++ TPGR+LDH  N   + ++++E L++DEADR+LD+GF  
Sbjct: 124 GGAKNVMSQAAELRSRPDVVVATPGRLLDHITNSQGVDLDDLEFLILDEADRLLDLGFQD 183

Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV-------NTPSST--AET 216
            +  I    P  RQTLLFSATM+ ++  + +  L+ P R++        N P+    A  
Sbjct: 184 EVHEIVKACPTERQTLLFSATMSTKVDDLIKLSLKQPVRVQATEKGKKDNAPTGVEVAPR 243

Query: 217 IEHCFVATYA--QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +E  FV   A  +   +  +L  LL    T +  I+F + K     L       G     
Sbjct: 244 LEQEFVRIRAGNEGVNREGMLLALLTRTFTSRV-IVFFDTKSAAHRLMIVCGLCGIKCTE 302

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HGN+ Q  R++ L  F+EG + +++A+DLAARGLDIP V  V NF++P++ + Y+HRIG
Sbjct: 303 LHGNLTQVQRLEALEAFREGNVDVLLATDLAARGLDIPGVECVINFEMPSQVDTYVHRIG 362

Query: 335 RTGRAGRHGKAFTLVA-------KEDIKHIDAIEK 362
           RT RAGR G + TL+        KE IK  DA EK
Sbjct: 363 RTARAGRGGNSCTLIGEGRRYLMKEVIK--DAEEK 395


>gi|319796562|ref|YP_004158202.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS]
 gi|315599025|gb|ADU40091.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
          Length = 483

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 140/396 (35%), Positives = 216/396 (54%), Gaps = 18/396 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L LSP+++  +   GY + T IQ   +P  L   D+   A+TG+GKTA+F L +L  
Sbjct: 21  FATLALSPQMLANLTQLGYTQMTAIQAAALPPALLGKDLIAQAKTGSGKTAAFALALLAN 80

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L   R  ++    ++L PTRELA QV     +  +   N+ V  L GG+    Q   LE 
Sbjct: 81  LNARRFAIQ---AMVLCPTRELADQVTTEIRRLARAEENIKVVTLCGGVALRGQIASLEH 137

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  RG L ++ +  LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 138 GAHIVVGTPGRIMDHLERGNLDLSALNTLVLDEADRMLDMGFFEDIVKVARQCPKERQTL 197

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K+++ F+++P++I V      ++  +  +    ++     +LL    + 
Sbjct: 198 LFSATYPEGIAKLAQQFMKSPQQITVQAQHEGSKIRQRWYQVKDSERLHTVSLLLDHFRP 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+     FCN K+   +L   L+ QGFS  A+ G ++QR R ++L  F   +  ++VA
Sbjct: 258 VSTLA----FCNTKQQCRDLVEVLQAQGFSALALFGELEQRERDQVLVQFANRSCSVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK----AFTLVAKEDIKHI 357
           +D+AARGLDI  +  V N DV   +E +IHR+GRTGR G+ G     A  L +  ++  +
Sbjct: 314 TDVAARGLDISHLEAVINVDVTPDSEIHIHRVGRTGRVGQSGDAEGLALNLASMNEMGSV 373

Query: 358 DAIEKLIEKKVDWLN------GDLSSLNPPLEKIDI 387
             IE+L  ++ +W        G  + L PP+  + I
Sbjct: 374 GKIEQLQGRESEWHELAELTPGKGAPLQPPMATLQI 409


>gi|300778148|ref|ZP_07088006.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
 gi|300503658|gb|EFK34798.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
          Length = 380

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 139/371 (37%), Positives = 210/371 (56%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ +V   GY+KP PIQ + +P++LQ  D+ GIAQTG+GKTA FV+P+L
Sbjct: 1   MSFESLGLSHNIIRSVNKLGYLKPFPIQEQAVPVILQGKDLMGIAQTGSGKTACFVMPIL 60

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNK 117
             L+    +  R  + LIL PTRELA Q+ + F+ +  N    +    + GG+    Q K
Sbjct: 61  EKLQNADVKKGRNIQVLILVPTRELAIQIDEVFKAFTGNLKREIRTMAVYGGVSINPQMK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +  G +VLI TPGR+LD  +   L ++ I  LVIDEAD+M  +GF   +  + +L+P  
Sbjct: 121 GM-FGVEVLIATPGRLLDLIDHNALSISGIRHLVIDEADKMFQLGFGEEMNKLFALMPVV 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QT LFSAT+ D++ ++ E    NP  IE+       E IE   +A +     K   L+ 
Sbjct: 180 KQTTLFSATLNDKVAEMKEKLSINPVIIEIKKEEVEIENIEQ--LAYHVAPENKGPFLRY 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++ +   K  +IF +  ++  NL   L+K      AIH    Q +R   L  FK    Q
Sbjct: 238 LIKEKKVEK-ALIFVSSTRSADNLVEKLKKNKIKAVAIHSQKSQGARRNNLEEFKVNGAQ 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+DL  RG+ I  +  V N+++P    +YIHRIGRTGRA   G A +++  ++++H 
Sbjct: 297 ILVATDLIGRGIHIESLPCVINYELPRSPLDYIHRIGRTGRANEKGTAISILTDDELQHF 356

Query: 358 DAIEKLIEKKV 368
             I+K + KKV
Sbjct: 357 RVIQKKMGKKV 367


>gi|324106744|gb|ADX41681.2| vasa [Cynoglossus semilaevis]
          Length = 722

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 134/370 (36%), Positives = 208/370 (56%), Gaps = 18/370 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 279 MTFEEAALCDSLSKNVSRSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 338

Query: 61  TILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L  G A       ++ P+ +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 339 HQLMIGGASSSFFSELQEPKAIIVAPTRELINQIFLEARKFAYGTVVRPVVVYGGVSIRH 398

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L +G +VL  TPGR++D   RGK+ ++ ++  V+DEADRMLDMGF P ++ + +  
Sbjct: 399 QVSDLNKGCNVLCGTPGRLMDMIERGKVGLSKVQYFVLDEADRMLDMGFEPDMRRLVASP 458

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +E+QK++ +FL+ +   + V         +E  F+    ++S
Sbjct: 459 GMPSREGRQTLMFSATFPEEIQKLAADFLKPDYLFLAVGIVGGACSDVEQTFIEV-GKFS 517

Query: 230 KKCALLQQLLQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
           K+    +QLL    T  N   I+F  +K+    +   L ++     +IHG+ +Q  R + 
Sbjct: 518 KR----EQLLDLVKTCGNERTIVFVEKKRQADFIATFLCQENVPTTSIHGDREQWQREQA 573

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L++FK G   ++VA+ +AARGLDIPDV HV NFD+P   + Y+HRIGRTGR G  G+A +
Sbjct: 574 LADFKYGKCPVLVATSVAARGLDIPDVQHVVNFDLPGSIDEYVHRIGRTGRCGNVGRAVS 633

Query: 348 LVAKEDIKHI 357
               +   H+
Sbjct: 634 FFDTDVDGHL 643


>gi|121699888|ref|XP_001268209.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
 gi|134034061|sp|A1CTZ6|DBP10_ASPCL RecName: Full=ATP-dependent RNA helicase dbp10
 gi|119396351|gb|EAW06783.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
          Length = 935

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 140/415 (33%), Positives = 223/415 (53%), Gaps = 44/415 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  ++ A+   G+  PTPIQ KTIP+++   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 91  FQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIPMIEK 150

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R LIL P+RELA Q     ++ GK  +L   LL+GG   E Q   +   
Sbjct: 151 LRSHSTKV-GARGLILSPSRELALQTLKVVKELGKGTDLKCVLLVGGDSLEEQFTMMAGN 209

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L + +I  +V DEADR+ +MGF   +  I   +P  RQTLL
Sbjct: 210 PDIVIATPGRFLHLKVEMNLDLYSIRYVVFDEADRLFEMGFAAQLTEILHGLPPNRQTLL 269

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA------------------- 223
           FSAT+   L + +   LQ P  I ++T S  +  +++ F +                   
Sbjct: 270 FSATLPKSLVEFARAGLQEPTLIRLDTESKISPDLQNAFFSIKSSEKEGALLYILHEVIK 329

Query: 224 ----------------TYAQYSK----KCALLQQLLQSQD--TMKNGIIFCNQKKNVVNL 261
                             A++SK    K A +++ + +++  T  + I+F   K +V  L
Sbjct: 330 MPTGPTEMAQQRQGEDASARFSKANKRKRAEMEKAVNTKESPTQHSTIVFAATKHHVDYL 389

Query: 262 CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321
              L + GF+V  ++G +DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D
Sbjct: 390 YSLLHEAGFAVSYVYGALDQTARKIQVQNFRSGLSNILVVTDVAARGIDIPILANVINYD 449

Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK--VDWLNGD 374
            P++ + +IHR+GRT RAGR G +++LV   D  ++  ++  + ++  V   NGD
Sbjct: 450 FPSQPKIFIHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRRLVVGRENGD 504


>gi|119188415|ref|XP_001244814.1| hypothetical protein CIMG_04255 [Coccidioides immitis RS]
 gi|118575174|sp|Q1DZK8|DBP3_COCIM RecName: Full=ATP-dependent RNA helicase DBP3
          Length = 464

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 134/341 (39%), Positives = 194/341 (56%), Gaps = 9/341 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-PRTLIL 78
           +  PTPIQ  + PL     D+ G+A+TG+GKT +F LP L  +LE   +     P  LI+
Sbjct: 119 FSSPTPIQAVSWPLAFAGRDLIGVAETGSGKTLAFGLPCLRRVLELNNSETSCKPCALII 178

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA Q+ D   ++    ++ +A + GG P + Q +++ R A V+I TPGR+ D   
Sbjct: 179 TPTRELAVQIYDQLLRFSSAVDVGIACIYGGSPKDHQRREI-RNASVVIATPGRLKDFQA 237

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQTLLFSATMTDELQKVSE 196
              + ++ ++ LV+DEADRMLD GF   IQ+I   +P T  RQT++F+AT    ++ ++ 
Sbjct: 238 DQTINLSGVKYLVLDEADRMLDKGFEQDIQDIVKGIPSTQKRQTIMFTATWPIGVRNLAA 297

Query: 197 NFLQNPKRIEVNTPSST-AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG---IIFC 252
           +F +NP  + +   S   A       V     Y K   LL+ L + QD  KN    ++FC
Sbjct: 298 SFTKNPVTVTIGDSSDIRANKRIKQMVEVLQPYEKDSRLLELLRRYQDGGKNNHRILVFC 357

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             KK  + +   +  +GF V  IHG++ Q  R + L  FK G+I L+VA+D+AARGLDIP
Sbjct: 358 LYKKEAMRVERFIGSKGFKVAGIHGDMSQTERFRSLEAFKSGSISLLVATDVAARGLDIP 417

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            V  V N   P   E+Y+HRIGRTGRAG  G A TL  + D
Sbjct: 418 AVKLVLNVTFPLTIEDYVHRIGRTGRAGAEGLAITLFTERD 458


>gi|309364627|emb|CAP24933.2| CBR-VBH-1 protein [Caenorhabditis briggsae AF16]
          Length = 692

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 141/380 (37%), Positives = 207/380 (54%), Gaps = 36/380 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
           +F+D G  P V+  V  +GY KPTP+Q  +IP +L   D+   AQTG+GKTA+F+LP++ 
Sbjct: 164 NFSDAGFGPAVMENVTRSGYTKPTPVQKHSIPTLLFNRDLMSCAQTGSGKTAAFLLPIIQ 223

Query: 61  -----------------------TILE----KGRARVRMPRTLILEPTRELAAQVADNFE 93
                                   IL+     GR R   P  L+L PTRELA Q+     
Sbjct: 224 HIMAGGPDMIKTVSSATNIFGFKVILQPTFNNGR-RTYYPSALVLSPTRELAIQIHKEAA 282

Query: 94  KYGKNYNLTVALLIGGIP-FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVI 152
           K+    NL  A+L GG   +  Q  +L  G  +LI TPGR++D   +G + ++    LV+
Sbjct: 283 KFSYKTNLQTAILYGGRENYRDQVNRLRSGVHILIATPGRLIDIIEQGFIGLSGCRYLVL 342

Query: 153 DEADRMLDMGFIPYIQNITS--LVPFT-RQTLLFSATMTDELQKVSENFL-QNPKRIEVN 208
           DEADRMLDMGF P I+ I    + P T R T +FSAT   E+Q ++++FL +N   + V 
Sbjct: 343 DEADRMLDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQLLAKDFLKENYVFLAVG 402

Query: 209 TPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
              ST+E IE   +  +    +K   L  +L ++D     ++F   K+    L + L +Q
Sbjct: 403 RVGSTSENIEQRLL--WVNEMEKRQNLMDILMNEDATNLVLVFVETKRGANELAYFLNRQ 460

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
                +IHG++ Q  R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P  ++ 
Sbjct: 461 QIRSVSIHGDLKQIERERNLEMFRSGQFPILVATAVAARGLDIPNVRHVVNYDLPGDSDE 520

Query: 329 YIHRIGRTGRAGRHGKAFTL 348
           Y+HRIGRTGR G  G A + 
Sbjct: 521 YVHRIGRTGRCGNLGIATSF 540


>gi|5901872|gb|AAD55444.1|AF181659_1 BcDNA.GM05306 [Drosophila melanogaster]
          Length = 641

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 141/395 (35%), Positives = 216/395 (54%), Gaps = 12/395 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP L  
Sbjct: 159 FYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLER 218

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +      + R L+L PTREL AQV    ++  +   + V L IGG+  +AQ   L +
Sbjct: 219 LLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQ 278

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I +    TRQT
Sbjct: 279 NPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQT 338

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM+++++ ++   L  P ++ VN     A  +   F+            +   L 
Sbjct: 339 MLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLI 398

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F   KK    L   L   G     +HGN+ Q+ R++ L  FKE  I +++
Sbjct: 399 CRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLI 458

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  I
Sbjct: 459 ATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDI 518

Query: 361 EKLIEKK----------VDWLNGDLSSLNPPLEKI 385
            K  E            ++     L+SL P ++ I
Sbjct: 519 IKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNI 553


>gi|225679862|gb|EEH18146.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28
           [Paracoccidioides brasiliensis Pb03]
          Length = 615

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 127/384 (33%), Positives = 206/384 (53%), Gaps = 35/384 (9%)

Query: 3   FADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +A+ GL PK + +++D  GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 176 WAESGL-PKRLLSIIDKVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 234

Query: 62  IL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +       E    R   P  +IL PTRELA Q+    +K+       V  ++GG   E 
Sbjct: 235 YIGELPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAKKFSTPLGFNVVSIVGGHSLEE 294

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  ++++    +++DEADRM+D+GF   +  I   +
Sbjct: 295 QAYSLRNGAEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 354

Query: 175 PFT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNT 209
           P                           RQT++++ATM   +++++  +L+ P  + +  
Sbjct: 355 PVANEKPDTEDAENPQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 414

Query: 210 PSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269
                +T+E   V   +   K+   L ++L S++     I+F N K+N   +   ++  G
Sbjct: 415 VGEAVDTVEQR-VEFVSGEDKRKKRLAEILASREFRPPIIVFVNIKRNCDAVARDIKNMG 473

Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329
           +S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y
Sbjct: 474 YSSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESY 533

Query: 330 IHRIGRTGRAGRHGKAFTLVAKED 353
            HRIGRTGRAG+ G A T +  ED
Sbjct: 534 THRIGRTGRAGKSGVAITFLGNED 557


>gi|19114126|ref|NP_593214.1| ATP-dependent RNA helicase Ddx27/Drs1 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|1351656|sp|Q09903|DRS1_SCHPO RecName: Full=ATP-dependent RNA helicase drs1
 gi|1065890|emb|CAA91889.1| ATP-dependent RNA helicase Ddx27/Drs1 (predicted)
           [Schizosaccharomyces pombe]
          Length = 754

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 138/397 (34%), Positives = 212/397 (53%), Gaps = 14/397 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  ++  + + G+  PT IQ KTIPL L   D+ G A TG+GKTA+F++P+L  
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R LIL PTRELA Q      K     ++ V L IGG+  + Q ++L + 
Sbjct: 321 LLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKR 380

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR +DH  N     + NIEI+V+DEADRML+ GF   +  I    P +RQT+
Sbjct: 381 PDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTM 440

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMTD++  +    L  P R+ V+   +TA+ +   FV    Q       +   L  
Sbjct: 441 LFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCK 500

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  IIF   K     +         +   IHG++ Q  R++ L +F++G    ++A
Sbjct: 501 ELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLA 560

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI- 360
           +D+A+RG+DI  +  V N++ P   E Y+HR+GRT RAGR G+A TL  + D K +  + 
Sbjct: 561 TDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKGVF 620

Query: 361 -------EKLIEKKVDW-----LNGDLSSLNPPLEKI 385
                   KL+ + +D+        ++  L P ++K+
Sbjct: 621 KNSSAQNTKLVNRNLDFNKVEKFGKEIEELEPVVQKV 657


>gi|71024093|ref|XP_762276.1| hypothetical protein UM06129.1 [Ustilago maydis 521]
 gi|74699014|sp|Q4P184|FAL1_USTMA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|46101778|gb|EAK87011.1| hypothetical protein UM06129.1 [Ustilago maydis 521]
          Length = 397

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 122/370 (32%), Positives = 207/370 (55%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +    + KP+ IQ + I  +++  DV   AQ+GTGKTA+F + ML  
Sbjct: 26  FDAMGLKEDLLRGIYAYNFEKPSAIQQRAILPIIRGRDVIAQAQSGTGKTATFSISMLQS 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     +R  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 86  ID---TTLRETQALVLSPTRELAIQIQSVVLALGDYLNVQCHACIGGTSVGEDIRKLDYG 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L   NI++L++DE+D +L+MGF   I ++   +P + Q +L
Sbjct: 143 QHIVSGTPGRVYDMIRRRHLRTKNIKMLILDESDELLNMGFKDQIYDVYRYLPPSTQVVL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 203 LSATLPQDVLEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL- 261

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   +++  F V ++HG + Q+ R ++++ F++G+ +++
Sbjct: 262 ----TITQAVIFCNTRRKVDWLSAKMKENNFQVSSMHGEMQQKERDEVMAEFRQGSSRVL 317

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+DI ++  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  
Sbjct: 318 ITTDVWARGIDIANISLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTVDDVRTLRD 377

Query: 360 IEKLIEKKVD 369
           IE+    ++D
Sbjct: 378 IEQFYSTQID 387


>gi|328869570|gb|EGG17948.1| DEAD/DEAH box helicase [Dictyostelium fasciculatum]
          Length = 631

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 141/384 (36%), Positives = 210/384 (54%), Gaps = 28/384 (7%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA++ L  +++  + +A G  KPTPIQI+ +P+ L   D+ GIA TG+GKT  F LPM+ 
Sbjct: 187 FAEMKLPREIIRYLKEAKGIKKPTPIQIQGLPVALSGRDMIGIAFTGSGKTLVFALPMVL 246

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVAD------NFEKYGKNYNLTVALLIGGI 110
           +      R+ +     P  LI+ P+RELA Q  D      +  K  + + L   L IGGI
Sbjct: 247 LAMDAEKRLPIEAGEGPFGLIICPSRELARQTYDLVNALSDAIKKERGFELRTLLAIGGI 306

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q    +RG  +++ TPGR++D  N+ ++ +   + L +DEADR++D+GF   I+ +
Sbjct: 307 DMGEQEHLFKRGIHMIVATPGRLIDLLNKRRVSLAYCKYLGLDEADRLIDLGFEDDIRTV 366

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q  + + L  P  +EVN   + A  ++      Y +   
Sbjct: 367 MDYFQGQRQTLLFSATMPKKIQTFARSALVRP--VEVNVGRAGAANLDVIQEVEYVKQES 424

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K   L + LQ   T    +IFC  KK+V ++   L  +     A+HG+  Q  R   +  
Sbjct: 425 KIVYLLECLQK--TAPPVLIFCENKKDVDDIHEYLLLKQVEAVAVHGDKSQEERDTAIKA 482

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK+G   ++VA+D+A++GLD PD+ HV NFD+P   ENYIHRIGRTGR G+ G A T + 
Sbjct: 483 FKDGKKDVLVATDVASKGLDFPDIQHVINFDMPKEIENYIHRIGRTGRCGKTGVATTFIN 542

Query: 351 KE-------DIKHIDAIEKLIEKK 367
           K        D+KH+     LIE K
Sbjct: 543 KNQSESVLLDLKHL-----LIESK 561


>gi|120538559|gb|AAI29874.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
          Length = 615

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 204/374 (54%), Gaps = 14/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LKFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 154 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 209

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 270 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 329

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 330 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 388

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 389 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448

Query: 353 DIKHI-DAIEKLIE 365
           +IK + D I  L E
Sbjct: 449 NIKQVSDLISVLRE 462


>gi|50551521|ref|XP_503234.1| YALI0D24497p [Yarrowia lipolytica]
 gi|74689555|sp|Q6C7X8|DBP10_YARLI RecName: Full=ATP-dependent RNA helicase DBP10
 gi|49649102|emb|CAG81435.1| YALI0D24497p [Yarrowia lipolytica]
          Length = 926

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 136/413 (32%), Positives = 221/413 (53%), Gaps = 48/413 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLS  V+  +   G+ +PTPIQ KTIPLVL+  DV G+A+TG+GKTA+FVLPML  
Sbjct: 104 FAGLGLSQLVLKNIARKGFKQPTPIQRKTIPLVLEGKDVVGMARTGSGKTAAFVLPMLEK 163

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+V   R +IL P+RELA Q     + +    +L +A+L+GG   E Q K +   
Sbjct: 164 LKVHSAKVGA-RAVILSPSRELALQTLKVVKDFSAGTDLRLAMLVGGDSLEEQFKMMMSN 222

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L      +L + ++E +  DEADR+ ++GF   +  + + +P  RQTLL
Sbjct: 223 PDIIIATPGRFLHLKVEMELSLASVEYICFDEADRLFELGFGEQMNELLASLPSNRQTLL 282

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA--LLQQLLQ 240
           FSAT+   L + ++  L +P  + ++  +   E +E  F A        C   +L++++Q
Sbjct: 283 FSATLPKTLVEFAKAGLHDPILVRLDAETKLPEHLEMTFFAVKENQRDACLAFILKEVIQ 342

Query: 241 -------------------------SQD--------------------TMKNGIIFCNQK 255
                                     +D                    + K+ I+FC  K
Sbjct: 343 MPFATPEQLKELERLDERAIDDGERDEDRKQKRPKFKKERLPPAHQLPSEKSTIVFCPTK 402

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
            +V  +   L+  G++V  I+G +DQ +R   L  F+ G   ++V +D+AARG+D+P + 
Sbjct: 403 HHVEYVIVLLQTLGYAVSYIYGTLDQHARKNQLYRFRTGKTSILVVTDVAARGIDVPVLA 462

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           +V N+ +P   + +IHR+GRT RAG  G A++++   DI ++  +E  + +K+
Sbjct: 463 NVINYSLPPSPKVFIHRVGRTARAGNRGWAYSIIKDNDIPYLLDLEVFLGRKL 515


>gi|89094563|ref|ZP_01167501.1| probable ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
 gi|89081162|gb|EAR60396.1| probable ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
          Length = 410

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 124/368 (33%), Positives = 211/368 (57%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
            AD+   P++   +  +  +  T +Q + IPL L+  D+   + TG+GKTA++++P++  
Sbjct: 2   LADIAFHPQLEENLKSSELLSATEVQQQAIPLALEGADLLISSPTGSGKTAAYLIPVIQE 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G++  R P+ ++L P RELA Q+A  F+K     +L    ++GG  F+ Q K+L R 
Sbjct: 62  LSAGKSPTRQPKAIVLVPVRELAEQIASFFDKLAAGLDLNAVAIVGGEDFKKQEKQLAR- 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           AD+++ TPGR++ H     + ++++++LV+DEADR+L+ GF   +  I +L P  RQTLL
Sbjct: 121 ADLVVATPGRLIPHLENRSIELDSLDLLVLDEADRILETGFKEALDQILTLCPEARQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
            SAT+   ++K++E  LQ P+ + V         IE   + +  Q  K    C LL+   
Sbjct: 181 VSATLPTSVRKLAERILQEPEWVRVGQKREVEANIEQRIILSDDQTLKDKQLCWLLEN-- 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              ++    ++FCN K     L   +    F    +HG++ Q+ R   +  F++GT +++
Sbjct: 239 ---ESYDKAVVFCNSKTEARRLDGFIRYHKFKAALLHGDVQQKGRFATIEGFRKGTTKIL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +DLAARGLDI  V  V N ++P + + YIHRIGRTGR G  GKA +L++  +   + +
Sbjct: 296 VTTDLAARGLDIEGVDLVINTEIPRKGDLYIHRIGRTGRGGASGKAVSLISPAEWNLMSS 355

Query: 360 IEKLIEKK 367
           IE+ ++ +
Sbjct: 356 IERYLKTR 363


>gi|308810286|ref|XP_003082452.1| putative nicotiana eukaryotic (ISS) [Ostreococcus tauri]
 gi|116060920|emb|CAL57398.1| putative nicotiana eukaryotic (ISS) [Ostreococcus tauri]
          Length = 404

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 129/370 (34%), Positives = 202/370 (54%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G+   ++  +   G+ KP+ IQ + +  ++   DV   AQ+GTGKT+   L +  +
Sbjct: 33  FDAMGIREDLLRGLYSYGFEKPSAIQQRAVVPIISGRDVIAQAQSGTGKTSMISLALCQM 92

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     V+    L+L PTRELA Q        G   N+ V   IGG       +KL+ G
Sbjct: 93  LDTTSREVQ---GLVLSPTRELAVQTEKTALALGNFMNVQVHACIGGRSIGEDIRKLDYG 149

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L    I+ILV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 150 CHIVSGTPGRVFDMIKRRNLRTRGIKILVLDEADEMLNKGFKEQIYDVYRYLPPETQVVL 209

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+ +E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 210 VSATLPNEVLEMTGKFMTDPLRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 268

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN KK V  L   + +  F+V A+HG++ Q+ R +I++ F+ GT +++
Sbjct: 269 ----TITQAVIFCNTKKKVDWLTEKMRQNNFTVSAMHGDMPQKEREEIMNEFRGGTTRVL 324

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V +ED++ +  
Sbjct: 325 ITTDMWARGIDVQQVSLVINYDLPGNRENYIHRIGRSGRYGRKGVAINFVKEEDVRALRD 384

Query: 360 IEKLIEKKVD 369
           IE+    ++D
Sbjct: 385 IEQYYSTQID 394


>gi|307261010|ref|ZP_07542692.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869312|gb|EFN01107.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 406

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 139/387 (35%), Positives = 222/387 (57%), Gaps = 12/387 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   V+ A+   G+   TPIQ KT+P+ L  +D+ G AQTGTGKT +F++ +   
Sbjct: 10  FIDFPIHENVLAALDSKGFEFCTPIQAKTLPITLAGNDIAGQAQTGTGKTLAFLIAVFHY 69

Query: 63  LEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L    +      PR +IL PTRELA Q+  + E   K+ +L +AL  GG  ++ Q + +E
Sbjct: 70  LLTNDSATNKNQPRAIILAPTRELAVQIGSDAELLVKHSDLKLALAYGGDGYDKQIQAIE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ- 179
           +G D+L+ T GR++D+  +G + ++ ++++V+DEADRM D+GFI  I+ +    P   Q 
Sbjct: 130 QGVDILVGTTGRVIDYVKQGIINLDKVQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEQR 189

Query: 180 -TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237
            T+LFSAT++  +++++   + N + +E+     T   I E  F   Y     K ALL  
Sbjct: 190 LTMLFSATLSPRVRELAYEDMDNAQYVEIEPLQRTGHRIKEELF---YPSNEDKMALLLT 246

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +      +IF N K     +   L   G  V  + G+I Q+ R+ +L +F +G + 
Sbjct: 247 LLEEE-WPDRCMIFANTKHKCEEIWGYLVADGHRVGLLTGDIAQKKRLALLDSFTKGQLD 305

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP+V HVFN+D+P+  E+YIHRIGRTGRAG  G + +   +    ++
Sbjct: 306 ILVATDVAARGLHIPEVTHVFNYDLPDDCEDYIHRIGRTGRAGESGHSISFACERYAVNL 365

Query: 358 DAIEKLIEKKV---DWLNGDLSSLNPP 381
            AIE  I   +    + +G L +L  P
Sbjct: 366 PAIEAYIGHHIPVSQYDSGALLALPKP 392


>gi|295104399|emb|CBL01943.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
           SL3/3]
          Length = 395

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 212/370 (57%), Gaps = 19/370 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M +++L  S  +  AV   G+ + T IQ KTIPL+L  HDV   A TGTGKT +F +P  
Sbjct: 1   MLYSELQCSEAIHKAVERMGFAEMTEIQEKTIPLMLAGHDVIAKAPTGTGKTCAFGIP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-------VALLIGGIPFE 113
            ++E  +   + P+ +I+ PTRELA Q+A+         NLT       VA + GG   E
Sbjct: 59  -VVEHIQPENKYPQAVIMAPTRELAQQIAEELT------NLTYFMPEVQVACVYGGANME 111

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q K+L  G  +++ TPGR++DH+    + ++++  +V+DEAD ML+MGF   +++I  +
Sbjct: 112 KQAKRLAEGCQIVVATPGRLMDHYKHHSIDISHVTQIVLDEADEMLNMGFYKDVRHIIEM 171

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +   +   +FSAT++ E+  +   +  N + I V     +   I    + T  +   K +
Sbjct: 172 MKARKALSMFSATISREVMDIGWLYQHNAEEITVQPREESQPKITQYMLETSGR--NKLS 229

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L Q++  +   K  ++FC+ K N   L + L + GFSV  +HG++ Q+ R +I+  F++
Sbjct: 230 DLAQIIIGEG-YKRVMVFCDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQAFRD 288

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G + ++VA+D+AARG+D+ DV  V N+DVP+  E+Y HRIGRTGRA + G ++     E+
Sbjct: 289 GKLAILVATDVAARGIDVSDVDAVINYDVPSENEHYTHRIGRTGRAKKEGVSYLFYVPEE 348

Query: 354 IKHIDAIEKL 363
            K +  + +L
Sbjct: 349 KKRVQELLRL 358


>gi|294101359|ref|YP_003553217.1| DEAD/DEAH box helicase domain protein [Aminobacterium colombiense
           DSM 12261]
 gi|293616339|gb|ADE56493.1| DEAD/DEAH box helicase domain protein [Aminobacterium colombiense
           DSM 12261]
          Length = 555

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 123/371 (33%), Positives = 203/371 (54%), Gaps = 6/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    L  +++ A+ + G+  PTP+Q + +   +   D+   A+TG+GKT +F+LP+L 
Sbjct: 5   NFEQYELRAELLKALAEKGFSTPTPVQDRVLSEKIFEKDIIVRAKTGSGKTLAFLLPLLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  G    R  + LIL PTREL+ Q+    + +G   N++ A L+GG+    Q + L  
Sbjct: 65  KITAGE---RESKVLILSPTRELSQQIWKEAKWFGNYINVSAASLVGGMDMSQQIRSLRD 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G+ V+  TPGR+LDH  RG L  + I+I+V+DE D MLD+GF   ++ I   +P  ++  
Sbjct: 122 GSAVVTGTPGRVLDHIRRGTLDTSGIKIVVLDEGDHMLDLGFKEELEAILDSLPNCQRVW 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++ +++ +L+ P  I +       E I H       ++ K+  L+  LL  
Sbjct: 182 LFSATMPAEIKNLAKRYLKTPVFISLTEEGEAHEDITHEVYLVPTRH-KEEGLINVLLWE 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + +    I+FC+ +   V L   L  + F    +HG + QR R   LS F+ G   L+VA
Sbjct: 241 KPS--RAIVFCHTRAETVELTRRLHDENFQAMCLHGEMSQRERNMALSQFRSGRTPLLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +++AARGLD+  V HV    +P+  E ++HR GRTGRAG  G+   +++ ++     ++ 
Sbjct: 299 TNVAARGLDVEGVSHVIQMGLPDNRETFVHRSGRTGRAGHEGRNLLVLSPKEATGFKSMV 358

Query: 362 KLIEKKVDWLN 372
           K     + W N
Sbjct: 359 KTSTIPITWKN 369


>gi|281203069|gb|EFA77270.1| DEAD/DEAH box helicase domain-containing protein [Polysphondylium
           pallidum PN500]
          Length = 1147

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 125/370 (33%), Positives = 207/370 (55%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+ KP+ IQ + I  +++ HD    AQ+GTGKTA+F +  L  
Sbjct: 50  FESMHLKDDLLRGIFGFGFEKPSAIQQRAILPIIKGHDTIAQAQSGTGKTATFSIGALQS 109

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     V+ P+ LIL PTRELA Q+       G   ++ V   +G        ++LE G
Sbjct: 110 ID---VSVKSPQVLILSPTRELAQQIQKVLMALGGFMSVQVHAFVGQKTIAEDLRRLEAG 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+LD  +R  L   +I++L++DEAD ML +GF   I ++   +P   Q +L
Sbjct: 167 VHIVSGTPGRVLDLISRKALATRHIKMLILDEADEMLGLGFQQQINDVYRYLPPATQIVL 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+T ++  ++E F+ +P RI +     T E I+  FV+   +   +   C +   L 
Sbjct: 227 VSATLTQDVINMTEKFMTDPVRILLKRDELTLEGIKQFFVSVEKEEWKFGTLCDIYDSL- 285

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG+++Q+ R +I+ +F+ G  +++
Sbjct: 286 ----TITQAVIFCNTKQKVNILTDKMREANFTVASMHGDMEQKEREEIIKSFRSGENRVL 341

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  ENYIHRIGR+GR GR G A   V   DI+ +  
Sbjct: 342 ITTDILARGIDVQQVSLVINYDLPNDRENYIHRIGRSGRFGRKGVAINFVKSSDIRILRD 401

Query: 360 IEKLIEKKVD 369
           IE+    ++D
Sbjct: 402 IEQFYSTQID 411


>gi|170044624|ref|XP_001849941.1| ATP-dependent RNA helicase DRS1 [Culex quinquefasciatus]
 gi|167867695|gb|EDS31078.1| ATP-dependent RNA helicase DRS1 [Culex quinquefasciatus]
          Length = 807

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 133/351 (37%), Positives = 199/351 (56%), Gaps = 2/351 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   DVCG A TGTGKTA+++LP L  
Sbjct: 188 FYQMNLSRPLMKAIGFLGYIYPTPIQAATIPIALMGRDVCGCAATGTGKTAAYMLPTLER 247

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L K  A   + R L+L PTREL AQV    ++  +  ++ V + IGG+  +AQ   L  
Sbjct: 248 LLYKPSAAQAVTRVLVLVPTRELGAQVYQVTKQLTQYTSIEVGIAIGGLDVKAQEAVLRT 307

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I      +RQT
Sbjct: 308 NPDIVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIIQSCSKSRQT 367

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTD+++ ++   L  P ++ VN   + A  +   F+            +   L 
Sbjct: 368 MLFSATMTDQVKDLAAVSLSKPVKVFVNNNQTVAFNLRQEFIRIRESRDADREPILAALI 427

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F   KK    L   L   G     +HG++ Q  R++ L  FK+  I ++V
Sbjct: 428 CRTFHDHCMVFVQTKKTAHRLRILLGLLGVKAGELHGDLTQSQRLESLKQFKDEQIDVLV 487

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAG+ G + +L  +
Sbjct: 488 ATDVAARGLDISGVKTVINFVMPATMEHYIHRVGRTARAGKAGVSVSLAGE 538


>gi|74625309|sp|Q9P6U9|DED1_NEUCR RecName: Full=ATP-dependent RNA helicase ded-1
 gi|7635831|emb|CAB88635.1| probable ATP-dependent RNA helicase DED1 [Neurospora crassa]
          Length = 688

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 136/363 (37%), Positives = 200/363 (55%), Gaps = 21/363 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L
Sbjct: 194 LTFSNPPLDNHLISNIQLARYNVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPIL 253

Query: 61  T--------------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
           +                  GR R   P  LIL PTREL +Q+ D   K+     +   ++
Sbjct: 254 SQSFHTGPSPIPASAAGAYGRQRKAYPTALILAPTRELVSQIYDEARKFAYRSWVRPCVV 313

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 314 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQ 373

Query: 167 IQNITSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I    V
Sbjct: 374 IRRIVEGEDMPKVNDRQTLMFSATFPRDIQILARDFLKDYIFLSVGRVGSTSENITQK-V 432

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  K+  LL  L      +   +IF   K+   +L   L  Q F   +IHG+  QR
Sbjct: 433 EYVEDIDKRSVLLDILHTHAGGLT--LIFVETKRMADSLSDFLINQNFPATSIHGDRTQR 490

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 491 ERERALEMFRNGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 550

Query: 343 GKA 345
           G A
Sbjct: 551 GIA 553


>gi|327282682|ref|XP_003226071.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Anolis
           carolinensis]
          Length = 840

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 133/359 (37%), Positives = 203/359 (56%), Gaps = 10/359 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   V+  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F++PM   
Sbjct: 65  FQSMGLSYPVFKGVMKKGYKIPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFEK 124

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ G+   L  AL++GG   E Q   L   
Sbjct: 125 LKAHSAKT-GARALILSPTRELALQTLKFTKELGRFAGLKTALILGGDKMEDQFAALHEN 183

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++      KL ++++E +V DEADR+ +MGF  +++ I S +P +RQT+L
Sbjct: 184 PDIIIATPGRLMHVAVEMKLKLHSVEYVVFDEADRLFEMGFSEHLKEIISRLPESRQTVL 243

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS- 241
           FSAT+   L + +   L  P  I ++  S  +E ++  F    A    K ALL  LL++ 
Sbjct: 244 FSATLPKVLVEFARAGLTEPVLIRLDVESKLSEQLKLSFYHIRA--DDKPALLLYLLRTV 301

Query: 242 ---QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              QD     I+F   K +   L   L  QG     ++ ++DQ +R   +  F  G   +
Sbjct: 302 VRPQDQT---IVFVATKHHTEYLKELLTAQGVDCTHVYSSLDQTARKINIGKFTHGKCSV 358

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ +DLAARG+DIP + +V N+  P + + ++HR+GR  RAGR G A++ VA ++  ++
Sbjct: 359 LIVTDLAARGIDIPLLDNVINYSFPAKPKLFLHRVGRVARAGRSGTAYSFVAPDETPYL 417


>gi|156553939|ref|XP_001602245.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 836

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 154/450 (34%), Positives = 237/450 (52%), Gaps = 27/450 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ LS  ++ AV    +V PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP L  
Sbjct: 156 FYNMNLSRPLLKAVTSMNFVNPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPTLER 215

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L        + R L+L PTREL  QV    ++  +  ++ V L +GG+  + Q   L + 
Sbjct: 216 LLYRPLDGAVTRVLVLVPTRELGVQVYQVTKQLSQFTSVEVGLSVGGLDVKVQESVLRKN 275

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR++DH  N     ++ IE+L++DEADRMLD  F   +++I      TRQT+
Sbjct: 276 PDIVIATPGRLIDHLANTPTFSLDTIEVLILDEADRMLDEYFAEQMKHIVRQCARTRQTI 335

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT+E++ ++   L  P ++ V++    A  +   F+    +       +   L  
Sbjct: 336 LFSATMTEEVKDLAAVSLDKPVKVFVDSNQDVAFNLRQEFIRIRKEREGDREAILAALIC 395

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + ++F   KK    L   L   G  V  +HGN+ Q  R++ L  FK+  I +++A
Sbjct: 396 RTFHDHTMVFVQTKKQAHRLHIVLGLLGVKVGELHGNLSQPQRLENLRKFKDEEIDVLLA 455

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL-------VAKEDI 354
           +D+AARGLDI  V  V NF +P   ++YIHR+GRT RAGR G + +L       + KE I
Sbjct: 456 TDVAARGLDISGVKTVINFVMPATLQHYIHRVGRTARAGRGGVSVSLAGEQERSLVKEVI 515

Query: 355 KHI-----------DAIEKLIEKKVDWLNGDLSS-LNPPLEKIDIAQ-HNHARKNNPIPQ 401
           K             D IEK   KK+  +  D+ + L    +  +IA+  N A +   + +
Sbjct: 516 KQAKNPVKNRIIPPDIIEKY-NKKLQSIEEDVENILEEERQDREIAKIENQANRAENMLK 574

Query: 402 KSTGFDRR-----KKNYSSQKSHIPLKESE 426
           +S   D+R     KK   S+K  + L E +
Sbjct: 575 ESDSKDQRSWFQTKKERQSEKEKLMLTEKQ 604


>gi|328781103|ref|XP_394925.4| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Apis
           mellifera]
          Length = 626

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 126/363 (34%), Positives = 205/363 (56%), Gaps = 7/363 (1%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG- 66
           + P+++  +    +VKP+PIQ +  P++L   D+ GIAQTGTGKT +F+LP L  +E   
Sbjct: 221 IYPEILDEIRKQKFVKPSPIQSQAWPILLSGRDLIGIAQTGTGKTLAFLLPALIHIEGQQ 280

Query: 67  --RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
             R   + P  LI+ PTRELA Q+     KY   + +    L GG   + Q   +  G +
Sbjct: 281 IPRVERKGPNVLIMAPTRELALQIEKEVNKYS-YHGIKAVCLYGGGSRKKQVNVVTEGVE 339

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           ++I TPGR+ D      L +++I  LV+DEADRMLDMGF P I+     +   RQT++ S
Sbjct: 340 IVIATPGRLNDLVEAKILNISSITYLVLDEADRMLDMGFEPQIRKTLLDIRPDRQTVMTS 399

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQSQD 243
           AT    ++++++++++NP  I+V   S    T+       Y     +K  ++ +  +   
Sbjct: 400 ATWPQGVRRLAQSYMKNP--IQVFVGSLDLATVHTVMQKVYIVDEEEKTDMMYEFFRKMS 457

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
                IIF  +K  V ++   L  Q  +  +IHG  +Q  R + L + K G +Q+++A+D
Sbjct: 458 PNDKVIIFFGKKTKVDDVASDLALQSVNCQSIHGGREQSDREQALEDLKTGEVQILLATD 517

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +A+RG+DI D+ HV N+D P   E Y+HR+GRTGRAGR G++ T + ++D  H   +  +
Sbjct: 518 VASRGIDIEDITHVLNYDFPRDIEEYVHRVGRTGRAGRSGESITFMTRKDWTHAKDLINI 577

Query: 364 IEK 366
           +E+
Sbjct: 578 LEE 580


>gi|294505859|ref|YP_003569917.1| Cold-shock DEAD-box protein A [Salinibacter ruber M8]
 gi|294342187|emb|CBH22965.1| Cold-shock DEAD-box protein A [Salinibacter ruber M8]
          Length = 478

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 126/351 (35%), Positives = 200/351 (56%), Gaps = 10/351 (2%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
            LS  +  AV  AG+ +   +Q K IP  L   D+   +QTG+GKT +F+LP+  ++   
Sbjct: 47  ALSGHMEQAVHAAGWTELMDVQRKAIPYTLDGRDLIVQSQTGSGKTGAFLLPLFDLVNPD 106

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYG----KNYNLTVALLIGGIPFEAQNKKLERG 122
           +   ++   LIL PTRELA Q+ + FE+      +   +   L+ GG+ ++ Q   L+ G
Sbjct: 107 KEEQQV---LILTPTRELARQIHEEFEQMKIATPRTNRMEAVLIYGGVGYQPQIDGLKNG 163

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A V+I TPGRILDH  +     + + +LV+DEAD ML MGF P +++I   VP  R + +
Sbjct: 164 AQVVIGTPGRILDHIKKDNFDASTLRMLVLDEADEMLSMGFYPDMKDIVEHVPGDRVSYM 223

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           +SATM  +++ V+  FL +P  + ++T   + E  E+ +         K  ++ QLL+ +
Sbjct: 224 YSATMPPKVRSVAREFLDDPGFLSLSTDKVSVEENEYRYYLVNPM--DKDRVMAQLLELE 281

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  ++ +IF N K+ V  L   L  +G+ +  + G++ QR R + L   +EG ++L+VA+
Sbjct: 282 EP-ESALIFANTKREVSYLNKFLSNKGYDIDEMSGDLSQRDREEALDRLREGKLRLLVAT 340

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           D+AARG+D+ D+ HVF +DVP   E  IHR GRT RAG  G    L   ED
Sbjct: 341 DVAARGIDVSDLSHVFIYDVPQDHEYIIHRSGRTARAGEEGTTIVLSTHED 391


>gi|145500870|ref|XP_001436418.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124403557|emb|CAK69021.1| unnamed protein product [Paramecium tetraurelia]
          Length = 395

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 130/381 (34%), Positives = 210/381 (55%), Gaps = 6/381 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  ++  +   G+ +P+ IQ K I  ++   DV   AQ+GTGKT +F +  L  
Sbjct: 19  FEELTLSKDLLRGIFSYGFERPSAIQQKAIKPIILGKDVLAQAQSGTGKTGTFTIGALQR 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +   R  + +IL P RELA Q+ D  +  G+  N+     IGG   +   +K ++G
Sbjct: 79  IDPNQ---RKTQVIILAPVRELAKQIYDVVKGIGQYLNIEAFCCIGGTSTQETREKCKQG 135

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++I TPGR++D      L    + +LV+DEAD+MLD GF      I  +VP   Q  L
Sbjct: 136 VHIIIATPGRLIDMMKNKYLDATFMRLLVVDEADQMLDQGFSDNFAEILKMVPGDIQIAL 195

Query: 183 FSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT   E+ ++S+ FL +   +I V     T E I   ++A   Q  +K  +L +L ++
Sbjct: 196 FSATFPQEIIELSKQFLREGTAKILVKKEQLTLEGIRQFYIAI-QQEDQKFRVLVELYKN 254

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   I+FCN KK V +L   L  +GF+V  IH  ++Q+ R +++  FK+G  +++V+
Sbjct: 255 L-TVSQSILFCNSKKTVDDLHDKLTAEGFTVSKIHSQMEQKEREQVMQEFKKGAARILVS 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+D+  +  V N++ P   E YIHR+GR GR GR G A  +VA+++   +  +E
Sbjct: 314 TDLMGRGIDVQQLSLVINYEFPRLKEQYIHRVGRAGRYGRKGVAINMVAQQEANLLLEVE 373

Query: 362 KLIEKKVDWLNGDLSSLNPPL 382
           K    K+D +  DL+ +   L
Sbjct: 374 KYYNTKIDEMPKDLAEVEKEL 394


>gi|325103790|ref|YP_004273444.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324972638|gb|ADY51622.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 372

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 132/375 (35%), Positives = 211/375 (56%), Gaps = 11/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61
           F DLG+S + + A+ +   +KPT IQ   IP +L+   D  G AQTGTGKTA+F LP   
Sbjct: 5   FRDLGISEQFIQALEENNIIKPTEIQKLAIPYLLKEGKDFIGQAQTGTGKTAAFGLP--- 61

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADN---FEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +LE+  A  ++ + LIL PTREL  Q+A     F KY      T A+  GG   + Q  +
Sbjct: 62  VLEQIDANSKVIQVLILCPTRELGQQIAKQLFKFTKYSDKKIFTEAVY-GGEKIDIQIGR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+R   +++ TPGR++D   R  + +++++ +++DEAD ML MGF   I  I       R
Sbjct: 121 LKRPTHIVVATPGRLIDLLERKAINLDHVKTIILDEADEMLSMGFKKDIDKILEYTNGQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            T LFSAT+   L  + ++++  P ++E+       E I+H ++        K  LL + 
Sbjct: 181 YTWLFSATIPAALDDIIKSYMDEPFKVEIRKEQLVNENIDHKYMVV--DLKDKLDLLSRF 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+ +++   GI+FC  KKN   L   L  + F V AIHG++ QR R K++  FK   + +
Sbjct: 239 LK-ENSKARGIVFCRTKKNAELLSKQLYARNFKVEAIHGDMGQRDREKVMRAFKSERLPI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D++ARG+D+ ++ +V ++D+P++ E Y HR GRT R GR G +   +A  DI  + 
Sbjct: 298 LIATDISARGIDVQNLNYVIHYDLPDQMEYYTHRSGRTARGGRKGLSLIFIAPNDIDKVK 357

Query: 359 AIEKLIEKKVDWLNG 373
            +E  +  K+   N 
Sbjct: 358 DLEANLNIKIRNFNS 372


>gi|145540724|ref|XP_001456051.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423861|emb|CAK88654.1| unnamed protein product [Paramecium tetraurelia]
          Length = 660

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 136/380 (35%), Positives = 216/380 (56%), Gaps = 32/380 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ ++ L   ++ ++ +  YVKPTPIQ++TIP+ L+R D+ GIA TG+GK+A+F++P++T
Sbjct: 236 EWNEVQLPKNLMNSIRNLNYVKPTPIQMQTIPIGLERKDMIGIAPTGSGKSAAFLIPLIT 295

Query: 62  IL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L     +  +     P  LI+ P RELA Q+   F+K  + YNL   +++GG   E Q 
Sbjct: 296 YLSTLPKQDDKICKDGPYALIMAPARELAIQIEAEFQKLSQGYNLRSFVIVGGRKEEEQE 355

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF---IPYI-QNITS 172
             L++G ++LI TPGRI D   +  L++     +V+DEAD+M+D+GF   + YI  +IT+
Sbjct: 356 FHLKKGIEILIGTPGRIKDLLMKKYLVLEQCSWIVLDEADKMIDLGFEQDVNYILDSITT 415

Query: 173 LVPFT-------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
            +                      R T LFSATM  +++K+++ +L+    I +  P   
Sbjct: 416 QMKSEDEIAAELEEKLAQAGERQYRVTHLFSATMPPQVEKLAKRYLRAFCFISIGEPGGG 475

Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            + IE   +    + +KK  LLQ L  ++  +   IIF NQKK+V  L  +LEK G++  
Sbjct: 476 KKDIEQK-IDMINEAAKKNRLLQLLASNKPPI---IIFANQKKSVEILSKTLEKYGYNSV 531

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
             HG+  Q+ R   +  FK   I +++A+DLA+RGL +  V  V NFD P   +++IHR 
Sbjct: 532 VYHGSKTQQQREAAVEGFKSKKIDILIATDLASRGLHVEGVQMVINFDAPKNIQDFIHRT 591

Query: 334 GRTGRAGRHGKAFTLVAKED 353
           GRTGRAG+ G A T +   D
Sbjct: 592 GRTGRAGKRGLAVTFLTNSD 611


>gi|145588844|ref|YP_001155441.1| DEAD/DEAH box helicase domain-containing protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047250|gb|ABP33877.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 500

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 136/390 (34%), Positives = 221/390 (56%), Gaps = 20/390 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L+  ++  V + G+ + T +Q + IP  L   D+   +QTG+GKTA+F+LP++ 
Sbjct: 20  EFQNFALAASLLKNVAELGFTQATSVQAQVIPAALAGGDLLVSSQTGSGKTAAFLLPLIN 79

Query: 62  ILEK---------GRARVRMPRTLILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIP 111
            L +         GRA+   P+ L+L PTRELA QVA D          + +A ++GG+P
Sbjct: 80  QLIEDNPNNSPVPGRAQ---PKVLVLCPTRELAQQVAADAVNLVRGMKGIRIATVMGGMP 136

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +  Q + L +GA +++ TPGR+LD  +   + +++++ LVIDEADRMLDMGF   ++ I 
Sbjct: 137 YGKQIQAL-KGALLVVATPGRLLDLCDSKAIRLDDVKQLVIDEADRMLDMGFADDLEAID 195

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSK 230
                  QTL+FSAT   ++  ++     + KRIE+         IE      +A   S 
Sbjct: 196 KRCAGRNQTLMFSATFAPKIMSLANELTTDAKRIELAHAGEKHANIEQKL--HWADSMSH 253

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K  LL+ +L +  T+   ++F + +     +  +L   G+   A+HG + Q  RM+ L +
Sbjct: 254 KHKLLEHIL-ADATLDQAVVFASTQVESEKIADTLRANGYEASALHGAMPQAVRMRRLES 312

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
            ++G  +++VA+D+AARG+D+P + HV NF +P + E+Y HRIGRTGRAGR+G A TLV 
Sbjct: 313 LRKGHTKILVATDVAARGIDVPRISHVINFGLPMKPEDYTHRIGRTGRAGRNGVAITLVE 372

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNP 380
             D   I  IE+  ++  D +   ++ L P
Sbjct: 373 HRDRAKIRNIERFTQQ--DIVASVIAGLEP 400


>gi|226291622|gb|EEH47050.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28
           [Paracoccidioides brasiliensis Pb18]
          Length = 443

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 208/386 (53%), Gaps = 39/386 (10%)

Query: 3   FADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +A+ GL PK + +++D  GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 4   WAESGL-PKRLLSIIDKVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 62

Query: 62  IL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +       E    R   P  +IL PTRELA Q+    +K+       V  ++GG   E 
Sbjct: 63  YIGELPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAKKFSTPLGFNVVSIVGGHSLEE 122

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  ++++    +++DEADRM+D+GF   +  I   +
Sbjct: 123 QAYSLRNGAEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 182

Query: 175 PFT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNT 209
           P                           RQT++++ATM   +++++  +L+ P  + +  
Sbjct: 183 PVANEKPDTEDAENPQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 242

Query: 210 PSSTAETIEHC--FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
                +T+E    FV+   +  K+ A   ++L S++     I+F N K+N   +   ++ 
Sbjct: 243 VGEAVDTVEQRVEFVSGEDKRKKRLA---EILASREFRPPIIVFVNIKRNCDAVARDIKN 299

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            G+S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E
Sbjct: 300 MGYSSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIE 359

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKED 353
           +Y HRIGRTGRAG+ G A T +  ED
Sbjct: 360 SYTHRIGRTGRAGKSGVAITFLGNED 385


>gi|145502420|ref|XP_001437188.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404337|emb|CAK69791.1| unnamed protein product [Paramecium tetraurelia]
          Length = 395

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 130/381 (34%), Positives = 210/381 (55%), Gaps = 6/381 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  ++  +   G+ +P+ IQ K I  ++   DV   AQ+GTGKT +F +  L  
Sbjct: 19  FEELTLSKDLLRGIFSYGFERPSAIQQKAIKPIILGKDVLAQAQSGTGKTGTFTIGALQR 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +   R  + +IL P RELA Q+ D  +  G+  N+     IGG   +   +K ++G
Sbjct: 79  IDPNQ---RKTQVIILAPVRELAKQIYDVVKGIGQYLNIEAFCCIGGTSTQETREKCKQG 135

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++I TPGR++D      L    + +LV+DEAD+MLD GF      I  +VP   Q  L
Sbjct: 136 VHIIIATPGRLIDMMKNKYLDATFMRLLVVDEADQMLDQGFSDNFAEILKMVPGDIQIAL 195

Query: 183 FSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT   E+ ++S+ FL +   +I V     T E I   ++A   Q  +K  +L +L ++
Sbjct: 196 FSATFPQEIIELSKQFLREGTAKILVKKEQLTLEGIRQFYIAI-QQEDQKFRVLVELYKN 254

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   I+FCN KK V +L   L  +GF+V  IH  ++Q+ R +++  FK+G  +++V+
Sbjct: 255 L-TVSQSILFCNSKKTVDDLHDKLTAEGFTVSKIHSQMEQKEREQVMQEFKKGAARILVS 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+D+  +  V N++ P   E YIHR+GR GR GR G A  +VA+++   +  +E
Sbjct: 314 TDLMGRGIDVQQLSLVINYEFPRLKEQYIHRVGRAGRYGRKGVAINMVAQQEANLLLEVE 373

Query: 362 KLIEKKVDWLNGDLSSLNPPL 382
           K    K+D +  DL+ +   L
Sbjct: 374 KYYNTKIDEMPKDLAEVEKEL 394


>gi|32363501|sp|P44922|RHLB_HAEIN RecName: Full=ATP-dependent RNA helicase rhlB
          Length = 415

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 139/372 (37%), Positives = 214/372 (57%), Gaps = 10/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   +    +   PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 71  LLTHQDPNLKYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQAI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P    
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           R T+LFSAT++ ++++++   +  P+ IE+     T   I E  F   Y     K ALL 
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNEPEYIEIEPEQKTGHRIKEELF---YPSNQDKMALLL 247

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ +   +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G +
Sbjct: 248 TLMEDE-WPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDL 306

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   +
Sbjct: 307 DILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMN 366

Query: 357 IDAIEKLIEKKV 368
           + AIE+ I   +
Sbjct: 367 LPAIEEYIGHSI 378


>gi|320590131|gb|EFX02574.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 713

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 132/343 (38%), Positives = 197/343 (57%), Gaps = 21/343 (6%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--------------ILE 64
           A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+                 
Sbjct: 236 AHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFITGPSVVPNGQAGN 295

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
            GR R   P +LIL PTREL +Q+ +   K+     +   ++ GG    +Q +++ERG D
Sbjct: 296 FGRQRKAYPTSLILAPTRELVSQIYEESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 355

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--VPFT--RQT 180
           +L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P I+ I     +P    RQT
Sbjct: 356 LLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPGVNERQT 415

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT   ++Q ++ +FL++   + V    ST+E I       Y + + K ++L  +L 
Sbjct: 416 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQ--KVEYVEDNDKRSVLLDILH 473

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       +IF   K+   +L   L  Q F   +IHG+  QR R + L  F+ G   ++V
Sbjct: 474 THGAGLT-LIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILV 532

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           A+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G
Sbjct: 533 ATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTG 575


>gi|148706200|gb|EDL38147.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_a
           [Mus musculus]
          Length = 639

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 138/393 (35%), Positives = 221/393 (56%), Gaps = 25/393 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+
Sbjct: 161 NFSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 220

Query: 62  -------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 221 QIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 280

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 281 YGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 340

Query: 167 IQNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 341 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 400

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             + +   K + L  LL +       ++F   KK   +L + L ++ ++  +IHG+  Q+
Sbjct: 401 --WVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQK 458

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 459 DREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 518

Query: 343 GKAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
           G A +   + ++    D ++ L+E K +   WL
Sbjct: 519 GLATSFFNERNLNITKDLLDLLVEAKQEVPSWL 551


>gi|25141235|ref|NP_036138.1| ATP-dependent RNA helicase DDX3Y [Mus musculus]
 gi|73620958|sp|Q62095|DDX3Y_MOUSE RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName:
           Full=D1Pas1-related sequence 1; AltName: Full=DEAD box
           protein 3, Y-chromosomal; AltName: Full=DEAD-box RNA
           helicase DEAD2; Short=mDEAD2
 gi|3790186|emb|CAA07483.1| DBY protein [Mus musculus]
 gi|18204785|gb|AAH21453.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [Mus musculus]
 gi|148706201|gb|EDL38148.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_b
           [Mus musculus]
          Length = 658

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 138/393 (35%), Positives = 221/393 (56%), Gaps = 25/393 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+
Sbjct: 180 NFSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 239

Query: 62  -------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 240 QIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 299

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 300 YGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 359

Query: 167 IQNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 360 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 419

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             + +   K + L  LL +       ++F   KK   +L + L ++ ++  +IHG+  Q+
Sbjct: 420 --WVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQK 477

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 478 DREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 537

Query: 343 GKAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
           G A +   + ++    D ++ L+E K +   WL
Sbjct: 538 GLATSFFNERNLNITKDLLDLLVEAKQEVPSWL 570


>gi|195474630|ref|XP_002089594.1| GE19181 [Drosophila yakuba]
 gi|194175695|gb|EDW89306.1| GE19181 [Drosophila yakuba]
          Length = 782

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 141/395 (35%), Positives = 217/395 (54%), Gaps = 12/395 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP L  
Sbjct: 159 FYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLER 218

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +      + R L+L PTREL AQV    ++  +  ++ V L IGG+  +AQ   L +
Sbjct: 219 LLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQ 278

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I +    TRQT
Sbjct: 279 NPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQT 338

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM+++++ ++   L  P ++ VN     A  +   F+            +   L 
Sbjct: 339 MLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLI 398

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F   KK    L   L   G     +HGN+ Q+ R++ L  FKE  I +++
Sbjct: 399 CRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLI 458

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  I
Sbjct: 459 ATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDI 518

Query: 361 EKLIEKK----------VDWLNGDLSSLNPPLEKI 385
            K  E            ++     L+SL P ++ I
Sbjct: 519 IKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNI 553


>gi|223056241|gb|ACM80366.1| vasa [Patiria miniata]
          Length = 730

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 134/378 (35%), Positives = 215/378 (56%), Gaps = 24/378 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +  L P+V C V+ A Y KPTP+Q   IP++    D+   AQTG+GKTA+F+LP++  
Sbjct: 280 FEESTLCPEVKCNVVKAKYSKPTPVQKYGIPIISGGRDLMACAQTGSGKTAAFLLPIING 339

Query: 62  ILEKGR-----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +L  G      +  + P+ +I+ PTREL +Q+ +   K+ +   L   ++ GG     Q 
Sbjct: 340 MLSDGVTGSSFSEFQEPQCIIVSPTRELTSQIYNEAYKFARGTMLRPVVIYGGTSVGHQL 399

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +++ +G  +L+ TPGR++D  NRG++ ++  + LV+DEADRMLDMGF P ++ +  L   
Sbjct: 400 REVGKGCHLLVATPGRLMDFINRGRIKVSKCKYLVLDEADRMLDMGFGPEMEKLIYLPDM 459

Query: 177 ----TRQTLLFSATMTDELQKVSENFLQNP-----KRIEVNTPSSTAETIEHCFVATYAQ 227
                RQ L+FSAT   E+Q+ +  +L++       R+   TP  T   IE        +
Sbjct: 460 PKKGERQCLMFSATFPQEVQQKAAEYLEDYLFLTVGRVGGATPDITQTIIE------VGK 513

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
           Y KK  L + L+ + D  +  ++F   K+    L   L ++     +IHG+ +QR R + 
Sbjct: 514 YDKKEKLSEMLMNNPD--ERTLVFTETKRGADFLATCLCQESLPATSIHGDREQREREEA 571

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L++F+ G  ++ VA+ +AARGLDI  V HV N+D+P+  E Y+HRIG TGR G  GKA +
Sbjct: 572 LADFRSGRARISVATSVAARGLDISGVKHVVNYDMPSSIEEYVHRIGWTGRVGNLGKATS 631

Query: 348 LV-AKEDIKHIDAIEKLI 364
              A  D ++  A+ K++
Sbjct: 632 FYDAMSDSQNARALIKIL 649


>gi|115453811|ref|NP_001050506.1| Os03g0566800 [Oryza sativa Japonica Group]
 gi|122246919|sp|Q10I26|RH34_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 34
 gi|13957631|gb|AAK50586.1|AC084404_11 putative translation initiation factor [Oryza sativa Japonica
           Group]
 gi|108709369|gb|ABF97164.1| Eukaryotic initiation factor 4A-3, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113548977|dbj|BAF12420.1| Os03g0566800 [Oryza sativa Japonica Group]
          Length = 404

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 202/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G+   ++  +   G+ KP+ IQ + +  ++   DV   AQ+GTGKT+   L +  I
Sbjct: 33  FDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQI 92

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + LIL PTRELAAQ        G   N+ V   IGG       +KLE G
Sbjct: 93  VDTA---VREVQALILSPTRELAAQTERVMLAIGDYINIQVHACIGGKSIGEDIRKLEHG 149

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++L++DEAD ML  GF   I ++   +P   Q  L
Sbjct: 150 VHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQVCL 209

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 210 ISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL- 268

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   +    F+V A+HG++ Q+ R  I+  F+ G  +++
Sbjct: 269 ----TITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVL 324

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V KEDI+ +  
Sbjct: 325 ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILRD 384

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 385 IEQYYSTQIDEMPMNVADL 403


>gi|127513380|ref|YP_001094577.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126638675|gb|ABO24318.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 460

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 209/387 (54%), Gaps = 15/387 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F+D  L  +++ ++   G   PT IQ ++IP+ L   D+   ++TG+GKT +F+LP M
Sbjct: 14  LQFSDFSLDKRLLTSLEHMGIDTPTEIQTQSIPVGLSGRDLMASSKTGSGKTLAFLLPAM 73

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++       R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 74  QRVIATKALSKRDPRVLILLPTRELATQVYSQLRLLVANTQYKAIKILGGENFNDQAKAL 133

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGR+ DH  +  L +N +E+L++DEADRMLD+GF   ++ I       R 
Sbjct: 134 ARDPHFVVATPGRLADHLAQRHLYLNGLELLILDEADRMLDLGFAEQLRAINQAADHKRR 193

Query: 179 QTLLFSATMT-DELQKVSENFLQNPKRIEVNTP----SSTAETIEHCFVATYAQYSKKCA 233
           QTL+FSAT+   ++ +++   L+ P+ + +          A+ I  C        S K  
Sbjct: 194 QTLMFSATLDHGQINEIAAELLKEPEHVAIGASHVENQDIAQKIYLC-----DNLSHKEQ 248

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL +LLQ +   K  IIF   + +   L   L +QGFS  ++ G + Q +R +I+  F  
Sbjct: 249 LLTRLLQLE-PHKQVIIFTATRGDTDRLAGVLAEQGFSTSSLSGELKQAARNQIMDQFSR 307

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G  Q++V +D+A+RGLD+ +V  V NFD+P  AE YIHRIGRTGRAG  G A +LV  +D
Sbjct: 308 GQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYIHRIGRTGRAGAKGDAISLVGPKD 367

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNP 380
             +   ++  + K  ++   +L  L P
Sbjct: 368 WVNFKQVQNFLRKSFEF--SELEELAP 392


>gi|148906285|gb|ABR16298.1| unknown [Picea sitchensis]
          Length = 802

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 135/381 (35%), Positives = 212/381 (55%), Gaps = 12/381 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +D + L LS ++V A+ + G     PIQ   +   L+  D+ G A+TGTGKT +F +P++
Sbjct: 144 LDLSGLNLSQELVEALANRGITHLFPIQRAVLVPALEGRDLIGRAKTGTGKTLAFGIPII 203

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L K        R   R+PR L+L PTRELA QV   F++      L+ A + GG+ + 
Sbjct: 204 ERLTKDNKENKLLRQSRRLPRVLVLAPTRELAKQVEKEFKESAPF--LSTACIYGGVSYV 261

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           +Q   L RG DV++ TPGRI+D  N   L +N ++ LV+DEAD+ML +GF   ++ I   
Sbjct: 262 SQQNALARGVDVVVGTPGRIIDLVNSKSLKLNEVQFLVLDEADQMLAVGFEEDVEIILDN 321

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
           +P  RQ++LFSATM   ++K+S   L NP  I++        AE I+   VAT    + K
Sbjct: 322 LPAERQSMLFSATMPGWVKKLSRKHLNNPMTIDLVGENEEKLAEGIKLYAVATTTSSNSK 381

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
            ++L  L+         I+F   K++   +   L     +  A+HG+I Q  R + L+ F
Sbjct: 382 RSILGDLITVFAKGGKTIVFTQTKRDADEISLGLSST-IACEALHGDISQHQRERTLAGF 440

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +EG    +VA+D+AARGLDI +V  V +++ PN  E ++HR GRTGRAG+ G A  +   
Sbjct: 441 REGKFSALVATDVAARGLDITNVDLVIHYEFPNDPETFVHRSGRTGRAGKEGIAILMYPS 500

Query: 352 EDIKHIDAIEKLIEKKVDWLN 372
              + + ++E  +  + +++N
Sbjct: 501 NGKRKVRSLEHEVGCRFEYIN 521


>gi|88858193|ref|ZP_01132835.1| ATP-dependent RNA helicase, DEAD box family protein
           [Pseudoalteromonas tunicata D2]
 gi|88819810|gb|EAR29623.1| ATP-dependent RNA helicase, DEAD box family protein
           [Pseudoalteromonas tunicata D2]
          Length = 416

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 128/341 (37%), Positives = 191/341 (56%), Gaps = 6/341 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL+  +   VL  GY  PT IQ  +I  VL   D   IA TGTGKTA+++LP L  
Sbjct: 4   FAELGLNKTLQANVLSLGYKSPTYIQEHSIGAVLSGTDTYAIAPTGTGKTAAYLLPTLQE 63

Query: 63  LEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L +      +VR  R L L PTRELA QV ++  KYGK  NL    + GG+   +Q  + 
Sbjct: 64  LSRVDNSAEQVRPVRALFLVPTRELAVQVEESIAKYGKGLNLRTISVFGGVRIPSQVNRF 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGAD+++ TP R++D        +  ++  V+DEADR++ MG +  ++ I + +P  +Q
Sbjct: 124 KRGADIVVATPRRLVDLLKVKAFSLEQVKHFVMDEADRLVSMGIVAELRTILAAMPQAKQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT +  LQK + + L NPK +  +      + I H     +  +  +  L    L
Sbjct: 184 QILFSATDSKALQKFAADNLVNPKEVRTDDSKPALDKIIHTMYRCHRDHKPENLLSLINL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + D   + +IF   KK+V  L H L  +G+S   IH  I Q+ R   L++FK   +Q +
Sbjct: 244 VNCD---HALIFARTKKDVTFLTHLLNSKGYSSVGIHNEIPQKQRQVSLNSFKNREVQFL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           VA+D+ +RG+DI D+ +V NFD+P    +YIHR+GRT R  
Sbjct: 301 VATDIVSRGIDITDLYYVINFDLPVNCNDYIHRVGRTARTA 341


>gi|294811208|ref|ZP_06769851.1| Putative DEAD-box RNA helicase [Streptomyces clavuligerus ATCC
           27064]
 gi|326439836|ref|ZP_08214570.1| putative DEAD-box RNA helicase [Streptomyces clavuligerus ATCC
           27064]
 gi|294323807|gb|EFG05450.1| Putative DEAD-box RNA helicase [Streptomyces clavuligerus ATCC
           27064]
          Length = 574

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 134/389 (34%), Positives = 203/389 (52%), Gaps = 6/389 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFADL +   ++  +   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L 
Sbjct: 40  DFADLDMPTGLLATLTSQGVTTPFPIQAATLPNALAGRDVLGRGRTGSGKTLAFGLAVLA 99

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                RA  R P  L+L PTRELA QV D    Y    NL +A  +GG+    Q   L R
Sbjct: 100 RTAGLRAESRAPLALVLVPTRELAQQVTDAMAPYATAVNLRLATAVGGLSITKQAGALRR 159

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G +VL+ TPGR+ D  +RG  +++ + I V+DEAD+M DMGF+P I  +   V    Q L
Sbjct: 160 GTEVLVATPGRLNDLVDRGDCVLDQVRITVLDEADQMTDMGFLPQITKVIQQVRPDGQRL 219

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   + ++ + FL +P    V+  +    T+EH  +    +  KK   ++  + +
Sbjct: 220 LFSATLDHNIDRLVQRFLTDPVVHSVDPSAGAVSTMEHHVLHILDETDKKAVTVR--IAA 277

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I+F + K++   L   L   G    A+HG   Q  R + L  FK G +  +VA
Sbjct: 278 RDGRV--ILFLDTKRSADRLAKRLLASGVRAAALHGGRTQPQRNRTLEQFKNGQVTALVA 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +++AARG+ + D+  V N D P+  ++Y+HR GRT RAG  G   TLV  E  + +  + 
Sbjct: 336 TNVAARGIHVDDLDLVVNVDPPSDHKDYLHRGGRTARAGGSGSVVTLVLPEQKREVTRL- 394

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
            + +  +      ++S +P L  I  A+ 
Sbjct: 395 -MSDAGIRPRTARVTSSDPELSTITGARE 422


>gi|209877927|ref|XP_002140405.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209556011|gb|EEA06056.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 680

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 135/346 (39%), Positives = 201/346 (58%), Gaps = 20/346 (5%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-LTILEKGR-----------A 68
           Y +PTP+Q  +IP VL   D+   AQTG+GKTA+F+ P+ + +L+ G             
Sbjct: 218 YERPTPVQKFSIPTVLNGRDLMACAQTGSGKTAAFLFPIIMRMLKDGPPPTPQQSSLRIK 277

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
           RV  P  L+L PTRELA Q+ +   K+     +   +L GG     Q   L+RG+D+++ 
Sbjct: 278 RVAYPVALVLSPTRELAIQIYEESRKFCYGTGIRTNVLYGGSEIRNQILDLDRGSDIVVA 337

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT--SLVPFT---RQTLLF 183
           TPGR+ D  +RGK+ +  I+ L++DEADRMLDMGF P I+ I   S +P +   RQT++F
Sbjct: 338 TPGRLRDLIDRGKVYLKLIKFLILDEADRMLDMGFAPQIREIIEDSDMPHSLEGRQTVMF 397

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT   E+Q+++++FL +   + V    +T+ +I    V  YA+   K  LL +LL  Q 
Sbjct: 398 SATFPREIQQLAKDFLHSYIFLTVGRVGATSGSIVQRVV--YAEEDHKPRLLVKLLMEQG 455

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
                ++F   K+    +   L  Q F   +IHG+  Q+ R   L  F+ G   ++VA+D
Sbjct: 456 EGLT-VVFVEMKRRADQIEDFLIDQNFPAVSIHGDRSQQEREHALRLFRSGQRPILVATD 514

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +AARGLDIP++ HV N D+P   ++Y+HRIGRTGRAG  G A + V
Sbjct: 515 VAARGLDIPNITHVINLDMPCNIDDYVHRIGRTGRAGNTGLATSFV 560


>gi|308276378|gb|ADO26277.1| Putative Superfamily II DNA and RNA helicase [Corynebacterium
           pseudotuberculosis I19]
          Length = 450

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 149/450 (33%), Positives = 232/450 (51%), Gaps = 20/450 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGL   +V  +   G   P PIQ   IP  L+  DV G   TG+GKT +F LPM+  
Sbjct: 4   FSDLGLPVSIVHVLNRQGITAPFPIQEAAIPDALKGRDVLGRGPTGSGKTFTFGLPMIAA 63

Query: 63  LEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L K G +    PR LIL PTRELAAQV +  ++      L +  ++GG+           
Sbjct: 64  LAKTGASLPGHPRGLILVPTRELAAQVRERLDEPAAALGLRILDVVGGVSINRHITAFAA 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+L+ TPGR  D  N  KL ++ + I  +DEAD+M DMGF+P +  +  L P   Q L
Sbjct: 124 PVDILVATPGRAQDLVNNKKLFLDKVLITTLDEADQMADMGFLPQVLKLLELTPRDAQRL 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ K+ E F+ +P        ++  +T+ H  +    + S+   +L+   + 
Sbjct: 184 LFSATLDGDVNKLVERFMHDPVTHSTAEVAAAVDTMTHYRLHVGDRDSRNDVVLRIAGRI 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I+F   K  V      L + G +   IHG+ DQ +R   ++ F +G++ ++VA
Sbjct: 244 GKT----IMFMRTKHGVDRQVKKLRRIGINAVGIHGDKDQNTRTNAITGFSDGSVPVLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI DV  V + D P   + Y+HR GRT RAG  G   TLV +E I+ +D + 
Sbjct: 300 TDIAARGIDIGDVDLVVHVDPPAEHKAYLHRAGRTARAGSSGTVVTLVMEEQIQEVDTL- 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI----PQKSTGFDRRKKNYSSQK 417
            L +  V+  + ++S+ +P L  I  AQ        P     PQ+     R+KK+ S++ 
Sbjct: 359 -LHKAGVNAESLEVSANSPELVHITGAQKITGEPLPPFGAAQPQQ-----RQKKSQSTKN 412

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRG 447
           S    ++ ++    Q+   ++   +  FRG
Sbjct: 413 SATRRRKPQR----QRTASKSRGSAASFRG 438


>gi|74181660|dbj|BAE32549.1| unnamed protein product [Mus musculus]
          Length = 658

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 138/393 (35%), Positives = 221/393 (56%), Gaps = 25/393 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+
Sbjct: 180 NFSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 239

Query: 62  -------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 240 QIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 299

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 300 YGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 359

Query: 167 IQNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 360 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 419

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             + +   K + L  LL +       ++F   KK   +L + L ++ ++  +IHG+  Q+
Sbjct: 420 --WVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQK 477

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 478 DREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 537

Query: 343 GKAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
           G A +   + ++    D ++ L+E K +   WL
Sbjct: 538 GLATSFFNERNLNITKDLLDLLVEAKQEVPSWL 570


>gi|313114933|ref|ZP_07800430.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622755|gb|EFQ06213.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 395

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 124/364 (34%), Positives = 211/364 (57%), Gaps = 7/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M +++L  S  +  AV   G+ + T IQ KTIP+++  +DV   A TGTGKT +F +P  
Sbjct: 1   MLYSELQCSDAIHKAVERMGFAEMTEIQEKTIPVMMAGYDVIAKAPTGTGKTCAFGIP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
            + E      + P+ +I+ PTRELA Q+A   E+       + VA + GG   E Q K+L
Sbjct: 59  -VAEHILPENKYPQAVIMAPTRELAQQIAQELEELTYFMPEVQVACVYGGANMEKQAKRL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  +++ TPGR++DH+    + ++++  +V+DEAD ML+MGF   +++I  ++   + 
Sbjct: 118 AEGCQIVVATPGRLMDHYKHHSIDISHVTQIVLDEADEMLNMGFYKDVRHIIEMMKARKS 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +FSAT++ E+  +   +  N + I V     +   I    + T  +   K + L Q++
Sbjct: 178 LSMFSATISREVMDIGWLYQHNAEEITVQPKEESQPKITQYMLETSGR--NKLSDLAQII 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  ++FC+ K N   L + L + GFSV  +HG++ Q+ R +I+ NF++G + ++
Sbjct: 236 IGEN-YKRVMVFCDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQNFRDGKLAIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  V N+DVP+  E+Y HRIGRTGRA + G ++     E+ K +  
Sbjct: 295 VATDVAARGIDVSDVDAVINYDVPSENEHYTHRIGRTGRAKKEGVSYLFYVPEEKKRVQE 354

Query: 360 IEKL 363
           + +L
Sbjct: 355 LLRL 358


>gi|256087842|ref|XP_002580072.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665577|emb|CAZ36311.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 454

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 146/410 (35%), Positives = 227/410 (55%), Gaps = 22/410 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG+  ++   +   G+VKP+ IQ+K IP  L++ D+ G+A+TG+GKTA+F +P   I
Sbjct: 6   FKELGVCNEICDVISTLGWVKPSEIQLKAIPAALRKKDIVGLAETGSGKTAAFAIP---I 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER- 121
           L+   ++ R    LIL PTRELA QV   F + G  + L V  L+GG   E Q + L+R 
Sbjct: 63  LQDLLSKPRHNFALILTPTRELALQVKCLFMELGDKFGLKVVCLVGGQHVEDQVRDLKRL 122

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR++ H  N  +L +N++   V+DEAD+ML+  F   +  I + +   +QT
Sbjct: 123 KFHVIVGTPGRVVYHLENTKELRLNHVRYFVLDEADQMLEDTFEQQLAFIITKLHPNKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            L+SATMT  + K+ +   ++P  +EV++  S  + ++H FV       K   L+  LL 
Sbjct: 183 FLYSATMTQNVDKIRKVCTKSPVILEVSSKYSKVDKLDHAFVFI-PDKEKDFYLIYLLLS 241

Query: 241 SQDTMKN-GIIFCNQKKNVVNLCHSLEKQGFSVCA----IHGNIDQRSRMKILSNFKEGT 295
           S+   K+  IIF +  +    +   L+     + A    ++G + Q  R   L +F+ G 
Sbjct: 242 SKSADKSRSIIFTSTWRESFRIVAMLKSLADVISAASAPLNGVMQQDKRQSSLFDFRTGR 301

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNR------AENYIHRIGRTGRAGRHGKAFTLV 349
           + ++VA+DLA+RGLD PDV  V N+DVP R      A+ YIHR+GRT RAGRHG+A T V
Sbjct: 302 VSILVATDLASRGLDFPDVDLVINYDVPRRPSWSDSAKAYIHRVGRTARAGRHGRAITFV 361

Query: 350 AKEDIKHIDAIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHARKN 396
               +  + AIE  + +++    W   D   L+  L +  I     AR N
Sbjct: 362 TPYSVTRLKAIESALNERIPQLPWPGTD--CLDSQLRQQVIQADKEARAN 409


>gi|328865714|gb|EGG14100.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 1076

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 215/369 (58%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   +  AV+  G+ +PTPIQ  TIPL+L+  DV G+A+TG+GKTA+FV+PM+  
Sbjct: 270 FQGMDLHKFLFKAVMKKGFKQPTPIQRLTIPLILEGQDVVGMARTGSGKTAAFVIPMIQK 329

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +   +V   R +IL PTRELA Q     ++     +L   +++GG     Q  +L R 
Sbjct: 330 LAQHSHKV-GARAIILSPTRELALQTYRVVKELSSGSDLRSCVIVGGDNMADQFTELARN 388

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++ H     + ++ ++ +V DEADR+ +MGF   +Q I + +  +RQTLL
Sbjct: 389 PDIIIATPGRLVHHLTEVNMGLHTVQYIVFDEADRLFEMGFADQLQEIITKLSPSRQTLL 448

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L +     L NPK + +NT +  ++ +   F     ++ +K A L  LL  +
Sbjct: 449 FSATLPSMLAEFVRAGLSNPKLVRLNTDTKISDQLSLSFFT--CRHDEKFAALLYLL--K 504

Query: 243 DTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           D +K+    I+F   K +V  L   L++   +   IHG +D  +R   L+ F+   + +M
Sbjct: 505 DIIKDDEPTIVFTATKFHVEYLHILLDQARIANTFIHGQMDPVARKINLAKFRSKVVNVM 564

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +DLAARG+DIP + +V NFD   + + +IHR+GR  RAGR G A++LV+ ++I ++  
Sbjct: 565 VVTDLAARGIDIPMLDNVINFDFAPKEKIFIHRVGRVARAGRKGTAYSLVSPDEIPYMLD 624

Query: 360 IEKLIEKKV 368
           +   I KK+
Sbjct: 625 LHLYIAKKL 633


>gi|320037892|gb|EFW19828.1| ATP-dependent RNA helicase dbp3 [Coccidioides posadasii str.
           Silveira]
          Length = 512

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 134/341 (39%), Positives = 194/341 (56%), Gaps = 9/341 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-PRTLIL 78
           +  PTPIQ  + PL     D+ G+A+TG+GKT +F LP L  +LE   +     P  LI+
Sbjct: 116 FSSPTPIQAVSWPLAFAGRDLIGVAETGSGKTLAFGLPCLRRVLELNNSETSCKPCALII 175

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA Q+ D   ++    ++ +A + GG P + Q +++ R A V+I TPGR+ D   
Sbjct: 176 TPTRELAVQIYDQLLRFSSVVDVGIACIYGGSPKDHQRREI-RNASVVIATPGRLKDFQA 234

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQTLLFSATMTDELQKVSE 196
              + ++ ++ LV+DEADRMLD GF   IQ+I   +P T  RQT++F+AT    ++ ++ 
Sbjct: 235 DQTINLSGVKYLVLDEADRMLDKGFEQDIQDIVKGIPSTQKRQTIMFTATWPIGVRNLAA 294

Query: 197 NFLQNPKRIEVNTPSST-AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG---IIFC 252
           +F +NP  + +   S   A       V     Y K   LL+ L + QD  KN    ++FC
Sbjct: 295 SFTKNPVTVTIGDSSDIRANKRIKQIVEVLQPYEKDSRLLELLRRYQDGAKNNHRILVFC 354

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             KK  + +   +  +GF V  IHG++ Q  R + L  FK G+I L+VA+D+AARGLDIP
Sbjct: 355 LYKKEAMRVERFIGSKGFKVAGIHGDMSQTERFRSLEAFKSGSISLLVATDVAARGLDIP 414

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            V  V N   P   E+Y+HRIGRTGRAG  G A TL  + D
Sbjct: 415 AVKLVLNVTFPLTIEDYVHRIGRTGRAGAEGLAITLFTERD 455


>gi|313221076|emb|CBY31906.1| unnamed protein product [Oikopleura dioica]
          Length = 604

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 124/366 (33%), Positives = 205/366 (56%), Gaps = 5/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G   +++  +   G++ PTPIQ   IP +L   DV GIAQTG+GKTA FV P++  
Sbjct: 231 FGHMGFPDRLLERIRKVGFLDPTPIQSTAIPQILAGRDVIGIAQTGSGKTAGFVWPIIYH 290

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
           + K R       P  LI+ PTREL  Q+     K+ KNY+ + V +  GG+    Q K+L
Sbjct: 291 VTKQRPLKYGDGPMALIMAPTRELCQQLYAEVRKFAKNYDSIRVGICFGGVNMYEQGKEL 350

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++L+ TPGR++DH  +G   ++   I+ +DEADRML++GF P +++I + V   +Q
Sbjct: 351 KMGVEILVATPGRLIDHVKKGNTELSKCTIICLDEADRMLELGFEPQVRSICNHVRPDKQ 410

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSAT    +++++   L +P ++         E +   F     Q  K   LL  ++
Sbjct: 411 CLFFSATFKKVIERLATEVLNDPVKLTQGQIGQVNENVTQNF-KILGQDQKLQWLLGNIV 469

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q  +++ + ++F  +K + V +   L+K GF    IHG++ Q  R  ++  FK   +  +
Sbjct: 470 Q-LNSVGSLLVFVTRKADCVTVHEELKKSGFKTGVIHGDMHQAERNDVIKAFKRQQLATL 528

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  +  V N+D     + ++HR+GRT RAG  G A +L+  +D ++   
Sbjct: 529 IATDVAARGLDISHIKTVINYDPARNYDTHVHRVGRTARAGNTGTAISLLTPQDSEYAGI 588

Query: 360 IEKLIE 365
           + + IE
Sbjct: 589 VLRSIE 594


>gi|294660132|ref|XP_462573.2| DEHA2G23782p [Debaryomyces hansenii CBS767]
 gi|218512022|sp|Q6BGU8|DBP8_DEBHA RecName: Full=ATP-dependent RNA helicase DBP8
 gi|199434486|emb|CAG91086.2| DEHA2G23782p [Debaryomyces hansenii]
          Length = 441

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 139/387 (35%), Positives = 225/387 (58%), Gaps = 24/387 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LG+S  +  A+       PT IQ   IP +L+ HD  G A+TG+GKT +F  PML
Sbjct: 1   MSFEELGVSKWLSEALNSMKIHTPTTIQSACIPKILKGHDCIGGAKTGSGKTIAFAAPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T   +  + +     L+L PTRELA Q+A+ F   G + N+ V++++GG     Q  +L+
Sbjct: 61  TQWSEDPSGIY---GLVLTPTRELALQIAEQFAALGSSMNIKVSVIVGGEDIVKQALELQ 117

Query: 121 RGADVLICTPGRILDH-FNRGK---LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           R    ++ TPGR+ DH  N G+     +  ++ L++DEADR+L   F   ++   +++P 
Sbjct: 118 RRPHFVVATPGRLADHILNSGEDTVCGLRRVKYLILDEADRLLSNSFGGDLERCFNILPS 177

Query: 177 T--RQTLLFSATMTDELQKVSEN---------FLQNPKRIE-VNTPSSTAETIEHCFVAT 224
           T  RQTLLF+AT+TD ++ + +          F+   + ++ V  PS+   ++++ FV +
Sbjct: 178 TDKRQTLLFTATVTDAVRALKDRPVPKGKLPVFIHEVETVDKVAIPSTL--SVKYVFVPS 235

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
           Y + +   ++L  L Q  D++   IIF N+      L  +L K  F V ++H  + Q  R
Sbjct: 236 YVKEAYLHSILN-LPQYSDSL--SIIFTNRTATAELLRRTLRKLEFRVASLHSEMPQTER 292

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
              L  FK G  ++++A+D+A+RGLDIP V  V N+D+P  A+++IHR+GRT RAGR G 
Sbjct: 293 TNSLHRFKAGAAKILIATDVASRGLDIPTVELVVNYDIPADADDFIHRVGRTARAGRKGD 352

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWL 371
           A ++VA++D+  I AIE+ I KK+D +
Sbjct: 353 AISIVAEKDVDRILAIEERINKKMDLI 379


>gi|83816639|ref|YP_444201.1| ATP-dependent RNA helicase [Salinibacter ruber DSM 13855]
 gi|83758033|gb|ABC46146.1| ATP-dependent RNA helicase [Salinibacter ruber DSM 13855]
          Length = 478

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 126/350 (36%), Positives = 200/350 (57%), Gaps = 10/350 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           LS  +  AV  AG+ +   +Q K IP  L   D+   +QTG+GKT +F+LP+  ++   +
Sbjct: 48  LSGHMEQAVHAAGWTELMDVQRKAIPYTLDGRDLIVQSQTGSGKTGAFLLPLFDLVNPDK 107

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYG----KNYNLTVALLIGGIPFEAQNKKLERGA 123
              ++   LIL PTRELA Q+ + FE+      +   +   L+ GG+ ++ Q   L+ GA
Sbjct: 108 EEQQV---LILTPTRELARQIHEEFEQMKIATPRTNRMEAVLIYGGVGYQPQIDGLKNGA 164

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            V+I TPGRILDH  +     + + +LV+DEAD ML MGF P +++I   VP  R + ++
Sbjct: 165 QVVIGTPGRILDHIKKDNFDASTLRMLVLDEADEMLSMGFYPDMKDIVEHVPGDRVSYMY 224

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM  +++ V+  FL +P  + ++T   + E  E+ +         K  ++ QLL+ ++
Sbjct: 225 SATMPPKVRSVAREFLDDPGFLSLSTDKVSVEENEYRYYLVNPM--DKDRVMAQLLELEE 282

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             ++ +IF N K+ V  L   L  +G+ +  + G++ QR R + L   +EG ++L+VA+D
Sbjct: 283 P-ESALIFANTKREVSYLNKFLSNKGYDIDEMSGDLSQRDREEALDRLREGKLRLLVATD 341

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +AARG+D+ D+ HVF +DVP   E  IHR GRT RAG  G    L   ED
Sbjct: 342 VAARGIDVSDLSHVFIYDVPQDHEYIIHRSGRTARAGEEGTTIVLSTHED 391


>gi|300778725|ref|ZP_07088583.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
 gi|300504235|gb|EFK35375.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
          Length = 450

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 209/373 (56%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FAD  L  K++  + D    +PTPIQ K++  +L   DV GIAQTGTGKT +++LP+L
Sbjct: 4   LTFADFDLPVKILDVLADLELFEPTPIQEKSLKPILSGRDVMGIAQTGTGKTLAYLLPVL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +   ++   P  L+L PTREL  QV +  EK  +N    V  + GG     Q     
Sbjct: 64  KTWK--YSKTGNPTVLVLVPTRELVVQVTEILEKLTENITARVIGVYGGKNINTQKLLFN 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGR++D      + +  ++ L+IDE D ML++GF P + +I  ++   RQ 
Sbjct: 122 DGCDILVGTPGRVMDLSIDNAISLKEVQKLIIDEFDEMLNLGFRPQLTHIFEMMKEKRQN 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+ + ++ + +  NP  I +    +  E IE         ++ K  LL+ LL+
Sbjct: 182 ILFSATMTEAVDEMLDVYFANPVEISLAKSGTPLEKIEQIGYKV-ENFNTKINLLEYLLK 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEK---QGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +   M   +IF N KK+   L   +++   + F V  IH N  Q  R+K +  F+   I+
Sbjct: 241 NDADMSKVLIFNNNKKHADLLFTKIDELFPEQFDV--IHSNKSQNYRLKAMKRFENEEIR 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++ +D+ ARGLDI ++ HV NF+ P+  E YIHRIGRTGRA + GKA   V K++   I
Sbjct: 299 GLITTDVMARGLDISNITHVINFETPDIPEQYIHRIGRTGRADKEGKALVFVTKKEEPLI 358

Query: 358 DAIEKLIEKKVDW 370
             IE L++K++ +
Sbjct: 359 LDIELLMDKELKF 371


>gi|308160612|gb|EFO63089.1| ATP-dependent RNA helicase [Giardia lamblia P15]
          Length = 625

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 162/482 (33%), Positives = 240/482 (49%), Gaps = 54/482 (11%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M +  L LS ++  AVL  G+  PTP+Q K IP+VL   D    A TG+GKT +F +P+L
Sbjct: 1   MSWQGLSLSRQLTRAVLRLGWKFPTPVQEKVIPIVLAGRDALVSAVTGSGKTGAFGIPLL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++ +GR        LIL PTRELAAQ A   ++     N  V LLIGG     Q  +L
Sbjct: 61  ERMILRGRDTYGTT-ALILSPTRELAAQTAAVLQELAYFTNFRVYLLIGGTDTARQAAQL 119

Query: 120 ERGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
               D+++ TPGR++D   N     ++ IE+LV+DE D+MLD+GF   ++ I +L P  R
Sbjct: 120 RTEPDIIVATPGRLIDLVRNTVNFSLDTIEVLVLDEGDKMLDIGFHDELKEICALCPIAR 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC------ 232
           QTLLFSAT+  E+   S   LQ P +++++ P + A+TI   FV       +KC      
Sbjct: 180 QTLLFSATIEKEVLSFSLLALQKPLQVQIDPPRTVAQTITQEFVMVTPTLLRKCTEKFKN 239

Query: 233 --------------------ALLQQLLQSQDTMKNGIIFCNQKKNVVN---LCHSLEKQ- 268
                               ALL+    S+D+    ++FCN K+ V     L   L KQ 
Sbjct: 240 EDSSLKSSTLSAIARDILLVALLRNNFSSEDSQHKIMVFCNSKREVRRVFILLDMLSKQP 299

Query: 269 ----------GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
                     G     +HG+  Q+ R   L  F+ G I L+V SD+A+RGLDI +V  V 
Sbjct: 300 EDTTRSCLLAGIRPSCLHGDSSQKERATELDRFRSGDINLLVCSDVASRGLDIENVTVVI 359

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            +D P   + +IHR+GRTGRA   G + T V      H ++ E+ + K++     + +  
Sbjct: 360 QYDFPLSLDIHIHRVGRTGRADAPGTSITFV------HDNSQEQGVLKEIQDSQKERAKG 413

Query: 379 NPPLE-KID---IAQHNHARKNNPIPQK-STGFDRRKKNYSSQKSHIPLKESEKISKLQQ 433
            P  + KID   I    H   +N +P K     DR     + +   I +K++E I + + 
Sbjct: 414 QPLRQRKIDSKLITTVTHYFVHNSVPDKLKRRVDRMNLEMAVKMEEIKIKKAENIMEFKD 473

Query: 434 DI 435
           +I
Sbjct: 474 EI 475


>gi|16272830|ref|NP_439053.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae Rd KW20]
 gi|260579983|ref|ZP_05847813.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae RdAW]
 gi|1573911|gb|AAC22552.1| ATP-dependent RNA helicase (rhlB) [Haemophilus influenzae Rd KW20]
 gi|260093267|gb|EEW77200.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae RdAW]
          Length = 418

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 139/372 (37%), Positives = 214/372 (57%), Gaps = 10/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 14  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 73

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   +    +   PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 74  LLTHQDPNLKYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQAI 133

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P    
Sbjct: 134 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 193

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           R T+LFSAT++ ++++++   +  P+ IE+     T   I E  F   Y     K ALL 
Sbjct: 194 RLTMLFSATLSYKVRELAFEDMNEPEYIEIEPEQKTGHRIKEELF---YPSNQDKMALLL 250

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++ +   +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G +
Sbjct: 251 TLMEDE-WPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDL 309

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   +
Sbjct: 310 DILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMN 369

Query: 357 IDAIEKLIEKKV 368
           + AIE+ I   +
Sbjct: 370 LPAIEEYIGHSI 381


>gi|319778865|ref|YP_004129778.1| ATP-dependent RNA helicase DbpA [Taylorella equigenitalis MCE9]
 gi|317108889|gb|ADU91635.1| ATP-dependent RNA helicase DbpA [Taylorella equigenitalis MCE9]
          Length = 457

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 131/370 (35%), Positives = 204/370 (55%), Gaps = 7/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L LS   +  +   G+++  P+Q +++P +L+  DV  +A+TG+GKT +F    L 
Sbjct: 3   NFSELPLSESQISILSSLGFIQMRPVQARSLPHILEGSDVRTLAKTGSGKTLAF---GLG 59

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           I++K        + L+L PT ELA QVA    K  +   N+ V  L GG+    Q + L+
Sbjct: 60  IIQKINPSFFACQGLVLTPTHELADQVAQEIRKLARALPNIKVLTLCGGVALRPQIESLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRILD   RG L ++ +++ V+DE DRMLDMGF   I  I+   P  +QT
Sbjct: 120 HGAHIIVGTPGRILDLIQRGDLDLSKVKVFVLDECDRMLDMGFFDDIGEISKATPLRKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + ++K+SE F +NP  IE+         ++H F  T    S++ A   Q+L+
Sbjct: 180 LLFSATFPEHIKKISEGFQRNPVHIELIEEEKVPTNLDHIFFKTSD--SERFAHSVQILK 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   + FCN +     L   L +Q  S   +HG +++R R  +L  F   ++ ++V
Sbjct: 238 HYQPIST-LAFCNTRTQCEKLSSFLNEQNISSKFLHGEMEKREREDVLLQFSNKSLSVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N ++      +IHRIGRTGR    G  F LV  E++   D I
Sbjct: 297 ATDVAARGLDIEGLDAVLNIELSPNVPTHIHRIGRTGRHSDRGLVFNLVTPEEMYRFDRI 356

Query: 361 EKLIEKKVDW 370
           +  I  +  W
Sbjct: 357 DAQIPLESKW 366


>gi|54301892|ref|YP_131885.1| ATP-dependent RNA helicase DbpA [Photobacterium profundum SS9]
 gi|46915312|emb|CAG22085.1| putative ATP-dependent RNA helicase DbpA [Photobacterium profundum
           SS9]
          Length = 462

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 210/367 (57%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L   ++  +   GY   TPIQ  ++P +L   DV    +TG+GKTA+F L +L  
Sbjct: 6   FSTLNLHADLLKNLTSLGYESMTPIQALSLPHILAGEDVIAQGKTGSGKTAAFGLGLLEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA    K  +  +N+ V  L GG+PF  Q   LE 
Sbjct: 66  LNVKRFRVQ---SLVLCPTRELADQVAKEIRKLARTIHNIKVLTLCGGMPFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI +H  +G L ++++EIL++DEADRML+MGF   +  I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIEEHVRKGTLNLDDLEILILDEADRMLEMGFQDSLDEIIDAAPQRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   +++ V++  +  P   +V +    +   +H +       +++     +LL  
Sbjct: 183 LFSATYPPQIKSVADRIMHKPVMAKVESTHDESTIQQHFY---KVDGNEQRLTALRLLLL 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   ++ ++FCN K+    +   L   GFS  A+HG+++QR R + L  F   +  ++VA
Sbjct: 240 KHRPESTVVFCNTKREAQEVSDDLVDYGFSSIALHGDLEQRERDQALVLFANKSTSVLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N+ +    E ++HRIGRTGRAG  G A +L++ ++   +  +E
Sbjct: 300 TDVAARGLDIDSLDAVINYHLARDTEVHVHRIGRTGRAGSKGIACSLISDKEHYKVAMLE 359

Query: 362 KLIEKKV 368
             +++ +
Sbjct: 360 DYLDRAI 366


>gi|213405989|ref|XP_002173766.1| ATP-dependent RNA helicase Prp11 [Schizosaccharomyces japonicus
           yFS275]
 gi|212001813|gb|EEB07473.1| ATP-dependent RNA helicase Prp11 [Schizosaccharomyces japonicus
           yFS275]
          Length = 1056

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 125/370 (33%), Positives = 210/370 (56%), Gaps = 8/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           ++  GLS + +  +   G+ +P+ IQ + IP +    DV G+A+TG+GKT +F+LPM   
Sbjct: 461 WSQCGLSVQTLSVIRSLGFEEPSAIQAQAIPAITAGRDVIGVAKTGSGKTIAFLLPMFRH 520

Query: 62  ILEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++   R    P  +I+ PTRELA Q+    + + K  +L      GG P + Q  +L+
Sbjct: 521 IMDQRPLRNGEGPVAVIMTPTRELAVQIFRECKPFAKALDLRATCAYGGAPIKDQIAELK 580

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIE---ILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D  N     + N+     +V+DEADRM D+GF P +  I + +   
Sbjct: 581 RGAEIVVCTPGRMIDVLNANSGRVTNLHRCTYVVLDEADRMFDLGFEPQVMRILNNIRPD 640

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV--ATYAQYSKKCALL 235
           RQ +LFSAT    ++ ++   L+ P  I V   S  A  +E      +  +++ +   LL
Sbjct: 641 RQVVLFSATFPRAMEALARKVLKKPIEITVGGRSVVAAEVEQLVEVRSEESKFPRLLELL 700

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +L  +Q  ++  ++F ++ ++   L   L K+G+S  +IHG  DQ  R   +S++K G 
Sbjct: 701 GELYNTQPDVRT-LVFVDRHESADALLSQLMKRGYSCNSIHGGKDQHDRDSTISDYKMGI 759

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +++A+ +AARGLD+  +  V N+D PN  E+Y+HR+GRTGRAG  G A T V  +  +
Sbjct: 760 FDVLIATSVAARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFVTPDQSR 819

Query: 356 HIDAIEKLIE 365
           +   I K ++
Sbjct: 820 YAVGIAKALK 829


>gi|241747700|ref|XP_002414349.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215508203|gb|EEC17657.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 519

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 139/398 (34%), Positives = 218/398 (54%), Gaps = 15/398 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--EKGRARVRMPRTLIL 78
           + +P+PIQ +  P+VL   D+ GIAQTG+GKT ++VLP    +  +    R   P  ++L
Sbjct: 114 FTEPSPIQAQAWPVVLGGRDLVGIAQTGSGKTLAYVLPAAIHMSDQPQPERDEGPIGVVL 173

Query: 79  EPTRELAAQVAD-NFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
            PTREL  Q++   +E  G  + L  A + GG+    Q  +L+ GA + I TPGR+LD  
Sbjct: 174 APTRELVQQISQVAYEWCGGAFRLKGAPVYGGVSKGPQIARLQGGAHICIATPGRLLDIL 233

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
             G + +     LV+DEADRMLDMGF P I+ I       RQT+++SAT   E++ ++E 
Sbjct: 234 ETGAINLLRCSYLVLDEADRMLDMGFEPQIRKIVDQTRPDRQTVMWSATWPSEVRDLAEE 293

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ-SQDTMKNGIIFCNQKK 256
           FL +  +I V +    A       V     + K+  LL+ L + + +  +  +IF   K 
Sbjct: 294 FLTDHVQITVGSEDLCANHNIRQVVHVCQGFEKEEKLLETLREINAEGDQRTLIFVATKA 353

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
            VV +  +L K GF   A HG++ Q  R   L  F+ G   ++VA+D+AARGLD+ D+ +
Sbjct: 354 RVVTIVQNLYKNGFRAVATHGDLSQNKRDIALDRFRSGKTPILVATDVAARGLDVSDIKY 413

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
           V N+D P+ +E+Y+HRIGRTGR+ R G A TL   ++      +  ++++    +N +L 
Sbjct: 414 VINYDYPDTSESYVHRIGRTGRSNRSGTAITLFTPDNAGQAKQLVSVLQEAKQEVNPEL- 472

Query: 377 SLNPPLEKID--IAQHNHARKNNPIPQKSTGFDRRKKN 412
                LE +D  ++Q    R+  P  Q    +DRR ++
Sbjct: 473 -----LELVDRQVSQKFANRRRRPAQQS---WDRRPQH 502


>gi|90409951|ref|ZP_01217968.1| putative ATP-dependent RNA helicase DbpA [Photobacterium profundum
           3TCK]
 gi|90329304|gb|EAS45561.1| putative ATP-dependent RNA helicase DbpA [Photobacterium profundum
           3TCK]
          Length = 462

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 129/367 (35%), Positives = 211/367 (57%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L   ++  +   GY   TPIQ +++P +L   DV    +TG+GKTA+F L +L  
Sbjct: 6   FSTLNLHADLLKNLTSLGYESMTPIQAQSLPHILAGEDVIAQGKTGSGKTAAFGLGLLEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA    K  +  +N+ V  L GG+PF  Q   LE 
Sbjct: 66  LNVKRFRVQ---SLVLCPTRELADQVAKEIRKLARTIHNIKVLTLCGGMPFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI +H  +G L ++++E+L++DEADRML+MGF   +  I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIEEHVRKGTLNLDDLEMLILDEADRMLEMGFQDSLDEIIDAAPQRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   +++ +++  +  P   +V +    +   +H +       +++     +LL  
Sbjct: 183 LFSATYPPQIKSIADRIMFKPVMAKVESTHDDSSIQQHFY---KVDGNEQRLTALRLLLL 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   ++ ++FCN K+    +   L   GFS  A+HG+++QR R + L  F   +  ++VA
Sbjct: 240 KHRPESTVVFCNTKREAQEVSDDLVDYGFSSIALHGDLEQRERDQALVRFANKSTSVLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N+ +    E ++HRIGRTGRAG  G A +L++ ++   +  +E
Sbjct: 300 TDVAARGLDIDSLDAVINYHLARDTEVHVHRIGRTGRAGSKGVACSLISDKEHYKVAMLE 359

Query: 362 KLIEKKV 368
             +++ +
Sbjct: 360 DYLDRAI 366


>gi|308496397|ref|XP_003110386.1| hypothetical protein CRE_05666 [Caenorhabditis remanei]
 gi|308243727|gb|EFO87679.1| hypothetical protein CRE_05666 [Caenorhabditis remanei]
          Length = 562

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 131/343 (38%), Positives = 191/343 (55%), Gaps = 5/343 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML--TILEKGR 67
           P  V  +L   + KPT IQ  + P+ +   D+  IA+TG+GKT +F+LP L  T  +  R
Sbjct: 141 PGQVHELLYGKFQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHTTKQPHR 200

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
            R   P  L+L PTRELA QV +    +  +  L +  L GG     Q + LERG DV++
Sbjct: 201 QRGEGPSVLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLERGVDVVV 260

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+LD  + G   M     LV+DEADRMLDMGF P I+ I   +   RQTL+FSAT 
Sbjct: 261 ATPGRLLDFLDNGTTNMKRCSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMFSATW 320

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ--SQDTM 245
             E++ ++ +F ++   + V +    A       V    ++ K+  L+  L Q  +Q   
Sbjct: 321 PKEVRSMASDFQKDAAFLNVGSLELAANHNITQVVDILEEHGKQAKLMDLLNQIMNQKEC 380

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
           K  IIF   K+    L  ++ + G+    IHG+ +Q  R  +L  FK G   +++A+D+A
Sbjct: 381 KT-IIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPILLATDVA 439

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           ARGLD+ D+  V N+D PN +E+Y+HRIGRTGR  + G A+T 
Sbjct: 440 ARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRRDKKGTAYTF 482


>gi|254585603|ref|XP_002498369.1| ZYRO0G08580p [Zygosaccharomyces rouxii]
 gi|238941263|emb|CAR29436.1| ZYRO0G08580p [Zygosaccharomyces rouxii]
          Length = 539

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 133/363 (36%), Positives = 210/363 (57%), Gaps = 10/363 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ L L P++   +  + + KPTPIQ  + P +L   DV G+A+TG+GKT +F +P +
Sbjct: 128 LSFSHLSLKPEIQSEI--SKFPKPTPIQSVSWPYLLSGRDVIGVAETGSGKTFAFGVPAI 185

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++  G A+ +  + L++ PTRELA+Q  DN         L    + GG+P + Q  +L
Sbjct: 186 DQLVSNGDAKRKSVKVLVISPTRELASQTYDNLIILTNKVGLECCCVYGGVPKQEQRNQL 245

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV-PFTR 178
            R + V++ TPGR+LD  N   + ++ ++ LV+DEADRML+ GF   I+NI +      R
Sbjct: 246 -RNSQVVVATPGRLLDLINEQSVDLSQVQYLVLDEADRMLEKGFEEDIKNIINQTNSRDR 304

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL+F+AT   E+++++  F+++P ++ + N    +A       V       K   LL+ 
Sbjct: 305 QTLMFTATWPKEVRELASTFMRDPVKVSIGNRDELSANKRITQIVEVIEPRQKDRKLLEL 364

Query: 238 LLQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L + Q   K     +IF   KK    + ++L+  G+ V AIHG++ Q+ R   L++FK G
Sbjct: 365 LRKYQSGAKKDDKVLIFALYKKEASRVENNLKYNGYDVAAIHGDLSQQQRTSALNDFKAG 424

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              L++A+D+AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG+ G A TL    + 
Sbjct: 425 KSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTDNE- 483

Query: 355 KHI 357
           KH+
Sbjct: 484 KHL 486


>gi|325271305|ref|ZP_08137840.1| ATP-dependent RNA helicase DbpA [Pseudomonas sp. TJI-51]
 gi|324103564|gb|EGC00876.1| ATP-dependent RNA helicase DbpA [Pseudomonas sp. TJI-51]
          Length = 461

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 136/370 (36%), Positives = 219/370 (59%), Gaps = 10/370 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA L LS  ++ A LDA GY   TPIQ +++P++L+  D+   A+TG+GKTA+F + +L 
Sbjct: 8   FATLPLSTAML-ANLDALGYAAMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            +     R    + L+L PTRELA QVA    +  +   N+ +  L GG+    Q   LE
Sbjct: 67  PINP---RYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLE 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRI  H ++G L+++ +  LV+DEADRMLDMGF   I +I    P  RQT
Sbjct: 124 HGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++++ +F++NP++++V +   T   IE  F+    +  ++   + ++L 
Sbjct: 184 LLFSATYPAGIKQLAADFMRNPQQVKVES-LHTDNQIEQRFIEIDPE--QRLEAVTRVL- 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ + FC  K+   ++   L  +G    A+HG+++QR R ++L+ F   +  ++V
Sbjct: 240 GHYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N ++   AE ++HR+GRTGRAG  G A +LVA  +     AI
Sbjct: 300 ATDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGLAVSLVAPAEGHRAQAI 359

Query: 361 EKLIEKKVDW 370
           E+L +  + W
Sbjct: 360 EQLQKSPLRW 369


>gi|182624967|ref|ZP_02952745.1| ATP-dependent RNA helicase DbpA [Clostridium perfringens D str.
           JGS1721]
 gi|177909764|gb|EDT72182.1| ATP-dependent RNA helicase DbpA [Clostridium perfringens D str.
           JGS1721]
          Length = 453

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 122/364 (33%), Positives = 210/364 (57%), Gaps = 31/364 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ A+ + GY  P+ +Q  +IP +L+  D+   +QTG+GKTASF +P  
Sbjct: 1   MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + EK     +  + L+L PTRELA QV D     G+   +  A + G  PF  Q ++L+
Sbjct: 59  -VCEKINIEEKKVQCLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIRELK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+ DH  RG L ++ +  +VIDEAD+ML MGFI  I++I   +   + T
Sbjct: 118 QRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT + E++++ E +++NP  +EV +                             + 
Sbjct: 178 ALFSATFSKEIEEICEEYMRNPMLLEVKSK----------------------------VF 209

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++D ++   I   +K  V ++   L+ +G +   +HG+++Q+ R++++ NF++   +++V
Sbjct: 210 NRDRIEESAIEIEEKNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 269

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ +  +  V N++VP   E+Y+HRIGRTGRAGR GKA T V   + K+++ +
Sbjct: 270 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 329

Query: 361 EKLI 364
           E+ I
Sbjct: 330 EEYI 333


>gi|289619768|emb|CBI54051.1| unnamed protein product [Sordaria macrospora]
          Length = 507

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 131/353 (37%), Positives = 206/353 (58%), Gaps = 27/353 (7%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEKGRARVRMPRTLIL 78
           GY  PTPIQ ++IPL LQ  D+ GIA+TG+GKTA+F LP+L  +L+K +        L+L
Sbjct: 116 GYKNPTPIQAESIPLALQNRDIIGIAETGSGKTAAFALPILQALLDKPQPLF----ALVL 171

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELAAQ+A  FE  G   +L  AL++GG+    Q   L +   V++ TPGR+LDH  
Sbjct: 172 APTRELAAQIAQAFEALGSLISLRCALILGGMDMVTQAIALGKKPHVIVATPGRLLDHLE 231

Query: 139 RGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
           + K   + +++ LV+DEADR+LDM F P ++ I   +P  R+T LFSATM+ +++ +   
Sbjct: 232 KTKGFSLRSMQYLVMDEADRLLDMDFGPILEKILKFLPRERRTFLFSATMSSKVESLQRA 291

Query: 198 FLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
            L++P ++ V+T   +T  T++  +V  +  +  K   L             +  CN   
Sbjct: 292 SLRDPLKVSVSTNKYATVSTLKSNYV--FIPHMHKDTYL-------------VYLCNDAL 336

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
              +   + E    +V +        SR+  L+ F+ G+ +++VA+D+AARGLDIP+V  
Sbjct: 337 PSCSAPSAWEPSPSTVVS-----RSPSRLGALNKFRAGSREILVATDVAARGLDIPNVDC 391

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           V N D+P  ++ Y+HR+GRT RAG+ G A ++V + D++    IE  +  K+D
Sbjct: 392 VINHDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYDLEIWLRIEAALGHKLD 444


>gi|198423899|ref|XP_002126471.1| PREDICTED: similar to Eukaryotic initiation factor 4A-III
           (Eukaryotic translation initiation factor 4A isoform 3)
           (ATP-dependent RNA helicase eIF4A-3) (ATP-dependent RNA
           helicase DDX48) (DEAD box protein 48) (Eukaryotic
           initiation factor 4A-like NUK-34) (Nucl... [Ciona
           intestinalis]
          Length = 409

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 208/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  + +  DV   AQ+GTGKTA+F + +L +
Sbjct: 38  FDSMGLREDLLRGIYAYGFEKPSAIQQRAIKQITKGRDVIAQAQSGTGKTATFSISVLQM 97

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    ++R  + L+L PTRELA Q+       G   ++     IGG       +KL+ G
Sbjct: 98  ID---TQLRDTQALVLSPTRELAQQIQKVILALGDYMSVQCHACIGGTNVGEDIRKLDYG 154

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++L++DE+D ML+ GF   I ++   +P   Q +L
Sbjct: 155 QHVVSGTPGRVFDMIRRRSLRTRSIKMLILDESDEMLNKGFKEQIYDVYRYLPPAIQVVL 214

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT---YAQYSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA      ++   C L   L 
Sbjct: 215 LSATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVDKEEWKFDTLCDLYDTL- 273

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   +    F+V  +HG++ Q+ R +I+  F+ G  +++
Sbjct: 274 ----TITQAVIFCNTKRKVDWLTEKMRDANFTVLCMHGDMPQKERTEIMKQFRSGESRVL 329

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G +   V  +DI+ +  
Sbjct: 330 ICTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVSINFVKNDDIRILRD 389

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  ++S L
Sbjct: 390 IEQYYSTQIDEMPMNVSDL 408


>gi|258577621|ref|XP_002542992.1| hypothetical protein UREG_02508 [Uncinocarpus reesii 1704]
 gi|237903258|gb|EEP77659.1| hypothetical protein UREG_02508 [Uncinocarpus reesii 1704]
          Length = 783

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 137/432 (31%), Positives = 221/432 (51%), Gaps = 42/432 (9%)

Query: 10  PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL----- 63
           P  +  ++D  GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L  +     
Sbjct: 351 PARLLEIIDKVGYKDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIAELPR 410

Query: 64  --EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             E    +   P  +IL PTRELA Q+ +   K+       V  ++GG   E Q+  L  
Sbjct: 411 LDEFEWRKSDGPYAIILAPTRELAQQIENEARKFCSPLGFNVVSIVGGHSLEEQSFSLRN 470

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT---- 177
           GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +P T    
Sbjct: 471 GAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKP 530

Query: 178 ---------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
                                RQT++++ATM   +++++  +L+ P  I +       +T
Sbjct: 531 DTDEAEDPRAMSQHVGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIITIGNVGEAVDT 590

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
           +E   V   A   K+   L  +L S +     I+F N K+N   +   +++ GFS   +H
Sbjct: 591 VEQ-RVEFIAGEDKRKKRLADILASGEYRPPIIVFVNIKRNCDAVARDIKQMGFSAVTLH 649

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y HRIGRT
Sbjct: 650 GSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRT 709

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH--NHAR 394
           GRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ   N A 
Sbjct: 710 GRAGKSGVAITFLGNEDSDVMYDLKQML------MKSSISRVPEELRKHEAAQSKPNKAG 763

Query: 395 KNNPIPQKSTGF 406
                  +S GF
Sbjct: 764 GGQKKADESGGF 775


>gi|115474897|ref|NP_001061045.1| Os08g0159900 [Oryza sativa Japonica Group]
 gi|75328149|sp|Q84UQ1|RH42_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 42
 gi|29467560|dbj|BAC66730.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|37806159|dbj|BAC99664.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|113623014|dbj|BAF22959.1| Os08g0159900 [Oryza sativa Japonica Group]
 gi|218200507|gb|EEC82934.1| hypothetical protein OsI_27901 [Oryza sativa Indica Group]
 gi|222639953|gb|EEE68085.1| hypothetical protein OsJ_26125 [Oryza sativa Japonica Group]
          Length = 1049

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 134/377 (35%), Positives = 212/377 (56%), Gaps = 7/377 (1%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           GL+ K++  +   G+ KP  IQ + +P+++   D  GIA+TG+GKT +FVLPML  ++  
Sbjct: 430 GLTSKLLDTIKKLGFEKPMSIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQ 489

Query: 67  RARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
            A V    P  LI+ PTREL  Q+  + +K+ K   +    + GG     Q  +L+RGA+
Sbjct: 490 PAVVPGDGPIGLIMAPTRELVVQIHSDIKKFSKALGINCVAIYGGSGVAQQISELKRGAE 549

Query: 125 VLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           +++CTPGR++D    + GK+  +  +  LV+DEADRM DMGF P I  I       RQT+
Sbjct: 550 IVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNTRPDRQTV 609

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   +++ ++   L  P  I+V   S   + I    V    +  +   LL+ L + 
Sbjct: 610 LFSATFPRQVEILARKVLTKPVEIQVGGRSVVNKDITQ-LVEVRPENERFFRLLELLGEW 668

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D  K  ++F + +    +L   L + G+   ++HG  DQ  R   L++FK     L++A
Sbjct: 669 FDKGKI-LVFVHSQDKCDSLLKDLFQHGYPCLSLHGGKDQTDRESTLADFKSNVCSLLIA 727

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           + +AARGLD+ ++  V N+DVPN  E+Y+HR+GRTGRAGR G A T +++E+ ++   + 
Sbjct: 728 TSVAARGLDVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKGFAVTFISEEEERYAPDLV 787

Query: 362 KLIEKKVDWLNGDLSSL 378
           K +E     +  DL  L
Sbjct: 788 KALELSEQAVPEDLKGL 804


>gi|313231677|emb|CBY08790.1| unnamed protein product [Oikopleura dioica]
          Length = 863

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 123/366 (33%), Positives = 205/366 (56%), Gaps = 5/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G   +++  +   G++ PTPIQ   IP +L   DV GIAQTG+GKTA FV P++  
Sbjct: 231 FGHMGFPDRLLERIRKVGFLDPTPIQSTAIPQILAGRDVIGIAQTGSGKTAGFVWPIIYH 290

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
           + K R       P  LI+ PTREL  Q+     K+ KNY+   V +  GG+    Q K+L
Sbjct: 291 VTKQRPLKYGDGPMALIMAPTRELCQQLYAEVRKFAKNYDSFRVGICFGGVNMYEQGKEL 350

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++L+ TPGR++DH  +G   ++   I+ +DEADRML++GF P +++I + V   +Q
Sbjct: 351 KMGVEILVATPGRLIDHVKKGNTELSKCTIICLDEADRMLELGFEPQVRSICNHVRPDKQ 410

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSAT    +++++   L +P ++         E +   F     Q  K   LL  ++
Sbjct: 411 CLFFSATFKKVIERLATEVLNDPVKLTQGQIGQVNENVTQTF-KILGQDQKLQWLLNNIV 469

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q  +++ + ++F  +K + V +   L+K G+    IHG++ Q  R  ++  FK+  +  +
Sbjct: 470 Q-LNSVGSLLVFVTRKADCVTVHEELKKSGYKTGVIHGDMHQAERNDVIKAFKKQQLATL 528

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  +  V N+D     + ++HR+GRT RAG  G A +L+  +D ++   
Sbjct: 529 IATDVAARGLDISHIKTVINYDPARNYDTHVHRVGRTARAGNTGTAISLLTPQDSEYAGI 588

Query: 360 IEKLIE 365
           + + IE
Sbjct: 589 VLRSIE 594


>gi|194863559|ref|XP_001970500.1| GG23340 [Drosophila erecta]
 gi|190662367|gb|EDV59559.1| GG23340 [Drosophila erecta]
          Length = 782

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 140/395 (35%), Positives = 217/395 (54%), Gaps = 12/395 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP L  
Sbjct: 159 FYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLER 218

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +      + R L+L PTREL AQV    ++  +  ++ V L IGG+  +AQ   L +
Sbjct: 219 LLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQ 278

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++DH  N     ++++E+L++DEADRMLD  F   ++ I +    TRQT
Sbjct: 279 NPDIVIATPGRLIDHIKNTPSFTLDSVEVLILDEADRMLDEYFAEQMKEIINSCCKTRQT 338

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM+++++ ++   L  P ++ VN     A  +   F+            +   L 
Sbjct: 339 MLFSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLI 398

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F   KK    L   L   G     +HGN+ Q+ R++ L  FKE  I +++
Sbjct: 399 CRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLI 458

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  I
Sbjct: 459 ATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDI 518

Query: 361 EKLIEKK----------VDWLNGDLSSLNPPLEKI 385
            K  E            ++     L+SL P ++ I
Sbjct: 519 IKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNI 553


>gi|145353098|ref|XP_001420866.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581101|gb|ABO99159.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 404

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G+   ++  +   G+ KP+ IQ + +  ++   DV   AQ+GTGKT+   L +  +
Sbjct: 33  FDAMGIREDLLRGLYSYGFEKPSAIQQRAVVPIISGRDVIAQAQSGTGKTSMISLALCQM 92

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     V+    L+L PTRELA Q        G   N+ V   IGG       +KL+ G
Sbjct: 93  LDTTSREVQ---GLVLSPTRELAVQTEKTALSLGNFMNVQVHACIGGRSIGDDIRKLDYG 149

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L    I+ILV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 150 CHIVSGTPGRVFDMIKRRNLRTRGIKILVLDEADEMLNKGFKEQIYDVYRYLPPETQVVL 209

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+ +E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 210 VSATLPNEVLEMTSKFMTDPMRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 268

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN KK V  L   + +  F+V A+HG++ Q+ R +I++ F+ GT +++
Sbjct: 269 ----TITQAVIFCNTKKKVDWLTEKMRQNNFTVSAMHGDMPQKEREEIMNEFRGGTTRVL 324

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  
Sbjct: 325 ITTDVWARGIDVQQVSLVINYDLPGNRENYIHRIGRSGRYGRKGVAINFVKADDVRALRD 384

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 385 IEQYYSTQIDEMPMNVADL 403


>gi|15230945|ref|NP_188610.1| eukaryotic translation initiation factor 4A, putative / eIF-4A,
           putative / DEAD box RNA helicase, putative [Arabidopsis
           thaliana]
 gi|109893655|sp|Q94A52|RH2_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 2
 gi|332642762|gb|AEE76283.1| DEAD-box ATP-dependent RNA helicase 2 [Arabidopsis thaliana]
          Length = 408

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 203/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+G+   V+  V + G+ KP+ IQ + +  +LQ  DV   AQ+GTGKT+   L +  +
Sbjct: 37  FNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQV 96

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     V+    LIL PTRELA Q     +  G + N+     IGG       +KLE G
Sbjct: 97  VDTSSREVQ---ALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHG 153

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++L++DE+D ML  GF   I ++   +P   Q  L
Sbjct: 154 VHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCL 213

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+  P +I V     T E I+  FVA   +   +   C L   L 
Sbjct: 214 VSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL- 272

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   +    F+V ++HG++ Q+ R  I++ F+ G  +++
Sbjct: 273 ----TITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVL 328

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +  
Sbjct: 329 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRD 388

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 389 IEQYYSTQIDEMPMNVADL 407


>gi|255719590|ref|XP_002556075.1| KLTH0H04466p [Lachancea thermotolerans]
 gi|238942041|emb|CAR30213.1| KLTH0H04466p [Lachancea thermotolerans]
          Length = 553

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 131/362 (36%), Positives = 211/362 (58%), Gaps = 9/362 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  + LS ++   +  + + KPTPIQ  + P +L   DV G+A+TG+GKT +F +P +
Sbjct: 143 LSFDQISLSSEIQEEI--SKFPKPTPIQAVSWPYLLSGKDVVGVAETGSGKTFAFGVPAI 200

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+   A+ +  + L++ PTRELA+Q+ DN     K   +    + GG+P + Q  +L+
Sbjct: 201 HNLKTADAKSQGVQVLVISPTRELASQIYDNLILLTKKAGVNCCCVYGGVPKDEQRSQLK 260

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQ 179
           + + V++ TPGR+LD    G   ++N++ LV+DEADRML+ GF   I+ I      T RQ
Sbjct: 261 K-SQVVVATPGRLLDLIEEGSARLSNVKYLVLDEADRMLEKGFEEDIKRIIGSTKATGRQ 319

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           TL+F+AT   E+++++  F+ +P +I + N    +A       V     + K   LL+ L
Sbjct: 320 TLMFTATWPKEVRELANTFMDSPVKISIGNRDELSANKRITQIVEVIDPFKKDRKLLELL 379

Query: 239 LQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            + Q   +     +IF   KK    +  +L+  G++V AIHG++ Q+ R + L+ FK G 
Sbjct: 380 KKYQSGARKNDKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGE 439

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +++A+D+AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG  G A TL  +++ K
Sbjct: 440 SNMLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGLTGTAHTLFTEQE-K 498

Query: 356 HI 357
           H+
Sbjct: 499 HL 500


>gi|333004456|gb|EGK23986.1| ATP-independent RNA helicase dbpA [Shigella flexneri VA-6]
          Length = 455

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 133/364 (36%), Positives = 210/364 (57%), Gaps = 10/364 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   
Sbjct: 10  LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126
           A +     L+L PTRELA QVA    +  +   N  +  L GG PF  Q   L+    ++
Sbjct: 67  ASLFQTLALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +  +S    ++P  IE+++ +     IE  F  T ++   K  LLQ+LL S     
Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN KK+   +C +L +   S  ++HG+++QR   + L  F  G+ +++VA+D+AA
Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVEQSALSLHGDLEQRD--QTLVRFANGSARVLVATDVAA 300

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I  +++ 
Sbjct: 301 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 360

Query: 367 KVDW 370
           K++W
Sbjct: 361 KLNW 364


>gi|328697410|ref|XP_001948642.2| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Acyrthosiphon pisum]
          Length = 718

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 142/422 (33%), Positives = 218/422 (51%), Gaps = 29/422 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +      VV  +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP    
Sbjct: 109 FIEGNFPESVVQELKKQGFSEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYMLPAAVH 168

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA Q+    + +  +   T   + GG P   Q   L+
Sbjct: 169 ISNQEPLQRGDGPIALVLAPTRELAQQIQSVAKMFSSSIRNTC--IFGGTPKGPQAHDLQ 226

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G +++I TPGR++D   RG   +  +  LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 227 NGVEIVIATPGRLIDFLERGSTNLKRVTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 286

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+Q ++ +FL +  +I V +    A       +     + K   L   L++
Sbjct: 287 LMWSATWPKEVQALAADFLVDYIQINVGSLELAANHNIQQLIEVCEDHEKDYKLFDLLMK 346

Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S +     IIF  +KK V  L   ++ +G+   ++HG+  Q+ R  +L+ F+ G   ++
Sbjct: 347 ISNEPGFKAIIFVEKKKKVDELTRQIKNEGYIATSMHGDKSQQDRDHVLNEFRNGKSPIL 406

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK---- 355
           VA+D+AARGLD+ DV +V NFD PN +E+Y+HRIGRTGR+ + G A+T  +  +++    
Sbjct: 407 VATDVAARGLDVDDVKYVINFDYPNSSEDYVHRIGRTGRSKQAGIAYTFFSTNNMRQAKD 466

Query: 356 --------HIDAIEKLIE----------KKVDWLNGDLSSLNPPLE-KIDIAQHNHARKN 396
                   H    E+LIE           +  W N     +N PL  +    Q N+AR  
Sbjct: 467 LISILEEAHQVVPEELIEMANMAKNHMSSRAKWTN-RYRDVNTPLATQSPYGQSNNARTA 525

Query: 397 NP 398
           NP
Sbjct: 526 NP 527


>gi|238008396|gb|ACR35233.1| unknown [Zea mays]
          Length = 618

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 144/405 (35%), Positives = 223/405 (55%), Gaps = 30/405 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF DL L   ++  + + G V+PTPIQ++ +P+VL   D+ GIA TG+GKT  FVLP++ 
Sbjct: 174 DFRDLRLPEPMLRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIM 233

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
           +  +  + + +     P  +I+ P+RELA Q  D  E++           +   L IGG+
Sbjct: 234 VALQEESLMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLIPLKEAGYPEIRHLLCIGGV 293

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q   L++G  +++ TPGR+ D   + K+ ++N   L +DEADR++D+GF   I+ +
Sbjct: 294 DMRTQLDVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIKEV 353

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q  ++N L  P  + VN   + A  ++   V    +Y K
Sbjct: 354 FDHFKDQRQTLLFSATMPQKIQNFAKNALVKP--VTVNVGRAGAANLD---VIQEVEYVK 408

Query: 231 KCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A +  LL+  Q T    +IFC  K +V  +   L  +G    AIHG  DQ  R   + 
Sbjct: 409 EDARIIYLLECLQKTPPPVLIFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERQNAID 468

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T +
Sbjct: 469 SFKTGRKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 528

Query: 350 AKE-------DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
            K        D+KH      L+++    +   L+ LN PL+  +I
Sbjct: 529 NKNQTETTLLDLKH------LLKEAKQRIPPVLAELNDPLDDEEI 567


>gi|74149390|dbj|BAE22450.1| unnamed protein product [Mus musculus]
          Length = 615

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 132/374 (35%), Positives = 204/374 (54%), Gaps = 14/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 154 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 209

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DE DRMLDMGF P I+ I   +
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEGDRMLDMGFEPQIRKIVDQI 269

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 270 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 329

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 330 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 388

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 389 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448

Query: 353 DIKHI-DAIEKLIE 365
           +IK + D I  L E
Sbjct: 449 NIKQVSDLISVLRE 462


>gi|84996425|ref|XP_952934.1| DEAD-family helicase [Theileria annulata strain Ankara]
 gi|65303931|emb|CAI76310.1| DEAD-family helicase, putative [Theileria annulata]
          Length = 757

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 132/381 (34%), Positives = 207/381 (54%), Gaps = 33/381 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A+  L  +++ A+  AGY+KPTPIQ++ IP+ L+  D+ GIA TG+GKTA+FVLPMLT 
Sbjct: 341 WAESPLPWELLEAIKKAGYIKPTPIQMQAIPIALEMRDLIGIAVTGSGKTAAFVLPMLTY 400

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           ++K         +  P  LIL P+RELA Q+ D   K+    +     ++GG   E+Q  
Sbjct: 401 VKKLPPLDDETSLDGPYALILAPSRELALQIYDETVKFSAFCSCRSVAVVGGRNAESQAF 460

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L +G +++I TPGR+ D  +R   +++    +++DEADRM+DMGF   ++ I   +P T
Sbjct: 461 ELRKGCEIIIGTPGRVKDCLDRAYTVLSQCNYVILDEADRMIDMGFEDVLKYILDCIPST 520

Query: 178 ------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
                                   R T +FSATM   ++K+++ +L+ P  I +      
Sbjct: 521 NLKDRDESSALEQELSTKAGHRRYRITHMFSATMPPAVEKLTKRYLRAPAFISIGDVGGG 580

Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
             +I       + Q SKK   L++ L++ +     IIF N KKN   +   + K G+   
Sbjct: 581 KTSITQQL--DFVQESKKTRHLEETLETLEP--PIIIFVNLKKNTDVITKHITKIGYRAV 636

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
           ++HG   Q SR   L+ FK G   ++VA+D+  RGLD+  +  V N+D+P   + Y HRI
Sbjct: 637 SLHGGKTQESREDALNKFKSGAYDILVATDVVGRGLDVEGIKVVINYDMPKDIQTYTHRI 696

Query: 334 GRTGRAGRHGKAFTLVAKEDI 354
           GRTGRAG  G + + V   D+
Sbjct: 697 GRTGRAGLKGLSISFVTDADV 717


>gi|156554399|ref|XP_001604593.1| PREDICTED: similar to DEAD box polypeptide 5 [Nasonia vitripennis]
          Length = 551

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 129/383 (33%), Positives = 207/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +      V+  +   GY +PTPIQ +  P+ +   ++ GIAQTG+GKT +++LP +  
Sbjct: 127 FEEGNFPDYVMQGIKKQGYSEPTPIQAQGWPIAMSGKNMVGIAQTGSGKTLAYILPAIVH 186

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   +   R   P  LIL PTRELA Q+      +G    +    + GG P   Q + LE
Sbjct: 187 INSQQPLNRGDGPIALILAPTRELAQQIQTVASDFGSLSYVRNTCIFGGAPKGGQARDLE 246

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 247 RGVEIVIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 306

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALL 235
           L++SAT   E++ ++E +L +  ++ + +    A     + I+ C      + +K   LL
Sbjct: 307 LMWSATWPKEVRMLAEEYLVDYTQLNIGSLQLAANHNILQIIDVC--QEQEKETKLGTLL 364

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q++    D     IIF   KK V N+  ++ + G+    +HG+  Q+ R  +L  F+   
Sbjct: 365 QEIGNVNDDGGKTIIFVETKKKVENITRNIRRYGWPAVCMHGDKSQQERDYVLREFRNKK 424

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+D+AARGLD+ DV +V NFD P+ +E+YIHRIGRTGR+   G ++     ++ +
Sbjct: 425 GSILVATDVAARGLDVDDVRYVINFDYPSSSEDYIHRIGRTGRSQSSGTSYAFFTPQNGR 484

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
               +  ++ +    +N  LS L
Sbjct: 485 QAKDLINVLREANQIINPKLSEL 507


>gi|77461469|ref|YP_350976.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens Pf0-1]
 gi|77385472|gb|ABA76985.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens Pf0-1]
          Length = 478

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 138/395 (34%), Positives = 221/395 (55%), Gaps = 18/395 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 25  FNTLPLSAAMLANLDSLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  +   N+ V  L GG+ F  Q   LE 
Sbjct: 85  INP---RYFGCQALVICPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSFGPQIGSLEH 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I++I    P  RQTL
Sbjct: 142 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIIEQTPARRQTL 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           LFSAT    +++++  F+++P+ ++        + IE  F  ++   + S    +L    
Sbjct: 202 LFSATYPVGIKQLASKFMRDPQTVKAEAFHDDTQ-IEQRFYEISPEERMSAVTKVLHHFR 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +     + + FC  K+ V      L  +G S   +HG+++QR R ++L+ F   +  ++
Sbjct: 261 PA-----STVAFCFTKQQVQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  +     A
Sbjct: 316 VATDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSEAHRAQA 375

Query: 360 IEKLIEKKVDWLNGD-LSS-----LNPPLEKIDIA 388
           IE+L +  ++W   D L S     L PP+  + IA
Sbjct: 376 IEQLQKTPLNWDQVDNLKSQGGAPLQPPMSTLCIA 410


>gi|21356161|ref|NP_651970.1| Rs1 [Drosophila melanogaster]
 gi|7304081|gb|AAF59119.1| Rs1 [Drosophila melanogaster]
 gi|28626484|gb|AAO49161.1| LD15481p [Drosophila melanogaster]
          Length = 782

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 141/395 (35%), Positives = 216/395 (54%), Gaps = 12/395 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP L  
Sbjct: 159 FYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLER 218

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +      + R L+L PTREL AQV    ++  +   + V L IGG+  +AQ   L +
Sbjct: 219 LLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQ 278

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I +    TRQT
Sbjct: 279 NPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQT 338

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM+++++ ++   L  P ++ VN     A  +   F+            +   L 
Sbjct: 339 MLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLI 398

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F   KK    L   L   G     +HGN+ Q+ R++ L  FKE  I +++
Sbjct: 399 CRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLI 458

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  I
Sbjct: 459 ATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDI 518

Query: 361 EKLIEKK----------VDWLNGDLSSLNPPLEKI 385
            K  E            ++     L+SL P ++ I
Sbjct: 519 IKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNI 553


>gi|326502382|dbj|BAJ95254.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 412

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G+   ++  + D G+ KP+ IQ + +  ++   DV   AQ+GTGKT+   L +  +
Sbjct: 41  FDAMGIREDLLRGIYDYGFEKPSAIQQRAVIPIITGRDVIAQAQSGTGKTSMISLSVCQV 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E     V   + LIL PTRELA Q     +  G   +++V   +GG       +KLE G
Sbjct: 101 IE---TNVHEVQALILSPTRELATQTERVMQAVGSFMSVSVHACVGGKSIGEDIRKLESG 157

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML  GF   I ++   +P   Q +L
Sbjct: 158 VHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDEADEMLSRGFKDQIYDVYRYLPPELQVVL 217

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 218 ISATLPHDILEITSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL- 276

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   +    F+V A+HG++ Q+ R  I++ F+ GT +++
Sbjct: 277 ----TITQAVIFCNTKRKVDWLTERMRTNNFTVSAMHGDMPQKERDAIMNEFRGGTTRVL 332

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V K+DI+ +  
Sbjct: 333 ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRKDDIRILRD 392

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 393 IEQYYSTQIDEMPMNVADL 411


>gi|304434516|dbj|BAJ15435.1| VASA-like gene [Mytilus galloprovincialis]
          Length = 745

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 130/357 (36%), Positives = 204/357 (57%), Gaps = 13/357 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D GL    +  V  + Y +PTP+Q  +IP+V+   D+   AQTG+GKTA+F+LP+LT
Sbjct: 299 NFDDAGLYDTFLKNVKKSNYDRPTPVQKYSIPIVMSGRDLMACAQTGSGKTAAFLLPVLT 358

Query: 62  ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                 +     + V+ P+ L++ PTRELA Q+  + +++     L   +L GG     Q
Sbjct: 359 GMMNNGLTGSSFSVVQEPQALVVAPTRELAVQIFTDAKRFTHGTMLRPVVLYGGTSLGHQ 418

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + +E+GA +++ TPGR++D   +GK+ +  ++ L++DEADRMLDMGF P I+ I   + 
Sbjct: 419 LRNVEQGAHIVVGTPGRLIDVIGKGKVSLEKLKYLILDEADRMLDMGFGPEIKKIVHELG 478

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTL+FSAT  +E+Q+++  FL +   + V         +   +V    +  K+
Sbjct: 479 APPKEQRQTLMFSATFPEEIQRLAAEFLNDYLFLTVGRVGGACTDVAQ-YVHEVPRDQKR 537

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L   L  S+      ++F  QK+N   L   L + GF   +IHG+  Q+ R + L +F
Sbjct: 538 QKLCDIL--SESGTDKTLVFVEQKRNADFLATYLSQSGFPTTSIHGDRLQQEREEALRDF 595

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           K G   ++VA+ +AARGLDIP V HV N+D+P   + Y+HRIGRTGR G  GK+ + 
Sbjct: 596 KTGRAPILVATSVAARGLDIPLVKHVINYDLPQSIDEYVHRIGRTGRCGNVGKSTSF 652


>gi|226502378|ref|NP_001147853.1| ATP-dependent RNA helicase DDX41 [Zea mays]
 gi|195614138|gb|ACG28899.1| ATP-dependent RNA helicase DDX41 [Zea mays]
          Length = 616

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 144/405 (35%), Positives = 223/405 (55%), Gaps = 30/405 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF DL L   ++  + + G V+PTPIQ++ +P+VL   D+ GIA TG+GKT  FVLP++ 
Sbjct: 172 DFRDLRLPEPMLRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIM 231

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
           +  +  + + +     P  +I+ P+RELA Q  D  E++           +   L IGG+
Sbjct: 232 VALQEESLMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLIPLKEAGYPEIRHLLCIGGV 291

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q   L++G  +++ TPGR+ D   + K+ ++N   L +DEADR++D+GF   I+ +
Sbjct: 292 DMRTQLDVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIKEV 351

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q  ++N L  P  + VN   + A  ++   V    +Y K
Sbjct: 352 FDHFKDQRQTLLFSATMPQKIQNFAKNALVKP--VTVNVGRAGAANLD---VIQEVEYVK 406

Query: 231 KCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A +  LL+  Q T    +IFC  K +V  +   L  +G    AIHG  DQ  R   + 
Sbjct: 407 EDARIIYLLECLQKTPPPVLIFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERQNAID 466

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T +
Sbjct: 467 SFKTGRKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 526

Query: 350 AKE-------DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
            K        D+KH      L+++    +   L+ LN PL+  +I
Sbjct: 527 NKNQTETTLLDLKH------LLKEAKQRIPPVLAELNDPLDDEEI 565


>gi|322706999|gb|EFY98578.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Metarhizium
           anisopliae ARSEF 23]
          Length = 714

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 125/396 (31%), Positives = 210/396 (53%), Gaps = 35/396 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + GL  +++  V   GY +PTPIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L  
Sbjct: 274 WEESGLPQRLLDIVDRVGYKEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVY 333

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +        +     P  LIL PTREL  Q+    +K+ +        ++GG   E Q  
Sbjct: 334 ISDLPPLTEVNKNDGPYALILAPTRELVQQIETEAKKFAEPLGFRCVSIVGGHSLEEQAF 393

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GA++++ TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +P +
Sbjct: 394 ALRNGAEIIVATPGRLVDCIERRLLVLSQCCYIIMDEADRMIDLGFEESVNKILDALPVS 453

Query: 178 -------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS 212
                                    RQT++++ATM   ++++++ +L+ P    +     
Sbjct: 454 NEKPDTDDAENAQLMKSYLGSRDKYRQTMMYTATMPPLVERIAKKYLRRPATATIGNAGE 513

Query: 213 TAETIEHC--FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
             +T+E    F++   +  K+   LQ++L   D     I+F N K+N   +   ++  G+
Sbjct: 514 AVDTVEQRVEFISGEDRRKKR---LQEILSKNDFAPPIIVFVNIKRNCDAVARDIKSMGW 570

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G  Q++VA+DLA RG+D+PDV  V NF++    E+Y 
Sbjct: 571 STVTLHGSKTQEQREAALASVRSGATQVLVATDLAGRGIDVPDVSLVVNFNMATSIESYT 630

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           HRIGRTGRAG+ G A T +  ED   +  + +++ K
Sbjct: 631 HRIGRTGRAGKSGVAITFLGNEDADVMYDLRQMLSK 666


>gi|258645737|ref|ZP_05733206.1| ATP-dependent RNA helicase DeaD [Dialister invisus DSM 15470]
 gi|260403106|gb|EEW96653.1| ATP-dependent RNA helicase DeaD [Dialister invisus DSM 15470]
          Length = 424

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 140/387 (36%), Positives = 216/387 (55%), Gaps = 14/387 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+   +  A+   G   PT IQ  +IP + +  D+ G ++TGTGKT +++LP++  
Sbjct: 4   FIKLGVIEPLAQALYQQGIRFPTVIQQASIPAIFKGKDIIGRSETGTGKTLAYLLPLVQR 63

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++  KG  +V     LI+ PTRELA Q+ D    +       VA +IGG   E Q +KL+
Sbjct: 64  VDVKKGGTQV-----LIMTPTRELAKQIFDVLRPFAILMEADVADIIGGRTIENQIQKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++I TPGR+LDH  R  L ++ ++ +V+DEAD+ML  GF   I  +    P  RQ 
Sbjct: 119 REPHIIIGTPGRLLDHIRRRSLDLSGVKTVVLDEADQMLAAGFREDIDALVDETPKKRQV 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E +K++  ++++    +V    + A T+E     T   + K   L++ L +
Sbjct: 179 LLFSATMPPEAKKLAHKYMKSAVVADV-AEKAVASTVEQRVYETVKTH-KFSLLVRHLKE 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               M   ++FCN ++    L   L E+    V  IHGN+ Q  R +++  F++   Q++
Sbjct: 237 INPYM--AVVFCNTREGAHELAGRLQEETDLVVDEIHGNMSQGQRNQVIREFEKARTQVL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+  + HVFN+D+P   E YIHRIGRTGRAG  G + T    EDI  +  
Sbjct: 295 VASDIAARGLDVEGITHVFNYDIPRNLEYYIHRIGRTGRAGTQGVSITYATPEDILLLRK 354

Query: 360 IEKLIEKKVDWLN--GDLSSLNPPLEK 384
           +EK I++ +   +  G++  +  P  K
Sbjct: 355 LEKAIKEIITKYDEKGNIRRIKGPSAK 381


>gi|270016295|gb|EFA12741.1| Rm62 [Tribolium castaneum]
          Length = 776

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 121/344 (35%), Positives = 198/344 (57%), Gaps = 9/344 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--EKGRARVRMPRTLI 77
           GY  PT IQ +  P+ +   D+ GIAQTG+GKT +++LP +  +  +   AR   P  L+
Sbjct: 146 GYDTPTAIQAQGWPIAMSGKDLVGIAQTGSGKTLAYILPAIVHINNQPSIARGDGPIALV 205

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           L PTRELA Q+      +G +  +    + GG P   Q + LERG ++ I TPGR++D  
Sbjct: 206 LAPTRELAQQIQQVAHDFGSSSYVRNTCIFGGAPKGPQARDLERGVEICIATPGRLIDFL 265

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
            +G   +     LV+DEADRMLDMGF P I+ I   +   RQTL++SAT   E++K++++
Sbjct: 266 EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVRKLAQD 325

Query: 198 FLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           FL+N  +I + +   +A     + ++ C    + + +K   LLQ++  + +     IIF 
Sbjct: 326 FLRNYVQINIGSLQLSANHNILQIVDVC--QEHEKETKLNNLLQEIGNNGEPGAKIIIFV 383

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             KK V ++  ++ + G+    +HG+  Q+ R  +L  F+ G   +++A+D+AARGLD+ 
Sbjct: 384 ETKKKVESITRTIRRYGWPAVCMHGDKSQQERDFVLREFRNGKSSILIATDVAARGLDVE 443

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            + +V N+D PN +E+YIHRIGRTGR+   G ++      + + 
Sbjct: 444 GIKYVINYDYPNSSEDYIHRIGRTGRSDTTGTSYAFFTPSNFRQ 487


>gi|61563575|gb|AAX46760.1| putative DEAD-box family RNA helicase PL10 [Carassius auratus]
          Length = 582

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 207/369 (56%), Gaps = 25/369 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ +   ++  +  + Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 204 FHDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKTKRDLMACAQTGSGKTAAFLLPVLSQ 263

Query: 63  L-----------------EKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV 103
           +                 E G+   R + P +L+L PTRELA Q+ +   K     ++  
Sbjct: 264 IFTEGPGEALQAMKNSAQENGKYGRRKQYPISLVLAPTRELALQIYEEARKVAYRSHVRP 323

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163
            ++ GG     Q + LERG  +L+ TPGR++D   RGK+ ++    LV+DEADRMLDMGF
Sbjct: 324 CVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGF 383

Query: 164 IPYIQNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
            P I+ I    ++ P   RQT++FSAT   E+Q ++ +FL+    + V    ST+E I  
Sbjct: 384 EPQIRRIVEQDTMPPKGLRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQ 443

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
             V  + + + K + L  LL +       ++F   KK   +L   L ++G+S  +IHG+ 
Sbjct: 444 KVV--WVEENDKRSFLLDLLNATGKESLTLVFVETKKGADSLEDFLYREGYSCTSIHGDR 501

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            QR R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+ +  E Y+HRIGRTGR 
Sbjct: 502 TQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLSSDIEEYVHRIGRTGRV 561

Query: 340 GRHGKAFTL 348
           G  G A + 
Sbjct: 562 GNLGLATSF 570


>gi|3775985|emb|CAA09195.1| RNA helicase [Arabidopsis thaliana]
 gi|9294443|dbj|BAB02563.1| RNA helicase [Arabidopsis thaliana]
          Length = 391

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 203/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+G+   V+  V + G+ KP+ IQ + +  +LQ  DV   AQ+GTGKT+   L +  +
Sbjct: 20  FNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQV 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     V+    LIL PTRELA Q     +  G + N+     IGG       +KLE G
Sbjct: 80  VDTSSREVQ---ALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHG 136

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++L++DE+D ML  GF   I ++   +P   Q  L
Sbjct: 137 VHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCL 196

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+  P +I V     T E I+  FVA   +   +   C L   L 
Sbjct: 197 VSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL- 255

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   +    F+V ++HG++ Q+ R  I++ F+ G  +++
Sbjct: 256 ----TITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVL 311

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +  
Sbjct: 312 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRD 371

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 372 IEQYYSTQIDEMPMNVADL 390


>gi|327304757|ref|XP_003237070.1| ATP-dependent RNA helicase DBP10 [Trichophyton rubrum CBS 118892]
 gi|326460068|gb|EGD85521.1| ATP-dependent RNA helicase DBP10 [Trichophyton rubrum CBS 118892]
          Length = 940

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 136/396 (34%), Positives = 209/396 (52%), Gaps = 43/396 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+P ++ A+   G+  PTPIQ KTIPL+L   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 94  FQAMGLNPNLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 153

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                 +V   R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 154 FRNHSTKV-GARGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMASN 212

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I   V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 213 PDIIIATPGRFLHLKVEMNLDLSSIRYAVFDEADRLFEMGFAAQLTEILHALPTSRQTLL 272

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
           FSAT+   L + +   LQ P  I ++  S  +  ++  F  T     K+ ALL  L    
Sbjct: 273 FSATLPKSLVEFARAGLQEPTLIRLDADSKISPDLQSAFF-TVKSADKEGALLHILHDLI 331

Query: 239 --------------LQSQD-----------------------TMKNGIIFCNQKKNVVNL 261
                          ++Q+                       T  + I+F   K +V  +
Sbjct: 332 KIPTGETEAGKMAKKEAQEGKQGASKKRKRADMKGPSAHGTPTEHSTIVFVATKHHVEYI 391

Query: 262 CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321
            H L   GF+V   +G+++Q +R   + NF+ G   ++V +D+AARG+DIP + +V N+D
Sbjct: 392 AHLLRHSGFAVSYAYGSLNQTARKIQVQNFRAGISNILVVTDVAARGIDIPVLANVINYD 451

Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            P++ + YIHR+GRT RAG+ G +++LV   D  ++
Sbjct: 452 FPSQPKIYIHRVGRTARAGQKGWSYSLVRDSDAPYL 487


>gi|160944592|ref|ZP_02091819.1| hypothetical protein FAEPRAM212_02105 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443776|gb|EDP20780.1| hypothetical protein FAEPRAM212_02105 [Faecalibacterium prausnitzii
           M21/2]
          Length = 435

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 212/370 (57%), Gaps = 19/370 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M +++L  S  +  AV   G+ + T IQ KTIPL+L  HDV   A TGTGKT +F +P  
Sbjct: 41  MLYSELQCSEAIHKAVERMGFAEMTEIQEKTIPLMLAGHDVIAKAPTGTGKTCAFGIP-- 98

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-------VALLIGGIPFE 113
            ++E  +   + P+ +I+ PTRELA Q+A+         NLT       VA + GG   E
Sbjct: 99  -VVEHIQPENKYPQAVIMAPTRELAQQIAEELT------NLTYFMPEVQVACVYGGANME 151

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q K+L  G  +++ TPGR++DH+    + ++++  +V+DEAD ML+MGF   +++I  +
Sbjct: 152 KQAKRLAEGCQIVVATPGRLMDHYKHHSIDISHVTQIVLDEADEMLNMGFYKDVRHIIEM 211

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +   +   +FSAT++ E+  +   +  N + I V     +   I    + T  +   K +
Sbjct: 212 MKARKALSMFSATISREVMDIGWLYQHNAEEITVQPREESQPKITQYMLETSGR--NKLS 269

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L Q++  +   K  ++FC+ K N   L + L + GFSV  +HG++ Q+ R +I+  F++
Sbjct: 270 DLAQIIIGEG-YKRVMVFCDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQAFRD 328

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G + ++VA+D+AARG+D+ DV  V N+DVP+  E+Y HRIGRTGRA + G ++     E+
Sbjct: 329 GKLAILVATDVAARGIDVSDVDAVINYDVPSENEHYTHRIGRTGRAKKEGVSYLFYVPEE 388

Query: 354 IKHIDAIEKL 363
            K +  + +L
Sbjct: 389 KKRVQELLRL 398


>gi|313836106|gb|EFS73820.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2]
 gi|314929641|gb|EFS93472.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1]
 gi|314970583|gb|EFT14681.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3]
          Length = 476

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 194/347 (55%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LG+  ++V A+   G   P  IQI  IP  +   DV G A TG+GKT +F +P+L+ 
Sbjct: 22  FSALGVPDEIVAALAKMGIAAPFRIQIAAIPDAIAGRDVLGRAATGSGKTLAFGVPLLSR 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L       + PR LIL PTRELA Q+AD       +  L+  L+ GG+ +  Q K  ++G
Sbjct: 82  LSAAPREDKRPRALILSPTRELAMQIADVLSPLASSMGLSTILIAGGMSYGPQTKAFKKG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR++D    G   ++ I + V+DEAD M ++GF+  + +I   VP   Q LL
Sbjct: 142 VDLVVATPGRLVDLLETGDADLSGIAVTVLDEADHMAELGFMEAVGSILDAVPEDGQRLL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + K+ + ++ +P   EV++   +  T+ H   A   +  +K  L+ ++    
Sbjct: 202 FSATLDGAVNKLVKRYMHDPVTHEVDSDKGSVSTMTHH--AFQIKPHEKVGLMCEIANRS 259

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
               + I+F   ++    +   L   G    A+HG + Q +R ++L+ FK+G++ ++VA+
Sbjct: 260 ---GHTIVFARTQRGASRMAEQLRGAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVAT 316

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+ DV  V   D P  +++Y+HR GRT RAG  G   +L+
Sbjct: 317 DVAARGIDVDDVTLVLQVDPPMNSKDYLHRSGRTARAGHDGAVVSLI 363


>gi|118360242|ref|XP_001013358.1| Type III restriction enzyme, res subunit family protein
           [Tetrahymena thermophila]
 gi|89295125|gb|EAR93113.1| Type III restriction enzyme, res subunit family protein
           [Tetrahymena thermophila SB210]
          Length = 1130

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 130/367 (35%), Positives = 212/367 (57%), Gaps = 4/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   V  A+   G+  PTPIQ K IPL+L+  DV   ++TG+GKTA+F++P++  
Sbjct: 301 FESMNLVYPVYKAIKTRGFNMPTPIQRKAIPLILEGRDVVACSRTGSGKTAAFIIPLINK 360

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   +R+   R LI+ PTRELA Q+A   + + K  +LT  L++GG   E Q + L   
Sbjct: 361 LQ-NHSRIVGARALIVVPTRELALQIASVLKTFIKFTDLTYTLIVGGHGLEGQFESLASN 419

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR+    +   L +N +E L+ DE D + +MGF   ++ I   V   RQTL+
Sbjct: 420 PDIIIATPGRLSQLIDETDLSLNKVEFLIFDECDYLFEMGFADQMKTILKKVSQQRQTLM 479

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ +EL   +   L+    +++++  +  E I   F+ T  + ++K A L  LL+S 
Sbjct: 480 FSATIPEELSSFARAGLKEYVFVKLDSEFTINENITLNFILT--RNNEKIASLVYLLKSV 537

Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +N I+F + K +V  +C  L+K   S  +I+G +D  +R   +S F+     +MV 
Sbjct: 538 IPSEENSIVFASTKYHVDLICAILDKFNISNVSIYGKMDAFARKDQISEFRNKKCNVMVV 597

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLA+RG+D+P+V +V ++D P   + +IHR GRT RAGR G  + L+   +I ++  I 
Sbjct: 598 TDLASRGIDLPNVNNVIHYDYPASTKIFIHRSGRTARAGRKGNTYALMGMNEIMYVSEIM 657

Query: 362 KLIEKKV 368
            L  +K+
Sbjct: 658 VLAGRKL 664


>gi|229496684|ref|ZP_04390398.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316581|gb|EEN82500.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           endodontalis ATCC 35406]
          Length = 451

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 125/371 (33%), Positives = 213/371 (57%), Gaps = 11/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F D   + +V+  +    + +PTPIQ  TIP +L+  D+ G AQTGTGKTA+++LP++
Sbjct: 1   MNFFDFDFADEVLDGLDAMNFSEPTPIQEATIPPLLEGRDLLGCAQTGTGKTAAYLLPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI---PFEAQNK 117
             +  G       + +++ PTRELA Q+      +G   +++   + GG     +    +
Sbjct: 61  NRIYLGEFEEGYIKAIVMAPTRELAQQIDQQITGFGYFVSISSLAIYGGTDGSAWAQAQR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             ERG D+++ TPGR++   N     +++    VIDEADRMLDMGF   I +I   +P T
Sbjct: 121 GAERGTDIVVATPGRLISMLNLQAADISHTSYFVIDEADRMLDMGFYDDIMSICRHLPKT 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q  LFSATM  ++++++ + L++P  + +         ++  ++   AQ   K  ++  
Sbjct: 181 CQIALFSATMPPKIEELARSILKDPVHVAIAISKPPETILQSAYICYEAQ---KLPIVTD 237

Query: 238 LLQSQDTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           LL S    K    ++F + K  V  L  +L+ +G +V  +H ++DQ +R +++ +FK G 
Sbjct: 238 LLSSMSEEKPTKTVVFSSSKLKVHQLATALKSRGVNVAEMHSDLDQTTREQVMRDFKTGY 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKED 353
           ++++VA+D+ ARG+DI D+  V N+D+P+  E+Y+HRIGRT R   GR G A TLV +E+
Sbjct: 298 VEVLVATDIVARGIDIDDIKVVINYDMPHDPEDYVHRIGRTARGTDGR-GVAITLVNEEE 356

Query: 354 IKHIDAIEKLI 364
            +   A+E  +
Sbjct: 357 QRSFAALEHFL 367


>gi|260655032|ref|ZP_05860520.1| ATP-dependent RNA helicase [Jonquetella anthropi E3_33 E1]
 gi|260630347|gb|EEX48541.1| ATP-dependent RNA helicase [Jonquetella anthropi E3_33 E1]
          Length = 590

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 133/395 (33%), Positives = 207/395 (52%), Gaps = 20/395 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L   ++  +   G+ +PTP+Q   +       D+   A+TG+GKT +F+LP+L+ 
Sbjct: 7   FSDFPLVAPLIKELASRGFDEPTPVQRGVLGQDDWDRDLVVQARTGSGKTLAFLLPVLSE 66

Query: 63  LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L      GR  V+    LIL PTRELA Q+A     +G+   +  A+L+GG+  + Q   
Sbjct: 67  LASRLFPGRQTVK---ALILSPTRELAQQIAQEAASFGRLVGIGTAVLVGGMDMDRQISS 123

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G  + + TPGR+LDH  RG L ++ IE +V+DE D MLDMGF   ++ I       +
Sbjct: 124 LRSGVALAVGTPGRVLDHVKRGTLDLSEIETVVLDEGDTMLDMGFRDELEAILQAASARK 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQ 236
           +T LFSAT+  E+  V   F  NP  +  +  SS    I H    V +  +Y     L+ 
Sbjct: 184 RTWLFSATIPQEVTAVCRRFTTNPVFLSFDDESSQHSDIVHKAYLVPSSQRYE---GLVN 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL  + ++   +IFC  + +   +   L+K+GF    +HG++ QR R   LS+F+ G I
Sbjct: 241 VLLWERPSL--CLIFCRTRSDTAEVTERLQKEGFLAMPLHGDMSQRERNTALSSFRSGRI 298

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+++AARGLD+  V HV    VP   E ++HR GRTGRAG  G    ++   +   
Sbjct: 299 PVLVATNVAARGLDVSGVSHVIQLGVPESLETFVHRSGRTGRAGHEGTNLLVLTPAESSR 358

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
              + +  + KV WL        P  ++I + Q +
Sbjct: 359 FKFMMRSTQMKVQWLK------VPDFQEISVVQRS 387


>gi|71734717|ref|YP_272808.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555270|gb|AAZ34481.1| ATP-independent RNA helicase DbpA [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 479

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 133/377 (35%), Positives = 220/377 (58%), Gaps = 8/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 26  FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++  N+ V  L GG+ F  Q   LE 
Sbjct: 86  INP---RFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 143 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTL 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F+++P+ ++V    + ++ I+  F     +   + A+++ L   
Sbjct: 203 LFSATYPVGIKQLSSKFMRDPQTVKVEALHADSQ-IDQIFYEISPEQRLE-AVVKVLGHF 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 261 RPA--SCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 319 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           +L +  ++W   D  S+
Sbjct: 379 ELQKAPLNWQQYDQLSI 395


>gi|121607326|ref|YP_995133.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121551966|gb|ABM56115.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 609

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 147/434 (33%), Positives = 234/434 (53%), Gaps = 60/434 (13%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-------DVCGIAQTGTGKTASF 55
           F ++GL+P++V AV D GY  PT +Q K IPL +          D+   +QTG+GKTA++
Sbjct: 78  FIEMGLAPELVRAVADLGYTGPTIVQRKAIPLAMGAGHGATRFIDLMVSSQTGSGKTAAY 137

Query: 56  VLPMLTILEKGRARVR---------------------------------------MPRTL 76
           +LP+L  L   +A+V+                                        P  L
Sbjct: 138 LLPLLHTLIGQQAQVQAQERAALERAAADAATRDAPAPKRPKRKDPMHTRHFKAATPGAL 197

Query: 77  ILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           IL PTRELA QVA +     ++   L VA ++GG+P++ Q  KL+  A +++ TPGR+LD
Sbjct: 198 ILCPTRELAQQVAHDAIDLARHCRGLRVANVVGGMPYQMQIAKLQ-NASLVVATPGRLLD 256

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
                ++ ++ ++ LV+DEADRMLD+GF   +  I  L    +QT++FSAT    +Q+++
Sbjct: 257 LQRSMQIKLDKVQFLVVDEADRMLDLGFSDDLAEINQLTSQRQQTMMFSATFAPRIQQLA 316

Query: 196 ENFLQNP----KRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQSQDTMKN-GI 249
              + +     +++ +++P      I    + A  AQ+ +K  LL   L+  DT  N  I
Sbjct: 317 LRVMHDGGSSVQKLTIDSPQEKHANIRQMLYWADNAQHKRK--LLDHWLR--DTQINQAI 372

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           +F + +     L   L++ GFS  A+HG ++Q  R + L+  ++G +Q++VA+D+AARG+
Sbjct: 373 VFASTQVECDALAGELQQAGFSAVALHGALNQGLRNRRLTALRDGQVQILVATDVAARGI 432

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK--K 367
           D+P + HVFNF +P +AE+Y HRIGRTGRAGR G A +     D + I  IE    +  K
Sbjct: 433 DVPTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAISFAEFRDRRKIHDIESFSRQSFK 492

Query: 368 VDWLNGDLSSLNPP 381
            + + G   +  PP
Sbjct: 493 AEVIPGLEPAQRPP 506


>gi|116872882|ref|YP_849663.1| DEAD-box ATP dependent DNA helicase [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|315303187|ref|ZP_07873846.1| probable ATP-dependent RNA helicase YqfR [Listeria ivanovii FSL
           F6-596]
 gi|116741760|emb|CAK20884.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|313628444|gb|EFR96918.1| probable ATP-dependent RNA helicase YqfR [Listeria ivanovii FSL
           F6-596]
          Length = 435

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 134/381 (35%), Positives = 214/381 (56%), Gaps = 12/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G  P +  A+   G+ +PT +Q K IP +L+   + G +QTGTGKT +F+LP++  
Sbjct: 7   FDQFGFQPFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINN 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
           +   +  V+    +I  P+RELA Q+ +   K  K     + V L+IGG   +    KL+
Sbjct: 67  VNPEKDAVQ---AVITAPSRELATQIYNEIRKVTKFSEKEIAVQLVIGGTDKQRAIDKLK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++  + LVIDEAD  LDMGF+  + +I   +P   Q 
Sbjct: 124 KQPQIIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQM 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL- 239
           L+FSAT+  +L+     +++NP+   +    + ++T+EH  +AT ++   K  LL+ +L 
Sbjct: 184 LVFSATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSR--DKLDLLKNVLV 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            SQ  +   I+F N K     + + L ++G  V  IHG+++ R R + +   +    Q +
Sbjct: 242 GSQPYL--AIVFTNTKTTADEVANGLTERGLKVAKIHGDVNPRERKRTMKQIENLDYQYV 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+DI  + HV N+++P+  + YIHR GRTGRAG  G A TL    D   ++ 
Sbjct: 300 VATDLAARGIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQ 359

Query: 360 IEKL-IE-KKVDWLNGDLSSL 378
           +EK+ IE K VDW N +  +L
Sbjct: 360 LEKMGIEFKHVDWKNKEFVTL 380


>gi|171463843|ref|YP_001797956.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193381|gb|ACB44342.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 482

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 133/378 (35%), Positives = 214/378 (56%), Gaps = 18/378 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L+  ++  V + G+ + T +Q + IP  L   D+   +QTG+GKTA+F+LP++ 
Sbjct: 20  EFQNFALAASLLKNVAELGFTQATAVQAQVIPAALAGSDLLVNSQTGSGKTAAFLLPLIN 79

Query: 62  ILEK---------GRARVRMPRTLILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIP 111
            L +          RA+   P+ L+L PTRELA QVA D          + +A ++GG+P
Sbjct: 80  QLIEDNPNNSPVPSRAQ---PKVLVLCPTRELAQQVAADAVNLVRGMKGIRIATVMGGMP 136

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +  Q + L +GA +++ TPGR+LD  +   + +++++ LVIDEADRMLDMGF   ++ I 
Sbjct: 137 YGKQIQAL-KGALLVVATPGRLLDLCDSKAIRLDDVKQLVIDEADRMLDMGFADDLEAID 195

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSK 230
                  QTL+FSAT   ++  ++     N KRIE+         IE      +A   S 
Sbjct: 196 KRCAGRNQTLMFSATFAPKIMSLANELTTNAKRIELAHAGEKHANIEQKL--HWADSMSH 253

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K  LL+ +L   D +   ++F + +     +  +L   G+   A+HG + Q  RM+ L +
Sbjct: 254 KHKLLEHILADAD-LDQAVVFASTQVESEKIADTLRANGYEATALHGAMPQAVRMRRLES 312

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
            ++G  +++VA+D+AARG+D+P + HV NF +P + E+Y HRIGRTGRAGR+G A TLV 
Sbjct: 313 LRKGRTKILVATDVAARGIDVPRISHVINFGLPMKPEDYTHRIGRTGRAGRNGVAITLVE 372

Query: 351 KEDIKHIDAIEKLIEKKV 368
             D   I  IE+  ++ +
Sbjct: 373 HRDRAKIRNIERFTQQDI 390


>gi|115438787|ref|NP_001043673.1| Os01g0639100 [Oryza sativa Japonica Group]
 gi|75321708|sp|Q5VNM3|RH2_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 2
 gi|55297015|dbj|BAD68586.1| putative nicotiana eukaryotic translation initiation factor 4A
           [Oryza sativa Japonica Group]
 gi|55297606|dbj|BAD68952.1| putative nicotiana eukaryotic translation initiation factor 4A
           [Oryza sativa Japonica Group]
 gi|113533204|dbj|BAF05587.1| Os01g0639100 [Oryza sativa Japonica Group]
 gi|215707106|dbj|BAG93566.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222618929|gb|EEE55061.1| hypothetical protein OsJ_02769 [Oryza sativa Japonica Group]
          Length = 404

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 202/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G+   ++  +   G+ KP+ IQ + +  ++   DV   AQ+GTGKT+   L +  I
Sbjct: 33  FDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQI 92

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + LIL PTRELAAQ        G   N+ V   IGG       +KLE G
Sbjct: 93  VDTA---VREVQALILSPTRELAAQTERVMLAIGDFINIQVHACIGGKSIGEDIRKLEHG 149

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++L++DEAD ML  GF   I ++   +P   Q  L
Sbjct: 150 VHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQVCL 209

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 210 ISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL- 268

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   +    F+V A+HG++ Q+ R  I+  F+ G  +++
Sbjct: 269 ----TITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVL 324

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V KEDI+ +  
Sbjct: 325 ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILRD 384

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 385 IEQYYSTQIDEMPMNVADL 403


>gi|313633234|gb|EFS00103.1| probable ATP-dependent RNA helicase YqfR [Listeria seeligeri FSL
           N1-067]
 gi|313637832|gb|EFS03169.1| probable ATP-dependent RNA helicase YqfR [Listeria seeligeri FSL
           S4-171]
          Length = 435

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 134/381 (35%), Positives = 214/381 (56%), Gaps = 12/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G  P +  A+   G+ +PT +Q K IP +L+   + G +QTGTGKT +F+LP++  
Sbjct: 7   FDQFGFQPFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINN 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
           +   +  V+    +I  P+RELA Q+ +   K  K     + V L+IGG   +    KL+
Sbjct: 67  VNPEKDAVQ---AVITAPSRELATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++  + LVIDEAD  LDMGF+  + +I   +P   Q 
Sbjct: 124 KQPQIIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQM 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL- 239
           L+FSAT+  +L+     +++NP+   +    + ++T+EH  +AT ++   K  LL+ +L 
Sbjct: 184 LVFSATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSR--DKLDLLKNVLV 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            SQ  +   I+F N K     + + L ++G  V  IHG+++ R R + +   +    Q +
Sbjct: 242 GSQPYL--AIVFTNTKTTADEVANGLTERGLKVAKIHGDVNPRERKRTMKQIENLDYQYV 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+DI  + HV N+++P+  + YIHR GRTGRAG  G A TL    D   ++ 
Sbjct: 300 VATDLAARGIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQ 359

Query: 360 IEKL-IE-KKVDWLNGDLSSL 378
           +EK+ IE K VDW N +  +L
Sbjct: 360 LEKMGIEFKHVDWKNKEFVTL 380


>gi|169773155|ref|XP_001821046.1| ATP-dependent RNA helicase DBP10 [Aspergillus oryzae RIB40]
 gi|238491104|ref|XP_002376789.1| ATP dependent RNA helicase (Dbp10), putative [Aspergillus flavus
           NRRL3357]
 gi|91208275|sp|Q2UHC1|DBP10_ASPOR RecName: Full=ATP-dependent RNA helicase dbp10
 gi|83768907|dbj|BAE59044.1| unnamed protein product [Aspergillus oryzae]
 gi|220697202|gb|EED53543.1| ATP dependent RNA helicase (Dbp10), putative [Aspergillus flavus
           NRRL3357]
          Length = 929

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 136/396 (34%), Positives = 210/396 (53%), Gaps = 43/396 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIP+++   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 91  FQAMGLNAHLLKAITRKGFSVPTPIQRKTIPVIMDGQDVVGMARTGSGKTAAFVIPMIEK 150

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +V   R LIL P+RELA Q     ++ GK  +L   LL+GG   E Q   +   
Sbjct: 151 LKSHSTKV-GARGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFSLMAGN 209

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P  RQTLL
Sbjct: 210 PDIVIATPGRFLHLKVEMNLDLSSIRYVVFDEADRLFEMGFADQLTEILYGLPANRQTLL 269

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
           FSAT+   L + +   LQ P  I ++T S  +  +E+ F +  +   K+ ALL  L    
Sbjct: 270 FSATLPKSLVEFARAGLQEPTLIRLDTESKISPDLENVFFSVKSS-EKEGALLHILHEVI 328

Query: 239 -------------------------------------LQSQDTMKNGIIFCNQKKNVVNL 261
                                                 Q   T  + I+F   K +V  L
Sbjct: 329 KMPTGPTEAAQRQKEQGDGKNFKNFKKRKRGDDKAINFQESPTKYSTIVFAATKHHVDYL 388

Query: 262 CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321
              L + GF+V   +G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D
Sbjct: 389 YSLLREAGFAVSYAYGSLDQTARKIQVQNFRAGLSNILVVTDVAARGIDIPILANVINYD 448

Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            P++ + ++HR+GRT RAGR G +++LV   D  ++
Sbjct: 449 FPSQPKIFVHRVGRTARAGRKGWSYSLVRDADAPYM 484


>gi|239990555|ref|ZP_04711219.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
           11379]
          Length = 519

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 118/310 (38%), Positives = 185/310 (59%), Gaps = 6/310 (1%)

Query: 63  LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +E GRA+       P+ L++ PTREL  QV ++    GK  N+ V  + GG  +E Q + 
Sbjct: 7   VEAGRAKPEQLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEA 66

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G DV++ TPGR+LD   + KL +++I  LV+DEAD MLD+GF+P ++ I +++P  R
Sbjct: 67  LKKGVDVIVGTPGRLLDLAGQRKLDLSHIRGLVLDEADEMLDLGFLPDVERIITMLPAKR 126

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQ 237
           QT+LFSATM   +  ++  ++  P  I   +P     T+++     Y A    K  +L +
Sbjct: 127 QTMLFSATMPGAVISLARRYMSQPTHINATSPDDEGTTVKNTVQHVYRAHNMDKPEMLAR 186

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +LQ+ D     +IFC  K+   ++   LEK+GF+  A+HG++ Q +R + L  F+ G + 
Sbjct: 187 ILQA-DGRGLAMIFCRTKRTAADIAEQLEKRGFASGAVHGDLGQGAREQALRAFRNGKVD 245

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAG  G A TLV  +DI   
Sbjct: 246 VLVCTDVAARGIDVEGVTHVVNYQSPEDEKTYLHRIGRTGRAGAKGVAITLVDWDDIPRW 305

Query: 358 DAIEKLIEKK 367
             I K ++ K
Sbjct: 306 QLINKALDLK 315


>gi|254569806|ref|XP_002492013.1| RNA helicase in the DEAD-box family, involved in RNA isomerization
           at the 5' splice site [Pichia pastoris GS115]
 gi|238031810|emb|CAY69733.1| RNA helicase in the DEAD-box family, involved in RNA isomerization
           at the 5' splice site [Pichia pastoris GS115]
 gi|328351494|emb|CCA37893.1| ATP-dependent RNA helicase DDX23/PRP28 [Pichia pastoris CBS 7435]
          Length = 555

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 136/380 (35%), Positives = 207/380 (54%), Gaps = 23/380 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  +  +++  V   G+ +PTPIQ  +IPL L   D+ GIA+TG+GKT ++++P L  
Sbjct: 158 WGESNIKKEILDIVHSLGFDEPTPIQRASIPLALASRDLIGIAKTGSGKTLAYIIPALNY 217

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           L      E G    ++P+ LIL PTRELA QV   F+K+    +L +  LIGG   E   
Sbjct: 218 LLQLPHLESGD---QIPQVLILVPTRELALQVEKEFKKFTVKLDLNIISLIGGHSIEENV 274

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP- 175
             + RG ++++ TPGR+LD + R  + +     +V+DEADRM+DMGF   +  I  L+P 
Sbjct: 275 NSISRGCEIVVATPGRLLDCYERKMISLAECYYVVLDEADRMIDMGFEVQVLKILKLLPT 334

Query: 176 ----FT---RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
               FT   R T +F+ATM+  +QK+++N+L  P  + V    +  +T+          +
Sbjct: 335 DQNRFTSRPRNTFMFTATMSTAIQKITKNYLNQPGTLTVGELGTVVDTVTQ----EVRYF 390

Query: 229 SKKCALLQQLLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQ-GFSVCAIHGNIDQRSRMK 286
             + A L  L     + +   IIF N KK    L + L K    S   IHG+ +Q  R  
Sbjct: 391 PNENAKLNHLFSILPSFRPPIIIFVNYKKTCEFLQNQLSKNTALSSTVIHGSKNQDQREL 450

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            + N + G I +++A+DLA RG+DIP+V  V NF + N  ++Y HRIGRTGRAG  G + 
Sbjct: 451 AIQNLRSGKIDVLIATDLAGRGIDIPNVSLVVNFQMANGLDSYTHRIGRTGRAGNRGYSI 510

Query: 347 TLVAKEDIKHIDAIEKLIEK 366
           T +  ED +      KL+ K
Sbjct: 511 TYLGPEDSEIFSEFRKLLVK 530


>gi|225719408|gb|ACO15550.1| Eukaryotic initiation factor 4A-III [Caligus clemensi]
          Length = 403

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ ++I  +L+  DV   AQ+GTGKTA+F    ++I
Sbjct: 32  FDSMGLREDLLRGIYAYGFEKPSAIQQRSIKPILKGRDVIAQAQSGTGKTATF---SISI 88

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     +R  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 89  LQSIDTSLRETQCLVLSPTRELAVQIQKVLLALGDYMNVQCHACIGGTNLGEDIRKLDYG 148

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q  L
Sbjct: 149 QHVVSGTPGRVYDMIRRRTLRTRGIKMLVLDEADEMLNKGFKEQIYDVYRYLPPFTQICL 208

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 209 ISATLPHEILEMTSKFMADPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 267

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 268 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDVPQKERDDIMKEFRSGQSRVL 323

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 324 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRD 383

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 384 IEQYYSTQIDEMPMNVADL 402


>gi|121715182|ref|XP_001275200.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
 gi|134034067|sp|A1C5V3|DBP3_ASPCL RecName: Full=ATP-dependent RNA helicase dbp3
 gi|119403357|gb|EAW13774.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
          Length = 503

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 130/345 (37%), Positives = 195/345 (56%), Gaps = 11/345 (3%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVR--MPRT 75
           + +  PTPIQ  T PL+    DV GIA+TG+GKT +F LP L  IL+ G+ + +   P  
Sbjct: 103 SSFASPTPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKILDSGKIKFKNARPAA 162

Query: 76  LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           +I+ PTRELA Q+ D   KY  +  +    + GG+  + Q + L+  A +++ TPGR+ D
Sbjct: 163 VIISPTRELAMQIYDQISKYAGSIGIKATCIFGGVKKDEQREALKSAA-IVVATPGRLKD 221

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQTLLFSATMTDELQKV 194
             N G + +  ++ LV+DEADRMLD GF   I++I S  P + RQT++F+AT    ++ +
Sbjct: 222 LQNDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIISSTPDSKRQTVMFTATWPPSVRDL 281

Query: 195 SENFLQNPKRIEVNTPSST---AETIEHCFVATYAQYSKKCALLQQLLQSQ---DTMKNG 248
           +  F+ +   + +    S    A T     V     + K+  L+Q L ++Q     +   
Sbjct: 282 AATFMTSAVTVTIGGDPSADPRANTRIKQTVEVVQSHDKEYRLVQLLSENQRGAAALDKV 341

Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           ++FC  KK  + +   L  + F V  IHG+++Q  R K L  FK G   ++VA+D+AARG
Sbjct: 342 LVFCLYKKEAMRVERLLRNKNFKVAGIHGDLNQHERFKSLDAFKSGAATVLVATDVAARG 401

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           LDIP V  V N   P   E+Y+HRIGRTGRAG  G+A TL  + D
Sbjct: 402 LDIPSVKLVINVTFPLTVEDYVHRIGRTGRAGAEGRAITLFTETD 446


>gi|117919411|ref|YP_868603.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117611743|gb|ABK47197.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 443

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 215/378 (56%), Gaps = 16/378 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+LG++   +C+VL AG   PT +Q   IP +L   DV  ++QTG+GKT +F LP+L
Sbjct: 17  LTFAELGIN-SALCSVLPAGLKHPTRVQQLAIPAILAGRDVLALSQTGSGKTLAFGLPLL 75

Query: 61  TI----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN---LTVALLIGGIPFE 113
                 LE   +     + L+L PTRELA QV    +      +   L + LL GGI  E
Sbjct: 76  QAIHQQLESVSSSACKAQALVLVPTRELAQQVTMALQALATQLSPVPLNIQLLCGGIAQE 135

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q  +L     +++ TPGR+LD   +  + +++I+ LV+DEADR+L+MGF P +Q + ++
Sbjct: 136 EQLVELTAKPQLIVATPGRLLDLCTQSHISLDSIKYLVLDEADRLLEMGFWPDVQKLMAM 195

Query: 174 VPFTRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEH--CFVATYAQYSK 230
           +P  +QTLLFSAT+ + L  ++   L  NP+R+E +T ++ A  IE     V   ++   
Sbjct: 196 MPKRKQTLLFSATLPEALDSLAGKLLTNNPQRVEASTRNAVAADIEERLYLVNKGSKAQA 255

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             ALL+Q    Q      ++F + + +   +   L K G +  A+HG  DQ  R + L++
Sbjct: 256 LIALLKQYRWPQV-----LVFISARDDADAIAKRLLKAGINAAALHGEKDQTVRSQTLAD 310

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK   IQ++VA+DL ARG+ +  +  V N D+P  A  Y+HRIGRT RAG +G A +LV 
Sbjct: 311 FKAHRIQVVVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGANGLAISLVC 370

Query: 351 KEDIKHIDAIEKLIEKKV 368
             ++  + AI  L  +++
Sbjct: 371 HGEMLSLTAIRNLTAREL 388


>gi|289434733|ref|YP_003464605.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170977|emb|CBH27519.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 447

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 134/381 (35%), Positives = 214/381 (56%), Gaps = 12/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G  P +  A+   G+ +PT +Q K IP +L+   + G +QTGTGKT +F+LP++  
Sbjct: 19  FDQFGFQPFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINN 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
           +   +  V+    +I  P+RELA Q+ +   K  K     + V L+IGG   +    KL+
Sbjct: 79  VNPEKDAVQ---AVITAPSRELATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLK 135

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++  + LVIDEAD  LDMGF+  + +I   +P   Q 
Sbjct: 136 KQPQIIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQM 195

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL- 239
           L+FSAT+  +L+     +++NP+   +    + ++T+EH  +AT ++   K  LL+ +L 
Sbjct: 196 LVFSATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSR--DKLDLLKNVLV 253

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            SQ  +   I+F N K     + + L ++G  V  IHG+++ R R + +   +    Q +
Sbjct: 254 GSQPYL--AIVFTNTKTTADEVANGLTERGLKVAKIHGDVNPRERKRTMKQIENLDYQYV 311

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+DI  + HV N+++P+  + YIHR GRTGRAG  G A TL    D   ++ 
Sbjct: 312 VATDLAARGIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQ 371

Query: 360 IEKL-IE-KKVDWLNGDLSSL 378
           +EK+ IE K VDW N +  +L
Sbjct: 372 LEKMGIEFKHVDWKNKEFVTL 392


>gi|330837277|ref|YP_004411918.1| DEAD/DEAH box helicase domain-containing protein [Spirochaeta
           coccoides DSM 17374]
 gi|329749180|gb|AEC02536.1| DEAD/DEAH box helicase domain protein [Spirochaeta coccoides DSM
           17374]
          Length = 629

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 135/386 (34%), Positives = 212/386 (54%), Gaps = 24/386 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   V+  +  AG+    P+Q + +P+ L   DV   ++TG+GKTA F   ++
Sbjct: 1   MKFTELPLHHTVLEGIGQAGFSDCMPVQERVLPVSLAGKDVMIQSKTGSGKTAVF---LI 57

Query: 61  TILEK---------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVA 104
           TILEK                 A   +P  LI+ PTRELA Q+ ++            V 
Sbjct: 58  TILEKYVRAAEERAKAAKDSPEAEKSLPVALIVSPTRELAVQIEEDARILSATLPGYRVG 117

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
              GG+ +  Q+K +  G D+ + TPGR+LD+    +L     +  V+DEADRM DMGF 
Sbjct: 118 CFYGGVGYGGQDKLIAEGCDLYVGTPGRLLDYHKMRRLDFRMFDTFVVDEADRMFDMGFY 177

Query: 165 PYIQNI-TSLVPFT-RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           P IQ + +S+ P + RQT+LFSAT++  ++ ++ +++ +P+ IEV     T   I+    
Sbjct: 178 PDIQKMFSSMRPVSERQTMLFSATLSTRVRNLAWSYMSSPEEIEVQPEEITVNKIQQELY 237

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             +    +K  L  Q+L +++   N +IF N K   V +C  L   G+    + G++ Q+
Sbjct: 238 --HISKDEKFRLFLQVL-TKENPDNALIFTNTKAKSVEVCKRLLLNGYKAEYLMGDMPQK 294

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R+  +   K+G I+ +VA+D+AARGL I D+  V N+D+P   ENY+HRIGRT RAG+ 
Sbjct: 295 KRLSTIDRMKDGKIKFLVATDVAARGLQIDDLQLVVNYDIPEDFENYVHRIGRTARAGKT 354

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKV 368
           GK+ T   +E I  ++AIE  I+ K+
Sbjct: 355 GKSITFADEEYIYGLEAIENYIQMKI 380


>gi|195123476|ref|XP_002006232.1| GI18677 [Drosophila mojavensis]
 gi|193911300|gb|EDW10167.1| GI18677 [Drosophila mojavensis]
          Length = 787

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 140/395 (35%), Positives = 217/395 (54%), Gaps = 12/395 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP +  
Sbjct: 159 FYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTVER 218

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +      + R L+L PTREL AQV    ++  +  ++ V L IGG+  +AQ   L +
Sbjct: 219 LLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIEVGLAIGGLDVKAQETVLRQ 278

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I +    TRQT
Sbjct: 279 NPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQT 338

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM+++++ ++   L  P ++ VN     A  +   F+            +   L 
Sbjct: 339 MLFSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLI 398

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F   KK    L   L   G     +HGN+ Q+ R++ L  FKE  I +++
Sbjct: 399 CRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLI 458

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  I
Sbjct: 459 ATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDI 518

Query: 361 EKLIEKKV----------DWLNGDLSSLNPPLEKI 385
            K  E  V          +     L++L P ++ I
Sbjct: 519 IKNAESSVKNRIIPPEIIEKYRNKLTALEPEIQNI 553


>gi|312377148|gb|EFR24056.1| hypothetical protein AND_11649 [Anopheles darlingi]
          Length = 400

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 209/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F    ++I
Sbjct: 29  FNSMGLREELLRGIYAYGFEKPSAIQQRSIQPIVKGRDVIAQAQSGTGKTATF---SISI 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     +R  + L L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 86  LQSMDTTLRETQVLCLSPTRELAVQIQKVILALGDFMNIQCHACIGGTNLGEDIRKLDYG 145

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 146 QHVVSGTPGRVFDMIKRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 205

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 206 ISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 264

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R +I+  F+ G  +++
Sbjct: 265 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRSGQSRVL 320

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 321 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRD 380

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 381 IEQYYSTQIDEMPMNVADL 399


>gi|195332387|ref|XP_002032880.1| GM21012 [Drosophila sechellia]
 gi|194124850|gb|EDW46893.1| GM21012 [Drosophila sechellia]
          Length = 782

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 141/395 (35%), Positives = 216/395 (54%), Gaps = 12/395 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + LS  ++ A+   GY  PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP L  
Sbjct: 159 FYQMNLSRPLMRAIGVLGYTYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLER 218

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +      + R L+L PTREL AQV    ++  +  ++ V L IGG+  +AQ   L +
Sbjct: 219 LLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQ 278

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I +    TRQT
Sbjct: 279 NPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQT 338

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM+++++ ++   L  P ++ VN     A  +   F+            +   L 
Sbjct: 339 MLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLI 398

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F   KK    L   L   G     +HGN+ Q+ R++ L  FKE  I +++
Sbjct: 399 CRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLI 458

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  I
Sbjct: 459 ATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDI 518

Query: 361 EKLIEKK----------VDWLNGDLSSLNPPLEKI 385
            K  E            ++     L+SL P ++ I
Sbjct: 519 IKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNI 553


>gi|194747363|ref|XP_001956121.1| GF24750 [Drosophila ananassae]
 gi|190623403|gb|EDV38927.1| GF24750 [Drosophila ananassae]
          Length = 613

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 129/363 (35%), Positives = 201/363 (55%), Gaps = 5/363 (1%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--EKGRARVRMPRTLIL 78
           Y +PTPIQ +  P+ +  H++ GIA+TG+GKT +F+LP +  +  ++   R   P  L+L
Sbjct: 136 YTEPTPIQAQAWPIAMSGHNMVGIAKTGSGKTLAFILPAILHINGQQPLQRGDGPIALVL 195

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA Q+      +G +  +    + GG P   Q   LERG  ++I TPGR+LD   
Sbjct: 196 APTRELAQQIQSVANDFGSSAYVRNTCIFGGAPRSRQANDLERGVQIVIATPGRLLDFLQ 255

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
            G   +     LV+DEADRMLDMGF   I+ I   +   RQ L++SAT   E++K++E+F
Sbjct: 256 GGATNLKRCTYLVLDEADRMLDMGFEQQIRKILGQIRPDRQILMWSATWPKEVRKLAEDF 315

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA---LLQQLLQSQDTMKNGIIFCNQK 255
           L N  +I + +   +A      FV   A++ K      LL  +     +    IIF   K
Sbjct: 316 LGNYIQINIGSLELSANHNIRQFVEVCAEHEKGGKLKDLLSHIYDQSTSPGKIIIFVATK 375

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           K V  L   +   G  V +IHG+  Q  R  +L++F+ G   ++VA+D+AARGLD+  + 
Sbjct: 376 KKVDELARFINAFGVGVGSIHGDKSQMDRDSVLNDFRNGRHNILVATDVAARGLDVDGIK 435

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDL 375
           +V NFD P  +E+Y+HRIGRTGR    G ++    +++ K   A+ +++ +    +N +L
Sbjct: 436 YVINFDFPQSSEDYVHRIGRTGRKHSTGTSYAFFTRKNAKCARALIEILREANQNVNPEL 495

Query: 376 SSL 378
            S+
Sbjct: 496 ESM 498


>gi|119944643|ref|YP_942323.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119863247|gb|ABM02724.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 439

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 131/369 (35%), Positives = 215/369 (58%), Gaps = 5/369 (1%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           DL +  +++ ++   G+ + T IQ K +P+ +   D+   ++TG+GKT +++LP +  + 
Sbjct: 5   DLPVDRRLIISLSHLGFTETTEIQAKAVPIAVAGKDLLASSKTGSGKTLAYLLPAMQRVL 64

Query: 65  KGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
           K RA   R PR LIL PTRELA QV         N +L   L+ GG  F  Q K L++  
Sbjct: 65  KTRALTKRDPRVLILTPTRELAKQVYAQLRLLVSNTSLKSTLVSGGENFNDQVKALDKDP 124

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQTLL 182
             ++ TPGRI+DH  +G L +  +E+L++DEADRMLD+GF   ++ + S      RQTLL
Sbjct: 125 HFVVGTPGRIVDHLKKGLLHLEGLELLILDEADRMLDLGFAEQLKAVNSAANHRLRQTLL 184

Query: 183 FSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT+   E+ + +   L+ P RI +   +     I   F       ++K  LL   +++
Sbjct: 185 FSATLGHAEVNEFASELLKAPVRIAIGEENQQHSEISQRFYLA-DNLNQKEKLLFHFIKN 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++ +K  IIF   + +   L  +L ++G+   A+HG++ Q +R  I+ +F  G  QL+V 
Sbjct: 244 EE-IKQAIIFTATRLDAQRLSAALSEKGYGTLALHGDLTQNNRNSIMDSFSRGKAQLLVT 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLD+ +V HV NFD+P   E YIHRIGRTGRAG  G A +++  +D  +   +E
Sbjct: 303 TDIASRGLDLLNVSHVINFDIPKHTEEYIHRIGRTGRAGEKGDAISIIGPKDWVNFKKVE 362

Query: 362 KLIEKKVDW 370
           + +++++ +
Sbjct: 363 EFVQRQLTF 371


>gi|157278092|ref|NP_001098146.1| VASA [Oryzias latipes]
 gi|14522857|dbj|BAB61047.1| VASA [Oryzias latipes]
          Length = 617

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 209/361 (57%), Gaps = 18/361 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   +  +GYVKPTP+Q   +P++    D+   AQTG+GKTA+F+LP+L
Sbjct: 181 MTFEEAKLCESLENNISRSGYVKPTPVQKYGLPIISAGRDLMACAQTGSGKTAAFLLPIL 240

Query: 61  T-ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G A  R      P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 241 QQLMADGVAASRFSEIQEPEAVIVAPTRELINQIYQEARKFSFGTCVRPVVVYGGVNTGY 300

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q +++E+G +VL  TPGR+LD   RGK+ ++ +  LV+DEADRMLDMGF P ++ +    
Sbjct: 301 QMREIEKGCNVLCGTPGRLLDMIGRGKVGLSKVRHLVLDEADRMLDMGFEPDMRRLVGSP 360

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +++Q+++ +FL+ +   + V         +E  F+    +++
Sbjct: 361 GMPSKEERQTLMFSATFPEDIQRLAADFLKVDYLFVAVGVVGGACTDVEQTFLQV-TKFN 419

Query: 230 KKCALLQQL--LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
           K+  LL  L  + S+ TM    +F   K+    +   L ++     +IHG+ +QR R K 
Sbjct: 420 KREQLLDLLRTIGSERTM----VFVETKRQADFIAAFLCQEKVPTTSIHGDREQREREKA 475

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L++F+ G   ++VA+ +A+RGLDIPDV HV NFD+PN  ++Y+HRIGRTGR G  G+A +
Sbjct: 476 LADFRSGKCPVLVATSVASRGLDIPDVQHVVNFDLPNTIDDYVHRIGRTGRCGNTGRAVS 535

Query: 348 L 348
            
Sbjct: 536 F 536


>gi|218193167|gb|EEC75594.1| hypothetical protein OsI_12293 [Oryza sativa Indica Group]
          Length = 404

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 201/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G+   ++  +   G+ KP+ IQ + +  ++   DV   AQ+GTGKT+   L +  I
Sbjct: 33  FDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQI 92

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +      VR  + LIL PTRELAAQ        G   N+ V   IGG       +KLE G
Sbjct: 93  VNTA---VREVQALILSPTRELAAQTERVMLAIGDYINIQVHACIGGKSIGEDIRKLEHG 149

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++L++DEAD ML  GF   I ++   +P   Q  L
Sbjct: 150 VHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQVCL 209

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 210 ISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL- 268

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   +    F+V A+HG++ Q+ R  I+  F+ G  +++
Sbjct: 269 ----TITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVL 324

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V KEDI+ +  
Sbjct: 325 ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILRD 384

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 385 IEQYYSTQIDEMPMNVADL 403


>gi|328768329|gb|EGF78376.1| eIF4AIII protein [Batrachochytrium dendrobatidis JAM81]
          Length = 445

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 125/370 (33%), Positives = 199/370 (53%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +    + KP+ IQ + I  +L+  DV   AQ+GTGKTA+F + +L  
Sbjct: 42  FDQMGLKEDLLRGIFAYNFEKPSAIQQRAIAPILKGRDVIAQAQSGTGKTATFSISVLQT 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  R   R  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 102 IDTTR---RQTQALILSPTRELATQIQSVVLALGDYMNVQCHACIGGTSIGEDIRKLDHG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++L++DEAD ML  GF   I ++   +P + Q ++
Sbjct: 159 QHVVSGTPGRVFDMIKRRNLQTRDIKMLILDEADEMLSKGFKEQIYDVYRYLPPSTQVVI 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P R+ V     T E I+  FVA   +   +   C L   L 
Sbjct: 219 LSATLPHDVLDMTSKFMTDPVRVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL- 277

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V A+HG + Q+ R  I+  F+ G  +++
Sbjct: 278 ----TITQAVIFCNTRRKVDWLTEKMREANFTVAAMHGEMPQKERDAIMQEFRSGASRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  +D+  +  
Sbjct: 334 ITTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVKNDDVNILRD 393

Query: 360 IEKLIEKKVD 369
           IE+    ++D
Sbjct: 394 IEQYYSTQID 403


>gi|322792753|gb|EFZ16586.1| hypothetical protein SINV_00105 [Solenopsis invicta]
          Length = 643

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 128/368 (34%), Positives = 203/368 (55%), Gaps = 14/368 (3%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P ++  +    + KP+PIQ +  P++L   D+ GIAQTGTGKT +F+LP L  ++ G+  
Sbjct: 232 PDILTEIRKQNFEKPSPIQCQAWPILLSGRDLIGIAQTGTGKTLAFLLPALIHID-GQVT 290

Query: 70  VR----MPRTLILEPTRELAAQVADNFEKYG----KNY--NLTVALLIGGIPFEAQNKKL 119
            R     P  L++ PTRELA Q+     KY     K Y  N     + GG   +AQ   +
Sbjct: 291 PRDERPGPNVLVMAPTRELALQIEKEVAKYSYRGIKAYLKNYLRVCVYGGGSRKAQVATV 350

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  ++I TPGR+ D      L ++ +  L++DEADRMLDMGF P I+     V   RQ
Sbjct: 351 SSGVQIVIATPGRLNDLVQANILDVSAVTYLILDEADRMLDMGFEPQIRKTLLGVRPDRQ 410

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQL 238
           T++ SAT    ++++++++++NP ++ V +    A  +       Y     +K   + Q 
Sbjct: 411 TVMTSATWPQGVRRLAQSYMKNPLQVFVGSLDLAA--VHSVTQKIYMVDQDEKTEYMHQF 468

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            Q        I+F  +K  V ++   L        +IHG+ DQ  R + L + K GT+Q+
Sbjct: 469 FQEMGPHDKAIVFFGKKSKVDDISSDLALSNIECQSIHGDRDQADREQALEDLKSGTVQI 528

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RG+DI DV HV N+D P   E Y+HR+GRTGRAGR G++ T + ++D  H  
Sbjct: 529 LLATDVASRGIDIEDVTHVLNYDFPRDIEEYVHRVGRTGRAGRTGESITFMTRQDWHHAK 588

Query: 359 AIEKLIEK 366
           A+  ++E+
Sbjct: 589 ALIDILEE 596


>gi|224089849|ref|XP_002308835.1| predicted protein [Populus trichocarpa]
 gi|222854811|gb|EEE92358.1| predicted protein [Populus trichocarpa]
          Length = 556

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 130/369 (35%), Positives = 218/369 (59%), Gaps = 14/369 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++ ++LG+S ++V ++   G  K  PIQ   +   +Q  D+ G A+TGTGKT +F +P+L
Sbjct: 67  LEISNLGISKEIVNSLAKKGITKLFPIQKAVLEPAMQGKDMFGRARTGTGKTLAFGIPIL 126

Query: 61  -TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             I+E  K   + R P  +++ PTRELA QV   F     +  L    L GG+P  +Q +
Sbjct: 127 DKIIEFNKQHGKGRNPLAMVMAPTRELARQVQKEFHDSAPS--LDTICLYGGVPISSQMR 184

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +LE G DV++ TPGRI+D   RG L ++ I+ +V+DEAD+ML +GF+  I+ I S +P  
Sbjct: 185 ELEYGVDVVVGTPGRIIDLMKRGSLNLSEIKYVVLDEADQMLGVGFVDDIETILSRLPKK 244

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVAT--YAQYSKKCA 233
           R ++ FSATM   ++++   +L++P  I++  ++    A+ I    +A+  YA    K +
Sbjct: 245 RHSMCFSATMPSWIKQLVRKYLKDPLTIDLVGDSDRKLADGITLYSIASDMYA----KAS 300

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +L  L+         I+F   K++   L +++ K      A+HG+I Q  R + LS F+E
Sbjct: 301 ILGPLITEHAKGGKCIVFTETKRDADRLAYAMAKN-HKCEALHGDISQNVRERTLSGFRE 359

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+D+AARGLD+P+V  + ++ +P  +E ++HR GRTGRAG+ G A  +  ++D
Sbjct: 360 GHFNILVATDVAARGLDVPNVDLIIHYALPRCSETFVHRSGRTGRAGKKGTAILIYTQDD 419

Query: 354 IKHIDAIEK 362
            + +  IE+
Sbjct: 420 ARQVKLIER 428


>gi|118351203|ref|XP_001008880.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89290647|gb|EAR88635.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 643

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 133/370 (35%), Positives = 207/370 (55%), Gaps = 9/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + DLGL   ++ AV +  Y  PT IQ   IP  LQ  D+   + TG+GKTA+F++P+L  
Sbjct: 192 WQDLGLIKPLLKAVEEMQYEFPTNIQSLAIPAALQGKDLLASSLTGSGKTAAFLIPILQK 251

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             +        + LI+ PTRELA Q+ + F K  K   L   L+IG    + Q  +L   
Sbjct: 252 FYRS-PFTNYSKALIVTPTRELAFQIYEVFTKLNKYTKLRACLVIGQSAMQKQEAELRGN 310

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            +V+I TPGR++DH    + + ++N+E+L+ DEAD++LD+GF    QNI       RQTL
Sbjct: 311 PEVIIATPGRLIDHLQNSRSIDLDNLEVLIFDEADKLLDLGFEAAAQNIVENCNRERQTL 370

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+T E+ K+ +  L+ P RI+ N    T + +    +    +  ++ ALL   + +
Sbjct: 371 LFSATLTSEVNKLIDIALRKPIRIQANPDGQTNDKLIQKMLRIQHEDFREAALL--AIAA 428

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  IIF   K+    +       G  VC +HG++ Q  R++  S+FKEG  Q ++A
Sbjct: 429 KYYKERTIIFFKTKRQTHRMAIIFGLFGLKVCELHGDLTQNQRIQAFSDFKEGKYQYLMA 488

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI- 360
           +DLA+RGLDI  V  V NF++P+    YIHR+GRT RAG  G + T+    ++K +  + 
Sbjct: 489 TDLASRGLDIQGVKAVINFELPSEVTRYIHRVGRTARAGNEGISLTIGLDAELKTLKKML 548

Query: 361 ----EKLIEK 366
               +K++EK
Sbjct: 549 KENKDKMMEK 558


>gi|255942831|ref|XP_002562184.1| Pc18g03460 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586917|emb|CAP94570.1| Pc18g03460 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 790

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 125/378 (33%), Positives = 203/378 (53%), Gaps = 28/378 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  L  +++  V   GY  PT IQ   IP+ +Q  D+ G+A TG+GKTA+F+LP+L  
Sbjct: 359 WEESSLPKRLLELVERVGYKDPTAIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLVY 418

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +       E    +   P  ++L PTRELA Q+    +K+ +     V  ++GG   E Q
Sbjct: 419 ISALPRLDENEWRKNEGPYAIVLAPTRELAQQIEIEAKKFTQPLGFNVVSIVGGHSLEEQ 478

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +P
Sbjct: 479 AFSLRNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALP 538

Query: 176 FT--------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
            T                    RQT++++ATM   +++++  +L+ P  I +       +
Sbjct: 539 VTNEKPDTEEAENSMAMSQHQYRQTMMYTATMPAAVERIARKYLRRPAIITIGGVGEAVD 598

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
           T+E   V   +   K+   L ++L S D     I+F N K+N   +   +++ GFS   +
Sbjct: 599 TVEQR-VEMISGEDKRKKRLAEILSSGDFRPPIIVFVNIKRNCDAIAREIKQMGFSSVTL 657

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++    E+Y HRIGR
Sbjct: 658 HGSKTQDQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVINFNMATSIESYTHRIGR 717

Query: 336 TGRAGRHGKAFTLVAKED 353
           TGRAG+ G A T +  ED
Sbjct: 718 TGRAGKSGVAITFLGSED 735


>gi|308807146|ref|XP_003080884.1| DEAD box protein P68 (ISS) [Ostreococcus tauri]
 gi|116059345|emb|CAL55052.1| DEAD box protein P68 (ISS) [Ostreococcus tauri]
          Length = 571

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 127/366 (34%), Positives = 200/366 (54%), Gaps = 21/366 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D+ L   ++  +    Y KP+PIQ + IP++L   DV G A+TG+GKTA+F +PM+  
Sbjct: 113 FEDMELKRDILADIKFREYDKPSPIQAQAIPVILSGRDVLGCAETGSGKTAAFSIPMIQH 172

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFE 113
                 L +G      P  +++ PTRELA Q+   A  F +  K +    A+++GG    
Sbjct: 173 ALNQAPLRQGDG----PFAIVMAPTRELAQQIETEAKTFTRSSKGFR--TAIIVGGTNMS 226

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  G  +++ TPGR++DH  +G   +  +  +V+DEADRMLDMGF P I+ +   
Sbjct: 227 EQRSMLRGGVQIVVATPGRLIDHLQQGNTNLARVSFVVLDEADRMLDMGFEPQIREVLMN 286

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN-TPSSTAETIEHCFVATYAQYSKKC 232
           +P   QTLLFSATM  E++ ++ ++L  P +++V  T + TA   +       A+   + 
Sbjct: 287 LPKPHQTLLFSATMPVEVEALAADYLNKPVKVKVGQTSAPTANVSQQLEKVVDAEKVDRL 346

Query: 233 A--LLQQLLQSQD---TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
              L+ +  ++Q    +M   ++F  +K     +   L  +  S  A+HG   Q  R   
Sbjct: 347 VTMLISEQREAQKLGHSMPMTVVFVERKHRADEIAELLNAENVSAAALHGGRSQGEREAA 406

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L ++K G   ++VA+D+AARGLD+  V HV N D+P   E+Y+HRIGRTGRAG  G++ +
Sbjct: 407 LHDYKTGRCSVLVATDVAARGLDVKGVAHVVNLDLPRNFEDYVHRIGRTGRAGMSGRSTS 466

Query: 348 LVAKED 353
                D
Sbjct: 467 FYTDRD 472


>gi|296178353|dbj|BAJ07808.1| putative vasa protein [Oxycomanthus japonicus]
          Length = 851

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 139/361 (38%), Positives = 201/361 (55%), Gaps = 22/361 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +  L+  V   V+ A Y KPTP+Q   IP++    D+   AQTG+GKTA+F+LP+++ 
Sbjct: 416 FDECNLNETVRNNVMKAKYEKPTPVQKHGIPIIAAGRDLMACAQTGSGKTAAFLLPIISG 475

Query: 62  ILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           IL  G      + V+ P+ +I+ PTRELA Q+ +   K+  N  L   ++ GG   + Q 
Sbjct: 476 ILRDGVQSGSLSFVQTPQCIIVSPTRELAIQIFNEARKFSHNTILRPVVIYGGTSVQYQT 535

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             + +G  +L+ TPGR+ D  +R K+ +     LV+DEADRMLDMGF P ++ + +    
Sbjct: 536 NDVGKGCHILVGTPGRLQDFIDRQKISVEKCNYLVLDEADRMLDMGFGPAMERLVNNPNM 595

Query: 177 ----TRQTLLFSATMTDELQKVSENFLQNP-----KRIEVNTPSSTAETIEHCFVATYAQ 227
                RQTL+FSAT  DE+QK +  +L N       RI   TP      IE        Q
Sbjct: 596 PKKGDRQTLMFSATFPDEVQKRASEYLNNYLFLTIGRIGGATPDVEQRVIE------VDQ 649

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
           + KK  L++ L  S +  K  ++F   K++   L   L + GF   +IHG+  Q+ R + 
Sbjct: 650 FQKKDKLIEILHDSPEDDKT-LVFVETKRSADFLASLLSQSGFPTTSIHGDRMQKEREEA 708

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L +FK G   +MVA+ +AARGLDIP V HV N+D+P     Y+HRIGRTGR G  GKA +
Sbjct: 709 LRDFKTGRAPVMVATSVAARGLDIPKVKHVINYDLPEDISEYVHRIGRTGRVGNLGKATS 768

Query: 348 L 348
            
Sbjct: 769 F 769


>gi|145614688|ref|XP_361928.2| hypothetical protein MGG_11403 [Magnaporthe oryzae 70-15]
 gi|152032666|sp|A4RN46|PRP5_MAGO7 RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|145021588|gb|EDK05717.1| hypothetical protein MGG_11403 [Magnaporthe oryzae 70-15]
          Length = 1012

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 210/368 (57%), Gaps = 10/368 (2%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           GL+  ++  +    Y KPT IQ++ +P+++   DV G+A+TG+GKT +F+LPM   + K 
Sbjct: 384 GLTRPILDVIAKLEYDKPTAIQMQALPVIMSGRDVVGVAKTGSGKTMAFLLPMFRHI-KD 442

Query: 67  RARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
           +  V+    P  LIL PTRELA Q+  + + + K   L      GG P + Q   L+RGA
Sbjct: 443 QEPVKDNEGPIGLILTPTRELAVQIFRDCKPFLKTLGLRAVCAYGGPPIKDQIADLKRGA 502

Query: 124 DVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           ++++ T GR++D    N+G+++ +     +V+DEADRM DMGF P +  I + V   RQT
Sbjct: 503 EIVVATTGRMIDLLAANQGRVVSLRRTTYIVLDEADRMFDMGFEPQVMKIFANVRPDRQT 562

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCALLQQL 238
           +LFSATM   +  + +  L+NP  IEV   S  A  I          +++++   LL +L
Sbjct: 563 VLFSATMPKIMDALVKKVLKNPVEIEVGGKSVVASEITQIVEIRDEKSKFNRLLELLGEL 622

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +  D +++ +IF  +++    L   L ++G+   ++HG  DQ  R   +S+FK G   +
Sbjct: 623 YKDDDDVRS-LIFVERQEKADELLRELLRKGYGCMSLHGGKDQVDRDSTISDFKSGVCPV 681

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T V +E      
Sbjct: 682 MIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFVTEEQENCAI 741

Query: 359 AIEKLIEK 366
            I K +E+
Sbjct: 742 GIAKALEQ 749


>gi|145240463|ref|XP_001392878.1| ATP-dependent RNA helicase DBP10 [Aspergillus niger CBS 513.88]
 gi|134034062|sp|A2QRY2|DBP10_ASPNC RecName: Full=ATP-dependent RNA helicase dbp10
 gi|134077396|emb|CAK40010.1| unnamed protein product [Aspergillus niger]
          Length = 932

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 134/397 (33%), Positives = 212/397 (53%), Gaps = 44/397 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIP++++  DV G+A+TG+GKTA+FV+PM+  
Sbjct: 92  FQAMGLNANLLKAITRKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIQK 151

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +V   R LIL P+RELA Q     ++ GK  +L   LL+GG   E Q   +   
Sbjct: 152 LKSHSTQV-GARGLILSPSRELALQTLKVVKELGKGTDLKAVLLVGGDSLEEQFSMMAGN 210

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P TRQTLL
Sbjct: 211 PDIVIATPGRFLHLKVEMNLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPSTRQTLL 270

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
           FSAT+   L + +   LQ P  + ++T S  +  +++ F +  +   K+ AL+  L    
Sbjct: 271 FSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQNAFFSVKSG-DKEGALMYILHNVI 329

Query: 239 --------------------------------------LQSQDTMKNGIIFCNQKKNVVN 260
                                                  +   T  + IIF   K +V  
Sbjct: 330 KMPTGPTEAAQRMKEENASGKSSKFSKKRKRSDDKAINFKESPTKHSTIIFAATKHHVDY 389

Query: 261 LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNF 320
           L   L + GF+    +G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+
Sbjct: 390 LYSLLNEAGFATSYAYGSLDQTARKIQVHNFRTGISNILVVTDVAARGIDIPILANVINY 449

Query: 321 DVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           D P++A+ ++HR+GRT RAGR G +++LV   D  ++
Sbjct: 450 DFPSQAKIFVHRVGRTARAGRTGWSYSLVRDSDAPYL 486


>gi|123455589|ref|XP_001315537.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121898217|gb|EAY03314.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 598

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 137/391 (35%), Positives = 215/391 (54%), Gaps = 19/391 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F +L L   +   + D  + KPTPIQ  +IP+ L+ HD+ GIA+TG+GKTA+F++P M
Sbjct: 125 LTFEELNLPDTITKTITDNKWEKPTPIQSVSIPVALKGHDLIGIAKTGSGKTAAFLIPAM 184

Query: 60  LTI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + I L++   R   P  L+L PTRELA Q+A+  + +  N  +    L GG     Q   
Sbjct: 185 VHIGLQEPMYRGDGPIVLVLSPTRELAQQIAEVAKGFCDNLMIRQTCLFGGAGRGPQAND 244

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L     +++ TPGR++D    G+  MN +  LV+DEAD+MLDMGF P I+ I   +   R
Sbjct: 245 LRHLPSLVVATPGRLIDFIEGGQCPMNRVNFLVLDEADQMLDMGFEPQIRKIIGHISKDR 304

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRI-----EVNTPSSTAETIEHCFVATYAQYSKKCA 233
           QT++FSAT   E+Q+++ +FL +P  +     ++ T S+  + I  C      ++ K   
Sbjct: 305 QTMMFSATWPKEIQQLAADFLVDPVHMIIGNKDLTTNSNIKQVITKC-----EEFEKLSK 359

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L+ L + +D     IIF   K+   +L  +L  +GF   ++HG+  Q  R  +L  F+ 
Sbjct: 360 CLEVLNEHKDDKI--IIFTKTKRTTDDLQENLNMKGFQAYSLHGDKAQNQRDFVLGKFRS 417

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
               ++VA+D+AARGLD+ D+  V N+D P   E Y+HRIGRT R  + G A T    E+
Sbjct: 418 CKKGILVATDVAARGLDVNDIDIVINYDFPGDIETYVHRIGRTARGNKEGLAVTFFTDEN 477

Query: 354 IKHIDAIEKLI----EKKVDWLNGDLSSLNP 380
                 + K++    ++  DWL   L+ + P
Sbjct: 478 KNMSRKLAKIMTQAKQELPDWLKA-LADVTP 507


>gi|260772127|ref|ZP_05881044.1| ATP-dependent RNA helicase DbpA [Vibrio metschnikovii CIP 69.14]
 gi|260612994|gb|EEX38196.1| ATP-dependent RNA helicase DbpA [Vibrio metschnikovii CIP 69.14]
          Length = 389

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 120/310 (38%), Positives = 191/310 (61%), Gaps = 9/310 (2%)

Query: 74  RTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
           + L+L PTRELA QVA      G+  +N+ +  L GG+P   Q   LE GA +L+ TPGR
Sbjct: 2   QALVLCPTRELADQVATEIRTLGRAIHNIKILTLCGGMPMGPQIGSLEHGAHILVGTPGR 61

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           ILDH  +G++ ++ +  LV+DEADRML+MGF   +  I +  P  RQTLLFSAT   +++
Sbjct: 62  ILDHLEKGRIDLSELNTLVLDEADRMLEMGFQDALDAIIAQAPTVRQTLLFSATFPAQIK 121

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           +V+E  ++NP+ ++V +  S+  TI+  F       ++  AL Q LL  Q   ++ ++FC
Sbjct: 122 QVAERIMRNPEMVKVESTHSST-TIKQYFYKLEGAEARDKALAQLLLHHQP--ESAVVFC 178

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
           N KK V ++   L+ +GFSV  +HG+++QR R + L  F   +I ++VA+D+AARGLD+ 
Sbjct: 179 NTKKEVTHVAEQLKHKGFSVIELHGDLEQRDRDQALVQFANKSISILVATDVAARGLDVD 238

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD--- 369
           ++  VFNF++    E ++HRIGRTGRAG  G A +  +  ++  +  I++ ++  ++   
Sbjct: 239 NLDAVFNFELSRDPEVHVHRIGRTGRAGSQGLAISFFSDNEMHRVAMIDEYMDMPIEPAQ 298

Query: 370 WLNGDLSSLN 379
           W   D+S  N
Sbjct: 299 W--PDMSGQN 306


>gi|224073176|ref|XP_002304009.1| predicted protein [Populus trichocarpa]
 gi|222841441|gb|EEE78988.1| predicted protein [Populus trichocarpa]
          Length = 427

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 134/354 (37%), Positives = 195/354 (55%), Gaps = 30/354 (8%)

Query: 45  AQTGTGKTASFVLPMLTILEKGR----------ARVRMPRTLILEPTRELAAQVADNFEK 94
           AQTG+GKTA+F  P+++ + K +          AR   P  LIL PTREL+ Q+ +   K
Sbjct: 4   AQTGSGKTAAFCFPIISGIMKMQDQSAQRPPRGARTVYPLALILSPTRELSMQIHEEARK 63

Query: 95  YGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDE 154
           +     + V +  GG P   Q ++LERG D+L+ TPGR++D   R ++ +  I+ L +DE
Sbjct: 64  FSYQTGVKVVVAYGGAPIHQQLRELERGVDILVATPGRLVDLLERARVSLQMIKYLALDE 123

Query: 155 ADRMLDMGFIPYIQNITSLV----PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           ADRMLDMGF P I+ I   +    P  RQT+LFSAT   E+Q+++ +FL     + V   
Sbjct: 124 ADRMLDMGFEPQIRKIVEQMDMPRPGLRQTMLFSATFPKEIQRLASDFLSTYIFLAVGRV 183

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI--------IFCNQKKNVVNLC 262
            S+ + I       Y     K + L  LL +Q    NG+        +F   KK   +L 
Sbjct: 184 GSSTDLIVQRVEFVYE--PDKRSHLMDLLHAQRA--NGVQGKQALTLVFVETKKGADSLE 239

Query: 263 HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322
           H L   GF   +IHG+  Q+ R + L +FK G   ++VA+D+AARGLDIP V HV NFD+
Sbjct: 240 HWLCINGFPATSIHGDRSQQEREQALRSFKTGNTPILVATDVAARGLDIPHVAHVVNFDL 299

Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK----VDWLN 372
           PN  ++Y+HRIGRTGRAG  G A     + +      + +L+++      DWL+
Sbjct: 300 PNDIDDYVHRIGRTGRAGNSGLATAFFNEGNASMARPLSELMQEANQEVPDWLS 353


>gi|332028589|gb|EGI68626.1| Putative ATP-dependent RNA helicase DDX43 [Acromyrmex echinatior]
          Length = 660

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 123/361 (34%), Positives = 201/361 (55%), Gaps = 7/361 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG--- 66
           P ++  +    + KP+PIQ +  P++L   D+ GIAQTGTGKT +F+LP L  ++     
Sbjct: 260 PDILTEIRKQNFEKPSPIQCQAWPILLSGQDLIGIAQTGTGKTLAFLLPALIHIDGQVTP 319

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L++ PTRELA Q+     KY   + +    + GG   + Q   + +G  ++
Sbjct: 320 RDKRTGPNVLVMAPTRELALQIEKEVGKYSY-HGIKAVCVYGGGNRKTQIDTVTKGVQIV 378

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      L ++ +  L++DEADRMLDMGF P I+     V   RQT++ SAT
Sbjct: 379 IATPGRLNDLVQANVLDVSAVTYLILDEADRMLDMGFEPQIRKTLLGVRPNRQTVMTSAT 438

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQSQDTM 245
               ++++++++++NP  I+V   S     +       Y A   +K  ++ Q  Q     
Sbjct: 439 WPQGVRRLAQSYMKNP--IQVFVGSLDLAAVHSVTQRIYMANEDEKTDMMHQFFQEMGPQ 496

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F  +K  V ++   L        +IHG+ DQ  R + L + K G +Q+++A+D+A
Sbjct: 497 DKVIVFFGKKSKVDDVSSDLALTNIDCQSIHGDRDQSDREQALEDLKTGAVQILLATDVA 556

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RG+DI D+ HV N+D P   E Y+HR+GRTGRAGR G++ T + ++D  H  A+  ++E
Sbjct: 557 SRGIDIEDITHVLNYDFPRDIEEYVHRVGRTGRAGRTGESITFMTRQDWHHAKALIDILE 616

Query: 366 K 366
           +
Sbjct: 617 E 617


>gi|226366440|ref|YP_002784223.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
 gi|226244930|dbj|BAH55278.1| putative ATP-dependent RNA helicase [Rhodococcus opacus B4]
          Length = 645

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 127/349 (36%), Positives = 191/349 (54%), Gaps = 7/349 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++GL   +V A+       P+PIQ  ++P  L   +V G AQTG+GKT +F LPML  
Sbjct: 34  FAEIGLPAPLVQALARNSITVPSPIQALSVPDALAGTNVLGRAQTGSGKTLAFGLPMLAR 93

Query: 63  LEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L +   R   + PR L+L PTRELA QV D+   Y     LTV   +GG PF  Q  +L 
Sbjct: 94  LARHEDRPAAKRPRALVLVPTRELAFQVVDSLNSYAGAMGLTVRPAVGGTPFTKQVDQLR 153

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+ DH  +G  +++++EI  +DEAD+M DMGF+P +++I    P   Q 
Sbjct: 154 RGVDILVATPGRLGDHLRQGTCILDSVEITALDEADQMADMGFLPEVRSILGETPADGQR 213

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  E+Q +   FL +  +       ++ +T+EH  +       +K  +L ++  
Sbjct: 214 LLFSATLDREVQSLVRQFLPDHVQHSTEDGRASVDTMEHYVL--LVDRGQKDNVLAEIGA 271

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      I+F   K     +   L   G +  A+HG   Q  R ++L  FK G   ++V
Sbjct: 272 REGRT---IMFARTKLGCEGITDRLRAVGIAAEALHGGKAQNQRTRVLERFKNGRTPVLV 328

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           A+D+AARG+ +  +  V + D P   ++Y+HR GRT RAG  G    +V
Sbjct: 329 ATDVAARGIHVDGIDLVVHVDPPADHKDYLHRAGRTARAGEKGTVVAIV 377


>gi|159475485|ref|XP_001695849.1| hypothetical protein CHLREDRAFT_118630 [Chlamydomonas reinhardtii]
 gi|158275409|gb|EDP01186.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 710

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 133/387 (34%), Positives = 219/387 (56%), Gaps = 17/387 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   GLS +++  +   G+ +P PIQ + +P+++   D  GIA+TG+GKT +FVLPM+  
Sbjct: 56  WTQAGLSSRILEVLKKRGFDRPLPIQAQALPIIMSGRDCIGIAKTGSGKTGAFVLPMMRH 115

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  L++ PTREL AQ+A   + + K   L    + GG     Q 
Sbjct: 116 IKDQRPLEQGDG----PVALVIAPTRELVAQIAKEAKAFAKPLGLNALAVFGGSGVANQI 171

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RG +++ CTPGR++D    + GK+  +  +  LV+DEADRM DMGF P I  I   
Sbjct: 172 TELKRGVEIVACTPGRMIDLLVTSNGKITNLRRVTYLVMDEADRMFDMGFEPQISRIIQN 231

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +   RQT++FSAT    ++ ++   LQ+P  I+V   S   ++I   +V    +  +   
Sbjct: 232 IRPDRQTVMFSATFPRAVEALARKVLQDPVEIQVGGRSVVNDSITQ-WVELRPEKERFHR 290

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL+ L +  +  K  +IF +++++  NL   L + G+   ++HG  DQ  R   +++FK 
Sbjct: 291 LLEILGEWYERGKL-LIFVDKQESCDNLFRDLLRYGYPCLSLHGGKDQSDRESTIADFKG 349

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR--IGRTGRAGRHGKAFTLVAK 351
               ++VA+ +AARGLD+ D+  V N+DVPN  E+Y+HR  +GRTGRAG  G A T +++
Sbjct: 350 AVCNILVATSIAARGLDVKDLVLVVNYDVPNHHEDYVHRCVVGRTGRAGAKGTAITFISE 409

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           E+ ++   + K + +    +  DL +L
Sbjct: 410 EEERYAPDLVKALRESGAPVPQDLQAL 436


>gi|330796382|ref|XP_003286246.1| hypothetical protein DICPUDRAFT_54136 [Dictyostelium purpureum]
 gi|325083751|gb|EGC37195.1| hypothetical protein DICPUDRAFT_54136 [Dictyostelium purpureum]
          Length = 630

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 125/384 (32%), Positives = 206/384 (53%), Gaps = 38/384 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  L  +V+ AV   GY KP+PIQ+++IP+ +   D+ GIA+TG+GKT +FV+PM   
Sbjct: 212 WQESSLPRQVLDAVRHLGYEKPSPIQMQSIPVSVSGRDILGIAETGSGKTCAFVIPMCIY 271

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + K            P  +++ PTREL  Q+      + + Y   V  L+GG P E Q  
Sbjct: 272 ISKQPRLTKETEAEGPYAVVMAPTRELVQQIEKETRNFAQFYGFRVVSLVGGQPIEEQAY 331

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L +G ++++ TPGR+ D   +  L++N    +V+DEAD M+++GF   + ++   +P T
Sbjct: 332 QLGKGCEIVVATPGRLNDCLQKRYLVLNQCNYIVLDEADMMINLGFESQVTSVLDAMPST 391

Query: 178 ---------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
                                R T+LFSATM  +++++++ +L+ P  I +       + 
Sbjct: 392 NLKSENEELAERQETDRERVYRTTILFSATMPPQVEQIAKKYLRRPCTITIGEAGKVVDR 451

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNG-----IIFCNQKKNVVNLCHSLEKQGFS 271
           I    +   ++  KK  L+Q        +K+G     IIF N+KK+  N+   LE+ G S
Sbjct: 452 IRQTVIFVKSENDKKEHLVQ-------LIKDGPPPPIIIFVNKKKHCENIGAVLEECGVS 504

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
              +HG   Q  R   L NFK+    +++A+ +A+RG+ +  V HV NFD+PN  E+Y H
Sbjct: 505 YTILHGGRSQEQREAALDNFKKKNSDVLIATGVASRGIHVDGVTHVINFDIPNNIEDYTH 564

Query: 332 RIGRTGRAGRHGKAFTLVAKEDIK 355
           RIGRTGRAG  G A + ++ +D +
Sbjct: 565 RIGRTGRAGSSGLATSFISDKDTE 588


>gi|195581486|ref|XP_002080565.1| GD10546 [Drosophila simulans]
 gi|194192574|gb|EDX06150.1| GD10546 [Drosophila simulans]
          Length = 782

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 141/395 (35%), Positives = 216/395 (54%), Gaps = 12/395 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + LS  ++ A+   GY  PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP L  
Sbjct: 159 FYQMNLSRPLMRAIGVLGYTYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLER 218

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +      + R L+L PTREL AQV    ++  +  ++ V L IGG+  +AQ   L +
Sbjct: 219 LLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQ 278

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I +    TRQT
Sbjct: 279 NPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQT 338

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM+++++ ++   L  P ++ VN     A  +   F+            +   L 
Sbjct: 339 MLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLI 398

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F   KK    L   L   G     +HGN+ Q+ R++ L  FKE  I +++
Sbjct: 399 CRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLI 458

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  I
Sbjct: 459 ATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDI 518

Query: 361 EKLIEKK----------VDWLNGDLSSLNPPLEKI 385
            K  E            ++     L+SL P ++ I
Sbjct: 519 IKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNI 553


>gi|221131953|ref|XP_002164829.1| PREDICTED: similar to LOC556764 protein [Hydra magnipapillata]
          Length = 674

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 208/375 (55%), Gaps = 19/375 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +L +   V  A+    + +PT IQ +   + L   ++ GIAQTG+GKT SFVLP +  
Sbjct: 108 FDELCIPDYVGDALRKFNFKEPTAIQSQGFSVALSGRNMVGIAQTGSGKTISFVLPAVIH 167

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L +G      P  L+L PTRELA QV     ++G    +    + GG     Q 
Sbjct: 168 INNQPPLNQGDG----PICLVLCPTRELAIQVQSVAGQFGLTTRVRSTCIYGGASKGPQI 223

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + LERG+++++ TPGR++D     K+ +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 224 RDLERGSEIVVATPGRLIDLIEIRKISLKRVTYLVLDEADRMLDMGFEPQIRKIIDQIRP 283

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKK 231
            RQ L++SAT   E++K++E+FL +  +I + +    A     + ++ C    Y +  K 
Sbjct: 284 DRQVLMWSATWPKEVRKLAEDFLTDYIQINIGSSDIHANHNILQIVDVC--EEYEKDRKL 341

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL++++  ++     IIFC  K+   ++   L K G+    IHG+  Q  R  +L  F
Sbjct: 342 VKLLEEIMGEKENKT--IIFCETKRKTDDITRRLRKDGWPAMCIHGDKSQPEREWVLKEF 399

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G   +++A+D+A+RGLDIPD+  V N+D PN  E+YIHRIGRT RAG  G A+T    
Sbjct: 400 RSGKAPILIATDVASRGLDIPDINFVVNYDYPNSGEDYIHRIGRTARAGNTGTAYTFFTS 459

Query: 352 EDIKHIDAIEKLIEK 366
            + K+   + K++E+
Sbjct: 460 ANGKYAAELLKVMEE 474


>gi|170578019|ref|XP_001894230.1| eukaryotic initiation factor 4A [Brugia malayi]
 gi|158599270|gb|EDP36940.1| eukaryotic initiation factor 4A, putative [Brugia malayi]
          Length = 413

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 208/377 (55%), Gaps = 9/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++GL   ++  +   G+ KP+ IQ + I    ++ DV   AQ+GTGKTA+F + +L 
Sbjct: 45  NFDEMGLKENLLRGIYAFGFEKPSAIQQRAIIPCTKKRDVIAQAQSGTGKTATFSVAVLQ 104

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++    V+    L++ PTRELA Q+       G+   +     IGG       +KLE 
Sbjct: 105 NIDETIPEVQ---ALVMAPTRELAQQIQKVMLSLGEYLGVKCHASIGGTNVRDDQRKLES 161

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  NNI++ V+DEAD ML  GF   I ++   +P   Q +
Sbjct: 162 GVHVVVGTPGRVNDMITRQSLQTNNIKMFVLDEADEMLSRGFKEQIYDVFKCMPSDVQVV 221

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+ +V+  F+ +P RI V     T E I   ++  + ++   C L   +  +
Sbjct: 222 LLSATMPSEVLEVTNRFMNDPIRILVKREELTLEGIRQFYINEW-KFETLCDLYSTVNVT 280

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q      +IFCN ++ V  L   + K+ ++V  +HG ++Q  R  I+  F+ G+ ++++ 
Sbjct: 281 Q-----AVIFCNTRRKVDYLAAQMSKEKYTVSCMHGEMEQNERDVIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   + + D++ +  IE
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFITETDMRMMKDIE 395

Query: 362 KLIEKKVDWLNGDLSSL 378
                +++ +  D+++L
Sbjct: 396 SFYNTQIEEMPMDIANL 412


>gi|300121126|emb|CBK21507.2| unnamed protein product [Blastocystis hominis]
          Length = 518

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 136/362 (37%), Positives = 201/362 (55%), Gaps = 19/362 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
           +F++  +   ++  ++   Y +PTP+Q   + +     D+   AQTG+GKTA F+ P++ 
Sbjct: 137 EFSEEYIPKSLLDNIIRCDYRRPTPVQKYGLAIGCIGRDLMACAQTGSGKTAGFLFPIII 196

Query: 61  TILEKGRARVRMP---------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
           ++L  G ++  +P           LIL PTRELA Q+    +++     +  A++ GG P
Sbjct: 197 SMLRNGPSKAPLPDDYGDRYFPTCLILSPTRELALQIYQESQRFCYCTGIASAVVYGGTP 256

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
                  L  G D+L+ TPGR+ D   RG L +  I  LV+DEADRMLDMGF P I++I 
Sbjct: 257 MREVLDSLRSGCDILVGTPGRVKDMIQRGILGLEGITHLVLDEADRMLDMGFEPQIRDIV 316

Query: 172 --SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
             S +P  RQTL+FSAT  DE+Q+++ +FL +   + V      A+ IE   +  Y + +
Sbjct: 317 EQSGMPRNRQTLMFSATFPDEIQRLAGDFLIDYVFLAVGRVGGAAQDIEQRVI--YVEDA 374

Query: 230 KKCALLQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
            K + L   L   +   NG  +IF   K+    L   L  Q F   +IHG+  Q  R   
Sbjct: 375 DKDSYL---LHELENWGNGRILIFVETKRKADILQRYLTTQHFQAASIHGDRSQADREDA 431

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           LS FK   +Q++VA+D+AARGLDIPDV  V N+D P   E+Y+HRIGRTGRAG  G A +
Sbjct: 432 LSAFKLNRVQILVATDVAARGLDIPDVSLVINYDTPQNIEDYVHRIGRTGRAGNTGVAIS 491

Query: 348 LV 349
            +
Sbjct: 492 FI 493


>gi|147861063|emb|CAN78736.1| hypothetical protein VITISV_003102 [Vitis vinifera]
 gi|297743544|emb|CBI36411.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 140/404 (34%), Positives = 223/404 (55%), Gaps = 30/404 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     ++  +   G V+PTPIQ++ +P++L   D+ GIA TG+GKT  FVLP++ 
Sbjct: 143 NFKDMRFPEPILKNLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPLIM 202

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
           +  +    + +     P  L++ P+RELA Q  +  E++           L   L IGG+
Sbjct: 203 VALQEEVSMPIVPGEGPFGLVICPSRELARQTYEVVEQFLVPMRECGYPELRPLLCIGGV 262

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + +++G  +++ TPGR+ D   + KL ++N   L +DEADR++D+GF   I+ +
Sbjct: 263 DMRSQLEVVKKGVHIIVATPGRLKDMLAKKKLNLDNCRYLTLDEADRLVDLGFEDDIREV 322

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q  + + L  P  + VN   + A  ++   V    +Y K
Sbjct: 323 FDHFKAQRQTLLFSATMPTKIQNFARSALVKP--VTVNVGRAGAANLD---VIQEVEYVK 377

Query: 231 KCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A +  LL+  Q T    +IFC  K +V ++   L  +G    AIHG  DQ  R   +S
Sbjct: 378 QEAKIVYLLECLQKTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAIS 437

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T +
Sbjct: 438 SFKAGKKDVLVATDVASKGLDFPDIKHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 497

Query: 350 AKE-------DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
            K        D+KH      L+++    +   L+ LN P+E +D
Sbjct: 498 NKNQSETTLLDLKH------LLQEAKQRIPPVLAELNDPMEDVD 535


>gi|328771122|gb|EGF81162.1| hypothetical protein BATDEDRAFT_10391 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 521

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 209/376 (55%), Gaps = 18/376 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA  G    ++  ++  GY +PT IQ + +P+ L  HD+ GIAQTG+GKTA+F+ PML
Sbjct: 67  ISFAHFGFDESLLNCIIKHGYTEPTGIQRQAVPVALSGHDLIGIAQTGSGKTAAFLWPML 126

Query: 61  TIL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFE 113
             L      E+G      P  L+L PTRELA Q+    +K+ K Y  + V +L GG+   
Sbjct: 127 VHLMDQPELERGDG----PIGLVLAPTRELAHQIYLEAKKFSKAYQGVRVTVLYGGVSKN 182

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q K+L  G ++L+ TPGR++D        +  +  LV+DEAD+ML++GF P +++I   
Sbjct: 183 DQFKELRAGVEILVATPGRLIDLIKMKATNLTRVTYLVLDEADQMLNLGFEPQVRSICDH 242

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +   RQTLLFSAT    ++ +    L NP RI +     +   I    V       K   
Sbjct: 243 IRPDRQTLLFSATFRKRIEHLVRALLNNPTRISIGNVGQSNSDITQIPVVLENDGVKFGW 302

Query: 234 LLQQL--LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS--VCAIHGNIDQRSRMKILS 289
           L   L  L +Q  +   ++F ++K  V  L  +L     +  V A+HG++ Q  R ++L 
Sbjct: 303 LTAHLPRLVAQGPV---LVFVSRKAGVDELASNLSAAQIASVVGALHGDLMQAQRDQVLK 359

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G  +++V++D+A+RGLDI  V  V N+DV    ++Y+HRIGRTGRAG  G A+TL+
Sbjct: 360 EFKSGKSRVLVSTDVASRGLDIKGVKTVINYDVSKDIDSYVHRIGRTGRAGEKGTAYTLI 419

Query: 350 AKEDIKHIDAIEKLIE 365
             ++ +    + +L+E
Sbjct: 420 TMQEDRFASDLVQLME 435


>gi|188533798|ref|YP_001907595.1| ATP-dependent RNA helicase DbpA [Erwinia tasmaniensis Et1/99]
 gi|188028840|emb|CAO96702.1| ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99]
          Length = 459

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 132/352 (37%), Positives = 202/352 (57%), Gaps = 8/352 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY+  TP+Q  ++P +L+  DV   A+TG+GKTA+F    L ++ +  A   + + L+L 
Sbjct: 22  GYLAMTPVQAASLPAILEGRDVRAQAKTGSGKTAAF---GLGVMHRVDASQYVTQALVLC 78

Query: 80  PTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QV     +  +   N+ +  L GG P  AQ   L     +++ TPGRILDH  
Sbjct: 79  PTRELADQVTKELRRLARFTANIKILTLCGGQPVGAQRDSLLHAPHIVVGTPGRILDHLK 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           R  L ++ I  LV+DEADRML+MGF   I  I S  P  RQTLLFSAT    +  +S+  
Sbjct: 139 RETLKLDAITTLVLDEADRMLEMGFREDIDMIISHSPQQRQTLLFSATWPQAIAHISQKI 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            ++P  +E    S     IE  F    A+  K  AL+  L + Q    + ++FCN K+  
Sbjct: 199 QRDPLTVETGDVSDL-PAIEQTFYEAGAR-EKLTALIGLLSERQPA--SCVVFCNTKREC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            ++ ++LE    S   +HG+++QR R ++L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 DDIAYALENAQISAQPLHGDLEQRDRDQMLIRFANGSCRVLVATDVAARGLDIKALSMVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           N+ +    E ++HRIGRT RAG+ G A +LVA +++    A+E  +++K+ W
Sbjct: 315 NYQLSFDPEVHVHRIGRTARAGQEGCAVSLVAPDEMIRAHALEDYLQQKLAW 366


>gi|261333672|emb|CBH16667.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 616

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 138/392 (35%), Positives = 221/392 (56%), Gaps = 17/392 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F+++ + P ++  V   GY KPTP+Q   IP  L   D+   AQTG+GKTAS+++P  
Sbjct: 115 LSFSEMNMVPVLLENVKRCGYTKPTPVQSLGIPTALNHRDLMACAQTGSGKTASYLIPAI 174

Query: 59  ---MLTILEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
              +L I  +          P+ LIL PTREL+ Q+     K+  +  +   ++ GG   
Sbjct: 175 NEILLNISNRPPYSPGSHSSPQALILAPTRELSLQIYGEARKFTYHTPVRCVVVYGGADP 234

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT- 171
             Q  +L RG  +L+ TPGR++D F+RG +  + I  L++DEADRMLDMGF P I+ I  
Sbjct: 235 RHQVHELSRGCKLLVATPGRLMDMFSRGYVRFSEIRFLILDEADRMLDMGFEPQIRMIVQ 294

Query: 172 ---SLVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
              S +P    RQTLL+SAT   E+Q+++  F+     ++V    ST E I    V    
Sbjct: 295 GPDSDMPRAGQRQTLLYSATFPVEIQRLAREFMCRHSFLQVGRVGSTTENITQD-VRWIE 353

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              K+ ALL  L +++  +   ++F  +K++   L   L     +  +IHG+  QR R +
Sbjct: 354 DPDKRQALLTLLRENEGKLV--LVFVEKKRDADYLERFLRNSELACVSIHGDRVQREREE 411

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  FK G  Q++VA+D+A+RGLDIP+VG V  +D+P+  ++Y+HRIGRTGRAG+ G A 
Sbjct: 412 ALRLFKSGACQVLVATDVASRGLDIPNVGVVIQYDMPSNIDDYVHRIGRTGRAGKVGVAI 471

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           +   +++   +D +  L+ +    ++ ++ +L
Sbjct: 472 SFFNEKNRNIVDDLIPLLNETNQVISPEVRAL 503


>gi|171693513|ref|XP_001911681.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946705|emb|CAP73508.1| unnamed protein product [Podospora anserina S mat+]
          Length = 694

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 134/346 (38%), Positives = 195/346 (56%), Gaps = 22/346 (6%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML---------------TIL 63
           A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L                  
Sbjct: 212 ARYKIPTPVQKYSIPIVIGGRDLMACAQTGSGKTGGFLFPILHQSFVQGPSPIPAQGGGG 271

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
              R R   P  LIL PTREL +Q+ D   K+     +   ++ GG    +Q +++ERG 
Sbjct: 272 GGYRQRKAYPTALILAPTRELVSQIYDESRKFAYRSWVRPCVVYGGADIGSQLRQIERGC 331

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--VPFT--RQ 179
           D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P I+ I     +P T  RQ
Sbjct: 332 DLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVQGEDMPLTGQRQ 391

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT   ++Q ++++FL +   + V    ST+E I       Y +   K ++L  +L
Sbjct: 392 TLMFSATFPRDIQMLAQDFLNDYVFLSVGRVGSTSENITQ--KVEYVEDVDKRSVLLDIL 449

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       +IF   K+   +L   L  Q F   +IHG+  QR R + L  F+ G   ++
Sbjct: 450 HTHAGGLT-LIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALELFRNGKCPIL 508

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G A
Sbjct: 509 VATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIA 554


>gi|225463591|ref|XP_002271334.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
          Length = 587

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 140/404 (34%), Positives = 223/404 (55%), Gaps = 30/404 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     ++  +   G V+PTPIQ++ +P++L   D+ GIA TG+GKT  FVLP++ 
Sbjct: 143 NFKDMRFPEPILKNLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPLIM 202

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
           +  +    + +     P  L++ P+RELA Q  +  E++           L   L IGG+
Sbjct: 203 VALQEEVSMPIVPGEGPFGLVICPSRELARQTYEVVEQFLVPMRECGYPELRPLLCIGGV 262

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + +++G  +++ TPGR+ D   + KL ++N   L +DEADR++D+GF   I+ +
Sbjct: 263 DMRSQLEVVKKGVHIIVATPGRLKDMLAKKKLNLDNCRYLTLDEADRLVDLGFEDDIREV 322

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q  + + L  P  + VN   + A  ++   V    +Y K
Sbjct: 323 FDHFKAQRQTLLFSATMPTKIQNFARSALVKP--VTVNVGRAGAANLD---VIQEVEYVK 377

Query: 231 KCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A +  LL+  Q T    +IFC  K +V ++   L  +G    AIHG  DQ  R   +S
Sbjct: 378 QEAKIVYLLECLQKTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAIS 437

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T +
Sbjct: 438 SFKAGKKDVLVATDVASKGLDFPDIKHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 497

Query: 350 AKE-------DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
            K        D+KH      L+++    +   L+ LN P+E +D
Sbjct: 498 NKNQSETTLLDLKH------LLQEAKQRIPPVLAELNDPMEDVD 535


>gi|315633657|ref|ZP_07888947.1| ATP-dependent RNA helicase RhlB [Aggregatibacter segnis ATCC 33393]
 gi|315477699|gb|EFU68441.1| ATP-dependent RNA helicase RhlB [Aggregatibacter segnis ATCC 33393]
          Length = 432

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 137/367 (37%), Positives = 213/367 (58%), Gaps = 9/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FAD  L P V+ A+ D G+   TPIQ  ++P+ L+  DV G AQTGTGKT +F+  +   
Sbjct: 25  FADFPLHPLVLQALNDKGFEFCTPIQALSLPVTLRGKDVAGQAQTGTGKTIAFLTALFHH 84

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +          PR LIL PTRELA Q+  + + + K      AL  GG  ++ Q K +E
Sbjct: 85  LLTHPTETDKNQPRALILAPTRELAVQIEHDAQIFLKTTKFKTALAYGGDGYDKQLKAIE 144

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ- 179
            G DVLI T GR++D+  +G + ++ I+ +V+DEADRM D+GFI  I+ +    P  +Q 
Sbjct: 145 NGVDVLIGTTGRVIDYVKQGIIRLDQIQTVVLDEADRMFDLGFIRDIRYLLRKCPPPQQR 204

Query: 180 -TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237
            T+LFSAT++ ++++++   + +P+ +E+     T + I E  F   Y     K  LL  
Sbjct: 205 LTMLFSATLSYKVRELAFEDMNDPEYVEIEPEQKTGQQIKEELF---YPSNQDKIPLLLT 261

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +   +  IIF N K     +   L   G  V  + G++ Q+ R+ +L  F +G + 
Sbjct: 262 LLEEE-WPERCIIFANTKHQCEAIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLD 320

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL I +V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   ++   ++
Sbjct: 321 ILVATDVAARGLHIAEVTHVFNYDLPDDREDYVHRIGRTGRAGESGISISFACEQYAMNL 380

Query: 358 DAIEKLI 364
            AIE+ I
Sbjct: 381 PAIEEYI 387


>gi|256860906|gb|ACV32355.1| vasa [Nibea mitsukurii]
          Length = 640

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 145/430 (33%), Positives = 231/430 (53%), Gaps = 31/430 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +  AV  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 202 MTFEEATLCESLRKAVAKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 261

Query: 61  T-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G A      ++ P  LI+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 262 QQLMADGVAASSFSELQEPEVLIVAPTRELINQIYMEARKFSYGTCVRPVVVYGGVSTGY 321

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q +++ RG +VL  TPGR+LD   RGK+ ++ +   V+DEADRMLDMGF P ++ +    
Sbjct: 322 QIREISRGCNVLCGTPGRLLDVIGRGKIGLSKLRYFVLDEADRMLDMGFEPDMRRLVGSP 381

Query: 175 PFT----RQTLLFSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +++Q+++ +FL+     + V         +E  FV    ++S
Sbjct: 382 GMPTKEHRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFVQV-TKFS 440

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL  LL++  T +  ++F   K+    +   L ++     +IHG+ +QR R + L+
Sbjct: 441 KREQLLD-LLKTTGTERT-MVFVETKRQADFIATYLCQEKVPTTSIHGDREQREREQALA 498

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G   ++VA+ +AARGLD+PDV +V +FD+PN  + Y+HRIGRTGR G  G+A +  
Sbjct: 499 DFRSGKCPVLVATSVAARGLDVPDVLNVVSFDLPNNIDEYVHRIGRTGRCGNTGRAVSFY 558

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
                   DA  +L    V  L+     +   LE+   +    A           GF+  
Sbjct: 559 ------DPDADGQLARSLVTILSKAQQEVPSWLEEYAFSVPGDA-----------GFNSS 601

Query: 410 KKNYSSQKSH 419
           K+N++S  S 
Sbjct: 602 KRNFASSDSR 611


>gi|114643645|ref|XP_001153882.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
          Length = 398

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 124/330 (37%), Positives = 198/330 (60%), Gaps = 7/330 (2%)

Query: 40  DVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY 99
           D+ G+A+TG+GKT +F LP+L  L +   R+     L+L PTRELA Q+++ FE  G + 
Sbjct: 6   DIIGLAETGSGKTGAFALPILNALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSI 62

Query: 100 NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRM 158
            +  A+++GGI   +Q+  L +   ++I TPGR++DH    K   +  ++ LV+DEADR+
Sbjct: 63  GVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRI 122

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
           L+M F   +  I  ++P  R+T LFSATMT ++QK+    L+NP +  V++   T E ++
Sbjct: 123 LNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQ 182

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
             ++   +++  K   L  +L ++    + +IFC+   N       L   GF+   +HG 
Sbjct: 183 QYYIFIPSKF--KDTYLVYIL-NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQ 239

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
           + Q  R+  L+ FK     +++A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT R
Sbjct: 240 MSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTAR 299

Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           AGR GKA T V + D++    IE LI KK+
Sbjct: 300 AGRSGKAITFVTQYDVELFQRIEHLIGKKL 329


>gi|291239093|ref|XP_002739459.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Saccoglossus
           kowalevskii]
          Length = 851

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 126/356 (35%), Positives = 206/356 (57%), Gaps = 4/356 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V+  +   GY  PTPIQ K +P+++ R DV  +A+TG+GKTA+F++PM   
Sbjct: 80  FQAMGLSMGVLKGIFRKGYKVPTPIQRKCVPIIMDRKDVVAMARTGSGKTAAFLIPMFEK 139

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++  A+    R LIL PTRELA Q      + GK   L  A+++GG   + Q   L   
Sbjct: 140 LQRHSAKT-GARALILSPTRELAVQTLKFTRELGKFLGLRSAVILGGDKMDDQFAALHEN 198

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR+L       L +N++E +V DEADR+ +MGF   ++ I   +P  RQTLL
Sbjct: 199 PDIIIATPGRLLHVLVEMDLKLNSLEYVVFDEADRLFEMGFAEQLEEIIQRLPDDRQTLL 258

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L +P  I ++  S  ++ ++  F +T A    K +LL  LL++ 
Sbjct: 259 FSATLPKLLVEFARAGLNDPMLIRLDVESKLSDQLKLAFFSTRA--DDKISLLLHLLRNV 316

Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  +IF     +V  +   L + G + C I+ ++D  +R   ++ F      +M+ 
Sbjct: 317 IKPSEQTVIFLATMHHVDYIKEILTQAGINCCHIYSSLDPAARKINVAKFTHKKAMVMLV 376

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +D+AARG+DIP + +V NF+ P + + ++HR+GR  RAGR G A++L+A +++ ++
Sbjct: 377 TDVAARGIDIPLLDNVINFNFPAKPKLFVHRVGRVARAGRTGTAYSLIASDELPYL 432


>gi|67624743|ref|XP_668654.1| DEAD box polypeptide, Y chromosome-related [Cryptosporidium hominis
           TU502]
 gi|54659828|gb|EAL38390.1| DEAD box polypeptide, Y chromosome-related [Cryptosporidium
           hominis]
          Length = 702

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 135/346 (39%), Positives = 200/346 (57%), Gaps = 20/346 (5%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-LTILEKGR-----------A 68
           Y +PTP+Q  +IP VL   D+   AQTG+GKTA+F+ P+ + +L  G             
Sbjct: 221 YERPTPVQKFSIPTVLNGRDLMACAQTGSGKTAAFLFPIVMKMLNDGPPPTPQQSSLRIK 280

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
           R+  P  L+L PTRELA Q  +   K+     +   +L GG    +Q   L+RG+D+++ 
Sbjct: 281 RMAYPVALVLSPTRELAIQTYEESRKFCFGTGIRTNVLYGGSEVRSQIMDLDRGSDIIVA 340

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT--SLVPFT---RQTLLF 183
           TPGR+ D  +RGK+ +  I+ L++DEADRMLDMGF P I+ I   S +P +   RQT++F
Sbjct: 341 TPGRLRDLIDRGKVNLKLIKFLILDEADRMLDMGFAPQIREIVEDSEMPHSLDGRQTVMF 400

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT   E+Q+++++FL N   + V    +T+ +I    V  YA+   K  LL +LL  Q 
Sbjct: 401 SATFPREIQQLAKDFLHNYIFLTVGRVGATSGSIVQRVV--YAEEDHKPRLLVKLLLEQG 458

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
                ++F   K+    +   L  Q F   +IHG+  Q+ R   L  F+ G   ++VA+D
Sbjct: 459 EGLT-VVFVEMKRRADQIEDFLIDQNFPAVSIHGDRSQQEREHALRLFRSGQRPILVATD 517

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +AARGLDIP++ HV N D+P   ++Y+HRIGRTGRAG  G A + V
Sbjct: 518 VAARGLDIPNITHVINLDMPCNIDDYVHRIGRTGRAGNTGLATSFV 563


>gi|66357412|ref|XP_625884.1| Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+HELICc)
           [Cryptosporidium parvum Iowa II]
 gi|46226846|gb|EAK87812.1| Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+HELICc)
           [Cryptosporidium parvum Iowa II]
 gi|323510023|dbj|BAJ77905.1| cgd4_3000 [Cryptosporidium parvum]
          Length = 702

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 135/346 (39%), Positives = 200/346 (57%), Gaps = 20/346 (5%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-LTILEKGR-----------A 68
           Y +PTP+Q  +IP VL   D+   AQTG+GKTA+F+ P+ + +L  G             
Sbjct: 221 YERPTPVQKFSIPTVLNGRDLMACAQTGSGKTAAFLFPIVMKMLNDGPPPTPQQSSLRIK 280

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
           R+  P  L+L PTRELA Q  +   K+     +   +L GG    +Q   L+RG+D+++ 
Sbjct: 281 RMAYPVALVLSPTRELAIQTYEESRKFCFGTGIRTNVLYGGSEVRSQIMDLDRGSDIIVA 340

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT--SLVPFT---RQTLLF 183
           TPGR+ D  +RGK+ +  I+ L++DEADRMLDMGF P I+ I   S +P +   RQT++F
Sbjct: 341 TPGRLRDLIDRGKVNLKLIKFLILDEADRMLDMGFAPQIREIVEDSEMPHSLDGRQTVMF 400

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT   E+Q+++++FL N   + V    +T+ +I    V  YA+   K  LL +LL  Q 
Sbjct: 401 SATFPREIQQLAKDFLHNYIFLTVGRVGATSGSIVQRVV--YAEEDHKPRLLVKLLLEQG 458

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
                ++F   K+    +   L  Q F   +IHG+  Q+ R   L  F+ G   ++VA+D
Sbjct: 459 EGLT-VVFVEMKRRADQIEDFLIDQNFPAVSIHGDRSQQEREHALRLFRSGQRPILVATD 517

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +AARGLDIP++ HV N D+P   ++Y+HRIGRTGRAG  G A + V
Sbjct: 518 VAARGLDIPNITHVINLDMPCNIDDYVHRIGRTGRAGNTGLATSFV 563


>gi|255070425|ref|XP_002507294.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
 gi|226522569|gb|ACO68552.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
          Length = 484

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 154/401 (38%), Positives = 210/401 (52%), Gaps = 19/401 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL+  +   +   G    TP+Q   IP +L   DV G+AQTGTGKTA+F LP+L I
Sbjct: 70  FRSLGLNSWLCENITSMGIATATPVQRGCIPAILAGRDVIGVAQTGTGKTAAFALPILQI 129

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  GR    +   L L PTRELA+Q+++ F  +     L    + GG     Q K L   
Sbjct: 130 L--GREPYGI-FCLCLTPTRELASQISEQFIAFSAGMTLRCETVFGGENIRTQAKALMLR 186

Query: 123 ADVLICTPGRILDHFNRGKLL---MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-R 178
             + + TPGR++DHF     +     N+  LV+DEADR+LD GF   +Q I   +P   R
Sbjct: 187 PHIAVATPGRLMDHFLHCSAVAKCFENVRCLVLDEADRLLDPGFEAELQAIMHNLPSANR 246

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+T  +  V E  L      E    +  A     E+CF+A       K   L 
Sbjct: 247 QTLMFSATITKSISAVQELALGKALLFEALKDTQLAGRCKEEYCFIAPRV----KEVYLV 302

Query: 237 QLLQSQDTM--KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            +L+   T   ++ I+F    +    L   L   G +  A+H    Q  R   LS FK G
Sbjct: 303 HILKRAPTWGTRSMIVFAGTVRKCQMLKEILSVLGINCVALHAAKKQARRHASLSRFKSG 362

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            IQ+M+A+D+A+RGLDIP V  V N+DVP    +YIHRIGRT RAGR G+A TLV + DI
Sbjct: 363 EIQIMIATDIASRGLDIPTVDMVVNYDVPLIPRDYIHRIGRTARAGRVGRAITLVTQHDI 422

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
             +  IE+L  +K+     +LS L+      D+AQ   AR+
Sbjct: 423 SLVHQIEQLTCRKLV----ELSKLSEEAILKDMAQVFAARR 459


>gi|91087239|ref|XP_975511.1| PREDICTED: similar to eIF4AIII CG7483-PA [Tribolium castaneum]
 gi|270010579|gb|EFA07027.1| hypothetical protein TcasGA2_TC009998 [Tribolium castaneum]
          Length = 404

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 208/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L  +++  V   G+ KP+ IQ + I  +++  DV   AQ+GTGKTA+F + +L  
Sbjct: 33  FKNMHLKEELLRGVFAYGFEKPSAIQQRAIKPIIKGRDVIAQAQSGTGKTATFSIAILQS 92

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    + R  + L L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 93  LD---LQTRETQVLCLSPTRELAVQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYG 149

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   ++++LV+DEAD ML+ GF   I ++   +P + Q +L
Sbjct: 150 QHVVSGTPGRVYDMIRRRALRTRSVKMLVLDEADEMLNKGFKEQIYDVYRFLPPSTQVVL 209

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 210 ISATLPHEILEITSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 268

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 269 ----TITQAVIFCNTKRKVDWLTEKMRENNFTVSSMHGDMPQKERDNIMKEFRSGQSRVL 324

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 325 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRD 384

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 385 IEQYYSTQIDEMPMNVADL 403


>gi|301609527|ref|XP_002934380.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Xenopus (Silurana)
           tropicalis]
          Length = 847

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 131/355 (36%), Positives = 199/355 (56%), Gaps = 2/355 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   V+  GY  PTPIQ K IP++L   DV  +A+TG+GKTA F++PM   
Sbjct: 75  FQSMGLSYPVFKGVMKKGYKVPTPIQRKVIPVILDGKDVVAMARTGSGKTACFLIPMFEK 134

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+  + R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 135 LKAHSAQTGV-RGLILSPTRELALQTLKFTKELGKFTGLKTALILGGDKMEDQFAALHEN 193

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L +  +E +V DEADR+ +MGF   +Q I S +P TRQTLL
Sbjct: 194 PDIIIATPGRLMHVAIEMNLKLRTVEYVVFDEADRLFEMGFAEQLQEIISRLPETRQTLL 253

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +  ++ ++  F     +  K   LL  L    
Sbjct: 254 FSATLPKMLLEFARAGLTEPVLIRLDVDTKLSDQLKLSFFNVRVE-DKPAVLLHLLRCVV 312

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  +IF   K +   L   L+ QG     I+  +DQ +R   L  F  G ++ ++ +
Sbjct: 313 KPQEQTVIFVATKHHAEYLRELLDMQGIPCSHIYSALDQTARKINLGLFLHGKVRALLVT 372

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           D+AARG+DIP + +V N++ P +A+ ++HR+GR  RAGR G A++L+A ++I ++
Sbjct: 373 DVAARGIDIPMLDNVINYNFPPKAKLFLHRVGRVARAGRSGTAYSLIAPDEIPYV 427


>gi|297484847|ref|XP_002694562.1| PREDICTED: DEAD box RNA helicase DP97-like [Bos taurus]
 gi|296478588|gb|DAA20703.1| DEAD box RNA helicase DP97-like [Bos taurus]
          Length = 876

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 132/357 (36%), Positives = 199/357 (55%), Gaps = 6/357 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F++PM   
Sbjct: 98  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSGKTACFLIPMFER 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 158 LKTHSAQT-GARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHEN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I   +P   QT+L
Sbjct: 217 PDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVL 276

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLLQ 240
           FSAT+   L + +   L  P  I ++  S   E ++  F  V   A+ +    LL+ +++
Sbjct: 277 FSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFFLVREDAKAAVLLHLLRNVVR 336

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     ++F   K +   L   L  QG S   I+  +DQ +R   L+ F  G    ++
Sbjct: 337 PQDQT---VVFVATKHHAEYLSELLATQGVSCAHIYSALDQTARKINLARFTHGKCSALI 393

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA +++ ++
Sbjct: 394 VTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYL 450


>gi|115840564|ref|XP_785431.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 48
           [Strongylocentrotus purpuratus]
          Length = 360

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 131/364 (35%), Positives = 202/364 (55%), Gaps = 11/364 (3%)

Query: 18  DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLI 77
           + G+ KP+ IQ + I  V++  DV   AQ+GTGKTA+F + +L  L+    +VR  + LI
Sbjct: 4   ELGFEKPSAIQQRAIKPVVKGRDVIAQAQSGTGKTATFSISILQCLD---TQVRETQALI 60

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           L PTRELA Q+       G   ++     IGG       +KL+ G  V+  TPGR+ D  
Sbjct: 61  LSPTRELANQIQKVILALGDYMSVQCHSCIGGTNVGEDIRKLDFGQHVVSGTPGRVFDMI 120

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
            R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +LFSAT+  E+ +++  
Sbjct: 121 RRRNLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLFSATLPHEILEMTSK 180

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           F+ +P RI V     T E I+  FVA   +   +   C L   L     T+   +IFCN 
Sbjct: 181 FMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL-----TITQAVIFCNT 235

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  ++++ +D+ ARGLD+  V
Sbjct: 236 KRKVDWLTEKMREANFTVSSMHGDMPQKEREAIMKEFRSGASRVLITTDVWARGLDVQQV 295

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
             V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE+    ++D +  +
Sbjct: 296 SLVINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMPMN 355

Query: 375 LSSL 378
           ++ L
Sbjct: 356 VADL 359


>gi|221307593|ref|NP_001138306.1| probable ATP-dependent RNA helicase DDX5 [Pan troglodytes]
 gi|156630859|sp|A5A6J2|DDX5_PANTR RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5
 gi|146741418|dbj|BAF62365.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Pan troglodytes verus]
          Length = 614

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 204/374 (54%), Gaps = 14/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 154 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 209

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG +  I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 210 QIRDLERGVENCIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 270 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 329

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 330 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 388

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 389 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448

Query: 353 DIKHI-DAIEKLIE 365
           +IK + D I  L E
Sbjct: 449 NIKQVSDLISVLRE 462


>gi|315282345|ref|ZP_07870774.1| probable ATP-dependent RNA helicase YqfR [Listeria marthii FSL
           S4-120]
 gi|313614006|gb|EFR87721.1| probable ATP-dependent RNA helicase YqfR [Listeria marthii FSL
           S4-120]
          Length = 435

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 134/381 (35%), Positives = 214/381 (56%), Gaps = 12/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G  P +  A+   G+ +PT +Q K IP +L+   + G +QTGTGKT +F+LP++  
Sbjct: 7   FDQFGFQPFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINN 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
           +   +  V+    +I  P+RELA Q+ +   K  K     + V L+IGG   +    KL+
Sbjct: 67  VNPEKDAVQ---AVITAPSRELATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++  + LVIDEAD  LDMGF+  + +I   +P   Q 
Sbjct: 124 KQPQIIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQM 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL- 239
           L+FSAT+  +L+     +++NP+   +    + ++T+EH  +AT ++   K  LL+ +L 
Sbjct: 184 LVFSATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSR--NKIDLLKNVLV 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            SQ  +   I+F N K     + + L ++G  V  IHG+++ R R + +   +    Q +
Sbjct: 242 GSQPYL--AIVFTNTKTTADEVANGLVERGLKVAKIHGDVNPRERKRTMKQIENLDYQYV 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+DI  + HV N+++P+  + YIHR GRTGRAG  G A TL    D   ++ 
Sbjct: 300 VATDLAARGIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQ 359

Query: 360 IEKL-IE-KKVDWLNGDLSSL 378
           +EK+ IE K VDW N +  +L
Sbjct: 360 LEKMGIEFKHVDWKNKEFVTL 380


>gi|89269500|emb|CAJ82782.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Xenopus (Silurana)
           tropicalis]
          Length = 437

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 131/355 (36%), Positives = 199/355 (56%), Gaps = 2/355 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   V+  GY  PTPIQ K IP++L   DV  +A+TG+GKTA F++PM   
Sbjct: 75  FQSMGLSYPVFKGVMKKGYKVPTPIQRKVIPVILDGKDVVAMARTGSGKTACFLIPMFEK 134

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+  + R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 135 LKAHSAQTGV-RGLILSPTRELALQTLKFTKELGKFTGLKTALILGGDKMEDQFAALHEN 193

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L +  +E +V DEADR+ +MGF   +Q I S +P TRQTLL
Sbjct: 194 PDIIIATPGRLMHVAIEMNLKLRTVEYVVFDEADRLFEMGFAEQLQEIISRLPETRQTLL 253

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +  ++ ++  F     +  K   LL  L    
Sbjct: 254 FSATLPKMLLEFARAGLTEPVLIRLDVDTKLSDQLKLSFFNVRVE-DKPAVLLHLLRCVV 312

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  +IF   K +   L   L+ QG     I+  +DQ +R   L  F  G ++ ++ +
Sbjct: 313 KPQEQTVIFVATKHHAEYLRELLDMQGIPCSHIYSALDQTARKINLGLFLHGKVRALLVT 372

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           D+AARG+DIP + +V N++ P +A+ ++HR+GR  RAGR G A++L+A ++I ++
Sbjct: 373 DVAARGIDIPMLDNVINYNFPPKAKLFLHRVGRVARAGRSGTAYSLIAPDEIPYV 427


>gi|296237741|ref|XP_002763877.1| PREDICTED: ATP-dependent RNA helicase DDX3Y-like [Callithrix
           jacchus]
          Length = 647

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 136/393 (34%), Positives = 218/393 (55%), Gaps = 25/393 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D+ +   ++  +    Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+
Sbjct: 168 NFSDIDMGEIILGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILS 227

Query: 62  -------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +   GR   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 228 QIYTDGPGEALKAVKGNGRCGRRKQYPVSLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 287

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEAD+MLDMGF P 
Sbjct: 288 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIALDFCKYLVLDEADKMLDMGFEPQ 347

Query: 167 IQNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    +
Sbjct: 348 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVI 407

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             + +   K + L  +L +       ++F   KK   +L   L  +G +  +IHG+  QR
Sbjct: 408 --WVEDLDKRSFLLDILGATGRDSLTLVFVETKKGADSLEDFLYHEGHACTSIHGDRSQR 465

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 466 DREEALRQFRSGRSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNL 525

Query: 343 GKAFTLVAKEDIK-HIDAIEKLIEKKVD---WL 371
           G A +   ++++    D ++ L+E K +   WL
Sbjct: 526 GLATSFFNEKNVNIAKDLLDLLVEAKQEVPSWL 558


>gi|242080665|ref|XP_002445101.1| hypothetical protein SORBIDRAFT_07g004090 [Sorghum bicolor]
 gi|241941451|gb|EES14596.1| hypothetical protein SORBIDRAFT_07g004090 [Sorghum bicolor]
          Length = 1062

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 132/377 (35%), Positives = 210/377 (55%), Gaps = 7/377 (1%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           GL+ K++  +   G+ KP PIQ + +P+++   D  GIA+TG+GKT +FVLPML  ++  
Sbjct: 443 GLTSKLLDTIKKLGFEKPMPIQTQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQ 502

Query: 67  RARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
              V    P  LI+ PTREL  Q+  + +K+ K   +    + GG     Q  +L+RGA+
Sbjct: 503 PPVVPGDGPIGLIMAPTRELVVQIHSDIKKFSKVLGINCVAIYGGSGVAQQISELKRGAE 562

Query: 125 VLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           +++CTPGR++D    + GK+  +  +  LV+DEADRM DMGF P I  I       RQT+
Sbjct: 563 IVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNTRPDRQTV 622

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   +++ ++   L  P  I+V   S   + I    V       +   LL+ LL  
Sbjct: 623 LFSATFPRQVEILARKVLTKPVEIQVGGRSVVNKDITQ-LVEVRPDTERFFRLLE-LLGE 680

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F + +    +L   L + G+   ++HG  DQ  R   +++FK     L++A
Sbjct: 681 WYVKGKILVFVHSQDKCDSLLKDLFQHGYPCLSLHGGKDQTDRESTIADFKSNVCSLLIA 740

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           + +AARGLD+ ++  V N+DVPN  E+Y+HR+GRTGRAGR G A T +++E+ ++   + 
Sbjct: 741 TSVAARGLDVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKGFAVTFISEEEERYAPDLV 800

Query: 362 KLIEKKVDWLNGDLSSL 378
           K +E     +  DL +L
Sbjct: 801 KALELSEQAVPQDLKAL 817


>gi|70995215|ref|XP_752371.1| DEAD/DEAH box RNA helicase [Aspergillus fumigatus Af293]
 gi|74672743|sp|Q4WT99|PRP5_ASPFU RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|66850006|gb|EAL90333.1| DEAD/DEAH box RNA helicase [Aspergillus fumigatus Af293]
          Length = 1211

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 208/375 (55%), Gaps = 10/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M ++  GL  + +  +   GY  PT IQ + IP ++   DV G+A+TG+GKT +F++PM 
Sbjct: 575 MKWSQCGLGVQTLDVIQKLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMF 634

Query: 61  TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +   R    M  P  LI+ PTRELA Q+  + + + K  NL      GG P + Q  +
Sbjct: 635 RHIRDQRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAE 694

Query: 119 LERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I + + 
Sbjct: 695 LKRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIR 754

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT+LFSAT    ++ ++   L  P  I V   S  A  I    V    + +K   LL
Sbjct: 755 PDRQTVLFSATFPRNMEALARKSLTKPIEIVVGGKSVVAPEITQ-IVEVRNEDTKFVRLL 813

Query: 236 QQL--LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
           + L  L S D  ++   +IF ++++    L   L ++G+   +IHG  DQ  R   + +F
Sbjct: 814 EILGNLYSDDANEDARALIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDF 873

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + +
Sbjct: 874 KAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTE 933

Query: 352 EDIKHIDAIEKLIEK 366
           E  ++   I K + +
Sbjct: 934 EQERYSVDIAKALRQ 948


>gi|312219551|emb|CBX99494.1| similar to ATP-dependent RNA helicase DRS1 [Leptosphaeria maculans]
          Length = 811

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 133/361 (36%), Positives = 201/361 (55%), Gaps = 15/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  ++  +   G+ +PTPIQ K IP+ +Q  DV G A+TG+GKTA+F++P+L  
Sbjct: 282 FQAMSLSRPILRGLAAVGFSEPTPIQNKAIPIAMQGKDVVGGAETGSGKTAAFLIPILER 341

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  I  PTRELA Q  +   K     ++T AL+ GG   + Q   L+  
Sbjct: 342 LLYRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSTKDQEAVLKTR 401

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     + ++EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 402 PDVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFESQLNEILTTIPKSRQTM 461

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-TYAQYSKKCALLQQLLQ 240
           LFSATMT  + ++    +  P R+ V+    T + +   F+     +  ++ A L  + +
Sbjct: 462 LFSATMTSTVDRLIRIGMDKPVRLMVDAKKHTVKGLTQEFIRLRQGKEDRRLAYLMYICE 521

Query: 241 SQDTMKNGIIFCNQKKN------VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            +   +  IIF  QKK       V  LC      G     +HGN+ Q  R++ +  F+ G
Sbjct: 522 -KFYNERVIIFFRQKKEAHRVRVVFALC------GLKASELHGNMSQEQRIQAVEAFRSG 574

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
               ++A+D+A+RGLDI +V  V N++ P   + Y+HR+GRT RAGR G+A TL A+ D 
Sbjct: 575 KSAYLLATDVASRGLDIKNVSTVINYEAPQTHDIYMHRVGRTARAGREGRACTLAAEPDR 634

Query: 355 K 355
           K
Sbjct: 635 K 635


>gi|229522511|ref|ZP_04411927.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|229340496|gb|EEO05502.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
          Length = 416

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 204/374 (54%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A L     +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 11  MSFSSLALSADLIQA-LPKEITQPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 69

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV+D     G    L    L GG+    Q   L 
Sbjct: 70  ERLKTSPEQ----QALVLVPTRELAMQVSDVLTHVGTPLGLNTLCLCGGVDKAEQQNALA 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 126 ENPNILVATTGRLFDLTQSG-LSLNRVTTLVLDEADRLLDMGFWPQVQALASQTASVRQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 185 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK GT Q+++
Sbjct: 244 HQ--WPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGTTQVLI 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 302 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAI 361

Query: 361 EKLIEKKVDWLNGD 374
             L ++++   N D
Sbjct: 362 RTLTQRQLPVQNLD 375


>gi|46907678|ref|YP_014067.1| ATP-dependent RNA helicase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47092740|ref|ZP_00230526.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes str.
           4b H7858]
 gi|254824491|ref|ZP_05229492.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254932635|ref|ZP_05265994.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|254993205|ref|ZP_05275395.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes FSL
           J2-064]
 gi|255522510|ref|ZP_05389747.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes FSL
           J1-175]
 gi|300765593|ref|ZP_07075572.1| ATP-dependent RNA helicase [Listeria monocytogenes FSL N1-017]
 gi|46880946|gb|AAT04244.1| putative ATP-dependent RNA helicase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47018928|gb|EAL09675.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes str.
           4b H7858]
 gi|293584194|gb|EFF96226.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293593729|gb|EFG01490.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|300513694|gb|EFK40762.1| ATP-dependent RNA helicase [Listeria monocytogenes FSL N1-017]
 gi|328465494|gb|EGF36723.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes 1816]
 gi|328474965|gb|EGF45759.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes 220]
 gi|332311891|gb|EGJ24986.1| ATP-dependent RNA helicase [Listeria monocytogenes str. Scott A]
          Length = 435

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 134/381 (35%), Positives = 214/381 (56%), Gaps = 12/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G  P +  A+   G+ +PT +Q K IP +L+   + G +QTGTGKT +F+LP++  
Sbjct: 7   FDQFGFQPFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINN 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
           +   +  V+    +I  P+RELA Q+ +   K  K     + V L+IGG   +    KL+
Sbjct: 67  VNPEKEAVQ---AVITAPSRELATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++  + LVIDEAD  LDMGF+  + +I   +P   Q 
Sbjct: 124 KQPQIIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQM 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL- 239
           L+FSAT+  +L+     +++NP+   +    + ++T+EH  +AT ++   K  LL+ +L 
Sbjct: 184 LVFSATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSR--NKLDLLKNVLV 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            SQ  +   I+F N K     + + L ++G  V  IHG+++ R R + +   +    Q +
Sbjct: 242 GSQPYL--AIVFTNTKTTADEVANGLIERGLKVAKIHGDVNPRERKRTMKQIENLDYQYV 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+DI  + HV N+++P+  + YIHR GRTGRAG  G A TL    D   ++ 
Sbjct: 300 VATDLAARGIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQ 359

Query: 360 IEKL-IE-KKVDWLNGDLSSL 378
           +EK+ IE K VDW N +  +L
Sbjct: 360 LEKMGIEFKHVDWKNKEFVTL 380


>gi|229526460|ref|ZP_04415864.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
 gi|229336618|gb|EEO01636.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
          Length = 437

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 204/368 (55%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  V+ A L     +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 23  MSFSSLALSADVIQA-LPKAITEPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++     G    L    L GG+    Q   L 
Sbjct: 82  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTHVGTPLGLNTLCLCGGVDKTEQQNALA 137

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+LD    G L ++ +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 138 ENPNILVATTGRLLDLTQSG-LSLSRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++        + SK  AL+  L  
Sbjct: 197 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALL-- 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+     ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK GT Q+++
Sbjct: 254 KQNPWPQVLVFIGAKENADSLTKKLNKAGVVATALHGDKSQAQREAALAEFKNGTTQVLI 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G AF+LV   ++  ++AI
Sbjct: 314 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIAFSLVCHGEMDALNAI 373

Query: 361 EKLIEKKV 368
             L ++++
Sbjct: 374 RTLTQREL 381


>gi|114643641|ref|XP_520752.2| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 4 [Pan
           troglodytes]
          Length = 406

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 201/368 (54%), Gaps = 58/368 (15%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 26  FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++  ++   +++  K         
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKSK--------- 252

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                                                      R+  L+ FK     +++
Sbjct: 253 -------------------------------------------RLGSLNKFKAKARSILL 269

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 270 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 329

Query: 361 EKLIEKKV 368
           E LI KK+
Sbjct: 330 EHLIGKKL 337


>gi|328772390|gb|EGF82428.1| hypothetical protein BATDEDRAFT_29496 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 508

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 131/351 (37%), Positives = 198/351 (56%), Gaps = 20/351 (5%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML---------TILEKGRARVR 71
           +  P+ IQ  T P +L   D+ GIA TG+GKT +F +P L           L+KG+    
Sbjct: 104 FPAPSFIQSVTWPPILNGRDLVGIAATGSGKTLAFGVPALLHIQNCLALNTLQKGK---- 159

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
            P TL+L PTRELA Q+ D F ++G+   +    + GG+P   Q K L++G  V++ TPG
Sbjct: 160 -PLTLVLSPTRELAMQIQDQFVQFGQAIGVKSVCIYGGMPKWEQKKLLQQGMHVIVATPG 218

Query: 132 RILDHFNRGKLL--MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT---RQTLLFSAT 186
           R++D F        ++ ++ LV+DEADRMLD+GF   I+ I   +P     RQT++FSAT
Sbjct: 219 RLIDLFEEDDRTCDLSQVKYLVLDEADRMLDIGFEEAIRKIIKKLPTAAQGRQTVMFSAT 278

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
               +Q+++ ++L NP ++ V +   +A       V     ++K+  LLQ L     +  
Sbjct: 279 WPQSIQRMAMSYLNNPVKVTVGSTDLSANISIEQRVEVLDPFAKETRLLQLLRDYHKSRT 338

Query: 247 NGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
           N I IF   KK    L   L++ G++V +IHG++ Q  R   +  F+ G I L++A+D+A
Sbjct: 339 NRILIFALYKKEASRLDQFLKRNGYNVASIHGDLSQVQRTAAIDGFRSGKIPLLIATDVA 398

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ARG+DIP+V +V N   P   E+Y HRIGRTGRAG+ G + T+    D  H
Sbjct: 399 ARGIDIPNVEYVINVTFPLTVEDYCHRIGRTGRAGKTGISHTMFTLHDKSH 449


>gi|159131126|gb|EDP56239.1| DEAD/DEAH box RNA helicase [Aspergillus fumigatus A1163]
          Length = 1211

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 208/375 (55%), Gaps = 10/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M ++  GL  + +  +   GY  PT IQ + IP ++   DV G+A+TG+GKT +F++PM 
Sbjct: 575 MKWSQCGLGVQTLDVIQKLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMF 634

Query: 61  TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +   R    M  P  LI+ PTRELA Q+  + + + K  NL      GG P + Q  +
Sbjct: 635 RHIRDQRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAE 694

Query: 119 LERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I + + 
Sbjct: 695 LKRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIR 754

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT+LFSAT    ++ ++   L  P  I V   S  A  I    V    + +K   LL
Sbjct: 755 PDRQTVLFSATFPRNMEALARKSLTKPIEIVVGGKSVVAPEITQ-IVEVRNEDTKFVRLL 813

Query: 236 QQL--LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
           + L  L S D  ++   +IF ++++    L   L ++G+   +IHG  DQ  R   + +F
Sbjct: 814 EILGNLYSDDANEDARALIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDF 873

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + +
Sbjct: 874 KAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTE 933

Query: 352 EDIKHIDAIEKLIEK 366
           E  ++   I K + +
Sbjct: 934 EQERYSVDIAKALRQ 948


>gi|261345453|ref|ZP_05973097.1| ATP-dependent RNA helicase SrmB [Providencia rustigianii DSM 4541]
 gi|282566500|gb|EFB72035.1| ATP-dependent RNA helicase SrmB [Providencia rustigianii DSM 4541]
          Length = 408

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 127/331 (38%), Positives = 189/331 (57%), Gaps = 4/331 (1%)

Query: 40  DVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
           DV G A TGTGKTA+F+LP +  +L+  R +   PR LI+ PTRELA QVAD  +++  +
Sbjct: 5   DVLGSAPTGTGKTAAFLLPAIQHLLDFPRKKSGPPRVLIVTPTRELAMQVADQAKEFCAH 64

Query: 99  YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
            +L VA + GG+ +    +      D+++ T GR+L +          +EIL++DEADRM
Sbjct: 65  NHLDVATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVEILILDEADRM 124

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETI 217
           LDMGF   I+ I +   + +QT+LFSAT+  D ++  +E  L++P  I  +      + I
Sbjct: 125 LDMGFAHDIETIAAETRWRKQTMLFSATLEGDAIRDFAERLLEDPVEISADPSRRERKKI 184

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
           +  F         K ALL  LL+ +D  K+ I+F  +++ V  +   L   G   C I G
Sbjct: 185 QQ-FYYRADNLEHKTALLCHLLKQKDVTKS-IVFVRKRERVREVVQWLRTAGIEPCYIEG 242

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
            + Q  R + +     G + ++VA+D+A+RGLDI +V HVFNFD+P  A+ Y+HRIGRTG
Sbjct: 243 EMVQAKRNEAVRRMVTGQVNVLVATDVASRGLDIENVSHVFNFDLPRTADVYLHRIGRTG 302

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           RAGR G A +LV   D      I + IE  +
Sbjct: 303 RAGRKGTALSLVEAHDFPLFGKITRYIEDPI 333


>gi|209880596|ref|XP_002141737.1| eukaryotic translation initiation factor 4A [Cryptosporidium muris
           RN66]
 gi|209557343|gb|EEA07388.1| eukaryotic translation initiation factor 4A, putative
           [Cryptosporidium muris RN66]
          Length = 404

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 127/360 (35%), Positives = 199/360 (55%), Gaps = 5/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L   ++  +   G+ KP+ IQ + +  +L  +D  G AQ+GTGKTA+FV+  L  
Sbjct: 33  FEALNLDGNLLRGIFAYGFEKPSAIQQRGVKPILDGYDTIGQAQSGTGKTATFVIAAL-- 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +K    +   + L+L PTRELA Q+       G   +L     +GG        KL+ G
Sbjct: 91  -QKIDYSLNACQVLLLAPTRELAQQIQKVALALGDYCDLRCHACVGGTSVRDDMNKLKNG 149

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ D  ++G L ++++++ ++DEAD ML  GF   I +I   +P   Q  L
Sbjct: 150 VHMVVGTPGRVFDMLDKGYLRVDHLKLFILDEADEMLSRGFKLQIHDIFKKLPQDVQVAL 209

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E+  ++  F+++PKRI V     T E I   +VA      K   L+   L   
Sbjct: 210 FSATMPNEILHLTTQFMRDPKRILVKQEELTLEGIRQYYVAVEKDEWKLATLVD--LYET 267

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   II+CN +  V  L   +  + F+   +HG++DQ+ R  I+  F+ G+ ++++ +
Sbjct: 268 LTIVQAIIYCNTRIRVDRLTKQMTDRDFTCSCMHGDMDQKDREVIMRQFRSGSSRVLITT 327

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P  AE YIHRIGR+GR GR G A   V  +DI+H+  IE+
Sbjct: 328 DLLARGIDVQQVSLVINYDLPVSAETYIHRIGRSGRFGRKGVAVNFVTVDDIEHLRDIER 387


>gi|15241415|ref|NP_199941.1| DEAD-box protein abstrakt, putative [Arabidopsis thaliana]
 gi|75335491|sp|Q9LU46|RH35_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 35
 gi|8843865|dbj|BAA97391.1| DEAD-box protein abstrakt [Arabidopsis thaliana]
 gi|110740861|dbj|BAE98527.1| DEAD-box protein abstrakt [Arabidopsis thaliana]
 gi|332008678|gb|AED96061.1| DEAD-box ATP-dependent RNA helicase 35 [Arabidopsis thaliana]
          Length = 591

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 143/404 (35%), Positives = 223/404 (55%), Gaps = 30/404 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     V+  + + G V+PTPIQ++ +P++L   D+ GIA TG+GKT  FVLPM+ 
Sbjct: 147 NFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIM 206

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
           I  +    + +     P  LI+ P+RELA Q  +  E++           L   L IGGI
Sbjct: 207 IALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGI 266

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + ++RG  +++ TPGR+ D   + K+ ++    L +DEADR++D+GF   I+ +
Sbjct: 267 DMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREV 326

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q  + + L  P  + VN   + A  ++   V    +Y K
Sbjct: 327 FDHFKSQRQTLLFSATMPTKIQIFARSALVKP--VTVNVGRAGAANLD---VIQEVEYVK 381

Query: 231 KCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A +  LL+  Q T    +IFC  K +V ++   L  +G    AIHG  DQ  R   +S
Sbjct: 382 QEAKIVYLLECLQKTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAIS 441

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T +
Sbjct: 442 SFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 501

Query: 350 AKE-------DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
            K        D+KH      L+++    +   L+ LN P+E+ +
Sbjct: 502 NKNQSETTLLDLKH------LLQEAKQRIPPVLAELNDPMEEAE 539


>gi|116206328|ref|XP_001228973.1| hypothetical protein CHGG_02457 [Chaetomium globosum CBS 148.51]
 gi|121789113|sp|Q2HBE7|DED1_CHAGB RecName: Full=ATP-dependent RNA helicase DED1
 gi|88183054|gb|EAQ90522.1| hypothetical protein CHGG_02457 [Chaetomium globosum CBS 148.51]
          Length = 688

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 206/364 (56%), Gaps = 24/364 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P++
Sbjct: 198 LTFSNPPLDAHLLSNIELARYQIPTPVQKYSIPIVINGRDLMACAQTGSGKTGGFLFPIM 257

Query: 61  -TILEKG------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                +G            R R   P  LIL PTREL +Q+ +   K+     +   ++ 
Sbjct: 258 HQSFTQGPSPIPAQSGGGYRQRKAYPTALILAPTRELVSQIYEEARKFAYRSWVRPCVVY 317

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P I
Sbjct: 318 GGADIGSQLRQMERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQI 377

Query: 168 QNITSL--VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I     +P T  RQTL+FSAT   ++Q ++++FL +   + V    ST+E I      
Sbjct: 378 RRIVQGEDMPTTGQRQTLMFSATFPRDIQMLAQDFLNDYVFLSVGRVGSTSENITQ--KV 435

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
            Y +   K ++L  +L    T   G  +IF   K+   +L   L  Q F   +IHG+  Q
Sbjct: 436 EYVEDVDKRSVLLDILH---THAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQ 492

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG 
Sbjct: 493 RERERALELFRNGKCPILVATAVAARGLDIPNVTHVINYDLPTDVDDYVHRIGRTGRAGN 552

Query: 342 HGKA 345
            G A
Sbjct: 553 TGIA 556


>gi|301122021|ref|XP_002908737.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262099499|gb|EEY57551.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 518

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 145/416 (34%), Positives = 222/416 (53%), Gaps = 50/416 (12%)

Query: 1   MDFADLGLSPKVV--CAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           + F +LG+ P +V  C +L  G   PTP+Q   IP +L   DV G AQTG+GKTA+F LP
Sbjct: 52  ISFLNLGVDPWLVKRCELL--GIRHPTPVQAHCIPPILAGRDVIGCAQTGSGKTAAFALP 109

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L  L K       P  L+L PTRELA Q+AD F  +G +  +  A+++GG+    Q+  
Sbjct: 110 ILHTLSKDPYG---PYALVLTPTRELAFQIADQFNAFGSSMAVRCAVIVGGVDMLKQSLT 166

Query: 119 LERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L++   +++ TPGR  DH  R     ++ ++ +V+DEADR+LD+ F   +  I   +P  
Sbjct: 167 LQQRPHIIVATPGRFRDHLLRADPPNISLVKYVVLDEADRLLDVSFAKDLSFIFDKLPTK 226

Query: 178 RQTLLFSATMTDELQKVSENFLQNPK-RIEVNTPSSTAETIEHCFV-------ATYAQY- 228
           RQTLLFSATMT  L ++ +  L +   R +      T  T++  ++        TY  Y 
Sbjct: 227 RQTLLFSATMTANLDRLEQTALSDDAFRFDATPSVKTVATLKQFYLFIPAQVKMTYLMYL 286

Query: 229 -----------------------SKKCALLQQLLQ----SQDTMKNGIIF---CNQKKNV 258
                                   KK   L++LL+    S+  +++ +IF   C   + V
Sbjct: 287 MKMLDPNEEEEEESNRKVTKSRKGKKDQELEKLLEAATSSKRQLRSMMIFVATCKMCELV 346

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             + + L   G     +H  + Q  R+  L  FK G   +++++D+A+RGLDIP+V  V 
Sbjct: 347 GEIGNEL---GTKCVTLHSMLSQNRRLAALGKFKSGLSHILISTDVASRGLDIPEVDVVL 403

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
           NFD+P  A++YIHR+GRT RAGR G+A +LV + DI+ +  IE  + KK+D    D
Sbjct: 404 NFDLPRDADDYIHRVGRTARAGRSGQAISLVTQHDIELLQNIEDKVGKKMDDYETD 459


>gi|170091070|ref|XP_001876757.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648250|gb|EDR12493.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 661

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 128/383 (33%), Positives = 212/383 (55%), Gaps = 8/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL    +  +    Y  PT IQ + IP ++   DV G+A+TG+GKT +F+LP+   
Sbjct: 82  WSHFGLPANCLDVIKRLNYTAPTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLLPLFRH 141

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++  R+  +M  P  +++ PTRELA Q+    + + K  NL      GG P + Q  +L+
Sbjct: 142 IKDQRSLEQMEGPIAVVMTPTRELAVQIHKECKAFLKVLNLRAVCAYGGSPIKDQIAELK 201

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +GA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I + +   
Sbjct: 202 KGAEIIVCTPGRMIDLLTANSGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIINNIRPD 261

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT   ++  ++   L  P  I V   S  A  IE   V    + +K   LL+ 
Sbjct: 262 RQTVLFSATFPKQMDSLARKILHKPLEITVGGRSVVAAEIEQ-IVEVRPEDTKFNRLLEI 320

Query: 238 LLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L Q  ++D     ++F ++++   NL   L ++G+   ++HG  DQ  R   +++FK G 
Sbjct: 321 LGQMYNEDPECRTLVFVDRQEAADNLLRELMRKGYLCMSLHGGKDQVDRDSTIADFKSGV 380

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G   T +  E  +
Sbjct: 381 VPIVIATSVAARGLDVKQLKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCVTFITPEQER 440

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
           +   I + ++     +  DL  L
Sbjct: 441 YSVDIYRAVKASNATIPKDLEEL 463


>gi|195579332|ref|XP_002079516.1| GD23992 [Drosophila simulans]
 gi|194191525|gb|EDX05101.1| GD23992 [Drosophila simulans]
          Length = 547

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 130/375 (34%), Positives = 211/375 (56%), Gaps = 26/375 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    L   +V  V  +GY  PTPIQ + IP++    D+   AQTG+GKTASF+LP+++
Sbjct: 132 NFTSADLRGIIVENVKKSGYKVPTPIQKRAIPVITAGRDLMACAQTGSGKTASFLLPIIS 191

Query: 62  IL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            L       E GR     P+ +I+ PTRELA Q+ D   K+     L + ++ GG  F  
Sbjct: 192 KLLDDPQDLEFGR-----PQAVIVSPTRELAIQIFDEARKFAYETYLKIGIVYGGTSFRH 246

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           QN  + +G+ VLI T GR+LD  +R  +   +   +V+DEADRMLDMGF   ++ + + V
Sbjct: 247 QNDCITKGSHVLIATLGRLLDFVDRTFVTFEDTRFVVLDEADRMLDMGFSEGMRKLMTHV 306

Query: 175 PF--TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                 QTL+FSAT  +++Q+++  FL N   + +         ++   +   ++++K+ 
Sbjct: 307 TMRPQHQTLMFSATFPEDIQRLAGEFLNNYVFVAIGMVGGACSDVKQT-IYEVSKFNKRA 365

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L++ L +  D     I+F   K+    L   L +  F   +IHG+  Q  R + L +FK
Sbjct: 366 KLMEILREEADGT---IVFVETKRGADFLASYLSETEFPTTSIHGDRLQSQREQALRDFK 422

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT----- 347
            G++++++A+ +A+RGLDI ++ HV N+D+P   ++Y+HRIGRTGR G +G+A T     
Sbjct: 423 NGSMKVLIATSVASRGLDIKNIKHVINYDMPKNIDDYVHRIGRTGRVGNNGRATTFFDPD 482

Query: 348 ---LVAKEDIKHIDA 359
              L+A + IK +D 
Sbjct: 483 QDRLIAADLIKILDG 497


>gi|145496370|ref|XP_001434176.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124401299|emb|CAK66779.1| unnamed protein product [Paramecium tetraurelia]
          Length = 472

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 140/383 (36%), Positives = 216/383 (56%), Gaps = 9/383 (2%)

Query: 1   MDFADLGLSPKVVCA-VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           + F D+   PK +   ++ AG+  PTPIQ ++  + L  HD+ GIAQTG+GKT +F+LP 
Sbjct: 69  LRFEDVYCFPKPLQELIVQAGFPGPTPIQAQSWSIGLTGHDLIGIAQTGSGKTLAFLLPA 128

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  +     +   P+ LI+ PTREL  Q+ + F K+     L  A L GG     Q  +L
Sbjct: 129 IIHILAQLKQNADPQCLIMAPTRELTHQIYEQFTKFSVGSGLKAACLFGGQEKFIQKNQL 188

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   +LI  PGR++D    G   +  +  LV+DEADRMLDMGF P I+ I +     RQ
Sbjct: 189 NQHPHILIACPGRLIDLVESGSTTLKGVTFLVLDEADRMLDMGFEPSIRKIVAQTRAERQ 248

Query: 180 TLLFSATMTDELQKVSENFL-QNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKCALLQ 236
           T+LFSAT   E+Q ++ +F  Q P  I++ +   +S  +  +   + +  Q   K   L+
Sbjct: 249 TMLFSATWPKEVQSLALDFCTQQPIHIQIGSLDLTSNRQIQQKVVILSKEQKEDK---LK 305

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L+S  T K  IIFC  K     L   L + G    ++HG+  Q  R  ++++FK+G  
Sbjct: 306 EILKSLGTRKI-IIFCQTKIKCDQLQLYLIQDGLRCKSLHGDKRQSERDFVMNSFKKGDT 364

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIK 355
            ++VA+D+A+RGLDI D+  V NFD+P   E+Y+HRIGRTGRAG  G + +L  + ED K
Sbjct: 365 TVLVATDVASRGLDIKDIEFVINFDMPKMIEDYVHRIGRTGRAGAQGVSISLFDSYEDAK 424

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
               +  ++ +  + + G+LS L
Sbjct: 425 LAGDLVGVLRESQNEVPGELSRL 447


>gi|41327776|ref|NP_957518.1| probable ATP-dependent RNA helicase DDX47 isoform 2 [Homo sapiens]
 gi|119616689|gb|EAW96283.1| hCG27698, isoform CRA_c [Homo sapiens]
          Length = 406

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 201/368 (54%), Gaps = 58/368 (15%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 26  FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++  ++   +++  K         
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKSK--------- 252

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                                                      R+  L+ FK     +++
Sbjct: 253 -------------------------------------------RLGSLNKFKAKARSILL 269

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 270 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 329

Query: 361 EKLIEKKV 368
           E LI KK+
Sbjct: 330 EHLIGKKL 337


>gi|194857377|ref|XP_001968940.1| GG25145 [Drosophila erecta]
 gi|190660807|gb|EDV57999.1| GG25145 [Drosophila erecta]
          Length = 512

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 122/335 (36%), Positives = 198/335 (59%), Gaps = 10/335 (2%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--EKGRARVRMP 73
           V  +GY  PTPIQ  +IP+++   D+   AQTG+GKTA+F++P+L+ L  +     +  P
Sbjct: 108 VTKSGYKVPTPIQKVSIPVIVAGRDLMACAQTGSGKTAAFLVPILSKLLDDPQDLEIGKP 167

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           + +I+ PTRELA Q+     K+     L + ++ GG  F+ QN+ + +G  VLI TPGR+
Sbjct: 168 QAVIVSPTRELAIQIFSEARKFAFESYLKINIVYGGTSFKHQNECITKGCHVLIATPGRL 227

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR---QTLLFSATMTDE 190
           LD  +R  +   +   +V+DEADRMLDMGF   ++   +  P  R   QTL+FSAT  +E
Sbjct: 228 LDFVDRAFITFEDTRFVVLDEADRMLDMGFSESMRKFMTH-PTMRPEHQTLMFSATFPEE 286

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGII 250
           +Q+++  FL N   + +         ++   +    +++K+  L++ L +  D     I+
Sbjct: 287 IQRLAGEFLNNYVFVTIGVVGGACSDVQQT-IYEVNKFAKRSKLMEILREQAD---GTIV 342

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F   K+    L   L +  F   +IHG+  Q  R + L +FK G++++++A+ +AARGLD
Sbjct: 343 FVETKRGADFLASFLSETEFPTTSIHGDRLQSQREQALRDFKNGSMKVIIATSVAARGLD 402

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           I ++ HV NFD+PN  ++Y+HRIGRTGR G +G+A
Sbjct: 403 IKNINHVVNFDMPNNIDDYVHRIGRTGRVGNNGRA 437


>gi|15219185|ref|NP_173078.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|75336890|sp|Q9SA27|RH36_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 36
 gi|4966350|gb|AAD34681.1|AC006341_9 Similar to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
           melanogaster and is a member of PF|00270 DEAD/DEAH box
           helicase family [Arabidopsis thaliana]
 gi|332191310|gb|AEE29431.1| DEAD-box ATP-dependent RNA helicase 36 [Arabidopsis thaliana]
          Length = 491

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 146/425 (34%), Positives = 231/425 (54%), Gaps = 32/425 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LGL+   V    + G  KPTP+Q   +P +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 59  NFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILH 118

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    V     L++ PTRELA Q+A+ F+  G   NL  ++++GG+    Q   L  
Sbjct: 119 RLAEDPYGVF---ALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVS 175

Query: 122 GADVLICTPGRILDHFNRGKLLMNN----------IEILVIDEADRMLDMGFIPYIQNIT 171
              ++I TPGRI       K+L+ N           + LV+DEADR+LD+GF   ++ I 
Sbjct: 176 RPHIVITTPGRI-------KVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIF 228

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
             +P +RQTLLFSATMT  LQ + E+        E      T +T+   F+    + +K+
Sbjct: 229 QCLPKSRQTLLFSATMTSNLQALLEHSSNKAYFYEAYEGLKTVDTLTQQFIFE-DKDAKE 287

Query: 232 CALLQQLLQSQDT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             L+  L Q +D  +++ +IF +  +    L   L++      A+H    Q  R+  LS 
Sbjct: 288 LYLVHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSK 347

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G + +++A+D+A+RGLDIP V  V N+D+P    +Y+HR+GRT RAGR G A +++ 
Sbjct: 348 FKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIIT 407

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF---- 406
           + D+K I  IE+ + KK++  N  + +     + +++ + + A++   +     GF    
Sbjct: 408 ETDVKLIHKIEEEVGKKMEPYNKKVIT-----DSLEVTKVSKAKRVAMMKMLDNGFEDKV 462

Query: 407 -DRRK 410
            DRRK
Sbjct: 463 KDRRK 467


>gi|260790063|ref|XP_002590063.1| hypothetical protein BRAFLDRAFT_123431 [Branchiostoma floridae]
 gi|229275251|gb|EEN46074.1| hypothetical protein BRAFLDRAFT_123431 [Branchiostoma floridae]
          Length = 403

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 208/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   AQ+G GKTA+F + +L  
Sbjct: 32  FDSMGLREDLLRGIYAYGFEKPSAIQQRAIKPIVKGRDVIAQAQSGVGKTATFSISILQC 91

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    ++R  + L+L PTRELA Q+       G   ++     IGG       +KL+ G
Sbjct: 92  LD---IQMREVQALVLSPTRELATQIQKVILALGDYMSVQCHSCIGGTNVGEDIRKLDYG 148

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 149 QHVVSGTPGRVFDMIRRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 208

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 209 LSATLPHEILEMTTKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 267

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 268 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGASRVL 323

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 324 ITTDVWARGIDVPQVSLIINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRD 383

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 384 IEQYYSTQIDEMPMNVADL 402


>gi|16800556|ref|NP_470824.1| hypothetical protein lin1488 [Listeria innocua Clip11262]
 gi|16413961|emb|CAC96719.1| lin1488 [Listeria innocua Clip11262]
          Length = 435

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 134/381 (35%), Positives = 214/381 (56%), Gaps = 12/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G  P +  A+   G+ +PT +Q K IP +L+   + G +QTGTGKT +F+LP++  
Sbjct: 7   FDQFGFQPFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINN 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
           +   +  V+    +I  P+RELA Q+ +   K  K     + V L+IGG   +    KL+
Sbjct: 67  VNPEKDAVQ---AVITAPSRELATQIYNEIRKVTKFSEKEIAVQLVIGGTDKQRAIDKLK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++  + LVIDEAD  LDMGF+  + +I   +P   Q 
Sbjct: 124 KQPQIIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQM 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL- 239
           L+FSAT+  +L+     +++NP+   +    + ++T+EH  +AT ++   K  LL+ +L 
Sbjct: 184 LVFSATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSR--NKLDLLKNVLV 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            SQ  +   I+F N K     + + L ++G  V  IHG+++ R R + +   +    Q +
Sbjct: 242 GSQPYL--AIVFTNTKTTADEVANGLIERGLKVAKIHGDVNPRERKRTMKQIENLDYQYV 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+DI  + HV N+++P+  + YIHR GRTGRAG  G A TL    D   ++ 
Sbjct: 300 VATDLAARGIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPSDEDRLNQ 359

Query: 360 IEKL-IE-KKVDWLNGDLSSL 378
           +EK+ IE K VDW N +  +L
Sbjct: 360 LEKMGIEFKHVDWKNKEFVTL 380


>gi|71749190|ref|XP_827934.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70833318|gb|EAN78822.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
          Length = 660

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 138/392 (35%), Positives = 221/392 (56%), Gaps = 17/392 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F+++ + P ++  V   GY KPTP+Q   IP  L   D+   AQTG+GKTAS+++P  
Sbjct: 157 LSFSEMNMVPVLLENVKRCGYTKPTPVQSLGIPTALNHRDLMACAQTGSGKTASYLIPAI 216

Query: 59  ---MLTILEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
              +L I  +          P+ LIL PTREL+ Q+     K+  +  +   ++ GG   
Sbjct: 217 NEILLNISNRPPYSPGSHSSPQALILAPTRELSLQIYGEARKFTYHTPVRCVVVYGGADP 276

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT- 171
             Q  +L RG  +L+ TPGR++D F+RG +  + I  L++DEADRMLDMGF P I+ I  
Sbjct: 277 RHQVHELSRGCKLLVATPGRLMDMFSRGYVRFSEIRFLILDEADRMLDMGFEPQIRMIVQ 336

Query: 172 ---SLVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
              S +P    RQTLL+SAT   E+Q+++  F+     ++V    ST E I    V    
Sbjct: 337 GPDSDMPRAGQRQTLLYSATFPVEIQRLAREFMCRHSFLQVGRVGSTTENITQD-VRWIE 395

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              K+ ALL  L +++  +   ++F  +K++   L   L     +  +IHG+  QR R +
Sbjct: 396 DPDKRQALLTLLRENEGKLV--LVFVEKKRDADYLERFLRNSELACVSIHGDRVQREREE 453

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  FK G  Q++VA+D+A+RGLDIP+VG V  +D+P+  ++Y+HRIGRTGRAG+ G A 
Sbjct: 454 ALRLFKSGACQVLVATDVASRGLDIPNVGVVIQYDMPSNIDDYVHRIGRTGRAGKVGVAI 513

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           +   +++   +D +  L+ +    ++ ++ +L
Sbjct: 514 SFFNEKNRNIVDDLIPLLNETNQVISPEVRAL 545


>gi|288940348|ref|YP_003442588.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288895720|gb|ADC61556.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
           180]
          Length = 683

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 140/436 (32%), Positives = 224/436 (51%), Gaps = 68/436 (15%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P+++  + +AG+ + TPIQ +T+P+ LQ HD+ G AQTGTGKTA+F++ ++  
Sbjct: 11  FDSLALDPRILAGLAEAGFTQCTPIQAETLPIALQGHDIAGQAQTGTGKTAAFLVALMQR 70

Query: 63  L-----EKGRARVRMPRT----------------------------------------LI 77
           L     E        P T                                        L+
Sbjct: 71  LLHEPPEAMPESAAAPETPVSADGSPETESLDPANALEAESEPESAPAPARRRRGPRALV 130

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           L PTRELA Q+  +     K+  L   ++ GG  ++ Q  +L  G D+LI TPGR++D++
Sbjct: 131 LAPTRELAVQIHKDTLALAKHTGLRSTVVYGGTGYQQQRDELAAGVDILIGTPGRLIDYY 190

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL--LFSATMTDELQKVS 195
            +    +  IE++V+DEADRM D+GFI  I+ +   +P   Q L  LFSAT++  + +++
Sbjct: 191 KQHVFDLKRIEVVVLDEADRMFDLGFIKDIRYLFRQMPPVEQRLGMLFSATLSYRVTELA 250

Query: 196 ENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQSQDTMKNG--IIFC 252
              + +P+ +++ T   TA+ +   C++       +K  LL  L++      +G  I+F 
Sbjct: 251 YEHMNHPRLVKIETEQVTADRVRQVCYMTAN---EEKIPLLLGLIRG---WPDGRIIVFV 304

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
           N K+    +   L+  G     + G++ Q  R+K+L +F  GT+ ++V +D+AARGL IP
Sbjct: 305 NTKREADRVWGYLQGNGIDTAVLSGDVPQPKRLKLLRDFTNGTLPVLVGTDVAARGLHIP 364

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
           DV HV N+D+P   E+Y+HRIGRT RAG  G A + V +     +  IE+ I  KV    
Sbjct: 365 DVTHVVNYDLPEDPEDYVHRIGRTARAGAAGDAVSFVCETYAFCLLDIEQYIGIKV---- 420

Query: 373 GDLSSLNPPLEKIDIA 388
                   P+E +D A
Sbjct: 421 --------PVEPVDPA 428


>gi|170719699|ref|YP_001747387.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida W619]
 gi|169757702|gb|ACA71018.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 461

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 136/370 (36%), Positives = 217/370 (58%), Gaps = 10/370 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA L LS  ++ A LDA GY   TPIQ +++P++L+  D+   A+TG+GKTA+F + +L 
Sbjct: 8   FATLPLSAAML-ANLDALGYASMTPIQAQSLPVILRGQDLIAQAKTGSGKTAAFGIGLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            +     R    + L+L PTRELA QVA    +  +   N+ +  L GG+    Q   LE
Sbjct: 67  PINP---RYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLE 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRI  H ++G L+++ +  LV+DEADRMLDMGF   I +I    P  RQT
Sbjct: 124 HGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++++ +F++ P++++V +   T   IE  F+    Q  ++   + ++L 
Sbjct: 184 LLFSATYPAGIEQLAADFMRKPQQVKVES-LHTDNQIEQRFIEIDPQ--QRLEAVTRVL- 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ + FC  K+   ++   L  +G    A+HG+++QR R ++L+ F   +  ++V
Sbjct: 240 GHYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N ++   AE ++HR+GRTGRAG  G A +LVA  +     AI
Sbjct: 300 ATDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGIAVSLVAPAEGHRAQAI 359

Query: 361 EKLIEKKVDW 370
           E L +  + W
Sbjct: 360 EALQKSPLRW 369


>gi|67969935|dbj|BAE01315.1| unnamed protein product [Macaca fascicularis]
          Length = 509

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 198/354 (55%), Gaps = 14/354 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRARVRMPR 74
           + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +        LE+G      P 
Sbjct: 9   FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDG----PI 64

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTRELA QV     +Y +   L    + GG P   Q + LERG ++ I TPGR++
Sbjct: 65  CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLI 124

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL++SAT   E++++
Sbjct: 125 DFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQL 184

Query: 195 SENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           +E+FL++   I +     S+    ++   V    +  +K   L + + S+   K  I+F 
Sbjct: 185 AEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKT-IVFV 243

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             K+    L   + + G+    IHG+  Q+ R  +L+ FK G   +++A+D+A+RGLD+ 
Sbjct: 244 ETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVE 303

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI-DAIEKLIE 365
           DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK + D I  L E
Sbjct: 304 DVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLRE 357


>gi|26327389|dbj|BAC27438.1| unnamed protein product [Mus musculus]
          Length = 874

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 134/359 (37%), Positives = 199/359 (55%), Gaps = 10/359 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 97  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 156

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K R+     R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 157 L-KARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHEN 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I   +P   QT+L
Sbjct: 216 PDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVL 275

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA----LLQQL 238
           FSAT+   L + ++  L  P  I ++  S   E ++  F+    +   K A    LLQ +
Sbjct: 276 FSATLPKLLVEFAQAGLTEPVLIRLDVDSKLNEQLKTSFL--LVREDTKAAVLLYLLQNV 333

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ QD     ++F   K +   L   L  QG S   I+  +DQ +R   L+ F       
Sbjct: 334 VRPQDQT---VVFVATKHHAEYLTELLMGQGVSCAHIYSALDQTARKINLAKFTHNKCST 390

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ +DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA +++ ++
Sbjct: 391 LIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYL 449


>gi|322701026|gb|EFY92777.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Metarhizium
           acridum CQMa 102]
          Length = 712

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 125/396 (31%), Positives = 210/396 (53%), Gaps = 35/396 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + GL  +++  V   GY +PTPIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L  
Sbjct: 273 WEESGLPQRLLDIVDRVGYKEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVY 332

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +        +     P  LIL PTREL  Q+    +K+ +        ++GG   E Q  
Sbjct: 333 ISDLPPLTEVNKNDGPYALILAPTRELVQQIETEAKKFAEPLGFRCVSIVGGHSLEEQAF 392

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GA++++ TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +P +
Sbjct: 393 ALRNGAEIIVATPGRLVDCIERRLLVLSQCCYIIMDEADRMIDLGFEESVNKILDALPVS 452

Query: 178 -------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS 212
                                    RQT++++ATM   ++++++ +L+ P    +     
Sbjct: 453 NEKPDTDDAENAQLMKSYLGSRDKYRQTMMYTATMPPLVERIAKKYLRRPATATIGNAGE 512

Query: 213 TAETIEHC--FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
             +T+E    FV+   +  K+   LQ++L   +     I+F N K+N   +   ++  G+
Sbjct: 513 AVDTVEQRVEFVSGEDRRKKR---LQEILSKNEFAPPIIVFVNIKRNCDAVARDIKSMGW 569

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G  Q++VA+DLA RG+D+PDV  V NF++    E+Y 
Sbjct: 570 STVTLHGSKTQEQREAALASVRSGATQVLVATDLAGRGIDVPDVSLVVNFNMATSIESYT 629

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           HRIGRTGRAG+ G A T +  ED   +  + +++ K
Sbjct: 630 HRIGRTGRAGKSGVAITFLGNEDADVMYDLRQMLSK 665


>gi|195125432|ref|XP_002007182.1| GI12524 [Drosophila mojavensis]
 gi|193918791|gb|EDW17658.1| GI12524 [Drosophila mojavensis]
          Length = 602

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 207/374 (55%), Gaps = 20/374 (5%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRARVRMPR 74
           Y++PTPIQ +  P+VL  +++ GIA+TG+GKT +F+LP +        L++G      P 
Sbjct: 129 YIEPTPIQAQAWPIVLSGNNLVGIAKTGSGKTLAFILPAIVHINGQPTLKRGDG----PI 184

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L++ PTRELA Q+      +G +  +    + GG P   Q   L+ G +++I TPGR+L
Sbjct: 185 ALVVAPTRELAQQIQTVANDFGSSSYVRNTCIFGGAPRSKQASDLQNGVEIVIATPGRLL 244

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D    G   +     LV+DEADRMLDMGF P I+ I S +   RQ L++SAT   E++++
Sbjct: 245 DFLQSGTTNLRRCTYLVLDEADRMLDMGFEPQIRKILSQIRPDRQILMWSATWPKEVRQL 304

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL--LQQLLQSQDTMKNG-IIF 251
           +E+FL N  +I + +   +A      +V   A++ K   L  L   +  Q  M    IIF
Sbjct: 305 AEDFLGNYIQINIGSLELSANHNIRQYVDVCAEHEKGSKLKDLLSHIYDQSGMPGKIIIF 364

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
              KK V  L   +   G  V +IHG+  Q  R  +L++F+ G   ++VA+D+AARGLD+
Sbjct: 365 VATKKKVDELARFINAFGVGVGSIHGDKSQMDRDNVLNDFRSGRANILVATDVAARGLDV 424

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
             + +V NFD P  +E+YIHRIGRTGR    G ++    +++ K   A+ +++ +     
Sbjct: 425 DGIKYVINFDFPQSSEDYIHRIGRTGRKHSTGTSYAFFTRKNAKCARALIEILREAN--- 481

Query: 372 NGDLSSLNPPLEKI 385
                ++NP LE I
Sbjct: 482 ----QNINPELEHI 491


>gi|224009464|ref|XP_002293690.1| eukaryotic translation initiation factor 4A [Thalassiosira
           pseudonana CCMP1335]
 gi|220970362|gb|EED88699.1| eukaryotic translation initiation factor 4A [Thalassiosira
           pseudonana CCMP1335]
          Length = 369

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 126/352 (35%), Positives = 200/352 (56%), Gaps = 11/352 (3%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ KP+ IQ + I   +   D+   AQ+GTGKTA+F +  L  L+    ++R  ++LIL 
Sbjct: 15  GFEKPSAIQQRAIKPTMLGRDLIAQAQSGTGKTATFAIGTLAKLD---PKLRECQSLILA 71

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA Q+       G    L V   +GG       + L+ G  V++ TPGR+ D  NR
Sbjct: 72  PTRELAQQIQKVVIALGDYMELQVHACVGGTAVRDDIRTLQGGVHVVVGTPGRVYDMINR 131

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
             L +++I    +DEAD ML  GF   I +I   +P + Q  LFSATM  ++ +V++ F+
Sbjct: 132 RALRLDSIRQFFLDEADEMLSRGFKDQIYDIFKFLPESVQVCLFSATMPLDVLEVTQRFM 191

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLLQSQDTMKNGIIFCNQKK 256
           ++P RI V     T E I+  ++A   +  K    C L + L     T+   II+CN ++
Sbjct: 192 RDPVRILVKKDELTLEGIKQFYIAVEREEWKLDTLCDLYETL-----TITQAIIYCNTRR 246

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
            V  L   ++++ F+V  +HG++DQR R  I+  F+ G+ ++++ +DL ARG+D+  V  
Sbjct: 247 KVDWLQEQMQERDFTVSCMHGDMDQRERDIIMREFRSGSSRVLITTDLLARGIDVQQVSL 306

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           V NFD+P   ENYIHRIGR+GR GR G A   + + D++++  IE+  + ++
Sbjct: 307 VINFDLPTNRENYIHRIGRSGRFGRKGVAINFLTEGDVRYLRDIEQFYQTEI 358


>gi|153801803|ref|ZP_01956389.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae MZO-3]
 gi|124122637|gb|EAY41380.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae MZO-3]
          Length = 428

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A L     +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 23  MSFSSLALSADLIQA-LPKAITEPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++   + G    L    L GG+    Q   L 
Sbjct: 82  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKAEQQNALA 137

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 138 ENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQALASQTASVRQT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 197 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK GT Q+++
Sbjct: 256 HQ--WPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQTQREAALAEFKNGTTQVLI 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 314 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAI 373

Query: 361 EKLIEKKVDWLNGD 374
             L ++++   N D
Sbjct: 374 RTLTQRQLPVQNLD 387


>gi|57899404|dbj|BAD88051.1| putative ATP-dependent RNA helicase DB10 [Oryza sativa Japonica
           Group]
 gi|215694706|dbj|BAG89897.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 583

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 119/309 (38%), Positives = 186/309 (60%), Gaps = 7/309 (2%)

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
           P  L+L PTRELA Q+ +   K+G++  ++   L GG P   Q + L+RG DV++ TPGR
Sbjct: 14  PTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRDLDRGVDVVVATPGR 73

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           + D     ++ +  +  LV+DEADRMLDMGF P I+ I   +P  RQTL+++AT   E++
Sbjct: 74  LNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRRQTLMYTATWPKEVR 133

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY---SKKCALLQQLLQSQDTMKNGI 249
           +++E+ L +P ++ +    S  E + +  +    +    S+K   L+Q+L+SQD+    +
Sbjct: 134 RIAEDLLVHPVQVTIG---SVDELVANSAITQNVELITPSEKLRRLEQILRSQDSGSKVL 190

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           IFC  K+    L  +L +Q F   AIHG+  Q  R K+LS+F+ G   ++VA+D+AARGL
Sbjct: 191 IFCTTKRMCDQLARTLTRQ-FGASAIHGDKSQSEREKVLSHFRSGRSPILVATDVAARGL 249

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           DI D+  V N+D P   E+Y+HRIGRTGRAG  G A+T    +D K+   + K++E    
Sbjct: 250 DIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQDSKYAADLIKILEGANQ 309

Query: 370 WLNGDLSSL 378
            +  DL+ +
Sbjct: 310 RVPRDLADM 318


>gi|75318355|sp|O49289|RH29_ARATH RecName: Full=Putative DEAD-box ATP-dependent RNA helicase 29
 gi|2829912|gb|AAC00620.1| Similar ATP-dependent RNA Helicase [Arabidopsis thaliana]
 gi|332197806|gb|AEE35927.1| DEAD-box helicase domain-containing protein [Arabidopsis thaliana]
          Length = 845

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 215/369 (58%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P V  A+   GY  PTPIQ KT+PL+L   DV  +A+TG+GKTA+F++PML  
Sbjct: 30  FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++   +  + R LIL PTR+LA Q     ++ GK  +L V+LL+GG   E Q ++L +G
Sbjct: 90  LKQHVPQGGV-RALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKG 148

Query: 123 ADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR++   +    + +  +E +V DEAD +  MGF   +  I + +   RQTL
Sbjct: 149 PDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTL 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L + ++  L+ P+ + ++  +  +  ++  F+    +  K  ALL  + + 
Sbjct: 209 LFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPE-EKYSALLYLVREH 267

Query: 242 QDTMKNGIIFCNQKKNV--VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             + +  +IF + K +V  VN    LE    SVC  +G++DQ +R   +S F+     L+
Sbjct: 268 ISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVC--YGDMDQDARKIHVSRFRARKTMLL 325

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+AARG+DIP + +V N+D P R + ++HR+GR  RAGR G A++ V  ED+ ++  
Sbjct: 326 IVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYMLD 385

Query: 360 IEKLIEKKV 368
           +   + K V
Sbjct: 386 LHLFLSKPV 394


>gi|328948732|ref|YP_004366069.1| DEAD/DEAH box helicase [Treponema succinifaciens DSM 2489]
 gi|328449056|gb|AEB14772.1| DEAD/DEAH box helicase domain protein [Treponema succinifaciens DSM
           2489]
          Length = 699

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 134/358 (37%), Positives = 203/358 (56%), Gaps = 9/358 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           + FADLGL    + A+   G+  P+PIQ+  IP +L    +V   A+TGTGKTA+F LP+
Sbjct: 35  ISFADLGLDEITLAAIEKKGFKVPSPIQVLAIPRLLNGDANVIAKARTGTGKTAAFGLPL 94

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  L +    VR    +ILEPTRELA Q A     +        A++ GG     Q + L
Sbjct: 95  VQDLREESDHVR---AIILEPTRELAMQTATEMASFTTGKYPRTAVVYGGASMGEQMRAL 151

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG ++++ TPGR+ D  +RG L ++ I+  ++DE D MLDMGFI  I+NI        +
Sbjct: 152 RRGVEIVVGTPGRVQDLIDRGVLDISKIDYFILDEGDEMLDMGFIEDIENIFECANQDCR 211

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT+  E+ K+++ F+   + +E          IE  +     + S+K   L +L+
Sbjct: 212 VLLFSATVPKEILKIAQRFMGEYEIVEEEGFEEEPLLIEQKYWVM--RESEKVDALVRLI 269

Query: 240 Q-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S D    G++F  +K +   +  SL+++G+   A+HG+I Q  R KIL+ F+    ++
Sbjct: 270 DISPDFF--GLVFVQRKSDADYVSKSLDERGYEAAALHGDIPQGQREKILARFRSKKTRI 327

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +VA+D+AARG+DI  V HV N+++P     Y+HRIGRTGRAG  G A T V  E+ + 
Sbjct: 328 LVATDVAARGIDIEGVTHVVNYELPFDGPTYVHRIGRTGRAGAAGMAVTFVKPEETRR 385


>gi|195381768|ref|XP_002049617.1| GJ21693 [Drosophila virilis]
 gi|194144414|gb|EDW60810.1| GJ21693 [Drosophila virilis]
          Length = 784

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 140/395 (35%), Positives = 217/395 (54%), Gaps = 12/395 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP +  
Sbjct: 159 FYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTVER 218

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +      + R L+L PTREL AQV    ++  +  ++ V L IGG+  +AQ   L +
Sbjct: 219 LLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQETVLRQ 278

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I +    TRQT
Sbjct: 279 NPDIVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQT 338

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM+++++ ++   L  P ++ VN     A  +   F+            +   L 
Sbjct: 339 MLFSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLI 398

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F   KK    L   L   G     +HGN+ Q+ R++ L  FKE  I +++
Sbjct: 399 CRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLI 458

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  I
Sbjct: 459 ATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDI 518

Query: 361 EKLIEKKV----------DWLNGDLSSLNPPLEKI 385
            K  E  V          +     L++L P ++ I
Sbjct: 519 IKNAESSVKNRIIPPEIIEKYRNKLTALEPEIQNI 553


>gi|153215589|ref|ZP_01950034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           1587]
 gi|124114677|gb|EAY33497.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           1587]
          Length = 337

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 115/299 (38%), Positives = 183/299 (61%), Gaps = 5/299 (1%)

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           +L PTRELA QV D+ + Y K   L +  + GG   + Q   L  G D+LI TPGR+LDH
Sbjct: 1   MLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPGRLLDH 60

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
            +   L +  +E+LV+DEADRMLDMGF+P +Q +   +   RQTL FSAT   +++ V+ 
Sbjct: 61  AHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSKIKAVAY 120

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
             +++P  ++V   +STAET++           +K  LL  L+ S++  +  ++F   ++
Sbjct: 121 RIMRDPIEVQVTPSNSTAETVQQMVYPV--DKKRKRELLSYLIGSKN-WQQVLVFTKTRQ 177

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
               L   L+  G    +I+G+  Q +R K L +FK G ++ ++A+D+AARGLDI  +  
Sbjct: 178 GSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQLEQ 237

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV--DWLNG 373
           V N+D+P +AE+Y+HRIGRTGRAG  G A +L++ ++   ++AIE+L+  ++  +WL G
Sbjct: 238 VVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIERLLNTRLPQEWLKG 296


>gi|98986202|dbj|BAE94497.1| Vasa [Polyandrocarpa misakiensis]
          Length = 705

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 129/353 (36%), Positives = 200/353 (56%), Gaps = 13/353 (3%)

Query: 10  PKVVCA-VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKG- 66
           P+ +CA V  A Y +PTP+Q  +IP++    D+   AQTG+GKTA+F+LP+L+ +  KG 
Sbjct: 253 PETICANVKKAKYSRPTPVQKYSIPIINADRDLMSCAQTGSGKTAAFLLPVLSGMFRKGL 312

Query: 67  ----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                +  + P+ +++ PTREL  Q+     K+     +   +  GG    +Q + L RG
Sbjct: 313 KSDTLSEKQTPQAIVVGPTRELVLQIFLEARKFAYGSVIRPVVAYGGTSVGSQLRDLCRG 372

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TR 178
            ++LI TPGR+LD  NRGK+    +E L++DEADRMLDMGF P I+ +          +R
Sbjct: 373 CNILIATPGRLLDFINRGKVSCECVEYLILDEADRMLDMGFEPEIRRLLGSPGMPDKNSR 432

Query: 179 QTLLFSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            TL+FSAT  +E+QK++  FL++    + V         +    +    +  K+  L+Q 
Sbjct: 433 HTLMFSATFPNEIQKLAHEFLRDDFLFLSVGRVGGACSDVTQTILQV-DEEDKRETLMQL 491

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L    +T    ++F   K+    L   L ++     +IHG+  QR R   L++FK GT  
Sbjct: 492 LSDVAETRSRTLVFVETKRKADFLAAFLSQENLPTTSIHGDRYQREREMALADFKSGTCP 551

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           +M+A+ +AARGLDIP V HV NFD+PN  + ++HR+GRTGR G  G+A +  +
Sbjct: 552 IMIATSVAARGLDIPKVEHVINFDLPNEIDEFVHRVGRTGRCGNLGQATSFYS 604


>gi|16803490|ref|NP_464975.1| hypothetical protein lmo1450 [Listeria monocytogenes EGD-e]
 gi|47095401|ref|ZP_00233011.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes str.
           1/2a F6854]
 gi|217964403|ref|YP_002350081.1| dead/deah box ATP dependent helicase [Listeria monocytogenes HCC23]
 gi|224499698|ref|ZP_03668047.1| dead/deah box ATP dependent helicase [Listeria monocytogenes
           Finland 1988]
 gi|224501609|ref|ZP_03669916.1| dead/deah box ATP dependent helicase [Listeria monocytogenes FSL
           R2-561]
 gi|226224051|ref|YP_002758158.1| ATP-dependent RNA helicase, DEAD-box family (deaD) [Listeria
           monocytogenes Clip81459]
 gi|254827738|ref|ZP_05232425.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|254829791|ref|ZP_05234446.1| ATP-dependent RNA helicase, DEAD-box family (deaD) [Listeria
           monocytogenes 10403S]
 gi|254898384|ref|ZP_05258308.1| ATP-dependent RNA helicase, DEAD-box family (deaD) [Listeria
           monocytogenes J0161]
 gi|254912124|ref|ZP_05262136.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936452|ref|ZP_05268149.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|284801837|ref|YP_003413702.1| hypothetical protein LM5578_1592 [Listeria monocytogenes 08-5578]
 gi|284994979|ref|YP_003416747.1| hypothetical protein LM5923_1544 [Listeria monocytogenes 08-5923]
 gi|290894213|ref|ZP_06557182.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|16410879|emb|CAC99528.1| lmo1450 [Listeria monocytogenes EGD-e]
 gi|47016222|gb|EAL07145.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes str.
           1/2a F6854]
 gi|217333673|gb|ACK39467.1| dead/deah box ATP dependent helicase [Listeria monocytogenes HCC23]
 gi|225876513|emb|CAS05222.1| Putative ATP-dependent RNA helicase, DEAD-box family (deaD)
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|258600117|gb|EEW13442.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258609044|gb|EEW21652.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|284057399|gb|ADB68340.1| hypothetical protein LM5578_1592 [Listeria monocytogenes 08-5578]
 gi|284060446|gb|ADB71385.1| hypothetical protein LM5923_1544 [Listeria monocytogenes 08-5923]
 gi|290556210|gb|EFD89755.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|293590095|gb|EFF98429.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|307571032|emb|CAR84211.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes L99]
          Length = 435

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 134/381 (35%), Positives = 214/381 (56%), Gaps = 12/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G  P +  A+   G+ +PT +Q K IP +L+   + G +QTGTGKT +F+LP++  
Sbjct: 7   FDQFGFQPFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINN 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
           +   +  V+    +I  P+RELA Q+ +   K  K     + V L+IGG   +    KL+
Sbjct: 67  VNPEKDAVQ---AVITAPSRELATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++  + LVIDEAD  LDMGF+  + +I   +P   Q 
Sbjct: 124 KQPQIIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQM 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL- 239
           L+FSAT+  +L+     +++NP+   +    + ++T+EH  +AT ++   K  LL+ +L 
Sbjct: 184 LVFSATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSR--NKLDLLKNVLV 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            SQ  +   I+F N K     + + L ++G  V  IHG+++ R R + +   +    Q +
Sbjct: 242 GSQPYL--AIVFTNTKTTADEVANGLIERGLKVAKIHGDVNPRERKRTMKQIENLDYQYV 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+DI  + HV N+++P+  + YIHR GRTGRAG  G A TL    D   ++ 
Sbjct: 300 VATDLAARGIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQ 359

Query: 360 IEKL-IE-KKVDWLNGDLSSL 378
           +EK+ IE K VDW N +  +L
Sbjct: 360 LEKMGIEFKHVDWKNKEFVTL 380


>gi|320582894|gb|EFW97111.1| pre-mRNA processing RNA-helicase, putative [Pichia angusta DL-1]
          Length = 752

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 143/409 (34%), Positives = 222/409 (54%), Gaps = 17/409 (4%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LGL   +  A+   G+  PTPIQ + +P V+  HD+ GIA+TG+GKT +F+LP+   L  
Sbjct: 195 LGLPLSLRSALDSLGFEAPTPIQCEALPNVMSGHDLIGIAKTGSGKTLAFLLPLFRQLLA 254

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
             A   + R L++ PTRELA Q+ +    + +   L      GG     Q  ++++G D+
Sbjct: 255 NPAAPSV-RALVMTPTRELAMQIFNESSVFLEALKLRGCCCYGGQSISQQIAEIKKGCDL 313

Query: 126 LICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ++ TPGRI+D    N G++L ++++  LV+DEADRM DMGF P +  I  +    RQT+L
Sbjct: 314 VVGTPGRIIDLLCANNGRVLRLSHVTYLVLDEADRMFDMGFEPQVMKILKVTRPDRQTVL 373

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL--LQ 240
           FSAT    ++ ++   L +P  + V   +   + I   F     +  K   LLQ L   Q
Sbjct: 374 FSATFPPRMEALARRCLTDPVEVLVGAKNLVNDKIMQQF-EILDEEQKFGRLLQVLARFQ 432

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S D+ K  +IF +++ +  +L + L  +G+   ++HG  +Q  R  I+S+FK   I ++V
Sbjct: 433 SSDSGKI-LIFVDKQDSCDSLANQLIIRGYPTLSLHGGKEQIDRDGIISDFKSNVIDILV 491

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+ +A+RGLD+ D+  V N+D PN  E+Y+HR+GRTGRAGR G A T V +   +    I
Sbjct: 492 ATSVASRGLDVKDLNLVVNYDSPNHMEDYVHRVGRTGRAGRSGTAVTFVTRHQERSASDI 551

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            +L+E         LS   PP E   IA     +      +  +GF  R
Sbjct: 552 VRLLE---------LSGTQPPAELAQIASRFREKLKRGEVKYGSGFGGR 591


>gi|115397285|ref|XP_001214234.1| hypothetical protein ATEG_05056 [Aspergillus terreus NIH2624]
 gi|121738336|sp|Q0CMM8|DBP10_ASPTN RecName: Full=ATP-dependent RNA helicase dbp10
 gi|114192425|gb|EAU34125.1| hypothetical protein ATEG_05056 [Aspergillus terreus NIH2624]
          Length = 928

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 136/398 (34%), Positives = 214/398 (53%), Gaps = 45/398 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIP+++   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 91  FQAMGLNANLLKAITRKGFSVPTPIQRKTIPVIMDDRDVVGMARTGSGKTAAFVIPMIEK 150

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   ++    R LIL P+RELA Q     ++ GK  +L   LL+GG   E Q   +   
Sbjct: 151 LKSHSSKF-GARGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFGMMAGN 209

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P TRQTLL
Sbjct: 210 PDIVIATPGRFLHLKVEMNLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPTTRQTLL 269

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL------- 235
           FSAT+   L + +   LQ P  I ++T S  +  +++ F +  +   K+ ALL       
Sbjct: 270 FSATLPKSLVEFARAGLQEPTLIRLDTESKISPDLQNAFFSVKSA-DKEGALLYILHEVI 328

Query: 236 ---------QQLLQSQD---------------------------TMKNGIIFCNQKKNVV 259
                     Q LQ +                            T  + I+F   K +V 
Sbjct: 329 KMPTGPTEVAQRLQEEKANSKDSKNSKKRKRSEMDKAVNMKESPTKHSTIVFAATKHHVD 388

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            L   L + GF+V   +G++DQ +R   ++NF+ G   ++V +D+AARG+DIP + +V N
Sbjct: 389 YLYSLLREAGFAVSYAYGSLDQTARKIQVNNFRTGLSNILVVTDVAARGIDIPILANVIN 448

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +D P++ + ++HR+GRT RAGR G +++LV   D  ++
Sbjct: 449 YDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDADAPYL 486


>gi|328783258|ref|XP_392069.4| PREDICTED: ATP-dependent RNA helicase abstrakt isoform 1 [Apis
           mellifera]
          Length = 621

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 139/374 (37%), Positives = 208/374 (55%), Gaps = 24/374 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G VKPTPIQI+ IP VL   D+ GIA TG+GKT  FVLP++  
Sbjct: 182 FKEMKFHRGILNGLEQKGIVKPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFVLPIIMF 241

Query: 63  -LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNY------NLTVALLIGGIP 111
            LE+  A    R   P  LI+ P+RELA Q  D    Y  +        +   L IGG+P
Sbjct: 242 CLEQEVAMPFVRNEGPYGLIICPSRELAKQTYDIIRHYTNSLRQAGCPEIRSCLAIGGVP 301

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
                + + +G  +++ TPGR++D  ++  + ++    L +DEADRM+DMGF   ++ I 
Sbjct: 302 VSESLEVINKGVHIMVATPGRLMDMLDKKMVKLSVCRYLCMDEADRMIDMGFEEDVRTIF 361

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  + + L  P  + +N   + A ++    V    +Y K+
Sbjct: 362 SFFRGQRQTLLFSATMPKKIQNFARSALVKP--VTINVGRAGAASMN---VVQEVEYVKQ 416

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K++V  +   L  +G    AIHG  DQ  R + +  
Sbjct: 417 EAKIVYLLECLQKTPPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERSRSVEA 476

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD  DV HV N+D+P+  ENY+HRIGRTGR+GR G A T + 
Sbjct: 477 FREGRKDVLVATDVASKGLDFADVQHVINYDMPDDVENYVHRIGRTGRSGRTGIATTFIN 536

Query: 351 KE-------DIKHI 357
           K        D+KH+
Sbjct: 537 KANDESVLLDLKHL 550


>gi|297841061|ref|XP_002888412.1| hypothetical protein ARALYDRAFT_315588 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334253|gb|EFH64671.1| hypothetical protein ARALYDRAFT_315588 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 587

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 141/403 (34%), Positives = 219/403 (54%), Gaps = 28/403 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     V+  + + G V+PTPIQ++ +P++L   D+ GIA TG+GKT  FVLPM+ 
Sbjct: 143 NFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIM 202

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
           I  +    + +     P  LI+ P+RELA Q  +  E++           L   L IGGI
Sbjct: 203 IALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGI 262

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + ++RG  +++ TPGR+ D   + K+ ++    L +DEADR++D+GF   I+ +
Sbjct: 263 DMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREV 322

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q  + + L  P  + VN   + A  ++      Y +   
Sbjct: 323 FDHFKSQRQTLLFSATMPTKIQIFARSALVKP--VTVNVGRAGAANLDVIQEVEYVKQEA 380

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K   L + LQ   T    +IFC  K +V ++   L  +G    AIHG  DQ  R   +S+
Sbjct: 381 KIVYLLECLQK--TSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISS 438

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 439 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 498

Query: 351 KE-------DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
           K        D+KH      L+++    +   L+ LN P+E+ +
Sbjct: 499 KNQSETTLLDLKH------LLQEAKQRIPPVLAELNDPMEEAE 535


>gi|258611679|ref|ZP_05711599.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|258605374|gb|EEW17982.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
          Length = 424

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 134/381 (35%), Positives = 214/381 (56%), Gaps = 12/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G  P +  A+   G+ +PT +Q K IP +L+   + G +QTGTGKT +F+LP++  
Sbjct: 19  FDQFGFQPFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINN 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
           +   +  V+    +I  P+RELA Q+ +   K  K     + V L+IGG   +    KL+
Sbjct: 79  VNPEKEAVQ---AVITAPSRELATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLK 135

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++  + LVIDEAD  LDMGF+  + +I   +P   Q 
Sbjct: 136 KQPQIIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQM 195

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL- 239
           L+FSAT+  +L+     +++NP+   +    + ++T+EH  +AT ++   K  LL+ +L 
Sbjct: 196 LVFSATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSR--NKLDLLKNVLV 253

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            SQ  +   I+F N K     + + L ++G  V  IHG+++ R R + +   +    Q +
Sbjct: 254 GSQPYL--AIVFTNTKTTADEVANGLIERGLKVAKIHGDVNPRERKRTMKQIENLDYQYV 311

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+DI  + HV N+++P+  + YIHR GRTGRAG  G A TL    D   ++ 
Sbjct: 312 VATDLAARGIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQ 371

Query: 360 IEKL-IE-KKVDWLNGDLSSL 378
           +EK+ IE K VDW N +  +L
Sbjct: 372 LEKMGIEFKHVDWKNKEFVTL 392


>gi|189533973|ref|XP_001922220.1| PREDICTED: probable ATP-dependent RNA helicase DDX10 [Danio rerio]
          Length = 864

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 140/373 (37%), Positives = 217/373 (58%), Gaps = 14/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  +L+A Y +PT IQ +TI   LQ  DV G A+TG+GKT +F++P+L  
Sbjct: 72  FSDFPLSKKTLKGLLEAQYRQPTEIQRQTIGFALQGRDVLGAAKTGSGKTLAFLIPVLEC 131

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L  E+  A   +   LI+ PTRELA Q  +   K GKN+  +  L+IGG   + +++K+ 
Sbjct: 132 LYREQWTAMDGLG-ALIISPTRELAYQTFEVLRKVGKNHEFSAGLVIGGKDLKDESEKIH 190

Query: 121 RGADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           R  +++ICTPGR+L H +       +++ +LV+DEADR+LDMGF   +  I   +P +RQ
Sbjct: 191 R-TNIIICTPGRLLQHMDETATFHASDLHMLVLDEADRILDMGFADTLNAIVENLPKSRQ 249

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQ 237
           TLLFSAT T  ++ ++   L++P+ + V+  +  ST  T+E  +V    +  +K  +L  
Sbjct: 250 TLLFSATQTRSVKDLARLSLKDPEYVWVHEQAKFSTPATLEQNYVV--CELHQKVNMLYS 307

Query: 238 LLQSQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L+S    K  + F  C + + +  +   L + G SV A+HG   Q  R+++ ++F   T
Sbjct: 308 FLRSHLQKKIIVFFACCKEVQYLFRIFCRL-RPGISVLALHGKQQQMKRVEVYNDFVRKT 366

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++ A+D+AARGLD P V  V  FD P  A  YIHR+GRT R    G+A  ++   + K
Sbjct: 367 SAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEK 426

Query: 356 HIDAIEKLIEKKV 368
            +  I +L EKKV
Sbjct: 427 GM--ISQLQEKKV 437


>gi|332024917|gb|EGI65105.1| ATP-dependent RNA helicase abstrakt [Acromyrmex echinatior]
          Length = 625

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 204/374 (54%), Gaps = 24/374 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G +KPTPIQ++ IP VL   D+ GIA TG+GKT  FVLP++  
Sbjct: 186 FKEMKFHKGILYGLEQKGIIKPTPIQVQGIPTVLSGRDMIGIASTGSGKTLVFVLPIIEF 245

Query: 63  -----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT------VALLIGGIP 111
                ++    +   P  LI+ P+RELA Q  D    Y  +   T        L IGG+P
Sbjct: 246 CLEQEIDMPFIKKEGPYGLIICPSRELAKQTYDIIRHYTNSLRQTDCPEIRCCLAIGGVP 305

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
                  + +G  +++ TPGR++D  ++  + ++    L +DEADRM+DMGF   ++ I 
Sbjct: 306 VSESLAIINKGVHIMVATPGRLMDMLHKKMVTLSVCRYLCMDEADRMIDMGFEEDVRTIF 365

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM   +Q  + + L  P  + +N   + A ++    V    +Y K+
Sbjct: 366 SFFKGQRQTLLFSATMPKRIQNFARSALVKP--VTINVGRAGAASMN---VIQEVEYVKQ 420

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K++V  +   L  +G    AIHG IDQ  R + +  
Sbjct: 421 EAKIVYLLECLQKTAPPVLIFAEKKRDVDAIHEYLLIKGVEAVAIHGGIDQEERSRSVEA 480

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+D+A++GLD  DV HV N+D+P+  ENY+HRIGRTGR+GR G A T + 
Sbjct: 481 FRAGRKDVLVATDVASKGLDFADVQHVINYDMPDDVENYVHRIGRTGRSGRTGIATTFIN 540

Query: 351 KE-------DIKHI 357
           K        D+KH+
Sbjct: 541 KANDESVLLDLKHL 554


>gi|195338535|ref|XP_002035880.1| GM15916 [Drosophila sechellia]
 gi|194129760|gb|EDW51803.1| GM15916 [Drosophila sechellia]
          Length = 681

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 125/356 (35%), Positives = 203/356 (57%), Gaps = 18/356 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    L   +V  V  +GY  PTPIQ + IP++    D+   AQTG+GKTASF+LP+++
Sbjct: 266 NFTSADLRGIIVENVKKSGYKVPTPIQKRAIPVITAGRDLMACAQTGSGKTASFLLPIIS 325

Query: 62  IL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            L       E GR     P+ +I+ PTRELA Q+ D   K+     L + ++ GG  F  
Sbjct: 326 KLLDDPQDLEFGR-----PQAVIVSPTRELAIQIFDEARKFAYETYLKIGIVYGGTSFRH 380

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           QN  + +G+ VLI T GR+LD  +R  +   +   +V+DEADRMLDMGF   ++ + + V
Sbjct: 381 QNDCITKGSHVLIATLGRLLDFVDRAFVTFEDTRFVVLDEADRMLDMGFSEGMRKLMTHV 440

Query: 175 PF--TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                 QTL+FSAT  +++Q+++  FL N   + +         ++   +   ++++K+ 
Sbjct: 441 TMRPQHQTLMFSATFPEDIQRLAGEFLNNYVFVAIGMVGGACSDVKQT-IYEVSKFNKRA 499

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L++ L +  D     I+F   K+    L   L +  F   +IHG+  Q  R + L +FK
Sbjct: 500 KLMEILREEADGT---IVFVETKRGADFLASYLSETEFPTTSIHGDRLQSQREQALRDFK 556

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            G++++++A+ +A+RGLDI ++ HV N+D+P   ++Y+HRIGRTGR G +G+A T 
Sbjct: 557 NGSMKVLIATSVASRGLDIKNIKHVINYDMPKNIDDYVHRIGRTGRVGNNGRATTF 612


>gi|289621648|emb|CBI52431.1| unnamed protein product [Sordaria macrospora]
          Length = 730

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 129/389 (33%), Positives = 204/389 (52%), Gaps = 31/389 (7%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L  +++  V + GY +PTPIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L  + +  
Sbjct: 302 LPRRLLDIVKNVGYDEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISELP 361

Query: 68  ARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                     P  LIL PTREL  Q+    +K+      TV  ++GG   E Q   L  G
Sbjct: 362 PLTEYNKNDGPYALILAPTRELVQQIESEAKKFATPLGFTVVSIVGGHSLEEQAYALRNG 421

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177
           A++++ TPGR++D   R  L+ +     ++DEADRM+D GF   +  I   +P T     
Sbjct: 422 AEIIVATPGRLVDCLERRLLVFSQCCYTIMDEADRMIDQGFEEPLTKILDAMPVTNEKPD 481

Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
                               RQT++++ATM   ++++++ +L+ P  + +       +T+
Sbjct: 482 TDDAENPQLMSRYVDGKDRYRQTMMYTATMPPIVERIAKKYLRRPAIVTIGNAGEAVDTV 541

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
           E   V   A   K+   LQ++L S       I+F N K+N   +   ++  GFS   +HG
Sbjct: 542 EQR-VEFVAGEDKRKKRLQEILNSGQFKPPIIVFVNIKRNCDMVARDIKHMGFSAVTLHG 600

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           +  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y HRIGRTG
Sbjct: 601 SKTQEQREAALASLRNGQTDILVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTG 660

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RAG+ G A T +  ED   +  + ++I K
Sbjct: 661 RAGKSGVAITFLGPEDNDVLYDLRQIISK 689


>gi|225463593|ref|XP_002271370.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
          Length = 543

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 140/404 (34%), Positives = 223/404 (55%), Gaps = 30/404 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     ++  +   G V+PTPIQ++ +P++L   D+ GIA TG+GKT  FVLP++ 
Sbjct: 99  NFKDMRFPEPILKNLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPLIM 158

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
           +  +    + +     P  L++ P+RELA Q  +  E++           L   L IGG+
Sbjct: 159 VALQEEVSMPIVPGEGPFGLVICPSRELARQTYEVVEQFLVPMRECGYPELRPLLCIGGV 218

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + +++G  +++ TPGR+ D   + KL ++N   L +DEADR++D+GF   I+ +
Sbjct: 219 DMRSQLEVVKKGVHIIVATPGRLKDMLAKKKLNLDNCRYLTLDEADRLVDLGFEDDIREV 278

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q  + + L  P  + VN   + A  ++   V    +Y K
Sbjct: 279 FDHFKAQRQTLLFSATMPTKIQNFARSALVKP--VTVNVGRAGAANLD---VIQEVEYVK 333

Query: 231 KCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A +  LL+  Q T    +IFC  K +V ++   L  +G    AIHG  DQ  R   +S
Sbjct: 334 QEAKIVYLLECLQKTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAIS 393

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T +
Sbjct: 394 SFKAGKKDVLVATDVASKGLDFPDIKHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 453

Query: 350 AKE-------DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
            K        D+KH      L+++    +   L+ LN P+E +D
Sbjct: 454 NKNQSETTLLDLKH------LLQEAKQRIPPVLAELNDPMEDVD 491


>gi|219880759|gb|ACL51654.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Callithrix
           jacchus]
          Length = 654

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 136/393 (34%), Positives = 218/393 (55%), Gaps = 25/393 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D+ +   ++  +    Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+
Sbjct: 175 NFSDIDMGEIILGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILS 234

Query: 62  -------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +   GR   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 235 QIYTDGPGEALKAVKGNGRCGRRKQYPVSLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 294

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEAD+MLDMGF P 
Sbjct: 295 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIALDFCKYLVLDEADKMLDMGFEPQ 354

Query: 167 IQNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    +
Sbjct: 355 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVI 414

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             + +   K + L  +L +       ++F   KK   +L   L  +G +  +IHG+  QR
Sbjct: 415 --WVEDLDKRSFLLDILGATGRDSLTLVFVETKKGADSLEDFLYHEGHACTSIHGDRSQR 472

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 473 DREEALRQFRSGRSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNL 532

Query: 343 GKAFTLVAKEDIK-HIDAIEKLIEKKVD---WL 371
           G A +   ++++    D ++ L+E K +   WL
Sbjct: 533 GLATSFFNEKNVNIAKDLLDLLVEAKQEVPSWL 565


>gi|153803281|ref|ZP_01957867.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-3]
 gi|153803543|ref|ZP_01958129.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-3]
 gi|124120924|gb|EAY39667.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-3]
 gi|124121185|gb|EAY39928.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-3]
          Length = 406

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A L     +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 1   MSFSSLALSADLIQA-LPKAITEPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++   + G    L    L GG+    Q   L 
Sbjct: 60  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKAEQQNALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 116 ENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQALASQTASVRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 175 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 233

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK GT Q+++
Sbjct: 234 HQ--WPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQTQREAALAEFKNGTTQVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAI 351

Query: 361 EKLIEKKVDWLNGD 374
             L ++++   N D
Sbjct: 352 RTLTQRQLPVQNLD 365


>gi|45198439|ref|NP_985468.1| AFL080Wp [Ashbya gossypii ATCC 10895]
 gi|74693084|sp|Q755A5|DBP3_ASHGO RecName: Full=ATP-dependent RNA helicase DBP3
 gi|44984326|gb|AAS53292.1| AFL080Wp [Ashbya gossypii ATCC 10895]
          Length = 535

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 130/342 (38%), Positives = 201/342 (58%), Gaps = 7/342 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           + KPTPIQ  + P +L   DV G+A+TG+GKT +F +P +  L   ++  R  + L++ P
Sbjct: 143 FPKPTPIQAVSWPYLLAGKDVIGVAETGSGKTFAFGVPAINSLMSEKSTPRGVKCLVISP 202

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TRELA+Q+ DN  +      L    + GG+  ++Q ++L++ A V++ TPGR+LD    G
Sbjct: 203 TRELASQIYDNLVQLTDKVGLNCCCVYGGVQKDSQREQLKK-AQVVVATPGRLLDLIEEG 261

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQTLLFSATMTDELQKVSENFL 199
              +  ++ LV+DEADRML+ GF   I+ I        RQTL+F+AT   E+++++  F+
Sbjct: 262 SAKLAGVQYLVLDEADRMLEKGFEEDIKRIIKETKSDVRQTLMFTATWPKEVRELASTFM 321

Query: 200 QNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG---IIFCNQK 255
           + P ++ + N    +A       V     + K+  LL+ L Q Q   K     +IF   K
Sbjct: 322 RAPVKVSIGNRDELSANKRITQVVEVIDPFKKEKRLLELLKQYQSGAKKNDKVLIFALYK 381

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           K    +  +L+  G++V AIHG++ Q+ R + LS FK GT  L++A+D+AARGLDIP+V 
Sbjct: 382 KEASRVERNLKYNGYNVAAIHGDLSQQQRTQALSEFKAGTANLLLATDVAARGLDIPNVK 441

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            V N   P   E+Y+HRIGRTGRAG  G A TL  +++ KH+
Sbjct: 442 TVINLTFPLTVEDYVHRIGRTGRAGATGVAHTLFTEQE-KHL 482


>gi|296210932|ref|XP_002752173.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 2
           [Callithrix jacchus]
          Length = 406

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 201/368 (54%), Gaps = 58/368 (15%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 26  FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++  ++   +++  K         
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKSK--------- 252

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                                                      R+  L+ FK     +++
Sbjct: 253 -------------------------------------------RLGSLNKFKAKARSILL 269

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 270 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 329

Query: 361 EKLIEKKV 368
           E LI KK+
Sbjct: 330 EHLIGKKL 337


>gi|328906158|gb|EGG25933.1| DEAD/DEAH box helicase [Propionibacterium sp. P08]
          Length = 686

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 194/347 (55%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LG+  ++V A+   G   P  IQI  IP  +   DV G A TG+GKT +F +P+L+ 
Sbjct: 232 FSALGVPDEIVAALAKMGIAAPFRIQIAAIPDAIAGRDVLGRAATGSGKTLAFGVPLLSR 291

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L       + PR LIL PTRELA Q+AD       +  L+  L+ GG+ +  Q K  ++G
Sbjct: 292 LSAAPREDKRPRALILSPTRELAMQIADVLSPLASSMGLSTILIAGGMSYGPQTKAFKKG 351

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR++D    G   ++ I + V+DEAD M ++GF+  + +I   VP   Q LL
Sbjct: 352 VDLVVATPGRLVDLLETGDADLSGIAVTVLDEADHMAELGFMEAVGSILDAVPEDGQRLL 411

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + K+ + ++ +P   EV++   +  T+ H   A   +  +K  L+ ++    
Sbjct: 412 FSATLDGAVNKLVKRYMHDPVTHEVDSDKGSVSTMTHH--AFQIKPHEKVGLMCEIANRS 469

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
               + I+F   ++    +   L   G    A+HG + Q +R ++L+ FK+G++ ++VA+
Sbjct: 470 ---GHTIVFARTQRGASRMAEQLRGAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVAT 526

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+ DV  V   D P  +++Y+HR GRT RAG  G   +L+
Sbjct: 527 DVAARGIDVDDVTLVLQVDPPMNSKDYLHRSGRTARAGHDGAVVSLI 573


>gi|118783118|ref|XP_312776.3| AGAP003089-PA [Anopheles gambiae str. PEST]
 gi|116129059|gb|EAA08469.4| AGAP003089-PA [Anopheles gambiae str. PEST]
          Length = 400

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 209/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F    ++I
Sbjct: 29  FNSMGLREELLRGIYAYGFEKPSAIQQRSIQPIVKGRDVIAQAQSGTGKTATF---SISI 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     +R  + L L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 86  LQSMDTTLRETQVLCLSPTRELAVQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYG 145

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 146 QHVVSGTPGRVFDMIKRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 205

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 206 ISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 264

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG++ Q+ R +I+  F+ G  +++
Sbjct: 265 ----TITQAVIFCNTRRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRSGQSRVL 320

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 321 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRD 380

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 381 IEQYYSTQIDEMPMNVADL 399


>gi|116207046|ref|XP_001229332.1| hypothetical protein CHGG_02816 [Chaetomium globosum CBS 148.51]
 gi|118597490|sp|Q2HAD8|PRP5_CHAGB RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|88183413|gb|EAQ90881.1| hypothetical protein CHGG_02816 [Chaetomium globosum CBS 148.51]
          Length = 1064

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 132/376 (35%), Positives = 209/376 (55%), Gaps = 18/376 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL+  ++  V   GY KPT IQ++ +P+++   DV G+A+TG+GKT +FVLPML  
Sbjct: 431 WSQCGLTRPILDVVEGLGYEKPTSIQMQALPVIMSGRDVIGVAKTGSGKTMAFVLPMLRH 490

Query: 63  LEKGRARVRMPRT-------LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +     + + P T       LI+ PTREL  Q+  +   + K   L      GG   + Q
Sbjct: 491 I-----KDQDPVTGDDGAIALIMTPTRELCTQIYSDLLPFAKALKLRAIAAYGGNAIKDQ 545

Query: 116 NKKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITS 172
             +L+RGA++++ TPGR++D    N G++  +     LV+DEADRM DMGF P +  I +
Sbjct: 546 IAELKRGAEIIVATPGRMIDLLAANSGRVTNLKRATYLVLDEADRMFDMGFEPQVMKIFN 605

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSK 230
            V   RQT+LFSATM   +  +++  L+ P  I+V   S  A  I      +    ++ +
Sbjct: 606 NVRPDRQTILFSATMPRIIDALTKKVLREPVEIQVGGRSVVAPEITQIVEILDEGKKFVR 665

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
              LL +L    D ++  +IF  +++   +L   + ++G+   +IHG  DQ  R   +S+
Sbjct: 666 LLELLGELYADDDDVR-ALIFVERQEKADDLLREVLRRGYGCMSIHGGKDQEDRNSTISD 724

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK+G   +M+A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + 
Sbjct: 725 FKKGVCPIMIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFIT 784

Query: 351 KEDIKHIDAIEKLIEK 366
           +E       I K +E+
Sbjct: 785 EEQENCAPGIAKALEQ 800


>gi|312069559|ref|XP_003137738.1| hypothetical protein LOAG_02152 [Loa loa]
 gi|307767094|gb|EFO26328.1| hypothetical protein LOAG_02152 [Loa loa]
          Length = 415

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 126/377 (33%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++GL   ++  +   G+ KP+ IQ + I    ++ DV   AQ+GTGKTA+F + +L 
Sbjct: 43  NFDEMGLKENLLRGIYAFGFEKPSAIQQRAIIPCTKKRDVIAQAQSGTGKTATFSVAVLQ 102

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++    V+    L++ PTRELA Q+       G+   +     IGG       +KLE 
Sbjct: 103 NIDETIPEVQ---ALVMAPTRELAQQIQKVMLSLGEYLGVKCHASIGGTNVRDDQRKLES 159

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  NNI++ V+DEAD ML  GF   I ++   +P   Q +
Sbjct: 160 GVHVVVGTPGRVNDMITRQSLQTNNIKMFVLDEADEMLSRGFKEQIYDVFKCMPNDVQVV 219

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+ +V+  F+ +P RI V     T E I   ++    +  K   L    L S
Sbjct: 220 LLSATMPSEVLEVTNRFMNDPIRILVKREELTLEGIRQFYINVEKEEWKFETLCD--LYS 277

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IFCN ++ V  L   + K+ ++V  +HG ++Q  R  I+  F+ G+ ++++ 
Sbjct: 278 TVNVTQAVIFCNTRRKVDYLATQMSKEKYTVSCMHGEMEQSERDVIMREFRSGSSRVLIT 337

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   + + D++ +  IE
Sbjct: 338 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFITEADMRMMKDIE 397

Query: 362 KLIEKKVDWLNGDLSSL 378
                +++ +  D+++L
Sbjct: 398 SFYNTQIEEMPMDIANL 414


>gi|67900874|ref|XP_680693.1| hypothetical protein AN7424.2 [Aspergillus nidulans FGSC A4]
 gi|74656963|sp|Q5AWA6|DBP3_EMENI RecName: Full=ATP-dependent RNA helicase dbp3
 gi|40742814|gb|EAA62004.1| hypothetical protein AN7424.2 [Aspergillus nidulans FGSC A4]
          Length = 498

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 138/360 (38%), Positives = 207/360 (57%), Gaps = 9/360 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ L  S K + A LD G+  PT IQ  T PL+    DV GIA+TG+GKT +F LP L
Sbjct: 74  ISFSFLPPSNKDLYAPLD-GFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCL 132

Query: 61  T-ILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +L+ K + +   P  +++ PTRELA Q+ D   K+ +  ++ VA + GG+  + Q + 
Sbjct: 133 KKVLDLKTKQKSCRPLAVVISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREA 192

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
           L+  A V++ TPGR+ D  N G L +  ++ LV+DEADRMLD GF   I++I S +P + 
Sbjct: 193 LKSAA-VVVATPGRLKDLQNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSK 251

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST---AETIEHCFVATYAQYSKKCAL 234
           RQT++F+AT    ++ ++  F+ +P  + +    S    A +     V     + K+  L
Sbjct: 252 RQTVMFTATWPPIVRNLASTFMTSPVTVTIGGDPSADPRANSRIKQVVEVVKPHEKEQRL 311

Query: 235 LQQLLQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +Q L + Q    + ++ FC  KK  + +   L  +GF V  IHG++ Q+ R + L  FK 
Sbjct: 312 VQILNRHQRGTPDKVLAFCLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEAFKS 371

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+D+AARGLDIP V  V N   P   E+Y+HRIGRTGRAG  G A TL  + D
Sbjct: 372 GAATVLVATDVAARGLDIPHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAITLFTETD 431


>gi|313623752|gb|EFR93892.1| probable ATP-dependent RNA helicase YqfR [Listeria innocua FSL
           J1-023]
          Length = 435

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 134/381 (35%), Positives = 214/381 (56%), Gaps = 12/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G  P +  A+   G+ +PT +Q K IP +L+   + G +QTGTGKT +F+LP++  
Sbjct: 7   FDQFGFQPFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINN 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
           +   +  V+    +I  P+RELA Q+ +   K  K     + V L+IGG   +    KL+
Sbjct: 67  VNPEKDAVQ---AVITAPSRELATQIYNEIRKVTKFSEKEIAVQLVIGGTDKQRAIDKLK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++  + LVIDEAD  LDMGF+  + +I   +P   Q 
Sbjct: 124 KQPQIIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQM 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL- 239
           L+FSAT+  +L+     +++NP+   +    + ++T+EH  +AT ++   K  LL+ +L 
Sbjct: 184 LVFSATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSR--NKLDLLKNVLV 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            SQ  +   I+F N K     + + L ++G  V  IHG+++ R R + +   +    Q +
Sbjct: 242 GSQPYL--AIVFTNTKTTADEVANGLIERGLKVAKIHGDVNPRERKRTMKQIENLDYQYV 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+DI  + HV N+++P+  + YIHR GRTGRAG  G A TL    D   ++ 
Sbjct: 300 VATDLAARGIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQ 359

Query: 360 IEKL-IE-KKVDWLNGDLSSL 378
           +EK+ IE K VDW N +  +L
Sbjct: 360 LEKMGIEFKHVDWKNKEFVTL 380


>gi|72392369|ref|XP_846985.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|62359340|gb|AAX79779.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
 gi|70803015|gb|AAZ12919.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
 gi|261330174|emb|CBH13158.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 569

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 140/359 (38%), Positives = 207/359 (57%), Gaps = 10/359 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           + F+DL     +  A +D GY  PTPIQ    P++L   D+ G+A+TG+GKT  F++P  
Sbjct: 74  LKFSDLVAPDTIHQAFIDLGYKSPTPIQSIAWPILLNSRDLVGVAKTGSGKTMGFMVPAA 133

Query: 60  LTILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNK 117
           L I+ +   RV   P  L+L PTRELA Q+ +   K  +    +T A L GG P   Q +
Sbjct: 134 LHIMAQPPIRVGEGPIALVLAPTRELAVQIEEETRKVLRRVPTITTACLYGGTPKGPQIR 193

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G  V I TPGR++D        +  +  LV+DEADRMLDMGF   I+ I   +   
Sbjct: 194 ALRAGVHVCIATPGRLIDLLEIRAANLLRVTFLVLDEADRMLDMGFEVQIRKICQQIRKD 253

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALL 235
           RQTL+FSAT   E++ ++ +F ++  R+ V +    + A+  +H  V+    Y K+   L
Sbjct: 254 RQTLMFSATWPQEIRNLAASFQRDFIRVHVGSEDLIANADVTQH--VSVVEDYDKQ-RRL 310

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ-GFSVCAIHGNIDQRSRMKILSNFKEG 294
           +++LQ     +  +IF   K+   +L HSL++  G SV AIHG+ +Q  R  +L  F+  
Sbjct: 311 EEILQKVGKQRV-LIFVKTKRTADSLHHSLQRLIGGSVMAIHGDKEQSQRDYVLDRFRRD 369

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
              ++VA+D+AARGLDI ++  V NFD+P   E+Y+HRIGRTGRAG+ G A+T V+  D
Sbjct: 370 ERSVLVATDVAARGLDIKNLDVVINFDMPTNIEDYVHRIGRTGRAGQRGDAYTFVSGAD 428


>gi|307173483|gb|EFN64393.1| Probable ATP-dependent RNA helicase DDX27 [Camponotus floridanus]
          Length = 694

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 132/353 (37%), Positives = 201/353 (56%), Gaps = 2/353 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + LS  ++ A+    +++PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP L  
Sbjct: 116 FYQMNLSRPLLKAITAMNFIQPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPTLER 175

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +      + R L+L PTREL  QV    ++  +   + V L +GG+  + Q   L +
Sbjct: 176 LLYRPLDGPAVSRVLVLVPTRELGVQVYQVTKQLTQFTTVEVGLSVGGLDVKVQESVLRK 235

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++DH N      +NNIE+L++DEADRMLD  F   ++ I      T+QT
Sbjct: 236 NPDIVIATPGRLIDHLNNAPTFSLNNIEVLILDEADRMLDEYFAEQMKYIVKQCARTKQT 295

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+E++ ++   L NP +I V++    A  +   F+    +       +   L 
Sbjct: 296 ILFSATMTEEVKDLAAVSLNNPIKIFVDSNQDVAFNLRQEFIRIRKEREGDREAILAALV 355

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + +IF   KK    L   L   G  V  +HGN+ Q  R++ L  FKE  I +++
Sbjct: 356 CRTFHDHTMIFVQTKKQAHRLHILLGLLGLKVGELHGNLTQPQRLENLQKFKEEEIDILL 415

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           A+D+AARGLDI  V  V NF +P   ++YIHR+GRT RAGR G + +L  +++
Sbjct: 416 ATDVAARGLDISGVKTVINFMMPATLQHYIHRVGRTARAGRGGVSVSLAGEQE 468


>gi|297830946|ref|XP_002883355.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329195|gb|EFH59614.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 612

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 124/374 (33%), Positives = 213/374 (56%), Gaps = 6/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +  ++LG+SP++V A+   G  K  PIQ   +   ++  D+ G A+TGTGKT +F +P++
Sbjct: 101 LAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 160

Query: 61  TILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             + K  A   R R P  L+L PTRELA QV   F +   +  L    L GG P   Q +
Sbjct: 161 DKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPS--LDTICLYGGTPIGQQMR 218

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L+ G DV + TPGR++D   RG L ++ ++ +V+DEAD+ML +GF   ++ I   +P  
Sbjct: 219 QLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEK 278

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+++FSATM   ++ +++ +L NP  I++   S           +  A    + +++  
Sbjct: 279 RQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITTYSILADSYGRASIIGP 338

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+         I+F   K++   L ++L +  F   A+HG+I Q  R + L+ F++G   
Sbjct: 339 LVTEHAKGGKCIVFTQTKRDADRLSYALARS-FKCEALHGDISQSQRERTLAGFRDGHFN 397

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+P+V  + ++++PN  E ++HR GRTGRAG+ G A  + +++  + +
Sbjct: 398 ILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAV 457

Query: 358 DAIEKLIEKKVDWL 371
             IE+ +  +   L
Sbjct: 458 KIIEREVGSRFTEL 471


>gi|297792439|ref|XP_002864104.1| hypothetical protein ARALYDRAFT_918160 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297309939|gb|EFH40363.1| hypothetical protein ARALYDRAFT_918160 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 587

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 143/404 (35%), Positives = 223/404 (55%), Gaps = 30/404 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     V+  + + G V+PTPIQ++ +P++L   D+ GIA TG+GKT  FVLPM+ 
Sbjct: 143 NFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIM 202

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
           I  +    + +     P  LI+ P+RELA Q  +  E++           L   L IGGI
Sbjct: 203 IALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGI 262

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + ++RG  +++ TPGR+ D   + K+ ++    L +DEADR++D+GF   I+ +
Sbjct: 263 DMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREV 322

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q  + + L  P  + VN   + A  ++   V    +Y K
Sbjct: 323 FDHFKSQRQTLLFSATMPTKIQIFARSALVKP--VTVNVGRAGAANLD---VIQEVEYVK 377

Query: 231 KCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A +  LL+  Q T    +IFC  K +V ++   L  +G    AIHG  DQ  R   +S
Sbjct: 378 QEAKIVYLLECLQKTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAIS 437

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T +
Sbjct: 438 SFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 497

Query: 350 AKE-------DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
            K        D+KH      L+++    +   L+ LN P+E+ +
Sbjct: 498 NKNQSETTLLDLKH------LLQEAKQRIPPVLAELNDPMEEAE 535


>gi|157374733|ref|YP_001473333.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157317107|gb|ABV36205.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 465

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 132/387 (34%), Positives = 215/387 (55%), Gaps = 12/387 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  L  +++  +   G  KPT IQ + IP+ L   D+   ++TG+GKT +F+LP +
Sbjct: 20  LQFTDFSLDTRLLKTLDHMGIEKPTEIQQQAIPVGLSGKDLMASSKTGSGKTLAFLLPAM 79

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   RA   R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 80  QRIISTRALSKRDPRVLILLPTRELANQVYSQLRLLVANTQYKAVKILGGENFNDQAKSL 139

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
           ER    ++ TPGR+ DH  +  L +N +E+L++DEADRMLD+GF+  ++ I +     R 
Sbjct: 140 ERDPHFVVATPGRLADHLAQHHLHLNGLELLILDEADRMLDLGFVDQLKAINAAADHKRR 199

Query: 179 QTLLFSATMT-DELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+  +++ +++   L++P  + +   +    +  +  +++ +  +  K ALL 
Sbjct: 200 QTLMFSATLDHNKINEIAAELLKDPMHVSIGAGNIENLDITQRIYLSDHLDH--KEALLN 257

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +L+++   K  IIF   +++   L   L + GF+  ++ G++ Q +R +I+  F  G  
Sbjct: 258 HILKNEKN-KQVIIFTATRQDTDRLATKLAEAGFNTASLSGDLKQNARNQIMDQFSRGLQ 316

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +
Sbjct: 317 DILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWVN 376

Query: 357 IDAIEKLIEK-----KVDWLNGDLSSL 378
              ++  + K      +D L    S L
Sbjct: 377 FKQVQVFLRKTFEISTIDGLEAKFSGL 403


>gi|154340487|ref|XP_001566200.1| DEAD box RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063519|emb|CAM39700.1| putative DEAD box RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 389

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 128/375 (34%), Positives = 207/375 (55%), Gaps = 6/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   GY +PT IQ + I   L+  DV   A +GTGKT++F +    +
Sbjct: 19  FEAMGLKEDLLKGMYRFGYKQPTAIQKRFIMPFLKGRDVIAQASSGTGKTSAFCV---CL 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+      R P+ LIL PTRELA Q  D     G +  L     IGG   E   ++LE G
Sbjct: 76  LQACDPHTREPQALILSPTRELAVQTQDLCNNIGHHMGLKAYACIGGKSTEEDIRRLENG 135

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L +N ++ LV+DEAD ML  GF   I +I  ++P   Q +L
Sbjct: 136 VHIVSGTPGRVFDMIRRKSLRVNGLKTLVLDEADEMLGKGFKAQIHDIYRMIP-PLQIIL 194

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  ++ +++E F+  P  I V     T +++   FV+   + +K   L++  L   
Sbjct: 195 VSATLPADVLEMTEKFMTEPASILVKRDEITVDSVRQYFVSVDEEKNKFDVLME--LYDS 252

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+ + ++FCN +K V  L   + ++ F+V A+HG++ Q  R +I+  F++G  ++++ +
Sbjct: 253 LTIAHAVVFCNTRKKVEQLAKKMTREKFTVVAMHGDMPQAERDEIMRQFRDGHSRVLITT 312

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   E YIHRIGRTGR GR G A T V  ++++ +  IE+
Sbjct: 313 DLWARGIDVERVSLVLNYDLPLAREQYIHRIGRTGRMGRTGLAITFVRHDELRLLRDIEQ 372

Query: 363 LIEKKVDWLNGDLSS 377
               +++ L  ++  
Sbjct: 373 FYATQIEELPANIGE 387


>gi|270009742|gb|EFA06190.1| hypothetical protein TcasGA2_TC009039 [Tribolium castaneum]
          Length = 808

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 127/373 (34%), Positives = 206/373 (55%), Gaps = 5/373 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK---G 66
           P+++  +  AG+ +P+PIQ +  P++L   D+ GIAQTGTGKT +F+LP L  ++     
Sbjct: 234 PEILEEMKKAGFTRPSPIQSQAWPVLLSGEDLIGIAQTGTGKTLAFLLPALIHIDGQNIK 293

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           ++    P  L++ PTRELA Q+    +KY +   +T   + GG     Q K L  G D++
Sbjct: 294 KSERGGPAVLVMAPTRELALQIDKEVKKY-EYKGITAVCIYGGGNRREQIKVLTDGVDIV 352

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D    G L +  +  +V+DEADRMLDMGF P I+ +   +  TRQT++ SAT
Sbjct: 353 IATPGRLNDLAEAGHLEVKYVTYVVLDEADRMLDMGFEPQIRKVMYSIRPTRQTVMTSAT 412

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
               +++++++++ +P +I V T    A  T+            +K         + D  
Sbjct: 413 WPPGVRRLAQSYMVDPIQIYVGTLDLAATHTVTQIIEIIPDDDQEKFRTFMNFATNLDPS 472

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
           +  I FC +K     L   L   G     IHG+ DQ  R + L +  +GT+Q+++A+D+A
Sbjct: 473 EKVIAFCGKKARADELSTELTLAGLQCQTIHGDRDQSDREQALLDIADGTVQILIATDVA 532

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLDI D+ HV N+D P   E Y+HR+GRTGRAG+ GK+ +   + D      +  ++E
Sbjct: 533 SRGLDIDDITHVINYDFPRNIEEYVHRVGRTGRAGKSGKSISYFTRGDWAQAKELIAILE 592

Query: 366 KKVDWLNGDLSSL 378
           +   ++  +L  +
Sbjct: 593 EAQQYVPEELYKM 605


>gi|50294444|ref|XP_449633.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661035|sp|Q6FJG1|FAL1_CANGA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49528947|emb|CAG62609.1| unnamed protein product [Candida glabrata]
          Length = 399

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 129/383 (33%), Positives = 214/383 (55%), Gaps = 14/383 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+  P+ IQ + I  ++   DV   AQ+GTGKTA+F + ML  
Sbjct: 25  FESMDLKEGLLRGIYSYGFEAPSAIQSRAITQIISGKDVIAQAQSGTGKTATFTIGMLQA 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER- 121
           ++  +  ++    L+L PTRELAAQ+       G   N+    + GG   +   KK+++ 
Sbjct: 85  IDLKKHDLQ---ALVLSPTRELAAQIGKVVTNLGDYMNVKAYAMTGGKTMKDDLKKIQKH 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD--MGFIPYIQNITSLVPFTRQ 179
           G  V+  TPGR+LD   R  +   +++ILV+DEAD +L   +GF   I +I + +P T Q
Sbjct: 142 GCQVISGTPGRVLDMIKRRLIETRHVQILVLDEADELLSDTLGFKHQIYDIFTKLPRTSQ 201

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQ 236
            ++ SATM+ E+ ++++ F+ +P +I V     T E I+  +V    +   +   C +  
Sbjct: 202 VVVVSATMSPEILEITKKFMNDPVKILVKRDEITLEGIKQYYVNVEKEEWKFDTLCDIYD 261

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L     T+   +IFCN KK V  L H L++  F+V ++HG++ Q  R ++++ F+ G  
Sbjct: 262 SL-----TITQCVIFCNSKKKVDWLAHKLKQSNFAVISMHGDMKQDERDRVMNEFRTGQS 316

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++++D+ ARG+D+  V  V N+D+P   ENY+HRIGR+GR GR G A   + K D   
Sbjct: 317 RVLISTDVWARGIDVQQVSLVINYDLPEITENYVHRIGRSGRFGRKGVAINFLTKIDASR 376

Query: 357 IDAIEKLIEKKVDWLNGDLSSLN 379
           +  IEK  + KV  +  DLS L+
Sbjct: 377 MKEIEKYYKIKVKPMPADLSELS 399


>gi|240254385|ref|NP_177829.4| ATP binding / ATP-dependent helicase/ RNA binding / helicase/
           hydrolase, acting on acid anhydrides, in
           phosphorus-containing anhydrides / nucleic acid binding
           [Arabidopsis thaliana]
          Length = 891

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 215/369 (58%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P V  A+   GY  PTPIQ KT+PL+L   DV  +A+TG+GKTA+F++PML  
Sbjct: 30  FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++   +  + R LIL PTR+LA Q     ++ GK  +L V+LL+GG   E Q ++L +G
Sbjct: 90  LKQHVPQGGV-RALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKG 148

Query: 123 ADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR++   +    + +  +E +V DEAD +  MGF   +  I + +   RQTL
Sbjct: 149 PDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTL 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L + ++  L+ P+ + ++  +  +  ++  F+    +  K  ALL  + + 
Sbjct: 209 LFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPE-EKYSALLYLVREH 267

Query: 242 QDTMKNGIIFCNQKKNV--VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             + +  +IF + K +V  VN    LE    SVC  +G++DQ +R   +S F+     L+
Sbjct: 268 ISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVC--YGDMDQDARKIHVSRFRARKTMLL 325

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+AARG+DIP + +V N+D P R + ++HR+GR  RAGR G A++ V  ED+ ++  
Sbjct: 326 IVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYMLD 385

Query: 360 IEKLIEKKV 368
           +   + K V
Sbjct: 386 LHLFLSKPV 394


>gi|225719342|gb|ACO15517.1| Eukaryotic initiation factor 4A-III [Caligus clemensi]
          Length = 403

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ ++I  +L+  DV   AQ+GTGKTA+F    ++I
Sbjct: 32  FDSMGLREDLLRGIYAYGFEKPSAIQQRSIKPILKGRDVIAQAQSGTGKTATF---SISI 88

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     +R  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 89  LQSIDTSLRETQCLVLSPTRELAVQIQKVLLALGDYMNVQCHACIGGTNLGEDIRKLDYG 148

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q  L
Sbjct: 149 QHVVSGTPGRVYDMIRRRTLRTRGIKMLVLDEADEMLNKGFKEQIYDVYRYLPPFTQICL 208

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 209 ISATLPHEILEMTSKFMADPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 267

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 268 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGQSRVL 323

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 324 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRD 383

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 384 IEQYYSTQIDEMPMNVADL 402


>gi|255954845|ref|XP_002568175.1| Pc21g11430 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589886|emb|CAP96040.1| Pc21g11430 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 496

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 127/341 (37%), Positives = 198/341 (58%), Gaps = 9/341 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTLILE 79
           +  PTPIQ  T PL+    DV GIA+TG+GKT  F LP L  +++   ++   P+ +I+ 
Sbjct: 100 FPAPTPIQSTTWPLLFAGRDVIGIAETGSGKTLGFGLPCLKKLIDSKSSKPCQPKAVIIS 159

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA Q+ D   K+G +    V  + GG+  + Q + L++ A +++ TPGR+ D  N 
Sbjct: 160 PTRELAMQIYDQLVKFGHHEKTQVTCIYGGVGKDEQRRALQKAA-IVVATPGRLKDLQND 218

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR-QTLLFSATMTDELQKVSENF 198
           G + +  +  LV+DEADRMLD GF   I++I   +P +R QT++F+AT    ++ ++  F
Sbjct: 219 GSIDLGKVNYLVLDEADRMLDKGFEQDIKDILKPMPVSRRQTVMFTATWPRSVRDLAATF 278

Query: 199 LQNPKRIEVNTPSST---AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG---IIFC 252
           ++ P  + +    S    A T     V       K+  L+Q L +SQ   K+    ++FC
Sbjct: 279 MKTPVTVTIGGDPSADPRANTRIKQVVEVVDGREKEGRLVQLLTKSQRGQKSPEKVLVFC 338

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             KK  + + + +  +GF+V  IHG+++Q  R + L  FK+G   +++A+D+AARGLDIP
Sbjct: 339 LYKKEAMRIENLIRNKGFAVAGIHGDLNQSDRFRNLDAFKKGNATVLIATDVAARGLDIP 398

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +V  V N   P   E+Y+HRIGRTGRAG  G A T+  + D
Sbjct: 399 NVKLVINVTFPLTVEDYVHRIGRTGRAGADGLAITMFTEND 439


>gi|145491061|ref|XP_001431530.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398635|emb|CAK64132.1| unnamed protein product [Paramecium tetraurelia]
          Length = 532

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 126/354 (35%), Positives = 201/354 (56%), Gaps = 10/354 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
            Y +PTPIQ    P+++  HD+ GIAQTG+GKT +++LP L  +E  R +   P  LIL 
Sbjct: 90  AYNRPTPIQASVFPIIMSGHDLIGIAQTGSGKTIAYLLPGLVHIESQRKK-GGPMMLILV 148

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA Q+ ++   + + YN+  A + GG     Q   L R  D+++ TPGR++D  + 
Sbjct: 149 PTRELAMQIQEHISYFSEAYNMNSACIYGGADKRPQEMALARDPDIVVATPGRLIDFLDA 208

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
               ++N+  LV+DEADRMLDMGF   ++ I S +   RQT+ FSAT    +Q ++ +  
Sbjct: 209 QVTNLHNVTYLVLDEADRMLDMGFEQQVRKIDSYIREDRQTVFFSATWPKTVQNLACDLC 268

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI-IFCNQKKNV 258
            N + I +   S      ++    T   Y  +       +  + + K+ + IF   KK+ 
Sbjct: 269 HN-EPINLYIGSQEVTINKNITQETICLYQNEKQEELLYILEELSNKDKVLIFVETKKDC 327

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            +L   L + GF   ++HG+  Q+ R  ++  FK    +L+ A+D+A+RGLD+ D+  V 
Sbjct: 328 EDLASYLSEHGFFCMSLHGDKTQQQRDYVMKEFKASKCKLLCATDVASRGLDVRDISLVI 387

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK-VDWL 371
           N+D PN+ +NY+HRIGRTGRAG  G++ T++       +DA++  + K+ VD L
Sbjct: 388 NYDFPNQIDNYVHRIGRTGRAGDKGRSITMIT------LDAMDPRVAKQLVDLL 435


>gi|77166040|ref|YP_344565.1| DEAD/DEAH box helicase-like [Nitrosococcus oceani ATCC 19707]
 gi|254436366|ref|ZP_05049872.1| DEAD/DEAH box helicase domain protein [Nitrosococcus oceani AFC27]
 gi|76884354|gb|ABA59035.1| DEAD/DEAH box helicase-like protein [Nitrosococcus oceani ATCC
           19707]
 gi|207088056|gb|EDZ65329.1| DEAD/DEAH box helicase domain protein [Nitrosococcus oceani AFC27]
          Length = 431

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 146/428 (34%), Positives = 235/428 (54%), Gaps = 15/428 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L L+  ++  +  AG+   TPIQ   +PL+L   DV G AQTGTGKTASF+L  +
Sbjct: 9   ISFDSLNLAEALIQGIQKAGFAICTPIQALALPLLLAGEDVAGQAQTGTGKTASFLLATM 68

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L  E      + PR LI+ PTRELA QV+ + +  G+  NL    + GG  +  Q   
Sbjct: 69  QCLLREPSAGAGQQPRGLIVAPTRELALQVSKDAQFLGQYTNLKCVAVHGGANYRKQRHL 128

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-- 176
           LE+G D+LI TPGR++D++ +  +    I+++V+DEADRM D+GFI  I+ I   +P   
Sbjct: 129 LEQGCDILIGTPGRLIDYYQQRIIGFKKIQVVVLDEADRMFDLGFIRDIRYILRRLPPPD 188

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCAL 234
            R  +LFSAT++  + +++  ++ NP+ + +     T + I     F A   + S   AL
Sbjct: 189 KRLGMLFSATLSLRVMELAYEYMNNPQLLRIEPQKVTVDKITERVYFPANEEKISLLLAL 248

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            ++L+      ++ I+F N K     +   LE  GF    +  ++ Q  R ++L+ F++ 
Sbjct: 249 FKRLVP-----RHAIVFTNTKHVAEKVWGYLEGNGFKAALLSSDVPQGKRQRLLAAFQDR 303

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARGL I  V HVFN+D+P   E+Y+HRIGRT RAG  G A +   ++  
Sbjct: 304 IYPILVATDVAARGLHISTVTHVFNYDLPQDPEDYVHRIGRTARAGASGLAVSFACEDYA 363

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP---QKSTGFDRRKK 411
             +  IE+ I  KV   + +   L  P +++ ++  +  + +   P   QK   F ++K+
Sbjct: 364 FSLPDIEEYIGHKVVPFSVEEEELLVPEQRVFVSHKDKKKSHRRAPHPRQKKKSF-QKKE 422

Query: 412 NYSSQKSH 419
            YS  K+H
Sbjct: 423 TYSGGKNH 430


>gi|302822183|ref|XP_002992751.1| hypothetical protein SELMODRAFT_448879 [Selaginella moellendorffii]
 gi|300139492|gb|EFJ06232.1| hypothetical protein SELMODRAFT_448879 [Selaginella moellendorffii]
          Length = 733

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 132/364 (36%), Positives = 203/364 (55%), Gaps = 18/364 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+  ++V A    G+  PTPIQ++ +PL LQ  D+ G+AQTG+GKTA+F LP+L 
Sbjct: 175 SFGELGVREELVDACTKLGWKAPTPIQVEALPLALQGRDLIGLAQTGSGKTAAFALPILQ 234

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   +       +L PTRELA Q+++ FE  G    +    ++GG+    Q   L +
Sbjct: 235 ALFQ---QCHPFFACVLSPTRELAIQISEQFEALGSQIGVRSVAIVGGVSMVDQAVALGK 291

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+LDH    K   + N++ LV+DEAD++L   F   +  I  +VP  R+T
Sbjct: 292 NPHIVVATPGRLLDHLTNTKGFSLRNVKYLVLDEADKILHNDFEKEVDEILKVVPRERKT 351

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT+++ K+    L+NP ++EV++  +TA T++  +V   A++ K C  +   L 
Sbjct: 352 FLFSATMTNKVAKLQRACLRNPTKVEVSSKYTTALTLKQEYVFVPAKH-KDCYFV--FLL 408

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      ++F     +   L   L   GF    I G + Q  R   L  FK G   L++
Sbjct: 409 NEMAGSTAMVFTRTCDSTRRLALILRSLGFGAIPISGQMSQSKRSGALLKFKAGDRNLLI 468

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A+RGLDIP V      DV     +YIHR+GRT RAGR G+A ++V + D+     I
Sbjct: 469 CTDVASRGLDIPSV------DV-----DYIHRVGRTARAGRSGRAISIVTQYDVDLYKRI 517

Query: 361 EKLI 364
           E LI
Sbjct: 518 EDLI 521


>gi|17064740|gb|AAL32524.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|21387105|gb|AAM47956.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
          Length = 421

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 130/347 (37%), Positives = 196/347 (56%), Gaps = 21/347 (6%)

Query: 45  AQTGTGKTASFVLPMLTILEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGK 97
           AQTG+GKTA+F  P+++ + K +       +RV  P  +IL PTRELA Q+ D  +K+  
Sbjct: 4   AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRVVYPFAVILSPTRELACQIHDEAKKFSY 63

Query: 98  NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
              + V +  GG P   Q ++LERG D+L+ TPGR+ D   R ++ M  I  L +DEADR
Sbjct: 64  QTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADR 123

Query: 158 MLDMGFIPYIQNITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
           MLDMGF P I+ I   +       RQT+LFSAT   ++Q+++ +F+ N   + V    S+
Sbjct: 124 MLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSS 183

Query: 214 AETIEHCFVATYAQYSKKCALLQQLL----QSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269
            + I       + Q S K + L  LL    ++QD     ++F   K+    L + L    
Sbjct: 184 TDLITQ--RVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNE 241

Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329
           F   +IHG+  Q+ R   L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y
Sbjct: 242 FPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDY 301

Query: 330 IHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK----VDWLN 372
           +HRIGRTGRAG+ G A     + + +   ++ +L+++      +WL 
Sbjct: 302 VHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEVPEWLT 348


>gi|325119088|emb|CBZ54640.1| hypothetical protein NCLIV_050680 [Neospora caninum Liverpool]
          Length = 578

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 143/416 (34%), Positives = 214/416 (51%), Gaps = 50/416 (12%)

Query: 10  PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P  +  V++  G+ KPT IQ++  P+ L   D+ GIA+TG+GKT +F+LP +        
Sbjct: 135 PSYILDVINQTGFQKPTAIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPY 194

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L KG      P  LIL PTREL  Q+      +  +  +  A+  GG+P   Q  +LERG
Sbjct: 195 LSKGDG----PIVLILAPTRELVEQIRTQCRTFAASSKIHHAVAYGGVPKRPQIMELERG 250

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A++ +  PGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   RQTL+
Sbjct: 251 AEICVACPGRLIDFLESRVTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLM 310

Query: 183 FSATMTDELQKVSENFL-QNPKRIEVNT------------------PSSTAET------I 217
           +SAT   E+Q ++ +   + P  I V +                  P+S  ET      +
Sbjct: 311 WSATWPKEVQNLARDLCKEEPVHINVGSLDLQACQNIKQEVMVVQAPTSRQETRKVPRRV 370

Query: 218 EHCFV------ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
           E C        +   +Y K+  L+  L +  D  K  +IF   K+   NL   +  +G+ 
Sbjct: 371 EKCADEEEFGDSCGVEYEKRGQLMSLLRRIMDGSKI-LIFAETKRGADNLTRDMRVEGWP 429

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
             ++HG+  Q  R  +L  FK G   +MVA+D+A+RGLD+ D+ HV N+D+PN+ E+YIH
Sbjct: 430 ALSLHGDKKQEERTWVLDEFKNGRNPIMVATDVASRGLDVKDIRHVINYDMPNQIEDYIH 489

Query: 332 RIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
           RIGRTGRAG  G A+T    +         +L  + V  L G    + P LE + +
Sbjct: 490 RIGRTGRAGAKGCAYTFFTPDK-------SRLARELVRVLRGANQPVPPELESLGM 538


>gi|311744584|ref|ZP_07718384.1| ATP-dependent RNA helicase RhlE [Aeromicrobium marinum DSM 15272]
 gi|311312203|gb|EFQ82120.1| ATP-dependent RNA helicase RhlE [Aeromicrobium marinum DSM 15272]
          Length = 413

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 128/359 (35%), Positives = 192/359 (53%), Gaps = 5/359 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L   V+ A+       PTPIQ   IP  L  HDV G A+TG+GKT +F LP+L  
Sbjct: 13  FSSFDLPRPVLSALASRQLDTPTPIQDAVIPDALAGHDVLGKARTGSGKTLAFGLPVLVR 72

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G+ R + PR LIL PTRELA QV D    +    NL++AL+ GG P   Q   +  G
Sbjct: 73  LSGGQRRRKAPRGLILLPTRELATQVRDALVPFADRLNLSMALVYGGTPINRQISAVTAG 132

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR+ D   R  L ++ IE++ +DEAD + D+GF   I  I +  P   Q LL
Sbjct: 133 VDLVIATPGRLGDLLERRALTLDAIEVIALDEADHLCDLGFYKPIDAILAKTPQGAQKLL 192

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  ++ ++    L   +R EV++       + H  V T  +   + A  + L+  +
Sbjct: 193 LSATLDGDVDRLVRRHLPVHRRHEVDSAEDAPADMTHHLVVTRREDRVRVA--RDLIAGE 250

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D     I+F   K     L   L   G +   +HG+++Q  R + L+ F+ GT  ++VA+
Sbjct: 251 D---RSIVFTRTKHGARRLAKQLSTAGLTAVDLHGDLNQNQRERNLARFRNGTADVIVAT 307

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           D+AARG+ +  +G V ++D P   + + HR GRT RAG  G   TL   ED++ + A++
Sbjct: 308 DVAARGIHVDGIGLVVHYDPPAEHKAFTHRSGRTARAGESGIVVTLATPEDLRDVVAMQ 366


>gi|195542171|gb|ACF98296.1| eIF-4A [Pennisetum glaucum]
          Length = 407

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 203/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G+   ++  +   G+ KP+ IQ + +  ++   DV   AQ+GTGK++   L +  I
Sbjct: 36  FDQMGIKDDLLRGIYGYGFEKPSAIQQRAVLPIINGRDVIAQAQSGTGKSSMISLTVCQI 95

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + LIL PTRELA+Q        G   N+ V   IGG       ++LE G
Sbjct: 96  VDTA---VREVQALILSPTRELASQTEKVMLAVGDYLNIQVHACIGGKSISEDIRRLENG 152

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML  GF   I ++   +P   Q +L
Sbjct: 153 VHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDEADEMLSRGFKDQIYDVYRYLPPELQVVL 212

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+  P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 213 ISATLPHEILEMTSKFMTEPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL- 271

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   +    F+V A+HG++ Q+ R  I++ F+ G  +++
Sbjct: 272 ----TITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQQERDAIMTEFRSGATRVL 327

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V K+DI+ +  
Sbjct: 328 ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRKDDIRILRD 387

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 388 IEQYYSTQIDEMPMNVADL 406


>gi|33151461|ref|NP_872814.1| ATP-dependent RNA helicase SrmB [Haemophilus ducreyi 35000HP]
 gi|33147681|gb|AAP95203.1| ATP-dependent RNA helicase protein [Haemophilus ducreyi 35000HP]
          Length = 442

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 211/366 (57%), Gaps = 4/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA+L L+P ++ A+   GY +PT +Q +TIP  L   D+ G A TGTGKTA+F+LP +  
Sbjct: 10  FAELDLAPALLKALAKKGYTRPTSVQAETIPYALAGRDLLGSAPTGTGKTAAFLLPAIQH 69

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVA+  + +     L++A + GG+ ++   +    
Sbjct: 70  LLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAAFTTLSIATITGGVAYQNHGEVFNS 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR++ +          +E+L++DEADRML MGF   ++ I +   + + T 
Sbjct: 130 NQDIVVATPGRLMQYIKEENFDCRAVEVLILDEADRMLQMGFGQDVEKIVAETRWRKYTW 189

Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+  EL    SE  L +P  I  +      + I+  +         K  LL +++ 
Sbjct: 190 LFSATLEGELLTDFSERILTDPLHINADPSRRERKKIQQWYYHA-DNVEHKTKLLARIIT 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + M+  I+F  ++++V  L  +L K+      + G++ Q  R + ++  KEG + ++V
Sbjct: 249 TIE-MEKVIVFVRRREDVRTLSDTLRKRAIRSTYLEGDMAQTQRNQAITRLKEGGVNVLV 307

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI +V +V NFD+P   + Y+HRIGRT RAG+ G A +LV   D K +  I
Sbjct: 308 ATDVAARGIDIDEVDYVINFDLPYSEDTYLHRIGRTARAGKKGSAISLVEAHDYKLLGKI 367

Query: 361 EKLIEK 366
           ++  ++
Sbjct: 368 KRYTQE 373


>gi|322795050|gb|EFZ17898.1| hypothetical protein SINV_07122 [Solenopsis invicta]
          Length = 725

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 149/446 (33%), Positives = 236/446 (52%), Gaps = 22/446 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + LS  ++ A+    +V PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP+L  
Sbjct: 161 FYQMNLSRPLLKAITAMNFVHPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPVLER 220

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +      + R L+L PTREL  QV    ++  +   + V L +GG+  + Q   L +
Sbjct: 221 LLYRPLDGPAISRVLVLVPTRELGVQVYQVTKQLAQFTTVEVGLSVGGLDVKIQEGVLRK 280

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I      TRQT
Sbjct: 281 NPDIVIATPGRLIDHLRNAPTFSLDSIEVLILDEADRMLDEYFAEQMKYIVKQCSRTRQT 340

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+E++ ++   L  P +I V++    A  +   F+    +       +   L 
Sbjct: 341 ILFSATMTEEVKDLAAVSLDKPIKIFVDSNQDVAFNLRQEFIRIRKEREGDREAILAALV 400

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F   KK    L   L   G  V  +HGN+ Q  R++ L  FK+  I +++
Sbjct: 401 CRTFHDHAMVFVQTKKQAHRLHILLGLLGVKVGELHGNLTQPQRLENLRKFKDEEIDILL 460

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V NF +P   ++YIHR+GRT RAGR G + +L  +++   +  +
Sbjct: 461 ATDVAARGLDISGVKTVINFVMPATLQHYIHRVGRTARAGRGGVSVSLAGEQERSLVKEV 520

Query: 361 EKLIEKKV----------DWLNGDLSSLNPPLEKI--------DIAQ-HNHARKNNPIPQ 401
            K  + +V          +  N  L SL   +EKI        ++A+  N A +   + +
Sbjct: 521 IKQAKNQVKNRIIPPDIIEKYNKKLQSLESDVEKILQEEKSEKELAKVENEANRVEKLLK 580

Query: 402 KSTGFDRRKKNYSSQKSHIPLKESEK 427
                D+R KN+   K  +  K+ EK
Sbjct: 581 VEDDKDKR-KNFRLTKKQVKSKKHEK 605


>gi|312889170|ref|ZP_07748727.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311298332|gb|EFQ75444.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 404

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 151/390 (38%), Positives = 220/390 (56%), Gaps = 15/390 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D   +  +   +   GY  PTPIQ   IP++L+ HD+   AQTGTGKTA+++LP+L
Sbjct: 1   MTFQDFNFNEPLFEGIQSMGYTTPTPIQGMAIPIILEGHDLIACAQTGTGKTAAYLLPVL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQN 116
             I  K + ++    TLIL PTRELA Q+    +       +T   + GG     +E Q 
Sbjct: 61  DHISRKTKPKIN---TLILAPTRELAQQIDQQIQGLAYFTGVTSVAIFGGGDGSVYEQQR 117

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K ++  A++LI TPGR L H   G L +++++ L++DEADRMLDMGF+  I  I S +P 
Sbjct: 118 KAIQHHANILIATPGRFLAHLASGVLKLDDLQHLILDEADRMLDMGFMDDIMRIISFLPK 177

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSATM   ++K++ + L NP++I +   S  A  I+      Y   ++K AL +
Sbjct: 178 KRQTLLFSATMPGRIRKLAGSILNNPQQINIAL-SQPAVGIDQQIYKVYD--NQKTALTE 234

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL+      + IIF + K+ V  +   L K    V A H ++ Q  R +IL  FK   +
Sbjct: 235 MLLKDA-AYTSVIIFASTKEKVKEVYKVLGKLKVKVEAFHSDLKQAEREEILLQFKNRKL 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q+++ +D+ +RG+D+  +  V N+DVP   E+YIHRIGRT RA   G A T V + D + 
Sbjct: 294 QVLIGTDVLSRGIDVEGIDLVINYDVPGDPEDYIHRIGRTARAATTGTAITFVNERDQRK 353

Query: 357 IDAIEKLI--EKKVDWLNGDLSSLNPPLEK 384
           +  IE LI  E KV  L  +L    PP+ K
Sbjct: 354 LINIESLIGREIKVSELPAELG--EPPVFK 381


>gi|229106040|ref|ZP_04236660.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-28]
 gi|228677375|gb|EEL31632.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-28]
          Length = 345

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 114/322 (35%), Positives = 197/322 (61%), Gaps = 6/322 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++  LS +++ A+   GY  PT +Q + IP+ L++ D+   +QTG+GKTASF +P+  
Sbjct: 5   EFSNYALSKEIIRALTGLGYEHPTEVQGEVIPVALKKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTQRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++K+S  ++ +P  IE+     T + IEH    T  +   K +LL+ +   
Sbjct: 182 LFSATLPEDVEKLSRTYMDSPTHIEIKAAGITTDKIEHTLFETREE--DKLSLLKDVTTI 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++   + IIFC  ++NV ++   L +  +    IHG + Q  R +++ +F++G  + +VA
Sbjct: 240 ENP-DSCIIFCRTQENVDHVFRQLNRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVP 323
           +D+AARG+DI ++ HV N+D+P
Sbjct: 299 TDVAARGIDIDNITHVINYDIP 320


>gi|302138848|gb|ADK94762.1| vasa [Clarias gariepinus]
          Length = 681

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 150/427 (35%), Positives = 228/427 (53%), Gaps = 21/427 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  AGYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 246 MTFEEAHLCETLNRNVSRAGYVKPTPVQKYGIPIISAGRDLMACAQTGSGKTAAFLLPIL 305

Query: 61  T-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G A      V+ P  +I+ PTREL  Q+     K+     +   ++ GGI    
Sbjct: 306 QRLMSDGAAASKFSEVQEPEVIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGISTGY 365

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +++ +G +VL  TPGR+LD   RGK+ ++ +  LV+DEADRMLDMGF   ++ + S  
Sbjct: 366 TIQEVLKGCNVLCGTPGRLLDIIGRGKVGLSKVRYLVLDEADRMLDMGFETDMRKLVSSP 425

Query: 175 PF----TRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +++Q+++ +FL +N   + V         IE   +    +YS
Sbjct: 426 GMPPKEQRQTLMFSATYPEDIQRLAADFLKENYLFLVVGVVGGACSDIEQLIIQV-TRYS 484

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL+ L  + D  +  ++F   K++   +   L ++     +IHG+ +QR R K LS
Sbjct: 485 KREQLLEMLKTTGD--ERTMVFVETKRSADFIATFLCQEKVPTTSIHGDREQREREKALS 542

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G   ++VA+ +AARGLDI  V HV NFD+P   E Y+HRIGRTGR G  G+A +  
Sbjct: 543 DFRTGKCPVLVATSVAARGLDIEHVQHVVNFDLPKSIEEYVHRIGRTGRCGNTGRAVSFF 602

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             E   H      L    V  L+G    +   LE+I  + H      NP  +     D R
Sbjct: 603 DPEPDAH------LARSLVKVLSGAQQEVPSWLEEIAFSAHG-TTGFNPHGKVFASTDTR 655

Query: 410 KKNYSSQ 416
           K ++ +Q
Sbjct: 656 KGSFMTQ 662


>gi|227496959|ref|ZP_03927211.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
 gi|226833567|gb|EEH65950.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
          Length = 468

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 193/368 (52%), Gaps = 5/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+ P++V  +   G+  P PIQ  T+P  L+  DV G  +TG+GKT +F LP++  
Sbjct: 35  FASLGVDPELVADLDSRGFTSPFPIQTATLPDTLRGRDVLGRGRTGSGKTLAFSLPLVQR 94

Query: 63  LEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L    A R   P  L+L PTRELA Q+AD         +LTV  + GG+  + Q K L  
Sbjct: 95  LADDDAPRPGYPLGLVLAPTRELALQIADTIRPLATALDLTVTTVFGGVSQKPQEKALAA 154

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++  PGR+LD   +G + ++++ I V+DEAD M D+GF+P ++ I    P   Q +
Sbjct: 155 GVDIVVACPGRLLDLMGQGIVRLDDVAITVLDEADHMADLGFLPNVRRIMRATPPRGQRM 214

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ + + K+ + FL +P    V+  SS    ++H  V T A  + K  L+  L   
Sbjct: 215 LFSATLDNGVDKLVDEFLHDPLHHSVDPASSPVRDMDH-RVWTVADKTAKDGLVLHLASG 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K     L   L   G     + GN+ Q +R + +  F  G   +MVA
Sbjct: 274 T---GQRILFTRTKHLARRLARKLVAAGIPAVELQGNMSQNARERAMGAFSAGQAHVMVA 330

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+  V  V + D P   + Y+HR GRT RAG  G   TLV  E    +  + 
Sbjct: 331 TDIAARGIDVSGVELVVHVDPPAEHKAYLHRSGRTARAGASGTVVTLVLPEQKHDVQVLL 390

Query: 362 KLIEKKVD 369
           K  + K D
Sbjct: 391 KKAKIKAD 398


>gi|322494127|emb|CBZ29424.1| putative ATP-dependent RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 622

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 134/377 (35%), Positives = 205/377 (54%), Gaps = 16/377 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA + L+P +   V    Y KPTP+Q   IP VL   D+   AQTG+GKTA++++P +  
Sbjct: 143 FATMALAPALAENVNRCRYQKPTPVQKYGIPCVLNGSDLMACAQTGSGKTAAYLIPAINF 202

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +        K       P  L+L PTREL+ Q+ +   K+     +   ++ GG     Q
Sbjct: 203 MLVNNLNRSKPTNSQSAPSALVLSPTRELSIQIYEEGRKFTYRTGIRCVVVYGGADPRHQ 262

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS--- 172
             +L RG  +L+ TPGR+ D F RG    +++  LV+DEADRMLDMGF P I+ I     
Sbjct: 263 IHELTRGCGLLVATPGRLSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRAIVQGPD 322

Query: 173 ---LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                P  RQTLL+SAT   E+Q+++  FL +   ++V    ST E I    V       
Sbjct: 323 SDMPPPGERQTLLYSATFPKEIQQMAREFLYHHHFLQVGRVGSTTENITQD-VRWVEDVD 381

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL+ L + Q   +  ++F  +K++   L   L +      +IHG+  QR R + L 
Sbjct: 382 KRGCLLEVLKEHQG--ERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALD 439

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G  +++VA+D+A+RGLDIP+V  V  +D+P+  ++Y+HRIGRTGRAG+ G A +  
Sbjct: 440 IFKSGVCRVLVATDVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGRTGRAGKRGTALSFF 499

Query: 350 AKEDIKHIDAIEKLIEK 366
             ++   +D +  L+ +
Sbjct: 500 NDKNRNIVDDLIPLLRE 516


>gi|119495979|ref|XP_001264763.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
 gi|143359979|sp|A1D373|PRP5_NEOFI RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|119412925|gb|EAW22866.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
          Length = 1193

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 208/375 (55%), Gaps = 10/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M ++  GL  + +  +   GY  PT IQ + IP ++   DV G+A+TG+GKT +F++PM 
Sbjct: 557 MKWSQCGLGVQTLDVIHRLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMF 616

Query: 61  TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +   R    M  P  LI+ PTRELA Q+  + + + K  NL      GG P + Q  +
Sbjct: 617 RHIRDQRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAE 676

Query: 119 LERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I + + 
Sbjct: 677 LKRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIR 736

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT+LFSAT    ++ ++   L  P  I V   S  A  I    V    + +K   LL
Sbjct: 737 PDRQTVLFSATFPRNMEALARKSLTKPIEIVVGGKSVVAPEITQ-IVEVRNEDTKFVRLL 795

Query: 236 QQL--LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
           + L  L S D  ++   +IF ++++    L   L ++G+   +IHG  DQ  R   + +F
Sbjct: 796 EILGNLYSDDANEDARALIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDF 855

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + +
Sbjct: 856 KAGIFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTE 915

Query: 352 EDIKHIDAIEKLIEK 366
           E  ++   I K + +
Sbjct: 916 EQERYSVDIAKALRQ 930


>gi|308813391|ref|XP_003084002.1| putative RNA helicase, DRH1 (ISS) [Ostreococcus tauri]
 gi|116055884|emb|CAL57969.1| putative RNA helicase, DRH1 (ISS) [Ostreococcus tauri]
          Length = 1118

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 136/360 (37%), Positives = 197/360 (54%), Gaps = 29/360 (8%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKG------------ 66
           GY  PTPIQ +  P++L+  DV  IA+TG+GKT  F+LP L  I+ +G            
Sbjct: 105 GYDAPTPIQAEAWPILLKGKDVVAIAKTGSGKTCGFLLPALAKIVAEGTQKAPEMQLVDG 164

Query: 67  --RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
             R     P  ++L PTRELA Q+ D   K+        A+L GG     Q + L  GAD
Sbjct: 165 RWRPGAVTPSVIVLAPTRELAIQIHDECAKFCPAAGCRSAVLYGGAAKGDQLRALRSGAD 224

Query: 125 VLICTPGRILDHFN-----RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           V++ TPGR+ D           +       +V+DEADRMLDMGF P I+ I  L P  RQ
Sbjct: 225 VVVATPGRLNDFLEPPPGFTAPVSAVKAAYVVLDEADRMLDMGFEPQIKKIFKLCPSARQ 284

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNT-----PSSTAETIEHCFVATYAQYSKKCAL 234
           T++F+AT    +QK+++ F   P  I++ +      ++ + T     V    ++ +  A+
Sbjct: 285 TVMFTATWPKGVQKIADAFTTKPIHIQIGSGGDKLTANKSITQTVEVVEEEEKFDRCVAI 344

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC-AIHGNIDQRSRMKILSNFKE 293
           L++ L   +T    I+F   K+    L   L++ GFS   +IHG+ DQ  R  +L NF+ 
Sbjct: 345 LKKELGKNETC---IMFAGTKRRCDFLDRRLKQVGFSSAGSIHGDKDQYEREMVLDNFRR 401

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+D+AARGLDIP V  V  +D P + E+Y+HRIGRTGRAG+ GKAFT   K++
Sbjct: 402 GRGNILVATDVAARGLDIPGVAAVIVYDFPLQVEDYVHRIGRTGRAGKDGKAFTFFTKDN 461


>gi|301779842|ref|XP_002925338.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Ailuropoda
           melanoleuca]
          Length = 863

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 133/359 (37%), Positives = 199/359 (55%), Gaps = 10/359 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F++PM   
Sbjct: 85  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFER 144

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K R+     R L+L PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 145 L-KTRSAQTGARALVLSPTRELALQTMKFTKELGKFTGLRTALILGGDKMEDQFAALHEN 203

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I S +P   QT+L
Sbjct: 204 PDIIIATPGRLVHVAVEMNLRLQSVEYVVFDEADRLFEMGFAEQLQEIISRLPGGHQTVL 263

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS- 241
           FSAT+   L + +   L  P  I ++  +   E ++  F     +   K A+L  LL++ 
Sbjct: 264 FSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFF--LVREDTKAAVLLHLLRTV 321

Query: 242 ---QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              QD     ++F   K +   L   L  QG S   I+  +DQ +R   L+ F  G    
Sbjct: 322 VRPQDQT---VVFVATKHHAEYLSELLTTQGVSCTHIYSALDQTARKINLAKFTHGKCST 378

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ +DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA +++ ++
Sbjct: 379 LIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYL 437


>gi|190573992|ref|YP_001971837.1| ATP-dependent RNA helicase DbpA [Stenotrophomonas maltophilia
           K279a]
 gi|190011914|emb|CAQ45535.1| putative ATP-dependent RNA helicase [Stenotrophomonas maltophilia
           K279a]
          Length = 458

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 146/382 (38%), Positives = 221/382 (57%), Gaps = 11/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ L LSP +   +   GY   TP+Q +++P +L   DV   A TG+GKTA+F L +L 
Sbjct: 3   DFSTLPLSPALQPGLDALGYTTLTPVQAQSLPAILNGRDVIAQAPTGSGKTAAFGLGLLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++    RV+    L+L PTRELA QV     K      NL + LL+GG+P   Q   LE
Sbjct: 63  SIDPSLIRVQ---ALVLCPTRELADQVGKQIRKLATGIPNLKLLLLVGGVPLGPQLASLE 119

Query: 121 RGAD--VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            G D  V++ TPGR+ +   +  L +  +  LV+DEADRMLDMGF   I+ I       R
Sbjct: 120 -GHDPHVVVGTPGRVQELARKRALNLGAVRTLVLDEADRMLDMGFEEPIREIAGRTHKDR 178

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+LLFSAT  D ++ ++ + L++   + V   +  A  I H F      + +K AL   L
Sbjct: 179 QSLLFSATFPDSIRAMARDLLRDAVEVTVEG-ADQAPAIRHLFCEVEPAHRQK-ALAGLL 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+   T ++ ++FCN +K+V  + +SL++ GFS  A+HG+++QR R ++L      +  +
Sbjct: 237 LKY--TPESAVVFCNTRKDVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRSCNV 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASD+AARGLD+ D+  V N+++P   E+Y HR+GRTGRAG  G A +LVA  +    +
Sbjct: 295 LVASDVAARGLDVEDLAAVINYELPTDVESYQHRVGRTGRAGASGLAISLVAGREKTRAE 354

Query: 359 AIEKLIEKKVDWLNGDLSSLNP 380
           AIE  + + +DW    L++  P
Sbjct: 355 AIEAQMGQPLDWQKTPLATSRP 376


>gi|168042093|ref|XP_001773524.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675226|gb|EDQ61724.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 619

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 130/369 (35%), Positives = 213/369 (57%), Gaps = 12/369 (3%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LG+S  +V A+   G     PIQ   +   ++  D+   A+TGTGKT +F +P++  +  
Sbjct: 9   LGVSEDIVEALAKRGITHLFPIQRAVLEPAMKGQDLIARAKTGTGKTLAFGIPIIRHIVD 68

Query: 66  GRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           G A     + R PR L+L PTRELA QV   F +      L+   + GG+P   Q ++LE
Sbjct: 69  GNAENAPRQGRSPRALVLAPTRELAKQVEREFMESAPM--LSTVCVYGGVPISMQQRQLE 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+ + TPGRI+D  +RG L + ++  LV+DEAD+ML +GF   ++ I   +P  RQ+
Sbjct: 127 RGVDIAVGTPGRIIDLIDRGSLKLKDVHFLVLDEADQMLAVGFEEDVERILQQLPKQRQS 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +LFSATM   ++++S  +L  P  I++  ++    A+ I++  +   A  S K ++L  L
Sbjct: 187 MLFSATMPKWVKELSRKYLNKPLTIDLVGDSDEKLADGIKNLAIQLPA--SAKRSILSDL 244

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +         I+F   K++  ++  ++     S  A+HG+I Q  R K LS F++G I +
Sbjct: 245 ITVHGKGGKTIVFTQTKRDADDVAMAMGNL-VSCGALHGDISQVQREKTLSAFRDGKIAV 303

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+P+V  V ++++PN +E ++HR GRTGRAGR G    +   + ++ + 
Sbjct: 304 LVATDVAARGLDVPNVDLVIHYEIPNDSETFVHRTGRTGRAGRSGTNILMFTSQQVRTMR 363

Query: 359 AIEKLIEKK 367
            IE  ++ K
Sbjct: 364 TIENNVKCK 372


>gi|92081528|dbj|BAE93311.1| zinc finger protein [Ciona intestinalis]
          Length = 556

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 127/352 (36%), Positives = 202/352 (57%), Gaps = 12/352 (3%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKG 66
           L   ++  V  AGY +PTP+Q  +IP++    D+   AQTG+GKTA+F+LP+LT ++E G
Sbjct: 116 LQETILVNVQKAGYDRPTPVQKYSIPIINADRDLMACAQTGSGKTAAFLLPVLTKLVESG 175

Query: 67  R-----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                 +  + P+ +I+ PTREL  Q+     K+ ++  +   ++ GG     Q + +++
Sbjct: 176 VKSSEFSEKKTPQAIIIGPTRELVNQIFLEARKFSRSTIIHPVVVYGGTSVGYQIRAVQK 235

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----T 177
           G DVLI TPGR++D  NRG + + N+  +++DEADRMLDMGF   I+ + SL        
Sbjct: 236 GCDVLIATPGRLMDFINRGLIGLENVRFIILDEADRMLDMGFESEIRKLVSLPGMPQKNN 295

Query: 178 RQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           R TL+FSAT  DE+QK++ +FL ++   + V         +    ++   +  K+  LL+
Sbjct: 296 RHTLMFSATFPDEIQKLAHDFLREDFLFLTVGRVGGACSDVTQTVISVEWK-DKRSKLLE 354

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +    +T    ++F   K+    L   L ++ F   +IHG+  Q+ R + L +FK    
Sbjct: 355 LIADVNETKSRTLVFVETKRGADFLACVLCQEDFPTTSIHGDRLQQDREQALRDFKLAVC 414

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            ++VA+ +AARGLDIP V HV N+D+P   + Y+HRIGRTGR G  G+A T 
Sbjct: 415 PILVATSVAARGLDIPKVEHVINYDMPREIDEYVHRIGRTGRCGNLGRATTF 466


>gi|215254416|gb|ACJ64200.1| vasa [Halocynthia roretzi]
          Length = 691

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 128/345 (37%), Positives = 200/345 (57%), Gaps = 12/345 (3%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR------ARVRM 72
           A Y KPTP+Q  +IP+V    D+   AQTG+GKTA+F+LP+L  + K        +  ++
Sbjct: 256 ANYKKPTPVQKYSIPIVNSDRDLMACAQTGSGKTAAFLLPVLRGMVKNGITNDMFSEKQL 315

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
           P+ +++ PTREL  Q+     K+ KN  +   +  GG     Q  +L RG ++LI TPGR
Sbjct: 316 PQAVVVGPTRELVYQIFLETRKFSKNTIIKPIVAYGGTSVAHQLSQLSRGCNILIATPGR 375

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--VP--FTRQTLLFSATMT 188
           +LD  NRGK+ + N++ L++DEADRMLDMGF P I+ + +   +P  + R TL+FSAT  
Sbjct: 376 LLDFINRGKVGLANLQYLILDEADRMLDMGFEPEIRRLVAAPDIPDKYNRHTLMFSATFP 435

Query: 189 DELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
           + +Q+++  FL++    + V         +    V       K+  L+Q +   ++T   
Sbjct: 436 NNIQELAHEFLRDDFLFLTVGRVGGACSDVTQT-VLQVDTNDKREKLMQLIADVEETKAR 494

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            ++F + K+N   L   L ++G    +IHG+  QR R + L +FK G   +++A+ +AAR
Sbjct: 495 TLVFVDTKRNADFLACFLSQEGCPTTSIHGDRLQREREQALYDFKSGVCPILIATSVAAR 554

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           GLDIP V HV NFD+P+  + Y+HRIGRTGR G  G+A +    +
Sbjct: 555 GLDIPKVEHVINFDLPSEIDEYVHRIGRTGRCGNLGQATSFYCDD 599


>gi|153824721|ref|ZP_01977388.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-2]
 gi|149741677|gb|EDM55706.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-2]
          Length = 406

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 132/366 (36%), Positives = 200/366 (54%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A L     +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 1   MSFSSLALSADLIQA-LPKAITEPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV+D     G    L    L GG+    Q   L 
Sbjct: 60  ERLKTSPEQ----QALVLVPTRELAMQVSDVLTHVGTPLGLNTLCLCGGVDKAEQQNALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 116 ENPNILVATTGRLFDLTQSG-LSLNRVTTLVLDEADRLLDMGFWPQVQALASQTASVRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 175 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 233

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK GT Q+++
Sbjct: 234 HQ--WPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQTQREAALAEFKNGTTQVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAI 351

Query: 361 EKLIEK 366
             L ++
Sbjct: 352 RTLTQR 357


>gi|254572872|ref|XP_002493545.1| ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase [Pichia
           pastoris GS115]
 gi|238033344|emb|CAY71366.1| ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase [Pichia
           pastoris GS115]
 gi|328354630|emb|CCA41027.1| ATP-dependent RNA helicase [Pichia pastoris CBS 7435]
          Length = 606

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 133/366 (36%), Positives = 203/366 (55%), Gaps = 27/366 (7%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML----------------TILE 64
           + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L                T+  
Sbjct: 158 FTKPTPVQKYSVPIVSNHRDLMACAQTGSGKTGGFLFPVLSECFQTGPAPIEVESETVFR 217

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           K RA    P  L++ PTREL +Q+ D  +K+     +   ++ GG     Q + L  G D
Sbjct: 218 KHRA---YPTILVMAPTRELVSQIYDEAKKFAYRSWMRPCVVYGGANIRDQMEDLILGCD 274

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQT 180
           +L+ TPGR+ D   RGK+ +  I+ L++DEADRMLDMGF P I++I           R T
Sbjct: 275 LLVATPGRLSDLLERGKISLAKIKYLILDEADRMLDMGFEPQIRHIVQGCDMPSVNERHT 334

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT   ++Q ++++FL++   + V    ST+E I    ++   +  +K ++L  +L 
Sbjct: 335 LMFSATFPRDIQLLAKDFLKDYIFLSVGRVGSTSENITQRVLSV--EDDEKKSVLLDILS 392

Query: 241 SQDTMKNGI--IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           S D +K G+  IF   K+    L H L  + F   +IHG+  Q+ R   L  FK G   +
Sbjct: 393 SSDDIKEGLTLIFVETKRMADTLSHFLVTRNFPATSIHGDRTQQEREHALHLFKSGAAPI 452

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G A   V + +   I 
Sbjct: 453 LVATAVAARGLDIPNVTHVVNYDLPADIDDYVHRIGRTGRAGNVGIATAFVNRGNKNLIK 512

Query: 359 AIEKLI 364
            + +L+
Sbjct: 513 GLIELL 518


>gi|225464928|ref|XP_002275011.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 412

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 130/381 (34%), Positives = 205/381 (53%), Gaps = 11/381 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  +G+   ++  +   G+ KP+ IQ + +  ++Q  DV   AQ+GTGKT+   L + 
Sbjct: 39  MSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVLPIIQGRDVIAQAQSGTGKTSMIALTVC 98

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++     V+    LIL PTRELA+Q        G   N+     IGG       +KLE
Sbjct: 99  QMVDTSNREVQ---ALILSPTRELASQTEKVILAIGDFINIQAHACIGGKSVGEDIRKLE 155

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  ++  TPGR+ D   R  L    I++LV+DE+D ML  GF   I ++   +P   Q 
Sbjct: 156 YGVHIVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQV 215

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQ 237
           +L SAT+ +E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   
Sbjct: 216 VLISATLPNEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT 275

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L     T+   +IFCN K+ V  L   +    F+V ++HG++ Q+ R  I++ F+ GT +
Sbjct: 276 L-----TITQAVIFCNTKRKVDWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFRSGTTR 330

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +
Sbjct: 331 VLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKTDDIKIL 390

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             IE+    ++D +  +++ L
Sbjct: 391 RDIEQYYSTQIDEMPMNVADL 411


>gi|156083018|ref|XP_001608993.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
           containing protein [Babesia bovis T2Bo]
 gi|154796243|gb|EDO05425.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
           containing protein [Babesia bovis]
          Length = 783

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 139/372 (37%), Positives = 213/372 (57%), Gaps = 10/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAG--YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           F  LGL  + +C  L+    Y +P+ IQ +TIP VLQ  DV  IA+TG+GKTA+++ P++
Sbjct: 24  FGLLGLD-RTLCYALEHKLRYKQPSTIQRRTIPAVLQGRDVVCIARTGSGKTAAYLAPVV 82

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKY----GKNYNLTVALLIGGIPFEAQN 116
            +LE G +R    R LIL PTRELA QV+   +K+     ++  L  A LIGG   E Q 
Sbjct: 83  QLLE-GHSRTVGVRCLILLPTRELALQVSSVLKKFIAFTKRDDALRSATLIGGESVEGQF 141

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L    D+++ TPGR+  H     + +  +   VIDEAD++ +MGF+P +  I S +P 
Sbjct: 142 GALTFNPDLVVATPGRLSQHIAEKSIDLTLVTHFVIDEADKLFEMGFMPDVYRILSRLPE 201

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+L SAT+  EL +     L+NP   +V+      E +E  F+  Y++   K A L 
Sbjct: 202 KRQTMLVSATLPSELTEFVNFGLRNPVIAQVDKDMQINEQLELRFI--YSRTEDKVATLC 259

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL++ +  +  I+F + K +V      L   G +V A++G++D  +R   +  FK    
Sbjct: 260 RLLRNSNDTERTIVFVSTKHHVEFFRALLAATGITVSAVYGSMDMTARSHQMGLFKSLKT 319

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++V +DLAARGLD+P V  V N+D P+ ++ +IHR+GRT RAGR G A ++V   D  +
Sbjct: 320 RVLVVTDLAARGLDLPLVDCVINYDFPHSSKLFIHRVGRTARAGRQGLAISIVTMYDFAY 379

Query: 357 IDAIEKLIEKKV 368
              I   I +K+
Sbjct: 380 AFEILTAIGRKM 391


>gi|50291719|ref|XP_448292.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74690788|sp|Q6FNA2|DBP10_CANGA RecName: Full=ATP-dependent RNA helicase DBP10
 gi|49527604|emb|CAG61253.1| unnamed protein product [Candida glabrata]
          Length = 969

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 134/416 (32%), Positives = 222/416 (53%), Gaps = 52/416 (12%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  GLS  ++  +   G+ +PTPIQ KTIPL+LQ  D+ G+A+TG+GKTA+FVLPM+  
Sbjct: 117 FASFGLSKLILVNISKRGFRQPTPIQRKTIPLILQNRDIVGMARTGSGKTAAFVLPMIEK 176

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   +++   R +IL P+RELA Q    F+++ +  +L   LL GG   E Q   +   
Sbjct: 177 LKTHSSKI-GARAIILSPSRELAMQTHSVFKEFSRGTHLRSVLLTGGDSLEDQFGMMMTN 235

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV+I TPGR L       L + ++E  V DEADR+ +MGF   +  + + +P +RQTLL
Sbjct: 236 PDVIIATPGRFLHLKVEMNLDLKSVEYAVFDEADRLFEMGFQEQLNELLAALPSSRQTLL 295

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL------- 235
           FSAT+   L   ++  L NP  + ++  S  ++ +E  F++T     ++  LL       
Sbjct: 296 FSATLPTSLVDFAKAGLVNPVLVRLDAESKISDNLEMLFLSTKND-EREANLLYILQEVI 354

Query: 236 -------QQLLQSQD------------------------------------TMKNGIIFC 252
                  +Q+ Q  D                                    + K  ++F 
Sbjct: 355 KLPLATPEQIKQLNDNKADDSDESAEEDEDKKRRKRKSFNRKAMPKANELPSEKATVVFV 414

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             + +V  L + L+  G+ V  I+G +DQ +R   L NF+ G   ++V +D+AARG+DIP
Sbjct: 415 PTRHHVEYLSNLLKDCGYLVSYIYGALDQHARKSQLYNFRIGLTSILVVTDVAARGVDIP 474

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            + +V N+ +P  ++ +IHR+GRT RAG  G A+++V++ ++ ++  +E  + +K+
Sbjct: 475 MLANVVNYSLPASSKIFIHRVGRTARAGNRGWAYSIVSENELPYLLDLELFLGRKI 530


>gi|320590111|gb|EFX02556.1| dead deah box RNA helicase [Grosmannia clavigera kw1407]
          Length = 1178

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 211/370 (57%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           ++  GL+  ++  +   GY KPT IQ++ +P+++   DV G+A+TG+GKT +F++PM   
Sbjct: 540 WSHCGLTRPMLEVIEQLGYDKPTAIQMQALPVIMSGRDVIGVAKTGSGKTMAFLVPMFRH 599

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I+++ R R   P  LIL PTRELA Q+  + + + K   L      GG P + Q  +L+R
Sbjct: 600 IMDQERVRDDGPIGLILTPTRELAVQIHRDCKPFAKKLGLRAVCAYGGPPIKDQIAELKR 659

Query: 122 GADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           GA++++ T GR++D    N+G+++ +     +V+DEADRM DMGF P +  I + +   R
Sbjct: 660 GAEIVVATTGRMIDLLAANQGRVVSLRRTTYIVLDEADRMFDMGFEPQVMKIFANIRPDR 719

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA--TYAQYSKKCALLQ 236
           QTLLFSATM   +  + +  L +P  I V   S  A  I           ++ +   LL 
Sbjct: 720 QTLLFSATMPRIIDALVKKVLHSPVEITVGGKSVVAPEITQMVEVRDEKDKFLRLLELLG 779

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L    D ++  +IF  +++    L   L ++G++  ++HG  DQ  R   +S+FK+G  
Sbjct: 780 ELYMDDDDVR-ALIFVERQEKADELLRELLRKGYACMSLHGGKDQSDRDSTISDFKKGVC 838

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T V +E    
Sbjct: 839 PVLVATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFVTEEQENC 898

Query: 357 IDAIEKLIEK 366
              I K +E+
Sbjct: 899 APGIAKALEQ 908


>gi|326473025|gb|EGD97034.1| ATP-dependent RNA helicase DBP10 [Trichophyton tonsurans CBS
           112818]
          Length = 941

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 136/396 (34%), Positives = 210/396 (53%), Gaps = 43/396 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+P ++ A+   G+  PTPIQ KTIPL+L   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 95  FQAMGLNPNLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 154

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 155 LRNHSTKV-GARGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMASN 213

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I   V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 214 PDIIIATPGRFLHLKVEMNLDLSSIRYAVFDEADRLFEMGFAAQLTEILHALPTSRQTLL 273

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
           FSAT+   L + +   LQ P  I ++  S  +  ++  F  T     K+ ALL  L    
Sbjct: 274 FSATLPKSLVEFARAGLQEPTLIRLDADSKISPDLQSAFF-TVKSADKEGALLHILHDII 332

Query: 239 --------------LQSQD-----------------------TMKNGIIFCNQKKNVVNL 261
                          ++Q+                       T  + I+F   K +V  +
Sbjct: 333 KIPTGETEAGKLAKKEAQEGKQGTSKKRKRADMKGPGAHGTPTEHSTIVFVATKHHVEYI 392

Query: 262 CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321
            + L   GF+V   +G+++Q +R   + NF+ G   ++V +D+AARG+DIP + +V N+D
Sbjct: 393 ANLLRHSGFAVSYAYGSLNQTARKIQVQNFRAGISNILVVTDVAARGIDIPVLANVINYD 452

Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            P++ + YIHR+GRT RAG+ G +++LV   D  ++
Sbjct: 453 FPSQPKIYIHRVGRTARAGQKGWSYSLVRDSDAPYL 488


>gi|302506487|ref|XP_003015200.1| hypothetical protein ARB_06323 [Arthroderma benhamiae CBS 112371]
 gi|291178772|gb|EFE34560.1| hypothetical protein ARB_06323 [Arthroderma benhamiae CBS 112371]
          Length = 940

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 136/396 (34%), Positives = 210/396 (53%), Gaps = 43/396 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+P ++ A+   G+  PTPIQ KTIPL+L   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 94  FQAMGLNPTLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 153

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 154 LRNHSTKV-GARGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMASN 212

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I   V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 213 PDIIIATPGRFLHLKVEMNLDLSSIRYAVFDEADRLFEMGFAAQLTEILHALPTSRQTLL 272

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
           FSAT+   L + +   LQ P  I ++  S  +  ++  F  T     K+ ALL  L    
Sbjct: 273 FSATLPKSLVEFARAGLQEPTLIRLDADSKISPDLQSAFF-TVKSADKEGALLHILHDLI 331

Query: 239 --------------LQSQD-----------------------TMKNGIIFCNQKKNVVNL 261
                          ++Q+                       T  + I+F   K +V  +
Sbjct: 332 KIPTGETEAGKLAKKEAQEGKQGTSKKRKRVDMKGPGTHGTPTEHSTIVFVATKHHVEYI 391

Query: 262 CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321
            + L   GF+V   +G+++Q +R   + NF+ G   ++V +D+AARG+DIP + +V N+D
Sbjct: 392 ANLLRHSGFAVSYAYGSLNQTARKIQVQNFRAGISNILVVTDVAARGIDIPVLANVINYD 451

Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            P++ + YIHR+GRT RAG+ G +++LV   D  ++
Sbjct: 452 FPSQPKIYIHRVGRTARAGQKGWSYSLVRDSDAPYL 487


>gi|167860961|gb|ACA05234.1| vasa-like protein [Apostichopus japonicus]
          Length = 530

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 131/360 (36%), Positives = 202/360 (56%), Gaps = 12/360 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +  L   +   V  A Y KPTP+Q   IP+V    D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 72  FGEADLYDSIGENVRRAKYDKPTPVQKYGIPIVSAGRDLMACAQTGSGKTAAFLLPILSG 131

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +L  G     +     P+ +++ PTRELA Q+ D   K+     +   ++ GG   + Q 
Sbjct: 132 LLRDGLQSSALSGQQCPQCIVVSPTRELAIQIFDEARKFSYKTMIKCVVIYGGTKVQHQT 191

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS--LV 174
             ++RG +VL+ TPGR+L   N G + +  ++ LV+DEADRMLDMGF P ++ + +   +
Sbjct: 192 SMVDRGCNVLVATPGRLLHFINSGMISVEKVKYLVLDEADRMLDMGFGPDMEKLVNNPAM 251

Query: 175 P--FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           P    R TL+FSAT  +E+Q+ +  +L N   + V         +    V    Q +KK 
Sbjct: 252 PKKGERHTLMFSATFPNEVQERAAEYLDNYLFLTVGRVGGANSDVRQVVVEV-PQAAKKD 310

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L++ +LQSQ      ++F   K+    L   L + GF   +IHG+ +QR R + L++FK
Sbjct: 311 KLIE-ILQSQPENDRTLVFTETKRGADFLASYLSQSGFPTTSIHGDREQREREEALNDFK 369

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                ++VA+ +A+RGLDIP V HV NFD+P+  ++Y+HRIGRTGR G  G + +    E
Sbjct: 370 RNRASVLVATSVASRGLDIPAVKHVVNFDLPSEIDDYVHRIGRTGRCGNTGLSTSFYNPE 429


>gi|328766962|gb|EGF77014.1| hypothetical protein BATDEDRAFT_645 [Batrachochytrium dendrobatidis
           JAM81]
          Length = 589

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 128/358 (35%), Positives = 205/358 (57%), Gaps = 8/358 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +   G+ P V+  +     Y +P+ IQ + IP ++   DV GIA+TG+GKT +F+LPM  
Sbjct: 62  WTHFGMPPGVLEVIRRVLKYDRPSSIQSQAIPAIVGGRDVIGIAKTGSGKTIAFLLPMFR 121

Query: 62  ILEKGRARVRMPRT--LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++  R    M  +  LI+ PTRELA Q+    + + K  NL      GG P + Q  +L
Sbjct: 122 HIKDQRPIQAMEGSIALIMTPTRELAVQIHRECKHFTKILNLRAVCCYGGSPIKDQIAEL 181

Query: 120 ERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA+++ICTPGR++D    N G++  +  +  LV+DEADRM DMGF P +  + + +  
Sbjct: 182 KRGAEIIICTPGRMIDLLCSNAGRVTNLRRVTYLVLDEADRMFDMGFEPQVMKMVNNIRP 241

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT   +++ ++   L+ P  I V   S  A  +       +   +K   LL+
Sbjct: 242 DRQTVLFSATFPRKMEALARKILRRPLEITVGGRSVVASDVTQIVEVHHDDETKFLRLLE 301

Query: 237 QLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            L  S  T  +   +IF ++++   ++ + L ++G+   ++HG  DQ  R   LS+FK G
Sbjct: 302 ILGLSSATDPDAKILIFVDRQEAADSMLNKLLRRGYPCQSLHGGKDQADRDSTLSDFKTG 361

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +  +M+A+ +AARGLD+  +  V N++ PN  E+Y+HR+GRTGRAG  G A+T +  E
Sbjct: 362 STNIMIATSVAARGLDVKQLKIVVNYECPNHMEDYVHRVGRTGRAGNKGTAYTFILPE 419


>gi|160380704|sp|A7ESL7|DBP10_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp10
          Length = 920

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 134/389 (34%), Positives = 208/389 (53%), Gaps = 37/389 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPLVL   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 90  FQAMGLNSHLLKAISRKGFNVPTPIQRKTIPLVLDNQDVVGMARTGSGKTAAFVIPMIEK 149

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     RV   R LI+ P+RELA Q     +++G+  +L   LL+GG   E Q   +   
Sbjct: 150 LRAHSVRV-GARALIMSPSRELALQTLKVVKEFGRGTDLKCVLLVGGDSLEEQFGFMAAN 208

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++++ +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 209 PDIVIATPGRFLHLKVEMSLDLSSMKYVVFDEADRLFEMGFAAQLGEILHALPISRQTLL 268

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   LQ P  + ++  S  +  ++  F +      K+ ALL  +LQ  
Sbjct: 269 FSATLPKSLVEFARAGLQEPSLVRLDAESKVSPDLQSAFFSVKGA-EKEGALL-HILQDL 326

Query: 243 DTMKNG----------------------------------IIFCNQKKNVVNLCHSLEKQ 268
             M  G                                  IIF   K +V  L   L   
Sbjct: 327 VKMPTGLPENALNATDNFSKKRKRGPDGPTKKLKPTEHSTIIFAATKHHVDYLASLLRMS 386

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           GF+V   +G++DQ +R   + +F+ G   ++V +D+AARG+DIP + +V N+D P + + 
Sbjct: 387 GFAVSHAYGSLDQTARNIQVEDFRTGKSNILVVTDVAARGIDIPVLANVINYDFPPQPKV 446

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++HR+GRT RAG+ G +++LV   D  ++
Sbjct: 447 FVHRVGRTARAGQRGWSYSLVRDTDAPYL 475


>gi|70992295|ref|XP_750996.1| ATP dependent RNA helicase (Dbp10) [Aspergillus fumigatus Af293]
 gi|74697392|sp|Q8NJM2|DBP10_ASPFU RecName: Full=ATP-dependent RNA helicase dbp10
 gi|21627815|emb|CAD37147.1| putative ATP-dependent RNA helicase [Aspergillus fumigatus]
 gi|66848629|gb|EAL88958.1| ATP dependent RNA helicase (Dbp10), putative [Aspergillus fumigatus
           Af293]
 gi|159124566|gb|EDP49684.1| ATP dependent RNA helicase (Dbp10), putative [Aspergillus fumigatus
           A1163]
          Length = 869

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 133/397 (33%), Positives = 213/397 (53%), Gaps = 44/397 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  ++ A+   G+  PTPIQ KTIP+++   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 72  FQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIPMIEK 131

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +V   R L+L P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 132 LKSHSTKV-GARGLVLSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFAMIAGN 190

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P  RQTLL
Sbjct: 191 PDIIIATPGRFLHLKVEMNLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPANRQTLL 250

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL------- 235
           FSAT+   L + +   LQ P  + ++T S  +  +++ F +  +   K+ ALL       
Sbjct: 251 FSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQNAFFSVKSS-EKEGALLYILHEVI 309

Query: 236 ---------QQLLQSQD--------------------------TMKNGIIFCNQKKNVVN 260
                     Q  + +D                          T  + I+F   K +V  
Sbjct: 310 KMPTGPTEVSQQRKEEDASAKNLKNKKRKRAEMEKAVNTRESPTKHSTIVFAATKHHVDY 369

Query: 261 LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNF 320
           L   L + GF+V  ++G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+
Sbjct: 370 LYSLLCEAGFAVSYVYGSLDQTARKIQVQNFRTGMTNILVVTDVAARGIDIPILANVINY 429

Query: 321 DVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           D P++ + ++HR+GRT RAGR G +++LV   D  ++
Sbjct: 430 DFPSQPKIFVHRVGRTARAGRKGWSYSLVRDADAPYL 466


>gi|281343478|gb|EFB19062.1| hypothetical protein PANDA_014817 [Ailuropoda melanoleuca]
          Length = 819

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 133/359 (37%), Positives = 199/359 (55%), Gaps = 10/359 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F++PM   
Sbjct: 41  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFER 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K R+     R L+L PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 101 L-KTRSAQTGARALVLSPTRELALQTMKFTKELGKFTGLRTALILGGDKMEDQFAALHEN 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I S +P   QT+L
Sbjct: 160 PDIIIATPGRLVHVAVEMNLRLQSVEYVVFDEADRLFEMGFAEQLQEIISRLPGGHQTVL 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS- 241
           FSAT+   L + +   L  P  I ++  +   E ++  F     +   K A+L  LL++ 
Sbjct: 220 FSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFF--LVREDTKAAVLLHLLRTV 277

Query: 242 ---QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              QD     ++F   K +   L   L  QG S   I+  +DQ +R   L+ F  G    
Sbjct: 278 VRPQDQT---VVFVATKHHAEYLSELLTTQGVSCTHIYSALDQTARKINLAKFTHGKCST 334

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ +DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA +++ ++
Sbjct: 335 LIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYL 393


>gi|62740160|gb|AAH94142.1| LOC495097 protein [Xenopus laevis]
          Length = 693

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 129/355 (36%), Positives = 200/355 (56%), Gaps = 2/355 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   V+  GY  PTPIQ K +P++L   DV  +A+TG+GKTA F++PM   
Sbjct: 77  FQSMGLSYPVYKGVMKKGYKVPTPIQRKVVPVILDGKDVVAMARTGSGKTACFLIPMFEK 136

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+  + R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 137 LKAHSAQTGV-RGLILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 195

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I S +P TRQTLL
Sbjct: 196 PDIIIATPGRLMHVAIEMNLKLRSVEYVVFDEADRLFEMGFAEQLQEIISRLPETRQTLL 255

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +  ++ ++  F     +  K   LL  L    
Sbjct: 256 FSATLPKMLLEFARAGLTEPVLIRLDVDTKLSDQLKLSFFNVRVE-DKPAVLLHLLRCVV 314

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  +IF   K +   L   L+ QG     I+ ++DQ +R   L  F  G ++ ++ +
Sbjct: 315 KPQEQTVIFVATKHHAEYLRELLDMQGIPCSHIYSSLDQTARKINLGLFLHGKVRALLVT 374

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           D+AARG+DIP + +V N++ P +A+ ++HR+GR  RAGR G A++ +A ++I ++
Sbjct: 375 DVAARGIDIPMLDNVINYNFPPKAKLFLHRVGRVARAGRSGTAYSFIAPDEIPYV 429


>gi|301765214|ref|XP_002918023.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 2
           [Ailuropoda melanoleuca]
          Length = 406

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 201/368 (54%), Gaps = 58/368 (15%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 26  FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRL---FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++  ++   +++  K         
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKSK--------- 252

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                                                      R+  L+ FK     +++
Sbjct: 253 -------------------------------------------RLGSLNKFKAKARSILL 269

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 270 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 329

Query: 361 EKLIEKKV 368
           E LI KK+
Sbjct: 330 EHLIGKKL 337


>gi|289811986|ref|ZP_06542615.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 293

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 125/296 (42%), Positives = 179/296 (60%), Gaps = 8/296 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              I  +  A+ R P R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E + +H     +    +K  LL 
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           Q++  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK
Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFK 292


>gi|242008404|ref|XP_002424996.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212508625|gb|EEB12258.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 684

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 141/394 (35%), Positives = 205/394 (52%), Gaps = 47/394 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+++ ++  +   ++ A Y KPTP+Q   IP+++ R D+   AQTG+GKTA+F++P+L  
Sbjct: 243 FSEIKMTEIISNNIMLARYDKPTPVQKYAIPIIMSRRDLMACAQTGSGKTAAFLVPILNQ 302

Query: 62  ILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           + ++G         R + P  L+L PTRELA Q+ D   K+     L   ++ GG   + 
Sbjct: 303 MYQRGPQNNRPYSHRKQYPMGLVLAPTRELATQIYDEARKFSYRSRLRPCVVYGGSYLQD 362

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL- 173
           Q ++LE+G  +L+ TPGR+ D  +R K+ + N + LV+DEADRMLDMGF P I+ I    
Sbjct: 363 QFRELEKGCHLLVATPGRLADMLDRDKIGLENCKFLVLDEADRMLDMGFEPQIRRIVEKD 422

Query: 174 VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +P T  RQTL+FSAT  D +Q    +FL +                              
Sbjct: 423 MPRTGERQTLMFSATFPDVIQADKRSFLLD------------------------------ 452

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL        T    ++F   +K    L   L  QG+ V  IHG   QR R   L  F
Sbjct: 453 --LLNATRYKNGTESLTLVFVETRKGADCLEEYLHYQGYPVSCIHGERSQREREDALRRF 510

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G   ++VA+ +AARGLDI  V HV NFD+P+  E Y+HRIGRTGR G  G A +   +
Sbjct: 511 RSGETPILVATAVAARGLDISHVTHVINFDLPSDIEEYVHRIGRTGRMGNLGVATSFFNE 570

Query: 352 EDIKHI-DAIEKLIEKKVD---WLNGDLSSLNPP 381
           ++   + D +E L E   D   WL    S +N P
Sbjct: 571 KNRNIVRDLVELLTETNQDLPKWLEAFASDMNAP 604


>gi|325262198|ref|ZP_08128936.1| ATP-dependent RNA helicase DbpA [Clostridium sp. D5]
 gi|324033652|gb|EGB94929.1| ATP-dependent RNA helicase DbpA [Clostridium sp. D5]
          Length = 481

 Score =  229 bits (584), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 131/363 (36%), Positives = 207/363 (57%), Gaps = 10/363 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    LS +++ ++   GY +PT IQ + I  +L   +V   A TG+GKTA+F +P   
Sbjct: 4   EFYKYELSKEILESLNGLGYKEPTSIQQEVILPMLAGKNVVVKAPTGSGKTAAFAIP--- 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I E        P+ LILEPTRELA QV++     G+   L V  L GG P + Q + L +
Sbjct: 61  ICENICWEENAPQALILEPTRELAVQVSEEMFYIGRKKRLKVPALFGGFPIDKQIQTLRQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + ++  TPGRI+DH  R  L +  +  LVIDEAD MLDMGFI  ++ I S+VP   +  
Sbjct: 121 KSHIVTGTPGRIMDHLGRESLNLEKVRWLVIDEADLMLDMGFIDEVKKILSMVPTDCRIS 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQYSKKCALLQQLL 239
           LFSAT+  E+Q++ + F+ +   + +   S+T E +       Y   Q +K    L+ L+
Sbjct: 181 LFSATLKPEIQELVDEFIPD---MTIVMQSATNEQVAAITEKLYFTDQENKYDTFLEILI 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  ++ +IFC  ++    L   L ++      +HG ++QR R+K +  F+ G  + +
Sbjct: 238 --NENPQSCMIFCGTREMTNVLFQKLRRRRIFCGMLHGEMEQRERLKTVDAFRRGCFRFL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D   + HV N+D P++ E Y+HRIGRTGR G+ G A +LV +ED + +  
Sbjct: 296 IATDVAARGIDFEQITHVVNYDFPSKKETYVHRIGRTGRNGKCGTAISLVTEEDKRMLRQ 355

Query: 360 IEK 362
           +E+
Sbjct: 356 VEE 358


>gi|291392612|ref|XP_002712706.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2
           [Oryctolagus cuniculus]
          Length = 406

 Score =  229 bits (584), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 201/368 (54%), Gaps = 58/368 (15%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 26  FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVHCAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++  ++   +++  K         
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKSK--------- 252

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                                                      R+  L+ FK     +++
Sbjct: 253 -------------------------------------------RLGSLNKFKAKARSILL 269

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 270 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 329

Query: 361 EKLIEKKV 368
           E LI KK+
Sbjct: 330 EHLIGKKL 337


>gi|88803174|ref|ZP_01118700.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Polaribacter irgensii 23-P]
 gi|88780740|gb|EAR11919.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Polaribacter irgensii 23-P]
          Length = 373

 Score =  229 bits (584), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 130/374 (34%), Positives = 221/374 (59%), Gaps = 19/374 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F+ LG++P  + ++ + G   PT IQ +TIP++L+ + D  G+AQTGTGKTA+F LP+L 
Sbjct: 4   FSALGITPAYIKSIQELGISTPTEIQEQTIPILLKSKTDFIGLAQTGTGKTAAFGLPILH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN---LTVALLIGGIPFEAQNKK 118
            ++     ++   TL+L PTREL  Q+     K+ K YN   + +  + GG   + Q   
Sbjct: 64  HIDTSSEHIQ---TLVLSPTRELVQQIKKQLFKFTK-YNEEKIFIEAVFGGEKIDRQIGN 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
           L+R   V++ TPGR++D   RG + +++++ +V+DEAD ML MGF    Q++  ++ F+ 
Sbjct: 120 LKRTTHVVVATPGRLIDLIERGDIDISHVKTVVLDEADEMLSMGFK---QDLNRILKFSS 176

Query: 178 ---RQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
              R T LFSATM +E++++ + ++  N  R+EVN  +     I H FV T  +   K  
Sbjct: 177 QSDRNTWLFSATMPEEIKRIIKTYMDSNAPRVEVNKNALVNANIRHQFVKTTLK--TKAN 234

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            +   L+ + T + GIIFC  K    NL + L ++GFS  A+ G++ Q+ R K++  FK+
Sbjct: 235 DIITFLEKRGTQR-GIIFCRTKAGAQNLANLLIEEGFSTAALEGDMQQKERDKVMRAFKK 293

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             +Q +V++D++ARG+D+  +  V +  +P + E Y HR GRT RAG+ G +   +   +
Sbjct: 294 ENLQYLVSTDVSARGIDVSGLEFVIHHQLPEQLEYYTHRSGRTARAGKTGTSLAFILPNE 353

Query: 354 IKHIDAIEKLIEKK 367
           ++ +  I+K ++ K
Sbjct: 354 LEKVHDIQKALQIK 367


>gi|239944102|ref|ZP_04696039.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
           15998]
          Length = 395

 Score =  229 bits (584), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 118/310 (38%), Positives = 185/310 (59%), Gaps = 6/310 (1%)

Query: 63  LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +E GRA+       P+ L++ PTREL  QV ++    GK  N+ V  + GG  +E Q + 
Sbjct: 7   VEAGRAKPEQLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEA 66

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G DV++ TPGR+LD   + KL +++I  LV+DEAD MLD+GF+P ++ I +++P  R
Sbjct: 67  LKKGVDVIVGTPGRLLDLAGQRKLDLSHIRGLVLDEADEMLDLGFLPDVERIITMLPAKR 126

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQ 237
           QT+LFSATM   +  ++  ++  P  I   +P     T+++     Y A    K  +L +
Sbjct: 127 QTMLFSATMPGAVISLARRYMSQPTHINATSPDDEGTTVKNTVQHVYRAHNMDKPEMLAR 186

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +LQ+ D     +IFC  K+   ++   LEK+GF+  A+HG++ Q +R + L  F+ G + 
Sbjct: 187 ILQA-DGRGLAMIFCRTKRTAADIAEQLEKRGFASGAVHGDLGQGAREQALRAFRNGKVD 245

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAG  G A TLV  +DI   
Sbjct: 246 VLVCTDVAARGIDVEGVTHVVNYQSPEDEKTYLHRIGRTGRAGAKGVAITLVDWDDIPRW 305

Query: 358 DAIEKLIEKK 367
             I K ++ K
Sbjct: 306 QLINKALDLK 315


>gi|157125871|ref|XP_001654429.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108873494|gb|EAT37719.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 804

 Score =  229 bits (584), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 133/351 (37%), Positives = 199/351 (56%), Gaps = 2/351 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP L  
Sbjct: 183 FYQMNLSRPLMKAIGVLGYIYPTPIQAATIPIALLGRDICGCAATGTGKTAAYMLPTLER 242

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L K  A   + R L+L PTREL AQV    ++  +  ++ V + IGG+  +AQ   L  
Sbjct: 243 LLYKPSAAQAVTRVLVLVPTRELGAQVYQVSKQLTQFTSIEVGIAIGGLDVKAQEAVLRT 302

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I      TRQT
Sbjct: 303 NPDVVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIIQSCSKTRQT 362

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTD+++ ++   L  P ++ VN   + A  +   F+            L   L 
Sbjct: 363 MLFSATMTDQVKDLAAVSLTKPVKVFVNNNQTVAFNLRQEFIRIREGREADREPLLAALI 422

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F   KK    L   L   G     +HG++ Q  R++ L  FK+  + +++
Sbjct: 423 CRTFHDHCMVFVQTKKTAHRLRILLGLLGVKSGELHGDLTQSQRLESLKQFKDEQVDVLI 482

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAG+ G + +L  +
Sbjct: 483 ATDVAARGLDISGVKTVINFVMPITMEHYIHRVGRTARAGKAGVSVSLAGE 533


>gi|258597823|ref|XP_001348611.2| helicase, putative [Plasmodium falciparum 3D7]
 gi|255528866|gb|AAN37050.2| helicase, putative [Plasmodium falciparum 3D7]
          Length = 527

 Score =  229 bits (584), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 146/425 (34%), Positives = 225/425 (52%), Gaps = 28/425 (6%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILE 64
           +G    V+ ++ +   V PTPIQI+  P+ L   D+ G A+TG+GKT +F+LP    IL 
Sbjct: 118 IGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILA 177

Query: 65  KGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
           +   +    P  L+L PTRELA Q+     K+     +      GG+P   Q   L++G 
Sbjct: 178 QPNLKYGDGPIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGV 237

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            +LI  PGR++D   +    +  +  LV+DEAD+MLDMGF   I+ I   +   RQTL++
Sbjct: 238 HILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQTLMW 297

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-----EHCFVATYAQYSKKCALLQQL 238
           SAT   E+Q ++++  +  + I+VN  S T         E   +  + +     +LLQ++
Sbjct: 298 SATWPKEVQALAKDLCKE-QPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRI 356

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +  D +   I+F   KKN   +  +L   G     IHG+  Q  R  +L+ FK G   +
Sbjct: 357 FKDNDRI---IVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPI 413

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+D+A+RGLDI +V +V NFD PN+ E+Y+HRIGRTGRAG HG +FT +  +      
Sbjct: 414 MIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKY---- 469

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
              +L +  V  L      + P LEKI  +  N+ R+N   P  S+G        S+  +
Sbjct: 470 ---RLAKDLVKILRESEQPVPPQLEKISYSMGNNQRRN---PYYSSG-------RSNNVN 516

Query: 419 HIPLK 423
           +IPL+
Sbjct: 517 NIPLR 521


>gi|301112795|ref|XP_002998168.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262112462|gb|EEY70514.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 823

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 136/400 (34%), Positives = 220/400 (55%), Gaps = 58/400 (14%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK------ 65
           V  A+ D G+ +P+PIQ++ IP+ LQ+ D+ GIA+TG+GKTA+FV+P++  +        
Sbjct: 370 VYKAIKDLGFERPSPIQMQAIPIGLQKRDIIGIAETGSGKTAAFVIPIIAYIYSLPATMV 429

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA---------LLIGGIPFEAQN 116
            R   + P  L++ PTRELA Q+     K  K+ ++ +           ++GG   E Q 
Sbjct: 430 ARTGEQGPLALVMAPTRELALQIEQEAIKLCKHTSVGLPEKMNPIKTLSVVGGQSIEDQG 489

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI----QNITS 172
            +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +    +N+ S
Sbjct: 490 FRLREGVEIIIGTPGRLMDCLESHYLVLNQCNYVVLDEADRMIDMGFEPQVVAVLENMGS 549

Query: 173 LVPFT------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEV- 207
           L+                           R T +FSATM  E++++++ FL++P  +++ 
Sbjct: 550 LLKSENEEEMEQQLTLANRAQLGEFQHRLRVTTMFSATMPVEVERLAKTFLRHPSIVKIG 609

Query: 208 NTPSSTAETIEH--CFVATYAQYSKKCALLQQLLQSQ---------DTMKNG---IIFCN 253
           +  S   + IE    F+    + SK   +L+ +L +Q         + + +G   I+F N
Sbjct: 610 DEDSGKNKRIEQRVMFMNPGKKRSKLVEVLRDILSAQNVPVPRSRKEKVVDGAKIIVFVN 669

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            KK   ++   +  +GF    +HG   Q  R + L  F+EG   ++VA+D+A RGLDIPD
Sbjct: 670 IKKECDSVAKFISSEGFRCTILHGGKTQDQREESLKMFREGYCDMLVATDVAGRGLDIPD 729

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           V HV NFD+P++ +NY HRIGRTGRAG+ G A +L+  +D
Sbjct: 730 VTHVVNFDLPSKIQNYSHRIGRTGRAGKDGVAISLLTDDD 769


>gi|189239274|ref|XP_969642.2| PREDICTED: similar to conserved hypothetical protein [Tribolium
            castaneum]
          Length = 1494

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 127/373 (34%), Positives = 206/373 (55%), Gaps = 5/373 (1%)

Query: 10   PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK---G 66
            P+++  +  AG+ +P+PIQ +  P++L   D+ GIAQTGTGKT +F+LP L  ++     
Sbjct: 1096 PEILEEMKKAGFTRPSPIQSQAWPVLLSGEDLIGIAQTGTGKTLAFLLPALIHIDGQNIK 1155

Query: 67   RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
            ++    P  L++ PTRELA Q+    +KY +   +T   + GG     Q K L  G D++
Sbjct: 1156 KSERGGPAVLVMAPTRELALQIDKEVKKY-EYKGITAVCIYGGGNRREQIKVLTDGVDIV 1214

Query: 127  ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
            I TPGR+ D    G L +  +  +V+DEADRMLDMGF P I+ +   +  TRQT++ SAT
Sbjct: 1215 IATPGRLNDLAEAGHLEVKYVTYVVLDEADRMLDMGFEPQIRKVMYSIRPTRQTVMTSAT 1274

Query: 187  MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
                +++++++++ +P +I V T    A  T+            +K         + D  
Sbjct: 1275 WPPGVRRLAQSYMVDPIQIYVGTLDLAATHTVTQIIEIIPDDDQEKFRTFMNFATNLDPS 1334

Query: 246  KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
            +  I FC +K     L   L   G     IHG+ DQ  R + L +  +GT+Q+++A+D+A
Sbjct: 1335 EKVIAFCGKKARADELSTELTLAGLQCQTIHGDRDQSDREQALLDIADGTVQILIATDVA 1394

Query: 306  ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
            +RGLDI D+ HV N+D P   E Y+HR+GRTGRAG+ GK+ +   + D      +  ++E
Sbjct: 1395 SRGLDIDDITHVINYDFPRNIEEYVHRVGRTGRAGKSGKSISYFTRGDWAQAKELIAILE 1454

Query: 366  KKVDWLNGDLSSL 378
            +   ++  +L  +
Sbjct: 1455 EAQQYVPEELYKM 1467


>gi|56090019|gb|AAV70960.1| Vasa [Carassius gibelio]
          Length = 701

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 148/426 (34%), Positives = 231/426 (54%), Gaps = 31/426 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + G    +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 264 MTFDEAGPCESLRKNVTKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 323

Query: 61  T-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G A      V+ P  +I+ PTREL  Q+     K+     +   ++ GGI    
Sbjct: 324 QRLMADGVAASKFSEVQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGY 383

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +++ +G ++L  TPGR+LD   RGK+ ++ +  LV+DEADRMLDMGF P ++ +    
Sbjct: 384 TIREVLKGCNILCGTPGRLLDIIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRKLVGSP 443

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +++Q+++ +FL+ +   + V         +E   +    QYS
Sbjct: 444 GMPSKEDRQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIIQV-DQYS 502

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL  LL+S  T +  ++F   K++   +   L ++  S  +IHG+ +QR R K LS
Sbjct: 503 KRDQLLD-LLRSTGTERT-MVFVETKRSADFIATFLCQEKLSTTSIHGDREQREREKALS 560

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G   ++VA+ +AARGLDI  V HV NFD+P+  + Y+HRIGRTGR G  G+A +  
Sbjct: 561 DFRTGQCPVLVATSVAARGLDIEQVQHVVNFDLPSSIDEYVHRIGRTGRCGNIGRAVSFF 620

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             E      +   L    V  L+G    +   LE+I  + H            +TGF+ R
Sbjct: 621 NPE------SDTPLARSLVKVLSGAQQEVPKWLEEIAFSAHG-----------TTGFNPR 663

Query: 410 KKNYSS 415
            K ++S
Sbjct: 664 GKVFAS 669


>gi|326477276|gb|EGE01286.1| ATP-dependent RNA helicase DBP10 [Trichophyton equinum CBS 127.97]
          Length = 941

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 136/396 (34%), Positives = 210/396 (53%), Gaps = 43/396 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+P ++ A+   G+  PTPIQ KTIPL+L   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 95  FQAMGLNPNLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 154

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 155 LRNHSTKV-GARGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMASN 213

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I   V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 214 PDIIIATPGRFLHLKVEMNLDLSSIRYAVFDEADRLFEMGFAAQLTEILHALPTSRQTLL 273

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
           FSAT+   L + +   LQ P  I ++  S  +  ++  F  T     K+ ALL  L    
Sbjct: 274 FSATLPKSLVEFARAGLQEPTLIRLDADSKISPDLQSAFF-TVKSADKEGALLHILHDII 332

Query: 239 --------------LQSQD-----------------------TMKNGIIFCNQKKNVVNL 261
                          ++Q+                       T  + I+F   K +V  +
Sbjct: 333 KIPTGETEAGKLAKKEAQEGKQGTSKKRKRADMKGPGAHGTPTEHSTIVFVATKHHVEYI 392

Query: 262 CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321
            + L   GF+V   +G+++Q +R   + NF+ G   ++V +D+AARG+DIP + +V N+D
Sbjct: 393 ANLLRHSGFAVSYAYGSLNQTARKIQVQNFRAGISNILVVTDVAARGIDIPVLANVINYD 452

Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            P++ + YIHR+GRT RAG+ G +++LV   D  ++
Sbjct: 453 FPSQPKIYIHRVGRTARAGQKGWSYSLVRDSDAPYL 488


>gi|124506289|ref|XP_001351742.1| snrnp protein, putative [Plasmodium falciparum 3D7]
 gi|23504671|emb|CAD51549.1| snrnp protein, putative [Plasmodium falciparum 3D7]
          Length = 1123

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 130/380 (34%), Positives = 203/380 (53%), Gaps = 33/380 (8%)

Query: 3    FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
            + +  LS  ++ A+  A Y KPTPIQ++ IP+ L+  D+ GIA+TG+GKTA+FVLPML+ 
Sbjct: 700  WEESNLSNDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSY 759

Query: 63   LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +++            P  L++ P+RELA Q+ +   K+    +     ++GG   EAQ  
Sbjct: 760  VKQLPPLTYETSQDGPYALVIAPSRELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQAF 819

Query: 118  KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +L RG +++I TPGR+ D   +   ++N    +++DEADRM+DMGF   +  I   +P +
Sbjct: 820  ELRRGVEIVIGTPGRLQDCLEKAYTVLNQCNYVILDEADRMMDMGFEDTVHYILDKIPTS 879

Query: 178  ------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
                                    R T +FSATM   ++++S  +L+ P  I +  P + 
Sbjct: 880  NLKSEDDALALQEEMMTKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGAG 939

Query: 214  AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
              +IE      +    KK   LQ++L+  +     I+F NQKK    +  S+ K  +   
Sbjct: 940  KRSIEQKL--EFLTEGKKKQKLQEILEMYEPP--IIVFVNQKKVADIISKSITKMKYKAV 995

Query: 274  AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            A+HG   Q  R + LS FK     ++VA+D+A RG+D+  V  V NFD+P   E+Y HRI
Sbjct: 996  ALHGGKAQEIREQTLSAFKNAEFDILVATDVAGRGIDVHGVKLVINFDMPKDIESYTHRI 1055

Query: 334  GRTGRAGRHGKAFTLVAKED 353
            GRTGRAG  G A + + + D
Sbjct: 1056 GRTGRAGMKGLAISFITEHD 1075


>gi|162464317|ref|NP_001105848.1| putative RH2 protein [Zea mays]
 gi|84322402|gb|ABC55720.1| putative RH2 protein [Zea mays]
 gi|146217167|gb|ABQ10647.1| RNA helicase 2 [Zea mays]
 gi|194700534|gb|ACF84351.1| unknown [Zea mays]
          Length = 407

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 203/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G+   ++  +   G+ KP+ IQ + +  ++   DV   AQ+GTGKT+   L +  I
Sbjct: 36  FDQMGIKDDLLRGIYGYGFEKPSAIQQRAVLPIINGRDVIAQAQSGTGKTSMISLTVCQI 95

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + LIL PTRELA+Q        G + N+ V   IGG       ++LE G
Sbjct: 96  VDTA---VREVQALILSPTRELASQTERVMLAIGDHLNVQVHACIGGKSIGEDIRRLENG 152

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML  GF   I ++   +P   Q +L
Sbjct: 153 VHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDEADEMLSRGFKDQIYDVYRYLPPELQVVL 212

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+  P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 213 ISATLPHEILEMTSKFMTEPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL- 271

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   +    F+V A+HG++ Q+ R  I+  F+ G  +++
Sbjct: 272 ----TITQAVIFCNTKRKVDWLTEKMRSNNFTVSAMHGDMPQQERDAIMGEFRSGATRVL 327

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V K+DI+ +  
Sbjct: 328 ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRKDDIRILRD 387

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 388 IEQYYSTQIDEMPMNVADL 406


>gi|327394851|dbj|BAK12273.1| ATP-dependent RNA helicase SrmB [Pantoea ananatis AJ13355]
          Length = 442

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 131/341 (38%), Positives = 191/341 (56%), Gaps = 4/341 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73
           A+ + GY +PT IQ   IP  L+  DV G A TGTGKTA+++LP+L  +L+  R +   P
Sbjct: 18  ALQEKGYTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPVLQHLLDFPRKKSGPP 77

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R LIL PTRELA QVAD   +  K+ +L +A + GG+ F    +      DV++ T GR+
Sbjct: 78  RILILTPTRELAMQVADQARELAKHTHLDIATITGGVAFMNHAEVFSENQDVVVATTGRL 137

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE-LQ 192
           L +          +E L++DEADRMLDMGF   I+ I     + +QT+LFSAT+  E ++
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQTMLFSATLEGEHIK 197

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
             +E  L  P  +E +      + I+  +         K  LL  LL+ Q  +   I+F 
Sbjct: 198 DFAERLLNEPVELEADPSRRERKKIQQWY-HRADDLEHKTKLLVHLLK-QPEVTRSIVFV 255

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
            +++ +  L   L   G     + G + Q  R + +    EG + ++VA+D+AARG+D+ 
Sbjct: 256 RKRERLHELVSWLHDAGIRTSYLEGEMVQAKRNEAIKRLVEGRVNVLVATDIAARGIDVD 315

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           DV HV NFD+P  A+ Y+HRIGRTGRAGR G A +LV   D
Sbjct: 316 DVSHVINFDMPRTADTYLHRIGRTGRAGRKGIAISLVEAHD 356


>gi|26327531|dbj|BAC27509.1| unnamed protein product [Mus musculus]
          Length = 909

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 134/359 (37%), Positives = 198/359 (55%), Gaps = 10/359 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 97  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 156

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K R+     R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 157 L-KARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHEN 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I   +P   QT+L
Sbjct: 216 PDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVL 275

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA----LLQQL 238
           FSAT+   L + +   L  P  I ++  S   E ++  F+    +   K A    LLQ +
Sbjct: 276 FSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFL--LVREDTKAAVLLYLLQNV 333

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ QD     ++F   K +   L   L  QG S   I+  +DQ +R   L+ F       
Sbjct: 334 VRPQDQT---VVFVATKHHAEYLTELLMGQGVSCAHIYSALDQTARKINLAKFTHNKCST 390

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ +DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA +++ ++
Sbjct: 391 LIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYL 449


>gi|66810480|ref|XP_638950.1| hypothetical protein DDB_G0283661 [Dictyostelium discoideum AX4]
 gi|74897085|sp|Q54QS3|DDX3_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx3; AltName:
           Full=DEAD box protein 3
 gi|60467576|gb|EAL65597.1| hypothetical protein DDB_G0283661 [Dictyostelium discoideum AX4]
          Length = 712

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 129/367 (35%), Positives = 200/367 (54%), Gaps = 19/367 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FAD+ L   ++  +  A Y KPTP+Q   +P++L+  D+   AQTG+GKTA+F+ P+++ 
Sbjct: 249 FADVDLGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAAFLFPIISG 308

Query: 62  -----------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                        + G  R   PR L+L PTRELA Q+ D   K+     ++  ++ GG 
Sbjct: 309 ILLDGAPEAPPAYKPGVPRAACPRALVLAPTRELAQQIFDEANKFSYGSPVSSVVIYGGA 368

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q  +L+RG D+L+ T GR++D   RG++ ++ I+ LV+DEADRMLDMGF P I+ I
Sbjct: 369 EVFHQINELDRGCDILVATTGRLVDLLMRGRVSLSKIKYLVLDEADRMLDMGFEPQIRQI 428

Query: 171 TSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
            S         RQTL+FSAT   ++Q ++ +FL N   ++V    +T    +      Y 
Sbjct: 429 ISEFDMPGCRDRQTLMFSATFPKQIQNLAADFLYNYIFLKVGVVGTTQNITQRI---EYV 485

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
               K + L   L    +    +IF   K++   L + L ++ F    IHG++ Q  R  
Sbjct: 486 VEEDKNSYLLDYLSGLKSDGLCLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPEREN 545

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L +F+      +VA+D+A+RGL I +V  V NFD+P     Y+HRIGRTGRAG+ G A 
Sbjct: 546 ALQSFRSFATPFLVATDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAI 605

Query: 347 TLVAKED 353
           +   +++
Sbjct: 606 SFFNEKN 612


>gi|300796770|ref|NP_001178477.1| ATP-dependent RNA helicase DDX54 [Rattus norvegicus]
 gi|293341214|ref|XP_002724870.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 54-like isoform 2
           [Rattus norvegicus]
          Length = 874

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 133/357 (37%), Positives = 197/357 (55%), Gaps = 6/357 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 97  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 156

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K R+     R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 157 L-KARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHEN 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I   +P   QT+L
Sbjct: 216 PDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVL 275

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLLQ 240
           FSAT+   L + +   L  P  I ++  S   E ++  F  V    + +    LLQ +++
Sbjct: 276 FSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFFLVREDTKTAVLLYLLQNVVR 335

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     ++F   K +   L   L  QG S   I+  +DQ +R   L+ F       ++
Sbjct: 336 PQD---QNVVFVATKHHAEYLTELLTGQGVSCAHIYSALDQTARKINLAKFTHNKCSTLI 392

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA +++ ++
Sbjct: 393 VTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYL 449


>gi|269123479|ref|YP_003306056.1| DEAD/DEAH box helicase domain-containing protein [Streptobacillus
           moniliformis DSM 12112]
 gi|268314805|gb|ACZ01179.1| DEAD/DEAH box helicase domain protein [Streptobacillus moniliformis
           DSM 12112]
          Length = 543

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 8/363 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHD-VCGIAQTGTGKTASFVLPM 59
           M+F D  LS +++ A+    +V P+ IQ   IP +L+    + G AQTGTGKTA+F +P 
Sbjct: 1   MNFKDYNLSNEMLEALEKKRFVSPSEIQALVIPELLKEETHLIGQAQTGTGKTAAFSIP- 59

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ILEK     ++ + LIL PTRELA QV+D          + +  + GG   E Q K L
Sbjct: 60  --ILEKIIPTKKV-KALILAPTRELANQVSDEIYSLKGKKEVKILAVYGGASIENQIKNL 116

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G D+++ TPGR++D  N+G L +N +E  V+DEAD ML+MGFI  I+ I       ++
Sbjct: 117 KKGVDIVVGTPGRVIDMINKGALKLNELEYFVLDEADEMLNMGFIEDIELILEKTNEDKK 176

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSAT+   +  +++ F+   K ++V     T    E  +     +  K  AL + L 
Sbjct: 177 MLFFSATIPKPILAIAKRFMPEHKILKVQKKELTTHLTEQIYFEVRRE-DKFEALCRVLD 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D    GI+FC  K  V  + + L+ + +   AIHG+I Q  R K L  FK   + ++
Sbjct: 236 YKPDFY--GIVFCRTKSEVDEVTNKLKARNYDAEAIHGDITQGLREKALDLFKNKILNIL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ ++ HV N+ +P  +++Y+HRIGRTGRAG  G A T V  ++ + +  
Sbjct: 294 VATDVAARGIDVSNLTHVINYSIPQESDSYVHRIGRTGRAGNKGIAITFVTPQESRKLAQ 353

Query: 360 IEK 362
           I++
Sbjct: 354 IKR 356


>gi|145351197|ref|XP_001419971.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580204|gb|ABO98264.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 575

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 207/368 (56%), Gaps = 30/368 (8%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK-- 65
           L  +++ A+   GY KP+PIQ+ +IP+ L + DV GIA+TG+GKT +FV+PML  + +  
Sbjct: 162 LPQEILRAIAQVGYEKPSPIQMASIPIGLLKRDVIGIAETGSGKTCAFVVPMLAHIMQLP 221

Query: 66  ---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                     P  LI+ PTRELA Q+ +   K+ +  +  V L++GG   E Q  KL +G
Sbjct: 222 KMTDEIAAHGPYALIMAPTRELAQQIEEETLKFAQYLDYRVGLVVGGQSIEDQGFKLRKG 281

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT------SLVP- 175
            ++L+ TPGRI+D   R   +++    +V+DEADRM+DMGF P +  +       +L P 
Sbjct: 282 VEILVGTPGRIIDVIERRYTVLSQCNYIVLDEADRMIDMGFEPQVVAVMEAMGSGNLKPE 341

Query: 176 -----FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQY 228
                   Q L      +  +++++ ++L+NP  + + +   T++ I  E  +V+   + 
Sbjct: 342 DEAEELDGQALEQGGPTSSNVERLARSYLRNPAVVTIGSAGKTSDLIKQEIIWVSRNERD 401

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNV---VNLCHSLEKQGFSVCAIHGNIDQRSRM 285
           SK      +L+ S+      I+F N K++V    NLC+ L   G+S  +IHG   Q  R 
Sbjct: 402 SKF-----ELVLSRHPNTQAIVFVNAKRSVDAVANLCYRL---GYSCASIHGGKSQDQRE 453

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L  FK G   ++VA+D+A RG+D+  +  V N+++P+  ENY HRIGRTGRAGR G A
Sbjct: 454 ESLRGFKAGDYDILVATDVAGRGIDVKGIDLVVNYELPHTIENYTHRIGRTGRAGRKGTA 513

Query: 346 FTLVAKED 353
            + +  +D
Sbjct: 514 VSFLTSDD 521


>gi|73969095|ref|XP_860442.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 5 [Canis
           familiaris]
          Length = 630

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 133/376 (35%), Positives = 198/376 (52%), Gaps = 30/376 (7%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 100 PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 159

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG
Sbjct: 160 LERGDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           +SAT   E++                      E +  C  A      +   L+++++  +
Sbjct: 276 WSATWPKEVRHFY---------------IMCGEILSECIFAGLV--FRLIQLMEEIMAEK 318

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   +++A+
Sbjct: 319 ENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 376

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    + K
Sbjct: 377 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIK 436

Query: 363 LIEKKVDWLNGDLSSL 378
           ++E+    +N  L  L
Sbjct: 437 VLEEANQAINPKLMQL 452


>gi|293341212|ref|XP_001079855.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 54-like isoform 1
           [Rattus norvegicus]
 gi|293352594|ref|XP_573400.3| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2
           [Rattus norvegicus]
          Length = 874

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 133/357 (37%), Positives = 197/357 (55%), Gaps = 6/357 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 97  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 156

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K R+     R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 157 L-KARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHEN 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I   +P   QT+L
Sbjct: 216 PDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVL 275

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLLQ 240
           FSAT+   L + +   L  P  I ++  S   E ++  F  V    + +    LLQ +++
Sbjct: 276 FSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFFLVREDTKTAVLLYLLQNVVR 335

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     ++F   K +   L   L  QG S   I+  +DQ +R   L+ F       ++
Sbjct: 336 PQD---QNVVFVATKHHAEYLTELLTGQGVSCAHIYSALDQTARKINLAKFTHNKCSTLI 392

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA +++ ++
Sbjct: 393 VTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYL 449


>gi|226329076|ref|ZP_03804594.1| hypothetical protein PROPEN_02979 [Proteus penneri ATCC 35198]
 gi|225202262|gb|EEG84616.1| hypothetical protein PROPEN_02979 [Proteus penneri ATCC 35198]
          Length = 340

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 120/299 (40%), Positives = 186/299 (62%), Gaps = 5/299 (1%)

Query: 74  RTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
           ++LIL PTRELA QVA+   +  +   N+ V  L GG+PF  Q   L   A +++ TPGR
Sbjct: 15  QSLILCPTRELADQVANELRRLARYLPNIKVLTLCGGVPFSIQRDSLIHAAHIIVATPGR 74

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           +LDH  +  + +++++ LV+DEADRMLDMGF   I +I S +P  RQTLLFSAT  +E+ 
Sbjct: 75  LLDHLKKETVTLDDVKTLVLDEADRMLDMGFFDDINDIISRMPTARQTLLFSATWPNEIA 134

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
            +S    QNP  IE+N+       +E  F         K  LLQ+LL S++   + ++FC
Sbjct: 135 TISRKIQQNPITIEINSVDELP-AVEQQFYEI--SRHGKIGLLQKLL-SREQPASCVVFC 190

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
           N K++  ++  +L +   SV A+HG+++QR R + L  F  G+ +++VA+D+AARGLDI 
Sbjct: 191 NTKRDCQDVYETLTESNQSVLALHGDMEQRERDQTLIRFANGSCRVLVATDVAARGLDIK 250

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
            +  V N+++    E ++HRIGRT RAG  G A +  A E+I+  +A+E+++  K++WL
Sbjct: 251 ALEMVINYELSWDPEVHVHRIGRTARAGESGLAISFCAPEEIQRANALEEMLHMKINWL 309


>gi|255578793|ref|XP_002530253.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223530219|gb|EEF32123.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 1173

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 137/381 (35%), Positives = 211/381 (55%), Gaps = 15/381 (3%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT----- 61
           GL+ K++  +    Y KP PIQ + +P+++   D  GIA+TG+GKT +FVLPML      
Sbjct: 533 GLASKILETIKKLNYEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQ 592

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ++E G      P  LI+ PTREL  Q+  + +K+ K   +    + GG     Q  +L+
Sbjct: 593 PLVEAGDG----PIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELK 648

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RG ++++CTPGR++D    + GK+  +  +  LV+DEADRM DMGF P I  I   +   
Sbjct: 649 RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 708

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT   +++ ++   L  P  I+V   S   + I    V    +  +   LL+ 
Sbjct: 709 RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRPESERFLRLLEL 767

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L +  +  K  +IF   +     L   L K G+   ++HG  DQ  R   +S+FK     
Sbjct: 768 LGEWNEKGKI-LIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCN 826

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L++A+ +AARGLD+ ++  V NFDVPN  E+Y+HR+GRTGRAGR G A T +++ED ++ 
Sbjct: 827 LLIATSIAARGLDVKELDLVVNFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYA 886

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K +E     +  DL +L
Sbjct: 887 PDLVKALELSEQVVPEDLKAL 907


>gi|126208042|ref|YP_001053267.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           L20]
 gi|126096834|gb|ABN73662.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 406

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 138/387 (35%), Positives = 221/387 (57%), Gaps = 12/387 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   V+ A+   G+   TPIQ KT+P+ L   D+ G AQT TGKT +F++ +   
Sbjct: 10  FIDFPIHENVLAALDSKGFEFCTPIQAKTLPITLAGQDIAGQAQTRTGKTLAFLIAVFHY 69

Query: 63  LEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L    +      PR +IL PTRELA Q+  + E   K+ +L +AL  GG  ++ Q + +E
Sbjct: 70  LLTNDSVTNKNQPRAIILAPTRELAVQIGSDAELLVKHSDLKLALAYGGDGYDKQVQAIE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ- 179
           +G D+L+ T GR++D+  +G + ++ ++++V+DEADRM D+GFI  I+ +    P   Q 
Sbjct: 130 QGVDILVGTTGRVIDYVKQGIINLDKVQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEQR 189

Query: 180 -TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237
            T+LFSAT++  +++++   + N + IE+     T   I E  F   Y     K ALL  
Sbjct: 190 LTMLFSATLSARVRELAYEDMNNAQYIEIEPLQRTGHRIKEELF---YPSNEDKMALLLT 246

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +      +IF N K     + + L   G  V  + G+I Q+ R+ +L +F +G + 
Sbjct: 247 LLEEE-WPDRCMIFANTKHKCEEIWNYLVADGHRVGLLTGDIAQKKRLALLDSFTKGQLD 305

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP+V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +    ++
Sbjct: 306 ILVATDVAARGLHIPEVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISFACERYAVNL 365

Query: 358 DAIEKLIEKKV---DWLNGDLSSLNPP 381
            AIE  I   +    + +G L +L  P
Sbjct: 366 PAIEAYIGHHIPVSQYDSGALLTLPKP 392


>gi|254505518|ref|ZP_05117665.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
 gi|219551635|gb|EED28613.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
          Length = 412

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 207/368 (56%), Gaps = 8/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L PK+V A L    VKPT IQ   IP +L   DV   A TG+GKT +++LP+L
Sbjct: 1   MSFSSLSLVPKLVQA-LPQNVVKPTDIQALVIPQMLAEKDVLAQANTGSGKTLAYLLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L          + L+L PTRELA QV D+  +  +   L+  +L GG+    Q  KL 
Sbjct: 60  QRLLPNPDH----QALVLVPTRELAFQVNDSVGEITQPLGLSSVVLCGGVDKAQQQAKLA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  ++LI T GR+LD  +  +L +  ++ L++DEADR+LDMGF P +Q I   +P  RQT
Sbjct: 116 KRPNILIATTGRLLDLLSAEELSLKRVKTLILDEADRLLDMGFWPDVQAIAEKLPAQRQT 175

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT +D L++ +   +  P  +  +  +ST + I         + SK  AL++  L 
Sbjct: 176 AMFSATFSDALKQKATALMSAPVALTAHQENSTNKDIAETLYLVN-KGSKAKALIE--LI 232

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+     ++F   K+N  +L   L K   +  A+HGN  Q  R + L+ FK G  Q+++
Sbjct: 233 KQNHWSQALVFIGAKENADSLAKKLNKAAITTSALHGNKSQSEREETLAQFKSGQTQVLI 292

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG  G A +LV   + + ++AI
Sbjct: 293 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVAMSLVCHGETEALNAI 352

Query: 361 EKLIEKKV 368
             L ++++
Sbjct: 353 RSLTQREL 360


>gi|28076989|ref|NP_082317.1| ATP-dependent RNA helicase DDX54 [Mus musculus]
 gi|46576606|sp|Q8K4L0|DDX54_MOUSE RecName: Full=ATP-dependent RNA helicase DDX54; AltName: Full=DEAD
           box protein 54
 gi|21325958|gb|AAM47540.1|AF319547_1 ATP-dependent RNA-helicase [Mus musculus]
 gi|55249609|gb|AAH43699.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Mus musculus]
          Length = 874

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 134/359 (37%), Positives = 198/359 (55%), Gaps = 10/359 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 97  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 156

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K R+     R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 157 L-KARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHEN 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I   +P   QT+L
Sbjct: 216 PDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVL 275

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA----LLQQL 238
           FSAT+   L + +   L  P  I ++  S   E ++  F+    +   K A    LLQ +
Sbjct: 276 FSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFL--LVREDTKAAVLLYLLQNV 333

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ QD     ++F   K +   L   L  QG S   I+  +DQ +R   L+ F       
Sbjct: 334 VRPQDQT---VVFVATKHHAEYLTELLMGQGVSCAHIYSALDQTARKINLAKFTHNKCST 390

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ +DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA +++ ++
Sbjct: 391 LIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYL 449


>gi|302307229|ref|NP_983823.2| ADL273Cp [Ashbya gossypii ATCC 10895]
 gi|299788899|gb|AAS51647.2| ADL273Cp [Ashbya gossypii ATCC 10895]
          Length = 623

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 131/342 (38%), Positives = 194/342 (56%), Gaps = 18/342 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRA--------- 68
           A + KPTP+Q  ++P+V +  D+   AQTG+GKT  F+ P+L+     G A         
Sbjct: 164 ARFTKPTPVQKYSVPIVAKGRDLMACAQTGSGKTGGFLFPVLSQSFSNGPASTPDESGYY 223

Query: 69  -RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
            R   P  ++L PTRELA Q+ D  +K+     +   ++ GG     Q ++LERG D+++
Sbjct: 224 MRKAYPTAVVLAPTRELATQIFDEAKKFTYRSWVKPCVVYGGADIRQQIRELERGCDLIV 283

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLF 183
            TPGR+ D   RGK+ + +++ LV+DEADRMLDMGF P I++I           RQTL+F
Sbjct: 284 ATPGRLNDLLERGKISLCSVKYLVLDEADRMLDMGFEPQIRHIVEGCDMPTVENRQTLMF 343

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT   ++Q ++ +FL++   + V    ST+E I    V       K+  LL  L  S  
Sbjct: 344 SATFPTDIQHLAADFLKDYIFLSVGRVGSTSENITQK-VLHVEDIDKRSVLLDLLAASDG 402

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
            +   ++F   K+    L   L  Q  S  AIHG+  Q  R + L+ F+ G   ++VA+ 
Sbjct: 403 GLT--LVFVETKRMADALTDFLIMQNLSATAIHGDRTQAERERALAFFRTGRANVLVATA 460

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A
Sbjct: 461 VAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGLA 502


>gi|149248004|ref|XP_001528389.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152032662|sp|A5DU73|PRP28_LODEL RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|146448343|gb|EDK42731.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 597

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 133/401 (33%), Positives = 225/401 (56%), Gaps = 36/401 (8%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK- 65
           GL PK++ ++   G+ +PTP+Q  +IP+ L+  DV G+A+TG+GKT +F+LP+L  L + 
Sbjct: 191 GLDPKILASLKSFGFRQPTPVQRASIPISLELRDVVGVAETGSGKTLAFLLPLLHYLSRV 250

Query: 66  -----GRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                   +VR  P  L+L PTRELA Q+    EK+GK     V  +IGG  ++    ++
Sbjct: 251 DGNYLNYEKVRNEPLALVLAPTRELALQITQEAEKFGKQLGFNVLSIIGGRQYQETMDQI 310

Query: 120 E-----RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           +     RG  +++ TPGR+LD   R  L  +    LV+DEADRM+DMGF   +  + +L+
Sbjct: 311 DNMIVGRGVHIVVGTPGRLLDSVERKILNFSKCYYLVMDEADRMIDMGFEKDLNKLINLL 370

Query: 175 P----------------FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
           P                  R T++++AT++  ++K+++++L +P  I +       + I+
Sbjct: 371 PKNEKLSTTIDGKLFHLTKRLTMMYTATISPPIEKITKSYLIDPAYIYIGGAGEALDNID 430

Query: 219 HCF--VATYAQYSKKCALLQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCA 274
             F  ++TYA+ ++   L++ +   +   +N   IIF N K     L   LE+       
Sbjct: 431 QHFDYLSTYAESARLSKLIKVVQGHKRRNRNALVIIFANFKHVCDVLSLELEQNNLLNVV 490

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           IHG+  Q +R + L +F+     ++VA+D+AARG+D+P+V  V N+ +  + + YIHRIG
Sbjct: 491 IHGSKSQEAREEALEDFRTHQAPILVATDVAARGIDVPNVSLVINYQMSKKFDEYIHRIG 550

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE---KKV-DWL 371
           RTGRAG  G+++T +   D +    ++K ++   KKV +WL
Sbjct: 551 RTGRAGNLGESYTFLDDADAETFMPLKKFLKSGRKKVPEWL 591


>gi|119718785|ref|YP_925750.1| DEAD/DEAH box helicase domain-containing protein [Nocardioides sp.
           JS614]
 gi|119539446|gb|ABL84063.1| DEAD/DEAH box helicase domain protein [Nocardioides sp. JS614]
          Length = 507

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 127/375 (33%), Positives = 199/375 (53%), Gaps = 9/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   +   + D G V+PTPIQ  T+P  L   DV G  +TG+GKT +F+LP++  
Sbjct: 10  FADLGVPASLAAVLADRGIVQPTPIQAATLPDSLAGRDVLGRGRTGSGKTYAFLLPLVAR 69

Query: 63  L-EKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L   GR A+ R PR L+L PTREL  Q+ +  +   +   LT   + GG+    Q + L 
Sbjct: 70  LTASGRPAQARKPRALVLAPTRELVNQIEEALKPLARTAGLTTQTVFGGVGQNPQVQGLR 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGAD+++  PGR+ D   +G   ++ +EI V+DEAD M D+GF+P ++ I    P   Q 
Sbjct: 130 RGADIVLACPGRLEDLIGQGHCDLSQVEITVLDEADHMADLGFLPGVRRIMDRTPRDGQR 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+   +  + + FL+NP   + ++  S   T++H  +  +     +  +L  L  
Sbjct: 190 LLFSATLDKAIDVLVKRFLRNPVTHQADSAQSPVATMDHHVL--HVAREHRVPVLVDLTS 247

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       ++F   K     L   L K G     +HGN+ Q +R + +  F  G    +V
Sbjct: 248 APGRT---VVFTRTKYGAKALARQLNKSGVPAVELHGNLSQGARTRNMDAFHTGRASTLV 304

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   TL+  + ++ +  +
Sbjct: 305 ATDIAARGIHVDDVALVVHADPPVEHKAYLHRSGRTARAGARGTVITLMTDDQVRDVRDL 364

Query: 361 EKL--IEKKVDWLNG 373
            +   I+     +NG
Sbjct: 365 TRAAGIKPTTTRING 379


>gi|308160101|gb|EFO62607.1| DEAD box RNA helicase Vasa [Giardia lamblia P15]
          Length = 663

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 200/373 (53%), Gaps = 30/373 (8%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LG    ++  V    Y +PTPIQ   IPLVL   D+   +QTG+GKT SF+ P++  L  
Sbjct: 186 LGFPRDLIRNVEKLRYTQPTPIQENAIPLVLSSMDLLATSQTGSGKTFSFLSPIIAQLIT 245

Query: 66  GRAR-------------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            RA+             +  P  +IL PTREL  Q+A    +     +L V L+ GG   
Sbjct: 246 SRAKDAISEDDKNMEQSMSFPLAVILSPTRELTQQIAFMCYQLTFKTDLIVRLVYGGEGA 305

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q   L++G D++I TPGR+ D   R  L +  + ++V+DEAD+MLDMGF P I+++  
Sbjct: 306 REQRGLLKKGCDIVIATPGRLKDFLERKCLSLKYVRVMVLDEADKMLDMGFEPQIRDLVY 365

Query: 173 LVPF-------TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
                       RQTL+FSAT    +Q +++ +L N  RI V    ST  TI+  F   +
Sbjct: 366 KFDMPGNGSNGNRQTLMFSATFGTGVQAMAKRYLHNEARIHVGQIGSTTTTIKQQF-EYF 424

Query: 226 AQYS-----KKCALLQQLLQSQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
           A+ +     K+   L  +L+S  ++       +IF   KK++  +   L   G  VC +H
Sbjct: 425 AETAIKSVDKRIDKLIHILKSPGSIPTASFLTLIFVETKKDIGYIVTKLLNGGLKVCEMH 484

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G+++QR R   L +FK+G   ++VA+D+A RG+DI  + HV NFD P   + YIHRIGRT
Sbjct: 485 GDLEQRERQNNLKSFKDGKTPVLVATDVAQRGIDIGAIRHVINFDFPKDIDTYIHRIGRT 544

Query: 337 GRAGRHGKAFTLV 349
           GRAG  G A + +
Sbjct: 545 GRAGAEGLATSFI 557


>gi|146096170|ref|XP_001467723.1| ATP-dependent RNA helicase [Leishmania infantum JPCM5]
 gi|134072089|emb|CAM70788.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
 gi|322501693|emb|CBZ36774.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 614

 Score =  229 bits (584), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 134/377 (35%), Positives = 205/377 (54%), Gaps = 16/377 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA + L+P +   V    Y KPTP+Q   IP VL   D+   AQTG+GKTA++++P +  
Sbjct: 135 FATMALAPALAENVNRCRYQKPTPVQKYGIPCVLNGSDLMACAQTGSGKTAAYLIPAINF 194

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +        K       P  L+L PTREL+ Q+ +   K+     +   ++ GG     Q
Sbjct: 195 MLVNNLNRAKPTNSQSAPSALVLSPTRELSIQIYEEGRKFTYRTGIRCVVVYGGADPRHQ 254

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS--- 172
             +L RG  +L+ TPGR+ D F RG    +++  LV+DEADRMLDMGF P I+ I     
Sbjct: 255 IHELTRGCGLLVATPGRLSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRAIVQGPD 314

Query: 173 ---LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                P  RQTLL+SAT   E+Q+++  FL +   ++V    ST E I    V       
Sbjct: 315 SDMPPPGERQTLLYSATFPKEIQQMAREFLYHHHFLQVGRVGSTTENITQD-VRWVEDMD 373

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL+ L + Q   +  ++F  +K++   L   L +      +IHG+  QR R + L 
Sbjct: 374 KRGCLLEVLKEHQG--ERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALD 431

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G  +++VA+D+A+RGLDIP+V  V  +D+P+  ++Y+HRIGRTGRAG+ G A +  
Sbjct: 432 IFKSGVCRVLVATDVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGRTGRAGKRGTAISFF 491

Query: 350 AKEDIKHIDAIEKLIEK 366
             ++   +D +  L+ +
Sbjct: 492 NDKNRNIVDDLIPLLRE 508


>gi|157105113|ref|XP_001648723.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108869079|gb|EAT33304.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 400

 Score =  229 bits (584), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 207/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  V   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F    + I
Sbjct: 29  FNSMGLREELLRGVYAYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATF---SIAI 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     +R  + L L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 86  LQSMDTTLRETQVLCLSPTRELAVQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYG 145

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++LV+DEAD ML+ GF   I ++   +P   Q  L
Sbjct: 146 QHVVSGTPGRVFDMIKRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCL 205

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 206 ISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 264

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R +I+  F+ G  +++
Sbjct: 265 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRSGQSRVL 320

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 321 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRD 380

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 381 IEQYYSTQIDEMPMNVADL 399


>gi|315045858|ref|XP_003172304.1| ATP-dependent RNA helicase DBP10 [Arthroderma gypseum CBS 118893]
 gi|311342690|gb|EFR01893.1| ATP-dependent RNA helicase DBP10 [Arthroderma gypseum CBS 118893]
          Length = 940

 Score =  229 bits (584), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 139/407 (34%), Positives = 217/407 (53%), Gaps = 43/407 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+P ++ A+   G+  PTPIQ KTIPL+L   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 94  FQAMGLNPNLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 153

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +V   R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 154 LKNHSTKV-GARGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMAGN 212

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I   V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 213 PDIIIATPGRFLHLKVEMSLDLSSIRYAVFDEADRLFEMGFAAQLTEILHALPSSRQTLL 272

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
           FSAT+   L + +   LQ P  I ++  S  +  ++  F  T     K+ ALL  L    
Sbjct: 273 FSATLPKSLVEFARAGLQEPVLIRLDADSKISPDLQSAFF-TVKSADKEGALLHILHDLI 331

Query: 239 -----------LQSQDT--MKNG------------------------IIFCNQKKNVVNL 261
                      L  ++T   K G                        I+F   K +V  +
Sbjct: 332 KIPTGETEAGKLAKKETHEAKQGTSKKRKRSDMKGQGAHGTPTEHSTIVFVATKHHVEYI 391

Query: 262 CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321
            + L   GF+V   +G+++Q +R   + NF+ G   ++V +D+AARG+DIP + +V N+D
Sbjct: 392 ANLLRHSGFAVSYAYGSLNQTARKIQVQNFRAGISNILVVTDVAARGIDIPVLANVINYD 451

Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            P++ + YIHR+GRT RAG+ G +++LV   D  ++  ++  + +K+
Sbjct: 452 FPSQPKIYIHRVGRTARAGQKGWSYSLVRDSDAPYLIDLQLFLGRKL 498


>gi|170782512|ref|YP_001710845.1| putative ATP-dependent helicase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169157081|emb|CAQ02256.1| putative ATP-dependent helicase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 761

 Score =  229 bits (584), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 195/361 (54%), Gaps = 10/361 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   +V  + + G   P PIQ  TIP VL   DV G  +TG+GKT +F  P++  
Sbjct: 378 FAALGLGQNIVRVLEELGASSPFPIQAATIPDVLAGRDVLGRGRTGSGKTIAFGAPLVER 437

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L      K R   R PR LIL PTRELA Q+    +   ++  L    + GG+P   Q  
Sbjct: 438 LLENDGAKNRKMGRKPRALILAPTRELAMQIDRTVQPIARSVGLFTTTIFGGVPQFKQVG 497

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+RG D+LI TPGR+ D  ++G+L ++ I + V+DEAD M D+GF+  +Q I   V   
Sbjct: 498 ALQRGVDILIATPGRLEDLIDQGRLDLSEIVVTVLDEADHMCDLGFLEPVQRILRQVKKD 557

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q LLFSAT+   +  +   FL +P   EV      + TI+H  +    +   K A+++Q
Sbjct: 558 GQRLLFSATLDKGVATLVNEFLPSPSVHEVAGEDQASSTIDHRVL--LIEQRDKAAIIEQ 615

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   +      +IF   +     L   LE  G    ++HG+++Q  R + L     G ++
Sbjct: 616 LSSGEGKT---LIFARTRAFAEQLADQLEDAGIPATSLHGDLNQARRTRNLQLLTSGKVR 672

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+ + D+G V   D P+  ++Y+HR GRTGRAG+ G   TL+ K   + +
Sbjct: 673 VLVATDVAARGIHVDDIGLVIQADAPDEYKSYLHRAGRTGRAGKQGTVVTLITKARRRRM 732

Query: 358 D 358
           D
Sbjct: 733 D 733


>gi|116200971|ref|XP_001226297.1| hypothetical protein CHGG_08370 [Chaetomium globosum CBS 148.51]
 gi|118575173|sp|Q2GUI4|DBP3_CHAGB RecName: Full=ATP-dependent RNA helicase DBP3
 gi|88176888|gb|EAQ84356.1| hypothetical protein CHGG_08370 [Chaetomium globosum CBS 148.51]
          Length = 566

 Score =  229 bits (584), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 138/366 (37%), Positives = 199/366 (54%), Gaps = 29/366 (7%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE--------KGRARV 70
           A +  PTPIQ  + P  L   DV GIA+TG+GKT +F +P +  L         KG  R 
Sbjct: 199 ASFTAPTPIQAASWPFALSGRDVIGIAETGSGKTMAFAVPCIESLASSPKPNHAKGD-RT 257

Query: 71  RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER--GADVLIC 128
              R +++ PTRELA Q             L+V  L GG P + Q   L +  GAD+++ 
Sbjct: 258 AYARAVVVSPTRELAMQTHAAMSSLASLVGLSVVCLYGGAPKDDQRALLRKNSGADIIVA 317

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPFT-RQTLLFSAT 186
           TPGR+ D  + G + ++++   V+DEADRMLD GF   I+ I  S  P   RQTL+F+AT
Sbjct: 318 TPGRLKDFLSEGCVSLSDVMFAVLDEADRMLDKGFEEDIKLILGSCRPREKRQTLMFTAT 377

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIE-------------HCFVATYAQYSKKCA 233
               ++ ++E F+ +P +  +   +   E  E                V       K+  
Sbjct: 378 WPTSVRGLAEGFMIDPVKATIGNRTRAGEEGEGNGSTELQANIRIEQKVEVVDPRGKEQR 437

Query: 234 LLQQLLQSQ-DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           LL+ L ++Q  + KN   ++FC  KK  V +  +LE++G  VC+IHG++ Q  R + L +
Sbjct: 438 LLELLKEAQKGSAKNDRILVFCLYKKEAVRVEQNLERRGIRVCSIHGDLRQDQRTRSLES 497

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK GT  ++VA+D+AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG+ GKA TL  
Sbjct: 498 FKAGTTSVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKKGKAITLFT 557

Query: 351 KEDIKH 356
           + D  H
Sbjct: 558 EHDKSH 563


>gi|54038020|gb|AAH84268.1| LOC495097 protein [Xenopus laevis]
          Length = 717

 Score =  229 bits (583), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 129/355 (36%), Positives = 200/355 (56%), Gaps = 2/355 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   V+  GY  PTPIQ K +P++L   DV  +A+TG+GKTA F++PM   
Sbjct: 77  FQSMGLSYPVYKGVMKKGYKVPTPIQRKVVPVILDGKDVVAMARTGSGKTACFLIPMFEK 136

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+  + R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 137 LKAHSAQTGV-RGLILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 195

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I S +P TRQTLL
Sbjct: 196 PDIIIATPGRLMHVAIEMNLKLRSVEYVVFDEADRLFEMGFAEQLQEIISRLPETRQTLL 255

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +  ++ ++  F     +  K   LL  L    
Sbjct: 256 FSATLPKMLLEFARAGLTEPVLIRLDVDTKLSDQLKLSFFNVRVE-DKPAVLLHLLRCVV 314

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  +IF   K +   L   L+ QG     I+ ++DQ +R   L  F  G ++ ++ +
Sbjct: 315 KPQEQTVIFVATKHHAEYLRELLDMQGIPCSHIYSSLDQTARKINLGLFLHGKVRALLVT 374

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           D+AARG+DIP + +V N++ P +A+ ++HR+GR  RAGR G A++ +A ++I ++
Sbjct: 375 DVAARGIDIPMLDNVINYNFPPKAKLFLHRVGRVARAGRSGTAYSFIAPDEIPYV 429


>gi|19482136|gb|AAL89410.1|AF461759_1 vasa-like protein [Danio rerio]
          Length = 715

 Score =  229 bits (583), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 147/430 (34%), Positives = 232/430 (53%), Gaps = 31/430 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 276 MTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 335

Query: 61  T-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
              +  G A      ++ P  +I+ PTREL  Q+     K+     +   ++ GGI    
Sbjct: 336 QRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGY 395

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +++ +G +VL  TPGR+ D   RGK+ ++ +  LV+DEADRMLDMGF P ++ + +  
Sbjct: 396 TIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEPEMRKLVASP 455

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +++Q+++ +FL+ +   + V         +E   V    QYS
Sbjct: 456 GMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQV-DQYS 514

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL+ LL++    +  ++F   K++   +   L ++  S  +IHG+ +QR R K LS
Sbjct: 515 KRDQLLE-LLRATGNERT-MVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALS 572

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G   ++VA+ +AARGLDI  V HV NFD+P+  + Y+HRIGRTGR G  G+A +  
Sbjct: 573 DFRLGQCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFF 632

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             E      +   L    V  L+G    +   LE++  + H            +TGF+ R
Sbjct: 633 NPE------SDTPLARSLVKVLSGAQQVVPKWLEEVAFSAHG-----------TTGFNPR 675

Query: 410 KKNYSSQKSH 419
            K ++S  S 
Sbjct: 676 GKVFASTDSR 685


>gi|74694613|sp|Q75B50|DED1_ASHGO RecName: Full=ATP-dependent RNA helicase DED1
          Length = 623

 Score =  229 bits (583), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 131/342 (38%), Positives = 194/342 (56%), Gaps = 18/342 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRA--------- 68
           A + KPTP+Q  ++P+V +  D+   AQTG+GKT  F+ P+L+     G A         
Sbjct: 164 ARFTKPTPVQKYSVPIVAKGRDLMACAQTGSGKTGGFLFPVLSQSFSNGPASTPDESGYY 223

Query: 69  -RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
            R   P  ++L PTRELA Q+ D  +K+     +   ++ GG     Q ++LERG D+++
Sbjct: 224 MRKAYPTAVVLAPTRELATQIFDEAKKFTYRSWVKPCVVYGGADIRQQIRELERGCDLIV 283

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLF 183
            TPGR+ D   RGK+ + +++ LV+DEADRMLDMGF P I++I           RQTL+F
Sbjct: 284 ATPGRLNDLLERGKISLCSVKYLVLDEADRMLDMGFEPQIRHIVEGCDMPTVENRQTLMF 343

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT   ++Q ++ +FL++   + V    ST+E I    V       K+  LL  L  S  
Sbjct: 344 SATFPTDIQHLAADFLKDYIFLSVGRVGSTSENITQK-VLHVEDIDKRSVLLDLLAASDG 402

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
            +   ++F   K+    L   L  Q  S  AIHG+  Q  R + L+ F+ G   ++VA+ 
Sbjct: 403 GLT--LVFVETKRMADALTDFLIMQNLSATAIHGDRTQAERERALAFFRTGRANVLVATA 460

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A
Sbjct: 461 VAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGLA 502


>gi|1054723|emb|CAA31405.1| vasa [Drosophila melanogaster]
          Length = 661

 Score =  229 bits (583), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 124/361 (34%), Positives = 209/361 (57%), Gaps = 8/361 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++  V  +G+  PTPIQ  +IP++    D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 247 FTSADLRDIIIDNVNKSGFKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSK 306

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L +    + +  P+ +I+ PTRELA Q+ +   K+     L + ++ GG  F  QN+ + 
Sbjct: 307 LLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECIT 366

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TR 178
           RG  V+I TPGR+LD  +R  +   +   +V+DEADRMLDMGF   ++ I + V      
Sbjct: 367 RGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEH 426

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT  +E+Q+++  FL+N   + +         ++   +    +Y+K+  L++ L
Sbjct: 427 QTLMFSATFPEEIQRMAGEFLKNYVSVAIGIVGGACSDVKQT-IYEVNKYAKRSKLIEIL 485

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +  D     I+F   K+    L   L ++ F   +IHG+  Q  R + L +FK G++++
Sbjct: 486 SEQADGT---IVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKV 542

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+ +A+RGLDI ++ HV N+D+P++ ++Y+HRIGRTG  G +G+A +    E  + I 
Sbjct: 543 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGCVGNNGRATSFFDPEKDRAIA 602

Query: 359 A 359
           A
Sbjct: 603 A 603


>gi|145257496|ref|XP_001401758.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Aspergillus
           niger CBS 513.88]
 gi|143359821|sp|A2QIL2|PRP28_ASPNC RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|134058672|emb|CAK38656.1| unnamed protein product [Aspergillus niger]
          Length = 810

 Score =  229 bits (583), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 123/367 (33%), Positives = 197/367 (53%), Gaps = 34/367 (9%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-------EKGRARVRM 72
           GY +PTPIQ   IP+ +Q  D+ G+A TG+GKTA+F+LP+L  +       E    +   
Sbjct: 391 GYKEPTPIQRAAIPIAMQNRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKADG 450

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
           P  ++L PTRELA Q+    +K+       V  ++GG   E Q   L  GA+++I TPGR
Sbjct: 451 PYAIVLAPTRELAQQIEIEAKKFTGPLGFNVVSIVGGHSLEEQAYSLRDGAEIIIATPGR 510

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--------------- 177
           ++D   R  L+++    +++DEADRM+D+GF   +  I   +P +               
Sbjct: 511 LVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDSEDAENPLAM 570

Query: 178 -----------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                      RQT++++ATM   +++++  +L+ P  + + +     +T+E   V   A
Sbjct: 571 SRHINHDQHRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVDTVEQR-VEMIA 629

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              K+   L  +L S +     I+F N K+N   +   +++ GFS   +HG+  Q  R  
Sbjct: 630 GEDKRKKRLGDILSSGEFRAPIIVFVNIKRNCDAIAREIKQWGFSSVTLHGSKTQDQREA 689

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L++ + GT  ++VA+DLA RG+D+PDV  V NF++    E+Y HRIGRTGRAG+ G A 
Sbjct: 690 ALASVRNGTTDVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRIGRTGRAGKSGVAI 749

Query: 347 TLVAKED 353
           T +  ED
Sbjct: 750 TFLGNED 756


>gi|224065635|ref|XP_002301895.1| predicted protein [Populus trichocarpa]
 gi|222843621|gb|EEE81168.1| predicted protein [Populus trichocarpa]
          Length = 1112

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 134/381 (35%), Positives = 209/381 (54%), Gaps = 15/381 (3%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--- 63
           GL+ K++  +    Y KP  IQ + +P+++   D  GIA+TG+GKT +FVLPML  +   
Sbjct: 478 GLTSKILETIKKLNYEKPMTIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQ 537

Query: 64  ---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E G      P  L++ PTREL  Q+  + +K+ K  ++    + GG     Q  +L+
Sbjct: 538 PPVEAGEG----PIGLVMAPTRELVQQIHSDIKKFAKALSIRCVPVYGGSGVAQQISELK 593

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RG ++++CTPGR++D    + GK+  +  +  LV+DEADRM DMGF P I  I   +   
Sbjct: 594 RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 653

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT   +++ ++   L  P  I+V   S   + I    V    +  +   LL+ 
Sbjct: 654 RQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQ-LVELRTEDQRWLRLLE- 711

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL         +IF   +    +L  +L K G+   ++HG  DQ  R   +S+FK     
Sbjct: 712 LLGEWYQKGKILIFVQSQDKCDSLFRNLLKFGYPCLSLHGAKDQTDRESTISDFKTNVCN 771

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           LM+A+ +AARGLD+ D+  V N+D PN  E+Y+HR+GRTGRAGR G A T ++++D ++ 
Sbjct: 772 LMIATSVAARGLDVKDLELVINYDAPNHYEDYVHRVGRTGRAGRKGCAITFISEDDARYA 831

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K +E     +  DL +L
Sbjct: 832 PDLVKALELSEQVVPQDLKAL 852


>gi|302754310|ref|XP_002960579.1| hypothetical protein SELMODRAFT_164382 [Selaginella moellendorffii]
 gi|302771598|ref|XP_002969217.1| hypothetical protein SELMODRAFT_91413 [Selaginella moellendorffii]
 gi|300162693|gb|EFJ29305.1| hypothetical protein SELMODRAFT_91413 [Selaginella moellendorffii]
 gi|300171518|gb|EFJ38118.1| hypothetical protein SELMODRAFT_164382 [Selaginella moellendorffii]
          Length = 401

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 205/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G++  ++  V + G+ +P+ IQ + +  +++  DV   AQ+GTGKT+   + +  +
Sbjct: 30  FEKMGINESLLRGVFEYGFERPSAIQQRALIPIMRGRDVIAQAQSGTGKTSMIGIAVNQL 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q A      G + N+     IGG  F    +KLE G
Sbjct: 90  IDTS---VREVQALVLSPTRELADQTAKVVLTLGSHMNVQAHTCIGGKSFSEDIRKLEHG 146

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R      +++ILV+DE+D ML  GF   I +    +P   Q +L
Sbjct: 147 VHVVSGTPGRVYDMLKRRTFRTRHVKILVLDESDEMLSRGFKEQIIDCYRYLPPDLQVVL 206

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 207 VSATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL- 265

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   +    F+V ++HG + Q+ R  I+  F+EG  +++
Sbjct: 266 ----TITQAVIFCNTKRKVEWLSEKMRSSNFTVSSMHGEMPQKERDTIMKEFREGQTRVL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 322 ITTDVWARGLDVQQVSLVINYDLPNSRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRD 381

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    +VD +  +++ L
Sbjct: 382 IEQYYSTQVDEMPMNVADL 400


>gi|198413153|ref|XP_002124718.1| PREDICTED: similar to GE24123 [Ciona intestinalis]
          Length = 573

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 133/383 (34%), Positives = 206/383 (53%), Gaps = 15/383 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF++L  S  +   +  + +  PT IQ    P  L   DV GIAQTG+GKT SF+LP L
Sbjct: 146 LDFSELQFSDHIDSKLRQSNFNVPTAIQSTGWPATLSGRDVIGIAQTGSGKTLSFILPAL 205

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             ++  R   R   P  L++ PTRELA Q      ++   + +  A   GG     Q  K
Sbjct: 206 IHIQAQRPLGRGEGPIALVMCPTRELAVQCERVANQFAGPF-IRTACAYGGSSRNIQLDK 264

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +  G  +L+ TPGR++D    G++ +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 265 IGAGCSILVATPGRLMDFLQHGEVNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 324

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS---TAETIEHCFVATYA-----QYSK 230
           Q  ++SAT   E+++++++F+       +   SS    +E I+  F   ++     Q+ +
Sbjct: 325 QVTMWSATWPSEIRQLAKDFISTKSATHIKVGSSDLQASENIQQKFAICHSPDKFKQFKE 384

Query: 231 KCALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
               L+   + Q       ++FCN K     L   L   G    AIHG+  Q  R  +L+
Sbjct: 385 IIIELKNANKDQFSQFPKTLVFCNTKATCDRLSQQLRNAGLRSNAIHGDKTQSQRDSVLN 444

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           NF+ G   +++A+D+AARGLDI D+ +V NFD P    +YIHRIGRTGRAG+ G ++TL+
Sbjct: 445 NFRRGRSNILIATDVAARGLDINDIQYVINFDTPPTCTDYIHRIGRTGRAGKQGTSYTLL 504

Query: 350 AKED---IKHIDAIEKLIEKKVD 369
            +E+   +K + +  ++I  +VD
Sbjct: 505 TEENGAIVKDLISSLEVINHEVD 527


>gi|221059537|ref|XP_002260414.1| helicase [Plasmodium knowlesi strain H]
 gi|193810487|emb|CAQ41681.1| helicase, putative [Plasmodium knowlesi strain H]
          Length = 528

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 147/430 (34%), Positives = 224/430 (52%), Gaps = 25/430 (5%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-I 62
           + +G    V+ ++ +   V PTPIQI+  P+ L   D+ G A+TG+GKT +F+LP    I
Sbjct: 116 SKIGFPDYVLKSLKNNNIVTPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHI 175

Query: 63  LEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L +   +    P  L+L PTRELA Q+     K+     +      GG+P   Q   L++
Sbjct: 176 LAQPSLKYGDGPIVLVLAPTRELAEQIRQECVKFSVESKIRNTCAYGGVPKSGQIYALKQ 235

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +LI  PGR++D   +    +  +  LV+DEAD+MLDMGF   I+ I   +   RQTL
Sbjct: 236 GVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFEIQIRKIVEQIRPDRQTL 295

Query: 182 LFSATMTDELQKVSENFL-QNPKRIEVNTPSSTA---ETIEHCFVATYAQYSKKCALLQQ 237
           ++SAT   E+Q ++ +   Q P  + V + + TA      E   +  + + +    LLQ+
Sbjct: 296 MWSATWPKEVQSLARDLCKQQPIHVNVGSLTLTACRRIKQEIYLIEEHEKIANLKLLLQR 355

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + +  D +   I+F   KKN   +  +L   G     IHG+  Q  R  +L++FK G   
Sbjct: 356 IFRDNDRI---IVFVETKKNADFITKALRLDGVPALCIHGDKKQDERRWVLNDFKTGKSP 412

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLDI DV +V NFD PN+ E+Y+HRIGRTGRAG HG +FT +  +     
Sbjct: 413 ILIATDVASRGLDIKDVKYVVNFDFPNQIEDYVHRIGRTGRAGAHGASFTFLTSDKY--- 469

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
               +L    V  L      + P LEKI     N+ R+N        G+ R   N ++  
Sbjct: 470 ----RLARDLVKILRESEQPVPPQLEKISYTSANNPRRN-----PYYGYGRSSHNVNN-- 518

Query: 418 SHIPLKESEK 427
             IPLK S +
Sbjct: 519 --IPLKGSNR 526


>gi|312376439|gb|EFR23520.1| hypothetical protein AND_12717 [Anopheles darlingi]
          Length = 696

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 141/407 (34%), Positives = 224/407 (55%), Gaps = 16/407 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + G   +++  +  AG+  PTPIQ +  P+ L   D+ GIA+TG+GKT S+++P L  
Sbjct: 98  FEESGFPAEIIDELRYAGFTAPTPIQAQGWPIALSGRDMVGIAKTGSGKTLSYLIPALIH 157

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +++ + R+R    P  LIL PTRELA Q+    + +G+        L GG     Q + L
Sbjct: 158 IDQ-QPRLRRGDGPIALILSPTRELAQQIKQVADDFGRALKYKNTCLFGGGKKRKQQEDL 216

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G +++I TPGR++D  +  +  +     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 217 EYGVEIVIATPGRLIDFLSMNQTNLRRCSYLVLDEADRMLDMGFEPQIRTIIEQIRPDRQ 276

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCAL 234
           TL++SAT  D + ++ +++L++  +I V +    A     + I+ C      + SK   L
Sbjct: 277 TLMWSATWPDVVARLVKDYLKDYVQINVGSLKLAANHNILQIIDVC--QESEKESKLSIL 334

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L++++  ++     IIF   KK V ++   +++ G+    IHG+  Q  R   L +F+ G
Sbjct: 335 LREIMAEKEC--KTIIFIETKKRVDDITRKVKRDGWPARCIHGDKSQNERDSTLKSFRSG 392

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED- 353
              +++A+D+AARGLD+ DV  V NFD P  +E+YIHRIGRTGR    G A+T     + 
Sbjct: 393 RTPILIATDVAARGLDVDDVKFVINFDFPTTSEDYIHRIGRTGRCDNTGTAYTFFTPNNA 452

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPI 399
            K  D I+ L E K   +N  L  L N  ++  D+ + +     +PI
Sbjct: 453 AKARDLIDVLKEAK-QVINPKLVELANMKVKARDLDRQSRVEDGSPI 498


>gi|170593039|ref|XP_001901272.1| DEAD [Brugia malayi]
 gi|158591339|gb|EDP29952.1| DEAD, putative [Brugia malayi]
          Length = 689

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 134/359 (37%), Positives = 196/359 (54%), Gaps = 16/359 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++   P V+ A+ D   + PT IQ++ IP+ L   D+ GIA TG+GKT +F LP++  
Sbjct: 249 FIEMKFPPPVIKALRDKKIICPTVIQMQGIPVALSGRDMIGIASTGSGKTLTFALPLIMF 308

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNY-------NLTVALLIGGI 110
             +    +       P  LI+ P+RELA Q+ D  EK  +N         L V L IGG+
Sbjct: 309 CLEQEVSLPFRHGEGPYGLIIVPSRELAKQIHDVIEKLFENICDGTKFPRLRVGLCIGGL 368

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
           P   Q +  ERG  V + TPGR+ D  ++    +     LV+DEADRMLDMGF   I+ I
Sbjct: 369 PISEQARVFERGVHVCVATPGRLSDLLSKKIFNLQVCRYLVLDEADRMLDMGFEEEIRTI 428

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q  + + L   + + VN   + A ++       Y +  +
Sbjct: 429 FSFFKGQRQTLLFSATMPRKIQNFARSALV--RAVIVNVGRAGAASLNVIQEIEYVRADE 486

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K   +   LQ   T    +IF  +K +V N+   L  +G  V ++HG  DQ+ R   +  
Sbjct: 487 KLTRILDCLQK--TAPRVLIFAEKKSDVDNIYEYLLVKGVDVASLHGGKDQKDRHTGVDA 544

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           F+ G   ++VA+D+A++GLD  ++ HV NFD+P   ENY+HRIGRTGR+GR G A T +
Sbjct: 545 FRRGEKDVLVATDVASKGLDFENIQHVINFDMPEDIENYVHRIGRTGRSGRKGMATTFI 603


>gi|22331253|ref|NP_188872.2| PMH2 (putative mitochondrial RNA helicase 2); ATP binding /
           ATP-dependent helicase/ helicase/ nucleic acid binding
           [Arabidopsis thaliana]
 gi|75335516|sp|Q9LUW5|RH53_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 53
 gi|9293867|dbj|BAB01770.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
 gi|17064852|gb|AAL32580.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
 gi|20259816|gb|AAM13255.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
 gi|332643101|gb|AEE76622.1| DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana]
          Length = 616

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 213/374 (56%), Gaps = 6/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +  ++LG+SP++V A+   G  K  PIQ   +   ++  D+ G A+TGTGKT +F +P++
Sbjct: 104 LAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 163

Query: 61  TILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             + K  A   R R P  L+L PTRELA QV   F +   +  L    L GG P   Q +
Sbjct: 164 DKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPS--LDTICLYGGTPIGQQMR 221

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L+ G DV + TPGR++D   RG L ++ ++ +V+DEAD+ML +GF   ++ I   +P  
Sbjct: 222 QLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEK 281

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+++FSATM   ++ +++ +L NP  +++   S           +  A    + +++  
Sbjct: 282 RQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGP 341

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+         I+F   K++   L ++L +  F   A+HG+I Q  R + L+ F++G   
Sbjct: 342 LVTEHAKGGKCIVFTQTKRDADRLSYALARS-FKCEALHGDISQSQRERTLAGFRDGHFN 400

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+P+V  + ++++PN  E ++HR GRTGRAG+ G A  + +++  + +
Sbjct: 401 ILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAV 460

Query: 358 DAIEKLIEKKVDWL 371
             IE+ +  +   L
Sbjct: 461 KIIEREVGSRFTEL 474


>gi|149713748|ref|XP_001501504.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2
           [Equus caballus]
          Length = 406

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 201/368 (54%), Gaps = 58/368 (15%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 26  FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRL---FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++  ++   +++  K         
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKSK--------- 252

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                                                      R+  L+ FK     +++
Sbjct: 253 -------------------------------------------RLGSLNKFKAKARSILL 269

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 270 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 329

Query: 361 EKLIEKKV 368
           E LI KK+
Sbjct: 330 EHLIGKKL 337


>gi|71756053|ref|XP_828941.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70834327|gb|EAN79829.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
 gi|261334867|emb|CBH17861.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 401

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 127/372 (34%), Positives = 206/372 (55%), Gaps = 12/372 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   GY KPT IQ + +   LQ  D+   A +G+GKT++F +    +
Sbjct: 31  FEAMGLKKDLLHGMYGYGYKKPTAIQKRFVAPFLQSRDLVAQASSGSGKTSAFCI---CL 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     +R  + L+L PTRELA Q  D     G    ++    IGG   E   ++LE G
Sbjct: 88  LQASEPTLRETQGLVLSPTRELALQTQDLCNNIGHYMGISAYAAIGGKSIEDDLRRLESG 147

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L +N+++ LV+DEAD ML  GF   I +I  ++P   Q +L
Sbjct: 148 VQIVSGTPGRVFDMIKRRHLRVNHLKTLVLDEADEMLGKGFKAQIHDIYRMIP-PLQVVL 206

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK---KCALLQQLL 239
            SAT+  ++  ++E F+  P RI V     T ++I   FV+   + +K    C L   L 
Sbjct: 207 VSATLPVDVLDMTEKFMTEPVRILVKRDEITVDSIMQYFVSVDEEKNKFDTLCDLYDTL- 265

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+ + +IFCN +K V  L   + K+ F+V  +HG++ Q  R +I+ NF+EG  +++
Sbjct: 266 ----TIAHAVIFCNTRKKVEQLAKKMTKEKFTVSFMHGDMPQAERDEIMRNFREGKSRVL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++DL +RG+D+  +  V N+D+P   E YIHRIGRTGR GR G A + V  ++++ +  
Sbjct: 322 ISTDLWSRGIDVEQISLVLNYDLPFSREQYIHRIGRTGRMGRKGLAISFVKHDELRLLRD 381

Query: 360 IEKLIEKKVDWL 371
           IE+    +++ L
Sbjct: 382 IEQFYATQIEEL 393


>gi|332374708|gb|AEE62495.1| unknown [Dendroctonus ponderosae]
          Length = 470

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 136/372 (36%), Positives = 210/372 (56%), Gaps = 9/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ L L   +V      G  +PTPIQ   IP +L+     G A+TG+GKT +F LP++ 
Sbjct: 7   NFSQLKLQNWIVKQCHSIGVKRPTPIQANCIPKILEGKTCIGAAKTGSGKTLAFALPIVQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    +     L+L P RELA Q+AD F   GK  N+   +++GG+    Q ++L +
Sbjct: 67  KLYEDPYGIY---ALVLTPIRELAFQIADQFAILGKPMNMRTCVVVGGMDMVEQGRQLSK 123

Query: 122 GADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR++DH        ++ I+ LVIDEADR+L   F   I+ I S++P TRQ+
Sbjct: 124 VPHVVVATPGRLVDHLEGCDTFTLSRIKFLVIDEADRLLGGLFDDQIKRIFSVLPKTRQS 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE----TIEHCFVATYAQYSKKCALLQ 236
           + FSATMTD LQ + +   ++    E   PS        T ++     Y + +    LL+
Sbjct: 184 IYFSATMTDTLQTLKKLVAEDAFFYEDIGPSEAVTVAGLTQQYMLCPAYVKDAYLVELLR 243

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             + S++     +IF N  KN   L  +L + G    A+H  I Q  R+  L+ FK   +
Sbjct: 244 IFI-SENDQGTVMIFTNTCKNCQLLSITLNEVGMDNVALHAMIPQAQRLAALNRFKSNRV 302

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++A+D+A+RGLDIP+V  + N +VP   + Y+HR+GRT RAGR G+A TLV   D+K 
Sbjct: 303 KILIATDVASRGLDIPNVQLIINHNVPRIPKEYVHRVGRTARAGRQGRAVTLVTPYDLKL 362

Query: 357 IDAIEKLIEKKV 368
           + AIE+LI+ K+
Sbjct: 363 LLAIEELIKTKL 374


>gi|328772256|gb|EGF82294.1| hypothetical protein BATDEDRAFT_34342 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 741

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 129/352 (36%), Positives = 188/352 (53%), Gaps = 1/352 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  V+ ++   GYV+PT IQ + IPL LQ  D+CG A TG+GKTA+F++P++  
Sbjct: 189 FQSLQLSRPVLKSIAALGYVRPTDIQARAIPLALQGRDICGSAVTGSGKTAAFIIPIVER 248

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L          R LIL PTREL  Q         K  +++  L +GG+P + Q  +L   
Sbjct: 249 LLFRPKNDATTRVLILVPTRELGVQCQSVAISISKFTDISTCLCVGGLPTKTQEAELRLR 308

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR++DH  N     ++ I+ILVIDEADR+LD GF   +  I    P TRQT+
Sbjct: 309 PDIIIATPGRLIDHIHNSPSFFLDAIDILVIDEADRILDDGFDAELNEIIKHTPRTRQTM 368

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMTD +  + +  L  P R+ V+  +     +   F+            +   L S
Sbjct: 369 LFSATMTDNVDDLIKLSLNRPVRLFVDQNTKLTNRLVQEFIRVRGHKETSRPAILAALCS 428

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      I+F   K    ++       G     +HGN+ Q  R++ L  F+E  +  ++A
Sbjct: 429 RTYTSETIVFFRSKAAAHHMKIIFGFLGLKAAELHGNLTQLQRLEALELFREKKVGFLLA 488

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +DLA+RGLDI  V  V N+D+P     Y+HR+GRT R    G+A +LV + D
Sbjct: 489 TDLASRGLDISGVKTVINYDMPKSYSIYVHRVGRTARGDLAGRAVSLVGEAD 540


>gi|73997169|ref|XP_866840.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
           isoform 2 isoform 2 [Canis familiaris]
          Length = 407

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 201/368 (54%), Gaps = 58/368 (15%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 26  FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRL---FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++  ++   +++  K         
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKSK--------- 252

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                                                      R+  L+ FK     +++
Sbjct: 253 -------------------------------------------RLGSLNKFKAKARSILL 269

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 270 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 329

Query: 361 EKLIEKKV 368
           E LI KK+
Sbjct: 330 EHLIGKKL 337


>gi|2558535|emb|CAA72735.1| RNA helicase (DEAD box) [Danio rerio]
          Length = 700

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 147/430 (34%), Positives = 232/430 (53%), Gaps = 31/430 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 261 MTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 320

Query: 61  T-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
              +  G A      ++ P  +I+ PTREL  Q+     K+     +   ++ GGI    
Sbjct: 321 QRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGY 380

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +++ +G +VL  TPGR+ D   RGK+ ++ +  LV+DEADRMLDMGF P ++ + +  
Sbjct: 381 TIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEPEMRKLVASP 440

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +++Q+++ +FL+ +   + V         +E   V    QYS
Sbjct: 441 GMPSKEKRQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQV-DQYS 499

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL+ LL++    +  ++F   K++   +   L ++  S  +IHG+ +QR R K LS
Sbjct: 500 KRDQLLE-LLRATGNERT-MVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALS 557

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G   ++VA+ +AARGLDI  V HV NFD+P+  + Y+HRIGRTGR G  G+A +  
Sbjct: 558 DFRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFF 617

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             E      +   L    V  L+G    +   LE++  + H            +TGF+ R
Sbjct: 618 NPE------SDTPLARSLVKVLSGAQQVVPKWLEEVAFSAHG-----------TTGFNPR 660

Query: 410 KKNYSSQKSH 419
            K ++S  S 
Sbjct: 661 GKVFASTDSR 670


>gi|296190482|ref|XP_002743273.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Callithrix
           jacchus]
          Length = 437

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 130/370 (35%), Positives = 201/370 (54%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 40  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVTAQSQSGTGKTATFNISVLQC 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 100 LD---IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHTCIGGTNVGEDIRKLDYG 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D      L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 157 QHVVAGTPGRVFDMIRGRSLRTCAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 217 ISATLPHEILEMTNKFMTDPVRILVKRDKLTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 275

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V +IHG++ Q+    I+  F+ GT Q++
Sbjct: 276 ----TITQVVIFCNTKRKVDWLTEKMREANFTVSSIHGDMPQKEWESIMKEFRAGTSQVL 331

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARGLD+P V  +  +D+ N  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 332 ISTDVWARGLDVPQVSLIITYDLTNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 391

Query: 360 IEKLIEKKVD 369
           IE+    ++D
Sbjct: 392 IEQYYSTQID 401


>gi|198456267|ref|XP_001360280.2| GA15282 [Drosophila pseudoobscura pseudoobscura]
 gi|198135552|gb|EAL24855.2| GA15282 [Drosophila pseudoobscura pseudoobscura]
          Length = 785

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 208/368 (56%), Gaps = 2/368 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP L  
Sbjct: 159 FYQMNLSRPLMRAIGVLGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTLER 218

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +      + R L+L PTREL AQV    ++  +  ++ V L IGG+  +AQ   L +
Sbjct: 219 LLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQ 278

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I +    TRQT
Sbjct: 279 NPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQT 338

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM+++++ ++   L  P ++ VN     A  +   F+            +   L 
Sbjct: 339 MLFSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLI 398

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F   KK    L   L   G     +HGN+ Q+ R++ L  FKE  I +++
Sbjct: 399 CRTFHDHCMVFVQTKKQAHRLHILLGLLGIRAGELHGNLTQQQRLESLKKFKEEQIDVLI 458

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  I
Sbjct: 459 ATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDI 518

Query: 361 EKLIEKKV 368
            K  E  +
Sbjct: 519 IKNAESTI 526


>gi|253744998|gb|EET01115.1| ATP-dependent RNA helicase [Giardia intestinalis ATCC 50581]
          Length = 625

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 160/481 (33%), Positives = 234/481 (48%), Gaps = 52/481 (10%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M +  L LS  +  AVL  G+  PT +Q K IP+VL   D    A TG+GKT +F +P+L
Sbjct: 1   MSWQGLSLSRPLTRAVLRLGWKFPTTVQEKVIPIVLAGRDALVSAVTGSGKTGAFGIPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +            L+L PTRELAAQ A   ++     N  V LLIGG     Q  +L 
Sbjct: 61  ERMVLRGKDTYGTTALVLSPTRELAAQTAAVLQELAYFTNFRVYLLIGGTDTAKQAAQLR 120

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+++ TPGR++D   N     ++ IE+LV+DE D+MLD+GF   ++ I +L P  RQ
Sbjct: 121 TEPDIIVATPGRLIDLVRNTVNFSLDTIEVLVLDEGDKMLDIGFHDELKEICTLCPVARQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC------- 232
           TLLFSATM  E+   S   LQ P +++++ P + A+TI   FV       +KC       
Sbjct: 181 TLLFSATMQKEVLSFSLLALQKPLQVQIDPPRTVAQTITQEFVMVTPALLRKCTEKFRNE 240

Query: 233 -------------------ALLQQLLQSQDTMKNGIIFCNQKKNVVN---LCHSLEKQ-- 268
                              ALL+    S+D+    ++FCN K+ V     L   L KQ  
Sbjct: 241 DSALKASTISTIARDILLVALLRNNFSSEDSQHKIMVFCNSKREVRRVFILLDMLTKQPE 300

Query: 269 ---------GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
                    G     +HG+  Q+ R   L  F+ G I L+V SD+A+RGLDI +V  V  
Sbjct: 301 DTTRSCLLNGIKPSCLHGDSSQKERATELDRFRSGDINLLVCSDVASRGLDIENVTVVIQ 360

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           +D P   + +IHR+GRTGRA   G + T V      H +A E+ + K++     + +   
Sbjct: 361 YDFPLSLDIHIHRVGRTGRADMPGTSITFV------HDNAQEQGVLKEIQDSQKERAKGQ 414

Query: 380 PPLE-KID---IAQHNHARKNNPIPQK-STGFDRRKKNYSSQKSHIPLKESEKISKLQQD 434
           P  + KID   IA   H   +N +P +     D+     + Q   I +K +E I + + +
Sbjct: 415 PLRQRKIDPKLIATVTHYFAHNSVPDRLKRRVDKMNLEMAVQMEEIKIKRAENIMEFKDE 474

Query: 435 I 435
           I
Sbjct: 475 I 475


>gi|193669397|ref|XP_001951491.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Acyrthosiphon
           pisum]
          Length = 401

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 207/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L   +V  +   G+ +P+ IQ + I  +++  DV   AQ+GTGKTA+F + ML  
Sbjct: 30  FDNMKLREDLVRGIYSYGFERPSAIQQRAIKPMIKGRDVIAQAQSGTGKTATFSIAMLQS 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++   +++R  + L L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 90  ID---SQLRDTQVLCLSPTRELAVQIQKVVLALGDYLNVQCHACIGGTNLGEDLRKLDFG 146

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L   NI+ LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 147 QHIVSGTPGRVFDMIRRKALRTRNIKTLVLDEADEMLNKGFKEQIYDVYRFLPPATQVIL 206

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 207 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 265

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 266 ----TITQAVIFCSTKRKVDWLTEKMRESNFTVSSMHGDMPQKERDAIMKEFRAGQTRVL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 322 ITTDIWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRD 381

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 382 IEQYYSTQIDEMPMNVADL 400


>gi|317494076|ref|ZP_07952492.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917849|gb|EFV39192.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 459

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 136/384 (35%), Positives = 216/384 (56%), Gaps = 10/384 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L    +  + + GY   TP+Q   +P +L+  DV   A+TG+GKTA+F + +L  
Sbjct: 5   FASLSLPAAQLENLAELGYASMTPVQAAALPAILEGRDVRAQAKTGSGKTAAFGIGLLQQ 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++  +   +    L+L PTRELA QV+    +  +   N+ +  L GG P   Q   L  
Sbjct: 65  IDVTQFTTQ---ALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPISHQLDSLVH 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI +H  +  + ++ +++LV+DEADRMLDMGF   I ++ S  P  RQTL
Sbjct: 122 APHIVVGTPGRIQEHLRKKSVSLDAMKVLVLDEADRMLDMGFADAIDDVISYTPTARQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S    + P  IE    S+  + IE  F  T ++  K   L   L   
Sbjct: 182 LFSATYPQGIERISARVQREPVTIETGDVSALPD-IEQQFYET-SRGEKLLLLQALLSNL 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q    + ++FCN K++  ++  +L  Q  SV A+HG+++QR R ++L  F   + +++VA
Sbjct: 240 QPA--SCVVFCNTKRDCQDVYDALSGQDISVLALHGDLEQRERDQVLVRFSNRSCRVLVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++  V N+++    E ++HRIGRT RAG+ G A + VA  ++    A+E
Sbjct: 298 TDVAARGLDIKELEMVVNYELSFDPEVHVHRIGRTARAGQKGLAVSFVAPSEMVRAHALE 357

Query: 362 KLIEKKVDWLNGDLSSLNP--PLE 383
             I  K +WL+ D    +P  PLE
Sbjct: 358 DYIGLKPNWLSADKMMASPMKPLE 381


>gi|153827809|ref|ZP_01980476.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           623-39]
 gi|148876654|gb|EDL74789.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           623-39]
          Length = 428

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/374 (35%), Positives = 205/374 (54%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A L     +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 23  MSFSSLALSADLIQA-LPKAITEPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++   + G    L    L GG+    Q   L 
Sbjct: 82  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKAEQQNALA 137

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 138 ENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQALASQTATVRQT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 197 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK G+ Q+++
Sbjct: 256 HQ--WPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLI 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 314 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAI 373

Query: 361 EKLIEKKVDWLNGD 374
             L ++++   N D
Sbjct: 374 RTLTQRQLPVQNLD 387


>gi|120537661|gb|AAI29276.1| Vasa protein [Danio rerio]
          Length = 688

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 147/430 (34%), Positives = 232/430 (53%), Gaps = 31/430 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 249 MTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 308

Query: 61  T-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
              +  G A      ++ P  +I+ PTREL  Q+     K+     +   ++ GGI    
Sbjct: 309 QRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGY 368

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +++ +G +VL  TPGR+ D   RGK+ ++ +  LV+DEADRMLDMGF P ++ + +  
Sbjct: 369 TIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEPEMRKLVASP 428

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +++Q+++ +FL+ +   + V         +E   V    QYS
Sbjct: 429 GMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQV-DQYS 487

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL+ LL++    +  ++F   K++   +   L ++  S  +IHG+ +QR R K LS
Sbjct: 488 KRDQLLE-LLRATGNERT-MVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALS 545

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G   ++VA+ +AARGLDI  V HV NFD+P+  + Y+HRIGRTGR G  G+A +  
Sbjct: 546 DFRLGQCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFF 605

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             E      +   L    V  L+G    +   LE++  + H            +TGF+ R
Sbjct: 606 NPE------SDTPLARSLVKVLSGAQQVVPKWLEEVAFSAHG-----------TTGFNPR 648

Query: 410 KKNYSSQKSH 419
            K ++S  S 
Sbjct: 649 GKVFASTDSR 658


>gi|326795324|ref|YP_004313144.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326546088|gb|ADZ91308.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 403

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 206/371 (55%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   +  A+ D G   PTPIQI+ IP  L   D+   A TGTGKT +F  P++
Sbjct: 1   MSFEDLDLDFTIEQAISDMGLTSPTPIQIQAIPAALDAQDILASAPTGTGKTIAFAAPII 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             IL++       P+ LIL P+RELA Q+    EK   +  + + L++GG P+  Q K+L
Sbjct: 61  QHILDRDEESTLAPKALILAPSRELARQIFQVIEKLLTHTRIQLQLIVGGTPYGNQQKQL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+L+ TPGR+++   +G L ++++ + VIDEADRMLDMGFI  + +I   +P   Q
Sbjct: 121 SEPCDILVATPGRLIELDQKGWLDLSDVSMFVIDEADRMLDMGFIDAVTSIAKELP-AHQ 179

Query: 180 TLLFSATMTDE-LQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           TL FSAT+  E + + +   L ++  +I+++    +  +              K ALL+ 
Sbjct: 180 TLFFSATIEGEKMGRFASTLLKEDATQIQLSESVRSVPSQITQLAMRVDDEPHKEALLKH 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+  +T     +F + K +V      +   G     +HG++ Q  R   L   K+G ++
Sbjct: 240 ILEKDET-NQAAVFVSNKDHVDIWVQKIRNWGLRCDGLHGDMKQGDRNDHLKQMKKGRLK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A+RGLD+P++  V N  +P +A+ Y+HR GR  R G  GK ++LV   D+  +
Sbjct: 299 VLVATDVASRGLDLPEINTVINVRLPRKADAYVHRAGRASREGNPGKCYSLVDINDLPMM 358

Query: 358 DAIEKLIEKKV 368
           + I++ ++  V
Sbjct: 359 EKIQRYMQVAV 369


>gi|215788934|gb|ACJ69403.1| Vasa [Botryllus schlosseri]
          Length = 547

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 131/359 (36%), Positives = 200/359 (55%), Gaps = 15/359 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L   V   VL +GY KPTP+Q  +IP+V    D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 94  FDDAKLPDTVGQNVLKSGYEKPTPVQKYSIPIVNNNRDLMACAQTGSGKTAAFLLPVLSG 153

Query: 63  LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           + +         +  + P+ +++ PTREL  Q+     K+ +   +   ++ GG    +Q
Sbjct: 154 MFRNGLKSADSFSESQTPQAIVVGPTRELVNQIYIEARKFARGTMIQPVVVYGGTSVRSQ 213

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG ++LI TPGR+LD  +RGK+    +E +++DEADRMLDMGF P I+ +     
Sbjct: 214 LANLSRGCNMLIATPGRLLDFIDRGKVSCECVEYIILDEADRMLDMGFEPEIRRLLGAPG 273

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYSK 230
                TR TL+FSAT  D++QK++  FL++    + V         +    +     +S+
Sbjct: 274 MPDKNTRHTLMFSATSPDDIQKLAHEFLRDDFLFLTVGRVGGACSDVTQAMIQI--DHSE 331

Query: 231 KCALLQQLLQSQDTMK-NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K   L +LL    T K   ++F + K+N   L     ++     +IHG+  QR R   L 
Sbjct: 332 KRDKLMELLSDVPTTKARTLVFVDTKRNADFLATLPSQENLPTTSIHGDRQQREREMALV 391

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +FK GT  +++A+ +AARGLDIP V HV N+D+P+  + Y+HRIGRTGR G  G A + 
Sbjct: 392 DFKNGTCPILIATSVAARGLDIPKVEHVINYDLPSEIDEYVHRIGRTGRCGNLGTATSF 450


>gi|312082520|ref|XP_003143478.1| ATP-dependent RNA helicase DDX41 [Loa loa]
 gi|307761359|gb|EFO20593.1| ATP-dependent RNA helicase DDX41 [Loa loa]
          Length = 657

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 134/359 (37%), Positives = 196/359 (54%), Gaps = 16/359 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++   P V+ A+ D   + PT IQ++ IP+ L   D+ GIA TG+GKT +F LP++  
Sbjct: 217 FIEMKFPPPVIKALRDKKIICPTVIQMQGIPVALSGRDMIGIASTGSGKTLTFALPLVMF 276

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNY-------NLTVALLIGGI 110
             +    +       P  LI+ P+RELA Q+ D  EK  +N         L V L IGG+
Sbjct: 277 CLEQEVSLPFRHGEGPYGLIIVPSRELAKQIHDVIEKLFENICDGTKFPRLRVGLCIGGL 336

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
           P   Q +  ERG  V + TPGR+ D  ++    +     LV+DEADRMLDMGF   I+ I
Sbjct: 337 PISEQARVFERGVHVCVATPGRLSDLLSKKIFNLQVCRYLVLDEADRMLDMGFEEEIRTI 396

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q  + + L   + + VN   + A ++       Y +  +
Sbjct: 397 FSFFKGQRQTLLFSATMPRKIQNFARSALV--RAVIVNVGRAGAASLNVVQEIEYVRADE 454

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K   +   LQ   T    +IF  +K +V N+   L  +G  V ++HG  DQ+ R   +  
Sbjct: 455 KLTRILDCLQK--TAPRVLIFAEKKNDVDNIYEYLLVKGVDVASLHGGKDQKDRHTGVDA 512

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           F+ G   ++VA+D+A++GLD  ++ HV NFD+P   ENY+HRIGRTGR+GR G A T +
Sbjct: 513 FRRGEKDVLVATDVASKGLDFENIQHVINFDMPEDIENYVHRIGRTGRSGRKGMATTFI 571


>gi|46124943|ref|XP_387025.1| hypothetical protein FG06849.1 [Gibberella zeae PH-1]
 gi|91207408|sp|Q4I7F9|PRP28_GIBZE RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
          Length = 721

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 127/396 (32%), Positives = 212/396 (53%), Gaps = 35/396 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  L  +++  V D GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L  
Sbjct: 290 WQESNLPQRLLNIVDDVGYKDPSPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVY 349

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +        +     P  LI+ PTREL  Q+     K+       V  ++GG   E Q  
Sbjct: 350 ISDLPPLDEINKHDGPYALIMAPTRELVQQIETEARKFAGPLGFRVVSIVGGHQIEEQAY 409

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GA++++ TPGR+LD   R  L+++    +++DEADRM+D+GF   +  I   +P T
Sbjct: 410 NLRDGAEIVVATPGRLLDCIERRLLVLSQCCYVIMDEADRMIDLGFEESVNKILDALPVT 469

Query: 178 -------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS 212
                                    RQT++++ATM   ++++++ +L+ P  + +     
Sbjct: 470 NEKPDTDEAENAQIMQRYLGGRDRYRQTMMYTATMPPLVERIAKKYLRRPAIVTIGNAGE 529

Query: 213 TAETIEHC--FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
             +T+E    FV+   +  K+   LQ++L S +     I+F N K+N   +   +++ G+
Sbjct: 530 AVDTVEQRVEFVSGEDRRKKR---LQEILSSGNFGPPIIVFVNIKRNCDAVARDIKQMGW 586

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L + + G  Q++VA+DLA RG+D+PDV  V NF++    E+Y 
Sbjct: 587 SAVTLHGSKTQEQREAALGSVRAGHTQVLVATDLAGRGIDVPDVSLVVNFNMATNIESYT 646

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           HRIGRTGRAG+ G A T +  ED + +  +++++ K
Sbjct: 647 HRIGRTGRAGKSGVAITFLGPEDHETMYDLKQILSK 682


>gi|195431333|ref|XP_002063697.1| GK15774 [Drosophila willistoni]
 gi|194159782|gb|EDW74683.1| GK15774 [Drosophila willistoni]
          Length = 792

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 140/395 (35%), Positives = 216/395 (54%), Gaps = 12/395 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP L  
Sbjct: 161 FYQMNLSRPLMRAIGVLGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTLER 220

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +      + R L+L PTREL AQV    ++  +  ++ V L IGG+  +AQ   L +
Sbjct: 221 LLYRPLNNKTITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQ 280

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I +    TRQT
Sbjct: 281 NPDIVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQT 340

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM+++++ ++   L  P ++ VN     A  +   F+            +   L 
Sbjct: 341 MLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLI 400

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F   KK    L   L         +HGN+ Q+ R++ L  FKE  I +++
Sbjct: 401 CRTFHDHCMVFVQTKKQAHRLHILLGLLNVRAGELHGNLTQQQRLESLKKFKEEQIDVLI 460

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  I
Sbjct: 461 ATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDI 520

Query: 361 EKLIEKKV----------DWLNGDLSSLNPPLEKI 385
            K  E  V          +     L++L P ++ I
Sbjct: 521 IKNAESSVKNRIIPPEIIEKYRNKLTALEPEIQNI 555


>gi|317128977|ref|YP_004095259.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315473925|gb|ADU30528.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 482

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/385 (34%), Positives = 211/385 (54%), Gaps = 18/385 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  +  A+    Y + T +Q + +PL L+  D+   + TG+GKTA+F +P   I
Sbjct: 6   FTELGLSDVINKAIHALNYYELTDVQKEVLPLSLENKDLIVKSPTGSGKTAAFAIP---I 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E+       P+ L+L PTRELAAQV + F   G+   +    + G  PF+ Q  +L++ 
Sbjct: 63  CEQVTWDENSPQALVLTPTRELAAQVKEEFMNIGRLKRIKALAIYGKQPFDRQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS-LVPFTRQTL 181
             V++ TPGR+LDH  +G L MN I+ LVIDEAD M + GF   + +I   L  + + T 
Sbjct: 123 THVVVGTPGRLLDHLQKGTLKMNKIKYLVIDEADEMFNRGFFDQVDSILKHLANYDKVTS 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ--LL 239
           ++SAT+++ ++ +S  F+ NP +I +      A  I   +V      + K + +Q   ++
Sbjct: 183 IYSATISEAVEHISTRFMINPIKINIERKQINAHPISQSYV--LVNKNAKFSAIQDVTIV 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++ D+    I+FC  + NV  L   L    +S   IHG + Q+ R  +++ FKEG  + +
Sbjct: 241 ENPDSC---IVFCETQVNVDKLYKQLRDANYSCGKIHGGLPQKERFSVMNEFKEGKFRYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V ++LAARG+DI  +  V N+D+P   E Y+HR GRTGRAG  GKA T +  ++      
Sbjct: 298 VTTNLAARGIDIESISLVINYDMPLDKEVYVHRTGRTGRAGNKGKAITFITPDERILFRE 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE       D++   +  +N P E+
Sbjct: 358 IE-------DYIGYAIPPMNIPSER 375


>gi|223997764|ref|XP_002288555.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975663|gb|EED93991.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 369

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 202/376 (53%), Gaps = 11/376 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           + L P ++  +   G+ KP+ IQ + I  ++   DV   +Q+GTGKTA F +  L +L++
Sbjct: 1   MNLKPTLLRGIYAYGFEKPSAIQQRAIRPIVCGRDVIAQSQSGTGKTAVFSISSLQLLDE 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
              R   P+ LIL PTRELA Q        G   N+     IGG       K L++G  V
Sbjct: 61  ---RSNDPQVLILSPTRELAEQTQRVVSSLGDFMNVKCHACIGGKSLGEDRKVLQQGVQV 117

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           L  TPGR+ D   RG L    ++  +IDEAD ML+ GF   I +I   +P   Q +L SA
Sbjct: 118 LSGTPGRVYDLIKRGDLTTRALKAFIIDEADEMLNKGFKEQIYDIYRYLPPQTQVVLVSA 177

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLLQSQ 242
           T+  E+ +++  F+ +P RI V     T E I+  FV+   +   +   C L   L    
Sbjct: 178 TLPVEVLEMTRKFMNDPIRILVKRDELTLEGIKQFFVSVEKEEWKFDTLCDLYDTL---- 233

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN K+ V  L   + +  F+V A+HG++ Q  R K++ +F+ G+ ++++A+
Sbjct: 234 -TVTQAVIFCNTKQKVDWLATKMRESNFTVAAMHGDMTQDERDKVMEDFRSGSSRVLIAT 292

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL  RG+D+  V  V  +D+P   E YIHRIGR+GR GR G A   V  ED++ +  IE+
Sbjct: 293 DLWGRGIDVQQVSLVICYDLPTNRELYIHRIGRSGRFGRKGVAINFVRTEDVRTLRDIEQ 352

Query: 363 LIEKKVDWLNGDLSSL 378
               ++D +  ++S L
Sbjct: 353 FYSTQIDEMPLNVSDL 368


>gi|195149497|ref|XP_002015694.1| GL11206 [Drosophila persimilis]
 gi|194109541|gb|EDW31584.1| GL11206 [Drosophila persimilis]
          Length = 785

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 208/368 (56%), Gaps = 2/368 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP L  
Sbjct: 159 FYQMNLSRPLMRAIGVLGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTLER 218

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +      + R L+L PTREL AQV    ++  +  ++ V L IGG+  +AQ   L +
Sbjct: 219 LLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQ 278

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I +    TRQT
Sbjct: 279 NPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQT 338

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM+++++ ++   L  P ++ VN     A  +   F+            +   L 
Sbjct: 339 MLFSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLI 398

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F   KK    L   L   G     +HGN+ Q+ R++ L  FKE  I +++
Sbjct: 399 CRTFHDHCMVFVQTKKQAHRLHILLGLLGIRAGELHGNLTQQQRLESLKKFKEEQIDVLI 458

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  I
Sbjct: 459 ATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDI 518

Query: 361 EKLIEKKV 368
            K  E  +
Sbjct: 519 IKNAESTI 526


>gi|256088555|ref|XP_002580396.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665966|emb|CAZ36635.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 1544

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 123/355 (34%), Positives = 208/355 (58%), Gaps = 11/355 (3%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++   G+S +++  +    + KPTPIQ + +P+++   D+ GIA+TG+GKT +F++P++ 
Sbjct: 851  NWVQAGISSRLLACLKRNNFDKPTPIQCQALPVIMSGRDMIGIAKTGSGKTLAFLVPLMR 910

Query: 62   ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             LE  +A +     P  L+L PTRELA Q+    +K  +  +     + GG     Q  +
Sbjct: 911  HLEH-QAPLNPGDGPIALLLAPTRELALQIFKETKKLCQAADARAVCVYGGTGISEQIAE 969

Query: 119  LERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            L+RGA++++CTPGR++D    N G++  ++    +V+DEADRM D+GF P +  I     
Sbjct: 970  LKRGAEIIVCTPGRMIDMLAANGGRVTNLHRCSYVVLDEADRMFDLGFEPQVMRIIENCR 1029

Query: 176  FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCAL 234
              RQTL+FSAT   +++ ++   L  P  I++   S     +E H F+ +  +   K   
Sbjct: 1030 PDRQTLMFSATFPRQMEILARKVLTLPIEIQIGGRSVVCSDVEQHAFILSEEEKVYKVLE 1089

Query: 235  LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            L  + Q + ++   ++F  ++++   L   L K G+   ++HG IDQ  R  ++ +FK G
Sbjct: 1090 LLGIYQEEGSV---LVFVEKQESADELMRVLLKYGYPCLSLHGGIDQYDRDSVIMDFKRG 1146

Query: 295  TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
             I+L++A+ +AARGLD+ D+  V N+D PN  E+Y+HR GRTGRAGR G A+T +
Sbjct: 1147 NIRLLIATSVAARGLDVTDLLLVINYDCPNHYEDYVHRCGRTGRAGRKGFAYTFL 1201


>gi|163788491|ref|ZP_02182937.1| inducible ATP-independent RNA helicase [Flavobacteriales bacterium
           ALC-1]
 gi|159876811|gb|EDP70869.1| inducible ATP-independent RNA helicase [Flavobacteriales bacterium
           ALC-1]
          Length = 372

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 125/351 (35%), Positives = 208/351 (59%), Gaps = 10/351 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61
           F++LG+    +  + +     PT IQ   IP++L+ + D+ G+AQTGTGKTA+F LP+L 
Sbjct: 4   FSELGIHKSYIKGLKELNIKNPTEIQETVIPILLESNTDLIGLAQTGTGKTAAFGLPVLH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKL 119
            ++K ++ V+    LI+ PTREL  Q+     ++ K  +  +    + GG   + Q K L
Sbjct: 64  AIDKNKSEVQ---ALIIAPTRELVQQIQKQLFRFTKYIDGKIFAEGVYGGEKMDRQIKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R   +++ TPGR+LD   RG + ++N++ILV+DEAD ML MGF   +  I       R 
Sbjct: 121 TRATHIVVATPGRLLDLVERGAVDISNVKILVLDEADEMLSMGFKEDLNKILKYNTKKRN 180

Query: 180 TLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           T LFSATM D+++ + +N++  +  R+EVN  +   E I H ++ T  +  K   +++ L
Sbjct: 181 TWLFSATMPDDIKSIIKNYMSPDAVRVEVNKNALVNENISHHYIQTNIK-DKLNMVIRIL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            + QD  + GIIFC  K     L   L+ +GF+V A+ G++ Q+ R K++  FK  ++Q+
Sbjct: 240 EKRQD--ERGIIFCRTKAGTKTLAQQLQHEGFAVGALEGDMQQKERDKVMRAFKNESLQI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +V++D++ARG+D+ D+  V +  +P   + Y HR GRT RAG+ G++  L+
Sbjct: 298 LVSTDVSARGIDVRDLSFVLHHQLPEHLDYYTHRSGRTARAGKTGQSIALI 348


>gi|262191754|ref|ZP_06049928.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
 gi|262032393|gb|EEY50957.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
          Length = 406

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/372 (35%), Positives = 205/372 (55%), Gaps = 9/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A L     +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 1   MSFSSLALSADLIQA-LPKEITQPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++   + G    L    L GG+    Q   L 
Sbjct: 60  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTQVGAPLGLNTLCLCGGVDKTEQQNALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 116 ENPNILVATTGRLFDLTQSG-LSLNRVTTLVLDEADRLLDMGFWPQVQALASQTASVRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 175 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 233

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK+GT Q+++
Sbjct: 234 HQ--WSQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQAQREAALAEFKDGTTQVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  A+ Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAQTYVHRVGRTARAGQQGIALSLVCHGEMDALNAI 351

Query: 361 EKLIEKKVDWLN 372
             L ++ +  LN
Sbjct: 352 RTLTQRDLLVLN 363


>gi|256088559|ref|XP_002580398.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665968|emb|CAZ36637.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 1476

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 123/355 (34%), Positives = 208/355 (58%), Gaps = 11/355 (3%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++   G+S +++  +    + KPTPIQ + +P+++   D+ GIA+TG+GKT +F++P++ 
Sbjct: 783  NWVQAGISSRLLACLKRNNFDKPTPIQCQALPVIMSGRDMIGIAKTGSGKTLAFLVPLMR 842

Query: 62   ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             LE  +A +     P  L+L PTRELA Q+    +K  +  +     + GG     Q  +
Sbjct: 843  HLEH-QAPLNPGDGPIALLLAPTRELALQIFKETKKLCQAADARAVCVYGGTGISEQIAE 901

Query: 119  LERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            L+RGA++++CTPGR++D    N G++  ++    +V+DEADRM D+GF P +  I     
Sbjct: 902  LKRGAEIIVCTPGRMIDMLAANGGRVTNLHRCSYVVLDEADRMFDLGFEPQVMRIIENCR 961

Query: 176  FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCAL 234
              RQTL+FSAT   +++ ++   L  P  I++   S     +E H F+ +  +   K   
Sbjct: 962  PDRQTLMFSATFPRQMEILARKVLTLPIEIQIGGRSVVCSDVEQHAFILSEEEKVYKVLE 1021

Query: 235  LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            L  + Q + ++   ++F  ++++   L   L K G+   ++HG IDQ  R  ++ +FK G
Sbjct: 1022 LLGIYQEEGSV---LVFVEKQESADELMRVLLKYGYPCLSLHGGIDQYDRDSVIMDFKRG 1078

Query: 295  TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
             I+L++A+ +AARGLD+ D+  V N+D PN  E+Y+HR GRTGRAGR G A+T +
Sbjct: 1079 NIRLLIATSVAARGLDVTDLLLVINYDCPNHYEDYVHRCGRTGRAGRKGFAYTFL 1133


>gi|156375300|ref|XP_001630019.1| predicted protein [Nematostella vectensis]
 gi|156217032|gb|EDO37956.1| predicted protein [Nematostella vectensis]
          Length = 411

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 207/370 (55%), Gaps = 9/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L P++   +    +  PTPIQ++++  V+   D+ G+A+TG+GKT ++ LP+  +
Sbjct: 42  FHDLNLPPELSTYLAKKNFQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSLPLCML 101

Query: 63  LEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L           P  LIL PTREL  QV  N  +           + GG+P   Q   L 
Sbjct: 102 LRTKAPSNPGDTPVALILTPTRELMQQVFMNVSEMLDVIRCPGNPVCGGVPVSTQTIALR 161

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--- 177
            GADV++ TPGR+LD   RG L ++ I  LV+DEADRML MG    ++ I  L   T   
Sbjct: 162 EGADVVVATPGRLLDLCKRGALCLDKITYLVMDEADRMLGMGMEEQLRKIVGLATGTSRA 221

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLL+SAT+ + L++++ + + NP  I+V      A +++   V  Y  Y K   LL+ 
Sbjct: 222 RQTLLWSATLPESLERLARSAVLNPITIQVGPGGLIAPSVQQNVVFLY-HYQKPQKLLET 280

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L  +       I+F +  +NV  +   L+++ F    +H    Q  R K++  F++G + 
Sbjct: 281 LRTTP--YPPVIVFTSSIQNVDYVTELLKQEQFHASGLHSEKPQDYRFKLVKAFRDGKVD 338

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A+RGLD P+V HV N+D+P+  E YIHR GRTGR G HG A + +   D K  
Sbjct: 339 ILVATDVASRGLDFPEVTHVINYDLPDTIECYIHRCGRTGRIGHHGIATSFLTL-DCKIA 397

Query: 358 DAIEKLIEKK 367
           + +++++E++
Sbjct: 398 EELKEMLERE 407


>gi|320583801|gb|EFW98014.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Pichia angusta DL-1]
          Length = 396

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 123/379 (32%), Positives = 202/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L   ++  +   G+  P+ IQ + I  V+Q  DV   AQ+GTGKTA+F + ML +
Sbjct: 25  FEEMSLKESLLKGIYAYGFEAPSAIQSRAIAQVIQGRDVIAQAQSGTGKTATFTIGMLQV 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +   +    L+L  TRELAAQ+       G    +     +GG       + L +G
Sbjct: 85  VDTSKFETQ---ALVLSTTRELAAQIRSVISALGDYMKIRCHACVGGKSVGEDIRALSKG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+LD   R  L + N+++LV+DEAD +L  GF   I  I   +P + Q ++
Sbjct: 142 QHIVSGTPGRVLDMIKRRTLSIRNVKMLVLDEADELLGKGFQDQISEIYQYLPPSTQVVV 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+   +  ++  F+ +P +I V     T E I   ++    +   +   C L   L 
Sbjct: 202 VSATLPKAVLSLTNKFMSDPVKILVKRDELTLEGINQYYIQVEKEDWKFDTLCDLYDSL- 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN KK V  L  SL K  F+V ++HG++ Q  R +++  F+ G  +++
Sbjct: 261 ----TITQAVIFCNTKKKVDWLSESLRKANFTVSSMHGDMQQDERDRVMDEFRLGNSRVL 316

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENY+HRIGR+GR GR G A   V + ++  +  
Sbjct: 317 ISTDIWARGIDVQQVSLVINYDLPYDKENYVHRIGRSGRFGRKGVAINFVTRNELGDLTE 376

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    K+D +  DLS +
Sbjct: 377 IEEFFSIKIDEMPSDLSDV 395


>gi|300771829|ref|ZP_07081700.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761215|gb|EFK58040.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 406

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 135/375 (36%), Positives = 217/375 (57%), Gaps = 9/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL+P +   +   GY+  TPIQ + IP++LQ  D+   AQTGTGKTAS++LP+L
Sbjct: 1   MKFTEFGLAPLLEEGLDSMGYLDATPIQEQAIPVILQDKDLIACAQTGTGKTASYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             +E  ++      TLIL PTRELA Q+             T   + GG   I +E Q +
Sbjct: 61  HKIEVRKSE--HVNTLILAPTRELALQIDQQIMGLAYFTGATSIAVYGGGDGIGYEQQKR 118

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +  G ++++ TPGR++ H   GK   + +E L++DEADRMLDMGF   I  I S +P  
Sbjct: 119 AIREGVNIIVATPGRLIAHMTSGKFDFSKLEHLILDEADRMLDMGFYEDILRIISYLPAK 178

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  +++ +++  L +P  I +   S  ++ I+      Y +  +K  L++ 
Sbjct: 179 RQNLLFSATMPPKIRSLAKQILHDPTEINIAI-SKPSDGIKQQAYLVYDE--QKTELIKT 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L S D+  + IIF ++K+ V  L H L+K+G +  A H +++Q  R ++++ FK   + 
Sbjct: 236 IL-SDDSYSSVIIFASKKEIVKRLTHELQKKGIAAEAFHSDLEQTQREEVMNKFKGKRLS 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+ +RG+D+  +  V N+DVP   E+Y+HR+GRT RA   G A T +  +D    
Sbjct: 295 VLVGTDVISRGIDVVGISLVINYDVPPDPEDYVHRVGRTARAATTGTAITFINTKDQNRF 354

Query: 358 DAIEKLIEKKVDWLN 372
             IE LI  +++ ++
Sbjct: 355 GRIEALIGNEIEKVS 369


>gi|66800751|ref|XP_629301.1| hypothetical protein DDB_G0293064 [Dictyostelium discoideum AX4]
 gi|60462682|gb|EAL60884.1| hypothetical protein DDB_G0293064 [Dictyostelium discoideum AX4]
          Length = 573

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 126/354 (35%), Positives = 200/354 (56%), Gaps = 7/354 (1%)

Query: 17  LDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGR-ARVRMPR 74
           L   + KPTP+Q    P+ L   D+ GI++TG+GKT SF+LP +  IL + R +    P 
Sbjct: 155 LSKKFEKPTPVQSLGWPIALSGSDMLGISKTGSGKTLSFILPAIEHILAQPRQSYYPGPS 214

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L++ PTRELA Q+    E+Y +  N+ +A + GG P  +Q  +L R   +++ TPGRI+
Sbjct: 215 VLVVAPTRELANQINQEAEQYLRLVNIEIATIYGGAPRRSQQLQLSRRPKIVVGTPGRII 274

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D    G L + NI  LV+DEADR+++MGF   I  I + +   RQ L +SAT   ++   
Sbjct: 275 DFMESGDLSLKNISFLVVDEADRLMEMGFEQQIDGIFNSIRPDRQVLYWSATWPKKVSSF 334

Query: 195 SENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQL--LQSQDTMKNGIIF 251
           +E  ++ P R+++ +   TA + I   F        K  AL+  L  + S D     +IF
Sbjct: 335 AEKHIRTPIRLQIGSSQLTANKNISQKFKIVPTDADKVDALMDTLGEIYSADEKAQTLIF 394

Query: 252 CNQKKNVVNLCHSLEKQG--FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
              KK    L H ++  G    +  +HG++DQ  R +I+ +FK   + ++VA+D+A+RGL
Sbjct: 395 TMTKKGADTLKHYIQSNGDNVRIDTLHGDVDQNRRERIVQDFKNKRLDIVVATDVASRGL 454

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           DI  + HV NF +P+  E Y+HRIGRTGRAG  G + ++++   +  ++ +  L
Sbjct: 455 DIKGISHVINFSLPSDCETYVHRIGRTGRAGALGTSHSILSNNSLDDMELVGDL 508


>gi|284034767|ref|YP_003384698.1| DEAD/DEAH box helicase domain-containing protein [Kribbella flavida
           DSM 17836]
 gi|283814060|gb|ADB35899.1| DEAD/DEAH box helicase domain protein [Kribbella flavida DSM 17836]
          Length = 554

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 125/359 (34%), Positives = 192/359 (53%), Gaps = 7/359 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL  ++V A+  AG  KP PIQ  T+P  L   DV G  +TG+GKT +FVLP++
Sbjct: 65  LTFADLGLPAELVTALAAAGVHKPFPIQAATLPDSLAGKDVLGRGRTGSGKTYAFVLPLI 124

Query: 61  TILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     R R   PR LIL PTRELA Q+  +       + L    + GG+    Q   
Sbjct: 125 ARLATSGTRRRPNQPRALILAPTRELATQIQASISPLTDAFGLRTMTVFGGVGHGPQITG 184

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+++  PGR+ DH   G   ++ +EI V+DEAD M D+GF+P ++ +    P T 
Sbjct: 185 LRKGVDIVVACPGRLEDHVKAGHAKLDAVEITVLDEADHMADLGFLPAVRRLLEATPATG 244

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT+   +  + + F+++P    V++  S    + H  +  + Q   +  +L  L
Sbjct: 245 QRLLFSATLDAGVDVLVKRFMRSPVTHSVDSAQSPVAKMTHHVL--HVQPDSRLPVLVDL 302

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +       ++F   K    +L   L  QG     +HGN+ Q +R + L  F +G+ + 
Sbjct: 303 AAAPGRT---LVFTRTKYGAKSLTKKLIAQGVPAVELHGNLSQGARTRNLEAFSDGSAKT 359

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +VA+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   TL+  + ++ +
Sbjct: 360 LVATDIAARGIHVDDVSLVIHADPPIEHKAYLHRSGRTARAGAEGTVVTLMTDDQVRDV 418


>gi|156083174|ref|XP_001609071.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
           containing protein [Babesia bovis T2Bo]
 gi|154796321|gb|EDO05503.1| DEAD/DEAH box helicase and  helicase conserved C-terminal domain
           containing protein [Babesia bovis]
          Length = 454

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 129/350 (36%), Positives = 198/350 (56%), Gaps = 10/350 (2%)

Query: 24  PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRE 83
           PTPIQ+  IP  L   DV G+A TG+GKT +F +P+L  L +   R+     ++L P+RE
Sbjct: 55  PTPIQMAAIPHALNGRDVIGLAVTGSGKTGAFTIPVLHHLLEDVQRIY---CVVLAPSRE 111

Query: 84  LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGK-L 142
           L  Q+A+ F     +  L V ++IGG+    Q   L +   V++ +PGR+ DH    K  
Sbjct: 112 LCEQIAEQFRALSSSIALQVCVIIGGVDMVHQASALAKRPHVIVASPGRLADHVENTKGF 171

Query: 143 LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNP 202
            ++ ++ LVIDEADR+L   F   +  I   +P  RQT LFSATMT +L K+ +  L++P
Sbjct: 172 SLSTVKKLVIDEADRLLSQDFDEELDKIIHAMPTERQTFLFSATMTKKLSKLQKMALKDP 231

Query: 203 KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLC 262
             ++V+   STAE ++  F+    +Y  K   L  LL    T +  I+FC          
Sbjct: 232 ISVQVDDKYSTAENLDQRFLLVPQKY--KYTYLAALLWYYAT-RTAIVFCKTCDGAQRCA 288

Query: 263 HSLEKQGFS-VC--AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
             L+   F+ +C   +HG + Q  R + L  FK G++ ++VA+++  RGLD+P V  V N
Sbjct: 289 AYLKGLKFTTICKVCLHGKMTQADRSRALQIFKTGSVNILVATEVGGRGLDLPMVELVIN 348

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           FD+P  +++YIHR+GRT RAGR G A T+V + D++    IE  + KK++
Sbjct: 349 FDIPECSKDYIHRVGRTARAGRSGLALTVVTQYDVELFQRIELALNKKLE 398


>gi|150025027|ref|YP_001295853.1| DEAD-box ATP dependent DNA helicase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771568|emb|CAL43039.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
           [Flavobacterium psychrophilum JIP02/86]
          Length = 444

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 216/367 (58%), Gaps = 18/367 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHD-VCGIAQTGTGKTASFVLPMLT 61
           FA+LG++  ++ A+LD     PT IQ K++P++L   D   G+A+TGTGKTA+F LP+L 
Sbjct: 5   FANLGIAEPILKALLDLKITVPTEIQQKSVPVLLSSQDDFIGLAKTGTGKTAAFGLPLLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           ++    A+++    +IL PTREL  Q+  N E + K    +++A + GGIP + Q ++L+
Sbjct: 65  LINVNNAKIQ---AVILVPTRELGNQIFTNLESFAKYLPEVSIASVCGGIPIKPQIERLQ 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR++D   RG + +  I  L++DEAD M        +  I   +P  R+T
Sbjct: 122 QTTHIVVATPGRLIDLIKRGAINIKEINYLILDEADEM-ATALKEGLDEIAIDLPKNRKT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE-----TIEHCFVATYAQYSKKCALL 235
            LFSATM   ++++ +N++      +V   S++ E     +I H ++       +K  +L
Sbjct: 181 WLFSATMPGTVKQLVQNYMSK----KVTQVSASMEIVGNSSINHEYIVV--DPIEKLEVL 234

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L S++  + GIIFC  K  V  L  +L    FS  AIHG++ Q  R +I+  F+ G 
Sbjct: 235 MHFLTSKEGQR-GIIFCKTKAAVNKLAKNLAINRFSSGAIHGSLTQPIRDRIMDQFRAGH 293

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+DLAARG+D+ ++ +V N+ +P+  E Y+HR GRT RAG +G + T++ +E+I 
Sbjct: 294 INILVATDLAARGIDVKEISYVVNYHLPDVHETYVHRSGRTARAGANGFSLTILQQEEIA 353

Query: 356 HIDAIEK 362
            I   EK
Sbjct: 354 EIADFEK 360


>gi|84468270|dbj|BAE71218.1| putative DEAD-box protein abstrakt [Trifolium pratense]
          Length = 588

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 140/400 (35%), Positives = 217/400 (54%), Gaps = 28/400 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     ++  +   G V+PTPIQ++ +P++L   D+ GIA TG+GKT  FVLPM+ 
Sbjct: 144 NFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIM 203

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
           +  +    + +     P  LI+ P+RELA Q  +  E++           L   L IGGI
Sbjct: 204 MAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEQFLLPLKEAGYPELRPLLCIGGI 263

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + +++G  +++ TPGR+ D   + K+ ++N   L +DEADR++D+GF   I+ +
Sbjct: 264 DMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 323

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q  + + L  P  I VN   + A  ++      Y +   
Sbjct: 324 FDHFKAQRQTLLFSATMPTKIQNFARSALVKP--IIVNVGRAGAANLDVIQEVEYVKQEA 381

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K   L + LQ   T    +IFC  K +V ++   L  +G    AIHG  DQ  R   +S+
Sbjct: 382 KIVYLLECLQK--TPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISS 439

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 440 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 499

Query: 351 KE-------DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
           K        D+KH      L+++    +   L+ LN P+E
Sbjct: 500 KNQSETTLLDLKH------LLQEAKQRIPPVLAELNDPME 533


>gi|218201153|gb|EEC83580.1| hypothetical protein OsI_29242 [Oryza sativa Indica Group]
          Length = 883

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 125/356 (35%), Positives = 205/356 (57%), Gaps = 3/356 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +V   V   GY  PTPIQ K +PL+L  HD+  +A+TG+GKTA+F++PM+  
Sbjct: 51  FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQR 110

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +  A   + R LIL PTR+LA Q     ++ GK  +L ++L++GG   E+Q ++L   
Sbjct: 111 LRRHDAGAGI-RALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAEN 169

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR++ H    + L +  +E +V DEAD +  +G I  + +I   +  TRQTL
Sbjct: 170 PDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSLFSLGLIQQLHDILHKLSDTRQTL 229

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L   ++  L++P+ + ++     +  ++  F  T  Q  K  ALL  + + 
Sbjct: 230 LFSATLPQALADFAKAGLRDPQIVRLDLDKKISPDLKLAFF-TLRQEEKLAALLYLVRER 288

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  IIF + K +V  L     ++G      +G +DQ +R   +S F+     +++ 
Sbjct: 289 ISSEEQTIIFVSTKHHVEFLNILFREEGLEPSLSYGAMDQEARNIHISKFRARKTMILIV 348

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +D+AARGLDIP + +V N+D P + + ++HR+GR  R GR G A+T V  ED+ ++
Sbjct: 349 TDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRSGTAYTFVTSEDMAYL 404


>gi|332297229|ref|YP_004439151.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM
           12168]
 gi|332180332|gb|AEE16020.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM
           12168]
          Length = 632

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 133/370 (35%), Positives = 208/370 (56%), Gaps = 9/370 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59
           + F DLGL    + A+   G+  P+PIQ+  IP +L    +V   A+TGTGKTA+F LP+
Sbjct: 5   ISFEDLGLDEITLNAIALKGFEVPSPIQVLAIPRLLGGEANVIAKARTGTGKTAAFGLPL 64

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  + + +  VR    LIL PTRELA QV    +         +A + GG     Q + L
Sbjct: 65  VQTIREDKGHVR---ALILAPTRELALQVCKEIDSLTTGTYPRLAAVYGGQSMGEQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG ++++ TPGR+ DH  R  L ++ I+  ++DEAD MLDMGFI  I+ I +      +
Sbjct: 122 KRGVEIVVGTPGRVQDHIERKSLDLSQIDYFILDEADEMLDMGFIDDIEAIFAKANPESR 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQL 238
            LLFSATM   + K++  F+ + + +E  T P     T +  ++    +  K  AL++ +
Sbjct: 182 ILLFSATMPQPILKIASRFMGDYEIVEEETSPEEPVLTEQKYWIVR--ESDKIEALVRLI 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S D    G++F   K +   +   L+++G+   A+HG+I Q  R KIL  F+    ++
Sbjct: 240 DISPDFY--GLVFTQTKADADMITRQLDERGYEAAALHGDIPQAQREKILYRFRNKKTRI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV N+ +P     Y+HRIGRTGRAG  G AFTLV  E+ + ++
Sbjct: 298 LVATDVAARGIDIEGLTHVVNYALPFDGPTYVHRIGRTGRAGAKGLAFTLVRPEERRKLE 357

Query: 359 AIEKLIEKKV 368
            ++  + K  
Sbjct: 358 YLKAAVRKSA 367


>gi|170727393|ref|YP_001761419.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169812740|gb|ACA87324.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 447

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 128/374 (34%), Positives = 209/374 (55%), Gaps = 7/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F +  L  +++ ++   G   PT IQ   IP+ L   D+   ++TG+GKT +F+LP M
Sbjct: 1   MQFTEFSLDARLLQSLSHMGITTPTEIQEMAIPVGLSGKDLMASSKTGSGKTLAFLLPAM 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I+       R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRIISTKALSKRDPRVLILLPTRELANQVYSQLRLLVANTQYKALKILGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGR+ DH  +    +N +E+L++DEADRMLD+GF   ++ I +     R 
Sbjct: 121 ARDPHFVVATPGRLADHLAQHHFHLNGLELLILDEADRMLDLGFADQLKAINAAADHKRR 180

Query: 179 QTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+  +E+ +++   L++PK + V   +   + I +  ++  +  +  K ALLQ
Sbjct: 181 QTLMFSATLNHNEINEIASELLKDPKHVAVGASNIENQDITQKIYLCDHLDH--KEALLQ 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +L+  +  K  IIF   +++   L   L ++GF+  ++ G+++Q +R +I+  F  G  
Sbjct: 239 SILKRGE-QKQVIIFTATRQDTDRLAKKLAEEGFNTASLSGDLNQSARNQIMDQFSRGMQ 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRT RAG  G A + V  +D  +
Sbjct: 298 DILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTARAGAKGDAISFVGPKDWVN 357

Query: 357 IDAIEKLIEKKVDW 370
              +++ + K  ++
Sbjct: 358 FKQVQQFLSKTFEF 371


>gi|256088557|ref|XP_002580397.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665967|emb|CAZ36636.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 1500

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 123/355 (34%), Positives = 208/355 (58%), Gaps = 11/355 (3%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++   G+S +++  +    + KPTPIQ + +P+++   D+ GIA+TG+GKT +F++P++ 
Sbjct: 807  NWVQAGISSRLLACLKRNNFDKPTPIQCQALPVIMSGRDMIGIAKTGSGKTLAFLVPLMR 866

Query: 62   ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             LE  +A +     P  L+L PTRELA Q+    +K  +  +     + GG     Q  +
Sbjct: 867  HLEH-QAPLNPGDGPIALLLAPTRELALQIFKETKKLCQAADARAVCVYGGTGISEQIAE 925

Query: 119  LERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            L+RGA++++CTPGR++D    N G++  ++    +V+DEADRM D+GF P +  I     
Sbjct: 926  LKRGAEIIVCTPGRMIDMLAANGGRVTNLHRCSYVVLDEADRMFDLGFEPQVMRIIENCR 985

Query: 176  FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCAL 234
              RQTL+FSAT   +++ ++   L  P  I++   S     +E H F+ +  +   K   
Sbjct: 986  PDRQTLMFSATFPRQMEILARKVLTLPIEIQIGGRSVVCSDVEQHAFILSEEEKVYKVLE 1045

Query: 235  LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            L  + Q + ++   ++F  ++++   L   L K G+   ++HG IDQ  R  ++ +FK G
Sbjct: 1046 LLGIYQEEGSV---LVFVEKQESADELMRVLLKYGYPCLSLHGGIDQYDRDSVIMDFKRG 1102

Query: 295  TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
             I+L++A+ +AARGLD+ D+  V N+D PN  E+Y+HR GRTGRAGR G A+T +
Sbjct: 1103 NIRLLIATSVAARGLDVTDLLLVINYDCPNHYEDYVHRCGRTGRAGRKGFAYTFL 1157


>gi|254523078|ref|ZP_05135133.1| ATP-independent RNA helicase DbpA [Stenotrophomonas sp. SKA14]
 gi|219720669|gb|EED39194.1| ATP-independent RNA helicase DbpA [Stenotrophomonas sp. SKA14]
          Length = 458

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 145/382 (37%), Positives = 221/382 (57%), Gaps = 11/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ L LSP +   +   GY   TP+Q +++P +L   DV   A TG+GKTA+F L +L 
Sbjct: 3   DFSTLPLSPALQPGLDALGYTTLTPVQAQSLPAILDGRDVIAQAPTGSGKTAAFGLGLLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++    RV+    L+L PTRELA QV     K      NL + LL+GG+P   Q   LE
Sbjct: 63  AIDPSLIRVQ---ALVLCPTRELADQVGKQIRKLATGIPNLKLLLLVGGVPLGPQLASLE 119

Query: 121 RGAD--VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            G D  V++ TPGR+ +   +  L +  +  LV+DEADRMLDMGF   I+ I       R
Sbjct: 120 -GHDPHVVVGTPGRVQELARKRALNLGAVRTLVLDEADRMLDMGFEEPIREIAGRTHKDR 178

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+LLFSAT  D ++ ++ + L++   + V   +  A  I H F      + +K AL   L
Sbjct: 179 QSLLFSATFPDSIRAMARDLLRDAVEVTVEG-ADQAPAIRHLFCEVEPAHRQK-ALAGLL 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+   T ++ ++FCN +K+V  + +SL++ GFS  A+HG+++QR R ++L      +  +
Sbjct: 237 LKY--TPESAVVFCNTRKDVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRSCNV 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASD+AARGLD+ ++  V N+++P   E+Y HR+GRTGRAG  G A +LVA  +    +
Sbjct: 295 LVASDVAARGLDVEELAAVINYELPTDVESYQHRVGRTGRAGASGLAISLVAGREKSRAE 354

Query: 359 AIEKLIEKKVDWLNGDLSSLNP 380
           AIE  + + +DW    L++  P
Sbjct: 355 AIEAQMGQPLDWQKTPLATSRP 376


>gi|322784405|gb|EFZ11376.1| hypothetical protein SINV_10914 [Solenopsis invicta]
          Length = 626

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 204/374 (54%), Gaps = 24/374 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G VKPTPIQ++ IP VL   D+ GIA TG+GKT  FVLP++  
Sbjct: 187 FKEMKFHKGILYGLEQKGIVKPTPIQVQGIPTVLSGRDMIGIASTGSGKTLVFVLPIIEF 246

Query: 63  -----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT------VALLIGGIP 111
                ++    +   P  LI+ P+RELA Q  D    Y  +   T        L IGG+P
Sbjct: 247 CLEQEIDMPFIKKEGPYGLIICPSRELAKQTFDIIRHYTNSIRQTDCPEIRCCLAIGGVP 306

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
                  + +G  +++ TPGR++D  ++  + ++    L +DEADRM+DMGF   ++ I 
Sbjct: 307 VSESLAVINKGVHIMVATPGRLMDMLHKKMVTLSVCRYLCMDEADRMIDMGFEEDVRTIF 366

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM   +Q  + + L  P  + +N   + A ++    V    +Y K+
Sbjct: 367 SFFRGQRQTLLFSATMPKRIQNFARSALVKP--VTINVGRAGAASMN---VVQEVEYVKQ 421

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K++V  +   L  +G    AIHG IDQ  R + +  
Sbjct: 422 EAKIVYLLECLQKTAPPVLIFAEKKRDVDAIHEYLLIKGVEAVAIHGGIDQEERSRSVEA 481

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+D+A++GLD  +V HV N+D+P+  ENY+HRIGRTGR+GR G A T + 
Sbjct: 482 FRAGRKDVLVATDVASKGLDFAEVQHVINYDMPDDVENYVHRIGRTGRSGRTGIATTFIN 541

Query: 351 KE-------DIKHI 357
           K        D+KH+
Sbjct: 542 KANDESVLLDLKHL 555


>gi|321258735|ref|XP_003194088.1| ATP-dependent rRNA helicase RRP3 [Cryptococcus gattii WM276]
 gi|317460559|gb|ADV22301.1| ATP-dependent rRNA helicase RRP3 [Cryptococcus gattii WM276]
          Length = 586

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 136/355 (38%), Positives = 206/355 (58%), Gaps = 22/355 (6%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL---------EKGRARVR 71
           + KPTPIQ  + P +L++ DV GIA+TG+GKT +F +P + +L         +KGR +V 
Sbjct: 174 FEKPTPIQACSWPALLRKKDVVGIAETGSGKTLAFGVPGINLLSQLPPVTGSKKGRGQVP 233

Query: 72  -MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-ERGADVLICT 129
              + L+L PTRELA Q  ++   +G+   L    + GG+  + Q K+L +R A V++ T
Sbjct: 234 GQIQMLVLAPTRELAQQSHEHLLAFGEQVGLKSVCIFGGVGKDGQAKELSQREARVVVGT 293

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF---TRQTLLFSAT 186
           PGR LD  + G+L ++++  LV+DEADRMLD GF   I+ I +  P     RQT++FSAT
Sbjct: 294 PGRTLDLADSGELDLSSVSYLVLDEADRMLDAGFENDIRRIIAHTPGHKEGRQTVMFSAT 353

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQL---LQSQ 242
             + +++++  FL +P RI V +   +A + IE           K   L   L   L++ 
Sbjct: 354 WPESVRRLASTFLNDPLRITVGSDELSANKRIEQVVEVLDNPRDKDFRLTHHLRAHLKAH 413

Query: 243 DTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              K      ++F   KK    L +++ + G++V A+HG++ Q +R K L  FK G   +
Sbjct: 414 PNSKASPTRILVFALYKKEAQRLEYTIRRAGYAVGALHGDMTQEARFKALEAFKTGQQNV 473

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +VA+D+AARGLDIPDVG V N   P   E+++HR GRTGRAG+ GKA T    E+
Sbjct: 474 LVATDVAARGLDIPDVGLVINVTFPLTTEDFVHRCGRTGRAGKTGKAVTFFTGEN 528


>gi|307174080|gb|EFN64767.1| ATP-dependent RNA helicase abstrakt [Camponotus floridanus]
          Length = 620

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 204/374 (54%), Gaps = 24/374 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G +KPTPIQ++ IP VL   D+ GIA TG+GKT  FVLP++  
Sbjct: 181 FKEMKFHKGILYGLEQKGIIKPTPIQVQGIPTVLSGRDMIGIASTGSGKTLVFVLPIIEF 240

Query: 63  -----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY------NLTVALLIGGIP 111
                ++    +   P  LI+ P+RELA Q  D    Y  +        +   L IGG+P
Sbjct: 241 CLEQEIDMPFIKKEGPYGLIICPSRELAKQTYDIIRHYTNSLRQVDCPEIRCCLAIGGVP 300

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
                  + +G  +++ TPGR++D  ++  + ++    L +DEADRM+DMGF   ++ I 
Sbjct: 301 VSESLAIINKGVHIMVATPGRLMDMLHKKMVTLSVCRYLCMDEADRMIDMGFEEDVRTIF 360

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM   +Q  + + L  P  + +N   + A ++    V    +Y K+
Sbjct: 361 SFFRGQRQTLLFSATMPKRIQNFARSALVKP--VTINVGRAGAASMN---VIQEVEYVKQ 415

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K++V  +   L  +G    AIHG IDQ  R + +  
Sbjct: 416 EAKIVYLLECLQKTAPPVLIFAEKKRDVDAIHEYLLIKGVEAVAIHGGIDQEERSRSVEA 475

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+D+A++GLD  DV HV N+D+P+  ENY+HRIGRTGR+GR G A T + 
Sbjct: 476 FRGGRKDVLVATDVASKGLDFADVQHVINYDMPDDVENYVHRIGRTGRSGRTGIATTFIN 535

Query: 351 KE-------DIKHI 357
           K        D+KH+
Sbjct: 536 KANDESVLLDLKHL 549


>gi|218187683|gb|EEC70110.1| hypothetical protein OsI_00766 [Oryza sativa Indica Group]
          Length = 470

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 133/392 (33%), Positives = 208/392 (53%), Gaps = 46/392 (11%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+G    V+  +  AG+V+PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP + 
Sbjct: 94  EFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIV 153

Query: 62  ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                 IL  G      P  L+L PTRELA Q+     K+G                   
Sbjct: 154 HVNAQPILAPGDG----PIVLVLAPTRELAVQIQQEATKFG------------------- 190

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
                   +++I TPGR++D        +  I  LV+DEADRMLDMGF P I+ I S + 
Sbjct: 191 -------VEIVIATPGRLIDMIESHHTNLRRITYLVLDEADRMLDMGFEPQIKKIVSQIR 243

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQ-YSKKC 232
             RQTL +SAT   E+++++ NFL +P ++ + +    A     +H  + + +Q Y+K  
Sbjct: 244 PDRQTLYWSATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILSESQKYNKLV 303

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL+ ++     +    IF + KK    +   L   G+   +IHG+  Q  R  +LS FK
Sbjct: 304 NLLEDIMDGSRIL----IFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFK 359

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +M A+D+AARGLD+ DV +V N+D P   E+Y+HRIGRTGRAG  G A+T     
Sbjct: 360 SGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 419

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLN---PP 381
           + +    +  ++E+    ++ +L+++    PP
Sbjct: 420 NARFAKDLINILEEAGQKVSPELANMGRGAPP 451


>gi|167824801|ref|ZP_02456272.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 9]
          Length = 351

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 119/300 (39%), Positives = 181/300 (60%), Gaps = 11/300 (3%)

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLERGADVLIC 128
           V  P  L+L PTRELA QV      YGK+   L    ++GG+ +  Q   L +  ++L+ 
Sbjct: 16  VARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVA 75

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR+LDH  RG++ ++ +++LV+DEADRMLDMGFI  I  I +  P TRQT+LFSAT+ 
Sbjct: 76  TPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATRQTMLFSATLD 135

Query: 189 DELQKVSENFLQNPKRIEVN----TPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
            ++  ++   L++P+RIE+     + S+ A+T+ +           K  LL  LL+    
Sbjct: 136 GKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYV-----DDRDHKDRLLDHLLRDV-A 189

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
           +   IIF   K +   L   L   GF   A+HG++ Q +R + +   +E  ++++VA+D+
Sbjct: 190 LDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVLVATDV 249

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           AARG+DIP + HVFN+D+P  AE+Y+HRIGRTGRAGR G A +LV   +   +  IE+ +
Sbjct: 250 AARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTAVSLVHHAEQGALKRIERFV 309


>gi|258570243|ref|XP_002543925.1| hypothetical protein UREG_03442 [Uncinocarpus reesii 1704]
 gi|237904195|gb|EEP78596.1| hypothetical protein UREG_03442 [Uncinocarpus reesii 1704]
          Length = 1206

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 131/373 (35%), Positives = 208/373 (55%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL    +  +   GY +PT IQ + IP ++   DV G+A+TG+GKT +F+LPM   
Sbjct: 572 WSQCGLGVLTLDVIHKLGYDQPTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRH 631

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++  R    M  P  L++ PTRELA Q+    + + K  NL      GG P + Q  +L+
Sbjct: 632 IKDQRPLENMEGPVGLVMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELK 691

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   +  +
Sbjct: 692 RGAEIIVCTPGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIIGNIRPS 751

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ++LFSAT    ++ ++   L  P  I V   S  A  I    V    + +K   LL+ 
Sbjct: 752 RQSVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAPEITQ-IVEVRPENTKFVRLLEL 810

Query: 238 L--LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L  L S D  ++   +IF ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 811 LGNLYSDDANEDARALIFVDRQEAADGLLRDLMRKGYPCMSIHGGKDQVDRDSTIDDFKA 870

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + +E 
Sbjct: 871 GIFPVLIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQ 930

Query: 354 IKHIDAIEKLIEK 366
            ++   I K +++
Sbjct: 931 ERYSVDIAKALKQ 943


>gi|156100409|ref|XP_001615932.1| helicase [Plasmodium vivax SaI-1]
 gi|148804806|gb|EDL46205.1| helicase, putative [Plasmodium vivax]
          Length = 528

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 147/428 (34%), Positives = 223/428 (52%), Gaps = 25/428 (5%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILE 64
           +G    V+ ++ +   V PTPIQI+  P+ L   D+ G A+TG+GKT +F+LP    IL 
Sbjct: 118 IGFPDYVLKSLKNNNIVTPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILA 177

Query: 65  KGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
           +   +    P  L++ PTRELA Q+     K+     +      GG+P   Q   L++G 
Sbjct: 178 QPSLKYGDGPIVLVMAPTRELAEQIRQECIKFSIESKIRNTCAYGGVPKSGQIYALKQGV 237

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            +LI  PGR++D   +    +  +  LV+DEAD+MLDMGF   I+ I   +   RQTL++
Sbjct: 238 HILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFEIQIRKIVEQIRPDRQTLMW 297

Query: 184 SATMTDELQKVSENFL-QNPKRIEVNTPSSTA---ETIEHCFVATYAQYSKKCALLQQLL 239
           SAT   E+Q ++ +   Q P  + V + + TA      E   +  + + +    LLQ++ 
Sbjct: 298 SATWPKEVQSLARDLCKQQPIHVNVGSLTLTACRRIKQEIYLIEEHEKIANLKLLLQRIF 357

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D +   I+F   KKN   +  +L   G     IHG+  Q  R  +L++FK G   ++
Sbjct: 358 RDNDRI---IVFVETKKNADFITKALRLDGVPALCIHGDKKQDERRWVLNDFKTGKSPIL 414

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLDI DV +V NFD PN+ E+Y+HRIGRTGRAG HG +FT +  +       
Sbjct: 415 IATDVASRGLDIKDVKYVINFDFPNQIEDYVHRIGRTGRAGAHGASFTFLTSDKY----- 469

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
             +L    V  L      + P LEKI     N+ R+N        G+ R   N +S    
Sbjct: 470 --RLARDLVKILRESEQPVPPQLEKISYTAVNNPRRN-----PYYGYGRSSHNVNS---- 518

Query: 420 IPLKESEK 427
           IPLK S +
Sbjct: 519 IPLKGSNR 526


>gi|323453004|gb|EGB08876.1| Apo-Eif4aiii [Aureococcus anophagefferens]
          Length = 395

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 202/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+ +P+ IQ + I  ++   DV   +Q+GTGKTA F + ML +
Sbjct: 24  FEGMALREDLLRGIYAYGFERPSAIQQRAITPIVAGRDVIAQSQSGTGKTAVFCIAMLQV 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE      +M   L + PTRELA Q        G   N+     IGG       ++L+ G
Sbjct: 84  LESATNETQM---LTISPTRELAEQTQKVCLALGDYMNVQCHACIGGKSIGEDIRRLDYG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L   N+++LVIDEAD ML+ GF   I +I   +P + Q +L
Sbjct: 141 VQIVSGTPGRVFDMIKRRNLRTRNLKMLVIDEADEMLNRGFKEQIYDIYRYLPPSTQVVL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SATM  E+  ++  F+  P R+ V     T E I+  FVA   +   +   C L   L 
Sbjct: 201 ISATMPQEVLDMTRKFMNEPVRVLVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 259

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L + + +  F+V A+HG++ QR R  I++ F+ G  +++
Sbjct: 260 ----TITQAVIFCNTKRKVDWLANKMREANFTVSAMHGDMPQRERDAIMAEFRGGASRVL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+  RGLD+  V  V  +D+PN  E YIHRIGR+GR GR G A   V  +D++ +  
Sbjct: 316 IATDIWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDVRILRD 375

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 376 IEQYYSTQIDEMPMNVADL 394


>gi|296422662|ref|XP_002840878.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637104|emb|CAZ85069.1| unnamed protein product [Tuber melanosporum]
          Length = 838

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 130/367 (35%), Positives = 203/367 (55%), Gaps = 35/367 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPLVL   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 91  FQSMGLNMTLLKAITRKGFSVPTPIQRKTIPLVLDGVDVVGMARTGSGKTAAFVIPMVER 150

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    RV M R L+L P+RELA Q     +++G+  +L V LL+GG   E Q   +   
Sbjct: 151 LKTHSVRVGM-RALVLSPSRELALQTMKVVKEFGRGTDLKVVLLVGGDSLEEQFGYMAGN 209

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR +      +L + +++ +V DEADR+ +MGF   +  I   +P  RQTLL
Sbjct: 210 PDIVIATPGRFMHLKVEMELDLRSVQYVVFDEADRLFEMGFSAQLTEILHSLPSNRQTLL 269

Query: 183 FSATM-TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT+   E +    + LQ+                 H F  T + +S            
Sbjct: 270 FSATLPNSEKEGALLHLLQDRT---------------HQFHETASTHST----------- 303

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K +V  L   + + GF V  ++G +DQ +R   ++ F+ G   ++V 
Sbjct: 304 -------IVFAATKHHVEYLAQLISQAGFQVSYVYGTLDQVARRNQVARFRTGDTSILVV 356

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP + +V N+D P + + ++HR+GRT RAGR G A++ V  ED  ++  ++
Sbjct: 357 TDVAARGIDIPLLSNVINYDFPPQPKVFVHRVGRTARAGRRGWAYSFVRAEDAPYLLDLQ 416

Query: 362 KLIEKKV 368
             + KK+
Sbjct: 417 LFLGKKL 423


>gi|167911540|ref|ZP_02498631.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 112]
          Length = 337

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 119/300 (39%), Positives = 181/300 (60%), Gaps = 11/300 (3%)

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLERGADVLIC 128
           V  P  L+L PTRELA QV      YGK+   L    ++GG+ +  Q   L +  ++L+ 
Sbjct: 2   VARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVA 61

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR+LDH  RG++ ++ +++LV+DEADRMLDMGFI  I  I +  P TRQT+LFSAT+ 
Sbjct: 62  TPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATRQTMLFSATLD 121

Query: 189 DELQKVSENFLQNPKRIEVN----TPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
            ++  ++   L++P+RIE+     + S+ A+T+ +           K  LL  LL+    
Sbjct: 122 GKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYV-----DDRDHKDRLLDHLLRDV-A 175

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
           +   IIF   K +   L   L   GF   A+HG++ Q +R + +   +E  ++++VA+D+
Sbjct: 176 LDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVLVATDV 235

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           AARG+DIP + HVFN+D+P  AE+Y+HRIGRTGRAGR G A +LV   +   +  IE+ +
Sbjct: 236 AARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTAVSLVHHAEQGALKRIERFV 295


>gi|74006740|ref|XP_861512.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 10 [Canis familiaris]
          Length = 640

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 138/392 (35%), Positives = 215/392 (54%), Gaps = 47/392 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 182 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241

Query: 62  ------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 242 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 301

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 302 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 361

Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I      
Sbjct: 362 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENI------ 415

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
                ++K +L              ++F   KK   +L   L  +G++  +IHG+  QR 
Sbjct: 416 -----TQKDSLT-------------LVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 457

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 458 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 517

Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
            A +   + +I    D ++ L+E K +   WL
Sbjct: 518 LATSFFNERNINITKDLLDLLVEAKQEVPSWL 549


>gi|147898895|ref|NP_001088266.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Xenopus laevis]
 gi|83318280|gb|AAI08845.1| LOC495097 protein [Xenopus laevis]
          Length = 846

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 129/355 (36%), Positives = 200/355 (56%), Gaps = 2/355 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   V+  GY  PTPIQ K +P++L   DV  +A+TG+GKTA F++PM   
Sbjct: 77  FQSMGLSYPVYKGVMKKGYKVPTPIQRKVVPVILDGKDVVAMARTGSGKTACFLIPMFEK 136

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+  + R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 137 LKAHSAQTGV-RGLILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 195

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I S +P TRQTLL
Sbjct: 196 PDIIIATPGRLMHVAIEMNLKLRSVEYVVFDEADRLFEMGFAEQLQEIISRLPETRQTLL 255

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +  ++ ++  F     +  K   LL  L    
Sbjct: 256 FSATLPKMLLEFARAGLTEPVLIRLDVDTKLSDQLKLSFFNVRVE-DKPAVLLHLLRCVV 314

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  +IF   K +   L   L+ QG     I+ ++DQ +R   L  F  G ++ ++ +
Sbjct: 315 KPQEQTVIFVATKHHAEYLRELLDMQGIPCSHIYSSLDQTARKINLGLFLHGKVRALLVT 374

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           D+AARG+DIP + +V N++ P +A+ ++HR+GR  RAGR G A++ +A ++I ++
Sbjct: 375 DVAARGIDIPMLDNVINYNFPPKAKLFLHRVGRVARAGRSGTAYSFIAPDEIPYV 429


>gi|238836384|gb|ACR61400.1| vasa [Ctenopharyngodon idella]
          Length = 670

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 143/402 (35%), Positives = 221/402 (54%), Gaps = 20/402 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 233 MTFDEAKLCESLSKNVTKSGYVKPTPVQKYGIPIISAGRDLMACAQTGSGKTAAFLLPIL 292

Query: 61  T-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
              +  G A      V+ P  +I+ PTREL  Q+     K+     +   ++ GGI    
Sbjct: 293 QRFMTDGVAASKFSEVQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGY 352

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL- 173
             +++ +G +VL  TPGR+LD   RGK+ ++ +  L++DEADRMLDMGF P ++ +    
Sbjct: 353 TIREVLKGCNVLCGTPGRLLDIIGRGKVGLSKLRYLILDEADRMLDMGFEPDMRKLVGSP 412

Query: 174 ---VPFTRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +E+Q+++  FL+ +   + V         +E   +    QYS
Sbjct: 413 GMPAKEDRQTLMFSATFPEEIQRLAAEFLKVDYLFLAVGVVGGACSDVEQTIIQV-DQYS 471

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL+ LL++  T +  ++F   K++   +   L ++  S  +IHG+ +QR R K LS
Sbjct: 472 KREQLLE-LLKTTGTERT-MVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALS 529

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G   ++VA+ +AARGLDI  V HV NFD+PN  + Y+HRIGRTGR G  G+A +  
Sbjct: 530 DFRTGQCPVLVATSVAARGLDIEHVQHVVNFDLPNNIDEYVHRIGRTGRCGNIGRAVSFF 589

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
             E      +   L    V  L+G   ++   LE+I  + H 
Sbjct: 590 NPE------SDTPLARSLVKVLSGAQQTVPKWLEEIAFSAHG 625


>gi|156845404|ref|XP_001645593.1| hypothetical protein Kpol_1033p40 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380615|sp|A7TJ36|DBP3_VANPO RecName: Full=ATP-dependent RNA helicase DBP3
 gi|156116258|gb|EDO17735.1| hypothetical protein Kpol_1033p40 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 530

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 135/365 (36%), Positives = 209/365 (57%), Gaps = 12/365 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ + L  ++   +  + + KPTPIQ  + P +L   DV G+A+TG+GKT +F +P +
Sbjct: 117 LSFSHISLDSRIQAEI--SKFPKPTPIQAVSWPYLLAGKDVIGVAETGSGKTFAFGVPAI 174

Query: 61  T-ILEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             IL K  ++      + LI+ PTRELA+Q+ DN         L    + GG+P + Q  
Sbjct: 175 NNILTKSGSKPGKNGIQVLIISPTRELASQIYDNLVILTDKVGLECCCVYGGVPKDEQRT 234

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L+R + V++ TPGR+LD    G   ++N+  LV+DEADRML+ GF   I+NI      T
Sbjct: 235 QLKR-SQVVVATPGRLLDLIQEGAANLSNVNYLVLDEADRMLEKGFEEDIKNIIRETKST 293

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALL 235
            RQTL+F+AT   E+++++  F+ +P ++ + NT   +A       V     + K+  LL
Sbjct: 294 GRQTLMFTATWPKEVRELASTFMNSPIKVSIGNTDELSANKRITQIVEVIDPFKKERKLL 353

Query: 236 QQLLQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           + L + Q   K     +IF   KK    +  +L   G+ V AIHG++ Q+ R   L  FK
Sbjct: 354 ELLKKYQSGSKKDDKVLIFALYKKEAARVERNLNYNGYKVSAIHGDLSQQQRTNALDEFK 413

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG+ G A TL  ++
Sbjct: 414 TGRSSILLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGKTGTAHTLFTEQ 473

Query: 353 DIKHI 357
           + KH+
Sbjct: 474 E-KHL 477


>gi|109897939|ref|YP_661194.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c]
 gi|109700220|gb|ABG40140.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 447

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 133/389 (34%), Positives = 214/389 (55%), Gaps = 10/389 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DL L  ++  A+   G+ + T IQ + IP  L   D+   ++TG+GKT +F+LP +
Sbjct: 1   MQFSDLPLDHRLGKALEIKGFTEATEIQAQAIPYALMGKDLIASSKTGSGKTLAFLLPAV 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L K     + PR LIL PTRELA QV    +     + L  AL++GG  F  Q K L
Sbjct: 61  QRVLTKQPLSRKDPRVLILAPTRELAKQVFFQLKWLIAKHQLKAALILGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TR 178
                 ++ T GRI DH     L +N +E+L++DEADRMLD+GF   ++ I +      R
Sbjct: 121 RHYPQFVVGTAGRIADHLAGKSLYLNGLEMLIMDEADRMLDLGFSEQLKQINAAADHRKR 180

Query: 179 QTLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           Q+++FSAT+ +  L  ++++ L+ P RI +   S+  + I+  F       + K  LL  
Sbjct: 181 QSMMFSATLDNAALHYLTQSMLKAPHRISIGISSAEHKDIQQRFFLA-DNVTHKERLLTH 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  +D  +  I+F   + +   L + L++QG    A+ G++ Q  R  I+S F  G   
Sbjct: 240 MINEKD-HRQVIVFTATRADTERLSNLLKEQGLYSIALSGDLSQGQRNNIMSEFGRGQQH 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLD+ +V  V NFD+P  A+ Y+HR+GRTGRAG  G+A + V  +D    
Sbjct: 299 ILVTTDIASRGLDLLNVSLVVNFDLPKLADEYVHRVGRTGRAGNKGEAVSFVGPKDWASY 358

Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNPP 381
            +I+  ++++V +     L      L PP
Sbjct: 359 LSIKSFLQQEVSFSEIEGLEAKFKGLRPP 387


>gi|320162646|gb|EFW39545.1| ATP-dependent RNA helicase DRS1 [Capsaspora owczarzaki ATCC 30864]
          Length = 924

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 131/362 (36%), Positives = 196/362 (54%), Gaps = 8/362 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ LS  ++ A+    +   T IQ  TIP  L   D+   A+TG+GKTA+F+LP+L  
Sbjct: 344 FTEMNLSRPLLRAISSLNFANATDIQAATIPPALMGRDLVACAKTGSGKTAAFLLPVLER 403

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +      R L+L PTRELA Q     EK  K  ++ ++L+ GG   + Q  +L   
Sbjct: 404 LLYRQKTNPASRVLVLSPTRELAVQCHAMGEKLAKFTDIRMSLICGGFSTKRQQAELRAH 463

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV++ TPGR++DH  N     +  IE+L++DEADR+L+MGF   +  I      +RQT+
Sbjct: 464 PDVIVATPGRLIDHLQNSPGFDLEGIEVLIMDEADRLLEMGFKEEVDEIIRQCSVSRQTM 523

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMTDE++ +    +  P R+ +N  + TA  +   FV    Q  K+   +   +  
Sbjct: 524 LFSATMTDEVENLIALSMNKPLRVFINKNTDTATNLTQEFVRVRPQREKEKEAIVLAVCK 583

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      I+F   K+            G     +HG+++Q  R++ L  FKEG +  ++A
Sbjct: 584 RSFHTKTIVFFRSKQGAHRAKVIFGLFGLKAAELHGDLNQLQRLESLEAFKEGRVDFLLA 643

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-------KEDI 354
           +DLA+RGLDI  V  V N D+PN    YIHR+GRT RAGR G++ +LV        KE +
Sbjct: 644 TDLASRGLDIVGVETVVNADMPNTLTQYIHRVGRTARAGRAGRSLSLVCEGERKLLKEIV 703

Query: 355 KH 356
           KH
Sbjct: 704 KH 705


>gi|121586999|ref|ZP_01676777.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           2740-80]
 gi|121548734|gb|EAX58781.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           2740-80]
          Length = 428

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 202/366 (55%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A L     +P+ IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 23  MSFSSLALSADLIQA-LPKAITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++     G    L    L GG+    Q   L 
Sbjct: 82  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALA 137

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 138 ENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 197 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N  +L   L+K G    A+HG+  Q  R   L+ FK GT Q+++
Sbjct: 256 HQ--WPQVLVFIGAKENADSLTKKLKKAGVVATALHGDKSQAQREAALAEFKNGTTQVLI 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+HG A +LV   ++  ++AI
Sbjct: 314 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNAI 373

Query: 361 EKLIEK 366
             L ++
Sbjct: 374 RTLTQR 379


>gi|37573051|dbj|BAC98579.1| putative ATP-dependent RNA-helicase [Oryza sativa Japonica Group]
          Length = 828

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 125/356 (35%), Positives = 205/356 (57%), Gaps = 3/356 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +V   V   GY  PTPIQ K +PL+L  HD+  +A+TG+GKTA+F++PM+  
Sbjct: 28  FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQR 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +  A   + R LIL PTR+LA Q     ++ GK  +L ++L++GG   E+Q ++L   
Sbjct: 88  LRRHDAGAGI-RALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAEN 146

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR++ H    + L +  +E +V DEAD +  +G I  + +I   +  TRQTL
Sbjct: 147 PDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSLFSLGLIQQLHDILHKLSDTRQTL 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L   ++  L++P+ + ++     +  ++  F  T  Q  K  ALL  + + 
Sbjct: 207 LFSATLPQALADFAKAGLRDPQIVRLDLDKKISPDLKLAFF-TLRQEEKLAALLYLVRER 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  IIF + K +V  L     ++G      +G +DQ +R   +S F+     +++ 
Sbjct: 266 ISSEEQTIIFVSTKHHVEFLNILFREEGLEPSLSYGAMDQEARNIHISKFRARKTMILIV 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +D+AARGLDIP + +V N+D P + + ++HR+GR  R GR G A+T V  ED+ ++
Sbjct: 326 TDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRSGTAYTFVTSEDMAYL 381


>gi|227432082|ref|ZP_03914095.1| ATP-dependent RNA helicase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352164|gb|EEJ42377.1| ATP-dependent RNA helicase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 454

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/367 (35%), Positives = 210/367 (57%), Gaps = 15/367 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L  +V+ A+   G+ +PT +Q K IP VLQ  DV G +QTG+GKT +F++P+L  
Sbjct: 8   FGQFNLKKEVIDALSAIGFYEPTAVQAKLIPDVLQGRDVVGQSQTGSGKTHTFLIPILNQ 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
           LE+ +  V+    +I  P+RELAAQ+    +++    N +++++  +GG   + Q K+LE
Sbjct: 68  LEQDKKYVQ---AVITTPSRELAAQITKAMKEFSNQLNTDISISEFVGGTDKQRQIKQLE 124

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   ++I TPGRI D    G L ++ +  LV+DEAD  LDMGF+  +  I   +P   Q
Sbjct: 125 NQQPQIVIGTPGRIKDLVESGSLKLHAVHTLVVDEADMTLDMGFLNEVDYIAGAMPEGLQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSATM ++L+   + +L NP    +   +  A+TI++  +AT ++   K  ++ Q+L
Sbjct: 185 TLVFSATMPEKLKPFLKKYLDNPHFEAIPVSTVIADTIDNWLLATKSK--DKNDIIYQVL 242

Query: 240 QSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               T+ N    ++F N K+    +   L   G  V  IHG+I+ R R +++   +    
Sbjct: 243 ----TIGNPYLALVFANTKERAKEISSFLRGHGLKVTEIHGDIEPRERRRVMKAIQNLEY 298

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VA+DLAARG+DI  V HV N D+P   E ++HR+GRTGR G  G A TL   ++   
Sbjct: 299 QYVVATDLAARGIDIEGVSHVINDDIPAELEFFVHRVGRTGRNGLPGLAITLYGPDEENE 358

Query: 357 IDAIEKL 363
           +  +E L
Sbjct: 359 VAELEAL 365


>gi|119946657|ref|YP_944337.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119865261|gb|ABM04738.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 453

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 206/371 (55%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L   ++ A+   G+ +PT IQ   IPL +   D+   A TGTGKT +F+LP +
Sbjct: 1   MSFEALELDQHLLNAIAKMGHTRPTSIQTLAIPLAMDERDIMASAPTGTGKTLAFLLPAV 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +++  R +    R LIL PTRELA Q++       +   L V  +IGG+ ++ Q + +
Sbjct: 61  QRLIDFPRRKGGSARILILTPTRELAVQISGVASALVEGTQLVVGNIIGGVSYQEQEEVI 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D++I TPGR++++ +        +E L++DEADRMLDMGFI  +  I     + + 
Sbjct: 121 TDSVDIVIATPGRLMEYIDSEAFDCREVETLILDEADRMLDMGFIKAMDRIVGETRWRKH 180

Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVN-TPSSTAETIEHCFVATYAQYSKK--CALL 235
           T LFSAT+    L++   + L+NP ++    +   + + ++   +A   ++  +   A+L
Sbjct: 181 TALFSATLEGRGLREFCRDVLRNPAQLTAEVSRRESGKILQWVHLADSPEHKLQLLAAIL 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q ++ ++  +  I+F   +  +  L   L +       + G +DQ  R   L+ F+ G 
Sbjct: 241 EQPVKEEEQQQKVIVFVKTRDRLTELVAQLAELQIPCTYLRGEMDQEKRNLALNQFRAGN 300

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I +++A+D+AARG+D+PD+ HV N+D+P  A+ Y+HRIGRT R G+ G A +L+   D+ 
Sbjct: 301 INILIATDVAARGIDVPDITHVINYDMPRSADIYVHRIGRTARGGKKGIAISLIEAHDVD 360

Query: 356 HIDAIEKLIEK 366
            +  +E+  ++
Sbjct: 361 MLAKVERYTDQ 371


>gi|294667681|ref|ZP_06732893.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292602521|gb|EFF45960.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 430

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 200/371 (53%), Gaps = 14/371 (3%)

Query: 1   MDFADLGLSPKVV----CAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFV 56
           M F+DL LSP++      A+  AG   PTPIQ + IP +L   D+  +AQTG+GKT ++ 
Sbjct: 1   MSFSDLSLSPQLQPFFDTALARAGLRTPTPIQQQAIPPMLDGRDLIAMAQTGSGKTLAYA 60

Query: 57  LPMLTILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIP 111
           LP+L   ++  A    PR    L+L PTRELAAQV D   +   +    L   +  GG  
Sbjct: 61  LPLLQ--QRCLAPDTAPRVLGALVLVPTRELAAQVEDTLRQLAAHLPRRLKSVVATGGSS 118

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q   L  GAD+++ TPGR+LD      L ++    LV+DEADR+L++GF   +  I 
Sbjct: 119 INPQLLALRGGADIVVATPGRLLDLVEHNALRLSEAATLVLDEADRLLELGFGAELDRIL 178

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +L+P  RQT+LFSAT    +  +++  L++P RI ++     A  I    +A  A   ++
Sbjct: 179 ALLPAQRQTVLFSATFPPAIASLAKRRLRDPLRITIDATPEQAPAIAQRAIAVDA--GQR 236

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL+ LL  +      ++F   + +   +   L K G +   +HG + Q  R + L  F
Sbjct: 237 TQLLRHLLL-EHAWPQLLVFVASRHSAEKVAEKLSKTGIAALPLHGELSQGRRERTLRAF 295

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K+  +Q++VA+DLA RG+DI  +  V N+D+P    +Y HRIGRT RAG  G A + V  
Sbjct: 296 KQADVQVLVATDLAGRGIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGVAISFVTA 355

Query: 352 EDIKHIDAIEK 362
           +  +    IEK
Sbjct: 356 DSAQQWRLIEK 366


>gi|260945072|ref|XP_002616834.1| hypothetical protein CLUG_04075 [Clavispora lusitaniae ATCC 42720]
 gi|238850483|gb|EEQ39947.1| hypothetical protein CLUG_04075 [Clavispora lusitaniae ATCC 42720]
          Length = 559

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 131/392 (33%), Positives = 206/392 (52%), Gaps = 37/392 (9%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK-----------GRAR 69
           Y +PTP+Q   IP+ L+  DV GIA+TG+GKT +F+LP++T ++                
Sbjct: 166 YTEPTPVQRAAIPVALRHRDVVGIAETGSGKTLAFLLPLITYIQSIEPEYMKYEHSKEDN 225

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
                 L+L PTRELA Q+    EK      L+V  +IGG  +E     L  G  +++ T
Sbjct: 226 ANRALGLVLAPTRELALQITKEAEKVAGPLGLSVVTIIGGHQYEETVHSLRNGVHIVVAT 285

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT------------ 177
           PGR++D   RG + +     L +DEAD+M+DMGF   +Q I   +P +            
Sbjct: 286 PGRLVDSLERGIVSLEKCYHLTMDEADKMIDMGFEKSLQAILDYLPSSESLQKSIDSRIF 345

Query: 178 ----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY----- 228
               R TL+F+AT+T  ++K+++ +L +P  + V   +   E I   F     +      
Sbjct: 346 RVSKRTTLMFTATITPAIEKITKQYLIDPAFLYVGGANEVVENISQQFEYMGEETVQDFD 405

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF-SVCAIHGNIDQRSRMKI 287
            K+ A L ++L++Q    + IIF N K+ V  L   LE +GF  V  +HG+  Q +R K 
Sbjct: 406 EKRFASLVRILKAQGHDMSVIIFANFKRTVEQLAEELEGKGFPKVAVVHGSKTQEAREKA 465

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           + +F+     +++A+D+AARGLD+P V  V N+ +  + E YIHRIGRTGRAG+ G ++T
Sbjct: 466 IESFRAKRANILIATDVAARGLDVPHVSLVVNYHMSKKFEEYIHRIGRTGRAGQKGASYT 525

Query: 348 LVAKEDIKHIDAIEKLIEKK----VDWLNGDL 375
            V   D      ++K + +      +WL  +L
Sbjct: 526 FVDGGDKDTFPELKKFLSRGGYRIPEWLKRNL 557


>gi|51449873|gb|AAU01909.1| putative ATP-dependent RNA helicase [Oryza sativa Indica Group]
          Length = 828

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 125/356 (35%), Positives = 205/356 (57%), Gaps = 3/356 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +V   V   GY  PTPIQ K +PL+L  HD+  +A+TG+GKTA+F++PM+  
Sbjct: 28  FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQR 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +  A   + R LIL PTR+LA Q     ++ GK  +L ++L++GG   E+Q ++L   
Sbjct: 88  LRRHDAGAGI-RALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAEN 146

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR++ H    + L +  +E +V DEAD +  +G I  + +I   +  TRQTL
Sbjct: 147 PDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSLFSLGLIQQLHDILHKLSDTRQTL 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L   ++  L++P+ + ++     +  ++  F  T  Q  K  ALL  + + 
Sbjct: 207 LFSATLPQALADFAKAGLRDPQIVRLDLDKKISPDLKLAFF-TLRQEEKLAALLYLVRER 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  IIF + K +V  L     ++G      +G +DQ +R   +S F+     +++ 
Sbjct: 266 ISSEEQTIIFVSTKHHVEFLNILFREEGLEPSLSYGAMDQEARNIHISKFRARETMILIV 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +D+AARGLDIP + +V N+D P + + ++HR+GR  R GR G A+T V  ED+ ++
Sbjct: 326 TDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRSGTAYTFVTSEDMAYL 381


>gi|316978431|gb|EFV61418.1| putative ATP-dependent RNA helicase Pl10 [Trichinella spiralis]
          Length = 552

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 142/383 (37%), Positives = 209/383 (54%), Gaps = 22/383 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L L P ++  +    Y KPTP+Q   IP  L+  D+   AQTG+GKTA+F+LP+L  
Sbjct: 86  FSELNLHPWIMDNIRLCHYDKPTPVQKFAIPTALENRDLMACAQTGSGKTAAFLLPILHH 145

Query: 62  ILEKGRARVR------------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
           IL  G   +R             P  L+L PTREL  Q+ +   K+     +   +L GG
Sbjct: 146 ILSGGPEMLRKSDTAPNGRRRLYPAALVLAPTRELTLQIFNEACKFSYRTPIMSTILYGG 205

Query: 110 IP-FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
              +  Q  KL  G  +L+ TPGR+ D  N+G + ++    LV+DEADRMLDMGF P I+
Sbjct: 206 RENYRDQINKLRIGCHLLVATPGRLNDVMNQGYIGLDACRFLVLDEADRMLDMGFEPQIR 265

Query: 169 NITSLVPFTR----QTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVA 223
            I  +    R    QT++FSAT   E+Q ++++FL  +   + V    ST+E I    V 
Sbjct: 266 QIVEMSGMPRRSHRQTMMFSATFPHEIQMLAQDFLVPDYVFLAVGRVGSTSENITQKLV- 324

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + +   K A L  LL +       +IF   K+   +L + L  + +SV AIHG++ Q  
Sbjct: 325 -WVEDYDKRAFLLDLLNASSPETLTLIFVETKRGAADLAYFLSGERYSVVAIHGDLKQFE 383

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L +F+ G   ++VA+ +AARGLDIP+V HV N+D+P+  + Y+HRIGRTGR G  G
Sbjct: 384 REQHLESFRSGNTPILVATAVAARGLDIPNVKHVINYDLPSEIDEYVHRIGRTGRVGNIG 443

Query: 344 KAFTLVAKEDIKHI-DAIEKLIE 365
            A T    ++     D  E L+E
Sbjct: 444 LATTFFNNKNKNMARDLAELLVE 466


>gi|242067108|ref|XP_002454843.1| hypothetical protein SORBIDRAFT_04g038330 [Sorghum bicolor]
 gi|241934674|gb|EES07819.1| hypothetical protein SORBIDRAFT_04g038330 [Sorghum bicolor]
          Length = 407

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 202/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G+   ++  +   G+ KP+ IQ + +  ++   DV   AQ+GTGKT+   L +  I
Sbjct: 36  FDQMGIKDDLLRGIYGYGFEKPSAIQQRAVLPIINGRDVIAQAQSGTGKTSMISLTVCQI 95

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + LIL PTRELA+Q        G + N+ V   IGG       ++LE G
Sbjct: 96  VDTA---VREVQALILSPTRELASQTERVMLAIGDHLNVQVHACIGGKSIGEDIRRLENG 152

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML  GF   I ++   +P   Q  L
Sbjct: 153 VHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDEADEMLSRGFKDQIYDVYRYLPPELQVCL 212

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+  P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 213 ISATLPHEILEMTSKFMTEPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL- 271

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   +    F+V A+HG++ Q+ R  I+  F+ G  +++
Sbjct: 272 ----TITQAVIFCNTKRKVDWLTEKMRSNNFTVSAMHGDMPQQERDAIMGEFRSGDTRVL 327

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V K+DI+ +  
Sbjct: 328 ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRKDDIRILRD 387

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 388 IEQYYSTQIDEMPMNVADL 406


>gi|255575815|ref|XP_002528806.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223531759|gb|EEF33579.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 500

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 140/388 (36%), Positives = 216/388 (55%), Gaps = 30/388 (7%)

Query: 18  DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM----- 72
           D G V+PTPIQ++ +P++L   D+ GIA TG+GKT  FVLPM+ +  +    + +     
Sbjct: 72  DKGIVQPTPIQVQGLPVILTGRDMIGIAFTGSGKTLVFVLPMIMVALQEEIMMPIAPGEG 131

Query: 73  PRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           P  LI+ P+RELA Q  +  E++           L   L IGG+   +Q + +++G  ++
Sbjct: 132 PFGLIICPSRELARQTYEVVEQFLIPMKEAGYPELRPLLCIGGVDMRSQLEVVKKGVHIV 191

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+ D   + K+ ++N   L +DEADR++D+GF   I+ +       RQTLLFSAT
Sbjct: 192 VATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSAT 251

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS-QDTM 245
           M  ++Q  + + L  P  + VN   + A  ++   V    +Y K+ A +  LL+  Q T 
Sbjct: 252 MPTKIQNFARSALVKP--VTVNVGRAGAANLD---VIQEVEYVKQEAKIVYLLECLQKTP 306

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              +IFC  K +V ++   L  +G    AIHG  DQ  R   +S+FK G   ++VA+D+A
Sbjct: 307 PPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVA 366

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-------DIKHID 358
           ++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + K        D+KH  
Sbjct: 367 SKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKH-- 424

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKID 386
               L+++    +   L+ LN P+E  D
Sbjct: 425 ----LLQEAKQRIPPVLAELNDPMEDGD 448


>gi|167846330|ref|ZP_02471838.1| ATP-dependent RNA helicase [Burkholderia pseudomallei B7210]
          Length = 347

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 119/300 (39%), Positives = 181/300 (60%), Gaps = 11/300 (3%)

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLERGADVLIC 128
           V  P  L+L PTRELA QV      YGK+   L    ++GG+ +  Q   L +  ++L+ 
Sbjct: 1   VARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVA 60

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR+LDH  RG++ ++ +++LV+DEADRMLDMGFI  I  I +  P TRQT+LFSAT+ 
Sbjct: 61  TPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATRQTMLFSATLD 120

Query: 189 DELQKVSENFLQNPKRIEVN----TPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
            ++  ++   L++P+RIE+     + S+ A+T+ +           K  LL  LL+    
Sbjct: 121 GKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYV-----DDRDHKDRLLDHLLRDV-A 174

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
           +   IIF   K +   L   L   GF   A+HG++ Q +R + +   +E  ++++VA+D+
Sbjct: 175 LDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVLVATDV 234

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           AARG+DIP + HVFN+D+P  AE+Y+HRIGRTGRAGR G A +LV   +   +  IE+ +
Sbjct: 235 AARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTAVSLVHHAEQGALKRIERFV 294


>gi|149198198|ref|ZP_01875245.1| ATP-dependent RNA helicase [Lentisphaera araneosa HTCC2155]
 gi|149138800|gb|EDM27206.1| ATP-dependent RNA helicase [Lentisphaera araneosa HTCC2155]
          Length = 542

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 130/370 (35%), Positives = 207/370 (55%), Gaps = 10/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P V  A+ +  +   TP+Q   +P+ L+  DV   AQTGTGKTA+F++ M   
Sbjct: 117 FLSMDLCPAVQRAIHEMDFKFCTPVQEGVLPISLKGQDVAAKAQTGTGKTAAFLISMYNH 176

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                +   +   PR LIL PTRELA Q+  + E  GK  ++ V    GG+ F+ Q + L
Sbjct: 177 FVNNPQTEVKAGTPRALILAPTRELALQIGADAEGLGKYCDIRVETFFGGMDFDKQAQIL 236

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177
               D+ + TPGR++D+  R  + +  +E L IDEADRMLDMGFIP ++ I   +P    
Sbjct: 237 RGRVDIAVATPGRLMDYHRRKMINLREVEFLCIDEADRMLDMGFIPDVRKIVGYLPGRDK 296

Query: 178 RQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           R T L+SAT+   +  ++ ++L +  +++E+N  +  ++ ++   V T     K+  +L 
Sbjct: 297 RITQLYSATLNQSVLNLAASWLNEKYEKVEINPETIVSKNVDQK-VYTVTANQKENVILW 355

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA-IHGNIDQRSRMKILSNFKEGT 295
            L    + +K  IIF N+K +   L   L + G      + G++ Q+ RM+IL  F+ G 
Sbjct: 356 HL--KNEEVKRMIIFANRKFDCERLADKLYQYGVDKLELLTGDVPQKKRMRILEEFRSGK 413

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+A RG+ + DV HV N+++P   E+Y+HR+GRTGRA   GKA +   +    
Sbjct: 414 VQVLVATDVAGRGIHVDDVSHVVNYELPYEPEDYVHRVGRTGRASALGKAISFADENSGF 473

Query: 356 HIDAIEKLIE 365
            +  IE  IE
Sbjct: 474 ELPEIECYIE 483


>gi|14325565|dbj|BAB60468.1| ATP-dependent RNA helicase [Thermoplasma volcanium GSS1]
          Length = 373

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 130/362 (35%), Positives = 203/362 (56%), Gaps = 16/362 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F +  L  +++ ++   GY +PT +Q   IP+ L   D+   ++TG+GKTA++++P++  
Sbjct: 4   FEEFNLRNELIESIRGTGYSEPTEVQSMAIPIALAGSDLVVRSKTGSGKTAAYLIPIINN 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T  EKG       R LIL PTRELA QVA   E  GK   +   ++ GG+    Q + + 
Sbjct: 64  TAKEKG------IRALILLPTRELAVQVAKVSEALGKRSGIRTVVVYGGVSINKQIELIL 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA++++ TPGR LD  +RG L  + +   V+DEAD MLDMGFI  I+ I +++P  RQ+
Sbjct: 118 RGANIIVGTPGRTLDLIDRGILNFDKVSYFVLDEADEMLDMGFIEDIKKIINVLPVERQS 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT+  E+ ++++ F+ N + + ++    T   I+H +       S++   L+ L  
Sbjct: 178 FLFSATIPSEIIELAKGFMHNEEILFLSKDEVTVNGIDHNYAV-----SRRERKLRTLFS 232

Query: 241 SQDTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             D  K    IIF   K     +  +L   G     +HG++ Q  R K L  FK    + 
Sbjct: 233 YIDKYKPEKSIIFSRTKAGANMIYEALINHGQDAVIMHGDLTQAQREKALYRFKNFG-RF 291

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDI  +  + N+DVP+    Y+HR+GRT R G  G+AFT+V   +I  ID
Sbjct: 292 LVATNVAARGLDIGGISDIINYDVPDDPRVYVHRVGRTARMGAAGRAFTIVEDREIGSID 351

Query: 359 AI 360
            I
Sbjct: 352 MI 353


>gi|18859541|ref|NP_571132.1| probable ATP-dependent RNA helicase DDX4 [Danio rerio]
 gi|2463519|dbj|BAA22535.1| vas [Danio rerio]
          Length = 716

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 147/430 (34%), Positives = 232/430 (53%), Gaps = 31/430 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 277 MTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 336

Query: 61  T-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
              +  G A      ++ P  +I+ PTREL  Q+     K+     +   ++ GGI    
Sbjct: 337 QRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGY 396

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +++ +G +VL  TPGR+ D   RGK+ ++ +  LV+DEADRMLDMGF P ++ + +  
Sbjct: 397 TIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEPEMRKLVASP 456

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +++Q+++ +FL+ +   + V         +E   V    QYS
Sbjct: 457 GMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTVVQV-DQYS 515

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL+ LL++    +  ++F   K++   +   L ++  S  +IHG+ +QR R K LS
Sbjct: 516 KRDQLLE-LLRATGNERT-MVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALS 573

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G   ++VA+ +AARGLDI  V HV NFD+P+  + Y+HRIGRTGR G  G+A +  
Sbjct: 574 DFRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFF 633

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             E      +   L    V  L+G    +   LE++  + H            +TGF+ R
Sbjct: 634 NPE------SDTPLARSLVKVLSGAQQVVPKWLEEVAFSAHG-----------TTGFNPR 676

Query: 410 KKNYSSQKSH 419
            K ++S  S 
Sbjct: 677 GKVFASTDSR 686


>gi|320531823|ref|ZP_08032743.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135962|gb|EFW27990.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 449

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 129/352 (36%), Positives = 197/352 (55%), Gaps = 7/352 (1%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FADLG+   +  A LDA G+  P PIQ  T+P  L   DV G  +TG+GKT +F LP++ 
Sbjct: 12  FADLGVDSDL-AADLDARGFTAPFPIQAATLPDTLAGRDVLGRGRTGSGKTLAFSLPLVQ 70

Query: 62  IL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L ++ +AR   P  L+L PTRELA Q+A+  E   +  ++ V  + GG+  + Q K L+
Sbjct: 71  RLAQQDKARPGHPIGLVLAPTRELALQIAEVIEPLARVVDMDVTTIFGGVSAKPQEKALK 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++  PGR+LD   +G + ++ +EI V+DEAD M D+GF+P ++ I    P   Q 
Sbjct: 131 AGVDVVVACPGRLLDLMGQGLVSLDEVEITVLDEADHMADLGFLPGVRRILRATPQRGQR 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ + +  + + FL NP +  V+  +S  + + H  V   A  + K  ++++L  
Sbjct: 191 LLFSATLDNGVDTLVKEFLHNPLQHSVDPSTSPVDAMTH-RVWMVADKTAKDGIVRRLAS 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      I+F   K     L   L + G     + GN+ Q++R + +  F  G + +MV
Sbjct: 250 GEGQR---ILFTRTKHLARRLARKLVQAGIPAVELQGNMSQKARERAMRAFSTGQVHVMV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           A+D+AARG+D+  V  V + D P   + Y+HR GRT RAG  G   TLV  E
Sbjct: 307 ATDIAARGIDVSGVELVVHVDPPAEHKAYLHRSGRTARAGAAGSVITLVLPE 358


>gi|304367670|gb|ADM26640.1| vasa-like protein [Branchiostoma floridae]
          Length = 785

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 126/346 (36%), Positives = 203/346 (58%), Gaps = 17/346 (4%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRA-----R 69
           V  A Y +PTP+Q  +IP+VL   D+   AQTG+GKTA+F+LP+LT ++++G A      
Sbjct: 350 VAKAKYDRPTPVQKYSIPIVLGGRDLMACAQTGSGKTAAFLLPVLTGMMKEGLAGSSFSN 409

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           ++ P+ + + PTRELA Q+     K+     L   +  GG+       +++RG  +L+ T
Sbjct: 410 IQEPQAICVAPTRELAIQIFSEARKFSYGTMLRPCIAYGGVSVMHHKSQIQRGCHLLVAT 469

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF------TRQTLLF 183
           PGR+LD  ++G + +  ++ L++DEADRMLDMGF P I+ +     +       RQTL+F
Sbjct: 470 PGRLLDFIDKGVISIKKLKYLILDEADRMLDMGFEPEIRRLVETASWGMPAKGERQTLMF 529

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ-SQ 242
           SAT  +E+QK++++FL++   + +         +E   + + +QY K+  L   L    Q
Sbjct: 530 SATFPEEIQKLAQDFLEDYIFLTIGRVGGANTDVEQTVMES-SQYDKREKLTDILGNLGQ 588

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           + +   ++F   K+N   L   L + GF   +IHG+  Q+ R + L +F+ G   ++VA+
Sbjct: 589 ERV---LVFVETKRNADFLASYLSQSGFPTTSIHGDRLQKEREEALMDFRTGRAPVLVAT 645

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +AARGLDIP V  V N+D+P+  + Y+HRIGRTGR G  GKA + 
Sbjct: 646 SVAARGLDIPKVMVVVNYDLPSSIDEYVHRIGRTGRVGNTGKAISF 691


>gi|300783470|ref|YP_003763761.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
 gi|299792984|gb|ADJ43359.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
          Length = 500

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 125/357 (35%), Positives = 188/357 (52%), Gaps = 7/357 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL   +V A+   G  +P PIQ  T+P  L   DV G  +TG+GKT  FVLP+L  
Sbjct: 4   FAELGLPTPLVAALATQGVTEPFPIQAATLPHTLAGRDVLGRGRTGSGKTYGFVLPLLAR 63

Query: 63  LEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L  G  R +   PR LIL PTRELA Q+  +     K   L    + GG+    Q  +L 
Sbjct: 64  LAAGPTRRKPGRPRALILAPTRELATQIEASILPLAKPLGLKTTTIFGGVSANPQITRLR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+++  PGR+ DH   G + ++ IEI V+DEAD M D+GF+P ++ I    P   Q 
Sbjct: 124 DGVDIVVACPGRLADHMRSGHVKLDAIEITVLDEADHMADLGFLPEVRRIMDQTPSRGQR 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ + +  + + F+ +P    V++  S   T+EH  +  + + + +  +L  L  
Sbjct: 184 MLFSATLDNGVDVLVKRFMNDPITHSVDSAQSPVSTMEHHVL--HLEETHRLPVLVDLTA 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       ++F   K     L   L   G     +HGN+ Q +R + L  F  GT + +V
Sbjct: 242 APGRT---LVFTRTKSRAKALTRKLVASGVPAVELHGNLGQNARTRNLEAFSSGTAKTLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           A+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   TL+    ++ +
Sbjct: 299 ATDIAARGIHVDDVRLVIHADPPVEHKAYLHRSGRTARAGASGTVVTLMTDAQVRDV 355


>gi|198462622|ref|XP_002135340.1| GA28491 [Drosophila pseudoobscura pseudoobscura]
 gi|198150906|gb|EDY73967.1| GA28491 [Drosophila pseudoobscura pseudoobscura]
          Length = 537

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 201/370 (54%), Gaps = 12/370 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--EKGRARVRMPRTLIL 78
           Y +PTPIQ +  P+ L  H++ GIA+TG+GKT +F+LP +  +  ++   R   P  L+L
Sbjct: 123 YSEPTPIQAQAWPIALSGHNLVGIAKTGSGKTLAFILPAILHINGQQPLQRGEGPIALVL 182

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA Q+      +G +  +    + GG P   Q   L+RG +++I TPGR+LD   
Sbjct: 183 APTRELAQQIQSVANDFGSSAFVRNTCVFGGAPRSKQASDLKRGVEIIIATPGRLLDFLQ 242

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
            G   +     LV+DEADRMLDMGF P I+ +   +   RQ L++SAT   E+++++E+F
Sbjct: 243 SGATNLRRCTYLVLDEADRMLDMGFEPQIRKVLGQIRPDRQILMWSATWPKEVRQLAEDF 302

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA---LLQQLLQSQDTMKNGIIFCNQK 255
           L +  +I + +   +A      +V    ++ K      LL  +          IIF   K
Sbjct: 303 LGSYIQINIGSLELSANHNIRQYVEVCGEHEKSAKLKDLLSHIYDQAHAPGKIIIFVATK 362

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           K    L   +   G SV +IHG+  Q  R  +L++F+ G   ++VA+D+AARGLD+  + 
Sbjct: 363 KKTDELARFINAFGVSVGSIHGDKSQMDRDSVLNDFRSGRANILVATDVAARGLDVDGIK 422

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDL 375
           +V NFD P  +E+YIHRIGRTGR    G ++    +++ +   A+       +D L    
Sbjct: 423 YVINFDYPQSSEDYIHRIGRTGRKLSKGTSYAFFTRKNARCARAL-------IDILREAN 475

Query: 376 SSLNPPLEKI 385
            ++NP LE +
Sbjct: 476 QNVNPELENL 485


>gi|167720206|ref|ZP_02403442.1| ATP-dependent RNA helicase [Burkholderia pseudomallei DM98]
          Length = 347

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 119/300 (39%), Positives = 181/300 (60%), Gaps = 11/300 (3%)

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLERGADVLIC 128
           V  P  L+L PTRELA QV      YGK+   L    ++GG+ +  Q   L +  ++L+ 
Sbjct: 9   VARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVA 68

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR+LDH  RG++ ++ +++LV+DEADRMLDMGFI  I  I +  P TRQT+LFSAT+ 
Sbjct: 69  TPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATRQTMLFSATLD 128

Query: 189 DELQKVSENFLQNPKRIEVN----TPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
            ++  ++   L++P+RIE+     + S+ A+T+ +           K  LL  LL+    
Sbjct: 129 GKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYV-----DDRDHKDRLLDHLLRDV-A 182

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
           +   IIF   K +   L   L   GF   A+HG++ Q +R + +   +E  ++++VA+D+
Sbjct: 183 LDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVLVATDV 242

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           AARG+DIP + HVFN+D+P  AE+Y+HRIGRTGRAGR G A +LV   +   +  IE+ +
Sbjct: 243 AARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTAVSLVHHAEQGALKRIERFV 302


>gi|146092052|ref|XP_001470194.1| DEAD box RNA helicase [Leishmania infantum]
 gi|134084988|emb|CAM69387.1| putative DEAD box RNA helicase [Leishmania infantum JPCM5]
 gi|322500494|emb|CBZ35571.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 389

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 129/373 (34%), Positives = 207/373 (55%), Gaps = 6/373 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   GY KPT IQ + I   L+  DV   A +GTGKT++F +    +
Sbjct: 19  FEAMGLKEDLLKGMYSFGYKKPTAIQKRFIMPFLKGRDVIAQASSGTGKTSAFCV---CL 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+      R  + LIL PTRELA Q  D     G +  LT    IGG   E   ++LE G
Sbjct: 76  LQACDPHTRETQALILSPTRELAVQTQDLCNNIGHHMGLTAYACIGGKSTEEDIRRLESG 135

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L +N ++ LV+DEAD ML  GF   I +I  +VP   Q +L
Sbjct: 136 VHIVSGTPGRVFDMIRRKSLRVNGLKTLVLDEADEMLGKGFKAQIHDIYRMVP-PLQIIL 194

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  ++ +++E F+  P  I V     T ++++  FV+   + +K   L++  L   
Sbjct: 195 VSATLPADVLEMTEKFMTEPASILVKRDEITVDSVKQYFVSVDEEKNKFDVLME--LYDS 252

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+ + ++FCN +K V  L   + ++ F+V A+HG++ Q  R +I+  F+ G  ++++ +
Sbjct: 253 LTIAHAVVFCNTRKKVEQLAKKMTREKFAVTAMHGDMPQAERDEIMRQFRNGHSRVLITT 312

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V ++D+P   E YIHRIGRTGR GR G A T V  ++++ +  IE+
Sbjct: 313 DLWARGIDVERVSLVLSYDLPLAREQYIHRIGRTGRMGRTGLAITFVRHDELRLLRDIEQ 372

Query: 363 LIEKKVDWLNGDL 375
               +++ L  ++
Sbjct: 373 FYATQIEELPANI 385


>gi|321399813|emb|CAJ08508.2| putative ATP-dependent RNA helicase [Leishmania major strain
           Friedlin]
          Length = 615

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 134/377 (35%), Positives = 204/377 (54%), Gaps = 16/377 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA + L+P +   V    Y KPTP+Q   IP VL   D+   AQTG+GKTA++++P +  
Sbjct: 137 FATMALAPALAENVNRCRYQKPTPVQKYGIPCVLNGSDLMACAQTGSGKTAAYLIPAINF 196

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +        K       P  L+L PTREL+ Q+ +   K+         ++ GG     Q
Sbjct: 197 MLVNNLNRAKPTNSQAAPSALVLSPTRELSIQIYEEGRKFTYRTGFRCVVVYGGADPRHQ 256

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS--- 172
             +L RG  +L+ TPGR+ D F RG    +++  LV+DEADRMLDMGF P I+ I     
Sbjct: 257 IHELTRGCGLLVATPGRLSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRAIVQGPD 316

Query: 173 ---LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                P  RQTLL+SAT   E+Q+++  FL +   ++V    ST E I    V       
Sbjct: 317 SDMPPPGERQTLLYSATFPKEIQQMAREFLYHHHFLQVGRVGSTTENITQD-VRWVEDMD 375

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL+ L + Q   +  ++F  +K++   L   L +      +IHG+  QR R + L 
Sbjct: 376 KRGCLLEVLKEHQG--ERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALD 433

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G  +++VA+D+A+RGLDIP+V  V  +D+P+  ++Y+HRIGRTGRAG+ G A +  
Sbjct: 434 IFKSGVCRVLVATDVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGRTGRAGKRGTAISFF 493

Query: 350 AKEDIKHIDAIEKLIEK 366
             ++   +D +  L+ +
Sbjct: 494 NDKNRNIVDDLIPLLRE 510


>gi|281207155|gb|EFA81338.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 1157

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 135/390 (34%), Positives = 214/390 (54%), Gaps = 7/390 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + +A  GL  K+   +    Y KPTPIQ +TIP ++   ++ GIA+TG+GKT +F+LPM 
Sbjct: 512 LTWAQCGLPEKIHQLLKKNEYEKPTPIQAQTIPAIMSGRNIIGIARTGSGKTLAFLLPMF 571

Query: 61  T-ILEKGRARVRMPRT-LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +L + R +       LI+ PTRELA Q+    +K+ K   L V  + GG     Q   
Sbjct: 572 RHVLSQDRPKQGEGMVGLIMSPTRELALQIYSECKKFSKVLGLRVCCVYGGANIGEQIAD 631

Query: 119 LERGADVLICTPGRILDHF---NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           L+RGAD+++CTPGR++D     N+    +  +  LV+DEADRM D+GF P I  I   V 
Sbjct: 632 LKRGADIVVCTPGRMIDILCANNKRITNLRRVSFLVLDEADRMFDLGFGPQIMCIIDNVR 691

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT++FSAT   ++++V+   L  P  I     S     +E   V        +   L
Sbjct: 692 PDRQTVMFSATFPFKVEQVARKILVKPLEIIAGGRSIVCSDVEQ--VVEVRPSETRYRRL 749

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +LL +       +IF N++    NL   L + G+   ++HG+ DQ  R + +S+FK   
Sbjct: 750 IELLATWYHKGQILIFTNKQDATDNLFGLLSRAGYQCLSLHGSKDQTDRDETISDFKNKI 809

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +++A+ LA+RGLD+ D+  V N+D P+  E+Y+HR+GRTGRAG  G A+T V  ++ +
Sbjct: 810 KTILIATPLASRGLDVKDLNLVINYDCPDHLEDYVHRVGRTGRAGNKGTAYTFVLPDEGR 869

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
              +I K +E+    +  +L+ L    +++
Sbjct: 870 FAPSIIKALEQSGAKVPEELTKLGAEYQRL 899


>gi|264681499|ref|NP_001161137.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Rattus
           norvegicus]
 gi|261263564|gb|ACX55119.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Rattus
           norvegicus]
          Length = 652

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 137/393 (34%), Positives = 220/393 (55%), Gaps = 25/393 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+G TA+F+LP+L+
Sbjct: 174 NFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGCTAAFLLPILS 233

Query: 62  -------------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        + E GR   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 234 QIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 293

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 294 YGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 353

Query: 167 IQNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I    ++ P   R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 354 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 413

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             + +   K + L  LL +       ++F   KK   +L + L ++ ++  +IHG+  Q+
Sbjct: 414 --WVEELDKRSFLLDLLNATGRDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQK 471

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 472 DREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 531

Query: 343 GKAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371
           G A +   + ++    D ++ L+E K +   WL
Sbjct: 532 GLATSFFNERNLNITKDLLDLLVEAKQEVPSWL 564


>gi|297800452|ref|XP_002868110.1| hypothetical protein ARALYDRAFT_493213 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313946|gb|EFH44369.1| hypothetical protein ARALYDRAFT_493213 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 197/372 (52%), Gaps = 11/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  ++ A    GY KPTPIQ   IPL L   D+C  A TG+GKTA+F LP L  
Sbjct: 172 FMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLER 231

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     RV   R LIL PTRELA Q+    +K  +  ++   L++GG+    Q   L   
Sbjct: 232 LLFRPKRVFATRVLILTPTRELAVQIHSMIQKLAQFTDIKCGLIVGGLSVREQEVVLRSM 291

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D+++ TPGR++DH  N   + ++++ +L++DEADR+L  GF   I  +  L P  RQT+
Sbjct: 292 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTM 351

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVN-----TPSSTAETIEHCFVATYAQYSKKCALLQ 236
           LFSATMT+E++++ +  L  P R+  +      P  T E +         Q +   +L  
Sbjct: 352 LFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLCT 411

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +  +S+      IIF   K+    L       G     +HGN+ Q  R+  L  F++  +
Sbjct: 412 RTFKSK-----VIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEV 466

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             ++A+D+AARGLDI  V  V N+  P   ++Y+HR+GRT RAGR G A T V   D   
Sbjct: 467 DFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSL 526

Query: 357 IDAIEKLIEKKV 368
           +  I K +  K+
Sbjct: 527 LKVIAKKVGSKL 538


>gi|195475588|ref|XP_002090066.1| GE20836 [Drosophila yakuba]
 gi|194176167|gb|EDW89778.1| GE20836 [Drosophila yakuba]
          Length = 1464

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 121/338 (35%), Positives = 200/338 (59%), Gaps = 10/338 (2%)

Query: 16   VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM--P 73
            V  +GY  PTPIQ  +IP++    D+   AQTG+GKTA+F++P+L+ L      +    P
Sbjct: 1063 VTKSGYTVPTPIQKVSIPVIAAGRDLMACAQTGSGKTAAFLVPILSKLLDDPQDLEFGKP 1122

Query: 74   RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
            + +I+ PTRELA Q+     K+     L ++++ GG  F+ QN+ + +G  VLI TPGR+
Sbjct: 1123 QAVIVSPTRELAIQIFSEARKFAFESYLKISIVYGGTSFKHQNECITKGCHVLIATPGRL 1182

Query: 134  LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ---NITSLVPFTRQTLLFSATMTDE 190
            LD  +R  +   +   +V+DEADRMLDMGF   ++   N  ++ P   QTL+FSAT  +E
Sbjct: 1183 LDFVDRTFITFEDTRFVVLDEADRMLDMGFSESMRKFMNHQTMRP-EHQTLMFSATFPEE 1241

Query: 191  LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGII 250
            +Q+++  FL++   + +         ++   +    +++K+  L++ L +  D     I+
Sbjct: 1242 IQRLAGEFLKSYVFVTIGVVGGACSDVQQT-IYEVNKFAKRSKLMEILREQAD---GTIV 1297

Query: 251  FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
            F   K+    L   L +  F   +IHG+  Q  R + L +FK G++++++A+ +AARGLD
Sbjct: 1298 FVETKRGADFLASFLSETEFPTTSIHGDRLQSQREQALRDFKNGSMKVIIATSVAARGLD 1357

Query: 311  IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            I ++ HV NFD+PN  ++Y+HRIGRTGR G +G+A + 
Sbjct: 1358 IKNIKHVVNFDMPNNIDDYVHRIGRTGRVGNNGRATSF 1395


>gi|143455555|sp|Q0E3X4|RH35A_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 35A
 gi|51535964|dbj|BAD38045.1| putative DEAD-box protein abstrakt [Oryza sativa Japonica Group]
          Length = 627

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 142/401 (35%), Positives = 220/401 (54%), Gaps = 30/401 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF DL L   ++  + + G V+PTPIQ++ +P+VL   D+ GIA TG+GKT  FVLP++ 
Sbjct: 183 DFRDLRLPEPMLRKLREKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIM 242

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
           +  +    + +     P  +I+ P+RELA Q  D  E++           +   L IGG+
Sbjct: 243 VALQEEMMMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLVPLKEAGYPEIRPLLCIGGV 302

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              AQ   +++G  +++ TPGR+ D   + K+ ++N   L +DEADR++D+GF   I+ +
Sbjct: 303 DMRAQLDVVKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 362

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q  +++ L  P  + VN   + A  ++   V    +Y K
Sbjct: 363 FDHFKAQRQTLLFSATMPKKIQNFAKSALVKP--VIVNVGRAGAANLD---VIQEVEYVK 417

Query: 231 KCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A +  LL+  Q T    ++FC  K +V  +   L  +G    AIHG  DQ  R   + 
Sbjct: 418 EDARIIYLLECLQKTPPPVLVFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERENAIE 477

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T +
Sbjct: 478 FFKNGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 537

Query: 350 AKE-------DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
            K        D+KH      L+++    +   L+ LN PLE
Sbjct: 538 NKNQTETTLLDLKH------LLKEAKQRIPPVLAELNDPLE 572


>gi|21219042|ref|NP_624821.1| DEAD-box RNA-helicase [Streptomyces coelicolor A3(2)]
 gi|5763955|emb|CAB53334.1| putative DEAD-box RNA-helicase [Streptomyces coelicolor A3(2)]
          Length = 439

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 124/356 (34%), Positives = 193/356 (54%), Gaps = 5/356 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +V  +   G  +P PIQ  T+P  L   DV G A+TG+GKT +F L +L  
Sbjct: 9   FDGLGLPPVLVETMTSLGVTRPFPIQAATLPEALAGRDVLGRARTGSGKTLAFGLALLAG 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  + P  L+L  TRELA QV+D    Y +   + +  ++GG+    Q + L  G
Sbjct: 69  TAGRRAEPKRPLALVLVSTRELAQQVSDALAPYARALGVRLTTVVGGLSINRQTQALRDG 128

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D  +R    +N + I V+DEAD+M D+GF+P +  I   VP   Q LL
Sbjct: 129 AEVVVATPGRLTDLVSRRDCHLNQVRITVLDEADQMCDLGFLPQVSGILDQVPSDGQRLL 188

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  ++ ++  + L +P  + V+  S++  T+EH  +  +   + K A   ++    
Sbjct: 189 FSATLDGDVDQLVRDHLHDPVPVSVDPASASVSTMEHHVLTVHP--ADKYATATEIAARD 246

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   ++F + K  V      L   G S  A+H    Q  R   L+ F EG + ++VA+
Sbjct: 247 GRV---LMFLDTKAGVDRFTRELRAAGVSAGALHSGKSQPQRTHTLARFVEGGVTVLVAT 303

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++AARG+ + D+  V N D P  A++Y+HR GRT RAGR G   TLV  +  + ++
Sbjct: 304 NVAARGIHVDDLDLVVNVDPPADAKDYLHRGGRTARAGRAGSVVTLVTPDQRREVN 359


>gi|328868347|gb|EGG16725.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 615

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 133/360 (36%), Positives = 203/360 (56%), Gaps = 15/360 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD+ + P++       G+  PT IQ ++ P+VL  +D+ G+A TG+GKT +F+LP L  
Sbjct: 116 FADIEI-PRIFAHAF-TGFTNPTVIQAQSWPIVLSGNDMVGVAATGSGKTLAFILPSLME 173

Query: 63  LEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + K   R     P  L++ PTRELA Q+ D      K  ++ +  + GG     QN  L 
Sbjct: 174 IIKVPKRGYGATPLALVMAPTRELAKQIEDVARTVTKGTSIRMLCVYGGAGKGQQNSVLR 233

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+++ TPGR+ D      L  + ++ LV+DEADRMLDMGF+P I+ I   +P   QT
Sbjct: 234 SGVDLIVGTPGRLNDILTPRHL--STVKFLVLDEADRMLDMGFMPQIERIIRQIPEQHQT 291

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTP------SSTAETIEHCFVATYAQYSKKCAL 234
           ++FSAT   E+Q +S  FL+NP ++ V T       + T   I++   +    +      
Sbjct: 292 MMFSATWPKEVQGLSSKFLRNPLKLTVGTGELQANVNVTQHVIDNGAFSPNEMFEDLGKR 351

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI-HGNIDQRSRMKILSNFKE 293
           +Q +L+S++ +   IIFCN K+    + + L+ +    C + H   +Q  R + L  F+ 
Sbjct: 352 VQDMLKSREDLL--IIFCNTKRKCDQVSNFLDMKLQITCGVLHSGREQPQRERSLRQFRH 409

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             I ++VA+D+AARGLDIP V  V N D P   E+Y+HRIGRTGRAG  G A+T +++ D
Sbjct: 410 HEINVLVATDVAARGLDIPKVKAVINLDFPLGIEDYVHRIGRTGRAGAKGDAYTYISQTD 469


>gi|167919550|ref|ZP_02506641.1| ATP-dependent RNA helicase [Burkholderia pseudomallei BCC215]
          Length = 390

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 119/300 (39%), Positives = 181/300 (60%), Gaps = 11/300 (3%)

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLERGADVLIC 128
           V  P  L+L PTRELA QV      YGK+   L    ++GG+ +  Q   L +  ++L+ 
Sbjct: 9   VARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVA 68

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR+LDH  RG++ ++ +++LV+DEADRMLDMGFI  I  I +  P TRQT+LFSAT+ 
Sbjct: 69  TPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATRQTMLFSATLD 128

Query: 189 DELQKVSENFLQNPKRIEVN----TPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
            ++  ++   L++P+RIE+     + S+ A+T+ +           K  LL  LL+    
Sbjct: 129 GKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYV-----DDRDHKDRLLDHLLRDV-A 182

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
           +   IIF   K +   L   L   GF   A+HG++ Q +R + +   +E  ++++VA+D+
Sbjct: 183 LDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVLVATDV 242

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           AARG+DIP + HVFN+D+P  AE+Y+HRIGRTGRAGR G A +LV   +   +  IE+ +
Sbjct: 243 AARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTAVSLVHHAEQGALKRIERFV 302


>gi|74693203|sp|Q755N4|DBP2_ASHGO RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 557

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 123/356 (34%), Positives = 196/356 (55%), Gaps = 11/356 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V + G+ KPT IQ +  P+ L   D+ G+A TG+GKT S+ LP +  
Sbjct: 116 FDEAGFPEYVLKEVKEEGFEKPTAIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVH 175

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+G++  +    + GG+P   Q 
Sbjct: 176 INAQPLLSPGDG----PVVLVLAPTRELAVQIQKECSKFGRSSRIRNTCVYGGVPKSQQI 231

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+RG ++LI TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 232 RDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 291

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E+Q+++ ++L +P ++ + +    A           + + K+  L++
Sbjct: 292 DRQTLMWSATWPKEVQQLARDYLHDPIQVNIGSLELAASHTITQLGEVVSDFDKRDRLVK 351

Query: 237 QL-LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L + S+D     II  + K+    +   L + G+   AIHG    +     L++++ G 
Sbjct: 352 HLEIGSKDKDSKIIILHSTKRTCDEITSYLRQDGWPALAIHGPTPLQDIDCTLNDYRTGR 411

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
             +MVA+D+ ARG+D+  +  V N+D+P   E+Y+HRIGRTGRAG  G A +   +
Sbjct: 412 SPIMVATDVVARGIDVKGINFVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTE 467


>gi|294880401|ref|XP_002768997.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
 gi|239872070|gb|EER01715.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
          Length = 689

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 130/364 (35%), Positives = 204/364 (56%), Gaps = 20/364 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   +V  +   G+ +PTP+Q  +IP +  R D+   AQTG+GKT ++++P +  
Sbjct: 204 FNDGEVDSHIVENINRCGFDRPTPVQKYSIPTLTARRDLMSCAQTGSGKTGAYLIPAIHN 263

Query: 63  L------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           +            + GR R   P TLIL PTRELA+Q+ +   K+  N  +   ++ GG 
Sbjct: 264 MLVDGPPNATSSGDYGR-RKAYPVTLILSPTRELASQIHEEARKFCYNTGIRPVVVYGGA 322

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++LERG D+L+ TPGR+ D   R ++ +  I++L+ DEADRMLDMGF P I+ I
Sbjct: 323 DVRTQLRELERGCDILVATPGRLSDLMERFRVSLCQIKMLIFDEADRMLDMGFEPQIRRI 382

Query: 171 TSL--VPFTR---QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
                +P +R   Q+ +FSAT   E+Q+++ +FL+    + V    ST  +I+   +  Y
Sbjct: 383 VEQEDMPSSRDGRQSAMFSATFPKEIQQLARDFLKEYIYLTVGRVGSTHGSIKQ--IMRY 440

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
              + K   L ++L+ Q      ++F   K+    + + L +  +   +IHG+  Q  R 
Sbjct: 441 VDENSKLRDLYRVLEEQTEEGLTLVFVETKRKADEIENMLRRDRYPATSIHGDRSQWERE 500

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L  FK G + ++VA+D+AARGLDI  V  V N+D+PN  ++Y+HRIGRTGRAG  G A
Sbjct: 501 EALKAFKSGELPILVATDVAARGLDISHVNLVINYDLPNNIDDYVHRIGRTGRAGNLGTA 560

Query: 346 FTLV 349
              V
Sbjct: 561 IAFV 564


>gi|73965241|ref|XP_861914.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 15 [Canis
           familiaris]
          Length = 620

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 133/380 (35%), Positives = 206/380 (54%), Gaps = 20/380 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 154 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 209

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269

Query: 175 PFT------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP--SSTAETIEHCFVATYA 226
             +      RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    
Sbjct: 270 RVSTPKNPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDV 329

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           +  +K   L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  
Sbjct: 330 EKDEKLIRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDW 388

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
           +L+ FK G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+
Sbjct: 389 VLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAY 448

Query: 347 TLVAKEDIKHI-DAIEKLIE 365
           T     +IK + D I  L E
Sbjct: 449 TFFTPNNIKQVSDLISVLRE 468


>gi|19173435|ref|NP_597238.1| P68-LIKE PROTEIN (DEAD BOX FAMILY OF RNA HELICASES)
           [Encephalitozoon cuniculi GB-M1]
 gi|74664187|sp|Q8SRB2|DBP2_ENCCU RecName: Full=ATP-dependent RNA helicase DBP2
 gi|19171024|emb|CAD26414.1| P68-LIKE PROTEIN (DEAD BOX FAMILY OF RNA HELICASES)
           [Encephalitozoon cuniculi GB-M1]
          Length = 495

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 127/347 (36%), Positives = 201/347 (57%), Gaps = 20/347 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + G S +VV ++++ G+ +PT IQ +  P+ L   D+ GIAQTG+GKT SF+LP L +
Sbjct: 89  FEEAGFSSEVVSSLVEKGFSEPTAIQGQGWPMALSGRDMVGIAQTGSGKTLSFILPAL-V 147

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             K +  +R    P  L+L PTREL  Q+    +++   +NL    + GG   + Q + L
Sbjct: 148 HAKDQQPLRRGDGPIVLVLAPTRELVMQIKKVVDEFCGMFNLRSTAVYGGASSQPQIRAL 207

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA+V+I TPGR++D  ++G   ++ +  LV+DEADRMLDMGF P ++ I       RQ
Sbjct: 208 HEGAEVVIATPGRLIDLHDQGHAPLSRVTFLVLDEADRMLDMGFEPQLRKIIPKTNANRQ 267

Query: 180 TLLFSATMTDELQKVSENFLQNPKRI-----EVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           TL++SAT   E++ ++E+++    ++     E+ T S   + +E C     +   K+  L
Sbjct: 268 TLMWSATWPREVRGLAESYMNEYIQVVVGNEELKTNSKIKQIVEVC-----SGREKEDKL 322

Query: 235 LQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           +  L    D  K    I+FCN K+   +L + L + G+   A+HG+  Q  R K+L +F+
Sbjct: 323 IGVL----DNFKGDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFR 378

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            G   +++A+++A RGLD+ DV  V NFD P   E+Y+HRIGRT R 
Sbjct: 379 SGRRPILIATEVAGRGLDVNDVKLVINFDFPGSCEDYVHRIGRTARG 425


>gi|156049231|ref|XP_001590582.1| hypothetical protein SS1G_08322 [Sclerotinia sclerotiorum 1980]
 gi|154692721|gb|EDN92459.1| hypothetical protein SS1G_08322 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 828

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 133/386 (34%), Positives = 207/386 (53%), Gaps = 37/386 (9%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +GL+  ++ A+   G+  PTPIQ KTIPLVL   DV G+A+TG+GKTA+FV+PM+  L  
Sbjct: 1   MGLNSHLLKAISRKGFNVPTPIQRKTIPLVLDNQDVVGMARTGSGKTAAFVIPMIEKLRA 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
              RV   R LI+ P+RELA Q     +++G+  +L   LL+GG   E Q   +    D+
Sbjct: 61  HSVRV-GARALIMSPSRELALQTLKVVKEFGRGTDLKCVLLVGGDSLEEQFGFMAANPDI 119

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           +I TPGR L       L +++++ +V DEADR+ +MGF   +  I   +P +RQTLLFSA
Sbjct: 120 VIATPGRFLHLKVEMSLDLSSMKYVVFDEADRLFEMGFAAQLGEILHALPISRQTLLFSA 179

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           T+   L + +   LQ P  + ++  S  +  ++  F +      K+ ALL  +LQ    M
Sbjct: 180 TLPKSLVEFARAGLQEPSLVRLDAESKVSPDLQSAFFSVKGA-EKEGALL-HILQDLVKM 237

Query: 246 KNG----------------------------------IIFCNQKKNVVNLCHSLEKQGFS 271
             G                                  IIF   K +V  L   L   GF+
Sbjct: 238 PTGLPENALNATDNFSKKRKRGPDGPTKKLKPTEHSTIIFAATKHHVDYLASLLRMSGFA 297

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
           V   +G++DQ +R   + +F+ G   ++V +D+AARG+DIP + +V N+D P + + ++H
Sbjct: 298 VSHAYGSLDQTARNIQVEDFRTGKSNILVVTDVAARGIDIPVLANVINYDFPPQPKVFVH 357

Query: 332 RIGRTGRAGRHGKAFTLVAKEDIKHI 357
           R+GRT RAG+ G +++LV   D  ++
Sbjct: 358 RVGRTARAGQRGWSYSLVRDTDAPYL 383


>gi|119179097|ref|XP_001241172.1| hypothetical protein CIMG_08335 [Coccidioides immitis RS]
 gi|118597485|sp|Q1DMX8|PRP28_COCIM RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
          Length = 817

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 126/384 (32%), Positives = 205/384 (53%), Gaps = 35/384 (9%)

Query: 3   FADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           + + GL PK +  ++D  GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 379 WGESGL-PKRLLEIIDKVGYKDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 437

Query: 62  IL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +       E    +   P  +IL PTRELA Q+ +   K+       V  ++GG   E 
Sbjct: 438 YIAELPRLDEFEWRKSDGPYAIILAPTRELAQQIENEARKFCNPLGFNVVSIVGGHSLEE 497

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q+  L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 498 QSFSLRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 557

Query: 175 PFT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNT 209
           P +                         RQT++++ATM   +++++  +L+ P  + +  
Sbjct: 558 PVSNEKPDTEEAEDARAMSQHLGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 617

Query: 210 PSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269
                +T+E   V   +   K+   L  +L S +     I+F N K+N   +   +++ G
Sbjct: 618 IGEAVDTVEQ-RVEFISGEDKRKKRLADILASGEFRPPIIVFVNIKRNCDAVARDIKQMG 676

Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329
           +S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y
Sbjct: 677 YSSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESY 736

Query: 330 IHRIGRTGRAGRHGKAFTLVAKED 353
            HRIGRTGRAG+ G A T +  ED
Sbjct: 737 THRIGRTGRAGKSGVAITFLGNED 760


>gi|328855473|gb|EGG04599.1| hypothetical protein MELLADRAFT_78286 [Melampsora larici-populina
           98AG31]
          Length = 646

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 138/393 (35%), Positives = 217/393 (55%), Gaps = 25/393 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  + P ++  +  A Y  PTP+Q  ++P+V    D+   AQTG+GKT  F+ P+++
Sbjct: 161 EFTNPPMDPHLLANIELARYKTPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPIIS 220

Query: 62  I-LEKGR--------------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
               KG                R   P  LIL PTREL +Q+ +   K+     +  A++
Sbjct: 221 AAFAKGPLPTAGMQAQGGGYGKRKAFPTALILAPTRELVSQIHEEARKFTYRSWVRPAVV 280

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q +++E G D+L  TPGR++D   RG++ ++NI  LV+DEADRMLDMGF P 
Sbjct: 281 YGGAEVGQQLRQIENGCDLLSATPGRLVDLIERGRISLSNIRYLVLDEADRMLDMGFEPQ 340

Query: 167 IQNITSL--VP--FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I +   +P    RQTL+FSAT   ++Q ++++FL++   + V    ST+E I     
Sbjct: 341 IRRIVTGEDMPGVHERQTLMFSATFPRDIQMLAKDFLKDYIFLSVGRVGSTSENITQK-- 398

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             Y + + K ++L  +L S       ++F   K+    L   L    F+  +IHG+  QR
Sbjct: 399 VEYVEDADKRSVLLDILTSMPQGGLTLVFVETKRMADMLEGFLVSSNFAATSIHGDRTQR 458

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+     +MVA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  
Sbjct: 459 ERERALETFRSSRTPIMVATAVAARGLDIPNVTHVVNYDLPSDIDDYVHRIGRTGRAGNT 518

Query: 343 G--KAFTLVAKEDI--KHIDAIEKLIEKKVDWL 371
           G   AF     ++I  + I+ + +  ++  DWL
Sbjct: 519 GVSTAFFNRGNKNIVRELIELLREAHQEIPDWL 551


>gi|242803555|ref|XP_002484198.1| ATP dependent RNA helicase (Dbp10), putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218717543|gb|EED16964.1| ATP dependent RNA helicase (Dbp10), putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 945

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 135/407 (33%), Positives = 220/407 (54%), Gaps = 43/407 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+ +++ A+   G+  PTPIQ KTIP++L   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 98  FQAMGLNAQLLKAIARKGFSVPTPIQRKTIPVILDDQDVVGMARTGSGKTAAFVIPMIEK 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +V + R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 158 LKSHSGKVGV-RGLILSPSRELALQTLKVVKELGRGTDLKAVLLVGGDSLEEQFSLMVGN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P TRQTLL
Sbjct: 217 PDIVIATPGRFLHLKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPATRQTLL 276

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ-- 240
           FSAT+   L + +   LQ+P  I ++T    +  +++ F +      K+ ALL  L +  
Sbjct: 277 FSATLPKSLVEFARAGLQDPSLIRLDTEGKISPDLQNAFFSVKTA-DKEGALLYILHEVI 335

Query: 241 ----------------------------SQDTMKNG-----------IIFCNQKKNVVNL 261
                                         D+ K G           IIF   K +V  +
Sbjct: 336 KIPTGPTGVSLRSNEEDDDKGKRNKKRKRSDSNKPGKNTESPTKHSTIIFAATKHHVDYI 395

Query: 262 CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321
              L + GF+V   +G++DQ +R   +  F+ G   ++V +D+AARG+DIP + +V N+D
Sbjct: 396 VSILREAGFAVSYAYGSLDQTARNIQVQRFRNGATHILVVTDVAARGIDIPILANVINYD 455

Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            P++ + ++HR+GRT RAG+ G +++LV   D  ++  ++  + +K+
Sbjct: 456 FPSQPKVFVHRVGRTARAGQKGWSYSLVRDADAPYLLDLQLFLGRKL 502


>gi|13542134|ref|NP_111822.1| RNA helicase [Thermoplasma volcanium GSS1]
          Length = 376

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 130/362 (35%), Positives = 203/362 (56%), Gaps = 16/362 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F +  L  +++ ++   GY +PT +Q   IP+ L   D+   ++TG+GKTA++++P++  
Sbjct: 7   FEEFNLRNELIESIRGTGYSEPTEVQSMAIPIALAGSDLVVRSKTGSGKTAAYLIPIINN 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T  EKG       R LIL PTRELA QVA   E  GK   +   ++ GG+    Q + + 
Sbjct: 67  TAKEKG------IRALILLPTRELAVQVAKVSEALGKRSGIRTVVVYGGVSINKQIELIL 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA++++ TPGR LD  +RG L  + +   V+DEAD MLDMGFI  I+ I +++P  RQ+
Sbjct: 121 RGANIIVGTPGRTLDLIDRGILNFDKVSYFVLDEADEMLDMGFIEDIKKIINVLPVERQS 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT+  E+ ++++ F+ N + + ++    T   I+H +       S++   L+ L  
Sbjct: 181 FLFSATIPSEIIELAKGFMHNEEILFLSKDEVTVNGIDHNYAV-----SRRERKLRTLFS 235

Query: 241 SQDTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             D  K    IIF   K     +  +L   G     +HG++ Q  R K L  FK    + 
Sbjct: 236 YIDKYKPEKSIIFSRTKAGANMIYEALINHGQDAVIMHGDLTQAQREKALYRFKNFG-RF 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDI  +  + N+DVP+    Y+HR+GRT R G  G+AFT+V   +I  ID
Sbjct: 295 LVATNVAARGLDIGGISDIINYDVPDDPRVYVHRVGRTARMGAAGRAFTIVEDREIGSID 354

Query: 359 AI 360
            I
Sbjct: 355 MI 356


>gi|158513663|sp|A2YV85|RH29_ORYSI RecName: Full=DEAD-box ATP-dependent RNA helicase 29; Short=RNAH
          Length = 851

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 125/356 (35%), Positives = 205/356 (57%), Gaps = 3/356 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +V   V   GY  PTPIQ K +PL+L  HD+  +A+TG+GKTA+F++PM+  
Sbjct: 51  FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQR 110

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +  A   + R LIL PTR+LA Q     ++ GK  +L ++L++GG   E+Q ++L   
Sbjct: 111 LRRHDAGAGI-RALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAEN 169

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR++ H    + L +  +E +V DEAD +  +G I  + +I   +  TRQTL
Sbjct: 170 PDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSLFSLGLIQQLHDILHKLSDTRQTL 229

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L   ++  L++P+ + ++     +  ++  F  T  Q  K  ALL  + + 
Sbjct: 230 LFSATLPQALADFAKAGLRDPQIVRLDLDKKISPDLKLAFF-TLRQEEKLAALLYLVRER 288

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  IIF + K +V  L     ++G      +G +DQ +R   +S F+     +++ 
Sbjct: 289 ISSEEQTIIFVSTKHHVEFLNILFREEGLEPSLSYGAMDQEARNIHISKFRARKTMILIV 348

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +D+AARGLDIP + +V N+D P + + ++HR+GR  R GR G A+T V  ED+ ++
Sbjct: 349 TDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRSGTAYTFVTSEDMAYL 404


>gi|196015847|ref|XP_002117779.1| hypothetical protein TRIADDRAFT_51106 [Trichoplax adhaerens]
 gi|190579664|gb|EDV19755.1| hypothetical protein TRIADDRAFT_51106 [Trichoplax adhaerens]
          Length = 569

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 141/382 (36%), Positives = 211/382 (55%), Gaps = 26/382 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++ ++   G   PTPIQI+ IP VL   D+ GIA TG+GKT  F LP++  
Sbjct: 130 FKEMKFPKSIIHSLKKQGITHPTPIQIQGIPAVLFGRDMIGIAFTGSGKTLVFTLPLIMF 189

Query: 63  L---EKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
               E G   VR   P  LI+ P+RELA Q  +  +++ +         +   L IGGI 
Sbjct: 190 ALEQETGLPFVRNEGPYGLIMCPSRELARQTYNTIKRFCQALTADGHPEIRTMLCIGGIS 249

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q   + RG  + + TPGR++D  ++  L ++    L IDEADRM+DMGF   ++ + 
Sbjct: 250 MKEQTDAMRRGVHIAVATPGRLMDMLDKKYLSLDICRYLAIDEADRMIDMGFEEDMRTVF 309

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + VN   + A  ++   V    +Y K+
Sbjct: 310 SYFKAQRQTLLFSATMPKKIQNFAKSALVRP--VTVNVGRAGAANLD---VIQEVEYVKQ 364

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +KK+V ++   L  +G    AIHG  DQ  R   +++
Sbjct: 365 EAKIVYLLECLQKTGPPVLIFAEKKKDVDDIHEYLLLKGVEAVAIHGGKDQEEREFAITS 424

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK     +++A+D+A++GLD PDV HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 425 FKLSKKDVLIATDVASKGLDFPDVKHVINYDMPEDIENYVHRIGRTGRCGKTGLATTFIN 484

Query: 351 KE-------DIKH--IDAIEKL 363
           K        D+KH  I+A +KL
Sbjct: 485 KSSSEYVLLDLKHLLIEAKQKL 506


>gi|260774607|ref|ZP_05883519.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260610401|gb|EEX35608.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 408

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 212/368 (57%), Gaps = 7/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  ++ A L A    PT IQ   IP++L   D+  +AQTG+GKT ++ LP+L
Sbjct: 1   MTFSELNLASSLLSA-LPAELHTPTTIQQLAIPVILSGRDLLALAQTGSGKTFAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +K        +TLI+ PTRELA QV+       K  ++ V  + GG+  + Q  +L 
Sbjct: 60  ---QKTLPMTPHIQTLIIVPTRELATQVSQALGLIAKPMHIDVCPVCGGVDQQWQQDQLA 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+LD   +  + +++++ LV+DEADR+L+MGF P +Q I + +P  +QT
Sbjct: 117 QNPQLIVATPGRLLDLIEQQIINLSSLQHLVLDEADRLLEMGFWPDVQRIMAHLPAKKQT 176

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL++ +   L +P +I  N P+ T   IE            K  +L  LL+
Sbjct: 177 LLFSATLLPELEEKALQPLNDPIKISANPPNQTVPEIEEQLY--LVNKGSKAQVLIHLLK 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F + + N   L   L K G  V A+HGN DQ  R +IL+ FK+  I++++
Sbjct: 235 -QHHWSQVLVFISARDNADALAKKLLKAGIRVAALHGNKDQTEREQILTQFKQQKIEVLI 293

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NFD+P     YIHR+GRT RAG+ G A +LV   +   +DAI
Sbjct: 294 ATDLLARGIHIEQLPVVINFDLPPSPAVYIHRVGRTARAGQTGLALSLVCHNENAILDAI 353

Query: 361 EKLIEKKV 368
            +L ++ +
Sbjct: 354 RQLTQRPL 361


>gi|42524815|ref|NP_970195.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39577025|emb|CAE78254.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 549

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 140/397 (35%), Positives = 216/397 (54%), Gaps = 26/397 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L  +++ A+    Y   TPIQ + IP VL   DV G+AQTGTGKTA+FV+P++
Sbjct: 1   MKFSELNLDSQLLSAIQKLNYDDCTPIQEQAIPPVLDGKDVAGLAQTGTGKTAAFVIPVM 60

Query: 61  ------------------TILEKGRARVRMPR--TLILEPTRELAAQVADNFEKYGKNYN 100
                              ++EK   +   P+   LIL PTRELA QV DN  K   +  
Sbjct: 61  ERILRARPIQGEVTEEQKALIEKRAYKDWKPQNFVLILVPTRELAEQVQDNINKLSVDSG 120

Query: 101 LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160
           L    + GG  ++ Q + L+ G + ++ TPGR++D +    + +  +  +V DEADRM D
Sbjct: 121 LRGFAIYGGTGYDKQKEALKNGVEFIVATPGRLIDLYKEHLVDLKQVRAIVFDEADRMFD 180

Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
           MGF   ++ I   VP  RQ L+FSAT+  ++      F   P  I ++   + A+ ++  
Sbjct: 181 MGFKDDMKYILQRVPRERQLLVFSATLNFDVLNTIYQFGSEPVEINISRDQAKADNVKDQ 240

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
               +    +K   L  LL+  +  K  IIF N K +V  +   L + G    AI   + 
Sbjct: 241 IF--HVGSDEKPQHLLSLLKVHNP-KQAIIFTNFKMSVERIAKFLVENGVPAMAISSLLT 297

Query: 281 QRSRMKILSNFK-EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
           Q  R +++  FK E  + ++VA+D+AARGLDI  V  V N+++P  +E+Y+HRIGRTGRA
Sbjct: 298 QAQRNRVIEQFKAENDMNVLVATDVAARGLDIKGVDMVVNYELPMDSESYVHRIGRTGRA 357

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVD--WLNGD 374
           G  G+AF+LV  +DI+ +  IE  ++ K++  +L  D
Sbjct: 358 GTTGQAFSLVGDKDIESLGRIEDYLKHKIEIGYLEND 394


>gi|115476424|ref|NP_001061808.1| Os08g0416100 [Oryza sativa Japonica Group]
 gi|158513705|sp|A3BT52|RH29_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 29; Short=RNAH
 gi|113623777|dbj|BAF23722.1| Os08g0416100 [Oryza sativa Japonica Group]
 gi|222640554|gb|EEE68686.1| hypothetical protein OsJ_27320 [Oryza sativa Japonica Group]
          Length = 851

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 125/356 (35%), Positives = 205/356 (57%), Gaps = 3/356 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +V   V   GY  PTPIQ K +PL+L  HD+  +A+TG+GKTA+F++PM+  
Sbjct: 51  FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQR 110

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +  A   + R LIL PTR+LA Q     ++ GK  +L ++L++GG   E+Q ++L   
Sbjct: 111 LRRHDAGAGI-RALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAEN 169

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR++ H    + L +  +E +V DEAD +  +G I  + +I   +  TRQTL
Sbjct: 170 PDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSLFSLGLIQQLHDILHKLSDTRQTL 229

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L   ++  L++P+ + ++     +  ++  F  T  Q  K  ALL  + + 
Sbjct: 230 LFSATLPQALADFAKAGLRDPQIVRLDLDKKISPDLKLAFF-TLRQEEKLAALLYLVRER 288

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  IIF + K +V  L     ++G      +G +DQ +R   +S F+     +++ 
Sbjct: 289 ISSEEQTIIFVSTKHHVEFLNILFREEGLEPSLSYGAMDQEARNIHISKFRARKTMILIV 348

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +D+AARGLDIP + +V N+D P + + ++HR+GR  R GR G A+T V  ED+ ++
Sbjct: 349 TDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRSGTAYTFVTSEDMAYL 404


>gi|84995732|ref|XP_952588.1| eukaryotic translation initiation factor 4a [Theileria annulata
           strain Ankara]
 gi|65302749|emb|CAI74856.1| eukaryotic translation initiation factor 4a, putative [Theileria
           annulata]
          Length = 400

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 124/374 (33%), Positives = 211/374 (56%), Gaps = 6/374 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L+  ++  +   G+ +P+ IQ + I  +++ +D  G AQ+GTGKTA+F +  L I
Sbjct: 30  FDALKLNEDLLRGIYSYGFERPSAIQQRGIKPIIENYDTIGQAQSGTGKTATFSIAALQI 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +      V   + LIL PTRELA Q+       G    +     +GG        KL+ G
Sbjct: 90  INYD---VMSCQILILAPTRELAQQIQKVVLALGDYLKVQCHACVGGTVVRDDVHKLKAG 146

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ D   +  LL + +++ ++DEAD ML  GF   IQ++   +P   Q  L
Sbjct: 147 VHMVVGTPGRVYDMIEKKALLTDKMKLFILDEADEMLSRGFKGQIQDVFKRLPPDIQVAL 206

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E+ +++  F+++PKRI V     T E I+  ++    +Y  K   L  L +S 
Sbjct: 207 FSATMPNEILELTTKFMRSPKRILVKKDELTLEGIKQFYILIDKEY--KFETLCDLYESV 264

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   II+CN ++ V  L   ++++ F+V ++HG++ Q+ R  I+  F+ G+ ++++ +
Sbjct: 265 -TITQAIIYCNTRRKVDYLTLKMQEKDFTVSSMHGDMGQKERDLIMREFRSGSTRVLITT 323

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   +NYIHRIGR+GR GR G A   V  +D++ + +IE 
Sbjct: 324 DLLARGIDVQQVSLVINYDLPMSPDNYIHRIGRSGRFGRKGVAINFVTHQDMETMKSIEN 383

Query: 363 LIEKKVDWLNGDLS 376
               +++ +  D++
Sbjct: 384 YYNTQIEEMPADIA 397


>gi|71031306|ref|XP_765295.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68352251|gb|EAN33012.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 470

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 131/383 (34%), Positives = 214/383 (55%), Gaps = 24/383 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+  ++  A  + G+ +PT IQI+ IP+ L   D+ G+A+TG+GKTA+F +P+L  
Sbjct: 43  FEDLGVCVELCRACKELGWKRPTKIQIEAIPIALSGKDIIGLAETGSGKTAAFTIPILQK 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +   R+    +LIL PTREL+ Q+ +     G    L V L++GG+   +Q  +L + 
Sbjct: 103 LLEKPQRLF---SLILAPTRELSLQIKEQLISLGSEIGLDVCLILGGLDMVSQALQLSKK 159

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++ +PGRI DH    K   +  I+ LV+DEAD++L   F   +  I + +P  + T 
Sbjct: 160 PHIIVGSPGRIADHLQNTKGFSLETIKYLVLDEADKLLSTDFDDSLNKIITSLPKDKVTY 219

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLL 239
           L+SATMT ++ K+ +  L  P +I VNT   T+E +  ++  +    +Y+    +L +  
Sbjct: 220 LYSATMTSKITKLQKVTLMKPIQINVNTKYHTSEHLIQKYLLIPLKFKYTYLACILWKY- 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ-- 297
            S  T+   ++FCN       +   L+   F    +HG + Q  R+  L++FK G +Q  
Sbjct: 279 -STSTI---MVFCNTCLTSQKVTLFLQNLSFKSVCLHGKLSQIQRLNSLNSFKTGKLQPI 334

Query: 298 -----------LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
                      ++V +D+ +RGLDIP V  V NFDVPN +++YIHR+GRT RAG+ G + 
Sbjct: 335 PQPHIISGLFNILVVTDVGSRGLDIPFVDLVINFDVPNTSKDYIHRVGRTARAGKSGISL 394

Query: 347 TLVAKEDIKHIDAIEKLIEKKVD 369
           TL+ + DI+     E  + KK++
Sbjct: 395 TLITQYDIESFQRTEYALNKKLE 417


>gi|15639757|ref|NP_219207.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|3323078|gb|AAC65738.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum str.
           Nichols]
          Length = 649

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 149/460 (32%), Positives = 241/460 (52%), Gaps = 41/460 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59
           + F +LGL+ + + AV   G+  PTPIQ   IP +L    ++   A+TGTGKTA+F LP+
Sbjct: 46  VSFEELGLNEQSLAAVRLKGFRCPTPIQAAAIPRLLAGDANIIAKARTGTGKTAAFGLPL 105

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I E G +    P  L+L PTRELAAQVA             +  + GG+    Q + L
Sbjct: 106 --IQELG-SPCEHPGALVLVPTRELAAQVASELSSLRIQKIPRIHTVYGGVSIAEQLRNL 162

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G ++++ T GR++DH  RG L ++ +   ++DEAD ML+MGF+  I++I S      +
Sbjct: 163 EQGGEIIVGTTGRVIDHIERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDAR 222

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  ++  ++  F+ + + +E  TP      IE        + + K   L +L+
Sbjct: 223 VLMFSATMPRQILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVV--RDADKIEALVRLI 280

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D    G++FC  K +   +  SL+++ + V A+HG+I Q  R KIL  F+    +++
Sbjct: 281 DVSDNF-YGLVFCQTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARIL 339

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV N+ +P+ +  Y HR+GRTGRAG  G A + V   + + ++ 
Sbjct: 340 VATDVAARGIDIEGITHVVNYSIPHDSATYTHRVGRTGRAGSQGIAISFVRPHETRRMEY 399

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           + K         NG+L +   PL      +H   +K   I             +SS K+H
Sbjct: 400 LSK-------HCNGELKASTVPL-----VEHILTQKEGRI-------------FSSLKTH 434

Query: 420 IPLKESEKISK---------LQQDIQENDADSLGFRGNMP 450
           +    SE +           LQ+D++   A++LG   ++P
Sbjct: 435 LCQLLSEGVHGTFTRFAQRLLQEDLKARVAEALGTSADVP 474


>gi|268565371|ref|XP_002639425.1| Hypothetical protein CBG04018 [Caenorhabditis briggsae]
 gi|187036206|emb|CAP24812.1| hypothetical protein CBG_04018 [Caenorhabditis briggsae AF16]
          Length = 393

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 128/367 (34%), Positives = 204/367 (55%), Gaps = 12/367 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   G+ KP+ IQ + IP +L+  DV   AQ+GTGKTA+F + +L  
Sbjct: 29  FDKMGLREELLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQS 88

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 89  LD---TQVRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYG 145

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   + +I   +P   Q +L
Sbjct: 146 QHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVL 205

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K       L+   
Sbjct: 206 LSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWK----FDTLIDLY 261

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           DT+ +          V  L   +++  F+V ++HG+++Q+ R +++  F+ G  ++++++
Sbjct: 262 DTLTSSSFL-----KVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGNTRVLIST 316

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ ARGLD+P V  V N+D+PN  E YIHRIGR+GR GR G A   V ++D++ +  IE+
Sbjct: 317 DVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDIEQ 376

Query: 363 LIEKKVD 369
               ++D
Sbjct: 377 YYSTQID 383


>gi|291060131|gb|ADD72866.1| dead-box ATP-dependent rna helicase ydbr [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 644

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 149/460 (32%), Positives = 241/460 (52%), Gaps = 41/460 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59
           + F +LGL+ + + AV   G+  PTPIQ   IP +L    ++   A+TGTGKTA+F LP+
Sbjct: 41  VSFEELGLNEQSLAAVRLKGFRCPTPIQAAAIPRLLAGDANIIAKARTGTGKTAAFGLPL 100

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I E G +    P  L+L PTRELAAQVA             +  + GG+    Q + L
Sbjct: 101 --IQELG-SPCEHPGALVLVPTRELAAQVASELSSLRIQKIPRIHTVYGGVSIAEQLRNL 157

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G ++++ T GR++DH  RG L ++ +   ++DEAD ML+MGF+  I++I S      +
Sbjct: 158 EQGGEIIVGTTGRVIDHIERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDAR 217

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  ++  ++  F+ + + +E  TP      IE        + + K   L +L+
Sbjct: 218 VLMFSATMPRQILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVV--RDADKIEALVRLI 275

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D    G++FC  K +   +  SL+++ + V A+HG+I Q  R KIL  F+    +++
Sbjct: 276 DVSDNF-YGLVFCQTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARIL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV N+ +P+ +  Y HR+GRTGRAG  G A + V   + + ++ 
Sbjct: 335 VATDVAARGIDIEGITHVVNYSIPHDSATYTHRVGRTGRAGSQGIAISFVRPHETRRMEY 394

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           + K         NG+L +   PL      +H   +K   I             +SS K+H
Sbjct: 395 LSK-------HCNGELKASTVPL-----VEHILTQKEGRI-------------FSSLKTH 429

Query: 420 IPLKESEKISK---------LQQDIQENDADSLGFRGNMP 450
           +    SE +           LQ+D++   A++LG   ++P
Sbjct: 430 LCQLLSEGVHGTFTRFAQRLLQEDLKARVAEALGTSADVP 469


>gi|262173110|ref|ZP_06040787.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
 gi|261890468|gb|EEY36455.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
          Length = 412

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 132/366 (36%), Positives = 201/366 (54%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A L     +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 1   MSFSSLALSADLIQA-LPKEITQPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    +TL+L PTRELA QV++     G    L    L GG+    Q   L 
Sbjct: 60  ERLKTSPEQ----QTLVLLPTRELAMQVSEVLTHVGTPLGLNTLCLCGGVDKAEQQNALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 116 ENPNILVATTGRLFDLTQSG-LSLNRVTTLVLDEADRLLDMGFWPQVQALASQTASVRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 175 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 233

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK GT Q+++
Sbjct: 234 HQ--WPQVLVFIGAKENADSLTKKLNKAGVVATALHGDKSQAEREAALAEFKNGTTQVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAI 351

Query: 361 EKLIEK 366
             L ++
Sbjct: 352 RTLTQR 357


>gi|147672130|ref|YP_001215089.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O395]
 gi|146314513|gb|ABQ19053.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
 gi|227015635|gb|ACP11844.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
          Length = 428

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 132/374 (35%), Positives = 205/374 (54%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A L     +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 23  MSFSSLALSADLIQA-LPKAITEPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++   + G    L    L GG+    Q   L 
Sbjct: 82  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKTEQQNALA 137

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 138 ENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 197 VMCSATFSDDLKLKTQQLMRVPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK G+ Q+++
Sbjct: 256 HQ--WPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLI 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 314 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAI 373

Query: 361 EKLIEKKVDWLNGD 374
             L ++++   N D
Sbjct: 374 RTLTQRQLPVQNLD 387


>gi|147777235|emb|CAN76636.1| hypothetical protein VITISV_010658 [Vitis vinifera]
          Length = 539

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 127/339 (37%), Positives = 196/339 (57%), Gaps = 6/339 (1%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILEKGRARVRM---PRTL 76
           + +P+PIQ    P +L   D  GIA TG+GKT +F +P M+ +L K +++      P  L
Sbjct: 139 FSQPSPIQSHAWPFLLDHRDFIGIAATGSGKTLAFGVPAMMHVLSKRKSKTSKGVNPLCL 198

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           +L PTRELA Q++D   + GK+  +    L GG     Q   L+ G D++I TPGR+ D 
Sbjct: 199 VLSPTRELAQQISDVLCEAGKHCGVKSVCLYGGTSKGPQISSLKSGVDIVIGTPGRLKDL 258

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
              G   +  +  +V+DEADRMLDMGF P +++I S     RQ ++FSAT    + ++++
Sbjct: 259 IEMGVCCLTEVSFVVLDEADRMLDMGFEPEVRSILSQTCPARQMVMFSATWPLPVHQLAQ 318

Query: 197 NFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI-IFCNQ 254
            F+  NP ++ + +    A       V      S+   LL  L +   + +N + +F   
Sbjct: 319 EFMDPNPVKVVIGSEDLAANHDVMQIVEVLDDRSRDERLLTLLGKYHKSQRNRVLVFVLY 378

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           KK    + + L+++G++V +IHG+  Q++R   LS FK+G+  LM+A+D+AARGLDIPDV
Sbjct: 379 KKEAARVENMLQRRGWNVVSIHGDKAQQARTAALSLFKKGSCPLMIATDVAARGLDIPDV 438

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             V N+  P   E+Y+HRIGRTGRAG+ G A T   +E+
Sbjct: 439 EVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFMQEN 477


>gi|118088913|ref|XP_426195.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 445

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 195/335 (58%), Gaps = 7/335 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK---G 66
           P ++  +   G+ KPTPIQ +  P++LQ  D+ GIAQTGTGKT ++++P    L      
Sbjct: 114 PDIMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQPIP 173

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           + +   P  L+L PTRELA QV     KY      ++ +  GG   +AQ   + +G D++
Sbjct: 174 KDKRGGPGMLVLAPTRELALQVEAECLKYTYKGFKSICIYGGG-DRKAQINVVTKGVDIV 232

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + +I  LV+DEADRMLDMGF P I  I   V   RQT++ SAT
Sbjct: 233 IATPGRLNDLQMNNFINLKSITYLVLDEADRMLDMGFEPQIMKILIDVRPDRQTVMMSAT 292

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
             D ++++++++L+NP  + V T    A  T+E   +    +  K  A ++  + S    
Sbjct: 293 WPDGVRRLAKSYLRNPMIVYVGTLDLAAVNTVEQKVIVINEEEKK--AFMENFIDSMKPK 350

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              IIF  +K    ++   L  QG  V ++HG+ +Q  R + L +FK+G ++++VA+DLA
Sbjct: 351 DKAIIFVGKKSTADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVATDLA 410

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           +RGLD+ D+ HVFNFD P   E Y+HR+GRTGRAG
Sbjct: 411 SRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAG 445


>gi|19309904|emb|CAC84069.1| vasa-like protein [Danio rerio]
          Length = 715

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 147/430 (34%), Positives = 231/430 (53%), Gaps = 31/430 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 276 MTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 335

Query: 61  T-ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
              +  G A  +      P  +I+ PTREL  Q+     K+     +   ++ GGI    
Sbjct: 336 QRFMTDGVAASKFSEMQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGY 395

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +++ +G +VL  TPGR+ D   RGK+ ++ +  LV+DEADRMLDMGF P ++ + +  
Sbjct: 396 TIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEPEMRKLVASP 455

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +++Q+++ +FL+ +   + V         +E   V    QYS
Sbjct: 456 GMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQV-DQYS 514

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL+ LL++    +  ++F   K++   +   L ++  S  +IHG+ +QR R K LS
Sbjct: 515 KRDQLLE-LLRATGNERT-MVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALS 572

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G   ++VA+ +AARGLDI  V HV NFD+P+  + Y+HRIGRTGR G  G+A +  
Sbjct: 573 DFRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFF 632

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             E      +   L    V  L+G    +   LE++  + H            +TGF+ R
Sbjct: 633 NPE------SDTPLARSLVKVLSGAQQVVPKWLEEVAFSAHG-----------TTGFNPR 675

Query: 410 KKNYSSQKSH 419
            K ++S  S 
Sbjct: 676 GKVFASTDSR 685


>gi|88797925|ref|ZP_01113512.1| probable ATP-dependent RNA helicase [Reinekea sp. MED297]
 gi|88779122|gb|EAR10310.1| probable ATP-dependent RNA helicase [Reinekea sp. MED297]
          Length = 448

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 128/363 (35%), Positives = 202/363 (55%), Gaps = 4/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA   L PK+  A+   G+ +PT +Q  +IP  L   D+   A+TG+GKTA+++LP L  
Sbjct: 2   FASFDLHPKLTAAIEQHGWTEPTDVQTASIPQALDGKDLLISAETGSGKTAAYLLPALHR 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +   R      R L++ PTRELA QV  + E   +   L   ++ GG  F+ Q   L R 
Sbjct: 62  VLSERKPKAGIRVLVMVPTRELAQQVMKDCEALTQQTGLKTVIIRGGQEFQYQASLLRRN 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +++I TPGR+ +H N+    + ++E LV+DE DRMLDMGF   +  I   +    QTLL
Sbjct: 122 PEIVIATPGRMTEHLNKNSTDLLDVECLVLDECDRMLDMGFRDEVLAIAGQIRNDHQTLL 181

Query: 183 FSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            SAT+    +  V+++ L + + I++  P    E I    + +    + K  L+  LL S
Sbjct: 182 LSATLKHRGVSSVAKDILNDAEFIQIK-PEMLQENIRQQRIFSDGP-AHKTKLVDWLL-S 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +T +  I+F   +     L ++L      V  +HG I+Q  R +I++ F++G + ++VA
Sbjct: 239 HETFQKAIVFTKTRVQAEELANNLRLHQKRVATLHGEIEQDERNRIMTRFRDGVVDVIVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARGLD+  V  V NFD+    + ++HR+GRTGRAG+ G A +LVA  D   + +IE
Sbjct: 299 TDLAARGLDVEGVDLVVNFDIAQSGDEHVHRVGRTGRAGQSGLAVSLVAAHDYNLMSSIE 358

Query: 362 KLI 364
           + +
Sbjct: 359 RYL 361


>gi|220914235|ref|YP_002489544.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
 gi|219861113|gb|ACL41455.1| DEAD/DEAH box helicase domain protein [Arthrobacter
           chlorophenolicus A6]
          Length = 631

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 130/363 (35%), Positives = 195/363 (53%), Gaps = 13/363 (3%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA LG +PK +   L A G V+P PIQ+KT+P  L   DV G  +TG+GKT +F +P++ 
Sbjct: 4   FAALG-TPKALADTLTAQGIVEPFPIQVKTLPDTLSGRDVLGRGRTGSGKTIAFAIPLVA 62

Query: 62  ILEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L +  A+       P  L+L PTRELA Q+    E   K   L   ++ GGI    Q K
Sbjct: 63  RLAEREAKHFRKPGRPMGLVLAPTRELATQINATIEPLAKAAGLNTTVIYGGISQARQEK 122

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D++I  PGR+ D   +  L +  +EI V+DEAD M D+GF+P ++ +  + P  
Sbjct: 123 ALRAGVDIVIACPGRLEDLIRQRILSLEAVEITVLDEADHMADLGFLPVVKKLMDMTPSQ 182

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q LLFSAT+ + + K+ + +L NP    V+ P +   T+EH  +    Q  KK    Q 
Sbjct: 183 GQRLLFSATLDNGVDKIVQRYLSNPLTHSVDDPQAAVTTMEHHVLVVNDQTVKK----QL 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++        ++F   K +   L  +L   G     +HGN+ Q +R + L+ F  G ++
Sbjct: 239 IVELASGAGRRVLFMRTKHHARKLAKTLTDAGIPAVDLHGNLSQNARDRNLAEFSNGDVR 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE---DI 354
           ++VA+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   TL   E   D+
Sbjct: 299 VLVATDVAARGVHVDDVELVIHVDPPTEHKAYLHRSGRTARAGSDGTVVTLTLPEQQSDV 358

Query: 355 KHI 357
           K +
Sbjct: 359 KKL 361


>gi|255513847|gb|EET90112.1| DEAD/DEAH box helicase domain protein [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 434

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 204/371 (54%), Gaps = 10/371 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+G+S ++   +   G   PT +Q ++IP VL   D+   A+TGTGKT +F+LP++ 
Sbjct: 3   EFEDIGISKRLASGLSAIGITAPTDVQRESIPKVLSGRDIIVRAKTGTGKTYAFLLPIME 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + +GR        LIL PTRELA Q+ ++  K   N  +   +  GG+    Q +K+ R
Sbjct: 63  KISRGRD----IEALILAPTRELAVQIFESGYKLRDN-EIRAVVAYGGVSINMQMQKISR 117

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G ++LI TPGRILD  +RG L +  ++ LV+DEAD MLDMGFI  +++I       RQT+
Sbjct: 118 GCNILIGTPGRILDLISRGVLDLEKVKYLVLDEADIMLDMGFIDDVKDIVRHTGRGRQTM 177

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQLLQ 240
            FSAT+  EL  ++  F++NP+ I V     S   TI H +     +  K  ALL  + +
Sbjct: 178 FFSATIPRELHSLANEFMRNPEFISVGEKEDSIVNTISHTYCEV-GRNEKFSALLAYIDE 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   K  IIF   K     L  +L   G+    +HG + Q  R   L+NFK     ++V
Sbjct: 237 YKP--KKTIIFAETKFGAEILASALRNAGYESLLMHGGLSQNRRENTLNNFKTDA-TMLV 293

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +++ ARG+DI D+  V N+D P+    Y+HR+GR+ R G  G+AF+++  +    I  I
Sbjct: 294 TTNVTARGIDIRDISDVINYDCPDNPRVYLHRVGRSARMGADGRAFSIITHQQRNLISDI 353

Query: 361 EKLIEKKVDWL 371
           E + +  V  L
Sbjct: 354 EYMAKIDVKEL 364


>gi|258405872|ref|YP_003198614.1| DEAD/DEAH box helicase domain-containing protein [Desulfohalobium
           retbaense DSM 5692]
 gi|257798099|gb|ACV69036.1| DEAD/DEAH box helicase domain protein [Desulfohalobium retbaense
           DSM 5692]
          Length = 497

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 128/344 (37%), Positives = 197/344 (57%), Gaps = 7/344 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           LSP++  A   AG+    P+Q ++IP++L+  D+   ++TG+GKT +F+LPML  L   +
Sbjct: 24  LSPRIQEACRSAGWSSLAPVQARSIPVLLRGDDLMVQSRTGSGKTGAFLLPMLERLNPDQ 83

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
           A  +    LIL PTRELA QV    +   K   L  A + GG+ ++ Q   L  GA V++
Sbjct: 84  AACQ---ALILVPTRELARQVHAEAQTLFKGSGLRTAAVFGGVGYKEQFDALREGAHVVV 140

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQTLLFSAT 186
            TPGRILDH  +G      + ILV+DEADRML MGF   +  I   +P +   + LFSAT
Sbjct: 141 GTPGRILDHLLKGSFATKKLRILVMDEADRMLSMGFYQDMVQIRGYLPQSVESSYLFSAT 200

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
               + ++S  FL +P  + +++ +     IEH +    A   ++  L  ++L+  + + 
Sbjct: 201 FPSHVLRLSSQFLIDPGFLSLSSDTLNVAEIEHSYYVVPAVQRERSLL--RILEYLNPV- 257

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + +IFCN K +V  +   L++ G     +  ++ Q  R ++L   K G ++L+VA+D+AA
Sbjct: 258 SALIFCNTKSDVQFVTTVLQRFGLDADQLTSDLRQNKRDQVLGRIKAGNLRLLVATDVAA 317

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           RG+DIPD+ HV  +      E Y+HR GRTGRAG  G+A TLVA
Sbjct: 318 RGIDIPDLSHVIQYQPSEDPELYVHRAGRTGRAGASGEAVTLVA 361


>gi|145323964|ref|NP_001077571.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|332191920|gb|AEE30041.1| DEAD-box ATP-dependent RNA helicase 42 [Arabidopsis thaliana]
          Length = 828

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 131/378 (34%), Positives = 208/378 (55%), Gaps = 9/378 (2%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           GL+ K++  +    Y KP PIQ + +P+++   D  G+A+TG+GKT  FVLPML  + K 
Sbjct: 197 GLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHI-KD 255

Query: 67  RARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
           +  V     P  L++ PTREL  Q+  +  K+ K   +    + GG     Q  +L+RG 
Sbjct: 256 QPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGT 315

Query: 124 DVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           ++++CTPGR++D    + GK+  +  +  LV+DEADRM DMGF P I  I   +   RQT
Sbjct: 316 EIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQT 375

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT   +++ ++   L  P  I+V   S   + I    V    +  +   LL+ L +
Sbjct: 376 VLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRPESDRFLRLLELLGE 434

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  K  ++F   ++    L   + K  +   ++HG  DQ  R   +S+FK     L++
Sbjct: 435 WSEKGKI-LVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLI 493

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+ +AARGLD+ ++  V NFD PN  E+Y+HR+GRTGRAGR G A T ++++D K+   +
Sbjct: 494 ATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDL 553

Query: 361 EKLIEKKVDWLNGDLSSL 378
            K +E     +  DL +L
Sbjct: 554 VKALELSEQPVPDDLKAL 571


>gi|15215678|gb|AAK91384.1| AT3g19760/MMB12_21 [Arabidopsis thaliana]
 gi|25090064|gb|AAN72219.1| At3g19760/MMB12_21 [Arabidopsis thaliana]
          Length = 408

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 202/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+G+   V+  V + G+ KP+ IQ + +  +LQ  DV   AQ+GTGKT+   L +  +
Sbjct: 37  FNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQV 96

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     V+    LIL PTR LA Q     +  G + N+     IGG       +KLE G
Sbjct: 97  VDTSSREVQ---ALILSPTRGLATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHG 153

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++L++DE+D ML  GF   I ++   +P   Q  L
Sbjct: 154 VHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCL 213

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+  P +I V     T E I+  FVA   +   +   C L   L 
Sbjct: 214 VSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL- 272

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   +    F+V ++HG++ Q+ R  I++ F+ G  +++
Sbjct: 273 ----TITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVL 328

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +  
Sbjct: 329 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRD 388

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 389 IEQYYSTQIDEMPMNVADL 407


>gi|164656240|ref|XP_001729248.1| hypothetical protein MGL_3715 [Malassezia globosa CBS 7966]
 gi|159103138|gb|EDP42034.1| hypothetical protein MGL_3715 [Malassezia globosa CBS 7966]
          Length = 885

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 204/374 (54%), Gaps = 16/374 (4%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR--ARVRMPRTLI 77
           GYV PTPIQ + IP ++   D+ G+A+TG+GKT +F+LPM   ++  R       P  L+
Sbjct: 272 GYVAPTPIQSQAIPAIMSGRDMIGVAKTGSGKTMAFLLPMFRHVKDQRPVESGEGPVALV 331

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           + PTRELA Q+  + + + + +NL  A   GG P   Q  ++++  +V++ TPGR++D  
Sbjct: 332 MTPTRELAVQIFRDAQPFLRAFNLRGACAYGGTPISEQIGEMKKLVEVVVATPGRMIDLL 391

Query: 138 --NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
             N G++  M  +  LV+DEADRM D+GF P +  I  L+   RQT+LFSAT    ++ +
Sbjct: 392 TANSGRVTNMQRVTYLVLDEADRMFDLGFEPQVMKILGLIRPDRQTVLFSATFPKPMESL 451

Query: 195 SENFLQN-PKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL--LQSQDTMKNGIIF 251
           +   L++ P  + V   S  A  I    V      SK   LL+ L  L   D     +IF
Sbjct: 452 ARKMLRHEPLEVIVGGRSVVAAEIRQ-IVEVRPDSSKFHRLLEILGQLYHHDEDARTLIF 510

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
            +++     L H L K+G+   ++HG  DQ  R   L++FK G + ++ A+ +AARGLD+
Sbjct: 511 VDRQDAADELMHMLMKRGYPTMSLHGGKDQADRDTTLADFKAGIVPILTATSVAARGLDV 570

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
             +  V N+DVPN  E+Y+HR GRTGRAG  G   T +  E  ++   I       V  L
Sbjct: 571 KQLKLVVNYDVPNHLEDYVHRAGRTGRAGNQGTCVTFITPEQDRYAKDI-------VAAL 623

Query: 372 NGDLSSLNPPLEKI 385
               +++ P LE +
Sbjct: 624 RASKATVPPELEAL 637


>gi|46136501|ref|XP_389942.1| hypothetical protein FG09766.1 [Gibberella zeae PH-1]
 gi|91206536|sp|Q4HZ42|DBP10_GIBZE RecName: Full=ATP-dependent RNA helicase DBP10
          Length = 897

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 132/397 (33%), Positives = 214/397 (53%), Gaps = 33/397 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ K IPL+L R D+ G+A+TG+GKTA+FV+PM+  
Sbjct: 84  FQAMGLNNNLLKAITRKGFSVPTPIQRKAIPLILDRKDLVGMARTGSGKTAAFVIPMIEK 143

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L    AR    R LI+ P+RELA Q     +++ +  +L   LL+GG   E Q   +   
Sbjct: 144 LRAHSARFGT-RALIMSPSRELAIQTLKVVKEFSRGTDLKCVLLVGGDSLEEQFGYMAAN 202

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P +RQ+LL
Sbjct: 203 PDIVIATPGRFLHLKVEMSLDLSSIKYVVFDEADRLFEMGFAAQLTEILHALPPSRQSLL 262

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL--- 239
           FSAT+   L + +   LQ+P  + ++     +  +E  F A      K+ +LL  L    
Sbjct: 263 FSATLPASLVEFARAGLQDPSLVRLDAEQKVSPDLESAFFAVKGA-EKEGSLLHILHDVI 321

Query: 240 ----------------------------QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
                                         + T  + IIF   K +V  L + L   GF+
Sbjct: 322 KMPVGSPEGVNNDSEKGSKKRKRGADGGSGKPTEHSTIIFTATKHHVEYLANLLIYAGFA 381

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
           V  ++G++DQ +R   + +F+ G   ++V +D+AARG+DIP + +V NFD P + + ++H
Sbjct: 382 VSYVYGSLDQTARRIQVEDFRMGKTNILVVTDVAARGIDIPVLANVINFDFPPQPKVFVH 441

Query: 332 RIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           R+GRT RAG+ G +++LV   D  ++  ++  + KK+
Sbjct: 442 RVGRTARAGQRGWSYSLVRDTDAPYLIDLQLFLGKKL 478


>gi|328778605|ref|XP_001122266.2| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Apis
           mellifera]
          Length = 739

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 139/395 (35%), Positives = 214/395 (54%), Gaps = 12/395 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + LS  ++ A+    +V PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP L  
Sbjct: 158 FHQMNLSRPLLKAITAMNFVHPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPTLER 217

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +      + R L+L PTREL  QV    ++  +   + V L +GG+  +AQ   L R
Sbjct: 218 LLYRPLDGPAISRVLVLVPTRELGVQVYQVTKQLSQFTTIEVGLSVGGLDVKAQEAVLRR 277

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I      +RQT
Sbjct: 278 NPDIVIATPGRLIDHLKNTPTFSLDSIEVLILDEADRMLDEYFAEQMKYIVKQCSRSRQT 337

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+E++ ++   L  P ++ +++    A  +   F+    +       +   L 
Sbjct: 338 ILFSATMTEEVKDLAAVSLNKPVKVFIDSNQDVAFNLRQEFIRIRKEREGDREAILAALI 397

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F   KK    L   L   G  V  +HGN+ Q  R++ L+ FK   I +++
Sbjct: 398 CRTFHDHVMVFVQTKKQAHRLHILLGLLGIKVGELHGNLTQPQRLENLTKFKNEEIDILL 457

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V NF +P   ++YIHR+GRT RAGR G + +L  +++   +  I
Sbjct: 458 ATDVAARGLDISGVKTVINFVMPATMQHYIHRVGRTARAGRVGVSVSLAGEQERSLVKEI 517

Query: 361 EKLIEKKV----------DWLNGDLSSLNPPLEKI 385
            K  +  V          D     L SL P +EKI
Sbjct: 518 IKNAKNPVKNRIIPSDIIDKYYKKLQSLEPDVEKI 552


>gi|307203840|gb|EFN82776.1| ATP-dependent RNA helicase abstrakt [Harpegnathos saltator]
          Length = 624

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 204/374 (54%), Gaps = 24/374 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G +KPTPIQ++ IP VL   D+ GIA TG+GKT  FVLP++  
Sbjct: 185 FKEMKFHRGILYGLEQKGIIKPTPIQVQGIPTVLSGRDMIGIASTGSGKTLVFVLPIIEF 244

Query: 63  -----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY------NLTVALLIGGIP 111
                L+    +   P  LI+ P+RELA Q  D    Y  +        +   L IGG+P
Sbjct: 245 CLEQELDMPFIKKEGPYGLIICPSRELAKQTYDIIRHYTNSLRQADCPEIRSCLAIGGVP 304

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
                  + +G  +++ TPGR++D  ++  + ++    L +DEADRM+DMGF   ++ I 
Sbjct: 305 VSESLVIINKGVHIMVATPGRLMDMLHKKMVTLSVCRYLCMDEADRMIDMGFEEDVRTIF 364

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM   +Q  + + L  P  + +N   + A ++    V    +Y K+
Sbjct: 365 SFFRGQRQTLLFSATMPKRIQNFARSALVKP--VTINVGRAGAASMN---VIQEVEYVKQ 419

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K++V  +   L  +G    AIHG IDQ  R + +  
Sbjct: 420 EAKIVYLLECLQKTAPPVLIFAEKKRDVDAIHEYLLIKGVEAVAIHGGIDQEERSRSVEA 479

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+D+A++GLD  DV HV N+D+P+  ENY+HRIGRTGR+GR G A T + 
Sbjct: 480 FRGGRKDVLVATDVASKGLDFADVQHVINYDMPDDVENYVHRIGRTGRSGRTGIATTFIN 539

Query: 351 KE-------DIKHI 357
           K        D+KH+
Sbjct: 540 KANDESVLLDLKHL 553


>gi|222617918|gb|EEE54050.1| hypothetical protein OsJ_00740 [Oryza sativa Japonica Group]
          Length = 468

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 132/392 (33%), Positives = 208/392 (53%), Gaps = 46/392 (11%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+G    V+  +  AG+V+PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP + 
Sbjct: 92  EFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIV 151

Query: 62  ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                 IL  G      P  L+L PTRELA Q+     K+G                   
Sbjct: 152 HVNAQPILAPGDG----PIVLVLAPTRELAVQIQQEATKFG------------------- 188

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
                   +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S + 
Sbjct: 189 -------VEIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIR 241

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQ-YSKKC 232
             RQTL +SAT   E+++++ NFL +P ++ + +    A     +H  + + +Q Y+K  
Sbjct: 242 PDRQTLYWSATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILSESQKYNKLV 301

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL+ ++     +    IF + KK    +   L   G+   +IHG+  Q  R  +LS FK
Sbjct: 302 NLLEDIMDGSRIL----IFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFK 357

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +M A+D+AARGLD+ DV +V N+D P   E+Y+HRIGRTGRAG  G A+T     
Sbjct: 358 SGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 417

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLN---PP 381
           + +    +  ++E+    ++ +L+++    PP
Sbjct: 418 NARFAKDLINILEEAGQKVSPELANMGRGAPP 449


>gi|255721753|ref|XP_002545811.1| hypothetical protein CTRG_00592 [Candida tropicalis MYA-3404]
 gi|240136300|gb|EER35853.1| hypothetical protein CTRG_00592 [Candida tropicalis MYA-3404]
          Length = 440

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 141/388 (36%), Positives = 224/388 (57%), Gaps = 26/388 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYV-KPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M F +LG++ K +   LDA  + KPT IQ   IP +L+ HD  G A+TG+GKT +F  PM
Sbjct: 1   MSFNELGVA-KWLSEALDAMKIYKPTSIQSACIPQILKGHDCIGGAKTGSGKTIAFAAPM 59

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           LT   +    V     L+L PTRELA Q+A+ F   G N N+ V++++GG     Q  +L
Sbjct: 60  LTQWSEDPYGVF---GLVLTPTRELALQIAEQFTALGSNMNIKVSVIVGGEDIVKQALEL 116

Query: 120 ERGADVLICTPGRILDH-FNRGKLLMNN---IEILVIDEADRMLDMGFIPYIQNITSLVP 175
           ++    +I TPGR+ DH  N G+  ++    ++ LV+DEADR+L   F   ++    ++P
Sbjct: 117 QKKPHFVIATPGRLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLKRCFDVLP 176

Query: 176 FT--RQTLLFSATMTDELQKVSEN---------FLQNPKRIE-VNTPSSTAETIEHCFVA 223
            +  RQTLLF+AT+TD ++ + E          F+   + ++ V  PS+   +I + FV 
Sbjct: 177 PSEKRQTLLFTATITDAVRALKEKPQTEGKPPVFMHEVETVDKVAIPSTL--SISYVFVP 234

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
           +Y + +   ++L  L + +D     ++F N+      L  +L K  F V ++H  + Q  
Sbjct: 235 SYVKEAYLNSILN-LEKFKDA--TAVVFVNRTITAEVLRRTLRKLDFRVASLHSEMPQAE 291

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L  FK G  ++++A+D+A+RGLDIP V  V NFD+P   +++IHR+GRT RAGR G
Sbjct: 292 RTNSLHRFKAGAARILIATDVASRGLDIPTVELVVNFDIPADPDDFIHRVGRTARAGRKG 351

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
            A +++ ++DI  I +IE+ I KK++ L
Sbjct: 352 DAVSIIGEKDIDRIQSIEERINKKMELL 379


>gi|189025995|ref|YP_001933767.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum
           SS14]
 gi|189018570|gb|ACD71188.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum
           SS14]
          Length = 649

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 149/460 (32%), Positives = 241/460 (52%), Gaps = 41/460 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59
           + F +LGL+ + + AV   G+  PTPIQ   IP +L    ++   A+TGTGKTA+F LP+
Sbjct: 46  VSFEELGLNEQSLAAVRLKGFRCPTPIQAAAIPRLLAGDANIIAKARTGTGKTAAFGLPL 105

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I E G +    P  L+L PTRELAAQVA             +  + GG+    Q + L
Sbjct: 106 --IQELG-SPCEHPGALVLVPTRELAAQVASELSSLRIQKIPRIHTVYGGVSIAEQLRNL 162

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G ++++ T GR++DH  RG L ++ +   ++DEAD ML+MGF+  I++I S      +
Sbjct: 163 EQGGEIIVGTTGRVIDHIERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDAR 222

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  ++  ++  F+ + + +E  TP      IE        + + K   L +L+
Sbjct: 223 VLMFSATMPRQILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVV--RDADKIEALVRLI 280

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D    G++FC  K +   +  SL+++ + V A+HG+I Q  R KIL  F+    +++
Sbjct: 281 DVSDNF-YGLVFCQTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARIL 339

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV N+ +P+ +  Y HR+GRTGRAG  G A + V   + + ++ 
Sbjct: 340 VATDVAARGIDIEGITHVVNYSIPHDSATYTHRVGRTGRAGSQGIAISFVRPHETRRMEY 399

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           + K         NG+L +   PL      +H   +K   I             +SS K+H
Sbjct: 400 LSK-------HCNGELKASTVPL-----VEHILTQKEGRI-------------FSSLKTH 434

Query: 420 IPLKESEKISK---------LQQDIQENDADSLGFRGNMP 450
           +    SE +           LQ+D++   A++LG   ++P
Sbjct: 435 LCQLLSEGVHGTFTRFAQRLLQEDLKARVAEALGTSADVP 474


>gi|254507577|ref|ZP_05119710.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           16]
 gi|219549464|gb|EED26456.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           16]
          Length = 377

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 116/286 (40%), Positives = 180/286 (62%), Gaps = 9/286 (3%)

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
           ++ GG+    Q  KL +G DVL+ TPGR+LD + +  +  + +E+LV+DEADRMLDMGFI
Sbjct: 1   MVFGGVKINPQMMKLRKGTDVLVATPGRLLDLYQQKAIKFDQLEVLVLDEADRMLDMGFI 60

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
             I+ I +L+P  RQ LLFSAT + E++++++  + +P  + V+  +STA TIE      
Sbjct: 61  RDIRKILALLPAKRQNLLFSATFSAEIRELAKGLVNDPIEVSVSKENSTAVTIEQSIYP- 119

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
            A   KK  +L ++++  D  K  ++FC  K     L   L K+G +   IHGN  Q +R
Sbjct: 120 -ADKRKKAPMLVKMIKDGD-WKQTLVFCRTKHGANRLAFFLNKEGITAAPIHGNKSQGAR 177

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + L++FK G ++++VA+D+AARG+DIP +  V NF++PN +E+Y+HRIGRTGRAG  GK
Sbjct: 178 TRALADFKSGEVKVLVATDIAARGIDIPQLPQVVNFELPNVSEDYVHRIGRTGRAGEVGK 237

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNP----PLEKID 386
           A++LV   +   +  IE+LI++ +  L  +L    P    P  K+D
Sbjct: 238 AYSLVEAAEASELFGIERLIQQVLPRL--ELEGFKPTNELPESKLD 281


>gi|60501853|gb|AAX22126.1| vasa [Carassius auratus]
          Length = 688

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 148/427 (34%), Positives = 233/427 (54%), Gaps = 33/427 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 251 MTFDEAGLCESLRKNVTKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 310

Query: 61  T-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G A      V+ P  +I+ PTREL  Q+     K+     +   ++ GGI    
Sbjct: 311 QRLMADGVAASKFSEVQEPEAIIVAPTRELINQIYLEAGKFAYGTCVRPVVVYGGINTGY 370

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +++ +G ++L  TPGR+LD   RGK+ ++ +  LV+DEADRMLDMGF P ++ +    
Sbjct: 371 TIREVLKGCNILCGTPGRLLDIIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRKLVGSP 430

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +++Q+++ +FL+ +   + V         +E   +    QYS
Sbjct: 431 GMPSKEDRQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIIQV-DQYS 489

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL  LL+S  T +  ++F   K++   +   L ++  S  +IHG+ +QR R K LS
Sbjct: 490 KRDQLLD-LLRSTGTERT-MVFVETKRSADFIATFLCQEKLSTTSIHGDREQREREKALS 547

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G   ++VA+ +AARGLDI  V HV NFD+P+  + Y+HRIGRTGR G   +A +  
Sbjct: 548 DFRTGQCPVLVATSVAARGLDIEQVQHVVNFDLPSSIDEYVHRIGRTGRCGNIRRAVSFF 607

Query: 350 AKE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
             E D     ++ K+       L+G    +   LE+I  + H            +TGF+ 
Sbjct: 608 NPESDTPLARSLAKV-------LSGAQQEVPKWLEEIAFSAHG-----------TTGFNP 649

Query: 409 RKKNYSS 415
           R K ++S
Sbjct: 650 RGKVFAS 656


>gi|325189223|emb|CCA23746.1| DEAD box helicase putative [Albugo laibachii Nc14]
          Length = 809

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 140/408 (34%), Positives = 220/408 (53%), Gaps = 58/408 (14%)

Query: 2   DFADLGLSPKVVC-AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++ +  L P+ +  A+ +  + +P+PIQ++ IP+ L + D+ GIA+TG+GKTA+F++P++
Sbjct: 350 NWKEASLLPEALFKAIQEMRFERPSPIQMQAIPIGLAKRDIIGIAETGSGKTAAFLIPII 409

Query: 61  TILEK------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA---------L 105
             L         R   + P  LI+ PTRELA Q+     K  K+  + V           
Sbjct: 410 AYLYHLPAVMLERTGEQGPLALIMAPTRELALQIEQEAIKLCKHTQVGVVGSQNRIRTLS 469

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           ++GG   E Q  KL +G D++I TPGR++D      L++N    +V+DEADRM+DMGF P
Sbjct: 470 VVGGQSIEDQAFKLRQGVDIIIGTPGRLMDCMESHYLVLNQCNYVVLDEADRMIDMGFEP 529

Query: 166 YI----QNITSLVPFT--------------------RQTLLFSATMTDELQKVSENFLQN 201
            +     N+ SL+                       R T++FSATM  E++++++ +L++
Sbjct: 530 QVVAVLDNMGSLLKSENEEEMEKQLERANNAQEFRYRVTMMFSATMPTEVERLAKTYLRH 589

Query: 202 PKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS------------QDTMKNG 248
           P  I++ +  S   + IE   V  +    KK   LQ LL              ++ + +G
Sbjct: 590 PAIIKIGDEDSGKNKRIEQRVV--FLNSGKKKLRLQHLLHETLSSSGQVRISRKEKVVDG 647

Query: 249 ---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              ++F N KK    L   L ++GF    +HG   Q  R + L  F+EG   ++VA+D+A
Sbjct: 648 QKVMVFVNIKKECDVLGKYLAQEGFRTTILHGGKSQEQREESLRGFREGFCDVLVATDVA 707

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            RGLDIPDV HV N+D+P++ ENY HRIGRTGRAG+ G A + +  ED
Sbjct: 708 GRGLDIPDVTHVVNYDLPSKIENYCHRIGRTGRAGKEGVAISFLTNED 755


>gi|149235261|ref|XP_001523509.1| ATP-dependent rRNA helicase RRP3 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152060561|sp|A5E6W6|RRP3_LODEL RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|146452918|gb|EDK47174.1| ATP-dependent rRNA helicase RRP3 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 504

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 206/368 (55%), Gaps = 11/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L P+++ ++    Y +PTPIQ   IP  LQ  D+ GIA+TG+GKTA+F +P+L  
Sbjct: 100 FTEFDLVPELLESIQSLKYTQPTPIQAAAIPHALQGKDIVGIAETGSGKTAAFAIPILQT 159

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L       +    L+L PTRELA Q+ + F+  G +  L    +IGG+    Q + L R 
Sbjct: 160 LYTA---AQPYYALVLAPTRELAFQIKETFDALGSSMGLRSVCIIGGMSMMEQARDLMRK 216

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQT 180
             V+I TPGR++DH    K   +  ++ LV+DE DRM+D+ +   I  I   +P   R T
Sbjct: 217 PHVIIATPGRLIDHLEHTKGFSLKKLQYLVMDEVDRMIDLDYAKAIDQILKQIPSHQRIT 276

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            L++ATM+ E++K   + L +P ++E+       + ++     T +  +K   L+Q  + 
Sbjct: 277 YLYTATMSREIEKFKRS-LNSPVQVEIVKLEKVPDKLKQTMCLT-SPNTKDTRLIQ--IV 332

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D+MK  IIF     +    C  L   GF    +HG + Q  R+  ++ FK GT  ++V
Sbjct: 333 NLDSMKRVIIFTRTVVHTRRCCLMLLNLGFKCVELHGQMPQSRRLGAINKFKAGT-PILV 391

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V N+D+P+    YIHR+GRT RAG+ GKA +LV + D++    I
Sbjct: 392 ATDVAARGLDIPAVDLVINYDIPD-PTLYIHRVGRTARAGKAGKAISLVTQYDLESYLRI 450

Query: 361 EKLIEKKV 368
           E  +  K+
Sbjct: 451 ENTLGTKL 458


>gi|225463253|ref|XP_002274688.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 549

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 127/339 (37%), Positives = 196/339 (57%), Gaps = 6/339 (1%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILEKGRARVRM---PRTL 76
           + +P+PIQ    P +L   D  GIA TG+GKT +F +P M+ +L K +++      P  L
Sbjct: 149 FSQPSPIQSHAWPFLLDHRDFIGIAATGSGKTLAFGVPAMMHVLSKRKSKTSKGVNPLCL 208

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           +L PTRELA Q++D   + GK+  +    L GG     Q   L+ G D++I TPGR+ D 
Sbjct: 209 VLSPTRELAQQISDVLCEAGKHCGVKSVCLYGGTSKGPQISSLKSGVDIVIGTPGRLKDL 268

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
              G   +  +  +V+DEADRMLDMGF P +++I S     RQ ++FSAT    + ++++
Sbjct: 269 IEMGVCCLTEVSFVVLDEADRMLDMGFEPEVRSILSQTCPARQMVMFSATWPLPVHQLAQ 328

Query: 197 NFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI-IFCNQ 254
            F+  NP ++ + +    A       V      S+   LL  L +   + +N + +F   
Sbjct: 329 EFMDPNPVKVVIGSEDLAANHDVMQIVEVLDDRSRDERLLTLLGKYHKSQRNRVLVFVLY 388

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           KK    + + L+++G++V +IHG+  Q++R   LS FK+G+  LM+A+D+AARGLDIPDV
Sbjct: 389 KKEAARVENMLQRRGWNVVSIHGDKAQQARTAALSLFKKGSCPLMIATDVAARGLDIPDV 448

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             V N+  P   E+Y+HRIGRTGRAG+ G A T   +E+
Sbjct: 449 EVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFMQEN 487


>gi|145547669|ref|XP_001459516.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124427341|emb|CAK92119.1| unnamed protein product [Paramecium tetraurelia]
          Length = 957

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 136/381 (35%), Positives = 216/381 (56%), Gaps = 30/381 (7%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR--MPRTLIL 78
           + +PT IQ + IP+VL   +   IAQTG+GKT +++LP L  LE+    +    P+ LIL
Sbjct: 79  FQQPTAIQSEVIPIVLSGRNALAIAQTGSGKTLAYLLPALVHLEQHAMIMESPQPKLLIL 138

Query: 79  EPTRELAAQVADNF----EKYGKN------------YNLTVALLIGGIPFEAQNKKL-ER 121
            PTREL  Q+ D      E Y  N             NL +  + GG P + Q  +L ++
Sbjct: 139 VPTRELGVQIYDQLLQLIEFYYGNKKQNEKENSPNLTNLKIVCIYGGNPNKKQQVELIQK 198

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+++  + G + +N I +L++DEADRMLDMGF P +++I S +   RQT+
Sbjct: 199 GIHVIVATPGRLIELIDEGMVNLNKITMLILDEADRMLDMGFEPQVRDIVSTIREDRQTI 258

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT  +E+Q++S+ F  +P  +++   +   + I    + T  +  +K  +L  +L  
Sbjct: 259 LLSATWPNEVQQLSKEFCYDPILVKIGKGAPITQKI----ICTGQK--EKLHVLMNVLDD 312

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  +IF   KK   +L  SL KQG+   ++HG+  Q  R  I+  FK+   +L+ A
Sbjct: 313 LIYTDKVLIFAETKKRCEDLSQSLTKQGYFCISLHGDKSQDQRDAIMKQFKDSNTRLICA 372

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLD+ D+  V N+D P   ++YIHRIGRTGRAG HG++F+L++ E  + I    
Sbjct: 373 TDIASRGLDVKDITVVVNYDFPKSFDDYIHRIGRTGRAGAHGRSFSLLSYEKDEGI---- 428

Query: 362 KLIEKKVDWLNGDLSSLNPPL 382
            L ++ + +LN     +N  L
Sbjct: 429 -LADQVITYLNSCNQEVNQEL 448


>gi|195614644|gb|ACG29152.1| ATP-dependent RNA helicase DDX41 [Zea mays]
          Length = 618

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 143/405 (35%), Positives = 222/405 (54%), Gaps = 30/405 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF DL L   ++  + + G V+PTPIQ++ +P+VL   D+ GIA T +GKT  FVLP++ 
Sbjct: 174 DFRDLRLPEPMLRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTRSGKTLVFVLPLIM 233

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
           +  +  + + +     P  +I+ P+RELA Q  D  E++           +   L IGG+
Sbjct: 234 VALQEESLMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLIPLKEAGYPEIRHLLCIGGV 293

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q   L++G  +++ TPGR+ D   + K+ ++N   L +DEADR++D+GF   I+ +
Sbjct: 294 DMRTQLDVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIKEV 353

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q  ++N L  P  + VN   + A  ++   V    +Y K
Sbjct: 354 FDHFKDQRQTLLFSATMPQKIQNFAKNALVKP--VTVNVGRAGAANLD---VIQEVEYVK 408

Query: 231 KCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A +  LL+  Q T    +IFC  K +V  +   L  +G    AIHG  DQ  R   + 
Sbjct: 409 EDARIIYLLECLQKTPPPVLIFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERQNAID 468

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T +
Sbjct: 469 SFKTGRKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 528

Query: 350 AKE-------DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
            K        D+KH      L+++    +   L+ LN PL+  +I
Sbjct: 529 NKNQTETTLLDLKH------LLKEAKQRIPPVLAELNGPLDDEEI 567


>gi|255712573|ref|XP_002552569.1| KLTH0C07964p [Lachancea thermotolerans]
 gi|238933948|emb|CAR22131.1| KLTH0C07964p [Lachancea thermotolerans]
          Length = 398

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 126/382 (32%), Positives = 216/382 (56%), Gaps = 13/382 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  V   G+  P+ IQ + I  ++   DV   AQ+GTGKTA+F + ML +
Sbjct: 25  FESMHLKEDLLRGVYAYGFEAPSAIQSRAITQIISGRDVIAQAQSGTGKTATFTIGMLQV 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    + R  ++L+L PTRELA Q++      G   N++     GG   +   KKL  G
Sbjct: 85  ID---FKSRELQSLVLSPTRELAKQISQVVGNLGDYMNISAHACTGGKAMQTDTKKLTHG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD--MGFIPYIQNITSLVPFTRQT 180
             V+  TPGR+LD   R  L   ++++L++DEAD +L   +GF   I +I + +P + Q 
Sbjct: 142 CHVVSGTPGRVLDMIKRRILNTRHLKMLILDEADELLSETLGFKQQIYDIFAKLPKSVQV 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT---YAQYSKKCALLQQ 237
           ++ SATM+ ++ ++++ F+ +P +I V     + E I+   V       ++   C L   
Sbjct: 202 VVVSATMSKDILEITKKFMSDPVKILVKRDEISLEGIKQYHVNVDREEWKFDTLCDLYDS 261

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L     T+   +IFCN KK V  L   L +  F+V ++HG++ Q  R +++++F+ GT +
Sbjct: 262 L-----TITQCVIFCNTKKVVDWLSSKLLQANFAVASMHGDMKQEDRDRVMNDFRSGTSR 316

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++++D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   + ++D + +
Sbjct: 317 VLISTDVWARGIDVQQVSLVINYDLPDNLENYIHRIGRSGRFGRKGVAINFITRDDAQGL 376

Query: 358 DAIEKLIEKKVDWLNGDLSSLN 379
            AIEK    K+  +  +L+ L+
Sbjct: 377 KAIEKHYSVKIRPMPANLAELS 398


>gi|332307071|ref|YP_004434922.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174400|gb|AEE23654.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 446

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 128/373 (34%), Positives = 211/373 (56%), Gaps = 5/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DL L  ++  A+   G+ + T IQ + IP  L   D+   ++TG+GKT +F+LP +
Sbjct: 1   MQFSDLPLDHRLGKALEIKGFTQATEIQAQAIPYALMGKDLIASSKTGSGKTLAFLLPAV 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L K     + PR LIL PTRELA QV    +     + L  AL++GG  F  Q K L
Sbjct: 61  QRVLTKQPLSRKDPRVLILAPTRELAKQVFFQLKWLIAKHQLKAALILGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TR 178
                 ++ T GRI DH +   L +N +E+L++DEADRMLD+GF   ++ I +      R
Sbjct: 121 RHYPQFVVGTAGRIADHLSGKSLYLNGLEMLIMDEADRMLDLGFSEQLKQINAAADHRKR 180

Query: 179 QTLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           Q+++FSAT+ +  L  ++++ L+ P+RI +   S+  + I+  F       + K  +L  
Sbjct: 181 QSMMFSATLDNAALHHLTQSMLKAPQRISIGISSAEHKDIQQRFFLA-DNVTHKERMLAH 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  +D  +  I+F   + +   L   L++QG    A+ GN+ Q  R  I+S F  G   
Sbjct: 240 IINEKD-HRQVIVFTATRADTERLSSLLKEQGLYSIALSGNLSQGQRNNIMSEFGRGQQH 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLD+ +V  V NFD+P  A+ Y+HR+GRTGRAG  G+A + V  +D    
Sbjct: 299 ILVTTDIASRGLDLLNVSLVVNFDLPKLADEYVHRVGRTGRAGNKGEAVSFVGPKDWASY 358

Query: 358 DAIEKLIEKKVDW 370
            +I+  +++++ +
Sbjct: 359 LSIKSFLQQEISF 371


>gi|296117857|ref|ZP_06836440.1| putative ATP-dependent RNA helicase [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969088|gb|EFG82330.1| putative ATP-dependent RNA helicase [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 450

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 131/381 (34%), Positives = 200/381 (52%), Gaps = 9/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   +V  +   G   P PIQ   IP  L   D+ G   TG+GKT +F LPM+  
Sbjct: 4   FADLGLPRPIVSVLAQQGITSPFPIQEAAIPDALAGKDILGRGPTGSGKTFTFGLPMIAR 63

Query: 63  LE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   G ++   PR L+L PTRELA Q+    ++      L V  ++GG+      ++L R
Sbjct: 64  LAGSGASKPGRPRGLVLAPTRELAIQIQQRLDEPANAMGLRVLSVVGGVNINNHIRQLAR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+L+ TPGR  D  N+ KL +++  +  +DEAD+M DMGF+P ++ + +L P   Q L
Sbjct: 124 PVDILVATPGRAQDLVNQKKLSLSDATLTALDEADQMADMGFLPQVKKLLALTPDNAQRL 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ K+   F+ +P         ++ +T++H       +  +   +L+   + 
Sbjct: 184 LFSATLDGDVNKLVSRFMHDPVTHSTAPVQASVDTMKHYVFFVGEREDRNKVVLRIAARE 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I+F   K  V      L + G     +HG+  Q +R   L  F +G++ ++VA
Sbjct: 244 GKT----IMFMRTKHGVDRQAKKLRRAGIPAMGLHGDKGQNTRSTTLQGFADGSVSVLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  V + D P   + Y+HR GRT RAG  G   TLV  E     D + 
Sbjct: 300 TDIAARGIDVHDVSLVVHVDPPAEHKAYLHRAGRTARAGEAGSVVTLVMNE---QRDEVA 356

Query: 362 KLIEKK-VDWLNGDLSSLNPP 381
           KLI+K  VD    D+S+ + P
Sbjct: 357 KLIDKAGVDAETIDISTDSSP 377


>gi|289740253|gb|ADD18874.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
          Length = 692

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 127/360 (35%), Positives = 205/360 (56%), Gaps = 5/360 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG--- 66
           P ++  V   G+  P+PIQ +  P++L+  D+ GIAQTGTGKT +F+LP L  +E     
Sbjct: 285 PDLLDEVTKQGFQTPSPIQSQAWPILLKGEDMIGIAQTGTGKTLAFLLPALIHIEYQSIP 344

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R++   P  LIL PTRELA Q+     KY     +    + GG     Q + + RG +V+
Sbjct: 345 RSQRGGPNVLILAPTRELALQIEKEVNKYSFR-GIKAVCIYGGGNRNDQIQNVGRGVEVI 403

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           ICTPGR+ D      + +  +  LV+DEADRMLDMGF P I+ +   +   RQT++ SAT
Sbjct: 404 ICTPGRLNDLVQANVIDVTTVTYLVLDEADRMLDMGFEPQIRKVLLDIRPDRQTIMTSAT 463

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
               +++++++++ NP ++ V +    A T     V    +   K  ++++ +++     
Sbjct: 464 WPPGVRRLAQSYMSNPIQVCVGS-LDLAATHSVRQVVEVVEEDDKFYMIKKFIKNMQPDD 522

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+FC +K    +L   L   GF   AIHG+ DQ  R + +++   G +++++A+D+A+
Sbjct: 523 KLIVFCGKKVRADDLSSDLTLDGFLCQAIHGSRDQADREQAIADITSGDVRILIATDVAS 582

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI D+ HV NFD P   E Y+HR+GRTGRAGR G + + + + D      + K++E+
Sbjct: 583 RGLDIDDITHVINFDFPRNIEEYVHRVGRTGRAGRTGTSISYLTRSDWAMAPELIKIMEE 642


>gi|156057349|ref|XP_001594598.1| hypothetical protein SS1G_04405 [Sclerotinia sclerotiorum 1980]
 gi|160419160|sp|A7EGG4|PRP28_SCLS1 RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|154702191|gb|EDO01930.1| hypothetical protein SS1G_04405 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 816

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 130/416 (31%), Positives = 217/416 (52%), Gaps = 38/416 (9%)

Query: 10  PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK--- 65
           PK +  V++  GY +P+ +Q   IP+ LQ  D+ G+A TG+GKTA+F+LP+L  + +   
Sbjct: 387 PKRLLDVINQVGYDEPSAVQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISELPP 446

Query: 66  --GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
                +   P  +IL PTRELA Q+    +K+      T   ++GG   E Q+  L  GA
Sbjct: 447 LNEFTKNDGPYAIILAPTRELAQQIEVEAKKFATPLGFTCVSIVGGHSLEEQSYNLRNGA 506

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT------ 177
           +++I TPGR++D   R  L++     +++DEADRM+D+GF   +  I   +P +      
Sbjct: 507 EIIIATPGRLVDCIERRVLVLGQCCYIIMDEADRMIDLGFEESVNKILDALPVSNEKPDT 566

Query: 178 -------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
                              RQT++++ATM   ++K+++ +L+ P  + +       ET+E
Sbjct: 567 DDAEDAQAMSRHLGGKDRYRQTMMYTATMPPAVEKIAKKYLRRPAIVTIGNIGEAVETVE 626

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
              V   A   K+   L ++L S +     I+F N K+N   +   ++  GF+   +HG+
Sbjct: 627 Q-RVEFVAGEDKRKKRLNEILASGEFQPPIIVFVNIKRNCDAVARDIKHMGFTSVTLHGS 685

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
             Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y HRIGRTGR
Sbjct: 686 KTQEQREAALASVRSGATNVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGR 745

Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           AG+ G A T +  ED   +  +++++      +   +S +   L K + AQ    R
Sbjct: 746 AGKSGVAITFLGNEDADTMYDLKQML------MKSSISRVPEELRKHEAAQQKSQR 795


>gi|255088653|ref|XP_002506249.1| predicted protein [Micromonas sp. RCC299]
 gi|226521520|gb|ACO67507.1| predicted protein [Micromonas sp. RCC299]
          Length = 1063

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 128/371 (34%), Positives = 208/371 (56%), Gaps = 8/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A  GLS +V+  +  +G+ KP PIQ + +P+++   D  G+A+TG+GKT S+VLPML  
Sbjct: 398 WAQAGLSNRVMELIRRSGFDKPMPIQCQALPVIMSGRDCIGVAKTGSGKTLSYVLPMLRH 457

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++  R       P  +I+ PTREL  Q+  + +K+G+   L    + GG     Q  +L+
Sbjct: 458 VKDQRPIESGDGPIGMIMGPTRELVTQIGKDCKKFGRAAGLVAVSVYGGSGVATQIGELK 517

Query: 121 RGADVLICTPGRILDHFNRGKLLMNN---IEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RG +++ CTPGR++D    G   + N   +  +V+DEADRM DMGF P I  I + +   
Sbjct: 518 RGCEIVACTPGRMIDVLTTGAGRITNLRRVTYMVLDEADRMFDMGFEPQITRIMNNLRPD 577

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSAT    ++ ++ + L NP  I+V   S     IE   V   A+  +   +L+ 
Sbjct: 578 RQTVMFSATFPHAMEALARSALTNPVEIQVGGRSVVNSDIEQ-IVEMRAEEDRFLRVLEL 636

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L +  +  K  IIF   +     +   L + G+   ++HG  +Q  R   +++FK     
Sbjct: 637 LGEWYERGKI-IIFVASQDKCDQVFRDLLRSGYPCLSLHGGKEQSDRECTIADFKSDVCN 695

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+ +AARGLD+  +  V N+D PN  E+Y+HR+GRTGRAG  G A T +++E+ K  
Sbjct: 696 ILVATSVAARGLDVSGLRLVVNYDTPNHLEDYVHRVGRTGRAGNKGTAVTFISQEEEKFA 755

Query: 358 -DAIEKLIEKK 367
            D ++ + + K
Sbjct: 756 PDLVKAMTDAK 766


>gi|254224718|ref|ZP_04918334.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae V51]
 gi|125622781|gb|EAZ51099.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae V51]
          Length = 428

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 202/368 (54%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A L     +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 23  MSFSSLALSADLIQA-LPKAITQPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++     G    L    L GG+    Q   L 
Sbjct: 82  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALA 137

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 138 ENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 197 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N  +L   L K G     +HG+  Q  R   L+ FK GT Q+++
Sbjct: 256 HQ--WPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQAQRETALAEFKNGTTQVLI 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+HG A +LV   ++  ++AI
Sbjct: 314 ATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNAI 373

Query: 361 EKLIEKKV 368
             L ++++
Sbjct: 374 RTLTQREL 381


>gi|125580822|gb|EAZ21753.1| hypothetical protein OsJ_05388 [Oryza sativa Japonica Group]
          Length = 516

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 142/401 (35%), Positives = 220/401 (54%), Gaps = 30/401 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF DL L   ++  + + G V+PTPIQ++ +P+VL   D+ GIA TG+GKT  FVLP++ 
Sbjct: 72  DFRDLRLPEPMLRKLREKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIM 131

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
           +  +    + +     P  +I+ P+RELA Q  D  E++           +   L IGG+
Sbjct: 132 VALQEEMMMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLVPLKEAGYPEIRPLLCIGGV 191

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              AQ   +++G  +++ TPGR+ D   + K+ ++N   L +DEADR++D+GF   I+ +
Sbjct: 192 DMRAQLDVVKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 251

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q  +++ L  P  + VN   + A  ++   V    +Y K
Sbjct: 252 FDHFKAQRQTLLFSATMPKKIQNFAKSALVKP--VIVNVGRAGAANLD---VIQEVEYVK 306

Query: 231 KCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A +  LL+  Q T    ++FC  K +V  +   L  +G    AIHG  DQ  R   + 
Sbjct: 307 EDARIIYLLECLQKTPPPVLVFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERENAIE 366

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T +
Sbjct: 367 FFKNGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 426

Query: 350 AKE-------DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
            K        D+KH      L+++    +   L+ LN PLE
Sbjct: 427 NKNQTETTLLDLKH------LLKEAKQRIPPVLAELNDPLE 461


>gi|60501851|gb|AAX22125.1| vasa-2 [Carassius auratus]
          Length = 677

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 148/427 (34%), Positives = 233/427 (54%), Gaps = 33/427 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 240 MTFDEAGLCESLRKNVTKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 299

Query: 61  T-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G A      V+ P  +I+ PTREL  Q+     K+     +   ++ GGI    
Sbjct: 300 QRLMADGVAASKFSEVQEPEAIIVAPTRELINQIYLEAGKFAYGTCVRPVVVYGGINTGY 359

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +++ +G ++L  TPGR+LD   RGK+ ++ +  LV+DEADRMLDMGF P ++ +    
Sbjct: 360 TIREVLKGCNILCGTPGRLLDIIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRKLVGSP 419

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +++Q+++ +FL+ +   + V         +E   +    QYS
Sbjct: 420 GMPSKEDRQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIIQV-DQYS 478

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL  LL+S  T +  ++F   K++   +   L ++  S  +IHG+ +QR R K LS
Sbjct: 479 KRDQLLD-LLRSTGTERT-MVFVETKRSADFIATFLCQEKLSTTSIHGDREQREREKALS 536

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G   ++VA+ +AARGLDI  V HV NFD+P+  + Y+HRIGRTGR G   +A +  
Sbjct: 537 DFRTGQCPVLVATSVAARGLDIEQVQHVVNFDLPSSIDEYVHRIGRTGRCGNIRRAVSFF 596

Query: 350 AKE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
             E D     ++ K+       L+G    +   LE+I  + H            +TGF+ 
Sbjct: 597 NPESDTPLARSLAKV-------LSGAQQEVPKWLEEIAFSAHG-----------TTGFNP 638

Query: 409 RKKNYSS 415
           R K ++S
Sbjct: 639 RGKVFAS 645


>gi|229514398|ref|ZP_04403859.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
 gi|229348378|gb|EEO13336.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
          Length = 416

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 132/374 (35%), Positives = 205/374 (54%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A L     +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 11  MSFSSLALSADLIQA-LPKAITEPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 69

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++   + G    L    L GG+    Q   L 
Sbjct: 70  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKTEQQNALA 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 126 ENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 185 VMCSATFSDDLKLKAQQLMRVPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK G+ Q+++
Sbjct: 244 HQ--WPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLI 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 302 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAI 361

Query: 361 EKLIEKKVDWLNGD 374
             L ++++   N D
Sbjct: 362 RTLTQRQLPVQNLD 375


>gi|262169246|ref|ZP_06036939.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|262022527|gb|EEY41235.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
          Length = 406

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 132/374 (35%), Positives = 205/374 (54%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A L     +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 1   MSFSSLALSADLIQA-LPKAITEPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++   + G    L    L GG+    Q   L 
Sbjct: 60  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKTEQQNALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 116 ENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 175 VMCSATFSDDLKLKTQQLMRVPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 233

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK G+ Q+++
Sbjct: 234 HQ--WPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAI 351

Query: 361 EKLIEKKVDWLNGD 374
             L ++++   N D
Sbjct: 352 RTLTQRQLPVQNLD 365


>gi|242043730|ref|XP_002459736.1| hypothetical protein SORBIDRAFT_02g009590 [Sorghum bicolor]
 gi|241923113|gb|EER96257.1| hypothetical protein SORBIDRAFT_02g009590 [Sorghum bicolor]
          Length = 512

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 130/341 (38%), Positives = 186/341 (54%), Gaps = 8/341 (2%)

Query: 16  VLD--AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM- 72
           VLD  + + +P+PIQ    P +L   D  GIA TG+GKT +F +P L  + K      + 
Sbjct: 105 VLDCCSAFARPSPIQAHAWPFLLDGRDFIGIAATGSGKTIAFGVPALMHIRKKVGGKAVK 164

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              PR L+L PTRELA Q+AD   + G    +    L GG   E Q   L+ G D++I T
Sbjct: 165 KAVPRCLVLSPTRELAQQIADVLSEAGAPCGIKSVCLYGGTKKEPQISALKSGVDIVIGT 224

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGR+ D    G   +N +  +V+DEADRMLDMGF P ++ I S     RQ ++FSAT   
Sbjct: 225 PGRMKDLIEMGVCRLNEVSFVVLDEADRMLDMGFEPEVRAILSQTSSVRQMVMFSATWPL 284

Query: 190 ELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
            + K+++ F+  NP ++ + +    A       V      ++   LL  L +      N 
Sbjct: 285 AVHKLAQEFMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRTRDSRLLALLDKYHQAQSNR 344

Query: 249 I-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
           + +F   KK    +   L+++G+   ++HG+  Q  R K LS FKEG   LM+A+D+A+R
Sbjct: 345 VLVFVLYKKEAARVETMLQRRGWKAVSVHGDKAQHDRTKALSLFKEGKCPLMIATDVASR 404

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           GLDIPDV  V N+  P   E+Y+HRIGRTGRAG+ G A T 
Sbjct: 405 GLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTF 445


>gi|332767614|gb|EGJ97807.1| ATP-dependent RNA helicase, specific for 23S rRNA [Shigella
           flexneri 2930-71]
          Length = 430

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 129/347 (37%), Positives = 203/347 (58%), Gaps = 10/347 (2%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84
           TP+Q   +P +L   DV   A+TG+GKTA+F L +L  ++   A +   + L+L PTREL
Sbjct: 2   TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID---ASLFQTQALVLCPTREL 58

Query: 85  AAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           A QVA    +  +   N  +  L GG PF  Q   L+    +++ TPGR+LDH  +G + 
Sbjct: 59  ADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVS 118

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           ++ +  LV+DEADRMLDMGF   I ++    P +RQTLLFSAT  + +  +S    ++P 
Sbjct: 119 LDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPL 178

Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
            IE+++ +     IE  F  T ++   K  LLQ+LL S     + ++FCN KK+   +C 
Sbjct: 179 AIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPSSCVVFCNTKKDCQAVCD 234

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
           +L +   S  ++HG+++QR   + L  F  G+ +++VA+D+AARGLDI  +  V NF++ 
Sbjct: 235 ALNEVEQSALSLHGDLEQRD--QTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELA 292

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
              E ++HRIGRT RAG  G A +  A E+ +  + I  +++ K++W
Sbjct: 293 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNW 339


>gi|223590190|sp|A5DAC8|DBP3_PICGU RecName: Full=ATP-dependent RNA helicase DBP3
 gi|190344457|gb|EDK36135.2| hypothetical protein PGUG_00233 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 534

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 129/338 (38%), Positives = 194/338 (57%), Gaps = 6/338 (1%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTLILE 79
           + KPTPIQ  + P +L   DV G+A+TG+GKT +F +P +  I+   +  +R+   L + 
Sbjct: 149 FPKPTPIQSASWPYLLNGDDVVGVAETGSGKTFAFGVPAINNIITDNKKGLRV---LCIS 205

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA Q+ DN     KN  LT   + GG+P + Q K + + A V++ TPGR++D  N 
Sbjct: 206 PTRELALQIYDNLTMLTKNCGLTCVAIYGGVPKDQQIKAV-KTASVVVATPGRLVDLLND 264

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
           G + ++ I+ LV+DEADRML+ GF   I+NI       RQTL+F+AT   E+++++  F+
Sbjct: 265 GAVDLSTIDYLVLDEADRMLEKGFEEDIKNIIGCTNKQRQTLMFTATWPKEVRELAATFM 324

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
               ++ +      A                K   L QLL+   + +  ++F   KK   
Sbjct: 325 NKAVKVSIGNRDELAANKRITQTVEVMDPRDKERRLLQLLRQYGSDQKILVFALYKKEAT 384

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            +   L + GF+V AIHG++ Q+ R   L +FK G   L++A+D+AARGLDIP+V  V N
Sbjct: 385 RVEAMLRRSGFNVAAIHGDLSQQQRTSALDSFKRGDSNLLLATDVAARGLDIPNVKVVIN 444

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
              P   E+Y+HRIGRTGRAG+ G A TL  + + KH+
Sbjct: 445 LTFPLTVEDYVHRIGRTGRAGQTGIAHTLFTEHE-KHL 481


>gi|15898685|ref|NP_343290.1| ATP-dependent RNA helicase [Sulfolobus solfataricus P2]
 gi|284175881|ref|ZP_06389850.1| ATP-dependent RNA helicase [Sulfolobus solfataricus 98/2]
 gi|13815150|gb|AAK42080.1| ATP-dependent RNA helicase [Sulfolobus solfataricus P2]
 gi|261603175|gb|ACX92778.1| DEAD/DEAH box helicase domain protein [Sulfolobus solfataricus
           98/2]
          Length = 343

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 129/357 (36%), Positives = 203/357 (56%), Gaps = 20/357 (5%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           LS  +  A+ +AGY+KPT +Q   IP +L    V   A+TG+GKTA++V+P+L       
Sbjct: 5   LSEDLRKALSEAGYIKPTKVQEVVIPELLNGKSVIAQAKTGSGKTAAYVIPILE------ 58

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
              R    LIL PTRELA Q+ D   K GK   + V+L+IGG+ ++ Q     R + +++
Sbjct: 59  ---RNSTALILSPTRELATQILDEIRKLGKYKQIDVSLIIGGMSYDGQ-----RQSRIVV 110

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+LD +++GK+  +  +++++DEADRMLDMGFI  I+ I +     + T  FSAT+
Sbjct: 111 GTPGRLLDLWSKGKIDFSGYDVIIVDEADRMLDMGFIDDIRMILNH-SNAKITGFFSATI 169

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
            DE+  +++ F ++ + I ++      E ++  FV     +S K + L + +  +  +  
Sbjct: 170 PDEIMTLAKEFSKDLREIVLD-EYKPVEEVKQIFVKVRNDWSDKVSKLLEEISGEKIL-- 226

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
             +F   +     L   L  +G +V  + G++ Q  R+K    FK+G   ++VA+DLA+R
Sbjct: 227 --VFARTRDRARKLYFLLRGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVATDLASR 284

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           G+DI DV  V NFD+P   E YIHR+GRTGR GR G+A T     +   I  I  L+
Sbjct: 285 GIDIVDVDKVINFDIPRDVETYIHRVGRTGRMGRVGQAVTFYTFREADMIKRINNLL 341


>gi|258624294|ref|ZP_05719243.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM603]
 gi|258583445|gb|EEW08245.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM603]
          Length = 434

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 132/366 (36%), Positives = 200/366 (54%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A L     +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 23  MSFSSLALSADLIQA-LPKEITQPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    +TL+L PTRELA QV++     G    L    L GG+    Q   L 
Sbjct: 82  ERLKTSPEQ----QTLVLVPTRELAMQVSEVLTHVGTPLGLNTLCLCGGVDKAEQQNALA 137

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 138 ENPNILVATTGRLFDLTQSG-LSLNRVTTLVLDEADRLLDMGFWPQVQALASQTASVRQT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  +  P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 197 VMCSATFSDDLKLKAQQLMHAPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK GT Q+++
Sbjct: 256 HQ--WSQVLVFIGAKENADSLTKKLNKAGVVATALHGDKSQAQRETALAEFKNGTTQVLI 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 314 ATDLLARGIHIEQLPVVINFELPMHAEAYVHRVGRTARAGQQGIALSLVCHGEMDALNAI 373

Query: 361 EKLIEK 366
             L ++
Sbjct: 374 RTLTQR 379


>gi|226468596|emb|CAX69975.1| ATP-dependent rRNA helicase RRP3 [Schistosoma japonicum]
 gi|226484750|emb|CAX74284.1| ATP-dependent rRNA helicase RRP3 [Schistosoma japonicum]
          Length = 563

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 141/388 (36%), Positives = 211/388 (54%), Gaps = 42/388 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LG+  ++  A  +  + +PT IQ+ +IP  L+  ++  +A+TG+GKT ++ LP++  
Sbjct: 6   FSELGIGDELQKACHNLRWKEPTAIQVLSIPPALEGRNLVALAETGSGKTGAYALPIIQK 65

Query: 63  LEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L      ++ P     L+L PTRELAAQV   F   GK   L+ ALL+GG+P   Q+  +
Sbjct: 66  L------LQNPHPFFALVLAPTRELAAQVQAQFNALGKTIGLSTALLVGGVPITQQSDLM 119

Query: 120 E-RGADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           +     V+I TPGR +DH  + K    L   N+ ILVIDEADRML + F   I+ I  +V
Sbjct: 120 KISPPHVVIATPGRFVDHLKKTKGFDELKFKNLRILVIDEADRMLGVDFESVIEKILCIV 179

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET--------IEHCFVATYA 226
           P  RQT LFSATMTD++ K+    + +P R+        + T        +  C + TY 
Sbjct: 180 PTKRQTFLFSATMTDKVGKLQRASVHDPVRVSTRKSKFQSLTNLRQYVHLVPQCEIDTYL 239

Query: 227 QYSKKCALLQQL---------LQS---------QDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
            Y  + AL  ++         LQS         Q  M   +I   + +   N  + L +Q
Sbjct: 240 VYLLRVALCPEIQVPGLDLIKLQSTSENEDSDDQSFMSTSVIVFTRTRVASNRLNLLLRQ 299

Query: 269 GFS--VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
                V A++G++ Q  R+  L  FK     ++VA+D+A+RGLDIP VG V N+DVP  A
Sbjct: 300 FLRQPVIALNGDMLQAQRLGALHKFKRTQGAVLVATDVASRGLDIPQVGLVVNYDVPLDA 359

Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           + Y+HR+GRT RAGRHG A TL+ +  +
Sbjct: 360 KIYMHRVGRTARAGRHGCALTLLTQYSV 387


>gi|91218309|ref|ZP_01255254.1| superfamily II DNA and RNA helicases [Psychroflexus torquis ATCC
           700755]
 gi|91183518|gb|EAS69916.1| superfamily II DNA and RNA helicases [Psychroflexus torquis ATCC
           700755]
          Length = 443

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 132/362 (36%), Positives = 215/362 (59%), Gaps = 10/362 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  +  +++D     PT +Q KTIP+VL Q  D+  +++TG+GKTA+F LP+L 
Sbjct: 5   FLDLGINEHLQRSLVDLQISVPTEVQEKTIPVVLNQNEDLVVLSKTGSGKTAAFGLPLLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
           +++     ++   TLIL PTREL  Q+ +N   +    + + +A L GG P + Q + L 
Sbjct: 65  LIDTENTSIQ---TLILAPTRELGQQIYNNLISFASWSDQIHIASLCGGTPIKPQIENLN 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LD   R  + + +++ +V+DEAD ML       +  I   +P TR+T
Sbjct: 122 STTHLVVATPGRLLDLIKREAIDLKHLKYVVLDEADEMLS-ALKFEVDTIIKAIPKTRRT 180

Query: 181 LLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLF+ATM+  ++++ +N++ ++   IEV+T +   + I+H +V    +  +K  +L   L
Sbjct: 181 LLFTATMSGTVKQLVQNYMSKDLVTIEVDTTTLGHQGIDHHYVV--VEPIEKLDVLLHFL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+   + GIIFC  K  V  L   L    FS  AIHG++ Q  R +I+  F+EG I ++
Sbjct: 239 NSKGG-ERGIIFCKTKAAVNKLAKKLAINKFSSGAIHGSLTQGIRDRIMGQFREGHIDIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+D+ +V +V N+ +P+  E Y+HR GRT RAG  G + T++  E+I  I  
Sbjct: 298 VATDLAARGIDVKEVSYVVNYHLPDTYEAYVHRSGRTARAGAKGLSLTILQHEEIAEITD 357

Query: 360 IE 361
            E
Sbjct: 358 FE 359


>gi|327485960|gb|AEA80366.1| ATP-dependent RNA helicase VCA0990 [Vibrio cholerae LMA3894-4]
          Length = 406

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 132/374 (35%), Positives = 205/374 (54%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A L     +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 1   MSFSSLALSADLIQA-LPKAITEPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++   + G    L    L GG+    Q   L 
Sbjct: 60  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKTEQQNALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 116 ENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 175 VMCSATFSDDLKLKAQQLMRVPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 233

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK G+ Q+++
Sbjct: 234 HQ--WPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAI 351

Query: 361 EKLIEKKVDWLNGD 374
             L ++++   N D
Sbjct: 352 RTLTQRQLPVQNLD 365


>gi|74096143|ref|NP_001027593.1| DEAD-Box Protein [Ciona intestinalis]
 gi|4126716|dbj|BAA36711.1| DEAD-Box Protein [Ciona intestinalis]
          Length = 659

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 127/352 (36%), Positives = 202/352 (57%), Gaps = 12/352 (3%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKG 66
           L   ++  V  AGY +PTP+Q  +IP++    D+   AQTG+GKTA+F+LP+LT ++E G
Sbjct: 210 LQETILVNVQKAGYDRPTPVQKYSIPIINADRDLMACAQTGSGKTAAFLLPVLTKLVESG 269

Query: 67  R-----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                 +  + P+ +I+ PTREL  Q+     K+ ++  +   ++ GG     Q + +++
Sbjct: 270 VKSSEFSEKKTPQAIIIGPTRELVNQIFLEARKFSRSTIIHPVVVYGGTSVGYQIRAVQK 329

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----T 177
           G DVLI TPGR++D  NRG + + N+  +++DEADRMLDMGF   I+ + SL        
Sbjct: 330 GCDVLIATPGRLMDFINRGLIGLENVRFIILDEADRMLDMGFESEIRKLVSLPGMPQKNN 389

Query: 178 RQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           R TL+FSAT  DE+QK++ +FL ++   + V         +    ++   +  K+  LL+
Sbjct: 390 RHTLMFSATFPDEIQKLAHDFLREDFLFLTVGRVGGACSDVTQTVISVEWK-DKRSKLLE 448

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +    +T    ++F   K+    L   L ++ F   +IHG+  Q+ R + L +FK    
Sbjct: 449 LIADVNETKSRTLVFVETKRGADFLACVLCQEDFPTTSIHGDRLQQDREQALRDFKLAVC 508

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            ++VA+ +AARGLDIP V HV N+D+P   + Y+HRIGRTGR G  G+A T 
Sbjct: 509 PILVATSVAARGLDIPKVEHVINYDMPREIDEYVHRIGRTGRCGNLGRATTF 560


>gi|224129414|ref|XP_002328711.1| predicted protein [Populus trichocarpa]
 gi|222839009|gb|EEE77360.1| predicted protein [Populus trichocarpa]
          Length = 587

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 140/403 (34%), Positives = 222/403 (55%), Gaps = 30/403 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+     ++  +   G V+PTPIQ++ +P++L   D+ GIA TG+GKT  FVLP++ I
Sbjct: 144 FKDMRFPEPILKMLKAKGIVQPTPIQVQGLPVILTGRDMIGIAFTGSGKTLVFVLPLIMI 203

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKY-----GKNY-NLTVALLIGGIP 111
             +    + +     P  LI+ P+RELA Q  +  E++        Y  L   L IGG+ 
Sbjct: 204 ALQEEIMMPIMPGEGPVGLIVCPSRELARQTYEVVEEFLIPMRAAGYPELRPLLCIGGVD 263

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
             +Q + +++G  +++ TPGR+ D   + K+ ++N   L +DEADR++D+GF   I+ + 
Sbjct: 264 MRSQLEVVKKGVHIVVATPGRLKDMLAKKKMSLDNCRYLTLDEADRLVDLGFEDDIREVF 323

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTLLFSATM  ++Q  + + L  P  + VN   + A  ++   V    +Y K+
Sbjct: 324 DHFKAQRQTLLFSATMPTKIQNFARSALVKP--VTVNVGRAGAANLD---VIQEVEYVKQ 378

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    ++FC  K +V ++   L  +G    A+HG  DQ  R   +S+
Sbjct: 379 EAKIVYLLECLQKTPPPVLVFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISS 438

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 439 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 498

Query: 351 KE-------DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
           K        D+KH      L+++    +   L+ LN P+E  D
Sbjct: 499 KNQSETTLLDLKH------LLQEAKQRIPPVLAELNDPMEDGD 535


>gi|322493239|emb|CBZ28524.1| putative DEAD box RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 389

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 128/373 (34%), Positives = 207/373 (55%), Gaps = 6/373 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   GY +PT IQ + I   L+  DV   A +GTGKT++F +    +
Sbjct: 19  FEAMGLKEDLLKGMYSFGYKQPTAIQKRFIMPFLKGRDVIAQASSGTGKTSAFCV---CL 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+      R  + LIL PTRELA Q  D     G +  LT    IGG   E   ++LE G
Sbjct: 76  LQACDPHTREAQALILSPTRELAVQTQDLCNNIGHHMGLTAYACIGGKSTEEDIRRLESG 135

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L +N ++ LV+DEAD ML  GF   I +I  +VP   Q +L
Sbjct: 136 VHIISGTPGRVFDMIRRKSLRVNGLKTLVLDEADEMLGKGFKAQIHDIYRMVP-PLQIIL 194

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  ++ +++E F+  P  I V     T ++++  FV+   + +K   L++  L   
Sbjct: 195 VSATLPADVLEMTEKFMTEPASILVKRDEITVDSVKQYFVSVDEEKNKFDVLME--LYDS 252

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+ + ++FCN +K V  L   + ++ F+V A+HG++ Q  R +I+  F+ G  ++++ +
Sbjct: 253 LTIAHAVVFCNTRKKVEQLAKKMTREKFAVTAMHGDMPQAERDEIMRQFRNGHSRVLITT 312

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V ++D+P   E YIHRIGRTGR GR G A T V  ++++ +  IE+
Sbjct: 313 DLWARGIDVERVSLVLSYDLPLSREQYIHRIGRTGRMGRTGLAITFVRHDELRLLRDIEQ 372

Query: 363 LIEKKVDWLNGDL 375
               +++ L  ++
Sbjct: 373 FYATQIEELPANI 385


>gi|2500535|sp|Q12389|DBP10_YEAST RecName: Full=ATP-dependent RNA helicase DBP10; AltName: Full=DEAD
           box protein 10
 gi|1279685|emb|CAA96458.1| unknown [Saccharomyces cerevisiae]
 gi|1431010|emb|CAA98590.1| DBP10 [Saccharomyces cerevisiae]
          Length = 995

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 134/418 (32%), Positives = 218/418 (52%), Gaps = 53/418 (12%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GLS  V+  +   G+ +PTPIQ KTIPL+LQ  D+ G+A+TG+GKTA+F+LPM+  
Sbjct: 139 FPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEK 198

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    ++   R +IL P+RELA Q  + F+ + +   L   LL GG   E Q   +   
Sbjct: 199 LKSHSGKI-GARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMTN 257

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV+I TPGR L       L + ++E +V DEADR+ +MGF   +  + + +P TRQTLL
Sbjct: 258 PDVIIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLASLPTTRQTLL 317

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-------------------- 222
           FSAT+ + L    +  L NP  + ++  +  +E +E  F+                    
Sbjct: 318 FSATLPNSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNADREANLLYILQEIIK 377

Query: 223 ---ATYAQYSK--------------------------KCALLQQLLQSQDTM---KNGII 250
              AT  Q  K                          K    +Q + + + +   K  I+
Sbjct: 378 IPLATSEQLQKLQNSNNEADSDSDDENDRQKKRRNFKKEKFRKQKMPAANELPSEKATIL 437

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F   + +V  +   L   G+ +  I+G +DQ +R + L NF+ G   ++V +D+AARG+D
Sbjct: 438 FVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLYNFRAGLTSILVVTDVAARGVD 497

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           IP + +V N+ +P  ++ ++HR+GRT RAG  G A+++VA+ ++ ++  +E  + KK+
Sbjct: 498 IPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLLDLELFLGKKI 555


>gi|320587284|gb|EFW99764.1| ATP-dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 481

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 148/421 (35%), Positives = 223/421 (52%), Gaps = 35/421 (8%)

Query: 3   FADLGLSPKV--VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           F +LGL   +  VC +L  GY  PTPIQ   IP+ L+  D+ G A+TG+GKT +F LPML
Sbjct: 72  FKELGLVDALCEVCEML--GYTAPTPIQAAAIPVALKNRDIIGTAETGSGKTIAFALPML 129

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     R R    L+L PTRELA Q+   FE +    +L  A+++GG+   +Q+  L 
Sbjct: 130 QALLD---RPRPLFGLVLSPTRELAVQIGQTFESFAA-ISLRCAVVVGGMDMVSQSIALA 185

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V+  T G  L H          ++ LVIDEADR+LDM F P ++ I   +P  R+T
Sbjct: 186 KKPHVV--TKGFSLKH----------LQYLVIDEADRLLDMDFGPILEKILRHLPRERRT 233

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSATM+ +++ +    L++P R+ V + +  T  T++   + T       C +    L
Sbjct: 234 MLFSATMSSQVESLQRASLRDPVRVNVASSAHQTVSTLKQSVIVTPTTRKDVCLVY---L 290

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   ++ ++F         L   L   GF    +H  + Q  R+  L+  K G+ +++
Sbjct: 291 VNEFYGQSIMVFTRTIYETQRLAILLRALGFGAVPLHARLSQSQRLSALNKIKSGSREML 350

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDIP +G V N+DVP  ++ Y+HR+GRT RAG+ G A  LV + D  H  A
Sbjct: 351 IATDVAARGLDIPHIGIVINYDVPQDSKTYVHRVGRTARAGKSGHAVNLVTQYDHTHFLA 410

Query: 360 IEKLI--EKKVDWLNGD---LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +EK I  E+K+     D   L   NP +E  +  +H H      I Q      +RKK   
Sbjct: 411 VEKAIGMERKILPFPIDREELMMFNPRVE--EAQRHAHVEMRTFIEQNG----KRKKTGR 464

Query: 415 S 415
           S
Sbjct: 465 S 465


>gi|229528115|ref|ZP_04417506.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|229334477|gb|EEN99962.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
          Length = 416

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 132/374 (35%), Positives = 205/374 (54%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A L     +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 11  MSFSSLALSADLIQA-LPKAITEPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 69

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++   + G    L    L GG+    Q   L 
Sbjct: 70  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKTEQQNALA 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 126 ENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 185 VMCSATFSDDLKLKAQQLMRVPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK G+ Q+++
Sbjct: 244 HQ--WPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLI 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 302 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAI 361

Query: 361 EKLIEKKVDWLNGD 374
             L ++++   N D
Sbjct: 362 RTLTQRQLPVQNLD 375


>gi|4126714|dbj|BAA36710.1| DEAD-Box Protein [Ciona intestinalis]
          Length = 669

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 127/352 (36%), Positives = 202/352 (57%), Gaps = 12/352 (3%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKG 66
           L   ++  V  AGY +PTP+Q  +IP++    D+   AQTG+GKTA+F+LP+LT ++E G
Sbjct: 220 LQETILVNVQKAGYDRPTPVQKYSIPIINADRDLMACAQTGSGKTAAFLLPVLTKLVESG 279

Query: 67  R-----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                 +  + P+ +I+ PTREL  Q+     K+ ++  +   ++ GG     Q + +++
Sbjct: 280 VKSSEFSEKKTPQAIIIGPTRELVNQIFLEARKFSRSTIIHPVVVYGGTSVGYQIRAVQK 339

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----T 177
           G DVLI TPGR++D  NRG + + N+  +++DEADRMLDMGF   I+ + SL        
Sbjct: 340 GCDVLIATPGRLMDFINRGLIGLENVRFIILDEADRMLDMGFESEIRKLVSLPGMPQKNN 399

Query: 178 RQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           R TL+FSAT  DE+QK++ +FL ++   + V         +    ++   +  K+  LL+
Sbjct: 400 RHTLMFSATFPDEIQKLAHDFLREDFLFLTVGRVGGACSDVTQTVISVEWK-DKRSKLLE 458

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +    +T    ++F   K+    L   L ++ F   +IHG+  Q+ R + L +FK    
Sbjct: 459 LIADVNETKSRTLVFVETKRGADFLACVLCQEDFPTTSIHGDRLQQDREQALRDFKLAVC 518

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            ++VA+ +AARGLDIP V HV N+D+P   + Y+HRIGRTGR G  G+A T 
Sbjct: 519 PILVATSVAARGLDIPKVEHVINYDMPREIDEYVHRIGRTGRCGNLGRATTF 570


>gi|297845068|ref|XP_002890415.1| hypothetical protein ARALYDRAFT_472328 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297336257|gb|EFH66674.1| hypothetical protein ARALYDRAFT_472328 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 827

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 131/378 (34%), Positives = 208/378 (55%), Gaps = 9/378 (2%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           GL+ K++  +    Y KP PIQ + +P+++   D  G+A+TG+GKT  FVLPML  + K 
Sbjct: 197 GLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHI-KD 255

Query: 67  RARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
           +  V     P  L++ PTREL  Q+  +  K+ K   +    + GG     Q  +L+RG 
Sbjct: 256 QPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGT 315

Query: 124 DVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           ++++CTPGR++D    + GK+  +  +  LV+DEADRM DMGF P I  I   +   RQT
Sbjct: 316 EIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQT 375

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT   +++ ++   L  P  I+V   S   + I    V    +  +   LL+ L +
Sbjct: 376 VLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRPESDRFFRLLELLGE 434

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  K  ++F   ++    L   + K  +   ++HG  DQ  R   +S+FK     L++
Sbjct: 435 WYEKGKI-LVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKSNVCNLLI 493

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+ +AARGLD+ ++  V NFD PN  E+Y+HR+GRTGRAGR G A T ++++D K+   +
Sbjct: 494 ATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDL 553

Query: 361 EKLIEKKVDWLNGDLSSL 378
            K +E     +  DL +L
Sbjct: 554 VKALELSEQPVPDDLKAL 571


>gi|260887674|ref|ZP_05898937.1| ATP-dependent RNA helicase DeaD [Selenomonas sputigena ATCC 35185]
 gi|260862554|gb|EEX77054.1| ATP-dependent RNA helicase DeaD [Selenomonas sputigena ATCC 35185]
          Length = 436

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 129/359 (35%), Positives = 200/359 (55%), Gaps = 10/359 (2%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR 71
           +V A+   G  + T +Q + IP V    D    AQTGTGKT +F+LP+L  + KG ARV 
Sbjct: 2   LVDALARQGIREATLVQEQAIPAVRSGRDAIVQAQTGTGKTLAFLLPLLERI-KGNARV- 59

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
             + L++ PTRELA Q A   +       +  AL+ GG   E Q  KL +   ++I TPG
Sbjct: 60  -AQALVVSPTRELAMQTARVAKTLADAVGIRTALVYGGQDIERQKDKLRQKPQLIIATPG 118

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+LDH  R  + ++ +  +V+DEAD ++ +GF+  ++ +   +    Q +LFSATM + +
Sbjct: 119 RLLDHLRRHSVELSQVNKIVLDEADELMRLGFVEDVETMLEALAGDHQLMLFSATMPERI 178

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQYSKKCALLQQLLQSQDTMKNGI 249
           + ++  +++ P+ I V     T   IE   V T    +  K C LL +    Q  +   +
Sbjct: 179 RALTRRYMKEPREITVQPECVTLANIEQVIVDTREDTKLDKLCELLNKY---QPYL--AM 233

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           +FC+ K+ V ++   L  +G+ V  +HG++ Q  R  ++  F+E  +Q++V +D+AARGL
Sbjct: 234 VFCHTKQKVAHVTLELAGRGYLVDELHGDLTQTQRNLVMRRFREAKLQILVVTDIAARGL 293

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           DI  V HVFN+D+P   E YIHRIGRTGRAG  G A T V       +  IE  I+ ++
Sbjct: 294 DIEGVTHVFNYDLPQDTEWYIHRIGRTGRAGAKGLAVTFVNAHQYDQLRRIEAGIKARL 352


>gi|332021296|gb|EGI61675.1| Putative ATP-dependent RNA helicase DDX27 [Acromyrmex echinatior]
          Length = 740

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 200/353 (56%), Gaps = 2/353 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + LS  ++ A+    +V+PTPIQ  TIP  L   D+CG A TGTGKTA+++LP+L  
Sbjct: 153 FYQMNLSRPLLKAITTMNFVQPTPIQAATIPAALMGRDICGCAATGTGKTAAYMLPILER 212

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +      + R L+L PTREL  QV    ++  +   + + L +GG+  + Q   L +
Sbjct: 213 LLYRPLDGPSISRVLVLVPTRELGVQVYQVAKQLAQFTTIEIGLSVGGLDVKIQEGVLRK 272

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I      TRQT
Sbjct: 273 NPDIVIATPGRLIDHLRNAPTFSLDSIEVLILDEADRMLDEYFAEQMKYIVKQCSRTRQT 332

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+E++ ++   L  P +I V++    A  +   F+    +       +   L 
Sbjct: 333 ILFSATMTEEVEDLAAVSLDKPIKIFVDSNQDVAFNLRQEFIRIRKEREGDREAILAALV 392

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F   KK    L   L   G  V  +HGN+ Q  R++ L  FK+  I +++
Sbjct: 393 CRTFHDHTMVFLQTKKQAHRLHILLGLLGVKVGELHGNLTQPQRLENLRKFKDEEIDILL 452

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           A+D+AARGLDI  V  V NF +P   ++YIHR+GRT RAGR G + +L  +++
Sbjct: 453 ATDVAARGLDISGVKTVINFVMPATLQHYIHRVGRTARAGRGGVSVSLAGEQE 505


>gi|332289421|ref|YP_004420273.1| ATP-dependent RNA helicase RhlB [Gallibacterium anatis UMN179]
 gi|330432317|gb|AEC17376.1| ATP-dependent RNA helicase RhlB [Gallibacterium anatis UMN179]
          Length = 399

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 129/393 (32%), Positives = 214/393 (54%), Gaps = 31/393 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P ++ A+   G    TPIQ  ++P  L   D+ G AQTGTGKT +F+  +   
Sbjct: 11  FSDFNLHPNILSALQKMGMTYCTPIQADSLPYSLAGKDIAGQAQTGTGKTVAFLTALFQK 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +  A       +IL PTRELA Q+  + + + +   L + L  GG  ++ Q + L++G
Sbjct: 71  LIQEPASHHTLAAIILAPTRELAVQIYHDAQHFAQTTGLKLGLAYGGDGYDKQLQALQQG 130

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV--PFTRQT 180
            ++LI T GR++D+  +  + +++++++V+DEADRM D+GFI  I+ I      P  R T
Sbjct: 131 VNILIGTTGRVIDYMKQRIISLDHVQVVVLDEADRMFDLGFIRDIRYILRHCPPPSERLT 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLL 239
           +LFSAT++ ++++++   + +P  IE+ +   TA+T+ E  F  +               
Sbjct: 191 MLFSATLSFKVRELAFEDMNDPHYIEIESAYKTADTVKEELFYPS--------------- 235

Query: 240 QSQDTMKNG------------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
            +QD M+              IIF N K     +   L         + G++ Q+ R  +
Sbjct: 236 -NQDKMRLLLTLLEEEWPERCIIFANTKHQCEKIWQYLLADQLRAGLLTGDVPQKKRFAL 294

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L  F  G + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG +G + +
Sbjct: 295 LEQFANGQLDILVATDVAARGLHIPQVTHVFNYDLPDDYEDYVHRIGRTGRAGENGISIS 354

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNP 380
              ++   ++ AIE+ I   +   + D S+L P
Sbjct: 355 FACEDYAVNLPAIEQYIGHSIPVSHYDPSALLP 387


>gi|119480453|ref|XP_001260255.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
 gi|134034069|sp|A1DG51|DBP3_NEOFI RecName: Full=ATP-dependent RNA helicase dbp3
 gi|119408409|gb|EAW18358.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
          Length = 503

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 131/345 (37%), Positives = 195/345 (56%), Gaps = 11/345 (3%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVR--MPRT 75
           + +  PTPIQ  T PL+    DV GIA+TG+GKT +F LP +  IL+ G+ + +   P  
Sbjct: 103 SSFSSPTPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARPAA 162

Query: 76  LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           +I+ PTRELA Q+ D   K+G + ++ V  + GG+  + Q + L+  A +++ TPGR+ D
Sbjct: 163 VIISPTRELAMQIYDQLSKFGASVDIRVTCIYGGVKKDEQREALKTAA-IVVATPGRLKD 221

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQTLLFSATMTDELQKV 194
             N G + +  ++ LV+DEADRMLD GF   I++I   +P + RQT++F+AT    ++ +
Sbjct: 222 LQNDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIIRSMPDSKRQTVMFTATWPPSVRDL 281

Query: 195 SENFLQNPKRIEVNTPSST---AETIEHCFVATYAQYSKKCALLQQLLQSQ---DTMKNG 248
           +  F+ +   + +    S    A T     V       K+  L+Q L +SQ         
Sbjct: 282 AATFMTSAVTVTIGGDPSADPRANTRIKQVVEVVKPQEKEARLVQLLNRSQRGAAVCDKV 341

Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           ++FC  KK  V +   L  + F V  IHG+++Q  R K L  FK G   ++VA+D+AARG
Sbjct: 342 LVFCLYKKEAVRVERLLRTKNFKVAGIHGDLNQHERFKSLEAFKTGAATVLVATDVAARG 401

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           LDIP V  V N   P   E+Y+HRIGRTGRAG  G A TL  + D
Sbjct: 402 LDIPSVKLVINVTFPLTVEDYVHRIGRTGRAGADGHAITLFTETD 446


>gi|259145212|emb|CAY78476.1| Dbp10p [Saccharomyces cerevisiae EC1118]
          Length = 995

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 134/418 (32%), Positives = 218/418 (52%), Gaps = 53/418 (12%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GLS  V+  +   G+ +PTPIQ KTIPL+LQ  D+ G+A+TG+GKTA+F+LPM+  
Sbjct: 139 FPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEK 198

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    ++   R +IL P+RELA Q  + F+ + +   L   LL GG   E Q   +   
Sbjct: 199 LKSHSGKI-GARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMTN 257

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV+I TPGR L       L + ++E +V DEADR+ +MGF   +  + + +P TRQTLL
Sbjct: 258 PDVIIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLASLPTTRQTLL 317

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-------------------- 222
           FSAT+ + L    +  L NP  + ++  +  +E +E  F+                    
Sbjct: 318 FSATLPNSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNADREANLLYILQEIIK 377

Query: 223 ---ATYAQYSK--------------------------KCALLQQLLQSQDTM---KNGII 250
              AT  Q  K                          K    +Q + + + +   K  I+
Sbjct: 378 IPLATSEQLQKLQNSNNEADSDSDDENDRQKKRRNFKKEKFRKQKMPAANELPSEKATIL 437

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F   + +V  +   L   G+ +  I+G +DQ +R + L NF+ G   ++V +D+AARG+D
Sbjct: 438 FVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLYNFRAGLTSILVVTDVAARGVD 497

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           IP + +V N+ +P  ++ ++HR+GRT RAG  G A+++VA+ ++ ++  +E  + KK+
Sbjct: 498 IPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLLDLELFLGKKI 555


>gi|109095726|ref|XP_001086008.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
           [Macaca mulatta]
          Length = 406

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 200/368 (54%), Gaps = 58/368 (15%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT I I+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 26  FKDLGVT-DVLCEACDQLGWTKPTKILIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++  ++   +++  K         
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKSK--------- 252

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                                                      R+  L+ FK     +++
Sbjct: 253 -------------------------------------------RLGSLNKFKAKARSILL 269

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 270 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 329

Query: 361 EKLIEKKV 368
           E LI KK+
Sbjct: 330 EHLIGKKL 337


>gi|168049229|ref|XP_001777066.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671509|gb|EDQ58059.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 616

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 139/404 (34%), Positives = 227/404 (56%), Gaps = 30/404 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     ++  +   G  +PTPIQ++ +P++L   D+ GIA TG+GKT  FVLP++ 
Sbjct: 172 NFKDMRFPDPILKKLKAKGITRPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPLIM 231

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYG-----KNY-NLTVALLIGGI 110
           +  +   R+ +     P  L++ P+RELA Q  D  E++      K Y  L   L IGGI
Sbjct: 232 LALQEEVRMPLIGGEGPFGLVVCPSRELARQTYDVVEEFTAVLSEKGYPQLRSMLCIGGI 291

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + ++ G  +++ TPGR+ D   + K+ ++N + L +DEADR++D+GF   I+ +
Sbjct: 292 DMRSQLEVVKHGVHIVVATPGRLKDMLAKKKMNLDNCKYLTLDEADRLVDLGFEEDIREV 351

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q  +++ L  P  + VN   + A  ++   V    +Y K
Sbjct: 352 FDHFRGQRQTLLFSATMPKKIQNFAKSALVKP--VVVNVGRAGAANLD---VIQEVEYVK 406

Query: 231 KCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A +  LL+  Q T    +IFC  K +V ++   L  +G    AIHG  DQ  R   ++
Sbjct: 407 QEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREFAIA 466

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A + +
Sbjct: 467 SFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATSFI 526

Query: 350 AKE-------DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
            K        D+KH      L+++    +   L++L+ P+E+ +
Sbjct: 527 NKNQSETILLDLKH------LLKEAKQRIPPVLATLDDPMEEAE 564


>gi|156552297|ref|XP_001600622.1| PREDICTED: similar to LD28101p [Nasonia vitripennis]
          Length = 782

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 127/358 (35%), Positives = 207/358 (57%), Gaps = 8/358 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V+  +L  GY  PTPIQ KTIP+ L   DV  +A+TG+GKTA F++PM   
Sbjct: 40  FQSMGLSQSVIRGILKRGYKIPTPIQRKTIPIALDGRDVVAMARTGSGKTACFLIPMFEK 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  +A+    R LIL PTRELA Q     ++ G+   L  ++++GG   + Q   +   
Sbjct: 100 LKTRQAKTGA-RALILSPTRELALQTQRFIKEIGRFTGLKSSVILGGDSMDNQFSAIHGN 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR L       + + +IE ++ DEADR+ +MGF   I  I + +P  RQTLL
Sbjct: 159 PDIIVATPGRFLHICIEMDMNLKSIEFVIFDEADRLFEMGFGEQIHEIANRLPKNRQTLL 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L+NP  + ++  S   + ++ CF+    +  +K A+L  LL+  
Sbjct: 219 FSATLPKVLVEFATAGLRNPVLVRLDVESKLPDELKLCFITCRPE--EKLAVLMCLLKQ- 275

Query: 243 DTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +K G   +IF     +V  +   L++ G     I+ N+D  +R    + F+ G ++++
Sbjct: 276 -VIKPGAQTVIFAATMHHVEYIHQILDQAGILNTFIYSNLDPSARKINAAKFQNGKVKVL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           V +D+AARG+DIP + +V NF+ P +++ +IHR+GR  RAGR G A+ +VA ++  ++
Sbjct: 335 VVTDVAARGIDIPHLDNVINFNFPAKSKLFIHRVGRCARAGRSGTAYNIVAPDEYAYL 392


>gi|73965229|ref|XP_861744.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 10 [Canis
           familiaris]
          Length = 616

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 133/376 (35%), Positives = 205/376 (54%), Gaps = 16/376 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 154 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 209

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 270 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 329

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 330 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 388

Query: 293 EGTIQLMVASDLAAR--GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
            G   +++A+D+A+R  GLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T   
Sbjct: 389 HGKAPILIATDVASRGLGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFT 448

Query: 351 KEDIKHI-DAIEKLIE 365
             +IK + D I  L E
Sbjct: 449 PNNIKQVSDLISVLRE 464


>gi|281209095|gb|EFA83270.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 1070

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 127/356 (35%), Positives = 205/356 (57%), Gaps = 4/356 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   +  A++  G+  PTPIQ KTIPL+L   DV  +A+TG+GKTA+FV+PM+  
Sbjct: 259 FQSMELHKTLFKAIVRKGFKVPTPIQRKTIPLILAGSDVVAMARTGSGKTAAFVVPMIQK 318

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +   +V   R +IL PTRELA Q     + +    NL   L++GG   E Q  +L R 
Sbjct: 319 LGEHSIKV-GARAIILSPTRELAIQTYKVVKDFTYGSNLRSCLVVGGDSMEDQFAELARN 377

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR++ H     + ++ ++ +V DEADR+ +MGF   + +I S +   RQTLL
Sbjct: 378 PDIIVATPGRLVHHLQEVGMGLSTVQYIVFDEADRLFEMGFQQQLNDIVSKLSDNRQTLL 437

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L       L NP  + +++ +  +E +   F     ++ +K A+L  LL+  
Sbjct: 438 FSATLPSMLVDFVRAGLTNPILVRLDSETKISENLALSFYTI--RHDEKLAVLLYLLKEV 495

Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  IIF   K +V  L   L++       IHG +D  +R   L+ F+   + +M+ 
Sbjct: 496 IEDKQPTIIFTATKYHVEYLQIFLKQAKIDSTIIHGYLDPVARKINLAKFRSNNVSVMIV 555

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +D+AARG+DIP + +V NFD P + + ++HR+GR  RAGR G A++LV+ ++I ++
Sbjct: 556 TDIAARGIDIPLLDNVINFDFPPKEKIFVHRVGRVARAGRKGTAYSLVSPDEIPYM 611


>gi|116181632|ref|XP_001220665.1| hypothetical protein CHGG_01444 [Chaetomium globosum CBS 148.51]
 gi|118597484|sp|Q2HEB0|PRP28_CHAGB RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|88185741|gb|EAQ93209.1| hypothetical protein CHGG_01444 [Chaetomium globosum CBS 148.51]
          Length = 705

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 135/434 (31%), Positives = 218/434 (50%), Gaps = 37/434 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A+  L  +++  V + GY +PTPIQ   IP+  Q  D+ G+A TG+GKTA+F+LP+L  
Sbjct: 271 WAESNLPRRLLEIVENVGYDEPTPIQRAAIPIAQQARDLIGVAVTGSGKTAAFLLPLLVY 330

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + +            P  LIL PTREL  Q+     K+      TV  ++GG   E Q  
Sbjct: 331 ISELPPLTEFNKNDGPYALILAPTRELVQQIETEARKFAGPLGFTVVSIVGGHSLEEQAF 390

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GA++++ TPGR++D   R  L+ +    +++DEADRM+D GF   +  I   +P  
Sbjct: 391 ALRNGAEIIVATPGRLVDCLERRLLVFSQCCYIIMDEADRMIDQGFEEPLTKILDALPVA 450

Query: 178 -------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS 212
                                    RQT++++ATM   ++K+++ +L+ P  + +     
Sbjct: 451 NEKPDTEDAENSQLMSRYLGGKDRYRQTMMYTATMPPLVEKIAKKYLRRPAIVTIGNAGE 510

Query: 213 TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             +T+E   V   +   K+   LQ++L S       I+F N K+N   +   ++  G+S 
Sbjct: 511 AVDTVEQR-VEFVSGEDKRKRRLQEILNSGQFKPPVIVFVNIKRNCEMVAKDIKSWGYST 569

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
             +HG+  Q  R   L++ + G   ++VA+DLA RG+D+ DV  V NF++P+  E Y HR
Sbjct: 570 VTLHGSKTQEQREASLASVRNGQANILVATDLAGRGIDVADVSLVVNFNMPSSIEAYTHR 629

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T +  ED   +  ++++I K        +S +   L + + AQ   
Sbjct: 630 IGRTGRAGKSGVAITFLGNEDSDVMYDLKQIISKS------SISKVPEELRRHEAAQSKP 683

Query: 393 ARKNNPIPQKSTGF 406
            R        S GF
Sbjct: 684 TRGGGKKLDDSGGF 697


>gi|194365407|ref|YP_002028017.1| ATP-dependent RNA helicase DbpA [Stenotrophomonas maltophilia
           R551-3]
 gi|194348211|gb|ACF51334.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 458

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 145/382 (37%), Positives = 220/382 (57%), Gaps = 11/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ L LSP +   +   GY   TP+Q +++P +L   DV   A TG+GKTA+F L +L 
Sbjct: 3   DFSTLPLSPALQPGLDALGYTTLTPVQAQSLPAILDGRDVIAQAPTGSGKTAAFGLGLLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++    RV+    L+L PTRELA QV     K      NL + LL+GG+P   Q   LE
Sbjct: 63  AIDPSLIRVQ---ALVLCPTRELADQVGKQIRKLATGIPNLKLLLLVGGVPLGPQLASLE 119

Query: 121 RGAD--VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            G D  V++ TPGR+ +   +  L +  +  LV+DEADRMLDMGF   I+ I       R
Sbjct: 120 -GHDPHVVVGTPGRVQELARKRALNLGAVRTLVLDEADRMLDMGFEEPIREIAGRTHKDR 178

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+LLFSAT  D ++ ++ + L+    + V   +  A  I H F      + +K AL   L
Sbjct: 179 QSLLFSATFPDSIRAMARDLLREAVEVTVEG-ADQAPAIRHMFCEVEPAHRQK-ALAGLL 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+   T ++ ++FCN +K+V  + +SL++ GFS  A+HG+++QR R ++L      +  +
Sbjct: 237 LKY--TPESAVVFCNTRKDVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRSCNV 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASD+AARGLD+ ++  V N+++P   E+Y HR+GRTGRAG  G A +LVA  +    +
Sbjct: 295 LVASDVAARGLDVEELAAVINYELPTDVESYQHRVGRTGRAGASGLAISLVAGREKTRAE 354

Query: 359 AIEKLIEKKVDWLNGDLSSLNP 380
           AIE  + + +DW    L++  P
Sbjct: 355 AIEAQMGQPLDWQKTPLATSRP 376


>gi|157873697|ref|XP_001685353.1| ATP-dependent RNA helicase [Leishmania major strain Friedlin]
          Length = 614

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 132/359 (36%), Positives = 196/359 (54%), Gaps = 16/359 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA + L+P +   V    Y KPTP+Q   IP VL   D+   AQTG+GKTA++++P +  
Sbjct: 137 FATMALAPALAENVNRCRYQKPTPVQKYGIPCVLNGSDLMACAQTGSGKTAAYLIPAINF 196

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +        K       P  L+L PTREL+ Q+ +   K+         ++ GG     Q
Sbjct: 197 MLVNNLNRAKPTNSQAAPSALVLSPTRELSIQIYEEGRKFTYRTGFRCVVVYGGADPRHQ 256

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS--- 172
             +L RG  +L+ TPGR+ D F RG    +++  LV+DEADRMLDMGF P I+ I     
Sbjct: 257 IHELTRGCGLLVATPGRLSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRAIVQGPD 316

Query: 173 ---LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                P  RQTLL+SAT   E+Q+++  FL +   ++V    ST E I    V       
Sbjct: 317 SDMPPPGERQTLLYSATFPKEIQQMAREFLYHHHFLQVGRVGSTTENITQD-VRWVEDMD 375

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL+ L + Q   +  ++F  +K++   L   L +      +IHG+  QR R + L 
Sbjct: 376 KRGCLLEVLKEHQG--ERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALD 433

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            FK G  +++VA+D+A+RGLDIP+V  V  +D+P+  ++Y+HRIGRTGRAG+ G A + 
Sbjct: 434 IFKSGVCRVLVATDVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGRTGRAGKRGTAISF 492


>gi|71030100|ref|XP_764692.1| RNA helicase-1 [Theileria parva strain Muguga]
 gi|68351648|gb|EAN32409.1| RNA helicase-1, putative [Theileria parva]
          Length = 400

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 124/374 (33%), Positives = 210/374 (56%), Gaps = 6/374 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L+  ++  +   G+ +P+ IQ + I  +++ +D  G AQ+GTGKTA+F +  L I
Sbjct: 30  FDALKLNEDLLRGIYSYGFERPSAIQQRGIKPIIENYDTIGQAQSGTGKTATFSIAALQI 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +      V   + LIL PTRELA Q+       G    +     +GG        KL+ G
Sbjct: 90  INYD---VMSCQILILAPTRELAQQIQKVVLALGDYLKVQCHACVGGTVVRDDVHKLKAG 146

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ D   +  LL + +++ ++DEAD ML  GF   IQ++   +P   Q  L
Sbjct: 147 VHMVVGTPGRVYDMIEKKALLTDKMKLFILDEADEMLSRGFKGQIQDVFKRLPPDIQVAL 206

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E+ +++  F+++PKRI V     T E I+  ++    +Y  K   L  L +S 
Sbjct: 207 FSATMPNEILELTTKFMRSPKRILVKKDELTLEGIKQFYILIDKEY--KFETLCDLYESV 264

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   II+CN ++ V  L   ++++ F+V ++HG++ Q+ R  I+  F+ G+ ++++ +
Sbjct: 265 -TITQAIIYCNTRRKVDYLTLKMQEKDFTVSSMHGDMGQKERDLIMREFRSGSTRVLITT 323

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   +NYIHRIGR+GR GR G A   V  +D+  + +IE 
Sbjct: 324 DLLARGIDVQQVSLVINYDLPMSPDNYIHRIGRSGRFGRKGVAINFVTHQDMDTMKSIEN 383

Query: 363 LIEKKVDWLNGDLS 376
               +++ +  D++
Sbjct: 384 YYNTQIEEMPADIA 397


>gi|295101481|emb|CBK99026.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
           L2-6]
          Length = 395

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 126/366 (34%), Positives = 210/366 (57%), Gaps = 11/366 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M +++L  S  +  AV   G+ + T +Q KTIP++L   DV   A TGTGKT +F +P  
Sbjct: 1   MLYSELQCSEAIHKAVERMGFAEMTEVQEKTIPVMLAGRDVIAKAPTGTGKTCAFGIP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY---NLTVALLIGGIPFEAQNK 117
            + E     ++ P+ +IL PTRELA Q+A+  E  G  Y    + V  + GG   E Q K
Sbjct: 59  -VAEHIDPALKAPQAVILAPTRELAQQIAE--ELTGLTYFMPEVQVVCVYGGANMEKQAK 115

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G  +++ TPGR++DH+    + ++++  +V+DEAD ML+MGF   +++I  L+   
Sbjct: 116 RLAEGCQIVVATPGRLMDHYKHHNIDLDHVTQVVLDEADEMLNMGFYKDVKHIIGLMKAR 175

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +   +FSAT++ E+  +   + ++ + I V     +   I    + T  +   K + L Q
Sbjct: 176 KSLSMFSATISREVMDIGWMYQKDAEEITVQPKEESQPKITQYMLETSGR--NKLSDLAQ 233

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  +   K  ++FC+ K N   L + L + GFSV  +HG++ Q  R +I+ NF++G + 
Sbjct: 234 IIIGEG-YKRVMVFCDTKFNTAALANQLARLGFSVDCLHGDLSQNERNRIMQNFRDGKLN 292

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ DV  V N+DVP   E+Y HRIGRTGRA + G ++     E+ K +
Sbjct: 293 VLVATDVAARGIDVSDVDAVINYDVPGDNEHYTHRIGRTGRAKKEGVSYLFYVPEEKKRV 352

Query: 358 DAIEKL 363
             + +L
Sbjct: 353 QELLRL 358


>gi|289422183|ref|ZP_06424040.1| DEAD/DEAH box helicase [Peptostreptococcus anaerobius 653-L]
 gi|289157409|gb|EFD06017.1| DEAD/DEAH box helicase [Peptostreptococcus anaerobius 653-L]
          Length = 366

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 216/376 (57%), Gaps = 20/376 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F D  +   +V A+   G  +PT +Q+++IPL++ + D+   + TGTGKT SF+LP++
Sbjct: 1   MNFKDFNIDENLVQALAKIGIKEPTRVQLESIPLIIDKRDLMIKSNTGTGKTLSFLLPLI 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQV----ADNFEKYG-KNYNLTVALL--IGGIPF 112
             IL+K      +   LIL PTREL  Q+     D     G +N   TV +L   GG   
Sbjct: 61  DKILKKD-----IDSILILAPTRELVLQINDMAVDIISHIGDENIKNTVNILPIYGGKDI 115

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           +AQ  KL+   ++L+ TPGR+LDH NR  + ++  + +VIDEAD+ML MGF   I  I S
Sbjct: 116 KAQINKLKNSINILVATPGRLLDHINRNTISVSKFDSIVIDEADQMLLMGFKNEIDLIFS 175

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT--YAQYSK 230
            +     T+  SAT+  +++K+   +  NP  + +   +   + IE  FV T    ++  
Sbjct: 176 KIKKYDHTIFLSATLDSKVKKLVYRYSNNPIEVNIEEDTHVPDLIEQEFVFTNDRQKFED 235

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            C+   ++   Q  M   I+FC  K  V NL   L ++ ++   IH +I Q  R +I+ +
Sbjct: 236 FCS---KIDHDQPFM--AIVFCRTKARVDNLEEKLGQRKYNCKKIHSDISQAKRERIMKD 290

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F++  IQ ++++DL+ARG+D+  + H++N+D P R E+YIHRIGR GR G+ GK+ + V 
Sbjct: 291 FRDLKIQFLISTDLSARGIDVNGISHIYNYDFPERPEDYIHRIGRAGRIGKDGKSCSFVT 350

Query: 351 KEDIKHIDAIEKLIEK 366
           ++++   D ++ ++EK
Sbjct: 351 EKNMSVYDEVKAILEK 366


>gi|315090516|gb|EFT62492.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA4]
          Length = 491

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 190/347 (54%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LG+  ++V A+   G   P  IQI  IP  +   DV G A TG+GKT +F +P+L+ 
Sbjct: 22  FSALGVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSR 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L         PR LIL PTRELA Q+AD       +  L+  L+ GG+ +  Q K  +RG
Sbjct: 82  LSATPREDNRPRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFKRG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR++D    G   ++ + + V+DEAD M ++GF+  + +I   +P   Q LL
Sbjct: 142 VDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRLL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + K+   ++  P   EV+    +  T+ H   A   +  +K  L+ ++    
Sbjct: 202 FSATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHH--AFQIKPHEKVGLMCEIANRS 259

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
               + I+F   ++    +   L + G    A+HG + Q +R ++L+ FK+G++ ++VA+
Sbjct: 260 ---GHTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVAT 316

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+ DV  V   D P   ++Y+HR GRT RAG  G   +LV
Sbjct: 317 DVAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLV 363


>gi|224371289|ref|YP_002605453.1| RecQ2 [Desulfobacterium autotrophicum HRM2]
 gi|223694006|gb|ACN17289.1| RecQ2 [Desulfobacterium autotrophicum HRM2]
          Length = 537

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 138/387 (35%), Positives = 217/387 (56%), Gaps = 14/387 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L   ++ A+ D  +    P+Q + +P  L   D    AQTGTGK+A+F++ ++  
Sbjct: 98  FHDLDLPLGLMHAISDENFQYCMPVQAEVLPHTLMGKDATAKAQTGTGKSAAFLVTIIAR 157

Query: 63  LEKGRARVR----MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L K   R +     PR LI+EPTREL  Q+  + +       L    + GG+ ++ Q  +
Sbjct: 158 LMKNPTRGKREKGTPRALIIEPTRELVLQIEKDAKALTLYTPLRTVSVFGGMDYKRQQDQ 217

Query: 119 LERG-ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           L     D++  TPGR++D F R KL+ +  IEILVIDEADR+LDMGFIP ++NI    P 
Sbjct: 218 LASAHVDIIAATPGRLMD-FMRQKLINLGKIEILVIDEADRLLDMGFIPDMRNIIYNTPH 276

Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCA 233
              RQTL FSAT+  E+ +++  +  +P  +E++   + A++I +  F+ T  Q   K  
Sbjct: 277 KKERQTLFFSATLAPEILRMANQWTVDPAVVEIDPDKTAADSINQKVFIVTEDQ---KFP 333

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  L+ S + ++  I+F N +     +   L +   S   + G + Q+ R++ L +F+ 
Sbjct: 334 LLYNLI-SGEKLERVILFVNMRSTTRRIAQRLVQFDISSEILSGEVSQKQRIRTLDDFRN 392

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++++VA+D+AARGL I  V HV N+D+P   E+YIHRIGRTGRAG  G + +   +  
Sbjct: 393 GKVRVLVATDVAARGLHIEGVSHVINYDLPQDPEHYIHRIGRTGRAGAEGISVSFADEMS 452

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNP 380
              I  IE ++  K++    D + L P
Sbjct: 453 SFQIPDIEAVLGNKLECEYPDDAMLAP 479


>gi|153212167|ref|ZP_01947962.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae 1587]
 gi|124116719|gb|EAY35539.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae 1587]
          Length = 406

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 201/366 (54%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A L     +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 1   MSFSSLALSADLIQA-LPKEITQPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV+D     G    L    L GG+    Q   L 
Sbjct: 60  ERLKTSPEQ----QALVLVPTRELAMQVSDVLTHVGTPLGLNTLCLCGGVDKAEQQNALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 116 ENPNILVATTGRLFDLTQSG-LSLNRVTTLVLDEADRLLDMGFWPQVQALASQTASVRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 175 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 233

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N  +L   L+K G    A+HG+  Q  R   L+ FK G+ Q+++
Sbjct: 234 HQ--WPQVLVFIGAKENADSLTKKLKKAGVVATALHGDKSQSEREAALAEFKNGSTQVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIAVSLVCHGEMDALNAI 351

Query: 361 EKLIEK 366
             L ++
Sbjct: 352 RTLTQR 357


>gi|15218071|ref|NP_173516.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|108861895|sp|Q8H0U8|RH42_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 42
 gi|4836896|gb|AAD30599.1|AC007369_9 Similar to RNA helicases [Arabidopsis thaliana]
 gi|332191919|gb|AEE30040.1| DEAD-box ATP-dependent RNA helicase 42 [Arabidopsis thaliana]
          Length = 1166

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 131/378 (34%), Positives = 208/378 (55%), Gaps = 9/378 (2%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           GL+ K++  +    Y KP PIQ + +P+++   D  G+A+TG+GKT  FVLPML  + K 
Sbjct: 535 GLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHI-KD 593

Query: 67  RARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
           +  V     P  L++ PTREL  Q+  +  K+ K   +    + GG     Q  +L+RG 
Sbjct: 594 QPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGT 653

Query: 124 DVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           ++++CTPGR++D    + GK+  +  +  LV+DEADRM DMGF P I  I   +   RQT
Sbjct: 654 EIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQT 713

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT   +++ ++   L  P  I+V   S   + I    V    +  +   LL+ L +
Sbjct: 714 VLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRPESDRFLRLLELLGE 772

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  K  ++F   ++    L   + K  +   ++HG  DQ  R   +S+FK     L++
Sbjct: 773 WSEKGKI-LVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLI 831

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+ +AARGLD+ ++  V NFD PN  E+Y+HR+GRTGRAGR G A T ++++D K+   +
Sbjct: 832 ATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDL 891

Query: 361 EKLIEKKVDWLNGDLSSL 378
            K +E     +  DL +L
Sbjct: 892 VKALELSEQPVPDDLKAL 909


>gi|71033289|ref|XP_766286.1| eukaryotic translation initiation factor 4A [Theileria parva strain
           Muguga]
 gi|68353243|gb|EAN34003.1| eukaryotic translation initiation factor 4A, putative [Theileria
           parva]
          Length = 394

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 205/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL  +++  +   G+ KP+ +Q + I  +L+  DV   +Q+GTGKT  F L  L  
Sbjct: 23  FEDLGLKEEILKGIFAYGFDKPSAVQQRAIKPILEGRDVIIQSQSGTGKTCVFCLGALQT 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +    + VR  + L+L PTRELA Q        G   N+ V   IGG       K LE G
Sbjct: 83  V---NSNVRETQVLLLSPTRELAEQSQKVCLALGDYCNIEVHCCIGGKKVSDDIKALESG 139

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+        L   NI+ L++DEAD ML+ GF   + ++   +P T Q +L
Sbjct: 140 VQIVSGTPGRVNHMITDRHLNTRNIKQLILDEADEMLNRGFKEQVYSVYRYLPPTIQVVL 199

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++ +++  F+ NP ++ V     T E I+  F++   +   +   C L + L+
Sbjct: 200 VSATLPHDVIEITNKFMNNPFKVLVKRDELTLEGIKQFFISVEKEQWKFDTLCDLYESLI 259

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IFCN K+ V  L   ++   F VC +HG + Q+ R  I+  F++G  +++
Sbjct: 260 ITQ-----AVIFCNTKEKVDWLAKKMKDGNFEVCKMHGEMSQKERNDIMQRFRKGESRVL 314

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++DL  RGLD+  V  V N+D+PN  E+YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 315 ISTDLWGRGLDVQQVSLVVNYDLPNSRESYIHRIGRSGRYGRKGVAINFVKDDDIRILRD 374

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  ++S L
Sbjct: 375 IEQYYSTQIDEMPMNISEL 393


>gi|328856691|gb|EGG05811.1| hypothetical protein MELLADRAFT_43753 [Melampsora larici-populina
           98AG31]
          Length = 573

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 128/350 (36%), Positives = 197/350 (56%), Gaps = 19/350 (5%)

Query: 24  PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL----EKGRARVRMPRTLILE 79
           PTPIQ +TIPL L   D+   + TG+GKT  +++P+   L    +KG  + R+   +IL 
Sbjct: 6   PTPIQRQTIPLALLGKDLVCSSMTGSGKTLGYLVPIFERLMWRDKKGGGKTRV---MILT 62

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF-N 138
           PTRELA QV    +   +  +LT +L +GG+    Q  +L    ++++ TPGR++DH  N
Sbjct: 63  PTRELAVQVYQVGKSLARYTDLTFSLCVGGMNLRTQEAELRERPEIVVGTPGRVIDHVRN 122

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
                ++ +EILVIDEADR+L+ GF   ++ I S  P +RQT+LFSAT+++ +  ++   
Sbjct: 123 TRGFSLDTLEILVIDEADRILEEGFRDELEEIISNCPRSRQTMLFSATVSESVADLARLS 182

Query: 199 LQNPKRIEVNTPSSTAETIEHCFV-----------ATYAQYSKKCALLQQLLQSQDTMKN 247
           L+ P RI+++ P STA  +   F+           A  A   ++  L+     S  +   
Sbjct: 183 LEKPIRIKIDPPKSTATGLTQEFLRVRDDQLLKKGAGVADIQREAILVTLCKASSFSKGR 242

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            IIF   K     +  +    G     +HGN+ Q  RM  L +FK+G +  ++A+DLA+R
Sbjct: 243 TIIFFRSKVGAHRMKVTFSLFGLKAAELHGNLTQEQRMSSLQDFKDGKVSYLLATDLASR 302

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           GLDI  V  V N++ PN+ + Y+HRIGRT RAG+ G A TLV + D K +
Sbjct: 303 GLDIKGVERVINYETPNQYDVYLHRIGRTARAGKKGSALTLVGESDRKLV 352


>gi|320170440|gb|EFW47339.1| DEAD box RNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 662

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 133/352 (37%), Positives = 192/352 (54%), Gaps = 14/352 (3%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA-----RVRMP 73
           AG+  PTPIQ +  P+ L   D+ GIA+TG+GKT +F LP +  L    A       R P
Sbjct: 253 AGFASPTPIQSQCWPISLAGKDLIGIAKTGSGKTLAFALPSIIHLRDQEALGKSSNQRGP 312

Query: 74  RTLILEPTRELAAQVAD---NFEKYGKNYNLTVAL----LIGGIPFEAQNKKLERGADVL 126
             L+L PTRELA Q A+   N   +    + +VAL    + GG+P + Q  +L+ G  V+
Sbjct: 313 VVLVLCPTRELAMQTAEVYANVASHTGKSSSSVALKTVCIFGGVPKKQQLDQLKSGIHVI 372

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+ D  + G + +  +  +++DEADRMLD+GF   I++I   V   RQTL+FSAT
Sbjct: 373 VATPGRLRDFIDSGDISLQRVSCVILDEADRMLDLGFEKDIRDILGRVTKDRQTLMFSAT 432

Query: 187 MTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
               ++ +   FL  +  R+ +      A       V     ++K   LL  L +   + 
Sbjct: 433 WPSAIEAIGREFLAPDTVRVTIGGDELVANDAVTQHVEVLEPFAKDARLLDLLQKHHSSR 492

Query: 246 KNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
           KN  IIF   K+    +   L ++G+   AIHG+  Q  R   L  FK G + L++A+D+
Sbjct: 493 KNKVIIFVLYKQEAPRVEQMLLRKGWKSIAIHGDRSQADRTAALQAFKTGEVPLLIATDV 552

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           AARGLDIP+V +V N+  P   E+Y+HRIGRTGRAG+ G AFT     D  H
Sbjct: 553 AARGLDIPNVEYVINYTFPLTIEDYVHRIGRTGRAGKTGTAFTFFTVNDKSH 604


>gi|15234166|ref|NP_195063.1| DEAD-box protein abstrakt, putative [Arabidopsis thaliana]
 gi|75337897|sp|Q9SZB4|RH43_ARATH RecName: Full=Putative DEAD-box ATP-dependent RNA helicase 43
 gi|4490304|emb|CAB38795.1| putative protein [Arabidopsis thaliana]
 gi|7270285|emb|CAB80054.1| putative protein [Arabidopsis thaliana]
 gi|332660816|gb|AEE86216.1| putative DEAD-box ATP-dependent RNA helicase 43 [Arabidopsis
           thaliana]
          Length = 542

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 140/399 (35%), Positives = 224/399 (56%), Gaps = 20/399 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     ++  + D G + PTPIQ++ +P+VL   D+ GIA TG+GKT  FVLPM+ 
Sbjct: 98  NFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMII 157

Query: 62  ILEKGR-----ARVRMPRTLILEPTRELAAQVADNFEKYGKNY------NLTVALLIGGI 110
           +  +       A    P  L++ P+RELA Q  D  E++  +        L   L IGG+
Sbjct: 158 LALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGV 217

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q   +++G  +++ TPGR+ D   + K+ ++   +L +DEADR++D+GF   I+++
Sbjct: 218 DMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHV 277

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q  + + L  P  + VN   + A  ++   V    +Y K
Sbjct: 278 FDHFKSQRQTLLFSATMPAKIQIFATSALVKP--VTVNVGRAGAANLD---VIQEVEYVK 332

Query: 231 KCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A +  LL+  Q T    +IFC  K +V ++   L  +G    AIHG  DQ  R   +S
Sbjct: 333 QEAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAIS 392

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T +
Sbjct: 393 LFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFI 452

Query: 350 AK--EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
            K   +I  +D ++ L+++    +   L+ LN P+E+ +
Sbjct: 453 NKNQSEITLLD-LKHLLQEAKQRIPPVLAELNGPMEETE 490


>gi|50843247|ref|YP_056474.1| ATP-dependent RNA helicase [Propionibacterium acnes KPA171202]
 gi|50840849|gb|AAT83516.1| ATP-dependent RNA helicase [Propionibacterium acnes KPA171202]
          Length = 700

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 190/347 (54%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LG+  ++V A+   G   P  IQI  IP  +   DV G A TG+GKT +F +P+L+ 
Sbjct: 231 FSALGVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSR 290

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L         PR LIL PTRELA Q+AD       +  L+  L+ GG+ +  Q K  +RG
Sbjct: 291 LSATPREDNRPRALILSPTRELAMQIADALSSLASSMGLSTILIAGGMSYGPQTKAFKRG 350

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR++D    G   ++ + + V+DEAD M ++GF+  + +I   +P   Q LL
Sbjct: 351 VDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRLL 410

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + K+   ++  P   EV+    +  T+ H   A   +  +K  L+ ++    
Sbjct: 411 FSATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHH--AFQIKPHEKVGLMCEIANRS 468

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
               + I+F   ++    +   L + G    A+HG + Q +R ++L+ FK+G++ ++VA+
Sbjct: 469 ---GHTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVAT 525

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+ DV  V   D P   ++Y+HR GRT RAG  G   +LV
Sbjct: 526 DVAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLV 572


>gi|302414752|ref|XP_003005208.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Verticillium
           albo-atrum VaMs.102]
 gi|261356277|gb|EEY18705.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Verticillium
           albo-atrum VaMs.102]
          Length = 1145

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 130/371 (35%), Positives = 208/371 (56%), Gaps = 8/371 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A  GL+ + +  + D GY +PT IQ++ +P ++   DV G+A+TG+GKT +F+LPM   
Sbjct: 521 WAQCGLTRQTLDILADLGYERPTSIQMQALPCLMSGRDVIGVAKTGSGKTMAFLLPMFRH 580

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + K +  +R    P  LI+ PTRELA Q+  + + + K   +      GG P + Q   L
Sbjct: 581 I-KDQKPIRGDDGPIGLIMTPTRELAVQIHRDCKPFLKPMGMRAVCAYGGAPIKDQIADL 639

Query: 120 ERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D    N+G++  +  +  +V+DEADRM DMGF P +  I + +  
Sbjct: 640 KRGAEIVVCTPGRMIDLLGANQGRVTNLRRVSYVVLDEADRMFDMGFEPQVMKIFANMRP 699

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALL 235
            RQT+LFSATM   +  +++  L++P  + V   S  A E  +   V            L
Sbjct: 700 DRQTILFSATMPRIIDSLTKKVLKSPVEVTVGGRSVVAPEITQKVEVLDEGDKFFHLLGL 759

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L  +D     +IF  +++   +L   L  +G+   +IHG  DQ  R   +S+FK+G 
Sbjct: 760 LGELYEEDEDARSLIFVERQEKADDLLKELMTKGYPCMSIHGGKDQVDRDSTISDFKKGI 819

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T +  E   
Sbjct: 820 VPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNKGTAVTYITSEQEN 879

Query: 356 HIDAIEKLIEK 366
               I K +E+
Sbjct: 880 CAPGIAKALEQ 890


>gi|330443505|ref|NP_010253.2| Dbp10p [Saccharomyces cerevisiae S288c]
 gi|329138871|tpg|DAA11821.2| TPA: Dbp10p [Saccharomyces cerevisiae S288c]
          Length = 995

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 134/418 (32%), Positives = 218/418 (52%), Gaps = 53/418 (12%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GLS  V+  +   G+ +PTPIQ KTIPL+LQ  D+ G+A+TG+GKTA+F+LPM+  
Sbjct: 139 FPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEK 198

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    ++   R +IL P+RELA Q  + F+ + +   L   LL GG   E Q   +   
Sbjct: 199 LKSHSGKI-GARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMTN 257

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV+I TPGR L       L + ++E +V DEADR+ +MGF   +  + + +P TRQTLL
Sbjct: 258 PDVIIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLASLPTTRQTLL 317

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-------------------- 222
           FSAT+ + L    +  L NP  + ++  +  +E +E  F+                    
Sbjct: 318 FSATLPNSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNADREANLLYILQEIIK 377

Query: 223 ---ATYAQYSK--------------------------KCALLQQLLQSQDTM---KNGII 250
              AT  Q  K                          K    +Q + + + +   K  I+
Sbjct: 378 IPLATSEQLQKLQNSNNEADSDSDDENDRQKKRRNFKKEKFRKQKMPAANELPSEKATIL 437

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F   + +V  +   L   G+ +  I+G +DQ +R + L NF+ G   ++V +D+AARG+D
Sbjct: 438 FVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLYNFRAGLTSILVVTDVAARGVD 497

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           IP + +V N+ +P  ++ ++HR+GRT RAG  G A+++VA+ ++ ++  +E  + KK+
Sbjct: 498 IPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLLDLELFLGKKI 555


>gi|296234835|ref|XP_002762632.1| PREDICTED: ATP-dependent RNA helicase DDX3Y [Callithrix jacchus]
          Length = 656

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 138/393 (35%), Positives = 218/393 (55%), Gaps = 25/393 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D+ +   ++  +    Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+
Sbjct: 177 NFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILS 236

Query: 62  ILE-----------KGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
            +            KG  R     + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 237 QMYTDGPGEALKAVKGNGRYGHSKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 296

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q   LE G  +L+ TPGR++D   R K+ ++  + LV+DEADRMLDMGF P 
Sbjct: 297 YGGANIGQQIGDLEHGCHLLVATPGRLVDMMERRKIALDFCKYLVLDEADRMLDMGFEPQ 356

Query: 167 IQNITS--LVP--FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I     +P    R T++FSAT   ++Q ++ +FL     + V    ST+E I    V
Sbjct: 357 IRRIVEQDCMPPKGVRHTMMFSATFPKKIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 416

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             + +   K + L  LL +       ++F   KK V +L   L  +G++  +IHG+  QR
Sbjct: 417 --WVEDLDKRSFLLDLLGATGRDSLILVFVVTKKEVDSLEEFLYHEGYACTSIHGDRSQR 474

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
           +R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGRAG  
Sbjct: 475 AREEALRQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRAGNL 534

Query: 343 GKAFTLVAKEDIK-HIDAIEKLIEKKVD---WL 371
           G A +   ++++    D ++ L+E K +   WL
Sbjct: 535 GLATSFFNEKNVNIAKDLLDLLVEAKQEVPSWL 567


>gi|301119687|ref|XP_002907571.1| ATP-dependent RNA helicase DBP2, putative [Phytophthora infestans
           T30-4]
 gi|262106083|gb|EEY64135.1| ATP-dependent RNA helicase DBP2, putative [Phytophthora infestans
           T30-4]
          Length = 546

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 136/394 (34%), Positives = 198/394 (50%), Gaps = 49/394 (12%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           + F +      V+  V+  G+ KPTPIQ +  P+ L   D+ GI+ TG+GKT +F+LP  
Sbjct: 101 LSFEEASFPEYVLEEVVRLGFDKPTPIQCQGWPMALSGRDMVGISATGSGKTLAFLLPAI 160

Query: 60  ----------------LTILEKGRARVRM---------------------------PRTL 76
                           L I   G +R                              P  L
Sbjct: 161 VHINAQVRILQSLFTKLCIAHDGCSRSDKKKQHANTSNPSALACVCFLPYLQPGDGPIVL 220

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           ++ PTRELA Q+     K+G +  +    + GG+P   Q   L RG ++ ICTPGR++D 
Sbjct: 221 MIAPTRELAVQIQAECNKFGASSKIKNTCVYGGVPKGGQIADLRRGVEICICTPGRMIDM 280

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
            + GK  +  +  LV+DEADRMLDMGF P ++ I S +   RQTL++SAT   E+  ++ 
Sbjct: 281 LSMGKTNLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQTLMWSATWPKEIVALAN 340

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG--IIFCNQ 254
           +FL +  ++ V +   TA       V     + K  +L   L   +D  + G  IIFC  
Sbjct: 341 DFLTDFIQVTVGSLDLTANKRIKQIVEVMDDHQKYSSLQDHL---RDIYEGGRIIIFCET 397

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K+    L  +L    +   AIHGN  Q  R  +L  FK+G  Q++VA+D+A+RGLDI D+
Sbjct: 398 KRGADELSRNLRNTRYICKAIHGNKSQEERDYVLREFKDGRTQILVATDVASRGLDIKDI 457

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +V NFD+P   E+YIHRIGRT RAG  G + + 
Sbjct: 458 RYVVNFDMPKNIEDYIHRIGRTARAGNKGTSISF 491


>gi|325287731|ref|YP_004263521.1| DEAD/DEAH box helicase domain-containing protein [Cellulophaga
           lytica DSM 7489]
 gi|324323185|gb|ADY30650.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
           7489]
          Length = 445

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 124/362 (34%), Positives = 220/362 (60%), Gaps = 10/362 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61
           F+ LG+S  ++ ++ +     PT IQ+K+IP++L+ + D  G+A+TGTGKTA+F LP++ 
Sbjct: 5   FSKLGVSTPLLKSLAELEITTPTEIQVKSIPVLLEANKDFVGLAKTGTGKTAAFGLPLIQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           ++    A ++    +I+ PTREL  Q+  N   +  +   +++A + GG P + Q ++L+
Sbjct: 65  LINTESANIQ---AVIVVPTRELGQQIYSNLVSFASHMPAVSIASVCGGTPIKPQIERLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR++D   R  + +N+ + LV+DEAD M+       +  I + +P  ++T
Sbjct: 122 ENTHIVIATPGRLIDLLKRNAITINSAKYLVLDEADEMV-TSLKDGLDTIVAALPKDKRT 180

Query: 181 LLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LF+ATM   ++++ +N+L ++  ++ VN  +    +I+H +V    +  +K  +L   L
Sbjct: 181 ILFTATMPGTIKQIVQNYLSKHVTQVSVNMETVGNTSIDHQYVV--VEPIEKLEVLMHFL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S++  + GIIFC  K  V  L  +L    FS  A+HG++ Q  R +I+  F+EG I+++
Sbjct: 239 NSKEGQR-GIIFCKTKAAVNKLAKNLAINKFSSGALHGSLTQPIRDRIMGQFREGHIKIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARGLD+ ++ +V N+ +P+  E Y+HR GRT RAG  G + T++ KE+ + I  
Sbjct: 298 VATDLAARGLDVKEITYVVNYHLPDVYETYVHRSGRTARAGADGFSLTILQKEEEQDIAE 357

Query: 360 IE 361
            E
Sbjct: 358 FE 359


>gi|315501146|ref|YP_004080033.1| dead/deah box helicase domain protein [Micromonospora sp. L5]
 gi|315407765|gb|ADU05882.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5]
          Length = 629

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 124/352 (35%), Positives = 194/352 (55%), Gaps = 10/352 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DFA LGL  +VV  +   G   P  IQ  T+P  L   DV G  QTG+GKT +F LP++
Sbjct: 20  VDFASLGLPRQVVEVLARQGITTPFEIQRATLPDSLAGRDVLGRGQTGSGKTLAFGLPVI 79

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L ++ RAR   PR L+L PTRELA QV D     GK   + +   +GG+P++ Q   L
Sbjct: 80  ARLADRNRARPLHPRALVLVPTRELAMQVNDALMPLGKAVGVFLKTAVGGVPYDRQIDAL 139

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG ++++ TPGR+ D   RG   ++++EI V+DEAD+M DMGF+P +  + +  P   Q
Sbjct: 140 RRGVEIVVATPGRLGDLIERGVCRLDDVEITVLDEADQMADMGFLPEVTQLLAKTPADAQ 199

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQ 237
            LLFSAT+ +++  + + F+ +P        ++   T++H    +  + +++   ++  +
Sbjct: 200 RLLFSATLDNDVDTLVKRFMTDPVTHSTAPATAAVSTMDHHLLLIPPHDKFAVAASIAAR 259

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             ++       ++F   +  V  L   L   G     +HG   QR R K L+ F+EG   
Sbjct: 260 EGRT-------MLFARTQLGVDRLVEQLAAVGVRAGGLHGGKTQRMRTKTLAEFREGRTP 312

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++VA+D+AARG+ +  V  V + D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 313 VLVATDVAARGIHVDGVSLVLHVDPPKDPKDYLHRAGRTARAGESGAVATLV 364


>gi|86133600|ref|ZP_01052182.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
 gi|85820463|gb|EAQ41610.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
          Length = 373

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 128/368 (34%), Positives = 213/368 (57%), Gaps = 17/368 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61
           FA LG+    + ++ + G  KPT IQ K IP++L+   D  G+AQTGTGKTA+F LP+L 
Sbjct: 4   FAGLGIRKDYIKSIKEIGITKPTDIQEKAIPVLLKSPTDFIGLAQTGTGKTAAFGLPVLH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL--LIGGIPFEAQNKKL 119
            ++     ++    LIL PTREL  Q+     K+ K  +  + L  + GG   + Q   L
Sbjct: 64  HIDANSDHIQ---ALILSPTRELVQQIKKQLFKFTKYVDDRIFLEAVFGGEKIDRQMNNL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-- 177
           +R   ++I TPGR++D   RG + +++++ +++DEAD ML MGF    Q++  ++ FT  
Sbjct: 121 KRTTHIVIATPGRLIDLIERGAVDISHVKTVILDEADEMLSMGFK---QDLNRILKFTTK 177

Query: 178 --RQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
             R+T LFSATM DE++++ + ++  N  RIE+N  +     I H F  T  +  +K A 
Sbjct: 178 SDRKTWLFSATMPDEIKRIVKTYMDANAPRIEINKNTLVNANIRHQFAKTTLK--EKVAD 235

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   L+ +   + GIIFC  K    NL   L  +GFS  A+ G++ Q+ R K++  FK  
Sbjct: 236 IVTFLEKRQAQR-GIIFCRTKAGAQNLAKQLVDEGFSAAALEGDMQQKERDKVMRAFKNE 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           ++Q ++++D++ARG+D+ ++  V +  +P + E Y HR GRT RAG+ G +   +   ++
Sbjct: 295 SLQYLISTDVSARGIDVRELEFVIHHQLPEQLEYYTHRSGRTARAGKTGTSLAFILPSEL 354

Query: 355 KHIDAIEK 362
           + I  ++K
Sbjct: 355 EKIHQLQK 362


>gi|291276231|gb|ADD91316.1| vasa [Seriola quinqueradiata]
          Length = 650

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 131/359 (36%), Positives = 208/359 (57%), Gaps = 14/359 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 215 MTFAEAALCESLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 274

Query: 61  T-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G A      ++ P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 275 QQLMADGVAASQFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGH 334

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q +++ RG +VL  T GR+LD   RGK+ ++ +  LV+DEADRMLDMGF P ++ +    
Sbjct: 335 QIREICRGCNVLCGTLGRLLDVIGRGKVGLHKLRYLVLDEADRMLDMGFEPDMRRLVGSP 394

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +++Q+++ +FL+     + V         +E  F+    ++S
Sbjct: 395 GMPSKEKRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQKFIEV-TKFS 453

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL  +L++  T +  ++F   K+    +   L ++     +IHG+ +QR R + L+
Sbjct: 454 KREQLLD-ILKTTGTERT-MVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALA 511

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +F+ G   ++VA+ +AARGLDIPDV HV NFD+PN  + Y+HRIGRTGR G  G+A + 
Sbjct: 512 DFRSGRCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSF 570


>gi|119775581|ref|YP_928321.1| DEAD-box ATP dependent DNA helicase [Shewanella amazonensis SB2B]
 gi|119768081|gb|ABM00652.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis
           SB2B]
          Length = 447

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 127/353 (35%), Positives = 194/353 (54%), Gaps = 7/353 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++  ++  GY  PT IQ ++IP++L   D+  +AQTG+GKTA+F LP+L
Sbjct: 1   MSFDSLGLAAPLLQTLIQCGYRTPTEIQAQSIPVLLSGRDLIAVAQTGSGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     R  + + L+L PTRELA QVAD F +Y     LT   + GG+    Q + L 
Sbjct: 61  KQLSDKGLRGGI-QALVLVPTRELAVQVADAFTRYSAGLGLTTLAVYGGVNIRPQRQALA 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPFTRQ 179
            G D+L+ TPGR+LD   +  L + ++  LV+DEADRMLDMGF P I+ I   L P   Q
Sbjct: 120 AGVDILVATPGRLLDLTGQFGLSLASVGTLVLDEADRMLDMGFAPDIEKIRRQLGPH--Q 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           + +FSA+     ++++E +L N   +       T    +   +  +     + A     L
Sbjct: 178 SAMFSASFAQRERELAERWLSNAVSLAAK---DTGRIPQQLALEVFMLDKPRWAEFVAEL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F + ++    L   L   G    A HG   Q +R + L  FK G ++L+
Sbjct: 235 VGKRNWRQALVFVSSREESNTLVAELALDGLQAAAFHGEKTQGARRRGLDEFKSGKLRLL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           VA+D+AARGLDI D+  V +  +P+  E+ IHR+GR+ RAGR G A  +++ E
Sbjct: 295 VATDVAARGLDIEDLPVVISLGLPHGEEDLIHRLGRSARAGREGLAVIVLSPE 347


>gi|146419877|ref|XP_001485898.1| hypothetical protein PGUG_01569 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 397

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 121/379 (31%), Positives = 208/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P+++  + + G+  P+ IQ + I  +++  D    AQ+GTGKTA+F + +L++
Sbjct: 26  FESMNLKPELLKGIYNYGFEAPSAIQSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILSL 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    + +  + L+L PTRELA Q+ +  E  G   N+     IGG       KKL++G
Sbjct: 86  ID---TKSKDCQALVLSPTRELAQQIENVIEHLGDYMNVRSHACIGGTQVGEDVKKLQQG 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+LD   R  ++  ++++LV+DEAD +L  GF   I  I   +P   Q ++
Sbjct: 143 QHIISGTPGRVLDMIKRRNIMPRHVKMLVLDEADELLTKGFKEQIYEIYKTLPAGAQVVV 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+T E+ +++  F  +P +I V     T + I+  ++    +   +   C L   L 
Sbjct: 203 VSATLTPEVLEMTNKFTSDPVKILVKRDDVTLKGIKQYYIQCEKEDWKFDTLCDLYDNL- 261

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K  V  L   + K  F+V A+HG++ Q  R  I+  F+ G+ +++
Sbjct: 262 ----TITQAVIFCNTKAKVNWLAGQMRKSNFTVAAMHGDMKQEDRDSIMKEFRSGSTRVL 317

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENY+HRIGR+GR GR G A  L+  +D   +  
Sbjct: 318 ISTDVWARGIDVQQVSLVINYDLPLDKENYVHRIGRSGRFGRKGTAINLLTSQDKDELKL 377

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           ++     K+  +  DLS +
Sbjct: 378 LQHYYSTKIREVPADLSKI 396


>gi|111024197|ref|YP_707169.1| ATP-dependent RNA helicase [Rhodococcus jostii RHA1]
 gi|110823727|gb|ABG99011.1| possible ATP-dependent RNA helicase [Rhodococcus jostii RHA1]
          Length = 632

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 130/349 (37%), Positives = 191/349 (54%), Gaps = 7/349 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++GL   +V A+       P+PIQ   +P  L   +V G AQTG+GKT +F LPMLT 
Sbjct: 28  FAEIGLPAPLVQALARNSITVPSPIQALAVPDALAGTNVLGRAQTGSGKTLAFGLPMLTR 87

Query: 63  LEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L +   R   + PR L+L PTRELA QV D+   Y     LTV   +GG PF  Q  +L 
Sbjct: 88  LSRHEDRPAPKRPRALVLVPTRELAFQVVDSLNSYAGAMGLTVRPAVGGTPFSKQVDQLR 147

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+ DH  +G  ++++IEI  +DEAD+M DMGF+P ++ I        Q 
Sbjct: 148 RGVDILVATPGRLNDHLRQGTCILDSIEITALDEADQMADMGFLPEVRAILGETRADGQR 207

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  E+Q +   FL +  +       ++ +T+EH +V    +  K   L +  + 
Sbjct: 208 LLFSATLDREVQSLVRQFLPDHVQHSTEDGRASVDTMEH-YVLLVDRGQKDNVLAE--IG 264

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++D     I+F   K     +   L   G +  A+HG   Q  R ++L  FK G   ++V
Sbjct: 265 ARDGRT--IMFARTKLGCEGITDRLRAVGIAAEALHGGKAQNQRTRVLERFKNGRTPVLV 322

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           A+D+AARG+ +  +  V + D P   ++Y+HR GRT RAG  G    +V
Sbjct: 323 ATDVAARGIHVDGIDLVVHVDPPADHKDYLHRAGRTARAGEKGTVVAIV 371


>gi|314964947|gb|EFT09046.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2]
 gi|315093752|gb|EFT65728.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1]
          Length = 491

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 190/347 (54%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LG+  ++V A+   G   P  IQI  IP  +   DV G A TG+GKT +F +P+L+ 
Sbjct: 22  FSALGVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSR 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L         PR LIL PTRELA Q+AD       +  L+  L+ GG+ +  Q K  +RG
Sbjct: 82  LSATPREDNRPRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFKRG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR++D    G   ++ + + V+DEAD M ++GF+  + +I   +P   Q LL
Sbjct: 142 VDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRLL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + K+   ++  P   EV+    +  T+ H   A   +  +K  L+ ++    
Sbjct: 202 FSATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHH--AFQIKPHEKVGLMCEIANRS 259

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
               + I+F   ++    +   L + G    A+HG + Q +R ++L+ FK+G++ ++VA+
Sbjct: 260 ---GHTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLTAFKDGSLPVLVAT 316

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+ DV  V   D P   ++Y+HR GRT RAG  G   +LV
Sbjct: 317 DVAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLV 363


>gi|314924108|gb|EFS87939.1| DEAD/DEAH box helicase [Propionibacterium acnes HL001PA1]
 gi|314982201|gb|EFT26294.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA3]
 gi|315103937|gb|EFT75913.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2]
 gi|315106118|gb|EFT78094.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1]
          Length = 491

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 190/347 (54%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LG+  ++V A+   G   P  IQI  IP  +   DV G A TG+GKT +F +P+L+ 
Sbjct: 22  FSALGVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSR 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L         PR LIL PTRELA Q+AD       +  L+  L+ GG+ +  Q K  +RG
Sbjct: 82  LSATPREDNRPRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFKRG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR++D    G   ++ + + V+DEAD M ++GF+  + +I   +P   Q LL
Sbjct: 142 VDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRLL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + K+   ++  P   EV+    +  T+ H   A   +  +K  L+ ++    
Sbjct: 202 FSATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHH--AFQIKPHEKVGLMCEIANRS 259

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
               + I+F   ++    +   L + G    A+HG + Q +R ++L+ FK+G++ ++VA+
Sbjct: 260 ---GHTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVAT 316

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+ DV  V   D P   ++Y+HR GRT RAG  G   +LV
Sbjct: 317 DVAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLV 363


>gi|221117076|ref|XP_002155771.1| PREDICTED: vasa-related protein CnVAS2 [Hydra magnipapillata]
          Length = 890

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 135/389 (34%), Positives = 210/389 (53%), Gaps = 26/389 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++  L P  +  +  A Y +PTPIQ   IP +L + DV   A TG+GKTASF+LP++T 
Sbjct: 452 FSEANLHPVCLKNLDLAKYKEPTPIQKYAIPAILAKRDVMACAXTGSGKTASFLLPIITN 511

Query: 62  ILEKGRAR-------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           ++ +G          V +P   IL PTREL  Q+     K+  N +L   +L GG+    
Sbjct: 512 LMNEGLDNIDSNIDGVALPLAAILAPTRELVVQLFTEARKFSYNSSLKPVVLYGGVAVAH 571

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  +L  G  +L+ TPGR+ D   RGK+   N++ L++DEAD+M+DMGF P I++I    
Sbjct: 572 QADRLRMGCHLLVATPGRLEDFIKRGKVNFQNLKYLILDEADKMIDMGFGPQIEHIIEFS 631

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  R TL+FSAT  D++Q ++  FL +   + V     T   +    +      +K
Sbjct: 632 GMPPKGIRNTLMFSATFPDQIQHLAAQFLNDYLFLTVGRVGGTCTDVTQSVIQVSG--TK 689

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K   L+ LLQ+  + +  ++F  +K++   L + L ++ F   +++ +  Q  R   L +
Sbjct: 690 KRETLENLLQTSGSDRT-LVFVEKKRDADFLANFLSQKNFPATSLNADRTQEERESALKD 748

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL-- 348
           F+ G   ++VA+ +AARGLDI DV HV N+D+P  A  Y+HRIGRTGR G  GKA +   
Sbjct: 749 FRNGIAPILVATAVAARGLDINDVKHVINYDLPKDANEYVHRIGRTGRIGNKGKATSFFD 808

Query: 349 ------VAKEDIKHIDAIEKLIEKKVDWL 371
                 +A+  +K +   E+ +    DWL
Sbjct: 809 LDRDGSLARSLVKLLSDAEQDVP---DWL 834


>gi|154324248|ref|XP_001561438.1| hypothetical protein BC1G_00523 [Botryotinia fuckeliana B05.10]
 gi|160419159|sp|A6RJA2|PRP28_BOTFB RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|150842752|gb|EDN17945.1| hypothetical protein BC1G_00523 [Botryotinia fuckeliana B05.10]
          Length = 783

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 123/395 (31%), Positives = 211/395 (53%), Gaps = 31/395 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++++  L  +++  +   GY +P+ +Q   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 381 NWSESKLPKRLLDVIHQVGYDEPSAVQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLV 440

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + +        +   P  +IL PTRELA Q+    +K+      T   ++GG   E Q+
Sbjct: 441 YISELPPLNEFTKNDGPYAIILAPTRELAQQIEVEAKKFATPLGFTCVSIVGGHSLEEQS 500

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GA+++I TPGR++D   R  L++     +++DEADRM+D+GF   +  I   +P 
Sbjct: 501 YNLRNGAEIIIATPGRLVDCIERRVLVLGQCCYIIMDEADRMIDLGFEESVNKILDALPV 560

Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           +                         RQT++++ATM   ++K+++ +L+ P  + +    
Sbjct: 561 SNEKPDTDDAEDAQAMSRHLGGKDRYRQTMMYTATMPPAVEKIAKKYLRRPAIVTIGNIG 620

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
              ET+E   V   A   K+   L ++L S +     I+F N K+N   +   ++  GF+
Sbjct: 621 EAVETVEQ-RVEFVAGEDKRKKRLNEILASGEFAPPIIVFVNIKRNCDAVARDIKHMGFT 679

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
              +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y H
Sbjct: 680 SVTLHGSKTQEQREAALASVRSGATNVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTH 739

Query: 332 RIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RIGRTGRAG+ G A T +  ED   +  +++++ K
Sbjct: 740 RIGRTGRAGKSGVAITFLGNEDSDTMYDLKQMLTK 774


>gi|193683780|ref|XP_001952119.1| PREDICTED: ATP-dependent RNA helicase abstrakt-like [Acyrthosiphon
           pisum]
          Length = 615

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 203/373 (54%), Gaps = 22/373 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L+  ++  +   G  KPTPIQI+ IP VL   D+ GIA TG+GKT  FVLP+L  
Sbjct: 176 FKEMKLNKGIMAGLSQKGIKKPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFVLPLLMF 235

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKY-----GKNY-NLTVALLIGGIP 111
             +   ++       P  LI+ P+RELA Q  D    Y       NY  L   L IGGIP
Sbjct: 236 CLEQEIKLPFKPNEGPYGLIICPSRELAKQTFDIINHYMTFLERSNYPRLRSCLAIGGIP 295

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
                  ++RG  +++ TPGR++D  ++  + +     L +DEADRM+DMGF   ++ I 
Sbjct: 296 VFESLDVIKRGVHIMVATPGRLMDMLDKKMINLEVCRYLCMDEADRMIDMGFEEDVRTIF 355

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  + + L  P  I +N   + A ++       Y +   K
Sbjct: 356 SFFQGQRQTLLFSATMPKKIQNFARSALVKP--ITINVGRAGAASMNVIQEVEYVKQEAK 413

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L + L+   T    +IF  +K++V  +   L  +G    AIHG  DQ  R K +  F
Sbjct: 414 VVYLLECLKK--TTPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERSKSVDAF 471

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           ++G   ++VA+D+A++GLD  ++ HV N+D+P+  ENY+HRIGRTGR+G+ G A T + K
Sbjct: 472 RKGQKDVLVATDVASKGLDFEEIQHVINYDMPDDVENYVHRIGRTGRSGKTGIATTFINK 531

Query: 352 E-------DIKHI 357
                   D+KH+
Sbjct: 532 ANDESVLLDLKHL 544


>gi|167522064|ref|XP_001745370.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776328|gb|EDQ89948.1| predicted protein [Monosiga brevicollis MX1]
          Length = 498

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 134/422 (31%), Positives = 224/422 (53%), Gaps = 17/422 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +   GLS  ++  +    Y  PTPIQ + IP+V+   D+ GIA+TG GKT +F+LP+L  
Sbjct: 62  WGQTGLSKTILAILKQLKYENPTPIQAQAIPVVMSGRDMLGIAKTGCGKTLAFLLPLLRH 121

Query: 63  LEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +   R   +   +     LI+ PTRELA Q+ +   K+ K+ +L V  L GG     Q  
Sbjct: 122 VMDQRKCAQGEASPGCIGLIMSPTRELALQIYNETRKFCKHLDLRVVCLYGGSDISDQIA 181

Query: 118 KLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
            L+  A++++CTPGR++D    N G++  +     + +DEADRM DMGF P +  I   +
Sbjct: 182 LLKSAAEIIVCTPGRMIDMLTVNSGRVTNLRRCTYVALDEADRMFDMGFEPQVTRILDNI 241

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQT++FSAT    ++ ++   L  P  + V   S  +  I+   +    +  +K   
Sbjct: 242 RPDRQTVMFSATFPRAMEALARKILTKPVEVTVGGRSIVSNIIKQNVIVM--REGEKFQK 299

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L +LL       + I+F ++++   ++  +L K G+   A+HG + Q  R   L +F+ G
Sbjct: 300 LLELLGHFFEQGSIIVFVHKQEKADSVLENLIKNGYPCLALHGAVSQEDRASNLRDFRAG 359

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            +++MVA+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAGR G A+T +  +D 
Sbjct: 360 NVKIMVATSIAARGLDVKQLCLVVNYDCPNHYEDYVHRCGRTGRAGREGTAYTFLTADDK 419

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           K+   I + +      +  DL  L    ++  + Q    +K      +++GF  R   ++
Sbjct: 420 KYAGNIIRALHASKAQVPEDLQKL---WDQYKLEQKAAGKKVG----RTSGFSGRGYKFT 472

Query: 415 SQ 416
           ++
Sbjct: 473 AE 474


>gi|156375512|ref|XP_001630124.1| predicted protein [Nematostella vectensis]
 gi|156217139|gb|EDO38061.1| predicted protein [Nematostella vectensis]
          Length = 446

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 135/366 (36%), Positives = 199/366 (54%), Gaps = 11/366 (3%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRARVRMP 73
           G+ +PT IQ +  P+ L   ++ GIAQTG+GKT SF+LP +       +L+ G      P
Sbjct: 77  GFTEPTMIQAQGWPVALTGRNLVGIAQTGSGKTLSFILPGIVHINHQPLLQPGDG----P 132

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
             L+L PTRELA QV +     GK+  L    + GG P   Q ++LERG ++ I TPGR+
Sbjct: 133 IVLVLCPTRELAQQVQEVAYSVGKHCKLRSTCIYGGAPKGPQIRELERGVEICIATPGRL 192

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193
           +D     K  +     LV+DEADRMLDMGF P I+ I   +   RQTL++SAT   E+Q 
Sbjct: 193 IDMLESRKTNLRRCTYLVLDEADRMLDMGFEPQIRTIIDQIRPDRQTLMWSATWPKEVQG 252

Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN-GIIFC 252
           ++ +FL +   I V +   TA       V     + K+  LL+ L +     +N  +IF 
Sbjct: 253 LAHDFLSDYVHITVGSLGLTANHKILQIVDVCEDHEKEHKLLKLLEEIMGEKENKTLIFT 312

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             K+    L   L   G+    IHG+  Q  R  +LS F++G   ++VA+D+A+RGLDI 
Sbjct: 313 ETKRRADELTRKLRSDGWPAMCIHGDKAQPERDWVLSEFRKGHAPILVATDVASRGLDIS 372

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
           D+  V NFD PN  E+Y+HRIGRT R+ R G ++T     + K    +  ++++    +N
Sbjct: 373 DIKFVINFDFPNCTEDYVHRIGRTARSDRTGTSYTFFTVNNAKQAKELVSVLQEAKQHVN 432

Query: 373 GDLSSL 378
             L +L
Sbjct: 433 PKLLNL 438


>gi|17510307|ref|NP_491112.1| Vasa- and Belle-like Helicase family member (vbh-1) [Caenorhabditis
           elegans]
 gi|14574398|gb|AAK68520.1|AC024810_19 Vasa- and belle-like helicase protein 1, isoform b, confirmed by
           transcript evidence [Caenorhabditis elegans]
          Length = 644

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 204/363 (56%), Gaps = 19/363 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G  P V+  V  +GY KPTP+Q  +IP +L   D+   AQTG+GKTA+F+LP++  
Sbjct: 125 FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQH 184

Query: 62  ILEKG-----------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           IL  G             R   P  L+L PTRELA Q+     K+    N+  A+L GG 
Sbjct: 185 ILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGR 244

Query: 111 P-FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
             +  Q  +L  G  +LI TPGR++D   +G + +     LV+DEADRMLDMGF P I+ 
Sbjct: 245 ENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRK 304

Query: 170 ITS--LVPFT-RQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATY 225
           I    + P T R T +FSAT   E+Q ++++FL+ N   + V    ST+E IE   +  +
Sbjct: 305 IVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLL--W 362

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
               +K + L ++L ++ +    ++F   K+    L + L +Q     +IHG++ Q  R 
Sbjct: 363 VNEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERE 422

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P  ++ Y+HRIGRTGR G  G A
Sbjct: 423 RNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIA 482

Query: 346 FTL 348
            + 
Sbjct: 483 TSF 485


>gi|302696669|ref|XP_003038013.1| hypothetical protein SCHCODRAFT_43190 [Schizophyllum commune H4-8]
 gi|300111710|gb|EFJ03111.1| hypothetical protein SCHCODRAFT_43190 [Schizophyllum commune H4-8]
          Length = 674

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 124/361 (34%), Positives = 202/361 (55%), Gaps = 8/361 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL    +  +    Y  PTPIQ + +P ++   DV G+A+TG+GKT +F++P+   
Sbjct: 82  WSHFGLPASCLDVIKRLNYTAPTPIQAQAVPAIMSGRDVIGVAKTGSGKTIAFLIPLFRH 141

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++  R    M  P  L++ PTRELA Q+    + + K  NL      GG P + Q   L+
Sbjct: 142 IKDQRPLEPMEGPIALVMTPTRELATQIHRECKPFLKVLNLRAVCAYGGSPIKDQIADLK 201

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +GA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I + +   
Sbjct: 202 KGAEIIVCTPGRMIDLLTANSGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIINNIRPD 261

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT   ++  ++   L+ P  I V   S  A  IE   V    + +K   LL+ 
Sbjct: 262 RQTVLFSATFPKQMDSLARKILKKPLEITVGGRSVVAAEIEQ-IVEVREEDTKFMRLLEI 320

Query: 238 LLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L Q  ++D     +IF ++ +   NL   L ++G+   ++HG  +Q  R   +++FK G 
Sbjct: 321 LGQMYNEDPDCRTLIFVDRHEAADNLLRELMRKGYLCMSLHGGREQVDRDATIADFKAGV 380

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G   T +  E  +
Sbjct: 381 VPIVIATSVAARGLDVKQLKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCVTFIEPEQER 440

Query: 356 H 356
           +
Sbjct: 441 Y 441


>gi|294947712|ref|XP_002785456.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
 gi|239899367|gb|EER17252.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
          Length = 695

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 131/365 (35%), Positives = 207/365 (56%), Gaps = 21/365 (5%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F D G ++  +V  +   G+ +PTP+Q  +IP +  R D+   AQTG+GKT ++++P + 
Sbjct: 208 FNDGGEVAAAIVENIKRCGFDRPTPVQKYSIPTLTTRRDLMSCAQTGSGKTGAYLIPAIH 267

Query: 62  IL------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            +            + GR R   P TLIL PTRELA+Q+ +   K+  N  +   ++ GG
Sbjct: 268 NMLADGPPDATSSGDYGR-RKAYPITLILSPTRELASQIHEEARKFCFNTGIRPVVVYGG 326

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q ++LERG D+L+ TPGR+ D   R ++ +  I++L+ DEADRMLDMGF P I+ 
Sbjct: 327 ADVRTQLRELERGCDILVATPGRLSDLMERFRVSLCQIKMLIFDEADRMLDMGFEPQIRR 386

Query: 170 ITSL--VPFTR---QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           I     +P +R   Q+ +FSAT   E+Q+++ +FL++   + V    ST  +I+   +  
Sbjct: 387 IVEQEDMPSSRDGRQSAMFSATFPREIQQLARDFLKDYIYLTVGRVGSTHGSIKQ--IMR 444

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
           Y   + K   L ++L+ Q      ++F   K+    + + L +  +   +IHG+  Q  R
Sbjct: 445 YVDENSKLRDLYRVLEEQTEEGLTLVFVETKRKADEIENMLRRDRYPATSIHGDRSQWER 504

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + L  FK G + ++VA+D+AARGLDI  V  V N+D+PN  ++Y+HRIGRTGRAG  G 
Sbjct: 505 EEALKAFKSGELPILVATDVAARGLDISHVNLVINYDLPNNIDDYVHRIGRTGRAGNLGT 564

Query: 345 AFTLV 349
           A   V
Sbjct: 565 AIAFV 569


>gi|242024557|ref|XP_002432694.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212518164|gb|EEB19956.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 407

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + ++  
Sbjct: 36  FDRMGLREELLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISIIQS 95

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     VR  + L L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 96  LD---TTVRETQVLCLSPTRELAVQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYG 152

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 153 QHVISGTPGRVFDMIRRRVLRTRFIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 212

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 213 ISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 271

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V  +HG++ Q+ R  I+  F+ G  +++
Sbjct: 272 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSCMHGDMPQKERDAIMKEFRTGLSRVL 327

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 328 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRD 387

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 388 IEQYYSTQIDEMPMNVADL 406


>gi|152013480|sp|A5E1W4|DBP3_LODEL RecName: Full=ATP-dependent RNA helicase DBP3
          Length = 535

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 129/344 (37%), Positives = 199/344 (57%), Gaps = 11/344 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           + KPTPIQ  + P +L   DV G+A+TG+GKT +F +P +  +   + +      L + P
Sbjct: 146 FPKPTPIQSVSWPFLLDGKDVVGVAETGSGKTFAFGVPAINNIITSKNKDL--SVLCISP 203

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TRELA Q+ DN E   +  +++   + GG+  + Q KK+  GA+V++ TPGR++D  N G
Sbjct: 204 TRELALQIYDNLEDLTRGTDVSCVAIYGGVSKDDQIKKIRNGANVVVATPGRLVDLINDG 263

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQTLLFSATMTDELQKVSENFL 199
            + +++I  LV+DEADRML+ GF   I+ I    P   RQTL+F+AT   E+++++ NF+
Sbjct: 264 AVDLSSINYLVLDEADRMLEKGFEEDIKLIIGSTPAQGRQTLMFTATWPKEVRELANNFM 323

Query: 200 QNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG----IIFCN 253
             P ++ +      S  + I         ++ K+  L+  LLQ      NG    ++F  
Sbjct: 324 NQPVKVTIGDRDELSANKRITQIVEVLDDKFQKEKKLIN-LLQKYQNTGNGDNKILVFAL 382

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            KK    +   L +  F V AIHG++ Q+ R + L +FK G   L++A+D+AARGLDIP+
Sbjct: 383 YKKEASRIESLLHRNKFKVAAIHGDLSQQQRTQALQSFKSGECNLLLATDVAARGLDIPN 442

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           V +V N   P   E+Y+HR+GRTGRAG+ G A T    ED KH+
Sbjct: 443 VKYVINLTFPLTIEDYVHRLGRTGRAGQTGIAHTFFT-EDEKHL 485


>gi|84996983|ref|XP_953213.1| DEAD-box family RNA-dependent helicase [Theileria annulata strain
           Ankara]
 gi|65304209|emb|CAI76588.1| DEAD-box family RNA-dependent helicase, putative [Theileria
           annulata]
          Length = 616

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 132/367 (35%), Positives = 206/367 (56%), Gaps = 19/367 (5%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTG---TGKTASFVLPMLTILEKGRA 68
           ++ ++  AG+ +PTPIQ++  P+ L   D+ GIA+TG   +GKT +F+LP +  +   +A
Sbjct: 199 ILSSIESAGFKEPTPIQVQAWPIALSGRDMIGIAETGITRSGKTLAFLLPAIVHI-NAQA 257

Query: 69  RVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
            +R    P  L+L PTRELA Q+ +    +G++  L  ++  GG+P + Q   L RG ++
Sbjct: 258 LLRPGDGPIVLVLAPTRELAEQIKETALVFGRSSKLKTSVAYGGVPKKFQTIALRRGVEI 317

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           LI  PGR++D        +  +  LV+DEADRMLDMGF P I+ I   +   RQTL+FSA
Sbjct: 318 LIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLMFSA 377

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPS---STAETIE-HCFVATYAQYSKKCALLQQLLQS 241
           T   E+  +S + L + + + VN  S   +T   IE + F+       ++   L+     
Sbjct: 378 TWPKEVISLSRSLLSH-EVVHVNIGSLDLTTCHNIEQNVFILE-----EREKRLKLKELL 431

Query: 242 QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  M  G  +IF   KK    L   L   G+    IHG+  Q  R  +L+ FK G   +M
Sbjct: 432 KKLMDGGKILIFSETKKGADTLTRELRLDGWPALCIHGDKKQEERTWVLNEFKTGKHPIM 491

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ DV +V N+D P + E+Y+HRIGRTGRAG  G ++T +  +  K    
Sbjct: 492 IATDVASRGLDVRDVKYVINYDFPGQIEDYVHRIGRTGRAGMKGSSYTFLTPDKFKSARE 551

Query: 360 IEKLIEK 366
           + KL+ +
Sbjct: 552 LVKLMRE 558


>gi|125775187|ref|XP_001358845.1| GA20384 [Drosophila pseudoobscura pseudoobscura]
 gi|195144826|ref|XP_002013397.1| GL23429 [Drosophila persimilis]
 gi|54638586|gb|EAL27988.1| GA20384 [Drosophila pseudoobscura pseudoobscura]
 gi|194102340|gb|EDW24383.1| GL23429 [Drosophila persimilis]
          Length = 399

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 208/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L  
Sbjct: 28  FNAMNLKEELLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQS 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     +R  + L L PTRELA Q+       G   N+   + IGG       +KL+ G
Sbjct: 88  LD---TTLRETQVLCLSPTRELAVQIQKVILALGDMMNVLCHVCIGGTNLGEDIRKLDYG 144

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 145 QHIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 204

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 205 ISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R +I+  F+ G  +++
Sbjct: 264 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 320 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRD 379

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 380 IEQYYSTQIDEMPMNVADL 398


>gi|242020238|ref|XP_002430562.1| ATP-dependent RNA helicase DBP4, putative [Pediculus humanus
           corporis]
 gi|212515734|gb|EEB17824.1| ATP-dependent RNA helicase DBP4, putative [Pediculus humanus
           corporis]
          Length = 606

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 139/391 (35%), Positives = 217/391 (55%), Gaps = 24/391 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS   +  + ++ Y+ P+ IQ ++I   LQ  DV G AQTG+GKT +F++P+L I
Sbjct: 53  FSDFPLSRSTLKGLYESNYITPSEIQRESIGYALQGEDVLGAAQTGSGKTLAFLIPVLEI 112

Query: 63  LE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  K   R+     LI+ PTRELA Q+ +  +K GK+++ +  L+IGG     +  ++++
Sbjct: 113 LYCKQWTRLDGVGALIITPTRELAYQIFETLKKIGKHHDFSAGLIIGGKDLHFEKGRMDQ 172

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             +++ICTPGRIL H +   L   N+++ILV+DEADR LD+GF   + NI   +P  RQT
Sbjct: 173 -CNIIICTPGRILHHMDENPLFDCNSMQILVLDEADRCLDLGFQETMNNIIENLPPKRQT 231

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT T  ++ ++   L+NPK + V+     ST E++E  +V    +   K  ++   
Sbjct: 232 LLFSATQTKSVKDLARLSLKNPKYVAVHEHKSHSTPESLEQSYVV--CELHDKIKMIWSF 289

Query: 239 LQSQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +++    K  I    C Q K +  L   L + G  + A++G + Q  RMKI   F     
Sbjct: 290 IKNHKRQKILIFLSSCKQVKYIYLLFCRL-RPGSPLLALYGKLHQLRRMKIYDEFCAKQN 348

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +M A+D+AARGLD PDV  V   D P  A+ YIHR GRT R  + G++  +        
Sbjct: 349 VVMFATDIAARGLDFPDVNWVVQLDCPEDAKTYIHRAGRTARYKKGGESLLV-------- 400

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
                 L+  +   ++ +LS+   P+ KI+I
Sbjct: 401 ------LLPSEEKAMSEELSAEKIPISKIEI 425


>gi|194744201|ref|XP_001954583.1| GF18341 [Drosophila ananassae]
 gi|194903996|ref|XP_001980981.1| GG24917 [Drosophila erecta]
 gi|195055753|ref|XP_001994777.1| GH14195 [Drosophila grimshawi]
 gi|195110945|ref|XP_002000040.1| GI24868 [Drosophila mojavensis]
 gi|195391782|ref|XP_002054539.1| GJ24512 [Drosophila virilis]
 gi|195499068|ref|XP_002096791.1| GE25867 [Drosophila yakuba]
 gi|190627620|gb|EDV43144.1| GF18341 [Drosophila ananassae]
 gi|190652684|gb|EDV49939.1| GG24917 [Drosophila erecta]
 gi|193892540|gb|EDV91406.1| GH14195 [Drosophila grimshawi]
 gi|193916634|gb|EDW15501.1| GI24868 [Drosophila mojavensis]
 gi|194152625|gb|EDW68059.1| GJ24512 [Drosophila virilis]
 gi|194182892|gb|EDW96503.1| GE25867 [Drosophila yakuba]
          Length = 399

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 208/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L  
Sbjct: 28  FNAMNLKEELLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQS 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     +R  + L L PTRELA Q+       G   N+   + IGG       +KL+ G
Sbjct: 88  LD---TTLRETQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYG 144

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 145 QHIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 204

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 205 ISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R +I+  F+ G  +++
Sbjct: 264 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 320 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRD 379

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 380 IEQYYSTQIDEMPMNVADL 398


>gi|24645031|ref|NP_649788.2| eIF4AIII [Drosophila melanogaster]
 gi|7299019|gb|AAF54221.1| eIF4AIII [Drosophila melanogaster]
          Length = 399

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 208/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L  
Sbjct: 28  FNAMNLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQS 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     +R  + L L PTRELA Q+       G   N+   + IGG       +KL+ G
Sbjct: 88  LD---TTLRETQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYG 144

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 145 QHIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 204

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 205 ISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R +I+  F+ G  +++
Sbjct: 264 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 320 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRD 379

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 380 IEQYYSTQIDEMPMNVADL 398


>gi|327325572|gb|EGE67371.1| ATP-dependent RNA helicase [Propionibacterium acnes HL103PA1]
          Length = 491

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 190/347 (54%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LG+  ++V A+   G   P  IQI  IP  +   DV G A TG+GKT +F +P+L+ 
Sbjct: 22  FSALGVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSR 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L         PR LIL PTRELA Q+AD       +  L+  L+ GG+ +  Q K  +RG
Sbjct: 82  LSATPREDNRPRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFKRG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR++D    G   ++ + + V+DEAD M ++GF+  + +I   +P   Q LL
Sbjct: 142 VDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRLL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + K+   ++  P   EV+    +  T+ H   A   +  +K  L+ ++    
Sbjct: 202 FSATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHH--AFQIKPHEKVGLMCEIANRS 259

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
               + I+F   ++    +   L + G    A+HG + Q +R ++L+ FK+G++ ++VA+
Sbjct: 260 ---GHTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLTAFKDGSLPVLVAT 316

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+ DV  V   D P   ++Y+HR GRT RAG  G   +LV
Sbjct: 317 DVAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLV 363


>gi|255072433|ref|XP_002499891.1| predicted protein [Micromonas sp. RCC299]
 gi|226515153|gb|ACO61149.1| predicted protein [Micromonas sp. RCC299]
          Length = 394

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 203/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G+   ++  +   G+ KP+ IQ + I  +    DV   AQ+GTGKT+   L +  +
Sbjct: 23  FDGMGIREDLLRGLYSYGFEKPSAIQQRAIVPITSGRDVIAQAQSGTGKTSMISLALCQM 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+      R  + L+L PTRELA Q        G   ++ V   IGG       +KL+ G
Sbjct: 83  LD---TNTREVQALVLSPTRELATQTEKTALALGNFMSVQVHACIGGRSIGEDIRKLDHG 139

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L   NI+ L++DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 140 VHIVSGTPGRVFDMIKRRNLRTRNIKALILDEADEMLNKGFKEQIYDVYRYLPPETQVVL 199

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 200 VSATLPQEVLEMTTKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL- 258

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ GT +++
Sbjct: 259 ----TITQAVIFCNTKRKVDWLTDKMRQNNFTVSSMHGDMPQKERDAIMGEFRGGTTRVL 314

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  ENYIHRIGR+GR GR G A   V  +D++ +  
Sbjct: 315 ITTDVWARGIDVQQVSLVINYDLPNNRENYIHRIGRSGRYGRKGVAINFVKADDVRILRD 374

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 375 IEQYYSTQIDEMPMNVADL 393


>gi|170064174|ref|XP_001867417.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus]
 gi|167881558|gb|EDS44941.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus]
          Length = 663

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 127/380 (33%), Positives = 208/380 (54%), Gaps = 11/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + G    ++  +   GY +PT IQ     +     D+ GIA+TG+GKT +++LP L  
Sbjct: 80  FEEGGFPSSILAEITRQGYKEPTQIQAVGWSIATSGRDMVGIAKTGSGKTLAYILPALIH 139

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +      +R   P  L+L PTRELA Q+    + +G+  ++    + GG     Q   L 
Sbjct: 140 ISNQPRLMRGDGPIALVLAPTRELAQQIQQVCDDFGRRMSVMNTCIFGGASKMGQANDLR 199

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D    G   +     LV+DEADRMLDMGF P I+ I S +   RQ 
Sbjct: 200 RGVEIVIATPGRLIDFLESGTTNLRRTTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQV 259

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALL 235
           L++SAT   E++K++E FL++  +I + + +  A     + IE C    Y + S+   LL
Sbjct: 260 LMWSATWPKEIRKLAEEFLRDYIQINIGSLNLAANENILQIIECC--QEYEKESRLFKLL 317

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            ++ +  D     I+F   K+ V  +   +++ G+    IHG+  Q+ R  +L+ F+   
Sbjct: 318 AEIGKQGDN--KAIVFVETKRKVDQIAGIIKRNGWRADGIHGDKTQKDRDYVLNTFRRMN 375

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+D+A+RGLD+ DV +V NFD PN  E+YIHRIGRTGR+   G A+T     +  
Sbjct: 376 NGILVATDVASRGLDVDDVKYVINFDFPNNTEDYIHRIGRTGRSTNKGTAYTFFTPANSS 435

Query: 356 HIDAIEKLIEKKVDWLNGDL 375
             + + ++++    ++N +L
Sbjct: 436 KANDLIQVLKTANQYVNPEL 455


>gi|300113246|ref|YP_003759821.1| DEAD/DEAH box helicase domain-containing protein [Nitrosococcus
           watsonii C-113]
 gi|299539183|gb|ADJ27500.1| DEAD/DEAH box helicase domain protein [Nitrosococcus watsonii
           C-113]
          Length = 431

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 139/421 (33%), Positives = 230/421 (54%), Gaps = 19/421 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L L+  ++  +  AG+V  TPIQ   +PL+L   DV G AQTGTGKTA+F+L  +
Sbjct: 9   ISFDSLNLAEALIQGIQKAGFVICTPIQALALPLLLAGEDVAGQAQTGTGKTAAFLLATM 68

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L  E      + PR LI+ PTRELA QV+ + +  G++ +L   ++ GG  +  Q   
Sbjct: 69  QRLLREPSVGVSQQPRGLIVVPTRELAIQVSKDAQLLGQHTDLRCVVVYGGTNYRKQRHL 128

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176
           LE+G D+LI TPGR++D++ +G +    I+ +V+DEADRM D+GFI  I+ I   +P   
Sbjct: 129 LEQGCDILIGTPGRLIDYYQQGIIGFKKIQTVVLDEADRMFDLGFIRDIRYILRRLPPPD 188

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R  +LFSAT++  + +++  ++ NP+ + +     T + I       Y   +++   L 
Sbjct: 189 KRLGMLFSATLSLRVMELAYEYMNNPRLLRIEPQKVTVDKITE---RIYFPANEEKISLL 245

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L  +   ++ I+F N K     +   LE  GF    +  ++ Q  R ++L+ F++G  
Sbjct: 246 LALLKRLAPRHAIVFANTKHGAEQVWGYLEGNGFKAALLSSDVPQGKRQRLLTAFQDGIY 305

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL +  V HVFN+D+P   E+Y+HRIGRT RAG  G A +   ++    
Sbjct: 306 PILVATDVAARGLHVSTVTHVFNYDLPQDPEDYVHRIGRTARAGASGSAVSFACEDYAFS 365

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  IE+ I  KV   + +   L  P +++ ++  +  +             R++ +YS Q
Sbjct: 366 LPDIEEYIGHKVVPFSVEEEELLVPKQRVFLSYKDKKK------------SRKEASYSGQ 413

Query: 417 K 417
           K
Sbjct: 414 K 414


>gi|121606431|ref|YP_983760.1| ATP-dependent RNA helicase DbpA [Polaromonas naphthalenivorans CJ2]
 gi|120595400|gb|ABM38839.1| ATP-dependent RNA helicase DbpA [Polaromonas naphthalenivorans CJ2]
          Length = 467

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 139/395 (35%), Positives = 213/395 (53%), Gaps = 14/395 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ L L   V+  +   GY   TPIQ   +P+ L   D+   A+TG+GKTA+F L +L 
Sbjct: 7   DFSALSLPAHVLANLTQLGYTSMTPIQAAALPVALLGKDLIAQAKTGSGKTAAFALALLA 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120
            L   R  ++    ++L PTRELA QV     +  +   N+ V  L GG+    Q   LE
Sbjct: 67  NLNARRFAIQ---AMVLCPTRELADQVTTEIRRLARAEENIKVVTLCGGVALRNQIASLE 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRI+DH  RG L +  +  LV+DEADRMLDMGF   I  +    P  RQT
Sbjct: 124 HGAHIVVGTPGRIMDHLGRGNLDLAAMNTLVLDEADRMLDMGFFDDIATVAKQCPKERQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + + K+S+ F++NP+ + V      ++  +  +      + +  A L  + +
Sbjct: 184 LLFSATYPEGIAKISQQFMKNPQTVTVQAQHEKSKIRQRWYQVEDTDHDE--ARLDAVAR 241

Query: 241 SQDTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +  +  + + FCN K     L   L+ +GF   A++G ++QR R ++L  F   +  +
Sbjct: 242 VLNHYRPVSTLAFCNTKSQCRALVQLLKDKGFIALALYGELEQRERDQVLVQFANRSCSV 301

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  +  V N DV   +E +IHRIGRTGRA   G A +L + +++  + 
Sbjct: 302 LVATDVAARGLDISQLEMVINVDVTPDSEIHIHRIGRTGRADEEGWAISLASMDEMGSVG 361

Query: 359 AIEKLIEKKVDWLNGDLSS------LNPPLEKIDI 387
            IE L + + +W   D  +      L PP+  + I
Sbjct: 362 KIEVLQKAESEWHKLDELTPASKEPLRPPMATLQI 396


>gi|328881710|emb|CCA54949.1| ATP-dependent RNA helicase [Streptomyces venezuelae ATCC 10712]
          Length = 522

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 127/350 (36%), Positives = 186/350 (53%), Gaps = 4/350 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +   ++  + + G  +P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 11  FADLDMPEGLLRTLGEQGVTEPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA    P  L+L PTRELA QV D    Y     L +  ++GG+    Q+  L RG
Sbjct: 71  TAGRRAESGAPLALVLVPTRELAQQVTDALTPYAAALRLRITTVVGGMSISRQSSALRRG 130

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+VLI TPGR+ D  +RG   ++ + + V+DEAD+M DMGF+P +  +   V    Q LL
Sbjct: 131 AEVLIATPGRLHDLIDRGDCRLDQVAVTVLDEADQMADMGFLPQVTKLLKQVEPGGQRLL 190

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++ + FL +P    V+  +    T+EH  +    +  KK   L+   +  
Sbjct: 191 FSATLDRNVDRLVKMFLDDPVVHSVDPSAGAVTTMEHHVLYVMDETDKKAVTLKIAARDG 250

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T    I+F + K++V  L   L   G     +HG   Q  R + L  FK G +  +VA+
Sbjct: 251 RT----ILFLDTKRSVDRLVKRLLANGVRASGLHGGRSQPQRNRTLDQFKSGQVTTLVAT 306

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           ++AARG+ + D+  V N D P   ++Y+HR GRT RAG  G  FTLV  E
Sbjct: 307 NVAARGIHVDDLDMVVNVDPPMDHKDYLHRGGRTARAGESGSVFTLVLPE 356


>gi|223590207|sp|A5DE68|FAL1_PICGU RecName: Full=ATP-dependent RNA helicase FAL1
 gi|190345565|gb|EDK37471.2| hypothetical protein PGUG_01569 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 397

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 121/379 (31%), Positives = 208/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P+++  + + G+  P+ IQ + I  +++  D    AQ+GTGKTA+F + +L+ 
Sbjct: 26  FESMNLKPELLKGIYNYGFEAPSAIQSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILSS 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    + +  + L+L PTRELA Q+ +  E  G   N+     IGG       KKL++G
Sbjct: 86  ID---TKSKDCQALVLSPTRELAQQIENVIEHLGDYMNVRSHACIGGTQVGEDVKKLQQG 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+LD   R  ++  ++++LV+DEAD +L  GF   I  I   +P   Q ++
Sbjct: 143 QHIISGTPGRVLDMIKRRNIMPRHVKMLVLDEADELLTKGFKEQIYEIYKTLPAGAQVVV 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+T E+ +++  F  +P +I V     T + I+  ++    +   +   C L   L 
Sbjct: 203 VSATLTPEVLEMTNKFTSDPVKILVKRDDVTLKGIKQYYIQCEKEDWKFDTLCDLYDNL- 261

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K  V  L   + K  F+V A+HG++ Q  R  I+  F+ G+ +++
Sbjct: 262 ----TITQAVIFCNTKAKVNWLAGQMRKSNFTVAAMHGDMKQEDRDSIMKEFRSGSTRVL 317

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENY+HRIGR+GR GR G A  L+  +D   + +
Sbjct: 318 ISTDVWARGIDVQQVSLVINYDLPLDKENYVHRIGRSGRFGRKGTAINLLTSQDKDELKS 377

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           ++     K+  +  DLS +
Sbjct: 378 LQHYYSTKIREVPADLSKI 396


>gi|256789946|ref|ZP_05528377.1| DEAD-box RNA-helicase [Streptomyces lividans TK24]
 gi|289773828|ref|ZP_06533206.1| DEAD-box RNA-helicase [Streptomyces lividans TK24]
 gi|289704027|gb|EFD71456.1| DEAD-box RNA-helicase [Streptomyces lividans TK24]
          Length = 439

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 124/356 (34%), Positives = 192/356 (53%), Gaps = 5/356 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +V  +   G  +P PIQ  T+P  L   DV G A+TG+GKT +F L +L  
Sbjct: 9   FDGLGLPPVLVETMTSLGVTRPFPIQAATLPEALAGRDVLGRARTGSGKTLAFGLALLAG 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  + P  L+L  TRELA QV+D    Y +   + +  ++GG+    Q + L  G
Sbjct: 69  TAGRRAEPKRPLALVLVSTRELAQQVSDALAPYARALGVRLTTVVGGLSINRQTQALRDG 128

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D  +R    +N + I V+DEAD+M D+GF+P +  I   VP   Q LL
Sbjct: 129 AEVVVATPGRLTDLVSRRDCHLNQVRITVLDEADQMCDLGFLPQVSGILDQVPSDGQRLL 188

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  ++ ++  + L  P  + V+  S++  T+EH  +  +   + K A   ++    
Sbjct: 189 FSATLDGDVDQLVRDHLHAPVPVSVDPASASVSTMEHHVLTVHP--ADKYATATEIAARD 246

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   ++F + K  V      L   G S  A+H    Q  R   L+ F EG + ++VA+
Sbjct: 247 GRV---LMFLDTKAGVDRFTRELRAAGVSAGALHSGKSQPQRTHTLARFVEGGVTVLVAT 303

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++AARG+ + D+  V N D P  A++Y+HR GRT RAGR G   TLV  +  + ++
Sbjct: 304 NVAARGIHVDDLDLVVNVDPPADAKDYLHRGGRTARAGRAGSVVTLVTPDQRREVN 359


>gi|67458656|ref|YP_246280.1| ATP-dependent RNA helicase RhlE [Rickettsia felis URRWXCal2]
 gi|67004189|gb|AAY61115.1| ATP-dependent RNA helicase RhlE [Rickettsia felis URRWXCal2]
          Length = 353

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 121/293 (41%), Positives = 177/293 (60%), Gaps = 8/293 (2%)

Query: 76  LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           LIL PTRELA Q+     K   +Y +  A+LIGG P   Q  +L++   V+I TPGRI+D
Sbjct: 12  LILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQLKKNPKVIIGTPGRIID 71

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
           H NRG L ++ I I V+DE DRMLDMG    ++ I   +P  RQ L+FSATM   +  VS
Sbjct: 72  HLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFSATMPKHIIAVS 131

Query: 196 ENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
           + +L NP RI V   +  A  I  E   V+   ++S+   L +QL   + ++   IIF  
Sbjct: 132 QKYLNNPIRITVGATNKAAAEIKQESMHVSDKEKFSE---LTKQLGNREGSV---IIFVK 185

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            K++   L   L+ +     AIHG++ QR R +++ +F++   ++MVA+D+AARGLDIP 
Sbjct: 186 TKRSADQLAKMLKYENHKAEAIHGDLSQRQRERVILSFRKSNHRIMVATDVAARGLDIPH 245

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
             HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +D+    AI++L+ K
Sbjct: 246 TQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIRWRAIDRLVNK 298


>gi|118586721|ref|ZP_01544158.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163]
 gi|118432809|gb|EAV39538.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163]
          Length = 454

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 205/370 (55%), Gaps = 15/370 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L  ++V A+    + KPT +Q + IP ++   DV G +QTG+GKT +F+LP+   
Sbjct: 5   FGQFNLKTEIVKAIDGISFNKPTKVQKRIIPPIIAGRDVVGQSQTGSGKTHAFLLPIFNA 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--------NLTVALLIGGIPFEA 114
           L+     +   + +I  P+RELA Q+   F  + K+         +L +A  IGG     
Sbjct: 65  LDPS---LEETQAVITSPSRELAEQLYQAFRDFQKSLAAIDENFADLRIADYIGGTDRNK 121

Query: 115 QNKKLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           Q ++LER    + I TPGR+ D  ++  LL+N     V+DEAD  LDMGF+  +  I S 
Sbjct: 122 QIRQLERKQPQIAIGTPGRLKDFLSKNFLLVNQNRFFVVDEADMALDMGFLEDVDTIASA 181

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P   Q L+FSAT+ D+L    + +++NP   E+   +  A+TI++  +AT ++   K  
Sbjct: 182 MPDNLQMLVFSATIPDKLTPFLKRYMKNPLIEEIPVSTVVADTIDNYLLATKSK--DKNE 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           ++  LL  +++    ++F N K+ V  L H L+ QG  V  +HG I+ R R + +   K+
Sbjct: 240 VIFDLLTRKESYLT-LVFANTKERVHELAHFLDSQGLKVAEVHGGIEPRERRRTMKRIKK 298

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
              Q +VA+DLAARGLDI  V  V N D+P   E +IHR+GRTGR G  G A TL   ++
Sbjct: 299 QEFQYVVATDLAARGLDIQGVSEVINDDIPTDLEFFIHRVGRTGRNGLSGTAITLYGPDE 358

Query: 354 IKHIDAIEKL 363
              ++ +EKL
Sbjct: 359 EDKVEELEKL 368


>gi|85113073|ref|XP_964459.1| hypothetical protein NCU02803 [Neurospora crassa OR74A]
 gi|74654326|sp|Q7SEL0|PRP28_NEUCR RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp-28
 gi|28926242|gb|EAA35223.1| hypothetical protein NCU02803 [Neurospora crassa OR74A]
          Length = 728

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 127/389 (32%), Positives = 204/389 (52%), Gaps = 31/389 (7%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L  +++  V + GY +PTPIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L  + +  
Sbjct: 300 LPRRLLDIVKNVGYDEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISELP 359

Query: 68  ARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                     P  LIL PTREL  Q+    +K+      TV  ++GG   E Q   L  G
Sbjct: 360 PLTEYNKNDGPYALILAPTRELVQQIESEAKKFATPLGFTVVSIVGGHSLEEQAFALRNG 419

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177
           A++++ TPGR++D   R  L+ +     ++DEADRM+D GF   +  I   +P T     
Sbjct: 420 AEIIVATPGRLVDCLERRLLVFSQCCYTIMDEADRMIDQGFEEPLTKILDAMPVTNEKPD 479

Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
                               RQT++++ATM   ++++++ +L+ P  + +       +T+
Sbjct: 480 TDDAENPQLMSRYVDGKDRYRQTMMYTATMPPIVERIAKKYLRRPAIVTIGNAGEAVDTV 539

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
           E   V   +   K+   LQ++L S       I+F N K+N   +   ++  G+S   +HG
Sbjct: 540 EQR-VEFVSGEDKRKKRLQEILNSGQFKPPIIVFVNIKRNCDMVARDIKGMGYSAVTLHG 598

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           +  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y HRIGRTG
Sbjct: 599 SKTQEQREAALASLRNGQTDILVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTG 658

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RAG+ G A T +  ED   +  + ++I K
Sbjct: 659 RAGKSGVAITFLGPEDNDVLYDLRQIISK 687


>gi|158298027|ref|XP_318117.4| AGAP004711-PA [Anopheles gambiae str. PEST]
 gi|157014611|gb|EAA13218.5| AGAP004711-PA [Anopheles gambiae str. PEST]
          Length = 613

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 140/395 (35%), Positives = 215/395 (54%), Gaps = 29/395 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L   V+ A+      KP+PIQ++ IP VL   D+ GIA TG+GKT  FVLP++  
Sbjct: 176 FREMKLPKAVLAALAKRNIKKPSPIQVQGIPAVLAGRDLIGIAFTGSGKTLVFVLPIIMF 235

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q  D  + Y ++        +   L IGG+P
Sbjct: 236 CLEQELRLPFIKREGPYGLIICPSRELAKQTHDIIQYYCRHLQEAGMPEIRTVLAIGGVP 295

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
                  +++GA +++ TPGR++D  ++  + ++    L +DEADRM+DMGF   ++ I 
Sbjct: 296 VNDAIAIIQQGAHIMVATPGRLMDMLDKKLVTLDVCRYLCMDEADRMIDMGFEEDVRTIF 355

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + +N   + A ++       Y +   K
Sbjct: 356 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASMNVTQDVEYVKQEAK 413

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L + LQ   T    +IF  +K++V  +   L  +G    AIHG  DQ  R + + +F
Sbjct: 414 VVYLLECLQK--TPPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERYRSVESF 471

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +     ++VA+D+A++GLD PDV HV N+D+P+  ENY+HRIGRTGR+G  G A T + K
Sbjct: 472 RNQEKDVLVATDVASKGLDFPDVQHVINYDMPDDIENYVHRIGRTGRSGSKGLATTFINK 531

Query: 352 E-------DIKHIDAIEKLIE--KKVDWLNGDLSS 377
                   D+KH+     LIE  +KV    G+L S
Sbjct: 532 ATEQFVLLDLKHL-----LIEAQQKVPPFLGELCS 561


>gi|70945373|ref|XP_742513.1| RNA helicase [Plasmodium chabaudi chabaudi]
 gi|56521539|emb|CAH76133.1| RNA helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 649

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 140/379 (36%), Positives = 211/379 (55%), Gaps = 46/379 (12%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-----------TILEKGRA- 68
           Y K TPIQ  ++ +++ +HD+ G+AQTG+GKTA ++LP++           T  E+    
Sbjct: 250 YDKTTPIQKYSLSIIMNKHDLIGVAQTGSGKTAGYLLPIINHMLLNDPPKHTFYEENNKN 309

Query: 69  ------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                 RV +P  LIL PTRELA Q+  + +K+     +   +L GG   + Q   L++G
Sbjct: 310 SNYYYNRVCLPICLILAPTRELAVQIFYDSKKFCFETGIKSVVLYGGSNIKTQLSNLDKG 369

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS---------- 172
           AD+++ TPGR+ D   +GK+ +     LV+DEADRMLDMGF P I++I +          
Sbjct: 370 ADIIVATPGRLNDILEKGKIRLFLTSFLVLDEADRMLDMGFSPQIKSIVNDYDMPGNDND 429

Query: 173 ---------LVPFT-----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
                       +T     RQT++FSAT   E+Q +++++L N   + V    ST E I+
Sbjct: 430 SYMGENKMEYKKYTNEIVKRQTIMFSATFRKEIQVLAKDYLCNYTFLLVGKVGSTNEYIK 489

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
              V  Y++   KC+ L +LL S+++    IIF   K+    +   L  Q  +   IHG+
Sbjct: 490 QNLV--YSEEENKCSFLLKLL-SENSNGLTIIFVETKRKADIIERFLNNQKLNAVCIHGD 546

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
             Q  R + L  FK G   ++VA+D+AARGLDI ++ HV NFD+P+  ++YIHRIGRTGR
Sbjct: 547 KSQDERERALELFKRGVKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGR 606

Query: 339 AGRHGKAFTLVAKEDIKHI 357
           AG  G A + V  +D K+I
Sbjct: 607 AGNIGIATSFV-NDDNKNI 624


>gi|227540102|ref|ZP_03970151.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227239963|gb|EEI89978.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 406

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 215/372 (57%), Gaps = 9/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL+P +   +   GY+  TPIQ + IP++LQ  D+   AQTGTGKTAS++LP+L
Sbjct: 1   MKFTEFGLAPLLEEGLDSMGYLDATPIQGQAIPVILQDKDLIACAQTGTGKTASYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             +E  ++      TLIL PTRELA Q+             T   + GG   + +E Q +
Sbjct: 61  HKIEVRKSE--HVNTLILAPTRELALQIDQQIMGLAYFTGATSIAVYGGGDGMGYEQQKR 118

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +  G ++++ TPGR++ H   GK   + +E L++DEADRMLDMGF   I  I S +P  
Sbjct: 119 AIREGVNIIVATPGRLIAHMTSGKFDFSKLEHLILDEADRMLDMGFYEDILRIISYLPAK 178

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  +++ +++  L +P  I +   S  ++ I+      Y +  +K  L++ 
Sbjct: 179 RQNLLFSATMPPKIRSLAKQILHDPTEINIAI-SKPSDGIKQQAYLVYDE--QKTELIKT 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L S D+  + IIF ++K+ V  L H L+K+G +  A H +++Q  R ++++ FK   + 
Sbjct: 236 IL-SDDSYSSVIIFASKKEIVKRLTHELQKKGIAAEAFHSDLEQTQREEVMNKFKGKRLS 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+ +RG+D+  +  V N+DVP   E+Y+HR+GRT RA   G A T +  +D    
Sbjct: 295 VLVGTDVISRGIDVVGISLVINYDVPPDPEDYVHRVGRTARAATTGTAITFINTKDQNRF 354

Query: 358 DAIEKLIEKKVD 369
             IE LI  +++
Sbjct: 355 GRIEALIGNEIE 366


>gi|157871774|ref|XP_001684436.1| DEAD box RNA helicase [Leishmania major strain Friedlin]
 gi|68127505|emb|CAJ05468.1| putative ATP dependent DEAD-box helicase [Leishmania major strain
           Friedlin]
          Length = 389

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 128/373 (34%), Positives = 207/373 (55%), Gaps = 6/373 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   GY +PT IQ + I   L+  DV   A +GTGKT++F +    +
Sbjct: 19  FEAMGLKEDLLKGMYSFGYKQPTAIQKRFIMPFLKGRDVIAQASSGTGKTSAFCV---CL 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+      R  + LIL PTRELA Q  D     G +  LT    IGG   E   ++LE G
Sbjct: 76  LQACDPHTRETQALILSPTRELAVQTQDLCNNIGHHMGLTAYACIGGKSTEEDIRRLESG 135

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L +N ++ LV+DEAD ML  GF   I +I  +VP   Q +L
Sbjct: 136 VHIVSGTPGRVFDMIRRKSLRVNGLKTLVLDEADEMLGKGFKAQIHDIYRMVP-PLQIIL 194

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  ++ +++E F+  P  I V     T ++++  FV+   + +K   L++  L   
Sbjct: 195 VSATLPADVLEMTEKFMTEPTSILVKRDEITVDSVKQYFVSVDEEKNKFDVLME--LYDS 252

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+ + ++FCN +K V  L   + ++ F+V A+HG++ Q  R +I+  F+ G  ++++ +
Sbjct: 253 LTIAHAVVFCNTRKKVEQLAKKMTREKFAVSAMHGDMPQAERDEIMRQFRNGHSRVLITT 312

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V ++D+P   E YIHRIGRTGR GR G A T V  ++++ +  IE+
Sbjct: 313 DLWARGIDVERVSLVLSYDLPLAREQYIHRIGRTGRMGRTGLAITFVRHDELRLLRDIEQ 372

Query: 363 LIEKKVDWLNGDL 375
               +++ L  ++
Sbjct: 373 FYATQIEELPANI 385


>gi|195037653|ref|XP_001990275.1| GH18325 [Drosophila grimshawi]
 gi|193894471|gb|EDV93337.1| GH18325 [Drosophila grimshawi]
          Length = 684

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 131/352 (37%), Positives = 206/352 (58%), Gaps = 14/352 (3%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE----- 64
           P ++  V   G+ KP+PIQ +  P++L+ HD+ GIAQTGTGKT +F+LP +   E     
Sbjct: 276 PDLLAEVQKQGFAKPSPIQSQAWPILLKGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTP 335

Query: 65  ---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +G A V     L+L PTRELA Q+    +KY    N+    + GG   + Q   +ER
Sbjct: 336 RGTRGGANV-----LVLAPTRELALQIEMEVKKYSFR-NMKAVCVYGGGSRQMQISDVER 389

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+++ICTPGR+ D    G + ++ I  LV+DEADRMLDMGF P I+ +   +   RQT+
Sbjct: 390 GAEIIICTPGRLNDLVQAGVINVSTITYLVLDEADRMLDMGFEPQIRKVLLDIRPDRQTI 449

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT    ++++++++++NP ++ V +    A       +        K A L+  +++
Sbjct: 450 MTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVQQVIELLDDERDKFAALRSFVKN 509

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+FC +K    +L   L   GF    IHGN +QR R + +++ K G +++++A
Sbjct: 510 MAKSDKIIVFCGRKARADDLSSDLTLDGFDTQCIHGNREQRDREQAIADIKSGIVRILIA 569

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +D+A+RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + + + +ED
Sbjct: 570 TDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGRAGRRGTSISFITRED 621


>gi|17510309|ref|NP_491113.1| Vasa- and Belle-like Helicase family member (vbh-1) [Caenorhabditis
           elegans]
 gi|7332077|gb|AAF60764.1| Vasa- and belle-like helicase protein 1, isoform a, confirmed by
           transcript evidence [Caenorhabditis elegans]
          Length = 641

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 204/363 (56%), Gaps = 19/363 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G  P V+  V  +GY KPTP+Q  +IP +L   D+   AQTG+GKTA+F+LP++  
Sbjct: 122 FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQH 181

Query: 62  ILEKG-----------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           IL  G             R   P  L+L PTRELA Q+     K+    N+  A+L GG 
Sbjct: 182 ILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGR 241

Query: 111 P-FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
             +  Q  +L  G  +LI TPGR++D   +G + +     LV+DEADRMLDMGF P I+ 
Sbjct: 242 ENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRK 301

Query: 170 ITS--LVPFT-RQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATY 225
           I    + P T R T +FSAT   E+Q ++++FL+ N   + V    ST+E IE   +  +
Sbjct: 302 IVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLL--W 359

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
               +K + L ++L ++ +    ++F   K+    L + L +Q     +IHG++ Q  R 
Sbjct: 360 VNEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERE 419

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P  ++ Y+HRIGRTGR G  G A
Sbjct: 420 RNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIA 479

Query: 346 FTL 348
            + 
Sbjct: 480 TSF 482


>gi|302864863|ref|YP_003833500.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302567722|gb|ADL43924.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca
           ATCC 27029]
          Length = 635

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 124/352 (35%), Positives = 194/352 (55%), Gaps = 10/352 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DFA LGL  +VV  +   G   P  IQ  T+P  L   DV G  QTG+GKT +F LP++
Sbjct: 20  VDFASLGLPRQVVEVLARQGITTPFEIQRATLPDSLAGRDVLGRGQTGSGKTLAFGLPVI 79

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L ++ RAR   PR L+L PTRELA QV D     GK   + +   +GG+P++ Q   L
Sbjct: 80  ARLADRNRARPLHPRALVLVPTRELAMQVNDALMPLGKAVGVFLKTAVGGVPYDRQIDAL 139

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG ++++ TPGR+ D   RG   ++++EI V+DEAD+M DMGF+P +  + +  P   Q
Sbjct: 140 RRGVEIVVATPGRLGDLIERGVCRLDDVEITVLDEADQMADMGFLPEVTQLLAKTPADAQ 199

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQ 237
            LLFSAT+ +++  + + F+ +P        ++   T++H    +  + +++   ++  +
Sbjct: 200 RLLFSATLDNDVDTLVKRFMTDPVTHSTAPATAAVSTMDHHLLLIPPHDKFAVAASIAAR 259

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             ++       ++F   +  V  L   L   G     +HG   QR R K L+ F+EG   
Sbjct: 260 EGRT-------MLFARTQLGVDRLVEQLAAVGVRAGGLHGGKTQRMRTKTLAEFREGRTP 312

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++VA+D+AARG+ +  V  V + D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 313 VLVATDVAARGIHVDGVSLVLHVDPPKDPKDYLHRAGRTARAGESGAVATLV 364


>gi|302545222|ref|ZP_07297564.1| putative ATP-dependent RNA helicase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462840|gb|EFL25933.1| putative ATP-dependent RNA helicase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 489

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 131/349 (37%), Positives = 186/349 (53%), Gaps = 9/349 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L L   +   +   G   P PIQ  T+P  L   DV G AQTG+GKT +F L +L  
Sbjct: 8   FAELDLPDGLAAELALQGITVPFPIQGATLPSALTGRDVLGRAQTGSGKTLAFGLALLAR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV+D    Y +   L  A ++GG+    Q   L  G
Sbjct: 68  TAGQRAEPRRPLALVLVPTRELAQQVSDALAPYARRLRLRPATVVGGMSINRQANALRDG 127

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V+I TPGR+ D   RG   ++ + I V+DEAD+M DMGF+P +  +   VP   Q LL
Sbjct: 128 AEVVIATPGRLHDLIERGDCRLDQVRITVLDEADQMADMGFLPQVTRLLRQVPADGQRLL 187

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ +++ ++   FL +P    V+  +    T+EH  V   A   K+       + ++
Sbjct: 188 FSATLDNQISRLVREFLTDPALHSVDDSAGAVTTMEH-HVLHIADTDKRS------VATR 240

Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++G  I+F + K  V  L   L   G    A+HG   Q  R K L  FK G +  +V
Sbjct: 241 VAARDGRVIMFLDTKHAVDRLTRHLLANGVRAAALHGGKSQPQRTKTLERFKTGDVTALV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           A+++AARG+ + D+  V N D P+  ++Y+HR GRT RAG  G   TLV
Sbjct: 301 ATNVAARGIHVDDLDLVVNVDPPSDHKDYLHRGGRTARAGGSGSVVTLV 349


>gi|313891630|ref|ZP_07825237.1| putative DEAD-box ATP-dependent RNA helicase CshA [Dialister
           microaerophilus UPII 345-E]
 gi|329122052|ref|ZP_08250660.1| ATP-dependent RNA helicase DeaD [Dialister micraerophilus DSM
           19965]
 gi|313119908|gb|EFR43093.1| putative DEAD-box ATP-dependent RNA helicase CshA [Dialister
           microaerophilus UPII 345-E]
 gi|327466859|gb|EGF12375.1| ATP-dependent RNA helicase DeaD [Dialister micraerophilus DSM
           19965]
          Length = 416

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 125/363 (34%), Positives = 209/363 (57%), Gaps = 8/363 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+ P++   +   G + P PIQ + IP + +  ++ G AQTGTGKT +++LP++  
Sbjct: 4   FVSLGIIPEISEYLKKRGIINPMPIQKEVIPAIFKGRNIIGRAQTGTGKTLAYLLPLVQR 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++K  +  ++   +I+ PTREL+ Q+ D    + K  N+    +IGG   E Q +KL+R 
Sbjct: 64  IKKESSSTQV---IIMAPTRELSRQIYDVLSDFSKLLNVDSVGVIGGRTIENQIQKLKRN 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++DH  +  + +  ++ +V+DEAD+ML  GF   I+ +  + P  RQ L+
Sbjct: 121 PHIIVGTPGRLIDHIRKNTIDLTQVKTVVLDEADQMLAAGFREDIEILIDMTPKKRQILM 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+T+E +K++  +++ P   +V +    A T+E     T  +  K   L++ L +  
Sbjct: 181 LSATITEESKKLARKYVKAPLIADV-SEKEVASTVEQRIYET-TEAGKLKLLVKHLKEMN 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC-AIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             M   ++FCN ++    L   + +    V   +HG++ Q  R  ++  F +  IQ++VA
Sbjct: 239 PYM--AVVFCNTREGAYELAGEVYRATHMVVDQLHGDMTQGQRNHVIRQFSKAAIQVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLD+  V HVFN+D+P   + Y+HRIGRTGRAG  G A T V  +D   +  +E
Sbjct: 297 SDIAARGLDVEGVTHVFNYDIPTDLKYYVHRIGRTGRAGTKGMAITYVTPKDAVMLRKLE 356

Query: 362 KLI 364
           K I
Sbjct: 357 KSI 359


>gi|226246544|ref|NP_001139665.1| vasa protein [Strongylocentrotus purpuratus]
 gi|223056284|gb|ACM80369.1| vasa [Strongylocentrotus purpuratus]
          Length = 766

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 130/365 (35%), Positives = 204/365 (55%), Gaps = 12/365 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +  L   V+  V  A Y KPTP+Q   +P++    D+   AQTG+GKTA+F+LP++T 
Sbjct: 315 FEEAELDETVLSNVRKAHYAKPTPVQKYGMPIISCGRDLMACAQTGSGKTAAFLLPIITN 374

Query: 62  -ILEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            I   G       ++ P  LI+ PTRELA Q+ +   K+ +   +   ++ GG     Q 
Sbjct: 375 MITHGGCISTFNVIQEPLALIVSPTRELAIQIYNEARKFCRGTTIRPVVVYGGTSVSHQM 434

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--- 173
           ++ ++G  +L+ TPGR+ D   RG + +  ++ L++DEADRMLDMGF P IQ +      
Sbjct: 435 RECQKGCSILVATPGRMHDFVTRGYIGLGKLKFLILDEADRMLDMGFGPDIQRLIEHPHM 494

Query: 174 -VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                RQTL+FSAT  +E+Q+ +  +L +   + V      A  IE   V +  Q+ K+ 
Sbjct: 495 PAKGDRQTLMFSATFPNEVQEKAGEYLNDYLFLTVGRVGGAASDIEQ-RVFSVGQFDKRD 553

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L++ L   +D  +  ++F + K+N   L   L +  F   +IHG+  Q+ R + L +FK
Sbjct: 554 KLMEILRDQKDDDRT-LVFVSTKRNADFLASLLSQSEFPTTSIHGDRQQQEREEALRDFK 612

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+ +AARGLDIP V HV N+D+P+  + Y+HRIGRTGR G  G++ +    E
Sbjct: 613 TGKAPILVATSVAARGLDIPGVKHVVNYDLPSDIDEYVHRIGRTGRVGNLGRSTSFYDAE 672

Query: 353 DIKHI 357
              +I
Sbjct: 673 KDANI 677


>gi|195452524|ref|XP_002073391.1| GK13178 [Drosophila willistoni]
 gi|194169476|gb|EDW84377.1| GK13178 [Drosophila willistoni]
          Length = 395

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 208/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L  
Sbjct: 24  FNAMNLKEELLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQS 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     +R  + L L PTRELA Q+       G   N+   + IGG       +KL+ G
Sbjct: 84  LD---TTLRETQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 141 QHIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 201 ISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 259

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R +I+  F+ G  +++
Sbjct: 260 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 316 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRD 375

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 376 IEQYYSTQIDEMPMNVADL 394


>gi|324506599|gb|ADY42814.1| Eukaryotic initiation factor 4A [Ascaris suum]
 gi|324507947|gb|ADY43360.1| Eukaryotic initiation factor 4A [Ascaris suum]
          Length = 415

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 205/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  V   G+ KP+ IQ + I     + DV   AQ+GTGKTA+F + +L  
Sbjct: 44  FDDMNLKEDLLRGVYAFGFEKPSAIQQRAIVPCCMKRDVIAQAQSGTGKTATFSVSVLQN 103

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++    V+    L++ PTRELA Q+       G+   +     IGG       +KLE G
Sbjct: 104 IDESIPEVQ---ALVMAPTRELAQQIQKVMVSLGEYMGVKCHACIGGTNVRDDQRKLESG 160

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I  +   +P   Q +L
Sbjct: 161 VHIVVGTPGRVNDMIQRQSLQTSAIKMFVLDEADEMLSRGFKDQIYEVFKCMPNDVQVVL 220

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SATM  E+ +V+  F+ +P RI V     T E I   ++    +   +   C L Q + 
Sbjct: 221 LSATMPAEVLEVTNRFMNDPVRILVKKEELTLEGIRQFYIDVEKEEWKFETLCDLYQTVN 280

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IFCN ++ V  L + + K+ ++V  +HG+++Q  R  I+  F+ G+ +++
Sbjct: 281 VTQ-----AVIFCNTRRKVDYLANQMTKEKYTVSCMHGDMEQSERDLIMREFRSGSSRVL 335

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V ++D + +  
Sbjct: 336 ITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTEQDTRQLKD 395

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     +++ +  D+++L
Sbjct: 396 IESFYNTQIEEMPMDIANL 414


>gi|116618678|ref|YP_819049.1| superfamily II DNA/RNA helicase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097525|gb|ABJ62676.1| Superfamily II DNA and RNA helicase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 454

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 132/367 (35%), Positives = 208/367 (56%), Gaps = 15/367 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L  +V+ A+   G+ +PT +Q K IP VLQ  DV G +QTG+GKT +F++P+L  
Sbjct: 8   FGQFNLKKEVIDALSAIGFYEPTAVQAKLIPDVLQGRDVVGQSQTGSGKTHTFLIPILNQ 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
           LE+    V+    +I  P+RELAAQ+    +++    N +++++  +GG   + Q K+LE
Sbjct: 68  LEQDNEYVQ---AVITTPSRELAAQITKAMKEFSNQLNTDISISEFVGGTDKQRQIKQLE 124

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++I TPGRI D    G L ++ +  LV+DEAD  LDMGF+  +  I   +P   Q
Sbjct: 125 NHQPQIVIGTPGRIKDLVESGSLKLHAVHTLVVDEADMTLDMGFLNEVDYIAGAMPEGLQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSATM ++L+   + +L NP    +   +  A+TI++  +AT ++   K  ++ Q+L
Sbjct: 185 TLVFSATMPEKLKPFLKKYLDNPHFEAIPVSTVIADTIDNWLLATKSK--DKNDIIYQVL 242

Query: 240 QSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               T+ N    ++F N K+    +   L   G  V  IHG+I+ R R +++   +    
Sbjct: 243 ----TIGNPYLALVFANTKERAKEISSFLRGHGLKVAEIHGDIEPRERRRVMKAIQNLEY 298

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VA+DLAARG+DI  V HV N D+P   E ++HR+GRTGR G  G A TL   ++   
Sbjct: 299 QYVVATDLAARGIDIEGVSHVINDDIPAELEFFVHRVGRTGRNGLPGLAITLYGPDEENE 358

Query: 357 IDAIEKL 363
           +  +E L
Sbjct: 359 VAELEAL 365


>gi|327332290|gb|EGE74026.1| ATP-dependent RNA helicase [Propionibacterium acnes HL097PA1]
          Length = 491

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 190/347 (54%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LG+  ++V A+   G   P  IQI  IP  +   DV G A TG+GKT +F +P+L+ 
Sbjct: 22  FSALGVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSR 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L         PR LIL PTRELA Q+AD       +  L+  L+ GG+ +  Q K  +RG
Sbjct: 82  LSATPREDNRPRALILSPTRELAMQIADVLSPLASSMGLSTILIAGGMSYGPQTKAFKRG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR++D    G   ++ + + V+DEAD M ++GF+  + +I   +P   Q LL
Sbjct: 142 VDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRLL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + K+   ++  P   EV+    +  T+ H   A   +  +K  L+ ++    
Sbjct: 202 FSATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHH--AFQIKPHEKVGLMCEIANRS 259

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
               + I+F   ++    +   L + G    A+HG + Q +R ++L+ FK+G++ ++VA+
Sbjct: 260 ---GHTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVAT 316

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+ DV  V   D P   ++Y+HR GRT RAG  G   +LV
Sbjct: 317 DVAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLV 363


>gi|307328239|ref|ZP_07607417.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306886073|gb|EFN17081.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 503

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 141/436 (32%), Positives = 221/436 (50%), Gaps = 22/436 (5%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FADL + PK + A L A G   P PIQ  T+P  L   D  G  +TG+GKT +F L +L 
Sbjct: 77  FADLDM-PKQLLATLTAQGVSVPFPIQGATLPNTLAGRDALGRGRTGSGKTLAFGLALLA 135

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                RA  R P  L+L PTRELA QV D    Y ++  L +A ++GG+P   Q   L  
Sbjct: 136 RTAGQRAEPRQPLALVLVPTRELAQQVTDALTPYARSVKLRLATVVGGMPIGRQANVLRG 195

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+V++ TPGR+ D  +RG   +N + I V+DEAD+M DMGF+P +  +   V    Q +
Sbjct: 196 GAEVVVATPGRLKDLIDRGDCRLNQVAITVLDEADQMADMGFMPQVTALLDQVRPEGQRM 255

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   + ++   +L +P    V+  +    T+EH  +  +     +         +
Sbjct: 256 LFSATLDRNVDRLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVHGADKHRTT-------T 308

Query: 242 QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   + G  I+F + K  V  L   L   G    A+HG   Q  R + L+ FK G + ++
Sbjct: 309 EIAAREGRVIMFLDTKHAVDRLTQDLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVL 368

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA---KEDIKH 356
           VA+++AARG+ + D+  V N D P   ++Y+HR GRT RAG  G   TLV    + D+  
Sbjct: 369 VATNVAARGIHVDDLDLVVNIDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRDMTR 428

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +     ++ +     +G+ +     L +I  AQ   A    P+   +   +RRK++ +S+
Sbjct: 429 LMTAAGIVPRTTQVRSGEEA-----LGRITGAQ---APSGIPVTITAPVVERRKRSAASR 480

Query: 417 KSHIPLKESEKISKLQ 432
               P   + +++  Q
Sbjct: 481 GRRSPASAARRMTARQ 496


>gi|313812224|gb|EFS49938.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
          Length = 491

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 189/347 (54%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LG+  ++V A+   G   P  IQI  IP  +   DV G A TG+GKT +F +P+L+ 
Sbjct: 22  FSALGVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSR 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L         PR LIL PTRELA Q+AD       +  L+  L+ GG+ +  Q K   RG
Sbjct: 82  LSATPREDNRPRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFRRG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR++D    G   ++ + + V+DEAD M ++GF+  + +I   +P   Q LL
Sbjct: 142 VDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRLL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + K+   ++  P   EV+    +  T+ H   A   +  +K  L+ ++    
Sbjct: 202 FSATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHH--AFQIKPHEKVGLMCEIANRS 259

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
               + I+F   ++    +   L + G    A+HG + Q +R ++L+ FK+G++ ++VA+
Sbjct: 260 ---GHTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVAT 316

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+ DV  V   D P   ++Y+HR GRT RAG  G   +LV
Sbjct: 317 DVAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLV 363


>gi|258676573|gb|ACV87294.1| VASA DEAD-box protein [Phallusia mammillata]
          Length = 851

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 129/351 (36%), Positives = 205/351 (58%), Gaps = 13/351 (3%)

Query: 10  PKVVCA-VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGR 67
           P+ + A V  A Y  PTP+Q  ++P++L   D+   AQTG+GKTA+F+LP+LT ++  G 
Sbjct: 392 PETIAANVKRANYDSPTPVQKFSLPIILADRDLMACAQTGSGKTAAFLLPVLTNLVRTGL 451

Query: 68  ARV-----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           A       ++P+ +I+ PTREL  Q+     K+ +   +   +  GG     Q K+L++G
Sbjct: 452 ASSSFSEKQLPQAIIVGPTRELVYQIYLEARKFSRGTIIRPVVAYGGTSTNYQLKELQKG 511

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TR 178
             +LI TPGR++D  NRGK+ +++++ +++DEADRMLDMGF   I+ +           R
Sbjct: 512 CHLLIATPGRLMDFINRGKIGLSSVQYIILDEADRMLDMGFETEIRKLVDSPGMPAKNER 571

Query: 179 QTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            TL+FSAT  DE+QK++ +FL ++   + V         +    V    Q  K+  L++ 
Sbjct: 572 HTLMFSATFPDEIQKLAHDFLREDFLFLTVGRIGGACSDVTQ-VVLQVDQGDKRNKLIEL 630

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L    DT    ++F   K++   L  SL ++G+   +IHG+  Q+ R + L +FK G   
Sbjct: 631 LADVADTGSRTLVFVETKRSADFLACSLCQEGYPTTSIHGDRLQQEREEALRDFKSGKCP 690

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           ++VA+ +AARGLDIP V HV N+D+P+  + Y+HRIGRTGR G  G+A + 
Sbjct: 691 ILVATSVAARGLDIPKVEHVVNYDLPSEVDEYVHRIGRTGRCGNLGRATSF 741


>gi|227328700|ref|ZP_03832724.1| ATP-dependent RNA helicase DbpA [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 434

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 128/351 (36%), Positives = 204/351 (58%), Gaps = 8/351 (2%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84
           TP+Q  T+P VL   DV   A+TG+GKTA+F    + +L++        + L+L PTREL
Sbjct: 2   TPVQAATLPAVLSGADVRAKAKTGSGKTAAF---GIGLLDRIVVSDFTTQALVLCPTREL 58

Query: 85  AAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           A QV+    +  +   N+ +  L GG P   Q   L     +++ TPGRI DH  +  L 
Sbjct: 59  ADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSLVHAPHIVVGTPGRIQDHLRKQSLS 118

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           ++++++LV+DEADRMLDMGF   I ++ S  P  RQTLLFSAT  +E++++S    + P+
Sbjct: 119 LDSLKVLVLDEADRMLDMGFTDAIDDVISYTPTDRQTLLFSATYPEEIEQISARVQRQPQ 178

Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
           R EV         IE  F  T  +  ++  LL  +L       + ++FCN K++  ++  
Sbjct: 179 RFEV-ADGVEEPAIEQRFYETTKE--QRLPLLIAILGHYQP-ASCVVFCNTKRDCQSVFD 234

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
           +L+ +G SV A+HG+++QR R ++L  F   + +++VA+D+AARGLDI ++  V NF++ 
Sbjct: 235 ALDMRGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKELELVVNFELA 294

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
              E ++HRIGRTGRAG  G A +L   +++   + IE  +  ++ W   D
Sbjct: 295 FDPEVHVHRIGRTGRAGTKGLAVSLCTPQEMNRANLIEDYLGMRIKWTPSD 345


>gi|195330738|ref|XP_002032060.1| GM23722 [Drosophila sechellia]
 gi|194121003|gb|EDW43046.1| GM23722 [Drosophila sechellia]
          Length = 399

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 208/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L  
Sbjct: 28  FNAMNLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQS 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     +R  + L L PTRELA Q+       G   N+   + IGG       +KL+ G
Sbjct: 88  LD---TTLRETQILCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYG 144

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 145 QHIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 204

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 205 ISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R +I+  F+ G  +++
Sbjct: 264 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 320 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRD 379

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 380 IEQYYSTQIDEMPMNVADL 398


>gi|115444241|ref|NP_001045900.1| Os02g0150100 [Oryza sativa Japonica Group]
 gi|113535431|dbj|BAF07814.1| Os02g0150100 [Oryza sativa Japonica Group]
          Length = 460

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 142/401 (35%), Positives = 220/401 (54%), Gaps = 30/401 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF DL L   ++  + + G V+PTPIQ++ +P+VL   D+ GIA TG+GKT  FVLP++ 
Sbjct: 16  DFRDLRLPEPMLRKLREKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIM 75

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
           +  +    + +     P  +I+ P+RELA Q  D  E++           +   L IGG+
Sbjct: 76  VALQEEMMMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLVPLKEAGYPEIRPLLCIGGV 135

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              AQ   +++G  +++ TPGR+ D   + K+ ++N   L +DEADR++D+GF   I+ +
Sbjct: 136 DMRAQLDVVKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 195

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q  +++ L  P  + VN   + A  ++   V    +Y K
Sbjct: 196 FDHFKAQRQTLLFSATMPKKIQNFAKSALVKP--VIVNVGRAGAANLD---VIQEVEYVK 250

Query: 231 KCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A +  LL+  Q T    ++FC  K +V  +   L  +G    AIHG  DQ  R   + 
Sbjct: 251 EDARIIYLLECLQKTPPPVLVFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERENAIE 310

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T +
Sbjct: 311 FFKNGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 370

Query: 350 AKE-------DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
            K        D+KH      L+++    +   L+ LN PLE
Sbjct: 371 NKNQTETTLLDLKH------LLKEAKQRIPPVLAELNDPLE 405


>gi|327294865|ref|XP_003232128.1| eukaryotic initiation factor 4A-12 [Trichophyton rubrum CBS 118892]
 gi|326466073|gb|EGD91526.1| eukaryotic initiation factor 4A-12 [Trichophyton rubrum CBS 118892]
          Length = 399

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 124/379 (32%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L +
Sbjct: 27  FDDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQV 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     +R  + L+L PTRELA Q+       G   N+     IGG       +KLE G
Sbjct: 87  ID---TVLRESQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEHG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I +I   +P   Q ++
Sbjct: 144 QHVVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDIYRYLPPATQVVV 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 204 VSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTL- 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++
Sbjct: 263 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 319 ISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRD 378

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 379 IELYYSTQIDEMPMNVADL 397


>gi|19528517|gb|AAL90373.1| RE50350p [Drosophila melanogaster]
          Length = 399

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 208/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L  
Sbjct: 28  FNAMNLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQS 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     +R  + L L PTRELA Q+       G   N+   + IGG       +KL+ G
Sbjct: 88  LD---TTLRETQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYG 144

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 145 QHIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 204

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 205 ISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R +I+  F+ G  +++
Sbjct: 264 ----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 320 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRD 379

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 380 IEQYYSTQIDEMPVNVADL 398


>gi|83286284|ref|XP_730094.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23489719|gb|EAA21659.1| DEAD box polypeptide, Y chromosome-related [Plasmodium yoelii
           yoelii]
          Length = 908

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 140/379 (36%), Positives = 210/379 (55%), Gaps = 46/379 (12%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-----------TILE----- 64
           Y K TPIQ  ++ +++ +HD+ G+AQTG+GKTA ++LP++           T  E     
Sbjct: 342 YDKTTPIQKYSLSIIMNKHDLIGVAQTGSGKTAGYLLPIINHMLLNDPPKHTFYEDNNKN 401

Query: 65  --KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                 RV +P  LIL PTRELA Q+  + +K+     +   +L GG   + Q   L++G
Sbjct: 402 SNYYYNRVCLPICLILAPTRELAVQIFYDSKKFCFETGIKSVVLYGGSNIKTQLSNLDKG 461

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS---------- 172
           AD+++ TPGR+ D   +GK+ +     LV+DEADRMLDMGF P I++I +          
Sbjct: 462 ADIIVATPGRLNDILEKGKIRLFLTSFLVLDEADRMLDMGFSPQIKSIVNDYDMPGNDND 521

Query: 173 ---------LVPFT-----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
                       +T     RQT++FSAT   E+Q +++++L N   + V    ST E I+
Sbjct: 522 SYMGENKMEYKKYTNEIVKRQTIMFSATFRKEIQVLAKDYLCNYTFLLVGKVGSTNEYIK 581

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
              V  Y++   KC+ L +LL S+++    IIF   K+    +   L  Q  +   IHG+
Sbjct: 582 QNLV--YSEEENKCSFLLKLL-SENSNGLTIIFVETKRKADIIERFLNNQKLNAVCIHGD 638

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
             Q  R + L  FK G   ++VA+D+AARGLDI ++ HV NFD+P+  ++YIHRIGRTGR
Sbjct: 639 KSQDERERALELFKRGVKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGR 698

Query: 339 AGRHGKAFTLVAKEDIKHI 357
           AG  G A + V  +D K+I
Sbjct: 699 AGNIGIATSFV-NDDNKNI 716


>gi|325919452|ref|ZP_08181477.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
 gi|325550072|gb|EGD20901.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
          Length = 438

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 134/371 (36%), Positives = 203/371 (54%), Gaps = 14/371 (3%)

Query: 1   MDFADLGLSPKVV----CAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFV 56
           M F  L LSP+++     A+  AG+  PTPIQ + I  +LQ  D+  +AQTG+GKT ++ 
Sbjct: 10  MSFDHLDLSPQLLPAFTAALARAGHHTPTPIQQQAIQPMLQGRDLIAMAQTGSGKTLAYA 69

Query: 57  LPMLTILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIP 111
           LP+L   ++  A    PR    L+L PTRELAAQV D   +   +    L +    GG  
Sbjct: 70  LPLLQ--QRCLAPETAPRVLGALVLVPTRELAAQVEDTLHQLAAHLPRRLKIVTATGGSS 127

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q   L  GAD+++ TPGR+LD  +   L ++ +  LV+DEADR+L++GF   +  I 
Sbjct: 128 INPQLLALRGGADIVVATPGRLLDLVDHNALRLSEVATLVLDEADRLLELGFGAELDRIL 187

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +L+P  RQ++LFSAT    +  +++  L++P RI +      A  IE   +A  A   ++
Sbjct: 188 ALLPAQRQSVLFSATFPPGIASLAKRRLRDPLRITIVATPDAAPAIEQRAIAVDA--GQR 245

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL+ LLQ +    + ++F   +     +   L K G +   +HG + Q  R + L  F
Sbjct: 246 TQLLRHLLQ-EHGWSHVLVFVASRHTAEKVAEKLTKTGINAQPLHGELSQGRRERTLYAF 304

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K+  +Q++VA+DLA RG+DI  +  V N+D+P    +Y HRIGRT RAG  G A + V+ 
Sbjct: 305 KQREVQVLVATDLAGRGIDIDALPAVINYDLPRSTVDYTHRIGRTARAGASGVAISFVSA 364

Query: 352 EDIKHIDAIEK 362
           E       IEK
Sbjct: 365 ESQPQWRLIEK 375


>gi|302665674|ref|XP_003024446.1| hypothetical protein TRV_01409 [Trichophyton verrucosum HKI 0517]
 gi|291188499|gb|EFE43835.1| hypothetical protein TRV_01409 [Trichophyton verrucosum HKI 0517]
          Length = 940

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 135/396 (34%), Positives = 209/396 (52%), Gaps = 43/396 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+P ++ A+   G+  PTPIQ KTIPL+L   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 94  FQAMGLNPTLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 153

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 154 LRNHSTKV-GARGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMASN 212

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I   V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 213 PDIIIATPGRFLHLKVEMNLDLSSIRYAVFDEADRLFEMGFAAQLTEILHALPTSRQTLL 272

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
           FSAT+   L + +   LQ P  I ++  S  +  ++  F  T     K+ ALL  L    
Sbjct: 273 FSATLPKSLVEFARAGLQEPTLIRLDADSKISPDLQSAFF-TVKSADKEGALLHILHDLI 331

Query: 239 --------------LQSQD-----------------------TMKNGIIFCNQKKNVVNL 261
                          ++Q+                       T  + I+F   K +V  +
Sbjct: 332 KIPTGETEAGKLAKKEAQEGKQGTSKKRKRADMKGPGAHGTPTEHSTIVFVATKHHVEYI 391

Query: 262 CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321
            + L   GF+V   +G+++Q +R   + N + G   ++V +D+AARG+DIP + +V N+D
Sbjct: 392 ANLLRHSGFAVSYAYGSLNQTARKIQVQNLRAGISNILVVTDVAARGIDIPVLANVINYD 451

Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            P++ + YIHR+GRT RAG+ G +++LV   D  ++
Sbjct: 452 FPSQPKIYIHRVGRTARAGQKGWSYSLVRDSDAPYL 487


>gi|71005310|ref|XP_757321.1| hypothetical protein UM01174.1 [Ustilago maydis 521]
 gi|74703958|sp|Q4PFD9|PRP5_USTMA RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|46096725|gb|EAK81958.1| hypothetical protein UM01174.1 [Ustilago maydis 521]
          Length = 1156

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 126/362 (34%), Positives = 206/362 (56%), Gaps = 9/362 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL    +  +   GY  PTPIQ + +P ++   D+ G+A+TG+GKT +F+LPM   
Sbjct: 478 WSHCGLPASCLDVIKRLGYSAPTPIQSQAMPAIMSGRDIIGVAKTGSGKTMAFLLPMFRH 537

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++  R       P  +I+ PTRELA Q+      + K   L  A + GG P   Q  +++
Sbjct: 538 IKDQRPVEPSEGPVGIIMTPTRELAVQIYREMRPFIKALGLRAACVYGGAPISEQIAEMK 597

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           + AD+++ TPGR++D    N G++  +  +  LV+DEADRM DMGF P +  I + +   
Sbjct: 598 KTADIVVATPGRLIDLLTANSGRVTNLYRVTYLVLDEADRMFDMGFEPQVMKILNNIRPD 657

Query: 178 RQTLLFSATMTDELQKVSENFLQN-PKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           RQT+LFSAT   +++ ++   L+N P  I V   S  A  IE   V   ++ +K   LL+
Sbjct: 658 RQTVLFSATFPKQMESLARKVLKNKPLEITVGGRSVVAAEIEQ-IVEVRSEDTKFHRLLE 716

Query: 237 QL--LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            L  L +++     +IF ++++   +L   L ++G+   ++HG  DQ  R + +S+FK G
Sbjct: 717 ILGELYNREKDARTLIFVDRQEAADDLLKDLIRKGYVTMSLHGGKDQVDRDETISDFKAG 776

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++ A+ +AARGLD+  +  V N+DVPN  E+Y+HR GRTGRAG+ G   T +  E  
Sbjct: 777 NVPIVTATSVAARGLDVKQLKLVINYDVPNHMEDYVHRAGRTGRAGQKGTCITFITPEQD 836

Query: 355 KH 356
           ++
Sbjct: 837 RY 838


>gi|68072041|ref|XP_677934.1| RNA helicase [Plasmodium berghei strain ANKA]
 gi|56498231|emb|CAH99198.1| RNA helicase, putative [Plasmodium berghei]
          Length = 855

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 140/379 (36%), Positives = 210/379 (55%), Gaps = 46/379 (12%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-----------TILE----- 64
           Y K TPIQ  ++ +++ +HD+ G+AQTG+GKTA ++LP++           T  E     
Sbjct: 289 YDKTTPIQKYSLSIIMNKHDLIGVAQTGSGKTAGYLLPIINHMLLNDPPKHTFYEDNNKN 348

Query: 65  --KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                 RV +P  LIL PTRELA Q+  + +K+     +   +L GG   + Q   L++G
Sbjct: 349 SNYYYNRVCLPICLILAPTRELAVQIFYDSKKFCFETGIKSVVLYGGSNIKTQLSNLDKG 408

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS---------- 172
           AD+++ TPGR+ D   +GK+ +     LV+DEADRMLDMGF P I++I +          
Sbjct: 409 ADIIVATPGRLNDILEKGKIRLFLTSFLVLDEADRMLDMGFSPQIKSIVNDYDMPGNDND 468

Query: 173 ---------LVPFT-----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
                       +T     RQT++FSAT   E+Q +++++L N   + V    ST E I+
Sbjct: 469 SYMGENKMEYKKYTNEIVKRQTIMFSATFRKEIQVLAKDYLCNYTFLLVGKVGSTNEYIK 528

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
              V  Y++   KC+ L +LL S+++    IIF   K+    +   L  Q  +   IHG+
Sbjct: 529 QNLV--YSEEENKCSFLLKLL-SENSNGLTIIFVETKRKADIIERFLNNQKLNAVCIHGD 585

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
             Q  R + L  FK G   ++VA+D+AARGLDI ++ HV NFD+P+  ++YIHRIGRTGR
Sbjct: 586 KSQDERERALELFKRGVKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGR 645

Query: 339 AGRHGKAFTLVAKEDIKHI 357
           AG  G A + V  +D K+I
Sbjct: 646 AGNIGIATSFV-NDDNKNI 663


>gi|323338349|gb|EGA79576.1| Dbp10p [Saccharomyces cerevisiae Vin13]
          Length = 581

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 133/418 (31%), Positives = 218/418 (52%), Gaps = 53/418 (12%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GLS  V+  +   G+ +PTPIQ KTIPL+LQ  D+ G+A+TG+GKTA+F+LPM+  
Sbjct: 43  FPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEK 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    ++   R +IL P+RELA Q  + F+ + +   L   LL GG   E Q   +   
Sbjct: 103 LKSHSGKIG-ARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMTN 161

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV+I TPGR L       L + ++E +V DEADR+ +MGF   +  + + +P TRQTLL
Sbjct: 162 PDVIIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLASLPTTRQTLL 221

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--------------------- 221
           FSAT+ + L    +  L NP  + ++  +  +E +E  F                     
Sbjct: 222 FSATLPNSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNADREANLLYILQEIIK 281

Query: 222 --VATYAQYSK--------------------------KCALLQQLLQSQDTM---KNGII 250
             +AT  Q  K                          K    +Q + + + +   K  I+
Sbjct: 282 IPLATSEQLQKLQNSNNEADSDSDDENDRQKKRRNFKKEKFRKQKMPAANELPSEKATIL 341

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F   + +V  +   L   G+ +  I+G +DQ +R + L NF+ G   ++V +D+AARG+D
Sbjct: 342 FVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLYNFRAGLTSILVVTDVAARGVD 401

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           IP + +V N+ +P  ++ ++HR+GRT RAG  G A+++VA+ ++ ++  +E  + +K+
Sbjct: 402 IPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLLDLELFLGEKI 459


>gi|156105935|gb|ABU49329.1| vasa [Ilyanassa obsoleta]
          Length = 411

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 126/349 (36%), Positives = 207/349 (59%), Gaps = 18/349 (5%)

Query: 39  HDVCGIAQTGTGKTASFVLPMLT-ILEKG-----RARVRMPRTLILEPTRELAAQVADNF 92
            D+ G AQTG+GKTA+F+LP+LT ++++G      + V+ P+ +++ PTRELA Q+    
Sbjct: 3   RDLMGCAQTGSGKTAAFLLPVLTEMMKEGLTCSPMSVVKEPQAIVVAPTRELADQIYKEA 62

Query: 93  EKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVI 152
            K+    +L   ++ GG+    Q ++++ GA++++ TPGR+LD   RGK+ +  ++ L++
Sbjct: 63  RKFSTGTDLRPVVVYGGVAVNHQLRQVDLGANLVVGTPGRLLDFIERGKIGLGKVKYLIL 122

Query: 153 DEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVN 208
           DEADRMLDMGF P I+ +   +       RQTLLFSAT   ++Q+++ +F+++   I V 
Sbjct: 123 DEADRMLDMGFEPSIRKLVDGLGMPPKSQRQTLLFSATFKPDIQQLAADFMKDYLFITVG 182

Query: 209 TPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
                   +E  F+       +K   L  +L +  T +  ++F  QK+N   L   L + 
Sbjct: 183 IVGGACTDVEQTFLEV--DRVQKREYLCDILNTSGTNRV-LVFVGQKRNADFLASYLSQS 239

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G+    IHG+  QR R + L +FK G   +++A+++AARGLDIPDV HV N+D+P   + 
Sbjct: 240 GYPTTTIHGDRLQREREEALRDFKSGKSPVLIATNVAARGLDIPDVTHVVNYDLPMDIDE 299

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA--IEKLIEKKV---DWLN 372
           Y+HRIGRTGR G  GKA +  + +   ++ +  +  L+E K    DWL+
Sbjct: 300 YVHRIGRTGRCGNLGKATSFYSHDTDANLASNLVRILMEAKQEVPDWLD 348


>gi|321464143|gb|EFX75153.1| hypothetical protein DAPPUDRAFT_226459 [Daphnia pulex]
          Length = 447

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 139/392 (35%), Positives = 218/392 (55%), Gaps = 30/392 (7%)

Query: 3   FADLGLSPKV--VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           F +LGL  ++   C +L   + +PTPIQ + IPL LQ  DV G+A+TG+GKT +F LPML
Sbjct: 27  FVELGLRSELEEACNLLK--WTEPTPIQREAIPLALQGRDVIGLAETGSGKTGAFTLPML 84

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     R+     LIL PTRELA Q+++  E  G +  +  A+++GGI   +Q+  L 
Sbjct: 85  HSLLSNPQRLF---GLILTPTRELAFQISEQIEALGSSIGVKCAVIVGGIDMISQSLMLA 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++I TPGR++DH    K    N++ L   E D++L              +P  R+T
Sbjct: 142 KKPHIVIATPGRLVDHLENTKGF--NLKSLKYLEVDKILKS------------IPRERRT 187

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATMT ++QK+    L NP R+++++   T + +   +V  +     K   L  LL 
Sbjct: 188 LLFSATMTSKVQKLQRASLVNPVRVQISSKYQTVDKLLQYYV--FIPLKMKDVYLVHLL- 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + ++FC+   + +     L   G S   +HG + Q  R+  L+ FK     +++
Sbjct: 245 NEAAGHSVMVFCSTCSSTLRTSLLLRALGISAVPLHGQMTQNKRLAALNKFKARNRGVLL 304

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR GKA + V + D++    I
Sbjct: 305 ATDVASRGLDIPHVDWVINYDIPTHSKDYIHRVGRTARAGRSGKAISFVTQYDVELYQRI 364

Query: 361 EKLIEKKVDWLN---GDLSSLNPPLEKIDIAQ 389
           E L+ K++       GD+ SL    E++  AQ
Sbjct: 365 EHLLGKQLPLYGLEEGDVMSLQ---ERVAEAQ 393


>gi|5059027|gb|AAD38874.1|AF110007_1 p68 RNA helicase [Molgula oculata]
 gi|5059032|gb|AAD38877.1|AF110009_1 p68 RNA helicase [Molgula oculata]
          Length = 618

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 137/403 (33%), Positives = 214/403 (53%), Gaps = 26/403 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    +   +   G+  PTPIQ    P  +  HD  GIA+TG+GKT +F+LP +  
Sbjct: 149 FEEAGFPDYIYGTLSKQGFSDPTPIQAIGWPNAMSGHDCVGIAKTGSGKTLAFILPAIVH 208

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L+ G      P  L+L PTRELA QV     ++G + ++    + GG     Q 
Sbjct: 209 INAQPYLDPGDG----PIVLVLCPTRELAQQVQQVAAEFGSSSHIKNTCVYGGASKGPQL 264

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + LERG +++I TPGR++D   + K  +     LV+DEADRMLDMGF P I+ I S +  
Sbjct: 265 RDLERGCEIVIATPGRLIDFLEQKKTNLRRCTYLVLDEADRMLDMGFEPQIRKIISQIRP 324

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCAL 234
            RQTL++SAT   E+ K++ +FL +   ++V    ST  +  H    +    Q  +K   
Sbjct: 325 DRQTLMWSATWPKEVSKLAADFLGDFVHVQV---GSTGLSANHNILQIVDVCQPMEKDEK 381

Query: 235 LQQLLQS--QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           L +L++    ++    IIF   K+    L  ++ + G+    IHG+  Q  R  +L+ F+
Sbjct: 382 LMRLMEEIMGESENKTIIFTETKRRCDELTRTMRRDGWPAMCIHGDKSQPERDWVLNEFR 441

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+D+A+RGLD+ DV  V N+D P++ E+Y+HRIGRT RA + G A+T    +
Sbjct: 442 SGRSPILVATDVASRGLDVSDVKFVINYDFPSQCEDYVHRIGRTARAEQKGTAYTFFTYD 501

Query: 353 DIKHI-DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           + K   D I  L E K         ++NP L ++ +   N+ +
Sbjct: 502 NAKQAKDLIAILQEAK--------QAVNPKLMELGMTFRNYGK 536


>gi|296083374|emb|CBI23263.3| unnamed protein product [Vitis vinifera]
          Length = 628

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 127/339 (37%), Positives = 196/339 (57%), Gaps = 6/339 (1%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILEKGRARVRM---PRTL 76
           + +P+PIQ    P +L   D  GIA TG+GKT +F +P M+ +L K +++      P  L
Sbjct: 228 FSQPSPIQSHAWPFLLDHRDFIGIAATGSGKTLAFGVPAMMHVLSKRKSKTSKGVNPLCL 287

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           +L PTRELA Q++D   + GK+  +    L GG     Q   L+ G D++I TPGR+ D 
Sbjct: 288 VLSPTRELAQQISDVLCEAGKHCGVKSVCLYGGTSKGPQISSLKSGVDIVIGTPGRLKDL 347

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
              G   +  +  +V+DEADRMLDMGF P +++I S     RQ ++FSAT    + ++++
Sbjct: 348 IEMGVCCLTEVSFVVLDEADRMLDMGFEPEVRSILSQTCPARQMVMFSATWPLPVHQLAQ 407

Query: 197 NFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI-IFCNQ 254
            F+  NP ++ + +    A       V      S+   LL  L +   + +N + +F   
Sbjct: 408 EFMDPNPVKVVIGSEDLAANHDVMQIVEVLDDRSRDERLLTLLGKYHKSQRNRVLVFVLY 467

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           KK    + + L+++G++V +IHG+  Q++R   LS FK+G+  LM+A+D+AARGLDIPDV
Sbjct: 468 KKEAARVENMLQRRGWNVVSIHGDKAQQARTAALSLFKKGSCPLMIATDVAARGLDIPDV 527

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             V N+  P   E+Y+HRIGRTGRAG+ G A T   +E+
Sbjct: 528 EVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFMQEN 566


>gi|145478351|ref|XP_001425198.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124392267|emb|CAK57800.1| unnamed protein product [Paramecium tetraurelia]
          Length = 472

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 135/367 (36%), Positives = 208/367 (56%), Gaps = 8/367 (2%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRT 75
           ++ AG+  PTPIQ ++  + L  HD+ GIAQTG+GKT +F+LP +  +     +   P+ 
Sbjct: 85  IVKAGFPSPTPIQAQSWSIGLTGHDLIGIAQTGSGKTLAFLLPAIIHILAQLKQNSDPQC 144

Query: 76  LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           LI+ PTREL  Q+ + F K+     L  A L GG     Q  +L +   +LI  PGR++D
Sbjct: 145 LIMAPTRELTHQIYEQFIKFSVGSGLKAACLFGGQEKYIQKNQLNQHPHILIACPGRLID 204

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
               G   +  I  LV+DEADRMLDMGF P I+ I +     RQT+LFSAT   E+Q ++
Sbjct: 205 LVESGCTTLKGITFLVLDEADRMLDMGFEPSIRKIVAQTRAERQTMLFSATWPKEVQSLA 264

Query: 196 ENFL-QNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
            +F  Q P  I++ +   +S  +  +   + T  Q  +K   L+++L+S    K  +IFC
Sbjct: 265 LDFCTQQPIHIQIGSLDLTSNRQIQQKVLILTKEQKEEK---LREILKSLGP-KKILIFC 320

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             K     L   L ++G    ++HG+  Q  R  ++++FK G   ++VA+D+A+RGLDI 
Sbjct: 321 QTKMKCDQLQLYLIQEGMRCKSLHGDKRQSERDFVMNSFKRGDTTVLVATDVASRGLDIK 380

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDAIEKLIEKKVDWL 371
           D+  V NFD+P   E+Y+HRIGRTGRAG  G + +L  + ED K    +  ++ +  + +
Sbjct: 381 DIEFVINFDMPKLIEDYVHRIGRTGRAGAQGVSISLFDSYEDAKLAGDLVGVLRESQNEV 440

Query: 372 NGDLSSL 378
             +LS L
Sbjct: 441 PSELSRL 447


>gi|226487072|emb|CAX75401.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum]
          Length = 647

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 141/397 (35%), Positives = 221/397 (55%), Gaps = 25/397 (6%)

Query: 34  LVLQRHDVCGIAQTGTGKTASFVLP-MLTILEKGRA-RVRMPRTLILEPTRELAAQVADN 91
           + L   DV GIAQTG+GKTA+F+LP ++ I+ + R  R   P  L+L PTRELA QV   
Sbjct: 1   MALSGRDVVGIAQTGSGKTATFLLPAVIHIMAQPRLLRNEGPICLVLVPTRELAQQVLSV 60

Query: 92  FEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILV 151
            +++    +L      GG     Q +++++G ++ I TPGR++D     + L++ +  LV
Sbjct: 61  AKEFADAASLRAICFYGGSAKGTQLREMQKGGEICIATPGRLIDFIRVQRNLLSRVTYLV 120

Query: 152 IDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           +DEADRMLDMGF P I+ I S V   RQTL++SAT   E+Q ++  FL +  ++ + + S
Sbjct: 121 LDEADRMLDMGFEPQIRKILSHVRPDRQTLMWSATWPKEVQTLAREFLTDYIQVNIGSVS 180

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
             A       V     + K+  L++ LL S    +  ++F   K+    L +SL ++GF 
Sbjct: 181 LHANPNITQIVEIMDDWRKEQRLIE-LLSSFGRSRT-LVFVETKRRTDQLTNSLRRRGFY 238

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
           V A+HG   QR R   L++FK G + +++A+D+A+RGLDI ++ +V NFD PN+ E+YIH
Sbjct: 239 VEAMHGGKQQRDRELTLASFKSGRMNILIATDVASRGLDIDNIEYVVNFDFPNQTEDYIH 298

Query: 332 RIGRTGRAGRHGKAFTLVAKEDIKHI-DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           RIGRT R+ + G AFT    ++ +   D IE L E   +        + P L ++     
Sbjct: 299 RIGRTARSDKRGTAFTFFTYKNARQARDLIEILDEANQE--------ITPELIQL-AGMS 349

Query: 391 NHARKNNPI-----------PQKSTGFDRRKKNYSSQ 416
           ++ RK+ P+           P + TGF     ++ SQ
Sbjct: 350 SYLRKSGPLKKNPPAFQQKPPGRITGFGNSSSSFPSQ 386


>gi|222423183|dbj|BAH19569.1| AT4G16630 [Arabidopsis thaliana]
          Length = 686

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 135/372 (36%), Positives = 200/372 (53%), Gaps = 15/372 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  ++ A    GY KPTPIQ   IPL L   D+C  A TG+GKTA+F LP L  
Sbjct: 169 FMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLER 228

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     RV   R LIL PTRELA Q+    +   +  ++   L++GG+    Q   L   
Sbjct: 229 LLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSM 288

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D+++ TPGR++DH  N   + ++++ +L++DEADR+L  GF   I  +  L P  RQT+
Sbjct: 289 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTM 348

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVN-----TPSSTAETIEHCFVATYAQYSKKCALLQ 236
           LFSATMT+E++++ +  L  P R+  +      P  T E +    +    + +++  LL 
Sbjct: 349 LFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVR---IRRTREANQEAVLLS 405

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L ++      IIF   K+    L       G     +HGN+ Q  R+  L  F++  +
Sbjct: 406 --LCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEV 463

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             ++A+D+AARGLDI  V  V N+  P   ++Y+HR+GRT RAGR G A T V   D   
Sbjct: 464 DFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSD--- 520

Query: 357 IDAIEKLIEKKV 368
             ++ K+I KKV
Sbjct: 521 -RSLLKVIAKKV 531


>gi|19075484|ref|NP_587984.1| U5 snRNP-associated protein Prp28 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|74654533|sp|Q9Y7T7|PRP28_SCHPO RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|4539604|emb|CAB40015.1| U5 snRNP-associated protein Prp28 (predicted) [Schizosaccharomyces
           pombe]
          Length = 662

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 121/376 (32%), Positives = 207/376 (55%), Gaps = 25/376 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + GL  +++  +    Y +P+ IQ   IP++LQR D+ GIA+TG+GKTA+F++P++ 
Sbjct: 250 NWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLII 309

Query: 62  ILEK----GRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + K      + + + P  ++L PTRELA Q+     K+ +        ++GG  FE Q+
Sbjct: 310 AISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQS 369

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            ++ +GA +++ TPGR+LD   R   +++    +V+DEADRMLDMGF   +  I S +P 
Sbjct: 370 FQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPS 429

Query: 177 T-------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           +                   RQT++FSAT+   +  +++++L  P  + +       + +
Sbjct: 430 SNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRV 489

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
           E   V   +  SKK   ++++L+S       IIF N K+N+  +   L   G+    +HG
Sbjct: 490 EQR-VEMISDDSKKWRRVEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHG 548

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           +  Q  R + +   +  T  ++VA+D+A RG+DIP+V  V N+++    E+Y HRIGRTG
Sbjct: 549 SKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTG 608

Query: 338 RAGRHGKAFTLVAKED 353
           RAG+ G A T +  ED
Sbjct: 609 RAGKSGTAITFLGPED 624


>gi|156848475|ref|XP_001647119.1| hypothetical protein Kpol_1036p3 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160385736|sp|A7TEF4|FAL1_VANPO RecName: Full=ATP-dependent RNA helicase FAL1
 gi|156117803|gb|EDO19261.1| hypothetical protein Kpol_1036p3 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 399

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 126/383 (32%), Positives = 212/383 (55%), Gaps = 14/383 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+  P+ IQ + I  ++   DV   AQ+GTGKTA+F + ML  
Sbjct: 25  FESMNLKDDLLRGIYGYGFEAPSAIQSRAITQIISGTDVIAQAQSGTGKTATFTIGMLQA 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER- 121
           ++  R  ++    L+L PTRELA+Q+       G   N+    + GG   +    ++++ 
Sbjct: 85  IDLKRKDLQ---ALVLSPTRELASQINQVVSNLGDYMNVQSYAMTGGKTMKDDLNRMQKN 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML--DMGFIPYIQNITSLVPFTRQ 179
           G  V+  TPGR+LD F R  L   N+++L++DEAD +L   +GF   I +I + +P   Q
Sbjct: 142 GCQVVSGTPGRVLDMFKRHLLNTRNVQMLILDEADELLGESLGFKQQIYDIFTKLPAACQ 201

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQ 236
            ++ SATM+ ++ +V++ F+ +P +I V     + E I+  +V    +   +   C L  
Sbjct: 202 VVVVSATMSKDILEVTKKFMSDPVKILVKRDEISLEGIKQYYVNVEKEDWKFDTLCDLYD 261

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L     T+   +IFCN KK V  L   L +  F+V ++HG++ Q  R K++S+F+ G  
Sbjct: 262 SL-----TITQCVIFCNTKKKVDWLSAKLTQSNFAVVSMHGDMKQEDRNKVMSDFRSGHS 316

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   +   D+  
Sbjct: 317 RVLISTDVWARGIDVQQVSLVINYDIPEIMENYIHRIGRSGRFGRKGVAINFITSSDLSK 376

Query: 357 IDAIEKLIEKKVDWLNGDLSSLN 379
           +  IEK    K+  +  DLS+++
Sbjct: 377 MKEIEKYYRIKISPVPADLSTIS 399


>gi|113969304|ref|YP_733097.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113883988|gb|ABI38040.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 451

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 150/439 (34%), Positives = 235/439 (53%), Gaps = 30/439 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           + FA+LG++   +C+VL A    PT +Q   IP +L   DV  ++QTG+GKT +F LP+ 
Sbjct: 17  LTFAELGVN-AALCSVLPAALKHPTRVQQLAIPAILAGRDVLALSQTGSGKTLAFGLPLL 75

Query: 60  ------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVAL 105
                       L   E   +     + L+L PTRELA QV           + +L + L
Sbjct: 76  QAIHQQLQQQVGLAGAESVPSLASNAQALVLVPTRELAQQVTTALHALASKLSSSLKIQL 135

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           L GGI  E Q  +L     +++ TPGR+LD   +  + +++I+ LV+DEADR+L+MGF P
Sbjct: 136 LCGGIAQEEQLAELAAKPQLVVATPGRLLDLCTQSHISLDSIKYLVLDEADRLLEMGFWP 195

Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEH--CFV 222
            +Q + +++   +QTLLFSAT+ + L  ++   L  NP R+E +T ++ A  IE    FV
Sbjct: 196 DVQKLMAMMLKRKQTLLFSATLPEALDALAGKLLTNNPLRVEASTRNAIAAEIEERLYFV 255

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
              ++     ALL+Q    Q      ++F + + +   +   L K G +  A+HG  DQ 
Sbjct: 256 NKGSKAQALIALLKQYQWPQV-----LVFISARDDADAIAKRLVKAGINAAALHGEKDQT 310

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L++FK   IQ++VA+DL ARG+ +  +  V N D+P  A  Y+HRIGRT RAG  
Sbjct: 311 VRSQTLADFKANRIQVVVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAK 370

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLN-GDLSSLNPPLEKI--DIAQHNHARKNNPI 399
           G A +LV   ++  + AI  L  +++   +  D    + P E+   D A+HN A K  P 
Sbjct: 371 GLAISLVCHGEMPSLSAIRNLTARELPLASLADFPVTDKPSERAREDGAEHNVAPKRPPR 430

Query: 400 PQKSTGFDRRKKNYSSQKS 418
            +++   +RR  N  S K+
Sbjct: 431 DKQA---NRRSLNKHSVKA 446


>gi|282855131|ref|ZP_06264463.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
 gi|282581719|gb|EFB87104.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
          Length = 700

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 190/347 (54%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LG+  ++V A+   G   P  IQI  IP  +   DV G A TG+GKT +F +P+L+ 
Sbjct: 231 FSALGVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSR 290

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L         PR LIL PTRELA Q+AD       +  L+  L+ GG+ +  Q K  +RG
Sbjct: 291 LSATPREDNRPRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFKRG 350

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR++D    G   ++ + + V+DEAD M ++GF+  + +I   +P   Q LL
Sbjct: 351 VDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRLL 410

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + K+   ++  P   EV+    +  T+ H   A   +  +K  L+ ++    
Sbjct: 411 FSATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHH--AFQIKPHEKVGLMCEIANRS 468

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
               + I+F   ++    +   L + G    A+HG + Q +R ++L+ FK+G++ ++VA+
Sbjct: 469 ---GHTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVAT 525

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+ DV  V   D P   ++Y+HR GRT RAG  G   +LV
Sbjct: 526 DVAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLV 572


>gi|229593065|ref|YP_002875184.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens SBW25]
 gi|229364931|emb|CAY53031.1| ATP-independent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 461

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 132/369 (35%), Positives = 212/369 (57%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GYV+ T IQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 8   FNTLPLSAAMLANLDSLGYVEMTQIQAQSLPVILKGLDLIAQAKTGSGKTAAFGIGLLNP 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  +   N+ V  L GG+    Q   LE 
Sbjct: 68  INP---RYFGCQALVMCPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSLGPQIASLEH 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I++I S  P  RQTL
Sbjct: 125 GAHVIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIISKTPPRRQTL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++  F++ P++++     S  + IE  F     +  +  A+ + L   
Sbjct: 185 LFSATYPVSIKQLASKFMRAPQQVKAEAFHSD-DQIEQRFYEISPE-ERMEAVTKVLAHF 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + + FC  K+ V      L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 243 RPA--SCVAFCFTKQQVQETVDHLTAKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  +     AIE
Sbjct: 301 TDVAARGLDIDSLDMVINVELARDSEIHIHRVGRTGRAGETGIAISLVAPSEAHRAQAIE 360

Query: 362 KLIEKKVDW 370
           +L +  ++W
Sbjct: 361 QLQKSPLNW 369


>gi|154416622|ref|XP_001581333.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121915559|gb|EAY20347.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 541

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 132/353 (37%), Positives = 202/353 (57%), Gaps = 11/353 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF   G+  +V+  V   GY  PTP+Q  +IP +L   D+   +QTG+GKTA+F+LP++
Sbjct: 121 IDFPGCGIRNEVLRNVAHNGYKVPTPVQRYSIPYILNGEDLIVTSQTGSGKTAAFMLPVI 180

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T L  G      P  + L PTRELA Q+ +   K+ K  +L    + GG P   Q + L 
Sbjct: 181 TQL-IGTCHSPNPSCVALCPTRELAIQIFEETRKFCKGTDLKTTCVFGGAPITEQIRNLS 239

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS---LVPFT 177
           RG D++I TPGR++D   +  + ++ +  L++DEADRMLDMGF P +Q + +   + P  
Sbjct: 240 RGIDIVIATPGRLIDILKQHCITLSEVRFLILDEADRMLDMGFEPQMQEVINGWDMPPAD 299

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALL 235
            RQT+LFSAT  D ++ ++ +F++ PK   ++     A ++IE  F+  Y     K + L
Sbjct: 300 DRQTMLFSATFPDAVRNLARDFMR-PKYCRISVGMQDAPKSIEQRFI--YCSEMDKFSEL 356

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +++  D     ++F  +K +V  +   L  +  +V AIHG      R+  L  F  G 
Sbjct: 357 LGVIKEVDGPT--LVFAERKVSVDRIERFLYDEHTAVVAIHGERQMDQRLAALRQFTTGR 414

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             +MVA+D+A+RGLDI +V HV N D+P   + Y HRIGRTGRAG+HG A + 
Sbjct: 415 ANIMVATDVASRGLDISNVAHVINLDLPTDLDTYTHRIGRTGRAGKHGLATSF 467


>gi|255534707|ref|YP_003095078.1| ATP-dependent RNA helicase [Flavobacteriaceae bacterium 3519-10]
 gi|255340903|gb|ACU07016.1| ATP-dependent RNA helicase [Flavobacteriaceae bacterium 3519-10]
          Length = 450

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 132/369 (35%), Positives = 202/369 (54%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  L  K++  + D+   +PTPIQ KTI  +L   DV GIAQTGTGKT +++LP+L  
Sbjct: 6   FADFELPEKILDVLADSNLFEPTPIQEKTIKPILSGRDVMGIAQTGTGKTLAYLLPVLKT 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +  +     P  LIL PTREL  QV++  +   ++    V  + GG+  + Q      G
Sbjct: 66  WKYNKNG--NPTVLILVPTRELVVQVSEIVKNLTQHLTARVLGIYGGVNIKTQKLLFNDG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGRI+D      + +  ++ L++DE D ML++GF   +  I +++   RQ +L
Sbjct: 124 CDILVGTPGRIMDLAIDNAISLKEVQKLIVDEFDEMLNLGFKMQLTTIFTMMKEKRQNIL 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATMT+ +  V   +  +P  I +    +  E I          +  K  LL+ LL+S 
Sbjct: 184 FSATMTEAVDAVLYEYFADPVEISLAKSGTPLEKITQIGYKV-ENFHTKINLLEHLLKSD 242

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEK---QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +IFCN K+N   L   +++     F V  IH N  Q  R+  + +F+   ++ +
Sbjct: 243 TDFSKVLIFCNNKRNADYLFTKIDEIFPDQFDV--IHSNKSQNYRLNAMRSFENKEVRGL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARGLDI D+ HV NF++P   E YIHRIGRTGRA + G A + V K++   +  
Sbjct: 301 ITTDIMARGLDISDITHVINFEIPEVPEQYIHRIGRTGRADKDGIAVSFVTKKEETSLLD 360

Query: 360 IEKLIEKKV 368
           IE L++K V
Sbjct: 361 IEILMDKAV 369


>gi|328873234|gb|EGG21601.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           fasciculatum]
          Length = 418

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 121/372 (32%), Positives = 205/372 (55%), Gaps = 11/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+ KP+ IQ + I  +++  D    AQ+GTGKTA+F +  L  
Sbjct: 46  FESIHLREDLLRGIYGFGFEKPSAIQQRAIVPIIKGRDTIAQAQSGTGKTATFSIGALQS 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     ++ P+ +IL PTRELA Q+       G   ++ V   +G        ++LE+G
Sbjct: 106 VD---VSIKNPQVIILSPTRELAQQIQKVVMALGGFMSVQVHSFVGQKTISEDVRRLEQG 162

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +   TPGR++D  +R  L    I++L++DEAD ML +GF   I ++   +P   Q +L
Sbjct: 163 VHIASGTPGRVIDLISRKALNTRQIKMLILDEADEMLSLGFQQQINDVYRYLPPATQIVL 222

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+T ++  ++E F+ +P RI +     T E I+  FV+   +   +   C +   L 
Sbjct: 223 VSATLTQDVVSMTERFMTDPVRILLKRDELTLEGIKQFFVSVEKEEWKFGTLCDIYDSL- 281

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K  V  L + + +  F+V ++HG++DQ+ R +I+ +F+ G  +++
Sbjct: 282 ----TITQAVIFCNTKSKVDALTNKMREANFTVASLHGDMDQKEREEIIRSFRSGENRVL 337

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V   DI+ +  
Sbjct: 338 ITTDILARGIDVQQVSLVINYDLPMDRENYIHRIGRSGRFGRKGVAINFVKSSDIRILRD 397

Query: 360 IEKLIEKKVDWL 371
           IE+    ++D +
Sbjct: 398 IEQFYSTQIDEM 409


>gi|313763161|gb|EFS34525.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
 gi|313773199|gb|EFS39165.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
 gi|313793334|gb|EFS41392.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
 gi|313801023|gb|EFS42291.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
 gi|313808763|gb|EFS47217.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA2]
 gi|313810443|gb|EFS48157.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
 gi|313816500|gb|EFS54214.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
 gi|313817944|gb|EFS55658.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA2]
 gi|313819855|gb|EFS57569.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA1]
 gi|313823346|gb|EFS61060.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2]
 gi|313824820|gb|EFS62534.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA1]
 gi|313828335|gb|EFS66049.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
 gi|313830060|gb|EFS67774.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
 gi|313832667|gb|EFS70381.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
 gi|313838024|gb|EFS75738.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
 gi|314914409|gb|EFS78240.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
 gi|314917732|gb|EFS81563.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
 gi|314919541|gb|EFS83372.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
 gi|314925849|gb|EFS89680.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA3]
 gi|314930132|gb|EFS93963.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
 gi|314957125|gb|EFT01229.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
 gi|314957731|gb|EFT01834.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
 gi|314960793|gb|EFT04894.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2]
 gi|314963467|gb|EFT07567.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
 gi|314969950|gb|EFT14048.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
 gi|314973091|gb|EFT17187.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
 gi|314975587|gb|EFT19682.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
 gi|314979836|gb|EFT23930.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA2]
 gi|314984871|gb|EFT28963.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
 gi|314988743|gb|EFT32834.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3]
 gi|315077196|gb|EFT49261.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
 gi|315083323|gb|EFT55299.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA2]
 gi|315086904|gb|EFT58880.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3]
 gi|315089995|gb|EFT61971.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA1]
 gi|315096683|gb|EFT68659.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1]
 gi|315097910|gb|EFT69886.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
 gi|315100675|gb|EFT72651.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
 gi|315109155|gb|EFT81131.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
 gi|327325098|gb|EGE66904.1| ATP-dependent RNA helicase [Propionibacterium acnes HL096PA3]
 gi|327325275|gb|EGE67080.1| ATP-dependent RNA helicase [Propionibacterium acnes HL096PA2]
 gi|327444077|gb|EGE90731.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
 gi|327449297|gb|EGE95951.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2]
 gi|327449475|gb|EGE96129.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
 gi|327451498|gb|EGE98152.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
 gi|327451529|gb|EGE98183.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
 gi|327451811|gb|EGE98465.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
 gi|328752028|gb|EGF65644.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
 gi|328755440|gb|EGF69056.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
 gi|328756358|gb|EGF69974.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1]
 gi|328761308|gb|EGF74835.1| ATP-dependent RNA helicase [Propionibacterium acnes HL099PA1]
          Length = 491

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 190/347 (54%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LG+  ++V A+   G   P  IQI  IP  +   DV G A TG+GKT +F +P+L+ 
Sbjct: 22  FSALGVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSR 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L         PR LIL PTRELA Q+AD       +  L+  L+ GG+ +  Q K  +RG
Sbjct: 82  LSATPREDNRPRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFKRG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR++D    G   ++ + + V+DEAD M ++GF+  + +I   +P   Q LL
Sbjct: 142 VDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRLL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + K+   ++  P   EV+    +  T+ H   A   +  +K  L+ ++    
Sbjct: 202 FSATLDGAVNKLVRRYMHEPVIHEVDPDKGSVATMTHH--AFQIKPHEKVGLMCEIANRS 259

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
               + I+F   ++    +   L + G    A+HG + Q +R ++L+ FK+G++ ++VA+
Sbjct: 260 ---GHTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVAT 316

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+ DV  V   D P   ++Y+HR GRT RAG  G   +LV
Sbjct: 317 DVAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLV 363


>gi|212528760|ref|XP_002144537.1| ATP-dependent RNA helicase, putative [Penicillium marneffei ATCC
           18224]
 gi|210073935|gb|EEA28022.1| ATP-dependent RNA helicase, putative [Penicillium marneffei ATCC
           18224]
          Length = 503

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 129/348 (37%), Positives = 199/348 (57%), Gaps = 9/348 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML--TILEKGRARVRMPRTLIL 78
           +  PT +Q  T PL+    DV GIA+TG+GKT +F LP +   +  K + +   PR +IL
Sbjct: 107 FSAPTSVQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCVKNMVDSKKKLKPSHPRAVIL 166

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA Q+ +  E Y    ++ V  + GG+  + Q + L+  A +++ TPGR+ D  +
Sbjct: 167 TPTRELAMQIYEQLEGYAPRVSVRVTCIFGGVRKDEQREALKDTA-IVVATPGRLKDLES 225

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR-QTLLFSATMTDELQKVSEN 197
            G + ++ ++ LV+DEADRMLD GF   I++I + +P +R QT +F+AT    ++ ++ +
Sbjct: 226 EGAINLSKVKYLVLDEADRMLDKGFEQDIKDIVAPMPVSRRQTAMFTATWPVSVRNLANS 285

Query: 198 FLQNPKRIEVNTPSST---AETIEHCFVATYAQYSKKCALLQQL--LQSQDTMKNGIIFC 252
           F Q+P  + V    S    A T     V       K+  L Q L  L  + +    ++FC
Sbjct: 286 FTQDPVMVTVGGKPSEDPRANTRIKQVVEVLDGRDKENRLTQILAKLTRESSQGKILVFC 345

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             KK  + +   ++ +G++V  IHG++ Q  R K L++FK G + ++VA+D+AARGLDIP
Sbjct: 346 LYKKEAMRIERLIQSRGYAVAGIHGDLSQSDRFKSLASFKSGAVPILVATDVAARGLDIP 405

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            V  V N   P   E+Y+HRIGRTGRAG  G A TL  + D  H  A+
Sbjct: 406 AVKTVVNVTFPLTIEDYVHRIGRTGRAGADGHAITLFTENDKAHSGAL 453


>gi|238498592|ref|XP_002380531.1| DEAD/DEAH box RNA helicase [Aspergillus flavus NRRL3357]
 gi|220693805|gb|EED50150.1| DEAD/DEAH box RNA helicase [Aspergillus flavus NRRL3357]
          Length = 1201

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 131/373 (35%), Positives = 207/373 (55%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  + +  +   GY  PT IQ + IP ++   DV G+A+TG+GKT +F++PM   
Sbjct: 571 WSQCGLGVQTLDVIDRLGYSAPTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRH 630

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++  R    M  P  LI+ PTRELA Q+  + + + K  NL      GG P + Q   L+
Sbjct: 631 IKDQRPLENMEGPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLK 690

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I + V   
Sbjct: 691 RGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILANVRPD 750

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QT+LFSAT    ++ ++   L  P  I V   S  A  I    V   ++  K   LL+ 
Sbjct: 751 KQTVLFSATFPRNMEALARKTLNKPVEIVVGGRSVVAPEITQ-IVEVRSEDKKFIRLLEL 809

Query: 238 L--LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L  L S D  ++   +IF  +++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 810 LGNLYSTDENEDARALIFVERQEGADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKA 869

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 870 GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 929

Query: 354 IKHIDAIEKLIEK 366
            ++   I K +++
Sbjct: 930 ERYSVDIAKALKQ 942


>gi|58579756|ref|YP_198772.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58424350|gb|AAW73387.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 429

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 134/366 (36%), Positives = 193/366 (52%), Gaps = 10/366 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           D   L L P    A+  AG    TPIQ+  IP +L   D+   AQTG+GKT ++ LP+L 
Sbjct: 6   DLLSLQLPPLFESALARAGVRTLTPIQVAMIPPMLAARDLIVTAQTGSGKTLAYALPLLQ 65

Query: 62  ILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQN 116
             ++ +A  ++PR L   IL PTREL AQVA             L +    GG     Q 
Sbjct: 66  --QRLQAPEQVPRVLGGLILVPTRELVAQVAQTLLSLAAALPRRLKIVAATGGEAINPQL 123

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GAD++I TPGR+LD      L ++ +  LV+DEADR+LD+GF   I  I +L+P 
Sbjct: 124 MALRGGADIVIATPGRLLDLVTHNALRLSQVRTLVLDEADRLLDLGFGAEIDRILALLPA 183

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ++L SAT    +  +++  L++P RI ++     A  I    +A  A   ++  LL+
Sbjct: 184 QRQSVLVSATFPPAIASLAKRRLRDPLRITIDATPEHAPAIAQRAIAVDA--GQRTQLLR 241

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LLQ +      ++F   +     +   L K G     +HG + Q  R + L  FK+  +
Sbjct: 242 HLLQ-EHAWPQLLVFVASRHTADKVAEKLSKTGIEALPLHGELSQGRRERTLRAFKQADV 300

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+DLAARG+DI  +  V N+D+P    +Y HRIGRT RAG  GKA + V  E  + 
Sbjct: 301 QVLVATDLAARGIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGKAISFVTAERAQQ 360

Query: 357 IDAIEK 362
              IEK
Sbjct: 361 WRLIEK 366


>gi|302817632|ref|XP_002990491.1| hypothetical protein SELMODRAFT_131776 [Selaginella moellendorffii]
 gi|300141659|gb|EFJ08368.1| hypothetical protein SELMODRAFT_131776 [Selaginella moellendorffii]
          Length = 469

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 132/372 (35%), Positives = 211/372 (56%), Gaps = 10/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG++  +V A  + G   PTP+Q   +P +L+  DV G+AQTG+GKTA+F LP+L  
Sbjct: 55  FEELGVAEWLVGACKELGMRHPTPVQRACVPQILKGKDVLGMAQTGSGKTAAFALPILQR 114

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     L++ PTRELA Q++D F+  G   +L  A+++GG+    Q + L   
Sbjct: 115 LGENPYGIF---ALVMTPTRELAFQISDQFKALGAGVHLRCAVVVGGMDMTTQAQILMER 171

Query: 123 ADVLICTPGRILDHFNRG---KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             V+I TPGRI  H           +  + LV+DEAD +LD GF   +Q I   +   RQ
Sbjct: 172 PHVVIATPGRIKAHIGSDPDIAAAFSKTKFLVLDEADLLLDRGFQDELQTIFDGISKQRQ 231

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATMT +LQ + + F       +      T E+++  ++  +     K   L  LL
Sbjct: 232 TLLFSATMTGDLQALRDLFGHRAFFYQAYEGLKTVESLDQRYI--FMPGKVKNVYLTYLL 289

Query: 240 QSQDT--MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++ +   +++ IIF ++ +    L   L++ G S  A+H    Q  R+  L+ FK G   
Sbjct: 290 ENLELEDIRSVIIFVSRCRTCHLLSLILDELGISAVALHSVKTQPQRLAALNQFKSGQAT 349

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLDIP V  V N+D+P   ++Y+HR+GRT RAGR G+A +LV + D++ +
Sbjct: 350 ILIATDVASRGLDIPTVDLVVNYDIPRFTKDYVHRVGRTARAGRGGRAISLVTELDVELV 409

Query: 358 DAIEKLIEKKVD 369
             +E  + KK++
Sbjct: 410 HEVESFLGKKLE 421


>gi|307324569|ref|ZP_07603776.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306889813|gb|EFN20792.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 463

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 130/389 (33%), Positives = 201/389 (51%), Gaps = 11/389 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L +  +++  +   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 48  FAELDMPKELITELTQQGVTVPFPIQAATLPNALAGRDVLGRGRTGSGKTLAFGLALLAR 107

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV +    Y +   L  A ++GG+    Q   L  G
Sbjct: 108 TAGQRAEPRRPLALVLVPTRELAQQVTEALTPYARRLGLRAATVVGGMSINRQADALRNG 167

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ++V+I TPGR+ D   RG   ++ +   V+DEAD+M DMGF+P +  +   VP   Q LL
Sbjct: 168 SEVVIATPGRLYDLIERGDCRLDQVRTTVLDEADQMADMGFLPQVTRLLRQVPADGQRLL 227

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  ++ K++  FL +P    V+  +    T+EH  V   A   K+  +      ++
Sbjct: 228 FSATLDHDISKLTRQFLDDPAVHSVDPSAGAVTTMEH-HVLHIADTDKRSVV------TR 280

Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++G  ++F + K+ V  L   L   G    A+HG   Q  R + L  FK G +  +V
Sbjct: 281 VAARDGRVLLFLDTKRAVDRLTRHLLTSGVRAAALHGGKSQPQRTRTLDQFKSGHVTALV 340

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+++AARG+ + D+  V N D P   ++Y+HR GRT RAG  G   TLV  +  + +  +
Sbjct: 341 ATNVAARGIHVDDLDLVVNVDPPADHKDYLHRGGRTARAGGSGSVITLVTPDQRREMGRL 400

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
             + +  +      + S +P L +I  AQ
Sbjct: 401 --MADAGITPQTAQVHSADPELTRITGAQ 427


>gi|257437800|ref|ZP_05613555.1| ATP-dependent RNA helicase DeaD [Faecalibacterium prausnitzii
           A2-165]
 gi|257199723|gb|EEU98007.1| ATP-dependent RNA helicase DeaD [Faecalibacterium prausnitzii
           A2-165]
          Length = 395

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 123/364 (33%), Positives = 209/364 (57%), Gaps = 7/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M +++L  S  +  AV   G+ + T IQ KTIP++L   DV   A TGTGKT +F +P+ 
Sbjct: 1   MLYSELQCSEAIHKAVERMGFAEMTEIQEKTIPVMLAGRDVIAKAPTGTGKTCAFGIPVA 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             ++  +   + P+ +I+ PTRELA Q+A+   +       + VA + GG   E Q ++L
Sbjct: 61  EHIDPEK---KYPQAVIMAPTRELAQQIAEELTELTYFMPEVQVACVYGGANMEKQARRL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  +++ TPGR++DH+    + + ++  +V+DEAD ML+MGF   +++I  L+   + 
Sbjct: 118 AEGCQIVVATPGRLMDHYKHHSIDLAHVTQVVLDEADEMLNMGFYKDVRHIIELMKARKS 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +FSAT++ E+  +   +  N + I V     +   I    + T  +   K + L Q++
Sbjct: 178 LSMFSATISREVMDIGWLYQNNAEEITVQPREESQPKITQYMLETSGR--NKLSDLAQII 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   K  ++FC+ K N   L + L + GFSV  +HG++ Q+ R +I+ NF++G + ++
Sbjct: 236 IGEG-YKRVMVFCDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQNFRDGRLAIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  V N+DVP   E+Y HRIGRTGRA + G ++     E+ K +  
Sbjct: 295 VATDVAARGIDVSDVDAVINYDVPGDNEHYTHRIGRTGRAKKEGVSYLFYVPEEKKRVQE 354

Query: 360 IEKL 363
           + +L
Sbjct: 355 LLRL 358


>gi|255731175|ref|XP_002550512.1| eukaryotic initiation factor 4A-12 [Candida tropicalis MYA-3404]
 gi|240132469|gb|EER32027.1| eukaryotic initiation factor 4A-12 [Candida tropicalis MYA-3404]
          Length = 399

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 122/369 (33%), Positives = 202/369 (54%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P+++  +   G+  P+ IQ + I  ++   D    AQ+GTGKTA+F + ML +
Sbjct: 28  FESMKLKPELLKGIYAYGFEAPSAIQSRAIMQIISGKDTIAQAQSGTGKTATFSIGMLEV 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    + +  + LIL PTRELA Q+ +  +  G   N+     IGG       KKL++G
Sbjct: 88  ID---TKSKECQALILSPTRELATQIQNVVKHLGDYMNIHTHACIGGKNVGDDVKKLQQG 144

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+LD   R  L   NI++L++DEAD +   GF   I  I   +P   Q ++
Sbjct: 145 QQIVSGTPGRVLDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYEIYKHLPPAVQVVV 204

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT++ E+ +++  F  +P +I V     +   I+  +V    +   +   C L   L 
Sbjct: 205 VSATLSREVLEMTSKFTTDPVKILVKQDEISLSGIKQYYVQCEQEDWKFDTLCDLYDNL- 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K  V  L   + KQ F+V ++HG++ Q  R  I+++F+ G  +++
Sbjct: 264 ----TITQAVIFCNTKLKVNWLTDQMRKQNFTVVSMHGDMKQDERESIMNDFRTGNSRVL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A  L+ K+D+  +  
Sbjct: 320 ISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVSTLKE 379

Query: 360 IEKLIEKKV 368
           +E+    K+
Sbjct: 380 LERHYSTKI 388


>gi|314986130|gb|EFT30222.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA2]
          Length = 491

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 190/347 (54%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LG+  ++V A+   G   P  IQI  IP  +   DV G A TG+GKT +F +P+L+ 
Sbjct: 22  FSALGVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSR 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L         PR LIL PTRELA Q+AD       +  L+  L+ GG+ +  Q K  +RG
Sbjct: 82  LSATPREDNRPRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFKRG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR++D    G   ++ + + V+DEAD M ++GF+  + +I   +P   Q LL
Sbjct: 142 VDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRLL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + K+   ++  P   EV+    +  T+ H   A   +  +K  L+ ++    
Sbjct: 202 FSATLDGAVNKLVRRYMHEPVIHEVDPDKGSVATMTHH--AFQIKPHEKVGLMCEIANRS 259

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
               + I+F   ++    +   L + G    A+HG + Q +R ++L+ FK+G++ ++VA+
Sbjct: 260 ---GHTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVAT 316

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+ DV  V   D P   ++Y+HR GRT RAG  G   +LV
Sbjct: 317 DVAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLV 363


>gi|315049467|ref|XP_003174108.1| ATP-dependent RNA helicase fal1 [Arthroderma gypseum CBS 118893]
 gi|311342075|gb|EFR01278.1| ATP-dependent RNA helicase fal1 [Arthroderma gypseum CBS 118893]
          Length = 403

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 123/379 (32%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L +
Sbjct: 31  FDDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQV 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     +R  + L+L PTRELA Q+       G   N+     IGG       +KLE G
Sbjct: 91  ID---TVLRESQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEHG 147

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 148 QHVVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVV 207

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 208 VSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTL- 266

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++
Sbjct: 267 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVL 322

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 323 ISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRD 382

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 383 IELYYSTQIDEMPMNVADL 401


>gi|56201870|dbj|BAD73320.1| putative ethylene-responsive RNA helicase [Oryza sativa Japonica
           Group]
          Length = 521

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 129/374 (34%), Positives = 199/374 (53%), Gaps = 43/374 (11%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+G    V+  +  AG+V+PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP + 
Sbjct: 92  EFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIV 151

Query: 62  ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                 IL  G      P  L+L PTRELA Q+     K+G                   
Sbjct: 152 HVNAQPILAPGDG----PIVLVLAPTRELAVQIQQEATKFG------------------- 188

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
                   +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S + 
Sbjct: 189 -------VEIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIR 241

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQ-YSKKC 232
             RQTL +SAT   E+++++ NFL +P ++ + +    A     +H  + + +Q Y+K  
Sbjct: 242 PDRQTLYWSATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILSESQKYNKLV 301

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL+ ++     +    IF + KK    +   L   G+   +IHG+  Q  R  +LS FK
Sbjct: 302 NLLEDIMDGSRIL----IFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFK 357

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +M A+D+AARGLD+ DV +V N+D P   E+Y+HRIGRTGRAG  G A+T     
Sbjct: 358 SGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 417

Query: 353 DIKHIDAIEKLIEK 366
           + +    +  ++E+
Sbjct: 418 NARFAKDLINILEE 431


>gi|112419200|gb|AAI22412.1| Ddx10 protein [Danio rerio]
          Length = 439

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 139/372 (37%), Positives = 215/372 (57%), Gaps = 14/372 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  +L+A Y +PT IQ +TI   LQ  DV G A+TG+GKT +F++P+L  
Sbjct: 72  FSDFPLSKKTLKGLLEAQYRQPTEIQRQTIGFALQGRDVLGAAKTGSGKTLAFLIPVLEC 131

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L  E+  A   +   LI+ PTRELA Q  +   K GKN+  +  L+IGG   + +++K+ 
Sbjct: 132 LYREQWTAMDGLG-ALIISPTRELAYQTFEVLRKVGKNHEFSAGLVIGGKDLKDESEKIH 190

Query: 121 RGADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           R  +++ICTPGR+L H +       +++ +LV+DEADR+LDMGF   +  I   +P +RQ
Sbjct: 191 R-TNIIICTPGRLLQHMDETAAFHASDLHMLVLDEADRILDMGFADTLNAIVENLPKSRQ 249

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQ 237
           TLLFSAT T  ++ ++   L++P+ + V+  +  ST  T+E  +V    +  +K  +L  
Sbjct: 250 TLLFSATQTRSVKDLARLSLKDPEYVWVHEQAKFSTPATLEQNYVV--CELHQKVNMLYS 307

Query: 238 LLQSQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L+S    K  + F  C + + +  +   L + G SV A+HG   Q  R+++ ++F   T
Sbjct: 308 FLRSHLQKKIIVFFACCKEVQYLFRIFCRL-RPGISVLALHGKQQQMKRVEVYNDFVRKT 366

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++ A+D+AARGLD P V  V  FD P  A  YIHR+GRT R    G A  ++   + K
Sbjct: 367 SAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRVGRTARYKEGGGALLVLLPSEEK 426

Query: 356 HIDAIEKLIEKK 367
            +  I +L EKK
Sbjct: 427 GM--ISQLQEKK 436


>gi|156087226|ref|XP_001611020.1| eukaryotic initiation factor 4A-3 (eIF4A-3)  [Babesia bovis T2Bo]
 gi|154798273|gb|EDO07452.1| eukaryotic initiation factor 4A-3 (eIF4A-3) , putative [Babesia
           bovis]
          Length = 395

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 203/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  +++  +   G+ KP+ +Q + I  +L   DV   +Q+GTGKT  F L  L I
Sbjct: 24  FEGLGLREEILKGIFSYGFDKPSAVQQRAIKPILDGRDVIIQSQSGTGKTCVFCLGALQI 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +       +  + L+L PTRELA Q        G   N+ V   IGG       K LE G
Sbjct: 84  VNPAS---KQTQVLLLSPTRELAEQSQKVCLALGDYCNVEVHCCIGGKRVSDDIKALESG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+        L   NI+ +++DEAD ML+ GF   + +I   +P T Q +L
Sbjct: 141 VHIVSGTPGRVNHMIAERHLNTRNIKQMILDEADEMLNRGFKDQVYSIYRYLPPTLQVIL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++E F+ NP R+ V     T + I+  FVA   +   +   C L + L+
Sbjct: 201 VSATLPQEVVEITEKFMNNPFRVLVKRDELTLDGIKQFFVAVEKEQWKFDTLCDLYESLI 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      ++FCN ++ V  L   ++   F+VC +HG + Q+ R  I+  F+ G  +++
Sbjct: 261 ITQ-----AVVFCNTREKVDWLAKRMQDSNFTVCKMHGEMSQKERNDIMQRFRRGESRVL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+  RGLD+  V  V N+D+PN  ENYIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 316 ISTDIWGRGLDVQQVSLVVNYDLPNSRENYIHRIGRSGRYGRKGVAINFVKDDDIRILRD 375

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 376 IEQYYSTQIDEMPMNIAEL 394


>gi|126664017|ref|ZP_01735011.1| possible ATP-dependent RNA helicase [Flavobacteria bacterium BAL38]
 gi|126623966|gb|EAZ94660.1| possible ATP-dependent RNA helicase [Flavobacteria bacterium BAL38]
          Length = 448

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 129/362 (35%), Positives = 207/362 (57%), Gaps = 7/362 (1%)

Query: 10  PKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
           PK +   LD  G+V  TPIQ K+  ++L   D+ GIAQTGTGKT +++LP+L   +    
Sbjct: 10  PKSLQKALDELGFVHATPIQEKSHSVILSGRDMMGIAQTGTGKTFAYLLPILK--QWKFQ 67

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
                R +IL PTREL  QVA+  EK  K  ++    + GG+    Q K L +G D+L+ 
Sbjct: 68  NNESARIVILVPTRELVVQVAEEVEKLTKYMSVRTLGIYGGVNINTQRKALAQGVDILVG 127

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR++D    G L  + ++ LVIDE D +L++GF   + +I S++   +Q +LFSATMT
Sbjct: 128 TPGRVMDLGLDGVLRFDELQKLVIDEFDEILNLGFRTQLTSILSMMRGKKQNILFSATMT 187

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
           +E+  + + + + P+ + +    +  E IE   V     +  K  +L+ L++  +TM+  
Sbjct: 188 EEVDAMLDEYFEFPEEVSLAQSGTPLEQIEQI-VYKVPNFLTKLNMLKHLVRETETMERV 246

Query: 249 IIFCNQKKNVVNLCHSLEKQGF--SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           +IF N K+ +V+L      + F      IH N  Q  R+  +++F+ G ++ +V +D+ A
Sbjct: 247 LIFVNNKR-IVDLVFETLDEEFPGQFGVIHSNKSQNYRLNTMASFQAGELRGLVTTDIMA 305

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI D+ HV N       E Y+HRIGRTGRA + G A +LV+  +++    +E L++ 
Sbjct: 306 RGLDISDITHVINLQFTEEPEKYMHRIGRTGRADKTGIAISLVSPSEVESKIEVELLMDT 365

Query: 367 KV 368
           K+
Sbjct: 366 KI 367


>gi|302654809|ref|XP_003019203.1| hypothetical protein TRV_06752 [Trichophyton verrucosum HKI 0517]
 gi|291182911|gb|EFE38558.1| hypothetical protein TRV_06752 [Trichophyton verrucosum HKI 0517]
          Length = 403

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 123/379 (32%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L +
Sbjct: 31  FDDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQV 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     +R  + L+L PTRELA Q+       G   N+     IGG       +KLE G
Sbjct: 91  ID---TVLRESQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEHG 147

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 148 QHVVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVV 207

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 208 VSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTL- 266

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++
Sbjct: 267 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVL 322

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 323 ISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRD 382

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 383 IELYYSTQIDEMPMNVADL 401


>gi|289628314|ref|ZP_06461268.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
          Length = 413

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 127/335 (37%), Positives = 193/335 (57%), Gaps = 5/335 (1%)

Query: 34  LVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMP-RTLILEPTRELAAQVADNF 92
           L LQ  D+   AQTG+GKTA+FVLP+L  L  G A+VR+  R +IL PTRELA Q     
Sbjct: 1   LALQGRDLRVTAQTGSGKTAAFVLPILNRL-IGPAKVRVDIRAVILLPTRELAQQTLKEV 59

Query: 93  EKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVI 152
           E++ +   +   L+ GG  F+ Q   L +  D+LI TPGR+L+  N G L + ++E+LV+
Sbjct: 60  ERFSQFTFVKAGLITGGEDFKVQAAMLRKVPDILIGTPGRLLEQLNAGNLDLKHVEVLVL 119

Query: 153 DEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE-LQKVSENFLQNPKRIEVNTPS 211
           DEADRMLDMGF   ++ +        QT+LFSAT     L+++    L++P+ ++VN+ S
Sbjct: 120 DEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGLREMIGKVLKDPQHLQVNSVS 179

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
             A    H  +       K+  L    L + +T +  IIF N K     L   L    + 
Sbjct: 180 ELASGTRHQIITADHNVHKEQVL--NWLLANETYQKAIIFTNTKAMADRLYGRLVALEYK 237

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
              +HG+ DQ+ R   +   K+G  ++MVA+D+AARGLD+  +  V NFD+P   ++Y+H
Sbjct: 238 AFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYVH 297

Query: 332 RIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           R+GRTGRAG  G A +L+   D   + ++E+ +++
Sbjct: 298 RVGRTGRAGSDGLAISLICHGDWNLMSSVERYLKQ 332


>gi|266619670|ref|ZP_06112605.1| ATP-dependent RNA helicase DbpA [Clostridium hathewayi DSM 13479]
 gi|288868767|gb|EFD01066.1| ATP-dependent RNA helicase DbpA [Clostridium hathewayi DSM 13479]
          Length = 483

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 125/367 (34%), Positives = 214/367 (58%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L+P+++ A+   GY +PT IQ + IP VL+  +V   ++TGTGKTA+F +P+   
Sbjct: 10  FLPYALAPEIIHALDLLGYQEPTEIQREVIPAVLEGRNVAARSRTGTGKTAAFGIPLC-- 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            EK      +P+ L+LEP+RELA QV++     G+   L V  + GG P + Q + +++ 
Sbjct: 68  -EKIVWEENLPQALVLEPSRELAVQVSNELFHIGRRKRLKVPAVFGGFPIDKQMRTIKQK 126

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGR++D   R  L +  I  LVIDEAD MLDMGF+  ++ I +L+P   + LL
Sbjct: 127 SHIVVGTPGRVMDLIQRECLKLAGIRYLVIDEADLMLDMGFLEEVKQIMALLPKGGRVLL 186

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQS 241
           FSAT+ ++++ + + ++ +   I    P   AE         Y A   +K  LL++ L  
Sbjct: 187 FSATLDEKVRLLVDEYMADAVMI---APEPDAEEEPAISQVVYRADPEEKYDLLKRTLIL 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++  ++ +IFC  ++ V  L   L++       IHG ++QR R+K +  F+ G  + ++A
Sbjct: 244 ENP-ESCMIFCGTREMVNVLLQKLKRDRIFCGMIHGEMEQRERLKTVDAFRRGGFRFLIA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D   +  V N+D P   E Y+HRIGRTGR G +G+A +L+ + + + +  +E
Sbjct: 303 TDVAARGIDFDKIDLVVNYDFPGGRETYVHRIGRTGRNGENGRAVSLLCESEERMLHMVE 362

Query: 362 KLIEKKV 368
             + +++
Sbjct: 363 AYMGREL 369


>gi|125559478|gb|EAZ05014.1| hypothetical protein OsI_27195 [Oryza sativa Indica Group]
          Length = 414

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 129/333 (38%), Positives = 194/333 (58%), Gaps = 9/333 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTL--I 77
           G+  PT IQ + IP  LQ  DV G+ QTG+GKTA+F LP++  L +   R   PR L  +
Sbjct: 2   GWKAPTRIQAEAIPFALQGRDVIGVGQTGSGKTAAFALPIIQALLEHEHR---PRFLACV 58

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           L PTRELA Q+A  FE  G   +L  ++LIGGIP  +Q   L +   V++ TPGR+LDH 
Sbjct: 59  LAPTRELAIQIAKQFEALGSAISLQCSVLIGGIPRTSQTISLAKRPHVVVGTPGRLLDHL 118

Query: 138 NRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
              K    N ++ LV+DEAD +L + F   + +I +++P  R+T LFSATMT++++K+  
Sbjct: 119 TNTKGFSFNKLKYLVLDEADDLLKVDFQKAVDDILNVIPKERRTFLFSATMTEKVKKLRR 178

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
             L+NP ++EV +  S  +T+        A+Y K C L+  L +   +M   ++F    +
Sbjct: 179 ACLKNPVKVEVASKYSLVDTLRQDLYVVPAKY-KDCYLIHVLNKMPGSMI--MVFVRTCE 235

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
           +   L   L    F   +I G + Q  R+  L+ F+     ++V +D+A+RGLDI  V  
Sbjct: 236 STRLLALMLRNLRFKAISISGQMSQDKRLGALNRFRTRDCNILVCTDVASRGLDIQGVDV 295

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           V N+D P  +++YIHR+GRT RAG+ G A +LV
Sbjct: 296 VINYDFPLNSKDYIHRVGRTARAGQSGYAVSLV 328


>gi|84997373|ref|XP_953408.1| DEAD-box family helicase [Theileria annulata strain Ankara]
 gi|65304404|emb|CAI76783.1| DEAD-box family helicase, putative [Theileria annulata]
          Length = 570

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 139/393 (35%), Positives = 206/393 (52%), Gaps = 24/393 (6%)

Query: 1   MDFADLGLSPKVV---CAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           ++++D GL   ++    A+ + GY  PT IQ K IPL L+  D+  +   G+GKTASF++
Sbjct: 75  LNWSDFGLCRSIMRVGIAISEMGYQNPTIIQSKVIPLALEGKDLLIMMIQGSGKTASFLI 134

Query: 58  PMLTIL-----------EKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105
           P L  L           EK     R   + L++ PTRELAAQ    F+   K  +    L
Sbjct: 135 PTLQRLVVSGVLKQLTKEKQAYNTRFGTKALVILPTRELAAQCFQVFKSLSKYLSSKAIL 194

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFI 164
           L GGIP + Q  +L +  + +ICTPGR LD   N   + + NIE++++DEAD++L++GF 
Sbjct: 195 LTGGIPIKEQENRLRQFPETIICTPGRALDMLINSSSINVENIEVVIMDEADKLLELGFR 254

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVA 223
                +       RQT+LFSAT+T+E +++    L NP  ++V+ P+  + T+E    + 
Sbjct: 255 DECLQVLKYCNRNRQTMLFSATLTEETKELVSLSLVNPVYVKVDDPTKVSRTLEFEMMMI 314

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
              +Y + CAL      S+D     I+F   K++   +             +HGN+ Q  
Sbjct: 315 PKEEYREACALYLCTKYSKD---KTILFFQTKRSAHRMFLIFNLLNMKCGELHGNLSQSK 371

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + +  FK G I  ++AS+LA+RGLDIP V  V N D+P     YIHR+GRT R G HG
Sbjct: 372 RFESVERFKNGEIDYLLASELASRGLDIPGVKTVINVDLPTDITRYIHRVGRTARMGSHG 431

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
           KA TL   E    +    KL  KK   +   LS
Sbjct: 432 KAITLYVDEQRSQV----KLFLKKTSDIGATLS 460


>gi|294501273|ref|YP_003564973.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           megaterium QM B1551]
 gi|295706620|ref|YP_003599695.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294351210|gb|ADE71539.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           megaterium QM B1551]
 gi|294804279|gb|ADF41345.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           megaterium DSM 319]
          Length = 439

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 132/378 (34%), Positives = 211/378 (55%), Gaps = 13/378 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F      P ++ A+   G+ +PT IQ + IP VL+   V G +QTGTGKT +++LP+L 
Sbjct: 5   NFERFEFQPFLIEAIKQLGFYQPTEIQERLIPSVLKGESVIGQSQTGTGKTHAYLLPLLE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY----NLTVALLIGGIPFEAQNK 117
            ++  +  V++   +I  PTRELA+Q+     K  K+      ++    IGG   +    
Sbjct: 65  KVDPKKEEVQV---VITAPTRELASQIYQEVLKLTKHSAEGEEISAKCFIGGTDKQRTID 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL++   V++ TP R+ D  N   L++   + LV+DEAD MLDMGF+  +  + S +P  
Sbjct: 122 KLKKQPQVVVGTPARLFDLVNEKALVVYTTKALVVDEADLMLDMGFLEDVDRLASNMPEK 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+ ++L+   + +++NPK   V+   + A  +EH  V    ++  K  LL  
Sbjct: 182 LQMLVFSATIPEKLKPFLKKYMENPKFTHVSPKQAAAAKLEHVLVPL--RHRNKFKLLHD 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L S +     I+F N KK    +   L  +G  V  IHG++  R R K++        Q
Sbjct: 240 MLISYNPYL-AIVFTNTKKMADEVADDLLSKGLKVGRIHGDLSPRDRKKMMKQINNLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV NF++P+  + YIHR+GRT RAG  G A T+    D++  
Sbjct: 299 YVVATDLAARGIDIEGISHVINFELPSDLDFYIHRVGRTARAGHSGIAATIF---DVEDE 355

Query: 358 DAIEKLIEKKVDWLNGDL 375
           DA+ KL +  ++++N DL
Sbjct: 356 DAVNKLEKMGIEFVNKDL 373


>gi|302408591|ref|XP_003002130.1| ATP-dependent RNA helicase FAL1 [Verticillium albo-atrum VaMs.102]
 gi|261359051|gb|EEY21479.1| ATP-dependent RNA helicase FAL1 [Verticillium albo-atrum VaMs.102]
          Length = 401

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   GY  P+ +Q + I  V +  D    AQ+GTGKTA+F + ML +
Sbjct: 29  FESMSLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQV 88

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 89  IDTA---VRESQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYG 145

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 146 QHIVSGTPGRVADMIRRRDLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVV 205

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 206 VSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTL- 264

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG++ Q+ R  I+ +F++G  +++
Sbjct: 265 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVL 320

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 321 ISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRD 380

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 381 IELYYSTQIDEMPMNVADL 399


>gi|227206264|dbj|BAH57187.1| AT4G16630 [Arabidopsis thaliana]
          Length = 617

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 135/372 (36%), Positives = 200/372 (53%), Gaps = 15/372 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  ++ A    GY KPTPIQ   IPL L   D+C  A TG+GKTA+F LP L  
Sbjct: 107 FMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLER 166

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     RV   R LIL PTRELA Q+    +   +  ++   L++GG+    Q   L   
Sbjct: 167 LLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSM 226

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D+++ TPGR++DH  N   + ++++ +L++DEADR+L  GF   I  +  L P  RQT+
Sbjct: 227 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTM 286

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVN-----TPSSTAETIEHCFVATYAQYSKKCALLQ 236
           LFSATMT+E++++ +  L  P R+  +      P  T E +    +    + +++  LL 
Sbjct: 287 LFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVR---IRRTREANQEAVLLS 343

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L ++      IIF   K+    L       G     +HGN+ Q  R+  L  F++  +
Sbjct: 344 --LCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEV 401

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             ++A+D+AARGLDI  V  V N+  P   ++Y+HR+GRT RAGR G A T V   D   
Sbjct: 402 DFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSD--- 458

Query: 357 IDAIEKLIEKKV 368
             ++ K+I KKV
Sbjct: 459 -RSLLKVIAKKV 469


>gi|189461309|ref|ZP_03010094.1| hypothetical protein BACCOP_01959 [Bacteroides coprocola DSM 17136]
 gi|189431838|gb|EDV00823.1| hypothetical protein BACCOP_01959 [Bacteroides coprocola DSM 17136]
          Length = 323

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 120/327 (36%), Positives = 193/327 (59%), Gaps = 7/327 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L   V+ A+    + + TP+Q  TIP++L+  D+ G+AQTGTGKTA+++LP++
Sbjct: 1   MKFSELNLEDSVLQALDAMNFRECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117
             L KG         +I+ PTRELA Q+    E +     ++   + GG   I FE + K
Sbjct: 61  NELSKGGYPADAINCIIMSPTRELAQQIDQQMEGFSYFMPVSSVAIYGGNDGIRFEQEKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFADDIMQIVKYLPKK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q++++  LQNP  +++       + I+  ++   AQ   K  +++ 
Sbjct: 181 RQTIMFSATMPAKIQQLAKTILQNPVEVKLAVSKPAEKIIQAAYICYEAQ---KLGIIES 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L  SQ   +  IIF + K  V  +  SL++   +V  +H +++Q  R  I+  F+ G I 
Sbjct: 238 LF-SQQKPERVIIFASSKLKVKEVAKSLKRMNLNVGEMHSDLEQNQRDAIMHEFRNGRIS 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPN 324
           ++VA+D+ ARG+DI D+  V N+DVPN
Sbjct: 297 MLVATDIVARGIDIDDIRLVINYDVPN 323


>gi|290989740|ref|XP_002677495.1| dead box ATP-dependent RNA helicase [Naegleria gruberi]
 gi|284091103|gb|EFC44751.1| dead box ATP-dependent RNA helicase [Naegleria gruberi]
          Length = 618

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 202/361 (55%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF + GL  +++  + + G+ +P+PIQ +T+PL L   D+   A+ GTGKTA+F++P L 
Sbjct: 245 DFEEFGLKRELLMGIFEKGFERPSPIQEQTVPLALFGRDILARAKNGTGKTAAFIIPCLE 304

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  + ++++   LIL PTRELA Q +   ++ GK  N+ V +  GG   +    +L +
Sbjct: 305 RVDTSKNQIQI---LILVPTRELALQTSHVCKEIGKYLNVEVMVTTGGTSLKDDIVRLYK 361

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRI+D  ++G   +NN+ +LV+DEAD++L   F+P I+ + S VP +RQ L
Sbjct: 362 PVHILVGTPGRIIDLASKGVANLNNVSMLVMDEADKLLSPEFVPLIEKLISFVPPSRQIL 421

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++   + +L  P  I +    +     ++     + +  +K   L  L  S
Sbjct: 422 LFSATFPITVKDFRDKWLTKPYEINLMDELTLKGVTQY---YAFVEERQKVHCLNTLF-S 477

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 478 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMPQDLRNRVFHDFRNGACRNLVS 537

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A   V  ED  ++  IE
Sbjct: 538 SDLFTRGIDIQAVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINFVTYEDRFNLYKIE 597

Query: 362 K 362
           +
Sbjct: 598 Q 598


>gi|71995514|ref|NP_001021793.1| Vasa- and Belle-like Helicase family member (vbh-1) [Caenorhabditis
           elegans]
 gi|51988117|gb|AAU20831.1| Vasa- and belle-like helicase protein 1, isoform c, partially
           confirmed by transcript evidence [Caenorhabditis
           elegans]
          Length = 660

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 139/363 (38%), Positives = 207/363 (57%), Gaps = 19/363 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G  P V+  V  +GY KPTP+Q  +IP +L   D+   AQTG+GKTA+F+LP++  
Sbjct: 141 FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQH 200

Query: 62  ILEKGRARVRMP------RT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           IL  G   V+ P      RT     L+L PTRELA Q+     K+    N+  A+L GG 
Sbjct: 201 ILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGR 260

Query: 111 P-FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
             +  Q  +L  G  +LI TPGR++D   +G + +     LV+DEADRMLDMGF P I+ 
Sbjct: 261 ENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRK 320

Query: 170 ITS--LVPFT-RQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATY 225
           I    + P T R T +FSAT   E+Q ++++FL+ N   + V    ST+E IE   +  +
Sbjct: 321 IVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLL--W 378

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
               +K + L ++L ++ +    ++F   K+    L + L +Q     +IHG++ Q  R 
Sbjct: 379 VNEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERE 438

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P  ++ Y+HRIGRTGR G  G A
Sbjct: 439 RNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIA 498

Query: 346 FTL 348
            + 
Sbjct: 499 TSF 501


>gi|296817029|ref|XP_002848851.1| eukaryotic initiation factor 4A-12 [Arthroderma otae CBS 113480]
 gi|302506162|ref|XP_003015038.1| hypothetical protein ARB_06798 [Arthroderma benhamiae CBS 112371]
 gi|238839304|gb|EEQ28966.1| eukaryotic initiation factor 4A-12 [Arthroderma otae CBS 113480]
 gi|291178609|gb|EFE34398.1| hypothetical protein ARB_06798 [Arthroderma benhamiae CBS 112371]
 gi|326469057|gb|EGD93066.1| eukaryotic initiation factor 4A-12 [Trichophyton tonsurans CBS
           112818]
 gi|326480615|gb|EGE04625.1| eukaryotic initiation factor 4A-12 [Trichophyton equinum CBS
           127.97]
          Length = 399

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 123/379 (32%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L +
Sbjct: 27  FDDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQV 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     +R  + L+L PTRELA Q+       G   N+     IGG       +KLE G
Sbjct: 87  ID---TVLRESQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEHG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 144 QHVVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVV 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 204 VSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTL- 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++
Sbjct: 263 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 319 ISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRD 378

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 379 IELYYSTQIDEMPMNVADL 397


>gi|221487611|gb|EEE25843.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
          Length = 685

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 132/366 (36%), Positives = 200/366 (54%), Gaps = 21/366 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
             F + G    +   +    + +PT IQ    P  L   D+ GIAQTG+GKT  F+LP L
Sbjct: 277 FSFEETGFPTAIQNQLRKMNFAEPTAIQKIGWPTALSGRDMIGIAQTGSGKTLGFLLPGL 336

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-------------VAL 105
                +   A+ + P  L+L PTRELA Q+     ++ +  +LT              A 
Sbjct: 337 VHAAAQPPLAQGQGPIVLVLAPTRELAMQIRHECMRFTEGLSLTSSEDPQRADTKFRTAC 396

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG+P + Q  +L  GA++LI TPGR++D  + G   +  +  +V+DEADRM+DMGF P
Sbjct: 397 VYGGVPRQGQATELRNGAEILIATPGRLIDFLDLGVTNLKRVSYIVLDEADRMMDMGFEP 456

Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK-RIEVNTP--SSTAETIEHCFV 222
            ++ I S V   RQTLL+SAT   E++ ++  F +    +++V      + A   +   V
Sbjct: 457 QVRKIFSQVRPDRQTLLWSATWPKEVRGLASEFCRTRVVKLQVGKADLQANANVTQRIEV 516

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
            +  Q   +   L  +LQ + T +  +IFC  K+    LC  L  +     AIHG+ +QR
Sbjct: 517 VSSNQLQHR---LLSVLQEEVTGQKTLIFCETKRQCDQLCRELRYRQLRALAIHGDKEQR 573

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R +IL +F++G  ++++A+D+A+RGLDI DV  V N+DVP   E+YIHRIGRTGRAG  
Sbjct: 574 ERDRILHDFRKGDCEILLATDVASRGLDIQDVKFVINYDVPKNIESYIHRIGRTGRAGNK 633

Query: 343 GKAFTL 348
           G A + 
Sbjct: 634 GTAISF 639


>gi|207367146|dbj|BAG72093.1| vasa [Trachurus japonicus]
          Length = 657

 Score =  226 bits (576), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 128/359 (35%), Positives = 204/359 (56%), Gaps = 14/359 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 219 MTFEEAALCESLRKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 278

Query: 61  T-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G A      ++ P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 279 QKLMADGVAASQFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVASGH 338

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + + RG ++L  TPGR+LD   RGK+ +  +  LV+DEADRMLDMGF P ++ +    
Sbjct: 339 QIRDICRGCNILCGTPGRLLDVIGRGKVGLEKLRYLVLDEADRMLDMGFEPDMRRLVGSP 398

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYS 229
                  R TL+FSAT  +++Q+++ +FL+     + V         +E  F+    ++S
Sbjct: 399 GMPTKENRNTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIEV-TKFS 457

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  L+  LL++  + +  ++F   K+    +   L +      +IHG+ +QR R + L+
Sbjct: 458 KREQLVD-LLKATGSERT-MVFVETKRQADFIATFLSQTKIPTTSIHGDREQREREQALA 515

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +F+ G   ++VA+ +AARGLDIPDV HV NFD+PN  + Y+HRIGRTGR G  G+A + 
Sbjct: 516 DFRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSF 574


>gi|254568340|ref|XP_002491280.1| Putative ATP-dependent RNA helicase of the DEAD-box family [Pichia
           pastoris GS115]
 gi|238031077|emb|CAY69000.1| Putative ATP-dependent RNA helicase of the DEAD-box family [Pichia
           pastoris GS115]
 gi|328352202|emb|CCA38601.1| ATP-dependent RNA helicase [Pichia pastoris CBS 7435]
          Length = 434

 Score =  226 bits (576), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 146/429 (34%), Positives = 241/429 (56%), Gaps = 29/429 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYV-KPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           + F +LG+S K +C  LDA  +  P+ IQ  TIP +L  +D  G A+TG+GKT +F  PM
Sbjct: 2   VKFEELGVS-KWLCESLDAMKIYTPSKIQEATIPKILAGYDCIGGAKTGSGKTIAFAAPM 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           LT   +    V     LIL PTRELA Q+A+ +   G + N+ V++++GG     Q  +L
Sbjct: 61  LTKWSEDPYGVF---GLILTPTRELALQIAEQYAALGASMNIKVSVILGGGDIVQQALEL 117

Query: 120 ERGADVLICTPGRILDH-FNRGKLL---MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           +R    ++ TPGR+ DH  + G+     +  I+ LV+DEADR+L   F   ++    ++P
Sbjct: 118 QRRPHFVVATPGRLADHILSSGEETIGGLRKIKFLVLDEADRLLSNSFGSDLERCFKVLP 177

Query: 176 --FTRQTLLFSATMTDELQKVSEN---------FLQNPKRIE-VNTPSSTAETIEHCFVA 223
               RQTLLF+AT+TDE++ + E          F+   + ++ V  P++   T  + F+ 
Sbjct: 178 PPEKRQTLLFTATVTDEVRALKEKPVPEGKLPVFVHEVESVDKVAIPATL--TTNYLFIP 235

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
           +Y + +   A+L     +  T+   I+F N+ +    L  +L    F V ++H  + Q  
Sbjct: 236 SYVKEAYLNAVLALEENADSTV---IVFVNRTQTAELLRRTLRNLEFRVASLHSEMPQIE 292

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R+  L  FK G  ++++A+D+A+RGLDIP V  V N+D+P   ++YIHR+GRT RAGR G
Sbjct: 293 RINSLHRFKAGAARILIATDVASRGLDIPSVELVVNYDMPADPDDYIHRVGRTARAGRKG 352

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           ++ + V ++D+K + AIE+ I KK+D    +L + N  +E   + +   A++   +  + 
Sbjct: 353 ESLSFVTEQDVKRVLAIEERINKKMD--KYELVTDNKVIE-TSLHKTGAAKREALMAMER 409

Query: 404 TGFDRRKKN 412
            GF  ++KN
Sbjct: 410 EGFGEKRKN 418


>gi|39940710|ref|XP_359892.1| eukaryotic initiation factor 4A-12 [Magnaporthe oryzae 70-15]
 gi|152032454|sp|A4QU31|FAL1_MAGO7 RecName: Full=ATP-dependent RNA helicase FAL1
 gi|145010887|gb|EDJ95543.1| eukaryotic initiation factor 4A-12 [Magnaporthe oryzae 70-15]
          Length = 401

 Score =  226 bits (576), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   GY  P+ +Q + I  V +  D    AQ+GTGKTA+F + ML +
Sbjct: 29  FESMALKESLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQV 88

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 89  IDTA---VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYG 145

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 146 QHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVVV 205

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 206 VSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAIEKEDWKFDTLCDLYDTL- 264

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG++ Q+ R  I+ +F++G  +++
Sbjct: 265 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVL 320

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 321 ISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRD 380

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 381 IELYYSTQIDEMPMNVADL 399


>gi|30683736|ref|NP_193396.3| DEAD/DEAH box helicase, putative (RH28) [Arabidopsis thaliana]
 gi|75338927|sp|Q9ZRZ8|RH28_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 28
 gi|3776027|emb|CAA09214.1| RNA helicase [Arabidopsis thaliana]
 gi|110736657|dbj|BAF00292.1| RNA helicase like protein [Arabidopsis thaliana]
 gi|332658378|gb|AEE83778.1| DEAD-box ATP-dependent RNA helicase 28 [Arabidopsis thaliana]
          Length = 789

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 133/372 (35%), Positives = 196/372 (52%), Gaps = 11/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  ++ A    GY KPTPIQ   IPL L   D+C  A TG+GKTA+F LP L  
Sbjct: 169 FMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLER 228

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     RV   R LIL PTRELA Q+    +   +  ++   L++GG+    Q   L   
Sbjct: 229 LLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSM 288

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D+++ TPGR++DH  N   + ++++ +L++DEADR+L  GF   I  +  L P  RQT+
Sbjct: 289 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTM 348

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVN-----TPSSTAETIEHCFVATYAQYSKKCALLQ 236
           LFSATMT+E++++ +  L  P R+  +      P  T E +         Q +   +L  
Sbjct: 349 LFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLCT 408

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +  +S+      IIF   K+    L       G     +HGN+ Q  R+  L  F++  +
Sbjct: 409 RTFKSK-----VIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEV 463

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             ++A+D+AARGLDI  V  V N+  P   ++Y+HR+GRT RAGR G A T V   D   
Sbjct: 464 DFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSL 523

Query: 357 IDAIEKLIEKKV 368
           +  I K +  K+
Sbjct: 524 LKVIAKKVGSKL 535


>gi|302665308|ref|XP_003024266.1| hypothetical protein TRV_01617 [Trichophyton verrucosum HKI 0517]
 gi|291188313|gb|EFE43655.1| hypothetical protein TRV_01617 [Trichophyton verrucosum HKI 0517]
          Length = 1171

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 131/373 (35%), Positives = 205/373 (54%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  + +  +   GY  PT IQ + +P ++   DV G+A+TG+GKT +F+LPM   
Sbjct: 540 WSQCGLGVQTLDVIRKLGYEGPTSIQSQAVPAIMSGRDVIGVAKTGSGKTIAFLLPMFRH 599

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R    M  P +LI+ PTRELA Q+      + K  NL      GG P + Q  +L+
Sbjct: 600 IRDQRPLENMEGPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELK 659

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   +   
Sbjct: 660 RGAEIIVCTPGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRPN 719

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT    ++ ++   L  P  I V   S  A  I    V      +K   LL+ 
Sbjct: 720 RQTVLFSATFPRNMEALARKTLSKPIEIIVGGRSVVAPEITQ-IVEVRNDDAKFVRLLEL 778

Query: 238 L--LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L  L S D  ++   ++F ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 779 LGNLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKA 838

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 839 GIFPILVATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 898

Query: 354 IKHIDAIEKLIEK 366
            ++   I K +++
Sbjct: 899 ERYSVDISKALKQ 911


>gi|58268018|ref|XP_571165.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|74685312|sp|Q5KHB7|DBP3_CRYNE RecName: Full=ATP-dependent RNA helicase DBP3
 gi|57227399|gb|AAW43858.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 605

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 133/355 (37%), Positives = 203/355 (57%), Gaps = 22/355 (6%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL---------EKGRARVR 71
           + KPTPIQ  + P +L + DV GIA+TG+GKT +F +P + +L         +KGR +V 
Sbjct: 193 FEKPTPIQACSWPALLSKKDVVGIAETGSGKTLAFGVPGINLLSQLPPVTGSKKGRGQVP 252

Query: 72  -MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-ERGADVLICT 129
              + L+L PTRELA Q  ++   +G+   L    + GG+  + Q ++L ++   V++ T
Sbjct: 253 GQIQMLVLAPTRELAQQSHEHLSAFGEQVGLKSVCIFGGVGKDGQARELSQKDTRVVVGT 312

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF---TRQTLLFSAT 186
           PGR LD  + G+L ++++  LV+DEADRMLD GF   I+ I +  P     RQT++FSAT
Sbjct: 313 PGRTLDLADSGELDLSSVSYLVLDEADRMLDAGFENDIRRIIAHTPGHKEGRQTVMFSAT 372

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQL------- 238
             + +++++  FL NP RI V +   +A + IE           K   L   L       
Sbjct: 373 WPESVRRLASTFLNNPLRITVGSDELSANKRIEQIVEVLDNPRDKDFRLTHHLKAHLKVH 432

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S+ +    ++F   KK    L +++ + G++V A+HG++ Q +R K L  FK G   +
Sbjct: 433 PNSKTSPTRILVFALYKKEAQRLEYTIRRAGYAVGALHGDMTQEARFKALEAFKTGQQNV 492

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +VA+D+AARGLDIPDVG V N   P   E+++HR GRTGRAG+ GKA T    E+
Sbjct: 493 LVATDVAARGLDIPDVGLVINVTFPLTTEDFVHRCGRTGRAGKTGKAVTFFTGEN 547


>gi|11990882|dbj|BAB19807.1| vasa [Oreochromis niloticus]
          Length = 645

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 130/359 (36%), Positives = 203/359 (56%), Gaps = 14/359 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 207 MTFDEAALCESLKRNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 266

Query: 61  T-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G A      ++ P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 267 QQLMADGAAASCFSEMQEPDAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGVSTGH 326

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L RG +VL  TPGR+LD   RGK+ +  +  LV+DEADRMLDMGF P ++ +    
Sbjct: 327 QIRDLLRGCNVLCGTPGRLLDMIGRGKVGLTKVRYLVLDEADRMLDMGFEPDMRRLVGSP 386

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +++Q+++ +FL+     + V         +E  FV    +++
Sbjct: 387 GMPSKENRQTLMFSATFPEDIQRLAADFLKTDYLFLAVGIVGGACSDVEQTFVQV-TKFA 445

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  L+  LL+S  + +  ++F   K+    +   L ++ F   +IHG+ +Q  R + L 
Sbjct: 446 KREQLID-LLKSTGSERT-MVFVETKRQADFIATILCQEKFPTTSIHGDREQWQREQALG 503

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +F+ G   ++VA+ + ARGLDIPDV  V NFD+PN  + Y+HRIGRTGR G  G+A + 
Sbjct: 504 DFRSGKCSVLVATSVGARGLDIPDVQFVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSF 562


>gi|88859266|ref|ZP_01133906.1| ATP-dependent RNA helicase, DEAD box family protein
           [Pseudoalteromonas tunicata D2]
 gi|88818283|gb|EAR28098.1| ATP-dependent RNA helicase, DEAD box family protein
           [Pseudoalteromonas tunicata D2]
          Length = 449

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 129/376 (34%), Positives = 213/376 (56%), Gaps = 7/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G+  +++  +   G   PT +Q + IP+ L   D+   ++TG+GKT +F++P L  
Sbjct: 12  FEEFGIDKRLLTQLAHQGITSPTDVQQQAIPVALSGQDLFVQSKTGSGKTLAFLVPALQR 71

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I+++     R PR +I+ PTRELA QV           N+    ++GG  F  Q K L++
Sbjct: 72  IIKQKPLSKRDPRAVIITPTRELANQVFAQLRLLVAGSNIVATKILGGDNFNDQIKALKK 131

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPFTRQT 180
              V++ TPGR+ DH  +    +  +E+L+IDEADR++D+GF   I  I T      RQT
Sbjct: 132 DPHVIVATPGRLADHIKQKSCFLAGLELLIIDEADRIMDLGFKAEIDLINTEANHRLRQT 191

Query: 181 LLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQL 238
           LLFSAT+   ++  +S N L++PK++ ++  +     I ++ F A    +  K ALL   
Sbjct: 192 LLFSATLEHSQIDALSRNLLKSPKKVTLSQSNEEHTDITQNMFFADNLLH--KEALLAHF 249

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S+  +   I+F   +++   L   +  +G S  A+ G++ Q  R+ I+ +F  G  Q+
Sbjct: 250 L-SKPNIGQCIVFTATREDTYRLSELISGKGLSSQALAGDMPQSKRLSIMDSFSRGQSQV 308

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +D+A+RGLD+ +V HV NFD+P +AE Y+HRIGRTGRAG  G A + V  +D     
Sbjct: 309 LITTDIASRGLDLLNVTHVINFDLPKQAEEYVHRIGRTGRAGFKGHAISFVGPKDWDSFV 368

Query: 359 AIEKLIEKKVDWLNGD 374
           AI+  ++ ++ +L  D
Sbjct: 369 AIKAFLQHEITFLTVD 384


>gi|169781778|ref|XP_001825352.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Aspergillus
           oryzae RIB40]
 gi|91207409|sp|Q2U2J6|PRP5_ASPOR RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|83774094|dbj|BAE64219.1| unnamed protein product [Aspergillus oryzae]
          Length = 1186

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 131/373 (35%), Positives = 207/373 (55%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  + +  +   GY  PT IQ + IP ++   DV G+A+TG+GKT +F++PM   
Sbjct: 556 WSQCGLGVQTLDVIDRLGYSAPTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRH 615

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++  R    M  P  LI+ PTRELA Q+  + + + K  NL      GG P + Q   L+
Sbjct: 616 IKDQRPLENMEGPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLK 675

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I + V   
Sbjct: 676 RGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILANVRPD 735

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QT+LFSAT    ++ ++   L  P  I V   S  A  I    V   ++  K   LL+ 
Sbjct: 736 KQTVLFSATFPRNMEALARKTLNKPVEIVVGGRSVVAPEITQ-IVEVRSEDKKFIRLLEL 794

Query: 238 L--LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L  L S D  ++   +IF  +++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 795 LGNLYSTDENEDARALIFVERQEGADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKA 854

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 855 GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 914

Query: 354 IKHIDAIEKLIEK 366
            ++   I K +++
Sbjct: 915 ERYSVDIAKALKQ 927


>gi|212528762|ref|XP_002144538.1| ATP-dependent RNA helicase, putative [Penicillium marneffei ATCC
           18224]
 gi|210073936|gb|EEA28023.1| ATP-dependent RNA helicase, putative [Penicillium marneffei ATCC
           18224]
          Length = 452

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 129/347 (37%), Positives = 198/347 (57%), Gaps = 9/347 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML--TILEKGRARVRMPRTLIL 78
           +  PT +Q  T PL+    DV GIA+TG+GKT +F LP +   +  K + +   PR +IL
Sbjct: 107 FSAPTSVQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCVKNMVDSKKKLKPSHPRAVIL 166

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA Q+ +  E Y    ++ V  + GG+  + Q + L+  A +++ TPGR+ D  +
Sbjct: 167 TPTRELAMQIYEQLEGYAPRVSVRVTCIFGGVRKDEQREALKDTA-IVVATPGRLKDLES 225

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR-QTLLFSATMTDELQKVSEN 197
            G + ++ ++ LV+DEADRMLD GF   I++I + +P +R QT +F+AT    ++ ++ +
Sbjct: 226 EGAINLSKVKYLVLDEADRMLDKGFEQDIKDIVAPMPVSRRQTAMFTATWPVSVRNLANS 285

Query: 198 FLQNPKRIEVNTPSST---AETIEHCFVATYAQYSKKCALLQQL--LQSQDTMKNGIIFC 252
           F Q+P  + V    S    A T     V       K+  L Q L  L  + +    ++FC
Sbjct: 286 FTQDPVMVTVGGKPSEDPRANTRIKQVVEVLDGRDKENRLTQILAKLTRESSQGKILVFC 345

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             KK  + +   ++ +G++V  IHG++ Q  R K L++FK G + ++VA+D+AARGLDIP
Sbjct: 346 LYKKEAMRIERLIQSRGYAVAGIHGDLSQSDRFKSLASFKSGAVPILVATDVAARGLDIP 405

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            V  V N   P   E+Y+HRIGRTGRAG  G A TL  + D  H  A
Sbjct: 406 AVKTVVNVTFPLTIEDYVHRIGRTGRAGADGHAITLFTENDKAHSGA 452


>gi|268573672|ref|XP_002641813.1| C. briggsae CBR-INF-1 protein [Caenorhabditis briggsae]
 gi|187026294|emb|CAP34430.1| CBR-INF-1 protein [Caenorhabditis briggsae AF16]
          Length = 402

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 126/376 (33%), Positives = 201/376 (53%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L  +++  +   G+ KP+ IQ + I       DV   AQ+GTGKTA+F + +L  
Sbjct: 31  FDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQR 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     V+    L++ PTRELA Q+       G+  N+ +   IGG       +KLE G
Sbjct: 91  IDHSDPHVQ---ALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLENG 147

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D  NR  L  + I++ V+DEAD ML  GF   I ++   +P   Q +L
Sbjct: 148 IHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYDVFRSMPQDVQVVL 207

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  E+  V++ F++NP RI V     T E I   ++       K   L    L + 
Sbjct: 208 LSATMPAEVLDVTDRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCD--LYNV 265

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   +IFCN ++ V  L   +  + F+V  +HG++DQ  R  I+  F+ G+ ++++ +
Sbjct: 266 VNVTQAVIFCNTRRKVDQLTEQMTSKQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITT 325

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V + D + +  IE 
Sbjct: 326 DILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEIET 385

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +   ++ L
Sbjct: 386 YYTTQIEEMPESIADL 401


>gi|310800687|gb|EFQ35580.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 401

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   GY  P+ +Q + I  V +  D    AQ+GTGKTA+F + ML +
Sbjct: 29  FESMSLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQV 88

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 89  IDTA---VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYG 145

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 146 QHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVV 205

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 206 VSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTL- 264

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG++ Q+ R  I+ +F++G  +++
Sbjct: 265 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVL 320

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 321 ISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRD 380

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 381 IELYYSTQIDEMPMNVADL 399


>gi|308807515|ref|XP_003081068.1| DEAD-box protein abstrakt (ISS) [Ostreococcus tauri]
 gi|116059530|emb|CAL55237.1| DEAD-box protein abstrakt (ISS) [Ostreococcus tauri]
          Length = 1030

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 126/362 (34%), Positives = 202/362 (55%), Gaps = 15/362 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           +A  GLS ++   +   G+ KP PIQ + +P+++   D  GIA+TG+GKT +++LPML  
Sbjct: 332 WAHAGLSGRIHELIRRCGFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAYILPMLRH 391

Query: 61  ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L+ G      P  +I+ PTREL  Q+    ++YGK        + GG    AQ 
Sbjct: 392 INAQEPLKNGDG----PIGMIMGPTRELVTQIGKEAKRYGKALGFNAVSVYGGSGIAAQI 447

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNN---IEILVIDEADRMLDMGFIPYIQNITSL 173
            +L+RGA+++ CTPGR++D    G   + N   +  +V+DEADRM DMGF P I  I + 
Sbjct: 448 GELKRGAEIVACTPGRMIDILTTGGGKITNLRRVTYIVLDEADRMFDMGFEPQITRILAN 507

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +   RQT++FSAT    ++ ++   L+NP  I++   S     I+   V    +  +   
Sbjct: 508 LRPDRQTVMFSATFPHTMEALARAALENPVEIQIGGKSVVNSDIDQV-VEIRPEEDRFLR 566

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +L+ L +  +  K  IIF   +    +    L K G+   ++HG+ +Q  R   +S+FK 
Sbjct: 567 VLELLGEWCERGKI-IIFVASQDKADSTFKELLKSGYPCLSLHGSKEQSDRHSTISDFKS 625

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
               ++VA+ +AARGLD+ D+  V N+D PN  E+Y+HR+GRTGRAG+ G A T +++++
Sbjct: 626 DVCNILVATSVAARGLDVKDLRLVINYDTPNHLEDYVHRVGRTGRAGQKGTAVTFISEDE 685

Query: 354 IK 355
            K
Sbjct: 686 EK 687


>gi|318056099|gb|ADV36250.1| Vasa [Gadus morhua]
          Length = 644

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 130/348 (37%), Positives = 199/348 (57%), Gaps = 14/348 (4%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L  ++  G A      
Sbjct: 223 VAKSGYVKPTPVQKHGIPIIAAGRDIMACAQTGSGKTAAFLLPILQKLMADGVAASSFSE 282

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   +L GGI    Q + L RG +VL  T
Sbjct: 283 QQEPEAIIVAPTRELINQIFLEARKFAHGTCVRPVVLYGGISTGHQIRDLLRGCNVLCGT 342

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   RGK+ +  +  LV+DEADRMLDMGF P ++ +           RQTL+FSA
Sbjct: 343 PGRLMDMIGRGKVGLTKLRYLVMDEADRMLDMGFEPEMRRLVGSPGMPSKEERQTLMFSA 402

Query: 186 TMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +++Q+++ +FL+     + V         +E   V    ++SK+  LL  +L++  T
Sbjct: 403 TYPEDIQRMAGDFLKKDYLFLAVGVVGGACSDVEQKLVQV-TKFSKRDQLLD-ILKNTGT 460

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   K+    +   L ++  +  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 461 ERT-MVFVETKRQADFIAAFLCRENVATTSIHGDREQREREQALGDFRSGKCPVLVATSV 519

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           AARGLDI DV HV NFD+PN  ++Y+HRIGRTGR G  G+A +    E
Sbjct: 520 AARGLDIKDVQHVVNFDLPNNIDDYVHRIGRTGRCGNTGQAVSFYDPE 567


>gi|297560235|ref|YP_003679209.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844683|gb|ADH66703.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 489

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 126/389 (32%), Positives = 209/389 (53%), Gaps = 11/389 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +  ++   +   G   P+ IQ  T+P  L   DV G +QTG+GKT +F L +L  
Sbjct: 62  FEDLEMPAQLKSTLARQGLTTPSAIQAATLPNSLAGRDVLGRSQTGSGKTLAFGLALLAR 121

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE   A  R P  ++L PTRELA QV D+   Y ++  +    ++GG+P   Q++ L +G
Sbjct: 122 LEGRVAEPRRPLAVVLAPTRELAQQVNDSLAPYARSLRVRTTTVVGGMPISRQSRALRQG 181

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++++ TPGR+ D   R   +++ +++ V+DEAD+M DMGF+P +  I + VP   Q +L
Sbjct: 182 VELVVATPGRLRDLMERDDCVLDQVDVTVLDEADQMTDMGFMPQVTAILTEVPTGGQRML 241

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   FL +P    V+       T+EH  +  +  ++ K     Q   ++
Sbjct: 242 FSATLDRNVDTLVRRFLNDPVVHSVDPSEGAVSTMEHHVL--HVSHADK-----QDAATR 294

Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++G  I+F + K  V  +   L   G     +HG   Q  R + L  FKEGT+  +V
Sbjct: 295 IAARDGQVILFLDTKHAVDRMAKHLLNSGVRAAPLHGGRSQPQRTRTLKQFKEGTVTALV 354

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+++AARG+ +  +  V N D P   ++Y+HR GRT RAG+ G   TLV   + + +D +
Sbjct: 355 ATNVAARGIHVDGLDLVVNIDPPTDHKDYLHRGGRTARAGQTGSVVTLVLPSERRDMDRL 414

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
            +L   ++D     +S+ +P L ++  A+
Sbjct: 415 MRL--ARIDAHVAQVSASDPELARVTGAR 441


>gi|187779628|ref|ZP_02996101.1| hypothetical protein CLOSPO_03224 [Clostridium sporogenes ATCC
           15579]
 gi|187773253|gb|EDU37055.1| hypothetical protein CLOSPO_03224 [Clostridium sporogenes ATCC
           15579]
          Length = 421

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 210/362 (58%), Gaps = 8/362 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L PK++  +       PT IQ KTIPL ++  D+ G ++TGTGKT +++LP   I
Sbjct: 5   FDKLNLEPKLIEGLKKLNINIPTEIQEKTIPLAMENKDIIGQSETGTGKTLAYLLP---I 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA--LLIGGIPFEAQNKKLE 120
            +K     R  + +IL PT ELA Q+ +  +    N N+ V    +IG    + Q +KL+
Sbjct: 62  FKKINTEKREMQAIILAPTHELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ +PGRIL+   + K+  + ++ +VIDE D++LD   +  ++++       RQ 
Sbjct: 122 EKPHIIVGSPGRILELIKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKDVIKATLRERQL 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+T+    ++++ ++ P+ ++V   ++  E I+H ++    ++ ++  +L++L+ 
Sbjct: 182 MLFSATITESTLNIAKDLMKEPQIVKVKEKNTVNENIKHLYIT--GEHRERIEILRKLIA 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +  K  I+F N+ + +      L+        I+G  ++  R K L +F+ G IQ++V
Sbjct: 240 ATNP-KRAIVFINRNEEIELTTLKLQYHKIKAYGIYGAAEKEQRKKALEDFRLGKIQILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +SDL+ARGLD+ DV H+FN D+P   + Y+HR+GRTGRA + G A +++ +++I  I   
Sbjct: 299 SSDLSARGLDVKDVTHIFNLDLPENPKEYLHRVGRTGRASKEGTAISIITEKEIPLIRKY 358

Query: 361 EK 362
           EK
Sbjct: 359 EK 360


>gi|134111599|ref|XP_775335.1| hypothetical protein CNBE0530 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257994|gb|EAL20688.1| hypothetical protein CNBE0530 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 605

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 133/355 (37%), Positives = 203/355 (57%), Gaps = 22/355 (6%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL---------EKGRARVR 71
           + KPTPIQ  + P +L + DV GIA+TG+GKT +F +P + +L         +KGR +V 
Sbjct: 193 FEKPTPIQACSWPALLSKKDVVGIAETGSGKTLAFGVPGINLLSQLPPVTGSKKGRGQVP 252

Query: 72  -MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-ERGADVLICT 129
              + L+L PTRELA Q  ++   +G+   L    + GG+  + Q ++L ++   V++ T
Sbjct: 253 GQIQMLVLAPTRELAQQSHEHLSAFGEQVGLKSVCIFGGVGKDGQARELSQKDTRVVVGT 312

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF---TRQTLLFSAT 186
           PGR LD  + G+L ++++  LV+DEADRMLD GF   I+ I +  P     RQT++FSAT
Sbjct: 313 PGRTLDLADSGELDLSSVSYLVLDEADRMLDAGFENDIRRIIAHTPGHKEGRQTVMFSAT 372

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQL------- 238
             + +++++  FL NP RI V +   +A + IE           K   L   L       
Sbjct: 373 WPESVRRLASTFLNNPLRITVGSDELSANKRIEQIVEVLDNPRDKDFRLTHHLKAHLKVH 432

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S+ +    ++F   KK    L +++ + G++V A+HG++ Q +R K L  FK G   +
Sbjct: 433 PNSKTSPTRILVFALYKKEAQRLEYTIRRAGYAVGALHGDMTQEARFKALEAFKTGQQNV 492

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +VA+D+AARGLDIPDVG V N   P   E+++HR GRTGRAG+ GKA T    E+
Sbjct: 493 LVATDVAARGLDIPDVGLVINVTFPLTTEDFVHRCGRTGRAGKTGKAVTFFTGEN 547


>gi|189211147|ref|XP_001941904.1| ATP-dependent RNA helicase DBP3 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187977997|gb|EDU44623.1| ATP-dependent RNA helicase DBP3 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 601

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 127/343 (37%), Positives = 191/343 (55%), Gaps = 10/343 (2%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK-GRARVRMPRTLI 77
           A +  PTPIQ  T P +L   D+ G+A+TG+GKT +F +P +  +    + + +  + +I
Sbjct: 205 AKFSAPTPIQAATWPFLLSGRDMVGVAETGSGKTLAFGVPCVRYISALPQEKRKGIKAVI 264

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           + PTRELA Q+ D          L+V  + GG+P + Q     R A +++ TPGR+ D  
Sbjct: 265 VSPTRELAVQIYDQLVALATPAGLSVVCVYGGVPKDPQVAAC-RKAHIVVATPGRLNDLI 323

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
             G   ++  E +V+DEADRMLD GF   I+ I S  P  RQTL+F+AT    ++ ++  
Sbjct: 324 GEGSADLSKAEYVVLDEADRMLDKGFEEAIRQIISQTPKKRQTLMFTATWPPSVRDLAST 383

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG-------II 250
           F+ +P +I +   + + E   +  +    +     A  Q+LLQ     ++G       ++
Sbjct: 384 FMNSPVKITIGD-NQSGELRANVRIKQVVEVVDPRAKEQRLLQLLKQYQSGKNKDDRILV 442

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           FC  KK  V + + +  +GF V  IHG++ Q  R   L+ FKEG + L+VA+D+AARGLD
Sbjct: 443 FCLYKKEAVRIENFIRMKGFRVGGIHGDLSQEKRSASLAAFKEGHVPLLVATDVAARGLD 502

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           IP V  V N   P  AE+Y+HRIGRTGRAG+ G A TL    D
Sbjct: 503 IPAVKVVINVTFPLTAEDYVHRIGRTGRAGKEGLAITLFTDHD 545


>gi|121701983|ref|XP_001269256.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
 gi|143359917|sp|A1CQA9|PRP5_ASPCL RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|119397399|gb|EAW07830.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
          Length = 1192

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 132/373 (35%), Positives = 207/373 (55%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  + +  +   GY  PT IQ + IP ++   DV G+A+TG+GKT +F++PM   
Sbjct: 559 WSQCGLGVQALDVIERLGYESPTSIQSQAIPAIMSGRDVIGVAKTGSGKTVAFLIPMFRH 618

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++  R    M  P  LI+ PTRELA Q+  + + + K  NL      GG P + Q   L+
Sbjct: 619 IKDQRPLDNMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLK 678

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I + +   
Sbjct: 679 RGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPD 738

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT    ++ ++   L  P  I V   S  A  I    V    + +K   LL+ 
Sbjct: 739 RQTVLFSATFPRNMEALARKALTKPIEIIVGGRSVVAPEITQ-IVEVRNEDTKFVRLLEI 797

Query: 238 L--LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L  L S D  ++   +IF  +++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 798 LGNLYSDDANEDARSLIFVERQEAADALLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKA 857

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + +E 
Sbjct: 858 GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQ 917

Query: 354 IKHIDAIEKLIEK 366
            ++   I K +++
Sbjct: 918 ERYSVDIAKALKQ 930


>gi|312128901|ref|YP_003996241.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311905447|gb|ADQ15888.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 438

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 132/356 (37%), Positives = 204/356 (57%), Gaps = 14/356 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  ++ A+ D  +  PTPIQ K   +++   D+ GIA+TGTGKT +++LP+L
Sbjct: 1   MQFSELNLNKPLLRALEDLQFSSPTPIQEKVFSVLMSGRDLAGIARTGTGKTFAYLLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +     ++ ++P+ L+L PTREL  QV ++ +      +  V  + GG+  ++Q  +L 
Sbjct: 61  RMWT--FSKDKLPQILVLVPTRELVMQVVESAKALSTYMSFDVVGVYGGVNMKSQAAELM 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TPGR  D    G L + NI+ LVIDE D MLD+GF P +  I + +P  RQ 
Sbjct: 119 QGCDMVVATPGRFTDLAAAGVLKVKNIKKLVIDEFDMMLDLGFRPQLDLIFNKIPERRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYA--QYSKKCALL 235
           LLFSAT+++E+  +  +  + P  IE   + TP      IE     TYA   +  K  LL
Sbjct: 179 LLFSATLSEEVGSLIGDIFKTPIIIEDDDIGTP------IESILQKTYAVPNFKTKINLL 232

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF-SVCAIHGNIDQRSRMKILSNFKEG 294
             LL +   M+  +IF  QK     L   L+ +G  SV  IH N  Q  R + + +F +G
Sbjct: 233 DLLLGNDPDMQKNLIFVAQKSAADLLFQELKSRGMESVEVIHSNKSQNYRFRAIKSFSDG 292

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
            I+ ++++D+ +RGLDI  + HV N DVP    +Y+HRIGRTGR G  G A + V+
Sbjct: 293 EIKTLISTDIGSRGLDIKGITHVVNMDVPTEKTDYVHRIGRTGRGGNSGTAISFVS 348


>gi|116787191|gb|ABK24405.1| unknown [Picea sitchensis]
          Length = 408

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 203/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G+   ++  +   G+ KP+ IQ + +  ++   DV   AQ+GTGKT+   L +  I
Sbjct: 37  FDQMGIRDDLLRGIYQYGFEKPSAIQQRAVMPIINGRDVIAQAQSGTGKTSMIALAVCQI 96

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     +R  + LI+ PTRELAAQ        G   N+     IGG       +KLE G
Sbjct: 97  IDTS---IREVQALIVSPTRELAAQTEKVILAIGDFINVQAHACIGGKSIGEDIRKLEYG 153

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    +++LV+DE+D ML  GF   I ++   +P   Q +L
Sbjct: 154 VHVVSGTPGRVCDMIKRRTLRTRAVKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVL 213

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 214 ISATLPHEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 272

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   +    F+V ++HG++ Q+ R  I++ F+ GT +++
Sbjct: 273 ----TITQAVIFCNTKRKVDWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFRAGTTRVL 328

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 329 ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDIRILRD 388

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 389 IEQYYSTQIDEMPMNVADL 407


>gi|168009407|ref|XP_001757397.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691520|gb|EDQ77882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 482

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 130/342 (38%), Positives = 198/342 (57%), Gaps = 9/342 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP----MLTILEKGRARVRMPRT 75
           G+ KP+PIQ    P +L   D+ GIA TG+GKT +F +P    +L  + K + +   P  
Sbjct: 80  GFEKPSPIQGHAWPFLLAGRDLIGIAATGSGKTLAFGIPAMKHVLDKITKTKGKKAAPVC 139

Query: 76  LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           L+L PTRELA Q+AD  E+ G    + V  + GG P   Q   L+ GA V++ TPGR+ D
Sbjct: 140 LVLAPTRELAQQIADVLEESGSACGVGVVCVYGGTPKGPQRSALKAGARVVVATPGRLQD 199

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
               G   ++ +  +V+DEADRMLD+GF P I+ I S     RQT++FSAT    + K++
Sbjct: 200 LMEEGVCSLDQVTYVVLDEADRMLDLGFEPAIRAILSTCCQVRQTVMFSATWPMAVSKLA 259

Query: 196 ENFL--QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG--IIF 251
             F+  ++P ++ V +    A       V      ++  A L+ LLQ     +    ++F
Sbjct: 260 MEFMNEKDPVKVMVGSQDLAANHDVTQIVEVIEDRARD-ARLETLLQKYHKSRTNRVLVF 318

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
              KK  V +  +L+++G+ V A+HG+  Q  R + +++FK+GT  L++A+D+AARGLDI
Sbjct: 319 VLYKKEAVRVETALQRRGWKVSAVHGDKGQSDRTRAVNSFKDGTRPLLIATDVAARGLDI 378

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           PDV +V N+  P   E+Y+HRIGRTGRAG+ G + T   + D
Sbjct: 379 PDVEYVINYSFPLTTEDYVHRIGRTGRAGKKGLSHTFFTQAD 420


>gi|328781928|ref|XP_397101.4| PREDICTED: ATP-dependent RNA helicase DDX54-like [Apis mellifera]
          Length = 772

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 130/358 (36%), Positives = 206/358 (57%), Gaps = 8/358 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  ++  +L  GY  PTPIQ KTIPL L+  D+  +A+TG+GKTA F++P+   
Sbjct: 38  FQSMALSFPILKGILKRGYKIPTPIQRKTIPLALEGRDIVAMARTGSGKTACFLIPLFEK 97

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  +A+V   R LIL PTRELA Q     ++ G+   L   +++GG   E Q   +   
Sbjct: 98  LKIRQAKV-GARALILSPTRELALQTLKFIKELGRFTGLKATIILGGDNMENQFSAIHGN 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI TPGR L       L +NNIE +V DEADR+ +MGF   I  I + +P +RQTLL
Sbjct: 157 PDILIATPGRFLHICIEMDLQLNNIEYVVFDEADRLFEMGFGEQINEIINRLPESRQTLL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L   ++  L +P  + ++  +   E +   F+    +  +K A+L  LL  +
Sbjct: 217 FSATLPKLLVDFAKIGLNDPVLLRLDVENKIPEQLTLSFIICRPE--QKLAILLCLL--K 272

Query: 243 DTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +KN    +IF     +V  +   LEK G S   I+ N+D  +R    + F+   + ++
Sbjct: 273 NIIKNNTQTVIFAATMHHVEYIHQILEKAGISNTYIYSNLDASARKINAAKFQTNKVHVL 332

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           + +D+AARGLDIP + +V NF+ P +++ ++HR+GR  RAGR G A+ +V+ ++  ++
Sbjct: 333 IVTDVAARGLDIPHLDNVINFNFPAKSKLFVHRVGRCARAGRTGTAYNIVSPDEYAYL 390


>gi|315079878|gb|EFT51854.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
          Length = 491

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 190/347 (54%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LG+  ++V A+   G   P  IQI  IP  +   DV G A TG+GKT +F +P+L+ 
Sbjct: 22  FSALGVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSR 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L         PR LIL PTRELA Q+AD       +  L+  L+ GG+ +  Q K  +RG
Sbjct: 82  LSATPREDNRPRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFKRG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR++D    G   ++ + + V+DEAD M ++GF+  + +I   +P   Q LL
Sbjct: 142 VDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRLL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + K+   ++  P   EV+    +  T+ H   A   +  +K  L+ ++    
Sbjct: 202 FSATLDGAVNKLVRRYMHEPVIHEVDPDKGSVATMTHH--AFQIKPHEKVGLMCEIANRS 259

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
               + ++F   ++    +   L + G    A+HG + Q +R ++L+ FK+G++ ++VA+
Sbjct: 260 ---GHTVVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVAT 316

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+ DV  V   D P   ++Y+HR GRT RAG  G   +LV
Sbjct: 317 DVAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLV 363


>gi|296807861|ref|XP_002844269.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Arthroderma
           otae CBS 113480]
 gi|238843752|gb|EEQ33414.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Arthroderma
           otae CBS 113480]
          Length = 1183

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 205/373 (54%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  + +  +   GY  PT IQ + +P ++   DV G+A+TG+GKT +F+LPM   
Sbjct: 552 WSQCGLGVQTLDVIRKLGYEGPTSIQSQAVPAIMSGRDVIGVAKTGSGKTIAFLLPMFRH 611

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R    M  P +LI+ PTRELA Q+      + K  NL      GG P + Q  +L+
Sbjct: 612 IRDQRPLENMEGPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELK 671

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   +   
Sbjct: 672 RGAEIIVCTPGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRPN 731

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT    ++ ++   L  P  I V   S  A  I    V      +K   LL+ 
Sbjct: 732 RQTVLFSATFPRNMEALARKTLSKPVEIIVGGRSVVAPEITQ-IVEVRNDDAKFVRLLEL 790

Query: 238 L--LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L  L S D  ++   ++F ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 791 LGNLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKA 850

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 851 GIFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 910

Query: 354 IKHIDAIEKLIEK 366
            ++   I K +++
Sbjct: 911 ERYSVDISKALKQ 923


>gi|147785805|emb|CAN62124.1| hypothetical protein VITISV_037577 [Vitis vinifera]
          Length = 398

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 130/384 (33%), Positives = 205/384 (53%), Gaps = 14/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  +G+   ++  +   G+ KP+ IQ + +  ++Q  DV   AQ+GTGKT+   L + 
Sbjct: 22  MSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVLPIIQGRDVIAQAQSGTGKTSMIALTVC 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++     V+    LIL PTRELA+Q        G   N+     IGG       +KLE
Sbjct: 82  QMVDTSNREVQ---ALILSPTRELASQTEKVILAIGDFINIQAHACIGGKSVGEDIRKLE 138

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  ++  TPGR+ D   R  L    I++LV+DE+D ML  GF   I ++   +P   Q 
Sbjct: 139 YGVHIVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQV 198

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQ 237
           +L SAT+ +E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   
Sbjct: 199 VLISATLPNEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT 258

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L     T+   +IFCN K+ V  L   +    F+V ++HG++ Q+ R  I++ F+ GT +
Sbjct: 259 L-----TITQAVIFCNTKRKVDWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFRSGTTR 313

Query: 298 LMVASDLAARGLDIPDVGH---VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           +++ +D+ ARGLD+    H   V N+D+PN  E YIHRIGR+GR GR G A   V  +DI
Sbjct: 314 VLITTDVWARGLDVQQASHVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKTDDI 373

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL 378
           K +  IE+    ++D +  +++ L
Sbjct: 374 KILRDIEQYYSTQIDEMPMNVADL 397


>gi|195437123|ref|XP_002066494.1| GK18312 [Drosophila willistoni]
 gi|194162579|gb|EDW77480.1| GK18312 [Drosophila willistoni]
          Length = 1424

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 120/335 (35%), Positives = 196/335 (58%), Gaps = 10/335 (2%)

Query: 19   AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKG-RARVRMPRTL 76
            + Y  PTPIQ  +IP++    D+   AQTG+GKTA+F+LP+L  IL+KG    +  P+ +
Sbjct: 1031 SAYTVPTPIQKVSIPVISAGRDLMACAQTGSGKTAAFLLPILNHILDKGYELEIGKPQAI 1090

Query: 77   ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
            I+ PTRELA Q+ +   K+  N  L + ++ GG   + QN+ + +G  +LI TPGR+LD 
Sbjct: 1091 IMSPTRELAVQIFNEARKFAHNSYLKITIVYGGTSVKYQNESITKGCHILIATPGRLLDF 1150

Query: 137  FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR---QTLLFSATMTDELQK 193
              R  +   +   +V+DEADRMLDMGF   ++ I +  P  R   QTL+FSAT  +E+Q+
Sbjct: 1151 VERTFITFEDTRFVVLDEADRMLDMGFSESMRKIITH-PTMRKEHQTLMFSATFPEEIQR 1209

Query: 194  VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
            ++  FL++   + +         +    +    +++K+  L++ L   +D     I+F  
Sbjct: 1210 MAGEFLRDYVFVTIGVIGGACSDVTQT-IYEVDKFNKRAKLMEIL---RDGADGTIVFVE 1265

Query: 254  QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
             K+    L     +  F   +IHG+  Q  R + L  FK G +++++A+ +A+RGLDI +
Sbjct: 1266 TKRGADFLASFFSETEFPTTSIHGDRLQSQREQALREFKSGKMKVLIATSVASRGLDIKN 1325

Query: 314  VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            V HV N+D+P+  ++Y+HRIGRTGR G +G+A + 
Sbjct: 1326 VSHVINYDMPSTIDDYVHRIGRTGRVGNNGRATSF 1360


>gi|146421825|ref|XP_001486856.1| hypothetical protein PGUG_00233 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 534

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 129/338 (38%), Positives = 194/338 (57%), Gaps = 6/338 (1%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTLILE 79
           + KPTPIQ  + P +L   DV G+A+TG+GKT +F +P +  I+   +  +R+   L + 
Sbjct: 149 FPKPTPIQSASWPYLLNGDDVVGVAETGSGKTFAFGVPAINNIITDNKKGLRV---LCIS 205

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA Q+ DN     KN  LT   + GG+P + Q K + + A V++ TPGR++D  N 
Sbjct: 206 PTRELALQIYDNLTMLTKNCGLTCVAIYGGVPKDQQIKAV-KTASVVVATPGRLVDLLND 264

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
           G + ++ I+ LV+DEADRML+ GF   I+NI       RQTL+F+AT   E+++++  F+
Sbjct: 265 GAVDLSTIDYLVLDEADRMLEKGFEEDIKNIIGCTNKQRQTLMFTATWPKEVRELAATFM 324

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
               ++ +      A                K   L QLL+   + +  ++F   KK   
Sbjct: 325 NKAVKVSIGNRDELAANKRITQTVEVMDPRDKERRLLQLLRQYGSDQKILVFALYKKEAT 384

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            +   L + GF+V AIHG++ Q+ R   L +FK G   L++A+D+AARGLDIP+V  V N
Sbjct: 385 RVEAMLRRSGFNVAAIHGDLLQQQRTSALDSFKRGDSNLLLATDVAARGLDIPNVKVVIN 444

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
              P   E+Y+HRIGRTGRAG+ G A TL  + + KH+
Sbjct: 445 LTFPLTVEDYVHRIGRTGRAGQTGIAHTLFTEHE-KHL 481


>gi|14211584|dbj|BAB56110.1| vasa short form [Oreochromis niloticus]
          Length = 621

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 130/359 (36%), Positives = 203/359 (56%), Gaps = 14/359 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 183 MTFDEAALCESLKRNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 242

Query: 61  T-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G A      ++ P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 243 QQLMADGAAASCFSEMQEPDAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGVSTGH 302

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L RG +VL  TPGR+LD   RGK+ +  +  LV+DEADRMLDMGF P ++ +    
Sbjct: 303 QIRDLLRGCNVLCGTPGRLLDMIGRGKVGLTKVRYLVLDEADRMLDMGFEPDMRRLVGSP 362

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +++Q+++ +FL+     + V         +E  FV    +++
Sbjct: 363 GMPSKENRQTLMFSATFPEDIQRLAADFLKTDYLFLAVGIVGGACSDVEQTFVQV-TKFA 421

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  L+  LL+S  + +  ++F   K+    +   L ++ F   +IHG+ +Q  R + L 
Sbjct: 422 KREQLID-LLKSTGSERT-MVFVETKRQADFIATILCQEKFPTTSIHGDREQWQREQALG 479

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +F+ G   ++VA+ + ARGLDIPDV  V NFD+PN  + Y+HRIGRTGR G  G+A + 
Sbjct: 480 DFRSGKCSVLVATSVGARGLDIPDVQFVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSF 538


>gi|320580417|gb|EFW94640.1| Putative ATP-dependent RNA helicase [Pichia angusta DL-1]
          Length = 499

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 127/341 (37%), Positives = 197/341 (57%), Gaps = 8/341 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           Y KPTPIQ    P +L+  D+ G+A+TG+GKT +F +P +  L K  ++    + LI+ P
Sbjct: 110 YAKPTPIQAVVWPYLLKGRDMVGVAETGSGKTMAFGVPAVEHLLKSDSKAL--QVLIISP 167

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TRELA+Q+ DN  +      L    + GG+  + Q + ++R +  +I TPGR++D    G
Sbjct: 168 TRELASQIYDNLNELTAKVGLECVCVYGGVSKDDQRRAVKR-SQCVIATPGRLIDLIEDG 226

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200
            + ++ I  LV+DEADRML+ GF   I+ +  L    RQTL+F+AT   E+++++ NF+ 
Sbjct: 227 SISLDKINYLVLDEADRMLEKGFEEDIKKVMKLTNGNRQTLMFTATWPKEVRELAMNFMD 286

Query: 201 NPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG---IIFCNQKK 256
            P ++ +      +A       V       K+  LLQ L + Q   K     +IF   KK
Sbjct: 287 KPVKVTIGQRDELSANKRIQQIVEVVDPREKEQKLLQLLRKYQSGSKKDDKLLIFALYKK 346

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
               +  +L  +GFSV A+HG+++Q  R + L +FK G   +++A+D+AARGLDIP+V  
Sbjct: 347 EAARVEKTLTYKGFSVAALHGDLNQAQRTQALQDFKAGKHNILLATDVAARGLDIPNVKV 406

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           V N   P   E+Y+HRIGRTGRAG+ G + TL  + + KH+
Sbjct: 407 VINLTFPLTVEDYVHRIGRTGRAGQTGISHTLFTEHE-KHL 446


>gi|160380606|sp|A6ZXU0|DBP10_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP10; AltName: Full=DEAD
           box protein 10
 gi|151941964|gb|EDN60320.1| DEAD box protein [Saccharomyces cerevisiae YJM789]
 gi|190405046|gb|EDV08313.1| hypothetical protein SCRG_00534 [Saccharomyces cerevisiae RM11-1a]
 gi|256269702|gb|EEU04973.1| Dbp10p [Saccharomyces cerevisiae JAY291]
          Length = 995

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 133/418 (31%), Positives = 218/418 (52%), Gaps = 53/418 (12%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GLS  V+  +   G+ +PTPIQ KTIPL+LQ  D+ G+A+TG+GKTA+F+LPM+  
Sbjct: 139 FPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEK 198

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    ++   R +IL P+RELA Q  + F+ + +   L   LL GG   E Q   +   
Sbjct: 199 LKSHSGKI-GARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMTN 257

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV+I TPGR L       L + ++E +V DEADR+ +MGF   +  + + +P TRQTLL
Sbjct: 258 PDVIIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLASLPTTRQTLL 317

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-------------------- 222
           FSAT+ + L    +  L NP  + ++  +  +E +E  F+                    
Sbjct: 318 FSATLPNSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNADREANLLYILQEIIK 377

Query: 223 ---ATYAQYSK--------------------------KCALLQQLLQSQDTM---KNGII 250
              AT  Q  K                          K    +Q + + + +   K  I+
Sbjct: 378 IPLATSEQLQKLQNSNNEADSDSDDENDRQKKRRNFKKEKFRKQKMPAANELPSEKATIL 437

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F   + +V  +   L   G+ +  I+G +DQ +R + L NF+ G   ++V +D+AARG+D
Sbjct: 438 FVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLYNFRAGLTSILVVTDVAARGVD 497

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           IP + +V N+ +P  ++ ++HR+GRT RAG  G A+++VA+ ++ ++  +E  + +K+
Sbjct: 498 IPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLLDLELFLGEKI 555


>gi|308487516|ref|XP_003105953.1| CRE-INF-1 protein [Caenorhabditis remanei]
 gi|308254527|gb|EFO98479.1| CRE-INF-1 protein [Caenorhabditis remanei]
          Length = 402

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 126/376 (33%), Positives = 201/376 (53%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L  +++  +   G+ KP+ IQ + I       DV   AQ+GTGKTA+F + +L  
Sbjct: 31  FDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQR 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     V+    L++ PTRELA Q+       G+  N+ +   IGG       +KLE G
Sbjct: 91  IDHEDPHVQ---ALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLENG 147

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D  NR  L  + I++ V+DEAD ML  GF   I ++   +P   Q +L
Sbjct: 148 IHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYDVFRSMPQDVQVVL 207

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  E+  V++ F++NP RI V     T E I   ++       K   L    L + 
Sbjct: 208 LSATMPSEVLDVTDRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCD--LYNV 265

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   +IFCN ++ V  L   +  + F+V  +HG++DQ  R  I+  F+ G+ ++++ +
Sbjct: 266 VNVTQAVIFCNTRRKVDQLTEQMTNKQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITT 325

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V + D + +  IE 
Sbjct: 326 DILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEIET 385

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +   ++ L
Sbjct: 386 YYTTQIEEMPESIADL 401


>gi|88802866|ref|ZP_01118393.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
 gi|88781724|gb|EAR12902.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
          Length = 447

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 129/369 (34%), Positives = 218/369 (59%), Gaps = 12/369 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59
           + F+DLG++  +   + D   + PT IQ K IP+VL  + D+  +A+TGTGKTA+F LP+
Sbjct: 3   IHFSDLGINLALQQRLNDLKIITPTEIQEKVIPIVLNDKEDIVALAKTGTGKTAAFGLPL 62

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
           L +++     ++    +IL PTREL  Q+A N   + ++ + +++A L GGIP + Q ++
Sbjct: 63  LQLIDVNNDAIQ---AIILAPTRELGQQIAANLISFAEHTSQVSIATLCGGIPIKPQIER 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+    +++ TPGR+ D   R  + + +I   ++DEAD M+       + +I   +P  R
Sbjct: 120 LKEATHIIVATPGRLADLVKREAIDIKSISYFILDEADEMV-TALKEGLDSIIKEIPKAR 178

Query: 179 QTLLFSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           +T LF+AT+   L+++ +N++  PK  +IE N  +   + I+H +V       +K  +L 
Sbjct: 179 RTFLFTATLPGTLKQLIQNYMA-PKVIQIEANMTTLGHQGIDHQYVVVAP--IEKLEVLL 235

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L S+   + GIIFC  K  V  L  +L    FS  AIHG++ Q  R +I+  F++G I
Sbjct: 236 HFLNSKAGQR-GIIFCKTKAAVNKLSKNLAINKFSSGAIHGSLTQGIRDRIMGQFRDGYI 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+DLAARG+D+ D+ +V N+ +P+    Y+HR GRT RAG  G + T++ +E++K 
Sbjct: 295 DILVATDLAARGIDVKDLSYVVNYHLPDTYGAYVHRSGRTARAGASGLSLTIIQQEELKD 354

Query: 357 IDAIEKLIE 365
           I   EK ++
Sbjct: 355 ISDFEKALD 363


>gi|212539832|ref|XP_002150071.1| ATP dependent RNA helicase (Dbp10), putative [Penicillium marneffei
           ATCC 18224]
 gi|210067370|gb|EEA21462.1| ATP dependent RNA helicase (Dbp10), putative [Penicillium marneffei
           ATCC 18224]
          Length = 948

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 135/409 (33%), Positives = 221/409 (54%), Gaps = 45/409 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+ +++ A+   G+  PTPIQ KTIP+++   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 98  FQAMGLNAQLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIPMIEK 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +V + R LI+ P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 158 LKSHSGKVGV-RGLIMSPSRELALQTLKVVKELGRGTDLKAVLLVGGDSLEEQFGLMVGN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P TRQTLL
Sbjct: 217 PDIVIATPGRFLHLKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPATRQTLL 276

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
           FSAT+   L + +   LQ+P  I ++T    +  +++ F  T     K+ ALL  L    
Sbjct: 277 FSATLPKSLVEFARAGLQDPTLIRLDTEGKISPDLQNAFF-TVKTADKEGALLHILHDVI 335

Query: 239 ----------LQSQ------------------DTMKNG-----------IIFCNQKKNVV 259
                      +S                   D+ K G           IIF   K +V 
Sbjct: 336 KIPTGPTGVYFRSNEDDEEEEDGRRPRKRKRFDSNKAGKHTESPTKHSTIIFAATKHHVD 395

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            +   L + GF+V   +G++DQ +R   +  F+ G   ++V +D+AARG+DIP + +V N
Sbjct: 396 YIASMLREAGFAVSYAYGSLDQTARNIQVQRFRAGATHILVVTDVAARGIDIPILANVIN 455

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           +D P++ + ++HR+GRT RAG+ G +++LV   D  ++  ++  + +K+
Sbjct: 456 YDFPSQPKVFVHRVGRTARAGQKGWSYSLVRDADAPYLLDLQLFLGRKL 504


>gi|121726416|ref|ZP_01679690.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae V52]
 gi|153818171|ref|ZP_01970838.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae NCTC
           8457]
 gi|227812555|ref|YP_002812565.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
 gi|298499762|ref|ZP_07009568.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757]
 gi|121631164|gb|EAX63539.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae V52]
 gi|126511277|gb|EAZ73871.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae NCTC
           8457]
 gi|227011697|gb|ACP07908.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
 gi|297541743|gb|EFH77794.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757]
          Length = 428

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 202/368 (54%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A L     +P+ IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 23  MSFSSLALSADLIQA-LPKAITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++     G    L    L GG+    Q   L 
Sbjct: 82  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALA 137

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 138 ENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 197 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N  +L   L K G     +HG+  Q  R   L+ FK GT Q+++
Sbjct: 256 HQ--WPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLI 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+HG A +LV   ++  ++AI
Sbjct: 314 ATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNAI 373

Query: 361 EKLIEKKV 368
             L ++++
Sbjct: 374 RTLTQREL 381


>gi|302818865|ref|XP_002991105.1| hypothetical protein SELMODRAFT_132834 [Selaginella moellendorffii]
 gi|300141199|gb|EFJ07913.1| hypothetical protein SELMODRAFT_132834 [Selaginella moellendorffii]
          Length = 601

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 136/403 (33%), Positives = 225/403 (55%), Gaps = 28/403 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
           +F D+     ++  + +    +PTPIQ++ +P++L   D+ GIA TG+GKT  FVLP  M
Sbjct: 157 NFKDMRFPDPILRKLKEKSITRPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPLIM 216

Query: 60  LTILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYG-----KNY-NLTVALLIGGI 110
           L + E+  + +     P  L++ P+RELA Q  D  +++      KNY  L   L IGGI
Sbjct: 217 LALQEEQSSSLGGGEGPFGLVVCPSRELARQTFDVVQEFTNVLREKNYPELRSMLCIGGI 276

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + +++G  +++ TPGR+ D   + K+ ++  + L +DEADR++D+GF   I+ +
Sbjct: 277 DMRSQLEVVKKGVHIVVATPGRLKDMLAKKKMNLDRCKYLTLDEADRLIDLGFEEDIREV 336

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q  +++ L  P  + VN   + A  ++      Y +   
Sbjct: 337 FDHFKAQRQTLLFSATMPKKIQNFAKSALVKP--VVVNVGRAGAANLDVIQEVEYVKQEA 394

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K   L + LQ   T    +IFC  K +V ++   L  +G    AIHG  DQ  R   +++
Sbjct: 395 KIVYLLECLQK--TPPPVLIFCENKSDVDDIHEYLLVKGVGAVAIHGGKDQEEREYAIAS 452

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK+G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A + + 
Sbjct: 453 FKQGKKDVLVATDIASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATSFIN 512

Query: 351 KE-------DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
           K        D+KH      L+++    +   L++L+ P++ ++
Sbjct: 513 KNQSETILLDLKH------LLKEARQRIPPVLATLDDPMDNVE 549


>gi|258622228|ref|ZP_05717254.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM573]
 gi|258585552|gb|EEW10275.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM573]
          Length = 434

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 199/366 (54%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A L     +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 23  MSFSSLALSADLIQA-LPKEITQPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++     G    L    L GG+    Q   L 
Sbjct: 82  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTHVGTPLGLNTLCLCGGVDKTEQQNALA 137

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 138 ENPNILVATTGRLFDLTQSG-LSLNRVTTLVLDEADRLLDMGFWPQVQALASQTASVRQT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 197 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N   L   L K G    A+HG+  Q  R   L+ FK GT Q+++
Sbjct: 256 HQ--WPQVLVFIGAKENADGLTKKLNKAGIVATALHGDKSQAEREAALAEFKNGTTQVLI 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 314 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAI 373

Query: 361 EKLIEK 366
             L ++
Sbjct: 374 RTLTQR 379


>gi|302892891|ref|XP_003045327.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256726252|gb|EEU39614.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 596

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 134/356 (37%), Positives = 193/356 (54%), Gaps = 24/356 (6%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK--GRARVRMPRTL 76
           A Y  PTPIQ  + P  L   DV G+A+TG+GKT +F LP +  +    G++     + +
Sbjct: 194 ANYKTPTPIQAASWPFTLSARDVIGVAETGSGKTMAFALPCVEAVSAIGGKST----KAV 249

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           I+ PTRELA Q      +      L    L GG   + Q  +L RGAD+++ TPGR+ D 
Sbjct: 250 IVSPTRELAMQTHTQMAQVAALNGLKCVCLFGGASKDDQRAQLRRGADIIVATPGRLKDF 309

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTRQTLLFSATMTDELQKV 194
            +   + ++    +V+DEADRMLD GF   I+ I    P    RQTL+F+AT    +Q +
Sbjct: 310 MSDDTVDLSQAAFVVLDEADRMLDKGFEEDIKQILGSCPPREQRQTLMFTATWPQSVQAL 369

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQ---------QLLQS--Q 242
           + +F+ +P +I +   SS  ET      +   A+ S+   +L+         QLL+   Q
Sbjct: 370 ASSFMVSPVKITIG--SSGKETAGGAVELQANARISQSVEVLEPREKEFRLLQLLKEHQQ 427

Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              KN   ++FC  KK    + + L ++G  VC IHG++ Q  R K L  FK G   ++V
Sbjct: 428 GKQKNDRILVFCLYKKEATRVENFLSRKGVRVCGIHGDLRQEQRTKSLEAFKTGVTPVLV 487

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           A+D+AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG+ G+A T    ED  H
Sbjct: 488 ATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKTGQAITFFTVEDKSH 543


>gi|212534920|ref|XP_002147616.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|212534922|ref|XP_002147617.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|242791505|ref|XP_002481771.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
 gi|210070015|gb|EEA24105.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|210070016|gb|EEA24106.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|218718359|gb|EED17779.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 399

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 123/379 (32%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L +
Sbjct: 27  FEDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQV 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KLE G
Sbjct: 87  ID---TVVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEYG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 144 QHVVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVV 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 204 VSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTL- 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++
Sbjct: 263 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  +D++ +  
Sbjct: 319 ISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRD 378

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 379 IELYYSTQIDEMPMNVADL 397


>gi|302819961|ref|XP_002991649.1| hypothetical protein SELMODRAFT_236355 [Selaginella moellendorffii]
 gi|300140498|gb|EFJ07220.1| hypothetical protein SELMODRAFT_236355 [Selaginella moellendorffii]
          Length = 585

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 138/404 (34%), Positives = 229/404 (56%), Gaps = 30/404 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
           +F D+     ++  + +    +PTPIQ++ +P++L   D+ GIA TG+GKT  FVLP  M
Sbjct: 141 NFKDMRFPDPILRKLKEKSITRPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPLIM 200

Query: 60  LTILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYG-----KNY-NLTVALLIGGI 110
           L + E+  + +     P  L++ P+RELA Q  D  +++      KNY  L   L IGGI
Sbjct: 201 LALQEEQSSSLGSGEGPFGLVVCPSRELARQTFDVVQEFTNVLREKNYPELRSMLCIGGI 260

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + +++G  +++ TPGR+ D   + K+ ++  + L +DEADR++D+GF   I+ +
Sbjct: 261 DMRSQLEVVKKGVHIVVATPGRLKDMLAKKKMNLDRCKYLTLDEADRLIDLGFEEDIREV 320

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q  +++ L  P  + VN   + A  ++   V    +Y K
Sbjct: 321 FDHFKAQRQTLLFSATMPKKIQNFAKSALVKP--VVVNVGRAGAANLD---VIQEVEYVK 375

Query: 231 KCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A +  LL+  Q T    +IFC  K +V ++   L  +G    AIHG  DQ  R   ++
Sbjct: 376 QEAKIVYLLECLQKTPPPVLIFCENKSDVDDIHEYLLVKGVGAVAIHGGKDQEEREYAIA 435

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK+G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A + +
Sbjct: 436 SFKQGKKDVLVATDIASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATSFI 495

Query: 350 AKE-------DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
            K        D+KH      L+++    +   L++L+ P++ ++
Sbjct: 496 NKNQSETILLDLKH------LLKEARQRIPPVLATLDDPMDNVE 533


>gi|193664366|ref|XP_001952053.1| PREDICTED: eukaryotic initiation factor 4A-like [Acyrthosiphon
           pisum]
          Length = 411

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 127/370 (34%), Positives = 201/370 (54%), Gaps = 11/370 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L  +++  +   G+ KP+ IQ + I   ++ HDV   AQ+GTGKTA+F    ++
Sbjct: 39  NFDEMNLKEELLRGIYGYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTATF---SIS 95

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    +   + LIL PTRELA Q+       G          IGG       +KL+ 
Sbjct: 96  ILQQIDTSLNECQALILAPTRELAQQIQKVVIALGDFMKADCHACIGGTNVRDDMRKLDT 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G+ V++ TPGR+ D   R  L    I+I V+DEAD ML  GF   I+ +   +    Q +
Sbjct: 156 GSHVVVGTPGRVYDMIARKSLRTQFIKIFVLDEADEMLSRGFKDQIKEVFKFLEEDIQVI 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQL 238
           L SATM +++  VS +F++NP RI V     T E I+  ++    +   +   C L   L
Sbjct: 216 LLSATMPEDVLDVSTHFMRNPVRILVQKEELTLEGIKQFYINVTKEEWKFDTLCDLYDTL 275

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                ++   +IFCN ++ V  L  ++  + F+V A+HG +DQR R  I+  F+ G+ ++
Sbjct: 276 -----SITQAVIFCNTRRKVEWLTENMRLKTFTVSAMHGEMDQRQRELIMRQFRSGSSRV 330

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +DL ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   + ++D + + 
Sbjct: 331 LITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFITEDDKRAMK 390

Query: 359 AIEKLIEKKV 368
            IE      V
Sbjct: 391 DIESFYNTHV 400


>gi|19113775|ref|NP_592863.1| ATP-dependent RNA helicase, eIF4A related (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|1352438|sp|Q10055|FAL1_SCHPO RecName: Full=ATP-dependent RNA helicase fal1
 gi|1103737|emb|CAA92238.1| ATP-dependent RNA helicase, eIF4A related (predicted)
           [Schizosaccharomyces pombe]
          Length = 394

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 201/370 (54%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L   ++  +   GY  P+ +Q + I  + +  DV   AQ+GTGKTA+F + +L  
Sbjct: 23  FEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQS 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + LIL PTRELA Q+ +     G + N+     IGG       KKL+ G
Sbjct: 83  ID---LSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYG 139

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   N+++L++DEAD +L+ GF   I +I   +P   Q ++
Sbjct: 140 QHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVV 199

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++ +++  F  NP RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 200 VSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTL- 258

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++
Sbjct: 259 ----TITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVL 314

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 315 ICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRD 374

Query: 360 IEKLIEKKVD 369
           IE+     +D
Sbjct: 375 IEQYYSTVID 384


>gi|116672314|ref|YP_833247.1| DEAD/DEAH box helicase domain-containing protein [Arthrobacter sp.
           FB24]
 gi|116612423|gb|ABK05147.1| DEAD/DEAH box helicase domain protein [Arthrobacter sp. FB24]
          Length = 635

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 132/385 (34%), Positives = 203/385 (52%), Gaps = 13/385 (3%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA LG +PK +   L A G  +P PIQ+KT+P  L   DV G  +TG+GKT +F +P++ 
Sbjct: 4   FAGLG-TPKELADTLTAQGITEPFPIQVKTLPDTLAGRDVLGRGRTGSGKTIAFAIPLVA 62

Query: 62  ILEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L +  A+       P  L+L PTRELA Q+    E   K   L   ++ GGI    Q K
Sbjct: 63  RLAEREAKHFRKPGRPMGLVLAPTRELATQINATIEPMAKAMGLNTTVIYGGISQARQEK 122

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D++I  PGR+ D   +  L +  +E+ V+DEAD M D+GF+P ++ +  + P  
Sbjct: 123 ALRAGVDIVIACPGRLEDLIRQRILTLEAVEVTVLDEADHMADLGFLPVVKKLMDMTPSQ 182

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q LLFSAT+ + + K+ + +L NP    V+ P +   T+EH  +    Q  KK    Q 
Sbjct: 183 GQRLLFSATLDNGVDKIVQRYLSNPLTHSVDDPQAAVTTMEHHVLVVNDQTVKK----QL 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++        ++F   K +   L  +L   G     +HGN+ Q +R + L+ F  G ++
Sbjct: 239 IVELASGAGRRVLFMRTKHHARKLAKTLTDAGIPAVDLHGNLSQNARDRNLAEFSSGDVR 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   TL   E     
Sbjct: 299 VLVATDVAARGVHVDDVELVIHVDPPTEHKAYLHRSGRTARAGSDGTVVTLTLPEQQSD- 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPL 382
             ++KL++     +N +  + N PL
Sbjct: 358 --VKKLMKAAGVEVNFERVTANSPL 380


>gi|302502646|ref|XP_003013284.1| hypothetical protein ARB_00469 [Arthroderma benhamiae CBS 112371]
 gi|291176847|gb|EFE32644.1| hypothetical protein ARB_00469 [Arthroderma benhamiae CBS 112371]
          Length = 1181

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 205/373 (54%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  + +  +   GY  PT IQ + +P ++   DV G+A+TG+GKT +F+LPM   
Sbjct: 527 WSQCGLGVQTLDVIRKLGYEGPTSIQSQAVPAIMSGRDVIGVAKTGSGKTIAFLLPMFRH 586

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R    M  P +LI+ PTRELA Q+      + K  NL      GG P + Q  +L+
Sbjct: 587 IRDQRPLENMEGPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELK 646

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   +   
Sbjct: 647 RGAEIIVCTPGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRPN 706

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT    ++ ++   L  P  I V   S  A  I    V      +K   LL+ 
Sbjct: 707 RQTVLFSATFPRNMEALARKTLSKPIEIIVGGRSVVAPEITQ-IVEVRNDDAKFVRLLEL 765

Query: 238 L--LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L  L S D  ++   ++F ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 766 LGNLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKA 825

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 826 GIFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 885

Query: 354 IKHIDAIEKLIEK 366
            ++   I K +++
Sbjct: 886 ERYSVDISKALKQ 898


>gi|171677330|ref|XP_001903616.1| hypothetical protein [Podospora anserina S mat+]
 gi|170936733|emb|CAP61391.1| unnamed protein product [Podospora anserina S mat+]
          Length = 652

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 139/364 (38%), Positives = 196/364 (53%), Gaps = 26/364 (7%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM---LTILEKGRA---RVRM 72
           A Y  PTPIQ  + P  L   D  GIA+TG+GKT +F LP    L+I  K  +   R   
Sbjct: 237 AAYNAPTPIQAASWPFTLAGRDAIGIAETGSGKTMAFALPCVEKLSIHSKKASKDYRSTR 296

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER--GADVLICTP 130
           PR +I+ PTRELA Q  +          LT   + GG   + Q   L +  GAD++  TP
Sbjct: 297 PRAVIVAPTRELAMQTHEAVSGLASQVGLTAVCIYGGASKDDQRALLRKNSGADIITATP 356

Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTRQTLLFSATMT 188
           GR+ D  +   + + ++   V+DEADRMLD GF   I+ I    P    RQTL+F+AT  
Sbjct: 357 GRLKDFLSDNTVNLGDVMFAVLDEADRMLDKGFEDDIKLILGGCPPKEERQTLMFTATWP 416

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAE------TIE-------HCFVATYAQYSKKCALL 235
             ++ ++E+F+ NP ++ +   +   E      T+E          V       K+  LL
Sbjct: 417 TSVRVLAESFMVNPVKVTIGNRTRAGEDGNSSGTVELQANSRIEQKVEVVDPRGKEQRLL 476

Query: 236 QQLLQSQD-TMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           + L ++Q  + KN   ++FC  KK  V +   LE++G  V +IHG++ Q  R K L  FK
Sbjct: 477 ELLREAQKGSAKNDRILVFCLYKKEAVRVEQFLERRGIRVASIHGDLRQDQRTKSLEAFK 536

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT  ++VA+D+AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG+ GKA TL  + 
Sbjct: 537 AGTTSVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKTGKAITLFTEH 596

Query: 353 DIKH 356
           D  H
Sbjct: 597 DKAH 600


>gi|85103782|ref|XP_961600.1| eukaryotic initiation factor 4A-12 [Neurospora crassa OR74A]
 gi|74625334|sp|Q9P735|FAL1_NEUCR RecName: Full=ATP-dependent RNA helicase fal-1
 gi|16415977|emb|CAB88547.2| probable translation initiation factor eIF-4A [Neurospora crassa]
 gi|28923147|gb|EAA32364.1| eukaryotic initiation factor 4A-12 [Neurospora crassa OR74A]
          Length = 400

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 121/379 (31%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + ML +
Sbjct: 28  FESMSLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQV 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 88  IDTA---VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYG 144

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 145 QHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVVV 204

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 205 VSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTL- 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG++ Q+ R  I+ +F++G  +++
Sbjct: 264 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 320 ISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRD 379

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 380 IELYYSTQIDEMPMNVADL 398


>gi|302308377|ref|NP_985263.2| AER408Wp [Ashbya gossypii ATCC 10895]
 gi|299789426|gb|AAS53087.2| AER408Wp [Ashbya gossypii ATCC 10895]
          Length = 398

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 125/382 (32%), Positives = 215/382 (56%), Gaps = 13/382 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+  P+ IQ + I  +++  DV   AQ+GTGKTA+F + ML +
Sbjct: 25  FESMKLQENLLRGIYGYGFEAPSAIQSRAITQIIRGKDVIAQAQSGTGKTATFTIGMLQV 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     ++    L+L PTRELAAQ++      G   N+      GG   +    K+ +G
Sbjct: 85  IDSSSKDLQ---ALVLSPTRELAAQISQVVRNLGDYMNVVALACTGGKALQQDISKVNKG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD--MGFIPYIQNITSLVPFTRQT 180
             V+  TPGR+LD   R  +   ++++LV+DEAD +L   +GF   + +I + +P + Q 
Sbjct: 142 CHVMSGTPGRVLDMIKRRIINTRHVKMLVLDEADELLSETLGFKQQLYDIFTKLPSSVQV 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT---YAQYSKKCALLQQ 237
           ++ SATM+ ++ +V++ F+ +P +I V     + E I+   +       ++   C L   
Sbjct: 202 VVVSATMSKDVLEVTKKFMSDPVKILVKRDEVSLEGIKQYHINVDKEEWKFDTLCDLYDS 261

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L     T+   +IFCN KK V  L H L +  F+V +IHG++ Q  R K++S+F+ G+ +
Sbjct: 262 L-----TITQCVIFCNTKKKVDWLSHKLIQNNFAVASIHGDMKQDDRDKVMSDFRSGSSR 316

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   + +E++  +
Sbjct: 317 VLISTDVWARGIDVQQVSLVINYDLPELLENYIHRIGRSGRFGRKGVAINFITREEVTKL 376

Query: 358 DAIEKLIEKKVDWLNGDLSSLN 379
            +IEK    K+  +  D+ SL+
Sbjct: 377 KSIEKHYSIKIKPMPADIDSLS 398


>gi|229505875|ref|ZP_04395384.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229356226|gb|EEO21144.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
          Length = 416

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 202/368 (54%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A L     +P+ IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 11  MSFSSLALSADLIQA-LPKAITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 69

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++     G    L    L GG+    Q   L 
Sbjct: 70  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALA 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 126 ENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 185 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N  +L   L K G     +HG+  Q  R   L+ FK GT Q+++
Sbjct: 244 HQ--WPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLI 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+HG A +LV   ++  ++AI
Sbjct: 302 ATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNAI 361

Query: 361 EKLIEKKV 368
             L ++++
Sbjct: 362 RTLTQREL 369


>gi|154336403|ref|XP_001564437.1| ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134061472|emb|CAM38500.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 803

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 130/359 (36%), Positives = 200/359 (55%), Gaps = 6/359 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL   ++ A+L  G+  PTPIQ K IP +LQ +DV  +A+TG+GKTA+F++PML  
Sbjct: 24  FQSFGLDKPLLDAILKKGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLNA 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  ++V   R L+L PTREL+ Q   N     +  +L  A L+GG   E Q + L   
Sbjct: 84  L-KAHSKVVGIRGLVLSPTRELSLQTLHNGFALNRFLDLRFAALVGGDSMEQQFELLASN 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR+L       L + ++  LV+DEADR+ ++G  P I  I   +P + Q  L
Sbjct: 143 PDVVVATPGRLLHIMEEASLHLTSVRCLVLDEADRLFELGLQPQIGAIMQKIPESCQRAL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCALLQQLLQ 240
           FSATM   L + +   L NP  I +++  + ++ ++     V    + +    LL++LL 
Sbjct: 203 FSATMPSVLAEFTSAGLHNPVVIRLDSEMTLSDQLKQSAFLVRNGEKVAALIVLLKRLLH 262

Query: 241 SQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             + + N    +IF   K +V  L   L   G S  A+HG +DQ +R   + +F +    
Sbjct: 263 VGEAIVNNAQALIFVESKFHVEYLQMILTTYGISASAVHGQMDQEARRLAVRSFAKRETT 322

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +MV +D+AARGLD+P + +V NF  P   + ++HR+GR  RAGR G A++L+  ED  +
Sbjct: 323 VMVVTDVAARGLDLPLLDNVVNFSFPFNPKLFVHRVGRVARAGRSGTAYSLMTFEDFPY 381


>gi|89100489|ref|ZP_01173351.1| hypothetical protein B14911_05646 [Bacillus sp. NRRL B-14911]
 gi|89084832|gb|EAR63971.1| hypothetical protein B14911_05646 [Bacillus sp. NRRL B-14911]
          Length = 436

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 134/383 (34%), Positives = 213/383 (55%), Gaps = 12/383 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L P ++ AV   G+ +PT IQ + IP++L+     G +QTGTGKT S++LP+L  
Sbjct: 6   FERYELKPFIIEAVKKLGFYEPTEIQERLIPIILKGDSAIGQSQTGTGKTHSYILPILQK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNF----EKYGKNYNLTVALLIGGIPFEAQNKK 118
           ++  R  V+    +I  PTRELA Q+        E+   +  ++  L IGG   +   +K
Sbjct: 66  IDPSRQGVQ---AVITAPTRELATQIHKEVLKVTEQADGDEEISSKLFIGGTDKQRTIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+    V++ TPGRI D      LL++   +LV+DEAD MLDMGF+  +  +   +P   
Sbjct: 123 LKVQPQVVVGTPGRINDLVKENALLVHTASMLVVDEADLMLDMGFLEDVDQVAGKMPEKL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+   + +L+NPK +++      A  IEH  + +  ++  K  ++ + 
Sbjct: 183 QMLVFSATIPEKLKPFLKKYLENPKFVQIEPKQIAAAKIEHYLLPS--KHKNKTEIVFRA 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L++ +     I+F N KK    +  +L ++G  V  IHG++  R R K++    +   Q 
Sbjct: 241 LEAFNPYL-AIVFTNTKKKADEVADALMQKGLKVGRIHGDLSPRERKKMMKQIMDLEFQY 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  + HV N+++P   + YIHR+GRT RAG  G A T+    D   ++
Sbjct: 300 IVATDLAARGIDIQGISHVINYELPTDLDFYIHRVGRTARAGSSGIALTIYDTSDEDALN 359

Query: 359 AIEKL-IE-KKVDWLNGDLSSLN 379
            +EKL IE K VD   G+   L 
Sbjct: 360 RLEKLGIEFKHVDLQKGEWIDLG 382


>gi|297625843|ref|YP_003687606.1| hypothetical protein PFREUD_06320 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921608|emb|CBL56162.1| Hypothetical protein PFREUD_06320 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 1043

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 123/349 (35%), Positives = 195/349 (55%), Gaps = 8/349 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F++LG+ P+ +   LD+ G + P PIQ   IP  L   DV G  QTG+GKT +F +P++T
Sbjct: 616 FSELGV-PQPIVEELDSQGILAPFPIQQAAIPDALSGRDVLGRGQTGSGKTLAFGIPVIT 674

Query: 62  ILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L   G    R PR L++ PTRELA QV D      K   L+  L+ GG+ +  Q + LE
Sbjct: 675 RLAASGTGHGRQPRALLMAPTRELAQQVNDVLFPLAKAMGLSTILVAGGMSYTPQLRALE 734

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+++ TPGR++D   RG   +  ++ +V+DEAD M DMGF+P +  I   +    Q 
Sbjct: 735 RGVDIVVATPGRLIDLIERGSAKLGEVQEVVLDEADEMADMGFMPDVTRILDEISREAQH 794

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++  +   ++ +P    V++  ++  T+ H      A+   K A+   + Q
Sbjct: 795 LLFSATLDRQVDTIVRRYMHDPVEHGVDSAKASVTTMRHELWTVNAR--DKAAI---IAQ 849

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +     ++F   +++       L   G    A+HG + Q  R ++L  F++G + ++V
Sbjct: 850 AANRPGRTLVFVRTQRDADRTAEQLRDLGLMAGALHGGLPQGMRARVLYAFRQGRVPVLV 909

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           A+D+AARG+D+ DV  V   D P+ +++Y+HR GRT RAG  G   TLV
Sbjct: 910 ATDVAARGIDVDDVSLVLQADPPHDSKDYLHRAGRTARAGEDGLVATLV 958


>gi|171693103|ref|XP_001911476.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946500|emb|CAP73301.1| unnamed protein product [Podospora anserina S mat+]
          Length = 488

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 121/379 (31%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + ML +
Sbjct: 116 FESMSLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQV 175

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 176 IDTA---VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYG 232

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 233 QHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVVV 292

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 293 VSATLPHDVLTMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTL- 351

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG++ Q+ R  I+ +F++G  +++
Sbjct: 352 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVL 407

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 408 ISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVRILRD 467

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 468 IELYYSTQIDEMPMNVADL 486


>gi|169769538|ref|XP_001819239.1| ATP-dependent RNA helicase dbp3 [Aspergillus oryzae RIB40]
 gi|91206543|sp|Q2UMH8|DBP3_ASPOR RecName: Full=ATP-dependent RNA helicase dbp3
 gi|83767097|dbj|BAE57237.1| unnamed protein product [Aspergillus oryzae]
          Length = 498

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 130/345 (37%), Positives = 194/345 (56%), Gaps = 11/345 (3%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG---RARVRMPRT 75
           + +  PT IQ  T PL+    DV GIA+TG+GKT +F LP L  ++     + +   P  
Sbjct: 98  SSFKSPTSIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKIQDSAMTKQKPYRPLA 157

Query: 76  LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           +I+ PTRELA Q+ D   K+  +  + VA + GG+  E Q + L + A V++ TPGR+ D
Sbjct: 158 VIISPTRELAMQIYDQLLKFSGSVGVRVACVFGGVRKEEQREAL-KTAGVVVATPGRLKD 216

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQTLLFSATMTDELQKV 194
             N G + +  ++ LV+DEADRMLD GF   I++I   +P + RQT++F+AT    ++ +
Sbjct: 217 LQNDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIIRPMPVSKRQTIMFTATWPPSVRDL 276

Query: 195 SENFLQNPKRIEVNTPSST---AETIEHCFVATYAQYSKKCALLQQLLQSQDTM---KNG 248
           +  F+ +P  + +    S    A T     V     + K+  L+Q L +SQ  +   +  
Sbjct: 277 ASTFMSSPVTVTIGGDPSADPRANTRIKQVVEVVKPHEKESRLVQLLNRSQRGVPEPEKV 336

Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           + FC  KK  + +   L  +GF V  IHG++ Q+ R + L  FK G   ++VA+D+AARG
Sbjct: 337 LAFCLYKKEAMRIERLLRTKGFKVAGIHGDLSQQERFRSLDAFKTGAATVLVATDVAARG 396

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           LDIP V  V N   P   E+Y+HRIGRTGRAG  G A TL  + D
Sbjct: 397 LDIPSVKQVINVTFPLTVEDYVHRIGRTGRAGAEGHAVTLFTETD 441


>gi|293332577|ref|NP_001169296.1| hypothetical protein LOC100383160 [Zea mays]
 gi|224028479|gb|ACN33315.1| unknown [Zea mays]
          Length = 508

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 126/336 (37%), Positives = 182/336 (54%), Gaps = 6/336 (1%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM----PR 74
           + + +P+PIQ    P +L   D  GIA TG+GKT +F +P L  + K           PR
Sbjct: 106 SAFARPSPIQAHAWPFLLDGRDFIGIAATGSGKTIAFGVPALMHIRKKVGGKAGKKAVPR 165

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTRELA Q+AD   + G    +    L GG   E Q   L+ G D++I TPGR+ 
Sbjct: 166 CLVLSPTRELAQQIADVLSEAGAPCGIKSVCLYGGTKKEPQISALKSGVDIVIGTPGRMK 225

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D    G   +N +  +V+DEADRMLD+GF P ++ I S     RQ ++FSAT    + K+
Sbjct: 226 DLIEMGVCCLNEVSFVVLDEADRMLDLGFEPEVRAILSQTSSVRQMVMFSATWPLAVHKL 285

Query: 195 SENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI-IFC 252
           ++ F+  NP ++ + +    A       V      ++   LL  L +      N + +F 
Sbjct: 286 AQEFMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRTRDSRLLALLDKYHQAQSNRVLVFV 345

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             KK    +   L+++G+   ++HG+  Q  R K LS FKEG   LM+A+D+A+RGLDIP
Sbjct: 346 LYKKEAARVETMLQRRGWKAVSVHGDKAQHDRTKALSLFKEGKCPLMIATDVASRGLDIP 405

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           DV  V N+  P   E+Y+HRIGRTGRAG+ G A T 
Sbjct: 406 DVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTF 441


>gi|312074866|ref|XP_003140162.1| ATP-dependent RNA helicase An3 [Loa loa]
 gi|307764673|gb|EFO23907.1| ATP-dependent RNA helicase An3 [Loa loa]
          Length = 603

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 143/393 (36%), Positives = 215/393 (54%), Gaps = 27/393 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +L L P +   +  +GY KPTP+Q  +IP +L   D+   AQTG+GKTA+F++P++  
Sbjct: 55  FDELQLHPLIQENIKKSGYTKPTPVQKYSIPSLLSCRDLMSCAQTGSGKTAAFLVPVINH 114

Query: 62  ILEKGRARVRMPRT------------LILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
           I+      +RMP+             LIL PTRELA Q      K+    N+  A+L GG
Sbjct: 115 IIRNESTTMRMPQVMSTSRRTVFPVVLILSPTRELAMQTHKEALKFAYRTNVISAVLYGG 174

Query: 110 IP-FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
              +  Q +KL  G  +LI TPGR+LD  ++  + +++   LV+DEADRMLDMGF P I+
Sbjct: 175 RENYRDQVQKLTLGCHLLIATPGRLLDVMSQNVVSLHDCRFLVLDEADRMLDMGFEPQIR 234

Query: 169 NITSLVPF----TRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVA 223
            I           R T +FSAT   E+Q ++++FL  N   + V    ST+E I    + 
Sbjct: 235 QIVECHSMPKKGQRVTAMFSATFPKEIQILAQDFLMANYVFLAVGRVGSTSENIVQKII- 293

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            + +   K  LL +LL         ++F   K+   +L   L++  ++V  IHG++ Q  
Sbjct: 294 -WVEEHDKKRLLMELLDIDVNRGLALVFVETKRGANDLAWYLQRNNYNVMPIHGDLKQYE 352

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDIP+V HV NFD+P   + Y+HRIGRTGRAG  G
Sbjct: 353 RERHLEMFRSGQTNILVATAVAARGLDIPNVKHVINFDLPTDIDEYVHRIGRTGRAGNIG 412

Query: 344 KAFTLVAKEDIKHI--DAIEKLIEKKV---DWL 371
            A +     + ++I  D ++ L+E      +WL
Sbjct: 413 LATSFFTDRN-RNISRDLMDLLVESNQEVPEWL 444


>gi|115762569|ref|XP_792708.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115945187|ref|XP_001182545.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 889

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 128/375 (34%), Positives = 211/375 (56%), Gaps = 8/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ K IP++++  DV G+A+TG+GKTA+F+LPML  
Sbjct: 75  FQSMGLSHAVFKGIMKKGYKIPTPIQRKCIPIIMEGQDVVGMARTGSGKTAAFLLPMLER 134

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++ R+     R LIL PTRELA Q     ++  +  +L   +++GG   + Q   L   
Sbjct: 135 LQR-RSAQSGARALILSPTRELALQTLKFTKELARYTDLRSEVILGGDRMDDQFAALHEN 193

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI T GR+L       L +  +E +V DEADR+ +MGF   +  I S +P  RQTLL
Sbjct: 194 PDILIATRGRLLHVLVEMDLKLMQVEYVVFDEADRLFEMGFAEQLNEILSRLPDNRQTLL 253

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  + ++  S  +E ++  F+  Y + + K A+L  LL  +
Sbjct: 254 FSATLPKSLVEFASAGLSEPVLVRLDVESKISEQLKSMFL--YTRSNDKTAVLLHLL--R 309

Query: 243 DTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           D ++     ++F   + +V  +   LE+ G S   I+  +DQ +R   ++ F      ++
Sbjct: 310 DVIQPNQLTVVFLATRHHVDYVRELLEQAGISNTYIYSALDQAARKINVAKFTHKKTHIL 369

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+AARG+DIP +  V NF  P + + ++HR+GR  RAGR G A+++VA +++ ++  
Sbjct: 370 LVTDIAARGIDIPMLDVVINFHFPGKPKLFVHRVGRVARAGRTGTAYSMVAPDELSYLID 429

Query: 360 IEKLIEKKVDWLNGD 374
           +   + K + +   D
Sbjct: 430 LHLFLGKDIAFFKND 444


>gi|315042594|ref|XP_003170673.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Arthroderma
           gypseum CBS 118893]
 gi|311344462|gb|EFR03665.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Arthroderma
           gypseum CBS 118893]
          Length = 1183

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 205/373 (54%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  + +  +   GY  PT IQ + +P ++   DV G+A+TG+GKT +F+LPM   
Sbjct: 552 WSQCGLGVQTLDVIRKLGYEGPTSIQSQAVPAIMSGRDVIGVAKTGSGKTIAFLLPMFRH 611

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R    M  P +LI+ PTRELA Q+      + K  NL      GG P + Q  +L+
Sbjct: 612 IRDQRPLENMEGPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELK 671

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   +   
Sbjct: 672 RGAEIIVCTPGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRPN 731

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT    ++ ++   L  P  I V   S  A  I    V      +K   LL+ 
Sbjct: 732 RQTVLFSATFPRNMEALARKTLSKPIEIIVGGRSVVAPEITQ-IVEVRNDDAKFVRLLEL 790

Query: 238 L--LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L  L S D  ++   ++F ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 791 LGNLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKA 850

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 851 GIFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 910

Query: 354 IKHIDAIEKLIEK 366
            ++   I K +++
Sbjct: 911 ERYSVDISKALKQ 923


>gi|253745237|gb|EET01285.1| ATP-dependent RNA helicase [Giardia intestinalis ATCC 50581]
          Length = 450

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 142/419 (33%), Positives = 226/419 (53%), Gaps = 29/419 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH--DVCGIAQTGTGKTASFVLP 58
           M F DLG+ P+++ A+   G+V+PT IQ + + ++      DV G+A+TG+GKT +F +P
Sbjct: 1   MLFRDLGVCPELLDALERIGWVEPTAIQKEMLTVISTNKICDVVGVAETGSGKTGAFAIP 60

Query: 59  MLT-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L  +LE+G   V+   T++L PTRELA Q    F   GK++ L   L+IGG+    Q K
Sbjct: 61  ALQDLLERGN-NVKGVHTVVLSPTRELAVQTFSVFRDLGKDFGLRTGLVIGGVDLMQQRK 119

Query: 118 KLERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            L +    LICTPGR+ DH    +   + +I  L+IDEAD+ML+      + ++    P 
Sbjct: 120 ILAQQPHALICTPGRLADHLASTEGFSLKSIRFLIIDEADKMLEQDMGRAVLDLAKACPQ 179

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRI------------EVNTPSSTA------ETIE 218
            R+T LFSAT    +Q +        + +            EV+  +ST       E + 
Sbjct: 180 RRRTFLFSATFPSAVQALQNECTDRSRLVHIRVGVLAKDAPEVDGSASTQLAVVDNELLS 239

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
           H  V     +++K   L  LL +  T +  I+F  +   V  L   L   GF V  +HG+
Sbjct: 240 HKMVVL--PHAEKQLGLVVLLNNHATCQI-IVFATKISTVTKLALMLTTLGFEVGVVHGS 296

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
           + Q  R++ L+ F++G  ++++ASD+A RG+DIP+V  V N+D+P  + +Y+HR GRT R
Sbjct: 297 MAQDKRLEELNRFRQGEHKILLASDVAGRGIDIPNVDLVINYDLPVASRDYVHRAGRTAR 356

Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN---GDLSSLNPPLEKIDIAQHNHAR 394
           AGR G A T+V + D+ +   IE ++  +++  N   G+ + L P +E+   A    AR
Sbjct: 357 AGRRGTALTIVTQYDVVNFKRIEAMLGIRMEPYNPDFGEAAGLRPQVEEAIRAAERTAR 415


>gi|326673881|ref|XP_003200020.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like, partial
           [Danio rerio]
          Length = 477

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 135/361 (37%), Positives = 201/361 (55%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G V PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 38  FREMKFPQAILKGLKKKGIVHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPIIMF 97

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNY------NLTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y K         +  AL IGG+ 
Sbjct: 98  CLEQEKRLPFCKREGPYGLIICPSRELARQTHGIIEYYCKLLEDEGAPQMRCALCIGGMS 157

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + ++ G  +++ TPGR++D  N+  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 158 VKEQMEVVKHGVHMMVATPGRLMDLLNKKMVSLDICRYLALDEADRMIDMGFEEDIRTIF 217

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  I +N   + A +++   V    +Y K+
Sbjct: 218 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--ITINVGRAGAASLD---VIQEVEYVKE 272

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 273 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 332

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FKEG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G+ G A T + 
Sbjct: 333 FKEGKKDVLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATTFIN 392

Query: 351 K 351
           K
Sbjct: 393 K 393


>gi|145342427|ref|XP_001416184.1| Ddx49-related DEAD box helicase superfamily II protein
           [Ostreococcus lucimarinus CCE9901]
 gi|144576409|gb|ABO94477.1| Ddx49-related DEAD box helicase superfamily II protein
           [Ostreococcus lucimarinus CCE9901]
          Length = 417

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 130/385 (33%), Positives = 212/385 (55%), Gaps = 14/385 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLS  ++  +   G+ +P+ +Q   IP +LQ  DV GIA TG+GKTA+F LP++ 
Sbjct: 3   SFDKLGLSGVLLRNIRQLGFTEPSSVQKSCIPPILQGRDVIGIANTGSGKTAAFALPVVH 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L      V     L L PTRELA Q+A+ F  +    +L   ++IGG     Q   L +
Sbjct: 63  VLSVDPHGVF---ALCLSPTRELAYQIAEQFAVFSVGMSLRCEVVIGGEDLLRQASSLSK 119

Query: 122 GADVLICTPGRILDHFNRGK---LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              +++ TPGR+L+HF            ++ L++DEADR+LD  F   ++ + + +P  R
Sbjct: 120 RPHIVVATPGRLLEHFMHSSDTIECFQRLKFLILDEADRLLDSSFEAELRYLLTNLPQKR 179

Query: 179 QTLLFSATMTDELQKV----SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           QTL+FSAT+T  +  +     +      ++ E+ TP+  A+   +CF+    + +    +
Sbjct: 180 QTLMFSATITPSVIALKPLLGQRAFYYEEKGELTTPTGCAQY--YCFMPEKVKDTYLVHV 237

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L++L+ S+ T    +IFC   +    + H L   G + C++H    QR R   L+ FK  
Sbjct: 238 LRELVSSKST--RAMIFCPTVQKCEMVSHMLHNLGIAACSLHAAKKQRDRHSTLNAFKST 295

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            ++++VA+D+AARGLD+PDV  V N+D+P+    YIHRIGRT R    G+A +LV + D+
Sbjct: 296 MVKILVATDVAARGLDLPDVELVVNYDIPSDPRQYIHRIGRTARFHATGQAISLVTQYDV 355

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLN 379
             I  IEK +  +++  +   + +N
Sbjct: 356 GKIKKIEKHLGHELEEFHVQEADVN 380


>gi|115491279|ref|XP_001210267.1| hypothetical protein ATEG_00181 [Aspergillus terreus NIH2624]
 gi|121743211|sp|Q0D1K3|PRP5_ASPTN RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|114197127|gb|EAU38827.1| hypothetical protein ATEG_00181 [Aspergillus terreus NIH2624]
          Length = 1181

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 130/359 (36%), Positives = 200/359 (55%), Gaps = 10/359 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  + +  +   GY  PT IQ + IP ++   DV G+A+TG+GKT +F++PM   
Sbjct: 551 WSQCGLGVQTLDVIDRLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTVAFLIPMFRH 610

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++  R    M  P  LI+ PTRELA Q+  + + + K  NL      GG P + Q  +L+
Sbjct: 611 IKDQRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELK 670

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I + V   
Sbjct: 671 RGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANVRPD 730

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT    ++ ++   L  P  I V   S  A  I    V    +  K   LL+ 
Sbjct: 731 RQTVLFSATFPRNMEALARKTLNKPVEIVVGGKSVVAPEITQ-IVEVRNEDKKFVRLLEL 789

Query: 238 L--LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L  L S D  ++   +IF  +++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 790 LGNLYSSDENEDARALIFVERQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKA 849

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++
Sbjct: 850 GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTED 908


>gi|50955710|ref|YP_062998.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50952192|gb|AAT89893.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 399

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 204/379 (53%), Gaps = 15/379 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   +V A+ + G   P PIQ  T P ++   DV G  +TG+GKT +F  PM+  
Sbjct: 6   FADLGLGGNIVRALAELGAETPFPIQAATAPEIVAGRDVLGRGRTGSGKTIAFGAPMVER 65

Query: 63  L-----EKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
           L     E G     R   R PR LIL PTRELA Q+    +   ++  L    + GG+P 
Sbjct: 66  LMRLWAESGKSGGKRQTGRAPRALILAPTRELALQIDRTVQPIARSVGLFTTQIYGGVPQ 125

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q   L+RG D++I TPGRI D   +G+L ++ + I V+DEAD M D+GF+  +Q I  
Sbjct: 126 GRQVGALQRGVDIVIGTPGRIEDLVEQGRLDLSQVVISVLDEADHMCDIGFLEPVQRILR 185

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                 Q LLFSAT+   + ++ + FL +P   EV      +  I+H  +    ++ +K 
Sbjct: 186 ETVDGGQKLLFSATLDSGVAQLVDEFLVDPSVHEVAGEDQDSSAIDHRVLVV--EHREKG 243

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           A+++QL    D     +IF   +     L  +LE  G    ++HG+++Q  R + L+   
Sbjct: 244 AIIEQL---ADRDGKTLIFARTRAFAEMLADNLEDAGIPAVSLHGDLNQSRRTRNLAQLT 300

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G + ++VA+D+AARG+ + D+  V   D P+  + Y+HR GRTGRAG+ G   TL+ ++
Sbjct: 301 SGRVSVLVATDVAARGIHVDDIDLVIQADAPDEYKTYLHRSGRTGRAGKRGTVVTLIPRQ 360

Query: 353 DIKHIDAIEKLIEKKVDWL 371
             + +  + +  E + D++
Sbjct: 361 RQRRMGELLQRAEIEADFV 379


>gi|19113180|ref|NP_596388.1| ATP-dependent RNA helicase Dbp3 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|1723271|sp|Q10202|DBP3_SCHPO RecName: Full=ATP-dependent RNA helicase dbp3
 gi|3451298|emb|CAA20430.1| ATP-dependent RNA helicase Dbp3 (predicted) [Schizosaccharomyces
           pombe]
          Length = 578

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 135/367 (36%), Positives = 203/367 (55%), Gaps = 17/367 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L +S K+   + +  Y +PTPIQ  T P +L   DV GIA+TG+GKT +F +P L
Sbjct: 167 LQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPAL 224

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L        +PR L++ PTRELA Q  +N     +  NL   ++ GG P +++  +  
Sbjct: 225 QYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAP-KSEQARAA 283

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP----- 175
           + A V+I TPGR+LD  N G +  + +  LV+DEADRMLD GF   I+NI S  P     
Sbjct: 284 KNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRN 343

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +RQT+ FSAT  + ++ ++  FL++P +I + +    A       V        K  +L
Sbjct: 344 GSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERML 403

Query: 236 QQLLQSQDTMKNG------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
             LL+    + +G      +IF   KK    +  +L ++ ++V  IHG++ Q +R++ L+
Sbjct: 404 DNLLRKH--LSSGGKDDKILIFVLYKKEAARVEGTLARK-YNVVGIHGDMSQGARLQALN 460

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK G   ++VA+D+AARGLDIP V  V N   P   E+Y+HRIGRTGRA   G A T  
Sbjct: 461 DFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFF 520

Query: 350 AKEDIKH 356
             +D  H
Sbjct: 521 TPQDKSH 527


>gi|322818915|gb|EFZ26192.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 794

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 132/361 (36%), Positives = 204/361 (56%), Gaps = 19/361 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DL + P +   V   GY +PTP+Q   IP+ L   D+   AQTG+GKTA+F++P++  
Sbjct: 341 FEDLYVEPALALNVAKCGYKQPTPVQRYGIPVCLNGDDLMACAQTGSGKTAAFLVPVVHY 400

Query: 62  ILEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           IL+ G    R RV  P  +I+ PTRELA Q+ D   K     ++   ++ GG P+  + +
Sbjct: 401 ILKHGVSPARERVSYPIAVIMAPTRELALQIYDEVRKLTFRTDIFYDVVYGGTPYPTRFE 460

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL---- 173
                 D+L+  PGR+ D F+RG +  + ++ LV+DEADRML+MGF   I+ + +     
Sbjct: 461 N-----DILVACPGRLKDIFDRGIVSFSRVKFLVLDEADRMLEMGFEEQIEYLVASRYTD 515

Query: 174 VPFT--RQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
           +P T  RQTL+FSAT    +  +++ +L Q+   + V    ST + I    V    Q S+
Sbjct: 516 MPQTTERQTLMFSATFPQRILNLAKRYLRQHYYLLTVGRVGSTTKNITQKIVRV--QESE 573

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K   L +++  Q      +IF   K+    L ++L+ +G     IHG+  Q  R + L +
Sbjct: 574 KMDKLFEVIYQQKQTDLVLIFVETKRAAEELHYALKSEGIPSATIHGDRRQFDRERALRD 633

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK+G   ++VA+D+A+RGLD+P+V HV  +D+P   ++Y HRIGRTGRAG  G A +   
Sbjct: 634 FKDGITPILVATDVASRGLDVPNVAHVIQYDLPKEMDDYTHRIGRTGRAGNKGTATSFYN 693

Query: 351 K 351
           K
Sbjct: 694 K 694


>gi|307188310|gb|EFN73102.1| Probable ATP-dependent RNA helicase DDX43 [Camponotus floridanus]
          Length = 677

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 121/363 (33%), Positives = 204/363 (56%), Gaps = 11/363 (3%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG--- 66
           P+++  +   G+ KP+PIQ +  P++L   D+ GIAQTGTGKT +F+LP L  ++     
Sbjct: 266 PEILREIQKQGFTKPSPIQCQAWPILLSGQDLIGIAQTGTGKTLAFLLPALIHIDGQITP 325

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R     P  L++ PTRELA Q+     KY     +    + GG   + Q   + +G  ++
Sbjct: 326 RDERPGPNVLVMAPTRELALQIEKEVGKYSYR-GIKAVCVYGGGNRKEQINIVTKGVQIV 384

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D    G L ++ +  L++DEADRMLDMGF P I+     V   RQT++ SAT
Sbjct: 385 IATPGRLNDLVQAGVLNVSAVTYLILDEADRMLDMGFEPQIRKTLLGVRPDRQTVMTSAT 444

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEH--CFVATYAQYSKKCALLQQLLQSQD 243
               ++++++++++NP ++ V +    A  T+    C +       +K  ++ Q  +   
Sbjct: 445 WPQGVRRLAQSYMKNPIQVCVGSLDLAAVHTVTQKICMINE----DEKLDMMHQFFREMG 500

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
           +    I+F  +K  V ++   L        +IHG+ +Q  R + L + K G +Q+++A+D
Sbjct: 501 SYDKVIVFFGKKAKVDDISSDLALSKIDCQSIHGDREQADREQALEDLKTGAVQILLATD 560

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +A+RG+DI D+ HV N+D P   E Y+HR+GRTGRAGR G++ T + ++D  H   +  +
Sbjct: 561 VASRGIDIEDITHVLNYDFPKDIEEYVHRVGRTGRAGRTGESITFMTRQDWHHAKELINI 620

Query: 364 IEK 366
           +E+
Sbjct: 621 LEE 623


>gi|156549811|ref|XP_001606554.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 456

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 140/371 (37%), Positives = 202/371 (54%), Gaps = 7/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DL +S  ++  +   G  KPTPIQ   IP +L   D  G A+TG+GKT +F LP+L 
Sbjct: 3   EFTDLNISSWIIDQLKLIGVKKPTPIQQNCIPAILSGKDCIGCAKTGSGKTLAFALPILQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    +     L+L PTRELA Q+ D F   GK  NL    ++GG+    Q ++L R
Sbjct: 63  KLSEDPYGIF---ALVLTPTRELAFQIGDQFAAIGKTINLKKCTIVGGMDMVVQGQELAR 119

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+ DH        +  I+ LV+DEADR+L   F   +  I   +P  RQ+
Sbjct: 120 HPHIVVATPGRLADHLESCNTFSLARIKFLVLDEADRLLGGHFDEQLSVIFKALPKNRQS 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+TD L KV +   +     E    S  A   E            + A L ++++
Sbjct: 180 LLFSATITDALDKVKQVSTKEWFIWESTDDSGVATVKELDQRYVLCPKDVRDAFLVEVIR 239

Query: 241 S-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + +   +NG  +IF +  KN   L  +L + GF   A+H  I Q+ R+  LS FK    +
Sbjct: 240 TFRADNENGSIMIFTDTCKNCQLLSMTLNEVGFDNVALHAMIKQKERLSALSKFKSNHTK 299

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARGLDIP V  V N ++PN  + YIHR+GRT RAGR G A +LV   DI  +
Sbjct: 300 ILIATDVAARGLDIPIVALVINHNIPNIPKEYIHRVGRTARAGRGGMAVSLVTPYDINLL 359

Query: 358 DAIEKLIEKKV 368
            AIE+ I  K+
Sbjct: 360 HAIEETIGTKL 370


>gi|315503770|ref|YP_004082657.1| dead/deah box helicase domain protein [Micromonospora sp. L5]
 gi|315410389|gb|ADU08506.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5]
          Length = 417

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 129/347 (37%), Positives = 182/347 (52%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  GL+P +V  +   G   P PIQ  TIP  L   DV G  +TG+GKT +F LP+L  
Sbjct: 8   FAATGLAPALVSELAAQGISAPFPIQAATIPDSLAGRDVLGRGRTGSGKTLAFGLPLLHR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RAR   P  L+L PTRELAAQV +    Y     L  A ++GG+    Q   L  G
Sbjct: 68  TAGRRARPGRPLALVLVPTRELAAQVTEALAPYAATLGLRCATVVGGLSLTRQAAALRAG 127

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+VL+ TPGR+ D  +RG   ++ + I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 128 AEVLVATPGRLHDLIDRGDARLDQVAITVLDEADQMADMGFLPQVTKLLEQVAPGGQRML 187

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++   FL +P    V+  ++T   + H  +   A+  K  AL     +  
Sbjct: 188 FSATLDRGVDRLVRRFLTDPVTHSVDPGTATVTAMTHHVLHLDAE-DKPAALAHIAAREG 246

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T    I+F   K     +   L  +G    A+HG   Q  R +IL  F+ G +  +VA+
Sbjct: 247 RT----IVFIATKHRADRVARQLLAKGVRAAALHGGKSQPQRTRILEQFRTGQVTALVAT 302

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+ +  +  V N D P  A++Y+HR GRT RAG  G   TLV
Sbjct: 303 DVAARGIHVDGLDLVVNADPPTEAKDYLHRGGRTARAGESGTVVTLV 349


>gi|327292871|ref|XP_003231133.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Trichophyton
           rubrum CBS 118892]
 gi|326466763|gb|EGD92216.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Trichophyton
           rubrum CBS 118892]
          Length = 1180

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 129/373 (34%), Positives = 206/373 (55%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  + +  +   GY +PT IQ + +P ++   DV G+A+TG+GKT +F+LPM   
Sbjct: 549 WSQCGLGVQTLDVIRKLGYERPTSIQSQAVPAIMSGRDVIGVAKTGSGKTIAFLLPMFRH 608

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R    M  P ++I+ PTRELA Q+      + K  NL      GG P + Q  +L+
Sbjct: 609 IRDQRPLENMEGPISVIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELK 668

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   +   
Sbjct: 669 RGAEIIVCTPGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRPN 728

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT    ++ ++   L  P  I V   S  A  I    V      +K   LL+ 
Sbjct: 729 RQTVLFSATFPRNMEALARKTLSKPIEIIVGGRSVVAPEITQ-IVEVRNDDAKFVRLLEL 787

Query: 238 L--LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L  L S D  ++   ++F ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 788 LGNLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKA 847

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 848 GIFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 907

Query: 354 IKHIDAIEKLIEK 366
            ++   I K +++
Sbjct: 908 ERYSVDISKALKQ 920


>gi|289424994|ref|ZP_06426773.1| DEAD/DEAH box helicase [Propionibacterium acnes SK187]
 gi|289427671|ref|ZP_06429383.1| DEAD/DEAH box helicase [Propionibacterium acnes J165]
 gi|289154693|gb|EFD03379.1| DEAD/DEAH box helicase [Propionibacterium acnes SK187]
 gi|289159162|gb|EFD07354.1| DEAD/DEAH box helicase [Propionibacterium acnes J165]
 gi|332676187|gb|AEE73003.1| DEAD-box ATP-dependent RNA helicase 3 [Propionibacterium acnes 266]
          Length = 700

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 190/347 (54%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LG+  ++V A+   G   P  IQI  IP  +   DV G A TG+GKT +F +P+L+ 
Sbjct: 231 FSALGVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSR 290

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L         PR LIL PTRELA Q+AD       +  L+  L+ GG+ +  Q K  +RG
Sbjct: 291 LSATPREDNRPRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFKRG 350

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR++D    G   ++ + + V+DEAD M ++GF+  + +I   +P   Q LL
Sbjct: 351 VDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRLL 410

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + K+   ++  P   EV+    +  T+ H   A   +  +K  L+ ++    
Sbjct: 411 FSATLDGAVNKLVRRYMHEPVIHEVDPDKGSVATMTHH--AFQIKPHEKVGLMCEIANRS 468

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
               + I+F   ++    +   L + G    A+HG + Q +R ++L+ FK+G++ ++VA+
Sbjct: 469 ---GHTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVAT 525

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+ DV  V   D P   ++Y+HR GRT RAG  G   +LV
Sbjct: 526 DVAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLV 572


>gi|330887731|gb|EGH20392.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. mori str.
           301020]
          Length = 427

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 121/334 (36%), Positives = 197/334 (58%), Gaps = 10/334 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 97  FHDFSLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 156

Query: 63  LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L +        +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 157 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 216

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
           LE R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 217 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 276

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T+++  +++ +  +P  +E+ + +  ++ +E    A     + K  LL
Sbjct: 277 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 334

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 335 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 393

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329
           I+++VA+D+A RG+ I  + HV NF +P   ++Y
Sbjct: 394 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDY 427


>gi|169853351|ref|XP_001833356.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Coprinopsis
           cinerea okayama7#130]
 gi|116505566|gb|EAU88461.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Coprinopsis
           cinerea okayama7#130]
          Length = 748

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 139/416 (33%), Positives = 211/416 (50%), Gaps = 37/416 (8%)

Query: 10  PKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK--- 65
           P+V+   ++  GY +P+PIQ + IP+ LQ  DV GIA+TG+GKTA+FV+PML  +     
Sbjct: 329 PQVILDCIERIGYKEPSPIQRQAIPIGLQNRDVIGIAETGSGKTAAFVIPMLAFILTLPI 388

Query: 66  --GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
                R   P  LIL PTRELA Q+    +K+          ++GG   E Q   L  GA
Sbjct: 389 FTDDNRHLGPYALILAPTRELAQQIESETKKFATPLGYKCVSIVGGRAVEEQQFNLREGA 448

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF------- 176
           +++I TPGR+ D   R  L+++    +V+DEADRM+++GF   +  I   +P        
Sbjct: 449 EIIIATPGRLKDVLERHVLVLSQCRYIVMDEADRMVNLGFEADLTFILDQLPTDTMEGEE 508

Query: 177 -----------------TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
                            TR T LFSATM   +++++  +L+ P  I +       +T+E 
Sbjct: 509 QGEKMDVDGETMVKKGRTRVTTLFSATMPPAVERLARKYLKKPATITIGEAGRAVDTVEQ 568

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                     KK  +L  +L S       I+F NQKK    +   L + G+S   +H   
Sbjct: 569 KVEFVNGDEKKKQRMLD-ILNSGLYAPPIIVFVNQKKTADMVAKDLSRAGWSTSTLHSGK 627

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
           +Q  R   L   + G   ++VA+DLA RG+D+ DV  V N+ + N  E Y+HRIGRTGRA
Sbjct: 628 NQEQREAALQALRTGDADILVATDLAGRGIDVQDVTLVINYQMANTIEAYVHRIGRTGRA 687

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           G+ G A T +  +D + +  +++ I K        +S + P L K + AQH  +R+
Sbjct: 688 GKLGTAITFLTNDDDEVMYDLKQEISKS------PVSKVPPELAKHEAAQHKVSRE 737


>gi|294658482|ref|XP_460822.2| DEHA2F10538p [Debaryomyces hansenii CBS767]
 gi|218511820|sp|Q6BLU9|PRP28_DEBHA RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|202953164|emb|CAG89165.2| DEHA2F10538p [Debaryomyces hansenii]
          Length = 580

 Score =  226 bits (575), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 132/390 (33%), Positives = 213/390 (54%), Gaps = 39/390 (10%)

Query: 3   FADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +A+  L  K++  ++ + GY  PTPIQ  +IPL L   D+ GIA+TG+GKT +F+LP+ +
Sbjct: 156 WAESKLPAKLLNILIKNLGYDSPTPIQRASIPLALNGRDIVGIAETGSGKTLAFLLPLFS 215

Query: 62  IL-----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
            +            +  +    P  LIL PTRELA Q+    + +G   NL V  +IGG 
Sbjct: 216 YILSVDSNYLLYEHQQESNFNKPLGLILAPTRELALQITKEAKLFGDKLNLNVVTIIGGH 275

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
            +E     +  G  +++ TPGR++D   RG + ++N     +DEAD+M+DMGF   +Q+I
Sbjct: 276 QYEETVHSVRNGVHIVVATPGRLIDSLERGIINLSNCYFFTMDEADKMIDMGFEKSLQSI 335

Query: 171 TSLVPFT----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA 214
            + +P +                R TL+F+AT++  ++K+++N+L  P  + +       
Sbjct: 336 LNYLPASEKLETTIDGKIFNIKKRITLMFTATISPPIEKITKNYLMKPGYLFIGNVGEAV 395

Query: 215 ETIEHCFVATYAQYS-------KKCALLQQLLQ-SQDTMKNG--IIFCNQKKNVVNLCHS 264
           + I   F    A+ S       KK   L  +L+  +D  +N   IIF N KK    L + 
Sbjct: 396 DNINQQFEYFGARQSSDEILDPKKLDKLFSILRFHKDENRNYSIIIFANFKKACEELAYE 455

Query: 265 LEKQGFS-VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
           L ++GFS    IHG+  Q +R + + +F+EG  ++++A+D+AARG+DIP+V  V N+ + 
Sbjct: 456 LSRKGFSDNTVIHGSKSQEARERAIDSFREGKDKILIATDVAARGIDIPNVSLVVNYQMT 515

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            + + YIHRIGRTGRAG  G + T +   D
Sbjct: 516 KKFDEYIHRIGRTGRAGNKGTSCTFIDDGD 545


>gi|46122961|ref|XP_386034.1| hypothetical protein FG05858.1 [Gibberella zeae PH-1]
 gi|91206664|sp|Q4IAA0|FAL1_GIBZE RecName: Full=ATP-dependent RNA helicase FAL1
          Length = 401

 Score =  226 bits (575), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   GY  P+ +Q + I  V +  D    AQ+GTGKTA+F + ML +
Sbjct: 29  FESMSLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQV 88

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 89  IDTA---VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYG 145

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 146 QHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPATQVVV 205

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 206 VSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTL- 264

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG++ Q+ R  I+ +F++G  +++
Sbjct: 265 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVL 320

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 321 ISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVRILRD 380

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 381 IELYYSTQIDEMPMNVADL 399


>gi|242765545|ref|XP_002340996.1| ATP-dependent RNA helicase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218724192|gb|EED23609.1| ATP-dependent RNA helicase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 497

 Score =  226 bits (575), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 130/348 (37%), Positives = 197/348 (56%), Gaps = 9/348 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR--MPRTLIL 78
           +  PT +Q  T PL+    DV GIA+TG+GKT +F LP L  +     +++   PR +IL
Sbjct: 101 FSAPTSVQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKNMVDSEKKLKPSHPRAVIL 160

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA Q+ +  E Y    ++ V  + GG+  + Q + L+  A +++ TPGR+ D  +
Sbjct: 161 TPTRELAMQIYEQLEGYALRVSVKVTCIFGGVRKDEQREALKNTA-IVVATPGRLKDLES 219

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR-QTLLFSATMTDELQKVSEN 197
            G + ++ ++ LV+DEADRMLD GF   I++I S +P +R QT +F+AT    ++ ++ +
Sbjct: 220 EGAINLSKVKYLVLDEADRMLDKGFEQDIKDIVSPMPVSRRQTAMFTATWPVAVRNLANS 279

Query: 198 FLQNPKRIEVNTPSST---AETIEHCFVATYAQYSKKCALLQQL--LQSQDTMKNGIIFC 252
           F Q+P  + V    S    A T     V       K+  L Q L  L  +      ++FC
Sbjct: 280 FTQDPVMVTVGGKPSEDPRANTRIKQVVEVLDPRDKENRLTQILGKLTRESPQGKILVFC 339

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             KK  + +   ++ +G++V  IHG++ Q  R K L+ FK G + ++VA+D+AARGLDIP
Sbjct: 340 LYKKEAMRIERLIQSRGYAVAGIHGDLSQSDRFKSLAAFKSGDVTILVATDVAARGLDIP 399

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            V  V N   P   E+Y+HRIGRTGRAG  G A TL  + D  H  A+
Sbjct: 400 AVKTVVNVTFPLTIEDYVHRIGRTGRAGADGHAITLFTETDKAHSGAL 447


>gi|297584627|ref|YP_003700407.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           selenitireducens MLS10]
 gi|297143084|gb|ADH99841.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
           MLS10]
          Length = 432

 Score =  226 bits (575), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 129/362 (35%), Positives = 201/362 (55%), Gaps = 8/362 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    L+  ++ A+ D G   PT IQ + IP V +  DV G +QTGTGKT +F+LP+LT
Sbjct: 4   NFERFRLADYLIEALKDEGIDLPTEIQERIIPAVNKGEDVIGRSQTGTGKTLAFLLPLLT 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA--LLIGGIPFEAQNKKL 119
            L+  +   ++   +I  PTRELA+Q+ D  ++Y      TV   L++GG   +   +K 
Sbjct: 64  RLDPEKKETQI---VITAPTRELASQLYDVCKRYASFSETTVTSQLIVGGTDRKRMLEKA 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   ++I TPGRILD      L    +   V+DEAD+MLDMGF+  +  I S++    Q
Sbjct: 121 KQRPHIVIGTPGRILDMMKEAALNPMTVSSFVVDEADQMLDMGFLEEVDRIASMMNENLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+ + L+   + ++ +PK +EV    S    I H  +    +  K+  +L  + 
Sbjct: 181 LLVFSATIPESLKPFLKKYMNHPKEVEVQPKQSAPSEISHWLIPDRDRDRKE--ILVTIA 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +     IIF N K++   +   +  +GF+V  IHG+I  R R K+L   +   IQ +
Sbjct: 239 KDLNPFL-AIIFTNTKESADEVFKRMLAEGFNVDCIHGDIQPRQRKKVLKKLQTAEIQYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DL ARG+D+  V H+ NF++P   E Y+HR+GRT RAG  G A T   + D   I+ 
Sbjct: 298 VATDLVARGIDVKGVSHIINFEIPKELEYYVHRVGRTARAGWDGTAITFFGRSDQPSIEK 357

Query: 360 IE 361
           +E
Sbjct: 358 LE 359


>gi|118366889|ref|XP_001016660.1| P68-like protein, putative [Tetrahymena thermophila]
 gi|89298427|gb|EAR96415.1| P68-like protein, putative [Tetrahymena thermophila SB210]
          Length = 699

 Score =  226 bits (575), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 132/377 (35%), Positives = 208/377 (55%), Gaps = 36/377 (9%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTI-------------------PLVLQRHDVCGIAQTGT 49
           PK + +V+ D+ + +P PIQ + +                   P+VL  HD+ GIAQTG+
Sbjct: 202 PKYIMSVIEDSKFSEPMPIQAQYVTNKKQKKKYKMYECSFIPFPIVLSGHDLIGIAQTGS 261

Query: 50  GKTASFVLPMLTILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
           GKT SF+LP L  +   +  V+    P  L+L PTRELA Q+ +   K+G    ++   +
Sbjct: 262 GKTLSFMLPALVHIN-AQDPVKPGEGPIALVLAPTRELANQIQEQCFKFGSKCKISSVCV 320

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG P   Q K+L  G D++I TPGR++D      + +  +  LV+DEADRMLDMGF P 
Sbjct: 321 YGGAPKIYQEKELRNGCDIVIATPGRLIDFLESNVIDLKRVTYLVLDEADRMLDMGFEPS 380

Query: 167 IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ-NPKRIEV-----NTPSSTAETIEHC 220
           I+ I   +   RQTL+FSAT    +++++ +F   +P  I++     N  +   + +E  
Sbjct: 381 IRKIVGQIRPDRQTLMFSATWPQTVRRLALDFCHGDPIHIQIGDMENNVNNDIDQQVE-- 438

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
            +    +Y +   +L  + +S  T    IIF   KK+  +L  +L+        IHG+  
Sbjct: 439 IIDKSQKYDRVKEILSTMTRSDKT----IIFTQTKKDCDDLSKALQTDNIRNICIHGDKS 494

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           QR R K++  FK G +  ++A+D+A+RGLD+ D+  V N+D P + E+Y+HR+GRTGRAG
Sbjct: 495 QRDRDKVMDLFKTGRVNTLIATDVASRGLDVKDIKLVINYDFPKQIEDYVHRVGRTGRAG 554

Query: 341 RHGKAFTLVAKEDIKHI 357
             GKA + + + + K I
Sbjct: 555 AQGKAISFLDQYEDKKI 571


>gi|168056517|ref|XP_001780266.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668320|gb|EDQ54930.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 397

 Score =  226 bits (575), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 202/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G+   ++  +   G+ KP+ IQ + +  ++   D    AQ+GTGKT+   L +  +
Sbjct: 26  FDQMGIREDLLRGIYAYGFEKPSAIQQRAVMPIISGRDAIAQAQSGTGKTSMIALAVCQM 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++      R  + LIL PTRELAAQ        G   N+     IGG       +KLE G
Sbjct: 86  IDTA---TREVQALILSPTRELAAQTEKVILAIGDFMNVQAHACIGGKSIGEDIRKLEYG 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++L++DE+D ML  GF   I ++   +P   Q +L
Sbjct: 143 VHVVSGTPGRVYDMIKRRTLRTRSIKLLILDESDEMLSRGFKDQIYDVYRYLPPELQVVL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 203 VSATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 261

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   +    F+V A+HG++ Q+ R  I++ F+ GT +++
Sbjct: 262 ----TITQAVIFCNTKRKVDWLTEKMRSNNFTVSAMHGDMPQKERDAIMAEFRSGTTRVL 317

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 318 ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRSDDIRILRD 377

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 378 IEQYYSTQIDEMPMNVADL 396


>gi|85857908|ref|YP_460110.1| superfamily II DNA/RNA helicase [Syntrophus aciditrophicus SB]
 gi|85720999|gb|ABC75942.1| superfamily II DNA and RNA helicases [Syntrophus aciditrophicus SB]
          Length = 525

 Score =  226 bits (575), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 120/343 (34%), Positives = 193/343 (56%), Gaps = 6/343 (1%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P +  A   AG+ K   +Q K IP +L R D+   ++TG+GKT +++LP+L  L+  +
Sbjct: 45  LPPTIRDAATRAGWTKLMDVQAKAIPYILARRDLMIQSKTGSGKTGAYLLPILGRLDPRK 104

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
           A  +    +IL PTRELA QV+        +  +  A+  GG+ + AQ +    GA ++I
Sbjct: 105 AACQ---AMILVPTRELALQVSREALLLSADSGIRTAVAYGGVGYHAQLEAFREGAQLVI 161

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGRILDH  R  L +  + ILV DEADRML MGF P ++ I   +P      L SAT 
Sbjct: 162 GTPGRILDHLIRSSLSLKALSILVFDEADRMLSMGFYPDMKRIQEFIPREINAYLLSATF 221

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
              + +++  FL+ P+ + ++         EH +        ++   L +++++++ + +
Sbjct: 222 PSHVLRLAGEFLRKPELLSLSRDQIHVTETEHVYYLVPGMGKERS--LVRIIEAENPV-S 278

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            IIFCN K  V  +   L++ G+    +   + Q++R K+++  + G ++ +VA+D+AAR
Sbjct: 279 AIIFCNTKATVHFVSVVLKRFGYDADELSSELSQKAREKVMARIRSGLLRFLVATDVAAR 338

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           G+DIPD+ HV  ++ P   E YIHR GRTGR G  G A +LVA
Sbjct: 339 GIDIPDLSHVIQYEPPEDPEAYIHRAGRTGRKGASGVAISLVA 381


>gi|322698074|gb|EFY89847.1| eukaryotic initiation factor 4A-12 [Metarhizium acridum CQMa 102]
          Length = 402

 Score =  226 bits (575), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   GY  P+ +Q + I  V +  D    AQ+GTGKTA+F + ML +
Sbjct: 30  FESMSLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQV 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 90  IDTA---VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYG 146

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 147 QHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPATQVVV 206

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 207 VSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTL- 265

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG++ Q+ R  I+ +F++G  +++
Sbjct: 266 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 322 ISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVRILRD 381

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 382 IELYYSTQIDEMPMNVADL 400


>gi|159114905|ref|XP_001707676.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
 gi|157435783|gb|EDO80002.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
          Length = 625

 Score =  226 bits (575), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 159/482 (32%), Positives = 236/482 (48%), Gaps = 54/482 (11%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M +  L LS ++  AVL  G+  PT +Q K IP+VL   D    A TG+GKT +F +P+L
Sbjct: 1   MSWQGLSLSRQLTRAVLRLGWKFPTTVQEKVIPIVLAGRDALVSAVTGSGKTGAFGIPLL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++ +GR        LIL PTRELAAQ A   ++     N  V LLIGG     Q  +L
Sbjct: 61  ERMILRGRDTYGTT-ALILSPTRELAAQTAAVLQELAYFTNFRVYLLIGGTDTAKQAAQL 119

Query: 120 ERGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
               D+++ TPGR++D   N     ++ IE+LV+DE D+MLD+GF   ++ I +L P  R
Sbjct: 120 RTEPDIIVATPGRLIDLVRNTVNFSLDTIEVLVLDEGDKMLDIGFHDELKEICALCPVAR 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC------ 232
           QTLLFSATM  E+   S   LQ P +++++ P + A+TI   FV       +KC      
Sbjct: 180 QTLLFSATMEKEVLSFSLLALQKPLQVQIDPPRTVAQTITQEFVMITPTLLRKCTEKFKG 239

Query: 233 --------------------ALLQQLLQSQDTMKNGIIFCNQKKNVVNL----------- 261
                               +LL+    S+D     ++FCN K+ V  +           
Sbjct: 240 EDSSLKSSTLSAIARDILLVSLLRNNFSSEDGQHKIMVFCNSKREVRRVFILLDMLSKPP 299

Query: 262 ---CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
                S    G     +HG+  Q+ R   L  F+ G I L+V SD+A+RGLDI +V  V 
Sbjct: 300 EDAARSCLLAGIRPSCLHGDSSQKERATELDRFRSGDINLLVCSDVASRGLDIENVTVVI 359

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            +D P   + +IHR+GRTGRA   G + T V      H +A E+ + K++     + +  
Sbjct: 360 QYDFPLSLDVHIHRVGRTGRADAPGTSITFV------HDNAQEQNVLKEIQDSQKERAKG 413

Query: 379 NPPLE-KID---IAQHNHARKNNPIPQK-STGFDRRKKNYSSQKSHIPLKESEKISKLQQ 433
            P  + KID   I    H   +N +P K     DR     + +   I +K++E I + + 
Sbjct: 414 QPLRQRKIDSKLITTITHYFVHNSVPDKLKRRVDRMNLEMAVKMEEIKIKKAENIMEFKD 473

Query: 434 DI 435
           +I
Sbjct: 474 EI 475


>gi|322712791|gb|EFZ04364.1| eukaryotic initiation factor 4A-12 [Metarhizium anisopliae ARSEF
           23]
          Length = 402

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   GY  P+ +Q + I  V +  D    AQ+GTGKTA+F + ML +
Sbjct: 30  FESMSLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQV 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 90  IDTA---VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYG 146

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 147 QHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPATQVVV 206

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 207 VSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTL- 265

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG++ Q+ R  I+ +F++G  +++
Sbjct: 266 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 322 ISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVRILRD 381

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 382 IELYYSTQIDEMPMNVADL 400


>gi|307203141|gb|EFN82321.1| ATP-dependent RNA helicase p62 [Harpegnathos saltator]
          Length = 410

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 126/359 (35%), Positives = 200/359 (55%), Gaps = 16/359 (4%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-----PR 74
           G+ +PT IQ +  P+ +  +++ GI QTG+GKT  ++LP +  +    A+ R+     P 
Sbjct: 9   GFQEPTAIQAQGWPIAMSGYNMVGIGQTGSGKTLGYILPAIVHIN---AQERLNHGDGPI 65

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            LIL PTRELA Q+      +G    +    + GG P   Q + L RG ++ I TPGR++
Sbjct: 66  ALILAPTRELAQQIQSVTTDFGSLSYVRSTCIFGGAPRGGQARDLRRGVEICIATPGRLI 125

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQ L++SAT   E++ +
Sbjct: 126 DFLEQGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPKEVRTL 185

Query: 195 SENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
           ++ +L+N  ++ + + +  A     + +E C    Y + +K   LL+ +  + +     I
Sbjct: 186 AKEYLKNYVQLNIGSLTLAANHDILQIVEVC--EEYEKEAKLKTLLENIHDANEDSSKII 243

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           IF   KK V ++  S+ + G+    IHG+  Q  R  +L  F+     ++VA+D+AARGL
Sbjct: 244 IFVETKKKVESITRSIRRFGWPAVCIHGDKSQHERDFVLREFRNKKSSILVATDVAARGL 303

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI-DAIEKLIEKK 367
           D+ DV +V NFD P+ +E+YIHRIGRTGR+G  G ++ L   ++ +   D I  L E K
Sbjct: 304 DVDDVKYVINFDYPSSSEDYIHRIGRTGRSGNTGTSYALFTPQNARQARDLINVLKEAK 362


>gi|242791510|ref|XP_002481772.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218718360|gb|EED17780.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 387

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 123/379 (32%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L +
Sbjct: 15  FEDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQV 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KLE G
Sbjct: 75  ID---TVVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEYG 131

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 132 QHVVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVV 191

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 192 VSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTL- 250

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++
Sbjct: 251 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  +D++ +  
Sbjct: 307 ISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRD 366

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 367 IELYYSTQIDEMPMNVADL 385


>gi|10039331|dbj|BAB13308.1| vasa-related protein CnVAS2 [Hydra vulgaris]
          Length = 890

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 136/389 (34%), Positives = 209/389 (53%), Gaps = 26/389 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++  L P  +  +  A Y +PTPIQ   IP +L + DV   AQTG+GKTASF+LP++T 
Sbjct: 452 FSEANLHPVCLKNLDLAKYKEPTPIQKYAIPAILAKRDVMACAQTGSGKTASFLLPIITN 511

Query: 62  ILEKGRAR-------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           ++ +G          V +P   IL PTREL  Q+     K+  N +L   +L GG+    
Sbjct: 512 LMNEGLDNIDSNIDGVALPLAAILAPTRELVVQLFTEARKFSYNSSLKPVVLYGGVAVAH 571

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  +L  G  +L+ TPGR+ D   RGK+   N++ L++DEAD+M+DMGF P I++I    
Sbjct: 572 QADRLRMGCHLLVATPGRLEDFIKRGKVNFQNLKYLILDEADKMIDMGFGPQIEHIIEFS 631

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  R TL+FSAT  D++Q ++  FL +   + V     T   +    +      +K
Sbjct: 632 GMPPKGIRNTLMFSATFPDQIQHLAAQFLNDYLFLTVGRVGGTCTDVTQSVIQVSG--TK 689

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K   L+ LLQ+  T +  ++F  +K++   L + L ++ F    +  +  +  R   L +
Sbjct: 690 KRETLENLLQTSGTDQT-LVFVEKKRDADFLANFLSQKNFPPTILFADRTREKRESALRD 748

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL-- 348
           F+ G   ++VA+ +AARGLDI DV HV N+D+P  A  Y+HRIGRTGR G  GKA +   
Sbjct: 749 FRNGIAPILVATAVAARGLDINDVKHVINYDLPKDANEYVHRIGRTGRIGNKGKATSFFD 808

Query: 349 ------VAKEDIKHIDAIEKLIEKKVDWL 371
                 +A+  +K +   E+ +    DWL
Sbjct: 809 LDRDGSLARSLVKLLSDAEQDVP---DWL 834


>gi|71662019|ref|XP_818022.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70883249|gb|EAN96171.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 792

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 132/361 (36%), Positives = 204/361 (56%), Gaps = 19/361 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DL + P +   V   GY +PTP+Q   IP+ L   D+   AQTG+GKTA+F++P++  
Sbjct: 340 FEDLYVEPALALNVAKCGYKQPTPVQRYGIPVCLNGDDLMACAQTGSGKTAAFLVPVVHY 399

Query: 62  ILEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           IL+ G    R RV  P  +I+ PTRELA Q+ D   K     ++   ++ GG P+  + +
Sbjct: 400 ILKHGVSPARERVSYPIAVIMAPTRELALQIYDEVRKLTFRTDIFYDVVYGGTPYPTRFE 459

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL---- 173
                 D+L+  PGR+ D F+RG +  + ++ LV+DEADRML+MGF   I+ + +     
Sbjct: 460 N-----DILVACPGRLKDIFDRGIVSFSRVKFLVLDEADRMLEMGFEEQIEYLVASRYTD 514

Query: 174 VPFT--RQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
           +P T  RQTL+FSAT    +  +++ +L Q+   + V    ST + I    V    Q S+
Sbjct: 515 MPQTTERQTLMFSATFPQRILNLAKRYLRQHYYLLTVGRVGSTTKNITQKIVRV--QESE 572

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K   L +++  Q      +IF   K+    L ++L+ +G     IHG+  Q  R + L +
Sbjct: 573 KMDKLFEVIYQQKQTDLVLIFVETKRAAEELHYALKSEGIPSATIHGDRRQFDRERALRD 632

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK+G   ++VA+D+A+RGLD+P+V HV  +D+P   ++Y HRIGRTGRAG  G A +   
Sbjct: 633 FKDGITPILVATDVASRGLDVPNVAHVIQYDLPKEMDDYTHRIGRTGRAGNKGTATSFYN 692

Query: 351 K 351
           K
Sbjct: 693 K 693


>gi|325918819|ref|ZP_08180902.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
 gi|325534965|gb|EGD06878.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
          Length = 429

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 130/371 (35%), Positives = 204/371 (54%), Gaps = 14/371 (3%)

Query: 1   MDFADLGLSPKVV----CAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFV 56
           M F  L LSP++      A+  AG+  PTPIQ + IP +L   D+  +AQTG+GKT ++ 
Sbjct: 1   MSFTHLSLSPQLQPFFDTALSKAGHRTPTPIQQQAIPPMLAGRDLIAMAQTGSGKTLAYA 60

Query: 57  LPMLTILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIP 111
           LP+L   ++  A    PR L   +L PTRELA QV +   +   +    L   + IGG  
Sbjct: 61  LPLLQ--QRMLAPETAPRVLGAVVLVPTRELAVQVDETLRQLAAHLPRRLKTVVAIGGSS 118

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q   L  GAD+++ TPGR+LD  +   L +  +  LV+DEADR+L++GF   +  I 
Sbjct: 119 INPQLLALRGGADIVVATPGRLLDLVDHNALRLGEVATLVLDEADRLLELGFGAELDRIL 178

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +L+P  RQ++LFSAT    +  +++  L++P RI ++     A  IE   +A  A   ++
Sbjct: 179 ALLPTQRQSVLFSATYPPAIAALAKRRLRDPLRITIDATPEQAPAIEQRALAVDA--GQR 236

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL+ LL ++    + ++F   +     +   L K G +   +HG + Q  R + L +F
Sbjct: 237 TQLLRHLL-TEHGWSHVLVFVASRHTADKVAEKLGKAGINAQPLHGELSQGRRARTLQSF 295

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K+  +Q++VA+DLA RG+DI  +  V N+D+P    +Y HRIGRT RAG  G A + +  
Sbjct: 296 KQHEVQVLVATDLAGRGIDIDALPAVINYDLPRSTVDYTHRIGRTARAGASGVAISFITA 355

Query: 352 EDIKHIDAIEK 362
           ++ +    IEK
Sbjct: 356 DNAQQWRLIEK 366


>gi|159467789|ref|XP_001692074.1| hypothetical protein CHLREDRAFT_128577 [Chlamydomonas reinhardtii]
 gi|158278801|gb|EDP04564.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 488

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 140/367 (38%), Positives = 206/367 (56%), Gaps = 9/367 (2%)

Query: 2   DFADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           DF  LGLS + +C V  + G  +PT +Q   IP +L+  DV G+AQTG+GKTA+F LP+L
Sbjct: 106 DFKGLGLS-EWLCGVCKSLGMSQPTDVQRGCIPAILKGRDVIGLAQTGSGKTAAFALPIL 164

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K    V     L+L PTRELA Q+++ F   G    L   ++IGG+  + Q ++L 
Sbjct: 165 QALAKDPYGVF---ALVLTPTRELAVQISEQFRALGAGMRLKELVVIGGVDMQQQARELA 221

Query: 121 RGADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   V++ TPGR+ D    G    M     LV+DEADR+LD  F   ++ I   +P  RQ
Sbjct: 222 KRPHVVVATPGRLADWVMSGLAAGMARCRFLVLDEADRVLDSTFEDDLRRILKALPAARQ 281

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQ 237
           TLLFSATMT  L  +    L +    +      TA+ +  E+ F+    +      LL  
Sbjct: 282 TLLFSATMTKSLIALQRQSLADAHVFQAYEGLRTADKLKEEYLFLPAKVKEVYLHHLLTV 341

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L ++  +++ IIF    +    L   LE+ G    A+H    Q+ R+  L+ FK   + 
Sbjct: 342 VLPARK-VRSAIIFAGTCRGCHLLSLLLEELGLPAVALHSGKSQKGRLAALARFKSEQVP 400

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L++A+D+A+RGLDIP V  V NFD+P  A +Y+HR+GRT RAGR G + +LV + D+  +
Sbjct: 401 LLLATDVASRGLDIPSVDAVINFDLPMLARDYVHRVGRTARAGRSGWSVSLVTQYDVGLV 460

Query: 358 DAIEKLI 364
            AIE+LI
Sbjct: 461 GAIEELI 467


>gi|326482407|gb|EGE06417.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Trichophyton
           equinum CBS 127.97]
          Length = 1182

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 205/373 (54%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  + +  +   GY  PT IQ + +P ++   DV G+A+TG+GKT +F+LPM   
Sbjct: 550 WSQCGLGVQTLDVIRKLGYEGPTSIQSQAVPAIMSGRDVIGVAKTGSGKTIAFLLPMFRH 609

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R    M  P +LI+ PTRELA Q+      + K  NL      GG P + Q  +L+
Sbjct: 610 IRDQRPLENMEGPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELK 669

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   +   
Sbjct: 670 RGAEIIVCTPGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRPN 729

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT    ++ ++   L  P  I V   S  A  I    V      +K   LL+ 
Sbjct: 730 RQTVLFSATFPRNMEALARKTLSKPIEIIVGGRSVVAPEITQ-IVEVRNDDAKFVRLLEL 788

Query: 238 L--LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L  L S D  ++   ++F ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 789 LGNLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKA 848

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 849 GIFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 908

Query: 354 IKHIDAIEKLIEK 366
            ++   I K +++
Sbjct: 909 ERYSVDISKALKQ 921


>gi|145234506|ref|XP_001400624.1| ATP-dependent RNA helicase dbp3 [Aspergillus niger CBS 513.88]
 gi|134034068|sp|A2QFL3|DBP3_ASPNC RecName: Full=ATP-dependent RNA helicase dbp3
 gi|134057571|emb|CAK37981.1| unnamed protein product [Aspergillus niger]
          Length = 495

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 129/342 (37%), Positives = 193/342 (56%), Gaps = 10/342 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG--RARVRMPRTLIL 78
           +  PT IQ  T P +    DV GIA+TG+GKT  F LP L  L+    + +   P  +++
Sbjct: 98  FTSPTAIQSATWPFLFSGRDVIGIAETGSGKTLGFGLPCLKNLQDSAKKGKPYKPTAVMI 157

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA Q+ D   K+ +  ++ VA + GG+  E Q + L+  A +++ TPGR+ D  N
Sbjct: 158 SPTRELAMQIHDQISKFAELVDIKVACIFGGVKKEEQREALKTAA-IVVATPGRLKDLQN 216

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQTLLFSATMTDELQKVSEN 197
            G + +  ++ LV+DEADRMLD GF   I++I   +P + RQT++F+AT    ++ ++  
Sbjct: 217 DGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIIRPMPVSKRQTVMFTATWPPVVRDLAAT 276

Query: 198 FLQNPKRIEVNTPSST---AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG---IIF 251
           F+ +P  + +    S    A T     V     + K+  L+Q L + Q    +    ++F
Sbjct: 277 FMTSPVTVTIGGEPSADPRANTRIKQVVEVVKPHEKEQRLVQLLNKYQKGPSSSDKILVF 336

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           C  KK  V +   L  +GF V  IHG++ Q+ R K L +FK+G   ++VA+D+AARGLDI
Sbjct: 337 CLYKKEAVRVERLLWNKGFKVAGIHGDLGQQERFKSLESFKKGVSTVLVATDVAARGLDI 396

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           P V  V N   P   E+Y+HRIGRTGRAG  G A TL  + D
Sbjct: 397 PSVKLVINVTFPLTVEDYVHRIGRTGRAGAEGHAITLFTEVD 438


>gi|71656970|ref|XP_817024.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70882190|gb|EAN95173.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 798

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 132/361 (36%), Positives = 204/361 (56%), Gaps = 19/361 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DL + P +   V   GY +PTP+Q   IP+ L   D+   AQTG+GKTA+F++P++  
Sbjct: 347 FEDLYVEPALALNVAKCGYKQPTPVQRYGIPVCLNGDDLMACAQTGSGKTAAFLVPVVHY 406

Query: 62  ILEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           IL+ G    R RV  P  +I+ PTRELA Q+ D   K     ++   ++ GG P+  + +
Sbjct: 407 ILKHGVSPARERVSYPIAVIMAPTRELALQIYDEVRKLTFRTDIFYDVVYGGTPYPTRFE 466

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL---- 173
                 D+L+  PGR+ D F+RG +  + ++ LV+DEADRML+MGF   I+ + +     
Sbjct: 467 N-----DILVACPGRLKDIFDRGIVSFSRVKFLVLDEADRMLEMGFEEQIEYLVASRYTD 521

Query: 174 VPFT--RQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
           +P T  RQTL+FSAT    +  +++ +L Q+   + V    ST + I    V    Q S+
Sbjct: 522 MPQTTERQTLMFSATFPQRILNLAKRYLRQHYYLLTVGRVGSTTKNITQKIVRV--QESE 579

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K   L +++  Q      +IF   K+    L ++L+ +G     IHG+  Q  R + L +
Sbjct: 580 KMDKLFEVIYQQKQTDLVLIFVETKRAAEELHYALKSEGIPSATIHGDRRQFDRERALRD 639

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK+G   ++VA+D+A+RGLD+P+V HV  +D+P   ++Y HRIGRTGRAG  G A +   
Sbjct: 640 FKDGITPILVATDVASRGLDVPNVAHVIQYDLPKEMDDYTHRIGRTGRAGNKGTATSFYN 699

Query: 351 K 351
           K
Sbjct: 700 K 700


>gi|333026815|ref|ZP_08454879.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
 gi|332746667|gb|EGJ77108.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
          Length = 492

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 128/348 (36%), Positives = 190/348 (54%), Gaps = 7/348 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FADL + PK + A L A G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L 
Sbjct: 69  FADLDM-PKALEAALGAQGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLA 127

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                RA    P  L+L PTRELA QV D    Y ++  L +A ++GG+P   Q   L R
Sbjct: 128 RTAGKRAEAGQPLALVLVPTRELAQQVTDALTPYARSVRLRLATVVGGMPIGRQATALRR 187

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+VL+ TPGR+ D  +RG   ++ + + V+DEAD+M DMGF+P +  +   V    Q +
Sbjct: 188 GAEVLVATPGRLKDLIDRGHCRLDQVAVTVLDEADQMTDMGFMPQVTALLDQVRPGGQRM 247

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +  +   +L +P    V+  +    T+EH  +  +   + K A+  ++   
Sbjct: 248 LFSATLDRNVDLLVRRYLNDPVVHSVDPSAGAVTTMEHHVL--HVHGADKHAIATEIAAR 305

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   ++F + K  V  L   L + G    A+HG   Q  R + L  FK G + ++VA
Sbjct: 306 DGRV---LLFLDTKHAVDRLTEHLLRSGVRAAALHGGKSQPQRTRTLEQFKTGHVSVLVA 362

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +++AARG+ + D+  V N D P   ++Y+HR GRT RAGR G+  TLV
Sbjct: 363 TNVAARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGRSGRVATLV 410


>gi|325180097|emb|CCA14499.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 836

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 127/350 (36%), Positives = 196/350 (56%), Gaps = 7/350 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  V  AV+  GY  PTPIQ K++PL+L   DV G+A+TG+GK+A+F++P++  
Sbjct: 28  FQHLGLSNPVYRAVMAMGYKVPTPIQRKSLPLILSGKDVVGMARTGSGKSAAFLIPLIEK 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++   RV + R L+L PTRELA Q     +   K  +L V+L++GG   E Q   L   
Sbjct: 88  LKEHSTRVGL-RGLVLAPTRELALQTLQFTKGLAKYTSLRVSLIVGGEGMEQQFSALASN 146

Query: 123 ADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D+L+ TPGR++ H        + ++E +V DEADR+ +MGF   +  I S +P  RQTL
Sbjct: 147 PDILVATPGRLMHHLQEIPDFNLKSVEYVVFDEADRLFEMGFADQLHEILSQMPPNRQTL 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC--ALLQQLL 239
           LFSAT+   L + +   L  P  I ++  +  +E ++  F    +         L++  L
Sbjct: 207 LFSATLPSVLAQFARAGLNEPAMIRLDVENKMSENLKMAFFTVRSDDKPAVFVHLVRDFL 266

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     IIF   + +V  L   L         ++G +DQ SR   ++ F+ G   L+
Sbjct: 267 PKND---QTIIFTATRHHVEFLHQLLIANDIESSCVYGEMDQTSRKLNIAKFRAGKTNLL 323

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           + +D+AARG+DIP + +V N+  P  A+ ++HR+GR  RAG+ G AF+L+
Sbjct: 324 LVTDVAARGIDIPLLNNVINYSFPPTAKLFVHRVGRAARAGKSGTAFSLL 373


>gi|302869748|ref|YP_003838385.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302572607|gb|ADL48809.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca
           ATCC 27029]
          Length = 417

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 129/347 (37%), Positives = 182/347 (52%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  GL+P +V  +   G   P PIQ  TIP  L   DV G  +TG+GKT +F LP+L  
Sbjct: 8   FAATGLAPALVSELAAQGISAPFPIQAATIPDSLAGRDVLGRGRTGSGKTLAFGLPLLHR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RAR   P  L+L PTRELAAQV +    Y     L  A ++GG+    Q   L  G
Sbjct: 68  TAGRRARPGRPLALVLVPTRELAAQVTEALAPYAATLGLRCATVVGGLSLTRQAAALRAG 127

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+VL+ TPGR+ D  +RG   ++ + I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 128 AEVLVATPGRLHDLIDRGDARLDQVTITVLDEADQMADMGFLPQVTKLLEQVAPGGQRML 187

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++   FL +P    V+  ++T   + H  +   A+  K  AL     +  
Sbjct: 188 FSATLDRGVDRLVRRFLTDPVTHSVDPGTATVTAMTHHVLHLDAE-DKPAALAHIAAREG 246

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T    I+F   K     +   L  +G    A+HG   Q  R +IL  F+ G +  +VA+
Sbjct: 247 RT----IVFIATKHRADRVARQLLAKGVRAAALHGGKSQPQRTRILEQFRTGQVTALVAT 302

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+ +  +  V N D P  A++Y+HR GRT RAG  G   TLV
Sbjct: 303 DVAARGIHVDGLDLVVNADPPTEAKDYLHRGGRTARAGESGTVVTLV 349


>gi|262164692|ref|ZP_06032430.1| ATP-dependent RNA helicase [Vibrio mimicus VM223]
 gi|262027072|gb|EEY45739.1| ATP-dependent RNA helicase [Vibrio mimicus VM223]
          Length = 430

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 201/368 (54%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A L     +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 19  MSFSSLALSADLIQA-LPKEITQPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 77

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++     G    L    L GG+    Q   L 
Sbjct: 78  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTHVGTPLGLNTLCLCGGVDKAEQQNALA 133

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 134 ENPNILVATTGRLFDLTQSG-LSLNRVTTLVLDEADRLLDMGFWPQVQALASQTASVRQT 192

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  +  P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 193 VMCSATFSDDLKLKAQQLMHAPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 251

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK G+ Q+++
Sbjct: 252 HQ--WPQVLVFIGAKENADSLTKKLNKAGVVATALHGDKSQTEREAALAEFKNGSTQVLI 309

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 310 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAI 369

Query: 361 EKLIEKKV 368
             L ++++
Sbjct: 370 RTLTQREL 377


>gi|5059030|gb|AAD38876.1|AF110008_1 p68 RNA helicase [Molgula occulta]
          Length = 619

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 136/403 (33%), Positives = 215/403 (53%), Gaps = 26/403 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    +   +   G+ +PTPIQ    P  +  HD  GIA+TG+GKT  F+LP +  
Sbjct: 151 FQEAGFPDYIYGTLNXQGFSEPTPIQAIGWPNAMSGHDCVGIAKTGSGKTLGFILPAIVH 210

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L+ G      P  L+L PTRELA QV     ++G + ++    + GG     Q 
Sbjct: 211 INAQPYLDPGDG----PIVLVLCPTRELAQQVQQVAAEFGSSSHIKNTCVYGGASKGPQL 266

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + LERG +++I TPGR++D   + K  +     LV+DEADRMLDMGF P I+ I S +  
Sbjct: 267 RDLERGCEIVIATPGRLIDFLEQKKTNLRRCTYLVLDEADRMLDMGFEPQIRKIISQIRP 326

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCAL 234
            RQTL++SAT   E+ K++ +FL +   ++V    ST  +  H    +    Q  +K   
Sbjct: 327 DRQTLMWSATWPKEVSKLASDFLGDFVHVQV---GSTGLSANHNILQIVDVCQPMEKDEK 383

Query: 235 LQQLLQS--QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           L +L++    ++    IIF   K+    L  ++ + G+    IHG+  Q  R  +L+ F+
Sbjct: 384 LMRLMEEIMGESENKTIIFTETKRRCDELTRTMRRDGWPAMCIHGDKSQPERDWVLNEFR 443

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+D+A+RGLD+ DV  V N+D P++ E+Y+HRIGRT RA + G A+T    +
Sbjct: 444 SGRSPILVATDVASRGLDVHDVKFVINYDFPSQCEDYVHRIGRTARAEQKGTAYTFFTYD 503

Query: 353 DIKHI-DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           + K   D +  L E K         ++NP L ++ ++  N+ +
Sbjct: 504 NAKQAKDLVGILQEAK--------QAVNPKLLEMGMSFRNYGK 538


>gi|85095256|ref|XP_960042.1| hypothetical protein NCU05782 [Neurospora crassa OR74A]
 gi|74615933|sp|Q7S5R1|DBP3_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-3
 gi|28921501|gb|EAA30806.1| hypothetical protein NCU05782 [Neurospora crassa OR74A]
          Length = 614

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 135/367 (36%), Positives = 190/367 (51%), Gaps = 31/367 (8%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK-------GRARVR 71
           A Y  PTPIQ  + P  L   DV GIA+TG+GKT +F LP +  L          R R  
Sbjct: 197 AAYTNPTPIQSASWPFSLSGRDVIGIAETGSGKTMAFSLPCVESLASRPKPKFNSRDRTA 256

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER--GADVLICT 129
            PR +I+ PTRELA Q             L+   + GG     Q   L +  G D++  T
Sbjct: 257 HPRAVIVSPTRELAMQTHAALSGLASLVGLSAVCIFGGSDKNEQRNLLYKNNGVDIITAT 316

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTRQTLLFSATM 187
           PGR+ D  + G + + N+   V+DEADRMLD GF   I+ I S  P    RQTL+F+AT 
Sbjct: 317 PGRLKDFLSEGSISLANVSFAVLDEADRMLDRGFSEDIKLILSGCPPKEQRQTLMFTATW 376

Query: 188 TDELQKVSENFLQNPKR------------------IEVNTPSSTAETIEHCFVATYAQYS 229
             ++QK++E+++ NP +                  IE+   S   + +E   V    +  
Sbjct: 377 PLDIQKLAESYMINPAQVTIGHRTRAGGDGEGNGNIELQANSRIEQKVE--VVDPRGKEF 434

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           +   LL++  +        ++FC  KK  V +   L ++G  V +IHG++ Q  R + L 
Sbjct: 435 RLYELLKEAQKGSQKDDRILVFCLYKKEAVRVEQFLSRKGIKVASIHGDLRQDQRTRSLE 494

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK GT  ++VA+D+AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG+ GKA TL 
Sbjct: 495 AFKSGTTTVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKLGKAITLF 554

Query: 350 AKEDIKH 356
            + D  H
Sbjct: 555 TEHDKAH 561


>gi|195030246|ref|XP_001987979.1| GH10918 [Drosophila grimshawi]
 gi|193903979|gb|EDW02846.1| GH10918 [Drosophila grimshawi]
          Length = 1791

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 124/352 (35%), Positives = 198/352 (56%), Gaps = 10/352 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L   V+  V+ +GY  PTPIQ  ++P++ +  D+   AQTG+GKTA+F+LPM+ 
Sbjct: 183 SFEGAQLRSIVLNNVIKSGYKVPTPIQKVSMPVISEGRDLMACAQTGSGKTAAFLLPMIC 242

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L  E     +  P+ +I+ PTRELA Q+     K+     L ++++ GG   + QN+ +
Sbjct: 243 KLLDEVDNVEIGKPQAVIVSPTRELAIQIFHEARKFAFTSYLKISIVYGGTSVKYQNECI 302

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---SLVPF 176
            +G  +LI TPGR+LD  +R  +       +V+DEADRMLDMGF   ++ I    ++ P 
Sbjct: 303 TKGCHLLIATPGRLLDFVDRTFITFEATRFVVLDEADRMLDMGFADSMRKIMQHQTMRP- 361

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             QTL+FSAT  +E+Q+++  FL N   + +         ++  F     ++ K+  L+ 
Sbjct: 362 EHQTLMFSATFPEEIQRMAGEFLNNYIFVAIGVVGGACSDVQQTF-HELKKFDKRSKLMD 420

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L +  D     I+F   K+    L   L +  F   +IHG+  Q  R + L +FK G +
Sbjct: 421 ILQEGAD---GTIVFVETKRGADFLASILSETKFPTTSIHGDRLQSQREQALRDFKTGHM 477

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           ++++A+ +AARGLDI +V HV N+D+P   ++Y+HRIGRTGR G  G+A + 
Sbjct: 478 KVLIATSVAARGLDIKNVKHVINYDMPKTVDDYVHRIGRTGRVGNRGRATSF 529


>gi|303279012|ref|XP_003058799.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459959|gb|EEH57254.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 485

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 133/389 (34%), Positives = 200/389 (51%), Gaps = 33/389 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +      V+  +  AG+  PTPIQ +  P VL   DV  +A+TG+GKT SF+LP +  
Sbjct: 62  FEEASFPDYVLSELRAAGFPTPTPIQSQAWPTVLSGRDVVAVAETGSGKTLSFLLPAVVH 121

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE G      P  L+L PTRELA Q+      +G +  +  A + GG P   Q 
Sbjct: 122 VNAQPYLEPGDG----PIALVLAPTRELAVQIQAEAAIFGASSKIKSACVYGGAPKGPQV 177

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G ++   TPGR++D      + +  +   V+DEADRMLDMGF P I+ I+  +  
Sbjct: 178 SALRDGVEICAATPGRLIDFIETRAVSLRRVTYFVLDEADRMLDMGFEPQIRKISDRIRP 237

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS-----STAETIEHCFVATYAQYSKK 231
            RQTLLF+AT   E++ V+ +FL +P  + V   S     + A++++   +    +Y K 
Sbjct: 238 DRQTLLFTATWPKEVEGVAADFLHDPVTVRVGDASLKANVNIAQSVD--VMDEDEKYGKL 295

Query: 232 CALLQQLLQ-----------SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
            +LL++ L            +  + +  I+F   K  V  +   L   GF   +IHG+  
Sbjct: 296 VSLLERQLDGGGKSAEDAEYAAASPRRIIVFLASKAKVDAVTRRLRTDGFPALSIHGDKS 355

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE-----NYIHRIGR 335
           Q  R  +L  F+ GT  +M+A+D+AARGLD+ DV  V N D P+        +Y+HR+GR
Sbjct: 356 QEEREWVLGEFRAGTSPVMLATDVAARGLDVKDVRCVINHDFPSSGASYLTLDYVHRVGR 415

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           TGRAG  G+A +     D +H  A+  L+
Sbjct: 416 TGRAGARGEAHSFFTSADARHAKALCALL 444


>gi|226329674|ref|ZP_03805192.1| hypothetical protein PROPEN_03584 [Proteus penneri ATCC 35198]
 gi|225202860|gb|EEG85214.1| hypothetical protein PROPEN_03584 [Proteus penneri ATCC 35198]
          Length = 303

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 116/298 (38%), Positives = 187/298 (62%), Gaps = 7/298 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS  ++ A+ D GY KP+PIQ + IP +L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 7   MTFADLGLSAPILTALNDLGYEKPSPIQQQCIPFLLNGNDVLGMAQTGSGKTAAFSLPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L++    ++ P+ L+L PTRELA QVA+  E + K+   + V  L GG  ++ Q + L
Sbjct: 67  HNLDES---LKAPQILVLAPTRELAVQVAEAIEDFSKHLPKVNVVALYGGQRYDVQLRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  V++ TPGR+LDH NRG L ++ ++ LV+DEAD ML MGFI  ++NI S +P   Q
Sbjct: 124 RQGPQVVVGTPGRLLDHLNRGTLDLSKLKGLVLDEADEMLRMGFIEDVENILSKIPAEHQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+ +PK + + +  +T   I   +  T+   ++K   L + L
Sbjct: 184 TALFSATMPEAIRRITRRFMNDPKEVRIQSSVTTRPDISQSYWMTFG--ARKNEALIRFL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++D     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+ + +
Sbjct: 242 EAED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQSLREQTLERLKKWSFR 298


>gi|326476402|gb|EGE00412.1| Pre-mRNA-processing ATP-dependent RNA helicase prp5 [Trichophyton
           tonsurans CBS 112818]
          Length = 1182

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 205/373 (54%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  + +  +   GY  PT IQ + +P ++   DV G+A+TG+GKT +F+LPM   
Sbjct: 550 WSQCGLGVQTLDVIRKLGYEGPTSIQSQAVPAIMSGRDVIGVAKTGSGKTIAFLLPMFRH 609

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R    M  P +LI+ PTRELA Q+      + K  NL      GG P + Q  +L+
Sbjct: 610 IRDQRPLENMEGPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELK 669

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   +   
Sbjct: 670 RGAEIIVCTPGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRPN 729

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT    ++ ++   L  P  I V   S  A  I    V      +K   LL+ 
Sbjct: 730 RQTVLFSATFPRNMEALARKTLSKPIEIIVGGRSVVAPEITQ-IVEVRNDDAKFVRLLEL 788

Query: 238 L--LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L  L S D  ++   ++F ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 789 LGNLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKA 848

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 849 GIFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 908

Query: 354 IKHIDAIEKLIEK 366
            ++   I K +++
Sbjct: 909 ERYSVDISKALKQ 921


>gi|330930035|ref|XP_003302864.1| hypothetical protein PTT_14848 [Pyrenophora teres f. teres 0-1]
 gi|311321492|gb|EFQ89040.1| hypothetical protein PTT_14848 [Pyrenophora teres f. teres 0-1]
          Length = 601

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 129/342 (37%), Positives = 188/342 (54%), Gaps = 8/342 (2%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK-GRARVRMPRTLI 77
           A +  PTPIQ  T P +L   D+ G+A+TG+GKT +F +P +  +    + + +  + +I
Sbjct: 205 AKFSAPTPIQAATWPFLLSGRDMVGVAETGSGKTLAFGVPCVRYISALPQDKRKGIKAVI 264

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           + PTRELA Q+ D          L+V  + GG+P + Q     R A +++ TPGR+ D  
Sbjct: 265 VSPTRELAVQIYDQLVALATPAGLSVVCVYGGVPKDPQVAAC-RKAHIVVATPGRLNDLI 323

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
             G   ++  E +V+DEADRMLD GF   I+ I S  P  RQTL+F+AT    ++ ++  
Sbjct: 324 GEGSADLSKAEYVVLDEADRMLDKGFEEAIRQIISQTPKKRQTLMFTATWPPSVRDLAST 383

Query: 198 FLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG----IIF 251
           F+ +P +I +  N        +    V        K   L QLL+   + KN     ++F
Sbjct: 384 FMNSPVKITIGDNQSGELRANVRIKQVVEVVDPRDKEQRLLQLLKQYQSGKNKDDRILVF 443

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           C  KK  V + + +  +GF V  IHG++ Q  R   L+ FKEG + L+VA+D+AARGLDI
Sbjct: 444 CLYKKEAVRIENFIRMKGFRVGGIHGDLSQEKRSASLAAFKEGHVPLLVATDVAARGLDI 503

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           P V  V N   P  AE+Y+HRIGRTGRAG+ G A TL    D
Sbjct: 504 PAVKVVINVTFPLTAEDYVHRIGRTGRAGKEGLAITLFTDHD 545


>gi|194214292|ref|XP_001915035.1| PREDICTED: similar to ATP-dependent RNA helicase DDX54 (DEAD box
           protein 54) (ATP-dependent RNA helicase DP97) (DEAD box
           RNA helicase 97 kDa) [Equus caballus]
          Length = 860

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 128/355 (36%), Positives = 194/355 (54%), Gaps = 2/355 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   V+  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F++PM   
Sbjct: 78  FQSMGLSYPVFRGVMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFER 137

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R L+L PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 138 LKTHSAQT-GARALVLSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHEN 196

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I   +P   QT+L
Sbjct: 197 PDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVL 256

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +   E ++  F+    + +K   LL  L  + 
Sbjct: 257 FSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFLLVR-EDAKAAVLLHLLRTAV 315

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K +   L   L  Q  S   I+  +DQ +R   L+ F  G    ++ +
Sbjct: 316 RPQDQTVVFVATKHHAEYLSELLTTQRVSCAHIYSALDQTARKINLAKFTHGKCSALIVT 375

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA +++ ++
Sbjct: 376 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYL 430


>gi|330465173|ref|YP_004402916.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
 gi|328808144|gb|AEB42316.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
          Length = 572

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 123/350 (35%), Positives = 187/350 (53%), Gaps = 10/350 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   +  A+   G   P  IQ  T+P  L   DV G  QTG+GKT +F LP+L  
Sbjct: 36  FEALGLPEPLARALARQGITTPFEIQRATVPDALAGRDVLGRGQTGSGKTLAFGLPLLAR 95

Query: 63  LEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  G RAR   PR LIL PTRELA QV D     G+   + +   +GG+P++ Q   L R
Sbjct: 96  IADGDRARPSRPRALILVPTRELAMQVNDALAPLGRTIGVFLKTAVGGVPYDRQIDALRR 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G +V++ TPGR+ D   RG   ++++EI V+DEAD+M DMGF+P + ++ +  P   Q L
Sbjct: 156 GVEVMVATPGRLADLIERGICKLDDVEITVLDEADQMADMGFLPEVTDLLAKTPAHAQRL 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQLL 239
           LFSAT+  ++  + + F+ +P        ++   T++H    +    ++    ++  +  
Sbjct: 216 LFSATLDADVDALVQRFMTDPVTHSTAPATAAVSTMDHHLLLIPPSDKFPVTASIAARAG 275

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++       I+F   +  V  L   L   G     +HG   QR R + L+ F+EG   ++
Sbjct: 276 RT-------IVFARTQLGVDRLVSQLAAVGVRAGGLHGGKTQRMRTRTLAEFREGRTNVL 328

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           VA+D+AARG+ +  V  V + D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 329 VATDVAARGIHVDGVTLVLHVDPPKDPKDYLHRAGRTARAGETGAVATLV 378


>gi|295131314|ref|YP_003581977.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
 gi|291375120|gb|ADD98974.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
          Length = 700

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 190/347 (54%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LG+  ++V A+   G   P  IQI  IP  +   DV G A TG+GKT +F +P+L+ 
Sbjct: 231 FSALGVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSR 290

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L         PR LIL PTRELA Q+AD       +  L+  L+ GG+ +  Q K  +RG
Sbjct: 291 LSATPREDNRPRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFKRG 350

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR++D    G   ++ + + V+DEAD M ++GF+  + +I   +P   Q LL
Sbjct: 351 VDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRLL 410

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + K+   ++  P   EV+    +  T+ H   A   +  +K  L+ ++    
Sbjct: 411 FSATLDGAVNKLVRRYMHEPVIHEVDPDKGSVATMTHH--AFQIKPHEKVGLMCEIANRS 468

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
               + I+F   ++    +   L + G    A+HG + Q +R ++L+ FK+G++ ++VA+
Sbjct: 469 ---GHTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVAT 525

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+ DV  V   D P   ++Y+HR GRT RAG  G   +LV
Sbjct: 526 DVAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLV 572


>gi|297579966|ref|ZP_06941893.1| ATP-dependent RNA helicase [Vibrio cholerae RC385]
 gi|297535612|gb|EFH74446.1| ATP-dependent RNA helicase [Vibrio cholerae RC385]
          Length = 437

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 130/366 (35%), Positives = 199/366 (54%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A L     +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 23  MSFSSLALSADLIQA-LPKAITEPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++   + G    L    L GG+    Q   L 
Sbjct: 82  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKAEQQNALA 137

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q +       RQT
Sbjct: 138 ENPTILVATTGRLFDLTQSG-LSLNRVTTLVLDEADRLLDMGFWPQVQALAIQTASVRQT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +DEL+  ++  ++ P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 197 VMCSATFSDELKLKAQQLMRAPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK G+ Q+++
Sbjct: 256 HQ--WPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLI 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 314 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAI 373

Query: 361 EKLIEK 366
             L ++
Sbjct: 374 RTLTQR 379


>gi|261212735|ref|ZP_05927019.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
 gi|260837800|gb|EEX64477.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
          Length = 408

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 201/368 (54%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A L     +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 1   MSFSSLALSADLIQA-LPKEITQPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++     G    L    L GG+    Q   L 
Sbjct: 60  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 116 ENPNILVATTGRLFDLTQSG-LSLNRVTTLVLDEADRLLDMGFWPQVQALASQTASVRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +DEL+  ++  ++ P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 175 VMCSATFSDELKLKAQQLMRAPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 233

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK G  Q+++
Sbjct: 234 HQ--WPQVLVFIGAKENADSLTKKLNKAGVVATALHGDKSQTEREAALAEFKNGLTQVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  A+ Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAQTYVHRVGRTARAGQQGIALSLVCHGEMDALNAI 351

Query: 361 EKLIEKKV 368
             L ++++
Sbjct: 352 RTLTQREL 359


>gi|302804021|ref|XP_002983763.1| hypothetical protein SELMODRAFT_268770 [Selaginella moellendorffii]
 gi|300148600|gb|EFJ15259.1| hypothetical protein SELMODRAFT_268770 [Selaginella moellendorffii]
          Length = 418

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/373 (35%), Positives = 211/373 (56%), Gaps = 10/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +  +LG++  +V A  + G   PTP+Q   +P +L+  DV G+AQTG+GKTA+F LP+L 
Sbjct: 3   EIKELGVAEWLVGACKELGMRHPTPVQRACVPQILKGKDVLGMAQTGSGKTAAFALPILQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    +     L++ PTRELA Q++D F+  G   +L  A+++GG+    Q + L  
Sbjct: 63  RLGENPYGIF---ALVMTPTRELAFQISDQFKALGAGVHLRCAVVVGGMDMTTQAQILTE 119

Query: 122 GADVLICTPGRILDHFNRG---KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              V+I TPGRI  H           +  + LV+DEAD +LD GF   +Q I   +   R
Sbjct: 120 RPHVVIATPGRIKAHLGSDPDIAAAFSKTKFLVLDEADLLLDRGFQDELQTIFDGISKQR 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATMT +LQ + + F       +      T E+++  ++  +     K   L  L
Sbjct: 180 QTLLFSATMTGDLQALRDLFGHRAFFYQAYEGLKTVESLDQRYI--FMPGKVKNVYLTYL 237

Query: 239 LQSQDT--MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L++ +   +++ IIF ++ +    L   L++ G S  A+H    Q  R+  L+ FK G  
Sbjct: 238 LENLELGDIRSVIIFVSRCRTCHLLSLILDELGISAVALHSVKTQPQRLAALNQFKSGQA 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+A+RGLDIP V  V N+D+P   ++Y+HR+GRT RAGR G+A +LV + D++ 
Sbjct: 298 TILIATDVASRGLDIPTVDLVVNYDIPRFTKDYVHRVGRTARAGRGGRAISLVTELDVEL 357

Query: 357 IDAIEKLIEKKVD 369
           +  +E  + KK++
Sbjct: 358 VHEVESFLGKKLE 370


>gi|261332727|emb|CBH15722.1| ATP-dependent DEAD/H RNA helicase HEL64,putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 568

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 133/378 (35%), Positives = 214/378 (56%), Gaps = 18/378 (4%)

Query: 7   GLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT---I 62
           G+ P  +   L A  +  PTP+Q ++ P++L   D+ G+A+TG+GKT  F++P L    +
Sbjct: 107 GIVPPYLLKKLTAQNFTAPTPVQAQSWPVLLSGRDLVGVAKTGSGKTLGFMVPALAHIAV 166

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E  R+    P  ++L PTRELA Q+ +  +K     ++    + GG P   Q   L RG
Sbjct: 167 QEPLRSG-DGPMVVVLAPTRELAQQIEEETKKVIPG-DVYCGCVYGGAPKGPQLGLLRRG 224

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +L+ TPGR++D  +  ++ ++ +  LV+DEADRMLDMGF P ++ I   +   RQT++
Sbjct: 225 VHILVATPGRLIDFLDIKRINLHRVTYLVLDEADRMLDMGFEPQVRKICGQIRPDRQTVM 284

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT   E+Q+++  F +   RI V +    A + +   F+ T  Q   K   L++L+Q 
Sbjct: 285 FSATWPREIQRLAAEFQKQWIRISVGSTELQANKDVTQRFILT--QEFAKQDELRKLMQE 342

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  ++FC  K+    L   L + G+   AIHG+ +QR R  IL+ F++     +VA
Sbjct: 343 HREERV-LVFCKMKRTADELERQLRRWGYDAMAIHGDKEQRQREFILARFRKDPRLCLVA 401

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK------ 355
           +D+AARGLDI  +  V N+D P + ++Y+HRIGRTGRAG  G AFTL+ K++ +      
Sbjct: 402 TDVAARGLDIKQLETVINYDFPMQIDDYVHRIGRTGRAGAKGDAFTLITKKEAQITPSVL 461

Query: 356 --HIDAIEKLIEKKVDWL 371
              I  +E+  ++  DW+
Sbjct: 462 KELIGILERAQQEIPDWM 479


>gi|301118572|ref|XP_002907014.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262108363|gb|EEY66415.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 2091

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/381 (34%), Positives = 208/381 (54%), Gaps = 7/381 (1%)

Query: 3    FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
            +   G S +++  +   GY +P  IQ + +P ++   DV GIA+TG+GKT +F+LPM   
Sbjct: 1492 WTQCGFSVRMLQLIKKHGYEEPFAIQKQALPAIMSGRDVIGIAKTGSGKTLAFLLPMFRH 1551

Query: 61   TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + +        P  +I+ P RELA Q+     K+ K   L    + GG     Q   L+
Sbjct: 1552 VLAQPPLQENEGPIGIIMAPARELAQQIYVEARKFSKGLGLRATAVYGGSSVSEQIANLK 1611

Query: 121  RGADVLICTPGRILD--HFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            RG+D++ICTPGR++D    + GK++ +  +  +V+DEADRM DMGF P I  I   +   
Sbjct: 1612 RGSDIVICTPGRMIDILCMSAGKMVSLQRVTYVVLDEADRMFDMGFEPQITKIMMNIRPD 1671

Query: 178  RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            RQTLLFSAT    ++ ++   L+ P  I V T S+ +  I   +V    +  K   LLQ 
Sbjct: 1672 RQTLLFSATFPRSVESLARKVLKKPVEITVGTRSTASGDITQ-YVEVREEDDKFMRLLQ- 1729

Query: 238  LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            LL       N ++F N+++    +   L K G+   ++HG  DQ  R   + +FK     
Sbjct: 1730 LLGLWYEKGNILVFVNKQQACDQIFQDLMKAGYPALSLHGGKDQVDRDYTIDDFKRKVRT 1789

Query: 298  LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +MVA+ +A RGLD+ D+  V N+  PN  E+Y+HR+GRTGRAGR G A+T ++ ++ ++ 
Sbjct: 1790 VMVATSVAGRGLDVKDLVLVINYHCPNHMEDYVHRVGRTGRAGRKGTAYTFISPDEEEYS 1849

Query: 358  DAIEKLIEKKVDWLNGDLSSL 378
              + K +E     +  +L++L
Sbjct: 1850 VDLVKALENAKQTIPPELTAL 1870


>gi|291001325|ref|XP_002683229.1| ATP-dependent dead box RNA helicase [Naegleria gruberi]
 gi|284096858|gb|EFC50485.1| ATP-dependent dead box RNA helicase [Naegleria gruberi]
          Length = 892

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 118/355 (33%), Positives = 201/355 (56%), Gaps = 6/355 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  GLS  ++  +   G+  PTPIQ  +IP++ Q  DV  +A+TG+GKT S++ P+   
Sbjct: 40  FAKFGLSQLLLKQIKRCGFFNPTPIQQSSIPVITQGRDVIAMARTGSGKTVSYLFPLFER 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLER 121
           L+   + +   R +I+ PTREL  QV      + GK  +L   +L GG   E Q ++L  
Sbjct: 100 LDYKHSSIVGARAVIIVPTRELVLQVNKVIYDFIGKTSDLKTCMLFGGKSMEGQFERLSA 159

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D++I TPGR+L       L +  +E +V DEADR+ +MG    +  I + +P TRQTL
Sbjct: 160 NPDIIIATPGRLLHIILETGLSLKRVEYVVFDEADRLFEMGLSEQLYQIIAKLPTTRQTL 219

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQLL 239
           LFSAT+   + + S+  L +P+ I +++    ++ I     FV +  + +    LL  ++
Sbjct: 220 LFSATLPSAVAEFSKAGLTSPELIRLDSEVKVSDNIRLSGLFVRSNEKVAALLYLLNSVI 279

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++T    IIF   + +                 ++G++DQ++RM+ L  F+ G   ++
Sbjct: 280 SHRETT---IIFIPTRHHAEYFLTLFTHYKIEATVVYGSMDQQARMENLDKFRNGEANIL 336

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           + +D+AARG+DIPDV +V N++ P + + ++HR+GR GRAG+ G A++L+A +++
Sbjct: 337 LVTDVAARGIDIPDVNNVINYNFPGKPKLFVHRVGRVGRAGKVGTAYSLIAPDEV 391


>gi|87240993|gb|ABD32851.1| Helicase, C-terminal; Zinc finger, CCHC-type; GUCT [Medicago
           truncatula]
          Length = 753

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 216/379 (56%), Gaps = 12/379 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +D + L L  ++V ++ D G  +  PIQ   +   L+  D+   A+TGTGKT +F +P++
Sbjct: 108 LDISKLDLPSQLVDSLRDRGITQLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPII 167

Query: 61  TILEKGR-----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L+ G+     +R R+PR L+L PTRELA QV     K    Y  TV +  GG+ +  Q
Sbjct: 168 NGLDDGQDSGPYSRRRLPRALVLAPTRELAKQVEKEI-KESAPYLKTVCIY-GGVSYVTQ 225

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG DV++ TPGR++D  N   L ++ +E LV+DEAD+ML +GF   ++ I   +P
Sbjct: 226 QSALSRGVDVVVGTPGRLIDLINGNTLKLSEVEYLVLDEADQMLAVGFEEDVEVILEKLP 285

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCA 233
             RQ++LFSATM   ++K++  +L NP  I++  +     AE I+    A  A  + K  
Sbjct: 286 AKRQSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAEGIK--LYAISATSTSKRT 343

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +L  L+         I+F   K++   +  +L     +  A+HG+I Q  R + L+ F++
Sbjct: 344 ILSDLITVYAKGGKTIVFTQTKRDADEVSLAL-TNSITSEALHGDISQHQRERTLNGFRQ 402

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+D+A+RGLDIP+V  + ++++PN  E ++HR GRTGRAG+ G A  +     
Sbjct: 403 GKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKLGTAILMFTGSQ 462

Query: 354 IKHIDAIEKLIEKKVDWLN 372
            + + ++E+ +  K +++N
Sbjct: 463 RRTVRSLERDVGCKFEFVN 481


>gi|290955325|ref|YP_003486507.1| DEAD-box RNA-helicase [Streptomyces scabiei 87.22]
 gi|260644851|emb|CBG67937.1| putative DEAD-box RNA-helicase [Streptomyces scabiei 87.22]
          Length = 459

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 125/349 (35%), Positives = 186/349 (53%), Gaps = 9/349 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P ++  + D G  +P PIQ  T+P  L   DV G A+TG+GKT +F L +L  
Sbjct: 29  FDALGLPPALLRTMTDLGVTEPFPIQAATLPHALAGRDVLGRARTGSGKTLAFGLALLVR 88

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  + P  L+L PTRELA QV D    Y +   + +  ++GG+    Q   L  G
Sbjct: 89  TAGRRAESKRPLALVLVPTRELAQQVTDALTPYAETLGVRLTTVVGGLSINKQQAALRAG 148

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+VL+ TPGR+ D  +R   ++N + I V+DEAD+M D+GF+P +  I   VP   Q LL
Sbjct: 149 AEVLVATPGRLADLVSRRDCVLNQVRITVLDEADQMCDLGFLPQVSEILEQVPADGQRLL 208

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  ++ ++  + L +P    V+  + +  T+EH  +  +       A       ++
Sbjct: 209 FSATLDRDVDQLVRDHLHDPVPASVDRVAGSVTTMEHHVLNIHGADKYATA-------TE 261

Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++G  ++F + K  V      L   G    A+H    Q  R   L  FK+G I ++V
Sbjct: 262 IAARDGRVLMFLDTKAGVDQFTRHLRASGVRAGALHSGKSQPQRTHTLGQFKDGLITVLV 321

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           A+++AARG+ I  +  V N D P  A++Y+HR GRT RAG  GK  TLV
Sbjct: 322 ATNVAARGIHIEALDLVVNVDPPADAKDYLHRGGRTARAGESGKVVTLV 370


>gi|256269719|gb|EEU04989.1| Dbp3p [Saccharomyces cerevisiae JAY291]
          Length = 523

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 129/342 (37%), Positives = 201/342 (58%), Gaps = 8/342 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           + KPTPIQ    P +L   DV G+A+TG+GKT +F +P ++ L   + + R  + L++ P
Sbjct: 132 FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKK-RGIQVLVISP 190

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TRELA+Q+ DN         +    + GG+P + Q  +L++ + V++ TPGR+LD    G
Sbjct: 191 TRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKK-SQVVVATPGRLLDLLQEG 249

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQTLLFSATMTDELQKVSENFL 199
            + ++ +  LV+DEADRML+ GF   I+NI      + RQTL+F+AT   E+++++  F+
Sbjct: 250 SVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFM 309

Query: 200 QNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG---IIFCNQK 255
            NP ++ + NT   TA       V       K+  LL+ L +     K     +IF   K
Sbjct: 310 NNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYK 369

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           K    +  +L+  G++V AIHG++ Q+ R + L+ FK G   L++A+D+AARGLDIP+V 
Sbjct: 370 KEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVK 429

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            V N   P   E+Y+HRIGRTGRAG+ G A TL  +++ KH+
Sbjct: 430 TVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQE-KHL 470


>gi|254284613|ref|ZP_04959580.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           AM-19226]
 gi|150425398|gb|EDN17174.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           AM-19226]
          Length = 428

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 130/366 (35%), Positives = 201/366 (54%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A L     +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 23  MSFSSLALSADLIQA-LPKAITEPTAIQTLMIPAMLTGKDVLALANTGSGKTLAYGLPLL 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++   + G    L    L GG+    Q   L 
Sbjct: 82  ERLKTSPEQ----QALMLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKTEQQNALA 137

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 138 ENPNILVATTGRLFDLTQSG-LSLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 197 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK G+ Q+++
Sbjct: 256 HQ--WPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLI 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 314 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIAVSLVCHGEMDALNAI 373

Query: 361 EKLIEK 366
             L ++
Sbjct: 374 RTLTQR 379


>gi|331238187|ref|XP_003331749.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28 [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
 gi|309310739|gb|EFP87330.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28 [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
          Length = 834

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 134/411 (32%), Positives = 207/411 (50%), Gaps = 47/411 (11%)

Query: 18  DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK-----GRARVRM 72
           + GY +P+PIQ + IPL L   D+ GIA+TG+GKTASFV+PMLT + K        R   
Sbjct: 415 EVGYKEPSPIQRQAIPLGLNNRDLIGIAETGSGKTASFVIPMLTYIGKLPPLTDDNRHLG 474

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
           P  LIL PTRELA Q+     K+          ++GG   E Q   +  GA+++I TPGR
Sbjct: 475 PYALILAPTRELAQQIEVETNKFALRLGYRCVSIVGGKAMEEQALNMRDGAEIIIATPGR 534

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--------------- 177
           + D   R  L++     +V+DEADRM+++GF   +  I   +P +               
Sbjct: 535 LKDCIERHVLVLGQCTYVVMDEADRMINLGFEEVVNFILDQLPLSNLKPDTEEAEDSSKM 594

Query: 178 -------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
                              RQT++FSATM   ++++++ +L+ P  + +       +T++
Sbjct: 595 TSFVGGVEGFDLTGAKGLYRQTVMFSATMPPAVERLAKKYLRRPAVVTIGVAGQAVDTVD 654

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
                   +  K+  LL+ L  +Q      I+F NQKK    L   + + G+S   +H  
Sbjct: 655 QQVEFLPNEDKKRGRLLEVL--NQGHTPPIIVFVNQKKTADQLAKDISRAGWSTTTLHSG 712

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
            +Q  R   L++ + G   ++VA+DLA RG+D+PDVG V NF +    E Y+HRIGRTGR
Sbjct: 713 KNQEQREAALASLRAGESDILVATDLAGRGIDVPDVGLVVNFQMAGTIEAYVHRIGRTGR 772

Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
           AG+ G A T +  +D       + + + K + +   +S   P L K + AQ
Sbjct: 773 AGKVGTAITFLTNDD------ADVMYDLKQEIMKSPVSKCPPELAKHEAAQ 817


>gi|190407035|gb|EDV10302.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
 gi|207345345|gb|EDZ72198.1| YGL078Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259146428|emb|CAY79685.1| Dbp3p [Saccharomyces cerevisiae EC1118]
          Length = 523

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 129/342 (37%), Positives = 201/342 (58%), Gaps = 8/342 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           + KPTPIQ    P +L   DV G+A+TG+GKT +F +P ++ L   + + R  + L++ P
Sbjct: 132 FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKK-RGIQVLVISP 190

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TRELA+Q+ DN         +    + GG+P + Q  +L++ + V++ TPGR+LD    G
Sbjct: 191 TRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKK-SQVVVATPGRLLDLLQEG 249

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQTLLFSATMTDELQKVSENFL 199
            + ++ +  LV+DEADRML+ GF   I+NI      + RQTL+F+AT   E+++++  F+
Sbjct: 250 SVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFM 309

Query: 200 QNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG---IIFCNQK 255
            NP ++ + NT   TA       V       K+  LL+ L +     K     +IF   K
Sbjct: 310 NNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYK 369

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           K    +  +L+  G++V AIHG++ Q+ R + L+ FK G   L++A+D+AARGLDIP+V 
Sbjct: 370 KEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVK 429

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            V N   P   E+Y+HRIGRTGRAG+ G A TL  +++ KH+
Sbjct: 430 TVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQE-KHL 470


>gi|321459437|gb|EFX70490.1| hypothetical protein DAPPUDRAFT_61214 [Daphnia pulex]
          Length = 509

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 122/347 (35%), Positives = 198/347 (57%), Gaps = 5/347 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK---G 66
           P+++ AV +  +  P+PIQ +  P++L+ HD+ GIAQTGTGKT +F+LP +  +E     
Sbjct: 71  PELLEAVQNQQFKDPSPIQSQAWPVLLKGHDLIGIAQTGTGKTLAFLLPAMIHIEGQPIS 130

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           RA    P  LI+ PTRELA Q+     K+     +    + GG     Q   + +G +++
Sbjct: 131 RAERSGPSVLIMAPTRELAQQIEREVAKFPWK-GIKCLCVYGGGDRRQQIGAVAKGVEIV 189

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+ D    G L  +++  +V+DEADRMLD+GF P I+ I   V   RQ ++ SAT
Sbjct: 190 VATPGRLYDLMQAGALKTSSVSYVVLDEADRMLDLGFEPQIKKILIDVRPDRQIIMTSAT 249

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +++++  ++ NP ++ V T    A       V    +  K+  L+   +++ D   
Sbjct: 250 WPEGIRRIANEYMDNPLQVCVGTLDLAACHSVTQHVEILDEEEKRPRLID-FIRALDPND 308

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+F  +K     +   L   G S   IHG+ +Q  R + L++ + G ++L++A+D+A+
Sbjct: 309 KAIVFVGRKLVADQVASELSLIGISCQCIHGDREQIDREQALADLRSGDVKLLIATDVAS 368

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           RG+DI D+ H+ N+D P  AE Y+HRIGRTGRAGR G A + + +ED
Sbjct: 369 RGIDIKDITHILNYDFPRHAEEYVHRIGRTGRAGRTGIAISFMTRED 415


>gi|303274675|ref|XP_003056653.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461005|gb|EEH58298.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1177

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 124/358 (34%), Positives = 199/358 (55%), Gaps = 7/358 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A  GLS +V+  +  +G+ KP PIQ + +P+++   D   +A+TG+GKT  ++LPML  
Sbjct: 485 WAQAGLSNRVMELIRRSGFEKPMPIQCQCLPVIMSGRDCIAVAKTGSGKTLGYILPMLRH 544

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++  R  A+   P  +I+ PTREL  Q+  +  K+G+   +    + GG    AQ  +L+
Sbjct: 545 IKDQREIAQGDGPVGMIMGPTRELVTQIGKDCRKFGRCAGMVAVSVYGGSGVAAQIGELK 604

Query: 121 RGADVLICTPGRILDHFNRGKLLMNN---IEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RG +++ CTPGR++D    G   + N   +   V+DEADRM DMGF P I  I + +   
Sbjct: 605 RGCEIVACTPGRMIDILTTGAGRITNLRRVTYFVLDEADRMFDMGFEPQITRIMNNLRPD 664

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSAT    ++ ++   L NP  I+V   S     IE   V    +  +    L+ 
Sbjct: 665 RQTVMFSATFPHAMEALARAALTNPIEIQVGGRSVVNSDIEQ-LVEMRPEEDRFLRALEL 723

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L +  +  K  IIF   +     +   L + G+   ++HG  +Q  R   +++FK     
Sbjct: 724 LGEWYERGKI-IIFVASQDKCDRIFRDLLRSGYPCLSLHGGKEQTDRECTIADFKSDVCN 782

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++VA+ +AARGLD+ D+  V N+D PN  E+Y+HR+GRTGRAG  G A T +++E+ K
Sbjct: 783 ILVATSVAARGLDVKDLRLVINYDTPNHLEDYVHRVGRTGRAGNKGTAVTFISEEEEK 840


>gi|320589959|gb|EFX02415.1| eukaryotic initiation factor 4a-12 [Grosmannia clavigera kw1407]
          Length = 403

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 200/370 (54%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   GY  P+ +Q + I  V +  D    AQ+GTGKTA+F + ML +
Sbjct: 31  FESMSLKENLLRGIYAYGYETPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQV 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +       R  + L+L PTRELA Q+    +  G   N+     IGG       +KL++G
Sbjct: 91  INTAS---RETQALVLSPTRELATQIQSVVKALGDYMNVQCHACIGGTNVGEDIRKLDQG 147

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I  +   +P   Q ++
Sbjct: 148 QHIVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNQGFREQIYEVYRYLPPATQVVV 207

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++ +++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 208 VSATLPQDVLEMTYKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTL- 266

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG++ Q+ R  I+ +F++   +++
Sbjct: 267 ----TITQAVIFCNTRRKVDWLTDKMRESNFTVSSMHGDMPQKERDSIMQDFRQFNTRVL 322

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 323 ISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRD 382

Query: 360 IEKLIEKKVD 369
           IE     ++D
Sbjct: 383 IELYYSTQID 392


>gi|323143171|ref|ZP_08077868.1| ATP-dependent RNA helicase SrmB [Succinatimonas hippei YIT 12066]
 gi|322417058|gb|EFY07695.1| ATP-dependent RNA helicase SrmB [Succinatimonas hippei YIT 12066]
          Length = 455

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/377 (34%), Positives = 207/377 (54%), Gaps = 15/377 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L  ++V   L  G+ +PT +Q   IP  L+ HD+ G A TGTGK+A+F+LP L
Sbjct: 1   MSFFDLDLPEEIVACALAQGWQQPTAVQTLVIPKALEGHDILGGAPTGTGKSAAFLLPAL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      + + + L+LEPTRELA QVAD   +      +   T A +IGG   + Q  
Sbjct: 61  ARLLTLENTLGV-KVLVLEPTRELAVQVADVASSLISAIPDAPYTSATIIGGAGRDMQR- 118

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             E+   + + TPGR+L+   +     + +EILVIDEADRMLDMGF   + +I   +   
Sbjct: 119 --EQTGTITVATPGRLLEFLRKDWFDPSTVEILVIDEADRMLDMGFRDDVASIVRELSNR 176

Query: 178 RQTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS----KKC 232
            QT+LFSAT+    +   +   L +P  + +       E +   F+++ A ++    +K 
Sbjct: 177 YQTMLFSATLEGFGINDFARQVLNDPIEVRLGAGGENDEKLPE-FLSSRAYFANDSEQKF 235

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            +L+ LL +       IIF   K  + ++   L + GF+  ++ G + Q  R   L  F 
Sbjct: 236 KILKHLLTT--VQGRSIIFVKTKSRLADVSGKLRRSGFAFASLQGELSQTERKAALRRFA 293

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           + +  ++VA+D+A+RGLD+PDV HV+N+D+P  A  Y+HR GRT RAG  G   ++V   
Sbjct: 294 DSSADILVATDVASRGLDLPDVTHVYNYDLPTSAAVYVHRSGRTARAGAKGVVISIVEGA 353

Query: 353 DIKHIDAIEKLIEKKVD 369
           D++ + AIE+  ++ ++
Sbjct: 354 DLEKLQAIERYTDRVIE 370


>gi|256371104|ref|YP_003108928.1| DEAD/DEAH box helicase domain protein [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256007688|gb|ACU53255.1| DEAD/DEAH box helicase domain protein [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 467

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 120/329 (36%), Positives = 181/329 (55%), Gaps = 6/329 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   +V      G ++PTPIQ   +P  L   DV G A TGTGKT +F L +L  
Sbjct: 18  FADLGVPEPLVAVATAQGLLEPTPIQRAALPDALAGRDVLGSAPTGTGKTLAFGLAVLAR 77

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +    AR + PR LIL PTRELA Q+AD  + + +    +VA+  GG+ +  Q ++L RG
Sbjct: 78  VSAS-ARAKHPRALILAPTRELAMQIADALDAFARAERRSVAVFYGGVGYGRQLQQLRRG 136

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR+ D   RG + ++++E++V+DEADRM DMGF+P ++ +       RQT+L
Sbjct: 137 VDVVVATPGRLADLRERGDVDLSHVEVVVVDEADRMADMGFLPEVRRLVQATSSERQTML 196

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    ++ +      +P R  V  P      + H F             LQ    + 
Sbjct: 197 FSATFEGPVETLVRELCHDPVRHVVTRPDDEQGEVGHHF-----WNVDPSERLQVTAAAV 251

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++FC  ++    +   L  +G +  AIHG+++QR R + L  F+ G I  +VA+
Sbjct: 252 RAAGPAVVFCRTRRGADRIAERLRGEGLATAAIHGDLNQRQRERALEGFRAGRIDALVAT 311

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIH 331
           D+AARG+ + DV  V +FD P R  +Y+H
Sbjct: 312 DVAARGIHVDDVPLVIHFDPPERTTDYVH 340


>gi|301610484|ref|XP_002934776.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 2
           [Xenopus (Silurana) tropicalis]
          Length = 399

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 128/368 (34%), Positives = 202/368 (54%), Gaps = 58/368 (15%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG++  V+C   +  G+ +PT IQI+ IP+ LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 21  FRELGVT-DVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQ 79

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G    +  A+++GGI   +Q+  L +
Sbjct: 80  TLLESPQRLY---ALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAK 136

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V+I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 137 KPHVVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L++P +  V++   T E ++  +V   +++  K         
Sbjct: 197 FLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQFYVFIPSKFKNK--------- 247

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                                                      R+  L+ FK  +  +++
Sbjct: 248 -------------------------------------------RLGSLNKFKAKSRSILL 264

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V++ D++    I
Sbjct: 265 ATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRI 324

Query: 361 EKLIEKKV 368
           E LI KK+
Sbjct: 325 EHLIGKKL 332


>gi|312221996|emb|CBY01936.1| hypothetical protein [Leptosphaeria maculans]
          Length = 602

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 128/342 (37%), Positives = 188/342 (54%), Gaps = 8/342 (2%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK-GRARVRMPRTLI 77
           A +  PTPIQ  T P +L   D+ G+A+TG+GKT +F +P +  +    + + +  + +I
Sbjct: 206 AKFTAPTPIQAATWPFLLSGRDMVGVAETGSGKTLAFGVPCVRYISSLPKEKRKGIKAVI 265

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           + PTRELA Q+ D          L V  + GG+P + Q     R A +++ TPGR+ D  
Sbjct: 266 VSPTRELAVQIYDQLVALANPAGLEVVCVYGGVPKDPQVAAC-RKAHIVVATPGRLNDLI 324

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
             G   ++  E +V+DEADRMLD GF   I+ I S  P  RQTL+F+AT    +++++  
Sbjct: 325 GDGSADLSKAEYVVLDEADRMLDKGFEEPIRQIVSQTPKKRQTLMFTATWPPSVRELAST 384

Query: 198 FLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG----IIF 251
           F+ +P +I +  N        +    V        K   L QLL+   + KN     ++F
Sbjct: 385 FMNSPVKITIGDNVSGELRANVRIKQVVEVIDPHAKEQRLIQLLKQYQSGKNKDDRILVF 444

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           C  KK  V + + +  +GF V  IHG++ Q  R   L+ FKEG + L+VA+D+AARGLDI
Sbjct: 445 CLYKKEAVRIENFIRMKGFRVGGIHGDLTQEKRSASLAAFKEGHVPLLVATDVAARGLDI 504

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           P V  V N   P  AE+Y+HRIGRTGRAG+ G A T   + D
Sbjct: 505 PAVKVVINVTFPLTAEDYVHRIGRTGRAGKEGLAITFFTEHD 546


>gi|269104500|ref|ZP_06157196.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268161140|gb|EEZ39637.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 430

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 124/354 (35%), Positives = 196/354 (55%), Gaps = 5/354 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-PRTLIL 78
            + + T IQ   IP+ +   D+   ++TG+GKT +F+LP +  + + +   R  PR LIL
Sbjct: 2   AFDQATEIQRTAIPVAILGKDILASSKTGSGKTLAFLLPAMQRMYRSKPFTRRDPRVLIL 61

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QV    +          AL++GG  F  Q K L +    ++ TPGR+ DH  
Sbjct: 62  TPTRELAKQVFAQLKPLNAGTPYDAALIVGGENFNDQVKALRKDPMFVVATPGRLADHLE 121

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR-QTLLFSATMTD-ELQKVSE 196
                ++ +E+L++DEADRMLD+GF   ++ I       R QTL+FSAT+   E+ +++ 
Sbjct: 122 HRSTYLDGLEMLILDEADRMLDLGFEKELRRIHEAASHRRRQTLMFSATLDHPEVVEMAH 181

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
             L  PKRI +   +   + I   F+      + K ALL ++L+++D     IIF   + 
Sbjct: 182 EMLNAPKRISIGHSAEEHKDITQRFILC-DNLTHKEALLNKILETED-YNQMIIFTATRA 239

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
           +   L   L  +     A+ GN++Q  R  I+S F+    +++V +D+A+RGLDI +V H
Sbjct: 240 DTDRLTKELNDRKLKAVALSGNLNQTQRNSIMSQFERFCHKILVTTDIASRGLDISNVSH 299

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           V NFD+P  AE Y+HR+GRTGRAG  G A + V  +D K    IE  +++ +++
Sbjct: 300 VINFDLPKHAEEYVHRVGRTGRAGNKGDAISFVGPKDWKSFKNIEAFLQQSIEF 353


>gi|242022822|ref|XP_002431837.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212517169|gb|EEB19099.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 630

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 121/363 (33%), Positives = 207/363 (57%), Gaps = 9/363 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P+++  +   G+  P+PIQ +  P++L   D+ GIAQTGTGKT +F+LP L  ++  +  
Sbjct: 232 PEILDEIEKQGFKVPSPIQSQAWPILLSGKDLIGIAQTGTGKTLAFLLPALIHIDGQKIP 291

Query: 70  VRMPR----TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
              PR     LI+ PTRELA Q+ +  +KY    N+    + GG     Q   ++ G ++
Sbjct: 292 GTKPRGGPNVLIIAPTRELALQIENEVKKYSYK-NIKCLCVYGGGNRREQINTVQEGVEI 350

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           +I TPGR+ D  N   + +++I  +V+DEADRMLDMGF P I+ +   +   RQ+++ SA
Sbjct: 351 IIATPGRLNDLVNNSYITLSSITYIVLDEADRMLDMGFEPQIRKLLLDIRPDRQSVMTSA 410

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           T  +++Q++++ ++ NP ++ + +   TA    ++  ++    +  KK  L   L   ++
Sbjct: 411 TWPNDVQRLAKRYMSNPIQVFIGSLDLTAVHSVLQRVYIIN--EGDKKSYLFDILRNLKE 468

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
                I+F  +K    +L   L    F    IHG  +Q  R + L +FK G +++++A+D
Sbjct: 469 EEDKIIVFVGKKNMADDLSCDLSLNRFMCQCIHGGREQMDREQALDDFKTGCVKILIATD 528

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +A+RG+DI D+  V N+D PN  E Y+HR+GRTGRAG+ G+A T   + +  H   +  +
Sbjct: 529 VASRGIDISDITKVLNYDFPNNIEEYVHRVGRTGRAGKTGEAITFFTRSNWMHAGDLISI 588

Query: 364 IEK 366
           +E+
Sbjct: 589 MEE 591


>gi|159478160|ref|XP_001697172.1| hypothetical protein CHLREDRAFT_119793 [Chlamydomonas reinhardtii]
 gi|158274646|gb|EDP00427.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 384

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 142/375 (37%), Positives = 209/375 (55%), Gaps = 26/375 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
            A+LGLSP+ + A+ + G     P+Q + +  +    DV   A+TG+GKT +F LP++  
Sbjct: 16  IANLGLSPETMDALANRGIFSLFPVQAQVLEPIASGRDVVCRAKTGSGKTLAFALPVVEN 75

Query: 61  ----TILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
               + L + R R R    PR ++L PTRELA QV+  FE       L V    GG+   
Sbjct: 76  LLEVSGLRRPRTRPRKGRSPRCVVLAPTRELANQVSREFESVCPA--LKVDSFYGGVSIS 133

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           AQ + LERG DV++ TPGR++D   RG L ++ +   ++DEAD MLDMGF   ++ I   
Sbjct: 134 AQMRSLERGVDVVVGTPGRVIDLMQRGSLKLDAVRYAILDEADSMLDMGFEQDMETILGA 193

Query: 174 VPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST---AETIEHCFVATYA 226
           +P      RQTLLFSAT+   ++ V++ + QNP  I++    +T   A+TI    +    
Sbjct: 194 MPTAAANERQTLLFSATLPKWVKSVAKRYQQNPLTIDLVGEENTGRLADTIR--LLVQQV 251

Query: 227 QYSKKCALLQQLLQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVC-AIHGNIDQR 282
           + ++K + LQ +L        G   IIF N K     +  +L    F+ C A+HG+I Q 
Sbjct: 252 EGAQKMSALQGVLSMYGNTAGGGKAIIFVNTKAKADEV--NLAVNEFAPCDALHGDISQA 309

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R K LS F+EG    +VA+D+AARGLDIP+V  V ++DVP   E ++HR GRTGRAG+ 
Sbjct: 310 QREKALSLFREGKYAALVATDVAARGLDIPNVDLVVHYDVPQDNEAFLHRSGRTGRAGKT 369

Query: 343 GKAFTLVAKEDIKHI 357
           G A  L    + + +
Sbjct: 370 GTAVVLFTDRESRAL 384


>gi|154308886|ref|XP_001553778.1| eukaryotic initiation factor 4A-12 [Botryotinia fuckeliana B05.10]
 gi|160385734|sp|A6S4N4|FAL1_BOTFB RecName: Full=ATP-dependent RNA helicase fal1
 gi|150852597|gb|EDN27789.1| eukaryotic initiation factor 4A-12 [Botryotinia fuckeliana B05.10]
          Length = 399

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 205/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + ML +
Sbjct: 27  FQDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQV 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 87  IDTA---VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 144 QHIVSGTPGRVADMIRRRNLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVV 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 204 VSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTL- 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++
Sbjct: 263 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 319 ISTDVWARGIDVQQVSLVINYDLPVNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRD 378

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 379 IELYYSTQIDEMPMNVADL 397


>gi|6321360|ref|NP_011437.1| Dbp3p [Saccharomyces cerevisiae S288c]
 gi|1708151|sp|P20447|DBP3_YEAST RecName: Full=ATP-dependent RNA helicase DBP3; AltName: Full=DEAD
           box protein 3; AltName: Full=Helicase CA3
 gi|172582|gb|AAA73137.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|1322595|emb|CAA96783.1| DBP3 [Saccharomyces cerevisiae]
 gi|285812127|tpg|DAA08027.1| TPA: Dbp3p [Saccharomyces cerevisiae S288c]
          Length = 523

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 129/342 (37%), Positives = 201/342 (58%), Gaps = 8/342 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           + KPTPIQ    P +L   DV G+A+TG+GKT +F +P ++ L   + + R  + L++ P
Sbjct: 132 FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKK-RGIQVLVISP 190

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TRELA+Q+ DN         +    + GG+P + Q  +L++ + V++ TPGR+LD    G
Sbjct: 191 TRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKK-SQVVVATPGRLLDLLQEG 249

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQTLLFSATMTDELQKVSENFL 199
            + ++ +  LV+DEADRML+ GF   I+NI      + RQTL+F+AT   E+++++  F+
Sbjct: 250 SVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFM 309

Query: 200 QNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG---IIFCNQK 255
            NP ++ + NT   TA       V       K+  LL+ L +     K     +IF   K
Sbjct: 310 NNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYK 369

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           K    +  +L+  G++V AIHG++ Q+ R + L+ FK G   L++A+D+AARGLDIP+V 
Sbjct: 370 KEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVK 429

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            V N   P   E+Y+HRIGRTGRAG+ G A TL  +++ KH+
Sbjct: 430 TVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQE-KHL 470


>gi|71747700|ref|XP_822905.1| ATP-dependent DEAD/H RNA helicase HEL64 [Trypanosoma brucei
           TREU927]
 gi|70832573|gb|EAN78077.1| ATP-dependent DEAD/H RNA helicase HEL64, putative [Trypanosoma
           brucei]
          Length = 568

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 133/378 (35%), Positives = 214/378 (56%), Gaps = 18/378 (4%)

Query: 7   GLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT---I 62
           G+ P  +   L A  +  PTP+Q ++ P++L   D+ G+A+TG+GKT  F++P L    +
Sbjct: 107 GIVPPYLLKKLTAQNFTAPTPVQAQSWPVLLSGRDLVGVAKTGSGKTLGFMVPALAHIAV 166

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E  R+    P  ++L PTRELA Q+ +  +K     ++    + GG P   Q   L RG
Sbjct: 167 QEPLRSG-DGPMVVVLAPTRELAQQIEEETKKVIPG-DVYCGCVYGGAPKGPQLGLLRRG 224

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +L+ TPGR++D  +  ++ ++ +  LV+DEADRMLDMGF P ++ I   +   RQT++
Sbjct: 225 VHILVATPGRLIDFLDIKRINLHRVTYLVLDEADRMLDMGFEPQVRKICGQIRPDRQTVM 284

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT   E+Q+++  F +   RI V +    A + +   F+ T  Q   K   L++L+Q 
Sbjct: 285 FSATWPREIQRLAAEFQKQWIRISVGSTELQANKDVTQRFILT--QEFAKQDELRKLMQE 342

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  ++FC  K+    L   L + G+   AIHG+ +QR R  IL+ F++     +VA
Sbjct: 343 HREERV-LVFCKMKRTADELERQLRRWGYDAMAIHGDKEQRQREFILARFRKDPRLCLVA 401

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK------ 355
           +D+AARGLDI  +  V N+D P + ++Y+HRIGRTGRAG  G AFTL+ K++ +      
Sbjct: 402 TDVAARGLDIKQLETVINYDFPMQIDDYVHRIGRTGRAGAKGDAFTLITKKEAQITPSVL 461

Query: 356 --HIDAIEKLIEKKVDWL 371
              I  +E+  ++  DW+
Sbjct: 462 KELIGILERAQQEIPDWM 479


>gi|306836062|ref|ZP_07469052.1| ATP-dependent RNA helicase RhlE [Corynebacterium accolens ATCC
           49726]
 gi|304568089|gb|EFM43664.1| ATP-dependent RNA helicase RhlE [Corynebacterium accolens ATCC
           49726]
          Length = 435

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 134/394 (34%), Positives = 206/394 (52%), Gaps = 7/394 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL  +VV  + D G  +  PIQ   IP VL   DV G   TG+GKT +F LP L  
Sbjct: 4   FAELGLPQRVVHVLNDQGITEAFPIQAAAIPDVLAGKDVLGRGPTGSGKTFTFGLPTLAR 63

Query: 63  LE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   G +    PR ++L PTRELA Q+    ++      L V  ++GG+      + L R
Sbjct: 64  LAGSGASTPGHPRAVVLAPTRELATQIQQRLDEPAAALGLRVLAVVGGVNINHHIRSLAR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+L+ TPGR  D   +GKL  + ++I  +DEAD+M DMGF+P ++ + +  P T Q L
Sbjct: 124 PVDLLVATPGRAQDLIAQGKLSFDKVQITTLDEADQMADMGFLPQVRKLLNYTPPTGQRL 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ K+ E FL +P        ++  E++ H       + ++   +++   ++
Sbjct: 184 LFSATLDGDVNKLVEQFLHDPVVHSTAPVTAAVESMSHHLFFVGDRPARNEVVMRIAARA 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I+F   K  V      L + G +   +HG+  Q +R + +S F +G+I ++VA
Sbjct: 244 GKT----IMFMRTKHGVDRQVKKLRRVGINAYPLHGDKGQGARTRAISGFADGSIPVLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI DV  V + D P   + Y+HR GRT R G  G   TLV  E    + A+ 
Sbjct: 300 TDIAARGIDIADVSLVVHVDPPAEHKAYLHRAGRTARGGATGTVVTLVTDEQRSEVAALI 359

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           K  +  V+    D+S  + P    ++     ARK
Sbjct: 360 K--KAGVNATEYDISHRDNPAGAPELRTVTGARK 391


>gi|221480806|gb|EEE19233.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
          Length = 657

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 203/379 (53%), Gaps = 21/379 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     ++  + + G   PT IQ++ IP +LQ  D+ GIA TG+GKT  F LPM  
Sbjct: 209 NFKDMRFPQPILKGLQERGISYPTQIQMQGIPAILQGRDIIGIAFTGSGKTLVFSLPM-- 266

Query: 62  ILEKGRARVRMPR-------TLILEPTRELAAQVADNFEKYGKNYN------LTVALLIG 108
           I+    + +R P         L++ P+RELA+Q  D    + K         L    +IG
Sbjct: 267 IMGALESEIRSPYLPGEGPFGLVVCPSRELASQTNDVCSFFCKKLEDGGYPALRCVCIIG 326

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G     Q K++ +G   ++ TPGR+ D  N+ +L +   E L  DEADRM+DMGF   ++
Sbjct: 327 GCSAVEQAKEVRQGVHCIVATPGRLTDMLNKRRLALQQCEYLCFDEADRMVDMGFEEEVR 386

Query: 169 NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
           N+       RQTLLFSATM  ++Q+ +++ L +P  + VN   + A  ++      Y + 
Sbjct: 387 NVLDSFGHQRQTLLFSATMPRKIQEFAKSALIDP--LVVNVGRAGAANLDVVQEVEYVKQ 444

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
             K   L   LQ   T    +IFC  KK+V ++   L  +G    A+HG + Q  R + +
Sbjct: 445 ENKLPYLLHCLQK--TAPPVLIFCENKKDVDDIQEYLLLKGVDAAAVHGGLAQEERSEAV 502

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             F+EG   ++V +D+A++GLD P + HV NFD+P   ENY+HRIGRTGR GR G A T 
Sbjct: 503 RAFREGRKDVLVGTDVASKGLDFPAIQHVINFDMPKEIENYVHRIGRTGRCGRTGVATTF 562

Query: 349 VAK--EDIKHIDAIEKLIE 365
           V K  E+   +D    LIE
Sbjct: 563 VNKNQEETVLLDLKALLIE 581


>gi|66807079|ref|XP_637262.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
 gi|74996736|sp|Q54KG1|DDX41_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx41; AltName:
           Full=DEAD box protein 41
 gi|60465669|gb|EAL63748.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
          Length = 671

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 132/361 (36%), Positives = 198/361 (54%), Gaps = 16/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ +   V+  +L+ G  KP+PIQ++ +P++L   D+ GIA TG+GKT  F LPM+  
Sbjct: 224 FKEMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPMVLF 283

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVAD-------NFEKYGKNYNLTVALLIGGI 110
             +   ++ +     P  LIL P+RELA Q  D          K G +  L   L IGGI
Sbjct: 284 ALEEECKLPIIQGEGPFGLILCPSRELARQTYDLVNSFTNALHKNGGHPQLRTLLAIGGI 343

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q    ++G  ++I TPGR+LD  N+ K+     + L +DEADR++D+GF   I+++
Sbjct: 344 DLREQEHIFKKGVHMIIATPGRLLDLLNKKKINFKLCKYLGLDEADRLIDLGFEDDIRSV 403

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q+ + + L  P  +EVN   + A  +       + +   
Sbjct: 404 LDNFTNQRQTLLFSATMPKKIQEFARSALVLP--VEVNVGRAGAANLNVTQEVEFVKPEA 461

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K   L + LQ   T    +IFC  KK+V ++   L  +     +IHG+  Q  R   +  
Sbjct: 462 KIVYLLECLQK--TPPPVLIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQDERESAIKA 519

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P++ HV NFD+P   ENYIHRIGRTGR G  G A T + 
Sbjct: 520 FREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTFIN 579

Query: 351 K 351
           K
Sbjct: 580 K 580


>gi|156052539|ref|XP_001592196.1| eukaryotic initiation factor 4A-12 [Sclerotinia sclerotiorum 1980]
 gi|160385735|sp|A7EM88|FAL1_SCLS1 RecName: Full=ATP-dependent RNA helicase fal1
 gi|154704215|gb|EDO03954.1| eukaryotic initiation factor 4A-12 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 399

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 205/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + ML +
Sbjct: 27  FQDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQV 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 87  IDTA---VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 144 QHIVSGTPGRVADMIRRRNLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVV 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 204 VSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTL- 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++
Sbjct: 263 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 319 ISTDVWARGIDVQQVSLVINYDLPVNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRD 378

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 379 IELYYSTQIDEMPMNVADL 397


>gi|193606171|ref|XP_001946134.1| PREDICTED: ATP-dependent RNA helicase vasa, isoform A-like
           [Acyrthosiphon pisum]
          Length = 641

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/358 (36%), Positives = 203/358 (56%), Gaps = 15/358 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + GL   ++  + +  Y  PTPIQ   IP+++   D+   AQTG+GKTA+FVLP+L  
Sbjct: 224 FKESGLCEVLLSNLTECNYGNPTPIQKYAIPIIMNGKDMIASAQTGSGKTAAFVLPILNS 283

Query: 63  LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           L    + +        P+ LIL PTRELA+Q++    K     ++    L GG     Q 
Sbjct: 284 LISEPSELVFDYNHCEPQCLILSPTRELASQISSFAFKLSNGTSIRCRALYGGTAVYHQR 343

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI----TS 172
           +K+  G  +++ TPGR++D  NRG +  +++  +V+DEADRMLDMGF P IQ I    T 
Sbjct: 344 EKILSGVHIIVATPGRLIDFVNRGLITFSSLRFIVLDEADRMLDMGFTPAIQCIFSDNTM 403

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIE--VNTPSSTAETIEHCFVATYAQYSK 230
           +    R TL+FSAT+  ++Q++++++L+ P  I   V       + +   FV    ++SK
Sbjct: 404 VSSAERSTLMFSATLPIDVQQIAKSYLK-PDYISVAVGEVGGACKDVTQTFVEV-NKFSK 461

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K  L+  L ++ D  +  I+F  QK+    +   L +  +   +IHG+ +Q  R K L +
Sbjct: 462 KNELVALLNETND-CQGTIVFVEQKRQADFIAAFLSELNYPTTSIHGDREQPEREKALRD 520

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           FK   ++++VA+ +AARGLDI  V  V NFD+P   E Y+HRIGRTGR G  G+A + 
Sbjct: 521 FKTKKMKVLVATAVAARGLDIMGVTTVVNFDLPKTIEEYVHRIGRTGRLGNSGRAVSF 578


>gi|237845101|ref|XP_002371848.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|211969512|gb|EEB04708.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|221501473|gb|EEE27248.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
          Length = 657

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 203/379 (53%), Gaps = 21/379 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     ++  + + G   PT IQ++ IP +LQ  D+ GIA TG+GKT  F LPM  
Sbjct: 209 NFKDMRFPQPILKGLQERGISYPTQIQMQGIPAILQGRDIIGIAFTGSGKTLVFSLPM-- 266

Query: 62  ILEKGRARVRMPR-------TLILEPTRELAAQVADNFEKYGKNYN------LTVALLIG 108
           I+    + +R P         L++ P+RELA+Q  D    + K         L    +IG
Sbjct: 267 IMGALESEIRSPYLPGEGPFGLVVCPSRELASQTNDVCSFFCKKLEDGGYPALRCVCIIG 326

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G     Q K++ +G   ++ TPGR+ D  N+ +L +   E L  DEADRM+DMGF   ++
Sbjct: 327 GCSAVEQAKEVRQGVHCIVATPGRLTDMLNKRRLALQQCEYLCFDEADRMVDMGFEEEVR 386

Query: 169 NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
           N+       RQTLLFSATM  ++Q+ +++ L +P  + VN   + A  ++      Y + 
Sbjct: 387 NVLDSFGHQRQTLLFSATMPRKIQEFAKSALIDP--LVVNVGRAGAANLDVVQEVEYVKQ 444

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
             K   L   LQ   T    +IFC  KK+V ++   L  +G    A+HG + Q  R + +
Sbjct: 445 ENKLPYLLHCLQK--TAPPVLIFCENKKDVDDIQEYLLLKGVDAAAVHGGLAQEERSEAV 502

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             F+EG   ++V +D+A++GLD P + HV NFD+P   ENY+HRIGRTGR GR G A T 
Sbjct: 503 RAFREGRKDVLVGTDVASKGLDFPAIQHVINFDMPKEIENYVHRIGRTGRCGRTGVATTF 562

Query: 349 VAK--EDIKHIDAIEKLIE 365
           V K  E+   +D    LIE
Sbjct: 563 VNKNQEETVLLDLKALLIE 581


>gi|182439289|ref|YP_001827008.1| putative DEAD-box RNA helicase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178467805|dbj|BAG22325.1| putative DEAD-box RNA helicase [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 537

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 124/357 (34%), Positives = 188/357 (52%), Gaps = 8/357 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL + P ++  +   G  +P PIQ  T+P  L   D+ G  +TG+GKT +F L +L  
Sbjct: 78  FADLDMPPGLLKTLAAQGVTEPFPIQGATLPNSLAGRDILGRGRTGSGKTLAFGLALLAR 137

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               R   R P  ++L PTRELA QV D    Y    NL +A ++GG+    Q+  L RG
Sbjct: 138 TAGRRGEPRAPLAMVLVPTRELAQQVTDALTPYATAVNLRLATVVGGMSITKQSATLRRG 197

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+VL+ TPGR+ D   RG   ++ + I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 198 AEVLVATPGRLKDLIERGDCRLDEVSITVLDEADQMADMGFMPQVVALLKQVEADGQRML 257

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++ + FL +P    V+  +    T+EH  +    +  KK       + ++
Sbjct: 258 FSATLDKNIDRLVKMFLTDPVVHSVDPSAGAVTTMEHHVLHVLDETDKKA------VATK 311

Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              + G  I+F + K+        L   G    A+HG   Q  R + L  FK G +  +V
Sbjct: 312 IAAREGRVIMFVDTKRAADRFAKRLLASGVRAAALHGGRSQPQRNRTLDQFKNGQVTALV 371

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           A+++AARG+ + D+  V N D P   ++Y+HR GRT RAG  G   TLV  E+ + +
Sbjct: 372 ATNVAARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPEEKREM 428


>gi|145348205|ref|XP_001418546.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578775|gb|ABO96839.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 546

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 129/367 (35%), Positives = 206/367 (56%), Gaps = 3/367 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + + P V  AV   GY  PTPIQ K IP  L+  DV  +A+TG+GKTA+F++P+L+ 
Sbjct: 87  FESMDILPDVFRAVKRKGYRVPTPIQRKAIPPALEGRDVVAMARTGSGKTAAFLIPVLSK 146

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +    R +IL PTRELA Q     ++  K  +L VA L+GG   EAQ   L   
Sbjct: 147 LRTHSLKA-GARCVILAPTRELALQTFKFAKELAKFTDLRVAALVGGDSMEAQFADLSNN 205

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV++ TPGR+L H +  K   +  +  +V+DEADR+L+MGF   ++ I + V   RQTL
Sbjct: 206 PDVIVATPGRLLHHIDEVKAFTLRTVCHVVLDEADRLLEMGFADQLKQIMNSVADVRQTL 265

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L +     L+ P+ + ++     +  +   FV   +   K  ALL  L + 
Sbjct: 266 LFSATLPSALAEFVRVGLREPEVVRLDAEMKISSDLRMSFVLMRSD-EKVAALLYMLREV 324

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  ++F + + +V  L + LE +G  V +I+G++D  +R   L  F+     ++V 
Sbjct: 325 IPKRQQTVVFASTRHHVEWLQNVLEFEGVKVSSIYGSMDMMARKMALGRFRAKKADVLVV 384

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP + +V N+D P + + ++HR+GR  RAGR G A + + KE++  +  + 
Sbjct: 385 TDVAARGIDIPLLDNVINYDFPAKGKLFVHRVGRVARAGRTGNAHSFLVKEELGFLVDLH 444

Query: 362 KLIEKKV 368
             + +K+
Sbjct: 445 LFLGRKI 451


>gi|254228849|ref|ZP_04922271.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|151938526|gb|EDN57362.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
          Length = 310

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 121/301 (40%), Positives = 178/301 (59%), Gaps = 5/301 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P+VV A+ + GY K TPIQ K IP+  + HD+   AQTGTGKTA+F LPM+
Sbjct: 1   MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMI 60

Query: 61  T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +L+  R+  R   R LIL PTRELA Q+ADN + Y K  NL+VA + GG    +Q   
Sbjct: 61  QQLLDSNRSASRKTARALILAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQVAA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H  +G + + ++E LV DEADR+LDMGFI  ++ I   V    
Sbjct: 121 LENGVDILVATPGRLEEHIEQGNVSVAHLEFLVFDEADRILDMGFIHAVRKIMLDVDTDP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L  ++++ L+ PKRIEV   ++TA+T+ H          +K  LL +L
Sbjct: 181 QIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAQTVAHVLYPV--DQERKTELLSEL 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   K  ++F N K+    +   L+  G      HG+  Q +R + L  FK G  ++
Sbjct: 239 I-GRKNWKQVLVFVNYKETANEVVKELKLDGIKAVVCHGDRAQSARRRALEEFKSGKARV 297

Query: 299 M 299
           M
Sbjct: 298 M 298


>gi|281206116|gb|EFA80305.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 858

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 201/379 (53%), Gaps = 38/379 (10%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK-- 65
           L  +++ A+   GY KP+PIQ++ IP+ L   DV GIA+TG+GKTA+FV+PML  + K  
Sbjct: 439 LPREILEAIAKMGYEKPSPIQMQAIPIALWGRDVLGIAETGSGKTAAFVIPMLVYISKQP 498

Query: 66  ---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                     P  L++ PTRELA Q+      +  ++      L+GG P E Q  +L +G
Sbjct: 499 RLNKETEADGPYALVMAPTRELALQIEKEARNFANHFGFRCVALVGGQPIEDQIFQLSKG 558

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177
            +++I TPGR+ D   +  L++N    +V+DEAD M+DMGF P + ++   +P +     
Sbjct: 559 CEIVIATPGRLNDCLEKRYLVLNQCNYVVLDEADLMIDMGFEPQVVSVLDAMPSSFLKSE 618

Query: 178 ----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
                           R T+L+SATM  +++++S  +L+    + +       + I+   
Sbjct: 619 NEEEAEKQETDANRIYRTTILYSATMPPKVERLSRKYLRRAVHVIIGEAGKAVDRIKQNV 678

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
           V   + + K+  L+       D + NG     IIF N+KK+   +   + + G +  ++H
Sbjct: 679 VFVKSDHDKRVQLM-------DLLSNGPPPPIIIFVNKKKHCEIISEIVSECGMTSTSLH 731

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
            +  Q  R   L  FK     +++A+D+A+RG+ +  V HV N+D+PN  E+Y HRIGRT
Sbjct: 732 SSRSQDQREMALDGFKRRRYNVLIATDVASRGIHVEGVTHVINYDMPNNIEDYTHRIGRT 791

Query: 337 GRAGRHGKAFTLVAKEDIK 355
           GRAG  G A + +  +D +
Sbjct: 792 GRAGMEGMASSFLTDKDTE 810


>gi|157128260|ref|XP_001661370.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882257|gb|EAT46482.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 639

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 125/356 (35%), Positives = 203/356 (57%), Gaps = 13/356 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F ++G   ++      A +  PTPIQ +  P+ +   D+ GIA+TG+GKT S++LP L
Sbjct: 87  LTFEEVGFPAEIADEWRYAEFTTPTPIQSQGWPIAMSGRDMVGIAKTGSGKTLSYLLPAL 146

Query: 61  TILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             +++ ++R+R    P  LIL PTRELA Q+    + +G+   +    L GG     Q  
Sbjct: 147 MHIDQ-QSRLRRGDGPIALILAPTRELAQQIKQVTDDFGRAMKIKNTCLFGGGAKRQQGD 205

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G +++I TPGR++D  +     +     LV+DEADRMLDMGF P I+ I   +   
Sbjct: 206 DLKYGVEIVIATPGRLIDFLSSEHTNLRRCSYLVLDEADRMLDMGFEPQIRAIIEQIRPD 265

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKC 232
            QTL++SAT  D + ++ +++L++  +I V +    A     + I+ C    + + +K  
Sbjct: 266 HQTLMWSATWPDAVSRLVKDYLKDYIQINVGSLKLAANHNILQIIDVC--QEHEKEAKLS 323

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL++++  ++     IIF   KK V ++   + + G+    IHG+  QR R   L++F+
Sbjct: 324 ILLREIMAEKEC--KTIIFIETKKRVDDITRKVLRDGWPAMCIHGDKSQREREYTLNSFR 381

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            G   +++A+D+AARGLD+ DV  V NFD P  +E+YIHRIGRTGR+   G A+T 
Sbjct: 382 SGKNPILIATDVAARGLDVDDVKFVINFDYPTTSEDYIHRIGRTGRSNNTGTAYTF 437


>gi|302533878|ref|ZP_07286220.1| DEAD-box RNA helicase [Streptomyces sp. C]
 gi|302442773|gb|EFL14589.1| DEAD-box RNA helicase [Streptomyces sp. C]
          Length = 465

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 122/349 (34%), Positives = 188/349 (53%), Gaps = 8/349 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ +   ++  +   G  +P PIQ  T+P  L   D+ G  +TG+GKT +F L +L  
Sbjct: 58  FEDMDMPEALLKTLAAQGVTEPFPIQAATLPNSLAGRDLLGRGRTGSGKTLAFGLALLAR 117

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA+   P  ++L PTRELA QV D+   Y  + NL +A ++GG+    Q   L RG
Sbjct: 118 TAGRRAQPTAPLAMVLVPTRELAQQVTDSLSPYATSVNLRIATVVGGMSINRQAGALRRG 177

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+VL+ TPGR+ D  +RG   ++ + I V+DEAD+M DMGF+P +  +   V    QT+L
Sbjct: 178 AEVLVATPGRLKDLIDRGDADLSQVSITVLDEADQMTDMGFMPQVTALLKQVAPEGQTML 237

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + K+ + FL +P    V+  +    T+EH  +    +  KK       + ++
Sbjct: 238 FSATLDKNIDKLVKMFLDDPVAFSVDPSAGAVSTMEHHVLYVMDETDKKA------VATR 291

Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++G  I+F + K+ V  +   L   G     +HG   Q  R + L  FK G +  ++
Sbjct: 292 IAARDGRVIMFVDTKRGVDRMVKRLLADGVRASGLHGGRSQPQRNRTLDWFKTGEVTALI 351

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           A+++AARG+ I D+  V N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 352 ATNVAARGIHIDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLV 400


>gi|296272832|ref|YP_003655463.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296097006|gb|ADG92956.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 452

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 133/357 (37%), Positives = 206/357 (57%), Gaps = 10/357 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           L +  K+   ++  GY   T IQ +++PL+L+  DV   A+TG+GKTA+F + +L  L+ 
Sbjct: 7   LNIDEKLKENLISLGYETLTKIQEESLPLILEGKDVIAKAKTGSGKTAAFGIGLLNKLDV 66

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGAD 124
            + + +    L+L PTRELA QVA    +  +  +N+ +  L GG+P   Q   L  GA 
Sbjct: 67  KKFKTQ---CLVLCPTRELADQVAVELRRIARYKHNIKILTLCGGVPSSRQTHSLTHGAH 123

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           V++ TPGR+L H     L   +I+ LV+DEADRMLDMGF+  I+ + S +P  RQTLLFS
Sbjct: 124 VIVGTPGRVLFHLREQNLNPESIDTLVLDEADRMLDMGFLEDIEKVISFIPKQRQTLLFS 183

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT  + ++++S+  L +P    V+T   T  TI   F+ T    S+K ++L +L  +   
Sbjct: 184 ATYDENIKELSKGILVDPIFKSVDT-VHTESTIREEFIKT----SRKDSVLLKLFSTYKP 238

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             + IIFCN K     L   L   G+    +H + +Q++R +I++ F   +  +++A+D+
Sbjct: 239 -SSVIIFCNTKIKCDELDTYLYDMGYDPLVLHSDFEQKTRDEIITLFSNKSYPILIATDV 297

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           A+RGLDI DV  V N+D+ N    Y HRIGRT RAG+ G A TL    D   ++ ++
Sbjct: 298 ASRGLDIDDVEMVINYDMANDTNVYTHRIGRTARAGKSGVALTLYNDYDEDKVEELQ 354


>gi|317485296|ref|ZP_07944176.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
 gi|316923422|gb|EFV44628.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
          Length = 550

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 126/350 (36%), Positives = 201/350 (57%), Gaps = 9/350 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +  ADL    +  CA   AG+    P+Q + +P +L+  D+   ++TG+GKT +++LP++
Sbjct: 46  VSLADLPQLLQTACA--KAGWNSLMPVQSRALPYLLEGRDLMVQSRTGSGKTGTYLLPLM 103

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L      V+    LIL PTRELA QV    +   K    TVA + GG+ +  Q   L 
Sbjct: 104 ARLNPAMPAVQ---ALILVPTRELAVQVEQEAKTLFKGSGFTVAAVYGGVGYGKQMDALR 160

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR-Q 179
           +G  V++ TPGR+LDH  R  L +++I  L+ DEADRML +GF P ++ I   +P T   
Sbjct: 161 QGVSVVVGTPGRVLDHLLRRTLNLDHISALIFDEADRMLSIGFYPDMKEIQRYLPETSIH 220

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT    + K++  FL +P+ + ++T       ++H +    +   +K   L ++L
Sbjct: 221 AMLFSATYPPHVLKLAGEFLTDPQMLSLSTTQIHVAEVQHLYCECKSM--EKDRTLIKIL 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++   + IIFCN K  V  +   L+  GF+   +  ++ Q  R  +LS  ++GTI+ +
Sbjct: 279 EVENP-ASAIIFCNTKATVHFVTAVLQGFGFNADELSADLSQSRREDVLSRLRKGTIRFL 337

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           VA+D+AARG+DIP++ HVF ++ P+  E+YIHR GRTGRAG  G   +LV
Sbjct: 338 VATDVAARGIDIPELSHVFLYEPPDDRESYIHRAGRTGRAGAAGVVISLV 387


>gi|270000966|gb|EEZ97413.1| hypothetical protein TcasGA2_TC011242 [Tribolium castaneum]
          Length = 761

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 123/355 (34%), Positives = 205/355 (57%), Gaps = 2/355 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V+  +   GY +PTPIQ KTIPLVL+  DV  +A+TG+GKTA F++PM   
Sbjct: 35  FQCMGLSYNVLKGITKRGYQQPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMFEK 94

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K R+     R LIL PTRELA Q     ++ G+   L  A+++GG   + Q   +   
Sbjct: 95  L-KIRSAKAGARALILSPTRELALQTLKFIKELGRFTGLKSAVILGGDSMDDQFSAIHGN 153

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR L      +L +N++E +V DEADR+ +MG    +  I + +P  RQT+L
Sbjct: 154 PDIIVATPGRFLHVCIEMELKLNSVEYVVFDEADRLFEMGLGEQLTEIVNRLPDARQTVL 213

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + ++  L +P  + ++  S   E ++  ++    +  +  ALL  L    
Sbjct: 214 FSATLPKVLVEFAKAGLNDPVLLRLDVESKIPEELQLWYIIVRPE-ERLAALLVLLKTHI 272

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D  +  ++F   + +V  +   L++ G S   I+ N+D  +R    + F  G ++++V +
Sbjct: 273 DNKQQTVVFAATRHHVEYIHMILDRVGVSNTYIYSNLDPSARKINAAKFSTGKVKVLVVT 332

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           D+AARG+DIP + +V N++ P +++ ++HR+GR  RAGR G A++LV  ++  ++
Sbjct: 333 DVAARGIDIPQLDNVINYNFPAKSKLFVHRVGRCARAGRSGTAYSLVTPDEYPYL 387


>gi|303320765|ref|XP_003070377.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240110073|gb|EER28232.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28, putative
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 827

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 125/384 (32%), Positives = 204/384 (53%), Gaps = 35/384 (9%)

Query: 3   FADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           + + GL PK +  ++D  GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 389 WGESGL-PKRLLEIIDKVGYKDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 447

Query: 62  IL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +       E    +   P  +IL PTRELA Q+ +   K+       V  ++GG   E 
Sbjct: 448 YIAELPRLDEFEWRKSDGPYAIILAPTRELAQQIENEARKFCNPLGFNVVSIVGGHSLEE 507

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q+  L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 508 QSFSLRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 567

Query: 175 PFT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNT 209
           P +                         RQT++++ATM   +++++  +L+ P  + +  
Sbjct: 568 PVSNEKPDTEEAEDARAMSQHLGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 627

Query: 210 PSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269
                +T+E   V   +   K+   L  +L S +     I+F N K+N   +   +++ G
Sbjct: 628 IGEAVDTVEQ-RVEFISGEDKRKKRLADILASGEFRPPIIVFVNIKRNCDAVARDIKQMG 686

Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329
           +S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+ DV  V NF++    E+Y
Sbjct: 687 YSSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVSDVSLVVNFNMATNIESY 746

Query: 330 IHRIGRTGRAGRHGKAFTLVAKED 353
            HRIGRTGRAG+ G A T +  ED
Sbjct: 747 THRIGRTGRAGKSGVAITFLGNED 770


>gi|121719103|ref|XP_001276289.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus clavatus NRRL 1]
 gi|142985525|sp|A1C595|FAL1_ASPCL RecName: Full=ATP-dependent RNA helicase fal1
 gi|119404487|gb|EAW14863.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus clavatus NRRL 1]
          Length = 399

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 121/379 (31%), Positives = 205/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L +
Sbjct: 27  FEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQV 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 87  IDTA---VRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 144 QHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVV 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P R+ V     T E I+  F+A   +   +   C L   L 
Sbjct: 204 VSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTL- 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++
Sbjct: 263 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  
Sbjct: 319 ISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRD 378

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 379 IELYYSTQIDEMPMNVADL 397


>gi|157130314|ref|XP_001661885.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108871945|gb|EAT36170.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 619

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 141/389 (36%), Positives = 212/389 (54%), Gaps = 30/389 (7%)

Query: 10  PKVVCAVLDAGYV-KPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
           PK + A L+   + KP+PIQ++ IP VL   D+ GIA TG+GKT  FVLP++    +   
Sbjct: 188 PKAILAALEKRNIRKPSPIQVQGIPAVLSGRDLIGIAFTGSGKTLVFVLPIVMFSLEQEL 247

Query: 69  RVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLT------VALLIGGIPFEAQNK 117
           R+       P  LI+ P+RELA Q  D  + Y ++  ++       AL IGG+P      
Sbjct: 248 RLPFISKEGPYGLIICPSRELAKQTHDIIQYYCQHLQMSGMPEIRSALAIGGVPVNDALA 307

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +++G  +++ TPGR++D  ++  L ++    L +DEADRM+D GF   I+ I S     
Sbjct: 308 TIQQGCHIMVATPGRLMDMLDKKLLKLDVCRYLCMDEADRMIDAGFEEDIRTIFSYFKGQ 367

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM  ++Q  +++ L  P  + +N   + A ++       Y +   K   L  
Sbjct: 368 RQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASMNVTQDVEYVKQEAKVVYLLD 425

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            LQ   T    +IF  +K++V  +   L  +G    AIHG  DQ  R + +  F+     
Sbjct: 426 CLQK--TPPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERYRSVEGFRNQEKD 483

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE----- 352
           ++VA+D+A++GLD PDV HV N+D+P+  ENY+HRIGRTGR+G  G A T + K      
Sbjct: 484 VLVATDVASKGLDFPDVQHVINYDMPDDIENYVHRIGRTGRSGSKGLATTFINKATEQFV 543

Query: 353 --DIKHIDAIEKLIE--KKVDWLNGDLSS 377
             D+KH+     LIE  +KV    G+L S
Sbjct: 544 LLDLKHL-----LIEAKQKVPPFLGELCS 567


>gi|312067818|ref|XP_003136922.1| Ddx49-A-prov protein [Loa loa]
 gi|307767911|gb|EFO27145.1| Ddx49-A-prov protein [Loa loa]
          Length = 478

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 205/379 (54%), Gaps = 18/379 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGLS  +   V       PTP+Q+  IP +L   DV G A+TGTGKT +F LP+L  
Sbjct: 45  FSELGLSKWLCNQVRHLAMNTPTPVQVNCIPHILAGSDVLGCAKTGTGKTLAFGLPILHE 104

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L      +     L+L PTRELA Q+ D F   G    L + +++GG    AQ   L R 
Sbjct: 105 LAIDPYGIC---ALVLTPTRELAIQIGDQFAALGTPIGLKIGIVVGGKDRVAQGNDLARR 161

Query: 123 ADVLICTPGRILDHF-----NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             +++ TPGR+ DH      N GKL    +  LV+DEADR+LD  +   ++ I + +P  
Sbjct: 162 PHIVVATPGRLADHLESDSENTGKLF-KKLRFLVLDEADRLLDGQYSIELKTILNFLPKQ 220

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT+T  L ++ +  ++ P   E  +  +T + +E  +V       K   L+  
Sbjct: 221 RQTLLFSATITSALSQLHQVSVKKPYFFEDKSEIATVDKLEQKYVLCPCAV-KDAYLVYV 279

Query: 238 LLQSQDTMKNGIIF-----CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           +    +   + +I      C + + +  + H L   GF V ++H  I Q+ R   L+ F+
Sbjct: 280 VKNFHEKHPDSLILIFSHTCRECQALAIMFHGL---GFQVGSLHSQISQQERTSSLTKFR 336

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G I++++ +D+A+RGLDIP V  V N +VP   + YIHR+GR+ RAGR G A   V + 
Sbjct: 337 SGRIKILICTDVASRGLDIPHVDLVINHNVPQNPKTYIHRVGRSARAGRFGCALLFVTQY 396

Query: 353 DIKHIDAIEKLIEKKVDWL 371
           DI  +  IEK+I KK+D L
Sbjct: 397 DIFLVQEIEKVIGKKLDKL 415


>gi|116491279|ref|YP_810823.1| superfamily II DNA/RNA helicase [Oenococcus oeni PSU-1]
 gi|116092004|gb|ABJ57158.1| Superfamily II DNA and RNA helicase [Oenococcus oeni PSU-1]
          Length = 454

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/370 (35%), Positives = 205/370 (55%), Gaps = 15/370 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L  ++V A+    + KPT +Q + IP ++   DV G +QTG+GKT +F+LP+   
Sbjct: 5   FGQFNLKTEIVKAIDGISFNKPTKVQKRIIPPIIAGRDVVGQSQTGSGKTHAFLLPIFNG 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--------NLTVALLIGGIPFEA 114
           L+     +   + +I  P+RELA Q+   F  + K+         +L +A  IGG     
Sbjct: 65  LDPS---LEETQAVITSPSRELAEQLYQAFRDFQKSLAAIDENFADLRIADYIGGTDRNK 121

Query: 115 QNKKLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           Q ++LER    ++I TPGR+ D  ++  LL+N     V+DEAD  LDMGF+  +  I S 
Sbjct: 122 QIRQLERKQPQIVIGTPGRLKDFLSKNFLLVNQNRFFVVDEADMALDMGFLEDVDTIASA 181

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P   Q L+FSAT+ D+L    + +++NP   E+   +  A+TI++  +AT ++   K  
Sbjct: 182 MPDNLQMLVFSATIPDKLTPFLKRYMKNPLIEEIPVSTVVADTIDNYLLATKSK--DKNE 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           ++  LL  +++    ++F N K+ V  L H L+ QG     +HG I+ R R + +   K+
Sbjct: 240 VIFDLLTRKESYLT-LVFANTKERVHELAHFLDSQGLKAAEVHGGIEPRERRRTMKRIKK 298

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
              Q +VA+DLAARGLDI  V  V N D+P   E +IHR+GRTGR G  G A TL   ++
Sbjct: 299 QEFQYVVATDLAARGLDIQGVSEVINDDIPTDLEFFIHRVGRTGRNGLPGTAITLYGPDE 358

Query: 354 IKHIDAIEKL 363
              ++ +EKL
Sbjct: 359 EDKVEELEKL 368


>gi|315182351|gb|ADT89264.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           furnissii NCTC 11218]
          Length = 442

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 203/373 (54%), Gaps = 5/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + + T IQ + IP+ +   D+   ++TG+GKT +F+LPML
Sbjct: 1   MQFKDLGLDNRLLKTLAHFDFKQATQIQQQAIPVAMAGKDLLASSKTGSGKTLAFLLPML 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   R PR +IL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 61  HKALKTKALSARDPRGVILVPTRELAKQVYGELRTMLSGLSYTATLITGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            RG   ++ TPGR+ DH     L +  +E L++DEADRMLD+GF P +++I +     R 
Sbjct: 121 RRGPKFIVATPGRLADHLEHRSLFLEGLETLILDEADRMLDLGFAPQLRHIHNAAKHRRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTLLFSAT+   ++  ++   L + K I V   +   + I   F         K ALL +
Sbjct: 181 QTLLFSATLDHAQVNDIAYEMLNDAKHIAVGGSNEQHKDITQRFYLC-DHLDHKEALLDR 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L   D  +  IIF   + +   L   L ++     A+ G+++Q  R  I+S F+    +
Sbjct: 240 VLDDAD-YRQVIIFTATRDDTERLTAKLNERKLKAVALSGSLNQVQRNTIMSQFERAVFK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLDI +V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D    
Sbjct: 299 ILVTTDVASRGLDIANVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSF 358

Query: 358 DAIEKLIEKKVDW 370
             +E  +++ + +
Sbjct: 359 KRVEAYLKQDIQF 371


>gi|225684976|gb|EEH23260.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb03]
 gi|226294288|gb|EEH49708.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb18]
          Length = 399

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L +
Sbjct: 27  FEDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQV 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     +R  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 87  ID---TVLRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDHG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 144 QHVVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVV 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 204 VSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTL- 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++
Sbjct: 263 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 319 ISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRD 378

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 379 IELYYSTQIDEMPMNVADL 397


>gi|307548813|dbj|BAJ19133.1| vasa [Misgurnus anguillicaudatus]
          Length = 644

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 145/426 (34%), Positives = 230/426 (53%), Gaps = 31/426 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL   +   V+ +GY KPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 201 MTFDEAGLCESLNKNVVKSGYTKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 260

Query: 61  T-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G A      V+ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 261 QRLMTDGVAASKFSEVQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGTNTGY 320

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +++ +G +VL  TPGR+LD   RGK+ ++ +  LV+DEADRMLDMGF P ++ + +  
Sbjct: 321 TIREVLKGCNVLCGTPGRLLDIIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRKLVASP 380

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTLLFSAT  +++Q+++ +FL+ +   + V         +E   +    Q+S
Sbjct: 381 GMPSKEDRQTLLFSATYPEDIQRLAADFLKVDYIFLAVGVVGGACSDVEQSIIQV-TQFS 439

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL+ LL++    +  ++F   K++   +   L ++     +IHG+ +QR R K LS
Sbjct: 440 KREQLLE-LLRTTGNERT-MVFVGTKRSADFIATFLCQEKIPTTSIHGDREQREREKALS 497

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G   ++VA+ +AARGLDI  V HV NFD+P+  + Y+HRIGRTGR G  G+A +  
Sbjct: 498 DFRTGQCPVLVATSVAARGLDIEHVQHVVNFDLPSSIDEYVHRIGRTGRCGNIGRAVSFF 557

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             E          L    V  L+G    +   LE+I  + H            +TGF+ R
Sbjct: 558 DPE------PDTPLARSLVKVLSGAQQEVPKWLEEIAFSAHG-----------TTGFNPR 600

Query: 410 KKNYSS 415
            K ++S
Sbjct: 601 GKVFAS 606


>gi|116208202|ref|XP_001229910.1| hypothetical protein CHGG_03394 [Chaetomium globosum CBS 148.51]
 gi|88183991|gb|EAQ91459.1| hypothetical protein CHGG_03394 [Chaetomium globosum CBS 148.51]
          Length = 1453

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 138/384 (35%), Positives = 202/384 (52%), Gaps = 21/384 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  ++  +   G+ KPTPIQ KTIP+ L   DV G A TG+GKTA+FV+P+L  
Sbjct: 278 FQGMSLSRPILRGLTSVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTAAFVVPILER 337

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R ++L PTRELA Q      K   + ++   L +GG+  + Q  +L   
Sbjct: 338 LLYRPKKVPTTRVVVLTPTRELAIQCHSVATKLASHTDIKFCLAVGGLSLKVQEGELRLR 397

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     +  +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 398 PDVVIATPGRFIDHMRNSASFAVETVEILVLDEADRMLEDGFADELNEILTTLPKSRQTM 457

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMT  + K+    L  P RI V++   TA T+   FV     +  K+   L   LQ
Sbjct: 458 LFSATMTSTVDKLIRVGLNKPARIMVDSQKQTAVTLAQEFVRLRPGREEKRMGYLGPYLQ 517

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK--ILSNFKEGTIQL 298
                 +  +   ++    +  H           + G  + R+  K    S F++G +  
Sbjct: 518 DPVHRTSHYLLQAEEDCSPDPDH---------LRLAGAFEHRAPWKHEPGSAFRDGKVNY 568

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+DLA+RGLDI  +  V N++ P   E Y+HR+GRT RAGR G A TL A+ D K + 
Sbjct: 569 LLATDLASRGLDIKGIDTVINYEAPQSLEIYVHRVGRTARAGRSGVAITLAAEPDRKVVK 628

Query: 359 AI--------EKLIEKKVDWLNGD 374
           A          K+I + +D  + D
Sbjct: 629 AAVRAGKAQGAKIISRVIDAADAD 652


>gi|84494425|ref|ZP_00993544.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
 gi|84383918|gb|EAP99798.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
          Length = 774

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 124/348 (35%), Positives = 189/348 (54%), Gaps = 6/348 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+  ++V  +   G   P PIQ  TIP  L   DV G  QTG+GKT +F LP +T 
Sbjct: 325 FAKLGVDARLVERLARDGITSPFPIQEATIPDALAGRDVLGRGQTGSGKTLAFGLPTITR 384

Query: 63  LEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G R   + PR LI+ PTRELA QV+D  E       L   L+ GG+ +E Q + L+ 
Sbjct: 385 LVDGTRPAPKRPRALIMVPTRELAMQVSDALEPLVHVTGLRHKLVAGGLSYEPQVRALKS 444

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+L+ TPGR+ D   RG   +++++++++DEAD M DMGF+P +  I   +P   Q L
Sbjct: 445 GIDILVATPGRLNDLIERGACELDDVQVVILDEADHMADMGFMPEVTAIMDKIPAGGQRL 504

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   + K+ + +L +P         ++  T+ H  +       K+   L   L +
Sbjct: 505 LFSATLDKGIDKLVDRYLSDPVTHSTEDAQASVTTMSHHIMLIDPNNKKQ---LTAELAA 561

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     ++F   +     +   L ++G    AIHG + Q  R + L  F++G++ ++VA
Sbjct: 562 RDGRT--VVFVRTQLGADRIARELREKGVLAAAIHGGLSQNLRNRALGAFRDGSLPVLVA 619

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +D+AARG+ + D+G V   D P   ++Y+HR GRT RAG  G   T  
Sbjct: 620 TDVAARGIHVDDIGLVLQADPPADHKDYLHRAGRTARAGEKGTVVTFA 667


>gi|84621697|ref|YP_449069.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84365637|dbj|BAE66795.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 429

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 133/366 (36%), Positives = 193/366 (52%), Gaps = 10/366 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           D   L L P    A+  AG    TPIQ+  IP +L   D+   AQTG+GKT ++ LP+L 
Sbjct: 6   DLLSLQLPPLFESALARAGVRTLTPIQVAMIPPMLAARDLIVTAQTGSGKTLAYALPLLQ 65

Query: 62  ILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQN 116
             ++ +A  ++PR L   IL PTREL AQVA             L +    GG     Q 
Sbjct: 66  --QRLQAPEQVPRVLGGLILVPTRELVAQVAQTLLSLAAALPRRLKIVAATGGEAINPQL 123

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GAD++I TPGR+LD      L ++ +  LV+DEADR+LD+GF   I  I +L+P 
Sbjct: 124 MALRGGADIVIATPGRLLDLVTHNALRLSQVRTLVLDEADRLLDLGFGAEIDRILALLPA 183

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ++L SAT    +  +++  L++P RI ++     A  I    +A  A   ++  LL+
Sbjct: 184 QRQSVLVSATFPPAIASLAKRRLRDPLRITIDATPEHAPAIAQRAIAVDA--GQRTQLLR 241

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LLQ +      ++F   +     +   L K G     +HG + Q  R + L  FK+  +
Sbjct: 242 HLLQ-EHAWPQLLVFVASRHTADKVAEKLSKTGIEALPLHGELSQGRRERTLRAFKQADV 300

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+DLAARG+DI  +  V N+D+P    +Y HRIGRT RAG  G+A + V  E  + 
Sbjct: 301 QVLVATDLAARGIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGEAISFVTAERAQQ 360

Query: 357 IDAIEK 362
              IEK
Sbjct: 361 WRLIEK 366


>gi|71906768|ref|YP_284355.1| ATP-dependent RNA helicase DbpA [Dechloromonas aromatica RCB]
 gi|71846389|gb|AAZ45885.1| ATP-dependent RNA helicase DbpA [Dechloromonas aromatica RCB]
          Length = 466

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 135/390 (34%), Positives = 212/390 (54%), Gaps = 14/390 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LSP ++  +    Y+  TPIQ  ++PL L  +D+   A+TG+GKTA+F L +L  
Sbjct: 11  FDTLPLSPAMLANLAQLEYLSMTPIQAASLPLALAGNDLIAQAKTGSGKTAAFGLALLNR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           L   R  V+    ++L PTRELA QV     +  +   N+ V  L+GG     Q   LE+
Sbjct: 71  LNTSRFAVQ---AMVLCPTRELADQVTQEIRRLARFEENIKVLSLVGGSTLRNQANSLEK 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGRI+DH  RG L ++ +  LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 128 GVHIVVGTPGRIMDHMERGYLKLDELNTLVLDEADRMLDMGFHDDIAYVAKRCPAQRQTL 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + +  ++  FL+ PK +++       +  +  +     +  ++   + +LL+ 
Sbjct: 188 LFSATYPEGIALLARQFLRQPKEVKLLELHEETKIRQRFY---EVKDDERLDAVVRLLKH 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   + FCN K+   +L + L   G     ++G+++QR R ++L  F   +  ++VA
Sbjct: 245 YRPVST-LAFCNTKQQCRDLVNVLRHAGIHALTLNGDLEQRERDQVLIQFANRSCSVLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E +IHRIGRTGR    G A +L +  D + +  I 
Sbjct: 304 TDVAARGLDIDQLEAVINVDVTPDPEIHIHRIGRTGRGDEEGWALSLCSSGDRRRVATIA 363

Query: 362 KLIEKKVDWLN------GDLSSLNPPLEKI 385
           ++++ K+D L+       D S L PP+  +
Sbjct: 364 EMMKCKLDVLDLKTVEVTDDSPLVPPMSTL 393


>gi|323355122|gb|EGA86952.1| Dbp3p [Saccharomyces cerevisiae VL3]
          Length = 537

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/342 (37%), Positives = 201/342 (58%), Gaps = 8/342 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           + KPTPIQ    P +L   DV G+A+TG+GKT +F +P ++ L   + + R  + L++ P
Sbjct: 132 FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKK-RGIQVLVISP 190

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TRELA+Q+ DN         +    + GG+P + Q  +L++ + V++ TPGR+LD    G
Sbjct: 191 TRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKK-SQVVVATPGRLLDLLQEG 249

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQTLLFSATMTDELQKVSENFL 199
            + ++ +  LV+DEADRML+ GF   I+NI      + RQTL+F+AT   E+++++  F+
Sbjct: 250 SVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFM 309

Query: 200 QNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG---IIFCNQK 255
            NP ++ + NT   TA       V       K+  LL+ L +     K     +IF   K
Sbjct: 310 NNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYK 369

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           K    +  +L+  G++V AIHG++ Q+ R + L+ FK G   L++A+D+AARGLDIP+V 
Sbjct: 370 KEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVK 429

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            V N   P   E+Y+HRIGRTGRAG+ G A TL  +++ KH+
Sbjct: 430 TVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQE-KHL 470


>gi|291616471|ref|YP_003519213.1| DbpA [Pantoea ananatis LMG 20103]
 gi|291151501|gb|ADD76085.1| DbpA [Pantoea ananatis LMG 20103]
          Length = 459

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 204/353 (57%), Gaps = 8/353 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY   TP+Q  T+P +L   DV   A+TG+GKTA+F + +L  ++    + +    LIL 
Sbjct: 22  GYTSMTPVQAATLPAILDGRDVRAQAKTGSGKTAAFGIGLLQHIDSAHFQTQ---ALILC 78

Query: 80  PTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QV++   +  +   N+ +  L GG P  AQ   L     +++ TPGRILDH  
Sbjct: 79  PTRELADQVSNVLRQLARFTRNIKILTLCGGQPMSAQRDSLVHAPHIVVGTPGRILDHIK 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           R  L + ++  LV+DEADRML+MGF   ++ I +  P +RQTLLFSAT  + +  +S+ F
Sbjct: 139 RETLKLESLRTLVLDEADRMLEMGFRDDMETIIAATPASRQTLLFSATWPEGIAALSQRF 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            +    + V    S    IE  F+   A + +K +LL  LL  +    + ++FCN K+  
Sbjct: 199 QREALSV-VTEEVSELPAIEQQFI--EASHGEKLSLLISLLSERQP-SSCVVFCNTKREC 254

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            ++  +L  +  S   +HG+++QR R ++L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 255 DDIAAALNARDISALPLHGDLEQRDRERVLIRFANGSGRVLVATDVAARGLDIKLLSLVV 314

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
           N+ +    E ++HRIGRT RAG  G A + VA +++    A+E  +++K+ W+
Sbjct: 315 NYQLAWDPEVHLHRIGRTARAGEQGAAVSFVAADEMARAHALEDFLQQKLPWV 367


>gi|168067781|ref|XP_001785785.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662575|gb|EDQ49411.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 395

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 202/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G+   ++  +   G+ KP+ IQ + +  ++   D    AQ+GTGKT+   L +  +
Sbjct: 24  FDQMGIREDLLRGIYAYGFEKPSAIQQRAVMPIISGRDAIAQAQSGTGKTSMIALTVCQM 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++      R  + LIL PTRELAAQ        G   N+     IGG       +KLE G
Sbjct: 84  IDIA---TREVQALILSPTRELAAQTEKVILAIGDFMNVQAHACIGGKSIGEDIRKLEYG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++L++DE+D ML  GF   I ++   +P   Q +L
Sbjct: 141 VHVVSGTPGRVYDMIKRRTLRTRSIKLLILDESDEMLSRGFKDQIYDVYRYLPPELQVVL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 201 VSATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 259

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   +    F+V A+HG++ Q+ R  I++ F+ GT +++
Sbjct: 260 ----TITQAVIFCNTKRKVDWLTEKMRSNNFTVSAMHGDMPQKERDAIMAEFRSGTTRVL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 316 ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRSDDIRILRD 375

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 376 IEQYYSTQIDEMPMNVADL 394


>gi|293348206|ref|XP_001059856.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 41-like [Rattus
           norvegicus]
          Length = 1348

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 132/361 (36%), Positives = 199/361 (55%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L   ++  +   G + PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 230 FKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 289

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 290 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALCIGGVS 349

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 350 LKEQMETMRHGVHIMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 409

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + +N   + A +++   V    +Y K+
Sbjct: 410 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKE 464

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 465 EAKMVYLLECLQKTPPPVLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 524

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 525 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 584

Query: 351 K 351
           K
Sbjct: 585 K 585


>gi|156406955|ref|XP_001641310.1| predicted protein [Nematostella vectensis]
 gi|156228448|gb|EDO49247.1| predicted protein [Nematostella vectensis]
          Length = 487

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 132/373 (35%), Positives = 206/373 (55%), Gaps = 22/373 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++ A+   G   PTPIQ++ +P VL   D+ GIA TG+GKT  F LP++  
Sbjct: 49  FKEMKFPRPILAALKKKGITHPTPIQVQGLPAVLTGRDMIGIAFTGSGKTLVFTLPIIMF 108

Query: 63  -LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNY------NLTVALLIGGIP 111
            LE+ +A    R   P  +I+ P+RELA Q  +    + +        +L   L IGG  
Sbjct: 109 SLEQEKAMPFQRNEGPYGMIVVPSRELARQTFEVITHFSRALEAHGFPSLRTNLCIGGSS 168

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q+  ++RG  +++ TPGR++D  ++  + ++    LV+DEADRM+DMGF   ++ I 
Sbjct: 169 IKEQSDAMKRGVHMVVATPGRLMDLLDKRIITLDVCRYLVLDEADRMIDMGFEEDVRTIF 228

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + VN   + A +++      Y +   K
Sbjct: 229 SYFKSQRQTLLFSATMPKKIQNFAKSALVKP--VTVNVGRAGAASLDVIQEVEYVKQEAK 286

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L + LQ   T    +IF  +K +V ++   L  +G    AIHG+  Q  R+  +  F
Sbjct: 287 VVYLLECLQK--TPPPVLIFAEKKSDVDDIHEYLLLKGVEAVAIHGDKSQEERVHAIREF 344

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
            +G   ++VA+D+A++GLD PD+ HV NFD+P   ENY+HRIGRTGR G+ G A T + K
Sbjct: 345 HQGNKDVLVATDVASKGLDFPDIQHVINFDMPEDIENYVHRIGRTGRCGKTGVATTFINK 404

Query: 352 E-------DIKHI 357
                   D+KH+
Sbjct: 405 SCEESVLLDLKHL 417


>gi|149244712|ref|XP_001526899.1| eukaryotic initiation factor 4A-12 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152032453|sp|A5DWJ1|FAL1_LODEL RecName: Full=ATP-dependent RNA helicase FAL1
 gi|146449293|gb|EDK43549.1| eukaryotic initiation factor 4A-12 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 399

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 122/369 (33%), Positives = 202/369 (54%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P+++  +   G+  P+ IQ + I  ++   D    AQ+GTGKTA+F + ML +
Sbjct: 28  FESMRLKPELLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEV 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   ++ +  + L+L PTRELA Q+ +  +  G   N+     IGG       K+L++G
Sbjct: 88  LD---SKSKECQALVLSPTRELATQIQNVIKHLGDYMNIQTYACIGGKNVGTDIKRLQQG 144

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+LD   R  L   +I++L++DEAD +   GF   I  I   +P   Q ++
Sbjct: 145 QQIVSGTPGRVLDVIKRRNLSTRHIKMLILDEADELFTKGFKEQIYEIYKHLPPGVQVVV 204

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+T E+ +++  F  +P +I V     +   I+  ++    +   +   C L   L 
Sbjct: 205 VSATLTHEVLEMTGKFTTDPVKILVKREEVSLSGIKQYYIQCEKEDWKFDTLCDLYDNL- 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K  V  L   + KQ F+V A+HG++ Q  R  I+++F+ G  +++
Sbjct: 264 ----TITQAVIFCNTKIKVNWLTDQMRKQNFTVVAMHGDMKQEERDAIMNDFRSGNSRVL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  +  V N+D+P   ENYIHRIGR+GR GR G A  L+ K D   + A
Sbjct: 320 ISTDVWARGIDVQQISLVINYDLPLDKENYIHRIGRSGRFGRKGTAINLLTKSDTIELKA 379

Query: 360 IEKLIEKKV 368
           +EK    K+
Sbjct: 380 LEKYYSTKI 388


>gi|157962445|ref|YP_001502479.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157847445|gb|ABV87944.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 448

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 128/374 (34%), Positives = 208/374 (55%), Gaps = 7/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L  +++ ++   G   PT IQ + IP+ L   D+   ++TG+GKT +F+LP +
Sbjct: 1   MQFTDFALDQRLLQSLKHMGIDTPTEIQEQAIPVALAGKDLMASSKTGSGKTLAFLLPAM 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L   +A   R PR +IL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRLISCKALSKRDPRVVILLPTRELATQVYSQLRLLVANTQFKATKILGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGR+ DH  +  L +N +E+L++DEADRMLD+GF   ++ I +     R 
Sbjct: 121 SRDPHFVVATPGRLADHLKQHHLHLNGLELLILDEADRMLDLGFAEQLKMINAAADHKRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   ++  ++   L+ P+ + +   +   + I +  F+  +  +  K A+L 
Sbjct: 181 QTLMFSATLDHGDVNDIANELLKFPEHVAIGAGNLEHKDITQRIFLCDHLDH--KEAILT 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L+ ++  K  IIF   +++   L   L  +GF   ++ G + Q +R +I+  F  G  
Sbjct: 239 RILK-EEQQKQIIIFTATRQDTDRLATKLAAEGFKTASLSGELKQNARNQIMDEFSRGLQ 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +
Sbjct: 298 QILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWIN 357

Query: 357 IDAIEKLIEKKVDW 370
              ++  + K  ++
Sbjct: 358 FTQVQTFLNKTFNF 371


>gi|159484128|ref|XP_001700112.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158272608|gb|EDO98406.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 637

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 213/376 (56%), Gaps = 26/376 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD+ L P V+  +   G  KPT IQ++ +P+ L   D+ GIA TG+GKT  F LPM+ I
Sbjct: 193 FADMKLPPAVLRVLASKGIKKPTQIQMQGLPVALSGRDMIGIASTGSGKTLVFTLPMILI 252

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+ +     P  +++ P+RELA Q  +  + Y +  N      + V L IGGI 
Sbjct: 253 ALQEEMRMPLGQNEGPIGMVICPSRELATQTYEIADMYCQALNADRYPEVRVMLCIGGID 312

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD-MGFIPYIQNI 170
            +   + L RG   ++ TPGR+ D  ++ ++ ++    L +DEADRM+D +GF   +++I
Sbjct: 313 PKPMYETLRRGLHAVVATPGRLKDLLHKKRMNLDICRYLCLDEADRMVDQVGFEDDVRDI 372

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTL+FSATM  +++  +E+ L +P  +EVN   + A  ++   V    +Y K
Sbjct: 373 LSFFRGQRQTLMFSATMPAKIKAFAESALVDP--VEVNVGRAGAANMD---VIQEVEYVK 427

Query: 231 KCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A L  LL+  Q T    ++F   K++V  +   L  QG    A+HG+  Q  R   ++
Sbjct: 428 EEAKLPYLLECLQKTAPPVLVFAENKRDVDIIHEYLLVQGVEAVAVHGDKAQEDRHAAIA 487

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK+G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T +
Sbjct: 488 SFKKGDADVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRCGKTGVATTFI 547

Query: 350 AKE--------DIKHI 357
             +        D+KH+
Sbjct: 548 NTKQCSETILLDLKHL 563


>gi|238062179|ref|ZP_04606888.1| RNA helicase [Micromonospora sp. ATCC 39149]
 gi|237883990|gb|EEP72818.1| RNA helicase [Micromonospora sp. ATCC 39149]
          Length = 707

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 123/352 (34%), Positives = 193/352 (54%), Gaps = 10/352 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DFA LGL   +V A+   G   P PIQ  T+P  L   DV G  QTG+GKT +F LP++
Sbjct: 102 VDFAALGLPQPLVQALGRLGIATPFPIQRATVPDALAGRDVLGRGQTGSGKTLAFGLPVI 161

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L K      + PR L+L PTRELA QV D     GK   + +   +GG+P++ Q   L
Sbjct: 162 ARLAKRARARPLHPRALVLVPTRELAMQVNDALVPLGKAVGIFLKTAVGGVPYDRQIDAL 221

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG ++++ TPGR+ D  NRG   ++++E+ V+DEAD+M DMGF+P +  + +  P   Q
Sbjct: 222 RRGVEIVVATPGRLGDLINRGVCHLDDVEVTVLDEADQMADMGFLPEVTELLAKTPAGSQ 281

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQ 237
            LLFSAT+  ++  + + F+ +P        ++   T++H    +  + +++   ++  +
Sbjct: 282 RLLFSATLDGDVDSLVKRFMTDPVTHSTAPATAAVSTMDHHLLLIPPHDKFAVTASIAAR 341

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             ++       ++F   +  V  L   L   G     +HG   QR R K L+ F+EG + 
Sbjct: 342 AGRT-------MLFARTQLGVDRLVEQLAAVGVRAGGLHGGKTQRMRTKTLAEFREGRMS 394

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++VA+D+AARG+ +  V  V + D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 395 VLVATDVAARGIHVDGVSLVLHVDPPKEPKDYLHRAGRTARAGESGAVATLV 446


>gi|238502010|ref|XP_002382239.1| ATP-dependent RNA helicase, putative [Aspergillus flavus NRRL3357]
 gi|220692476|gb|EED48823.1| ATP-dependent RNA helicase, putative [Aspergillus flavus NRRL3357]
          Length = 498

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/345 (37%), Positives = 194/345 (56%), Gaps = 11/345 (3%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG---RARVRMPRT 75
           + +  PT IQ  T PL+    DV GIA+TG+GKT +F LP L  ++     + +   P  
Sbjct: 98  SSFKSPTSIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKIQDSAMTKQKPYRPLA 157

Query: 76  LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           +I+ PTRELA Q+ D   K+  +  + +A + GG+  E Q + L + A V++ TPGR+ D
Sbjct: 158 VIISPTRELAMQIYDQLLKFSGSVGVRMACVFGGVRKEEQREAL-KTAGVVVATPGRLKD 216

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQTLLFSATMTDELQKV 194
             N G + +  ++ LV+DEADRMLD GF   I++I   +P + RQT++F+AT    ++ +
Sbjct: 217 LQNDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIIRPMPVSKRQTIMFTATWPPSVRDL 276

Query: 195 SENFLQNPKRIEVNTPSST---AETIEHCFVATYAQYSKKCALLQQLLQSQDTM---KNG 248
           +  F+ +P  + +    S    A T     V     + K+  L+Q L +SQ  +   +  
Sbjct: 277 ASTFMSSPVTVTIGGDPSADPRANTRIKQVVEVVKPHEKESRLVQLLNRSQRGVPEPEKV 336

Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           + FC  KK  + +   L  +GF V  IHG++ Q+ R + L  FK G   ++VA+D+AARG
Sbjct: 337 LAFCLYKKEAMRIERLLRTKGFKVAGIHGDLSQQERFRSLDAFKTGAATVLVATDVAARG 396

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           LDIP V  V N   P   E+Y+HRIGRTGRAG  G A TL  + D
Sbjct: 397 LDIPSVKQVINVTFPLTVEDYVHRIGRTGRAGAEGHAVTLFTETD 441


>gi|327392908|dbj|BAK10330.1| ATP-independent RNA helicase DbpA [Pantoea ananatis AJ13355]
          Length = 439

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 204/353 (57%), Gaps = 8/353 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY   TP+Q  T+P +L   DV   A+TG+GKTA+F + +L  ++    + +    LIL 
Sbjct: 2   GYTSMTPVQAATLPAILDGRDVRAQAKTGSGKTAAFGIGLLQHIDSAHFQTQ---ALILC 58

Query: 80  PTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QV++   +  +   N+ +  L GG P  AQ   L     +++ TPGRILDH  
Sbjct: 59  PTRELADQVSNVLRQLARFTRNIKILTLCGGQPMSAQRDSLVHAPHIVVGTPGRILDHIK 118

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           R  L + ++  LV+DEADRML+MGF   ++ I +  P +RQTLLFSAT  + +  +S+ F
Sbjct: 119 RETLKLESLRTLVLDEADRMLEMGFRDDMETIIAATPASRQTLLFSATWPEGIAALSQRF 178

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            +    + V    S    IE  F+   A + +K +LL  LL  +    + ++FCN K+  
Sbjct: 179 QREALSV-VTEEVSELPAIEQQFI--EASHGEKLSLLISLLSERQP-SSCVVFCNTKREC 234

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            ++  +L  +  S   +HG+++QR R ++L  F  G+ +++VA+D+AARGLDI  +  V 
Sbjct: 235 DDIAAALNARDISALPLHGDLEQRDRERVLIRFANGSGRVLVATDVAARGLDIKLLSLVV 294

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
           N+ +    E ++HRIGRT RAG  G A + VA +++    A+E  +++K+ W+
Sbjct: 295 NYQLAWDPEVHLHRIGRTARAGEQGAAVSFVAADEMARAHALEDFLQQKLPWV 347


>gi|254387115|ref|ZP_05002388.1| DEAD-box RNA helicase [Streptomyces sp. Mg1]
 gi|194345933|gb|EDX26899.1| DEAD-box RNA helicase [Streptomyces sp. Mg1]
          Length = 524

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 124/349 (35%), Positives = 189/349 (54%), Gaps = 8/349 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ +   ++  +   G  +P PIQ  T+P  L   D+ G  +TG+GKT +F L +L  
Sbjct: 15  FEDMDMPEALLKTLAAQGVTEPFPIQAATLPNSLAGRDLLGRGRTGSGKTLAFGLALLAR 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA+ + P  L+L PTRELA QV D    Y  + NL +A ++GG+    Q+  L RG
Sbjct: 75  TAGHRAQPKQPLALVLVPTRELAQQVTDALAPYATSVNLRIATVVGGMSINRQSGALRRG 134

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+VL+ TPGR+ D  +RG   ++ + I V+DEAD+M DMGF+P +  +   V    QT+L
Sbjct: 135 AEVLVATPGRLKDLIDRGDADLSQVAITVLDEADQMTDMGFMPQVTALLKQVRPEGQTML 194

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + K+ + FL +P    V+  +    T+EH  +    +  KK       + ++
Sbjct: 195 FSATLDKNIDKLVKMFLHDPVGHSVDPSAGAVTTMEHHVLYVMDETDKKA------VATR 248

Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++G  I+F + K+ V  +   L   G     +HG   Q  R + L  FK G +  +V
Sbjct: 249 IAARDGRVIMFVDTKRGVDRMVKKLLADGVRASGLHGGRSQPQRNRTLDWFKTGEVTALV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           A+++AARG+ I D+  V N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 309 ATNVAARGIHIDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLV 357


>gi|160380616|sp|A6ZUA1|DBP3_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP3; AltName: Full=DEAD
           box protein 3; AltName: Full=Helicase CA3
 gi|151943729|gb|EDN62039.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
          Length = 523

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 128/342 (37%), Positives = 201/342 (58%), Gaps = 8/342 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           + KPTPIQ    P +L   DV G+A+TG+GKT +F +P ++ L   + + R  + L++ P
Sbjct: 132 FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKK-RGIQVLVISP 190

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TRELA+Q+ DN         +    + GG+P + Q  +L++ + V++ TPGR+LD    G
Sbjct: 191 TRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKK-SQVVVATPGRLLDLLQEG 249

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQTLLFSATMTDELQKVSENFL 199
            + ++ +  LV+DEADRML+ GF   I+NI      + RQTL+F+AT   E+++++  F+
Sbjct: 250 SVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFM 309

Query: 200 QNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG---IIFCNQK 255
            NP ++ + NT   TA       V       K+  LL+ L +     K     +IF   K
Sbjct: 310 NNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYK 369

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           K    +  +L+  G+++ AIHG++ Q+ R + L+ FK G   L++A+D+AARGLDIP+V 
Sbjct: 370 KEAARVERNLKYNGYNIAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVK 429

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            V N   P   E+Y+HRIGRTGRAG+ G A TL  +++ KH+
Sbjct: 430 TVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQE-KHL 470


>gi|326534262|dbj|BAJ89481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 210/368 (57%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++ A LG+SP++V  +   G  +  PIQ   +   +Q  D+ G A+TGTGKT +F +P++
Sbjct: 87  LEVARLGISPRIVERLAARGITRLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIM 146

Query: 61  TIL----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             +    EK     R P  +IL PTRELA QV   F +   +  L    + GG+P   Q 
Sbjct: 147 DRILRHNEK-NGSGRNPLAIILAPTRELARQVEKEFRE---SAPLDTLCVYGGVPISQQM 202

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  G DV++ TPGR++D   RG L ++ I+ +V+DEAD+ML +GF   ++ I   +P 
Sbjct: 203 RTLNYGVDVVVGTPGRVIDLLRRGVLNLSEIQFMVLDEADQMLAVGFDEAVEVIMEKLPQ 262

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ++LFSATM   ++K++  +L++P  I++   S           +  ++   K ++L 
Sbjct: 263 NRQSMLFSATMPSWIRKLTNQYLKDPVIIDLVGDSEQKLPEGISLYSIVSENYGKSSILG 322

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++        I+F   K+    L +++ +  ++  A+HG+I Q  R + LS F++G  
Sbjct: 323 PLIKEHADGGKCIVFTQTKREADRLAYAMGRS-YACQALHGDISQNQRERTLSGFRDGRF 381

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLDIP+V  V ++++PN +E ++HR GRT RAG+ G A  +   E  + 
Sbjct: 382 NILVATDVAARGLDIPNVDLVVHYEIPNSSELFVHRSGRTARAGKKGIAILMYTYEQSRT 441

Query: 357 IDAIEKLI 364
           +  IE+ I
Sbjct: 442 VKGIEQDI 449


>gi|198470572|ref|XP_001355346.2| GA10556 [Drosophila pseudoobscura pseudoobscura]
 gi|198145515|gb|EAL32403.2| GA10556 [Drosophila pseudoobscura pseudoobscura]
          Length = 939

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 128/377 (33%), Positives = 207/377 (54%), Gaps = 14/377 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L   V+  +   G+ KPT IQ +  P+ L   D+ GIAQTG+GKT +++LP + 
Sbjct: 239 NFEECSLPAHVIDEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIV 298

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNK 117
            + K     R   P  L+L PTRELA Q+      YG      +    + GG     Q +
Sbjct: 299 HIGKQPPILRGEGPIALVLAPTRELAQQIQSVVRDYGHLCQPEIRHTCIFGGSSKVPQAR 358

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LERG +V+I TPGR++D        +     LV+DEADRMLDMGF P I+ I   +   
Sbjct: 359 DLERGVEVIIATPGRLIDFLENRNTNLARCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 418

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKC 232
           RQ +++SAT   E+Q ++ +FL +  +I + + + +A     + +E C      Q  +  
Sbjct: 419 RQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEMEKPQ--RMV 476

Query: 233 ALLQQLLQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            LL+++  + ++  NG   IIF   K  V ++   +  +G+   +IHG+  Q  R  +L 
Sbjct: 477 RLLKEIAPTNNSANNGNKIIIFVETKIKVEDILQIIRTEGYIATSIHGDKTQNERDSVLK 536

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G   +++A+D+A+RGLD+ D+ +V N+D PN +ENY+HRIGRTGR  + G A+T  
Sbjct: 537 DFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFF 596

Query: 350 AKEDIKHIDAIEKLIEK 366
             ++ K    +  ++E+
Sbjct: 597 TPDNAKQARELISVLEE 613


>gi|260769645|ref|ZP_05878578.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
 gi|260614983|gb|EEX40169.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
          Length = 442

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 203/373 (54%), Gaps = 5/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + + T IQ + IP+ +   D+   ++TG+GKT +F+LPML
Sbjct: 1   MQFKDLGLDNRLLKTLAHFDFKQATQIQQQAIPVAMAGKDLLASSKTGSGKTLAFLLPML 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +A   R PR +IL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 61  HKALKTKALSARDPRGVILVPTRELAKQVYGELRTMLSGLSYTATLITGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            RG   ++ TPGR+ DH     L +  +E L++DEADRMLD+GF P +++I +     R 
Sbjct: 121 RRGPKFIVATPGRLADHLEHRSLFLEGLETLILDEADRMLDLGFAPQLRHIHNAAKHRRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTLLFSAT+   ++  ++   L + K I V   +   + I   F         K ALL +
Sbjct: 181 QTLLFSATLDHAQVNDIAYEMLNDAKHIAVGGSNEQHKDITQRFYLC-DHLDHKEALLDR 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L   D  +  IIF   + +   L   L ++     A+ G+++Q  R  I+S F+    +
Sbjct: 240 VLDDAD-YRQVIIFTATRDDTERLTAKLNERKLKAVALSGSLNQIQRNTIMSQFERAVFK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+A+RGLDI +V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D    
Sbjct: 299 ILVTTDVASRGLDIANVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSF 358

Query: 358 DAIEKLIEKKVDW 370
             +E  +++ + +
Sbjct: 359 KRVEAYLKQDIQF 371


>gi|212635941|ref|YP_002312466.1| DEAD box family ATP-dependent RNA helicase [Shewanella
           piezotolerans WP3]
 gi|212557425|gb|ACJ29879.1| ATP-dependent RNA helicase, DEAD box family [Shewanella
           piezotolerans WP3]
          Length = 447

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 128/371 (34%), Positives = 204/371 (54%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L  +++  +   G   PT IQ + IP+ L   D+   ++TG+GKT +F+LP +
Sbjct: 1   MQFTDFSLDQRLLQTLKHMGIDTPTEIQEQAIPIALAGKDLMASSKTGSGKTLAFLLPAM 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   +A   R PR +IL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRMISCKALSKRDPRAVILLPTRELATQVYSQLRLLVANTQFKATKILGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGR+ DH  +  L +N +E+L+ DEADRMLD+GF   ++ I +     R 
Sbjct: 121 ARDPHFVVATPGRLADHLKQHHLHLNGLELLIFDEADRMLDLGFAEQLKQINNAADHKRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   ++ +++   L+ P+ + +   +   + I +  F+  +  +  K ALL 
Sbjct: 181 QTLMFSATLDHGDVDEIAAELLKTPEHVAIGAGNLEHKDITQRIFLCDHLDH--KEALLS 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L+ +   K  IIF   +++   L   L   GF   ++ G + Q +R +I+  F  G  
Sbjct: 239 RILKDEQ-QKQIIIFTATRQDTDRLAKKLADDGFKTASLSGELKQSARNQIMDEFSRGLQ 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +
Sbjct: 298 QILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAVSLVGPKDWVN 357

Query: 357 IDAIEKLIEKK 367
              ++  + K+
Sbjct: 358 FTQVQTFLNKQ 368


>gi|109478564|ref|XP_234443.4| PREDICTED: DEAD-box protein abstrakt-like [Rattus norvegicus]
          Length = 621

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 132/361 (36%), Positives = 199/361 (55%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L   ++  +   G + PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 182 FKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 241

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 242 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALCIGGVS 301

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 302 LKEQMETMRHGVHIMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 361

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + +N   + A +++   V    +Y K+
Sbjct: 362 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKE 416

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 417 EAKMVYLLECLQKTPPPVLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 476

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 477 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 536

Query: 351 K 351
           K
Sbjct: 537 K 537


>gi|153821037|ref|ZP_01973704.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae B33]
 gi|255746274|ref|ZP_05420221.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|126521411|gb|EAZ78634.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae B33]
 gi|255736028|gb|EET91426.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
          Length = 406

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 201/368 (54%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A L     +P+ IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 1   MSFSSLALSADLIQA-LPKAITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++     G    L    L GG+    Q   L 
Sbjct: 60  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 116 ENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 175 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 233

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N  +L   L K G     +HG+  Q  R   L+ FK GT Q+++
Sbjct: 234 HQ--WPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+HG A +LV   ++  ++A 
Sbjct: 292 ATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNAT 351

Query: 361 EKLIEKKV 368
             L ++++
Sbjct: 352 RTLTQREL 359


>gi|154285130|ref|XP_001543360.1| eukaryotic initiation factor 4A-12 [Ajellomyces capsulatus NAm1]
 gi|160385733|sp|A6QSQ0|FAL1_AJECN RecName: Full=ATP-dependent RNA helicase FAL1
 gi|150407001|gb|EDN02542.1| eukaryotic initiation factor 4A-12 [Ajellomyces capsulatus NAm1]
          Length = 450

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 137/439 (31%), Positives = 227/439 (51%), Gaps = 27/439 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L +
Sbjct: 27  FEDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQV 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     +R  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 87  ID---TVLRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDHG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 144 QHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVV 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 204 VSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTL- 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++
Sbjct: 263 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 319 ISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRD 378

Query: 360 IEKLIEKKVDW--LNGDLSSLN-PPLEKID--IAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           IE     ++D   +NG L  L   P+ ++   + Q N  R     P   T       ++S
Sbjct: 379 IELYYSTQIDEMPMNGTLFYLRYRPMSRLSLWLTQSNSCR-----PSHVTTL-----SWS 428

Query: 415 SQKSH-IPLKESEKISKLQ 432
           +   H  PL      SK+Q
Sbjct: 429 TNVEHTFPLLLMNAFSKIQ 447


>gi|84994532|ref|XP_951988.1| ATP-dependent RNA helicase [Theileria annulata strain Ankara]
 gi|65302149|emb|CAI74256.1| ATP-dependent RNA helicase, putative [Theileria annulata]
          Length = 455

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/370 (34%), Positives = 209/370 (56%), Gaps = 13/370 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+  ++  A  + G+  PT IQI+ IP+ L   D+ G+A+TG+GKTA+F +P   I
Sbjct: 43  FEDLGVCVELCRACKELGWKTPTKIQIEAIPIALSGKDIIGLAETGSGKTAAFTIP---I 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K   + +   +LIL PTREL+ Q+ +          L V L++GG+   +Q  +L + 
Sbjct: 100 LQKLLEKPQRLFSLILAPTRELSLQIKEQL--ISLEIGLDVCLILGGLDMVSQALQLSKK 157

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++ +PGRI DH    K   +  I+ LV+DEAD++L   F   +  I   +P  + T 
Sbjct: 158 PHIIVGSPGRIADHLQNTKGFSLETIKYLVLDEADKLLSADFDDSLNKIIISLPKDKVTY 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLL 239
           L+SATMT ++ K+ +  L  P +I VNT   T E +  ++  +    +Y+    +L +  
Sbjct: 218 LYSATMTSKITKLQKVTLMKPIQINVNTKYHTNELLIQKYLLIPLKFKYTYLACILWKY- 276

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S  T+   ++FCN       +   L+   F    +HG + Q  R+  L++FK G   ++
Sbjct: 277 -STSTI---MVFCNTCLTSQKVTLFLQNLSFKSVCLHGKLSQIQRLNSLNSFKTGLFNIL 332

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+ +RG+DIP V  V NFDVPN +++YIHR+GRT RAG+ G + TL+ + DI+    
Sbjct: 333 VVTDVGSRGIDIPFVDLVINFDVPNTSKDYIHRVGRTARAGKSGISLTLITQYDIEAFQR 392

Query: 360 IEKLIEKKVD 369
           IE  + KK++
Sbjct: 393 IEYALNKKLE 402


>gi|237830475|ref|XP_002364535.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|211962199|gb|EEA97394.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|221507408|gb|EEE33012.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
          Length = 685

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 199/366 (54%), Gaps = 21/366 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
             F + G    +   +    + +PT IQ    P  L   D+ GIAQTG+GKT  F+LP L
Sbjct: 277 FSFEETGFPTAIQNQLRKMNFAEPTAIQKIGWPTALSGRDMIGIAQTGSGKTLGFLLPGL 336

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-------------VAL 105
                +   A+ + P  L+L PTRELA Q+     ++ +  +L               A 
Sbjct: 337 VHAAAQPPLAQGQGPIVLVLAPTRELAMQIRHECMRFTEGLSLASSEDPQRADTKFRTAC 396

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG+P + Q  +L  GA++LI TPGR++D  + G   +  +  +V+DEADRM+DMGF P
Sbjct: 397 VYGGVPRQGQATELRNGAEILIATPGRLIDFLDLGVTNLKRVSYIVLDEADRMMDMGFEP 456

Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK-RIEVNTP--SSTAETIEHCFV 222
            ++ I S V   RQTLL+SAT   E++ ++  F +    +++V      + A   +   V
Sbjct: 457 QVRKIFSQVRPDRQTLLWSATWPKEVRGLASEFCRTRVVKLQVGKADLQANANVTQRIEV 516

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
            +  Q   +   L  +LQ + T +  +IFC  K+    LC  L  +     AIHG+ +QR
Sbjct: 517 VSSNQLQHR---LLSVLQEEVTGQKTLIFCETKRQCDQLCRELRYRQLRALAIHGDKEQR 573

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R +IL +F++G  ++++A+D+A+RGLDI DV  V N+DVP   E+YIHRIGRTGRAG  
Sbjct: 574 ERDRILHDFRKGDCEILLATDVASRGLDIQDVKFVINYDVPKNIESYIHRIGRTGRAGNK 633

Query: 343 GKAFTL 348
           G A + 
Sbjct: 634 GTAISF 639


>gi|312372006|gb|EFR20059.1| hypothetical protein AND_20736 [Anopheles darlingi]
          Length = 850

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 141/382 (36%), Positives = 209/382 (54%), Gaps = 20/382 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L+  +   V  A Y KPTP+Q   IP++L   D+   AQTG+GKTA+F++P+L  
Sbjct: 352 FDDIELTEIIDNNVKLARYDKPTPVQKYAIPIILAGRDLMACAQTGSGKTAAFLVPILNQ 411

Query: 63  LEKGRA-----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
           + K              R + P  L+L PTRELA Q+ +  +K+     +  A+L GG  
Sbjct: 412 MYKHGVSAPPPNRPMNRRKQYPLGLVLAPTRELATQIFEESKKFCYRSRMRPAVLYGGNN 471

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q ++L+RG  +++ TPGR+ D   RGK+ ++NI  LV+DEADRMLDMGF P I+ I 
Sbjct: 472 THEQMRELDRGCHLIVATPGRLEDMITRGKVGLDNIRFLVLDEADRMLDMGFEPQIRRIV 531

Query: 172 --SLVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
             S +P T  RQTL+FSAT    +Q+++ +FL     + V    ST+  I          
Sbjct: 532 EDSRMPVTGERQTLMFSATFPKAIQELASDFLYRYIFLAVGRVGSTSVNITQTIFWVEEN 591

Query: 228 YSK---KCALLQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             +      L    LQ++    N   +IF   KK   +L   L    + V +IHG+  Q 
Sbjct: 592 IKRSHLLDLLSSISLQNEGDAANSLTLIFVETKKAADSLEEFLYSYDYPVTSIHGDRSQD 651

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 652 EREEALRLFRCGRCPILVATAVAARGLDIPNVKHVINFDLPSEVEEYVHRIGRTGRMGNL 711

Query: 343 GKAFTLVAKEDIKHIDAIEKLI 364
           G A +   +++    + + +L+
Sbjct: 712 GTATSFFNEKNRNVANGLVRLL 733


>gi|117619806|ref|YP_855172.1| DEAD-box ATP dependent DNA helicase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561213|gb|ABK38161.1| ATP-dependent RNA helicase, dead box family [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 406

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 126/345 (36%), Positives = 192/345 (55%), Gaps = 6/345 (1%)

Query: 24  PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRE 83
           PT +Q   IP  L   D+  +A+TG+GKT +F LP+L  L+    RV+    L+L PTRE
Sbjct: 23  PTRVQQLAIPAALAGRDLLALARTGSGKTLAFGLPLLQRLDPASDRVQ---GLVLVPTRE 79

Query: 84  LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           LA QV++  +       L +  L GG+    Q  +L  G  +L+ TPGR+ D   +  L 
Sbjct: 80  LAVQVSEALQGPAAGLGLRLVTLCGGVAQALQQAELALGPQLLVATPGRLRDLLAQQLLG 139

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           ++ +  LV+DEADR+L+MGF P IQ + + +P  RQTLLFSAT+  EL  ++   L  P 
Sbjct: 140 LSQLRHLVLDEADRLLEMGFWPDIQWLLNAMPVERQTLLFSATLPAELDALATGLLTEPV 199

Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
           R+E +  +S A+ IE          S K   L  LL++ +     ++F + + +   +  
Sbjct: 200 RVEADPRNSVADDIEERLY--LVNKSSKVPALISLLKAHE-WPQVLVFISARDDADGVAR 256

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
            L K G +V A+HG  +Q  R + L +FK G ++++VA+DL ARG+ +  +  V N D+P
Sbjct: 257 KLAKAGITVAALHGEKEQAVREQALGDFKAGKVRVLVATDLMARGIHVEALPLVINLDLP 316

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
             A  Y+HRIGRT RAGR G A +L    +   + AI  L  +++
Sbjct: 317 ASAPVYVHRIGRTARAGRSGLAISLTCHGEADTLAAIRTLTGREL 361


>gi|297709568|ref|XP_002831500.1| PREDICTED: probable ATP-dependent RNA helicase DDX53-like [Pongo
           abelii]
          Length = 629

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 204/361 (56%), Gaps = 7/361 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK---G 66
           P ++ ++   G VKPTPIQ +  P++LQ  D+  +AQTGTGKT S+++P    L+     
Sbjct: 231 PDLLKSITRVGIVKPTPIQSQAWPIILQGIDLIEVAQTGTGKTLSYLMPGFIHLDSQPIS 290

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTRELA QV     KY     L    + GG     Q + + +G D++
Sbjct: 291 REQRNGPGMLVLTPTRELALQVEAQCSKYSYK-GLKSICIYGGRNRIGQIEDISKGVDII 349

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + +I  LVIDEAD+MLDM F P I  I   V   RQT++ SAT
Sbjct: 350 IATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIMKILLDVRPDRQTVMTSAT 409

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
             D +++++ ++L++P  + V   +  A  T++   + T  +  +K AL Q+ +++    
Sbjct: 410 WPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEK--EKRALTQEFVENMSPN 467

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F +QK    +L      QG SV ++HGN +   + + L +FK G I++++ +D  
Sbjct: 468 DKVIMFVSQKHTADDLSSDFNIQGISVESLHGNTEHSDQERALEDFKSGNIKILITTDFV 527

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
            RGLD+ DV HV+N+D P   E Y+HR+G  GRAG+ G + TL+ + D K    + K+++
Sbjct: 528 PRGLDLNDVTHVYNYDFPRNIEVYVHRVGYIGRAGKTGTSVTLITQRDSKMAGELIKILD 587

Query: 366 K 366
           +
Sbjct: 588 R 588


>gi|150863785|ref|XP_001382380.2| pre-mRNA splicing factor RNA helicase of DEAD box family
           [Scheffersomyces stipitis CBS 6054]
 gi|158514818|sp|A3LNL1|PRP28_PICST RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|149385041|gb|ABN64351.2| pre-mRNA splicing factor RNA helicase of DEAD box family
           [Scheffersomyces stipitis CBS 6054]
          Length = 482

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 138/414 (33%), Positives = 222/414 (53%), Gaps = 47/414 (11%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           + +  +  K++  ++D   Y++PTPIQ   IPL L + DV GIA+TG+GKT +F++P+L+
Sbjct: 58  WNEASIPSKLLSIIVDKLEYLEPTPIQRAAIPLALNQRDVVGIAETGSGKTLAFLIPLLS 117

Query: 62  IL-----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
            +            +       P  LIL PTRELA Q+    +K+G    L V  +IGG 
Sbjct: 118 YILNTDKNYLEYEHQQEQNYNKPLGLILAPTRELAQQITKEAQKFGDRLGLNVVSIIGGH 177

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
            +E     +  G  V++ TPGR++D   R  + ++    L++DEADRM+DMGF   +Q+I
Sbjct: 178 QYEETVHSIRTGVHVVVATPGRLVDSLERNIIGLDKCYYLIMDEADRMIDMGFEKALQSI 237

Query: 171 TSLVPFT----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA 214
            S VP T                R TL+F+AT++  ++K+++NFL  P  + +       
Sbjct: 238 LSYVPSTDRLNSTIDSMIFHIKKRITLMFTATISPPIEKITKNFLIKPGYLYIGGAGEAL 297

Query: 215 ETI----EHCFVATYA-------QYSKKCALLQQLLQSQDTMKNG-IIFCNQKKNVVNLC 262
           + I    E+   AT         ++ K   ++QQ   S+++ +   IIF N K+    L 
Sbjct: 298 DHIVQNFEYLGSATGGSEDFDSKRFDKLVRIIQQ--HSRESRQFSIIIFANYKRVCDLLS 355

Query: 263 HSLEKQGF-SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321
             LEK GF     IHG+  Q  R K +S+F+    ++++A+D+AARG+D+P+V  V NF 
Sbjct: 356 LELEKNGFRDNVVIHGSKTQELREKAISSFRSHESRILIATDVAARGIDVPNVSLVVNFQ 415

Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI----EKKVDWL 371
           +  + + Y+HRIGRTGRAG  G+++T +   D      ++K +    +K  DWL
Sbjct: 416 MSRKFDEYVHRIGRTGRAGNRGESYTFIDDSDSDVFIDLKKFLVNGGKKCPDWL 469


>gi|320033151|gb|EFW15100.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Coccidioides
           posadasii str. Silveira]
          Length = 820

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 125/384 (32%), Positives = 204/384 (53%), Gaps = 35/384 (9%)

Query: 3   FADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           + + GL PK +  ++D  GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 382 WGESGL-PKRLLEIIDKVGYKDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 440

Query: 62  IL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +       E    +   P  +IL PTRELA Q+ +   K+       V  ++GG   E 
Sbjct: 441 YIAELPRLDEFEWRKSDGPYAIILAPTRELAQQIENEARKFCNPLGFNVVSIVGGHSLEE 500

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q+  L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 501 QSFSLRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 560

Query: 175 PFT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNT 209
           P +                         RQT++++ATM   +++++  +L+ P  + +  
Sbjct: 561 PVSNEKPDTEEAEDARAMSQHLGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 620

Query: 210 PSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269
                +T+E   V   +   K+   L  +L S +     I+F N K+N   +   +++ G
Sbjct: 621 IGEAVDTVEQ-RVEFISGEDKRKKRLADILASGEFRPPIIVFVNIKRNCDAVARDIKQMG 679

Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329
           +S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+ DV  V NF++    E+Y
Sbjct: 680 YSSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVSDVSLVVNFNMATNIESY 739

Query: 330 IHRIGRTGRAGRHGKAFTLVAKED 353
            HRIGRTGRAG+ G A T +  ED
Sbjct: 740 THRIGRTGRAGKSGVAITFLGNED 763


>gi|308159475|gb|EFO62004.1| ATP-dependent RNA helicase [Giardia lamblia P15]
          Length = 449

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 132/396 (33%), Positives = 219/396 (55%), Gaps = 22/396 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH--DVCGIAQTGTGKTASFVLP 58
           M F DLG+ P+++ A+   G+++PT IQ + + +V      DV G+A+TG+GKT +F +P
Sbjct: 1   MLFRDLGVCPELLDALERIGWLEPTAIQKEMLAVVSHNKACDVVGVAETGSGKTGAFAIP 60

Query: 59  MLT-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L  +LE+G   V+   T++L PTRELA Q    F   GK + L   L+IGG+    Q K
Sbjct: 61  ALQDLLERGN-NVKGVHTVVLSPTRELAVQTFSVFRDLGKGFGLRTGLVIGGVDLMQQRK 119

Query: 118 KLERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            L +   VLICTPGR++DH    +   + ++  L+IDEAD+ML+      + ++T   P 
Sbjct: 120 TLAQQPHVLICTPGRLVDHLATTEGFSLKSLRFLIIDEADKMLEQDMGRAVLSLTKDCPQ 179

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEV-------------NTPSSTAETIEHCFVA 223
            R+T LFSAT    +Q +        + + +              + ++    +++ F++
Sbjct: 180 RRRTFLFSATFPSAVQALQNECTDRSRLVHIRVGVLTKAAPDVDGSTNTQLAVVDNEFLS 239

Query: 224 ---TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
                  +S+K   L  LL +  T +  I+F  +   V  L   L   GF V  +HG++ 
Sbjct: 240 HKMVVLPHSEKQLGLVVLLNNHATCQI-IVFATKISTVTKLALMLTTLGFEVGVVHGSMS 298

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q  R++ L+ F++G  ++++ASD+A RG+DIP++  V N+D+P  + +Y+HR+GRT RAG
Sbjct: 299 QDKRLEELNRFRQGEHKILLASDVAGRGIDIPNIDLVINYDLPVASRDYVHRVGRTARAG 358

Query: 341 RHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
           R G A T+V + D+ +   IE ++  K++    D S
Sbjct: 359 RRGTALTVVTQYDVVNFKRIEAMLGIKMEPYTPDFS 394


>gi|67613960|ref|XP_667337.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           hominis TU502]
 gi|126643927|ref|XP_001388148.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           parvum Iowa II]
 gi|10720033|sp|O02494|IF4A_CRYPV RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A
 gi|2150025|gb|AAB58726.1| translation initiation factor [Cryptosporidium parvum]
 gi|2155304|gb|AAB58799.1| translation initiation factor [Cryptosporidium parvum]
 gi|54658467|gb|EAL37111.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           hominis]
 gi|126117225|gb|EAZ51325.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           parvum Iowa II]
 gi|323508859|dbj|BAJ77322.1| cgd1_880 [Cryptosporidium parvum]
 gi|323510549|dbj|BAJ78168.1| cgd1_880 [Cryptosporidium parvum]
          Length = 405

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 124/360 (34%), Positives = 197/360 (54%), Gaps = 5/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L   ++  +   G+ KP+ IQ + I  +L  +D  G AQ+GTGKTA+FV+  L  
Sbjct: 33  FEALNLEGDLLRGIFAYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAAL-- 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +K    +   + L+L PTRELA Q+       G    L     +GG        KL+ G
Sbjct: 91  -QKIDYSLNACQVLLLAPTRELAQQIQKVALALGDYCELRCHACVGGTSVRDDMNKLKSG 149

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ D  ++G L ++N+++ ++DEAD ML  GF   I +I   +P   Q  L
Sbjct: 150 VHMVVGTPGRVFDMLDKGYLRVDNLKLFILDEADEMLSRGFKVQIHDIFKKLPQDVQVAL 209

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E+  ++  F+++PKRI V     T E I   +V       K   L+   L   
Sbjct: 210 FSATMPNEILHLTTQFMRDPKRILVKQEELTLEGIRQFYVGVEKDEWKMDTLID--LYET 267

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   II+CN ++ V  L   + ++ F+  ++HG++DQ+ R  I+  F+ G+ ++++ +
Sbjct: 268 LTIVQAIIYCNTRRRVDQLTKQMRERDFTCSSMHGDMDQKDREVIMRQFRSGSSRVLITT 327

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   E YIHRIGR+GR G+ G +   V  +DI  +  IE+
Sbjct: 328 DLLARGIDVQQVSLVINYDLPVSPETYIHRIGRSGRFGKKGVSINFVTDDDIVCLRDIER 387


>gi|313233521|emb|CBY09693.1| unnamed protein product [Oikopleura dioica]
          Length = 800

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 125/362 (34%), Positives = 214/362 (59%), Gaps = 11/362 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   +   GY  PTPIQ K IP ++   DV  +A+TG+GKTA+F++P+L  
Sbjct: 39  FQSMGLSHGVFKGIFRRGYKIPTPIQRKCIPKIIDGKDVVAMARTGSGKTAAFLIPILER 98

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K   R   PR +IL PTRELA Q A       K  NL+V++++GG   + Q  +L++ 
Sbjct: 99  LKKREQR--GPRVVILSPTRELAIQTAKFTNDLSKFCNLSVSVILGGDSLDNQFTQLDQN 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR+L         +N ++++V DEAD++ D+GF   +  I   +P ++QTLL
Sbjct: 157 PDIVIATPGRLLHLLVEMDRRLNYVKMVVFDEADQLFDLGFTEQLNEILGRLPESKQTLL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ +++ + ++  L++P+ I ++      E ++  F   +A++  K A L  LL + 
Sbjct: 217 FSATLPNKILEFAKAGLRDPELIRLDVERRLPENLQLTFF--HARHEDKIAALLHLLGNV 274

Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK------EGT 295
               +  +IF   K +V  +   LE+  ++ C I+ ++D  +R  ++S F+      + T
Sbjct: 275 IKADEKTVIFVATKHHVELVKLFLERYNYTPCYIYSSMDPFARKLMISRFRHEDEDPDKT 334

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +++ +D+AARG+DIP +  V NF    +A+ +IHR+GR  RAGR G A+++V+ E++ 
Sbjct: 335 TNILITTDIAARGIDIPLLDAVVNFHFAAKAKTFIHRVGRVARAGRPGHAYSIVSNEEMP 394

Query: 356 HI 357
           ++
Sbjct: 395 YL 396


>gi|302417364|ref|XP_003006513.1| ATP-dependent RNA helicase DRS1 [Verticillium albo-atrum VaMs.102]
 gi|261354115|gb|EEY16543.1| ATP-dependent RNA helicase DRS1 [Verticillium albo-atrum VaMs.102]
          Length = 757

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 128/339 (37%), Positives = 193/339 (56%), Gaps = 3/339 (0%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELA 85
           P   KTIP+ L   D+ G A TG+GKTA+FV+P+L  L     +V   R +IL PTRELA
Sbjct: 253 PGHQKTIPIALMGKDLVGGAVTGSGKTAAFVVPILERLLYRPKKVPTSRVVILTPTRELA 312

Query: 86  AQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF-NRGKLLM 144
            Q      K     ++   L +GG+  + Q  +L    DV+I TPGR +DH  N     +
Sbjct: 313 IQCHSVATKLAAYTDIKFTLAVGGLSLKMQEAELRLRPDVIIATPGRFIDHMRNSASFAV 372

Query: 145 NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKR 204
           + +EILV+DEADRML+ GF   +  I + +P +RQT+LFSATMT  + ++    +  P R
Sbjct: 373 DAVEILVLDEADRMLEDGFADELNEILTSMPKSRQTMLFSATMTSSVDRLIRVGMNTPAR 432

Query: 205 IEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
           + V++   T  T+   F+     + SK+   L  + ++  T +  IIF  QKK+      
Sbjct: 433 VMVDSQKKTVTTLTQEFIRLRPGRESKRMGYLLFICKTLYTERV-IIFFRQKKDAHRARI 491

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
                G S   +HG+++Q  R++ + +F++G +  ++A+DLA+RGLDI  +  V N++ P
Sbjct: 492 IFGLLGLSCAELHGSMNQTQRIQSVEDFRDGKVSYLLATDLASRGLDIKGIDTVINYEAP 551

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
            + E Y+HR+GRT RAGR G A TL A+ D K + A  K
Sbjct: 552 QKLEIYVHRVGRTARAGRAGVAVTLAAEPDRKVVKAAVK 590


>gi|254229364|ref|ZP_04922780.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|151938055|gb|EDN56897.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
          Length = 577

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 116/300 (38%), Positives = 179/300 (59%), Gaps = 4/300 (1%)

Query: 71  RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICT 129
           R P+ ++L PTRELA QVA   +  GKN   L V  + GG     Q + L+ GA V++ T
Sbjct: 6   RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRALKSGAQVIVGT 65

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGR+ D  NR +L ++ +   V+DEAD ML+MGF+  +  I    P + Q +LFSATM  
Sbjct: 66  PGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFSATMPP 125

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
            L+K+ E FL+ P  ++V   + T + ++  F        +K   + +LL++++T    I
Sbjct: 126 MLKKIVERFLREPVMVDVAGKNHTVDKVQQQFWVVKG--VEKDEAMSRLLETEET-DASI 182

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           +F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++VA+D+ ARGL
Sbjct: 183 VFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGL 242

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           D+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  IE++ +  ++
Sbjct: 243 DVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSME 302


>gi|92115299|ref|YP_575227.1| ATP-dependent RNA helicase DbpA [Chromohalobacter salexigens DSM
           3043]
 gi|91798389|gb|ABE60528.1| ATP-dependent RNA helicase DbpA [Chromohalobacter salexigens DSM
           3043]
          Length = 465

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 138/333 (41%), Positives = 198/333 (59%), Gaps = 7/333 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY   TPIQ +++P +L   DV G  QTG+GKTA+F L +L  LE    RV+    L+L 
Sbjct: 27  GYHAMTPIQAESLPAILAGRDVIGQGQTGSGKTAAFGLGVLAKLEVKAFRVQ---ALVLC 83

Query: 80  PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           PTRELA QVA    +  +   N+ V  L GG P + Q   LE GA V++ TPGRI +H  
Sbjct: 84  PTRELADQVAGEVRRLARGLGNVKVLTLCGGAPLKPQRDSLEHGAHVVVGTPGRIEEHLR 143

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           +G L +  +  LV+DEADRMLDMGF   I+ I    P +RQTLLFSAT  + ++ V+E  
Sbjct: 144 KGSLTLGALTTLVLDEADRMLDMGFQAAIETIVGQTPTSRQTLLFSATYGEGIRPVAERL 203

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           ++ P  +EV +        +H F    A    +   L++LL S    ++ ++FCN K+  
Sbjct: 204 MREPLAVEVASTHDDTSIRQHFF--RVADEEARLPALERLLLSHRP-ESSVVFCNTKRET 260

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +  +L   GFS  A++G+++Q  R +IL+ F   ++ ++VA+D+AARGLDI  +  VF
Sbjct: 261 QQVAEALNAAGFSALALNGDLEQPDRDRILAMFANKSVSVLVATDVAARGLDIDALDAVF 320

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           N+ +    E ++HRIGRTGRAG  G A TLVA+
Sbjct: 321 NYQIARELEVHVHRIGRTGRAGGRGVACTLVAE 353


>gi|302833349|ref|XP_002948238.1| hypothetical protein VOLCADRAFT_80160 [Volvox carteri f.
           nagariensis]
 gi|300266458|gb|EFJ50645.1| hypothetical protein VOLCADRAFT_80160 [Volvox carteri f.
           nagariensis]
          Length = 836

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 137/358 (38%), Positives = 204/358 (56%), Gaps = 8/358 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL LS  ++ AV   GY  PTPIQ   IPL L   D+CG A TG+GKTA+F LP L 
Sbjct: 175 SFADLNLSRPLLKAVEALGYKTPTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPFLE 234

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L + R  +     L+L PTRELA Q+    EK  +  ++TVAL++GG+    Q   L 
Sbjct: 235 RLLHRPRG-LAATYVLVLTPTRELAVQIHSMIEKLAQFTDVTVALIVGGLSLSVQAATLR 293

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  +V++ TPGR++DH  N   + + ++ +LV+DEADR+L+MGF   +  +    P  RQ
Sbjct: 294 KLPEVVVATPGRLIDHLRNSQSVGLEDLAVLVLDEADRLLEMGFRDEVMEVVRCAPKKRQ 353

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE--TIEHCFVATYAQYSKKCALLQQ 237
           T+LFSAT +D+++ +    L+ P R+  +   +  +  T E   +   A  + K A+   
Sbjct: 354 TMLFSATFSDQVRDLVSLSLKQPVRLAADAARAAPKLLTQEIVRLKGPAAAATKEAVCVA 413

Query: 238 LLQSQDTMKNGIIFCN--QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L     +    I+FC+  Q+ + + +   L K       +HGN+ Q +R++ L +F+ G 
Sbjct: 414 LCSRSFSSGRTIVFCSTKQRAHRLKILFGLAKLP-PAAELHGNMSQTARLESLESFRRGD 472

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
              ++A+D+AARGLDI  V  V N+D P + E Y+HRIGRT RAG  G A TLV   D
Sbjct: 473 TAYLLATDVAARGLDIQGVEVVVNYDAPRKLETYLHRIGRTARAGAAGVAVTLVEDGD 530


>gi|328708487|ref|XP_003243704.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Acyrthosiphon
           pisum]
          Length = 777

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 130/357 (36%), Positives = 204/357 (57%), Gaps = 4/357 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V+  VL  GY  PTPIQ KTIP+ L+  DV  +A+TG+GKTA F++PM   
Sbjct: 30  FQAMGLSFPVLKGVLKRGYKVPTPIQRKTIPIALENRDVVAMARTGSGKTACFLIPMFEK 89

Query: 63  LEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L +      R  R LIL PTRELA Q     ++ GK  NL  A+++GG P EAQ   +  
Sbjct: 90  LTQHTVNGHRGIRALILSPTRELAVQTLKFLKEIGKFTNLKSAVILGGDPMEAQFSTMHS 149

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR L       L +  I+ +V DEADR+ +MGF   +  I + +P TRQTL
Sbjct: 150 APDIVVATPGRFLHLCVEMSLKLPYIQYVVFDEADRLFEMGFGEQLTEIIARLPETRQTL 209

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL-LQQLLQ 240
           LFSAT+   L + +   L +P  I ++  S   +T+   F+    +      L L + + 
Sbjct: 210 LFSATLPKVLVQFARAGLSDPVLIRLDVESKIPDTLGLGFLNVRPEERDGALLCLLKYVV 269

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D+M   IIF   K +V  +   L+ Q      I+ ++D  +R    S F+ G+++ ++
Sbjct: 270 KPDSMT--IIFAPTKHHVDFIHLLLDFQDIPNTFIYSDLDPTARKINASKFQTGSVKTLI 327

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +D+AARG+DIP +  V N+  P +++ ++HR+GR  RAG+ G+A++LV ++++ ++
Sbjct: 328 TTDIAARGIDIPQLDTVINYTFPAKSKLFVHRVGRCARAGKVGQAYSLVTRDEMCYL 384


>gi|170088270|ref|XP_001875358.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650558|gb|EDR14799.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 691

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 134/405 (33%), Positives = 204/405 (50%), Gaps = 36/405 (8%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE-----KGRARVRMPR 74
           GY  P+PIQ + IP+ L   D+ GIA+TG+GKTA+FV+PML+ +          R   P 
Sbjct: 283 GYKDPSPIQRQAIPIGLLNRDIIGIAETGSGKTAAFVIPMLSFISGLPPFTDDIRHLGPY 342

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            LI+ PTRELA Q+     K+          ++GG+  E Q   L  GA+++I TPGR+ 
Sbjct: 343 ALIMAPTRELAQQIESEARKFASPLGFKCVSIVGGVSVEEQQFNLREGAEIIIATPGRLK 402

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF------------------ 176
           D   R  L+++    +V+DEADRM+ +GF   +  I   +P                   
Sbjct: 403 DVIERHVLVLSQCRYVVMDEADRMVHLGFEADLTFILDALPSETMQGEDLGEQMDVDGET 462

Query: 177 ------TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                 TR T LFSATM   +++++  +L+ P  I +       +T+E           K
Sbjct: 463 MIKKGRTRVTTLFSATMPAAVERLARKYLKKPAVITIGEAGRAVDTVEQRVEFVSGDEKK 522

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K  LL+ +L S       I+F NQKK    +   L + G++   +H   +Q  R   L +
Sbjct: 523 KQKLLE-ILNSGQYASPIIVFVNQKKTADMVAKDLSRAGWNAATLHSGKNQEQREASLQS 581

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
            + G   ++VA+DLA RG+D+ DV  V NF + N  E Y+HRIGRTGRAG+ G A T + 
Sbjct: 582 LRNGESDVLVATDLAGRGIDVQDVSLVINFQMANTIEAYVHRIGRTGRAGKLGTAITFLT 641

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
            +D + +  +++ I K        +S +   L K + AQH  +R+
Sbjct: 642 NDDDEVMYDLKQEISK------SPVSKVPAELAKHEAAQHKVSRE 680


>gi|149242263|ref|XP_001526437.1| hypothetical protein LELG_02995 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152032665|sp|A5E058|PRP5_LODEL RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|146450560|gb|EDK44816.1| hypothetical protein LELG_02995 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 994

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 139/378 (36%), Positives = 209/378 (55%), Gaps = 24/378 (6%)

Query: 8   LSPKVVCAVL--DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           L P+ V +V+  D G+ KP+PIQ + IP+VL   D+ G+A+TG+GKT S+VLPM+  ++ 
Sbjct: 393 LMPESVMSVIQNDLGFAKPSPIQCQAIPIVLSGRDMIGVAKTGSGKTLSYVLPMVRHIQD 452

Query: 66  ------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                 G      P  L+L PTRELA Q+     K+    +L V    GG   E Q  +L
Sbjct: 453 QLFPKPGEG----PIGLVLSPTRELALQIEKEILKFSSTMDLKVCCCYGGSNIENQISEL 508

Query: 120 ERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RG +V++ TPGR++D    N G++  +     +V+DEADRM DMGF P IQ I + +  
Sbjct: 509 KRGVNVIVATPGRLIDLLAANGGRITTLRRTTFVVLDEADRMFDMGFEPQIQKIFTQIRP 568

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH---CFVATYAQYSKKCA 233
            +QT+LFSAT   +L+++++  L NP  I V   S  A  I      F  T    + K  
Sbjct: 569 DKQTVLFSATFPRKLEQLAKKVLHNPIEIIVGGVSVVASEISQEIILFEDTDQLMNHKIQ 628

Query: 234 LLQQLLQSQ-DTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            L+ +L    D  KN    ++F  ++ +   L   L K+     AIHG  DQ  R   + 
Sbjct: 629 KLEDILSRFFDLGKNTGKVLVFVEKQTDADKLVSVLLKKAIPCIAIHGGKDQIDRKHAIR 688

Query: 290 NFK--EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
            F   +  I +++A+ +AARGLD+ ++  V NF+ P+  E+Y+HR+GRTGRAG+HG+A T
Sbjct: 689 EFSDDQSGINVLIATSIAARGLDVRNLDLVVNFEPPSHLEDYVHRVGRTGRAGKHGEAIT 748

Query: 348 LVAKEDIKHIDAIEKLIE 365
            V     K I  + K ++
Sbjct: 749 FVDNTQEKEISILVKALK 766


>gi|134057099|emb|CAK44387.1| unnamed protein product [Aspergillus niger]
          Length = 491

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 125/384 (32%), Positives = 209/384 (54%), Gaps = 14/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L +
Sbjct: 27  FEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQV 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 87  ID---TVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 144 QHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVV 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P R+ V     T E I+  F+A   +   +   C L   L 
Sbjct: 204 VSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTL- 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++
Sbjct: 263 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  
Sbjct: 319 ISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRD 378

Query: 360 IEKLIEKKVDW--LNGDLS-SLNP 380
           IE     ++D   +NG L+ S++P
Sbjct: 379 IELYYSTQIDEMPMNGMLTPSISP 402


>gi|152996051|ref|YP_001340886.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150836975|gb|ABR70951.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 417

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 124/373 (33%), Positives = 206/373 (55%), Gaps = 4/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+L L   +  A+ D G+  PT IQ + IP+ L   D+   A TGTGKT +F  P +
Sbjct: 17  MSFAELDLDFTIEQAISDLGFEAPTEIQEQAIPIALDGSDLLATAPTGTGKTIAFCAPAV 76

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             IL++       P+ LIL P+RELA Q+ +  E+  K+  +   L+IGG P+  Q ++L
Sbjct: 77  QHILDRDEQSTTAPKVLILAPSRELARQIFNVVEQLTKHTRIQSHLIIGGTPYGMQQQQL 136

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+L+ TPGR+++   +  L + ++   VIDEADRMLDMGF+  I  I   +P   Q
Sbjct: 137 SEPCDILVATPGRLVELDEKQWLDLTDVSYFVIDEADRMLDMGFVSAINCIAKELPKEHQ 196

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK--KCALLQQ 237
           TL+FSAT+  E      + L N +  ++    S+           Y   S+  K A+L+ 
Sbjct: 197 TLMFSATLEGEKMGRFASALLNSETQQIRLGESSRTVPSQIRQIAYRVDSEEHKEAVLKH 256

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL +Q+ ++  ++F + +++V      + K G     +HG + Q  R + +   K G +Q
Sbjct: 257 LL-TQERVQQAVLFVSNREHVDIWVQRIRKMGLMCDGLHGEMKQGDRSEHMKQMKRGRLQ 315

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A+RG+D+P++  V N  +P +A++YIHR GR  R G  G   +L+   D+  I
Sbjct: 316 VLVATDVASRGIDLPEINTVINLRLPRKADSYIHRAGRASREGEPGDCISLIDINDLPMI 375

Query: 358 DAIEKLIEKKVDW 370
           + I++ ++  + +
Sbjct: 376 EKIQRFMQANIKF 388


>gi|152976718|ref|YP_001376235.1| DEAD/DEAH box helicase domain-containing protein [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152025470|gb|ABS23240.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 436

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 130/384 (33%), Positives = 214/384 (55%), Gaps = 15/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ AV +  + +PT IQ K  P+V +   + G +QTG+GKT +++LP +  
Sbjct: 6   FTQYNFQPFLIDAVRELRFTEPTEIQKKIFPVVKKGVSIIGQSQTGSGKTHAYLLPTINQ 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           ++  R  V++   +I  PTRELA Q+     K  K       +T   LIGG   +   +K
Sbjct: 66  IDPKREEVQL---VITAPTRELAQQIYQEIIKLTKFCTEEQMITARCLIGGTDKQRSIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   +++ TPGRI D      L ++  E +++DEAD MLDMGFI  +  + + +P   
Sbjct: 123 LKKQPHIVVGTPGRIKDLIEEQALFVHTAETIIVDEADLMLDMGFIQDVDKVAARMPKNL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ- 237
           Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +  ++  K  +++  
Sbjct: 183 QMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPS--RHRNKIEIVKNM 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ Q  +   I+F N KK    + + L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 241 LLQFQPYL--AIVFTNTKKMAEEVANGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    D + I
Sbjct: 299 YIVATDLAARGIDIEGISHVINYEIPSDLDFFVHRVGRTARAGYSGIAVTIYDARDEEAI 358

Query: 358 DAIEK---LIEKKVDWLNGDLSSL 378
           D++EK   +  K V+  NG+   L
Sbjct: 359 DSLEKQRNITFKHVELRNGEWIDL 382


>gi|15601743|ref|NP_233374.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|153821094|ref|ZP_01973761.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae B33]
 gi|254850153|ref|ZP_05239503.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
 gi|9658432|gb|AAF96886.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126521468|gb|EAZ78691.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae B33]
 gi|254845858|gb|EET24272.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
          Length = 428

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 201/368 (54%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A L     +P+ IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 23  MSFSSLALSADLIQA-LPKAITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++     G    L    L GG+    Q   L 
Sbjct: 82  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALA 137

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 138 ENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 197 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N  +L   L K G     +HG+  Q  R   L+ FK GT Q+++
Sbjct: 256 HQ--WPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLI 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+HG A +LV   ++  ++A 
Sbjct: 314 ATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNAT 373

Query: 361 EKLIEKKV 368
             L ++++
Sbjct: 374 RTLTQREL 381


>gi|71028514|ref|XP_763900.1| small nuclear ribonucleoprotein [Theileria parva strain Muguga]
 gi|68350854|gb|EAN31617.1| small nuclear ribonucleoprotein, putative [Theileria parva]
          Length = 744

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 132/381 (34%), Positives = 205/381 (53%), Gaps = 36/381 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A+  L  +++ A+  AGY+KPTPIQ++ IP+ L+  D+ GIA TG+GKTA+FVLPMLT 
Sbjct: 331 WAESPLPWELLEAIKKAGYIKPTPIQMQAIPIALEMRDLIGIAVTGSGKTAAFVLPMLTY 390

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           ++K         +  P  L+L P+RELA Q+ D   K+    +     ++GG   E Q  
Sbjct: 391 VKKLPPLDDETSLDGPYALVLAPSRELALQIYDETVKFSAFCSCRSVAVVGGRNAETQAF 450

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L +G +++I TPGR+ D  +R   +++    +++DEADRM+DMGF   ++ I   +P T
Sbjct: 451 ELRKGCEIIIGTPGRVKDCLDRAYTVLSQCNYVILDEADRMIDMGFEDVLKYILDCIPST 510

Query: 178 ------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
                                   R T +FSATM   ++K+++ +L+ P  I +      
Sbjct: 511 NLKDRDESSALQQELSTKAGHRRYRITHMFSATMPPAVEKLTKRYLRAPAFISIGDVGGG 570

Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
             +I       + Q SKK   L++ L++ +     IIF N KKN   +   + K   S  
Sbjct: 571 KTSITQRL--DFVQESKKTRHLEETLETLEP--PIIIFVNLKKNTDVIAKHITKIAVS-- 624

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            +HG   Q SR   L+NFK G   ++VA+D+  RGLD+  +  V N+D+P   + Y HRI
Sbjct: 625 -LHGGKTQESREDALNNFKSGVYDILVATDVVGRGLDVEGIKCVINYDMPKDIQTYTHRI 683

Query: 334 GRTGRAGRHGKAFTLVAKEDI 354
           GRTGRAG  G + + V   D+
Sbjct: 684 GRTGRAGLKGLSISFVTDADV 704


>gi|296165192|ref|ZP_06847739.1| ATP-dependent RNA helicase RhlE [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295899381|gb|EFG78840.1| ATP-dependent RNA helicase RhlE [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 431

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 124/350 (35%), Positives = 187/350 (53%), Gaps = 4/350 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+SP +V A+   G  +P PIQI+T+P  L   DV G  +TG+GKT +F +P+++ 
Sbjct: 7   FAHLGVSPSLVDALAKGGVHRPFPIQIETLPDTLAGRDVLGRGKTGSGKTLAFSIPLVSR 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G  R   P  L+L PTRELA Q+A           L V  + GG+    Q   L+ G
Sbjct: 67  LDAGDRRPGKPTGLVLAPTRELATQIAATIAPLAAVRGLRVVTVFGGVSQHKQVAALKSG 126

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++  PGR+ D   +  + +  +++ VIDEAD + D+GF+P +  I +  P   Q LL
Sbjct: 127 VDIVVACPGRLDDLMKQKLVSLGAVQVTVIDEADHLADLGFLPTVTRILAATPAGGQRLL 186

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  + + FL NP    +  P S A  + H F       +KK   L   L + 
Sbjct: 187 FSATLDAAVDTLVKRFLTNPVTRSIAEPKSVAPAMTHHFFCVDGPQAKKE--LVHRLAAG 244

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D+ +  I+F   K     L   L + G +   +HGN+ Q  R + L+ F  G  +++VA+
Sbjct: 245 DSRR--ILFMRTKHQARKLARQLTQSGIASVELHGNLSQNVRDRNLAAFAAGDARVLVAT 302

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           D+AARG+ + D+  V + D P   + Y+HR GRT RAG  G   T+V  E
Sbjct: 303 DIAARGVHVDDIELVVHVDPPPEHKAYLHRSGRTARAGASGDVVTIVLPE 352


>gi|115437508|ref|XP_001217828.1| eukaryotic initiation factor 4A-12 [Aspergillus terreus NIH2624]
 gi|121734188|sp|Q0CAS8|FAL1_ASPTN RecName: Full=ATP-dependent RNA helicase fal1
 gi|114188643|gb|EAU30343.1| eukaryotic initiation factor 4A-12 [Aspergillus terreus NIH2624]
          Length = 399

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 121/379 (31%), Positives = 205/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L +
Sbjct: 27  FEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQV 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 87  ID---TVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 144 QHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVV 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P R+ V     T E I+  F+A   +   +   C L   L 
Sbjct: 204 VSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTL- 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++
Sbjct: 263 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  
Sbjct: 319 ISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRD 378

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 379 IELYYSTQIDEMPMNVADL 397


>gi|194212659|ref|XP_001499618.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
           [Equus caballus]
          Length = 874

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 138/376 (36%), Positives = 212/376 (56%), Gaps = 20/376 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P+L  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 63  LEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     R++   T     LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +
Sbjct: 131 L----YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE 186

Query: 118 KLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++    ++L+CTPGR+L H +        N+++LV+DEADR+LDMGF   +  I   +P 
Sbjct: 187 RIN-NINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPK 245

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCAL 234
            RQTLLFSAT T  ++ ++   L+NP+ + V+  +  ST  T+E  ++    Q  +K ++
Sbjct: 246 KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQ--QKISV 303

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL--EKQGFSVCAIHGNIDQRSRMKILSNFK 292
           L   L+S    K  I+F +  K V  L       + G S+ A+HG   Q  RM++ + F 
Sbjct: 304 LYSFLRSH-LKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFV 362

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                ++ A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   
Sbjct: 363 RKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPS 422

Query: 353 DIKHIDAIEKLIEKKV 368
           + K +  +++L++KKV
Sbjct: 423 EEKGM--VQQLLQKKV 436


>gi|71659539|ref|XP_821491.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70886872|gb|EAN99640.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 595

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 131/363 (36%), Positives = 208/363 (57%), Gaps = 15/363 (4%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--ILEKGRARVRMPRTLI 77
           G+  PT +Q +  P++L+  D+ G+A+TG+GKT +F++P L    +++       P  ++
Sbjct: 131 GFTSPTAVQAQAWPILLRGRDMVGVAKTGSGKTLAFMVPALAHIAMQEPLRTGDGPMVVV 190

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           L PTRELA Q+    +K    ++L    + GG P   Q   L  G  +L+ TPGR++D  
Sbjct: 191 LAPTRELAQQIEQETKKV-LPHDLRCGCVYGGAPKGPQLGILRNGVHILVATPGRLIDFL 249

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
              ++    +  LV+DEADRMLDMGF P ++ I   +   RQTL+FSAT   E+Q+++  
Sbjct: 250 EIKRVNFFRVTYLVLDEADRMLDMGFEPQVRAICGQIRPDRQTLMFSATWPKEIQRLAAE 309

Query: 198 FLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
           F ++  RI V +    A + +   F+ T  Q   K   L++LL +    +  +IFC  K+
Sbjct: 310 FQKDWIRINVGSTELLANKDVTQHFILT--QEHAKMEELKKLLANHRNQRV-LIFCKTKR 366

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
              +L   L++ G+   AIHG+ +QR R  IL  F++     +VA+D+AARGLDI ++  
Sbjct: 367 TADDLEWQLKRWGYDAMAIHGDKEQRQREFILERFRKDPRLCLVATDVAARGLDIKELET 426

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED-------IKHIDAIEKLIEKKV- 368
           V N+D P + ++Y+HRIGRTGRAG  G+AFTL+ K +       +  + AI    +++V 
Sbjct: 427 VINYDFPMQIDDYVHRIGRTGRAGAKGEAFTLITKREQQITPAVVTELIAIVDRAQQQVP 486

Query: 369 DWL 371
           DWL
Sbjct: 487 DWL 489


>gi|320163352|gb|EFW40251.1| DEAD box ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC
           30864]
          Length = 1073

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 124/339 (36%), Positives = 195/339 (57%), Gaps = 10/339 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML--TILEKGRARVRMPRTLIL 78
           + KPTPIQ + +P V+   D+  IA+TG+GKT +FVLPM+   + +   +    P  LIL
Sbjct: 390 FEKPTPIQAQAVPAVMSGRDLIAIAKTGSGKTLAFVLPMIRHILAQPPLSADDGPIGLIL 449

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF- 137
            PTRELA Q     +++     L    L GG     Q   L+RGA++++CTPGR++D   
Sbjct: 450 TPTRELAVQTYTECKRFAAPNQLRTVCLYGGSAITEQIADLKRGAEIIVCTPGRMIDMLT 509

Query: 138 -NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
            N G++  +  +  LV+DEADRM DMGF P +  I + +   RQT+LFSAT    ++ ++
Sbjct: 510 ANSGRVTNLRRVTYLVLDEADRMFDMGFEPQVMRIVNNIRPARQTVLFSATFPRSMETLA 569

Query: 196 ENFLQ-NPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
              L  +P +I V   S  ++ I +H  V   A+   +   L  + Q + ++   I+F  
Sbjct: 570 YKILHHSPLQIIVGGRSIVSKEIDQHVLVIPEAEKYLRLLELLGVWQEEGSV---IVFVE 626

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
           +++    L  SL   G+   ++H  +DQ  R + L  FK G ++L++A+ +AARGLD+ +
Sbjct: 627 RQEAADMLLKSLYASGYPCLSLHAGLDQGDREETLIAFKAGDVRLLIATSVAARGLDVKE 686

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +  V N+D PN  E+Y+HR+GRTGRAGR G ++T +  E
Sbjct: 687 LKLVVNYDAPNHYEDYVHRVGRTGRAGRKGTSYTFLTPE 725


>gi|328789449|ref|XP_003251275.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Apis
           mellifera]
          Length = 452

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 141/378 (37%), Positives = 207/378 (54%), Gaps = 19/378 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+L LS  +V      G   PTPIQ   IP +L   D  G A+TG+GKT +F LP+L
Sbjct: 1   MTFAELNLSSWLVQQCTFMGLKYPTPIQQNCIPRILAGTDCIGCAKTGSGKTLAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +    +     L+L PTRELA Q+AD F   GK+  L   +++GG+    Q  +L 
Sbjct: 61  QKLSEDPYGIF---ALVLTPTRELAFQIADQFSAIGKSIGLKKCIIVGGMDMVVQGLELS 117

Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   +++ TPGR+ DH        +  I+ LV+DEADR+L+  F   ++ I   +P  +Q
Sbjct: 118 KHPHIVVATPGRLADHLESCNTFSLKQIKFLVLDEADRLLEGYFDDQLKTIFEALPKQKQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC------A 233
            LLFSATMTD L KV ++ + N   I  +   S   T++        Q+   C      +
Sbjct: 178 ILLFSATMTDTLHKV-KHIVSNKAFIWESKDESGIATVKE-----LNQHYVLCPRDIRDS 231

Query: 234 LLQQLLQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            L +++++ +   KNG  IIF +  K+   L  +L   GF   A+H  + Q+ R+  L  
Sbjct: 232 FLVEVIRTFRANNKNGSIIIFTDTCKHCQILSMTLNDVGFKNVALHSMVKQKDRLAALVQ 291

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK   I++++A+D+AARGLDIP V  + N  +PN  + YIHR+GRT RAG+ G A TL+ 
Sbjct: 292 FKSNHIKILIATDVAARGLDIPTVELIINHIIPNVPKEYIHRVGRTARAGKSGMAITLIT 351

Query: 351 KEDIKHIDAIEKLIEKKV 368
             DIK + AIE  I  K+
Sbjct: 352 PHDIKLLHAIENTIGTKL 369


>gi|126324487|ref|XP_001378612.1| PREDICTED: similar to ATP-dependent RNA-helicase [Monodelphis
           domestica]
          Length = 895

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/359 (35%), Positives = 198/359 (55%), Gaps = 10/359 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F++PM   
Sbjct: 126 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFEK 185

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 186 LKAHSAQTGA-RALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHEN 244

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + +++  V DEADR+ +MGF   +Q I   +P   QT+L
Sbjct: 245 PDIIIATPGRLMHVAVEMNLKLQSVQYAVFDEADRLFEMGFAEQLQEIMGRLPEDHQTVL 304

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA----LLQQL 238
           FSAT+   L + +   L  P  I ++  +   E ++  F   + +   K A    +L+ L
Sbjct: 305 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTAFF--HVRRDDKPAVLLHVLRNL 362

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ QD     ++F   K     L   L  QG     I+  +DQ +R   L+ F  G    
Sbjct: 363 VRPQDQT---VVFVATKHEAEYLTELLTAQGVGCTHIYSALDQTARKINLARFVHGKCSA 419

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP + +V NF+ P +++ ++HR+GR  RAGR G A++LVA +++ ++
Sbjct: 420 LIVTDVAARGLDIPLLDNVVNFNFPAKSKLFLHRVGRVARAGRSGTAYSLVAPDEVPYV 478


>gi|289613420|emb|CBI59610.1| unnamed protein product [Sordaria macrospora]
          Length = 580

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 135/366 (36%), Positives = 190/366 (51%), Gaps = 29/366 (7%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK-------GRARVR 71
           A Y  PTPIQ  + P  L   DV GIA+TG+GKT +F LP +  L          R R  
Sbjct: 163 AAYTTPTPIQAASWPFSLSGRDVIGIAETGSGKTMAFSLPCVESLASRPKPKFNSRDRTA 222

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER--GADVLICT 129
            PR +I+ PTRELA Q             L+   + GG     Q   L +  G D++  T
Sbjct: 223 HPRAVIVSPTRELAMQTHAALSGLASLVGLSAVCIFGGSDKNEQRNLLYKNNGVDIITAT 282

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTRQTLLFSATM 187
           PGR+ D  + G + + N+   V+DEADRMLD GF   I+ I S  P    RQTL+F+AT 
Sbjct: 283 PGRLKDFLSEGSISLANVSFAVLDEADRMLDRGFSEDIKMILSECPPREKRQTLMFTATW 342

Query: 188 TDELQKVSENFLQNPKRIEV--------------NTPSSTAETIEHCFVATYAQYSKKCA 233
             ++QK++E+++ NP ++ +              N        IE   V       K+  
Sbjct: 343 PLDIQKLAESYMINPAQVTIGHRTRAGGDGEGNGNIELQANSRIEQK-VEVVDPRGKEFR 401

Query: 234 LLQQLLQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           L + L ++Q   +     ++FC  KK  V +   L ++G  V +IHG++ Q  R + L  
Sbjct: 402 LYEILKEAQKGSQKDDRILVFCLYKKEAVRVEQFLTRKGMKVASIHGDLRQDQRTRSLEA 461

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G+  ++VA+D+AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG+ GKA TL  
Sbjct: 462 FKSGSTSVLVATDVAARGLDIPEVKLVVNVTFPLTIEDYVHRIGRTGRAGKLGKAITLFT 521

Query: 351 KEDIKH 356
           + D  H
Sbjct: 522 EHDKAH 527


>gi|50289021|ref|XP_446940.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661294|sp|Q6FS54|DBP3_CANGA RecName: Full=ATP-dependent RNA helicase DBP3
 gi|49526249|emb|CAG59873.1| unnamed protein product [Candida glabrata]
          Length = 540

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 125/344 (36%), Positives = 202/344 (58%), Gaps = 7/344 (2%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
           A + KPTPIQ  + P +L   DV G+A+TG+GKT +F +P +  L    ++ +  + L++
Sbjct: 146 AKFPKPTPIQAVSWPYLLSGKDVIGVAETGSGKTFAFGVPAINNLLTSSSKPKGIKVLVI 205

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA+Q+ DN     +   +   ++ GG+P + Q +++ + ++V++ TPGR+LD   
Sbjct: 206 SPTRELASQIYDNLVLLTQKVGIDCCVVYGGVPKDDQRRQIAK-SNVVVATPGRLLDLIE 264

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQTLLFSATMTDELQKVSEN 197
            G + ++ ++ +V+DEADRML+ GF   I+ I        RQTL+F+AT   E+++++  
Sbjct: 265 EGSVDLSPVDYMVLDEADRMLEKGFEEDIKRIIGQTKSKDRQTLMFTATWPKEVRELAST 324

Query: 198 FLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG---IIFCN 253
           F++ P ++ + N    +A       V      SK+  LL  L + Q   K     +IF  
Sbjct: 325 FMKEPVKVSIGNRDELSANKRITQIVEVVDPRSKERKLLDLLKKYQSGPKKNDKVLIFAL 384

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            KK    +  +L   G+ V AIHG++ Q+ R + L+ FK G   L++A+D+AARGLDIP+
Sbjct: 385 YKKEASRVERNLNYNGYKVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPN 444

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           V  V N   P   E+Y+HRIGRTGRAG+ G A TL  +++ KH+
Sbjct: 445 VKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQE-KHL 487


>gi|300122867|emb|CBK23874.2| unnamed protein product [Blastocystis hominis]
          Length = 394

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 194/367 (52%), Gaps = 11/367 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +GL+P ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKT  F + +L  ++ 
Sbjct: 1   MGLNPDLLRGIYAYGFEKPSAIQQRAILPIIKGRDVIAQSQSGTGKTGVFCIGVLQNIDP 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
                +    LIL PTRELA Q        G    +     +GG       ++L+ G  V
Sbjct: 61  SLMETQ---ALILSPTRELAEQSQKVLLSIGDCMKVQCHACVGGKSLSDDIRRLDYGVQV 117

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           +  TPGR+ D  NR  L   NI+ILVIDE D ML+ GF   + +I   +P   Q +L SA
Sbjct: 118 VSGTPGRVYDMINRRHLRTRNIKILVIDEGDEMLNQGFKEQLYDIYRYLPPATQVVLVSA 177

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLLQSQ 242
           TM  E+  ++  F+  P +I V     T E I+  FVA   +   +   C L   L    
Sbjct: 178 TMPKEVLDMTSKFMNEPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYNNL---- 233

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L +  F+V ++HG++ Q+ R +I+  F+ G  ++++A+
Sbjct: 234 -TITQAVIFCNTRRKVEWLAAKLREANFTVSSMHGDMPQKERDRIMEEFRAGNSRVLIAT 292

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+  RGLD+  V  V N+D+PN  E YIHRIGR+GR GR G     V  EDI  +  IE+
Sbjct: 293 DVWGRGLDVQQVSLVINYDLPNSRELYIHRIGRSGRFGRKGVGINFVTNEDISVLRDIEQ 352

Query: 363 LIEKKVD 369
               ++D
Sbjct: 353 YYSTQID 359


>gi|295660379|ref|XP_002790746.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb01]
 gi|226281299|gb|EEH36865.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb01]
          Length = 408

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 121/370 (32%), Positives = 201/370 (54%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L +
Sbjct: 27  FEDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQV 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     +R  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 87  ID---TVLRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDHG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 144 QHVVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVV 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 204 VSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTL- 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++
Sbjct: 263 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 319 ISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRD 378

Query: 360 IEKLIEKKVD 369
           IE     ++D
Sbjct: 379 IELYYSTQID 388


>gi|297736137|emb|CBI24175.3| unnamed protein product [Vitis vinifera]
          Length = 489

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 144/420 (34%), Positives = 227/420 (54%), Gaps = 15/420 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+   V A  + G  +PTP+Q   IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 53  FADLGLAEWAVQACKELGMRRPTPVQHHCIPRILAGDDVLGLAQTGSGKTAAFALPILHR 112

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    V     L++ PTRELA Q+A+ F   G   +L  A+++GG+    Q + L + 
Sbjct: 113 LAEDPFGVF---ALVVTPTRELAYQLAEQFRALGSCLHLRCAVVVGGMDMINQAQTLMQR 169

Query: 123 ADVLICTPGRI---LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             V+I TPGR+   L+       +    + LV+DEADR+LD+GF   ++ +   +P  RQ
Sbjct: 170 PHVVIATPGRVKVLLEQNPDIPAVFARTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 229

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATMT +LQ + E         E      T E+++  ++  +   + K   L  +L
Sbjct: 230 TLLFSATMTSDLQTLLELSSNKAYFYEAYEGFKTVESLKQQYI--FVPKNVKDVYLLHIL 287

Query: 240 QSQDTM--KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              + M  ++ IIF +  ++   L   LE+    V A+H    Q  R+  +  FK G + 
Sbjct: 288 SKMEEMGIRSAIIFVSTCRSCHLLSLLLEELDLEVAALHSFKSQSLRLAAVHRFKSGQVP 347

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLDIP V  V N+D+P    +Y+HR+GRT RAGR G + ++V + D+  I
Sbjct: 348 ILLATDVASRGLDIPTVDLVVNYDIPRYPRDYVHRVGRTARAGRGGLSLSIVTQNDVDLI 407

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE ++ K++D  +     +   + K+       AR+   +     GF+ + K   +QK
Sbjct: 408 HEIEAVLGKQLDKFDCKEKEVLDNITKV-----YKARRVATMKMMDDGFEEKAKARKAQK 462


>gi|255559772|ref|XP_002520905.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223539871|gb|EEF41450.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 407

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 203/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++G+   ++  +   G+ KP+ IQ + +  +++  DV   AQ+GTGKT+   L    +
Sbjct: 36  FDEMGIKNDLLRGIYAYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTACQL 95

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     V+    LIL PTRELAAQ        G   N+     IGG       +KLE G
Sbjct: 96  VDTSSREVQ---ALILSPTRELAAQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEYG 152

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DE+D ML  GF   I ++   +P   Q +L
Sbjct: 153 VHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVL 212

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+ +E+ +++  F+ +P +I V     T E I+  FVA   +   +   C L   L 
Sbjct: 213 ISATLPNEILEMTSKFMTDPIKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 271

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   +    F+V ++HG++ Q+ R  I+  F+ GT +++
Sbjct: 272 ----TITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFQSGTTRVL 327

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +  
Sbjct: 328 ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRD 387

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +E+    ++D +  +++ L
Sbjct: 388 MEQYYSTQIDEMPMNVADL 406


>gi|145481077|ref|XP_001426561.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393636|emb|CAK59163.1| unnamed protein product [Paramecium tetraurelia]
          Length = 395

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 124/379 (32%), Positives = 210/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L  +++  +   G+ KP+ +Q + I  V+Q  DV   +Q+GTGKTA F L  L++
Sbjct: 24  FESMSLREELLRGIYAFGFNKPSAVQQRAIVPVIQGRDVIVQSQSGTGKTAVFSLSALSM 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     +R P+ LIL  TRELA Q A      G   N+++   IGG   +    KL+ G
Sbjct: 84  ID---LSIREPQVLILSNTRELAEQSAKVAMALGDFLNVSIHACIGGHSIQDDISKLQHG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R +L + ++++L++DEAD ML  GF   + +I   +P T Q ++
Sbjct: 141 VQIVSGTPGRVFDMIQRKELRVRHLKMLILDEADEMLTKGFKQQVYDIYRYLPPTTQNVV 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT---YAQYSKKCALLQQLL 239
            SAT+  E+  +++ F+ NP +I V     T E I+  F+       ++   C L   L 
Sbjct: 201 VSATLPQEILDMTDKFMNNPLKILVKRDELTLEGIKQFFIQVDKEEWKFDTLCDLYDTL- 259

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+       L + + +  F+V  ++G + Q+ R KI++ F++G  +++
Sbjct: 260 ----TITQAVIFCSTINKCEWLANKMREHEFTVVQMNGKMSQKERDKIMAEFRQGNKRVL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+  RGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V +ED++ +  
Sbjct: 316 IATDVWGRGLDVQQVSLVINYDLPNSRELYIHRIGRSGRFGRKGVAINFVKQEDVRLLRD 375

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 376 IEQYYSTQIDEMPMNVTDL 394


>gi|73955178|ref|XP_536583.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
           [Canis familiaris]
          Length = 871

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 139/376 (36%), Positives = 212/376 (56%), Gaps = 20/376 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P+L  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 63  LEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     R++   T     LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +
Sbjct: 131 L----YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE 186

Query: 118 KLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++    ++L+CTPGR+L H +        N+++LV+DEADR+LDMGF   +  I   +P 
Sbjct: 187 RIN-NINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPK 245

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCAL 234
            RQTLLFSAT T  ++ ++   L+NP+ I V+  +  ST  T+E  ++    Q  +K ++
Sbjct: 246 KRQTLLFSATQTKSVKDLARLSLKNPEYIWVHEKAKYSTPATLEQNYIVCELQ--QKISV 303

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL--EKQGFSVCAIHGNIDQRSRMKILSNFK 292
           L   L+S    K  I+F +  K V  L       + G S+ A+HG   Q  RM++ + F 
Sbjct: 304 LYSFLRSH-LKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFV 362

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                ++ A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   
Sbjct: 363 RKRSAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPS 422

Query: 353 DIKHIDAIEKLIEKKV 368
           + K +  +++L++KKV
Sbjct: 423 EEKGM--VQQLLQKKV 436


>gi|156720287|dbj|BAF76796.1| Vasa-related protein [Enchytraeus japonensis]
          Length = 990

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 218/392 (55%), Gaps = 30/392 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F ++  S  ++  +    Y KPTPIQ   +P+++   D+ G AQTG+GKTASF+LPMLT 
Sbjct: 519 FTEVKFSDVIMTNLRKTKYEKPTPIQKWAVPVIISGRDMMGCAQTGSGKTASFLLPMLTK 578

Query: 62  ---------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                     +E G A   MP  L+L PTREL  Q+     K+  +  +   +  GG+  
Sbjct: 579 MLGTGFEPPCVEDGCA---MPLMLVLAPTRELVLQIFHETRKFSFDTVVRAVVAYGGVSS 635

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-- 170
             Q K++ +GA ++I TPGR++D F + ++ +  ++ LV+DE DRMLDMGF   I +I  
Sbjct: 636 SYQEKEILKGAHIVIATPGRLIDFFGKKRINLCKLKYLVLDEVDRMLDMGFHTAIASILS 695

Query: 171 --TSLVPF--TRQTLLFSATMTDELQKVSENFLQNPK-RIEVNTPSSTAETIEHCFVATY 225
              S +P    RQT++FSAT+ +E+QK++   L+     I V    S    IE  +V   
Sbjct: 696 QGESGMPSVNNRQTVVFSATIPEEVQKLAAKLLREDYIFITVGCIGSANLDIEQ-YVLLM 754

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHS-LEKQGFSVCAIHGNIDQRSR 284
            Q +K+  LL+ ++Q +   K  II   ++K + +   + L +  F   +IHGN+ Q+ R
Sbjct: 755 EQENKRDKLLE-IVQKRGEDK--IIVSVEEKRMADFISAFLSQASFPTASIHGNLTQQER 811

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            K L +F+ G   ++VA+++AARGLDIP+V HV N+D+P   E Y+HRIGR GR G  GK
Sbjct: 812 EKALRDFRSGVSPILVATNVAARGLDIPEVKHVINYDMPPHIEEYVHRIGRPGRCGNTGK 871

Query: 345 AFTLVAKEDIKH-----IDAIEKLIEKKVDWL 371
           A      E   H     +  +   +++  +WL
Sbjct: 872 ATAFFVAEADNHLARSLVKVLSDALQEVPEWL 903


>gi|71987143|ref|NP_001022623.1| INitiation Factor family member (inf-1) [Caenorhabditis elegans]
 gi|124217|sp|P27639|IF4A_CAEEL RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Initiation factor 1
 gi|6700|emb|CAA78102.1| unnamed protein product [Caenorhabditis elegans]
 gi|532818|gb|AAA21170.1| Initiation factor protein 1, isoform a, confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 402

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 126/376 (33%), Positives = 199/376 (52%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L  +++  +   G+ KP+ IQ + I       DV   AQ+GTGKTA+F + +L  
Sbjct: 31  FDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQR 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     V+    L++ PTRELA Q+       G+  N+ +   IGG       +KLE G
Sbjct: 91  IDHEDPHVQ---ALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEAG 147

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D  NR  L  + I++ V+DEAD ML  GF   I  +   +P   Q +L
Sbjct: 148 IHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMPQDVQVVL 207

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  E+  V+  F++NP RI V     T E I   ++       K   L    L + 
Sbjct: 208 LSATMPSEVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCD--LYNV 265

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   +IFCN ++ V  L   + +  F+V  +HG++DQ  R  I+  F+ G+ ++++ +
Sbjct: 266 VNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITT 325

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V + D + +  IE 
Sbjct: 326 DILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEIES 385

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +   ++ L
Sbjct: 386 YYTTQIEEMPESIADL 401


>gi|268554368|ref|XP_002635171.1| Hypothetical protein CBG11408 [Caenorhabditis briggsae]
          Length = 565

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/349 (36%), Positives = 193/349 (55%), Gaps = 11/349 (3%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG--R 67
           P  V  +L   + KPT IQ  + P+ +   D+  IA+TG+GKT +F+LP L  + K   R
Sbjct: 138 PGQVHELLYGKFQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQPHR 197

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
            R   P  L+L PTRELA QV +    +  +  L +  L GG     Q + LERG D+ +
Sbjct: 198 QRGEGPSVLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLERGVDIAV 257

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+LD  + G   M     LV+DEADRMLDMGF P I+ I   +   RQTL+FSAT 
Sbjct: 258 ATPGRLLDFLDNGTTNMKRCSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMFSATW 317

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL--LQSQDTM 245
             E++ ++ +F ++   + V +    A       V    +++K+  L++ L  + +Q   
Sbjct: 318 PKEVRSLASDFQKDAAFLNVGSLELAANHNITQVVDVLEEHAKQAKLMELLNHIMNQKEC 377

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
           K  IIF   K+    L  ++ + G+    IHG+ +Q  R  +L  FK G + +++A+D+A
Sbjct: 378 KT-IIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKMPILLATDVA 436

Query: 306 ARGLD------IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           ARGL+      + D+  V N+D PN +E+Y+HRIGRTGR  + G A+T 
Sbjct: 437 ARGLEFWVQVHVDDIKFVINYDYPNNSEDYVHRIGRTGRRDKKGTAYTF 485


>gi|189207078|ref|XP_001939873.1| ATP-dependent RNA helicase fal1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|330936277|ref|XP_003305321.1| hypothetical protein PTT_18129 [Pyrenophora teres f. teres 0-1]
 gi|187975966|gb|EDU42592.1| ATP-dependent RNA helicase fal1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|311317725|gb|EFQ86604.1| hypothetical protein PTT_18129 [Pyrenophora teres f. teres 0-1]
          Length = 399

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 207/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   GY  P+ +Q + I  V +  D    AQ+GTGKTA+F + +L +
Sbjct: 27  FEAMHLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISILQV 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 87  IDTA---VRETQALVLSPTRELATQIQSVIMGLGDYMNVQCHACIGGTNVGEDIRKLDYG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 144 QHVVSGTPGRVADMIRRRNLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVV 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++ +++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 204 VSATLPYDVLEMTTKFMTDPVRILVKRDELTLEGLKQYFIAIEKEEWKFDTLCDLYDTL- 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG++ QR R  I+ +F++   +++
Sbjct: 263 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQRERDSIMQDFRQANSRVL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V ++D++ +  
Sbjct: 319 ISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTQDDVRILRD 378

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 379 IELYYSTQIDEMPMNVADL 397


>gi|299115354|emb|CBN74178.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 923

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/381 (33%), Positives = 205/381 (53%), Gaps = 13/381 (3%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL---- 63
           + PK V A+   G  K TP+Q  T   +L   D+ G ++TGTGKT +F LP++  L    
Sbjct: 263 VDPKTVAALKARGIEKFTPVQAITYDHILSGRDIIGKSRTGTGKTIAFGLPVIQHLGRFA 322

Query: 64  ----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               ++   R R PR L++ PTRELA QV    E  G  + L   +  GG  +  Q + L
Sbjct: 323 EDHQQRTYQRGRSPRFLVVCPTRELARQVYGELETLGSTFGLKADVFHGGAAYGPQMRSL 382

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI+DH  RG L ++++   V+DEAD ML+MGF   I+ I S V     
Sbjct: 383 SDGLDILVATPGRIMDHLQRGALDLSDVRHAVLDEADEMLNMGFADDIETIFSYVDVKEC 442

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           Q LLFSAT+   ++ ++  +  NP  ++      +  A T++H  +   +++  + ++L+
Sbjct: 443 QVLLFSATVPSWVRNIANKYTANPLTVDAVGKHVNKLATTVKHLSIEVSSRH--RSSMLE 500

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++       + I+F N K     L      +  +   +HG+I Q  R + +  F+    
Sbjct: 501 DIITYYGKGSHAIVFTNSKAECDELADGQTFKTLTSQVLHGDISQHQRDQTIKAFRAKGF 560

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+D+ D+  V  +  P   ++Y+HR GRTGRAGR G A TL A+ +I+ 
Sbjct: 561 QVLVATDVAARGIDVSDIDLVVQYRPPRDPDSYVHRSGRTGRAGRPGVAVTLYAENEIRD 620

Query: 357 IDAIEKLIEKKVDWLNGDLSS 377
           I  IE+ + +   +  G + S
Sbjct: 621 IRKIEQGVGQGFRFERGAVPS 641


>gi|296412374|ref|XP_002835899.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629696|emb|CAZ80056.1| unnamed protein product [Tuber melanosporum]
          Length = 547

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 135/364 (37%), Positives = 201/364 (55%), Gaps = 13/364 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP +
Sbjct: 126 VDFDEAGFPSYVMNEVKAQGFAAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAI 185

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                  +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   
Sbjct: 186 VHINAQPLLAPGDG----PIVLVLAPTRELAVQIQQEVAKFGKSSRIRNTCVYGGVPKGP 241

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L RG +VLI TPGR++D     K  +  +  LV+DEADRMLDMGF P I+ I   +
Sbjct: 242 QVRDLSRGVEVLIATPGRLIDMLETNKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQI 301

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQT ++SAT   E+++++ +FL +  ++ + +   +A       V     Y K+  L
Sbjct: 302 RPDRQTCMWSATWPKEVRQLASDFLNDFIQVNIGSLELSANHNIQQIVEVINDYDKRDRL 361

Query: 235 LQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           ++ L +  D  KN   +IF   K+   ++   L + G+   AIHG+  Q  R  +L+ FK
Sbjct: 362 IKHLEKVMDD-KNSKCLIFTGTKRTADDITRFLRQDGWPCLAIHGDKQQTERDWVLNEFK 420

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +MVA+D+A+RG+D+ ++ HV NFD PN +E+Y+HRIGRTGR G  G A T     
Sbjct: 421 TGKSPIMVATDVASRGIDVRNITHVINFDYPNNSEDYVHRIGRTGRGGARGTAITFFTTN 480

Query: 353 DIKH 356
           D K 
Sbjct: 481 DAKQ 484


>gi|159489242|ref|XP_001702606.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280628|gb|EDP06385.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 602

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 135/358 (37%), Positives = 199/358 (55%), Gaps = 7/358 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL +S  ++ AV   GY  PTPIQ   IPL L   D+CG A TG+GKTA+F LP L 
Sbjct: 150 SFADLNISRPLLKAVEALGYKSPTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPFLE 209

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L + R  +     L+L PTRELA Q+    EK  +  ++ VAL++GG+  + Q   L 
Sbjct: 210 RLLHRPRG-LAATYVLVLTPTRELAVQIHSMIEKLAQFTDINVALIVGGLSLQVQAITLR 268

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  +V++ TPGR++DH  N   + + ++ +LV+DEADR+L+MGF   +  +    P  RQ
Sbjct: 269 QSPEVVVATPGRLIDHLRNSQSVGLEDLAVLVLDEADRLLEMGFREEVAEVVRAAPRKRQ 328

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV---ATYAQYSKKCALLQ 236
           T+LFSAT  D+++ +    L+ P R+  +   +  + +    V      A  +K+   L 
Sbjct: 329 TMLFSATFNDQVRDLVALSLKQPVRLAADAARAAPKLLTQEIVRLKGPAAAATKEAVCLA 388

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA-IHGNIDQRSRMKILSNFKEGT 295
              +S       I+FC+ K     L       G    A +HGN+ Q +R++ L +F+ G 
Sbjct: 389 LCARSFGDRGRTIVFCSTKTKAHRLKILFGLAGLPPAAELHGNMSQTARLESLESFRRGD 448

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
              ++A+D+AARGLDI  V  V N+D P + E Y+HRIGRT RAG  G A TLV   D
Sbjct: 449 TAFLLATDVAARGLDIQGVEVVVNYDAPPKLETYLHRIGRTARAGAAGVAVTLVEDGD 506


>gi|91206663|sp|Q2UAK1|FAL1_ASPOR RecName: Full=ATP-dependent RNA helicase fal1
 gi|83771282|dbj|BAE61414.1| unnamed protein product [Aspergillus oryzae]
          Length = 398

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 121/379 (31%), Positives = 205/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L +
Sbjct: 26  FEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQV 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 86  ID---TVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYG 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 143 QHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVV 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P R+ V     T E I+  F+A   +   +   C L   L 
Sbjct: 203 VSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTL- 261

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++
Sbjct: 262 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVL 317

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  
Sbjct: 318 ISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRD 377

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 378 IELYYSTQIDEMPMNVADL 396


>gi|74693276|sp|Q755W0|FAL1_ASHGO RecName: Full=ATP-dependent RNA helicase FAL1
          Length = 398

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 125/382 (32%), Positives = 214/382 (56%), Gaps = 13/382 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+  P+ IQ + I  +++  DV   AQ+GTGKTA+F + ML +
Sbjct: 25  FESMKLQENLLRGIYGYGFEAPSAIQSRAITQIIRGKDVIAQAQSGTGKTATFTIGMLQV 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     ++    L+L PTRELAAQ++      G   N+      GG   +    K+ +G
Sbjct: 85  IDSSSKDLQ---ALVLSPTRELAAQISQVVRNLGDYMNVVALACTGGKALQQDISKVNKG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD--MGFIPYIQNITSLVPFTRQT 180
             V+  TPGR+LD   R  +   ++++LV+DEAD +L   +GF   + +I + +P + Q 
Sbjct: 142 CHVMSGTPGRVLDMIKRRIINTRHVKMLVLDEADELLSETLGFKQQLYDIFTKLPSSVQV 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT---YAQYSKKCALLQQ 237
           ++ SATM+  + +V++ F+ +P +I V     + E I+   +       ++   C L   
Sbjct: 202 VVVSATMSKVVLEVTKKFMSDPVKILVKRDEVSLEGIKQYHINVDKEEWKFDTLCDLYDS 261

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L     T+   +IFCN KK V  L H L +  F+V +IHG++ Q  R K++S+F+ G+ +
Sbjct: 262 L-----TITQCVIFCNTKKKVDWLSHKLIQNNFAVASIHGDMKQDDRDKVMSDFRSGSSR 316

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   + +E++  +
Sbjct: 317 VLISTDVWARGIDVQQVSLVINYDLPELLENYIHRIGRSGRFGRKGVAINFITREEVTKL 376

Query: 358 DAIEKLIEKKVDWLNGDLSSLN 379
            +IEK    K+  +  D+ SL+
Sbjct: 377 KSIEKHYSIKIKPMPADIDSLS 398


>gi|229510271|ref|ZP_04399751.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229517598|ref|ZP_04407043.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
 gi|229605408|ref|YP_002876112.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|229345634|gb|EEO10607.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
 gi|229352716|gb|EEO17656.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229371894|gb|ACQ62316.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
          Length = 416

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 201/368 (54%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A L     +P+ IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 11  MSFSSLALSADLIQA-LPKAITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 69

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++     G    L    L GG+    Q   L 
Sbjct: 70  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALA 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 126 ENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 185 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N  +L   L K G     +HG+  Q  R   L+ FK GT Q+++
Sbjct: 244 HQ--WPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLI 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+HG A +LV   ++  ++A 
Sbjct: 302 ATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNAT 361

Query: 361 EKLIEKKV 368
             L ++++
Sbjct: 362 RTLTQREL 369


>gi|302519357|ref|ZP_07271699.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
 gi|302428252|gb|EFL00068.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
          Length = 492

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/348 (36%), Positives = 189/348 (54%), Gaps = 7/348 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FADL + PK + A L A G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L 
Sbjct: 69  FADLDM-PKALEAALGAQGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLA 127

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                RA    P  L+L PTRELA QV D    Y ++  L +A ++GG+P   Q   L R
Sbjct: 128 RTAGKRAEAGQPLALVLVPTRELAQQVTDALTPYARSVRLRLATVVGGMPIGRQATALRR 187

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+VL+ TPGR+ D  +RG   ++ + + V+DEAD+M DMGF+P +  +   V    Q +
Sbjct: 188 GAEVLVATPGRLKDLIDRGHCRLDQVAVTVLDEADQMTDMGFMPQVTALLDQVCPGGQRM 247

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +  +   +L +P    V+  +    T+EH  +  +   + K A+  ++   
Sbjct: 248 LFSATLDRNVDLLVRRYLNDPVVHSVDPSAGAVTTMEHHVL--HVHGADKHAIATEIAAR 305

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   ++F + K  V  L   L + G    A+HG   Q  R + L  FK G + ++VA
Sbjct: 306 DGRV---LLFLDTKHAVDRLTEHLLRSGVRAAALHGGKSQPQRTRTLEQFKTGHVSVLVA 362

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +++AARG+ + D+  V N D P   ++Y+HR GRT RAGR G   TLV
Sbjct: 363 TNVAARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGRSGSVATLV 410


>gi|255955551|ref|XP_002568528.1| Pc21g15180 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590239|emb|CAP96415.1| Pc21g15180 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 416

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 125/385 (32%), Positives = 206/385 (53%), Gaps = 13/385 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  V   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F +  L I
Sbjct: 27  FEDMHLKESLLRGVYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFAISTLQI 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 87  ID---TVVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 144 QHVVSGTPGRVADMIRRRNLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVV 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P R+ V     T E I+  F+A   +   +   C L   L 
Sbjct: 204 VSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTL- 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++
Sbjct: 263 ----TITQAVIFCNTRRKVDWLADKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  
Sbjct: 319 ISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRD 378

Query: 360 IEKLIEKKVDW--LNGDLSSLNPPL 382
           IE     ++D   +NG + ++   L
Sbjct: 379 IELYYSTQIDEMPMNGGIVTVTSFL 403


>gi|259155174|ref|NP_001158829.1| ATP-dependent RNA helicase DDX54 [Salmo salar]
 gi|223647616|gb|ACN10566.1| ATP-dependent RNA helicase DDX54 [Salmo salar]
          Length = 875

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 129/356 (36%), Positives = 202/356 (56%), Gaps = 4/356 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   V+  GY  PTPIQ KTIP++L   D+  +A+TG+GKTA+F++PM   
Sbjct: 79  FQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVILDGKDMVAMARTGSGKTAAFLVPMFEK 138

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  +A+    R LIL PTRELA Q     ++ GK   L  AL++GG   + Q   L   
Sbjct: 139 LKVPQAQT-GARALILTPTRELALQTMKFTKELGKFTGLKTALILGGDRMDDQFAALHEN 197

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I   +P  RQTLL
Sbjct: 198 PDIIIGTPGRLMHVVMEMNLKLQSVEYVVFDEADRLFEMGFADQLQEIIRRLPDNRQTLL 257

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS- 241
           FSAT+   L + +   L  P  I ++  S  +E ++  F   + +   K ALL  LL++ 
Sbjct: 258 FSATLPKLLVEFARAGLTEPVLIRLDVDSKLSELLKLSFF--HLRMDDKPALLLHLLRNV 315

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  ++F   K +V  L   L  +G     I+  +DQ +R   +  F      +++ 
Sbjct: 316 AKPQEQTVVFVATKHHVEYLKELLSSEGVECAYIYSALDQTARKINIGKFVHRKAMVLIV 375

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +D+AARG+DIP + +V N++ P++A+ ++HR+GR  RAGR G A++LV  ++I  +
Sbjct: 376 TDVAARGIDIPLLDNVINYNFPSKAKLFLHRVGRVARAGRCGAAYSLVCTDEIPFV 431


>gi|163840630|ref|YP_001625035.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
 gi|162954106|gb|ABY23621.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
          Length = 631

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 129/363 (35%), Positives = 199/363 (54%), Gaps = 13/363 (3%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ LG+ PK + +VLDA G   P PIQ KT+P  L   DV G  +TG+GKT +F LP++ 
Sbjct: 76  FSSLGV-PKALVSVLDAQGIDAPFPIQAKTLPDSLGGRDVLGRGRTGSGKTLAFGLPLVA 134

Query: 62  IL-EKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L E+  A +R P     L+L PTRELA Q+    E   K   L   ++ GG+  + Q +
Sbjct: 135 RLAEREAAYMRKPNRPLGLVLAPTRELATQINATIEPLAKAMGLNTTVIYGGVSQQRQER 194

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G D++I  PGR+ D   +  + + ++EI V+DEAD M D+GF+P ++ +    P  
Sbjct: 195 ALKAGVDIVIACPGRLEDLMRQKLVSLESVEITVLDEADHMADLGFLPVVKRLLDTTPTQ 254

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q LLFSAT+ + + K+ + +L  P    V+ P +   T+EH  +A   Q  KK    Q 
Sbjct: 255 GQRLLFSATLDNGVDKIVQRYLSQPVTHSVDEPKAAVSTMEHHVLAVADQNVKK----QL 310

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++        ++F   K +   L  +L   G     +HGN+ Q +R + L+ F  G ++
Sbjct: 311 IVELAAGTGRRVLFMRTKHHARKLAKTLTDAGIPAVDLHGNLSQNARDRNLAEFSSGDVR 370

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE---DI 354
           ++VA+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   T+   E   D+
Sbjct: 371 VLVATDVAARGVHVDDVELVIHVDPPTAHKAYLHRSGRTARAGSDGTVVTISLPEQQSDV 430

Query: 355 KHI 357
           K +
Sbjct: 431 KKL 433


>gi|290890826|ref|ZP_06553893.1| hypothetical protein AWRIB429_1283 [Oenococcus oeni AWRIB429]
 gi|290479598|gb|EFD88255.1| hypothetical protein AWRIB429_1283 [Oenococcus oeni AWRIB429]
          Length = 454

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 131/370 (35%), Positives = 204/370 (55%), Gaps = 15/370 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L  ++V A+    + KPT +Q + IP ++   DV G +QTG+GKT +F+LP+   
Sbjct: 5   FGQFNLKTEIVKAIDGISFNKPTKVQKRIIPPIIAGRDVVGQSQTGSGKTHAFLLPIFNG 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--------NLTVALLIGGIPFEA 114
           L+     +   + +I  P+RELA Q+   F  + K+         +L +A  IGG     
Sbjct: 65  LDPS---LEETQAVITSPSRELAEQLYQAFRDFQKSLAAIDENFADLRIADYIGGTDRNK 121

Query: 115 QNKKLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           Q ++LER    + I TPGR+ D  ++  LL+N     V+DEAD  LDMGF+  +  I S 
Sbjct: 122 QIRQLERKQPQIAIGTPGRLKDFLSKNFLLVNQNRFFVVDEADMALDMGFLEDVDTIASA 181

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P   Q L+FSAT+ D+L    + +++NP   E+   +  A+TI++  +AT ++   K  
Sbjct: 182 MPDNLQMLVFSATIPDKLTPFLKRYMKNPLIEEIPVSTVVADTIDNYLLATKSK--DKNE 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           ++  LL  +++    ++F N K+ V  L H L+ QG     +HG I+ R R + +   K+
Sbjct: 240 VIFDLLTRKESYLT-LVFANTKERVHELAHFLDSQGLKAAEVHGGIEPRERRRTMKRIKK 298

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
              Q +VA+DLAARGLDI  V  V N D+P   E +IHR+GRTGR G  G A TL   ++
Sbjct: 299 QEFQYVVATDLAARGLDIQGVSEVINDDIPTDLEFFIHRVGRTGRNGLPGTAITLYGPDE 358

Query: 354 IKHIDAIEKL 363
              ++ +EKL
Sbjct: 359 EDKVEELEKL 368


>gi|168000743|ref|XP_001753075.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695774|gb|EDQ82116.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 793

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 133/366 (36%), Positives = 205/366 (56%), Gaps = 14/366 (3%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--IL 63
           LG+   V  A+   G  +  PIQ   +   +Q  D+ G A+TGTGKT +F +P++   I 
Sbjct: 142 LGIPDAVADALAKRGITQLFPIQRAVLEPAMQGRDLIGRAKTGTGKTLAFGIPIINNIIR 201

Query: 64  EKGRARV-----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           E    RV     R PR L+L PTRELA QV   F +      L+   + GG+   +Q + 
Sbjct: 202 ENEENRVARRSGRAPRALVLAPTRELAKQVEREFMESAPM--LSTICVYGGVAISSQQRL 259

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+ + TPGRI+D  NRG L +  +  LV+DEAD+ML +GF   ++ I   +P  R
Sbjct: 260 LTRGVDIAVGTPGRIIDLINRGSLRLQEVRFLVLDEADQMLAVGFEEDVEQILEQMPNQR 319

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST--AETIEHCFVATYAQYSKKCALLQ 236
           Q++LFSATM   ++K+S  +L +   I++   S    A+ I+   VAT  Q   K ++L 
Sbjct: 320 QSMLFSATMPTWVKKLSRKYLHDALTIDLVGESDEKLADRIKLYAVATVPQ--AKRSILN 377

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L+         I+F   K++  ++  ++ +      A+HG+I Q  R K L+ F+EG  
Sbjct: 378 DLIAVYGKGGKTIVFTQTKRDADDVATAMART-LGCEALHGDISQSQREKTLNAFREGNF 436

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLDIP+V  V ++++PN  E ++HR GRTGRAG+ G A  + +    + 
Sbjct: 437 SVLVATDVAARGLDIPNVDLVIHYEIPNDPETFVHRSGRTGRAGKDGTAILMYSDRQTRT 496

Query: 357 IDAIEK 362
           +  IE+
Sbjct: 497 MRLIER 502


>gi|146312704|ref|YP_001177778.1| ATP-dependent RNA helicase SrmB [Enterobacter sp. 638]
 gi|145319580|gb|ABP61727.1| DEAD/DEAH box helicase domain protein [Enterobacter sp. 638]
          Length = 442

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 209/370 (56%), Gaps = 6/370 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTLIL 78
           G+ +PT IQ   IP  L+  DV G A TGTGKTA+++LP+L  +++  R +   PR LIL
Sbjct: 23  GFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPVLQHLIDFPRKKSGPPRILIL 82

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QVA++  +     +L +A + GG+ +    +      D+++ T GR++ +  
Sbjct: 83  TPTRELAVQVAEHARELAAKTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLMQYIK 142

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQKVSEN 197
                   +E L++DEADRML++GF   I++I     + +QT+LFSAT+  D ++  +E 
Sbjct: 143 EENFDCRAVETLILDEADRMLELGFAQDIEHIAGETRWRKQTMLFSATLEGDAIKDFAER 202

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
            L++P  +   TPS+      H +      +  K  LL+ LL+  DT +  I+F  +++ 
Sbjct: 203 LLEDPAEVSA-TPSTRERKKIHQWYYRADNFEHKLELLKHLLKQDDTTRT-IVFVRKRER 260

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
           V  L   L   G   C + G++ Q  R + +    EG + ++VA+D+AARG+DIP+V HV
Sbjct: 261 VHELAAQLRSAGIDNCYLEGDMPQVKRTEGIKRLTEGRVNVLVATDVAARGIDIPEVSHV 320

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDL 375
            NFD+P   + Y+HRIGRTGRAG  G A +LV   D   +  + + IE+  K   ++   
Sbjct: 321 INFDMPRSGDTYLHRIGRTGRAGLKGTAISLVEAHDYLLLQKVGRYIEEPVKARVIDELR 380

Query: 376 SSLNPPLEKI 385
            +  PP EK+
Sbjct: 381 PTTRPPSEKM 390


>gi|328773329|gb|EGF83366.1| hypothetical protein BATDEDRAFT_8371 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 460

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 127/361 (35%), Positives = 205/361 (56%), Gaps = 7/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL P ++ ++       P+ IQ   IP +L   D+ G A+TG+GKTA+F LP+L  
Sbjct: 35  FESIGLRPWLIGSLKSISIRHPSEIQQACIPHILNGRDIIGGAKTGSGKTAAFALPILQK 94

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    V     L+L P RELA Q+A+ F   G   NL +++++GG+   +Q  +L + 
Sbjct: 95  LSEDPYGVF---ALVLTPARELAFQIAEQFRVLGTGINLKLSVVVGGMDMMSQALELSQK 151

Query: 123 ADVLICTPGRILDHF--NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             V+I TPGR++DH   +   +    I  LV+DEADR+LD  F   ++ I S +P  RQT
Sbjct: 152 PHVIIATPGRLVDHIRSSSNAIHFKRIRFLVMDEADRLLDDTFSDDLEGILSQLPQKRQT 211

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLF+ATMTDE++++  +    P   E     ST E ++  ++   +    + A L  +++
Sbjct: 212 LLFTATMTDEIKELQMSSKTLPFVYECAERYSTVEKLDQQYILVSSNV--RDAYLAHIVR 269

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              + K  IIF ++ +    L   L++ G    A+H  + Q  R+  L+ FK G + +++
Sbjct: 270 ESLSGKTMIIFASKCRTCETLRIMLKELGLKSTALHAQMPQNDRLGSLAKFKSGIVPILI 329

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ +RGLDIP V  V N+++P  A +YIHR+GRT RAG+ G + + V++ D+  I  I
Sbjct: 330 ATDVGSRGLDIPTVKVVINYELPADATDYIHRVGRTARAGQGGMSLSFVSERDVDIIHNI 389

Query: 361 E 361
           E
Sbjct: 390 E 390


>gi|324504798|gb|ADY42068.1| ATP-dependent RNA helicase DDX41 [Ascaris suum]
          Length = 657

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 132/359 (36%), Positives = 197/359 (54%), Gaps = 16/359 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++   P ++ ++ +   + PT IQ++ IP+VL   D+ GIA TG+GKT +F LP++  
Sbjct: 217 FIEMKFPPAIIRSLREKKIISPTVIQMQGIPVVLSGRDMIGIASTGSGKTLTFALPLVMF 276

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKY------GKNY-NLTVALLIGGI 110
             +    +       P  LI+ P+RELA Q+ D  E+       G  +  L V L IGG+
Sbjct: 277 CLEQEISLPFRHGEGPYGLIIVPSRELAKQIHDVIERIFESITIGSGFPRLRVGLCIGGL 336

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
           P   Q +  ERG  V + TPGR+ D  ++    +     LV+DEADRMLDMGF   I+ I
Sbjct: 337 PIGEQARVFERGVHVAVATPGRLSDLLSKKVFNLQICRYLVLDEADRMLDMGFEEEIRTI 396

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q  + + L   + I VN   + A ++       Y +  +
Sbjct: 397 FSFFKGQRQTLLFSATMPRKIQNFARSALV--RAIIVNVGRAGAASLNVLQEIEYVRADE 454

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K   +   LQ   T    +IF  +K +V N+   L  +G  V ++HG  DQ+ R   +  
Sbjct: 455 KLTRILDCLQK--TPPRVLIFAEKKSDVDNIYEYLLVKGVDVASLHGGKDQKDRHTGVDA 512

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           F+ G   ++VA+D+A++GLD  ++ HV NFD+P   ENY+HRIGRTGR+G+ G A T V
Sbjct: 513 FRRGEKDVLVATDVASKGLDFENIQHVINFDMPEDIENYVHRIGRTGRSGKKGMATTFV 571


>gi|307109393|gb|EFN57631.1| hypothetical protein CHLNCDRAFT_20835 [Chlorella variabilis]
          Length = 608

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 130/335 (38%), Positives = 188/335 (56%), Gaps = 16/335 (4%)

Query: 27  IQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG------RARVRMPRTLILEP 80
           IQ + +P +L+  D+ G A+TG GKT +FVLP++  L  G      RA  R P  ++L P
Sbjct: 29  IQAQCLPPLLEGQDLVGRARTGCGKTLAFVLPIVERLAGGQGAGGKRAFGRAPSVVVLAP 88

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TRELA QVA +FE Y K ++LT   L GG  +  Q   L RG DV+I TPGR+ DH  RG
Sbjct: 89  TRELAKQVAADFEYYAKAFSLTTVCLYGGTQYGPQEGMLRRGVDVVIGTPGRVKDHLERG 148

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNI--TSLVPFTRQTLLFSATMTDELQKVSENF 198
            L +N +   V+DE D ML+MGF+  ++ I    +   T QTLLFSAT+   ++ +++ F
Sbjct: 149 TLKLNQLRFRVLDECDEMLNMGFVEDVEKILNAGVDAATVQTLLFSATLPHWVKDITKRF 208

Query: 199 LQNPKRIEVNTPSS----TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           L+ P    V+   S     + ++ H  +  +  +S++  ++  L++        IIF   
Sbjct: 209 LK-PGFTTVDLVGSQKMKASTSVRHLLLPCH--WSQRSQIVPDLVKCYGVCGRTIIFTET 265

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K +   L  +L  + F   A+HG+I Q  R   L+ F+ G   ++VA+D+AARGLDI  V
Sbjct: 266 KNDANELSGTL-AESFGARALHGDIPQGQREVTLAGFRSGKFSVLVATDVAARGLDISGV 324

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
             V   + P   E YIHR GRTGRAG+ G   TLV
Sbjct: 325 ELVIQLEPPKDPETYIHRSGRTGRAGQTGICLTLV 359


>gi|145353388|ref|XP_001420996.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|145357383|ref|XP_001422899.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581232|gb|ABO99289.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583143|gb|ABP01258.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 452

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 124/343 (36%), Positives = 189/343 (55%), Gaps = 22/343 (6%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRARVRMP 73
           G   PTP Q +  P+ L   D+  +A+TG+GKT ++VLP +       +LEKG      P
Sbjct: 84  GLATPTPCQCQAWPIALSGRDLIAVAETGSGKTLAYVLPAIVHVNAQPVLEKGEG----P 139

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG-ADVLICTPGR 132
             L+L PTRELA+Q+     K+  +  +  A + GG+P   Q K L+ G +++ + TPGR
Sbjct: 140 IALVLAPTRELASQIELEVAKFAASSEIKHACVTGGVPKGPQIKALKSGGSEICVATPGR 199

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           ++D  + G+  +     +V+DEADRMLDMGF P I+ I +     RQTLLF+AT   E++
Sbjct: 200 LIDFLDGGQTNLRRTSFVVLDEADRMLDMGFEPQIRRIIAQTRCDRQTLLFTATWPVEVR 259

Query: 193 KVSENFLQN-PKRIEVNTP------SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           +V+  F++N P  + V         S   E I H      A+Y+K    L  +L+ +   
Sbjct: 260 EVAREFIRNDPVEMRVGGAGDGLLASKNVEQIVHIVEDAEAKYAK----LMDILEEEMDG 315

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
            + ++F   K  V  L   L  +G+    +HG+ +Q+ R  +L  F+     +M+++D+A
Sbjct: 316 SSILVFVETKALVDQLTRRLRSEGWPALGLHGDKEQKERDWVLEEFRAARSPIMISTDVA 375

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +RGLD+  V  V N D P   E Y+HRIGRTGRAGR GK+ T 
Sbjct: 376 SRGLDVVGVKLVVNHDFPKSVEEYVHRIGRTGRAGRKGKSHTF 418


>gi|270014204|gb|EFA10652.1| hypothetical protein TcasGA2_TC016289 [Tribolium castaneum]
          Length = 619

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/373 (34%), Positives = 203/373 (54%), Gaps = 22/373 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L   ++  + +    KPTPIQI+ IP VL   D+ GIA TG+GKT  FVLP++  
Sbjct: 180 FREMKLHEGIISGLKEKKIKKPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFVLPLIMF 239

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNY------NLTVALLIGGIP 111
             +   ++       P  LI+ P+RELA Q  D  + +  +        +  +L IGG+P
Sbjct: 240 CLEQEVKLPFIKNEGPYGLIICPSRELAKQTFDIIQHFCNSLRKHGMPEIRTSLAIGGVP 299

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
                  ++RG  +++ TPGR++D   +  + ++    L +DEADRM+D+GF   ++ I 
Sbjct: 300 VSEAVDVIQRGVHIMVATPGRLMDMLEKKIVKLSVCRYLCMDEADRMIDLGFEEDVRTIF 359

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  + + L  P  + +N   + A ++       Y +   K
Sbjct: 360 SYFNGQRQTLLFSATMPKKIQNFARSALVKP--VTINVGRAGAASMNVIQEVEYVKQEAK 417

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L + LQ   T    +IF  +K++V  +   L  +G    AIHG  DQ  R + +  F
Sbjct: 418 VVYLLECLQK--TPPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERSRSVEAF 475

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           ++    ++VA+D+A++GLD PD+ HV N+D+P+  ENY+HRIGRTGR+G+ G A T + K
Sbjct: 476 RKHEKDVLVATDVASKGLDFPDIQHVINYDMPDDVENYVHRIGRTGRSGKQGLATTFINK 535

Query: 352 E-------DIKHI 357
                   D+KH+
Sbjct: 536 SNDESVLLDLKHL 548


>gi|123474251|ref|XP_001320309.1| eukaryotic translation initiation factor [Trichomonas vaginalis G3]
 gi|121903112|gb|EAY08086.1| eukaryotic translation initiation factor, putative [Trichomonas
           vaginalis G3]
          Length = 424

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 136/380 (35%), Positives = 202/380 (53%), Gaps = 10/380 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  + L P ++  + + G+  P+ IQ  +I  +L    V   AQ+GTGKT +F + +L 
Sbjct: 41  DFDQMELKPLLLRGIYNYGFRGPSDIQSLSIKPILMNRCVIAQAQSGTGKTGAFAIGILN 100

Query: 62  ILEKGRARVRMPRT--LILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKK 118
                R     P T  L+L PTRELA Q+   F + G K  +L V L  GG        K
Sbjct: 101 -----RIDTTQPTTQALVLAPTRELATQIYYFFVEIGSKMADLKVELFKGGNSVADDQAK 155

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +    + + TPGR LD  ++G L   NI+I  IDEAD ML  GFI  I+ I   +    
Sbjct: 156 AQECPHIAVSTPGRALDLISKGYLRCENIQIACIDEADEMLGEGFISQIKEIFEYLNKDI 215

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT   E+  + + F+ +P +I V     T E I+  +V      +K   LL   
Sbjct: 216 QFLLFSATFPKEILSIIDQFMNDPVKILVKAEMLTLEGIKQFYVNVETSVNKFPTLLD-- 273

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +    +++  +IF N K+ V  L  S E   F++ AIHG ++Q  R +I+  F+ G  + 
Sbjct: 274 IYGSLSIQKAVIFANSKETVEYLQKSFEANEFNISAIHGGMEQAERDRIMHQFRTGNTRA 333

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V++DL ARG+D+  +  V NF++PN AENY+HRIGR+GR GR G A  +    D+  I 
Sbjct: 334 LVSTDLLARGIDVQQITLVINFELPNTAENYLHRIGRSGRYGRKGIAINICDASDMIRIK 393

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            IEK+ + ++  L  D++ L
Sbjct: 394 EIEKIYQTQIAELPADIADL 413


>gi|321249945|ref|XP_003191631.1| pre-mRNA splicing factor RNA helicase PRP28 [Cryptococcus gattii
           WM276]
 gi|317458098|gb|ADV19844.1| Pre-mRNA splicing factor RNA helicase PRP28, putative [Cryptococcus
           gattii WM276]
          Length = 737

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 131/419 (31%), Positives = 216/419 (51%), Gaps = 38/419 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ +  +  +++  + + GY +P+PIQ + IP+ +Q  D+ G+A+TG+GKTA+FV+PML 
Sbjct: 316 NWRESAIPSQILDIIEEIGYKEPSPIQRQAIPIGMQNRDLIGVAKTGSGKTAAFVIPMLD 375

Query: 62  ILE-----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +          R   P  LIL PTRELA Q+     K+          ++GG   E Q 
Sbjct: 376 YIGHLPPLNDDNRHLGPYALILAPTRELAQQIEAETRKFAIPLGYKCVSIVGGRSVEEQQ 435

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GA+++I TPGR+ D  ++  L+M+    +V+DEADRM+D+GF   +  I   +P 
Sbjct: 436 FALRDGAEIIIATPGRLKDMVDKSILVMSQCRYVVMDEADRMVDLGFEVDLNFILDSMPA 495

Query: 177 T---------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
           T                     R T LFSATM   +++++  +L  P  + +       +
Sbjct: 496 TFVKPDDAVALQPTTEGDWQGWRVTTLFSATMPPAVERLARKYLIKPATVVIGNAGEAVD 555

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
           T+E      +    KK  L++ +L++       I+F NQKK    +   +++ G S   +
Sbjct: 556 TVEQRVEFVHGDEKKKARLIE-ILRTIGLPPPMIVFVNQKKTADMVVKYVQQAGMSGVTL 614

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           H    Q  R   L   ++G I ++VA+DLA RG+D+PDV  V N+ + +  E Y+HRIGR
Sbjct: 615 HSGKSQEQREAALQALRDGEISVLVATDLAGRGIDVPDVSLVINWQMSDTIEKYVHRIGR 674

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           TGRAG+ G A T +  +D       E + + +++     +S +NP     ++A+H  AR
Sbjct: 675 TGRAGKTGVAITFLTNDD------DEVMYDLRIEVEKSKMSKMNP-----ELARHEAAR 722


>gi|307167913|gb|EFN61290.1| Probable ATP-dependent RNA helicase DDX49 [Camponotus floridanus]
          Length = 457

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 153/438 (34%), Positives = 229/438 (52%), Gaps = 20/438 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+DL L+  ++      G   PT IQ   IP +L   D  G A+TG+GKT +F LP+L 
Sbjct: 6   DFSDLKLNSWLLAQCDTMGLKNPTLIQQNCIPRILAGEDCIGCAKTGSGKTLAFALPILQ 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    +     L+L PTRELA Q+AD F   GK  NL   +++GG+    Q  +L +
Sbjct: 66  KLCEDPYGIF---ALVLTPTRELAFQIADQFAAIGKAINLKKCVVVGGMDMMVQGLELSK 122

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+ DH +      +  I+ LV+DEADR+L   F   ++ I + VP  +Q 
Sbjct: 123 RPHIVVATPGRLADHLDSCDTFSLQKIKFLVLDEADRLLGGHFDKQLKKIFAAVPKQKQV 182

Query: 181 LLFSATMTDELQKV-----SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
           LLFSATMTD L KV     S+ F+      E +   +T   ++  +V           L+
Sbjct: 183 LLFSATMTDALDKVKQIASSKVFIWEE---EDDAGIATVRELDQRYVLCPKDVLDS-FLV 238

Query: 236 QQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           + +   + T KNG  +IF +  K+   L   L   GF+  A+H  I Q+ R+  LS FK 
Sbjct: 239 EVIRTFRATNKNGSIMIFTDTCKHCQLLSMMLNDVGFTNMALHAMIKQKERLAALSKFKS 298

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             +Q+++A+D+AARGLDIP V  V N  +PN  + YIHR+GRT RAGR+G A +L+   D
Sbjct: 299 NHVQILIATDVAARGLDIPTVELVVNHIIPNVPKEYIHRVGRTARAGRNGMAISLITPND 358

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           IK +  IE  I  K+     D   +   L +I +     A++   I    T F  +K   
Sbjct: 359 IKLLHMIEDTIGTKLTEYKVDDKEIVTILTQISV-----AKREAEIRLDETDFYEKKMIN 413

Query: 414 SSQKSHIPLKESEKISKL 431
             +K  +  K+ ++I +L
Sbjct: 414 KRKKLILEGKDPDEIEEL 431


>gi|313213750|emb|CBY40630.1| unnamed protein product [Oikopleura dioica]
          Length = 416

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/329 (38%), Positives = 189/329 (57%), Gaps = 12/329 (3%)

Query: 45  AQTGTGKTASFVLPMLT-------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK 97
           AQTG+GKTA+F++PML+        + + ++R   P  L+L PTREL  Q+     K+  
Sbjct: 4   AQTGSGKTAAFLMPMLSNIFHNPGKIPRHQSRKAYPLALVLSPTRELTNQIYQEALKFAY 63

Query: 98  NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
              +   ++ GG     Q + L RG  +L+ TPGR+ D   RGK+ +     L +DEADR
Sbjct: 64  RSKVRPCVIYGGADVGEQLRDLSRGCHLLVATPGRLADFLERGKVGLEFCRFLCLDEADR 123

Query: 158 MLDMGFIPYIQNITSLV--PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
           MLDMGF P I+ I   V  P  RQTL+FSAT   ++Q ++ +FL+N   + V    ST+ 
Sbjct: 124 MLDMGFEPQIRRIIEKVIFPSDRQTLMFSATFPKQIQALASDFLENYIFLAVGRVGSTSA 183

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
            I   F   Y Q ++K   L +LL++   M   I+F   KK    L H L ++G+    I
Sbjct: 184 NITQRF--EYVQETEKVRKLCELLENGQEMLT-IVFTETKKGADYLDHFLHERGYQSTCI 240

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG+ +Q+ R + +  FK G   ++VA+ +AARGLDIP+V HV NFD+P+  + Y+HRIGR
Sbjct: 241 HGDRNQQEREEAVHLFKSGQTPILVATAVAARGLDIPNVRHVINFDLPSEIDEYVHRIGR 300

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           TGRAG  G A     +++ K  D + +L+
Sbjct: 301 TGRAGNTGWATAFYNEKNAKISDDLLQLL 329


>gi|238502855|ref|XP_002382661.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus flavus NRRL3357]
 gi|317027125|ref|XP_001400167.2| ATP-dependent RNA helicase FAL1 [Aspergillus niger CBS 513.88]
 gi|317148165|ref|XP_001822547.2| ATP-dependent RNA helicase FAL1 [Aspergillus oryzae RIB40]
 gi|152032452|sp|A5AAE5|FAL1_ASPNC RecName: Full=ATP-dependent RNA helicase fal1
 gi|220691471|gb|EED47819.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus flavus NRRL3357]
          Length = 399

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 121/379 (31%), Positives = 205/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L +
Sbjct: 27  FEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQV 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 87  ID---TVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 144 QHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVV 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P R+ V     T E I+  F+A   +   +   C L   L 
Sbjct: 204 VSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTL- 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++
Sbjct: 263 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  
Sbjct: 319 ISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRD 378

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 379 IELYYSTQIDEMPMNVADL 397


>gi|110639488|ref|YP_679697.1| inducible ATP-independent RNA helicase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282169|gb|ABG60355.1| inducible ATP-independent RNA helicase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 457

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 216/379 (56%), Gaps = 9/379 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPM 59
           M F+DLGL+  ++ ++ +     P+ IQ K IP++L    +V G+AQTGTGKTA+F LP 
Sbjct: 1   MTFSDLGLNAALLQSLSENNISSPSEIQQKAIPVILNSTKNVVGVAQTGTGKTAAFGLP- 59

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKK 118
             +L++    ++  + L+L PTREL  QVA +   + +    +    + GG   E Q KK
Sbjct: 60  --VLQQINPSLQQTQVLVLVPTRELGQQVAKDLFVFSRYIVRIHTEAVYGGKKIEEQIKK 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE    +L+ TPGR+LD   R  + ++N++ L++DEAD ML+MGF+P I  I  +   T 
Sbjct: 118 LETPKHILVATPGRLLDLIARKAVNLSNLKYLILDEADEMLNMGFLPDIDKIMKIAKPTA 177

Query: 179 QTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           + LLF++T+  EL+ +   +L  + + I +         IEH ++A   QY  K   L+ 
Sbjct: 178 RKLLFTSTLGSELKLIIREYLGTDIEEIRIKPQEYVNRNIEHQYLAY--QYGYKLEYLKA 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L      + GIIFC  +     L   L      V +++G+++Q  R K++  FK+  I+
Sbjct: 236 FLLKHSN-ERGIIFCRTQAAAKLLGQQLAGFDIVVGSLYGDLNQYERTKVMHAFKDKRIE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARG+D+ D+ +V ++ +P+    Y++R GRT RAG+ GK+  L+  +++ H 
Sbjct: 295 VLIATDIAARGIDVSDLNYVIHYHLPDNEAQYVNRSGRTARAGKKGKSIALLQSDELYHK 354

Query: 358 DAIEKLIEKKVDWLNGDLS 376
           D  E  +  + + +  D++
Sbjct: 355 DDFEDALRIRFEPIKLDIT 373


>gi|73965227|ref|XP_861717.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 9 [Canis
           familiaris]
          Length = 620

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 132/380 (34%), Positives = 205/380 (53%), Gaps = 20/380 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV     +Y +   L    + GG P   
Sbjct: 154 VHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP 209

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 270 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 329

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 330 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 388

Query: 293 EGTIQLMVASDLAARGL------DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            G   +++A+D+A+RGL      ++ DV  V N+D PN +E+YIHRIGRT R+ + G A+
Sbjct: 389 HGKAPILIATDVASRGLAFYKLVNVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAY 448

Query: 347 TLVAKEDIKHI-DAIEKLIE 365
           T     +IK + D I  L E
Sbjct: 449 TFFTPNNIKQVSDLISVLRE 468


>gi|50365342|ref|YP_053767.1| ATP-dependent RNA helicase [Mesoplasma florum L1]
 gi|50363898|gb|AAT75883.1| ATP-dependent RNA helicase [Mesoplasma florum L1]
          Length = 666

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/364 (35%), Positives = 207/364 (56%), Gaps = 9/364 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS KV+ A+  A + + T IQ + IPL L+  ++ G + TGTGKTASFVLP+L
Sbjct: 1   MTFKELQLSDKVLVALEKANFNEATEIQARAIPLFLEGKNIFGKSSTGTGKTASFVLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             +E  + RV+    +I+ PTRELA Q+ +    +G    NL +A LIGG     Q K+L
Sbjct: 61  EKIEPNKRRVQ---AVIMAPTRELAMQIVNQIRIFGSRIENLVIAPLIGGADMRDQIKRL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            + + +++ TPGR+ DH NR  L ++++  +++DEAD ML MGF   I  +   V    Q
Sbjct: 118 -KDSQIVVGTPGRVNDHLNRKTLKLDDVRTIILDEADEMLKMGFKNEIDALFERVSPDVQ 176

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSAT + ++ +++ +++     IE+         I + F+ T   +SK+  +++   
Sbjct: 177 IGLFSATTSPKVMQIANDYMNEYDVIEIENQIEVNANITNTFIFTKG-FSKEDLIVKVFK 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +   K  I+F N K +   +  +LE  G     I+G+  Q  R + ++ F+   I ++
Sbjct: 236 KHK--PKRAIVFSNTKNHTDKIADNLEAAGIRAIVINGDKRQSQRSRAIAKFRNNEISVL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI-KHID 358
           VA+D+ ARG+DI  V +V N+DV    E+++HRIGRTGR    G + T V  +++ + I 
Sbjct: 294 VATDVVARGIDITGVDYVINYDVSMEDEHFVHRIGRTGRNNTKGDSITFVQNQNVLRQIK 353

Query: 359 AIEK 362
            IEK
Sbjct: 354 GIEK 357


>gi|213408863|ref|XP_002175202.1| ATP-dependent RNA helicase dbp3 [Schizosaccharomyces japonicus
           yFS275]
 gi|212003249|gb|EEB08909.1| ATP-dependent RNA helicase dbp3 [Schizosaccharomyces japonicus
           yFS275]
          Length = 554

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 139/367 (37%), Positives = 204/367 (55%), Gaps = 16/367 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL L  K+   + +  + +PTPIQ  + P +L   DV GIA+TG+GKT +F +P L
Sbjct: 142 LSFDDLPLPDKLTAGLRN--FKQPTPIQAASWPYLLAGRDVVGIAETGSGKTVAFGIPAL 199

Query: 61  TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +   + + P  R L++ PTRELA Q  +N         L V  + GG P + +  +
Sbjct: 200 RYLNQ-LPKEKHPSIRVLVVSPTRELAIQTYENMRDLLAPLGLNVVAVYGGAP-KFEQAR 257

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--- 175
             R A V+I TPGR+LD  N G +  + +  LV+DEADRMLD GF   I+NI S  P   
Sbjct: 258 AAREASVIIGTPGRLLDLINDGAVNCSKVGYLVLDEADRMLDTGFEQDIRNIMSATPNPL 317

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
               RQT+ FSAT  + +++++  FL++P +I + +    A       V       +K  
Sbjct: 318 AGGQRQTVFFSATWPESVRELASTFLKDPVKITIGSDELAASHNITQIVEVIDDPRQKEY 377

Query: 234 LLQQLLQS--QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            L+ LL+   ++  KNG  ++F   KK    + ++L ++ F V  IHG++ Q +R++ L 
Sbjct: 378 RLEALLRKHLKEIGKNGKVLVFALYKKEAARVENTLRRK-FDVVGIHGDLSQAARIQALD 436

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK G   L+VA+D+AARGLDIP V  V N   P   E+YIHRIGRTGRA   G + TL 
Sbjct: 437 SFKSGRCNLLVATDVAARGLDIPQVQLVINLTFPLTIEDYIHRIGRTGRANTKGTSITLF 496

Query: 350 AKEDIKH 356
             +D  H
Sbjct: 497 TPQDKGH 503


>gi|58259441|ref|XP_567133.1| ATP-dependent RNA helicase ded1 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134107531|ref|XP_777650.1| hypothetical protein CNBA7700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687306|sp|Q5KN36|DED1_CRYNE RecName: Full=ATP-dependent RNA helicase ded1
 gi|50260344|gb|EAL23003.1| hypothetical protein CNBA7700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223270|gb|AAW41314.1| ATP-dependent RNA helicase ded1, putative [Cryptococcus neoformans
           var. neoformans JEC21]
          Length = 637

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 201/364 (55%), Gaps = 22/364 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  ++P ++  V  A Y  PTP+Q  +IP+V    D+   AQTG+GKT  F+ P+L+
Sbjct: 161 EFTNPPINPVLLENVKYARYATPTPVQKYSIPIVADGRDLMACAQTGSGKTGGFLFPILS 220

Query: 62  IL------------EKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105
            L            + G    R +   P  L+L PTREL +Q+ +   K+     +  A+
Sbjct: 221 ALFTYGPSTPPVEQDTGYGYRRTKKVYPTALVLAPTRELVSQIHEEARKFAYRSWVRPAV 280

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG    +Q + L+RG D+L  TPGR++D   RGK+ + N++ LV+DEADRMLDMGF P
Sbjct: 281 VYGGADIGSQMRALDRGCDLLSATPGRLVDLIERGKISLANVKYLVLDEADRMLDMGFEP 340

Query: 166 YIQNITSL--VP--FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
            I+ I     +P    RQTL+FSAT   E+Q ++ +FL+    + V    ST+E I    
Sbjct: 341 QIRRIVDEEDMPGVLERQTLMFSATFPREIQNLARSFLKEYIFLTVGRVGSTSENITQR- 399

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
              Y     K +LL  LL ++ +    ++F   K+    LC  L  +  +  +IHG+  Q
Sbjct: 400 -VEYVDDQDKRSLLLDLLLAEQSGGLILVFVETKRMADTLCDFLCSRRHNATSIHGDRTQ 458

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R R   L  FK G   ++VA+ +AARGLDIP+V HV  +D+PN    Y HRIGRTGRAG 
Sbjct: 459 REREAALYAFKSGRAPILVATAVAARGLDIPNVTHVILYDLPNDVAEYTHRIGRTGRAGN 518

Query: 342 HGKA 345
            G +
Sbjct: 519 VGTS 522


>gi|302557418|ref|ZP_07309760.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
 gi|302475036|gb|EFL38129.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
          Length = 485

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 124/347 (35%), Positives = 189/347 (54%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+  +++  +   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 59  FADLGMPGQLLAELGKQGVTVPFPIQGATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 118

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y ++  L +A ++GG+    Q   L  G
Sbjct: 119 TAGQRAEPRRPLGLVLVPTRELAQQVTDALTPYARSVGLRLATVVGGVSIGRQAGALRGG 178

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D  +RG   +N++ + V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 179 AEVVVATPGRLKDLIDRGDCGLNHVGVTVLDEADQMTDMGFMPQVTALLDQVRPEGQRML 238

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++   +L +P    V+  +    T+EH  +  + Q + K A   ++    
Sbjct: 239 FSATLDRNVDRLVRRYLTDPVVHSVDPSAGAVTTMEHHVL--HVQEADKHAATTEIAARD 296

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F + K  V  L  +L   G    A+HG   Q  R + L+ FK G + ++VA+
Sbjct: 297 GRV---IMFLDTKHAVDRLTRNLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVAT 353

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARG+ + D+  V N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 354 NVAARGIHVDDLDLVVNVDPPTDHKDYLHRAGRTARAGESGSVVTLV 400


>gi|142982571|sp|P0C2N7|DRS1_CHAGB RecName: Full=ATP-dependent RNA helicase DRS1
          Length = 795

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 134/361 (37%), Positives = 194/361 (53%), Gaps = 13/361 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  ++  +   G+ KPTPIQ KTIP+ L   DV G A TG+GKTA+FV+P+L  
Sbjct: 278 FQGMSLSRPILRGLTSVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTAAFVVPILER 337

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R ++L PTRELA Q      K   + ++   L +GG+  + Q  +L   
Sbjct: 338 LLYRPKKVPTTRVVVLTPTRELAIQCHSVATKLASHTDIKFCLAVGGLSLKVQEGELRLR 397

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     +  +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 398 PDVVIATPGRFIDHMRNSASFAVETVEILVLDEADRMLEDGFADELNEILTTLPKSRQTM 457

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMT  + K+    L  P RI V++   TA T+   FV     +  K+   L   LQ
Sbjct: 458 LFSATMTSTVDKLIRVGLNKPARIMVDSQKQTAVTLAQEFVRLRPGREEKRMGYLGPYLQ 517

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL--SNFKEGTIQL 298
                 +  +   ++    +  H           + G  + R+  K    S F++G +  
Sbjct: 518 DPVHRTSHYLLQAEEDCSPDPDH---------LRLAGAFEHRAPWKHEPGSAFRDGKVNY 568

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+DLA+RGLDI  +  V N++ P   E Y+HR+GRT RAGR G A TL A+ D K + 
Sbjct: 569 LLATDLASRGLDIKGIDTVINYEAPQSLEIYVHRVGRTARAGRSGVAITLAAEPDRKVVK 628

Query: 359 A 359
           A
Sbjct: 629 A 629


>gi|322796322|gb|EFZ18887.1| hypothetical protein SINV_00745 [Solenopsis invicta]
          Length = 420

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 144/386 (37%), Positives = 213/386 (55%), Gaps = 30/386 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  L L+  ++      G  KPTPIQ   IP +L   D  G A+TG+GKT +F LP+L 
Sbjct: 7   DFLHLKLNSWLLAQCKSMGLKKPTPIQENCIPRILMGEDCIGCAKTGSGKTLAFALPILQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    +     L+L PTRELA Q+AD F   GK  NL   +++GG+    Q  +L +
Sbjct: 67  KLCEDPYGIF---ALVLTPTRELAFQIADQFAAIGKVINLKKCVIVGGMDMMIQGLELSK 123

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+ DH +      +  I+ LV+DEADR+L   F   ++ I +++P  +Q 
Sbjct: 124 RPHIVVATPGRLADHLDSCNTFSLQKIKFLVLDEADRLLGGHFDKQLKKIFAVLPKQKQI 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL------ 234
           L FSATMTD L KV        K++  N   +  E  +   +AT  +  ++  L      
Sbjct: 184 LFFSATMTDTLDKV--------KKMACNKVFTWQEK-DDAGIATVKELDQRYVLCPKDVL 234

Query: 235 ---LQQLLQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
              L +++++ + T KNG  +IF +  KN   L  +L   GF+  A+H  + Q+ R+  L
Sbjct: 235 DSYLVEVIRTFRTTNKNGCIMIFTDTCKNCQLLSMTLNDVGFTNVALHAMLKQKERLVAL 294

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           + FK   IQ+++A+++AARGLDIP V  V N  +PN  + YIHR+GRT RAG +G A +L
Sbjct: 295 NKFKSNHIQILIATNVAARGLDIPAVQLVVNHVIPNVPKEYIHRVGRTARAGENGMAISL 354

Query: 349 VAKEDIKHIDAIE-----KLIEKKVD 369
           +   DIK + AIE     KL E KVD
Sbjct: 355 ITPHDIKLLHAIEDAIGTKLTEYKVD 380


>gi|157123872|ref|XP_001653950.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882852|gb|EAT47077.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 718

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 126/355 (35%), Positives = 197/355 (55%), Gaps = 11/355 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + G     +  +   G+ +PT IQ     + +   D+ GIA+TG+GKT +++LP L
Sbjct: 101 MQFGESGFPSVFLDEMGRQGFQEPTSIQAVGWSIAMSGRDMVGIAKTGSGKTLAYILPAL 160

Query: 61  TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +      +R   P  L+L PTRELA Q+      +G+  ++    + GG     Q   
Sbjct: 161 IHISNQPRLLRGDGPIALVLAPTRELAQQIQQVCNDFGRRMSIMNTCIFGGASKHPQADD 220

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG +++I TPGR++D    G   +     LV+DEADRMLDMGF P I+ I S +   R
Sbjct: 221 LRRGVEIVIATPGRLIDFLESGTTNLRRTTYLVLDEADRMLDMGFEPQIRKIISQIRPDR 280

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCA 233
           Q L++SAT   E++K++E FL+   +I + + +  A     + IE C    Y + ++   
Sbjct: 281 QVLMWSATWPKEIRKLAEEFLREYIQINIGSLNLAANENIMQIIECC--EEYEKETRLFK 338

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL +L Q  D+    IIF   K+ V  + + +++ G+    IHG+  Q+ R  +L+ F+ 
Sbjct: 339 LLTELSQQGDSKS--IIFVETKRKVDQITNVIKRNGWRCDGIHGDKTQKDRDYVLNTFRR 396

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
               ++VA+D+A+RGLD+ DV +V NFD PN  E+YIHRIGRTGR+   G ++T 
Sbjct: 397 LRSGILVATDVASRGLDVDDVKYVINFDFPNNTEDYIHRIGRTGRSTNKGTSYTF 451


>gi|9955400|dbj|BAB12216.1| vasa homolog [Ciona savignyi]
          Length = 688

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 127/356 (35%), Positives = 195/356 (54%), Gaps = 10/356 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL   V+  V  A Y +PTP+Q  +IP++    D+   AQTG+GKTA+F+LP+LT 
Sbjct: 233 FEVAGLPETVLANVKRANYERPTPVQKYSIPIINADRDLMACAQTGSGKTAAFLLPVLTK 292

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           L          +  + PR +++ PTREL  Q+     K+ +   +   +  GG     Q 
Sbjct: 293 LITNGLQSSQFSEKQTPRAIVVGPTRELIYQIFLEARKFSRGTVVRPVVAYGGTSMNHQI 352

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+RG  +LI TPGR++D  NRG + ++++E +++DEADRMLDMGF   I+ + S    
Sbjct: 353 RDLQRGCHILIATPGRLMDFINRGLVGLDHVEFVILDEADRMLDMGFETEIRKLASSPGM 412

Query: 177 ----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                R TL+FSAT  DE+Q+++ +FL+             A T     +    Q  K+ 
Sbjct: 413 PSKSDRHTLMFSATFPDEIQRLAHDFLREDFLFLTVGRVGGACTDVTQSIIQVDQDDKRA 472

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL+ +    +T    ++F   K+    L   L ++G    +IHG+  Q+ R + L +FK
Sbjct: 473 KLLELISDVAETRSRTLVFVETKRGADFLACMLSQEGCPTTSIHGDRLQQEREQALRDFK 532

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
                +++A+ +AARGLDIP V HV N+D+P   + Y+HRIGRTGR G  G+A T 
Sbjct: 533 SAVCPILIATSVAARGLDIPKVEHVINYDMPKEIDEYVHRIGRTGRCGNLGRATTF 588


>gi|322820447|gb|EFZ27062.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 595

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 131/363 (36%), Positives = 209/363 (57%), Gaps = 15/363 (4%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--ILEKGRARVRMPRTLI 77
           G+  PT +Q +  P++L+  D+ G+A+TG+GKT +F++P L    +++       P  ++
Sbjct: 131 GFTSPTAVQAQAWPILLRGRDMVGVAKTGSGKTLAFMVPALAHIAMQEPLRTGDGPMVVV 190

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           L PTRELA Q+    +K    ++L    + GG P   Q   L  G  +L+ TPGR++D  
Sbjct: 191 LAPTRELAQQIEQETKKV-LPHDLRCGCVYGGAPKGPQLGILRNGVHILVATPGRLIDFL 249

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
              ++    +  LV+DEADRMLDMGF P ++ I   +   RQTL+FSAT   E+Q+++  
Sbjct: 250 EIKRINFFRVTYLVLDEADRMLDMGFEPQVRAICGQIRPDRQTLMFSATWPKEIQRLAAE 309

Query: 198 FLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
           F ++  RI V +    A + +   F+ T  Q   K   L++LL ++   +  +IFC  K+
Sbjct: 310 FQKDWIRINVGSTELLANKDVTQHFILT--QEHAKMDELKKLLANRLNQRV-LIFCKTKR 366

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
              +L   L++ G+   AIHG+ +QR R  IL  F++     +VA+D+AARGLDI ++  
Sbjct: 367 TADDLEWQLKRWGYDAMAIHGDKEQRQREFILERFRKDPRLCLVATDVAARGLDIKELET 426

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED-------IKHIDAIEKLIEKKV- 368
           V N+D P + ++Y+HRIGRTGRAG  G+AFTL+ K +       +  + AI    +++V 
Sbjct: 427 VINYDFPMQIDDYVHRIGRTGRAGAKGEAFTLITKREKQITPAVVTELIAIVDRAQQQVP 486

Query: 369 DWL 371
           DWL
Sbjct: 487 DWL 489


>gi|115398415|ref|XP_001214799.1| hypothetical protein ATEG_05621 [Aspergillus terreus NIH2624]
 gi|121737771|sp|Q0CL13|DBP3_ASPTN RecName: Full=ATP-dependent RNA helicase dbp3
 gi|114192990|gb|EAU34690.1| hypothetical protein ATEG_05621 [Aspergillus terreus NIH2624]
          Length = 493

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 129/340 (37%), Positives = 191/340 (56%), Gaps = 8/340 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR---TLI 77
           +  PT IQ  T PL+    DV GIA+TG+GKT +F LP L  +E  + +   P     +I
Sbjct: 98  FKSPTSIQSATWPLLFGGRDVIGIAETGSGKTLAFGLPCLKKIEDSKKKKSKPYQPMAVI 157

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           + PTRELA Q+ D  +K+       VA + GG+  + Q + L + A++++ TPGR+ D  
Sbjct: 158 ISPTRELAMQIHDQLQKFAGPVGAKVACIFGGVRKDEQREVL-KTANIVVATPGRLKDLQ 216

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQTLLFSATMTDELQKVSE 196
           N G + +  +  LV+DEADRMLD GF   I++I   +P + RQT++F+AT    +++++ 
Sbjct: 217 NDGSVDLGKVRYLVLDEADRMLDKGFEQDIKDIIQPMPVSKRQTVMFTATWPPVVRELAS 276

Query: 197 NFLQNPKRIEVNTPSST---AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
            F+ +P  + +    S    A T     V     + K+  L+Q L Q Q   +  + FC 
Sbjct: 277 TFMSSPVTVTIGGDPSADPRANTRIKQVVEVVKPHEKEGRLVQLLKQHQRGAEKVLAFCL 336

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            KK    +   L+ +GF V  IHG++ Q+ R + L  FK G   ++VA+D+AARGLDIP 
Sbjct: 337 YKKEATRIERFLQSRGFKVAGIHGDLSQQERFRSLDAFKTGAATVLVATDVAARGLDIPA 396

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           V  V N   P   E+Y+HRIGRTGRAG  G A TL  + D
Sbjct: 397 VKLVINVTFPLTVEDYVHRIGRTGRAGAEGHAITLFTETD 436


>gi|221119958|ref|XP_002163544.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 53
           [Hydra magnipapillata]
          Length = 745

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 127/362 (35%), Positives = 203/362 (56%), Gaps = 7/362 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG--- 66
           P+++  +    + +P+PIQ +  P++L   D  GIAQTGTGKT +F+LP    ++     
Sbjct: 281 PEILSTIKSNNFTEPSPIQCQAWPVLLSGMDCIGIAQTGTGKTLAFLLPAFIHIDGQPIP 340

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTRELA Q+    +K+     +    + GG    AQ   + +G +++
Sbjct: 341 RDKRGGPSCLVLSPTRELAQQIEMEVKKF-HYRGIRSVCIYGGGDRSAQINLVRQGVEII 399

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D    G   + ++  LV+DEADRMLDMGF P I+ I   +   RQT++ SAT
Sbjct: 400 IGTPGRLNDLLMNGFFSVKSVTYLVLDEADRMLDMGFEPEIKKILLDIRPDRQTIMTSAT 459

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
               +Q++++ +L++P RI V +    A       V    Q+ K+  ++   + +     
Sbjct: 460 WPPGVQRMADKYLRDPIRINVGSLDLQACHSVSQLVEFIEQHEKQDRVMD-FISAMAPDG 518

Query: 247 NGIIFCNQKKNVVNLCHSLEKQG--FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             IIF  +K    ++  +L  +G    +  IHG+ DQ  R + L + K G  ++++A+D+
Sbjct: 519 KLIIFVGRKVTADDISSNLAMKGTNIGIQCIHGDRDQSDREQALEDMKTGAARVLIATDV 578

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           A+RGLDI D+ HV N+D P   E+Y+HRIGRTGRAGR G A T V +ED  H+  +  ++
Sbjct: 579 ASRGLDIKDLTHVLNYDFPRHIEDYVHRIGRTGRAGRSGCALTFVTREDWMHVAKLIPIM 638

Query: 365 EK 366
           E+
Sbjct: 639 EE 640


>gi|325115741|emb|CBZ51296.1| hypothetical protein NCLIV_043620 [Neospora caninum Liverpool]
          Length = 673

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 135/377 (35%), Positives = 200/377 (53%), Gaps = 17/377 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     ++  + + G   PT IQ++ IP +LQ  D+ GIA TG+GKT  F LPM+ 
Sbjct: 225 NFKDMRFPQPILKGLQERGISFPTQIQMQGIPAILQGRDIIGIAFTGSGKTLVFSLPMIM 284

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGI 110
              +   R        P  L++ P+RELA+Q  D    + K         L    +IGG 
Sbjct: 285 GALESETRAAYLPGEGPFGLVVCPSRELASQTNDVCSFFCKKLEEGGYPALRCLCVIGGC 344

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q +++ +G   ++ TPGR+ D  N+ +L +   E L  DEADRM+DMGF   ++N+
Sbjct: 345 SVVEQAREVRQGVHCIVATPGRLTDMLNKRRLSLQQCEYLCFDEADRMVDMGFEEEVRNV 404

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q+ +++ L +P  + VN   + A  ++      Y +   
Sbjct: 405 LDSFGHQRQTLLFSATMPRKIQEFAKSALIDP--LVVNVGRAGAANLDVVQEVEYVKQEN 462

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K   L   LQ   T    +IFC  KK+V ++   L  +G    A+HG + Q  R   +  
Sbjct: 463 KLPYLLHCLQK--TAPPVLIFCENKKDVDDIQEYLLLKGVDAAAVHGGLAQEERSDAVRA 520

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++V +D+A++GLD P + HV NFD+P   ENY+HRIGRTGR GR G A T V 
Sbjct: 521 FREGRKDVLVGTDVASKGLDFPAIQHVINFDMPKEIENYVHRIGRTGRCGRTGVATTFVN 580

Query: 351 K--EDIKHIDAIEKLIE 365
           K  E+   +D    LIE
Sbjct: 581 KNQEETVLLDLKALLIE 597


>gi|262403250|ref|ZP_06079810.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
 gi|262350749|gb|EEY99882.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
          Length = 412

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 200/368 (54%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  V+ A L     +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 1   MLFSSLALSADVIQA-LPKEITQPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++     G    L    L GG+    Q   L 
Sbjct: 60  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTHVGTPLELNTLCLCGGVDKTEQQNALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ T GR+ D    G L +N +  LV+DEADR+LDMGF P +Q + S     RQT
Sbjct: 116 ENPTILVATTGRLFDLTQSG-LSLNRVSTLVLDEADRLLDMGFWPQVQALASQTASVRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  +  P ++  N  +S  + ++        + SK  AL+  L Q
Sbjct: 175 VMCSATFSDDLKLKAQQLMHAPTQVSANPENSINQAVQETLYLVN-KGSKTQALVALLKQ 233

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK G+ Q+++
Sbjct: 234 HQ--WPQVLVFIGAKENADSLTKKLNKAGVVATALHGDKSQTEREAALAEFKNGSTQVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  A+ Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAQTYVHRVGRTARAGQQGIAISLVCHGEMDALNAI 351

Query: 361 EKLIEKKV 368
             L ++++
Sbjct: 352 RTLTQREL 359


>gi|301112965|ref|XP_002998253.1| eukaryotic initiation factor 4A-III, putative [Phytophthora
           infestans T30-4]
 gi|262112547|gb|EEY70599.1| eukaryotic initiation factor 4A-III, putative [Phytophthora
           infestans T30-4]
          Length = 406

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 199/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I   +Q  D+   +Q+GTGKTA F + +L  
Sbjct: 35  FEAMGLKEDLLRGIYSYGFEKPSAIQQRAIKPAIQGRDLIAQSQSGTGKTAVFSISILQS 94

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+      +    L++ PTRELA Q        G   N+     IGG       ++L+ G
Sbjct: 95  LDTSSNETQ---ALVVSPTRELAEQTQKVVLALGDFMNVQCHACIGGKSVGEDIRRLDFG 151

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGRI D   R  L   NI++LVIDEAD ML+ GF   I +I   +P + Q LL
Sbjct: 152 VQVVSGTPGRIFDMIRRRNLRTRNIKMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVLL 211

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SATM  E+  ++  F+  P ++ V     T E I+  FVA   +   +   C L   L 
Sbjct: 212 VSATMPQEVLDLTRKFMNEPVKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL- 270

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V A+HG++ Q+ R  I+  F+ G  +++
Sbjct: 271 ----TITQAVIFCNTKRKVDWLTSKMREANFTVSAMHGDMPQKERDAIMQEFRSGGSRVL 326

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+  RGLD+  V  V  +D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 327 ITTDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKDDDIRILRD 386

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 387 IEQYYSTQIDEMPMNVADL 405


>gi|237808150|ref|YP_002892590.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237500411|gb|ACQ93004.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 468

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 146/443 (32%), Positives = 230/443 (51%), Gaps = 28/443 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+L +  ++  A+    Y + T +Q +TIP  L   D+   ++TG+GKT +++LP++
Sbjct: 1   MRFAELTMHKRLKEAMAHLDYTEMTEVQAQTIPYALIGRDLAVASKTGSGKTLAYLLPLM 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L   RA   R PR LIL PTRELA QV            +  +L++GG  F  Q K L
Sbjct: 61  HRLLTSRALSTRGPRALILAPTRELAKQVYAQLRFLVAGTQVHCSLVLGGENFNDQIKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-R 178
            +  ++L+ TPGR+L+H      L + +EILV+DEADRMLD+GF   ++ I S      R
Sbjct: 121 RKTPEILVATPGRLLNHLTARSFLFDGVEILVLDEADRMLDLGFADALKAIHSAASHRLR 180

Query: 179 QTLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QT LFSAT+ ++ ++ +S   L+ P+ I +    +    I   F         K ALL+ 
Sbjct: 181 QTWLFSATLNNQSVEMLSGYILKAPQSISIGEMHAIHADINEVF-HLCDHLDHKQALLKH 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL SQ   +  I+F   +++   L     +      A+ G++ Q  R +++  F  G  +
Sbjct: 240 LL-SQPDYQQAIVFLATREDTERLAKQYSELNIPALALSGDMKQAQRNQVIDQFSRGHAK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++  +D+AARGLD+  V  V NFD+P   E YIHRIGRTGRAG  G A +L++ +D    
Sbjct: 299 VLFTTDVAARGLDLLHVSLVVNFDMPKLPEEYIHRIGRTGRAGNQGNAVSLISPKDWVSF 358

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             +  L  ++V +      ++ P LE          R    + QK+T F       S + 
Sbjct: 359 QGLMALQRREVTF------TVIPGLE---------GRFKGVLAQKNTKF-------SGKG 396

Query: 418 SHIPLKESEKISKLQQDIQENDA 440
           +H PL E++  ++ ++   +N A
Sbjct: 397 AH-PLAEAKAAAQGKRSFNKNTA 418


>gi|321250272|ref|XP_003191751.1| ATP-dependent RNA helicase ded1 [Cryptococcus gattii WM276]
 gi|317458218|gb|ADV19964.1| ATP-dependent RNA helicase ded1, putative [Cryptococcus gattii
           WM276]
          Length = 644

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 201/364 (55%), Gaps = 22/364 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  ++P ++  V  A Y  PTP+Q  +IP+V    D+   AQTG+GKT  F+ P+L+
Sbjct: 161 EFTNPPINPVLLENVKYARYTTPTPVQKYSIPIVADGRDLMACAQTGSGKTGGFLFPILS 220

Query: 62  IL------------EKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105
            L            + G    R +   P  L+L PTREL +Q+ +   K+     +  A+
Sbjct: 221 ALFTYGPSAPPVEQDTGYGYRRTKKVYPTALVLAPTRELVSQIHEEARKFAYRSWVRPAV 280

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG    +Q + L+RG D+L  TPGR++D   RGK+ + N++ LV+DEADRMLDMGF P
Sbjct: 281 VYGGADIGSQMRALDRGCDLLSATPGRLVDLIERGKISLANVKYLVLDEADRMLDMGFEP 340

Query: 166 YIQNITSL--VP--FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
            I+ I     +P    RQTL+FSAT   E+Q ++ +FL+    + V    ST+E I    
Sbjct: 341 QIRRIVDEEDMPGVLDRQTLMFSATFPREIQNLARSFLKEYIFLTVGRVGSTSENITQR- 399

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
              Y     K +LL  LL ++ +    ++F   K+    LC  L  +  +  +IHG+  Q
Sbjct: 400 -VEYVDDQDKRSLLLDLLLAEQSGGLILVFVETKRMADTLCDFLCSRRHNATSIHGDRTQ 458

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R R   L  FK G   ++VA+ +AARGLDIP+V HV  +D+PN    Y HRIGRTGRAG 
Sbjct: 459 REREAALYAFKSGRAPILVATAVAARGLDIPNVTHVILYDLPNDVAEYTHRIGRTGRAGN 518

Query: 342 HGKA 345
            G +
Sbjct: 519 VGTS 522


>gi|67522354|ref|XP_659238.1| hypothetical protein AN1634.2 [Aspergillus nidulans FGSC A4]
 gi|40745598|gb|EAA64754.1| hypothetical protein AN1634.2 [Aspergillus nidulans FGSC A4]
          Length = 767

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 130/429 (30%), Positives = 221/429 (51%), Gaps = 40/429 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + GL  +++  V   GY +PTPIQ   IP+ +Q  D+ G+A TG+       LP +  
Sbjct: 348 WDESGLPKRLLELVDRVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGS------ELPRIDE 401

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E    +   P  ++L PTRELA Q+    +K+ +     V  ++GG  FE Q   L  G
Sbjct: 402 FEW--RKNDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEEQAYSLRNG 459

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177
           A+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +P T     
Sbjct: 460 AEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPD 519

Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
                               RQT++++ATM   +++++  +L+ P  + + +     +T+
Sbjct: 520 TEEAEDSSAMSRHLGSKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVDTV 579

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
           E   V   A   K+   L ++L S D     I+F N K+N   +   +++ GFS   +HG
Sbjct: 580 EQR-VEMIAGEDKRKKRLGEILSSGDFRPPIIVFVNIKRNCDAIAREIKQWGFSSVTLHG 638

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           +  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++    E+Y HRIGRTG
Sbjct: 639 SKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVINFNMATSIESYTHRIGRTG 698

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           RAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ    R   
Sbjct: 699 RAGKSGVAITFLGNEDADVMYDLKQML------IKSPISRVPEELRKHEAAQSKPTRGAG 752

Query: 398 PIPQKSTGF 406
              ++++GF
Sbjct: 753 KKIEEASGF 761


>gi|323698575|ref|ZP_08110487.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. ND132]
 gi|323458507|gb|EGB14372.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
           ND132]
          Length = 645

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 122/343 (35%), Positives = 196/343 (57%), Gaps = 8/343 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L  K+  A   AG+ +  P+Q + IP +L   DV   A+TG+GKT +FVLP++  L+  R
Sbjct: 27  LPEKLRQACDRAGWDRLMPVQERAIPFLLDNQDVMVQARTGSGKTGAFVLPLMEKLDPSR 86

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
              +    L++ PTRELA QVA        + NL V  + GG+ ++ Q      GA++++
Sbjct: 87  HTCQ---ALVMVPTRELAKQVAQEARTLAGD-NLRVVAVYGGVGYKEQLDAFREGANLVV 142

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQTLLFSAT 186
            TPGRILDH  R  L ++++ +++ DEADRML +GF P +  +   +P       +FSAT
Sbjct: 143 GTPGRILDHLMRRNLTLDDLRVVIFDEADRMLSVGFYPDMVEVKRYLPRNIDGAYMFSAT 202

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
               + +++E F+  P+ + +++       I H FV   A   ++   L +L++ ++   
Sbjct: 203 FPPSVLRLAEEFMVKPEFLSLSSDEENVSAIAHQFVEVPAMGKERK--LIKLIELENPT- 259

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + +IFCN K+NV      L + GF    +  ++ Q  R  +++  KEG ++ +VA+D+AA
Sbjct: 260 SALIFCNTKRNVEFTAALLSQFGFDAEGLTSDLTQNKREALMARIKEGKLRFLVATDVAA 319

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           RG+DIP++ HVF  + P   E+Y+HR GRTGRAG  G A TLV
Sbjct: 320 RGIDIPELSHVFMMEPPEDPESYVHRAGRTGRAGATGTAITLV 362


>gi|254571423|ref|XP_002492821.1| Translation initiation factor eIF4A, identical to Tif1p [Pichia
           pastoris GS115]
 gi|238032619|emb|CAY70642.1| Translation initiation factor eIF4A, identical to Tif1p [Pichia
           pastoris GS115]
          Length = 403

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 138/377 (36%), Positives = 209/377 (55%), Gaps = 7/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L  +++ AV   GY  P+ IQ + I  ++   DV   AQ+GTGKTA+F +  L  
Sbjct: 24  FDELNLKEQILRAVFAYGYEFPSAIQSRAILPIVAGRDVLAQAQSGTGKTATFAISALQR 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++   +++  + LIL PTRELA Q+       G + N++V   IGG+      K    G
Sbjct: 84  LDE---KLKAAQVLILAPTRELALQIKKVVLALGMHLNISVHACIGGVDPALDVKAFNSG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ D   RG     N++++++DEAD ML  GF   I  + +L+P T Q +L
Sbjct: 141 VQIVVGTPGRVQDMIERGAFRTENVKMVILDEADEMLSTGFKEQIYTLFTLLPSTTQVVL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQLLQS 241
            SATM  E+ +V+  F+ NP RI V     T E I+  +V     QY   C  L  L  S
Sbjct: 201 LSATMPQEVLEVTTKFMNNPIRILVKKDQLTLEGIKQFYVDVGEEQYKFDC--LCDLYDS 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   L  Q F+V AIH  + Q  R  I+  F+ G+ +++++
Sbjct: 259 I-SVTQAVIFCNTRRKVEELTERLTAQKFTVSAIHSELSQTERDTIMQEFRTGSSRILIS 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 318 TDLLARGIDVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGVAINFVTSKDVEMMKEIE 377

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    ++D L   ++ L
Sbjct: 378 KFYSTQIDELPSSITDL 394


>gi|225462242|ref|XP_002263207.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 582

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 146/421 (34%), Positives = 228/421 (54%), Gaps = 17/421 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+   V A  + G  +PTP+Q   IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 146 FADLGLAEWAVQACKELGMRRPTPVQHHCIPRILAGDDVLGLAQTGSGKTAAFALPILHR 205

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    V     L++ PTRELA Q+A+ F   G   +L  A+++GG+    Q + L + 
Sbjct: 206 LAEDPFGVF---ALVVTPTRELAYQLAEQFRALGSCLHLRCAVVVGGMDMINQAQTLMQR 262

Query: 123 ADVLICTPGRI---LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             V+I TPGR+   L+       +    + LV+DEADR+LD+GF   ++ +   +P  RQ
Sbjct: 263 PHVVIATPGRVKVLLEQNPDIPAVFARTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 322

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATMT +LQ + E         E      T E+++  ++  +   + K   L  +L
Sbjct: 323 TLLFSATMTSDLQTLLELSSNKAYFYEAYEGFKTVESLKQQYI--FVPKNVKDVYLLHIL 380

Query: 240 QSQDTM--KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              + M  ++ IIF +  ++   L   LE+    V A+H    Q  R+  +  FK G + 
Sbjct: 381 SKMEEMGIRSAIIFVSTCRSCHLLSLLLEELDLEVAALHSFKSQSLRLAAVHRFKSGQVP 440

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLDIP V  V N+D+P    +Y+HR+GRT RAGR G + ++V + D+  I
Sbjct: 441 ILLATDVASRGLDIPTVDLVVNYDIPRYPRDYVHRVGRTARAGRGGLSLSIVTQNDVDLI 500

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKID-IAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
             IE ++ K++D  +          E +D I +   AR+   +     GF+ + K   +Q
Sbjct: 501 HEIEAVLGKQLDKFDCKEK------EVLDNITKVYKARRVATMKMMDDGFEEKAKARKAQ 554

Query: 417 K 417
           K
Sbjct: 555 K 555


>gi|298708482|emb|CBJ30606.1| eukaryotic initiation factor 4A [Ectocarpus siliculosus]
          Length = 404

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 123/379 (32%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L  +++  +   G+ KP+ IQ + +  +L   D    AQ+GTGKTA+F + +L  
Sbjct: 33  FDAMELREELLRGIYAYGFEKPSAIQQRAVKPILMGKDCIAQAQSGTGKTATFAVSILQK 92

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++   A  +    L+L PTRELA Q+       G    L V   +GG       + L+ G
Sbjct: 93  IDVAAADCQ---ALVLAPTRELAQQIVKVVRALGDFMQLQVHACVGGTAVRDDIRTLQNG 149

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ D  +RG L ++ + + V+DEAD ML  GF   I ++   +P   Q  L
Sbjct: 150 VHIVVGTPGRVYDMISRGALRLDRVGLFVLDEADEMLSRGFKDQIYDVFQYLPERVQVAL 209

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  ++ +V+  F+  P RI V     T E I+  ++A   +  K    C L + L 
Sbjct: 210 FSATMPLDVLEVTNRFMPEPVRILVKKDELTLEGIKQFYIAVDREEWKLDTLCDLYETL- 268

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   II+CN ++ V  L   ++++ F++  +HG++ Q  R  I+  F+ G+ +++
Sbjct: 269 ----TITQAIIYCNTRRRVDWLSEKMQERDFTISCMHGDMGQGERDVIMREFRSGSSRVL 324

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V + D++++  
Sbjct: 325 ITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTQGDVRYLRD 384

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    +V+ +  +++ L
Sbjct: 385 IEEFYTTQVEEMPMNVADL 403


>gi|325964952|ref|YP_004242858.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323471039|gb|ADX74724.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 633

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 128/363 (35%), Positives = 193/363 (53%), Gaps = 13/363 (3%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA LG +PK +   L A G   P PIQ+KT+P  L   DV G  +TG+GKT +F +P++ 
Sbjct: 4   FAALG-TPKALADTLTAQGIETPFPIQVKTLPDTLAGRDVLGRGRTGSGKTIAFAIPLVA 62

Query: 62  ILEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L +  A    +   P  L+L PTRELA Q+    E   K   L   ++ GGI    Q K
Sbjct: 63  RLAEREAPYFRKPGRPMGLVLAPTRELATQINATIEPLAKAAGLNTTVIYGGISQARQEK 122

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D++I  PGR+ D   +  L +  +EI V+DEAD M D+GF+P ++ +  + P  
Sbjct: 123 ALRAGVDIVIACPGRLEDLIRQRILTLEAVEITVLDEADHMADLGFLPVVKKLMDMTPSQ 182

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q LLFSAT+ + + K+ + +L NP    V+ P +   T+EH  +    Q  KK    Q 
Sbjct: 183 GQRLLFSATLDNGVDKIVQRYLSNPLTHSVDDPQAAVTTMEHHVLVVNDQTVKK----QL 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++        ++F   K +   L  +L   G     +HGN+ Q +R + L+ F  G ++
Sbjct: 239 IVELASGAGRRVLFMRTKHHARKLAKTLTDAGIPAVDLHGNLSQNARDRNLAEFSNGDVR 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE---DI 354
           ++VA+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   T+   E   D+
Sbjct: 299 VLVATDVAARGVHVDDVELVIHVDPPTEHKAYLHRSGRTARAGSDGTVVTITLPEQQTDV 358

Query: 355 KHI 357
           K +
Sbjct: 359 KKL 361


>gi|145473681|ref|XP_001462504.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124430344|emb|CAK95131.1| unnamed protein product [Paramecium tetraurelia]
          Length = 706

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 120/355 (33%), Positives = 212/355 (59%), Gaps = 5/355 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL P++  A+   G+  PTPIQ K IP +L   D+   ++TG+GKTA+F++P++  
Sbjct: 12  FESMGLIPELYRAIKSQGFNVPTPIQRKAIPQILAGRDIVACSKTGSGKTAAFLIPLINK 71

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     V + R LIL PTRELA Q+A   +   K  ++  ++++GG  FE Q + L   
Sbjct: 72  LQNHSTVVGI-RGLILLPTRELALQIASVLKALLKFSDIQYSIMVGGHGFEGQFESLASN 130

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LICTPGR+L H    +L ++ +++++ DEAD + +MG    ++ I S +P  +Q+L+
Sbjct: 131 PDILICTPGRVLQHLLEDRLKLSRVQMVIYDEADFLFEMGLADQLKQILSHLPSQKQSLM 190

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++L   +   L++    +++      ++++  F+  +A    K + L  L++S 
Sbjct: 191 FSATIPEQLSMFASVGLKDYIFCKLDKEFQLPDSMQLHFL--FAANDNKLSALIYLIRSL 248

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D     +IF + +  V  L ++L K   S   ++G +DQ  R + L NFK   +++++ +
Sbjct: 249 DD--TCLIFASTRFLVDMLSYALNKFHISNVHVYGKMDQLDRKEQLDNFKRNQVKVLIVT 306

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           DLA+RG+D+P V +V ++D P+  + +IHR GRT RAG+ G  + L++ E+I +I
Sbjct: 307 DLASRGIDLPFVANVIHYDYPSNPKIFIHRSGRTARAGKAGYVYALISSEEILYI 361


>gi|221124764|ref|XP_002163050.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
           [Hydra magnipapillata]
          Length = 396

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 121/367 (32%), Positives = 198/367 (53%), Gaps = 56/367 (15%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG++  +  + L  G+  PT IQ + IPL L+  D+ G+A+TG+GKT +F LP+L  
Sbjct: 11  FKDLGVTDVLCESCLRLGWTHPTKIQREAIPLALEGKDIIGLAETGSGKTGAFALPVLQT 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     R+     L++ PTRELA Q+++ FE  G +  +  A+++GG+    Q+  L + 
Sbjct: 71  LLDNPQRLY---ALVITPTRELAFQISEQFEALGSSIGIKCAVIVGGVDLMTQSLALTKK 127

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             ++I TPGR++DH    K   + +++ L++DEADR+L+M F   +  I  ++P  R T 
Sbjct: 128 PHIVIATPGRLVDHLENTKGFSLRSLKYLIMDEADRILNMDFEEEVNKILKVIPKERSTY 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT ++ K+    L+NP ++EV+T   T E ++  ++    ++  K          
Sbjct: 188 LFSATMTKKVAKLQRASLKNPVKVEVSTKFQTVEKLQQSYIFIPNKFKAK---------- 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                                                     R+  L+ +K  +  +++A
Sbjct: 238 ------------------------------------------RLGALNKYKSKSRTILIA 255

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR G++ T V + D++    IE
Sbjct: 256 TDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIE 315

Query: 362 KLIEKKV 368
           +LI KK+
Sbjct: 316 QLIGKKL 322


>gi|119499061|ref|XP_001266288.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Neosartorya fischeri NRRL 181]
 gi|142985577|sp|A1D071|FAL1_NEOFI RecName: Full=ATP-dependent RNA helicase fal1
 gi|119414452|gb|EAW24391.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Neosartorya fischeri NRRL 181]
          Length = 399

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 121/379 (31%), Positives = 205/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L +
Sbjct: 27  FEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQV 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 87  ID---TVVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 144 QHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVV 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P R+ V     T E I+  F+A   +   +   C L   L 
Sbjct: 204 VSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTL- 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++
Sbjct: 263 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  
Sbjct: 319 ISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRD 378

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 379 IELYYSTQIDEMPMNVADL 397


>gi|39104462|dbj|BAD04052.1| vasa homologue [Leucopsarion petersii]
          Length = 645

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 131/359 (36%), Positives = 203/359 (56%), Gaps = 14/359 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   +P++    D+   AQTG+GKTA+F+LP+L
Sbjct: 210 MSFEEAALCESLKKNVSKSGYVKPTPVQKHGVPIISAGRDLMACAQTGSGKTAAFLLPIL 269

Query: 61  T-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G A      ++ P  LI+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 270 QHLMADGVAASQFSELQEPEALIVAPTRELINQIHLEARKFAYGTCVRPVVVYGGVSTGH 329

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L RG ++L  TPGR+LD  NRGK+ +  +   V+DEADRMLDMGF P ++ +    
Sbjct: 330 QIRDLCRGCNILCGTPGRLLDVINRGKVGLTKLRYFVLDEADRMLDMGFEPDMRRLVGSP 389

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +++QK++ +FL+     + V         +   FV    ++ 
Sbjct: 390 GMPTKEDRQTLMFSATYPEDIQKLAADFLKTDYLFLAVGIVGGACTDVNQEFVEV-TKFD 448

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL+ LL++  T +  ++F   K+    +   L ++     +IHG  +QR R + L 
Sbjct: 449 KREKLLE-LLKTTGTDRT-MVFVETKRLADFIAAFLCQEKVPTTSIHGGREQREREQALG 506

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +F+ G   ++VA+ +AARGLDIPDV +V NFD+PN  + Y+HRIGRTGR G  G+A + 
Sbjct: 507 DFRSGKCPVLVATSVAARGLDIPDVQNVVNFDLPNNIDEYVHRIGRTGRCGNLGRAVSF 565


>gi|303271803|ref|XP_003055263.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463237|gb|EEH60515.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 394

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 202/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G+   ++  +   G+ KP+ IQ + +  +    DV   AQ+GTGK++   L +  +
Sbjct: 23  FDAMGIREDLLRGLYSYGFEKPSAIQQRAVMPICSGRDVIAQAQSGTGKSSMISLALCQM 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+      R  + L+L PTRELA Q        G   ++ V   IGG       +KL+ G
Sbjct: 83  LDTS---TREVQALVLSPTRELATQTEKVALALGNFMSVQVHACIGGRSIGEDIRKLDHG 139

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L   NI+ L++DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 140 VHIVSGTPGRVFDMIKRRNLRTRNIKTLILDEADEMLNKGFKEQIYDVYRYLPPETQVVL 199

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 200 VSATLPVEVLEMTTKFMTDPIRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL- 258

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   +    F+V A+HG++ Q+ R  I+  F+ GT +++
Sbjct: 259 ----TITQAVIFCNTKRKVDWLTEKMRANNFTVSAMHGDMPQKERDAIMGEFRGGTTRVL 314

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+PN  ENYIHRIGR+GR GR G A   V  +D++ +  
Sbjct: 315 ITTDVWARGIDVQQVSLVINYDLPNNRENYIHRIGRSGRYGRKGVAINFVKADDVRILRD 374

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 375 IEQYYSTQIDEMPMNVADL 393


>gi|110638059|ref|YP_678268.1| DEAD box-related helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110280740|gb|ABG58926.1| DEAD box-related helicase (ATP-dependent RNA helicase) [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 437

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 215/375 (57%), Gaps = 11/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D   +  ++ ++   G+ KPTPIQ + IP+++   D+   AQTGTGKTA+++LP+L
Sbjct: 1   MTFNDFNFNSGLLDSLSSMGFNKPTPIQTEAIPVIMSNSDLVACAQTGTGKTAAYMLPIL 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQN 116
             I+E     +    TL+L PTRELA Q+    E +    N++   + GG     ++ Q 
Sbjct: 61  HKIIESNTDSLD---TLVLVPTRELAIQIDQQIEGFSYFINVSSIAVYGGGDGATWDQQR 117

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  GA+++I TPGR+L     G   +  I+ LV+DEADRMLDMGF   I  + S +P 
Sbjct: 118 KALTDGANIVIATPGRLLAQLQSGTANLKQIKHLVLDEADRMLDMGFYDDIVRVISYLPT 177

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSATM  +++ ++   +++P++I +         ++  ++    Q +K   L++
Sbjct: 178 ERQTIMFSATMPTKMRALANKLMKDPQQINIAISKPAEGILQQAYLVYEEQKNK---LIK 234

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +L S +   + IIF + K++V  L   L   GFS+   H +++Q  R +I+  FK   +
Sbjct: 235 HILSSGN-FNSIIIFSSTKEHVKKLERDLSNMGFSLKGFHSDLEQEEREEIMRAFKSRQL 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q+++ +D+ +RG+DI  +  V N +VP  AENYIHRIGRT RA   G A T ++  D   
Sbjct: 294 QMLIGTDILSRGIDIDGIDLVINAEVPGDAENYIHRIGRTARAATTGTAITFISDTDQYK 353

Query: 357 IDAIEKLIEKKVDWL 371
              IE LI ++++ L
Sbjct: 354 FLQIENLIGREIEKL 368


>gi|312139811|ref|YP_004007147.1| dead/deah box helicase [Rhodococcus equi 103S]
 gi|311889150|emb|CBH48463.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
          Length = 700

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 123/351 (35%), Positives = 189/351 (53%), Gaps = 6/351 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA++GL   VV A+       P+PIQ   IP  +   ++ G AQTG+GKT +F LPML
Sbjct: 1   MTFAEIGLPEPVVAALARNSITVPSPIQAMAIPDAIAGKNILGRAQTGSGKTLAFGLPML 60

Query: 61  TILEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +   R   + PR L+L PTRELA QV D+   Y  +  L V   +GG PF  Q  +
Sbjct: 61  ARLARHEDRPAPKRPRALVLVPTRELAFQVVDSLTPYAGSLGLNVRAAVGGTPFTKQVDQ 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+ DH  +   ++  IE+  +DEAD+M DMGF+P ++ + +  P   
Sbjct: 121 LRRGVDILVATPGRLGDHLRQNTCVLGEIEMTALDEADQMADMGFLPEVRTLLADTPNDS 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT+ ++++ +   FL   +        ++  T++H  +        K A+L ++
Sbjct: 181 QRLLFSATLDNDVKTLVREFLPEHELHSTQDGRASVTTMDHYVL--LVDRGDKDAVLAEI 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +      I+F   K     +   L ++G +  A+HG   Q  R ++L  FK G   +
Sbjct: 239 ASREGGRT--IMFARTKLGAEGITERLREKGVAAEALHGGKAQNQRTRVLERFKTGRTPV 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +VA+D+AARG+ +  +  V + D P   ++Y+HR GRT RAG  G    +V
Sbjct: 297 LVATDVAARGIHVDGIDLVVHVDPPQDHKDYLHRAGRTARAGEAGVVAAIV 347


>gi|147772471|emb|CAN65105.1| hypothetical protein VITISV_021046 [Vitis vinifera]
          Length = 592

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 146/421 (34%), Positives = 228/421 (54%), Gaps = 17/421 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+   V A  + G  +PTP+Q   IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 156 FADLGLAEWAVQACKELGMRRPTPVQHHCIPRILAGDDVLGLAQTGSGKTAAFALPILHR 215

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    V     L++ PTRELA Q+A+ F   G   +L  A+++GG+    Q + L + 
Sbjct: 216 LAEDPFGVF---ALVVTPTRELAYQLAEQFRALGSCLHLRCAVVVGGMDMINQAQTLMQR 272

Query: 123 ADVLICTPGRI---LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             V+I TPGR+   L+       +    + LV+DEADR+LD+GF   ++ +   +P  RQ
Sbjct: 273 PHVVIATPGRVKVLLEQNPDIPAVFARTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 332

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATMT +LQ + E         E      T E+++  ++  +   + K   L  +L
Sbjct: 333 TLLFSATMTSDLQTLLELSSNKAYFYEAYEGFKTVESLKQQYI--FVPKNVKDVYLLHIL 390

Query: 240 QSQDTM--KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              + M  ++ IIF +  ++   L   LE+    V A+H    Q  R+  +  FK G + 
Sbjct: 391 SKMEEMGIRSAIIFVSTCRSCHLLSLLLEELDLEVAALHSFKSQSLRLAAVHRFKSGQVP 450

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLDIP V  V N+D+P    +Y+HR+GRT RAGR G + ++V + D+  I
Sbjct: 451 ILLATDVASRGLDIPTVDLVVNYDIPRYPRDYVHRVGRTARAGRGGLSLSIVTQNDVDLI 510

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKID-IAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
             IE ++ K++D  +          E +D I +   AR+   +     GF+ + K   +Q
Sbjct: 511 HEIEAVLGKQLDKFDCKEK------EVLDNITKVYKARRVATMKMMDDGFEEKAKARKAQ 564

Query: 417 K 417
           K
Sbjct: 565 K 565


>gi|295399200|ref|ZP_06809182.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110198|ref|YP_003988514.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1]
 gi|294978666|gb|EFG54262.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215299|gb|ADP73903.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1]
          Length = 435

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 133/377 (35%), Positives = 206/377 (54%), Gaps = 13/377 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ A+ +  + KPT IQ + IP+ L+     G +QTGTGKT +++LP++  
Sbjct: 6   FERFSFQPFIIEAIKELRFYKPTEIQERIIPIALRGKSAIGQSQTGTGKTHAYLLPIIEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           ++  R  V+    +I  PTRELA Q+     K  K    +  +T    IGG   +   +K
Sbjct: 66  IDPDRKAVQ---AVITAPTRELATQIYHEILKITKFCPSDRQITARCFIGGTDKQKAIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+    +++ TPGRI D      LL+     LV+DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LKTQPHIVVGTPGRINDLIREQALLVRTANTLVVDEADLMLDMGFIVDVDQIAARMPKEL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+   + +++NP+ + V      AE IEH  V   ++   K  LL ++
Sbjct: 183 QMLVFSATIPEKLKPFLKKYMENPEYVHVAPKQVAAEKIEHVLVPLRSR--DKVKLLHEM 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L + +     I+F N KK    +   L ++G  V  +HG++  R R K++   ++   Q 
Sbjct: 241 LLAYNPY-LAIVFTNTKKMADEVADKLIEKGMKVGILHGDLSPRERKKMMKQIRDLEFQY 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N+++P   + YIHR GRT RAG  G A T+    D    D
Sbjct: 300 IVATDLAARGIDIEGVSHVINYELPKDLQFYIHRAGRTARAGYTGMAATIYEPSD---QD 356

Query: 359 AIEKLIEKKVDWLNGDL 375
           AI KL +  +++L+ DL
Sbjct: 357 AITKLEKMGIEFLHRDL 373


>gi|323455700|gb|EGB11568.1| hypothetical protein AURANDRAFT_2416 [Aureococcus anophagefferens]
          Length = 435

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 196/369 (53%), Gaps = 16/369 (4%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILE 64
           LGL   +V AV + G+ KPT IQ   IP+ L   DV G+A+TG+GKT +F LP+L  +LE
Sbjct: 1   LGLHAALVDAVGELGWAKPTRIQKAAIPVALSGRDVIGLAETGSGKTGAFGLPILHKLLE 60

Query: 65  KGRARVRMPRTLI---LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           K       P  L    L PTRELA Q+ + F+  G    L    ++GG+   AQ   L +
Sbjct: 61  K-------PSRLFGVALAPTRELAVQIHEVFDALGAAIGLRCVCVVGGVEIAAQALALAK 113

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQ 179
              V++ TPGR++DH    K   +   + LV+DEADRML M F   +  I   +P   R 
Sbjct: 114 LPHVVVATPGRLVDHLENTKGFSLRTCKCLVMDEADRMLSMDFEKELDAIVGAIPREGRC 173

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           ++LFSATMT ++ K+    L  P ++ VN   +    ++  ++   A++ K+C L   L 
Sbjct: 174 SMLFSATMTSKVAKLQRASLYKPVKVAVNDKFAMPRQLDQRYLFVPAKH-KECYLAAVLD 232

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      ++FC            L   GF    +HG + Q  R+  L  FK G   ++
Sbjct: 233 ARRGA--TALVFCATCAGATRATLLLRNLGFDAACLHGQMAQPKRLGALHKFKAGAATIL 290

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V N+DVP   + Y+HR+GRT RAGR G A   V + D++    
Sbjct: 291 VATDVAARGLDIPAVDLVLNYDVPTHGKEYVHRVGRTARAGRKGSAIAFVTQYDVELYQR 350

Query: 360 IEKLIEKKV 368
           +E LI  K+
Sbjct: 351 LEHLIGVKL 359


>gi|257486807|ref|ZP_05640848.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 410

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 125/332 (37%), Positives = 191/332 (57%), Gaps = 5/332 (1%)

Query: 37  QRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMP-RTLILEPTRELAAQVADNFEKY 95
           Q  D+   AQTG+GKTA+FVLP+L  L  G A+VR+  R +IL PTRELA Q     E++
Sbjct: 1   QGRDLRVTAQTGSGKTAAFVLPILNRL-IGPAKVRVDIRAVILLPTRELAQQTLKEVERF 59

Query: 96  GKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEA 155
            +   +   L+ GG  F+ Q   L +  D+LI TPGR+L+  N G L + ++E+LV+DEA
Sbjct: 60  SQFTFVKAGLITGGEDFKVQAAMLRKVPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEA 119

Query: 156 DRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTA 214
           DRMLDMGF   ++ +        QT+LFSAT     L+++    L++P+ ++VN+ S  A
Sbjct: 120 DRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGLREMIGKVLKDPQHLQVNSVSELA 179

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
               H  +       K+  L    L + +T +  IIF N K     L   L    +    
Sbjct: 180 SGTRHQIITADHNVHKEQVL--NWLLANETYQKAIIFTNTKAMADRLYGRLVALEYKAFV 237

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG+ DQ+ R   +   K+G  ++MVA+D+AARGLD+  +  V NFD+P   ++Y+HR+G
Sbjct: 238 LHGDKDQKDRKAAIDRLKQGGAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVG 297

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RTGRAG  G A +L+   D   + ++E+ +++
Sbjct: 298 RTGRAGSDGLAISLICHGDWNLMSSVERYLKQ 329


>gi|318056420|ref|ZP_07975143.1| DEAD-box RNA helicase [Streptomyces sp. SA3_actG]
 gi|318077530|ref|ZP_07984862.1| DEAD-box RNA helicase [Streptomyces sp. SA3_actF]
          Length = 473

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 128/348 (36%), Positives = 189/348 (54%), Gaps = 7/348 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FADL + PK + A L A G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L 
Sbjct: 50  FADLDM-PKALEAALGAQGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLA 108

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                RA    P  L+L PTRELA QV D    Y ++  L +A ++GG+P   Q   L R
Sbjct: 109 RTAGKRAEAGQPLALVLVPTRELAQQVTDALTPYARSVRLRLATVVGGMPIGRQATALRR 168

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+VL+ TPGR+ D  +RG   ++ + + V+DEAD+M DMGF+P +  +   V    Q +
Sbjct: 169 GAEVLVATPGRLKDLIDRGHCRLDQVAVTVLDEADQMTDMGFMPQVTALLDQVCPGGQRM 228

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +  +   +L +P    V+  +    T+EH  +  +   + K A+  ++   
Sbjct: 229 LFSATLDRNVDLLVRRYLNDPVVHSVDPSAGAVTTMEHHVL--HVHGADKHAIATEIAAR 286

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   ++F + K  V  L   L + G    A+HG   Q  R + L  FK G + ++VA
Sbjct: 287 DGRV---LLFLDTKHAVDRLTEHLLRSGVRAAALHGGKSQPQRTRTLEQFKTGHVSVLVA 343

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +++AARG+ + D+  V N D P   ++Y+HR GRT RAGR G   TLV
Sbjct: 344 TNVAARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGRSGSVATLV 391


>gi|223056258|gb|ACM80367.1| vasa [Eucidaris tribuloides]
          Length = 498

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 133/357 (37%), Positives = 198/357 (55%), Gaps = 14/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L  KV   VL A Y KPTP+Q   IP++    D+   AQTG+GKTA+F LP+ T 
Sbjct: 84  FDEADLDDKVRANVLKAKYDKPTPVQKYGIPIISAGRDLMACAQTGSGKTAAFXLPIXTG 143

Query: 63  LEKGRARV------RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      V      + P T I+ PTRELA Q  +   K+ +   L   ++ GG     Q 
Sbjct: 144 MLTNAGAVSCSNVIQEPLTXIVSPTRELAIQXYNEARKFCRMTTLRPVVVYGGTXVSYQM 203

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            ++++GA +++ TPGR+ D  NRG + +  +  LV+DEADRMLDMGF P IQ +    P 
Sbjct: 204 SEVQKGAGIVVATPGRLHDFINRGYIGLGKLCYLVLDEADRMLDMGFGPEIQKLIDH-PH 262

Query: 177 T-----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTL+FSAT  + +Q+ +  +L +   + V      A  IE   V    Q++K+
Sbjct: 263 XPKKGDRQTLMFSATFPNXVQERAGMYLNDYLFLXVGRVGGAASDIEQ-RVFQVEQFAKR 321

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L+  L + +D  +  ++F   K+N   L   L + GF   +IHG+  Q+ R + L +F
Sbjct: 322 EKLMDILREQKDDDRT-LVFVETKRNADFLASLLSQSGFPTTSIHGDRMQQEREEALHHF 380

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             G   ++VA+ +AARGLDIP V HV N+D+P+  + Y+HRIGRTGR G  G++ + 
Sbjct: 381 XIGKAPILVATSVAARGLDIPGVKHVVNYDLPDVIDEYVHRIGRTGRVGNLGRSTSF 437


>gi|317030312|ref|XP_001392304.2| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Aspergillus
           niger CBS 513.88]
 gi|143359932|sp|A2QQA8|PRP5_ASPNC RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
          Length = 1180

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 131/373 (35%), Positives = 206/373 (55%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  + +  +   GY K T IQ + IP ++   DV G+A+TG+GKT +F++PM   
Sbjct: 549 WSQCGLGVQTLDVIDKLGYEKTTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRH 608

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++  R    M  P  LI+ PTRELA Q+  + + + K  NL      GG P + Q   L+
Sbjct: 609 IKDQRPLDNMEGPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLK 668

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I + +   
Sbjct: 669 RGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPD 728

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT    ++ ++   L  P  I V   S  A  I    V       K   LL+ 
Sbjct: 729 RQTVLFSATFPRNMEALARKTLTKPIEIVVGGKSVVAPEITQ-IVEVRNDDQKFVRLLEL 787

Query: 238 L--LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L  L S D  ++   +IF ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 788 LGNLYSSDENEDARALIFVDRQEAADALLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKA 847

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 848 GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 907

Query: 354 IKHIDAIEKLIEK 366
            ++   I K +++
Sbjct: 908 ERYSVDIAKALKQ 920


>gi|328708524|ref|XP_001949320.2| PREDICTED: ATP-dependent RNA helicase DDX54-like, partial
           [Acyrthosiphon pisum]
          Length = 478

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 130/357 (36%), Positives = 204/357 (57%), Gaps = 4/357 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V+  VL  GY  PTPIQ KTIP+ L+  DV  +A+TG+GKTA F++PM   
Sbjct: 30  FQAMGLSFPVLKGVLKRGYKVPTPIQRKTIPIALENRDVVAMARTGSGKTACFLIPMFEK 89

Query: 63  LEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L +      R  R LIL PTRELA Q     ++ GK  NL  A+++GG P EAQ   +  
Sbjct: 90  LTQHTVNGHRGIRALILSPTRELAVQTLKFLKEIGKFTNLKSAVILGGDPMEAQFSTMHS 149

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR L       L +  I+ +V DEADR+ +MGF   +  I + +P TRQTL
Sbjct: 150 APDIVVATPGRFLHLCVEMSLKLPYIQYVVFDEADRLFEMGFGEQLTEIIARLPETRQTL 209

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL-LQQLLQ 240
           LFSAT+   L + +   L +P  I ++  S   +T+   F+    +      L L + + 
Sbjct: 210 LFSATLPKVLVQFARAGLSDPVLIRLDVESKIPDTLGLGFLNVRPEERDGALLCLLKYVV 269

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D+M   IIF   K +V  +   L+ Q      I+ ++D  +R    S F+ G+++ ++
Sbjct: 270 KPDSMT--IIFAPTKHHVDFIHLLLDFQDIPNTFIYSDLDPTARKINASKFQTGSVKTLI 327

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +D+AARG+DIP +  V N+  P +++ ++HR+GR  RAG+ G+A++LV ++++ ++
Sbjct: 328 TTDIAARGIDIPQLDTVINYTFPAKSKLFVHRVGRCARAGKVGQAYSLVTRDEMCYL 384


>gi|159125976|gb|EDP51092.1| inositol 5-phosphatase, putative [Aspergillus fumigatus A1163]
          Length = 429

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 200/370 (54%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L +
Sbjct: 36  FEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQV 95

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 96  ID---TVVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYG 152

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 153 QHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVV 212

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P R+ V     T E I+  F+A   +   +   C L   L 
Sbjct: 213 VSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTL- 271

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++
Sbjct: 272 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVL 327

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  
Sbjct: 328 ISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRD 387

Query: 360 IEKLIEKKVD 369
           IE     ++D
Sbjct: 388 IELYYSTQID 397


>gi|167394408|ref|XP_001733535.1| pre-mRNA-processing ATP-dependent RNA helicase prp11 [Entamoeba
           dispar SAW760]
 gi|165894690|gb|EDR22596.1| pre-mRNA-processing ATP-dependent RNA helicase prp11, putative
           [Entamoeba dispar SAW760]
          Length = 636

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 124/368 (33%), Positives = 207/368 (56%), Gaps = 11/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           +++ G++P  +  +    Y KP+P+Q + IP+++  +D    A+TG+GKT ++ +P++  
Sbjct: 56  WSECGINPITMDVIKALKYEKPSPVQRQAIPVIMSGYDAIVCAKTGSGKTLAYTIPLIKH 115

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + ++  ++   P  ++  P RELA Q+     K+GK  N+    + GG     Q   L+
Sbjct: 116 VMAQRPLSKGEGPIGIVFAPIRELAEQINTEINKFGKYLNIRSVAVFGGTGISNQIGALK 175

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RG ++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P I+ I   +   
Sbjct: 176 RGTEIVVCTPGRMIDILVTNNGRITNLRRVTFVVLDEADRMFDMGFGPQIKRIIEGIRPD 235

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +Q ++FSAT    +++ +  FL+ P  I     S  + TIE   +    +  KK A L  
Sbjct: 236 KQIVMFSATFPISVEQHAREFLKKPIEIICGGRSQVSNTIEQ--IVEVIEIKKKIARLIS 293

Query: 238 LLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++  Q+  K G  IIF   +KN   L  +L ++  +   +HG IDQ  R   +  FK G 
Sbjct: 294 IVLEQNN-KGGRIIIFTETQKNCDELYQNLMERNINCLLLHGGIDQIDRQNTIQEFKSGI 352

Query: 296 IQ-LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + +++ + L ARGLDI  +  V N+D PN  E+Y+HR+GRTGRAG+ GKA T + KE+ 
Sbjct: 353 GRTILITTSLCARGLDIKGLELVINYDCPNHLEDYVHRVGRTGRAGKRGKAITFITKEEE 412

Query: 355 KHIDAIEK 362
           K+ + I K
Sbjct: 413 KYSEDIVK 420


>gi|154418331|ref|XP_001582184.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121916417|gb|EAY21198.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 640

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 200/379 (52%), Gaps = 3/379 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           +++ D GL   ++  +   G+ +PT IQ + IP +L   D+ G A TG+GKT +F++P +
Sbjct: 101 VNWTDCGLPAPLMSHLRLRGFKQPTSIQCQAIPCILSGRDIIGCAVTGSGKTLAFIIPCL 160

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L +L +          +IL PTRELA Q     +K     +   A L+GG   E Q + +
Sbjct: 161 LHVLAQPPTGQYEAAAVILSPTRELAYQTHIECQKIFSLMDKKSACLVGGNDIENQLRAI 220

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G++V+I TPGR +D  +     +  +  LVIDEADRM D+GF P +  I   +   RQ
Sbjct: 221 KNGSNVIIATPGRFIDLLSSSAFNIKKVSYLVIDEADRMFDLGFEPQVIRIAERMRKDRQ 280

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT    +++++   LQN   I V   +     I    + T      K   L ++L
Sbjct: 281 TLMFSATFPHTVERIARKLLQNSIEIVVGLRNVVTPNINQSILVT--NEDNKFNSLLKIL 338

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T    ++F N +    +L   L K G+SV  +HG++D   R  IL +F+EG   ++
Sbjct: 339 GDYTTQGQALVFTNTQDRAEDLFGKLNKSGYSVGLLHGSMDSPDRNSILHDFREGRFSVL 398

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V + + ARG+DI  +  V N+D P+   +Y+HR+GRTGRAG+ G AFT V  +D      
Sbjct: 399 VLTSVGARGIDIASIICVINYDAPDHEADYVHRVGRTGRAGKKGYAFTFVTDKDKTAAAG 458

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+  ++K    +  DL  L
Sbjct: 459 IKNAMKKSGCEIPKDLEDL 477


>gi|300858427|ref|YP_003783410.1| hypothetical protein cpfrc_01010 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685881|gb|ADK28803.1| hypothetical protein cpfrc_01010 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206138|gb|ADL10480.1| Putative superfamily II DNA/RNA helicase [Corynebacterium
           pseudotuberculosis C231]
 gi|302330695|gb|ADL20889.1| Putative Superfamily II DNA and RNA helicase [Corynebacterium
           pseudotuberculosis 1002]
          Length = 435

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 143/433 (33%), Positives = 223/433 (51%), Gaps = 20/433 (4%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK-GRARVRMPRTLIL 78
           G   P PIQ   IP  L+  DV G   TG+GKT +F LPM+  L K G +    PR LIL
Sbjct: 6   GITAPFPIQEAAIPDALKGRDVLGRGPTGSGKTFTFGLPMIAALAKTGASLPGHPRGLIL 65

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELAAQV +  ++      L +  ++GG+             D+L+ TPGR  D  N
Sbjct: 66  VPTRELAAQVRERLDEPAAALGLRILDVVGGVSINRHITAFAAPVDILVATPGRAQDLVN 125

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
             KL ++ + I  +DEAD+M DMGF+P +  +  L P   Q LLFSAT+  ++ K+ E F
Sbjct: 126 NKKLFLDKVLITTLDEADQMADMGFLPQVLKLLELTPRDAQRLLFSATLDGDVNKLVERF 185

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           + +P        ++  +T+ H  +    + S+   +L+   +   T    I+F   K  V
Sbjct: 186 MHDPVTHSTAEVAAAVDTMTHYRLHVGDRDSRNDVVLRIAGRIGKT----IMFMRTKHGV 241

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
                 L + G +   IHG+ DQ +R   ++ F +G++ ++VA+D+AARG+DI DV  V 
Sbjct: 242 DRQVKKLRRIGINAVGIHGDKDQNTRTNAITGFSDGSVPVLVATDIAARGIDIGDVDLVV 301

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           + D P   + Y+HR GRT RAG  G   TLV +E I+ +D +  L +  V+  + ++S+ 
Sbjct: 302 HVDPPAEHKAYLHRAGRTARAGSSGTVVTLVMEEQIQEVDTL--LHKAGVNAESLEVSAN 359

Query: 379 NPPLEKIDIAQHNHARKNNPI----PQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQD 434
           +P L  I  AQ        P     PQ+     R+KK+ S++ S    ++ ++    Q+ 
Sbjct: 360 SPELVHITGAQKITGEPLPPFGAAQPQQ-----RQKKSQSTKNSATRRRKPQR----QRT 410

Query: 435 IQENDADSLGFRG 447
             ++   +  FRG
Sbjct: 411 ASKSRGSAASFRG 423


>gi|11602713|emb|CAC18543.1| translation initiation factor 4A-like protein [Echinococcus
           multilocularis]
          Length = 403

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 201/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+ +P+ IQ + I  ++   DV   AQ+GTGKTA+  +  L +
Sbjct: 32  FDSMNLREDLLRGIYAYGFERPSAIQQRAIKQIILGRDVIAQAQSGTGKTATLAIASLQV 91

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    ++R  + LIL PTRELA Q+       G   N+      GG       KKL+ G
Sbjct: 92  LD---IQLRDTQVLILSPTRELALQIQKVILVLGDFMNVQCHACYGGTNVGEDIKKLDYG 148

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L    I++L++DEAD MLD GF   I ++   +P   Q +L
Sbjct: 149 QHIVSGTPGRVFDMIKRRNLRTRTIKLLILDEADEMLDKGFKEQIYDVYRYLPPGTQVVL 208

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SATM  ++ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 209 LSATMPHDILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFETLCDLYDTL- 267

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++    L   + K  F+V  +HG++ Q+ R +I+ NF+    +++
Sbjct: 268 ----TVTQSVIFCNTRRKAEWLADKMCKSNFTVTVMHGDMVQKEREEIMRNFRSSESRVL 323

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+ +PN  E YIHRIGR+GR GR G A   V  EDI+ +  
Sbjct: 324 ITTDLLARGIDVQQVSMVINYGLPNNRELYIHRIGRSGRFGRKGVAINFVKNEDIRILRD 383

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  ++S L
Sbjct: 384 IEQYYSTQIDEMPMNVSDL 402


>gi|84998580|ref|XP_954011.1| eukaryotic translation initiation factor [Theileria annulata]
 gi|65305009|emb|CAI73334.1| eukaryotic translation initiation factor, putative [Theileria
           annulata]
          Length = 394

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 204/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL  +++  +   G+ KP+ +Q + I  +L+  DV   +Q+GTGKT  F L  L  
Sbjct: 23  FEDLGLKEEILKGIFAYGFDKPSAVQQRAIKPILEGRDVIIQSQSGTGKTCVFCLGALQT 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +    + VR  + L+L PTRELA Q        G   N+ V   IGG       K LE G
Sbjct: 83  V---NSNVRETQVLLLSPTRELAEQSQKVCLALGDYCNVEVHCCIGGKKVSDDIKALESG 139

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+        L   NI+ L++DEAD ML+ GF   + ++   +P T Q +L
Sbjct: 140 VQIVSGTPGRVNHMITDRHLNTRNIKQLILDEADEMLNRGFKEQVYSVYRYLPPTIQVVL 199

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++ +++  F+ NP ++ V     T E I+  F++   +   +   C L + L+
Sbjct: 200 VSATLPHDVIEITNKFMNNPFKVLVKRDELTLEGIKQFFISVEKEQWKFDTLCDLYESLI 259

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IFCN K+ V  L   ++   F V  +HG + Q+ R  I+  F++G  +++
Sbjct: 260 ITQ-----AVIFCNTKEKVDWLAKKMKDANFEVSKMHGEMSQKERNDIMQRFRKGESRVL 314

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++DL  RGLD+  V  V N+D+PN  E+YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 315 ISTDLWGRGLDVQQVSLVVNYDLPNSRESYIHRIGRSGRYGRKGVAINFVKDDDIRILRD 374

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  ++S L
Sbjct: 375 IEQYYSTQIDEMPMNISEL 393


>gi|50551977|ref|XP_503463.1| YALI0E02552p [Yarrowia lipolytica]
 gi|74659870|sp|Q6C799|DBP8_YARLI RecName: Full=ATP-dependent RNA helicase DBP8
 gi|49649332|emb|CAG79042.1| YALI0E02552p [Yarrowia lipolytica]
          Length = 442

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 130/380 (34%), Positives = 207/380 (54%), Gaps = 18/380 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL   +  ++ +    KP+ IQ   IP +++  D  G A+TG+GKT +F  PML
Sbjct: 1   MSFTDLGLPEWLNESLSNMAITKPSAIQKACIPQIMKGKDCIGGARTGSGKTIAFAAPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               K    +     L+L PTRELA Q+A+ F   G N N+ VAL+ GG+    Q+ +L+
Sbjct: 61  AEWSKDPCGIF---GLVLTPTRELAIQIAEQFTALGANMNIRVALIYGGVDMVKQSLELQ 117

Query: 121 RGADVLICTPGRILDHFN-------RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           +    +I TPGR+ DH         RG      +  +V+DEADR+L  GF+P ++    L
Sbjct: 118 KMPHFVIATPGRLADHIRSSGEDTIRG---FRRVRYVVMDEADRLLTPGFVPDLKTCMDL 174

Query: 174 VP--FTRQTLLFSATMTDELQKVSENFLQN--PKRIEVNTPSSTAETIEHCFVATYAQYS 229
           +P    RQTLLF+AT+TD ++ + +   +   P   E+ +  +   T+   ++     Y 
Sbjct: 175 LPDPSKRQTLLFTATVTDAVRALKDRTGEKGPPFIHEIASDIAVPSTLTQSYL-FLPGYV 233

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           ++  L   L    +  K+ IIF N+ +    L   L        ++H  + Q+ R+  L 
Sbjct: 234 REAYLWAILTHPDNEKKSAIIFVNRTQTAETLRRMLMALDVKTASLHSEMRQQERVNALG 293

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+    +++VA+D+A+RGLDIP V  V NFD+P  A++YIHR+GRT RAGR G++ +LV
Sbjct: 294 RFRAQAARVLVATDVASRGLDIPTVEMVINFDLPADADDYIHRVGRTARAGRKGQSVSLV 353

Query: 350 AKEDIKHIDAIEKLIEKKVD 369
            + D+  +  IE+ +  K++
Sbjct: 354 TERDVTRVTNIEERVGTKME 373


>gi|156089485|ref|XP_001612149.1| eukaryotic translation initiation factor 4A [Babesia bovis T2Bo]
 gi|154799403|gb|EDO08581.1| eukaryotic translation initiation factor 4A, putative [Babesia
           bovis]
          Length = 402

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 121/377 (32%), Positives = 207/377 (54%), Gaps = 11/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L+  ++  +   G+ +P+ IQ + I  +++ HD  G AQ+GTGKTA+F +  L +
Sbjct: 31  FEALKLNEDLLRGIYSYGFERPSAIQQRGIKPIIENHDTIGQAQSGTGKTATFSIAALQL 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     V   + LIL PTRELA Q+       G    +     +GG        KL+ G
Sbjct: 91  IDYS---VVSCQVLILAPTRELAQQIQKVVLALGDYLKVQCHACVGGTIVRDDVHKLKAG 147

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ D  ++  LL N I++ ++DEAD ML  GF   I  +   +P   Q  L
Sbjct: 148 VHMVVGTPGRVYDMIDKKALLTNKIKLFILDEADEMLSRGFKGQIHEVFRRMPPDVQVAL 207

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
           FSATM +E+ +++  F+++PKRI V     T E I+  +V    +   +   C L + + 
Sbjct: 208 FSATMPNEILELTTKFMRSPKRILVKKDELTLEGIKQFYVMIDKEEYKFDTLCDLYESV- 266

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   II+CN ++ V  L   ++++ F+V ++HG++ Q  R  I+  F+ G+ +++
Sbjct: 267 ----TITQAIIYCNTRRKVDMLTSKMQERDFTVSSMHGDMSQNERDLIMREFRSGSTRVL 322

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P   +NYIHRIGR+GR GR G A   +   D++ +  
Sbjct: 323 ITTDLLARGIDVQQVSLVINYDLPMSPDNYIHRIGRSGRFGRKGVAINFLTPMDVECMKN 382

Query: 360 IEKLIEKKVDWLNGDLS 376
           IE     +++ +  +++
Sbjct: 383 IENYYNTQIEEMPAEIA 399


>gi|301764042|ref|XP_002917443.1| PREDICTED: probable ATP-dependent RNA helicase DDX10-like
           [Ailuropoda melanoleuca]
          Length = 926

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 138/376 (36%), Positives = 212/376 (56%), Gaps = 20/376 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P+L  
Sbjct: 127 FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 186

Query: 63  LEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     R++   T     LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +
Sbjct: 187 L----YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE 242

Query: 118 KLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++    ++L+CTPGR+L H +        N+++LV+DEADR+LDMGF   +  I   +P 
Sbjct: 243 RIN-NINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPK 301

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCAL 234
            RQTLLFSAT T  ++ ++   L+NP+ + V+  +  ST  T+E  ++    Q  +K ++
Sbjct: 302 KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQ--QKISV 359

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL--EKQGFSVCAIHGNIDQRSRMKILSNFK 292
           L   L+S    K  I+F +  K V  L       + G S+ A+HG   Q  RM++ + F 
Sbjct: 360 LYSFLRSH-LKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFV 418

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                ++ A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   
Sbjct: 419 RKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPS 478

Query: 353 DIKHIDAIEKLIEKKV 368
           + K +  +++L++KKV
Sbjct: 479 EEKGM--VQQLLQKKV 492


>gi|167624613|ref|YP_001674907.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167354635|gb|ABZ77248.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 458

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 208/374 (55%), Gaps = 7/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  L  +++ ++   G   PT IQ + IP+ L   D+   ++TG+GKT +F+LP +
Sbjct: 11  LQFTDFALDQRLLQSLKHMGIDTPTEIQEQAIPIALAGKDLMASSKTGSGKTLAFLLPAM 70

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L   +A   R PR +IL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 71  QRLISCKALSKRDPRVVILLPTRELATQVYSQLRLLVANTQFKATKILGGENFNDQAKAL 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGR+ DH  +  L +N +E+L++DEADRMLD+GF   ++ I +     R 
Sbjct: 131 ARDPHFVVATPGRLADHLKQHHLHLNGLELLILDEADRMLDLGFAEQLKLINNAADHKRR 190

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   ++  ++   L+ P+ + +   +   + I +  F+  +  +  K A+L 
Sbjct: 191 QTLMFSATLDHGDVNDIANELLKFPEHVAIGASNLEHKDITQRIFLCDHLDH--KEAILT 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L+ ++  K  IIF   +++   L   L  +GF   ++ G + Q +R +I+  F  G  
Sbjct: 249 RILK-EEQQKQIIIFTATRQDTDRLATKLAAEGFKTASLSGELKQNARNQIMDEFSRGLQ 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +
Sbjct: 308 QILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWVN 367

Query: 357 IDAIEKLIEKKVDW 370
              ++  + K  ++
Sbjct: 368 FTQVQTFLNKTFNF 381


>gi|134076811|emb|CAK39865.1| unnamed protein product [Aspergillus niger]
          Length = 1191

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 131/373 (35%), Positives = 206/373 (55%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  + +  +   GY K T IQ + IP ++   DV G+A+TG+GKT +F++PM   
Sbjct: 560 WSQCGLGVQTLDVIDKLGYEKTTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRH 619

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++  R    M  P  LI+ PTRELA Q+  + + + K  NL      GG P + Q   L+
Sbjct: 620 IKDQRPLDNMEGPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLK 679

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I + +   
Sbjct: 680 RGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPD 739

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT    ++ ++   L  P  I V   S  A  I    V       K   LL+ 
Sbjct: 740 RQTVLFSATFPRNMEALARKTLTKPIEIVVGGKSVVAPEITQ-IVEVRNDDQKFVRLLEL 798

Query: 238 L--LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L  L S D  ++   +IF ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 799 LGNLYSSDENEDARALIFVDRQEAADALLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKA 858

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 859 GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 918

Query: 354 IKHIDAIEKLIEK 366
            ++   I K +++
Sbjct: 919 ERYSVDIAKALKQ 931


>gi|320581342|gb|EFW95563.1| Putative nucleolar DEAD box RNA helicase [Pichia angusta DL-1]
          Length = 742

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 127/352 (36%), Positives = 205/352 (58%), Gaps = 9/352 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F DL L+   +  V ++ YV  T IQ  +IPL L+ HD+ G A+TG+GKT +F++P++  
Sbjct: 45  FDDLPLTKNTLRGVKESSYVTMTDIQRDSIPLALKGHDILGAAKTGSGKTLAFLIPVIEK 104

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++ +          LI+ PTRELA Q+ +   K GK+++ +  L+IGG  +E + +++ +
Sbjct: 105 LVHENWNEFDGVGALIISPTRELAMQIYEVLLKIGKHHSFSAGLVIGGKDYEFEKERIGK 164

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++LI TPGR+L H ++   L + N++ILV+DEADR+LD+GF   + +I S +P  RQ+
Sbjct: 165 -MNILIGTPGRLLQHMDQSATLNLTNLQILVLDEADRILDLGFKKTLDDIISNLPPERQS 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT T  +Q ++   L NP+ +  ++  SST E++E  +V    Q   K  +L   +
Sbjct: 224 LLFSATQTKSVQDLARLSLVNPEYVNASSDTSSTPESLEQSYVVIRLQ--DKLDILWSFI 281

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEK--QGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +S    K  ++F +  K V  +  +  K   G S+  +HG   Q++RM+    F E    
Sbjct: 282 KSHLDSKI-LVFVSSSKQVHFIYEAFRKLQPGISLMKLHGRQKQKARMETTFKFTESRHC 340

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            + A+D+ ARGLD P +  V   D P     YIHR+GR+ RAGR GK+  ++
Sbjct: 341 CLFATDVVARGLDFPAIDWVVQLDCPEDVATYIHRVGRSARAGRAGKSLLML 392


>gi|226289750|gb|EEH45234.1| ATP-dependent RNA helicase DBP2 [Paracoccidioides brasiliensis
           Pb18]
          Length = 482

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 193/340 (56%), Gaps = 13/340 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ +PT IQ +  P+ L   DV GIA+TG+GKT ++ LP +  
Sbjct: 131 FDEAGFPQYVMTEVKAQGFSRPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 190

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q 
Sbjct: 191 INAQPLLAPGDG----PIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQI 246

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +  
Sbjct: 247 RDLTRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 306

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT ++SAT   ++++++++FL +  ++ + +   +A       V   +++ K+  + +
Sbjct: 307 DRQTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRERMAK 366

Query: 237 QLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            L +  D  KN   +IF   K+   ++   L + G+   +IHG+  Q  R  +L+ FK G
Sbjct: 367 HLERIMDD-KNAKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTG 425

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
              +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIG
Sbjct: 426 KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIG 465


>gi|21222144|ref|NP_627923.1| DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
 gi|7210999|emb|CAB76979.1| putative DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
          Length = 528

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 124/363 (34%), Positives = 192/363 (52%), Gaps = 9/363 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L L  +++ A+ D G  +P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 57  FAELDLPARMLAALGDQGVTEPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 116

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y +   L  A ++GG+    Q   L  G
Sbjct: 117 TAGKRAEPRRPLALVLVPTRELAQQVTDALTPYARAVGLRSATVVGGMSIGRQAGALRSG 176

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D  +RG   + ++ I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 177 AEVVVATPGRLKDLIDRGDCALGDVTITVLDEADQMTDMGFMPQVTALLDQVAADGQRML 236

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + K+   +L +P    V+  +    T+EH  +    +  ++  +       +
Sbjct: 237 FSATLDRNVDKLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVQDEDKQRATI-------E 289

Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++G  I+F + K  V  L   L K G     +HG   Q  R + L+ FK+G +  +V
Sbjct: 290 IAARDGRVIMFLDTKHRVDRLVKHLLKSGVRAAGLHGGKSQPQRTRTLAQFKDGQVTALV 349

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV  +  + +  +
Sbjct: 350 ATNVAARGIHVDNLDLVVNVDPPGDHKDYLHRGGRTARAGESGSVVTLVTPDQRREMTRL 409

Query: 361 EKL 363
             L
Sbjct: 410 MSL 412


>gi|221056789|ref|XP_002259532.1| RNA helicase-1 [Plasmodium knowlesi strain H]
 gi|193809604|emb|CAQ40305.1| RNA helicase-1, putative [Plasmodium knowlesi strain H]
          Length = 669

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 131/358 (36%), Positives = 206/358 (57%), Gaps = 18/358 (5%)

Query: 24  PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-----PRTLIL 78
           PT IQ++ +P +L   D+ GIA TG+GKT  FVLP++ I  +G  R ++     P  LI+
Sbjct: 242 PTQIQMQGLPSILLGRDIIGIAFTGSGKTIVFVLPLVMICLEGELRCQIEEGEGPLGLII 301

Query: 79  EPTRELAAQVAD------NFEKYGKNYNLTVAL-LIGGIPFEAQNKKLERGADVLICTPG 131
            P+RELA Q  +       F   G  Y +  +L +IGG+    Q +++++G  +++ TPG
Sbjct: 302 CPSRELATQTHNVIKYFCEFLHEGGKYPMLRSLCMIGGVSTFDQGREIQKGIHMVVATPG 361

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+ D  N+ ++ +     L  DEADR++D+GF   ++N        RQTLLFSATM  ++
Sbjct: 362 RLNDMLNKKRMTLEQCRYLCFDEADRLIDLGFEEEVRNTLDHFSRQRQTLLFSATMPKKI 421

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
           Q+ +++ L NP  I +N   + A  ++      Y +   K + L ++LQ   T    +IF
Sbjct: 422 QEFAKSTLVNP--IIINVGRAGAANLDVIQEVEYVKEELKLSYLLEVLQK--TGPPVLIF 477

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           C  KK+V ++   L  +G +  AIHGN+ Q  R + ++ F+EG   ++V +D+A++GLD 
Sbjct: 478 CENKKDVDDVHEYLLLKGVNAIAIHGNLGQTERQEAINLFREGKKDILVGTDVASKGLDF 537

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK--EDIKHIDAIEKLIEKK 367
           P + HV N+D+P   ENY+HRIGRTGR G+ G A T + K  E+   +D    LIE K
Sbjct: 538 PSIEHVINYDMPKDIENYVHRIGRTGRCGKTGIATTFINKNQEEAILLDLKALLIEAK 595


>gi|298708839|emb|CBJ30797.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 819

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 126/357 (35%), Positives = 204/357 (57%), Gaps = 5/357 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   +   ++  GY  PTP+Q K++P+ L   DV  +A+TG+GKTA+F++P+L  
Sbjct: 12  FQAMGLGQDLFRGIMAMGYKVPTPVQRKSLPVTLAGADVVVMARTGSGKTAAFLIPVLEK 71

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G    +M  R++IL PTRELA Q      K  K  +L +ALL+GG   + Q   L  
Sbjct: 72  L--GSHSHKMGARSIILSPTRELAVQTLTFARKMSKLKDLRMALLVGGDSMDKQFTALAD 129

Query: 122 GADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++ H     +  + ++E++V DEADR+ +MGF   ++ I   VP  RQ+
Sbjct: 130 NPDIIIATPGRLMHHLQEVPEFTLRSVEVVVFDEADRLFEMGFAEQLREIMRGVPEERQS 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  +L + +   L++P  I ++T S  +  +   F+ T     K  ALL  L +
Sbjct: 190 LLFSATMPKQLVQFARAGLKDPVLIRLDTESKISTELSLAFL-TCRSLDKPAALLFLLRE 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   + +   L   L++ G +   ++G +DQ +R   L  F++G  +L+V
Sbjct: 249 VIPEGDMTIVFVATRHHAEFLHELLKEAGTASSVVYGAMDQEARSIHLDKFRKGKTKLLV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +D+AARG+D+P + +V N+  P   + ++HR+GR  R GR G A+++V  E+I H+
Sbjct: 309 VTDVAARGIDVPLLNNVINYAFPPAPKLFVHRVGRAARQGRTGTAYSIVDPEEIPHM 365


>gi|116199007|ref|XP_001225315.1| eukaryotic initiation factor 4A-12 [Chaetomium globosum CBS 148.51]
 gi|118573324|sp|Q2GWJ5|FAL1_CHAGB RecName: Full=ATP-dependent RNA helicase FAL1
 gi|88178938|gb|EAQ86406.1| eukaryotic initiation factor 4A-12 [Chaetomium globosum CBS 148.51]
          Length = 394

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 119/362 (32%), Positives = 198/362 (54%), Gaps = 11/362 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + ML +
Sbjct: 29  FESMSLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQV 88

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 89  IDTA---VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYG 145

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 146 QHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVVV 205

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 206 VSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTL- 264

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG++ Q+ R  I+ +F++G  +++
Sbjct: 265 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVL 320

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 321 ISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRD 380

Query: 360 IE 361
           IE
Sbjct: 381 IE 382


>gi|240280856|gb|EER44360.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Ajellomyces
           capsulatus H143]
          Length = 1200

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 132/373 (35%), Positives = 201/373 (53%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  + +  +    Y  PT IQ + IP ++   DV G+A+TG+GKT +F+LPM   
Sbjct: 566 WSQCGLGVQTLDVIRKLNYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRH 625

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R    M  P  LI+ PTRELA Q+    + + K  NL      GG P + Q  +L+
Sbjct: 626 IMDQRPLENMEGPIGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELK 685

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   V   
Sbjct: 686 RGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRILGNVRPQ 745

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT    ++ ++   L  P  I V   S  A  I    V    Q +K   LL  
Sbjct: 746 RQTVLFSATFPRNMEALARKTLAKPVEIIVGGKSVVAPEITQ-IVEVRNQDTKFVRLLAL 804

Query: 238 LLQSQDTMKN----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L +     KN     +IF ++++    L   L  +G+   +IHG  DQ  R   + +FK 
Sbjct: 805 LGELYADDKNEDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIDDFKA 864

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 865 GVFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 924

Query: 354 IKHIDAIEKLIEK 366
            ++   I K +++
Sbjct: 925 ERYSVDISKALKQ 937


>gi|256786770|ref|ZP_05525201.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
 gi|289770661|ref|ZP_06530039.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
 gi|289700860|gb|EFD68289.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
          Length = 528

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 124/363 (34%), Positives = 192/363 (52%), Gaps = 9/363 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L L  +++ A+ D G  +P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 57  FAELDLPARMLAALGDQGVTEPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 116

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y +   L  A ++GG+    Q   L  G
Sbjct: 117 TAGKRAEPRRPLALVLVPTRELAQQVTDALTPYARAVGLRSATVVGGMSIGRQAGALRSG 176

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D  +RG   + ++ I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 177 AEVVVATPGRLKDLIDRGDCALGDVTITVLDEADQMTDMGFMPQVTALLDQVAADGQRML 236

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + K+   +L +P    V+  +    T+EH  +    +  ++  +       +
Sbjct: 237 FSATLDRNVDKLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVQDEDKQRATI-------E 289

Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++G  I+F + K  V  L   L K G     +HG   Q  R + L+ FK+G +  +V
Sbjct: 290 IAARDGRVIMFLDTKHRVDRLVKHLLKSGVRAAGLHGGKSQPQRTRTLAQFKDGQVTALV 349

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV  +  + +  +
Sbjct: 350 ATNVAARGIHVDNLDLVVNVDPPGDHKDYLHRGGRTARAGESGSVVTLVTPDQRREMTRL 409

Query: 361 EKL 363
             L
Sbjct: 410 MSL 412


>gi|225559706|gb|EEH07988.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
           capsulatus G186AR]
          Length = 1201

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 132/373 (35%), Positives = 201/373 (53%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  + +  +    Y  PT IQ + IP ++   DV G+A+TG+GKT +F+LPM   
Sbjct: 568 WSQCGLGVQTLDVIRKLNYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRH 627

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R    M  P  LI+ PTRELA Q+    + + K  NL      GG P + Q  +L+
Sbjct: 628 IMDQRPLENMEGPIGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELK 687

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   V   
Sbjct: 688 RGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRILGNVRPQ 747

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT    ++ ++   L  P  I V   S  A  I    V    Q +K   LL  
Sbjct: 748 RQTVLFSATFPRNMEALARKTLAKPVEIIVGGKSVVAPEITQ-IVEVRNQDTKFVRLLAL 806

Query: 238 LLQSQDTMKN----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L +     KN     +IF ++++    L   L  +G+   +IHG  DQ  R   + +FK 
Sbjct: 807 LGELYADDKNEDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIDDFKA 866

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 867 GVFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 926

Query: 354 IKHIDAIEKLIEK 366
            ++   I K +++
Sbjct: 927 ERYSVDISKALKQ 939


>gi|300122033|emb|CBK22607.2| unnamed protein product [Blastocystis hominis]
          Length = 408

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 199/376 (52%), Gaps = 11/376 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +GL+P ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKT  F + +L  ++ 
Sbjct: 1   MGLNPDLLRGIYAYGFEKPSAIQQRAILPIIKGRDVIAQSQSGTGKTGVFCIGVLQNIDP 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
                +    LIL PTRELA Q        G    +     +GG       ++L+ G  V
Sbjct: 61  SLMETQ---ALILSPTRELAEQSQKVLLSIGDCMKVQCHACVGGKSLSDDIRRLDYGVQV 117

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           +  TPGR+ D  NR  L   NI+ILVIDE D ML+ GF   + +I   +P   Q +L SA
Sbjct: 118 VSGTPGRVYDMINRRHLRTRNIKILVIDEGDEMLNQGFKEQLYDIYRYLPPATQVVLVSA 177

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLLQSQ 242
           TM  E+  ++  F+  P +I V     T E I+  FVA   +   +   C L   L    
Sbjct: 178 TMPKEVLDMTSKFMNEPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYNNL---- 233

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L +  F+V ++HG++ Q+ R +I+  F+ G  ++++A+
Sbjct: 234 -TITQAVIFCNTRRKVEWLAAKLREANFTVSSMHGDMPQKERDRIMEEFRAGNSRVLIAT 292

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+  RGLD+  V  V N+D+PN  E YIHRIGR+GR GR G     V  EDI  +  IE+
Sbjct: 293 DVWGRGLDVQQVSLVINYDLPNSRELYIHRIGRSGRFGRKGVGINFVTNEDISVLRDIEQ 352

Query: 363 LIEKKVDWLNGDLSSL 378
               ++D +  +++ L
Sbjct: 353 YYSTQIDEMPMNINDL 368


>gi|126343381|ref|XP_001380653.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
           [Monodelphis domestica]
          Length = 744

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 132/354 (37%), Positives = 202/354 (57%), Gaps = 19/354 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   +S + +  +   G     PIQ+K    V +  D+   A+TGTGKT SF +P++  
Sbjct: 144 FSRFPISEETIKLLKARGVTYLFPIQVKAFSPVYEGKDLIAQARTGTGKTFSFAIPLIEK 203

Query: 63  LEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ +    + R P+ L+L PTRELA QVA +F+   +   L+VA   GG P++ Q   +
Sbjct: 204 LQRDQEELKKTRSPKVLVLAPTRELANQVAKDFQDITRK--LSVACFYGGTPYQGQINHI 261

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            RG D+L+ TPGRI DH   G+L ++ +  +V+DE D+MLDMGF   +++I      T  
Sbjct: 262 RRGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDMGFADQVEDIIHGSYKTGS 321

Query: 179 ----QTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTAETIEHCFVATYAQYSK 230
               QTLLFSAT    + KV++ +++  K  E++        TA T+EH  +A    +S+
Sbjct: 322 EDNPQTLLFSATCPQWVYKVAKKYMKT-KYEEIDLVGKMTQKTATTVEH--LAIQCHWSQ 378

Query: 231 KCALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A++  ++Q         IIFC  KKNV  +  +   +  + C +HG+I Q  R   L 
Sbjct: 379 RAAVIGDVIQVYSGNDGRAIIFCETKKNVAEMALNPHIKQNAQC-LHGDIAQSQREITLK 437

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
            F+EG+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 438 GFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 491


>gi|281345859|gb|EFB21443.1| hypothetical protein PANDA_005663 [Ailuropoda melanoleuca]
          Length = 752

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 138/376 (36%), Positives = 212/376 (56%), Gaps = 20/376 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P+L  
Sbjct: 75  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 134

Query: 63  LEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     R++   T     LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +
Sbjct: 135 L----YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE 190

Query: 118 KLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++    ++L+CTPGR+L H +        N+++LV+DEADR+LDMGF   +  I   +P 
Sbjct: 191 RIN-NINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPK 249

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCAL 234
            RQTLLFSAT T  ++ ++   L+NP+ + V+  +  ST  T+E  ++    Q  +K ++
Sbjct: 250 KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQ--QKISV 307

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL--EKQGFSVCAIHGNIDQRSRMKILSNFK 292
           L   L+S    K  I+F +  K V  L       + G S+ A+HG   Q  RM++ + F 
Sbjct: 308 LYSFLRSH-LKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFV 366

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                ++ A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   
Sbjct: 367 RKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPS 426

Query: 353 DIKHIDAIEKLIEKKV 368
           + K +  +++L++KKV
Sbjct: 427 EEKGM--VQQLLQKKV 440


>gi|325089715|gb|EGC43025.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Ajellomyces
           capsulatus H88]
          Length = 1199

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 132/373 (35%), Positives = 201/373 (53%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  + +  +    Y  PT IQ + IP ++   DV G+A+TG+GKT +F+LPM   
Sbjct: 566 WSQCGLGVQTLDVIRKLNYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRH 625

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R    M  P  LI+ PTRELA Q+    + + K  NL      GG P + Q  +L+
Sbjct: 626 IMDQRPLENMEGPIGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELK 685

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   V   
Sbjct: 686 RGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRILGNVRPQ 745

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT    ++ ++   L  P  I V   S  A  I    V    Q +K   LL  
Sbjct: 746 RQTVLFSATFPRNMEALARKTLAKPVEIIVGGKSVVAPEITQ-IVEVRNQDTKFVRLLAL 804

Query: 238 LLQSQDTMKN----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L +     KN     +IF ++++    L   L  +G+   +IHG  DQ  R   + +FK 
Sbjct: 805 LGELYADDKNEDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIDDFKA 864

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 865 GVFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 924

Query: 354 IKHIDAIEKLIEK 366
            ++   I K +++
Sbjct: 925 ERYSVDISKALKQ 937


>gi|195131547|ref|XP_002010212.1| GI14822 [Drosophila mojavensis]
 gi|193908662|gb|EDW07529.1| GI14822 [Drosophila mojavensis]
          Length = 963

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 128/380 (33%), Positives = 207/380 (54%), Gaps = 21/380 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L P ++  +   G+ KPT IQ +  P+ L   D+ GIAQTG+GKT +++LP + 
Sbjct: 237 NFEESSLPPHIIDEMKRQGFTKPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIV 296

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNK 117
            +      +R   P  L+L PTRELA Q+      YG      +    + GG     Q +
Sbjct: 297 HISNQPPLMRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQAR 356

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LERG +V+I TPGR++D        +     LV+DEADRMLDMGF P I+ I   +   
Sbjct: 357 DLERGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 416

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKC 232
           RQ +++SAT   E+Q ++ +FL +  +I + + + +A     + +E C        ++K 
Sbjct: 417 RQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEIC------NENEKP 470

Query: 233 ALLQQLLQSQDTMKNG------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
            LL +LL+   +  N       IIF   K  V ++   +  +G+   +IHG+  Q  R  
Sbjct: 471 QLLVRLLKEITSPSNNGGSNKIIIFVETKIKVEDILQIIRNEGYVATSIHGDKSQSERDS 530

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
           +L +F+ G   +++A+D+A+RGLD+ D+ +V N+D PN +ENY+HRIGRTGR  + G A+
Sbjct: 531 VLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAY 590

Query: 347 TLVAKEDIKHIDAIEKLIEK 366
           T    ++ K    +  ++E+
Sbjct: 591 TFFTPDNAKQARELISVLEE 610


>gi|261202786|ref|XP_002628607.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis
           SLH14081]
 gi|225556973|gb|EEH05260.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus G186AR]
 gi|239590704|gb|EEQ73285.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis
           SLH14081]
 gi|239612419|gb|EEQ89406.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis ER-3]
 gi|240277518|gb|EER41026.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus H143]
 gi|325093598|gb|EGC46908.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus H88]
 gi|327355221|gb|EGE84078.1| ATP-dependent RNA helicase FAL1 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 399

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 121/379 (31%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L +
Sbjct: 27  FEDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQV 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     +R  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 87  ID---TVLRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDHG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 144 QHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVV 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 204 VSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTL- 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++
Sbjct: 263 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 319 ISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRD 378

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 379 IELYYSTQIDEMPMNVADL 397


>gi|50303057|ref|XP_451466.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660682|sp|Q6CX73|FAL1_KLULA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49640597|emb|CAH03054.1| KLLA0A10659p [Kluyveromyces lactis]
          Length = 398

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 204/364 (56%), Gaps = 13/364 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P ++  +   G+  P+ IQ + I  ++   DV   AQ+GTGKTA+F + +L  
Sbjct: 25  FESMNLKPDLLRGIYFYGFEYPSSIQSRAISQIISGKDVIAQAQSGTGKTATFTIGLLQA 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++   ++ +  + L+L PTRELA+Q        G   N+T     GG   +   KK+ + 
Sbjct: 85  ID---SKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKN 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML--DMGFIPYIQNITSLVPFTRQT 180
             V+  TPGR+LD   R  L + N +ILV+DEAD +L   +GF   I +I + +P T Q 
Sbjct: 142 CQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQV 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQ 237
           ++ SATM+ ++ ++++ F+ +P +I V     + + I+  +V    +   +   C L   
Sbjct: 202 VVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDS 261

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L     T+   +IFCN +K V  L   L +  FSV ++HG++ Q  R +++++F+ G  +
Sbjct: 262 L-----TITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKAR 316

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++++D+ ARG+D+  +  V N+D+P+  ENYIHRIGR+GR GR G A   + KE+   +
Sbjct: 317 VLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKL 376

Query: 358 DAIE 361
             IE
Sbjct: 377 KEIE 380


>gi|302783853|ref|XP_002973699.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii]
 gi|302787961|ref|XP_002975750.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii]
 gi|300156751|gb|EFJ23379.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii]
 gi|300158737|gb|EFJ25359.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii]
          Length = 445

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 132/380 (34%), Positives = 213/380 (56%), Gaps = 18/380 (4%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTI-PLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           A LG+ P++V A+     +   P+Q   +    ++  D    A+TGTGKT +F LP+L  
Sbjct: 7   AKLGIDPEIVRALAQKNIINLFPVQQSAVYQPAMKGRDFIARAKTGTGKTLAFGLPILHT 66

Query: 61  TILEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             +E+  A  R     PR +++ PTRELA QV         +  LT+  + GG+  E+Q 
Sbjct: 67  ITVERREATSRTQPGCPRCIVMAPTRELAKQVEKELTSTAPH--LTLVCIYGGVSIESQR 124

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + LER  DV++ TPGR++D   RG LL+N ++ +V+DEAD+ML  GF   ++ I   +P 
Sbjct: 125 RSLERPIDVVVGTPGRVIDMLQRGSLLLNRVKFMVLDEADQMLATGFAEDVEKIMERLPK 184

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIE--HCFVATYAQYSKKC 232
            RQT++FSATM   ++ +   F+Q+P  +++  +     AE I+   C  + Y     K 
Sbjct: 185 QRQTMMFSATMPSWVKNLLRRFMQDPLVVDLVGDNDEKLAEGIKLYSCEASDY----NKG 240

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL++L+ S       I+F   K++  N+  ++ +      A+HG+I Q  R + LS F+
Sbjct: 241 PLLKELVNSYGKGGKVIVFAKTKRDTHNVAQAMSRS-VPCEALHGDIPQFQRERTLSGFR 299

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +G   ++VA+D+AARGLDIP+V  V +++VP  +E ++HR GRTGRAG+ G A  +    
Sbjct: 300 DGRFSVLVATDVAARGLDIPNVDLVIHYEVPGDSETFVHRSGRTGRAGKKGVAILMHTYA 359

Query: 353 DIKHIDAIEKLIEKKVDWLN 372
             +  D IE  +  + + LN
Sbjct: 360 QGRVRDTIEHDVGCRFEALN 379


>gi|307214987|gb|EFN89832.1| Probable ATP-dependent RNA helicase DDX27 [Harpegnathos saltator]
          Length = 734

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 127/353 (35%), Positives = 199/353 (56%), Gaps = 2/353 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + LS  ++ A+    ++ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP L  
Sbjct: 157 FYQMNLSRPLLKAITTMNFLTPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPTLER 216

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++ K      + R L+L PTREL  QV    ++  +  ++   L +GG+  + Q   L R
Sbjct: 217 LMYKPLDGPAVTRVLVLVPTRELGVQVYQVTKQLSQFTSVETGLSVGGLDVKVQESILRR 276

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++DH  N     ++ IE+L++DEADRMLD  F   ++ I +    +RQT
Sbjct: 277 NPDIVIATPGRLIDHLRNTPTFSLDIIEVLILDEADRMLDEYFAEQMKYIVNQCSRSRQT 336

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+E++ ++   L  P +I V++    A  +   F+    +       +   L 
Sbjct: 337 MLFSATMTEEVKDLAAVSLDKPIKIFVDSNQDVAFNLRQEFIRIRKEREGDREAILAALI 396

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F   KK    L   L   G  V  +HGN+ Q  R++ L  FK+  I +++
Sbjct: 397 CRTFHDHVMVFVQTKKQAHRLHILLGLLGVKVGELHGNLTQPQRLENLQEFKDEIINILI 456

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           A+D+AARGLDI  V  V NF +P   ++YIHR+GRT RAGR G + +L  +++
Sbjct: 457 ATDVAARGLDISGVKTVINFVMPATLQHYIHRVGRTARAGRVGVSVSLAGEQE 509


>gi|255728265|ref|XP_002549058.1| hypothetical protein CTRG_03355 [Candida tropicalis MYA-3404]
 gi|240133374|gb|EER32930.1| hypothetical protein CTRG_03355 [Candida tropicalis MYA-3404]
          Length = 531

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 130/344 (37%), Positives = 208/344 (60%), Gaps = 12/344 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEKGRARVRMPRTLILE 79
           + KPTPIQ  + P +L + DV G+A+TG+GKT +F +P + +I+      + +   L + 
Sbjct: 140 FPKPTPIQSVSWPFLLSKKDVIGVAETGSGKTFAFGVPAINSIITTKNKNLSV---LCIS 196

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA Q+ DN  +   + N+    + GG+  + Q +K+ + A+V++ TPGR++D  N 
Sbjct: 197 PTRELALQIYDNLIELTNDTNVKCVAVYGGVSKDEQIQKI-KTANVVVATPGRLVDLIND 255

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPFTRQTLLFSATMTDELQKVSENF 198
           G + ++NI+ LV+DEADRML+ GF   I+ I +S     RQTL+F+AT   E+++++ NF
Sbjct: 256 GAINLSNIDYLVLDEADRMLEKGFEEDIKRIISSTNAEDRQTLMFTATWPKEVRELANNF 315

Query: 199 LQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLLQSQ----DTMKNGIIFCN 253
           +++P ++ V      +A       V    ++ K+  L+  L + Q    D+    ++F  
Sbjct: 316 MKSPIKVTVGDRDELSANKRITQIVEVVNKFDKEKKLINLLHKYQGNNNDSENKILVFAL 375

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            KK    + + L++  F V AIHG++ Q+ R + L++FK G   L++A+D+AARGLDIP+
Sbjct: 376 YKKEASRIENLLKRNRFQVAAIHGDLSQQQRTQALNSFKSGQCNLLLATDVAARGLDIPN 435

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           V  V N   P   E+Y+HRIGRTGRAG+ G A TL   ED KH+
Sbjct: 436 VKVVINLTFPLTIEDYVHRIGRTGRAGKTGIAHTLFT-EDEKHL 478


>gi|19552665|ref|NP_600667.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62390333|ref|YP_225735.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
           13032]
 gi|145295583|ref|YP_001138404.1| hypothetical protein cgR_1510 [Corynebacterium glutamicum R]
 gi|21324218|dbj|BAB98843.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
           ATCC 13032]
 gi|41325670|emb|CAF21459.1| Superfamily II DNA or RNA helicase [Corynebacterium glutamicum ATCC
           13032]
 gi|140845503|dbj|BAF54502.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 448

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 126/356 (35%), Positives = 189/356 (53%), Gaps = 5/356 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L  ++V  +   G  +  PIQ   IP  L   DV G   TG+GKT +F LPM+T 
Sbjct: 4   FLELKLPDEIVRELRSQGITEAFPIQEAAIPDALAGKDVLGRGPTGSGKTFTFGLPMITR 63

Query: 63  LEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + G ++   PR L+L PTRELAAQV +  +   +   L V  ++GG+        L  
Sbjct: 64  LARSGASKPGRPRGLVLVPTRELAAQVRERLDDPARVMGLRVLEVVGGVNINRNITALAT 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+L+ TPGR  D  N+ KL + ++ +  +DEAD+M DMGF+P ++ +  L P   Q L
Sbjct: 124 PVDILVATPGRAQDLINQKKLSLADVSVTALDEADQMADMGFLPQVKKLMDLTPKNGQRL 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ K+ + +L NP         +  +T+EH  +    +  +   +L    + 
Sbjct: 184 LFSATLDGDVSKLVDRYLHNPITHSTAPVQAAVDTMEHYRLLVGGRDPRNSVVLSIAARE 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I+F   K  V      L + G +   IHG+  Q +R   L+ F +G+I ++VA
Sbjct: 244 GKT----IMFMRTKHGVDRQVKKLRRVGVNAVGIHGDKGQSTRTNALAGFADGSIPVLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +D+AARG+D+ DV  V + D P   + Y+HR GRT RAG  G   TLV  E IK +
Sbjct: 300 TDIAARGIDVDDVSLVVHVDPPAEHKAYLHRAGRTARAGTSGTVVTLVMDEQIKEV 355


>gi|330804668|ref|XP_003290314.1| hypothetical protein DICPUDRAFT_95112 [Dictyostelium purpureum]
 gi|325079564|gb|EGC33158.1| hypothetical protein DICPUDRAFT_95112 [Dictyostelium purpureum]
          Length = 706

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 131/394 (33%), Positives = 206/394 (52%), Gaps = 28/394 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ L   ++  +  A Y KPTP+Q   +P++ +  D+   AQTG+GKTA+F+LP++
Sbjct: 232 ISFTDVDLGDVILSNIKYAKYTKPTPVQKSALPIIFKNRDLMACAQTGSGKTAAFLLPII 291

Query: 61  TIL------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
           + +            + G  R   PR L+L PTRELA Q+ +   K+     +   ++ G
Sbjct: 292 SGILLDGAPEPPASYKPGVPRAAAPRALVLAPTRELAQQIYNEANKFSYGSPIQSVVIYG 351

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G     Q  +L++G D+L+ T GR++D   RG++ ++ I+ LV+DEADRMLDMGF P I+
Sbjct: 352 GAEVFNQINELDKGVDILVATTGRLVDLLLRGRVTLSKIKYLVLDEADRMLDMGFEPQIR 411

Query: 169 NITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
            I           RQTL+FSAT   ++Q ++ +FL N   ++V    +T    +   +  
Sbjct: 412 QIIGDFDMPGSRDRQTLMFSATFPKQIQALASDFLSNYIFLKVGVVGTTQNITQR--IEY 469

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
            ++  K   LL  +          +IF   K++   L   L  +GF    IHG++ Q  R
Sbjct: 470 VSEEEKNSYLLDYISGLNIDGALTLIFVETKRSCDTLTFFLNNRGFPATCIHGDLTQSER 529

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
              L +F       +VA+D+A+RGL IP+V  V N+D+P     Y+HRIGRTGRAG+ G 
Sbjct: 530 ENALHSFSSFQTPFLVATDIASRGLHIPNVMVVINYDLPTDVHIYVHRIGRTGRAGKKGL 589

Query: 345 AFTL-------VAKEDIKHIDAIEKLIEKKVDWL 371
           + +        V  E +K + A  + I    DW 
Sbjct: 590 SISFFNEKNKPVGGELLKLLKASNQEIP---DWF 620


>gi|50420221|ref|XP_458643.1| DEHA2D04048p [Debaryomyces hansenii CBS767]
 gi|74602737|sp|Q6BT27|FAL1_DEBHA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49654310|emb|CAG86782.1| DEHA2D04048p [Debaryomyces hansenii]
          Length = 399

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 122/364 (33%), Positives = 198/364 (54%), Gaps = 11/364 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+  P+ IQ + I  ++   D    AQ+GTGKTA+F + ML +
Sbjct: 28  FESMNLKTDLLKGIYGYGFEAPSAIQSRAIMQIISGKDTIAQAQSGTGKTATFSIGMLEV 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    + +  + LIL PTRELA Q+    +  G   N+     IGG       KKL++G
Sbjct: 88  ID---TKSKDCQALILSPTRELAQQIQSVVKHLGDYMNVHTHACIGGTHVGEDIKKLQQG 144

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR++D   R  L   NI+++++DEAD ++  GF   I  I   +P   Q ++
Sbjct: 145 QQIVSGTPGRVVDMIKRRNLATRNIKMMILDEADELMTKGFKEQIYEIYRYLPPGVQVVV 204

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT++ E+ +V+  F  +P +I V     T E I+   +    +   +   C L   L 
Sbjct: 205 VSATLSREVLEVTGKFTTDPVKILVKRDDITLEGIKQYHIQCEKEDWKFDTLCDLYDSL- 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K  V  L   ++K  F+V A+HG++ Q  R  I+++F+ G  +++
Sbjct: 264 ----TITQAVIFCNTKVKVNWLTDQMKKANFTVVAMHGDMKQDERDSIMNDFRTGNSRVL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENY+HRIGR+GR GR G A  LV KED+  +  
Sbjct: 320 ISTDVWARGIDVQQVSLVINYDLPTDKENYVHRIGRSGRFGRKGVAINLVTKEDVDELRD 379

Query: 360 IEKL 363
           IE+ 
Sbjct: 380 IERF 383


>gi|325179839|emb|CCA14242.1| Os08g0159900 putative [Albugo laibachii Nc14]
          Length = 1173

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 129/359 (35%), Positives = 197/359 (54%), Gaps = 15/359 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + ++  G S ++   +   GYV+P  IQ + +P ++   DV GIA+TG+GKT +F+LPM 
Sbjct: 571 LKWSQCGFSLRLQQLIQKHGYVEPFAIQRQALPAIMAGRDVIGIAKTGSGKTLAFLLPMF 630

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   L++G      P  LI+ P RELA Q+    +++ K+  L    + GG     
Sbjct: 631 RHILHQPPLKEGEG----PIGLIMAPARELAQQIYVEAKRFAKDLGLRATAVYGGSSVSE 686

Query: 115 QNKKLERGADVLICTPGRILD--HFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNIT 171
           Q   L+RG++++ICTPGR++D    + GK++ +  +  +V+DEADRM DMGF P I  I 
Sbjct: 687 QIGNLKRGSEIVICTPGRMIDILCMSAGKVVSLQRVSYVVLDEADRMFDMGFEPQITKII 746

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
             +   RQTLLFSAT    ++ ++   L  P  I V   S+ +  I   +V    +  K 
Sbjct: 747 MNIRPDRQTLLFSATFPRAVETLARKVLLKPVEITVGARSTASGDITQ-YVEVREESDKF 805

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LLQ LL       N ++F N ++    +   L K G+   ++HG  DQ  R   + +F
Sbjct: 806 MRLLQ-LLGYWYGKGNVLVFVNTQQTCDQIFQDLMKAGYPALSLHGGKDQIDRDYTIDDF 864

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           K     LMVA+ +A RGLD+ D+  V N+  PN  E+Y+HR+GRTGRAGR G A+T ++
Sbjct: 865 KRQVRTLMVATSVAGRGLDVKDLVLVVNYHCPNHLEDYVHRVGRTGRAGRKGTAYTFIS 923


>gi|322787030|gb|EFZ13254.1| hypothetical protein SINV_10425 [Solenopsis invicta]
          Length = 775

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 124/355 (34%), Positives = 199/355 (56%), Gaps = 2/355 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  V+  +L  GY  PTPIQ KTIPL L+  DV  +A+TG+GKTA F++P+   
Sbjct: 38  FQSMALSFPVLKGILKRGYKIPTPIQRKTIPLALEGRDVVAMARTGSGKTACFLIPLFEK 97

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  +A+    R LIL PTRELA Q     ++ G+      ++++GG   + Q   +   
Sbjct: 98  LKARQAKA-GARALILSPTRELALQTLKFIKELGRFTGFKASVILGGDSMDDQFNAIHGN 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR L       L + N+E +V DEADR+ +MGF   IQ I + +P +RQTLL
Sbjct: 157 PDIIVATPGRFLHICVEMDLQLKNVEYVVFDEADRLFEMGFGEQIQEIVNRLPESRQTLL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L   ++  L +P  + ++  S   E +   F+    +  K   LL  L +  
Sbjct: 217 FSATLPKILVDFAKAGLSDPVLLRLDVESKLPEGLSLSFITCRPE-EKLAVLLSLLKRII 275

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF     +V  +   L+K G S   I+ N+D  +R    + F+ G +++++ +
Sbjct: 276 KPESQTIIFVETMHHVEYIHQILDKAGISNTFIYSNLDPSARKINAAKFQMGKVRVLIVT 335

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           D+AARG+DIP +  V NF+ P +++ ++HR+GR  RAGR G A+ +V+ ++  ++
Sbjct: 336 DVAARGIDIPHLDFVINFNFPAKSKLFVHRVGRCARAGRAGTAYNIVSSDEYPYL 390


>gi|325676737|ref|ZP_08156410.1| ATP-dependent RNA helicase [Rhodococcus equi ATCC 33707]
 gi|325552285|gb|EGD21974.1| ATP-dependent RNA helicase [Rhodococcus equi ATCC 33707]
          Length = 712

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 122/349 (34%), Positives = 188/349 (53%), Gaps = 6/349 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++GL   VV A+       P+PIQ   IP  +   ++ G AQTG+GKT +F LPML  
Sbjct: 48  FAEIGLPEPVVAALARNSITVPSPIQAMAIPDAIAGKNILGRAQTGSGKTLAFGLPMLAR 107

Query: 63  LEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L +   R   + PR L+L PTRELA QV D+   Y  +  L V   +GG PF  Q  +L 
Sbjct: 108 LARHEDRPAPKRPRALVLVPTRELAFQVVDSLTPYAGSLGLNVRAAVGGTPFTKQVDQLR 167

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+ DH  +   ++  IE+  +DEAD+M DMGF+P ++ + +  P   Q 
Sbjct: 168 RGVDILVATPGRLGDHLRQNTCVLGEIEMTALDEADQMADMGFLPEVRTLLADTPNDSQR 227

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ ++++ +   FL   +        ++  T++H  +        K A+L ++  
Sbjct: 228 LLFSATLDNDVKTLVREFLPEHELHSTQDGRASVTTMDHYVL--LVDRGDKDAVLAEIAS 285

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      I+F   K     +   L ++G +  A+HG   Q  R ++L  FK G   ++V
Sbjct: 286 REGGRT--IMFARTKLGAEGITERLREKGVAAEALHGGKAQNQRTRVLERFKTGRTPVLV 343

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           A+D+AARG+ +  +  V + D P   ++Y+HR GRT RAG  G    +V
Sbjct: 344 ATDVAARGIHVDGIDLVVHVDPPQDHKDYLHRAGRTARAGEAGVVAAIV 392


>gi|67902058|ref|XP_681285.1| hypothetical protein AN8016.2 [Aspergillus nidulans FGSC A4]
 gi|74656894|sp|Q5AUL4|FAL1_EMENI RecName: Full=ATP-dependent RNA helicase fal1
 gi|40740448|gb|EAA59638.1| hypothetical protein AN8016.2 [Aspergillus nidulans FGSC A4]
 gi|259480767|tpe|CBF73711.1| TPA: ATP-dependent RNA helicase fal1 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5AUL4] [Aspergillus
           nidulans FGSC A4]
          Length = 399

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 121/379 (31%), Positives = 204/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F +  L +
Sbjct: 27  FEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISALQV 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 87  ID---TVVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 144 QHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVV 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P R+ V     T E I+  F+A   +   +   C L   L 
Sbjct: 204 VSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTL- 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++
Sbjct: 263 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  
Sbjct: 319 ISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRD 378

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 379 IELYYSTQIDEMPMNVADL 397


>gi|238878985|gb|EEQ42623.1| eukaryotic initiation factor 4A-12 [Candida albicans WO-1]
          Length = 399

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 123/369 (33%), Positives = 202/369 (54%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P ++  +   G+  P+ IQ + I  ++   D    AQ+GTGKTA+F + ML +
Sbjct: 28  FESMNLKPDLLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEV 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    + +  + LIL PTRELA Q+ +  +  G   N+     IGG       KKL++G
Sbjct: 88  ID---TKSKECQALILSPTRELAIQIQNVVKHLGDYMNIHTHACIGGKNVGEDVKKLQQG 144

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR++D   R  L   NI++L++DEAD +   GF   I  I   +P + Q ++
Sbjct: 145 QQIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYEIYKHLPPSVQVVV 204

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F  +P +I V     +   I+  +V    +   +   C L   L 
Sbjct: 205 VSATLPREVLEMTSKFTTDPVKILVKRDEISLSGIKQYYVQCEREDWKFDTLCDLYDNL- 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K  V  L   ++KQ F+V A+HG++ Q  R  I+++F+ G  +++
Sbjct: 264 ----TITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFRRGNSRVL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A  L+ K+D+  +  
Sbjct: 320 ISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVVTLKE 379

Query: 360 IEKLIEKKV 368
           +EK    K+
Sbjct: 380 LEKYYSTKI 388


>gi|326772300|ref|ZP_08231585.1| ATP-dependent RNA helicase [Actinomyces viscosus C505]
 gi|326638433|gb|EGE39334.1| ATP-dependent RNA helicase [Actinomyces viscosus C505]
          Length = 540

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 129/369 (34%), Positives = 201/369 (54%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA+LG+   +  A LDA G+  P PIQ  T+P  L   DV G  +TG+GKT +F LP++ 
Sbjct: 25  FAELGVDSDL-AADLDARGFTAPFPIQAATLPDTLAGRDVLGRGRTGSGKTLAFSLPLVQ 83

Query: 62  IL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L ++ +AR   P  L+L PTRELA Q+A+  E   +  ++ V  + GG+  + Q K L+
Sbjct: 84  RLAQQDKARPGHPIGLVLAPTRELALQIAEVIEPLARVVDMDVTTIFGGVSAKPQEKALK 143

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++  PGR+LD   +G + ++ +EI V+DEAD M D+GF+P ++ I    P   Q 
Sbjct: 144 AGVDVVVACPGRLLDLMGQGLVSLDEVEITVLDEADHMADLGFLPNVRRILRATPQRGQR 203

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ + +  + + FL +P +  V+  +S  + + H  V   A  + K  ++++L  
Sbjct: 204 LLFSATLDNGVDTLVKEFLHDPLQHSVDPSTSPVDAMTH-RVWMVADKTAKDGIVRRLAS 262

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      I+F   K     L   L + G     + GN+ Q +R + +  F  G + +MV
Sbjct: 263 GEGQR---ILFTRTKHLARRLARKLVQAGIPAVELQGNMSQNARERAMRAFSTGQVHVMV 319

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V  V + D P   + Y+HR GRT RAG  G   TLV  E    +  +
Sbjct: 320 ATDIAARGIDVSGVELVVHVDPPAEHKAYLHRSGRTARAGAAGSVITLVLPEQKHDVQVL 379

Query: 361 EKLIEKKVD 369
            K    + D
Sbjct: 380 LKKARIRAD 388


>gi|198476381|ref|XP_001357350.2| GA17489 [Drosophila pseudoobscura pseudoobscura]
 gi|198137669|gb|EAL34419.2| GA17489 [Drosophila pseudoobscura pseudoobscura]
          Length = 578

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 122/350 (34%), Positives = 194/350 (55%), Gaps = 8/350 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L   +   V  +GY   TPIQ   IP++    D+   AQTG+GKTA+F++P+L +
Sbjct: 164 FEDAKLRDIIAANVTKSGYKLATPIQKVAIPVIAAGRDLMACAQTGSGKTAAFLVPILNL 223

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L      + +  P+ +I+ PTRELA Q+     K+     L +++L GG   + QN+ + 
Sbjct: 224 LLTDAVDLEIGKPQAVIVSPTRELAIQIYHEARKFSHESYLKISILYGGTSVKYQNESIM 283

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TR 178
            G  +LI TPGR+LD   R  +  ++   LV+DEADRMLDMGF   ++ I +        
Sbjct: 284 MGCHLLIATPGRLLDFVERAFITFDDTRFLVMDEADRMLDMGFSESMRKIVTHCTMRAQH 343

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT   E+Q+++  FL N   + +         ++   +    +Y+K+  L+  L
Sbjct: 344 QTLMFSATFPQEIQRMAGEFLNNYIFVTIGVVGGACSDVKQT-IYEVTKYNKRRKLIDIL 402

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +S D     I+F   K+    L   L +      +IHG+  Q  R + L +FK G +++
Sbjct: 403 KESADGT---IVFVETKRGADFLASYLSEAEHPTTSIHGDRLQSQREQALRDFKTGKMKV 459

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           ++A+ +A+RGLDI +V HV N+D+P   ++Y+HRIGRTGR G +G+A + 
Sbjct: 460 LIATSVASRGLDIKNVKHVVNYDMPKTIDDYVHRIGRTGRVGNNGRATSF 509


>gi|126274138|ref|XP_001387431.1| RNA helicase involved in maturation of 18S rRNA [Scheffersomyces
           stipitis CBS 6054]
 gi|146286171|sp|A3GFV3|FAL1_PICST RecName: Full=ATP-dependent RNA helicase FAL1
 gi|126213301|gb|EAZ63408.1| RNA helicase involved in maturation of 18S rRNA [Pichia stipitis
           CBS 6054]
          Length = 399

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 124/369 (33%), Positives = 200/369 (54%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P ++  +   G+  P+ IQ + I  ++   D    AQ+GTGKTA+F + ML  
Sbjct: 28  FESMNLKPDLLKGIYGYGFEAPSAIQSRAIMQIINGRDTIAQAQSGTGKTATFSIGMLQA 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++      +  + LIL PTRELA Q+ +  +  G   N+     IGG       KKL++G
Sbjct: 88  ID---TNAKDCQALILSPTRELAVQIQNVVKHLGDYMNIHTHACIGGTHVGDDIKKLKQG 144

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR++D   R +L   NI++L++DEAD +   GF   I  +   +P + Q ++
Sbjct: 145 QQIVSGTPGRVVDMVKRQQLSTRNIKMLILDEADELFTKGFKEQIYEVYKYLPPSVQVVV 204

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT++ E+ +++  F  +P +I V     T E I+   V    +   +   C L   L 
Sbjct: 205 VSATLSREVLEMTNKFTTDPVKILVKRDQITLEGIKQYHVQCEKEDWKFDTLCDLYDNL- 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K  V  L   + KQ F+V ++HG++ Q  R  I+++F+ G  +++
Sbjct: 264 ----TITQAVIFCNTKLKVNWLTDQMRKQNFTVVSMHGDMKQDERDSIMNDFRTGNSRVL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A  L+ KED+  +  
Sbjct: 320 ISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGVAINLITKEDVATLRD 379

Query: 360 IEKLIEKKV 368
            EK    K+
Sbjct: 380 FEKYYSTKI 388


>gi|115456345|ref|NP_001051773.1| Os03g0827700 [Oryza sativa Japonica Group]
 gi|113550244|dbj|BAF13687.1| Os03g0827700 [Oryza sativa Japonica Group]
          Length = 723

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 211/379 (55%), Gaps = 12/379 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +  A LGL  ++V  +   G     PIQ   +   L   D+   A+TGTGKT +F +PM+
Sbjct: 69  LAIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMI 128

Query: 61  TIL---EKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L   + GR+  R R+PR L+L PTRELA QV    ++      L+   + GG+ +  Q
Sbjct: 129 KQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPK--LSTVCVYGGVSYNVQ 186

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG DV++ TPGRI+D  N G L +  ++ LV+DEAD+ML +GF   ++ I   +P
Sbjct: 187 QNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLP 246

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCA 233
             RQ++LFSATM   ++K+S  +L NP  I++  +     AE I+    A     + K  
Sbjct: 247 AERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIK--LYAIPLTSTSKRT 304

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +L  L+         I+F   K++   +  +L     +  A+HG+I Q  R + L+ F++
Sbjct: 305 VLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNS-IASEALHGDISQHQRERTLNGFRQ 363

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+D+AARGLDIP+V  + ++++PN  E ++HR GRTGRAG+ G A  +     
Sbjct: 364 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQ 423

Query: 354 IKHIDAIEKLIEKKVDWLN 372
            + + ++E+ +  + D+++
Sbjct: 424 RRTVRSLERDVGCRFDFIS 442


>gi|291383932|ref|XP_002708524.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Oryctolagus
           cuniculus]
          Length = 872

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 137/376 (36%), Positives = 212/376 (56%), Gaps = 20/376 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P+L  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 63  LEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     R++   T     LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +
Sbjct: 131 L----YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE 186

Query: 118 KLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++    ++L+CTPGR+L H +        N+++LV+DEADR+LDMGF   +  I   +P 
Sbjct: 187 RI-NNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPK 245

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCAL 234
            RQTLLFSAT T  ++ ++   L+NP+ + V+  +  ST  T+E  ++    Q  +K ++
Sbjct: 246 KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQ--QKISV 303

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL--EKQGFSVCAIHGNIDQRSRMKILSNFK 292
           L   L+S    K  I+F +  K V  L       + G S+ A+HG   Q  RM++ + F 
Sbjct: 304 LYSFLRSH-LKKKSIVFFSSCKEVQYLFRVFCRLRPGISILALHGRQQQMRRMEVYNEFV 362

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                ++ A+D+AARGLD P V  V  +D P  A  YIHR GRT R    G+A  ++   
Sbjct: 363 RKKAAVLFATDIAARGLDFPAVNWVLQYDCPEDANTYIHRAGRTARYKEDGEALLILLPS 422

Query: 353 DIKHIDAIEKLIEKKV 368
           + K +  +++L++KKV
Sbjct: 423 EEKGM--VQQLLQKKV 436


>gi|323341495|ref|ZP_08081736.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
 gi|323091106|gb|EFZ33737.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
          Length = 446

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 139/383 (36%), Positives = 210/383 (54%), Gaps = 21/383 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G  P +  A+ + G+ +PT +Q + IPL+L+R  V G +QTG+GKT +F+LP+   
Sbjct: 5   FAQFGFKPFIDAALKEIGFKEPTEVQARLIPLILKRRSVVGQSQTGSGKTHTFLLPIFQT 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKLE 120
           ++     V+    +I  P+RELA Q+ D  ++  K+    + V   +GG   + Q +KLE
Sbjct: 65  IDPELTEVQ---AVITTPSRELAYQIYDAAKQIAKHSEKEILVHNYVGGTDKQRQIEKLE 121

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R   ++I TPGR+LD      L ++N  +LV+DEAD  LD+GF+     I S +P   Q
Sbjct: 122 HRQPQIVIGTPGRVLDLMKSQALDVHNASVLVVDEADMTLDLGFLKETDAIASAMPKELQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++FSAT+ D+L+     ++ +P    V   +  + TI++  ++T  +   +  L+ QLL
Sbjct: 182 MMVFSATIPDKLKPFLRKYMTDPIVEVVENKNVISPTIDNWLISTKGR--DRNQLIYQLL 239

Query: 240 QSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               TM      ++F N K+ V +L   L  QG  V  IHG I  R R + +   +    
Sbjct: 240 ----TMGQPYLALVFANTKERVDDLTRYLRSQGLRVAKIHGGIPPRERKRTMREIQNMEY 295

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VA+DLAARG+DI  V  V N D+P   E +IHR+GRTGR G  G A TL A  + K 
Sbjct: 296 QFVVATDLAARGIDIEGVSQVINDDIPEDLEFFIHRVGRTGRNGMEGTAITLYAPSEDKM 355

Query: 357 IDAIEKL----IEKKVDWLNGDL 375
           I  +E L     EKK+   NG+L
Sbjct: 356 IAELENLGISFEEKKLS--NGEL 376


>gi|328353170|emb|CCA39568.1| eukaryotic initiation factor 4A [Pichia pastoris CBS 7435]
          Length = 486

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 138/377 (36%), Positives = 209/377 (55%), Gaps = 7/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L  +++ AV   GY  P+ IQ + I  ++   DV   AQ+GTGKTA+F +  L  
Sbjct: 107 FDELNLKEQILRAVFAYGYEFPSAIQSRAILPIVAGRDVLAQAQSGTGKTATFAISALQR 166

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++   +++  + LIL PTRELA Q+       G + N++V   IGG+      K    G
Sbjct: 167 LDE---KLKAAQVLILAPTRELALQIKKVVLALGMHLNISVHACIGGVDPALDVKAFNSG 223

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ D   RG     N++++++DEAD ML  GF   I  + +L+P T Q +L
Sbjct: 224 VQIVVGTPGRVQDMIERGAFRTENVKMVILDEADEMLSTGFKEQIYTLFTLLPSTTQVVL 283

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQLLQS 241
            SATM  E+ +V+  F+ NP RI V     T E I+  +V     QY   C  L  L  S
Sbjct: 284 LSATMPQEVLEVTTKFMNNPIRILVKKDQLTLEGIKQFYVDVGEEQYKFDC--LCDLYDS 341

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   L  Q F+V AIH  + Q  R  I+  F+ G+ +++++
Sbjct: 342 I-SVTQAVIFCNTRRKVEELTERLTAQKFTVSAIHSELSQTERDTIMQEFRTGSSRILIS 400

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 401 TDLLARGIDVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGVAINFVTSKDVEMMKEIE 460

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    ++D L   ++ L
Sbjct: 461 KFYSTQIDELPSSITDL 477


>gi|91206662|sp|Q4WEB4|FAL1_ASPFU RecName: Full=ATP-dependent RNA helicase fal1
          Length = 398

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 200/370 (54%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L +
Sbjct: 26  FEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSIGILQV 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 86  ID---TVVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYG 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 143 QHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVV 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P R+ V     T E I+  F+A   +   +   C L   L 
Sbjct: 203 VSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTL- 261

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++
Sbjct: 262 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVL 317

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  
Sbjct: 318 ISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRD 377

Query: 360 IEKLIEKKVD 369
           IE     ++D
Sbjct: 378 IELYYSTQID 387


>gi|284992766|ref|YP_003411320.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus
           obscurus DSM 43160]
 gi|284066011|gb|ADB76949.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus
           DSM 43160]
          Length = 508

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 188/353 (53%), Gaps = 6/353 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL  ++V A+   G   P  IQ   +P  L   DV G A TG+GKT +F LPML  
Sbjct: 29  FAQLGLPQQLVTALERRGIRHPFAIQASALPDALAGRDVLGKAATGSGKTLAFGLPMLAR 88

Query: 63  L-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L E  R   R PR L+L PTRELA QV DN    G++  + +  + GG     Q ++L R
Sbjct: 89  LGETARRGPRAPRALVLVPTRELAQQVFDNLAPLGQSIGVQLTTVYGGASMYRQIQQLRR 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D +I TPGR+ D  ++G++ ++ + + VIDEAD M D+GF+P +Q +        Q L
Sbjct: 149 GVDAVIATPGRLQDLISQGEVTLDEVSVTVIDEADFMSDLGFLPVVQELLDQTRPDAQRL 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  E+  +   +L++P R EV      A   EH  +A    +  K  + +QL   
Sbjct: 209 LFSATLDGEVDTLVRRYLKDPARHEVKRAGDDAPPAEH--LAYSLAFRDKVPVTEQLAAR 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  +IF   +     L  +L+  G    AIHG + Q +R + L  F +    ++VA
Sbjct: 267 PGRT---LIFVRTQLGADRLAGNLQAAGIKAEAIHGGLPQGARRRALEEFTDARSPVLVA 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           +D+AARG+ + DV  V ++D P   + Y+HR GRT RAG  G   +L+  + +
Sbjct: 324 TDVAARGIHVDDVSLVLHYDPPADHKTYLHRSGRTARAGAGGVVVSLLLPDQV 376


>gi|254818841|ref|ZP_05223842.1| ATP-dependent RNA helicase [Mycobacterium intracellulare ATCC
           13950]
          Length = 454

 Score =  223 bits (567), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 127/353 (35%), Positives = 190/353 (53%), Gaps = 10/353 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   +V A+   G   P PIQ++T+P  L   DV G  +TG+GKT +F +P+++ 
Sbjct: 7   FADLGVGKHIVSALAARGITHPFPIQVETLPDTLAGRDVLGRGKTGSGKTLAFSIPLVSR 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +G  R   P  L+L PTRELA Q+    E       L V  + GG+    Q   L+ G
Sbjct: 67  LSRGNRRPARPSGLVLAPTRELATQITATLEPLAAACGLRVTTIFGGVSQTRQVAALKSG 126

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++  PGR+ D   +  + ++ IEI VIDEAD M D+GF+P +  I +  P   Q LL
Sbjct: 127 VDIVVACPGRLEDLMKQRLISLDAIEITVIDEADHMADLGFLPGVTRILAATPNGGQRLL 186

Query: 183 FSATMTDELQKVSENFLQNP---KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           FSAT+ + + K+   FL++       E N+P S  E   H F    AQ  K+  L+ +L 
Sbjct: 187 FSATLDNGVDKLVTRFLRDAVSHSVDEANSPVS--EMTHHVFHVDSAQAKKE--LVHRLA 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    I+F   K     L   L + G     +HGN+ Q +R + L+ F  G+ +++
Sbjct: 243 SGAGRR---ILFMRTKHQARKLAKQLTESGIPSVDLHGNLSQPARERNLARFAAGSARVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           VA+D+AARG+ + +V  V + D P+  ++Y+HR GRT RAG  G   T+V  E
Sbjct: 300 VATDIAARGVHVDEVELVVHIDPPSEHKSYLHRSGRTARAGSAGDVVTVVLPE 352


>gi|67521618|ref|XP_658870.1| hypothetical protein AN1266.2 [Aspergillus nidulans FGSC A4]
 gi|74657573|sp|Q5BDW4|PRP5_EMENI RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|40746703|gb|EAA65859.1| hypothetical protein AN1266.2 [Aspergillus nidulans FGSC A4]
 gi|259488412|tpe|CBF87827.1| TPA: Pre-mRNA-processing ATP-dependent RNA helicase prp5 (EC
           3.6.1.-) [Source:UniProtKB/Swiss-Prot;Acc:Q5BDW4]
           [Aspergillus nidulans FGSC A4]
          Length = 1173

 Score =  223 bits (567), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 131/373 (35%), Positives = 207/373 (55%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  + +  +   G+   T IQ + IP ++   DV G+A+TG+GKT +F++PM   
Sbjct: 543 WSQCGLGIQTLDVIDKLGFASLTSIQAQAIPAIMSGRDVIGVAKTGSGKTMAFLIPMFRH 602

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++  R    M  P  LI+ PTRELA Q+  + + + K  NL      GG P + Q  +L+
Sbjct: 603 IKDQRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELK 662

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I S V   
Sbjct: 663 RGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILSNVRPD 722

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT    ++ ++   L  P  I V   S  A  I    V    +  K   LL+ 
Sbjct: 723 RQTVLFSATFPRNMEALARKTLTKPIEIVVGGRSVVAPEITQ-IVEVCNEEKKFVRLLEL 781

Query: 238 L--LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L  L S D  ++   +IF ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 782 LGNLYSTDENEDARSLIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKA 841

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 842 GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 901

Query: 354 IKHIDAIEKLIEK 366
            ++   I K +++
Sbjct: 902 ERYSVDIAKALKQ 914


>gi|330798075|ref|XP_003287081.1| hypothetical protein DICPUDRAFT_151154 [Dictyostelium purpureum]
 gi|325082917|gb|EGC36384.1| hypothetical protein DICPUDRAFT_151154 [Dictyostelium purpureum]
          Length = 565

 Score =  223 bits (567), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 122/351 (34%), Positives = 207/351 (58%), Gaps = 6/351 (1%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGR-ARVRMPRTLIL 78
           + +PTP+Q    P+ L   D+  +++TG+GKT SF+LP +  ILE+ R +    P  L++
Sbjct: 148 FEEPTPVQSLGWPIALSGRDLLAVSKTGSGKTLSFILPAIQHILEQPRQSAYHGPNVLVV 207

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA Q+A+   ++     +  ALL GG P  +Q  ++     ++I TPGRILD ++
Sbjct: 208 APTRELACQIAEESREFLIANRINKALLYGGEPKSSQAYQIRNQPKIIIGTPGRILDFYD 267

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
            G L + N+  +VIDEADR+L+MGF   ++ + S +   RQ L +SAT   ++ ++++ +
Sbjct: 268 SGSLQLKNVSYMVIDEADRLLEMGFGEDMEKLFSSIRPDRQVLYWSATWPKKVSQLADKY 327

Query: 199 LQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG--IIFCNQK 255
           +++P  +++ + + +A + I   F     +  K   LL+ L Q  +  +N   +IF   K
Sbjct: 328 IKDPIHLQIGSSALSANKNITQNFSIVEREADKVEKLLETLEQIYNNNENARTLIFTMTK 387

Query: 256 KNVVNLCHSLEKQG-FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K    L   L K G   +  +HG+  Q++R  I++ FKEG + +++A+D+A+RGLDI  +
Sbjct: 388 KGAETLSDFLGKNGDVRIGCLHGDKPQQTRSNIVNRFKEGKLDMVIATDIASRGLDIKHI 447

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
             V NF +P   E Y+HRIGRT RAG  G + +++++E I  ++ I  LI+
Sbjct: 448 TDVINFSLPPNCETYVHRIGRTARAGASGTSHSILSRESINDVELIGDLID 498


>gi|303290931|ref|XP_003064752.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226453778|gb|EEH51086.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 421

 Score =  223 bits (567), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 137/377 (36%), Positives = 202/377 (53%), Gaps = 47/377 (12%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKG 66
           + P V+ A   + + +P+PIQ ++ P+VL   D+ GIA TG+GKT +F LP LT IL + 
Sbjct: 5   VPPNVLAAT--SAFQRPSPIQAQSWPIVLSGRDMVGIAATGSGKTLAFGLPALTQILSQA 62

Query: 67  RARVRM------------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           R+R R+            P  L+L PTRELA Q A  F++ GK+ N+    + GG P   
Sbjct: 63  RSRFRLRSPTTPPAKPGQPICLVLAPTRELAQQTARVFDEAGKSCNVRCVCVYGGAPKWE 122

Query: 115 QNKKLER-------------GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
           Q K+                G  V++ TPGR+ D  N G + ++ +  LV+DEADRMLD+
Sbjct: 123 QKKQARSIHWSPYDPMREGGGCAVVVATPGRLRDFMNDGDVKLDRVTTLVLDEADRMLDL 182

Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS-----STAET 216
           GF P I+ I       RQT++FSAT    +Q     F+++P ++ +         S  + 
Sbjct: 183 GFEPEIREIAGATRADRQTVMFSATWPMSIQGA---FMRDPVKVRIGAEGLKASHSITQI 239

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
           +E   V    + S    LL++    Q      +IF   KK         E+Q ++   IH
Sbjct: 240 VE--VVEPNDKDSHLTRLLKKYCGGQTPTPRTLIFALYKK---------ERQNWACVPIH 288

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G++ QR R + ++ FK+G+  L+VA+D+AARGLDI  V +V N+  P   E+Y+HRIGRT
Sbjct: 289 GDMTQRDREESVAAFKDGSKPLLVATDVAARGLDIKGVEYVINYTFPLTTEDYVHRIGRT 348

Query: 337 GRAGRHGKAFTLVAKED 353
           GRAG+ G A TL    D
Sbjct: 349 GRAGKTGIAHTLFTVHD 365


>gi|330719991|gb|EGG98438.1| ATP-dependent RNA helicase SrmB [gamma proteobacterium IMCC2047]
          Length = 448

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 128/363 (35%), Positives = 204/363 (56%), Gaps = 3/363 (0%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L+ +++ A+   G+ +PTP+Q ++IP  L   D+   A+TG+GKTA+F+LP+L  L    
Sbjct: 11  LNERLIKALEKQGFEQPTPVQEQSIPAALAGKDLLVSAETGSGKTAAFLLPILNKLLAND 70

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
           A     R L+L PTRELA QV  N E      +L   L+IG   F+ Q     +  ++LI
Sbjct: 71  APNTGTRALVLVPTRELARQVLKNCEALASFSHLKAGLIIGRENFQIQKALFRKNPEILI 130

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+++H ++      ++E+LV+DEADRMLDMGF   +  IT      RQTLL+SAT+
Sbjct: 131 ATPGRLVEHLDQNTPDFKDLEVLVLDEADRMLDMGFGEDVLKITHACNKERQTLLYSATL 190

Query: 188 TDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + L+ + E  L +P+++ +N+     ++I    +       K+  LL   L +++  +
Sbjct: 191 NQKGLKPMIEKVLTDPQKLLLNSVRDQHQSIRQQIILADDTGHKERLLLA--LLTREKYE 248

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             +IF N +     L   L K       +HG ++Q  R +++   + G I  +VASD+AA
Sbjct: 249 KALIFTNTRAKADVLGEMLFKSEVRSGVLHGEMEQEHRNRVVERLRTGHISALVASDVAA 308

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NFD+    ++Y+HRIGRTGRAG  G A +L+   +   +  IE+ + +
Sbjct: 309 RGLDIKGIDLVINFDMARSGDDYLHRIGRTGRAGETGLAVSLIIDPEWNLMAGIERYLGQ 368

Query: 367 KVD 369
           K +
Sbjct: 369 KFE 371


>gi|304410338|ref|ZP_07391957.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307301951|ref|ZP_07581709.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304351747|gb|EFM16146.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306913989|gb|EFN44410.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 443

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 151/431 (35%), Positives = 229/431 (53%), Gaps = 20/431 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF----- 55
           + FA+LG++  ++ A L A  V PT +Q   IP +L   D+  +AQTG+GKT +F     
Sbjct: 13  LTFAELGINSALLKA-LPAKLVHPTKVQQLAIPAILAGRDLLALAQTGSGKTLAFGLPLL 71

Query: 56  VLPMLTILEKGRARVRMPRT----LILEPTRELAAQVADNFEKYGK--NYNLTVALLIGG 109
              +L    + +    +P +    L+L PTRELA QV +  +      + +L + LL GG
Sbjct: 72  QQLLLQQQTQLQGTKSVPPSNALALVLVPTRELALQVTEALQAVASQLSASLNIQLLCGG 131

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +P E Q  +L     VL+ TPGR+LD   +  + +++I+ LV+DEADR+L+MGF P +Q 
Sbjct: 132 VPLEDQLVELAAKPQVLVATPGRLLDLCKQSHISLDSIKHLVLDEADRLLEMGFWPDVQK 191

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQN-PKRIEVNTPSSTAETIEHCFVATYAQY 228
           + + +P  +QTLLFSAT+ + L  ++E  L N P R+E +  +S A  IE        + 
Sbjct: 192 LMAFMPKLKQTLLFSATLPEALDTLTEKLLVNEPLRVEAHKVNSVAGEIEEQLYLVN-KG 250

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           SK   L+  L Q Q      ++F + + +   +   L K G  V A+HG  DQ  R + L
Sbjct: 251 SKAQVLIALLKQYQ--WPQVLVFISARDDADAVAKRLAKAGMKVAALHGEKDQTVRSQTL 308

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           ++FK   IQ++VA+DL ARG+ +  +  V N D+P  A  Y+HRIGRT RAG  G A +L
Sbjct: 309 ADFKANRIQVLVATDLMARGIHVDALPVVINLDLPMSAPVYVHRIGRTARAGEKGLAISL 368

Query: 349 VAKEDIKHIDAIEKLIEKKVDW-LNGDLSSLNPPLEKI-DIAQHNHARKNNPIPQKSTGF 406
           V   ++  + AI  L  +K+   L  D    + P E   D A  +   +  P   K    
Sbjct: 369 VCHGEMATLTAIRSLTARKLPLALLADFPVTDKPSENTSDGAAESKVERKRPPRDKQA-- 426

Query: 407 DRRKKNYSSQK 417
           +RR  N  S K
Sbjct: 427 NRRSINKHSAK 437


>gi|282863805|ref|ZP_06272863.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
 gi|282561506|gb|EFB67050.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
          Length = 492

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 124/350 (35%), Positives = 190/350 (54%), Gaps = 5/350 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 65  FADLGLPEPLLAALGAEGMSVPFPIQAATLPNTLVGRDVLGRGRTGSGKTLAFGLALLAR 124

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y ++  L +A ++GG+    Q   L  G
Sbjct: 125 TAGRRAEPRQPLALVLVPTRELAQQVTDALTPYARSVRLRLAAVVGGMSIGRQASALRGG 184

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           +++++ TPGR+ D  +RG   ++ ++I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 185 SEIVVATPGRLKDLIDRGDCRLDQVDITVLDEADQMADMGFMPQVTALLDQVSPGGQRML 244

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  S+T  T+EH  +  +   + K A   ++   +
Sbjct: 245 FSATLDRNVDLLVRRYLTDPVVHSVDPSSATVTTMEHHVL--HVHGADKQATTTEIAARE 302

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F + K  V  L   L   G    A+HG   Q  R + L+ FK G + ++VA+
Sbjct: 303 GRV---IMFLDTKHAVDRLTRDLLNSGVRAAALHGGKSQPQRTRTLAQFKSGHVTVLVAT 359

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           ++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV  +
Sbjct: 360 NVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPD 409


>gi|143455890|sp|Q0DM51|RH3_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
           Flags: Precursor
 gi|18855061|gb|AAL79753.1|AC096687_17 putative RNA helicase [Oryza sativa Japonica Group]
          Length = 758

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 211/379 (55%), Gaps = 12/379 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +  A LGL  ++V  +   G     PIQ   +   L   D+   A+TGTGKT +F +PM+
Sbjct: 104 LAIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMI 163

Query: 61  TIL---EKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L   + GR+  R R+PR L+L PTRELA QV    ++      L+   + GG+ +  Q
Sbjct: 164 KQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPK--LSTVCVYGGVSYNVQ 221

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG DV++ TPGRI+D  N G L +  ++ LV+DEAD+ML +GF   ++ I   +P
Sbjct: 222 QNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLP 281

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCA 233
             RQ++LFSATM   ++K+S  +L NP  I++  +     AE I+    A     + K  
Sbjct: 282 AERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIK--LYAIPLTSTSKRT 339

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +L  L+         I+F   K++   +  +L     +  A+HG+I Q  R + L+ F++
Sbjct: 340 VLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNS-IASEALHGDISQHQRERTLNGFRQ 398

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+D+AARGLDIP+V  + ++++PN  E ++HR GRTGRAG+ G A  +     
Sbjct: 399 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQ 458

Query: 354 IKHIDAIEKLIEKKVDWLN 372
            + + ++E+ +  + D+++
Sbjct: 459 RRTVRSLERDVGCRFDFIS 477


>gi|224002607|ref|XP_002290975.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972751|gb|EED91082.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 681

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 133/362 (36%), Positives = 199/362 (54%), Gaps = 15/362 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + GLS ++   +     V P P+Q + +P ++   DV GIA+TG+GKT +FVLPML  
Sbjct: 62  FREAGLSERINAVLESKNMVNPFPVQAQCLPCIMAGRDVIGIAKTGSGKTLAFVLPMLRH 121

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           IL++     G      P  LIL P RELA Q+    + + K+  L    + GG     Q 
Sbjct: 122 ILDQPPLAPGET---GPIGLILAPARELAYQIHVVCKGFTKHLGLKSTAVYGGAGVAEQI 178

Query: 117 KKLERGADVLICTPGRILD--HFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
             L+RG  +L  TPGR++D      GKL+ +  + ++ +DEADR  DMGF   I  I S 
Sbjct: 179 GDLKRGTHILCATPGRLIDILTMQSGKLISLQRVSMVCLDEADRAFDMGFESQISAILSA 238

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           V   RQT+LFSAT    ++++++  L+ P  I V   S  +++++  +     +  K   
Sbjct: 239 VRPDRQTVLFSATFPKAVEQLAKKSLRAPLEIIVGGRSVASDSVDQ-YAEVVEEEDKFLR 297

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK- 292
           LLQ L    D  K  I+F  +++   +L   L + G+S  +IHG +DQ  R   +S+FK 
Sbjct: 298 LLQILGDHADDQKKVIVFVGRQEQADSLFEQLTRCGYSSLSIHGGMDQEDRDSNMSDFKR 357

Query: 293 -EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
            +  + ++VA+ +A RGLD+P  G V N+  PN  E+Y+HR+GRTGRAG  G AFT V  
Sbjct: 358 VDSGVNVLVATSVAGRGLDVPSCGCVVNYASPNHLEDYVHRVGRTGRAGNRGVAFTFVNS 417

Query: 352 ED 353
            D
Sbjct: 418 TD 419


>gi|157820683|ref|NP_001101516.1| probable ATP-dependent RNA helicase DDX41 [Rattus norvegicus]
 gi|149039854|gb|EDL93970.1| rCG24134 [Rattus norvegicus]
 gi|187469705|gb|AAI66825.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Rattus norvegicus]
          Length = 622

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 132/361 (36%), Positives = 199/361 (55%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L   ++  +   G + PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 183 FKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 242

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 243 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMS 302

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 303 VKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 362

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + +N   + A +++   V    +Y K+
Sbjct: 363 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKE 417

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 K 351
           K
Sbjct: 538 K 538


>gi|294632189|ref|ZP_06710749.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
 gi|292835522|gb|EFF93871.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
          Length = 473

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 125/350 (35%), Positives = 190/350 (54%), Gaps = 5/350 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA L L  +V+  + D G  +P PIQ  T+P  L+  DV G  +TG+GKT +F LP+L
Sbjct: 28  VSFAGLELPVEVLRTLSDLGVREPFPIQAATLPDALKGRDVLGRGRTGSGKTLAFGLPLL 87

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T     RA  + P  LIL PTRELA QVA     Y +   L +A ++GG     Q   L 
Sbjct: 88  TRTAGRRAEPKQPLALILVPTRELAQQVAQALAPYAEALRLRMATVVGGTSIGRQVAALR 147

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA+V++ TPGR+ D   R    +  + I V+DEAD+M D+GF+P + ++   V    Q 
Sbjct: 148 QGAEVVVATPGRLHDLIERNACRLGRVGITVLDEADQMCDLGFLPQVADVLDQVHPDGQR 207

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+  ++ ++   +L +P    V+  + T  T+EH  +  +     + A++ ++  
Sbjct: 208 MLFSATLDRDVDQLVRRYLHDPVVHSVDPSTGTVTTMEHHVLVVH--DPDRYAVITEIAA 265

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   ++F + K  V  L   L   G    A+H    Q  R + L+ FK G I ++V
Sbjct: 266 RDGRV---LLFLDTKHAVDQLTRHLRASGVHAGALHSGKSQPQRTRTLAQFKNGQITVLV 322

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           A+D+AARGL + D+  V N D P   ++Y+HR GRT RAG  G   TLV+
Sbjct: 323 ATDVAARGLHVDDLDLVVNVDPPTDPKDYVHRAGRTARAGESGSVVTLVS 372


>gi|27545287|ref|NP_775375.1| ATP-dependent RNA helicase DDX54 [Danio rerio]
 gi|20977591|gb|AAM28223.1| ATP-dependent RNA helicase [Danio rerio]
          Length = 862

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 125/356 (35%), Positives = 202/356 (56%), Gaps = 4/356 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA+F++P+   
Sbjct: 80  FQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPLFEK 139

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  +A+    R LIL PTRELA Q     ++ GK   L  AL++GG   + Q   L   
Sbjct: 140 LKAPQAQT-GARALILTPTRELALQTMKFTKELGKFTGLRTALILGGDSMDDQFAALHEN 198

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I   +P  RQTLL
Sbjct: 199 PDIIIGTPGRLMHVIQEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIRRLPDARQTLL 258

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS- 241
           FSAT+   + + +   L  P  I ++  +  +E ++  F +   +   K ALL  LL++ 
Sbjct: 259 FSATLPKLIVEFARAGLTEPVLIRLDVDTKLSEQLKLSFFSL--RLDDKPALLLHLLRNV 316

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  ++F   K +V  L   L  +G     I+  +DQ +R   +  F    + L++ 
Sbjct: 317 VKPQEQTVVFVATKHHVEYLKELLSAEGVDCSCIYSALDQTARKISIGRFVHRKVMLLLV 376

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +D+AARG+DIP + +V N++ P + + ++HR+GR  RAGR G A++LV  +++ ++
Sbjct: 377 TDVAARGIDIPLLDNVINYNFPCKPKLFLHRVGRVARAGRGGTAYSLVCPDEVPYL 432


>gi|170757010|ref|YP_001781328.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum B1 str.
           Okra]
 gi|169122222|gb|ACA46058.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum B1 str. Okra]
          Length = 421

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 114/362 (31%), Positives = 209/362 (57%), Gaps = 8/362 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L+PK+V  +       PT IQ K IPL ++  D+ G ++TGTGKT +++LP   I
Sbjct: 5   FDTLNLNPKLVQGLKKLNINIPTEIQAKAIPLAMENKDIIGQSETGTGKTLAYLLP---I 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA--LLIGGIPFEAQNKKLE 120
           LEK     R  + +IL PT ELA Q+ +  +    N N+ V    +IG    + Q +KL+
Sbjct: 62  LEKITTEKREMQAIILAPTHELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ +PGRIL+   + K+  + ++ +VIDE D++LD   +  ++ +       RQ 
Sbjct: 122 EKPHIIVGSPGRILELIKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQL 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+T+    ++++ +++ + ++V   ++  E I+H ++    ++ ++  +L++L+ 
Sbjct: 182 MLFSATITESTLNIAKDLMKDSEVVKVKEKNTVNENIKHLYIT--GEHRERIEILRKLIA 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +  K  I+F N+ + +      L+        I+G  ++  R K L +F+ G +Q++V
Sbjct: 240 ATNP-KRAIVFINRNEEIELTTLKLQYHKIKAYGIYGAAEKEQRKKALEDFRSGKVQILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +SDL+ARGLD+ D+ H+FN D+P   + Y+HR+GRTGRA + G A +++ +++   I   
Sbjct: 299 SSDLSARGLDVKDITHIFNLDLPENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRKY 358

Query: 361 EK 362
           EK
Sbjct: 359 EK 360


>gi|149631935|ref|XP_001509692.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 859

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 136/374 (36%), Positives = 213/374 (56%), Gaps = 12/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P+L
Sbjct: 66  LRFSDFPLSKKTLKGLQEAQYRMVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 125

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L + +   +     LI+ PTRELA Q  +   K GKN+  +  L+IGG   + +++++
Sbjct: 126 ESLYRQQWTSMDGLGVLIISPTRELAYQTFEVLRKVGKNHEFSAGLIIGGKDLKQESERI 185

Query: 120 ERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +  ++LICTPGR+L H +       +N+++LV+DEADR+LDMGF   +  I   +P  R
Sbjct: 186 NQ-INILICTPGRLLQHMDETTYFHASNLQMLVLDEADRILDMGFADTMNAIIENLPRKR 244

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQ 236
           QTLLFSAT T  ++ ++   L++P+ + V+  +  ST  T+E  ++    Q  +K  +L 
Sbjct: 245 QTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLEQNYIVCELQ--QKINMLY 302

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSL--EKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             L+S    K  I+F +  K V  L       + G S+ A+HG   Q  RM++ ++F   
Sbjct: 303 SFLRSH-LKKKSIVFFSSCKEVQYLFRVFCRLRPGLSILALHGKQQQMKRMEVYNDFVRK 361

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++ A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   + 
Sbjct: 362 KSAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEGGEALLVLLPSEE 421

Query: 355 KHIDAIEKLIEKKV 368
           K +  +++L +KKV
Sbjct: 422 KGM--VQQLTQKKV 433


>gi|303319503|ref|XP_003069751.1| Eukaryotic translation initiation factor, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|142985565|sp|Q1DTB3|FAL1_COCIM RecName: Full=ATP-dependent RNA helicase FAL1
 gi|240109437|gb|EER27606.1| Eukaryotic translation initiation factor, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|320040787|gb|EFW22720.1| ATP-dependent RNA helicase FAL1 [Coccidioides posadasii str.
           Silveira]
          Length = 399

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 121/379 (31%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   G+  P+ IQ + I  + +  D    AQ+GTGKTA+F + +L +
Sbjct: 27  FDDMHLKENLLRGIYAYGFESPSAIQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQV 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     +R  + L+L PTRELA Q+ +     G   N+     IGG       +KL+ G
Sbjct: 87  IDTA---LRETQALVLSPTRELATQIQNVIMAVGDYMNVQCHACIGGTNVGDDIRKLDHG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++LV+DEAD +L  GF   I ++   +P   Q ++
Sbjct: 144 QHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADDLLARGFREQIYDVYRYLPPATQVVV 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 204 LSATLPYDVLSMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTL- 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++
Sbjct: 263 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 319 ISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRD 378

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 379 IELYYSTQIDEMPMNVADL 397


>gi|303325606|ref|ZP_07356049.1| ATP-dependent RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
 gi|302863522|gb|EFL86453.1| ATP-dependent RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
          Length = 541

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 122/348 (35%), Positives = 192/348 (55%), Gaps = 9/348 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
            ADL  +    CA   AG+    P+Q   +P +L+  D+   ++TG+GKT  ++LPML  
Sbjct: 46  LADLPEAMHAACA--RAGWQSLMPVQSLALPYLLEGRDIMVQSRTGSGKTGCYLLPMLPR 103

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     ++ P+ L+L PTRELA QV         +  +    + GG+ ++ Q   L  G
Sbjct: 104 LDP---ELKAPQALVLAPTRELAVQVEREAAVIFADTGIRTVAVYGGVGYKKQMDALREG 160

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR-QTL 181
           A V++ TPGR+LDH  R  L + ++ +LV DEADRML +GF P ++ +   +P  R  T 
Sbjct: 161 AQVIVGTPGRVLDHLLRRTLDLKDLRVLVFDEADRMLSIGFYPDMKEVQRYLPKKRIHTC 220

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    + K++  F+  P  + ++        ++H F         +   L +LL++
Sbjct: 221 LFSATYPPHVLKLAAEFMSEPALLSLSQKEVHVAEVQHLFCEVKPMDKDRA--LVRLLET 278

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++   + IIFCN K NV  +   L+  G+S   +  ++ Q  R  +L   ++G +Q +VA
Sbjct: 279 ENP-ASAIIFCNTKANVHYVTGVLQGFGYSADELSADLSQNRREAVLDKIRKGRLQYLVA 337

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +D+AARG+DIP + HVF ++ P   E+YIHR GRTGRAG  G   +LV
Sbjct: 338 TDVAARGIDIPALSHVFLYEPPEDHESYIHRAGRTGRAGAAGTVISLV 385


>gi|158292622|ref|XP_314012.3| AGAP005130-PA [Anopheles gambiae str. PEST]
 gi|157017078|gb|EAA09455.3| AGAP005130-PA [Anopheles gambiae str. PEST]
          Length = 531

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 140/420 (33%), Positives = 225/420 (53%), Gaps = 22/420 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGL+  +       G  +PTPIQ++ IP +LQ  D  G A+TG+GKT +F LP   I
Sbjct: 9   FSDLGLTYWITRQTEKLGLRRPTPIQVECIPRILQGQDCIGAAKTGSGKTFAFALP---I 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K          L+L PT ELA Q+A+ F   G+  N  V ++ GG  +  ++++LE+ 
Sbjct: 66  LQKLSEEPTANFALVLTPTHELAHQIAEQFIVAGQPMNARVCVVTGGTDYLIESQQLEKR 125

Query: 123 ADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++  PGR+ DH           ++ LV+DEADRML   F   +  I   +P  RQ L
Sbjct: 126 PHIIVAMPGRLADHLTGCNTYSFAALQFLVVDEADRMLCGSFDEDLMVINRFLPAKRQNL 185

Query: 182 LFSATMTDELQK-----VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            FSAT+ D L+      ++++  +  ++    +P +T ET++  ++   A Y +   +++
Sbjct: 186 FFSATLKDFLKTSIVFPIADDVFEWSEQ----SPVATVETLDQRYLLC-ADYDRDTVMVE 240

Query: 237 QLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            L + ++  ++   +IF N KK+   L  SL   GFS   +HG + QR R+  L+ FK  
Sbjct: 241 ALRKYKEDQEDASIMIFTNSKKDCQILSMSLNSFGFSNVCLHGFLRQRERVAALNKFKSK 300

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KED 353
            +++M+A+D+A+RGLDI DV  V N  +P +   YIHR+GRT RAGR G A +++    D
Sbjct: 301 HVRIMIATDVASRGLDIHDVQLVVNHRLPKKPIEYIHRVGRTARAGRAGMAISILRFPRD 360

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           ++ +  IE LI  K+   + D   +     ++ +     AR    I   +  FD RK  Y
Sbjct: 361 LEALGEIEALINTKLTEYSVDDRLVQRIFMQVKV-----ARAEAEINLDNKDFDERKHKY 415


>gi|258571293|ref|XP_002544450.1| eukaryotic initiation factor 4A-12 [Uncinocarpus reesii 1704]
 gi|237904720|gb|EEP79121.1| eukaryotic initiation factor 4A-12 [Uncinocarpus reesii 1704]
          Length = 399

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 121/379 (31%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   G+  P+ IQ + I  + +  D    AQ+GTGKTA+F + +L +
Sbjct: 27  FDDMHLKENLLRGIYAYGFESPSAIQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQV 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     +R  + L+L PTRELA Q+ +     G   N+     IGG       +KL+ G
Sbjct: 87  IDTA---LRETQALVLSPTRELATQIQNVIMAVGDYMNVQCHACIGGTNVGDDIRKLDHG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++LV+DEAD +L  GF   I ++   +P   Q ++
Sbjct: 144 QHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADDLLARGFRDQIYDVYRYLPPATQVVV 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 204 LSATLPYDVLSMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTL- 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++
Sbjct: 263 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 319 ISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRD 378

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  +++ L
Sbjct: 379 IELYYSTQIDEMPMNVADL 397


>gi|213510948|ref|NP_001133799.1| probable ATP-dependent RNA helicase DDX41 [Salmo salar]
 gi|209155372|gb|ACI33918.1| Probable ATP-dependent RNA helicase DDX41 [Salmo salar]
          Length = 615

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 133/361 (36%), Positives = 202/361 (55%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--ML 60
           F ++     ++  +   G V PTPIQI+ IP +L   D+ GIA TG+GKT  F LP  M 
Sbjct: 176 FREMKFPQAILKGLKKKGIVHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPIIMF 235

Query: 61  TILEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGK------NYNLTVALLIGGIP 111
           ++ ++ R    +   P  LI+ P+RELA Q     E Y K        ++   L IGG+ 
Sbjct: 236 SLEQEKRLPFCKSEGPYGLIICPSRELAKQTHTIIEYYCKLLEEEGAPHMRSVLCIGGMS 295

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + ++ G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 296 VKDQMEVVKHGVHMMVATPGRLMDLLQKKMISLDICRYLALDEADRMIDMGFEEDIRTIF 355

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  I +N   + A +++   V    +Y K+
Sbjct: 356 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--ITINVGRAGAASLD---VIQEVEYVKE 410

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    ++F  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 411 EAKMVYLLECLQKTPPPVLMFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 470

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FKEG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G+ G A T + 
Sbjct: 471 FKEGKKDVLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATTFIN 530

Query: 351 K 351
           K
Sbjct: 531 K 531


>gi|224090572|ref|XP_002187022.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Taeniopygia
           guttata]
          Length = 492

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 129/367 (35%), Positives = 203/367 (55%), Gaps = 12/367 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FAD  +   +   +  AGY KPTP+Q  +IP++L   D+   AQTG+GKTA+F++P++
Sbjct: 67  MSFADTNMCDTLTMNISKAGYWKPTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLVPVV 126

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                  +        + P  +I  PTREL  Q+     K+     +   ++ GG     
Sbjct: 127 AQMMRDGVTASAFKEQQEPECIITAPTRELIYQIFLEARKFVYGTCIRPVVIYGGTQTSY 186

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +++E+G ++L  TPGR+LD   RGK+ ++N++ LV+DEADRMLDMGF   ++ + S  
Sbjct: 187 LIRQVEQGCNILCATPGRLLDIIGRGKIGLHNVKYLVLDEADRMLDMGFGADMKKLVSFP 246

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL+      V   +  A +     +   +QY K
Sbjct: 247 GMPQKEKRQTLMFSATFPEEVQRLAYEFLKTDFIFVVVGCAGGACSDVQQNILQVSQYFK 306

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++ +L S    +  ++F + KK    +   L ++     +IHG+ +QR R   L +
Sbjct: 307 RDKLIE-ILHSTGNERT-LVFVDTKKKADFIACFLCQENIPATSIHGDREQREREIALGD 364

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  GKA     
Sbjct: 365 FRSGRRPVLVATSVAARGLDIENVQHVINFDLPSTIEEYVHRIGRTGRCGNTGKAVAFFD 424

Query: 351 KEDIKHI 357
           K    H+
Sbjct: 425 KYSDGHL 431


>gi|76781331|gb|ABA54551.1| vasa-like protein [Monopterus albus]
          Length = 618

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 130/359 (36%), Positives = 206/359 (57%), Gaps = 14/359 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTASF+LP+L
Sbjct: 192 MTFDEAELCETLRRNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTASFLLPIL 251

Query: 61  T-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G A      ++ P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 252 QQLMVDGVAASCFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGY 311

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q +++ +G +VL  TPGR+LD   RGK+ ++ +  LV+DEADRMLDMGF P ++ +    
Sbjct: 312 QIREILKGCNVLCGTPGRLLDMIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRRLVGSP 371

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYS 229
                   QTL+FSAT  +++Q+++ +FL+     + V         +E  FV    ++S
Sbjct: 372 GMPPKENHQTLMFSATFPEDIQRMAADFLKTDYLFLAVGEVGGACTDVEQTFVQV-TKFS 430

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  L++  L++  T +  ++F   K+    +   L ++     +IHG+ +Q  R K L+
Sbjct: 431 KRDQLVE-FLKTTGTERT-MVFAETKRQADFIALFLCQEKVPTTSIHGDREQPEREKALA 488

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +F+ G   ++VA+ +AARGLDIPDV HV NFD+PN  + Y+HRIGRTGR G  G+A + 
Sbjct: 489 DFRSGKCLVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNIGRAVSF 547


>gi|15922792|ref|NP_378461.1| ATP-dependent RNA helicase [Sulfolobus tokodaii str. 7]
 gi|160286327|pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
           Helicase From Sulfolobus Tokodaii
 gi|15623583|dbj|BAB67570.1| 337aa long hypothetical ATP-dependent RNA helicase deaD [Sulfolobus
           tokodaii str. 7]
          Length = 337

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 128/345 (37%), Positives = 205/345 (59%), Gaps = 22/345 (6%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           ++ K+  A+ + G+   T +Q KTIPL+LQ  +V   A+TG+GKTA++ +P   ILE G 
Sbjct: 1   MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIP---ILELGM 57

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
                 ++L++ PTREL  QVA +    G+  +  VA + GG+P++AQ  ++ R AD+++
Sbjct: 58  ------KSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV-RNADIVV 110

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+LD +++G + +++ EI++IDEAD M +MGFI  I+ I +     + T LFSAT+
Sbjct: 111 ATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATI 170

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
            +E++KV ++F+ N + IE     +    +EH FV     +  K   +Q L +++D  K 
Sbjct: 171 PEEIRKVVKDFITNYEEIEACIGLAN---VEHKFVHVKDDWRSK---VQALRENKD--KG 222

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            I+F   +  V  L    +    +   + G++ Q  R + +  F+EG   +++ +D+A+R
Sbjct: 223 VIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASR 278

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           GLDIP V  V NFD P     YIHRIGRTGR GR G+A T +  E
Sbjct: 279 GLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFILNE 323


>gi|254577069|ref|XP_002494521.1| ZYRO0A03476p [Zygosaccharomyces rouxii]
 gi|238937410|emb|CAR25588.1| ZYRO0A03476p [Zygosaccharomyces rouxii]
          Length = 399

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 127/383 (33%), Positives = 211/383 (55%), Gaps = 14/383 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+  P+ IQ + I  ++   DV   AQ+GTGKTA+F + ML +
Sbjct: 25  FEAMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGMLQV 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER- 121
           LE  R  ++    L+L PTRELA+Q        G   N+    L GG   +   K+++  
Sbjct: 85  LELKRKDLQ---ALVLSPTRELASQSCQVVSNLGDYLNVKAFALTGGKALKDDLKRIQSS 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD--MGFIPYIQNITSLVPFTRQ 179
           G  V+  TPGR+LD   R  +   N+++LV+DEAD +L   +GF   I +I + +P   Q
Sbjct: 142 GCHVVSGTPGRVLDLIKRQVVQTRNVQVLVLDEADELLSETLGFKQQIYDIFARLPPGCQ 201

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQ 236
            ++ SATM+ ++ +V++ F+ +P +I V     + E I   +V    +   +   C L  
Sbjct: 202 VVVVSATMSRDILEVTKKFMSDPVKILVKRDEISLEGISQYYVDVSKEEWKFDTLCDLYD 261

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L     T+   +IFCN +K V  L   L +  F+V ++HG++ Q  R K++++F+ G  
Sbjct: 262 SL-----TITQCVIFCNTRKKVDWLSKKLIQSNFAVVSMHGDMKQEDRDKVMNDFRTGHS 316

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++++D+ ARG+D+  +  V N+D+P   ENYIHRIGR+GR GR G A   + +ED   
Sbjct: 317 RVLISTDVWARGIDVQQISLVINYDMPEIMENYIHRIGRSGRFGRKGVAVNFITREDSSK 376

Query: 357 IDAIEKLIEKKVDWLNGDLSSLN 379
           + A EK+   K+  +  +LS L+
Sbjct: 377 LKATEKMYGIKIKPMPANLSELS 399


>gi|157737778|ref|YP_001490462.1| ATP-dependent RNA helicase DbpA [Arcobacter butzleri RM4018]
 gi|157699632|gb|ABV67792.1| ATP-dependent RNA helicase DbpA [Arcobacter butzleri RM4018]
          Length = 454

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 132/363 (36%), Positives = 200/363 (55%), Gaps = 9/363 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L LS + +  +    Y   T IQ KTIP  LQ  D+   A+TG+GKT +F LP  
Sbjct: 1   MQFSELNLSKEFLQNLDSLEYKTLTLIQEKTIPDALQNKDLIAKAKTGSGKTVAFCLP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
            I+ K +A+    + LIL PTRELA Q+A N     ++ +N+ V  L GG+PF+ Q   L
Sbjct: 59  -IVNKLKAKEFKIQALILAPTRELANQIAQNLRNLSRHIHNVKVLTLCGGVPFKPQVVSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  A +++ TPGR+L H     + + NI   V+DEAD+MLDMGF   I  I   +P  RQ
Sbjct: 118 QHNAHIVVATPGRVLKHIKEKNINLENISTFVLDEADKMLDMGFYDDIMEIIENLPKNRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT    ++  + N L+NP   E++        I   F       S+K AL+  L+
Sbjct: 178 TMLFSATYEKNIETFASNILKNPIYKEISDEKEI--LINQKFYEVTP--SEKTALIPALI 233

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S +  K  +IFCN K     L   L   G  +  +H +++Q+ R + +  F   +  ++
Sbjct: 234 -SHNQAKTTLIFCNMKITCEKLADDLYDLGLDILTLHSDLEQKQRDETMVLFSNKSYPIL 292

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGL I DV  V N+D+    + + HRIGRT RAG+ G A +L  + +I   + 
Sbjct: 293 IATDVASRGLHIDDVDLVINYDLSLDEKIHTHRIGRTARAGKGGLAISLFTENEIDKFEI 352

Query: 360 IEK 362
           I++
Sbjct: 353 IKE 355


>gi|167770986|ref|ZP_02443039.1| hypothetical protein ANACOL_02340 [Anaerotruncus colihominis DSM
           17241]
 gi|167667026|gb|EDS11156.1| hypothetical protein ANACOL_02340 [Anaerotruncus colihominis DSM
           17241]
          Length = 397

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 124/367 (33%), Positives = 212/367 (57%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++DL LS + + AV   G+ + T IQ K IP++L+  ++   A TGTGKT +F +P   I
Sbjct: 18  YSDLLLSEETLKAVERMGFTELTEIQEKAIPVMLEGREIIAKAPTGTGKTCAFGVP---I 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           +EK        + ++L PTREL  Q+ D   +       + VA + GG   + Q   L+R
Sbjct: 75  MEKIDPSALAVQAVVLCPTRELCTQIVDELRELAHFRPQVRVAAVYGGQQIDRQINALKR 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+LDH +R  + ++ + I V+DEAD MLDMGF   +  I   +P  RQ +
Sbjct: 135 GAQIVVATPGRMLDHMHRRTINLSKVSIAVLDEADEMLDMGFYKDVCKILDRLPKERQMV 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT++ E+  +   + ++   + V     +   I    + +  +  +K A L  +L++
Sbjct: 195 MFSATISREVMDIGWLYQRDTVELTVEPVKESQPKIHQYMLESVGR--QKLADLCYILEA 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D  K  +IFCN K +  +L + L ++GF+   ++G++ Q  R +I++ F+ G I ++VA
Sbjct: 253 NDFHKV-MIFCNTKYSTASLSNLLRERGFNADCLNGDMRQSERNQIMARFRSGEISVLVA 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+++P   E Y+HRIGRTGRA + G ++    ++++  +  I 
Sbjct: 312 TDVAARGIDVLDVDAVFNYEIPLENEYYLHRIGRTGRAKKEGVSYIFYGRDELPRLRPII 371

Query: 362 KLIEKKV 368
           +    +V
Sbjct: 372 RYTRSRV 378


>gi|125601387|gb|EAZ40963.1| hypothetical protein OsJ_25445 [Oryza sativa Japonica Group]
          Length = 414

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 126/331 (38%), Positives = 191/331 (57%), Gaps = 5/331 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+  PT IQ + IP  LQ  DV G+ QTG+GKTA+F LP++  L +   R       +L 
Sbjct: 2   GWKAPTRIQAEVIPFALQGRDVIGVGQTGSGKTAAFALPIIQALLEHEHRPCF-FACVLA 60

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA Q+A  FE  G   +L  ++LIGGIP  +Q   L +   V++ TPGR+LDH   
Sbjct: 61  PTRELAIQIAKQFEALGSAISLQCSVLIGGIPRTSQTISLAKRPHVVVGTPGRLLDHLTN 120

Query: 140 GK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
            K    N ++ LV+DEAD +L + F   + +I +++P  R+T LFSATMT++++K+    
Sbjct: 121 TKGFSFNKLKYLVLDEADDLLKVDFQKAVDDILNVIPKERRTFLFSATMTEKVKKLRRAC 180

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           L+NP ++EV +  S  +T+        A+Y K C L+  L +   +M   ++F    ++ 
Sbjct: 181 LKNPVKVEVASKYSLVDTLRQDLYVVPAKY-KDCYLIHVLNKMPGSMI--MVFVRTCEST 237

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             L   L    F   +I G + Q  R+  L+ F+     ++V +D+A+RGLDI  V  V 
Sbjct: 238 RLLALMLRNLRFKAISISGQMSQDKRLGALNRFRTRDCNILVCTDVASRGLDIQGVDVVI 297

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           N+D P  +++YIHR+GRT RAG+ G A +LV
Sbjct: 298 NYDFPLNSKDYIHRVGRTARAGQSGYAVSLV 328


>gi|114647102|ref|XP_001152218.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 4 [Pan
           troglodytes]
          Length = 808

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 130/357 (36%), Positives = 197/357 (55%), Gaps = 6/357 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 98  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 158 LKTHSAQT-GARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I + +P   QT+L
Sbjct: 217 PDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVL 276

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLLQ 240
           FSAT+   L + +   L  P  I ++  +   E ++  F  V    + +    LL+ +++
Sbjct: 277 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLRNMVR 336

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     ++F   K +   L   L  Q  S   I+  +D  +R   L+ F  G    ++
Sbjct: 337 PQDQT---VVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLI 393

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA ++I ++
Sbjct: 394 VTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYL 450


>gi|158293649|ref|XP_001688603.1| AGAP004912-PA [Anopheles gambiae str. PEST]
 gi|157016549|gb|EDO63983.1| AGAP004912-PA [Anopheles gambiae str. PEST]
          Length = 679

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 131/382 (34%), Positives = 211/382 (55%), Gaps = 11/382 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + G    ++       + +PT IQ     + +   D+ GIA+TG+GKT +++LP L
Sbjct: 78  MHFHESGFPQYMLDEFQRQAFKEPTFIQAVGWSIAMSGRDMVGIAKTGSGKTLAYILPAL 137

Query: 61  T-ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             I  + R AR   P  L+L PTRELA Q+    + +G+   +    + GG     Q   
Sbjct: 138 VHISNQPRIARGDGPIALVLAPTRELAQQIKQVCDDFGRRMGIYNTCVFGGASKYPQESD 197

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG +++I TPGR++D   R    +     LV+DEADRMLDMGF P I+ I S +   R
Sbjct: 198 LRRGVEIVIATPGRLIDFLERETTNLRRCTYLVLDEADRMLDMGFEPQIRKIISQIRPDR 257

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCA 233
           Q L++SAT   E++K++E FL++  +I + + +  A     + I+ C    Y + ++   
Sbjct: 258 QVLMWSATWPKEIRKLAEEFLRDYIQINIGSLNLAANENILQIIDCC--EEYEKENRLFK 315

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL+Q + SQ+  K  IIF   K+ V  + + + +QG+    IHG+  Q+ R  +L+ F+ 
Sbjct: 316 LLEQ-ISSQNDGKT-IIFVETKRKVDKIVNVIRRQGWRADGIHGDKSQKDRDYVLNTFRR 373

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            T  ++VA+D+A+RGLD+ DV  V NFD PN  E+Y+HRIGRTGR+   G ++T     +
Sbjct: 374 STNGILVATDVASRGLDVDDVKFVINFDFPNNTEDYVHRIGRTGRSTNKGTSYTFFTPAN 433

Query: 354 IKHIDAIEKLIEKKVDWLNGDL 375
                 +  +++    ++N +L
Sbjct: 434 SSKAPDLITVLQDANQYINPEL 455


>gi|163751114|ref|ZP_02158344.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161329070|gb|EDQ00142.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 445

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 131/374 (35%), Positives = 203/374 (54%), Gaps = 7/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L  +++  +   G   PT IQ + IP+ L   D+   ++TG+GKT +F+LP +
Sbjct: 1   MQFTDFSLDKRLLNTLDHMGIETPTEIQQQAIPVGLSGKDLMASSKTGSGKTLAFLLPAM 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   RA   R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRIISTRALSKRDPRVLILLPTRELANQVYGQLRLLVANTQYKAMKILGGENFNDQAKLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGR+ DH  +  L +N +E+L++DEADRMLD+GF   ++ I       R 
Sbjct: 121 ARDPHFVVATPGRLADHLAQHHLHLNGLELLILDEADRMLDLGFAEQLKAINKAADHKRR 180

Query: 179 QTLLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   L   ++   L++P+ +++   +   + I +  ++A +  +  K ALL 
Sbjct: 181 QTLMFSATLDHGLISNIAAELLKSPEHVDIGAGNIENQDITQRIYLADHLDH--KEALLD 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +L ++ T K  IIF   + +   L   L   G    ++ GN+ Q +R +I+  F  G  
Sbjct: 239 SILNNE-THKQIIIFTATRDDTDRLATKLAASGHKTASLSGNLKQSARNQIMDQFSRGLQ 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A + V  +D   
Sbjct: 298 KILVTTDIASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISFVGPKDWLS 357

Query: 357 IDAIEKLIEKKVDW 370
              I+  + K  ++
Sbjct: 358 FKQIQVFLRKTFEF 371


>gi|168023701|ref|XP_001764376.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684528|gb|EDQ70930.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 689

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 127/328 (38%), Positives = 184/328 (56%), Gaps = 14/328 (4%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE-----KGRARVRMPRTLILEP 80
           PIQ +T   V   +D+ G A+TG GKT +FVLP+L  L      K   R R    ++L P
Sbjct: 135 PIQAQTFEAVFDGNDMVGRARTGQGKTLAFVLPVLESLSQSGYTKNLQRGRAAAVIVLAP 194

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TRELA QV  +FE YG    L+   + GG P+  Q   L RG D+++ TPGRI DHF RG
Sbjct: 195 TRELAKQVHADFETYGSAVGLSTVCVYGGAPYGPQENALRRGVDIVVGTPGRIKDHFERG 254

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV--PFTRQTLLFSATMTDELQKVSENF 198
            L + +++  ++DEAD ML+MGF+  ++ I   V  P   QTLLFSAT+   +Q+++  F
Sbjct: 255 TLNLKSLKFRILDEADEMLNMGFVDDVETILGGVDDPSKVQTLLFSATLPTWVQQIARKF 314

Query: 199 LQNPKR---IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
           L+  ++   +  +     + ++ H  +  +  YS +  L+Q ++    +    I+F   K
Sbjct: 315 LKATRKTVDLVGDEKMKASNSVRHLLLPGH--YSMRTQLVQDVISCYGSGGRIIVFTETK 372

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
            +   L  +L K G +  A+HG+I Q  R   L  F+ G   ++VA+D+AARGLDI DV 
Sbjct: 373 NDASELAGAL-KSG-TARALHGDIPQNQREVTLQGFRTGKFSVLVATDVAARGLDINDVQ 430

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHG 343
            V   + P  AE YIHR GRTGRAG  G
Sbjct: 431 LVIQCEPPRDAETYIHRSGRTGRAGNTG 458


>gi|9955402|dbj|BAB12217.1| vasa homolog [Ciona savignyi]
          Length = 770

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 127/356 (35%), Positives = 195/356 (54%), Gaps = 10/356 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL   V+  V  A Y +PTP+Q  +IP++    D+   AQTG+GKTA+F+LP+LT 
Sbjct: 315 FEVAGLPETVLANVKRANYERPTPVQKYSIPIINADRDLMACAQTGSGKTAAFLLPVLTK 374

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           L          +  + PR +++ PTREL  Q+     K+ +   +   +  GG     Q 
Sbjct: 375 LITNGLQSSQFSEKQTPRAIVVGPTRELIYQIFLEARKFSRGTVVRPVVAYGGTSMNHQI 434

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+RG  +LI TPGR++D  NRG + ++++E +++DEADRMLDMGF   I+ + S    
Sbjct: 435 RDLQRGCHILIATPGRLMDFINRGLVGLDHVEFVILDEADRMLDMGFETEIRKLASSPGM 494

Query: 177 ----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                R TL+FSAT  DE+Q+++ +FL+             A T     +    Q  K+ 
Sbjct: 495 PSKSDRHTLMFSATFPDEIQRLAHDFLREDFLFLTVGRVGGACTDVTQSIIQVDQDDKRA 554

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL+ +    +T    ++F   K+    L   L ++G    +IHG+  Q+ R + L +FK
Sbjct: 555 KLLELISDVAETRSRTLVFVETKRGADFLACMLSQEGCPTTSIHGDRLQQEREQALRDFK 614

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
                +++A+ +AARGLDIP V HV N+D+P   + Y+HRIGRTGR G  G+A T 
Sbjct: 615 SAVCPILIATSVAARGLDIPKVEHVINYDMPKEIDEYVHRIGRTGRCGNLGRATTF 670


>gi|281206327|gb|EFA80516.1| exocyst complex subunit 3 [Polysphondylium pallidum PN500]
          Length = 1349

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 208/372 (55%), Gaps = 8/372 (2%)

Query: 1    MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            + F D+  +P +   +L   Y KPTPIQ    P+ L   D+ GI+QTG+GKT SF LP +
Sbjct: 914  LAFEDMQFAPSI-TNILKVNYEKPTPIQSIGWPVALSGRDMIGISQTGSGKTISFFLPAI 972

Query: 61   T-ILEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
              IL + R       P+ LI+ PTREL+ Q++   + Y K   L   ++ GG     Q +
Sbjct: 973  QHILSQPRQTGPYLGPQVLIIAPTRELSVQISHEAQPYLKAARLNSVVMFGGESKSHQIR 1032

Query: 118  KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             L+R   V+I TPGRI+D    G L +  +   V+DEADRML+MGF   I+ I   +   
Sbjct: 1033 DLKRCPQVVIGTPGRIIDIMKEGYLNLKRVSFFVLDEADRMLEMGFEDQIRAIFENIRPD 1092

Query: 178  RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE-TIEHCFVATYAQYSKKCALLQ 236
            RQ L ++AT   ++Q ++  F+ NP +++V +   TA   I+  F+   ++  K  AL+ 
Sbjct: 1093 RQVLYWTATWPRKVQTLAHEFIVNPVKVQVGSTELTANPNIKQNFIVVDSEKDKVNALVD 1152

Query: 237  QL--LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS-VCAIHGNIDQRSRMKILSNFKE 293
             L  + ++      IIF   K     L   + + G + + +IHG+  Q  R+ I++ FK 
Sbjct: 1153 TLEKIFNERPEAKVIIFTMTKGGADKLAEHIGQIGNARIESIHGDKQQSRRIAIINGFKN 1212

Query: 294  GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
              I ++VA+D+A+RGLDI  +  V NF +P + E+Y+HRIGRT RAG  G++ T+++K  
Sbjct: 1213 NFIDILVATDVASRGLDIRTITDVINFSMPTQIESYVHRIGRTARAGATGESHTIISKSS 1272

Query: 354  IKHIDAIEKLIE 365
            +  I+ I  LIE
Sbjct: 1273 LNDINLIPDLIE 1284


>gi|195108879|ref|XP_001999020.1| GI23306 [Drosophila mojavensis]
 gi|193915614|gb|EDW14481.1| GI23306 [Drosophila mojavensis]
          Length = 702

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 131/352 (37%), Positives = 208/352 (59%), Gaps = 14/352 (3%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE----- 64
           P ++  +   G+ KP+PIQ +  P++LQ HD+ GIAQTGTGKT +F+LP +   E     
Sbjct: 297 PDLLAEIQKQGFTKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTP 356

Query: 65  ---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +G A V     L+L PTRELA Q+    +KY    N+    + GG   + Q   +ER
Sbjct: 357 RGTRGGANV-----LVLAPTRELALQIEMEVKKYSFR-NMKAVCVYGGGSRKMQISDVER 410

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+++ICTPGR+ D    G + +++I  LV+DEADRMLDMGF P I+ +   +   RQT+
Sbjct: 411 GAEIIICTPGRLNDLVQAGVINISSITYLVLDEADRMLDMGFEPQIRKVLLDIRPDRQTI 470

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT    ++++++++++NP ++ V +    A       +        K  +L++ +++
Sbjct: 471 MTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIELLQDDKDKFHVLRKFVEN 530

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+FC +K    +L   L   GFS   IHGN +Q  R + +++ K G +++++A
Sbjct: 531 MTKSDKIIVFCGRKARADDLSSDLSLSGFSTQCIHGNREQCDREQAIADIKSGLVRILIA 590

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +D+A+RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + + V +ED
Sbjct: 591 TDVASRGLDIEDISHVINYDFPRNIEEYVHRVGRTGRAGRRGTSISFVTRED 642


>gi|159042331|ref|YP_001541583.1| DEAD/DEAH box helicase domain-containing protein [Caldivirga
           maquilingensis IC-167]
 gi|157921166|gb|ABW02593.1| DEAD/DEAH box helicase domain protein [Caldivirga maquilingensis
           IC-167]
          Length = 359

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 120/349 (34%), Positives = 194/349 (55%), Gaps = 11/349 (3%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
           A+ + G+ +PT +Q   IP +L   +V   A+TG+GKTA+++LP +++++       +  
Sbjct: 13  AISEYGFNEPTEVQRSVIPKILDGFNVAMQARTGSGKTAAYLLPTMSMMKGD-----LGE 67

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L++ PTRELA Q+ + F  + K      A++ GG+ +  Q K L R A +++ TPGR+L
Sbjct: 68  ALVISPTRELALQIMNQFLIFNKYTKFNSAVVYGGVGYSGQVKAL-RDASLIVATPGRLL 126

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D   +  + ++N++ L+IDE DRMLDMGFI  +  I+SL    +QT   +AT+  E+  V
Sbjct: 127 DLTGKSIVDLSNVKYLIIDEVDRMLDMGFIKDVYTISSLTGNRKQTHAATATLPSEVHDV 186

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
            +  L+NP  I V+        ++         +  K  L  ++L+ +      IIF N 
Sbjct: 187 VKRVLRNPLFIRVSNHEYELPMVDQLVYLVDGSWRSKYGLTGKVLEGKS-----IIFVNT 241

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           ++    L   L   G  V  +HG + Q +R   L  F+E     ++++DLA+RGLDI DV
Sbjct: 242 RERAYRLYRQLRNDGLRVLLLHGGMRQETRESTLRRFRELDSGSLISTDLASRGLDIIDV 301

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
             + NFD P   E YIHRIGRT R  R GKA TL  +++++ ++ + KL
Sbjct: 302 NLILNFDAPRDPETYIHRIGRTARLNRRGKAITLATRDELRILNEVTKL 350


>gi|221134543|ref|ZP_03560848.1| DEAD/DEAH box helicase-like protein [Glaciecola sp. HTCC2999]
          Length = 452

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 203/367 (55%), Gaps = 9/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L  ++V  + +  + +PTP+Q  TIP  +   D+   ++TG+GKT +FVLP++
Sbjct: 7   LTFSDLNLDHRIVTTLTNKHFTEPTPVQANTIPYAMIGRDILCCSKTGSGKTFAFVLPII 66

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L  +K  A+ R  R LIL PTRELA QV            L   L++GG  F  Q K 
Sbjct: 67  HRLMNQKSFAK-RDARALILAPTRELAKQVYLEVRALVSALPLKAQLVVGGENFNDQVKA 125

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-T 177
           L     +++ T GR+ DH +   + +N +EILV DEADRMLD+GF   +  I        
Sbjct: 126 LRHNPQIIVGTAGRVADHLSGRTVFLNGLEILVYDEADRMLDLGFAKQLLEINQAADHRK 185

Query: 178 RQTLLFSATM-TDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           RQT+LFSAT+ +  L  +++  L+ P++I +++  +    I +  + A + ++  K ALL
Sbjct: 186 RQTMLFSATLDSPSLTHLTDTLLKQPEKIMLDSSFTIHSDITQQWYFADHIEH--KHALL 243

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +L   +     I+FC  +++ V L   L +      A+ G++ Q  R  ++S+F  G 
Sbjct: 244 AAILNEVE-HNQAIVFCATREDTVRLKDLLNEANLDAIALSGDLLQNQRAHVMSSFISGQ 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++V +D+A+RGLD+  V  V NFD+P  AE Y+HRIGRTGRAG  G A  LV   D  
Sbjct: 303 HSVLVTTDVASRGLDMKKVSLVVNFDLPKLAEEYVHRIGRTGRAGAKGLAIALVGPRDWT 362

Query: 356 HIDAIEK 362
               I++
Sbjct: 363 AFTHIQR 369


>gi|70985190|ref|XP_748101.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus fumigatus Af293]
 gi|66845729|gb|EAL86063.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus fumigatus Af293]
          Length = 505

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 200/370 (54%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L +
Sbjct: 112 FEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSIGILQV 171

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 172 ID---TVVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYG 228

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q ++
Sbjct: 229 QHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVV 288

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P R+ V     T E I+  F+A   +   +   C L   L 
Sbjct: 289 VSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTL- 347

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++
Sbjct: 348 ----TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVL 403

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  
Sbjct: 404 ISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRD 463

Query: 360 IEKLIEKKVD 369
           IE     ++D
Sbjct: 464 IELYYSTQID 473


>gi|290996658|ref|XP_002680899.1| predicted protein [Naegleria gruberi]
 gi|284094521|gb|EFC48155.1| predicted protein [Naegleria gruberi]
          Length = 452

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 135/370 (36%), Positives = 204/370 (55%), Gaps = 28/370 (7%)

Query: 18  DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--MLTILEKGRARVRMPRT 75
           +  + +PT IQ +  P+V+  +D+ G+A+TG+GKT +F+LP  M  + +K   +   P  
Sbjct: 46  EMNFKEPTAIQKQAWPIVMSGNDMIGLAETGSGKTLAFLLPGLMHVLAQKELKKGDGPIM 105

Query: 76  LILEPTRELAAQVADNFEKY-------GKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
           +IL PTRELA Q+    E +        K+  L +A L GG   + Q K+      V+I 
Sbjct: 106 VILTPTRELAIQIHGACENFCNAFVPDSKDRALKIACLYGGEVRKTQIKECRSKPQVIIA 165

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR+LD    G   M     LV+DEADRMLDMGF P I  ITS V   RQTL FSAT  
Sbjct: 166 TPGRLLDFLQAGITNMKRCSYLVLDEADRMLDMGFNPQISQITSQVTPDRQTLFFSATWN 225

Query: 189 DELQ--------KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA----LLQ 236
             +Q        K   +F+ N   IE    +S    ++  F+  + Q S K A    LL 
Sbjct: 226 RSVQSMAMSYVSKAEPHFIVNIGSIE----TSANHRVKQSFL--FIQESDKIARLTDLLD 279

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L+++ +  +  ++FC  KK    +   L + G+   +IHG   Q  R  +L  F+ G  
Sbjct: 280 KLIKNPEDCRT-LVFCKTKKRTDVVTERLREAGWPSLSIHGERKQEEREWVLEEFRSGKT 338

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+ +V +V N+D+P+  ++YIHRIGRTGRAG+ G + +    ED++ 
Sbjct: 339 PILVATDVAARGLDVENVKYVINYDMPHEIDSYIHRIGRTGRAGKEGNSVSFFTPEDVQL 398

Query: 357 IDAIEKLIEK 366
              + K++E+
Sbjct: 399 CTPLIKVLEE 408


>gi|115637407|ref|XP_796437.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41,
           partial [Strongylocentrotus purpuratus]
 gi|115949877|ref|XP_001190893.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41,
           partial [Strongylocentrotus purpuratus]
          Length = 603

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 135/382 (35%), Positives = 207/382 (54%), Gaps = 26/382 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G  KPTPIQI+ +P++L+  D+ GIA TG+GKT  F LP++  
Sbjct: 164 FKEMKFPKSIIYGLKKKGITKPTPIQIQGLPVILEGRDMIGIAFTGSGKTLVFSLPIVMF 223

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGK------NYNLTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q  D    + K         L   L IGG+ 
Sbjct: 224 ALEQEKRMPFIKNEGPYGLIICPSRELARQTHDGIMHFIKCLEADNQPTLRSMLCIGGVS 283

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q   +  G  +++ TPGR++D  N+    ++    L +DEADRM+D+GF   I+ I 
Sbjct: 284 VKEQMDAVRSGVHIVVATPGRLIDMLNKKCFTLSVCRYLCLDEADRMIDLGFEEDIRTIL 343

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +     RQTLLFSATM  ++Q  +++ L  P  + VN   + A +++   V    +Y K+
Sbjct: 344 TYFKSQRQTLLFSATMPKKIQNFAKSALVRP--VTVNVGRAGAASLD---VIQEVEYVKQ 398

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q      +IF  +K +V ++   L  +G    AIHG  DQ  R K +  
Sbjct: 399 EAKMVYLLECLQKAPPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEERTKSIEQ 458

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+     ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 459 FRAREKDVLVATDVASKGLDFPDIQHVINYDMPEDIENYVHRIGRTGRCGKTGIATTFIN 518

Query: 351 K-------EDIKH--IDAIEKL 363
           K        D+KH  I+A +KL
Sbjct: 519 KACDESVLRDLKHLLIEAKQKL 540


>gi|124506471|ref|XP_001351833.1| RNA helicase-1 [Plasmodium falciparum 3D7]
 gi|23504859|emb|CAD51640.1| RNA helicase-1 [Plasmodium falciparum 3D7]
          Length = 665

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 211/379 (55%), Gaps = 17/379 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     ++  +      KPT IQ++ +P +L   D+ GIA TG+GKT  FVLP++ 
Sbjct: 218 NFKDMKFPKAILKGLRKKNIKKPTQIQMQGLPSILLGRDIIGIAFTGSGKTIVFVLPLIM 277

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEK-----YGKNY-NLTVALLIGGI 110
              +   R ++     P  LI+ P+RELA Q  +  +      Y  N+  L    +IGGI
Sbjct: 278 KCLEAEIRCKLEEGEGPIGLIICPSRELATQTHNIIKYFCEFLYKDNFPTLRSLCMIGGI 337

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q +++++G  +++ TPGR+ D  N+ ++ +     L  DEADR++D+GF   ++N 
Sbjct: 338 SAYEQGREIQKGIHMIVATPGRLNDMLNKKRMTLEQCRYLCFDEADRLIDLGFEEEVRNT 397

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q+ +++ L NP  I +N   + A  ++      Y +   
Sbjct: 398 LDHFSNQRQTLLFSATMPKKIQEFAKSTLVNP--IIINVGRAGAANLDVIQEVEYVKEEF 455

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K + L ++LQ   T    +IFC  KK+V ++   L  +G +  AIHGN+ Q  R + ++ 
Sbjct: 456 KLSYLLEVLQK--TGPPVLIFCENKKDVDDVHEYLLLKGVNAVAIHGNLGQSERQEAINL 513

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++V +D+A++GLD P + HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 514 FREGKKDILVGTDVASKGLDFPSIEHVINYDMPKDIENYVHRIGRTGRCGKTGIATTFIN 573

Query: 351 K--EDIKHIDAIEKLIEKK 367
           K  E+   +D    LIE K
Sbjct: 574 KNQEEAILLDLKALLIEAK 592


>gi|332016384|gb|EGI57297.1| Putative ATP-dependent RNA helicase DDX49 [Acromyrmex echinatior]
          Length = 461

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 141/381 (37%), Positives = 206/381 (54%), Gaps = 22/381 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L+  ++      G  KPTPIQ   IP +L   D  G A+TG+GKT +FVLP+L  
Sbjct: 13  FSDLKLNSWLLAQCESMGLKKPTPIQQNCIPRILMGEDCIGCAKTGSGKTLAFVLPILQK 72

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     L+L PTRELA Q+AD F   GK  NL   +++GG+    Q  +L + 
Sbjct: 73  LCEDPYGIF---ALVLTPTRELAFQIADQFTAIGKAINLKKCVIVGGMDMMVQGLELSKR 129

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++ TPGR+ DH +      +  I+ LV+DEADR+L   F   ++ I + +P  +Q L
Sbjct: 130 PHIVVATPGRLADHLDSCDTFSLQKIKFLVLDEADRLLGGHFDGQLKTIFAALPKQKQVL 189

Query: 182 LFSATMTDELQKV-----SENF-LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            FSATMTD L KV     +E F  Q      + T     +    C       Y     L+
Sbjct: 190 FFSATMTDTLDKVKQIASAEVFTWQEEDDFGIATVKELDQRYVLCPKDVLDSY-----LV 244

Query: 236 QQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           + +   + T +NG  +IF +  K    L   L   GF+  A+H  I Q+ R+  L+ FK 
Sbjct: 245 EVIKTFRTTNENGSIMIFTDTCKYCQLLSMMLNNVGFTNVALHAMIKQKERLAALNKFKS 304

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             +Q+++A+D+AARGLDIP V  + N  +PN  + YIHR+GRT RAG++G + +L+   D
Sbjct: 305 NHVQILIATDVAARGLDIPTVQLIINHVIPNVPKEYIHRVGRTARAGKNGMSISLITPND 364

Query: 354 IKHIDAIE-----KLIEKKVD 369
           IK + AIE     KL E K+D
Sbjct: 365 IKLLHAIENVIGIKLTEYKID 385


>gi|254567599|ref|XP_002490910.1| Putative ATP-dependent RNA helicase of the DEAD-box family involved
           in ribosomal biogenesis [Pichia pastoris GS115]
 gi|238030707|emb|CAY68630.1| Putative ATP-dependent RNA helicase of the DEAD-box family involved
           in ribosomal biogenesis [Pichia pastoris GS115]
 gi|328352552|emb|CCA38951.1| hypothetical protein PP7435_Chr2-1277 [Pichia pastoris CBS 7435]
          Length = 498

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 126/339 (37%), Positives = 204/339 (60%), Gaps = 7/339 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTLILE 79
           + KPT IQ  + P +L+ +DV G+A+TG+GKT +F +P ++ +L+K    +++   L++ 
Sbjct: 112 FDKPTTIQAVSWPYLLKGNDVIGVAETGSGKTFAFGVPAISHVLQKNSKGLQV---LVIS 168

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA Q+ DN ++      L    + GG+  + Q +++++ +  +I TPGR+LD    
Sbjct: 169 PTRELAVQIYDNLKQLTDLCGLECCCIYGGVSKDDQRRQVKQ-SQCVIATPGRLLDLMEE 227

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
           G + +  I  LV+DEADRML+ GF   I++I + V   RQTL+F+AT   E+++++ +F+
Sbjct: 228 GSIDLTGINYLVLDEADRMLEKGFEEAIKSIMANVNTDRQTLMFTATWPKEVRELASHFM 287

Query: 200 QNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           ++P ++ V      +A       V     Y K+  LLQ L +        +IF   KK  
Sbjct: 288 KSPVKVTVGDRDELSANKKITQIVEVIDPYDKEKKLLQLLSKYSKNDDKILIFALYKKEA 347

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +  +L  +G+ V AIHG++ Q+ R + L++FK G   L++A+D+AARGLDIP+V  V 
Sbjct: 348 TRVERTLNYKGYKVSAIHGDLSQQQRTQSLNDFKTGKSSLLLATDVAARGLDIPNVKVVI 407

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           N   P   E+Y+HRIGRTGRAG+ G A TL  + + KH+
Sbjct: 408 NLTFPLTVEDYVHRIGRTGRAGKTGIAHTLFTEHE-KHL 445


>gi|224098856|ref|XP_002311293.1| predicted protein [Populus trichocarpa]
 gi|222851113|gb|EEE88660.1| predicted protein [Populus trichocarpa]
          Length = 496

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 156/435 (35%), Positives = 227/435 (52%), Gaps = 46/435 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGLS   +    + G   PT +Q   IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 64  FSDLGLSEWALQTCKELGMKNPTQVQSHCIPKILSGRDVLGLAQTGSGKTAAFALPILHR 123

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    V     L++ PTRELA Q+A+ F  +G   +L  A+++GG+    Q K L   
Sbjct: 124 LAEDPFGVF---ALVITPTRELAYQLAEQFRAFGSCLHLRCAVVVGGMDLLTQAKTLMGR 180

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEI---------LVIDEADRMLDMGFIPYIQNITSL 173
             V+I TPGRI       K+L+ N +I         LV+DEADR++D+GF   ++ +   
Sbjct: 181 PHVVIATPGRI-------KVLLENPDISPVFSRTKFLVLDEADRLIDVGFQEELRVVFKC 233

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK--K 231
           +P +RQTLLFSATMT ELQ + E         E      T +T+       Y Q  K  K
Sbjct: 234 LPKSRQTLLFSATMTSELQTLLELSENKAYFYEEYEGFKTVDTLNQ----QYIQMPKNVK 289

Query: 232 CALLQQLLQSQDTM--KNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              L  +L   + M  ++ IIF   C+  + + +L   L+ +  ++ ++     Q +R+ 
Sbjct: 290 EVYLVYILSKMEEMGIRSAIIFVSACSTCRLLSSLLKELDHEPATLYSLES---QSARLA 346

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  FK G   +++A+DLA+RGLDIP V  V N+D+P    +Y+HR+GRT RAGR G A 
Sbjct: 347 SLHRFKSGQASILIATDLASRGLDIPTVDLVINYDLPRDPTDYVHRVGRTARAGREGLAV 406

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWL----NGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           +LVA+ D K + AIE  + K+ +      N  LS         DI +   AR+   +   
Sbjct: 407 SLVAQHDGKLMKAIEAEVGKQFEKFECKENEVLS---------DITKVYKARRVAKMKMM 457

Query: 403 STGFDRRKKNYSSQK 417
             GFD   K    QK
Sbjct: 458 DDGFDELVKERKKQK 472


>gi|163782068|ref|ZP_02177067.1| ATP-dependent RNA helicase DeaD [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882600|gb|EDP76105.1| ATP-dependent RNA helicase DeaD [Hydrogenivirga sp. 128-5-R1-1]
          Length = 361

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 209/368 (56%), Gaps = 11/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    LS ++  A+ +  + KPTPIQ   IP+ L+  D+   A+TGTGKT +F +P++
Sbjct: 1   MQFNFNQLSNRLQNALEEIEFTKPTPIQESAIPVALEGKDLLIQARTGTGKTGAFGIPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++G       R L+L PTRELA Q+ D+     +   ++V    GG         LE
Sbjct: 61  EKLKRGE------RALVLAPTRELAIQIRDHLRDLARFSKISVFSFYGGTSVGRDLSLLE 114

Query: 121 RG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           R   DV++ TPGRI D   RG L ++  + LV+DE D MLDMGF   I+ I S +P  RQ
Sbjct: 115 RRIPDVVVGTPGRIKDLIERGALKLDTFKYLVLDEVDIMLDMGFREDIEWIVSKLPEERQ 174

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE-TIEHCFVATYAQYSKKCALLQQL 238
           T   SAT+  E+++++  F++ P    ++  S   +  I    V T ++  K    L+++
Sbjct: 175 TFFVSATVPREIREIARKFMK-PGFEHISVESEELKPRINEIVVRTRSEIHK-TEELERI 232

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+  D  K  I+F   K+N   L ++L K+G++V A+HG++ Q+ R  ++  F+   +++
Sbjct: 233 LRENDDEKI-IVFVKMKRNAKELAYTLRKKGYNVEALHGDMTQKRRETVMKLFRNNRVKV 291

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDI  V  + NF +P     Y HRIGRTGR G  G A +LV+  + +++ 
Sbjct: 292 LIATDVASRGLDIEGVSMIINFHLPEDPRVYTHRIGRTGRFGSEGTAISLVSPSEKRNLW 351

Query: 359 AIEKLIEK 366
            IEK  EK
Sbjct: 352 RIEKHREK 359


>gi|227827050|ref|YP_002828829.1| DEAD/DEAH box helicase [Sulfolobus islandicus M.14.25]
 gi|229584218|ref|YP_002842719.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.27]
 gi|227458845|gb|ACP37531.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.14.25]
 gi|228019267|gb|ACP54674.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.27]
          Length = 360

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/357 (36%), Positives = 206/357 (57%), Gaps = 20/357 (5%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           LS  +  A+ +AGY+KPT +Q   IP ++    V   A+TG+GKTA++V+P+L       
Sbjct: 22  LSEDLRKALNEAGYIKPTRVQEVVIPELMNGKSVIVQAKTGSGKTAAYVIPILE------ 75

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
              R    LIL PTRELA Q+ D  +K GK   + V+L+IGGI ++ Q     R + +++
Sbjct: 76  ---RNSTALILSPTRELATQILDEIKKLGKYKQIDVSLIIGGISYDDQ-----RQSKIVV 127

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+LD +++GK+  +  + +++DEADRMLDMGFI  I+ I +     +    FSAT+
Sbjct: 128 GTPGRLLDLWSKGKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCN-AKIAGFFSATI 186

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
            DE+  +++ F ++ + I ++      E ++  FV     ++ K +   +LL+  D  K 
Sbjct: 187 PDEIMTLAKEFSKDLREIVLD-EYKPVEEVKQKFVKVRNDWNDKVS---KLLEEIDGEKI 242

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            ++F   +     L + L+ +G +V  + G++ Q  R+K    FK+G   ++VA+DLA+R
Sbjct: 243 -LVFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVATDLASR 301

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           G+DI DV  V NFD+P   E YIHR+GRTGR GR G+A T     +   I  I  L+
Sbjct: 302 GIDIIDVNKVINFDIPRDVETYIHRVGRTGRMGRVGQAITFYTFREADMIKRINNLL 358


>gi|166710339|ref|ZP_02241546.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 429

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 191/367 (52%), Gaps = 12/367 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           D   L L P    A+  AG    TPIQ+  IP +L   D+   AQTG+GKT ++ LP+L 
Sbjct: 6   DSLSLQLPPLFESALARAGVRTLTPIQVAMIPPMLAARDLIATAQTGSGKTLAYALPLLQ 65

Query: 62  ILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQN 116
             ++ +   + PR L   IL PTREL AQVA             L +    GG     Q 
Sbjct: 66  --QRLQVPEQAPRVLGGLILVPTRELVAQVAQTLLSLAAALPRGLKIVAATGGEAINPQL 123

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GAD++I TPGR+LD      L ++ +  LV+DEADR+LD+GF   +  I +L+P 
Sbjct: 124 MALRGGADIVIATPGRLLDLVTHNALRLSQVRTLVLDEADRLLDLGFGAELDRILALLPA 183

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVN-TPSSTAETIEHCFVATYAQYSKKCALL 235
            RQ++L SAT    +  +++  L++P RI ++ TP       +H       Q ++   LL
Sbjct: 184 QRQSVLVSATFPPAIASLAKRRLRDPLRITIDATPEHAPAIAQHAIAVDAGQRTQ---LL 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + LLQ +      ++F   +     +   L K G     +HG + Q  R + L  FK+  
Sbjct: 241 RHLLQ-EHAWPQLLVFVASRHTADKVAEKLSKTGIEALPLHGELSQGRRERTLRAFKQAD 299

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+DLAARG+DI  +  V N+D+P    +Y HRIGRT RAG  G+A + V  E  +
Sbjct: 300 VQVLVATDLAARGIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGEAISFVTAERAQ 359

Query: 356 HIDAIEK 362
               IEK
Sbjct: 360 QWRLIEK 366


>gi|156094360|ref|XP_001613217.1| ATP-dependent helicase [Plasmodium vivax SaI-1]
 gi|148802091|gb|EDL43490.1| ATP-dependent helicase, putative [Plasmodium vivax]
          Length = 720

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 132/390 (33%), Positives = 209/390 (53%), Gaps = 30/390 (7%)

Query: 3   FADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FAD+  ++P +   +   G  + T IQ ++   + +  D+ G ++TG+GKT +F LP++ 
Sbjct: 127 FADVPEINPNIAKFLSSKGINQMTKIQAQSFRPIYEGRDIIGRSETGSGKTLAFALPLVE 186

Query: 62  ILEK---GRA------------------------RVRMPRTLILEPTRELAAQVADNFEK 94
            L K   GR+                          + P  L+LEPTREL+ QV + F++
Sbjct: 187 KLYKVKMGRSGEGVSPSTPHLESANHFGGTNQPDDSKNPSILVLEPTRELSKQVENTFKE 246

Query: 95  YGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDE 154
             + YN  +  + GG  +  Q  KL +G ++L  TPGRI+DH  R  L + NI+ LV+DE
Sbjct: 247 ISQFYNFNIMSIYGGESYVYQEAKLRKGIEILTGTPGRIIDHLERKNLSLQNIKYLVLDE 306

Query: 155 ADRMLDMGFIPYIQNITSLVPFTR-QTLLFSATMTDELQKVSENFLQNPKRIEV-NTPSS 212
           AD ML++GF   ++ I S +     Q LL+SAT    ++ +S  +++NP  I+V ++ + 
Sbjct: 307 ADEMLNLGFTHDLERILSYINLKEAQILLYSATTPSWIKDISSKYMKNPFFIDVVDSSNK 366

Query: 213 TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
           T++ I+H  + T     +K  LL+ ++  +      IIF   K     LC     +  S 
Sbjct: 367 TSKNIKHIAIKTPYDIKEKALLLEDIILVKSNGGQVIIFTRTKLEADILCSEGSFKSLSF 426

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
             +HGNI Q +R   +  F++G  Q+++A+D+AARGLDI +V  V     PN AE YIHR
Sbjct: 427 AVLHGNIAQTTREHTMQRFRQGMFQILIATDIAARGLDISNVDLVIQCFPPNYAEIYIHR 486

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
            GRTGRA + G +  L + ED + +  IEK
Sbjct: 487 AGRTGRANKKGISVVLFSTEDKQDLVKIEK 516


>gi|323474157|gb|ADX84763.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           REY15A]
 gi|323476770|gb|ADX82008.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           HVE10/4]
          Length = 360

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 127/357 (35%), Positives = 204/357 (57%), Gaps = 20/357 (5%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           LS  +  A+ +AGY+KPT +Q   IP ++    V   A+TG+GKTA++V+P+L       
Sbjct: 22  LSEDLRKALNEAGYIKPTRVQEVVIPELMNGKSVIVQAKTGSGKTAAYVIPILE------ 75

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
              R    LIL PTRELA Q+ D  +K GK   + V+L+IGG+ ++ Q     R + +++
Sbjct: 76  ---RNSTALILSPTRELATQILDEIKKLGKYKQIDVSLIIGGMSYDDQ-----RQSKIVV 127

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+LD +++GK+  +  + +++DEADRMLDMGFI  I+ I +     +    FSAT+
Sbjct: 128 GTPGRLLDLWSKGKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCN-AKIAGFFSATI 186

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
            DE+  ++E F ++ + I ++      E ++  FV     ++ K + L + +  +  +  
Sbjct: 187 PDEIMTLAEEFSKDLREIVLD-EYKPVEEVKQKFVKVRNDWNDKVSKLLEEINGEKIL-- 243

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
             +F   +     L + L+ +G +V  + G++ Q  R+K    FK+G   ++VA+DLA+R
Sbjct: 244 --VFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVATDLASR 301

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           G+DI DV  V NFD+P   E YIHR+GRTGR GR G+A T     +   I  I  L+
Sbjct: 302 GIDIIDVNKVINFDIPRDVETYIHRVGRTGRMGRVGQAITFYTFREADMIKRINNLL 358


>gi|224083374|ref|XP_002307002.1| predicted protein [Populus trichocarpa]
 gi|222856451|gb|EEE93998.1| predicted protein [Populus trichocarpa]
          Length = 895

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 133/381 (34%), Positives = 203/381 (53%), Gaps = 15/381 (3%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML------ 60
           GL+ K++  +    Y KP  IQ + +P+++   D  GIA+TG+GKT +FVLPML      
Sbjct: 261 GLTSKILETIKKLNYEKPMTIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQ 320

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +E G      P  LI+ PTREL  Q+  +  K+ K   +    + GG     Q  +L+
Sbjct: 321 PPVEAGEG----PIGLIMAPTRELVQQIHSDIRKFTKALGIRCVPVYGGSGVAQQISELK 376

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RG ++++CTPGR++D    + GK+  +  +  LV+DEADRM DMGF P I  I   +   
Sbjct: 377 RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 436

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            QT+LFSAT   +++ ++   L  P  I+V   S   + I    V    +  +   LL+ 
Sbjct: 437 HQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDINQ-LVEVRPEGERWFRLLE- 494

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL         ++F   +     L   L K G    ++HG  DQ  R   +S+FK     
Sbjct: 495 LLGVWSEKGKILVFVQSQDKCDALFRDLLKFGHPCLSLHGAKDQTDRESTISDFKSNVCN 554

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR+GRTGRAGR G A T  +++D ++ 
Sbjct: 555 LLIATSVAARGLDVKDLELVINYDVPNHYEDYVHRVGRTGRAGRKGCAITFFSEDDARYA 614

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K +E     +  DL +L
Sbjct: 615 PDLVKALELSEQVVPQDLKAL 635


>gi|149370359|ref|ZP_01890048.1| inducible ATP-independent RNA helicase [unidentified eubacterium
           SCB49]
 gi|149355910|gb|EDM44467.1| inducible ATP-independent RNA helicase [unidentified eubacterium
           SCB49]
          Length = 445

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 124/362 (34%), Positives = 212/362 (58%), Gaps = 10/362 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F  LG+   +V  +     + PT IQ K IP+VL Q+ DV GIA+TGTGKTA+F LP+L 
Sbjct: 5   FKSLGVDSFLVKGLKTLDILAPTDIQTKIIPVVLNQKDDVVGIAKTGTGKTAAFGLPLLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120
            ++     ++    ++L PTREL  Q+  N   + K    +++A   GG+P + Q ++L+
Sbjct: 65  QIDVNNNDIQ---AIVLAPTRELGQQIYKNLSDFAKFKPEISIASTCGGVPIKPQIERLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR++D   R  + ++N   LVIDEAD M+ +     +  I   +P  R+T
Sbjct: 122 DPTHIVVATPGRLIDLLERKAVAISNASYLVIDEADEMVTI-LKEGLDKIVKGLPKKRRT 180

Query: 181 LLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LF+AT++ E++++ +N+L +    IEV+  +   + I+H +V    +  +K  +L   L
Sbjct: 181 FLFTATLSGEIKQLVQNYLSKKVSHIEVDMATLGHQGIDHQYVVVNPE--EKLDVLMHFL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S++  + GIIFC  K  V  L   L    FS  AIHG++ Q  R +I+  F+ G I ++
Sbjct: 239 SSKEGQR-GIIFCKTKAAVNKLAKKLAIHKFSSGAIHGSLSQPIRDRIMDQFRAGHINIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+DLAARG+D+ ++ +V  + +P+  + Y+HR GRT RAG  G + +++ +E+++ +  
Sbjct: 298 IATDLAARGIDVKEISYVVQYHLPDTFDAYVHRSGRTARAGAKGLSLSVIQQEEVQDMPE 357

Query: 360 IE 361
           +E
Sbjct: 358 LE 359


>gi|74191640|dbj|BAE30391.1| unnamed protein product [Mus musculus]
          Length = 622

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 198/361 (54%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G + PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 183 FKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 242

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 243 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMS 302

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 303 VKEQMETIRHGVHMMVATPGRLMDSLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 362

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + +N   + A +++   V    +Y K+
Sbjct: 363 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKE 417

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 K 351
           K
Sbjct: 538 K 538


>gi|256396921|ref|YP_003118485.1| DEAD/DEAH box helicase [Catenulispora acidiphila DSM 44928]
 gi|256363147|gb|ACU76644.1| DEAD/DEAH box helicase domain protein [Catenulispora acidiphila DSM
           44928]
          Length = 795

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 108/293 (36%), Positives = 171/293 (58%), Gaps = 2/293 (0%)

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
           P  L++ PTRELA QV ++    GK     V  + GG  +E Q   L  G D+++ TPGR
Sbjct: 133 PLGLVVVPTRELAVQVTEDLAAAGKVMAARVQSVYGGRAYEPQIAALSAGVDLVVGTPGR 192

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           +LD   +G L ++ + +LV+DEAD MLD+GF+P ++ I + VP  RQTLLFSATM  ++ 
Sbjct: 193 LLDLAKQGHLDLSGVRMLVLDEADEMLDLGFLPDVERIVTQVPKDRQTLLFSATMPGQVI 252

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCALLQQLLQSQDTMKNGIIF 251
            ++  ++  P  I    P  T  T+ +     Y  ++  K  +L ++LQ++      ++F
Sbjct: 253 ALARQYMSRPTHIRAADPHDTGTTVANTTQWIYRAHALDKTEMLARMLQAEGRGLT-MVF 311

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           C  K+    +   LE +G++  A+HG++ Q +R + L  F+ G + ++VA+D+AARG+D+
Sbjct: 312 CRTKRTAAKVAEELESRGYAAAAVHGDLGQGAREQALRAFRNGKVDVLVATDVAARGIDV 371

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
             V HV NF  P   + Y+HRIGRTGRAG  G A T V  +++   + I K +
Sbjct: 372 EGVTHVVNFQCPEDDKTYLHRIGRTGRAGASGIAVTFVDWDEVPRWNLINKTL 424



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 32/50 (64%)

Query: 11 KVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
          ++  A+   G + P PIQ  TIP+ L   DV G A+TGTGKT +F +P+L
Sbjct: 4  RIAEALSAGGIITPFPIQAATIPVALTGADVIGQAKTGTGKTLAFGIPVL 53


>gi|114647106|ref|XP_001152033.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1 [Pan
           troglodytes]
          Length = 735

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/357 (36%), Positives = 197/357 (55%), Gaps = 6/357 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 98  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 158 LKTHSAQTGA-RALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I + +P   QT+L
Sbjct: 217 PDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVL 276

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLLQ 240
           FSAT+   L + +   L  P  I ++  +   E ++  F  V    + +    LL+ +++
Sbjct: 277 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLRNMVR 336

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     ++F   K +   L   L  Q  S   I+  +D  +R   L+ F  G    ++
Sbjct: 337 PQD---QTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLI 393

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA ++I ++
Sbjct: 394 VTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYL 450


>gi|146101459|ref|XP_001469120.1| ATP-dependent RNA helicase [Leishmania infantum]
 gi|134073489|emb|CAM72220.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
          Length = 924

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 129/360 (35%), Positives = 197/360 (54%), Gaps = 27/360 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFADL + P +   +   GY KPTP+Q   IP+ L   D+   AQTG+GKTA+F++P++ 
Sbjct: 473 DFADLLVEPALAANIERCGYKKPTPVQRYGIPVALSGSDLMACAQTGSGKTAAFLIPVVQ 532

Query: 62  IL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +        R R   P  L+L PTRELA Q+ D   K   N ++   ++ GG  +    
Sbjct: 533 YMLVHGVSPARQRKSYPIALVLAPTRELAVQIFDEVRKLTFNTDIFYDVVYGGTRYP--- 589

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--- 173
           ++ E+  D+L+  PGR+ D FN   L  + I+ L++DEADRML+MGF   I+ + +    
Sbjct: 590 QRFEQ--DILVACPGRLRDMFNEEYLSFSAIKFLILDEADRMLEMGFEEQIEELVASRYT 647

Query: 174 -VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEV-----NTPSSTAETIEHCFVATY 225
            +P    RQT +FSAT    +  +++ +L+    +       +T  +  +TIEH      
Sbjct: 648 DMPTVDERQTFMFSATFPQRILNLAKRYLRRKYYLLTVGRVGSTTKNITQTIEHV----- 702

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
              ++K   L Q++   +     +IF   KK   ++   L ++G S   IHG+  Q+ R 
Sbjct: 703 -PDNEKMDRLLQIIYGHEMSDMVLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDRE 761

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L +FK+    ++VA+D+A+RGLDIPDV HV  FD+P   ++Y HRIGRTGRAG  G A
Sbjct: 762 AALEDFKQKVTPILVATDVASRGLDIPDVAHVVQFDLPQEMDDYTHRIGRTGRAGNKGIA 821


>gi|296212991|ref|XP_002753123.1| PREDICTED: ATP-dependent RNA helicase DDX54, partial [Callithrix
           jacchus]
          Length = 471

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 132/359 (36%), Positives = 197/359 (54%), Gaps = 10/359 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 98  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 158 LKTHSAQTGA-RALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I + +P   QT+L
Sbjct: 217 PDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVL 276

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS- 241
           FSAT+   L + +   L  P  I ++  +   E ++  F     +   K A+L  LL++ 
Sbjct: 277 FSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFF--LVREDTKAAVLLHLLRNV 334

Query: 242 ---QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              QD     ++F   K +   L   L  Q  S   I+  +D  +R   L+ F  G    
Sbjct: 335 VRPQD---QTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSA 391

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ +DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA ++I ++
Sbjct: 392 LIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYL 450


>gi|125556618|gb|EAZ02224.1| hypothetical protein OsI_24319 [Oryza sativa Indica Group]
          Length = 620

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 146/410 (35%), Positives = 223/410 (54%), Gaps = 26/410 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L   ++ A+   G  KPTPIQ++ +P+ L   D+ GIA TG+GKT  FVLP+  I
Sbjct: 176 FGDLRLPEPILRALRGKGIEKPTPIQVQGLPVALSGRDMIGIAFTGSGKTLVFVLPL--I 233

Query: 63  LEKGRARVRMPRT-------LILEPTRELAAQVADNFEKY------GKNYNLTVALLIGG 109
           +   +  + MP         LI+ P+RELA Q  +  E +           +   L IGG
Sbjct: 234 MAALQEEILMPIVPGEGPFGLIVCPSRELARQTHEVIELFLAPLMEAGYPEIRPLLCIGG 293

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +    Q + +++G  +++ TPGR+ D  ++ K+ ++N   L +DEADR++D+GF   I+ 
Sbjct: 294 VDMRTQMEVVKKGVHIVVATPGRLKDLLSKKKMNLDNCRYLTLDEADRLVDLGFEDDIKE 353

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           +       RQTLLFSATM +++Q  +++ L  P  I VN   + A  ++   V    +Y 
Sbjct: 354 VFDHFKAQRQTLLFSATMPEKIQNFAKSALVKP--IIVNVGRAGAANLD---VIQEVEYV 408

Query: 230 KKCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           K+ A +  LL+  Q T    ++FC  K +V  +   L  +G    AIHG  D   R    
Sbjct: 409 KEEARIIYLLECLQKTPPPVLVFCEHKADVDYIQEFLLLKGVEAVAIHGGKDDEERKDAF 468

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +FK     ++VA+D+A++GLDIPD+ HV N+D+P   ENY+HRIGRTGR G+ G A T 
Sbjct: 469 KSFKASEKDVLVATDVASKGLDIPDIQHVINYDMPAEIENYVHRIGRTGRRGKTGVATTF 528

Query: 349 VAKEDIKH--IDAIEKLIEKKVDWLNGDLSSLNPPLE--KIDIAQHNHAR 394
           + K   +   +D  + LIE K   L   L+ L+ P E  K+ IAQ +  +
Sbjct: 529 INKNQTQTTLLDLKQLLIESK-QRLPPILADLDDPQEDDKVAIAQQSGVK 577


>gi|68474769|ref|XP_718592.1| hypothetical protein CaO19.10024 [Candida albicans SC5314]
 gi|68474936|ref|XP_718509.1| hypothetical protein CaO19.2488 [Candida albicans SC5314]
 gi|74627388|sp|Q5A9Z6|FAL1_CANAL RecName: Full=ATP-dependent RNA helicase FAL1
 gi|46440277|gb|EAK99585.1| hypothetical protein CaO19.2488 [Candida albicans SC5314]
 gi|46440366|gb|EAK99673.1| hypothetical protein CaO19.10024 [Candida albicans SC5314]
          Length = 399

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 123/369 (33%), Positives = 201/369 (54%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P ++  +   G+  P+ IQ + I  ++   D    AQ+GTGKTA+F + ML +
Sbjct: 28  FESMNLKPDLLKGIYAYGFETPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEV 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    + +  + LIL PTRELA Q+ +  +  G   N+     IGG       KKL++G
Sbjct: 88  ID---TKSKECQALILSPTRELAIQIQNVVKHLGDYMNIHTHACIGGKNVGEDVKKLQQG 144

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR++D   R  L   NI++L++DEAD +   GF   I  I   +P + Q ++
Sbjct: 145 QQIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYEIYKHLPPSVQVVV 204

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F  +P +I V     +   I+  +V    +   +   C L   L 
Sbjct: 205 VSATLPREVLEMTSKFTTDPVKILVKRDEISLSGIKQYYVQCEREDWKFDTLCDLYDNL- 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K  V  L   ++KQ F+V A+HG++ Q  R  I+++F+ G  +++
Sbjct: 264 ----TITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFRRGNSRVL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A  L+ K+D+  +  
Sbjct: 320 ISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVVTLKE 379

Query: 360 IEKLIEKKV 368
            EK    K+
Sbjct: 380 FEKYYSTKI 388


>gi|308808636|ref|XP_003081628.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
 gi|116060093|emb|CAL56152.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
          Length = 592

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 127/362 (35%), Positives = 203/362 (56%), Gaps = 45/362 (12%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK- 65
           GL  +++ A+   GYVKP+PIQ+ +IP+ L + DV GIA+TG+GKT +FV+PML  + + 
Sbjct: 163 GLPKEILRAIEKVGYVKPSPIQMASIPIGLLKRDVIGIAETGSGKTCAFVVPMLAHIMQL 222

Query: 66  ----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                      P  LI+ PTRELA Q+ +   K+ +  N  VAL++GG   E Q  KL +
Sbjct: 223 PKMTDEIAAHGPYALIMAPTRELAQQIEEETLKFAQFLNYRVALVVGGQSIEDQGFKLRK 282

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT------SLVP 175
           G ++L+ TPGRI+D  +R   +++    +V+DEADRM+DMGF P +  +       +L P
Sbjct: 283 GVEILVGTPGRIIDVIDRRYTVLSQCNYIVLDEADRMIDMGFEPQVNAVMESMGSGNLKP 342

Query: 176 FT---------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA 214
                                  R T +FSATM   +++++ ++L+NP  + + +   T+
Sbjct: 343 EDEAEALDAQALDAGAGVASSKYRTTYMFSATMPPSVERLARSYLRNPAVVNIGSAGKTS 402

Query: 215 ETI--EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN---VVNLCHSLEKQG 269
           + I  E  +VA + + SK      +L+ S+ T    I+F N K++   V NLC+ L   G
Sbjct: 403 DLIKQEVIWVAKHERDSK-----LELVLSRHTNTQAIVFVNAKRSVDAVQNLCYRL---G 454

Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329
           +S  +IHG   Q  R + L  FK G   ++VA+D+A RG+D+ ++  V N+++P+  ENY
Sbjct: 455 YSCASIHGGKSQDQREESLRGFKAGEYDILVATDVAGRGIDVKNIDLVVNYELPHSIENY 514

Query: 330 IH 331
            H
Sbjct: 515 TH 516


>gi|116003979|ref|NP_001070349.1| probable ATP-dependent RNA helicase DDX10 [Bos taurus]
 gi|115305270|gb|AAI23580.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Bos taurus]
 gi|296480316|gb|DAA22431.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Bos taurus]
          Length = 876

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/378 (36%), Positives = 211/378 (55%), Gaps = 24/378 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P+L  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 63  LEKGRARVRMPRT-------LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           L       R+  T       LI+ PTRELA Q  +   K GKN++ +  L+IGG   + +
Sbjct: 131 L------YRLQWTSADGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHE 184

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
            +++    ++L+CTPGR+L H +        N+++LV+DEADR+LDMGF   +  I   +
Sbjct: 185 AERIN-NINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENL 243

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKC 232
           P  RQTLLFSAT T  ++ ++   L+NP+ + V+  +  ST  T+E  ++    Q  +K 
Sbjct: 244 PKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQ--QKI 301

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL--EKQGFSVCAIHGNIDQRSRMKILSN 290
           ++L   L+S    K  I+F +  K V  L       + G S+ A+HG   Q  RM++ + 
Sbjct: 302 SVLYSFLRSH-LKKKSIVFFSSCKEVQYLYRVFCRLRPGVSLLALHGRQQQMRRMEVYNE 360

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F      ++ A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++ 
Sbjct: 361 FVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILL 420

Query: 351 KEDIKHIDAIEKLIEKKV 368
             + K +  +++L++KKV
Sbjct: 421 PSEEKGM--VQQLLQKKV 436


>gi|241948951|ref|XP_002417198.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223640536|emb|CAX44790.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 399

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 123/369 (33%), Positives = 201/369 (54%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P ++  +   G+  P+ IQ + I  ++   D    AQ+GTGKTA+F + ML +
Sbjct: 28  FESMNLKPDLLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEV 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    + +  + LIL PTRELA Q+ +  +  G   N+     IGG       KKL++G
Sbjct: 88  ID---TKSKECQALILSPTRELAIQIQNVVKHLGDYMNIHTHACIGGKNVGDDVKKLQQG 144

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR++D   R  L   NI++L++DEAD +   GF   I  I   +P + Q ++
Sbjct: 145 QQIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYEIYKHLPPSVQVVV 204

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F  +P +I V     +   I+  +V    +   +   C L   L 
Sbjct: 205 VSATLPREVLEMTSKFTTDPVKILVKRDEISLSGIKQFYVQCEREDWKFDTLCDLYDNL- 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K  V  L   ++KQ F+V A+HG++ Q  R  I++ F+ G  +++
Sbjct: 264 ----TITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNEFRRGNSRVL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A  L+ K+D+  +  
Sbjct: 320 ISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVATLKD 379

Query: 360 IEKLIEKKV 368
           +EK    K+
Sbjct: 380 LEKYYSTKI 388


>gi|294877852|ref|XP_002768159.1| eukaryotic translation initiation factor, putative [Perkinsus
           marinus ATCC 50983]
 gi|239870356|gb|EER00877.1| eukaryotic translation initiation factor, putative [Perkinsus
           marinus ATCC 50983]
          Length = 395

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   ++  +   G+ +P+ +Q + I  +++  DV   +Q+GTGKT  F L  L  
Sbjct: 24  FDALGLKEDLLRGIYQYGFERPSAVQQRAILPIVKGRDVVVQSQSGTGKTCVFALGALQT 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++      R P+ LIL PTRELA Q        G   N+ V   +GG       + LE G
Sbjct: 84  VKTTE---RDPQVLILSPTRELAEQSQKVCLALGDYMNVQVHCCVGGKKLTDDIRALEAG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+    ++  L   ++++LV+DEAD MLD GF   + +I   +P + Q +L
Sbjct: 141 VHIVSGTPGRVYHMISQRHLSTRHLKMLVLDEADEMLDRGFKEQVYDIYRYLPPSTQCVL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SATM +E+ +++ NF+ NP R+ V     T E I+  FVA   +   +   C L   L 
Sbjct: 201 VSATMPNEILEMTNNFMNNPFRVLVKRDELTLEGIKQFFVAVEKEQWKFDTLCDLYDTL- 259

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L + + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 260 ----TITQAVIFCNTKQKVDWLTNKMREAKFTVVSMHGDMPQKERDAIMQKFRSGQARVL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+  RGLD+  V  V  +D+PN  E YIHRIGR+GR GR G A   V ++D++ +  
Sbjct: 316 ITTDIWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKEDDVRILRD 375

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 376 IEQYYSTQIDEMPMNVADL 394


>gi|114647100|ref|XP_001152281.1| PREDICTED: ATP-dependent RNA helicase DDX54 isoform 5 [Pan
           troglodytes]
          Length = 884

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/357 (36%), Positives = 197/357 (55%), Gaps = 6/357 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 98  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 158 LKTHSAQT-GARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I + +P   QT+L
Sbjct: 217 PDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVL 276

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLLQ 240
           FSAT+   L + +   L  P  I ++  +   E ++  F  V    + +    LL+ +++
Sbjct: 277 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLRNMVR 336

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     ++F   K +   L   L  Q  S   I+  +D  +R   L+ F  G    ++
Sbjct: 337 PQDQT---VVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLI 393

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA ++I ++
Sbjct: 394 VTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYL 450


>gi|123468442|ref|XP_001317439.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121900173|gb|EAY05216.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 416

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 137/394 (34%), Positives = 220/394 (55%), Gaps = 17/394 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGL   +V A    G+  P PIQIKTIP  +++ D+CG A+TG+GKT +++LP+   
Sbjct: 8   FSDLGLCQPMVDACKSLGWKYPMPIQIKTIPPAIEKKDICGTAETGSGKTGAYMLPIFHH 67

Query: 63  LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + +       P +   L+  PTRELA Q+       GK+  + V  +IGG+  ++Q K L
Sbjct: 68  MWEN------PHSFFALVFAPTRELATQIDHVTRDIGKDIKVRVCTIIGGVDEDSQVKAL 121

Query: 120 ERGADVLICTPGRI--LDHFNRGKLLMNNIEILVIDEADRML-DMGFIPYIQNITSLVPF 176
           +    V++ TPGR+  L   N   + +N +E LV DEAD ML +  F   IQ I S +  
Sbjct: 122 KAQPHVVVATPGRLARLIRNNPKVIPLNKVECLVFDEADNMLREPSFQTDIQLILSKLNS 181

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           T QT LFSATM +E++++++  + +P R+ + + ++ A T+ EH  ++   +  KK A L
Sbjct: 182 THQTYLFSATMPEEIEQLAKQTMSDPVRLSLTSVNTVARTLTEHLVIS---ETGKKEATL 238

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+ +Q   K  IIF    K    +   L    F     HG + QR R+  +  FK G 
Sbjct: 239 VALM-NQYPDKQTIIFVGSCKTATIISTLLSNLNFRTIVYHGQLPQRERINAIDRFKNGD 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            +++VA+++ +RGLD+P V  V N+++P   E YIHR+GR GRA R G A T++   ++ 
Sbjct: 298 YRVLVATNVGSRGLDVPHVDLVINYELPEEHEEYIHRVGRAGRAERSGVAVTIITANEVV 357

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
               +E  ++KK+   +  L  +    EK+++A+
Sbjct: 358 GYIRLENFLKKKIPKKDIPLEKIEEVTEKVELAK 391


>gi|195170555|ref|XP_002026077.1| GL16096 [Drosophila persimilis]
 gi|194110957|gb|EDW33000.1| GL16096 [Drosophila persimilis]
          Length = 554

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 131/387 (33%), Positives = 204/387 (52%), Gaps = 29/387 (7%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--EKGRARVRMPRTLIL 78
           Y +PTPIQ +  P+ L  H++ GIA+TG+GKT +F+LP +  +  ++   R   P  L+L
Sbjct: 123 YSEPTPIQAQAWPIALSGHNLVGIAKTGSGKTLAFILPAILHINGQQPLQRGEGPIALVL 182

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA Q+      +G +  +    + GG P   Q   L+RG +++I TPGR+LD   
Sbjct: 183 APTRELAQQIQSVANDFGSSAFVRNTCVFGGAPRSKQASDLKRGVEIIIATPGRLLDFLQ 242

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
            G   +     LV+DEADRMLDMGF P I+ +   +   RQ L++SAT   E+++++E+F
Sbjct: 243 SGATNLRRCTYLVLDEADRMLDMGFEPQIRKVLGQIRPDRQILMWSATWPKEVRQLAEDF 302

Query: 199 LQNP--------KRIEVNTPSSTAETIEHCFVATY--AQYSKKCA----------LLQQL 238
           L +          RI++ T S+ + +        +   QY + C           LL  +
Sbjct: 303 LGSYIQVSRVQILRIQIETLSARSTSGPWSCRPNHNIRQYVEVCGEHEKSAKLKDLLSHI 362

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     IIF   KK    L   +   G SV +IHG+  Q  R  +L++F+ G   +
Sbjct: 363 YDQAHAPGKIIIFVATKKKTDELARFINAFGVSVGSIHGDKSQMDRDSVLNDFRSGRANI 422

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR    G ++    +++ +   
Sbjct: 423 LVATDVAARGLDVDGIKYVINFDYPQSSEDYIHRIGRTGRKLSKGTSYAFFTRKNARCAR 482

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKI 385
           A+       +D L     ++NP LE +
Sbjct: 483 AL-------IDILREANQNVNPELENL 502


>gi|194897089|ref|XP_001978588.1| GG17597 [Drosophila erecta]
 gi|190650237|gb|EDV47515.1| GG17597 [Drosophila erecta]
          Length = 955

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 208/378 (55%), Gaps = 14/378 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   V+  +   G+ KPT IQ +  P+ L   D+ GIAQTG+GKT +++LP +
Sbjct: 241 VSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAI 300

Query: 61  TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQN 116
             +      +R   P  L+L PTRELA Q+      YG      +    + GG     Q 
Sbjct: 301 VHIGNQPPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQA 360

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+RG +V+I TPGR++D        +     LV+DEADRMLDMGF P I+ I   +  
Sbjct: 361 RDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 420

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKK 231
            RQ +++SAT   E+Q ++ +FL +  +I + + + +A     + +E C      Q  + 
Sbjct: 421 DRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEMEKPQ--RL 478

Query: 232 CALLQQLLQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
             LL ++  ++++  NG   IIF   K  V ++   +  +G++  +IHG+  Q  R  +L
Sbjct: 479 VRLLNEIAPTKNSANNGNKIIIFVETKIKVEDILQIIRTEGYTATSIHGDKTQNERDSVL 538

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +F+ G   +++A+D+A+RGLD+ D+ +V N+D PN +ENY+HRIGRTGR  + G A+T 
Sbjct: 539 KDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTF 598

Query: 349 VAKEDIKHIDAIEKLIEK 366
              ++ K    +  ++E+
Sbjct: 599 FTPDNAKQARELISVLEE 616


>gi|328859802|gb|EGG08910.1| hypothetical protein MELLADRAFT_34708 [Melampsora larici-populina
           98AG31]
          Length = 765

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 135/420 (32%), Positives = 209/420 (49%), Gaps = 48/420 (11%)

Query: 10  PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK--- 65
           P  +  ++D  GY +P+PIQ + IPL L   D+ GIA+TG+GKTASFV+PMLT + K   
Sbjct: 316 PMQILEIIDEVGYKEPSPIQRQAIPLGLNNRDLIGIAETGSGKTASFVIPMLTYIGKLAP 375

Query: 66  --GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
                R   P  LIL PTRELA Q+     K+          ++GG   E Q   +  GA
Sbjct: 376 LTDENRHLGPYALILAPTRELAQQIESETNKFALRLGYRCVSIVGGKAMEEQALNMRDGA 435

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT------ 177
           +++I TPGR+ D   R  L++     +V+DEADRM+++GF   +  I   +P +      
Sbjct: 436 EIIIATPGRLKDCIERHVLVLGQCTYVVMDEADRMINLGFEEVVNFILDQLPLSNLKPDT 495

Query: 178 ----------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNT 209
                                       RQT++FSATM   +++++  +L+ P  + +  
Sbjct: 496 EEAEDSAKMTSFIGGIEGFDVSGIKGLYRQTVMFSATMPPAVERLARKYLRRPAVVTIGV 555

Query: 210 PSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269
                +T++        +  K+  LL+ L  +Q      I+F NQKK    L   + + G
Sbjct: 556 AGQAVDTVDQQVEFLPNEDKKRGRLLEVL--NQGHTPPIIVFVNQKKTADQLAKDISRAG 613

Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329
           +S   +H   +Q  R   L++ + G   ++VA+DLA RG+D+P+V  V NF +    E Y
Sbjct: 614 WSTTTLHSGKNQEQREAALASLRAGESDILVATDLAGRGIDVPNVSLVVNFQMAGTIEAY 673

Query: 330 IHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
           +HRIGRTGRAG+ G A T +  +D   +  +++ I K        +S   P L K + AQ
Sbjct: 674 VHRIGRTGRAGKVGTAITFLTNDDADVLYDLKQEITKS------PVSRCPPELAKHEAAQ 727


>gi|302562189|ref|ZP_07314531.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
 gi|302479807|gb|EFL42900.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
          Length = 451

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 124/347 (35%), Positives = 188/347 (54%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L  +V+  +   G  +P PIQ  T+P  L+  DV G  +TG+GKT +F LP+LT 
Sbjct: 10  FAGLRLPAEVLRTLSALGVREPFPIQAATLPDSLEGRDVLGRGRTGSGKTLAFGLPLLTR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  + P  L+L PTRELA QV  +   Y +   L +  ++GG+    Q   L +G
Sbjct: 70  TAGRRAAPKQPLALVLVPTRELAQQVTQDLAPYAEALRLRMTTVVGGLSIGRQTAALRQG 129

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D   R    + ++ I V+DEAD+M DMGF+P + +    V    Q +L
Sbjct: 130 AEVVVATPGRLHDLIERNACRLGSVRITVLDEADQMCDMGFLPQVTDALDQVHPDGQRML 189

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  ++ K+   +L +P    V+ P+    T+EH  +  +     + A++ ++    
Sbjct: 190 FSATLDRDVDKLVGRYLHDPVVHSVDPPAGAVTTMEHHVLVVHG--PDRYAVVTEIAARD 247

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   ++F + K  V  L   L   G    A+HG   Q  R + L+ FK+G I ++VA+
Sbjct: 248 GRV---LLFLDTKHAVDQLTRHLRASGVPAGALHGGKSQPQRTRTLAQFKDGGITVLVAT 304

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            +AARGL I D+  V N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 305 GVAARGLHIDDLDLVVNVDPPADPKDYVHRAGRTARAGASGSVVTLV 351


>gi|58259181|ref|XP_567003.1| Pre-mRNA splicing factor RNA helicase PRP28 [Cryptococcus
           neoformans var. neoformans JEC21]
 gi|134107275|ref|XP_777522.1| hypothetical protein CNBA6450 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687426|sp|Q5KNF8|PRP28_CRYNE RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|50260216|gb|EAL22875.1| hypothetical protein CNBA6450 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223140|gb|AAW41184.1| Pre-mRNA splicing factor RNA helicase PRP28, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 738

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/419 (31%), Positives = 216/419 (51%), Gaps = 38/419 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ +  +  +++  + + GY +P+PIQ + IP+ +Q  D+ G+A+TG+GKTA+FV+PML 
Sbjct: 316 NWRESAIPSQILDIIEEIGYKEPSPIQRQAIPIGMQNRDLIGVAKTGSGKTAAFVIPMLD 375

Query: 62  ILE-----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +          R   P  LI+ PTRELA Q+     ++          ++GG   E Q 
Sbjct: 376 YIGHLPPLNDDNRHLGPYALIMAPTRELAQQIETETRRFALPLGYKCVSIVGGRSVEEQQ 435

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GA+++I TPGR+ D  ++  L+M+    +V+DEADRM+D+GF   +  I   +P 
Sbjct: 436 FALRDGAEIIIATPGRLKDMVDKSILVMSQCRYVVMDEADRMVDLGFEVDLNFILDSMPA 495

Query: 177 T---------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
           T                     R T LFSATM   +++++  +L  P  + +       +
Sbjct: 496 TFVKPDDSVALQPTKEGEWQGWRVTTLFSATMPPAVERLARKYLIKPATVVIGNAGEAVD 555

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
           T+E      +    KK  L++ +L++       I+F NQKK    +   +++ G S   +
Sbjct: 556 TVEQRVEFVHGDEKKKARLIE-ILRTIGLPPPIIVFVNQKKTADMVVKYVQQAGMSGVTL 614

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           H    Q  R   L   ++G I ++VA+DLA RG+D+PDV  V N+ + +  E Y+HRIGR
Sbjct: 615 HSGKSQEQREAALQALRDGEISVLVATDLAGRGIDVPDVSLVINWQMSDTIEKYVHRIGR 674

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           TGRAG+ G A T +  +D + +  +   +EK        +S +NP     ++A+H  AR
Sbjct: 675 TGRAGKTGVAITFLTNDDDEVMYDLRIEVEKS------KMSKMNP-----ELARHEAAR 722


>gi|307110624|gb|EFN58860.1| hypothetical protein CHLNCDRAFT_48551 [Chlorella variabilis]
          Length = 407

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 134/351 (38%), Positives = 200/351 (56%), Gaps = 10/351 (2%)

Query: 23  KPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTR 82
           +PT +Q  TIP VL   +V G+A TG+GKTA+F LP+L  L K    V     L+L PTR
Sbjct: 3   EPTQVQRGTIPAVLAGRNVIGVAHTGSGKTAAFALPILQKLAKNPFGVF---ALVLTPTR 59

Query: 83  ELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR-GK 141
           ELA Q+AD F   G   +L   +++GG+   AQ K+L R   V+I TPGR+       G+
Sbjct: 60  ELAFQLADQFRALGTGMSLKDCVVVGGLDMTAQAKELARRPHVVIATPGRLRGLLQLDGE 119

Query: 142 L--LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
           L  +      LV+DEADR+L+  F   +  +   +P  RQTLLFSATMT  L ++ +  L
Sbjct: 120 LARVFGRARFLVLDEADRLLEPSFESELAVVLGALPERRQTLLFSATMTQTLVELQKQLL 179

Query: 200 QNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
           ++    +      TA  +  E+ F+    +      LL QL + Q   ++ IIF    K 
Sbjct: 180 RDAYHFQAYEGLQTAAKLRQEYLFLPAKVKEVYLVHLLGQLEELQ--CRSAIIFAGTCKG 237

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
              L   LE+ G +  A+H +  QR+R++ L  FK G++ +++A+D+A+RGLDIP V  V
Sbjct: 238 CHLLSLLLEELGIAAAALHSHKPQRARLEALHRFKSGSVPILLATDVASRGLDIPSVDLV 297

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            N+D+P  A +Y+HR+GRT RAGR G + + V + DI  +  IE L+ +++
Sbjct: 298 VNYDLPQMARDYVHRVGRTARAGRRGWSLSFVTQYDIDLVQQIEVLVGQQL 348


>gi|6468270|emb|CAB61567.1| ATP-dependent RNA helicase [Candida albicans]
          Length = 399

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 123/369 (33%), Positives = 201/369 (54%), Gaps = 11/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P ++  +   G+  P+ IQ + I  ++   D    AQ+GTGKTA+F + ML +
Sbjct: 28  FESMNLKPDLLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEV 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    + +  + LIL PTRELA Q+ +     G   N+     IGG       KKL++G
Sbjct: 88  ID---TKSKECQALILSPTRELAIQIQNVVMHLGDYMNIHTHACIGGKNVGEDVKKLQQG 144

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR++D   R  L   NI++L++DEAD +   GF   I  I   +P + Q ++
Sbjct: 145 QQIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYEIYKHLPPSVQVVV 204

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F  +P +I V     +   I+  +V    +   +   C L   L 
Sbjct: 205 VSATLPREVLEMTSKFTTDPVKILVKRDEISLSGIKQYYVQCEREDWKFDTLCDLYDNL- 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K  V  L   ++KQ F+V A+HG++ Q  R  I+++F+ G  +++
Sbjct: 264 ----TITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFRRGNSRVL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A  L+ K+D+  +  
Sbjct: 320 ISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVVTLKE 379

Query: 360 IEKLIEKKV 368
           +EK    K+
Sbjct: 380 LEKYYSTKI 388


>gi|322503130|emb|CBZ38214.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 917

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 129/360 (35%), Positives = 197/360 (54%), Gaps = 27/360 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFADL + P +   +   GY KPTP+Q   IP+ L   D+   AQTG+GKTA+F++P++ 
Sbjct: 466 DFADLLVEPALAANIERCGYKKPTPVQRYGIPVALSGSDLMACAQTGSGKTAAFLIPVVQ 525

Query: 62  IL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +        R R   P  L+L PTRELA Q+ D   K   N ++   ++ GG  +    
Sbjct: 526 YMLVHGVSPARQRKSYPIALVLAPTRELAVQIFDEVRKLTFNTDIFYDVVYGGTRYP--- 582

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--- 173
           ++ E+  D+L+  PGR+ D FN   L  + I+ L++DEADRML+MGF   I+ + +    
Sbjct: 583 QRFEQ--DILVACPGRLRDMFNEEYLSFSAIKFLILDEADRMLEMGFEEQIEELVASRYT 640

Query: 174 -VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEV-----NTPSSTAETIEHCFVATY 225
            +P    RQT +FSAT    +  +++ +L+    +       +T  +  +TIEH      
Sbjct: 641 DMPTVDERQTFMFSATFPQRILNLAKRYLRRKYYLLTVGRVGSTTKNITQTIEHV----- 695

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
              ++K   L Q++   +     +IF   KK   ++   L ++G S   IHG+  Q+ R 
Sbjct: 696 -PDNEKMDRLLQIIYGHEMSDMVLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDRE 754

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L +FK+    ++VA+D+A+RGLDIPDV HV  FD+P   ++Y HRIGRTGRAG  G A
Sbjct: 755 AALEDFKQKVTPILVATDVASRGLDIPDVAHVVQFDLPQEMDDYTHRIGRTGRAGNKGIA 814


>gi|158293651|ref|XP_315003.3| AGAP004912-PB [Anopheles gambiae str. PEST]
 gi|157016550|gb|EAA10492.4| AGAP004912-PB [Anopheles gambiae str. PEST]
          Length = 705

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 131/382 (34%), Positives = 211/382 (55%), Gaps = 11/382 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + G    ++       + +PT IQ     + +   D+ GIA+TG+GKT +++LP L
Sbjct: 104 MHFHESGFPQYMLDEFQRQAFKEPTFIQAVGWSIAMSGRDMVGIAKTGSGKTLAYILPAL 163

Query: 61  T-ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             I  + R AR   P  L+L PTRELA Q+    + +G+   +    + GG     Q   
Sbjct: 164 VHISNQPRIARGDGPIALVLAPTRELAQQIKQVCDDFGRRMGIYNTCVFGGASKYPQESD 223

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG +++I TPGR++D   R    +     LV+DEADRMLDMGF P I+ I S +   R
Sbjct: 224 LRRGVEIVIATPGRLIDFLERETTNLRRCTYLVLDEADRMLDMGFEPQIRKIISQIRPDR 283

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCA 233
           Q L++SAT   E++K++E FL++  +I + + +  A     + I+ C    Y + ++   
Sbjct: 284 QVLMWSATWPKEIRKLAEEFLRDYIQINIGSLNLAANENILQIIDCC--EEYEKENRLFK 341

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL+Q + SQ+  K  IIF   K+ V  + + + +QG+    IHG+  Q+ R  +L+ F+ 
Sbjct: 342 LLEQ-ISSQNDGKT-IIFVETKRKVDKIVNVIRRQGWRADGIHGDKSQKDRDYVLNTFRR 399

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            T  ++VA+D+A+RGLD+ DV  V NFD PN  E+Y+HRIGRTGR+   G ++T     +
Sbjct: 400 STNGILVATDVASRGLDVDDVKFVINFDFPNNTEDYVHRIGRTGRSTNKGTSYTFFTPAN 459

Query: 354 IKHIDAIEKLIEKKVDWLNGDL 375
                 +  +++    ++N +L
Sbjct: 460 SSKAPDLITVLQDANQYINPEL 481


>gi|225682788|gb|EEH21072.1| pre-mRNA-processing ATP-dependent RNA helicase prp5
           [Paracoccidioides brasiliensis Pb03]
          Length = 1203

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 131/373 (35%), Positives = 204/373 (54%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  + +  +    Y  PT IQ + IP ++   DV G+A+TG+GKT +F+LPM   
Sbjct: 580 WSQCGLGVQTLDVIRKLNYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRH 639

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++  R    M  P  LI+ PTRELA Q+    + + K  NL      GG P + Q  +L+
Sbjct: 640 IKDQRPLENMEGPIGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELK 699

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   V   
Sbjct: 700 RGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNVRPQ 759

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT    ++ ++   L  P  I V   S  A  I    V    + +K   LL  
Sbjct: 760 RQTVLFSATFPRNMEALARKTLTKPVEIVVGGRSVVAPEITQ-IVEVRNEDTKFVRLLAL 818

Query: 238 L--LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L  L + D  ++   +IF ++++    L   L  +G+   +IHG  DQ  R   +++FK 
Sbjct: 819 LGDLYADDNNEDARTLIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIADFKA 878

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + +  
Sbjct: 879 GVFPILIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEVQ 938

Query: 354 IKHIDAIEKLIEK 366
            ++   I K +++
Sbjct: 939 ERYSVDISKALKQ 951


>gi|149246473|ref|XP_001527693.1| hypothetical protein LELG_00213 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152013477|sp|A5DS77|DBP2_LODEL RecName: Full=ATP-dependent RNA helicase DBP2
 gi|146447647|gb|EDK42035.1| hypothetical protein LELG_00213 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 552

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 118/338 (34%), Positives = 187/338 (55%), Gaps = 11/338 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  + + G+ KPT IQ +  P+ L   D+ GIA TG+GKT S+ LP +  
Sbjct: 118 FDEAGFPDYVLNELKNQGFPKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVH 177

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L++G      P  L+L PTRELA Q+     K+G +  +    + GG P   Q 
Sbjct: 178 INAQPLLKRGDG----PIVLVLAPTRELACQIQTECSKFGASSRIRNTCVYGGAPKGPQI 233

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  G ++ I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 234 RDLANGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 293

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E+Q ++ ++L NP ++ + +    A       V    +Y K+  L++
Sbjct: 294 DRQTLMWSATWPKEVQNLARDYLDNPIQVTIGSLELAASHTITQIVQVVTEYQKRDLLVK 353

Query: 237 QLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L  +  D+    ++F + K+    +   L   G+   AIHG+ +Q  R  +L  F++G+
Sbjct: 354 HLESALADSNSKVLVFASTKRTCDEVTSYLRADGWPALAIHGDKEQHERDWVLKEFRQGS 413

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
             +MVA+D+AARG+D+  + HV N+D+P   E+Y+HRI
Sbjct: 414 HSIMVATDVAARGIDVKGITHVVNYDMPGNIEDYVHRI 451


>gi|320163598|gb|EFW40497.1| ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 1198

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/361 (36%), Positives = 201/361 (55%), Gaps = 13/361 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  +  A+   GY  PTPIQ KT+PL+L+  DV  +A+TG+GKTA+F++P+L  
Sbjct: 259 FQSLGLSYNIFRAIGKKGYKVPTPIQRKTMPLLLEGKDVVAMARTGSGKTAAFLVPLLEK 318

Query: 63  LEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L+       +P    R LIL PTRELA Q            NL   L++GG   E Q   
Sbjct: 319 LQS-----HVPGTGCRALILSPTRELAMQTHKFCNDLSSFTNLRTRLIVGGESLEQQFAA 373

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +    D++I TPGR L       L +  ++ +V DEADR+ +MGF   +  + + +P  R
Sbjct: 374 MHENPDIVIATPGRFLHVVMEMNLRLQAVQYVVFDEADRLFEMGFAEQLSELLARLPEGR 433

Query: 179 QTLLFSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           QT LFSAT+   L   +   LQ+P   R++V+T  S   ++ H  V    +      +L 
Sbjct: 434 QTCLFSATLPRMLVDFARAGLQDPVLVRLDVDTKISENLSLAHFIVRKDEKIGALIHVLT 493

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L+ +  T +  I+F   + +V  +   L   G SV +I+G++DQ +R   L+ F+    
Sbjct: 494 NLINT--TTEQSIVFVATRHHVEFISLILTSFGLSVASIYGSMDQAARKINLAKFRLNKA 551

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +MV +D+AARG+DIP + +V N+D P + + +IHR+GR  RAGR G A++LV  +++ +
Sbjct: 552 SVMVVTDVAARGIDIPLLNNVINYDFPAKPKLFIHRVGRAARAGRTGVAYSLVQPDELPY 611

Query: 357 I 357
           +
Sbjct: 612 V 612


>gi|168828898|gb|ACA33927.1| vasa [Salvelinus leucomaenis]
          Length = 662

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 144/431 (33%), Positives = 225/431 (52%), Gaps = 35/431 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GY KPTP+Q   IP++    D+   AQTG+GKT +F+LP+L
Sbjct: 226 MGFEEAALCESLNRNVSKSGYKKPTPVQKHGIPIIAAGRDLMACAQTGSGKTVAFLLPIL 285

Query: 61  T-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G A      V+ P  +I+ PTREL  Q+     K+     +   ++ GGI    
Sbjct: 286 QQLMVDGVAASKFSEVQEPEVIIVAPTRELINQIYMEARKFAHGTCVRPVVVYGGISTGH 345

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +++ +G +VL  TPGR++D   RGK+ ++ +  LV+DEADRMLDMGF P ++N+    
Sbjct: 346 TIREILKGCNVLCGTPGRLMDIIGRGKIGLSKLRYLVLDEADRMLDMGFEPAMRNVVGSP 405

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +++QK++ +FL+     + V         +E   V    ++S
Sbjct: 406 GMPAKEDRQTLMFSATYPEDIQKLAGDFLKKDYLFLAVGVVGGACSDVEQVVVQV-TKFS 464

Query: 230 KKCALLQQL--LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
           K+  LL+ L    S+ TM    +F   K+    +   L ++  +  +IHG+ +QR R + 
Sbjct: 465 KRDQLLEVLKTTGSERTM----VFVETKRQADFIATFLCQEKVNTTSIHGDREQREREQA 520

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L +F+ G   ++VA+ +AARGLDI DV H+ NFD+PN  + Y+HRIGRTGR G  G+A  
Sbjct: 521 LGDFRSGKCPVLVATSVAARGLDIKDVQHIVNFDLPNNIDEYVHRIGRTGRCGNTGRAVC 580

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
               E      A   L    V  L+G    +   LE+   + H            +TGF+
Sbjct: 581 FFDPE------ADSNLARSLVKVLSGAQQEVPKWLEEAAFSAHG-----------TTGFN 623

Query: 408 RRKKNYSSQKS 418
              + ++S  S
Sbjct: 624 PGGRIFASTDS 634


>gi|75321947|sp|Q5Z6G5|RH35B_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 35B
 gi|53793229|dbj|BAD54454.1| putative DEAD-box protein abstrakt [Oryza sativa Japonica Group]
 gi|125598365|gb|EAZ38145.1| hypothetical protein OsJ_22496 [Oryza sativa Japonica Group]
          Length = 619

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 146/410 (35%), Positives = 223/410 (54%), Gaps = 26/410 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L   ++ A+   G  KPTPIQ++ +P+ L   D+ GIA TG+GKT  FVLP+  I
Sbjct: 175 FGDLRLPEPILRALRGKGIEKPTPIQVQGLPVALSGRDMIGIAFTGSGKTLVFVLPL--I 232

Query: 63  LEKGRARVRMPRT-------LILEPTRELAAQVADNFEKY------GKNYNLTVALLIGG 109
           +   +  + MP         LI+ P+RELA Q  +  E +           +   L IGG
Sbjct: 233 MAALQEEILMPIVPGEGPFGLIVCPSRELARQTHEVIEMFLAPLMEAGYPEIRPLLCIGG 292

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +    Q + +++G  +++ TPGR+ D  ++ K+ ++N   L +DEADR++D+GF   I+ 
Sbjct: 293 VDMRTQMEVVKKGVHIVVATPGRLKDLLSKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 352

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           +       RQTLLFSATM +++Q  +++ L  P  I VN   + A  ++   V    +Y 
Sbjct: 353 VFDHFKAQRQTLLFSATMPEKIQNFAKSALVKP--IIVNVGRAGAANLD---VIQEVEYV 407

Query: 230 KKCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           K+ A +  LL+  Q T    ++FC  K +V  +   L  +G    AIHG  D   R    
Sbjct: 408 KEEARIIYLLECLQKTPPPVLVFCEHKADVDYIQEFLLLKGVEAVAIHGGKDDEERKDAF 467

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +FK     ++VA+D+A++GLDIPD+ HV N+D+P   ENY+HRIGRTGR G+ G A T 
Sbjct: 468 KSFKASEKDVLVATDVASKGLDIPDIQHVINYDMPAEIENYVHRIGRTGRRGKTGVATTF 527

Query: 349 VAKEDIKH--IDAIEKLIEKKVDWLNGDLSSLNPPLE--KIDIAQHNHAR 394
           + K   +   +D  + LIE K   L   L+ L+ P E  K+ IAQ +  +
Sbjct: 528 INKNQTETTLLDLKQLLIESK-QRLPPILADLDDPQEDDKVAIAQQSGVK 576


>gi|319955548|ref|YP_004166815.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM
           14237]
 gi|319424208|gb|ADV51317.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM
           14237]
          Length = 446

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 127/366 (34%), Positives = 215/366 (58%), Gaps = 16/366 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F+ LG++     ++ D     PT IQ+KTIPLVL  + D+  +A+TGTGKTA+F LP+L 
Sbjct: 5   FSKLGVNEVFQKSLADLEITTPTDIQVKTIPLVLTAKKDIVALAKTGTGKTAAFGLPLLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120
           ++      +++   +IL PTREL  Q+  N   + K +  + +A + GG P + Q +KL+
Sbjct: 65  LVNTKNNDIQV---VILAPTRELGQQIYANLVSFAKYSPAIVIASICGGTPIKPQIEKLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM---LDMGFIPYIQNITSLVPFT 177
               V++ TPGR++D   +  + + N   LV+DEAD M   L     P ++ +    P  
Sbjct: 122 SATHVVVATPGRLVDLIQQKAINIKNTSYLVLDEADEMVTALKQDLDPIVKEL----PEE 177

Query: 178 RQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           R+TLLF+ATM   ++++ +N+L +N   +E +  +   + IEH ++    +  +K  +L 
Sbjct: 178 RRTLLFTATMPGAIKQLVQNYLNKNVMHLEADMDTIGHQGIEHQYIV--VEPIEKLDVLL 235

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L S++  + GIIFC  K  V  L  +L    FS  A+HG++ Q  R +++  F+EG +
Sbjct: 236 HFLSSREG-EQGIIFCKTKAAVNKLAKNLAINKFSSGALHGSLTQVIRDRVMGQFREGQL 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+DLA+RG+D+ D+ +V N+ +P   + Y+HR GRT RAG +G + T++ +E++  
Sbjct: 295 KILVATDLASRGIDVKDISYVVNYHLPETYDLYVHRSGRTARAGANGLSITILQQEEVAD 354

Query: 357 IDAIEK 362
           I   EK
Sbjct: 355 IPVFEK 360


>gi|303390338|ref|XP_003073400.1| DEAD box RNA helicase-like protein [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303302546|gb|ADM12040.1| DEAD box RNA helicase-like protein [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 493

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 125/346 (36%), Positives = 193/346 (55%), Gaps = 18/346 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + G   ++V  +   G+  PTPIQ +  P+ L   D+ GIAQTG+GKT SF+LP L  
Sbjct: 89  FEEAGFPSRIVEELEGKGFSGPTPIQAQGWPMALSGRDMVGIAQTGSGKTLSFILPGLVH 148

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  +   R   P  L+L PTREL  Q+    +++   + L    + GG   + Q K L 
Sbjct: 149 AKDQQPLRRGDGPIALVLAPTRELVMQIKKVADEFCGMFGLRSTAVYGGASSQPQIKALH 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G +++I TPGR++D   +G   ++ +  LV+DEADRMLDMGF P ++ I       RQT
Sbjct: 209 EGVEIVIATPGRLIDLHEQGHAPLSRVTFLVLDEADRMLDMGFEPQLRKIIPKTNGNRQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRI-----EVNTPSSTAETIEHCFVATYAQYSKKCALL 235
           L++SAT   E++ ++E+++ +  ++     E+ T S   + IE C     +   K+  LL
Sbjct: 269 LMWSATWPREVRGLAESYMNDYIQVVVGNEELKTNSKIKQVIEVC-----SGREKEDKLL 323

Query: 236 QQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
             L    D  K    I+FCN K+   +L + L + G+   A+HG+  Q  R K+L +F+ 
Sbjct: 324 GVL----DKFKGDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRS 379

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
           G   +++A+++A RGLD+ DV  V NFD P   E+Y+HRIGRT R 
Sbjct: 380 GRRPILIATEVAGRGLDVNDVKLVINFDFPGTCEDYVHRIGRTARG 425


>gi|195169451|ref|XP_002025535.1| GL15249 [Drosophila persimilis]
 gi|194109014|gb|EDW31057.1| GL15249 [Drosophila persimilis]
          Length = 688

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 125/359 (34%), Positives = 201/359 (55%), Gaps = 14/359 (3%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM--PRTLI 77
           G+ KPT IQ +  P+ L   D+ GIAQTG+GKT +++LP +  + K    +R   P  L+
Sbjct: 5   GFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIGKQPPILRGEGPIALV 64

Query: 78  LEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           L PTRELA Q+      YG      +    + GG     Q + LERG +V+I TPGR++D
Sbjct: 65  LAPTRELAQQIQSVVRDYGHLCQPEIRHTCIFGGSSKVPQARDLERGVEVIIATPGRLID 124

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
                   +     LV+DEADRMLDMGF P I+ I   +   RQ +++SAT   E+Q ++
Sbjct: 125 FLENRNTNLARCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVMWSATWPKEVQALA 184

Query: 196 ENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG-- 248
            +FL +  +I + + + +A     + +E C      Q  +   LL+++  + ++  NG  
Sbjct: 185 GDFLNDYIQINIGSMNLSANHNIRQIVEICTEMEKPQ--RMVRLLKEIAPTNNSANNGSK 242

Query: 249 -IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            IIF   K  V ++   +  +G+   +IHG+  Q  R  +L +F+ G   +++A+D+A+R
Sbjct: 243 IIIFVETKIKVEDILQIIRTEGYIATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASR 302

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           GLD+ D+ +V N+D PN +ENY+HRIGRTGR  + G A+T    ++ K    +  ++E+
Sbjct: 303 GLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQARELISVLEE 361


>gi|62638007|gb|AAX92639.1| Vasa protein [Monopterus albus]
          Length = 450

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 127/344 (36%), Positives = 200/344 (58%), Gaps = 14/344 (4%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRA-----R 69
           V  +GYVKPTP+Q   IP++    D+   AQTG+GKTASF+LP+L  ++  G A      
Sbjct: 39  VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTASFLLPILQQLMVDGVAASCFSE 98

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           ++ P  +I+ PTREL  Q+     K+     +   ++ GG+    Q +++ +G +VL  T
Sbjct: 99  LQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGYQIREILKGCNVLCGT 158

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR+LD   R K+ ++ +  LV+DEADRMLDMGF P ++ +            QTL+FSA
Sbjct: 159 PGRLLDMIGRAKVGLSKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPPKENHQTLMFSA 218

Query: 186 TMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +++Q+++ +FL+     + V         +E  FV    ++SK+  LL+  L++  T
Sbjct: 219 TFPEDIQRMAADFLKTDYLFLAVGVVGGACTDVEQTFVQV-TKFSKRDQLLE-FLKTTGT 276

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   K+    +   L ++     +IHG+ +Q  R K L++F+ G   ++VA+ +
Sbjct: 277 ERT-MVFVETKRQADFIALFLCQEKVPTTSIHGDREQPEREKALADFRSGKCPVLVATSV 335

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           AARGLDIPDV HV NFD+PN  + Y+HRIGRTGR G  G+A + 
Sbjct: 336 AARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNIGRAVSF 379


>gi|303286199|ref|XP_003062389.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455906|gb|EEH53208.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 663

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 135/352 (38%), Positives = 188/352 (53%), Gaps = 24/352 (6%)

Query: 21  YVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLTILEKGRARV--------R 71
           Y  PTPIQ   IP+ L  ++D+   AQTG+GKT  F+LP++  L  G             
Sbjct: 161 YASPTPIQAHAIPIALDAKNDLMCCAQTGSGKTCGFLLPVIAKLGTGATTTPEGAAERAA 220

Query: 72  MPRTLILEPTRELAAQV-------ADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
            P  L++ PTRELA Q+       A +         L   ++ GG   +AQ ++L  G D
Sbjct: 221 TPAALVMAPTRELAIQIHVEARRLAFDPAAMTSATALRAVVVYGGADAKAQLRELALGVD 280

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---SLVP-FTRQT 180
           VL+ TPGR+ D  +RG + +  ++ L++DEADRMLDMGF P I+ I     + P   RQT
Sbjct: 281 VLVATPGRLTDFVDRGVVSLARVKHLILDEADRMLDMGFEPQIRKIVLQRDMPPKHARQT 340

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT  D +QK++  FL++   I V    ST   I   F         K  LL   L 
Sbjct: 341 LMFSATFPDSIQKLAREFLRDYTWIGVGRVGSTVNAIAQHFELATCDKRHKLDLLIAALA 400

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQ-GFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   ++F  +K+    +   L KQ G    +IHG+  Q  R   L++FK G   +M
Sbjct: 401 KAPPPALTLVFVQKKRTAAWVAGQLSKQHGVRAESIHGDRTQSQREAALASFKSGKAPVM 460

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAEN---YIHRIGRTGRAGRHGKAFTL 348
           VA+D+AARG+D+P V HV NFD+P  A++   Y+HRIGRTGRAGR G A + 
Sbjct: 461 VATDVAARGIDVPGVAHVVNFDLPTAADDFDSYVHRIGRTGRAGREGMATSF 512


>gi|167465104|ref|ZP_02330193.1| DEAD/DEAH box helicase domain protein [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 376

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 110/281 (39%), Positives = 172/281 (61%), Gaps = 3/281 (1%)

Query: 88  VADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNI 147
           +A+   K G+   +    + GG     Q + L++   ++I TPGR+LDH NR  + +  +
Sbjct: 1   MAEEISKLGRFKGIRSLPIYGGQDIVKQIRALKKKPQIIIGTPGRLLDHINRKTIKLEGV 60

Query: 148 EILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV 207
           E +V+DEAD MLDMGF+  IQ+I S VP  R T+LFSATM   +QK++  FL+NP+ + V
Sbjct: 61  ETVVLDEADEMLDMGFMDDIQSILSQVPEERHTMLFSATMPPNIQKLAHQFLRNPQHVSV 120

Query: 208 NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
                +A  I   ++  + +  +K   L +LL   +  +  IIF   K+ V  L  +L+K
Sbjct: 121 IPKQVSAPLIAQAYIEVHEK--QKFEALSRLL-DMEAPELAIIFGRTKRRVDELSEALQK 177

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
           +G++   +HG++ Q  R  ++  F++G+I ++VA+D+AARGLD+  V HV NFD+P   E
Sbjct: 178 RGYAAEGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARGLDVSGVSHVINFDLPQDPE 237

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           +Y+HRIGRTGRAG+ G A+T V   +I H+  IEK+   K+
Sbjct: 238 SYVHRIGRTGRAGKEGTAWTFVTPREIDHLHFIEKVTRHKI 278


>gi|167539739|ref|XP_001741236.1| ATP-dependent rRNA helicase RRP3 [Entamoeba dispar SAW760]
 gi|165894254|gb|EDR22313.1| ATP-dependent rRNA helicase RRP3, putative [Entamoeba dispar
           SAW760]
          Length = 406

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 139/374 (37%), Positives = 210/374 (56%), Gaps = 26/374 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL P+V+  V   GY KPT I  K                + +GKTASF+LPM+  
Sbjct: 11  FKDLGLIPEVLKVVEYLGYKKPTKISRKFY--------------SRSGKTASFLLPMIQH 56

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L   + + R    +I+EPTRELAAQV +  ++ GK    L   LL+GG+    Q+ +L +
Sbjct: 57  LLNVKEKNRAFYCIIIEPTRELAAQVVEVLDEIGKALPGLMSCLLVGGMDVMKQSVQLAK 116

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIE---ILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              V++ TPGRI+ H    K +  +I+    LVIDEAD++L+M F   I  +   +P  R
Sbjct: 117 RPHVIVGTPGRIVYHIKNTKGVEESIQKVKFLVIDEADKLLEMDFANEIDYLIEKLPSQR 176

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRI-EVNTPSSTAETI--EHCFVATYAQYSKKCALL 235
            T+LFSATM+ +++K+    L +P +I E      T +T+  E+CF+     +  +   L
Sbjct: 177 TTMLFSATMSTKVEKLQRASLTHPVKIKEEEQKYQTVDTLRQEYCFIP----FKYRDGYL 232

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +L+  +  K+ IIF  +      L   L + G++   +HG + Q+ R+  L  FK G 
Sbjct: 233 LSILKETEG-KSIIIFTMKCSGCTKLVMMLRQLGYAAIPLHGKMSQQKRLIALEKFKSGK 291

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+D+A+RGLDIP+V  V N+D P   ++YIHR+GRT RAG+ G A TLV +  I+
Sbjct: 292 RGILVATDVASRGLDIPNVDIVINYDCPLEPKDYIHRVGRTARAGKSGYAITLVTQYSIE 351

Query: 356 HIDAIEKLIEKKVD 369
               IE +IEKK++
Sbjct: 352 LYQRIETMIEKKLN 365


>gi|325184962|emb|CCA19454.1| DEAD box ATPdependent RNA helicase putative [Albugo laibachii Nc14]
          Length = 399

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 199/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I   +Q  DV   +Q+GTGKTA F    ++I
Sbjct: 28  FESMGLKEDLLRGIYAYGFEKPSAIQQRAIKPAVQGRDVIAQSQSGTGKTAVF---SISI 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   +     + L++ PTRELA Q        G   N+     IGG       ++L+ G
Sbjct: 85  LQTINSTSNETQALVISPTRELAEQTQKVMLALGDYMNVQCHACIGGKSMGEDMRRLDYG 144

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGRI D   R  L    I++LVIDEAD ML+ GF   I +I   +P + Q L+
Sbjct: 145 VQVVSGTPGRIFDMIRRRHLRTRTIKLLVIDEADEMLNKGFKDQIYDIYRYLPPSTQVLV 204

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SATM  ++  ++  F+  P ++ V     T E I+  FVA   +   +   C L   L 
Sbjct: 205 VSATMPQDVLDLTTKFMNEPVKVLVKRDELTLEGIKQFFVAVEQEEWKFDTLCDLYDTL- 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ QR R  I+  F+ G  +++
Sbjct: 264 ----TITQAVIFCNTKRKVDWLTTKMREANFTVSSMHGDMPQRERDTIMQEFRSGGSRVL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+  RGLD+  V  V  +D+PN  E YIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 320 ITTDIWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKDEDVRILRD 379

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 380 IEQYYSTQIDEMPMNIADL 398


>gi|307204940|gb|EFN83479.1| Probable ATP-dependent RNA helicase DDX43 [Harpegnathos saltator]
          Length = 633

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 124/381 (32%), Positives = 207/381 (54%), Gaps = 13/381 (3%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE---KG 66
           P ++  +   G+ KP+PIQ +  P++L   D+ GIAQTGTGKT +F+LP L  ++     
Sbjct: 233 PDILEEIRKQGFQKPSPIQCQAWPILLSGQDLIGIAQTGTGKTLAFLLPALIHIDGQSTP 292

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R+  + P  L++ PTRELA Q+     KY   + +    + GG   + Q   + +G  ++
Sbjct: 293 RSERKGPNVLVMAPTRELALQIEKEVGKYSY-HGIKAVCVYGGGNRKEQINIVTKGVQIV 351

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      L + ++  L++DEADRMLDMGF P I+     V   RQT++ SAT
Sbjct: 352 IATPGRLNDLVQAKVLDVTSVTYLILDEADRMLDMGFEPQIRKTLLDVRSDRQTVMTSAT 411

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY----SKKCALLQQLLQSQ 242
               ++++++++++NP ++ V +    A         T   Y     +K  ++    +  
Sbjct: 412 WPQGVRRLAQSYMKNPIQVFVGSLDLVA-----VHTVTQRVYLIDEEEKNNMMFDFFREM 466

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F  +K  V ++   L   G    +IHG+ DQ  R + L + K G + +++A+
Sbjct: 467 GVNDKVIVFFGKKAMVDHVASDLAVAGIECQSIHGDRDQCDREQALEDMKTGNVHILLAT 526

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G++ T + ++D  H   +  
Sbjct: 527 DVASRGLDIEDITHVLNYDFPRDIEEYVHRVGRTGRAGRTGESITFMTRKDWSHAQQLIN 586

Query: 363 LIEKKVDWLNGDLSSLNPPLE 383
           ++E+    + G+L  +    E
Sbjct: 587 ILEEAHQEVPGELYKMAERYE 607


>gi|145297702|ref|YP_001140543.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850474|gb|ABO88795.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 406

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 129/345 (37%), Positives = 190/345 (55%), Gaps = 6/345 (1%)

Query: 24  PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRE 83
           PT IQ   IP+VL   D+  +AQTG+GKT +F LP+L  L+   + V+    L++ PTRE
Sbjct: 23  PTRIQQLAIPVVLAGQDLLALAQTGSGKTLAFGLPLLQRLDPASSLVQ---GLVVVPTRE 79

Query: 84  LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           LA QV+   +       L +  L GG+  E Q  +L  G  +L+ TPGR+ D   +  L 
Sbjct: 80  LAMQVSAALQGMADALGLRILTLCGGVAQERQQAELALGPQLLVATPGRLRDLLTQQVLG 139

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203
           ++ ++ LV+DEADR+L+MGF P IQ + + +P  RQTLLFSAT+  EL   + + L  P 
Sbjct: 140 LDGLQQLVLDEADRLLEMGFWPDIQWLMNEMPAERQTLLFSATLPAELNAFAHSLLTEPT 199

Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
           RIE N  +S    IE          S K   L  LL+ Q      ++F + + +   +  
Sbjct: 200 RIEANPLNSLVNEIEERLY--LVNKSSKVPALISLLKEQ-AWPQVLVFISARDDADGVAR 256

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
            L + G  V A+HG  +Q  R + L +FK G + ++VA+DL ARG+ +  +  V N D+P
Sbjct: 257 KLARAGIPVAALHGEKEQAVREQALDDFKAGKVLVLVATDLMARGIHVEALPVVINLDLP 316

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
             A  Y+HRIGRT RAG  G A +LV   +   + AI  L  +++
Sbjct: 317 ASAPVYVHRIGRTARAGCEGLAISLVCHGESDILAAIRTLTGREL 361


>gi|195480298|ref|XP_002101215.1| GE17497 [Drosophila yakuba]
 gi|194188739|gb|EDX02323.1| GE17497 [Drosophila yakuba]
          Length = 962

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 207/378 (54%), Gaps = 14/378 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   V+  +   G+ KPT IQ +  P+ L   D+ GIAQTG+GKT +++LP +
Sbjct: 239 VSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAI 298

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQN 116
             +       R   P  L+L PTRELA Q+      YG      +    + GG     Q 
Sbjct: 299 VHIGNQPPILRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQA 358

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+RG +V+I TPGR++D        +     LV+DEADRMLDMGF P I+ I   +  
Sbjct: 359 RDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 418

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKK 231
            RQ +++SAT   E+Q ++ +FL +  +I + + + +A     + +E C      Q  + 
Sbjct: 419 DRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEMEKPQ--RL 476

Query: 232 CALLQQLLQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
             LL ++  ++++  NG   IIF   K  V ++   +  +G++  +IHG+  Q  R  +L
Sbjct: 477 VRLLNEIAPTKNSANNGNKIIIFVETKIKVEDILQIIRTEGYTATSIHGDKTQNERDSVL 536

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +F+ G   +++A+D+A+RGLD+ D+ +V N+D PN +ENY+HRIGRTGR  + G A+T 
Sbjct: 537 KDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTF 596

Query: 349 VAKEDIKHIDAIEKLIEK 366
              ++ K    +  ++E+
Sbjct: 597 FTPDNAKQARELISVLEE 614


>gi|297693028|ref|XP_002823828.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
           DDX54-like [Pongo abelii]
          Length = 883

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 132/359 (36%), Positives = 197/359 (54%), Gaps = 10/359 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 98  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 158 LKTHSAQT-GARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I + +P   QT+L
Sbjct: 217 PDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVL 276

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS- 241
           FSAT+   L + +   L  P  I ++  +   E ++  F     +   K A+L  LL++ 
Sbjct: 277 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFF--LVREDTKAAVLLHLLRNV 334

Query: 242 ---QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              QD     ++F   K +   L   L  Q  S   I+  +D  +R   L+ F  G    
Sbjct: 335 VRPQDQT---VVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCST 391

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ +DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA ++I ++
Sbjct: 392 LIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYL 450


>gi|302910116|ref|XP_003050220.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256731157|gb|EEU44507.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 407

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 120/362 (33%), Positives = 199/362 (54%), Gaps = 11/362 (3%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           GY  P+ +Q + I  V +  D    AQ+GTGKTA+F + ML ++      VR  + L+L 
Sbjct: 52  GYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVINIA---VRETQALVLS 108

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA Q+       G   N+     IGG       +KL+ G  ++  TPGR+ D   R
Sbjct: 109 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDHGQHIVSGTPGRVADMIRR 168

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
             L   +I++LV+DEAD +L+ GF   I ++   +P   Q ++ SAT+  ++  ++  F+
Sbjct: 169 RHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFM 228

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
            +P RI V     T E ++  F+A   +   +   C L   L     T+   +IFCN ++
Sbjct: 229 TDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTL-----TITQAVIFCNTRR 283

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
            V  L   + +  F+V ++HG++ Q+ R  I+ +F++G  ++++++D+ ARG+D+  V  
Sbjct: 284 KVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSL 343

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
           V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  IE     ++D +  +++
Sbjct: 344 VINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVRILRDIELYYSTQIDEMPMNVA 403

Query: 377 SL 378
            L
Sbjct: 404 DL 405


>gi|224124506|ref|XP_002330040.1| predicted protein [Populus trichocarpa]
 gi|222871465|gb|EEF08596.1| predicted protein [Populus trichocarpa]
          Length = 735

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 133/405 (32%), Positives = 222/405 (54%), Gaps = 30/405 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +D + LGL  ++V  + + G     PIQ   +   L+  D+   A+TGTGKT +F +P++
Sbjct: 96  LDISKLGLPQRLVQTLQNRGITHLFPIQRAVLIPTLEGRDLIARAKTGTGKTLAFGIPII 155

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L +        R   R+P+ L+L PTRELA QV    ++      L+   + GG+ + 
Sbjct: 156 KRLTEDAELRGSQRRTGRLPKVLVLAPTRELAKQVEKEIKESAPY--LSTVCVYGGVSYA 213

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L RG DV++ TPGRI+D      L +  +E LV+DEAD+ML  GF   ++ I   
Sbjct: 214 TQQNALSRGVDVVVGTPGRIIDLLKGNSLKLGEVEYLVLDEADQMLSFGFEEDVEVILES 273

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
           +P  RQ++LFSATM   ++K++  +L NP +I++  +     AE I+   ++T A  + K
Sbjct: 274 LPSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDREEKLAEGIKLYAISTTA--TSK 331

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             +L  L+      +  IIF   K++   +  +L  Q  +  A+HG+I Q  R + L+ F
Sbjct: 332 RTILSDLVTVYAKGEKTIIFTRTKRDADEVSMAL-TQSIASEALHGDISQHQRERTLNGF 390

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA---FTL 348
           ++G   ++VA+D+A+RGLDIP+V  + ++++PN  E ++HR GRTGRAG+ G A   FT 
Sbjct: 391 RQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTN 450

Query: 349 VAKEDIKHID-------------AIEKLIEKKVDWLNGDLSSLNP 380
             +  ++ ++             AIE+L+E   + +   L+ ++P
Sbjct: 451 SQRRTVRSLERDAGCKFEFVSPPAIEELLESSTEQVVATLNGVHP 495


>gi|328711288|ref|XP_001948608.2| PREDICTED: ATP-dependent RNA helicase vasa, isoform A isoform 1
           [Acyrthosiphon pisum]
 gi|328711290|ref|XP_003244501.1| PREDICTED: ATP-dependent RNA helicase vasa, isoform A isoform 2
           [Acyrthosiphon pisum]
          Length = 579

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 131/357 (36%), Positives = 204/357 (57%), Gaps = 13/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F   GL   ++  ++   Y  PTPIQ   IP+++   D+   AQTG+GKTA+FVLP++ T
Sbjct: 163 FKSSGLREVLIEKLVKCNYTTPTPIQKYCIPVIISGRDMMATAQTGSGKTAAFVLPIVHT 222

Query: 62  ILEKGRARVR-----MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +L + +  V       P+ +I+ PTRELA Q+ D   K      +  ++L GG     Q 
Sbjct: 223 LLSQPQDLVFDRDYCEPQCIIMSPTRELAIQIRDVVFKLTNGTCIKQSILYGGTATGHQR 282

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI----TS 172
             L  G  +L+ TPGR+ D   RG +  N++   V+DEADRMLDMGF P I+ I    T 
Sbjct: 283 GTLANGIHILVATPGRLNDFVGRGYVSFNSLRFFVLDEADRMLDMGFKPDIEKILNHETM 342

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +   TRQTLLFSAT+ D++Q +S+ +L+ N   + V       + ++   +    ++ KK
Sbjct: 343 VDVNTRQTLLFSATLADDIQMLSKAYLKPNYVFVAVGEIGGACKDVKQ-EIREVTKFEKK 401

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L++ +L+S    K  ++F  QK+N   +   L ++ +   +IHG+ +Q  R + L +F
Sbjct: 402 KELIK-VLESLGDCKGTMVFVEQKRNADFIAAFLSEKDYPTTSIHGDREQPEREQALRDF 460

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           K   ++++VA+ +AARGLDI  V  V NFD+P+  + Y+HRIGRTGR G  G+A + 
Sbjct: 461 KNNRMKILVATAVAARGLDIKGVNCVINFDMPSSIDEYVHRIGRTGRLGNSGRAVSF 517


>gi|114647098|ref|XP_001152159.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 3 [Pan
           troglodytes]
          Length = 916

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/357 (36%), Positives = 197/357 (55%), Gaps = 6/357 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 98  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 158 LKTHSAQT-GARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I + +P   QT+L
Sbjct: 217 PDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVL 276

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLLQ 240
           FSAT+   L + +   L  P  I ++  +   E ++  F  V    + +    LL+ +++
Sbjct: 277 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLRNMVR 336

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     ++F   K +   L   L  Q  S   I+  +D  +R   L+ F  G    ++
Sbjct: 337 PQDQT---VVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLI 393

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA ++I ++
Sbjct: 394 VTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYL 450


>gi|302552861|ref|ZP_07305203.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
           40736]
 gi|302470479|gb|EFL33572.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
           40736]
          Length = 490

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 123/347 (35%), Positives = 186/347 (53%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL  +++ A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 73  FADLGLPERLLTALGAEGVTTPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 132

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    + +   L +  ++GG+    Q K L  G
Sbjct: 133 TAGQRAESRQPLALVLVPTRELAQQVTDALTPFARALRLRLTTVVGGMSIGRQAKALHSG 192

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D  +RG   ++ + I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 193 AEVVVATPGRLKDLIDRGDCRLDRVAITVLDEADQMTDMGFMPQVTALLDQVAPGGQRML 252

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++   +L +P    V+  +    T+EH  +  + +   K A   Q+    
Sbjct: 253 FSATLDRNVDRLVRAYLHDPVVHSVDPSAGAVTTMEHHLL--HVEDDDKHATTTQIAARD 310

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F + K     L   L   G    A+HG   Q  R + L+ FK+G + ++VA+
Sbjct: 311 GRV---IMFLDTKHAADRLAKKLLAVGVRASALHGGKSQSQRTRTLARFKDGEVTVLVAT 367

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 368 NVAARGIHVDNLDLVVNVDPPGDHKDYLHRGGRTARAGESGTVVTLV 414


>gi|221061229|ref|XP_002262184.1| rna helicase [Plasmodium knowlesi strain H]
 gi|193811334|emb|CAQ42062.1| rna helicase, putative [Plasmodium knowlesi strain H]
          Length = 908

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 140/398 (35%), Positives = 215/398 (54%), Gaps = 51/398 (12%)

Query: 2   DFADLGLSPK--VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           +F D+GL+    ++  +    Y K TPIQ  ++ +++ ++D+ G+AQTG+GKTA ++LP+
Sbjct: 331 NFDDVGLNLHEILLANIKRVNYDKTTPIQKYSLSIIMNKNDLIGVAQTGSGKTAGYLLPI 390

Query: 60  L-----------TILEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL 101
           +           T  E+ +        RV +P  LIL PTRELA Q+  + +K+     +
Sbjct: 391 INHMLLNDPPKHTFYEENQRSSSYYYNRVCLPVCLILAPTRELAVQIFYDSKKFCFETGI 450

Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
              +L GG   + Q   L++GAD+++ TPGR+ D   +GK+ +     LV+DEADRMLDM
Sbjct: 451 KPVVLYGGSNIKMQLSNLDKGADIIVATPGRLNDILEKGKIKLFLTSFLVLDEADRMLDM 510

Query: 162 GFIPYIQNI------------TSLVP------------FTRQTLLFSATMTDELQKVSEN 197
           GF P I++I            + + P              RQT++FSAT   E+Q +++ 
Sbjct: 511 GFSPQIRSIMYDYDMPGNDNESRMNPNKMEYKRYTNEIVKRQTIMFSATFRKEIQVLAKE 570

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG--IIFCNQK 255
           +L N   + +    ST E I+   +  Y +   KC  L +LL   +   NG  IIF   K
Sbjct: 571 YLYNYTFLLIGKVGSTNEYIKQNLI--YIEEENKCNYLLKLLSENN---NGLTIIFVETK 625

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           +    L   L  Q  +   IHG+  Q  R + L  FK G   ++VA+D+AARGLDI ++ 
Sbjct: 626 RKADILERFLNNQKLNAVCIHGDKSQDERERALKLFKRGIKNMLVATDVAARGLDISNIK 685

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           HV NFD+P+  ++YIHRIGRTGRAG  G A + V  ++
Sbjct: 686 HVINFDLPSNIDDYIHRIGRTGRAGNIGIATSFVNDDN 723


>gi|332208126|ref|XP_003253149.1| PREDICTED: probable ATP-dependent RNA helicase DDX10 isoform 1
           [Nomascus leucogenys]
          Length = 872

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 211/376 (56%), Gaps = 21/376 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P+L  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 63  LEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     R++   T     LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +
Sbjct: 131 L----YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE 186

Query: 118 KLERGADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++    ++L+CTPGR+L H +        ++++LV+DEADR+LDMGF   +  I   +P 
Sbjct: 187 RIN-NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAIIENLPK 245

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCAL 234
            RQTLLFSAT T  ++ ++   L+NP+ + V+  +  ST  T+E  ++  + +  +K ++
Sbjct: 246 KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYI--FCELQQKVSV 303

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL--EKQGFSVCAIHGNIDQRSRMKILSNFK 292
           L   L+S    K  I+F +  K V  L       + G S+ A+HG   Q  RM++ + F 
Sbjct: 304 LYSFLRSH-LKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFV 362

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                ++ A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   
Sbjct: 363 RKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPS 422

Query: 353 DIKHIDAIEKLIEKKV 368
           +      +++L++KKV
Sbjct: 423 EKA---MVQQLLQKKV 435


>gi|311031661|ref|ZP_07709751.1| DEAD/DEAH box helicase domain protein [Bacillus sp. m3-13]
          Length = 435

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 139/424 (32%), Positives = 224/424 (52%), Gaps = 24/424 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    + P ++ AV +  + KPT +Q + IP +L      G +QTGTGKT ++++P+L+ 
Sbjct: 5   FEKFNVKPFILEAVKELRFQKPTEVQERMIPSLLNGESAIGQSQTGTGKTHAYLIPILSK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN----LTVALLIGGIPFEAQNKK 118
           ++     V+    +I  PTRELA Q+     K  K  +    +T    IGG   +    +
Sbjct: 65  IDPSLQEVQ---AVITAPTRELANQIYQEVLKITKFCSGEDMITARCYIGGTDKQRTIDR 121

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   +++ TPGRI D      LL++    +V+DEAD MLDMGFI  I  + + +P   
Sbjct: 122 LKQQPHIVVGTPGRIKDLMVENALLVHTARTIVVDEADLMLDMGFIEDIDKVAAAMPKNL 181

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT+ ++L+     +++NPK   V     TA  I+H  +   ++   K  LL  L
Sbjct: 182 QIMVFSATIPEKLKPFLRKYMENPKYTHVAPKQVTAAKIKHLLMPVKSK--SKTKLLHDL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   +     I+F N KK    +  +L +QG  V  IHG+++ R R K++    E   Q 
Sbjct: 240 LVEYNPYL-AIVFTNTKKKADEVADALLEQGLKVGRIHGDLNPRERKKMMKQINELEYQY 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N+++P+  + Y+HR+GRT RA   G A TL    D   + 
Sbjct: 299 VVATDLAARGIDIAGVSHVINYELPSDLDFYVHRVGRTARADYSGNAITLYEPTDENALA 358

Query: 359 AIEKL-IE-KKVDWLNGDLSSLNP---------PLEKIDIAQHNHARKNNPIPQKSTGFD 407
            IEK+ IE  ++D+ NG+L  + P          + +ID+A     +K+  +     G+ 
Sbjct: 359 QIEKMGIEFTQIDFKNGELVEIGPRNKRQNRKKQINEIDVAAKTSVKKSTKV---KPGYK 415

Query: 408 RRKK 411
           ++ K
Sbjct: 416 KKHK 419


>gi|58265474|ref|XP_569893.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108955|ref|XP_776592.1| hypothetical protein CNBC0850 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74686072|sp|Q5KJJ2|FAL1_CRYNE RecName: Full=ATP-dependent RNA helicase FAL1
 gi|50259272|gb|EAL21945.1| hypothetical protein CNBC0850 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226125|gb|AAW42586.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 396

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 123/380 (32%), Positives = 206/380 (54%), Gaps = 11/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L   ++  +    + KP+ IQ + I  +++  DV   AQ+GTGKTA+F + ML  
Sbjct: 25  FEALNLKEDLLRGIYAYNFEKPSAIQQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQS 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     +R  + L+L PTRELA Q+       G   N++    IGG       +KLE G
Sbjct: 85  ID---TNLRETQALVLSPTRELAVQIQTVVLALGDYMNVSCHACIGGTSVGEDIRKLEAG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++L++DE+D +L+ GF   I +I   +P   Q ++
Sbjct: 142 QQVVSGTPGRVFDMIRRRNLRTKDIKMLILDESDELLNKGFKDQIYDIYRYLPPATQVVV 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 202 VSATLPHDVLEMTTKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTL- 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I++ F+ G  +++
Sbjct: 261 ----TITQAVIFCNTRRKVDWLTEKMREANFTVSSMHGEMVQKERDAIMAEFRGGQSRVL 316

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+P   ENY+HRIGR+GR GR G A   V  +D++ +  
Sbjct: 317 ITTDVWARGIDVQQVSLVINYDLPTSRENYLHRIGRSGRFGRKGVAINFVTVDDVRILRD 376

Query: 360 IEKLIEKKVDWLNGDLSSLN 379
           IE+    ++D +  +++ L 
Sbjct: 377 IEQYYSTQIDEMPMNVAELT 396


>gi|294936207|ref|XP_002781657.1| eukaryotic translation initiation factor, putative [Perkinsus
           marinus ATCC 50983]
 gi|239892579|gb|EER13452.1| eukaryotic translation initiation factor, putative [Perkinsus
           marinus ATCC 50983]
          Length = 395

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   ++  +   G+ +P+ +Q + I  +++  DV   +Q+GTGKT  F L  L  
Sbjct: 24  FDALGLKEDLLRGIYQYGFERPSAVQQRAILPIVKGRDVVVQSQSGTGKTCVFALGALQT 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++      R P+ LIL PTRELA Q        G   N+ V   +GG       + LE G
Sbjct: 84  VKPTE---RDPQVLILSPTRELAEQSQKVCLALGDYMNVQVHCCVGGKKLTDDIRALEAG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+    ++  L   ++++LV+DEAD MLD GF   + +I   +P + Q +L
Sbjct: 141 VHIVSGTPGRVYHMISQRHLSTRHLKMLVLDEADEMLDRGFKEQVYDIYRYLPPSTQCVL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SATM +E+ +++ NF+ NP R+ V     T E I+  FVA   +   +   C L   L 
Sbjct: 201 VSATMPNEILEMTNNFMNNPFRVLVKRDELTLEGIKQFFVAVEKEQWKFDTLCDLYDTL- 259

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L + + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 260 ----TITQAVIFCNTKQKVDWLTNKMREAKFTVVSMHGDMPQKERDAIMQKFRSGQARVL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+  RGLD+  V  V  +D+PN  E YIHRIGR+GR GR G A   V ++D++ +  
Sbjct: 316 ITTDIWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKEDDVRILRD 375

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 376 IEQYYSTQIDEMPMNVADL 394


>gi|326779941|ref|ZP_08239206.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|326660274|gb|EGE45120.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 537

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 123/357 (34%), Positives = 187/357 (52%), Gaps = 8/357 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +   ++  +   G  +P PIQ  T+P  L   D+ G  +TG+GKT +F L +L  
Sbjct: 78  FADLDMPAGLLKTLAAQGVTEPFPIQGATLPNSLAGRDILGRGRTGSGKTLAFGLALLAR 137

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               R   R P  ++L PTRELA QV D    Y    NL +A ++GG+    Q+  L RG
Sbjct: 138 TAGRRGEPRAPLAMVLVPTRELAQQVTDALTPYATAVNLRLATVVGGMSITKQSATLRRG 197

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+VL+ TPGR+ D   RG   ++ + I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 198 AEVLVATPGRLKDLIERGDCRLDEVSITVLDEADQMADMGFMPQVVALLKQVEADGQRML 257

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++ + FL +P    V+  +    T+EH  +    +  KK       + ++
Sbjct: 258 FSATLDKNIDRLVKMFLTDPVVHSVDPSAGAVTTMEHHVLHVLDETDKKA------VATK 311

Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              + G  I+F + K+        L   G    A+HG   Q  R + L  FK G +  +V
Sbjct: 312 IAAREGRVIMFVDTKRAADRFAKRLLASGVRAAALHGGRSQPQRNRTLDQFKNGQVTALV 371

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           A+++AARG+ + D+  V N D P   ++Y+HR GRT RAG  G   TLV  E+ + +
Sbjct: 372 ATNVAARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPEEKREM 428


>gi|185134419|ref|NP_001117665.1| Vasa [Oncorhynchus mykiss]
 gi|6521014|dbj|BAA88059.1| Vasa [Oncorhynchus mykiss]
          Length = 647

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 130/360 (36%), Positives = 205/360 (56%), Gaps = 23/360 (6%)

Query: 4   ADLGLSPKVVCAVLD-----AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           A +G     +C  L+     +GY KPTP+Q   IP++    D+   AQTG+GKTA+F+LP
Sbjct: 209 AIMGFEEAALCESLNRNISKSGYKKPTPVQKHGIPIIAAGRDLMACAQTGSGKTAAFLLP 268

Query: 59  MLT-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
           +L  ++  G A      ++ P  +I+ PTREL  Q+     K+     +   ++ GGI  
Sbjct: 269 ILQQLMVDGVAASQFSEIQEPEVIIVAPTRELINQIYMEARKFAHGTCVRPVVVYGGIST 328

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
               +++ +G +VL  TPGR++D   RGK+ ++ +  LV+DEADRMLDMGF P ++ +  
Sbjct: 329 GHTIREILKGCNVLCATPGRLMDIIGRGKIGLSKLRYLVLDEADRMLDMGFEPAMRKLVG 388

Query: 173 L--VPFT--RQTLLFSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQ 227
              +P    RQTL+FSAT  +++QK++ +FL+     + V         +E   V    +
Sbjct: 389 SPGIPAKEDRQTLMFSATYPEDIQKLAADFLKKDYLFLAVGVVGGACSDVEQVVVQV-TK 447

Query: 228 YSKKCALLQQL--LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
           +SK+  LL+ L    S+ TM    +F   K+    +   L ++  +  +IHG+ +QR R 
Sbjct: 448 FSKRDQLLEVLKTTGSERTM----VFVETKRQADFIATFLCREKVNTTSIHGDREQRERE 503

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L +F+ G   ++VA+ +AARGLDI DV H+ NFD+PN  + Y+HRIGRTGR G  G+A
Sbjct: 504 QALGDFRSGRCPVLVATSVAARGLDIKDVQHIVNFDLPNNIDEYVHRIGRTGRCGNTGRA 563


>gi|330934418|ref|XP_003304540.1| hypothetical protein PTT_17169 [Pyrenophora teres f. teres 0-1]
 gi|311318781|gb|EFQ87363.1| hypothetical protein PTT_17169 [Pyrenophora teres f. teres 0-1]
          Length = 1166

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 134/358 (37%), Positives = 197/358 (55%), Gaps = 12/358 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A +GL    +       Y KPT IQ + IP+     D+ G+A+TG+GKT +F +PM+  
Sbjct: 526 WAQMGLLQATMDVFTQVRYEKPTAIQSQAIPIAESGRDLIGVAKTGSGKTLAFGIPMIRH 585

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL++   +    P  LIL PTREL+ Q+    + +     +T+    GG P   Q   L+
Sbjct: 586 ILDQRPLKPSDGPIGLILAPTRELSLQIVHELKPFLAASGITIKCAYGGQPISEQIAMLK 645

Query: 121 RGADVLIC-TPGRILD--HFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           RG   ++C T GR++D    N G++L    I  +V+DEADRM DMGF P +  I + V  
Sbjct: 646 RGGIHILCATAGRLIDLISCNSGRVLSFKRITYVVLDEADRMFDMGFEPQVMKILANVRP 705

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL-- 234
            RQT+LFSATM   +  +++  L++P  I +   S  A  I          Y KK     
Sbjct: 706 DRQTILFSATMPKNMHALAKKALKDPVEITIGGKSKVAAEITQIISVVPPSYDKKINKTL 765

Query: 235 --LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK-QGFSVCAIHGNIDQRSRMKILSNF 291
             L QL  ++D     +IF  +++   +L   L K + FSV  IHG  DQ  R + +S+F
Sbjct: 766 LHLGQLF-AEDENAQVLIFTERQETAEDLLSKLYKAKYFSVNTIHGAKDQTDRNEAISDF 824

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           K+G + +++A+ +AARGLD+P +  VFNFD P   E+Y+HR GRTGRAG  G A TL+
Sbjct: 825 KQGVLSILIATSVAARGLDVPGLAMVFNFDCPTHLEDYVHRCGRTGRAGNKGTAITLI 882


>gi|302788684|ref|XP_002976111.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii]
 gi|300156387|gb|EFJ23016.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii]
          Length = 597

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 133/408 (32%), Positives = 219/408 (53%), Gaps = 28/408 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +  A LG+  ++V A+   G V   PIQ       +Q  D+   A+TGTGKT +F +P+L
Sbjct: 4   LAIASLGIDSRIVDALAKRGIVNLFPIQRAVFQPAMQGLDLIARAKTGTGKTLAFGIPIL 63

Query: 61  TILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             + + ++ ++      PR +IL PTRELA QV +       +  L+V  + GG+  E Q
Sbjct: 64  DNISREKSSMQFRPAGTPRAIILAPTRELAKQVENELVLAAPH--LSVVCIYGGVSIEGQ 121

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L    +V++ TPGR++D   RG L +N ++  ++DEAD+ML +GF   ++ I   +P
Sbjct: 122 RRQLASSVEVVVGTPGRVIDMLERGDLRLNEVKFAILDEADQMLAVGFAEEVERIMQKLP 181

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCA 233
             R T+LFSATM   ++ ++  +L+NP  I++        AE I+   V+T      K  
Sbjct: 182 LQRHTMLFSATMPSWIRNLTSKYLKNPTMIDLVGENEDKVAEGIKLYAVSTNDLAKNK-- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  LL         I+F   K++  ++   + +      A+HG+I Q  R K LS F++
Sbjct: 240 LLADLLTVYAKGGKAIVFTKTKRDTDDVAAVMSRS-IGCEALHGDISQYQREKTLSGFRD 298

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA---FTLVA 350
           G   ++VA+D+AARGLDIP+V  + +++VP  +E ++HR GRTGRAG+ G     +TL  
Sbjct: 299 GRFNVLVATDVAARGLDIPNVDLIVHYEVPGDSETFVHRSGRTGRAGKKGTCILMYTLNQ 358

Query: 351 KEDIKHID-------------AIEKLIEKKVDWLNGDLSSLNPPLEKI 385
           K  ++ I+             A E ++    D  +  + S++P L K+
Sbjct: 359 KRVLRTIESEVGCKFEAIGPPAAEDVLASSSDHASESIKSVHPDLAKL 406


>gi|117164725|emb|CAJ88273.1| putative DEAD/DEAH box helicase [Streptomyces ambofaciens ATCC
           23877]
          Length = 472

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 137/427 (32%), Positives = 220/427 (51%), Gaps = 14/427 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P ++ A+   G  +P PIQ  T+P  L   DV G A+TG+GKT +F L +L  
Sbjct: 42  FDSLGLPPALLKAMTGLGVTRPFPIQAATLPDALAGRDVLGRARTGSGKTLAFGLALLAR 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  + P  L+L  TRELA QV++    Y +  +L +A ++GG+    Q ++L  G
Sbjct: 102 TAGRRADAKRPLALVLVSTRELAQQVSEALAPYARTMDLRLATVVGGLSINRQAEQLRNG 161

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D  +R    ++ + I V+DEAD+M DMGF+P +  I   VP   Q LL
Sbjct: 162 AEVVVATPGRLADLVSRRDCHLDRVRITVLDEADQMCDMGFLPQVTGILDQVPGDGQRLL 221

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  ++ ++  + L +P    V+  S +  T+EH  +  +   + K A+  ++    
Sbjct: 222 FSATLDGDVDQLVRSHLHDPVLASVDPVSGSVATMEHHVLTVHP--ADKHAVATEIAARD 279

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   ++F + K  V      L   G    A+H    Q  R   L+ F +G + ++VA+
Sbjct: 280 GRV---LMFLDTKAGVDRFLRHLRAGGVRAAALHSGKSQPQRTHTLAQFVDGGVTVLVAT 336

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           ++AARG+ +  +  V N D P  A++Y+HR GRT RAG+ G+  TLV  +  + ++ +  
Sbjct: 337 NVAARGIHVDALDLVVNVDPPADAKDYLHRGGRTARAGQSGRVVTLVTPDQRRDVNRM-- 394

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPL 422
           + E  +      + S    L  I  A      K  P   KS+G +   +   ++    P 
Sbjct: 395 MSEAGIRPTITPVRSGEQRLTDITGA------KRPPTAPKSSGGNAPFRGLGTRPGR-PA 447

Query: 423 KESEKIS 429
           KES K S
Sbjct: 448 KESRKTS 454


>gi|328767309|gb|EGF77359.1| hypothetical protein BATDEDRAFT_91848 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 630

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/351 (37%), Positives = 197/351 (56%), Gaps = 19/351 (5%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-----PR 74
           G VKPTPIQ++ +P      D+ GIA TG+GKT  F+LP++ +  +   R+       P 
Sbjct: 202 GIVKPTPIQVQGLPTAFSGRDMIGIAFTGSGKTLVFILPLVMLALEAETRLPWIQGEGPV 261

Query: 75  TLILEPTRELAAQVAD-------NFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
            LIL P+RELA Q  D         E+ G   ++ V L +GGI    Q   L  GA +++
Sbjct: 262 GLILCPSRELARQTYDFTKELCEALEQSGYP-SIRVLLCMGGISMAEQGSVLRAGAHIVV 320

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+ D   + K  +NN + L +DEADRM+DMGF   ++NI S     RQTLLFSATM
Sbjct: 321 ATPGRLQDMLEKNKFNLNNCKYLCMDEADRMIDMGFEDDVRNIMSFFKSQRQTLLFSATM 380

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS-QDTMK 246
             ++Q  +++ L +P  + VN   + A  ++   V    +Y K+ A +  LL+  Q T  
Sbjct: 381 PKKIQNFAKSALISP--VVVNVGRAGAANLD---VIQEVEYVKQEAKMVYLLECLQKTPP 435

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             ++F   K +V ++   L  +G    AIHG+ DQ  R   + +FK     ++VA+D+A+
Sbjct: 436 PVVVFAENKNDVDDIHEYLLLKGIEAVAIHGSKDQEEREFAIKSFKACKADVLVATDVAS 495

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +GLD   + HV N+D+P   E+Y+HRIGRTGR+G+ G A T + +   + I
Sbjct: 496 KGLDFSMIQHVINYDMPKEIEDYVHRIGRTGRSGKTGVATTFINRNSSEQI 546


>gi|148709265|gb|EDL41211.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Mus musculus]
          Length = 633

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 198/361 (54%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G + PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 194 FKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 253

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 254 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMS 313

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 314 VKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 373

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + +N   + A +++   V    +Y K+
Sbjct: 374 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKE 428

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 429 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 488

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 489 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 548

Query: 351 K 351
           K
Sbjct: 549 K 549


>gi|156103037|ref|XP_001617211.1| DEAD/DEAH box helicase [Plasmodium vivax SaI-1]
 gi|148806085|gb|EDL47484.1| DEAD/DEAH box helicase, putative [Plasmodium vivax]
          Length = 923

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 140/398 (35%), Positives = 215/398 (54%), Gaps = 51/398 (12%)

Query: 2   DFADLGLSPK--VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           +F D+GL+    ++  +    Y K TPIQ  ++ +++ ++D+ G+AQTG+GKTA ++LP+
Sbjct: 339 NFDDVGLNLHEILLSNIKKVNYDKTTPIQKYSLSIIMNKNDLIGVAQTGSGKTAGYLLPI 398

Query: 60  L-----------TILEKGRA-------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNL 101
           +           T  E+ +        RV +P  LIL PTRELA Q+  + +K+     +
Sbjct: 399 INHMLLNDPPKHTFYEENQKSSSYYYNRVCLPICLILAPTRELAVQIFYDSKKFCFETGI 458

Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
              +L GG   + Q   L++GAD+++ TPGR+ D   +GK+ +     LV+DEADRMLDM
Sbjct: 459 KPVVLYGGSNIKTQLSNLDKGADIIVATPGRLNDILEKGKIRLFLTSFLVLDEADRMLDM 518

Query: 162 GFIPYIQNI------------TSLVP------------FTRQTLLFSATMTDELQKVSEN 197
           GF P I++I            + + P              RQT++FSAT   E+Q +++ 
Sbjct: 519 GFSPQIRSIMYDYDMPGNENDSRMNPNKMEYKRYTNDVVKRQTIMFSATFRKEIQVLAKE 578

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG--IIFCNQK 255
           +L N   + V    ST E I+   +  Y +   KC  L +LL   +   NG  IIF   K
Sbjct: 579 YLFNYTFLLVGKVGSTNEYIKQNLI--YIEEENKCNYLLKLLSENN---NGLTIIFVETK 633

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           +    +   L  Q  +   IHG+  Q  R + L  FK G   ++VA+D+AARGLDI ++ 
Sbjct: 634 RKADIIERFLNNQKLNAVCIHGDKSQDERERALKLFKRGIKNMLVATDVAARGLDISNIK 693

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           HV NFD+P+  ++YIHRIGRTGRAG  G A + V  ++
Sbjct: 694 HVINFDLPSNIDDYIHRIGRTGRAGNIGIATSFVNDDN 731


>gi|241949729|ref|XP_002417587.1| ATP-dependent, RNA helicase, putative [Candida dubliniensis CD36]
 gi|223640925|emb|CAX45242.1| ATP-dependent, RNA helicase, putative [Candida dubliniensis CD36]
          Length = 538

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 134/343 (39%), Positives = 199/343 (58%), Gaps = 10/343 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTLILE 79
           + KPTPIQ  + P +L   DV G+A+TG+GKT +F +P +  I+  G         L + 
Sbjct: 147 FDKPTPIQSVSWPFLLSNKDVIGVAETGSGKTFAFGVPAINNIITTGNTNTL--SVLCIS 204

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA Q+ DN  +   +  +    + GG+  + Q +KL + A+V++ TPGR++D  N 
Sbjct: 205 PTRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKL-KTANVVVATPGRLVDLIND 263

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQTLLFSATMTDELQKVSENF 198
           G + + N+  LV+DEADRML+ GF   I+ I S      RQTL+F+AT   E+++++ NF
Sbjct: 264 GAINLGNVNYLVLDEADRMLEKGFEEDIKTIISNTNNAKRQTLMFTATWPKEVRELANNF 323

Query: 199 LQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQL--LQSQDTMKNGI-IFCNQ 254
           + +P ++ V      +A       V    ++ K+  L+Q L    + ++  N I IF   
Sbjct: 324 MNSPVKVTVGDRDELSANKRITQIVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALY 383

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           KK    + + L++  FSV AIHG++ Q+ R   LS FK G   L++A+D+AARGLDIP+V
Sbjct: 384 KKEASRIENFLKRNRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNV 443

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
             V N   P   E+Y+HRIGRTGRAG  G A TL   ED KH+
Sbjct: 444 KVVINLTFPLTIEDYVHRIGRTGRAGAKGTAHTLFT-EDEKHL 485


>gi|221057271|ref|XP_002259773.1| ATP-dependent helicase [Plasmodium knowlesi strain H]
 gi|193809845|emb|CAQ40549.1| ATP-dependent helicase, putative [Plasmodium knowlesi strain H]
          Length = 722

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/391 (33%), Positives = 209/391 (53%), Gaps = 31/391 (7%)

Query: 3   FADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FAD+  ++P +   +   G  + T IQ ++   + +  D+ G ++TG+GKT +F LP++ 
Sbjct: 128 FADVPEINPNIAKFLASKGINQMTKIQAQSFRPIYEGRDIIGRSETGSGKTLAFALPLVE 187

Query: 62  ILEK-------------------------GRARV---RMPRTLILEPTRELAAQVADNFE 93
            L K                         GR +    + P  L+LEPTREL+ QV + F+
Sbjct: 188 KLYKVKMGRSGEGVTSSTPHMEKSANAFDGRNQSDDNKNPSILVLEPTRELSKQVENTFK 247

Query: 94  KYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVID 153
           +  + YN  +  + GG  +  Q  KL +G ++L  TPGRI+DH  +  L + NI+ LV+D
Sbjct: 248 EISQFYNFNIMSIYGGESYVYQEAKLRKGIEILTGTPGRIIDHLEKKNLSLQNIKYLVLD 307

Query: 154 EADRMLDMGFIPYIQNITSLVPFTR-QTLLFSATMTDELQKVSENFLQNPKRIEV-NTPS 211
           EAD ML++GF   ++ I S +     Q LL+SAT    ++ +S  +++NP  I+V ++ +
Sbjct: 308 EADEMLNLGFTHDLERILSYINLKEAQILLYSATTPSWVKDISSRYMKNPFFIDVVDSSN 367

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
            T++ I+H  + T     +K  LL+ ++  +      IIF   K     LC     +  S
Sbjct: 368 KTSKNIKHIAIKTPYDIKEKALLLEDIILVKSNGGQVIIFTRTKLEADILCSEGSFKSLS 427

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
              +HGNI Q +R   +  F++G  Q+++A+D+AARGLDI +V  V     PN AE YIH
Sbjct: 428 FAVLHGNIAQTTREHTMQRFRQGMFQILIATDIAARGLDISNVDLVIQCFPPNYAEIYIH 487

Query: 332 RIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           R GRTGRA + G +  L + ED + +  IEK
Sbjct: 488 RAGRTGRANKKGVSVVLFSSEDKQDLIKIEK 518


>gi|20072320|gb|AAH26492.1| Ddx46 protein [Mus musculus]
          Length = 626

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 136/411 (33%), Positives = 221/411 (53%), Gaps = 25/411 (6%)

Query: 39  HDVCGIAQTGTGKTASFVLPMLT------ILEKGRARVRMPRTLILEPTRELAAQVADNF 92
            D+ GIA+TG+GKT +F+LPM         LE+G      P  +I+ PTRELA Q+    
Sbjct: 4   RDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEG----PIAVIMTPTRELALQITKEC 59

Query: 93  EKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF--NRGKLL-MNNIEI 149
           +K+ K   L V  + GG     Q  +L+RGA++++CTPGR++D    N G++  +  +  
Sbjct: 60  KKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTY 119

Query: 150 LVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT 209
           +V+DEADRM DMGF P +  I   V   RQT++FSAT    ++ ++   L  P  ++V  
Sbjct: 120 VVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGG 179

Query: 210 PSSTAETIEH-CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
            S     +E    V    +   K   L    Q   ++   IIF +++++   L   L + 
Sbjct: 180 RSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSV---IIFVDKQEHADGLLKDLMRA 236

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
            +   ++HG IDQ  R  I+++FK GT +L+VA+ +AARGLD+  +  V N+  PN  E+
Sbjct: 237 SYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYED 296

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           Y+HR GRTGRAG  G A+T + ++  ++   I K +E     L+G  +++ P LEK+   
Sbjct: 297 YVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALE-----LSG--TAVPPDLEKLWSD 349

Query: 389 QHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQEND 439
             +  +    I +KS+GF  +   +   +  +   E +K+ K    +Q++D
Sbjct: 350 FKDQQKAEGKIIKKSSGFSGKGFKFDETEQALA-NERKKLQKAALGLQDSD 399


>gi|72548684|ref|XP_843415.1| ATP-dependent RNA helicase [Leishmania major strain Friedlin]
 gi|323363932|emb|CBZ12938.1| putative ATP-dependent RNA helicase [Leishmania major strain
           Friedlin]
          Length = 923

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 129/360 (35%), Positives = 197/360 (54%), Gaps = 27/360 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFADL + P +   +   GY KPTP+Q   IP+ L   D+   AQTG+GKTA+F++P++ 
Sbjct: 471 DFADLLVEPALAANIERCGYKKPTPVQRYGIPVALSGSDLMACAQTGSGKTAAFLIPVVQ 530

Query: 62  IL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +        R R   P  L+L PTRELA Q+ D   K   N ++   ++ GG  +    
Sbjct: 531 YMLVHGVSPARQRKSYPIALVLAPTRELAVQIFDEVRKLTFNTDIFYDVVYGGTRYP--- 587

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--- 173
           ++ E+  D+L+  PGR+ D FN   L  + I+ L++DEADRML+MGF   I+ + +    
Sbjct: 588 QRFEQ--DILVACPGRLRDMFNEEYLSFSAIKFLILDEADRMLEMGFEEQIEELVASRYT 645

Query: 174 -VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEV-----NTPSSTAETIEHCFVATY 225
            +P    RQT +FSAT    +  +++ +L+    +       +T  +  +TIEH      
Sbjct: 646 DMPTVDDRQTFMFSATFPQRILNLAKRYLRRKYYLLTVGRVGSTTKNITQTIEHV----- 700

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
              ++K   L Q++   +     +IF   KK   ++   L ++G S   IHG+  Q+ R 
Sbjct: 701 -PDNEKMDRLLQIIYGHEMSDMVLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDRE 759

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L +FK+    ++VA+D+A+RGLDIPDV HV  FD+P   ++Y HRIGRTGRAG  G A
Sbjct: 760 AALEDFKQKVTPILVATDVASRGLDIPDVAHVVQFDLPQEMDDYTHRIGRTGRAGNKGIA 819


>gi|239940491|ref|ZP_04692428.1| putative DEAD-box RNA helicase [Streptomyces roseosporus NRRL
           15998]
 gi|239986972|ref|ZP_04707636.1| putative DEAD-box RNA helicase [Streptomyces roseosporus NRRL
           11379]
 gi|291443920|ref|ZP_06583310.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291346867|gb|EFE73771.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 539

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 122/357 (34%), Positives = 189/357 (52%), Gaps = 8/357 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +   ++  +   G  +P PIQ  T+P  L   D+ G  +TG+GKT +F L +L  
Sbjct: 84  FADLDMPAALLKTLAAQGVTEPFPIQGATLPNSLAGRDILGRGRTGSGKTLAFGLALLAR 143

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               R+  R P  ++L PTRELA QV D    Y    NL +A ++GG+    Q+  L RG
Sbjct: 144 TAGRRSEPRAPLAMVLVPTRELAQQVTDALTPYATAVNLRLATVVGGMSITKQSATLRRG 203

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+VL+ TPGR+ D   RG   ++ + I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 204 AEVLVATPGRLKDLIERGDCRLDQVAITVLDEADQMADMGFMPQVVALLKQVEADGQRML 263

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++ + FL +P    V+  +    T+EH  +    +  KK       + ++
Sbjct: 264 FSATLDKNIDRLVKMFLTDPVVHSVDPSAGAVTTMEHHVLHVLDETDKKA------VATK 317

Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++G  I+F + K+        L   G    A+HG   Q  R + L  FK G +  +V
Sbjct: 318 IAARDGRVIMFVDTKRAADRFAKRLLASGVRAAALHGGRSQPQRNRTLDQFKNGQVTALV 377

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           A+++AARG+ + D+  V N D P   ++Y+HR GRT RAG  G   TLV  ++ + +
Sbjct: 378 ATNVAARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPDEKREM 434


>gi|260941746|ref|XP_002615039.1| hypothetical protein CLUG_05054 [Clavispora lusitaniae ATCC 42720]
 gi|238851462|gb|EEQ40926.1| hypothetical protein CLUG_05054 [Clavispora lusitaniae ATCC 42720]
          Length = 533

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 129/344 (37%), Positives = 199/344 (57%), Gaps = 12/344 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTLILE 79
           + KPTPIQ  + P +L + DV G+A+TG+GKT +F +P +  IL++ +  +++   L L 
Sbjct: 141 FPKPTPIQAVSWPYLLSQKDVIGVAETGSGKTFAFGVPAVNNILKEKKQGLKV---LCLS 197

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA Q+ DN E   K   ++   + GG+    Q +KL + A + + TPGR++D    
Sbjct: 198 PTRELALQIYDNLELLTKATGISCVAVYGGVSKMDQIEKL-KTASIAVATPGRLVDLLED 256

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQTLLFSATMTDELQKVSEN 197
           G + +++++ LV+DEADRMLD GF  +I+ I    P    RQTL+F+AT   E+++++  
Sbjct: 257 GLVDLSSVDYLVLDEADRMLDKGFEEHIKQIIGHTPAKAQRQTLMFTATWPKEVRELAAE 316

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG----IIFCN 253
           F+ +P ++ +      +       +        K   L QLL+   +  N     +IF  
Sbjct: 317 FMTSPVKVTIGERDELSANKRITQIVEVIDPRDKERKLVQLLRKYQSGSNRNDKVLIFAL 376

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            KK    +   L++ GF V AIHG++ Q+ R   L  FK G   L++A+D+AARGLDIP+
Sbjct: 377 YKKEASRVEGLLQRSGFKVAAIHGDLSQQQRTHALGQFKSGESNLLLATDVAARGLDIPN 436

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           V  V N   P  AE+Y+HRIGRTGRAG+ G A TL  + + KH+
Sbjct: 437 VKVVINLTFPLTAEDYVHRIGRTGRAGQTGIAHTLFTEHE-KHL 479


>gi|321253117|ref|XP_003192635.1| hypothetical protein CGB_C1160C [Cryptococcus gattii WM276]
 gi|317459104|gb|ADV20848.1| hypothetical protein CNBC0850 [Cryptococcus gattii WM276]
          Length = 396

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 123/380 (32%), Positives = 206/380 (54%), Gaps = 11/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L   ++  +    + KP+ IQ + I  +++  DV   AQ+GTGKTA+F + ML  
Sbjct: 25  FEALNLKEDLLRGIYAYNFEKPSAIQQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQS 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     +R  + L+L PTRELA Q+       G   N++    IGG       +KLE G
Sbjct: 85  ID---TNLRETQALVLSPTRELAVQIQTVVLALGDYMNVSCHACIGGTSVGEDIRKLEAG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++L++DE+D +L+ GF   I +I   +P   Q ++
Sbjct: 142 QQVVSGTPGRVFDMIRRRNLRTKDIKMLILDESDELLNKGFKDQIYDIYRYLPPATQVVV 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 202 VSATLPHDVLEMTTKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTL- 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I++ F+ G  +++
Sbjct: 261 ----TITQAVIFCNTRRKVDWLTEKMREANFTVSSMHGEMVQKERDAIMAEFRGGQSRVL 316

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+P   ENY+HRIGR+GR GR G A   V  +D++ +  
Sbjct: 317 ITTDVWARGIDVQQVSLVINYDLPTSRENYLHRIGRSGRFGRKGVAINFVTVDDVRILRD 376

Query: 360 IEKLIEKKVDWLNGDLSSLN 379
           IE+    ++D +  +++ L 
Sbjct: 377 IEQYYSTQIDEMPMNVAELT 396


>gi|311694220|gb|ADP97093.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15]
          Length = 457

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 137/393 (34%), Positives = 212/393 (53%), Gaps = 14/393 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GLS  +   +   G+ +PT IQ K I   L   D+  +A+TG+GKTA+F    +++
Sbjct: 4   FNDFGLSTAMCSNLNQLGFAQPTEIQAKAIAPGLAGKDIIAMAKTGSGKTAAF---GISL 60

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +E+   R+   + L+L PTRELA QVA    +  +   N+ V  L GG+    Q   L  
Sbjct: 61  VERLNPRLFAVQALVLCPTRELADQVAKAIRELARARDNIKVLTLCGGVAIGPQIGSLSH 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI DH  +  L +  ++ +V+DEADRMLDMGF   +++I S  P +RQT+
Sbjct: 121 GAHIVVGTPGRIQDHLRKQTLSLVRLKTVVLDEADRMLDMGFQEAMEDILSQTPPSRQTM 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++++S+ + ++P  +         + IE  F     Q SK  A++  L + 
Sbjct: 181 MFSATWPAPIRELSKQYQKSPVDVRAEDTGDNPD-IEELFYEVSPQ-SKSDAIVALLSER 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ I+FC  K+   ++   L ++GFS   +HG+++QR R  +L  F   +  ++VA
Sbjct: 239 QP--ESCIVFCTTKQQCDDMAAELGERGFSALPLHGDLEQRDRDSVLVRFGNQSCSILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N +     E + HRIGRTGRAG  G A T         I  IE
Sbjct: 297 TDVAARGLDIKSLPLVINAEPARDPEVHTHRIGRTGRAGEQGHAVTFCTPAQGHKITRIE 356

Query: 362 KLIEKKVDW------LNGDLSSLNPPLEKIDIA 388
               + V W      L   L S+ P ++ + IA
Sbjct: 357 SERGRSVTWGDTEKLLATPLKSVVPAMKTLCIA 389


>gi|66816623|ref|XP_642321.1| hypothetical protein DDB_G0277857 [Dictyostelium discoideum AX4]
 gi|74997195|sp|Q54Y81|DDX23_DICDI RecName: Full=ATP-dependent RNA helicase ddx23; AltName:
           Full=ATP-dependent RNA helicase helB2; AltName:
           Full=DEAD box protein 23
 gi|60470121|gb|EAL68101.1| hypothetical protein DDB_G0277857 [Dictyostelium discoideum AX4]
          Length = 834

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 122/384 (31%), Positives = 202/384 (52%), Gaps = 38/384 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  L  +++ A+   GY KP+PIQ+++IP+ L   D+ GIA+TG+GKT +FV+PML  
Sbjct: 415 WQESNLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPMLIY 474

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + K            P  L++ PTREL  Q+      + +++   V  L+GG   E Q  
Sbjct: 475 ISKQPRLTKDTEADGPYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGGQSIEDQAY 534

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           ++ +G +++I TPGR+ D   +  L++N    +V+DEAD M+D+GF P + ++   +P +
Sbjct: 535 QVSKGCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQVTSVLDAMPSS 594

Query: 178 ---------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
                                R T+LFSATM   ++K+S+ +L+ P  I +       + 
Sbjct: 595 FLKSEDDEMAEKQESDRSHIYRTTILFSATMPPLVEKLSKKYLRRPCTITIGEAGKVVDR 654

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNG-----IIFCNQKKNVVNLCHSLEKQGFS 271
           I    +   ++  KK  L Q        +K+G     IIF N+KK+   +   LE+   S
Sbjct: 655 IRQTVIFVKSENDKKEHLTQ-------LIKDGPPPPIIIFVNKKKHCDIIAPVLEECRVS 707

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
              +H    Q  R   L  FK+   ++++A+ +A+RG+ +  V HV NFD+P   E+Y H
Sbjct: 708 YTILHSGRSQEQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIPKNIEDYTH 767

Query: 332 RIGRTGRAGRHGKAFTLVAKEDIK 355
           RIGRTGRAG  G A + +  +D++
Sbjct: 768 RIGRTGRAGSAGLASSFITDKDVE 791


>gi|164419743|ref|NP_001104792.1| ATP-dependent RNA helicase DDX54 isoform 1 [Homo sapiens]
 gi|19110894|gb|AAL85336.1|AF478457_1 ATP-dependent RNA helicase [Homo sapiens]
 gi|119618445|gb|EAW98039.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54, isoform CRA_a [Homo
           sapiens]
          Length = 882

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 132/359 (36%), Positives = 196/359 (54%), Gaps = 10/359 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 98  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 158 LKTHSAQT-GARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I + +P   QT+L
Sbjct: 217 PDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVL 276

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS- 241
           FSAT+   L + +   L  P  I ++  +   E ++  F     +   K A+L  LL + 
Sbjct: 277 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFF--LVREDTKAAVLLHLLHNV 334

Query: 242 ---QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              QD     ++F   K +   L   L  Q  S   I+  +D  +R   L+ F  G    
Sbjct: 335 VRPQDQT---VVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCST 391

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ +DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA ++I ++
Sbjct: 392 LIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYL 450


>gi|51094101|ref|NP_076977.3| ATP-dependent RNA helicase DDX54 isoform 2 [Homo sapiens]
 gi|46576615|sp|Q8TDD1|DDX54_HUMAN RecName: Full=ATP-dependent RNA helicase DDX54; AltName:
           Full=ATP-dependent RNA helicase DP97; AltName: Full=DEAD
           box RNA helicase 97 kDa; AltName: Full=DEAD box protein
           54
 gi|162319036|gb|AAI56670.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [synthetic construct]
          Length = 881

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 132/359 (36%), Positives = 196/359 (54%), Gaps = 10/359 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 98  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 158 LKTHSAQT-GARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I + +P   QT+L
Sbjct: 217 PDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVL 276

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS- 241
           FSAT+   L + +   L  P  I ++  +   E ++  F     +   K A+L  LL + 
Sbjct: 277 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFF--LVREDTKAAVLLHLLHNV 334

Query: 242 ---QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              QD     ++F   K +   L   L  Q  S   I+  +D  +R   L+ F  G    
Sbjct: 335 VRPQDQT---VVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCST 391

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ +DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA ++I ++
Sbjct: 392 LIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYL 450


>gi|121608139|ref|YP_995946.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121552779|gb|ABM56928.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 467

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/393 (35%), Positives = 207/393 (52%), Gaps = 14/393 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ L LSP ++  +   GY + TPIQ   +P  L   D+   A+TG+GKTA+F L +L 
Sbjct: 11  DFSALALSPAMLSNLQRLGYRQMTPIQAACLPAALAGQDLIAQARTGSGKTAAFALALLA 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120
            L+  R  ++    L+L PTRELA QV     +  +   N  +  L GG+P   Q   L 
Sbjct: 71  KLDPRRLALQ---ALVLCPTRELAEQVGSEIRRLARAEENTRLVTLCGGVPLRGQMLSLA 127

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LDH  R +L +  +  LV+DEADRMLDMGF   I  +    P  RQT
Sbjct: 128 HGAHIVVGTPGRVLDHLQRQQLSLAALNTLVLDEADRMLDMGFFDAIATLARQCPGARQT 187

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + + K+   F++ P +I      +  +  +  +       S++   + QLL 
Sbjct: 188 LLFSATYPEGVAKIGAQFMRAPVQITAQARHAEGKIEQRWY---ELGQSQRLPAVAQLL- 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ I FCN ++   +L   L+ QGF   A++G ++QR R ++L  F   +  ++V
Sbjct: 244 GHFRPESAIAFCNTRQQCRDLLAVLQAQGFGALALYGELEQRERDQVLVQFASRSCSVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N  V    + ++HRIGRTGR    G A  L + +++  +  I
Sbjct: 304 ATDVAARGLDIAHLAAVINVAVSPDPQVHVHRIGRTGRGDATGLALNLASLDEMGAVGKI 363

Query: 361 EKLIEKKVDW--LNG----DLSSLNPPLEKIDI 387
           E+L      W  L G        L PP+  I I
Sbjct: 364 EQLQGCASRWFPLTGLTPTGAGPLLPPMVTIQI 396


>gi|28301751|gb|AAN59978.1| DEAD box RNA helicase DP97 [Homo sapiens]
 gi|119618446|gb|EAW98040.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54, isoform CRA_b [Homo
           sapiens]
          Length = 865

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 132/359 (36%), Positives = 196/359 (54%), Gaps = 10/359 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 82  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 141

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 142 LKTHSAQT-GARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 200

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I + +P   QT+L
Sbjct: 201 PDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVL 260

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS- 241
           FSAT+   L + +   L  P  I ++  +   E ++  F     +   K A+L  LL + 
Sbjct: 261 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFF--LVREDTKAAVLLHLLHNV 318

Query: 242 ---QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              QD     ++F   K +   L   L  Q  S   I+  +D  +R   L+ F  G    
Sbjct: 319 VRPQDQT---VVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCST 375

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ +DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA ++I ++
Sbjct: 376 LIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYL 434


>gi|270047502|ref|NP_598820.2| probable ATP-dependent RNA helicase DDX41 [Mus musculus]
 gi|74142777|dbj|BAE33914.1| unnamed protein product [Mus musculus]
          Length = 622

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 198/361 (54%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G + PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 183 FKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 242

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 243 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMS 302

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 303 VKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 362

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + +N   + A +++   V    +Y K+
Sbjct: 363 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKE 417

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 K 351
           K
Sbjct: 538 K 538


>gi|294658755|ref|XP_461087.2| DEHA2F16720p [Debaryomyces hansenii CBS767]
 gi|218512019|sp|Q6BL34|DBP10_DEBHA RecName: Full=ATP-dependent RNA helicase DBP10
 gi|202953360|emb|CAG89469.2| DEHA2F16720p [Debaryomyces hansenii]
          Length = 932

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 128/416 (30%), Positives = 220/416 (52%), Gaps = 51/416 (12%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G S  ++  +   G+ +PTPIQ KTIPL+++  DV G+A+TG+GKTA+F LP++  
Sbjct: 99  FPSFGFSKFLLTNISKKGFKQPTPIQRKTIPLIMENRDVVGMARTGSGKTAAFTLPLVEK 158

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    RV + R +IL P+RELA+Q     +++ K  +L   +LIGG   E Q   +   
Sbjct: 159 LKSHSPRVGV-RAIILSPSRELASQTFKQVKEFSKGTDLRSIVLIGGDSLEEQFSSMMTN 217

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR L      +L +  +E +V DEADR+ +MGF   +  + + +P +RQ+LL
Sbjct: 218 PDVIVATPGRFLHLKVEMELELKTVEYIVFDEADRLFEMGFAEQLNELIAALPSSRQSLL 277

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL--LQQLLQ 240
           FSAT+   L   ++  L NP  + ++  +  ++ ++  F +      +   L  LQ++++
Sbjct: 278 FSATLPRSLIDFAKAGLTNPVLVRLDAETKISDQLQMAFFSIKNNEREASLLYVLQEVIK 337

Query: 241 ---------------------SQDTMKN---------------------------GIIFC 252
                                S+D  ++                            IIF 
Sbjct: 338 LPLASPEEVKRYSDMEKRDNGSEDEAEDENNNKKKRFKFKKERLPPANMLPSKHSTIIFV 397

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             K +V  +   L+  G+ V  I+G +DQ +R + L  F+ G   L+V +D+AARG+DIP
Sbjct: 398 PTKHHVEYVTTLLKDAGYLVSYIYGTLDQHARKQQLYQFRIGMTSLLVVTDVAARGIDIP 457

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            + +V N+ +P  ++ +IHR+GRT RAG  G A+++V ++++ ++  +E  + +KV
Sbjct: 458 ILANVVNYTLPGSSKIFIHRVGRTARAGNSGWAYSIVNEKELPYLLDLELFLGRKV 513


>gi|123457078|ref|XP_001316270.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
 gi|121898971|gb|EAY04047.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
          Length = 513

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 129/337 (38%), Positives = 195/337 (57%), Gaps = 11/337 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G+  +++  +   GY  PT +Q  +IP +L  HD+   +QTG+GKTA+F+LP++T 
Sbjct: 103 FPRCGVDNQILSNIAGLGYKFPTAVQKYSIPYILNGHDLIVTSQTGSGKTAAFMLPVITQ 162

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K +  +  P  +I+ PTRELA Q+ D   K+ +   L    + GG P   Q ++L   
Sbjct: 163 LLKMQLYIH-PSVVIMCPTRELALQIEDQINKFAEGTGLQTVCVFGGSPIHLQLRQLSYA 221

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----R 178
            ++L+ TPGR+ D   RG+L +  ++ L++DEADRMLDMGF P I  + +    T    R
Sbjct: 222 CNILVATPGRLNDILKRGQLQLKYVKYLILDEADRMLDMGFEPQISEVINGFDMTEIANR 281

Query: 179 QTLLFSATMTDELQKVSENFLQNP-KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTLLFSAT   E+Q ++ +F+++   RIEV      A  IE  F   Y +   K   L  
Sbjct: 282 QTLLFSATFPSEVQNLARSFMKSAFTRIEVGLQDPPA-LIEQHF--EYVRDYDKFPALID 338

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L + D     ++F  +K +V  +   L ++ + V AIHG+ D  +R+  L  F  G  +
Sbjct: 339 FLNAHDCPT--LVFAERKTSVDRIEDYLYEENYPVVAIHGDRDMDNRLAALDGFTSGRAR 396

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +MVA+D+AARG+DIP+VGHV N D+P   ++YIHRIG
Sbjct: 397 IMVATDVAARGIDIPNVGHVINMDLPTDVDSYIHRIG 433


>gi|315637556|ref|ZP_07892763.1| ATP-independent RNA helicase DbpA [Arcobacter butzleri JV22]
 gi|315478147|gb|EFU68873.1| ATP-independent RNA helicase DbpA [Arcobacter butzleri JV22]
          Length = 454

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 132/363 (36%), Positives = 200/363 (55%), Gaps = 9/363 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L LS + +  +    Y   T IQ KTIP  LQ  D+   A+TG+GKT +F LP  
Sbjct: 1   MQFSELNLSKEFLQNLDSLEYKTLTLIQEKTIPDALQNKDLIAKAKTGSGKTVAFCLP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
            I+ K +A+    + LIL PTRELA Q+A N     ++ +N+ V  L GG+PF+ Q   L
Sbjct: 59  -IVNKLKAKEFKIQALILAPTRELANQIAQNLRNLSRHIHNVKVLTLCGGVPFKPQVVSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  A +++ TPGR+L H     + + NI   V+DEAD+MLDMGF   I  I   +P  RQ
Sbjct: 118 QHNAHIVVATPGRVLKHIKEKNINLENINTFVLDEADKMLDMGFYDDIMEIIENLPKNRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT    ++  + N L+NP   E++        I   F       S+K AL+  L+
Sbjct: 178 TMLFSATYEKNIEIFASNILKNPIYKEISDEKEI--LINQKFYEVTP--SEKTALIPALI 233

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S +  K  +IFCN K     L   L   G  +  +H +++Q+ R + +  F   +  ++
Sbjct: 234 -SHNQAKTTLIFCNMKITCEKLADDLYDLGLDILTLHSDLEQKQRDETMVLFSNKSYPIL 292

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGL I DV  V N+D+    + + HRIGRT RAG+ G A +L  + +I   + 
Sbjct: 293 IATDVASRGLHIDDVDLVINYDLSLDEKIHTHRIGRTARAGKGGLAISLFTENEIDKFEI 352

Query: 360 IEK 362
           I++
Sbjct: 353 IKE 355


>gi|302769696|ref|XP_002968267.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii]
 gi|300163911|gb|EFJ30521.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii]
          Length = 614

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 133/408 (32%), Positives = 219/408 (53%), Gaps = 28/408 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +  A LG+  ++V A+   G V   PIQ       +Q  D+   A+TGTGKT +F +P+L
Sbjct: 4   LAIASLGIDSRIVDALAKRGIVNLFPIQRAVFQPAMQGLDLIARAKTGTGKTLAFGIPIL 63

Query: 61  TILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             + + ++ ++      PR +IL PTRELA QV +       +  L+V  + GG+  E Q
Sbjct: 64  DNISREKSSMQFRPAGTPRAIILAPTRELAKQVENELVLAAPH--LSVVCIYGGVSIEGQ 121

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L    +V++ TPGR++D   RG L +N ++  ++DEAD+ML +GF   ++ I   +P
Sbjct: 122 RRQLASSVEVVVGTPGRVIDMLERGDLRLNEVKFAILDEADQMLAVGFAEEVERIMQKLP 181

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCA 233
             R T+LFSATM   ++ ++  +L+NP  I++        AE I+   V+T      K  
Sbjct: 182 LQRHTMLFSATMPSWIRNLTSKYLKNPTMIDLVGENEDKVAEGIKLYAVSTNDLAKNK-- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL  LL         I+F   K++  ++   + +      A+HG+I Q  R K LS F++
Sbjct: 240 LLADLLTVYAKGGKAIVFTKTKRDTDDVAAVMSRS-IGCEALHGDISQYQREKTLSGFRD 298

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA---FTLVA 350
           G   ++VA+D+AARGLDIP+V  + +++VP  +E ++HR GRTGRAG+ G     +TL  
Sbjct: 299 GRFNVLVATDVAARGLDIPNVDLIVHYEVPGDSETFVHRSGRTGRAGKKGTCILMYTLNQ 358

Query: 351 KEDIKHID-------------AIEKLIEKKVDWLNGDLSSLNPPLEKI 385
           K  ++ I+             A E ++    D  +  + S++P L K+
Sbjct: 359 KRVLRTIESEVGCKFEAIGPPAAEDVLASSSDHASESIKSVHPDLAKL 406


>gi|239827745|ref|YP_002950369.1| DEAD/DEAH box helicase [Geobacillus sp. WCH70]
 gi|239808038|gb|ACS25103.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. WCH70]
          Length = 435

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 134/377 (35%), Positives = 207/377 (54%), Gaps = 13/377 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ A+ +  + KPT IQ + IP +L+   V G +QTGTGKT +++LP++  
Sbjct: 6   FERFSFQPFIIEAIKELRFYKPTEIQERIIPSILRGESVIGQSQTGTGKTHAYLLPIIEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           ++     V+    +I  PTRELA Q+     K  K    +  +T    IGG   +   +K
Sbjct: 66  IDPDHEAVQ---AVITAPTRELATQIYHEILKIIKFCPSDRQITARCFIGGTDKQKAIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+    +++ TPGRI D      L +     LV+DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LKTQPHIVVGTPGRINDLIREQALNVWTATTLVVDEADLMLDMGFIVDVDQIAARMPKEL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+   + +++NPK + V     TAE IEH  V   ++   K  LL ++
Sbjct: 183 QMLVFSATIPEKLKPFLKKYMENPKYVHVAPKQVTAEKIEHVLVPLRSR--DKAKLLHEM 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L + +     I+F N KK    +   L ++G  V  +HG++  R R K++   ++   Q 
Sbjct: 241 LVAYNPY-LAIVFTNTKKMADEVADRLIEKGMKVGILHGDLTPRERKKMMRQIRDLEFQY 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N+++P   + YIHR+GRT RAG  G A T+    D    D
Sbjct: 300 IVATDLAARGIDIEGVSHVINYELPKDLQFYIHRVGRTARAGYTGIATTIYEPSD---QD 356

Query: 359 AIEKLIEKKVDWLNGDL 375
           AI KL +  +++L+ DL
Sbjct: 357 AITKLEKMGIEFLHRDL 373


>gi|319948221|ref|ZP_08022378.1| DEAD/DEAH box helicase domain protein [Dietzia cinnamea P4]
 gi|319438115|gb|EFV93078.1| DEAD/DEAH box helicase domain protein [Dietzia cinnamea P4]
          Length = 533

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 126/361 (34%), Positives = 186/361 (51%), Gaps = 9/361 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   ++  +  AG   PTPIQ  T+P  L   DV G  +TG+GKT +F LP++  
Sbjct: 5   FADLGVPSPLLDVLNGAGISTPTPIQSATLPDALSGRDVLGRGRTGSGKTYAFCLPLVAR 64

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L    GR     PR LIL PTRELA Q+ +          +   ++ GG+    Q   L 
Sbjct: 65  LAASGGRRTRNAPRGLILAPTRELARQIDETLAPLANALGMKTTVIFGGVSQGRQVDALN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+++  PGR+ D   +    M+ IEI V+DEAD M D+GF+P +  I S  P   Q 
Sbjct: 125 RGVDIVVACPGRLEDLMGQKHCRMDAIEISVLDEADHMADLGFLPGVTRILSATPADAQR 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSST-AETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+   +QK+   FL +P    V+  S+T   T  H F   +     +   L  L 
Sbjct: 185 LLFSATLDSGVQKLVTRFLTDPVDHSVDDGSATPGPTAHHVF---HVDADDRVRALADLA 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       ++F   K     L   L  +G +   +HGN+ Q +R++ L  F  G   ++
Sbjct: 242 GAHPRT---VMFTRTKHGAKRLAKQLTGRGVASVDLHGNLSQNARVRNLDAFSSGEATVL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+ + DVG V + D P   + Y+HR GRT RAG  G   T+   + ++ + +
Sbjct: 299 VATDIAARGIHVDDVGLVVHADPPAEHKAYVHRSGRTARAGAIGTVVTVATADQVREVRS 358

Query: 360 I 360
           +
Sbjct: 359 L 359


>gi|299471815|emb|CBN79482.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 660

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/375 (36%), Positives = 210/375 (56%), Gaps = 25/375 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--ML 60
           F ++ L   ++ A+   G  +PTPIQ++ +P+ L   D+ GIA TG+GKT +F +P  ML
Sbjct: 219 FREMKLPDPMLAALEAKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIML 278

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
            + E+ +  V     P  +IL P+RELA Q  D  + + K+ +      L   L IGG  
Sbjct: 279 ALEEEMKLPVVGGEGPFGVILCPSRELARQTFDVVDYFCKHLHRGGFPELRTVLCIGGED 338

Query: 112 FEAQNKKLER-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             +Q   ++R G   ++ TPGRI D  +  K+  +  + + +DE DRMLDMGF   +Q I
Sbjct: 339 KRSQIDPIQRQGVHCIVATPGRISDLLHTHKVHFDLCKYICLDEGDRMLDMGFDEEVQKI 398

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +     RQTLLFSATM  + Q  +++ L  P  + VN   + A  ++   V    +Y K
Sbjct: 399 MNHFKQQRQTLLFSATMPQKFQDFAKDVLVKP--VLVNVGRAGAANLD---VIQEVEYVK 453

Query: 231 KCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A +  LL+  Q T     IFC +K++V ++   L  +G    +IHG  +Q  R + + 
Sbjct: 454 QEAKIVYLLECLQKTAPPVCIFCEKKQDVDDIHEYLLLKGVDAVSIHGGKEQEERNEAIK 513

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FKEG   +++A+D+AA+GLD PD+ HV NFD+P+  ENY+HRIGRTGR G+ G A T +
Sbjct: 514 LFKEGVKDVLIATDIAAKGLDFPDIQHVINFDMPDEIENYVHRIGRTGRCGKTGVATTFI 573

Query: 350 AKE-------DIKHI 357
            K        D+KH+
Sbjct: 574 NKMVEESALLDLKHL 588


>gi|38014855|gb|AAH05848.2| DDX54 protein [Homo sapiens]
          Length = 864

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 132/359 (36%), Positives = 196/359 (54%), Gaps = 10/359 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 81  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 140

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 141 LKTHSAQT-GARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 199

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I + +P   QT+L
Sbjct: 200 PDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVL 259

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS- 241
           FSAT+   L + +   L  P  I ++  +   E ++  F     +   K A+L  LL + 
Sbjct: 260 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFF--LVREDTKAAVLLHLLHNV 317

Query: 242 ---QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              QD     ++F   K +   L   L  Q  S   I+  +D  +R   L+ F  G    
Sbjct: 318 VRPQDQT---VVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCST 374

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ +DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA ++I ++
Sbjct: 375 LIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYL 433


>gi|73620772|sp|Q91VN6|DDX41_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX41; AltName:
           Full=DEAD box protein 41
 gi|15030112|gb|AAH11308.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Mus musculus]
          Length = 622

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 198/361 (54%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G + PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 183 FKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 242

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 243 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMS 302

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 303 VKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 362

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + +N   + A +++   V    +Y K+
Sbjct: 363 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKE 417

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 K 351
           K
Sbjct: 538 K 538


>gi|195048170|ref|XP_001992482.1| GH24775 [Drosophila grimshawi]
 gi|193893323|gb|EDV92189.1| GH24775 [Drosophila grimshawi]
          Length = 977

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 127/377 (33%), Positives = 206/377 (54%), Gaps = 14/377 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L   V+  +   G+ KPT IQ +  P+ L   D+ GIAQTG+GKT +++LP + 
Sbjct: 240 NFEESSLPTHVIDEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIV 299

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNK 117
            +  +    R   P  L+L PTRELA Q+      YG      +    + GG     Q +
Sbjct: 300 HIGNQPPIMRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQVR 359

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LERG +V+I TPGR++D        +     LV+DEADRMLDMGF P I+ I   +   
Sbjct: 360 DLERGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 419

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKC 232
           RQ +++SAT   E+Q ++ +FL +  +I + + + +A     + +E C      Q  +  
Sbjct: 420 RQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICNENEKPQ--RMM 477

Query: 233 ALLQQLLQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            LL+++  S +    G   IIF   K  V ++   +  +G++  +IHG+  Q  R  +L 
Sbjct: 478 RLLKEITPSNNAANAGNKIIIFVETKIKVEDILQIIRNEGYTATSIHGDKSQSERDSVLR 537

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G   +++A+D+A+RGLD+ D+ +V N+D PN +ENY+HRIGRTGR  + G A+T  
Sbjct: 538 DFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFF 597

Query: 350 AKEDIKHIDAIEKLIEK 366
             ++ K    +  ++E+
Sbjct: 598 TPDNAKQARELISVLEE 614


>gi|67423408|dbj|BAD99523.1| VASA RNA helicase [Artemia franciscana]
          Length = 726

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 121/356 (33%), Positives = 205/356 (57%), Gaps = 13/356 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F   GL PK++  +  +GY +PTP+Q   IP+++++ D+   AQTG+GKT ++++P++  
Sbjct: 306 FDAAGLRPKILDNIKKSGYTQPTPVQKWAIPVIMKKRDLMACAQTGSGKTGAYLIPIINR 365

Query: 62  ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           ++E+G A       + P  +++ PTRELA Q+     K+  +  +   ++ GG+    Q+
Sbjct: 366 LIEEGCAASSYDETQTPEAVVMCPTRELAIQIFKEAVKFSYDTIIKPVVVYGGVAPRYQS 425

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI----TS 172
            K++ G ++L+ TPGR++D  NRG    +  + LV+DEADRMLDMGF+  ++ +    T 
Sbjct: 426 DKVKSGCNILVGTPGRLIDFMNRGVFNFSACKFLVLDEADRMLDMGFMGEVKKVVYHGTM 485

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            V   R TL+FSAT  +E+Q+++  FL+N   + V T       +    +   A+   + 
Sbjct: 486 PVKVERNTLMFSATFPNEVQELAAEFLENYIFVTVGTVGGACMDVLQEVIEIDAK--SRI 543

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L ++L  ++ +K  ++F + KK    L   L  +     +IHG+  Q  R ++L +FK
Sbjct: 544 DRLLEILTEKEGVKT-LVFASSKKTADFLAALLSTKNLPATSIHGDRFQYQREEVLRDFK 602

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            G   ++VA+ +AARGLDI  VG V N+++P   + Y+HRIGRTGR G  G A + 
Sbjct: 603 SGHRNILVATAVAARGLDIKGVGLVINYELPTDIDEYVHRIGRTGRLGNTGHAISF 658


>gi|120597828|ref|YP_962402.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120557921|gb|ABM23848.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 438

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 136/372 (36%), Positives = 209/372 (56%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGL+  ++ A L A    PT +Q   IP +L   DV  +AQTG+GKT +F LP+L
Sbjct: 20  LTFTKLGLNSALIKA-LPAMLQCPTLVQQLAIPAILAGRDVLALAQTGSGKTLAFGLPLL 78

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNK 117
            ++LE+    +   + L+L PTRELA QV    +   +  +  + +  L GG+  + Q  
Sbjct: 79  QSVLEQQAQALITAQALVLVPTRELAQQVTLALQAVAQPLSGAMKIQTLCGGVDIDNQLI 138

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L     +L+ TPGRILD   +  + +++I+ LV+DEADR+L+MGF P +Q + +L+P  
Sbjct: 139 ELAERPQILVATPGRILDLCKQSHITLDSIKHLVLDEADRLLEMGFWPDVQKLIALMPKH 198

Query: 178 RQTLLFSATMTDELQKVSENFLQN-PKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           +QTLLFSAT+ + L  ++   L N P R++ +  +S    IE        + SK  AL+ 
Sbjct: 199 KQTLLFSATLPEALNTLASQLLINDPLRVQAHKANSVVPHIEEQLYLVN-KGSKTQALIA 257

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L Q Q      ++F + + +   +   L K G  V A+HG  DQ  R + L++FK   I
Sbjct: 258 LLKQYQ--WPQVLVFISARDDADAVAKRLAKAGMKVAALHGEKDQTVRSQTLADFKAKRI 315

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+DL ARG+ I  +  V N D+P  A  Y+HRIGRT RAG  G A +LV   ++  
Sbjct: 316 QILVATDLMARGIHIDALPVVVNLDLPMSAPVYVHRIGRTARAGTKGLAISLVCHGEMAT 375

Query: 357 IDAIEKLIEKKV 368
           +  I  L E+ +
Sbjct: 376 LTTIRGLTERAL 387


>gi|58465419|gb|AAW78518.1| DEAD box RNA helicase-PL10A [Monopterus albus]
          Length = 376

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 126/353 (35%), Positives = 200/353 (56%), Gaps = 25/353 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ +   ++  +  + Y +PTP+Q   IP++  R D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 26  FHDVDMGEIIMGNITLSRYTRPTPVQKHAIPIIKTRRDLMACAQTGSGKTAAFLLPVLSQ 85

Query: 63  L-----------------EKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV 103
           +                 E GR   R + P +L+L PTRELA+++ D   K+    ++  
Sbjct: 86  IYTDGPGDALQASKNSGQENGRYGRRKQYPISLVLAPTRELASRIYDEARKFAYRSHVRP 145

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163
            ++ GG     Q ++LERG  +L+ TPGR++D   RGK  + +   LV+DEADRMLDMGF
Sbjct: 146 CVVYGGADIGQQIRELERGCHLLVATPGRLVDMMERGKTGLEHCNYLVLDEADRMLDMGF 205

Query: 164 IPYIQNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
            P I+ I    ++ P   RQT++FSAT   E+Q ++ +FL++   + V    ST+E I  
Sbjct: 206 EPQIRRIVEQDTMPPKGIRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQ 265

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
             V  + + + K + L  LL +       ++F   KK    L   L  +G++  +IHG+ 
Sbjct: 266 KVV--WVEENDKRSFLLDLLNATGKESLTLVFVETKKGADALEDFLYHEGYACTSIHGDR 323

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
            QR R + L +F+ G   ++VA+ +AARGLDI +V HV N+D+P+  E Y+HR
Sbjct: 324 SQRDREEALHHFRSGRCPILVATAVAARGLDISNVKHVINYDLPSDIEEYVHR 376


>gi|143456572|sp|Q0D8N0|RH53_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 53
 gi|218199081|gb|EEC81508.1| hypothetical protein OsI_24871 [Oryza sativa Indica Group]
 gi|222636421|gb|EEE66553.1| hypothetical protein OsJ_23067 [Oryza sativa Japonica Group]
          Length = 602

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 127/369 (34%), Positives = 213/369 (57%), Gaps = 11/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++ A LG+SP +V  +   G  +  PIQ   +   +Q  D+ G A+TGTGKT +F +P++
Sbjct: 84  LEVARLGISPWIVERLAARGITRLFPIQRAVLDPAMQGKDMIGRARTGTGKTLAFGIPIM 143

Query: 61  TIL---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             +    +     R P  +IL PTRELA QV   F++     +L V    GG+P   Q +
Sbjct: 144 DRILRHNEKNGSGRNPLAIILAPTRELARQVEKEFKESAPLDSLCV---YGGVPISHQMR 200

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G DV++ TPGRI+D   RG L ++ I+ +V+DEAD+ML +GF   ++ I   +P  
Sbjct: 201 ALNYGVDVVVGTPGRIIDLLRRGVLNLSEIQFVVLDEADQMLAVGFDEDVEVIMENLPQN 260

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALL 235
           RQ++LFSATM   ++K++  +L++P  I++  +      E I    +A+  ++  K ++L
Sbjct: 261 RQSMLFSATMPSWIRKITSKYLKDPIIIDLVGDEDQKLPEGISLYSIAS--EHYGKPSIL 318

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L++        I+F   K+    L +++ +  ++  A+HG+I Q  R + LS F++G 
Sbjct: 319 GPLIKEHANGGKCIVFTQTKREADRLAYAMGRS-YACQALHGDISQNQRERTLSGFRDGR 377

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+D+AARGLDIP+V  V ++++PN +E ++HR GRT RAG+ G A  +   +  +
Sbjct: 378 FNILVATDVAARGLDIPNVDLVIHYELPNTSELFVHRSGRTARAGKKGSAILIYTNDQAR 437

Query: 356 HIDAIEKLI 364
            +  IE+ I
Sbjct: 438 AVRIIEQDI 446


>gi|226328152|ref|ZP_03803670.1| hypothetical protein PROPEN_02043 [Proteus penneri ATCC 35198]
 gi|225203856|gb|EEG86210.1| hypothetical protein PROPEN_02043 [Proteus penneri ATCC 35198]
          Length = 385

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 124/334 (37%), Positives = 190/334 (56%), Gaps = 6/334 (1%)

Query: 40  DVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
           D+ G A TGTGKTA+F+LP +  +L+  R +   PR LIL PTRELA QVA+  ++   +
Sbjct: 5   DILGSAPTGTGKTAAFLLPAIQHLLDYPRKKSGPPRILILTPTRELAMQVAEQAKELCAH 64

Query: 99  YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
            +L +A + GG+ +    +      D+++ T GR+L +          +E+L++DEADRM
Sbjct: 65  THLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVEMLILDEADRM 124

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQKVSENFLQNPKRIEVNT-PSSTAET 216
           LDMGF   I+ I     + +QTLLFSAT+  + +   ++  L  P  +E+N  PS     
Sbjct: 125 LDMGFANDIETIAGETRWRKQTLLFSATLEGNAVIDFAQRILNEP--VELNADPSRRERK 182

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
               F         K ALL  LL+  D +K  I+F  +++ V  L  +LEKQG     + 
Sbjct: 183 KIQQFYYHADNLEHKTALLAALLKQND-VKKSIVFVRKRERVRELVTALEKQGIKCSYLE 241

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G + Q  R   +   + G + ++VA+D+A+RGLD+ D+ HVFNFD+P  A+ Y+HRIGRT
Sbjct: 242 GEMAQTQRNDAIKRLESGKMNVLVATDVASRGLDLDDITHVFNFDLPRTADVYLHRIGRT 301

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           GRAGR G A +LV   D   +  I + +++ + +
Sbjct: 302 GRAGRKGIAISLVEAHDHPLLGKIGRYVQEPIKY 335


>gi|126134271|ref|XP_001383660.1| DEAD box RNA helicase [Scheffersomyces stipitis CBS 6054]
 gi|146286100|sp|A3LQW7|DBP2_PICST RecName: Full=ATP-dependent RNA helicase DBP2
 gi|126095809|gb|ABN65631.1| DEAD box RNA helicase [Scheffersomyces stipitis CBS 6054]
          Length = 530

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 123/339 (36%), Positives = 184/339 (54%), Gaps = 13/339 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+  PT IQ +  P+ L   D+ GIA TG+GKT S+ LP +  
Sbjct: 99  FDEAGFPEYVLNEVKAQGFPSPTAIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPAIVH 158

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+G +  +    + GG P   Q 
Sbjct: 159 INAQPLLSPGDG----PVVLVLAPTRELAVQIQQECSKFGSSSRIRNTCVYGGAPKGQQI 214

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +++I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 215 RDLARGVEIVIATPGRLIDMLEMGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 274

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E+Q ++ ++LQ+P ++ + +    A       V   ++Y K+  L++
Sbjct: 275 DRQTLMWSATWPKEVQNLARDYLQDPIQVRIGSLELAASHTITQVVEVISEYEKRDRLVK 334

Query: 237 QLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             L++  T K    +IF + KK    +   L   G+   AIHG+  Q  R  +L  FK G
Sbjct: 335 H-LETATTEKESKVLIFASTKKTCDEVTSYLRADGWPALAIHGDKQQSERDWVLREFKTG 393

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
              +MVA+D+AARG+D+  +  V NFD+P   E+Y+HRI
Sbjct: 394 KSPIMVATDVAARGIDVKGINFVINFDMPGNIEDYVHRI 432


>gi|195612018|gb|ACG27839.1| nucleolar RNA helicase 2 [Zea mays]
          Length = 744

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/403 (34%), Positives = 217/403 (53%), Gaps = 28/403 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +  A LGL  ++V  +   G     PIQ   +   L+  D+   A+TGTGKT +F +PM+
Sbjct: 88  LAIARLGLPDELVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGIPMI 147

Query: 61  TIL---EKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L   + GR   R R PR L+L PTRELA QV    ++      L    + GG+ +  Q
Sbjct: 148 KQLIEQDDGRITRRGRTPRVLVLAPTRELAKQVEKEIKESAPK--LGTVCVYGGVSYNVQ 205

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG DV++ TPGRI+D  N G L +  ++ LV+DEAD+ML +GF   ++ I   +P
Sbjct: 206 QNALSRGVDVVVGTPGRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQLP 265

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCA 233
             RQ++LFSATM   ++K+S  +L NP  I++  +     AE I+   +   A  + K  
Sbjct: 266 AGRQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTA--TSKRT 323

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +L  L+         I+F   KK+   +  +L     +  A+HG+I Q  R + L+ F++
Sbjct: 324 VLSDLITVYAKGGKTIVFTRTKKDADEVSLALTNS-IASEALHGDISQHQRERTLNGFRQ 382

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA---FTLVA 350
           G   ++VA+D+AARGLDIP+V  + ++++PN  E ++HR GRTGRAG+ G A   FT   
Sbjct: 383 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQ 442

Query: 351 KEDIKHID-------------AIEKLIEKKVDWLNGDLSSLNP 380
           K  +K ++             +IE+++E   + +   L  ++P
Sbjct: 443 KRTVKSLERDVGCNFEFISPPSIEEVLESSAEHVIATLRGVHP 485


>gi|157126121|ref|XP_001654546.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108873390|gb|EAT37615.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 741

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 203/362 (56%), Gaps = 8/362 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE----- 64
           P+++  +   G+ KP+PIQ +  P++L+  D+ GIAQTGTGKT +F+LP    +E     
Sbjct: 332 PELLEEIKKQGFAKPSPIQAQAWPVLLKGEDLIGIAQTGTGKTLAFLLPAFIHIEGQPVP 391

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           +G AR   P  L++ PTRELA Q+     KY +  ++    L GG     Q  K++ G +
Sbjct: 392 RGEAR-GGPNVLVMAPTRELALQIEKEVFKY-QFRDIKAICLYGGGDRRTQINKVKGGVE 449

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           ++I TPGR+ D      + + +I  LV+DEADRMLDMGF P I+ +   +   RQT++ S
Sbjct: 450 IIIATPGRLNDLVAANVIDITSITYLVLDEADRMLDMGFEPQIRKLLLDIRPDRQTIMTS 509

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT    +++++++++ NP ++ V T    A       +    +  K   ++   + +   
Sbjct: 510 ATWPPGVRRLAQSYMSNPVQVYVGTLDLAATHTVTQQIEVIDEEDKYMRVMN-FVTNMGP 568

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
               IIFC +K    +L       G +  ++HG+ +Q  R + L + K G +++++A+D+
Sbjct: 569 SDKVIIFCGRKTRADDLSSEFVLSGINCTSLHGDREQADREQALEDIKSGDVRVLIATDV 628

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           A+RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + +   + D      + K++
Sbjct: 629 ASRGLDIEDISHVVNYDFPRNIEEYVHRVGRTGRAGRSGVSLSFFTRGDWAVASDLIKIL 688

Query: 365 EK 366
           E+
Sbjct: 689 EE 690


>gi|332250661|ref|XP_003274471.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Nomascus leucogenys]
          Length = 878

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 132/359 (36%), Positives = 196/359 (54%), Gaps = 10/359 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 98  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 158 LKTHSAQT-GARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D +I TPGR++       L + ++E +V DEADR+ +MGF   +Q I + +P   QT+L
Sbjct: 217 PDTIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIITRLPGGHQTVL 276

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS- 241
           FSAT+   L + +   L  P  I ++  +   E ++  F     +   K A+L  LL++ 
Sbjct: 277 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFF--LVREDTKAAVLLHLLRNV 334

Query: 242 ---QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              QD     ++F   K +   L   L  Q  S   I+  +D  +R   L+ F  G    
Sbjct: 335 VRPQDQT---VVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSA 391

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ +DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA ++I ++
Sbjct: 392 LIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYL 450


>gi|281207287|gb|EFA81470.1| DEAD/DEAH box helicase [Polysphondylium pallidum PN500]
          Length = 922

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/350 (37%), Positives = 196/350 (56%), Gaps = 18/350 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L   ++  +   G  KPTPIQI+ IP++L   D+ GIA TG+GKT  F LPM+  
Sbjct: 208 FREMKLPHAIIDCLKKKGIKKPTPIQIQGIPVILSGRDMIGIAFTGSGKTLVFTLPMVLF 267

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADN-------FEKYGKNYNLTVALLIGGI 110
             +   ++ +     P  LI+ P+RELA Q  D          K G    L   L +GGI
Sbjct: 268 AMEMELKLPLISGEGPFGLIICPSRELARQTYDGVVEMAGALSKAGGYPPLRTLLCMGGI 327

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
            F  Q  +L +G  +++ TPGR+LD  N+ K+ + + + L +DEADR++D+GF   I+ +
Sbjct: 328 DFREQEPELRKGVHMIVATPGRLLDMLNKKKINLISCKYLGLDEADRLIDLGFEEEIRGV 387

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q  + + L  P  +EVN   + A  ++   V    +Y K
Sbjct: 388 MDNFTAQRQTLLFSATMPKKIQNFARSALVRP--VEVNVGRAGAANLD---VIQEVEYVK 442

Query: 231 KCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A +  LL+  Q T    +IFC  KK+V ++   L  +     ++HG+  Q  R   + 
Sbjct: 443 QEAKIVYLLECLQKTPPPVLIFCENKKDVDDIYEYLLLKQVEAVSLHGDKTQEERDIAIK 502

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            FKEG   +++A+D+A++GLD PD+ HV NFD+P   ENYIHRIGRTGR 
Sbjct: 503 MFKEGKKDVLIATDVASKGLDFPDIQHVINFDMPKEIENYIHRIGRTGRC 552


>gi|327265659|ref|XP_003217625.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Anolis
           carolinensis]
          Length = 672

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 200/361 (55%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G  +PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 233 FKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 292

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +  +      L  AL IGG+ 
Sbjct: 293 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLHEDGMPSLRCALCIGGMS 352

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + ++ G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 353 VKEQMETIKHGVHMMVATPGRLMDLLQKKMVSLDVCRYLALDEADRMIDMGFEGDIRTIF 412

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  I +N   + A +++   V    +Y K+
Sbjct: 413 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--ITINVGRAGAASLD---VIQEVEYVKE 467

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 468 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 527

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F++G   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 528 FRDGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 587

Query: 351 K 351
           K
Sbjct: 588 K 588


>gi|254577027|ref|XP_002494500.1| ZYRO0A02948p [Zygosaccharomyces rouxii]
 gi|238937389|emb|CAR25567.1| ZYRO0A02948p [Zygosaccharomyces rouxii]
          Length = 557

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 126/359 (35%), Positives = 206/359 (57%), Gaps = 18/359 (5%)

Query: 21  YVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPMLTILEKGRAR------VRM 72
           Y +PTPIQ   +P V  +   D+ GIA TG+GKT +F++P+L  +++  +R      +  
Sbjct: 175 YHEPTPIQRAAVPNVCNKKFRDLLGIASTGSGKTLAFLIPILMKIDQLPSRPLVLKKMDG 234

Query: 73  PRTLILEPTRELAAQVADNFEK----YGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
           P  LIL PTRELA Q+    E+    +GKN    VA ++GG   E  + ++ +G D+L+ 
Sbjct: 235 PLALILAPTRELAQQIEKEAEELIDAWGKN--CEVASIVGGHSIEEISLQVSQGTDILVA 292

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR++D      L +  +E LV+DEADRM+DMGF   + +I   +   RQT++F+A+MT
Sbjct: 293 TPGRLIDCLENHVLTLGKVETLVLDEADRMIDMGFEEQVTSILGNLTQKRQTMMFTASMT 352

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
              +K++  +L+NP R+ V+    +   I        ++  +   +++ L Q +  +   
Sbjct: 353 PGTEKIAAGYLKNPVRVTVSGSQGSTPMIRQLVEHIGSEEQRFQRIVEFLPQYRAPI--- 409

Query: 249 IIFCNQKKNVVNLCHSLEKQG-FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
           IIF N K+    L     K+  + V  ++G+  Q  R + L   ++G +Q+M+A+++AAR
Sbjct: 410 IIFINYKRAADWLVQKFYKETQYKVTVLYGSKSQEQREQSLQLLRKGKVQIMIATNVAAR 469

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           GLD+PDV  V NF +    E+Y+HRIGRTGRAG  G A T +  ED + +  + K +++
Sbjct: 470 GLDVPDVSLVINFQLSKTFEDYVHRIGRTGRAGHEGTAITFLDDEDPELVKELYKYLQE 528


>gi|55749865|ref|NP_874358.2| DEAD box protein 53 [Homo sapiens]
 gi|143811384|sp|Q86TM3|DDX53_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX53; AltName:
           Full=Cancer-associated gene protein; AltName:
           Full=Cancer/testis antigen 26; Short=CT26; AltName:
           Full=DEAD box protein 53; AltName: Full=DEAD box protein
           CAGE
 gi|119619396|gb|EAW98990.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Homo sapiens]
          Length = 631

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 129/393 (32%), Positives = 215/393 (54%), Gaps = 7/393 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK---G 66
           P ++ +++  G VKPTPIQ +  P++LQ  D+  +AQTGTGKT S+++P    L+     
Sbjct: 231 PDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS 290

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTRELA  V     KY     L    + GG     Q + + +G D++
Sbjct: 291 REQRNGPGMLVLTPTRELALHVEAECSKYSYK-GLKSICIYGGRNRNGQIEDISKGVDII 349

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + +I  LVIDEAD+MLDM F P I+ I   V   RQT++ SAT
Sbjct: 350 IATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSAT 409

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
             D +++++ ++L++P  + V   +  A  T++   + T  +  +K AL Q+ +++    
Sbjct: 410 WPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEK--EKRALTQEFVENMSPN 467

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F +QK    +L      QG S  ++HGN +Q  + + + +FK G I++++ +D+ 
Sbjct: 468 DKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIV 527

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLD+ DV HV+N+D P   + Y+HR+G  GR G+ G + TL+ + D K    + K+++
Sbjct: 528 SRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELIKILD 587

Query: 366 KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           +    +  DL  +    +     +H   R   P
Sbjct: 588 RANQSVPEDLVVMAEQYKLNQQKRHRETRSRKP 620


>gi|29830698|ref|NP_825332.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680]
 gi|29607811|dbj|BAC71867.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 502

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 124/377 (32%), Positives = 198/377 (52%), Gaps = 12/377 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +  +++ A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 68  FADLAMPSQLLAALSSEGVTTPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 127

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y ++  L +  ++GG+    Q+  L  G
Sbjct: 128 TAGQRAEPRQPLALVLVPTRELAQQVTDALAPYARSVKLRLTTVVGGMSIGRQSGALRAG 187

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D  +RG   ++ + I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 188 AEVVVATPGRLKDLIDRGDCRLDQVGITVLDEADQMADMGFMPQVTALLDQVRPEGQRML 247

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  +    T+EH  +  +     +         ++
Sbjct: 248 FSATLDRNVDLLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVHGADKHQAT-------TE 300

Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++G  I+F + K  V  L   L   G    A+HG   Q  R + LS FK G + ++V
Sbjct: 301 IAARDGRVIMFLDTKHAVDRLTEHLLSSGVRAAALHGGKSQPQRNRTLSQFKTGHVTVLV 360

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA---KEDIKHI 357
           A+++AARG+ + ++  V N D P+  ++Y+HR GRT RAG+ G   TLV    + D+  +
Sbjct: 361 ATNVAARGIHVDNLDLVVNVDPPSDHKDYLHRGGRTARAGQSGSVVTLVTPHQRRDMSRL 420

Query: 358 DAIEKLIEKKVDWLNGD 374
             +  ++ +     +GD
Sbjct: 421 MTVAGIVPQTTQVRSGD 437


>gi|322495556|emb|CBZ30861.1| putative ATP-dependent RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 926

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 129/360 (35%), Positives = 197/360 (54%), Gaps = 27/360 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFADL + P +   +   GY KPTP+Q   IP+ L   D+   AQTG+GKTA+F++P++ 
Sbjct: 475 DFADLLVEPALAANIERCGYKKPTPVQRYGIPVALSGSDLMACAQTGSGKTAAFLIPVVQ 534

Query: 62  IL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +        R R   P  L+L PTRELA Q+ D   K   N ++   ++ GG  +    
Sbjct: 535 YMLVHGVSPARQRKSYPIALVLAPTRELAVQIFDEVRKLTFNTDIFYDVVYGGTRYP--- 591

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--- 173
           ++ E+  D+L+  PGR+ D FN   L  + I+ L++DEADRML+MGF   I+ + +    
Sbjct: 592 QRFEQ--DILVACPGRLRDMFNEEYLSFSAIKFLILDEADRMLEMGFEEQIEELVASRYT 649

Query: 174 -VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEV-----NTPSSTAETIEHCFVATY 225
            +P    RQT +FSAT    +  +++ +L+    +       +T  +  +TIEH      
Sbjct: 650 DMPTVDERQTFMFSATFPQRILNLAKRYLRRKYYLLTVGRVGSTTKNITQTIEHV----- 704

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
              ++K   L Q++   +     +IF   KK   ++   L ++G S   IHG+  Q+ R 
Sbjct: 705 -PDNEKMDRLLQIIYGHEMSDMVLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDRE 763

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L +FK+    ++VA+D+A+RGLDIPDV HV  FD+P   ++Y HRIGRTGRAG  G A
Sbjct: 764 AALEDFKQKVTPILVATDVASRGLDIPDVAHVVQFDLPQEMDDYTHRIGRTGRAGNKGIA 823


>gi|326527477|dbj|BAK08013.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 614

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 129/366 (35%), Positives = 207/366 (56%), Gaps = 11/366 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++ A LG+S ++V  +   G  K  PIQ   +   +Q  D+ G A+TGTGKT +F +P++
Sbjct: 105 LEVAKLGISSEIVKRLAAKGITKLFPIQKAVLEPAMQGKDMVGRAKTGTGKTLAFGIPIM 164

Query: 61  TILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             + +        R+P  + L PTRELA QV   F        L V    GG P + Q +
Sbjct: 165 DAIIRHNEINKPGRLPLAICLAPTRELAKQVDKEFVDSSPLQTLCV---YGGTPIQQQMR 221

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G DV++ TPGR++D   RG L ++ ++ +V+DEAD+ML +GF   ++ I + VP  
Sbjct: 222 ALDYGVDVVVGTPGRVIDLLKRGALNLSMVQFVVLDEADQMLSVGFDEDVEIILNKVPPK 281

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALL 235
           RQTL+FSATM   ++K+ + +L++P  +++        AE I    +AT  +   K A+L
Sbjct: 282 RQTLMFSATMPPWIRKLMQKYLKDPVIVDLVGEDDQKLAEGISLLSIAT--ENHAKPAVL 339

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            QL+Q        I+F   K++   L +++ +      A+HG+I Q  R + L  F+EG 
Sbjct: 340 AQLIQDHAKGGKCIVFTQTKRDADRLSYTMGRT-VQCQALHGDITQGQRERTLQGFREGR 398

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
              ++A+D+AARGLDIP+V  V ++++PN +E ++HR GRTGRAG+ G A  +      +
Sbjct: 399 FSTLIATDVAARGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGIAIVMYGYNQSR 458

Query: 356 HIDAIE 361
            +  IE
Sbjct: 459 AVRGIE 464


>gi|153001915|ref|YP_001367596.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151366533|gb|ABS09533.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 443

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 150/432 (34%), Positives = 231/432 (53%), Gaps = 22/432 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF----- 55
           + FA+LG++  ++ A L A  V PT +Q   IP +L   D+  +AQTG+GKT +F     
Sbjct: 13  LTFAELGINSALLKA-LPATLVHPTKVQQLAIPAILAGRDLLALAQTGSGKTLAFGLPLL 71

Query: 56  VLPMLTILEKGRARVRMPRT----LILEPTRELAAQVADNFEKYGK--NYNLTVALLIGG 109
              +L    + +    +P +    L+L PTRELA QV +  +      + +L + LL GG
Sbjct: 72  QQLLLQQQTQLQGTKSVPPSNALALVLVPTRELALQVTEALQAVASQLSASLNIQLLCGG 131

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +P E Q  +L     VL+ TPGR+LD   +  + +++I+ LV+DEADR+L+MGF P +Q 
Sbjct: 132 VPLEDQLVELAAKPQVLVATPGRLLDLCKQSHISLDSIKHLVLDEADRLLEMGFWPDVQK 191

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQN-PKRIEVNTPSSTAETIEHCFVATYAQY 228
           + + +P  +QTLLFSAT+ + L  ++E  L N P R+E +  +S A  IE        + 
Sbjct: 192 LMAFMPKLKQTLLFSATLPEALDTLTEKLLVNEPLRVEAHKVNSVAGEIEEQLYLVN-KG 250

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           SK   L+  L Q Q      ++F + + +   +   L K G  V A+HG  DQ  R + L
Sbjct: 251 SKAQVLIALLKQYQ--WPQVLVFISARDDADAVAKRLAKAGMKVAALHGEKDQAVRSQTL 308

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           ++FK   IQ++VA+DL ARG+ +  +  V N D+P  A  Y+HRIGRT RAG  G A +L
Sbjct: 309 ADFKANRIQVLVATDLMARGIHVDALPVVINLDLPMSAPVYVHRIGRTARAGEKGLAISL 368

Query: 349 VAKEDIKHIDAIEKLIEKKVDW-LNGDLSSLNPPLEKID--IAQHNHARKNNPIPQKSTG 405
           V   ++  + AI  L  +++   L  D    + P E      A+    RK  P  +++  
Sbjct: 369 VCHGEMATLTAIRSLTARELPLALLADFPVTDKPSENTSDGTAESKVERKRPPRDKQA-- 426

Query: 406 FDRRKKNYSSQK 417
            +RR  N  S K
Sbjct: 427 -NRRSINKHSAK 437


>gi|226510222|ref|NP_001147777.1| nucleolar RNA helicase 2 [Zea mays]
 gi|195613718|gb|ACG28689.1| nucleolar RNA helicase 2 [Zea mays]
          Length = 613

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 207/368 (56%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           ++ A LG SP++V  +   G  +  PIQ   +   +Q  D+ G A+TGTGKT +F +P+ 
Sbjct: 95  LEIARLGTSPRIVEKLAARGITRLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIM 154

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
              L+  EK     R P  +IL PTRELA QV   F +   +  L    + GG+P   Q 
Sbjct: 155 DKILSYNEK-NGNGRNPLAIILAPTRELARQVEKEFRE---SAPLDTLCVYGGVPINQQM 210

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  G D+++ TPGR++D   RG L ++ I+ +V+DEAD+ML +GF   ++ I   +P 
Sbjct: 211 RALNYGVDIVVGTPGRVIDLLRRGVLNLSQIQFVVLDEADQMLAVGFDEDVEVIMEQLPQ 270

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ++LFSATM   ++K+S  +L++P  I++   S           +  +    K +++ 
Sbjct: 271 NRQSMLFSATMPSWIRKISNKYLKDPVIIDLVGDSDQKLPEGISLYSIASDNFGKPSIIG 330

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L++    +   I+F   K+    L + + +  +   A+HG+I Q  R + LS F++G  
Sbjct: 331 PLIKEHANVGKCIVFTQTKREADRLAYVMGRS-YQCQALHGDISQNQRERTLSGFRDGRF 389

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLDIP+V  V ++++PN +E ++HR GRT RAG+ G A  +   E  + 
Sbjct: 390 NILVATDVAARGLDIPNVDLVVHYEIPNTSELFVHRSGRTARAGKKGSAILIYTYEQTRA 449

Query: 357 IDAIEKLI 364
           +  IE+ I
Sbjct: 450 VRVIEQDI 457


>gi|242080401|ref|XP_002444969.1| hypothetical protein SORBIDRAFT_07g002100 [Sorghum bicolor]
 gi|241941319|gb|EES14464.1| hypothetical protein SORBIDRAFT_07g002100 [Sorghum bicolor]
          Length = 946

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 130/377 (34%), Positives = 215/377 (57%), Gaps = 7/377 (1%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           G + K++  +   G+ KP PIQ + +P+++   D  G+A+TG+GKT +F+LPML  ++  
Sbjct: 371 GQTSKLLDTIKKLGFEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFLLPMLRHVKDQ 430

Query: 67  R--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
              A    P  LI+ PTREL  Q+  + +K+ K   ++   + GG     Q  +L+RGA+
Sbjct: 431 PPVAPGDGPVGLIVAPTRELVVQIYLDIKKFSKVLGISCVAVYGGSGVAQQISELKRGAE 490

Query: 125 VLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           +++CTPGR++D    + GK+  +  +  LV+DEADRM DMGF P I  I   +   RQT+
Sbjct: 491 IVVCTPGRMIDILCTSNGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRRDRQTV 550

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   +++ ++   L  P  I+V   S   + I    V    +  +   LL+ L + 
Sbjct: 551 LFSATFPRQVEMLARKVLIKPVEIQVGGRSVVNKDITQV-VEVRPESERFLRLLELLGKW 609

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D  K  ++F + +    +L  +L + G+   ++HG  DQ  R   +++FK     L++A
Sbjct: 610 CDKGKI-LVFVHTQDKCDSLLKNLFQHGYQCLSLHGGKDQADRESTVADFKSNICSLLIA 668

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           + +AARGLD+ ++  V N+DVPN  E+Y+HR+GRTGRAGR G A T +++E+ ++   + 
Sbjct: 669 TSVAARGLDVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKGSAVTFISEEEERYAPDLV 728

Query: 362 KLIEKKVDWLNGDLSSL 378
           K +E     +  DL +L
Sbjct: 729 KALELSEQTVPDDLKAL 745


>gi|330888787|gb|EGH21448.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. mori str.
           301020]
          Length = 391

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 119/320 (37%), Positives = 186/320 (58%), Gaps = 5/320 (1%)

Query: 52  TASFVLPMLT--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
           TA F LP+L    +E  +      R L+L PTRELA QV ++  +Y ++  L+     GG
Sbjct: 1   TAGFALPLLQRLTMEGPKVAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGG 60

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +    Q  KL +G DVL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ 
Sbjct: 61  VSINPQMMKLRKGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRG 120

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I +++P  RQTLLFSAT +DE++ ++   L +P  IEV+  +  A +++   V       
Sbjct: 121 IYAVLPKQRQTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKK 178

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           +K  L   L++        ++F   +  V  L   L+  G     IHG+  Q +R + L 
Sbjct: 179 RKADLFIHLMKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLDADGIHGDKPQATRQRALD 237

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK   ++++VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV
Sbjct: 238 RFKSNEVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 297

Query: 350 AKEDIKHIDAIEKLIEKKVD 369
             ++++ + AIE L  + ++
Sbjct: 298 CADEVELLSAIEVLTRQTLE 317


>gi|168180351|ref|ZP_02615015.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|168185059|ref|ZP_02619723.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|226949022|ref|YP_002804113.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           botulinum A2 str. Kyoto]
 gi|237795189|ref|YP_002862741.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           botulinum Ba4 str. 657]
 gi|182668710|gb|EDT80688.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|182671890|gb|EDT83851.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|226842744|gb|ACO85410.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A2 str. Kyoto]
 gi|229262468|gb|ACQ53501.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Ba4 str. 657]
          Length = 421

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 113/362 (31%), Positives = 208/362 (57%), Gaps = 8/362 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L+PK+V  +       PT IQ K IPL ++  D+ G ++TGTGKT +++LP   I
Sbjct: 5   FDTLNLNPKLVQGLKKLNINIPTEIQAKAIPLAMENKDIIGQSETGTGKTLAYLLP---I 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA--LLIGGIPFEAQNKKLE 120
            EK     R  + +IL PT ELA Q+ +  +    N N+ V    +IG    + Q +KL+
Sbjct: 62  FEKITTEKREMQAIILAPTHELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ +PGRIL+   + K+  + ++ +VIDE D++LD   +  ++ +       RQ 
Sbjct: 122 EKPHIIVGSPGRILELIKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQL 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+T+    ++++ +++ + ++V   ++  E I+H ++    ++ ++  +L++L+ 
Sbjct: 182 MLFSATITESTLNIAKDLMKDSEVVKVKEKNTVNENIKHLYIT--GEHRERIEILRKLIA 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +  K  I+F N+ + +      L+        I+G  ++  R K L +F+ G +Q++V
Sbjct: 240 ATNP-KRAIVFINRNEEIELTTLKLQYHKIKAYGIYGAAEKEQRKKALEDFRSGKVQILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +SDL+ARGLD+ D+ H+FN D+P   + Y+HR+GRTGRA + G A +++ +++   I   
Sbjct: 299 SSDLSARGLDVKDITHIFNLDLPENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRKY 358

Query: 361 EK 362
           EK
Sbjct: 359 EK 360


>gi|118097368|ref|XP_425202.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
           [Gallus gallus]
          Length = 617

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 199/361 (55%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G  +PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 178 FKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 237

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 238 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALCIGGMS 297

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + ++ G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 298 VKEQMETIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 357

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  I +N   + A +++   V    +Y K+
Sbjct: 358 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--ITINVGRAGAASLD---VVQEVEYVKE 412

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 413 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 472

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F++G   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 473 FRDGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 532

Query: 351 K 351
           K
Sbjct: 533 K 533


>gi|255729782|ref|XP_002549816.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240132885|gb|EER32442.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 571

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 126/376 (33%), Positives = 207/376 (55%), Gaps = 29/376 (7%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM----LTI 62
            ++ K++  +   G+ +PT IQ  +IPL L + DV G+A+TG+GKT SF++P+    L+I
Sbjct: 164 SINSKLISIIYKLGFNQPTSIQRASIPLSLIKRDVVGVAETGSGKTLSFLIPLFNYILSI 223

Query: 63  LE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            E   K    + MP  LIL PTRELA Q+    EK+ K     V  +IGG  +      +
Sbjct: 224 DENYIKYEKSLNMPMGLILAPTRELAIQITKEAEKFCKKLGYVVLSIIGGHQYSNTIDDI 283

Query: 120 ER-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
           ++ G  +++ TPGR++D  +R  + ++    L++DEADRM+DMGF   +  I S +P + 
Sbjct: 284 DKSGVHIIVATPGRLVDSIDRKIIDLSKCYYLIMDEADRMIDMGFEKDLNKIMSKLPNSD 343

Query: 178 ---------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
                          R T++F+AT++  ++K+++N+L +P  + +       + IE  F 
Sbjct: 344 QLSQTIDGRIFHLDKRSTMMFTATISPPIEKITKNYLIDPGYVYIGGAGEALDNIEQQFE 403

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
              +  S+     + +    + MKN      IIF N K    +L   L         IHG
Sbjct: 404 YLPSATSETTKFNKLMKYIGNHMKNTRNPLIIIFANFKHVCDSLSQELSSNHLDNVVIHG 463

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           +  Q +R   ++ F+    ++++A+D+AARG+DIP+V  V NF + N+ + YIHRIGRTG
Sbjct: 464 SKSQEARELAINQFRNHESEILIATDVAARGIDIPNVTLVINFQMVNKFDEYIHRIGRTG 523

Query: 338 RAGRHGKAFTLVAKED 353
           RAG  GK+FT ++++D
Sbjct: 524 RAGNKGKSFTFISEQD 539


>gi|30353749|gb|AAH51703.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Homo sapiens]
          Length = 631

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 129/393 (32%), Positives = 215/393 (54%), Gaps = 7/393 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK---G 66
           P ++ +++  G VKPTPIQ +  P++LQ  D+  +AQTGTGKT S+++P    L+     
Sbjct: 231 PDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS 290

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTRELA  V     KY     L    + GG     Q + + +G D++
Sbjct: 291 REQRNGPGMLVLTPTRELALHVEAECSKYSYK-GLKSICIYGGRNRNGQIEDISKGVDII 349

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + +I  LVIDEAD+MLDM F P I+ I   V   RQT++ SAT
Sbjct: 350 IATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSAT 409

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
             D +++++ ++L++P  + V   +  A  T++   + T  +  +K AL Q+ +++    
Sbjct: 410 WPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEK--EKRALTQEFVENMSPN 467

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F +QK    +L      QG S  ++HGN +Q  + + + +FK G I++++ +D+ 
Sbjct: 468 DKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIV 527

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLD+ DV HV+N+D P   + Y+HR+G  GR G+ G + TL+ + D K    + K+++
Sbjct: 528 SRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELIKILD 587

Query: 366 KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           +    +  DL  +    +     +H   R   P
Sbjct: 588 RANQSVPEDLVVMAEQYKLNQQKRHRETRSRKP 620


>gi|239982147|ref|ZP_04704671.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
          Length = 381

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 184/329 (55%), Gaps = 18/329 (5%)

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTREL  QV ++    GK  ++ V  + GG  +E Q + L +G DV++ TPGR+LD   +
Sbjct: 3   PTRELCQQVTNDLLTAGKVRDVRVLAIYGGRAYEPQVEALNKGVDVIVGTPGRLLDLAGQ 62

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
            KL + +++ LV+DEAD MLD+GF+P ++ I +++P  RQT+LFSATM   +  ++  ++
Sbjct: 63  RKLDLGHVKALVLDEADEMLDLGFLPDVERIVTMLPAKRQTMLFSATMPGAVIGLARRYM 122

Query: 200 QNPKRIEVNTPSSTAETI----EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
             P  I   +P     T+    +H F    A    K  L+ ++LQ++      +IFC  K
Sbjct: 123 TQPTHIRATSPDDEGATVANIAQHVF---RAHSMDKPELVSRILQAEG-RGLAMIFCRTK 178

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           +   ++   L+++GF+  A+HG++ Q +R + L  F+ G + ++V +D+AARG+D+  V 
Sbjct: 179 RTAADIAEQLQRRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVT 238

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDL 375
           HV N+  P   + Y+HRIGRTGRAGR G A TLV  +DI     I K +E          
Sbjct: 239 HVINYQTPEDEKTYLHRIGRTGRAGRAGIAITLVDWDDIPRWQLINKALE---------- 288

Query: 376 SSLNPPLEKIDIAQHNHARKNNPIPQKST 404
            + N P+E    + H +     P   K T
Sbjct: 289 LTFNDPVETYSTSPHLYEELRIPEGTKGT 317


>gi|303282327|ref|XP_003060455.1| DEAD/DEAH box helicase [Micromonas pusilla CCMP1545]
 gi|226457926|gb|EEH55224.1| DEAD/DEAH box helicase [Micromonas pusilla CCMP1545]
          Length = 671

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 203/357 (56%), Gaps = 23/357 (6%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML--TILEKGRARVRM---PR 74
           G  +PTPIQI+ +P++L   D+ GIA TG+GK+ +F+LPM+   ++E+ R  ++    P 
Sbjct: 243 GIARPTPIQIQGLPVILTGRDIIGIAFTGSGKSLTFILPMIMSAMMEERRMPLQGMEGPC 302

Query: 75  TLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIPFEAQNKKL-ERGADVLI 127
            LIL P+RELA Q  +  E +    +      + + L IGGI    Q+  + +RG  ++ 
Sbjct: 303 GLILCPSRELARQTHEVIEGFTVELSKQGMSEMRIMLCIGGIDSREQSDIVRDRGVHMVT 362

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+ D  +R ++ ++  + L +DEADRM+D+GF   I++I S     RQTLLFSATM
Sbjct: 363 ATPGRLKDLLHRKRMNLDICKYLCLDEADRMVDLGFEDDIRDIYSFFKSQRQTLLFSATM 422

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
             +++K +E+ L NP  I VN   + A  ++      Y +   K   L + LQ   T   
Sbjct: 423 PVKIRKFAESALVNP--IVVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK--TAPP 478

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            +IFC  K +V ++   L  +G    AIHG   Q  R   +S FK     ++VA+D+A +
Sbjct: 479 VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKGQDERDWGISEFKSERKDVLVATDVAGK 538

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-------DIKHI 357
           GLD P++ HV N+D+P   ENY+HRIGRTGR G+ G A T + K        D+KH+
Sbjct: 539 GLDFPNIQHVINYDMPEEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 595


>gi|291395377|ref|XP_002714089.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 4
           [Oryctolagus cuniculus]
          Length = 692

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 200/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++ +G    R   
Sbjct: 271 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHLMREGVTASRFKE 330

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 331 LQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVMYGGTQLGHSIRQIVQGCNILCAT 390

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 391 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 450

Query: 186 TMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL++    + V         ++   V    QYSK+  L++ L  + D 
Sbjct: 451 TFPEEIQRLAGEFLKSTYLFVAVGQVGGACRDVQQT-VVQIGQYSKREKLVEILRNTGD- 508

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 509 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 567

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 568 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNHL 620


>gi|68465332|ref|XP_723365.1| hypothetical protein CaO19.12334 [Candida albicans SC5314]
 gi|46445394|gb|EAL04663.1| hypothetical protein CaO19.12334 [Candida albicans SC5314]
          Length = 564

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 134/344 (38%), Positives = 201/344 (58%), Gaps = 12/344 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTLILE 79
           + KPTPIQ  + P +L   DV G+A+TG+GKT +F +P +  I+  G  +      L + 
Sbjct: 173 FDKPTPIQSVSWPFLLSGKDVIGVAETGSGKTFAFGVPAINNIITTGNTKTL--SVLCIS 230

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA Q+ DN  +   +  +    + GG+  + Q +KL + A+V++ TPGR++D  N 
Sbjct: 231 PTRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKL-KTANVVVATPGRLVDLIND 289

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQTLLFSATMTDELQKVSENF 198
           G + +  +  LV+DEADRML+ GF   I+ I S    + RQTL+F+AT   E+++++ NF
Sbjct: 290 GAINLGKVNYLVLDEADRMLEKGFEEDIKTIISNTSNSERQTLMFTATWPKEVRELANNF 349

Query: 199 LQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQL--LQSQDTMKNGI-IFCN 253
           + +P ++ V      S  + I    V    ++ K+  L+Q L    + ++  N I IF  
Sbjct: 350 MNSPVKVTVGDRDELSANKRITQV-VEVINKFDKEKKLIQLLRKYNANESSDNKILIFAL 408

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            KK    + + L++  FSV AIHG++ Q+ R   LS FK G   L++A+D+AARGLDIP+
Sbjct: 409 YKKEASRIENFLKRNRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPN 468

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           V  V N   P   E+Y+HRIGRTGRAG  G A TL   ED KH+
Sbjct: 469 VKVVINLTFPLTIEDYVHRIGRTGRAGAKGTAHTLFT-EDEKHL 511


>gi|302692692|ref|XP_003036025.1| hypothetical protein SCHCODRAFT_256129 [Schizophyllum commune H4-8]
 gi|300109721|gb|EFJ01123.1| hypothetical protein SCHCODRAFT_256129 [Schizophyllum commune H4-8]
          Length = 760

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 142/441 (32%), Positives = 213/441 (48%), Gaps = 59/441 (13%)

Query: 10  PKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK--- 65
           P  +  V++  GY +P+PIQ + IP+ LQ  D+ GIA+TG+GKTA+FV+P+L  +     
Sbjct: 323 PSSILDVIETIGYKEPSPIQRQAIPIGLQNRDIIGIAETGSGKTAAFVIPLLAFISAVAP 382

Query: 66  --GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
                R   P  LIL PTRELA Q+     K+      T   ++GG   E Q   L  GA
Sbjct: 383 LTDENRHLGPFALILAPTRELAQQIEVETRKFASGLGYTCVSIVGGRSVEEQQFNLREGA 442

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF------- 176
           +++I TPGR+ D   R  L+++    +V+DEADRM+ +GF P +  I   +P        
Sbjct: 443 EIIIATPGRLKDVLERHVLVLSQCRYVVMDEADRMVHLGFEPDLNFILDQLPAETMEGEE 502

Query: 177 -----------------------------------TRQTLLFSATMTDELQKVSENFLQN 201
                                              TR T LFSATM   +++++  +L+ 
Sbjct: 503 SGDMMVVDDNRKHRHDDHAMDIDGEQRMKLVKKGRTRVTTLFSATMPPAVERLARKYLRR 562

Query: 202 PKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNL 261
           P  I +       +T+E           KK  LL ++L S       I+F NQKK    +
Sbjct: 563 PAIITIGEAGRAVDTVEQRVEFVNGDEKKKHRLL-EILNSGQYPSPIIVFVNQKKMADMV 621

Query: 262 CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321
              L + G+S   +H   +Q  R   L++ + G   ++VA+DLA RG+D+ DV  V NF 
Sbjct: 622 AKDLGRAGWSASTLHSGKNQEQREAALASLRSGEADILVATDLAGRGIDVQDVSLVVNFQ 681

Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           +    E Y+HRIGRTGRAG+ G A T +  ED + +  +++ I K        +S +   
Sbjct: 682 MAGTIEAYVHRIGRTGRAGKLGTAITFLTNEDDEVMYDLKQEISK------SPVSKVPVE 735

Query: 382 LEKIDIAQH----NHARKNNP 398
           L K + AQH    +  RK +P
Sbjct: 736 LAKHEAAQHKVTRDMKRKRDP 756


>gi|326928431|ref|XP_003210383.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like
           [Meleagris gallopavo]
          Length = 604

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 199/361 (55%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G  +PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 165 FKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 224

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 225 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALCIGGMS 284

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + ++ G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 285 VKEQMETIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 344

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  I +N   + A +++   V    +Y K+
Sbjct: 345 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--ITINVGRAGAASLD---VVQEVEYVKE 399

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 400 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 459

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F++G   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 460 FRDGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 519

Query: 351 K 351
           K
Sbjct: 520 K 520


>gi|291395375|ref|XP_002714088.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3
           [Oryctolagus cuniculus]
          Length = 706

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 200/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++ +G    R   
Sbjct: 285 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHLMREGVTASRFKE 344

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 345 LQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVMYGGTQLGHSIRQIVQGCNILCAT 404

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 405 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 464

Query: 186 TMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL++    + V         ++   V    QYSK+  L++ L  + D 
Sbjct: 465 TFPEEIQRLAGEFLKSTYLFVAVGQVGGACRDVQQT-VVQIGQYSKREKLVEILRNTGD- 522

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 523 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 581

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 582 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNHL 634


>gi|328697425|ref|XP_003240334.1| PREDICTED: ATP-dependent RNA helicase p62-like isoform 2
           [Acyrthosiphon pisum]
          Length = 516

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 193/367 (52%), Gaps = 23/367 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +      V+  + + G+ +PTPIQ +  P+ +   ++ G+AQTG+GKT  + LP +  
Sbjct: 104 FKEANFPDYVMTVIRNEGFTEPTPIQAQGWPIAMSGKNMVGVAQTGSGKTLGYTLPAVVH 163

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L+KG      P  L+L PTRELA Q+      + ++  L    + GG P   Q 
Sbjct: 164 INNQEPLKKGDG----PIALVLAPTRELAQQIQKVAGLFNQSTYLRSTCIYGGAPKSHQA 219

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  G +++I TPGR+LD        +     LV+DEADRMLDMGF P I+ I   +  
Sbjct: 220 RDLMNGVEIVIATPGRLLDFLESRATNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRP 279

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKK 231
            RQ L++SAT   E+QK++ +FL +  ++ V + + +A     + ++ C      Q  +K
Sbjct: 280 DRQVLMWSATWPKEVQKLANDFLSDYIQLNVGSLTLSANHNILQNVDVC------QEHEK 333

Query: 232 CALLQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
              L  LLQ    M+    IIF   K+ V  +   +   G     IHG+  Q  R  +L 
Sbjct: 334 EDKLMDLLQDIANMEENKTIIFAETKRKVDTITRKITNMGARAVGIHGDKSQSERDHVLK 393

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+ G   ++VA+D+AARGLD+ DV  V NFD PN +E+YIHRIGRTGR+ + G ++   
Sbjct: 394 QFRGGRANILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSSQKGTSYAFF 453

Query: 350 AKEDIKH 356
              + K 
Sbjct: 454 THSNSKQ 460


>gi|157818683|ref|NP_001100290.1| probable ATP-dependent RNA helicase DDX10 [Rattus norvegicus]
 gi|149041670|gb|EDL95511.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 (predicted) [Rattus
           norvegicus]
          Length = 874

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 134/376 (35%), Positives = 215/376 (57%), Gaps = 20/376 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P+L  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 63  LEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     R++   T     LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +
Sbjct: 131 L----YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE 186

Query: 118 KLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++    ++L+CTPGR+L H +        N+++LV+DEADR+LDMGF   +  I   +P 
Sbjct: 187 RIN-NINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPK 245

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCAL 234
            RQTLLFSAT T  ++ ++   L++P+ + V+  +  ST  T+E  ++    +  +K ++
Sbjct: 246 KRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYI--ICELHQKISV 303

Query: 235 LQQLLQSQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           L   L+S  T K+ + F  C + + +  +   L + G S+ A+HG   Q  RM++ + F 
Sbjct: 304 LFSFLRSHLTKKSIVFFSSCKEVQYLYRVFCRL-RPGISILALHGRQQQMRRMEVYNEFV 362

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                ++ A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   
Sbjct: 363 RKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPS 422

Query: 353 DIKHIDAIEKLIEKKV 368
           + + +  +++L++KKV
Sbjct: 423 EEQGM--VQQLLQKKV 436


>gi|258651049|ref|YP_003200205.1| DEAD/DEAH box helicase domain-containing protein [Nakamurella
           multipartita DSM 44233]
 gi|258554274|gb|ACV77216.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM
           44233]
          Length = 392

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 122/350 (34%), Positives = 187/350 (53%), Gaps = 5/350 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+   ++ A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F +P++  
Sbjct: 15  FAELGVPTTLLPALTALGAPSPFPIQAATLPATLAGRDVLGRGKTGSGKTIAFAIPLVAR 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  GR     PR LIL PTRELA QVA   E   K   L   ++ GG+ +  Q   L  G
Sbjct: 75  LTGGRRVPNRPRGLILLPTRELALQVARTVEPLAKAAGLRTMVVFGGVGYGNQTAALRSG 134

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I  PGR+ D  N+    ++ IE+ V+DEAD M D+GF+P ++ +    P   Q LL
Sbjct: 135 VDIVIACPGRLEDLVNQRACDLSGIEVTVLDEADHMADLGFLPVVRRLLRATPKVGQRLL 194

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ + +  + + FL +P    V+  +S  E +EH   A  A    +  ++++L Q  
Sbjct: 195 FSATLDNGISVLVKEFLSDPILHAVDDETSPVEAMEHHIFAVDA--GNRAQVIRELAQGG 252

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K +       L K G     +HGN+ Q +R + L+ F  G+ +++VA+
Sbjct: 253 GRR---LLFTRTKHSAKKWAAQLTKNGIPAVDLHGNLSQNARERNLAAFSAGSAKVLVAT 309

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           D+AARG+ +  +  V + D P   + Y+HR GRT RAG  G   T++  E
Sbjct: 310 DIAARGIHVDGIELVVHLDPPTEHKAYLHRSGRTARAGAGGTVITVMLPE 359


>gi|227829832|ref|YP_002831611.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.S.2.15]
 gi|227456279|gb|ACP34966.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.S.2.15]
          Length = 360

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 126/357 (35%), Positives = 204/357 (57%), Gaps = 20/357 (5%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           LS  +  A+ +AGY+KPT +Q   IP ++    V   A+TG+GKTA++V+P+L       
Sbjct: 22  LSEDLRKALNEAGYIKPTRVQEVVIPELMNGKSVIVQAKTGSGKTAAYVIPILE------ 75

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
              R    LIL PTRELA Q+ D  +K GK   + V+L+IGG+ ++ Q     R + +++
Sbjct: 76  ---RNSTALILSPTRELATQILDEIKKLGKYKQIDVSLIIGGMSYDDQ-----RQSKIVV 127

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+LD +++GK+  +  + +++DEADRMLDMGFI  I+ I +     +    FSAT+
Sbjct: 128 GTPGRLLDLWSKGKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCN-AKIAGFFSATI 186

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
            DE+  +++ F ++ + I ++      E ++  FV     ++ K + L + +  +  +  
Sbjct: 187 PDEIMTLAKEFSKDLREIVLD-EYKPVEEVKQKFVKVRNDWNDKVSKLLEEINGEKIL-- 243

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
             +F   +     L + L+ +G +V  + G++ Q  R+K    FK+G   ++VA+DLA+R
Sbjct: 244 --VFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVATDLASR 301

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           G+DI DV  V NFD+P   E YIHR+GRTGR GR G+A T     +   I  I  L+
Sbjct: 302 GIDIIDVNKVINFDIPRDVETYIHRVGRTGRMGRVGQAITFYTFREADMIKRINNLL 358


>gi|156717218|ref|NP_001096151.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Xenopus (Silurana)
           tropicalis]
 gi|148921499|gb|AAI46616.1| ddx10 protein [Xenopus (Silurana) tropicalis]
          Length = 852

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 136/372 (36%), Positives = 206/372 (55%), Gaps = 12/372 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  +++  Y  PT IQ +TI L LQ  DV G A+TG+GKT +F++P L  
Sbjct: 75  FSDFPLSKKTLRGLVEGQYRLPTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFIIPALEC 134

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         LI+ PTRELA Q  +   K G+N+  +  L+IGG   + +   + R
Sbjct: 135 LYRQQWTSDDGLGVLIISPTRELAYQTFEVLRKVGRNHEFSAGLVIGGKDLKQETACIHR 194

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++LICTPGR+L H +       +N+++LV+DEADR+LDMGF   +  I   +P  RQT
Sbjct: 195 -TNILICTPGRLLQHMDETSTFHASNLQMLVLDEADRILDMGFADTMNAIVENLPKKRQT 253

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT T  ++ ++   L++P+ + V  N   ST  T+E  +V    Q  +K  LL   
Sbjct: 254 LLFSATQTKSVKDLARLSLKDPEYVWVHENAKFSTPATLEQNYVVCELQ--QKINLLYSF 311

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSL--EKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +++    K  I+F +  K V  L  +    + G  V  +HG   Q  RM++ ++F     
Sbjct: 312 IRNH-LKKKSIVFFSSCKEVQYLFRAFCRLRPGIPVLVLHGKQQQMKRMEVYNDFIRKKS 370

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++ A+D+AARGLD P V  V   D P  A  YIHR+GRT R    G+A  ++   ++K 
Sbjct: 371 AVLFATDIAARGLDFPAVNWVLQLDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEVKG 430

Query: 357 IDAIEKLIEKKV 368
           +   ++L EKKV
Sbjct: 431 M--FKQLEEKKV 440


>gi|126326670|ref|XP_001371368.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 879

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 134/380 (35%), Positives = 214/380 (56%), Gaps = 24/380 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P+L
Sbjct: 68  MRFSDFPLSRKTLKGLQEAQYRMVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 127

Query: 61  TILEKGRARVRMPRT-------LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       R+  T       LI+ PTRELA Q  +   K GKN++ +  L+IGG   +
Sbjct: 128 ETL------YRLQWTSADGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLK 181

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITS 172
            +++++ +  ++LICTPGR+L H +        N+++LV+DEADR+LDMGF   +  I  
Sbjct: 182 HESERINQ-INILICTPGRLLQHMDETTYFHATNLQMLVLDEADRILDMGFADTMNAIIE 240

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSK 230
            +P  RQTLLFSAT T  ++ ++   L++P  + V+  +  ST  T++  +V    +  +
Sbjct: 241 NLPKKRQTLLFSATQTKSVKDLARLSLKDPAYVWVHEKAKYSTPATLDQNYV--ICELHQ 298

Query: 231 KCALLQQLLQSQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           K ++L   L+S    K+ + F  C + + +  +   L + G S+ A+HG   Q  RM++ 
Sbjct: 299 KISVLYSFLKSHLKKKSIVFFASCKEVQYLFRVFCRL-RPGISILALHGKQQQMRRMEVY 357

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           + F      ++ A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G++  +
Sbjct: 358 NEFVRKKSAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEGGESLLI 417

Query: 349 VAKEDIKHIDAIEKLIEKKV 368
           +   ++K +  + +L ++KV
Sbjct: 418 LLPSEVKGM--VHQLSQRKV 435


>gi|207346902|gb|EDZ73254.1| YDL031Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 846

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 128/401 (31%), Positives = 211/401 (52%), Gaps = 53/401 (13%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ +PTPIQ KTIPL+LQ  D+ G+A+TG+GKTA+F+LPM+  L+    ++   R +IL 
Sbjct: 7   GFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEKLKSHSGKI-GARAVILS 65

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           P+RELA Q  + F+ + +   L   LL GG   E Q   +    DV+I TPGR L     
Sbjct: 66  PSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFLHLKVE 125

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
             L + ++E +V DEADR+ +MGF   +  + + +P TRQTLLFSAT+ + L    +  L
Sbjct: 126 MNLDLKSVEYVVFDEADRLFEMGFQEQLNELLASLPTTRQTLLFSATLPNSLVDFVKAGL 185

Query: 200 QNPKRIEVNTPSSTAETIEHCFV-----------------------ATYAQYSK------ 230
            NP  + ++  +  +E +E  F+                       AT  Q  K      
Sbjct: 186 VNPVLVRLDAETKVSENLEMLFLSSKNADREANLLYILQEIIKIPLATSEQLQKLQNSNN 245

Query: 231 --------------------KCALLQQLLQSQDTM---KNGIIFCNQKKNVVNLCHSLEK 267
                               K    +Q + + + +   K  I+F   + +V  +   L  
Sbjct: 246 EADSDSDDENDRQKKRRNFKKEKFRKQKMPAANELPSEKATILFVPTRHHVEYISQLLRD 305

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            G+ +  I+G +DQ +R + L NF+ G   ++V +D+AARG+DIP + +V N+ +P  ++
Sbjct: 306 CGYLISYIYGTLDQHARKRQLYNFRAGLTSILVVTDVAARGVDIPMLANVINYTLPGSSK 365

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            ++HR+GRT RAG  G A+++VA+ ++ ++  +E  + +K+
Sbjct: 366 IFVHRVGRTARAGNKGWAYSIVAENELPYLLDLELFLGEKI 406


>gi|303317020|ref|XP_003068512.1| ATP-dependent RNA helicase DBP8, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240108193|gb|EER26367.1| ATP-dependent RNA helicase DBP8, putative [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 536

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 137/386 (35%), Positives = 217/386 (56%), Gaps = 24/386 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL+P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F  P+L  
Sbjct: 108 FSSLGLAPWLVGSLSAMAIRRPTAIQRACIPEILKGRDCIGGSRTGSGKTVAFAAPILHR 167

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             +    +     ++L PTRELA Q+ + F+      +L   L+ GG     Q   L   
Sbjct: 168 WSEDPFGIF---AVVLTPTRELALQIFEQFKAISAPQSLKPVLITGGSEMRPQAIALSTR 224

Query: 123 ADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSLVP 175
             V+I TPGR+ DH           +N + ++V+DEADR+L  G    +P ++   S VP
Sbjct: 225 PHVVIATPGRLADHIKTSGQDTIYGLNRVRMVVLDEADRLLASGPGSMLPDVETCLSAVP 284

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRI-----EVNTPSSTA--ETIEHCFVATYA 226
              +RQTLLF+AT+T E++ + ++  ++  R+     E++T ++T    T++ C++    
Sbjct: 285 SSTSRQTLLFTATVTPEVRAL-KSMPRSKDRLHIFVTEISTENNTTIPPTLKQCYL--QV 341

Query: 227 QYSKKCALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
             + + A L  LL +  ++ K  IIFCN+ K    L   L + G  V ++H  + Q  R 
Sbjct: 342 PMTHREAFLHVLLSTDANSSKPAIIFCNRTKTADLLDRLLRRLGHRVTSLHSLLPQSERT 401

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L+ F+    +L+VA+D+AARGLDIP VG V NFDVP   ++YIHR+GRT RAGR G+A
Sbjct: 402 SNLARFRASAARLLVATDVAARGLDIPSVGLVVNFDVPRNPDDYIHRVGRTARAGREGEA 461

Query: 346 FTLVAKEDIKHIDAIEKLIEKK-VDW 370
            TLV + D++ + AIE+ + ++ V W
Sbjct: 462 ITLVGQRDVQLVLAIEERVGRQMVAW 487


>gi|39104531|dbj|BAC98030.2| mKIAA0801 protein [Mus musculus]
          Length = 1044

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 143/448 (31%), Positives = 234/448 (52%), Gaps = 32/448 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 391 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 450

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+G      P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q 
Sbjct: 451 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 506

Query: 117 KKLERGADVLICTPGRILDHF--NRGK--LLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
            +L+RGA++++CTPGR++D    N GK  +      +L +      LDM F+     I  
Sbjct: 507 AELKRGAEIIVCTPGRMIDMLAANSGKSRVFYYLFSLLFV------LDMIFVEADLRIVD 560

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKK 231
            V   RQT++FSAT    ++ ++   L  P  ++V   S     +E    V    +   K
Sbjct: 561 NVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLK 620

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L    Q   ++   IIF +++++   L   L +  +   ++HG IDQ  R  I+++F
Sbjct: 621 LLELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDF 677

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + +
Sbjct: 678 KNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITE 737

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           +  ++   I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +  
Sbjct: 738 DQARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGF 790

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQEND 439
            +   +  +   E +K+ K    +Q++D
Sbjct: 791 KFDETEQALA-NERKKLQKAALGLQDSD 817


>gi|291395373|ref|XP_002714087.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2
           [Oryctolagus cuniculus]
          Length = 701

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 205/368 (55%), Gaps = 14/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 262 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 321

Query: 61  T-ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++ +G    R      P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 322 AHLMREGVTASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVMYGGTQLGH 381

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S  
Sbjct: 382 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 441

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +E+Q+++  FL++    + V         ++   V    QYS
Sbjct: 442 GMPSKEQRQTLMFSATFPEEIQRLAGEFLKSTYLFVAVGQVGGACRDVQQT-VVQIGQYS 500

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  L++ L  + D  +  ++F   KK    +   L ++  S  +IHG+ +QR R + L 
Sbjct: 501 KREKLVEILRNTGD--ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALG 558

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +  
Sbjct: 559 DFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFF 618

Query: 350 AKEDIKHI 357
             E   H+
Sbjct: 619 DPESDNHL 626


>gi|255940232|ref|XP_002560885.1| Pc16g05440 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585508|emb|CAP93214.1| Pc16g05440 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1162

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 205/373 (54%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  + +  V   G+   T IQ + IP ++   DV G+A+TG+GKT +F++PM   
Sbjct: 522 WSQCGLGVQTLDVVHKLGWESLTSIQAQAIPTIMSGRDVIGVAKTGSGKTGAFLVPMFRH 581

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++  R  A    P ++IL PTRELA Q+  + + + +   L      GG P + Q  +L+
Sbjct: 582 IKDQRPLASTDGPISMILAPTRELATQIHKDCKPFLRALGLRAVCAYGGAPIKDQIAELK 641

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CT GR++D    N+G++L +  I  +V+DE DRM DMGF P +  I + +   
Sbjct: 642 RGAEIIVCTAGRLIDLLAANQGRVLNLRRITYVVLDEGDRMFDMGFGPQVVKIMASIRPD 701

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT    ++ ++   L +P  I V   S  A  I    V       K   LL+ 
Sbjct: 702 RQTVLFSATFPKSMEALARKTLNDPVEITVGGKSVVAREITQ-IVEVRNNDQKFFRLLEL 760

Query: 238 L--LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L  L   D  ++   +IF ++++   +L   L  +G+   +IHG  DQ  R   +  FK 
Sbjct: 761 LGNLYEDDANEDYRTLIFVDRQEAADDLLKQLMYKGYPCMSIHGGKDQIDRDSTIQEFKA 820

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T V +E 
Sbjct: 821 GVFPILVATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFVTEEQ 880

Query: 354 IKHIDAIEKLIEK 366
            ++   I K +++
Sbjct: 881 DRYALDIAKALKQ 893


>gi|291395371|ref|XP_002714086.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1
           [Oryctolagus cuniculus]
          Length = 729

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 200/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++ +G    R   
Sbjct: 305 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHLMREGVTASRFKE 364

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 365 LQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVMYGGTQLGHSIRQIVQGCNILCAT 424

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 425 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 484

Query: 186 TMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL++    + V         ++   V    QYSK+  L++ L  + D 
Sbjct: 485 TFPEEIQRLAGEFLKSTYLFVAVGQVGGACRDVQQT-VVQIGQYSKREKLVEILRNTGD- 542

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 543 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 601

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 602 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNHL 654


>gi|294141707|ref|YP_003557685.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293328176|dbj|BAJ02907.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 352

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 127/354 (35%), Positives = 198/354 (55%), Gaps = 7/354 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L  +++  +   G   PT IQ + IP+ L   D+   ++TG+GKT +F+LP +
Sbjct: 1   MQFTDFSLDKRLLDTLDHMGIETPTEIQQQAIPVGLSGKDLMASSKTGSGKTLAFLLPAM 60

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   RA  +  PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRIISTRALSKKDPRVLILLPTRELANQVYGQLRLLVANTQYKAMKILGGENFNDQAKLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            R    ++ TPGR+ DH  +  L +N +E+L++DEADRMLD+GF   ++ I       R 
Sbjct: 121 ARDPHFVVATPGRLADHLAQHHLHLNGLELLILDEADRMLDLGFAEQLKAINKAADHKRR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQ 236
           QTL+FSAT+   ++  ++   L++P+ ++V   +    +  +  ++A +  +  K ALL+
Sbjct: 181 QTLMFSATLDHGQINDIAAELLKSPEHVDVGAGNIENLDITQRIYLADHLDH--KEALLE 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +L ++ T K  IIF   +++   L   L   G    ++ GN+ Q +R +I+  F  G  
Sbjct: 239 SILNNE-THKQIIIFTATREDTDRLATKLAASGHKTASLSGNLKQSARNQIMDQFSRGLQ 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           +++V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV 
Sbjct: 298 KILVTTDIASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVG 351


>gi|239978905|ref|ZP_04701429.1| putative DEAD-box RNA helicase [Streptomyces albus J1074]
 gi|291450788|ref|ZP_06590178.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291353737|gb|EFE80639.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
          Length = 538

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 121/355 (34%), Positives = 186/355 (52%), Gaps = 4/355 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L L   ++ A+   G  +P PIQ  T+P  L   D+ G  +TG+GKT +F L +L  
Sbjct: 80  FAELELPEPLLTALAAEGMAEPFPIQAATLPNSLAGRDILGRGRTGSGKTLAFGLALLAR 139

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA    P  L+L PTRELA QV D    Y K   L +A ++GG+    Q   L RG
Sbjct: 140 TAGRRAEAGAPLALVLVPTRELAQQVTDALTPYAKALGLRMATVVGGLSLNKQASALRRG 199

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +V++ TPGR+ D  +RG   ++ + + V+DEAD+M DMGF+P +  +        Q +L
Sbjct: 200 TEVVVATPGRLKDLLDRGDCRLDQVAVSVLDEADQMTDMGFMPQVTALLDRTAPDGQRML 259

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++   +L +P    V+  +    T+EH  +       KK   L+  + ++
Sbjct: 260 FSATLDRNIDRLVRGYLSDPVVHSVDPSAGAVTTMEHHVLYVADDTDKKAVALR--IAAR 317

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D     I+F + K++       L   G    A+HG   Q  R + L  FK G +  +VA+
Sbjct: 318 D--GRVIMFVDTKRSADRFAKRLLANGVRASALHGGRSQPQRNRTLEQFKNGQVTALVAT 375

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++AARG+ + D+  V N D P   ++Y+HR GRT RAG  G   TLV  E+ + +
Sbjct: 376 NVAARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPEEKREM 430


>gi|223590136|sp|A5DF03|PRP28_PICGU RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|190345810|gb|EDK37756.2| hypothetical protein PGUG_01854 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 575

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 131/413 (31%), Positives = 218/413 (52%), Gaps = 46/413 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + G+   ++  +   GY +PTPIQ   IP  L   DV GIA+TG+GKT +F++P+L+ 
Sbjct: 152 WKESGIPTTLLNTIDQLGYKEPTPIQRAAIPTALGHRDVVGIAETGSGKTLAFLIPLLSY 211

Query: 63  LE-----------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
           L            K  + +     L+L PTRELA Q++   +K+       V  +IGG  
Sbjct: 212 LSAIDKDYMEVEHKQESNLNKVLGLVLAPTRELALQISKEAKKFASVLGYNVVTIIGGHQ 271

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E   K ++ GA +++ TPGR++D   +G + ++    L +DEADRM+DMGF   +Q+I 
Sbjct: 272 YEETVKSVQDGAHIVVATPGRLIDSAEKGLIDLSQCYHLTMDEADRMIDMGFEKALQSIL 331

Query: 172 SLVPFT----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
           S +P T                R TL+F+AT++  ++K+++++LQ P  + +       +
Sbjct: 332 SFLPSTSSSGFGLDSTIFKVKSRITLMFTATISPPIEKITKDYLQTPAYLYIGDAGEIVD 391

Query: 216 TIEHCF------VATYAQYSKK------CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
            I   F      V +  + +         AL Q + +++  +   IIF N K+    L  
Sbjct: 392 NINQKFEYLGDNVDSQEELNAPRTNKMISALRQHIRETEQPLI--IIFANFKRTCELLSV 449

Query: 264 SLEKQGF-SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322
            L  Q   S   IHG+  Q +R   +++F+E  + +++A+D+AARG+DIP+V  V N+ +
Sbjct: 450 ELSNQNVGSNIVIHGSKSQEARESAIASFREHKVNVLIATDVAARGIDIPNVSLVVNYHM 509

Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV----DWL 371
           P R + YIHRIGRTGRAG+ G + + V   D + +  ++  + K      DWL
Sbjct: 510 PKRFDEYIHRIGRTGRAGKSGASLSFVDDGDSEILVNLKSFLSKGTKRLPDWL 562


>gi|146161285|ref|XP_977099.2| Type III restriction enzyme, res subunit family protein
           [Tetrahymena thermophila]
 gi|146146797|gb|EAR86377.2| Type III restriction enzyme, res subunit family protein
           [Tetrahymena thermophila SB210]
          Length = 440

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 151/456 (33%), Positives = 247/456 (54%), Gaps = 43/456 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   +       GY  PT IQ   IP +L++  V   A+TG+GKTA+F  P+L  
Sbjct: 4   FAKLGLDSWIQKTCDKVGYQNPTKIQELAIPPLLRKQHVIANAETGSGKTATFAFPILQD 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K    V     ++L   RELA Q+++ F  +G + NL V+ L+GG+ F  Q  +LER 
Sbjct: 64  LAKDPFGVF---AIVLTANRELAMQISEQFTIFGSSLNLRVSTLVGGVDFNKQLSELERI 120

Query: 123 ADVLICTPGRILDHFNRGKLL---MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             +++ TPGR LD  ++  +L   + N++ LV+DEADR+ +   I  IQ+I   +P  +Q
Sbjct: 121 PHIVVGTPGRTLDMIDKSPVLKEYIENVKYLVLDEADRLFEDSIIEDIQSILEFIPQEKQ 180

Query: 180 TLLFSATMTDEL--QKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +L +AT+ D+   +K++E    N K  R  VN      +T++  FV           L+
Sbjct: 181 IILATATINDDFNDKKLNEILKTNVKFERFCVNQQKKVVQTLKQKFV-----------LV 229

Query: 236 QQLLQSQDTMK--------NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
            ++++ Q+ +         + IIF N+ +    +   L +  FS  ++H  + Q  R+  
Sbjct: 230 PEMVKDQNFINLLNKFKGISMIIFVNKCRTCHFINALLNQLEFSSTSLHSGLKQGQRISH 289

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L  FK     ++VA+D+A+RGLDIP V  V N+D+P  +++YIHR+GRT R G+ G A +
Sbjct: 290 LKTFKSQAANILVATDVASRGLDIPTVDLVINYDIPKNSDDYIHRVGRTARKGKRGLAIS 349

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA-QHNHARKNNPIPQKSTG- 405
           ++ + D++ I  IEK I +K++ L  D        E ++IA + N A+K   I     G 
Sbjct: 350 IMTQYDVQLILNIEKNIGEKLEELKVDEE------EALEIAPKVNKAKKFVKIKMSEDGS 403

Query: 406 ---FDRRKKNYSSQKSHIPLKESEKISKLQQD-IQE 437
              FD+++++  S K  I  +E +K+ K++ + IQE
Sbjct: 404 SENFDKQEQDKKSYKEFI--REQKKLKKVENNKIQE 437


>gi|84495604|ref|ZP_00994723.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
 gi|84385097|gb|EAQ00977.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
          Length = 514

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 118/357 (33%), Positives = 186/357 (52%), Gaps = 7/357 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+   +V  + +   + PTPIQ  T+P  L   DV G  +TG+GKT +F+LPML  
Sbjct: 20  FGRLGVPESLVRVLAERDILSPTPIQAATLPDSLAGRDVLGRGRTGSGKTYAFLLPMLAR 79

Query: 63  LEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L  G  R + + PR LIL PTRELA Q+ +      +   +T   + GG+    Q   + 
Sbjct: 80  LSAGGTRRQAKRPRALILAPTRELAIQIDEALAPLAQPLGITSKTVFGGVGQGPQVNAIT 139

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++  PGR+ D  N+G ++++ +EI ++DEAD M D+GF+P ++ I    P   Q 
Sbjct: 140 RGVDVVVACPGRLEDLMNQGHVILDAVEITILDEADHMADLGFLPVVKRILDKTPRNGQR 199

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+   +  + + +L +P   E ++  S   T+ H     +  +      LQ L  
Sbjct: 200 MLFSATLDAGVNTLVKRYLNSPVTHEADSAQSPVSTMSH-----HVLHVTTDGHLQVLRD 254

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F   K     +   L  +G     +HGN+ Q +R + +  F  GT   +V
Sbjct: 255 LTAAPGRKVVFTRTKHRAKKIARQLNAEGIPAVELHGNLSQNARTRTMDAFHAGTAHTLV 314

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           A+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   TL+  + ++ +
Sbjct: 315 ATDIAARGIHVDDVSLVIHADPPVEHKAYLHRSGRTARAGNSGTVVTLMTDDQVRDV 371


>gi|126134609|ref|XP_001383829.1| ATP-dependent RNA helicase CA3 of the DEAD/DEAH box family
           [Scheffersomyces stipitis CBS 6054]
 gi|146286101|sp|A3LRW2|DBP3_PICST RecName: Full=ATP-dependent RNA helicase DBP3
 gi|126095978|gb|ABN65800.1| ATP-dependent RNA helicase CA3 of the DEAD/DEAH box family
           [Scheffersomyces stipitis CBS 6054]
          Length = 526

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 134/365 (36%), Positives = 202/365 (55%), Gaps = 13/365 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  + L+ K+   V    +  PTPIQ    P +L   DV G+A+TG+GKT +F +P +
Sbjct: 118 LSFDQIQLNSKISAVV--NKFPTPTPIQSVAWPYLLSGKDVIGVAETGSGKTFAFGVPAI 175

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             IL  G++ + +   L + PTRELA+Q+ DN      N N+    + GG+P   Q K L
Sbjct: 176 NNILTLGKSGLSV---LCISPTRELASQIYDNLVDLTSNTNVKCVCVYGGVPKHDQVKNL 232

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTR 178
            + A+V++ TPGR+LD    G + +  ++ LV+DEADRML+ GF   I+ I        R
Sbjct: 233 -KNANVVVATPGRLLDLIEDGAVNLGTVDYLVLDEADRMLETGFEDAIKAIIGGTKKENR 291

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQ 237
           QTL+F+AT   E++K++  F+  P ++ +      A        V     + K+  LL  
Sbjct: 292 QTLMFTATWPQEVRKLASTFMNQPVKVSIGDRDELAANKRITQIVEVIEPFDKEKKLLGL 351

Query: 238 LLQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L Q Q   K     +IF   KK    +   L +  ++V AIHG++ Q+ R   L++FK+G
Sbjct: 352 LRQYQSGSKKNDKVLIFALYKKEATRIEGLLRRNSYNVAAIHGDLSQQQRTNALNSFKKG 411

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              L++A+D+AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG+ G A TL  + + 
Sbjct: 412 ESSLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEHE- 470

Query: 355 KHIDA 359
           KH+  
Sbjct: 471 KHLSG 475


>gi|183231239|ref|XP_650493.2| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|169802550|gb|EAL45107.2| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 722

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 121/368 (32%), Positives = 206/368 (55%), Gaps = 11/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           +++ G++P  +  +    Y KP+P+Q + IP+++  +D    A+TG+GKT ++ +P++  
Sbjct: 142 WSECGINPITMDVIKALKYEKPSPVQRQAIPVIMSGYDAIVCAKTGSGKTLAYTIPLIKH 201

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + ++  ++   P  ++  P RELA Q+     K+GK  N+    + GG     Q   L+
Sbjct: 202 VMAQRPLSKGEGPIGIVFAPIRELAEQINTEINKFGKYLNIRSVAVFGGTGISNQIGALK 261

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RG ++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P I+ I   +   
Sbjct: 262 RGTEIVVCTPGRMIDILVTNNGRITNLRRVTFVVLDEADRMFDMGFGPQIKRIIEGIRPD 321

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +Q ++FSAT    +++ +  FL+ P  I     S  + TIE   +    +  KK   L  
Sbjct: 322 KQIVMFSATFPISVEQHAREFLKKPIEIICGGRSQVSNTIEQ--IVEVIETKKKIERLIS 379

Query: 238 LLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++  Q+  K G  IIF   +KN   L  +L ++  +   +HG IDQ  R   +  FK G 
Sbjct: 380 IVLEQNN-KGGRIIIFTETQKNCDELYQNLMERNINCLLLHGGIDQIDRQNTIQEFKSGI 438

Query: 296 IQ-LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + +++ + L ARGLD+  +  V N+D PN  E+Y+HR+GRTGRAG+ GKA T + KE+ 
Sbjct: 439 GRTILITTSLCARGLDVKGLELVINYDCPNHLEDYVHRVGRTGRAGKRGKAITFITKEEE 498

Query: 355 KHIDAIEK 362
           ++ + I K
Sbjct: 499 RYSEDIVK 506


>gi|326514620|dbj|BAJ96297.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 873

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 130/357 (36%), Positives = 197/357 (55%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +V   V   GY  PTPIQ K +PL+L   DV  +A+TG+GKTA+F++PML  
Sbjct: 68  FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGLDVAAMARTGSGKTAAFLVPMLQ- 126

Query: 63  LEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               R R R P    R LIL PTR+LA Q      + GK  +L   L++GG   E+Q + 
Sbjct: 127 ----RLRHRDPGAGIRALILSPTRDLATQTLKFTHQLGKFTDLKTGLIVGGGSMESQFEV 182

Query: 119 LERGADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L    D++I TPGR +   +    L + ++E +V DEAD +  +GF   +  I   +  T
Sbjct: 183 LADNPDIVIATPGRFVHILSMVDDLSLRSVEYVVFDEADSLFSLGFAEQLHKILHKLSDT 242

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM   L + ++  L++P+ I ++     +  ++  F  T  Q  K  ALL  
Sbjct: 243 RQTLLFSATMPKALAEFAKAGLRDPQVIRLDLDKKISPDLKLAFF-TLRQEEKLAALLYL 301

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + +   + +  +IF + K +V  L     ++G      +G +DQ +R   +S F+     
Sbjct: 302 VREHISSEEQTMIFVSTKYHVEFLNILFREEGLEASLSYGAMDQEARTIHISRFRARKTM 361

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           L++ +D+AARGLDIP + +V N+D P + + ++HR+GR  R GR G AFT V  ED+
Sbjct: 362 LLIVTDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRTGTAFTFVTSEDM 418


>gi|326504194|dbj|BAJ90929.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 873

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 130/357 (36%), Positives = 197/357 (55%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +V   V   GY  PTPIQ K +PL+L   DV  +A+TG+GKTA+F++PML  
Sbjct: 68  FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGLDVAAMARTGSGKTAAFLVPMLQ- 126

Query: 63  LEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               R R R P    R LIL PTR+LA Q      + GK  +L   L++GG   E+Q + 
Sbjct: 127 ----RLRHRDPGAGIRALILSPTRDLATQTLKFTHQLGKFTDLKTGLIVGGGSMESQFEV 182

Query: 119 LERGADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L    D++I TPGR +   +    L + ++E +V DEAD +  +GF   +  I   +  T
Sbjct: 183 LADNPDIVIATPGRFVHILSMVDDLSLRSVEYVVFDEADSLFSLGFAEQLHKILHKLSDT 242

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM   L + ++  L++P+ I ++     +  ++  F  T  Q  K  ALL  
Sbjct: 243 RQTLLFSATMPKALAEFAKAGLRDPQVIRLDLDKKISPDLKLAFF-TLRQEEKLAALLYL 301

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + +   + +  +IF + K +V  L     ++G      +G +DQ +R   +S F+     
Sbjct: 302 VREHISSEEQTMIFVSTKYHVEFLNILFREEGLEASLSYGAMDQEARTIHISRFRARKTM 361

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           L++ +D+AARGLDIP + +V N+D P + + ++HR+GR  R GR G AFT V  ED+
Sbjct: 362 LLIVTDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRTGTAFTFVTSEDM 418


>gi|159117282|ref|XP_001708861.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
 gi|157436975|gb|EDO81187.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
          Length = 450

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 132/395 (33%), Positives = 212/395 (53%), Gaps = 20/395 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH--DVCGIAQTGTGKTASFVLP 58
           M F DLG+ P+++ A+   G+++PT IQ + + +V      DV G+A+TG+GKT +F +P
Sbjct: 1   MLFRDLGVCPELLDALERIGWLEPTAIQKEMLTVVSHNKACDVVGVAETGSGKTGAFAIP 60

Query: 59  MLT-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L  +LE+G   V+   T++L PTRELA Q    F   GK++ L   L+IGG+    Q K
Sbjct: 61  ALQDLLERG-TNVKGVHTVVLSPTRELAVQTFSVFRDLGKDFGLRTGLVIGGVDLMQQRK 119

Query: 118 KLERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            L +   VLICTPGR++DH    +   + ++  L+IDEAD+ML+      + N+    P 
Sbjct: 120 TLAQQPHVLICTPGRLVDHLATTEGFSLKSLRFLIIDEADKMLEQDMGRAVLNLAKDCPQ 179

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIE-----HCFVATYAQYS 229
            R+T LFSAT    +Q +        +   I+V   +  A  ++        V      S
Sbjct: 180 RRRTFLFSATFPSAVQALQNECTDRSRLVHIQVGVLTKAASDVDGSTNTQLAVVDNELLS 239

Query: 230 KKCALLQQ--------LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
            K  +L          +L +       ++F  +   V  L   L   GF V  +HG++ Q
Sbjct: 240 HKMVVLPHAEKQLGLVVLLNNHAACQIMVFATKISTVTKLALMLTTLGFEVGVVHGSMGQ 299

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
             R++ L+ F++G  ++++ASD+A RG+DIP+V  V N+D+P  + +Y+HR GRT RAGR
Sbjct: 300 DKRLEELNRFRQGEHKILLASDVAGRGIDIPNVDLVINYDLPVASRDYVHRAGRTARAGR 359

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
            G A T+V + D+ +   IE ++  +++    D S
Sbjct: 360 RGTALTIVTQYDVVNFKRIEAMLGIRMEPYTPDFS 394


>gi|146294034|ref|YP_001184458.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145565724|gb|ABP76659.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 438

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 136/372 (36%), Positives = 209/372 (56%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGL+  ++ A L A    PT +Q   IP +L   DV  +AQTG+GKT +F LP+L
Sbjct: 20  LTFTKLGLNSALIKA-LPAMLQCPTLVQQLAIPAILAGRDVLALAQTGSGKTLAFGLPLL 78

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNK 117
            ++LE+    +   + L+L PTRELA QV    +   +  +  + +  L GG+  + Q  
Sbjct: 79  QSVLEQQAQALITAQALVLVPTRELAQQVTLVLQAVAQPLSGAMKIQTLCGGVDIDNQLI 138

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L     +L+ TPGRILD   +  + +++I+ LV+DEADR+L+MGF P +Q + +L+P  
Sbjct: 139 ELAERPQILVATPGRILDLCKQSHITLDSIKHLVLDEADRLLEMGFWPDVQKLIALMPKH 198

Query: 178 RQTLLFSATMTDELQKVSENFLQN-PKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           +QTLLFSAT+ + L  ++   L N P R++ +  +S    IE        + SK  AL+ 
Sbjct: 199 KQTLLFSATLPEALDTLASQLLINDPLRVQAHKANSVVPHIEEQLYLVN-KGSKTQALIA 257

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L Q Q      ++F + + +   +   L K G  V A+HG  DQ  R + L++FK   I
Sbjct: 258 LLKQYQ--WPQVLVFISARDDADAVAKRLAKAGMKVAALHGEKDQTVRSQTLADFKAKRI 315

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+DL ARG+ I  +  V N D+P  A  Y+HRIGRT RAG  G A +LV   ++  
Sbjct: 316 QILVATDLMARGIHIDALPVVVNLDLPMSAPVYVHRIGRTARAGTKGLAISLVCHGEMAT 375

Query: 357 IDAIEKLIEKKV 368
           +  I  L E+ +
Sbjct: 376 LTTIRGLTERAL 387


>gi|62896755|dbj|BAD96318.1| DEAD-box protein abstrakt variant [Homo sapiens]
          Length = 622

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 197/361 (54%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 183 FKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 242

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 243 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMS 302

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 303 VKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 362

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + +N   + A +++   V    +Y K+
Sbjct: 363 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKE 417

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGNATTFIN 537

Query: 351 K 351
           K
Sbjct: 538 K 538


>gi|302410479|ref|XP_003003073.1| ATP-dependent RNA helicase DBP2 [Verticillium albo-atrum VaMs.102]
 gi|261358097|gb|EEY20525.1| ATP-dependent RNA helicase DBP2 [Verticillium albo-atrum VaMs.102]
          Length = 577

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 131/398 (32%), Positives = 204/398 (51%), Gaps = 46/398 (11%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEK 65
           V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP +       +L  
Sbjct: 146 VIDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAP 205

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
           G      P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L RG +V
Sbjct: 206 GDG----PIVLVLAPTRELAVQIQQEIAKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEV 261

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
            I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +   +QT+++SA
Sbjct: 262 CIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDKQTVMWSA 321

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           T   E++ ++ +FL +  ++ + +    A       V   ++  K+  +++ L ++ +  
Sbjct: 322 TWPKEVRALASDFLDDFIQVNIGSMDLAANHRITQIVEVVSESEKRDRMIKHLEKAMENK 381

Query: 246 KN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
           +N  ++F   K+    +   L + G+   +IHG+  Q  R  +L  FK G   +MVA+D+
Sbjct: 382 ENKALVFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDV 441

Query: 305 AARGL----------------------------------DIPDVGHVFNFDVPNRAENYI 330
           A+RG+                                  D+ ++ HV N+D PN +E+YI
Sbjct: 442 ASRGIVKDTARCIRLSSPVPCWNVATQTPVTRMLTRLPQDVRNITHVINYDYPNNSEDYI 501

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHI-DAIEKLIEKK 367
           HRIGRTGRAG  G A TL   ++ K   D +  L E K
Sbjct: 502 HRIGRTGRAGATGTAITLFTTDNSKQARDLVNVLREAK 539


>gi|227503665|ref|ZP_03933714.1| possible ATP-dependent RNA helicase [Corynebacterium accolens ATCC
           49725]
 gi|227075701|gb|EEI13664.1| possible ATP-dependent RNA helicase [Corynebacterium accolens ATCC
           49725]
          Length = 435

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 132/394 (33%), Positives = 205/394 (52%), Gaps = 7/394 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL  +VV  + D G  +  PIQ   IP VL   DV G   TG+GKT +F LP L  
Sbjct: 4   FAELGLPQRVVHVLNDQGITEAFPIQAAAIPDVLAGKDVLGRGPTGSGKTFTFGLPTLAR 63

Query: 63  LE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   G +    PR ++L PTRELA Q+    ++      L V  ++GG+      + L R
Sbjct: 64  LAGSGASTPGHPRAVVLAPTRELATQIQQRLDEPATALGLRVLAVVGGVNINHHIRSLAR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+L+ TPGR  D   +G+L  + ++I  +DEAD+M DMGF+P ++ + +  P T Q L
Sbjct: 124 PVDLLVATPGRAQDLIAQGRLSFDKVQITTLDEADQMADMGFLPQVRKLLNYTPPTGQRL 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ K+ E FL +P        ++  E++ H       + ++   +++   ++
Sbjct: 184 LFSATLDGDVNKLVEQFLHDPVVHSTAPVTAAVESMSHHLFFVGDRPARNEVVMRIAARA 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I+F   K  V      L + G +   +HG+  Q +R + +S F + +I ++VA
Sbjct: 244 GKT----IMFMRTKHGVDRQVKKLRRVGINAYPLHGDKGQGARTRAISGFADRSIPVLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI DV  V + D P   + Y+HR GRT R G  G   TLV  E    + A+ 
Sbjct: 300 TDIAARGIDIADVSLVVHVDPPAEHKAYLHRAGRTARGGATGTVVTLVTDEQRSEVAALI 359

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           K  +  V+    D+S  + P    ++     ARK
Sbjct: 360 K--KAGVNATEYDISHRDNPAGAPELRTVTGARK 391


>gi|302334881|ref|YP_003800088.1| DEAD/DEAH box helicase domain protein [Olsenella uli DSM 7084]
 gi|301318721|gb|ADK67208.1| DEAD/DEAH box helicase domain protein [Olsenella uli DSM 7084]
          Length = 554

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 174/304 (57%), Gaps = 9/304 (2%)

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
           P  LI+ PTRELAAQ+        +       +++GG  FE Q + LE G D+L+ TPGR
Sbjct: 207 PFALIVTPTRELAAQIEGVVTTVCEQTGQRAVVVMGGAKFERQIRGLESGCDLLVATPGR 266

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           ++D    G + + ++ +LV+DEADRMLDMGF P ++ I    P  RQTLLFSAT+   ++
Sbjct: 267 LIDLMEHGHVSLKDVHVLVLDEADRMLDMGFWPSVRRIVKECPDERQTLLFSATIPPSIK 326

Query: 193 KVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQSQDTM----KN 247
              +  L++P  IEV     TA+T+ EH    T  Q   K  LL+ LL +        + 
Sbjct: 327 GTVDAMLKDPVVIEVAHVGETADTVEEHLCPVTQGQ---KTQLLEALLSAGGAAGVQPER 383

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            ++FC  K    +L   L+  G S   +H +  QR+R + L  F+ GT Q++VA+D+ +R
Sbjct: 384 VLVFCRTKHRADDLDKRLKSAGISADVMHADRPQRARERALEKFRAGTCQVLVATDVMSR 443

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           G+D+  +  V N+DVP   E+Y+HRIGRTGRAG  G A+T VA ++I  +  IE   +K 
Sbjct: 444 GIDVSGIDAVVNYDVPMDPEDYVHRIGRTGRAGATGHAYTFVAPDEISPLREIEYFTKKL 503

Query: 368 VD-W 370
           V  W
Sbjct: 504 VPVW 507



 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 43/62 (69%)

Query: 3  FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
          FA+LGL+  ++  V   G+ +PTP+Q + IP +L   DV   AQTGTGKTA+F LP+L +
Sbjct: 5  FAELGLNEHILAGVDALGFTRPTPVQAQAIPEILAGRDVLASAQTGTGKTAAFALPVLQL 64

Query: 63 LE 64
          +E
Sbjct: 65 IE 66


>gi|148686462|gb|EDL18409.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Mus musculus]
          Length = 715

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 200/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP+VL   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 289 IAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKE 348

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG  F    +++ +G ++L  T
Sbjct: 349 LQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSVRQIVQGCNILCAT 408

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  ++ LV+DEADRMLDMGF P ++ + S         RQTLLFSA
Sbjct: 409 PGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLLFSA 468

Query: 186 TMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++ +FL++    + V         ++   +    QYSK+  L++ L    D 
Sbjct: 469 TFPEEIQRLAGDFLKSSYLFVAVGQVGGACRDVQQTILQV-GQYSKREKLVEILRNIGD- 526

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 527 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 585

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    +   H+
Sbjct: 586 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTDSDNHL 638


>gi|33859536|ref|NP_034159.1| probable ATP-dependent RNA helicase DDX4 isoform 2 [Mus musculus]
 gi|20141439|sp|Q61496|DDX4_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Mvh; AltName:
           Full=Vasa homolog
 gi|12852922|dbj|BAB29578.1| unnamed protein product [Mus musculus]
          Length = 702

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 200/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP+VL   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 276 IAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKE 335

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG  F    +++ +G ++L  T
Sbjct: 336 LQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSVRQIVQGCNILCAT 395

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  ++ LV+DEADRMLDMGF P ++ + S         RQTLLFSA
Sbjct: 396 PGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLLFSA 455

Query: 186 TMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++ +FL++    + V         ++   +    QYSK+  L++ L    D 
Sbjct: 456 TFPEEIQRLAGDFLKSSYLFVAVGQVGGACRDVQQTILQV-GQYSKREKLVEILRNIGD- 513

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 514 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 572

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    +   H+
Sbjct: 573 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTDSDNHL 625


>gi|330793454|ref|XP_003284799.1| hypothetical protein DICPUDRAFT_28243 [Dictyostelium purpureum]
 gi|325085293|gb|EGC38703.1| hypothetical protein DICPUDRAFT_28243 [Dictyostelium purpureum]
          Length = 558

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 193/354 (54%), Gaps = 16/354 (4%)

Query: 10  PKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
           P+ +  VLD  G  KP+PIQ++ +P+VL   D+ GIA TG+GKT  F LPM+    +   
Sbjct: 117 PRSIIQVLDKKGIKKPSPIQMQGLPVVLSGRDMIGIAYTGSGKTLVFTLPMVLFALEEEK 176

Query: 69  RVRM-----PRTLILEPTRELAAQVADNFEKYGKNY------NLTVALLIGGIPFEAQNK 117
           ++ +     P  LIL P+RELA Q  D    +  +        L   L IGGI    Q +
Sbjct: 177 KLPIIQGEGPFGLILSPSRELARQTYDLVNSFTDSLAKDGFPKLRTLLAIGGIDMREQEQ 236

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              +G  +++ TPGR+L+   + K+  N  + L +DEADR++D GF   I+++       
Sbjct: 237 VFRKGIHMIVATPGRLLELLQKKKINFNLCKYLGLDEADRLIDFGFEDDIRSVLDHFTNQ 296

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM  ++Q+ + + L  P  +EVN   + A  +       + +   K   L +
Sbjct: 297 RQTLLFSATMPKKIQEFARSALVLP--VEVNVGRAGAANLNVTQEVEFVKPEAKIVYLLE 354

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            LQ   T    +IFC  KK+V ++   L  +     +IHG+  Q  R   +  F+EG   
Sbjct: 355 CLQK--TPPPVLIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQEEREGAIKAFREGKKD 412

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           ++VA+D+A++GLD PD+ HV NFD+P   ENYIHRIGRTGR G  G A T + K
Sbjct: 413 VLVATDVASKGLDFPDIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTFINK 466


>gi|146420455|ref|XP_001486183.1| hypothetical protein PGUG_01854 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 575

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 131/413 (31%), Positives = 218/413 (52%), Gaps = 46/413 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + G+   ++  +   GY +PTPIQ   IP  L   DV GIA+TG+GKT +F++P+L+ 
Sbjct: 152 WKESGIPTTLLNTIDQLGYKEPTPIQRAAIPTALGHRDVVGIAETGSGKTLAFLIPLLSY 211

Query: 63  LE-----------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
           L            K  + +     L+L PTRELA Q++   +K+       V  +IGG  
Sbjct: 212 LSAIDKDYMEVEHKQESNLNKVLGLVLAPTRELALQISKEAKKFASVLGYNVVTIIGGHQ 271

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E   K ++ GA +++ TPGR++D   +G + ++    L +DEADRM+DMGF   +Q+I 
Sbjct: 272 YEETVKSVQDGAHIVVATPGRLIDSAEKGLIDLSQCYHLTMDEADRMIDMGFEKALQSIL 331

Query: 172 SLVPFT----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
           S +P T                R TL+F+AT++  ++K+++++LQ P  + +       +
Sbjct: 332 SFLPSTSSSGFGLDSTIFKVKSRITLMFTATISPPIEKITKDYLQTPAYLYIGDAGEIVD 391

Query: 216 TIEHCF------VATYAQYSKK------CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
            I   F      V +  + +         AL Q + +++  +   IIF N K+    L  
Sbjct: 392 NINQKFEYLGDNVDSQEELNAPRTNKMILALRQHIRETEQPLI--IIFANFKRTCELLSV 449

Query: 264 SLEKQGF-SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322
            L  Q   S   IHG+  Q +R   +++F+E  + +++A+D+AARG+DIP+V  V N+ +
Sbjct: 450 ELSNQNVGSNIVIHGSKSQEARESAIASFREHKVNVLIATDVAARGIDIPNVSLVVNYHM 509

Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV----DWL 371
           P R + YIHRIGRTGRAG+ G + + V   D + +  ++  + K      DWL
Sbjct: 510 PKRFDEYIHRIGRTGRAGKSGASLSFVDDGDSEILVNLKSFLSKGTKRLPDWL 562


>gi|15898827|ref|NP_343432.1| ATP-dependent RNA helicase [Sulfolobus solfataricus P2]
 gi|229578785|ref|YP_002837183.1| DEAD/DEAH box helicase [Sulfolobus islandicus Y.G.57.14]
 gi|238619197|ref|YP_002914022.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.4]
 gi|284997087|ref|YP_003418854.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.D.8.5]
 gi|13815318|gb|AAK42222.1| ATP-dependent RNA helicase [Sulfolobus solfataricus P2]
 gi|228009499|gb|ACP45261.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           Y.G.57.14]
 gi|238380266|gb|ACR41354.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.4]
 gi|284444982|gb|ADB86484.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.D.8.5]
          Length = 360

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 126/357 (35%), Positives = 204/357 (57%), Gaps = 20/357 (5%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           LS  +  A+ +AGY+KPT +Q   IP ++    V   A+TG+GKTA++V+P+L       
Sbjct: 22  LSEDLRKALNEAGYIKPTRVQEVVIPELMNGKSVIVQAKTGSGKTAAYVIPILE------ 75

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
              R    LIL PTRELA Q+ D  +K GK   + V+L+IGG+ ++ Q     R + +++
Sbjct: 76  ---RNSTALILSPTRELATQILDEIKKLGKYKQIDVSLIIGGMSYDDQ-----RQSKIVV 127

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+LD +++GK+  +  + +++DEADRMLDMGFI  I+ I +     +    FSAT+
Sbjct: 128 GTPGRLLDLWSKGKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCN-AKIAGFFSATI 186

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
            DE+  +++ F ++ + I ++      E ++  FV     ++ K + L + +  +  +  
Sbjct: 187 PDEIMTLAKEFSKDLREIVLD-EYKPVEEVKQKFVKVRNDWNDKVSKLLEEINGEKIL-- 243

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
             +F   +     L + L+ +G +V  + G++ Q  R+K    FK+G   ++VA+DLA+R
Sbjct: 244 --VFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVATDLASR 301

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           G+DI DV  V NFD+P   E YIHR+GRTGR GR G+A T     +   I  I  L+
Sbjct: 302 GIDIIDVNKVINFDIPRDVETYIHRVGRTGRMGRVGQAITFYTFREADMIKRINNLL 358


>gi|326526589|dbj|BAJ97311.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 880

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 130/357 (36%), Positives = 197/357 (55%), Gaps = 11/357 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +V   V   GY  PTPIQ K +PL+L   DV  +A+TG+GKTA+F++PML  
Sbjct: 75  FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGLDVAAMARTGSGKTAAFLVPMLQ- 133

Query: 63  LEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               R R R P    R LIL PTR+LA Q      + GK  +L   L++GG   E+Q + 
Sbjct: 134 ----RLRHRDPGAGIRALILSPTRDLATQTLKFTHQLGKFTDLKTGLIVGGGSMESQFEV 189

Query: 119 LERGADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L    D++I TPGR +   +    L + ++E +V DEAD +  +GF   +  I   +  T
Sbjct: 190 LADNPDIVIATPGRFVHILSMVDDLSLRSVEYVVFDEADSLFSLGFAEQLHKILHKLSDT 249

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM   L + ++  L++P+ I ++     +  ++  F  T  Q  K  ALL  
Sbjct: 250 RQTLLFSATMPKALAEFAKAGLRDPQVIRLDLDKKISPDLKLAFF-TLRQEEKLAALLYL 308

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + +   + +  +IF + K +V  L     ++G      +G +DQ +R   +S F+     
Sbjct: 309 VREHISSEEQTMIFVSTKYHVEFLNILFREEGLEASLSYGAMDQEARTIHISRFRARKTM 368

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           L++ +D+AARGLDIP + +V N+D P + + ++HR+GR  R GR G AFT V  ED+
Sbjct: 369 LLIVTDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRTGTAFTFVTSEDM 425


>gi|239930667|ref|ZP_04687620.1| DEAD-box RNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291439029|ref|ZP_06578419.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291341924|gb|EFE68880.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 496

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 121/347 (34%), Positives = 187/347 (53%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +  +++ A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 71  FADLDMPTELLAALGSQGVTAPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 130

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA    P  L+L PTRELA QV D    Y ++  L +A ++GG+P   Q   L RG
Sbjct: 131 TAGQRAEAGQPLGLVLVPTRELAQQVTDALTPYARSVKLRLATVVGGMPISRQAGALRRG 190

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A++++ TPGR+ D   RG   ++ + + V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 191 AEIVVATPGRLKDLIERGDCRLDQVVVTVLDEADQMADMGFMPQVTALLDQVRPQGQRML 250

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  ++   T+EH  +  +   + K A + ++    
Sbjct: 251 FSATLDRNVDLLVRRYLSDPVVHSVDPSAAAVTTMEHHVL--HVHGADKHAAITEIAARD 308

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F + K  V  L   L K G    ++HG   Q  R + L+ FK G + ++VA+
Sbjct: 309 GRV---IMFLDTKHAVDRLTEHLLKSGVRAASLHGGKSQPQRTRTLTQFKNGHVNVLVAT 365

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARG+ +  +  V N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 366 NVAARGIHVDSLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLV 412


>gi|168000763|ref|XP_001753085.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695784|gb|EDQ82126.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 638

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 126/363 (34%), Positives = 204/363 (56%), Gaps = 12/363 (3%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-- 63
           LG+S  +V A+   G     PIQ   +   ++  D+   A+TGTGKT +F +P++  +  
Sbjct: 31  LGVSEDIVNALAKRGITHLFPIQRAVLEPAMKGQDLIARAKTGTGKTLAFGIPIIQHIID 90

Query: 64  ---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E      R PR L+L PTRELA QV   F +      L+   + GG+    Q ++LE
Sbjct: 91  AHKESAPRHGRSPRALVLAPTRELAKQVEREFMESAPM--LSTVCVYGGVSISMQQRQLE 148

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+ + TPGRI+D  +RG L + N+  LV+DEAD+ML +GF   ++ I   +P  RQ+
Sbjct: 149 RGVDIAVGTPGRIIDLIDRGSLKLQNVNFLVLDEADQMLAVGFEEDVERILQQLPKNRQS 208

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +LFSATM   ++++S  +L  P  I +  +     AE I +  +   A  + K ++L  L
Sbjct: 209 MLFSATMPKWVKELSGKYLNRPLMINLVGDADDKLAEGITNLAIQLPA--TAKRSILSDL 266

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +         I+F   K++  ++  ++     +  A+HG+I Q  R K L+ F+EG I +
Sbjct: 267 ITVHAKGGKTIVFTQTKRDADDVAMAMGNL-VACGALHGDISQLQREKTLNAFREGNITV 325

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+P+V  V ++++PN +E ++HR GRTGRAG+ G    +   + ++ + 
Sbjct: 326 LVATDVAARGLDVPNVDLVIHYEIPNDSETFVHRTGRTGRAGKTGTNILMFTNQQMRTMR 385

Query: 359 AIE 361
            IE
Sbjct: 386 TIE 388


>gi|550331|emb|CAA57418.1| putative RNA helicase [Dictyostelium discoideum]
          Length = 566

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 122/384 (31%), Positives = 202/384 (52%), Gaps = 38/384 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  L  +++ A+   GY KP+PIQ+++IP+ L   D+ GIA+TG+GKT +FV+PML  
Sbjct: 147 WQESNLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPMLIY 206

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + K            P  L++ PTREL  Q+      + +++   V  L+GG   E Q  
Sbjct: 207 ISKQPRLTKDTEADGPYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGGQSIEDQAY 266

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           ++ +G +++I TPGR+ D   +  L++N    +V+DEAD M+D+GF P + ++   +P +
Sbjct: 267 QVSKGCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQVTSVLDAMPSS 326

Query: 178 ---------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
                                R T+LFSATM   ++K+S+ +L+ P  I +       + 
Sbjct: 327 FLKSEDDEMAEKQESDRSHIYRTTILFSATMPPLVEKLSKKYLRRPCTITIGEAGKVVDR 386

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNG-----IIFCNQKKNVVNLCHSLEKQGFS 271
           I    +   ++  KK  L Q        +K+G     IIF N+KK+   +   LE+   S
Sbjct: 387 IRQTVIFVKSENDKKEHLTQ-------LIKDGPPPPIIIFVNKKKHCDIIAPVLEECRVS 439

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
              +H    Q  R   L  FK+   ++++A+ +A+RG+ +  V HV NFD+P   E+Y H
Sbjct: 440 YTILHSGRSQEQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIPKNIEDYTH 499

Query: 332 RIGRTGRAGRHGKAFTLVAKEDIK 355
           RIGRTGRAG  G A + +  +D++
Sbjct: 500 RIGRTGRAGSAGLASSFITDKDVE 523


>gi|322806015|emb|CBZ03582.1| ATP-dependent RNA helicase YfmL [Clostridium botulinum H04402 065]
          Length = 421

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 114/362 (31%), Positives = 208/362 (57%), Gaps = 8/362 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L+PK+V  +       PT IQ K IPL ++  D+ G ++TGTGKT +++LP   I
Sbjct: 5   FDTLNLNPKLVQGLKKLNINIPTEIQAKAIPLAMENKDIIGQSETGTGKTLAYLLP---I 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA--LLIGGIPFEAQNKKLE 120
            EK     R  + +IL PT ELA Q+ +  +    N N+ V    +IG    + Q +KL+
Sbjct: 62  FEKITTEKREMQAIILAPTHELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ +PGRIL+   + K+  + ++ +VIDE D++LD   +  ++ +       RQ 
Sbjct: 122 EKPHIIVGSPGRILELIKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQL 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+T+    ++++ +++ + ++V   ++  E I+H ++    ++ ++  +L++L+ 
Sbjct: 182 MLFSATITESTLNIAKDLMKDSEVVKVKEKNTVNENIKHLYIT--GEHRERIEILRKLIA 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +  K  I+F N+ + +      L+        I+G  ++  R K L +F+ G +Q++V
Sbjct: 240 ATNP-KRAIVFINRNEEIELTTLKLQYHKIKAYGIYGAAEKEQRKKALEDFRLGKVQILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +SDL+ARGLD+ DV H+FN D+P   + Y+HR+GRTGRA + G A +++ +++   I   
Sbjct: 299 SSDLSARGLDVKDVTHIFNLDLPENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRKY 358

Query: 361 EK 362
           EK
Sbjct: 359 EK 360


>gi|328697427|ref|XP_001946984.2| PREDICTED: ATP-dependent RNA helicase p62-like isoform 1
           [Acyrthosiphon pisum]
          Length = 551

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 193/367 (52%), Gaps = 23/367 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F +      V+  + + G+ +PTPIQ +  P+ +   ++ G+AQTG+GKT  + LP +  
Sbjct: 139 FKEANFPDYVMTVIRNEGFTEPTPIQAQGWPIAMSGKNMVGVAQTGSGKTLGYTLPAVVH 198

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L+KG      P  L+L PTRELA Q+      + ++  L    + GG P   Q 
Sbjct: 199 INNQEPLKKGDG----PIALVLAPTRELAQQIQKVAGLFNQSTYLRSTCIYGGAPKSHQA 254

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  G +++I TPGR+LD        +     LV+DEADRMLDMGF P I+ I   +  
Sbjct: 255 RDLMNGVEIVIATPGRLLDFLESRATNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRP 314

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKK 231
            RQ L++SAT   E+QK++ +FL +  ++ V + + +A     + ++ C      Q  +K
Sbjct: 315 DRQVLMWSATWPKEVQKLANDFLSDYIQLNVGSLTLSANHNILQNVDVC------QEHEK 368

Query: 232 CALLQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
              L  LLQ    M+    IIF   K+ V  +   +   G     IHG+  Q  R  +L 
Sbjct: 369 EDKLMDLLQDIANMEENKTIIFAETKRKVDTITRKITNMGARAVGIHGDKSQSERDHVLK 428

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+ G   ++VA+D+AARGLD+ DV  V NFD PN +E+YIHRIGRTGR+ + G ++   
Sbjct: 429 QFRGGRANILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSSQKGTSYAFF 488

Query: 350 AKEDIKH 356
              + K 
Sbjct: 489 THSNSKQ 495


>gi|151942219|gb|EDN60575.1| RNA helicase [Saccharomyces cerevisiae YJM789]
          Length = 588

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 141/402 (35%), Positives = 216/402 (53%), Gaps = 31/402 (7%)

Query: 2   DFADLGLSPKVVCAVL--DAGYVKPTPIQIKTIPLVL---QRHDVCGIAQTGTGKTASFV 56
           ++ +L + P+ +  V+  +  +  PTPIQ  TIP V    Q  D  G+A TG+GKT +FV
Sbjct: 173 NWEELNIIPRDLLRVIIQELRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFV 232

Query: 57  LPMLTILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGK------NYNLTVA 104
           +P+L  + +   R      +  P+ LIL PTREL  Q+    +K  K      NY+  V 
Sbjct: 233 IPILIKMSRSPPRPPSLKIIDGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVI 292

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
            ++GG   E  +  L  G D+L+ TPGR++D      L+M  +E LV+DEAD+M+D+GF 
Sbjct: 293 SIVGGHSLEEISFSLSEGCDILVATPGRLIDSLENHLLVMKQVETLVLDEADKMIDLGFE 352

Query: 165 PYIQNITSLV------PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
             + NI + V         RQTL+F+ATMT  ++K++  ++Q P    +   + +   I+
Sbjct: 353 DQVTNILTKVDINADSAVNRQTLMFTATMTPVIEKIAAGYMQKPVYATIGVETGSEPLIQ 412

Query: 219 HCFVATYAQYSK-KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ-GFSVCAIH 276
              V  YA   + K   L+ ++   D     IIF N K+    L    +K+    V  +H
Sbjct: 413 Q--VVEYADNDEDKFKKLKPIVAKYDPPI--IIFINYKQTADWLAEKFQKETNMKVTILH 468

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G+  Q  R   L  F+   +Q+M+A+++AARGLDIP+V  V NF +  + ++YIHRIGRT
Sbjct: 469 GSKSQEQREHSLQLFRTNKVQIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRT 528

Query: 337 GRAGRHGKAFTLV-AKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
           GRA   G A + V A ED   I  + K + +K D LN ++ S
Sbjct: 529 GRAANEGSAVSFVSAAEDESLIRELYKYV-RKHDPLNSNIFS 569


>gi|308802996|ref|XP_003078811.1| putative RNA helicase (ISS) [Ostreococcus tauri]
 gi|116057264|emb|CAL51691.1| putative RNA helicase (ISS) [Ostreococcus tauri]
          Length = 693

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 132/369 (35%), Positives = 205/369 (55%), Gaps = 16/369 (4%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK- 65
           GL+  V   +   GY     IQ +T+ + L   DV G A+TG GKT +FVLP++ ++ K 
Sbjct: 87  GLTDPVKTTLRKKGYDALFQIQAETLEIALGGRDVVGRARTGCGKTLAFVLPIIELMAKM 146

Query: 66  -------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                   R + R P  ++L PTRELA QV  +F+  G +Y      + GG P+  Q   
Sbjct: 147 SPMPANGRRVQGRRPMCVVLAPTRELAKQVFADFDWIGNSYGFKSLCVYGGAPYREQEMG 206

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D++I TPGR+ DH  R  L+M +++  V+DEAD ML+MGF+  ++ I        
Sbjct: 207 LRSGVDIVIGTPGRMKDHLERKTLMMTDLKFRVLDEADEMLNMGFVDDVETILK-SSGDV 265

Query: 179 QTLLFSATMTDELQKVSENFLQ-NPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALL 235
           QTLLFSAT+   ++ +S+ FL+ N   +++  +     +  ++H  +    Q+S +  L+
Sbjct: 266 QTLLFSATLPSWVKDISKRFLKPNYSTVDLVGDEKQKASGAVQHMLLP--CQWSDRVDLV 323

Query: 236 QQLLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQ-GFSVCAIHGNIDQRSRMKILSNFKE 293
             +++S+       I+FC+ K++   LC +L+K+      A+HG++ Q  R  +LS F+E
Sbjct: 324 CDVIRSKAPGGGRVIVFCDTKRDCGELCDNLQKEIPKGAKALHGDVSQSQREVVLSLFRE 383

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
              Q++VA+D+AARGLDI  V  V   + P  AE YIHR GRTGRAG  G + TL    +
Sbjct: 384 DKFQVLVATDVAARGLDITGVELVIQCEPPKDAETYIHRSGRTGRAGATGISVTLCTPRN 443

Query: 354 IKHIDAIEK 362
              +  IE+
Sbjct: 444 EWAVPNIER 452


>gi|66272268|gb|AAH96386.1| ddx10 protein [Xenopus (Silurana) tropicalis]
          Length = 700

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 136/372 (36%), Positives = 206/372 (55%), Gaps = 12/372 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  +++  Y  PT IQ +TI L LQ  DV G A+TG+GKT +F++P L  
Sbjct: 71  FSDFPLSKKTLRGLVEGQYRLPTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFIIPALEC 130

Query: 63  LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         LI+ PTRELA Q  +   K G+N+  +  L+IGG   + +   + R
Sbjct: 131 LYRQQWTSDDGLGVLIISPTRELAYQTFEVLRKVGRNHEFSAGLVIGGKDLKQETACIHR 190

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++LICTPGR+L H +       +N+++LV+DEADR+LDMGF   +  I   +P  RQT
Sbjct: 191 -TNILICTPGRLLQHMDETSTFHASNLQMLVLDEADRILDMGFADTMNAIVENLPKKRQT 249

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT T  ++ ++   L++P+ + V  N   ST  T+E  +V    Q  +K  LL   
Sbjct: 250 LLFSATQTKSVKDLARLSLKDPEYVWVHENAKFSTPATLEQNYVVCELQ--QKINLLYSF 307

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSL--EKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +++    K  I+F +  K V  L  +    + G  V  +HG   Q  RM++ ++F     
Sbjct: 308 IRNH-LKKKSIVFFSSCKEVQYLFRAFCRLRPGIPVLVLHGKQQQMKRMEVYNDFIRKKS 366

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++ A+D+AARGLD P V  V   D P  A  YIHR+GRT R    G+A  ++   ++K 
Sbjct: 367 AVLFATDIAARGLDFPAVNWVLQLDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEVKG 426

Query: 357 IDAIEKLIEKKV 368
           +   ++L EKKV
Sbjct: 427 M--FKQLEEKKV 436


>gi|225007636|ref|NP_001139357.1| probable ATP-dependent RNA helicase DDX4 isoform 1 [Mus musculus]
 gi|74223562|dbj|BAE21618.1| unnamed protein product [Mus musculus]
 gi|187950715|gb|AAI37602.1| Ddx4 protein [Mus musculus]
 gi|219519729|gb|AAI44761.1| Ddx4 protein [Mus musculus]
          Length = 728

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 200/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP+VL   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 302 IAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKE 361

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG  F    +++ +G ++L  T
Sbjct: 362 LQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSVRQIVQGCNILCAT 421

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  ++ LV+DEADRMLDMGF P ++ + S         RQTLLFSA
Sbjct: 422 PGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLLFSA 481

Query: 186 TMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++ +FL++    + V         ++   +    QYSK+  L++ L    D 
Sbjct: 482 TFPEEIQRLAGDFLKSSYLFVAVGQVGGACRDVQQTILQV-GQYSKREKLVEILRNIGD- 539

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 540 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 598

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    +   H+
Sbjct: 599 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTDSDNHL 651


>gi|320588377|gb|EFX00846.1| eukaryotic translation initiation factor [Grosmannia clavigera
           kw1407]
          Length = 396

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 134/376 (35%), Positives = 213/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L P ++  +   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F    +++
Sbjct: 25  FDDMNLKPDLLRGIYAYGFERPSAIQQRAIIPVIKNHDVIAQAQSGTGKTATF---SISV 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    V+  + LIL PTRELA Q+       G   N+     IGG       K L+ G
Sbjct: 82  LQKIDTNVKQCQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVREDMKALQDG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + +++ V+DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 142 PQVVVGTPGRVQDMIQRRFLKTDAMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 202 LSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 260

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A+
Sbjct: 261 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIAT 319

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 320 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 379

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 380 FYSTQIEEMPMNVADL 395


>gi|149919487|ref|ZP_01907967.1| DEAD/DEAH box helicase [Plesiocystis pacifica SIR-1]
 gi|149819612|gb|EDM79039.1| DEAD/DEAH box helicase [Plesiocystis pacifica SIR-1]
          Length = 1390

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 122/349 (34%), Positives = 193/349 (55%), Gaps = 4/349 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           + ++ L   V  AV  AG+  PT +Q +T   ++Q  DV   +QTG+GKT +F LP L  
Sbjct: 158 WDEMALPEHVRNAVDAAGWTAPTKVQARTYETMIQGTDVLVQSQTGSGKTGAFCLPWLAN 217

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             + G A     + ++L PTRELA QV +   +      + V  + GG     Q   L R
Sbjct: 218 RFQPGDAAETGVQLIVLLPTRELAKQVCNELVRLAIETPVDVLPVYGGTAMNPQLDALAR 277

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G   ++ TPGR+LDH  R  L ++ +  +V+DE D ML MGF+  I+ I    P  RQT 
Sbjct: 278 GVHAVVGTPGRVLDHIRRKSLDLSKVRTVVLDECDEMLSMGFLEDIRAILRACPKERQTC 337

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ +++   ++ P+ I ++     A  I H F +T    S K   L  ++  
Sbjct: 338 LFSATVPRDIARIARRDMREPEHIVLSGDDIAAAEIYHGFYSTGG--SIKTRDLVDMIIV 395

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     ++FCN ++    +   L+K G+S  A+  ++ Q +R  ++  F++  ++ +VA
Sbjct: 396 EDPAA-AMVFCNTREETRLVASVLQKNGYSAHALSSDLTQAAREHVMGLFRDRKLRFLVA 454

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           +D+AARG+D+  V HV N+  P  AENY+HR GRTGRAGR G A ++V+
Sbjct: 455 TDVAARGIDVSHVSHVINYSFPENAENYVHRTGRTGRAGRPGVALSIVS 503


>gi|221123568|ref|XP_002167666.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Hydra magnipapillata]
          Length = 635

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 138/357 (38%), Positives = 206/357 (57%), Gaps = 25/357 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF++  +S K V  ++  G  K  P+Q  T   +L   DV   A+TGTGKT  F LP+L 
Sbjct: 52  DFSNFKISKKTVKKLIANGVNKLFPVQYTTYNAILDGSDVIVQARTGTGKTLGFALPVLE 111

Query: 62  ILEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L+      + + P  L L PTRELA Q+    EKY K   +T++   GG P++ Q ++L
Sbjct: 112 KLKNIDSEQKRKSPLVLTLAPTRELAIQICKEVEKY-KPRQMTISCFYGGAPYDKQEQEL 170

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D L+ TPGRILDH N+G+L ++ ++ +++DEADRM+DMGF   ++ I S   +T  
Sbjct: 171 RNGIDFLVGTPGRILDHINKGRLDVSKLQYVILDEADRMMDMGFQESMEEILSYA-YTED 229

Query: 179 ---QTLLFSATMTDELQKVSENFL-QNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKC 232
              QTLLFSAT+   LQK SE +L +N K+ ++     +  A T+EH   A    Y  + 
Sbjct: 230 NKPQTLLFSATVPAWLQKNSEKYLTKNLKKFDLIGRDKNKGATTVEH--KAIKCTYWDRP 287

Query: 233 ALLQQLLQSQDTMKNG--IIFCNQKKN----VVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           + ++ ++Q Q + K G  IIF + K+      +N   +++ Q      +HG+I Q+ R  
Sbjct: 288 STIKDIIQ-QYSGKFGKTIIFTSTKQEANELALNSVINMDSQ-----VLHGDIQQKQREL 341

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
            L +F+ G    ++A+D+AARGLDIP+V  V   + P   ++YIHR GRTGRAGR G
Sbjct: 342 TLQSFRNGKFNCLIATDVAARGLDIPEVDLVIQTEPPKDVDSYIHRAGRTGRAGRKG 398


>gi|149244076|ref|XP_001526581.1| eukaryotic initiation factor 4A [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152032533|sp|A5DVM3|IF4A_LODEL RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|146448975|gb|EDK43231.1| eukaryotic initiation factor 4A [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 397

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 134/376 (35%), Positives = 203/376 (53%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L P +V  +   GY  P+ IQ + I  + +  DV   AQ+GTGKTA+F +  L  
Sbjct: 25  FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQR 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++     +  + LIL PTRELA Q+ +     G   N+TV   IGG       +  + G
Sbjct: 85  IDENE---KSTQALILAPTRELALQIKNVITSIGLYLNVTVHASIGGTSMSDDIEAFKSG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ D   R     + +++ ++DEAD ML  GF   I NI  L+P T Q +L
Sbjct: 142 VQIVVGTPGRVFDMIERRYFRTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQVVL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+ NP RI V     T E I+  F+    +  K   L+   L   
Sbjct: 202 LSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQYFINVEVEDYKFDCLVD--LYDS 259

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            ++   +IFCN +  V  L + L +Q F+V AIH ++ Q  R  I+  F+ G+ ++++++
Sbjct: 260 ISVTQAVIFCNTRSKVEFLTNKLREQKFTVSAIHADLPQGERDTIMKEFRSGSSRILIST 319

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D+  +  IEK
Sbjct: 320 DLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDKDVGMMREIEK 379

Query: 363 LIEKKVDWLNGDLSSL 378
               ++  +  D+ SL
Sbjct: 380 FYSTQITEMPADIGSL 395


>gi|326523907|dbj|BAJ96964.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 414

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 200/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 43  FDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G    +    LIL PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 103 LDYGLVECQ---ALILAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASG 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 160 VHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGV 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 220 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLA 279

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 280 ITQ-----SVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V +ED + +  
Sbjct: 335 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTREDERMLFD 394

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     ++ L  +++ L
Sbjct: 395 IQKFYNVVIEELPANVADL 413


>gi|119187445|ref|XP_001244329.1| hypothetical protein CIMG_03770 [Coccidioides immitis RS]
 gi|118578050|sp|Q1E0Z3|DBP8_COCIM RecName: Full=ATP-dependent RNA helicase DBP8
          Length = 536

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 26/387 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL+P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F  P+L  
Sbjct: 108 FSSLGLAPWLVGSLSAMAIRRPTAIQRACIPEILKGRDCIGGSRTGSGKTVAFAAPILHR 167

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             +    +     ++L PTRELA Q+ + F+      +L   L+ GG     Q   L   
Sbjct: 168 WSEDPFGIF---AVVLTPTRELALQIFEQFKAISAPQSLKPVLITGGSEMRPQAIALSTR 224

Query: 123 ADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSLVP 175
             V+I TPGR+ DH           +N + ++V+DEADR+L  G    +P ++   S +P
Sbjct: 225 PHVVIATPGRLADHIKTSGQDTIYGLNRVRMVVLDEADRLLASGPGSMLPDVETCLSALP 284

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKR------IEVNTPSSTA--ETIEHCFVATY 225
              +RQTLLF+AT+T E++ +    +  PK        E++T ++T    T++ C++   
Sbjct: 285 PSTSRQTLLFTATVTQEVRALKS--MPRPKDRLPIFVTEISTENNTTIPPTLKQCYL--Q 340

Query: 226 AQYSKKCALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
              + + A L  LL +  ++ K  IIFCN+ K    L   L + G  V ++H  + Q  R
Sbjct: 341 VPMTHREAFLHVLLSTDANSSKPAIIFCNRTKTADLLDRLLRRLGHRVTSLHSLLPQSER 400

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
              L+ F+    +L+VA+D+AARGLDIP VG V NFDVP   ++YIHR+GRT RAGR G+
Sbjct: 401 TSNLARFRASAARLLVATDVAARGLDIPSVGLVVNFDVPRNPDDYIHRVGRTARAGREGE 460

Query: 345 AFTLVAKEDIKHIDAIEKLIEKK-VDW 370
           A TLV + D++ + AIE+ + ++ V W
Sbjct: 461 AITLVGQRDVQLVLAIEERVGRQMVAW 487


>gi|255085454|ref|XP_002505158.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
 gi|226520427|gb|ACO66416.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
          Length = 675

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 206/374 (55%), Gaps = 23/374 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F ++     ++  +   G  +PTPIQI+ +P++L   D+ GIA TG+GK+ +FVLPM+  
Sbjct: 230 FREMKFPKPIIDELTRKGIARPTPIQIQGLPVILSGRDIIGIAFTGSGKSLTFVLPMIMA 289

Query: 61  TILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNY------NLTVALLIGGIP 111
            ++E+ R  +     P  LIL P+RELA Q  +  E +           + + L IGG+ 
Sbjct: 290 AMMEEHRMPLEGGEGPVGLILCPSRELARQTHEVIEGFTVELAKQGMAQMRIMLCIGGVD 349

Query: 112 FEAQNKKLER-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              Q+  +   G  ++  TPGR+ D  ++ ++ ++  + L +DEADRM+D+GF   I++I
Sbjct: 350 SREQSDIVRNAGVHMVTATPGRLKDLLHKKRMNLDICKYLCMDEADRMVDLGFEDDIRDI 409

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM ++++K +E+ L NP  I VN   + A  ++      Y +   
Sbjct: 410 YSFFKSQRQTLLFSATMPEKIRKFAESALVNP--IVVNVGRAGAANLDVIQEVEYVKQEA 467

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K   L + LQ   T    +IFC  K +V ++   L  +G    AIHG   Q  R   +S 
Sbjct: 468 KIVYLLECLQK--TAPPVLIFCENKGDVDDIHEYLLLKGVEAVAIHGGKGQDERDWAISE 525

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK     ++VA+D+A +GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 526 FKAQRKDVLVATDVAGKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRCGKTGIATTFIN 585

Query: 351 KE-------DIKHI 357
           K        D+KH+
Sbjct: 586 KNQSETILLDLKHL 599


>gi|164657394|ref|XP_001729823.1| hypothetical protein MGL_2809 [Malassezia globosa CBS 7966]
 gi|159103717|gb|EDP42609.1| hypothetical protein MGL_2809 [Malassezia globosa CBS 7966]
          Length = 402

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 131/377 (34%), Positives = 213/377 (56%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++GLSP+++  V   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F +    
Sbjct: 30  NFDNMGLSPELLRGVFAYGFERPSAIQARAIVPVIKGHDVIAQAQSGTGKTATFSV---A 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    ++  + L+L PTRELA Q+ +     G   N+     IGG        +L  
Sbjct: 87  ILQRIDPNLKAVQALVLAPTRELAQQIQNVVVALGDYMNIQCHACIGGTNVREDMARLSD 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR+ D  NR     +++++  +DEAD ML  GF   +  +  L+P   Q +
Sbjct: 147 GAQVVVGTPGRVYDMINRRAFRTDHLKMFCLDEADEMLSRGFKDQMYEVFQLLPQDTQVV 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM +++  V++ F+++P RI V     T E I+  ++A   +  K   L    L  
Sbjct: 207 LLSATMPEDVLAVTKKFMRDPVRILVKRDELTLEGIKQFYIAVEKEEWKFETLTD--LYE 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L    F+V A+HG++DQ+ R  I+  F+ G+ ++++ 
Sbjct: 265 TVTITQAVIFCNTRRKVDWLTEQLHAMEFTVSAMHGDMDQQQREVIMREFRSGSSRVLIT 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 325 TDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTHDDVRMMRDIE 384

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +V+ +  +++ L
Sbjct: 385 QFYNTQVEEMPMNVADL 401


>gi|330834640|ref|YP_004409368.1| DEAD/DEAH box helicase domain-containing protein [Metallosphaera
           cuprina Ar-4]
 gi|329566779|gb|AEB94884.1| DEAD/DEAH box helicase domain-containing protein [Metallosphaera
           cuprina Ar-4]
          Length = 348

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 127/363 (34%), Positives = 209/363 (57%), Gaps = 30/363 (8%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           LS ++  A+ +  Y +PT +Q  TIP+++    V   A+TG+GKTAS+++P+L       
Sbjct: 5   LSDQLKRALEEIDYQRPTKVQELTIPVLMSGKSVIVQAKTGSGKTASYLIPVLE------ 58

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
              R   TLIL PTRELA QVA   ++ GK   +++ ++IGG+ +E Q +  E  +D+++
Sbjct: 59  ---REEDTLILTPTRELADQVAYEAKRLGKYKRMSIGVIIGGVGYEKQER--ESNSDIIV 113

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS-----LVPFTRQTLL 182
            TPGRILD + +G L +   ++ V+DE DRMLDMGFI  ++ I S     L  F      
Sbjct: 114 GTPGRILDLWGKGVLDLARFKVAVVDEVDRMLDMGFIEDVRMILSKTDADLFGF------ 167

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  E++K++E F ++   ++V+        IEH F      +++K   + +     
Sbjct: 168 FSATVPSEVKKLAEGFARDASFLKVDEYKPVE--IEHEFYPVRDNWNEKVYNVLK----- 220

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D     I+F N K     L   +  +  +V  +HG++ Q +R + L NF++G   +++++
Sbjct: 221 DAKSKTIVFTNTKSRAEALYDRVSDR-LTVSLLHGDMSQGARRRNLMNFRKGYSDVLIST 279

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARG+D+ DV  V NFD+P   + YIHR+GRTGR GR G+A +   + + + +  I+ 
Sbjct: 280 DLAARGIDVIDVEQVINFDLPRDLDTYIHRVGRTGRLGRTGRAISYYTRREEEMVSRIKN 339

Query: 363 LIE 365
           L++
Sbjct: 340 LLK 342


>gi|156095288|ref|XP_001613679.1| RNA helicase-1 [Plasmodium vivax SaI-1]
 gi|148802553|gb|EDL43952.1| RNA helicase-1, putative [Plasmodium vivax]
          Length = 667

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 130/357 (36%), Positives = 206/357 (57%), Gaps = 17/357 (4%)

Query: 24  PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-----PRTLIL 78
           PT IQ++ +P +L   D+ GIA TG+GKT  FVLP++ I  +G  R  +     P  LI+
Sbjct: 241 PTQIQMQGLPSILLGRDIIGIAFTGSGKTIVFVLPLVMICLEGELRCPIEEGEGPLGLIV 300

Query: 79  EPTRELAAQVADNFEKYGK-----NYNLTVAL-LIGGIPFEAQNKKLERGADVLICTPGR 132
            P+RELA Q  +  + + +      Y L  +L +IGG+    Q +++++G  +++ TPGR
Sbjct: 301 CPSRELATQTHNVIKYFCEFLHQDKYPLLRSLCMIGGVSTFDQGREIQKGMHMVVATPGR 360

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           + D  N+ ++ +     L  DEADR++D+GF   ++N        RQTLLFSATM  ++Q
Sbjct: 361 LNDMLNKKRMTLEQCRYLCFDEADRLIDLGFEEEVRNTLDHFSRQRQTLLFSATMPKKIQ 420

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           + +++ L NP  I +N   + A  ++      Y +   K + L ++LQ   T    +IFC
Sbjct: 421 EFAKSTLVNP--IIINVGRAGAANLDVIQEVEYVKEELKLSYLLEVLQK--TGPPVLIFC 476

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             KK+V ++   L  +G +  AIHGN+ Q  R + ++ F+EG   ++V +D+A++GLD P
Sbjct: 477 ENKKDVDDVHEYLLLKGVNAIAIHGNLGQTERQEAINLFREGKKDILVGTDVASKGLDFP 536

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK--EDIKHIDAIEKLIEKK 367
            + HV N+D+P   ENY+HRIGRTGR G+ G A T + K  E+   +D    LIE K
Sbjct: 537 SIEHVINYDMPKDIENYVHRIGRTGRCGKTGIATTFINKNQEEAILLDLKALLIEAK 593


>gi|160380699|sp|A7EYW0|DBP3_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp3
          Length = 596

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 126/344 (36%), Positives = 192/344 (55%), Gaps = 13/344 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---MLTILEKGRARVRMPRTLI 77
           +  PTPIQ    P +L   DV G+A+TG+GKT +F +P    ++ L K + + + PR ++
Sbjct: 199 FKAPTPIQAAAWPFLLAGRDVIGVAETGSGKTMAFAVPCVRYMSSLPKNQ-KNKGPRAVV 257

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           + PTRELA Q  +   K  K   L    + GG+P + Q + L + AD+++ TPGR+ D  
Sbjct: 258 VSPTRELAMQSYEQIVKLAKASGLECVCVYGGVPKDEQIRAL-KTADIVVATPGRLNDLI 316

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TRQTLLFSATMTDELQKVS 195
           N+G   ++    +V+DEADRMLD GF   I+ I +  P    RQTL+F+AT  + +++++
Sbjct: 317 NQGCADLSKARYVVLDEADRMLDKGFEEEIRKIINTTPSLGKRQTLMFTATWPESVRELA 376

Query: 196 ENFLQNPKRIEV-NTPSSTAETIEHCF--VATYAQYSKKCALLQQLLQSQDTMKNG---I 249
             F+ +P +I + + P+            V       K+  L+Q L Q Q   +     +
Sbjct: 377 STFMTSPVKIAIGDNPTGDLRANSRIVQKVEVVEPRDKEYRLMQLLKQYQSGSQKDDRIL 436

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           +FC  KK    +   + ++GF V  IHG++ Q  R + L  FK G   ++VA+D+AARGL
Sbjct: 437 VFCLYKKEATRVEGFIRQKGFRVAGIHGDLSQEQRTRSLEAFKSGNTPVLVATDVAARGL 496

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           DIP V  V N   P   E+Y+HRIGRTGRAG+ G A TL  + D
Sbjct: 497 DIPAVKLVINCTFPLTVEDYVHRIGRTGRAGKDGLAITLFTEHD 540


>gi|156043047|ref|XP_001588080.1| hypothetical protein SS1G_10526 [Sclerotinia sclerotiorum 1980]
 gi|154694914|gb|EDN94652.1| hypothetical protein SS1G_10526 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 548

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 126/344 (36%), Positives = 192/344 (55%), Gaps = 13/344 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---MLTILEKGRARVRMPRTLI 77
           +  PTPIQ    P +L   DV G+A+TG+GKT +F +P    ++ L K + + + PR ++
Sbjct: 199 FKAPTPIQAAAWPFLLAGRDVIGVAETGSGKTMAFAVPCVRYMSSLPKNQ-KNKGPRAVV 257

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           + PTRELA Q  +   K  K   L    + GG+P + Q + L + AD+++ TPGR+ D  
Sbjct: 258 VSPTRELAMQSYEQIVKLAKASGLECVCVYGGVPKDEQIRAL-KTADIVVATPGRLNDLI 316

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TRQTLLFSATMTDELQKVS 195
           N+G   ++    +V+DEADRMLD GF   I+ I +  P    RQTL+F+AT  + +++++
Sbjct: 317 NQGCADLSKARYVVLDEADRMLDKGFEEEIRKIINTTPSLGKRQTLMFTATWPESVRELA 376

Query: 196 ENFLQNPKRIEV-NTPSSTAETIEHCF--VATYAQYSKKCALLQQLLQSQDTMKNG---I 249
             F+ +P +I + + P+            V       K+  L+Q L Q Q   +     +
Sbjct: 377 STFMTSPVKIAIGDNPTGDLRANSRIVQKVEVVEPRDKEYRLMQLLKQYQSGSQKDDRIL 436

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           +FC  KK    +   + ++GF V  IHG++ Q  R + L  FK G   ++VA+D+AARGL
Sbjct: 437 VFCLYKKEATRVEGFIRQKGFRVAGIHGDLSQEQRTRSLEAFKSGNTPVLVATDVAARGL 496

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           DIP V  V N   P   E+Y+HRIGRTGRAG+ G A TL  + D
Sbjct: 497 DIPAVKLVINCTFPLTVEDYVHRIGRTGRAGKDGLAITLFTEHD 540


>gi|301615062|ref|XP_002936986.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Xenopus
           (Silurana) tropicalis]
          Length = 614

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 134/361 (37%), Positives = 203/361 (56%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 175 FKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 234

Query: 63  -LEKGR----ARVRMPRTLILEPTRELAAQVADNFEKY-----GKNY-NLTVALLIGGIP 111
            LE+ +    A+   P  LI+ P+RELA Q     E Y       N+ +L  AL IGG+ 
Sbjct: 235 CLEQEKRLPFAKREGPYGLIICPSRELARQTHSIIEYYCHLLQEDNFPHLRTALCIGGMS 294

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +++G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 295 VKEQMETIKQGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEEDIRTIF 354

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  I +N   + A +++   V    +Y K+
Sbjct: 355 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--ITINVGRAGAASLD---VIQEVEYVKE 409

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 410 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 469

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+E    ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 470 FREEKKDVLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 529

Query: 351 K 351
           K
Sbjct: 530 K 530


>gi|162605920|ref|XP_001713475.1| eukaryotic initiation factor 4a [Guillardia theta]
 gi|6690142|gb|AAF24007.1|AF083031_4 eukaryotic initiation factor 4a [Guillardia theta]
          Length = 385

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 120/376 (31%), Positives = 206/376 (54%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L  +++  +   G+ +P+ IQ + I  ++ + DV   +Q+GTGKTA+FV+  L  
Sbjct: 14  FEEMELKRELLKGIYGYGFERPSFIQQRGILPIINKEDVVAQSQSGTGKTATFVIGTLQN 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +++    L+L PTRELA QV   F+  G    +   LL GG   +  NK+  + 
Sbjct: 74  LSNIENKIK---NLVLVPTRELATQVEQVFKSIGFFMKIKTQLLTGGDRIQITNKEQYKK 130

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++I TPG++LD  ++    + N+E LV+DEAD M   GF   +  I   +P   +  L
Sbjct: 131 PQIVIGTPGKVLDSLSKKTYYIENLEYLVVDEADEMFSRGFKIQVLKIIKYLPLEAKIAL 190

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E  ++ E F+ NP +I V     T E I+  ++A   +  K  ++++  + S+
Sbjct: 191 FSATMPIETLEIVELFMTNPVKILVKKDELTLEGIKQFYIAIEKEEWKLDSVIE--IYSK 248

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   II+ N ++    L + ++K GF V  +HG + Q  R  ++ +F+ G  ++++++
Sbjct: 249 IKITQSIIYVNTRRKTEWLANIMKKYGFDVGYLHGEMLQIDRSSVMKDFRSGLFRILIST 308

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL +RG+DI  V  V N+D+P   E YIHRIGR+GR GR G A   +++ D+  + +IE 
Sbjct: 309 DLVSRGIDIQQVCLVINYDLPKLKEVYIHRIGRSGRFGRKGVAINFLSRSDVSILRSIEG 368

Query: 363 LIEKKVDWLNGDLSSL 378
                ++ +  D+S  
Sbjct: 369 YYNTNIEEMPNDISEF 384


>gi|24372719|ref|NP_716761.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24346781|gb|AAN54206.1|AE015557_12 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 447

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 147/432 (34%), Positives = 225/432 (52%), Gaps = 20/432 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+LGL+  +  A L      PT +Q   IP +L   D+  ++QTG+GKT +F LP+L
Sbjct: 17  LTFAELGLNAALRKA-LPTRLKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLL 75

Query: 61  TILEKGRA--------RVRMPRTLILEPTRELAAQVADNFEKYGKNYN----LTVALLIG 108
            IL +  A            P  L+L PTRELA QV++         +    L + LL G
Sbjct: 76  QILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCG 135

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G+  E Q   L     +++ TPGR+LD   +  + ++ I+ LV+DEADR+L+MGF P +Q
Sbjct: 136 GVALEQQLADLSAKPQLVVATPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQ 195

Query: 169 NITSLVPFTRQTLLFSATMTDELQKVSENFLQN-PKRIEVNTPSSTAETIEHCFVATYAQ 227
            + +++P  +QTLLFSAT+ + L  ++   L N P ++E +T ++    IE        +
Sbjct: 196 KLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQLYLVN-K 254

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
            SK  AL+  L Q Q      ++F + + +   +   L K G +  A+HG  DQ  R + 
Sbjct: 255 GSKAQALIALLKQYQ--WPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQT 312

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L++FK   IQ++VA+DL ARG+ +  +  V N D+P  A  Y+HRIGRT RAG  G A +
Sbjct: 313 LADFKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAIS 372

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLN-GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
           LV   ++ ++ AI  L  + +  +   D    + P EKI     N      P   K    
Sbjct: 373 LVCHGEMPNLTAIRNLTARALPLVFLADFPVTDKPSEKIIDGAENKVIPKRPPRDKQA-- 430

Query: 407 DRRKKNYSSQKS 418
           +RR  N  S K+
Sbjct: 431 NRRSINKHSVKA 442


>gi|256083176|ref|XP_002577825.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238663158|emb|CAZ34063.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 590

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 148/421 (35%), Positives = 221/421 (52%), Gaps = 45/421 (10%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +G+  ++  A  +  + +PT IQ+ +IP  L+  ++  +A+TG+GKT ++ LP   I++K
Sbjct: 35  MGIGDELQKACHNLQWKEPTAIQVLSIPPALEGRNLVALAETGSGKTGAYALP---IIQK 91

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA-D 124
                     LIL PTRELAAQV   F   GK   L+ ALL+GG+P   Q+  ++     
Sbjct: 92  LLRDAHPFFALILVPTRELAAQVQTQFHALGKTIGLSTALLVGGVPITQQSDLMKVSPPH 151

Query: 125 VLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           V+I TPGR +DH  + K    L  +N+ ILVIDEADRML + F   I+ I  +VP  RQT
Sbjct: 152 VVIATPGRFVDHLKKTKGFDELKFSNLRILVIDEADRMLGVDFESVIEKILCIVPAQRQT 211

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET--------IEHCFVATYAQYSKKC 232
            LFSATMTD++ K+    + +P R+        + T        +  C + +Y  Y  + 
Sbjct: 212 FLFSATMTDKVGKLQRASILDPVRVSTRKSKFQSLTNLRQYVHLVPQCEIDSYLVYFLRV 271

Query: 233 ALLQQL---------LQSQDT----------MKNGIIFCNQKKNVVNLCHSLEKQGFS-- 271
           AL  ++         LQS  T          M   +I   + +   N  + L +Q     
Sbjct: 272 ALCPEIQVPGLDLIKLQSTSTENLDCANQSFMSTSVIVFTRTRVASNRLNLLLRQFLRQP 331

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
           V A++G++ Q  R+  L  FK     ++VA+D+A+RGLDIP VG V N+DVP  A+ Y+H
Sbjct: 332 VIALNGDMPQAQRLGALHKFKRTQGAVLVATDVASRGLDIPQVGLVVNYDVPLDAKTYMH 391

Query: 332 RIGRTGRAGRHGKAFTLVA--------KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
           R+GRT RAGR G A TL+         KE   H+ +   L  +++  L    SS++  LE
Sbjct: 392 RVGRTARAGRLGCALTLLTQYSVTFFLKEIESHLISAGGLGHERIPALVEPNSSVDKQLE 451

Query: 384 K 384
           K
Sbjct: 452 K 452


>gi|329948141|ref|ZP_08295013.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328522874|gb|EGF49979.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 525

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 124/355 (34%), Positives = 192/355 (54%), Gaps = 6/355 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+   +   +   G+  P PIQ  T+P  L   DV G  +TG+GKT +F LP++  
Sbjct: 35  FASLGVDSDLAADLDSRGFTAPFPIQAATLPDTLAGRDVLGRGRTGSGKTLAFSLPLVQR 94

Query: 63  L-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L ++ +AR   P  L+L PTRELA Q+A+  E   +  ++ V  + GG+  + Q K L+ 
Sbjct: 95  LAQQDKARPGHPIGLVLAPTRELALQIAEVIEPLARVVDMDVTTIFGGVSAKPQEKALKA 154

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++  PGR+LD   +G + ++ +EI V+DEAD M D+GF+P ++ I    P   Q +
Sbjct: 155 GVDVVVACPGRLLDLMGQGLVSLDEVEITVLDEADHMADLGFLPNVRRILRATPQRGQRM 214

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ + +  +   FL  P +  V+  +S  + + H  V   A  + K  ++++L   
Sbjct: 215 LFSATLDNGVDALVAEFLHKPLQHSVDPLTSPVDAMTH-RVWMVADKTAKDGVVRRLASG 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      I+F   K     L   L + G     + GN+ Q +R + +  F  G + +MVA
Sbjct: 274 EGQR---ILFTRTKHLARRLARKLVQAGIPAVELQGNMSQNARERAMKAFSTGQVHVMVA 330

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +D+AARG+D+  V  V + D P   + Y+HR GRT RAG  G   TLV  E  KH
Sbjct: 331 TDIAARGIDVSGVELVVHVDPPAEHKAYLHRSGRTARAGAAGSVITLVLPEQ-KH 384


>gi|257068436|ref|YP_003154691.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
 gi|256559254|gb|ACU85101.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
          Length = 507

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 126/407 (30%), Positives = 206/407 (50%), Gaps = 5/407 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L  +V+  +   G  +   IQ   +P  L   DV   A+TG+GKT +F L M + 
Sbjct: 15  FEDMALPDEVLGVLAGQGLERAFEIQSAILPDALSGRDVLARAETGSGKTLAFTLAMTSR 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               +   R P  ++L PTRELA QV D    + +    +  L+ GG+  E Q   + RG
Sbjct: 75  FRGRKVHRRRPLGVVLVPTRELAVQVVDTIHPFARAVGTSAQLVAGGMNIEKQADAVARG 134

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++D   RG L ++ +E  VIDEAD M D+GF+P +++I + +P   Q +L
Sbjct: 135 VGIVVATPGRLIDLAERGALQLDLVESTVIDEADHMADLGFLPDVRDILAAIPMGTQKML 194

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +++++ ++FL +P   E    ++   T++H  +A  A  +K+    Q   ++ 
Sbjct: 195 FSATLDGQVEQIVDSFLVDPVSHETTPVTAAVATMDHHVLA-VAPAAKREVTAQLAARAG 253

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+    +F   +     +   L + G    A+HGN  Q  R  +L+ F++G   ++VA+
Sbjct: 254 RTL----MFTRTQLGAERVAQELVEVGVGAAALHGNKQQGLRTNVLAGFRQGAFPVLVAT 309

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGL I D+  V + D  +  + Y+HR GRT RAG  G   TL     +     I  
Sbjct: 310 DVAARGLHIDDITMVVHVDPSDAVKEYVHRSGRTARAGAAGSVVTLALPHQLSATRRILA 369

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             E + DW+    S+ +P L  +       A   +P   K  G  R+
Sbjct: 370 GAEVEPDWVEDVSSAEHPALAALGGRTPAGAPIEDPASVKYKGAPRK 416


>gi|293335017|ref|NP_001168055.1| hypothetical protein LOC100381785 [Zea mays]
 gi|223945729|gb|ACN26948.1| unknown [Zea mays]
          Length = 388

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 118/284 (41%), Positives = 168/284 (59%), Gaps = 9/284 (3%)

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
           R   P  LIL PTREL+ Q+ +   K+     + V +  GG P   Q ++LERG D+L+ 
Sbjct: 4   RTAYPSALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPITQQLRELERGVDILVA 63

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL----VPFTRQTLLFS 184
           TPGR++D   R ++ + +I  L +DEADRMLDMGF P ++ I       +P  RQT+LFS
Sbjct: 64  TPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQMDMPLPGARQTMLFS 123

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ-D 243
           AT   E+QK++ +FL N   + V    S+ + I       + Q + K + L  LL +Q D
Sbjct: 124 ATFPKEIQKMASDFLDNYIFLAVGRVGSSTDLIAQR--VEFVQEADKRSHLMDLLHAQRD 181

Query: 244 TMKNGI--IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           T K  +  +F   K+   +L   L   GF   +IHG+ +Q+ R   L +FK G   ++VA
Sbjct: 182 TGKQTLTLVFVETKRGADSLESWLCMNGFPATSIHGDRNQQEREYALRSFKSGQTPILVA 241

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           +D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G A
Sbjct: 242 TDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLA 285


>gi|67469545|ref|XP_650751.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56467402|gb|EAL45363.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 585

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 123/364 (33%), Positives = 198/364 (54%), Gaps = 31/364 (8%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK-----GRARVRMPRT 75
           Y  PTPIQ  +IP+ L+  D+  +A+TGTGKT ++++P++  + K            P  
Sbjct: 196 YENPTPIQCASIPIALKMRDLIALAETGTGKTFAYLIPLIQFVLKLPKLTEETSASGPYA 255

Query: 76  LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           L+L PTRELA Q+     K    + L V   IGG P + Q ++L  GA++++  PGR+ D
Sbjct: 256 LVLAPTRELALQIQKETLKLATPFGLRVCCCIGGEPMQPQIEELSNGAEIVVAAPGRLKD 315

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGF---IPYI------------QNITSLV------ 174
             N+  L++     +V+DEAD+M+D+G    + YI            + I S+       
Sbjct: 316 LLNQSYLVLGQCYFVVLDEADKMIDLGLDVQVRYIFSELPSVKDGSTEEIISMEKENASG 375

Query: 175 -PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
            P TR TL++SATM   L+K++  +L+ P  I +    + AE ++   +  + + + K  
Sbjct: 376 NPSTRTTLMYSATMPSTLEKITNEYLRRPITISIGKTGNVAENVKQNIL--WVEDNMKKR 433

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L Q+++S  +    I+F NQ+K V  +C  LEK+  +   IHG   Q  R   L  FK 
Sbjct: 434 KLIQVIKS--SSPPTIVFVNQQKTVEEICLLLEKEKINCIGIHGGKRQIERTDALDGFKR 491

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
               +MVA+++ +RG+DI  V +V N+++P + E Y HR+GRTGRAG+ G A T + + D
Sbjct: 492 KKYSVMVATNILSRGIDIESVANVINYEMPQKIEEYTHRVGRTGRAGKGGNAITFINEND 551

Query: 354 IKHI 357
            K +
Sbjct: 552 GKEV 555


>gi|212542881|ref|XP_002151595.1| DEAD/DEAH box RNA helicase [Penicillium marneffei ATCC 18224]
 gi|210066502|gb|EEA20595.1| DEAD/DEAH box RNA helicase [Penicillium marneffei ATCC 18224]
          Length = 1207

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 129/375 (34%), Positives = 208/375 (55%), Gaps = 10/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + ++  GL  + +  +   GY  PT IQ + +P ++   DV G+A+TG+GKT SF+LPM 
Sbjct: 575 LKWSQCGLGVQTLDVISKLGYEHPTSIQSQALPAIMSGRDVIGVAKTGSGKTVSFLLPMF 634

Query: 61  TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             ++  R    M  P +LI+ PTRELA Q+  + + + K  NL      GG P + Q  +
Sbjct: 635 RHIKDQRPLENMEGPISLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAE 694

Query: 119 LERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I + + 
Sbjct: 695 LKRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMTNIR 754

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +QT+LFSAT    ++ ++   L  P  I V   S  A  I    V    + +K   LL
Sbjct: 755 PNKQTVLFSATFPRNMEALARKTLIKPVEIIVGGRSVVAPEITQ-IVEVRNENTKFLRLL 813

Query: 236 QQLLQSQDTMKN----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
           + L        N     +IF ++++   +L   L ++G+   +IHG  DQ  R   + +F
Sbjct: 814 ELLGNLYSDEANEDARTLIFVDRQEAADSLLRELMRKGYPCMSIHGGKDQIDRDSTIEDF 873

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + +
Sbjct: 874 KAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTE 933

Query: 352 EDIKHIDAIEKLIEK 366
           +  ++   I K +++
Sbjct: 934 DQERYSVDIAKALKQ 948


>gi|129277522|ref|NP_001076071.1| probable ATP-dependent RNA helicase DDX41 [Bos taurus]
 gi|126717403|gb|AAI33466.1| DDX41 protein [Bos taurus]
 gi|296485512|gb|DAA27627.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Bos taurus]
          Length = 622

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 197/361 (54%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 183 FKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 242

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 243 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMS 302

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 303 VKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 362

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + +N   + A +++   V    +Y K+
Sbjct: 363 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKE 417

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 K 351
           K
Sbjct: 538 K 538


>gi|109098826|ref|XP_001111246.1| PREDICTED: ATP-dependent RNA helicase DDX54 isoform 2 [Macaca
           mulatta]
          Length = 883

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 131/359 (36%), Positives = 196/359 (54%), Gaps = 10/359 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 98  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 158 LKTHSAQT-GARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I + +P   QT+L
Sbjct: 217 PDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVL 276

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS- 241
           FSAT+   L + +   L  P  I ++  +   E ++  F     +   K A+L  LL++ 
Sbjct: 277 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFF--LVREDTKAAVLLHLLRNV 334

Query: 242 ---QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              QD     ++F   K +   L   L  Q  S   I+  +D  +R   L+ F  G    
Sbjct: 335 VRPQDQT---VVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSA 391

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ +DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LV  ++I ++
Sbjct: 392 LIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVVPDEIPYL 450


>gi|223999867|ref|XP_002289606.1| U5 small nuclear ribonucleoprotein, RNA helicase [Thalassiosira
           pseudonana CCMP1335]
 gi|220974814|gb|EED93143.1| U5 small nuclear ribonucleoprotein, RNA helicase [Thalassiosira
           pseudonana CCMP1335]
          Length = 501

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 133/388 (34%), Positives = 206/388 (53%), Gaps = 49/388 (12%)

Query: 8   LSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML------ 60
           + PK++ A+ +   Y KP+PIQ + IP+ +QR D+ GIA+TG+GKTA+F +P+       
Sbjct: 93  IHPKLLDAIENTLKYTKPSPIQRQAIPIGMQRRDLIGIAETGSGKTAAFGIPLCHHILSF 152

Query: 61  ------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL-LIGGIPFE 113
                 T+ E+G      P  L++ PTRELA Q+     K   +    V+L ++GG    
Sbjct: 153 PQSILDTVAEEG------PLALVMAPTRELALQIDIEIRKLLSSQQNVVSLAVVGGQSIT 206

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q  KL  G  V++ TPGRI D      L++N    +V+DEADRM+D+GF P I+ I   
Sbjct: 207 EQATKLRNGVHVVVGTPGRINDCVEMAYLVLNQCSYIVLDEADRMIDLGFAPQIEQILDA 266

Query: 174 ---------------------------VPFTRQTLLFSATMTDELQKVSENFLQNPKRIE 206
                                      VP  R T +FSATM  E++++++ +L++P  ++
Sbjct: 267 MGGKLKSENETEAYEQERKDLEILGKAVPSHRLTAMFSATMPSEVERIAKRYLRHPVIVQ 326

Query: 207 VNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLE 266
           +    S         V   +   +K + L+ +L+   + +  I+F N+KK+   +   +E
Sbjct: 327 IGDQDSGKNARITQRVLYLSSSKQKESTLRDILRRSRSDEKIIVFVNEKKHADGVGRMVE 386

Query: 267 KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
             G     +HG   Q  R + L  F+ G + ++VA+D+A RGLDIPDV  V NFD+P R+
Sbjct: 387 NAGRRCVVLHGGKTQEQREENLGLFRRGGV-VLVATDVAGRGLDIPDVHQVINFDLPTRS 445

Query: 327 -ENYIHRIGRTGRAGRHGKAFTLVAKED 353
            +NY HRIGRTGRAG+ G A + +  ED
Sbjct: 446 IDNYCHRIGRTGRAGKEGLATSFITDED 473


>gi|154344931|ref|XP_001568407.1| ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134065744|emb|CAM43518.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 860

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 129/360 (35%), Positives = 197/360 (54%), Gaps = 27/360 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFADL + P +   +   GY KPTP+Q   IP+ L   D+   AQTG+GKTA+F++P++ 
Sbjct: 406 DFADLLVEPALAANIERCGYKKPTPVQRYGIPVALAGSDLMACAQTGSGKTAAFLIPVVQ 465

Query: 62  IL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +        R R   P  L+L PTRELA Q+ D   K   N ++   ++ GG  +    
Sbjct: 466 YMLVHGVSPARQRKSYPIALVLAPTRELAVQIFDEVRKLTFNTDIFYDVVYGGTRYP--- 522

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--- 173
           ++ E+  D+L+  PGR+ D FN   L  + I+ L++DEADRML+MGF   I+ + +    
Sbjct: 523 QRFEQ--DILVACPGRLRDMFNEEYLSFSAIKFLILDEADRMLEMGFEEQIEELVASRYT 580

Query: 174 -VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEV-----NTPSSTAETIEHCFVATY 225
            +P    RQT +FSAT    +  +++ +L+    +       +T  +  +TIEH      
Sbjct: 581 DMPTVDDRQTFMFSATFPQRILNLAKRYLRRKYYLLTVGRVGSTTKNITQTIEHV----- 635

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
              ++K   L Q++   +     +IF   KK   ++   L ++G S   IHG+  Q+ R 
Sbjct: 636 -PDNEKMDRLLQIIYGHEMSDMVLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDRE 694

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L +FK+    ++VA+D+A+RGLDIPDV HV  FD+P   ++Y HRIGRTGRAG  G A
Sbjct: 695 AALEDFKQKVTPILVATDVASRGLDIPDVAHVVQFDLPQEMDDYTHRIGRTGRAGNKGIA 754


>gi|91199667|emb|CAI78022.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens ATCC
           23877]
 gi|96771714|emb|CAI78296.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens ATCC
           23877]
 gi|117164259|emb|CAJ87801.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens ATCC
           23877]
 gi|126347371|emb|CAJ89079.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens ATCC
           23877]
          Length = 499

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 121/347 (34%), Positives = 186/347 (53%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +  +++ A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 71  FADLDMPRELLAALGSQGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 130

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             K RA  R P  L+L PTRELA QV D    Y ++  L +A ++GG+P   Q   L  G
Sbjct: 131 TAKRRAEARQPLGLVLVPTRELAQQVTDALTPYARSVKLRLATVVGGMPIGRQASALRGG 190

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A++++ TPGR+ D   RG   ++ + + V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 191 AEIVVATPGRLKDLITRGDCRLDQVAVTVLDEADQMADMGFMPQVTALLDQVRPEGQRML 250

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  +    T+EH  +  +   + K A   ++    
Sbjct: 251 FSATLDRNVDLLVRRYLSDPVVHSVDPSAGAVTTMEHHVL--HVHGADKHAATTEIAARD 308

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   ++F + K  V  L   L   G    A+HG   Q  R + L+ FK+G + ++VA+
Sbjct: 309 GRV---LMFLDTKHAVDRLTEHLLNSGVRAAALHGGKSQPQRTRTLTQFKDGHVSVLVAT 365

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARG+ +  +  V N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 366 NVAARGIHVDSLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLV 412


>gi|25028142|ref|NP_738196.1| putative ATP-dependent RNA helicase [Corynebacterium efficiens
           YS-314]
 gi|259507199|ref|ZP_05750099.1| ATP-dependent RNA helicase [Corynebacterium efficiens YS-314]
 gi|23493426|dbj|BAC18396.1| putative ATP-dependent RNA helicase [Corynebacterium efficiens
           YS-314]
 gi|259165214|gb|EEW49768.1| ATP-dependent RNA helicase [Corynebacterium efficiens YS-314]
          Length = 460

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 128/356 (35%), Positives = 187/356 (52%), Gaps = 5/356 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L   +V  +   G     PIQ   IP  L   DV G   TG+GKT +F LPML  
Sbjct: 4   FSELNLPDPIVKELRKEGITDAFPIQAAAIPDALAGLDVLGRGPTGSGKTFTFGLPMLAR 63

Query: 63  LE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   G +R   PR LIL PTRELAAQV +  E       L    ++GG+        L  
Sbjct: 64  LAASGASRPGQPRGLILVPTRELAAQVRERLEGPAAAMGLRTLEVVGGVNINRNITALAS 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DVL+ TPGR  D  N+ KL +  +EI  +DEAD M DMGF+P ++ +  L P   Q L
Sbjct: 124 PVDVLVATPGRAQDLVNQKKLSLAQVEITALDEADHMADMGFLPQVRRLMDLTPAKGQRL 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ K+ + ++ NP        ++   T+ H  +    + S+  AL+ + + +
Sbjct: 184 LFSATLDGDVTKLVDRYMHNPVTHSTAPVAAAVNTMTHYRLLVGGRDSR--ALVVERIAA 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++     I+F   K  V      L + G +   IHG+  Q +R   L+ F +G+I ++VA
Sbjct: 242 REGKT--IMFMRTKHGVDRQVKKLRRVGINAVGIHGDKGQNTRTNALAGFTDGSIPVLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +D+AARG+D+ D+  V + D P   + Y+HR GRT RAG  G   TLV  E +K +
Sbjct: 300 TDIAARGIDVDDISLVVHVDPPAEHKAYLHRAGRTARAGTTGTVVTLVMDEQVKEV 355


>gi|332186811|ref|ZP_08388553.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
 gi|332013144|gb|EGI55207.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
          Length = 580

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 137/389 (35%), Positives = 208/389 (53%), Gaps = 16/389 (4%)

Query: 1   MDFADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M F+ L   P V+ A L A GY  PTP+Q   I    Q  D+   AQTG+GKT +F L M
Sbjct: 1   MPFSAL---PPVLSAALSARGYAAPTPVQAAVIEDDAQGRDLIVSAQTGSGKTVAFGLAM 57

Query: 60  LTILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + L +G   +     P  L++ PTRELA QV+   E         +A  +GG+    + 
Sbjct: 58  ASELLQGADHLPPAGAPMALVIAPTRELALQVSRELEWLYAGARARIATCVGGMDASRER 117

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  GA +++ TPGR+ DH  RG L +++++ +V+DEAD MLDMGF   ++ I    P 
Sbjct: 118 RALNHGAHIVVGTPGRLRDHLERGALDLSSLKFVVLDEADEMLDMGFREDLEQILDATPT 177

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R+TLLFSATM   + ++++ +  N KRIE  +       I +  V T A    + A++ 
Sbjct: 178 ERRTLLFSATMPRPIVQLAKRYQTNAKRIETISEDKGHADIAYQVV-TVAPADIEAAVV- 235

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL+  +  +  I+FC  + NV +L  SL ++GFS  A+ G   Q  R   L   ++G  
Sbjct: 236 NLLRLHEA-EVAILFCATRDNVRHLHASLVERGFSAVALSGEHSQNERNHALQALRDGRA 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++ VA+D+AARG+D+P +  V + ++P  AE   HR GRTGRAGR G A  +V     + 
Sbjct: 295 RVCVATDVAARGIDLPGLTLVIHVEIPRDAEALQHRSGRTGRAGRKGTAILIVPYPRRRR 354

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
           ++ + +      +W         P LE+I
Sbjct: 355 VEGMLRGARIDAEWRRA------PTLEEI 377


>gi|189237234|ref|XP_970515.2| PREDICTED: similar to eukaryotic initiation factor 4A [Tribolium
            castaneum]
          Length = 1983

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 215/379 (56%), Gaps = 9/379 (2%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +F D+ L  +++  +   G+ KP+ IQ + I   ++ HDV   AQ+GTGKTA+F +   +
Sbjct: 1611 NFDDMNLKEELLRGIYAYGFEKPSAIQQRAIIPCVKGHDVIAQAQSGTGKTATFSI---S 1667

Query: 62   ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            IL++    +R  + LIL PTRELA Q+       G   +      IGG       +KLE 
Sbjct: 1668 ILQQIDTSLRECQALILAPTRELAQQIQKVVIALGDFMSAQCHACIGGTNVREDMRKLET 1727

Query: 122  GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            G  V++ TPGR+ D  NR  L  N I++ V+DEAD ML  GF   I ++  ++    Q +
Sbjct: 1728 GVHVVVGTPGRVYDMINRRSLRANFIKMFVLDEADEMLSRGFKDQIHDVFRMLNSDVQVI 1787

Query: 182  LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            L SATM  ++  V+++F++NP RI V     T E I+  FV    +  K    L+ L   
Sbjct: 1788 LLSATMPADVLDVTKSFMRNPVRILVKKEELTLEGIKQFFVYVEREDWK----LETLCDL 1843

Query: 242  QDTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             DT+     +IFCN ++ V  L  ++ K+ F+V A+HG+++QR R  I+  F+ G+ +++
Sbjct: 1844 YDTLSITQAVIFCNTRRKVDWLTENMHKRDFTVSAMHGDMEQRERDVIMRQFRTGSSRVL 1903

Query: 300  VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            + +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V +ED + +  
Sbjct: 1904 ITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTEEDKRTLKD 1963

Query: 360  IEKLIEKKVDWLNGDLSSL 378
            IE+    K+D +  +++ L
Sbjct: 1964 IEQFYNTKIDEMPMNVADL 1982


>gi|148700137|gb|EDL32084.1| mCG141508, isoform CRA_c [Mus musculus]
          Length = 689

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 130/355 (36%), Positives = 203/355 (57%), Gaps = 21/355 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ+KT   V +  D+   A+TGTGKT SF +P++  
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195

Query: 63  LEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ +  +   R P+ L+L PTRELA QVA +F+   +   L+VA   GG  +++Q  ++
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINQI 253

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   G+L ++ +  +V+DE D+MLD+GF   +++I      T  
Sbjct: 254 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 313

Query: 179 ----QTLLFSATMTDELQKVSENFLQNPKRIEV-----NTPSSTAETIEHCFVATYAQYS 229
               QTLLFSAT    + KV++ ++++  R E            A T+EH  +A    +S
Sbjct: 314 EDNPQTLLFSATCPQWVYKVAKKYMKS--RYEQVDLVGKMTQKAATTVEH--LAIQCHWS 369

Query: 230 KKCALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           ++ A++  +LQ    +    IIFC  KKNV  +  +   +  + C +HG+I Q  R   L
Sbjct: 370 QRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITL 428

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
             F+EG+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 429 KGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 483


>gi|68464953|ref|XP_723554.1| hypothetical protein CaO19.4870 [Candida albicans SC5314]
 gi|74656726|sp|Q5APT8|DBP3_CANAL RecName: Full=ATP-dependent RNA helicase DBP3
 gi|46445590|gb|EAL04858.1| hypothetical protein CaO19.4870 [Candida albicans SC5314]
          Length = 564

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 133/344 (38%), Positives = 201/344 (58%), Gaps = 12/344 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTLILE 79
           + KPTPIQ  + P +L   DV G+A+TG+GKT +F +P +  I+  G  +      L + 
Sbjct: 173 FDKPTPIQSVSWPFLLSGKDVIGVAETGSGKTFAFGVPAINNIITTGNTKTL--SVLCIS 230

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA Q+ DN  +   +  +    + GG+  + Q +K+ + A+V++ TPGR++D  N 
Sbjct: 231 PTRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKI-KTANVVVATPGRLVDLIND 289

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQTLLFSATMTDELQKVSENF 198
           G + +  +  LV+DEADRML+ GF   I+ I S    + RQTL+F+AT   E+++++ NF
Sbjct: 290 GAINLGKVNYLVLDEADRMLEKGFEEDIKTIISNTSNSERQTLMFTATWPKEVRELANNF 349

Query: 199 LQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQL--LQSQDTMKNGI-IFCN 253
           + +P ++ V      S  + I    V    ++ K+  L+Q L    + ++  N I IF  
Sbjct: 350 MNSPVKVTVGDRDELSANKRITQV-VEVINKFDKEKKLIQLLRKYNANESSDNKILIFAL 408

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            KK    + + L++  FSV AIHG++ Q+ R   LS FK G   L++A+D+AARGLDIP+
Sbjct: 409 YKKEASRIENFLKRNRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPN 468

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           V  V N   P   E+Y+HRIGRTGRAG  G A TL   ED KH+
Sbjct: 469 VKVVINLTFPLTIEDYVHRIGRTGRAGAKGTAHTLFT-EDEKHL 511


>gi|13514831|ref|NP_004389.2| probable ATP-dependent RNA helicase DDX10 [Homo sapiens]
 gi|76803554|sp|Q13206|DDX10_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX10; AltName:
           Full=DEAD box protein 10
 gi|11414894|dbj|BAB18536.1| RNA helicase [Homo sapiens]
 gi|60552874|gb|AAH91521.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Homo sapiens]
 gi|62739421|gb|AAH93654.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Homo sapiens]
 gi|62739423|gb|AAH93656.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Homo sapiens]
 gi|119587526|gb|EAW67122.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10, isoform CRA_a [Homo
           sapiens]
 gi|189054819|dbj|BAG37650.1| unnamed protein product [Homo sapiens]
          Length = 875

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 210/376 (55%), Gaps = 21/376 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P+L  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 63  LEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     R++   T     LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +
Sbjct: 131 L----YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE 186

Query: 118 KLERGADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++    ++L+CTPGR+L H +        ++++LV+DEADR+LDMGF   +  +   +P 
Sbjct: 187 RIN-NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK 245

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCAL 234
            RQTLLFSAT T  ++ ++   L+NP+ + V+  +  ST  T+E  ++    Q  +K ++
Sbjct: 246 KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQ--QKISV 303

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL--EKQGFSVCAIHGNIDQRSRMKILSNFK 292
           L   L+S    K  I+F +  K V  L       + G S+ A+HG   Q  RM++ + F 
Sbjct: 304 LYSFLRSH-LKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFV 362

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                ++ A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   
Sbjct: 363 RKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPS 422

Query: 353 DIKHIDAIEKLIEKKV 368
           +      +++L++KKV
Sbjct: 423 EKA---MVQQLLQKKV 435


>gi|238878589|gb|EEQ42227.1| hypothetical protein CAWG_00429 [Candida albicans WO-1]
          Length = 529

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 133/344 (38%), Positives = 201/344 (58%), Gaps = 12/344 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTLILE 79
           + KPTPIQ  + P +L   DV G+A+TG+GKT +F +P +  I+  G  +      L + 
Sbjct: 138 FDKPTPIQSVSWPFLLSGKDVIGVAETGSGKTFAFGVPAINKIITTGNTKTL--SVLCIS 195

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA Q+ DN  +   +  +    + GG+  + Q +K+ + A+V++ TPGR++D  N 
Sbjct: 196 PTRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKI-KTANVVVATPGRLVDLIND 254

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQTLLFSATMTDELQKVSENF 198
           G + +  +  LV+DEADRML+ GF   I+ I S    + RQTL+F+AT   E+++++ NF
Sbjct: 255 GAINLGKVNYLVLDEADRMLEKGFEEDIKTIISNTSNSERQTLMFTATWPKEVRELANNF 314

Query: 199 LQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQL--LQSQDTMKNGI-IFCN 253
           + +P ++ V      S  + I    V    ++ K+  L+Q L    + ++  N I IF  
Sbjct: 315 MNSPVKVTVGDRDELSANKRITQV-VEVINKFDKEKKLIQLLRKYNANESSDNKILIFAL 373

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            KK    + + L++  FSV AIHG++ Q+ R   LS FK G   L++A+D+AARGLDIP+
Sbjct: 374 YKKEASRIENFLKRNRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPN 433

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           V  V N   P   E+Y+HRIGRTGRAG  G A TL   ED KH+
Sbjct: 434 VKVVINLTFPLTIEDYVHRIGRTGRAGAKGTAHTLFT-EDEKHL 476


>gi|170059153|ref|XP_001865238.1| ATP-dependent RNA helicase abstrakt [Culex quinquefasciatus]
 gi|167878066|gb|EDS41449.1| ATP-dependent RNA helicase abstrakt [Culex quinquefasciatus]
          Length = 619

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 129/360 (35%), Positives = 200/360 (55%), Gaps = 16/360 (4%)

Query: 10  PKVVCAVLDAGYV-KPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
           PK + A L+   + KP+PIQ++ IP VL   D+ GIA TG+GKT  FVLP++    +   
Sbjct: 188 PKSILAGLEKRNIRKPSPIQVQGIPAVLAGRDLIGIAFTGSGKTLVFVLPIVMFSLEQEI 247

Query: 69  RVRM-----PRTLILEPTRELAAQVADNFEKYGKNY------NLTVALLIGGIPFEAQNK 117
           R+       P  LI+ P+RELA Q  D  + Y ++        +  AL IGG+P      
Sbjct: 248 RLPFMAKEGPYGLIICPSRELAKQTFDIVQYYCQHLQQAGMPEIRSALAIGGVPVNEALA 307

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +++G  +++ TPGR++D  ++  + ++    L +DEADRM+DMGF   ++ I S     
Sbjct: 308 VIQQGCHIMVATPGRLMDMLDKKLVKLDVCRYLCMDEADRMIDMGFEEDVRTIFSYFKGQ 367

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM  ++Q  +++ L  P  + +N   + A ++       Y +   K   L  
Sbjct: 368 RQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASMNVTQDVEYVKQEAKVVYLLD 425

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            LQ   T    +IF  +K++V  +   L  +G    AIHG  DQ  R + +  F+     
Sbjct: 426 CLQK--TPPPVLIFAEKKQDVDAIHEYLLMKGVEAVAIHGGKDQEERYRSVEGFRTQEKD 483

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A++GLD PDV HV N+D+P+  ENY+HRIGRTGR+G  G A T + K   +++
Sbjct: 484 VLVATDVASKGLDFPDVQHVINYDMPDDIENYVHRIGRTGRSGSKGLATTFINKATEQYV 543


>gi|169853643|ref|XP_001833501.1| DEAD-box protein abstrakt [Coprinopsis cinerea okayama7#130]
 gi|116505540|gb|EAU88435.1| DEAD-box protein abstrakt [Coprinopsis cinerea okayama7#130]
          Length = 619

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 131/360 (36%), Positives = 195/360 (54%), Gaps = 18/360 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVK-PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F D+ + P  +   L +  +K PTPIQ++ IP      D+ GIA TG+GKT +F +P++ 
Sbjct: 186 FRDMKI-PDPILQYLKSKNIKNPTPIQLQGIPAAFSGRDIIGIAFTGSGKTLAFCMPLIM 244

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKY-------GKNYNLTVALLIGG 109
           +  +  A++       P  +IL P+RELA+Q  +N + +       GK   L   L IGG
Sbjct: 245 LALEEEAKLPFVQGEGPVGIILCPSRELASQTYENIQTWCTSLSQSGKYPQLNCLLCIGG 304

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +    Q++ L +G  +++ TPGR++D   + +   NN + L +DEADRM+D+GF   ++N
Sbjct: 305 VSMSEQSRVLNKGLHIVVATPGRLIDMLEKKRFTFNNCKYLCMDEADRMIDLGFEDDVRN 364

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I S     RQTLLFSATM  ++Q  +   L  P  I VN   + A  ++   V  Y +  
Sbjct: 365 IMSFFKRQRQTLLFSATMPKKIQDFATESLIKP--ILVNVGRAGAANLDVLQVVEYVKQE 422

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            K   L + LQ   T    IIF   K  V ++   L  +G    AIHG+  Q  R   + 
Sbjct: 423 AKMVYLLECLQK--TPPPVIIFSENKNEVDDIQEYLLLKGVEAVAIHGSKTQEERQYAIK 480

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G   +MVAS +A++GLD  D+ HV  F +P   E+Y+H+IGRTGR+G+ G A T V
Sbjct: 481 AFKSGAKDVMVASGVASKGLDFNDIQHVIIFSMPKEIEDYVHQIGRTGRSGKTGIATTFV 540


>gi|6320449|ref|NP_010529.1| Prp28p [Saccharomyces cerevisiae S288c]
 gi|1172596|sp|P23394|PRP28_YEAST RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28;
           AltName: Full=Helicase CA8
 gi|666103|emb|CAA40255.1| pre-mRNA splicing factor RNA helicase PRP28 (helicase CA8)
           [Saccharomyces cerevisiae]
 gi|817829|emb|CAA89729.1| Prp28p [Saccharomyces cerevisiae]
 gi|285811259|tpg|DAA12083.1| TPA: Prp28p [Saccharomyces cerevisiae S288c]
          Length = 588

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 141/402 (35%), Positives = 216/402 (53%), Gaps = 31/402 (7%)

Query: 2   DFADLGLSPKVVCAVL--DAGYVKPTPIQIKTIPLVL---QRHDVCGIAQTGTGKTASFV 56
           ++ +L + P+ +  V+  +  +  PTPIQ  TIP V    Q  D  G+A TG+GKT +FV
Sbjct: 173 NWEELNIIPRDLLRVIIQELRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFV 232

Query: 57  LPMLTILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGK------NYNLTVA 104
           +P+L  + +   R      +  P+ LIL PTREL  Q+    +K  K      NY+  V 
Sbjct: 233 IPILIKMSRSPPRPPSLKIIDGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVI 292

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
            ++GG   E  +  L  G D+L+ TPGR++D      L+M  +E LV+DEAD+M+D+GF 
Sbjct: 293 SIVGGHSLEEISFSLSEGCDILVATPGRLIDSLENHLLVMKQVETLVLDEADKMIDLGFE 352

Query: 165 PYIQNITSLV------PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
             + NI + V         RQTL+F+ATMT  ++K++  ++Q P    +   + +   I+
Sbjct: 353 DQVTNILTKVDINADSAVNRQTLMFTATMTPVIEKIAAGYMQKPVYATIGVETGSEPLIQ 412

Query: 219 HCFVATYAQYSK-KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ-GFSVCAIH 276
              V  YA   + K   L+ ++   D     IIF N K+    L    +K+    V  +H
Sbjct: 413 Q--VVEYADNDEDKFKKLKPIVAKYDPPI--IIFINYKQTADWLAEKFQKETNMKVTILH 468

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G+  Q  R   L  F+   +Q+M+A+++AARGLDIP+V  V NF +  + ++YIHRIGRT
Sbjct: 469 GSKSQEQREHSLQLFRTNKVQIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRT 528

Query: 337 GRAGRHGKAFTLV-AKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
           GRA   G A + V A ED   I  + K + +K D LN ++ S
Sbjct: 529 GRAANEGTAVSFVSAAEDESLIRELYKYV-RKHDPLNSNIFS 569


>gi|42783412|ref|NP_980659.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987]
 gi|42739341|gb|AAS43267.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           ATCC 10987]
          Length = 436

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 215/378 (56%), Gaps = 14/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L  
Sbjct: 6   FTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           +  GR  V++   +I  PTRELA Q+ +   K  K    +  +T   LIGG   +   +K
Sbjct: 66  INPGREEVQL---VITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ- 237
           Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +  ++  K  L+++ 
Sbjct: 183 QMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPS--KHRNKIDLVKRM 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ +  +   ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 241 LLQFKPYL--AVVFTNTKKMADQVADGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGYSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|149726038|ref|XP_001502240.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX41
           (DEAD box protein 41) (DEAD box protein abstrakt
           homolog) [Equus caballus]
          Length = 622

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 197/361 (54%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 183 FKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 242

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 243 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMS 302

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 303 VKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 362

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + +N   + A +++   V    +Y K+
Sbjct: 363 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKE 417

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 K 351
           K
Sbjct: 538 K 538


>gi|114778510|ref|ZP_01453354.1| ATP-dependent RNA helicase [Mariprofundus ferrooxydans PV-1]
 gi|114551235|gb|EAU53794.1| ATP-dependent RNA helicase [Mariprofundus ferrooxydans PV-1]
          Length = 439

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 126/342 (36%), Positives = 198/342 (57%), Gaps = 19/342 (5%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
           F +L L P  +   +DA G+   T +Q   +P+ L   DV G  +TGTGKTA+F++    
Sbjct: 6   FQELNL-PDALQKGIDALGFTSMTDVQQTALPITLAGKDVAGQGRTGTGKTATFLVTAIN 64

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +LT   K   +   PR L++ PTREL  Q+A +  K  +  +L +  + GG+ +E Q K
Sbjct: 65  RLLTSPPKTGRKHNFPRALVIAPTRELVIQIASDAHKLAQFTDLKIHTVYGGVDYEKQLK 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176
             + G D+LI TPGR++D+  +    +   E+LVIDEADRM D+GFI  ++ +   +P  
Sbjct: 125 AFDDGVDILIGTPGRLIDYLKKRAYELKLTEMLVIDEADRMFDLGFINDLRFMMRRLPKF 184

Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTAETIEHCFVATYAQYSKK 231
             RQ+L+FSAT++  + +++   +  P ++       T S   ET+ H  +        K
Sbjct: 185 DERQSLMFSATLSHRVMELAYEHMNQPVKLRAEEGGITASGIVETMYHTAM------DDK 238

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL  LL+ +  ++ G+IF N+K+    L  +L + GFSV  + G++ Q  R++IL +F
Sbjct: 239 LPLLIHLLR-ESNVERGMIFINEKRTGERLARNLARYGFSVGILSGDVRQAKRVRILEDF 297

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
             G +QL+VA+D+A+RGL I  V HVFN+D+P  AENY+HRI
Sbjct: 298 TNGKLQLLVATDVASRGLHIDGVTHVFNYDLPEDAENYVHRI 339


>gi|14042692|dbj|BAB55355.1| unnamed protein product [Homo sapiens]
          Length = 622

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 197/361 (54%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 183 FKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 242

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 243 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMS 302

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 303 VKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 362

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + +N   + A +++   V    +Y K+
Sbjct: 363 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKE 417

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 K 351
           K
Sbjct: 538 K 538


>gi|50290013|ref|XP_447438.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661246|sp|Q6FQQ6|IF4A_CANGA RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|49526748|emb|CAG60375.1| unnamed protein product [Candida glabrata]
          Length = 396

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 132/378 (34%), Positives = 216/378 (57%), Gaps = 8/378 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L+ K++  V   G+ KP+ IQ + I  +++ +DV   AQ+GTGKT +F +  L 
Sbjct: 24  EFDDMNLNEKLLRGVFGYGFNKPSAIQQRAIMPIIEGNDVLAQAQSGTGKTGTFSIAALQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++ P+ L+L PTRELA Q+       G + ++ V   IGG  F    + L R
Sbjct: 84  RIDPA---IKAPQALMLAPTRELALQIQKVVMALGFHMDIKVHACIGGTSFVEDAEGL-R 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            A +++ TPGR+ D+  R K  ++NI++ ++DEAD ML  GF   I  I +++P T Q +
Sbjct: 140 DAQIVVGTPGRVFDNIQRRKFKVDNIKMFILDEADEMLSTGFKEQIYQIFTMLPPTTQVV 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQLLQ 240
           L SATM  ++ +V+  F+QNP RI V     T E I+  +V     Q+   C  L  L  
Sbjct: 200 LLSATMPRDVLEVTAKFMQNPVRILVKKDELTLEGIKQFYVNVEEEQFKYDC--LTDLYD 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S  ++   +IFCN ++ V  L   L    F+V +I+ ++ Q+ R  I+  F+ G+ ++++
Sbjct: 258 SI-SVTQAVIFCNTRRKVEELTQRLTADNFTVSSIYSDLPQQERDTIMKEFRSGSSRILI 316

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   +  ED++ +  +
Sbjct: 317 STDLLARGIDVQQVSLVINYDLPTNKENYIHRIGRGGRFGRKGVAINFIVNEDVQALREL 376

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+    +++ L  D+ +L
Sbjct: 377 EQFYSTQIEELPSDIGTL 394


>gi|291404258|ref|XP_002718495.1| PREDICTED: nucleolar protein GU2 [Oryctolagus cuniculus]
          Length = 735

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 129/353 (36%), Positives = 205/353 (58%), Gaps = 17/353 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + V  +   G     PIQ+KT   + +  D+   A+TGTGKT SF +P++  
Sbjct: 137 FSNFSISEETVKLLKGRGVTYLFPIQVKTFGPIYEGKDLIAQARTGTGKTFSFAIPLIER 196

Query: 63  LEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ +  V   R P+ L+L PTRELA QVA +F+   +   L+VA   GG  +++Q   +
Sbjct: 197 LQRNQETVKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 254

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   G+L ++ +  +V+DE D+MLD+GF   +++I      T  
Sbjct: 255 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 314

Query: 179 ----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
               QTLLFSAT    + KV++ ++++  +++++        A T+EH  +A    +S++
Sbjct: 315 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEH--LAIQCHWSQR 372

Query: 232 CALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A++  +LQ    +    IIFC  KKNV  +  +   +  + C +HG+I Q  R   L  
Sbjct: 373 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKG 431

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           F+EG+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 432 FREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 484


>gi|223590189|sp|A5DLR3|DBP10_PICGU RecName: Full=ATP-dependent RNA helicase DBP10
 gi|190347777|gb|EDK40116.2| hypothetical protein PGUG_04214 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 914

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 132/413 (31%), Positives = 216/413 (52%), Gaps = 49/413 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  GLS  ++  +   G+ +PTPIQ KTIPLV++  DV G+A+TG+GKTA+FVLP++  
Sbjct: 101 FASFGLSKFLLKNIAKKGFKQPTPIQRKTIPLVMESRDVVGMARTGSGKTAAFVLPVVEK 160

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +V + R +IL P+RELA Q     +++ K  +L   +LIGG   E Q   +   
Sbjct: 161 LKSHSPKVGV-RAVILSPSRELALQTFKQVKEFTKGTDLRSIVLIGGDSLEDQFSSMMTN 219

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR L       L +  +E +V DEADR+ +MGF   +  +   +P +RQ+LL
Sbjct: 220 PDILVATPGRFLHLKVEMNLDLKTVEYIVFDEADRLFEMGFAEQLNELLVALPPSRQSLL 279

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
           FSAT+   L   ++  L NP  + ++  +  ++ ++  F  T  +  +   LL  L    
Sbjct: 280 FSATLPRSLVDFAKAGLSNPVLVRLDAETKISDQLQMAFFTT-KRTERDANLLYILSEVI 338

Query: 239 ---LQSQDTMK----------------------------------------NGIIFCNQK 255
              L +QD +K                                        + I+F   K
Sbjct: 339 KMPLATQDQIKKLKELEEGADDDDSDEEKKPKKKKRKLEKPAPANRLPSEHSTIVFVPTK 398

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
            +V  +   L   G  V  I+G +DQ +R + L  F+     ++V +D+AARG+DIP + 
Sbjct: 399 HHVEYVTTLLRDAGHLVSYIYGTLDQHARKQQLYQFRAAYTNILVVTDVAARGIDIPVLA 458

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           +V N+ +P  ++ +IHR+GRT RAG  G A+++V ++++ ++  +E  + KKV
Sbjct: 459 NVVNYTLPGSSKIFIHRVGRTARAGNKGWAYSIVNEKELPYLLDLELFLGKKV 511


>gi|170092587|ref|XP_001877515.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647374|gb|EDR11618.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 397

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 208/368 (56%), Gaps = 5/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L P+++  +   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F    ++
Sbjct: 25  NFDNMDLKPELLRGIYAYGFERPSAIQQRAIVPVVKGHDVIAQAQSGTGKTATF---SIS 81

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    ++  + LIL PTRELA Q+       G   N+     +GG        KL+ 
Sbjct: 82  ILQQLDMSIKGTQALILAPTRELAQQIQKVVIALGDYMNIECHACVGGTNVREDMAKLQE 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L  +NI+I  +DEAD ML  GF   I  +  L+P   Q +
Sbjct: 142 GVQVVVGTPGRVFDMINRRALRTDNIKIFCLDEADEMLSRGFKDQIYEVFQLLPQDTQVV 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V++ F+++P RI V     T E I+  ++A   +  K   L    L  
Sbjct: 202 LLSATMPADVLEVTKKFMRDPVRILVKRDELTLEGIKQFYIAVEKEEWKLDTLCD--LYE 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   +  + F+V A+HG+++Q+ R  ++  F+ G+ ++++ 
Sbjct: 260 TVTITQAVIFCNTRRKVDWLTEKMHSREFTVSAMHGDMEQKQREVLMKEFRSGSSRVLIT 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 320 TDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTTDDVRMLRDIE 379

Query: 362 KLIEKKVD 369
           +    ++D
Sbjct: 380 QFYNTQID 387


>gi|229582467|ref|YP_002840866.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           Y.N.15.51]
 gi|228013183|gb|ACP48944.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           Y.N.15.51]
          Length = 360

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 125/357 (35%), Positives = 204/357 (57%), Gaps = 20/357 (5%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           LS  +  A+ +AGY+KPT +Q   IP ++    V   A+TG+GKTA++V+P+L       
Sbjct: 22  LSEDLRKALNEAGYIKPTRVQEVVIPELMNSKSVIVQAKTGSGKTAAYVIPILE------ 75

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
              R    LIL P+RELA Q+ D  +K GK   + V+L+IGG+ ++ Q     R + +++
Sbjct: 76  ---RNSTALILSPSRELATQILDEIKKLGKYKQIDVSLIIGGMSYDDQ-----RQSKIVV 127

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+LD +++GK+  +  + +++DEADRMLDMGFI  I+ I +     +    FSAT+
Sbjct: 128 GTPGRLLDLWSKGKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCN-AKIAGFFSATI 186

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
            DE+  +++ F ++ + I ++      E ++  FV     ++ K + L + +  +  +  
Sbjct: 187 PDEIMTLAKEFSKDLREIVLD-EYKPVEEVKQKFVKVRNDWNDKVSKLLEEINGEKIL-- 243

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
             +F   +     L + L+ +G +V  + G++ Q  R+K    FK+G   ++VA+DLA+R
Sbjct: 244 --VFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVATDLASR 301

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           G+DI DV  V NFD+P   E YIHR+GRTGR GR G+A T     +   I  I  L+
Sbjct: 302 GIDIIDVNKVINFDIPRDVETYIHRVGRTGRMGRVGQAITFYTFREADMIKRINNLL 358


>gi|87121888|ref|ZP_01077774.1| ATP-dependent RNA helicase [Marinomonas sp. MED121]
 gi|86162917|gb|EAQ64196.1| ATP-dependent RNA helicase [Marinomonas sp. MED121]
          Length = 433

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 116/373 (31%), Positives = 214/373 (57%), Gaps = 4/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L P +  A++  G+ +PT IQ + IP+++   D+   A TGTGKT SF  P +
Sbjct: 1   MSFSELELDPTIEQAIIQLGFKEPTEIQTQGIPVLMDGEDLLASAPTGTGKTLSFCAPAV 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             IL++  A    P+ LIL PTRELA Q+ +  ++   +  +   L++GG P+  Q ++L
Sbjct: 61  QHILDRDEASTNAPKALILAPTRELARQIFNLVKELLIHTRIQPQLIVGGTPYGMQQQQL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+L+ TPGR+ +  ++  L ++++   VIDEADRMLDMGF   I  +   +P  RQ
Sbjct: 121 SEDCDILVATPGRLKELDDKQWLDLSDVSYFVIDEADRMLDMGFADTITALVKELPKERQ 180

Query: 180 TLLFSATMT-DELQKVSEN-FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           T + SAT+  D+L ++++  F Q P+ I++N  + T  +            + K A+++ 
Sbjct: 181 TAMLSATLDGDKLGQLADKIFKQTPEAIQINDSTRTIPSQIKQIAYRVDDDAHKEAIVKH 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ Q+ ++  ++F + + +V    + +         +HG + Q  R + +   ++G +Q
Sbjct: 241 LLK-QEGVQQALLFVSNRDHVDVWVNKIRALHIMCSGLHGVMKQGDRSEHMKQMQKGRLQ 299

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+P++  V N  +P ++++Y+HR GR  R G  G   +L+   D+  +
Sbjct: 300 VLVATDVAARGIDLPEINTVINLRLPQKSDSYVHRAGRASRDGNEGTCISLIDSTDLAMM 359

Query: 358 DAIEKLIEKKVDW 370
           + I++ ++  + +
Sbjct: 360 EKIQRYMQSPIKF 372


>gi|296193469|ref|XP_002744529.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Callithrix
           jacchus]
          Length = 622

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 197/361 (54%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 183 FKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 242

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 243 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMS 302

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 303 VKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 362

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + +N   + A +++   V    +Y K+
Sbjct: 363 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKE 417

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 K 351
           K
Sbjct: 538 K 538


>gi|21071032|ref|NP_057306.2| probable ATP-dependent RNA helicase DDX41 [Homo sapiens]
 gi|55625482|ref|XP_518135.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 isoform 3 [Pan
           troglodytes]
 gi|20532370|sp|Q9UJV9|DDX41_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX41; AltName:
           Full=DEAD box protein 41; AltName: Full=DEAD box protein
           abstrakt homolog
 gi|15930065|gb|AAH15476.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Homo sapiens]
 gi|119605387|gb|EAW84981.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41, isoform CRA_d [Homo
           sapiens]
 gi|189067937|dbj|BAG37875.1| unnamed protein product [Homo sapiens]
 gi|306921323|dbj|BAJ17741.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [synthetic construct]
 gi|325463517|gb|ADZ15529.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [synthetic construct]
          Length = 622

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 197/361 (54%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 183 FKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 242

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 243 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMS 302

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 303 VKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 362

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + +N   + A +++   V    +Y K+
Sbjct: 363 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKE 417

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 K 351
           K
Sbjct: 538 K 538


>gi|301785524|ref|XP_002928176.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like
           [Ailuropoda melanoleuca]
          Length = 622

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 197/361 (54%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 183 FKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 242

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 243 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMS 302

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 303 VKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 362

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + +N   + A +++   V    +Y K+
Sbjct: 363 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKE 417

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 K 351
           K
Sbjct: 538 K 538


>gi|195438679|ref|XP_002067260.1| GK16276 [Drosophila willistoni]
 gi|194163345|gb|EDW78246.1| GK16276 [Drosophila willistoni]
          Length = 950

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 208/378 (55%), Gaps = 15/378 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L P ++  +   G+ KPT IQ +  P+ L   D+ GIAQTG+GKT +++LP + 
Sbjct: 242 NFEEASLPPHIIDEMKRQGFTKPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIV 301

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNK 117
            +  +    R   P  L+L PTRELA Q+      YG      +    + GG     Q +
Sbjct: 302 HIGNQPPILRGEGPVALVLAPTRELAQQIQSVVRDYGHLCQPEIRHTCIFGGSSKVPQAR 361

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LERG +V+I TPGR++D        +     LV+DEADRMLDMGF P I+ I   +   
Sbjct: 362 DLERGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 421

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKC 232
           RQ +++SAT   E+Q ++ +FL +  +I + + + +A     + +E C      Q  +  
Sbjct: 422 RQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEMEKPQ--RMM 479

Query: 233 ALLQQLLQSQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            LL++++ + +   N     IIF   K  V ++   +  +G++  +IHG+  Q  R  +L
Sbjct: 480 RLLKEIVPTTNNAANNLNKIIIFVETKIKVEDILQIIRTEGYTATSIHGDKTQNERDSVL 539

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +F+ G   +++A+D+A+RGLD+ D+ +V N+D PN +ENY+HRIGRTGR  + G A+T 
Sbjct: 540 KDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTF 599

Query: 349 VAKEDIKHIDAIEKLIEK 366
              ++ K    +  ++E+
Sbjct: 600 FTPDNAKQARELISVLEE 617


>gi|85711185|ref|ZP_01042245.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
 gi|85695098|gb|EAQ33036.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
          Length = 404

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 128/371 (34%), Positives = 206/371 (55%), Gaps = 7/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           D+ +L L   ++  +  AG  KP  +Q   +P  +  HD+   + TGTGKT +F+LP+L 
Sbjct: 4   DWQELELDDALISVLKAAGLNKPAKVQQAALPAAMDGHDLLISSPTGTGKTLAFLLPVLQ 63

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++  R +    R LIL PTRELA Q+    E +     L+  ++ GG+ + +Q  +LE
Sbjct: 64  HMMDFPRKQPGAARALILAPTRELAEQIYQQAEMFRALTELSSVVVTGGVNYGSQLSRLE 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D++I TPGR+LD     +  +  +E LVIDEADRMLDMGF   +++I       +  
Sbjct: 124 QSHDIVIATPGRLLDLLEAEQYELEAVEWLVIDEADRMLDMGFKGVVKDIALHARNRQHA 183

Query: 181 LLFSATM-TDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQL 238
           +L SAT+ +D ++  S   L  P+ IEV  P     + IEH ++A    + ++  LL  +
Sbjct: 184 ILCSATIESDGVKAFSHTLLNEPELIEVTPPKRERGKIIEHAYLADTDDHKRQ--LLMAI 241

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+        I+F   ++ V  L   L+ Q   V  + G++    R + +  FK     +
Sbjct: 242 LKQHSG--RSIVFARTRERVQALASFLQSQDVPVMFLRGDLPHAERQQKIIEFKRRDNAV 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RGLDI D+  V N+D+P +A+ Y+HRIGRT RAG+ G A +LV   D   + 
Sbjct: 300 LVATDVASRGLDIDDIKLVINYDLPKQADVYVHRIGRTARAGQKGLAISLVEAHDALLLG 359

Query: 359 AIEKLIEKKVD 369
            IE+ +E ++D
Sbjct: 360 KIERYMEHRLD 370


>gi|190404808|gb|EDV08075.1| pre-mRNA splicing factor ATP-dependent RNA helicase PRP28
           [Saccharomyces cerevisiae RM11-1a]
 gi|207346532|gb|EDZ73004.1| YDR243Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|323338187|gb|EGA79420.1| Prp28p [Saccharomyces cerevisiae Vin13]
          Length = 588

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 141/402 (35%), Positives = 216/402 (53%), Gaps = 31/402 (7%)

Query: 2   DFADLGLSPKVVCAVL--DAGYVKPTPIQIKTIPLVL---QRHDVCGIAQTGTGKTASFV 56
           ++ +L + P+ +  V+  +  +  PTPIQ  TIP V    Q  D  G+A TG+GKT +FV
Sbjct: 173 NWEELNIIPRDLLRVIIQELRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFV 232

Query: 57  LPMLTILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGK------NYNLTVA 104
           +P+L  + +   R      +  P+ LIL PTREL  Q+    +K  K      NY+  V 
Sbjct: 233 IPILIKMSRSPPRPPSLKIIDGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVI 292

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
            ++GG   E  +  L  G D+L+ TPGR++D      L+M  +E LV+DEAD+M+D+GF 
Sbjct: 293 SIVGGHSLEEISFSLSEGCDILVATPGRLIDSLENHLLVMKQVETLVLDEADKMIDLGFE 352

Query: 165 PYIQNITSLV------PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
             + NI + V         RQTL+F+ATMT  ++K++  ++Q P    +   + +   I+
Sbjct: 353 DQVTNILTKVDINADSAVNRQTLMFTATMTPVIEKIAAGYMQKPVYATIGVETGSEPLIQ 412

Query: 219 HCFVATYAQYSK-KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ-GFSVCAIH 276
              V  YA   + K   L+ ++   D     IIF N K+    L    +K+    V  +H
Sbjct: 413 Q--VVEYADNDEDKFKKLKPIVAKYDPPI--IIFINYKQTADWLAEKFQKETNMKVTILH 468

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G+  Q  R   L  F+   +Q+M+A+++AARGLDIP+V  V NF +  + ++YIHRIGRT
Sbjct: 469 GSKSQEQREHSLQLFRTNKVQIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRT 528

Query: 337 GRAGRHGKAFTLV-AKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
           GRA   G A + V A ED   I  + K + +K D LN ++ S
Sbjct: 529 GRAANEGTAVSFVSAAEDESLIRELYKYV-RKHDPLNSNIFS 569


>gi|195565659|ref|XP_002106416.1| GD16140 [Drosophila simulans]
 gi|194203792|gb|EDX17368.1| GD16140 [Drosophila simulans]
          Length = 800

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 125/378 (33%), Positives = 207/378 (54%), Gaps = 14/378 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   V+  +   G+ KPT IQ +  P+ L   D+ GIAQTG+GKT +++LP +
Sbjct: 238 VSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAI 297

Query: 61  TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQN 116
             +      +R   P  L+L PTRELA Q+      YG      +    + GG     Q 
Sbjct: 298 VHIGNQPPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQA 357

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+RG +V+I TPGR++D        +     LV+DEADRMLDMGF P I+ I   +  
Sbjct: 358 RDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 417

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKK 231
            RQ +++SAT   E+Q ++ +FL +  +I + + + +A     + +E C      Q  + 
Sbjct: 418 DRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQ--RL 475

Query: 232 CALLQQLLQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
             LL ++   +++  NG   I+F   K  V ++   +  +G++  +IHG+  Q  R  +L
Sbjct: 476 VCLLNEISPIKNSGSNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVL 535

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +F+ G   +++A+D+A+RGLD+ D+ +V N+D PN +ENY+HRIGRTGR  + G A+T 
Sbjct: 536 KDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTF 595

Query: 349 VAKEDIKHIDAIEKLIEK 366
              ++ K    +  ++E+
Sbjct: 596 FTPDNAKQARELISVLEE 613


>gi|73953218|ref|XP_536417.2| PREDICTED: similar to Probable ATP-dependent helicase DDX41
           (DEAD-box protein 41) (DEAD-box protein abstrakt
           homolog) isoform 1 [Canis familiaris]
          Length = 622

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 197/361 (54%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 183 FKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 242

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 243 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMS 302

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 303 VKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 362

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + +N   + A +++   V    +Y K+
Sbjct: 363 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKE 417

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 K 351
           K
Sbjct: 538 K 538


>gi|1142710|gb|AAC50823.1| similar to DEAD box RNA helicases [Homo sapiens]
 gi|1589113|prf||2210303A RNA helicase
          Length = 875

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 210/376 (55%), Gaps = 21/376 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P+L  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 63  LEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     R++   T     LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +
Sbjct: 131 L----YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE 186

Query: 118 KLERGADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++    ++L+CTPGR+L H +        ++++LV+DEADR+LDMGF   +  +   +P 
Sbjct: 187 RIN-NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK 245

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCAL 234
            RQTLLFSAT T  ++ ++   L+NP+ + V+  +  ST  T+E  ++    Q  +K ++
Sbjct: 246 KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQ--QKISV 303

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL--EKQGFSVCAIHGNIDQRSRMKILSNFK 292
           L   L+S    K  I+F +  K V  L       + G S+ A+HG   Q  RM++ + F 
Sbjct: 304 LYSFLRSH-LKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFV 362

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                ++ A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   
Sbjct: 363 RKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPS 422

Query: 353 DIKHIDAIEKLIEKKV 368
           +      +++L++KKV
Sbjct: 423 EKA---MVQQLLQKKV 435


>gi|161723024|gb|ABX76969.1| Vasa [Parhyale hawaiensis]
          Length = 676

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 135/365 (36%), Positives = 200/365 (54%), Gaps = 19/365 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F   GL   ++  +  AGY  PTPIQ   IP ++   D+ G AQTG+GKTA+F+LP+L  
Sbjct: 242 FGASGLRDLLISNIERAGYKTPTPIQRVCIPTIMAGRDIMGCAQTGSGKTAAFLLPILHG 301

Query: 61  -----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                       +    P  +++ PTRELA Q+ +   K+  +  +   +  GG    +Q
Sbjct: 302 ILASGGGNSGSMSSTAEPSAVVVAPTRELAIQIHNEARKFALDSIVRTVVCYGGASMNSQ 361

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS--L 173
            ++L+ G  VL+ TPGR+ D   RG++  ++++ LV+DEADRMLDMGFI  I+ I +   
Sbjct: 362 YRQLQNGCAVLVATPGRLNDFVTRGRVSFSSVKYLVLDEADRMLDMGFIGDIEKIVNHQT 421

Query: 174 VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +P    RQTLLFSAT  +E+Q ++ N LQN     V T  + A T     V    +  K+
Sbjct: 422 MPAVGQRQTLLFSATFPEEIQTLACNHLQNYVFYAVGTVGA-ANTDVCQEVLNVPRQQKR 480

Query: 232 CALLQQLLQSQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             L+ ++   ++ M NG    +IF   K+    L   L  Q  +  +IHG+  Q  R + 
Sbjct: 481 EVLMSKI---EEFMANGDNKVLIFVETKRTADFLATLLSSQQLNSTSIHGDRFQSQREEA 537

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L+ FK G   ++VA+ +AARGLDI  V HV N+D+P   + Y+HRIGRTGR G  G A +
Sbjct: 538 LAQFKAGIRSILVATAVAARGLDIRGVSHVINYDLPKEVDEYVHRIGRTGRVGNKGHAVS 597

Query: 348 LVAKE 352
              +E
Sbjct: 598 FYDEE 602


>gi|169829133|ref|YP_001699291.1| ATP-dependent RNA helicase yqfR [Lysinibacillus sphaericus C3-41]
 gi|168993621|gb|ACA41161.1| Probable ATP-dependent RNA helicase yqfR [Lysinibacillus sphaericus
           C3-41]
          Length = 434

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 140/441 (31%), Positives = 224/441 (50%), Gaps = 23/441 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D    P +  A+ + G+ +PTPIQ + IPL+L+     G A TGTGKT SF++P++  
Sbjct: 5   YTDYNFQPFLQDAIAELGFTEPTPIQKEIIPLILKGKSAIGQAHTGTGKTHSFLIPIVQR 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    +I  PTRELA Q+ D   +  +   +   L IGG   +    KL+  
Sbjct: 65  IDVEKQEVQ---AVITSPTRELAQQIYDALNQLIEGTAIQAKLFIGGTDKQRSIDKLKTQ 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRI D  +   L ++   ILV+DEAD   DMGFI  I    S +P   +  +
Sbjct: 122 PQIVVGTPGRIRDLVSAQALFVHTAPILVVDEADLAFDMGFIEEIDGFASQMPEKLEMFV 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++LQ   + ++  P  + +N     AE I+   V   ++ S+   LL+ +    
Sbjct: 182 FSATIPEKLQPFLKKYMDAPVHVHMNDKRPVAEGIDFMLVPVRSK-SRNKRLLEVIEGIN 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   +IF N +K+  ++   L + G     IHG++  R R K++   ++   Q +VA+
Sbjct: 241 PFL--AVIFTNTRKSAEHVAGYLNEHGIRCGQIHGDLSPRDRKKMMKQIRDLEYQYIVAT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARG+DI  + HV N+++P   E +IHR+GRT RAG  G A TL    +   +  +EK
Sbjct: 299 DLAARGIDIQGISHVINYEIPEDLEFFIHRVGRTARAGNKGTAITLFEPSEEDAVVRVEK 358

Query: 363 LIEK--KVDWLNGDLSSLNPPLEKIDIAQHNHARKN-----NPIPQKSTGFDRRKKNYSS 415
           +     ++D  NG+ S L          +  HARKN     N I  K+    R+ K    
Sbjct: 359 MGIPFVQMDVKNGEWSEL----------KERHARKNRVKQENEIDVKAKALVRKPKKVKP 408

Query: 416 QKSHIPLKESEKISKLQQDIQ 436
                   E EKI K ++ ++
Sbjct: 409 GYKRNMKWEMEKIKKRERRLK 429


>gi|119963413|ref|YP_949241.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
 gi|119950272|gb|ABM09183.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
          Length = 576

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 127/363 (34%), Positives = 192/363 (52%), Gaps = 13/363 (3%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA LG +PK +   L A G  +  PIQ+KT+P  L   DV G  +TG+GKT +F +P++ 
Sbjct: 7   FAALG-TPKPIAESLAADGIEEAFPIQVKTLPDTLAGRDVLGRGRTGSGKTIAFAIPLVA 65

Query: 62  ILEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L +  A+       P  L+L PTRELA Q+    E   K   L   ++ GGI    Q K
Sbjct: 66  RLAEREAKHFRKPGRPMGLVLAPTRELATQINATIEPLAKAMGLNTTVIYGGISQARQEK 125

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D++I  PGR+ D   +  L +  +E+ V+DEAD M D+GF+P ++ +  + P  
Sbjct: 126 ALRAGVDIVIACPGRLEDLIRQRILTLEAVEVTVLDEADHMADLGFLPVVKKLMDMTPTQ 185

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q LLFSAT+ + + K+   +L NP    V+ P +   T+EH  +    Q  KK    Q 
Sbjct: 186 GQRLLFSATLDNGVDKLVNRYLSNPLTHSVDDPQAAVTTMEHHVLVVNDQTVKK----QL 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +++        ++F   K +   L  +L   G     +HGN+ Q +R + L+ F  G ++
Sbjct: 242 IVELASGAGRRVLFMRTKHHARKLAKTLTDAGIPAVDLHGNLSQNARDRNLAEFSNGDVR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE---DI 354
           ++VA+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   TL   E   D+
Sbjct: 302 VLVATDVAARGVHVDDVELVIHVDPPTEHKAYLHRSGRTARAGSDGTVVTLTLPEQQSDV 361

Query: 355 KHI 357
           K +
Sbjct: 362 KKL 364


>gi|256847961|ref|ZP_05553405.1| ATP-dependent RNA helicase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715021|gb|EEU29998.1| ATP-dependent RNA helicase [Lactobacillus coleohominis 101-4-CHN]
          Length = 462

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 138/382 (36%), Positives = 213/382 (55%), Gaps = 18/382 (4%)

Query: 3   FADLGLSPKVVCAVLDAG--YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           FAD  L P ++ A+      +V+PTP+Q + IP VL+  +V G +QTG+GKT +F+LP+ 
Sbjct: 5   FADFKLKPWLLTALKSKSINFVQPTPVQERVIPEVLKGENVVGQSQTGSGKTHAFLLPIF 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           ++++    RV+    ++  P+RELA Q    A    K+     LT+   +GG   E Q +
Sbjct: 65  SMMDVNEQRVQ---AVVTAPSRELATQTYNAAKQLNKFAPE-PLTIHNYVGGTDKEHQIE 120

Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +L+R    ++I TPGRILD  N G L ++     VIDEAD  LDMGF+  +  I    P 
Sbjct: 121 QLKRKQPQLVIGTPGRILDLINSGALDIHLATQFVIDEADMTLDMGFLEQVDQIAGHFPE 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q ++FSAT+   L+   + +L+NP   E+ T +     +E+  ++T  +   K +L+ 
Sbjct: 181 KLQMMVFSATIPVGLRPFLKKYLENPVVEEIPTETVINPNVENWLMSTKGR--DKNSLIY 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL   +     ++F N ++    + H L +QG  V  IHG ++ R R K++   +    
Sbjct: 239 ELLTMGEPFL-ALVFANTRERATEIYHYLTEQGLKVALIHGGLEPRERKKMMRQVRNLDF 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIK 355
           Q +VA+DLAARG+DI  V  V N D+P+  E +IHR+GRTGR   HG A TL A  ED  
Sbjct: 298 QYVVATDLAARGIDIEGVSLVINDDIPSDLEYFIHRVGRTGRGNLHGTAITLYAPYED-- 355

Query: 356 HIDAIEKLIEKKVDWLNGDLSS 377
             D I KL E+ + ++   LS+
Sbjct: 356 --DLIAKLEERGIKFIPKVLSN 375


>gi|6118555|gb|AAF04150.1|AF195417_1 DEAD-box protein abstrakt [Homo sapiens]
          Length = 621

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 197/361 (54%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 182 FKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 241

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 242 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMS 301

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 302 VKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 361

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + +N   + A +++   V    +Y K+
Sbjct: 362 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKE 416

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 417 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 476

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 477 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 536

Query: 351 K 351
           K
Sbjct: 537 K 537


>gi|326534222|dbj|BAJ89461.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 414

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 200/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 43  FDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G    +    L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 103 LDYGLVECQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASG 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 160 VHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGV 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 220 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLA 279

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 280 ITQ-----SVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V +ED + +  
Sbjct: 335 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTREDERMLFD 394

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     ++ L  +++ L
Sbjct: 395 IQKFYNVVIEELPANVADL 413


>gi|326493772|dbj|BAJ85348.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 414

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 200/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 43  FDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G    +    L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 103 LDYGLVECQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASG 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 160 VHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGV 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 220 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLA 279

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 280 ITQ-----SVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMRQFRSGSSRVL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V +ED + +  
Sbjct: 335 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTREDERMLFD 394

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     ++ L  +++ L
Sbjct: 395 IQKFYNVVIEELPANVADL 413


>gi|296194577|ref|XP_002745047.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 3
           [Callithrix jacchus]
          Length = 690

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 203/368 (55%), Gaps = 14/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 254 LTFEEANLCQTLSNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 313

Query: 61  T-ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G    R      P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 314 AHMMRDGVTASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGH 373

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S  
Sbjct: 374 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 433

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +E+Q+++  FL+ N   + V         ++   V    Q+S
Sbjct: 434 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQT-VLQVGQFS 492

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  L++ L    D  +  ++F   KK    +   L ++  S  +IHG+ +QR R + L 
Sbjct: 493 KREKLVEILRNIGD--ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALG 550

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +  
Sbjct: 551 DFRSGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFF 610

Query: 350 AKEDIKHI 357
             E   H+
Sbjct: 611 DPESDNHL 618


>gi|30584005|gb|AAP36251.1| Homo sapiens DEAD-box protein abstrakt [synthetic construct]
 gi|61369941|gb|AAX43416.1| DEAD box polypeptide 41 [synthetic construct]
 gi|61369946|gb|AAX43417.1| DEAD box polypeptide 41 [synthetic construct]
          Length = 623

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 197/361 (54%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 183 FKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 242

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 243 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMS 302

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 303 VKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 362

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + +N   + A +++   V    +Y K+
Sbjct: 363 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKE 417

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 K 351
           K
Sbjct: 538 K 538


>gi|254571525|ref|XP_002492872.1| RNA helicase in the DEAD-box family, necessary for prespliceosome
           formation [Pichia pastoris GS115]
 gi|238032670|emb|CAY70693.1| RNA helicase in the DEAD-box family, necessary for prespliceosome
           formation [Pichia pastoris GS115]
 gi|328353117|emb|CCA39515.1| ATP-dependent RNA helicase DDX46/PRP5 [Pichia pastoris CBS 7435]
          Length = 784

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 125/360 (34%), Positives = 199/360 (55%), Gaps = 6/360 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
           ++  L L  + +  + D  Y  PTPIQ + +P ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 216 EWCQLALPQQFMSVIEDLKYEAPTPIQSEALPNLMSGKDLIGIAKTGSGKTLAFLLPMFR 275

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I +        P  +IL PTRELA Q+    + + K+ NL    + GG     Q   +
Sbjct: 276 QIISQPDPESGEGPIGVILTPTRELALQIFKECKPFMKSLNLKGICVYGGASISQQISDI 335

Query: 120 ERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++     +CTPGR++D    N G++  ++    LV+DEADRM DMGF P +  I      
Sbjct: 336 KKRVHFAVCTPGRLIDLLTANSGRVTNLSRTSYLVLDEADRMFDMGFEPQVMKIIPNTRP 395

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
            RQTL+FSAT   +++ +++  L NP  + V   S  A+TI +  FV    +   K   L
Sbjct: 396 DRQTLVFSATFPPKMEALAKKVLNNPLEVIVGEKSVVADTITQKVFVIDPQERFSKLLEL 455

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
               +S+D     ++F  ++ +   L  +L K+G++  ++HG  +Q  R  I+ +FK G 
Sbjct: 456 LGTFKSKDPTGKVLVFVERQDSADVLLTNLLKRGYNAQSLHGGKEQMDRDFIIQDFKTGN 515

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+ +AARGLD+  +  V N+D PN  E+Y+HR+GRTGRAG  G+A T +  +D +
Sbjct: 516 SDILVATSVAARGLDVKRLNLVINYDSPNHMEDYVHRVGRTGRAGSTGEAVTFLTAKDYR 575


>gi|220903642|ref|YP_002478954.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219867941|gb|ACL48276.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 562

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 123/353 (34%), Positives = 193/353 (54%), Gaps = 9/353 (2%)

Query: 11  KVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV 70
           +  CA   AG+    P+Q   +P +L+  D+   ++TG+GKT  ++LPML  L    A +
Sbjct: 54  RTACA--RAGWQGLMPVQSLALPYLLEGRDIMVQSRTGSGKTGCYLLPMLPRLS---ADL 108

Query: 71  RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130
           + P+ L+L PTRELA QV        +   +    + GG+ ++ Q   L  GA +++ TP
Sbjct: 109 KAPQALVLAPTRELAVQVEREAAVLFEGTGIVTVAVYGGVGYKKQMDALRNGAQLIVGTP 168

Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR-QTLLFSATMTD 189
           GR+LDH  R  L + ++  LV DEADRML +GF P ++ I   +P  R  T LFSAT   
Sbjct: 169 GRVLDHLLRRTLDLGDLRELVFDEADRMLSIGFYPDMKEIQRYLPRRRIHTCLFSATYPP 228

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
            + K+S  F+  P  + ++        ++H F         +   L +LL++++   + I
Sbjct: 229 HVLKLSGEFMAEPAMLSLSQKEVHVAEVQHLFCEVKPMDKDRA--LVRLLETENP-ASAI 285

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           IFCN K NV  +   L+  G++   +  ++ Q  R  +L   ++G +Q +VA+D+AARG+
Sbjct: 286 IFCNTKSNVHYVAGVLQGFGYNADELSADLSQSRREAVLEKIRQGKLQYLVATDVAARGI 345

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DIP++ HVF ++ P   E+YIHR GRTGRAG  G   +LV       +D I K
Sbjct: 346 DIPELSHVFLYEPPEDHESYIHRAGRTGRAGAAGTVISLVDVMQRMELDRIAK 398


>gi|193788232|dbj|BAG53126.1| unnamed protein product [Homo sapiens]
          Length = 625

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 116/308 (37%), Positives = 185/308 (60%), Gaps = 11/308 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML------TILEKGRARVRMPR 74
           Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML        LE G      P 
Sbjct: 9   YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDG----PI 64

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            +I+ PTREL  Q+    +++GK YNL    + GG     Q K L+ GA++++CTPGR++
Sbjct: 65  AVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLI 124

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           DH  +    +  +  LV DEADRM DMGF   +++I S V   RQTLLFSAT   +++K+
Sbjct: 125 DHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKL 184

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           + + L +P R+         E +       ++  SK   L ++L++   +  + ++F  +
Sbjct: 185 ARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS-GSVLLFVTK 243

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++VA+D+AARGLDIP +
Sbjct: 244 KANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSI 303

Query: 315 GHVFNFDV 322
             V N+DV
Sbjct: 304 KTVINYDV 311


>gi|324328191|gb|ADY23451.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 436

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 215/378 (56%), Gaps = 14/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L  
Sbjct: 6   FTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           +  GR  V++   +I  PTRELA Q+ +   K  K    +  +T   LIGG   +   +K
Sbjct: 66  INPGREEVQL---VITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ- 237
           Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +  ++  K  L+++ 
Sbjct: 183 QMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPS--KHRNKIDLVKRM 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ +  +   ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 241 LLQFKPYL--AVVFTNTKKMADQVADGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGYSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|281342094|gb|EFB17678.1| hypothetical protein PANDA_018093 [Ailuropoda melanoleuca]
          Length = 613

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 197/361 (54%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 174 FKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 233

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 234 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMS 293

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 294 VKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 353

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + +N   + A +++   V    +Y K+
Sbjct: 354 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKE 408

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 409 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 468

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 469 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 528

Query: 351 K 351
           K
Sbjct: 529 K 529


>gi|148222920|ref|NP_001089088.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Xenopus laevis]
 gi|114107928|gb|AAI23292.1| Ddx10 protein [Xenopus laevis]
          Length = 663

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 135/372 (36%), Positives = 207/372 (55%), Gaps = 12/372 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  +++A Y  PT IQ +TI L LQ  DV G A+TG+GKT +F++P L  
Sbjct: 76  FSDFPLSKKTLRGLVEAQYRLPTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFIIPALEC 135

Query: 63  LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         LI+ PTRELA Q  +   K G+N+  +  L+IGG   + +   + R
Sbjct: 136 LYRQQWTSDDGLGVLIISPTRELAYQTFEVLRKVGRNHEFSAGLVIGGKDLKQETACIHR 195

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++LICTPGR+L H +       +N+ +LV+DEADR+LDMGF   +  I   +P  RQT
Sbjct: 196 -TNILICTPGRLLQHMDETSFFHASNLHMLVLDEADRILDMGFADTMNAIIENLPKKRQT 254

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT T  ++ ++   L++P+ + V+  +  ST  T+E  ++    Q  +K  LL   
Sbjct: 255 LLFSATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLEQNYIVCELQ--QKINLLYSF 312

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSL--EKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +++    K  I+F +  K V  L  +    + G  V  +HG   Q  RM++ ++F     
Sbjct: 313 IRNH-LKKKSIVFFSSCKEVQYLFRAFCRLRPGIPVLVLHGKQQQTKRMEVYNDFIRKKS 371

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++ A+D+AARGLD P V  V   D P  A  YIHR+GRT R    G+A  ++   ++K 
Sbjct: 372 AVLFATDIAARGLDFPAVSWVLQLDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEVKG 431

Query: 357 IDAIEKLIEKKV 368
           +   ++L EKKV
Sbjct: 432 M--AKQLEEKKV 441


>gi|153939716|ref|YP_001391033.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum F str.
           Langeland]
 gi|152935612|gb|ABS41110.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. Langeland]
 gi|295319089|gb|ADF99466.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. 230613]
          Length = 421

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 113/362 (31%), Positives = 208/362 (57%), Gaps = 8/362 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L+PK+V  +       PT IQ + IPL ++  D+ G ++TGTGKT +++LP   I
Sbjct: 5   FDTLNLNPKLVQGLKKLNINIPTEIQAEAIPLAMENKDIIGQSETGTGKTLAYLLP---I 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA--LLIGGIPFEAQNKKLE 120
            EK     R  + +IL PT ELA Q+ +  +    N N+ V    +IG    + Q +KL+
Sbjct: 62  FEKITTEKREMQAIILAPTHELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ +PGRIL+   + K+  + ++ +VIDE D++LD   +  ++ +       RQ 
Sbjct: 122 EKPHIIVGSPGRILELIKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQL 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+T+    ++++ +++ + ++V   ++  E I+H ++    ++ ++  +L++L+ 
Sbjct: 182 MLFSATITESTLNIAKDLMKDSEVVKVKEKNTVNENIKHLYIT--GEHRERIEILRKLIA 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +  K  I+F N+ + +      L+        I+G  ++  R K L +F+ G +Q++V
Sbjct: 240 ATNP-KRAIVFINRNEEIELTTLKLQYHKIKAYGIYGAAEKEQRKKALEDFRSGKVQILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +SDL+ARGLD+ DV H+FN D+P   + Y+HR+GRTGRA + G A +++ +++   I   
Sbjct: 299 SSDLSARGLDVKDVTHIFNLDLPENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRKY 358

Query: 361 EK 362
           EK
Sbjct: 359 EK 360


>gi|327273954|ref|XP_003221744.1| PREDICTED: probable ATP-dependent RNA helicase DDX10-like [Anolis
           carolinensis]
          Length = 851

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 134/376 (35%), Positives = 212/376 (56%), Gaps = 20/376 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  + +A Y   T IQ +TI L L   DV G A+TG+GKT +F++P L I
Sbjct: 70  FSDFPLSKKTLKGLQEAQYRMVTEIQRQTIGLALLGKDVLGAAKTGSGKTLAFIVPALEI 129

Query: 63  LEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     R +   T     LI+ PTRELA Q  +   K GKN++ +  L+IGG   + +  
Sbjct: 130 L----YRQQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLVIGGKDLKQEAD 185

Query: 118 KLERGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++    ++LICTPGR+L H +       +++++L++DEADR+LDMGF   +  I   +P 
Sbjct: 186 RI-HNINILICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENLPK 244

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCAL 234
            RQTLLFSAT T  ++ ++   L++P+ + V+  +  ST  T+E  ++    +  +K ++
Sbjct: 245 KRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLEQNYIV--CELHQKISM 302

Query: 235 LQQLLQSQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           L   L+S    K+ + F  C + + +  +   L + G  + A+HG   Q  RM++ ++F 
Sbjct: 303 LYSFLRSHLNKKSIVFFASCKEVQYLFRVFCRL-RPGLPILALHGKQQQMKRMEVYTDFV 361

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                ++ A+DLAARGLD P V  V  FD P  A  YIHR+GRT R    G+A  ++ K 
Sbjct: 362 RKKSAVLFATDLAARGLDFPAVNWVIQFDCPEDANTYIHRVGRTARYKEGGEALLVLIKS 421

Query: 353 DIKHIDAIEKLIEKKV 368
           +   +  I++L +KKV
Sbjct: 422 EENGM--IQQLSQKKV 435


>gi|224046936|ref|XP_002196956.1| PREDICTED: putative DEAD box polypeptide 48 [Taeniopygia guttata]
          Length = 341

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 121/337 (35%), Positives = 188/337 (55%), Gaps = 11/337 (3%)

Query: 45  AQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA 104
           +Q+GTGKTA+F + +L  L+    +VR  + LIL PTRELA Q+       G   N+   
Sbjct: 12  SQSGTGKTATFSISVLQCLD---IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCH 68

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
             IGG       +KL+ G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF 
Sbjct: 69  ACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFK 128

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
             I ++   +P   Q +L SAT+  E+ +++  F+ +P RI V     T E I+  FVA 
Sbjct: 129 EQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV 188

Query: 225 YAQ---YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
             +   +   C L   L     T+   +IFCN K+ V  L   + +  F+V ++HG++ Q
Sbjct: 189 EREEWKFDTLCDLYDTL-----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQ 243

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           + R  I+  F+ G  ++++++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR
Sbjct: 244 KERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGR 303

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            G A   V  +DI+ +  IE+    ++D +  +++ L
Sbjct: 304 KGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL 340


>gi|114669840|ref|XP_001147133.1| PREDICTED: DEAD box polypeptide 42 protein isoform 1 [Pan
           troglodytes]
          Length = 625

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 116/308 (37%), Positives = 185/308 (60%), Gaps = 11/308 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML------TILEKGRARVRMPR 74
           Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PML        LE G      P 
Sbjct: 9   YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDG----PI 64

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            +I+ PTREL  Q+    +++GK YNL    + GG     Q K L+ GA++++CTPGR++
Sbjct: 65  AVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLI 124

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           DH  +    +  +  LV DEADRM DMGF   +++I S V   RQTLLFSAT   +++K+
Sbjct: 125 DHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKL 184

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           + + L +P R+         E +       ++  SK   L ++L++   +  + ++F  +
Sbjct: 185 ARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS-GSVLLFVTK 243

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++VA+D+AARGLDIP +
Sbjct: 244 KANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSI 303

Query: 315 GHVFNFDV 322
             V N+DV
Sbjct: 304 KTVINYDV 311


>gi|3122189|sp|Q26696|DDX17_TRYBB RecName: Full=Putative DEAD-box RNA helicase HEL64
 gi|1166504|gb|AAC46964.1| HEL64 [Trypanosoma brucei]
          Length = 568

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 128/377 (33%), Positives = 211/377 (55%), Gaps = 16/377 (4%)

Query: 7   GLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--IL 63
           G+ P  +   L A  +  PTP+Q ++ P++L   D+ G+A+TG+GKT  F++P L    +
Sbjct: 107 GIVPPYLLKKLTAQNFTAPTPVQAQSWPVLLSGRDLVGVAKTGSGKTLGFMVPALAHIAV 166

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
           ++       P  ++L PTRELA Q+ +  +K     ++    + GG P   Q   L RG 
Sbjct: 167 QEPLRSGDGPMVVVLAPTRELAQQIEEETKKVIPG-DVYCGCVYGGAPKGPQLGLLRRGV 225

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            +L+ TPGR++D  +  ++ ++ +  LV+DEADRMLDMGF P ++ I   +   RQT++F
Sbjct: 226 HILVATPGRLIDFLDIKRINLHRVTYLVLDEADRMLDMGFEPQVRKICGQIRPDRQTVMF 285

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           SAT   E+Q+++  F +   RI V +    A + +   F+ T  Q   K   L++L+Q  
Sbjct: 286 SATWPREIQRLAAEFQKQWIRISVGSTELQANKDVTQRFILT--QEFAKQDELRKLMQEH 343

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  ++FC  K+    L   L + G+   AIHG+ +QR R  IL+ F++     +VA+
Sbjct: 344 REERV-LVFCKMKRTADELERQLRRWGYDAMAIHGDKEQRQREFILARFRKDPRLCLVAT 402

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK------- 355
           D+AARGLDI  +  V N+D P + ++Y+HRIGRTGRAG  G+   L+ K++ +       
Sbjct: 403 DVAARGLDIKQLETVINYDFPMQIDDYVHRIGRTGRAGGEGRCVYLITKKEAQITPSVLK 462

Query: 356 -HIDAIEKLIEKKVDWL 371
             I  +E+  ++  DW+
Sbjct: 463 ELIGILERAQQEIPDWM 479


>gi|321473575|gb|EFX84542.1| hypothetical protein DAPPUDRAFT_223010 [Daphnia pulex]
          Length = 869

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 139/394 (35%), Positives = 217/394 (55%), Gaps = 27/394 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS K +  +    Y  PT +Q ++I L L+  DV G A+TG+GKT +FV+P+L
Sbjct: 67  LKFKDIPLSKKTLQGLQQNEYTTPTEVQKESIVLALRGLDVLGAAKTGSGKTLAFVIPVL 126

Query: 61  TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L      R+     LI+ PTRELA Q+ + F K G  ++ +  L+IGG     + K+L
Sbjct: 127 ERLYCMQWTRLDGLGALIITPTRELAYQIFETFRKVGIQHDFSAGLIIGGKDLNFERKRL 186

Query: 120 ERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++  +++ICTPGR+L H +   L   +N++ILVIDEADR LD+GF   +  I   +P  R
Sbjct: 187 DQ-CNIMICTPGRVLHHMDENPLFDCSNLQILVIDEADRCLDLGFQQTMNGIIENLPPKR 245

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           QTLLFSAT T  ++ ++   L++P  + V  N   ST E++   ++ T  Q   K  +L 
Sbjct: 246 QTLLFSATQTKSVKDLARLSLKDPVYVSVHENAQYSTPESLRQSYIITPIQ--NKVDILW 303

Query: 237 QLLQSQDTMKNGIIFCNQKKNV--VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             L+S    K  I+F    K V  ++   +  + G SV A++G + Q  RM +   F E 
Sbjct: 304 SFLRSH-RKKKLIVFLTSCKQVRFIHQAFTRLRPGLSVLALYGTMHQMKRMSVYEEFCEK 362

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA-FTLVAKED 353
              ++ A+D+AARGLD P+V  V   D P+   +YIHR GRT R  + G++   L+  E+
Sbjct: 363 QTAVLFATDIAARGLDFPNVDWVIQMDCPDDPSSYIHRAGRTARYQKGGESLLMLLPSEE 422

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
                 +E+L +KK+            P++KI++
Sbjct: 423 A----MVEQLAQKKI------------PIQKIEV 440


>gi|259145479|emb|CAY78743.1| Prp28p [Saccharomyces cerevisiae EC1118]
          Length = 588

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 141/402 (35%), Positives = 216/402 (53%), Gaps = 31/402 (7%)

Query: 2   DFADLGLSPKVVCAVL--DAGYVKPTPIQIKTIPLVL---QRHDVCGIAQTGTGKTASFV 56
           ++ +L + P+ +  V+  +  +  PTPIQ  TIP V    Q  D  G+A TG+GKT +FV
Sbjct: 173 NWEELNIIPRDLLRVIIQELRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFV 232

Query: 57  LPMLTILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGK------NYNLTVA 104
           +P+L  + +   R      +  P+ LIL PTREL  Q+    +K  K      NY+  V 
Sbjct: 233 IPILIKMSRSPPRPPSLKIIDGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVI 292

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
            ++GG   E  +  L  G D+L+ TPGR++D      L+M  +E LV+DEAD+M+D+GF 
Sbjct: 293 SIVGGHSLEEISFSLSEGCDILVATPGRLIDSLENHLLVMKQVETLVLDEADKMIDLGFE 352

Query: 165 PYIQNITSLV------PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
             + NI + V         RQTL+F+ATMT  ++K++  ++Q P    +   + +   I+
Sbjct: 353 DQVTNILTKVDINADSAVNRQTLMFTATMTPVIEKIAAGYMQKPVYATIGVETGSEPLIQ 412

Query: 219 HCFVATYAQYSK-KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ-GFSVCAIH 276
              V  YA   + K   L+ ++   D     IIF N K+    L    +K+    V  +H
Sbjct: 413 Q--VVEYADNDEDKFKKLKPIVAKYDPPI--IIFINYKQTADWLAEKFQKETNMKVTILH 468

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G+  Q  R   L  F+   +Q+M+A+++AARGLDIP+V  V NF +  + ++YIHRIGRT
Sbjct: 469 GSKSQEQREHSLQLFRTNKVQIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRT 528

Query: 337 GRAGRHGKAFTLV-AKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
           GRA   G A + V A ED   I  + K + +K D LN ++ S
Sbjct: 529 GRAANEGTAVSFVSAAEDESLIRELYKYV-RKHDPLNSNIFS 569


>gi|47827092|dbj|BAD21122.1| ATP-dependent RNA helicase [Hordeum vulgare subsp. vulgare]
 gi|326532610|dbj|BAK05234.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 764

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 129/374 (34%), Positives = 209/374 (55%), Gaps = 12/374 (3%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILE 64
           LGL  ++V  +   G     PIQ   +   L+  D+   A+TGTGKT +F +PM+  I+E
Sbjct: 96  LGLPAQLVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGIPMIKQIIE 155

Query: 65  K--GR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +  GR   R R+PR L+L PTRELA QV     +      L+   + GG+ +  Q   L 
Sbjct: 156 QDEGRTPGRGRIPRALVLAPTRELAKQVEKEIMESAPK--LSTVCVYGGVSYNTQQNALS 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR++D  N G L +  +  LV+DEAD+ML +GF   ++ I   +P  RQ+
Sbjct: 214 RGVDVVVGTPGRLIDLINGGSLQLGEVRYLVLDEADQMLAVGFEEDVETILQQLPAERQS 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +LFSATM   ++K+S  +L NP  I++  +     AE I+  F       SK+  +L  L
Sbjct: 274 MLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIK-LFAIPLTTTSKRT-ILSDL 331

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +         I+F   K++   +  +L     +  A+HG+I Q  R + L+ F++G   +
Sbjct: 332 ITVYAKGGKTIVFTRTKRDADEVSLALTTS-IASEALHGDISQHQRERTLNGFRQGKFTV 390

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RGLDIP+V  + ++++PN  E ++HR GRTGRAG+ G A  +      + + 
Sbjct: 391 LVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGNAILMFTTNQRRTVK 450

Query: 359 AIEKLIEKKVDWLN 372
           ++E+ +  K +++ 
Sbjct: 451 SLERDVGCKFEFIG 464


>gi|299535847|ref|ZP_07049168.1| ATP-dependent RNA helicase yqfR [Lysinibacillus fusiformis ZC1]
 gi|298729047|gb|EFI69601.1| ATP-dependent RNA helicase yqfR [Lysinibacillus fusiformis ZC1]
          Length = 433

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 141/443 (31%), Positives = 225/443 (50%), Gaps = 27/443 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D    P +  A+ + G+ +PTPIQ + IPL+L+     G A TGTGKT SF++P++  
Sbjct: 4   YTDYNFQPFLQDAIANLGFTEPTPIQKEIIPLLLKGKSAIGQAHTGTGKTHSFLIPIVQR 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    +I  PTRELA Q+ D   +  +   +   L IGG   +    KL+  
Sbjct: 64  IDVEKQEVQ---AVITSPTRELAQQIFDALNQLIEGTAIQAKLFIGGTDKQRSIDKLKTQ 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRI D  +   L ++   ILV+DEAD   DMGFI  I    S +P   +  +
Sbjct: 121 PQIVVGTPGRIRDLVSAQALFVHTAPILVVDEADLAFDMGFIEEIDGFASQMPEKLEMYV 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++LQ   + +++ P  + +N     AE I+   V   ++ S+   LL+ +    
Sbjct: 181 FSATIPEKLQPFLKKYMEAPVHVHMNDKRPVAEGIDFVLVPVRSK-SRNKRLLEVIEGIN 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   +IF N +K   ++   L + G     IHG++  R R K++   ++   Q +VA+
Sbjct: 240 PFL--AVIFTNTRKTAEHVAGYLNEHGIRCGQIHGDLSPRDRKKMMKQIRDLDYQYIVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARG+DI  + HV N+++P   E +IHR+GRT RAG  G A TL    D   +  +EK
Sbjct: 298 DLAARGIDIQGISHVINYEIPEDLEFFIHRVGRTARAGNKGTAITLFEPSDEDAVVRVEK 357

Query: 363 L----IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN-----NPIPQKSTGFDRRKKNY 413
           +    ++K V   +G+ S L          +  HARKN     N I  K+    R+ K  
Sbjct: 358 MGIPFVQKDVK--DGEWSEL----------KERHARKNRVKQENEIDVKAKSLVRKPKKV 405

Query: 414 SSQKSHIPLKESEKISKLQQDIQ 436
                     E EKI K ++ ++
Sbjct: 406 KPGYKRNMKWEMEKIKKRERRLK 428


>gi|50302639|ref|XP_451255.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660701|sp|Q6CXT4|IF4A_KLULA RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|49640386|emb|CAH02843.1| KLLA0A05731p [Kluyveromyces lactis]
          Length = 396

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 131/377 (34%), Positives = 214/377 (56%), Gaps = 7/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L  +++  +   G+V+P+ IQ + I  +++  DV   AQ+GTGKT +F +  L  
Sbjct: 24  FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++   +++ P+ LIL PTRELA Q+         + ++ V   IGG   +  ++ L  G
Sbjct: 84  IDE---KIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A +++ TPGR+ D  +R     +NI++ ++DEAD ML  GF   I NI +++P T Q +L
Sbjct: 141 AQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQLLQS 241
            SATM  ++ +V+  F+++P RI V     T E I   +V     QY   C  L  L  S
Sbjct: 201 LSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDC--LTDLYDS 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   L +  F+V AI+ ++ Q+ R  I+  F+ G+ +++++
Sbjct: 259 I-SVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILIS 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V  +DI  +  +E
Sbjct: 318 TDLLARGIDVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGIAINFVTNKDIGAMRELE 377

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ L   +S L
Sbjct: 378 RFYSTQIEELPSSISEL 394


>gi|60551791|gb|AAH90996.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Mus musculus]
          Length = 734

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 206/353 (58%), Gaps = 17/353 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ+KT   V +  D+   A+TGTGKT SF +P++  
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195

Query: 63  LEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ +  +   R P+ L+L PTRELA QVA +F+   +   L+VA   GG  +++Q  ++
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINQI 253

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   G+L ++ +  +V+DE D+MLD+GF   +++I      T  
Sbjct: 254 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 313

Query: 179 ----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
               QTLLFSAT    + KV++ ++++  +++++        A T+EH  +A    +S++
Sbjct: 314 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEH--LAIQCHWSQR 371

Query: 232 CALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A++  +LQ    +    IIFC  KKNV  +  +   +  + C +HG+I Q  R   L  
Sbjct: 372 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKG 430

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           F+EG+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 431 FREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 483


>gi|18857967|ref|NP_572424.1| CG10777 [Drosophila melanogaster]
 gi|7290853|gb|AAF46295.1| CG10777 [Drosophila melanogaster]
 gi|16648356|gb|AAL25443.1| LD32873p [Drosophila melanogaster]
 gi|220947598|gb|ACL86342.1| CG10777-PB [synthetic construct]
          Length = 945

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 125/378 (33%), Positives = 207/378 (54%), Gaps = 14/378 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   V+  +   G+ KPT IQ +  P+ L   D+ GIAQTG+GKT +++LP +
Sbjct: 237 VSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAI 296

Query: 61  TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQN 116
             +      +R   P  L+L PTRELA Q+      YG      +    + GG     Q 
Sbjct: 297 VHIGNQPPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQA 356

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+RG +V+I TPGR++D        +     LV+DEADRMLDMGF P I+ I   +  
Sbjct: 357 RDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 416

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKK 231
            RQ +++SAT   E+Q ++ +FL +  +I + + + +A     + +E C      Q  + 
Sbjct: 417 DRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQ--RL 474

Query: 232 CALLQQLLQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
             LL ++   +++  NG   I+F   K  V ++   +  +G++  +IHG+  Q  R  +L
Sbjct: 475 VCLLNEISPIKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVL 534

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +F+ G   +++A+D+A+RGLD+ D+ +V N+D PN +ENY+HRIGRTGR  + G A+T 
Sbjct: 535 KDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTF 594

Query: 349 VAKEDIKHIDAIEKLIEK 366
              ++ K    +  ++E+
Sbjct: 595 FTPDNAKQARELISVLEE 612


>gi|316973448|gb|EFV57036.1| ATP-dependent RNA helicase DBP8 [Trichinella spiralis]
          Length = 563

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 131/378 (34%), Positives = 208/378 (55%), Gaps = 22/378 (5%)

Query: 5   DLGLSPKVV--CAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           DLGLS  +V  CAV+  G V+P+P+Q+  IP +L   D  G ++TGTGKT +F +P++  
Sbjct: 109 DLGLSSWLVEQCAVM--GIVEPSPVQLNCIPEILIGKDAIGCSKTGTGKTLAFAIPIIQR 166

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     L+L P+RELA Q+ + F+  GK   L  ++++GG     Q  ++   
Sbjct: 167 LSEDPYGIY---ALVLTPSRELAFQIGEQFQVLGKPLGLRTSIVVGGRDMIEQANEIANQ 223

Query: 123 ADVLICTPGRILDHF--NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             +LI TPGR+ DH      +   + I+  V+DEADR+LD  +   ++ I   +P  RQT
Sbjct: 224 PHILIATPGRLADHILSRSDENWFHKIKFFVLDEADRLLDGQYDLQLETIIEKLPKERQT 283

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-------TYAQYSKKCA 233
           LLFSAT+TD L ++ E  ++ P   +  + + T +T+E  +V         Y  Y  K  
Sbjct: 284 LLFSATITDALCRLQELSVKKPFFWQEQSCTVTVDTLEQRYVLCPKSVKDAYVTYVVK-- 341

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
               L   ++   + +IF +       L       GF V A+H  I QR R+   + FK 
Sbjct: 342 ----LFTDKNPQSSVLIFSHSCYECQALTLMFADLGFKVGALHSMISQRERLSSFNLFKS 397

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             +++++ +D+A+RGLD+P V  V N ++P  A+ YIHR+GR+ RAGR G+A T + + D
Sbjct: 398 NQLKILICTDVASRGLDLPFVDLVINHNIPAVAKTYIHRVGRSARAGRSGRAVTFITQYD 457

Query: 354 IKHIDAIEKLIEKKVDWL 371
           I  + AIEK I  +++ L
Sbjct: 458 IALLQAIEKAINCQMNEL 475


>gi|311069115|ref|YP_003974038.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
 gi|310869632|gb|ADP33107.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
          Length = 438

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 133/382 (34%), Positives = 208/382 (54%), Gaps = 16/382 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L P ++ AV   G+ +PT IQ + IP VL+R  V G +QTGTGKT +++LP+L  
Sbjct: 6   FELYDLKPFIIDAVHRLGFYEPTDIQKRLIPAVLKRESVIGQSQTGTGKTHAYLLPLLNE 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY---NLTVALLIGGIPFEAQNKKL 119
           ++  +  V+    +I  PTRELA Q+     K  ++    ++     IGG   +    KL
Sbjct: 66  IDPNKDVVQ---AVITAPTRELANQIHQEALKITESMTDDSIRSKCFIGGTDKQKSIDKL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +++ TPGRI D      L +   + LVIDEAD MLDMGFI  +  I S +P   Q
Sbjct: 123 KTQPHLVVGTPGRIADLIKEQALNVYKAKSLVIDEADLMLDMGFIADVDYIGSRMPEDLQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+ ++L+   + +++NPK   V     TAE IEH  + +  ++  K  LL  ++
Sbjct: 183 MLVFSATIPEKLKPFLKKYMENPKYAHVEPKQITAEKIEHVLIPS--KHRDKDKLLFDIM 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+    GI+F N K    ++   L  +G  +  +HG +  R R K++    +     +
Sbjct: 241 SHQNPYL-GIVFANTKNTADHIASYLTGKGMKIGLLHGGLTPRERKKVMKQINDLEFTYV 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+DLAARG+DI  V HV N+++P+  + Y+HR+GRT RAG  G+A T+    D   +  
Sbjct: 300 IATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQAMTIYELSDEDALVK 359

Query: 360 IEKL------IE-KKVDWLNGD 374
           +EK+      +E +K +W  GD
Sbjct: 360 LEKMGIVFEYVELEKGEWKKGD 381


>gi|297846156|ref|XP_002890959.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336801|gb|EFH67218.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 539

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 125/341 (36%), Positives = 196/341 (57%), Gaps = 8/341 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILEK-----GRARVRMPR 74
           + KP+PIQ  T P +L   D+ GIA+TG+GKT +F +P ++ +L+K     G ++   P 
Sbjct: 136 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKLGGGSKNVNPT 195

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTRELA Q++D   + G+   L    + GG     Q   +  G D++I TPGR+ 
Sbjct: 196 CLVLSPTRELAVQISDVLSEAGEPCGLKSICVYGGSSKRPQINAIRSGVDIVIGTPGRLR 255

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D     +L ++++  +V+DEADRMLDMGF   ++ I S     RQ ++FSAT   ++ K+
Sbjct: 256 DLIESNELRLSDVSFVVLDEADRMLDMGFEEPVRFILSKTNKVRQMVMFSATWPLDVHKL 315

Query: 195 SENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI-IFC 252
           ++ F+  NP ++ + +    A       +    + ++   L+  L +   + KN + +F 
Sbjct: 316 AQEFMDPNPIKVVIGSVDLAANHDVMQIIEVLDERARDQRLVALLEKYHKSQKNRVLVFA 375

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             K     L   L+++G+   +IHGN  Q  R + LS FKEG+  L+VA+D+AARGLDIP
Sbjct: 376 LYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIP 435

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           DV  V N+  P   E+Y+HRIGRTGRAG+ G A T   +++
Sbjct: 436 DVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQN 476


>gi|45709415|gb|AAH67878.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Homo sapiens]
          Length = 631

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 128/393 (32%), Positives = 215/393 (54%), Gaps = 7/393 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK---G 66
           P ++ +++  G +KPTPIQ +  P++LQ  D+  +AQTGTGKT S+++P    L+     
Sbjct: 231 PDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS 290

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTRELA  V     KY     L    + GG     Q + + +G D++
Sbjct: 291 REQRNGPGMLVLTPTRELALHVEAECSKYSYK-GLKSICIYGGRNRNGQIEDISKGVDII 349

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + +I  LVIDEAD+MLDM F P I+ I   V   RQT++ SAT
Sbjct: 350 IATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSAT 409

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
             D +++++ ++L++P  + V   +  A  T++   + T  +  +K AL Q+ +++    
Sbjct: 410 WPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEK--EKRALTQEFVENMSPN 467

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F +QK    +L      QG S  ++HGN +Q  + + + +FK G I++++ +D+ 
Sbjct: 468 DKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIV 527

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLD+ DV HV+N+D P   + Y+HR+G  GR G+ G + TL+ + D K    + K+++
Sbjct: 528 SRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELIKILD 587

Query: 366 KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           +    +  DL  +    +     +H   R   P
Sbjct: 588 RANQSVPEDLVVMAEQYKLNQQKRHRETRSREP 620


>gi|302656972|ref|XP_003020220.1| ATP-dependent RNA helicase, putative [Trichophyton verrucosum HKI
           0517]
 gi|291184030|gb|EFE39602.1| ATP-dependent RNA helicase, putative [Trichophyton verrucosum HKI
           0517]
          Length = 528

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 140/382 (36%), Positives = 211/382 (55%), Gaps = 17/382 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL+P +V ++      +PT IQ   IP +++  D  G ++TG+GKT +F  P   I
Sbjct: 101 FSSLGLAPWLVSSLKAMEIKRPTAIQKSCIPEIIKGRDCIGGSRTGSGKTVAFAAP---I 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K          +IL PTRELA Q+ +  +      +L   L+ GG     Q   L + 
Sbjct: 158 LHKWSEDPFGIYAVILTPTRELALQIFEQVKAISAPQSLKPLLITGGSDMRPQAIGLSQR 217

Query: 123 ADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSLVP 175
             ++I TPGR+ DH         + +  + ++V+DEADR+L  G    +P ++   S +P
Sbjct: 218 PHIVIATPGRLADHIKSSGEDTIIGLKRVRMVVLDEADRLLTSGPGSMLPDVETCLSALP 277

Query: 176 FT--RQTLLFSATMTDELQKV-SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY--SK 230
            +  RQTLLF+AT+T E++ + S    +N   I V   S+   TI      TY Q   + 
Sbjct: 278 PSSDRQTLLFTATVTPEVRALKSMPRAKNKPPIFVTEISTENTTIPPTLKQTYLQVPLNH 337

Query: 231 KCALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A LQ LL ++ ++ K+ IIFCN+ K    L   L +    V ++H  + Q  R+  LS
Sbjct: 338 REAFLQVLLSTEGNSSKSTIIFCNRTKTADLLERILRRLSHRVTSLHSLLPQSERVANLS 397

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+    +L+VA+D+AARGLDIP VG V N+DVP   ++YIHR+GRT RAGR G+A TLV
Sbjct: 398 RFRASAARLLVATDVAARGLDIPSVGLVINYDVPRNPDDYIHRVGRTARAGREGEAITLV 457

Query: 350 AKEDIKHIDAIEKLIEKK-VDW 370
            + D++ + AIE  + K+ V W
Sbjct: 458 GQRDVQLVLAIEARVGKQMVAW 479


>gi|217961776|ref|YP_002340346.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|222097732|ref|YP_002531789.1| ATP-dependent RNA helicase, dead/deah box family [Bacillus cereus
           Q1]
 gi|229141022|ref|ZP_04269565.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST26]
 gi|217063251|gb|ACJ77501.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|221241790|gb|ACM14500.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           Q1]
 gi|228642455|gb|EEK98743.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST26]
          Length = 436

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 215/378 (56%), Gaps = 14/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L  
Sbjct: 6   FTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           +  GR  V++   +I  PTRELA Q+ +   K  K    +  +T   LIGG   +   +K
Sbjct: 66  INPGREEVQL---VITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ- 237
           Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +  ++  K  L+++ 
Sbjct: 183 QMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPS--KHRNKIDLVKRM 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ +  +   ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 241 LLQFKPYL--AVVFTNTKKMADQVADGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGYSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|154300880|ref|XP_001550854.1| hypothetical protein BC1G_10578 [Botryotinia fuckeliana B05.10]
 gi|160380613|sp|A6SCT6|DBP3_BOTFB RecName: Full=ATP-dependent RNA helicase dbp3
 gi|150856326|gb|EDN31518.1| hypothetical protein BC1G_10578 [Botryotinia fuckeliana B05.10]
          Length = 592

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 126/341 (36%), Positives = 188/341 (55%), Gaps = 18/341 (5%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           +  PTPIQ    P +L   DV G+A+TG+GKT +F +P +    KG      PR +++ P
Sbjct: 206 FKAPTPIQAAAWPFLLAGRDVIGVAETGSGKTMAFAVPCIN---KG------PRAVVVSP 256

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TRELA Q  +   K  K   L    + GG+P + Q + L + AD+++ TPGR+ D  N+G
Sbjct: 257 TRELAMQSYEQIVKLAKASGLECVCVYGGVPKDEQIRAL-KTADIVVATPGRLNDLINQG 315

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TRQTLLFSATMTDELQKVSENF 198
              ++    +V+DEADRMLD GF   I+ I +  P    RQTL+F+AT  + +++++  F
Sbjct: 316 CADLSKARYVVLDEADRMLDKGFEEEIRKIINTTPSLGKRQTLMFTATWPESVRELAATF 375

Query: 199 LQNPKRIEV-NTPSSTAETIEHCF--VATYAQYSKKCALLQQLLQSQDTMKNG---IIFC 252
           + +P +I + + P+            V       K+  L+Q L Q Q   +     ++FC
Sbjct: 376 MTSPVKIAIGDNPTGDLRANSRIVQKVEVVEPRDKEYRLMQLLKQYQSGSQKDDRILVFC 435

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             KK    +   + ++GF V  IHG++ Q  R + L  FK G   ++VA+D+AARGLDIP
Sbjct: 436 LYKKEATRVESFIRQKGFRVAGIHGDLSQEQRTRSLEAFKSGNTPVLVATDVAARGLDIP 495

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            V  V N   P   E+Y+HRIGRTGRAG+ G A TL  + D
Sbjct: 496 AVKLVINCTFPLTVEDYVHRIGRTGRAGKDGLAITLFTEHD 536


>gi|229493377|ref|ZP_04387166.1| ATP-dependent RNA helicase [Rhodococcus erythropolis SK121]
 gi|229319693|gb|EEN85525.1| ATP-dependent RNA helicase [Rhodococcus erythropolis SK121]
          Length = 455

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 129/359 (35%), Positives = 194/359 (54%), Gaps = 8/359 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+   +V A+ D G   P PIQI T+P  L   DV G  +TG+GKT +F +PM++ 
Sbjct: 11  FAALGVRAPLVKALEDGGITSPFPIQIDTLPDTLSGRDVLGRGKTGSGKTLAFSIPMVSR 70

Query: 63  L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L      G+ R   P  L+L PTRELA Q+    E     Y+L V  + GG+    Q + 
Sbjct: 71  LAGELSGGKRRPGRPLGLVLAPTRELATQITATLEPLAAAYDLRVTTIFGGVSQHRQVQA 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+++  PGR+ D   +  + ++ +EI V+DEAD M D+GF+P +  I S  P   
Sbjct: 131 LKAGVDIVVACPGRLEDLMKQKFVSLDAVEITVLDEADHMADLGFLPVVTRILSSTPQDG 190

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT+ + + K+ + FL+N     V+  +S    + H         +KK AL+++L
Sbjct: 191 QRLLFSATLDNGVDKLVKRFLKNEVMHSVDEANSPVAAMTHHVFDVDGVEAKK-ALVEKL 249

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +  T +  I+F   K     L   L + G     +HGN+ Q +R + L+ F  G  ++
Sbjct: 250 --ASGTGRR-ILFMRTKHQARKLARQLTESGIPSVDLHGNLSQAARDRNLAAFSAGEARV 306

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +VA+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   T+V  E  K +
Sbjct: 307 LVATDVAARGVHVDDVELVVHVDPPAEHKAYLHRSGRTARAGSAGDVVTVVLPEQRKDL 365


>gi|332025035|gb|EGI65222.1| ATP-dependent RNA helicase DDX54 [Acromyrmex echinatior]
          Length = 776

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 125/356 (35%), Positives = 203/356 (57%), Gaps = 4/356 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  ++  +L  GY  PTPIQ KTIPL L+  D+  +A+TG+GKTA F++P+   
Sbjct: 38  FQSMALSFPILKGILKRGYKIPTPIQRKTIPLALEGRDIVAMARTGSGKTACFLIPLFEK 97

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  +A+    R LIL PTRELA Q     ++ G+   L  A+++GG   + Q   +   
Sbjct: 98  LKVRQAKT-GARALILSPTRELALQTLKFIKELGRFTGLKSAVILGGDSMDNQFSAIHGN 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR L       L + NIE +V DEADR+ +MGF   IQ I + +P +RQTLL
Sbjct: 157 PDIIVATPGRFLHICVEMDLQLKNIEYIVFDEADRLFEMGFGEQIQEIVNRLPESRQTLL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L   ++  L +P  + ++  S   E +   F+    +  +K A+L  LL+  
Sbjct: 217 FSATLPKILVDFTKAGLSDPVLLRLDVESKLPEGLTLSFITCRPE--EKLAVLLSLLKRI 274

Query: 243 DTMKNGIIFCNQKKNVVNLCHS-LEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               + II   +  + V   H  L+K   S   I+ N+D  +R    + F+ G +++++ 
Sbjct: 275 IKPDSQIIIFAETMHHVEYIHQILDKADISNTFIYSNLDPSARKINAAKFQIGKVRVLIV 334

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +D+AARG+DIP +  V NF+ P +++ ++HR+GR  RAGR G A+ +V+ ++  ++
Sbjct: 335 TDVAARGIDIPHLDCVINFNFPAKSKLFVHRVGRCARAGRVGTAYNIVSSDEYPYL 390


>gi|66911756|gb|AAH97636.1| Ddx10 protein [Xenopus laevis]
          Length = 717

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 135/372 (36%), Positives = 206/372 (55%), Gaps = 12/372 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  +++A Y  PT IQ +TI L LQ  DV G A+TG+GKT +F++P L  
Sbjct: 76  FSDFPLSKKTLRGLVEAQYRLPTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFIIPALEC 135

Query: 63  LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         LI+ PTRELA Q  +   K G+N+  +  L+IGG   + +   + R
Sbjct: 136 LYRQQWTSDDGLGVLIISPTRELAYQTFEVLRKVGRNHEFSAGLVIGGKDLKQETACIHR 195

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++LICTPGR+L H +       +N+ +LV+DEADR+LDMGF   +  I   +P  RQT
Sbjct: 196 -TNILICTPGRLLQHMDETSFFHASNLHMLVLDEADRILDMGFADTMNAIIENLPKKRQT 254

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT T  ++ ++   L++P  + V+  +  ST  T+E  ++    Q  +K  LL   
Sbjct: 255 LLFSATQTKSVKDLARLSLKDPAYVWVHEKAKFSTPATLEQNYIVCELQ--QKINLLYSF 312

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSL--EKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +++    K  I+F +  K V  L  +    + G  V  +HG   Q  RM++ ++F     
Sbjct: 313 IRNH-LKKKSIVFFSSCKEVQYLFRAFCRLRPGIPVLVLHGKQQQTKRMEVYNDFIRKKS 371

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++ A+D+AARGLD P V  V   D P  A  YIHR+GRT R    G+A  ++   ++K 
Sbjct: 372 AVLFATDIAARGLDFPAVSWVLQLDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEVKG 431

Query: 357 IDAIEKLIEKKV 368
           +   ++L EKKV
Sbjct: 432 M--AKQLEEKKV 441


>gi|189188996|ref|XP_001930837.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187972443|gb|EDU39942.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 1165

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 196/357 (54%), Gaps = 10/357 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A +GL    +       Y KPT IQ + IP+     D+ G+A+TG+GKT +F +PM+  
Sbjct: 525 WAQMGLLQATMDVFTQVRYEKPTAIQSQAIPIAESGRDLIGVAKTGSGKTLAFGIPMIRH 584

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL++   +    P  LIL PTREL+ Q+    + +     +T+    GG P   Q   L+
Sbjct: 585 ILDQRPLKPSDGPIGLILAPTRELSLQIVHELKPFLAASGITIKCAYGGQPISEQIAMLK 644

Query: 121 RGADVLIC-TPGRILD--HFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           RG   ++C T GR++D    N G++L    I  +V+DEADRM DMGF P +  I + V  
Sbjct: 645 RGGIHILCATAGRLIDLISCNSGRVLSFKRITYVVLDEADRMFDMGFEPQVMKILANVRP 704

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC--AL 234
            RQT+LFSATM   +  +++  L++P  I +   S  A  I          Y KK    L
Sbjct: 705 DRQTILFSATMPKNMHALAKKALKDPVEIIIGGKSKVAAEITQIISVVPPSYDKKINNTL 764

Query: 235 LQ-QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK-QGFSVCAIHGNIDQRSRMKILSNFK 292
           L    L  +D     +IF  +++   +L   L K + FSV  IHG  DQ  R + +S+FK
Sbjct: 765 LHLGRLFDEDENAQVLIFTERQETAEDLLSKLYKAKYFSVNTIHGAKDQTDRNEAISDFK 824

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +G + +++A+ +AARGLD+P +  VFNFD P   E+Y+HR GRTGRAG  G A TL+
Sbjct: 825 QGVLSILIATSVAARGLDVPGLAMVFNFDCPTHLEDYVHRCGRTGRAGNKGTAITLI 881


>gi|332704265|ref|ZP_08424353.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554414|gb|EGJ51458.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 529

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 123/357 (34%), Positives = 199/357 (55%), Gaps = 16/357 (4%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P +  A+  AG+    P+Q K++P+++  HD+   ++TG+GKT +FVLP   ILE+  
Sbjct: 49  LPPLLREALSRAGWTSLMPVQAKSMPIIMGGHDLMVQSRTGSGKTGAFVLP---ILERID 105

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
             +   + L+L PTRELA QVA   E    +    VA+  GG+ F  Q +  + GA +++
Sbjct: 106 PNLAATQALVLVPTRELARQVAHEAEVLVGDRARVVAVY-GGVSFGKQVEGFKAGAHIVV 164

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR-QTLLFSAT 186
            TPGRILDH  R    +  +  L+ DEADRML +GF P ++ +   +P  R  T +FSAT
Sbjct: 165 GTPGRILDHLLRHNFNLQELRALIFDEADRMLSIGFYPDMKQVQRYMPKRRVNTFMFSAT 224

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
               + +++  F+  P+ + +++       ++H          ++C  L ++++ ++   
Sbjct: 225 YPAFVMRLAGEFMHKPQMLSLSSKQVHVAEVQHVIYEVPRMGRERC--LMRIIEVENP-T 281

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           +  IFCN K  V  +   L   G+    + G++ Q  R  IL   + G+++L+V++D+AA
Sbjct: 282 SAFIFCNTKAQVEYVSTVLANFGYDADGLTGDLSQSKRESILDRVRAGSLRLLVSTDVAA 341

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           RG+DIPD+ HV  ++ P   E+YIHR GRTGRAG  G+  TLV        D I+KL
Sbjct: 342 RGIDIPDLSHVIMYEPPEDPESYIHRAGRTGRAGASGEVITLV--------DVIQKL 390


>gi|228993029|ref|ZP_04152952.1| ATP-dependent RNA helicase yqfR [Bacillus pseudomycoides DSM 12442]
 gi|228999079|ref|ZP_04158661.1| ATP-dependent RNA helicase yqfR [Bacillus mycoides Rock3-17]
 gi|228760696|gb|EEM09660.1| ATP-dependent RNA helicase yqfR [Bacillus mycoides Rock3-17]
 gi|228766677|gb|EEM15317.1| ATP-dependent RNA helicase yqfR [Bacillus pseudomycoides DSM 12442]
          Length = 436

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 133/380 (35%), Positives = 212/380 (55%), Gaps = 16/380 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L  
Sbjct: 6   FTQYNFQPFLIDAVRELRFSEPTEIQKKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           ++  R  V++   +I  PTRELA Q+     K  K    +  +T   LIGG   +   +K
Sbjct: 66  IDAKREEVQL---VITAPTRELAQQIYQEIVKLTKFCEEDQMITARCLIGGTDKQRSIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   V+I TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LKKQPHVVIGTPGRIKDLVEEKALFVHKATTIIVDEADLMLDMGFIQDVDKIAARMPKNL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ- 237
           Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +  ++  K  L++  
Sbjct: 183 QMLVFSATIPQKLKPFMKKYMENPEHIHINPKQVAAGNIEHYLVPS--RHRNKIELVKNM 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ +  +   I+F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 241 LLQFKPYL--AIVFTNTKKKADEVADGLAERGLKVGRIHGDLSPRDRKKMMKQVRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGYSGIAVTIYDPANEEAL 358

Query: 358 DAIEK---LIEKKVDWLNGD 374
           D++EK   +I   VD L GD
Sbjct: 359 DSLEKQRNIIFNHVD-LRGD 377


>gi|164683438|gb|ABY66383.1| eukaryotic initiation factor 4A [Plutella xylostella]
          Length = 422

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 136/378 (35%), Positives = 209/378 (55%), Gaps = 9/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L  +++  +   G+ KP+ IQ + I   +Q  DV   AQ+GTGKTA+F    ++I
Sbjct: 51  FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---SISI 107

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++    +R  + LIL PTRELA Q+       G + N      IGG       ++LE G
Sbjct: 108 LQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDMRQLESG 167

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  N I++ V+DEAD ML  GF   I ++  ++    Q +L
Sbjct: 168 VHVVVGTPGRVYDMITRRALRANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 227

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM D++ +VS  F++ P RI V     T E I+  F++   +  K    L+ L    
Sbjct: 228 LSATMPDDVLEVSRCFMREPIRILVQKEELTLEGIKQFFISIEQEEWK----LETLCDLY 283

Query: 243 DTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           DT+     +IFCN ++ V  L  S+ ++ F+V A+HG++DQR R  I+  F+ G+ ++++
Sbjct: 284 DTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLI 343

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V + D + +  I
Sbjct: 344 TTDLLARGIDVQQVSCVINYDLPTNRENYIHRIGRGGRFGRKGIAINFVTEADRRALKDI 403

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      +  +  D+++L
Sbjct: 404 EDFYHTSIIEMPSDVANL 421


>gi|16716475|ref|NP_444413.1| ATP-dependent RNA helicase DDX50 [Mus musculus]
 gi|55976576|sp|Q99MJ9|DDX50_MOUSE RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD
           box protein 50; AltName: Full=Gu-beta; AltName:
           Full=Nucleolar protein Gu2
 gi|13540306|gb|AAK29403.1|AF334104_1 nucleolar protein GU2 [Mus musculus]
          Length = 734

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 206/353 (58%), Gaps = 17/353 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ+KT   V +  D+   A+TGTGKT SF +P++  
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195

Query: 63  LEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ +  +   R P+ L+L PTRELA QVA +F+   +   L+VA   GG  +++Q  ++
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINQI 253

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   G+L ++ +  +V+DE D+MLD+GF   +++I      T  
Sbjct: 254 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 313

Query: 179 ----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
               QTLLFSAT    + KV++ ++++  +++++        A T+EH  +A    +S++
Sbjct: 314 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEH--LAIQCHWSQR 371

Query: 232 CALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A++  +LQ    +    IIFC  KKNV  +  +   +  + C +HG+I Q  R   L  
Sbjct: 372 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKG 430

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           F+EG+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 431 FREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 483


>gi|329940598|ref|ZP_08289879.1| DEAD-box RNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329300659|gb|EGG44556.1| DEAD-box RNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 497

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 125/347 (36%), Positives = 187/347 (53%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +  +++  +   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 71  FADLDMPEQLLAELGRQGVTAPFPIQGATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 130

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  LIL PTRELA QV D    Y ++  L +A ++GG+P   Q   L  G
Sbjct: 131 TAGQRAEPRQPLGLILVPTRELAQQVTDALTPYARSVRLRLATVVGGMPIGRQAGALRGG 190

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+VL+ TPGR+ D  +RG+  +N+++I V+DEAD+M  MGF+P +  +   V    Q +L
Sbjct: 191 AEVLVATPGRLKDLIDRGECRLNHVDITVLDEADQMAGMGFMPQVTALLDQVRPEGQRML 250

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  +    T+EH  +  +   + K A   Q+    
Sbjct: 251 FSATLDRNVDLLVRRYLTDPVVHSVDPSAGAVTTMEHHVL--HVHGADKHAATTQIAARD 308

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F + K  V  L   L   G    A+HG   Q  R + L+ FK G + ++VA+
Sbjct: 309 GRV---IMFLDTKHAVDRLTQDLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVAT 365

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 366 NVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLV 412


>gi|62089354|dbj|BAD93121.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 variant [Homo sapiens]
          Length = 845

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 210/376 (55%), Gaps = 21/376 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P+L  
Sbjct: 81  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 140

Query: 63  LEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     R++   T     LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +
Sbjct: 141 L----YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE 196

Query: 118 KLERGADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++    ++L+CTPGR+L H +        ++++LV+DEADR+LDMGF   +  +   +P 
Sbjct: 197 RIN-NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK 255

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCAL 234
            RQTLLFSAT T  ++ ++   L+NP+ + V+  +  ST  T+E  ++    Q  +K ++
Sbjct: 256 KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQ--QKISV 313

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL--EKQGFSVCAIHGNIDQRSRMKILSNFK 292
           L   L+S    K  I+F +  K V  L       + G S+ A+HG   Q  RM++ + F 
Sbjct: 314 LYSFLRSH-LKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFV 372

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                ++ A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   
Sbjct: 373 RKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPS 432

Query: 353 DIKHIDAIEKLIEKKV 368
           +      +++L++KKV
Sbjct: 433 EKA---MVQQLLQKKV 445


>gi|323455397|gb|EGB11265.1| hypothetical protein AURANDRAFT_1175 [Aureococcus anophagefferens]
          Length = 433

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 192/349 (55%), Gaps = 27/349 (7%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTG----KTASFVLPMLTILEKGRAR-----VR 71
           Y  PTPIQ  TIPL L  HDV   AQTG+G    KT +F+LP +T     R         
Sbjct: 53  YDTPTPIQKHTIPLALAGHDVIATAQTGSGQRSGKTVAFLLPCVTSAAAARKASRGGGAA 112

Query: 72  MPRTLILEPTRELAAQVAD-----NFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
            P TL+L PTRELA Q+AD      F+    + N  V    GG     Q  +L RG ++L
Sbjct: 113 APSTLVLAPTRELATQIADEAVKLTFDAPKSSKNWCVCCY-GGANARGQLARLARGVEIL 171

Query: 127 ICTPGRILDHF----NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--Q 179
           + TPGR++D      +RG L+ + ++   V+DEADRMLDMGF P ++ I + +P  R  Q
Sbjct: 172 VATPGRLVDFLERSSDRGPLVSLESVRFAVLDEADRMLDMGFEPQLRKIVAKLPAARERQ 231

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTP--SSTAETIEHCFVATYAQYSKKCALLQQ 237
           TL+FSAT +  +Q+V+  +L   +  EV      S+  +IE   V  ++  S K + L+ 
Sbjct: 232 TLMFSATFSPAVQQVARAYLDGARVAEVTVGRVGSSVASIEQRLV--FSPASDKRSKLEL 289

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL      +  I+F  +K     +   L K  F    IHG+  Q  R   L +FK+G   
Sbjct: 290 LLPVLAPGEKTIVFVQKKHVATWVKRELAKAKFRAEDIHGDRSQSQREAALESFKQGRCD 349

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVP-NRAENYIHRIGRTGRAGRHGKA 345
           ++VA+D+AARGLD+ DV HV  FD+P +  + Y+HRIGRTGRAG+ G A
Sbjct: 350 VLVATDVAARGLDVNDVAHVVQFDLPQDDFDTYVHRIGRTGRAGKTGVA 398


>gi|323493979|ref|ZP_08099095.1| DNA and RNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323311606|gb|EGA64754.1| DNA and RNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 412

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 212/369 (57%), Gaps = 11/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS +++ + L    +KPT IQ   IP +L   DV  +A TG+GKT ++ LP++
Sbjct: 1   MPFSSLSLSVELINS-LPEDIIKPTDIQTLVIPQMLADKDVLALANTGSGKTLAYTLPLV 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK +A     + ++L PTRELA QV+    +      L+   L GG+    Q + LE
Sbjct: 60  ---EKLKANSEQ-QAVVLVPTRELAMQVSQVINQLASPLGLSAVCLCGGVDKAEQQQALE 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ T GR++D  N G L ++ +  LV+DEADR+LDMGF P +Q I       RQT
Sbjct: 116 QQPQILVATTGRLIDLINDG-LSLSKVAYLVLDEADRLLDMGFWPDVQTIAENTAQKRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLL 239
            +FSAT +++L++ +   +++   +  +  +ST + I E  ++      SK  AL++ + 
Sbjct: 175 AMFSATFSEQLKQQAGTLMRSAIELSAHQNNSTNKDIAERLYLVNKG--SKTKALIELIK 232

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q Q   K  ++F   K+N   L   L K G +  A+HGN DQ  R +IL+ FK G  Q++
Sbjct: 233 QHQ--WKQVLVFIGAKENADGLNKKLNKAGIASQALHGNKDQTEREQILAQFKSGQSQVL 290

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG  G A +LV   + + ++A
Sbjct: 291 IATDLLARGVHIEQLPAVINFELPMHAETYVHRVGRTARAGEQGIALSLVCHGETEALNA 350

Query: 360 IEKLIEKKV 368
           I  L ++++
Sbjct: 351 IRVLTQREL 359


>gi|226305824|ref|YP_002765784.1| ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
 gi|226184941|dbj|BAH33045.1| putative ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
          Length = 479

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 128/359 (35%), Positives = 191/359 (53%), Gaps = 8/359 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+   +V A+ D G   P PIQI T+P  L   DV G  +TG+GKT +F +PM++ 
Sbjct: 11  FAALGVRAPLVKALEDGGITSPFPIQIDTLPDTLSGRDVLGRGKTGSGKTLAFSIPMVSR 70

Query: 63  L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L      G+ R   P  L+L PTRELA Q+    E     Y+L V  + GG+    Q + 
Sbjct: 71  LAGELSGGKRRPGRPLGLVLAPTRELATQITATLEPLAAAYDLRVTTIFGGVSQHRQVQA 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+++  PGR+ D   +  + ++ +EI V+DEAD M D+GF+P +  I S  P   
Sbjct: 131 LKAGVDIVVACPGRLEDLMKQKFVSLDAVEITVLDEADHMADLGFLPVVTRILSSTPQDG 190

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT+ + + K+ + FL+N     V+  +S    + H         +KK AL+++L
Sbjct: 191 QRLLFSATLDNGVDKLVKRFLKNEVMHSVDEANSPVAAMTHHVFDVDGVEAKK-ALVEKL 249

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     I+F   K     L   L + G     +HGN+ Q +R + L+ F  G  ++
Sbjct: 250 ASGTGRR---ILFMRTKHQARKLARQLTESGIPSVDLHGNLSQAARDRNLAAFSAGEARV 306

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +VA+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   T+V  E  K +
Sbjct: 307 LVATDVAARGVHVDDVELVVHVDPPAEHKAYLHRSGRTARAGSAGDVVTVVLPEQRKDL 365


>gi|257067967|ref|YP_003154222.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
 gi|256558785|gb|ACU84632.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
          Length = 498

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 130/349 (37%), Positives = 189/349 (54%), Gaps = 7/349 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA LG+   +  A+   G  +PTPIQ  T+P  L   DV G  +TG+GKT +F+LP++ 
Sbjct: 5   DFARLGVPSVLTGALAPLGITEPTPIQAATLPDSLSGRDVLGRGRTGSGKTYAFLLPLVA 64

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L  +  +   R PR+L+L PTRELA+Q+A++ +       L  A++ GG+    Q   L
Sbjct: 65  RLLEQPRKRAARRPRSLVLAPTRELASQLAESLKPLEAAAGLRSAVVFGGVGQNPQVNAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DVLI  PGR+LD   +G   ++ IEI VIDEAD M DMGF+P ++ I    P   Q
Sbjct: 125 ARGIDVLIACPGRLLDLMGQGHADLSAIEITVIDEADHMADMGFLPMVRRILEATPSRGQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT+   + K+ + FL  P     +  +S   T+EH  +   A  + +  +L+ L 
Sbjct: 185 RMLFSATLDSGVNKLVKQFLHEPVTHSADPATSPVGTMEHHVLEVDA--AARFDVLRDLA 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       I+F   K    NL   L  +G     +HGN+ Q +R + L  F  GT   M
Sbjct: 243 AAPGRT---IMFTRTKYGAKNLARKLAARGVDAVDLHGNLSQNARTRNLEAFGSGTATTM 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           V +D+AARG+ + +V  V + D P   + Y+HR GRT RAG  G   T+
Sbjct: 300 VCTDIAARGIHVDEVAIVVHADPPVEHKAYLHRSGRTARAGESGTVITV 348


>gi|229086855|ref|ZP_04219016.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-44]
 gi|228696459|gb|EEL49283.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-44]
          Length = 436

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 132/384 (34%), Positives = 211/384 (54%), Gaps = 15/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ AV D  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L  
Sbjct: 6   FTQYDFQPFLIDAVRDLRFSEPTEIQKKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           +   R  V++   +I  PTRELA Q+     K  K       +T   LIGG   +   +K
Sbjct: 66  INANREEVQL---VITAPTRELAQQIYQEIVKLTKFCAEEQMITARCLIGGTDKQRSIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   V++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LKKQPHVVVGTPGRIKDLVEEQALFVHKATTIIVDEADLMLDMGFIQDVDKIAARMPKNL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ- 237
           Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +  ++  K  L++  
Sbjct: 183 QMLVFSATIPQKLKPFMKKYMENPEHIHINPKQVAAGNIEHYLVPS--RHRNKIELVKNM 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ +  +   I+F N KK    + + L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 241 LLQFKPYL--AIVFTNTKKMADEVANGLTERGLKVGRIHGDLSPRDRKKMMKQVRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + I
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGYSGIAVTIYDPANEEAI 358

Query: 358 DAIEK---LIEKKVDWLNGDLSSL 378
           D++EK   +  K VD    + + L
Sbjct: 359 DSLEKQRNITFKHVDLRGNEWADL 382


>gi|254442828|ref|ZP_05056304.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198257136|gb|EDY81444.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 406

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 120/362 (33%), Positives = 205/362 (56%), Gaps = 9/362 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61
           F +LG+   ++  + + G ++PT IQ   IPL+L+   D  G AQTGTGKTA+F LP+L 
Sbjct: 39  FKELGVVADLIRGIEEKGILEPTEIQELAIPLLLKNEGDFVGQAQTGTGKTAAFGLPLLQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120
            ++  + RV+    L+L PTRELA Q+A     Y K    +    + GG   E Q   L 
Sbjct: 99  RIDPTQKRVQ---ALVLSPTRELAKQIAKQLFHYTKYTAKIFTEAVAGGEKIEGQIAALS 155

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   +++ TPGR++D      + ++ I+ LV+DEAD ML MGF   +  I       ++T
Sbjct: 156 RTTHIVVATPGRLIDLLKVKAVDLSTIDTLVLDEADEMLSMGFQDELNKILEFTRGAKRT 215

Query: 181 LLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LFSATM   + ++ E +L  + K + V+  +   + IEH +  T     +K   + + +
Sbjct: 216 WLFSATMPKGVTRMIERYLSPDAKHVTVDRKNPVNKNIEHWY--TVCTIEEKPDEIARFI 273

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++Q   + G++FC  K  V N+ + L ++GF V  + G++ Q+ R K++  F++   +++
Sbjct: 274 KAQKG-RRGVVFCRSKAGVQNIANELTERGFEVATLQGDLSQKDRDKVMRGFRKERSEVL 332

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++D++ARG+D+  + +V +  +P++ E Y HR GRT RAGR G +   + + D+K I  
Sbjct: 333 VSTDVSARGIDVEGLAYVVHHQLPDQIEYYTHRSGRTARAGRKGISMAFITRGDVKRIRE 392

Query: 360 IE 361
           ++
Sbjct: 393 LQ 394


>gi|224756704|gb|ACN62375.1| ATP dependent RNA helicase Hel61p [Leishmania tarentolae]
          Length = 545

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 129/345 (37%), Positives = 188/345 (54%), Gaps = 15/345 (4%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           Y   T IQ  TIPL+ + HD  G+A TG+GKT +F +P L   +        P  L+L P
Sbjct: 113 YPSTTDIQKFTIPLLAEGHDAIGLAPTGSGKTVAFAVPALAGFKPNPDGT--PSVLVLAP 170

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TREL  Q    F+  G    + V    GG P + Q ++L  G DVL+  PGR+ D  + G
Sbjct: 171 TRELVQQTTKVFQNLGCG-QVRVCEAYGGAPRDLQARRLRNGCDVLVACPGRLKDFLDGG 229

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--QTLLFSATMTDELQKVSENF 198
           ++ + N+  LV DEADR+LDMGF  ++  I + +      QT+++SAT  + +Q++   +
Sbjct: 230 EVSLRNLSFLVFDEADRLLDMGFQVHLDEIMAYLDSASHPQTMMWSATWPESVQEMVRKY 289

Query: 199 LQNPK-RIEVNTPSSTAETIEHC-----FVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           L + +  I   T  +  +  EH      F  T+ +  +K  LL +     D     IIF 
Sbjct: 290 LSDDRVLIRAGTAGAGLQVNEHIKQELIFCRTFTERIEKLGLLVEDGTIDDNSDKLIIFV 349

Query: 253 NQKKNVVN----LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
            ++ +  N      H L      V AIHG + QR R +++S FK   I+L+VA+D+A+RG
Sbjct: 350 ERQADTENTARAFSHRLGIDTRYVGAIHGGLSQRQRDRVMSMFKNNQIRLLVATDVASRG 409

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           LDIPDV  V NF  P   ++Y HRIGRTGRAGR G A+T +++ED
Sbjct: 410 LDIPDVTCVVNFQAPKTIDSYCHRIGRTGRAGRTGTAYTFLSEED 454


>gi|229198412|ref|ZP_04325118.1| ATP-dependent RNA helicase yqfR [Bacillus cereus m1293]
 gi|228585112|gb|EEK43224.1| ATP-dependent RNA helicase yqfR [Bacillus cereus m1293]
          Length = 439

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 215/378 (56%), Gaps = 14/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L  
Sbjct: 9   FTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           +  GR  V++   +I  PTRELA Q+ +   K  K    +  +T   LIGG   +   +K
Sbjct: 69  INPGREEVQL---VITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEK 125

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   
Sbjct: 126 LKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNL 185

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ- 237
           Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +  ++  K  L+++ 
Sbjct: 186 QMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPS--KHRNKIDLVKRM 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ +  +   ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 244 LLQFKPYL--AVVFTNTKKMADQVADGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 302 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGYSGIAVTIYDPANEEAL 361

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 362 DSLEK--QRHIEFKHVDL 377


>gi|297197315|ref|ZP_06914712.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
 gi|197714892|gb|EDY58926.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 469

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 186/347 (53%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   V+  + + G  +P PIQ  T+P  L   DV G  +TG+GKT +F LP+L  
Sbjct: 28  FADLALPAPVLRTLGEHGVREPFPIQAATLPDALAGRDVLGRGRTGSGKTLAFGLPLLVR 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  + P  LIL PTRELA QV++    Y +   L +A ++GG+    Q   L  G
Sbjct: 88  TAGQRAEAKQPLALILVPTRELAQQVSEALAPYAEALGLRMAAVVGGMSIGRQIAALRDG 147

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D   R    +  + I V+DEAD+M D+GF+P +  +   V    Q +L
Sbjct: 148 AEVVVATPGRLHDLVERKACRLGRVRITVLDEADQMCDLGFLPQVTEVLDQVRPEGQRML 207

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  ++ ++   +L +P    V+  +    T++H  +  +     + A+  ++    
Sbjct: 208 FSATLDRDVDQLVSRYLHDPVVHSVDPSAGAVTTMDHHVLVVHG--PDRYAVTTEIAARD 265

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   ++F + K  V  L   L   G    A+H    Q  R + L+ FK G + ++VA+
Sbjct: 266 GRV---LLFLDTKHGVDQLTRHLRGSGVHAAALHSGKSQPQRTRTLAQFKNGQVTVLVAT 322

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARGL + D+  V N D P  A++Y+HR GRT RAG  G+  TLV
Sbjct: 323 NVAARGLHVDDLDLVVNVDPPTDAKDYLHRAGRTARAGESGRVVTLV 369


>gi|114640235|ref|XP_001141618.1| PREDICTED: probable ATP-dependent RNA helicase DDX10 [Pan
           troglodytes]
          Length = 875

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 134/376 (35%), Positives = 210/376 (55%), Gaps = 21/376 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P+L  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 63  LEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     R++   T     LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +
Sbjct: 131 L----YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE 186

Query: 118 KLERGADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++    ++L+CTPGR+L H +        ++++LV+DEADR+LDMGF   +  +   +P 
Sbjct: 187 RIN-NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK 245

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCAL 234
            RQTLLFSAT T  ++ ++   L+NP+ + V+  +  ST  T+E  ++    +  +K ++
Sbjct: 246 KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIV--CELKQKISV 303

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL--EKQGFSVCAIHGNIDQRSRMKILSNFK 292
           L   L+S    K  I+F +  K V  L       + G S+ A+HG   Q  RM++ + F 
Sbjct: 304 LYSFLRSH-LKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFV 362

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                ++ A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   
Sbjct: 363 RKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPS 422

Query: 353 DIKHIDAIEKLIEKKV 368
           +      +++L++KKV
Sbjct: 423 EKA---MVQQLLQKKV 435


>gi|320590875|gb|EFX03318.1| ATP-dependent RNA helicase dbp3 [Grosmannia clavigera kw1407]
          Length = 541

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 135/413 (32%), Positives = 207/413 (50%), Gaps = 38/413 (9%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK------------- 65
           A Y KPTPIQ  + P  L   DV GIA+TG+GKT +F LP +  + +             
Sbjct: 135 AEYKKPTPIQSASWPFTLSGRDVVGIAETGSGKTMAFALPCVEAVLRAARPEAMEAKKLP 194

Query: 66  ----------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                     G+  V   R +++ PTRELA Q             LT   L GG   + Q
Sbjct: 195 NRSKLNNKWDGKGNVAQARAVVVSPTRELAMQTHAALAPLAARVGLTAVCLYGGASKDEQ 254

Query: 116 NKKLER--GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
             +L +  G DV++ TPGR+ D      + + ++   V+DEADRMLD GF   I+ I   
Sbjct: 255 RVQLRQAGGVDVIVATPGRLKDFLADEAVSLAHVCFAVLDEADRMLDTGFEEDIRQILGQ 314

Query: 174 VP--FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            P    RQTL+F+AT    ++ +++ F+ +P +I      +T E ++      +A+  + 
Sbjct: 315 CPDRTQRQTLMFTATWPTSVRGLAQGFMVDPVKI------TTVEVMDQ-----HAKERRV 363

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
            A+++Q  +        ++FC  KK  V + + L+ QG  VC+IHG++ Q  R + L  F
Sbjct: 364 LAIIKQEQRGAARNDRILVFCLYKKEAVRVENFLQGQGVRVCSIHGDLRQEQRTRSLEAF 423

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   ++VA+D+AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG+ G+A T   +
Sbjct: 424 KTGQTPVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKDGRAITFFTE 483

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
            D  H  ++  ++      +  DL      ++K     +    K+  + QK T
Sbjct: 484 HDKAHSGSLVNILRGANQEVPDDLLKFGTTVKKKAHGTYGAFFKDVDMSQKGT 536


>gi|163854396|ref|YP_001628694.1| putative ATP-dependent RNA helicase [Bordetella petrii DSM 12804]
 gi|163258124|emb|CAP40423.1| putative ATP-dependent RNA helicase [Bordetella petrii]
          Length = 321

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 121/298 (40%), Positives = 177/298 (59%), Gaps = 6/298 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL+  ++ A+ + GY  PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 5   VSFADLGLADPLLRAIAETGYTAPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFTLPIL 64

Query: 61  TILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L + +  ++    PR LIL PTREL AQVA++   YGK+  LT  ++ GG+    Q  
Sbjct: 65  HLLMQQKPALKKPGRPRCLILTPTRELTAQVAESVRTYGKHTPLTSMVMFGGVNINPQIS 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++  D+L+ TPGR+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ + +L+P  
Sbjct: 125 ALKKPLDILVATPGRLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L NP  + V TP +TA  +    V    Q+ K+  L+  
Sbjct: 185 RQNLLFSATFSDEIRSLARGVLNNPGEVSV-TPRNTATELVTQTVHLVEQHHKR-DLISH 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +++ +      ++F   K     L   L K G S  AIHGN  Q +R +     +  T
Sbjct: 243 IIR-ESGWHQVLVFTRTKHGANRLAEKLVKDGLSAAAIHGNKSQAARTRACRASRTAT 299


>gi|315055381|ref|XP_003177065.1| ATP-dependent RNA helicase DBP8 [Arthroderma gypseum CBS 118893]
 gi|311338911|gb|EFQ98113.1| ATP-dependent RNA helicase DBP8 [Arthroderma gypseum CBS 118893]
          Length = 528

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 140/382 (36%), Positives = 211/382 (55%), Gaps = 17/382 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL+P +V ++      +PT IQ   IP +++  D  G ++TG+GKT +F  P   I
Sbjct: 101 FASLGLAPWLVSSLKAMEIKRPTAIQKSCIPEIIKGRDCIGGSRTGSGKTVAFAAP---I 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  A       +IL PTRELA Q+ +  +      +L   L+ GG     Q   L + 
Sbjct: 158 LHKWSADPFGIYAVILTPTRELALQIFEQVKAISAPQSLKPLLITGGSDMRPQAIGLSQR 217

Query: 123 ADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSLVP 175
             ++I TPGR+ DH         + +  + ++V+DEADR+L  G    +P ++   S +P
Sbjct: 218 PHIVIATPGRLADHIKSSGEDTIIGLKRVRMVVLDEADRLLTSGPGSMLPDVETCLSALP 277

Query: 176 FT--RQTLLFSATMTDELQKV-SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY--SK 230
            +  RQTLLF+AT+T E++ + S    +N   I V   S+   TI      TY Q   + 
Sbjct: 278 ASTDRQTLLFTATVTPEVRALKSMPRAKNRPPIFVTEISTENTTIPPTLKQTYLQVPLNH 337

Query: 231 KCALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A L  LL ++ ++ K+ IIFCN+ K    L   L +    V ++H  + Q  R+  LS
Sbjct: 338 REAFLHVLLSTEGNSSKSTIIFCNRTKTADLLERILRRLSHRVTSLHSLLPQSERIANLS 397

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+    +L+VA+D+AARGLDIP VG V N+DVP   ++YIHR+GRT RAGR G+A TLV
Sbjct: 398 RFRASAARLLVATDVAARGLDIPSVGLVINYDVPRNPDDYIHRVGRTARAGREGEAITLV 457

Query: 350 AKEDIKHIDAIEKLIEKK-VDW 370
            + D++ + AIE  + K+ + W
Sbjct: 458 GQRDVQLVMAIEARVGKQMLAW 479


>gi|119605383|gb|EAW84977.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41, isoform CRA_a [Homo
           sapiens]
 gi|119605386|gb|EAW84980.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41, isoform CRA_a [Homo
           sapiens]
 gi|193787208|dbj|BAG52414.1| unnamed protein product [Homo sapiens]
          Length = 496

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 197/361 (54%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 57  FKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 116

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 117 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMS 176

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 177 VKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 236

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + +N   + A +++   V    +Y K+
Sbjct: 237 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKE 291

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 292 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 351

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 352 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 411

Query: 351 K 351
           K
Sbjct: 412 K 412


>gi|308178316|ref|YP_003917722.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
 gi|307745779|emb|CBT76751.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
           Re117]
          Length = 515

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 131/378 (34%), Positives = 202/378 (53%), Gaps = 9/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LG+   +   + D+G     PIQ  T+P  L   DV G  QTG+GKT +F LP++  
Sbjct: 5   FSALGVPEYLAKVLADSGIESAFPIQEATLPSTLAGGDVLGRGQTGSGKTLAFSLPLVAR 64

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L     R + R PR LI+ PTRELA Q+A   E   K   L   ++ GG+    Q K + 
Sbjct: 65  LADRPQRRKARFPRALIMAPTRELATQIAKTVEPLAKAAGLRTTVIYGGVAQSRQEKAMN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD++I  PGR+ D   +  + ++ +EI V+DEAD M DMGF+P ++ I   +P   Q 
Sbjct: 125 EGADIVIACPGRLDDLIKQKIVDLSQLEISVLDEADHMADMGFLPVVRRIMDRMPTGIQH 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALLQQLL 239
           +LFSAT+ + + KV++ +L +P    V+ P +   T+E H FV +      K  L++ L 
Sbjct: 185 MLFSATLDNGVDKVAKRYLSHPTIHSVDAPKAAVNTMEHHVFVIS---NDDKKDLIRVL- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q T +  I+F   K +   +  +L K G     +HGN+ Q +R + L+ F  G  +++
Sbjct: 241 -AQGTARR-IMFMRTKHHAKKMALTLSKAGVPAVDLHGNLSQNARDRNLAAFASGEAKVL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+ +  V  V + D P   + Y HR GRT RAG  G   T+   +    +  
Sbjct: 299 VATDVAARGVHVDGVELVVHVDPPAEHKAYTHRSGRTARAGSDGTVVTICTPDQQGDVST 358

Query: 360 IEKLIEKKVDWLNGDLSS 377
           + K    KV +   +L+S
Sbjct: 359 LLKQAGLKVPFEKVNLNS 376


>gi|224081379|ref|XP_002306390.1| predicted protein [Populus trichocarpa]
 gi|222855839|gb|EEE93386.1| predicted protein [Populus trichocarpa]
          Length = 402

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 201/377 (53%), Gaps = 15/377 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++GL   ++  + + G+ KP+ IQ + +  +++  DV   AQ+GTGKT+   L +  +
Sbjct: 21  FDEMGLKEDLLRGIYNYGFEKPSAIQQRALMPIIKGRDVIAQAQSGTGKTSMIALTVCQL 80

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     V+    LIL PTRELA Q        G+N N+ V   IGG       +KLE G
Sbjct: 81  VDTASREVQ---ALILSPTRELAEQTQRVITVIGENINIQVHACIGGKSVGEDIRKLEHG 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I +LV+DE+D ML  GF   I ++   +P   Q +L
Sbjct: 138 VHVVSGTPGRVCDMIKRRSLRTRAIRVLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+ +E+ +++  F+ +P +I V     T E I+  FVA   +  K   L    L   
Sbjct: 198 ISATLPNEILEITSKFMTDPVKILVKRDELTLEGIKQFFVAVEKEEWKFETLTD--LYDT 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+SNF+ G  ++++ +
Sbjct: 256 LTITQAVIFCNTKRKVDWLTAKMVEFNFTVSSMHGDMPQKERDAIMSNFRSGETRVLITT 315

Query: 303 DLAARGLDIPDV----------GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           D+ ARGLD+               V N+D+PN  E YIHRIGR+GR GR G A   V  +
Sbjct: 316 DVWARGLDVQQASSLSSSSSIVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSD 375

Query: 353 DIKHIDAIEKLIEKKVD 369
           DI+ +  IE+    ++D
Sbjct: 376 DIRILRDIEQYYSTQID 392


>gi|170760702|ref|YP_001787100.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169407691|gb|ACA56102.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 421

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 113/362 (31%), Positives = 208/362 (57%), Gaps = 8/362 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L+PK+V  +       PT IQ + IPL ++  D+ G ++TGTGKT +++LP   I
Sbjct: 5   FDTLNLNPKLVQGLKKLNINIPTEIQAEAIPLAMENKDIIGQSETGTGKTLAYLLP---I 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA--LLIGGIPFEAQNKKLE 120
            EK     R  + +IL PT ELA Q+ +  +    N N+ V    +IG    + Q +KL+
Sbjct: 62  FEKITTEKREMQAIILAPTHELAMQINNEIKNISSNSNIDVKSMAIIGEANIKRQIEKLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ +PGRIL+   + K+  + ++ +VIDE D++LD   +  ++ +       RQ 
Sbjct: 122 EKPHIIVGSPGRILELIKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQL 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+T+    ++++ +++ + ++V   ++  E I+H ++    ++ ++  +L++L+ 
Sbjct: 182 MLFSATITESTLNIAKDLMKDSEVVKVKEKNTVNENIKHLYIT--GEHRERIEILRKLIA 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +  K  I+F N+ + +      L+        I+G  ++  R K L +F+ G +Q++V
Sbjct: 240 ATNP-KRAIVFINRNEEIELTTLKLQYHKIKAYGIYGAAEKEQRKKALEDFRSGKVQILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +SDL+ARGLD+ DV H+FN D+P   + Y+HR+GRTGRA + G A +++ +++   I   
Sbjct: 299 SSDLSARGLDVKDVTHIFNLDLPENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRKY 358

Query: 361 EK 362
           EK
Sbjct: 359 EK 360


>gi|256390879|ref|YP_003112443.1| DEAD/DEAH box helicase [Catenulispora acidiphila DSM 44928]
 gi|256357105|gb|ACU70602.1| DEAD/DEAH box helicase domain protein [Catenulispora acidiphila DSM
           44928]
          Length = 854

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 126/349 (36%), Positives = 188/349 (53%), Gaps = 2/349 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL  ++V  + + G     PIQ  TIP  L    V G A+TG+GKT +F L  L  
Sbjct: 67  FTELGLPEELVKKLAENGVHNTFPIQAATIPDALAGRHVLGKARTGSGKTLAFGLAALAN 126

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  RAR   P  L+L PTRELA QV+D    YG      +A + GG P   Q   L RG
Sbjct: 127 LKGKRARKGKPLALVLVPTRELAMQVSDALTPYGFAVGADIAAVYGGAPMYKQVYSLRRG 186

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++L+ TPGR+ D   +G+  ++ +EI ++DEAD+M DMGF+P +  + S    T Q LL
Sbjct: 187 VELLVATPGRLTDLIEQGECDLSEVEIAILDEADQMADMGFMPIVTELLSQTDPTGQRLL 246

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCA-LLQQLLQ 240
           FSAT+   + ++   ++ +P    V   S  +A+   H  +   A  S   A +  +   
Sbjct: 247 FSATLDGAVDELVRQYMTDPVLHSVTADSEDSAQMDHHLLIVEPADKSMVTAEIAARHTP 306

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K     +   + + G S  A+HG + QR+R K L++FKEG + ++V
Sbjct: 307 GDDDGRRTILFARTKLGADRIAEKIREAGVSALALHGGMTQRARTKTLADFKEGRVPVLV 366

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           A+D+AARG+ +  +  V + D     ++Y+HR GRT RAG  G   TLV
Sbjct: 367 ATDVAARGIHVDGIDLVLHVDPAGDPKDYLHRAGRTARAGESGTVVTLV 415


>gi|291236621|ref|XP_002738237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 21-like
           [Saccoglossus kowalevskii]
          Length = 700

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 139/380 (36%), Positives = 217/380 (57%), Gaps = 26/380 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  LSP+ + ++         PIQ KT   V   HDV   A+TGTGKT +F LP++  
Sbjct: 120 FSNFRLSPQTIASLKARSITHLFPIQAKTFDYVYDGHDVIAQARTGTGKTLAFALPLVEK 179

Query: 63  LEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+    +  R P+ L++ PTRELA QV+++F+    N  L+   + GG  +  Q   + R
Sbjct: 180 LKNTEFKAGRPPQVLVMAPTRELAKQVSEDFQ--ASNPRLSTLCVYGGTAYWPQESAIRR 237

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV-----PF 176
           G DVL+ TPGRILD+  +  L ++ ++ +++DE DRMLDMGF   ++ I S       P 
Sbjct: 238 GVDVLVGTPGRILDYVQKNTLNLSQLKHVILDEVDRMLDMGFADTVEEILSASYKMDNPG 297

Query: 177 TR-QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKKC 232
              QTLLFSAT+ + + + ++ ++++  KR+++       TA T+EH  +A    Y ++ 
Sbjct: 298 ENPQTLLFSATLPEWVYRTAKKYMKSEIKRVDLIGQQKLKTATTVEH--LAIRCHYRQRA 355

Query: 233 ALLQQLLQSQDTMKNG--IIFCNQKK--NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           A +  ++Q   + K+G  +IF   KK  N + L  S+ +    V  +HG+I Q  R   L
Sbjct: 356 ATISDVVQVY-SGKHGRCMIFTETKKDANEMGLSSSIRQD---VQVLHGDIAQNQREITL 411

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             F++G  + +VA+D+AARGLDIP+V  +   + P  AENYIHR GRTGRAGR G +   
Sbjct: 412 KGFRDGKFRCLVATDVAARGLDIPEVDLIVMCEPPKDAENYIHRSGRTGRAGRTGVSVCF 471

Query: 349 VAKEDIKHIDAIEKLIEKKV 368
             K + +H   + KLIE++ 
Sbjct: 472 Y-KPNEEH---VLKLIERRA 487


>gi|325188903|emb|CCA23433.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 684

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 113/359 (31%), Positives = 200/359 (55%), Gaps = 8/359 (2%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           + GLS  +   +  AG     P+Q+++   +++  D+ G ++TG+GKT +F LP++  L 
Sbjct: 85  EFGLSDTLFSNLKKAGITDLFPVQVQSFSTMMKGVDLVGRSKTGSGKTLAFGLPIIEKLL 144

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
                 R P  LIL PTRELA QV+    +      L    ++GG+P+ +Q  ++  G D
Sbjct: 145 SRSGSRRNPGALILLPTRELATQVSSELSRLSPQ--LKTVTIVGGVPYHSQESRIRAGVD 202

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGRI+D F +  L   +++  V+DEAD ML  GF   ++ I S VP TRQ +++S
Sbjct: 203 IVVGTPGRIMDLFEKKTLSFEDVQFTVLDEADMMLKFGFQEAVETILSWVPETRQCVMWS 262

Query: 185 ATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           AT    +  +++ +L++   I++  +  +    T+ H  +   + Y  +   LQ++L+  
Sbjct: 263 ATFPKWVTSLTKKYLKDAVTIDLVGSEEAHVPTTVSHKAINVPSNY--RVVALQRILEKY 320

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            +    ++F   K     + + LE  G +V A+HG++ Q  R   + NF++G ++ +  +
Sbjct: 321 ASQGQSLVFTETKHEANEIANGLE--GCNVQALHGDLSQGVRASTMQNFRKGLVKTLACT 378

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           D+AARGLDI +V  V ++ +PN  EN++HR GRTGRAG+ G +      ++ + I  +E
Sbjct: 379 DIAARGLDIANVDLVVHYRLPNDRENFVHRAGRTGRAGKTGTSIVFFENQEYRDIKDLE 437


>gi|297676837|ref|XP_002816330.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Pongo
           abelii]
          Length = 621

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 197/361 (54%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 182 FKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 241

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 242 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMS 301

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 302 VKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 361

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + +N   + A +++   V    +Y K+
Sbjct: 362 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKE 416

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 417 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 476

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 477 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 536

Query: 351 K 351
           K
Sbjct: 537 K 537


>gi|198419625|ref|XP_002130533.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Ciona intestinalis]
          Length = 672

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 210/377 (55%), Gaps = 22/377 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF +  ++ +    +   G     PIQI++   V    DV   A+TGTGKT SF +P++ 
Sbjct: 91  DFNNFRITEQTKVLLKKKGVAYLFPIQIQSFNHVYDGKDVVAQARTGTGKTLSFAIPLVE 150

Query: 62  --ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I+ + +   R P+ L++ PTRELA QV  +F+   +   L+   + GG P+  Q + +
Sbjct: 151 KLIMNRCKDYGRPPKVLVMAPTRELAIQVRKDFQDISQG--LSSVCIYGGTPYFQQERSM 208

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+++ TPGRI+DH  +G L + ++E +V+DE D+MLDMGF P ++ I     +T  
Sbjct: 209 RGGVDIVVGTPGRIMDHVQKGNLQLGSVEHVVLDEVDQMLDMGFAPKVEEILGYA-YTEE 267

Query: 179 -----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS----TAETIEHCFVATYAQYS 229
                QTLLFSAT    ++  S  +++  + + V+T       TA T+EH  +A   QYS
Sbjct: 268 REGPPQTLLFSATCPPWVRNTSRKYMRPSETVHVDTIGKSLVRTATTVEH--LAIRCQYS 325

Query: 230 KKCALLQQLLQSQDTMKN-GIIFCNQKK--NVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
            +   +  ++Q         +IF + KK  N + +C +L++Q   V  +HG+I+QR R  
Sbjct: 326 DRAECIGNVVQMYSGQHGRAMIFTDTKKDANELVVCEALQQQKAQV--LHGDIEQRQREI 383

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  +++GT++ +VA+++AARGLDIP++  V     P+  ++YIHR GRTGRAGR G   
Sbjct: 384 TLKAYRDGTVRCLVATNVAARGLDIPEIDLVIQTSPPSDIDSYIHRSGRTGRAGRTGVCV 443

Query: 347 TLVAKEDIKHIDAIEKL 363
                 +   I  +E++
Sbjct: 444 CFYKPREDMMIKKVERV 460


>gi|296194575|ref|XP_002745046.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 2
           [Callithrix jacchus]
          Length = 704

 Score =  219 bits (557), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 203/368 (55%), Gaps = 14/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 268 LTFEEANLCQTLSNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 327

Query: 61  T-ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G    R      P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 328 AHMMRDGVTASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGH 387

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S  
Sbjct: 388 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 447

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +E+Q+++  FL+ N   + V         ++   V    Q+S
Sbjct: 448 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQT-VLQVGQFS 506

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  L++ L    D  +  ++F   KK    +   L ++  S  +IHG+ +QR R + L 
Sbjct: 507 KREKLVEILRNIGD--ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALG 564

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +  
Sbjct: 565 DFRSGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFF 624

Query: 350 AKEDIKHI 357
             E   H+
Sbjct: 625 DPESDNHL 632


>gi|17552642|ref|NP_497743.1| hypothetical protein C46F11.4 [Caenorhabditis elegans]
 gi|3874996|emb|CAB03765.1| C. elegans protein C46F11.4, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 811

 Score =  219 bits (557), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 129/366 (35%), Positives = 208/366 (56%), Gaps = 5/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA       ++ A+  + Y +PTPIQ   IP  L   DV GIA+TG+GKTA+++ P +  
Sbjct: 267 FAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVH 326

Query: 62  ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKL 119
           I+++   +    P  +I+ PTRELA QV    +K+ K YN+  +    GG  +E  N+  
Sbjct: 327 IMDQPDLKAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSKWEQSNELQ 386

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA++++CTPGRI+D    G         LV DEADRM DMGF   +++I+  V   RQ
Sbjct: 387 NEGAEMVVCTPGRIIDLVKMGATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPDRQ 446

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT   ++++++ + L +P RI           IE        Q  K   L++ L+
Sbjct: 447 CLMFSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVFVMQNQDVKLHWLIRNLV 506

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   ++   +IF  +K +  ++   L+ + F +  +HG++ Q  R + L  F++ + Q++
Sbjct: 507 EFA-SLGKVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRKKS-QIL 564

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++  V NFD+    + ++HRIGRTGRAG  G A+TLV ++DI+ +  
Sbjct: 565 VATDVAARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEKDIEMVGH 624

Query: 360 IEKLIE 365
           + K +E
Sbjct: 625 LVKNLE 630


>gi|260948446|ref|XP_002618520.1| eukaryotic initiation factor 4A [Clavispora lusitaniae ATCC 42720]
 gi|238848392|gb|EEQ37856.1| eukaryotic initiation factor 4A [Clavispora lusitaniae ATCC 42720]
          Length = 396

 Score =  219 bits (557), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 134/376 (35%), Positives = 202/376 (53%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L P++V  +   GY  P+ IQ + I  + +  DV   AQ+GTGKTA+F +  L  
Sbjct: 24  FDDLNLKPEIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQN 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++      +  + LIL PTRELA Q+ +     G   N+TV   IGG       +    G
Sbjct: 84  IDVNE---KATQALILAPTRELALQIQNVISHIGLYLNVTVHASIGGTSMSDDIEAFRSG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ D   R     + +++ ++DEAD ML  GF   I NI  L+P T Q +L
Sbjct: 141 VQIVVGTPGRVSDMIERRYFKTHKVKMFILDEADEMLSSGFKEQIYNIFKLLPETTQVVL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+ NP RI V     T E I+  ++    +  K   L    L   
Sbjct: 201 LSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQYYINVEEEEYKFDCLCD--LYDS 258

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            ++   +IFCN +  V NL   L+   F+V AIH ++ Q  R  I++ F+ G+ ++++++
Sbjct: 259 ISVTQAVIFCNTRSKVENLMAKLKANNFTVSAIHADLPQAERDTIMNEFRSGSSRILIST 318

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V K D+  +  IEK
Sbjct: 319 DLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTKLDVGMMREIEK 378

Query: 363 LIEKKVDWLNGDLSSL 378
               ++D +  D+ +L
Sbjct: 379 FYSTQIDEMPADIGAL 394


>gi|114049936|emb|CAK50953.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens]
 gi|114050158|emb|CAK51191.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens]
          Length = 499

 Score =  219 bits (557), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 121/347 (34%), Positives = 186/347 (53%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +  +++ A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 71  FADLDMPRELLAALGSQGVAVPFPIQSATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 130

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             K RA  R P  L+L PTRELA QV D    Y ++  L +A ++GG+P   Q   L  G
Sbjct: 131 TAKRRAEARQPLGLVLVPTRELAQQVTDALTPYARSVKLRLATVVGGMPIGRQASALRGG 190

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A++++ TPGR+ D   RG   ++ + + V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 191 AEIVVATPGRLKDLITRGDCRLDQVAVTVLDEADQMADMGFMPQVTALLDQVRPEGQRML 250

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  +    T+EH  +  +   + K A   ++    
Sbjct: 251 FSATLDRNVDLLVRRYLSDPVVHSVDPSAGAVTTMEHHVL--HVHGADKHAATTEIAARD 308

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   ++F + K  V  L   L   G    A+HG   Q  R + L+ FK+G + ++VA+
Sbjct: 309 GRV---LMFLDTKHAVDRLTEHLLNSGVRAAALHGGKSQPQRTRTLTQFKDGHVSVLVAT 365

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARG+ +  +  V N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 366 NVAARGIHVDSLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLV 412


>gi|68076513|ref|XP_680176.1| RNA helicase-1 [Plasmodium berghei strain ANKA]
 gi|56501072|emb|CAH93553.1| RNA helicase-1, putative [Plasmodium berghei]
          Length = 632

 Score =  219 bits (557), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 132/358 (36%), Positives = 203/358 (56%), Gaps = 19/358 (5%)

Query: 24  PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-----PRTLIL 78
           PT IQ++ +P +L   D+ GIA TG+GKT  FVLP++    +   R  +     P  LI+
Sbjct: 206 PTQIQMQGLPSILIGRDIIGIAFTGSGKTIVFVLPLIMTCLEAELRCPIEEGEGPLGLII 265

Query: 79  EPTRELAAQVADNFEKYGKNY-------NLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
            P+RELA+Q   N  KY   Y        L    +IGG+    Q K++++G  +L+ TPG
Sbjct: 266 CPSRELASQ-THNIIKYFCEYLYKDKFPMLKSLCVIGGVSTYEQGKEIKKGVHMLVATPG 324

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+ D  N+ ++ +     L  DEADR++D+GF   I+N+       RQTLLFSATM  ++
Sbjct: 325 RLNDMLNKKRMTLEQCRYLCFDEADRLIDLGFEEEIRNVLDNFSSQRQTLLFSATMPRKI 384

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
           Q+ +++ L NP  I +N   + A  ++      Y +   K + L Q+LQ   T    +IF
Sbjct: 385 QEFAKSTLVNP--IIINVGRAGAANLDVIQEVEYVKEEFKLSYLLQVLQK--TGPPVLIF 440

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           C  KK+V ++   L  +G +  AIHG++ Q  R++ ++ F+ G   ++V +D+A++GLD 
Sbjct: 441 CENKKDVDDVHEYLLLKGINAIAIHGSLGQTERLEAINLFRNGEKDVLVGTDVASKGLDF 500

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK--EDIKHIDAIEKLIEKK 367
           P + HV N+D+P   ENY+HRIGRTGR G+ G A T + K  E+   +D    LIE K
Sbjct: 501 PSIEHVINYDMPKDIENYVHRIGRTGRCGKTGIATTFINKNQEEAILLDLKALLIEAK 558


>gi|317123400|ref|YP_004097512.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043]
 gi|315587488|gb|ADU46785.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM
           43043]
          Length = 528

 Score =  219 bits (557), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 120/359 (33%), Positives = 184/359 (51%), Gaps = 7/359 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LG+   +  A+ D G   PTPIQ  T+P  L   DV G  +TG+GKT +F+LP++
Sbjct: 8   LTFGALGVPSALTAALADLGITTPTPIQAATLPDSLAGRDVLGRGRTGSGKTYAFLLPIV 67

Query: 61  TILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     R     PR LIL PTRELA Q+            L    + GG+    Q + 
Sbjct: 68  ARLAAAPTRRSPGRPRALILAPTRELATQIDTALAPLAATAGLNSLTIFGGVGQNPQVQG 127

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG DV++  PGR+ D   +G + ++++EI V+DEAD M D+GF+P ++ I    P T 
Sbjct: 128 LRRGVDVVVACPGRLEDLMGQGHVSLDSVEITVLDEADHMADLGFLPGVRRIMDKTPATG 187

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT+   +  + + FL +P+  E ++  S   T+ H     +  +    A L  +
Sbjct: 188 QRMLFSATLDGAINVIVKRFLTSPRTHEADSAQSPVSTMAH-----HVLHVTSDAHLAVI 242

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L         ++F   K     L   L   G     +HGN+ Q +R + + +F  G  Q 
Sbjct: 243 LDLAAAPGRKVVFTRTKHRAKKLAKQLNSSGVPAVELHGNLSQGARTRNMDDFHSGRAQT 302

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +VA+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   T++  + ++ +
Sbjct: 303 LVATDIAARGIHVDDVALVIHADPPVEHKAYLHRSGRTARAGADGTVVTMMLDDQVRDV 361


>gi|311271292|ref|XP_003133100.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Sus scrofa]
          Length = 738

 Score =  219 bits (557), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 129/353 (36%), Positives = 205/353 (58%), Gaps = 17/353 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ+KT   V +  D+   A+TGTGKT SF +P++  
Sbjct: 140 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 199

Query: 63  LEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ +  +   R P+ L+L PTRELA QVA +F+   K   L+VA   GG  +++Q   +
Sbjct: 200 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITKK--LSVACFYGGTSYQSQINHI 257

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   G+L ++ +  +V+DE D+MLD+GF   +++I      T  
Sbjct: 258 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 317

Query: 179 ----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
               QTLLFSAT    + KV++ ++++  +++++        A T+EH  +A    +S++
Sbjct: 318 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEH--LAIQCHWSQR 375

Query: 232 CALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A++  +LQ    +    IIFC  KKNV  +  +   +  + C +HG+I Q  R   L  
Sbjct: 376 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKG 434

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           F+EG+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 435 FREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 487


>gi|201067640|gb|ACH92926.1| vasa protein [Parhyale hawaiensis]
          Length = 707

 Score =  219 bits (557), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 133/365 (36%), Positives = 198/365 (54%), Gaps = 19/365 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F   GL   ++  +  AGY  PTPIQ   IP ++   D+ G AQTG+GKTA+F+LP+L  
Sbjct: 273 FGASGLRDLLISNIERAGYKTPTPIQRVCIPTIMAGRDIMGCAQTGSGKTAAFLLPILHG 332

Query: 61  -----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                       +    P  +++ PTRELA Q+ +   K+  +  +   +  GG    +Q
Sbjct: 333 ILASGGGNSGSMSSTAEPSAVVVAPTRELAIQIHNEARKFALDSIVRTVVCYGGASMNSQ 392

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS--L 173
            ++L+ G  VL+ TPGR+ D   RG++  +++  LV+DEADRMLDMGFI  I+ I +   
Sbjct: 393 YRQLQNGCAVLVATPGRLNDFVTRGRVSFSSVRYLVLDEADRMLDMGFIGDIEKIVNHQT 452

Query: 174 VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +P    RQTLLFSAT  +E+Q ++ N LQN     V T  +    +    V    +  K+
Sbjct: 453 MPAVGQRQTLLFSATFPEEIQTLACNHLQNYVFYAVGTVGAANTDVCQ-EVLNVPRQQKR 511

Query: 232 CALLQQLLQSQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             L+ ++   ++ M NG    +IF   K+    L   L  Q  +  +IHG+  Q  R + 
Sbjct: 512 EVLMSKI---EEFMANGDNKVLIFVETKRTADFLATLLSSQQLNSTSIHGDRFQSQREEA 568

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L+ FK G   ++VA+ +AARGLDI  V HV N+D+P   + Y+HRIGRTGR G  G A +
Sbjct: 569 LAQFKAGIRSILVATAVAARGLDIRGVSHVINYDLPKEVDEYVHRIGRTGRVGNKGHAVS 628

Query: 348 LVAKE 352
              +E
Sbjct: 629 FYDEE 633


>gi|242004721|ref|XP_002423227.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212506206|gb|EEB10489.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 579

 Score =  219 bits (557), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 121/344 (35%), Positives = 196/344 (56%), Gaps = 13/344 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  +   G+ +PT IQ +  P+ L   ++ GIA+TG+GKT S++LP +  
Sbjct: 101 FREAGFPDYVLKEIKRQGFSEPTVIQAQGWPIALSGRNLVGIAKTGSGKTLSYILPAIVH 160

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L++G      P  L+L PTRELA Q+ +  E +G +  +    + GG    +Q 
Sbjct: 161 INHQPRLQRGDG----PIVLVLAPTRELAQQIKEVTEDFGHSSGIRNTCIFGGAKRLSQA 216

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + LE+G +++I TPGR+LD  + GK  +     LV+DEADRMLDMGF P I+ I   +  
Sbjct: 217 RDLEKGVEIVIATPGRLLDFLDCGKTNLKRTTYLVLDEADRMLDMGFEPQIRKIFEQIKP 276

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKCAL 234
            RQ L++SAT    ++ +++ FL +  +I V +   S+    ++   V   ++  +K + 
Sbjct: 277 DRQVLMWSATWPKVVRNLAKEFLNDYTQINVGSLQLSANHNILQIIDVCQDSEKERKLST 336

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L + + S+   K  I+F   KK V  +   + + G+   +IHG+ +Q  R  +L +F+ G
Sbjct: 337 LLKEIMSEKENKT-IVFIETKKRVEEITRKMRRDGWPAESIHGDKNQSERDHVLQDFRNG 395

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
              ++VA+D+AARGLD+ DV  V NFD PN +E+Y+HRIGRT +
Sbjct: 396 RRPILVATDVAARGLDVEDVKFVINFDYPNNSEDYVHRIGRTAK 439


>gi|118362432|ref|XP_001014443.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89296210|gb|EAR94198.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 420

 Score =  219 bits (557), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 128/367 (34%), Positives = 204/367 (55%), Gaps = 18/367 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF D GL  +++  +++ G+ KP+P+Q +TIPL +    +   A+ GTGKTASFV+P+L 
Sbjct: 46  DFEDYGLKIELLRGIVEKGWDKPSPVQEETIPLTIAGSSIIARAKNGTGKTASFVIPILE 105

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA-----QN 116
            L+  +  ++   +LIL PTRELA QV+   ++ GK  N+ V +  GG  F+      QN
Sbjct: 106 QLDTTKNFIQ---SLILVPTRELALQVSSVAKELGKYLNVNVMVSTGGTSFKEDVLRLQN 162

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K  E    +++ TPGRILD   +    ++  +I+ +DEAD++L   F+  I+ I   +  
Sbjct: 163 K--ESPVHIIVATPGRILDLAKKNIANLSQCQIIALDEADKLLSQDFVLIIEEILEFLKK 220

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ +LFSAT  + +++  E  + + K + +       + +    V  Y  Y ++   +Q
Sbjct: 221 DRQIMLFSATFPNSVKQFKEKHMADCKTVNM------MDELTLKGVTQYYAYLEEKLKVQ 274

Query: 237 QL--LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            L  L ++  +   IIFCN  K V  L + + +QG+S   IH  ++Q  R K+  NF +G
Sbjct: 275 CLNHLAAKLQINQAIIFCNSTKRVELLANKIIEQGYSCFYIHAKMEQHHRNKVFHNFTQG 334

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             + +V+SDL  RG+D+  V  V NFD P  +E Y+HRIGR+GR G  G A   +  ED 
Sbjct: 335 QGRFLVSSDLFTRGIDVQTVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINFITDEDK 394

Query: 355 KHIDAIE 361
            ++  IE
Sbjct: 395 DNLIKIE 401


>gi|325119679|emb|CBZ55232.1| putative DEAD/DEAH box helicase [Neospora caninum Liverpool]
          Length = 694

 Score =  219 bits (557), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 199/371 (53%), Gaps = 27/371 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
             F + G    +   +    + +PT IQ    P  L   D+ GIAQTG+GKT  F+LP L
Sbjct: 282 FSFEEAGFPAPIQNQLKKMNFAEPTAIQKIGWPTALSGRDMIGIAQTGSGKTLGFLLPGL 341

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT---------------- 102
                +   A  + P  L+L PTRELA Q+     ++ +   L+                
Sbjct: 342 VHASAQPPLAPGQGPIVLVLAPTRELAMQIRHECMRFTEGLALSSSAEDQEGGQRSGVRF 401

Query: 103 -VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
             A + GG+P + Q  +L  GA++LI TPGR++D  + G   +  +  +V+DEADRM+DM
Sbjct: 402 RTACVYGGVPRQGQATELRNGAEILIATPGRLIDFLDLGVTNLKRVSYIVLDEADRMMDM 461

Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK-RIEVNTP--SSTAETIE 218
           GF P ++ I S V   RQTLL+SAT   E++ ++  F +    +++V      + A   +
Sbjct: 462 GFEPQVRKIFSQVRPDRQTLLWSATWPKEVRGLASEFCRTRVVKLQVGKADLQANANVTQ 521

Query: 219 HCFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
              V +  Q   +  ++LQ+ +  Q T+    IFC  K+    LC  L  +     AIHG
Sbjct: 522 RVEVVSSNQLQHRLLSVLQEDIAGQKTL----IFCETKRQCDQLCRELRYRQLRALAIHG 577

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           + +QR R +IL +F++G  ++++A+D+A+RGLDI DV  V N+DVP   E+YIHRIGRTG
Sbjct: 578 DKEQRERDRILHDFRKGDCEILLATDVASRGLDIHDVKFVINYDVPKNIESYIHRIGRTG 637

Query: 338 RAGRHGKAFTL 348
           RAG  G A + 
Sbjct: 638 RAGNKGTAISF 648


>gi|316968374|gb|EFV52655.1| eukaryotic initiation factor 4A-III [Trichinella spiralis]
          Length = 970

 Score =  219 bits (557), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 136/453 (30%), Positives = 228/453 (50%), Gaps = 40/453 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L  +++  +   G+ KP+ IQ + I  ++   DV   +Q+GTGKTA+F + +L +
Sbjct: 42  FEEMNLKRELLRGIYAYGFNKPSMIQKRAIRPIVSGRDVIAQSQSGTGKTATFSIGLLQV 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    ++R  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 102 ID---TQLRETQALVLAPTRELAQQIQKVVLALGDRMNVQAHACIGGTNVGEDIRKLDYG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD---------MGFIPYIQNITSL 173
             V++ TPGR+ D   R  L  +++++ V+DEAD ML          +GF   I +I   
Sbjct: 159 QHVVVGTPGRVFDMITRQNLRTDSLKVFVMDEADEMLTKGNELLYLILGFKDQIYDIYRF 218

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSK 230
           +P   Q ++ SAT+  E+ +++  F+  P RI V     T E I   FV    +   +  
Sbjct: 219 LPPGIQVVVISATLPHEILEMTGKFMTEPVRILVKRDELTLEGIRQYFVHVEREDWKFET 278

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            C L   +     T+   ++FCN +  V  L   +++  F+V AIHG +DQ+ R +++  
Sbjct: 279 LCDLYDSI-----TISQAVVFCNTRHKVEWLDEKMKESNFTVGAIHGEMDQKDRNEVVRK 333

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F++G  ++++++D+ +RGLDIP V  V N+DVP   E Y+HRIGR+GR GR G A     
Sbjct: 334 FRDGIYRVLISTDVWSRGLDIPGVSLVINYDVPTNREAYLHRIGRSGRYGRKGCAINFAT 393

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            EDI  +  IE     ++D +         P+  I + +   A   N I           
Sbjct: 394 TEDIPTLLEIESYYGTQIDEM---------PMNDILVNRLVLAATKNGI----------- 433

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQENDADSL 443
           +N     S+I +       KL++D++E+  D +
Sbjct: 434 RNVQENISYINIDRPFSAMKLKKDVEEDLVDQI 466


>gi|170595924|ref|XP_001902572.1| DEAD/DEAH box helicase family protein [Brugia malayi]
 gi|158589680|gb|EDP28579.1| DEAD/DEAH box helicase family protein [Brugia malayi]
          Length = 658

 Score =  219 bits (557), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 132/364 (36%), Positives = 201/364 (55%), Gaps = 26/364 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA  G    ++  +  + Y  PTPIQ ++IP  L   DV GIA+TG+GKT +++ P +  
Sbjct: 138 FAHFGFDEALMNVIRKSEYEHPTPIQAQSIPAALSGRDVLGIAKTGSGKTVAYLWPAIIH 197

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L++G      P +L++ PTRELA QV    ++Y K YN+ V    GG     Q 
Sbjct: 198 IMDQPDLKEGDG----PISLVIVPTRELALQVYQEAKRYCKVYNINVVCAYGGGNKWEQQ 253

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GA+++I TPGRI+D           +  LV DEADRM DMGF   +Q+I+  +  
Sbjct: 254 NALTEGAELVIATPGRIIDLVKINATNFTRVTFLVFDEADRMFDMGFEAQVQSISDHIRP 313

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRI---EVNTPSS----TAETIEHCFVATYAQYS 229
            RQ L+FSAT   +++K++   L +P RI   EV   +S    T E +E+         +
Sbjct: 314 DRQCLMFSATFKSKVEKLAREALTDPVRIVQGEVGEANSDVIQTVEVLENA-------DA 366

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K   LL  L++   +M   +IF  +K +  ++ + L  + F    +HG++ Q  R + L 
Sbjct: 367 KWQWLLNHLVKFS-SMGKVLIFVTKKIHAEDVANRLRTKDFKPILLHGDMLQAERNEKLQ 425

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F++    ++VA+D+AARGLDIP++  V NFD+    + ++HRIGRTGRAG+ G A+TLV
Sbjct: 426 AFRKDA-NILVATDVAARGLDIPEIKTVINFDLARDIDTHVHRIGRTGRAGQRGWAYTLV 484

Query: 350 AKED 353
            + D
Sbjct: 485 QESD 488


>gi|114647104|ref|XP_001152105.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2 [Pan
           troglodytes]
          Length = 796

 Score =  219 bits (557), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 129/353 (36%), Positives = 195/353 (55%), Gaps = 6/353 (1%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   L+  
Sbjct: 13  GLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTH 72

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
            A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L    D++
Sbjct: 73  SAQT-GARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPDII 131

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR++       L + ++E +V DEADR+ +MGF   +Q I + +P   QT+LFSAT
Sbjct: 132 IATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVLFSAT 191

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLLQSQDT 244
           +   L + +   L  P  I ++  +   E ++  F  V    + +    LL+ +++ QD 
Sbjct: 192 LPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLRNMVRPQDQ 251

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
               ++F   K +   L   L  Q  S   I+  +D  +R   L+ F  G    ++ +DL
Sbjct: 252 T---VVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDL 308

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA ++I ++
Sbjct: 309 AARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYL 361


>gi|188529679|gb|ACD62526.1| Vasa short form [Silurus meridionalis]
          Length = 641

 Score =  219 bits (557), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 144/427 (33%), Positives = 231/427 (54%), Gaps = 33/427 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 203 MTFEEAQLCETLNRNVAKSGYVKPTPVQKHGIPIIFAGRDLMACAQTGSGKTAAFLLPIL 262

Query: 61  T-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G A      V+ P  +I+ PTREL +Q+     K+     +   ++ GG     
Sbjct: 263 QQLMNDGVATSKFSEVQEPEVIIVAPTRELISQIYLEARKFAYGTCVRPVVVYGGTSTGF 322

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ---NIT 171
             +++ +G +VL  TPGR+LD   RG++ ++ +  LV+DEADRMLDMGF P ++   N  
Sbjct: 323 TIREVLKGCNVLCGTPGRLLDIIGRGEVGLSKVRYLVLDEADRMLDMGFEPTMRKLVNSP 382

Query: 172 SLVP-FTRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYS 229
            + P   RQTL+FSAT  +++Q+++ +FL+ +   + V         IE   +    +YS
Sbjct: 383 GMPPKEERQTLMFSATYPEDIQRLASDFLKVDYLFLAVGVVGGACSDIEQNIIQV-TRYS 441

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL+ LL++  T +  ++F   K++   +   L ++     +IHG+ +QR R K L 
Sbjct: 442 KREQLLE-LLKATGTERT-MVFVETKRSADFIATFLCQEKVPTTSIHGDREQREREKALG 499

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G   ++VA+ +AARGLDI  V +V NFD+P   + Y+HRIGRTGR G  G+A +  
Sbjct: 500 DFRTGQCPVLVATSVAARGLDIEQVQNVINFDLPKYIDEYVHRIGRTGRCGNTGRAVSFF 559

Query: 350 AKE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
             E D     A+ K+       L+G    +   LE++  + H            +TGF  
Sbjct: 560 DPESDTPLARALVKV-------LSGAKQEVPSWLEEVAYSAHG-----------TTGFSP 601

Query: 409 RKKNYSS 415
             K ++S
Sbjct: 602 HGKVFAS 608


>gi|46111511|ref|XP_382813.1| hypothetical protein FG02637.1 [Gibberella zeae PH-1]
 gi|91206544|sp|Q4IJH1|DBP3_GIBZE RecName: Full=ATP-dependent RNA helicase DBP3
          Length = 581

 Score =  219 bits (557), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 127/352 (36%), Positives = 188/352 (53%), Gaps = 16/352 (4%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
           A Y  PTPIQ  + P  L   DV G+A+TG+GKT +F LP +  +     + +  + +++
Sbjct: 179 ANYKAPTPIQSASWPFTLSGRDVIGVAETGSGKTMAFALPCVEAISA--LKHKHTKAVVV 236

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA Q  +          +    L GG   + Q   L RGAD+++ TPGR+ D  +
Sbjct: 237 SPTRELAMQTYEQMASVAALNRMKCVCLYGGASKDDQRNLLNRGADIIVATPGRLKDFMS 296

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTRQTLLFSATMTDELQKVSE 196
            G + +++    V+DEADRMLD GF   I+ I S  P    RQTL+F+AT    +Q ++ 
Sbjct: 297 DGTVDLSHSAFAVLDEADRMLDKGFEEDIKMILSSCPPREKRQTLMFTATWPQSVQTLAA 356

Query: 197 NFLQNPKRIEVNT--PSSTAETIEHCFVATYAQY-------SKKCALLQQLLQSQDTMKN 247
            F+ +P +I + +    +    +E    A  +Q         K+  LL+ L + Q   K 
Sbjct: 357 TFMVSPVKIAIGSGGKETAGGAVELQANARISQSVEVLEPRGKEFRLLEVLKEHQQGSKK 416

Query: 248 G---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
               ++FC  KK    + + L ++G  V  IHG++ Q  R + L  FK G   ++VA+D+
Sbjct: 417 NDRILVFCLYKKEATRIENFLSRKGIRVGGIHGDLRQEQRTRSLEAFKSGQTPVLVATDV 476

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG+ G+A T    ED  H
Sbjct: 477 AARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKTGQAITFFTVEDKSH 528


>gi|114687995|ref|XP_528902.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Pan
           troglodytes]
 gi|332860426|ref|XP_003317435.1| PREDICTED: probable ATP-dependent RNA helicase DDX53 [Pan
           troglodytes]
          Length = 631

 Score =  219 bits (557), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 123/361 (34%), Positives = 205/361 (56%), Gaps = 7/361 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK---G 66
           P ++ +++  G VKPTPIQ +  P++LQ  D+  +AQTGTGKT S+++P    L+     
Sbjct: 231 PDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIEVAQTGTGKTLSYLMPGFIHLDSQPIS 290

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTR+LA  V     KY     L    + GG     Q + + +G D++
Sbjct: 291 REQRNGPGMLVLTPTRKLALHVEAECSKYSYK-GLKSICVYGGRNRNGQIEDISKGVDII 349

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + +I  LVIDEAD+MLDM F P I  I   V   RQT++ SAT
Sbjct: 350 IATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIMKILLDVRPDRQTVMTSAT 409

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
             D +++++ ++L++P  + V   +  A  T++   + T  +  +K AL Q+ +++    
Sbjct: 410 WPDTVRQLALSYLKDPMMVYVGNLNLVAVNTLKQNIIVTTEK--EKQALTQEFVENMSPN 467

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F +QK    +L      QG S  ++HGN +Q  R + + +FK G I++++ +D+ 
Sbjct: 468 DKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDRERAVEDFKSGNIKILITTDIV 527

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ++GLD+ DV HV+N+D P   + Y+HR+G  GR G+ G + TL+ + D K    + K+++
Sbjct: 528 SQGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELIKILD 587

Query: 366 K 366
           +
Sbjct: 588 R 588


>gi|126175510|ref|YP_001051659.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125998715|gb|ABN62790.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 443

 Score =  219 bits (557), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 137/382 (35%), Positives = 212/382 (55%), Gaps = 20/382 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF----- 55
           + FA+LGL+  ++ A L A    PT +Q   IP +L   D+  +AQTG+GKT +F     
Sbjct: 13  LTFAELGLNSALLKA-LPASLKYPTRVQQLAIPAILAGRDLLALAQTGSGKTLAFGLPLL 71

Query: 56  --VLPMLTILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGG 109
             +L       +G   V+ P  + L+L PTRELA QV +  +      + +L + LL GG
Sbjct: 72  QQLLLQQQTQLQGAKSVQSPNAQALVLVPTRELALQVTEALQAVASQLSASLIIQLLCGG 131

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +P E Q  +L     VL+ TPGR+LD   +  + +++I+ LV+DEADR+L+MGF P +Q 
Sbjct: 132 VPLEDQLVELATKPQVLVATPGRLLDLCKQSHVSLDSIKHLVLDEADRLLEMGFWPDVQK 191

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQN-PKRIEVNTPSSTAETIEH--CFVATYA 226
           + + +P  +QT LFSAT+ + L  ++   L N P R+E +  +S A  IE     V   +
Sbjct: 192 LMAFMPKLKQTSLFSATLPEALDTLAGKLLVNEPLRVEAHKVNSVAGEIEEQLYLVNKGS 251

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           +     ALL+Q   +Q      ++F + + +   +   L K G  V A+HG  DQ  R +
Sbjct: 252 KAQVLIALLKQYQWAQ-----VLVFISARDDADAVAKRLAKAGMKVAALHGEKDQAVRSQ 306

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L++FK   IQ++VA+DL ARG+ +  +  V N D+P  A  Y+HRIGRT RAG  G A 
Sbjct: 307 TLADFKANRIQVLVATDLMARGIHVDALPVVINLDLPMSAPVYVHRIGRTARAGEKGLAI 366

Query: 347 TLVAKEDIKHIDAIEKLIEKKV 368
           +LV   ++  + AI  L  +++
Sbjct: 367 SLVCHSEMATLTAIRSLTAREL 388


>gi|66363178|ref|XP_628555.1| eIF4A-1; eukaryotic translation initiation factor 4A-1; RNA SFII
           helicase [Cryptosporidium parvum Iowa II]
 gi|46229820|gb|EAK90638.1| eIF4A-1; eukaryotic translation initiation factor 4A-1; RNA SFII
           helicase [Cryptosporidium parvum Iowa II]
          Length = 396

 Score =  219 bits (557), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 198/379 (52%), Gaps = 10/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++GL   ++  +   G+  P+ IQ + I  ++Q  D    +Q+GTGKT  F +  L I
Sbjct: 24  FEEMGLKDNLLRGIYSYGFEFPSAIQRRAIVPIIQGRDTIIQSQSGTGKTCVFSVGALEI 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             K +  V  P  LIL PTRELA Q        G   ++     IGG   +   K L  G
Sbjct: 84  CSKSKENV--PMVLILSPTRELAEQSEKVCTSIGDYLDIRAHSCIGGKKLKDDIKALNSG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+L    +G L    I++L+IDEAD M D GF   + +I   +P   QT+L
Sbjct: 142 VSIISGTPGRVLQMIEQGYLSTKKIKLLIIDEADEMFDYGFKTQVYDIYKYLPPRIQTVL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+ D++  +++ F++NP +I V     + + I    V    +   +   C L   L 
Sbjct: 202 VSATLPDDILVMAQKFMRNPLQILVPKEEVSLDKIRQYHVQVEEEKWKFETLCDLYDTL- 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   IIFCN K  V  L   + +  F+V  +HG++ Q +R +IL  F+EG  +++
Sbjct: 261 ----TVTQSIIFCNTKNKVEWLSKKMMENHFTVSFVHGDLPQVTREEILREFREGKTRVL 316

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL  RG+D+  V  V N+D+P   E YIHRIGR+GR GR G A  L+ KED   +  
Sbjct: 317 ITTDLWGRGIDVQQVNLVVNYDLPINKELYIHRIGRSGRFGRSGIAINLITKEDESMLSL 376

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +E+    K+  L G++ +L
Sbjct: 377 LERFYSIKISKLPGNVKNL 395


>gi|149038674|gb|EDL92963.1| rCG22084, isoform CRA_b [Rattus norvegicus]
          Length = 689

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/355 (36%), Positives = 202/355 (56%), Gaps = 21/355 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ+KT   V +  D+   A+TGTGKT SF +P++  
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195

Query: 63  LEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ +  +   R P+ L+L PTRELA QVA +F+   +  N  VA   GG  +++Q  ++
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLN--VACFYGGTSYQSQINQI 253

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-----TSLV 174
             G D+L+ TPGRI DH   G+L ++ +  +V+DE D+MLD+GF   +++I      S  
Sbjct: 254 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKSDS 313

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEV-----NTPSSTAETIEHCFVATYAQYS 229
               QTLLFSAT    + KV++ ++++  R E            A T+EH  +A    +S
Sbjct: 314 EDNPQTLLFSATCPQWVYKVAKKYMKS--RYEQVDLVGKMTQKAATTVEH--LAIQCHWS 369

Query: 230 KKCALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           ++ A++  +LQ    +    IIFC  KKNV  +  +   +  + C +HG+I Q  R   L
Sbjct: 370 QRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITL 428

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
             F+EG+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 429 KGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 483


>gi|114603670|ref|XP_001144645.1| PREDICTED: DEAD-box protein abstrakt isoform 1 [Pan troglodytes]
          Length = 606

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/344 (37%), Positives = 191/344 (55%), Gaps = 17/344 (4%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-----PR 74
           G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++    +   R+       P 
Sbjct: 184 GIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPY 243

Query: 75  TLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIPFEAQNKKLERGADVLIC 128
            LI+ P+RELA Q     E Y +         L  AL IGG+  + Q + +  G  +++ 
Sbjct: 244 GLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVA 303

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I S     RQTLLFSATM 
Sbjct: 304 TPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMP 363

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS-QDTMKN 247
            ++Q  +++ L  P  + +N   + A +++   V    +Y K+ A +  LL+  Q T   
Sbjct: 364 KKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKEEAKMVYLLECLQKTPPP 418

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            +IF  +K +V  +   L  +G    AIHG  DQ  R K +  F+EG   ++VA+D+A++
Sbjct: 419 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 478

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + K
Sbjct: 479 GLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 522


>gi|34364998|emb|CAE46035.1| hypothetical protein [Homo sapiens]
          Length = 496

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 197/361 (54%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 57  FKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 116

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 117 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMS 176

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 177 VKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 236

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + +N   + A +++   V    +Y K+
Sbjct: 237 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKE 291

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 292 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 351

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 352 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 411

Query: 351 K 351
           K
Sbjct: 412 K 412


>gi|71656836|ref|XP_816959.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70882121|gb|EAN95108.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 617

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 203/357 (56%), Gaps = 10/357 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-LT 61
           F+DL     +  + +D GY +PTPIQ    P++L   D+ G+A+TG+GKT +F++P  L 
Sbjct: 72  FSDLVAPDSIHQSFIDLGYKEPTPIQSIAWPILLNSRDLVGVAKTGSGKTMAFMVPAALH 131

Query: 62  ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           I+ +   R    P  L+L PTRELA Q+ +   K  +    +    L GG P   Q + L
Sbjct: 132 IMAQPPVRPGDGPIALVLAPTRELAVQIEEETRKVLRRIPTIATTCLYGGAPKGPQIRTL 191

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  V I TPGR++D        +  +  LV+DEADRMLDMGF   I+ I S +   RQ
Sbjct: 192 RAGVHVAIATPGRLIDLLEMRATNLLRVTYLVLDEADRMLDMGFEIQIRKICSQIRSDRQ 251

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYSKKCALLQQ 237
           TL+FSAT   E++ ++ +F ++  R+ V +    A  +  +H  V    +Y K+   L++
Sbjct: 252 TLMFSATWPQEIRNLAASFQRDFIRVHVGSEDLVANNDVCQHVIVVE--EYDKQ-RRLEE 308

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEK-QGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LQ     +  +IF   K+   +L  SL +  G +V AIHG+ +Q  R  +L  F+    
Sbjct: 309 ILQKLGRQRV-LIFVKTKRTADSLHGSLRRILGGAVMAIHGDKEQSQRDYVLDRFRRDDR 367

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDI ++  V NFD+P   E+Y+HRIGRTGRAG+ G A++ V+  D
Sbjct: 368 SVLVATDVAARGLDIKNLDVVINFDMPTNIEDYVHRIGRTGRAGQRGDAYSFVSGAD 424


>gi|330994757|ref|ZP_08318679.1| Cold-shock DEAD box protein A-like protein [Gluconacetobacter sp.
           SXCC-1]
 gi|329758018|gb|EGG74540.1| Cold-shock DEAD box protein A-like protein [Gluconacetobacter sp.
           SXCC-1]
          Length = 376

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/371 (35%), Positives = 201/371 (54%), Gaps = 14/371 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ +GL  +VV A+   G   P+ IQ   IP V+   DV   A TG+GKT +F  P++++
Sbjct: 8   FSGMGLDGRVVAALARMGLQAPSAIQGAVIPPVMAGRDVEARAGTGSGKTVAFAAPIVSM 67

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   E   +RVR    L+L PTRELA Q+A       +   L V    GG    AQ + L
Sbjct: 68  LMARETDNSRVR---CLVLAPTRELAGQIAGVLRGLARGGGLRVMQATGGTARVAQARTL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  +++ TPGR+ D  + G+L ++ + I V+DEADRMLD GF   +  + + +P   Q
Sbjct: 125 ADGTAIVVGTPGRVTDLVHGGELDLSAVGIFVLDEADRMLDPGFAEEMLALAAALPPRHQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQ 237
           TLLFSAT+   + +++   L  P R+ +    + A  I     FV    +     A L+Q
Sbjct: 185 TLLFSATLPPAMAELAARLLHRPTRVSMAVEDAPAPRIAQYAIFVPMRHKTQATLACLRQ 244

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              +Q  M    +F   ++    +  ++        AIHG+  Q  R ++L +F++G + 
Sbjct: 245 -YGTQRVM----VFVRTRQEADGVARAISAL-VPAIAIHGDHSQARRERMLRDFRQGRVG 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI DV  V N D+P + E+Y+HRIGRT RAGR G A  L A E+ + +
Sbjct: 299 VLVATDVMARGIDIDDVALVINHDIPPQPESYVHRIGRTARAGRRGVAVALCAPEERQAL 358

Query: 358 DAIEKLIEKKV 368
             IE+L  +++
Sbjct: 359 REIERLTGQRI 369


>gi|29351661|gb|AAH49217.1| DDX10 protein [Homo sapiens]
          Length = 745

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 210/376 (55%), Gaps = 21/376 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P+L  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 63  LEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     R++   T     LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +
Sbjct: 131 L----YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE 186

Query: 118 KLERGADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++    ++L+CTPGR+L H +        ++++LV+DEADR+LDMGF   +  +   +P 
Sbjct: 187 RIN-NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK 245

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCAL 234
            RQTLLFSAT T  ++ ++   L+NP+ + V+  +  ST  T+E  ++    Q  +K ++
Sbjct: 246 KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQ--QKISV 303

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL--EKQGFSVCAIHGNIDQRSRMKILSNFK 292
           L   L+S    K  I+F +  K V  L       + G S+ A+HG   Q  RM++ + F 
Sbjct: 304 LYSFLRSH-LKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFV 362

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                ++ A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   
Sbjct: 363 RKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPS 422

Query: 353 DIKHIDAIEKLIEKKV 368
           +      +++L++KKV
Sbjct: 423 EKA---MVQQLLQKKV 435


>gi|50548003|ref|XP_501471.1| YALI0C05368p [Yarrowia lipolytica]
 gi|74660055|sp|Q6CCZ1|PRP5_YARLI RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|49647338|emb|CAG81772.1| YALI0C05368p [Yarrowia lipolytica]
          Length = 974

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 135/407 (33%), Positives = 211/407 (51%), Gaps = 46/407 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +  LGL    +  + D  Y KPT IQ + IP V+   DV  +A+TG+GKT +F+LPML  
Sbjct: 380 WTQLGLPGPTMGVLNDLRYDKPTSIQAQAIPAVMSGRDVISVAKTGSGKTLAFLLPMLRH 439

Query: 63  LEKGRARVRM-----------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
           + K R  V             P  +I+ PTREL  Q+  +   +     LT     GG P
Sbjct: 440 I-KHRVGVETHTTTLSGASSHPLGVIITPTRELCVQIYRDLRPFLAALELTAVCAYGGSP 498

Query: 112 FEAQNKKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQ 168
            + Q   L++G  +++CTPGR++D    N+G++L ++ +  LVIDEADRM DMGF P + 
Sbjct: 499 IKDQIAALKKGTHIIVCTPGRMIDLLAANQGRVLSLSRVTFLVIDEADRMFDMGFEPQVL 558

Query: 169 NITSLVPFTRQTLLFSATMTDELQKVSENFLQ-------NPKRIEVNTPSSTAETIEHCF 221
            +T  +   RQT+LFSAT   ++++++   L         P  I V   S  A  I   F
Sbjct: 559 KLTQSIRPDRQTVLFSATFPKKMEQLARRVLSKRSSDSLGPIEIIVGARSVVASEITQ-F 617

Query: 222 VATYAQYSKKCALLQQLL-----------QSQDTMKNG------------IIFCNQKKNV 258
           V  +     K   L ++L           QS+  +  G            +IF  ++++ 
Sbjct: 618 VEVFQNEKSKFPRLLEVLGKYFAQGFFDEQSEGRVGTGESAATPIPNPKCLIFVERQESA 677

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            +L   L + G+   +IHG  +Q  R + +S+FK G + +++A+ +AARGLD+  +G V 
Sbjct: 678 DSLLKELIQSGYPCLSIHGGKEQADRDQAISDFKSGLVSVLIATSVAARGLDVKGLGLVV 737

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           N+D PN  E+Y+HR+GRTGRAG+ G A T +  +  +    I + I+
Sbjct: 738 NWDSPNHMEDYVHRVGRTGRAGQKGTALTFLLSDQERLAAEISRAIK 784


>gi|126291595|ref|XP_001381058.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 649

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/361 (36%), Positives = 198/361 (54%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 210 FKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 269

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGK------NYNLTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +      +  L  AL IGG+ 
Sbjct: 270 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPPLRCALCIGGMS 329

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 330 VKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 389

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + +N   + A +++   V    +Y K+
Sbjct: 390 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKE 444

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 445 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 504

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F++G   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 505 FRDGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 564

Query: 351 K 351
           K
Sbjct: 565 K 565


>gi|310790877|gb|EFQ26410.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 396

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 214/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L  +++  V   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F    +++
Sbjct: 25  FDDMNLKSELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATF---SISV 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    V+  + LIL PTRELA Q+       G   N+     IGG       K L+ G
Sbjct: 82  LQKIDTNVKACQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVRDDMKALQDG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 142 PQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 202 LSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 260

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A+
Sbjct: 261 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIAT 319

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  ED++ +  IE+
Sbjct: 320 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTAEDVRMMREIEQ 379

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 380 FYSTQIEEMPMNVADL 395


>gi|255543078|ref|XP_002512602.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223548563|gb|EEF50054.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 772

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 212/379 (55%), Gaps = 12/379 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +  + LGL  ++V ++   G     PIQ   +   L+  D+   A+TGTGKT +F +P++
Sbjct: 120 LAISKLGLPQRLVESLEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPII 179

Query: 61  TILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             + +      R   R+PR L+L PTRELA QV     +      L+   + GG+ +  Q
Sbjct: 180 KCITEDDKSSQRRTGRLPRVLVLAPTRELAKQVEKEINESAPY--LSTVCVYGGVSYITQ 237

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG DV++ TPGRI+D  N G L +  +E LV+DEAD+ML  GF   ++ I   +P
Sbjct: 238 RNALSRGVDVVVGTPGRIIDLINSGSLKLGEVEYLVLDEADQMLSFGFEEDVEVILENLP 297

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCA 233
             RQ++LFSATM   ++K++  +L NP +I++  +     AE I+   ++T A  + K +
Sbjct: 298 SKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAEGIKLYAISTNA--TSKRS 355

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +L  L+         IIF   K++   +   L     +  A+HG+I Q  R + L+ F++
Sbjct: 356 ILSDLVTVYAKGGKTIIFTQTKRDADEVSMVLTNS-IASEALHGDISQHQRERTLNGFRQ 414

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+D+A+RGLDIP+V  V ++++PN  E ++HR GRTGRAG+ G A  +     
Sbjct: 415 GKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAVLMFTSSQ 474

Query: 354 IKHIDAIEKLIEKKVDWLN 372
            + + ++E+ +  + ++++
Sbjct: 475 RRTVKSLERDVGCRFEFVS 493


>gi|332206915|ref|XP_003252542.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
           DDX23-like [Nomascus leucogenys]
          Length = 778

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 122/354 (34%), Positives = 193/354 (54%), Gaps = 39/354 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      ++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q 
Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572

Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           +                          RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 573 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632

Query: 211 SSTAETIEH-CFVATYAQYSKK-CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
               E +E   F+ + ++  KK  A+L+Q           IIF NQKK    L  SLEK 
Sbjct: 633 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322
           G++ C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+
Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDM 741


>gi|327351907|gb|EGE80764.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 1205

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 127/372 (34%), Positives = 200/372 (53%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  + +  +    Y  PT IQ + IP ++   DV G+A+TG+GKT +F+LPM   
Sbjct: 574 WSQCGLGVQTLDVIRKLNYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRH 633

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R    M  P  LI+ PTRELA Q+    + + K  +L      GG P + Q  +L+
Sbjct: 634 IMDQRPLENMEGPIGLIMTPTRELATQIHKECKPFLKALSLRAVCAYGGAPIKDQIAELK 693

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   V   
Sbjct: 694 RGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRILGNVRPQ 753

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQYSKKCALL 235
           RQT+LFSAT    ++ ++   L  P  I V   S  A  I           ++ +  ALL
Sbjct: 754 RQTVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAPEITQVVEVRNEDTKFVRLLALL 813

Query: 236 QQLL-QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             L    ++     +IF ++++    L   L  +G+   +IHG  DQ  R   + +FK G
Sbjct: 814 GDLYADDKNEDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIDDFKAG 873

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++  
Sbjct: 874 VFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQE 933

Query: 355 KHIDAIEKLIEK 366
           ++   I K +++
Sbjct: 934 RYSVDISKALKQ 945


>gi|257866121|ref|ZP_05645774.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC30]
 gi|257872451|ref|ZP_05652104.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC10]
 gi|257875753|ref|ZP_05655406.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC20]
 gi|257800055|gb|EEV29107.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC30]
 gi|257806615|gb|EEV35437.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC10]
 gi|257809919|gb|EEV38739.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC20]
          Length = 448

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 129/366 (35%), Positives = 205/366 (56%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F      P +  A+ D  + KPT +Q K IP++ +   V G +QTG+GKT +F+LP++
Sbjct: 1   MSFESFKFQPFIYEALADKKFSKPTEVQEKLIPVIQKGRSVVGQSQTGSGKTHTFLLPLM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKK 118
             ++  +  V++   +I  P+RELA Q+    ++ G  ++  + V+  +GG   + Q  +
Sbjct: 61  DKIDAEKDEVQV---VITAPSRELATQIYHAAKQIGGFHDPEIRVSNFVGGTDKQRQLSR 117

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+ +   V+I TPGRILD  N   L ++   + V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LQNQQPHVVIGTPGRILDMINEQALGVHTANVFVVDEADMTLDMGFLEEVDQIAGRLPEK 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+ ++L+   + ++ NP   E+ + +  ++TIE+  ++T  + + K  L+ Q
Sbjct: 178 LQMLVFSATIPEKLRPFLKKYMANPLIEEIKSKAVISDTIENWLISTKGKNTNK--LIYQ 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL +       I+F N K  V  +   L++QG  V  IHG+I  R R +I+   +    Q
Sbjct: 236 LLTTGHPYL-AIVFANTKSRVDEITDYLKEQGLKVAKIHGDISPRERKRIMRQVQNLDYQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N ++P   + +IHR+GRTGR    G A TL    D   I
Sbjct: 295 YVVATDLAARGIDIEGVSHVINAEIPADLDFFIHRVGRTGRNQMDGTAITLYDPSDEGAI 354

Query: 358 DAIEKL 363
            AIE L
Sbjct: 355 QAIEDL 360


>gi|74207549|dbj|BAE40025.1| unnamed protein product [Mus musculus]
          Length = 622

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/361 (36%), Positives = 197/361 (54%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G + PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 183 FKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 242

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 243 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMS 302

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +  G  +++ TPGR++D   +  + ++    L +DEAD M+DMGF   I+ I 
Sbjct: 303 VKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADSMIDMGFEGDIRTIF 362

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + +N   + A +++   V    +Y K+
Sbjct: 363 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKE 417

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 K 351
           K
Sbjct: 538 K 538


>gi|221113161|ref|XP_002160326.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX41
           [Hydra magnipapillata]
          Length = 605

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 138/405 (34%), Positives = 218/405 (53%), Gaps = 39/405 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVK-PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F D+   P+ +   L    +K PTPIQ++ +P VL   D+ GIA TG+GKT  F LP++ 
Sbjct: 167 FKDMKF-PRSILQCLKRKDIKSPTPIQMQGLPTVLSGRDMIGIAFTGSGKTLVFTLPIVM 225

Query: 62  I---------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY------NLTVALL 106
                       KG      P  L++ P+RELA Q  D   ++ ++        L + L 
Sbjct: 226 FCVEQEKVLPFRKGEG----PYGLLIAPSRELAKQTYDIILEFSESLRMDGAPTLKILLC 281

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
           IGG   + Q + ++ G  +++ TPGR++D  N+  + ++    L +DEADRM+DMGF   
Sbjct: 282 IGGTSVKDQAENIKHGVHIVVATPGRLMDLLNKKLITLDVCRFLCLDEADRMIDMGFEDD 341

Query: 167 IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
           ++ I S     RQTLLFSATM  ++Q  + + L  P  + VN   + A +++      Y 
Sbjct: 342 VRTIFSYFKGQRQTLLFSATMPKKIQNFARSALVQP--VTVNVGRAGAASLDIIQEVEYV 399

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           +  +K   L + LQ   T    +IF  +K +V ++   L  +G    AIHG+  Q  R +
Sbjct: 400 KQEEKILFLLKCLQK--TAPPVLIFAEKKSDVDDIHEYLLLKGVEAVAIHGDKAQEERHR 457

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            ++ F+E    ++VA+D+A++GLD P++ HV N+D+P+  ENY+HRIGRTGR+G+ G A 
Sbjct: 458 SVTQFRERKKDVLVATDVASKGLDFPNIQHVINYDMPDDIENYVHRIGRTGRSGKTGYAT 517

Query: 347 TLVAKE-------DIKHIDAIEKLIE--KKVDWLNGDLSSLNPPL 382
           T + K        D+KH+     LIE  +KV     ++ S +P L
Sbjct: 518 TFINKNCEESVLMDLKHL-----LIEAKQKVPLCLAEMESKDPYL 557


>gi|167518760|ref|XP_001743720.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777682|gb|EDQ91298.1| predicted protein [Monosiga brevicollis MX1]
          Length = 787

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 122/355 (34%), Positives = 198/355 (55%), Gaps = 2/355 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V  A+   GY  PTPIQ KTIPL++   DV  +A+TG+GKTA+F++P+   
Sbjct: 4   FQAMGLSQAVARAINRKGYKVPTPIQRKTIPLLMAGQDVVAMARTGSGKTAAFLIPLFER 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   ARV + R L+L PTRELA Q     ++ G+  +L   L++GG   ++Q   +   
Sbjct: 64  LKNHSARVGI-RALVLSPTRELALQTFKFVKELGRFSDLRSILILGGDSMDSQFGDMHTN 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR L      +L +   E +V DEADR+ +MGF   ++ I + +P TRQT L
Sbjct: 123 PDIVVATPGRFLHLIVEMELSLVTTEYVVFDEADRLFEMGFAEQLREIMARLPDTRQTTL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L   +   L+ P  + ++  +   E ++  F     +  K   LL  L +  
Sbjct: 183 FSATLPKVLVDFARAGLKEPALVRLDADTKLPEQLQTQFFHCRRE-DKPALLLYALREII 241

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  +IF   K +V  L   L K  F     +G++D  +R   ++ F+ G   +++ +
Sbjct: 242 PKGKLTVIFVATKHHVEFLRELLAKANFESTYSYGSLDPTARKINVAKFRNGKAPILLVT 301

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           D+AARG+DIP + +V N+D P   + ++HR+GR  RAGR G A++ +  +++ ++
Sbjct: 302 DVAARGIDIPMLDYVINYDFPAAPKLFVHRVGRVARAGRSGTAYSFIGNDELPYV 356


>gi|254557077|ref|YP_003063494.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
 gi|254046004|gb|ACT62797.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
          Length = 447

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 131/364 (35%), Positives = 203/364 (55%), Gaps = 9/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P ++ A+ D  + KPT +Q K IP++     V G + TG+GKT +F+LPM+  
Sbjct: 5   FEDFKLQPFLMQALTDINFRKPTAVQEKLIPVIAAGRSVIGQSATGSGKTHTFLLPMINQ 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKKLE 120
           L    A  R  + +I  P+RELA Q+    ++  ++    + + L +GG   + Q +KL 
Sbjct: 65  LN---ADERYVQAVITTPSRELAYQIQTAAKQLIQHSPKAIHIGLYVGGTDKQEQIEKLN 121

Query: 121 R-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           R    ++I TPGRILD      L ++    LV+DEAD  LD+GF+  +  I   +P   Q
Sbjct: 122 RHQPQLIIGTPGRILDLMRSQALDVHRATQLVVDEADMTLDLGFLNVVDQIAGRMPADLQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  +L      ++ NP   E+   S  + TI++  ++T +    K +++ +LL
Sbjct: 182 MLVFSATMPQKLTPFLRKYMNNPVMEEIPVESVISPTIDNWLISTKSH--DKNSIIYRLL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     +IF N K+ V  L H L +QG +V  IHG+I  R R +++ + ++   Q +
Sbjct: 240 TIGEPYLV-LIFANTKERVQELTHYLRQQGLTVAMIHGDIQPRERKRVMRDVQQLKYQFV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+DI  V HV N D+PN  E +IHR+GRTGR G  G A TL +  +   + A
Sbjct: 299 VATDLAARGIDIEGVSHVINDDIPNDLEFFIHRVGRTGRNGMAGTAITLYSPGEEAKVSA 358

Query: 360 IEKL 363
           +E +
Sbjct: 359 VEAM 362


>gi|188574399|ref|YP_001911328.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188518851|gb|ACD56796.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 405

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 126/343 (36%), Positives = 185/343 (53%), Gaps = 10/343 (2%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTL---ILEPT 81
           TPIQ+  IP +L   D+   AQTG+GKT ++ LP+L   ++ +A  ++PR L   IL PT
Sbjct: 5   TPIQVAMIPPMLAARDLIVTAQTGSGKTLAYALPLLQ--QRLQAPEQVPRVLGGLILVPT 62

Query: 82  RELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           REL AQVA             L +    GG     Q   L  GAD++I TPGR+LD    
Sbjct: 63  RELVAQVAQTLLSLAAALPRRLKIVAATGGEAINPQLMALRGGADIVIATPGRLLDLVTH 122

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
             L ++ +  LV+DEADR+LD+GF   I  I +L+P  RQ++L SAT    +  +++  L
Sbjct: 123 NALRLSQVRTLVLDEADRLLDLGFGAEIDRILALLPAQRQSVLVSATFPPAIASLAKRRL 182

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
           ++P RI ++     A  I    +A  A   ++  LL+ LLQ +      ++F   +    
Sbjct: 183 RDPLRITIDATPEHAPAIAQRAIAVDA--GQRTQLLRHLLQ-EHAWPQLLVFVASRHTAD 239

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            +   L K G     +HG + Q  R + L  FK+  +Q++VA+DLAARG+DI  +  V N
Sbjct: 240 KVAEKLSKTGIEALPLHGELSQGRRERTLRAFKQADVQVLVATDLAARGIDIDALPAVLN 299

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           +D+P    +Y HRIGRT RAG  G+A + V  E  +    IEK
Sbjct: 300 YDLPRSTVDYTHRIGRTARAGASGEAISFVTAERAQQWRLIEK 342


>gi|299758408|ref|NP_001177648.1| eukaryotic initiation factor 4a [Tribolium castaneum]
          Length = 419

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 215/379 (56%), Gaps = 9/379 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++ HDV   AQ+GTGKTA+F    ++
Sbjct: 47  NFDDMNLKEELLRGIYAYGFEKPSAIQQRAIIPCVKGHDVIAQAQSGTGKTATF---SIS 103

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    +R  + LIL PTRELA Q+       G   +      IGG       +KLE 
Sbjct: 104 ILQQIDTSLRECQALILAPTRELAQQIQKVVIALGDFMSAQCHACIGGTNVREDMRKLET 163

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L  N I++ V+DEAD ML  GF   I ++  ++    Q +
Sbjct: 164 GVHVVVGTPGRVYDMINRRSLRANFIKMFVLDEADEMLSRGFKDQIHDVFRMLNSDVQVI 223

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++  V+++F++NP RI V     T E I+  FV    +  K    L+ L   
Sbjct: 224 LLSATMPADVLDVTKSFMRNPVRILVKKEELTLEGIKQFFVYVEREDWK----LETLCDL 279

Query: 242 QDTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            DT+     +IFCN ++ V  L  ++ K+ F+V A+HG+++QR R  I+  F+ G+ +++
Sbjct: 280 YDTLSITQAVIFCNTRRKVDWLTENMHKRDFTVSAMHGDMEQRERDVIMRQFRTGSSRVL 339

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V +ED + +  
Sbjct: 340 ITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTEEDKRTLKD 399

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    K+D +  +++ L
Sbjct: 400 IEQFYNTKIDEMPMNVADL 418


>gi|30264357|ref|NP_846734.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47529804|ref|YP_021153.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187184|ref|YP_030436.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|49481294|ref|YP_038344.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141217|ref|YP_085615.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus E33L]
 gi|65321660|ref|ZP_00394619.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|118479458|ref|YP_896609.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|165872088|ref|ZP_02216728.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167634514|ref|ZP_02392834.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|167638543|ref|ZP_02396819.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170687333|ref|ZP_02878550.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|190566188|ref|ZP_03019107.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|196034885|ref|ZP_03102292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196041643|ref|ZP_03108935.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|196046361|ref|ZP_03113587.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|218905422|ref|YP_002453256.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|225866267|ref|YP_002751645.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227817061|ref|YP_002817070.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228916918|ref|ZP_04080480.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929329|ref|ZP_04092354.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935605|ref|ZP_04098420.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947999|ref|ZP_04110285.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228987535|ref|ZP_04147654.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229123824|ref|ZP_04253018.1| ATP-dependent RNA helicase yqfR [Bacillus cereus 95/8201]
 gi|229157899|ref|ZP_04285973.1| ATP-dependent RNA helicase yqfR [Bacillus cereus ATCC 4342]
 gi|229186526|ref|ZP_04313688.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BGSC 6E1]
 gi|229604072|ref|YP_002868575.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254684044|ref|ZP_05147904.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254721878|ref|ZP_05183667.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. A1055]
 gi|254736393|ref|ZP_05194099.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254741430|ref|ZP_05199117.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Kruger B]
 gi|254753933|ref|ZP_05205968.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Vollum]
 gi|254757805|ref|ZP_05209832.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Australia 94]
 gi|301055779|ref|YP_003793990.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus anthracis
           CI]
 gi|30259015|gb|AAP28220.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47504952|gb|AAT33628.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49181111|gb|AAT56487.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|49332850|gb|AAT63496.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974686|gb|AAU16236.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           E33L]
 gi|118418683|gb|ABK87102.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis str. Al Hakam]
 gi|164712219|gb|EDR17756.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167513391|gb|EDR88761.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|167529966|gb|EDR92701.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170668528|gb|EDT19274.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|190563107|gb|EDV17073.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|195992424|gb|EDX56385.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196022831|gb|EDX61512.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|196027631|gb|EDX66246.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|218539590|gb|ACK91988.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|225787455|gb|ACO27672.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227005061|gb|ACP14804.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228596957|gb|EEK54615.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BGSC 6E1]
 gi|228625558|gb|EEK82311.1| ATP-dependent RNA helicase yqfR [Bacillus cereus ATCC 4342]
 gi|228659645|gb|EEL15291.1| ATP-dependent RNA helicase yqfR [Bacillus cereus 95/8201]
 gi|228772267|gb|EEM20714.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228811689|gb|EEM58024.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228824045|gb|EEM69862.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830343|gb|EEM75955.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842742|gb|EEM87828.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268480|gb|ACQ50117.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|300377948|gb|ADK06852.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           biovar anthracis str. CI]
          Length = 436

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 214/378 (56%), Gaps = 14/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L  
Sbjct: 6   FTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           +  GR  V++   +I  PTRELA Q+ +   K  K    +  +T   LIGG   +   +K
Sbjct: 66  INPGREEVQL---VITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ- 237
           Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +  ++  K  L+ + 
Sbjct: 183 QMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPS--KHRNKIDLVNKM 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ +  +   ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 241 LLQFKPYL--AVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|149245944|ref|XP_001527442.1| hypothetical protein LELG_02271 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152013518|sp|A5DY34|DRS1_LODEL RecName: Full=ATP-dependent RNA helicase DRS1
 gi|146449836|gb|EDK44092.1| hypothetical protein LELG_02271 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 686

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 133/379 (35%), Positives = 215/379 (56%), Gaps = 17/379 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  ++ ++   G+  PTP+Q  TIP+ L   D+   AQTG+GKTA++++P++  
Sbjct: 198 FQELQLSRPILKSLQQLGFTVPTPVQASTIPIALLGKDIVASAQTGSGKTAAYLIPIIER 257

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L   +      + +IL PTRELA QV D   K G+   NL   + +GG+  + Q ++L+ 
Sbjct: 258 LLYVKNSTST-KAIILTPTRELAIQVHDVGRKLGQFVSNLNFGMAVGGLSLKQQEQQLKT 316

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQ 179
             D++I TPGR++DH  N     + ++++L+IDEADRML+ GF   +  I SL+P   RQ
Sbjct: 317 RPDIVIATPGRLIDHIRNSPSFSVEDVQVLIIDEADRMLEEGFQEELTEILSLIPKQKRQ 376

Query: 180 TLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           TLLFSATM + ++Q + +  L  P ++ ++ P + A  +E  FV    +   K A+L  L
Sbjct: 377 TLLFSATMNNTKIQDLVQLSLNKPIKVSIDPPRTVASKLEQQFVRIRKREELKPAVLYLL 436

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+  +     ++F   K     L   L   G +V  +HG + Q  R+  +  FK   + +
Sbjct: 437 LKKLEG--RTVVFTRTKVEAHKLRIILGLLGLTVAELHGALTQEQRLANVKAFK-NNVNV 493

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +DLAARGLDI  + +V N+D+P   E Y HR+GRT RAGR G + + V  E ++  +
Sbjct: 494 LICTDLAARGLDI-RIEYVINYDMPKTYEIYTHRVGRTARAGRKGTSISFVG-ESMQDRN 551

Query: 359 AIEKLIE-------KKVDW 370
            ++  I+       +K+DW
Sbjct: 552 IVKNAIQFNSRSVARKIDW 570


>gi|71421123|ref|XP_811713.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70876408|gb|EAN89862.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 622

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 203/357 (56%), Gaps = 10/357 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-LT 61
           F+DL     +  + +D GY +PTPIQ    P++L   D+ G+A+TG+GKT +F++P  L 
Sbjct: 72  FSDLVAPDSIHQSFIDLGYKEPTPIQSIAWPILLNSRDLVGVAKTGSGKTMAFMVPAALH 131

Query: 62  ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           I+ +   R    P  L+L PTRELA Q+ +   K  +    +    L GG P   Q + L
Sbjct: 132 IMAQPPVRPGDGPIALVLAPTRELAVQIEEETRKVLRRIPTIATTCLYGGAPKGPQIRTL 191

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  V I TPGR++D        +  +  LV+DEADRMLDMGF   I+ I S +   RQ
Sbjct: 192 RAGVHVAIATPGRLIDLLEMRATNLLRVTYLVLDEADRMLDMGFEIQIRKICSQIRSDRQ 251

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYSKKCALLQQ 237
           TL+FSAT   E++ ++ +F ++  R+ V +    A  +  +H  V    +Y K+   L++
Sbjct: 252 TLMFSATWPQEIRNLAASFQRDFIRVHVGSEDLVANNDVCQHVIVVE--EYDKQ-RRLEE 308

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEK-QGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LQ     +  +IF   K+   +L  SL +  G +V AIHG+ +Q  R  +L  F+    
Sbjct: 309 ILQKLGRQRV-LIFVKTKRTADSLHGSLRRILGGAVMAIHGDKEQSQRDYVLDRFRRDDR 367

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++VA+D+AARGLDI ++  V NFD+P   E+Y+HRIGRTGRAG+ G A++ V+  D
Sbjct: 368 SVLVATDVAARGLDIKNLDVVINFDMPTNIEDYVHRIGRTGRAGQRGDAYSFVSGAD 424


>gi|148700135|gb|EDL32082.1| mCG141508, isoform CRA_a [Mus musculus]
          Length = 624

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 206/353 (58%), Gaps = 17/353 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ+KT   V +  D+   A+TGTGKT SF +P++  
Sbjct: 71  FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 130

Query: 63  LEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ +  +   R P+ L+L PTRELA QVA +F+   +   L+VA   GG  +++Q  ++
Sbjct: 131 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINQI 188

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   G+L ++ +  +V+DE D+MLD+GF   +++I      T  
Sbjct: 189 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 248

Query: 179 ----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
               QTLLFSAT    + KV++ ++++  +++++        A T+EH  +A    +S++
Sbjct: 249 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEH--LAIQCHWSQR 306

Query: 232 CALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A++  +LQ    +    IIFC  KKNV  +  +   +  + C +HG+I Q  R   L  
Sbjct: 307 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKG 365

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           F+EG+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 366 FREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 418


>gi|199561314|ref|NP_001013216.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Rattus norvegicus]
          Length = 734

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 205/353 (58%), Gaps = 17/353 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ+KT   V +  D+   A+TGTGKT SF +P++  
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195

Query: 63  LEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ +  +   R P+ L+L PTRELA QVA +F+   +  N  VA   GG  +++Q  ++
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLN--VACFYGGTSYQSQINQI 253

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-----TSLV 174
             G D+L+ TPGRI DH   G+L ++ +  +V+DE D+MLD+GF   +++I      S  
Sbjct: 254 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKSDS 313

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
               QTLLFSAT    + KV++ ++++  +++++        A T+EH  +A    +S++
Sbjct: 314 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEH--LAIQCHWSQR 371

Query: 232 CALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A++  +LQ    +    IIFC  KKNV  +  +   +  + C +HG+I Q  R   L  
Sbjct: 372 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKG 430

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           F+EG+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 431 FREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 483


>gi|26334341|dbj|BAC30888.1| unnamed protein product [Mus musculus]
          Length = 669

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 206/353 (58%), Gaps = 17/353 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ+KT   V +  D+   A+TGTGKT SF +P++  
Sbjct: 71  FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 130

Query: 63  LEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ +  +   R P+ L+L PTRELA QVA +F+   +   L+VA   GG  +++Q  ++
Sbjct: 131 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINQI 188

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   G+L ++ +  +V+DE D+MLD+GF   +++I      T  
Sbjct: 189 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 248

Query: 179 ----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
               QTLLFSAT    + KV++ ++++  +++++        A T+EH  +A    +S++
Sbjct: 249 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEH--LAIQCHWSQR 306

Query: 232 CALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A++  +LQ    +    IIFC  KKNV  +  +   +  + C +HG+I Q  R   L  
Sbjct: 307 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKG 365

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           F+EG+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 366 FREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 418


>gi|261414880|ref|YP_003248563.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371336|gb|ACX74081.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 463

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 131/420 (31%), Positives = 227/420 (54%), Gaps = 30/420 (7%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ +  P+Q K+IP +L   D+   ++TG+GKT ++ LP+L ++ +       P+ LIL 
Sbjct: 49  GWTELMPVQRKSIPYMLAARDMLVQSKTGSGKTGAYALPLLQVIVRDHP---YPQALILV 105

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTREL  QV + FEK  K   +    + GG+ +E Q K L  G  V++ TPGR++DH  R
Sbjct: 106 PTRELCIQVQEEFEKLSKGTGIKSVAIFGGVSYEPQIKALRSGVHVIVATPGRLMDHIQR 165

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
           G + + +I  LV+DEAD ML MGF P +Q I   +P      ++SAT+   ++ ++  F 
Sbjct: 166 GNVDLLSIRDLVLDEADEMLSMGFYPDMQKIRKYLPKAISCTMYSATIPQTVKSLAREF- 224

Query: 200 QNPKR--IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
           Q P    + ++     A  +EH +        +K ++  ++L+  +  ++ +IFCN K++
Sbjct: 225 QRPGADFLSLSYDKVIANNLEHRYYT--CDVMEKDSMTIKVLEYYNP-ESCMIFCNYKRD 281

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
           V  L   L   GF V A+ G++ Q  R K L+ F++  +++++ +D+AARG+D+  V HV
Sbjct: 282 VSYLEQVLSGYGFEVGALSGDVAQSLREKTLNAFRDKKLKILICTDVAARGIDVDHVTHV 341

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
             +D P   E Y+HR GRT RAGR G   +L+    ++ ID  +  ++  ++++  D   
Sbjct: 342 IVYDHPADHEVYVHRSGRTARAGRSGLCISLITP--VEEIDLRQTAVDFGINFIKMD--- 396

Query: 378 LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQE 437
              PL   +IA+    R            +  +K++  QK+      +E+IS++   ++E
Sbjct: 397 ---PLTNEEIAKKVSERTK-------VRLEEVRKHFGGQKA------TERISRMLPLVKE 440


>gi|239613405|gb|EEQ90392.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
           dermatitidis ER-3]
          Length = 1197

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 127/372 (34%), Positives = 200/372 (53%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  + +  +    Y  PT IQ + IP ++   DV G+A+TG+GKT +F+LPM   
Sbjct: 566 WSQCGLGVQTLDVIRKLNYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRH 625

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R    M  P  LI+ PTRELA Q+    + + K  +L      GG P + Q  +L+
Sbjct: 626 IMDQRPLENMEGPIGLIMTPTRELATQIHKECKPFLKALSLRAVCAYGGAPIKDQIAELK 685

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   V   
Sbjct: 686 RGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRILGNVRPQ 745

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQYSKKCALL 235
           RQT+LFSAT    ++ ++   L  P  I V   S  A  I           ++ +  ALL
Sbjct: 746 RQTVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAPEITQVVEVRNEDTKFVRLLALL 805

Query: 236 QQLL-QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             L    ++     +IF ++++    L   L  +G+   +IHG  DQ  R   + +FK G
Sbjct: 806 GDLYADDKNEDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIDDFKAG 865

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++  
Sbjct: 866 VFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQE 925

Query: 355 KHIDAIEKLIEK 366
           ++   I K +++
Sbjct: 926 RYSVDISKALKQ 937


>gi|5679690|emb|CAB51742.1| RNA helicase-1 [Plasmodium falciparum]
          Length = 386

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 131/359 (36%), Positives = 203/359 (56%), Gaps = 19/359 (5%)

Query: 23  KPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-----PRTLI 77
           KPT IQ++ +P +L   D+ GIA TG+GKT  FVLP++    +   R ++     P  LI
Sbjct: 18  KPTQIQMQGLPSILLGRDIIGIAFTGSGKTIVFVLPLIMKCLEAEIRCKLEEGEGPIGLI 77

Query: 78  LEPTRELAAQVADNFEKYGKNY-------NLTVALLIGGIPFEAQNKKLERGADVLICTP 130
           + P+RELA Q   N  KY   +        L    +IGGI    Q +++++G  +++ TP
Sbjct: 78  ICPSRELATQ-THNIIKYFCEFLYKDNFPTLRSLCMIGGISAYEQGREIQKGIHMIVATP 136

Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190
           GR+ D  N+ ++ +     L  DEADR++D+GF   ++N        RQTLLFSATM  +
Sbjct: 137 GRLNDMLNKKRMTLEQCRYLCFDEADRLIDLGFEEEVRNTLDHFSNQRQTLLFSATMPKK 196

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGII 250
           +Q+ +++ L NP  I +N   + A  ++      Y +   K + L ++LQ   T    +I
Sbjct: 197 IQEFAKSTLVNP--IIINVGRAGAANLDVIQEVEYVKEEFKLSYLLEVLQK--TGPPVLI 252

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           FC  KK+V ++   L  +G +  AIHGN+ Q  R + ++ F+EG   ++V +D+A++GLD
Sbjct: 253 FCENKKDVDDVHEYLLLKGVNAVAIHGNLGQSERQEAINLFREGKKDILVGTDVASKGLD 312

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK--EDIKHIDAIEKLIEKK 367
            P + HV N+D+P   ENY+HRIGRTGR G+ G A T + K  E+   +D    LIE K
Sbjct: 313 FPSIEHVINYDMPKDIENYVHRIGRTGRCGKTGIATTFINKNQEEAILLDLKALLIEAK 371


>gi|194376400|dbj|BAG62959.1| unnamed protein product [Homo sapiens]
          Length = 711

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 205/353 (58%), Gaps = 17/353 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ+KT   V +  D+   A+TGTGKT SF +P++  
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 63  LEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ +  +   R P+ L+L PTRELA QVA +F+   +   L+VA   GG  +++Q   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVAWFYGGTSYQSQINHI 256

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   G+L ++ +  +V+DE D+MLD+GF   +++I      T  
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 179 ----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
               QTLLFSAT    + KV++ ++++  +++++        A T+EH  +A    +S++
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEH--LAIQCHWSQR 374

Query: 232 CALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A++  +LQ    +    IIFC  KKNV  +  +   +  + C +HG+I Q  R   L  
Sbjct: 375 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKG 433

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           F+EG+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 434 FREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 486


>gi|253326818|gb|ACT31323.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Rattus norvegicus]
          Length = 728

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 134/383 (34%), Positives = 210/383 (54%), Gaps = 20/383 (5%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP+VL   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 303 IAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKE 362

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG  F    +++ +G ++L  T
Sbjct: 363 LQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSIRQIVQGCNILCAT 422

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  ++ LV+DEADRMLDMG  P ++ + S         RQTLLFSA
Sbjct: 423 PGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGVGPEMKKLISCPGMPSKEQRQTLLFSA 482

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   +    QYSK+  L++ L    D 
Sbjct: 483 TFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQV-GQYSKREKLVEILRNIGD- 540

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 541 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 599

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA--IEK 362
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+    ++ 
Sbjct: 600 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTESDNHLAQPLVKV 659

Query: 363 LIEKKVD---WLNG-DLSSLNPP 381
           L + + D   WL     SS  PP
Sbjct: 660 LSDAQQDVPAWLEEIAFSSYAPP 682


>gi|261194749|ref|XP_002623779.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
           dermatitidis SLH14081]
 gi|239588317|gb|EEQ70960.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
           dermatitidis SLH14081]
          Length = 1197

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 127/372 (34%), Positives = 200/372 (53%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++  GL  + +  +    Y  PT IQ + IP ++   DV G+A+TG+GKT +F+LPM   
Sbjct: 566 WSQCGLGVQTLDVIRKLNYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRH 625

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R    M  P  LI+ PTRELA Q+    + + K  +L      GG P + Q  +L+
Sbjct: 626 IMDQRPLENMEGPIGLIMTPTRELATQIHKECKPFLKALSLRAVCAYGGAPIKDQIAELK 685

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I   V   
Sbjct: 686 RGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRILGNVRPQ 745

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQYSKKCALL 235
           RQT+LFSAT    ++ ++   L  P  I V   S  A  I           ++ +  ALL
Sbjct: 746 RQTVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAPEITQVVEVRNEDTKFVRLLALL 805

Query: 236 QQLL-QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             L    ++     +IF ++++    L   L  +G+   +IHG  DQ  R   + +FK G
Sbjct: 806 GDLYADDKNEDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIDDFKAG 865

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++  
Sbjct: 866 VFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQE 925

Query: 355 KHIDAIEKLIEK 366
           ++   I K +++
Sbjct: 926 RYSVDISKALKQ 937


>gi|157127270|ref|XP_001654897.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|157127276|ref|XP_001654900.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108872965|gb|EAT37190.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108872968|gb|EAT37193.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 594

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 121/369 (32%), Positives = 200/369 (54%), Gaps = 4/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ +   V+  +   G+ +PTPIQ +  P+ L   ++ G+A+TG+GKT  ++LP + 
Sbjct: 119 EFDEIDMPDYVLNEIEKQGFQRPTPIQAQGWPIALSGLNMVGVAKTGSGKTLGYMLPAIV 178

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +  +K    VR P  L+L PTRELA Q+      +G +  +    L GG     Q   L
Sbjct: 179 HINHQKPDPSVRGPLVLVLAPTRELAQQIQQVATDFGSSSYIRNTCLFGGSSKGPQASDL 238

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +++I TPGR++D    G   +  +  LV+DEADRMLDMGF P I+ I   V   RQ
Sbjct: 239 RRGVEIVIATPGRLIDFLETGTTTLQRVTYLVLDEADRMLDMGFEPQIRKILEQVRPDRQ 298

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL- 238
            L++SAT   E+Q+++ +FL +  +I V +   +A      +V    ++ K   L + L 
Sbjct: 299 ILMWSATWPKEVQRLARDFLGDYVQINVGSLELSANHNITQYVKVIEEHEKNEQLGKLLD 358

Query: 239 -LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L ++      +IF   K+    +   L + G     +HG+  Q+ R + L+ F+     
Sbjct: 359 NLSARGPAGKILIFSTTKRKCDQITSYLRRYGQDAVGMHGDKSQQERERALNRFRNSNSC 418

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  +  V N+D P + E+Y+HRIGRTGR+   G+A+T     + K  
Sbjct: 419 ILVATDVAARGLDVDGIKVVINYDYPQQTEDYVHRIGRTGRSNATGEAYTFFTSNERKMA 478

Query: 358 DAIEKLIEK 366
             +  ++E+
Sbjct: 479 KELVAILEE 487


>gi|255730427|ref|XP_002550138.1| eukaryotic initiation factor 4A [Candida tropicalis MYA-3404]
 gi|240132095|gb|EER31653.1| eukaryotic initiation factor 4A [Candida tropicalis MYA-3404]
          Length = 397

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/377 (36%), Positives = 203/377 (53%), Gaps = 7/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L P +V  +   GY  P+ IQ + I  + +  DV   AQ+GTGKTA+F +  L  
Sbjct: 25  FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQR 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++     +  + LIL PTRELA Q+ +     G   N+TV   IGG       +    G
Sbjct: 85  IDENE---KSTQALILAPTRELALQIKNVITAIGLYLNVTVHASIGGTSMSDDIEAFRSG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ D   R     + +++ ++DEAD ML  GF   I NI  L+P T Q +L
Sbjct: 142 VQIVVGTPGRVYDMIERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQVVL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQLLQS 241
            SATM  E+ +V+  F+ NP RI V     T E I+  ++     +Y   C  L  L  S
Sbjct: 202 LSATMPQEVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVELEEYKFDC--LCDLYDS 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN +  V  L + L +Q F+V AIH ++ Q  R  I+  F+ G+ +++++
Sbjct: 260 I-SVTQAVIFCNTRTKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILIS 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V   D+  +  IE
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGTMREIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    +++ +  D+ SL
Sbjct: 379 KFYSTQIEEMPADIGSL 395


>gi|311895413|dbj|BAJ27821.1| putative ATP-dependent RNA helicase [Kitasatospora setae KM-6054]
          Length = 594

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 190/362 (52%), Gaps = 17/362 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L L   ++  +   G  +P PIQ  T+P  L   DV G  +TG+GKT +F LP+L  
Sbjct: 88  FAELELPAGLMRELGAQGVTEPFPIQAATLPDALAGRDVLGRGRTGSGKTLAFGLPLLVR 147

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV +    Y    NL +  ++GG+    Q+ ++ RG
Sbjct: 148 TAGKRATARRPLALVLVPTRELAQQVTEALAPYAGVLNLRITTVVGGMSITRQSNQVRRG 207

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +VL+ TPGR+ D   RG + + ++ I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 208 TEVLVATPGRLDDLIQRGDVFLEDVAITVLDEADQMADMGFLPQVVKLLEQVADGGQRML 267

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV----ATYAQYSKKCALLQQL 238
           FSAT+   + ++   FL +P    V+  +    T++H  +    A  A+ + + A     
Sbjct: 268 FSATLDRNVDRLVNRFLTDPVTHSVDPSAGAVTTMDHHLLQLEPADKAETTARIA----- 322

Query: 239 LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                  ++G  I+F + K     L   L   G    A+HG   Q  R ++L  F+EG +
Sbjct: 323 ------ARDGRVIMFVHTKHGADRLAKQLRAHGVVAAALHGGKSQPQRNRVLDQFREGEV 376

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             ++A+++AARG+ I  +  V N D P   ++Y+HR GRT RAG  G   TLV  E  + 
Sbjct: 377 TALIATNVAARGIHIDGLDLVVNVDPPIDHKDYLHRGGRTARAGESGTVVTLVLPEQRRE 436

Query: 357 ID 358
           ++
Sbjct: 437 VN 438


>gi|157693014|ref|YP_001487476.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
 gi|157681772|gb|ABV62916.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
          Length = 439

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 134/383 (34%), Positives = 207/383 (54%), Gaps = 17/383 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ A+ + G+ +PT IQ + IP VL+   V G +QTGTGKT +++LP++  
Sbjct: 6   FTTYELKSFIIDAIHELGFYEPTDIQKRIIPAVLKGESVIGQSQTGTGKTHAYLLPLIHS 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN----LTVALLIGGIPFEAQNKK 118
           ++  +  V++   +I  PTRELA Q+    +   KN +    +   L IGG   +   +K
Sbjct: 66  IDPSKEHVQV---VITAPTRELANQIFKEAQTILKNASPEEEIKAKLYIGGTDKQKSIQK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+    +++ TPGRI D  +   L +     LVIDEAD MLDMGF+  +  I S +P   
Sbjct: 123 LKNQPHLVVGTPGRIADLIHEQALNVYKATSLVIDEADLMLDMGFLEDVDRIGSQMPEQL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+   + ++ NPK   V     TAE I+H  V +  +   K  LL ++
Sbjct: 183 QMLVFSATIPEKLKPFLKKYMDNPKYAHVEPKRITAENIQHILVPS--KQRDKLKLLHEM 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +      GIIF N K  V  +   L+++G  V  +HG +  R R K++    +     
Sbjct: 241 VTNVQPYL-GIIFANTKTTVDEIASFLQEKGMKVGVLHGGLTPRERKKVMKQIDDLEFTY 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARG+DI  V HV N+++P+  + Y+HR+GRT RAG  G A T+    D   + 
Sbjct: 300 IVASDLAARGIDIKGVSHVINYELPSDLDFYVHRVGRTARAGSSGIAMTIYELADEDALI 359

Query: 359 AIEKL---IEKKV----DWLNGD 374
            IEK+    E K     +W + D
Sbjct: 360 QIEKMGVVFENKTIVHGEWRDAD 382


>gi|296194573|ref|XP_002745045.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 1
           [Callithrix jacchus]
          Length = 724

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 203/368 (55%), Gaps = 14/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 288 LTFEEANLCQTLSNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 347

Query: 61  T-ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G    R      P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 348 AHMMRDGVTASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGH 407

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S  
Sbjct: 408 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 467

Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  +E+Q+++  FL+ N   + V         ++   V    Q+S
Sbjct: 468 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQT-VLQVGQFS 526

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  L++ L    D  +  ++F   KK    +   L ++  S  +IHG+ +QR R + L 
Sbjct: 527 KREKLVEILRNIGD--ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALG 584

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +  
Sbjct: 585 DFRSGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFF 644

Query: 350 AKEDIKHI 357
             E   H+
Sbjct: 645 DPESDNHL 652


>gi|242047398|ref|XP_002461445.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
 gi|241924822|gb|EER97966.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
          Length = 602

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 124/367 (33%), Positives = 205/367 (55%), Gaps = 7/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++ A L +SP++V  +   G  K  PIQ   +   +Q  D+ G A+TGTGKT +F +P++
Sbjct: 86  LEIARLWISPRIVEKLAARGITKLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIM 145

Query: 61  TIL---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             +    +     R P  ++L PTRELA QV   F +   +  L    + GG+P   Q +
Sbjct: 146 DKILSHNEKNGNGRNPLAIVLAPTRELARQVEKEFRE---SAPLDTLCVYGGVPINQQMR 202

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+++ TPGRI+D   RG L ++ I+ +V+DEAD+ML +GF   ++ I   +P  
Sbjct: 203 VLNYGVDIVVGTPGRIIDLLRRGVLNLSQIQFVVLDEADQMLAVGFDEDVEVIMEQLPQN 262

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ++LFSATM   ++K+S  +L +P  I++   S           +  +    K ++L  
Sbjct: 263 RQSMLFSATMPSWIRKISNKYLNDPVIIDLVGDSDQKLPEGISLYSIASDNFGKQSILGP 322

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L++        I+F   K++   L + + +  +   A+HG+I Q  R + LS F++G   
Sbjct: 323 LIKEHANGGKCIVFTQTKRDADRLAYVMGRS-YPCQALHGDISQNQRERTLSGFRDGRFN 381

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIP+V  V ++++PN +E ++HR GRT RAG+ G A  +   E  + +
Sbjct: 382 ILVATDVAARGLDIPNVDLVVHYEIPNTSELFVHRSGRTARAGKKGSAILIYTYEQTRAV 441

Query: 358 DAIEKLI 364
             IE+ I
Sbjct: 442 RVIEQDI 448


>gi|95007096|emb|CAJ20316.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii RH]
          Length = 574

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 132/380 (34%), Positives = 199/380 (52%), Gaps = 15/380 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+ P ++          P+PIQ+ ++P  L+  +VCG+A TG+GKT  +  P+L  
Sbjct: 134 FASLGVPPALIRTAASLHIFHPSPIQVLSLPHTLRGKNVCGLAPTGSGKTLGYCWPLLQR 193

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + +G     M   L+L P RELA QV D F  YG    + V LL+GG     + K L++ 
Sbjct: 194 IGRGDGHAFM--GLVLLPARELAIQVLDQFRIYGVQLGVRVCLLLGGRDLVEEGKLLDQC 251

Query: 123 ADVLICTPGRILDHFNRGKLLMNN----IEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
             ++I TPGR+ DH     L M      +++LV+DEADR+L   F   ++ I S VP + 
Sbjct: 252 PHIVIATPGRMSDHVQNDPLRMKKRLSLVDVLVLDEADRLLSDEFEDDLKTILSCVPTSS 311

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRI----EVNTPSSTAETIEHCFVATYAQYSKK 231
             RQTLLFSAT++  L  +   F  +   +      + P+    +  + FV T  Q    
Sbjct: 312 QGRQTLLFSATVSPALLALQRRFGDDAMPLVDAHPTDQPALPNLSHFYMFVPTRMQPIYL 371

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL+    S      GI+F    +    +C +LE    S   +H  ++QR R+  L  F
Sbjct: 372 LYLLEH--TSPFCSDRGIVFAGSVRQTQQICTALEILKQSATPLHSLMEQRKRVACLEKF 429

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +  T +L++ +D+A RGLD+P V  V N  VP +A++Y+HR GRT RAGR G A T V  
Sbjct: 430 RSETSRLLICTDVAGRGLDLPRVEFVINMQVPGKAQDYVHRTGRTARAGRKGVALTFVDP 489

Query: 352 EDIKHIDAIEKLIEKKVDWL 371
           + ++ +  IE LI  ++  L
Sbjct: 490 KSVRAVHRIEALINTQLQPL 509


>gi|302915819|ref|XP_003051720.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732659|gb|EEU46007.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 397

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 214/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L  +++  V   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F    +++
Sbjct: 26  FDDMNLKSELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATF---SISV 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    V+  + LIL PTRELA Q+       G   N+     IGG       K L+ G
Sbjct: 83  LQKIDTNVKACQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVREDMKALQDG 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 143 PQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 203 LSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 261

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A+
Sbjct: 262 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIAT 320

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  ED++ +  IE+
Sbjct: 321 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTAEDVRMMREIEQ 380

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 381 FYSTQIEEMPMNVADL 396


>gi|53804102|ref|YP_114024.1| DEAD-box ATP dependent DNA helicase [Methylococcus capsulatus str.
           Bath]
 gi|53757863|gb|AAU92154.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Methylococcus
           capsulatus str. Bath]
          Length = 499

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 111/293 (37%), Positives = 175/293 (59%), Gaps = 4/293 (1%)

Query: 77  ILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           +L PTRELA QVA+ F+ Y ++  +  +  + GG   +AQ + L RG  V++ TPGR++D
Sbjct: 1   MLAPTRELALQVAEAFQSYARHLPDFHILPIYGGQSMDAQLRHLRRGVHVIVGTPGRVID 60

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
           H  R  L ++ +  LV+DEAD ML MGFI  ++ I    P  RQ  LFSATM + +++V+
Sbjct: 61  HLRRKSLNLDGLRTLVLDEADEMLRMGFIEDVEWILEHTPPERQIALFSATMPEAIRRVA 120

Query: 196 ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
           +  L++PK  ++   ++T E I   +       + K   L ++L+ +D     IIF   K
Sbjct: 121 KRHLRHPKEAKIEAKTATVEAITQRY--WLGSGAHKLDALTRILEVED-FDAMIIFVRTK 177

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
                L   LE +G+S  A++G++ Q  R K +   K+ T+ ++VA+D+AARGLD+  + 
Sbjct: 178 VLTEELAEKLEARGYSAAALNGDMSQALREKAVDRLKKNTLDILVATDVAARGLDVERIS 237

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           HV N+D+P   E+Y+HRIGRTGRAGR G+A   V   + + + AIEK   +++
Sbjct: 238 HVVNYDIPYDTESYVHRIGRTGRAGRKGQAILFVTPREKRMLSAIEKATRQRI 290


>gi|86130411|ref|ZP_01049011.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
 gi|85819086|gb|EAQ40245.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
          Length = 428

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 127/363 (34%), Positives = 206/363 (56%), Gaps = 10/363 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIP-LVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F  LG++  +  A+     V+PT IQ + IP L+  + DV  +AQTGTGKT +F +P+L 
Sbjct: 5   FTALGVTNGIQEALAALDIVQPTDIQQQAIPALLTSKKDVVALAQTGTGKTLAFGVPLLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           ++++    V+    +IL PTREL  Q+  N   Y      ++ A+  GGIP +   ++L+
Sbjct: 65  LIDRTNPTVQ---AVILVPTRELGQQIYSNIVAYAAQLPEVSAAVFYGGIPVKENIERLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             A ++I TPGR++D   R  + ++    LV+DEAD M+       I  I   +P  R+T
Sbjct: 122 EPAQIVIATPGRLIDLMERKAINISQANYLVLDEADEMVS-ALKNSIDVIVETMPNNRRT 180

Query: 181 LLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LFSATM   ++++ +N+L +NP  I     +  +  I H +V    +  +K  +L   L
Sbjct: 181 FLFSATMPGTVKQLVQNYLSKNPLEITAERANLASHKITHDYVVV--EPIEKLDVLMHFL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+   + GIIFC  K  V  L  +L    FS  A+HG++ Q  R +++  F+EG I ++
Sbjct: 239 NSK-IGERGIIFCKTKAAVNKLAKNLAINKFSSGALHGSLSQAIRDRMMGQFREGHIDIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+D+ ++ +V N+ +P   + Y+HR GRT RAG+ G A T++ +E++  I  
Sbjct: 298 VATDLAARGIDVKEISYVVNYHLPEFYDMYVHRTGRTARAGKTGYALTVLQQEEVAEIPE 357

Query: 360 IEK 362
            E+
Sbjct: 358 FEE 360


>gi|71651136|ref|XP_814251.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70879209|gb|EAN92400.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 861

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/374 (34%), Positives = 201/374 (53%), Gaps = 13/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   V+  VL  GY  PTPIQ K IP ++Q  DV  +A+TG+GKTA+F++PML +
Sbjct: 67  FQSLGLEKPVLDGVLRLGYNVPTPIQRKAIPPMIQGSDVVAMARTGSGKTAAFLVPMLNL 126

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  ++    R L+L PTREL+ Q+     +  K  +L  A L+GG   E Q + L   
Sbjct: 127 L-KSHSKTVGIRGLVLAPTRELSLQILRFGIQLNKFLDLRFAALVGGNSLEQQFELLGSN 185

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+L       L ++ ++ LV+DEADR+ ++G  P I  +   VP   Q  L
Sbjct: 186 PDIVVATPGRLLHIMEEASLKLSMVKCLVLDEADRLFELGLQPQIVAVMQKVPDACQRAL 245

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ-- 240
           FSATM   L + +   L NP  I ++     ++ ++    A + +  +K A L  LL+  
Sbjct: 246 FSATMPSVLAEFTSAGLHNPVVIRLDAEMKLSDKLKQS--AFFVRNDEKVAALIVLLKKV 303

Query: 241 --------SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                   S  T +  +IF   K +V  L   +E    S  A+HG +DQ +R   +  F 
Sbjct: 304 IGVAAGDTSDGTAQQALIFVESKFHVDYLQMIMEAYLISCSAVHGQMDQEARRNAVQAFS 363

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                +M+ +D+AARGLD+P + +V NF  P+  + ++HR+GR  RAGR G A++ +  E
Sbjct: 364 RRETHVMIVTDVAARGLDLPLLDNVVNFSFPSTPKLFVHRVGRVARAGRSGAAYSFLTFE 423

Query: 353 DIKHIDAIEKLIEK 366
           D  +   +   I++
Sbjct: 424 DFPYYVDLMAFIDR 437


>gi|302326490|gb|ADL25691.1| putative ATP-dependent RNA helicase DeaD [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 483

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 131/420 (31%), Positives = 227/420 (54%), Gaps = 30/420 (7%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ +  P+Q K+IP +L   D+   ++TG+GKT ++ LP+L ++ +       P+ LIL 
Sbjct: 69  GWTELMPVQRKSIPYMLAARDMLVQSKTGSGKTGAYALPLLQVIVRDHP---YPQALILV 125

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTREL  QV + FEK  K   +    + GG+ +E Q K L  G  V++ TPGR++DH  R
Sbjct: 126 PTRELCIQVQEEFEKLSKGTGIKSVAIFGGVSYEPQIKALRSGVHVIVATPGRLMDHIQR 185

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
           G + + +I  LV+DEAD ML MGF P +Q I   +P      ++SAT+   ++ ++  F 
Sbjct: 186 GNVDLLSIRDLVLDEADEMLSMGFYPDMQKIRKYLPKAISCTMYSATIPQTVKSLAREF- 244

Query: 200 QNPKR--IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
           Q P    + ++     A  +EH +        +K ++  ++L+  +  ++ +IFCN K++
Sbjct: 245 QRPGADFLSLSYDKVIANNLEHRYYT--CDVMEKDSMTIKVLEYYNP-ESCMIFCNYKRD 301

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
           V  L   L   GF V A+ G++ Q  R K L+ F++  +++++ +D+AARG+D+  V HV
Sbjct: 302 VSYLEQVLSGYGFEVGALSGDVAQSLREKTLNAFRDKKLKILICTDVAARGIDVDHVTHV 361

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
             +D P   E Y+HR GRT RAGR G   +L+    ++ ID  +  ++  ++++  D   
Sbjct: 362 IVYDHPADHEVYVHRSGRTARAGRSGLCISLITP--VEEIDLRQTAVDFGINFIKMD--- 416

Query: 378 LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQE 437
              PL   +IA+    R            +  +K++  QK+      +E+IS++   ++E
Sbjct: 417 ---PLTNEEIAKKVSERTK-------VRLEEVRKHFGGQKA------TERISRMLPLVKE 460


>gi|319427373|gb|ADV55447.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 432

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 140/390 (35%), Positives = 215/390 (55%), Gaps = 15/390 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGL+  ++ A L A    PT +Q   IP +L   DV  +AQTG+GKT +F LP+L
Sbjct: 20  LTFTKLGLNSALIKA-LPAMLQCPTLVQQLAIPAILAGRDVLALAQTGSGKTLAFGLPLL 78

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNK 117
            ++LE+        + L+L PTRELA QV    +   +  +  + +  L GG+  + Q  
Sbjct: 79  QSVLEQ------QAQALVLVPTRELAQQVTLALQAVAQPLSGAMKIQTLCGGVDIDNQLI 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L     +L+ TPGRILD   +  + +++I+ LV+DEADR+L+MGF P +Q + +L+P  
Sbjct: 133 ELAERPQILVATPGRILDLCKQSHITLDSIKHLVLDEADRLLEMGFWPDVQKLIALMPKH 192

Query: 178 RQTLLFSATMTDELQKVSENFLQN-PKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           +QTLLFSAT+ + L  ++   L N P R++ +  +S    IE        + SK  AL+ 
Sbjct: 193 KQTLLFSATLPEALDTLASQLLINDPLRVQAHKANSVVPHIEEQLYLVN-KGSKTQALIA 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L Q Q      ++F + + +   +   L K G  V A+HG  DQ  R + L++FK   I
Sbjct: 252 LLKQYQ--WPQVLVFISARDDADAVAKRLAKAGMKVAALHGEKDQTVRSQTLADFKAKRI 309

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+DL ARG+ I  +  V N D+P  A  Y+HRIGRT RAG  G A +LV   ++  
Sbjct: 310 QILVATDLMARGIHIDALPVVVNLDLPMSAPVYVHRIGRTARAGTKGLAISLVCHGEMAT 369

Query: 357 IDAIEKLIEKKVDW-LNGDLSSLNPPLEKI 385
           +  I  L E+ +   L  D    + P E++
Sbjct: 370 LTTIRGLTERALPLTLLADFPVTDKPSEQV 399


>gi|270007520|gb|EFA03968.1| hypothetical protein TcasGA2_TC014113 [Tribolium castaneum]
          Length = 482

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 215/379 (56%), Gaps = 9/379 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++ HDV   AQ+GTGKTA+F    ++
Sbjct: 110 NFDDMNLKEELLRGIYAYGFEKPSAIQQRAIIPCVKGHDVIAQAQSGTGKTATF---SIS 166

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    +R  + LIL PTRELA Q+       G   +      IGG       +KLE 
Sbjct: 167 ILQQIDTSLRECQALILAPTRELAQQIQKVVIALGDFMSAQCHACIGGTNVREDMRKLET 226

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L  N I++ V+DEAD ML  GF   I ++  ++    Q +
Sbjct: 227 GVHVVVGTPGRVYDMINRRSLRANFIKMFVLDEADEMLSRGFKDQIHDVFRMLNSDVQVI 286

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++  V+++F++NP RI V     T E I+  FV    +  K    L+ L   
Sbjct: 287 LLSATMPADVLDVTKSFMRNPVRILVKKEELTLEGIKQFFVYVEREDWK----LETLCDL 342

Query: 242 QDTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            DT+     +IFCN ++ V  L  ++ K+ F+V A+HG+++QR R  I+  F+ G+ +++
Sbjct: 343 YDTLSITQAVIFCNTRRKVDWLTENMHKRDFTVSAMHGDMEQRERDVIMRQFRTGSSRVL 402

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V +ED + +  
Sbjct: 403 ITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTEEDKRTLKD 462

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    K+D +  +++ L
Sbjct: 463 IEQFYNTKIDEMPMNVADL 481


>gi|156057455|ref|XP_001594651.1| eukaryotic initiation factor 4A [Sclerotinia sclerotiorum 1980]
 gi|160395529|sp|A7EGL7|IF4A_SCLS1 RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|154702244|gb|EDO01983.1| eukaryotic initiation factor 4A [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 398

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 214/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P+++  V   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F    +++
Sbjct: 27  FDTMNLKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATF---SISV 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    V+  + LIL PTRELA Q+       G   N+     IGG       K L+ G
Sbjct: 84  LQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFMNVECHACIGGTSVRDDMKALQDG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 144 PQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 204 LSATMPQDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKE-DWKLDTLSDLYETV 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A+
Sbjct: 263 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIAT 321

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  ED++ +  IE+
Sbjct: 322 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTAEDVRMMREIEQ 381

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 382 FYSTQIEEMPMNVADL 397


>gi|297204692|ref|ZP_06922089.1| DEAD-box RNA helicase [Streptomyces sviceus ATCC 29083]
 gi|297148758|gb|EDY54797.2| DEAD-box RNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 486

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 122/347 (35%), Positives = 185/347 (53%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +   ++ A+   G   P PIQ  T+P  L   D  G  +TG+GKT +F L +L  
Sbjct: 60  FADLDMPEPLLAALTAQGVSVPFPIQSATLPNTLAGRDALGRGRTGSGKTLAFGLALLAR 119

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y ++  L +A ++GG+    Q   L  G
Sbjct: 120 TAGQRAEPRQPLALVLVPTRELAQQVTDALTPYARSVQLRLATVVGGMSIGRQANALRSG 179

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D  +RG+  +N + I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 180 AEVVVATPGRLKDLIDRGECRLNQVAITVLDEADQMADMGFMPQVTALLDQVRPEGQRML 239

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++   +L +P    V+  +    T+EH  +  +   + K     Q+   +
Sbjct: 240 FSATLDRNVDRLVRRYLTDPVVHSVDPSAGAVSTMEHHVL--HVHGADKHWTTTQIAARE 297

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F + K  V  L   L   G    A+HG   Q  R + L+ FK G + ++VA+
Sbjct: 298 GRV---IMFLDTKHAVDRLTQDLLNSGVRAAALHGGKSQPQRTRTLTQFKTGHVTVLVAT 354

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 355 NVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLV 401


>gi|259145266|emb|CAY78530.1| Fal1p [Saccharomyces cerevisiae EC1118]
 gi|323309503|gb|EGA62714.1| Fal1p [Saccharomyces cerevisiae FostersO]
 gi|323334268|gb|EGA75650.1| Fal1p [Saccharomyces cerevisiae AWRI796]
          Length = 399

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 124/383 (32%), Positives = 209/383 (54%), Gaps = 14/383 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+  P+ IQ + I  ++   DV   AQ+GTGKTA+F + +L  
Sbjct: 25  FESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQA 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER- 121
           ++    R +  + LIL PTRELA+Q+    +  G   N+    + GG   +   KK+++ 
Sbjct: 85  ID---LRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKH 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD--MGFIPYIQNITSLVPFTRQ 179
           G   +  TPGR+LD   R  L   N+++LV+DEAD +L   +GF   I +I + +P   Q
Sbjct: 142 GCQAVSGTPGRVLDMIKRQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQ 201

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT---YAQYSKKCALLQ 236
            ++ SATM  ++ +V+  F+ +P +I V     + E I+   V       ++   C +  
Sbjct: 202 VVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYD 261

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L     T+   +IFCN KK V  L   L +  F+V ++HG++ Q  R K++++F+ G  
Sbjct: 262 SL-----TITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHS 316

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   + K D+  
Sbjct: 317 RVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK 376

Query: 357 IDAIEKLIEKKVDWLNGDLSSLN 379
           +  IEK    K++ +  + + L+
Sbjct: 377 LREIEKFYSIKINPMPANFAELS 399


>gi|123504635|ref|XP_001328793.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121911741|gb|EAY16570.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 515

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 206/369 (55%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ A+    +  PTP+Q KTIP+ LQ  DVC  A TG+GKTA+F++P +  
Sbjct: 18  FEELGLSHSIIRALHKMNFEIPTPVQNKTIPIALQGRDVCASAVTGSGKTAAFLIPTVER 77

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKLER 121
           L + ++     R +IL PTRELAAQ      +  +   LT  LL GG    + + ++L  
Sbjct: 78  LLRSKSTEAQTRAVILSPTRELAAQTYSVLSQIIQFTPLTALLLTGGSSNVKEEEERLLE 137

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D L+CTPGRI+DH  N     + N+ +LV+DE+DR+L  GF   I+ +   +P T Q+
Sbjct: 138 YPDFLVCTPGRIIDHIKNCEGFTLENVLVLVLDESDRLLQEGFYSQIEEVHKSLPETTQS 197

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L +ATM   + +++E  L+ P RI+++     A+ +   F+    + ++   L+     
Sbjct: 198 ILVTATMNSSVSRLAEMSLKKPVRIDLDDVFKVAKGLTQEFIRCTKE-TRDATLVA--CC 254

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+   K  +IF N KK V NL    +  G  V  + G++ Q  R +  S F  G  + ++
Sbjct: 255 SRLCTKKTLIFGNTKKIVHNLYLLFKALGMPVAELQGDMTQLKRYEAHSLFAGGQAEFLI 314

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + +V N+++P     Y+HR+GRT R    G+   L+ ++D + + +I
Sbjct: 315 ATDVAARGLDIKGIENVINYNMPRSLTFYVHRVGRTARINTEGRTIALITEDDREMMKSI 374

Query: 361 EKLIEKKVD 369
              IEK  +
Sbjct: 375 ---IEKSAE 380


>gi|308080376|ref|NP_001183357.1| hypothetical protein LOC100501766 [Zea mays]
 gi|223949963|gb|ACN29065.1| unknown [Zea mays]
 gi|238010976|gb|ACR36523.1| unknown [Zea mays]
          Length = 483

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 121/332 (36%), Positives = 193/332 (58%), Gaps = 11/332 (3%)

Query: 36  LQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR---MPRTLILEPTRELAAQVADNF 92
           +Q  D+ G A+TGTGKT +F +P++  + +   + +    P  ++L PTRELA QV   F
Sbjct: 1   MQGRDMVGRAKTGTGKTLAFGIPIMDAIIRHNEKYKPGKFPLAIVLAPTRELAKQVEREF 60

Query: 93  EKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVI 152
                   L V    GG P   Q +KL  G DV+I TPGR++D   RG L +  I  +V+
Sbjct: 61  LDSSPLETLCV---YGGTPIMQQIRKLNYGVDVVIGTPGRVIDLLKRGSLSLAEIRFVVL 117

Query: 153 DEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV--NTP 210
           DEAD+ML +GF   ++ I   VP  RQTL+FSATM   ++K+++ +L NP  +++     
Sbjct: 118 DEADQMLSVGFDLDVETILERVPPQRQTLMFSATMPTWIRKLTQKYLNNPVTVDLVGEDD 177

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
              AE I    +A  ++  +K A+L +L++        I+F   K++   L H++ +  F
Sbjct: 178 QKLAEGI--SLLAVSSENREKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSHNMSRS-F 234

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
              A+HG+I Q  R + L+ F++G   +++A+D+AARGLDIP+V  V +F++PN +E ++
Sbjct: 235 QCEALHGDISQSQRERTLAGFRDGRFNILIATDVAARGLDIPNVDLVIHFELPNSSELFV 294

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           HR GRTGRAG+ G A  +   +  + +  IE+
Sbjct: 295 HRSGRTGRAGKKGTAIVMYNYDQSRAVRVIER 326


>gi|240994916|ref|XP_002404560.1| DEAD box protein abstrakt, putative [Ixodes scapularis]
 gi|215491582|gb|EEC01223.1| DEAD box protein abstrakt, putative [Ixodes scapularis]
          Length = 568

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 206/375 (54%), Gaps = 26/375 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++ ++   G  +PTPIQ++ +P VL   D+ GIA TG+GKT  FVLP+L  
Sbjct: 129 FKEMKFPRTILASLRRKGITQPTPIQMQGLPAVLSGRDMIGIAFTGSGKTLVFVLPLLMF 188

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVAD-------NFEKYGKNYNLTVALLIGGI 110
             +   R+       P  L++ P+RELA Q  +         E+ G   +L   L IGG 
Sbjct: 189 CLEQEKRLPFVQNEGPYGLVVCPSRELAKQTFEIVSFFVRALEEAGYP-SLRGCLCIGGT 247

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q + + RG  V++ TPGR++D  ++  + ++    L +DEADRM+DMGF   ++ I
Sbjct: 248 SVREQLEIVRRGVHVMVATPGRLMDMLDKKMVNLDMCRYLCLDEADRMIDMGFEEDVRTI 307

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q  + + L  P  I VN   + A +++   V    +Y K
Sbjct: 308 FSFFKGQRQTLLFSATMPKKIQNFARSALVKP--ITVNVGRAGAASLD---VVQEVEYVK 362

Query: 231 KCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A +  LL++ Q T    +IF  +K++V  +   L  +G    AIHG  DQ  R + + 
Sbjct: 363 QEAKIVHLLETLQKTAPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERSRAVD 422

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+     ++VA+D+A++GLD  ++ HV N+D+P   ENY+HRIGRTGR+GR G A T +
Sbjct: 423 AFRRAEKDVLVATDVASKGLDFENIQHVINYDMPEDIENYVHRIGRTGRSGRMGIATTFI 482

Query: 350 AKE-------DIKHI 357
            K        D+KH+
Sbjct: 483 NKACDESVLLDMKHL 497


>gi|29351650|gb|AAH49261.1| Ddx10 protein [Mus musculus]
          Length = 891

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 212/376 (56%), Gaps = 20/376 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P+L  
Sbjct: 87  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 146

Query: 63  LEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     R++   T     LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +
Sbjct: 147 L----YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE 202

Query: 118 KLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++    ++L+CTPGR+L H +        N+++LV+DEADR+LDMGF   +  I   +P 
Sbjct: 203 RIN-NINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPK 261

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCAL 234
            RQTLLFSAT T  ++ ++   L++P+ + V+  +  ST  T+E  ++    +  +K ++
Sbjct: 262 KRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYI--ICELHQKISV 319

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL--EKQGFSVCAIHGNIDQRSRMKILSNFK 292
           L   L+S    K  I+F +  K V  L       + G S+ A+HG   Q  RM++ + F 
Sbjct: 320 LFSFLRSH-LKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFV 378

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                ++ A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   
Sbjct: 379 RKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPS 438

Query: 353 DIKHIDAIEKLIEKKV 368
           + + +  +++L++KKV
Sbjct: 439 EEQGM--VQQLLQKKV 452


>gi|237841945|ref|XP_002370270.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211967934|gb|EEB03130.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|221482742|gb|EEE21080.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
 gi|221503065|gb|EEE28771.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 698

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 132/380 (34%), Positives = 199/380 (52%), Gaps = 15/380 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+ P ++          P+PIQ+ ++P  L+  +VCG+A TG+GKT  +  P+L  
Sbjct: 258 FASLGVPPALIRTAASLHIFHPSPIQVLSLPHTLRGKNVCGLAPTGSGKTLGYCWPLLQR 317

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + +G     M   L+L P RELA QV D F  YG    + V LL+GG     + K L++ 
Sbjct: 318 IGRGDGHAFM--GLVLLPARELAIQVLDQFRIYGVQLGVRVCLLLGGRDLVEEGKLLDQC 375

Query: 123 ADVLICTPGRILDHFNRGKLLMNN----IEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
             ++I TPGR+ DH     L M      +++LV+DEADR+L   F   ++ I S VP + 
Sbjct: 376 PHIVIATPGRMSDHVQNDPLRMKKRLSLVDVLVLDEADRLLSDEFEDDLKTILSCVPTSS 435

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRI----EVNTPSSTAETIEHCFVATYAQYSKK 231
             RQTLLFSAT++  L  +   F  +   +      + P+    +  + FV T  Q    
Sbjct: 436 QGRQTLLFSATVSPALLALQRRFGDDAMPLVDAHPTDQPALPNLSHFYMFVPTRMQPIYL 495

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL+    S      GI+F    +    +C +LE    S   +H  ++QR R+  L  F
Sbjct: 496 LYLLEH--TSPFCSDRGIVFAGSVRQTQQICTALEILKQSATPLHSLMEQRKRVACLEKF 553

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +  T +L++ +D+A RGLD+P V  V N  VP +A++Y+HR GRT RAGR G A T V  
Sbjct: 554 RSETSRLLICTDVAGRGLDLPRVEFVINMQVPGKAQDYVHRTGRTARAGRKGVALTFVDP 613

Query: 352 EDIKHIDAIEKLIEKKVDWL 371
           + ++ +  IE LI  ++  L
Sbjct: 614 KSVRAVHRIEALINTQLQPL 633


>gi|28302109|gb|AAL87139.2|AF479820_1 DEAD box RNA helicase Vasa [Cyprinus carpio]
          Length = 691

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 145/428 (33%), Positives = 229/428 (53%), Gaps = 34/428 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 253 MTFDEAGLCESLRKNVTKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 312

Query: 61  T-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
              +  G A      ++ P  +I+ PTREL  Q+     K+     +   ++ GGI    
Sbjct: 313 QRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGY 372

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM--GFIPYIQNITS 172
             +++ +G +VL  TPGR+ D   RGK+ ++ +  LV+DEADRMLDM  GF P ++ +  
Sbjct: 373 TIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMDMGFEPDMRKLVG 432

Query: 173 LVPF----TRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQ 227
                    RQTL+FSAT  +++Q+++ +FL+ +   + V         +E   V   + 
Sbjct: 433 SPGMPSKEDRQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQVTS- 491

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
            +K+  LL+ LL+S    +  ++F   K++   +   L ++  S  +IHG+ +QR R K 
Sbjct: 492 -TKRDQLLE-LLRSTGNERT-MVFVETKRSADFIATFLCQEKMSTTSIHGDREQREREKA 548

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           LS+F+ G   ++VA+ +AARGLDI  V HV NFD+P+  + Y+HRIGRTGR G  G+A +
Sbjct: 549 LSDFRTGQCPVLVATSVAARGLDIEQVQHVVNFDLPSSIDEYVHRIGRTGRCGNIGRAVS 608

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
               E      +   L    V  L+G    +   LE+I  + H            +TGF+
Sbjct: 609 FFNPE------SDTPLARSLVKVLSGAQQEVPKWLEEIAFSAHG-----------TTGFN 651

Query: 408 RRKKNYSS 415
            R K ++S
Sbjct: 652 PRGKVFAS 659


>gi|254581160|ref|XP_002496565.1| ZYRO0D03058p [Zygosaccharomyces rouxii]
 gi|238939457|emb|CAR27632.1| ZYRO0D03058p [Zygosaccharomyces rouxii]
          Length = 395

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 129/376 (34%), Positives = 212/376 (56%), Gaps = 6/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L P+++  V   G+ +P+ IQ + I  +++ HDV   AQ+GTGKT +F +  L  
Sbjct: 24  FDDMNLKPELLRGVFGYGFEEPSAIQQRAILPIIEAHDVLAQAQSGTGKTGTFSIAAL-- 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            ++    V+ P+ L+L PTRELA Q+         + ++ V   IGG  F+   + L R 
Sbjct: 82  -QRIDVNVKAPQALMLAPTRELALQIQKVVIALAFHMDIKVHACIGGTSFQEDAEGL-RD 139

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A +++ TPGR+ D+  R K   ++I++ ++DEAD ML  GF   I  I +L+P T Q +L
Sbjct: 140 AQIVVGTPGRVFDNIQRRKFKTDHIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVL 199

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM +++ +V+  F++NP RI V     T E I+  ++    +  K   L    L   
Sbjct: 200 LSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIQQFYINVEEELYKYDCLTD--LYDS 257

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            ++   +IFCN ++ V  L   L    F+V +I+ ++ Q+ R  I+  F+ G+ ++++++
Sbjct: 258 ISVTQAVIFCNTRRKVEELTQKLRADSFTVSSIYSDLPQQERDVIMKEFRSGSSRILIST 317

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  ED+  +  +EK
Sbjct: 318 DLLARGIDVQQVSLVINYDLPTNKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRDLEK 377

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ L  +++ L
Sbjct: 378 FYSTQIEELPANIAEL 393


>gi|114603672|ref|XP_001145017.1| PREDICTED: DEAD-box protein abstrakt isoform 2 [Pan troglodytes]
          Length = 625

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 132/364 (36%), Positives = 198/364 (54%), Gaps = 20/364 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 183 FKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 242

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 243 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMS 302

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 303 VKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 362

Query: 172 SLVPF---TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
           S  P     RQTLLFSATM  ++Q  +++ L  P  + +N   + A +++   V    +Y
Sbjct: 363 SCPPLPQGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEY 417

Query: 229 SKKCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
            K+ A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K 
Sbjct: 418 VKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKA 477

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           +  F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T
Sbjct: 478 IEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATT 537

Query: 348 LVAK 351
            + K
Sbjct: 538 FINK 541


>gi|94501739|ref|ZP_01308253.1| probable ATP-dependent RNA helicase [Oceanobacter sp. RED65]
 gi|94426139|gb|EAT11133.1| probable ATP-dependent RNA helicase [Oceanobacter sp. RED65]
          Length = 449

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 200/366 (54%), Gaps = 7/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L  +++  +   G+ K T +Q +TIP  L++ D+   A+TG+GKTA+FV+PML  
Sbjct: 2   FQSFSLDQRILKGIEALGFTKATDVQQQTIPEALKQQDLMVCARTGSGKTAAFVVPMLQH 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +A     R LIL PTRELA Q+    +   K   +   ++ GG  F+ Q     + 
Sbjct: 62  LLTHKAPNSGTRALILVPTRELAKQLLKQCQALAKFTGIQSGMITGGQEFKFQAALFRKN 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--QT 180
            +++I TPGR++DH  + K LM ++E  ++DEADRMLDMGF   +  I +        QT
Sbjct: 122 PEIIIATPGRLIDHLKQKKDLMEDVEYFILDEADRMLDMGFEEDVLTIANACSGKAKPQT 181

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALLQQL 238
           LLFSAT+    L+ V +    +P+ I V++       IE H  +A   ++ ++  +L  L
Sbjct: 182 LLFSATLQQRGLKHVIKQIQNDPEEIVVDSFRGEHSNIEQHYMLADDDKHKQR--ILTWL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S +  +  IIF N K+      H L      V  +HG++ Q  R  +++  + G  ++
Sbjct: 240 L-SNEEYRQAIIFTNTKEKTEQTYHFLSYHNVEVGYLHGDMTQDERNHVMTQMRNGRFKV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  +  V NFD+    ++Y+HRIGRTGRA   G A +L+   +     
Sbjct: 299 LVATDVAARGLDIQSIDLVINFDMARSGDDYVHRIGRTGRAEASGSAISLIDHTEWNLKA 358

Query: 359 AIEKLI 364
           AIE+ +
Sbjct: 359 AIERYL 364


>gi|253575601|ref|ZP_04852937.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251844939|gb|EES72951.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 472

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 117/353 (33%), Positives = 205/353 (58%), Gaps = 6/353 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LG+  ++  A+LD G  +P+P+Q + IP  L+  D+   +QTGTGKT +++LP+L
Sbjct: 4   ITFAGLGIGEQLTAALLDYGISEPSPVQAECIPAALEGRDILAQSQTGTGKTLAYLLPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +  G   ++    LIL PT+ELA Q+    EKYG+   +    LIGG   + Q +KL+
Sbjct: 64  QRINPGEKTLQ---GLILAPTQELAMQILREAEKYGEPLGIRSQALIGGAAIKRQLEKLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRI +     KL ++ +  +V+DE D+M  +G    +++I       RQ 
Sbjct: 121 LHPQLVVGTPGRIREILALRKLKLHTLLTVVVDEVDQMFQLGGTADVEHILRGTLRDRQL 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +  SAT+  +++ ++   ++ P  I +     T++T+EH +  + A+   K  +L+++++
Sbjct: 181 MFLSATINPDIRALAAKEMKEPLEIGIEPEQRTSKTVEHLYFVSEAR--DKIDMLRRIVR 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F N    +  +   +   G S  A++G+ D+ +R   L  F+EG I+++V
Sbjct: 239 HFEPERT-IVFINNTDQIAEVEAKMNYVGLSAGALYGDADKTARSLTLQRFREGKIRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           ASD+AARGLDI ++  V N D P  +E+Y+HR+GRTGR GR G A ++V  ++
Sbjct: 298 ASDVAARGLDIENLALVVNLDPPIDSEHYVHRVGRTGRMGRKGLAVSIVTPQE 350


>gi|154340597|ref|XP_001566255.1| mitochondrial DEAD box protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134063574|emb|CAM39757.1| putative mitochondrial DEAD box protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 544

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 147/428 (34%), Positives = 215/428 (50%), Gaps = 31/428 (7%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA+L  +P+ +   L A  Y   T IQ  TIPL+   HDV G+A TG+GKT +F +P L 
Sbjct: 94  FAELRDAPRWLAEGLRALKYPSTTDIQKFTIPLLADGHDVIGLAPTGSGKTVAFAVPALA 153

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             +  R     P  L+L PTREL  Q    F+  G    + V    GG P + Q + L  
Sbjct: 154 AFK--RNPDGTPSVLVLAPTRELVQQTTKVFQSLGCG-QVRVCEAYGGAPRDLQARCLRN 210

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--Q 179
           G D L+  PGR+ D  + G+L + N+  LV DEADR+LDMGF  ++  I   +      Q
Sbjct: 211 GCDALVACPGRLKDFLDSGELSIRNLSFLVFDEADRLLDMGFQVHLDEIMGHLDSGSHPQ 270

Query: 180 TLLFSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHC-----FVATYAQYSKKCA 233
           T+++SAT  + +Q+++  +L N +  I   T  +  +  EH      F +T  +  +K  
Sbjct: 271 TMMWSATWPESVQEMARKYLSNDRLLIRAGTAGTGLQVNEHIKQELIFCSTLTERIEKLG 330

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVN----LCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            L +     D     IIF  ++ +  +      H L      V  IHG + QR R K++S
Sbjct: 331 SLVEDGTIDDNSDKLIIFVERQTDTEDTARAFSHRLGIDARYVGTIHGGLSQRQRDKVMS 390

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK   I+L+VA+D+A+RGLDIPDV  V NF  P   ++Y HRIGRTGRAGR G A+T +
Sbjct: 391 MFKANHIRLLVATDVASRGLDIPDVTCVVNFQAPKNIDSYCHRIGRTGRAGRTGTAYTFL 450

Query: 350 AKEDIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR----KNNPIPQKST 404
            + D    +D ++ L   +V            P E + +A+ +  R    +         
Sbjct: 451 GQGDGGLAVDLVDYLTRCRV----------TVPAELMQLAKRHQDRLQQQQGRSRRADRG 500

Query: 405 GFDRRKKN 412
           GF RR+ N
Sbjct: 501 GFSRREGN 508


>gi|28378872|ref|NP_785764.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
 gi|300768022|ref|ZP_07077928.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|28271709|emb|CAD64615.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
 gi|300494371|gb|EFK29533.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 447

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/364 (35%), Positives = 203/364 (55%), Gaps = 9/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P ++ A+ D  + KPT +Q K IP++     V G + TG+GKT +F+LPM+  
Sbjct: 5   FEDFKLQPFLMQALTDINFRKPTAVQEKLIPVIAAGRSVIGQSATGSGKTHTFLLPMINQ 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKKLE 120
           L    A  R  + +I  P+RELA Q+    ++  ++    + + L +GG   + Q +KL 
Sbjct: 65  LN---ADERYVQAVITTPSRELAYQIQTAAKQLIQHSPKAIHIGLYVGGTDKQEQIEKLN 121

Query: 121 R-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           R    ++I TPGRILD      L ++    LV+DEAD  LD+GF+  +  I   +P   Q
Sbjct: 122 RHQPQLIIGTPGRILDLMRSQALDVHRATQLVVDEADMTLDLGFLNVVDQIAGRMPADLQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  +L      ++ NP   E+   S  + TI++  ++T +    K +++ +LL
Sbjct: 182 MLVFSATMPQKLTPFLRKYMNNPVMEEIPVESVISPTIDNWLISTKSH--DKNSIIYRLL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     ++F N K+ V  L H L +QG +V  IHG+I  R R +++ + ++   Q +
Sbjct: 240 TIGEPYLV-LVFANTKERVQELTHYLRQQGLTVAMIHGDIQPRERKRVMRDVQQLKYQFV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+DI  V HV N D+PN  E +IHR+GRTGR G  G A TL +  +   + A
Sbjct: 299 VATDLAARGIDIEGVSHVINDDIPNDLEFFIHRVGRTGRNGMAGTAITLYSPGEEAKVSA 358

Query: 360 IEKL 363
           +E +
Sbjct: 359 VEAM 362


>gi|242096928|ref|XP_002438954.1| hypothetical protein SORBIDRAFT_10g028940 [Sorghum bicolor]
 gi|241917177|gb|EER90321.1| hypothetical protein SORBIDRAFT_10g028940 [Sorghum bicolor]
          Length = 414

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 200/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 43  FDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G    +    L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 103 LDYGLVECQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASG 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 160 VHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKIQVGV 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 220 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLA 279

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 280 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  
Sbjct: 335 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFD 394

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     ++ L  +++ L
Sbjct: 395 IQKFYNVVIEELPANVADL 413


>gi|195355988|ref|XP_002044465.1| GM11962 [Drosophila sechellia]
 gi|194131630|gb|EDW53672.1| GM11962 [Drosophila sechellia]
          Length = 946

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 125/378 (33%), Positives = 206/378 (54%), Gaps = 14/378 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   V+  +   G+ KPT IQ +  P+ L   D+ GIAQTG+GKT +++LP +
Sbjct: 238 VSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAI 297

Query: 61  TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQN 116
             +      +R   P  L+L PTRELA Q+      YG      +    + GG     Q 
Sbjct: 298 VHIGNQPPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQA 357

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+RG +V+I TPGR++D        +     LV+DEADRMLDMGF P I+ I   +  
Sbjct: 358 RDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 417

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKK 231
            RQ +++SAT   E+Q ++ +FL +  +I + + + +A     + +E C      Q  + 
Sbjct: 418 DRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQ--RL 475

Query: 232 CALLQQLLQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
             LL ++   + +  NG   I+F   K  V ++   +  +G++  +IHG+  Q  R  +L
Sbjct: 476 VCLLNEISPIKKSGSNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVL 535

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +F+ G   +++A+D+A+RGLD+ D+ +V N+D PN +ENY+HRIGRTGR  + G A+T 
Sbjct: 536 KDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTF 595

Query: 349 VAKEDIKHIDAIEKLIEK 366
              ++ K    +  ++E+
Sbjct: 596 FTPDNAKQARELISVLEE 613


>gi|188529677|gb|ACD62525.1| Vasa [Silurus meridionalis]
          Length = 662

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 131/363 (36%), Positives = 208/363 (57%), Gaps = 14/363 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 224 MTFEEAQLCETLNRNVAKSGYVKPTPVQKHGIPIIFAGRDLMACAQTGSGKTAAFLLPIL 283

Query: 61  T-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++  G A      V+ P  +I+ PTREL +Q+     K+     +   ++ GG     
Sbjct: 284 QQLMNDGVATSKFSEVQEPEVIIVAPTRELISQIYLEARKFAYGTCVRPVVVYGGTSTGF 343

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ---NIT 171
             +++ +G +VL  TPGR+LD   RG++ ++ +  LV+DEADRMLDMGF P ++   N  
Sbjct: 344 TIREVLKGCNVLCGTPGRLLDIIGRGEVGLSKVRYLVLDEADRMLDMGFEPTMRKLVNSP 403

Query: 172 SLVP-FTRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYS 229
            + P   RQTL+FSAT  +++Q+++ +FL+ +   + V         IE   +    +YS
Sbjct: 404 GMPPKEERQTLMFSATYPEDIQRLASDFLKVDYLFLAVGVVGGACSDIEQNIIQV-TRYS 462

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  LL+ LL++  T +  ++F   K++   +   L ++     +IHG+ +QR R K L 
Sbjct: 463 KREQLLE-LLKATGTERT-MVFVETKRSADFIATFLCQEKVPTTSIHGDREQREREKALG 520

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G   ++VA+ +AARGLDI  V +V NFD+P   + Y+HRIGRTGR G  G+A +  
Sbjct: 521 DFRTGQCPVLVATSVAARGLDIEQVQNVINFDLPKYIDEYVHRIGRTGRCGNTGRAVSFF 580

Query: 350 AKE 352
             E
Sbjct: 581 DPE 583


>gi|157875861|ref|XP_001686302.1| ATP-dependent RNA helicase [Leishmania major strain Friedlin]
 gi|68129376|emb|CAJ07917.1| putative ATP-dependent RNA helicase [Leishmania major strain
           Friedlin]
          Length = 803

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 126/359 (35%), Positives = 197/359 (54%), Gaps = 6/359 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ A+L  G+  PTPIQ K IP +LQ +DV  +A+TG+GKTA+F++PML  
Sbjct: 24  FQSFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLNT 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  A++   R L+L PTREL+ Q+  N     K  +L  A L+GG   + Q + L   
Sbjct: 84  L-KAHAKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDSMDQQFELLASN 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR+L       L + ++  LV+DEADR+ ++G  P I  I   +P + Q  L
Sbjct: 143 PDVVVATPGRLLHIMEEASLHLTSVRCLVLDEADRLFELGLQPQIGAIMQKLPESCQRAL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCALLQQLLQ 240
           FSATM   L + +   L NP  I +++    ++ ++     V    + +    LL+++L 
Sbjct: 203 FSATMPTVLAEFTSAGLHNPVVIRLDSEMKLSDQLKQSAFLVRNDEKVAALIVLLKRVLH 262

Query: 241 SQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             +   N    +IF   K +V  L   L     S  A+HG +DQ +R   + +F +    
Sbjct: 263 VGEAAANSAQALIFSESKFHVEFLQMILTHYSISTSAVHGQMDQEARRLAVRSFAKRETS 322

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +MV +D+AARGLD+P + +V NF  P   + ++HR+GR  RAGR G A++++  ED  +
Sbjct: 323 VMVVTDVAARGLDLPLLDNVVNFSFPFNPKLFVHRVGRVARAGRSGTAYSIMTFEDFPY 381


>gi|323349512|gb|EGA83736.1| Fal1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 399

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 124/383 (32%), Positives = 209/383 (54%), Gaps = 14/383 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+  P+ IQ + I  ++   DV   AQ+GTGKTA+F + +L  
Sbjct: 25  FESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQA 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER- 121
           ++    R +  + LIL PTRELA+Q+    +  G   N+    + GG   +   KK+++ 
Sbjct: 85  ID---LRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKH 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD--MGFIPYIQNITSLVPFTRQ 179
           G   +  TPGR+LD   R  L   N+++LV+DEAD +L   +GF   I +I + +P   Q
Sbjct: 142 GCQAVSGTPGRVLDMIKRQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQ 201

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT---YAQYSKKCALLQ 236
            ++ SATM  ++ +V+  F+ +P +I V     + E I+   V       ++   C +  
Sbjct: 202 VVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYD 261

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L     T+   +IFCN KK V  L   L +  F+V ++HG++ Q  R K++++F+ G  
Sbjct: 262 SL-----TITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHS 316

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   + K D+  
Sbjct: 317 RVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK 376

Query: 357 IDAIEKLIEKKVDWLNGDLSSLN 379
           +  IEK    K++ +  + + L+
Sbjct: 377 LREIEKFYSIKINPMPANFAELS 399


>gi|223590193|sp|A5DLE0|DBP8_PICGU RecName: Full=ATP-dependent RNA helicase DBP8
 gi|190347673|gb|EDK39993.2| hypothetical protein PGUG_04091 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 433

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/389 (35%), Positives = 215/389 (55%), Gaps = 26/389 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLG+S  ++ A+       PT IQ + IP +L   D  G A+TG+GKT +F  PM+
Sbjct: 1   MSFKDLGVSKWLLEALAAMKIRSPTSIQAECIPQILAGRDCIGGAKTGSGKTIAFAAPMM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T   +    +     L+L PTRELA Q+A+ F   G + N+ VA+++GG     Q  +++
Sbjct: 61  TKWSEDPFGIY---GLVLTPTRELALQIAEQFLALGASMNIKVAVVVGGEDMVKQALEIQ 117

Query: 121 RGADVLICTPGRILDH-FNRGKLL---MNNIEILVIDEADRMLDMGFIPYIQNITSLVP- 175
           +    +I TPGR+ DH  N G      +  I+ LV+DEADR+L   F   ++    ++P 
Sbjct: 118 KSPHFIIATPGRLADHILNSGDDTVGGLKRIKFLVLDEADRLLSNSFGSDLERCFKILPD 177

Query: 176 -FTRQTLLFSATMTDELQKVSENFLQNPKRI----------EVNTPSSTAETIEHCFVAT 224
              RQTLLF+AT+TD ++ + +  +   K+           +V  P++   TI + FV +
Sbjct: 178 ASKRQTLLFTATVTDAVRALKDKPVPEGKKPVFIHEIVSKDQVAIPATL--TISYVFVPS 235

Query: 225 YAQYSKKCALLQQLLQSQDTMK-NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
           Y     K A L  +L S    K + I+F N+      L  +L K    V ++H  + Q  
Sbjct: 236 YV----KEAYLHNILVSPKYEKASAIVFVNRTYTAEILRRTLRKLDIRVASLHSEMPQSE 291

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L  F+ G  ++++A+D+A+RGLDIP+V  V N D+P   ++YIHR+GRT RAG+ G
Sbjct: 292 RTNSLHRFRAGAARVLIATDVASRGLDIPNVELVVNQDIPADPDDYIHRVGRTARAGKKG 351

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
            + ++V+++D++ I AIE  I KK+D L 
Sbjct: 352 GSVSIVSEKDVERILAIENHINKKMDLLE 380


>gi|146099084|ref|XP_001468551.1| ATP-dependent RNA helicase [Leishmania infantum]
 gi|134072919|emb|CAM71636.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
          Length = 803

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/365 (35%), Positives = 201/365 (55%), Gaps = 7/365 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ A+L  G+  PTPIQ K IP +LQ +DV  +A+TG+GKTA+F++PML  
Sbjct: 24  FQSFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLNT 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  A++   R L+L PTREL+ Q+  N     K  +L  A L+GG   + Q + L   
Sbjct: 84  L-KAHAKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDSMDQQFELLASN 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR+L       L + ++  LV+DEADR+ ++G  P I  I   +P + Q  L
Sbjct: 143 PDVVVATPGRLLHIMEEASLHLTSVRCLVLDEADRLFELGLQPQIGAIMQKLPESCQRAL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCALLQQLLQ 240
           FSATM   L + +   L NP  I +++    ++ ++     V    + +    LL+++L 
Sbjct: 203 FSATMPTVLAEFTSAGLHNPVVIRLDSEMKLSDQLKQSAFLVRNDEKVAALIVLLKRVLH 262

Query: 241 SQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             +   N    +IF   K +V  L   L     S  A+HG +DQ +R   + +F +    
Sbjct: 263 VGEAAANNAQALIFVESKFHVEFLQMILTHYSISTSAVHGQMDQEARRLAVRSFAKRETS 322

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK-H 356
           +MV +D+AARGLD+P + +V NF  P   + ++HR+GR  RAGR G A++++  ED   +
Sbjct: 323 VMVVTDVAARGLDLPLLDNVVNFSFPFNPKLFVHRVGRVARAGRSGTAYSIMTFEDFPYY 382

Query: 357 IDAIE 361
           ID ++
Sbjct: 383 IDLLQ 387


>gi|25809056|gb|AAN74636.1| DEAD box RNA helicase [Pisum sativum]
          Length = 413

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 198/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    + HDV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGHDVIQQAQSGTGKTATFCSGVLQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     V   + L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 102 LDYN---VTQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVFDMLRRQSLHPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V KED   +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVNKEDEAMLQD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     V+ L  +++ L
Sbjct: 394 IQKFYNVLVEELPSNVAEL 412


>gi|308181071|ref|YP_003925199.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308046562|gb|ADN99105.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 447

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/364 (35%), Positives = 203/364 (55%), Gaps = 9/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P ++ A+ D  + KPT +Q K IP++     V G + TG+GKT +F+LPM+  
Sbjct: 5   FEDFKLQPFLMQALTDINFRKPTAVQEKLIPVIAAGRSVIGQSATGSGKTHTFLLPMINQ 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKKLE 120
           L    A  R  + +I  P+RELA Q+    ++  ++    + + L +GG   + Q +KL 
Sbjct: 65  LN---ADERYVQAVITTPSRELAYQIQTAAKQLIQHSPKAIHIGLYVGGTDKQEQIEKLN 121

Query: 121 R-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           R    ++I TPGRILD      L ++    LV+DEAD  LD+GF+  +  I   +P   Q
Sbjct: 122 RHQPQLIIGTPGRILDLMRSQALDVHRATQLVVDEADMTLDLGFLNVVDQIAGRMPADLQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  +L      ++ NP   E+   S  + TI++  ++T +    K +++ +LL
Sbjct: 182 MLVFSATMPQKLTPFLRKYMNNPVMEEIPVESVISPTIDNWLISTKSH--DKNSIIYRLL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     +IF N K+ V  L H L +QG ++  IHG+I  R R +++ + ++   Q +
Sbjct: 240 TIGEPYLV-LIFANTKERVQELTHYLRQQGLTIAMIHGDIQPRERKRVMRDVQQLKYQFV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+DI  V HV N D+PN  E +IHR+GRTGR G  G A TL +  +   + A
Sbjct: 299 VATDLAARGIDIEGVSHVINDDIPNDLEFFIHRVGRTGRNGMAGTAITLYSPGEEAKVSA 358

Query: 360 IEKL 363
           +E +
Sbjct: 359 VEAM 362


>gi|226183|prf||1413329A gene vasa
          Length = 660

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 122/361 (33%), Positives = 207/361 (57%), Gaps = 9/361 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++  V  +G+  PTPIQ  +IP++    D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 247 FTSADLRDIIIDNVNKSGFKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSK 306

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L +    + +  P+ +I+ PTRELA Q+ +   K+     L + ++ GG  F  QN+ + 
Sbjct: 307 LLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECIT 366

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TR 178
           RG  V+I TPGR+LD  +R  +   +   +V+DEADRMLDMGF   ++ I + V      
Sbjct: 367 RGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEH 426

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT  +E+Q+++  FL+  + + +         ++   +    +Y+K+  L++ L
Sbjct: 427 QTLMFSATFPEEIQRMAGEFLK-LRFVAIGIVGGRCSDVKQT-IYEVNKYAKRSKLIEIL 484

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +  D     I+F   K+    L   L ++ F   +I G+  Q  R + L +FK G++++
Sbjct: 485 SEQADGT---IVFVETKRGADFLASFLSEKEFPTTSIRGDRLQSQREQALRDFKNGSMKV 541

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+ +A+RGLDI ++ HV N+D+P++ ++Y+HRIGRTG  G  G+A +    E  + I 
Sbjct: 542 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGCVGNWGRAQSFFDPEKDRAIA 601

Query: 359 A 359
           A
Sbjct: 602 A 602


>gi|114046504|ref|YP_737054.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113887946|gb|ABI41997.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 451

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 148/437 (33%), Positives = 233/437 (53%), Gaps = 26/437 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+LG++   +C+VL A    PT +Q   IP +L   DV  ++QTG+GKT +F LP+L
Sbjct: 17  LTFAELGVN-AALCSVLPAALKHPTRVQQLAIPAILAGRDVLALSQTGSGKTLAFGLPLL 75

Query: 61  TIL-------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVAL 105
             +             E   A       L+L PTRELA QV           + +L + L
Sbjct: 76  QAIHQQLQQQVVLAGAESVSASASNALALVLVPTRELAQQVTIALHALASKLSSSLNIQL 135

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           L GGI  E Q  +L     +++ TPGR+LD   +  + +++I+ LV+DEADR+L+MGF P
Sbjct: 136 LCGGIAQEDQLAELAAKPQLVVATPGRLLDLCTQSHISLDSIKYLVLDEADRLLEMGFWP 195

Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVAT 224
            +Q + +++P  +QTLLFSAT+ + L  ++   L  NP R+E +T ++ A  IE      
Sbjct: 196 DVQKLMAMMPKRKQTLLFSATLPEALGTLAGKLLTNNPLRVEASTRNAVAADIEERLYLV 255

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
             + SK  AL+  L Q Q      ++F + + +   +   L K G +  A+HG  +Q  R
Sbjct: 256 N-KGSKAQALIALLKQYQ--WPQVLVFISARDDADAIAKRLVKAGINAAALHGEKEQTVR 312

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + L++FK   IQ++VA+DL ARG+ +  +  V N D+P  A  Y+HRIGRT RAG  G 
Sbjct: 313 SQTLADFKANRIQVVVATDLMARGIHVDALPVVINLDLPMSAPVYVHRIGRTARAGAKGL 372

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLN-GDLSSLNPPLEKI--DIAQHNHARKNNPIPQ 401
           A +LV   ++  + AI  L  +++   +  D    + P E+   D  ++  A K  P  +
Sbjct: 373 AISLVCHGEMPSLIAIRNLTARELSLASLADFPVTDKPSERTREDGTENKVAPKRPPRDK 432

Query: 402 KSTGFDRRKKNYSSQKS 418
           ++   +RR  N  S K+
Sbjct: 433 QA---NRRSLNKHSIKA 446


>gi|328865226|gb|EGG13612.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 414

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/362 (35%), Positives = 193/362 (53%), Gaps = 9/362 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DL L   ++  + + GYVKP+PIQ K IP+ L   D+   A+ GTGKTASF++P L 
Sbjct: 41  EFDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGKDIMARAKNGTGKTASFLIPAL- 99

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             EK        + LIL PTRELA Q +   ++ GK  N+ V    GG   +    +L  
Sbjct: 100 --EKTDPTKDYIQVLILVPTRELALQTSQVCKELGKYMNVKVMATTGGTSLKDDIMRLYE 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD   +    ++N   +++DEAD++L   F P I+ + + +P  RQ L
Sbjct: 158 TVHILVATPGRVLDLAQKNVANLSNTHTIIMDEADKLLSQDFQPLIEQLINFLPPQRQIL 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT    ++   +N+LQ  K  E+N     T + +   +   +    +K   L  L  
Sbjct: 218 LFSATFPLTVKTFKDNYLQ--KAYEINLMEELTLKGVTQYYA--FVDERQKIHCLNTLF- 272

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 273 SKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQAHRNRVFHDFRNGHCRNLV 332

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +SDL  RG+DI DV  V NFD P  +E Y+HRIGR+GR G  G A  L+  ED   +  I
Sbjct: 333 SSDLFTRGIDIQDVNVVINFDFPKHSETYLHRIGRSGRFGHLGLAINLITYEDRFSLHKI 392

Query: 361 EK 362
           E+
Sbjct: 393 EQ 394


>gi|189491668|ref|NP_084212.2| probable ATP-dependent RNA helicase DDX10 [Mus musculus]
 gi|76364168|sp|Q80Y44|DDX10_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX10; AltName:
           Full=DEAD box protein 10
          Length = 875

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 212/376 (56%), Gaps = 20/376 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P+L  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 63  LEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     R++   T     LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +
Sbjct: 131 L----YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE 186

Query: 118 KLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++    ++L+CTPGR+L H +        N+++LV+DEADR+LDMGF   +  I   +P 
Sbjct: 187 RIN-NINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPK 245

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCAL 234
            RQTLLFSAT T  ++ ++   L++P+ + V+  +  ST  T+E  ++    +  +K ++
Sbjct: 246 KRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYI--ICELHQKISV 303

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL--EKQGFSVCAIHGNIDQRSRMKILSNFK 292
           L   L+S    K  I+F +  K V  L       + G S+ A+HG   Q  RM++ + F 
Sbjct: 304 LFSFLRSH-LKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFV 362

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                ++ A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   
Sbjct: 363 RKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPS 422

Query: 353 DIKHIDAIEKLIEKKV 368
           + + +  +++L++KKV
Sbjct: 423 EEQGM--VQQLLQKKV 436


>gi|254775428|ref|ZP_05216944.1| ATP-dependent RNA helicase [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 362

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 127/363 (34%), Positives = 195/363 (53%), Gaps = 10/363 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+  ++V A+   G   P PIQ +T+P  L   DV G  +TG+GKT +F +P++  
Sbjct: 7   FADLGVPARIVDALTARGITSPFPIQAETLPDTLAGRDVLGRGKTGSGKTLAFSIPLVGR 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G  R   P  L+L PTRELA Q+    E       L V+ + GG+    Q   L+ G
Sbjct: 67  LSTGNRRPARPTGLVLAPTRELATQITATLEPLAAAAGLRVSTIFGGVSQHRQVTALKAG 126

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++  PGR+ D   +  + +  + + VIDEAD M D+GF+P +  I +  P   Q LL
Sbjct: 127 VDIVVACPGRLEDLMRQRLITLEAVRVTVIDEADHMADLGFLPGVTRILAATPNDGQRLL 186

Query: 183 FSATMTDELQKVSENFLQNP---KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           FSAT+ + + K+   FL++       E N+P S  E   H F    AQ  K+  L+ +L 
Sbjct: 187 FSATLDNGVDKLVTRFLRDAVLHSVDEANSPVS--EMTHHVFHVDSAQAKKE--LVHRL- 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +  T +  I+F   K     L   L + G     +HGN+ Q +R + L+ F  G+ +++
Sbjct: 242 -ASGTGRR-ILFLRTKHQARKLARQLTESGVPSVDLHGNLSQPARERNLAMFAAGSARVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+ + +V  V + D P+  ++Y+HR GRT RAG  G   T+V  E  +H  A
Sbjct: 300 VATDIAARGVHVDEVELVVHIDPPSEHKSYLHRSGRTARAGSAGDVVTVVLPEQREHTRA 359

Query: 360 IEK 362
           + +
Sbjct: 360 LMR 362


>gi|261417664|ref|YP_003251346.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC61]
 gi|319767530|ref|YP_004133031.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC52]
 gi|261374121|gb|ACX76864.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC61]
 gi|317112396|gb|ADU94888.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC52]
          Length = 436

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 135/384 (35%), Positives = 206/384 (53%), Gaps = 12/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ A+    + KPT IQ + IP  L+   + G +QTGTGKT +++LP++  
Sbjct: 6   FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           ++  RA V+    +I  PTRELA Q+     K  K    +  +    LIGG   +   +K
Sbjct: 66  IKPERAEVQ---AVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L     ++I TPGRI D      L ++   ILV+DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+   + +++NP  + VN   +  E IEH  +    +  +K  LL  +
Sbjct: 183 QMLVFSATIPEKLKPFLKKYMENPTFVHVNPKQTANENIEHVLIPLRGR--EKTKLLHDV 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S +     I+F N +K    +   L +QG  V  +HG++  R R K+++  ++   Q 
Sbjct: 241 LLSYNPYL-AIVFVNTRKMADEVADRLAEQGLKVGVLHGDLTPRERRKMMNLIRDLEFQY 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N+++P+  + YIHR GRT RAG  G A T+    D   I 
Sbjct: 300 VVATDLAARGIDIEGVSHVINYELPDDLQFYIHRAGRTARAGYSGIAATIYEPSDQDAIA 359

Query: 359 AIEKLIEKKV--DWLNGDLSSLNP 380
            +EK+    V  D + G+   L P
Sbjct: 360 RLEKMGISFVHRDLVRGEWKELPP 383


>gi|146415030|ref|XP_001483485.1| hypothetical protein PGUG_04214 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 914

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 132/413 (31%), Positives = 216/413 (52%), Gaps = 49/413 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  GLS  ++  +   G+ +PTPIQ KTIPLV++  DV G+A+TG+GKTA+FVLP++  
Sbjct: 101 FASFGLSKFLLKNIAKKGFKQPTPIQRKTIPLVMESRDVVGMARTGSGKTAAFVLPVVEK 160

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +V + R +IL P RELA Q     +++ K  +L   +LIGG   E Q   +   
Sbjct: 161 LKSHSPKVGV-RAVILSPLRELALQTFKQVKEFTKGTDLRSIVLIGGDSLEDQFLSMMTN 219

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR L       L +  +E +V DEADR+ +MGF   +  +   +P +RQ+LL
Sbjct: 220 PDILVATPGRFLHLKVEMNLDLKTVEYIVFDEADRLFEMGFAEQLNELLVALPPSRQSLL 279

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ-- 240
           FSAT+   L   ++  L NP  + ++  +  ++ ++  F  T  +  +   LL  LL+  
Sbjct: 280 FSATLPRSLVDFAKAGLSNPVLVRLDAETKISDQLQMAFFTT-KRTERDANLLYILLEVI 338

Query: 241 -----SQDTMK----------------------------------------NGIIFCNQK 255
                +QD +K                                        + I+F   K
Sbjct: 339 KMPLATQDQIKKLKELEEGADDDDSDEEKKPKKKKRKLEKPAPANRLPSEHSTIVFVPTK 398

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
            +V  +   L   G  V  I+G +DQ +R + L  F+     ++V +D+AARG+DIP + 
Sbjct: 399 HHVEYVTTLLRDAGHLVLYIYGTLDQHARKQQLYQFRAAYTNILVVTDVAARGIDIPVLA 458

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           +V N+ +P  ++ +IHR+GRT RAG  G A+++V ++++ ++  +E  + KKV
Sbjct: 459 NVVNYTLPGSSKIFIHRVGRTARAGNKGWAYSIVNEKELPYLLDLELFLGKKV 511


>gi|302765623|ref|XP_002966232.1| hypothetical protein SELMODRAFT_143895 [Selaginella moellendorffii]
 gi|300165652|gb|EFJ32259.1| hypothetical protein SELMODRAFT_143895 [Selaginella moellendorffii]
          Length = 412

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 198/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 41  FDSMGLHENLLRGIYAYGFEKPSAIQQRGIVPFCRGLDVIQQAQSGTGKTATFCSGILQQ 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     +   + L+L PTRELA Q+       G      V   +GG       +  + G
Sbjct: 101 LD---GHLNECQALVLAPTRELAQQIEKVMRALGDYLQTKVHACVGGTDVRQDQRICQAG 157

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L   +I + V+DEAD ML  GF   I +I  L+P   Q  L
Sbjct: 158 VHVVVGTPGRVYDMLRRRALRSEHIRMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGL 217

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+ NP RI V     T E I+  +V    +  K    C L + L 
Sbjct: 218 FSATMPPEALEITRKFMSNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLA 277

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IFCN ++ V  L   L  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 278 ITQ-----SVIFCNTRRKVDWLTDKLRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 332

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   + K+D K +  
Sbjct: 333 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFLTKDDEKMLFD 392

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     ++ L  +++ L
Sbjct: 393 IQKFYNTVIEELPSNVADL 411


>gi|322502575|emb|CBZ37658.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 803

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/365 (35%), Positives = 201/365 (55%), Gaps = 7/365 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ A+L  G+  PTPIQ K IP +LQ +DV  +A+TG+GKTA+F++PML  
Sbjct: 24  FQSFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLNT 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  A++   R L+L PTREL+ Q+  N     K  +L  A L+GG   + Q + L   
Sbjct: 84  L-KAHAKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDSMDQQFELLASN 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR+L       L + ++  LV+DEADR+ ++G  P I  I   +P + Q  L
Sbjct: 143 PDVVVATPGRLLHIMEEASLHLTSVRCLVLDEADRLFELGLQPQIGAIMQKLPESCQRAL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCALLQQLLQ 240
           FSATM   L + +   L NP  I +++    ++ ++     V    + +    LL+++L 
Sbjct: 203 FSATMPTVLAEFTSAGLHNPVVIRLDSEMKLSDQLKQSAFLVRNDEKVAALIVLLKRVLH 262

Query: 241 SQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             +   N    +IF   K +V  L   L     S  A+HG +DQ +R   + +F +    
Sbjct: 263 VGEAAANNAQALIFVESKFHVEFLQMILTHYSISTSAVHGQMDQEARRLAVRSFAKRETS 322

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK-H 356
           +MV +D+AARGLD+P + +V NF  P   + ++HR+GR  RAGR G A++++  ED   +
Sbjct: 323 VMVVTDVAARGLDLPLLDNVVNFSFPFNPKLFVHRVGRVARAGRSGTAYSIMTFEDFPYY 382

Query: 357 IDAIE 361
           ID ++
Sbjct: 383 IDLLQ 387


>gi|224067501|ref|XP_002193843.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
           [Taeniopygia guttata]
          Length = 617

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/361 (36%), Positives = 198/361 (54%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G  +PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 178 FKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 237

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 238 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDGLPPLRCALCIGGMS 297

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + ++ G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 298 VKEQMETIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 357

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  I +N   + A +++   V    +Y K+
Sbjct: 358 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--ITINVGRAGAASLD---VVQEVEYVKE 412

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 413 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 472

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F++G   ++ A+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 473 FRDGKKDVLGATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 532

Query: 351 K 351
           K
Sbjct: 533 K 533


>gi|167382487|ref|XP_001736127.1| DEAD box ATP-dependent RNA helicase [Entamoeba dispar SAW760]
 gi|165901566|gb|EDR27644.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba dispar
           SAW760]
          Length = 684

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 122/355 (34%), Positives = 198/355 (55%), Gaps = 3/355 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+ + +  VL  GY  PTPIQ K IP +L+ +D+  +A+TG+GKTA++++P++  
Sbjct: 15  FQSMGLNKQTLLGVLKKGYRVPTPIQRKAIPAILRGNDIIAMARTGSGKTAAYLVPIINR 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE         R+LI+ PTRELA Q    F + GK  NL  +L+IGG     Q   L  G
Sbjct: 75  LET--HSTEGVRSLIICPTRELALQTIKVFNELGKLTNLKASLIIGGSKLSDQFDNLSSG 132

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+        + +N +E++  DEAD M + GF   + +I  ++P TRQ LL
Sbjct: 133 PDIIVATPGRLTFILEGANISLNRVEMVCFDEADLMFESGFSEQVSDIMRMLPPTRQILL 192

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L +  +N L+ P+ I ++T    +  +++ F     ++ K+  LL  LL   
Sbjct: 193 FSATLPRNLAEFLKNTLKQPEIIRLDTEERLSPDLDNFFYHV-KEHEKEGHLLYLLLDLI 251

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  ++FC  +  V  L   L+        + G  DQ+ R   L  F++    +++ +
Sbjct: 252 GDKEQTVVFCATRHEVEYLNEVLKIFDIKTSMMFGKADQQEREINLKKFRKQETHVLLVT 311

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           D+AARG+DIP++ +V N+D P   + YIHR GR  RAGR GK +  V  +++ ++
Sbjct: 312 DVAARGVDIPELDNVINYDFPATPKLYIHRCGRVARAGRMGKCYNFVQTDEVGYL 366


>gi|146304259|ref|YP_001191575.1| DEAD/DEAH box helicase domain-containing protein [Metallosphaera
           sedula DSM 5348]
 gi|145702509|gb|ABP95651.1| DEAD/DEAH box helicase domain protein [Metallosphaera sedula DSM
           5348]
          Length = 348

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 202/361 (55%), Gaps = 20/361 (5%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           LS ++  A+ D  Y +PT +Q   IP+ +    V   A+TG+GKTAS+++P+L       
Sbjct: 5   LSDQLKRALADINYQRPTKVQEIAIPVFMNGESVIVQAKTGSGKTASYLIPVLE------ 58

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
              R    LIL PTRELA QVA   ++ GK    ++ ++IGG+ ++ Q +  E  +D+++
Sbjct: 59  ---RYHNALILVPTRELAEQVAYEAKRLGKYKRTSIGVIIGGVGYDRQER--ESDSDIIV 113

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGRILD + RG L ++  ++ ++DE DRMLDMGFI  ++ I S          FSAT+
Sbjct: 114 GTPGRILDLWGRGTLDLSRFKLAIVDEVDRMLDMGFIDDVRMILSKTS-AENFGFFSATV 172

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
             E+++++E F  N + ++V+        I+H F      + +K   L +     D    
Sbjct: 173 PPEVKELAEEFSPNARFLKVDEYKPVE--IDHEFYPVRDNWHEKVTKLLK-----DVNGK 225

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            I+F N K     L  ++  +  S   +HG++ Q SR + L +FK G   +++++DLAAR
Sbjct: 226 AIVFTNTKARAEALYDNISDR-VSTSLLHGDMSQGSRRRNLMSFKRGDSDILISTDLAAR 284

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           G+D+ DV  V NFD+P   E YIHR+GRTGR GR G+A +   + + + +  I  +I+  
Sbjct: 285 GIDVIDVEQVVNFDLPRDVETYIHRVGRTGRMGRKGRAVSYYTRREEEMVQRIRSIIKST 344

Query: 368 V 368
           +
Sbjct: 345 I 345


>gi|95102876|gb|ABF51379.1| eukaryotic translation initiation factor 4A [Bombyx mori]
          Length = 420

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 136/378 (35%), Positives = 210/378 (55%), Gaps = 9/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L  +++  +   G+ KP+ IQ + I   +Q  DV   AQ+GTGKTA+F    ++I
Sbjct: 49  FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---SISI 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++    +R  + LIL PTRELA Q+       G + N      IGG       ++LE G
Sbjct: 106 LQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  N I++ V+DEAD ML  GF   I ++  ++    Q +L
Sbjct: 166 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM D++ +VS  F+++P RI V     T E I+  ++A   +  K    L+ L    
Sbjct: 226 LSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWK----LETLCDLY 281

Query: 243 DTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           DT+     +IFCN ++ V  L  S+  + F+V A+HG++DQR R  I+  F+ G+ ++++
Sbjct: 282 DTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLI 341

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V + D + +  I
Sbjct: 342 TTDLLARGIDVQQVSCVINYDLPSNRENYIHRIGRGGRFGRKGIAINFVTEADRRALKDI 401

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      +  +  D+++L
Sbjct: 402 EDFYHTSIVEMPSDVANL 419


>gi|327351047|gb|EGE79904.1| ATP-dependent RNA helicase DBP8 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 553

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 137/384 (35%), Positives = 203/384 (52%), Gaps = 18/384 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL+P +V ++      +PT IQ   IP +++  D  G ++TG+GKT +F  P   
Sbjct: 122 SFASLGLAPWLVGSLSVMAIKRPTAIQKACIPEIIKGRDCIGGSRTGSGKTVAFAAP--- 178

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL+K          +IL PTRELA Q+ +  +      +L   L+ GG     Q   L +
Sbjct: 179 ILQKWAEDPFGVFAVILTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIALSQ 238

Query: 122 GADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSLV 174
              ++I TPGR+ DH           +N   ++V+DEADR+L  G    +P ++   S +
Sbjct: 239 RPHIVIATPGRLADHITSSGADTICGLNRTRVVVLDEADRLLASGPGSMLPDVETCLSAL 298

Query: 175 P--FTRQTLLFSATMTDELQ--KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY-- 228
           P   +RQTLLF+AT+T E++  K        P        +    TI      TY Q   
Sbjct: 299 PPSTSRQTLLFTATVTPEVRALKSMPRPANKPPIFVTEISTENQATIPPTLKQTYLQVPL 358

Query: 229 SKKCALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
           + + A L  LL ++ +  K  IIFCN+ K    L   L + G  V ++H  + Q  R   
Sbjct: 359 THREAFLHTLLSTEANAPKPSIIFCNRTKTADLLERMLRRLGHRVTSLHSLLPQSERTAN 418

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           LS F+    +++VA+D+AARGLDIP V  V NFDVP   ++Y+HR+GRT RAGR G+A T
Sbjct: 419 LSRFRASAARILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGREGEAVT 478

Query: 348 LVAKEDIKHIDAIEKLIEKK-VDW 370
           LV + D++ + AIE  + KK ++W
Sbjct: 479 LVGQRDVQLVLAIEDRVGKKMIEW 502


>gi|297529359|ref|YP_003670634.1| DEAD/DEAH box helicase [Geobacillus sp. C56-T3]
 gi|297252611|gb|ADI26057.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. C56-T3]
          Length = 436

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/384 (35%), Positives = 207/384 (53%), Gaps = 12/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ A+    + KPT IQ + IP  L+   + G +QTGTGKT +++LP++  
Sbjct: 6   FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIIEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           ++  RA V+    +I  PTRELA Q+     K  K    +  +    LIGG   +   +K
Sbjct: 66  IKPERAEVQ---AVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L     ++I TPGRI D      L ++   ILV+DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+   + +++NP  + VN   +  E IEH  +    +  +K  LL+ +
Sbjct: 183 QMLVFSATIPEKLKPFLKKYMENPTFVHVNPKQTANENIEHVLIPLRGR--EKTKLLRDV 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S +     I+F N +K    +   L +QG  V  +HG++  R R K+++  ++   Q 
Sbjct: 241 LLSYNPYL-AIVFVNTRKMADEVADRLAEQGLKVGVLHGDLTPRERRKMMNLIRDLEFQY 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N+++P+  + YIHR GRT RAG  G A T+    D   I 
Sbjct: 300 VVATDLAARGIDIEGVSHVINYELPDDLQFYIHRAGRTARAGYSGIAATIYEPSDQDAIA 359

Query: 359 AIEKLIEKKV--DWLNGDLSSLNP 380
            +EK+    V  D + G+   L P
Sbjct: 360 RLEKMGISFVHRDLVRGEWKELPP 383


>gi|112983736|ref|NP_001037376.1| eukaryotic translation initiation factor 4A [Bombyx mori]
 gi|73695588|gb|AAZ80489.1| translation initiation factor 4A [Bombyx mori]
          Length = 420

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 136/378 (35%), Positives = 210/378 (55%), Gaps = 9/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L  +++  +   G+ KP+ IQ + I   +Q  DV   AQ+GTGKTA+F    ++I
Sbjct: 49  FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---SISI 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++    +R  + LIL PTRELA Q+       G + N      IGG       ++LE G
Sbjct: 106 LQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  N I++ V+DEAD ML  GF   I ++  ++    Q +L
Sbjct: 166 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM D++ +VS  F+++P RI V     T E I+  ++A   +  K    L+ L    
Sbjct: 226 LSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWK----LETLCDLY 281

Query: 243 DTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           DT+     +IFCN ++ V  L  S+  + F+V A+HG++DQR R  I+  F+ G+ ++++
Sbjct: 282 DTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLI 341

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V + D + +  I
Sbjct: 342 TTDLLARGIDVQQVSCVINYDLPSNRENYIHRIGRGGRFGRKGIAINFVTEADRRALKDI 401

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      +  +  D+++L
Sbjct: 402 EDFYHTSIVEMPSDVANL 419


>gi|66802312|ref|XP_629938.1| hypothetical protein DDB_G0291804 [Dictyostelium discoideum AX4]
 gi|74896805|sp|Q54E49|DDX6_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx6; AltName:
           Full=DEAD box protein 6
 gi|60463332|gb|EAL61523.1| hypothetical protein DDB_G0291804 [Dictyostelium discoideum AX4]
          Length = 423

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 127/361 (35%), Positives = 192/361 (53%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF DL L   ++  + + GYVKP+PIQ K IP+ L   D+   A+ GTGKTASF++P L 
Sbjct: 50  DFDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIPAL- 108

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             EK      + + LIL PTRELA Q +   ++ GK  N+ V    GG   +    +L  
Sbjct: 109 --EKTDPTKDVIQVLILVPTRELALQTSQVCKELGKYMNVQVMASTGGTSLKDDIMRLYN 166

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD   +    ++N   +++DEAD++L   F P ++ + + +P  RQ L
Sbjct: 167 PVHILVATPGRVLDLAQKNVANLSNCHTMIMDEADKLLSQEFQPLVEQLINFLPQQRQIL 226

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++   E++LQ    I +    +     ++     + +  +K   L  L  S
Sbjct: 227 LFSATFPVTVKSFKEHYLQQAFEINLMEELTLKGVTQY---YAFVEERQKIHCLNTLF-S 282

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 283 KLQINQSIIFCNSVNRVELLAKKITELGYSCFFIHAKMVQAHRNRVFHDFRNGACRNLVS 342

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI DV  V NFD P  +E Y+HRIGR+GR G  G A  L+  ED   +  IE
Sbjct: 343 SDLFTRGIDIQDVNVVINFDFPKHSETYLHRIGRSGRFGHLGLAINLITYEDRFSLYKIE 402

Query: 362 K 362
           +
Sbjct: 403 Q 403


>gi|327459301|gb|EGF05647.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK1]
 gi|327490518|gb|EGF22299.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK1058]
 gi|332364598|gb|EGJ42367.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK1059]
          Length = 447

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 198/369 (53%), Gaps = 15/369 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L++    V+    +I  P+RELAAQ+   A     + +   + VA  +GG     Q  
Sbjct: 61  QMLDEEADSVQ---AVITAPSRELAAQIYQAARQLASFSEK-EIRVANYVGGTDKARQIG 116

Query: 118 KLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           KLE     ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P 
Sbjct: 117 KLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPK 176

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TIE+  ++T  +  K   + Q
Sbjct: 177 DLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGR-DKNAQIYQ 235

Query: 237 --QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             QLLQ    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K  
Sbjct: 236 ISQLLQPYLAM----IFVNTKMRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G HG A TL    D 
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLHGTAITLYQPSDD 351

Query: 355 KHIDAIEKL 363
             I  +EK+
Sbjct: 352 SDIRELEKM 360


>gi|170093371|ref|XP_001877907.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647766|gb|EDR12010.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 441

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/393 (33%), Positives = 212/393 (53%), Gaps = 23/393 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+   ++ A+ +  +  PT IQ   IP  +   D+ GIA TG+GKT +FV+P+L  
Sbjct: 6   FAELGICAPLLQALEELKHTTPTEIQTGCIPQAIAGRDIIGIAPTGSGKTLAFVIPILHR 65

Query: 63  LEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK-K 118
           L         P+     +L PTRELA Q++  FE  G    +   +++GG     Q   +
Sbjct: 66  LWDN------PQGYFACVLSPTRELAYQISAQFEALGAAMGVQSVVIVGGDDDRVQQAVR 119

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +   +++ TPGR+ DH    K   + +++ LV+DEADR+LD+ F   I  I   +P  
Sbjct: 120 LAQKPHIIVATPGRLHDHLKSTKGFSLRSLKHLVLDEADRLLDLDFQREITEIMQSIPKE 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R T LFSATMT  + K+    L +P R++       A    +  V+T  Q+   C L+++
Sbjct: 180 RCTYLFSATMTANVSKLQRASLSDPVRVD-------ASLFRYTTVSTLVQHYLLCPLVEK 232

Query: 238 ---LLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
              L+   +++     I+F     +   L   L   GF    +HG + Q  R+   + FK
Sbjct: 233 EVTLVYLINSLVQNLIIVFVRTVADAKRLSIILRSLGFDAVPLHGELTQSQRLGAFTRFK 292

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G  +++VA+D+A+RGLD+P+V  V N+D P  +++YIHR+GRT RAGR GK+  +V + 
Sbjct: 293 SGKSKILVATDVASRGLDVPNVDVVINYDTPTHSKDYIHRVGRTARAGRAGKSILMVTQY 352

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
           D + +  +EK++ +K+D    DL  +    E++
Sbjct: 353 DAELMLRLEKVLNQKLDLYPTDLQEIALLKERV 385


>gi|154345840|ref|XP_001568857.1| DEAD box RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134066199|emb|CAM43989.1| putative DEAD box RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 571

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 207/368 (56%), Gaps = 17/368 (4%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--ILEKGRARVRMP 73
           +L  G+  PTPIQ ++  +VL   D+ G+A+TG+GKT +F++P L    L++       P
Sbjct: 119 LLAQGFKAPTPIQAQSWSIVLSGRDLVGVAKTGSGKTLAFIVPALAHIALQEPLKMGDGP 178

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
             ++L PTRELA Q+     K     ++    + GG P   Q   L +G  +L+ TPGR+
Sbjct: 179 MVIVLAPTRELAQQIEQETIKVLPQ-SIRCGCIYGGAPKGPQLGLLRQGVHILVATPGRL 237

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193
           +D     ++ +  +  LV+DEADRMLDMGF P ++ I   +   RQTL+FSAT   ++Q 
Sbjct: 238 IDFMEIKRVNLLRVTYLVLDEADRMLDMGFEPQVRAICGQIRPDRQTLMFSATWPRDIQN 297

Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG--IIF 251
           ++ +F +N  RI V +     E + +  V  +   + + A L +L +  +  +N   ++F
Sbjct: 298 LAASFQKNWVRINVGS----MELLANKDVTQHFILTSEAAKLDELKRLMERHRNQRVLVF 353

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           C  KK    L   L++ G    AIHG+ +QR R  IL  F++ +   +VA+D+AARGLDI
Sbjct: 354 CKTKKTADYLEFQLKRNGVDCMAIHGDKEQRQREFILERFRKDSRLCVVATDVAARGLDI 413

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED--------IKHIDAIEKL 363
            ++  V N+D P + ++Y+HRIGRTGRAG  G +FT++ K +         + ++ +E+ 
Sbjct: 414 KELETVVNYDFPMQIDDYVHRIGRTGRAGAKGASFTMITKHETQLNASTVFQLVELVERA 473

Query: 364 IEKKVDWL 371
            ++   WL
Sbjct: 474 GQEAPGWL 481


>gi|118463537|ref|YP_882142.1| ATP-dependent RNA helicase [Mycobacterium avium 104]
 gi|118164824|gb|ABK65721.1| ATP-dependent RNA helicase [Mycobacterium avium 104]
          Length = 455

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 127/363 (34%), Positives = 195/363 (53%), Gaps = 10/363 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+  ++V A+   G   P PIQ +T+P  L   DV G  +TG+GKT +F +P++  
Sbjct: 7   FADLGVPARIVDALTARGITSPFPIQAETLPDTLAGRDVLGRGKTGSGKTLAFSIPLVGR 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G  R   P  L+L PTRELA Q+    E       L V+ + GG+    Q   L+ G
Sbjct: 67  LSTGNRRPARPTGLVLAPTRELATQITATLEPLAAACGLRVSTIFGGVSQHRQVTALKAG 126

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++  PGR+ D   +  + +  + + VIDEAD M D+GF+P +  I +  P   Q LL
Sbjct: 127 VDIVVACPGRLEDLMRQRLITLEAVRVTVIDEADHMADLGFLPGVTRILAATPNDGQRLL 186

Query: 183 FSATMTDELQKVSENFLQNP---KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           FSAT+ + + K+   FL++       E N+P S  E   H F    AQ  K+  L+ +L 
Sbjct: 187 FSATLDNGVDKLVTRFLRDAVLHSVDEANSPVS--EMTHHVFHVDSAQAKKE--LVHRL- 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +  T +  I+F   K     L   L + G     +HGN+ Q +R + L+ F  G+ +++
Sbjct: 242 -ASGTGRR-ILFLRTKHQARKLARQLTESGVPSVDLHGNLSQPARERNLAMFAAGSARVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+ + +V  V + D P+  ++Y+HR GRT RAG  G   T+V  E  +H  A
Sbjct: 300 VATDIAARGVHVDEVELVVHIDPPSEHKSYLHRSGRTARAGSAGDVVTVVLPEQREHTRA 359

Query: 360 IEK 362
           + +
Sbjct: 360 LMR 362


>gi|323349261|gb|EGA83490.1| Prp28p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 588

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 141/402 (35%), Positives = 217/402 (53%), Gaps = 31/402 (7%)

Query: 2   DFADLGLSPKVVCAVL--DAGYVKPTPIQIKTIPLVL---QRHDVCGIAQTGTGKTASFV 56
           ++ +L + P+ +  V+  +  +  PTPIQ  TIP V    Q  D  G+A TG+GKT +FV
Sbjct: 173 NWEELNIIPRDLLRVIIQELRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFV 232

Query: 57  LPMLTILEKGRAR------VRMPRTLILEPTRELAAQVADNFEK----YGK--NYNLTVA 104
           +P+L  + +   R      +  P+ LIL PTREL  Q+    +K    + K  NY+  V 
Sbjct: 233 IPILIKMSRSPPRPPSLKIIDGPKALILAPTRELVQQIQKETQKVTXIWSKESNYDCKVI 292

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
            ++GG   E  +  L  G D+L+ TPGR++D      L+M  +E LV+DEAD+M+D+GF 
Sbjct: 293 SIVGGHSLEEISFSLSEGCDILVATPGRLIDSLENHLLVMKQVETLVLDEADKMIDLGFE 352

Query: 165 PYIQNITSLV------PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
             + NI + V         RQTL+F+ATMT  ++K++  ++Q P    +   + +   I+
Sbjct: 353 DQVTNILTKVDINADSAVNRQTLMFTATMTPVIEKIAAGYMQKPVYATIGVETGSEPLIQ 412

Query: 219 HCFVATYAQYSK-KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ-GFSVCAIH 276
              V  YA   + K   L+ ++   D     IIF N K+    L    +K+    V  +H
Sbjct: 413 Q--VVEYADNDEDKFKKLKPIVAKYDPPI--IIFINYKQTADWLAEKFQKETNMKVTILH 468

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G+  Q  R   L  F+   +Q+M+A+++AARGLDIP+V  V NF +  + ++YIHRIGRT
Sbjct: 469 GSKSQEQREHSLQLFRTNKVQIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRT 528

Query: 337 GRAGRHGKAFTLV-AKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
           GRA   G A + V A ED   I  + K + +K D LN ++ S
Sbjct: 529 GRAANEGTAVSFVSAAEDESLIRELYKYV-RKHDPLNSNIFS 569


>gi|303277179|ref|XP_003057883.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460540|gb|EEH57834.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 532

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 126/353 (35%), Positives = 202/353 (57%), Gaps = 3/353 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P V  A+   GY  PTPIQ K IP+ L   DV  +A+TG+GKTA+F++P+L  
Sbjct: 82  FEAMDLLPDVFRAIKRKGYRIPTPIQRKAIPVALSGADVVAMARTGSGKTAAFLIPVLHK 141

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +  +     R ++L PTRELA Q     ++  K  +L    ++GG   EAQ + L   
Sbjct: 142 L-RAHSLKAGARAIVLSPTRELALQTFKFAQELSKFTDLRCVCIVGGDSMEAQFEDLATN 200

Query: 123 ADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D+ + TPGR+L H      L + +++ +V+DEADR+L+MGF   +++I   V   RQTL
Sbjct: 201 PDLYVATPGRLLHHVEEIDGLTIRSVQHVVLDEADRLLEMGFSDQLRDIMRQVSDVRQTL 260

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  +L +     L++P+ I ++     ++ +   FV T A   K   LL  L + 
Sbjct: 261 LFSATMPSQLAEFVRVGLRDPQVIRLDAEMKISDDLRLSFVVTRAD-EKIPMLLYILREV 319

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  ++F   + +V  L   LE++G    A++G++D  +R   +  F+    +++V 
Sbjct: 320 IPDKQQTVVFTATRHHVELLMAVLEEEGVKCSAVYGSMDMAARKINIGKFRARKSEVLVV 379

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           +D+AARG+DIP + +V NFD P R + ++HR+GR  RAGR G A +++ KE++
Sbjct: 380 TDVAARGIDIPLLDNVVNFDFPPRPKLFVHRVGRVARAGRSGVAHSILTKEEM 432


>gi|156089185|ref|XP_001611999.1| DEAD/DEAH box helicase domain containing protein [Babesia bovis]
 gi|154799253|gb|EDO08431.1| DEAD/DEAH box helicase domain containing protein [Babesia bovis]
          Length = 649

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 134/381 (35%), Positives = 204/381 (53%), Gaps = 18/381 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +++DLGLS  ++ AV D GY  P+ IQ K IP+ L+  D+   A+TG+GK+A+F++P L 
Sbjct: 126 NWSDLGLSRSLIKAVFDMGYKAPSIIQSKVIPVALEGKDLLATAETGSGKSAAFLIPTLQ 185

Query: 62  IL--------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
            L                G  RV   + LIL PTRELAAQ  D F    +N      L+ 
Sbjct: 186 RLITAGVIKQKDVDLTRGGNQRV-GTKALILLPTRELAAQCYDVFLALTQNLTQNGVLIT 244

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILD-HFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
           GG+P + Q  KL R   ++  TPG++LD   N   + M+ IEI+V+DEADR+LD+GF   
Sbjct: 245 GGVPVKEQEAKLRRMPYIVFATPGKVLDIMLNSNCIHMDAIEIVVLDEADRLLDLGFKDE 304

Query: 167 IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
           + +I  L    RQT+LFSAT+T+  +++    L NP  I+     + A+T++   +   +
Sbjct: 305 LAHILQLCNKERQTMLFSATLTEATKELVPVALVNPIYIKATPKITVAKTLKCENIQLKS 364

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              ++ A L   L SQ   K  I+F   K+         +  G     +HG++ Q  R +
Sbjct: 365 DDLREAAAL--YLCSQRYTKKTILFFQTKRAAHRNALVFQLAGLKSGELHGDLAQAKRFE 422

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            +  FK G +  ++AS+LA+RGLDIP +  V N  +P     ++HR+GRT R G  G A 
Sbjct: 423 QIEKFKNGEVDFLMASELASRGLDIPGISAVINVHLPFDNVRFLHRVGRTARMGEEGTAI 482

Query: 347 TLVAKEDIKHIDAIEKLIEKK 367
           T   +++   I ++ K I  K
Sbjct: 483 TFYTEKERSAIKSMMKSITDK 503


>gi|291166420|gb|EFE28466.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Filifactor alocis
           ATCC 35896]
          Length = 381

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 126/369 (34%), Positives = 206/369 (55%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L  + + A+ D     PT IQ K IP + + +D+   AQTGTGKT +F++P+L
Sbjct: 1   MKFKEFNLRKEHILALQDMYIENPTDIQSKVIPKMRKGNDILAHAQTGTGKTLAFLIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +    + ++   +LI+ PTREL+ Q+ D  + + K  +L+V    GG     Q +KL 
Sbjct: 61  ESIPDISSGIK---SLIIVPTRELSNQITDVLKYFQKYRSLSVVNASGGHNITTQIQKLS 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+LD    G +   NI+  VIDE D++L  GF+  +  + +  P  +Q 
Sbjct: 118 SNTDIVVGTPGRVLDLLRNGNINFKNIDSFVIDEMDQILAFGFLEDVILLMNKTPRKKQV 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT++ +++K+S+ F+ NP  +         + I    V T  + S+K + L   ++
Sbjct: 178 CMFSATVSQDVKKLSKQFMLNPIYLTAERGEVVLDNISQLIVQT--KDSRKLSSLMYSIE 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHS-LEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +     +IFCN KKN   L    +  Q  ++  +HG + Q  R  IL  F+E  +Q +
Sbjct: 236 KINPFM-CMIFCNSKKNAEKLYSDFIHHQYKNMELLHGEMSQNKRENILKKFRELKVQYL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL+ARG++I  V HV N+D+P   E YIHRIGRTGR  + G A + V ++DI ++  
Sbjct: 295 ITTDLSARGMNIEGVSHVINYDIPRDVEYYIHRIGRTGRMNQIGYAISFVTEKDIANMKK 354

Query: 360 IEKLIEKKV 368
           I+K I+K +
Sbjct: 355 IQKRIKKTI 363


>gi|58465442|gb|AAW78519.1| DEAD box RNA helicase-PL10B [Monopterus albus]
          Length = 376

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 126/353 (35%), Positives = 197/353 (55%), Gaps = 25/353 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ +   ++  +  + Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+ P+L+ 
Sbjct: 26  FQDVDMGEIIMGNIALSRYTRPTPVQKYAIPIIKSKRDLMACAQTGSGKTAAFLPPILSQ 85

Query: 63  L-----------------EKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV 103
           +                 E G+   R + P +L+L PTRELA Q+ D   K+     +  
Sbjct: 86  IYTDGPGEALNAAKASGQENGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRSRVRP 145

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163
            ++ GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF
Sbjct: 146 CVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMGF 205

Query: 164 IPYIQNITS--LVPF--TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
            P I+ I     +P    RQT++FSAT   E+Q ++ +FL+    + V    ST+E I  
Sbjct: 206 EPQIRRIVEQDTMPHKGIRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQ 265

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
             V  + + S K + L  LL +       ++F   KK    L   L ++G++  +IHG+ 
Sbjct: 266 KVV--WVEESDKRSFLLDLLSATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDR 323

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
            QR R + L+ F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HR
Sbjct: 324 SQRDREEALNQFRSGKCPILVATAVAARGLDISNVKHVNNFDLPSDIEEYVHR 376


>gi|256270725|gb|EEU05887.1| Prp28p [Saccharomyces cerevisiae JAY291]
          Length = 588

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 140/402 (34%), Positives = 215/402 (53%), Gaps = 31/402 (7%)

Query: 2   DFADLGLSPKVVCAVL--DAGYVKPTPIQIKTIPLVL---QRHDVCGIAQTGTGKTASFV 56
           ++ +L + P+ +  V+  +  +  PTPIQ   IP V    Q  D  G+A TG+GKT +FV
Sbjct: 173 NWEELNIIPRDLLRVIIQELRFPSPTPIQRIAIPNVCNMKQYRDFLGVASTGSGKTLAFV 232

Query: 57  LPMLTILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGK------NYNLTVA 104
           +P+L  + +   R      +  P+ LIL PTREL  Q+    +K  K      NY+  V 
Sbjct: 233 IPILIKMSRSPPRPPSLKIIDGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVI 292

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
            ++GG   E  +  L  G D+L+ TPGR++D      L+M  +E LV+DEAD+M+D+GF 
Sbjct: 293 SIVGGHSLEEISFSLSEGCDILVATPGRLIDSLENHLLVMKQVETLVLDEADKMIDLGFE 352

Query: 165 PYIQNITSLV------PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
             + NI + V         RQTL+F+ATMT  ++K++  ++Q P    +   + +   I+
Sbjct: 353 DQVTNILTKVDINADSAVNRQTLMFTATMTPVIEKIAAGYMQKPVYATIGVETGSEPLIQ 412

Query: 219 HCFVATYAQYSK-KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ-GFSVCAIH 276
              V  YA   + K   L+ ++   D     IIF N K+    L    +K+    V  +H
Sbjct: 413 Q--VVEYADNDEDKFKKLKPIVAKYDPPI--IIFINYKQTADWLAEKFQKETNMKVTILH 468

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G+  Q  R   L  F+   +Q+M+A+++AARGLDIP+V  V NF +  + ++YIHRIGRT
Sbjct: 469 GSKSQEQREHSLQLFRTNKVQIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRT 528

Query: 337 GRAGRHGKAFTLV-AKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
           GRA   G A + V A ED   I  + K + +K D LN ++ S
Sbjct: 529 GRAANEGTAVSFVSAAEDESLIRELYKYV-RKHDPLNSNIFS 569


>gi|6118254|gb|AAF04040.1|AF187729_1 DEAD-box protein abstrakt [Drosophila melanogaster]
          Length = 614

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 136/384 (35%), Positives = 209/384 (54%), Gaps = 29/384 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G   PTPIQ++ +P VL   D+ GIA TG+GKT  FVLP++  
Sbjct: 174 FREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMF 233

Query: 63  -LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
            LE+  +    R   P  LI+ P+RELA Q  +  + Y K+        +   L +GG+P
Sbjct: 234 ALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLP 293

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
                  + RG  +++ TPGR++D  ++  L ++    L +DEADRM+DMGF   ++ I 
Sbjct: 294 VSEALDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTIF 353

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  + + L  P  + +N   + A ++    V    +Y K+
Sbjct: 354 SFFKGQRQTLLFSATMPKKIQNFARSALVKP--VTINVGRAGAASMN---VTQQVEYVKQ 408

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL   Q T    +IF  +K++V  +   L  +G    AIHG  DQ  R + +  
Sbjct: 409 EAKVVYLLDCLQKTAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDA 468

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           ++ G   ++VA+D+A++GLD P+V HV N+D+P+  ENY+HRIGRTGR+   G A TL+ 
Sbjct: 469 YRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLIN 528

Query: 351 KE-------DIKHIDAIEKLIEKK 367
           K        D+KH+     LIE K
Sbjct: 529 KTTEQSVLLDLKHL-----LIEGK 547


>gi|145517903|ref|XP_001444829.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412262|emb|CAK77432.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1127

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/353 (36%), Positives = 196/353 (55%), Gaps = 17/353 (4%)

Query: 10  PKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE---- 64
           P  +  V+D   +  PTPIQ    PL+L  +D+ G+A+TG+GKT  ++LP L  ++    
Sbjct: 108 PPQIQNVIDGLNFRAPTPIQSVVFPLILSGYDLIGVAETGSGKTFGYLLPGLIQIKCQNY 167

Query: 65  --KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               R R+  P  LIL PTREL  Q+A     + K  NLTVA   GG   + Q ++++R 
Sbjct: 168 GSNFRNRINGPEILILAPTRELVMQIAQQVSLFMKPNNLTVATAYGGQNRDQQAQQIKRN 227

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+  PGR+ D    G L ++ +  LVIDEADR+LDMGF   ++ I       RQT+ 
Sbjct: 228 PDILVACPGRLKDFLQEGILDLSKVTYLVIDEADRLLDMGFEDDVRFIVQRTRQDRQTVF 287

Query: 183 FSATMTDELQKVSENF-LQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQ 240
           FSAT    ++ +S +F  ++P  ++V   + T  + I+   +  Y         LQ LL 
Sbjct: 288 FSATWPKAVRNLSLDFCAEDPIYVQVGRSNLTVNKNIDQEIICLY-----NNQKLQTLLD 342

Query: 241 SQDTMK---NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             D +K     +IF   + +   L   + ++G+   A+HGN  Q  R  I+  +K+G  +
Sbjct: 343 ILDQLKINDKVLIFAETRISCEQLSVDMTQEGYYAVALHGNKTQGQRDSIMECYKKGDTK 402

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           L+ A+DLA+RGLD+ D+  V N+D P   ++YIHRIGRTGRAGR G+A +  A
Sbjct: 403 LLCATDLASRGLDVSDITVVINYDFPKYFDDYIHRIGRTGRAGRKGRAISFFA 455


>gi|67970455|dbj|BAE01570.1| unnamed protein product [Macaca fascicularis]
          Length = 437

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/344 (37%), Positives = 191/344 (55%), Gaps = 17/344 (4%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-----PR 74
           G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++    +   R+       P 
Sbjct: 15  GIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPY 74

Query: 75  TLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIPFEAQNKKLERGADVLIC 128
            LI+ P+RELA Q     E Y +         L  AL IGG+  + Q + +  G  +++ 
Sbjct: 75  GLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVA 134

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I S     RQTLLFSATM 
Sbjct: 135 TPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMP 194

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS-QDTMKN 247
            ++Q  +++ L  P  + +N   + A +++   V    +Y K+ A +  LL+  Q T   
Sbjct: 195 KKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKEEAKMVYLLECLQKTPPP 249

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            +IF  +K +V  +   L  +G    AIHG  DQ  R K +  F+EG   ++VA+D+A++
Sbjct: 250 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 309

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + K
Sbjct: 310 GLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 353


>gi|50302587|ref|XP_451229.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74690512|sp|Q6CXW0|DBP8_KLULA RecName: Full=ATP-dependent RNA helicase DBP8
 gi|49640360|emb|CAH02817.1| KLLA0A05203p [Kluyveromyces lactis]
          Length = 435

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 148/438 (33%), Positives = 237/438 (54%), Gaps = 30/438 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LG S  +V A+     V+PT IQ   IP +L+  D  G A TG+GKT +F  PMLT
Sbjct: 5   EFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLT 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              K     +    ++L PTRELA Q+A+ F  +G   N+ VA+++GG     Q  +L++
Sbjct: 65  ---KWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQK 121

Query: 122 GADVLICTPGRILDH-FNRGKLL---MNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
               +I TPGR+  H  N G+     +  ++ LV+DEAD +L   F   +    S++P  
Sbjct: 122 RPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPK 181

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPK----RIEVNTPSSTA--ETIEHCFVATYAQYS 229
             RQ LLF+ATMTD+++ +S+      K      EV +  + A  +T+E  ++       
Sbjct: 182 NKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHV- 240

Query: 230 KKCALLQQLLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            K + L Q+L S+  +K+  IIF N+      L  +L+     V ++H  + Q+ R   +
Sbjct: 241 -KESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSV 299

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             F+    ++++A+D+A+RGLDIP V  V N+D+P   + +IHR GRT RAGRHG++   
Sbjct: 300 QRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIHRAGRTARAGRHGESLCF 359

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLN--GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
           V ++DI+ ++AIE+ I KK++     GD + +   L K+       A++ + +     GF
Sbjct: 360 VTEKDIQRVEAIEERINKKMEEFTDVGDTAVIRKSLTKV-----TAAKRESLMAMDKEGF 414

Query: 407 -DRRK----KNYSSQKSH 419
            +RRK    KN S +K+H
Sbjct: 415 GERRKLQKRKNESKEKTH 432


>gi|254386941|ref|ZP_05002224.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194345769|gb|EDX26735.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 469

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 124/377 (32%), Positives = 195/377 (51%), Gaps = 12/377 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +  +++ A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 49  FADLDMPGQLLAALGAQGVTVPFPIQGATLPNTLAGRDVLGRGRTGSGKTLAFGLALLAR 108

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y +   L +A ++GG+    Q   L  G
Sbjct: 109 TAGQRAEPRQPLALVLVPTRELAQQVTDALTPYARAVKLRLATVVGGMSIGRQAGALRGG 168

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D  +RG   +N + + V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 169 AEVVVATPGRLKDLIDRGDCRLNQVAVTVLDEADQMADMGFMPQVTALLDQVRPEGQRML 228

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++   +L +P    V+  +    T+EH  +  +     +         ++
Sbjct: 229 FSATLDRNVDRLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVHGADKHRAT-------TE 281

Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++G  I+F + K  V  L   L   G    A+HG   Q  R + L+ FK G + ++V
Sbjct: 282 IAARDGRVIMFLDTKHGVDQLTRDLLSSGVRAAALHGGKSQPQRTRTLAQFKSGHVSVLV 341

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA---KEDIKHI 357
           A+++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV    + D+  +
Sbjct: 342 ATNVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPAQRRDMTRL 401

Query: 358 DAIEKLIEKKVDWLNGD 374
            A   ++       +G+
Sbjct: 402 MAAAGIVPLTTQVRSGE 418


>gi|150025165|ref|YP_001295991.1| ATP-dependent RNA helicase RhlE [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771706|emb|CAL43180.1| Putative ATP-dependent RNA helicase RhlE [Flavobacterium
           psychrophilum JIP02/86]
          Length = 448

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 131/374 (35%), Positives = 208/374 (55%), Gaps = 10/374 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   V  A+ D     PTPIQ K+  +++   D+ GIAQTGTGKT +++LP+L  
Sbjct: 4   FEQFNLPKSVQKALNDLQLTTPTPIQEKSFAVIMSGRDMMGIAQTGTGKTFAYLLPLLK- 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +        P+ +IL PTREL  QV +  EK  K  +++   + GG+    Q K++  G
Sbjct: 63  -QYTFTNTNTPKIVILVPTRELVVQVVEEVEKLTKYMSVSTLGIYGGVNINTQKKQVYEG 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR++D      +  ++ + LVIDE D ML++GF   I +I +++   RQ +L
Sbjct: 122 VDILVGTPGRVMDLALDAVIRFDDTQKLVIDEFDEMLNLGFRVQITSILAMLRTKRQNIL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATMTDE+  +  ++   P+ + +    +  E IE         ++ K  LL+ LL + 
Sbjct: 182 FSATMTDEVDAILNDYFDFPEEVSLAMSGTPLEKIEQL-SYNVPNFNTKVNLLKHLLHTN 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGF--SVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + M   ++F N KK + ++ H   +  F      IH N  Q  R+  ++ F+EG ++ ++
Sbjct: 241 EEMSRILVFVNNKK-IADMLHERIEGDFPDQFGVIHSNKSQNYRLTTMATFQEGELRGLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA--KEDIKHID 358
            +D+ ARGLDI ++ HV NF+ P   E YIHRIGRTGRA   G A + +A  +E+IK   
Sbjct: 300 TTDIMARGLDISNITHVINFEAPELPEQYIHRIGRTGRADASGIAISFIAPREEEIKF-- 357

Query: 359 AIEKLIEKKVDWLN 372
             E L+ K+++ L+
Sbjct: 358 GAEVLMGKEIEILD 371


>gi|17977678|ref|NP_524220.1| abstrakt [Drosophila melanogaster]
 gi|12643521|sp|Q9V3C0|DDX41_DROME RecName: Full=ATP-dependent RNA helicase abstrakt; Short=DEAD box
           protein abstrakt
 gi|6635811|gb|AAF19985.1|AF212866_1 abstrakt protein [Drosophila melanogaster]
 gi|7296891|gb|AAF52165.1| abstrakt [Drosophila melanogaster]
 gi|15291815|gb|AAK93176.1| LD28839p [Drosophila melanogaster]
 gi|220945834|gb|ACL85460.1| abs-PA [synthetic construct]
 gi|220955594|gb|ACL90340.1| abs-PA [synthetic construct]
          Length = 619

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 136/384 (35%), Positives = 209/384 (54%), Gaps = 29/384 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G   PTPIQ++ +P VL   D+ GIA TG+GKT  FVLP++  
Sbjct: 179 FREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMF 238

Query: 63  -LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
            LE+  +    R   P  LI+ P+RELA Q  +  + Y K+        +   L +GG+P
Sbjct: 239 ALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLP 298

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
                  + RG  +++ TPGR++D  ++  L ++    L +DEADRM+DMGF   ++ I 
Sbjct: 299 VSEALDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTIF 358

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  + + L  P  + +N   + A ++    V    +Y K+
Sbjct: 359 SFFKGQRQTLLFSATMPKKIQNFARSALVKP--VTINVGRAGAASMN---VTQQVEYVKQ 413

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL   Q T    +IF  +K++V  +   L  +G    AIHG  DQ  R + +  
Sbjct: 414 EAKVVYLLDCLQKTAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDA 473

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           ++ G   ++VA+D+A++GLD P+V HV N+D+P+  ENY+HRIGRTGR+   G A TL+ 
Sbjct: 474 YRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLIN 533

Query: 351 KE-------DIKHIDAIEKLIEKK 367
           K        D+KH+     LIE K
Sbjct: 534 KTTEQSVLLDLKHL-----LIEGK 552


>gi|224124522|ref|XP_002330044.1| predicted protein [Populus trichocarpa]
 gi|222871469|gb|EEF08600.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 133/405 (32%), Positives = 219/405 (54%), Gaps = 30/405 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +D + LGL  ++V  + + G     PIQ   +   L+  D+   A+TGTGKT +F +P++
Sbjct: 133 LDVSKLGLPHRLVQTLQNRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGIPII 192

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L +        R   R+P+ L+L PTRELA QV    ++      L+   + GG+ + 
Sbjct: 193 KRLTEDAELRGSQRRTGRLPKVLVLAPTRELAKQVEKEIKESAPY--LSSVCVYGGVSYV 250

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L RG DV++ TPGRI+D      L +  +E LV+DEAD+ML  GF   ++ I   
Sbjct: 251 TQQSALSRGVDVVVGTPGRIIDLLKGNSLKLGEVEYLVLDEADQMLSFGFEEDVEVILEN 310

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
           +P  RQ++LFSATM   ++K++  +L NP +I++  +     AE I+    A  A  + K
Sbjct: 311 LPSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAEGIK--LYALSATAASK 368

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             +L  L+         IIF   K++   +  +L     +  A+HG+I Q  R + L+ F
Sbjct: 369 RTILSDLVTVYAKGGKTIIFTQTKRDADEVSMALTNT-IASEALHGDISQHQRERTLNGF 427

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA---FTL 348
           ++G   ++VA+D+A+RGLDIP+V  + ++++PN AE ++HR GRTGRAG+ G A   FT 
Sbjct: 428 RQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDAETFVHRSGRTGRAGKEGTAILMFTS 487

Query: 349 VAKEDIKHID-------------AIEKLIEKKVDWLNGDLSSLNP 380
             +  ++ ++             AIE+++E   + +   LS ++P
Sbjct: 488 SQRRTVRSLERDAGCKFEFVSPPAIEEVLESSAEQVVATLSGVHP 532


>gi|126652237|ref|ZP_01724416.1| YqfR [Bacillus sp. B14905]
 gi|126590969|gb|EAZ85081.1| YqfR [Bacillus sp. B14905]
          Length = 434

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 140/441 (31%), Positives = 223/441 (50%), Gaps = 23/441 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D    P +  A+ + G+ +PTPIQ + IPL+L+     G A TGTGKT SF++P++  
Sbjct: 5   YTDYNFQPFLQNAIAELGFTEPTPIQKEIIPLLLKGKSAIGQAHTGTGKTHSFLIPIVQR 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    +I  PTRELA Q+ D   +  +   +   L IGG   +    KL+  
Sbjct: 65  IDVEKQEVQ---AVITSPTRELAQQIYDALSQLIEGTAIQAKLFIGGTDKQRSIDKLKTQ 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRI D  +   L ++   ILV+DEAD   DMGFI  I    S +P   +  +
Sbjct: 122 PQIVVGTPGRIRDLVSAQALFVHTAPILVVDEADLAFDMGFIEEIDGFASQMPEKLEMFV 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++LQ   + ++  P  + +N     AE I+   V   ++ S+   LL+ +    
Sbjct: 182 FSATIPEKLQPFLKKYMDAPVHVHMNDKRPVAEGIDFMLVPVRSK-SRNKRLLEVIEGIN 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   +IF N +K   ++   L + G     IHG++  R R K++   ++   Q +VA+
Sbjct: 241 PFL--AVIFTNTRKTAEHVAGYLNEHGIRCGQIHGDLSPRDRKKMMKQVRDLEYQYIVAT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARG+DI  V HV N+++P   E +IHR+GRT RAG  G A TL    +   +  +EK
Sbjct: 299 DLAARGIDIQGVSHVINYEIPEDLEFFIHRVGRTARAGNKGTAITLFEPSEEDAVVRVEK 358

Query: 363 LIEK--KVDWLNGDLSSLNPPLEKIDIAQHNHARKN-----NPIPQKSTGFDRRKKNYSS 415
           +     ++D  +G+ S L          +  HARKN     N I  K+    R+ K    
Sbjct: 359 MGIPFVQMDVKDGEWSEL----------KERHARKNRVKQENEIDVKAKALVRKPKKVKP 408

Query: 416 QKSHIPLKESEKISKLQQDIQ 436
                   E EKI K ++ ++
Sbjct: 409 GYKRNMKWEMEKIKKRERRLK 429


>gi|109089503|ref|XP_001111043.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Macaca mulatta]
 gi|296220521|ref|XP_002756344.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Callithrix
           jacchus]
          Length = 737

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 205/353 (58%), Gaps = 17/353 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ+KT   V +  D+   A+TGTGKT SF +P++  
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 63  LEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ +  +   R P+ L+L PTRELA QVA +F+   +   L+VA   GG  +++Q   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   G+L ++ +  +V+DE D+MLD+GF   +++I      T  
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 179 ----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
               QTLLFSAT    + KV++ ++++  +++++        A T+EH  +A    +S++
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEH--LAIQCHWSQR 374

Query: 232 CALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A++  +LQ    +    IIFC  KKNV  +  +   +  + C +HG+I Q  R   L  
Sbjct: 375 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKG 433

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           F+EG+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 434 FREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 486


>gi|67479813|ref|XP_655288.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56472415|gb|EAL49901.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 684

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 122/355 (34%), Positives = 198/355 (55%), Gaps = 3/355 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+ + +  VL  GY  PTPIQ K IP +L+ +D+  +A+TG+GKTA++++P++  
Sbjct: 15  FQSMGLNKQTLLGVLKKGYRVPTPIQRKAIPAILRGNDIIAMARTGSGKTAAYLVPIINR 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE         R+LI+ PTRELA Q    F + GK  NL  +L+IGG     Q   L  G
Sbjct: 75  LET--HSTEGVRSLIICPTRELALQTIKVFNELGKLTNLKASLIIGGSKLSDQFDNLSSG 132

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+        + +N +E++  DEAD M + GF   + +I  ++P TRQ LL
Sbjct: 133 PDIIVATPGRLTFILEGANISLNRVEMVCFDEADLMFESGFSEQVSDIMRMLPPTRQILL 192

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L +  +N L+ P+ I ++T    +  +++ F     ++ K+  LL  LL   
Sbjct: 193 FSATLPRNLAEFLKNTLKQPEIIRLDTEERLSPDLDNFFYHV-KEHEKEGHLLYLLLDLI 251

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  ++FC  +  V  L   L+        + G  DQ+ R   L  F++    +++ +
Sbjct: 252 GDKEQTVVFCATRHEVEYLNEILKIFDIKTSIMFGKADQQEREINLKKFRKQETHVLLVT 311

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           D+AARG+DIP++ +V N+D P   + YIHR GR  RAGR GK +  V  +++ ++
Sbjct: 312 DVAARGVDIPELDNVINYDFPATPKLYIHRCGRVARAGRMGKCYNFVQTDEVGYL 366


>gi|302832666|ref|XP_002947897.1| hypothetical protein VOLCADRAFT_103677 [Volvox carteri f.
           nagariensis]
 gi|300266699|gb|EFJ50885.1| hypothetical protein VOLCADRAFT_103677 [Volvox carteri f.
           nagariensis]
          Length = 1338

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 131/401 (32%), Positives = 207/401 (51%), Gaps = 47/401 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G +P+V+ A+   GY  PTPIQ K +PL++Q  DV G+A+TG+GKTA+FVLPM+  
Sbjct: 47  FDTMGFAPEVLRAIKRKGYRLPTPIQRKAMPLIMQGLDVVGMARTGSGKTAAFVLPMIHR 106

Query: 63  LEKGRARV-----------------RMP----------------------------RTLI 77
                ARV                 R+P                            R +I
Sbjct: 107 HVGNGARVAVSLHVPGSASCICACERVPKSTDADVHRHGWANEASELKQHSIKAGARAVI 166

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           L PTRELA Q      +  +  +L  A L+GG   E Q ++L    D+++ TPGR+  H 
Sbjct: 167 LAPTRELALQTHKTVRELARFTDLRTACLVGGDSMEVQFEELAANPDIIVATPGRLAHHL 226

Query: 138 NRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
              + L + ++E  V DEADRM +MGFI  +  +   +   RQTLLFSATM   L + ++
Sbjct: 227 EEVEGLSLRSVEYCVCDEADRMFEMGFIIQVSELLRKMSPARQTLLFSATMPATLAEFAQ 286

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
             L  P+ + ++T    +  +   F  T     K  ALL  + +     +  I+F   + 
Sbjct: 287 AGLNAPQLVRLDTERRISPQLGLAFF-TCRMEDKVAALLHLVREVVPAKQLTILFTATRH 345

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
           +   L + L K+G     + G++DQ +R   ++ F+ G   L+V +D+AARG+DIP + +
Sbjct: 346 HAEFLYNLLLKEGVDAACVFGSMDQTARKIHVAKFRGGRCHLLVTTDVAARGIDIPLIDN 405

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           V NFD P + E ++HR+GR  R GR G A++L+ ++++ ++
Sbjct: 406 VINFDFPPKPELFVHRVGRAARMGRSGTAYSLLTRDELPYL 446


>gi|194205945|ref|XP_001503679.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Equus
           caballus]
          Length = 738

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 205/353 (58%), Gaps = 17/353 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ+KT   V +  D+   A+TGTGKT SF +P++  
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 63  LEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ +  +   R P+ L+L PTRELA QVA +F+   +   L+VA   GG  +++Q   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   G+L ++ +  +V+DE D+MLD+GF   +++I      T  
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 179 ----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
               QTLLFSAT    + KV++ ++++  +++++        A T+EH  +A    +S++
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEH--LAIQCHWSQR 374

Query: 232 CALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A++  +LQ    +    IIFC  KKNV  +  +   +  + C +HG+I Q  R   L  
Sbjct: 375 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKG 433

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           F+EG+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 434 FREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 486


>gi|322820318|gb|EFZ26975.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 406

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 207/374 (55%), Gaps = 8/374 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + GL  ++   + + G+ +P+P+Q + IP+ LQ  DV   A+ GTGKTASFV+P   +
Sbjct: 33  FEEYGLRRELQMGIFEKGFERPSPVQEEAIPVALQGKDVLARAKNGTGKTASFVIP---V 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           LEK   R    + L++ PTRELA Q A   ++ GK+ + L V +  GG        +L+ 
Sbjct: 90  LEKVDTREPHIQALLMVPTRELALQTAQVTKELGKHISGLEVMVTTGGTTLRDDILRLQN 149

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL+ TPGR++D  ++    ++   I+V+DEAD++L   F   I+++ + +P  RQ+L
Sbjct: 150 PVHVLVATPGRVVDLASKRTAKLDRCRIIVLDEADKLLSQEFTELIEDLYTYLPADRQSL 209

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++  ++ +L+NP  I +     T   +   +V  + +  +K   L  L  +
Sbjct: 210 LFSATFPVTVKDFADRYLRNPYEINL-MEELTLRGVTQYYV--FVEERQKIHCLNTLF-N 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q+ R ++  +F+EG  + +V 
Sbjct: 266 RLQINQSIIFCNSVNRVELLAKKITQLGYSCYYIHARMQQQHRNRVFHDFREGHCRNLVC 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A   V  +D  ++  IE
Sbjct: 326 SDLITRGIDIQAVNVVINFDFPKYAETYLHRIGRSGRFGHLGLAINFVTYDDRYNVYRIE 385

Query: 362 KLIEKKVDWLNGDL 375
           K ++  ++ + G++
Sbjct: 386 KELDTVINAIPGEI 399


>gi|302846090|ref|XP_002954582.1| hypothetical protein VOLCADRAFT_82854 [Volvox carteri f.
           nagariensis]
 gi|300260001|gb|EFJ44223.1| hypothetical protein VOLCADRAFT_82854 [Volvox carteri f.
           nagariensis]
          Length = 424

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 198/349 (56%), Gaps = 20/349 (5%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--EKGRAR---VRMPRTLILEP 80
           P+Q +    ++   DV   A+TG+GKT +F LP++  L  E G++R    R PR L+L P
Sbjct: 14  PVQAQVFEPIMNGRDVVCRAKTGSGKTLAFALPVVENLLEENGKSRPRKGRAPRCLVLAP 73

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TRELA QV+  FE    N  L V    GG+    Q + LE G DV++ TPGRI+D   RG
Sbjct: 74  TRELANQVSREFESVCPN--LKVDSFYGGVSISPQIRSLENGVDVVVGTPGRIIDLLERG 131

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TRQTLLFSATMTDELQKVSENF 198
            L ++NI   V+DEAD+MLDMGF   ++ I   +P    RQTLLFSAT+   ++ V++ +
Sbjct: 132 CLKLDNIRYAVLDEADQMLDMGFEQDMERILGAIPEGKERQTLLFSATLPKWVKSVAKRY 191

Query: 199 LQNPKRIEVNTPSST---AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG---IIFC 252
             NP  I++    +T   A+TI    +      ++K + LQ LL        G   IIF 
Sbjct: 192 QNNPLTIDLVGEENTGKLADTIR--LLVQQVDGAQKMSALQGLLAMYGNTAGGGKAIIFV 249

Query: 253 NQKKNVVNLCHSLEKQGFSVC-AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           N K     +  ++ +  F+ C A+HG+I Q  R K L+ F++G    +VA+D+AARGLDI
Sbjct: 250 NTKAKADEVNMAVNE--FASCDALHGDISQAQREKALALFRDGKYNCLVATDVAARGLDI 307

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           P V  V +FD+P   E ++HR GRTGRAG+ G A  L  + + + +  I
Sbjct: 308 PSVDLVAHFDLPQDNEAFLHRSGRTGRAGKTGTAVVLFTEREARSLALI 356


>gi|296220523|ref|XP_002756345.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Callithrix
           jacchus]
          Length = 711

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 205/353 (58%), Gaps = 17/353 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ+KT   V +  D+   A+TGTGKT SF +P++  
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 63  LEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ +  +   R P+ L+L PTRELA QVA +F+   +   L+VA   GG  +++Q   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   G+L ++ +  +V+DE D+MLD+GF   +++I      T  
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 179 ----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
               QTLLFSAT    + KV++ ++++  +++++        A T+EH  +A    +S++
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEH--LAIQCHWSQR 374

Query: 232 CALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A++  +LQ    +    IIFC  KKNV  +  +   +  + C +HG+I Q  R   L  
Sbjct: 375 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKG 433

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           F+EG+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 434 FREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 486


>gi|261201117|ref|XP_002626959.1| ATP-dependent RNA helicase DBP8 [Ajellomyces dermatitidis SLH14081]
 gi|239594031|gb|EEQ76612.1| ATP-dependent RNA helicase DBP8 [Ajellomyces dermatitidis SLH14081]
 gi|239607095|gb|EEQ84082.1| ATP-dependent RNA helicase DBP8 [Ajellomyces dermatitidis ER-3]
          Length = 553

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 137/384 (35%), Positives = 203/384 (52%), Gaps = 18/384 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL+P +V ++      +PT IQ   IP +++  D  G ++TG+GKT +F  P   
Sbjct: 122 SFASLGLAPWLVGSLSVMAIKRPTAIQKACIPEIIKGRDCIGGSRTGSGKTVAFAAP--- 178

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL+K          +IL PTRELA Q+ +  +      +L   L+ GG     Q   L +
Sbjct: 179 ILQKWAEDPFGVFAVILTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIALSQ 238

Query: 122 GADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSLV 174
              ++I TPGR+ DH           +N   ++V+DEADR+L  G    +P ++   S +
Sbjct: 239 RPHIVIATPGRLADHITSSGADTICGLNRTRVVVLDEADRLLASGPGSMLPDVETCLSAL 298

Query: 175 P--FTRQTLLFSATMTDELQ--KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY-- 228
           P   +RQTLLF+AT+T E++  K        P        +    TI      TY Q   
Sbjct: 299 PPSTSRQTLLFTATVTPEVRALKSMPRPANKPPIFVTEISTENQATIPPTLKQTYLQVPL 358

Query: 229 SKKCALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
           + + A L  LL ++ +  K  IIFCN+ K    L   L + G  V ++H  + Q  R   
Sbjct: 359 THREAFLHTLLSTEANAPKPSIIFCNRTKTADLLERMLRRLGHRVTSLHSLLPQSERTAN 418

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           LS F+    +++VA+D+AARGLDIP V  V NFDVP   ++Y+HR+GRT RAGR G+A T
Sbjct: 419 LSRFRASAARILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGREGEAVT 478

Query: 348 LVAKEDIKHIDAIEKLIEKK-VDW 370
           LV + D++ + AIE  + KK ++W
Sbjct: 479 LVGQRDVQLVLAIEDRVGKKMIEW 502


>gi|148379738|ref|YP_001254279.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153933390|ref|YP_001384035.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           ATCC 19397]
 gi|153934793|ref|YP_001387577.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           Hall]
 gi|148289222|emb|CAL83317.1| putative ATP-dependent RNA helicase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152929434|gb|ABS34934.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152930707|gb|ABS36206.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. Hall]
          Length = 421

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 113/362 (31%), Positives = 207/362 (57%), Gaps = 8/362 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L+PK+V  +       PT IQ + IPL ++  D+ G ++TGTGKT +++LP   I
Sbjct: 5   FDTLNLNPKLVQGLKKLNINIPTEIQAEAIPLAMENKDIIGQSETGTGKTLAYLLP---I 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA--LLIGGIPFEAQNKKLE 120
            EK     R  + +IL PT ELA Q+ +  +    N N+ V    +IG    + Q +KL+
Sbjct: 62  FEKITTEKREMQAIILAPTHELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ +PGRIL+   + K+  + ++ +VIDE D++LD   +  ++ +       RQ 
Sbjct: 122 EKPHIIVGSPGRILELIKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQL 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+T+    ++++ +++   ++V   ++  E I+H ++    ++ ++  +L++L+ 
Sbjct: 182 MLFSATITESTLNIAKDLMKDSVIVKVKEKNTVNENIKHLYIT--GEHRERIEILRKLIA 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +  K  I+F N+ + +      L+        I+G  ++  R K L +F+ G +Q++V
Sbjct: 240 ATNP-KRAIVFINRNEEIELTTLKLQYHKIKAYGIYGAAEKEQRKKALEDFRSGKVQILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +SDL+ARGLD+ DV H+FN D+P   + Y+HR+GRTGRA + G A +++ +++   I   
Sbjct: 299 SSDLSARGLDVKDVTHIFNLDLPENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRKY 358

Query: 361 EK 362
           EK
Sbjct: 359 EK 360


>gi|114630813|ref|XP_507824.2| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pan
           troglodytes]
          Length = 737

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 205/353 (58%), Gaps = 17/353 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ+KT   V +  D+   A+TGTGKT SF +P++  
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 63  LEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ +  +   R P+ L+L PTRELA QVA +F+   +   L+VA   GG  +++Q   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   G+L ++ +  +V+DE D+MLD+GF   +++I      T  
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 179 ----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
               QTLLFSAT    + KV++ ++++  +++++        A T+EH  +A    +S++
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEH--LAIQCHWSQR 374

Query: 232 CALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A++  +LQ    +    IIFC  KKNV  +  +   +  + C +HG+I Q  R   L  
Sbjct: 375 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKG 433

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           F+EG+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 434 FREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 486


>gi|333027865|ref|ZP_08455929.1| putative DEAD-box RNA helicase [Streptomyces sp. Tu6071]
 gi|332747717|gb|EGJ78158.1| putative DEAD-box RNA helicase [Streptomyces sp. Tu6071]
          Length = 554

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 123/350 (35%), Positives = 183/350 (52%), Gaps = 4/350 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +   ++  +   G   P PIQ  T+P  L   D+ G  +TG+GKT +F L +L  
Sbjct: 115 FEDLDMPEALLKTLAAQGVTTPFPIQAATLPNSLAGRDILGRGRTGSGKTLAFGLALLAR 174

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y  + NL +  ++GG+    Q   L RG
Sbjct: 175 TAGRRAEPRAPLGLVLVPTRELAQQVTDALTPYATSVNLRLTTVVGGLSLTKQANALRRG 234

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A++L+ TPGR+ D  +RG   + ++   V+DEAD+M DMGF+P +  + + V    QT+L
Sbjct: 235 AELLVATPGRLKDLIDRGDCTLQDVRTTVLDEADQMADMGFLPQVTRLLNQVEPEGQTML 294

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++  +FL +P    V+  +    T+EH  +   A  + K A+   +   +
Sbjct: 295 FSATLDANVDRLVRDFLDDPVVHSVDPSAGAVTTMEHHLL-YVADATVKRAVTHHIAARE 353

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F + K     L   L   G    A+HG   Q  R + L  FK G +  +VA+
Sbjct: 354 GRL---IMFVDTKHGADRLAKRLLADGVPAAALHGGRSQPQRTRTLDQFKNGQVTALVAT 410

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           ++AARG+ I  +  V N D P   ++Y+HR GRT RAG  G   TLV  E
Sbjct: 411 NVAARGIHIDALDLVVNVDPPVDHKDYLHRGGRTARAGESGSVVTLVLPE 460


>gi|332218196|ref|XP_003258245.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Nomascus
           leucogenys]
          Length = 737

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 205/353 (58%), Gaps = 17/353 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ+KT   V +  D+   A+TGTGKT SF +P++  
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 63  LEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ +  +   R P+ L+L PTRELA QVA +F+   +   L+VA   GG  +++Q   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   G+L ++ +  +V+DE D+MLD+GF   +++I      T  
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 179 ----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
               QTLLFSAT    + KV++ ++++  +++++        A T+EH  +A    +S++
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEH--LAIQCHWSQR 374

Query: 232 CALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A++  +LQ    +    IIFC  KKNV  +  +   +  + C +HG+I Q  R   L  
Sbjct: 375 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKG 433

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           F+EG+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 434 FREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 486


>gi|62857341|ref|NP_001016823.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Xenopus (Silurana)
           tropicalis]
 gi|89273979|emb|CAJ82187.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Xenopus (Silurana)
           tropicalis]
 gi|163916608|gb|AAI57773.1| hypothetical protein LOC549577 [Xenopus (Silurana) tropicalis]
          Length = 647

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 129/345 (37%), Positives = 205/345 (59%), Gaps = 16/345 (4%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           V  AGYVK TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L+ ++ +G    +   
Sbjct: 236 VTKAGYVKLTPVQKHSIPIILAGRDLMACAQTGSGKTAAFLLPILSHMMNEGITASQFLP 295

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKLERGADVLIC 128
              P+ +I+ PTREL  Q+  +  K+     +   ++ GGI P  A  + +ERG ++L  
Sbjct: 296 LQEPQAIIIAPTRELINQIYLDARKFSYGTCVRPVVVYGGIHPVHAM-RDVERGCNILCA 354

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI--TSLVPF--TRQTLLFS 184
           TPGR++D   R K+ ++ ++ LV+DEADRMLDMGF P ++N+  +  +P    RQTL+FS
Sbjct: 355 TPGRLMDIIGREKIGLSKLKYLVLDEADRMLDMGFAPVMENLIGSPGMPAKEERQTLMFS 414

Query: 185 ATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           AT   E+Q+++  FL++    + V         +E   +    +Y K+  L++ +LQS  
Sbjct: 415 ATYPAEIQRLASKFLKSDHLFVVVGLVGGACSDVEQTILEI-QEYRKRDKLVE-ILQSSG 472

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +  +IF N KK    +   L ++ F   +IHG+ +Q  R + + +F+ G   ++V + 
Sbjct: 473 NERT-MIFVNTKKKADVIAGYLCQEHFPTTSIHGDREQCQREEAIRDFRSGKCPVIVCTA 531

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +AARGLDI +V HV N+DVP   + Y+HRIGRTGR G  GKA + 
Sbjct: 532 VAARGLDIENVQHVINYDVPKEIDEYVHRIGRTGRCGNVGKATSF 576


>gi|13129006|ref|NP_076950.1| ATP-dependent RNA helicase DDX50 [Homo sapiens]
 gi|297686803|ref|XP_002820928.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Pongo abelii]
 gi|55976580|sp|Q9BQ39|DDX50_HUMAN RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD
           box protein 50; AltName: Full=Gu-beta; AltName:
           Full=Nucleolar protein Gu2
 gi|13540304|gb|AAK29402.1|AF334103_1 nucleolar protein GU2 [Homo sapiens]
 gi|12653021|gb|AAH00272.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
 gi|55664207|emb|CAH72376.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
 gi|119574689|gb|EAW54304.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
 gi|123983644|gb|ABM83473.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct]
 gi|123998165|gb|ABM86684.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct]
          Length = 737

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 205/353 (58%), Gaps = 17/353 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ+KT   V +  D+   A+TGTGKT SF +P++  
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 63  LEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ +  +   R P+ L+L PTRELA QVA +F+   +   L+VA   GG  +++Q   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   G+L ++ +  +V+DE D+MLD+GF   +++I      T  
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 179 ----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
               QTLLFSAT    + KV++ ++++  +++++        A T+EH  +A    +S++
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEH--LAIQCHWSQR 374

Query: 232 CALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A++  +LQ    +    IIFC  KKNV  +  +   +  + C +HG+I Q  R   L  
Sbjct: 375 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKG 433

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           F+EG+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 434 FREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 486


>gi|307331142|ref|ZP_07610269.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306883222|gb|EFN14281.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 507

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 122/347 (35%), Positives = 185/347 (53%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L +   ++ A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 71  FAELAMPSALLAALSAEGMSAPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 130

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y +   L +A ++GG+    Q+  L  G
Sbjct: 131 TAGQRAEPRQPLALVLVPTRELAQQVTDALTPYARPLKLRLATVVGGMSIGRQSSALRGG 190

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +V++ TPGR+ D   RG   +N ++I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 191 VEVVVATPGRLKDLIGRGDCRLNRVDITVLDEADQMADMGFMPQVTALLDQVRPEGQRML 250

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  +    T+EH  +  +   + K A   ++   +
Sbjct: 251 FSATLDRNVDLLVRRYLTDPVVHSVDPSAGAVTTMEHHVL--HVHGADKHATTTEIAARE 308

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F + K  V NL   L   G    A+HG   Q  R + L+ FK G + ++VA+
Sbjct: 309 G---RSIMFLDTKHAVDNLTKHLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVAT 365

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARG+ + ++  V N D P+  ++Y+HR GRT RAG  G   TLV
Sbjct: 366 NVAARGIHVDNLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTLV 412


>gi|328883512|emb|CCA56751.1| putative ATP-dependent RNA helicase [Streptomyces venezuelae ATCC
           10712]
          Length = 503

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 126/377 (33%), Positives = 196/377 (51%), Gaps = 12/377 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L  +++  +   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 77  FADLALDRRILATLTAEGVSVPFPIQGATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 136

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                A  R P  L+L PTRELA QV D    Y +   L +A ++GG+P   Q   L  G
Sbjct: 137 TAGQLAEPRQPLALVLVPTRELAQQVTDALTPYARAVKLRLATVVGGMPIGRQANALRNG 196

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +V++ TPGR+ D  +RG   +N + I V+DEAD+M DMGF+P +  + + V    Q +L
Sbjct: 197 VEVVVATPGRLKDLIDRGDCRLNQVAITVLDEADQMADMGFMPQVTALLNQVRPEGQRML 256

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+       T+EH  +  +          +Q L ++
Sbjct: 257 FSATLDRNVDLLVRRYLTDPVVHSVDPSQGAVTTMEHHVLHVHGAD-------KQRLTTE 309

Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++G  I+F + K  V  L   L + G    A+HG   Q  R + L+ FK G + ++V
Sbjct: 310 IAARDGRVIMFLDTKHAVDRLTEDLLRCGVRAAALHGGKSQPQRTRTLARFKTGHVTVLV 369

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA---KEDIKHI 357
           A+++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV    + D+  +
Sbjct: 370 ATNVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTANQRRDMTRL 429

Query: 358 DAIEKLIEKKVDWLNGD 374
            A   ++ +     +G+
Sbjct: 430 MAAAGIVPETTQVRSGE 446


>gi|322701035|gb|EFY92786.1| cell cycle control protein [Metarhizium acridum CQMa 102]
          Length = 397

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 213/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L  +++  V   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F    +++
Sbjct: 26  FDDMSLKAELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATF---SISV 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    V+  + LIL PTRELA Q+       G   N+     IGG       K L+ G
Sbjct: 83  LQKIDPTVKQCQALILAPTRELAQQIQKVVVAIGDFMNVECHACIGGTSVRDDMKALQDG 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + +++ V+DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 143 PQVVVGTPGRVHDMIQRRFLKTDAMKMFVLDEADEMLSRGFTDQIYDIFQLLPQSTQVVL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 203 LSATMPQDVLEVTTRFMRDPVRILVKKDELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 261

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A+
Sbjct: 262 -TITQAVIFCNTRRKVDWLTEKLTARDFTVSAMHGDMDQTQRDLIMKEFRSGSSRVLIAT 320

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  ED++ +  IE+
Sbjct: 321 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTAEDVRMMREIEQ 380

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 381 FYSTQIEEMPMNVADL 396


>gi|321464010|gb|EFX75021.1| hypothetical protein DAPPUDRAFT_306922 [Daphnia pulex]
          Length = 825

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/355 (36%), Positives = 201/355 (56%), Gaps = 9/355 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   V+  GY  PTPIQ K IPL++++ DV  +A+TG+GKTA F++P+   
Sbjct: 37  FQSMGLSYNVYHGVMKCGYKIPTPIQRKCIPLIMEKKDVVAMARTGSGKTACFLIPLFER 96

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+         R LI+ PTRELA Q      + GK   L  A ++GG   EAQ   +   
Sbjct: 97  LQA--HSTIGTRALIMSPTRELALQTLKFTRELGKFTGLKAATILGGDSMEAQFAAMHEI 154

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR        +L +  IE +V DEADR+ +MGF   +  I + +P  RQTLL
Sbjct: 155 PDIIIATPGRFAHLCVEMELKLKEIEYVVFDEADRLFEMGFGEQLLEILNRLPELRQTLL 214

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L   ++  L +P  + ++  S   E ++  FV  +     K ++L  LL  +
Sbjct: 215 FSATLPKLLVDFTKAGLTDPVLVRLDVDSKLPEALKLGFV--FCPCESKASVLLHLL--R 270

Query: 243 DTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +K+G   ++F     +V  L   L+K G S   I+ ++DQ +R    + F+     +M
Sbjct: 271 NAVKSGELTLVFAATMHHVEYLHLLLDKAGISNTYIYSSLDQAARKIHAAKFQTKQTHVM 330

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           + +D+AARG+DIP + +V N++ P +A+ ++HR+GR  RAGR G A++LVA +++
Sbjct: 331 ITTDVAARGIDIPLLDNVINYNFPAKAKLFVHRVGRVARAGRSGCAYSLVALDEL 385


>gi|212638706|ref|YP_002315226.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
 gi|212560186|gb|ACJ33241.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
          Length = 426

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/377 (34%), Positives = 206/377 (54%), Gaps = 13/377 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ A+    + KPTPIQ + IP VL+   V G +QTGTGKT +++LP   I
Sbjct: 2   FERFSFHPFIIEAIEHLKFHKPTPIQERVIPAVLRGESVIGQSQTGTGKTHAYLLP---I 58

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           +++   RV   + +I  PTRELA Q+     K  K    ++ +T    +GG       +K
Sbjct: 59  IQRIDPRVAEVQAVITAPTRELATQIYHEVLKITKFCPNDHRITARCFVGGTDKLRSIEK 118

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+    ++I TPGRI D      L ++   +LV+DEAD MLDMGFI  +  +   +P   
Sbjct: 119 LKTQPHLVIGTPGRIDDLVREQALFVHTARMLVVDEADVMLDMGFIADVDRVAGRMPEDL 178

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+   + ++++P  I +      A TIEH  +    ++  +  LL  +
Sbjct: 179 QMLVFSATIPEKLKPFLKKYMEHPTHIHIAPKQIAAPTIEHILIPL--RHRDRLQLLHDV 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S +     ++F N +K    + + L  +G  V  +HG++  R R K++   ++   Q 
Sbjct: 237 LVSYNPYL-ALVFVNTRKTADEVANGLIDKGLKVGVLHGDLSPRERKKMMKAIRDLQFQY 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N+++P+  + Y+HR GRTGRAG  G A T+    D     
Sbjct: 296 IVATDLAARGIDIEGVSHVINYELPSDLDFYVHRAGRTGRAGYKGVAATIYETSDQY--- 352

Query: 359 AIEKLIEKKVDWLNGDL 375
           A+ KL +K + +L+ DL
Sbjct: 353 ALVKLEKKGIQFLHRDL 369


>gi|149241448|ref|XP_001526316.1| hypothetical protein LELG_02874 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152013474|sp|A5DZT7|DBP10_LODEL RecName: Full=ATP-dependent RNA helicase DBP10
 gi|146450439|gb|EDK44695.1| hypothetical protein LELG_02874 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 948

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/422 (30%), Positives = 218/422 (51%), Gaps = 61/422 (14%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G S  ++  +   GY +PTPIQ ++IPL++   DV G+A+TG+GKTA+FVLP++  
Sbjct: 123 FASFGFSKFLLANIAKKGYKQPTPIQRRSIPLIIDNRDVVGMARTGSGKTAAFVLPLIEK 182

Query: 63  LEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L     ++R P   R +IL P+RELA Q     +++    NL   +LIGG   E    K+
Sbjct: 183 L-----KLRSPSGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGGDSLEEDFGKM 237

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++CTPGR L      +  + +++ +V DEADR+ +MGF   +  +   +P  RQ
Sbjct: 238 MTKPDIIVCTPGRFLHLKVEMQYDLMSVQYIVFDEADRLFEMGFAEQLNELLLALPSNRQ 297

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF------------------ 221
           +LLFSAT+   L + ++  L NP  + ++  S  +E ++  +                  
Sbjct: 298 SLLFSATLPRSLVEFAKAGLTNPVLVRLDADSKLSENLQMAYFTTKRNEREANLLYILQE 357

Query: 222 -----VATYAQYSKKCALLQQLLQSQD------------------------------TMK 246
                + T  +  K  A+ ++ ++S +                              + K
Sbjct: 358 VIKMPLGTPEEVKKLAAMDKRSIESDEENEEAKEQNNGKKRKYKFKKERMPSAKELPSEK 417

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + IIF   K +V  +   L+  G+ V  I+G +DQ +R   L  F+ G  +++V +D+AA
Sbjct: 418 STIIFVPTKHHVEYVTSLLKDAGYLVSYIYGTLDQHARKNQLYLFRIGLTKILVVTDVAA 477

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RG+DIP + +V NF +P  ++ +IHR+GRT RAG  G A+++V   ++ ++  +E  + K
Sbjct: 478 RGIDIPVLANVINFTLPGSSKIFIHRVGRTARAGNKGWAYSIVNSSELPYLLDLEIFLGK 537

Query: 367 KV 368
           K+
Sbjct: 538 KL 539


>gi|162661036|gb|EDQ48640.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 397

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 111/296 (37%), Positives = 172/296 (58%), Gaps = 5/296 (1%)

Query: 76  LILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
           L+L PTRELA QV     +  +   N+ V  L GG+P   QN  LE GA V++ TPGR++
Sbjct: 12  LVLCPTRELADQVTTEIRRLARAEDNVKVVTLSGGVPLRGQNASLENGAHVIVGTPGRVI 71

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           DH +RG L ++++  LV+DEADRMLDMGF+  I  +    P  RQTLLFSAT  + + K+
Sbjct: 72  DHLDRGNLNLDSLNTLVLDEADRMLDMGFVDDIAKVAKQCPPQRQTLLFSATYPEGIAKL 131

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           +  F+++P  ++V    S  +  +  +     +     A L +  + + T+     FCN 
Sbjct: 132 AARFMRDPVTVKVAAQHSGEQIEQRWYEVDKEERLPSVARLLEHFRPESTLA----FCNT 187

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K     L   L+ QG+S   +HG+++QR R ++L  F  G+  ++VA+D+AARGLD+ ++
Sbjct: 188 KARCRALAELLQAQGYSALELHGDLEQRDRDQVLVRFVNGSCSVLVATDVAARGLDVTNL 247

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           G V N D+    E ++HRIGRTGRAG+ G A +L   +++  +  IE++      W
Sbjct: 248 GAVINVDITPDPEVHVHRIGRTGRAGQKGLALSLATMDEMGAVGNIEQMQGSPSVW 303


>gi|146197863|dbj|BAF57642.1| nucleolar RNA helicase II/Gu protein [Dugesia japonica]
          Length = 627

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 131/355 (36%), Positives = 195/355 (54%), Gaps = 23/355 (6%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK----GRARVRMPRTLILEPT 81
           PIQIKT   +    DV   A+TGTGKT +F LP+LT LE     G    R P+ +++ PT
Sbjct: 69  PIQIKTFHHIHTGKDVIAQAKTGTGKTFAFALPVLTKLENSGIDGLKSGRKPKVIVMAPT 128

Query: 82  RELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGK 141
           REL +Q+A +FE    + NL V  + GG+ +E Q   L+ G D++   PGR+ D  N+G 
Sbjct: 129 RELVSQIASDFESL-ISKNLKVLSIYGGVSYEKQTTALKNGVDIIAGAPGRVRDLINKGH 187

Query: 142 LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR------QTLLFSATMTDELQKVS 195
           L ++ IE +++DE DRMLDMGF   ++ I S +  +       QTLLFSATM + +  + 
Sbjct: 188 LDLSKIEYVILDEVDRMLDMGFSDIVEEILSYIYPSETDKKGPQTLLFSATMPNWIHNIV 247

Query: 196 ENFLQNPKRIEV----NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG--I 249
           + +L+ P  I+V       S  A T+EH  +A    + ++   +  +++          I
Sbjct: 248 KKYLK-PDAIKVCLIDENGSKAASTVEH--LAIQCPWRERAGTIPDIIRVHGGGNQARCI 304

Query: 250 IFCNQKKNVVNLC-HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           IFC +KK+   L  HS  K    V  +HG++ Q  R  +L  F+EG   ++V +++AARG
Sbjct: 305 IFCERKKDADELASHSAMKSDCHV--LHGDVPQEKRELVLKKFREGKYSVLVTTNVAARG 362

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           LD+PD+  V     P   E+YIHR GRTGRAGR G        ++   +  +EKL
Sbjct: 363 LDVPDIDLVIQCHPPKDVEDYIHRSGRTGRAGRKGVCICFYEPKEKYDLQKVEKL 417


>gi|109079956|ref|XP_001092587.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 isoform 3
           [Macaca mulatta]
          Length = 622

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/361 (36%), Positives = 196/361 (54%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 183 FKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 242

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 243 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMS 302

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I 
Sbjct: 303 VKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF 362

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + +N   + A +++   V    +Y K+
Sbjct: 363 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKE 417

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  D   R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDHEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 K 351
           K
Sbjct: 538 K 538


>gi|329663131|ref|NP_001192982.1| ATP-dependent RNA helicase DDX50 [Bos taurus]
 gi|297491479|ref|XP_002698910.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Bos taurus]
 gi|296472173|gb|DAA14288.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Bos taurus]
          Length = 737

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 205/353 (58%), Gaps = 17/353 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ+KT   V +  D+   A+TGTGKT SF +P++  
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 63  LEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ +  +   R P+ L+L PTRELA QVA +F+   +   L+VA   GG  +++Q   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDVTRK--LSVACFYGGTSYQSQINHI 256

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   G+L ++ +  +V+DE D+MLD+GF   +++I      T  
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDILHESYKTDS 316

Query: 179 ----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
               QTLLFSAT    + KV++ ++++  +++++        A T+EH  +A    +S++
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEH--LAIQCHWSQR 374

Query: 232 CALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A++  +LQ    +    IIFC  KKNV  +  +   +  + C +HG+I Q  R   L  
Sbjct: 375 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKG 433

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           F+EG+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 434 FREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 486


>gi|157876896|ref|XP_001686790.1| DEAD box RNA helicase [Leishmania major strain Friedlin]
 gi|68129865|emb|CAJ09171.1| putative DEAD box RNA helicase [Leishmania major strain Friedlin]
          Length = 573

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 133/383 (34%), Positives = 213/383 (55%), Gaps = 18/383 (4%)

Query: 2   DFADLGLSPKVVCA-VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +F  L   P+ + A +L  G+  PTPIQ ++  +VL   D+ G+A+TG+GKT +F++P L
Sbjct: 106 EFDMLTAVPQYLKAKLLAQGFTAPTPIQAQSWSIVLSGRDLVGVAKTGSGKTLAFIVPAL 165

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               L++       P  ++L PTRELA Q+     K     ++    + GG P   Q   
Sbjct: 166 AHIALQEPLKVGDGPMVIVLAPTRELAQQIEQEAIKVLPQ-SIRCGCIYGGAPKGPQLGL 224

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G  +L+ TPGR++D     ++ +  +  LV+DEADRMLDMGF P ++ I   +   R
Sbjct: 225 LRQGVHILVATPGRLIDFMEIKRVNLLRVTYLVMDEADRMLDMGFEPQVRAICGQIRPDR 284

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYSKKCALLQ 236
           QTL+FSAT   E+Q ++ +F +N  RI V +    A  +  +H  + + A    K   L+
Sbjct: 285 QTLMFSATWPREIQNLAASFQKNWVRINVGSMELLANKDVTQHFILTSEA---AKLDELK 341

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L++     +  +IFC  KK    L   L++ G    AIHG+ +QR R  IL  F++   
Sbjct: 342 RLIERHRNQRV-LIFCKTKKTADYLEFQLKRNGVDCMAIHGDKEQRQREFILERFRKDPR 400

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED--- 353
             +VA+D+AARGLDI ++  V N+D P + ++Y+HRIGRTGRAG  G +FT++ K +   
Sbjct: 401 LCVVATDVAARGLDIKELETVVNYDFPMQIDDYVHRIGRTGRAGAKGASFTMITKHETQL 460

Query: 354 -----IKHIDAIEKLIEKKVDWL 371
                 + ++ +E+  ++   WL
Sbjct: 461 NASTVFQLVELVERAGQEVPGWL 483


>gi|16197947|gb|AAL13744.1| LD21880p [Drosophila melanogaster]
          Length = 680

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/416 (31%), Positives = 221/416 (53%), Gaps = 24/416 (5%)

Query: 39  HDVCGIAQTGTGKTASFVLPMLT------ILEKGRARVRMPRTLILEPTRELAAQVADNF 92
            D+ GIA+TG+GKT +F+LPM         +E G   +     +I+ PTREL  Q+  + 
Sbjct: 4   RDLIGIAKTGSGKTLAFILPMFRHILDQPSMEDGDGAI----AIIMAPTRELCMQIGKDI 59

Query: 93  EKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF--NRGKLL-MNNIEI 149
            K+ K+  L    + GG     Q  +L+RGA++++CTPGR++D    N G++  +  +  
Sbjct: 60  RKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTY 119

Query: 150 LVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT 209
           +V+DEADRM DMGF P +  I   V   RQT++FSAT   +++ ++   L+ P  + V  
Sbjct: 120 VVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILKKPIEVIVGG 179

Query: 210 PSSTAETIEHCFVATY--AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
            S   + +E   V     A++ K    L +LL       + I+F ++++N   L   L K
Sbjct: 180 RSVVCKEVEQHVVILNDDAKFFK----LLELLGIYQEAGSIIVFVDKQENADILLRDLMK 235

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
             +   ++HG IDQ  R   + +FK G ++L++A+ +AARGLD+ D+  V N+DVPN  E
Sbjct: 236 ASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYE 295

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
           +Y+HR GRTGRAG+ G A+T +  E  ++   I + ++     +  +L +L    + +  
Sbjct: 296 DYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSGTLIPAELQALWTEYKALQE 355

Query: 388 AQHNHARKNNPIPQKSTGFDRRKKNYSS-----QKSHIPLKESEKISKLQQDIQEN 438
           A+            K   FD ++ N +      QK+ + L +S+    ++QDI + 
Sbjct: 356 AEGKTVHTGGGFSGKGFKFDEQEFNAAKESKKLQKAALGLADSDDEEDIEQDIDQQ 411


>gi|227549310|ref|ZP_03979359.1| possible ATP-dependent RNA helicase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078629|gb|EEI16592.1| possible ATP-dependent RNA helicase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 430

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 124/355 (34%), Positives = 187/355 (52%), Gaps = 4/355 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   +V  +   G  +P PIQ + IP  L   DV G   TG+GKT +F LPML  
Sbjct: 4   FADLGLPRPIVNVLAKQGITQPFPIQEEAIPDALAGRDVLGRGPTGSGKTFTFGLPMLAR 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L    ++   PR LIL PTRELA Q+ +  +       L +  ++GG+      + L   
Sbjct: 64  LAGAPSKPGHPRGLILAPTRELATQIRERLDDLAAALGLRLLDVVGGVNINNHLRSLAAP 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVL+ TPGR  D  ++ KL  +++EI  +DEAD+M DMGF+P ++ +    P   Q LL
Sbjct: 124 VDVLVATPGRAEDLISQRKLFFDHVEITALDEADQMADMGFLPQVRKLLDRTPKGGQRLL 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +++K+   ++ +P         ++  T+EH  +    + ++   +L    +  
Sbjct: 184 FSATLDGDVEKLIARYMSDPVTHSTAPVQASVNTMEHYRLLVGDRDARSDVVLHIGAREG 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T    I+F   K  V      L + G +   +HG+  Q +R + L  F +GT  ++VA+
Sbjct: 244 KT----IMFMRTKHGVDRQVKKLRRAGINAQGLHGDKGQGARTRALEGFGDGTAPVLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           D+AARG+D+ DV  V + D P   + Y+HR GRT RAG  G   TLV  E  K +
Sbjct: 300 DIAARGIDVDDVSLVVHVDPPAEHKAYLHRAGRTARAGSSGTVVTLVLDEQEKEV 354


>gi|169869158|ref|XP_001841147.1| ATP-dependent RNA helicase eIF4A [Coprinopsis cinerea okayama7#130]
 gi|116497789|gb|EAU80684.1| ATP-dependent RNA helicase eIF4A [Coprinopsis cinerea okayama7#130]
          Length = 397

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 207/368 (56%), Gaps = 5/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L P ++  +   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F    ++
Sbjct: 25  NFDNMDLKPDLLRGIYAYGFERPSAIQQRAIVPVVKGHDVIAQAQSGTGKTATF---SIS 81

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    ++  + LIL PTRELA Q+       G   N+     +GG        KL+ 
Sbjct: 82  ILQQLDMSIKGTQALILAPTRELAQQIQKVVIALGDYMNIECHACVGGTNVREDMAKLQE 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR     ++I+I  +DEAD ML  GF   I ++  L+P   Q +
Sbjct: 142 GVHVVVGTPGRVYDMINRRAFRTDHIKIFCLDEADEMLSRGFKDQIYDVFQLLPQDTQVV 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+ +V++ F+++P RI V     T E I+  ++A   +  K   L    L  
Sbjct: 202 LLSATMPAEVLEVTKKFMRDPVRILVKRDELTLEGIKQFYIAVEKEEWKLDTLCD--LYE 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   +  + F+V A+HG+++Q+ R  ++  F+ G+ ++++ 
Sbjct: 260 TVTITQAVIFCNTRRKVDWLTEKMHAREFTVSAMHGDMEQKQREVLMKEFRSGSSRVLIT 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  ED++ +  IE
Sbjct: 320 TDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTTEDVRMLRDIE 379

Query: 362 KLIEKKVD 369
           +    ++D
Sbjct: 380 QFYNTQID 387


>gi|302850370|ref|XP_002956712.1| hypothetical protein VOLCADRAFT_77220 [Volvox carteri f.
           nagariensis]
 gi|300257927|gb|EFJ42169.1| hypothetical protein VOLCADRAFT_77220 [Volvox carteri f.
           nagariensis]
          Length = 648

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/360 (35%), Positives = 199/360 (55%), Gaps = 15/360 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD+ L P V+  +   G  KPT IQ++ +P+ L   D+ GIA TG+GKT  F LPM+ I
Sbjct: 201 FADMKLPPAVLRVLAGKGIKKPTQIQMQGLPVALSGRDMIGIASTGSGKTLVFALPMVLI 260

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+ +     P  +++ P+RELA Q  +  + Y K         +   L IGGI 
Sbjct: 261 ALQEEMRMPLGQNEGPIGMVICPSRELATQTYEIADMYCKALGADRYPEIRAMLCIGGID 320

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD-MGFIPYIQNI 170
            +   + + RG   ++ TPGR+ D  ++ ++ ++    L +DEADRM+D +GF   +++I
Sbjct: 321 AKPMYETIRRGVHAVVATPGRLKDLLHKRRMNLDVCRFLCLDEADRMVDQVGFEDDVRDI 380

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTL+FSATM  +++  +E+ L +P  +  +T  +      +  V    +Y K
Sbjct: 381 LSFFRGQRQTLMFSATMPAKIKAFAESALVDPLLVRFHT--AAVWCAANMDVIQEVEYVK 438

Query: 231 KCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A L  LL+  Q T    +IF   K++V  +   L  QG    A+HG+  Q  R   + 
Sbjct: 439 EEAKLPYLLECLQKTAPPVLIFAENKRDVDAIHEYLMVQGVEAVAVHGDKAQEDRHAAIH 498

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T +
Sbjct: 499 QFKAGEKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRCGKTGVATTFI 558


>gi|321479275|gb|EFX90231.1| hypothetical protein DAPPUDRAFT_190268 [Daphnia pulex]
          Length = 623

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 204/367 (55%), Gaps = 29/367 (7%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-----PR 74
           G  +P+PIQI+ +P VL   D+ GIA TG+GKT  FVLP++    +   ++       P 
Sbjct: 201 GIKQPSPIQIQGLPTVLSGRDMIGIAFTGSGKTLVFVLPIVVFSLEQELKMPFLPNEGPF 260

Query: 75  TLILEPTRELAAQVADNFEKYGKNY------NLTVALLIGGIPFEAQNKKLERGADVLIC 128
            LI+ P+RELA Q+ +  E +           +   L+IGG P     + + RG  +++ 
Sbjct: 261 GLIVCPSRELAKQILETVEHFADCLAQQGMPRIKSCLIIGGTPVNQSLEIINRGVHIIVA 320

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR++D  ++  + ++    L +DEADRM+DMGF   I+ I S     RQTLLFSATM 
Sbjct: 321 TPGRLMDMLDKKMIKLDVCRYLCMDEADRMIDMGFEEDIRTIFSYFKGQRQTLLFSATMP 380

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS-QDTMKN 247
            ++Q  + + L  P  I +N   + A ++    V    +Y  + A +  LL+  Q T   
Sbjct: 381 KKIQNFARSALVKP--ITINVGRAGAASMN---VVQEVEYVNQEAKIVHLLECIQKTQPP 435

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            +IF  +K++V  +   L  +G    AIHG+ DQ  R + +  F++G   ++VA+D+A++
Sbjct: 436 VLIFAEKKQDVDAIHEYLLLKGIEAVAIHGSKDQEERSRAVDAFRQGIKDVLVATDVASK 495

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-------DIKHIDAI 360
           GLD  ++ HV N+D+P+  ENY+HRIGRTGR+G  G+A T + K        D+KH+   
Sbjct: 496 GLDFVNIQHVINYDMPDDIENYVHRIGRTGRSGNKGQATTFINKSNEESVLLDLKHL--- 552

Query: 361 EKLIEKK 367
             LIE K
Sbjct: 553 --LIEAK 557


>gi|81427999|ref|YP_394998.1| putative ATP-dependent DNA/RNA helicase [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78609640|emb|CAI54686.1| Putative ATP-dependent DNA/RNA helicase [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 451

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/368 (36%), Positives = 201/368 (54%), Gaps = 16/368 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L P+++ A+ +  + KPT +Q + IP +     V G +QTG+GKT +F+LP+L  
Sbjct: 5   FTQFNLKPEIITALDEMHFTKPTAVQRRVIPAINAGKSVIGQSQTGSGKTHAFLLPLLNK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKLE 120
           L   +  V++   +I  P+RELA Q+    E   K+ N  + +   +GG   + Q +KL+
Sbjct: 65  LVPEKDEVQI---VITAPSRELAYQIYTAAELITKHMNGDIRIGRYVGGTDKQRQIEKLQ 121

Query: 121 R-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    ++I TPGRILD      L +   + LVIDEAD  LDMGF+  + NI S +P   Q
Sbjct: 122 QHQPQIVIGTPGRILDLITSKALKIYTAKTLVIDEADMTLDMGFLKPVDNIASRLPEDLQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++FSAT+ D+LQ   + ++ NP   EV   +  + TIE+  V T      K   L Q +
Sbjct: 182 MMVFSATIPDKLQPFLQKYMHNPVIEEVKNETIISPTIENWLVPT------KGKALNQTI 235

Query: 240 QSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            S  TM +    +IF N K  V ++ H L+ QG  V  IHG+I  R R +I+        
Sbjct: 236 YSLITMGHPFMVLIFANTKSKVDDIHHYLQSQGLKVAKIHGDIPPRQRKRIMKEVHNLDY 295

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNR-AENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           Q +VA+DLAARG+DI  +  V N +VP    E ++HR+GRTGR G  G A TL   +D +
Sbjct: 296 QYVVATDLAARGIDIEGISMVINAEVPREDLEFFVHRVGRTGRNGLKGTAITLYGPDDEQ 355

Query: 356 HIDAIEKL 363
            +  IE +
Sbjct: 356 AVAQIEAM 363


>gi|302854756|ref|XP_002958883.1| eukaryotic initiation factor [Volvox carteri f. nagariensis]
 gi|300255785|gb|EFJ40071.1| eukaryotic initiation factor [Volvox carteri f. nagariensis]
          Length = 400

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 201/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   G+ KP+ IQ + +  ++Q  DV   AQ+GTGK++   +    +
Sbjct: 29  FDSMGLKEELLRGLYAYGFEKPSAIQQRAVLPIVQGRDVIAQAQSGTGKSSMISVSTCQL 88

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     +R  + LIL PTRELA Q        G   N+     IGG       +KL+ G
Sbjct: 89  VD---VTLRECQVLILSPTRELAQQTEKVILAVGDFMNIQAHACIGGKSLGEDIRKLDSG 145

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I+ L++DEAD ML   F   I +I   +P   Q +L
Sbjct: 146 VHVVSGTPGRVFDMIQRRNLRTRHIKTLILDEADEMLAKNFKDQIYDIYRYLPPETQVVL 205

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P R+ V     T E I+  FVA   +   +   C L   L 
Sbjct: 206 VSATLPAEVLEMTNKFMTDPIRVLVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 264

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 265 ----TITQAVIFCNTKRKVDWLTEKMRQNNFTVASMHGDMVQKEREAIMGEFRSGAARVL 320

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 321 ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDIRILRD 380

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 381 IEQYYSTQIDEMPMNVAEL 399


>gi|242767802|ref|XP_002341440.1| DEAD/DEAH box RNA helicase [Talaromyces stipitatus ATCC 10500]
 gi|218724636|gb|EED24053.1| DEAD/DEAH box RNA helicase [Talaromyces stipitatus ATCC 10500]
          Length = 1175

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/375 (34%), Positives = 207/375 (55%), Gaps = 10/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + ++  GL  + +  +   GY  PT IQ + +P ++   DV G+A+TG+GKT SF+LPM 
Sbjct: 542 LKWSQCGLGVQTLDVISKLGYENPTSIQSQALPAIMSGRDVIGVAKTGSGKTISFLLPMF 601

Query: 61  TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             ++       M  P  LI+ PTRELA Q+  + + + K  NL      GG P + Q  +
Sbjct: 602 RHIKDQHPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAE 661

Query: 119 LERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           L+RGA++++CTPGR++D    N G++  +  +  +V+DEADRM DMGF P +  I + + 
Sbjct: 662 LKRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIR 721

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +QT+LFSAT    ++ ++   L  P  I V   S  A  I    V    + +K   LL
Sbjct: 722 PNKQTVLFSATFPRNMEALARKTLNKPVEIIVGGRSVVAPEITQ-IVEVRNENTKFLRLL 780

Query: 236 QQLLQSQDTMKN----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
           + L        N     +IF ++++   +L   L ++G+   +IHG  DQ  R   +++F
Sbjct: 781 ELLGNLYSDEANEDARTLIFVDRQEAADSLLRELMRKGYPCMSIHGGKDQIDRDSTIADF 840

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + +
Sbjct: 841 KAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTE 900

Query: 352 EDIKHIDAIEKLIEK 366
           +  ++   I K +++
Sbjct: 901 DQERYSVDIAKALKQ 915


>gi|322706990|gb|EFY98569.1| DEAD-box helicases & Helicase superfamily domain-containing protein
           [Metarhizium anisopliae ARSEF 23]
          Length = 397

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 213/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L  +++  V   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F    +++
Sbjct: 26  FDDMSLKAELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATF---SISV 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    V+  + LIL PTRELA Q+       G   N+     IGG       K L+ G
Sbjct: 83  LQKIDPTVKQCQALILAPTRELAQQIQKVVVAIGDFMNVECHACIGGTSVRDDMKALQDG 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + +++ V+DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 143 PQVVVGTPGRVHDMIQRRFLKTDAMKMFVLDEADEMLSRGFTDQIYDIFQLLPQSTQVVL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 203 LSATMPQDVLEVTTRFMRDPVRILVKKDELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 261

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A+
Sbjct: 262 -TITQAVIFCNTRRKVDWLTEKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIAT 320

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  ED++ +  IE+
Sbjct: 321 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTAEDVRMMREIEQ 380

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 381 FYSTQIEEMPMNVADL 396


>gi|194017773|ref|ZP_03056383.1| dead/deah box helicase domain protein [Bacillus pumilus ATCC 7061]
 gi|194010673|gb|EDW20245.1| dead/deah box helicase domain protein [Bacillus pumilus ATCC 7061]
          Length = 439

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 133/383 (34%), Positives = 205/383 (53%), Gaps = 17/383 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ A+ + G+ +PT IQ + IP VL+   V G +QTGTGKT +++LP++  
Sbjct: 6   FTTYELKSFIIDAIHELGFYEPTDIQKRIIPAVLKGESVIGQSQTGTGKTHAYLLPLIHS 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADN----FEKYGKNYNLTVALLIGGIPFEAQNKK 118
           ++  +  V++   +I  PTRELA Q+        +K      +   L IGG   +   +K
Sbjct: 66  IDPSKEHVQV---VITAPTRELANQIFKEAQTILKKASPEEEIKAKLYIGGTDKQKSIQK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+    +++ TPGRI D  +   L +     LVIDEAD MLDMGF+  +  I S +P   
Sbjct: 123 LKNQPHLVVGTPGRIADLIHEQALNVYKATSLVIDEADLMLDMGFLEDVDRIGSQMPEQL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+   + ++ NPK   V     TAE I+H  V +  +   K  LL ++
Sbjct: 183 QMLVFSATIPEKLKPFLKKYMDNPKYAHVEPKRITAENIQHILVPS--KQRDKLKLLHEM 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +      GIIF N K  V  +   L+++G  V  +HG +  R R K++    +     
Sbjct: 241 VTNVQPYL-GIIFANTKTTVDEIASFLQEKGMKVGVLHGGLTPRERKKVMKQIDDLEFTY 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARG+DI  V HV N+++P+  + Y+HR+GRT RAG  G A T+    D   + 
Sbjct: 300 IVASDLAARGIDIKGVSHVINYELPSDLDFYVHRVGRTARAGSSGIAMTIYELADEDALI 359

Query: 359 AIEKL---IEKKV----DWLNGD 374
            IEK+    E K     +W + D
Sbjct: 360 QIEKMGVVFENKTIVHGEWRDAD 382


>gi|27371129|gb|AAH23303.1| Ddx10 protein [Mus musculus]
          Length = 681

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 212/376 (56%), Gaps = 20/376 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P+L  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 63  LEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     R++   T     LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +
Sbjct: 131 L----YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE 186

Query: 118 KLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++    ++L+CTPGR+L H +        N+++LV+DEADR+LDMGF   +  I   +P 
Sbjct: 187 RIN-NINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPK 245

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCAL 234
            RQTLLFSAT T  ++ ++   L++P+ + V+  +  ST  T+E  ++    +  +K ++
Sbjct: 246 KRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYI--ICELHQKISV 303

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL--EKQGFSVCAIHGNIDQRSRMKILSNFK 292
           L   L+S    K  I+F +  K V  L       + G S+ A+HG   Q  RM++ + F 
Sbjct: 304 LFSFLRSH-LKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFV 362

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                ++ A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   
Sbjct: 363 RKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPS 422

Query: 353 DIKHIDAIEKLIEKKV 368
           + + +  +++L++KKV
Sbjct: 423 EEQGM--VQQLLQKKV 436


>gi|50054446|ref|NP_001001910.1| probable ATP-dependent RNA helicase DDX4 [Sus scrofa]
 gi|51315697|sp|Q6GWX0|DDX4_PIG RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog;
           AltName: Full=Vasa-like protein
 gi|48727699|gb|AAT46129.1| VASA-like protein [Sus scrofa]
          Length = 722

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 126/353 (35%), Positives = 198/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 301 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKE 360

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 361 LQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 420

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 421 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 480

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   +    QYSK+  LL+ L    D 
Sbjct: 481 TFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQADLQV-GQYSKREKLLEILRNIGD- 538

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 539 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 597

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 598 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHL 650


>gi|71650885|ref|XP_814131.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70879078|gb|EAN92280.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 406

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 207/374 (55%), Gaps = 8/374 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + GL  ++   + + G+ +P+P+Q + IP+ LQ  DV   A+ GTGKTASFV+P   +
Sbjct: 33  FEEYGLRRELQMGIFEKGFERPSPVQEEAIPVALQGKDVLARAKNGTGKTASFVIP---V 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           LEK   R    + L++ PTRELA Q A   ++ GK+ + L V +  GG        +L+ 
Sbjct: 90  LEKVDTREPHIQALLMVPTRELALQTAQVTKELGKHISGLEVMVTTGGTTLRDDILRLQN 149

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL+ TPGR++D  ++    ++   I+V+DEAD++L   F   I+++ + +P  RQ+L
Sbjct: 150 PVHVLVATPGRVVDLASKRTAKLDRCRIIVLDEADKLLSQEFTELIEDLYTYLPADRQSL 209

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++  ++ +L+NP  I +     T   +   +V  + +  +K   L  L  +
Sbjct: 210 LFSATFPVTVKDFADRYLRNPYEINL-MEELTLRGVTQYYV--FVEERQKIHCLNTLF-N 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q+ R ++  +F+EG  + +V 
Sbjct: 266 RLQINQSIIFCNSVNRVELLAKKITQLGYSCYYIHARMQQQHRNRVFHDFREGHCRNLVC 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A   V  +D  ++  IE
Sbjct: 326 SDLITRGIDIQAVNVVINFDFPKYAETYLHRIGRSGRFGHLGLAINFVTYDDRYNVYRIE 385

Query: 362 KLIEKKVDWLNGDL 375
           K ++  ++ + G++
Sbjct: 386 KELDTVINAIPGEI 399


>gi|229098758|ref|ZP_04229696.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-29]
 gi|229104916|ref|ZP_04235573.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-28]
 gi|228678490|gb|EEL32710.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-28]
 gi|228684602|gb|EEL38542.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-29]
          Length = 436

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 213/378 (56%), Gaps = 14/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ A+ +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L  
Sbjct: 6   FTQYDFKPFLIDAIRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           +   R  V++   +I  PTRELA Q+ +   K  K    +  +T   LIGG   +   +K
Sbjct: 66  INPSREEVQL---VITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   +++ TPGRI D      L +   + +++DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LKKQPHIVVGTPGRIKDLVEEKALFVYKADTIIVDEADLMLDMGFIQDVDKIAARMPKNL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ- 237
           Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +  ++  K  L++  
Sbjct: 183 QMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPS--RHRNKIELVKNM 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ +  +   I+F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 241 LLQFKPYL--AIVFTNTKKKADEVADGLAERGLKVGRIHGDLSPRDRKKMMKQVRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|322490800|emb|CBZ26064.1| putative DEAD box RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 571

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 207/368 (56%), Gaps = 17/368 (4%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--ILEKGRARVRMP 73
           +L+ G+  PTPIQ ++  +VL   D+ G+A+TG+GKT +F++P L    L++       P
Sbjct: 120 LLEQGFKAPTPIQAQSWSIVLSGRDLVGVAKTGSGKTLAFIVPALAHIALQEPLKAGDGP 179

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
             ++L PTRELA Q+     K     ++    + GG P   Q   L +G  +L+ TPGR+
Sbjct: 180 MVIVLAPTRELAQQIEQEAIKVLPQ-SIRCGCIYGGAPKGPQLGLLRQGVHILVATPGRL 238

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193
           +D     ++ +  +  LV+DEADRMLDMGF P ++ I   +   RQTL+FSAT   ++Q 
Sbjct: 239 IDFMEIKRVNLLRVTYLVLDEADRMLDMGFEPQVRAICGQIRPDRQTLMFSATWPRDIQN 298

Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG--IIF 251
           ++ +F +N  RI V +     E + +  V  +   + + A L +L +  +  +N   ++F
Sbjct: 299 LAASFQKNWVRINVGS----MELLANKDVTQHFILTSEAAKLDELKRLMERHRNQRVLVF 354

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           C  KK    L   L++ G    AIHG+ +QR R  IL  F++     +VA+D+AARGLDI
Sbjct: 355 CKTKKTADYLEFQLKRNGVDCMAIHGDKEQRQREFILERFRKDPRLCVVATDVAARGLDI 414

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED--------IKHIDAIEKL 363
            ++  V N+D P + ++Y+HRIGRTGRAG  G +FT++ K +         + ++ +E+ 
Sbjct: 415 KELETVVNYDFPMQIDDYVHRIGRTGRAGAKGASFTMITKHETQLNASTVFQLVELVERA 474

Query: 364 IEKKVDWL 371
            ++   WL
Sbjct: 475 GQEVPGWL 482


>gi|146104369|ref|XP_001469806.1| DEAD box RNA helicase [Leishmania infantum]
 gi|134074176|emb|CAM72918.1| putative DEAD box RNA helicase [Leishmania infantum JPCM5]
          Length = 571

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/383 (34%), Positives = 214/383 (55%), Gaps = 18/383 (4%)

Query: 2   DFADLGLSPKVVCA-VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +F  L   P+ + A +L+ G+  PTPIQ ++  +VL   D+ G+A+TG+GKT +F++P L
Sbjct: 104 EFDMLTAVPQYLKAKLLEQGFKAPTPIQAQSWSIVLSGRDLVGVAKTGSGKTLAFIVPAL 163

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               L++       P  ++L PTRELA Q+     K     ++    + GG P   Q   
Sbjct: 164 AHIALQEPLKVGDGPMVIVLAPTRELAQQIEQEAIKVLPQ-SIRCGCIYGGAPKGPQLGL 222

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G  +L+ TPGR++D     ++ +  +  LV+DEADRMLDMGF P ++ I   +   R
Sbjct: 223 LRQGVHILVATPGRLIDFMEIKRVNLLRVTYLVLDEADRMLDMGFEPQVRAICGQIRPDR 282

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT   ++Q ++ +F +N  RI V +     E + +  V  +   + + A L +L
Sbjct: 283 QTLMFSATWPRDIQNLAASFQKNWVRINVGS----MELLANKDVTQHFILTSEAAKLDEL 338

Query: 239 LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +  +  +N   +IFC  KK    L   L++ G    AIHG+ +QR R  IL  F++   
Sbjct: 339 KRLMERHRNQRVLIFCKTKKTADYLEFQLKRNGVDCMAIHGDKEQRQREFILERFRKDPR 398

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED--- 353
             +VA+D+AARGLDI ++  V N+D P + ++Y+HRIGRTGRAG  G +FT++ K +   
Sbjct: 399 LCVVATDVAARGLDIKELETVVNYDFPMQIDDYVHRIGRTGRAGAKGASFTMITKHETQL 458

Query: 354 -----IKHIDAIEKLIEKKVDWL 371
                 + ++ +E+  ++   WL
Sbjct: 459 NASTVFQLVELVERAGQEVPGWL 481


>gi|218281439|ref|ZP_03487888.1| hypothetical protein EUBIFOR_00453 [Eubacterium biforme DSM 3989]
 gi|218217417|gb|EEC90955.1| hypothetical protein EUBIFOR_00453 [Eubacterium biforme DSM 3989]
          Length = 475

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 122/353 (34%), Positives = 196/353 (55%), Gaps = 8/353 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  + L   ++ A+   GY KP P+Q + IP +L + D    ++TG+GKTASF +P++
Sbjct: 1   MTFEQMNLDQNIIQALHTLGYEKPLPVQEQVIPNILSQTDCIVKSRTGSGKTASFAIPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE      R P+ L+L PTRELA Q+  +F++ G    +    + G  PF+ Q + L+
Sbjct: 61  QNLEIDE---RSPQALVLTPTRELALQIQQDFDRIGTFKKIKTLPIFGKQPFKFQKEDLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V+I TPGR+LDH  +  L  + I+ +V+DEAD ML+M F+  +Q I   +P    T
Sbjct: 118 QRCHVVIGTPGRVLDHLQQQTLDPSKIKYVVLDEADEMLNMNFLDEVQAILKYMPKKHVT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT    +Q++S+ +L  P ++++ T ++    +E  +             L  L +
Sbjct: 178 CLFSATYPAVIQRMSKKYLYKPAKVDL-TSTNKPNILEEAYHVNEEHKELFLLHLLALKK 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  M    IFC  +  V  +   LEK   SV  IHG + Q  R+  +  FK+G ++++V
Sbjct: 237 PESCM----IFCKTQARVDAVYACLEKNQVSVDKIHGGMMQEERLSHMRRFKKGKVRILV 292

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            +D+A+RG+D+  V  + N+D+P+  E Y HRIGR+GR    G A +LV + D
Sbjct: 293 CTDVASRGIDVFKVEMIINYDMPSPVETYTHRIGRSGRVDEQGLAISLVNEYD 345


>gi|318056293|ref|ZP_07975016.1| putative DEAD-box RNA helicase [Streptomyces sp. SA3_actG]
          Length = 449

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 122/350 (34%), Positives = 183/350 (52%), Gaps = 4/350 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +   ++  +   G   P PIQ  T+P  L   D+ G  +TG+GKT +F L +L  
Sbjct: 10  FEDLDMPEALLKTLAAQGVTTPFPIQAATLPNSLAGRDILGRGRTGSGKTLAFGLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y  + NL +  ++GG+    Q   L RG
Sbjct: 70  TAGRRAEPRAPLGLVLVPTRELAQQVTDALTPYATSVNLRLTTVVGGLSLTKQANALRRG 129

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A++L+ TPGR+ D  +RG   + ++   V+DEAD+M DMGF+P +  + + V    QT+L
Sbjct: 130 AELLVATPGRLKDLIDRGDCTLQDVRTTVLDEADQMADMGFLPQVTRLLNQVEPEGQTML 189

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++  +FL +P    V+  +    T+EH  +   A  + K A+   +   +
Sbjct: 190 FSATLDANVDRLVRDFLDDPVVHSVDPSAGAVTTMEHHLL-YVADATVKRAVTHHIAARE 248

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F + K     L   L   G    A+HG   Q  R + L  FK G +  +VA+
Sbjct: 249 GRL---IMFVDTKHGADRLAKRLLADGVPAAALHGGRSQPQRTRTLDQFKNGQVTALVAT 305

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           ++AARG+ +  +  V N D P   ++Y+HR GRT RAG  G   TLV  E
Sbjct: 306 NVAARGIHVDALDLVVNVDPPVDHKDYLHRGGRTARAGESGSVVTLVLPE 355


>gi|119182910|ref|XP_001242554.1| hypothetical protein CIMG_06450 [Coccidioides immitis RS]
          Length = 388

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 117/353 (33%), Positives = 194/353 (54%), Gaps = 11/353 (3%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+  P+ IQ + I  + +  D    AQ+GTGKTA+F + +L +++     +R  + L+L 
Sbjct: 15  GFESPSAIQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQVIDTA---LRETQALVLS 71

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA Q+ +     G   N+     IGG       +KL+ G  V+  TPGR+ D   R
Sbjct: 72  PTRELATQIQNVIMAVGDYMNVQCHACIGGTNVGDDIRKLDHGQHVVSGTPGRVADMIRR 131

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
             L   +I++LV+DEAD +L  GF   I ++   +P   Q ++ SAT+  ++  ++  F+
Sbjct: 132 RHLRTRHIKMLVLDEADDLLARGFREQIYDVYRYLPPATQVVVLSATLPYDVLSMTTKFM 191

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
            +P RI V     T E ++  F+A   +   +   C L   L     T+   +IFCN ++
Sbjct: 192 TDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTL-----TITQAVIFCNTRR 246

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
            V  L   + +  F+V ++HG + Q+ R  I+ +F++G  ++++++D+ ARG+D+  V  
Sbjct: 247 KVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSL 306

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  IE     ++D
Sbjct: 307 VINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIELYYSTQID 359


>gi|229893773|gb|ACQ90244.1| DEAD-box RNA helicase [Glycine max]
          Length = 537

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 132/358 (36%), Positives = 197/358 (55%), Gaps = 10/358 (2%)

Query: 3   FADLGLSPKVV-CAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           FAD GL   V+ C     G+ KP+PIQ +  P +L   D+ GIA TG+GKT +F +P ++
Sbjct: 121 FADSGLPENVLECC---KGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAVM 177

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L K + +    R P  L+L PTRELA Q++D     G++  +    L GG     Q  
Sbjct: 178 HVLGKRKGKSSKGRNPLGLVLSPTRELAQQISDVMCDAGRSCGVQSICLYGGTSKGPQIS 237

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G D++I TPGRI D    G   +  +  +V+DEADRMLDMGF   +++I       
Sbjct: 238 SLKSGIDIVIGTPGRIQDLIEMGICCLKEVSFVVLDEADRMLDMGFEQIVRSILGQTCSD 297

Query: 178 RQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           RQ ++FSAT    +  +++ F+  NP ++ V +    A       V      S+   L+ 
Sbjct: 298 RQMVMFSATWPLPVHYLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDKRLVA 357

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L +   + +N + +F   K     + + L++ G+ V +IHG+  Q  R K LS FK  +
Sbjct: 358 LLEKYHKSQRNRVLVFVLYKLEAKRVENMLQEGGWKVVSIHGDKAQHDRTKALSLFKNAS 417

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             LM+A+D+AARGLDIPDV  V N+  P   E+Y+HRIGRTGRAG+ G A T   +++
Sbjct: 418 CPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFMQQN 475


>gi|218194025|gb|EEC76452.1| hypothetical protein OsI_14162 [Oryza sativa Indica Group]
          Length = 779

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 132/394 (33%), Positives = 213/394 (54%), Gaps = 28/394 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKT---------------IPLVLQRHDVCGIA 45
           +  A LGL  ++V  +   G     PIQ+                 IP  L   D+   A
Sbjct: 111 LAIARLGLPEQLVSTLEKRGITHLFPIQVSVLGGDSEGIGVSRAVLIP-ALDGRDLIARA 169

Query: 46  QTGTGKTASFVLPMLTIL---EKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYN 100
           +TGTGKT +F +PM+  L   + GR+  R R+PR L+L PTRELA QV    ++      
Sbjct: 170 KTGTGKTLAFGIPMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPK-- 227

Query: 101 LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160
           L+   + GG+ +  Q   L RG DV++ TPGRI+D  N G L +  ++ LV+DEAD+ML 
Sbjct: 228 LSTVCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLA 287

Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIE 218
           +GF   ++ I   +P  RQ++LFSATM   ++K+S  +L NP  I++  +     AE I+
Sbjct: 288 VGFEEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIK 347

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
               A     + K  +L  L+         I+F   K++   +  +L     +  A+HG+
Sbjct: 348 --LYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNS-IASEALHGD 404

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
           I Q  R + L+ F++G   ++VA+D+AARGLDIP+V  + ++++PN  E ++HR GRTGR
Sbjct: 405 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 464

Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
           AG+ G A  +      + + ++E+ +  + D+++
Sbjct: 465 AGKAGTAILMFTNSQRRTVRSLERDVGCRFDFIS 498


>gi|78355388|ref|YP_386837.1| DEAD/DEAH box helicase-like [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217793|gb|ABB37142.1| DEAD/DEAH box helicase-like protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 529

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 114/336 (33%), Positives = 194/336 (57%), Gaps = 7/336 (2%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
           A   AG+    P+Q+ T+P  LQR D+   ++TG+GKT +++LP++  ++  +   +   
Sbjct: 52  AAARAGWQSLMPVQLHTMPYFLQRRDLMVQSRTGSGKTGAYLLPLIDRIDPHKNECQ--- 108

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTRELA QV    E   +   + +A + GG+ +  Q   L+ GA +++ TPGR+L
Sbjct: 109 ALVLVPTRELALQVVHEAEVLYQELGINIAAVYGGVGYGKQTDALKAGAQLVVGTPGRVL 168

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR-QTLLFSATMTDELQK 193
           DH  R  L ++ + +L+ DEADRML +GF P ++ +   +P  R  T LFSAT    + +
Sbjct: 169 DHLLRRTLTLDALRVLLFDEADRMLSIGFYPDMKEVQRYLPRRRISTYLFSATYPPHVVR 228

Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
           ++  FL +P+ + ++          H F     +  +K  +L ++++ ++   + IIFCN
Sbjct: 229 LAGEFLHDPQMLSLSHSQVHITQTPHVFYE--CKPMEKDRVLVRIIEIENP-ASAIIFCN 285

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            K NV  +   L+  G++   +  ++ Q  R ++L   + G ++ +VA+D+AARG+DIPD
Sbjct: 286 TKSNVHYVTAVLQGFGYNADELSADLSQAKREQVLKKLRNGQVRFLVATDVAARGIDIPD 345

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           + HV  ++ P   E+YIHR GRTGRAG  G+  +LV
Sbjct: 346 LSHVVLYEPPEDHESYIHRAGRTGRAGASGEVISLV 381


>gi|229174959|ref|ZP_04302479.1| ATP-dependent RNA helicase yqfR [Bacillus cereus MM3]
 gi|228608627|gb|EEK65929.1| ATP-dependent RNA helicase yqfR [Bacillus cereus MM3]
          Length = 436

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 211/379 (55%), Gaps = 14/379 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L  
Sbjct: 6   FTQYDFKPFLIDAVRELRFTEPTGIQKKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           +   R  V++   +I  PTRELA Q+ +   K  K    +  +T   LIGG   +   +K
Sbjct: 66  INASREEVQL---VITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I S +P   
Sbjct: 123 LKKQPHIVVGTPGRIKDLVEAQALFVHKANTIIVDEADLMLDMGFIHDVDKIASRMPRNL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL-QQ 237
           Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +  ++  K  L+ + 
Sbjct: 183 QMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPS--KHRNKIDLVNKM 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ +  +   ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 241 LLQFKPYL--AVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKL--IEKKVDWLNGD 374
           D++EK   IE K   L GD
Sbjct: 359 DSLEKQRHIEFKHVELRGD 377


>gi|296220525|ref|XP_002756346.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 3 [Callithrix
           jacchus]
          Length = 643

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 205/353 (58%), Gaps = 17/353 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ+KT   V +  D+   A+TGTGKT SF +P++  
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 63  LEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ +  +   R P+ L+L PTRELA QVA +F+   +   L+VA   GG  +++Q   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   G+L ++ +  +V+DE D+MLD+GF   +++I      T  
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 179 ----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
               QTLLFSAT    + KV++ ++++  +++++        A T+EH  +A    +S++
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEH--LAIQCHWSQR 374

Query: 232 CALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A++  +LQ    +    IIFC  KKNV  +  +   +  + C +HG+I Q  R   L  
Sbjct: 375 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKG 433

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           F+EG+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 434 FREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 486


>gi|301111750|ref|XP_002904954.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262095284|gb|EEY53336.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 847

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 124/353 (35%), Positives = 195/353 (55%), Gaps = 13/353 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLSP V   V+  GY  PTPIQ K++P+VL   D   +A+TG+GKTA+F++PM+  
Sbjct: 38  FQHLGLSPLVFRGVMAMGYKVPTPIQRKSLPIVLSGKDCVAMARTGSGKTAAFLVPMVEK 97

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++   ++ + R ++L PTRELA Q     ++  K  +L +AL++GG   + Q + +   
Sbjct: 98  LKEHSTKIGV-RAVVLSPTRELAVQTLRFAKQLSKFTSLKMALIVGGEGMDQQFEAIASN 156

Query: 123 ADVLICTPGRILD------HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            DVL+ TPGR++        FN     +  +E +V DEADR+ +MGF   +Q I   +P 
Sbjct: 157 PDVLVATPGRLMHLLQEIPDFN-----LKAVEYVVFDEADRIFEMGFAEQLQEILKNMPT 211

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           +RQTLLFSAT+   L + +   L +P+ I ++  +  +E ++  F  T     K    L 
Sbjct: 212 SRQTLLFSATLPKALVQFARAGLSDPELIRLDVENKISENLKMAFF-TVRSLDKPALFLY 270

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            + +        I+F   + +V  L   L          +G++DQ SR   L  F+    
Sbjct: 271 MVREFLPKGDQTIVFAATRHHVEFLHALLAANHIEASCAYGDMDQASRKINLGKFRAKKT 330

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            L++ +D+AARG+DIP + +V N+  P  A+ ++HR+GR  RAGR G AF+ V
Sbjct: 331 NLLIVTDVAARGIDIPLLNNVLNYSFPPTAKLFVHRVGRAARAGRSGTAFSFV 383


>gi|255716336|ref|XP_002554449.1| KLTH0F05610p [Lachancea thermotolerans]
 gi|238935832|emb|CAR24012.1| KLTH0F05610p [Lachancea thermotolerans]
          Length = 396

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 131/377 (34%), Positives = 210/377 (55%), Gaps = 7/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L  +++  +   G+V P+ IQ + I  + + HDV   AQ+GTGKT +F +  L  
Sbjct: 24  FDDLNLKEELLRGIYGYGFVDPSAIQQRAILPITEGHDVLAQAQSGTGKTGTFSIAAL-- 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +K   +++ P+ L+L PTRELA Q+         + ++ V   IGG  F    + L  G
Sbjct: 82  -QKIDPKIKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEALRDG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A +++ TPGR+ D   R +   ++I++ ++DEAD ML  GF   I  I +L+P T Q +L
Sbjct: 141 AQIVVGTPGRVFDMIERRRFRTDHIKMFILDEADEMLSSGFKEQIYKIFTLLPPTTQVVL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQQLLQS 241
            SATM  ++ +V+  F++NP RI V     T E I+  F+    + Y   C  L  L  S
Sbjct: 201 LSATMPQDVLEVTTKFMRNPIRILVKKDELTLEGIKQFFINVEEEDYKYDC--LSDLYDS 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   L    F+V AI+ ++ Q+ R  I+  F+ G+ +++++
Sbjct: 259 I-SVTQAVIFCNTRRKVEELTQRLVADNFTVSAIYSDLPQQQRDTIMKEFRTGSSRILIS 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D+  +  +E
Sbjct: 318 TDLLARGIDVQQVSLVINYDLPTNKENYIHRIGRGGRFGRKGIAINFVTNKDVGAMRELE 377

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ L  ++S L
Sbjct: 378 RFYSTQIEELPANISEL 394


>gi|221128053|ref|XP_002155499.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
 gi|260222669|emb|CBA32460.1| Putative ATP-dependent RNA helicase rhlE [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 415

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 130/365 (35%), Positives = 200/365 (54%), Gaps = 6/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL+P +  A++   +  PTP+Q   IP  +   DV   AQTG+GKTA+F L +L
Sbjct: 1   MPFSSLGLTPALAAAMVQQQFSTPTPVQTGAIPPAVAGRDVLVCAQTGSGKTAAFALAVL 60

Query: 61  TILEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLT--VALLIGGIPFEAQNK 117
                  A   R P+ L+L PTRELA QV        +   L   ++++ GG+    Q  
Sbjct: 61  QRWTPPAASGARRPQALVLVPTRELAVQVGGVLSTLARAAGLPAKISVVFGGVSINPQLM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+++ T GR+LD  +   L + +I  LV+DEADRMLD+GF   +  I +L+P  
Sbjct: 121 ALRGGTDIVVATTGRLLDLVDHNALQLQHIRCLVLDEADRMLDLGFAEELDRIDALLPKQ 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q+LLFSAT +  +++++E+ L+ P  I +      A  I    +   A  S++  LL+ 
Sbjct: 181 HQSLLFSATYSAGVRQLAESRLREPLEITIKQEEQAAPDITQRAITVDA--SRRTQLLRH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+  Q+     ++F   K     +   L + G      H  + Q  R ++L++FK   +Q
Sbjct: 239 LV-VQEAWPRVLVFVATKYAAEMVADKLRRAGLQAEPFHAQLSQGKRTQVLADFKASVVQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  +  V NFD+P  A +Y+HRIGRT RAG+ G A + V+ +   H 
Sbjct: 298 VVVATDVAARGVDIAGLPVVVNFDLPRSATDYVHRIGRTARAGQAGMAVSFVSADTAAHF 357

Query: 358 DAIEK 362
             IEK
Sbjct: 358 ALIEK 362


>gi|297675282|ref|XP_002815615.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 2
           [Pongo abelii]
          Length = 705

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 198/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 284 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKE 343

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 344 LQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 403

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 404 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 463

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   V    Q+SK+  L++ L    D 
Sbjct: 464 TFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQT-VLQVGQFSKREKLVEILRNIGD- 521

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 522 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRYGKCPVLVATSV 580

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 581 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHL 633


>gi|149732736|ref|XP_001496190.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
           isoform 3 [Equus caballus]
          Length = 691

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 124/353 (35%), Positives = 199/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 270 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKE 329

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 330 LQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 389

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D  ++ K+ +  ++ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 390 PGRLMDIISKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 449

Query: 186 TMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+QK++  FL++    + V         ++   +    QYSK+  L++ L    D 
Sbjct: 450 TFPEEIQKLAGEFLKSKYLFVAVGQVGGACRDVQQTILQV-GQYSKREKLVEILRNIGD- 507

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 508 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 566

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 567 AARGLDIENVQHVINFDLPSAIDEYVHRIGRTGRCGNTGRAVSFFDPESDSHL 619


>gi|67623509|ref|XP_668037.1| eukaryotic initiation factor 4A-3 (eIF4A-3) (eIF-4A-3)
           [Cryptosporidium hominis TU502]
 gi|54659212|gb|EAL37800.1| eukaryotic initiation factor 4A-3 (eIF4A-3) (eIF-4A-3)
           [Cryptosporidium hominis]
          Length = 395

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 197/379 (51%), Gaps = 10/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++GL   ++  +   G+  P+ IQ + I  ++Q  D    +Q+GTGKT  F +  L I
Sbjct: 23  FEEMGLKDNLLRGIYSYGFEFPSAIQRRAIVPIIQGRDTIIQSQSGTGKTCVFSVGALEI 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             K +  V  P  LIL PTRELA Q        G   ++     IGG   +   K    G
Sbjct: 83  CSKSKENV--PMVLILSPTRELAEQSEKVCTSIGDYLDIRTHSCIGGKKLKDDIKAFNSG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+L    +G L    I++L+IDEAD M D GF   + +I   +P   QT+L
Sbjct: 141 VSIISGTPGRVLQMIEQGYLSTKKIKLLIIDEADEMFDYGFKTQVYDIYKYLPPRIQTVL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+ D++  +++ F++NP +I V     + + I    V    +   +   C L   L 
Sbjct: 201 VSATLPDDILVMAQKFMRNPLQILVPKEEVSLDKIRQYHVQVEEEKWKFETLCDLYDTL- 259

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   IIFCN K  V  L   + +  F+V  +HG++ Q +R +IL  F+EG  +++
Sbjct: 260 ----TVTQSIIFCNTKNKVEWLSKKMMENHFTVSFVHGDLPQVTREEILREFREGKTRVL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL  RG+D+  V  V N+D+P   E YIHRIGR+GR GR G A  L+ KED   +  
Sbjct: 316 ITTDLWGRGIDVQQVNLVVNYDLPINKELYIHRIGRSGRFGRSGIAINLITKEDESMLSL 375

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +E+    K+  L G++ +L
Sbjct: 376 LERFYSIKISKLPGNVKNL 394


>gi|326470936|gb|EGD94945.1| ATP-dependent RNA helicase DBP8 [Trichophyton tonsurans CBS 112818]
 gi|326478499|gb|EGE02509.1| ATP-dependent RNA helicase DBP8 [Trichophyton equinum CBS 127.97]
          Length = 528

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 139/382 (36%), Positives = 210/382 (54%), Gaps = 17/382 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL+P +V ++      +PT IQ   IP +++  D  G ++TG+GKT +F  P   I
Sbjct: 101 FSSLGLAPWLVSSLKAMEIKRPTAIQKSCIPEIIKGRDCIGGSRTGSGKTVAFAAP---I 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K          +IL PTRELA Q+ +  +      +L   L+ GG     Q   L + 
Sbjct: 158 LHKWSEDPFGIYAVILTPTRELALQIFEQVKAISAPQSLKPLLITGGSDMRPQAIGLSQR 217

Query: 123 ADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSLVP 175
             ++I TPGR+ DH         + +  + ++V+DEADR+L  G    +P ++   S +P
Sbjct: 218 PHIVIATPGRLADHIKSSGEDTIIGLRRVRMVVLDEADRLLTSGPGSMLPDVETCLSALP 277

Query: 176 FT--RQTLLFSATMTDELQKV-SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY--SK 230
            +  RQTLLF+AT+T E++ + S    +N   I V   S+   TI      TY Q   + 
Sbjct: 278 PSSDRQTLLFTATVTPEVRALKSMPRAKNKPPIFVTEISTENTTIPPTLKQTYLQVPLNH 337

Query: 231 KCALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A L  LL ++ ++ K+ IIFCN+ K    L   L +    V ++H  + Q  R+  LS
Sbjct: 338 REAFLHVLLSTEGNSSKSTIIFCNRTKTADLLERILRRLSHRVTSLHSLLPQSERIANLS 397

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+    +L+VA+D+AARGLDIP VG V N+DVP   ++YIHR+GRT RAGR G+A TLV
Sbjct: 398 RFRASAARLLVATDVAARGLDIPSVGLVINYDVPRNPDDYIHRVGRTARAGREGEAITLV 457

Query: 350 AKEDIKHIDAIEKLIEKK-VDW 370
            + D++ + AIE  + K+ V W
Sbjct: 458 GQRDVQLVLAIEARVGKQMVAW 479


>gi|229019510|ref|ZP_04176327.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1273]
 gi|229025752|ref|ZP_04182153.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1272]
 gi|228735552|gb|EEL86146.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1272]
 gi|228741766|gb|EEL91949.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1273]
          Length = 436

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 212/378 (56%), Gaps = 14/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L  
Sbjct: 6   FTQYDFKPFLIDAVRELRFSEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           ++  R  V++   +I  PTRELA Q+ +   K  K    +  +T   LIGG   +   +K
Sbjct: 66  IDASREEVQL---VITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   +++ TPGRI D      L +     +++DEAD MLDMGFI  +  I   +P   
Sbjct: 123 LKKQPHIVVGTPGRIKDLVEEKALFVYKANTIIVDEADLMLDMGFIQDVDKIAGRMPKNL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ- 237
           Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +  ++  K  L++  
Sbjct: 183 QMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPS--RHRNKIELVKNM 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ +  +   I+F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 241 LLQFKPYL--AIVFTNTKKKADEVADGLAERGLKVGRIHGDLSPRDRKKMMKQVRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|332834199|ref|XP_003312636.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pan
           troglodytes]
          Length = 643

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 205/353 (58%), Gaps = 17/353 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ+KT   V +  D+   A+TGTGKT SF +P++  
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 63  LEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ +  +   R P+ L+L PTRELA QVA +F+   +   L+VA   GG  +++Q   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   G+L ++ +  +V+DE D+MLD+GF   +++I      T  
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 179 ----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
               QTLLFSAT    + KV++ ++++  +++++        A T+EH  +A    +S++
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEH--LAIQCHWSQR 374

Query: 232 CALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A++  +LQ    +    IIFC  KKNV  +  +   +  + C +HG+I Q  R   L  
Sbjct: 375 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKG 433

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           F+EG+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 434 FREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 486


>gi|332218198|ref|XP_003258246.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Nomascus
           leucogenys]
          Length = 643

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 205/353 (58%), Gaps = 17/353 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ+KT   V +  D+   A+TGTGKT SF +P++  
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 63  LEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ +  +   R P+ L+L PTRELA QVA +F+   +   L+VA   GG  +++Q   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   G+L ++ +  +V+DE D+MLD+GF   +++I      T  
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 179 ----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
               QTLLFSAT    + KV++ ++++  +++++        A T+EH  +A    +S++
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEH--LAIQCHWSQR 374

Query: 232 CALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A++  +LQ    +    IIFC  KKNV  +  +   +  + C +HG+I Q  R   L  
Sbjct: 375 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKG 433

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           F+EG+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 434 FREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 486


>gi|281337523|gb|EFB13107.1| hypothetical protein PANDA_018037 [Ailuropoda melanoleuca]
          Length = 491

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 124/353 (35%), Positives = 198/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 95  IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKE 154

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 155 LQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 214

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  ++ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 215 PGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 274

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   +    QYSK+  L++ L    D 
Sbjct: 275 TFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQV-GQYSKREKLVEILRNIGD- 332

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 333 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 391

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 392 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNHL 444


>gi|194374303|dbj|BAG57047.1| unnamed protein product [Homo sapiens]
          Length = 643

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 205/353 (58%), Gaps = 17/353 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ+KT   V +  D+   A+TGTGKT SF +P++  
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 63  LEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ +  +   R P+ L+L PTRELA QVA +F+   +   L+VA   GG  +++Q   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   G+L ++ +  +V+DE D+MLD+GF   +++I      T  
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 179 ----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
               QTLLFSAT    + KV++ ++++  +++++        A T+EH  +A    +S++
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEH--LAIQCHWSQR 374

Query: 232 CALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A++  +LQ    +    IIFC  KKNV  +  +   +  + C +HG+I Q  R   L  
Sbjct: 375 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKG 433

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           F+EG+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 434 FREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 486


>gi|194763631|ref|XP_001963936.1| GF20995 [Drosophila ananassae]
 gi|190618861|gb|EDV34385.1| GF20995 [Drosophila ananassae]
          Length = 996

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 206/378 (54%), Gaps = 15/378 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L   V+  +   G+ KPT IQ +  P+ L   D+ GIAQTG+GKT +++LP + 
Sbjct: 246 NFEECSLPAHVIDEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIV 305

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNK 117
            +  +    R   P  L+L PTRELA Q+      YG      +    + GG     Q +
Sbjct: 306 HIGNQPPILRGEGPVALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQAR 365

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LERG +V+I TPGR++D        +     LV+DEADRMLDMGF P I+ I   +   
Sbjct: 366 DLERGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 425

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKC 232
           RQ +++SAT   E+Q ++ +FL +  +I + + S +A     + +E C      Q  +  
Sbjct: 426 RQVVMWSATWPKEVQALAGDFLNDYIQINIGSMSLSANHNIRQIVEICTEMEKPQ--RMV 483

Query: 233 ALLQQLLQSQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            LL+++  + +   N     IIF   K  V ++   +  +G++  +IHG+  Q  R  +L
Sbjct: 484 RLLKEIAPTTNNAANNGNKIIIFVETKIKVEDILQIIRTEGYTATSIHGDKTQNERDSVL 543

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +F+ G   +++A+D+A+RGLD+ D+ +V N+D PN +ENY+HRIGRTGR  + G A+T 
Sbjct: 544 KDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTF 603

Query: 349 VAKEDIKHIDAIEKLIEK 366
              ++ K    +  ++E+
Sbjct: 604 FTPDNAKQARELISVLEE 621


>gi|119331088|ref|NP_001073193.1| probable ATP-dependent RNA helicase DDX10 [Gallus gallus]
 gi|82197778|sp|Q5ZJF6|DDX10_CHICK RecName: Full=Probable ATP-dependent RNA helicase DDX10; AltName:
           Full=DEAD box protein 10
 gi|53133616|emb|CAG32137.1| hypothetical protein RCJMB04_18j24 [Gallus gallus]
          Length = 875

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 133/378 (35%), Positives = 212/378 (56%), Gaps = 24/378 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P L +
Sbjct: 75  FSDFPLSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALEL 134

Query: 63  LEKGRARVRMPRT-------LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           L       R+  T       LI+ PTRELA Q      K GKN++ +  L+IGG   + +
Sbjct: 135 L------YRLQWTSADGLGVLIISPTRELAFQTFKVLRKVGKNHDFSAGLIIGGKDLKEE 188

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           ++++    ++LICTPGR+L H +       +++++L++DEADR+LDMGF   +  I   +
Sbjct: 189 SERIHH-INMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENL 247

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKC 232
           P  RQTLLFSAT T  ++ ++   L++P+ + V+  +  ST  T++  ++    Q+  K 
Sbjct: 248 PKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLDQNYIVCELQH--KI 305

Query: 233 ALLQQLLQSQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            +L   L+S    K+ + F  C + + +  +   L+  G  V A+HG   Q  RM++ + 
Sbjct: 306 NVLYSFLRSHLKKKSIVFFASCKEVQYLFRVFCKLQP-GLPVLALHGKQQQMKRMEVYTC 364

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F      ++ A+D+AARGLD P V  V  FD P  A  YIHR+GRT R    G+A  ++ 
Sbjct: 365 FVRKKAAVLFATDIAARGLDFPAVNWVIQFDCPEDANTYIHRVGRTARYKEGGEALLVLL 424

Query: 351 KEDIKHIDAIEKLIEKKV 368
             + K +  +E+L ++KV
Sbjct: 425 PSEEKGM--VEQLAQRKV 440


>gi|85000347|ref|XP_954892.1| ATP-dependent (RNA) helicase [Theileria annulata strain Ankara]
 gi|65303038|emb|CAI75416.1| ATP-dependent (RNA) helicase, putative [Theileria annulata]
          Length = 811

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 130/358 (36%), Positives = 206/358 (57%), Gaps = 11/358 (3%)

Query: 3   FADLGLSPKVVCAVLDAG--YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           F  LGL+ K +C  L     Y +P+ IQ +TIP VL   DV  IA+TG+GKT +++ P++
Sbjct: 11  FGTLGLN-KPICLTLQKKFRYDQPSAIQRRTIPHVLAGSDVVCIARTGSGKTVAYISPIV 69

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN----LTVALLIGGIPFEAQN 116
            +LE   + V   R LIL PTRELA QV    +K+    N    L V LLIGG   E+Q 
Sbjct: 70  QLLE-AHSSVVGVRCLILLPTRELALQVEGVLKKFVNFSNQSDALRVVLLIGGKSVESQF 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L    D++I TPGR++ H  +  L ++ +  LVIDEAD++ +MGF+P I  + + +P 
Sbjct: 129 GALSFNPDIVIATPGRLVYHLEQKSLSLSLVTHLVIDEADKLFEMGFLPDIYKVFAHLPK 188

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +Q +L SAT+  +L +     L  P   +++   +  E ++  F+  Y++  +K ++L 
Sbjct: 189 VKQVVLVSATLPTQLSEFVSFGLNEPIVTKLDQDQNINEQLQMSFI--YSRNEEKISVLL 246

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L     +K  I+F   + +V      L K G+SV  ++G +D  +R+  +S F+    
Sbjct: 247 RVLNKYKDLK-SIVFVATRHHVEFFRTLLHKLGYSVSCVYGTMDMDNRVIEMSRFRSNKT 305

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           ++++ +D+A+RGLDIP V  V NFD P   + +IHR+GRT RAGR G A ++V  +D 
Sbjct: 306 RILLVTDVASRGLDIPFVDLVVNFDFPYSTKLFIHRVGRTARAGRQGLAVSIVTNKDF 363


>gi|225450401|ref|XP_002278318.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296089875|emb|CBI39694.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 133/405 (32%), Positives = 219/405 (54%), Gaps = 30/405 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +  A LGL P++V ++   G     PIQ   +   L+  D+   A+TGTGKT +F +P++
Sbjct: 116 LALAQLGLPPRLVESLEQRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPII 175

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L +        R   R+PR L+L PTRELA QV    ++      L+   + GG+ + 
Sbjct: 176 KRLSEDDEKRTSQRRSGRLPRVLVLAPTRELAKQVEKEIKESAPY--LSTVCVYGGVSYI 233

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L RG DV++ TPGRI+D      L +  ++ LV+DEAD+ML +GF   ++ I   
Sbjct: 234 TQQNALSRGVDVVVGTPGRIIDLIKGNSLKLGEVQNLVLDEADQMLAVGFEEDVEVILEK 293

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
           +P  RQ++LFSATM   ++K++  +L NP  I++  +     AE I+   + T A  + K
Sbjct: 294 LPSERQSMLFSATMPAWVKKLARKYLDNPLTIDLVGDHDEKLAEGIKLYAIPTTA--TSK 351

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             +L  L+         I+F   K++   +  +L     +  A+HG+I Q  R + L+ F
Sbjct: 352 RTILSDLITVYAKGGKTIVFTQTKRDADEVSMAL-TNSIASEALHGDISQHQRERTLNGF 410

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA---FTL 348
           ++G   ++VA+D+AARGLDIP+V  + ++++PN  E ++HR GRTGRAG+ G A   FT 
Sbjct: 411 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 470

Query: 349 VAKEDIKHID-------------AIEKLIEKKVDWLNGDLSSLNP 380
             +  +K ++             AIE+++E   + +   L+ ++P
Sbjct: 471 SQRRTVKSLERDVGCKFEFISPPAIEEVLESSAEQVVATLNGVHP 515


>gi|322503578|emb|CBZ38664.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 571

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 128/368 (34%), Positives = 207/368 (56%), Gaps = 17/368 (4%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--ILEKGRARVRMP 73
           +L+ G+  PTPIQ ++  +VL   D+ G+A+TG+GKT +F++P L    L++       P
Sbjct: 119 LLEQGFKAPTPIQAQSWSIVLSGRDLVGVAKTGSGKTLAFIVPALAHIALQEPLKVGDGP 178

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
             ++L PTRELA Q+     K     ++    + GG P   Q   L +G  +L+ TPGR+
Sbjct: 179 MVIVLAPTRELAQQIEQEAIKVLPQ-SIRCGCIYGGAPKGPQLGLLRQGVHILVATPGRL 237

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193
           +D     ++ +  +  LV+DEADRMLDMGF P ++ I   +   RQTL+FSAT   ++Q 
Sbjct: 238 IDFMEIKRVNLLRVTYLVLDEADRMLDMGFEPQVRAICGQIRPDRQTLMFSATWPRDIQN 297

Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG--IIF 251
           ++ +F +N  RI V +     E + +  V  +   + + A L +L +  +  +N   +IF
Sbjct: 298 LAASFQKNWVRINVGS----MELLANKDVTQHFILTSEAAKLDELKRLMERHRNQRVLIF 353

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           C  KK    L   L++ G    AIHG+ +QR R  IL  F++     +VA+D+AARGLDI
Sbjct: 354 CKTKKTADYLEFQLKRNGVDCMAIHGDKEQRQREFILERFRKDPRLCVVATDVAARGLDI 413

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED--------IKHIDAIEKL 363
            ++  V N+D P + ++Y+HRIGRTGRAG  G +FT++ K +         + ++ +E+ 
Sbjct: 414 KELETVVNYDFPMQIDDYVHRIGRTGRAGAKGASFTMITKHETQLNASTVFQLVELVERA 473

Query: 364 IEKKVDWL 371
            ++   WL
Sbjct: 474 GQEVPGWL 481


>gi|225557690|gb|EEH05975.1| ATP-dependent RNA helicase DBP3 [Ajellomyces capsulatus G186AR]
          Length = 487

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 126/346 (36%), Positives = 199/346 (57%), Gaps = 18/346 (5%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILE--KGRARVRMPRTLI 77
           + KPTPIQ  T P +    DV G+A+TG+GKT +F +P +  +LE     +  R+   +I
Sbjct: 90  FSKPTPIQSVTWPYLFAGRDVIGVAETGSGKTLAFGVPCIRKVLEINASHSSFRI-SAVI 148

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           + PTRELA Q+ D   K+  N  + +A + GG   + Q + L++ A V++ TPGR+ D  
Sbjct: 149 ITPTRELAMQIYDQLVKFTPN-GVGLACIYGGASKDDQRRALKK-ASVIVATPGRLKDFH 206

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--QTLLFSATMTDELQKVS 195
           +   L +  ++ LV+DEADRMLD GF   I++I S +P +R  QT++F+AT    ++K++
Sbjct: 207 SDESLNLKKVKYLVLDEADRMLDKGFEQDIKDIVSTMPSSRKRQTVMFTATWPISVRKLA 266

Query: 196 ENFLQNPKRIEVNTPSST--------AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
             F++ P  + +    S+         + +E   V    + S+  +LL Q  + ++ M  
Sbjct: 267 TTFMKEPVTVTIGGDLSSDIRANTRIKQIVE--VVKPENKESRLLSLLNQYQRGRNAMDK 324

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            ++FC  KK    +   +  +GF V  IHG+++Q  R   L+ FK G++ ++VA+D+AAR
Sbjct: 325 VLVFCLYKKEATRIERFIRSKGFKVAGIHGDMNQTERFNSLNAFKSGSVPVLVATDVAAR 384

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           GLDIP V  V N   P   E+Y+HRIGRTGRAG  G A T+  + D
Sbjct: 385 GLDIPAVKLVLNVTFPLTVEDYVHRIGRTGRAGSDGLAITMFTEND 430


>gi|219668951|ref|YP_002459386.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
 gi|219539211|gb|ACL20950.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 443

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 120/362 (33%), Positives = 207/362 (57%), Gaps = 8/362 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+  ++V A+   G V+PT IQ  TIPL+L   DV G ++TG+GKT +++LP+L 
Sbjct: 9   SFQELGIQAELVEALAKEGIVQPTEIQKSTIPLILNNRDVAGQSETGSGKTLAYLLPVLQ 68

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKKL 119
            +++ +   R  + L+L PT ELA QV    +   ++    +T A +IG +    Q +KL
Sbjct: 69  KIDRNK---RENQVLVLTPTHELALQVQRQIQDLSRHLAATITSAAIIGNVNIARQIEKL 125

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +++ + GRIL+   + K+   +++ +V+DEAD++LD   I  ++ +        Q
Sbjct: 126 KEKPHIIVGSAGRILELIQKRKISAQSLKTIVLDEADQLLDERNIQTVKAVLKTAYKDSQ 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +  + +  FL++P    +   ++   TI H       +   K  LL++L+
Sbjct: 186 ILLFSATLSQDAIEQAAGFLKDPAVQRITMKATVVPTIIHQHF--MCEQRDKLELLRKLV 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +  +  +IF N+ + +      L   G    AI G   + +R + +++F+ G  QL+
Sbjct: 244 RHLEPGR-ALIFINKTEEIEKTVERLSYHGLDAVAISGASQKENRRQAMADFRAGKTQLL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASDLAARGLDI ++ H+FN D+P   + Y+HR+GRTGRAG+ G A +LV + ++  +  
Sbjct: 303 VASDLAARGLDIKNITHIFNLDIPEEPQLYLHRVGRTGRAGQSGVAVSLVTQRELPLLHK 362

Query: 360 IE 361
           IE
Sbjct: 363 IE 364


>gi|218231735|ref|YP_002369093.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228960551|ref|ZP_04122200.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229111759|ref|ZP_04241307.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock1-15]
 gi|229129563|ref|ZP_04258533.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-Cer4]
 gi|229146871|ref|ZP_04275236.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST24]
 gi|229152486|ref|ZP_04280678.1| ATP-dependent RNA helicase yqfR [Bacillus cereus m1550]
 gi|218159692|gb|ACK59684.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228631094|gb|EEK87731.1| ATP-dependent RNA helicase yqfR [Bacillus cereus m1550]
 gi|228636699|gb|EEK93164.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST24]
 gi|228653880|gb|EEL09748.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-Cer4]
 gi|228671753|gb|EEL27049.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock1-15]
 gi|228799151|gb|EEM46119.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 436

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 213/378 (56%), Gaps = 14/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L  
Sbjct: 6   FTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           +   R  V++   +I  PTRELA Q+ +   K  K    +  +T   LIGG   +   +K
Sbjct: 66  INASREEVQL---VITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ- 237
           Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +  ++  K  L+ + 
Sbjct: 183 QMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPS--KHRNKIDLVHKM 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ +  +   ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 241 LLQFKPYL--AVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|296333328|ref|ZP_06875781.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675167|ref|YP_003866839.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296149526|gb|EFG90422.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413411|gb|ADM38530.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 438

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 132/377 (35%), Positives = 206/377 (54%), Gaps = 16/377 (4%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P ++ AV   G+ +PT IQ + IP VL++  V G +QTGTGKT +++LP+L  ++  +
Sbjct: 11  LKPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLNKIDPAK 70

Query: 68  ARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
             V++   +I  PTRELA Q+   A    +  +   +     IGG   +    KL+    
Sbjct: 71  DVVQV---VITAPTRELANQIHQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLKIQPH 127

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGRI D      L ++  E LVIDEAD MLDMGFI  +  I S +P   Q L+FS
Sbjct: 128 LVVGTPGRIADLIKEQALSVHKAESLVIDEADLMLDMGFIADVDYIGSRMPEDLQMLVFS 187

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT+ ++L+   + +++NPK   V     TA  IEH  + +  ++  K  LL  ++   + 
Sbjct: 188 ATIPEKLKPFLKKYMENPKYAHVEPKQVTAAKIEHILIPS--KHRDKDKLLFDIMSHLNP 245

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
              GI+F N K    ++   L  +G  +  +HG +  R R K++    +     ++A+DL
Sbjct: 246 YL-GIVFANTKNTADHIAQYLTGKGLKIGLLHGGLTPRERKKVMKQINDLEFTYVIATDL 304

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL- 363
           AARG+DI  V HV N+++P+  + YIHR+GRT RAG  G+A T+    D   +  +EK+ 
Sbjct: 305 AARGIDIKGVSHVINYELPDDLDFYIHRVGRTARAGSSGQAMTIYELSDEDALARLEKMG 364

Query: 364 IE------KKVDWLNGD 374
           IE      +K +W  GD
Sbjct: 365 IEFDYLELEKGEWKKGD 381


>gi|73952801|ref|XP_850174.1| PREDICTED: similar to nucleolar protein GU2 isoform 2 [Canis
           familiaris]
          Length = 738

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 205/353 (58%), Gaps = 17/353 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ+KT   V +  D+   A+TGTGKT SF +P++  
Sbjct: 140 FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 199

Query: 63  LEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ +  +   R P+ L+L PTRELA QVA +F+   +   L+VA   GG  +++Q   +
Sbjct: 200 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 257

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   G+L ++ +  +V+DE D+MLD+GF   +++I      T  
Sbjct: 258 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 317

Query: 179 ----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
               QTLLFSAT    + KV++ ++++  +++++        A T+EH  +A    +S++
Sbjct: 318 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEH--LAIQCHWSQR 375

Query: 232 CALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A++  +LQ    +    IIFC  KKNV  +  +   +  + C +HG+I Q  R   L  
Sbjct: 376 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKG 434

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           F+EG+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 435 FREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 487


>gi|154324134|ref|XP_001561381.1| eukaryotic initiation factor 4A [Botryotinia fuckeliana B05.10]
 gi|160395528|sp|A6RJ45|IF4A_BOTFB RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|150842695|gb|EDN17888.1| eukaryotic initiation factor 4A [Botryotinia fuckeliana B05.10]
          Length = 398

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 134/376 (35%), Positives = 214/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P+++  V   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F    +++
Sbjct: 27  FDTMNLKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATF---SISV 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    V+  + LIL PTRELA Q+       G   N+     IGG       K L+ G
Sbjct: 84  LQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFMNVECHACIGGTSVRDDMKALQDG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 144 PQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 204 LSATMPQDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKE-DWKLDTLSDLYETV 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A+
Sbjct: 263 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIAT 321

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 322 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 381

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 382 FYSTQIEEMPMNVADL 397


>gi|330800403|ref|XP_003288226.1| hypothetical protein DICPUDRAFT_47799 [Dictyostelium purpureum]
 gi|325081734|gb|EGC35239.1| hypothetical protein DICPUDRAFT_47799 [Dictyostelium purpureum]
          Length = 615

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 124/341 (36%), Positives = 196/341 (57%), Gaps = 11/341 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML---TILEKGRARVRMPRTLI 77
           +  PT IQ ++ P++L  HD+ G+A TG+GKT +F+LP L     L K  +    P  L+
Sbjct: 126 FTSPTVIQGQSWPIILGGHDLVGLAATGSGKTLAFLLPALLKIISLPKRPSYGATPLILV 185

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           + PTRELA Q+ D  +   +  ++      GG+    Q + L  G D++I TPGR+ D  
Sbjct: 186 MAPTRELAQQIEDVCKSSVRGTSIRQLCAYGGLGKLDQCRILRNGVDIIIGTPGRLNDLL 245

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
            +  L  ++++ LV+DEADRMLDMGF+P I+ +   +P  RQTL+FSAT   E+++++  
Sbjct: 246 RKHHL--SSVQYLVLDEADRMLDMGFLPQIETLIDQIPKERQTLMFSATWPKEVKQLASK 303

Query: 198 FLQNPKRIEVNTPSSTAE--TIEHCF-VATYAQYSKKCALLQQL--LQSQDTMKNGIIFC 252
           FL++P +I V +   T      +H   +   A       +  ++  + + D     I+FC
Sbjct: 304 FLRDPIKITVGSQELTGSINVTQHITNIDELADIQVDDLIFDEINKILTADRSNLVIVFC 363

Query: 253 NQKKNVVNLCHSLE-KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           N+K    +  H L   +      +H   DQR R + L  F+E  I++++A+D+AARGLDI
Sbjct: 364 NEKYKCDDFQHYLSASKNEKSIVLHSGKDQRQREQGLRLFREKRIRILIATDVAARGLDI 423

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           P V  VFN+ +P   E+Y+HRIGRTGRAG+ G+A++ V  +
Sbjct: 424 PSVKAVFNYRLPGNIEDYVHRIGRTGRAGKTGEAWSYVTTQ 464


>gi|301785419|ref|XP_002928122.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 2
           [Ailuropoda melanoleuca]
          Length = 706

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 124/353 (35%), Positives = 198/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 285 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKE 344

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 345 LQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 404

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  ++ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 405 PGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 464

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   +    QYSK+  L++ L    D 
Sbjct: 465 TFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQV-GQYSKREKLVEILRNIGD- 522

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 523 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 581

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 582 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNHL 634


>gi|193787510|dbj|BAG52716.1| unnamed protein product [Homo sapiens]
          Length = 575

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 198/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 154 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKE 213

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 214 LQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 273

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 274 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 333

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   V    Q+SK+  L++ L    D 
Sbjct: 334 TFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQT-VLQVGQFSKREKLVEILRNIGD- 391

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 392 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 450

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 451 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHL 503


>gi|152965210|ref|YP_001360994.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
           SRS30216]
 gi|151359727|gb|ABS02730.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
           SRS30216]
          Length = 530

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 135/439 (30%), Positives = 213/439 (48%), Gaps = 22/439 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADL +   +V  +   G V P PIQ  T+P  +   DV G  +TG+GKT +F LP++T 
Sbjct: 77  FADLFVPQPLVDVLAATGVVSPFPIQTATLPDSMAGRDVLGRGRTGSGKTIAFALPLVTR 136

Query: 62  ILEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +    R R    PR+L+L PTRELA QVA       K   L   ++ GG+    Q   L 
Sbjct: 137 VAASSRPRRAGRPRSLVLVPTRELANQVAATITPLAKALGLRTTVVFGGVGQNPQVSALR 196

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI  PGR+ D   +G   ++ +E+ V+DEAD M D+GF+P ++ +    P   Q 
Sbjct: 197 EGVDVLIACPGRLEDLIRQGHCHLDAVEVTVLDEADHMADLGFLPGVKRLLDATPAGGQR 256

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ + +  + + +L  P    V+   +   T+EH  +   A    K  L+++L  
Sbjct: 257 LLFSATLDNGIDVLVKRYLSEPVVHSVDPAVAPVSTMEHHVLEVGAD--GKNTLVRELAS 314

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   K +   L   L   G     +HGN+ Q +R + L+ F +G+++++ 
Sbjct: 315 GQGRT---VLFTRTKHSAKKLAKQLTAAGIPAVDLHGNLSQNARERNLAAFSDGSVKVLC 371

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   T+   +    +  +
Sbjct: 372 ATDIAARGIHVDDVSLVVHVDPPTEHKAYLHRSGRTARAGAGGLVVTVATPDQRGDVRTL 431

Query: 361 EKLIEKKVDWLNGDLSS------LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
            +       W N           + P    +D A       ++P+P      +RR K  +
Sbjct: 432 ARQAGISPQWTNVGAQHEVVERLVGPAAAWVDPA-------DSPVPTAPAQPERRAKAPA 484

Query: 415 --SQKSHIPLKESEKISKL 431
             + +   P  E+ + S L
Sbjct: 485 PVTARRSAPAGETSRRSAL 503


>gi|332821349|ref|XP_003310754.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 2 [Pan
           troglodytes]
          Length = 575

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 198/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 154 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKE 213

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 214 LQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 273

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 274 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPKMKKLISCPGMPSKEQRQTLMFSA 333

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   V    Q+SK+  L++ L    D 
Sbjct: 334 TFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQT-VLQVGQFSKREKLVEILRNIGD- 391

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 392 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 450

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 451 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHL 503


>gi|224031067|gb|ACN34609.1| unknown [Zea mays]
          Length = 414

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 200/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 43  FDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G    +    L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 103 LDYGLVECQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILGSG 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 160 VHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKIQVGV 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 220 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDLYETLA 279

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 280 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  
Sbjct: 335 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFD 394

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     ++ L  +++ L
Sbjct: 395 IQKFYNVLIEELPANVADL 413


>gi|169607499|ref|XP_001797169.1| hypothetical protein SNOG_06807 [Phaeosphaeria nodorum SN15]
 gi|182676401|sp|Q0UN57|PRP5_PHANO RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|160701425|gb|EAT85458.2| hypothetical protein SNOG_06807 [Phaeosphaeria nodorum SN15]
          Length = 1184

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 128/357 (35%), Positives = 194/357 (54%), Gaps = 10/357 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           +A +GL  + +      GY +PT IQ + IP+     D+ G+A+TG+GKT +F +PM+  
Sbjct: 546 WAQMGLLQQTMDVFTRVGYARPTAIQAQAIPIAESGRDLIGVAKTGSGKTLAFGIPMIRH 605

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + ++       P  LIL PTREL+ Q+ +  + +     +T+    GG P   Q   ++
Sbjct: 606 VLDQRPLKPADGPIGLILAPTRELSLQIVNELKPFLNASGITIKCAYGGQPISDQIAMIK 665

Query: 121 RGADVLIC-TPGRILD--HFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           RG   ++C T GR++D    N G++L    I  +V+DEADRM DMGF P +  I + +  
Sbjct: 666 RGGIHILCATAGRLIDLLQSNSGRVLSFRRITYVVLDEADRMFDMGFEPQVMKILASIRP 725

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LL 235
            RQT+LFSAT    +  ++   L  P  + +   S  A  I          Y KK A LL
Sbjct: 726 DRQTILFSATFPKTMAALARKALDKPAEVIIGGRSKVAPEITQHITIVPPSYEKKIAKLL 785

Query: 236 QQLLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEK-QGFSVCAIHGNIDQRSRMKILSNFK 292
             L Q  S D     +IF  +++   +L   L K + F+V  IHG  DQ  R + ++ FK
Sbjct: 786 HHLGQTFSDDENAQVLIFTERQETAEDLLSKLFKAKYFAVNTIHGAKDQTDRNEAINEFK 845

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +G + +++A+ +AARGLD+P +  V+NFD P   E+Y+HR GRTGRAG  G A TL+
Sbjct: 846 QGLLNILIATSVAARGLDVPGLALVYNFDCPTHLEDYVHRCGRTGRAGNKGLAVTLI 902


>gi|262118318|ref|NP_001160006.1| probable ATP-dependent RNA helicase DDX4 isoform 4 [Homo sapiens]
          Length = 575

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 198/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 154 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKE 213

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 214 LQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 273

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 274 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 333

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   V    Q+SK+  L++ L    D 
Sbjct: 334 TFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQT-VLQVGQFSKREKLVEILRNIGD- 391

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 392 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 450

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 451 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHL 503


>gi|157960731|ref|YP_001500765.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157845731|gb|ABV86230.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 429

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 132/382 (34%), Positives = 212/382 (55%), Gaps = 17/382 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DL L  +++   L +  +  T IQ   IP +L   D+  +AQTG+GKT +F LP+L
Sbjct: 10  MKFSDLNLCAEILSK-LPSKLIVATDIQRLAIPQILAGKDLLALAQTGSGKTYAFGLPLL 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                G +     + L+L PTRELA QV +  E    +  + V  L GG+  E Q K L+
Sbjct: 69  QSNINGNSDSGEVKALVLVPTRELALQVGEALESVSDSTGIIV--LCGGVDKEEQVKTLQ 126

Query: 121 RG-----ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           +        +++ TPGR+LD     +L + +++ LV+DEADR+++MGF P ++ I   +P
Sbjct: 127 QARLQLKPQLVVATPGRLLDLLREQQLSLESVKQLVLDEADRLMEMGFWPDLERILEFIP 186

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKC-A 233
             RQT+LFSAT+  EL + +   L+ P ++E +  +S    I E  ++      ++   A
Sbjct: 187 SKRQTMLFSATLAPELNEKALGLLRAPVKVEAHAANSVVTDISESLYLVNKGDKARALIA 246

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L+Q+   SQ      ++F N K +   L   L K G +  A+HG+ +Q  R + L++FK 
Sbjct: 247 LIQKNQWSQ-----VLVFINAKDDADKLAKRLVKAGINAAALHGDKEQLDRQQTLADFKA 301

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             + ++V +DL +RG+ +  +  V N D+PN A  Y+HRIGRT RAG  G A +LV   +
Sbjct: 302 LKLPVLVTTDLLSRGIHVDALPVVINLDLPNSAPVYVHRIGRTARAGDKGLAISLVCHGE 361

Query: 354 IKHIDAIEKLIEK--KVDWLNG 373
              + AI++L E+  K++ L G
Sbjct: 362 ADSLKAIQQLTERELKLEALEG 383


>gi|70948515|ref|XP_743756.1| RNA helicase-1 [Plasmodium chabaudi chabaudi]
 gi|56523410|emb|CAH76963.1| RNA helicase-1, putative [Plasmodium chabaudi chabaudi]
          Length = 633

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 131/357 (36%), Positives = 207/357 (57%), Gaps = 17/357 (4%)

Query: 24  PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-----PRTLIL 78
           PT IQ++ +P +L   D+ GIA TG+GKT  FVLP++    +   R  +     P  LI+
Sbjct: 207 PTQIQMQGLPSILIGRDIIGIAFTGSGKTIVFVLPLIMTCLEAELRCPIEEGEGPLGLII 266

Query: 79  EPTRELAAQ---VADNFEKY--GKNYNLTVAL-LIGGIPFEAQNKKLERGADVLICTPGR 132
            P+RELA+Q   + + F +Y    N+ +  +L +IGG+    Q K++++G  +L+ TPGR
Sbjct: 267 CPSRELASQTHNIINYFCEYLHKDNFPMLKSLCVIGGVSTYEQGKEIKKGVHMLVATPGR 326

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           + D  N+ ++ +     L  DEADR++D+GF   I+N        RQTLLFSATM  ++Q
Sbjct: 327 LNDMLNKKRMTLEQCRYLCFDEADRLIDLGFEEEIRNTLDNFSNQRQTLLFSATMPKKIQ 386

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           + +++ L NP  I +N   + A  ++      Y +   K + L Q+LQ   T    +IFC
Sbjct: 387 EFAKSTLVNP--IIINVGRAGAANLDVIQEVEYVKEEFKLSYLLQVLQK--TGPPVLIFC 442

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             KK+V ++   L  +G +  AIHG++ Q  R++ ++ F+ G   ++V +D+A++GLD P
Sbjct: 443 ENKKDVDDVHEYLLLKGVNAIAIHGSLGQTERLEAINLFRNGEKDVLVGTDVASKGLDFP 502

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK--EDIKHIDAIEKLIEKK 367
            + HV N+D+P   ENY+HRIGRTGR G+ G A T + K  E+   +D    LIE K
Sbjct: 503 SIEHVINYDMPKDIENYVHRIGRTGRCGKTGIATTFINKNQEEAILLDLKALLIEAK 559


>gi|313202794|ref|YP_004041451.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312442110|gb|ADQ78466.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 453

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 130/364 (35%), Positives = 203/364 (55%), Gaps = 9/364 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPM 59
           M FADLG++  ++ A+       PT IQ++ IP +L    D+  +AQTGTGKTA+F +P 
Sbjct: 1   MTFADLGINDDIIQALDGNNISTPTDIQLQAIPHILSHTSDLVAVAQTGTGKTAAFSIP- 59

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNKK 118
             IL+     +   + L+L PTREL  QVA  F  + K  +   A  + GG P E Q +K
Sbjct: 60  --ILQSVNPLLPQIQALVLVPTRELGQQVAREFFLFSKYLSRVFAEAVYGGAPIEDQIQK 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+R   V++ TPGR++D   R  L +++++ LV+DEAD M++MGF   I  I        
Sbjct: 118 LKRPTHVVVATPGRLIDLLERKALSLDHLKYLVLDEADEMMNMGFKDGIDRILESCNKNI 177

Query: 179 QTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
             +LF+ATM  +++ +   +L+     I +N        IEH ++  Y Q  +K   L+ 
Sbjct: 178 TKMLFTATMPADVKHIISKYLRPGFAEIHINAEEFINRNIEHSYL-LYKQ-GEKLEYLKA 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L S    + GI FC  K +   L   L     S  A+HGN++Q  R K++  FK G+I 
Sbjct: 236 FL-SGHADERGIAFCRTKLDAKRLAKQLAGCIVSADALHGNLNQEMRDKVMRAFKRGSIN 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+D+AARG+D+ D+ ++ ++ +P + E Y HR GRT RAG+ G +  L  K+ ++ I
Sbjct: 295 LLVATDIAARGIDVKDLDYIVHYSLPEKTEQYTHRSGRTARAGKSGISVCLATKDQLEDI 354

Query: 358 DAIE 361
             ++
Sbjct: 355 HTLQ 358


>gi|6320224|ref|NP_010304.1| Fal1p [Saccharomyces cerevisiae S288c]
 gi|2500524|sp|Q12099|FAL1_YEAST RecName: Full=ATP-dependent RNA helicase FAL1; AltName:
           Full=Translation initiation factor four A-like protein 1
 gi|160385737|sp|A6ZXY5|FAL1_YEAS7 RecName: Full=ATP-dependent RNA helicase FAL1; AltName:
           Full=Translation initiation factor four A-like protein 1
 gi|840874|emb|CAA89846.1| unknown [Saccharomyces cerevisiae]
 gi|1216228|emb|CAA65213.1| orf:PZC399 [Saccharomyces cerevisiae]
 gi|1431450|emb|CAA98842.1| FAL1 [Saccharomyces cerevisiae]
 gi|51830220|gb|AAU09684.1| YDR021W [Saccharomyces cerevisiae]
 gi|151942009|gb|EDN60365.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|256273263|gb|EEU08206.1| Fal1p [Saccharomyces cerevisiae JAY291]
 gi|285811043|tpg|DAA11867.1| TPA: Fal1p [Saccharomyces cerevisiae S288c]
          Length = 399

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 123/383 (32%), Positives = 209/383 (54%), Gaps = 14/383 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+  P+ IQ + I  ++   DV   AQ+GTGKTA+F + +L  
Sbjct: 25  FESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQA 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER- 121
           ++    R +  + LIL PTRELA+Q+    +  G   N+    + GG   +   KK+++ 
Sbjct: 85  ID---LRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKH 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD--MGFIPYIQNITSLVPFTRQ 179
           G   +  TPGR+LD   +  L   N+++LV+DEAD +L   +GF   I +I + +P   Q
Sbjct: 142 GCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQ 201

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT---YAQYSKKCALLQ 236
            ++ SATM  ++ +V+  F+ +P +I V     + E I+   V       ++   C +  
Sbjct: 202 VVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYD 261

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L     T+   +IFCN KK V  L   L +  F+V ++HG++ Q  R K++++F+ G  
Sbjct: 262 SL-----TITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHS 316

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   + K D+  
Sbjct: 317 RVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK 376

Query: 357 IDAIEKLIEKKVDWLNGDLSSLN 379
           +  IEK    K++ +  + + L+
Sbjct: 377 LREIEKFYSIKINPMPANFAELS 399


>gi|643070|gb|AAA80219.1| ribosomal DEAD box protein [Leishmania braziliensis]
          Length = 403

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 125/378 (33%), Positives = 206/378 (54%), Gaps = 9/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   G+ KP+ IQ + I    +  D+   AQ+GTGKT +F + +L  
Sbjct: 28  FDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQR 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK---NYNLTVALLIGGIPFEAQNKKL 119
           L+    R  + + L+L PTRELA Q A+   + G+   N        +GG   +   +KL
Sbjct: 88  LD---FRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSAKFCETFVGGTRVQDDLRKL 144

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  V + TPGR+ D   RG L   ++ +LV+DEAD ML  GF   I  I   +P   Q
Sbjct: 145 QAGVVVAVGTPGRVSDVIKRGALRTESLRVLVLDEADEMLSQGFADQIYEIFRFLPKDIQ 204

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM +E+ ++++ F+++P RI V   S T E I+  F+A   ++  K   L  L 
Sbjct: 205 VALFSATMPEEVLELTKKFMRDPVRILVKRESLTLEGIKQFFIAVEEEH--KLDTLMDLY 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++  ++   +IF N ++ V  +   L +   +V ++H  + +  R ++++ F+ G+ +++
Sbjct: 263 ETV-SIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRVL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +DL ARG+D+  V  V NFD+P   ENY+HRIGR GR G  G A   V ++D++ +  
Sbjct: 322 VTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGVKGVAINFVTEKDVELLHE 381

Query: 360 IEKLIEKKVDWLNGDLSS 377
           IE     ++D L  D ++
Sbjct: 382 IEGHYHTQIDELPVDFAA 399


>gi|296504780|ref|YP_003666480.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|296325832|gb|ADH08760.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
          Length = 457

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 213/378 (56%), Gaps = 14/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L  
Sbjct: 6   FTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           +   R  V++   +I  PTRELA Q+ +   K  K    +  +T   LIGG   +   +K
Sbjct: 66  INASREEVQL---VITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ- 237
           Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +  ++  K  L+ + 
Sbjct: 183 QMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPS--KHRNKIDLVHKM 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ +  +   ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 241 LLQFKPYL--AVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|26337015|dbj|BAC32191.1| unnamed protein product [Mus musculus]
          Length = 462

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 212/376 (56%), Gaps = 20/376 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P+L  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 63  LEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     R++   T     LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +
Sbjct: 131 L----YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE 186

Query: 118 KLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++    ++L+CTPGR+L H +        N+++LV+DEADR+LDMGF   +  I   +P 
Sbjct: 187 RIN-NINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPK 245

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCAL 234
            RQTLLFSAT T  ++ ++   L++P+ + V+  +  ST  T+E  ++    +  +K ++
Sbjct: 246 KRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYII--CELHQKISV 303

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL--EKQGFSVCAIHGNIDQRSRMKILSNFK 292
           L   L+S    K  I+F +  K V  L       + G S+ A+HG   Q  RM++ + F 
Sbjct: 304 LFSFLRSH-LKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFV 362

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                ++ A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   
Sbjct: 363 RKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPS 422

Query: 353 DIKHIDAIEKLIEKKV 368
           + + +  +++L++KKV
Sbjct: 423 EEQGM--VQQLLQKKV 436


>gi|162462542|ref|NP_001104874.1| translation initiation factor [Zea mays]
 gi|2286151|gb|AAB64289.1| translation initiation factor [Zea mays]
          Length = 414

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 200/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 43  FDDMGLQENLLRGIYRYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G    +    L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 103 LDYGLVECQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILGSG 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 160 VHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKIQVGV 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 220 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDLYETLA 279

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 280 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  
Sbjct: 335 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERIVFD 394

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     ++ L  +++ L
Sbjct: 395 IQKFYNVLIEELPANVADL 413


>gi|7022398|dbj|BAA91585.1| unnamed protein product [Homo sapiens]
          Length = 622

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 130/361 (36%), Positives = 196/361 (54%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++  
Sbjct: 183 FKEMKFPATILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 242

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
             +   R+       P  LI+ P+RELA Q     E Y +         L  AL IGG+ 
Sbjct: 243 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMS 302

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+D GF   I+ I 
Sbjct: 303 VKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDTGFEGDIRTIF 362

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  +++ L  P  + +N   + A +++   V    +Y K+
Sbjct: 363 SYFKGQRQTLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLD---VIQEVEYVKE 417

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL+  Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 K 351
           K
Sbjct: 538 K 538


>gi|268573013|ref|XP_002641484.1| Hypothetical protein CBG09775 [Caenorhabditis briggsae]
          Length = 814

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 129/366 (35%), Positives = 205/366 (56%), Gaps = 5/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA       ++ A+  + Y +PTPIQ   IP  L   DV GIA+TG+GKTA+++ P +  
Sbjct: 265 FAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVH 324

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
           T+ +        P  +I+ PTRELA QV    +++ K YN+ V    GG   +E  N+  
Sbjct: 325 TMDQPDLKEGEGPVAVIVVPTRELAIQVYQEAKRFCKVYNINVICAYGGGSKWEQSNELQ 384

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA++++CTPGRI+D              LV DEADRM DMGF   +++I+  V   RQ
Sbjct: 385 NEGAEMVVCTPGRIIDLVKMEATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPDRQ 444

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT   ++++++ + L +P RI           IE        Q  K   L++ L+
Sbjct: 445 CLMFSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVYVMQNQDVKFHWLIRNLV 504

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   ++   +IF  +K +  +L   L+ + F +  +HG++ Q  R + L  F++ + Q++
Sbjct: 505 EFA-SLGKVLIFVTKKLDSEDLAKKLKLKDFDIVLLHGDMLQAERNENLLKFRKKS-QIL 562

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++  V NFD+    + ++HRIGRTGRAG  G A+TLV ++DI+ +  
Sbjct: 563 VATDVAARGLDISEIRTVVNFDMARDIDTHVHRIGRTGRAGHRGTAYTLVTEKDIETVGH 622

Query: 360 IEKLIE 365
           + K +E
Sbjct: 623 LVKNLE 628


>gi|190405005|gb|EDV08272.1| eukaryotic initiation factor 4A-12 [Saccharomyces cerevisiae
           RM11-1a]
          Length = 399

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 124/383 (32%), Positives = 209/383 (54%), Gaps = 14/383 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+  P+ IQ + I  ++   DV   AQ+GTGKTA+F + +L  
Sbjct: 25  FESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQA 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER- 121
           ++    R +  + LIL PTRELA+Q+    +  G   N+    + GG   +   KK+++ 
Sbjct: 85  ID---LRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKH 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD--MGFIPYIQNITSLVPFTRQ 179
           G   +  TPGR+LD   R  L   N+++LV+DEAD +L   +GF   I +I + +P   Q
Sbjct: 142 GCQAVSGTPGRVLDMIKRQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQ 201

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT---YAQYSKKCALLQ 236
            ++ SATM  ++ +V+  F+ +P +I V     + E I+   V       ++   C +  
Sbjct: 202 VVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYD 261

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L     T+   +IFCN KK V  L   L +  F+V ++HG++ Q  R K++++F+ G  
Sbjct: 262 SL-----TITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHS 316

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   + K D+  
Sbjct: 317 RVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK 376

Query: 357 IDAIEKLIEKKVDWLNGDLSSLN 379
           +  IEK    K++ +  + + L+
Sbjct: 377 LREIEKFYCIKINPMPANFAELS 399


>gi|158316506|ref|YP_001509014.1| DEAD/DEAH box helicase domain-containing protein [Frankia sp.
           EAN1pec]
 gi|158111911|gb|ABW14108.1| DEAD/DEAH box helicase domain protein [Frankia sp. EAN1pec]
          Length = 491

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 184/362 (50%), Gaps = 6/362 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+  ++   +       PTPIQ  T+P  L   DV G  +TG+GKT +F+LP++ 
Sbjct: 3   SFTDLGVPARLTDVLTRLAIETPTPIQRATLPDALAGRDVLGRGRTGSGKTLAFLLPVVA 62

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L  G RA+   PR L+L PTRELAAQ+            LT   + GG+  E Q   + 
Sbjct: 63  RLSGGPRAQAGAPRALVLAPTRELAAQIDTALRPLAAAAGLTSCTVFGGVGQEPQVAAIR 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+++  PGR+ D   +G+  +  ++I+V+DEAD M D+GF+P ++ +        Q 
Sbjct: 123 RGVDIVVACPGRLEDLLAQGRCSLAQVKIVVLDEADHMADLGFLPAVRRLIGQTAAGGQR 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+   +  +   +L  P   E ++  S   T+ H  +     + ++ + L  L+ 
Sbjct: 183 MLFSATLDKAIDTLVRQYLSRPAVHEADSAQSPVGTMAHHLL-----HVERDSRLPVLVD 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F   K     L   L + G     +HGN+ Q +R + L +F  G    +V
Sbjct: 238 LSSAPGRAVVFTRTKHGAKALARQLNRAGVRAVELHGNLSQNARTRNLDDFHTGRASALV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ + +V  V + D P   + Y+HR GRT RAG  G   TL   E I+ +  +
Sbjct: 298 ATDIAARGIHVDNVALVIHADPPADHKAYLHRSGRTARAGNSGTVITLATTEQIREVTQL 357

Query: 361 EK 362
            +
Sbjct: 358 AR 359


>gi|171847136|gb|AAI61525.1| LOC549577 protein [Xenopus (Silurana) tropicalis]
          Length = 678

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 129/345 (37%), Positives = 205/345 (59%), Gaps = 16/345 (4%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           V  AGYVK TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L+ ++ +G    +   
Sbjct: 267 VTKAGYVKLTPVQKHSIPIILAGRDLMACAQTGSGKTAAFLLPILSHMMNEGITASQFLP 326

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKLERGADVLIC 128
              P+ +I+ PTREL  Q+  +  K+     +   ++ GGI P  A  + +ERG ++L  
Sbjct: 327 LQEPQAIIIAPTRELINQIYLDARKFSYGTCVRPVVVYGGIHPVHAM-RDVERGCNILCA 385

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI--TSLVPF--TRQTLLFS 184
           TPGR++D   R K+ ++ ++ LV+DEADRMLDMGF P ++N+  +  +P    RQTL+FS
Sbjct: 386 TPGRLMDIIGREKIGLSKLKYLVLDEADRMLDMGFAPVMENLIGSPGMPAKEERQTLMFS 445

Query: 185 ATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           AT   E+Q+++  FL++    + V         +E   +    +Y K+  L++ +LQS  
Sbjct: 446 ATYPAEIQRLASKFLKSDHLFVVVGLVGGACSDVEQTILEI-QEYRKRDKLVE-ILQSSG 503

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +  +IF N KK    +   L ++ F   +IHG+ +Q  R + + +F+ G   ++V + 
Sbjct: 504 NERT-MIFVNTKKKADVIAGYLCQEHFPTTSIHGDREQCQREEAIRDFRSGKCPVIVCTA 562

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +AARGLDI +V HV N+DVP   + Y+HRIGRTGR G  GKA + 
Sbjct: 563 VAARGLDIENVQHVINYDVPKEIDEYVHRIGRTGRCGNVGKATSF 607


>gi|154288372|ref|XP_001544981.1| hypothetical protein HCAG_02028 [Ajellomyces capsulatus NAm1]
 gi|160380612|sp|A6QXC1|DBP3_AJECN RecName: Full=ATP-dependent RNA helicase DBP3
 gi|150408622|gb|EDN04163.1| hypothetical protein HCAG_02028 [Ajellomyces capsulatus NAm1]
          Length = 487

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 126/346 (36%), Positives = 198/346 (57%), Gaps = 18/346 (5%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILE--KGRARVRMPRTLI 77
           + KPTPIQ  T P +    DV G+A+TG+GKT +F +P +  +LE     +  R+   +I
Sbjct: 90  FSKPTPIQSVTWPYLFAGRDVIGVAETGSGKTLAFGVPCIRKVLEINASHSSFRI-SAVI 148

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           + PTRELA Q+ D   K+  N  + +A + GG   + Q + L++ A V++ TPGR+ D  
Sbjct: 149 ITPTRELAMQIHDQLVKFTPN-GVGLACIYGGASKDDQRRALKK-ASVIVATPGRLKDFH 206

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--QTLLFSATMTDELQKVS 195
           +   L +  ++ LV+DEADRMLD GF   I++I S +P +R  QT++F+AT    ++K++
Sbjct: 207 SDESLNLKKVKYLVLDEADRMLDKGFEQDIKDIVSAMPSSRKRQTVMFTATWPISVRKLA 266

Query: 196 ENFLQNPKRIEVNTPSST--------AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
             F++ P  + +    S+         + +E   V    + S+  +LL Q  + ++ M  
Sbjct: 267 TTFMKEPVTVTIGGDLSSDIRANTRIKQIVE--VVKPENKESRLLSLLNQYQRGRNAMDK 324

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            ++FC  KK    +   +  +GF V  IHG+++Q  R   L  FK G++ ++VA+D+AAR
Sbjct: 325 VLVFCLYKKEATRIERFIRSKGFKVAGIHGDMNQTERFNSLDAFKSGSVPVLVATDVAAR 384

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           GLDIP V  V N   P   E+Y+HRIGRTGRAG  G A T+  + D
Sbjct: 385 GLDIPAVKLVLNVTFPLTVEDYVHRIGRTGRAGSDGLAITMFTEND 430


>gi|126644819|ref|XP_001388126.1| U5 snRNP 100 kD protein [Cryptosporidium parvum Iowa II]
 gi|126117354|gb|EAZ51454.1| U5 snRNP 100 kD protein, putative [Cryptosporidium parvum Iowa II]
 gi|323509541|dbj|BAJ77663.1| cgd3_3690 [Cryptosporidium parvum]
          Length = 529

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 132/403 (32%), Positives = 213/403 (52%), Gaps = 42/403 (10%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRAR 69
           + + GY KPTPIQ++ IP+ L+  D+ GIA+TG+GKT +F++P+++      IL+   ++
Sbjct: 157 IRNIGYEKPTPIQMQCIPIGLKLRDMIGIAETGSGKTIAFLIPLISYVGNKPILDYKTSQ 216

Query: 70  VRMPRTLILEPTRELAAQVADNFEKY-GKNYNLT---VALLIGGIPFEAQNKKLERGADV 125
              P  LIL P RELA Q+ D  +K   K + L       ++GG   + Q   L +G ++
Sbjct: 217 -EGPYGLILAPARELALQIEDEAQKLLNKTHELKRIRTLSIVGGRNIDQQAFSLRKGVEI 275

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTRQTLLF 183
           +I TPGR+ D   +   ++     +++DEADRM+D+GF   +  I   +P    R T +F
Sbjct: 276 IIATPGRMQDCLEKTLTVLVQCSYVILDEADRMIDLGFQDSLNFILDQIPPEIQRTTHMF 335

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM  EL+ +++ +L +P  + +    +  ++I+   +   ++  KK  L+  L   + 
Sbjct: 336 SATMQKELENIAKRYLNSPINVTIGDIGAGKKSIQQ-ILNFISENKKKSTLINTLNNKEL 394

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
            +   I+F NQKK V  +C  +   GF   ++HG   Q  R   L+ FK G   ++V++D
Sbjct: 395 AVPPIIVFLNQKKMVDIVCREIVSHGFKATSLHGGKMQEVRENSLNLFKSGVFDILVSTD 454

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +A RG+DI ++  V N+D P   + Y HRIGRTGRAG++G A + +  ED          
Sbjct: 455 VAGRGIDINNINLVINYDFPKSIDTYTHRIGRTGRAGKNGIAISFITPED---------- 504

Query: 364 IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
                       S L P L+KI +        NNPIP +   F
Sbjct: 505 ------------SGLFPELKKILLTS------NNPIPNELKNF 529


>gi|228923037|ref|ZP_04086330.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836670|gb|EEM82018.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 436

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 213/378 (56%), Gaps = 14/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L  
Sbjct: 6   FTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           +   R  V++   +I  PTRELA Q+ +   K  K    +  +T   LIGG   +   +K
Sbjct: 66  INASREEVQL---VITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ- 237
           Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +  ++  K  L+ + 
Sbjct: 183 QMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPS--KHRNKIDLVHKM 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ +  +   ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 241 LLQFKPYL--AVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|295674415|ref|XP_002797753.1| ATP-dependent RNA helicase DBP3 [Paracoccidioides brasiliensis
           Pb01]
 gi|226280403|gb|EEH35969.1| ATP-dependent RNA helicase DBP3 [Paracoccidioides brasiliensis
           Pb01]
          Length = 486

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 129/343 (37%), Positives = 197/343 (57%), Gaps = 13/343 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEKG--RARVRMPRTLI 77
           + KPTPIQ  + P +    DV G+A+TG+GKT +F +P +  +LE    R+  R+   +I
Sbjct: 90  FSKPTPIQSVSWPFLFAGRDVIGVAETGSGKTLAFGVPCIRKVLEINGPRSSSRIS-AVI 148

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           + PTRELA Q+ D   K+  N N+ +A + GG   + Q + L++ A V++ T GR+ D  
Sbjct: 149 ITPTRELATQIYDQLMKFTPN-NVGIACIYGGASKDDQRRALKK-ASVVVATTGRLKDFQ 206

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQTLLFSATMTDELQKVS 195
               L ++ ++ LV+DEADRMLD GF   I++I   +P +  RQT++F+AT    ++K++
Sbjct: 207 GDESLRLDKVKYLVLDEADRMLDKGFEQDIKDIVGAMPSSKKRQTVMFTATWPISVRKLA 266

Query: 196 ENFLQNPKRIEVNTPSST--AETIEHCFVATYAQYSKK---CALLQQLLQSQDTMKNGII 250
           + F+++   I +   SS   A T     V       K+    +LL Q  + ++ M   ++
Sbjct: 267 DTFMKDQVMITIGDLSSDIRANTRIKQIVEVLKPEDKEYRLLSLLNQYQRGKNAMDKVLV 326

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           FC  KK    +   +  +GF V  IHG+++Q  R K L  FK G + L+VA+D+AARGLD
Sbjct: 327 FCLYKKEATRIERLIRSKGFKVAGIHGDMNQTERFKSLDAFKSGAVPLLVATDVAARGLD 386

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           IP V  V N   P   E+Y+HRIGRTGRAG  G A T+  + D
Sbjct: 387 IPAVRLVLNVTFPLTVEDYVHRIGRTGRAGADGLAITMFTEND 429


>gi|6808044|emb|CAB70750.1| hypothetical protein [Homo sapiens]
          Length = 635

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 198/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 214 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKE 273

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 274 LQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 333

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 334 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 393

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   V    Q+SK+  L++ L    D 
Sbjct: 394 TFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQT-VLQVGQFSKREKLVEILRNIGD- 451

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 452 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 510

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 511 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHL 563


>gi|325570266|ref|ZP_08146132.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156749|gb|EGC68923.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           casseliflavus ATCC 12755]
          Length = 448

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 204/366 (55%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F      P +  A+ D  +  PT +Q K IP++ +   V G +QTG+GKT +F+LP++
Sbjct: 1   MSFESFKFQPFIYEALADKKFSNPTEVQEKLIPVIQKGRSVVGQSQTGSGKTHTFLLPLM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKK 118
             ++  +  V++   +I  P+RELA Q+    ++ G  ++  + V+  +GG   + Q  +
Sbjct: 61  DKIDAEKDEVQV---VITAPSRELATQIYQAAKQIGGFHDPEIRVSNFVGGTDKQRQLSR 117

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+ +   V+I TPGRILD  N   L ++   + V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LQNQQPHVVIGTPGRILDMINEQALGVHTANVFVVDEADMTLDMGFLEEVDQIAGRLPEK 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+ ++L+   + ++ NP   E+ + +  ++TIE+  ++T  + + K  L+ Q
Sbjct: 178 LQMLVFSATIPEKLRPFLKKYMANPLIEEIKSKAVISDTIENWLISTKGKNTNK--LIYQ 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL +       I+F N K  V  +   L++QG  V  IHG+I  R R +I+   +    Q
Sbjct: 236 LLTTGHPYL-AIVFANTKSRVDEITDYLKEQGLKVAKIHGDISPRERKRIMRQVQNLDYQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N ++P   + +IHR+GRTGR    G A TL    D   I
Sbjct: 295 YVVATDLAARGIDIEGVSHVINAEIPADLDFFIHRVGRTGRNQMDGTAITLYDPSDEGAI 354

Query: 358 DAIEKL 363
            AIE L
Sbjct: 355 QAIEDL 360


>gi|307175593|gb|EFN65503.1| ATP-dependent RNA helicase DDX54 [Camponotus floridanus]
          Length = 751

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 125/358 (34%), Positives = 202/358 (56%), Gaps = 8/358 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  ++  +L  GY  PTPIQ KTIPL L+  D+  +A+TG+GKTA F++P+   
Sbjct: 10  FQSMALSFPILKGILKRGYKIPTPIQRKTIPLALEGRDIVAMARTGSGKTACFLIPLFEK 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K R      R LIL PTRELA Q     ++ G+   L   +++GG   + Q   +   
Sbjct: 70  L-KTRQTKTGARALILSPTRELALQTLKFIKELGRFTGLKAVVILGGDSMDNQFSIIHEN 128

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR +       L + N+E +V DEADR+ +MGF   IQ I + +P TRQTLL
Sbjct: 129 PDIIVATPGRFVHICIEMDLKLKNVEYVVFDEADRLFEMGFGEQIQEIVNRLPETRQTLL 188

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ-- 240
           FSAT+   L   ++  L +P  + ++  S   E +   F+    +  +K A+L  LL+  
Sbjct: 189 FSATLPKILVDFAKAGLNDPVLLRLDVESKLPEGLMLSFITCRPE--EKLAVLLCLLKRI 246

Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D+    IIF     +V  +   L+K   S   I+ N+D  +R    + F+ G ++++
Sbjct: 247 IKPDS--QTIIFAETMHHVEYIHQILDKANISNTFIYSNLDPCARKINAAKFQTGKVKVL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           + +D+AARG+DIP + +V NF+ P +++ ++HR+GR  RAGR G A+ +V+ ++  ++
Sbjct: 305 IVTDVAARGIDIPYLDYVINFNFPAKSKLFVHRVGRCARAGRVGTAYNIVSSDEYPYL 362


>gi|228941450|ref|ZP_04104001.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974381|ref|ZP_04134950.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980974|ref|ZP_04141277.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis Bt407]
 gi|228778765|gb|EEM27029.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis Bt407]
 gi|228785431|gb|EEM33441.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818231|gb|EEM64305.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 436

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 213/378 (56%), Gaps = 14/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L  
Sbjct: 6   FTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           +   R  V++   +I  PTRELA Q+ +   K  K    +  +T   LIGG   +   +K
Sbjct: 66  INASREEVQL---VITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ- 237
           Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +  ++  K  L+ + 
Sbjct: 183 QMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPS--KHRNKIDLVNKM 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ +  +   ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 241 LLQFKPYL--AVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|73952797|ref|XP_860793.1| PREDICTED: similar to nucleolar protein GU2 isoform 3 [Canis
           familiaris]
 gi|73952799|ref|XP_860823.1| PREDICTED: similar to nucleolar protein GU2 isoform 4 [Canis
           familiaris]
 gi|73952805|ref|XP_860916.1| PREDICTED: similar to nucleolar protein GU2 isoform 6 [Canis
           familiaris]
          Length = 673

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 205/353 (58%), Gaps = 17/353 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ+KT   V +  D+   A+TGTGKT SF +P++  
Sbjct: 75  FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 134

Query: 63  LEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ +  +   R P+ L+L PTRELA QVA +F+   +   L+VA   GG  +++Q   +
Sbjct: 135 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 192

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   G+L ++ +  +V+DE D+MLD+GF   +++I      T  
Sbjct: 193 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 252

Query: 179 ----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
               QTLLFSAT    + KV++ ++++  +++++        A T+EH  +A    +S++
Sbjct: 253 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEH--LAIQCHWSQR 310

Query: 232 CALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A++  +LQ    +    IIFC  KKNV  +  +   +  + C +HG+I Q  R   L  
Sbjct: 311 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKG 369

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           F+EG+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 370 FREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 422


>gi|73949725|ref|XP_544339.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
           [Canis familiaris]
          Length = 725

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 124/353 (35%), Positives = 198/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 304 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKE 363

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 364 LQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGYSIRQIVQGCNILCAT 423

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  ++ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 424 PGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 483

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   +    QYSK+  L++ L    D 
Sbjct: 484 TFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQV-GQYSKREKLVEILRSIGD- 541

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 542 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 600

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 601 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNHL 653


>gi|297675280|ref|XP_002815614.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 1
           [Pongo abelii]
          Length = 725

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 198/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 304 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKE 363

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 364 LQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 423

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 424 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 483

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   V    Q+SK+  L++ L    D 
Sbjct: 484 TFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQT-VLQVGQFSKREKLVEILRNIGD- 541

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 542 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRYGKCPVLVATSV 600

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 601 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHL 653


>gi|218899452|ref|YP_002447863.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|228902809|ref|ZP_04066954.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis IBL 4222]
 gi|228910119|ref|ZP_04073939.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis IBL 200]
 gi|228967351|ref|ZP_04128386.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|218540620|gb|ACK93014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|228792386|gb|EEM39953.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228849636|gb|EEM94470.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis IBL 200]
 gi|228856818|gb|EEN01333.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis IBL 4222]
          Length = 436

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 213/378 (56%), Gaps = 14/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L  
Sbjct: 6   FTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           +   R  V++   +I  PTRELA Q+ +   K  K    +  +T   LIGG   +   +K
Sbjct: 66  INASREEVQL---VITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ- 237
           Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +  ++  K  L+ + 
Sbjct: 183 QMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPS--KHRNKIDLVNKM 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ +  +   ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 241 LLQFKPYL--AVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|323357599|ref|YP_004223995.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
 gi|323273970|dbj|BAJ74115.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
          Length = 746

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 191/355 (53%), Gaps = 10/355 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL   +V A+   G   P PIQ  T+  +L+  DV    +TG+GKT +F  P++  
Sbjct: 356 FGELGLGDNIVRALAALGAASPFPIQAATVKPILEGRDVLARGRTGSGKTIAFGAPLVER 415

Query: 63  L---EKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +   + G+ R   R P+ LIL PTRELA Q+    +   ++  L    + GG+P   Q  
Sbjct: 416 ILRAQAGQRREFGRAPKALILAPTRELALQIDRTVQPIARSVGLFTTQIYGGVPQARQVG 475

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D++I TPGRI D   +GKL ++ +++ V+DE D M ++GF+  +Q I       
Sbjct: 476 ALKKGVDIIIGTPGRIEDLLKQGKLDLSQVQVTVLDEGDHMCELGFLEPVQRILRATADG 535

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q LLFSAT+  E+  + + FL  P   EV      + TIEH  +    ++  K  +L  
Sbjct: 536 SQKLLFSATLDREVAALVDEFLVEPAVYEVAGEDQDSGTIEHRVLVI--EHRDKAQILDS 593

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+   D     ++F   +     L    ++ G +  A+HG+++Q+ R + L     G + 
Sbjct: 594 LV---DRDGKTLVFARTRAYAEMLAEQFDEAGIAAVALHGDLNQQKRTRNLEKLTSGRVN 650

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           ++VA+D+AARG+ + D+  V   D P+  + Y+HR GRTGRAGR G   TL+ ++
Sbjct: 651 VLVATDVAARGIHVDDIDLVIQADAPDEYKTYLHRSGRTGRAGRSGTVVTLITRQ 705


>gi|149732732|ref|XP_001496163.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
           isoform 1 [Equus caballus]
          Length = 725

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 124/353 (35%), Positives = 199/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 304 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKE 363

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 364 LQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 423

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D  ++ K+ +  ++ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 424 PGRLMDIISKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 483

Query: 186 TMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+QK++  FL++    + V         ++   +    QYSK+  L++ L    D 
Sbjct: 484 TFPEEIQKLAGEFLKSKYLFVAVGQVGGACRDVQQTILQV-GQYSKREKLVEILRNIGD- 541

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 542 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 600

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 601 AARGLDIENVQHVINFDLPSAIDEYVHRIGRTGRCGNTGRAVSFFDPESDSHL 653


>gi|159482639|ref|XP_001699375.1| eukaryotic initiation factor [Chlamydomonas reinhardtii]
 gi|158272826|gb|EDO98621.1| eukaryotic initiation factor [Chlamydomonas reinhardtii]
          Length = 392

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 201/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   G+ KP+ IQ + +  ++Q  DV   AQ+GTGK++   +    +
Sbjct: 21  FDAMGLKEELLRGLYAYGFEKPSAIQQRAVLPIVQGRDVIAQAQSGTGKSSMISVSTCQL 80

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    + R  + LIL PTRELA Q        G   N+     +GG       +KLE G
Sbjct: 81  VD---VQQRECQVLILSPTRELAQQTEKVILAVGDFMNIQAHACVGGKSLGEDIRKLENG 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I+ L++DEAD ML   F   I +I   +P   Q +L
Sbjct: 138 VHVVSGTPGRVFDMIQRRNLRTRHIKTLILDEADEMLAKNFKDQIYDIYRYLPPETQVVL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P R+ V     T E I+  FVA   +   +   C L   L 
Sbjct: 198 VSATLPAEVLEMTNKFMTDPIRVLVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 256

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++
Sbjct: 257 ----TITQAVIFCNTKRKVDWLTEKMRQNNFTVASMHGDMVQKEREAIMGEFRSGAARVL 312

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  
Sbjct: 313 ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDIRILRD 372

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 373 IEQYYSTQIDEMPMNVAEL 391


>gi|116180670|ref|XP_001220184.1| cell cycle control protein-related [Chaetomium globosum CBS 148.51]
 gi|118593420|sp|Q2HFP1|IF4A_CHAGB RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|88185260|gb|EAQ92728.1| cell cycle control protein-related [Chaetomium globosum CBS 148.51]
          Length = 397

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 133/376 (35%), Positives = 214/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L  +++  +   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F    +++
Sbjct: 26  FDDMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATF---SISV 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    V+  + LIL PTRELA Q+       G   N+     IGG       K L+ G
Sbjct: 83  LQKIDPTVKSCQALILAPTRELAQQIQKVVIAIGDFMNIECHACIGGTSVRDDMKALQDG 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + +++ V+DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 143 PQVIVGTPGRVHDMIQRRILKTDQMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 203 LSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKE-DWKLDTLSDLYETV 261

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L+ + F+V A+HG++DQ  R  I+  F+ G+ ++++A+
Sbjct: 262 -TITQAVIFCNTRRKVDWLTDKLQARDFTVSAMHGDMDQTQRDLIMKEFRSGSSRVLIAT 320

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 321 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 380

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 381 FYSTQIEEMPMNVADL 396


>gi|321261169|ref|XP_003195304.1| hypothetical protein CGB_G4440W [Cryptococcus gattii WM276]
 gi|317461777|gb|ADV23517.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
          Length = 615

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 138/361 (38%), Positives = 201/361 (55%), Gaps = 20/361 (5%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FAD+ + PK + + L A G  +PTPIQ++ +P      D+ GIA TG+GKT +FVLP + 
Sbjct: 182 FADMKI-PKPILSYLQAKGIKRPTPIQMQGLPTAFSGRDMIGIAFTGSGKTLAFVLPAIM 240

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADN-------FEKYGKNYNLTVALLIGG 109
              +  ARV       P  LI+ P+RELA Q  +         ++ G    L   L IGG
Sbjct: 241 AALEMEARVPFVRGEGPVGLIICPSRELARQTYEQCVAVCAVLKESGNYPELRSLLCIGG 300

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           I    Q   L +G  V++ TPGR++D  ++ KL  +N + L +DEADRM+DMGF   +++
Sbjct: 301 ISMADQADVLNKGVHVVVATPGRLIDMLDKRKLNADNCKYLCMDEADRMIDMGFEEDVRS 360

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I S   + RQTLLFSATM  ++Q  ++  L NP  I VN   + A  ++   V    +Y 
Sbjct: 361 IMSHFKYQRQTLLFSATMPRKIQDFAQQSLINP--ILVNVGRAGAANMD---VIQEVEYV 415

Query: 230 KKCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           K+ A +  LL+  Q T    IIF + K  V ++   L  +G    AIHG+  Q  R   +
Sbjct: 416 KQEAKMVYLLECLQKTPPPVIIFSDNKNEVDDIQEYLLLKGVEAVAIHGSKTQEEREYAI 475

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +FK G   +MVAS +A++GLD  ++ HV  + +P   E+Y+H IGRTGR+G+ G A T 
Sbjct: 476 RSFKTGAKDVMVASGVASKGLDFNEIQHVIVYSMPKEIEDYVHEIGRTGRSGKTGLATTF 535

Query: 349 V 349
           V
Sbjct: 536 V 536


>gi|301785421|ref|XP_002928123.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 3
           [Ailuropoda melanoleuca]
          Length = 692

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 124/353 (35%), Positives = 198/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 271 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKE 330

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 331 LQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 390

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  ++ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 391 PGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 450

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   +    QYSK+  L++ L    D 
Sbjct: 451 TFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQV-GQYSKREKLVEILRNIGD- 508

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 509 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 567

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 568 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNHL 620


>gi|206971225|ref|ZP_03232176.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|206733997|gb|EDZ51168.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
          Length = 436

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 213/378 (56%), Gaps = 14/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L  
Sbjct: 6   FTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           +   R  V++   +I  PTRELA Q+ +   K  K    +  +T   LIGG   +   +K
Sbjct: 66  INASREEVQL---VITAPTRELAQQIYEEIVKLTKFCAADQMITARCLIGGTDKQRSIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ- 237
           Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +  ++  K  L+ + 
Sbjct: 183 QMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPS--KHRNKIDLVHKM 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ +  +   ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 241 LLQFKPYL--AVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|70943453|ref|XP_741771.1| ATP-dependent RNA helicase [Plasmodium chabaudi chabaudi]
 gi|56520361|emb|CAH82196.1| ATP-dependent RNA helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 557

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 129/386 (33%), Positives = 208/386 (53%), Gaps = 46/386 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F+DL     ++   L+  + +PT IQ  T P+ L   D+ G+A+TG+GKT +FVLP ++ 
Sbjct: 133 FSDLDFHESIL-NYLNENFKEPTAIQKITWPIALSGKDLIGVAETGSGKTLAFVLPCLMH 191

Query: 62  ILEKGRARV----------------------------------------RMPRTLILEPT 81
           IL+  +A +                                        R    LIL PT
Sbjct: 192 ILKHKQAEMEQNGGEHIKNNENKLSESNKNDNNYDPDFENEFQNEDNEDRKTYGLILLPT 251

Query: 82  RELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGK 141
           REL  QV +  +K+    +L    + GG+P   Q   +++GAD+++ TPGR+LD+   G 
Sbjct: 252 RELCMQVLNEIKKFENELDLKAVAVYGGVPKYFQINNIKKGADIIVATPGRLLDYLENGI 311

Query: 142 LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ- 200
           + +     +VIDEADR+LDMGF   ++ I + +   +Q L  +AT  ++++K++ +F   
Sbjct: 312 INLLRCIYVVIDEADRLLDMGFEKQLRKIMTQINKNKQLLFLTATWPEQVRKLAYDFCSF 371

Query: 201 NPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
           +P +I++     TA + IE   + + +   KK  L       ++     +IFC+ K+N  
Sbjct: 372 DPVKIQIGKSELTANKNIEQQVIVSSSIDLKKKLLDWLKDNYENNK--ILIFCDTKRNCD 429

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
           NLC  L    ++  +IHG+  QR R +IL+N+K     ++VA+D+A+RGLDI ++  V N
Sbjct: 430 NLCKELRYHQYNSLSIHGDKQQRERDRILNNYKNDRCNILVATDVASRGLDIKNISIVIN 489

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKA 345
           +D+PN  E+YIHRIGRTGRAG  GK+
Sbjct: 490 YDIPNTIEDYIHRIGRTGRAGNKGKS 515


>gi|326923424|ref|XP_003207936.1| PREDICTED: hypothetical protein LOC100542017, partial [Meleagris
            gallopavo]
          Length = 1461

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 135/375 (36%), Positives = 208/375 (55%), Gaps = 23/375 (6%)

Query: 3    FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
            F++  +S   V  +   G     P+Q+KT   V    DV   AQTGTGKT SF +P++  
Sbjct: 872  FSNFPISKGTVQLLQARGVTYLFPVQVKTFHPVYSGKDVIAQAQTGTGKTFSFAIPLIEK 931

Query: 63   LE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L+   + R R R P+ L+L PTRELA QVA +F+   +   LTVA   GG P+  Q   +
Sbjct: 932  LQADSQERRRGRSPKVLVLAPTRELANQVAKDFKDITRK--LTVACFYGGTPYNGQIDLI 989

Query: 120  ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
              G D+L+ TPGRI DH   GKL +  ++ +V+DE D+MLDMGF   +++I   V + + 
Sbjct: 990  RSGIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILR-VAYKKD 1048

Query: 179  -----QTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTAETIEHCFVATYAQYS 229
                 QTLLFSAT  + +  V++ ++++ K  +V+         A T+EH  +A    +S
Sbjct: 1049 SEDNPQTLLFSATCPNWVYDVAKKYMKS-KYEQVDLIGRRTQKAATTVEH--LAIECHWS 1105

Query: 230  KKCALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC-AIHGNIDQRSRMKI 287
            ++ A++  ++Q    +    I+FC  KK+   L  +L       C ++HG+I Q+ R   
Sbjct: 1106 QRAAVIGDVIQVYSGSHGRTIVFCETKKDANEL--ALNASIKQDCQSLHGDIPQKQREIT 1163

Query: 288  LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
            L  F+ G  +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G    
Sbjct: 1164 LKGFRNGAFKVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICIC 1223

Query: 348  LVAKEDIKHIDAIEK 362
               +++   +  +E+
Sbjct: 1224 FYQRKEENQLRYVEQ 1238


>gi|297739789|emb|CBI29971.3| unnamed protein product [Vitis vinifera]
          Length = 364

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 120/290 (41%), Positives = 165/290 (56%), Gaps = 16/290 (5%)

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
           AR   P  LIL PTREL+ Q+ D   K+     + V +  GG P   Q ++LERG D+L+
Sbjct: 12  ARTVYPLALILSPTRELSCQIHDEARKFSYQTGVKVVVAYGGAPINQQLRELERGVDILV 71

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV----PFTRQTLLF 183
            TPGR++D   R ++ +  I  L +DEADRMLDMGF P I+ I   +    P  RQT+LF
Sbjct: 72  ATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLF 131

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT   E+Q+++ +FL +   + V    S+ + I       +   S K + L  LL +Q 
Sbjct: 132 SATFPKEIQRLASDFLSSYIFLAVGRVGSSTDLIVQR--VEFVHESDKRSHLMDLLHAQR 189

Query: 244 TMKNG--------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              NG        ++F   KK   +L H L   GF    IHG+  Q+ R   L +FK G 
Sbjct: 190 A--NGAHGKQSLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQEREHALRSFKSGN 247

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G A
Sbjct: 248 TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLA 297


>gi|148687811|gb|EDL19758.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Mus musculus]
          Length = 855

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 132/355 (37%), Positives = 191/355 (53%), Gaps = 23/355 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 99  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 158

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K R+     R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 159 L-KARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHEN 217

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I   +P   QT+L
Sbjct: 218 PDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVL 277

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    L K+   F +    + V   +  A       V  Y        LLQ +++ Q
Sbjct: 278 FSAT----LPKLLVEFARAGSFLLVREDTKAA-------VLLY--------LLQNVVRPQ 318

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D     ++F   K +   L   L  QG S   I+  +DQ +R   L+ F       ++ +
Sbjct: 319 DQT---VVFVATKHHAEYLTELLMGQGVSCAHIYSALDQTARKINLAKFTHNKCSTLIVT 375

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA +++ ++
Sbjct: 376 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYL 430


>gi|260823718|ref|XP_002606227.1| hypothetical protein BRAFLDRAFT_287109 [Branchiostoma floridae]
 gi|229291567|gb|EEN62237.1| hypothetical protein BRAFLDRAFT_287109 [Branchiostoma floridae]
          Length = 564

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 121/356 (33%), Positives = 194/356 (54%), Gaps = 34/356 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  L+ ++   + D GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L  
Sbjct: 206 WKEASLTDEIDSIIKDLGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLIW 265

Query: 63  LEKGRARVR------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +E     VR       P  +IL PTRELA Q+ +   K+G+   +    +IGG+  E Q 
Sbjct: 266 IESLPKIVRNEDADQGPYAIILAPTRELAQQIEEETLKFGRRLGIRTVAVIGGLSREDQG 325

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            KL  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 326 FKLRMGCEIVIATPGRLIDVLENRYLVLSQCTYVVMDEADRMIDMGFEPDVQKILEYLPV 385

Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           T                         RQT++F+ATM  ++++++ ++L+ P  + + +  
Sbjct: 386 TNQKPDTEEAEDVEKLKANFSTKNKYRQTVMFTATMPPQVERLARSYLRRPAVVYIGSAG 445

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
              E  +   V    +  +K   L+++L ++      IIF NQKK    L  SLEK GF+
Sbjct: 446 KPTERTQQ--VVYLVKEGEKKNKLKEIL-NRGIEPPIIIFVNQKKGCDVLARSLEKMGFN 502

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            C +HG   Q  R   L+N K+G   ++VA+D+A RG+DI DV  V N+D+    E
Sbjct: 503 ACTLHGGKGQEQREFALNNLKQGAKDILVATDVAGRGIDIQDVSMVINYDMSKNIE 558


>gi|228954569|ref|ZP_04116594.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229081545|ref|ZP_04214043.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock4-2]
 gi|229180563|ref|ZP_04307905.1| ATP-dependent RNA helicase yqfR [Bacillus cereus 172560W]
 gi|229192495|ref|ZP_04319458.1| ATP-dependent RNA helicase yqfR [Bacillus cereus ATCC 10876]
 gi|228591072|gb|EEK48928.1| ATP-dependent RNA helicase yqfR [Bacillus cereus ATCC 10876]
 gi|228602987|gb|EEK60466.1| ATP-dependent RNA helicase yqfR [Bacillus cereus 172560W]
 gi|228701750|gb|EEL54238.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock4-2]
 gi|228805226|gb|EEM51820.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 436

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 213/378 (56%), Gaps = 14/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L  
Sbjct: 6   FTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           +   R  V++   +I  PTRELA Q+ +   K  K    +  +T   LIGG   +   +K
Sbjct: 66  INASREEVQL---VITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ- 237
           Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +  ++  K  L+ + 
Sbjct: 183 QMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPS--KHRNKIDLVHKM 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ +  +   ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 241 LLQFKPYL--AVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|33416833|gb|AAH55481.1| Ddx10 protein [Mus musculus]
          Length = 623

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 212/376 (56%), Gaps = 20/376 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P+L  
Sbjct: 13  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 72

Query: 63  LEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     R++   T     LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +
Sbjct: 73  L----YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE 128

Query: 118 KLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++    ++L+CTPGR+L H +        N+++LV+DEADR+LDMGF   +  I   +P 
Sbjct: 129 RIN-NINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPK 187

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCAL 234
            RQTLLFSAT T  ++ ++   L++P+ + V+  +  ST  T+E  ++    +  +K ++
Sbjct: 188 KRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYI--ICELHQKISV 245

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL--EKQGFSVCAIHGNIDQRSRMKILSNFK 292
           L   L+S    K  I+F +  K V  L       + G S+ A+HG   Q  RM++ + F 
Sbjct: 246 LFSFLRSH-LKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFV 304

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                ++ A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   
Sbjct: 305 RKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPS 364

Query: 353 DIKHIDAIEKLIEKKV 368
           + + +  +++L++KKV
Sbjct: 365 EEQGM--VQQLLQKKV 378


>gi|327554931|gb|AEB00819.1| vasa-like protein [Marsupenaeus japonicus]
          Length = 698

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 135/391 (34%), Positives = 215/391 (54%), Gaps = 28/391 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + L P ++  ++ AGY  PTP+Q  TIP V+   D+ G AQTG+GKTA+F+LPML  
Sbjct: 258 FQAMDLRPLLLENIVKAGYGCPTPVQKYTIPNVMNGRDIMGCAQTGSGKTAAFLLPMLHH 317

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           IL+             P  L++ PTRELA Q+     K+         +  GG     Q 
Sbjct: 318 ILDNNCPSHAFEEPAQPTGLVICPTRELAIQIMREARKFSHGSVAKCCVAYGGAAGFHQL 377

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K +  G  +L+ TPGR+LD   +GK++ +N++ LV+DEADRMLDMGF+  I+ + + +  
Sbjct: 378 KTMHNGCHILVATPGRLLDFVEKGKVVFSNLKYLVLDEADRMLDMGFLSSIKTVINHITM 437

Query: 177 T----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           T    R TL+FSAT  +E+Q+++  FL N   + V +  +    ++   V + +++ KK 
Sbjct: 438 TPTEERITLMFSATFPNEIQELASVFLNNYLFVVVGSVGAANTDVKQ-EVLSVSKFDKKA 496

Query: 233 ALLQQ----LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            L++     L+ S+D  +  ++F  QK+    +   L ++ F    +HG+  Q  R + L
Sbjct: 497 KLVEMCEEILINSED--EKILVFVEQKRVADFVGSYLCEKKFRATTMHGDRFQAQREQAL 554

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF-- 346
           + F+ G   ++VA+ +AARGLDI  +G V N+D+P   + Y+HRIGRTGR G  G +   
Sbjct: 555 AAFRTGVHNILVATAVAARGLDIKGIGVVVNYDLPKEIDEYVHRIGRTGRLGNRGMSISF 614

Query: 347 ------TLVAKEDIKHIDAIEKLIEKKVDWL 371
                 T + K+ +K +   E+ +    DWL
Sbjct: 615 YDEEVDTCLTKDLVKVLSEAEQTVP---DWL 642


>gi|47567847|ref|ZP_00238555.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|47555524|gb|EAL13867.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
          Length = 436

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 214/378 (56%), Gaps = 14/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L  
Sbjct: 6   FTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           +   R  V++   +I  PTRELA Q+ +   K  K    +  +T   LIGG   +   +K
Sbjct: 66  INASREEVQL---VITAPTRELAQQIYEEIVKLTKFCSEDQIITARCLIGGTDKQRSIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LKKQPHIVVGTPGRIKDLVEAQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ- 237
           Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +  ++  K  L+++ 
Sbjct: 183 QMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPS--KHRNKIDLVKRM 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ +  +   ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 241 LLQFKPYL--AVVFTNTKKMADQVADGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRNIEFKHVDL 374


>gi|324504040|gb|ADY41744.1| ATP-dependent RNA helicase DDX42 [Ascaris suum]
          Length = 808

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 126/355 (35%), Positives = 199/355 (56%), Gaps = 8/355 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA  G    ++  +  + Y  PT IQ +++P  L   DV GIA+TG+GKT +++ P +  
Sbjct: 275 FAHFGFDEALMNTIRKSEYEHPTAIQAQSVPAALSGRDVLGIAKTGSGKTVAYLWPAIVH 334

Query: 62  ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I+++ + +    P  LI+ PTRELA QV    +++ K YN+ V    GG     Q   L+
Sbjct: 335 IMDQPQLKEGDGPIALIVVPTRELAIQVYQEAKRFCKVYNIAVVCAYGGGSKWEQQNALK 394

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA++++ TPGRI+D           +  LV DEADRM DMGF   +++I+  +   RQ 
Sbjct: 395 EGAELVVATPGRIIDLVKIEATNFTRVTFLVFDEADRMFDMGFEAQVKSISDHIRPDRQC 454

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT   ++++++ + L +P RI         E +        +  +K   LLQ+L+Q
Sbjct: 455 LMFSATFKAKVERLARDALVDPVRIVQGEVGEANEDVIQNVEVLPSVDAKWRWLLQRLVQ 514

Query: 241 SQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               +  G  +IF  +K+N   +   L+   F++  +HG++ Q  R + L  F++ T  L
Sbjct: 515 ---FLAQGKVLIFVTKKQNAEEVAQRLQTNDFALVLLHGDMLQAERNEKLHAFRKDTA-L 570

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           MVA+D+AARGLDIP++  V NFD+    + ++HRIGRTGRAG  G A+TL+   D
Sbjct: 571 MVATDVAARGLDIPEIRTVINFDLARDIDTHVHRIGRTGRAGEKGYAYTLLTDAD 625


>gi|302765659|ref|XP_002966250.1| hypothetical protein SELMODRAFT_85554 [Selaginella moellendorffii]
 gi|302801131|ref|XP_002982322.1| hypothetical protein SELMODRAFT_116103 [Selaginella moellendorffii]
 gi|300149914|gb|EFJ16567.1| hypothetical protein SELMODRAFT_116103 [Selaginella moellendorffii]
 gi|300165670|gb|EFJ32277.1| hypothetical protein SELMODRAFT_85554 [Selaginella moellendorffii]
          Length = 411

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 199/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 40  FDSMGLHENLLRGIYAYGFEKPSTIQQRGIVPFCKGIDVIQQAQSGTGKTATFCSGILQQ 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+      +    L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 100 LDYNNVECQ---ALVLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTDVRQDQRILQAG 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  L
Sbjct: 157 VHVVVGTPGRVYDMLRRRALRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 217 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLA 276

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IFCN ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 277 ITQ-----SVIFCNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 331

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   + +ED + +  
Sbjct: 332 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFMVREDERMLHD 391

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     ++ L  +++ L
Sbjct: 392 IQKFYNTVIEELPNNVADL 410


>gi|302691820|ref|XP_003035589.1| hypothetical protein SCHCODRAFT_65225 [Schizophyllum commune H4-8]
 gi|300109285|gb|EFJ00687.1| hypothetical protein SCHCODRAFT_65225 [Schizophyllum commune H4-8]
          Length = 397

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 207/368 (56%), Gaps = 5/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L P+++  +   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F    ++
Sbjct: 25  NFDNMNLKPELLRGIYAYGFERPSAIQQRAIVPVVKGHDVIAQAQSGTGKTATF---SIS 81

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    ++  + LIL PTRELA Q+       G   N+     +GG        KL+ 
Sbjct: 82  ILQQLDMSIKGTQALILAPTRELAQQIQKVVIALGDYMNIECHACVGGTVVREDIAKLQE 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L  +NI+I  +DEAD ML  GF   I  +  L+P   Q +
Sbjct: 142 GVHVVVGTPGRVHDMINRRALRTDNIKIFCLDEADEMLSRGFKDQIYEVFQLLPQDIQVV 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+ +V++ F++ P RI V     T E I+  ++A   +  K   L    L  
Sbjct: 202 LLSATMPAEVLEVTKKFMREPVRILVKRDELTLEGIKQFYIAVEREEWKLDTLCD--LYE 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   +  + F+V A+HG+++Q+ R  ++  F+ G+ ++++ 
Sbjct: 260 TVTITQAVIFCNTRRKVDWLTEKMHAREFTVSAMHGDMEQKQREVLMKEFRSGSSRVLIT 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 320 TDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTTDDVRMLRDIE 379

Query: 362 KLIEKKVD 369
           +    ++D
Sbjct: 380 QFYNTQID 387


>gi|56963462|ref|YP_175193.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
 gi|56909705|dbj|BAD64232.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
          Length = 453

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 135/409 (33%), Positives = 221/409 (54%), Gaps = 12/409 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL+ +++  +   G  +PT IQ + IP +L R DV G +QTGTGKT +F+LP++  
Sbjct: 6   FSRLGLNERLLKGLSAIGVKRPTEIQERLIPAILNRKDVIGQSQTGTGKTFAFLLPIIEQ 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKLE 120
           L+  +  V+    +I  PTREL AQ+ D  +K    Y+  +   L +GG   + Q ++L 
Sbjct: 66  LDIEQNEVQ---AVITAPTRELCAQLFDELKKLIVYYDGQVDAQLFVGGTDRKRQAQRLS 122

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   ++I TPGRI D  N   LL+   + LV+DEAD+MLDMGF+  +  +   +    Q
Sbjct: 123 TKQPHIVIGTPGRIADLVNTSSLLVYTAKTLVVDEADQMLDMGFLEDVDKVAGRLAEDLQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+ ++LQ   + ++ NP+ + V      AE + H  V    ++  K  +L++ +
Sbjct: 183 MLVFSATVPEKLQPFLKKYMNNPRHVHVQPEKLAAERVTHQLVPV--RHRDKLTVLKETI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +     IIF N K+    +  +L  +   V  +HG +  R R K++   ++ +IQ +
Sbjct: 241 RGLNPYL-AIIFTNTKEQADEVTAALATEDILVDCLHGGLAPRERKKVMKRVEDLSIQYL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID- 358
           VA+DLAARG+DI  V H+ N+  P   + Y+HR+GRT RAG  G A +L  + D      
Sbjct: 300 VATDLAARGIDIKGVTHIINYAFPQDLDFYVHRVGRTARAGADGIALSLYEQSDEAACAK 359

Query: 359 -AIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTG 405
            A   ++   V++ +G+ + L  PP+    I +     K     +K TG
Sbjct: 360 LASRGIVFSFVEFKDGEWTELVKPPVGAGRINRKQPTDKGKATVEKQTG 408


>gi|316971006|gb|EFV54849.1| eukaryotic initiation factor 4A [Trichinella spiralis]
          Length = 465

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 127/383 (33%), Positives = 197/383 (51%), Gaps = 12/383 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  V   G+ KP+ IQ   I    QR DV   AQ+GTGKTA+F + +L  
Sbjct: 87  FEKMGLREELLRGVFAYGFEKPSVIQQLAIVPCCQRRDVIAQAQSGTGKTATFAIGLL-- 144

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            ++        + L++ PTRELA Q+       G +  + V   IGG       +KL +G
Sbjct: 145 -QQINTDFNDCQALVMAPTRELAQQIQKVILALGDHMGVKVLTCIGGTSVATNREKLGQG 203

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V + TPGR+LD      L    I+  V+DEAD ML  GF   I  +   +P   Q +L
Sbjct: 204 CHVAVGTPGRVLDMIRGHHLQTKGIKTFVLDEADEMLSRGFKQQIHEVFEFMPADVQVVL 263

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM DE+ +V+  F+ NP RI V     T + I   ++    +  K   L    + + 
Sbjct: 264 LSATMPDEVLQVTTKFMNNPVRILVRKEELTLDGIRQFYIEVGREEWKLDTLCD--IYTT 321

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            ++   +IFCN ++ V  L   L  + F+V  +HG++ Q+ R  I+  F+ G+ ++++++
Sbjct: 322 LSISKAVIFCNSRQKVEKLARELTDRKFTVTCMHGDMTQQDRDVIMQQFRTGSSRVLIST 381

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHR-------IGRTGRAGRHGKAFTLVAKEDIK 355
           DL ARG+DI  V  V N+D+P+  ENYIHR       IGR+GR GR G A   V + D +
Sbjct: 382 DLLARGIDIQQVSIVINYDIPHNRENYIHRYEQPAVFIGRSGRFGRVGVAINFVTENDKR 441

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
            +  IE+     +  +  D+  +
Sbjct: 442 MMKDIEEFYHTNIRQMPADIEKV 464


>gi|159040130|ref|YP_001539383.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           arenicola CNS-205]
 gi|157918965|gb|ABW00393.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
           CNS-205]
          Length = 453

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 125/364 (34%), Positives = 184/364 (50%), Gaps = 7/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLG+   +   +  AG  +P PIQ  T+P  L   DV G  +TG+GKT +FVL +L
Sbjct: 5   LTFTDLGVPDTLDRLLSAAGVERPFPIQAATLPDALAGRDVLGRGRTGSGKTYAFVLAVL 64

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           T L       R   PR LIL PTRELA Q+        +  +L   ++ GG+    Q   
Sbjct: 65  TRLAASATSRRAGRPRALILVPTRELATQIDSVMAPLARALSLRTMVVFGGVAARPQITG 124

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G DVL+  PGR+ DH   G   ++ +EI V+DEAD M D+GF+P ++ +    P   
Sbjct: 125 LRAGVDVLVACPGRLADHVQAGNAHLDAVEITVLDEADHMADLGFLPTVRRLLERTPHRG 184

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT+   +  +   FL NP    V++  S    + H  +  +A    + A+L +L
Sbjct: 185 QRLLFSATLDSGVDVLVRRFLTNPVTHSVDSTLSPVAAMTHHILHVHAD--DRFAVLVEL 242

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +       ++F   K+    L   L   G +   +HGN+ Q +R + L  F  G    
Sbjct: 243 TAAP---SRTVVFTRTKRGARTLARRLAAAGVTAVELHGNLAQGARTRNLRAFATGEAHT 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+ I DV  V + D P   + Y+HR GRT RAG  G   TL+    +  + 
Sbjct: 300 LVATDIAARGIHIDDVALVVHADPPVEHKAYLHRSGRTARAGADGTVVTLMTDGQVAEVR 359

Query: 359 AIEK 362
           A+ +
Sbjct: 360 ALTR 363


>gi|66825125|ref|XP_645917.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           discoideum AX4]
 gi|1688326|gb|AAB36962.1| IfdA [Dictyostelium discoideum]
 gi|60473986|gb|EAL71923.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           discoideum AX4]
          Length = 395

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 198/376 (52%), Gaps = 7/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L   ++  +   G+ KP+ IQ + I  + +  D+   AQ+GTGKTA+F + +L+ 
Sbjct: 26  FDNMELPKDLLRGIYSYGFEKPSAIQQRAIIPLSKGFDIIAQAQSGTGKTATFTVGILSR 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     V   + LI+ PTRELA Q+       G+  ++     IGG       + L+ G
Sbjct: 86  ID---ISVLKCQALIIAPTRELAQQIQKVVLALGEYLHIKSYACIGGTKITDDIQALQSG 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ +  +RG +  + I I  +DEAD ML  GF   I  I   +P T Q  L
Sbjct: 143 VHVVVGTPGRVFEMLSRGIINRDTIRIFCLDEADEMLSRGFKDQIYEIFRFLPKTIQVGL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATMTDE   ++  F+QNP  I V     T E I   +V    +   K  +L  L ++ 
Sbjct: 203 FSATMTDETLGITSKFMQNPVSILVKKDELTLEGIRQFYVNVGVE-QGKFEVLTDLYETL 261

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            ++   +IFCN ++ V  L   + +Q F+V + HG  DQ+ R  IL  F+ G  ++++ +
Sbjct: 262 -SITQSVIFCNTRRKVDWLTSKMTEQKFTVSSTHG--DQKDRDGILQAFRSGATRVLITT 318

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V NFD+P   ENYIHRIGR+GR GR G A   +   +   ID + +
Sbjct: 319 DLLARGIDVQQVSLVINFDLPTNIENYIHRIGRSGRFGRKGVAINFITDAERGQIDELSR 378

Query: 363 LIEKKVDWLNGDLSSL 378
                +  +  D+ S 
Sbjct: 379 HYNTYIAEMPQDIGSF 394


>gi|301755882|ref|XP_002913779.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Ailuropoda
           melanoleuca]
          Length = 739

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 205/353 (58%), Gaps = 17/353 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ+KT   V +  D+   A+TGTGKT SF +P++  
Sbjct: 141 FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 200

Query: 63  LEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ +  +   R P+ L+L PTRELA QVA +F+   +   L+VA   GG  +++Q   +
Sbjct: 201 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 258

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   G+L ++ +  +V+DE D+MLD+GF   +++I      T  
Sbjct: 259 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 318

Query: 179 ----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
               QTLLFSAT    + KV++ ++++  +++++        A T+EH  +A    +S++
Sbjct: 319 EDNPQTLLFSATCPPWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEH--LAIQCHWSQR 376

Query: 232 CALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A++  +LQ    +    IIFC  KKNV  +  +   +  + C +HG+I Q  R   L  
Sbjct: 377 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKG 435

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           F+EG+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 436 FREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 488


>gi|332821347|ref|XP_003310753.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 1 [Pan
           troglodytes]
          Length = 690

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 198/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 269 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKE 328

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 329 LQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 388

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 389 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPKMKKLISCPGMPSKEQRQTLMFSA 448

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   V    Q+SK+  L++ L    D 
Sbjct: 449 TFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQT-VLQVGQFSKREKLVEILRNIGD- 506

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 507 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 565

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 566 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHL 618


>gi|332141363|ref|YP_004427101.1| ATP-dependent RNA helicase, DEAD box family protein [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551385|gb|AEA98103.1| ATP-dependent RNA helicase, DEAD box family protein [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 441

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 128/365 (35%), Positives = 200/365 (54%), Gaps = 7/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M  +DL +  K++  +        T IQ +T+   +Q  D+   ++TG+GKT +F++P +
Sbjct: 1   MLVSDLPVHHKIISKLESKNISTLTEIQERTMLPAIQGKDIIASSKTGSGKTFAFLVPAI 60

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L   +A  R  PR LIL PTRELA QV    +      NLT +L++GG  +  Q K L
Sbjct: 61  NRLMAQKALSRQDPRALILAPTRELAKQVFIEAKSMCTGLNLTCSLIVGGENYNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TR 178
            R   +++ T GR+ DH     + +N +E+L+ DEADRMLD+GF   ++ I        R
Sbjct: 121 RRNPHIIVGTAGRVADHLLDKSVYLNGLELLIFDEADRMLDLGFSAQLKMINDYADHRKR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQ 236
           QT+LFSAT+ + EL+ ++    +   R+ V   ++    IE  CF A       K  +LQ
Sbjct: 181 QTMLFSATLDNIELKHMTTQLTKGAVRVAVGDSTAEHGDIEQKCFFAD--NVDNKDQILQ 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L ++ T    I+F   +++   +   L +Q     A+ G++ Q  R  ++S F  G  
Sbjct: 239 FELANR-TYNQAIVFTATREDTDRIAALLNEQNLEAIALRGDMLQSQRAAVMSAFARGQH 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++V +DLA+RGLD+  VG V NFD+P  A+ YIHRIGRTGRAG+ G+AF+L+   D   
Sbjct: 298 SILVTTDLASRGLDLSKVGLVVNFDLPKNADEYIHRIGRTGRAGQKGEAFSLIGPRDWNS 357

Query: 357 IDAIE 361
            + ++
Sbjct: 358 FEGLK 362


>gi|330859827|emb|CBX70159.1| ATP-dependent RNA helicase rhlB [Yersinia enterocolitica W22703]
          Length = 382

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 124/328 (37%), Positives = 191/328 (58%), Gaps = 11/328 (3%)

Query: 41  VCGIAQTGTGKTASFVLPMLTIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKY 95
           V G AQTGTGKT +F+      L     E+GR +   PR LI+ PTRELA Q+  + E  
Sbjct: 3   VAGQAQTGTGKTLAFLASTFHYLLSHPAEEGR-QTNQPRALIMAPTRELAVQIHSDAESL 61

Query: 96  GKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEA 155
            +   L + L  GG  ++ Q K LE G D+LI T GR++D+  +  + +  I+++V+DEA
Sbjct: 62  SQVTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEA 121

Query: 156 DRMLDMGFIPYIQNITSLVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
           DRM D+GFI  I+ +   +P    R  +LFSAT++  +++++   + N + +EV     T
Sbjct: 122 DRMYDLGFIKDIRWLFRRMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKT 181

Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
              I+      Y    +K  LLQ L++ ++     IIF N K     +   L   G  V 
Sbjct: 182 GHRIQEELF--YPSNEEKMRLLQTLIE-EEWPDRCIIFANTKHRCEEIWGHLAADGHRVG 238

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            + G++ Q+ R++IL +F +G + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRI
Sbjct: 239 LLTGDVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRI 298

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           GRTGRAG  G + +L  +E   ++ AIE
Sbjct: 299 GRTGRAGESGHSISLACEEYALNLPAIE 326


>gi|195970701|gb|ACG60739.1| probable DEAD-box RNA helicase [Streptomyces flavoviridis]
          Length = 498

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 123/347 (35%), Positives = 185/347 (53%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +  +++ A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 71  FADLDMPGELLAALGKDGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 130

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y ++  L +A ++GG+    Q   L  G
Sbjct: 131 TAGRRAEPRQPLGLVLVPTRELAQQVTDALTPYARSVKLRLATVVGGMSIGRQASALRGG 190

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A++++ TPGR+ D  +RG   +N I I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 191 AEIVVATPGRLKDLIDRGDCRLNQISITVLDEADQMADMGFLPQVTALLDQVRPEGQRML 250

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  +    T+EH  +  +   + K A   ++    
Sbjct: 251 FSATLDRNVDLLVRRYLTDPVVHSVDPSAGAVTTMEHHVL--HVHGADKHAATTEIAARD 308

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F + K  V  L   L   G    A+HG   Q  R + L+ FK G + ++VA+
Sbjct: 309 GRV---IMFLDTKHAVDRLTRDLLNSGVRAAALHGGKSQPQRTRTLTQFKTGHVTVLVAT 365

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 366 NVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLV 412


>gi|216548263|ref|NP_001136021.1| probable ATP-dependent RNA helicase DDX4 isoform 2 [Homo sapiens]
          Length = 690

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 198/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 269 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKE 328

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 329 LQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 388

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 389 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 448

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   V    Q+SK+  L++ L    D 
Sbjct: 449 TFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQT-VLQVGQFSKREKLVEILRNIGD- 506

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 507 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 565

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 566 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHL 618


>gi|309361517|emb|CAP29330.2| hypothetical protein CBG_09775 [Caenorhabditis briggsae AF16]
          Length = 820

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 129/366 (35%), Positives = 205/366 (56%), Gaps = 5/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA       ++ A+  + Y +PTPIQ   IP  L   DV GIA+TG+GKTA+++ P +  
Sbjct: 271 FAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVH 330

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
           T+ +        P  +I+ PTRELA QV    +++ K YN+ V    GG   +E  N+  
Sbjct: 331 TMDQPDLKEGEGPVAVIVVPTRELAIQVYQEAKRFCKVYNINVICAYGGGSKWEQSNELQ 390

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA++++CTPGRI+D              LV DEADRM DMGF   +++I+  V   RQ
Sbjct: 391 NEGAEMVVCTPGRIIDLVKMEATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPDRQ 450

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT   ++++++ + L +P RI           IE        Q  K   L++ L+
Sbjct: 451 CLMFSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVYVMQNQDVKFHWLIRNLV 510

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   ++   +IF  +K +  +L   L+ + F +  +HG++ Q  R + L  F++ + Q++
Sbjct: 511 EFA-SLGKVLIFVTKKLDSEDLAKKLKLKDFDIVLLHGDMLQAERNENLLKFRKKS-QIL 568

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++  V NFD+    + ++HRIGRTGRAG  G A+TLV ++DI+ +  
Sbjct: 569 VATDVAARGLDISEIRTVVNFDMARDIDTHVHRIGRTGRAGHRGTAYTLVTEKDIETVGH 628

Query: 360 IEKLIE 365
           + K +E
Sbjct: 629 LVKNLE 634


>gi|145517995|ref|XP_001444875.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412308|emb|CAK77478.1| unnamed protein product [Paramecium tetraurelia]
          Length = 813

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 133/336 (39%), Positives = 195/336 (58%), Gaps = 20/336 (5%)

Query: 24  PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRE 83
           PTPIQ    PL+L+  DV  IA+TG+GKT ++ LP + I  + + +V  PR L+L PTRE
Sbjct: 455 PTPIQKAIFPLILEGRDVIAIAETGSGKTLAYALPGI-IHSQAQPKVLGPRILVLAPTRE 513

Query: 84  LAAQVADNFEKY--------GKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           LA Q+   +E +        G   NL  + ++G    E++NK       V+I TPGR+LD
Sbjct: 514 LAQQIQSQYELFTRTCCVYGGVFKNLQYSEILG--IKESRNKI--NLPSVIISTPGRLLD 569

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
            F +  L +N+I  +V+DEADRMLDMGF   I  I S V   RQTL FSAT  +E+Q+++
Sbjct: 570 -FMKDGLPLNSITQVVLDEADRMLDMGFEDQITQILSAVRDDRQTLFFSATWPNEVQRLA 628

Query: 196 ENFL-QNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
            +   Q+P  I++     S  + I+   +  Y    +K A L   L+ Q  +    IFC 
Sbjct: 629 NSLCNQDPIMIQLGEQGLSVNKNIQQEVIIVYENKFEKFAELTDRLKGQKLL----IFCQ 684

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
           +K +   L + L   G     +HG++ Q  R +I+  FK G I  ++ ++LA+RGLD+ D
Sbjct: 685 KKLDTQKLEYRLSIHGLKARYLHGDLKQAERDQIMVEFKSGAINCLITTNLASRGLDVSD 744

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           V  V N+D P+  E+YIHRIGRTGRAG+ G+A +L+
Sbjct: 745 VDVVINYDFPDTIEDYIHRIGRTGRAGKKGQAISLL 780


>gi|17507945|ref|NP_491962.1| hypothetical protein H27M09.1 [Caenorhabditis elegans]
 gi|7206748|gb|AAF39907.1| Hypothetical protein H27M09.1 [Caenorhabditis elegans]
          Length = 630

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 133/344 (38%), Positives = 191/344 (55%), Gaps = 15/344 (4%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI-LEKGRA----RVRMPR 74
           G V PT IQI+ IP+ L   D+ GIA TG+GKT +FVLP++   LE+       R   P 
Sbjct: 209 GIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPF 268

Query: 75  TLILEPTRELAAQVAD----NFEKYGKNY--NLTVALLIGGIPFEAQNKKLERGADVLIC 128
            LI+ P+RELA Q+ D     F+  GK     +   L IGG+P   Q K +  G  +++ 
Sbjct: 269 GLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGGVPIGEQAKDVRDGIHIVVA 328

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR+ D   +  + +     LV+DEADRMLDMGF   I++I       RQTLLFSATM 
Sbjct: 329 TPGRLSDMLTKKIINLEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQRQTLLFSATMP 388

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
            ++Q  +++ L  P  I VN   + A ++       + +   K   + + LQ   T    
Sbjct: 389 RKIQFFAKSALVKP--IVVNVGRAGAASLNVLQELEFVRSENKLVRVLECLQK--TSPKV 444

Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           +IF  +K +V N+   L  +G  V +IHG  DQ  R   +  F++    ++VA+D+A++G
Sbjct: 445 LIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVLVATDVASKG 504

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           LD   + HV NFD+P   ENY+HRIGRTGR+GR G A T + K+
Sbjct: 505 LDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFINKK 548


>gi|259047162|ref|ZP_05737563.1| DEAD/DEAH box family ATP-dependent RNA helicase [Granulicatella
           adiacens ATCC 49175]
 gi|259036212|gb|EEW37467.1| DEAD/DEAH box family ATP-dependent RNA helicase [Granulicatella
           adiacens ATCC 49175]
          Length = 462

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 131/384 (34%), Positives = 208/384 (54%), Gaps = 19/384 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P +  A+ D  + +PTPIQ + IPL+L+   V G +QTG+GK+ SF+LP++
Sbjct: 29  MKFTDYALQPYLQKALADLKFTQPTPIQERIIPLLLKGESVIGQSQTGSGKSHSFLLPLI 88

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQ---VADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             ++  R  +++   +I  P+RELA Q   VA     +  +  + +   IGG   + Q  
Sbjct: 89  NKIDPSRQELQL---VITVPSRELAEQLTAVAAQLITFS-DTEILLEKCIGGTDKKRQVA 144

Query: 118 KL-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           KL +    ++I TPGRI D      L +  ++++V+DEAD   D+GF+  +  I S +P 
Sbjct: 145 KLTQTQPHIVIGTPGRIFDLMQENALFVQTVQMMVVDEADMTFDLGFLETVDEIASRMPE 204

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q  +FSAT+ D+++   + +L NPK I++      + TI++  + T AQ      +L+
Sbjct: 205 NLQMSVFSATIPDKIRPFLKKYLGNPKVIQIENTQLVSPTIKNQLLVTKAQ--NPMDVLR 262

Query: 237 QLLQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           QLL     M +    +IF N K+    +   L    F V  IHG+I  R R +++   ++
Sbjct: 263 QLL----VMGHPYLVLIFVNTKQKADEVTKDLRNHNFKVATIHGDIPSRERRRVMKQIQQ 318

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
              Q +VA+DLAARG+DI  V HV N ++P   E +IHR+GRTGR G  G A T    + 
Sbjct: 319 MDYQFVVATDLAARGIDIEGVSHVINLEIPGELEFFIHRVGRTGRNGLEGTAITFYTPDQ 378

Query: 354 IKHIDAIE--KLIEKKVDWLNGDL 375
            + I  +E   +  + V+  NG+L
Sbjct: 379 EQAIQTLEGKGISFETVELKNGEL 402


>gi|229031934|ref|ZP_04187921.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1271]
 gi|228729398|gb|EEL80388.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1271]
          Length = 436

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 213/378 (56%), Gaps = 14/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L  
Sbjct: 6   FTQYDFKPFLIDAVRELRFTEPTGIQKKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           +   R  V++   +I  PTRELA Q+ +   K  K    +  +T   LIGG   +   +K
Sbjct: 66  INASREEVQL---VITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPRNL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ- 237
           Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +  ++  K  L+ + 
Sbjct: 183 QMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPS--KHRNKIDLVNKM 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ +  +   ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 241 LLQFKPYL--AVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|21229902|ref|NP_635819.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66766780|ref|YP_241542.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188989854|ref|YP_001901864.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21111409|gb|AAM39743.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572112|gb|AAY47522.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167731614|emb|CAP49789.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris]
          Length = 430

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 130/370 (35%), Positives = 192/370 (51%), Gaps = 18/370 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           D   L L P    A+  AG    TPIQ+  IP +L   D+   AQTG+GKT ++ LP+L 
Sbjct: 6   DLLSLQLQPVFESALARAGVRALTPIQVAMIPPMLAARDLIATAQTGSGKTLAYALPLLQ 65

Query: 62  ILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQN 116
             ++ +A  + PR L   IL PTREL AQVA             L +    GG     Q 
Sbjct: 66  --QRLQAPEQAPRVLGGLILVPTRELVAQVAHTLLSLAAALPRRLKIVAATGGEAINPQL 123

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GAD++I TPGR+LD      L ++ +  LV+DEADR+LD+GF   +  I +L+P 
Sbjct: 124 MALRGGADIVIATPGRLLDLVTHNALRLSQVSTLVLDEADRLLDLGFGAELDRILALLPA 183

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ++L SAT    +  +++  L++P RI +      A  I    +A  A   ++  LL+
Sbjct: 184 QRQSVLVSATFPAAIASLAKRRLRDPLRITLGGTPEQAPAIAQRAIAVDA--GQRTQLLR 241

Query: 237 QLLQSQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL     +++G    ++F   +     +   L K G +   +HG + Q  R + L  FK
Sbjct: 242 HLL-----LEHGWPQLLVFVTSRHGADKVAEKLSKTGIAALPLHGELSQGRRERTLRAFK 296

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +  +Q++VA+DLA RG+DI  +  V N+D+P    +Y HRIGRT RAG  G A + V  +
Sbjct: 297 QADVQVLVATDLAGRGIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGVAISFVTAD 356

Query: 353 DIKHIDAIEK 362
             +    IEK
Sbjct: 357 SAQQWRLIEK 366


>gi|322495006|emb|CBZ30309.1| putative ATP-dependent RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 804

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 124/359 (34%), Positives = 197/359 (54%), Gaps = 6/359 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ A+L  G+  PTPIQ K IP +LQ +DV  +A+TG+GKTA+F++PML  
Sbjct: 24  FQSFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLNT 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  +++   R L+L PTREL+ Q+  N     K  +L  A L+GG   + Q + L   
Sbjct: 84  L-KAHSKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDSMDQQFELLASN 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+L       L + ++  LV+DEADR+ ++G  P I  I   +P + Q  L
Sbjct: 143 PDIVVATPGRLLHIMEEASLHLTSVRCLVLDEADRLFELGLQPQIGAIMQKLPESCQRAL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCALLQQLLQ 240
           FSATM   L + +   L NP  I +++    ++ ++     V    + +    LL+++L 
Sbjct: 203 FSATMPTVLAEFTSAGLHNPVVIRLDSEMKLSDQLKQSAFLVRNDEKVAALIVLLKRVLH 262

Query: 241 SQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             +   N    +IF   K +V  L   L     S  A+HG +DQ +R   + +F +    
Sbjct: 263 VGEAAANNAQALIFVESKFHVEFLQMILTAYSISTSAVHGQMDQEARRLAVRSFAKRETS 322

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +MV +D+AARGLD+P + +V NF  P   + ++HR+GR  RAGR G A++++  ED  +
Sbjct: 323 VMVVTDVAARGLDLPLLDNVVNFSFPFNPKLFVHRVGRVARAGRSGTAYSIMTFEDFPY 381


>gi|126274019|ref|XP_001387376.1| Eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Scheffersomyces
           stipitis CBS 6054]
 gi|146324945|sp|A3GFI4|IF4A_PICST RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|126213246|gb|EAZ63353.1| Eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Pichia stipitis
           CBS 6054]
          Length = 397

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 134/377 (35%), Positives = 203/377 (53%), Gaps = 7/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L P +V  +   GY  P+ IQ + I  + +  DV   AQ+GTGKTA+F +  L  
Sbjct: 25  FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQR 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++     +  + LIL PTRELA Q+ +     G   N+TV   IGG   +   +    G
Sbjct: 85  IDENE---KSTQALILAPTRELALQIKNVITSIGLYLNVTVHASIGGTSMQDDIEAFRSG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R       +++ ++DEAD ML  GF   I NI  L+P T Q +L
Sbjct: 142 VQVVVGTPGRVFDMIERRYFKTEKVKMFIMDEADEMLSSGFKEQIYNIFRLLPETTQVVL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQLLQS 241
            SATM  ++ +V+  F+ NP RI V     T E I+  ++      Y   C  L  L  S
Sbjct: 202 LSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVELEDYKFDC--LCDLYDS 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN +  V  L   L+ + F+V AIH ++ Q  R  I+  F+ G+ ++++A
Sbjct: 260 I-SVTQAVIFCNTRSKVEFLTTKLKAENFTVSAIHADLPQAERDTIMKEFRSGSSRILIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V + D+  +  IE
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGVAINFVTERDVGMMREIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  D+ +L
Sbjct: 379 QFYSTQIEEMPADIGAL 395


>gi|78046026|ref|YP_362201.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78034456|emb|CAJ22101.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 453

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 131/370 (35%), Positives = 194/370 (52%), Gaps = 18/370 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           D   L L P    A+  AG    TPIQ+  IP +L   D+   AQTG+GKT ++ LP+L 
Sbjct: 29  DLLSLQLQPVFESALARAGVHALTPIQVAMIPPMLAARDLIATAQTGSGKTLAYALPLL- 87

Query: 62  ILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQN 116
            L++ +A  + PR L   IL PTREL AQVA             L +    GG     Q 
Sbjct: 88  -LQRLQAPEQAPRVLGGLILVPTRELVAQVAQTLLSLAAALPRRLKIVAATGGEAINPQL 146

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GAD++I TPGR+LD      L ++ +  LV+DEADR+LD+GF   +  I +L+P 
Sbjct: 147 MALRGGADIVIATPGRLLDLVTHNALRLSQVSTLVLDEADRLLDLGFGAELDRILALLPA 206

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ++L SAT    +  +++  L++P RI  +     A +I    +A  A   ++  LL+
Sbjct: 207 QRQSVLVSATFPAAIASLAKRRLRDPLRITHDAMPEQAPSITQRAIAVDA--GQRTQLLR 264

Query: 237 QLLQSQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL     +++G    ++F   +     +   L K G +   +HG + Q  R + L  FK
Sbjct: 265 HLL-----LEHGWPQLLVFVASRHGADKVAEKLSKTGIAALPLHGELSQGRRERTLRAFK 319

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +  +Q++VA+DLA RG+DI  +  V N+D+P    +Y HRIGRT RAG  G A + V  +
Sbjct: 320 QADVQVLVATDLAGRGIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGVAISFVTAD 379

Query: 353 DIKHIDAIEK 362
             +    IEK
Sbjct: 380 SAQQWRLIEK 389


>gi|262231852|ref|NP_001160005.1| probable ATP-dependent RNA helicase DDX4 isoform 3 [Homo sapiens]
          Length = 704

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 198/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 283 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKE 342

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 343 LQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 402

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 403 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 462

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   V    Q+SK+  L++ L    D 
Sbjct: 463 TFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQT-VLQVGQFSKREKLVEILRNIGD- 520

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 521 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 579

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 580 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHL 632


>gi|332821351|ref|XP_003310755.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 3 [Pan
           troglodytes]
          Length = 704

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 198/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 283 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKE 342

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 343 LQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 402

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 403 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPKMKKLISCPGMPSKEQRQTLMFSA 462

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   V    Q+SK+  L++ L    D 
Sbjct: 463 TFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQT-VLQVGQFSKREKLVEILRNIGD- 520

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 521 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 579

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 580 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHL 632


>gi|297294301|ref|XP_002804411.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 [Macaca
           mulatta]
          Length = 705

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 198/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 284 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKE 343

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 344 LQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 403

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 404 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 463

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   V    Q+SK+  L++ L    D 
Sbjct: 464 TFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQT-VLQVGQFSKREKLVEILRNIGD- 521

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 522 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 580

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 581 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHL 633


>gi|26342749|dbj|BAC35031.1| unnamed protein product [Mus musculus]
          Length = 681

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 211/376 (56%), Gaps = 20/376 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P+L  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 63  LEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     R++   T     LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +
Sbjct: 131 L----YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE 186

Query: 118 KLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++    ++L+CTPGR+L H +        N+++LV+DEADR+LDMGF   +  I   +P 
Sbjct: 187 RIN-NINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPK 245

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCAL 234
            RQTLLFSAT T  ++ ++   L++P+ + V+  +  ST  T+E  ++    +  +K ++
Sbjct: 246 KRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYI--ICELHQKISV 303

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL--EKQGFSVCAIHGNIDQRSRMKILSNFK 292
           L   L+S    K  I+F +  K V  L       + G S  A+HG   Q  RM++ + F 
Sbjct: 304 LFSFLRSH-LKKKSIVFFSSCKEVQYLYRVFCRLRPGISTLALHGRQQQMRRMEVYNEFV 362

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                ++ A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   
Sbjct: 363 RKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPS 422

Query: 353 DIKHIDAIEKLIEKKV 368
           + + +  +++L++KKV
Sbjct: 423 EEQGM--VQQLLQKKV 436


>gi|229048004|ref|ZP_04193580.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH676]
 gi|228723461|gb|EEL74830.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH676]
          Length = 436

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 213/378 (56%), Gaps = 14/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L  
Sbjct: 6   FTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           +   R  V++   +I  PTRELA Q+ +   K  K    +  +T   LIGG   +   +K
Sbjct: 66  INASREEVQL---VITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ- 237
           Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +  ++  K  L+ + 
Sbjct: 183 QMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPS--KHRNKIDLVHKM 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ +  +   ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 241 LLQFKPYL--AVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEVL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|163942044|ref|YP_001646928.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|229013506|ref|ZP_04170641.1| ATP-dependent RNA helicase yqfR [Bacillus mycoides DSM 2048]
 gi|229061981|ref|ZP_04199307.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH603]
 gi|229135112|ref|ZP_04263914.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST196]
 gi|229169035|ref|ZP_04296751.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH621]
 gi|163864241|gb|ABY45300.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
 gi|228614444|gb|EEK71553.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH621]
 gi|228648341|gb|EEL04374.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST196]
 gi|228717290|gb|EEL68963.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH603]
 gi|228747787|gb|EEL97655.1| ATP-dependent RNA helicase yqfR [Bacillus mycoides DSM 2048]
          Length = 436

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 125/378 (33%), Positives = 213/378 (56%), Gaps = 14/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ AV +  + +PT IQ K  P+V +   + G +QTG+GKT +++LP L  
Sbjct: 6   FTQYDFKPFLIDAVRELRFTEPTGIQKKIFPVVKKGVSIIGQSQTGSGKTHAYLLPTLNR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           ++  R  V++   +I  PTRELA Q+ +   K  K    +  +T   LIGG   +   +K
Sbjct: 66  IDASREEVQL---VITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   +++ TPGRI D      L +   + +++DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LKKQPHIVVGTPGRIKDLVEEKALFVYKADTIIVDEADLMLDMGFIQDVDKIAARMPKNL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ-Q 237
           Q L+FSAT+  +L+   + +++NP+ I +N     A  I+H  V +  ++  K  L++  
Sbjct: 183 QMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIDHYLVPS--RHRNKTELVKNM 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ +  +   I+F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 241 LLQFKPYL--AIVFTNTKKKADEVADGLAERGLKVGRIHGDLSPRDRRKMMKQVRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P   + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPPDLDFFVHRVGRTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|326942068|gb|AEA17964.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 411

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 213/378 (56%), Gaps = 14/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L  
Sbjct: 6   FTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           +   R  V++   +I  PTRELA Q+ +   K  K    +  +T   LIGG   +   +K
Sbjct: 66  INASREEVQL---VITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL-QQ 237
           Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +  ++  K  L+ + 
Sbjct: 183 QMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPS--KHRNKIDLVNKM 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ +  +   ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 241 LLQFKPYL--AVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|282862091|ref|ZP_06271154.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
 gi|282563116|gb|EFB68655.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
          Length = 545

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 120/338 (35%), Positives = 181/338 (53%), Gaps = 4/338 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G  +P PIQ  T+P  L   D+ G  +TG+GKT +F L +L      RA+   P  ++L 
Sbjct: 81  GVTEPFPIQGATLPNSLAGRDILGRGRTGSGKTLAFGLALLARTAGRRAQPHAPLAMVLV 140

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA QV D    Y  + NL VA ++GG+    Q   L RGA+VL+ TPGR+ D   R
Sbjct: 141 PTRELAQQVTDALTPYATSVNLRVATVVGGMSISRQAGSLRRGAEVLVATPGRLKDLIER 200

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
           G   ++ + + V+DEAD+M DMGF+P +  +   V    Q +LFSAT+   + ++ + FL
Sbjct: 201 GDCRLDEVTVTVLDEADQMADMGFMPQVVALLKQVEPDGQRMLFSATLDKNIDRLVKMFL 260

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
            +P    V+  +    T+EH  V   A  + K A+  ++   +  +   I+F + K+   
Sbjct: 261 TDPVVHSVDPSAGAVTTMEH-HVLHVADETDKKAVATRIAAREGRV---IMFVDTKRAAD 316

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
                L   G    A+HG   Q  R + L  FK G +  +VA+++AARG+ + D+  V N
Sbjct: 317 RFAKRLLASGVRAAALHGGRSQPQRNRTLDQFKNGQVTALVATNVAARGIHVDDLDLVVN 376

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            D P   ++Y+HR GRT RAG  G   TLV  E+ + +
Sbjct: 377 VDPPTDHKDYLHRGGRTARAGESGSVVTLVLPEEKREM 414


>gi|281211648|gb|EFA85810.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 1269

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 188/361 (52%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DL L   ++  + + GYVKP+PIQ K IP+ L   D+   A+ GTGKTASF++P L 
Sbjct: 43  EFDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALTGKDIMARAKNGTGKTASFLIPAL- 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             EK        + LIL PTRELA Q +   ++ GK  N+ V    GG   +    +L  
Sbjct: 102 --EKTDPTKDYIQVLILVPTRELALQTSQVCKELGKYMNVKVMASTGGTSLKDDIMRLYE 159

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD   +    +NN   +++DEAD++L   F P I+ +   +P  RQ L
Sbjct: 160 TVHILVATPGRVLDLAQKSVANLNNTHTMIMDEADKLLSPEFQPLIEQLIHFLPAQRQIL 219

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++   E +LQ    I +    +     ++     + +  +K   L  L  S
Sbjct: 220 LFSATFPVTVKAFKEAYLQKAYEINLMEELTLKGVTQY---YAFVEERQKIHCLNTLF-S 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   +   G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 276 KLQINQSIIFCNSVNRVELLAKKITDLGYSCFYIHAKMLQAHRNRVFHDFRNGHCRNLVS 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI DV  V NFD P  +E Y+HRIGR+GR G  G A  L+  ED   +  IE
Sbjct: 336 SDLFTRGIDIQDVNVVINFDFPKHSETYLHRIGRSGRFGHLGLAINLITYEDRFSLHKIE 395

Query: 362 K 362
           +
Sbjct: 396 Q 396


>gi|281346962|gb|EFB22546.1| hypothetical protein PANDA_001615 [Ailuropoda melanoleuca]
          Length = 710

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 205/353 (58%), Gaps = 17/353 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ+KT   V +  D+   A+TGTGKT SF +P++  
Sbjct: 112 FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 171

Query: 63  LEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ +  +   R P+ L+L PTRELA QVA +F+   +   L+VA   GG  +++Q   +
Sbjct: 172 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 229

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   G+L ++ +  +V+DE D+MLD+GF   +++I      T  
Sbjct: 230 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 289

Query: 179 ----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
               QTLLFSAT    + KV++ ++++  +++++        A T+EH  +A    +S++
Sbjct: 290 EDNPQTLLFSATCPPWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEH--LAIQCHWSQR 347

Query: 232 CALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A++  +LQ    +    IIFC  KKNV  +  +   +  + C +HG+I Q  R   L  
Sbjct: 348 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKG 406

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           F+EG+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 407 FREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 459


>gi|56461231|ref|YP_156512.1| ATP-dependent RNA helicase SrmB [Idiomarina loihiensis L2TR]
 gi|56180241|gb|AAV82963.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 409

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 126/374 (33%), Positives = 210/374 (56%), Gaps = 10/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           D+ +  L  +++  + DA   KP  +Q ++IP  L   D+   A TGTGKT +F+LP L 
Sbjct: 4   DWEEFDLDDRLIAVLRDAELNKPAKVQQQSIPAALDGRDLLISAPTGTGKTLAFLLPALQ 63

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +    R L+L PTRELA Q+ +  +++     LT  ++ GGI + +Q   LE
Sbjct: 64  HLLDFPRQQPGPARILVLAPTRELAEQIHEQAKQFEAKTGLTSVVVTGGINYGSQLSVLE 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+L+ TPGR++D     +  +  IE L+IDEADRMLDMGF   ++ +       +Q+
Sbjct: 124 KTHDILVATPGRLMDLLEAEQYNLEGIEWLIIDEADRMLDMGFAATVKEMALQARHRQQS 183

Query: 181 LLFSATM-TDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQL 238
           LL SAT+ +  + K S   L  P+ I+V  P     + ++   +A   ++ +K  LL  +
Sbjct: 184 LLLSATLNSSGVIKFSRELLTEPEYIDVQPPKRERGKILQWVHLADTDEHKRK--LLMSV 241

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ---GFSVCAIHGNIDQRSRMKILSNFKEGT 295
           LQ+    +   +F   ++ V  + + L  Q   G  +  + G++ Q  R +I++  K+ T
Sbjct: 242 LQAHPGRQ--FVFVRTRERVELIANFLRSQFGTGRKIVTLRGDMPQSDRQRIMNELKQTT 299

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
              +VA+D+AARGLD+ D+  V N+D+P +A+ Y+HRIGRT R G+ G A +LV   D  
Sbjct: 300 EITLVATDIAARGLDVDDITLVVNYDLPKQADVYLHRIGRTARGGQKGTAVSLVEAHDAL 359

Query: 356 HIDAIEKLIEKKVD 369
            +  +E+ ++ K+D
Sbjct: 360 LLGRVERYLDAKLD 373


>gi|69248136|ref|ZP_00604639.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Enterococcus faecium DO]
 gi|257878212|ref|ZP_05657865.1| helicase [Enterococcus faecium 1,230,933]
 gi|257881006|ref|ZP_05660659.1| helicase [Enterococcus faecium 1,231,502]
 gi|257884664|ref|ZP_05664317.1| helicase [Enterococcus faecium 1,231,501]
 gi|257889589|ref|ZP_05669242.1| helicase [Enterococcus faecium 1,231,410]
 gi|257892472|ref|ZP_05672125.1| helicase [Enterococcus faecium 1,231,408]
 gi|258616279|ref|ZP_05714049.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecium DO]
 gi|260559258|ref|ZP_05831444.1| helicase [Enterococcus faecium C68]
 gi|293553475|ref|ZP_06674103.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1039]
 gi|293559336|ref|ZP_06675878.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1162]
 gi|293569834|ref|ZP_06680921.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1071]
 gi|294617902|ref|ZP_06697511.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1679]
 gi|294622258|ref|ZP_06701312.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium U0317]
 gi|314939754|ref|ZP_07846976.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
 gi|314942115|ref|ZP_07848971.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
 gi|314948290|ref|ZP_07851682.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
 gi|314952378|ref|ZP_07855385.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
 gi|314992003|ref|ZP_07857456.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
 gi|314995699|ref|ZP_07860789.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
 gi|68194541|gb|EAN09035.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Enterococcus faecium DO]
 gi|257812440|gb|EEV41198.1| helicase [Enterococcus faecium 1,230,933]
 gi|257816664|gb|EEV43992.1| helicase [Enterococcus faecium 1,231,502]
 gi|257820502|gb|EEV47650.1| helicase [Enterococcus faecium 1,231,501]
 gi|257825949|gb|EEV52575.1| helicase [Enterococcus faecium 1,231,410]
 gi|257828851|gb|EEV55458.1| helicase [Enterococcus faecium 1,231,408]
 gi|260075015|gb|EEW63331.1| helicase [Enterococcus faecium C68]
 gi|291587582|gb|EFF19459.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1071]
 gi|291595847|gb|EFF27131.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1679]
 gi|291598229|gb|EFF29324.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium U0317]
 gi|291602352|gb|EFF32576.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1039]
 gi|291606700|gb|EFF36092.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1162]
 gi|313590090|gb|EFR68935.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
 gi|313593438|gb|EFR72283.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
 gi|313595495|gb|EFR74340.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
 gi|313599125|gb|EFR77970.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
 gi|313640983|gb|EFS05563.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
 gi|313645271|gb|EFS09851.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
          Length = 449

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 206/368 (55%), Gaps = 15/368 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F      P +  A+   G+ +PT +Q + IPL+ +  ++ G +QTGTGKT +F+LP+  
Sbjct: 3   NFDIFRFKPFINEALTAKGFKQPTEVQERLIPLIAKGKNIIGQSQTGTGKTHTFLLPLF- 61

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQ-NKK 118
             EK  A     + +I  P+RELAAQ+ +   +  K     + V+  +GG   + Q N+ 
Sbjct: 62  --EKINAEKEEVQVVITAPSRELAAQIYEAATQIAKFSTPEIRVSNFVGGTDKQRQLNRL 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +   V++ TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I S +P   
Sbjct: 120 HHQQPQVVVGTPGRILDMMNEQALKIHTAFAFVVDEADMTLDMGFLNEVDQIASRLPEKL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+     +++NP   E+   +  +E IE+  ++T  +   +  ++ QL
Sbjct: 180 QFLVFSATIPEKLRPFLRKYMENPIIEEIKPKAVISEDIENWLISTKGK--DENQMIYQL 237

Query: 239 LQSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L    T+ +    I+F N K++V  +   L+ QG  V  IHG+I  R R +++   +   
Sbjct: 238 L----TIGHPYLAIVFANTKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLE 293

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            Q +VA+DLAARG+DI  V HV N ++P   + +IHR+GRTGR G  G A TL +  D +
Sbjct: 294 YQYVVATDLAARGIDIEGVSHVINAEIPEDLDFFIHRVGRTGRNGLKGTAITLYSPNDEQ 353

Query: 356 HIDAIEKL 363
            IDAIEKL
Sbjct: 354 AIDAIEKL 361


>gi|254381080|ref|ZP_04996445.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194339990|gb|EDX20956.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 508

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 126/375 (33%), Positives = 193/375 (51%), Gaps = 8/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L +  +++ A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 82  FVALDMPAELLAALGTQGVSVPFPIQGATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 141

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  LIL PTRELA QVAD    Y +   L +A ++GG+P   Q   L  G
Sbjct: 142 TAGQRAEARQPLALILVPTRELAQQVADALTPYARAVKLRLATVVGGMPIGRQANALRGG 201

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A++++ TPGR+ D  +RG   +N + I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 202 AEIVVATPGRLKDLIDRGDCRLNQVAITVLDEADQMADMGFMPQVTALLDQVRPEGQRML 261

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+       T+EH  +  +   + K A   ++    
Sbjct: 262 FSATLDRNVDLLVRRYLTDPVVHSVDPSQGAVTTMEHHVL--HVHGADKHATTTEIAARD 319

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F + K  V  L   L   G    A+HG   Q  R + L+ FK G + ++VA+
Sbjct: 320 GRV---IMFLDTKHAVDRLTQDLLSSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVAT 376

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA---KEDIKHIDA 359
           ++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV    + D+  +  
Sbjct: 377 NVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRDMNRLMQ 436

Query: 360 IEKLIEKKVDWLNGD 374
              ++ +     +GD
Sbjct: 437 AAGIVPQTTQVRSGD 451


>gi|50405707|ref|XP_456492.1| DEHA2A03454p [Debaryomyces hansenii CBS767]
 gi|74659594|sp|Q6BZ77|DBP3_DEBHA RecName: Full=ATP-dependent RNA helicase DBP3
 gi|49652156|emb|CAG84444.1| DEHA2A03454p [Debaryomyces hansenii]
          Length = 527

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 206/368 (55%), Gaps = 23/368 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  + L  ++   +  + +  PTPIQ  + P +L   DV G+A+TG+GKT +F +P +
Sbjct: 119 LGFDQIDLDSRIASVI--SKFPTPTPIQAVSWPYLLSGKDVIGVAETGSGKTFAFGVPAI 176

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             IL   +  +++   L + PTRELA Q+ DN      N  L    + GG+    Q   L
Sbjct: 177 NNILTHDKKGLKV---LCISPTRELALQIYDNLVDLTANTPLKCVAVYGGVSKHEQVSSL 233

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-- 177
            R A V++ TPGR++D  N G L +++IE LV+DEADRML+ GF    Q+I S++  T  
Sbjct: 234 -RNASVVVATPGRLIDLLNDGALSLDSIEYLVLDEADRMLEKGFE---QDIKSVMQQTNH 289

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRI------EVNTPSSTAETIEHCFVATYAQYS 229
             RQTL+F+AT   E+++++  F+ +P ++      E++      + +E   +  Y +  
Sbjct: 290 ANRQTLMFTATWPKEVRELASTFMNSPVKVSIGDRNELSANKRITQIVE--VIEPYDKEK 347

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K  +LL++     +     +IF   KK    + + L +  F V A+HG++ Q+ R   L 
Sbjct: 348 KLLSLLRKYQSGSNKDDKVLIFALYKKEATRIENLLVRNSFKVSAVHGDLSQQQRTSALG 407

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G   L++A+D+AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG+ G A TL 
Sbjct: 408 AFKAGKTTLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGRAGQTGIAHTLF 467

Query: 350 AKEDIKHI 357
            + + KH+
Sbjct: 468 TEHE-KHL 474


>gi|1170509|sp|P41378|IF4A_WHEAT RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A
          Length = 414

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 199/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 43  FDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G    +    L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 103 LDYGLVECQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASG 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 160 VHVVVGTPGRVFDIVRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGV 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 220 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLA 279

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 280 ITQ-----SVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY HRIGR+GR GR G A   V +ED + +  
Sbjct: 335 ITTDLLARGIDVQQVSLVINYDLPTQPENYQHRIGRSGRFGRKGVAINFVTREDERMLFD 394

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     ++ L  +++ L
Sbjct: 395 IQKFYNVVIEELPANVADL 413


>gi|254476157|ref|ZP_05089543.1| cold-shock deAd-box protein a [Ruegeria sp. R11]
 gi|214030400|gb|EEB71235.1| cold-shock deAd-box protein a [Ruegeria sp. R11]
          Length = 724

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 120/333 (36%), Positives = 187/333 (56%), Gaps = 6/333 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL---EKGRARVRMPRTL 76
           GY + TP+Q+      L+  D+   AQTG+GKT  F L M   L    +   R  +P  L
Sbjct: 13  GYEQLTPVQLAVTAPELENSDLLVSAQTGSGKTVGFGLAMAPTLLGDAETLGRATLPLAL 72

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           ++ PTRELA QV              V   +GG+    + + LERGA +++ TPGR+ DH
Sbjct: 73  VIAPTRELALQVKRELGWLYAEAGAHVVSTVGGMDMRDERRALERGAHIVVATPGRLRDH 132

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
            NRG + ++ +  +V+DEAD MLD+GF   ++ I    P  R+TL+FSAT+   + +++E
Sbjct: 133 INRGSIDLSQVRAVVLDEADEMLDLGFREDLEFILGESPEDRRTLMFSATVPAGIARLAE 192

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
            +L++ +RI+    +S    IE+  +A  AQ   + A++  L   +    N I+FCN + 
Sbjct: 193 TYLKDHQRIKTLAEASQHADIEYQMLAV-AQRDTEHAIINVLRYHE--APNAIVFCNTRA 249

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
            V  L   L  +GFSV A+ G + Q  R   L + ++G  ++ VA+D+AARG+D+P +  
Sbjct: 250 VVNRLTTRLSNRGFSVVALSGELTQSERSNALQSLRDGRARVCVATDVAARGIDLPKLDL 309

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           V + D+P+  E  +HR GRTGRAGR G +  +V
Sbjct: 310 VIHADLPSSHETLLHRSGRTGRAGRQGVSALIV 342


>gi|328880510|emb|CCA53749.1| ATP-dependent RNA helicase [Streptomyces venezuelae ATCC 10712]
          Length = 472

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 124/355 (34%), Positives = 188/355 (52%), Gaps = 5/355 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L L  +V+  +   G   P PIQ  T+P  L   DV G  +TG+GKT +F LP+L  
Sbjct: 30  FAELDLPAEVLDVLARLGLDTPFPIQSATLPDALAGRDVLGRGRTGSGKTLAFGLPLLVR 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D  E + +   L +A ++GG+    Q   L  G
Sbjct: 90  AAGRRAESRRPHALVLVPTRELAQQVTDALEPFARALKLRLATVVGGMSIGRQATALRDG 149

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+VLI TPGR++D   R    ++ +   V+DEAD+M D+GF+P +  +  LV    Q +L
Sbjct: 150 AEVLIATPGRLMDLVERKDCRLDRVAATVLDEADQMADLGFMPQVTELLDLVRPEGQRML 209

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  + E +L +P    V+  S+T  T++H  +  +   + K A   ++    
Sbjct: 210 FSATLDRNVDLLVERYLADPVVHSVDPSSATVSTMDHHVL--HVHGADKFATATEIAARD 267

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F   K  V      L   G    A+HG   Q  R + L  F+ G + ++VA+
Sbjct: 268 GRV---IMFLATKAAVDRFTKHLLGSGVRAAALHGGKSQPLRTRTLDRFRSGEVPVLVAT 324

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV  E+ + +
Sbjct: 325 NVAARGIHVDELDLVVNVDPPADHKDYLHRGGRTARAGESGLVVTLVTPEERRDV 379


>gi|227551392|ref|ZP_03981441.1| ATP-dependent RNA helicase [Enterococcus faecium TX1330]
 gi|257895994|ref|ZP_05675647.1| helicase [Enterococcus faecium Com12]
 gi|227179511|gb|EEI60483.1| ATP-dependent RNA helicase [Enterococcus faecium TX1330]
 gi|257832559|gb|EEV58980.1| helicase [Enterococcus faecium Com12]
          Length = 449

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 207/368 (56%), Gaps = 15/368 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F      P +  A+   G+ +PT +Q + IPL+ +  ++ G +QTGTGKT +F+LP+  
Sbjct: 3   NFDIFRFKPFINEALAAKGFKQPTEVQERLIPLIAKGKNIIGQSQTGTGKTHTFLLPLFE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKL 119
            +   +  V++   +I  P+RELAAQ+ +   +  K     + V+  +GG   + Q  +L
Sbjct: 63  KINADKEEVQV---VITAPSRELAAQIYEAATQIAKFSTPEIRVSNFVGGTDKQRQINRL 119

Query: 120 E-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +   V++ TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I S +P   
Sbjct: 120 HHQQPQVVVGTPGRILDMMNEQALKIHTAFAFVVDEADMTLDMGFLNEVDQIASRLPEKL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+     +++NP   E+   +  +E IE+  ++T  +   +  ++ QL
Sbjct: 180 QFLVFSATIPEKLRPFLRKYMENPIIEEIKPKAVISEDIENWLISTKGK--DENQMIYQL 237

Query: 239 LQSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L    T+ +    I+F N K++V  +   L+ QG  V  IHG+I  R R +++   +   
Sbjct: 238 L----TIGHPYLAIVFANTKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLE 293

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            Q +VA+DLAARG+DI  V HV N ++P   + +IHR+GRTGR G  G A TL +  D +
Sbjct: 294 YQYVVATDLAARGIDIEGVSHVINAEIPEDLDFFIHRVGRTGRNGLKGTAITLYSPNDEQ 353

Query: 356 HIDAIEKL 363
            IDAIEKL
Sbjct: 354 AIDAIEKL 361


>gi|16081434|ref|NP_393777.1| DEAD box protein [Thermoplasma acidophilum DSM 1728]
 gi|10639440|emb|CAC11442.1| probable DEAD box protein [Thermoplasma acidophilum]
          Length = 388

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 120/330 (36%), Positives = 196/330 (59%), Gaps = 8/330 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+V  T +Q +TI   L   D+   ++TG+GKTA++++P++  +  GR     P  LI+ 
Sbjct: 41  GFVDMTAVQERTIEPALAGRDLIIRSKTGSGKTAAYLVPIINNISLGRK----PSALIVL 96

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA QV    EK G +  +   ++ GG     Q + L+RG D+++ TPGRILD   R
Sbjct: 97  PTRELALQVHGVAEKLGHSSRIRSTVIYGGASMSRQIELLDRGTDIIVGTPGRILDLHER 156

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
           G L ++ ++  V+DEAD MLDMGFI  I+ + SL+   +QT + SATM +E+  ++ +F+
Sbjct: 157 GFLNLSAVKYFVLDEADVMLDMGFIDDIKRMMSLLREDKQTFILSATMPEEIIDMANDFM 216

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
           ++P+ I V +   T + I H +  +  + ++K  +LQ  L++    K  IIF   K    
Sbjct: 217 RDPETIIVGSDEVTVKEIYHYYAIS--KRNRKLHVLQTYLKTYGPQKT-IIFSRTKVGTK 273

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            +C  L   G++   I+G++ Q  R + +  F+      +VA+++AARG+DI DV  + N
Sbjct: 274 MVCDFLLNMGYNAVMINGDMSQSQRERAMYLFRNRA-DYLVATNVAARGIDIRDVTDIIN 332

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           FD+P+  + Y+HR+GRT R G  G+AF++V
Sbjct: 333 FDLPDDPKVYVHRVGRTARLGSEGRAFSIV 362


>gi|302508367|ref|XP_003016144.1| ATP-dependent RNA helicase, putative [Arthroderma benhamiae CBS
           112371]
 gi|291179713|gb|EFE35499.1| ATP-dependent RNA helicase, putative [Arthroderma benhamiae CBS
           112371]
          Length = 528

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 139/382 (36%), Positives = 210/382 (54%), Gaps = 17/382 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL+P +V ++      +PT IQ   IP +++  D  G ++TG+GKT +F  P   I
Sbjct: 101 FSSLGLAPWLVSSLKAMEIKRPTAIQKSCIPEIIKGRDCIGGSRTGSGKTVAFAGP---I 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K          +IL PTRELA Q+ +  +      +L   L+ GG     Q   L + 
Sbjct: 158 LHKWSEDPFGIYAVILTPTRELALQIFEQVKAISAPQSLKPLLITGGSDMRPQAIGLSQR 217

Query: 123 ADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSLVP 175
             ++I TPGR+ DH         + +  + ++V+DEADR+L  G    +P ++   S +P
Sbjct: 218 PHIVIATPGRLADHIKSSGEDTIIGLKRVRMVVLDEADRLLTSGPGSMLPDVETCLSALP 277

Query: 176 FT--RQTLLFSATMTDELQKV-SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY--SK 230
            +  RQTLLF+AT+T E++ + S    +N   I V   S+   TI      TY Q   + 
Sbjct: 278 PSSDRQTLLFTATVTPEVRALKSMPRAKNKPPIFVTEISTENTTIPPTLKQTYLQVPLNH 337

Query: 231 KCALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A L  LL ++ ++ K+ IIFCN+ K    L   L +    V ++H  + Q  R+  LS
Sbjct: 338 REAFLHVLLSTEGNSSKSTIIFCNRTKTADLLERILRRLSHRVTSLHSLLPQSERVANLS 397

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+    +L+VA+D+AARGLDIP VG V N+DVP   ++YIHR+GRT RAGR G+A TLV
Sbjct: 398 RFRASAARLLVATDVAARGLDIPSVGLVINYDVPRNPDDYIHRVGRTARAGREGEAITLV 457

Query: 350 AKEDIKHIDAIEKLIEKK-VDW 370
            + D++ + AIE  + K+ V W
Sbjct: 458 GQRDVQLVLAIEARVGKQMVAW 479


>gi|257887499|ref|ZP_05667152.1| helicase [Enterococcus faecium 1,141,733]
 gi|293570504|ref|ZP_06681559.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E980]
 gi|257823553|gb|EEV50485.1| helicase [Enterococcus faecium 1,141,733]
 gi|291609450|gb|EFF38717.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E980]
          Length = 449

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 207/368 (56%), Gaps = 15/368 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F      P +  A+   G+ +PT +Q + IPL+ +  ++ G +QTGTGKT +F+LP+  
Sbjct: 3   NFDIFRFKPFINEALAAKGFKQPTEVQERLIPLIAKGKNIIGQSQTGTGKTHTFLLPLFE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQ-NKK 118
            +   +  V++   +I  P+RELAAQ+ +   +  K     + V+  +GG   + Q N+ 
Sbjct: 63  KINADKEEVQV---VITAPSRELAAQIYEAATQIAKFSTPEIRVSNFVGGTDKQRQLNRL 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +   V++ TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I S +P   
Sbjct: 120 HHQQPQVVVGTPGRILDMMNEQALKIHTAFAFVVDEADMTLDMGFLNEVDQIASRLPEKL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+     +++NP   E+   +  +E IE+  ++T  +   +  ++ QL
Sbjct: 180 QFLVFSATIPEKLRPFLRKYMENPIIEEIKPKAVISEDIENWLISTKGK--DENQMIYQL 237

Query: 239 LQSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L    T+ +    I+F N K++V  +   L+ QG  V  IHG+I  R R +++   +   
Sbjct: 238 L----TIGHPYLAIVFANTKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLE 293

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            Q +VA+DLAARG+DI  V HV N ++P   + +IHR+GRTGR G  G A TL +  D +
Sbjct: 294 YQYVVATDLAARGIDIEGVSHVINAEIPEDLDFFIHRVGRTGRNGLKGTAITLYSPNDEQ 353

Query: 356 HIDAIEKL 363
            IDAIEKL
Sbjct: 354 AIDAIEKL 361


>gi|301785417|ref|XP_002928121.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 1
           [Ailuropoda melanoleuca]
          Length = 729

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 124/353 (35%), Positives = 198/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 305 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKE 364

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 365 LQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 424

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  ++ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 425 PGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 484

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   +    QYSK+  L++ L    D 
Sbjct: 485 TFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQV-GQYSKREKLVEILRNIGD- 542

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 543 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 601

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 602 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNHL 654


>gi|329941644|ref|ZP_08290909.1| DEAD-box RNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329299361|gb|EGG43261.1| DEAD-box RNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 480

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 121/347 (34%), Positives = 180/347 (51%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL P ++  + D G   P PIQ   +P  L   DV G  +TG+GKT +F L ML  
Sbjct: 36  FAELGLPPALLRVLGDHGVTVPFPIQAAALPDALAGRDVLGRGRTGSGKTLAFGLGMLAR 95

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA+ + P  L+L PTRELA QV +    Y +   L +A ++GG+    Q   L  G
Sbjct: 96  TAGRRAQPKEPLALVLVPTRELAQQVGEALTPYAEALGLRLATVVGGVSLGRQAAALRDG 155

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A++++ TPGR+ D   R    +  + I V+DEADRM D+GF+P +  +   V    Q +L
Sbjct: 156 AEIVVATPGRLHDLVERNGCRLGRVRIAVVDEADRMSDLGFLPQVTGVLDQVRGDGQRML 215

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  ++  +   +L+ P    V+  S     I+H     +     + A+  ++    
Sbjct: 216 FSATLDRDVDHLVRAYLREPAVHSVDPSSGAVAAIDHHVFLVHG--PDRYAVTTEIAARD 273

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   ++F + K  V  L   L   G +  A+H    Q  R   L+ FK+G I  +VA+
Sbjct: 274 GRV---LLFLDTKHGVDQLTRHLRANGVAAAALHSGKSQPQRTGTLARFKDGGITALVAT 330

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARGL I D+  V N D     ++Y+HR GRT RAGR G   TLV
Sbjct: 331 NVAARGLHIDDLDLVINVDPATDPKDYLHRAGRTARAGRSGTVVTLV 377


>gi|257898623|ref|ZP_05678276.1| helicase [Enterococcus faecium Com15]
 gi|257836535|gb|EEV61609.1| helicase [Enterococcus faecium Com15]
          Length = 449

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 207/368 (56%), Gaps = 15/368 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F      P +  A+   G+ +PT +Q + IPL+ +  ++ G +QTGTGKT +F+LP+  
Sbjct: 3   NFDIFRFKPFINEALAAKGFKQPTEVQERLIPLIAKGKNIIGQSQTGTGKTHTFLLPLFE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQ-NKK 118
            +   +  V++   +I  P+RELAAQ+ +   +  K     + V+  +GG   + Q N+ 
Sbjct: 63  KINADKEEVQV---VITAPSRELAAQIYEAATQIAKFSTPEIRVSNFVGGTDKQRQLNRL 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +   V++ TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I S +P   
Sbjct: 120 HHQQPQVVVGTPGRILDMMNEQALKIHTAFAFVVDEADMTLDMGFLNEVDQIASRLPEKL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+     +++NP   E+   +  +E IE+  ++T  +   +  ++ QL
Sbjct: 180 QFLVFSATIPEKLRPFLRKYMENPIIEEIKPKAVISEDIENWLISTKGK--DENQMIYQL 237

Query: 239 LQSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L    T+ +    I+F N K++V  +   L+ QG  V  IHG+I  R R +++   +   
Sbjct: 238 L----TIGHPYLAIVFANTKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLE 293

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            Q +VA+DLAARG+DI  V HV N ++P   + +IHR+GRTGR G  G A TL +  D +
Sbjct: 294 YQYVVATDLAARGIDIEGVSHVINAEIPEDLDFFIHRVGRTGRNGLKGTAITLYSPNDEQ 353

Query: 356 HIDAIEKL 363
            IDAIEKL
Sbjct: 354 AIDAIEKL 361


>gi|194068383|dbj|BAG55012.1| vasa [Saccostrea kegaki]
          Length = 422

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 132/382 (34%), Positives = 205/382 (53%), Gaps = 21/382 (5%)

Query: 35  VLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR------ARVRMPRTLILEPTRELAAQV 88
           V+   D+   AQTG+GKTA+F+LP+LT + K        + V+ P+ L++ PTRELA Q+
Sbjct: 8   VMAGRDLMACAQTGSGKTAAFILPVLTGMMKNGISGSSFSEVQEPQALVVAPTRELAVQI 67

Query: 89  ADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIE 148
             +  K+     L   +L GG     Q +++E+G  +L+ TPGR++D   +GK+ +  ++
Sbjct: 68  FMDARKFAYGTMLRPVVLYGGTSVGYQLRQVEQGTHILVGTPGRLIDIIGKGKISLAKLK 127

Query: 149 ILVIDEADRMLDMGFIPYIQNITSLV---PFT-RQTLLFSATMTDELQKVSENFLQNPKR 204
            L++DEADRMLDMGF P I+ I   +   P T RQTL+FSAT   E+Q+++ +FL +   
Sbjct: 128 YLILDEADRMLDMGFGPDIRKIVEELGTPPKTERQTLMFSATFPKEIQEMAGDFLNDYLF 187

Query: 205 IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHS 264
           + V         +         Q  +K + L  +L    T K  ++F  QK+N   L   
Sbjct: 188 LTVGRVGGACTDVTQTVFEVDRQ--EKRSRLCDILTETGTEKT-LVFVEQKRNADFLASY 244

Query: 265 LEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPN 324
           L + GF   +IHG+  Q  R + L +FK G   +++A+ +AARGLDIP V HV N+D+P+
Sbjct: 245 LSQNGFPTTSIHGDRLQAEREEALRDFKTGKAPVLIATSVAARGLDIPLVKHVINYDLPS 304

Query: 325 RAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH-----IDAIEKLIEKKVDWLNGDLSSLN 379
             + Y+HRIGRTGR G  GKA +  + +         +  +   +++  DWL     +  
Sbjct: 305 SIDEYVHRIGRTGRCGNLGKAMSFYSNDTDGALAKPLVRILSDAMQEVPDWLEEYSKTSM 364

Query: 380 PPLEKIDIAQH---NHARKNNP 398
           P     D+         RKN P
Sbjct: 365 PGSGYADVGAKFGGRDIRKNQP 386


>gi|313227809|emb|CBY22958.1| unnamed protein product [Oikopleura dioica]
          Length = 862

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 130/387 (33%), Positives = 207/387 (53%), Gaps = 17/387 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF    L+  ++  +    +  PTP+Q  +IP  +   D+   AQTG+GKTA+++LP+L 
Sbjct: 336 DFRKSKLNDTLLARLKHLDFQTPTPVQKASIPATMLGRDIMACAQTGSGKTAAYLLPILN 395

Query: 62  -ILEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            ++E+G     A  + P+ LI+ PTRELA Q+ D    + K+  +    L GG      +
Sbjct: 396 DLMEQGIKAEPAHRQFPQVLIISPTRELAIQIYDQCRLFAKDSRIVAQCLYGGTDVRFIH 455

Query: 117 KKL-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV- 174
           +K+ E G +VLI TPGRI D   R  L +N ++  V+DEADRMLDMGF P ++ + +   
Sbjct: 456 QKISESGCNVLIGTPGRINDFLEREYLGLNKLQYFVLDEADRMLDMGFGPIMKQLATGYR 515

Query: 175 ---PFTRQTLLFSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYSK 230
              P  R+TL+FSAT    +Q+ + +F+ +    I+V         +    +   ++ SK
Sbjct: 516 MPRPGKRKTLMFSATFPQTIQQFAADFMDSEYLFIKVGVVGGACADVSQEVLIIGSEESK 575

Query: 231 KCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K   L++L++   +T +  ++F   K     +   L +      +IHG   Q  R   L+
Sbjct: 576 KSGKLEELIKEVAETRQRTLVFVETKIKADFIACMLSQTNVPTTSIHGGRLQPERESALA 635

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G   ++VA+ +AARGLDIP+V HV N+++P   E Y+HRIGRTGR G  GK+ +  
Sbjct: 636 DFRSGVCPILVATSVAARGLDIPEVEHVINYELPREIEEYVHRIGRTGRCGNLGKSTSFY 695

Query: 350 AKEDIKHIDA-----IEKLIEKKVDWL 371
             E   H+ A     +    +   DWL
Sbjct: 696 DPEKDCHLAAHLVKVLSDATQPVPDWL 722


>gi|326511343|dbj|BAJ87685.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 410

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 210/367 (57%), Gaps = 5/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L P+++  +   G+ +P+ IQ + I  ++   DV   AQ+GTGKTA+F +   +
Sbjct: 38  NFDNMELKPELLRGIYAYGFERPSAIQERAIMPIITGRDVIAQAQSGTGKTATFTI---S 94

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    +R P+ LIL PTRELA Q+       G   N+     +GG   +    KL+ 
Sbjct: 95  ILQRIDMALREPQALILAPTRELAQQIQKVVIALGDYMNVDCHACVGGTSIKEDIAKLQA 154

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L  ++I++  +DEAD ML  GF   + +I  L+P   Q +
Sbjct: 155 GPHVIVGTPGRVFDMINRRFLKTDHIKVFALDEADEMLSKGFAENMYDIFQLLPAETQVV 214

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM +++ +V++ F+++P RI V     T E I   ++A   +  K   L    L  
Sbjct: 215 LLSATMPNDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYIAVEKEDWKLDTLCD--LYE 272

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFC+ ++ V  L   L  + F+V A+HG+++ ++R  ++  F+ G+ ++++A
Sbjct: 273 TVTITQAVIFCSTRRKVDWLTEKLHSREFTVSAMHGDMEMQAREVVMKEFRSGSSRVLIA 332

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENY+HRIGR GR GR G A   V  ED+K +  IE
Sbjct: 333 TDLLARGIDVQQVSLVINYDLPSSKENYVHRIGRGGRFGRKGVAINFVTTEDVKMLREIE 392

Query: 362 KLIEKKV 368
           +    ++
Sbjct: 393 QFYNTEI 399


>gi|146197837|dbj|BAF57631.1| DEAD box polypeptide 48 protein [Dugesia japonica]
          Length = 376

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 126/373 (33%), Positives = 195/373 (52%), Gaps = 5/373 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           + L   ++  +   G+ KP+ IQ +TI  +++  DV   AQ+GTGKT+   +  L + + 
Sbjct: 7   MSLKEDLLRGIYAYGFEKPSAIQARTIKQIVKGRDVIAQAQSGTGKTSLIAISSLQLTD- 65

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
               +R  + LIL PTRELA Q        G   N+     IGG       KKL+ G  +
Sbjct: 66  --INLRETQVLILSPTRELAQQTQKVILALGDYMNVQCHACIGGASMAQDMKKLDYGQHI 123

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           +  TPGR+ D   R  L    I  LV+DEAD MLD GF   I  I   +P   Q +L SA
Sbjct: 124 VSGTPGRVFDMMQRRNLRTGKISTLVLDEADEMLDKGFKEQIYQIYRYLPPGTQVILISA 183

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           T+  ++ +++  F+ NP RI V     T E I+  FV+   +  K   L    +    T+
Sbjct: 184 TLPHDILEMTSKFMTNPIRILVKRDELTLEGIKQYFVSVEREEWKFDTLCD--IYDTVTV 241

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              +IFCN K+ V  L   + +  F+V +IHG++ Q  R +I   F+    ++++ +D+ 
Sbjct: 242 TQVVIFCNTKRKVEWLTDKMRENNFTVSSIHGDMPQGERDEITRQFRALETRVLITTDVW 301

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +D++ +  IE+   
Sbjct: 302 ARGIDVQHVSLVINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKSDDVRILRDIEQFYA 361

Query: 366 KKVDWLNGDLSSL 378
            ++D +  +++ L
Sbjct: 362 TQIDEMPMNMAEL 374


>gi|15222526|ref|NP_174479.1| STRS1 (STRESS RESPONSE SUPPRESSOR 1); ATP binding / ATP-dependent
           helicase/ helicase/ nucleic acid binding [Arabidopsis
           thaliana]
 gi|75333350|sp|Q9C551|RH5_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 5
 gi|12321302|gb|AAG50723.1|AC079041_16 p68 RNA helicase, putative [Arabidopsis thaliana]
 gi|12321459|gb|AAG50784.1|AC074309_1 RNA helicase, putative [Arabidopsis thaliana]
 gi|19347812|gb|AAL86356.1| putative p68 RNA helicase [Arabidopsis thaliana]
 gi|21436171|gb|AAM51373.1| putative p68 RNA helicase [Arabidopsis thaliana]
 gi|332193302|gb|AEE31423.1| DEAD-box ATP-dependent RNA helicase 5 [Arabidopsis thaliana]
          Length = 537

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 125/336 (37%), Positives = 192/336 (57%), Gaps = 8/336 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILEK-----GRARVRMPR 74
           + KP+PIQ  T P +L   D+ GIA+TG+GKT +F +P ++ +L+K     G ++   P 
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPT 193

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTRELA Q++D   + G+   L    + GG     Q   +  G D++I TPGR+ 
Sbjct: 194 CLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLR 253

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D      L ++++  +V+DEADRMLDMGF   ++ I S     RQ ++FSAT   ++ K+
Sbjct: 254 DLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKL 313

Query: 195 SENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI-IFC 252
           ++ F+  NP ++ + +    A       +    + ++   L+  L +   + KN + +F 
Sbjct: 314 AQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFA 373

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             K     L   L+++G+   +IHGN  Q  R + LS FKEG+  L+VA+D+AARGLDIP
Sbjct: 374 LYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIP 433

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           DV  V N+  P   E+Y+HRIGRTGRAG+ G A T 
Sbjct: 434 DVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTF 469


>gi|159488923|ref|XP_001702450.1| RNA helicase [Chlamydomonas reinhardtii]
 gi|158271118|gb|EDO96945.1| RNA helicase [Chlamydomonas reinhardtii]
          Length = 737

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 131/351 (37%), Positives = 189/351 (53%), Gaps = 17/351 (4%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML--TILEK------GRARVRMPRTLI 77
           PIQ  T+   ++  DV G A+TG GKT +F +P++   I E+      GR   R+P  ++
Sbjct: 129 PIQAMTLEPAMEGLDVVGRARTGCGKTLAFTVPVVERIIAEQKSGSGIGRGAGRLPVCIV 188

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           L PTRELA QV + F   GK  NL    + GG P++ Q + L RG DV++ TPGR+ D  
Sbjct: 189 LAPTRELAKQVQEVFANTGKAANLYTMCVYGGTPYDGQEQALSRGVDVVVGTPGRVKDLL 248

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR---QTLLFSATMTDELQKV 194
            RG L ++NI   V+DE D+ML MGFI  ++ I       R   QTLLFSAT+   +Q +
Sbjct: 249 ERGTLKLSNIRFRVLDEVDQMLAMGFIEDVETILKQGENNRDQIQTLLFSATLPKWVQGL 308

Query: 195 SENFLQNPKR---IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
           ++ FL+   +   +  +     A T++H  +     Y ++  LL+ L+ S       IIF
Sbjct: 309 TQRFLRPGHKFLDLVGDDRMQAAVTVKHLMLP--CSYPQRAGLLKDLITSYGAGGRTIIF 366

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
            + KK    L   L        A+HG++ Q  R + L  F++G   +++A+D+AARGLD+
Sbjct: 367 TDSKKEAAELSVVL-GDSLGAQALHGDLAQSMREQTLDGFRKGRFAILIATDVAARGLDV 425

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
             +  V   D P   E YIHR GRTGRAG  G   TLV K+    +  IEK
Sbjct: 426 TGIELVLMVDPPADWETYIHRSGRTGRAGSSGVCVTLVTKKMEYMVPIIEK 476


>gi|154420635|ref|XP_001583332.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121917573|gb|EAY22346.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 449

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 121/359 (33%), Positives = 202/359 (56%), Gaps = 5/359 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL L+  ++ A+ +  +  PT +Q +TIP +L   D+C  A TG+GK+ +F++P++
Sbjct: 7   ISFLDLKLAKPIIRALNENNFTNPTKVQAETIPKILSGQDICATAITGSGKSMAFLIPIV 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   R  +  P+ LI+ PTRELA Q+    +    +  +T  L+IGG+  E Q + L 
Sbjct: 67  QKLLTFRG-LPGPKALIMSPTRELAQQLKAVCDMLAAHCAITSTLVIGGVSDEEQRELLT 125

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D++I TPGR +D  FN   L + +++  V+DEADR+L  GF   +  I S +P   Q
Sbjct: 126 PAPDIIIGTPGRFIDSIFNAKVLKLEHLQFFVLDEADRLLGKGFESQLNTIVSQLPEKHQ 185

Query: 180 TLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           TLLF+AT+ D++ K++    + + ++I +N        I   F+ T  +  ++   L  L
Sbjct: 186 TLLFTATLNDQVAKLATKIQKKSSEKISINPYMELNPNITQMFIKTKKE-ERRLPYLVAL 244

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            ++    K  ++F   K    ++    +  G +   +H ++ Q +R + +  F+E  +Q 
Sbjct: 245 CRNMCKDKT-LVFFPTKALAHHVFLLFKNLGIASAELHADLSQTARNEAIEQFRESKVQY 303

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ASDLAARG+DIPD+ +V NF +PN  E YIHR GRTGRAG+ G A ++    + K +
Sbjct: 304 LLASDLAARGIDIPDIEYVINFTIPNELERYIHRTGRTGRAGKKGTAISMYVTPEEKRV 362


>gi|13518015|ref|NP_077726.1| probable ATP-dependent RNA helicase DDX4 isoform 1 [Homo sapiens]
 gi|20138033|sp|Q9NQI0|DDX4_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog
 gi|8102021|gb|AAF72705.1| VASA protein [Homo sapiens]
 gi|56789238|gb|AAH88362.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Homo sapiens]
 gi|119575324|gb|EAW54929.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Homo sapiens]
 gi|158258266|dbj|BAF85106.1| unnamed protein product [Homo sapiens]
          Length = 724

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 198/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 303 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKE 362

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 363 LQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 422

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 423 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 482

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   V    Q+SK+  L++ L    D 
Sbjct: 483 TFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQT-VLQVGQFSKREKLVEILRNIGD- 540

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 541 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 599

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 600 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHL 652


>gi|229163230|ref|ZP_04291185.1| ATP-dependent RNA helicase yqfR [Bacillus cereus R309803]
 gi|228620293|gb|EEK77164.1| ATP-dependent RNA helicase yqfR [Bacillus cereus R309803]
          Length = 436

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 213/378 (56%), Gaps = 14/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L  
Sbjct: 6   FTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           +   R  V++   +I  PTRELA Q+ +   K  K    +  +T   LIGG   +   +K
Sbjct: 66  INPSREEVQL---VITAPTRELAQQIYEEIVKLTKFCAEDQLITARCLIGGTDKQRSIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ- 237
           Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +  ++  K  L+ + 
Sbjct: 183 QMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPS--KHRNKIDLVNKM 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ +  +   ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 241 LLQFKPYL--AVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|260905466|ref|ZP_05913788.1| putative DEAD-box RNA helicase [Brevibacterium linens BL2]
          Length = 598

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 126/356 (35%), Positives = 189/356 (53%), Gaps = 13/356 (3%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG+ P+V+   L A G +   PIQ  T+P  L   DV G  +TG+GKT +F +PM+T
Sbjct: 34  FTDLGV-PEVLTESLRAEGKINAFPIQQDTLPDTLAGRDVLGRGKTGSGKTLAFSIPMVT 92

Query: 62  IL----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L      G  R R PR LIL PTRELA Q+ +  +   + Y +T   + GG+  + Q  
Sbjct: 93  RLAAAKSAGSKRSRPPRGLILAPTRELATQITNVVDPLAQAYGMTTTTIFGGVKQKRQEV 152

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+++  PGR+ D   +G + +++IE+ V+DEAD M D+GF+P +  I    P  
Sbjct: 153 ALNAGVDIVVACPGRLEDLLQQGLVSLDHIEVTVLDEADHMADLGFLPSVTRILGKTPEH 212

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQ 236
            Q + FSAT+ +++ K+   FL N     V+ PSS  ++   H F         K  L+ 
Sbjct: 213 GQRMFFSATLDNDVNKLVRRFLHNEVLHSVDDPSSHVSDMTHHVF---EVPDDNKNELVH 269

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L          I+F   K         L  QG     +HGN+ Q +R + L+ F EG +
Sbjct: 270 RLASGTGRR---IMFTRTKHRAKRFARQLTAQGIPAVDLHGNLSQGARDRNLAAFSEGDV 326

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +++VA+D+AARG+ +  V  V + D P   + Y+HR GRT RAG  G+  T++  E
Sbjct: 327 KVLVATDVAARGVHVDSVELVVHVDPPTEHKAYLHRSGRTARAGSSGEVVTIMLPE 382


>gi|300708304|ref|XP_002996334.1| hypothetical protein NCER_100594 [Nosema ceranae BRL01]
 gi|239605627|gb|EEQ82663.1| hypothetical protein NCER_100594 [Nosema ceranae BRL01]
          Length = 403

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 133/372 (35%), Positives = 209/372 (56%), Gaps = 12/372 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F D  +  ++V  + D   +  TPIQ KT+PL+L  HD+ GI+ TGTGKT SF++P+L
Sbjct: 1   MNFEDQKIDKQIVKILKDNNIIYMTPIQHKTVPLILNGHDILGISSTGTGKTFSFLVPIL 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L   ++       LI+ PTRELA Q+ D   K  K+  +    LIGG   E Q  +L
Sbjct: 61  HNLLNTNKS----FYCLIITPTRELALQI-DKTVKLFKSLGVKSLALIGGEKIEDQLNQL 115

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    ++I TPGR+  H     L +N   +LV+DEAD+  +  FI  +  I   +   RQ
Sbjct: 116 KTHPHIVIGTPGRL--HKIGKNLKINRFRVLVLDEADKYFEDDFIEEMAFILENLRKKRQ 173

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLF+AT+T+ L++ S   L+N K I+++T     +  E  F    A+  K+C L   L 
Sbjct: 174 TLLFTATITNNLKQKSLEILKNFKEIDLSTNVKVEKLDEFYFFV--ARKYKECFLYSLLK 231

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             QD     IIF N K   + L   ++  G  V  ++G+ DQ++R++I+  F +    ++
Sbjct: 232 NKQDL--KIIIFVNMKITTLILSSLMKSFGIDVETLNGDQDQQARIEIIDGFIKNKYNVL 289

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ +RGLD+ DV  V N+D+P   ++Y+HR+GRT RAG+ G A TLV + D+     
Sbjct: 290 ITTDVGSRGLDVCDVDFVINYDLPQNNKDYVHRVGRTARAGKKGVALTLVTQYDVSIFQK 349

Query: 360 IEKLIEKKVDWL 371
           IE  + +K++  
Sbjct: 350 IEYFLNRKLNLF 361


>gi|296824810|ref|XP_002850715.1| ATP-dependent RNA helicase DBP8 [Arthroderma otae CBS 113480]
 gi|238838269|gb|EEQ27931.1| ATP-dependent RNA helicase DBP8 [Arthroderma otae CBS 113480]
          Length = 527

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 139/382 (36%), Positives = 210/382 (54%), Gaps = 17/382 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL+P +V ++      +PT IQ   IP +++  D  G ++TG+GKT +F  P   I
Sbjct: 100 FASLGLAPWLVSSLKAMEIKRPTAIQKCCIPEIIKGRDCIGGSRTGSGKTVAFAAP---I 156

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K          ++L PTRELA Q+ +  +      +L   L+ GG     Q   L + 
Sbjct: 157 LHKWSEDPFGIFAVVLTPTRELALQIFEQIKAISAPQSLKPLLITGGSDMRPQAIGLSQR 216

Query: 123 ADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSLVP 175
             ++I TPGR+ DH         + +  + ++V+DEADR+L  G    +P ++   S +P
Sbjct: 217 PHIVIATPGRLADHIKSSGEDTIVGLKRVRMVVLDEADRLLSSGPGSMLPDVETCLSALP 276

Query: 176 FT--RQTLLFSATMTDELQKV-SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY--SK 230
            +  RQTLLF+AT+T E++ + S    +N   I V   S+   TI      +Y Q   + 
Sbjct: 277 PSTNRQTLLFTATVTPEVRALKSMPRAKNRPPIFVTEISTENTTIPPTLKQSYLQVPLNH 336

Query: 231 KCALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A L  LL ++ ++ K+ IIFCN+ K    L   L +    V ++H  + Q  R+  LS
Sbjct: 337 REAFLHVLLSTEGNSSKSTIIFCNRTKTADLLERMLRRLSHRVTSLHSLLPQSERVANLS 396

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+    +L+VA+D+AARGLDIP VG V NFDVP   ++YIHR+GRT RAGR G+A TLV
Sbjct: 397 RFRASAARLLVATDVAARGLDIPSVGLVINFDVPRNPDDYIHRVGRTARAGREGEAITLV 456

Query: 350 AKEDIKHIDAIEKLIEKK-VDW 370
            + D++ + AIE  + K+ V W
Sbjct: 457 GQRDVQLVLAIEARVGKQMVAW 478


>gi|332821345|ref|XP_517757.3| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 4 [Pan
           troglodytes]
          Length = 724

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 198/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 303 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKE 362

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 363 LQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 422

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 423 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPKMKKLISCPGMPSKEQRQTLMFSA 482

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   V    Q+SK+  L++ L    D 
Sbjct: 483 TFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQT-VLQVGQFSKREKLVEILRNIGD- 540

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 541 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 599

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 600 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHL 652


>gi|170094876|ref|XP_001878659.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647113|gb|EDR11358.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 617

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 130/359 (36%), Positives = 193/359 (53%), Gaps = 16/359 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--ML 60
           F D+ +   ++  +     V PTPIQ++ IP      D+ GIA TG+GKT +F LP  ML
Sbjct: 183 FVDMKIPEAILEYLKSKRIVTPTPIQLQGIPTAFSGRDIIGIAFTGSGKTLAFCLPLIML 242

Query: 61  TILEKGR---ARVRMPRTLILEPTRELAAQVADN-------FEKYGKNYNLTVALLIGGI 110
            + E+ +    R   P  +IL P+RELA Q  +N         K GK   L   L +GGI
Sbjct: 243 ALEEESKLPFVRGEGPVGIILCPSRELANQTYENVVTWCAALAKDGKYPPLNSLLCMGGI 302

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q+  + +G  +++ TPGR++D   + K  +++ + L +DEADRM+D+GF   ++NI
Sbjct: 303 SMSDQSHVMSKGLHIVVATPGRLIDMLEKKKFTLDSCKYLCMDEADRMIDLGFEEDVRNI 362

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q+ +   L  P  + VN   + A  ++   V  Y +   
Sbjct: 363 MSFFKHQRQTLLFSATMPRKIQEFARESLIKP--VLVNVGRAGAANLDVLQVVEYVKQEA 420

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K   L + LQ   T    IIF   K  V ++   L  +G    AIHG+  Q  R   + +
Sbjct: 421 KMVYLLECLQK--TPPPVIIFSENKNEVDDIQEYLLLKGVEAVAIHGSKTQEERQYAIKS 478

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           FK G   +MVAS +A++GLD  ++ HV  F +P   E+Y+H+IGRTGR+G+ G A T V
Sbjct: 479 FKSGAKDVMVASGVASKGLDFSEIQHVIIFSMPKEIEDYVHQIGRTGRSGKTGIATTFV 537


>gi|156084736|ref|XP_001609851.1| DEAD box RNA helicase [Babesia bovis T2Bo]
 gi|154797103|gb|EDO06283.1| DEAD box RNA helicase, putative [Babesia bovis]
          Length = 714

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 129/386 (33%), Positives = 198/386 (51%), Gaps = 45/386 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A+  L  +++ A+ DAG+  PTPIQ++ IP+ L   D+ G+A+TG+GKT +FVLPMLT 
Sbjct: 299 WAESNLPSELLRAIKDAGFKSPTPIQMQAIPIGLGMRDLIGLAETGSGKTVAFVLPMLTY 358

Query: 62  ----------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
                      L+ G      P  L L PTRELA Q+     K+    +    L++GG  
Sbjct: 359 VKALPPLNEDTLQDG------PYALTLAPTRELATQIHAETVKFSAFCSCRTVLVVGGHS 412

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q  +L  GA+++I TPGRI D  +R   ++     +++DEADRM+DMGF   + +I 
Sbjct: 413 VDQQGFELRNGAEIVIGTPGRIKDCLDRSYTVLTQCNYVILDEADRMIDMGFEEIVNDIL 472

Query: 172 SLVPFT------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEV 207
             +P +                        R T +FSATM   ++K+++ +L++P  + +
Sbjct: 473 DCIPTSNLKDLDENLALQQELSTKAGYRKYRITQMFSATMPAAVEKLTKKYLRSPVIVSI 532

Query: 208 NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
               S  ++I   F   +    +K   LQ LL + +     I+F N KK    +   +  
Sbjct: 533 GDVGSGKKSITQRF--EFITEHRKKQKLQDLLHTLEGQI--IVFVNMKKVADVVARHISN 588

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
                 ++HG   Q  R   L +FK G   ++VA+D+  RGLD+  V  V NFD+P   E
Sbjct: 589 MNLRAISLHGGKTQDIREGALESFKAGDFDILVATDVVGRGLDVKGVTAVINFDMPKDIE 648

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKED 353
            Y HRIGRTGRAG  G A + V ++D
Sbjct: 649 TYTHRIGRTGRAGAKGMAISFVTEDD 674


>gi|146422477|ref|XP_001487176.1| eukaryotic initiation factor 4A [Meyerozyma guilliermondii ATCC
           6260]
 gi|152032535|sp|A5DB98|IF4A_PICGU RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|146388297|gb|EDK36455.1| eukaryotic initiation factor 4A [Meyerozyma guilliermondii ATCC
           6260]
          Length = 396

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 134/376 (35%), Positives = 205/376 (54%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L P +V  +   GY  P+ IQ + I  + +  DV   AQ+GTGKTA+F +  L  
Sbjct: 24  FDDLNLKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQR 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++    ++  + LIL PTRELA Q+ +     G   N+TV   IGG   +   +  + G
Sbjct: 84  IDEN---LKATQALILAPTRELALQIQNVITHIGLYLNVTVHASIGGTSMKDDIEAFKSG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ D   R     + +++ ++DEAD ML  GF   I NI  L+P T Q +L
Sbjct: 141 VQIVVGTPGRVFDMIERRFFRTDKVKMFIMDEADEMLSSGFKEQIYNIFRLLPETTQVVL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+ NP RI V     T E I+  ++    Q   K   L  L  S 
Sbjct: 201 LSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYI-NVEQEDFKFDCLCDLYDSI 259

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            ++   +IFCN +  V  L   L+ + F+V AIH ++ Q  R  I++ F+ G+ ++++A+
Sbjct: 260 -SVTQAVIFCNTRSKVEFLTTKLKAENFTVSAIHADLPQSDRDTIMNEFRSGSSRILIAT 318

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  ED+  +  IEK
Sbjct: 319 DLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDEDVGMMREIEK 378

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  ++  L
Sbjct: 379 FYSTQIEEMPANIGEL 394


>gi|111023386|ref|YP_706358.1| ATP-dependent RNA helicase [Rhodococcus jostii RHA1]
 gi|110822916|gb|ABG98200.1| ATP-dependent RNA helicase [Rhodococcus jostii RHA1]
          Length = 481

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 196/376 (52%), Gaps = 14/376 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+   +V A+ D G   P PIQ+ T+P  L   DV G  +TG+GKT +F +PM++ 
Sbjct: 18  FAALGVREPLVKALADKGITSPFPIQVDTLPDTLSGRDVLGRGKTGSGKTLAFSIPMVSR 77

Query: 63  L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L      G+ R   P  LIL PTRELA Q+    E     Y+L V  + GG+    Q   
Sbjct: 78  LAGELSGGKRRPGRPVGLILAPTRELATQITAALEPLAAAYDLRVTTIFGGVSQNRQVSA 137

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+++  PGR+ D   +  + ++ +EI V+DEAD M D+GF+P +  I +  P   
Sbjct: 138 LKAGVDIVVACPGRLEDLMKQKFVSLDAVEITVLDEADHMADLGFLPVVTRILTATPQHG 197

Query: 179 QTLLFSATMTDELQKVSENFLQNP---KRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
           Q LLFSAT+ + + K+ + FL+N       E N+P   A    H F     +  +K  L+
Sbjct: 198 QRLLFSATLDNGVDKLVKRFLKNEVLHSVDEANSP--VAAMTHHVFDVDGVEAKRK--LV 253

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++L          I+F   K     L   L + G     +HGN+ Q +R + L++F  G 
Sbjct: 254 ERLASGTGRR---ILFMRTKHQARKLARQLTEAGIPSVDLHGNLSQAARDRNLASFSAGE 310

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            +++VA+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   T+V  E  K
Sbjct: 311 ARVLVATDVAARGVHVDDVQLVVHVDPPAEHKAYLHRSGRTARAGSAGDVVTVVLPEQRK 370

Query: 356 HIDAIEKLIEKKVDWL 371
            +  + +    KV  L
Sbjct: 371 DLAVLMRKAAIKVTPL 386


>gi|115444197|ref|NP_001045878.1| Os02g0146600 [Oryza sativa Japonica Group]
 gi|75325389|sp|Q6Z2Z4|IF4A3_ORYSJ RecName: Full=Eukaryotic initiation factor 4A-3; Short=eIF-4A-3;
           AltName: Full=ATP-dependent RNA helicase eIF4A-3;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 23;
           AltName: Full=eIF4A-2
 gi|45736055|dbj|BAD13081.1| putative translational initiation factor eIF-4A [Oryza sativa
           Japonica Group]
 gi|113535409|dbj|BAF07792.1| Os02g0146600 [Oryza sativa Japonica Group]
 gi|125538069|gb|EAY84464.1| hypothetical protein OsI_05839 [Oryza sativa Indica Group]
 gi|215707096|dbj|BAG93556.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222622164|gb|EEE56296.1| hypothetical protein OsJ_05367 [Oryza sativa Japonica Group]
          Length = 414

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 201/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 43  FDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G    +   +L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 103 LDYGLVECQ---SLVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASG 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 160 VHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 220 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLA 279

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 280 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  
Sbjct: 335 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFD 394

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     ++ L  +++ L
Sbjct: 395 IQRFYNVTIEELPANVADL 413


>gi|67468731|ref|XP_650379.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56466997|gb|EAL44993.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 542

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 213/365 (58%), Gaps = 7/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +++  L LS ++  A+ +AGY K T IQ ++IPL+L   D+   A+TG+GKT +F++P++
Sbjct: 81  IEYKSLNLSEEIQKALEEAGYTKMTTIQARSIPLLLMGKDIMAKARTGSGKTLAFLIPIV 140

Query: 61  TILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            IL K   + R     +I+ PTRELA Q  D  EK   +   T  L+IGG   + + + L
Sbjct: 141 EILNKIHFQTRNGTGAIIISPTRELAIQTFDVLEKILAHSERTRTLIIGGSSKKKEEEAL 200

Query: 120 ERGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++GA +++ TPGR+LDH  N    +  N++ LVIDEADR++++GF   ++ I + +P  R
Sbjct: 201 KKGASIVVATPGRLLDHIINTKCFIYRNLKCLVIDEADRIMEVGFEEEMRQILNRLPKNR 260

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQ 236
           QT+LFSAT ++++  ++   L+ P  I V + S  ST+  +E  +V   A+   +  LL 
Sbjct: 261 QTMLFSATQSEKVDDIANISLKQPVVINVESQSTISTSSKLEQGYVLIEAK--DRFRLLY 318

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L+ ++  K  I+F +  K V      L      V A+HG +DQ  R K+   F +   
Sbjct: 319 TFLR-KNKNKKTIVFMSSCKAVKFYSDLLNYIDIPVKALHGQLDQDKRTKVFFEFCKAKE 377

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++ +D+AARGLDIP V  +   D+P+  ++YIHR+GRT RA   G+A   V   +I+ 
Sbjct: 378 AILITTDIAARGLDIPAVDWIIQVDLPDSPKDYIHRVGRTARADTKGRALLFVQPCEIRI 437

Query: 357 IDAIE 361
           ++ ++
Sbjct: 438 LEYLK 442


>gi|21224259|ref|NP_630038.1| DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
 gi|256784656|ref|ZP_05523087.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
 gi|289768540|ref|ZP_06527918.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
 gi|2815333|emb|CAA16457.1| probable DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
 gi|289698739|gb|EFD66168.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
          Length = 498

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 134/431 (31%), Positives = 216/431 (50%), Gaps = 11/431 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +  +++ A+   G   P PIQ  T+P  L   D+ G  +TG+GKT +F L +L  
Sbjct: 71  FADLDMPGELLAALGQQGVTVPFPIQAATLPNSLAGRDIMGRGRTGSGKTLAFGLALLAR 130

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y ++  L +A ++GG+    Q   L  G
Sbjct: 131 TAGRRAEPRQPLGLVLVPTRELAQQVTDALTPYARSVKLRLATVVGGMSIGRQASALRGG 190

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D  +RG   +N + + V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 191 AEVVVATPGRLKDLIDRGDCRLNQVSVTVLDEADQMADMGFMPQVTALLDQVRPEGQRML 250

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  +    T+EH  +  +   + K A   ++    
Sbjct: 251 FSATLDRNVDLLVRRYLSDPVVHSVDPSAGAVTTMEHHVL--HVHGADKHAATTEIAARD 308

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F + K  V  L   L   G    A+HG   Q  R + L+ FK G + ++VA+
Sbjct: 309 GRV---IMFLDTKHAVDRLTRDLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVAT 365

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           ++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV     + +  +  
Sbjct: 366 NVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRGM--VRL 423

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR-RKKNYSSQKSHIP 421
           + E  +      +S  +  L +I  AQ   A    P+   +   +R +K+  +S+    P
Sbjct: 424 MSEAGIRPQTTQVSPGDEALSRITGAQ---APTGIPVVITAPATERPKKRGATSRGRRRP 480

Query: 422 LKESEKISKLQ 432
              + +   L+
Sbjct: 481 ASATRRTPALK 491


>gi|302801091|ref|XP_002982302.1| hypothetical protein SELMODRAFT_228839 [Selaginella moellendorffii]
 gi|300149894|gb|EFJ16547.1| hypothetical protein SELMODRAFT_228839 [Selaginella moellendorffii]
          Length = 412

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 197/379 (51%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 41  FDSMGLHENLLRGIYAYGFEKPSAIQQRGIVPFCRGLDVIQQAQSGTGKTATFCSGILQQ 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     +   + L+L PTRELA Q+       G      V   +GG       +  + G
Sbjct: 101 LD---GHLNECQALVLAPTRELAQQIEKVMRALGDYLQTKVHACVGGTDVRQDQRICQSG 157

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L   +I + V+DEAD ML  GF   I +I  L+P   Q  L
Sbjct: 158 VHVVVGTPGRVYDMLRRRALRSEHIRMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGL 217

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 218 FSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLA 277

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IFCN ++ V  L   L  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 278 ITQ-----SVIFCNTRRKVDWLTDKLRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 332

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   + K+D K +  
Sbjct: 333 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFLTKDDEKMLFD 392

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     ++ L  +++ L
Sbjct: 393 IQKFYNTVIEELPSNVADL 411


>gi|50305865|ref|XP_452893.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660558|sp|Q6CT46|DBP3_KLULA RecName: Full=ATP-dependent RNA helicase DBP3
 gi|49642026|emb|CAH01744.1| KLLA0C15499p [Kluyveromyces lactis]
          Length = 504

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 126/342 (36%), Positives = 198/342 (57%), Gaps = 7/342 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           + KPTPIQ  + P +L   DV GIA+TG+GKT +F +P +  +     +    + L++ P
Sbjct: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TRELA+Q+ DN         L    + GG+P + Q + L R + V++ TPGR+LD    G
Sbjct: 172 TRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRR-SQVVVATPGRLLDLIEEG 230

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQTLLFSATMTDELQKVSENFL 199
            + ++++  LV+DEADRML+ GF   I+ I      T RQTL+F+AT   E+++++ +F+
Sbjct: 231 SVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFM 290

Query: 200 QNPKRIEV---NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI-IFCNQK 255
             P ++ +   +  S+     +   V    +  KK   L +   S  T  + + IF   K
Sbjct: 291 SEPVKVSIGNRDELSANKRITQIVEVVDPFRKEKKLLELLKKYHSGPTKNDKVLIFALYK 350

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           K    +  +L+  G+ V AIHG++ Q+ R + L+ FK G   L++A+D+AARGLDIP+V 
Sbjct: 351 KEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVK 410

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            V N   P   E+Y+HRIGRTGRAG++G A TL  +++ KH+
Sbjct: 411 TVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQE-KHL 451


>gi|326914387|ref|XP_003203507.1| PREDICTED: probable ATP-dependent RNA helicase DDX10-like, partial
           [Meleagris gallopavo]
          Length = 658

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 133/378 (35%), Positives = 212/378 (56%), Gaps = 24/378 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P L +
Sbjct: 75  FSDFPLSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALEL 134

Query: 63  LEKGRARVRMPRT-------LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           L       R+  T       LI+ PTRELA Q      K GKN++ +  L+IGG   + +
Sbjct: 135 L------YRLQWTSADGLGVLIISPTRELAFQTFKVLRKVGKNHDFSAGLIIGGKDLKEE 188

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           ++++    ++LICTPGR+L H +       +++++L++DEADR+LDMGF   +  I   +
Sbjct: 189 SERIHH-INMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENL 247

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKC 232
           P  RQTLLFSAT T  ++ ++   L++P+ + V+  +  ST  T++  ++    Q+  K 
Sbjct: 248 PKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLDQNYIVCELQH--KI 305

Query: 233 ALLQQLLQSQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            +L   L+S    K+ + F  C + + +  +   L+  G  V A+HG   Q  RM++ + 
Sbjct: 306 NVLYSFLRSHLKKKSIVFFASCKEVQYLFRVFCKLQP-GLPVLALHGKQQQMKRMEVYTC 364

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F      ++ A+D+AARGLD P V  V  FD P  A  YIHR+GRT R    G+A  ++ 
Sbjct: 365 FVRKKAAVLFATDIAARGLDFPAVNWVIQFDCPEDANTYIHRVGRTARYKEGGEALLVLL 424

Query: 351 KEDIKHIDAIEKLIEKKV 368
             + K +  +E+L ++KV
Sbjct: 425 PSEEKGM--VEQLAQRKV 440


>gi|164424264|ref|XP_958421.2| eIF4A [Neurospora crassa OR74A]
 gi|161789047|sp|Q7RV88|IF4A_NEUCR RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|157070442|gb|EAA29185.2| eIF4A [Neurospora crassa OR74A]
          Length = 397

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 132/376 (35%), Positives = 214/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L P+++  +   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F    +++
Sbjct: 26  FDEMNLKPELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATF---SISV 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    ++  + LIL PTRELA Q+       G   N+     IGG       K L+ G
Sbjct: 83  LQKIDPSLKACQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVRDDMKALQDG 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 143 PQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F++ P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 203 LSATMPQDVLEVTTKFMREPVRILVKKDELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 261

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A+
Sbjct: 262 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIAT 320

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 321 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 380

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 381 FYSTQIEEMPMNVADL 396


>gi|221059063|ref|XP_002260177.1| RNA helicase [Plasmodium knowlesi strain H]
 gi|193810250|emb|CAQ41444.1| RNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 398

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 126/352 (35%), Positives = 193/352 (54%), Gaps = 13/352 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL+ K++  +   G+ KP+ IQ + I  +L  +D  G AQ+GTGKTA+FV+  L +
Sbjct: 25  FDALGLNEKLLRGIYSYGFEKPSAIQQRGIKPILNGYDTIGQAQSGTGKTATFVISSLQL 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +      V   + LIL PTRELA Q+       G    +     +GG        KL++G
Sbjct: 85  INYD---VVACQALILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDIDKLKQG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPFTRQTL 181
             +++ TPGR+ D  ++  L ++ +++ ++DEAD ML  GF   I  +   LVP   Q  
Sbjct: 142 VHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVP-DIQVA 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQL 238
           LFSATM  E+ +++  F+++PK I V     T E I   +VA   +  K    C L + L
Sbjct: 201 LFSATMPQEILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLCDLYETL 260

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                T+   II+CN +K V  L   +  + F+V  +HG++DQ+ R  I+  F+ G+ ++
Sbjct: 261 -----TITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRV 315

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           +V +DL ARG+D+  V  V N+D+P   + YIHRIGR+GR GR G A   V 
Sbjct: 316 LVTTDLLARGIDVQQVSLVINYDLPTSPDTYIHRIGRSGRFGRKGVAINFVT 367


>gi|149378257|ref|ZP_01895969.1| RNA helicase DbpA [Marinobacter algicola DG893]
 gi|149357454|gb|EDM45964.1| RNA helicase DbpA [Marinobacter algicola DG893]
          Length = 381

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 129/374 (34%), Positives = 199/374 (53%), Gaps = 11/374 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGLS  ++  +   G+  PTPIQ   +P  L   D+  +AQTG+GKTA+F + ++  
Sbjct: 4   FSQLGLSEPMLANLSRLGFENPTPIQSGALPHALAGKDLIAMAQTGSGKTAAFGIGLVER 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L   R  V+    L+L PTRELA QVA +  +  +   N+ +  L GG+    Q   L  
Sbjct: 64  LNPRRFSVQ---GLVLCPTRELADQVAKSLRELARARDNVKILSLCGGVAIGPQIGSLSH 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI DH  +G L ++ +  L++DEADRMLDMGF   +++I S  P  RQTL
Sbjct: 121 GAHIVVGTPGRIQDHLRKGTLKLDQLITLILDEADRMLDMGFQDAVEDIISQAPAKRQTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT  D ++K+SE +   P  + + + +  ++  E  +     Q  +  A L  L Q 
Sbjct: 181 MFSATWPDNIRKLSEQYQHAPADVRIESQAVESDITERFYEIAPGQQVQAVAALLSLHQP 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I FC  K+   ++ + L   GF+   +HG+++QR R  +L  F   +  ++VA
Sbjct: 241 ASC----IAFCTTKQQCDDVANELNGLGFAALPLHGDLEQRDRDSVLVRFGNQSCSVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRI-GRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +D+AARGLDI  +  V N +     E + HRI  R GR  R G  F   ++     I+ +
Sbjct: 297 TDVAARGLDIKSLPLVVNVEPARDPEVHTHRIVDRPGRGARAGGHFCTPSQA--HKINGL 354

Query: 361 EKLIEKKVDWLNGD 374
           E   ++ V W   D
Sbjct: 355 ESGRKQAVTWGETD 368


>gi|324513918|gb|ADY45697.1| ATP-dependent RNA helicase [Ascaris suum]
          Length = 435

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 118/322 (36%), Positives = 191/322 (59%), Gaps = 7/322 (2%)

Query: 48  GTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
           G+GKTA+F LP+L  L     ++     LIL PTRELA Q+A+ F+  G +  L VA+++
Sbjct: 37  GSGKTAAFALPILQALLDTPQKLF---ALILTPTRELAFQIAEQFDALGASIGLLVAVIV 93

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPY 166
           GG+    Q   L +   V++ TPGR++DH    K   +  ++ LV+DEADR+L+M F   
Sbjct: 94  GGVDMVTQALALAKRPHVIVATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFEVE 153

Query: 167 IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
           +  I  ++P  R+T L+SATMT ++ K+    L++P R+EV +   T + ++  ++    
Sbjct: 154 LDKILKVLPKERRTYLYSATMTKKVAKLERASLRDPARVEVCSKYKTVDKLKQHYIFIPQ 213

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           +Y  K A L  +L ++   +  I+FC    + +     L + GF    +HG + Q  R+ 
Sbjct: 214 KY--KEAYLVYIL-NEMAGQTAIVFCATCASTMKTALMLRQLGFGAVPLHGQMSQAKRLG 270

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L+ FK     ++V +D+A+RGLDIP+V  V N+DVP+++++Y+HR+GRT RAGR G + 
Sbjct: 271 SLNKFKSKVRPILVCTDVASRGLDIPNVDAVLNYDVPSQSKDYVHRVGRTARAGRSGVSI 330

Query: 347 TLVAKEDIKHIDAIEKLIEKKV 368
           T V + D++    IE LI KK+
Sbjct: 331 TFVTQYDVEVYQRIEHLIGKKL 352


>gi|123478847|ref|XP_001322584.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121905433|gb|EAY10361.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 703

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 123/351 (35%), Positives = 192/351 (54%), Gaps = 9/351 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           Y KPTPIQ + IP+VL  HDV  +++TG+GKTASF+LP++  L +  + +   R LI+ P
Sbjct: 20  YRKPTPIQKEVIPVVLADHDVVAMSKTGSGKTASFLLPIVQKLNE-HSTITGCRCLIITP 78

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           +RELA Q    F+KY    NL  A +IGG     Q + L +  DV+I TPGR+L      
Sbjct: 79  SRELALQTGHYFQKYASQTNLKCAQIIGGEALPPQFESLTKNPDVIIATPGRLLQIIAET 138

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200
           +  ++ ++I+VIDEAD + + G  P +  I  L+P   Q+LLFSAT+   L + +   L 
Sbjct: 139 QYSLSRVQIIVIDEADLLFEQGLEPQMTAILKLLPEKHQSLLFSATVPSVLAEFTRINLS 198

Query: 201 NPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
               I ++        T+   FV  Y     K AL   LLQ+    +  ++F   + +  
Sbjct: 199 RATVIRIDQSKLPKTLTVNFLFVNPYY----KPAL---LLQTVTEYRRSLVFVATRYHAE 251

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            L   L        AI+GN+DQ  R   L+ F  G+++ +V +D+AARGLDI  +  V N
Sbjct: 252 FLSAFLRDSNLKSAAIYGNMDQDERSSSLAAFSRGSLRCLVVTDVAARGLDIEGLEAVVN 311

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           +D P R + ++HR GR+GRAG  G+  + V  +++ +     + ++++  W
Sbjct: 312 YDFPERPKVFLHRAGRSGRAGLKGEVVSFVTHDELPYYVGAREALQEEEPW 362


>gi|224285398|gb|ACN40422.1| unknown [Picea sitchensis]
          Length = 428

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 133/393 (33%), Positives = 205/393 (52%), Gaps = 16/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    Q  DV   AQ+GTGKTA+F      I
Sbjct: 40  FDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCQGLDVIQQAQSGTGKTATFCS---GI 96

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++    V   + L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 97  LQQLNYNVPECQALVLAPTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLRILQAG 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 157 VHVVVGTPGRVYDMLRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPTNLQVGV 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+ NP RI V     T E I+  +V    +  K    C L + L 
Sbjct: 217 FSATMPPEALEITRKFMTNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLA 276

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 277 ITQ-----SVIFINTRRKVDWLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 331

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V K+D + +  
Sbjct: 332 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLQD 391

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           I++     ++ L  +++  N     I I Q  H
Sbjct: 392 IQRFYNVVIEELPNNVADFN-----IKILQKQH 419


>gi|242023201|ref|XP_002432024.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212517382|gb|EEB19286.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 610

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 129/363 (35%), Positives = 198/363 (54%), Gaps = 21/363 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
             F + GL+  V+  V    Y  PTPIQ +  P+ L   ++ GIA+TG+GKT  FVLP +
Sbjct: 201 FSFEETGLADDVINIVRKLNYFAPTPIQSQGWPIALSGQNMVGIARTGSGKTLGFVLPAV 260

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTREL  Q  +    + +   +    + GG     
Sbjct: 261 IHIQHQPKLERGDG----PIALVLAPTRELVQQTQNVAIPFARASGIRSVAVYGGSDKYG 316

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q++ L  G ++ + TPGR+LD  N G   +     LV+DEADRM DMGF P I++I   +
Sbjct: 317 QDRHLRNGTEICVATPGRLLDFLNSGTTNLERCTYLVLDEADRMFDMGFEPQIRSIIDQI 376

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE-TIEHCFVATYAQYSKKCA 233
              RQ L++SAT   E+++++E +L++  ++ V +   TA   I        ++  KK  
Sbjct: 377 RPDRQVLMWSATWPKEIKRLAEEYLKDYIQLNVGSQELTANPNINQIVHVCQSERDKK-- 434

Query: 234 LLQQLLQ---SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            LQ +L+    QD +K  +IF   K+   ++   L+  G+   ++HG   Q++R  IL  
Sbjct: 435 KLQNVLKEIGEQDEIKT-LIFTATKQKSDSIAFWLQDLGYRCDSLHGGKTQKNRDFIL-- 491

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
              G I+++VA+D+AARGLD+ D+ +V N+D PN  E+YIHRIGRTGR    G ++T + 
Sbjct: 492 --RGRIKILVATDVAARGLDVSDIRYVINYDYPNNMEDYIHRIGRTGRHNATGTSYTFLT 549

Query: 351 KED 353
            ED
Sbjct: 550 DED 552


>gi|223983404|ref|ZP_03633590.1| hypothetical protein HOLDEFILI_00870 [Holdemania filiformis DSM
           12042]
 gi|223964576|gb|EEF68902.1| hypothetical protein HOLDEFILI_00870 [Holdemania filiformis DSM
           12042]
          Length = 474

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 112/335 (33%), Positives = 194/335 (57%), Gaps = 6/335 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
           AV    Y +PTP+Q + IP  L+  D    A+TG+GKTA++ LP   + ++     R+P+
Sbjct: 17  AVEALHYTQPTPVQEQVIPAFLEGRDCLVQAKTGSGKTAAYALP---VCQQCHFEDRLPQ 73

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            LIL PTRELA Q+    + +     LT A L+G  P ++Q  +L++   ++I TPGR+ 
Sbjct: 74  ALILAPTRELADQITQEIQNFSLFRRLTCARLVGRQPMKSQKYQLKQRVQIVIGTPGRVW 133

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           DH  +G L ++ ++++V+DEAD+M  +G    +  I   +P   QT LFSAT++ E+ ++
Sbjct: 134 DHIEQGTLDLSQLKMIVLDEADQMFSLGLTETVHQILEQLPSPIQTCLFSATLSPEILQL 193

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           +E  + +P  I++++P  T + I    + T +   K   LL     S     + I+FC++
Sbjct: 194 AEITVHDPLTIQIDSPCQTNQNIRLTSL-TVSNTEKLTGLLHVF--STIQAPSAIVFCDR 250

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           +     +   L+K+G    A+HG ++Q  R  +L  F++G ++++ A+D+AARGLDI  +
Sbjct: 251 QMTAEEVAEQLKKRGLCADALHGGMEQDQRFAVLKQFRQGQLRILCATDVAARGLDIDGL 310

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
             + ++D+P   E++IHR GR GR  + G +  L+
Sbjct: 311 SLIVHWDLPLNLESFIHRCGRCGRIDQLGTSVALL 345


>gi|154686775|ref|YP_001421936.1| YqfR [Bacillus amyloliquefaciens FZB42]
 gi|154352626|gb|ABS74705.1| YqfR [Bacillus amyloliquefaciens FZB42]
          Length = 438

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 128/364 (35%), Positives = 197/364 (54%), Gaps = 9/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L P ++ AV   G+ +PT IQ + IP VL+   V G +QTGTGKT +++LP+L  
Sbjct: 6   FDGYNLKPFIIDAVHRLGFYEPTDIQKRLIPAVLKNESVIGQSQTGTGKTHAYLLPILNR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           ++ G   V+    +I  PTRELA Q+   A    +  ++  +     IGG   +    KL
Sbjct: 66  IDPGSDTVQ---AVITAPTRELANQIHQEALKITQGAEDEPIRTKCFIGGTDKQKSIDKL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +++ TPGRI D      L +   + LVIDEAD MLDMGF+  +  I S +P   Q
Sbjct: 123 KTQPHLVVGTPGRIADLIKAQALNVYKAQSLVIDEADLMLDMGFLEDVDYIGSRMPEELQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+ ++L+   + +++NPK   V     TAE IEH  V +  Q  K   L + + 
Sbjct: 183 MLVFSATIPEKLKPFLKKYMENPKYAHVEPKRITAEKIEHVLVPS-KQRDKDKLLFEMMS 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +  GI+F N K    ++   L ++G  V  +HG +  R R K++    +     +
Sbjct: 242 HLNPYL--GIVFANTKNTADHIAKYLTEKGMRVGLLHGGLTPRERKKVMKQINDLEFTYV 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+DLAARG+DI  V HV N+++P+  + Y+HR+GRT RAG  G+A T+    D   +  
Sbjct: 300 IATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQALTIYELSDEDALAR 359

Query: 360 IEKL 363
           +EK+
Sbjct: 360 LEKM 363


>gi|296810762|ref|XP_002845719.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28 [Arthroderma
           otae CBS 113480]
 gi|238843107|gb|EEQ32769.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28 [Arthroderma
           otae CBS 113480]
          Length = 801

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 124/379 (32%), Positives = 198/379 (52%), Gaps = 52/379 (13%)

Query: 10  PKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL----- 63
           PK +  ++D+ GY +P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L  +     
Sbjct: 380 PKRLLDIIDSVGYKEPSPIQRVAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYISSLPR 439

Query: 64  --EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             E    R   P  +IL PTRELA Q+     K+    N  V  ++GG   E Q   L  
Sbjct: 440 LDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEEQAYNLRN 499

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT---- 177
           GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +P +    
Sbjct: 500 GAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKP 559

Query: 178 ---------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
                                RQT++++ATM   +++++  +L+ P  + +       +T
Sbjct: 560 DTEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNVGEAVDT 619

Query: 217 IEHC--FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +E    FVA   +  K+ A    +L S++     I+F N K+N   +   ++  GFS   
Sbjct: 620 VEQRVEFVAGEDKRKKRLA---DILTSREYRPPIIVFVNIKRNCDAVARDIKHMGFSAVT 676

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PD              +Y HRIG
Sbjct: 677 LHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPD--------------SYTHRIG 722

Query: 335 RTGRAGRHGKAFTLVAKED 353
           RTGRAG+ G A T +  ED
Sbjct: 723 RTGRAGKSGVAITFLGNED 741


>gi|109077270|ref|XP_001100045.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 3
           [Macaca mulatta]
 gi|297294298|ref|XP_001099856.2| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 1
           [Macaca mulatta]
          Length = 725

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 198/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 304 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKE 363

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 364 LQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 423

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 424 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 483

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   V    Q+SK+  L++ L    D 
Sbjct: 484 TFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQT-VLQVGQFSKREKLVEILRNIGD- 541

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 542 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 600

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 601 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHL 653


>gi|312212571|emb|CBX92654.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1194

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 131/357 (36%), Positives = 195/357 (54%), Gaps = 10/357 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A +GL    +       Y +PT IQ + IP+     D+ G+A+TG+GKT +F +PM+  
Sbjct: 541 WAQMGLLQATMDVFTRVRYERPTSIQAQAIPIAESGRDLIGVAKTGSGKTLAFGIPMIRH 600

Query: 62  ILEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL++   +    P  LIL PTREL+ Q+    + +    N+T+    GG P   Q   ++
Sbjct: 601 ILDQRPLKGSDGPIGLILAPTRELSLQIVSELKPFLSASNITIKCAYGGQPISDQIAMIK 660

Query: 121 RGADVLIC-TPGRILD--HFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           RG   ++C T GR++D    N G++L    I  +V+DEADRM DMGF P +  I + +  
Sbjct: 661 RGGIHILCATAGRLIDLLQSNSGRVLNFKRITYVVLDEADRMFDMGFEPQVMKILATIRP 720

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LL 235
            RQT+LFSAT    +  ++   L  P  + +   S  A  I          Y KK A LL
Sbjct: 721 DRQTILFSATFPKSMASLARKALNKPAEVIIGGRSKVAPEITQIIEFVPPSYEKKIAKLL 780

Query: 236 QQLLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGF-SVCAIHGNIDQRSRMKILSNFK 292
             L Q  S++     +IF  +++   +L   L K  + SV  IHG  DQ  R + L++FK
Sbjct: 781 LHLGQVFSENENSQVLIFTERQETAEDLLSKLFKVSYLSVNTIHGAKDQTDRNEALNDFK 840

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +G + +++A+ +AARGLD+P +  VFNFD P   E+Y+HR GRTGRAG  G A TL+
Sbjct: 841 QGVLSILIATSVAARGLDVPGLALVFNFDCPTHLEDYVHRCGRTGRAGNKGTAITLI 897


>gi|242060494|ref|XP_002451536.1| hypothetical protein SORBIDRAFT_04g003390 [Sorghum bicolor]
 gi|241931367|gb|EES04512.1| hypothetical protein SORBIDRAFT_04g003390 [Sorghum bicolor]
          Length = 410

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 200/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 39  FDNMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 98

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G    +    L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 99  LDYGLVECQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASG 155

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 156 VHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGV 215

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 216 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLA 275

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 276 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 330

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  
Sbjct: 331 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFD 390

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     ++ L  +++ L
Sbjct: 391 IQRFYNVTIEELPANVADL 409


>gi|205374127|ref|ZP_03226927.1| DEAD-box ATP dependent DNA helicase [Bacillus coahuilensis m4-4]
          Length = 393

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 131/374 (35%), Positives = 205/374 (54%), Gaps = 11/374 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L P +  A+  AGY +PT IQ   IP+ L      G +QTGTGKT +++LP+L  
Sbjct: 6   FKIFELKPFINKAIEKAGYKEPTEIQQLIIPIALNGDSAIGQSQTGTGKTLAYLLPILES 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
           +   +  V+    +I  PTRELA Q+     K  +     +T  L IGG   +   +KL+
Sbjct: 66  INPNKDEVQ---AVITAPTRELAQQIFTEAMKLAEFSEEEITGKLFIGGTDKQRSIEKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D  N   L + +  +LV+DEAD MLDMGFI  +  I   +P   Q 
Sbjct: 123 KQPHLVVGTPGRIKDLVNEQALNVFSANMLVVDEADLMLDMGFIHDVDQIAGRMPKDLQI 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+ ++L+     +++NP+   V    +TA  IEH  +   ++  +K A+++ +L 
Sbjct: 183 LVFSATIPEKLKPFLNKYMENPEYANVQPKQATAANIEHILIPKRSR--EKVAVVETILS 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF N K     +  +L K+G  V  +HG +  R R K +   +    Q +V
Sbjct: 241 GINPYL-AIIFTNTKVKADEVAAALSKRGIKVGRLHGGLTPRERTKEMKAIRNLEYQYIV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI  V H+ N+++P   + YIHR+GRT RAG  G AFT+    ++   DA+
Sbjct: 300 ATDLAARGIDIDGVSHIINYELPQDLDFYIHRVGRTARAGLTGVAFTIY---EVSDEDAL 356

Query: 361 EKLIEKKVDWLNGD 374
            +L  + +++L+ D
Sbjct: 357 NRLESRGIEFLHQD 370


>gi|169629244|ref|YP_001702893.1| ATP-dependent RNA helicase [Mycobacterium abscessus ATCC 19977]
 gi|169241211|emb|CAM62239.1| Probable ATP-dependent RNA helicase [Mycobacterium abscessus]
          Length = 438

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 122/356 (34%), Positives = 190/356 (53%), Gaps = 13/356 (3%)

Query: 10  PKVVCAVLDAGYV-KPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
           P  +  VL  G +  P PIQ  T+P  L   DV    +TG+GKT  F +P++  +  G  
Sbjct: 2   PAPLVNVLTRGGIDAPFPIQAATLPDTLGGRDVLARGKTGSGKTLGFSIPVVARIADGTR 61

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
               PR L+L PTRELA Q++   E     Y + V  + GG+    Q + L+ G D+++ 
Sbjct: 62  VPGRPRALVLAPTRELATQISAVIEPLAAAYRMKVTTIFGGVSQHRQVQALKAGVDIVVA 121

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
            PGR+ D   +G L ++ IEI V+DEAD M D+GF+P +  + +  P + Q LLFSAT+ 
Sbjct: 122 CPGRLDDLLKQGHLTLDGIEISVLDEADHMADLGFLPVVTRLLAATPSSGQRLLFSATLD 181

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
           +++ K+ + FL +P    V+   S    + H   A     +K+     +L+   +T+ +G
Sbjct: 182 NDVDKLVKRFLHSPAEHSVDPVDSPVAAMTHHVFAVAGPDAKR-----ELI---NTLASG 233

Query: 249 ----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
               I+F   K +   L   L + G     +HGN+ Q +R + L+ F  G  +++VA+D+
Sbjct: 234 TGRRILFMRTKHHAKRLARQLTQSGIPSVDLHGNLSQGARDRNLAAFANGEARVLVATDV 293

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           AARG+ + DV  V + D P   + Y+HR GRT RAG  G   TLV  E  + +DA+
Sbjct: 294 AARGVHVDDVALVVHVDPPAEHKAYLHRSGRTARAGGTGDVVTLVLPEQRRDVDAL 349


>gi|3775989|emb|CAA09197.1| RNA helicase [Arabidopsis thaliana]
          Length = 411

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 125/336 (37%), Positives = 192/336 (57%), Gaps = 8/336 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILEK-----GRARVRMPR 74
           + KP+PIQ  T P +L   D+ GIA+TG+GKT +F +P ++ +L+K     G ++   P 
Sbjct: 8   FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPT 67

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTRELA Q++D   + G+   L    + GG     Q   +  G D++I TPGR+ 
Sbjct: 68  CLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLR 127

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D      L ++++  +V+DEADRMLDMGF   ++ I S     RQ ++FSAT   ++ K+
Sbjct: 128 DLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKL 187

Query: 195 SENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI-IFC 252
           ++ F+  NP ++ + +    A       +    + ++   L+  L +   + KN + +F 
Sbjct: 188 AQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFA 247

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             K     L   L+++G+   +IHGN  Q  R + LS FKEG+  L+VA+D+AARGLDIP
Sbjct: 248 LYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIP 307

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           DV  V N+  P   E+Y+HRIGRTGRAG+ G A T 
Sbjct: 308 DVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTF 343


>gi|307193157|gb|EFN76062.1| ATP-dependent RNA helicase DDX54 [Harpegnathos saltator]
          Length = 772

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 125/356 (35%), Positives = 199/356 (55%), Gaps = 4/356 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L+  V+  +L  GY  PTPIQ KTIPL L+  D+  +A+TG+GKTA F++P+   
Sbjct: 37  FQSMALTFPVLKGILKRGYKIPTPIQRKTIPLALEGRDIVAMARTGSGKTACFLIPLFEK 96

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K R      R LIL PTRELA Q     ++ GK   L  A+++GG   + Q   +   
Sbjct: 97  L-KTRLAKTGARALILSPTRELALQTLKFIKELGKFTGLKAAVILGGDSIDDQFSAIHGN 155

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR L       L + N+E +V DEADR+ +MGF   I  I + +P +RQTLL
Sbjct: 156 PDIIVATPGRFLHICVEMDLQLKNVEYVVFDEADRLFEMGFGEQIHEIVNRLPESRQTLL 215

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L   ++  L +P  + ++  S   E +E  F+    +  +K A+L  LL+  
Sbjct: 216 FSATLPKVLVDFAKAGLSDPVLLRLDVESKLPEGLELSFITCRPE--EKLAVLLCLLKRV 273

Query: 243 DTMKNGIIFCNQKKNVVNLCHS-LEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               + II   +  + V   H  L+K       I+ N+D  +R    + F+ G  ++++ 
Sbjct: 274 IKEDSQIIIFAETMHHVEYIHQILDKAKIINTFIYSNLDPSARKINTAKFQTGKAKVLIV 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +D+AARG+DIP +  V NF+ P +++ ++HR+GR  RAGR G A+ +V+ ++  ++
Sbjct: 334 TDVAARGIDIPHLDCVINFNFPAKSKLFVHRVGRCARAGRAGTAYNIVSVDEYPYL 389


>gi|317152754|ref|YP_004120802.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316943005|gb|ADU62056.1| DEAD/DEAH box helicase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 681

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 125/344 (36%), Positives = 199/344 (57%), Gaps = 7/344 (2%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
            L  K+  A   AG+ K  P+Q K +P +L+  DV   A+TG+GKT +FVLP+L  L+  
Sbjct: 27  ALPDKLRKACDRAGWTKLMPVQQKAMPFLLEDRDVMVQARTGSGKTGAFVLPLLQKLD-- 84

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
            A +   + L++ PTRELA QVAD          + V  + GG+ ++ Q      GA ++
Sbjct: 85  -ANLPQCQALVMVPTRELARQVADEALMLSGEEGIGVVAVYGGVGYKEQLDAFRDGAQLV 143

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQTLLFSA 185
           + TPGRILDH  R  L +++++ L+ DEADRML +GF P +  +   +P T R   +FSA
Sbjct: 144 VGTPGRILDHLVRRNLTLDHLKTLIFDEADRMLSVGFYPDMVEVKRYLPRTLRGAYMFSA 203

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           T    + +++E F+  P+ + +++  +   +I H FV   A   ++   L +L++ ++  
Sbjct: 204 TFPQSVLRLAEEFMDKPEFLSLSSDEANISSIAHQFVEVAAMGKERK--LIKLIELENPT 261

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
            + +IF N K+NV      L + GF    +  ++ Q  R  +++  KEG ++ +VA+D+A
Sbjct: 262 -SALIFSNTKRNVEFTAALLSQFGFDAEGLTSDLTQGKRESLMARIKEGKLRFLVATDVA 320

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ARG+DIP++ HVF  + P   E+Y+HR GRTGRAG  G A TLV
Sbjct: 321 ARGIDIPELSHVFMLEPPEDPESYVHRAGRTGRAGATGTAITLV 364


>gi|321252102|ref|XP_003192288.1| pre-mRNA splicing factor [Cryptococcus gattii WM276]
 gi|317458756|gb|ADV20501.1| pre-mRNA splicing factor, putative [Cryptococcus gattii WM276]
          Length = 1063

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 126/388 (32%), Positives = 206/388 (53%), Gaps = 11/388 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++   GL    +  +   G+  PT IQ + IP ++   DV GIA+TG+GKT +F+LPML 
Sbjct: 395 NWGAFGLPQGCLDVIKHQGWETPTSIQAQAIPAIMSGRDVIGIAKTGSGKTVAFLLPMLR 454

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R  +    P  ++L PTRELA Q+    + + K  N+  +  +GG         +
Sbjct: 455 HVRDQRPVSGSEGPIAVVLSPTRELATQIYKECQPFLKVLNIRASCCVGGSSISEDIAAM 514

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIE---ILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++GA+V+ICTPGR++D        + N+     +V+DEADRM DMGF P +  I + V  
Sbjct: 515 KKGAEVVICTPGRMIDLLTANNGRVTNVRRTTYIVMDEADRMFDMGFEPQVMKIINNVRP 574

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q +LFSAT    ++ ++   L  P  I V   S  A  I+   V      +K   LL+
Sbjct: 575 NAQKVLFSATFPKTMESLARKILVKPLEITVGGRSVVAPEIDQ-RVEVRDGDTKFTRLLE 633

Query: 237 QLLQSQDTMKN-----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
            L +  +  K+      +IF +++++  +L   L ++G+   ++HG  +Q  R + + NF
Sbjct: 634 ILGEMGEEHKDEDDFRALIFVDRQESADDLFRELLQRGYVCASLHGGKEQVDRDEAIKNF 693

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G + ++VA+ +AARGLD+ ++  V N+D PN  E+Y+HR GRTGRAG  G   T +  
Sbjct: 694 KNGDVPIIVATSVAARGLDVKELKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCITFITP 753

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           E  +    I + +E    ++  DL  ++
Sbjct: 754 EQERFSVDIVRALEASKAFIPDDLKQMS 781


>gi|317140423|gb|ADV03672.1| vasa-like protein [Gadus morhua]
          Length = 354

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 125/333 (37%), Positives = 192/333 (57%), Gaps = 14/333 (4%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L  ++  G A      
Sbjct: 25  VAKSGYVKPTPVQKHGIPIIAAGRDIMACAQTGSGKTAAFLLPILQKLMADGVAASSFSE 84

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   +L GGI    Q + L RG +VL  T
Sbjct: 85  QQEPEAIIVAPTRELINQIFLEARKFAHGTCVRPVVLYGGISTGHQIRDLLRGCNVLCGT 144

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   RGK+ +  +  LV+DEADRMLDMGF P ++ +           RQTL+FSA
Sbjct: 145 PGRLMDMIGRGKVGLTKLRYLVMDEADRMLDMGFEPEMRRLVGSPGMPSKEERQTLMFSA 204

Query: 186 TMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +++Q+++ +FL+     + V         +E   V    ++SK+  LL  +L++  T
Sbjct: 205 TYPEDIQRMAGDFLKKDYLFLAVGVVGGACSDVEQKLVQV-TKFSKRDQLLD-ILKNTGT 262

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   K+    +   L ++  +  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 263 ERT-MVFVETKRQADFIAAFLCQENVATTSIHGDREQREREQALGDFRSGKCPVLVATSV 321

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           AARGLDI DV HV NFD+PN  ++Y+HRIGRTG
Sbjct: 322 AARGLDIKDVQHVVNFDLPNNIDDYVHRIGRTG 354


>gi|162458395|ref|NP_001105396.1| translational initiation factor eIF-4A [Zea mays]
 gi|2341061|gb|AAB67607.1| translational initiation factor eIF-4A [Zea mays]
          Length = 414

 Score =  216 bits (549), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 200/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 43  FDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G    +    L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 103 LDYGLVECQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASG 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 160 VHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGV 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 220 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDLYETLA 279

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 280 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V +++ + +  
Sbjct: 335 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDNERMLFD 394

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     ++ L  +++ L
Sbjct: 395 IQKFYNVLIEELPANVADL 413


>gi|327277992|ref|XP_003223747.1| PREDICTED: nucleolar RNA helicase 2-like [Anolis carolinensis]
          Length = 628

 Score =  216 bits (549), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 207/374 (55%), Gaps = 21/374 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  LS   V  +   G     P+Q+KT   + +  DV   A+TGTGKT SF +P++  
Sbjct: 50  FSNFDLSKATVDLLKARGVTYLFPVQVKTFKHISEGKDVIAQARTGTGKTFSFAIPLIEK 109

Query: 63  LEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++    R R R P+ L+L PTRELA QVA +F+   +   LTVA   GG  +  Q   +
Sbjct: 110 LQRDSQERKRGRTPKVLVLAPTRELAMQVARDFKDVTRK--LTVACFYGGTAYNGQLDLI 167

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV----- 174
             G D+L+ TPGRI DH   GKL +++++ +V+DE D+MLDMGF   +++I         
Sbjct: 168 RNGIDILVGTPGRIKDHLENGKLEISSLKHVVLDEVDQMLDMGFADQVEDILKYAYKKDS 227

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
               QTLLFSAT    +  V++ ++++  ++I++       TA T+EH  +A    +S++
Sbjct: 228 EDNPQTLLFSATCPHWVYDVAKKYMKSKYEQIDLIGKKTKKTAMTVEH--LAIECHWSQR 285

Query: 232 CALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLC--HSLEKQGFSVCAIHGNIDQRSRMKIL 288
            A++  +LQ    +    IIFC  KK    L    S+++   S   +HG+I Q+ R   L
Sbjct: 286 AAVIGDVLQVYSGSHGRTIIFCETKKEATELALNASIKQDAQS---LHGDIPQKQREVTL 342

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             F+ G   ++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G     
Sbjct: 343 KGFRNGAFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGMCICF 402

Query: 349 VAKEDIKHIDAIEK 362
             +++   +  +E+
Sbjct: 403 YQRKEDYQLKQVEQ 416


>gi|293503439|ref|ZP_06667286.1| helicase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291095105|gb|EFE25370.1| helicase [Staphylococcus aureus subsp. aureus 58-424]
          Length = 448

 Score =  216 bits (549), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 126/381 (33%), Positives = 206/381 (54%), Gaps = 13/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ + IP +L+R ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++   + ++ P+ +++ PTRELA Q+ D      +    ++V + IGG   E   ++   
Sbjct: 66  ID---SEIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRCNA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L ++    LVIDEAD M+D+G I  +  I + +      +
Sbjct: 123 QPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNANIV 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+ ++LQ     +L +P+ + V++     + IE   + T     K  A +++ L  
Sbjct: 183 VFSATIPEQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPT-----KGAAKVEKTLNL 237

Query: 242 QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            D +     I+FCN + N  +L  SL + G  V  IHG +  R R + +   +    Q +
Sbjct: 238 IDILNPYLCIVFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYV 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +ASDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  
Sbjct: 298 IASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISL 357

Query: 360 IEK--LIEKKVDWLNGDLSSL 378
           IE    +   VD  +G+L  +
Sbjct: 358 IEDRGFVFNTVDIKDGELKEV 378


>gi|195145352|ref|XP_002013660.1| GL24257 [Drosophila persimilis]
 gi|194102603|gb|EDW24646.1| GL24257 [Drosophila persimilis]
          Length = 703

 Score =  216 bits (549), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 119/347 (34%), Positives = 199/347 (57%), Gaps = 36/347 (10%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG--- 66
           P ++  +   G+ KP+PIQ +  P++L+ HD+ GIAQTGTGKT +F+LP +   E     
Sbjct: 310 PDLLGEIEKQGFPKPSPIQSQAWPILLKGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSIP 369

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +      L+L PTRELA Q+    +KY    ++    + GG     Q   +ERGA+++
Sbjct: 370 RGQRGGANVLVLAPTRELALQIEMEVKKYSFR-DMRAVCVYGGGCRRMQISDVERGAEII 428

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           ICTPGR+ D      + +++I  LV+DEADRMLDMGF P I+ +   +   RQT++ SAT
Sbjct: 429 ICTPGRLNDLVQAKVIDVSSITYLVLDEADRMLDMGFEPQIRKVLMDIRPDRQTIMTSAT 488

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
               +++++++++ NP ++ V +             AT++        ++Q+++      
Sbjct: 489 WPPGVRRLAQSYMNNPIQVCVGSLD---------LAATHS--------VKQVIE------ 525

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
              +  ++ +N + L       GF    IHG+ DQ  R + +++ K G +++++A+D+A+
Sbjct: 526 ---LLEDESENDLTL------DGFMTQCIHGSRDQSDREQAIADIKSGVVRILIATDVAS 576

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + + + + D
Sbjct: 577 RGLDIEDISHVINYDFPRNIEEYVHRVGRTGRAGRTGTSISFITRSD 623


>gi|323355798|gb|EGA87612.1| Fal1p [Saccharomyces cerevisiae VL3]
          Length = 372

 Score =  216 bits (549), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 123/380 (32%), Positives = 208/380 (54%), Gaps = 14/380 (3%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           + L   ++  +   G+  P+ IQ + I  ++   DV   AQ+GTGKTA+F + +L  ++ 
Sbjct: 1   MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAID- 59

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER-GAD 124
              R +  + LIL PTRELA+Q+    +  G   N+    + GG   +   KK+++ G  
Sbjct: 60  --LRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQ 117

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD--MGFIPYIQNITSLVPFTRQTLL 182
            +  TPGR+LD   R  L   N+++LV+DEAD +L   +GF   I +I + +P   Q ++
Sbjct: 118 AVSGTPGRVLDMIKRQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVV 177

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT---YAQYSKKCALLQQLL 239
            SATM  ++ +V+  F+ +P +I V     + E I+   V       ++   C +   L 
Sbjct: 178 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSL- 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN KK V  L   L +  F+V ++HG++ Q  R K++++F+ G  +++
Sbjct: 237 ----TITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVL 292

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   + K D+  +  
Sbjct: 293 ISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLRE 352

Query: 360 IEKLIEKKVDWLNGDLSSLN 379
           IEK    K++ +  + + L+
Sbjct: 353 IEKFYSIKINPMPANFAELS 372


>gi|184200059|ref|YP_001854266.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
 gi|183580289|dbj|BAG28760.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
          Length = 535

 Score =  216 bits (549), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 122/381 (32%), Positives = 196/381 (51%), Gaps = 14/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+   +   +   G  +  PIQ KT+P  L   DV G  +TG+GKT +F LP++  
Sbjct: 5   FEDLGVPEALSADLARVGITEAFPIQEKTLPDSLAGRDVLGRGRTGSGKTVAFALPLVAR 64

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           L        +   R   P  L+L PTRELA Q+        K   L   ++ GG+  + Q
Sbjct: 65  LAGMAPGASRASRRAHRPTGLVLAPTRELATQIDRTVAPLAKAAGLNTTVIFGGVSQKRQ 124

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K L  G D+++  PGR+ D   +G L ++++ + V+DEAD M DMGF+P +  I +  P
Sbjct: 125 EKALADGVDIVVACPGRLEDLIKQGLLTLDDVRVTVLDEADHMADMGFLPVVTRILAKTP 184

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q LLFSAT+ + +  + + FLQ+P     +   +   T++H  + T+A    K AL+
Sbjct: 185 KGSQRLLFSATLDNGVDVLVKKFLQDPVLHSADNAQAAVTTMDHQVLVTHAD--DKQALI 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + L          ++F   K     +   L + G     + GN+ Q +R + L  F +G 
Sbjct: 243 EALASGTGRR---MMFTRTKYRAKKMAKKLSQAGIPAVDLQGNLSQGARDRNLGAFSDGD 299

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARG+ + DV  V + D P   ++Y+HR GRT RAG  G   T+   E+  
Sbjct: 300 VRVLVATDVAARGVHVDDVELVVHIDPPAEHKSYLHRSGRTARAGASGAVITIATTEERS 359

Query: 356 HIDAIEKL--IEKKVDWLNGD 374
            +D + K   ++ +VD +  D
Sbjct: 360 DVDKLMKKAGVKPRVDEVRPD 380


>gi|71904068|ref|YP_280870.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
 gi|71803163|gb|AAX72516.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
          Length = 447

 Score =  216 bits (549), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 205/367 (55%), Gaps = 11/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      V  A+ + G+V PT +Q + IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDYHFKQYVQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKK 118
             L++ +A V++   +I  P+RELA Q+ D  ++  K++   + +A  +GG     Q +K
Sbjct: 61  EKLDEAKAEVQV---VITAPSRELATQIFDACKQIAKHFQEEIRLANYVGGTDKLRQIEK 117

Query: 119 LERGAD--VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           L +G+   ++I TPGRI D    G L ++     V+DEAD  +DMGF+  +  I + +P 
Sbjct: 118 L-KGSQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASLPK 176

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  V+T  +  K   LL+
Sbjct: 177 SVQILVFSATIPQKLQPFLKKYLTNPVIEQIKTKTVIADTIDNWLVSTKGR-DKNGQLLE 235

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L   Q  M   ++F N K+   +L   L   G  V  IHG I  R R +I++  K+   
Sbjct: 236 ILKTMQPYM--AMLFVNTKERADDLHAFLTANGLKVAKIHGGIPPRERKRIMNQVKKLDF 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   
Sbjct: 294 EYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSD 353

Query: 357 IDAIEKL 363
           I  +EK+
Sbjct: 354 IKELEKM 360


>gi|322822482|gb|EFZ28519.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 824

 Score =  216 bits (549), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 129/374 (34%), Positives = 200/374 (53%), Gaps = 13/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL   V+  VL  GY  PTPIQ K IP ++Q  DV  +A+TG+GKTA+F++PML +
Sbjct: 30  FQSFGLDKPVLDGVLRLGYNVPTPIQRKAIPPMIQGSDVVAMARTGSGKTAAFLIPMLNL 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  ++    R L+L PTREL+ Q+     +  K  +L  A L+GG   E Q + L   
Sbjct: 90  L-KSHSKTVGIRGLVLAPTRELSLQILRFGIQLDKFLDLRFAALVGGNSLEQQFELLGSN 148

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+L       L ++ ++ LV+DEADR+ ++G  P I  +   VP   Q  L
Sbjct: 149 PDIVVATPGRLLHIMEEASLKLSMVKCLVLDEADRLFELGLQPQIVAVMQKVPDACQRAL 208

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ-- 240
           FSATM   L + +   L NP  I ++     ++ ++    A   +  +K A L  LL+  
Sbjct: 209 FSATMPSVLAEFTSAGLHNPVVIRLDAEMKLSDKLKQS--AFVVRNDEKVAALIVLLKKV 266

Query: 241 --------SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                   S  T++  +IF   K +V  L   +E    S  A+HG +DQ +R   +  F 
Sbjct: 267 IGVATGDTSDGTVQQALIFVESKFHVDYLQMIMEAYLISCSAVHGQMDQEARRNAVQAFS 326

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                +M+ +D+AARGLD+P + +V NF  P+  + ++HR+GR  RAGR G A++ +  E
Sbjct: 327 RRETHVMIVTDVAARGLDLPLLDNVVNFSFPSTPKLFVHRVGRVARAGRSGAAYSFLTFE 386

Query: 353 DIKHIDAIEKLIEK 366
           D  +   +   I++
Sbjct: 387 DFPYYVDLMAFIDR 400


>gi|2370593|emb|CAA73168.1| translation initiation factor eIF4A II [Xenopus laevis]
          Length = 413

 Score =  216 bits (549), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 203/372 (54%), Gaps = 13/372 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F +   +I
Sbjct: 40  FDDMSLSESLLRGIYAYGFEKPSAIQQRAIMPCIKGYDVIAQAQSGTGKTATFAI---SI 96

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++    ++  + L+L PTRELA Q+       G     +    IGG    A+ +KL+  
Sbjct: 97  LQQIELDMKATQALMLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQSE 156

Query: 123 A-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPFTRQT 180
           A  +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   ++    Q 
Sbjct: 157 APHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKVLSMNAQV 216

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQ 237
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K    C L + 
Sbjct: 217 VLLSATMPADVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYET 276

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L     T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ +
Sbjct: 277 L-----TITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSR 331

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR G  G A  +V ++D + +
Sbjct: 332 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGWKGVAINMVTEDDKRTL 391

Query: 358 DAIEKLIEKKVD 369
             IE      V+
Sbjct: 392 KDIETFYNTTVE 403


>gi|19698881|gb|AAL91176.1| eukaryotic translation initiation factor [Arabidopsis thaliana]
          Length = 412

 Score =  216 bits (549), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 200/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 41  FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    + +    L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 101 LDFSLIQCQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAG 157

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 158 VHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 217

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 218 FSATMPPEALEITRKFMSKPVRILVKRDELTVEGIKQFYVNVEKEEWKLETLCDLYETLA 277

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 278 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 332

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V ++D + +  
Sbjct: 333 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFD 392

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     V+ L  +++ L
Sbjct: 393 IQKFYNVVVEELPSNVADL 411


>gi|195394063|ref|XP_002055665.1| GJ19487 [Drosophila virilis]
 gi|194150175|gb|EDW65866.1| GJ19487 [Drosophila virilis]
          Length = 953

 Score =  216 bits (549), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 205/378 (54%), Gaps = 15/378 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L P ++  +   G+ KPT IQ +  P+ L   D+ GIAQTG+GKT +++LP + 
Sbjct: 238 NFEESSLPPHIIDEMKRQGFTKPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIV 297

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNK 117
            +  +    R   P  L+L PTRELA Q+      YG      +    + GG     Q +
Sbjct: 298 HIGNQPPIMRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQAR 357

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LERG +V+I TPGR++D        +     LV+DEADRMLDMGF P I+ I   +   
Sbjct: 358 DLERGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 417

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKC 232
           RQ +++SAT   E+Q ++ +FL +  +I + + + +A     + +E C      Q  +  
Sbjct: 418 RQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICNENEKPQ--RMV 475

Query: 233 ALLQQLLQSQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            LL+ +  + +   N     IIF   K  V ++   +  +G++  +IHG+  Q  R  +L
Sbjct: 476 RLLKDIAPTTNNAANNGNKIIIFVETKIKVEDILQIIRSEGYTATSIHGDKSQSERDSVL 535

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +F+ G   +++A+D+A+RGLD+ D+  V N+D PN +ENY+HRIGRTGR  + G A+T 
Sbjct: 536 KDFRNGKSNILIATDVASRGLDVEDLQFVINYDYPNSSENYVHRIGRTGRCQQLGTAYTF 595

Query: 349 VAKEDIKHIDAIEKLIEK 366
              ++ K    +  ++E+
Sbjct: 596 FTPDNAKQARELISVLEE 613


>gi|15675529|ref|NP_269703.1| ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS]
 gi|71911177|ref|YP_282727.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
 gi|13622729|gb|AAK34424.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS]
 gi|71853959|gb|AAZ51982.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
          Length = 447

 Score =  216 bits (549), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 130/366 (35%), Positives = 202/366 (55%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      V  A+ + G+V PT +Q + IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDYHFKQYVQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL--LIGGIPFEAQNKK 118
             L++ +A V++   +I  P+RELA Q+ D  ++  K++   + L   +GG     Q +K
Sbjct: 61  EKLDEAKAEVQV---VITAPSRELATQIFDACKQIAKHFQEEIRLANYVGGTDKLRQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+     ++I TPGRI D    G L ++     V+DEAD  +DMGF+  +  I + +P +
Sbjct: 118 LKDSQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASLPKS 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  V+T  +  K   LL+ 
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVIEQIKTKTVIADTIDNWLVSTKGR-DKNGQLLEI 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   Q  M   ++F N K+   +L   L   G  V  IHG I  R R +I++  K+   +
Sbjct: 237 LKTMQPYM--AMLFVNTKERADDLHAFLTANGLKVAKIHGGIPPRERKRIMNQVKKLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 KELEKM 360


>gi|82915217|ref|XP_729012.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485792|gb|EAA20577.1| RNA helicase-1 [Plasmodium yoelii yoelii]
          Length = 654

 Score =  215 bits (548), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 131/358 (36%), Positives = 201/358 (56%), Gaps = 19/358 (5%)

Query: 24  PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-----PRTLIL 78
           PT IQ++ +P +L   D+ GIA TG+GKT  FVLP++    +   R  +     P  LI+
Sbjct: 228 PTQIQMQGLPSILLGRDIIGIAFTGSGKTIVFVLPLIMTCLEAELRCPIEEGEGPLGLII 287

Query: 79  EPTRELAAQVADNFEKYGKNY-------NLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
            P+RELA+Q   N  KY   Y        L    +IGG+    Q  ++++G  +L+ TPG
Sbjct: 288 CPSRELASQ-THNIIKYFCEYLYKDKFPMLKSLCVIGGVSTYEQGNEIKKGVHMLVATPG 346

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+ D  N+ ++ +     L  DEADR++D+GF   I+N        RQTLLFSATM  ++
Sbjct: 347 RLNDMLNKKRMTLEQCRYLCFDEADRLIDLGFEEEIRNTLDNFSSQRQTLLFSATMPRKI 406

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
           Q+ +++ L NP  I +N   + A  ++      Y +   K + L Q+LQ   T    +IF
Sbjct: 407 QEFAKSTLVNP--IIINVGRAGAANLDVIQEVEYVKEEFKLSYLLQVLQK--TGPPVLIF 462

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           C  KK+V ++   L  +G +  AIHG++ Q  R++ ++ F+ G   ++V +D+A++GLD 
Sbjct: 463 CENKKDVDDVHEYLLLKGVNAIAIHGSLGQTERLEAINLFRNGEKDVLVGTDVASKGLDF 522

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK--EDIKHIDAIEKLIEKK 367
           P + HV N+D+P   ENY+HRIGRTGR G+ G A T + K  E+   +D    LIE K
Sbjct: 523 PSIEHVINYDMPKDIENYVHRIGRTGRCGKTGIATTFINKNQEEAILLDLKALLIEAK 580


>gi|226365888|ref|YP_002783671.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
 gi|226244378|dbj|BAH54726.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
          Length = 473

 Score =  215 bits (548), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 195/373 (52%), Gaps = 14/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+   +V A+ D G   P PIQ+ T+P  L   DV G  +TG+GKT +F +PM++ 
Sbjct: 11  FAALGVREPLVKALADKGITSPFPIQVDTLPDTLSGRDVLGRGKTGSGKTLAFSIPMVSR 70

Query: 63  L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L      G+ R   P  LIL PTRELA Q+    E     Y+L V  + GG+    Q   
Sbjct: 71  LAGELSGGKRRPGRPVGLILAPTRELATQITATLEPLAAAYDLRVTTIFGGVSQNRQVNA 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+++  PGR+ D   +  + ++ +EI V+DEAD M D+GF+P +  I +  P   
Sbjct: 131 LKAGVDIVVACPGRLEDLMKQKFVSLDAVEITVLDEADHMADLGFLPVVTRILNATPQQG 190

Query: 179 QTLLFSATMTDELQKVSENFLQNP---KRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
           Q LLFSAT+ + + K+ + FL+N       E N+P   A    H F     +  +K  L+
Sbjct: 191 QRLLFSATLDNGVDKLVKRFLKNEVLHSVDEANSP--VAAMTHHVFDVDGVEAKRK--LV 246

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++L          I+F   K     L   L + G     +HGN+ Q +R + L++F  G 
Sbjct: 247 ERLASGTGRR---ILFMRTKHQARKLARQLTEAGIPSVDLHGNLSQAARDRNLASFSAGE 303

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            +++VA+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   T+V  E  K
Sbjct: 304 ARVLVATDVAARGVHVDDVQLVVHVDPPAEHKAYLHRSGRTARAGSAGDVVTVVLPEQRK 363

Query: 356 HIDAIEKLIEKKV 368
            +  + +    KV
Sbjct: 364 DLAVLMRKAAIKV 376


>gi|325924306|ref|ZP_08185850.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
 gi|325545171|gb|EGD16481.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
          Length = 523

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 119/328 (36%), Positives = 197/328 (60%), Gaps = 10/328 (3%)

Query: 48  GTGKTASFVLPMLTILEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV 103
           GTGKT +F++ ++  L    A    +   PR LIL PTRELA Q+  +  K+G +  L  
Sbjct: 1   GTGKTLAFLVTVVNRLLNRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRF 60

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG 162
           AL+ GG+ ++ Q + L++G DV+I TPGR++D+  + K++ ++  EI V+DEADRM D+G
Sbjct: 61  ALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLG 120

Query: 163 FIPYIQNITSLVP--FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
           FI  I+ +   +P   TRQTLLFSAT++  + +++   +  P+++ V T + TA  +   
Sbjct: 121 FIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQR 180

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
               +    +K  LL  LL   +  +  ++F N K  V  +  +LE+ G+ V  + G++ 
Sbjct: 181 IY--FPSDEEKQTLLLGLLSRSEGART-MVFVNTKAFVERVARTLERHGYRVGVLSGDVP 237

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q+ R  +L+ F++G ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G
Sbjct: 238 QKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLG 297

Query: 341 RHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
             G A +   +     +  IE  I +K+
Sbjct: 298 EEGDAISFACERYAMSLPDIEAYIAQKI 325


>gi|297741203|emb|CBI32154.3| unnamed protein product [Vitis vinifera]
          Length = 401

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 119/290 (41%), Positives = 166/290 (57%), Gaps = 16/290 (5%)

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
           +R   P  LIL PTREL+ Q+ D  +K+     + V +  GG P   Q + LERG D+L+
Sbjct: 12  SRTAYPLALILSPTRELSCQIHDEAKKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILV 71

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLF 183
            TPGR++D   R ++ +  ++ L +DEADRMLDMGF P I+ I   +       RQT+LF
Sbjct: 72  ATPGRLVDLLERARISLQMVQYLALDEADRMLDMGFEPQIRRIVEQMDMPPRGVRQTMLF 131

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT   E+Q+++ +FL N   + V    S+ + I       + Q S K + L  LL +Q 
Sbjct: 132 SATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQR--VEFVQESDKRSHLMDLLHAQ- 188

Query: 244 TMKNG--------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +NG        ++F   KK    L H L   GF   +IHG+  Q+ R   L  FK G 
Sbjct: 189 -RENGTHGKQALTLVFVETKKGADALEHWLCINGFPATSIHGDRSQQEREHALRLFKSGA 247

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G A
Sbjct: 248 TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLA 297


>gi|262166586|ref|ZP_06034323.1| ATP-dependent RNA helicase DbpA [Vibrio mimicus VM223]
 gi|262026302|gb|EEY44970.1| ATP-dependent RNA helicase DbpA [Vibrio mimicus VM223]
          Length = 388

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 114/297 (38%), Positives = 182/297 (61%), Gaps = 4/297 (1%)

Query: 74  RTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
           + L+L PTRELA QVA +    G+  +N+ V  L GG+P   Q   LE GA +L+ TPGR
Sbjct: 2   QALVLCPTRELADQVATDIRTLGRTIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPGR 61

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           ILDH ++ ++ ++ +  LV+DEADRML+MGF   ++ I +  P  RQTLLFSAT    ++
Sbjct: 62  ILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTLLFSATYPASIE 121

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           +++++  +N   I+V     T+ +I   F       ++  AL   LL  Q T  + ++FC
Sbjct: 122 QIAQSVTRNAMMIKVAATHDTS-SIRQYFYKVDGSTARDEALETLLLHHQPT--SSVVFC 178

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
           N K+ V N+  +L + GFSV  +HG+++QR R + L  F   +I ++VA+D+AARGLD+ 
Sbjct: 179 NTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVD 238

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           ++  VFN+D+    E ++HRIGRTGRAG  G AF+  +  +   +  I++ ++  ++
Sbjct: 239 NLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIAIE 295


>gi|94988990|ref|YP_597091.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94990990|ref|YP_599090.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270]
 gi|94992883|ref|YP_600982.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
 gi|94542498|gb|ABF32547.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94544498|gb|ABF34546.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270]
 gi|94546391|gb|ABF36438.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
          Length = 447

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 204/367 (55%), Gaps = 11/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      V  A+ + G+V PT +Q + IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDYHFKQYVQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL--LIGGIPFEAQNKK 118
             L++ +A V++   +I  P+RELA Q+ D  ++  K++   + L   +GG     Q +K
Sbjct: 61  EKLDEAKAEVQV---VITAPSRELATQIFDACKQIAKHFQEEIRLANYVGGTDKLRQIEK 117

Query: 119 LERGAD--VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           L +G+   ++I TPGRI D    G L ++     V+DEAD  +DMGF+  +  I + +P 
Sbjct: 118 L-KGSQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASLPK 176

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  V+T  +  K   LL+
Sbjct: 177 SVQILVFSATIPQKLQPFLKKYLTNPVIEQIKTKTVIADTIDNWLVSTKGR-DKNGQLLE 235

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L   Q  M   ++F N K+   +L   L   G  V  IHG I  R R +I++  K+   
Sbjct: 236 ILKTMQPYM--AMLFVNTKERADDLHAFLTANGLKVAKIHGGIPPRERKRIMNQVKKLDF 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   
Sbjct: 294 EYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSD 353

Query: 357 IDAIEKL 363
           I  +EK+
Sbjct: 354 IKELEKM 360


>gi|255072735|ref|XP_002500042.1| predicted protein [Micromonas sp. RCC299]
 gi|226515304|gb|ACO61300.1| predicted protein [Micromonas sp. RCC299]
          Length = 523

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 198/353 (56%), Gaps = 3/353 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + + P+V  A+   GY  PTPIQ K IP+ L   DV  +A+TG+GKTA+F++P+L  
Sbjct: 73  FESMDILPEVFRAIKRKGYRIPTPIQRKAIPVALSGADVVAMARTGSGKTAAFLIPVLHK 132

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +   +    R ++L PTRELA Q     ++  K  +L    ++GG   EAQ   L   
Sbjct: 133 LRQHSLKAGA-RAVVLSPTRELALQTYKFAQELSKFTDLRCVCVVGGDSMEAQFDDLASN 191

Query: 123 ADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D+L+ TPGR+L H        + ++  +V+DEADR+L+MGF   +++I   V   RQ L
Sbjct: 192 PDLLVATPGRLLHHVEEISGFSIRSVSHVVLDEADRLLEMGFADQLRDIMKQVADQRQCL 251

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   L +     L++P+ I ++     +  ++  F     Q  K  +LL  L + 
Sbjct: 252 LFSATMPSALAEFVRVGLKDPQVIRLDAEMKVSPDLKLSFT-VMRQDEKIPSLLFFLREV 310

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  ++F   + +V  L   LE +G +V A++G++D  +R   +  F+     +MV 
Sbjct: 311 VPENQQTVVFTATRHHVELLVTVLESEGITVSAVYGSMDMAARKLHIGKFRNRKTSVMVV 370

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           +D+AARG+DIP + +V NFD P R + ++HR+GR  RAGR G A +L+ KE++
Sbjct: 371 TDVAARGIDIPLLDNVVNFDFPPRPKLFVHRVGRVARAGRTGVAHSLLVKEEM 423


>gi|170090862|ref|XP_001876653.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648146|gb|EDR12389.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 422

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 127/382 (33%), Positives = 206/382 (53%), Gaps = 18/382 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+S  +  A+       PT +Q   IP +L   D  G A+TG+GKT +F LP   I
Sbjct: 2   FASLGISDSLQSALTSMSIKTPTEVQAACIPPLLAGTDCIGNAKTGSGKTIAFALP---I 58

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++  A       L+L PTRELA Q+++ F   G + NL  A+++GG+   AQ  +L   
Sbjct: 59  LQRLLADPYGIYALVLTPTRELAFQISEQFVVLGASLNLRTAVIVGGMDMMAQALELGNR 118

Query: 123 ADVLICTPGRILDHF--NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++I TPGR++DH   + G+  ++ +  LV+DEADR+L   F P + ++ +++P  RQT
Sbjct: 119 PHIVIATPGRLVDHLRSSSGEWDLSRVRFLVLDEADRLLTRTFSPELSHLFNVLPQDRQT 178

Query: 181 LLFSATMTDELQKVSEN---------FLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSK 230
            LF+AT+T  ++ +++          F+      +V    + +   +H   V ++ + + 
Sbjct: 179 CLFTATLTPSIESLADATARPGKQKPFVHRMNERQVRRIETVSTLKQHYILVPSHVRETY 238

Query: 231 KCALLQQLLQSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
              LL+      D ++     IIFC + +    L   L+       A+H  + QR R+  
Sbjct: 239 LYYLLRNPPDDDDELEQPPPTIIFCARPRTAAYLTLVLKSLSIRSTALHSRLTQRERLSS 298

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           LS F+   + ++V++D+ +RGLDI DV  V N+D+P  AE Y HR+GRT RAGR G A +
Sbjct: 299 LSLFRASVVPVLVSTDVGSRGLDIEDVAMVINWDMPEEAEEYTHRVGRTARAGRGGVAIS 358

Query: 348 LVAKEDIKHIDAIEKLIEKKVD 369
            V + D   +  IEK I+ K++
Sbjct: 359 FVTERDEDRVVKIEKRIKTKLE 380


>gi|58263430|ref|XP_569125.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108386|ref|XP_777144.1| hypothetical protein CNBB3750 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687070|sp|Q5KME7|PRP5_CRYNE RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|50259829|gb|EAL22497.1| hypothetical protein CNBB3750 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223775|gb|AAW41818.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1072

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 125/388 (32%), Positives = 208/388 (53%), Gaps = 11/388 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++   GL    +  +   G+  PT IQ + IP ++   DV GIA+TG+GKT +F+LPML 
Sbjct: 404 NWGAFGLPQGCLDVIKHQGWETPTSIQAQAIPAIMSGRDVIGIAKTGSGKTVAFLLPMLR 463

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R  +    P  +++ PTRELA+Q+    + + K  N+  +  +GG         +
Sbjct: 464 HVRDQRPVSGSEGPIAVVMSPTRELASQIYKECQPFLKVLNIRASCCVGGSSISEDIAAM 523

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIE---ILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++GA+V+ICTPGR++D        + N+     +V+DEADRM DMGF P +  I + V  
Sbjct: 524 KKGAEVVICTPGRMIDLLTANNGRVTNVRRTTYIVMDEADRMFDMGFEPQVMKIINNVRP 583

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + Q +LFSAT    ++ ++   L  P  I V   S  A  I+   V      +K   LL+
Sbjct: 584 SAQKVLFSATFPKTMESLARRILVKPLEITVGGRSVVAPEIDQ-RVEVRDGDTKFTRLLE 642

Query: 237 QLLQSQDTMKN-----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
            L +  +  K+      +IF +++++  +L   L ++G+   ++HG  +Q  R + + NF
Sbjct: 643 ILGEMGEEHKDEDDFRTLIFVDRQESADDLFRELLQRGYVCASLHGGKEQVDRDEAIKNF 702

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G + ++VA+ +AARGLD+ ++  V N+D PN  E+Y+HR GRTGRAG  G   T +  
Sbjct: 703 KNGDVPIIVATSVAARGLDVKELKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCITFITP 762

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           E  +    I + +E    ++  DL  ++
Sbjct: 763 EQERFSVDIVRALEASKAFIPDDLKKMS 790


>gi|330846058|ref|XP_003294872.1| hypothetical protein DICPUDRAFT_93301 [Dictyostelium purpureum]
 gi|325074579|gb|EGC28605.1| hypothetical protein DICPUDRAFT_93301 [Dictyostelium purpureum]
          Length = 413

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 192/361 (53%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DL L   ++  + + GYV+P+PIQ K IP+ L   D+   A+ GTGKTASF++P L 
Sbjct: 40  EFDDLHLKRDLLRGIFEKGYVRPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIPAL- 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             EK      + + LIL PTRELA Q +   ++ GK  N+ V    GG   +    +L  
Sbjct: 99  --EKTDPTKDVIQVLILVPTRELALQTSQVCKELGKYMNVQVMASTGGTSLKDDIMRLYS 156

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD   +    ++N + +++DEAD++L   F P ++ + + +P  RQ L
Sbjct: 157 PVHILVATPGRVLDLAQKNVANLSNCQTMIMDEADKLLSQEFQPLVEQLINFLPPQRQIL 216

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++   E +LQ    I +    +     ++     + +  +K   L  L  S
Sbjct: 217 LFSATFPVTVKSFKEQYLQQAFEINLMEELTLKGVTQY---YAFVEERQKIHCLNTLF-S 272

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 273 KLQINQSIIFCNSVNRVELLAKKITELGYSCFFIHAKMVQAHRNRVFHDFRNGACRNLVS 332

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI DV  V NFD P  +E Y+HRIGR+GR G  G A  L+  ED   +  IE
Sbjct: 333 SDLFTRGIDIQDVNVVINFDFPKHSETYLHRIGRSGRFGHLGLAINLITYEDRFSLYKIE 392

Query: 362 K 362
           +
Sbjct: 393 Q 393


>gi|239996465|ref|ZP_04716989.1| ATP-dependent RNA helicase, DEAD box family protein [Alteromonas
           macleodii ATCC 27126]
          Length = 441

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 128/365 (35%), Positives = 199/365 (54%), Gaps = 7/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M   DL +  K++  +        T IQ +T+   +Q  D+   ++TG+GKT +F++P +
Sbjct: 1   MLVTDLPVHHKIISKLETKNISTLTEIQERTMLPAIQGKDIIASSKTGSGKTFAFLVPAI 60

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L   +A  R  PR LIL PTRELA QV    +      NLT +L++GG  +  Q K L
Sbjct: 61  NRLMSQKALSRQDPRALILAPTRELAKQVFIEAKSMCTGLNLTCSLIVGGENYNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TR 178
            R   +++ T GR+ DH     + +N +E+L+ DEADRMLD+GF   ++ I        R
Sbjct: 121 RRNPHIIVGTAGRVADHLLDKSVYLNGLELLIFDEADRMLDLGFSAQLKMINDYADHRKR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQ 236
           QT+LFSAT+ + EL+ ++    +   R+ V   ++    IE  CF A       K  +LQ
Sbjct: 181 QTMLFSATLDNIELKHMTTQLTKGAVRVAVGDSTAEHGDIEQKCFFAD--NVDNKDQILQ 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L ++ T    I+F   +++   +   L +Q     A+ G++ Q  R  ++S F  G  
Sbjct: 239 FELANR-TYNQAIVFTATREDTDRIAALLNEQNLEAIALRGDMLQSQRAAVMSAFARGQH 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++V +DLA+RGLD+  VG V NFD+P  A+ YIHRIGRTGRAG+ G+AF+L+   D   
Sbjct: 298 SILVTTDLASRGLDLSKVGLVVNFDLPKNADEYIHRIGRTGRAGQKGEAFSLIGPRDWNS 357

Query: 357 IDAIE 361
            + ++
Sbjct: 358 FEGLK 362


>gi|56421010|ref|YP_148328.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
 gi|56380852|dbj|BAD76760.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
          Length = 436

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 133/384 (34%), Positives = 207/384 (53%), Gaps = 12/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ A+    + KPT IQ + IP  L+   + G +QTGTGKT +++LP++  
Sbjct: 6   FTRFSFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIIEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           ++  RA V+    +I  PTRELA Q+     K  K    +  +    LIGG   +   +K
Sbjct: 66  IKPERAEVQ---AVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L     ++I TPGRI D      L ++   ILV+DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+   + +++NP  + V+   +  + IEH  +    +  +K  LL+ +
Sbjct: 183 QMLVFSATIPEKLKPFLKKYMENPTFVHVDPKRTANQNIEHVLIPLRGR--EKTKLLRDV 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S +     I+F N +K    +   L +QG  V  +HG++  R R K+++  ++   Q 
Sbjct: 241 LLSYNPYL-AIVFVNTRKMADEVADRLAEQGLKVGVLHGDLTPRERRKMMNLIRDLEFQY 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N+++P+  + YIHR GRT RAG  G A T+    D   I 
Sbjct: 300 VVATDLAARGIDIEGVSHVINYELPDDLQFYIHRAGRTARAGYSGIAATIYEPSDQDAIA 359

Query: 359 AIEKLIEKKV--DWLNGDLSSLNP 380
            +EK+    V  D + G+   L P
Sbjct: 360 RLEKMGISFVHRDLVRGEWKELPP 383


>gi|256826013|ref|YP_003149973.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
 gi|256689406|gb|ACV07208.1| DNA/RNA helicase, superfamily II [Kytococcus sedentarius DSM 20547]
          Length = 573

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 122/354 (34%), Positives = 187/354 (52%), Gaps = 9/354 (2%)

Query: 2   DFADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +FADLG+ P  + +VL+ +G   PTPIQ  T+P  L   DV G  +TG+GKT +F +P++
Sbjct: 4   NFADLGV-PTSLTSVLERSGITTPTPIQTATLPDSLAGRDVLGRGRTGSGKTLAFGVPLV 62

Query: 61  TILEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L   R R     PR+LIL PTREL  Q+            L+   + GG+    Q   
Sbjct: 63  ARLAADRRRPASGRPRSLILAPTRELVLQIERAIAPLAAAEGLSTTTIFGGVGQNPQVNA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+++  PGR+ D   +G   + + +I+++DEAD M D+GF+P ++ + S  P   
Sbjct: 123 LRKGVDIVLACPGRLEDLIGQGHCDLRDAQIVILDEADHMADLGFLPGVKRLLSATPRDG 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT+   ++ + + FL NP   E ++  S   T+ H  +        K ++L+ L
Sbjct: 183 QKLLFSATLDGGIKVIVDRFLNNPVTHEADSAQSPVATMTHHVL--EVDKDSKLSVLRDL 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +       ++F   K     L   L   G     +HGN+ Q +R + L+ F EGT Q 
Sbjct: 241 AAAPGRT---VVFTRTKYGAKKLAKQLTANGVPSVDLHGNLSQNARQRNLAAFSEGTAQT 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +VA+D+AARG+ + D+  V + D P   + Y+HR GRT RAG  G   T+   E
Sbjct: 298 LVATDIAARGIHVDDIALVVHADPPAEHKAYLHRSGRTARAGAEGTVVTIAMPE 351


>gi|73969115|ref|XP_860773.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 13 [Canis
           familiaris]
          Length = 624

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 128/381 (33%), Positives = 202/381 (53%), Gaps = 46/381 (12%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------I 62
           P+ V  VL D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +        
Sbjct: 100 PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY 159

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+G      P  L+L PTRELA QV    + YG                          
Sbjct: 160 LERGDG----PICLVLAPTRELAQQVQQVADDYG-------------------------- 189

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL+
Sbjct: 190 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 249

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQ 237
           +SAT   E+++++E+FL++  +I V     +A     + ++ C  +   +  K   L+++
Sbjct: 250 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESE--KDHKLIQLMEE 307

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  ++     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   
Sbjct: 308 IMAEKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAP 365

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K  
Sbjct: 366 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 425

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K++E+    +N  L  L
Sbjct: 426 RELIKVLEEANQAINPKLMQL 446


>gi|332993053|gb|AEF03108.1| ATP-dependent RNA helicase, DEAD box family protein [Alteromonas
           sp. SN2]
          Length = 466

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 127/365 (34%), Positives = 197/365 (53%), Gaps = 7/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M   DL +  K++  +    + + T IQ K++   +Q  D+   ++TG+GKT +F++P +
Sbjct: 1   MLVTDLPVHHKIITKLESRNFTELTEIQEKSMLPAIQGKDIIASSKTGSGKTLAFLIPAI 60

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   +A  R  PR LIL PTRELA QV    +      NL+  L++GG  +  Q K L
Sbjct: 61  NRMMSQKALSRQDPRALILAPTRELAKQVFIEAKTMCTGLNLSCTLVVGGENYNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TR 178
            R   +++ T GR+ DH     + +N +E+L+ DEADRMLD+GF   +  I        R
Sbjct: 121 RRNPHIIVGTAGRVADHLKDKSIFLNGLELLIFDEADRMLDLGFSEQLNMINEFANHRKR 180

Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           QT+LFSAT+   EL  ++    +   R+ V ++ +   +  + CF A   ++  K ALL 
Sbjct: 181 QTMLFSATLDSIELNYMTARLTKAAVRVSVGDSTAHHGDIQQQCFFADNIEH--KDALLH 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             + S  T    I+F   +++   L   L K      A+ G++ Q  R  I+S F  G  
Sbjct: 239 HEI-SNRTYNQAIVFTATREDTDRLTTMLNKDKLEAIALRGDLPQNQRAAIMSEFARGQH 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++V +D+A+RGLD+  VG V NFD+P  A+ YIHRIGRTGRAG+ G+A + V   D K 
Sbjct: 298 SVLVTTDVASRGLDLSKVGLVINFDLPKNADEYIHRIGRTGRAGQKGEAASFVGPRDWKS 357

Query: 357 IDAIE 361
             A++
Sbjct: 358 FIALK 362


>gi|198433176|ref|XP_002130371.1| PREDICTED: similar to ATP-dependent RNA helicase [Ciona
           intestinalis]
          Length = 816

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 117/355 (32%), Positives = 201/355 (56%), Gaps = 2/355 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   V+  GY  PTPIQ K IPL+L   DV  +A+TG+GKTA+F++PM   
Sbjct: 70  FQSMGLSHSVFKGVIRKGYKVPTPIQRKCIPLILSDKDVVAMARTGSGKTAAFLIPMFEK 129

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  ++     R L+L PTRELA Q     ++ G+  +L  A ++GG   + Q   +   
Sbjct: 130 LQGAQSGA-GARALLLSPTRELALQTLKFVKELGRFTSLRTACILGGDSMDEQFSAMHEN 188

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV I TPGR++      +L ++NI  +V DEADR+ ++GF   +  +   +P  RQTLL
Sbjct: 189 PDVTIATPGRLMHVLIEMELRLSNIHYVVFDEADRLFELGFQEQLHEVLHRLPDDRQTLL 248

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +L + ++  L +P  + ++  S  ++ ++  F+    +  K  AL+  L    
Sbjct: 249 FSATLPKQLVEFAKAGLNDPTLVRLDLDSKLSDQLKLAFLH-LREDDKLPALIHLLRNVF 307

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  ++F + K +V  +   L+    +   ++ ++D  +R   ++ F+     +++ +
Sbjct: 308 KETEQTVVFVSTKHHVEFVKDVLKLFSINCSYVYSSLDHTARKINIAKFRNKKTMVLIVT 367

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           D+AARGLDIP + +V NF  P +++ ++HR+GR  RAGR G A++LV  E++ ++
Sbjct: 368 DVAARGLDIPMLDNVINFSFPAKSKLFVHRVGRVARAGRTGTAYSLVCPEELAYV 422


>gi|160876637|ref|YP_001555953.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|160862159|gb|ABX50693.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315268836|gb|ADT95689.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 443

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 149/431 (34%), Positives = 224/431 (51%), Gaps = 20/431 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF----- 55
           + FA+LGL+  ++ A L A    PT +Q   IP +L   D+  +AQTG+GKT +F     
Sbjct: 13  LTFAELGLNSALLKA-LPASLKHPTKVQQLAIPAILAGRDLLALAQTGSGKTLAFGLPLL 71

Query: 56  --VLPMLTILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGG 109
             +L       +G   V+      L+L PTRELA QV +  +      + +L + LL GG
Sbjct: 72  QQLLLQQQTQLQGAKSVQALNALALVLVPTRELALQVTEALQAVASQLSASLNIQLLCGG 131

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +P E Q  +L     VL+ TPGR+LD   +  + +++I+ LV+DEADR+L+MGF P +Q 
Sbjct: 132 VPLEDQLAELTAKPQVLVATPGRLLDLCKQSHISLDSIKHLVLDEADRLLEMGFWPDVQK 191

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQN-PKRIEVNTPSSTAETIEHCFVATYAQY 228
           + + +P  +QT LFSAT+ + L  ++   L N P R+E +  +S A  IE        + 
Sbjct: 192 LMAFMPKLKQTSLFSATLPEALDTLAGKLLVNEPLRVEAHKVNSVAGEIEEQLYLVN-KG 250

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           SK   L+  L Q Q      ++F + + +   +   L K G  V A+HG  DQ  R + L
Sbjct: 251 SKAQVLIALLKQYQ--WPQVLVFISARDDADAVAKRLAKAGMKVAALHGEKDQTVRSQTL 308

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           ++FK   IQ++VA+DL ARG+ +  +  V N D+P  A  Y+HRIGRT RAG  G A +L
Sbjct: 309 ADFKANRIQVLVATDLMARGIHVDALPVVINLDLPMSAPVYVHRIGRTARAGEKGLAISL 368

Query: 349 VAKEDIKHIDAIEKLIEKKVDW-LNGDLSSLNPPLE-KIDIAQHNHARKNNPIPQKSTGF 406
           V   ++  + AI  L  +++   L  D    + P E   D A      +  P   K    
Sbjct: 369 VCHGEMATLTAIRSLTARELPLALLADFPVTDKPSENTTDGAADGKVERKRPPRDKQA-- 426

Query: 407 DRRKKNYSSQK 417
           +RR  N  S K
Sbjct: 427 NRRSINKHSAK 437


>gi|19113586|ref|NP_596794.1| ATP-dependent RNA helicase Dbp8 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|74654494|sp|Q9HGM5|DBP8_SCHPO RecName: Full=ATP-dependent RNA helicase dbp8
 gi|9929273|emb|CAC05248.1| ATP-dependent RNA helicase Dbp8 (predicted) [Schizosaccharomyces
           pombe]
          Length = 453

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 142/426 (33%), Positives = 231/426 (54%), Gaps = 19/426 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLG+SP ++  +      +PT IQ   I  +L+  +  G A+TG+GKTA+F LP   I
Sbjct: 9   FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALP---I 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +EK          LIL PTRELA Q+ + F   G N NL  AL++GG+    Q+  L + 
Sbjct: 66  IEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKR 125

Query: 123 ADVLICTPGRILD--HFNRGKLL--MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
             V++ TPGR+ D    N  + +  +  I+ LV+DEADR+L   F   + +  S++P + 
Sbjct: 126 PHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASE 185

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPK----RIEVNTPS-STAETIEHCFVATYAQYSKK 231
            RQTLLF+AT+TD ++++     +N K      EV T + S   T++  ++   +Q  ++
Sbjct: 186 DRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQV-RE 244

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L+  L   ++  K+ IIF N+ +    +   L      V  +H  + QR R+  L  F
Sbjct: 245 AYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRF 304

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +    +++VA+D+A+RGLDIP V  V NFD+P   ++YIHR+GRT RAGR G++ ++V +
Sbjct: 305 RAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTE 364

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            D+  + AIE  +  K+     +  S N  LE   I +   A++   +     GF  R++
Sbjct: 365 RDVDLVHAIEDRVGTKLS--EYEHVSENKMLEY--IKEVTDAKRQASLEMIDRGFGERRQ 420

Query: 412 NYSSQK 417
             + ++
Sbjct: 421 KRNEKR 426


>gi|294337058|emb|CAX65669.1| vasa-like protein [Isodiametra pulchra pulchra]
          Length = 574

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 130/344 (37%), Positives = 190/344 (55%), Gaps = 11/344 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRA-----R 69
           V  +GY KPTPIQ   IP V Q  D+   AQTG+GKTA+F+LP++  I+E+ R       
Sbjct: 132 VQRSGYNKPTPIQKYAIPAVRQGRDIMACAQTGSGKTAAFLLPVIAGIMEENRPASEYDS 191

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           V+ P  +I+ PTRELA Q+    +K      L   ++ GG+       ++ RG ++L+ T
Sbjct: 192 VQEPSAVIIAPTRELAVQIDREAKKLIHGSILKSVVIYGGVSVAHHASQVARGCNILVAT 251

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTRQTLLFSATM 187
           PGR+      GK+ +   + LV+DEADRML+ GF   ++   S++P    RQTLLFSAT 
Sbjct: 252 PGRLKGFIEMGKISLKKAKFLVLDEADRMLEEGFEAEVRRAASMMPPNTLRQTLLFSATF 311

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ-DTMK 246
             E+Q ++   L N   + +      A   +   +     +++K   L++L  S+ DT +
Sbjct: 312 PTEVQDLARTLL-NEDYLFITVGELGAGNADVTHLIFNVPHTEKIGKLKELFSSRIDTSR 370

Query: 247 N-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F   KK    L   L + G+   +IHG+ +QR R + L  FK G   ++VA+ +A
Sbjct: 371 QKSIVFVEMKKRCDFLAVQLCQAGYQSTSIHGDREQREREEALRQFKSGQCNILVATAVA 430

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ARGLDIP V  V NFD+P   E + HR GRTGR G  G A TL+
Sbjct: 431 ARGLDIPKVMFVVNFDMPKTIEEFTHRCGRTGRVGFKGDAITLL 474


>gi|294944705|ref|XP_002784389.1| ATP-dependent RNA helicase DRS1, putative [Perkinsus marinus ATCC
           50983]
 gi|239897423|gb|EER16185.1| ATP-dependent RNA helicase DRS1, putative [Perkinsus marinus ATCC
           50983]
          Length = 720

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 129/378 (34%), Positives = 202/378 (53%), Gaps = 20/378 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A L LS  V+  +   G+ +PTP+Q   IP+ L+  D+  +A+TG+GKT  F+LP++  
Sbjct: 135 WASLQLSRPVLRGLNALGFAEPTPVQRDVIPVALRSQDILAMAETGSGKTGGFLLPIVER 194

Query: 63  LEKG---RARVRMPRT------------LILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
           L +    R+R + P T            L+L PTRELA Q       + K   LT  L++
Sbjct: 195 LCQASHVRSRRKDPHTGRITGGRAATKALVLLPTRELAVQCYKMLRDFTKFAPLTSCLVV 254

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFI-P 165
           GG   + Q  ++    DV++ TPGR+LD   N   + +   EI+V+DE DR+L+MGF   
Sbjct: 255 GGFDAQKQASEMRAQPDVVLATPGRVLDLLLNSPNIHLEMCEIVVLDECDRLLEMGFRDE 314

Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
            +  I      +RQT++FSATM  E+ K+++  L  P  IE    +  + T+   F+   
Sbjct: 315 CLTIIQKHCNRSRQTMMFSATMNQEVLKLAKVVLSKPVTIETTKANRVSPTLTQEFIRVT 374

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG-FSVCAIHGNIDQRSR 284
           ++  ++  LL     ++   K  +IFC QKK    +   L   G      +HGN+ Q+ R
Sbjct: 375 SEQQREATLLAAC--TKHFTKRCLIFCAQKKTAHRMAVLLGLVGKVKFAELHGNLSQQQR 432

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
           +K L++F+ G    ++ +DLAARGLD+P V  V NF++P     Y+HR+GRT RAG  G 
Sbjct: 433 VKALADFESGKATHLICTDLAARGLDLPHVETVINFELPPDVTKYVHRVGRTARAGASGT 492

Query: 345 AFTLVAKEDIKHIDAIEK 362
           + T+    + K +  I K
Sbjct: 493 SVTMYTPGEYKQVKHIAK 510


>gi|123509953|ref|XP_001329985.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121913036|gb|EAY17850.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 402

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 131/388 (33%), Positives = 209/388 (53%), Gaps = 19/388 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  LG+ P ++ AV   G+ KPTPIQ KTI   +   DV G A+TG+GKT +F++P+L
Sbjct: 1   MDFQALGVHPDIIAAVESMGWSKPTPIQEKTIKQAIAGEDVSGAAETGSGKTGAFLIPLL 60

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +LEK R        +IL PTREL  Q+A+  +      N+T+  + GG+    Q  +L
Sbjct: 61  HQLLEKDRPE---KYGIILAPTRELVIQIAEVAQLMSAKLNITIVPIYGGVDDVEQMAQL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +++ TPGR+       K   +  + ++VIDEAD+M  + F   I  ITS    T 
Sbjct: 118 AKRPHIIVATPGRLAQLIRDAKGFDLKPVRVIVIDEADKMAAVEFFDDISVITSNCAKTH 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSATM  +L+K +  + +    +E+ +     + ++   + +    S+K A L  L
Sbjct: 178 QIMLFSATMPKDLEKFTALYSKKASIVELTSEKQVPQALQEYMLTS--PKSQKEATLVAL 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   +T +  IIF +  +    L  +LEK  F+V +  G + Q  R + +  F+E  I++
Sbjct: 236 LHHFETSQI-IIFVSGVREATILTMTLEKMNFAVGSATGGMSQFDREEQVQKFRENKIRI 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+ +  RG+DIP++  V N+D+P+  + YIHR GR GRA + G A T V  E ++   
Sbjct: 295 LVATKVVGRGVDIPNIDVVVNYDLPDNGKEYIHRAGRAGRALKSGIAITFVTMESLQKYQ 354

Query: 359 AIEKLI-----------EKKVDWLNGDL 375
            +EK +           EKK+  ++ DL
Sbjct: 355 DLEKYLKRELPKFEFDKEKKIQEISKDL 382


>gi|38233802|ref|NP_939569.1| putative RNA helicase [Corynebacterium diphtheriae NCTC 13129]
 gi|38200063|emb|CAE49739.1| Putative RNA helicase [Corynebacterium diphtheriae]
          Length = 452

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 139/420 (33%), Positives = 217/420 (51%), Gaps = 7/420 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   +V  +   G V P PIQ   IP  +   D+ G   TG+GKT +F LPM+  
Sbjct: 4   FLDLGLPSGIVQVLSRLGIVDPFPIQEAAIPDAISGRDILGRGPTGSGKTFTFGLPMIVR 63

Query: 63  L-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L E G ++   PR LIL PTRELAAQV +  E+      L V  ++GG+  +     L  
Sbjct: 64  LQESGVSKPSKPRGLILVPTRELAAQVRERLEEPASAMGLRVLEVVGGVSIKRHITSLAS 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+L+ TPGR  D  N+GKL ++ +EI  +DEAD+M DMGF+P +  +  L P T Q L
Sbjct: 124 PVDILVATPGRAQDLINQGKLSLSEVEISTLDEADQMADMGFLPQVTKLLELTPKTAQRL 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT+  ++ K+ + F+ +P         +T ET+ H +         + ++++++   
Sbjct: 184 FFSATLDGDVNKLVDRFMSDPVTHSTTAVKATVETMSH-YRFHVGDREARNSIVEKIAGR 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K  V      L + G +   +HG+    +R   L+ F +G++ ++VA
Sbjct: 243 DGKT---IMFMRTKHGVDRQVKKLRRIGINAAGLHGDKGHNTRAAALAGFADGSVPVLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI DV  V + D P   + Y+HR GRT RAG  GK  TLV     + +D + 
Sbjct: 300 TDIAARGIDIDDVDLVVHVDPPAAHKAYVHRAGRTARAGTVGKVVTLVMDNQREEVDKL- 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
            L +  V  +  D+ + +  L  I  A+  + +   P   +     R KK  ++ +++ P
Sbjct: 359 -LGKAGVSPVIVDVHADSAELTNITGARKRNGKALQPFGAQQKTSQRGKKQETTAQANQP 417


>gi|239981277|ref|ZP_04703801.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291453134|ref|ZP_06592524.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291356083|gb|EFE82985.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
          Length = 503

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 122/350 (34%), Positives = 183/350 (52%), Gaps = 5/350 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   ++  +   G  +P PIQ  T+P  L   D+ G  +TG+GKT +F L +L  
Sbjct: 78  FDQLGLPAPLLACLTAQGVTEPFPIQAATLPNSLAGRDILGRGRTGSGKTLAFGLALLAR 137

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE  RA  R P  L+L PTRELA QV +    Y +   L +  ++GG+    Q   L  G
Sbjct: 138 LEGRRAEPRSPLGLVLVPTRELAQQVTEALTPYARALRLRMTTVVGGLSLGRQASALRGG 197

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D  +RG   ++ +   V+DEAD+M DMGF+P +  +   V    Q LL
Sbjct: 198 AEVVVATPGRLKDLIDRGDCRLDQVGATVLDEADQMADMGFMPQVTELLDQVRPGGQRLL 257

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  +    T+EH     +     K AL  ++    
Sbjct: 258 FSATLDRNVDLLVRRYLDDPTVHSVDPSAGAVTTMEHHLFQVHG--PDKHALATEIAARD 315

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F + K  V  L   L + G    A+HG   Q  R + L+ F++G +  +VA+
Sbjct: 316 GRV---ILFLDTKHAVDRLAEHLLRNGVRAAALHGGRSQAQRTRTLTQFRDGHVTALVAT 372

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           ++AARG+ + D+  V N D P   ++Y+HR GRT RAG  G   TLV  E
Sbjct: 373 NVAARGIHVDDLDLVVNVDPPADHKDYLHRGGRTARAGASGSVVTLVLPE 422


>gi|317128337|ref|YP_004094619.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315473285|gb|ADU29888.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 442

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 121/368 (32%), Positives = 196/368 (53%), Gaps = 18/368 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    L P ++  ++      PT IQ + IP +    DV G +QTGTGKT +F+LP+L 
Sbjct: 7   NFERFELKPFLIEGLIAQNISLPTEIQERLIPAIKNGSDVIGQSQTGTGKTYAFLLPILD 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA--LLIGGIPFEAQNKKL 119
            + +     +    +I  PTRELA+Q+     K   +   T+   L++GG       +KL
Sbjct: 67  QINEDENETQ---AVITAPTRELASQLYYELNKLTSHAEKTIESQLVVGGTDRLRMMEKL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    V++ TPGR+ D  ++  L +  + +LV+DEAD+MLDMGFI  +    S +    Q
Sbjct: 124 KNKPHVIVGTPGRVADMIDKQALNVREVNVLVVDEADQMLDMGFIEEVDRAASRMGDDLQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+ ++L+     +++NPK +EV     + + I+H  +    +  K+  +     
Sbjct: 184 MLVFSATIPEKLKPFLRKYMKNPKHVEVQPKDVSPKKIKHWLIPDRDRDRKEIIV----- 238

Query: 240 QSQDTMKN-----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
              D  K       +IF N+K+    +   L  QG +V  +HG I  R R K++   ++ 
Sbjct: 239 ---DVSKKLNPYLAVIFTNKKETADEVYEELLNQGLNVDIMHGGISPRQRKKVMKKLQDA 295

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            IQ +VA+DL ARG+D+  + H+ NF++P   E YIHR+GRT RAG  G A T+  + + 
Sbjct: 296 EIQFLVATDLVARGIDVEGISHIINFEIPTELEYYIHRVGRTARAGWDGIAVTIYGRNEQ 355

Query: 355 KHIDAIEK 362
           + I  +EK
Sbjct: 356 QSISKLEK 363


>gi|226501258|ref|NP_001151064.1| LOC100284697 [Zea mays]
 gi|194690824|gb|ACF79496.1| unknown [Zea mays]
 gi|195644024|gb|ACG41480.1| eukaryotic initiation factor 4A [Zea mays]
          Length = 410

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 199/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 39  FDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 98

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G    +    L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 99  LDYGLVECQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASG 155

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 156 VHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGV 215

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 216 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNIDKEDWKLDTLCDLYETLA 275

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 276 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 330

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  
Sbjct: 331 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFD 390

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     V+ L  +++ L
Sbjct: 391 IQRFYNVTVEELPANVADL 409


>gi|323454376|gb|EGB10246.1| hypothetical protein AURANDRAFT_23571 [Aureococcus anophagefferens]
          Length = 545

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 133/384 (34%), Positives = 204/384 (53%), Gaps = 35/384 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +LGL   ++ AV   G+ +PT IQ + +PL L   DVC  A TG+GKTA+F LP+L
Sbjct: 51  INFDELGLCRCLLRAVAALGFSRPTAIQERVVPLALAGRDVCASAATGSGKTAAFGLPLL 110

Query: 61  TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNK 117
             + + +A    P  R +IL PTRELAAQ  +     G+     VAL++GG    + Q  
Sbjct: 111 ERVVRAKAAHGKPTIRGVILLPTRELAAQCEEMVRGLGQFSGADVALVVGGAKDVKVQEL 170

Query: 118 KLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            L R  DV++ TPGR+LDH   G+ + ++++E  V+DEADR+L++GF   ++ +   +P 
Sbjct: 171 ALRRKPDVVVATPGRLLDHLTNGRGVHLDDVECCVLDEADRLLELGFEDELRQLLGALPG 230

Query: 177 ------------TRQTLLFSATMTDELQKVSENFLQNPKRIEVNT---PSSTAETIEHCF 221
                       TRQT+LFSAT   +++ ++   L  P R+ V +       A  +   F
Sbjct: 231 GSERGKGGRGSGTRQTMLFSATFGAKVESLAALSLVRPVRVRVASGHGAGGVAAKLTQDF 290

Query: 222 VATYAQ------YSKKCALLQQLLQSQDTMKNGIIFCNQK---KNVVNLCHSLEKQGF-- 270
           V   A         ++  LL  L ++ D     ++F + K   + V  L  +L  +G   
Sbjct: 291 VRLKAAEGRAEDAEREATLLALLTRTVDPASQAVVFFDTKAATRRVGALLEALRARGGLS 350

Query: 271 -----SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNR 325
                    +HG + Q  R   L+ F+ G   +++ +D+AARGLD+  VG V NF++P  
Sbjct: 351 GHALPPATELHGGLRQAQRDANLARFERGDAGILLCTDVAARGLDLAGVGAVVNFEMPRT 410

Query: 326 AENYIHRIGRTGRAGRHGKAFTLV 349
              Y+HR+GRT RAGR G A TLV
Sbjct: 411 VATYVHRVGRTARAGRSGHAVTLV 434


>gi|302848249|ref|XP_002955657.1| hypothetical protein VOLCADRAFT_66087 [Volvox carteri f.
           nagariensis]
 gi|300259066|gb|EFJ43297.1| hypothetical protein VOLCADRAFT_66087 [Volvox carteri f.
           nagariensis]
          Length = 727

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 131/341 (38%), Positives = 184/341 (53%), Gaps = 17/341 (4%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEK-------GRARVRMPRTLI 77
           PIQ  T+   L   DV G A+TG GKT +FVLP++  IL +       GR   R+P  ++
Sbjct: 127 PIQAMTLEPGLAGVDVVGRARTGCGKTLAFVLPIVERILAEQRKGVAAGRVAGRLPICIV 186

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           L PTRELA QV + F   GK  NL    + GG P++ Q   L +G DV++ TPGRI D  
Sbjct: 187 LAPTRELAKQVQEVFANVGKAANLYTLCVYGGTPYDGQETALSKGVDVVVGTPGRIKDLL 246

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL---VPFTRQTLLFSATMTDELQKV 194
            RG L ++NI   V+DE D+ML MGFI  ++ I       P + QTLLFSAT+   ++ +
Sbjct: 247 ERGTLKLSNIRFRVLDEVDQMLAMGFIEDVETILKAGEQQPDSIQTLLFSATLPKWVKGL 306

Query: 195 SENFLQNPKR---IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
           ++ FL+   R   +  +     A T+ H  +     Y ++  LL+ L+ S       IIF
Sbjct: 307 TQRFLRPGHRFMDLVGDDKMQAAVTVRHLMLP--CSYPQRAGLLKDLITSYGAGGRTIIF 364

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
            + KK    L   L        A+HG++ Q  R + L  F++G   +++A+D+AARGLD+
Sbjct: 365 TDSKKEAAELSVVL-GDSLGAQALHGDLAQSMREQTLDGFRKGRFPVLIATDVAARGLDV 423

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
             +  V   D P   E YIHR GRTGRAG  G   TLV K+
Sbjct: 424 SGIELVLMVDPPADWETYIHRSGRTGRAGSSGTCITLVTKK 464


>gi|50421181|ref|XP_459136.1| DEHA2D15048p [Debaryomyces hansenii CBS767]
 gi|74659326|sp|Q6BRN4|IF4A_DEBHA RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|49654803|emb|CAG87307.1| DEHA2D15048p [Debaryomyces hansenii]
          Length = 397

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 133/376 (35%), Positives = 205/376 (54%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L P +V  +   GY  P+ IQ + I  + +  DV   AQ+GTGKTA+F +  L  
Sbjct: 25  FDDLNLKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQR 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++     +  + LIL PTRELA Q+ +     G   N+TV   IGG   +   +  + G
Sbjct: 85  IDENE---KSTQALILAPTRELALQIQNVITHIGLYLNVTVHASIGGTSMKDDIEAFKSG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ D   R     + +++ ++DEAD ML  GF   I NI  L+P T Q +L
Sbjct: 142 VQIVVGTPGRVFDMIERRFFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQVVL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+ NP RI V     T E I+  ++    Q   K   L  L  S 
Sbjct: 202 LSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYI-NVEQEDYKFDCLCDLYDSI 260

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            ++   +IFCN +  V  L   L+ + F+V AIH ++ Q  R  I++ F+ G+ ++++++
Sbjct: 261 -SVTQAVIFCNTRSKVEFLTTKLKGENFTVSAIHADLPQADRDTIMNEFRSGSSRILIST 319

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D+  +  IEK
Sbjct: 320 DLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDQDVGMMREIEK 379

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  D+ +L
Sbjct: 380 FYSTQIEEMPADIGAL 395


>gi|147902002|ref|NP_001081728.1| probable ATP-dependent RNA helicase DDX4 [Xenopus laevis]
 gi|82217454|sp|Q91372|DDX4_XENLA RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog;
           AltName: Full=Vasa-like protein; Short=xVLG1
 gi|2896107|gb|AAC03114.1| DEAD box protein [Xenopus laevis]
 gi|213623390|gb|AAI69679.1| DEAD box protein [Xenopus laevis]
 gi|213626590|gb|AAI69677.1| DEAD box protein [Xenopus laevis]
          Length = 700

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 130/369 (35%), Positives = 209/369 (56%), Gaps = 24/369 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   V  AGYVK TP+Q  +IP+++   D+   AQTG+GKTA+F+LP+L
Sbjct: 274 LTFEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPIL 333

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFE 113
           +      I      +++ P  +I+ PTREL  Q+  +  K+     +   ++ GGI P  
Sbjct: 334 SYMMNEGITASQYLQLQEPEAIIIAPTRELINQIYLDARKFSYGTCVRPVVVYGGIQPVH 393

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           A  + +E+G ++L  TPGR+LD  ++ K+ ++ +  LV+DEADRMLDMGF P I+ + + 
Sbjct: 394 AM-RDVEKGCNILCATPGRLLDIVSKEKIGLSKLRYLVLDEADRMLDMGFAPEIEKLMTK 452

Query: 174 ----VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV-----NTPSSTAETIEHCFVAT 224
                   RQTL+FSAT  +E+++++ N+L++     V        S  A+T+       
Sbjct: 453 PGMPTKEKRQTLMFSATYPEEIRRLASNYLKSEHLFVVVGLVGGACSDVAQTVLEM---- 508

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
             + + K   L ++L+S +  +  +IF N KK    +   L ++ FS  +IHG+ +Q  R
Sbjct: 509 --RENGKMEKLLEILKSSEKERT-MIFVNTKKKADFIAGYLCQEKFSSTSIHGDREQYQR 565

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
              L +F+ G   ++V + +AARGLDI +V HV N+DVP   + Y+HRIGRTGR G  GK
Sbjct: 566 ESALWDFRTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCGNTGK 625

Query: 345 AFTLVAKED 353
           A +    +D
Sbjct: 626 ATSFFNVQD 634


>gi|193678797|ref|XP_001952274.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
           [Acyrthosiphon pisum]
          Length = 621

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 205/362 (56%), Gaps = 9/362 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE---KG 66
           P ++  +    +  P+P+Q +T P+++  HD+  IAQTGTGKT +F+LP    ++     
Sbjct: 207 PDILEEIQKQKFEVPSPVQCQTWPVIMSGHDLIAIAQTGTGKTLAFLLPAFIHIDFQPTP 266

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLERGADV 125
           R+  + P  L+L PTREL  Q+    +KY  +Y    A+ I GG     Q + L +G ++
Sbjct: 267 RSERKGPSILVLAPTRELVLQIESEVKKY--SYKGIKAMSIYGGASSGKQKEVLRKGVEI 324

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           +I TPGR+ D    G + ++++  L++DEADRMLD+GF P I+     V   RQT++ SA
Sbjct: 325 VIATPGRLNDFVGSGAIDLSDVTFLILDEADRMLDLGFEPQIRVSLLRVRPDRQTIMTSA 384

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T    ++++++++  NP ++ V +   +T  T++   +    +  +K   L   L+S   
Sbjct: 385 TWPPGVKRLAKSYTTNPIQVMVGSLDLTTVNTVKQDILIMDEE--EKEVWLDDFLKSCSA 442

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
               IIF N+K  V  L   L  +G+ V +IHG  +Q  R   L + + G + +++A+D+
Sbjct: 443 DDKIIIFVNRKVTVDQLSSDLCMKGYIVESIHGGREQCDREMALESLRNGEVNILIATDV 502

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           A+RG+DI D+  V N+D     E Y+HR+GRTGRAG+ G A TL+ + D      + +++
Sbjct: 503 ASRGIDINDITVVINYDFTKDIEEYVHRVGRTGRAGKTGLAITLMTRRDWGKAKDLVEVM 562

Query: 365 EK 366
           EK
Sbjct: 563 EK 564


>gi|167622895|ref|YP_001673189.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167352917|gb|ABZ75530.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 413

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 149/430 (34%), Positives = 232/430 (53%), Gaps = 24/430 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F DL LS  +V   L A     T IQ   IP VL   D+  +AQTG+GKT +F LP+L
Sbjct: 1   MNFTDLKLSATIVDH-LPANLTAATEIQGLAIPEVLAGRDLLALAQTGSGKTYAFGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +       R  + L+L PTRELA QVA+  +    +  +TV  L GG+    Q K+LE
Sbjct: 60  QTIINDAVESREVKALVLVPTRELALQVAEALKLVSASTEITV--LCGGVDKAEQLKELE 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LD   + +L + +++ LV+DEADR+++MGF P I+ I   VP  RQT
Sbjct: 118 QGPQLIVATPGRLLDLLRQQQLSLKSVKQLVLDEADRLMEMGFWPDIERILEFVPAKRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKK-CALLQQL 238
           LLFSAT+  EL   +   L NPK+I     +S    I E  ++      ++   AL++Q 
Sbjct: 178 LLFSATLAPELNDKALKLLHNPKKIAAQAVNSVVADINESLYIVNKGDKARALIALIKQH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             SQ      ++F N + +   L   L K   +  A+HG+ + + R + L  FK   +Q+
Sbjct: 238 KWSQ-----VLVFINGRDDADKLAKRLVKADINAMALHGDKEHQQRQQTLEAFKACELQV 292

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V +DL +RG+ I  +  V N D+P+ A  Y+HRIGRT RAG +G A +LV   +  ++ 
Sbjct: 293 LVTTDLLSRGIHIDALPVVINIDLPSSAPVYVHRIGRTARAGDNGIAISLVCHGEADNLK 352

Query: 359 AIEKLI--EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS---TGFDRRKKNY 413
           AI+ L   E +++ L G   +  P          +  RK  P  +K+   +   R  K++
Sbjct: 353 AIQLLTGRELELEALGGFEVTDQP---------SSGERKRAPRDKKANRRSQNKRSAKDF 403

Query: 414 SSQKSHIPLK 423
           +++++  P K
Sbjct: 404 AAKRTKFPAK 413


>gi|145224540|ref|YP_001135218.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           gilvum PYR-GCK]
 gi|145217026|gb|ABP46430.1| DEAD/DEAH box helicase domain protein [Mycobacterium gilvum
           PYR-GCK]
          Length = 468

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 125/351 (35%), Positives = 186/351 (52%), Gaps = 6/351 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   +V A+ + G  +P PIQ  T+P  L   DV G  +TG+GKT +F +P++  
Sbjct: 6   FADLGVPAPLVKALAERGIAEPFPIQAATLPDSLAGRDVLGRGKTGSGKTLAFSIPLVAA 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   R +   P  L+L PTRELA Q+    E       L V  + GG+    Q   L  G
Sbjct: 66  LTGIRRQASRPSGLVLAPTRELATQITAALEPMATAAGLRVTTIYGGVSQGRQVSALRGG 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++  PGR+ D   +  + ++N+ + V+DEAD M D+GF+P +  I +  P   Q LL
Sbjct: 126 IDIVVACPGRLEDLMQQKVISLDNVTVTVLDEADHMADLGFLPGVTRILAATPRGGQRLL 185

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT+ + + K+ + FL NP    VN  + + A+   H F     Q  K   L+ QL  +
Sbjct: 186 FSATLDNGVDKLVQRFLDNPVLHSVNEAAEAPAQMTHHVFHVGGVQEKKD--LVHQL--A 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T +  I+F   K     L   L + G     +HGN+ Q +R + L+ F  G  +++VA
Sbjct: 242 SGTGRR-ILFMRTKHQARKLAKQLTESGVPSVDLHGNLSQPARERNLAAFSSGEARVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   T+V  E
Sbjct: 301 TDIAARGVHVDDVELVVHVDPPMEHKAYLHRSGRTARAGSDGDVVTVVLPE 351


>gi|66812646|ref|XP_640502.1| hypothetical protein DDB_G0281925 [Dictyostelium discoideum AX4]
 gi|60468518|gb|EAL66522.1| hypothetical protein DDB_G0281925 [Dictyostelium discoideum AX4]
          Length = 586

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 196/342 (57%), Gaps = 11/342 (3%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML---TILEKGRARVRMPRTL 76
           G+  PT IQ ++ P++L  +D+ G+A TG+GKT +F+LP L     L K  +    P  L
Sbjct: 129 GFTAPTVIQGQSWPIILGGNDLVGLAATGSGKTLAFLLPALLKIISLPKRPSYGATPLVL 188

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           ++ PTRELA Q+ +  +   +  ++      GG+    Q++ L  G D++I TPGR+ D 
Sbjct: 189 VMAPTRELAQQIEEVCKTSIRGTSIRQLCAYGGLGKIDQSRILRNGVDIVIGTPGRLNDL 248

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
             +  L  ++++ LV+DEADRMLDMGF+P I+++   +P  RQTL+FSAT   E++ ++ 
Sbjct: 249 LRKHHL--SSVQYLVLDEADRMLDMGFMPQIESLIDQIPKERQTLMFSATWPKEVKLLAS 306

Query: 197 NFLQNPKRIEVNTPSSTAE--TIEHCF-VATYAQYSKKCALLQQL--LQSQDTMKNGIIF 251
            FL++P +I V +   T      +H   +   +       +  ++  + + D     I+F
Sbjct: 307 KFLKDPIKITVGSQELTGSINVTQHIVNIDDLSDLQSDDLIYDEINKILTADPTNTVIVF 366

Query: 252 CNQKKNVVNLCHSLEKQ-GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           CN+K    +  H L  Q       +H   DQR R   L  F++  I++++A+D+AARGLD
Sbjct: 367 CNEKYKCDDFQHYLSTQKNVKSIVLHSGKDQRMRESGLKLFRDHRIRILIATDVAARGLD 426

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           IP V  VFN+ +P   E+Y+HRIGRTGRAG+ G A++ V  +
Sbjct: 427 IPSVKAVFNYRLPGNIEDYVHRIGRTGRAGKTGDAWSYVTTQ 468


>gi|325697687|gb|EGD39572.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK160]
          Length = 447

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 197/369 (53%), Gaps = 15/369 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L++    V+    LI  P+RELAAQ+   A     + +   + VA  +GG     Q  
Sbjct: 61  QMLDEEADSVQ---ALITAPSRELAAQIYQAARQLASFSEK-EIRVANYVGGTDKARQIG 116

Query: 118 KLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           KLE     ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P 
Sbjct: 117 KLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPK 176

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TIE+  ++T  +  K   + Q
Sbjct: 177 DLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGR-DKNAQIYQ 235

Query: 237 --QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             QLLQ    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K  
Sbjct: 236 ISQLLQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D 
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDD 351

Query: 355 KHIDAIEKL 363
             I  +EK+
Sbjct: 352 SDIRELEKM 360


>gi|324994094|gb|EGC26008.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK678]
          Length = 447

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 197/369 (53%), Gaps = 15/369 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            IL++    V+    +I  P+RELAAQ+   A     + +   + VA  +GG     Q  
Sbjct: 61  QILDEEADSVQ---AVITAPSRELAAQIYQAARQLASFSEK-EIRVANYVGGTDKARQIG 116

Query: 118 KLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           KLE     ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P 
Sbjct: 117 KLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPK 176

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TIE+  ++T  +  K   + Q
Sbjct: 177 DLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGR-DKNAQIYQ 235

Query: 237 --QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             QLLQ    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K  
Sbjct: 236 ISQLLQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D 
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDD 351

Query: 355 KHIDAIEKL 363
             I  +EK+
Sbjct: 352 SDIRELEKM 360


>gi|9438227|gb|AAF86585.1| DEAD box RNA helicase [Homo sapiens]
          Length = 724

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 197/353 (55%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 303 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKE 362

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 363 LQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 422

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 423 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 482

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   V    Q+SK+  L++ L    D 
Sbjct: 483 TFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQT-VLQVGQFSKREKLVEILRNIGD- 540

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK        L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 541 -ERTMVFVETKKKADFTATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 599

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 600 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHL 652


>gi|146181280|ref|XP_001022468.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|146144241|gb|EAS02223.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 749

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 132/374 (35%), Positives = 203/374 (54%), Gaps = 38/374 (10%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P ++ AV  + Y KPTPIQ++TIP+ LQR D+ GI+QTGTGKT +F++P++T L   R
Sbjct: 330 LPPYILDAVRRSKYEKPTPIQMQTIPIGLQRKDLIGISQTGTGKTCAFLIPLITYL---R 386

Query: 68  ARVRM--------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +   M        P  LIL PTRELA Q+   F+    N  +   +++GG     Q  KL
Sbjct: 387 SLPPMDEEIAKDGPYALILIPTRELAPQIEKEFQNLTSNMRMKSLVMVGGKDEGNQAFKL 446

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF---IPYI--------- 167
           + G ++LI T GRI D   +  L+++ +  +V+DEAD+M+D+ F   + +I         
Sbjct: 447 KLGCELLIGTVGRIKDALEKNYLVLDQVSWVVLDEADKMIDLNFEQDVNFILDKIRTNMK 506

Query: 168 ---QNITSLVP--------FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
              +N+  L            R T LFSATM   L+++++ +L++   I +       + 
Sbjct: 507 SEDENMAVLQEQEAKVGEKIFRVTHLFSATMPPNLERLAKKYLRSFCYISIGEAGDAKKD 566

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
           IE   +  +    +K + LQ++L++       IIF N+K  V  L   L++ G+     H
Sbjct: 567 IEQ--IVDFMSEGQKKSRLQKILET--AKPPIIIFANEKTAVEKLSKILDRWGWQNVIYH 622

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G   Q+ R   +  FK+G   ++VA+DL ARGL +  V  V NFD P   +++IHR GRT
Sbjct: 623 GGKTQQQREAAVDGFKKGKYDILVATDLGARGLHVDGVKMVINFDAPKNIKDFIHRTGRT 682

Query: 337 GRAGRHGKAFTLVA 350
           GRAG+ G A+T V 
Sbjct: 683 GRAGKRGIAYTFVT 696


>gi|328768074|gb|EGF78121.1| hypothetical protein BATDEDRAFT_33571 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 404

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 207/379 (54%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L  +++  +   G+  P+ IQ + I  VL++HDV   AQ+GTGKTA+F    ++I
Sbjct: 33  FDEMNLKKELLRGIFAYGFETPSIIQQRAILPVLRKHDVIAQAQSGTGKTATF---SISI 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     VR  + L+L PTRELA Q+       G    +     IGG        KL+ G
Sbjct: 90  LQNIDETVRECQALVLAPTRELAQQIQKVILALGDFLQIECHACIGGTNVREDMDKLQAG 149

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D  NRG L  N I++ V+DEAD ML  GF   I N+  L+    Q +L
Sbjct: 150 PHVVVGTPGRVFDMINRGALRANKIKMFVLDEADEMLSRGFKEQIYNVFQLLSSEIQVVL 209

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SATM  ++ +V+++F+ +PKRI V     T E I+  ++A   +   +   C L + + 
Sbjct: 210 LSATMPADVLEVTKSFMVDPKRILVKRDELTLEGIKQFYIAVEKEEWKFETLCDLYETV- 268

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   +  + F+V A+HG ++Q+ R  I+  F+ G+ +++
Sbjct: 269 ----TVTQAVIFCNTKRKVDWLTEHMRARDFTVSALHGEMEQKERQTIMGEFRSGSSRIL 324

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   +  ED      
Sbjct: 325 ITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFMTTEDQAMQRD 384

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     +V+ +   ++ L
Sbjct: 385 IETFYNTQVEEMPKSIAGL 403


>gi|297851254|ref|XP_002893508.1| hypothetical protein ARALYDRAFT_473025 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339350|gb|EFH69767.1| hypothetical protein ARALYDRAFT_473025 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 385

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/403 (33%), Positives = 209/403 (51%), Gaps = 43/403 (10%)

Query: 29  IKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK-----GRARVRMPRTLILEPTRE 83
           +  IPL L++ DV GI+QTG+GKTA+FVLPML  + +        +   P  L++ PTRE
Sbjct: 1   MAAIPLGLEQRDVIGISQTGSGKTAAFVLPMLAYISRLPPLREENQTEGPYALVMAPTRE 60

Query: 84  LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           LA Q+ +   K+ +        + GG   E Q  KL +G +++I TPGR++D   R  ++
Sbjct: 61  LAHQIEEETVKFARYLGFKAISITGGESIEKQALKLSQGCEIVIATPGRLIDCLERRYVV 120

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-----------------RQTLLFSAT 186
           +N    LV+DEADRM+DMGF P +  +   +P +                 R T +FSAT
Sbjct: 121 LNQCNYLVLDEADRMIDMGFEPQVAEVLDAMPSSNLKPKKEDEELEEKKIYRTTYMFSAT 180

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
           M   +++++  +L+NP    V T   T + I    V T  + S K + L++L+      K
Sbjct: 181 MLHSVERLARKYLRNPV---VVTIGETTKFITQKVVMT--KESNKFSRLKKLIDDLSDDK 235

Query: 247 NGIIFCNQKKNVVNLCHSLEKQG-FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
             I+F N +  V  +  +LEK     V  +H    Q  R   L  FK+    ++V +D+ 
Sbjct: 236 TAIVFVNTRNKVDYIVKNLEKLARCRVTTLHAGKSQEQRDYSLEEFKKKRFNVLVTTDVL 295

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI-EKLI 364
            RGLDI D+  V N+D+PN  + Y HRIGRTGRAG+ G A T +  ED      + +KLI
Sbjct: 296 GRGLDILDLAQVINYDMPNTMDLYTHRIGRTGRAGKTGIATTFLTLEDKDLFYGLKQKLI 355

Query: 365 EKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKSTGF 406
           E          +SL PP    ++A+H  ++ K   +P + + F
Sbjct: 356 E---------CNSLVPP----ELARHEASKFKPGTVPDRFSHF 385


>gi|321469269|gb|EFX80250.1| putative germ-line specific RNA helicase vasa protein [Daphnia
           pulex]
          Length = 761

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 129/375 (34%), Positives = 211/375 (56%), Gaps = 14/375 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + GL P ++  + ++GYVKPTP+Q  +I ++L + D+   A TG+GKTA++++P++ I
Sbjct: 329 FEEAGLRPLLLQNIKNSGYVKPTPVQKGSIAVILAKRDLIASAVTGSGKTAAYLVPVMNI 388

Query: 63  L-EKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           L E+G        V+ P  +IL PTRELA Q+     K+  N  L   L+ GG     Q 
Sbjct: 389 LLEQGISGGSHGMVQKPEVVILAPTRELAIQIHREAYKFAYNSVLKSVLIYGGTVSSNQR 448

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---SL 173
             L+ G ++L+ T GR+ D  +RG    + ++ L++DEADRMLDMGF P I+ I    ++
Sbjct: 449 SNLQAGCNILVATTGRLKDFLDRGVFDFSAVKFLILDEADRMLDMGFGPDIEKIAAHPTM 508

Query: 174 VP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            P   R+T +FSAT  +E+Q ++ N++++   +   T   T   ++  F    A+  K+ 
Sbjct: 509 PPKGIRRTCMFSATFPEEVQALAANYMEDYIFVTTGTVGGTNPDVQQEFFQC-ARNEKRT 567

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L++ L    ++    I+F + KK    +   L        +IHG+  Q  R + L + K
Sbjct: 568 KLMETLRGLGESKI--IVFVDSKKTADFVAVYLCNNDIQATSIHGDRLQSQREEALRDLK 625

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+++AARGLDI  V +V N+D+P+  E Y+HRIGRTGR G  G + +   +E
Sbjct: 626 SGKRNVLVATNVAARGLDIEGVNYVINYDLPSDIEEYVHRIGRTGRVGNVGHSISFFDEE 685

Query: 353 -DIKHIDAIEKLIEK 366
            D  ++  +  L+ K
Sbjct: 686 KDGPNVGKLVSLLTK 700


>gi|167515852|ref|XP_001742267.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778891|gb|EDQ92505.1| predicted protein [Monosiga brevicollis MX1]
          Length = 591

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 132/343 (38%), Positives = 197/343 (57%), Gaps = 26/343 (7%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-EKGR-ARVRMP 73
           +L  GY K   IQ +T   +L+  D+ G A+TG GKT SF LP++ +L ++GR  R R P
Sbjct: 14  MLTKGYTKLFEIQSRTFTPILEGKDILGKARTGEGKTLSFALPIIELLLKEGRNGRGRAP 73

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R L + PTRELA QV   F   G +  L    + GG P+  Q   + RG DV+I TPGR+
Sbjct: 74  RALCMAPTRELAHQVGKEFADIGPS--LASTCVYGGAPYMPQESAIRRGLDVIIGTPGRL 131

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR----QTLLFSATMTD 189
            DH ++G L + +I+ L++DEADRML+ GF+  I  I  +         Q +LFSATM D
Sbjct: 132 KDHLDKGTLKLTDIKYLILDEADRMLEQGFVEAIDEIQKMTIAQSGGKPQMILFSATMPD 191

Query: 190 ELQKVSENFLQNPKRIEVNTPSS----TAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
            +    +N++  P  + V+T  S    T++ ++H  +A    ++++ A++  ++Q    M
Sbjct: 192 FILSTVKNYM--PNHVTVDTVGSSRNRTSKGVDH--LAIKCPWTERRAVIADVVQ----M 243

Query: 246 KNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +G     IIF   KK+   L    + +   V  +HG+I Q+ R   L  F++G ++ +V
Sbjct: 244 YSGAHGRTIIFTQTKKDANELALETDLRQ-EVQVLHGDIPQKQREMSLQAFRDGKVRCLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           A+D+AARGLDIP+V  V   + P   E+YIHR GRTGRAGR G
Sbjct: 303 ATDVAARGLDIPEVDLVVQCEPPKDVESYIHRSGRTGRAGRTG 345


>gi|320011360|gb|ADW06210.1| DEAD/DEAH box helicase domain protein [Streptomyces flavogriseus
           ATCC 33331]
          Length = 571

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 119/332 (35%), Positives = 176/332 (53%), Gaps = 8/332 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G  +P PIQ  T+P  L   D+ G  +TG+GKT +F L +L      R+    P  L+L 
Sbjct: 81  GVTEPFPIQGATLPNSLAGRDILGRGRTGSGKTLAFGLALLARTAGRRSEPHAPLALVLV 140

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA QV D    Y    NL VA ++GG+    Q+  L RGA+VL+ TPGR+ D   R
Sbjct: 141 PTRELAQQVTDALTPYATAVNLRVATVVGGMSISRQSGALRRGAEVLVATPGRLKDLIER 200

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
           G   ++ + I V+DEAD+M DMGF+P +  +   V    Q +LFSAT+   + ++ + FL
Sbjct: 201 GDCRLDAVSITVLDEADQMADMGFMPQVVALLKQVEPDGQRMLFSATLDKNIDRLVKMFL 260

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG--IIFCNQKKN 257
            +P    V+  +    T+EH  +    +  KK       + ++   ++G  I+F + K+ 
Sbjct: 261 TDPVVHSVDPSAGAVTTMEHHVLHVADETDKKA------VATRIAARDGRVIMFVDTKRG 314

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
                  L   G    A+HG   Q  R + L  FK G +  +VA+++AARG+ + D+  V
Sbjct: 315 ADRFAKRLLASGVRAAALHGGRSQPQRNRTLDQFKNGQVTALVATNVAARGIHVDDLDLV 374

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 375 VNVDPPTDHKDYLHRGGRTARAGESGSVVTLV 406


>gi|315444871|ref|YP_004077750.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
 gi|315263174|gb|ADT99915.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
          Length = 468

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 125/351 (35%), Positives = 186/351 (52%), Gaps = 6/351 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   +V A+ + G  +P PIQ  T+P  L   DV G  +TG+GKT +F +P++  
Sbjct: 6   FADLGVPAPLVKALAERGIAEPFPIQAATLPDSLAGRDVLGRGKTGSGKTLAFSIPLVAA 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   R +   P  L+L PTRELA Q+    E       L V  + GG+    Q   L  G
Sbjct: 66  LTGIRRQASRPSGLVLAPTRELATQITAALEPMATAAGLRVTTIYGGVSQGRQVSALRGG 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++  PGR+ D   +  + ++N+ + V+DEAD M D+GF+P +  I +  P   Q LL
Sbjct: 126 IDIVVACPGRLEDLMQQKVISLDNVTVTVLDEADHMADLGFLPGVTRILAATPRGGQRLL 185

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT+ + + K+ + FL NP    VN  + + A+   H F     Q  K   L+ QL  +
Sbjct: 186 FSATLDNGVDKLVQRFLDNPVLHSVNEAAEAPAQMTHHVFHVGGVQEKKD--LVHQL--A 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T +  I+F   K     L   L + G     +HGN+ Q +R + L+ F  G  +++VA
Sbjct: 242 SGTGRR-ILFMRTKHQARKLAKQLTESGVPSVDLHGNLSQPARERNLAAFSSGEARVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   T+V  E
Sbjct: 301 TDIAARGVHVDDVELVVHVDPPMEHKAYLHRSGRTARAGSDGDVVTVVLPE 351


>gi|156550255|ref|XP_001602397.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 715

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 122/380 (32%), Positives = 208/380 (54%), Gaps = 7/380 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG--- 66
           P ++  +    + KP+PIQ +  P++L   D+ GIAQTGTGKT +F+LP L  ++     
Sbjct: 283 PDILVEIRKQNFEKPSPIQCQAWPILLSGKDMIGIAQTGTGKTLAFLLPALIHIDNQDTP 342

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R+    P  L++ PTRELA Q+     KY   + +    + GG   + Q   + +G +++
Sbjct: 343 RSERSGPTVLVMAPTRELALQIEKEVNKY-YYHGIKAVCVYGGGDRKKQMNIVSKGVEIV 401

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      L +  +  LV+DEADRMLDMGF P I+     +   RQT++ SAT
Sbjct: 402 IATPGRLNDLIQTEVLDVKCVSYLVLDEADRMLDMGFEPQIRKSLLDIRPDRQTVMTSAT 461

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQSQDTM 245
               +++++E+++++P  I V   S   + +       +     +K  +L+    +    
Sbjct: 462 WPPGVRRLAESYMKSP--ITVCVGSLDLKAVHSVTQKIWIVDEEEKTDVLKDFFHNMAPS 519

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F  +K  V ++   L   G +  +IHG  +Q  R + L + K G + +++A+D+A
Sbjct: 520 DKVIVFFGKKCKVDDIGSDLALSGVACQSIHGGREQADREQALEDIKTGDVNILLATDVA 579

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RG+DI D+ HVFN+D P   E Y+HR+GRTGRAG+ G++ +LV + D      + K++E
Sbjct: 580 SRGIDIEDITHVFNYDFPRDIEEYVHRVGRTGRAGKTGESISLVTRRDWGLTKELIKILE 639

Query: 366 KKVDWLNGDLSSLNPPLEKI 385
           +    +  +L S++   E +
Sbjct: 640 EAEQEIPTELYSMSERYEAM 659


>gi|5669638|gb|AAD46404.1|AF096248_1 ethylene-responsive RNA helicase [Solanum lycopersicum]
          Length = 474

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 129/373 (34%), Positives = 192/373 (51%), Gaps = 44/373 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+G    V+  +  AG+ +PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP +  
Sbjct: 98  FHDVGFPDYVLQEIEKAGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTIAYLLPAIVH 157

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                IL+ G      P  L+L PTRELA Q+     K+G +  +    + GG+P   Q 
Sbjct: 158 VNAQPILDHGDG----PIVLVLAPTRELAVQIQQEATKFGASSRIKNTCIYGGVPKGPQV 213

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L++G +++I TPGR++D        +  + I V+DEADRMLDMGF P I+   S  P 
Sbjct: 214 RDLQKGVEIVIATPGRLIDMLESNHTNLRRVTI-VLDEADRMLDMGFEPQIRKCISDTP- 271

Query: 177 TRQTLLFSATMTDELQKVSE---NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
            RQTL +SAT    +  VS    N L + K                        Y+K   
Sbjct: 272 DRQTLYWSATWPKNVNHVSSACGNRLGDQK------------------------YNKLVK 307

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL+ ++       + I+     K    +   L   G+   +IHG+  Q  R  +LS FK 
Sbjct: 308 LLEDIMDG-----SRILIFRTLKGCDQVTRQLRMDGWPALSIHGDKSQAERDWVLSEFKA 362

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +M A+D+AARGLD+ DV  V N+D P   E+Y+HRIGRTGRAG  G A+T     +
Sbjct: 363 GKSPIMTATDVAARGLDVKDVKFVINYDFPGSLEDYVHRIGRTGRAGASGTAYTFFTAAN 422

Query: 354 IKHIDAIEKLIEK 366
            +    +  ++E+
Sbjct: 423 ARFAKDLVNILEE 435


>gi|300120116|emb|CBK19670.2| unnamed protein product [Blastocystis hominis]
          Length = 607

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 125/369 (33%), Positives = 205/369 (55%), Gaps = 12/369 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           +A  GL+ K++  +   GY KP PIQ + IP V+   +V  +A+TG+GKT +++LP+   
Sbjct: 48  WAQCGLTEKILHVINKLGYAKPFPIQSQAIPTVMSGREVIAVAKTGSGKTLAYLLPLFRH 107

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL++        P  LIL P REL AQ+ +   K+ K   + +  + GG     Q   L+
Sbjct: 108 ILDQPPVVEGDGPIGLILAPARELVAQIYNEASKFCKVLGIRITAVYGGTSMTEQINSLK 167

Query: 121 RGADVLICTPGRILD--HFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RG+++++CTPGR++D    N+G+L+ +  +  +V+DEADRMLDMGF P I  I       
Sbjct: 168 RGSEIIVCTPGRMIDILCLNQGRLVGLRRVSYVVLDEADRMLDMGFEPQITTILQNARPD 227

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ ++FSAT    ++ ++   L+ P  I V   +  A  +    +    +  K   LLQ 
Sbjct: 228 RQLVMFSATFPTHVENLARKMLKKPVMIVVGGRTEVAAEVSQT-IEVRTKEQKFPRLLQI 286

Query: 238 LLQSQDTMKNGII--FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L +  D    G+I  F ++++    L   L + G+    +HG +DQ+ R + + +FK   
Sbjct: 287 LGEWYD---RGLILVFVDKQQKADYLFRDLLRSGYYSYILHGGMDQQDRDQTIVDFKNKV 343

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDI 354
             +++A+ +A RG+ + D+  V N+D PN  E+Y+HR+GRTGRAG  G A T +  +ED+
Sbjct: 344 RTILIATSVAGRGIHVNDLVLVINYDCPNHLEDYVHRVGRTGRAGNKGTAITFITPQEDM 403

Query: 355 KHIDAIEKL 363
              D ++ L
Sbjct: 404 YASDMVKAL 412


>gi|297191502|ref|ZP_06908900.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197722058|gb|EDY65966.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 502

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 121/347 (34%), Positives = 184/347 (53%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +  +++ A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L ML  
Sbjct: 75  FADLDMPEQLLAALAAQGVTVPFPIQGATLPNTLAGRDVLGRGRTGSGKTLAFGLAMLAG 134

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R+P  L+L PTRELA QV D    Y ++  L +A ++GG+    Q   L  G
Sbjct: 135 TAGKRAEPRLPLALVLVPTRELAQQVTDALTPYARSLKLRLATVVGGMSIGRQAGALRSG 194

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D   RG   ++ + + V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 195 AEVVVATPGRLKDLIQRGDCRLDQVAVTVLDEADQMADMGFMPQVTALLDQVRPDGQRML 254

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  +    T+EH  +  +   + K A   ++    
Sbjct: 255 FSATLDRNVDLLVRRYLNDPVVHSVDPSAGAVTTMEHHVL--HVDSADKHATTTEIAARD 312

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F + K  V  L   L   G     +HG   Q  R + L+ FK G + ++VA+
Sbjct: 313 GRV---IMFLDTKHAVDRLTKDLLNSGVRAAGLHGGKSQPQRNRTLTQFKSGHVTVLVAT 369

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 370 NVAARGIHVDNLDLVVNVDPPTDPKDYLHRGGRTARAGESGSVVTLV 416


>gi|75076134|sp|Q4R5S7|DDX4_MACFA RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog
 gi|67970411|dbj|BAE01548.1| unnamed protein product [Macaca fascicularis]
          Length = 725

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 124/353 (35%), Positives = 197/353 (55%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRAR 69
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L       I       
Sbjct: 304 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASCFKE 363

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           ++ P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 364 LQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 423

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 424 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 483

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   V    Q+SK+  L++ L    D 
Sbjct: 484 TFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQT-VLQVGQFSKREKLVEILRNIGD- 541

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 542 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 600

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 601 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHL 653


>gi|6322323|ref|NP_012397.1| Tif2p [Saccharomyces cerevisiae S288c]
 gi|6322912|ref|NP_012985.1| Tif1p [Saccharomyces cerevisiae S288c]
 gi|124218|sp|P10081|IF4A_YEAST RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Stimulator factor I 37 kDa component;
           AltName: Full=Translation initiation factor 1/2;
           AltName: Full=p37
 gi|160395531|sp|A6ZQJ1|IF4A_YEAS7 RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Stimulator factor I 37 kDa component;
           AltName: Full=Translation initiation factor 1/2;
           AltName: Full=p37
 gi|192988258|pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
 gi|192988259|pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
 gi|192988263|pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
 gi|192988264|pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
 gi|4621|emb|CAA31301.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|4623|emb|CAA31302.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|486521|emb|CAA82138.1| TIF1 [Saccharomyces cerevisiae]
 gi|854559|emb|CAA60817.1| translation initiation factor [Saccharomyces cerevisiae]
 gi|1015544|emb|CAA89433.1| TIF2 [Saccharomyces cerevisiae]
 gi|151941599|gb|EDN59962.1| translation initiation factor eIF4A subunit [Saccharomyces
           cerevisiae YJM789]
 gi|151944988|gb|EDN63243.1| translation initiation factor eIF4A subunit [Saccharomyces
           cerevisiae YJM789]
 gi|190409872|gb|EDV13137.1| eukaryotic initiation factor 4A [Saccharomyces cerevisiae RM11-1a]
 gi|259147888|emb|CAY81138.1| Tif1p [Saccharomyces cerevisiae EC1118]
 gi|285812764|tpg|DAA08662.1| TPA: Tif2p [Saccharomyces cerevisiae S288c]
 gi|285813313|tpg|DAA09210.1| TPA: Tif1p [Saccharomyces cerevisiae S288c]
 gi|323304041|gb|EGA57820.1| Tif1p [Saccharomyces cerevisiae FostersB]
 gi|323304434|gb|EGA58205.1| Tif2p [Saccharomyces cerevisiae FostersB]
 gi|323308246|gb|EGA61495.1| Tif1p [Saccharomyces cerevisiae FostersO]
 gi|323332640|gb|EGA74046.1| Tif1p [Saccharomyces cerevisiae AWRI796]
 gi|323332976|gb|EGA74378.1| Tif2p [Saccharomyces cerevisiae AWRI796]
 gi|323336789|gb|EGA78053.1| Tif1p [Saccharomyces cerevisiae Vin13]
 gi|323337041|gb|EGA78297.1| Tif2p [Saccharomyces cerevisiae Vin13]
 gi|323347652|gb|EGA81917.1| Tif1p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323348035|gb|EGA82293.1| Tif2p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323354172|gb|EGA86018.1| Tif1p [Saccharomyces cerevisiae VL3]
 gi|323354391|gb|EGA86230.1| Tif2p [Saccharomyces cerevisiae VL3]
          Length = 395

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 132/377 (35%), Positives = 212/377 (56%), Gaps = 8/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  V   G+ +P+ IQ + I  +++ HDV   AQ+GTGKT +F +  L  
Sbjct: 24  FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAAL-- 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            ++    V+ P+ L+L PTRELA Q+         + ++ V   IGG  F    + L R 
Sbjct: 82  -QRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RD 139

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A +++ TPGR+ D+  R +   + I++ ++DEAD ML  GF   I  I +L+P T Q +L
Sbjct: 140 AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVL 199

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQLLQS 241
            SATM +++ +V+  F++NP RI V     T E I+  +V     +Y  +C  L  L  S
Sbjct: 200 LSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYEC--LTDLYDS 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   L    F+V AI+ ++ Q+ R  I+  F+ G+ +++++
Sbjct: 258 I-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIS 316

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  ED+  +  +E
Sbjct: 317 TDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELE 376

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    +++ L  D+++L
Sbjct: 377 KFYSTQIEELPSDIATL 393


>gi|28575014|ref|NP_612028.4| CG32344 [Drosophila melanogaster]
 gi|18447311|gb|AAL68229.1| LD28101p [Drosophila melanogaster]
 gi|23092697|gb|AAN11439.1| CG32344 [Drosophila melanogaster]
 gi|220947558|gb|ACL86322.1| CG32344-PA [synthetic construct]
          Length = 827

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 200/357 (56%), Gaps = 6/357 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   GY  PTPIQ KTIPL+L+  DV  +A+TG+GKTA F++P+   
Sbjct: 41  FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++ R   +  R LIL PTRELA Q     ++ G+   L   L++GG   ++Q   +   
Sbjct: 101 LQR-REPTKGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTC 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR L       L +N+IE +V DEADR+ +MGF   +      +P +RQT++
Sbjct: 160 PDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQTVM 219

Query: 183 FSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           FSAT+   L + +   L +P   R++V +    A  ++  +     +Y+    LL+ ++ 
Sbjct: 220 FSATLPKLLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYVIP 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   + +V  + + L + G S  +++ ++D  +R    + F    + +++
Sbjct: 280 VQS---QTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLI 336

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +D+AARG+DIP +  V N   P + + ++HR+GR  RAGR G A+++V+ +D  H+
Sbjct: 337 VTDVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHL 393


>gi|328873249|gb|EGG21616.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           fasciculatum]
          Length = 397

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 124/348 (35%), Positives = 186/348 (53%), Gaps = 7/348 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  V   G+ KP+ IQ + I  + + +D+   AQ+GTGKTA+F +    I
Sbjct: 28  FDGMDLPKDLLRGVYSYGFEKPSAIQQRAITPLAKGYDIIAQAQSGTGKTATFTIG---I 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +   + LI+ PTRELA Q+       G+   +     IGG       + L+ G
Sbjct: 85  LSQINTSIFKCQALIIAPTRELAIQIQKVVVSLGEYLKIKCYACIGGTKVSDDVQSLQSG 144

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ +  +RG +   +I I V+DEAD ML  GF   I  I  L+P   Q  L
Sbjct: 145 VHVVVGTPGRVHEMLSRGVITRESIRIFVLDEADEMLSRGFKDQIYEIFRLLPEKIQVGL 204

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATMT+E   ++  F+  P +I V     T E I   +V   ++  K   L    L   
Sbjct: 205 FSATMTEETLGITTKFMNTPVKILVKKDELTLEGIRQFYVNVGSEQGKFDVLTD--LYET 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            ++   +IFCN ++ V  L + L +Q F+V + HG  DQ+ R  ILS+F+ G  ++++ +
Sbjct: 263 LSITQSVIFCNTRRKVDWLTNKLTEQQFTVSSTHG--DQKDREGILSSFRSGITRVLITT 320

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           DL ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   + 
Sbjct: 321 DLLARGIDVQQVSLVINYDIPGNLENYIHRIGRSGRFGRKGVAINFIT 368


>gi|240274195|gb|EER37713.1| ATP-dependent RNA helicase DBP3 [Ajellomyces capsulatus H143]
 gi|325095426|gb|EGC48736.1| ATP-dependent RNA helicase DBP3 [Ajellomyces capsulatus H88]
          Length = 487

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 126/346 (36%), Positives = 198/346 (57%), Gaps = 18/346 (5%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILE--KGRARVRMPRTLI 77
           + KPTPIQ  T P +    DV G+A+TG+GKT +F +P +  +LE     +  R+   +I
Sbjct: 90  FSKPTPIQSVTWPYLFAGRDVIGVAETGSGKTLAFGVPCIRKVLEINASHSSFRI-SAVI 148

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           + PTRELA Q+ D   K+  N  + +A + GG   + Q + L++ A V++ TPGR+ D  
Sbjct: 149 ITPTRELAMQIYDQLVKFTPN-GVGLACIYGGASKDDQRRALKK-ASVIVATPGRLKDFH 206

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--QTLLFSATMTDELQKVS 195
           +   L +  ++ LV+DEADRMLD GF   I++I S +P +R  QT++F+AT    ++K++
Sbjct: 207 SDESLNLKKVKYLVLDEADRMLDKGFEQDIKDILSAMPSSRKRQTVMFTATWPISVRKLA 266

Query: 196 ENFLQNPKRIEVNTPSST--------AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
             F++ P  + +    S+         + +E   V    + S+  +LL Q  + ++ M  
Sbjct: 267 TTFMKEPITVTIGGDLSSDIRANTRIKQIVE--VVKPENKESRLLSLLNQYQRGRNAMDK 324

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            ++FC  KK    +   +  +GF V  IHG+++Q  R   L  FK G++ ++VA+D+AAR
Sbjct: 325 VLVFCLYKKEATRIERFIRSKGFKVAGIHGDMNQTERFNSLDAFKLGSVPVLVATDVAAR 384

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           GLDIP V  V N   P   E+Y+HRIGRTGRAG  G A T+  + D
Sbjct: 385 GLDIPAVKLVLNVTFPLTVEDYVHRIGRTGRAGSDGLAITMFTEND 430


>gi|325695201|gb|EGD37102.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK150]
          Length = 447

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 197/369 (53%), Gaps = 15/369 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            IL++    V+    +I  P+RELAAQ+   A     + +   + VA  +GG     Q  
Sbjct: 61  QILDEEADSVQ---AVITAPSRELAAQIYQAARQLASFSEK-EIRVANYVGGTDKTRQIG 116

Query: 118 KLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           KLE     ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P 
Sbjct: 117 KLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPK 176

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TIE+  ++T  +  K   + Q
Sbjct: 177 DLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGR-DKNAQIYQ 235

Query: 237 --QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             QLLQ    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K  
Sbjct: 236 ISQLLQPYLAM----IFVNTKTRADELHSYLTTQGLKVTKIHGDIAPRERKRIMNQVKNL 291

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D 
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDD 351

Query: 355 KHIDAIEKL 363
             I  +EK+
Sbjct: 352 SDIRELEKM 360


>gi|195389156|ref|XP_002053243.1| GJ23450 [Drosophila virilis]
 gi|194151329|gb|EDW66763.1| GJ23450 [Drosophila virilis]
          Length = 829

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 118/357 (33%), Positives = 197/357 (55%), Gaps = 6/357 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  +++  +   GY  PTPIQ KTIPL+L+  DV  +A+TG+GKTA F++PM   
Sbjct: 40  FQSLGLGFELLKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPMFEK 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++ R   +  R LIL PTRELA Q     +  G+   L   L++GG   ++Q   +   
Sbjct: 100 LQR-REPTKGARALILSPTRELAVQTYKFIKDLGRFMELKTILVLGGDSMDSQFSAIHTC 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR L       L +N+IE +V DEADR+ +MGF   +      +P +RQ ++
Sbjct: 159 PDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQMVM 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQQLLQ 240
           FSAT+   L + +   L +P  I ++  S   ET+   F+      +Y+    LL+ ++ 
Sbjct: 219 FSATLPKLLVEFARAGLSDPVLIRLDVESKLPETLALKFLYCRPDDRYTALVVLLKYVIP 278

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   + +V  + + L + G S  +++ ++D  +R    + F    + +++
Sbjct: 279 QQ---AQTVVFAGTQHHVELISYILTQAGISNTSVYSSLDPAARKINTAKFASKKVSVLI 335

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +D+AARG+DIP + +V N   P   + ++HR+GR  RAGR G A+++ + +D  H+
Sbjct: 336 VTDVAARGIDIPSLDYVVNLHFPGIPKLFVHRVGRCARAGRTGTAYSIFSTDDTAHL 392


>gi|221061545|ref|XP_002262342.1| ATP-dependent RNA helicase [Plasmodium knowlesi strain H]
 gi|193811492|emb|CAQ42220.1| ATP-dependent RNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 713

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 135/402 (33%), Positives = 210/402 (52%), Gaps = 62/402 (15%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F+D+     +V   L+A + +PT IQ  T P+ L   D+ G+A+TG+GKT +F LP ++
Sbjct: 274 NFSDVNFHEAIVNH-LNAKFKEPTAIQKVTWPIALSGKDLIGVAETGSGKTLAFALPGLM 332

Query: 61  TIL-------------EKGRARV------------------------------------- 70
            IL             E+G+  +                                     
Sbjct: 333 HILKQRERQVEKENGWEQGQEGIGEKTTQEWTNESMQGATQDAVQGDTEGATQRSGDRYV 392

Query: 71  ----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
               R    LIL PTREL  QV D  + + K  ++    + GG+P   Q   L++GAD++
Sbjct: 393 HQGDRTVYGLILLPTRELCMQVVDEIKIFEKELDIRSVAVYGGVPKYTQINNLKKGADIV 452

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+LD    G + +     +VIDEADR+LDMGF   ++ I + V   +Q L F+AT
Sbjct: 453 VATPGRLLDLLENGVIHLLRCIYVVIDEADRLLDMGFEKQLKKIMTQVNKNKQLLFFTAT 512

Query: 187 MTDELQKVSENFLQ-NPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
             +++++++ +F   +P +I+V     TA + IE   + +    S            Q+ 
Sbjct: 513 WPEQVRQLAYDFSSLDPVKIQVGKSELTANKNIEQSVIVSS---SIDLKKKLLDWLKQNY 569

Query: 245 MKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             N I IFC+ K+N  NLC  L    ++  AIHG+ +QR R +IL+N++     ++VA+D
Sbjct: 570 EGNKILIFCDTKRNCDNLCKELRYHQYNALAIHGDKEQRERDRILNNYRSDRCNILVATD 629

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           +A+RGLDI ++  V N+D+PN  E+YIHRIGRTGRAG+ GKA
Sbjct: 630 VASRGLDIKNISIVVNYDLPNTIEDYIHRIGRTGRAGKKGKA 671


>gi|138896049|ref|YP_001126502.1| DEAD-box ATP dependent DNA helicase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134267562|gb|ABO67757.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Geobacillus
           thermodenitrificans NG80-2]
          Length = 436

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 133/384 (34%), Positives = 204/384 (53%), Gaps = 12/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P V+ A+    + KPT IQ + IP  L+   + G +QTGTGKT +++LP++  
Sbjct: 6   FTRFPFQPFVIEAIQALRFYKPTEIQERIIPRALRGESMVGQSQTGTGKTHAYLLPIIEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           ++  RA V+    +I  PTRELA Q+     K  K    +  +     IGG   +   +K
Sbjct: 66  IDPERAEVQ---AVITAPTRELATQIYHETLKITKFCPKDRMIVARCFIGGTDKQKALEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L     ++I TPGRI D      L ++    LV+DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LHVQPHIVIGTPGRINDFIREQALDVHTARTLVVDEADLMLDMGFITDVDQIAARMPKEL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+   + +++NP  I+V    +  + IEH  +    +  +K  LL  +
Sbjct: 183 QMLVFSATIPEKLKPFLKKYMENPTFIQVEPKQTANKNIEHVLIPLRGR--EKVKLLYDV 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S +     I+F N +K    +   L +QG  V  +HG++  R R K+++  ++   Q 
Sbjct: 241 LVSYNPY-LAIVFVNTRKRADEVADQLAEQGLKVGVLHGDLTPRERKKMMNQIRDLEFQY 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N+++P+  + YIHR GRT RAG  G A T+    D   I 
Sbjct: 300 VVATDLAARGIDIEGVSHVINYELPDDLQFYIHRAGRTARAGYSGIAATIYEPTDQDAIA 359

Query: 359 AIEKLIEKKV--DWLNGDLSSLNP 380
            +EK+    V  D + G+   L P
Sbjct: 360 RLEKMGISFVHRDLVRGEWKDLPP 383


>gi|126315120|ref|XP_001365663.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 700

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 127/355 (35%), Positives = 197/355 (55%), Gaps = 18/355 (5%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 275 ITKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKD 334

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 335 QQEPECIIVAPTRELINQIFLEARKFSFGTCIRPVVIYGGTQLGHSIRQIMQGCNILCAT 394

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  I  LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 395 PGRLMDIIGKEKIGLRQIRYLVLDEADRMLDMGFGPEMKKLISFPGMPSKDQRQTLMFSA 454

Query: 186 TMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL--LQSQ 242
           T  +E+Q+++  FL+     + V         ++   V    QYSK+  L++ L  +  +
Sbjct: 455 TFPEEIQRLAGEFLKTDYLFVAVGQVGGACSDVQQT-VLQVGQYSKREKLVEILRNIGEE 513

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            TM    +F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+
Sbjct: 514 RTM----VFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVAT 569

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  GKA +    E   H+
Sbjct: 570 SVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNIGKAISFFDPEPDSHL 624


>gi|82539875|ref|XP_724294.1| DEAD/DEAH box helicase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23478891|gb|EAA15859.1| DEAD/DEAH box helicase, putative [Plasmodium yoelii yoelii]
          Length = 715

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 128/387 (33%), Positives = 205/387 (52%), Gaps = 46/387 (11%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+DL     ++   L+  + +PT IQ  T P+ L   D+ G+A+TG+GKT +FVLP L 
Sbjct: 290 NFSDLDFHESIL-NYLNEKFKEPTAIQKITWPIALSGKDLIGVAETGSGKTLAFVLPCLM 348

Query: 62  ILEKGRARV-----------------------------------------RMPRTLILEP 80
            + K + +                                          R    LIL P
Sbjct: 349 HILKHKQKEMEENGVEPIKNNEVKLSENDNNDNNYDPDFEKEFQNDDSENRKTYGLILLP 408

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TREL  QV +  + +    NL    + GG+P   Q   +++GAD+++ TPGR+LD+   G
Sbjct: 409 TRELCMQVLNEIKNFESELNLKAVAVYGGVPKYFQINNIKKGADIIVATPGRLLDYLENG 468

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200
            + +     +VIDEADR+LDMGF   ++ I + +   +Q L  +AT  ++++K++ +F  
Sbjct: 469 IINLLRCIYVVIDEADRLLDMGFEKQLRKIMTQINKNKQLLFLTATWPEQVRKLAYDFCS 528

Query: 201 -NPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
            +P +I++     TA + IE   + + +   KK  L       ++     +IFC+ K+N 
Sbjct: 529 FDPVKIQIGKSELTANKNIEQQVIVSSSIDLKKKLLDWLKDNYENNK--ILIFCDTKRNC 586

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            NLC  L    ++  +IHG+  QR R +IL+N+K     ++VA+D+A+RGLDI ++  V 
Sbjct: 587 DNLCKELRYHQYNSLSIHGDKQQRERDRILNNYKNDRCNILVATDVASRGLDIKNISIVI 646

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKA 345
           N+D+PN  E+YIHRIGRTGRAG  GK+
Sbjct: 647 NYDIPNTIEDYIHRIGRTGRAGNKGKS 673


>gi|332362965|gb|EGJ40754.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK49]
          Length = 447

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 197/369 (53%), Gaps = 15/369 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L++    V+    +I  P+RELAAQ+   A     + +   + VA  +GG     Q  
Sbjct: 61  QMLDEEADSVQ---AVITAPSRELAAQIYQAARQLASFSEK-EIRVANYVGGTDKARQIG 116

Query: 118 KLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           KLE     ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P 
Sbjct: 117 KLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPK 176

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TIE+  ++T  +  K   + Q
Sbjct: 177 DLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGR-DKNAQIYQ 235

Query: 237 --QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             QLLQ    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K  
Sbjct: 236 ISQLLQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D 
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLRGTAITLYQPSDD 351

Query: 355 KHIDAIEKL 363
             I  +EK+
Sbjct: 352 SDIRELEKM 360


>gi|145476289|ref|XP_001424167.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391230|emb|CAK56769.1| unnamed protein product [Paramecium tetraurelia]
          Length = 475

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 122/336 (36%), Positives = 193/336 (57%), Gaps = 15/336 (4%)

Query: 24  PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRE 83
           P+ IQ   +PL+   HDV  IA+TG+GKT ++ LP +  L+  +  V  PR L++ PTRE
Sbjct: 125 PSSIQQAIMPLIFDGHDVIAIAETGSGKTLAYALPGIMHLQ-AQPPVAGPRILVMAPTRE 183

Query: 84  LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           LA Q+   ++ + K        L GGIP   Q   L     V+I TPGR+LD F +G L 
Sbjct: 184 LAQQIQTQYDLFAK-----TCCLYGGIPKPHQYVSLSETPQVIIATPGRLLD-FIKGGLT 237

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL-QNP 202
           + +I  +V+DEADRMLDMGF   I+++   V   RQTL FSAT   E+Q+++ +   Q+P
Sbjct: 238 LKSITQVVLDEADRMLDMGFEDQIRDVLKEVRKDRQTLFFSATWPQEVQRLANSLCSQDP 297

Query: 203 KRIEVNTP--SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVN 260
             +++     S      +   +A   ++ +   L++   Q +D  K  ++FC +K +   
Sbjct: 298 IFLQLGERGLSVNKNITQSVIIAGGNKFEQ---LIEYFNQIKD--KKVLVFCQKKIDTQK 352

Query: 261 LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNF 320
           L + L + G +   +HG++ Q  R  I+ +F+ G +  ++ ++LA+RGLD+ DV  V N+
Sbjct: 353 LEYRLSQHGVNARYLHGDLKQNQRDYIMQDFRNGKVNCLITTNLASRGLDVSDVDVVINY 412

Query: 321 DVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           D P   E+YIHRIGRTGRAG+ G+A + +   D+ +
Sbjct: 413 DFPENIEDYIHRIGRTGRAGKKGEALSFIQPRDLDY 448


>gi|332233583|ref|XP_003265983.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 2
           [Nomascus leucogenys]
          Length = 577

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 195/344 (56%), Gaps = 14/344 (4%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 156 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKE 215

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 216 LQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 275

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 276 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 335

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   V    Q+SK+  L++ L    D 
Sbjct: 336 TFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQT-VLQVGQFSKREKLVEILRNIGD- 393

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 394 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 452

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A + 
Sbjct: 453 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISF 496


>gi|261207791|ref|ZP_05922476.1| helicase [Enterococcus faecium TC 6]
 gi|289566243|ref|ZP_06446675.1| ATP-dependent RNA helicase YqfR [Enterococcus faecium D344SRF]
 gi|294616582|ref|ZP_06696358.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1636]
 gi|260078174|gb|EEW65880.1| helicase [Enterococcus faecium TC 6]
 gi|289161950|gb|EFD09818.1| ATP-dependent RNA helicase YqfR [Enterococcus faecium D344SRF]
 gi|291590532|gb|EFF22265.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1636]
          Length = 449

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 131/358 (36%), Positives = 204/358 (56%), Gaps = 16/358 (4%)

Query: 13  VCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR 71
           +  VL A G+ +PT +Q + IPL+ +  ++ G +QTGTGKT +F+LP+    EK  A   
Sbjct: 13  INEVLTAKGFKQPTEVQERLIPLIAKGKNIIGQSQTGTGKTHTFLLPLF---EKINAEKE 69

Query: 72  MPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQ-NKKLERGADVLIC 128
             + +I  P+RELAAQ+ +   +  K     + V+  +GG   + Q N+   +   V++ 
Sbjct: 70  EVQVVITAPSRELAAQIYEAATQIAKFSTPEIRVSNFVGGTDKQRQLNRLHHQQPQVVVG 129

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I S +P   Q L+FSAT+ 
Sbjct: 130 TPGRILDMMNEQALKIHTAFAFVVDEADMTLDMGFLNEVDQIASRLPEKLQFLVFSATIP 189

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN- 247
           ++L+     +++NP   E+   +  +E IE+  ++T  +   +  ++ QLL    T+ + 
Sbjct: 190 EKLRPFLRKYMENPIIEEIKPKAVISEDIENWLISTKGK--DENQMIYQLL----TIGHP 243

Query: 248 --GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F N K++V  +   L+ QG  V  IHG+I  R R +++   +    Q +VA+DLA
Sbjct: 244 YLAIVFANTKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLEYQYVVATDLA 303

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           ARG+DI  V HV N ++P   + +IHR+GRTGR G  G A TL +  D + IDAIEKL
Sbjct: 304 ARGIDIEGVSHVINAEIPEDLDFFIHRVGRTGRNGLKGTAITLYSPNDEQAIDAIEKL 361


>gi|49483807|ref|YP_041031.1| helicase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425683|ref|ZP_05602107.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257428344|ref|ZP_05604742.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430981|ref|ZP_05607361.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257433669|ref|ZP_05610027.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436583|ref|ZP_05612627.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282904140|ref|ZP_06312028.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus C160]
 gi|282905967|ref|ZP_06313822.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282908877|ref|ZP_06316695.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282911196|ref|ZP_06318998.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282914365|ref|ZP_06322151.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M899]
 gi|282919334|ref|ZP_06327069.1| helicase [Staphylococcus aureus subsp. aureus C427]
 gi|282924659|ref|ZP_06332327.1| helicase [Staphylococcus aureus subsp. aureus C101]
 gi|283958322|ref|ZP_06375773.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293510456|ref|ZP_06669162.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus M809]
 gi|293530996|ref|ZP_06671678.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M1015]
 gi|295428136|ref|ZP_06820768.1| helicase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590898|ref|ZP_06949536.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|49241936|emb|CAG40630.1| putative helicase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257271377|gb|EEV03523.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257275185|gb|EEV06672.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278411|gb|EEV09047.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257281762|gb|EEV11899.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283934|gb|EEV14057.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282313494|gb|EFB43889.1| helicase [Staphylococcus aureus subsp. aureus C101]
 gi|282317144|gb|EFB47518.1| helicase [Staphylococcus aureus subsp. aureus C427]
 gi|282321546|gb|EFB51871.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M899]
 gi|282324891|gb|EFB55201.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282327141|gb|EFB57436.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282331259|gb|EFB60773.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282595758|gb|EFC00722.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus C160]
 gi|283790471|gb|EFC29288.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|290920264|gb|EFD97330.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291466820|gb|EFF09340.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus M809]
 gi|295128494|gb|EFG58128.1| helicase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575784|gb|EFH94500.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312437973|gb|ADQ77044.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195460|gb|EFU25847.1| putative helicase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 448

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 126/381 (33%), Positives = 205/381 (53%), Gaps = 13/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ + IP +L+R ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++   + ++ P+ +++ PTRELA Q+ D      +    ++V + IGG   E   ++   
Sbjct: 66  ID---SEIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRCNA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L ++    LVIDEAD M+D+G I  +  I + +       
Sbjct: 123 QPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNANIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+ ++LQ     +L +P+ + V++     + IE   + T     K  A +++ L  
Sbjct: 183 VFSATIPEQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPT-----KGAAKVEKTLNL 237

Query: 242 QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            D +     I+FCN + N  +L  SL + G  V  IHG +  R R + +   +    Q +
Sbjct: 238 IDILNPYLCIVFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYV 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +ASDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  
Sbjct: 298 IASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISL 357

Query: 360 IEK--LIEKKVDWLNGDLSSL 378
           IE    +   VD  +G+L  +
Sbjct: 358 IEDRGFVFNTVDIKDGELKEV 378


>gi|2137271|pir||I49638 probable RNA helicase protein - mouse (fragment)
 gi|286075|dbj|BAA03584.1| Drosophila vasa homologue [Mus musculus]
          Length = 637

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 125/350 (35%), Positives = 196/350 (56%), Gaps = 14/350 (4%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM----- 72
           AGY K TP+Q  TIP+VL   D+   AQTG+GKTA+F+LP+L  ++  G    R      
Sbjct: 220 AGYTKLTPVQKYTIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQE 279

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
           P  +I+ PTREL  Q+     K+     +   ++ GG  F    +++ +G ++L  TPGR
Sbjct: 280 PECIIVAPTRELINQIYLEARKFSFGTCVISVVIYGGTQFGHSVRQIVQGCNILCATPGR 339

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSATMT 188
           ++D   + K+ +  ++ LV+DEAD MLDMGF P I+ + S          QTLLFSAT  
Sbjct: 340 LMDIIGKEKIGLKQVKYLVLDEADSMLDMGFAPEIKKLISCPGMPSKEQHQTLLFSATFP 399

Query: 189 DELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
           +E+Q+++ +FL+ N   + V         ++   +    QY K+ +LL+      D  + 
Sbjct: 400 EEIQRLAGDFLKSNYLFVAVGQVGGACRDVQQTILQV-GQYQKEKSLLRFYENIGD--ER 456

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +AAR
Sbjct: 457 TMVFVETKKKADFIATFLCQEKISSTSIHGDREQREREQALGDFRCGKCPVLVATSVAAR 516

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           GLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    +   H+
Sbjct: 517 GLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTDSDNHL 566


>gi|18400210|ref|NP_566469.1| EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1);
           ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|1170503|sp|P41376|IF4A1_ARATH RecName: Full=Eukaryotic initiation factor 4A-1; Short=eIF-4A-1;
           AltName: Full=ATP-dependent RNA helicase eIF4A-1;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 4
 gi|16554|emb|CAA46188.1| eukaryotic translation initiation factor 4A-1 [Arabidopsis
           thaliana]
 gi|11994363|dbj|BAB02322.1| eukaryotic translation initiation factor; RNA helicase [Arabidopsis
           thaliana]
 gi|14594805|emb|CAC43288.1| translation initiation factor eIF-4A1 [Arabidopsis thaliana]
 gi|15293047|gb|AAK93634.1| putative Eukaryotic initiation factor 4A [Arabidopsis thaliana]
 gi|15450486|gb|AAK96536.1| AT3g13920/MDC16_4 [Arabidopsis thaliana]
 gi|20259055|gb|AAM14243.1| putative eukaryotic initiation factor 4A [Arabidopsis thaliana]
 gi|20466101|gb|AAM19972.1| AT3g13920/MDC16_4 [Arabidopsis thaliana]
 gi|22655066|gb|AAM98124.1| unknown protein [Arabidopsis thaliana]
 gi|23397033|gb|AAN31802.1| putative eukaryotic initiation factor 4A [Arabidopsis thaliana]
 gi|332641917|gb|AEE75438.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 412

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 200/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 41  FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    + +    L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 101 LDFSLIQCQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAG 157

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 158 VHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 217

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 218 FSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLA 277

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 278 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 332

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V ++D + +  
Sbjct: 333 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFD 392

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     V+ L  +++ L
Sbjct: 393 IQKFYNVVVEELPSNVADL 411


>gi|293377452|ref|ZP_06623654.1| putative ATP-dependent RNA helicase DbpA [Enterococcus faecium
           PC4.1]
 gi|292643970|gb|EFF62078.1| putative ATP-dependent RNA helicase DbpA [Enterococcus faecium
           PC4.1]
          Length = 425

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 128/365 (35%), Positives = 204/365 (55%), Gaps = 9/365 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F      P +  A+   G+ +PT +Q + IPL+ +  ++ G +QTGTGKT +F+LP+  
Sbjct: 3   NFDIFRFKPFINEALAAKGFKQPTEVQERLIPLIAKGKNIIGQSQTGTGKTHTFLLPLFE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQ-NKK 118
            +   +  V++   +I  P+RELAAQ+ +   +  K     + V+  +GG   + Q N+ 
Sbjct: 63  KINADKEEVQV---VITAPSRELAAQIYEAATQIAKFSTPEIRVSNFVGGTDKQRQLNRL 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +   V++ TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I S +P   
Sbjct: 120 HHQQPQVVVGTPGRILDMMNEQALKIHTAFAFVVDEADMTLDMGFLNEVDQIASRLPEKL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+     +++NP   E+   +  +E IE+  ++T  +   +  ++ QL
Sbjct: 180 QFLVFSATIPEKLRPFLRKYMENPIIEEIKPKAVISEDIENWLISTKGK--DENQMIYQL 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L         I+F N K++V  +   L+ QG  V  IHG+I  R R +++   +    Q 
Sbjct: 238 LTIGHPYL-AIVFANTKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLEYQY 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N ++P   + +IHR+GRTGR G  G A TL +  D + ID
Sbjct: 297 VVATDLAARGIDIEGVSHVINAEIPEDLDFFIHRVGRTGRNGLKGTAITLYSPNDEQAID 356

Query: 359 AIEKL 363
           AIEKL
Sbjct: 357 AIEKL 361


>gi|41407579|ref|NP_960415.1| hypothetical protein MAP1481c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395932|gb|AAS03798.1| hypothetical protein MAP_1481c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 497

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 125/363 (34%), Positives = 194/363 (53%), Gaps = 10/363 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+  ++V A+   G   P PIQ +T+P  L   DV G  +TG+GKT +F +P++  
Sbjct: 50  FADLGVPARIVDALTARGITSPFPIQAETLPDTLAGRDVLGRGKTGSGKTLAFSIPLVGR 109

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G  R   P  L+L PTRELA Q+    E       L V+ + GG+    Q   L+ G
Sbjct: 110 LSTGNRRPARPTGLVLAPTRELATQITATLEPLAAACGLRVSTIFGGVSQHRQVTALKAG 169

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++  PGR+ D   +  + +  + + VIDEAD M D+GF+P +  I +  P   Q LL
Sbjct: 170 VDIVVACPGRLEDLMRQRLITLEAVRVTVIDEADHMADLGFLPGVTRILAATPNDGQRLL 229

Query: 183 FSATMTDELQKVSENFLQNP---KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           FSAT+ + + K+   FL++       E N+P S  E   H F     Q  K+  L+ +L 
Sbjct: 230 FSATLDNGVDKLVTRFLRDAVLHSVDEANSPVS--EMTHHVFHVDSVQAKKE--LVHRL- 284

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +  T +  I+F   K     +   L + G     +HGN+ Q +R + L+ F  G+ +++
Sbjct: 285 -ASGTGRR-ILFLRTKHQARKVARQLTESGVPSVDLHGNLSQPARERNLAMFAAGSARVL 342

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+ + +V  V + D P+  ++Y+HR GRT RAG  G   T+V  E  +H  A
Sbjct: 343 VATDIAARGVHVDEVELVVHIDPPSEHKSYLHRSGRTARAGSAGDVVTVVLPEQREHTRA 402

Query: 360 IEK 362
           + +
Sbjct: 403 LMR 405


>gi|50292537|ref|XP_448701.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661117|sp|Q6FM43|PRP28_CANGA RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|49528013|emb|CAG61664.1| unnamed protein product [Candida glabrata]
          Length = 582

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/373 (35%), Positives = 208/373 (55%), Gaps = 30/373 (8%)

Query: 20  GYVKPTPIQIKTIPLVLQRH-----DVCGIAQTGTGKTASFVLPMLTILEKGRAR----- 69
           G+ +PT IQ  TIP  +  +     D+ GIA TG+GKT +F +P+L  L+   AR     
Sbjct: 190 GFDEPTAIQRITIPNAISSNKSVPRDILGIASTGSGKTLAFSIPILARLDALPARPVNLK 249

Query: 70  -VRMPRTLILEPTRELAAQVADNFEK----YGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
            +  P  L+L PTRELA Q++    +    +    NL    ++GG      +  L  G D
Sbjct: 250 TLDGPLALVLVPTRELAQQISQEINRLLSAWENKKNLNAVSIVGGHSMSDISHTLRNGCD 309

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQT 180
           +LI TPGR+LD  +   +++N I+ LV+DEADRM+D+GF   +++I S +       RQT
Sbjct: 310 ILIATPGRLLDVLDNHLVVLNKIQSLVLDEADRMIDLGFEDQMKSILSHLMADELAARQT 369

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LF+AT++  ++ +++ +L+NP  + V +   + + +    V       KK + L+    
Sbjct: 370 MLFTATLSSSVESIAKGYLKNPLHVSVGSRWDSDKPLITQVVRHTGDDDKKLSFLKD--- 426

Query: 241 SQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             D +KNG   IIF N K+    L   L  + F++  +HG+  Q  R   +   K GT  
Sbjct: 427 --DLIKNGLPAIIFINYKETADWLTLRLSDR-FNIVTLHGSKSQSQRESAIQKLKSGTAN 483

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT-LVAKEDIKH 356
           +++A+++AARGLDIPDV  V NF +  + ++YIHRIGRTGRAG+ G A T L  +ED + 
Sbjct: 484 VLIATNVAARGLDIPDVALVVNFQMSKKFDDYIHRIGRTGRAGKTGIAVTYLTGEEDPQL 543

Query: 357 IDAIEKLIEKKVD 369
           I  + K + K VD
Sbjct: 544 IKQLAKYV-KDVD 555


>gi|224285260|gb|ACN40356.1| unknown [Picea sitchensis]
          Length = 411

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 201/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    Q  DV   AQ+GTGKTA+F   +L  
Sbjct: 40  FDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCQGLDVIQQAQSGTGKTATFCSGILQQ 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     V   + L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 100 LDYN---VPECQALVLAPTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLRILQAG 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 157 VHVVVGTPGRVYDMLRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPSNLQVGV 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+ NP RI V     T E I+  +V    +  K    C L + L 
Sbjct: 217 FSATMPPEALEITRKFMNNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLA 276

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 277 ITQ-----SVIFINTRRKVDMLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 331

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   + K+D + +  
Sbjct: 332 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFITKDDERMLQD 391

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     V+ L  +++ L
Sbjct: 392 IQRFYNVVVEELPNNVADL 410


>gi|28958131|gb|AAH47455.1| DDX4 protein [Homo sapiens]
          Length = 690

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 124/353 (35%), Positives = 198/353 (56%), Gaps = 14/353 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 269 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKE 328

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  ++     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 329 LQEPECIIVAPTRELVNKIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 388

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 389 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 448

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   V    Q+SK+  L++ L    D 
Sbjct: 449 TFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQT-VLQVGQFSKREKLVEILRNIGD- 506

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 507 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 565

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +    E   H+
Sbjct: 566 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHL 618


>gi|194864582|ref|XP_001971010.1| GG14669 [Drosophila erecta]
 gi|190652793|gb|EDV50036.1| GG14669 [Drosophila erecta]
          Length = 827

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 200/357 (56%), Gaps = 6/357 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   GY  PTPIQ KTIPL+L+  DV  +A+TG+GKTA F++P+   
Sbjct: 41  FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++ R   +  R LIL PTRELA Q     ++ G+   L   L++GG   ++Q   +   
Sbjct: 101 LQR-REPTKGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTC 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR L       L +N+IE +V DEADR+ +MGF   +      +P +RQT++
Sbjct: 160 PDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQTVM 219

Query: 183 FSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           FSAT+   L + +   L +P   R++V +    A  ++  +     +Y+    LL+ ++ 
Sbjct: 220 FSATLPKLLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYVIP 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F   + +V  + + L + G S  +++ ++D  +R    + F    + +++
Sbjct: 280 VQS---QTVVFAGTQHHVELISYILTEAGISNSSVYSSLDPAARKINTAKFVNKKVSVLI 336

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +D+AARG+DIP +  V N   P + + ++HR+GR  RAGR G A+++V+ +D  H+
Sbjct: 337 VTDVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHL 393


>gi|57651951|ref|YP_186455.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161365|ref|YP_494213.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195366|ref|YP_500170.1| hypothetical protein SAOUHSC_01659 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221673|ref|YP_001332495.1| ATP-dependent RNA helicase DEAD/DEAH box family protein
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161509787|ref|YP_001575446.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140022|ref|ZP_03564515.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253732211|ref|ZP_04866376.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|258450613|ref|ZP_05698675.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A5948]
 gi|262051220|ref|ZP_06023444.1| hypothetical protein SA930_1651 [Staphylococcus aureus 930918-3]
 gi|282920107|ref|ZP_06327832.1| ATP-dependent RNA helicase [Staphylococcus aureus A9765]
 gi|284024617|ref|ZP_06379015.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848589|ref|ZP_06789335.1| ATP-dependent RNA helicase [Staphylococcus aureus A9754]
 gi|304380853|ref|ZP_07363513.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|57286137|gb|AAW38231.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus COL]
 gi|87127339|gb|ABD21853.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202924|gb|ABD30734.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150374473|dbj|BAF67733.1| ATP-dependent RNA helicase DEAD/DEAH box family protein
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368596|gb|ABX29567.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724000|gb|EES92729.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|257861771|gb|EEV84570.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A5948]
 gi|259160857|gb|EEW45877.1| hypothetical protein SA930_1651 [Staphylococcus aureus 930918-3]
 gi|269941048|emb|CBI49432.1| putative helicase [Staphylococcus aureus subsp. aureus TW20]
 gi|282594455|gb|EFB99440.1| ATP-dependent RNA helicase [Staphylococcus aureus A9765]
 gi|294824615|gb|EFG41038.1| ATP-dependent RNA helicase [Staphylococcus aureus A9754]
 gi|302751389|gb|ADL65566.1| ATP-dependent RNA helicase DEAD/DEAH box family protein
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340580|gb|EFM06514.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|315198747|gb|EFU29075.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140557|gb|EFW32411.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144094|gb|EFW35863.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314234|gb|AEB88647.1| ATP-dependent RNA helicase DEAD/DEAH box family protein
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329728429|gb|EGG64866.1| DEAD-box ATP-dependent RNA helicase CshB [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329733171|gb|EGG69508.1| DEAD-box ATP-dependent RNA helicase CshB [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 448

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/381 (33%), Positives = 204/381 (53%), Gaps = 13/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ + IP +L+R ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++   + ++ P+ +++ PTRELA Q+ D      +    ++V + IGG   E   ++   
Sbjct: 66  ID---SEIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRCNA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L ++    LVIDEAD M+D+G I  +  I + +       
Sbjct: 123 QPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNANIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +LQ     +L +P+ + V++     + IE   + T     K  A +++ L  
Sbjct: 183 VFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFYLIPT-----KGAAKVEKTLNL 237

Query: 242 QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            D +     IIFCN + N  +L  SL + G  V  IHG +  R R + +   +    Q +
Sbjct: 238 IDILNPYLCIIFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYV 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +ASDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  
Sbjct: 298 IASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISL 357

Query: 360 IEK--LIEKKVDWLNGDLSSL 378
           IE    +   VD  +G+L  +
Sbjct: 358 IEDRGFVFNTVDIKDGELKEV 378


>gi|16079569|ref|NP_390393.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310438|ref|ZP_03592285.1| hypothetical protein Bsubs1_13756 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314761|ref|ZP_03596566.1| hypothetical protein BsubsN3_13672 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319684|ref|ZP_03600978.1| hypothetical protein BsubsJ_13593 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323961|ref|ZP_03605255.1| hypothetical protein BsubsS_13727 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1731006|sp|P54475|CSHB_BACSU RecName: Full=DEAD-box ATP-dependent RNA helicase CshB
 gi|1303839|dbj|BAA12495.1| YqfR [Bacillus subtilis]
 gi|2634947|emb|CAB14444.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 438

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 130/377 (34%), Positives = 206/377 (54%), Gaps = 16/377 (4%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P ++ AV   G+ +PT IQ + IP VL++  V G +QTGTGKT +++LP+L  ++  +
Sbjct: 11  LKPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLNKIDPAK 70

Query: 68  ARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
             V++   +I  PTRELA Q+   A    +  +   +     IGG   +    KL+    
Sbjct: 71  DVVQV---VITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLKIQPH 127

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGRI D      L ++  E LVIDEAD MLDMGF+  +  I S +P   Q L+FS
Sbjct: 128 LVVGTPGRIADLIKEQALSVHKAESLVIDEADLMLDMGFLADVDYIGSRMPEDLQMLVFS 187

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT+ ++L+   + +++NPK   V     TA  IEH  + +  ++  K  LL  ++   + 
Sbjct: 188 ATIPEKLKPFLKKYMENPKYAHVEPKQVTAAKIEHILIPS--KHRDKDKLLFDIMSHLNP 245

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
              GI+F N K    ++   L  +G  +  +HG +  R R K++    +     ++A+DL
Sbjct: 246 YL-GIVFANTKNTADHIAQYLTGKGMKIGLLHGGLTPRERKKVMKQINDLEFTYIIATDL 304

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL- 363
           AARG+DI  V HV N+++P+  + Y+HR+GRT RAG  G+A T+    D   +  +EK+ 
Sbjct: 305 AARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQAMTIYELTDEDALVRLEKMG 364

Query: 364 IE------KKVDWLNGD 374
           IE      +K +W  GD
Sbjct: 365 IEFEYLELEKGEWKKGD 381


>gi|296421505|ref|XP_002840305.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636520|emb|CAZ84496.1| unnamed protein product [Tuber melanosporum]
          Length = 472

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 133/377 (35%), Positives = 212/377 (56%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  + L P+++  +   G+ +P+ IQ + I  V+   DV   AQ+GTGKTA+F    ++
Sbjct: 100 NFDSMDLKPELLRGIYAYGFERPSAIQQRAILPVINNRDVIAQAQSGTGKTATF---SIS 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+K    V+  + LIL PTRELA Q+       G   N+     IGG       K L+ 
Sbjct: 157 VLQKIDLSVKQCQALILAPTRELAQQIQKVVVAIGDFMNVECHACIGGTVVREDMKILQD 216

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P + Q +
Sbjct: 217 GVHVVVGTPGRVHDVIQRRALKTDAIKLFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVV 276

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++
Sbjct: 277 LLSATMPQDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKE-DWKLDTLSDLYET 335

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A
Sbjct: 336 V-TITQAVIFCNTRRKVDWLTEKLTARDFTVSAMHGDMDQHQRDLIMKEFRSGSSRVLIA 394

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 395 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 454

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 455 QFYSTQIEEMPMNVADL 471


>gi|325927717|ref|ZP_08188945.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
 gi|325541918|gb|EGD13432.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
          Length = 430

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 130/370 (35%), Positives = 193/370 (52%), Gaps = 18/370 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           D   L L P    A+  AG    TPIQ+  IP +L   D+   AQTG+GKT ++ LP+L 
Sbjct: 6   DLLSLQLQPVFESALARAGVHALTPIQVAMIPPMLAARDLIATAQTGSGKTLAYALPLLQ 65

Query: 62  ILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQN 116
             ++ +A  + PR L   IL PTREL AQVA             L +    GG     Q 
Sbjct: 66  --QRLQAPEQAPRVLGGLILVPTRELVAQVAQTLLSLAAALPRRLKIVAATGGEAINPQL 123

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GAD++I TPGR+LD      L ++ +  LV+DEADR+LD+GF   +  I +L+P 
Sbjct: 124 MALRGGADIVIATPGRLLDLVTHNALGLSQVSTLVLDEADRLLDLGFGAELDRILALLPA 183

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ++L SAT    +  +++  L++P RI  +     A +I    +A  A   ++  LL+
Sbjct: 184 QRQSVLVSATFPAAIASLAKRRLRDPLRITHDAMPEQAPSITQRAIAVDA--GQRTQLLR 241

Query: 237 QLLQSQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL     +++G    ++F   +     +   L K G +   +HG + Q  R + L  FK
Sbjct: 242 HLL-----LEHGWPQLLVFVASRHGADKVAEKLSKTGIAALPLHGELSQGRRERTLRAFK 296

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +  +Q++VA+DLA RG+DI  +  V N+D+P    +Y HRIGRT RAG  G A + V  +
Sbjct: 297 QADVQVLVATDLAGRGIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGVAISFVTAD 356

Query: 353 DIKHIDAIEK 362
             +    IEK
Sbjct: 357 SAQQWRLIEK 366


>gi|225560188|gb|EEH08470.1| ATP-dependent RNA helicase DBP8 [Ajellomyces capsulatus G186AR]
          Length = 539

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/388 (35%), Positives = 207/388 (53%), Gaps = 26/388 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL+P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F  P   
Sbjct: 110 SFASLGLAPWLVGSLSTMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAFAAP--- 166

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL+K          +IL PTRELA Q+ +  +      +L   L+ GG     Q   L +
Sbjct: 167 ILQKWAEDPFGIFAVILTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIALSQ 226

Query: 122 GADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSLV 174
              ++I TPGR+ DH           +N   ++V DEADR+L  G    +P ++   S +
Sbjct: 227 RPHIVIATPGRLADHITSSGADTICGLNRTRVVVFDEADRLLASGPGSMLPDVETCLSAL 286

Query: 175 P--FTRQTLLFSATMTDELQKVSENFLQNPKR------IEVNTPSSTAETIEHCFVATYA 226
           P    RQTLLF+AT+T E++ +    +  P         EV+T +    +I      TY 
Sbjct: 287 PPSTARQTLLFTATVTPEVRALKS--MPRPANKLPIFVTEVSTENKA--SIPPTLKQTYL 342

Query: 227 QY--SKKCALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
           Q   + + A L  L+ ++ ++ K  IIFCN+ K    +   L + G  V ++H  + Q  
Sbjct: 343 QVPLTHREAFLHTLISTEANSQKPAIIFCNRTKTADLVERMLRRLGHRVTSLHSLLPQSE 402

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   LS F+    +++VA+D+AARGLDIP V  V NFDVP   ++Y+HR+GRT RAGR G
Sbjct: 403 RTANLSRFRASAARILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGREG 462

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKK-VDW 370
           +A TLV + D++ + AIE  + +K V+W
Sbjct: 463 EAVTLVGQRDVQLVLAIEDRVGRKMVEW 490


>gi|145603147|ref|XP_361955.2| hypothetical protein MGG_04400 [Magnaporthe oryzae 70-15]
 gi|152032534|sp|A4QVP2|IF4A_MAGO7 RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|145011448|gb|EDJ96104.1| hypothetical protein MGG_04400 [Magnaporthe oryzae 70-15]
          Length = 396

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/376 (35%), Positives = 213/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L  +++  +   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F    +++
Sbjct: 25  FDEMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATF---SISV 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    V+  + LIL PTRELA Q+       G   N+     IGG       K L+ G
Sbjct: 82  LQKIDTNVKQCQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVRDDMKALQDG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + +++ V+DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 142 PQVVVGTPGRVHDMIQRRFLKTDGMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 202 LSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 260

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A+
Sbjct: 261 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIAT 319

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 320 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 379

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 380 FYSTQIEEMPMNVADL 395


>gi|295671282|ref|XP_002796188.1| ATP-dependent RNA helicase DBP8 [Paracoccidioides brasiliensis
           Pb01]
 gi|226284321|gb|EEH39887.1| ATP-dependent RNA helicase DBP8 [Paracoccidioides brasiliensis
           Pb01]
          Length = 543

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/384 (35%), Positives = 204/384 (53%), Gaps = 18/384 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL+P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F  P   
Sbjct: 114 SFATLGLAPWLVGSLSAMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAFAAP--- 170

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL+K          ++L PTRELA Q+ +  +      +L   L+ GG     Q   L +
Sbjct: 171 ILQKWSEDPLGIFAVVLTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIALSQ 230

Query: 122 GADVLICTPGRILDHFN---RGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLV 174
              V+I TPGR+ DH N   R  +  +N    +V+DEADR+L+ G    +P ++   S +
Sbjct: 231 RPHVVIATPGRLADHINSSGRDTICGLNRARFVVLDEADRLLESGPGSMLPDLETCLSAL 290

Query: 175 PFT--RQTLLFSATMTDELQ--KVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQY 228
           P +  RQTLLF+AT+T E++  K        P        +    TI      +Y     
Sbjct: 291 PPSTARQTLLFTATVTPEVRALKSMPRPASKPPIFVTEISTENQATIPRTLKQSYLLVPL 350

Query: 229 SKKCALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
           + + A L  LL ++ ++ K  IIFCN+ K    L   L + G    ++H  + Q  R   
Sbjct: 351 THREAFLHVLLSTEGNSSKAAIIFCNRTKTADLLERMLRRLGHRATSLHSLLPQSERTAN 410

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           LS F+     ++VA+D+AARGLDIP V  V NFDVP   ++Y+HR+GRT RAGR G+A T
Sbjct: 411 LSRFRASAAPILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGREGEAVT 470

Query: 348 LVAKEDIKHIDAIEKLIEKKV-DW 370
           LV + D++ + AIE  + +K+ +W
Sbjct: 471 LVGQRDVQLVLAIEDRVGRKMEEW 494


>gi|242784404|ref|XP_002480380.1| ATP dependent RNA helicase (Dbp8), putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218720527|gb|EED19946.1| ATP dependent RNA helicase (Dbp8), putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 538

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 138/385 (35%), Positives = 211/385 (54%), Gaps = 22/385 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L ++P +V ++      +PT IQ   IP +LQ  D  G ++TG+GKT +F +P   I
Sbjct: 110 FANLNVAPWLVKSLSTMAIRRPTAIQKSCIPEILQGKDCIGGSRTGSGKTIAFAVP---I 166

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K          ++L PTRELA Q+ + F+      +L   L+ GG     Q   L + 
Sbjct: 167 LQKWAEDPFGIFAVVLTPTRELALQIFEQFKAISAPQSLKPVLITGGTDMRPQAIALSQR 226

Query: 123 ADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSLVP 175
             V+I TPGR+ DH         + +N + ++V+DEADR+L  G    +P ++   S +P
Sbjct: 227 PHVIIATPGRLADHIRTSGEDTIVGLNRVRMIVMDEADRLLTSGHGSMLPDVETCLSALP 286

Query: 176 FT--RQTLLFSATMTDE---LQKVSENFLQNPKRI-EVNTPSSTAETIEHCFVATYAQY- 228
            +  RQTLLF+AT+T E   L+ V     + P  + E+ T       I      TY Q  
Sbjct: 287 PSSERQTLLFTATVTPEVRALKSVPRPANRPPIHVTEIGT--ENIAPIPPTLKQTYLQVP 344

Query: 229 -SKKCALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
            + + A L  LL ++ ++ K  IIFCN+ K    L   L +    V ++H  + Q  R  
Sbjct: 345 MTHREAFLHVLLSTEGNSSKPAIIFCNRTKTADLLERMLRRLSHRVTSLHSLLPQSERTA 404

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            LS F+    +L+VA+D+A+RGLDIP+V  V NFDVP   ++Y+HR+GRT RAGR G++ 
Sbjct: 405 NLSRFRASAARLLVATDVASRGLDIPNVSLVINFDVPRNPDDYVHRVGRTARAGRTGESV 464

Query: 347 TLVAKEDIKHIDAIEKLIEKK-VDW 370
           TLV + D++ + AIEK + ++ V W
Sbjct: 465 TLVGQRDVQLVLAIEKRVGRQMVQW 489


>gi|149182026|ref|ZP_01860512.1| YqfR [Bacillus sp. SG-1]
 gi|148850291|gb|EDL64455.1| YqfR [Bacillus sp. SG-1]
          Length = 434

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 194/361 (53%), Gaps = 6/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P +  A+   G+++PT IQ K IPL+ +     G +QTGTGKT S++LP+L  
Sbjct: 5   FEQYDFQPFINEAIERLGFIEPTEIQKKMIPLINRGESAIGQSQTGTGKTHSYLLPILNK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + +    V+    +I  PTRELA Q+     K      +T    IGG   +    KL+  
Sbjct: 65  INRNSQEVQ---AVITAPTRELAQQIYQEILKITNEEEITSRCFIGGTDKQRMIDKLKTQ 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRI D    G LL++  ++LV+DEAD MLDMGFI  +  I + +P   + L+
Sbjct: 122 PQIVVGTPGRINDLVKEGALLVHRADMLVVDEADLMLDMGFIFDVDQIAARMPEKLKILV 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++L+   + +++NP+   V     +A+ I+H  +   ++   K  LL   L S 
Sbjct: 182 FSATIPEKLKPFLKKYMENPQYAHVEPEHISAKNIKHILLPRKSR--NKDDLLYDALSSL 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     I+F N K     +   L  +G  V  IHG++  R R K++   +    Q +VA+
Sbjct: 240 NPYL-AIVFTNTKAKADEVADYLLSKGMKVGRIHGDLSPRERKKMMKQIRALEYQYIVAT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARG+DI  V H+ N+++P   + YIHR GRT RAG  G A T+    D   ++ +EK
Sbjct: 299 DLAARGIDIEGVSHIINYEIPGELDFYIHRTGRTARAGYSGIAVTIYEPSDEDALNQLEK 358

Query: 363 L 363
           +
Sbjct: 359 M 359


>gi|217972233|ref|YP_002356984.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217497368|gb|ACK45561.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 443

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/380 (36%), Positives = 209/380 (55%), Gaps = 16/380 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF----- 55
           + FA+LGL+  ++ A L A    PT +Q   IP  L   D+  +AQTG+GKT +F     
Sbjct: 13  LTFAELGLNLALLKA-LPATLAHPTKVQQLAIPASLAGRDLLALAQTGSGKTLAFGLPLL 71

Query: 56  -VLPMLTILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGG 109
             L +    +   A+   P   + L+L PTRELA QV +  +      + +L + LL GG
Sbjct: 72  QQLLLQQQTQLQGAKSVPPSNAQALVLVPTRELALQVTEALQTVASQLSASLNIQLLCGG 131

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +P E Q  +L     VL+ TPGR+LD   +  + +++I+ LV+DEADR+L+MGF P +Q 
Sbjct: 132 VPLEDQLAELAAKPQVLVATPGRLLDLCKQSHISLDSIKHLVLDEADRLLEMGFWPDVQK 191

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQN-PKRIEVNTPSSTAETIEHCFVATYAQY 228
           + + +P  +QT LFSAT+ + L  ++   L N P R+E +  +S A  IE        + 
Sbjct: 192 LMAFMPKLKQTSLFSATLPEALDTLAGKLLVNEPLRVEAHKVNSVAGEIEEQLYLVN-KG 250

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           SK  AL+  L Q Q      ++F + + +   +   L K G  V A+HG  DQ  R + L
Sbjct: 251 SKAQALIALLKQYQ--WPQVLVFISARDDADAVAKRLAKAGMKVAALHGEKDQAVRSQTL 308

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           ++FK   IQ++VA+DL ARG+ +  +  V N D+P  A  Y+HRIGRT RAG  G A +L
Sbjct: 309 ADFKANRIQVLVATDLMARGIHVDALPVVINLDLPMSAPVYVHRIGRTARAGEKGLAISL 368

Query: 349 VAKEDIKHIDAIEKLIEKKV 368
           V   ++  + AI  L  +++
Sbjct: 369 VCHGEMATLTAIRSLTAREL 388


>gi|321311997|ref|YP_004204284.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
 gi|320018271|gb|ADV93257.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis BSn5]
          Length = 438

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 131/377 (34%), Positives = 206/377 (54%), Gaps = 16/377 (4%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P ++ AV   G+ +PT IQ + IP VL++  V G +QTGTGKT +++LP+L  ++  +
Sbjct: 11  LKPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLNKIDPAK 70

Query: 68  ARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
             V++   +I  PTRELA Q+   A    +  +   +     IGG   +    KL+    
Sbjct: 71  DVVQV---VITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLKIQPH 127

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGRI D      L ++  E LVIDEAD MLDMGF+  +  I S +P   Q L+FS
Sbjct: 128 LVVGTPGRIADLIKEQALSVHKAESLVIDEADLMLDMGFLADVDYIGSRMPEDLQMLVFS 187

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT+ ++L+   + +++NPK   V     TA  IEH  + +  ++  K  LL  ++ S   
Sbjct: 188 ATIPEKLKPFLKKYMENPKYAHVEPKQVTAAKIEHILIPS--KHRDKDKLLFDIM-SHLN 244

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
              GI+F N K    ++   L  +G  +  +HG +  R R K++    +     ++A+DL
Sbjct: 245 PYLGIVFANTKNTADHIAQYLTGKGMKIGLLHGGLTPRERKKVMKQINDLEFTYIIATDL 304

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL- 363
           AARG+DI  V HV N+++P+  + Y+HR+GRT RAG  G+A T+    D   +  +EK+ 
Sbjct: 305 AARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQAMTIYELTDEDALVRLEKMG 364

Query: 364 IE------KKVDWLNGD 374
           IE      +K +W  GD
Sbjct: 365 IEFDYLELEKGEWKKGD 381


>gi|255544594|ref|XP_002513358.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223547266|gb|EEF48761.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 502

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/392 (34%), Positives = 213/392 (54%), Gaps = 8/392 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL+   V    + G  +PTP+Q   IP +L+  DV G+AQTG+GKTA+F LP+L  
Sbjct: 65  FSNLGLAEWAVRTCKELGMKRPTPVQAHCIPKILEGKDVLGLAQTGSGKTATFALPILHR 124

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     L++ PTRELA Q+A+ F   G   NL  A+++GG+    Q K L   
Sbjct: 125 LAEDPYGIF---ALVITPTRELAYQLAEQFRALGSCLNLRCAVVVGGMDKLTQAKTLMAR 181

Query: 123 ADVLICTPGRI---LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             V+I TPGR+   L+       + +  + LV+DEADR+LD+GF   ++ +   +P  RQ
Sbjct: 182 PHVVIATPGRVKVLLEDNPDIPSVFSKTKFLVLDEADRVLDVGFEDELRVVFQCLPKNRQ 241

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATMT  L+ + E         E      T +T++  +V    +  K   L+  L 
Sbjct: 242 TLLFSATMTSNLESLLEVSANKAYFYEAYEGFKTVDTLKQQYVLV-PKNVKDVYLVYILS 300

Query: 240 QSQDT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +D  +++ IIF +  +    L   LE+      A+H    Q  R+  L  FK G   +
Sbjct: 301 KMEDMGIRSAIIFVSTCRTCYLLSLLLEELEKEPAALHSFKSQSLRLSALRRFKSGQASI 360

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDIP V  V N+D+P    +Y+HR+GRT RAGR G A + +++ D   I 
Sbjct: 361 LIATDVASRGLDIPTVDLVVNYDLPRYPRDYVHRVGRTARAGRGGLAMSFISQNDFVLIR 420

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
            IE ++ K++       + +   + KI  A+H
Sbjct: 421 EIEAVLGKQLGEFECKENEVLSDITKIFKARH 452


>gi|326329874|ref|ZP_08196191.1| putative ATP-dependent RNA helicase [Nocardioidaceae bacterium
           Broad-1]
 gi|325952341|gb|EGD44364.1| putative ATP-dependent RNA helicase [Nocardioidaceae bacterium
           Broad-1]
          Length = 452

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/423 (31%), Positives = 212/423 (50%), Gaps = 12/423 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ LG+ P  + AVLD  G   PTPIQ  T+P  L   DV G  +TG+GKT +F+LP++ 
Sbjct: 6   FSALGV-PADLTAVLDHHGITSPTPIQAATLPDSLAGRDVLGRGRTGSGKTYAFLLPLVA 64

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L  G +A+   PR L+L PTREL  Q+ ++         L+V  + GG+    Q   L 
Sbjct: 65  RLAGGPKAKAGKPRALVLAPTRELVRQIEESLRPLATEAGLSVQTVFGGVGQNPQVVGLR 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GADV++  PGR+ D   +    +++IE+ V+DEAD M D+GF+P ++ + ++ P   Q 
Sbjct: 125 KGADVVLACPGRLEDLIGQRHADLSSIEVTVLDEADHMADLGFLPAVRRLLAMTPKGSQR 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+   +  + + FL  P   E ++  S    +EH  +   A+   +  +L  L  
Sbjct: 185 LLFSATLDKGINVLVKQFLSAPVVHEADSAQSPVAEMEHHVLHLSAR-EHRIPVLADLAA 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       ++F   K     +   L + G     +HG++ Q +R++ L  F  G    +V
Sbjct: 244 APGRT---VVFTRTKHGAKGVARQLGRAGIPAVELHGDLSQNARVRNLEAFHSGKATTLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   TL+  + +K +  +
Sbjct: 301 ATDIAARGIHVDDVTLVVHADPPAEHKAYLHRSGRTARAGASGTVVTLMLPDQVKDVRTL 360

Query: 361 E-----KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
                 K    +VD  +  +     P E+         R   P P +  G  + KK   +
Sbjct: 361 TRAAGIKPTTTRVDGPSHPILVELAPGERKPSRPFRPGRHPAPAPPRREGIRKPKKPPRA 420

Query: 416 QKS 418
            ++
Sbjct: 421 SRA 423


>gi|323448840|gb|EGB04734.1| hypothetical protein AURANDRAFT_70371 [Aureococcus anophagefferens]
          Length = 383

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 195/379 (51%), Gaps = 25/379 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+ +P+ IQ + I  ++   DV   +Q+GTGKTA F + ML +
Sbjct: 26  FEGMALREDLLRGIYAYGFERPSAIQQRAITPIVAGRDVIAQSQSGTGKTAVFCIAMLQV 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE      +M   L + PTRELA Q        G   N+     IGG       ++L+ G
Sbjct: 86  LESATNETQM---LTISPTRELAEQTQKVCLALGDYMNVQCHACIGGKSIGEDIRRLDYG 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L   N+++LVIDEAD ML+ GF   I +I   +P + Q +L
Sbjct: 143 VQIVSGTPGRVFDMIKRRNLRTRNLKMLVIDEADEMLNRGFKEQIYDIYRYLPPSTQVVL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SATM  E+  ++  F+  P R+ V     T E I+  FVA   +   +   C L   L 
Sbjct: 203 ISATMPQEVLDMTRKFMNEPVRVLVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 261

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+               V A+HG++ QR R  I++ F+ G  +++
Sbjct: 262 ----TITQAVIFCNTKRK--------------VSAMHGDMPQRERDAIMAEFRGGASRVL 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+  RGLD+  V  V  +D+PN  E YIHRIGR+GR GR G A   V  +D++ +  
Sbjct: 304 IATDIWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDVRILRD 363

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 364 IEQYYSTQIDEMPMNVADL 382


>gi|88854845|ref|ZP_01129511.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
 gi|88816006|gb|EAR25862.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
          Length = 757

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 130/380 (34%), Positives = 197/380 (51%), Gaps = 13/380 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+   +   +   G   P PIQ  TIP VL   DV G  +TG+GKT +F  P++  
Sbjct: 374 FLDLGIGSNISRQLASMGAESPFPIQAATIPDVLAGKDVLGRGKTGSGKTIAFGAPLVER 433

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L      K R   R PR LIL PTRELA Q+    +   ++  L    ++GG+P   Q  
Sbjct: 434 LMENNGGKDRQMGRKPRALILAPTRELAQQIDRTIQPIARSVGLFTTTIVGGVPQYKQVA 493

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG DV+I TPGR+ D   +G+L ++ +++ V+DEAD M D+GF+  +Q I       
Sbjct: 494 ALTRGVDVIIATPGRVEDLIEQGRLDLSQVKVTVLDEADHMCDLGFLEPVQRILRETSEG 553

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q LLFSAT+   +  + + FL +P   EV      + TI+H  +    +   K A+++Q
Sbjct: 554 GQKLLFSATLDKGVATLVKEFLVDPAVHEVAGEDQASSTIDHKVL--LIEQRDKRAIIKQ 611

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L  S  T K  ++F   +     +   L   G    ++HG+++Q  R + L     G + 
Sbjct: 612 L--SAGTGKT-LVFTRTRAFAEEMAEFLSMGGTPATSLHGDLNQSRRTRNLQMLTSGKVN 668

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+ + D+  V   D P   + Y+HR GRTGRAG+ G   TL+ +   + +
Sbjct: 669 VLVATDVAARGIHVDDISLVIQADAPEEYKTYLHRAGRTGRAGKAGTVVTLIPRNRRRKM 728

Query: 358 DAIEKLIE---KKVDWLNGD 374
           D +    E   + VD   GD
Sbjct: 729 DELLGRAEIDAESVDVAPGD 748


>gi|172056876|ref|YP_001813336.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171989397|gb|ACB60319.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 450

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 129/378 (34%), Positives = 214/378 (56%), Gaps = 13/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L P VV A+ DA   KPT IQ + IP  L+  D+ G +QTGTGKT SF+LP   I
Sbjct: 4   FSHFDLHPFVVEALEDARIKKPTDIQSRIIPAALKGRDIIGQSQTGTGKTLSFLLP---I 60

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKY---GKNYNLTVALLIGGIPFEAQNKKL 119
           ++     ++  + +I+ PTRELA Q+ +  +       +Y +  +L+ GG+  E Q  ++
Sbjct: 61  VQNVNPELQEMQAIIVAPTRELAWQIHEELKSILVKQPDY-IKTSLITGGMDRERQIGRV 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    ++I TPGRILD F    L  + ++  +IDEAD+MLDMGF+P +  I   +P   Q
Sbjct: 120 KVSPQIVIGTPGRILDLFKEQALKPHFVKHYIIDEADQMLDMGFLPEVDRIAQALPEKLQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++FSAT+ ++LQ   + ++ NP+   V+    TA+ I H  V    ++  +  L  +L 
Sbjct: 180 MMVFSATIPEKLQPFLKKYMNNPRYAHVDPKQQTAKKIVHHTVPV--KHRDRSDLTLKLA 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++ +     ++F N K   + L     + G +V ++HG++  R R + +    E   Q +
Sbjct: 238 KALNPY-ICLVFTNTKTEAIELEALFLEAGLNVGSLHGDLPARRRKQAIKEINEAKYQYV 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DLAARG+DI  V HV N  +P   + Y+HR+GRTGR  + G A+TL   ED ++  +
Sbjct: 297 IVTDLAARGIDISGVSHVINHGIPKDLDFYVHRVGRTGRVDQDGLAYTLF--EDHEN-GS 353

Query: 360 IEKLIEKKVDWLNGDLSS 377
           I +L ++ ++++N D+ S
Sbjct: 354 INRLEDRGIEFINVDVKS 371


>gi|251783115|ref|YP_002997418.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391745|dbj|BAH82204.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323127866|gb|ADX25163.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 447

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 204/366 (55%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ + G+V PT +Q + IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDYHFKQYIQQALEEIGFVNPTEVQQRLIPIVNSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKK 118
             L++ +A V++   ++  P+RELA Q+ D  ++  K+   ++ +A  +GG     Q +K
Sbjct: 61  EKLDEAKAEVQV---VVTAPSRELATQIFDACKQIAKHSPKDIRLANYVGGTDKLRQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+ G   ++I TPGRI D    G L ++     V+DEAD  +DMGF+  +  I + +P +
Sbjct: 118 LKSGQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASLPKS 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  V+T  +  K   +L+ 
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVIEQIKTETVIADTIDNWLVSTKGR-DKNGQILEI 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   Q  M   ++F N K+   +L   L   G  V  IHG I  R R +I++  K+   +
Sbjct: 237 LKTMQPYM--AMLFVNTKERADDLHAFLVANGLKVAKIHGGIPPRERKRIMNQVKKLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 KELEKM 360


>gi|118344314|ref|NP_001071981.1| zinc finger protein [Ciona intestinalis]
 gi|92081542|dbj|BAE93318.1| zinc finger protein [Ciona intestinalis]
          Length = 627

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 130/361 (36%), Positives = 195/361 (54%), Gaps = 17/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+     ++  +      KPTPIQ + IP+VL   D+ GIA TG+GKT  F LP+L  
Sbjct: 188 FRDMKFPKPIIIGLKKKHIRKPTPIQTQGIPVVLSGRDMIGIAFTGSGKTLVFTLPLLMF 247

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNY------NLTVALLIGGIP 111
             +   ++       P  LI+ P+RELA Q       Y K+       +L +AL IGGIP
Sbjct: 248 CIEQEKKLPFLQNEGPYGLIVCPSRELARQTHQVMSYYAKHLEGGGLPSLRIALCIGGIP 307

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            +     + +G   +I TPGR++D  N+  + +     L +DEADRM+DMGF   ++ I 
Sbjct: 308 AKETVNIIRKGCHAVIATPGRLMDMLNKKMMNLGVCRFLCLDEADRMIDMGFEEDVRTIF 367

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q  + + L  P  + VN   + A +++   +    +Y K 
Sbjct: 368 SYFKGQRQTLLFSATMPKKIQNFARSALVCP--VTVNVGRAGAASLD---IIQEVEYVKD 422

Query: 232 CALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            A +  LL   Q T    ++F  +KK+V ++   L  +G    AIHG  DQ  R + +  
Sbjct: 423 EAKVVHLLNCLQKTSPPVLVFAQKKKDVDDIHEYLLLKGVEAVAIHGGKDQEERSRAVDL 482

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+     ++VA+D+A++GLD   + HV N+D+P+  ENY+HRIGRTGR+G  G A T + 
Sbjct: 483 FRTREKDVLVATDIASKGLDFEGIKHVLNYDMPDDIENYVHRIGRTGRSGCTGIATTFIN 542

Query: 351 K 351
           K
Sbjct: 543 K 543


>gi|332233581|ref|XP_003265982.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 1
           [Nomascus leucogenys]
          Length = 693

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 195/344 (56%), Gaps = 14/344 (4%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 272 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKE 331

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 332 LQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 391

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 392 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 451

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   V    Q+SK+  L++ L    D 
Sbjct: 452 TFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQT-VLQVGQFSKREKLVEILRNIGD- 509

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 510 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 568

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A + 
Sbjct: 569 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISF 612


>gi|306826916|ref|ZP_07460216.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           pyogenes ATCC 10782]
 gi|304430934|gb|EFM33943.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           pyogenes ATCC 10782]
          Length = 453

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 130/367 (35%), Positives = 204/367 (55%), Gaps = 11/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ + G+V PT +Q + IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDYHFKQYIQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL--LIGGIPFEAQNKK 118
             L++ +A V++   +I  P+RELA Q+ D  ++  K++   + L   +GG     Q +K
Sbjct: 61  EKLDETKAEVQV---VITAPSRELATQIFDACKQIAKHFQEEIRLANYVGGTDKLRQIEK 117

Query: 119 LERGAD--VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           L +G+   ++I TPGRI D    G L ++     V+DEAD  +DMGF+  +  I + +P 
Sbjct: 118 L-KGSQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASLPK 176

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  V+T  +  K   LL+
Sbjct: 177 SVQILVFSATIPQKLQPFLKKYLTNPVIEQIKTKTVIADTIDNWLVSTKGR-DKNGQLLE 235

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L   Q  M   ++F N K+   +L   L   G  V  IHG I  R R +I++  K+   
Sbjct: 236 ILKTMQPYM--AMLFVNTKERADDLHAFLTANGLKVAKIHGGIPPRERKRIMNQVKKLDF 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   
Sbjct: 294 EYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSD 353

Query: 357 IDAIEKL 363
           I  +EK+
Sbjct: 354 IKELEKM 360


>gi|224043524|ref|XP_002197738.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Taeniopygia
           guttata]
          Length = 817

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 133/372 (35%), Positives = 208/372 (55%), Gaps = 12/372 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  + ++ Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P L +
Sbjct: 13  FSDFPLSKKTLKGLQESQYRVVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALEL 72

Query: 63  LEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         LI+ PTRELA Q      K GKN+  +  L+IGG   + +++++  
Sbjct: 73  LYRQQWTSADGLGVLIISPTRELAYQTFKVLRKVGKNHEFSAGLIIGGKDLKEESERIHH 132

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++LICTPGR+L H +       +++++L++DEADR+LDMGF   +  I   +P  RQT
Sbjct: 133 -INMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENLPKKRQT 191

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT T  ++ ++   L++P+ + V+  +  ST  T++  +V    Q  +K  +L   
Sbjct: 192 LLFSATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLDQNYVVCELQ--QKVNMLYSF 249

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEK--QGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L++    K  I+F +  K V  L     K   G  V A+HG   Q  RM++ + F     
Sbjct: 250 LRTH-LKKKTIVFFSSCKEVQYLFRVFCKLQPGLPVLALHGKQQQMKRMEVYTCFVRKKA 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++ A+D+AARGLD P V  V  FD P  A  YIHR+GRT R    G+A  ++   + K 
Sbjct: 309 AVLFATDIAARGLDFPAVNWVIQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEKG 368

Query: 357 IDAIEKLIEKKV 368
           +  +E+L ++KV
Sbjct: 369 M--VEQLAQRKV 378


>gi|145974735|gb|ABQ00071.1| VASA [Fenneropenaeus chinensis]
          Length = 712

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 133/386 (34%), Positives = 212/386 (54%), Gaps = 18/386 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + L P ++  ++ AGY  PTP+Q  TIP V+   D+ G AQTG+GKTA+F+LPML  
Sbjct: 272 FQSMNLRPLLLENIVKAGYGCPTPVQKYTIPNVMNGRDIMGCAQTGSGKTAAFLLPMLHH 331

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           IL+             P  L++ PTRELA Q+     K+  +      +  GG       
Sbjct: 332 ILDNNCPSNAFEEPAQPTGLVICPTRELAIQIMREARKFSHSSVAKCCVAYGGAAGFHHL 391

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K +  G  +L+ TPGR+LD   +GK++ ++++ LV+DEADRMLDMGF+  I+ + +    
Sbjct: 392 KTIHSGCHILVATPGRLLDFVEKGKIVFSSLKYLVLDEADRMLDMGFLSSIKTVINHKTM 451

Query: 177 T----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSK 230
           T    R TL+FSAT  +E+Q+++  FL N   + V +  +    +  E   V  + + +K
Sbjct: 452 TPTADRITLMFSATFPNEIQELASAFLNNYLFVVVGSVGAANTDVKQEVLCVPKFEKKAK 511

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
              + +++L + D  K  ++F  QK+    +   L ++ F    +HG+  Q  R + L++
Sbjct: 512 LVEMCEEILINADDEKI-LVFVEQKRVADFVGTYLCEKNFRATTMHGDRYQAQREQALTD 570

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI  +G V N+D+P   + Y+HRIGRTGR G  G + +   
Sbjct: 571 FRTGVFNILVATAVAARGLDIKGIGVVVNYDLPKEIDEYVHRIGRTGRLGNRGLSISFYD 630

Query: 351 KEDIKHI--DAIEKLIEKKV---DWL 371
           +E    +  D ++ L E K    DWL
Sbjct: 631 EEADVCLTKDLVKVLSEAKQTVPDWL 656


>gi|58269456|ref|XP_571884.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134114169|ref|XP_774332.1| hypothetical protein CNBG3130 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256967|gb|EAL19685.1| hypothetical protein CNBG3130 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57228120|gb|AAW44577.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 615

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/361 (37%), Positives = 200/361 (55%), Gaps = 20/361 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVK-PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FAD+ + PK +   L A  +K PTPIQ++ +P      D+ GIA TG+GKT +F+LP + 
Sbjct: 182 FADMKI-PKPILGYLQAKGIKHPTPIQMQGLPTAFSGRDMIGIAFTGSGKTLAFILPAIM 240

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADN-------FEKYGKNYNLTVALLIGG 109
              +  A+V       P  LI+ P+RELA Q  +         ++ G    L   L IGG
Sbjct: 241 AALEMEAKVPFVRGEGPVGLIICPSRELARQTYEQCVAMCTVLKESGSYPELRSLLCIGG 300

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           I    Q   L +G  V++ TPGR++D  ++ KL  +N + L +DEADRM+DMGF   +++
Sbjct: 301 ISMADQADVLNKGVHVVVATPGRLIDMLDKRKLNADNCKYLCMDEADRMIDMGFEEDVRS 360

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I S   + RQTLLFSATM  ++Q  ++  L NP  I VN   + A  ++   V    +Y 
Sbjct: 361 IMSHFKYQRQTLLFSATMPRKIQDFAQQSLINP--ILVNVGRAGAANMD---VIQEVEYV 415

Query: 230 KKCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           K+ A +  LL+  Q T    IIF + K  V ++   L  +G    AIHG+  Q  R   +
Sbjct: 416 KQEAKMVYLLECLQKTPPPVIIFSDNKNEVDDIQEYLLLKGIEAVAIHGSKTQEEREYAI 475

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +FK G   +MVAS +A++GLD  ++ HV  + +P   E+Y+H IGRTGR+G+ G A T 
Sbjct: 476 RSFKTGAKDVMVASGVASKGLDFNEIQHVIVYSMPKEIEDYVHEIGRTGRSGKTGLATTF 535

Query: 349 V 349
           V
Sbjct: 536 V 536


>gi|328868659|gb|EGG17037.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 834

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 121/382 (31%), Positives = 202/382 (52%), Gaps = 34/382 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  L   ++ A+   GY KP+P+Q++ IP+ L   DV GIA+TG+GKTA+FV+PML  
Sbjct: 411 WRESSLPADMLEAIAKQGYEKPSPVQMQAIPVALSGRDVLGIAETGSGKTAAFVIPMLVY 470

Query: 63  LEKGRARVRM--------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           + K   + RM        P  +++ PTRELA Q+      +          L+GG P E 
Sbjct: 471 ISK---QPRMTKESEQDGPYAVVMAPTRELALQIEKEARVFANFLGYRTVALVGGQPIEE 527

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  +L +G +++I TPGR+ D   +  L++N    +V+DEAD M+DMGF   ++++   +
Sbjct: 528 QIYQLSKGCEIVIATPGRLNDCLEKRYLVLNQCNYVVLDEADMMIDMGFELQVESVLDAM 587

Query: 175 P---------------------FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
           P                       R T+L+SATM  +++++S  +L+ P  + +      
Sbjct: 588 PSAFLKSENEEEAEKQERDRHRVYRTTILYSATMPPKVERLSRKYLRRPVHVIIGEAGKA 647

Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            + I+   +   +  + K   +  LL S       I+F N+KK+   +   +++ G S  
Sbjct: 648 VDRIKQTVIFVKSD-NDKHQQMSSLLTSGPP-PPIIVFVNKKKHCEIIMEIVQECGLSST 705

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
           ++H    Q  R   L  FK+    +++A+D+A+RG+ +  V HV N+D+PN  E+Y HRI
Sbjct: 706 SLHSGRSQEQREMALEGFKKRKYGVLIATDVASRGIHVEGVTHVINYDMPNNIEDYTHRI 765

Query: 334 GRTGRAGRHGKAFTLVAKEDIK 355
           GRTGRAG  G A +L+  +D +
Sbjct: 766 GRTGRAGMEGLASSLITDKDTE 787


>gi|124810293|ref|XP_001348829.1| helicase 45 [Plasmodium falciparum 3D7]
 gi|23497730|gb|AAN37268.1| helicase 45 [Plasmodium falciparum 3D7]
 gi|83272531|gb|ABC00776.1| eIF4A-like [Plasmodium falciparum]
 gi|112434012|gb|ABI18354.1| eIF4A-like [Plasmodium falciparum]
          Length = 398

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 125/352 (35%), Positives = 192/352 (54%), Gaps = 13/352 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL+ K++  +   G+ KP+ IQ + I  +L  +D  G AQ+GTGKTA+FV+  L +
Sbjct: 25  FDALGLNEKLLRGIYSYGFEKPSAIQQRGIKPILNGYDTIGQAQSGTGKTATFVISSLQL 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +       +    LIL PTRELA Q+       G    +     +GG        KL++G
Sbjct: 85  INYDYVACQ---ALILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDIDKLKQG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPFTRQTL 181
             +++ TPGR+ D  ++  L ++ +++ ++DEAD ML  GF   I  +   LVP   Q  
Sbjct: 142 VHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVP-DIQVA 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQL 238
           LFSATM  E+ +++  F+++PK I V     T E I   +VA   +  K    C L + L
Sbjct: 201 LFSATMPQEILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLCDLYETL 260

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                T+   II+CN +K V  L   +  + F+V  +HG++DQ+ R  I+  F+ G+ ++
Sbjct: 261 -----TITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRV 315

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           +V +DL ARG+D+  V  V N+D+P   + YIHRIGR+GR GR G A   V 
Sbjct: 316 LVTTDLLARGIDVQQVSLVINYDLPASPDTYIHRIGRSGRFGRKGVAINFVT 367


>gi|149238864|ref|XP_001525308.1| hypothetical protein LELG_03236 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152013494|sp|A5E0U9|DBP8_LODEL RecName: Full=ATP-dependent RNA helicase DBP8
 gi|146450801|gb|EDK45057.1| hypothetical protein LELG_03236 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 444

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 143/413 (34%), Positives = 225/413 (54%), Gaps = 37/413 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYV-KPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG++ K +   L+A  +  PT IQ   IP +L+  D  G A+TG+GKT +F   MLT
Sbjct: 5   FKELGVA-KWLSESLEAMKIHSPTSIQSACIPEILKGRDCIGGAKTGSGKTIAFAALMLT 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +    +     LIL PTRELA Q+A+ F   G   N+ V +++GG  F  Q  +L++
Sbjct: 64  QWSQDPFGIF---GLILTPTRELALQIAEQFAALGALMNIKVCVVVGGEDFVKQTLELQK 120

Query: 122 GADVLICTPGRILDH-FNRGKLLMNN---IEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
               +I TPGR+ DH  N G+  ++    I+ LV+DEADR+L   F   +Q   +++P +
Sbjct: 121 KPHFVIATPGRLADHILNSGEETVSGLRRIKYLVLDEADRLLSNSFGSDLQRCFTILPPS 180

Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP---------------SSTAETIEHC 220
             RQTLLF+AT+TD ++      L++  R E   P                 T  T+ + 
Sbjct: 181 EKRQTLLFTATVTDAVKA-----LKDKPRAEGKLPVFLHQVDAGVDQIAIPKTLSTM-YV 234

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
           FV +Y + +   ++L+     + T    ++F N+      L   L K  F V ++H  + 
Sbjct: 235 FVPSYVKEAYLTSILKLPKYEEST---AVVFVNRTMTAEVLRRMLRKLEFKVASLHSEMP 291

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q  R   L  FK G  ++++A+D+A+RGLDIP V  V NFD+P   +++IHR+GRT RAG
Sbjct: 292 QTERTNSLHRFKAGAARILIATDVASRGLDIPTVELVVNFDIPADPDDFIHRVGRTARAG 351

Query: 341 RHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG--DLSSLNPPLEKIDIAQHN 391
           R G A +++ ++DI+ I++IE+ I KK++ L G  D   +N  L+K   A+  
Sbjct: 352 RKGDAISIIGEKDIERIESIEERINKKMELLEGVDDDKVINDSLQKATTAKRE 404


>gi|15924548|ref|NP_372082.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927138|ref|NP_374671.1| hypothetical protein SA1387 [Staphylococcus aureus subsp. aureus
           N315]
 gi|156979876|ref|YP_001442135.1| hypothetical protein SAHV_1545 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|255006344|ref|ZP_05144945.2| hypothetical protein SauraM_07745 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|13701356|dbj|BAB42650.1| SA1387 [Staphylococcus aureus subsp. aureus N315]
 gi|14247329|dbj|BAB57720.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156722011|dbj|BAF78428.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
          Length = 448

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/381 (33%), Positives = 204/381 (53%), Gaps = 13/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ + IP +L+R ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++   + ++ P+ +++ PTRELA Q+ D      +    ++V + IGG   E   ++   
Sbjct: 66  ID---SEIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRCNA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L ++    LVIDEAD M+D+G I  +  I + +       
Sbjct: 123 QPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNANIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +LQ     +L +P+ + V++     + IE   + T     K  A +++ L  
Sbjct: 183 VFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPT-----KGAAKVEKTLNL 237

Query: 242 QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            D +     IIFCN + N  +L  SL + G  V  IHG +  R R + +   +    Q +
Sbjct: 238 IDILNPYLCIIFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYV 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +ASDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  
Sbjct: 298 IASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISL 357

Query: 360 IEK--LIEKKVDWLNGDLSSL 378
           IE    +   VD  +G+L  +
Sbjct: 358 IEDRGFVFNTVDIKDGELKEV 378


>gi|327472726|gb|EGF18153.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK408]
          Length = 447

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 197/369 (53%), Gaps = 15/369 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L++    V+    +I  P+RELAAQ+   A     + +   + VA  +GG     Q  
Sbjct: 61  QMLDEEAESVQ---AVITAPSRELAAQIYQAARQLASFSEK-EIRVANYVGGTDKARQIG 116

Query: 118 KLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           KLE     ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P 
Sbjct: 117 KLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPK 176

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TIE+  ++T  +  K   + Q
Sbjct: 177 DLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGR-DKNAQIYQ 235

Query: 237 --QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             QLLQ    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K  
Sbjct: 236 ISQLLQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D 
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDD 351

Query: 355 KHIDAIEKL 363
             I  +EK+
Sbjct: 352 SDIRELEKM 360


>gi|21283239|ref|NP_646327.1| hypothetical protein MW1510 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486394|ref|YP_043615.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|148268042|ref|YP_001246985.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394110|ref|YP_001316785.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus JH1]
 gi|253314929|ref|ZP_04838142.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
 gi|253733192|ref|ZP_04867357.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257793634|ref|ZP_05642613.1| DEAD/DEAH helicase [Staphylococcus aureus A9781]
 gi|258411066|ref|ZP_05681346.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A9763]
 gi|258420130|ref|ZP_05683085.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A9719]
 gi|258437390|ref|ZP_05689374.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A9299]
 gi|258443596|ref|ZP_05691935.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A8115]
 gi|258446803|ref|ZP_05694957.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A6300]
 gi|258453534|ref|ZP_05701512.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A5937]
 gi|269203186|ref|YP_003282455.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282893059|ref|ZP_06301293.1| helicase [Staphylococcus aureus A8117]
 gi|282928191|ref|ZP_06335796.1| helicase [Staphylococcus aureus A10102]
 gi|295406681|ref|ZP_06816486.1| helicase [Staphylococcus aureus A8819]
 gi|296275820|ref|ZP_06858327.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207723|ref|ZP_06924158.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297245737|ref|ZP_06929602.1| helicase [Staphylococcus aureus A8796]
 gi|300911804|ref|ZP_07129247.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|21204679|dbj|BAB95375.1| MW1510 [Staphylococcus aureus subsp. aureus MW2]
 gi|49244837|emb|CAG43297.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|147741111|gb|ABQ49409.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946562|gb|ABR52498.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|253728732|gb|EES97461.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257787606|gb|EEV25946.1| DEAD/DEAH helicase [Staphylococcus aureus A9781]
 gi|257840216|gb|EEV64680.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A9763]
 gi|257843841|gb|EEV68235.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A9719]
 gi|257848595|gb|EEV72583.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A9299]
 gi|257851002|gb|EEV74945.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A8115]
 gi|257854378|gb|EEV77327.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A6300]
 gi|257864265|gb|EEV87015.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A5937]
 gi|262075476|gb|ACY11449.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282589998|gb|EFB95080.1| helicase [Staphylococcus aureus A10102]
 gi|282764377|gb|EFC04503.1| helicase [Staphylococcus aureus A8117]
 gi|285817240|gb|ADC37727.1| ATP-dependent RNA helicase YqfR [Staphylococcus aureus 04-02981]
 gi|294968428|gb|EFG44452.1| helicase [Staphylococcus aureus A8819]
 gi|296887740|gb|EFH26638.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297177388|gb|EFH36640.1| helicase [Staphylococcus aureus A8796]
 gi|298694840|gb|ADI98062.1| probable ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300886050|gb|EFK81252.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|302333234|gb|ADL23427.1| ATP-dependent RNA helicase DEAD/DEAH box family protein
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|312829946|emb|CBX34788.1| DEAD/DEAH box helicase family protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129836|gb|EFT85826.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|323443230|gb|EGB00848.1| ATP-dependent RNA helicase [Staphylococcus aureus O46]
 gi|329727198|gb|EGG63654.1| DEAD-box ATP-dependent RNA helicase CshB [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 448

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/381 (33%), Positives = 204/381 (53%), Gaps = 13/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ + IP +L+R ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++   + ++ P+ +++ PTRELA Q+ D      +    ++V + IGG   E   ++   
Sbjct: 66  ID---SEIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRCNA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L ++    LVIDEAD M+D+G I  +  I + +       
Sbjct: 123 QPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNANIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +LQ     +L +P+ + V++     + IE   + T     K  A +++ L  
Sbjct: 183 VFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPT-----KGAAKVEKTLNL 237

Query: 242 QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            D +     IIFCN + N  +L  SL + G  V  IHG +  R R + +   +    Q +
Sbjct: 238 IDILNPYLCIIFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYV 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +ASDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  
Sbjct: 298 IASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISL 357

Query: 360 IEK--LIEKKVDWLNGDLSSL 378
           IE    +   VD  +G+L  +
Sbjct: 358 IEDRGFVFNTVDIKDGELKEV 378


>gi|225429488|ref|XP_002278119.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296081635|emb|CBI20640.3| unnamed protein product [Vitis vinifera]
          Length = 413

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 199/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G    +    L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 102 LDYGLVECQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V K+D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     V+ L  +++ L
Sbjct: 394 IQRFYNVVVEELPSNVADL 412


>gi|253741975|gb|EES98832.1| Translation initiation factor eIF-4A, putative [Giardia
           intestinalis ATCC 50581]
          Length = 391

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 121/376 (32%), Positives = 202/376 (53%), Gaps = 7/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L P ++  +   GY  P+ IQ + I  ++   D    AQ+GTGKTA+F + ML  
Sbjct: 22  FDDMDLHPDLLFGIFSYGYKTPSAIQSQAIVPIISGKDTIAQAQSGTGKTAAFTIGML-- 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            ++    ++ P+ +IL PTRELA Q     E  G    + VA  IGG   +  +    + 
Sbjct: 80  -QRIDIAMKSPQAIILSPTRELALQTLKVVEGIGSRLQVEVAQCIGGTQVD-DDITAAQS 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+L    +  +  +N++++++DEAD ML  GF   I +I   +    Q +L
Sbjct: 138 CHLIVATPGRLLSLLQKKYVTTSNVKMVILDEADEMLSRGFTEQIVSIMKFMNADIQIVL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  E+ +++  F+++P  I V     T + I    V    Q + K  +++ + +  
Sbjct: 198 VSATLPPEILELTRQFMRDPVSILVKEAELTLDGIRQYVVEL--QDAWKTEVVEDIYKVL 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            +++ G+IFCN    V  L   L+  G ++  IH  +DQ  R KI+  F+ G  ++++A+
Sbjct: 256 -SVQQGVIFCNSIARVKELAEKLKSAGHTISCIHSELDQAERNKIMGEFRSGQTRILIAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           ++ ARG+D+ +V  V N+D+P  AE Y+HRIGR+GR GR G A   V  +D + + +I  
Sbjct: 315 NIIARGIDVQNVSLVINYDIPREAETYLHRIGRSGRFGRKGVAINFVTDKDKQSMQSITD 374

Query: 363 LIEKKVDWLNGDLSSL 378
                 + L  DLSSL
Sbjct: 375 KFNVTTENLPEDLSSL 390


>gi|147779855|emb|CAN61608.1| hypothetical protein VITISV_040122 [Vitis vinifera]
          Length = 413

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 199/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G    +    L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 102 LDYGLVECQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V K+D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     V+ L  +++ L
Sbjct: 394 IQRFYNVVVEELPSNVADL 412


>gi|302524816|ref|ZP_07277158.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces sp.
           AA4]
 gi|302433711|gb|EFL05527.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces sp.
           AA4]
          Length = 511

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 125/362 (34%), Positives = 188/362 (51%), Gaps = 7/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL   +V A+   G  +P PIQ  T+P  L   DV G  +TG+GKT  FVLP+L  
Sbjct: 4   FTELGLPKPLVDALAAQGVTEPFPIQAATLPHTLAGRDVLGRGRTGSGKTYGFVLPVLAR 63

Query: 63  LEKGRARVRMPR--TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L  G  R R  R   LIL PTRELA Q+        +   L    + GG+    Q  +L 
Sbjct: 64  LAAGPTRRRPGRPRALILAPTRELATQIEAAIVPLARPLGLKATTIFGGVSANPQITRLR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+++  PGR+ DH   G+  ++ IEI V+DEAD M D+GF+P ++ I +  P   Q 
Sbjct: 124 DGVDIVVACPGRLADHMRTGEAKLDKIEITVLDEADHMADLGFLPEVRRIMAATPERGQR 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+   +  +++ F+ +P    V++  S   T+ H  +  + + + +  +L  L  
Sbjct: 184 LLFSATLDGGIDVLAKRFMNDPMLHSVDSAQSPVSTMTHHVL--HLEETHRLPVLVDLTA 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       ++F   K     L   L   G     +HGN+ Q +R + L  F  GT + +V
Sbjct: 242 APGRT---LVFTRTKHRAKALTRKLVASGVPAVELHGNLGQNARTRNLEAFSSGTAKTLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   TL+  E +  + A+
Sbjct: 299 ATDIAARGIHVDDVTLVIHADPPVEHKAYLHRSGRTARAGASGTVVTLMTDEQVADVRAL 358

Query: 361 EK 362
            +
Sbjct: 359 TR 360


>gi|307104599|gb|EFN52852.1| hypothetical protein CHLNCDRAFT_26393 [Chlorella variabilis]
          Length = 313

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 117/315 (37%), Positives = 188/315 (59%), Gaps = 3/315 (0%)

Query: 36  LQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKY 95
           +Q  DV G+A+TG+GKTA+FV+P++  L++  AR    R +IL PTRELA Q     ++ 
Sbjct: 1   MQGLDVVGMARTGSGKTAAFVIPLVERLKEHSARAG-ARAVILSPTRELALQTHKVVKEL 59

Query: 96  GKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDE 154
           G++ NL  A+L+GG   EAQ  +L    D+L+ TPGR++ H    + + + + E LV DE
Sbjct: 60  GRHSNLRTAVLVGGDSMEAQFAELAAFPDILVATPGRLMHHLQEVEGMSLRSCEYLVFDE 119

Query: 155 ADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA 214
           ADR+ +MGF   ++ I + V  +RQTLLFSATM   L + +   L+ P+ + ++  +  +
Sbjct: 120 ADRLFEMGFAEQLRQILASVGPSRQTLLFSATMPKALAEFARAGLKEPELVRLDADTKIS 179

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
             +   F  T     K  ALL  L +     +  IIF + + +V  L   L + G     
Sbjct: 180 PDLALAFF-TVRWEDKPAALLYLLREVVAADQPTIIFASTRHHVEFLAGLLAQDGLEAAY 238

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HGN+DQ +R   ++ F+ G ++L+V +D+AARGLDIP + +V ++D P + + ++HR G
Sbjct: 239 VHGNMDQAARKIHIAKFRAGRVRLLVVTDVAARGLDIPLLDNVVHYDFPPKPKLFVHRSG 298

Query: 335 RTGRAGRHGKAFTLV 349
           R  RAGR G +++L+
Sbjct: 299 RAARAGRSGTSYSLL 313


>gi|50545487|ref|XP_500281.1| YALI0A20328p [Yarrowia lipolytica]
 gi|74660175|sp|Q6CGD1|DBP4_YARLI RecName: Full=ATP-dependent RNA helicase DBP4
 gi|49646146|emb|CAG84219.1| YALI0A20328p [Yarrowia lipolytica]
          Length = 740

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 126/353 (35%), Positives = 197/353 (55%), Gaps = 10/353 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS   +  + ++ YV  T +Q + IP  LQ HD+ G A+TG+GKT +F++P+L  
Sbjct: 41  FEELPLSEATIEGLKNSHYVTCTDVQKRAIPPALQGHDLLGAARTGSGKTLAFLVPVLEC 100

Query: 63  LEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + + + V     L++ PTRELA Q+     K G+ ++ +  L+IGG     +  +L +
Sbjct: 101 LFRNKWSDVDGLGALVISPTRELAVQIFQVLRKIGRCHSFSAGLVIGGKDVAMEADRLAK 160

Query: 122 GADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++LICTPGR+L H ++     ++N+++LV+DEADR+LDMGF   +  I   +P  RQT
Sbjct: 161 -LNILICTPGRLLQHMDQTSGFDLSNVKMLVLDEADRILDMGFKKTMDAILENLPVDRQT 219

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVN--TPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT T  +  ++   L +PK I  N  T SST + +E  +V    Q   K   L   
Sbjct: 220 LLFSATQTKSVSDLARLSLADPKYISANPDTTSSTPKNLEQNYVCVELQ--DKLDTLWGF 277

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L++    K  I+F +  K V  +  +    + G  +  +HG   Q +RM ++S F + + 
Sbjct: 278 LRTHTKFKI-IVFFSSSKQVRYVYETFRTLQPGIPLLHLHGKQKQGARMDVVSKFSKASS 336

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
             + A+D+ ARG+D P V  V   D P  A  YIHR+GR+ R G+ GKA   +
Sbjct: 337 SCLFATDIVARGIDFPAVHWVVQVDCPEDAATYIHRVGRSARFGKSGKALLFL 389


>gi|239926683|ref|ZP_04683636.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 471

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 122/353 (34%), Positives = 191/353 (54%), Gaps = 13/353 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA L L  +V+  +   G  +P PIQ  T+P  L+  D+ G  +TG+GKT +F LP+L
Sbjct: 28  VSFAGLELPVEVLRTLSGLGVREPFPIQAATLPDALEGRDILGRGRTGSGKTLAFGLPLL 87

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T     RA  + P  LIL PTRELA QVA     Y +   L +A ++GG+    Q  +L 
Sbjct: 88  TRTAGRRAEPKQPLALILVPTRELAQQVAQALAPYAEALRLRMATVVGGMSIGRQVAELR 147

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA+V++ TPGR+ D   R    +  + I V+DEAD+M D+GF+P + ++   V    Q 
Sbjct: 148 QGAEVVVATPGRLHDLIERNACRLGRVRITVLDEADQMCDLGFLPQVVDVLDQVHPDGQR 207

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQQL 238
           +LFSAT+  ++ ++    L +P    V+  + T  T+EH  +  +   +Y+         
Sbjct: 208 MLFSATLDRDVDQLVRRCLHDPVVHSVDPSAGTVTTMEHHVLVVHGPDRYA--------- 258

Query: 239 LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + ++   ++G  ++F + K  V  L   L   G    A+H    Q  R + L+ FK G +
Sbjct: 259 VTTEIAARDGRVLLFLDTKHAVDQLTRHLRASGVHAGALHSGKSQPQRTRTLAQFKNGQL 318

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            ++VA+++AARGL + D+  V N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 319 TVLVATNVAARGLHVDDLDLVVNVDPPTDPKDYVHRAGRTARAGESGSVVTLV 371


>gi|224286258|gb|ACN40838.1| unknown [Picea sitchensis]
          Length = 411

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 201/379 (53%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    Q  DV   AQ+GTGKTA+F      I
Sbjct: 40  FDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCQGLDVIQQAQSGTGKTATFCSG---I 96

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++    V   + L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 97  LQQLNYNVPECQALVLAPTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLRILQAG 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 157 VHVVVGTPGRVYDMLRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPTNLQVGV 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+ NP RI V     T E I+  +V    +  K    C L + L 
Sbjct: 217 FSATMPPEALEITRKFMTNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLA 276

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 277 ITQ-----SVIFINTRRKVDWLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 331

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V K+D + +  
Sbjct: 332 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLQD 391

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     ++ L  +++ L
Sbjct: 392 IQRFYNVVIEELPNNVADL 410


>gi|170763913|ref|ZP_02635037.2| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens B str. ATCC 3626]
 gi|170712566|gb|EDT24748.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens B str. ATCC 3626]
          Length = 407

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 122/371 (32%), Positives = 209/371 (56%), Gaps = 8/371 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           MD F  LGLS +V+ +++  G  +PT IQ K IP +L+  +V G A+TGTGKT +++LP+
Sbjct: 3   MDKFLKLGLSEEVLKSLVGLGIEEPTDIQEKAIPEILKGKNVIGKAETGTGKTLAYLLPI 62

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVAD--NFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +  ++  +  ++    +IL PT EL  Q+ +  N  K G    +T   L+G    + Q +
Sbjct: 63  IEKIDDSKNEMQ---AIILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQME 119

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+    +L+ T GRIL+  N+ K+  N I+ +VIDE D++LD   I  ++++    P  
Sbjct: 120 KLKNKPHILVGTTGRILELINKKKITTNTIKTIVIDEGDKLLDFINIKDVKSVVKSCPRD 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSATM ++  + ++  +   + I+    +   E IEH +     +   K   L++
Sbjct: 180 TQKLIFSATMNEKALETADELIGTSELIQAKAANKVNENIEHGYFQ--VELRDKIDFLRK 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ +    K  I+F N   NV N+   L+       ++HG+ ++  R K L +F+ G  +
Sbjct: 238 LIHAIGDEKKIIVFINNSYNVHNVIQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAK 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ SD++ARGLDI    H+ N D+P  ++NY+HR+GR GRAG  G A++L   ++ K I
Sbjct: 298 VLITSDVSARGLDIKGATHIVNLDIPMNSQNYLHRVGRVGRAGEKGFAYSLADYKEEKII 357

Query: 358 DAIEKLIEKKV 368
              E+ ++ K+
Sbjct: 358 VKCERQLKIKI 368


>gi|224128550|ref|XP_002329031.1| predicted protein [Populus trichocarpa]
 gi|118482674|gb|ABK93256.1| unknown [Populus trichocarpa]
 gi|222839702|gb|EEE78025.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 199/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G  + +    L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 102 LDYGLVQCQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVFDMLRRQSLRQDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V  +D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTSDDDRMLFD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     V+ L  +++ L
Sbjct: 394 IQKFYNVVVEELPSNVADL 412


>gi|152013506|sp|Q6BJX6|DHH1_DEBHA RecName: Full=ATP-dependent RNA helicase DHH1
          Length = 516

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/360 (35%), Positives = 190/360 (52%), Gaps = 7/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++  + +AG+ KP+P+Q ++IP+ L   D+   A+ GTGKTASFV+P    
Sbjct: 32  FEDFPLKRELLMGIFEAGFEKPSPVQEESIPMALAGRDILARAKNGTGKTASFVIP---C 88

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++ R +V   + LIL PTRELA Q +      GK+  L   +  GG        +L   
Sbjct: 89  LQQARPKVNKIQALILVPTRELALQTSQVVRTLGKHLGLQCMVTTGGTSLRDDILRLNDP 148

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             VL+ TPGR+LD  +R    ++   + V+DEAD+ML   F   I+ I +  P TRQ+LL
Sbjct: 149 VHVLVGTPGRVLDLASRKVADLSECPLFVMDEADKMLSREFKGIIEQILAFFPTTRQSLL 208

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    ++   +  L  P  I +     T   I   +   + +  +K   L  L  S+
Sbjct: 209 FSATFPLAVKSFMDQHLTKPYEINL-MDELTLRGISQFYA--FVEEKQKLHCLNTLF-SK 264

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   IIFCN    V  L   + + G+S    H  + Q +R K+   F++G ++++V S
Sbjct: 265 LQINQAIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQHARNKVFHEFRQGKVRVLVCS 324

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L++  D  ++  IE+
Sbjct: 325 DLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYNLYKIEQ 384


>gi|145332383|ref|NP_001078148.1| EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1);
           ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|332641919|gb|AEE75440.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 402

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 200/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 31  FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    + +    L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 91  LDFSLIQCQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAG 147

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 148 VHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 207

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 208 FSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLA 267

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 268 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 322

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V ++D + +  
Sbjct: 323 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFD 382

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     V+ L  +++ L
Sbjct: 383 IQKFYNVVVEELPSNVADL 401


>gi|55821673|ref|YP_140115.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55823593|ref|YP_142034.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
 gi|55737658|gb|AAV61300.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55739578|gb|AAV63219.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 447

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 201/366 (54%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ +  + +PTP+Q K IP+V    D+ G ++TG+GKT +F+LP  
Sbjct: 1   MSFKDFNFKDYIQEALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
            I EK     R  + +I  P+RELA Q+  + ++  K+ +  + ++  +GG   + Q +K
Sbjct: 59  -IFEKLNPESRDVQVVITAPSRELATQIYQSTKQIAKHSDTEIRVVNYVGGTDKQRQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+     ++I TPGRI D F  G L ++     V+DEAD  +DMGF+  +  I + +P  
Sbjct: 118 LKVAQPHIVIGTPGRIYDLFKSGDLAIHKAHTFVVDEADMTMDMGFLATVDKIAASLPKE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  V+T  + +K   +L+ 
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEQIKTSTVIADTIDNWLVSTKGR-NKNGQILEM 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   Q  +   +IF N K+   +L   L   G  V  IHG I  R R +I++  K+   +
Sbjct: 237 LKGMQPYL--AMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLEFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 RELEKM 360


>gi|71649079|ref|XP_813297.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70878168|gb|EAN91446.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 903

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 128/374 (34%), Positives = 199/374 (53%), Gaps = 13/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL   V+  VL  GY  PTPIQ K IP + Q  DV  +A+TG+GKTA+F++PML +
Sbjct: 109 FQSFGLDKPVLDGVLRLGYNVPTPIQRKAIPPMTQGSDVVAMARTGSGKTAAFLIPMLNL 168

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  ++    R L+L PTREL+ Q+     +  K  +L  A L+GG   E Q + L   
Sbjct: 169 L-KSHSKTVGIRGLVLAPTRELSLQILRFGIQLNKFLDLRFAALVGGNSLEQQFELLGSN 227

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+L       L ++ ++ LV+DEADR+ ++G  P I  +   VP   Q  L
Sbjct: 228 PDIVVATPGRLLHIMEEASLKLSMVKCLVLDEADRLFELGLQPQIVAVMQKVPDACQRAL 287

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ-- 240
           FSATM   L + +   L NP  I ++     ++ ++    A + +  +K A L  LL+  
Sbjct: 288 FSATMPSVLAEFTSAGLHNPVVIRLDAEMKLSDKLKQS--AFFVRNDEKVAALIVLLKKV 345

Query: 241 --------SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                   +  T +  +IF   K +V  L   +E    S  A+HG +DQ +R   +  F 
Sbjct: 346 IGVAAGDTNDGTAQQALIFVESKFHVDYLQMIMEAYLISCSAVHGQMDQEARRNAVQAFS 405

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                +M+ +D+AARGLD+P + +V NF  P+  + ++HR+GR  RAGR G A++ +  E
Sbjct: 406 RRETHVMIVTDVAARGLDLPLLDNVVNFSFPSTPKLFVHRVGRVARAGRSGAAYSFLTFE 465

Query: 353 DIKHIDAIEKLIEK 366
           D  +   +   I++
Sbjct: 466 DFPYYVDLMAFIDR 479


>gi|328699290|ref|XP_001948649.2| PREDICTED: ATP-dependent RNA helicase vasa, isoform A-like
           [Acyrthosiphon pisum]
          Length = 678

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 205/362 (56%), Gaps = 14/362 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL   ++  + +  +  PTP+Q   IP++++  D+   AQTG+GKTA++VLP+L  
Sbjct: 255 FQSSGLRTILLDNLSNCNFSTPTPVQNYAIPIIIEGRDLMASAQTGSGKTAAYVLPILHN 314

Query: 63  LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQ 115
           L K   ++        P  +I+ PTREL +Q+++   K+ K  ++   LL GG   +  +
Sbjct: 315 LLKQPTQLIYDEHHCEPHVVIIAPTRELVSQISECVWKFSKGTDIRNGLLYGGTSVYHQK 374

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI--TSL 173
           +K L+RG  +L  TPGR++D   +G +  ++++  V+DEADRMLDMGF P I+ +   S 
Sbjct: 375 SKILQRGVHILTATPGRLIDFVEKGIVTFSSVKFFVLDEADRMLDMGFKPDIEQVLTNST 434

Query: 174 VPF--TRQTLLFSATMTDELQKVSENFLQNPK-RIEVNTPSSTAETIEHCFVATYAQYSK 230
           +P   +RQT++FSAT    +Q ++ ++L++    + V       + +    +    ++ K
Sbjct: 435 MPSIESRQTIMFSATFASPIQHMATSYLKSDYIFVAVGEIGGACKDVVQTVIEV-TKFKK 493

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K ALL  +++  +  +  I+F  +KK        L +  F   +IHG  +Q  R + L +
Sbjct: 494 KNALLD-IIKEMENCQGTIVFVERKKVADYTAAYLSEVDFPTTSIHGAREQPEREQALRD 552

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK   ++++VA+ +AARGLDI  V +V NFD+P   + Y+HRIGRTGR G  GKA +   
Sbjct: 553 FKTNRMKILVATAVAARGLDIKGVNYVVNFDLPKTIDEYVHRIGRTGRLGNAGKAISFFD 612

Query: 351 KE 352
            E
Sbjct: 613 PE 614


>gi|170045492|ref|XP_001850341.1| ATP-dependent RNA helicase DDX54 [Culex quinquefasciatus]
 gi|167868515|gb|EDS31898.1| ATP-dependent RNA helicase DDX54 [Culex quinquefasciatus]
          Length = 793

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 126/381 (33%), Positives = 206/381 (54%), Gaps = 6/381 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  V+  +L  GY  PTPIQ KTIPL+L+  DV  +A+TG+GKT  F++P+   
Sbjct: 40  FQAMGLAMPVLKGILKMGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTGCFLIPLFEK 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K R   +  R LIL PTRELA Q     ++ GK  +L   L++GG   + Q   +   
Sbjct: 100 L-KQREIKKGARALILSPTRELAIQTFKFIKQLGKFMDLKTILVLGGDSMDTQFAAIHTL 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR L       L ++ I+  V DEADR+ +MGF   +    + +P +RQ +L
Sbjct: 159 PDIIVATPGRFLHLCVEMDLKLSAIKYCVFDEADRLFEMGFGEQLTETLARLPSSRQMVL 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + + ++  L NP  I ++  S   ET++  F+  Y +  ++ A L  L++ +
Sbjct: 219 FSATLPKVMVEFAKAGLSNPTLIRLDVESKIPETLDLRFI--YCRPDERYATLLVLIR-E 275

Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              KN   ++F   + +V  +   L K G     ++  +D  +R    + F    + ++V
Sbjct: 276 VIPKNAQIVVFAGTQHHVELISLLLTKSGIPCTHVYSGLDASARKINTAKFTMKKVNVLV 335

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARGLDIP + +V N   P + + +IHR+GR  RAGR G A+ + + +DI H+  +
Sbjct: 336 VTDIAARGLDIPTLDYVVNVHFPGKPKLFIHRVGRCARAGRSGTAYNIFSNDDIAHMIDL 395

Query: 361 EKLIEKKVDWLNGDLSSLNPP 381
              + + +D  +       PP
Sbjct: 396 HMFLTRPLDVTDSRNMGRAPP 416


>gi|13161879|emb|CAC33024.1| hypothetical protein [Takifugu rubripes]
          Length = 476

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 149/422 (35%), Positives = 223/422 (52%), Gaps = 28/422 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGLS  ++      G  K TP+Q   +P +LQ  D  G A+TG+GKTA+FVLP+L 
Sbjct: 3   DFSSLGLSDWLIKQCKQLGIQKATPVQENCVPAILQGSDCMGCAKTGSGKTAAFVLPVLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    +     L+L PTR LA Q+A+ F   GK   L   +++GG+    Q  +L  
Sbjct: 63  KLSEDPYGIF---CLVLTPTRSLAYQIAEQFRVLGKPLGLKDCIIVGGMGMVTQALELSN 119

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFT 177
              V++ TPGR+ DH        +  I+ LV+DEADR+L+ G   F   ++ I + VP  
Sbjct: 120 QPHVVVATPGRLADHIRSSSTFSLAKIQFLVMDEADRLLEQGCTDFTKDLETILTAVPAK 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT+TD LQ++    +  P   E  +   T E ++  ++ T  +   K A L  
Sbjct: 180 RQTLLFSATLTDTLQELKHIAMNKPFFWESKSECRTVEELDQRYILTPEKV--KDAYLVH 237

Query: 238 LLQS---QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L+Q+   Q    + IIF +  K    L   L+K  F   ++H  + Q  R   L+ FK  
Sbjct: 238 LIQTFTDQHDDWSIIIFTSTCKYCQILTMMLQKFHFPTISLHSMMKQVQRFANLAKFKAS 297

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             ++++A+D+AAR LDIP V  V   + P   + YIHR+GRT RAG +G + TLV + DI
Sbjct: 298 VYKILIATDVAARCLDIPTVQVVITNNTPGLPKIYIHRVGRTARAG-NGVSITLVTQYDI 356

Query: 355 KHIDAIEKLI-EKKVDWLNGDLSSLNPPLEKIDI----AQHNHARKNNPIPQKSTGFDRR 409
             + +IE+ I E K+            P+E+ ++     Q N  R+   I + ST FD +
Sbjct: 357 HLVHSIEEQIRETKLKEF---------PVEEKEVLKILTQVNVTRRECEILE-STDFDEK 406

Query: 410 KK 411
           K+
Sbjct: 407 KE 408


>gi|110800080|ref|YP_696204.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens ATCC
           13124]
 gi|110674727|gb|ABG83714.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens ATCC 13124]
          Length = 405

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 122/371 (32%), Positives = 209/371 (56%), Gaps = 8/371 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           MD F  LGLS +V+ +++  G  +PT IQ K IP +L+  +V G A+TGTGKT +++LP+
Sbjct: 1   MDKFLKLGLSEEVLKSLVGLGIEEPTDIQEKAIPEILKGKNVIGKAETGTGKTLAYLLPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVAD--NFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +  ++  +  ++    +IL PT EL  Q+ +  N  K G    +T   L+G    + Q +
Sbjct: 61  IEKIDDSKNEMQ---AIILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQME 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+    +L+ T GRIL+  N+ K+  N I+ +VIDE D++LD   I  ++++    P  
Sbjct: 118 KLKNKPHILVGTTGRILELINKKKITTNTIKTIVIDEGDKLLDFINIKDVKSVVKSCPRD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSATM ++  + ++  +   + I+    +   E IEH +     +   K   L++
Sbjct: 178 TQKLIFSATMNEKALETADELIGTSELIQAKAANKVNENIEHGYFQ--VELRDKIDFLRK 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ +    K  I+F N   NV N+   L+       ++HG+ ++  R K L +F+ G  +
Sbjct: 236 LIHAIGDEKKIIVFINNSYNVHNVIQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAK 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ SD++ARGLDI    H+ N D+P  ++NY+HR+GR GRAG  G A++L   ++ K I
Sbjct: 296 VLITSDVSARGLDIKGATHIVNLDIPMNSQNYLHRVGRVGRAGEKGFAYSLADYKEEKII 355

Query: 358 DAIEKLIEKKV 368
              E+ ++ K+
Sbjct: 356 VKCERQLKIKI 366


>gi|314933730|ref|ZP_07841095.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           caprae C87]
 gi|313653880|gb|EFS17637.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           caprae C87]
          Length = 447

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/383 (35%), Positives = 203/383 (53%), Gaps = 17/383 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ K IP +L+  ++ G +QTGTGKT SF+LP++ +
Sbjct: 6   FEHFNLDESLIKAVQDLNFEKPTEIQNKIIPRILKGTNLIGQSQTGTGKTHSFLLPLIQM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           ++     ++ P+ +++ PTRELA Q+   A +  K+ +  N  V L IGG   E   ++ 
Sbjct: 66  ID---VDLQEPQAIVVAPTRELAQQLFQAASHLCKFKQEVN--VKLFIGGTDIEKDKQRC 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R   ++I TP RI D    G L  +    L++DEAD M+D+G I  +  I + +     
Sbjct: 121 NRQPQLIIGTPTRINDLAQGGHLHAHLASNLIVDEADLMIDLGLIEDVDYIAARLNDEAH 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +FSAT+   LQ     +L  P+ +EV+  S   + IE   + T     K  A + + L
Sbjct: 181 IAVFSATIPKSLQPFLNKYLSQPEFVEVDHKSHNKKNIEFYLIPT-----KGTAKVDKTL 235

Query: 240 QSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              D +     IIFCN ++N   L  SL K+G  V  IHG +  R R + +   +    Q
Sbjct: 236 NLIDILNPYLSIIFCNSRENANELADSLNKEGIKVGMIHGGLTPRERKQQMKRIRNLDFQ 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++ASDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I
Sbjct: 296 YVIASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNI 355

Query: 358 DAIEK--LIEKKVDWLNGDLSSL 378
             IE      + VD  NG+L  +
Sbjct: 356 SLIEDKGYHFENVDIKNGELKPI 378


>gi|258423211|ref|ZP_05686104.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A9635]
 gi|257846661|gb|EEV70682.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A9635]
          Length = 448

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/381 (33%), Positives = 204/381 (53%), Gaps = 13/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ + IP +L+R ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++   + ++ P+ +++ PTRELA Q+ D      +    ++V + IGG   E   ++   
Sbjct: 66  ID---SEIKEPQAIVVAPTRELAQQLYDAANHISQFKAGVSVEVFIGGTDIEKDRQRCNA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L ++    LVIDEAD M+D+G I  +  I + +       
Sbjct: 123 QPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNANIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +LQ     +L +P+ + V++     + IE   + T     K  A +++ L  
Sbjct: 183 VFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPT-----KGAAKVEKTLNL 237

Query: 242 QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            D +     IIFCN + N  +L  SL + G  V  IHG +  R R + +   +    Q +
Sbjct: 238 IDILNPYLCIIFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYV 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +ASDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  
Sbjct: 298 IASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISL 357

Query: 360 IEK--LIEKKVDWLNGDLSSL 378
           IE    +   VD  +G+L  +
Sbjct: 358 IEDRGFVFNTVDIKDGELKEV 378


>gi|156099810|ref|XP_001615701.1| RNA helicase-1 [Plasmodium vivax SaI-1]
 gi|5679692|emb|CAB51741.1| RNA helicase-1 [Plasmodium cynomolgi]
 gi|148804575|gb|EDL45974.1| RNA helicase-1, putative [Plasmodium vivax]
          Length = 398

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 125/352 (35%), Positives = 192/352 (54%), Gaps = 13/352 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL+ K++  +   G+ KP+ IQ + I  +L  +D  G AQ+GTGKTA+FV+  L +
Sbjct: 25  FDALGLNEKLLRGIYSYGFEKPSAIQQRGIKPILNGYDTIGQAQSGTGKTATFVISSLQL 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +       +    LIL PTRELA Q+       G    +     +GG        KL++G
Sbjct: 85  INYDYVACQ---ALILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDIDKLKQG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPFTRQTL 181
             +++ TPGR+ D  ++  L ++ +++ ++DEAD ML  GF   I  +   LVP   Q  
Sbjct: 142 VHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVP-DIQVA 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQL 238
           LFSATM  E+ +++  F+++PK I V     T E I   +VA   +  K    C L + L
Sbjct: 201 LFSATMPQEILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLCDLYETL 260

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                T+   II+CN +K V  L   +  + F+V  +HG++DQ+ R  I+  F+ G+ ++
Sbjct: 261 -----TITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRV 315

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           +V +DL ARG+D+  V  V N+D+P   + YIHRIGR+GR GR G A   V 
Sbjct: 316 LVTTDLLARGIDVQQVSLVINYDLPCSPDTYIHRIGRSGRFGRKGVAINFVT 367


>gi|21910935|ref|NP_665203.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS315]
 gi|28895375|ref|NP_801725.1| ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
 gi|21905142|gb|AAM80006.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28810621|dbj|BAC63558.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
          Length = 447

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 203/367 (55%), Gaps = 11/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      V  A+ + G+V PT +Q + IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDYHFKQYVQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKK 118
             L++ +A V++   +I  P+RELA Q+ D  ++  K+    + +A  +GG     Q +K
Sbjct: 61  EKLDEAKAEVQV---VITAPSRELATQIFDACKQIAKHSQEEIRLANYVGGTDKLRQIEK 117

Query: 119 LERGAD--VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           L +G+   ++I TPGRI D    G L ++     V+DEAD  +DMGF+  +  I +  P 
Sbjct: 118 L-KGSQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASFPK 176

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  V+T  +  K   LL+
Sbjct: 177 SVQILVFSATIPQKLQPFLKKYLTNPVIEQIKTKTVIADTIDNWLVSTKGR-DKNGQLLE 235

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L   Q  M   ++F N K+   +L   L   G  V  IHG I  R R +I++  K+   
Sbjct: 236 ILKTMQPYM--AMLFVNTKERADDLHAFLTANGLKVAKIHGGISPRERKRIMNQVKKLDF 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   
Sbjct: 294 EYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSD 353

Query: 357 IDAIEKL 363
           I  +EK+
Sbjct: 354 IKELEKM 360


>gi|323350323|ref|ZP_08085988.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis VMC66]
 gi|322123508|gb|EFX95179.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis VMC66]
          Length = 447

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 197/369 (53%), Gaps = 15/369 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L++    V+    +I  P+RELAAQ+   A     + +   + VA  IGG     Q  
Sbjct: 61  QMLDEEADTVQ---AVITAPSRELAAQIYQAARQLASFSEK-EIRVANYIGGTDKARQIG 116

Query: 118 KLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           KLE     ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P 
Sbjct: 117 KLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPK 176

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TIE+  ++T  +  K   + Q
Sbjct: 177 DLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGR-DKNAQIYQ 235

Query: 237 --QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             QLLQ    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K  
Sbjct: 236 ISQLLQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D 
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDD 351

Query: 355 KHIDAIEKL 363
             I  +EK+
Sbjct: 352 SDIRELEKM 360


>gi|172040746|ref|YP_001800460.1| putative ATP-dependent RNA helicase [Corynebacterium urealyticum
           DSM 7109]
 gi|171852050|emb|CAQ05026.1| putative ATP-dependent RNA helicase [Corynebacterium urealyticum
           DSM 7109]
          Length = 430

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/396 (33%), Positives = 196/396 (49%), Gaps = 35/396 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LGL   +  ++  AG  +  PIQ   IP  ++  DV   A TG+GKT +F LPML 
Sbjct: 14  EFRSLGLPLALAQSLQRAGLREAFPIQASVIPSAVEGKDVLASAPTGSGKTLAFGLPMLA 73

Query: 62  ILEKG---RA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L  G   RA R   PR ++L PTRELA QV +N + +     L   +L+GG+   A   
Sbjct: 74  RLSSGDLPRATRPGNPRGVVLCPTRELAEQVFENLDPHAAALGLRALVLVGGVKVRANLT 133

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L R  D+++ TPGR+ D   R  + + +  + V+DEAD M D+GF+P +Q I    P  
Sbjct: 134 SLARTVDIVVATPGRLNDLIERRAISLEHCAVTVVDEADHMADLGFLPQVQAILERTPRG 193

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV--------NTPSSTAETIEH---------- 219
            Q LLFSAT+  E+  ++E +  NP RIE         + P  T  ++ H          
Sbjct: 194 SQRLLFSATLDGEVAALAEGWTHNPVRIEAEGTHSGATSAPGPTTASVRHQAEVNARPTG 253

Query: 220 ---CFVATYAQYSKKCALLQQLL---QSQDTMK-------NGIIFCNQKKNVVNLCHSLE 266
                 AT    S    LL ++    Q Q  ++         I F      V      L 
Sbjct: 254 PRPTPRATEDLASPVEFLLSEVADNGQRQAAVRAIARKVPRVIFFVRTTHAVTRWAKYLS 313

Query: 267 KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
             G  V A+HGN   +SR + L++F+EG ++++VA+D+AARG+D+P V  V + D P   
Sbjct: 314 AGGIKVSALHGNRGHQSRQRALADFREGKVRVLVATDIAARGIDVPGVQAVVHIDPPRDP 373

Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           +  +HR GRTGRAG  G    L   + ++ +  + +
Sbjct: 374 KALVHRSGRTGRAGASGTVALLAFPDQVREVSTMMR 409


>gi|162460883|ref|NP_001105372.1| eukaryotic initiation factor 4A [Zea mays]
 gi|2500522|sp|Q41741|IF4A_MAIZE RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A
 gi|603190|gb|AAA82736.1| translation initiation factor eIF-4A [Zea mays]
          Length = 410

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 199/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 39  FDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 98

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G    +    L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 99  LDYGLVECQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASG 155

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 156 VHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGV 215

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 216 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNIDKEDWKLDTLCDLYETLA 275

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 276 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 330

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  
Sbjct: 331 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERIVFD 390

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +++     V+ L  +++ L
Sbjct: 391 VQRFYNVTVEELPANVADL 409


>gi|242023199|ref|XP_002432023.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212517381|gb|EEB19285.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 755

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 125/382 (32%), Positives = 207/382 (54%), Gaps = 25/382 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +      V+  +   G++KPT IQ +  P+ L   D+ GIAQTG+GKT ++ LP    
Sbjct: 145 FEESNFPANVMAVIKKQGFLKPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYALPATVH 204

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +  +K  ++   P  L+L PTRELA Q+    + +G + ++    + GG P  +Q + LE
Sbjct: 205 ITNQKPLSKGDGPIALVLAPTRELAQQIQSVAKDFGASCSIRNTCIFGGAPKGSQARDLE 264

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D  ++G   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 265 RGVEIVIATPGRLIDFLDKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 324

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYSKKCALLQQL 238
           L++SAT   E+Q ++E+FL +  +I + + S  A     +H  V    Q S+K   L  L
Sbjct: 325 LMWSATWPKEVQTLAEDFLHDYIQINIGSLSLAANHNIRQHVEV---MQDSEKEGRLTNL 381

Query: 239 LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+     +N   +IF   KK V ++   ++++GF    +HG+  Q+ R  +L+ F+ G  
Sbjct: 382 LRDIGGDRNNKILIFVETKKKVDDIARLVKQEGFPAICMHGDKSQQERDHVLNEFRSGKC 441

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG                +  +Y+HRIGRTGR+ + G AFT    ++ + 
Sbjct: 442 AVLVATDVAARG----------------KIRHYVHRIGRTGRSSQMGTAFTFFTPQNARQ 485

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
              +  ++E+    +N  ++ L
Sbjct: 486 AKGLVAVLEEASQPINPKVTEL 507


>gi|167392680|ref|XP_001740252.1| DEAD box ATP-dependent RNA helicase [Entamoeba dispar SAW760]
 gi|165895712|gb|EDR23341.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba dispar
           SAW760]
          Length = 585

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 122/364 (33%), Positives = 196/364 (53%), Gaps = 31/364 (8%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK-----GRARVRMPRT 75
           Y  PTPIQ  +IP+ L+  D+  +A+TGTGKT ++++P++  + K            P  
Sbjct: 196 YETPTPIQCASIPIALKMRDLIALAETGTGKTFAYLIPLIQFVLKLPKLTEETSASGPYA 255

Query: 76  LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           LIL PTRELA Q+     K    + L V   IGG   + Q ++L  GA++++  PGR+ D
Sbjct: 256 LILAPTRELALQIQQETLKLATPFGLRVCCCIGGESIQPQIEELSNGAEIVVAAPGRLKD 315

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGF---IPYI------------QNITSLV------ 174
             ++  L++     +V+DEAD+M+D+G    + YI            + I S+       
Sbjct: 316 LLSQSYLVLGQCYFVVLDEADKMIDLGLDVQVRYIFSELPSVKDGSTEEIISMEKENASG 375

Query: 175 -PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
            P TR T ++SATM   L+K++  +L+ P  I +    + AE ++   V  + + + K  
Sbjct: 376 NPSTRTTFMYSATMPSTLEKITTEYLRRPITISIGKTGNVAENVKQNVV--WVEDNMKKR 433

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L Q+++S  +    I+F NQ+K V  +C  LEK+  +   IHG   Q  R   L  FK 
Sbjct: 434 KLVQVIKS--SSPPTIVFVNQQKTVEEICLLLEKEKINCVGIHGGKRQIERTDALEGFKR 491

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
               +MVA+++ +RG+DI  V +V N+++P + E Y HR+GRTGRAG+ G A T + + D
Sbjct: 492 KKYPVMVATNVLSRGIDIESVANVINYEMPQKIEEYTHRVGRTGRAGKGGNAITFINEND 551

Query: 354 IKHI 357
            K +
Sbjct: 552 GKEV 555


>gi|38564733|gb|AAR23806.1| initiation factor eIF4A-15 [Helianthus annuus]
          Length = 413

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 198/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCSGILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     V   + L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 102 LDYN---VVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSAG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVFDMLRRQSLRSDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V  +D K +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDEKMLGD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     V+ L  +++ L
Sbjct: 394 IQKFYNVVVEELPSNVADL 412


>gi|332366381|gb|EGJ44132.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK355]
          Length = 447

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 198/369 (53%), Gaps = 15/369 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  +   +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKIKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L++    V+    +I  P+RELAAQ+   A     + +   + VA  +GG     Q  
Sbjct: 61  QMLDEEADSVQ---AVITAPSRELAAQIYQAARQLASFSER-EIRVANYVGGTDKARQIG 116

Query: 118 KLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           KLE     ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P 
Sbjct: 117 KLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPK 176

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TIE+  ++T  +  K   + Q
Sbjct: 177 DLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGR-DKNAQIYQ 235

Query: 237 --QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             QLLQ    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K  
Sbjct: 236 ISQLLQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D 
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDD 351

Query: 355 KHIDAIEKL 363
             I  +EK+
Sbjct: 352 SDIRELEKM 360


>gi|297834230|ref|XP_002884997.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330837|gb|EFH61256.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 412

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 199/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 41  FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    + +    L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 101 LDFSLVQCQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAG 157

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 158 VHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 217

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 218 FSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLA 277

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 278 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 332

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V  +D + +  
Sbjct: 333 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTHDDERMLFD 392

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     V+ L  +++ L
Sbjct: 393 IQKFYNVVVEELPSNVADL 411


>gi|145596711|ref|YP_001161008.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           tropica CNB-440]
 gi|145306048|gb|ABP56630.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440]
          Length = 467

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 125/364 (34%), Positives = 185/364 (50%), Gaps = 7/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LG+   +   +  AG  +P PIQ  T+P  L   DV G  +TG+GKT +FVL +L
Sbjct: 15  LTFTELGVPDLLNRQLAAAGVERPFPIQAATLPDALAGRDVLGRGRTGSGKTYAFVLAVL 74

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           T L       R + PR LIL PTRELA Q+        +  +L    + GG+    Q   
Sbjct: 75  TRLTATATSRRPKRPRALILAPTRELATQIDSVMAPLAQALSLRTMAIFGGVAARPQIAG 134

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G DVL+  PGR+ DH   G   ++ +EI V+DEAD M D+GF+P ++ +    P   
Sbjct: 135 LQAGVDVLVACPGRLTDHVEAGHAHLDAVEITVLDEADHMADLGFLPSVRRLLERTPRGG 194

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT+   +  +   FL  P    V++  S    + H  +  +A+   + A+L +L
Sbjct: 195 QRLLFSATLDSGVDVLVRRFLTKPVVHSVDSTLSPVTAMTHHVLHVHAE--DRFAVLVEL 252

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                T    ++F   K+    L   L   G S   +HGN+ Q +R + L  F  G    
Sbjct: 253 TA---TPSRTVVFTRTKRGAKTLTRRLAAAGVSAVELHGNLAQGARTRNLRAFAAGEAHT 309

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+ I DV  V + D P   + Y+HR GRT RAG  G   TL+    +  + 
Sbjct: 310 LVATDIAARGIHIDDVALVVHADPPVEHKAYLHRSGRTARAGADGTVVTLMTDAQVAEVR 369

Query: 359 AIEK 362
           A+ +
Sbjct: 370 ALTR 373


>gi|256391892|ref|YP_003113456.1| DEAD/DEAH box helicase [Catenulispora acidiphila DSM 44928]
 gi|256358118|gb|ACU71615.1| DEAD/DEAH box helicase domain protein [Catenulispora acidiphila DSM
           44928]
          Length = 502

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 183/347 (52%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L   ++  +   G  +P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 66  FSELDLPGALLQTLAREGLTEPFPIQASTLPNSLAGRDVLGRGRTGSGKTIAFGLALLAR 125

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y     L +A ++GGI    Q   L  G
Sbjct: 126 TAGRRAEPREPLALVLVPTRELAQQVTDALTPYAHAVRLRLATVVGGISIGRQAHALRSG 185

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A++++ TPGR+ D   RG   ++ + I V+DEAD+M DMGF+P +  +   V    QT+L
Sbjct: 186 AEIVVATPGRLKDLIERGDCRLDQVAITVLDEADQMADMGFLPQVTELLDQVAPGGQTML 245

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++   FL +P    V+  +++  T+EH  +  + + S K A +  +   +
Sbjct: 246 FSATLDRNVDRLVRRFLTDPVTHSVDPSAASVTTMEHHLL--HIEGSDKNAAVAHIASRE 303

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F + +     L   L   G    A+HG   Q  R + L  F+ G +  ++A+
Sbjct: 304 GGV---IMFTDTRHGADRLVRDLLANGVRAAALHGGKSQPQRTRTLEQFRGGQVTALIAT 360

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARG+ I  +  V N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 361 NVAARGIHIEGLDLVVNVDPPADHKDYLHRGGRTARAGESGTVVTLV 407


>gi|67968237|dbj|BAE00180.1| VASA RNA helicase [Daphnia magna]
          Length = 779

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 139/420 (33%), Positives = 221/420 (52%), Gaps = 26/420 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + GL P ++  + ++GY+KPTP+Q  +I ++L + D+   A TG+GKTA++++P++ I
Sbjct: 349 FEEAGLRPLLLQNIKNSGYIKPTPVQKASIAVILAKRDLIACAVTGSGKTAAYLVPVMNI 408

Query: 63  L-EKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           L E+G A      ++ P  +I+ PTRELA Q+     K+  N  L   ++ GG     Q 
Sbjct: 409 LLEQGVAGASHGMLQKPEVVIVAPTRELAIQIHREACKFSYNSVLKSVIIYGGTVVNHQR 468

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ---NITSL 173
             L+ G ++L+ T GR+ D  +RG      +  L++DEADRMLDMGF P I+   N  ++
Sbjct: 469 TNLQAGCNILVATAGRLKDFLDRGIFDFTAVRFLILDEADRMLDMGFGPDIEKMVNHPTM 528

Query: 174 VP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-- 230
            P   R+  +FSAT  DE+Q ++  ++++   +       T   +E  F     Q SK  
Sbjct: 529 PPKGIRRVCMFSATFPDEVQALAATYMEDYIFVTTGIVGGTNPDVEQLFF----QCSKRD 584

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K A L ++LQ     K  I+F + KK    +   L        +IHG+  Q  R + L +
Sbjct: 585 KRAKLMEVLQDLGDAKT-IVFVDSKKTADFVAAFLCNNNLQSTSIHGDRLQSQREQALRD 643

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+++AARGLDI  V +V N+D+P   E Y+HR+GRTGR G  GK+ +   
Sbjct: 644 FKNGVRNILVATNVAARGLDIAGVNYVVNYDLPTDIEEYVHRVGRTGRVGNIGKSISFFD 703

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            E D  ++     L+ K     N D+    PP  +  ++  +    +   P    GF  R
Sbjct: 704 DEKDGPNVGKFVSLLTKS----NADV----PPFMQAMVSGVSGMGYDFSAPSSQGGFASR 755


>gi|209879275|ref|XP_002141078.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209556684|gb|EEA06729.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 397

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 121/379 (31%), Positives = 207/379 (54%), Gaps = 10/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L  +++  +   G+  P+ +Q + I  +++  DV   +Q+GTGKT  F +  L +
Sbjct: 25  FESMDLKEELLRGIYSYGFELPSVVQKRAIVPIIKGRDVVVQSQSGTGKTCVFTVGALQL 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               R   R+P+ LIL PTRELA Q        G+  ++ V   +GG       K L+ G
Sbjct: 85  C--NRTTERLPQALILSPTRELAEQSQKVCSALGEYLDINVYCCVGGRKLNDDIKALQSG 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR++    +G L+   I +L++DEAD MLD GF   + +I   +P   Q +L
Sbjct: 143 VTIVSGTPGRVIHMIEQGYLITRRIRLLILDEADEMLDFGFKRQVYDIYKYLPPRIQIIL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+ +E+ +++E  +++P +I V   + T E I   ++    +   +   C L   L 
Sbjct: 203 VSATLPEEIIEITEKIMKDPLKILVKRDNLTLEGIRQFYIYVEQEQWKFDTLCDLYDTL- 261

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN+K  V  L   + +  F+V  +HG++ Q+ R +IL  F++G  +++
Sbjct: 262 ----TITQSVIFCNKKAKVEWLSSKMIENHFTVSFVHGDLSQKDREQILREFRQGKTRVL 317

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+DL  RG+DI  +  V N+D+P   E YIHRIGR+GR GR G A  LV +E++K +  
Sbjct: 318 IATDLWGRGIDIQQINLVINYDIPTNKELYIHRIGRSGRFGRKGVAINLVKEEEVKILKD 377

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     +++ +  +++S+
Sbjct: 378 IEHFFSTRIEEMPANITSI 396


>gi|213406593|ref|XP_002174068.1| ATP-dependent RNA helicase, eIF4A related [Schizosaccharomyces
           japonicus yFS275]
 gi|212002115|gb|EEB07775.1| ATP-dependent RNA helicase, eIF4A related [Schizosaccharomyces
           japonicus yFS275]
          Length = 394

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 202/370 (54%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L   ++  +   GY  P+ IQ + I  + +  DV   AQ+GTGKTA+F + +L  
Sbjct: 23  FEEMKLKEDLLRGIYAYGYETPSAIQSRAITQICKGRDVIAQAQSGTGKTATFSIGILQS 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + LIL PTRELA Q+ +     G + N+     IGG       KKL+ G
Sbjct: 83  ID---LSVRETQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYG 139

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L + N+++LV+DEAD +L+ GF   I +I   +P   Q ++
Sbjct: 140 QHVVSGTPGRVTDMIRRRNLRVRNVKMLVLDEADELLNRGFKDQIYDIYRYLPPGTQVVV 199

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++ +++  F  +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 200 VSATLPQDVLELTNKFTTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTL- 258

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+  F++G  +++
Sbjct: 259 ----TITQAVIFCNSRRKVDWLAEKMREANFTVTSMHGEMPQKERDAIMQEFRQGHSRVL 314

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  +D++ +  
Sbjct: 315 LCTDIWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTNDDVRILRD 374

Query: 360 IEKLIEKKVD 369
           IE+     +D
Sbjct: 375 IEQYYSTVID 384


>gi|167540072|ref|XP_001741531.1| ATP-dependent RNA helicase has1 [Entamoeba dispar SAW760]
 gi|165893947|gb|EDR22062.1| ATP-dependent RNA helicase has1, putative [Entamoeba dispar SAW760]
          Length = 518

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 127/353 (35%), Positives = 206/353 (58%), Gaps = 7/353 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +++  L LS ++  A+ +AGY K T IQ ++IPL+L   D+   A+TG+GKT +F++P++
Sbjct: 57  IEYKSLNLSEEIQKALEEAGYTKMTTIQARSIPLLLMGKDIMAKARTGSGKTLAFLIPIV 116

Query: 61  TILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            IL K   + R     +I+ PTRELA Q  +  EK   +   T  L+IGG   + + + L
Sbjct: 117 EILNKIHFQTRNGTGAIIISPTRELAIQTFEVLEKILAHSERTRTLIIGGSSKKKEEEAL 176

Query: 120 ERGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++GA +++ TPGR+LDH  N    +  N++ LVIDEADR++++GF   ++ I + +P  R
Sbjct: 177 KKGASIVVATPGRLLDHIINTKCFIYRNLKCLVIDEADRIMEVGFEEEMRQILNRLPKNR 236

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQ 236
           QT+LFSAT ++++  ++   L+ P  I V + S  ST+  +E  +V   A+   +  LL 
Sbjct: 237 QTMLFSATQSEKVDDIANISLKQPVVINVESQSTISTSSKLEQGYVLVEAK--DRFRLLY 294

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L+ ++  K  I+F +  K V      L      V A+HG +DQ  R K+   F +   
Sbjct: 295 TFLR-KNKNKKTIVFMSSCKAVKFYSDLLNYIDIPVKALHGQLDQDKRTKVFFEFCKAKE 353

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            +++ +D+AARGLDIP V  +   D+P+  ++YIHR+GRT RA   G+A   V
Sbjct: 354 AILITTDIAARGLDIPAVDWIIQVDLPDSPKDYIHRVGRTARADTKGRALLFV 406


>gi|323440456|gb|EGA98168.1| ATP-dependent RNA helicase [Staphylococcus aureus O11]
          Length = 448

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 127/381 (33%), Positives = 204/381 (53%), Gaps = 13/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ + IP +L+R ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++   + ++ P+ +++ PTRELA Q+ D      +    ++V + IGG   E   ++   
Sbjct: 66  ID---SEIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRCNA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L ++    LVIDEAD M+D+G I  +  I + +       
Sbjct: 123 QPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNANIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +LQ     +L +P+ + V++     + IE   + T     K  A +++ L  
Sbjct: 183 VFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPT-----KGAAKVEKTLNL 237

Query: 242 QDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            D +     IIFCN + N  +L  SL + G  V  IHG +  R R + +   +    Q +
Sbjct: 238 IDILNPYLCIIFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYV 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +ASDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  
Sbjct: 298 IASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISL 357

Query: 360 IEK--LIEKKVDWLNGDLSSL 378
           IE    +   VD  +G+L  +
Sbjct: 358 IEDRGFVFNTVDIKDGELKEV 378


>gi|325688758|gb|EGD30767.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK115]
          Length = 447

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 198/369 (53%), Gaps = 15/369 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L++    V+    +I  P+RELAAQ+   A     + +   + VA  +GG     Q  
Sbjct: 61  QMLDEEADSVQ---AVITAPSRELAAQIYQAARQLASFSEK-EIRVANYVGGTDKARQIG 116

Query: 118 KLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           KLE     ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P 
Sbjct: 117 KLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPK 176

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TIE+  ++T  + +K   + Q
Sbjct: 177 DLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGR-NKNAQIYQ 235

Query: 237 --QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             QLLQ    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K  
Sbjct: 236 ISQLLQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D 
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDD 351

Query: 355 KHIDAIEKL 363
             I  +EK+
Sbjct: 352 SDIRELEKM 360


>gi|281203514|gb|EFA77714.1| DEAD/DEAH box helicase domain-containing protein [Polysphondylium
           pallidum PN500]
          Length = 400

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 122/355 (34%), Positives = 192/355 (54%), Gaps = 6/355 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  V   G+ KP+ IQ + I  + +  D+   AQ+GTGKTA+F + +L+ 
Sbjct: 30  FDAMDLPKDLLRGVYSYGFEKPSAIQQRAIMPLAKGLDIIAQAQSGTGKTATFTIGILSQ 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +     + +    LI+ PTRELA Q+       G+   +     IGG       + L+ G
Sbjct: 90  ININLMKCQ---ALIIAPTRELAQQIQKVVTSLGEYLKIKCYACIGGTRVSDDVQNLQNG 146

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ +  +RG +   +++I V+DEAD ML  GF   I  I  L+P   Q  L
Sbjct: 147 VHIVVGTPGRVYEMLSRGVITRESVKIFVLDEADEMLSRGFKDQIYEIFRLLPLDIQVGL 206

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATMT+E   ++  F++ P +I V     T E I   +V        K  +L  L ++ 
Sbjct: 207 FSATMTEETLSITHKFMKEPVKILVKKDELTLEGIRQFYVNVGPAEQGKFDVLTDLYETL 266

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            ++   +IFCN ++ V  L   + +Q F+V + HG  DQ+ R  IL +F+ GT ++++ +
Sbjct: 267 -SITQSVIFCNTRRKVDWLTTKMTEQQFTVSSTHG--DQKDRDGILQSFRSGTTRVLITT 323

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           DL ARG+D+  V  V NFD+P   ENYIHRIGR+GR GR G A   + + + + I
Sbjct: 324 DLLARGIDVQQVSLVINFDLPLNLENYIHRIGRSGRFGRKGVAINFITQNEQEKI 378


>gi|194205947|ref|XP_001917975.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Equus caballus]
          Length = 785

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 129/354 (36%), Positives = 200/354 (56%), Gaps = 19/354 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ KT   V    D+   A+TGTGKT SF +P++  
Sbjct: 190 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 249

Query: 63  LEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++    R R R P+ L+L PTRELA QV+ +F    K   L VA   GG P+  Q +++
Sbjct: 250 LQRELQDRKRGRAPQVLVLAPTRELANQVSRDFSDITKK--LAVACFYGGTPYGGQIERM 307

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   GKL +  ++ +V+DE D+MLDMGF   ++ I S V + + 
Sbjct: 308 RNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILS-VAYKKD 366

Query: 179 -----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSK 230
                QTLLFSAT    +  V++ ++++  +++++       TA T+EH  +A    +++
Sbjct: 367 SEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAMTVEH--LAIKCHWTQ 424

Query: 231 KCALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A++  +++      +  IIFC  KK    L  S+  +     ++HG+I Q+ R   L 
Sbjct: 425 RAAVIGDVIRVYSGYQRRTIIFCETKKEAQELSQSVSIK-LDAQSLHGDIPQKQREITLK 483

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
            F+ G   ++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 484 GFRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTG 537


>gi|195490088|ref|XP_002092996.1| GE21030 [Drosophila yakuba]
 gi|194179097|gb|EDW92708.1| GE21030 [Drosophila yakuba]
          Length = 827

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 115/357 (32%), Positives = 200/357 (56%), Gaps = 6/357 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   GY  PTPIQ KTIPL+L+  DV  +A+TG+GKTA F++P+   
Sbjct: 41  FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++ R   +  R LIL PTRELA Q     ++ G+   L   L++GG   ++Q   +   
Sbjct: 101 LQR-REPTKGARALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHTC 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR L       L +N+IE +V DEADR+ +MGF   +      +P +RQT++
Sbjct: 160 PDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQTVM 219

Query: 183 FSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           FSAT+   L + +   L +P   R++V +    A  ++  +     +Y+    LL+ ++ 
Sbjct: 220 FSATLPKLLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYVIP 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      ++F   + +V  + + L + G S  +++ ++D  +R    + F    + +++
Sbjct: 280 VES---QTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLI 336

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +D+AARG+DIP +  V N   P + + ++HR+GR  RAGR G A+++V+ +D  H+
Sbjct: 337 VTDVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHL 393


>gi|332358037|gb|EGJ35870.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK1056]
          Length = 447

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 197/369 (53%), Gaps = 15/369 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L++    V+    +I  P+RELAAQ+   A     + +   + VA  +GG     Q  
Sbjct: 61  QMLDEEADSVQ---AVITAPSRELAAQIYQAARQLASFSEK-EIRVANYVGGTDKARQIG 116

Query: 118 KLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           KLE     ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P 
Sbjct: 117 KLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPK 176

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TIE+  ++T  +  K   + Q
Sbjct: 177 DLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGR-DKNAQIYQ 235

Query: 237 --QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             QLLQ    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K  
Sbjct: 236 ISQLLQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D 
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDD 351

Query: 355 KHIDAIEKL 363
             I  +EK+
Sbjct: 352 SDIRELEKM 360


>gi|68475061|ref|XP_718416.1| likely translation initiation factor eIF4A subunit [Candida
           albicans SC5314]
 gi|68475598|ref|XP_718147.1| likely translation initiation factor eIF4A subunit [Candida
           albicans SC5314]
 gi|241948159|ref|XP_002416802.1| ATP-dependent RNA helicase eif4A, putative; eukaryotic initiation
           factor 4A, putative [Candida dubliniensis CD36]
 gi|2500523|sp|P87206|IF4A_CANAL RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|2190248|dbj|BAA20371.1| translation initiation factor [Candida albicans]
 gi|46439903|gb|EAK99215.1| likely translation initiation factor eIF4A subunit [Candida
           albicans SC5314]
 gi|46440181|gb|EAK99490.1| likely translation initiation factor eIF4A subunit [Candida
           albicans SC5314]
 gi|223640140|emb|CAX44387.1| ATP-dependent RNA helicase eif4A, putative [Candida dubliniensis
           CD36]
 gi|238879373|gb|EEQ43011.1| eukaryotic initiation factor 4A [Candida albicans WO-1]
          Length = 397

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 134/377 (35%), Positives = 201/377 (53%), Gaps = 7/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L P +V  +   GY  P+ IQ + I  + +  DV   AQ+GTGKTA+F +  L  
Sbjct: 25  FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQR 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + +     +  + LIL PTRELA Q+ +     G    +TV   IGG       +    G
Sbjct: 85  INENE---KATQALILAPTRELALQIKNVITAIGLYLKVTVHASIGGTSMSDDIEAFRSG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LD   R     + +++ ++DEAD ML  GF   I NI  L+P T Q +L
Sbjct: 142 VQIVVGTPGRVLDMIERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQIVL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQLLQS 241
            SATM  ++ +V+  F+ NP RI V     T E I+  ++      Y   C  L  L  S
Sbjct: 202 LSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVELEDYKFDC--LCDLYDS 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN +  V  L + L +Q F+V AIH ++ Q  R  I+  F+ G+ +++++
Sbjct: 260 I-SVTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILIS 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V   D+  +  IE
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    +++ +  D+ +L
Sbjct: 379 KFYSTQIEEMPADIGAL 395


>gi|168019686|ref|XP_001762375.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686453|gb|EDQ72842.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 689

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 212/367 (57%), Gaps = 14/367 (3%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
           A+LG+   VV A+   G  K  PIQ   +   +Q  D+ G A+TGTGKT +F +P++  +
Sbjct: 50  ANLGIPQAVVDALAKRGIEKLFPIQRAVLDPAMQGRDLIGRAKTGTGKTLAFGIPIIHNI 109

Query: 64  EKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            K        R   R PR L+L PTRELA QV   F +      L+   + GG+    Q 
Sbjct: 110 LKAHEADRTSRRSGRAPRALVLAPTRELAKQVEREFMESAPM--LSTVCVYGGVSITTQQ 167

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++L+RG DV + TPGRI+D   R  L + ++  LV+DEAD+ML +GF   ++ I   +P 
Sbjct: 168 RQLQRGVDVAVGTPGRIIDLIERRSLSLRDVSYLVLDEADQMLAVGFEEDVERILEQMPE 227

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCAL 234
            RQ++LFSATM + ++K+S+ +L++P  I++  ++    AE I+   +A     + K  +
Sbjct: 228 ERQSMLFSATMPNWVKKLSKKYLKSPLTIDLVGDSNEKLAEGIK--MLAVCIPPAAKRTV 285

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L+    ++   I+F   K++  ++   L +      A+HG+I Q  R + L++F+EG
Sbjct: 286 LNDLISVHGSVGKTIVFTQTKRDADDVASVLGRT-LGCEALHGDITQSQRERTLASFREG 344

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARGLDIP+V  V ++++PN  E ++HR GRTGRAG+ G A  + ++   
Sbjct: 345 RFSVLVATDVAARGLDIPNVDLVVHYEIPNDPETFVHRSGRTGRAGKDGTAILMFSENQK 404

Query: 355 KHIDAIE 361
           + +  IE
Sbjct: 405 RTMRNIE 411


>gi|68070111|ref|XP_676967.1| ATP-dependent RNA helicase [Plasmodium berghei strain ANKA]
 gi|56496896|emb|CAH98719.1| ATP-dependent RNA helicase, putative [Plasmodium berghei]
          Length = 715

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 204/386 (52%), Gaps = 46/386 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL     ++   L+  + +PT IQ  T P+ L   D+ G+A+TG+GKT +FVLP L  
Sbjct: 291 FSDLDFHESIL-NYLNEKFKEPTAIQKITWPIALSGKDLIGVAETGSGKTLAFVLPCLMH 349

Query: 63  LEKGRARV-----------------------------------------RMPRTLILEPT 81
           + K + +                                          R    LIL PT
Sbjct: 350 ILKHKQKEMEENGVEHIKNNEEKLSENNNNDNNYDPDFEKEFQNDDSENRKTYGLILLPT 409

Query: 82  RELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGK 141
           REL  QV +  + +    NL    + GG+P   Q   +++GAD+++ TPGR+LD+   G 
Sbjct: 410 RELCMQVLNEIKNFESELNLKAVAVYGGVPKYFQINNIKKGADIIVATPGRLLDYLENGI 469

Query: 142 LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ- 200
           + +     +VIDEADR+LDMGF   ++ I + V   +Q L  +AT  ++++K++ +F   
Sbjct: 470 INLLRCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFLTATWPEQVRKLAYDFCSF 529

Query: 201 NPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
           +P +I++     TA + IE   + + +   KK  L       ++     +IFC+ K+N  
Sbjct: 530 DPVKIQIGKSELTANKNIEQQVIVSSSIDLKKKLLDWLKDNYENNK--ILIFCDTKRNCD 587

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
           NLC  L    ++  +IHG+  QR R +IL+N+K     ++VA+D+A+RGLDI ++  V N
Sbjct: 588 NLCKELRYHQYNSLSIHGDKQQRERDRILNNYKNDRCNILVATDVASRGLDIKNISIVIN 647

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKA 345
           +D+PN  E+YIHRIGRTGRAG  G++
Sbjct: 648 YDIPNTIEDYIHRIGRTGRAGNKGQS 673


>gi|254380609|ref|ZP_04995975.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
 gi|194339520|gb|EDX20486.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
          Length = 504

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 134/433 (30%), Positives = 214/433 (49%), Gaps = 16/433 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +  +++  +   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 78  FADLDMPAQLLTTLTREGMATPFPIQAATLPNTLAGRDVLGRGRTGSGKTLAFGLALLAR 137

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                A    P  LIL PTRELA QV      Y +   L +A ++GG+P   Q   L  G
Sbjct: 138 TAGQSAESGQPLALILVPTRELAQQVTAALTPYARAVKLRLATVVGGMPIHRQAGALRAG 197

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D  +RG   +N + + V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 198 AEVVVATPGRLKDLIDRGDCRLNQVAVTVLDEADQMADMGFMPQVTALLDQVRPEGQRML 257

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+       T+EH  +  +     +         ++
Sbjct: 258 FSATLDRNVDLLVRRYLTDPVVHSVDPSQGAVTTMEHHVLHVHGADKHRTT-------TE 310

Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++G  I+F + K  V  L   L   G    A+HG   Q  R + L+ FK G + ++V
Sbjct: 311 IAARDGRVIMFLDTKHAVDRLTQDLLDSGVRAAALHGGKSQPQRTRTLARFKTGHVTVLV 370

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV     +    +
Sbjct: 371 ATNVAARGIHVDNLDLVVNVDPPTDPKDYLHRGGRTARAGESGSVVTLVTPNQRRE---M 427

Query: 361 EKLIEKK-VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
            +L++   +  L   + S +  L +I  AQ   A    P+   +   +R K++ +S+   
Sbjct: 428 ARLMQAAGITPLTTQVRSGDEALNRITGAQ---APSGIPVTITAPVSERPKRSTASRGRR 484

Query: 420 IPLKESEKISKLQ 432
            P+  + + S  Q
Sbjct: 485 GPVSAARRASLRQ 497


>gi|331219074|ref|XP_003322214.1| ATP-dependent RNA helicase DRS1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309301204|gb|EFP77795.1| ATP-dependent RNA helicase DRS1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 785

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 135/375 (36%), Positives = 206/375 (54%), Gaps = 27/375 (7%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL---- 63
           LS  V+  +       PTPIQ + IPL L   D+   + TG+GKT  +++P++  L    
Sbjct: 254 LSRPVLLGLSSMSITSPTPIQRQAIPLGLLGKDLVCSSVTGSGKTLGYMVPIVERLIWRD 313

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
           +KG  R R+   +IL PTRELA QV    +   +  +LT +L +GG+    Q  +L    
Sbjct: 314 KKGGGRTRV---MILTPTRELAVQVFQVGKLLARFTDLTFSLCVGGMDLRTQEAELRERP 370

Query: 124 DVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           +++I TPGR++DH  N     +  +EILVIDEADR+L+ GF   ++ I S  P +RQT+L
Sbjct: 371 EIVIGTPGRVIDHIRNTRGFSLETLEILVIDEADRILEEGFQDELEEIISNCPRSRQTML 430

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-----------ATYAQYSKK 231
           FSAT+ + +  +++  L  P RI+++ P STA  +   F+           A+    +++
Sbjct: 431 FSATVNESVADLAKLSLDKPIRIKIDPPKSTAAGLTQEFLKVKDSASNKKAASLTDVTRQ 490

Query: 232 CALLQQLLQSQDTMKNGIIFCNQK--KNVVNLCHSLEKQGFSVCA--IHGNIDQRSRMKI 287
             L+     S  +    IIF   K   + + +  SL    FS+ A  +HGN++Q+ R+  
Sbjct: 491 AILVTLCKASAFSKGRTIIFFRSKVGAHRMKIIFSL----FSLKAEELHGNLNQQQRLAA 546

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L  FK+G    ++A+DLA+RGLDI  V  V N++ P + + Y+HRIGRT RAG  G A T
Sbjct: 547 LQKFKDGETSFLLATDLASRGLDIKGVERVINYEPPTQYDVYLHRIGRTARAGTKGSALT 606

Query: 348 LVAKEDIKHIDAIEK 362
           LV + D K I    K
Sbjct: 607 LVGESDRKLIKEARK 621


>gi|324991749|gb|EGC23681.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK353]
          Length = 447

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 197/369 (53%), Gaps = 15/369 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L++    V+    +I  P+RELAAQ+   A     + +   + VA  +GG     Q  
Sbjct: 61  QMLDEEADTVQ---AVITAPSRELAAQIYQAARQLASFSEK-EIRVANYVGGTDKARQIG 116

Query: 118 KLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           KLE     ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P 
Sbjct: 117 KLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPK 176

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TIE+  ++T  +  K   + Q
Sbjct: 177 DLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGR-DKNAQIYQ 235

Query: 237 --QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             QLLQ    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K  
Sbjct: 236 ISQLLQPYMAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D 
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDD 351

Query: 355 KHIDAIEKL 363
             I  +EK+
Sbjct: 352 SDIRELEKM 360


>gi|308484167|ref|XP_003104284.1| hypothetical protein CRE_25008 [Caenorhabditis remanei]
 gi|308258253|gb|EFP02206.1| hypothetical protein CRE_25008 [Caenorhabditis remanei]
          Length = 572

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 130/378 (34%), Positives = 207/378 (54%), Gaps = 14/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LG+S  ++  +        TP+Q   IP +L   D+ G A+TGTGKT +F +P+L  
Sbjct: 42  FSELGVSSWIIQQLQTMHISTATPVQAACIPKILSGSDILGCARTGTGKTLAFAIPILQK 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L      +     LIL PTRELA Q+AD F   GK   L  ++++GG     Q ++L   
Sbjct: 102 LSIDPYGIY---ALILTPTRELAFQIADQFSAVGKPITLKCSVIVGGRSLIHQARELSDR 158

Query: 123 ADVLICTPGRILDHFNRGKLLM----NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +++ TPGR+ D  N    ++      I+  V+DEADRML+  +   ++ I   +P  R
Sbjct: 159 PHIVVATPGRLADLINSDAEIIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFEAIPAKR 218

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKCALLQ 236
           QTLL SAT+T+ +  + +   + P   E  +    ST + +E  FV      + K A L 
Sbjct: 219 QTLLLSATITNNINMLHKVSTRKPYFFEDKSKDAESTVDRLEQKFVV--CPVAVKDAYLV 276

Query: 237 QLLQ--SQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            +++  S+   K+ + IF    +    L +  E  GF V ++H  I Q+ R+  LS F+ 
Sbjct: 277 YVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRS 336

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            T+ +++ +D+A+RGLDIP V  V N +VP  A+ YIHR+GR+ RAGR G A + V + D
Sbjct: 337 KTLNVIICTDVASRGLDIPHVDLVVNHNVPQCAKTYIHRVGRSARAGRFGSALSFVTQYD 396

Query: 354 IKHIDAIEKLIEKKVDWL 371
           ++ + A+E+ I KK++ L
Sbjct: 397 VELLQAVEQTIGKKLEEL 414


>gi|219113561|ref|XP_002186364.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583214|gb|ACI65834.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 370

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 123/366 (33%), Positives = 196/366 (53%), Gaps = 12/366 (3%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA F +  L +L++  
Sbjct: 3   LKPDLLKGIYAYGFEKPSAIQQRAIRPIIRGRDVIAQSQSGTGKTAVFSVSSLQLLQENS 62

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
              R  + LIL PTRELA Q     +  G   N+     IGG         LE+G   +I
Sbjct: 63  ---RECQVLILSPTRELAEQTQKVVQALGDFMNVHCHACIGGKSLGQDLNALEKGGIQII 119

Query: 128 C-TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
             TPGR+ D   R  L  N+++ +++DEAD ML+ GF   I +I   +P + Q +L SAT
Sbjct: 120 SGTPGRVFDLIRRNALSPNHLKAMILDEADEMLNRGFKEQIYDIYRFLPASTQVVLMSAT 179

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLLQSQD 243
           +   +  ++  F+ +P RI V     T E I   F+    +   +   C L   L     
Sbjct: 180 LPASVLDMTRKFMNDPIRILVRRDELTLEGIRQFFINVEKEEWKFDTLCDLYDTL----- 234

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
           T+   +IFCN K+ V  L   ++ + F+V A+HG++DQ +R  ++  F+ G+ ++++A+D
Sbjct: 235 TITQAVIFCNTKQKVDWLAGKMKDKNFTVSAMHGDMDQGARDAVMEEFRSGSSRVLIATD 294

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           L  RG+D+  V  V  +D+P   E YIHRIGR+GR GR G A   V +ED + +  IE+ 
Sbjct: 295 LWGRGIDVQQVSLVICYDLPTNRELYIHRIGRSGRFGRKGIAINFVREEDTRLLRDIEQF 354

Query: 364 IEKKVD 369
              +++
Sbjct: 355 YSTQIE 360


>gi|125718667|ref|YP_001035800.1| ATP-dependent RNA helicase [Streptococcus sanguinis SK36]
 gi|125498584|gb|ABN45250.1| ATP-dependent RNA helicase, putative [Streptococcus sanguinis SK36]
          Length = 447

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 197/369 (53%), Gaps = 15/369 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L++    V+    +I  P+RELAAQ+   A     + +   + VA  +GG     Q  
Sbjct: 61  QMLDEEADSVQ---AVITAPSRELAAQIYQAARQLASFSEK-EIRVANYVGGTDKARQIG 116

Query: 118 KLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           KLE     ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P 
Sbjct: 117 KLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPK 176

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TIE+  ++T  +  K   + Q
Sbjct: 177 DLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGR-DKNAQIYQ 235

Query: 237 --QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             QLLQ    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K  
Sbjct: 236 ISQLLQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D 
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDD 351

Query: 355 KHIDAIEKL 363
             I  +EK+
Sbjct: 352 SDIRELEKM 360


>gi|332025244|gb|EGI65418.1| Putative ATP-dependent RNA helicase DDX10 [Acromyrmex echinatior]
          Length = 795

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 215/373 (57%), Gaps = 15/373 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL LS   + ++ +  YV+ T IQ ++I L LQ +D+ G A+TG+GKT +F++P+L I
Sbjct: 42  FSDLPLSRVTLKSLTENNYVEMTDIQKQSIGLALQGNDILGAAKTGSGKTLAFLIPILEI 101

Query: 63  LE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  K   R+    +LI+ PTRELA Q+ +   K G+ ++++  L+IGG   + + K++++
Sbjct: 102 LYCKQWTRLDGLGSLIITPTRELAYQIYETLRKVGQYHSISAGLIIGGKDLKFEKKRMDQ 161

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             +V+ICTPGR+L H +   L    N++ILV+DEADR LDMGF   + +I   +P  RQT
Sbjct: 162 -CNVIICTPGRLLQHMDENPLFNCVNMQILVLDEADRCLDMGFEKTMNSIIENLPPKRQT 220

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT T  ++ ++   L++P  + V+  S  +T E ++  ++        K A+L   
Sbjct: 221 LLFSATQTKSVKDLARLSLKDPLYVSVHEHSAHTTPEGLQQSYII--CSLEDKLAMLWSF 278

Query: 239 LQSQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +++    K  + F  C Q K +      L + G S+ A++G + Q  RM I  +F +   
Sbjct: 279 IRNHVKQKIIVFFSSCKQVKYIYEAFCRL-RPGISLLALYGTLHQLRRMNIYESFCKKQH 337

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA-FTLVAKEDIK 355
            ++ A+D+AARGLD P V  V   D P     YIHR GRT R    G++   L+  E++ 
Sbjct: 338 AVLFATDIAARGLDFPTVNWVVQMDCPEDVNAYIHRAGRTARFKSGGESLLVLLPSEEM- 396

Query: 356 HIDAIEKLIEKKV 368
               IE+L ++K+
Sbjct: 397 ---IIERLKQRKI 406


>gi|209882078|ref|XP_002142476.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209558082|gb|EEA08127.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 538

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 127/388 (32%), Positives = 207/388 (53%), Gaps = 32/388 (8%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           D+G+  +++ ++    + KPT IQ++ IP+ +Q  D+ GIA+TG+GKT +F+LP+L+ + 
Sbjct: 141 DIGIPTELLSSI---KHDKPTSIQMQCIPIGIQMRDLIGIAETGSGKTLAFLLPLLSYVY 197

Query: 65  K-----GRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKK 118
           K            P  LIL P RELA Q+    +K   K   +    ++GG   E Q  +
Sbjct: 198 KLPLLNFDTAQDGPYGLILAPARELALQIELEAQKLLKKEIGIRTLSIVGGRSVEKQAFE 257

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
           L RG +++I TPGR+ D   +   ++     +++DEADRM+DMGF   +  I   +P   
Sbjct: 258 LRRGVEIIIATPGRMRDCLEKSLTVLTQCNYIILDEADRMVDMGFEDCLNYILDQIPANY 317

Query: 178 ---------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
                                R T +FSATM  E++K++  +L+ P  + +    S  ++
Sbjct: 318 ERGSEEGNTKILKNRYGCRNHRITQMFSATMQSEVEKIARKYLKFPLYVTIGDMGSGKKS 377

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
           I+   +   ++  K+  L+  L   +  +   IIF NQKK V  +C S+   GF V  +H
Sbjct: 378 IQQ-ILNFISENKKQSTLINVLNNYEYAIPPIIIFVNQKKTVDIVCRSIASNGFKVIGLH 436

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G   Q  R   L+ F+ G   ++VA+D+A RG+DI +V  V N+DVP+  + Y HRIGRT
Sbjct: 437 GGKIQEQRENNLNLFRNGIYDILVATDVAGRGIDIANVNLVINYDVPSTIDTYTHRIGRT 496

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           GRAG+ G A + V ++D      ++K++
Sbjct: 497 GRAGKSGVAISFVTQQDSNLFSELKKIL 524


>gi|71756075|ref|XP_828952.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70834338|gb|EAN79840.1| mitochondrial DEAD box protein [Trypanosoma brucei]
 gi|261334879|emb|CBH17873.1| KREH1 [Trypanosoma brucei gambiense DAL972]
          Length = 546

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 130/365 (35%), Positives = 201/365 (55%), Gaps = 18/365 (4%)

Query: 3   FADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+DL   P  +   L  +G+   TPIQ  TIP++ + HD+ G+A TG+GKT +F +P L 
Sbjct: 119 FSDLDNLPDWLSKGLQSSGFSCTTPIQSYTIPVLDEGHDMIGLAPTGSGKTVAFAVPALK 178

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             +   +    PR ++L PTREL  Q A  F +      + V    GG P EAQ ++L  
Sbjct: 179 KFQW--SPNGSPRIVVLAPTRELVQQTAKVFHQLSSG-KVRVCEAYGGAPREAQARRLHN 235

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--Q 179
           G DVL+  PGR+ D    G ++ + +  LV DEADR+LDMGF   + +I       R  Q
Sbjct: 236 GCDVLVACPGRLKDFLQNGDVIFDEVSFLVFDEADRLLDMGFKVQLDDILGYFSSHRPAQ 295

Query: 180 TLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIE----HCFVATYAQYSKK--C 232
           T+++SAT    ++++++ +L QN   I   T  +  +  E    H F A   +   K   
Sbjct: 296 TMMWSATWPPVVEQLAQEYLSQNRYVIRSGTAGTGLQVNENIKQHIFFADAPEERVKTLV 355

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK----QGFSVCAIHGNIDQRSRMKIL 288
           +L+++    ++T K  +IF  ++ +  N  ++L +        +  +HG + QR R  I+
Sbjct: 356 SLIKEGKIDENTAKM-MIFVERQTDTENAAYALARMLGIHSRCIGVVHGGMQQRQRDHIM 414

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             FKEG I+++VA+D+A+RGLD PDV  V N   P   ++Y HRIGRTGRAGR G++FT 
Sbjct: 415 GIFKEGRIRILVATDVASRGLDFPDVTCVVNLIAPKNIDSYCHRIGRTGRAGRTGESFTF 474

Query: 349 VAKED 353
           + + D
Sbjct: 475 IGRSD 479


>gi|325185113|emb|CCA19605.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 711

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 121/359 (33%), Positives = 194/359 (54%), Gaps = 7/359 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L  K++  ++  G   PT IQ +T P+ L   D+ GIA+TG+GKT +F +PM+  
Sbjct: 185 FMQLQLDRKILNLLMKLGLEAPTAIQAQTFPVALSGRDMIGIAKTGSGKTLAFTIPMIWH 244

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R  ++   P  +++ PTRELA Q+    + + K Y      + GG+    Q + L 
Sbjct: 245 VMDQRELSKGEGPIAIVISPTRELAHQIYTQVKMFTKLYGAECVAVYGGVGKWEQVQALR 304

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA+VLI TPGR+++   +  +  N +  +V+DEADRM ++GF   ++++   +   RQ+
Sbjct: 305 KGAEVLIATPGRLIELIRKKTIKTNRVTFVVLDEADRMFELGFESQLRSMLGQLRPDRQS 364

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++++   L NP ++ V       E I    V     + KK   L + L+
Sbjct: 365 LLFSATFRPRIEQLARAILHNPIKVTVGKAGQANEVISQIPVVLL-NHGKKWEWLMKNLE 423

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF N K     L  +L+   +  C +HG+  Q  R   L++FK G   +MV
Sbjct: 424 RIVDQGRVLIFANSKVGCEELSKNLDAMHYRCCLLHGDKSQYDRSSALADFKNGKCPVMV 483

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG----RHGKAFTLVAKEDIK 355
           A+D+A+RGLDI DV  V N+DV    + ++HRIGRTGR G      G A+TL+  ++ +
Sbjct: 484 ATDVASRGLDIRDVKTVVNYDVAKNIDIHVHRIGRTGRMGVDGFEPGVAYTLITNKETQ 542


>gi|308174303|ref|YP_003921008.1| DEAD-box RNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|307607167|emb|CBI43538.1| DEAD-box RNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|328554249|gb|AEB24741.1| DEAD-box RNA helicase [Bacillus amyloliquefaciens TA208]
          Length = 438

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 127/369 (34%), Positives = 196/369 (53%), Gaps = 19/369 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L P ++ AV   G+ +PT IQ + IP VL+   V G +QTGTGKT +++LP+L  
Sbjct: 6   FDGYNLKPFIIDAVHRLGFYEPTDIQKRLIPAVLKNESVIGQSQTGTGKTHAYLLPILNR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           ++ G   V+    +I  PTRELA Q+   A    +  ++  +     IGG   +    KL
Sbjct: 66  IDPGSDTVQ---AVITAPTRELANQIYQEALKITQGAEDEQIRTKCFIGGTDKQKSIDKL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +++ TPGRI D      L +   + LVIDEAD MLD+GF+  +  I S +P   Q
Sbjct: 123 KTQPHLVVGTPGRIADLIKAQALNVYKAQSLVIDEADLMLDLGFLEDVDYIGSRMPEELQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+ ++L+   + +++NPK   V     TAE IEH  V +  +   K        
Sbjct: 183 MLVFSATIPEKLKPFLKKYMENPKYAHVEPKRITAEKIEHVLVPSKQRDKDKLLF----- 237

Query: 240 QSQDTMKN-----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
              D M N     GI+F N K    ++   L ++G  +  +HG +  R R K++    + 
Sbjct: 238 ---DMMSNLNPYLGIVFANTKNTADHIAKYLTEKGMRIGLLHGGLTPRERKKVMKQINDL 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
               ++A+DLAARG+DI  V HV N+++P+  + Y+HR+GRT RAG  G+A T+    D 
Sbjct: 295 EFTYVIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQALTIYELSDE 354

Query: 355 KHIDAIEKL 363
             +  +EK+
Sbjct: 355 DALVRLEKM 363


>gi|297563397|ref|YP_003682371.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296847845|gb|ADH69865.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 462

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 113/332 (34%), Positives = 182/332 (54%), Gaps = 9/332 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G   P+ IQ  T+P  L   DV G ++TG+GKT +F L +L  L+  +A  R P  ++L 
Sbjct: 71  GLTVPSEIQAATLPNSLAGRDVLGRSRTGSGKTLAFGLALLAQLDGRKAEPRRPLAVVLA 130

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA QVAD    Y ++  +    ++GG+P   Q++ L +G ++++ TPGR+ D   R
Sbjct: 131 PTRELAQQVADALAPYARSVGVHATTVVGGMPISRQSRALRQGVELVVATPGRLRDLMER 190

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
           G  +++ +E+ V+DEAD+M DMGF+P +  I   VP   + +LFSAT+   +  +   FL
Sbjct: 191 GDCVLDQVEVTVLDEADQMTDMGFMPQVTAILQQVPADGRRMLFSATLDRNVDTLVRRFL 250

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG--IIFCNQKKN 257
            +P    V+       T+EH  +  +  ++ K  ++ ++       ++G  I+F + K+ 
Sbjct: 251 NDPVVHSVDLSEGAVSTMEHHVM--HVSHADKQDVVTRI-----AARDGRVIMFLDTKRA 303

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
           V  +   L   G     +HG   Q  R + L  FK G +  +VA+++AARG+ +  +  V
Sbjct: 304 VDRMAEHLLANGVLAAPLHGGRSQPQRTRTLDQFKRGAVTALVATNVAARGIHVDGLDLV 363

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 364 VNIDPPTDHKDYLHRGGRTARAGEAGSVVTLV 395


>gi|320009868|gb|ADW04718.1| DEAD/DEAH box helicase domain protein [Streptomyces flavogriseus
           ATCC 33331]
          Length = 522

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 124/347 (35%), Positives = 184/347 (53%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +   ++ A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 83  FADLDMPAPLLAALAAEGVSVPFPIQGATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 142

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y ++  L +A ++GG+    Q   L  G
Sbjct: 143 TAGNRADARRPLALVLVPTRELAQQVTDALTPYARSLRLRLATVVGGMSIGRQASALRGG 202

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D   RG   ++ + I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 203 AEVVVATPGRLKDLIERGDCKLDRVAITVLDEADQMADMGFMPQVTELLDQVNPEGQRML 262

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  +    T+EH  +  Y Q + K A   ++    
Sbjct: 263 FSATLDRNVDLLVRRYLHDPVVHSVDPAAGAVTTMEHHVL--YVQGADKYATTTEIAARD 320

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F + K  V  L   L   G    A+HG   Q  R + L  FK G + ++VA+
Sbjct: 321 GRV---IMFLDTKHAVDKLTDHLLSSGVRAAALHGGKSQPQRTRTLDRFKTGHVTVLVAT 377

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARG+ + ++  V N D P+  ++Y+HR GRT RAG  G   TLV
Sbjct: 378 NVAARGIHVDNLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTLV 424


>gi|257869404|ref|ZP_05649057.1| DEAD-box ATP dependent DNA helicase [Enterococcus gallinarum EG2]
 gi|257803568|gb|EEV32390.1| DEAD-box ATP dependent DNA helicase [Enterococcus gallinarum EG2]
          Length = 448

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 127/366 (34%), Positives = 201/366 (54%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F      P +  A+ +  +  PT +Q K IP++ +   V G +QTG+GKT +F+LP++
Sbjct: 1   MSFESFKFQPFIYEALAEKKFTSPTEVQEKLIPVIQKGRSVVGQSQTGSGKTHTFLLPLM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG--KNYNLTVALLIGGIPFEAQNKK 118
             ++  +  V++   +I  P+RELA Q+    ++    +   + V   +GG   + Q  +
Sbjct: 61  DQIDPQKDEVQV---VITAPSRELATQIYQAAKQLAEFQQPEIRVTNFVGGTDKQRQMDR 117

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+ +   ++I TPGRILD  N   L ++     VIDEAD  LDMGF+  +  I S +P  
Sbjct: 118 LQNQQPQLVIGTPGRILDMINEQALAVHTARAFVIDEADMTLDMGFLEEVDQIASRLPEK 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+ ++L+   + +L+NP   E+   +  +E+IE+  ++T  +   K  L+ Q
Sbjct: 178 LQMLVFSATIPEKLRPFLKKYLENPLIEEIRPKAVISESIENWLISTKGK--DKNQLVYQ 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL +       I+F N K  V  L   L+++G  V  IHG+I  R R +++   +    Q
Sbjct: 236 LLTTGHPYL-AIVFANTKSRVDELTDYLKEKGLKVAKIHGDITPRERKRVMRQVQNLEYQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N ++P   + +IHR+GRTGR    G A TL    D + I
Sbjct: 295 YVVATDLAARGIDIEGVSHVINAEIPADLDFFIHRVGRTGRNQLAGTAITLYDPSDEQAI 354

Query: 358 DAIEKL 363
            AIE L
Sbjct: 355 QAIEDL 360


>gi|329115610|ref|ZP_08244332.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
 gi|326695038|gb|EGE46757.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
          Length = 400

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 138/391 (35%), Positives = 195/391 (49%), Gaps = 19/391 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL P +      AG   PTP+Q   IP +L   DV   A TGTGKTA++ LP+   
Sbjct: 5   FHDLGLDPALCAHAQQAGMAAPTPVQQAAIPAILDGKDVLVRAPTGTGKTAAYALPLSQK 64

Query: 63  LEKGRARVRMPR-TLILEPTRELAAQVADNF-------EKYGKNYNLTVALLIGGIPFEA 114
           L K R     PR  L+L PTREL  QV   F       +K  K   +T+  L GG     
Sbjct: 65  LLKSRK----PRFVLVLVPTRELVLQVEKVFRTCLEESKKGQKQTAVTLVPLFGGSDRAE 120

Query: 115 QNKKLER--GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           Q   L +  G  +LI TPGR+LD  +     ++    LV+DE DR+    F    + + S
Sbjct: 121 QEHFLAQATGRRILIATPGRLLDFVSNRICDLSECGYLVLDEGDRLFSPEFQEDTETLLS 180

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +P  RQTL+ SAT  + L+    N L  P  I +         I     A +   S+K 
Sbjct: 181 YLPSMRQTLVLSATQPESLKSTLLNLLHKPVEISIEQAPQKRGPIRQA--ALFLDPSQKP 238

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             +++       M++ IIF   K     L   L+K   +   +HG+I Q  R   +++F+
Sbjct: 239 GFIKEFFSRAPKMRS-IIFVRTKAEADQLAAILKKARLAAAPLHGDIAQDKRTSTVASFE 297

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G + ++VA+D+AARGLD+P V  V N+DVP++ E Y+HRIGRTGR G  G A TL   +
Sbjct: 298 SGRLFILVATDVAARGLDVPSVKQVINYDVPDQPETYLHRIGRTGRGGEKGSALTLCTMD 357

Query: 353 DIKHIDAIEKLIEKKVDWLNGD--LSSLNPP 381
           D K +  IE   + K+  ++ +  L    PP
Sbjct: 358 DRKSLRQIEVGAQVKLRIISAEQALPVAKPP 388


>gi|291484959|dbj|BAI86034.1| hypothetical protein BSNT_03747 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 447

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 130/377 (34%), Positives = 206/377 (54%), Gaps = 16/377 (4%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P ++ AV   G+ +PT IQ + IP VL++  V G +QTGTGKT +++LP+L  ++  +
Sbjct: 20  LKPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLNKIDPAK 79

Query: 68  ARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
             V++   +I  PTRELA Q+   A    +  +   +     IGG   +    KL+    
Sbjct: 80  DVVQV---VITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLKIQPH 136

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGRI D      L ++  E LVIDEAD MLDMGF+  +  I S +P   Q L+FS
Sbjct: 137 LVVGTPGRIADLIKEQALSVHKAESLVIDEADLMLDMGFLADVDYIGSRMPEDLQMLVFS 196

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT+ ++L+   + +++NPK   V     TA  IEH  + +  ++  K  LL  ++   + 
Sbjct: 197 ATIPEKLKPFLKKYMENPKYAHVEPKQVTAAKIEHILIPS--KHRDKDKLLFDIMSHLNP 254

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
              GI+F N K    ++   L  +G  +  +HG +  R R K++    +     ++A+DL
Sbjct: 255 YL-GIVFANTKNTADHIAQYLTGKGMKIGLLHGGLTPRERKKVMKQINDLEFTYVIATDL 313

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL- 363
           AARG+DI  V HV N+++P+  + Y+HR+GRT RAG  G+A T+    D   +  +EK+ 
Sbjct: 314 AARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQAMTIYELTDEDALVRLEKMG 373

Query: 364 IE------KKVDWLNGD 374
           IE      +K +W  GD
Sbjct: 374 IEFDYLELEKGEWKKGD 390


>gi|169343937|ref|ZP_02864931.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens C str. JGS1495]
 gi|169297939|gb|EDS80031.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens C str. JGS1495]
          Length = 405

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 122/371 (32%), Positives = 208/371 (56%), Gaps = 8/371 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           MD F  LGLS +V+ +++  G  +PT IQ K IP +L   +V G A+TGTGKT +++LP+
Sbjct: 1   MDKFLKLGLSEEVLKSLVGLGIEEPTDIQEKAIPEILSGKNVIGKAETGTGKTLAYLLPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVAD--NFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +  ++  +  ++    +IL PT EL  Q+ +  N  K G    +T   L+G    + Q +
Sbjct: 61  IEKIDDSKNEMQ---AIILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQME 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+    +L+ T GRIL+  N+ K+  N I+ +VIDE D++LD   I  ++++    P  
Sbjct: 118 KLKNKPHILVGTTGRILELINKKKITTNTIKTIVIDEGDKLLDFINIKDVKSVVKSCPRD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSATM ++  + ++  +   + I+    +   E IEH +     +   K   L++
Sbjct: 178 TQKLIFSATMNEKALETADELIGTSELIQAKAANKVNENIEHGYFQ--VELRDKIDFLRK 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ +    K  I+F N   NV N+   L+       ++HG+ ++  R K L +F+ G  +
Sbjct: 236 LIHAIGDEKKIIVFINNSYNVHNVIQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAK 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ SD++ARGLDI    H+ N D+P  ++NY+HR+GR GRAG  G A++L   ++ K I
Sbjct: 296 VLITSDVSARGLDIKGATHIVNLDIPMNSQNYLHRVGRVGRAGEKGFAYSLADYKEEKII 355

Query: 358 DAIEKLIEKKV 368
              E+ ++ K+
Sbjct: 356 VKCERQLKIKI 366


>gi|268529640|ref|XP_002629946.1| Hypothetical protein CBG03667 [Caenorhabditis briggsae]
 gi|187036409|emb|CAP24509.1| hypothetical protein CBG_03667 [Caenorhabditis briggsae AF16]
          Length = 565

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 129/376 (34%), Positives = 201/376 (53%), Gaps = 13/376 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LG+S  +   +        TP+Q   IP +L   D+ G A+TGTGKT +F +P+L  
Sbjct: 95  FSELGVSSWITQQLQTMHIKTATPVQAACIPRILDGSDILGCARTGTGKTLAFAIPILQK 154

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L      +     LIL PTRELA Q+AD F   GK   L  ++++GG     Q ++L   
Sbjct: 155 LSIDPYGIY---ALILTPTRELAFQIADQFTAVGKPITLKCSVIVGGRSLIHQARELSER 211

Query: 123 ADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++ TPGR+ D      +++   I+  V+DEADRML+  +   ++ I   +P  RQTL
Sbjct: 212 PHIVVATPGRLTDLIESDPEVIAKKIQFFVLDEADRMLEGQYNDQLKPIFQSIPEKRQTL 271

Query: 182 LFSATMT---DELQKVSEN---FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
           L SAT+T   + L KVS     F ++  + +  T     +    C VA    Y      +
Sbjct: 272 LLSATITQNINTLHKVSTRKPYFFEDKGKDDETTVDRLEQKFVVCPVAVKDAY---LVYV 328

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +    ++   + +IF    +    L +  E  GF V ++H  I Q+ R+  LS F+  T
Sbjct: 329 VKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRSKT 388

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q+++ +D+A+RGLDIP V  V N +VP   + YIHR+GR+ RAGR G A + V + D++
Sbjct: 389 LQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVE 448

Query: 356 HIDAIEKLIEKKVDWL 371
            + A+EK I KK+D L
Sbjct: 449 LLQAVEKTIGKKLDEL 464


>gi|224146601|ref|XP_002326066.1| predicted protein [Populus trichocarpa]
 gi|222862941|gb|EEF00448.1| predicted protein [Populus trichocarpa]
          Length = 530

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 122/371 (32%), Positives = 192/371 (51%), Gaps = 36/371 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D+ L   ++  +    Y +PT IQ + + + L   D+ G A+TG+GKTA+F +PM+  
Sbjct: 116 FEDMCLHQSIMKDIAHHEYTRPTLIQAQAMTVALSGRDLLGCAETGSGKTAAFTIPMIQH 175

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
            + +    R   P  ++L PTRELA Q+    +++ ++  +   A+++GG     Q  +L
Sbjct: 176 CLAQPPVQRGDGPLAMVLAPTRELAQQIEKEVKRFSRSLESFRTAIVVGGTKSADQGSEL 235

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DV++ TPGR++DH  +G   ++ I  +V+DEADRMLDMGF P I+ +   +P   Q
Sbjct: 236 RAGVDVIVATPGRLIDHLQQGNTSLSRISFIVLDEADRMLDMGFEPQIREVMHNLPEKHQ 295

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC--ALL-- 235
           TLLFSATM  E++ +++ +L +P +++V   SS    +        A     C  ALL  
Sbjct: 296 TLLFSATMPVEIETLAQEYLISPVQVKVGKVSSPTANVSQILTKVSASEKIDCLLALLVE 355

Query: 236 --QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
              Q  +S  +    I+F  +K     +  +L  QG                        
Sbjct: 356 DASQAEKSNQSFPLTIVFVERKTRCNEVAEALVAQGLQA--------------------- 394

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
                 VA+D+A+RGLD+  V HV N D+P   E+Y+HRIGRTGRAG  G+A +     D
Sbjct: 395 ------VATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTDRD 448

Query: 354 IKHIDAIEKLI 364
           +  +  I+K I
Sbjct: 449 LFLVAQIKKAI 459


>gi|168207373|ref|ZP_02633378.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens E str. JGS1987]
 gi|168216902|ref|ZP_02642527.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens NCTC 8239]
 gi|182624735|ref|ZP_02952516.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens D str. JGS1721]
 gi|170661259|gb|EDT13942.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens E str. JGS1987]
 gi|177910132|gb|EDT72526.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens D str. JGS1721]
 gi|182381051|gb|EDT78530.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens NCTC 8239]
          Length = 405

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 122/371 (32%), Positives = 208/371 (56%), Gaps = 8/371 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           MD F  LGLS +V+ +++  G  +PT IQ K IP +L   +V G A+TGTGKT +++LP+
Sbjct: 1   MDKFLKLGLSEEVLKSLVGLGIEEPTDIQEKAIPEILNGKNVIGKAETGTGKTLAYLLPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVAD--NFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +  ++  +  ++    +IL PT EL  Q+ +  N  K G    +T   L+G    + Q +
Sbjct: 61  IEKIDDSKNEMQ---AIILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQME 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+    +L+ T GRIL+  N+ K+  N I+ +VIDE D++LD   I  ++++    P  
Sbjct: 118 KLKNKPHILVGTTGRILELINKKKITTNTIKTIVIDEGDKLLDFINIKDVKSVVKSCPRD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSATM ++  + ++  +   + I+    +   E IEH +     +   K   L++
Sbjct: 178 TQKLIFSATMNEKALETADELIGTSELIQAKAANKVNENIEHGYFQ--VELRDKIDFLRK 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ +    K  I+F N   NV N+   L+       ++HG+ ++  R K L +F+ G  +
Sbjct: 236 LIHAIGDEKKIIVFINNSYNVHNVIQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAK 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ SD++ARGLDI    H+ N D+P  ++NY+HR+GR GRAG  G A++L   ++ K I
Sbjct: 296 VLITSDVSARGLDIKGATHIVNLDIPMNSQNYLHRVGRVGRAGEKGFAYSLADYKEEKII 355

Query: 358 DAIEKLIEKKV 368
              E+ ++ K+
Sbjct: 356 VKCERQLKIKI 366


>gi|116628386|ref|YP_821005.1| superfamily II DNA/RNA helicase [Streptococcus thermophilus LMD-9]
 gi|116101663|gb|ABJ66809.1| Superfamily II DNA and RNA helicase [Streptococcus thermophilus
           LMD-9]
          Length = 447

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 200/366 (54%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ +  + +PTP+Q K IP+V    D+ G ++TG+GKT +F+LP  
Sbjct: 1   MSFKDFNFKDYIQEALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
            I EK     R  + +I  P+RELA Q+  + ++  K+ +  + ++  +GG   + Q +K
Sbjct: 59  -IFEKLNPESRDVQVVITAPSRELATQIYQSTKQIAKHSDTEIRVVNYVGGTDKQRQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+     ++I TPGRI D F  G L ++     V+DEAD  +DMGF+  +  I +  P  
Sbjct: 118 LKVAQPHIVIGTPGRIYDLFKSGDLAIHKAHTFVVDEADMTMDMGFLATVDKIAASFPKE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  V+T  + +K   +L+ 
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEQIKTSTVIADTIDNWLVSTKGR-NKNGQILEM 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   Q  +   +IF N K+   +L   L   G  V  IHG I  R R +I++  K+   +
Sbjct: 237 LKGMQPYL--AMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLEFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 RELEKM 360


>gi|145476155|ref|XP_001424100.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391163|emb|CAK56702.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1238

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 128/367 (34%), Positives = 204/367 (55%), Gaps = 26/367 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + +A  G    ++ ++    +  PT IQ    P++L  +DV GIAQTG+GKT +++LP L
Sbjct: 94  LSWASAGFPIPILESIEQLQFKSPTIIQSVVFPIILAGYDVIGIAQTGSGKTIAYLLPGL 153

Query: 61  TILEKGRA-------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             +   +        +   P+ LIL PTRELA Q+    + + +NY L    + GGI   
Sbjct: 154 IQITSQKTEELNNTKKQNGPQMLILVPTRELAMQIESEIQLFTQNYRLKTLCIYGGIN-- 211

Query: 114 AQNKK-----LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
             N+K     L R  ++L+ TPGR+LD    G   + N+  LVIDEADR+L++GF   I+
Sbjct: 212 --NRKNQFYNLGRFPNILVATPGRLLDFLREGATTLANVSYLVIDEADRLLELGFEDTIR 269

Query: 169 NITSLVPFTRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSST-AETIEHCFVATYA 226
            I   + F RQT+ FSAT    ++ ++ +F Q +P  +++   + T  + I+   +  + 
Sbjct: 270 EIVQQIRFDRQTVFFSATWPKAVKDLAFDFCQYSPIYVQIGKSNLTINKNIDQEIICLFQ 329

Query: 227 QYSKKCALLQQLLQSQDTMK---NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
           +       LQ+LL   DT+K     +IF  QK+    L  ++  +G+   A+HG+  Q  
Sbjct: 330 K-----DKLQKLLDILDTLKISDKVLIFSEQKQRCEQLSINMADKGYYTIALHGDKTQPQ 384

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R +I+  F+ G  +L+ A+DLA+RGLD+ D+  V N+D P   ++YIHRIGRTGR  + G
Sbjct: 385 RDEIMKAFRSGYTRLLCATDLASRGLDVTDITVVINYDFPKYFDDYIHRIGRTGRGEKKG 444

Query: 344 KAFTLVA 350
           KAF+ +A
Sbjct: 445 KAFSFLA 451


>gi|327554933|gb|AEB00820.1| vasa-like protein [Penaeus monodon]
          Length = 707

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 135/391 (34%), Positives = 214/391 (54%), Gaps = 28/391 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  + L P ++  +  AGY  PTP+Q  TIP V+   D+ G AQTG+GKTA+F+LPML  
Sbjct: 267 FQTMNLRPLLLENIAKAGYGCPTPVQKYTIPNVMNGRDIMGCAQTGSGKTAAFLLPMLHH 326

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           IL+             P  L++ PTRELA Q+     K+  +      +  GG     Q 
Sbjct: 327 ILDNNCPSNAFEEPAQPTGLVICPTRELAIQIMREARKFSHSSVAKCCVAYGGAAGFHQL 386

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI---TSL 173
           K +  G  +L+ TPGR+LD   +GK++ ++++ LV+DEADRMLDMGF+  I+ +    ++
Sbjct: 387 KTIHSGCHILVATPGRLLDFVEKGKVVFSSLKYLVLDEADRMLDMGFLSSIKTVINHKTM 446

Query: 174 VPFT-RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            P T R TL+FSAT  +E+Q+++  FL N   + V +  +    ++   V    ++ KK 
Sbjct: 447 TPTTDRITLMFSATFPNEIQELASAFLNNYLFVVVGSVGAANTDVKQ-EVLCVPKFEKKA 505

Query: 233 ALLQQ----LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            L++     L+ ++D  +  ++F  QK+    +   L ++ F    +HG+  Q  R + L
Sbjct: 506 KLVEMCEEILINAED--EKILVFVEQKRVADFVGTYLCEKNFRATTMHGDRYQAQREQAL 563

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG----- 343
           + F+ G   ++VA+ +AARGLDI  +G V N+D+P   + Y+HRIGRTGR G  G     
Sbjct: 564 TEFRTGVYNILVATAVAARGLDIKGIGVVVNYDLPKEIDEYVHRIGRTGRLGNRGLSISF 623

Query: 344 ---KAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
              +A   + K+ +K +   E+ I    DWL
Sbjct: 624 YDEEADACLTKDLVKVLSEAEQTIP---DWL 651


>gi|283470836|emb|CAQ50047.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 448

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 127/381 (33%), Positives = 205/381 (53%), Gaps = 13/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ + IP +L+R ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++   + ++ P+ +++ PTRELA Q+ D      +   +++V + IGG   E   ++   
Sbjct: 66  ID---SEIKEPQAIVVAPTRELAQQLYDAANHLSQFKADVSVKVFIGGTDIEKDRQRCNA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L ++    LVIDEAD M+D+G I  +  I + +       
Sbjct: 123 QPQLIIGTPTRINDLAITGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNANIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +LQ     +L +P+ + V++     + IE   + T     K  A +++ L  
Sbjct: 183 VFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPT-----KGAAKVEKTLNL 237

Query: 242 QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            D +     IIFCN + N  +L  SL + G  V  IHG +  R R + +   +    Q +
Sbjct: 238 IDILNPYLCIIFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYV 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +ASDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  
Sbjct: 298 IASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISL 357

Query: 360 IEK--LIEKKVDWLNGDLSSL 378
           IE    +   VD  +G+L  +
Sbjct: 358 IEDRGFVFNTVDIKDGELKEV 378


>gi|12325365|gb|AAG52624.1|AC024261_11 photosystem II protein psbT, putative, 5' partial; 92652-90780
           [Arabidopsis thaliana]
          Length = 347

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 122/354 (34%), Positives = 188/354 (53%), Gaps = 11/354 (3%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84
           + IQ + +  +L+  DV   AQ+GTGKT+   + +  I+     +V++   L+L P+REL
Sbjct: 1   SEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQV---LVLSPSREL 57

Query: 85  AAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLM 144
           A+Q     +  G + N+     IGG       KKLERG   +  TPGR+ D   RG L  
Sbjct: 58  ASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQT 117

Query: 145 NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKR 204
             +++LV+DE+D ML  G    I ++   +P   Q  L SAT+  E+ +++E F+ +P R
Sbjct: 118 KAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQEILEMTEKFMTDPVR 177

Query: 205 IEVNTPSSTAETIEHCFVAT---YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNL 261
           I V     T E I+  +V       ++   C L  +L     T+   IIFCN ++ V  L
Sbjct: 178 ILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGRL-----TINQAIIFCNTRQKVDWL 232

Query: 262 CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321
              +    F V ++HG+  Q+ R  I++ F+    ++++ASD+ ARG+D+  V HV N+D
Sbjct: 233 TEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYD 292

Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDL 375
           +PN  E YIHRIGR GR GR G A   V   D+K +  IE+    K+  +  DL
Sbjct: 293 IPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKDIERHYGTKIREMPADL 346


>gi|300934004|ref|ZP_07149260.1| putative ATP-dependent RNA helicase [Corynebacterium resistens DSM
           45100]
          Length = 386

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 122/353 (34%), Positives = 184/353 (52%), Gaps = 5/353 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  +V A+   G   P PIQ   IP  +Q  D+ G   TG+GKT +F LP++  
Sbjct: 8   FADLGLSLPIVRALNQEGVKHPFPIQAAAIPQAIQGRDILGRGPTGSGKTFTFGLPIIES 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++G +  + PR LIL PTRELAAQV    E         V  ++GG+        L R 
Sbjct: 68  LQRGASAPKKPRALILVPTRELAAQVRQRLEPIANAAGQRVLEVVGGVKISRNITALARP 127

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR  D  ++ +L  + + IL +DEAD+M DMGF+P +  +   +    Q LL
Sbjct: 128 VDILVATPGRAQDLLDQKQLDFSEVRILALDEADQMADMGFLPQVTRLLQRLNSECQHLL 187

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  ++Q +   F+  P        +++ ++++H      A + ++ A    +++  
Sbjct: 188 FSATLDGDVQILVNRFMNEPVTHSTGEATASVDSMQHLL----AVFDERDARNAAIIELG 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  ++F   K  V      L + G     +HG   Q +R   L  F  G + ++VA+
Sbjct: 244 KLGRRTVMFMRTKYAVDRQVKKLVRAGVPAVGLHGKKGQSTRENALGAFSTGEVSVLVAT 303

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           D+AARG+D+ DV  V + D P   + Y+HR GRT RAG  G   TL    DIK
Sbjct: 304 DIAARGIDVKDVELVVHIDPPAEHKAYVHRAGRTARAGAEGTVVTLT-YADIK 355


>gi|270358682|gb|ACZ81471.1| CNB00610 [Cryptococcus heveanensis]
          Length = 974

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 158/532 (29%), Positives = 261/532 (49%), Gaps = 78/532 (14%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPMLTIL 63
           L +S  ++ ++L   +  PTPIQ  +IP  L     D+ G+A+TG+GKT ++++P+L  +
Sbjct: 34  LNISDDLIKSLLQRKFKSPTPIQRSSIPGALSTPPRDILGMARTGSGKTLAYLIPLLQRI 93

Query: 64  EKGRARVRMPRTLILEPTRELAAQVAD-------------------NFEKYGKNYNLTVA 104
               + V  PR LIL P+RELA Q+                       ++ GK  +L  A
Sbjct: 94  GSSHSDVACPRALILCPSRELAVQIYSVGKDLARGTIRGKGKGKEKTSDRDGKVESLRWA 153

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
           L+IGG   + Q  K+ R  DV+I TPGR L      +L + +++++V DEADR+ +MGF 
Sbjct: 154 LIIGGEGLDTQFDKMSRNPDVVIATPGRFLHLAVEMRLDLRHLQVVVYDEADRLFEMGFD 213

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
             ++ I S +P TRQ LLFSAT+   + + ++  L NP  I +++    +  ++  F + 
Sbjct: 214 VQLREILSRLPPTRQNLLFSATLPSSVAEFAKAGLVNPLLIRLDSEHKISPDLDLRFFSV 273

Query: 225 YAQYSKKCALLQQL-------LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
                K  ALL  L       L S D   +   I+F + K +V  +   L+  GF    I
Sbjct: 274 -KPIEKDAALLVLLKDVIKVPLSSGDNSHSPQAIVFVSTKHHVDYINELLKTAGFRSSHI 332

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           + ++DQ +R + L +F+     ++V +D+AARGLDIP + HV N+D P+    ++HR+GR
Sbjct: 333 YSSLDQVARHQQLHHFRNRLTDVLVVTDVAARGLDIPVMDHVVNYDFPSGPRVFVHRVGR 392

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKL--------------------IEKKVDWLNGDL 375
           T RAGR G A++LV ++D  ++  ++                      I + ++++   L
Sbjct: 393 TARAGRKGNAWSLVTRDDWPYLFDLQTFLGLDRMGSNGDMLRNIPDDNISQMIEYITTSL 452

Query: 376 SSLNPPLEKIDIAQHNHARKNNPIPQKSTG------FDRRK---KNYSSQKSHIPLK--- 423
               P LE     Q N  RK   + ++S G      + + K   K   S ++HIP+    
Sbjct: 453 DEQAPNLE----MQRNVMRKGQAMFERSRGKADPASYRKAKLFGKELDSGQAHIPVDIGL 508

Query: 424 ----ESEKISKLQQDIQENDADS-------LGFRGNMPAFMLPKNRGKLNDK 464
               ES  +S   + +    A +       +G RG+     L KNR K+  +
Sbjct: 509 QERGESSLVSGRSRLLSSVAAYTPAETIFEVGKRGDASTATLMKNRRKVASR 560


>gi|261187455|ref|XP_002620151.1| ATP-dependent RNA helicase DBP3 [Ajellomyces dermatitidis SLH14081]
 gi|239594201|gb|EEQ76782.1| ATP-dependent RNA helicase DBP3 [Ajellomyces dermatitidis SLH14081]
 gi|239609244|gb|EEQ86231.1| ATP-dependent RNA helicase [Ajellomyces dermatitidis ER-3]
 gi|327356484|gb|EGE85341.1| ATP-dependent RNA helicase DBP3 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 489

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 124/343 (36%), Positives = 191/343 (55%), Gaps = 12/343 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML--TILEKGRARVRMPRTLIL 78
           + KPTPIQ  T P +    DV G+A+TG+GKT +F +P +   +             +I+
Sbjct: 92  FSKPTPIQSVTWPFLFAGRDVIGVAETGSGKTLAFGVPCIRKVLAINASRSSSRISAVII 151

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA Q+ D   K+     + +A + GG   + Q + L++ A V++ TPGR+ D  +
Sbjct: 152 TPTRELAMQIYDQLVKFTPK-GVGLACIYGGASKDDQRRALKK-ASVVVATPGRLKDLHS 209

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--QTLLFSATMTDELQKVSE 196
              L +  ++ LV+DEADRMLD GF   I++I   +P +R  QT++F+AT    ++K++ 
Sbjct: 210 DQSLDLQKVKYLVLDEADRMLDKGFEQDIKDIVGAMPSSRKRQTVMFTATWPMSVRKLAA 269

Query: 197 NFLQNPKRIEVNTPSST---AETIEHCFVATYAQYSKK---CALLQQLLQSQDTMKNGII 250
            F+++P  + +    S+   A T     V       K+    +LL Q  + ++ M   ++
Sbjct: 270 TFMKDPVTVTIGGDLSSDIRANTRIKQIVEVVKPEDKEYRLLSLLNQYQRGKNAMDKVLV 329

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           FC  KK    +   +  +GF V  IHG+++Q  R K L  FK G++ L+VA+D+AARGLD
Sbjct: 330 FCLYKKEATRIERFIRSKGFKVAGIHGDMNQTERFKSLDAFKSGSVPLLVATDVAARGLD 389

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           IP V  V N   P   E+Y+HRIGRTGRAG  G A T+  + D
Sbjct: 390 IPAVKLVLNVTFPLTVEDYVHRIGRTGRAGSDGLAITMFTEND 432


>gi|258563984|ref|XP_002582737.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237908244|gb|EEP82645.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 538

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 133/387 (34%), Positives = 206/387 (53%), Gaps = 26/387 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL+P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F  P+L  
Sbjct: 110 FTSLGLAPWLVGSLSAMAIRRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAFAAPILHR 169

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             +    +     ++L PTRELA Q+ + F+      +L   L+ GG     Q   L   
Sbjct: 170 WSEDPFGIF---AVVLTPTRELALQIFEQFKAISAPQSLKPVLITGGSEMRPQAIALSTR 226

Query: 123 ADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSLVP 175
             V+I TPGR+ DH           ++ + ++V DEADR+L  G    +P ++   S +P
Sbjct: 227 PHVVIATPGRLADHIKTSGEDTIFGLSRVRMVVFDEADRLLASGPGSMVPDVETCLSALP 286

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPK--------RIEVNTPSSTAETIEHCFVATY 225
              +RQTLLF+AT+T E++ +    +  PK         I     ++   T++ C++   
Sbjct: 287 PSTSRQTLLFTATLTPEVRALKS--MPRPKDRPPVFITEISTENNATIPPTLKQCYL--Q 342

Query: 226 AQYSKKCALLQQLLQSQDT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
              + + A L  LL +++   K  IIFCN+ K    L   L + G  V ++H  + Q  R
Sbjct: 343 VPMTHREAFLHVLLSTEENGSKPAIIFCNRTKTADLLDRLLRRLGHRVTSLHSLLPQSER 402

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
              L+ F+    +L+VA+D+AARGLDIP V  V NFDVP   ++YIHR+GRT RAGR G+
Sbjct: 403 TSNLARFRASAARLLVATDVAARGLDIPSVSLVVNFDVPRNPDDYIHRVGRTARAGREGE 462

Query: 345 AFTLVAKEDIKHIDAIEKLIEKK-VDW 370
           A TLV + D++ + AIE  + ++ V W
Sbjct: 463 AVTLVGQRDVQLVLAIEARVGRQMVVW 489


>gi|328945053|gb|EGG39209.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK1087]
          Length = 447

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 197/369 (53%), Gaps = 15/369 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L++    V+    +I  P+RELAAQ+   A     + +   + VA  +GG     Q  
Sbjct: 61  QMLDEEADSVQ---AVITAPSRELAAQIYQAARQLASFSEK-EIRVANYVGGTDKARQIG 116

Query: 118 KLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           KLE     ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P 
Sbjct: 117 KLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPK 176

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TIE+  ++T  +  K   + Q
Sbjct: 177 DLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGR-DKNAQIYQ 235

Query: 237 --QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             QLLQ    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K  
Sbjct: 236 ISQLLQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D 
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDD 351

Query: 355 KHIDAIEKL 363
             I  +EK+
Sbjct: 352 SDIRELEKM 360


>gi|82751161|ref|YP_416902.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122]
 gi|82656692|emb|CAI81119.1| probable ATP-dependent RNA helicase [Staphylococcus aureus RF122]
          Length = 448

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 125/381 (32%), Positives = 205/381 (53%), Gaps = 13/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ + IP +L++ ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKKTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++   + ++ P+ +++ PTRELA Q+ D      +    ++V + IGG   E   ++   
Sbjct: 66  ID---SEIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRCNA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L ++    LVIDEAD M+D+G I  +  I + +       
Sbjct: 123 QPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNANIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +LQ     +L +P+ + V++     + IE   + T     K  A +++ L  
Sbjct: 183 VFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPT-----KGAAKVEKTLNL 237

Query: 242 QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            D +     I+FCN + N  +L  SL + G  V  IHG +  R R + +   +   +Q +
Sbjct: 238 IDILNPYLCIVFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEVQYV 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +ASDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  
Sbjct: 298 IASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISL 357

Query: 360 IEK--LIEKKVDWLNGDLSSL 378
           IE    +   VD  +G+L  +
Sbjct: 358 IEDRGFVFNTVDIKDGELKEV 378


>gi|196004420|ref|XP_002112077.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
 gi|190585976|gb|EDV26044.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
          Length = 633

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 139/372 (37%), Positives = 200/372 (53%), Gaps = 19/372 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF    +S  +  ++ + G     PIQ +T   V    DV G A+TGTGKT SF LP+  
Sbjct: 53  DFKKFRISSAIADSLKERGITYLFPIQAQTFDYVYDGQDVIGQARTGTGKTLSFALPITE 112

Query: 62  -ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +++K R+  ++R P+ L+L PTRELA Q+   F+    +  L V  + GG+P+  Q   
Sbjct: 113 KLIKKKRSDDKIRPPKVLVLAPTRELAIQITSEFKALSGS--LKVVCIYGGVPYAEQENH 170

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D++I TPGRI DH +R  L+++ ++ +V+DE DRMLDMGF   ++ I S      
Sbjct: 171 LRNGIDIVIGTPGRIKDHIDRKNLVLSKLKHVVLDEVDRMLDMGFCDIVEEILSHAYVKD 230

Query: 179 ---QTLLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYAQYSKKC 232
              QTLLFSATM     K  + ++++ K+I          T+ T+EH  ++    Y ++ 
Sbjct: 231 RHPQTLLFSATMPKWALKTIDKYMKSDKKIVDLIGKDALRTSTTVEHKVIS--CPYHERA 288

Query: 233 ALLQQLLQ--SQDTMKNGIIFCNQKKNVVNLC-HSLEKQGFSVCAIHGNIDQRSRMKILS 289
           A +  L++    D  +  IIF   KK    L   S+ KQ   V  +HG+I Q  R   L 
Sbjct: 289 ATIGDLVKVYGGDHART-IIFSPTKKEANELALSSVLKQEVQV--LHGDIQQAQREVTLK 345

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+EG    +VA+D+AARGLDIP+V  V   + P  A+ YIHR GRTGRA R G   T  
Sbjct: 346 GFREGNFPCLVATDVAARGLDIPEVDLVIQCEPPKDADTYIHRSGRTGRANRTGICITFY 405

Query: 350 AKEDIKHIDAIE 361
                  I +IE
Sbjct: 406 KPTHQDRIKSIE 417


>gi|320164285|gb|EFW41184.1| ATP-dependent RNA helicase dbp4 [Capsaspora owczarzaki ATCC 30864]
          Length = 963

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 210/387 (54%), Gaps = 20/387 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L LS +   A+ D  YVK T IQ  ++P  L   DV G A+TG+GKT +F+LP++  
Sbjct: 199 FAELPLSSRTQAALRDCAYVKLTEIQRVSLPDGLAGRDVLGAAKTGSGKTLAFLLPVVER 258

Query: 63  LEKGRARVRMPR-----TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     R+R         +++ PTRELA Q+ +   K G  + L   L+IGG   E + +
Sbjct: 259 L----YRLRWSSEDGIGAIVITPTRELAFQIFEVLRKIGARHELAAGLVIGGKDVEQEKE 314

Query: 118 KLERGADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++  G ++L+CTPGR+L H +       +N+++LV+DEADR+LDMGF   +  I   +P 
Sbjct: 315 RIN-GMNILVCTPGRLLQHMDETPNFDCSNLQMLVLDEADRILDMGFARTLDAILDFLPR 373

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCAL 234
           +RQTLLFSAT T  ++ ++   L +P+   V+  +  ST + +   +V T      K  +
Sbjct: 374 SRQTLLFSATQTKSVRDLARLSLTSPEYAAVHEHAKHSTPKGLSQSYVVTA--LPDKLDI 431

Query: 235 LQQLLQSQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           L   +++  + K  +    C Q + V+     L + G  + A++G   Q  RM I S+F 
Sbjct: 432 LYSFIRTHTSSKTLVFLSSCKQVRFVLETFRRL-RPGVPLMALYGKQKQMKRMAIYSDFA 490

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +    ++ A+D+AARGLD P V  V   D P  A  YIHR+GRT RA + G A  +V   
Sbjct: 491 KKPSAVLFATDIAARGLDFPAVHWVIQVDCPEDASTYIHRVGRTARADKSGNALLMVLPS 550

Query: 353 DIKHIDAI--EKLIEKKVDWLNGDLSS 377
           + K + A   EK I  +   +N D SS
Sbjct: 551 EEKGMVATLAEKRIPIEKREINPDRSS 577


>gi|291434996|ref|ZP_06574386.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291337891|gb|EFE64847.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 497

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 122/353 (34%), Positives = 191/353 (54%), Gaps = 13/353 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA L L  +V+  +   G  +P PIQ  T+P  L+  D+ G  +TG+GKT +F LP+L
Sbjct: 54  VSFAGLELPVEVLRTLSGLGVREPFPIQAATLPDALEGRDILGRGRTGSGKTLAFGLPLL 113

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T     RA  + P  LIL PTRELA QVA     Y +   L +A ++GG+    Q  +L 
Sbjct: 114 TRTAGRRAEPKQPLALILVPTRELAQQVAQALAPYAEALRLRMATVVGGMSIGRQVAELR 173

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA+V++ TPGR+ D   R    +  + I V+DEAD+M D+GF+P + ++   V    Q 
Sbjct: 174 QGAEVVVATPGRLHDLIERNACRLGRVRITVLDEADQMCDLGFLPQVVDVLDQVHPDGQR 233

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQQL 238
           +LFSAT+  ++ ++    L +P    V+  + T  T+EH  +  +   +Y+         
Sbjct: 234 MLFSATLDRDVDQLVRRCLHDPVVHSVDPSAGTVTTMEHHVLVVHGPDRYA--------- 284

Query: 239 LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + ++   ++G  ++F + K  V  L   L   G    A+H    Q  R + L+ FK G +
Sbjct: 285 VTTEIAARDGRVLLFLDTKHAVDQLTRHLRASGVHAGALHSGKSQPQRTRTLAQFKNGQL 344

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            ++VA+++AARGL + D+  V N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 345 TVLVATNVAARGLHVDDLDLVVNVDPPTDPKDYVHRAGRTARAGESGSVVTLV 397


>gi|50914756|ref|YP_060728.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
 gi|50903830|gb|AAT87545.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
          Length = 447

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 204/367 (55%), Gaps = 11/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      V  A+ + G+V PT +Q + IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDYHFKQYVQQALEEIGFVNPTEVQQRLIPIVNSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKK 118
             L++ +A V++   +I  P+RELA Q+ D  ++  K+    + +A  +GG     Q +K
Sbjct: 61  EKLDEAKAEVQV---VITAPSRELATQIFDACKQIAKHSQEEIRLANYVGGTDKLRQIEK 117

Query: 119 LERGAD--VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           L +G+   ++I TPGRI D    G L ++     V+DEAD  +DMGF+  +  I + +P 
Sbjct: 118 L-KGSQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASLPK 176

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  V+T  +  K   LL+
Sbjct: 177 SVQILVFSATIPQKLQPFLKKYLTNPVIEQIKTKTVIADTIDNWLVSTKGR-DKNGQLLE 235

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L   Q  M   ++F N K+   +L   L   G  V  IHG I  R R +I++  K+   
Sbjct: 236 ILKTMQPYM--AMLFVNTKERADDLHAFLTANGLKVAKIHGGIPPRERKRIMNQVKKLDF 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   
Sbjct: 294 EYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSD 353

Query: 357 IDAIEKL 363
           I  +EK+
Sbjct: 354 IKELEKM 360


>gi|19746579|ref|NP_607715.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS8232]
 gi|94994869|ref|YP_602967.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
 gi|139473299|ref|YP_001128014.1| ATP-dependent RNA helicase [Streptococcus pyogenes str. Manfredo]
 gi|19748794|gb|AAL98214.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS8232]
 gi|94548377|gb|ABF38423.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
 gi|134271545|emb|CAM29769.1| putative helicase [Streptococcus pyogenes str. Manfredo]
          Length = 447

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 204/367 (55%), Gaps = 11/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      V  A+ + G+V PT +Q + IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDYHFKQYVQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKK 118
             L++ +A V++   +I  P+RELA Q+ D  ++  K+    + +A  +GG     Q +K
Sbjct: 61  EKLDEAKAEVQV---VITAPSRELATQIFDACKQIAKHSQEEIRLANYVGGTDKLRQIEK 117

Query: 119 LERGAD--VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           L +G+   ++I TPGRI D    G L ++     V+DEAD  +DMGF+  +  I + +P 
Sbjct: 118 L-KGSQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASLPK 176

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  V+T  +  K   LL+
Sbjct: 177 SVQILVFSATIPQKLQPFLKKYLTNPVIEQIKTKTVIADTIDNWLVSTKGR-DKNGQLLE 235

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L   Q  M   ++F N K+   +L   L   G  V  IHG I  R R +I++  K+   
Sbjct: 236 ILKTMQPYM--AMLFVNTKERADDLHAFLTANGLKVAKIHGGIPPRERKRIMNQVKKLDF 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   
Sbjct: 294 EYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSD 353

Query: 357 IDAIEKL 363
           I  +EK+
Sbjct: 354 IKELEKM 360


>gi|71031074|ref|XP_765179.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68352135|gb|EAN32896.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 417

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 197/367 (53%), Gaps = 7/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L  HD+   A+ GTGKTA+FV+P+L 
Sbjct: 45  EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALAGHDILARAKNGTGKTAAFVIPLLQ 104

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+   A+++    LIL PTRELA Q +   ++ GK   +   +  GG        +L +
Sbjct: 105 KLDTSEAQIQ---GLILLPTRELALQTSAVVKELGKYLEVQCMVSTGGTSLRNDIMRLYK 161

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L  TPGRILD  N+G  +++    +V+DEAD+ML   F P ++ +   +P  +Q +
Sbjct: 162 PVHILCGTPGRILDLTNKGVAVLSQCSTVVLDEADKMLSQEFCPIVEALLKFLPTEKQII 221

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    +Q   E +L N   I +     T + I   +   Y +  +K   L  L  +
Sbjct: 222 LYSATFPASVQAFKEQYLPNAHEINL-MDDLTLKGITQFY--AYVEERQKVHCLSTLF-A 277

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + GFS   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 278 RLQINQAIIFCNSVVRVELLAKKITELGFSCFYIHAKMMQSHRNRVFHDFRNGACRCLVS 337

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D   V  V NFD P  +  Y+HRIGR+GR G  G A  LV ++D + +  IE
Sbjct: 338 SDLFTRGIDFRFVNVVVNFDFPKNSSTYLHRIGRSGRFGHLGLAINLVTEQDKEALFKIE 397

Query: 362 KLIEKKV 368
           + +  ++
Sbjct: 398 EELATEI 404


>gi|331217930|ref|XP_003321643.1| ATP-dependent RNA helicase HAS1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309300633|gb|EFP77224.1| ATP-dependent RNA helicase HAS1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 646

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 128/356 (35%), Positives = 207/356 (58%), Gaps = 13/356 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ L LSP    A+ D G+ K T +Q +TIP ++   DV G A+TG+GKT +F++P + 
Sbjct: 109 EFSSLDLSPPTAKAIQDMGFTKMTEVQARTIPPLMTGRDVLGAARTGSGKTLAFLIPAVE 168

Query: 62  ILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L + + + R    T+I+ PTRELA Q+    ++  K+++ T A++IGG   +A+ +KL 
Sbjct: 169 MLSRLQFKPRNGTGTIIVSPTRELALQIFGVAQELMKHHSQTFAIVIGGANRKAEAEKLV 228

Query: 121 RGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TR 178
           +G ++LI TPGR+LDH    K  + +N++ LV+DEADR+L++GF   ++ I SL+P   R
Sbjct: 229 KGVNLLISTPGRLLDHLQNTKGFVFSNLKALVVDEADRILEIGFEDEMRQIISLLPSENR 288

Query: 179 QTLLFSATMTDELQKVSENFLQ-NPKRIEVNT--PSSTAETIEHCFVATYAQYSKKCALL 235
           Q++LFSAT T ++Q ++   L+  P  I V+     +T + +E  +V       K+  LL
Sbjct: 289 QSMLFSATQTTKVQDLARISLRPGPLYINVDADKQEATVQGLEQGYVV--CDSDKRFLLL 346

Query: 236 QQLLQSQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
              L+     K  + F  CN  K    L + ++     V  +HG   Q+ R      F  
Sbjct: 347 FTFLKKSLKKKVIVFFSSCNSVKYHAELLNYID---IPVLDLHGKQKQQKRTNTFFEFCN 403

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            T  +++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT RAG+ G++   +
Sbjct: 404 ATTGILLCTDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVGRTARAGKSGRSLLFL 459


>gi|332976898|gb|EGK13720.1| DEAD-box ATP-dependent RNA helicase YdbR [Desmospora sp. 8437]
          Length = 291

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 111/292 (38%), Positives = 178/292 (60%), Gaps = 6/292 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++  + + G+ +P+PIQ + IP VL+  DV G AQTGTGKTA+F +P+L  
Sbjct: 4   FDSFELDALIMKGIREMGFEEPSPIQAECIPAVLRGEDVIGQAQTGTGKTAAFGIPLLEH 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++ G  +V+    ++L PTRELA QV++   K G+   +    + GG P   Q K L++G
Sbjct: 64  VDPGSRKVK---AVVLAPTRELAIQVSEELRKIGRAKRVKTLPIYGGQPIGRQIKALKQG 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH  RG L ++++E+LV+DEAD MLDMGFI  I+ +   +P  RQ LL
Sbjct: 121 VQVVIGTPGRMLDHLRRGTLRLDDVEMLVLDEADEMLDMGFIDDIEAVMDHLPENRQLLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +++++  ++  P+ I V+    TA  IE  +       S K   L ++L S+
Sbjct: 181 FSATIPPAIRQLARKYMNKPRYITVSRGEVTAPVIEQVYYKVLE--STKLDSLCRILDSE 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            +++ GI+FC  KK V  L  SL+ +G+    +HG++ Q+ R +++++F+ G
Sbjct: 239 -SLEQGILFCRTKKGVDELAESLQARGYLAAGLHGDLAQQQRDRVMNSFRAG 289


>gi|71747184|ref|XP_822647.1| ATP-dependent DEAD-box RNA helicase [Trypanosoma brucei TREU927]
 gi|70832315|gb|EAN77819.1| ATP-dependent DEAD-box RNA helicase, putative [Trypanosoma brucei]
 gi|261332418|emb|CBH15413.1| ATP-dependent DEAD-box RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 406

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 123/367 (33%), Positives = 202/367 (55%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + GL  ++   + + G+ +P+P+Q + IP+ LQ  DV   A+ GTGKTASFV+P   +
Sbjct: 33  FEEYGLRRELQMGIFEKGFERPSPVQEEAIPVALQGKDVLARAKNGTGKTASFVIP---V 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           LEK   ++   + L++ PTRELA Q A   ++ GK+   L V +  GG        +L+ 
Sbjct: 90  LEKVDTQLPHIQALLMVPTRELALQTAQVTKELGKHITGLEVMVTTGGTTLRDDILRLQS 149

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL+ TPGR +D  ++G   +++  I+V+DEAD++L   F   ++++   +P  RQ+L
Sbjct: 150 VVHVLVATPGRAVDLASKGTAKLDHCRIIVLDEADKLLSQEFTSLMRDLYGFLPKGRQSL 209

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++  ++ +L+NP  I +    +     ++     + +  +K   L  L  +
Sbjct: 210 LFSATFPVTVKDFADKYLRNPYEINLMEELTLRGVTQY---YAFVEERQKIHCLNTLF-N 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q+ R ++  +F+EG  + +V 
Sbjct: 266 RLQINQSIIFCNSVNRVELLAKKITQLGYSCYYIHARMQQQHRNRVFHDFREGHCRNLVC 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A   V  ED  ++  IE
Sbjct: 326 SDLITRGIDIQAVNVVINFDFPKYAETYLHRIGRSGRFGHLGLAINFVTYEDRHNVYRIE 385

Query: 362 KLIEKKV 368
           + ++ ++
Sbjct: 386 QELDTEI 392


>gi|302414618|ref|XP_003005141.1| ATP-dependent RNA helicase eIF4A [Verticillium albo-atrum VaMs.102]
 gi|261356210|gb|EEY18638.1| ATP-dependent RNA helicase eIF4A [Verticillium albo-atrum VaMs.102]
          Length = 397

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 134/376 (35%), Positives = 214/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L  +++  V   G+ +P+ IQ + I  V++ +DV   AQ+GTGKTA+F    +++
Sbjct: 26  FDDMELKSELLRGVYAYGFERPSAIQARAIMPVVKGNDVIAQAQSGTGKTATF---SISV 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    V+  + LIL PTRELA Q+       G   N+     IGG       K L+ G
Sbjct: 83  LQKIDPAVKQCQALILAPTRELAQQIQKVVIAIGDFMNIECHACIGGTSVRDDMKALQDG 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 143 PQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 203 LSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 261

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A+
Sbjct: 262 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIAT 320

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  ED++ +  IE+
Sbjct: 321 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTAEDVRMMREIEQ 380

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 381 FYSTQIEEMPMNVADL 396


>gi|124506009|ref|XP_001351602.1| ATP-dependent helicase, putative [Plasmodium falciparum 3D7]
 gi|23504529|emb|CAD51409.1| ATP-dependent helicase, putative [Plasmodium falciparum 3D7]
 gi|156072126|gb|ABU45414.1| DEAD-box helicase 5 [Plasmodium falciparum]
          Length = 755

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 131/407 (32%), Positives = 204/407 (50%), Gaps = 47/407 (11%)

Query: 3   FADLGLSPKVVCAVLD--AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           F+DL    K +   L+   G    T IQ ++   + +  D+ G ++TG+GKT +F LP++
Sbjct: 143 FSDLSEINKNIVEFLENKKGIKYMTKIQSQSFKPIYEGKDIIGRSETGSGKTLAFALPLV 202

Query: 61  TILEK-------------------------------------------GRARVRMPRTLI 77
             L K                                            R   + P  L+
Sbjct: 203 EKLYKMKTSNEKFEEENGSHEEDQKKNIYDDVDNDNNYDNFSYGKKYQNREHNKDPSILV 262

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           LEPTREL+ QV + F++  + YN  +  + GG  +  Q  KL +G D+L  TPGRI+DH 
Sbjct: 263 LEPTRELSKQVENTFKEISQFYNFNIMSIYGGESYTYQENKLRKGIDILTGTPGRIIDHI 322

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR-QTLLFSATMTDELQKVSE 196
            +  L + NI+ +V+DEAD ML++GF   I+ I S +     Q LL+SAT    ++ +S 
Sbjct: 323 EKKNLSLQNIKYVVLDEADEMLNLGFTHDIERILSNINLKEAQVLLYSATTPSWIKDISS 382

Query: 197 NFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
            +L+NP  I+V ++ + TA+ I+H  + T     +K  LL+ ++  +      IIF   K
Sbjct: 383 KYLKNPFCIDVVDSSNKTAKNIKHIAIKTPYDIKEKALLLEDIILVKSNGGQVIIFTRTK 442

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
                LC     +  S   +HGNI Q +R   +  F++G  Q+++A+D+A+RGLDI +V 
Sbjct: 443 LEADILCSEGSFKSLSFAVLHGNIAQSTREYTMQRFRQGMFQILIATDIASRGLDISNVD 502

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
            V     PN +  YIHR GRTGRA + G +  L + ED + +  IEK
Sbjct: 503 LVIQCFPPNYSAVYIHRAGRTGRANKKGTSLVLYSNEDKQDLIKIEK 549


>gi|118777945|ref|XP_308366.3| AGAP007511-PA [Anopheles gambiae str. PEST]
 gi|116132145|gb|EAA04660.3| AGAP007511-PA [Anopheles gambiae str. PEST]
          Length = 816

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 122/382 (31%), Positives = 203/382 (53%), Gaps = 6/382 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V+  +L  GY  PTPIQ KTIP++L   DV  +A+TG+GKT  F++PM   
Sbjct: 40  FQAMGLSAPVLKGILKMGYKIPTPIQRKTIPIILDGRDVVAMAKTGSGKTGCFLIPMFER 99

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L++  A+     R LIL PTRELA Q     ++ G+  +L   L++GG   ++Q   +  
Sbjct: 100 LKQREAKAGGGARALILSPTRELAIQTYKFIKQLGRFMDLKAILVLGGDSMDSQFAAVHT 159

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DV++ TPGR L       L +N+++  V DEADR+ +MGF   +      +P +RQ +
Sbjct: 160 LPDVIVATPGRFLHLCVEMDLKLNSVQYCVFDEADRLFEMGFGEQLTETIKRLPESRQMV 219

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQLL 239
           LFSAT+   +   +   L  P  I ++  S   +T++  + +     +Y+    LL++++
Sbjct: 220 LFSATLPKLMVDFATAGLCQPVLIRLDVESKIPDTLDLKYIYCRPAERYATLLVLLREVI 279

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S       +IF   + +V  +   L K G     ++  +D  +R    + F    + ++
Sbjct: 280 PS---TAQTVIFAGTQHHVELISLMLTKAGVPNSHVYSGLDASARKINTAKFTHRKVNVL 336

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+AARGLDIP +  V N   P + + +IHR+GR  RAGR G A+T+ + +D+ H+  
Sbjct: 337 VVTDIAARGLDIPTLDFVINLHFPGKPKLFIHRVGRCARAGRSGMAYTIFSNDDVAHLID 396

Query: 360 IEKLIEKKVDWLNGDLSSLNPP 381
           +   + + +D  +     + PP
Sbjct: 397 LHMFLNRPLDVADRKTMGIVPP 418


>gi|156554090|ref|XP_001600475.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 782

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 128/363 (35%), Positives = 207/363 (57%), Gaps = 14/363 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL LS + +  + D+ Y+  T IQ ++I L L+ +D+ G A+TG+GKT +F++P++ I
Sbjct: 43  FTDLPLSMQTLKGLKDSEYIDLTDIQRQSIGLALKGNDILGAAKTGSGKTLAFLIPVMEI 102

Query: 63  LE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  K   R+     LI+ PTRELA Q+ +   K G+ ++++  L+IGG     + K+L++
Sbjct: 103 LYCKQWTRLDGLGALIITPTRELAYQIYETLRKVGRYHDISAGLIIGGKDLHFEKKRLDQ 162

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             +++ICTPGR+L H +   L    N++ILV+DEADR LDMGF   + +I   +P  RQT
Sbjct: 163 -CNIIICTPGRLLQHMDENPLFDCVNMKILVLDEADRCLDMGFEKTMNSIIENLPLERQT 221

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT T  ++ ++   L++P  I V  N   +T E ++  ++    +  +K A+L   
Sbjct: 222 LLFSATQTKTVKDLARLSLKDPLYISVHENAAHTTPEGLQQSYIV--CELEEKLAMLWSF 279

Query: 239 LQSQDTMKNGIIF--CNQKKNVVN-LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +++    K  + F  C Q K +    C    + G S+ +++G + Q  RM I  +F +  
Sbjct: 280 IRNHLKQKIIVFFSSCKQVKYIFEAFCRM--RPGVSLLSLYGTLHQLKRMSIYESFCKKQ 337

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKED 353
             ++ A+D+AARGLD P V  V   D P     YIHR GRT R    G++  ++  ++E 
Sbjct: 338 HAVLFATDIAARGLDFPAVNWVVQMDCPEDVNAYIHRAGRTARFQSGGESLLVLLPSEEK 397

Query: 354 IKH 356
           I H
Sbjct: 398 IVH 400


>gi|328849281|gb|EGF98464.1| hypothetical protein MELLADRAFT_51000 [Melampsora larici-populina
           98AG31]
          Length = 503

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 145/412 (35%), Positives = 214/412 (51%), Gaps = 30/412 (7%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTLILE 79
           + KP+PIQ    P+++ + DV GIA+TG+GKT +F +P    IL     +V+    L++ 
Sbjct: 97  FEKPSPIQSAVWPVLIAKRDVVGIAETGSGKTLAFGIPAFEHILST--PKVKTISVLVIA 154

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKL--ERGADVLICTPGRILD 135
           PTRELA Q      + GK  +  +  L   GG+   AQ K L  E G   +  TPGR+LD
Sbjct: 155 PTRELAMQTESTLSELGKLTSPPIKTLCVYGGVDKNAQRKALQAENGVRAVAGTPGRLLD 214

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV--------PFTRQTLLFSATM 187
             N G L ++N+  LV+DEADRMLD GF   I+ I +L           TR T +FSAT 
Sbjct: 215 LANEGHLKLDNVSWLVLDEADRMLDKGFENDIRAIINLCLPSKSTTGSSTRLTAMFSATW 274

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAE-TIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
              +++++ +F+++P RI V     +A  ++E           K+  L + L   +   K
Sbjct: 275 PLSVRRLASDFMKDPVRILVGDDQLSASCSVEQSVEVLPDTRGKEFKLFETL---KTLEK 331

Query: 247 NG---------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +G         I+F   KK    L   L ++GF  C I G++ Q  R + L +FK G   
Sbjct: 332 SGGFNLKKDKVIVFALYKKEAQRLHAFLLRKGFGACCIEGDMSQDKRSQSLEDFKSGRAT 391

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIP V  V N   P   E+YIHRIGRTGRAGR GK+ T    ED  H 
Sbjct: 392 ILVATDVAARGLDIPKVEVVINVTFPLTIEDYIHRIGRTGRAGRTGKSITFFTDEDKVHA 451

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH-NHARKNNP-IPQKSTGFD 407
             + ++++     +  DL      ++K   A + +H +  +P +  K   FD
Sbjct: 452 GELMRVLKDANQVVPEDLKKFGGQIKKKTHAAYGDHWKDIDPTVKAKKIKFD 503


>gi|308504808|ref|XP_003114587.1| hypothetical protein CRE_28204 [Caenorhabditis remanei]
 gi|308258769|gb|EFP02722.1| hypothetical protein CRE_28204 [Caenorhabditis remanei]
          Length = 631

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 131/346 (37%), Positives = 189/346 (54%), Gaps = 15/346 (4%)

Query: 18  DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI-----LEKGRARVRM 72
           + G V PT IQI+ IP+ L   D+ GIA TG+GKT +FVLP++       L+    R   
Sbjct: 208 EKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVMFCLEQELKLPFMRNEG 267

Query: 73  PRTLILEPTRELAAQVAD----NFEKYGKNY--NLTVALLIGGIPFEAQNKKLERGADVL 126
           P  LI+ P+RELA Q+ D     F+   K     +   L IGG+P   Q K    G  ++
Sbjct: 268 PFGLIIVPSRELARQIYDLVIEMFDAINKAGLPEMRAGLCIGGVPIGEQAKDFRNGIHIV 327

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+ D   +  + +     LV+DEADRMLDMGF   I++I       RQTLLFSAT
Sbjct: 328 VATPGRLSDMLTKKIINLEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQRQTLLFSAT 387

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
           M  ++Q  +++ L  P  I VN   + A ++       + +   K   + + LQ   T  
Sbjct: 388 MPKKIQFFAKSALVQP--IVVNVGRAGAASLNVLQELEFVRSENKLVRVLECLQK--TSP 443

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             +IF  +K +V N+   L  +G  V +IHG  DQ  R   +  F++    ++VA+D+A+
Sbjct: 444 KVLIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVLVATDVAS 503

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +GLD   + HV NFD+P   ENY+HRIGRTGR+GR G A T + K+
Sbjct: 504 KGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFINKK 549


>gi|307214659|gb|EFN89598.1| Probable ATP-dependent RNA helicase DDX47 [Harpegnathos saltator]
          Length = 377

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 111/297 (37%), Positives = 179/297 (60%), Gaps = 5/297 (1%)

Query: 76  LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           L+L PTRELA Q+++ FE  G +  +  A+L+GG+   AQ   L +   ++I TPGR++D
Sbjct: 15  LVLTPTRELAFQISEQFEALGSSIGVKCAVLVGGMDMSAQALLLSKKPHIIITTPGRLVD 74

Query: 136 HFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           +    K   + N++ LV+ EADR+L+M F   +  I  ++P  R+TLLFSATMT ++QK+
Sbjct: 75  YLENTKGFSLQNLKFLVMGEADRILNMDFEIEVDKILRVIPRERRTLLFSATMTKKVQKL 134

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
               L+NP ++EV+T   T E ++  ++    ++  K   L  +L ++    + +IFC  
Sbjct: 135 QRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKF--KDVYLVHIL-NELAGNSFMIFCAT 191

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
             N V     L   GF+   +HG + Q  R+  L+ FK     +++++D+A+RGLDIP V
Sbjct: 192 CNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKARNRSILISTDVASRGLDIPHV 251

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD-W 370
             V NFD+P  +++YIHR+GRT RAGR G++ T V + D++    IE+LI K++  W
Sbjct: 252 DIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLISKQLPLW 308


>gi|156064101|ref|XP_001597972.1| hypothetical protein SS1G_00058 [Sclerotinia sclerotiorum 1980]
 gi|160380631|sp|A7E436|DBP8_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp8
 gi|154690920|gb|EDN90658.1| hypothetical protein SS1G_00058 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 540

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 139/388 (35%), Positives = 207/388 (53%), Gaps = 28/388 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L + P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F +P   I
Sbjct: 113 FAALDVKPWLVASLGAMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVP---I 169

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K          L+L PTRELA Q+ + F+      +L   L+ GG     Q   L + 
Sbjct: 170 LQKWAEDPFGIFALVLTPTRELALQIYEQFKAISSPQSLKAVLITGGSDMRPQATALAQR 229

Query: 123 ADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG----FIPYIQNITSLV 174
             V+I TPGR+ DH           +  + ++V+DEADR+L  G     +P ++   SL+
Sbjct: 230 PHVVIATPGRLADHIRTSGEDTVCALRRVRMVVLDEADRLLASGSVGSMLPDVEECLSLL 289

Query: 175 P--FTRQTLLFSATMTDELQKVSE--NFLQNPKRI--EVNT-----PSSTAETIEHCFVA 223
           P    RQTLLF+AT+T E++ + +    L  P     EV+T     PSS  +      V 
Sbjct: 290 PPPSERQTLLFTATVTPEVRALKDMPRTLGKPPVFVCEVDTQALAIPSSLNQMHLQVPVT 349

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
               Y     L   LL  ++  K+ +IFCN+      L H L      V A+H  + QR 
Sbjct: 350 HREHY-----LHMFLLTEKNLPKSIVIFCNRTATADYLTHLLRLLEHRVTALHSKLPQRQ 404

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R+  L  F+    +++VA+D+AARGLDIP+VG V N+DVP   ++YIHR+GRT RAGR G
Sbjct: 405 RIDNLGRFRASAARILVATDVAARGLDIPEVGLVINYDVPRDPDDYIHRVGRTARAGRKG 464

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVD-W 370
           +A T V + D++ I AIEK + ++++ W
Sbjct: 465 EAVTFVGQRDVQLILAIEKRVGRQMEAW 492


>gi|146092266|ref|XP_001470248.1| mitochondrial DEAD box protein [Leishmania infantum]
 gi|134085042|emb|CAM69443.1| putative mitochondrial DEAD box protein [Leishmania infantum JPCM5]
 gi|322500550|emb|CBZ35627.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 544

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 127/345 (36%), Positives = 184/345 (53%), Gaps = 15/345 (4%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           Y   T IQ  TIPL+   HDV G+A TG+GKT +F +P L   +        P  L+L P
Sbjct: 113 YPSTTDIQKFTIPLLADGHDVIGLAPTGSGKTVAFAVPALAGFKPNPDGT--PSVLVLAP 170

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TREL  Q    F+  G    + V    GG P + Q ++L  G D L+  PGR+ D  + G
Sbjct: 171 TRELVQQTTKVFQNLGCG-QVRVCEAYGGAPRDLQARRLRNGCDALVACPGRLKDFLDGG 229

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--QTLLFSATMTDELQKVSENF 198
            + + N+  LV DEADR+LDMGF  ++  I + +      QT+++SAT  + +Q+++  +
Sbjct: 230 DVSIRNLSFLVFDEADRLLDMGFQVHLDEIMAYLGSASHPQTMMWSATWPESVQEMARKY 289

Query: 199 LQNPK-RIEVNTPSSTAETIEHC-----FVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           L + +  I   T  +  +  EH      F  T+ +  +K   L +     D     IIF 
Sbjct: 290 LSDDRVLIRAGTAGAGLQVNEHIKQELIFCRTFTERIEKLGSLVEDGTIDDNKDKLIIFV 349

Query: 253 NQKKNVVN----LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
            ++ +  N      H L      V  IHG + QR R +++S FK   I+L+VA+D+A+RG
Sbjct: 350 ERQADTENTARAFSHRLGIDTRYVGTIHGGLSQRQRDRVMSMFKNNHIRLLVATDVASRG 409

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           LDIPDV  V NF  P   ++Y HRIGRTGRAGR G A+T + +ED
Sbjct: 410 LDIPDVTCVVNFQAPKTIDSYCHRIGRTGRAGRTGTAYTFLGEED 454


>gi|118092587|ref|XP_001232052.1| PREDICTED: similar to Gu protein [Gallus gallus]
          Length = 713

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 134/375 (35%), Positives = 209/375 (55%), Gaps = 25/375 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S   +  +   G     P+Q+KT   V    DV   A+TGTGKT SF +P++  
Sbjct: 135 FSNFPISKGTIQLLQARGVTYLFPVQVKTFNPVYSGKDVIAQARTGTGKTFSFAIPLIEK 194

Query: 63  LE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+   + R R R P+ L+L PTRELA QVA +F+   +   LTVA   GG P+  Q   +
Sbjct: 195 LQADSQERRRGRSPKVLVLAPTRELANQVAKDFKDITRK--LTVACFYGGTPYNGQIDLI 252

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   GKL +  ++ +V+DE D+MLDMGF   +++I   V + + 
Sbjct: 253 RSGIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILR-VAYKKD 311

Query: 179 -----QTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTAETIEHCFVATYAQYS 229
                QTLLFSAT  + +  V++ ++++ K  +V+         A T+EH  +A    +S
Sbjct: 312 SEDNPQTLLFSATCPNWVYDVAKKYMKS-KYEQVDLIGRKTQKAATTVEH--LAIECHWS 368

Query: 230 KKCALLQQLLQ-SQDTMKNGIIFCNQKK--NVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           ++ A++  ++Q    +    I+FC  KK  N + L  S+++   S   +HG+I Q+ R  
Sbjct: 369 QRAAVIGDVIQVYSGSYGRTIVFCETKKDANELALNASIKQDCQS---LHGDIPQKQREI 425

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G  +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G   
Sbjct: 426 TLKGFRNGAFKVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICI 485

Query: 347 TLVAKEDIKHIDAIE 361
               +++   +  +E
Sbjct: 486 CFYQRKEENQLRYVE 500


>gi|321399692|emb|CAJ06994.2| putative ATP-dependent DEAD/H RNA helicase [Leishmania major strain
           Friedlin]
          Length = 592

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 133/364 (36%), Positives = 205/364 (56%), Gaps = 20/364 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           ++F+DL     +  A +DAG+ KPTPIQ  + P++L   D+ G+A+TG+GKT +F++P  
Sbjct: 145 LEFSDLVAPDAIHQAFMDAGFQKPTPIQSVSWPVLLNSRDIVGVAKTGSGKTMAFMIPAA 204

Query: 60  LTI-----LEKGRARVRMPRTLILEPTRELAAQVADNFEK-YGKNYNLTVALLIGGIPFE 113
           L I     L+ G      P  L+L PTRELA Q+     K   +  ++    + GG P  
Sbjct: 205 LHIMAQPPLQPGDG----PIALVLAPTRELAVQIETETRKALTRVPSIMTTCVYGGTPKG 260

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L  G  V I TPGR++D        +  +  L +DEADRMLDMGF   I+ I S 
Sbjct: 261 PQQRALRAGVHVCIATPGRLIDLLETNCTNLLRVTYLTLDEADRMLDMGFEDQIRKICSQ 320

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVAT-YAQYSK 230
           +   RQTL+FSAT   E++ ++ +F ++  R+ + +    + A+  +H FV   Y +  K
Sbjct: 321 IRTDRQTLMFSATWPREIRNLAASFQKDFVRVHIGSEELVANADVHQHVFVVEGYHKEEK 380

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ-GFSVCAIHGNIDQRSRMKILS 289
              +L+Q+       +  ++F   KK+   L   L +    +V AIHG+  Q SR  +L 
Sbjct: 381 MEEILRQV-----GPQRVLVFVKTKKSCDILQDRLGRALRQTVLAIHGDKLQSSRDYVLD 435

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F++    ++VA+D+AARGLDI D+  V N+D+P   E+Y+HRIGRTGRAG+ G A++ V
Sbjct: 436 RFRKDERAILVATDVAARGLDIKDLDVVVNYDMPLNIEDYVHRIGRTGRAGKTGDAYSFV 495

Query: 350 AKED 353
           +  D
Sbjct: 496 SSAD 499


>gi|255071997|ref|XP_002499673.1| hypothetical protein MICPUN_106753 [Micromonas sp. RCC299]
 gi|226514935|gb|ACO60931.1| hypothetical protein MICPUN_106753 [Micromonas sp. RCC299]
          Length = 413

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 199/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDSMNLHENLLRGIYAYGFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCAGVLQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  +   +    L+L PTRELA Q+       G   N+     +GG       + L+ G
Sbjct: 102 LDYEKEECQ---ALVLAPTRELAQQIEKVMRALGDYLNVKCHACVGGTSVREDQRILQSG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I+I  +DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVYDMLRRRALKPDYIKIFSLDEADEMLSRGFKDQIYDIFQLLPSKLQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMTKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  + F+V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFANTRRKVDWLTDKMRARDFTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V K+D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERLLQD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +++  +  ++ L  +++ L
Sbjct: 394 VQRFYQTVIEELPSNVADL 412


>gi|108799132|ref|YP_639329.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
 gi|119868247|ref|YP_938199.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           KMS]
 gi|126434738|ref|YP_001070429.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           JLS]
 gi|108769551|gb|ABG08273.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
 gi|119694336|gb|ABL91409.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. KMS]
 gi|126234538|gb|ABN97938.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. JLS]
          Length = 444

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 123/358 (34%), Positives = 190/358 (53%), Gaps = 4/358 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   +   + + G   P PIQ  T+P  L   DV G  +TG+GKT +F LP+++ 
Sbjct: 7   FADLGVRGPLRRVLENRGIDSPFPIQAATLPDSLAGRDVLGRGKTGSGKTLAFSLPLVSR 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   + R   P  L+L PTRELA Q+    E     Y+L VA + GG+    Q   L  G
Sbjct: 67  LADAKRRSSRPSGLVLAPTRELATQITAVLEPLAAAYDLKVATIFGGVSQNPQASALRAG 126

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++  PGR+ D   +  + ++++EI V+DEAD M D+GF+P +  I +  P   Q LL
Sbjct: 127 VDIVVACPGRLEDLMRQRIISLDSVEITVLDEADHMADLGFLPGVTRILAATPAGGQRLL 186

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ + + K+   FL+ P    V+  ++    + H        + KK AL+  L  + 
Sbjct: 187 FSATLDNGVDKLVRRFLREPVTHSVDEVNAPPPAMTHHVFHVAGAHEKK-ALVHTL--AA 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T +  I+F   K     L   L + G     +HGN+ Q +R + L+ F  G  +++VA+
Sbjct: 244 GTGRR-ILFMRTKHQARKLARQLTESGVPSVDLHGNLSQNARERNLAAFSAGDAKVLVAT 302

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           D+AARG+ + +V  V + D P   + Y+HR GRT RAG  G   T+V  E+ +   A+
Sbjct: 303 DIAARGVHVDEVELVVHVDPPVEHKAYLHRSGRTARAGSAGDVVTVVLPEERRDTAAL 360


>gi|2367402|gb|AAB69639.1| mitochondrial DEAD box protein [Trypanosoma brucei]
          Length = 546

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 130/365 (35%), Positives = 201/365 (55%), Gaps = 18/365 (4%)

Query: 3   FADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+DL   P  +   L  +G+   TPIQ  TIP++ + HD+ G+A TG+GKT +F +P L 
Sbjct: 119 FSDLDNLPDWLSKGLQSSGFSCTTPIQSYTIPVLDEGHDMIGLAPTGSGKTVAFAVPALK 178

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             +   +    PR ++L PTREL  Q A  F +      + V    GG P EAQ ++L  
Sbjct: 179 KFQW--SPNGSPRIVVLAPTRELVQQTAKVFHQLSSG-KVRVCERYGGAPREAQARRLHN 235

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--Q 179
           G DVL+  PGR+ D    G ++ + +  LV DEADR+LDMGF   + +I       R  Q
Sbjct: 236 GCDVLVACPGRLKDFLQNGDVIFDEVSFLVFDEADRLLDMGFKVQLDDILGYFSSHRPAQ 295

Query: 180 TLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIE----HCFVATYAQYSKK--C 232
           T+++SAT    ++++++ +L QN   I   T  +  +  E    H F A   +   K   
Sbjct: 296 TMMWSATWPPVVEQLAQEYLSQNRYVIRSGTAGTGLQVNENIKQHIFFADAPEERVKTLV 355

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK----QGFSVCAIHGNIDQRSRMKIL 288
           +L+++    ++T K  +IF  ++ +  N  ++L +        +  +HG + QR R  I+
Sbjct: 356 SLIKEGKIDENTAKM-MIFVERQTDTENAAYALARMLGIHSRCIGVVHGGMQQRQRDHIM 414

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             FKEG I+++VA+D+A+RGLD PDV  V N   P   ++Y HRIGRTGRAGR G++FT 
Sbjct: 415 GIFKEGRIRILVATDVASRGLDFPDVTCVVNLIAPKNIDSYCHRIGRTGRAGRTGESFTF 474

Query: 349 VAKED 353
           + + D
Sbjct: 475 IGRSD 479


>gi|297160335|gb|ADI10047.1| ATP-dependent RNA helicase [Streptomyces bingchenggensis BCW-1]
          Length = 478

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 123/349 (35%), Positives = 182/349 (52%), Gaps = 9/349 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L   +   +   G   P PIQ   +P  L   DV G  +TG+GKT +F L +L  
Sbjct: 54  FTELDLPEGLTAELARQGVTVPFPIQAAALPNALAGRDVLGRGRTGSGKTLAFGLALLAR 113

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y +   L +A ++GG+    Q   L  G
Sbjct: 114 TAGQRAEPRRPLALVLVPTRELAQQVTDALIPYARPLRLRLATVVGGMSIGRQAGALRDG 173

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D   RG   ++ + + V+DEAD+M DMGF+P +  +   VP   Q +L
Sbjct: 174 AEVVVATPGRLHDLIERGDCRLDQVRVTVLDEADQMADMGFLPQVTRLLRQVPADGQRML 233

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++   FL +P    V+  +    T+EH  V   A   K+  +      ++
Sbjct: 234 FSATLDHAVGQLVRRFLDDPAVHSVDASAGAVTTMEH-HVLHIADTDKRTVV------TR 286

Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++G  I+F + K+ V  L   L   G    A+HG   Q  R + L  FK G + ++V
Sbjct: 287 VAARDGRVIMFLDTKRAVDRLTKHLLASGVRAAALHGGKSQPQRTRTLDYFKTGHVSVLV 346

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           A+++AARG+ + D+  V N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 347 ATNVAARGIHVDDLDLVVNVDPPADHKDYLHRGGRTARAGGSGTVVTLV 395


>gi|182437304|ref|YP_001825023.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178465820|dbj|BAG20340.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 521

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 121/347 (34%), Positives = 184/347 (53%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L +   +  A++  G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 80  FGELEMPAPLKAALVAEGMTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 139

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  + P  L+L PTRELA QV D    Y ++  L +A ++GG+    Q   L  G
Sbjct: 140 TAGRRADAKRPLALVLVPTRELAQQVTDALTPYARSLKLRIATVVGGMSIGRQAGALRGG 199

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D   RG   ++ + I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 200 AEVVVATPGRLKDLIERGDCRLDRVTITVLDEADQMADMGFMPQVTELLDQVNPDGQRML 259

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L++P    V+  +    T+EH  +  Y Q + K A   ++    
Sbjct: 260 FSATLDRNVDLLVRTYLKDPVVHSVDPAAGAVTTMEHHVL--YVQGADKYATTTEIAARD 317

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F + K  V  L   L   G    A+HG   Q  R + L  FK G + ++VA+
Sbjct: 318 GRV---IMFLDTKHAVDKLTDHLLHSGVRAAALHGGKSQPQRTRTLERFKTGHVTVLVAT 374

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARG+ + ++  V N D P+  ++Y+HR GRT RAG  G   TLV
Sbjct: 375 NVAARGIHVDNLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTLV 421


>gi|242050992|ref|XP_002463240.1| hypothetical protein SORBIDRAFT_02g040380 [Sorghum bicolor]
 gi|241926617|gb|EER99761.1| hypothetical protein SORBIDRAFT_02g040380 [Sorghum bicolor]
          Length = 502

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 139/379 (36%), Positives = 206/379 (54%), Gaps = 21/379 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  +V A    G  +PT +Q + IP  L   DV GIA+TG+GKTA+F LP+L  
Sbjct: 78  FADLGLSQWLVDACDALGMRRPTAVQRRCIPRALAGEDVLGIAETGSGKTAAFALPILHR 137

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    V     L L PTRELAAQ+A+ F   G    L     IGG    AQ K L R 
Sbjct: 138 LGEDPYGVA---ALALAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDSLAQAKGLSRR 194

Query: 123 ADVLICTPGRIL----DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             V++ TPGRI     D  +  K+     + LV+DEADR+LD+ F   ++ I   +P  R
Sbjct: 195 PHVVVATPGRIATLVKDDPDLAKVFART-KFLVLDEADRVLDVNFEEELRVIFGCLPKKR 253

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT LFSATM+D L+ + E         E      T ET++  ++    Q  K+  L   L
Sbjct: 254 QTFLFSATMSDNLRSLLELSGNKSYFFEAYEGFKTVETLKQQYIHVPPQ-GKELHLWYLL 312

Query: 239 L----QSQDTMKNGIIFCNQKKNVVNLCHSL----EKQGFSVCAIHGNIDQRSRMKILSN 290
                + +D +++ I+F ++     N+C  L    E+ G+   A++ +  Q  R+  L+ 
Sbjct: 313 SIMKEKKEDPIRSAIVFVSK----CNVCQYLDLLLEELGYPAVALNSHKSQAQRLLALNR 368

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G + +++++D+ +RGLDI  V  V N+D+P    +YIHR+GRT RA R G A + V 
Sbjct: 369 FKSGQVPILISTDVGSRGLDIQTVDLVINYDMPMSPRDYIHRVGRTARASRGGLAISFVT 428

Query: 351 KEDIKHIDAIEKLIEKKVD 369
           ++DI  +  IE ++ K+++
Sbjct: 429 QKDICLLHEIEDVVGKQLE 447


>gi|327262891|ref|XP_003216257.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like [Anolis
           carolinensis]
          Length = 1021

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 128/343 (37%), Positives = 193/343 (56%), Gaps = 18/343 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM----- 72
           AGY K TP+Q  +IP+VL   D+   AQTG+GKTA+F++P+L  +L  G           
Sbjct: 232 AGYFKLTPVQKHSIPIVLAGRDLMACAQTGSGKTAAFLIPILAHMLRDGITATHFKEQQE 291

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
           P  +I+ PTREL  Q+     K+     +   ++ GGI       ++ +G ++L  TPGR
Sbjct: 292 PECIIVAPTRELINQIFLESRKFSYGTCVRPVVIYGGIQMGHTIHQIMQGCNILCATPGR 351

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSATMT 188
           +LD  NRGK+ +  ++ LV+DEADRMLDMGF P ++ + S         RQTL+FSAT  
Sbjct: 352 LLDIINRGKIGLTKLKYLVLDEADRMLDMGFGPDMKKLISSPGMPSKDQRQTLMFSATFP 411

Query: 189 DELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL--LQSQDTM 245
           +E+Q+++  FL+ +   + V         +E   +    QY K+  LL+ L  +  + TM
Sbjct: 412 EEIQRLAGEFLKVDYLFVVVGQVGGACSDVEQTILQV-NQYDKREKLLEILNAIGKERTM 470

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
               +F   KK    +   L ++     +IHG+ +QR R + L  F+ G   ++VA+ +A
Sbjct: 471 ----VFVETKKKADFIATFLCQEYIPTTSIHGDREQREREEALQCFRSGKCPVLVATSVA 526

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           ARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  GKA + 
Sbjct: 527 ARGLDIENVQHVINFDLPSAIDEYVHRIGRTGRCGNTGKAISF 569


>gi|282916828|ref|ZP_06324586.1| helicase [Staphylococcus aureus subsp. aureus D139]
 gi|283770634|ref|ZP_06343526.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus H19]
 gi|282319315|gb|EFB49667.1| helicase [Staphylococcus aureus subsp. aureus D139]
 gi|283460781|gb|EFC07871.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus H19]
          Length = 448

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 126/381 (33%), Positives = 203/381 (53%), Gaps = 13/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ + IP +L+R ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
            +   + ++ P+ +++ PTRELA Q+ D      +    ++V + IGG   E   ++   
Sbjct: 66  FD---SEIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRCNA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L ++    LVIDEAD M+D+G I  +  I + +       
Sbjct: 123 QPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNANIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +LQ     +L +P+ + V++     + IE   + T     K  A +++ L  
Sbjct: 183 VFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPT-----KGAAKVEKTLNL 237

Query: 242 QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            D +     I+FCN + N  +L  SL + G  V  IHG +  R R + +   +    Q +
Sbjct: 238 IDILNPYLCIVFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYV 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +ASDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  
Sbjct: 298 IASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISL 357

Query: 360 IEK--LIEKKVDWLNGDLSSL 378
           IE    +   VD  +G+L  +
Sbjct: 358 IEDRGFVFNTVDIKDGELKEV 378


>gi|227325834|ref|ZP_03829858.1| ATP-dependent RNA helicase RhlB [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 382

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 132/369 (35%), Positives = 201/369 (54%), Gaps = 22/369 (5%)

Query: 46  QTGTGKTASFVLPMLTIL----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL 101
           +TGTGKT +F+      L         +   PR LI+ PTRELA Q+  + E       L
Sbjct: 7   KTGTGKTLAFLASTFHYLLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHATGL 66

Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
            + L  GG  ++ Q K LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+
Sbjct: 67  KLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDL 126

Query: 162 GFIPYIQNITSLVPFTRQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-E 218
           GFI  I+ +   +P T Q L  LFSAT++  +++++   + N + +EV     T   I E
Sbjct: 127 GFIKDIRWLFRRMPPTAQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKE 186

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
             F   Y    +K  LLQ LL+ ++     IIF N K    ++   L   G  V  + G+
Sbjct: 187 ELF---YPSNEEKMRLLQTLLE-EEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGD 242

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
           + Q+ R++IL  F +G + ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGR
Sbjct: 243 VAQKKRLRILEEFTQGNLDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGR 302

Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKLIEKKV-------DWLNGDLSS----LNPPLEKIDI 387
           AG+ G + +L  +E   ++ AIE  I   +       D L  DL +      PP      
Sbjct: 303 AGQSGFSISLACEEYALNLPAIETYIGHGIPVSKYNSDALMNDLPAPKRLTRPPRSNNGP 362

Query: 388 AQHNHARKN 396
            +HN  R++
Sbjct: 363 RRHNAPRRS 371


>gi|195336302|ref|XP_002034780.1| GM14284 [Drosophila sechellia]
 gi|194127873|gb|EDW49916.1| GM14284 [Drosophila sechellia]
          Length = 827

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 115/357 (32%), Positives = 200/357 (56%), Gaps = 6/357 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   GY  PTPIQ KTIPL+L+  DV  +A+TG+GKTA F++P+   
Sbjct: 41  FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++ R   +  R LIL PTRELA Q     ++ G+   L   L++GG   ++Q   +   
Sbjct: 101 LQR-REPTKGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTC 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR L       L +N+IE +V DEADR+ +MGF   +      +P +RQT++
Sbjct: 160 PDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQTVM 219

Query: 183 FSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           FSAT+   L + +   L +P   R++V +    A  ++  +     +Y+    LL+ ++ 
Sbjct: 220 FSATLPKLLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYVIP 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      ++F   + +V  + + L + G S  +++ ++D  +R    + F    + +++
Sbjct: 280 VES---QTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLI 336

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +D+AARG+DIP +  V N   P + + ++HR+GR  RAGR G A+++V+ +D  H+
Sbjct: 337 VTDVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHL 393


>gi|150866736|ref|XP_001386424.2| hypothetical protein PICST_80003 [Scheffersomyces stipitis CBS
           6054]
 gi|158514831|sp|A3LZT3|DBP10_PICST RecName: Full=ATP-dependent RNA helicase DBP10
 gi|149387992|gb|ABN68395.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 931

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 129/417 (30%), Positives = 212/417 (50%), Gaps = 52/417 (12%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GLS  V+  +   GY +PTPIQ KTIPL++   DV G+A+TG+GKTA+F LP++  
Sbjct: 101 FQSFGLSKLVLTNIAKKGYRQPTPIQRKTIPLIMANRDVVGMARTGSGKTAAFTLPVIEK 160

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   ARV + R +IL P+RELA Q     +++ K  +L   +L GG   E Q   +   
Sbjct: 161 LKGHSARVGI-RAIILSPSRELALQTYKQVKEFSKGSDLRAIVLTGGDSLEDQFSSMVSN 219

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L      +L +  +E +V DEAD + + GF   +  + +++P  RQ+LL
Sbjct: 220 PDIVIATPGRFLHLQVEMQLDLKTVEYIVFDEADHLFEQGFAEQLNELLAVLPPQRQSLL 279

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT------------------ 224
           FSAT+   L   ++  L NP  + ++  S  ++ ++  F  T                  
Sbjct: 280 FSATLPRSLVDFAKAGLSNPVLVRLDADSKISDQLQMAFFTTKKNEREANLLYVLQEVIK 339

Query: 225 ----YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK------------NVVNLCHS---- 264
                A+  KK  L+ + +  +   +        K+            NV+   HS    
Sbjct: 340 MPLGTAEQIKKLRLMDKRVNDEAEEEELENESGSKRKYKFKKERLPSANVLPSPHSTIVF 399

Query: 265 -------------LEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
                        L   G+ V  I+G +DQ +R   L  F+ G   ++V +D+AARG+DI
Sbjct: 400 VPTKHHVEYITTLLRDAGYLVSYIYGTLDQHARKNQLYQFRLGMTTVLVVTDVAARGIDI 459

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           P + +V N+ +P  ++ +IHR+GRT RAG  G A+++V ++++ ++  +E  + KK+
Sbjct: 460 PVLANVVNYTLPGSSKIFIHRVGRTARAGNKGWAYSIVNEKELPYLLDLELFLGKKI 516


>gi|325126224|gb|ADY85554.1| RNA helicase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 453

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 126/364 (34%), Positives = 202/364 (55%), Gaps = 9/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  ++   +   G+ KPTP+Q K IP +L+   V   A TG+GKT ++++P+L  
Sbjct: 5   FTDTRLRSEIRQGLAKIGFTKPTPVQEKVIPAMLKGESVIAQAATGSGKTHAYLIPILNA 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKLE 120
           +++     R  + ++  P+RELA Q+     +   N   N+ +A L GG   + Q  + E
Sbjct: 65  IDED---ARYVQAIVTAPSRELADQLYRVARQLRDNSGLNIAIAHLAGGSDRDRQIARFE 121

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    ++I TPGR+LD  ++  LL++ ++  VIDEAD  LD+GF+  +  I + +P    
Sbjct: 122 QNKPQLVIATPGRLLDFADKKILLLDQVKNFVIDEADMTLDLGFLADVDKIAARLPKDVV 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSAT+  +L      ++  P+ I ++ P+  A TI++  +   ++  KK  + + L 
Sbjct: 182 MSAFSATIPVKLTNFLRKYMAKPEEIVIDNPAVIAPTIKNDLLDIGSKDRKKI-VYKLLT 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  +   ++F N K+ V  L   L KQG  V  IHG+I +R R + L   + G  Q +
Sbjct: 241 MGQPYL--ALVFANTKQMVDELADYLTKQGLKVAKIHGSITERERKRTLREVRAGQYQYV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASDLAARG+D+P V  V N+++P   E  IHRIGRTGR G  G A TLV +E++  + A
Sbjct: 299 VASDLAARGIDLPGVSLVINYEIPKDLEFIIHRIGRTGRNGLPGHAVTLVREEEMNRVGA 358

Query: 360 IEKL 363
           +E +
Sbjct: 359 LEYM 362


>gi|225444867|ref|XP_002281219.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297738640|emb|CBI27885.3| unnamed protein product [Vitis vinifera]
          Length = 413

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 198/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G    +    L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 102 LDYGLVECQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V ++D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     ++ L  +++ L
Sbjct: 394 IQRFYNVVIEELPSNVADL 412


>gi|1170511|sp|P41382|IF410_TOBAC RecName: Full=Eukaryotic initiation factor 4A-10; Short=eIF-4A-10;
           AltName: Full=ATP-dependent RNA helicase eIF4A-10
 gi|475213|emb|CAA55642.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
 gi|475216|emb|CAA55641.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
          Length = 413

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 199/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+      +    L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 102 LDYSLVECQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V K+D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     ++ L  +++ L
Sbjct: 394 IQKFYNVVIEELPANVADL 412


>gi|312279014|gb|ADQ63671.1| Peptide chain release factor 2 [Streptococcus thermophilus ND03]
          Length = 447

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 201/366 (54%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ +  + +PTP+Q K IP+V    D+ G ++TG+GKT +F+LP  
Sbjct: 1   MSFKDFNFKDYIQEALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
            I EK     R  + +I  P+RELA Q+  + ++  K+ +  + ++  +GG   + Q +K
Sbjct: 59  -IFEKLNPESRDVQVVITAPSRELATQIYQSTKQIAKHSDTEIRVVNYVGGTDKQRQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+     ++I TPGRI D F  G L ++     V+DEAD  +DMGF+  +  I + +P  
Sbjct: 118 LKVAQPHIVIGTPGRIYDLFKSGDLAIHKAHTFVVDEADMTMDMGFLATVDKIAASLPKE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  V+T  + +K   +L+ 
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEQIKTSTVIADTIDNWLVSTKGR-NKNGQILEI 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   Q  +   +IF N K+   +L   L   G  V  IHG I  R R +I++  K+   +
Sbjct: 237 LKGMQPYL--AMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLEFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 RELEKM 360


>gi|298706995|emb|CBJ29803.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 402

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 125/371 (33%), Positives = 199/371 (53%), Gaps = 11/371 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  +GL  +++  V   G+ +P+ +Q + +  +    DV   +Q+GTGKTA F + +L 
Sbjct: 30  NFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPITSGRDVIAQSQSGTGKTAVFSMGILQ 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+   +  +    L+L PTRELA Q        G   N+     IGG       ++L+ 
Sbjct: 90  MLDTTSSDTQ---ALVLSPTRELAEQTQKVILALGDFMNVQCHACIGGKSIGEDIRRLDY 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   N+++LVIDEAD ML+ GF   I +I   +P + Q +
Sbjct: 147 GVQVVSGTPGRVFDMIRRRNLRTRNLQMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVV 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQL 238
           L SATM  E+  +++ F+  P +I V     T E I+  FVA   +   +   C L   L
Sbjct: 207 LISATMPQEVLDMTKKFMNMPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL 266

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  ++
Sbjct: 267 -----TVTQAVIFCNTKRKVDWLTAKMREVNFTVSSMHGDMPQKERDAIMEEFRSGRSRV 321

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+  RGLD+  V  V  +D+PN  E YIHRIGR+GR GR G A   V  +D++ + 
Sbjct: 322 LIATDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDVRILR 381

Query: 359 AIEKLIEKKVD 369
            IE+    ++D
Sbjct: 382 DIEQYYSTQID 392


>gi|223947385|gb|ACN27776.1| unknown [Zea mays]
          Length = 430

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 128/367 (34%), Positives = 202/367 (55%), Gaps = 27/367 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+  ++V A    G+ +PT IQ + IP  LQ  D+  +AQTG+GKT +F LP+L  
Sbjct: 26  FAELGICAELVEACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTGAFALPILQE 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   R   +     +L PTRELA Q+A+ FE  G    L  ++L+GG+            
Sbjct: 86  LLSNRQAEQSFFACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVD----------- 134

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
                    R+    + GK       I+V+DEAD++L++ F   + +I S +P  R+T L
Sbjct: 135 ---------RVQQVLSIGK----RPHIVVLDEADKLLNVEFEKSLDDILSEMPKDRRTFL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATMT ++ K+    L+NP ++EV++  ST ++++  F    A   K C LL  L +  
Sbjct: 182 FSATMTKKVNKLQRACLRNPAKVEVSSKYSTVDSLKQEFYFVPAD-DKDCYLLHVLNERL 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           ++M   +IF    ++   L   L   G    +I G + Q  R+  L+ FK     +++ +
Sbjct: 241 ESMI--MIFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKAKDCNILICT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI  V  V N+D+P  +++Y+HR+GRT RAGR G A +LV + + +    IE+
Sbjct: 299 DVASRGLDIQGVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVNQYEAQWFVLIEQ 358

Query: 363 LIEKKVD 369
           L+ KK+D
Sbjct: 359 LLGKKID 365


>gi|322493294|emb|CBZ28579.1| putative mitochondrial DEAD box protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 544

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 140/436 (32%), Positives = 217/436 (49%), Gaps = 45/436 (10%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           Y   T IQ  TIPL+   HDV G+A TG+GKT +F +P L   +        P  L+L P
Sbjct: 113 YPSTTDIQKFTIPLLADGHDVIGLAPTGSGKTVAFAVPALAGFKPNPDGT--PSVLVLAP 170

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TREL  Q    F+  G    + V    GG   + Q ++L  G D L+  PGR+ D  + G
Sbjct: 171 TRELVQQTTKVFQNLGCG-QVRVCEAYGGASRDLQARRLRNGCDALVACPGRLKDFLDGG 229

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--QTLLFSATMTDELQKVSENF 198
            + + N+  LV DEADR+LDMGF  ++  I + +      QT+++SAT  + +Q+++  +
Sbjct: 230 DVSIRNLSFLVFDEADRLLDMGFQVHLDEIMAYLDSASHPQTMMWSATWPESVQEMARKY 289

Query: 199 LQNPK-RIEVNTPSSTAETIEHC-----FVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           L + +  I   T  +  +  EH      F  T+ +  +K   L +     D     IIF 
Sbjct: 290 LSDDRVLIRAGTAGAGLQVNEHIKQEVIFCRTFTERIEKLGSLVEDGTIDDDKDKLIIFV 349

Query: 253 NQKKNVVN----LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
            ++ +  N      H L      V  IHG + QR R +++  FK   I+L+VA+D+A+RG
Sbjct: 350 ERQADTENTARAFSHRLGIDARYVGTIHGGLSQRQRDRVMGMFKSNHIRLLVATDVASRG 409

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           LDIPDV  V NF  P   ++Y HRIGRTGRAGR G A+T + +ED         L  + V
Sbjct: 410 LDIPDVTCVVNFQAPKTIDSYCHRIGRTGRAGRTGTAYTFLGEED-------GGLATELV 462

Query: 369 DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK-----------------STGFDRRKK 411
           ++L      +  P E + +A++   R    +PQ+                 ++GFDRR+ 
Sbjct: 463 NYLT--RCRVTVPKELMRLAENYQHR----MPQQRQRFRGVDRGGFSRRENNSGFDRRRS 516

Query: 412 NYSSQKSHIPLKESEK 427
           +  + +  +P + + +
Sbjct: 517 DRGNSREFVPRRPNSR 532


>gi|307135861|gb|ADN33729.1| helicase [Cucumis melo subsp. melo]
          Length = 413

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 198/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G  + +    L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 102 LDYGLVQCQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I + V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V  ED + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     ++ L  +++ L
Sbjct: 394 IQKFYNVIIEELPANVADL 412


>gi|297797185|ref|XP_002866477.1| hypothetical protein ARALYDRAFT_496396 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312312|gb|EFH42736.1| hypothetical protein ARALYDRAFT_496396 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 669

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 134/360 (37%), Positives = 192/360 (53%), Gaps = 19/360 (5%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR-------VRMPRTLIL 78
           PIQ  T  +VL   D+ G A+TG GKT +FVLP+L  L  G A+        R P  L+L
Sbjct: 121 PIQATTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKNKRKMGYARAPSVLVL 180

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QVA +F+ YG +  L+   + GG  + AQ  KL RG D+++ TPGRI DH  
Sbjct: 181 LPTRELAKQVAADFDAYGGSLGLSSCCIYGGDSYTAQENKLRRGVDIVVGTPGRIKDHIE 240

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV--PFTRQTLLFSATMTDELQKVSE 196
           R  + +++++  V+DEAD ML MGF+  ++ I   V  P   QTLLFSAT+   ++ +S 
Sbjct: 241 RQNIDLSHLQFRVLDEADEMLRMGFVEDVELILGKVEDPTKVQTLLFSATLPSWVKNISN 300

Query: 197 NFLQ-NPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
            FL+ + K I++  N     + ++ H  +A     +    L+  ++    +    IIF  
Sbjct: 301 RFLKRDQKTIDLVGNDKMKASNSVRH--IAIPCNKAAMARLIPDIISCYSSGGQTIIFAE 358

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
           +K  V  L   L        A+HG I Q  R   L+ F+ G    +VA+++AARGLDI D
Sbjct: 359 KKNEVSELSGLLAGSR----ALHGEIPQAQREVTLAGFRNGKFSTLVATNVAARGLDIND 414

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
           V  +   + P   E YIHR GRTGRAG  G A TL        +  IEK    K ++++ 
Sbjct: 415 VQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTLYESRK-SSVSRIEKEAGIKFEYISA 473


>gi|288555762|ref|YP_003427697.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288546922|gb|ADC50805.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 454

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 131/391 (33%), Positives = 214/391 (54%), Gaps = 19/391 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    L P ++ A+    +  PT IQ + IP +    DV G +QTGTGKT SF+LP+L 
Sbjct: 5   NFKRFELKPFLIEALSGQRFSLPTEIQERLIPAIKNGKDVIGQSQTGTGKTLSFLLPILD 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY----GKNYNLTVALLIGGIPFEAQNK 117
            ++  +  V+    +I  PTRELA+Q+ D  +K      +   +   LL+GG       +
Sbjct: 65  KIDPAKEEVQ---AIITAPTRELASQLFDELKKLLEHCPEEEMIHAKLLVGGTDRNRAIE 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+    +++ T GRI D  +   LL+    +LV+DEAD+MLDMGFI  +  + S +   
Sbjct: 122 GLKTQPHIVVGTAGRIGDLMDDKALLVYTAAMLVVDEADQMLDMGFIADVDKVASRMAED 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+ ++LQ   + ++ +P+ ++V     TA  IEH  V    +   K     +
Sbjct: 182 LQMMIFSATIPEKLQPFLKKYMNDPRHVQVEPKHVTASKIEHRIVPL--RNRDKLTFTVE 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L +S +     I+F N K+    +  ++++ G +V  +HG +  R R +I+   KE  +Q
Sbjct: 240 LAKSINPY-FAIVFTNTKEQADEVTAAMQEAGLNVECLHGGLQPRQRKQIMKQVKEVKMQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+D+  V H+ NF +P   + Y+HR+GRT RAG  G A+T+  + D    
Sbjct: 299 YLVATDLAARGIDVKGVTHIINFGLPKDLDFYVHRVGRTARAGADGVAYTIFEQNDQL-- 356

Query: 358 DAIEKLIEKKV-----DWLNGDLSSLN-PPL 382
            A+EKL+++ +     D+  G+   L+ PPL
Sbjct: 357 -AVEKLLKRGITFTYYDFKRGEWQKLDKPPL 386


>gi|327467234|gb|EGF12738.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK330]
          Length = 447

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 197/369 (53%), Gaps = 15/369 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L++    V+    +I  P+RELAAQ+   A     + +   + VA  +GG     Q  
Sbjct: 61  QMLDEEADSVQ---AVITAPSRELAAQIYQAARQLASFSER-EIRVANYVGGTDKARQIG 116

Query: 118 KLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           KLE     ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P 
Sbjct: 117 KLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPK 176

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TIE+  ++T  +  K   + Q
Sbjct: 177 DLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGR-DKNAQIYQ 235

Query: 237 --QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             QLLQ    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K  
Sbjct: 236 ISQLLQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D 
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLLGTAITLYQPSDD 351

Query: 355 KHIDAIEKL 363
             I  +EK+
Sbjct: 352 SDIRELEKM 360


>gi|195583246|ref|XP_002081434.1| GD25714 [Drosophila simulans]
 gi|194193443|gb|EDX07019.1| GD25714 [Drosophila simulans]
          Length = 827

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 115/357 (32%), Positives = 200/357 (56%), Gaps = 6/357 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   GY  PTPIQ KTIPL+L+  DV  +A+TG+GKTA F++P+   
Sbjct: 41  FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++ R   +  R LIL PTRELA Q     ++ G+   L   L++GG   ++Q   +   
Sbjct: 101 LQR-REPTKGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTC 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR L       L +N+IE +V DEADR+ +MGF   +      +P +RQT++
Sbjct: 160 PDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQTVM 219

Query: 183 FSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           FSAT+   L + +   L +P   R++V +    A  ++  +     +Y+    LL+ ++ 
Sbjct: 220 FSATLPKLLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYVIP 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      ++F   + +V  + + L + G S  +++ ++D  +R    + F    + +++
Sbjct: 280 VES---QTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLI 336

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +D+AARG+DIP +  V N   P + + ++HR+GR  RAGR G A+++V+ +D  H+
Sbjct: 337 VTDVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHL 393


>gi|332637236|ref|ZP_08416099.1| ATP-dependent RNA helicase [Weissella cibaria KACC 11862]
          Length = 452

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 126/369 (34%), Positives = 197/369 (53%), Gaps = 17/369 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P++  A+ +  +  PT +Q + IP+V+Q   V G +QTG+GKT +F++P+   
Sbjct: 4   FTDYNLRPEIYTALDEIRFTTPTKVQERLIPVVMQGRSVVGQSQTGSGKTHTFLIPIFQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY----NLTVALLIGGIPFEAQNKK 118
            +    +V+    +I  P+RELA Q+    ++ G  +       + L +GG     Q  +
Sbjct: 64  FDPTAQKVQ---AVITTPSRELAQQIYAAAKQLGTGFPADQQPRIGLYVGGTDKVRQMHQ 120

Query: 119 LERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           LE     ++I TPGRI D +  G L ++    LV+DEAD  +D+GF+P +  I   +P  
Sbjct: 121 LESTQPQIVIGTPGRIKDLYTAGGLDIHTASALVVDEADMTMDLGFLPEVDAIAGAMPED 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   E+ T +  A TI +  V T     KK  L+ +
Sbjct: 181 LQMLVFSATIPQKLQPFLKKYLTNPVVEEIPTETVIAPTITNLLVGTKGM--KKDDLVYE 238

Query: 238 LLQSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LL    TM N    ++F N K+    L  +L  +G  V  IHG I  R R + +   +  
Sbjct: 239 LL----TMGNPYMALVFTNTKERARELTKALRNRGLKVAEIHGGIQPRERKRTMQQIQHL 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             Q +VA+DLAARG+DIP V  + N  +P   E ++HR+GRTGR G  G A T+   ++ 
Sbjct: 295 DYQYVVATDLAARGIDIPGVSLIINDGIPTELEFFVHRVGRTGRNGMEGTAITIYNPDEE 354

Query: 355 KHIDAIEKL 363
           + + A+E +
Sbjct: 355 ERVQAVENM 363


>gi|187960121|ref|NP_001120807.1| nucleolar RNA helicase 2 [Danio rerio]
 gi|169642686|gb|AAI60629.1| Ddx21 protein [Danio rerio]
          Length = 759

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 132/375 (35%), Positives = 207/375 (55%), Gaps = 23/375 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +SP  +  +   G      IQ+KT   V    D+ G A+TGTGKT SF +P++  
Sbjct: 168 FSNFRISPNTIKLLQARGVSYLFDIQVKTFNAVYDGKDLIGQARTGTGKTFSFAVPLVEK 227

Query: 63  LEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ G   R R R P+ L+L PTRELA QV  +F+   +   L+V    GG  +  Q   +
Sbjct: 228 LQSGDQERRRGRPPKVLVLAPTRELAIQVTKDFKDITRK--LSVTCFYGGSSYNPQIDAI 285

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G DVL+ TPGRI DH    KL ++ ++ +V+DE D+MLDMGF   ++ I S   + + 
Sbjct: 286 RSGIDVLVGTPGRIRDHLQNNKLDLSQLQHVVLDEVDQMLDMGFAEQVEEILS-ASYKKD 344

Query: 179 -----QTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTAETIEHCFVATYAQYS 229
                QTLLFSAT    +  V++ ++++ + I V+         A T+EH  +A +  +S
Sbjct: 345 AEQKPQTLLFSATCPSWVYDVAKKYMRS-QFIHVDLIGKKTQKAATTVEHLAIACH--WS 401

Query: 230 KKCALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLE-KQGFSVCAIHGNIDQRSRMKI 287
           ++ +++  ++Q    +    I+FC  KK    L  +   KQ  S  ++HG+I Q+ R   
Sbjct: 402 QRASVIGDVIQVYSGSHGRTIVFCETKKEATELSLNTSIKQ--SAQSLHGDIPQKQREVT 459

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L  F+ G+ +++VA+++AARGLDIP+V  V     PN  E+YIHR GRTGRAGR G    
Sbjct: 460 LKGFRNGSFEVLVATNVAARGLDIPEVDLVIQSSPPNDVESYIHRSGRTGRAGRTGICIC 519

Query: 348 LVAKEDIKHIDAIEK 362
              +++   +  +E+
Sbjct: 520 FYQRKEESQLKFVEQ 534


>gi|326777924|ref|ZP_08237189.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|326658257|gb|EGE43103.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 521

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 121/347 (34%), Positives = 184/347 (53%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L +   +  A++  G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 80  FGELEMPAPLKAALVAEGMTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 139

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  + P  L+L PTRELA QV D    Y ++  L +A ++GG+    Q   L  G
Sbjct: 140 TAGRRADAKRPLALVLVPTRELAQQVTDALTPYARSLKLRIATVVGGMSIGRQAGALRGG 199

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D   RG   ++ + I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 200 AEVVVATPGRLKDLIERGDCRLDRVTITVLDEADQMADMGFMPQVTELLDQVNPDGQRML 259

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L++P    V+  +    T+EH  +  Y Q + K A   ++    
Sbjct: 260 FSATLDRNVDLLVRTYLKDPVVHSVDPAAGAVTTMEHHVL--YVQGADKYATTTEIAARD 317

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F + K  V  L   L   G    A+HG   Q  R + L  FK G + ++VA+
Sbjct: 318 GRV---IMFLDTKHAVDKLTDHLLHSGVRAAALHGGKSQPQRTRTLERFKTGHVTVLVAT 374

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARG+ + ++  V N D P+  ++Y+HR GRT RAG  G   TLV
Sbjct: 375 NVAARGIHVDNLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTLV 421


>gi|315047704|ref|XP_003173227.1| ATP-dependent RNA helicase DHH1 [Arthroderma gypseum CBS 118893]
 gi|311343613|gb|EFR02816.1| ATP-dependent RNA helicase DHH1 [Arthroderma gypseum CBS 118893]
          Length = 508

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 133/431 (30%), Positives = 217/431 (50%), Gaps = 24/431 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +   ++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFEDFYIKRDLMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E+   ++   + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 107 ---ERTNPKIAKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLN 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   ++     V+DEAD++L   F P I+ + +  P  RQ 
Sbjct: 164 DTVHIIVGTPGRILDLASKGVADLSECTTFVMDEADKLLSPEFTPVIEQLLTFHPKDRQV 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  ++NP  I +     T   I   +   + +  +K   L  L  
Sbjct: 224 MLFSATFPIIVKTFKDKHMRNPYEINL-MDELTLRGITQYYA--FVEERQKVHCLNTLF- 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRYNLYKI 399

Query: 361 EKLIEKKVDWLNGDLS----------------SLNPPLEKIDIAQHNHARKNNPIPQKST 404
           E+ +  ++  +   +                 S NPP +    +Q NH R+ +  P    
Sbjct: 400 EQELGTEIQPIPPSIDKKLYVYDTPNTIPRPISNNPPEQHKPTSQENHPRRQSNNPSNGH 459

Query: 405 G-FDRRKKNYS 414
           G ++  + +YS
Sbjct: 460 GQYNSNRGHYS 470


>gi|82540694|ref|XP_724645.1| RNA helicase-1 [Plasmodium yoelii yoelii str. 17XNL]
 gi|23479359|gb|EAA16210.1| RNA helicase-1 [Plasmodium yoelii yoelii]
          Length = 443

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 125/352 (35%), Positives = 193/352 (54%), Gaps = 13/352 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL+ K++  +   G+ KP+ IQ + I  +L+ +D  G AQ+GTGKTA+FV+  L +
Sbjct: 25  FDALGLNEKLLRGIYSYGFEKPSAIQQRGIKPILKGYDTIGQAQSGTGKTATFVISSLQL 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +       +    LIL PTRELA Q+       G    +     +GG        KL++G
Sbjct: 85  INYDYVACQ---ALILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDIDKLKQG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPFTRQTL 181
             +++ TPGR+ D  ++  L ++ +++ ++DEAD ML  GF   I  +   LVP   Q  
Sbjct: 142 VHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVP-DIQVA 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQL 238
           LFSATM  E+ +++  F+++PK I V     T E I   +VA   +  K    C L + L
Sbjct: 201 LFSATMPQEILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLCDLYETL 260

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                T+   II+CN +K V  L   +  + F+V  +HG++DQ+ R  I+  F+ G+ ++
Sbjct: 261 -----TITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRV 315

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           +V +DL ARG+D+  V  V N+D+P   + YIHRIGR+GR GR G A   V 
Sbjct: 316 LVTTDLLARGIDVQQVSLVINYDLPCSPDTYIHRIGRSGRFGRKGVAINFVT 367


>gi|229071788|ref|ZP_04205003.1| ATP-dependent RNA helicase yqfR [Bacillus cereus F65185]
 gi|228711383|gb|EEL63343.1| ATP-dependent RNA helicase yqfR [Bacillus cereus F65185]
          Length = 436

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 125/378 (33%), Positives = 212/378 (56%), Gaps = 14/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L  
Sbjct: 6   FTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           +   R  V++   +I  PTRELA Q+ +   K  K    +  +T   LIGG   +   +K
Sbjct: 66  INASREEVQL---VITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +    
Sbjct: 123 LKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMSKNL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ- 237
           Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +  ++  K  L+ + 
Sbjct: 183 QMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPS--KHRNKIDLVHKM 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ +  +   ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 241 LLQFKPYL--AVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|325116173|emb|CBZ51727.1| putative ATP-dependent helicase, putaive [Neospora caninum
           Liverpool]
          Length = 395

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 124/376 (32%), Positives = 202/376 (53%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G    ++  +   G+ +P+ +Q + I  +++  DV   +Q+GTGKT  F L  L  
Sbjct: 24  FDSMGFKEDLLRGIYAYGFERPSAVQQRAIVPIMKGRDVIVQSQSGTGKTCVFCLGCLQC 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    +VR P+ LIL PTRELA Q        G   ++ V   IGG       + LE G
Sbjct: 84  ID---PKVRDPQALILSPTRELAEQSQKVCLALGDYMSVQVHCCIGGKRVGDDIRALEAG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+     +      +I++LV+DEAD ML+ GF   + +I   +P + Q +L
Sbjct: 141 VHIVSGTPGRVFHMIAQRHFSTRHIKLLVLDEADEMLNRGFKEQVYDIYRYLPPSTQVVL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  E+ +++  F+ +P R+ V     T E I+  FVA   +  K   L    L   
Sbjct: 201 VSATLPHEVLEMTTKFMDDPFRVLVKRDELTLEGIKQFFVAVEREQWKFDTLTD--LYDT 258

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN K  V  L   +++  F+V  +HG++ Q+ R +I+  F+ G  ++++A+
Sbjct: 259 LTITQAVIFCNTKAKVEWLAQKMKEANFTVSRMHGDMPQQERDEIMRQFRGGQSRVLIAT 318

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+  RGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE+
Sbjct: 319 DVWGRGLDVQQVSLVINYDLPNSRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRDIEQ 378

Query: 363 LIEKKVDWLNGDLSSL 378
               ++D +  +++ L
Sbjct: 379 YYATQIDEMPMNVADL 394


>gi|322705100|gb|EFY96688.1| ATP-dependent RNA helicase dbp3 [Metarhizium anisopliae ARSEF 23]
          Length = 596

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 129/356 (36%), Positives = 189/356 (53%), Gaps = 24/356 (6%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML----TILEKGRARVRMPR 74
           A +  PTPIQ  + P  L   DV G+A+TG+GKT +F LP +     I +KG       +
Sbjct: 194 ANFKAPTPIQAASWPSTLSGRDVVGVAETGSGKTMAFALPCVESVSAIGKKG------TK 247

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            +I+ PTRELA Q             L    L GG   + Q   + RGAD+++ TPGR+ 
Sbjct: 248 AVIVSPTRELAMQTHTQLASLAALAKLKCVCLFGGSSKDEQRAMVNRGADIIVATPGRLK 307

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI--TSLVPFTRQTLLFSATMTDELQ 192
           D  + G + ++  +  V+DEADRMLD GF   I+ I    L    RQTL+F+AT    +Q
Sbjct: 308 DFMSDGTVDLSGCQFAVLDEADRMLDKGFEDDIKQILGACLARERRQTLMFTATWPQSVQ 367

Query: 193 KVSENFLQNPKRIEVN-----TPSSTAETIEHCFVATYAQY----SKKCALLQQLLQSQD 243
            ++  F+ +P +I +      T + + E   +  ++   +      K+  LLQ L Q Q 
Sbjct: 368 ALASTFMVDPVKITIGSGGKETENGSVELQANTRISQKVEVVDPKDKEFRLLQILKQHQQ 427

Query: 244 TMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     ++FC  KK    + + L ++G  V  IHG++ Q  R + L  FK G   ++V
Sbjct: 428 GKQKNDRILVFCLYKKEATRVENFLSRKGIRVGGIHGDLKQEQRTRSLEAFKTGQTPVLV 487

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           A+D+AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG+ G+A TL   +D  H
Sbjct: 488 ATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKTGEAHTLFTVQDKAH 543


>gi|196248942|ref|ZP_03147642.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
 gi|196211818|gb|EDY06577.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
          Length = 436

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 133/384 (34%), Positives = 204/384 (53%), Gaps = 12/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P V+ A+    + KPT IQ + IP  L+   + G +QTGTGKT +++LP++  
Sbjct: 6   FTRFPFQPFVIEAIQALRFYKPTEIQERIIPKALRGESMVGQSQTGTGKTHAYLLPIIEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           ++  RA V+    +I  PTRELA Q+     K  K    +  +     IGG   +   +K
Sbjct: 66  IDPERAEVQ---AVITAPTRELATQIYHETLKITKFCPKDRMIVARCFIGGTDKQKALEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L     ++I TPGRI D      L ++    LV+DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LHVQPHIVIGTPGRINDFIREQALDVHTACTLVVDEADLMLDMGFITDVDQIAARMPKEL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+   + +++NP  I+V    +  + IEH  +    +  +K  LL  +
Sbjct: 183 QMLVFSATIPEKLKPFLKKYMENPTFIQVEPKQTANKNIEHVLIPLRGR--EKVKLLYDV 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S +     I+F N +K    +   L +QG  V  +HG++  R R K+++  ++   Q 
Sbjct: 241 LVSYNPY-LAIVFVNTRKRADEVADQLAEQGLKVGVLHGDLTPRERKKMMNQIRDLEFQY 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N+++P+  + YIHR GRT RAG  G A T+    D   I 
Sbjct: 300 VVATDLAARGIDIEGVSHVINYELPDDLQFYIHRAGRTARAGYSGIAATIYEPTDQDAIA 359

Query: 359 AIEKLIEKKV--DWLNGDLSSLNP 380
            +EK+    V  D + G+   L P
Sbjct: 360 RLEKMGISFVHRDLVRGEWKELPP 383


>gi|326430321|gb|EGD75891.1| DEAD box polypeptide 41 [Salpingoeca sp. ATCC 50818]
          Length = 619

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 132/363 (36%), Positives = 199/363 (54%), Gaps = 17/363 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVK-PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           +F D+ L P  +   LD+  +K PTPIQ++ +P+ L   D+ GIA TG+GKT  F LP  
Sbjct: 183 NFRDMKL-PTCLVDYLDSQGIKTPTPIQMQGLPVALSGRDMIGIAFTGSGKTLCFSLPAI 241

Query: 59  MLTILEKGR---ARVRMPRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGG 109
           MLT+ ++ +    R   P   +L P+RELA Q  D  ++Y      G    L + L +GG
Sbjct: 242 MLTMEQEIKMPFQRGEGPYACVLCPSRELARQTFDAVKEYAGVLHKGGMPKLNIVLCMGG 301

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +    Q  +      + +CTPGR++D   + K   N      +DEADRM+D+GF   I+ 
Sbjct: 302 VDMREQLYECHNIVHIAVCTPGRLIDMLTKKKFTFNVCRYFCMDEADRMVDLGFEEDIRT 361

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I S     RQT+LFSATM  +++  +++ L +P  I VN   + A +++      + +  
Sbjct: 362 IFSFFNGQRQTVLFSATMPTKIRDFAQSALVDP--ITVNVGRAGAASLDVVQEVEHVRPE 419

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            K   L + LQ   T    +IF  +K +V ++   L  +G    AIHG  DQ  R   + 
Sbjct: 420 AKIVYLLECLQK--TPPPVMIFSEKKADVDDIHEYLLLKGVQAVAIHGGKDQEERDMAVK 477

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK+G   ++VA+D+A++GLD   + HV NFD+P+  ENY+HRIGRTGR+GR G A T +
Sbjct: 478 AFKKGQKDVLVATDIASKGLDFKGIQHVINFDMPDELENYVHRIGRTGRSGRTGLATTFI 537

Query: 350 AKE 352
             E
Sbjct: 538 NDE 540


>gi|302692416|ref|XP_003035887.1| hypothetical protein SCHCODRAFT_65679 [Schizophyllum commune H4-8]
 gi|300109583|gb|EFJ00985.1| hypothetical protein SCHCODRAFT_65679 [Schizophyllum commune H4-8]
          Length = 620

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 130/359 (36%), Positives = 191/359 (53%), Gaps = 16/359 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--ML 60
           F D+ +   ++  +     + PTPIQI+ IP      D+ GIA TG+GKT +F LP  M 
Sbjct: 185 FEDMKIPRGILDYLKSKRIIDPTPIQIQGIPTAFSGRDIIGIAFTGSGKTLAFCLPLIMF 244

Query: 61  TILEKGR---ARVRMPRTLILEPTRELAAQVADN-------FEKYGKNYNLTVALLIGGI 110
            + E+ +    R   P  +IL P+RELA Q  +N         K G+   L   L IGGI
Sbjct: 245 ALEEEMKLPFVRGEGPVGVILCPSRELANQTYENVLAWCEALAKEGRYPQLNTLLCIGGI 304

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q   + +G  ++I TPGR++D   + +L  NN + + +DEADRM+D+GF   ++NI
Sbjct: 305 SMNDQAHVMSKGIHIVIATPGRLIDMLEKKRLTFNNCKYMCMDEADRMVDLGFEEDVRNI 364

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  +++  ++  L  P  I +N   + A  ++   V  Y +   
Sbjct: 365 MSYFKRQRQTLLFSATMPQKIRDFAQQSLIQP--ILINVGRAGAANLDVLQVVEYVKQEA 422

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K   L + LQ   T    IIF   K  V ++   L  +G    AIHG+  Q  R   + +
Sbjct: 423 KMVYLLECLQK--TPPPVIIFSENKNEVDDIQEYLLLKGVEAVAIHGSKSQEERQYAIKS 480

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           FK G   +MVAS +A++GLD  ++ HV  F +P   E+Y+H+IGRTGR+G+ G A T V
Sbjct: 481 FKSGAKDVMVASGVASKGLDFNEIQHVIIFTMPKEIEDYVHQIGRTGRSGKTGIATTFV 539


>gi|218259702|ref|ZP_03475335.1| hypothetical protein PRABACTJOHN_00994 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224948|gb|EEC97598.1| hypothetical protein PRABACTJOHN_00994 [Parabacteroides johnsonii
           DSM 18315]
          Length = 372

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 120/355 (33%), Positives = 201/355 (56%), Gaps = 10/355 (2%)

Query: 55  FVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IP 111
           +VLP++  L KG         +I+ PTRELA Q+    E +     ++   + GG   I 
Sbjct: 1   YVLPVINELSKGLHPANAINAIIMAPTRELAQQIDQQIEGFTYFVPVSAVAVYGGTDGIA 60

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q + +E GAD++I TPGR+L H   G + ++ +   ++DEADRMLDMGF   I  + 
Sbjct: 61  WEQQKRGMEMGADIVIATPGRLLSHIKLGTVDLSQVSFFILDEADRMLDMGFYDDIMQVY 120

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            L+P T QT++FSATM  +++ +++  L+NP+ +++   S   ETI       Y    +K
Sbjct: 121 KLLPETCQTIMFSATMPPKIRTLAQTILKNPEEVKIAI-SRPPETIMQTAYVCYDM--QK 177

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             +L+ L  SQ   +  IIF + K  V  L  +L++  F+V A+H +++Q  R +++  F
Sbjct: 178 LRILEDLF-SQSRPQRVIIFSSSKMKVKELASTLKRMKFNVAAMHSDLEQSQREEVMKEF 236

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVA 350
           K G I ++VA+D+ +RG+DI D+  V NFD+P+  E+Y+HRIGRT R     G A T ++
Sbjct: 237 KNGRIDILVATDVVSRGIDINDIKLVINFDIPHDPEDYVHRIGRTARGTNGEGLAITFIS 296

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            E+      IE+ ++K++  +  D      PL + +  ++++ R+    P+K  G
Sbjct: 297 TEEQFQFKRIEEFLDKEIYKIPIDPKFGETPLYEPE--KYSNMRRGRGRPRKDGG 349


>gi|148678591|gb|EDL10538.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_a [Mus
           musculus]
          Length = 354

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 120/329 (36%), Positives = 193/329 (58%), Gaps = 13/329 (3%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG++  V+C   D  G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 29  FKDLGVT-DVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 88  ALLETPQRL---FALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 144

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K   +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 145 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 204

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQL 238
            LFSATMT ++QK+    L+NP +  V++   T E ++  + F+ +  + +    +L +L
Sbjct: 205 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 264

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +     + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +
Sbjct: 265 AGN-----SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 319

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAE 327
           ++A+D+A+RGLDIP V  V NFD+P  ++
Sbjct: 320 LLATDVASRGLDIPHVDVVVNFDIPTHSK 348


>gi|313619263|gb|EFR91012.1| ATP-dependent RNA helicase DbpA [Listeria innocua FSL S4-378]
          Length = 435

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 124/333 (37%), Positives = 186/333 (55%), Gaps = 17/333 (5%)

Query: 39  HDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
            D+   +QTG+GKTA+F +P   I E+       P+ LI+ PTRELA QV       G+ 
Sbjct: 2   EDIVAKSQTGSGKTAAFAIP---IAEQVVWEENKPQALIIVPTRELAMQVKTECTNIGRF 58

Query: 99  YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             +  A + G  PF  Q  +L +   +++ TPGR+LDH  +G L ++ +  LV+DE D M
Sbjct: 59  KRIKAAAIYGQSPFAKQKLELSQKNHIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEM 118

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
           L MGFI  +++I S +P  RQ L FSAT+ +E+Q + + +  NP  IE+   S     I 
Sbjct: 119 LSMGFIDQVEDILSRLPKQRQNLFFSATLPEEMQDLIKRYQDNPMVIEM--ASEKTNPIF 176

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
           H  +    Q   K   L+ +L +++   + IIFCN K  V  L   L+        IHG 
Sbjct: 177 HVEM----QTDNKEKTLKDVLITENP-DSAIIFCNTKNQVDELTDLLD---VKASKIHGG 228

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
           + Q  R + + +FK G  + ++A+D+A RG+D+ +V  V N+D+P   ENY+HRIGRTGR
Sbjct: 229 LRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGR 288

Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKL----IEKK 367
           AG+ GKA + V   +   +  IE++    IEKK
Sbjct: 289 AGKSGKAISFVKTNENPLLRDIEEMLNITIEKK 321


>gi|307189936|gb|EFN74172.1| Eukaryotic initiation factor 4A-II [Camponotus floridanus]
          Length = 423

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 135/379 (35%), Positives = 215/379 (56%), Gaps = 9/379 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F    ++
Sbjct: 51  NFDEMNLKEELLRGIYAYGFEKPSAIQQRAILPCIRGLDVIAQAQSGTGKTATF---SIS 107

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    ++  + LIL PTRELA Q+       G   +      IGG       +KL++
Sbjct: 108 ILQQIDTSIKECQALILAPTRELAQQIQKVVIALGDFMHAECHACIGGTNVREDMRKLDQ 167

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  +R  L  N+I++ V+DEAD ML  GF   I ++  L+P   Q +
Sbjct: 168 GVHVVVGTPGRVYDMISRRALRANSIKLFVLDEADEMLSRGFKDQIHDVFKLLPNEVQVI 227

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++  VS+ F++NP RI V     T E I+  FV    +  K    L+ L   
Sbjct: 228 LLSATMPSDVLDVSKCFMRNPIRILVKKEELTLEGIKQFFVYVEREDWK----LETLCDL 283

Query: 242 QDTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            DT+     +IFCN ++ V  L  S+ K+ F+V A+HG+++Q+ R  I+  F+ G+ +++
Sbjct: 284 YDTLSITQAVIFCNTRRKVDWLTESMHKRDFTVSAMHGDMEQKERDLIMRQFRTGSSRVL 343

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V +ED + +  
Sbjct: 344 ITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTEEDKRTLKD 403

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+     +D +  +++ L
Sbjct: 404 IEQFYNTHIDEMPMNVADL 422


>gi|294655023|ref|XP_457109.2| DEHA2B03322p [Debaryomyces hansenii CBS767]
 gi|218512020|sp|Q6BXG0|DBP4_DEBHA RecName: Full=ATP-dependent RNA helicase DBP4
 gi|199429633|emb|CAG85100.2| DEHA2B03322p [Debaryomyces hansenii]
          Length = 766

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 124/355 (34%), Positives = 200/355 (56%), Gaps = 13/355 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL +S +    + +A +   T IQ KTIP+ L+  DV G A+TG+GKT +F++P +  
Sbjct: 48  FSDLPISEETARGLKEASFASLTDIQKKTIPISLKGEDVMGTAKTGSGKTLAFLIPTIES 107

Query: 63  LEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         LI+ PTRELA Q+ +   K GK+ N +  L+ GG   + + +++ +
Sbjct: 108 LIRNKITEYDGLAALIISPTRELAVQIFEVLVKIGKHNNFSAGLVTGGKDVKYEKERVSK 167

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+ TPGRI  H N    +  +N+++LV+DEADR LDMGF   I NI   +P TRQT
Sbjct: 168 -MNILVGTPGRISQHLNESVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPPTRQT 226

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTP---SSTAETIEHCFVATYAQYSKKCALLQQ 237
           LLFSAT +D ++ ++   L NPKR+ +++    S+T E++E  ++       +K  +L  
Sbjct: 227 LLFSATQSDSVKDLARLSLANPKRVGISSDQELSATPESLEQYYIKI--PLDEKLDVLWS 284

Query: 238 LLQSQDTMKNGI-IFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            ++S   +K+ I +F +  K V     +    + G S+  ++G   Q SRM+    F + 
Sbjct: 285 FIKSH--LKSKILVFFSSSKQVQYAYETFRTLQPGISLLKLYGRHKQTSRMETTMKFSQA 342

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
               + A+D+ ARGLD P +  V   D P  A  Y+HR+GR  R GR GK+  ++
Sbjct: 343 QHACLFATDIVARGLDFPAIDWVVQIDCPEDAATYVHRVGRAARFGRAGKSLMML 397


>gi|63139086|gb|AAY33860.1| eukaryotic initiation factor 4A [Pennisetum glaucum]
          Length = 414

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 124/354 (35%), Positives = 188/354 (53%), Gaps = 11/354 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 43  FDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G    +    L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 103 LDYGLVECQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASG 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 160 VHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKIQVGV 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 220 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLA 279

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 280 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D
Sbjct: 335 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 388


>gi|290963039|ref|YP_003494221.1| DEAD-box RNA helicase [Streptomyces scabiei 87.22]
 gi|260652565|emb|CBG75698.1| probable DEAD-box RNA helicase [Streptomyces scabiei 87.22]
          Length = 497

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 138/428 (32%), Positives = 214/428 (50%), Gaps = 16/428 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +  +++  +   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 71  FDDLDMPRQLLAELHRQGVTVPFPIQGATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 130

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y ++  L +A ++GG+    Q   L  G
Sbjct: 131 TAGQRAEPRHPLGLVLVPTRELAQQVTDALTPYARSVGLRLATVVGGMSIGRQAGMLRAG 190

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D   RG+  +N + I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 191 AEVVVATPGRLKDLIERGECRLNQVGITVLDEADQMADMGFMPQVTALLDQVRPEGQRML 250

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  +    T+EH  +  +    K  A ++  + ++
Sbjct: 251 FSATLDRNVDLLVRRYLSDPVVHSVDPSAGAVTTMEHHLLHVHG-ADKHAATIE--IAAR 307

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D     I+F + K  V  L   L   G    A+HG   Q  R + L+ FK G + ++VA+
Sbjct: 308 DGRV--IMFLDTKHAVDRLAQDLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVAT 365

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID---A 359
           ++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV     + +D   A
Sbjct: 366 NVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRSMDRLMA 425

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
              +  +     +GD S     L +I  AQ   A    P+   +   +R K+  SS+   
Sbjct: 426 AAGIRPQSTQIRSGDES-----LSRITGAQ---APSGVPVVITAPVVERPKRAPSSRGRR 477

Query: 420 IPLKESEK 427
            P   + +
Sbjct: 478 RPASATRR 485


>gi|328912646|gb|AEB64242.1| DEAD-box RNA helicase [Bacillus amyloliquefaciens LL3]
          Length = 447

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 127/369 (34%), Positives = 196/369 (53%), Gaps = 19/369 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L P ++ AV   G+ +PT IQ + IP VL+   V G +QTGTGKT +++LP+L  
Sbjct: 15  FDGYNLKPFIIDAVHRLGFYEPTDIQKRLIPAVLKNESVIGQSQTGTGKTHAYLLPILNR 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           ++ G   V+    +I  PTRELA Q+   A    +  ++  +     IGG   +    KL
Sbjct: 75  IDPGSDTVQ---AVITAPTRELANQIYQEALKITQGAEDEQIRTKCFIGGTDKQKSIDKL 131

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +++ TPGRI D      L +   + LVIDEAD MLD+GF+  +  I S +P   Q
Sbjct: 132 KTQPHLVVGTPGRIADLIKAQALNVYKAQSLVIDEADLMLDLGFLEDVDYIGSRMPEELQ 191

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+ ++L+   + +++NPK   V     TAE IEH  V +  +   K        
Sbjct: 192 MLVFSATIPEKLKPFLKKYMENPKYAHVEPKRITAEKIEHVLVPSKQRDKDKLLF----- 246

Query: 240 QSQDTMKN-----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
              D M N     GI+F N K    ++   L ++G  +  +HG +  R R K++    + 
Sbjct: 247 ---DMMSNLNPYLGIVFANTKNTADHIAKYLTEKGMRIGLLHGGLTPRERKKVMKQINDL 303

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
               ++A+DLAARG+DI  V HV N+++P+  + Y+HR+GRT RAG  G+A T+    D 
Sbjct: 304 EFTYVIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQALTIYELSDE 363

Query: 355 KHIDAIEKL 363
             +  +EK+
Sbjct: 364 DALVRLEKM 372


>gi|149511215|ref|XP_001519332.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
           [Ornithorhynchus anatinus]
          Length = 790

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 134/356 (37%), Positives = 199/356 (55%), Gaps = 23/356 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  + D G     PIQ+KT   V +  DV   A+TGTGKT SF +P+   
Sbjct: 184 FSNFPISEQTIRLLKDRGVTYLFPIQVKTFHHVYEGRDVVAQARTGTGKTFSFAIPLTEK 243

Query: 63  LEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L++ R    R   P+ L+L PTRELA QVA +F+   +   LTVA   GG P+  Q   +
Sbjct: 244 LQRKREEQKRGYPPKVLVLTPTRELANQVAKDFKDITRT--LTVACFYGGTPYNGQIDLI 301

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            +G D+L+ TPGRI DH   G+L +  +  +V+DE D+MLDMGF   ++ I S   + R 
Sbjct: 302 RKGIDILVGTPGRIKDHLESGRLDLTKLYHVVLDEVDQMLDMGFAEDVEKIISGA-YNRE 360

Query: 179 -----QTLLFSATMTDELQKVSENFLQNPKRIEVNT----PSSTAETIEHCFVATYAQYS 229
                QTLLFSAT    + KV++ +++  K  +V+         A T+EH  +A   + +
Sbjct: 361 SEDNPQTLLFSATCPQWVYKVAKKYMK-AKYEQVDLIGKLTQKAATTVEH--LAIQCREN 417

Query: 230 KKCALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLC-HSLEKQGFSVCAIHGNIDQRSRMKI 287
           ++ A++  ++Q         I+FC  KK+   +  +S  KQ     A+HG+I Q  R   
Sbjct: 418 QRAAVIGDVIQVYSGNQGRAIVFCETKKDATEMALNSNIKQ--EAQALHGDIAQSQREIT 475

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           L  F+ G  +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 476 LKGFRNGVFKVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTG 531


>gi|125586856|gb|EAZ27520.1| hypothetical protein OsJ_11472 [Oryza sativa Japonica Group]
          Length = 394

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 195/379 (51%), Gaps = 21/379 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G+   ++  +   G+ KP+ IQ + +  ++   DV   AQ+GTGKT+   L +  I
Sbjct: 33  FDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQI 92

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + LIL PTRELAAQ        G   N+ V   IGG       +KLE G
Sbjct: 93  VDTA---VREVQALILSPTRELAAQTERVMLAIGDYINIQVHACIGGKSIGEDIRKLEHG 149

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++L++DEAD ML  GF   I ++   +P   Q  L
Sbjct: 150 VHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQVCL 209

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 210 ISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL- 268

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   +    F+V A+HG++ Q+ R  I+  F+ G  +++
Sbjct: 269 ----TITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVL 324

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +          DV  V N+D+PN  E YIHRIGR+GR GR G A   V KEDI+ +  
Sbjct: 325 ITT----------DVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILRD 374

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ L
Sbjct: 375 IEQYYSTQIDEMPMNVADL 393


>gi|14594802|emb|CAC43286.1| translation initiation factor eIF-4A1 [Arabidopsis thaliana]
          Length = 369

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 199/376 (52%), Gaps = 11/376 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  L+ 
Sbjct: 1   MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDF 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
              + +    L+L PTRELA Q+       G    + V   +GG       + L+ G  V
Sbjct: 61  SLIQCQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHV 117

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           ++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  +FSA
Sbjct: 118 VVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSA 177

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLLQSQ 242
           TM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L  +Q
Sbjct: 178 TMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQ 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ +
Sbjct: 238 -----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITT 292

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V ++D + +  I+K
Sbjct: 293 DLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 352

Query: 363 LIEKKVDWLNGDLSSL 378
                V+ L  +++ L
Sbjct: 353 FYNVVVEELPSNVADL 368


>gi|156844392|ref|XP_001645259.1| hypothetical protein Kpol_1060p58 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160395530|sp|A7TK55|IF4A_VANPO RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|156115918|gb|EDO17401.1| hypothetical protein Kpol_1060p58 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 396

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 213/377 (56%), Gaps = 8/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L  +++  V   G+ +P+ IQ + I  +++ HDV   AQ+GTGKT +F +  L  
Sbjct: 25  FDDMNLKDELLKGVYGYGFEEPSAIQQRAILPIVEEHDVLAQAQSGTGKTGTFSIAAL-- 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            ++  + ++ P+ LIL PTRELA Q+         + ++ V   IGG  F    + L + 
Sbjct: 83  -QRIDSSIKAPQALILAPTRELALQIQKVVIALAFHMDVKVHACIGGTSFVEDTEGL-KD 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A +++ TPGR+ D+  R +   +NI++ ++DEAD ML  GF   I  I +++P T Q +L
Sbjct: 141 AQIVVGTPGRVSDNIQRHRFKTDNIKMFILDEADEMLSSGFREQIYQIFTMLPPTTQVVL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQLLQS 241
            SAT+  ++ +V+  F++NP RI V     T E I+  ++     QY   C  L  L  S
Sbjct: 201 LSATLPGDVLEVTTKFMRNPIRILVKKDELTLEGIKQFYINVEEEQYKFDC--LSDLYDS 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   L +  F+V +I+ ++ Q+ R  I+  F+ G+ +++++
Sbjct: 259 I-SVTQAVIFCNTRRKVEELTQKLTESNFTVSSIYSDLPQQERDVIMKEFRSGSSRILIS 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  ED+  +  IE
Sbjct: 318 TDLLARGIDVQQVSLVINYDLPTNKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMREIE 377

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    +++ L  D++ +
Sbjct: 378 KFYSTQIEELPADVAEM 394


>gi|307243961|ref|ZP_07526085.1| DEAD/DEAH box helicase [Peptostreptococcus stomatis DSM 17678]
 gi|306492678|gb|EFM64707.1| DEAD/DEAH box helicase [Peptostreptococcus stomatis DSM 17678]
          Length = 358

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 115/367 (31%), Positives = 211/367 (57%), Gaps = 13/367 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D+G+   +V A+  +G   PTP+Q  +I  +L   ++   + TGTGKT +F++P++
Sbjct: 1   MTFTDIGIDINIVEALAKSGIKSPTPVQATSIGKILHGQNLIIESNTGTGKTLAFLVPLI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             +  G+    + + L+L PTREL  Q+ +  +      +  +++L   GG   ++Q KK
Sbjct: 61  NRIYLGQ----VDKVLVLAPTRELVIQIGNAAQSIVDKLDKDISILPIYGGRDIQSQIKK 116

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+   +++I TPGR+LDH NR  + ++NI  LV+DEAD+ML MGF   I  +        
Sbjct: 117 LKNKINIVIATPGRLLDHINRKSIDISNIGCLVLDEADQMLLMGFRNEIDTVIRNTKKYD 176

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQ 236
           Q L  SAT+  +++K++  + +    + +++ +   + I+  F+ T    ++   C ++ 
Sbjct: 177 QILFLSATVDPKVKKLAYRYAKPLDILSLDSNNDIPDLIDQVFIQTTDRNKFEDFCRVI- 235

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +D     I+FC  K  V  L   + + G++   IH +I Q  R KI+ +F++  I
Sbjct: 236 ----DEDRPFMAIVFCRTKARVDKLELQMGQAGYNCKKIHSDISQTKREKIIKDFRDLKI 291

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q ++++DL++RGLDI  + H++N+D P R E+Y+HR+GR+GR G+ GKA ++V ++++  
Sbjct: 292 QFLISTDLSSRGLDIGGITHIYNYDFPERVEDYVHRVGRSGRLGKEGKATSMVTEKNMTV 351

Query: 357 IDAIEKL 363
            + ++ L
Sbjct: 352 YEEVKNL 358


>gi|116514512|ref|YP_813418.1| superfamily II DNA/RNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093827|gb|ABJ58980.1| Superfamily II DNA and RNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 453

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 126/364 (34%), Positives = 203/364 (55%), Gaps = 9/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  ++   +   G++KPTP+Q K IP +L+   V   A TG+GKT ++++P+L  
Sbjct: 5   FTDTRLRSEIRQGLAKIGFIKPTPVQEKVIPAMLKGESVIVQAATGSGKTHAYLIPILNA 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKLE 120
           +++     R  + ++  P+RELA Q+     +   N   N+ +A L GG   + Q  + E
Sbjct: 65  IDED---ARYVQAIVTAPSRELADQLYRVARQLRDNSGLNIAIAHLAGGSDRDRQIARFE 121

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    ++I TPGR+LD  ++  LL++ ++  VIDEAD  LD+GF+  +  I + +P    
Sbjct: 122 QNKPQLVIATPGRLLDFADKKILLLDQVKNFVIDEADMTLDLGFLADVDKIAARLPKDVV 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSAT+  +L      ++  P+ I ++ P+  A TI++  +   ++  KK  + + L 
Sbjct: 182 MSAFSATIPVKLTNFLRKYMAKPEEIVIDNPAVIAPTIKNDLLDIGSKDRKKI-VYKLLT 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  +   ++F N K+ V  L   L KQG  V  IHG+I +R R + L   + G  Q +
Sbjct: 241 MGQPYL--ALVFANTKQMVDELADYLTKQGLKVAKIHGSITERERKRTLREVRAGQYQYV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASDLAARG+D+P V  V N+++P   E  IHRIGRTGR G  G A TLV +E++  + A
Sbjct: 299 VASDLAARGIDLPGVSLVINYEIPKDLEFIIHRIGRTGRNGLPGHAVTLVREEEMNRVGA 358

Query: 360 IEKL 363
           +E +
Sbjct: 359 LEYM 362


>gi|171687533|ref|XP_001908707.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943728|emb|CAP69380.1| unnamed protein product [Podospora anserina S mat+]
          Length = 396

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 213/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L  +++  +   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F    +++
Sbjct: 25  FDEMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATF---SISV 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    ++  + LIL PTRELA Q+       G   N+     IGG       K L  G
Sbjct: 82  LQKIDTSLKQCQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVRDDMKALGEG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 142 PQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 202 LSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 260

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A+
Sbjct: 261 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIAT 319

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 320 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 379

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 380 FYSTQIEEMPMNVADL 395


>gi|21555870|gb|AAM63951.1| Eukaryotic initiation factor 4A, putative [Arabidopsis thaliana]
          Length = 412

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 199/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 41  FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    + +    L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 101 LDFSLIQCQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAG 157

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 158 VHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 217

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 218 FSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLA 277

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++    L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 278 ITQ-----SVIFVNTRRKXDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 332

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V ++D + +  
Sbjct: 333 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFD 392

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     V+ L  +++ L
Sbjct: 393 IQKFYNVVVEELPSNVADL 411


>gi|313124261|ref|YP_004034520.1| ATP-dependent helicase (dead/deah box family) [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280824|gb|ADQ61543.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 453

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 126/364 (34%), Positives = 201/364 (55%), Gaps = 9/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  ++   +   G+ KPTP+Q K IP +L+   V   A TG+GKT ++++P+L  
Sbjct: 5   FTDTRLRSEIRQGLAKIGFAKPTPVQEKVIPAMLKGESVIVQAATGSGKTHAYLIPILNA 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL--LIGGIPFEAQNKKLE 120
           +++     R  + ++  P+RELA Q+     +   N  L +A+  L GG   + Q  + E
Sbjct: 65  IDED---ARYVQAIVTAPSRELADQLYRVARQLRDNSGLNIAIAHLAGGSDRDRQIARFE 121

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    ++I TPGR+LD  ++  LL++ ++  VIDEAD  LD+GF+  +  I + +P    
Sbjct: 122 QNKPQLVIATPGRLLDFADKKILLLDQVKNFVIDEADMTLDLGFLADVDKIAARLPKDVV 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSAT+  +L      ++  P+ I ++ P+  A TI++  +   ++  KK  + + L 
Sbjct: 182 MSAFSATIPVKLTNFLRKYMAKPEEIVIDNPAVIAPTIKNDLLDIGSKDRKKI-VYKLLT 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  +   ++F N K+ V  L   L KQG  V  IHG I +R R + L   + G  Q +
Sbjct: 241 MGQPYL--ALVFANTKQMVDELADYLTKQGLKVAKIHGGITERERKRTLREVRAGQYQFV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASDLAARG+D+P V  V N+++P   E  IHRIGRTGR G  G A TLV +E++  + A
Sbjct: 299 VASDLAARGIDLPGVSLVINYEIPKELEFIIHRIGRTGRNGLPGHAVTLVREEEMNRVGA 358

Query: 360 IEKL 363
           +E +
Sbjct: 359 LEHM 362


>gi|67527053|gb|AAY68322.1| putative cold-shock dead-box protein A [uncultured marine bacterium
           66A03]
          Length = 659

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 193/342 (56%), Gaps = 6/342 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA---RVRMPRTL 76
            Y+  TP+Q   + +     D+   AQTG+GKT +F + + T L   +    R ++P  +
Sbjct: 19  SYITLTPVQEAVLKIEDSNSDLLVSAQTGSGKTLAFGISIATTLLAEKMEFDRPKIPLAI 78

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           I+ PTRELA QV    E          A  +GG+   A+ + LE GA +++ TPGR+ DH
Sbjct: 79  IIAPTRELALQVRKELEWLYVRTKAQFASCVGGMDPRAERRTLESGAHIVVGTPGRLRDH 138

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
             RG L +++I+ +V+DEAD MLDMGF   +  I    P  R+TLLFSAT+  ++ K+++
Sbjct: 139 IERGVLRLSDIKAVVLDEADEMLDMGFREDLTFILGKAPVERRTLLFSATVPTQIVKLAK 198

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
            + ++  RI V++  S  + ++  + A   Q S +   +  LL+  D +   I+FCN + 
Sbjct: 199 TYQKDSVRISVSSKKS--QHLDISYHAIKIQPSDRDKAVINLLRYHD-VSGAIVFCNTRA 255

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
            V +L   L  +GFSV A+ G + Q+ R   L + + G   + VA+D+AARG+D+P++  
Sbjct: 256 AVTHLASRLTNRGFSVVALSGELSQKERNFALQSMRAGKANVCVATDVAARGIDLPNLEL 315

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           V + D+P   E  +HR GRTGRAGR G +  L+   + K ++
Sbjct: 316 VIHADLPQSNEAMLHRSGRTGRAGRKGVSVVLIPYRNFKKVE 357


>gi|268568362|ref|XP_002640231.1| Hypothetical protein CBG12746 [Caenorhabditis briggsae]
 gi|187029335|emb|CAP31678.1| hypothetical protein CBG_12746 [Caenorhabditis briggsae AF16]
          Length = 631

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 128/344 (37%), Positives = 188/344 (54%), Gaps = 15/344 (4%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-----PR 74
           G V PT IQI+ IP+ L   D+ GIA TG+GKT +FVLP++    +   ++       P 
Sbjct: 210 GIVTPTAIQIQGIPVALCGRDMIGIASTGSGKTMTFVLPLIMFCIEQEVKLPFMRNEGPF 269

Query: 75  TLILEPTRELAAQVADNFEKYGKNY------NLTVALLIGGIPFEAQNKKLERGADVLIC 128
            LI+ P+RELA Q+ D   +  +         L   L IGG+P   Q K   +G  +++ 
Sbjct: 270 GLIIVPSRELARQIYDLIIEMSEAIAKAGFPELRAGLCIGGVPIGEQAKDFRQGIHIVVA 329

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR+ D   +  + +     LV+DEADRMLDMGF   I++I       RQTLLFSATM 
Sbjct: 330 TPGRLSDMLTKKIINLEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKSQRQTLLFSATMP 389

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
            ++Q  +++ L  P  I VN   + A ++       + +   K   + + LQ   T    
Sbjct: 390 KKIQFFAKSALVKP--IVVNVGRAGAASLNVLQELEFVRSENKLVRVLECLQK--TSPKV 445

Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           +IF  +K +V N+   L  +G  V +IHG  DQ  R   +  F++    ++VA+D+A++G
Sbjct: 446 LIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVLVATDVASKG 505

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           LD   + HV NFD+P   ENY+HRIGRTGR+GR G A T + K+
Sbjct: 506 LDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFINKK 549


>gi|322495292|emb|CBZ30595.1| putative ATP-dependent DEAD-box RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 405

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 124/376 (32%), Positives = 203/376 (53%), Gaps = 8/376 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +  L  ++   + + G+ KP+P+Q + IP+ LQ  DV   A+ GTGKTASFV+P  
Sbjct: 30  VNFEEYALRRELQMGIFEKGFEKPSPVQEEAIPVALQGKDVLARAKNGTGKTASFVIP-- 87

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
            +LEK   R    + L++ PTRELA Q A   ++ GK+   L V +  GG        +L
Sbjct: 88  -VLEKVDTRESYVQALLMVPTRELALQTAQVTKELGKHIPGLEVMVTTGGTTLRDDILRL 146

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LD  ++  + +++  ILV+DEAD++L   F+  I ++ + +P   Q
Sbjct: 147 TSKVHILVATPGRVLDLASKKAVDLSHCHILVLDEADKLLSQEFMEIIDDLYTYLPSQLQ 206

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           ++LFSAT    ++  +E  L NP  I +    +     ++     + +  +K   L  L 
Sbjct: 207 SMLFSATFPVTVKTFAERHLHNPYEINLMDELTLKGVTQY---YAFVEERQKIHCLNTLF 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++  +   IIFCN    V  L   + + G+S   IH  + Q+ R ++  +F+EG  + +
Sbjct: 264 -NKLQINQSIIFCNSVNRVELLAKKITQLGYSCYYIHARMQQQHRNRVFHDFREGHCRNL 322

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A   V  +D  ++  
Sbjct: 323 VCSDLITRGIDIQAVNVVINFDFPKYAETYLHRIGRSGRFGHLGVAINFVTYDDRYNVYR 382

Query: 360 IEKLIEKKVDWLNGDL 375
           IE+ ++ ++  +  D+
Sbjct: 383 IEQELDTEIKPIPADI 398


>gi|219120540|ref|XP_002181006.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407722|gb|EEC47658.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 462

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 129/367 (35%), Positives = 203/367 (55%), Gaps = 35/367 (9%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV------RMPR 74
           + +P+PIQ + IP+ LQR D+ GIA+TG+GKT +F +P+   L    +RV        P 
Sbjct: 59  FKEPSPIQRQAIPIGLQRRDLIGIAETGSGKTVAFGVPLCHYLLNLPSRVLESVADAGPL 118

Query: 75  TLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
            L++ PTRELA Q+   F+K   +   +    ++GG   + Q ++L RG  +++ TPGRI
Sbjct: 119 ALVMAPTRELALQIDGEFQKLLSRQRLIRTVGIVGGQQIQQQAQELRRGVHIVVGTPGRI 178

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-------------------- 173
            +  +   +++N    +V+DEADRM+DMGF P I+ I                       
Sbjct: 179 NECIDMAYMVLNQCCYIVLDEADRMIDMGFAPQIETILDACGGSLKSENEAETYQQEKED 238

Query: 174 -----VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
                V   R T +FSATM  E++++++ +L++P  + V    S         +   A  
Sbjct: 239 LQKADVARHRLTAMFSATMPPEVERIAKRYLRHPAIVSVGDKDSGKNARIEQRIMFLASV 298

Query: 229 SKKCALLQQLLQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
           S+K  +L++ LQ +  ++  II F N+KK+   +   +E+ G +   +HG   Q  R + 
Sbjct: 299 SQKEKVLREQLQDRRFLREKIIVFVNEKKHAEGVGRMVERSGRACVVLHGGKTQEQREEN 358

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA-ENYIHRIGRTGRAGRHGKAF 346
           L  F+ G + ++VA+D+A RGLDIPDV HV N+D+P R+ ENY HRIGRTGRAG+ G A 
Sbjct: 359 LETFRRGNV-VLVATDVAGRGLDIPDVAHVINYDLPTRSIENYTHRIGRTGRAGKEGVAT 417

Query: 347 TLVAKED 353
           + +  ED
Sbjct: 418 SFITDED 424


>gi|308810851|ref|XP_003082734.1| putative ethylene-responsive RNA helicase (ISS) [Ostreococcus
           tauri]
 gi|116061203|emb|CAL56591.1| putative ethylene-responsive RNA helicase (ISS) [Ostreococcus
           tauri]
          Length = 682

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 191/369 (51%), Gaps = 17/369 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +      V   +L   +  P+  Q    P  L   DV  +A+TG+GKT ++VLP +
Sbjct: 60  LTFTEASFPSYVTEDLLREKFEAPSAAQSLAWPSALSGRDVVAVAETGSGKTLAYVLPAI 119

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                  +L  G      P  L+L PTRELA Q+     KY  +  L  A + GG P   
Sbjct: 120 VHVNAQPVLAPGEG----PIALVLAPTRELACQIELEVAKYAASSQLKHACVYGGAPKGP 175

Query: 115 QNKKLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           Q K L+ G  ++ + TPGR++D   RG   +     +V+DEADRMLDMGF P I+ I S 
Sbjct: 176 QVKALKSGECEICVATPGRLIDFLERGVTNLRRTTFVVLDEADRMLDMGFEPQIRRIVSQ 235

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSST---AETIEHCFVATYAQYS 229
               RQTLLF+AT   E+++++   ++ NP    V+    +   ++ +E           
Sbjct: 236 TRPDRQTLLFTATWPVEVREIARTLVRNNPVEFRVSGAGDSLLASKNVEQIVHVMNGDEE 295

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            K   L + L+ +   +  ++F   K +V  L   L   G+    +HG+ +Q+ R  +LS
Sbjct: 296 DKYEKLIETLEREMDGERLLVFVETKASVDALTRKLRVGGWPALGLHGDKEQKERDWVLS 355

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA--ENYIHRIGRTGRAGRHGKAFT 347
            FK G+  +M+A+D+A+RGLD+  V  V N+D PNR   E Y+HRIGRTGRAGR GK+ T
Sbjct: 356 EFKSGSSPIMIATDVASRGLDVEGVKLVVNYDFPNRGGVEEYVHRIGRTGRAGRLGKSVT 415

Query: 348 LVAKEDIKH 356
                D +H
Sbjct: 416 FFTIRDGRH 424


>gi|227518643|ref|ZP_03948692.1| ATP-dependent RNA helicase [Enterococcus faecalis TX0104]
 gi|227553173|ref|ZP_03983222.1| ATP-dependent RNA helicase [Enterococcus faecalis HH22]
 gi|227073900|gb|EEI11863.1| ATP-dependent RNA helicase [Enterococcus faecalis TX0104]
 gi|227177699|gb|EEI58671.1| ATP-dependent RNA helicase [Enterococcus faecalis HH22]
 gi|315575567|gb|EFU87758.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
 gi|315579991|gb|EFU92182.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
          Length = 452

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 128/367 (34%), Positives = 207/367 (56%), Gaps = 15/367 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P +  A+ + G+ +PT +Q K IP++ +   V G +QTG+GKT +F+LP++  
Sbjct: 7   FKQFQFQPFINEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLM-- 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
            +K +  +   + +I  P+RELA Q+    ++  +     + V+  +GG   + Q  KL+
Sbjct: 65  -DKVKPTIDEVQIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKLK 123

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   V+I TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I   +P   Q
Sbjct: 124 HQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKLQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+ ++L+   + +L+NP    +   +  +ETI++  ++T  + S K  ++ QLL
Sbjct: 184 MLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNK--IIYQLL 241

Query: 240 QSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               T+ +    I+F N K+ V  +   L+ QG  V  IHG+I  R R +++   +    
Sbjct: 242 ----TIGHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDY 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VA+DLAARG+DI  V HV N +VP+  + +IHR+GRTGR G +G A TL +  D + 
Sbjct: 298 QYVVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEA 357

Query: 357 IDAIEKL 363
           I  IE+L
Sbjct: 358 ITQIEQL 364


>gi|146418894|ref|XP_001485412.1| hypothetical protein PGUG_03141 [Meyerozyma guilliermondii ATCC
           6260]
 gi|152013508|sp|A5DIP0|DHH1_PICGU RecName: Full=ATP-dependent RNA helicase DHH1
 gi|146390885|gb|EDK39043.1| hypothetical protein PGUG_03141 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 547

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 138/434 (31%), Positives = 220/434 (50%), Gaps = 22/434 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + GL  +++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTASF++P L  
Sbjct: 31  FEEFGLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPAL-- 88

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            ++ + ++   + LIL PTRELA Q +   +  GK+  L   +  GG        +L+  
Sbjct: 89  -QQVKTKLNKIQVLILVPTRELALQTSQVVKTLGKHLKLQCMVTTGGTLLRDDVMRLDEP 147

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +L+ TPGR+LD   R     +   + V+DEAD+ML   F   I+ I    P  RQ+LL
Sbjct: 148 VHILVGTPGRVLDLAARSIADFSECPMFVMDEADKMLSREFKGIIEQILEFFPKNRQSLL 207

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    ++   +  L  P  I +     T   I   +   + +  +K   L  L  S+
Sbjct: 208 FSATFPLAVKSFMDKHLNKPYEINLMD-ELTLRGISQFYA--FVEEKQKLHCLNTLF-SK 263

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   IIFCN    V  L   + + G+S    H  + Q++R K+   F++G+++ +V S
Sbjct: 264 LKINQAIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGSVRTLVCS 323

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE- 361
           DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A   +  +D K +  IE 
Sbjct: 324 DLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINFIHWDDRKSLFNIET 383

Query: 362 ------KLIEKKVD---WLNGDLSSLNPPLEKIDIAQHN-HARKNNPIPQK----STGFD 407
                 K I   +D   ++  D +S+  P +  ++ + N H+RK N    +    S GF 
Sbjct: 384 ELGTEIKPIPSDIDRSLYVTEDEASIPRPFKIDELPKGNEHSRKRNGYEYRGQPTSQGFP 443

Query: 408 RRKKNYSSQKSHIP 421
           ++    ++  + +P
Sbjct: 444 QQPPQANTGYNQVP 457


>gi|294889264|ref|XP_002772733.1| ATP-dependent RNA helicase DED1, putative [Perkinsus marinus ATCC
           50983]
 gi|239877266|gb|EER04549.1| ATP-dependent RNA helicase DED1, putative [Perkinsus marinus ATCC
           50983]
          Length = 622

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 130/383 (33%), Positives = 206/383 (53%), Gaps = 39/383 (10%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F D G ++  +V  +   G+ +PTP+Q  +IP +  R D+   AQTG+GKT ++++P + 
Sbjct: 208 FNDGGEVAAAIVENIKRCGFDRPTPVQKYSIPTLTTRRDLMSCAQTGSGKTGAYLIPAIH 267

Query: 62  IL------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            +            + GR R   P TLIL PTRELA+Q+ +   K+  N  +   ++ GG
Sbjct: 268 NMLADGPPDATSSGDYGR-RKAYPITLILSPTRELASQIHEEARKFCFNTGIRPVVVYGG 326

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q ++LERG D+L+ TPGR+ D   R ++ +  I++L+ DEADRMLDMGF P I+ 
Sbjct: 327 ADVRTQLRELERGCDILVATPGRLSDLMERFRVSLCQIKMLIFDEADRMLDMGFEPQIRR 386

Query: 170 ITSL--VPFT---RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           I     +P +   RQ+ +FSAT   E+Q+++ +FL++   + V    ST  +I+   +  
Sbjct: 387 IVEQEDMPSSRDGRQSAMFSATFPREIQQLARDFLKDYIYLTVGRVGSTHGSIKQ--IMR 444

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
           Y   + K   L ++L+ Q      ++F   K+    + + L +  +   +IHG+  Q  R
Sbjct: 445 YVDENSKLRDLYRVLEEQTEEGLTLVFVETKRKADEIENMLRRDRYPATSIHGDRSQWER 504

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR--------- 335
            + L  FK G + ++VA+D+AARGLDI  V  V N+D+PN  ++Y+HRIG          
Sbjct: 505 EEALKAFKSGELPILVATDVAARGLDISHVNLVINYDLPNNIDDYVHRIGSKMVTVLPLL 564

Query: 336 ---------TGRAGRHGKAFTLV 349
                    TGRAG  G A   V
Sbjct: 565 EMEEVFSSGTGRAGNLGTAIAFV 587


>gi|67483578|ref|XP_657009.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56474243|gb|EAL51623.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 384

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 121/376 (32%), Positives = 205/376 (54%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   GY KP+ IQ K I  + +  DV   +Q+GTGKTA+F + +L  
Sbjct: 14  FESMGLKDELLKGIYQQGYTKPSGIQQKGIVPITKGRDVIAQSQSGTGKTATFSIGILQN 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E  +  V++   +I+ PTRELA Q         +   + V   IGG   +   K +E+G
Sbjct: 74  VESNKREVQV---IIISPTRELAVQSERVISGLSQYMAIQVRGCIGGKSEKEDIKAIEKG 130

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGRI+    +  + + +I+ LVIDEAD ML+ GF+P I +I   +P  RQ +L
Sbjct: 131 CQVISGTPGRIMGLIKKRVINVRHIKTLVIDEADEMLNKGFMPIIYDIFKYLPIKRQIVL 190

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+T ++ ++    +  P  I +     T E I+  F+    +  K   L +  +   
Sbjct: 191 CSATLTPDVIEIGTKIMNKPIEILIKRDEVTVEEIKQYFIEMEGEEQKFDTLCE--IYDS 248

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN +K V  L  ++ K  F V ++H  + Q+ R  I++ F++G  ++++ +
Sbjct: 249 MTITQSVIFCNMRKKVDWLTENMMKANFPVISMHSEMPQQERDYIMNIFRKGEKRVLITT 308

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ ARG+D+  +  V N+D+P   E YIHRIGR+GR GR G A   V K +++ +  +E+
Sbjct: 309 DVWARGIDVTQISLVINYDMPLNREVYIHRIGRSGRFGRTGIAINFVLKNEMEELRDLER 368

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ L  + + L
Sbjct: 369 YYSTQINELPENFADL 384


>gi|325686939|gb|EGD28963.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK72]
          Length = 447

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 197/369 (53%), Gaps = 15/369 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L++    V+    +I  P+RELAAQ+   A     + +   + +A  IGG     Q  
Sbjct: 61  QMLDEEADTVQ---AVITAPSRELAAQIYQAARQLASFSEK-EIRMANYIGGTDKARQIG 116

Query: 118 KLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           KLE     ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P 
Sbjct: 117 KLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPK 176

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TIE+  ++T  +  K   + Q
Sbjct: 177 DLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGR-DKNAQIYQ 235

Query: 237 --QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             QLLQ    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K  
Sbjct: 236 ISQLLQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D 
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDD 351

Query: 355 KHIDAIEKL 363
             I  +EK+
Sbjct: 352 SDIRELEKM 360


>gi|313226956|emb|CBY22101.1| unnamed protein product [Oikopleura dioica]
          Length = 664

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 126/358 (35%), Positives = 192/358 (53%), Gaps = 15/358 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ +   ++ A+   G   PTPIQ++ IP      D+ GI+ TG+GKT SF +P++  
Sbjct: 212 FRDMKIPACLISALKRKGINIPTPIQMQGIPAAFTGRDMIGISFTGSGKTLSFSIPLIMA 271

Query: 63  -----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIP 111
                +E    R   P +L++ P+RELA Q     E    + +      L VA+ IGG  
Sbjct: 272 ALEQEIEMPFVRDEGPFSLVICPSRELAKQTGHELEYLADHLDAGGFSKLRVAVAIGGTA 331

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            +     +++G  VL+ TPGR++D   +G + +   + LV+DEADRM+DMGF   ++ I 
Sbjct: 332 VKETMDVVKKGVHVLVGTPGRLMDMLQKGMIHLETCKQLVLDEADRMVDMGFEEDVRFIL 391

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLL+SATM  +++  +++ L +P  + V    + +  I       Y     K
Sbjct: 392 SYFKSQRQTLLYSATMPMKIKDFAKSALVDPLTVNVGRAGAASLNIRQDI--EYVLDEAK 449

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              + Q+LQ   T    +IF  +K+ V  +   L  +G    AIHG  DQ  RM+    F
Sbjct: 450 VVTVLQMLQK--TSPPVLIFAERKRAVDKVHEYLLLKGVECAAIHGGKDQEDRMEACRQF 507

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           + G   ++VA+D+A++GLD P++ HV N+D+P   ENYIHRIGRTGR    G A T V
Sbjct: 508 RGGEKDVLVATDIASKGLDFPEIEHVINYDMPEDIENYIHRIGRTGRGNHQGVATTFV 565


>gi|110802751|ref|YP_698816.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens SM101]
 gi|110683252|gb|ABG86622.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens SM101]
          Length = 405

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 122/371 (32%), Positives = 208/371 (56%), Gaps = 8/371 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           MD F  LGLS +V+ +++  G  +PT IQ K IP +L   +V G A+TGTGKT +++LP+
Sbjct: 1   MDKFLKLGLSEEVLKSLVGLGIEEPTDIQEKAIPEILNGKNVIGKAETGTGKTLAYLLPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVAD--NFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +  ++  +  ++    +IL PT EL  Q+ +  N  K G    +T   L+G    + Q +
Sbjct: 61  IEKIDDSKNEMQ---AIILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQME 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+    +L+ T GRIL+  N+ K+  N I+ +VIDE D++LD   I  ++++    P  
Sbjct: 118 KLKNKPHILVGTTGRILELINKKKITTNTIKTIVIDEGDKLLDFINIKDVKSVVKSCPRD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSATM ++  + ++  +   + I+    +   E IEH +     +   K   L++
Sbjct: 178 TQKLIFSATMNEKALENADELIGTSELIQAKAANKVNENIEHGYFQ--VELRDKIDFLRK 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ +    K  I+F N   NV N+   L+       ++HG+ ++  R K L +F+ G  +
Sbjct: 236 LIHAIGDEKKIIVFINNSYNVHNVIQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAK 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ SD++ARGLDI    H+ N D+P  ++NY+HR+GR GRAG  G A++L   ++ K I
Sbjct: 296 VLITSDVSARGLDIKGATHIVNLDIPMNSQNYLHRVGRVGRAGEKGFAYSLADYKEEKII 355

Query: 358 DAIEKLIEKKV 368
              E+ ++ K+
Sbjct: 356 VKCERQLKIKI 366


>gi|224153793|ref|XP_002337398.1| predicted protein [Populus trichocarpa]
 gi|222838972|gb|EEE77323.1| predicted protein [Populus trichocarpa]
          Length = 390

 Score =  213 bits (541), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 199/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 19  FDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G  + +    L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 79  LDYGLVQCQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAG 135

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 136 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGV 195

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 196 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLA 255

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 256 ITQ-----SVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 310

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V  +D + +  
Sbjct: 311 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTSDDDRMLFD 370

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     V+ L  +++ L
Sbjct: 371 IQKFYNVVVEELPSNVADL 389


>gi|225678019|gb|EEH16303.1| ATP-dependent RNA helicase dbp3 [Paracoccidioides brasiliensis
           Pb03]
          Length = 486

 Score =  213 bits (541), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 128/343 (37%), Positives = 195/343 (56%), Gaps = 13/343 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILE--KGRARVRMPRTLI 77
           + KPT IQ  + P +    DV G+A+TG+GKT +F +P +  +LE    R+  R+   +I
Sbjct: 90  FSKPTSIQSVSWPFLFAGRDVIGVAETGSGKTLAFGVPCIRKVLEINGSRSSSRIS-AVI 148

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           + PTRELA Q+ D   K+  N N+ +A + GG   + Q + L++ A V++ T GR+ D  
Sbjct: 149 ITPTRELATQIYDQLIKFTPN-NVGIACIYGGASKDDQRRALKK-ASVVVATTGRLKDFQ 206

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQTLLFSATMTDELQKVS 195
               L ++ ++ LV+DEADRMLD GF   I++I   +P +  RQT++F+AT    ++K++
Sbjct: 207 GDESLRLDKVKYLVLDEADRMLDKGFEQDIKDIVGAMPSSKKRQTVMFTATWPISVRKLA 266

Query: 196 ENFLQNPKRIEVNTPSST--AETIEHCFVATYAQYSKK---CALLQQLLQSQDTMKNGII 250
             F+++   I +   SS   A T     V       K+    +LL Q  + ++ M   ++
Sbjct: 267 ATFMKDHVTITIGDLSSDIRANTRIKQIVEVLKPEDKEHRLLSLLNQYQRGKNAMDKVLV 326

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           FC  KK    +   +  +GF V  IHG+++Q  R K L  FK G + L+VA+D+AARGLD
Sbjct: 327 FCLYKKEATRIERFIRSKGFKVAGIHGDMNQTERFKSLDAFKSGAVPLLVATDVAARGLD 386

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           IP V  V N   P   E+Y+HRIGRTGRAG  G A T+  + D
Sbjct: 387 IPAVRLVLNVTFPLTVEDYVHRIGRTGRAGADGLAITMFTEND 429


>gi|115704798|ref|XP_780056.2| PREDICTED: similar to Ddx10 protein [Strongylocentrotus purpuratus]
 gi|115951003|ref|XP_001192050.1| PREDICTED: similar to Ddx10 protein [Strongylocentrotus purpuratus]
          Length = 867

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 127/355 (35%), Positives = 197/355 (55%), Gaps = 14/355 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS + + A+ +AGY  PT IQ   I L LQ HDV G A+TG+GKT +F++P+L  
Sbjct: 64  FSDFPLSKRTLSALEEAGYKVPTEIQRGAIGLSLQGHDVLGAAKTGSGKTLAFLIPILEC 123

Query: 63  LEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L +    V  P     L++ PTRELA Q  +   K G N++ +  L+IGG   + + +++
Sbjct: 124 LYRNSWSV--PDGLGALVISPTRELAYQTFEVLCKVGANHDFSAGLIIGGKDLKTEMERI 181

Query: 120 ERGADVLICTPGRILDHFNRGKLLMN-NIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +  +V++CTPGR+L H +      + N++ILV+DEADR+LD+GF   I  I   +P  R
Sbjct: 182 PK-TNVVVCTPGRLLQHMDETACFESLNLKILVLDEADRILDLGFQRTIDAILDHLPAER 240

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYSKKCALLQ 236
           QTLLFSAT T  ++ ++   L  PK + V+     ST   +E  ++    +  +K  +L 
Sbjct: 241 QTLLFSATQTKSVRDLARLSLLEPKYVAVHEHHTHSTPVQLEQSYIV--CELEQKLDVLY 298

Query: 237 QLLQSQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             +++    K  +    C Q K    +   L   G SV A++G++ Q  RM +   F   
Sbjct: 299 SFIKAHMKQKTLVFMSSCKQVKYTFEVLCKLNP-GVSVMALYGSMHQLRRMAVYEEFCVR 357

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
              +++A+D+AARGLD P V  V   D P  +  YIHR+GRT R  + G+A  ++
Sbjct: 358 ESAVLLATDIAARGLDFPAVNWVVQLDCPEDSSTYIHRVGRTARYEKDGEALLVL 412


>gi|67423403|dbj|BAD99522.1| VASA RNA helicase [Daphnia magna]
          Length = 775

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 138/420 (32%), Positives = 222/420 (52%), Gaps = 26/420 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + GL P ++  + ++GY+KPTP+Q  +I ++L + D+   A TG+GKTA++++P++ I
Sbjct: 345 FEEAGLRPLLLQNIKNSGYIKPTPVQKASIAVILAKRDLIACAVTGSGKTAAYLVPVMNI 404

Query: 63  L-EKGRAR-----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           L E+G A      ++ P  +I+ PTRELA Q+     K+  N  L   ++ GG     Q 
Sbjct: 405 LLEQGVAGASHGMLQKPEVVIVAPTRELAIQIHREACKFSYNSVLKSVIIYGGTVVNHQR 464

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ---NITSL 173
             L+ G ++L+ T GR+ D  +RG      ++ L++DEADRMLDMGF P I+   N  ++
Sbjct: 465 SNLQAGCNILVATAGRLKDFLDRGIFDFTAVKFLILDEADRMLDMGFGPDIEKMVNHPTM 524

Query: 174 VP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-- 230
            P   R+  +FSAT  DE+Q ++  ++++   +       T   +E  F     Q SK  
Sbjct: 525 PPKGIRRVCMFSATFPDEVQALAATYMEDYIFVTTGIVGGTNPDVEQLFF----QCSKRD 580

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K   L ++LQ     K  I+F + KK    +   L        +IHG+  Q  R + L +
Sbjct: 581 KRTKLMEVLQDLGDAKT-IVFVDSKKTADFVAAFLCNNNLQSTSIHGDRLQSQREQALRD 639

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+++AARGLDI  V +V N+D+P   E Y+HR+GRTGR G  GK+ +   
Sbjct: 640 FKNGVRNILVATNVAARGLDIAGVNYVVNYDLPTDIEEYVHRVGRTGRVGNIGKSISFFD 699

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           +E D  ++     L+ K     N D+    PP  +  ++  +    +   P    GF  R
Sbjct: 700 EEKDGPNVGKFVSLLTKS----NADV----PPFMQAMVSGVSGMGYDFGAPSSHGGFASR 751


>gi|281490952|ref|YP_003352932.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis
           subsp. lactis KF147]
 gi|281374710|gb|ADA64230.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus
           lactis subsp. lactis KF147]
          Length = 446

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 197/365 (53%), Gaps = 8/365 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +   + +  + KPT +Q   IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTDFNFKDYINQTLENIKFEKPTEVQENLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
             ++     V+    +I  P+RELA Q+    +++ K N  L V+  +GG     Q KKL
Sbjct: 61  QKIDTDLDEVQ---AVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKL 117

Query: 120 ERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           E     V+I TPGRI D  N   L+++     V+DEAD  LDMGF+  +  I S      
Sbjct: 118 ESSQPHVVIGTPGRIHDLINSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRV 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+  +LQ   + +L NP   ++   +  ++TIE+  V+T    S    LL QL
Sbjct: 178 QMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKG--SSHNQLLLQL 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            ++ +     +IF N K  V ++ H L   G  V  IHG++  R R +I+++ K    Q 
Sbjct: 236 TKATNPYM-AMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQY 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  V H+ N ++P     ++HR+GR+GR G  G A TL +  D   I 
Sbjct: 295 VVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIR 354

Query: 359 AIEKL 363
            IEK+
Sbjct: 355 EIEKM 359


>gi|255555929|ref|XP_002519000.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223541987|gb|EEF43533.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 534

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 125/334 (37%), Positives = 184/334 (55%), Gaps = 6/334 (1%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILEK---GRARVRMPRTL 76
           +  P+PIQ    P +L   D  GIA+TG+GKT ++ +P ++ +L K     A    P  L
Sbjct: 134 FKNPSPIQAHAWPFLLDGRDFIGIAKTGSGKTLAYGIPAVMHVLSKRKGASANSVNPLCL 193

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           +L PTRELA Q++      G+   +    L GG     Q   L+ G D++I TPGR+ D 
Sbjct: 194 VLAPTRELADQISVVLRDAGEPCGVRSVCLYGGTSKGPQISSLKSGVDIVIATPGRLKDL 253

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
                  +  +  LV+DEADRMLDMGF   +++I S     RQ ++FSAT   ++  ++E
Sbjct: 254 IEMNICHLMEVSFLVLDEADRMLDMGFRQEVRSILSKTCSARQMIMFSATWPLDVHNLAE 313

Query: 197 NFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI-IFCNQ 254
            ++ +NP ++ V +  + A       V     + +   LL  L +   T +N + +F   
Sbjct: 314 EYMDRNPIKVVVGSEDTAANHDVMQIVEVLDDHLRDKRLLALLEKYHKTQRNRVLVFALY 373

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           +K    L   L + G++V +IHGN  Q  R K LS FK+G+  LMVA+D+AARGLD+PDV
Sbjct: 374 QKEAERLDGMLHRSGWNVVSIHGNKAQEQRTKALSLFKKGSCPLMVATDVAARGLDVPDV 433

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             V N+  P   E+Y+HRIGRTGRAG+ G A T 
Sbjct: 434 EVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTF 467


>gi|237831253|ref|XP_002364924.1| ATP-dependent helicase, putative [Toxoplasma gondii ME49]
 gi|211962588|gb|EEA97783.1| ATP-dependent helicase, putative [Toxoplasma gondii ME49]
 gi|221487231|gb|EEE25477.1| ATP-dependent helicase, putative [Toxoplasma gondii GT1]
 gi|221506914|gb|EEE32531.1| ATP-dependent helicase, putative [Toxoplasma gondii VEG]
          Length = 395

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 124/376 (32%), Positives = 202/376 (53%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G    ++  +   G+ +P+ +Q + I  +++  DV   +Q+GTGKT  F L  L  
Sbjct: 24  FDAMGFKEDLLRGIYAYGFERPSAVQQRAIVPIMKGRDVIVQSQSGTGKTCVFCLGCLQC 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    +VR P+ LIL PTRELA Q        G   ++ V   IGG       + LE G
Sbjct: 84  ID---PKVRDPQALILSPTRELAEQSQKVCLALGDYMSVQVHCCIGGKRVGDDIRALEAG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+     +      +I++LV+DEAD ML+ GF   + +I   +P + Q +L
Sbjct: 141 VHIVSGTPGRVFHMIAQRHFSTRHIKLLVLDEADEMLNRGFKEQVYDIYRYLPPSTQVVL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  E+ +++  F+ +P R+ V     T E I+  FVA   +  K   L    L   
Sbjct: 201 VSATLPHEVLEMTTKFMDDPFRVLVKRDELTLEGIKQFFVAVEREQWKFDTLTD--LYDT 258

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN K  V  L   +++  F+V  +HG++ Q+ R +I+  F+ G  ++++A+
Sbjct: 259 LTITQAVIFCNTKAKVEWLAQKMKEANFTVSRMHGDMPQQERDEIMRQFRGGQSRVLIAT 318

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+  RGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE+
Sbjct: 319 DVWGRGLDVQQVSLVINYDLPNSRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRDIEQ 378

Query: 363 LIEKKVDWLNGDLSSL 378
               ++D +  +++ L
Sbjct: 379 YYATQIDEMPMNVADL 394


>gi|171909846|ref|ZP_02925316.1| DEAD/DEAH box helicase domain protein [Verrucomicrobium spinosum
           DSM 4136]
          Length = 377

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 126/366 (34%), Positives = 201/366 (54%), Gaps = 10/366 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML- 60
           F DLG+S  +V  + + G  KPT IQ +TIP VL  R D+   AQTGTGKTA+F LPML 
Sbjct: 4   FQDLGISEALVQGLEELGITKPTAIQQQTIPHVLAHRGDLIAQAQTGTGKTAAFGLPMLE 63

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNK 117
             I    +A+      LI+ PTRELA Q+     K+ K+    + V  + GG   + Q  
Sbjct: 64  RIIPHAAKAKAGQIDGLIVAPTRELAKQIGKQLFKFTKHVPDKIFVETITGGDDMDLQIS 123

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L R   +++ TPGR++D   R  L ++ +  LV+DEAD ML +GF   ++    L   +
Sbjct: 124 RLRRPTHIVVGTPGRLMDLVQREALNLSKVRYLVLDEADEMLSLGFKKELEQFFQLTAKS 183

Query: 178 RQ-TLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
           R+ T LFSAT+ + +Q++ E +++    RI ++        I H ++      ++K   +
Sbjct: 184 RKNTWLFSATIPEGIQELIEGYMEPEAHRITIDKAHVVNRDITHRYI--ICDRTEKLDRI 241

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            + L+ + +   G+IFC      +NL   L  + FSV  +HG++ Q  R K++  FK+  
Sbjct: 242 SEFLEDR-SEDRGVIFCRTIAGSINLAKELGTRNFSVGVLHGDLSQLERDKVMRAFKKER 300

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q +V +D++ARG+D+  +  V +  +P + E Y HR GRTGRAGR G +   +  ++  
Sbjct: 301 LQYLVTTDVSARGIDVVGLAFVIHHQLPEQTEYYTHRSGRTGRAGRKGLSLAFIEPKEKS 360

Query: 356 HIDAIE 361
            I  +E
Sbjct: 361 AITRLE 366


>gi|324991997|gb|EGC23919.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK405]
          Length = 447

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 197/369 (53%), Gaps = 15/369 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +++ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALKDLNFLEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L++    V+    +I  P+RELAAQ+   A     + +   + VA  +GG     Q  
Sbjct: 61  QMLDEEADSVQ---AVITAPSRELAAQIYQAARQLASFSEK-EIRVANYVGGTDKARQIG 116

Query: 118 KLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           KLE     ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P 
Sbjct: 117 KLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPK 176

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TIE+  ++T  +  K   + Q
Sbjct: 177 DLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGR-DKNAQIYQ 235

Query: 237 --QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             QLLQ    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K  
Sbjct: 236 ISQLLQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D 
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDD 351

Query: 355 KHIDAIEKL 363
             I  +EK+
Sbjct: 352 SDIRELEKM 360


>gi|226287504|gb|EEH43017.1| ATP-dependent RNA helicase DBP3 [Paracoccidioides brasiliensis
           Pb18]
          Length = 486

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 128/343 (37%), Positives = 195/343 (56%), Gaps = 13/343 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILE--KGRARVRMPRTLI 77
           + KPT IQ  + P +    DV G+A+TG+GKT +F +P +  +LE    R+  R+   +I
Sbjct: 90  FSKPTSIQSVSWPFLFAGRDVIGVAETGSGKTLAFGVPCIRKVLEINGSRSSSRIS-AVI 148

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           + PTRELA Q+ D   K+  N N+ +A + GG   + Q + L++ A V++ T GR+ D  
Sbjct: 149 ITPTRELATQIYDQLIKFTPN-NVGIACIYGGASKDDQRRALKK-ASVVVATTGRLKDFQ 206

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQTLLFSATMTDELQKVS 195
               L ++ ++ LV+DEADRMLD GF   I++I   +P +  RQT++F+AT    ++K++
Sbjct: 207 GDESLRLDKVKYLVLDEADRMLDKGFEQDIKDIVDAMPSSKKRQTVMFTATWPISVRKLA 266

Query: 196 ENFLQNPKRIEVNTPSST--AETIEHCFVATYAQYSKK---CALLQQLLQSQDTMKNGII 250
             F+++   I +   SS   A T     V       K+    +LL Q  + ++ M   ++
Sbjct: 267 ATFMKDHVTITIGDLSSDIRANTRIKQIVEVLKPEDKEHRLLSLLNQYQRGKNAMDKVLV 326

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           FC  KK    +   +  +GF V  IHG+++Q  R K L  FK G + L+VA+D+AARGLD
Sbjct: 327 FCLYKKEATRIERLIRSKGFKVAGIHGDMNQTERFKSLDAFKSGAVPLLVATDVAARGLD 386

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           IP V  V N   P   E+Y+HRIGRTGRAG  G A T+  + D
Sbjct: 387 IPAVRLVLNVTFPLTVEDYVHRIGRTGRAGADGLAITMFTEND 429


>gi|46581491|ref|YP_012299.1| DEAD-box ATP dependent DNA helicase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601341|ref|YP_965741.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           vulgaris DP4]
 gi|46450913|gb|AAS97559.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120561570|gb|ABM27314.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4]
 gi|311235140|gb|ADP87994.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1]
          Length = 577

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 122/348 (35%), Positives = 192/348 (55%), Gaps = 9/348 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL  +P++  A + AG+    P+Q   +P +    D+   ++TG+GKT +F+LP+L  
Sbjct: 41  FADL--APRLQEACIRAGWQSLMPVQAHALPYLFDGRDLMVQSRTGSGKTGAFLLPLLER 98

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A  +    L+L PTRELA QV        +   L VA + GG+ +  QN  L  G
Sbjct: 99  LDPAEASTQ---ALVLVPTRELALQVEHEARTLFEGTGLRVAAVYGGVGYGKQNDALREG 155

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR-QTL 181
           A  ++ TPGR+LDH  R  + ++ +  L  DEADRML +GF P ++ I   +P  R  T 
Sbjct: 156 AHFVVGTPGRVLDHLLRRTMQLDRLRALTFDEADRMLSIGFYPDMKEIQRYLPKRRIATC 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +  ++  FL+ P+ + ++         +H F  +     K  AL++ LL+ 
Sbjct: 216 LFSATYPPHVLNLAGEFLREPQMLSLSHSQVHVAQTQHMFCESKP-MDKDRALIR-LLEI 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++   + IIFCN K NV  +   L+  G++   +  ++ Q  R ++L   +   ++ +VA
Sbjct: 274 ENP-SSAIIFCNTKANVHYITAVLQGFGYNADELSADLSQSKREQVLERLRNNEVRFLVA 332

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +D+AARG+DIP + HV  ++ P   E+YIHR GRTGRAG  G   +LV
Sbjct: 333 TDVAARGIDIPALSHVILYEPPEDRESYIHRAGRTGRAGAVGTVISLV 380


>gi|219683483|ref|YP_002469866.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|219621133|gb|ACL29290.1| possible ATP-dependent RNA helicase [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|289178816|gb|ADC86062.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 658

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 143/483 (29%), Positives = 237/483 (49%), Gaps = 57/483 (11%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+ P ++  +L A G     PIQ  T+P  L   DV G  QTG+GKT +F LP+++
Sbjct: 28  FGELGV-PGLLVRLLAADGKKTAFPIQQDTLPDSLAGRDVLGRGQTGSGKTLAFGLPLVS 86

Query: 62  IL-----------------EKGRARVRM----------PRTLILEPTRELAAQVADNFEK 94
            L                 +  R  +R           PR L+L PTRELA Q++D    
Sbjct: 87  RLSSMDRADDQDFPRDMDSQTLRKSLRFKRGVSKYMPHPRGLVLAPTRELANQISDVLTP 146

Query: 95  YGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDE 154
               Y + V  + GG+ +E Q + L+ GAD+++  PGR+ D   +  L + ++ I+V+DE
Sbjct: 147 LADAYGMAVTTVYGGVKYERQFRALDAGADIVVACPGRLEDLIEQQALTLADVRIVVLDE 206

Query: 155 ADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA 214
           AD M DMGF+P I+ I   +    Q +LFSAT+   + +V   FL +PK   V+  +S  
Sbjct: 207 ADEMADMGFLPPIKRILKQIRQDAQHMLFSATLDHGVDEVVSEFLHDPKVHSVDEVTSNV 266

Query: 215 ETI-EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
           +++  H F+ +    + K A++++L   +      I+F   K     L H+L + G    
Sbjct: 267 DSMTHHLFLVS---RNDKAAVVRELASGRGRR---ILFTRTKFQAKKLAHTLTQSGIPAA 320

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            +HGN+ Q  R + L  F+ G + ++VA+D+AARG+D+ +VG V   + P   +++ HR 
Sbjct: 321 ELHGNLSQHQRDRNLQVFESGQVNVLVATDVAARGIDVSNVGLVVQVEPPEDPKSFTHRS 380

Query: 334 GRTGRAGRHGKAFTLVA---KEDIKHI-----------------DAIEKLIEKKVDWLNG 373
           GRT RAG+ G   TL+    K  I+H+                   +++L+ +K D ++G
Sbjct: 381 GRTARAGQSGDVVTLMTPDQKRKIRHLFKEVDIKLKPVEVTPESPQVQELVGQKADPVHG 440

Query: 374 -DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQ 432
            +L  L     K +  +    R      ++      R    + +  H P +   +I+K Q
Sbjct: 441 WELPELERRPRKGNGGKSRRDRGRTNRDEERGNRSARGGRRTGKGEHRPTERERRIAKEQ 500

Query: 433 QDI 435
           Q+ 
Sbjct: 501 QEF 503


>gi|159117719|ref|XP_001709079.1| Translation initiation factor eIF-4A, putative [Giardia lamblia
           ATCC 50803]
 gi|157437194|gb|EDO81405.1| Translation initiation factor eIF-4A, putative [Giardia lamblia
           ATCC 50803]
          Length = 391

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 122/376 (32%), Positives = 202/376 (53%), Gaps = 7/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L P ++  +   GY  P+ IQ + I  ++   D    AQ+GTGKTA+F + ML  
Sbjct: 22  FDDMNLHPDLLFGIFTYGYKIPSAIQSQAIVPIISGKDTIAQAQSGTGKTAAFTIGMLQR 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++ G   ++ P+ +IL PTRELA Q     +  G    + VA  IGG   +  +    + 
Sbjct: 82  IDIG---LKSPQAIILSPTRELALQTLKVVDGIGSRLKVQVAQCIGGTQVD-DDIAAAQS 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+L    +  +  +N++++V+DEAD ML  GF   I +I   +    Q +L
Sbjct: 138 CHLIVATPGRLLSLLQKKYVTTSNVKMVVLDEADEMLSRGFTEQIVSIMKFMNADIQIVL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  E+ +++  F+++P  I V     T + I    V    Q + K  +++ + +  
Sbjct: 198 VSATLPPEILELTRQFMRDPVSILVKEAELTLDGIRQYVVEL--QDAWKTEVVEDIYKVL 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            +++ G+IFCN    V  L   L+  G ++  IH  +DQ  R KI+  F+ G  ++++A+
Sbjct: 256 -SVQQGVIFCNSIGRVKELAEKLKSAGHTLSCIHSELDQAERNKIMGEFRSGQTRILIAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           ++ ARG+D+ +V  V N+D+P   E Y+HRIGR+GR GR G A   V  +D + + AI  
Sbjct: 315 NIIARGIDVQNVSLVINYDIPREPETYLHRIGRSGRFGRKGVAINFVTDKDKQSMQAITD 374

Query: 363 LIEKKVDWLNGDLSSL 378
                 + L  DLSSL
Sbjct: 375 KFNVTTENLPEDLSSL 390


>gi|323452072|gb|EGB07947.1| hypothetical protein AURANDRAFT_26912 [Aureococcus anophagefferens]
          Length = 421

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 124/351 (35%), Positives = 191/351 (54%), Gaps = 21/351 (5%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK---GRARVRMPRTL 76
           G+  PTPIQ +  P++    DV  +A+TG+GKT  F +P L+  ++   GR + R P  L
Sbjct: 14  GWPGPTPIQAQCWPILCDDRDVVAVAETGSGKTLGFGMPALSKFKQALAGRGK-RQPAML 72

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           +L PTRELA Q  +  +++      T A+  GG+P   Q +++ + A  L+ TPGR+ D 
Sbjct: 73  VLAPTRELANQSFEVLQEFCGKVGATAAVAYGGVPKHEQKREIAKCA-ALVATPGRLNDF 131

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ-TLLFSATMTDELQKVS 195
              G + ++ +    +DEADRMLDMGF+  ++ I +      + T +FSAT   E+Q ++
Sbjct: 132 IQEGSVDLSKVSFFCLDEADRMLDMGFVQEVKKIAAACANPEKLTAMFSATWPTEVQNIA 191

Query: 196 ENFLQNPKRIEVNTPSSTA--------ETIEHCFVAT--YAQYSKKCALLQQLLQSQDTM 245
             FL+ P  + VN  +           + I+   + T   ++  +   +L+Q  QS  + 
Sbjct: 192 SEFLK-PDFVRVNVGAERGADEGPEANKRIDQSVIVTEERSRDGRLLEILKQRYQSGTSA 250

Query: 246 KNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   KK    L   L  + +   AIHG++ Q +R +   +FK G + L+VA
Sbjct: 251 SYATARLIVFGLYKKECARLETFLNSKKWKCVAIHGDMSQAARNQAFEDFKSGAVPLLVA 310

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +D+AARGLDIP+V  V NF  P   E+Y+HRIGRTGRAG+ G A TL   E
Sbjct: 311 TDVAARGLDIPNVELVVNFSFPLTIEDYVHRIGRTGRAGKTGTAITLFHGE 361


>gi|3097266|emb|CAA76677.1| translation initiation factor [Pisum sativum]
          Length = 407

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 197/379 (51%), Gaps = 10/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G+   ++  +   G+ KP+ IQ + +  ++Q  DV   AQ+GTGKT+   L +  +
Sbjct: 35  FEGMGIKEDLLRGIYAYGFEKPSAIQQRAVAPIIQGRDVIAQAQSGTGKTSMIALTVCQV 94

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + LI+ PTRELA Q        G + N+     IGG       +KLE G
Sbjct: 95  VDTS---VREVQALIVSPTRELATQTEKVILAIGDHINIQAHACIGGKSVGEDIRKLEHG 151

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DE+D ML  GF   I ++   +P   Q  L
Sbjct: 152 VHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCL 211

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            S T+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C +   L 
Sbjct: 212 ISRTLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCVIFMILS 271

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S   + +     N K+ V  L   +    F+V ++HG++ Q+ R  I+  F+ GT +++
Sbjct: 272 PSLKLLYS----VNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFRAGTTRVL 327

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +  
Sbjct: 328 ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRD 387

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  ++  L
Sbjct: 388 IEQYYSTQIDEMPMNIGDL 406


>gi|30022365|ref|NP_833996.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|29897922|gb|AAP11197.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
          Length = 436

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 125/378 (33%), Positives = 210/378 (55%), Gaps = 14/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L  
Sbjct: 6   FTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK----NYNLTVALLIGGIPFEAQNKK 118
           +   R  V++   +I  PTRELA Q+ +   K  K    +  +T   LIGG   +   +K
Sbjct: 66  INASREEVQL---VITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ- 237
           Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +  ++  K  L+ + 
Sbjct: 183 QMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPS--KHRNKIDLVHKM 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LLQ +  +   ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 241 LLQFKPYL--AVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+  P+  + ++HR+ RT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIQGISHVINYQPPSDLDFFVHRVARTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|242015175|ref|XP_002428249.1| ATP-dependent RNA helicase DDX54, putative [Pediculus humanus
           corporis]
 gi|212512810|gb|EEB15511.1| ATP-dependent RNA helicase DDX54, putative [Pediculus humanus
           corporis]
          Length = 723

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 202/371 (54%), Gaps = 3/371 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G S  V+  +   GY  PTPIQ K+IPL+LQ  DV  +A+TG+GKTA F+LPM   
Sbjct: 29  FQAFGFSFPVLKGIQKRGYKIPTPIQRKSIPLILQGRDVVAMARTGSGKTACFLLPMFEK 88

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L     + R+  R LIL PTRELA Q     ++ GK   L    ++GG   + Q   +  
Sbjct: 89  LINKTPKSRLGVRALILSPTRELALQTVKFIKELGKFTKLKALAILGGDSMDQQFGAIHE 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR L      +L + ++E +V DEADR+ +MGF   ++ I   +  +RQT+
Sbjct: 149 NPDIIVATPGRFLHICVEMELKLTSVEYVVFDEADRLFEMGFGEQLKEILDRLGVSRQTV 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L   ++  L NP  + ++  +   E ++  + +   ++ +K A L  LL  
Sbjct: 209 LFSATLPKLLVDFAKAGLVNPVLLRLDVETKIPEMLDLVYFSV--KHDEKLAALLCLLNL 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  +IF   K +V  +   LEK   S   I+ ++D  +R    + F+     +++ 
Sbjct: 267 LPKNTQTLIFVATKHHVEYIHKILEKANISSSYIYSDLDPTARKINAAKFQNKVCSVLIV 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP + +V N+  P + + ++HR+GR  RAGR G AF+LV  E+  +I  + 
Sbjct: 327 TDVAARGVDIPQLDYVINYHFPAKPKLFVHRVGRCARAGRTGTAFSLVCSEEFPYIIDLH 386

Query: 362 KLIEKKVDWLN 372
             + KK++ L+
Sbjct: 387 LFLGKKINLLD 397


>gi|29375944|ref|NP_815098.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis V583]
 gi|257419189|ref|ZP_05596183.1| helicase [Enterococcus faecalis T11]
 gi|29343406|gb|AAO81168.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis V583]
 gi|257161017|gb|EEU90977.1| helicase [Enterococcus faecalis T11]
          Length = 449

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 128/367 (34%), Positives = 207/367 (56%), Gaps = 15/367 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P +  A+ + G+ +PT +Q K IP++ +   V G +QTG+GKT +F+LP++  
Sbjct: 4   FKQFQFQPFINEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLM-- 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
            +K +  +   + +I  P+RELA Q+    ++  +     + V+  +GG   + Q  KL+
Sbjct: 62  -DKVKPTIDEVQIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKLK 120

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   V+I TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I   +P   Q
Sbjct: 121 HQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+ ++L+   + +L+NP    +   +  +ETI++  ++T  + S K  ++ QLL
Sbjct: 181 MLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNK--IIYQLL 238

Query: 240 QSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               T+ +    I+F N K+ V  +   L+ QG  V  IHG+I  R R +++   +    
Sbjct: 239 ----TIGHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDY 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VA+DLAARG+DI  V HV N +VP+  + +IHR+GRTGR G +G A TL +  D + 
Sbjct: 295 QYVVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEA 354

Query: 357 IDAIEKL 363
           I  IE+L
Sbjct: 355 ITQIEQL 361


>gi|123500450|ref|XP_001327863.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121910798|gb|EAY15640.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 478

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 129/383 (33%), Positives = 205/383 (53%), Gaps = 13/383 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ---RHDVCGIAQTGTGKTASFVLP 58
           DF  + L P ++  V   G+  P+ IQ   I  +     RH V   AQ+GTGKT +F + 
Sbjct: 92  DFDQMDLPPALLQGVYSYGFRAPSEIQAIAIGAIRDPSNRH-VIAQAQSGTGKTGAFSIG 150

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP--FEAQ 115
           +L+ ++  +   +  + L+L PTRELA Q+ + F++ G     L +A+ IGG     +AQ
Sbjct: 151 VLSKIDVSQ---KTTQALVLAPTRELATQIFNVFKEIGSRIPGLDIAIFIGGAQRVVDAQ 207

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            +       + ICTPGR LD    G L + N ++ V+DEAD+ML   FI  + +I    P
Sbjct: 208 ARAASH-PHICICTPGRALDLIVSGHLRVQNFKMAVLDEADQMLSDNFIEQVNDIMEYFP 266

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q LLFSAT++  +  +   F+ +P RI +     T E I+  +V      +K   LL
Sbjct: 267 EDVQILLFSATISQSIFHIMNTFMNDPFRILIKKEQLTLEGIKQFYVDVQETSNKFDCLL 326

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              +    +++  IIF N K  V  +   L++ GF V  IH  +DQ  R +I+ +F+ GT
Sbjct: 327 D--IYGSVSIQKAIIFANSKNAVDYISEQLQQHGFGVAPIHAGLDQLERDRIMRDFRTGT 384

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++++DL ARG+D+  V  V NF++P + E YIHRIGR+GR GR G A  +   ED+ 
Sbjct: 385 ARVLISTDLLARGIDVQQVTLVINFELPKKLEQYIHRIGRSGRYGRKGVAINICDHEDMN 444

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
            I+ ++      ++ L  D+  +
Sbjct: 445 VIEMLKNHYMTTINELPSDIERV 467


>gi|212007716|gb|ACJ22452.1| putative eukaryotic translation initiation factor 4A [Porphyra
           yezoensis]
          Length = 408

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 123/364 (33%), Positives = 197/364 (54%), Gaps = 12/364 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L  +++  +   G+ KP+ IQ + I  ++Q  D    AQ+G GKTA+F + +L  
Sbjct: 53  FDDMNLREELLRGIYAYGFEKPSAIQQRAIMPLIQNRDTIAQAQSGMGKTATFSIGVLQN 112

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + LIL PTRELA Q+    +      +++    IGG       +  +  
Sbjct: 113 IDTS---VRKVQALILAPTRELAQQIHKVVQTLSDFMSISCHACIGGTRVMEDVRVFQSE 169

Query: 123 A-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+ D   R  L   +I+   +DEAD ML  GF   I  I   +P T Q  
Sbjct: 170 TPHVVVGTPGRVFDMIQRRALDTGSIKAFCLDEADEMLSRGFKEQIYEIFQFMPATCQVG 229

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQL 238
           LFSATM D++ ++++ F+++P RI V     T E I+  +VA   +  K    C L + L
Sbjct: 230 LFSATMPDDVLEMTQKFMRDPIRILVKKDELTLEGIKQFYVAVEREDWKLETLCDLYETL 289

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                 +   II+ N ++ V  L   + ++ F+V ++HG++DQ+ R  I+  F+ G+ ++
Sbjct: 290 -----NITQSIIYTNTRRKVEWLVAKMNERDFTVSSLHGDMDQKDRDIIMREFRTGSTRV 344

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +DL ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   +  ED + + 
Sbjct: 345 LITTDLLARGIDVQQVSLVVNYDLPTNKENYIHRIGRSGRFGRKGVAINFITSEDARAMR 404

Query: 359 AIEK 362
            IE+
Sbjct: 405 EIEE 408


>gi|324503749|gb|ADY41623.1| ATP-dependent RNA helicase DDX54 [Ascaris suum]
          Length = 799

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 118/352 (33%), Positives = 193/352 (54%), Gaps = 3/352 (0%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LGL   V  A+   GY +PTPIQ K IPL++   DV  +++TG+GKTA+FV+PML  L+ 
Sbjct: 43  LGLDHAVFKAIEKKGYRQPTPIQRKAIPLIIDGKDVVAMSRTGSGKTAAFVVPMLQKLK- 101

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
            R  V   R L++ PTRELA Q     ++ G+   L  A L+GG   E Q   +    D+
Sbjct: 102 -RREVNGTRALLIAPTRELALQTFKFTKELGRFTGLRCAALVGGDSIEEQFGAIHEKPDI 160

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           +I TPGR+L       L +  ++ LV DEADR+ +MGF   +  I   +P  RQTLLFSA
Sbjct: 161 IIATPGRLLHLIIEMNLRLTTVQYLVFDEADRLFEMGFSEQLHEILKRLPDNRQTLLFSA 220

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           T+   L   ++  L +P  + ++     ++ +   F+ T     K  A L  +  +    
Sbjct: 221 TLPKMLVDFAKAGLTDPVLVRLDVDEKISDRLSMIFL-TCRTADKISAFLYLVRLAIANN 279

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
           +  I+FC   K+V  L    ++       ++  +D  +R   +  F+     L++ +D+A
Sbjct: 280 EMTIVFCATMKHVEYLAAVAQRAAIDCVVLYSQLDAAARKINIERFRSKQCLLLIVTDVA 339

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ARG+DIP + +  NF  P +A+ ++HR+GR  RAG+ GK+++L++ +++ ++
Sbjct: 340 ARGVDIPLLDNAINFHFPPKAKLFVHRVGRVARAGKSGKSYSLISADELPYL 391


>gi|15672392|ref|NP_266566.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723284|gb|AAK04508.1|AE006277_8 ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326405986|gb|ADZ63057.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis
           subsp. lactis CV56]
          Length = 446

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 197/365 (53%), Gaps = 8/365 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +   + +  + KPT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
             ++     V+    +I  P+RELA Q+    +++ K N  L V+  +GG     Q KKL
Sbjct: 61  QKIDTDLDEVQ---AVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKL 117

Query: 120 ERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           E     V+I TPGRI D      L+++     V+DEAD  LDMGF+  +  I S      
Sbjct: 118 ESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRV 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+  +LQ   + +L NP   ++   +  ++TIE+  V+T    S    LL QL
Sbjct: 178 QMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKG--SSHNQLLLQL 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            ++ +     +IF N K  V ++ H L   G  V  IHG++  R R +I+++ K    Q 
Sbjct: 236 TKATNPYM-AMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQY 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  V H+ N ++P     ++HR+GR+GR G  G A TL +  D   I 
Sbjct: 295 VVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIR 354

Query: 359 AIEKL 363
            IEK+
Sbjct: 355 EIEKM 359


>gi|117647206|ref|NP_001071115.1| probable ATP-dependent RNA helicase DDX4 [Rattus norvegicus]
 gi|2500526|sp|Q64060|DDX4_RAT RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog;
           Short=rVLG
 gi|806464|gb|AAB33364.1| vasa-like gene protein [Rattus sp.]
          Length = 713

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 131/383 (34%), Positives = 209/383 (54%), Gaps = 20/383 (5%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP+VL   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 288 IAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKE 347

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG  F    +++ +G ++L  T
Sbjct: 348 LQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSIRQIVQGCNILCAT 407

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  ++ LV+DEADRMLDMGF P ++ + S         RQTLLFSA
Sbjct: 408 PGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLLFSA 467

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   +     + K+  L++ L    D 
Sbjct: 468 TFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGPVFKKR-KLVEILRNIGD- 525

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 526 -ERPMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 584

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA--IEK 362
           AARGLDI +V HV NF++P+  + Y+HRIGRTGR G  G+A +    E   H+    ++ 
Sbjct: 585 AARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFDTESDNHLAQPLVKV 644

Query: 363 LIEKKVD---WLNG-DLSSLNPP 381
           L + + D   WL     SS  PP
Sbjct: 645 LSDAQQDVPAWLEEIAFSSYAPP 667


>gi|294633723|ref|ZP_06712281.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
 gi|292830365|gb|EFF88716.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
          Length = 498

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 135/435 (31%), Positives = 218/435 (50%), Gaps = 25/435 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +  +++ A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 71  FADLDMPRELLAALGSQGLTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 130

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +    A  R P  LIL PTRELA QV+D    Y ++  L +A ++GG+    Q   L  G
Sbjct: 131 VAGQPAAARQPLGLILVPTRELAQQVSDALAPYARSVKLRLATVVGGMSTGRQAGVLRSG 190

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D  +RG   ++ + + V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 191 AEVVVATPGRLKDLIDRGDCRLDQVCVTVLDEADQMADMGFMPQVTALLDQVRPGGQRML 250

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  ++ ++   +L +P    V+ P+    T+EH  +  +    K+ A  +  + ++
Sbjct: 251 FSATLDRDVDRLVRRYLSDPVVHSVDPPAGAVTTMEHHVLHVHG-ADKRAATTE--IAAR 307

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D     I+F + +  V  L   L   G    A+HG   Q  R + L+ FK G + ++VA+
Sbjct: 308 DGRV--IMFLDTEHAVDRLTEHLLSSGVRAAALHGGKTQPQRTRTLAQFKTGHVSVLVAT 365

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA---KEDIKHIDA 359
           ++AARG+ + ++  V N D P   ++Y+HR  RT RAG  G   TLV    +  +  + A
Sbjct: 366 NVAARGIHVDNLDLVVNVDPPTDHKDYLHRGDRTARAGEPGSVVTLVTPNQRRGMTRVMA 425

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI---------PQKSTGFDRRK 410
              +  +      G  +     L +I  AQ   A    P+         P+K     R +
Sbjct: 426 AAGITRQTTQVRAGAEA-----LHRITGAQ---APSGVPVVITAPVAGRPEKGGATPRSR 477

Query: 411 KNYSSQKSHIPLKES 425
           +   S    +P++ S
Sbjct: 478 RRTVSATPRVPVRRS 492


>gi|323449738|gb|EGB05624.1| hypothetical protein AURANDRAFT_2696 [Aureococcus anophagefferens]
          Length = 395

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 129/348 (37%), Positives = 183/348 (52%), Gaps = 27/348 (7%)

Query: 40  DVCGIAQTGTGKTASFVLPMLTILEKGR-----ARVRMPRTLILEPTRELAAQVADNFEK 94
           DV G+A+TG+GKT  F++P    L          +   PR L+L PTRELA Q+A+   K
Sbjct: 1   DVIGVAKTGSGKTLGFLVPAFKQLCGNNPGPMPGQPNAPRVLVLAPTRELATQIAEECVK 60

Query: 95  YGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDE 154
           +G    +      GG P   Q   L  GA V+I TPGR+ D    G + M+N+  LV DE
Sbjct: 61  FGGPLGIRSICCYGGSPKGPQLGALRSGAHVVIATPGRLNDFLEGGMVSMHNVNYLVFDE 120

Query: 155 ADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT----DELQKVSENFLQNPKRIEVNTP 210
           ADRMLDMGF P I+ I +  P  RQTL F+AT       E+++++  FL  P  I V   
Sbjct: 121 ADRMLDMGFEPQIRKIVARCPGDRQTLFFTATCCATWPKEVRRLASEFLAEPVIIYVGDT 180

Query: 211 SST----AETIEHCFVATYAQ----YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLC 262
           +       +  +  FV    Q    Y   C + ++   +   +   I+F N K+    +C
Sbjct: 181 TGALRVNKDVCQKIFVTRGPQEKDRYLADC-IRKETQAAAGGVARVIVFANAKR----MC 235

Query: 263 HSLEKQ-----GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
             LE+      G    AIHG+ DQ  R + L+ FK G   +++A+D+AARGLDI +V  V
Sbjct: 236 DQLERTLPRAVGVRCAAIHGDKDQMQRTQTLNAFKVGICPVLIATDVAARGLDIKEVKAV 295

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
             +D PN  E+Y+HRIGRTGRAG  G A+T   + D +    + KL++
Sbjct: 296 VCYDFPNNVEDYVHRIGRTGRAGAKGNAYTFFTQRDDRKAAQLVKLLD 343


>gi|115473551|ref|NP_001060374.1| Os07g0633500 [Oryza sativa Japonica Group]
 gi|75329662|sp|Q8L4E9|RH36_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 36
 gi|22093824|dbj|BAC07111.1| DEAD box protein-like [Oryza sativa Japonica Group]
 gi|22296386|dbj|BAC10155.1| DEAD box protein-like [Oryza sativa Japonica Group]
 gi|113611910|dbj|BAF22288.1| Os07g0633500 [Oryza sativa Japonica Group]
 gi|125601204|gb|EAZ40780.1| hypothetical protein OsJ_25257 [Oryza sativa Japonica Group]
          Length = 501

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 137/388 (35%), Positives = 208/388 (53%), Gaps = 9/388 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  +V      G   PT +Q + IP  L+  DV GIA+TG+GKTA+F LP+L  
Sbjct: 79  FAELGLSQWLVDVCDSLGMRVPTAVQRRCIPRALEGRDVLGIAETGSGKTAAFALPILHR 138

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    V     L L PTRELAAQ+A+ F   G    L     IGG     Q K L R 
Sbjct: 139 LGEDPYGVA---ALALAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDSLGQAKGLARR 195

Query: 123 ADVLICTPGRILDHFNRGKLL---MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             V++ TPGRI    N    L       + LV+DEADR+LD+ F   ++ I   +P  RQ
Sbjct: 196 PHVVVATPGRIATLINDDPDLAKVFARTKFLVLDEADRVLDINFEEDLRVIFGSLPKKRQ 255

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT++D L+ + E    N    E      T +T++  ++      +K+  L   L 
Sbjct: 256 TFLFSATISDNLRSLLELSGNNSYFFEAYEGFKTVDTLKQLYIHVPPD-AKELYLFYLLS 314

Query: 240 Q-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + ++D +++ I+F +  +    L   LE+ G    ++H +  Q  R+  L NFK   + +
Sbjct: 315 KMNEDNIRSVIVFVSTCRTCQYLDFLLEELGHPAVSLHSHKPQSRRLAALHNFKSSKVPV 374

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHI 357
           ++A+D+A+RGLDI  V  V N+DVP    +YIHR+GRT RA R G + + +  + DI+ +
Sbjct: 375 LLATDVASRGLDIQTVDLVINYDVPRYPRDYIHRVGRTARATRGGLSISFITTQRDIRLL 434

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
             IE ++ K++   +G++  +N    K+
Sbjct: 435 HEIEDVVGKQLGAYDGEMRDVNKDATKV 462


>gi|125559280|gb|EAZ04816.1| hypothetical protein OsI_26993 [Oryza sativa Indica Group]
          Length = 501

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 137/388 (35%), Positives = 208/388 (53%), Gaps = 9/388 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  +V      G   PT +Q + IP  L+  DV GIA+TG+GKTA+F LP+L  
Sbjct: 79  FAELGLSQWLVDVCDSLGMRVPTAVQRRCIPRALEGRDVLGIAETGSGKTAAFALPILHR 138

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    V     L L PTRELAAQ+A+ F   G    L     IGG     Q K L R 
Sbjct: 139 LGEDPYGVA---ALALAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDSLGQAKGLARR 195

Query: 123 ADVLICTPGRILDHFNRGKLL---MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             V++ TPGRI    N    L       + LV+DEADR+LD+ F   ++ I   +P  RQ
Sbjct: 196 PHVVVATPGRIATLINDDPDLAKVFARTKFLVLDEADRVLDINFEEDLRVIFGSLPKKRQ 255

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT++D L+ + E    N    E      T +T++  ++      +K+  L   L 
Sbjct: 256 TFLFSATISDNLRSLLELSGNNSYFFEAYEGFKTVDTLKQLYIHVPPD-AKELYLFYLLS 314

Query: 240 Q-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + ++D +++ I+F +  +    L   LE+ G    ++H +  Q  R+  L NFK   + +
Sbjct: 315 KMNEDNIRSVIVFVSTCRTCQYLDFLLEELGHPAVSLHSHKPQSRRLAALHNFKSSKVPV 374

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHI 357
           ++A+D+A+RGLDI  V  V N+DVP    +YIHR+GRT RA R G + + +  + DI+ +
Sbjct: 375 LLATDVASRGLDIQTVDLVINYDVPRYPRDYIHRVGRTARATRGGLSISFITTQRDIRLL 434

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
             IE ++ K++   +G++  +N    K+
Sbjct: 435 HEIEDVVGKQLGAYDGEMRDVNKDATKV 462


>gi|68063293|ref|XP_673656.1| ATP-dependent helicase [Plasmodium berghei strain ANKA]
 gi|56491666|emb|CAH95329.1| ATP-dependent helicase, putative [Plasmodium berghei]
          Length = 525

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 128/387 (33%), Positives = 196/387 (50%), Gaps = 32/387 (8%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           ++ K+V  +   G    T IQ K+   + + +D+ G ++TG+GKT +F LP++  L K  
Sbjct: 7   INQKIVDFLETKGIKYMTKIQSKSFMPIYEGNDIIGRSETGSGKTLAFALPLVEKLYKNM 66

Query: 68  ARV------------------------------RMPRTLILEPTRELAAQVADNFEKYGK 97
                                            + P  L+LEPTREL+ QV   F++  +
Sbjct: 67  ESKKKIIKNKSNEINSIQHLSEGHKNENTDSMDKYPYILVLEPTRELSKQVETTFKEISQ 126

Query: 98  NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
            YN  +  + GG  +  Q  KL +G  +L  TPGRI+DH  +  L + NI+ +V+DEAD 
Sbjct: 127 FYNFNIMSIYGGESYTYQENKLRKGIQILTGTPGRIIDHIEKKNLSLKNIKYVVLDEADE 186

Query: 158 MLDMGFIPYIQNITSLVPFT-RQTLLFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAE 215
           ML++GF   I+ I S +     Q LL+SAT    ++ +S  +L+NP  I+V NT + T++
Sbjct: 187 MLNLGFTHDIERILSYINIKDAQVLLYSATTPSWIKDISSKYLKNPIYIDVINTINKTSK 246

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
           TI+H  + T     +K  LL+ ++  +      IIF   K     LC        +   +
Sbjct: 247 TIQHIAIKTPYDIKEKAMLLEDIILVKSNGGQVIIFTRTKLEADILCSEGSFNYLTFSVL 306

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HGNI Q +R   +  F+ G  Q+++A+D+AARGLDI +V  V     P     YIHR GR
Sbjct: 307 HGNIAQSTREHTMQRFRSGMFQVLIATDIAARGLDISNVDLVIQCYPPTYPAIYIHRSGR 366

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           TGRA + G +  L + ED   +  IEK
Sbjct: 367 TGRANKKGMSIVLFSNEDKNDVIKIEK 393


>gi|213410166|ref|XP_002175853.1| translation initiation factor eIF4A [Schizosaccharomyces japonicus
           yFS275]
 gi|212003900|gb|EEB09560.1| translation initiation factor eIF4A [Schizosaccharomyces japonicus
           yFS275]
          Length = 392

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 211/379 (55%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+GL P+++  +   G+ +P+ IQ + I  +L   DV   AQ+GTGKTA+F    +++
Sbjct: 21  FDDMGLKPELLRGIYAYGFERPSAIQQRAIVPILGDRDVLAQAQSGTGKTATF---SISV 77

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    ++  + LIL PTRELA Q+       G   N+     IGG         L+ G
Sbjct: 78  LQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVREDMAALQAG 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + +++ V+DEAD ML  GF   I +I  L+P T Q +L
Sbjct: 138 VHVVVGTPGRVHDMIQRRALPTDAVKMFVLDEADEMLSRGFKDQIYDIFQLLPPTSQVVL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
            SATM  ++ +V+  F+++P RI V     T E I+  +VA   +  K    C L + + 
Sbjct: 198 LSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETI- 256

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   L ++ F+V ++HG++DQ  R  ++  F+ G+ +++
Sbjct: 257 ----TVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDILMHEFRTGSSRIL 312

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G +   V  ED++ +  
Sbjct: 313 ITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTSEDVRMMRE 372

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+     ++ +  +++ L
Sbjct: 373 IEQFYNTHIEEMPMNIADL 391


>gi|183601427|ref|ZP_02962797.1| possible ATP-dependent RNA helicase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|241191073|ref|YP_002968467.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196479|ref|YP_002970034.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183219033|gb|EDT89674.1| possible ATP-dependent RNA helicase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|240249465|gb|ACS46405.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240251033|gb|ACS47972.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295794062|gb|ADG33597.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 645

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 143/483 (29%), Positives = 237/483 (49%), Gaps = 57/483 (11%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F +LG+ P ++  +L A G     PIQ  T+P  L   DV G  QTG+GKT +F LP+++
Sbjct: 15  FGELGV-PGLLVRLLAADGKKTAFPIQQDTLPDSLAGRDVLGRGQTGSGKTLAFGLPLVS 73

Query: 62  IL-----------------EKGRARVRM----------PRTLILEPTRELAAQVADNFEK 94
            L                 +  R  +R           PR L+L PTRELA Q++D    
Sbjct: 74  RLSSMDRADDQDFPRDMDSQTLRKSLRFKRGVSKYMPHPRGLVLAPTRELANQISDVLTP 133

Query: 95  YGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDE 154
               Y + V  + GG+ +E Q + L+ GAD+++  PGR+ D   +  L + ++ I+V+DE
Sbjct: 134 LADAYGMAVTTVYGGVKYERQFRALDAGADIVVACPGRLEDLIEQQALTLADVRIVVLDE 193

Query: 155 ADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA 214
           AD M DMGF+P I+ I   +    Q +LFSAT+   + +V   FL +PK   V+  +S  
Sbjct: 194 ADEMADMGFLPPIKRILKQIRQDAQHMLFSATLDHGVDEVVSEFLHDPKVHSVDEVTSNV 253

Query: 215 ETI-EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
           +++  H F+ +    + K A++++L   +      I+F   K     L H+L + G    
Sbjct: 254 DSMTHHLFLVS---RNDKAAVVRELASGRGRR---ILFTRTKFQAKKLAHTLTQSGIPAA 307

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            +HGN+ Q  R + L  F+ G + ++VA+D+AARG+D+ +VG V   + P   +++ HR 
Sbjct: 308 ELHGNLSQHQRDRNLQVFESGQVNVLVATDVAARGIDVSNVGLVVQVEPPEDPKSFTHRS 367

Query: 334 GRTGRAGRHGKAFTLVA---KEDIKHI-----------------DAIEKLIEKKVDWLNG 373
           GRT RAG+ G   TL+    K  I+H+                   +++L+ +K D ++G
Sbjct: 368 GRTARAGQSGDVVTLMTPDQKRKIRHLFKEVDIKLKPVEVTPESPQVQELVGQKADPVHG 427

Query: 374 -DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQ 432
            +L  L     K +  +    R      ++      R    + +  H P +   +I+K Q
Sbjct: 428 WELPELERRPRKGNGGKSRRDRGRTNRDEERGNRSARGGRRTGKGEHRPTERERRIAKEQ 487

Query: 433 QDI 435
           Q+ 
Sbjct: 488 QEF 490


>gi|302308874|ref|NP_985999.3| AFR452Cp [Ashbya gossypii ATCC 10895]
 gi|299790837|gb|AAS53823.3| AFR452Cp [Ashbya gossypii ATCC 10895]
          Length = 559

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 125/364 (34%), Positives = 196/364 (53%), Gaps = 15/364 (4%)

Query: 2   DFADLGLSPKVVCAVLDA--GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           D+ + G  P  +  ++    G+ +PTPIQ  TIP  L   D  G+A TG+GKT +F+LP+
Sbjct: 156 DWGESGEMPAELVRIVQERLGFGEPTPIQRVTIPNALHGRDYVGVAATGSGKTLAFLLPI 215

Query: 60  LTILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPF 112
              L +        R   PR L+L PTRELA Q+     ++  ++     VA ++GG  F
Sbjct: 216 FAKLGRLAPLNAVTRQDGPRALVLAPTRELAQQIEAQARQFLSHWQRPCPVASIVGGHSF 275

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E     L+ G +VL+ TPGR+LD      L++  +  LV+DEADRM+DMGF   + ++ +
Sbjct: 276 EEIALSLQGGCEVLVATPGRLLDCLEHHMLVLRQVATLVLDEADRMVDMGFEEQLTDVLA 335

Query: 173 LVPF--TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +     RQ L+F+ATMT  ++K++  +L+N     V    +  + I        A+  +
Sbjct: 336 RIDVLAERQVLMFTATMTHTIEKIANGYLKNAVYATVGGADAEPQ-IRQLVEYVPAEEQR 394

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG-FSVCAIHGNIDQRSRMKILS 289
              L +++L   +     IIF N K     L    E++  F    +HG+  Q  R   L 
Sbjct: 395 FTKLTREVLP--NFAPPIIIFINYKATANWLSEKFERETRFRTTVLHGSRSQEQREHSLR 452

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
             + G + +M+A+++A RG+DIP+V  V NF +P + E+Y+HRIGRTGRAG+ G A T +
Sbjct: 453 QLRSGKVDIMIATNVAGRGIDIPNVSLVVNFQMPFQLEDYVHRIGRTGRAGQSGTALTFL 512

Query: 350 AKED 353
             +D
Sbjct: 513 TDKD 516


>gi|7211427|gb|AAF40306.1|AF156667_1 RNA helicase [Vigna radiata]
          Length = 713

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 180/335 (53%), Gaps = 18/335 (5%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV-------RMPRTLIL 78
           PIQ  T  LVL   D+ G A+TG GKT +FVLP+L  L  G  +        R P  L+L
Sbjct: 154 PIQAMTFDLVLDGSDLVGRARTGQGKTLAFVLPILESLINGPTKSSRKTGYGRTPSVLVL 213

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA +V  +FE YG    L+   L GG P+  Q  KL RG D++I TPGR+ DH  
Sbjct: 214 LPTRELACRVHADFEVYGGAMGLSSCCLYGGAPYNTQEIKLRRGVDIVIGTPGRVKDHIE 273

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--QTLLFSATMTDELQKVSE 196
           RG + ++ ++  V+DEAD ML MGF+  ++ I   V      QTLLFSAT+ D ++ ++ 
Sbjct: 274 RGNIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVENVNKVQTLLFSATLPDWVKHIAA 333

Query: 197 NFLQNPKR---IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
            FL+  K+   +  NT    +  + H  +   A    +  L+  +++   +    IIF  
Sbjct: 334 QFLKPDKKTADLVGNTKMKASTNVRHIVLPCSA--PARSQLIPDIIRCYSSGGRTIIFTE 391

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            K++   L   L        A+HG+I Q  R   L  F+ G    +VA+++AARGLDI D
Sbjct: 392 TKESASQLAGLLP----GARALHGDIQQAQREVTLFGFRSGKFMTLVATNVAARGLDIND 447

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           V  +   + P   E+YIHR GRTGRAG  G A TL
Sbjct: 448 VQLIIQCEFPREVESYIHRSGRTGRAGNTGVAGTL 482


>gi|306823202|ref|ZP_07456578.1| ATP-dependent RNA helicase [Bifidobacterium dentium ATCC 27679]
 gi|309801655|ref|ZP_07695776.1| DEAD/DEAH box helicase [Bifidobacterium dentium JCVIHMP022]
 gi|304553834|gb|EFM41745.1| ATP-dependent RNA helicase [Bifidobacterium dentium ATCC 27679]
 gi|308221787|gb|EFO78078.1| DEAD/DEAH box helicase [Bifidobacterium dentium JCVIHMP022]
          Length = 704

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 197/379 (51%), Gaps = 37/379 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPT-PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           + FA+LG+ P  +  VL A   K   PIQ  T+P  L   DV G  +TG+GKT +F +PM
Sbjct: 26  LTFAELGV-PGPLVRVLAADDKKTAFPIQADTLPDSLAGRDVLGRGRTGSGKTLAFSIPM 84

Query: 60  LTIL---------------------EKGRARVRM-------PRTLILEPTRELAAQVADN 91
           +  L                     ++G A  R        PR L+L PTRELA Q+ D 
Sbjct: 85  VARLGEVDADEYENMSQFRHEVKRVQQGHAEERRSEDFVPRPRGLVLAPTRELANQINDV 144

Query: 92  FEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILV 151
                + Y ++   + GG+ +  Q + L+ GAD+++  PGR+ D   +  L + N+++ V
Sbjct: 145 LTPLAQIYGMSTTTIYGGVRYARQIRDLQAGADIVVACPGRLEDLIQQHALTLENVQVAV 204

Query: 152 IDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           IDEAD M DMGF+P ++ + + V F  Q +LFSAT+   + +V   FL +PK   V++ +
Sbjct: 205 IDEADEMADMGFLPPVKRLLAQVSFDAQIMLFSATLDHGVDEVVNTFLSDPKVHSVDSAT 264

Query: 212 STA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
           +   E   H F  T A+   +  L++ L          I+F   K     L   L K+G 
Sbjct: 265 AAVDEMTHHVFETTQAE---RAELVRTLASGSGRR---ILFTRTKFQTQKLAKDLTKRGI 318

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
               +HGN+ Q  R + L+ F+ G + +MVA+D+AARG+D+  V  V   + P  +++++
Sbjct: 319 PAAELHGNLSQNQRDRNLAAFESGDVNVMVATDVAARGIDVSGVELVVQVEPPEDSKSFL 378

Query: 331 HRIGRTGRAGRHGKAFTLV 349
           HR GRT RAG+ G   T+V
Sbjct: 379 HRSGRTARAGKSGDVVTIV 397


>gi|19527499|gb|AAL89864.1| RE20606p [Drosophila melanogaster]
          Length = 376

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 116/324 (35%), Positives = 190/324 (58%), Gaps = 18/324 (5%)

Query: 45  AQTGTGKTASFVLPMLTIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGK 97
           AQTG+GKTA+F+LP+L+ L       E GR     P+ +I+ PTRELA Q+ +   K+  
Sbjct: 4   AQTGSGKTAAFLLPILSKLLEDPHELELGR-----PQVVIVSPTRELAIQIFNEARKFAF 58

Query: 98  NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
              L + ++ GG  F  QN+ + RG  V+I TPGR+LD  +R  +   +   +V+DEADR
Sbjct: 59  ESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADR 118

Query: 158 MLDMGFIPYIQNITSLVPF--TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
           MLDMGF   ++ I + V      QTL+FSAT  +E+Q+++  FL+N   + +        
Sbjct: 119 MLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACS 178

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
            ++   +    +Y+K+  L++ L +  D     I+F   K+    L   L ++ F   +I
Sbjct: 179 DVKQT-IYEVNKYAKRSKLIEILSEQADGT---IVFVETKRGADFLASFLSEKEFPTTSI 234

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG+  Q  R + L +FK G++++++A+ +A+RGLDI ++ HV N+D+P++ ++Y+HRIGR
Sbjct: 235 HGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGR 294

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDA 359
           TGR G +G+A +    E  + I A
Sbjct: 295 TGRVGNNGRATSFFDPEKDRAIAA 318


>gi|148910547|gb|ABR18348.1| unknown [Picea sitchensis]
 gi|224284155|gb|ACN39814.1| unknown [Picea sitchensis]
 gi|224286107|gb|ACN40764.1| unknown [Picea sitchensis]
          Length = 413

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 199/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDEMGLHENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G    +    L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 102 LDYGLLDCQ---ALVLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTSVRDDQRILMSG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVFDMLRRHSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V K+D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLQD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     V+ L  +++ L
Sbjct: 394 IQRFYNVVVEELPSNVADL 412


>gi|195155931|ref|XP_002018854.1| GL26027 [Drosophila persimilis]
 gi|194115007|gb|EDW37050.1| GL26027 [Drosophila persimilis]
          Length = 578

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 123/350 (35%), Positives = 194/350 (55%), Gaps = 8/350 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L   +   V  +GY   TPIQ   IP++    D+   AQTG+GKTA+F+LP+L +
Sbjct: 164 FEDAKLRDIIAANVTKSGYKLATPIQKVAIPVIAAGRDLMACAQTGSGKTAAFLLPILNL 223

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L      + +  P+ +I+ PTRELA Q+     K+     L +++L GG   + QN+ + 
Sbjct: 224 LLNDAVDLEIGKPQAVIVSPTRELAIQIYHEARKFSHESYLKISILYGGTSVKYQNESIM 283

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TR 178
            G  +LI TPGR+LD   R  +  ++   LV+DEADRMLDMGF   ++ I +        
Sbjct: 284 MGCHLLIATPGRLLDFVERAFITFDDTRFLVMDEADRMLDMGFSESMRKIVTHCTMRAQH 343

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT   E+Q+++  FL N   + +         ++   +    +Y+K+  L+  L
Sbjct: 344 QTLMFSATFPQEIQRMAGEFLNNYIFVTIGVVGGACSDVKQT-IHEVTKYNKRRKLIDIL 402

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +S D     I+F   K+    L   L +      +IHG+  Q  R + L +FK G +++
Sbjct: 403 KESADGT---IVFVETKRGADFLASYLSEAEHPTTSIHGDRLQSQREQALRDFKTGKMKV 459

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           ++A+ +A+RGLDI +V HV N+D+P   ++Y+HRIGRTGR G +G+A + 
Sbjct: 460 LIATSVASRGLDIKNVKHVVNYDMPKTIDDYVHRIGRTGRVGNNGRATSF 509


>gi|2500521|sp|Q40468|IF415_TOBAC RecName: Full=Eukaryotic initiation factor 4A-15; Short=eIF-4A-15;
           AltName: Full=ATP-dependent RNA helicase eIF4A-15
 gi|485945|emb|CAA55739.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 199/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F      I
Sbjct: 42  FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCS---GI 98

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++    +   + L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 99  LQQLAYELLECQALVLAPTRELAQQIEKVMRALGDYLGVKVTACVGGTSVREDQRILSSG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V K+D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     ++ L  +++ L
Sbjct: 394 IQRFYNVVIEELPANVADL 412


>gi|242133498|gb|ACS87799.1| putative ATP-dependent RNA helicase [Crithidia sp. ATCC 30255]
          Length = 885

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 126/361 (34%), Positives = 196/361 (54%), Gaps = 10/361 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL   ++ A+L  G+  PTPIQ K IP +LQ +DV  +A+TG+GKTA+F++PML  
Sbjct: 92  FQTFGLDKPLLDAILKQGFTVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLYH 151

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  +++   R L+L PTREL+ Q+  N     K  +L  A ++GG   + Q + L   
Sbjct: 152 L-KAHSKMVGIRGLVLSPTRELSLQILHNGFALNKFMDLRFAAVVGGDSLDQQFELLASN 210

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+L       L +  +  LV+DEADR+ ++G  P I  I   +P + Q  L
Sbjct: 211 PDLVVATPGRLLHIMEEASLHLTAVRCLVLDEADRLFELGLQPQIGAIMQKIPESCQRAL 270

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ-- 240
           FSATM   L + +   L NP  I ++     ++ ++    A   +  +K A L  LL+  
Sbjct: 271 FSATMPSVLAEFTSAGLHNPVIIRLDAEMKLSDQLKQS--AFLVRNDEKIAALIVLLKRV 328

Query: 241 ---SQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
               +  M N   +IF   K +V  L   L     S   +HG +DQ +R   + +F +  
Sbjct: 329 MHVGEAAMNNAQALIFVESKFHVEFLQMVLTAYDISASGVHGQMDQEARRLAVRSFAKRE 388

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MV +D+AARGLD+P + +V NF  P   + ++HR+GR  RAGR G A++++  ED  
Sbjct: 389 TSVMVVTDVAARGLDLPLLDNVVNFSFPFNPKLFVHRVGRVARAGRSGTAYSIMTFEDFP 448

Query: 356 H 356
           +
Sbjct: 449 Y 449


>gi|169603339|ref|XP_001795091.1| hypothetical protein SNOG_04678 [Phaeosphaeria nodorum SN15]
 gi|118593422|sp|Q0UU86|IF4A_PHANO RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|111067318|gb|EAT88438.1| hypothetical protein SNOG_04678 [Phaeosphaeria nodorum SN15]
          Length = 396

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 132/376 (35%), Positives = 213/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L  +++  V   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F    ++ 
Sbjct: 25  FDAMNLKAELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATF---SIST 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K  + V+  + LIL PTRELA Q+       G   ++     IGG       K L+ G
Sbjct: 82  LQKIDSNVKACQALILAPTRELAQQIQKVVVAIGDFMDVACHACIGGTSVRDDMKALQDG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 142 PQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 202 LSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKE-DWKLDTLSDLYETV 260

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A+
Sbjct: 261 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDVIMKEFRSGSSRVLIAT 319

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 320 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 379

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 380 FYSTQIEEMPMNVADL 395


>gi|115469764|ref|NP_001058481.1| Os06g0701100 [Oryza sativa Japonica Group]
 gi|97536398|sp|P35683|IF4A1_ORYSJ RecName: Full=Eukaryotic initiation factor 4A-1; Short=eIF-4A-1;
           AltName: Full=ATP-dependent RNA helicase eIF4A-1;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 4
 gi|53791892|dbj|BAD54014.1| eukaryotic initiation factor 4A [Oryza sativa Japonica Group]
 gi|53792733|dbj|BAD53769.1| eukaryotic initiation factor 4A [Oryza sativa Japonica Group]
 gi|113596521|dbj|BAF20395.1| Os06g0701100 [Oryza sativa Japonica Group]
 gi|125598400|gb|EAZ38180.1| hypothetical protein OsJ_22532 [Oryza sativa Japonica Group]
 gi|215712230|dbj|BAG94357.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215740601|dbj|BAG97257.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215767366|dbj|BAG99594.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 414

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 199/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 43  FDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     V   + L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 103 LDYA---VVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASG 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 160 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGV 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 220 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLA 279

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 280 ITQ-----SVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  
Sbjct: 335 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFD 394

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     ++ L  +++ L
Sbjct: 395 IQRFYNVVIEELPANVADL 413


>gi|329725341|gb|EGG61824.1| DEAD-box ATP-dependent RNA helicase CshB [Staphylococcus
           epidermidis VCU144]
          Length = 448

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 134/384 (34%), Positives = 207/384 (53%), Gaps = 18/384 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV +  + KPT IQ + IP +L+  ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEHFNLDENLIEAVKNLNFEKPTEIQNRIIPRILKGTNLIGQSQTGTGKSHAFLLPLIQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQ---VADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +E   + ++ P+ +++ PTRELA Q   VA +  K+ K  N  V L IGG   E   ++ 
Sbjct: 66  IE---SDIQEPQAIVVAPTRELAQQLYQVAMHLVKFKKGIN--VKLFIGGTDLEKDKQRC 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++I TP RI D  + G L  +    L+IDEAD M+D+G I  + +I + +     
Sbjct: 121 SHQPQLIIGTPTRINDLAHSGYLHAHLASYLIIDEADLMIDLGLIEDVDHIAARLDDENA 180

Query: 180 TL-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            L +FSAT+   LQ     +L  P+ +EV+  +   E IE   + T     K  A + + 
Sbjct: 181 HLAVFSATIPKSLQPFLNKYLSQPEFVEVDGKAHNKENIEFYLIPT-----KGSAKVDKT 235

Query: 239 LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+  D +     IIFCN ++N   L  +L K+G  +  IHG +  R R + +   +    
Sbjct: 236 LELIDILNPYLCIIFCNSRENADELADTLNKEGIKIGMIHGGLTPRERKQQMKRIRNLDF 295

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q ++ASDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +
Sbjct: 296 QFVIASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEESN 355

Query: 357 IDAIEKLIEK--KVDWLNGDLSSL 378
           I  IE    K   VD  NG+L  +
Sbjct: 356 ITLIEDRGYKFENVDIKNGELKPI 379


>gi|312194304|ref|YP_004014365.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
 gi|311225640|gb|ADP78495.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
          Length = 489

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 115/362 (31%), Positives = 183/362 (50%), Gaps = 6/362 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+  ++   +       PTPIQ  T+P  L   DV G  +TG+GKT +F+LP++ 
Sbjct: 3   SFTDLGVPARLTSVLTRLAIETPTPIQRATLPDALAGRDVLGRGRTGSGKTLAFLLPVVA 62

Query: 62  ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L  G RA+   PR LIL PTRELAAQ+    +       LT   + GG+    Q   + 
Sbjct: 63  RLSGGPRAQAGAPRALILAPTRELAAQIDTALQPLAAVAGLTSCTVFGGVGQNPQVAAIR 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+++  PGR+ D   +    +  ++I V+DEAD M D+GF+P ++ +    P   Q 
Sbjct: 123 RGVDIVVACPGRLEDLIKQRHCSLAQVKITVLDEADHMADLGFLPAVRRLLGQTPSGGQR 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+   +  +   +L  P   E ++  S   T+ H     +  + ++ + L  L+ 
Sbjct: 183 MLFSATLDKAIDTLVRQYLNKPAVHEADSAQSPVGTMAH-----HVLHVERDSRLPVLVD 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F   K     L   L + G     +HGN+ Q +R + L +F+ G    +V
Sbjct: 238 LSSAPGRTVVFTRTKHGAKALARHLNRAGVPTVELHGNLSQNARTRNLDDFQTGRAAALV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   TL   + ++ +  +
Sbjct: 298 ATDIAARGIHVDDVALVIHADPPADHKAYLHRSGRTARAGNSGTVITLATTDQLREVSQL 357

Query: 361 EK 362
            +
Sbjct: 358 AR 359


>gi|171743267|ref|ZP_02919074.1| hypothetical protein BIFDEN_02396 [Bifidobacterium dentium ATCC
           27678]
 gi|283455758|ref|YP_003360322.1| ATP-dependent RNA helicase [Bifidobacterium dentium Bd1]
 gi|171278881|gb|EDT46542.1| hypothetical protein BIFDEN_02396 [Bifidobacterium dentium ATCC
           27678]
 gi|283102392|gb|ADB09498.1| ATP-dependent RNA helicase [Bifidobacterium dentium Bd1]
          Length = 704

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 197/379 (51%), Gaps = 37/379 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPT-PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           + FA+LG+ P  +  VL A   K   PIQ  T+P  L   DV G  +TG+GKT +F +PM
Sbjct: 26  LTFAELGV-PGPLVRVLAADDKKTAFPIQADTLPDSLAGRDVLGRGRTGSGKTLAFSIPM 84

Query: 60  LTIL---------------------EKGRARVRM-------PRTLILEPTRELAAQVADN 91
           +  L                     ++G A  R        PR L+L PTRELA Q+ D 
Sbjct: 85  VARLGEVDADEYENMSQFRHEVKRVQQGHAEERRSEDFVPRPRGLVLAPTRELANQINDV 144

Query: 92  FEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILV 151
                + Y ++   + GG+ +  Q + L+ GAD+++  PGR+ D   +  L + N+++ V
Sbjct: 145 LTPLAQIYGMSTTTIYGGVRYARQIRDLQAGADIVVACPGRLEDLIQQHALTLENVQVAV 204

Query: 152 IDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           IDEAD M DMGF+P ++ + + V F  Q +LFSAT+   + +V   FL +PK   V++ +
Sbjct: 205 IDEADEMADMGFLPPVKRLLAQVSFDAQIMLFSATLDHGVDEVVNTFLSDPKVHSVDSAT 264

Query: 212 STA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
           +   E   H F  T A+   +  L++ L          I+F   K     L   L K+G 
Sbjct: 265 AAVDEMTHHVFETTQAE---RAELVRTLASGSGRR---ILFTRTKFQTQKLAKDLTKRGI 318

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
               +HGN+ Q  R + L+ F+ G + +MVA+D+AARG+D+  V  V   + P  +++++
Sbjct: 319 PAAELHGNLSQNQRDRNLAAFESGDVNVMVATDVAARGIDVSGVELVVQVEPPEDSKSFL 378

Query: 331 HRIGRTGRAGRHGKAFTLV 349
           HR GRT RAG+ G   T+V
Sbjct: 379 HRSGRTARAGKSGDVVTIV 397


>gi|126343379|ref|XP_001380649.1| PREDICTED: similar to Gu protein [Monodelphis domestica]
          Length = 902

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 132/375 (35%), Positives = 209/375 (55%), Gaps = 23/375 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ KT   V    D+   A+TGTGKT SF +P++  
Sbjct: 341 FSNFPISEETIQLLKARGVTYLFPIQAKTFHHVSSGKDLIAQARTGTGKTFSFAIPLVEK 400

Query: 63  LE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+   + R R R P+ L+L PTREL+ QV+ +F    K   LTVA   GG P+  Q   +
Sbjct: 401 LQGDSQPRPRGRAPKILVLAPTRELSIQVSKDFSDITKK--LTVACFYGGTPYNGQIDLI 458

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
            RG D+L+ TPGRI DH   G+L +  ++ +V+DE D+MLDMGF   ++ I + V + + 
Sbjct: 459 RRGIDILVGTPGRIKDHLQNGRLDLTKVQHVVLDEVDQMLDMGFAEQVEEILT-VAYKKD 517

Query: 179 -----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSK 230
                QTLLFSAT    +  V++ ++++  +++++        A T+EH  +A    +S+
Sbjct: 518 SEDNPQTLLFSATCPHWVYDVAKKYMKSTYEQVDLIGKKTQKAAVTVEH--LAINCHWSQ 575

Query: 231 KCALLQQLLQ-SQDTMKNGIIFCNQKKNV--VNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
           + A++  ++Q    +    IIFC  KK    ++L  S+++   S   +HG+I Q+ R   
Sbjct: 576 RAAVIGDVIQVYSGSHGRTIIFCETKKEAQELSLNESIKQDAQS---LHGDIPQKQREIT 632

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L  F+ G   ++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G    
Sbjct: 633 LQGFRNGKFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICIC 692

Query: 348 LVAKEDIKHIDAIEK 362
              K++   +  +E+
Sbjct: 693 FYQKKEQHQLAQVER 707


>gi|157734244|gb|ABV68940.1| ATP-dependent DEAD-box helicase [Apocynum venetum]
          Length = 447

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 189/370 (51%), Gaps = 11/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KPTPIQ + +  ++Q  D    AQTG+GKT+   L +  +
Sbjct: 34  FNGMGLKEDLIRGIYAYGFEKPTPIQQRAVMPLIQGRDAIAQAQTGSGKTSMIALSVCQV 93

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +     VR  + LIL PTRELA Q        G   N+   + IGG        KLE+G
Sbjct: 94  AD---TSVRDVQALILSPTRELATQTERVLIALGDRININAHVCIGGNSVGEDIHKLEKG 150

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR++D   R  L    I+ILV+DEADRML  GF   I +    +P   Q  L
Sbjct: 151 VHVVSGTPGRLIDMIKRRTLRTRVIKILVLDEADRMLGRGFRDNIYDAYRYLPPELQVCL 210

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            +AT+  EL +++  F+ +P +I       T + I+  FVA   +   +   C +   L 
Sbjct: 211 ITATLPHELIEMTSKFMTDPVKILAKREDLTLDGIKQWFVAVEREDWKFDTLCDIYDSL- 269

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   +    F+   +H ++  + R  I++ FK G  + +
Sbjct: 270 ----TISLAVIFCNTRRKVDWLTDKMHSNQFTASVMHSDMPNKEREVIMNEFKGGATKAL 325

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARG+D+  VG V N+D+P   E YIHRIGRTG+ GR       V  EDI+ +  
Sbjct: 326 ITTDVWARGIDVQQVGIVINYDLPQNRELYIHRIGRTGKFGRKSAVINFVKSEDIRLLRD 385

Query: 360 IEKLIEKKVD 369
           IE+    ++D
Sbjct: 386 IEQYYTSQID 395


>gi|47224688|emb|CAG00282.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 497

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 129/382 (33%), Positives = 206/382 (53%), Gaps = 38/382 (9%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG--- 66
           P+++  +   G+ KPTPIQ +  P+++   D+  IAQTGTGKT +++LP    ++     
Sbjct: 87  PEIMDNIRRVGFDKPTPIQSQAWPVLMSGEDLIAIAQTGTGKTLAYLLPGFIHMDGQPVP 146

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R++   P  L+L PTRELA Q+    +KY +  + T   + GG     Q  K++ G D++
Sbjct: 147 RSKRNGPAMLVLTPTRELALQIEAESKKY-RFLDYTSVCIYGGGDRNGQIAKVQSGVDIV 205

Query: 127 ICTPGRILDHFNRGKLLMNNIEILV---------IDEADRMLDMGFIPYIQNITSLVPFT 177
           I TPGR+ D      + + ++  LV         +DEADRMLDMGF P I  I   V   
Sbjct: 206 IATPGRLNDLQMNELIHLRSVTYLVRVSIGFPEVLDEADRMLDMGFEPQIMKILLDVRPD 265

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++ SAT    ++++++++L++P  + V T    A       +    +  KK  +   
Sbjct: 266 RQTVMTSATWPTAVRRLAKSYLRDPMIVYVGTLDLAAVNTVEQKILIVNEEEKKFYMFD- 324

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            ++  + +   +IF  +K  V +L   +  QG SV ++HG+ +Q  R + L  F+EG ++
Sbjct: 325 FIRDMEPLDKVLIFVGRKILVDDLSSDMCLQGISVQSLHGDREQCDREEALREFREGKVR 384

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG----------------- 340
           ++VA+DLA+RGLD+ D+ HVFN+D P   E Y+HR+GRTGRAG                 
Sbjct: 385 ILVATDLASRGLDVLDITHVFNYDFPRNIEEYVHRVGRTGRAGWVFFLKKPRVYSGFSLT 444

Query: 341 -------RHGKAFTLVAKEDIK 355
                  R G A TLV+++D K
Sbjct: 445 SAFFSSRRSGAAVTLVSRDDWK 466


>gi|2500520|sp|Q40467|IF414_TOBAC RecName: Full=Eukaryotic initiation factor 4A-14; Short=eIF-4A-14;
           AltName: Full=ATP-dependent RNA helicase eIF4A-14
 gi|485943|emb|CAA55742.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 199/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+      +    L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 102 LDYSLVECQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMSKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V K+D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     ++ L  +++ L
Sbjct: 394 IQKFYNVVIEELPANVADL 412


>gi|323305584|gb|EGA59325.1| Fal1p [Saccharomyces cerevisiae FostersB]
          Length = 408

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 121/373 (32%), Positives = 202/373 (54%), Gaps = 14/373 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+  P+ IQ + I  ++   DV   AQ+GTGKTA+F + +L  
Sbjct: 25  FESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQA 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER- 121
           ++    R +  + LIL PTRELA+Q+    +  G   N+    + GG   +   KK+++ 
Sbjct: 85  ID---LRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKH 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD--MGFIPYIQNITSLVPFTRQ 179
           G   +  TPGR+LD   R  L   N+++LV+DEAD +L   +GF   I +I + +P   Q
Sbjct: 142 GCQAVSGTPGRVLDMIKRQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQ 201

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT---YAQYSKKCALLQ 236
            ++ SATM  ++ +V+  F+ +P +I V     + E I+   V       ++   C +  
Sbjct: 202 VVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYD 261

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L     T+   +IFCN KK V  L   L +  F+V ++HG++ Q  R K++++F+ G  
Sbjct: 262 SL-----TITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHS 316

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++++D+  RG+D+  V  V N+D+P   E YIHRIGR+GR GR G A   + K D+  
Sbjct: 317 RVLISTDVWXRGIDVQQVSLVINYDLPEIIEXYIHRIGRSGRFGRKGVAINFITKADLAK 376

Query: 357 IDAIEKLIEKKVD 369
           +  IEK    K++
Sbjct: 377 LREIEKFYSIKIN 389


>gi|121699880|ref|XP_001268205.1| DEAD box  RNA helicase (Hca4), putative [Aspergillus clavatus NRRL
           1]
 gi|134034070|sp|A1CTZ2|DBP4_ASPCL RecName: Full=ATP-dependent RNA helicase dbp4
 gi|119396347|gb|EAW06779.1| DEAD box RNA helicase (Hca4), putative [Aspergillus clavatus NRRL
           1]
          Length = 823

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 146/458 (31%), Positives = 243/458 (53%), Gaps = 34/458 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F+DL LS   +  +  + +   T IQ + I   L+  DV G A+TG+GKT +F++P+L  
Sbjct: 51  FSDLPLSEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPVLEN 110

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  +  A       LIL PTRELA Q+ +   K G+ +  +  L+IGG     + ++L R
Sbjct: 111 LYRRQWAEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLREEQERLGR 170

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++  L    N+++LV+DEADR+LD+GF   +  I   +P  RQT
Sbjct: 171 -MNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIVGHLPKERQT 229

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI---EHCFVATYAQYSKKCALLQQ 237
           LLFSAT T ++  ++   L++P+ + V+  +STA      +H  +A   Q   K  +L  
Sbjct: 230 LLFSATQTKKVSDLARLSLRDPEYVAVHETASTATPAKLQQHYVIAPLPQ---KLDILWS 286

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            ++S    K  ++F +  K V  +  S    + G  +  +HG   Q  R+ I++NF +  
Sbjct: 287 FIRSNLKSKT-MVFFSSGKQVRFVYESFRHMQPGIPLMHLHGRQKQGGRLDIMTNFSQAK 345

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++ ++D+AARGLD P V  V   D P  A+ YIHR+GRT R GR G+A   +   + +
Sbjct: 346 HCVLFSTDVAARGLDFPAVDWVIQMDCPEDADTYIHRVGRTARYGRDGRAVLFLDPSEEE 405

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +  +++L +KKV            P+EKI+I  +      + +  ++  F   +  Y  
Sbjct: 406 GM--LKRLEQKKV------------PIEKINIKANKQQSIKDQL--QNMCFKDPELKYIG 449

Query: 416 QKSHIP------LKESEKISKLQQDIQENDADSLGFRG 447
           QK+ I       +++ ++I KL++   +  A SLG  G
Sbjct: 450 QKAFISYVKSVYIQKDKEIFKLKELKLDEFASSLGLPG 487


>gi|224052117|ref|XP_002190981.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 708

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 135/384 (35%), Positives = 215/384 (55%), Gaps = 26/384 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + V  +   G     P+Q+KT   V    DV   A+TGTGKT SF +P++  
Sbjct: 130 FSNFSISKETVQLLQARGVTYLFPVQVKTFNPVYTGKDVIAQARTGTGKTFSFAIPLIEK 189

Query: 63  LE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+   + R R R P+ L+L PTRELA QVA +F+   +   LTV    GG P+  Q   +
Sbjct: 190 LQGESQERRRGRPPKVLVLCPTRELANQVAKDFKDITRK--LTVGCFYGGTPYNGQIDLM 247

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   GKL +  ++ +V+DE D+MLDMGF   +++I   V + + 
Sbjct: 248 RSGIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILR-VAYKKD 306

Query: 179 -----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSK 230
                QTLLFSAT    +  V++ +++   ++I++        A T+EH  +A    +S+
Sbjct: 307 SEDNPQTLLFSATCPHWVYDVAKKYMKTRYEQIDLIGKKTQKAATTVEH--LAIECHWSQ 364

Query: 231 KCALLQQLLQ-SQDTMKNGIIFCNQKK--NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
           + A++  ++Q    +    I+FC  KK  N + L  S+++   S   +HG+I Q+ R   
Sbjct: 365 RAAVIGDVIQVYSGSQGRTIVFCETKKEANELALNASIKQDCQS---LHGDIPQKQREIT 421

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L  F+ G+ +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G    
Sbjct: 422 LKGFRNGSFKVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICIC 481

Query: 348 LVAKED---IKHIDAIEKLIEKKV 368
              +++   ++H++    +  K+V
Sbjct: 482 FYQRKEEYQLRHVEQKAGITFKRV 505


>gi|242822575|ref|XP_002487915.1| eukaryotic translation initiation factor 4, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218712836|gb|EED12261.1| eukaryotic translation initiation factor 4, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 397

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 132/376 (35%), Positives = 214/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P+++  V   G+ +P+ IQ + I  V++ +DV   AQ+GTGKTA+F    ++ 
Sbjct: 26  FDAMNLKPELLRGVYAYGFERPSAIQQRAIMPVIKGNDVIAQAQSGTGKTATF---SISA 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K  + ++  + LIL PTRELA Q+       G   ++     IGG       K L+ G
Sbjct: 83  LQKIDSSLKACQALILAPTRELAQQIQKVVVAIGDFMSIECHACIGGTNVREDMKALQDG 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 143 PQVVVGTPGRVQDMIQRRVLRTDNIKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 203 LSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 261

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A+
Sbjct: 262 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIAT 320

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 321 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 380

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 381 FYNTQIEEMPMNVADL 396


>gi|312215634|emb|CBX95586.1| similar to eukaryotic initiation factor 4A-I [Leptosphaeria
           maculans]
          Length = 396

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 132/376 (35%), Positives = 214/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L  +++  V   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F    ++ 
Sbjct: 25  FDNMNLKAELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATF---SIST 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K  + V+  + LIL PTRELA Q+       G   ++     IGG       K L+ G
Sbjct: 82  LQKIDSNVKACQALILAPTRELAQQIQKVVVAIGDFMDVQCHACIGGTSVRDDMKALQDG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 142 PQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 202 LSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKE-DWKLDTLSDLYETV 260

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A+
Sbjct: 261 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQIQRDVIMKEFRSGSSRVLIAT 319

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 320 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 379

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 380 FYSTQIEEMPMNVADL 395


>gi|239637630|ref|ZP_04678602.1| ATP-dependent RNA helicase, dead/deah box family [Staphylococcus
           warneri L37603]
 gi|239596848|gb|EEQ79373.1| ATP-dependent RNA helicase, dead/deah box family [Staphylococcus
           warneri L37603]
          Length = 447

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 130/383 (33%), Positives = 204/383 (53%), Gaps = 17/383 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+  ++ AV D  + KPT IQ + IP +L+  ++ G +QTGTGK+ SF+LP++  
Sbjct: 6   FEHFGLNSSMIEAVKDLRFEKPTEIQNRIIPRILKGTNIIGQSQTGTGKSHSFLLPLVNE 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           ++     +  P+ +++ PTRELA Q+   A++   + +  N    L IGG   E   ++ 
Sbjct: 66  ID---TEIHEPQAIVVAPTRELAQQLYQAANHLSSFKEGVN--AKLFIGGTDIEKDRQRC 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   ++I TP RI D    G L  +    L+IDEAD M+D+G I  +  I S +     
Sbjct: 121 NQQPQLVIGTPTRINDLSKSGHLHTHLASYLIIDEADLMIDLGLIEDVDYIASRLEEHSN 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +FSAT+   LQ     +L+ P  +EV+  S   + IE   + T     K  A +++ L
Sbjct: 181 IAVFSATIPKSLQPFLNKYLEQPDFVEVDNQSQNKKNIEFYLIPT-----KGTAKVEKTL 235

Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  D +     IIFCN + +   L  +L + G  V  IHG +  R R + +   +    Q
Sbjct: 236 KLIDILNPYLCIIFCNSRDSADELARTLNEAGIKVGMIHGGLTPRERKQQMKRIRNLDFQ 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++ASDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I
Sbjct: 296 FVIASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYRGVAITLYSPDEEDNI 355

Query: 358 DAIEK--LIEKKVDWLNGDLSSL 378
            AIE    + + VD  N +L+ +
Sbjct: 356 SAIEDRGYVFENVDIKNDELTPI 378


>gi|303277715|ref|XP_003058151.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460808|gb|EEH58102.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 413

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 199/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDAMNLHENLLRGIYAYGFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCAGVLQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  +   +    L+L PTRELA Q+       G   N+     +GG       + L+ G
Sbjct: 102 LDYEKEECQ---ALVLAPTRELAQQIEKVMRALGDYLNVKCHACVGGTSVREDQRILQSG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  ++I+I  +DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVYDMLRRRALKPDHIKIFSLDEADEMLSRGFKDQIYDIFQLLPSKLQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMTKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  + F+V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFANTRRKVDWLTDKMRARDFTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V K+D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERLLQD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +++  +   + L  +++ L
Sbjct: 394 VQRFYQTVFEELPSNVADL 412


>gi|25809054|gb|AAN74635.1| DEAD box RNA helicase [Pisum sativum]
 gi|40950574|gb|AAR97917.1| DEAD box RNA helicase [Pisum sativum]
          Length = 413

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 198/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     V   + L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 102 LDYS---VTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V K+D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLGD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     ++ L  +++ L
Sbjct: 394 IQKFYNVLIEELPSNVAEL 412


>gi|330468862|ref|YP_004406605.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
 gi|328811833|gb|AEB46005.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
          Length = 463

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 125/358 (34%), Positives = 185/358 (51%), Gaps = 9/358 (2%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA+LG+ P  +  VL A G  +P PIQ  T+P  L   DV G  +TG+GKT +FVL +LT
Sbjct: 17  FAELGV-PDALNRVLAASGVDRPFPIQAATLPDALAGRDVLGRGRTGSGKTYAFVLAVLT 75

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L   R   R   PR LIL PTRELA Q+        +  +L    + GG+    Q   L
Sbjct: 76  RLAASRTPRRAGRPRALILVPTRELATQIDSVMAPLAQALSLRTMTIFGGVAARPQIAGL 135

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+  PGR+ DH   G   ++ +EI V+DEAD M D+GF+P ++ +    P   Q
Sbjct: 136 RAGVDVLVACPGRLADHVGTGAAHLDAVEITVLDEADHMADLGFLPTVRRLLEQTPRGGQ 195

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT+   +  +   FL +P    V++  S    + H  +  + + S +  +L +L 
Sbjct: 196 RLLFSATLDAGVDVLVRRFLTDPAVHSVDSGLSPVTAMAHHVL--HVEPSDRFEVLVELT 253

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       ++F   K+    L   L   G +   +HGN+ Q +R + L  F +G +  +
Sbjct: 254 AAPG---RTVVFTRTKRGAKTLARRLVAAGVTAVELHGNLAQGARTRNLQAFADGQVHTL 310

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           VA+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   TL+    +  +
Sbjct: 311 VATDIAARGIHVDDVALVVHADPPVEHKAYLHRSGRTARAGAAGTVVTLMTDGQVPEV 368


>gi|27468163|ref|NP_764800.1| ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228]
 gi|57867091|ref|YP_188700.1| DEAD-box ATP dependent DNA helicase [Staphylococcus epidermidis
           RP62A]
 gi|251810975|ref|ZP_04825448.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876016|ref|ZP_06284883.1| DEAD/DEAH box helicase [Staphylococcus epidermidis SK135]
 gi|293366481|ref|ZP_06613158.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|27315709|gb|AAO04844.1|AE016748_78 ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228]
 gi|57637749|gb|AAW54537.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           epidermidis RP62A]
 gi|251805485|gb|EES58142.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295041|gb|EFA87568.1| DEAD/DEAH box helicase [Staphylococcus epidermidis SK135]
 gi|291319250|gb|EFE59619.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329735213|gb|EGG71505.1| DEAD-box ATP-dependent RNA helicase CshB [Staphylococcus
           epidermidis VCU045]
 gi|329737135|gb|EGG73389.1| DEAD-box ATP-dependent RNA helicase CshB [Staphylococcus
           epidermidis VCU028]
          Length = 448

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 134/384 (34%), Positives = 207/384 (53%), Gaps = 18/384 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV +  + KPT IQ + IP +L+  ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEHFNLDENLIEAVKNLNFEKPTEIQNRIIPRILKGTNLIGQSQTGTGKSHAFLLPLIQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQ---VADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +E   + ++ P+ +++ PTRELA Q   VA +  K+ K  N  V L IGG   E   ++ 
Sbjct: 66  IE---SDIQEPQAIVVAPTRELAQQLYQVAMHLVKFKKGIN--VKLFIGGTDLEKDKQRC 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++I TP RI D  + G L  +    L+IDEAD M+D+G I  + +I + +     
Sbjct: 121 SHQPQLIIGTPTRINDLAHSGYLHAHLASYLIIDEADLMIDLGLIEDVDHIAARLDDENA 180

Query: 180 TL-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            L +FSAT+   LQ     +L  P+ +EV+  +   E IE   + T     K  A + + 
Sbjct: 181 HLAVFSATIPKSLQPFLNKYLSQPEFVEVDGKAHNKENIEFYLIPT-----KGSAKVDKT 235

Query: 239 LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+  D +     IIFCN ++N   L  +L K+G  +  IHG +  R R + +   +    
Sbjct: 236 LELIDILNPYLCIIFCNSRENADELADTLNKEGIKIGMIHGGLTPRERKQQMKRIRNLDF 295

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q ++ASDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +
Sbjct: 296 QFVIASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEESN 355

Query: 357 IDAIEKLIEK--KVDWLNGDLSSL 378
           I  IE    K   VD  NG+L  +
Sbjct: 356 ITLIEDRGYKFENVDIKNGELKPI 379


>gi|295397327|ref|ZP_06807419.1| ATP-dependent RNA helicase [Aerococcus viridans ATCC 11563]
 gi|294974401|gb|EFG50136.1| ATP-dependent RNA helicase [Aerococcus viridans ATCC 11563]
          Length = 450

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 123/365 (33%), Positives = 196/365 (53%), Gaps = 12/365 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    L P +  A+ D  + +P+PIQ   IP++    DV   +QTG+GKT +F+LP+L
Sbjct: 1   MSFTQFNLKPFINDALADLNFYEPSPIQATVIPVIQSGRDVIAQSQTGSGKTHAFLLPLL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY--GKNYNLTVALLIGGIPFEAQNK 117
             I  +   ++     +I  P+RELA Q+     +     + +L +    GG     Q  
Sbjct: 61  NKITAENHTQL-----VITAPSRELAEQLYQAGRQILSFSDEDLHIERAFGGTDTVKQAN 115

Query: 118 KLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +LE     V++ TPGR+LD  N   + ++ +   V+DEAD  LD+GF+  +  I   +P 
Sbjct: 116 RLENAVPQVVVATPGRLLDLINNQLISVHQVTDFVVDEADMTLDLGFLNEVDQIAGRMPK 175

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           +    +FSAT+ D+L+     +L NP+ I +      ++TI++  V    +  +K  L  
Sbjct: 176 SLNMYVFSATIPDKLKPFLRKYLSNPEWITIEARHKISDTIDNYLVPVKGR-DRKALLFD 234

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L   Q  +   +IF N K+ V  L   L+ QG +V  IHG++  R R +++   +    
Sbjct: 235 TLTIGQPYL--ALIFANTKETVQELYKYLKSQGLNVGQIHGDLPARERRRVMKQVQNLDF 292

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VA+DLAARG+DI  V HV N++VPN  E +IHR+GRTGR G+ G A T    +++K 
Sbjct: 293 QYVVATDLAARGIDIDGVSHVINYEVPNELEFFIHRVGRTGRQGKPGTAITFYIPDELKD 352

Query: 357 IDAIE 361
           I+ +E
Sbjct: 353 IEWLE 357


>gi|224073500|ref|XP_002304104.1| predicted protein [Populus trichocarpa]
 gi|118484805|gb|ABK94270.1| unknown [Populus trichocarpa]
 gi|222841536|gb|EEE79083.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 199/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G  + +    L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 102 LDYGLVQCQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+   V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLETLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLFD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     ++ L  +++ L
Sbjct: 394 IQKFYNVVIEELPSNVADL 412


>gi|212704221|ref|ZP_03312349.1| hypothetical protein DESPIG_02276 [Desulfovibrio piger ATCC 29098]
 gi|212672425|gb|EEB32908.1| hypothetical protein DESPIG_02276 [Desulfovibrio piger ATCC 29098]
          Length = 578

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 118/348 (33%), Positives = 194/348 (55%), Gaps = 8/348 (2%)

Query: 4   ADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           A L   P+ + A    AG+    P+Q   +P +L+  D+   ++TG+GKT  ++LP++  
Sbjct: 55  ATLETLPETIAAACGRAGWTSLMPVQSLALPYLLEGRDIMVQSRTGSGKTGCYLLPLVPR 114

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     +   + LIL PTRELA QV        +   +    + GG+ ++ Q   L  G
Sbjct: 115 LDP---ELHAVQALILVPTRELAVQVEHEARTLFEGTGIRPVAVYGGVGYKKQMDALRDG 171

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR-QTL 181
           A +++ TPGR+LDH  R  L + ++++LV DEADRML +GF P ++ +   +P  R  T 
Sbjct: 172 AQLVVGTPGRVLDHLLRRTLSLEDLDVLVFDEADRMLSIGFYPDMKEVQRYLPRRRIHTS 231

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    + K++  FL  P  + ++        ++H F  +      K  +L +LL++
Sbjct: 232 MFSATYPPHVLKLAGEFLTEPSMLSLSQKEVHVAEVQHLFCQSRPM--DKDRVLVRLLET 289

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++   + IIFCN K NV  +   L+  G++   +  ++ Q  R  +L   ++G++Q +VA
Sbjct: 290 ENP-ASAIIFCNTKANVHYITGVLQGFGYNADELSADLSQARREAVLDKIRQGSLQYLVA 348

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +D+AARG+DIP + HVF ++ P   E+YIHR GRTGRAG  G   +LV
Sbjct: 349 TDVAARGIDIPALSHVFLYEPPEDHESYIHRAGRTGRAGAAGTVISLV 396


>gi|146414784|ref|XP_001483362.1| hypothetical protein PGUG_04091 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 433

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 134/388 (34%), Positives = 213/388 (54%), Gaps = 24/388 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLG+S  ++ A+       PT IQ + IP +L   D  G A+TG+GKT +F  PM+
Sbjct: 1   MLFKDLGVSKWLLEALAAMKIRLPTSIQAECIPQILAGRDCIGGAKTGSGKTIAFAAPMM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T   +    +     L+L PTRELA Q+A+ F   G + N+ VA+++GG     Q  +++
Sbjct: 61  TKWSEDPFGIY---GLVLTPTRELALQIAEQFLALGASMNIKVAVVVGGEDMVKQALEIQ 117

Query: 121 RGADVLICTPGRILDH-FNRGKLL---MNNIEILVIDEADRMLDMGFIPYIQNITSLVP- 175
           +    +I TPGR+ DH  N G      +  I+ LV+DEADR+L   F   ++    ++P 
Sbjct: 118 KSPHFIIATPGRLADHILNSGDDTVGGLKRIKFLVLDEADRLLSNSFGSDLERCFKILPD 177

Query: 176 -FTRQTLLFSATMTDELQKVSENFLQNPKRI----------EVNTPSSTAETIEHCFVAT 224
              RQTLLF+AT+TD ++ + +  +   K+           +V  P++   TI + FV +
Sbjct: 178 ASKRQTLLFTATVTDAVRALKDKPVPEGKKPVFIHEIVSKDQVAIPATL--TISYVFVPS 235

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
           Y    K+  L   L+  +      I+F N+      L  +L K    V ++H  + Q  R
Sbjct: 236 YV---KEAYLHNILVLPKYEKALAIVFVNRTYTAEILRRTLRKLDIRVASLHSEMPQSER 292

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
              L  F+ G  ++++A+D+A+RGLDIP+V  V N D+P   ++YIHR+GRT RAG+ G 
Sbjct: 293 TNSLHRFRAGAARVLIATDVASRGLDIPNVELVVNQDIPADPDDYIHRVGRTARAGKKGG 352

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
           + ++V+++D++ I AIE  I KK+D L 
Sbjct: 353 SVSIVSEKDVERILAIENHINKKMDLLE 380


>gi|308162755|gb|EFO65133.1| Translation initiation factor eIF-4A, putative [Giardia lamblia
           P15]
          Length = 391

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 121/376 (32%), Positives = 202/376 (53%), Gaps = 7/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L P ++  +   GY  P+ IQ + I  ++   D    AQ+GTGKTA+F + ML  
Sbjct: 22  FDDMNLHPDLLFGIFTYGYKTPSAIQSQAIVPIISGKDTIAQAQSGTGKTAAFTIGMLQR 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     ++ P+ +IL PTRELA Q     +  G    + VA  IGG   +  +    + 
Sbjct: 82  IDLA---LKSPQAIILSPTRELALQTLKVVDGIGSRLEVQVAQCIGGTQVD-DDIAAAQS 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+L    +  +  +N++++V+DEAD ML  GF   I +I   +    Q +L
Sbjct: 138 CHLIVATPGRLLSLLQKKYVTTSNVKMVVLDEADEMLSRGFTEQIVSIMKFMNADIQIVL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  E+ +++  F+++P  I V     T + I    V    Q + K  +++ + +  
Sbjct: 198 VSATLPPEILELTRQFMRDPVSILVKEAELTLDGIRQYVVDL--QDAWKAEVVEDIYKVL 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            +++ G+IFCN    V  L   L+  G ++  IH  +DQ  R KI+  F+ G  ++++A+
Sbjct: 256 -SVQQGVIFCNSIGRVKELAEKLKSAGHTLSCIHSELDQAERNKIMGEFRSGQTRILIAT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           ++ ARG+D+ +V  V N+D+P   E Y+HRIGR+GR GR G A   V ++D + + AI  
Sbjct: 315 NIIARGIDVQNVSLVINYDIPREPETYLHRIGRSGRFGRKGVAINFVTEKDKQSMQAITD 374

Query: 363 LIEKKVDWLNGDLSSL 378
                 + L  DLSSL
Sbjct: 375 KFNVTTENLPEDLSSL 390


>gi|289663805|ref|ZP_06485386.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 430

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 186/366 (50%), Gaps = 10/366 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           D   L L P    A+  AG    TPIQ+  IP +L   D+   AQTG+GKT ++ LP+L 
Sbjct: 6   DLLSLQLQPLFESALARAGVRTLTPIQVAMIPPMLAGRDLIATAQTGSGKTLAYALPLLQ 65

Query: 62  ILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQN 116
             ++ +A  + PR L   IL PTREL AQVA             L +    GG     Q 
Sbjct: 66  --QRVQAPEQAPRVLGGLILVPTRELVAQVAQTLLPLAAALPRRLKIVAATGGEAINPQL 123

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GAD++I TPGR+LD      L +  +  L++DEADR+LD+GF   +  I  L+P 
Sbjct: 124 MALRGGADIVIATPGRLLDLVAHNALRLAQVSTLLLDEADRLLDLGFGAELDRIFGLLPA 183

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ++L SAT    +  +++  L++P RI +      A  I    +A  A   ++  LL+
Sbjct: 184 QRQSVLVSATFPPAMAALAKWRLRDPLRITIEGTPEQAPAITQRAIAVDA--GQRTQLLR 241

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL  +      ++F   +     +   L K G     +HG + Q  R + L  FK+  +
Sbjct: 242 HLLL-EHAWPQLLVFVASRHTADKVAEKLSKTGIEALPLHGELSQGRRERALRAFKQAEV 300

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+DLA RG+DI  +  V N+D+P    +Y HRIGRT RAG  G A + V  +  + 
Sbjct: 301 QVLVATDLAGRGIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGVAISFVTADSAQQ 360

Query: 357 IDAIEK 362
              IEK
Sbjct: 361 WRLIEK 366


>gi|18310498|ref|NP_562432.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens str. 13]
 gi|18145178|dbj|BAB81222.1| probable RNA helicase [Clostridium perfringens str. 13]
          Length = 407

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 122/371 (32%), Positives = 208/371 (56%), Gaps = 8/371 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           MD F  LGLS +V+ +++  G  +PT IQ K IP +L   +V G A+TGTGKT +++LP+
Sbjct: 3   MDKFLKLGLSEEVLKSLVGLGIEEPTDIQEKAIPEILSGKNVIGKAETGTGKTLAYLLPI 62

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVAD--NFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +  ++  +  ++    +IL PT EL  Q+ +  N  K G    +T   L+G    + Q +
Sbjct: 63  IEKIDDSKNEMQ---AIILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQIE 119

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+    +L+ T GRIL+  N+ K+  N I+ +VIDE D++LD   I  ++++    P  
Sbjct: 120 KLKNKPHILVGTTGRILELINKKKITTNTIKTIVIDEGDKLLDFINIKDVRSVVKSCPRD 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSATM ++  + ++  +   + I+    +   E IEH +     +   K   L++
Sbjct: 180 TQKLIFSATMNEKALETADELIGISELIQAKAANKVNENIEHGYFQ--VELRDKIDFLRK 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ +    K  I+F N   NV N+   L+       ++HG+ ++  R K L +F+ G  +
Sbjct: 238 LIHAIGDEKKIIVFINNSYNVHNVIQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAK 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ SD++ARGLDI    H+ N D+P  ++NY+HR+GR GRAG  G A++L   ++ K I
Sbjct: 298 VLITSDVSARGLDIKGATHIVNLDIPMNSQNYLHRVGRVGRAGEKGFAYSLADYKEEKII 357

Query: 358 DAIEKLIEKKV 368
              E+ ++ K+
Sbjct: 358 VKCERQLKIKI 368


>gi|104774414|ref|YP_619394.1| DEAD-box ATP dependent DNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103423495|emb|CAI98397.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 453

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/364 (34%), Positives = 202/364 (55%), Gaps = 9/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  ++   +   G+ KPTP+Q K IP +L+   V   A TG+GKT ++++P+L  
Sbjct: 5   FTDTRLRSEIRQGLAKIGFTKPTPVQEKVIPAMLKGESVIVQAATGSGKTHAYLIPILNA 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKLE 120
           +++     R  + ++  P+RELA Q+     +   N   N+ +A L GG   + Q  + E
Sbjct: 65  IDED---ARYVQAIVTAPSRELADQLYRVARQLRDNSGLNIAIAHLAGGSDRDRQIARFE 121

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    ++I TPGR+LD  ++  LL++ ++  VIDEAD  LD+GF+  +  I + +P    
Sbjct: 122 QNEPQLVIATPGRLLDFADKKILLLDQVKNFVIDEADMTLDLGFLADVDKIAARLPKDVV 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSAT+  +L      ++  P+ I ++ P+  A TI++  +   ++  KK  + + L 
Sbjct: 182 MSAFSATIPVKLTNFLRKYMAKPEEIVIDNPAVIAPTIKNDLLDIGSKDRKKI-VYKLLT 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  +   ++F N K+ V  L   L KQG  V  IHG+I +R R + L   + G  Q +
Sbjct: 241 MGQPYL--ALVFANTKQMVDELADYLTKQGLKVAKIHGSITERERKRTLREVRAGQYQYV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASDLAARG+D+P V  V N+++P   E  IHRIGRTGR G  G A TLV +E++  + A
Sbjct: 299 VASDLAARGIDLPGVSLVINYEIPKDLEFIIHRIGRTGRNGLPGHAVTLVREEEMNRVGA 358

Query: 360 IEKL 363
           +E +
Sbjct: 359 LEYM 362


>gi|164659842|ref|XP_001731045.1| hypothetical protein MGL_2044 [Malassezia globosa CBS 7966]
 gi|159104943|gb|EDP43831.1| hypothetical protein MGL_2044 [Malassezia globosa CBS 7966]
          Length = 606

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/360 (35%), Positives = 198/360 (55%), Gaps = 17/360 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ +   ++  +   G   PTPIQ++ +P      D+ GIA TG+GKT +F LP++ 
Sbjct: 171 NFRDMKVPDCIIDHLKAKGIQAPTPIQMQGLPTAFSGRDMIGIAFTGSGKTLTFSLPLIL 230

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNF------EKYGKNYNLTVALLIGGI 110
              +   R+       P  LI+ P+RELA Q  D+        +YG    +   L IGGI
Sbjct: 231 FAVEAERRLPFEQGEGPVGLIVCPSRELARQTYDSIIAMAEALEYGGYARIRTLLCIGGI 290

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q+  L RG  +++ TPGR+ D   + +L +++   L +DEADRM+DMGF   ++NI
Sbjct: 291 HMSEQSHVLRRGVHIVVATPGRLQDVLEKKRLGLHSCTYLCLDEADRMMDMGFEDDVRNI 350

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++   +   L +P  + VN   + A +++   V    +Y  
Sbjct: 351 LSFFTRQRQTLLFSATMPKKILDFAAQSLFDP--VIVNVGRAGAASLD---VVQEVEYVS 405

Query: 231 KCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + + + QLL++ Q T    I+F + K  V ++   L ++G    AIHG+  Q  R   + 
Sbjct: 406 QESKMTQLLEALQKTAPRVIVFSDNKNEVDDIHEFLLRKGVEAVAIHGSKTQDEREYAIE 465

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK G   +MVAS +A++GLD  ++ HV N+ +P   E+Y+H+IGRTGR+G+ G A T V
Sbjct: 466 SFKSGKKDVMVASGIASKGLDFSNIQHVINYTMPKDIEDYVHQIGRTGRSGKTGVATTFV 525


>gi|29830989|ref|NP_825623.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680]
 gi|29608103|dbj|BAC72158.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 510

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 187/347 (53%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L +  +++ A+   G  +P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 79  FAALDMPERLLTALGAEGVTEPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 138

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  RA  R P  L+L PTRELA QV D    Y +   L +  ++GG+    Q   L  G
Sbjct: 139 LDGQRAEPRQPLGLVLVPTRELAQQVTDALTPYARALRLRLTTVVGGLSIGRQASALRGG 198

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D  +R    ++ + I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 199 AEVVVATPGRLKDLIDRDDCRLDRVAITVLDEADQMADMGFMPQVTALLDQVRPDGQRML 258

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  +    T+EH  +  +   + K A   ++    
Sbjct: 259 FSATLDRNVDLLVRRYLHDPVVHSVDPSAGAVTTMEHHLL--HVHDTDKHATTTEIAARD 316

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F + K  V  L  +L   G    A+HG   Q  R + L+ FK+G + ++VA+
Sbjct: 317 GRV---IMFLDTKHAVDRLTKNLLSVGVRASALHGGKSQSQRTRTLAQFKDGHVTVLVAT 373

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARG+ + ++  V N D P+  ++Y+HR GRT RAG  G   TLV
Sbjct: 374 NVAARGIHVDNLDLVVNVDPPSDHKDYLHRGGRTARAGESGTVVTLV 420


>gi|88854728|ref|ZP_01129394.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
 gi|88815889|gb|EAR25745.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
          Length = 552

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 121/351 (34%), Positives = 184/351 (52%), Gaps = 8/351 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+ LG+   +V A+   G   P PIQ+ T+P  L   DV G  +TG+GKT +F LPM+  
Sbjct: 6   FSSLGVPAALVAALEADGKTSPFPIQVDTLPDTLGGRDVLGRGKTGSGKTLAFALPMVAR 65

Query: 62  ---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               L  G+ R   P  L+L PTRELA Q++   E     Y L    + GG+    Q   
Sbjct: 66  LGGKLAGGKRRPGRPLGLVLAPTRELATQISAVIEPLAAAYGLNTTTIFGGVSQNRQVAA 125

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+++  PGR+ D   +G + ++ +EI V+DEAD M D+GF+P +  I    P   
Sbjct: 126 LKAGVDIVVACPGRLEDLMKQGFVNLDAVEITVLDEADHMADLGFLPVVTRILDKTPTNG 185

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT+ + + K+   FL N     V+  +S    + H    T +  SK+  L+++L
Sbjct: 186 QRLLFSATLDNGVDKLVRRFLHNEVLHSVDEATSHVSAMTHHVFETESVESKRV-LVEKL 244

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     I+F   K +   L   L   G     +HGN+ Q +R + L+ F  G +++
Sbjct: 245 ASGTGRR---ILFMRTKHHAKKLARQLIDAGIPAVDLHGNLSQVARDRNLAAFSAGDVKV 301

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +VA+D+AARG+ + ++  V + D P   + Y+HR GRT RAG  G   T+V
Sbjct: 302 LVATDVAARGVHVDNIELVIHVDPPAEHKAYLHRSGRTARAGEEGDVVTIV 352


>gi|146300207|ref|YP_001194798.1| DEAD/DEAH box helicase domain-containing protein [Flavobacterium
           johnsoniae UW101]
 gi|146154625|gb|ABQ05479.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae
           UW101]
          Length = 450

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 140/420 (33%), Positives = 216/420 (51%), Gaps = 29/420 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   +  AV + G+V PTPIQ K+  +++   D+ GIAQTGTGKT  F   +  +
Sbjct: 4   FEKFNLPKSLQKAVDELGFVTPTPIQEKSFSVIMSGRDMMGIAQTGTGKT--FAYLLPLL 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                     P+ ++L PTREL  QV +  EK  K  ++    + GG+    Q K +  G
Sbjct: 62  KLYKFTHTNTPKIVVLVPTRELVVQVVEEVEKLTKYMSVKTLGIYGGVNINTQKKAVYEG 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR +D      +  +  + LVIDE D ML++GF P + ++ +++   RQ +L
Sbjct: 122 VDILVGTPGRTMDLALDAVVRFDETQKLVIDEFDEMLNLGFRPQLTSLFAMMKTKRQNIL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATMTDE+  +  ++   P+ + +    +  E I   F      ++ K  LL+ LL++ 
Sbjct: 182 FSATMTDEVDDILNDYFDFPEEVTLAPSGTPLEKITQ-FTYNVPNFNTKVNLLKHLLETD 240

Query: 243 DTMKNGIIFCNQKK---NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++M   ++F N KK    + N    L +  F V  IH N  Q  R+  ++ F+EG ++ +
Sbjct: 241 ESMNRILVFVNNKKISDMLFNRIDELFEGQFGV--IHSNKSQNYRLSTMAEFQEGNLRGL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA--KEDIK-- 355
           + +D+ ARGLDI ++ HV NF++P   E Y+HRIGRTGRA   G A + V   +E+ K  
Sbjct: 299 ITTDVMARGLDISNITHVINFELPEEPELYMHRIGRTGRADATGTAISFVTPREEEFKIE 358

Query: 356 ----------------HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
                            ++  EKLIE + D L        P LE  D A H  ++KN  I
Sbjct: 359 TELLMDQELKISDFPEEVEISEKLIEAEKDKLPRKFLLKKPKLEG-DGAFHEKSKKNQKI 417


>gi|329765536|ref|ZP_08257112.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137974|gb|EGG42234.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 371

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/311 (35%), Positives = 181/311 (58%), Gaps = 9/311 (2%)

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           + PTRELA Q+    +K+GK   + VA + GG     Q   L+RG ++++ TPGR++DH 
Sbjct: 1   MAPTRELAMQITTEIKKFGKYTGIRVATVYGGQGMGLQLDALDRGVEIVVATPGRLIDHL 60

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
            RG + + ++  +V+DEAD MLDMGF+  IQ I  L P  R   LFSATM  E+ +++E 
Sbjct: 61  KRGSIELGDVTHIVLDEADTMLDMGFVDDIQFILDLAPEERVMSLFSATMPTEILRLAEE 120

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGII-FCNQKK 256
           +L+NPK+  ++    + E I+  ++       K    ++ L+     +K  II FC+ K 
Sbjct: 121 YLKNPKQFLLDADDLSGEGIDQAYLVI-----KDRDKMKYLIDFIKPLKGQIIVFCSTKY 175

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
              ++   L ++ F   AI G++ Q  R + +  F+ G + ++VA+D+A+RG+D+P V  
Sbjct: 176 RTRDVAKYLHQEKFDAVAIEGDMSQSRREQSMGKFRSGKVDILVATDVASRGIDVPRVEL 235

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
           V N+DVPN+   Y HRIGRT RAG  G+A TLV+   +   + I++ I+  +  LN ++ 
Sbjct: 236 VVNYDVPNQEMAYFHRIGRTARAGAKGRAITLVSYSSVGDWNLIKRQIKVPLTDLNKEMG 295

Query: 377 ---SLNPPLEK 384
              S+  PL++
Sbjct: 296 IEISIPDPLKR 306


>gi|198413643|ref|XP_002129533.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
           isoform 2 [Ciona intestinalis]
          Length = 401

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 194/368 (52%), Gaps = 57/368 (15%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F  LG+   V+C   D  G+ KP+ IQ + IP+ LQ +DV G+A+TG+GKT +F +P+L 
Sbjct: 22  FQSLGVV-DVLCETCDKLGWKKPSKIQEEAIPVALQGNDVIGLAETGSGKTGAFCIPVLQ 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+ + F+  G    +   +++GG+    Q   L +
Sbjct: 81  ALLENPQRLF---ALVLTPTRELAFQIEEQFKALGSAIGIKTCVVVGGVDMMGQQIILAK 137

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR++DH  + K   + +I+ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 138 KPHVVVATPGRLVDHLEKTKGFTLRSIKFLVLDEADRILNMDFESELDTILKVIPRERRT 197

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT +++K+    L  P +  VN    T + +   ++                L 
Sbjct: 198 FLFSATMTGKVKKLQRAALTKPVKCAVNNKYHTVDKLFQYYL---------------FLP 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+D                                        R+  L+ FK  T  ++V
Sbjct: 243 SKD------------------------------------KDSKRLGALNKFKSATKSILV 266

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V N DVP R+++YIHR+GRT RAGR GK+ T V + D++    I
Sbjct: 267 ATDVASRGLDIPHVDVVINMDVPARSKDYIHRVGRTARAGRFGKSVTFVTQYDVELYQRI 326

Query: 361 EKLIEKKV 368
           E+LI KK+
Sbjct: 327 EELIGKKL 334


>gi|56119116|ref|NP_001007820.1| probable ATP-dependent RNA helicase DDX4 [Bos taurus]
 gi|75071078|sp|Q5W5U4|DDX4_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4
 gi|33332326|gb|AAQ11373.1| DEAD/H box polypeptide 4 [Bos taurus]
          Length = 729

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 134/414 (32%), Positives = 218/414 (52%), Gaps = 21/414 (5%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++    D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 305 IAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKE 364

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 365 LQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 424

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  ++ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 425 PGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 484

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   +    QYSK+  L++ L    D 
Sbjct: 485 TFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQV-GQYSKREKLVEILRNIGD- 542

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 543 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 601

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +         +++  +L 
Sbjct: 602 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFF------DLESDSQLA 655

Query: 365 EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           +  V  L+     +   LE+I  + +      N         D R KNY  + S
Sbjct: 656 QPLVKVLSDAQQDVPAWLEEIAFSTYGPGFSGNARGNVFASVDTR-KNYPGKSS 708


>gi|261327581|emb|CBH10557.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 843

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 120/363 (33%), Positives = 198/363 (54%), Gaps = 10/363 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL   ++  +L  GY  PTPIQ + IP ++Q +D+  +A+TG+GKTA+F++PML +
Sbjct: 28  FQSFGLEKPLLDGILRLGYNVPTPIQRRAIPPMMQGNDIVAMARTGSGKTAAFLIPMLHL 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  +++   R LIL PTREL+ Q+     +  K  +L    L+GG   E Q + L   
Sbjct: 88  L-KAHSKIVGVRGLILSPTRELSMQILRFGIQISKFLDLRFVALVGGNSLEQQFEMLASN 146

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGRIL       L ++ ++ +V+DEADR+ ++G  P I  I   +P + Q  L
Sbjct: 147 PDIVVATPGRILHIMEEASLQLSMVKSIVLDEADRLFELGLQPQIVAIMQKIPESCQRSL 206

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCALLQQLL- 239
           FSATM   L + +   L NP  + ++     ++ ++    FV    + +    LL++++ 
Sbjct: 207 FSATMPSVLAEFTNAGLHNPVVLRLDAEMKLSDKLKQSAFFVRNDEKIAALIVLLKKVIG 266

Query: 240 ------QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                 +S+   K  ++F   K +V  L   +E    S  A+HG +DQ  R   +  F +
Sbjct: 267 IEASDKKSESAEKQALVFVESKFHVDYLEAIMEAYHISCSAVHGQMDQEGRRNAVRAFAK 326

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
               +M+ +D+AARGLD+P + +V NF      + ++HR+GR  RAGR G A++++  ED
Sbjct: 327 RETSVMIVTDVAARGLDLPLLDNVVNFSFAPTPKLFVHRVGRVARAGRSGAAYSILTFED 386

Query: 354 IKH 356
             H
Sbjct: 387 FPH 389


>gi|269795054|ref|YP_003314509.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269097239|gb|ACZ21675.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542]
          Length = 456

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 128/380 (33%), Positives = 198/380 (52%), Gaps = 11/380 (2%)

Query: 2   DFADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F D  L P  +C  L   G   P PIQ+ T+P  L   DV G  +TG+GKT +F LP++
Sbjct: 3   SFTDFSL-PAALCDELARQGITTPFPIQVATLPDTLAGKDVLGRGRTGSGKTLAFALPLV 61

Query: 61  TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           T L   K R  VR+PR L+L PTRELA Q+        ++  L   ++ GG+    Q   
Sbjct: 62  TRLAATKPRRAVRVPRALVLCPTRELANQIEATLAPLARSLGLVTTVIYGGVTQRRQVSA 121

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G DV+I  PGR+ D   +  L +  +E+ VIDEAD M ++GF+P ++ I    P   
Sbjct: 122 LNGGVDVVIACPGRLEDLLQQKALTLEAVEVSVIDEADHMAELGFLPGVRRIMKKTPRGS 181

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT+   + ++ + FL  P    V +P S+   + H  +A      +K A++ +L
Sbjct: 182 QRLLFSATLDHGVDELVDRFLDRPVTHVVESPRSSGAAMTHHVLA-VPDPGEKAAVVARL 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +  T +  ++F   +     L   L  QG     +HG++ Q  R + L  F  G +++
Sbjct: 241 --ASGTGRR-VLFTRTRLQAKKLAKILTAQGIPAVELHGDLAQNVRERNLEAFTSGLVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE---DIK 355
           +VA+D+AARG+ +  V  V + D P   ++Y+HR GRT RAGR G   T++  E   +++
Sbjct: 298 LVATDVAARGIHVDGVELVVHVDPPAEHKSYLHRSGRTARAGRAGDVVTIMLPEQQGEVR 357

Query: 356 HIDAIEKLIEKKVDWLNGDL 375
            +  + K+  K      GD+
Sbjct: 358 DLLRLAKITAKHQQVTVGDV 377


>gi|325090197|gb|EGC43507.1| ATP-dependent RNA helicase DBP8 [Ajellomyces capsulatus H88]
          Length = 539

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 133/384 (34%), Positives = 207/384 (53%), Gaps = 20/384 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL+P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F  P   I
Sbjct: 111 FASLGLAPWLVGSLSTMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAFAAP---I 167

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K          +IL PTRELA Q+ +  +      +L   L+ GG     Q   L + 
Sbjct: 168 LQKWAEDPFGIFAVILTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIALSQR 227

Query: 123 ADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSLVP 175
             ++I TPGR+ DH           +N   ++V DEADR+L  G    +P ++   S +P
Sbjct: 228 PHIVIATPGRLADHITSSGADTICGLNRTRVVVFDEADRLLASGPGSMLPDVETCLSTLP 287

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE---TIEHCFVATYAQY-- 228
               RQTLLF+AT+T E++ + ++  +   ++ +     + E   +I      TY Q   
Sbjct: 288 PSTARQTLLFTATVTPEVRAL-KSMPRPANKLPIFVTEVSTENKASIPPTLKQTYLQVPL 346

Query: 229 SKKCALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
           + + A L  L+ +  ++ K  IIFCN+ K    +   L + G  V ++H  + Q  R   
Sbjct: 347 THREAFLHTLISTAANSQKPAIIFCNRTKTADLVERMLRRLGHRVTSLHSLLPQSERTAN 406

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           LS F+    +++VA+D+AARGLDIP V  V NFDVP   ++Y+HR+GRT RAGR G+A T
Sbjct: 407 LSRFRASAARILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGREGEAVT 466

Query: 348 LVAKEDIKHIDAIEKLIEKK-VDW 370
           LV + D++ + AIE  + ++ V+W
Sbjct: 467 LVGQRDVQLVLAIEDRVGREMVEW 490


>gi|258448717|ref|ZP_05696829.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A6224]
 gi|257857995|gb|EEV80884.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A6224]
          Length = 448

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/381 (33%), Positives = 203/381 (53%), Gaps = 13/381 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ + IP +L+R ++ G +QT TGK+ +F+LP++ +
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTSTGKSHAFLLPLMQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++   + ++ P+ +++ PTRELA Q+ D      +    ++V + IGG   E   ++   
Sbjct: 66  ID---SEIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRCNA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L ++    LVIDEAD M+D+G I  +  I + +       
Sbjct: 123 QPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNANIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +LQ     +L +P+ + V++     + IE   + T     K  A +++ L  
Sbjct: 183 VFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPT-----KGAAKVEKTLNL 237

Query: 242 QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            D +     IIFCN + N  +L  SL + G  V  IHG +  R R + +   +    Q +
Sbjct: 238 IDILNPYLCIIFCNSRDNANDLASSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYV 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +ASDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  
Sbjct: 298 IASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISL 357

Query: 360 IEK--LIEKKVDWLNGDLSSL 378
           IE    +   VD  +G+L  +
Sbjct: 358 IEDRGFVFNTVDIKDGELKEV 378


>gi|240278937|gb|EER42443.1| ATP-dependent RNA helicase DBP8 [Ajellomyces capsulatus H143]
          Length = 539

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 136/387 (35%), Positives = 206/387 (53%), Gaps = 26/387 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL+P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F  P   I
Sbjct: 111 FASLGLAPWLVGSLSTMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAFAAP---I 167

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K          +IL PTRELA Q+ +  +      +L   L+ GG     Q   L + 
Sbjct: 168 LQKWAEDPFGIFAVILTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIALSQR 227

Query: 123 ADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSLVP 175
             ++I TPGR+ DH           +N   ++V DEADR+L  G    +P ++   S +P
Sbjct: 228 PHIVIATPGRLADHITSSGADTICGLNRTRVVVFDEADRLLASGPGSMLPDVETCLSALP 287

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKR------IEVNTPSSTAETIEHCFVATYAQ 227
               RQTLLF+AT+T E++ +    +  P         EV+T +    +I      TY Q
Sbjct: 288 PSTARQTLLFTATVTPEVRALKS--MPRPANKLPIFVTEVSTENKA--SIPPTLKQTYLQ 343

Query: 228 Y--SKKCALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
              + + A L  L+ +  ++ K  IIFCN+ K    +   L + G  V ++H  + Q  R
Sbjct: 344 VPLTHREAFLHTLISTAANSQKPAIIFCNRTKTADLVERMLRRLGHRVTSLHSLLPQSER 403

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
              LS F+    +++VA+D+AARGLDIP V  V NFDVP   ++Y+HR+GRT RAGR G+
Sbjct: 404 TANLSRFRASAARILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGREGE 463

Query: 345 AFTLVAKEDIKHIDAIEKLIEKK-VDW 370
           A TLV + D++ + AIE  + ++ V+W
Sbjct: 464 AVTLVGQRDVQLVLAIEDRVGREMVEW 490


>gi|223043299|ref|ZP_03613346.1| ATP-dependent rna helicase, dead/deah box family [Staphylococcus
           capitis SK14]
 gi|222443510|gb|EEE49608.1| ATP-dependent rna helicase, dead/deah box family [Staphylococcus
           capitis SK14]
          Length = 447

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 134/383 (34%), Positives = 203/383 (53%), Gaps = 17/383 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ + IP +L+  ++ G +QTGTGKT SF+LP++ +
Sbjct: 6   FEHFNLDESLIKAVQDLNFEKPTEIQNRIIPRILKGTNLIGQSQTGTGKTHSFLLPLIQM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           ++     ++ P+ +++ PTRELA Q+   A +  K+ +  N  V L IGG   E   ++ 
Sbjct: 66  ID---VDLQEPQAIVVAPTRELAQQLFQAASHLCKFKQEVN--VKLFIGGTDIEKDKQRC 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R   ++I TP RI D    G L  +    L++DEAD M+D+G I  +  I + +     
Sbjct: 121 NRQPQLIIGTPTRINDLAQGGHLHAHLASNLIVDEADLMIDLGLIEDVDYIAARLNDEAH 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +FSAT+   LQ     +L  P+ +EV+  S   + IE   + T     K  A + + L
Sbjct: 181 IAVFSATIPKSLQPFLNKYLSQPEFVEVDHKSHNKKNIEFYLIPT-----KGTAKVDKTL 235

Query: 240 QSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              D +     IIFCN ++N   L  SL K+G  V  IHG +  R R + +   +    Q
Sbjct: 236 NLIDILNPYLCIIFCNSRENANELADSLNKEGIKVGMIHGGLTPRERKQQMKRIRNLDFQ 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++ASDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I
Sbjct: 296 YVIASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNI 355

Query: 358 DAIEK--LIEKKVDWLNGDLSSL 378
             IE      + VD  NG+L  +
Sbjct: 356 SLIEDKGYHFENVDIKNGELKPI 378


>gi|92081444|dbj|BAE93269.1| RNA helicase [Tubifex tubifex]
          Length = 402

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 117/316 (37%), Positives = 188/316 (59%), Gaps = 13/316 (4%)

Query: 40  DVCGIAQTGTGKTASFVLPMLTIL-----EKGR-ARVRMPRTLILEPTRELAAQVADNFE 93
           D+   AQTG+GKTA+F+LP+LT +     E G+ + V+ P+ +I+ PTREL  Q+ +   
Sbjct: 5   DMMACAQTGSGKTAAFLLPVLTGMLRNGVEGGQFSVVQEPQAIIVGPTRELVTQIYNEAR 64

Query: 94  KYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVID 153
           K+  N  +   ++ GG+    Q +++ +GA +++ T GR+LD   +G L +  ++  ++D
Sbjct: 65  KFAHNTMVRPVVVYGGVTTGYQAREVSKGAHLVVGTAGRLLDFIRKGYLSLAKVKYFILD 124

Query: 154 EADRMLDMGFIPYIQNITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNT 209
           EADRMLDMGF+P +  + + +       RQTL+FSAT  +E+Q++++  L +   + V  
Sbjct: 125 EADRMLDMGFLPNMMALANELGMPAKTERQTLMFSATFPEEVQQLAKELLNDYIFVTVGR 184

Query: 210 PSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269
                  IE   V    Q++K+  L+  +L SQ   +  ++F  QK+    +   L +  
Sbjct: 185 VGGANTDIEQ-HVLQVDQFNKREKLVS-ILNSQGQQRT-LVFVEQKRQADFIASYLSQSE 241

Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329
           F   +IHG+ +QR R + L +FK GT  ++VA+ +AARGLDIP V HV NFD+P   + Y
Sbjct: 242 FPTTSIHGDREQREREEALRDFKNGTAPILVATSVAARGLDIPGVNHVINFDMPQSIDEY 301

Query: 330 IHRIGRTGRAGRHGKA 345
           +HRIGRTGR G  G+A
Sbjct: 302 VHRIGRTGRCGNLGRA 317


>gi|327307374|ref|XP_003238378.1| ATP-dependent RNA helicase DBP8 [Trichophyton rubrum CBS 118892]
 gi|326458634|gb|EGD84087.1| ATP-dependent RNA helicase DBP8 [Trichophyton rubrum CBS 118892]
          Length = 528

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 137/382 (35%), Positives = 210/382 (54%), Gaps = 17/382 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL+  +V ++      +PT IQ   IP +++  D  G ++TG+GKT +F  P+L  
Sbjct: 101 FSSLGLASWLVSSLKAMEIKRPTAIQKSCIPEIMKGRDCIGGSRTGSGKTVAFAAPILHK 160

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             +    V     +IL PTRELA Q+ +  +      +L   L+ GG     Q   L + 
Sbjct: 161 WSEDPFGVY---AVILTPTRELALQIFEQVKAISAPQSLKPLLITGGSDMRPQAIGLSQR 217

Query: 123 ADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSLVP 175
             ++I TPGR+ DH         + +  + ++V+DEADR+L  G    +P ++   S +P
Sbjct: 218 PHIVIATPGRLADHIKSSGEDTIIGLKRVRMVVLDEADRLLTSGPGSMLPDVETCLSALP 277

Query: 176 FT--RQTLLFSATMTDELQKV-SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY--SK 230
            +  RQTLLF+AT+T E++ + S    +N   I V+  S+   TI      TY Q   + 
Sbjct: 278 PSSDRQTLLFTATVTPEVRALKSMPRAKNKLPIFVSEISTENTTIPPTLKQTYLQVPLNH 337

Query: 231 KCALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A L  LL +  ++ K+ IIFCN+ K    L   L +    V ++H  + Q  R+  LS
Sbjct: 338 REAFLHVLLSTGGNSSKSTIIFCNRTKTADLLERILRRLSHRVTSLHSLLPQSERVANLS 397

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+    +L+VA+D+AARGLDIP VG V N+DVP   ++YIHR+GRT RAGR G+A TLV
Sbjct: 398 RFRASAARLLVATDVAARGLDIPSVGLVINYDVPRNPDDYIHRVGRTARAGREGEAITLV 457

Query: 350 AKEDIKHIDAIEKLIEKK-VDW 370
            + D++ + AIE  + K+ V W
Sbjct: 458 GQRDVQLVLAIEARVGKQMVAW 479


>gi|296475821|gb|DAA17936.1| probable ATP-dependent RNA helicase DDX4 [Bos taurus]
          Length = 729

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 134/414 (32%), Positives = 218/414 (52%), Gaps = 21/414 (5%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q  +IP++    D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 305 IAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKE 364

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 365 LQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 424

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  ++ LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 425 PGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSA 484

Query: 186 TMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           T  +E+Q+++  FL+ N   + V         ++   +    QYSK+  L++ L    D 
Sbjct: 485 TFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQV-GQYSKREKLVEILRNIGD- 542

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++VA+ +
Sbjct: 543 -ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 601

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +         +++  +L 
Sbjct: 602 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFF------DLESDSQLA 655

Query: 365 EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           +  V  L+     +   LE+I  + +      N         D R KNY  + S
Sbjct: 656 QPLVKVLSDAQQDVPAWLEEIAFSTYGPGFSGNARGNVFASVDTR-KNYHGKSS 708


>gi|229821963|ref|YP_002883489.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333]
 gi|229567876|gb|ACQ81727.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM
           12333]
          Length = 636

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 130/383 (33%), Positives = 204/383 (53%), Gaps = 12/383 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLG+   +  ++ + G   P PIQ  T+P  L   DV G  +TG+GKT +F LPM+  
Sbjct: 27  FSDLGVPGPLARSLAERGITMPFPIQTATLPDTLAGRDVLGRGRTGSGKTLAFSLPMVAR 86

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G A  R  PR L+L PTRELA Q+++      +   L   ++ GG+    Q   L  
Sbjct: 87  LAGGSAVGRARPRGLVLAPTRELATQISETLTPLAQALGLRTTVIFGGVSQGRQVTALND 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+L+  PGR+ D   +G L ++ +EI V+DEAD M D+GF+P ++ I    P   Q +
Sbjct: 147 GVDILVACPGRLEDLLGQGLLTLDAVEITVLDEADHMADLGFLPGVKRILDRTPRGGQRM 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+ + +  + + +L +P    V++ SS  A    H F    A   ++   L +LL 
Sbjct: 207 LFSATLDNGVDVLVKRYLSDPLTHSVDSASSPVARMTHHIFEVANADAKRE---LVELLA 263

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S  T +  ++F   K     L   L + G     +HGN+ Q +R + L+ F  G +++MV
Sbjct: 264 SGSTRR--LLFMRTKHQARKLARQLTESGIPAADLHGNLSQNARERNLAAFTSGELKVMV 321

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE---DIKHI 357
           A+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   T++  E   D++ +
Sbjct: 322 ATDIAARGIHVDDVDLVVHVDPPAEHKAYLHRSGRTARAGAGGDVVTIMLPEQRSDVRSL 381

Query: 358 DAIEKLIE--KKVDWLNGDLSSL 378
               K+    ++V   + D+ +L
Sbjct: 382 TRAAKISAQPRRVSLSDDDVRAL 404


>gi|330872116|gb|EGH06265.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 276

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 114/278 (41%), Positives = 165/278 (59%), Gaps = 10/278 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A +  K +
Sbjct: 181 LPAKRQNLLFSATFSNDITSLASKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
           LL  L+ +    +  ++F   K     L   L+K G +
Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLA 275


>gi|72387978|ref|XP_844413.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|62358560|gb|AAX79020.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
 gi|70800946|gb|AAZ10854.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
          Length = 843

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 120/363 (33%), Positives = 198/363 (54%), Gaps = 10/363 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL   ++  +L  GY  PTPIQ + IP ++Q +D+  +A+TG+GKTA+F++PML +
Sbjct: 28  FQSFGLEKPLLDGILRLGYNVPTPIQRRAIPPMMQGNDIVAMARTGSGKTAAFLIPMLHL 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  +++   R LIL PTREL+ Q+     +  K  +L    L+GG   E Q + L   
Sbjct: 88  L-KAHSKIVGVRGLILSPTRELSMQILRFGIQISKFLDLRFVALVGGNSLEQQFEMLASN 146

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGRIL       L ++ ++ +V+DEADR+ ++G  P I  I   +P + Q  L
Sbjct: 147 PDIVVATPGRILHIMEEASLQLSMVKSIVLDEADRLFELGLQPQIVAIMQKIPESCQRSL 206

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCALLQQLL- 239
           FSATM   L + +   L NP  + ++     ++ ++    FV    + +    LL++++ 
Sbjct: 207 FSATMPSVLAEFTNAGLHNPVVLRLDAEMKLSDKLKQSAFFVRNDEKIAALIVLLKKVIG 266

Query: 240 ------QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                 +S+   K  ++F   K +V  L   +E    S  A+HG +DQ  R   +  F +
Sbjct: 267 IEASDKKSESAEKQALVFVESKFHVDYLEAIMEAYHISCSAVHGQMDQEGRRNAVRAFAK 326

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
               +M+ +D+AARGLD+P + +V NF      + ++HR+GR  RAGR G A++++  ED
Sbjct: 327 RETSVMIVTDVAARGLDLPLLDNVVNFSFAPTPKLFVHRVGRVARAGRSGAAYSILTFED 386

Query: 354 IKH 356
             H
Sbjct: 387 FPH 389


>gi|218887342|ref|YP_002436663.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758296|gb|ACL09195.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 990

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 187/343 (54%), Gaps = 7/343 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P +  A   AG+    P+Q   +P +  + D+   ++TG+GKT +F+LP+L  L    
Sbjct: 116 LPPMMQEAAARAGWTNLMPVQTHALPYIFAKRDLMVQSRTGSGKTGAFLLPLLERLSPDE 175

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
             V+    LIL PTRELA QV        +   L VA + GG+ +  Q   L  GA +++
Sbjct: 176 PAVQ---ALILVPTRELALQVEYEARVLFEGTGLNVAAVYGGVGYGKQMDALRDGAHLVV 232

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR-QTLLFSAT 186
            TPGR+LDH  R  + ++ I  LV DEADRML +GF P ++ I   +P  R    LFSAT
Sbjct: 233 GTPGRVLDHLLRRTMNLDRIRALVFDEADRMLSIGFYPDMKEIQRYLPKRRISAYLFSAT 292

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
               +  ++  FL  P+ + ++         +H +  T      +   L ++++S++   
Sbjct: 293 YPPHVLNLAGEFLSEPRMLSLSHQQVHVAQTQHLYCETKPMDKDRA--LVRIIESENPTA 350

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             IIFCN K NV  +   L+  G++   +  ++ Q  R ++L + ++G ++ +VA+D+AA
Sbjct: 351 -AIIFCNTKANVHYVTAVLQGFGYNADELSADLTQAKREQVLGSLRKGGVRFLVATDVAA 409

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           RG+DIPD+ HV  ++ P   E+YIHR GRTGRAG  G   +LV
Sbjct: 410 RGIDIPDLSHVILYEPPEDRESYIHRAGRTGRAGSAGTVISLV 452


>gi|147834872|emb|CAN70196.1| hypothetical protein VITISV_040309 [Vitis vinifera]
          Length = 410

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 125/364 (34%), Positives = 191/364 (52%), Gaps = 11/364 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G    +    L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 102 LDYGLVECQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V ++D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFD 393

Query: 360 IEKL 363
           I++ 
Sbjct: 394 IQRF 397


>gi|307279184|ref|ZP_07560242.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
 gi|306504309|gb|EFM73521.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
          Length = 452

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 207/367 (56%), Gaps = 15/367 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P +  A+ + G+ +PT +Q K IP++ +   V G +QTG+GKT +F+LP++  
Sbjct: 7   FKQFQFQPFINEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLM-- 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
            +K +  +   + +I  P+RELA Q+    ++  +     + V+  +GG   + Q  KL+
Sbjct: 65  -DKVKPTIDEVQIVITAPSRELANQIYQEAQQLARFSQPEIQVSNFVGGTDKQRQLNKLK 123

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   V+I TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I   +P   Q
Sbjct: 124 HQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKLQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+ ++L+   + +L+NP    +   +  +ETI++  ++T  + S +  ++ QLL
Sbjct: 184 MLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNQ--IIYQLL 241

Query: 240 QSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               T+ +    I+F N K+ V  +   L+ QG  V  IHG+I  R R +++   +    
Sbjct: 242 ----TIGHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDY 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VA+DLAARG+DI  V HV N +VP+  + +IHR+GRTGR G +G A TL +  D + 
Sbjct: 298 QYVVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEA 357

Query: 357 IDAIEKL 363
           I  IE+L
Sbjct: 358 ITQIEQL 364


>gi|302696785|ref|XP_003038071.1| hypothetical protein SCHCODRAFT_47286 [Schizophyllum commune H4-8]
 gi|300111768|gb|EFJ03169.1| hypothetical protein SCHCODRAFT_47286 [Schizophyllum commune H4-8]
          Length = 441

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 131/398 (32%), Positives = 206/398 (51%), Gaps = 45/398 (11%)

Query: 24  PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRE 83
           PT IQ   IP +L+  D  G A+TG+GKT +F LP+L  L      +     L+L PTRE
Sbjct: 6   PTDIQAACIPPLLEGRDCIGNAKTGSGKTIAFALPILQKLSVDPFGIF---ALVLTPTRE 62

Query: 84  LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR--GK 141
           LA Q+A+ F   G   ++  A+++GG+ F AQ  +L +   V++ TPGRI+DH     G+
Sbjct: 63  LAFQIAEQFAVLGAPLSVRTAVIVGGMDFVAQAIELGQRPHVVVATPGRIVDHLKSSGGE 122

Query: 142 LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN---- 197
             ++ + +LV+DEADR+L   F P +  +  ++P  RQT LF+AT+TD ++K+++     
Sbjct: 123 WDLSRVRMLVLDEADRLLTSTFTPELSYLFGVLPKDRQTALFTATLTDAIEKLADAPPRP 182

Query: 198 FLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLLQSQDTMKNG------- 248
             Q P    +     T  T++  +  V ++ + +    LL    +S   ++         
Sbjct: 183 GKQKPVIHRMKESVETVATLKQYYILVPSHVREAYLFHLLAHPPESTLALRRAPPEPTTK 242

Query: 249 -----------------------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
                                  IIFC++ +    L   L+  G    A+H  + QR R+
Sbjct: 243 QRKPKKASAVLPDDEVPPPPPPTIIFCHKPRTAAYLTLLLQTLGIRSTALHSRLTQRERL 302

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L  F+   + ++V++D+ ARGLDI DV  V N+DVP  AE Y HR+GRT RAGRHG A
Sbjct: 303 ASLGLFRAAVVPVLVSTDVGARGLDISDVALVVNWDVPGEAEEYTHRVGRTARAGRHGVA 362

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWL----NGDLSSLN 379
            + V + D + +  +E+ I+ K++ L       LS LN
Sbjct: 363 VSFVTERDEERVLKVEERIKTKLEELVLPEEAVLSKLN 400


>gi|212546709|ref|XP_002153508.1| eukaryotic translation initiation factor 4, putative [Penicillium
           marneffei ATCC 18224]
 gi|210065028|gb|EEA19123.1| eukaryotic translation initiation factor 4, putative [Penicillium
           marneffei ATCC 18224]
          Length = 397

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 132/376 (35%), Positives = 213/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P+++  V   G+ +P+ IQ + I  V++ +DV   AQ+GTGKTA+F    ++ 
Sbjct: 26  FDAMNLKPELLRGVYAYGFERPSAIQQRAIMPVIKGNDVIAQAQSGTGKTATF---SISA 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    ++  + LIL PTRELA Q+       G   ++     IGG       K L+ G
Sbjct: 83  LQKIDGSLKACQALILAPTRELAQQIQKVVVAIGDFMSIECHACIGGTNVREDMKALQDG 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 143 PQVVVGTPGRVQDMIQRRVLRTDNIKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 203 LSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 261

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A+
Sbjct: 262 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIAT 320

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 321 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 380

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 381 FYNTQIEEMPMNVADL 396


>gi|322502866|emb|CBZ37948.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 405

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 123/369 (33%), Positives = 200/369 (54%), Gaps = 8/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +  L  ++   + + G+ KP+P+Q + IP+ LQ  DV   A+ GTGKTASFV+P  
Sbjct: 30  VNFEEYALRRELQMGIFEKGFEKPSPVQEEAIPVALQGKDVLARAKNGTGKTASFVIP-- 87

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
            +LEK   R    + L++ PTRELA Q A   ++ GK+   L V +  GG        +L
Sbjct: 88  -VLEKVDTRESYVQALLMVPTRELALQTAQVTKELGKHIPGLEVMVTTGGTTLRDDILRL 146

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LD  ++  + +++  ILV+DEAD++L   F+  I ++ + +P   Q
Sbjct: 147 TSKVHILVATPGRVLDLASKKAVDLSHCHILVLDEADKLLSQEFMEIIDDLYTYLPSQLQ 206

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           ++LFSAT    ++  +E  L NP  I +    +     ++     + +  +K   L  L 
Sbjct: 207 SMLFSATFPVTVKTFAERHLHNPYEINLMDELTLKGVTQY---YAFVEERQKIHCLNTLF 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++  +   IIFCN    V  L   + + G+S   IH  + Q+ R ++  +F+EG  + +
Sbjct: 264 -NKLQINQSIIFCNSVNRVELLAKKITQLGYSCYYIHARMQQQHRNRVFHDFREGHCRNL 322

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A   V  +D  ++  
Sbjct: 323 VCSDLITRGIDIQAVNVVINFDFPKYAETYLHRIGRSGRFGHLGVAINFVTYDDRYNVYR 382

Query: 360 IEKLIEKKV 368
           IE+ ++ ++
Sbjct: 383 IEQELDTEI 391


>gi|124088187|ref|XP_001346998.1| RNA helicase [Paramecium tetraurelia strain d4-2]
 gi|145474579|ref|XP_001423312.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|50057387|emb|CAH03371.1| RNA helicase, putative [Paramecium tetraurelia]
 gi|124390372|emb|CAK55914.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1157

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 133/407 (32%), Positives = 209/407 (51%), Gaps = 17/407 (4%)

Query: 2   DFADLGLSPKVVCAVLDAG-YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++   GL+ +V+  +++   ++ P PIQ + +P ++   D  GIA+TG+GKT +++LP+L
Sbjct: 504 NWYQCGLNDRVLNVLIEKKKFINPFPIQAQAVPCIMSGRDFIGIAETGSGKTLAYLLPLL 563

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   L+ G      P  +I+ PTRELA Q+  N   +    NL V   +GG     
Sbjct: 564 RHVLDQPALKDGDG----PIAIIMAPTRELAHQIYVNCRWFTSILNLNVVCCVGGAGIAG 619

Query: 115 QNKKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNIT 171
           Q   L+RG ++++CTPGR++D    + GK+  +  +  +VIDEADRM D+GF P I  I 
Sbjct: 620 QLSDLKRGTEIVVCTPGRMIDVLTTSNGKITNLRRVTYVVIDEADRMFDLGFEPQICKII 679

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
             +   RQ ++FSAT    ++++++  L+ P    V         IE   +  +   S K
Sbjct: 680 QNIRPDRQLVMFSATFPKNVEQLAKRVLRKPIECIVGGRGQAGGNIEQ--IIEFMDESDK 737

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L  L Q   T  + +IF  ++    +L   L K G+    +HG +D + R   + +F
Sbjct: 738 LYKLLLLFQEWYTKGSILIFVEKQTEADDLFKELLKYGYKSFVLHGGMDPQDREFTIHDF 797

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K+G   +MVA+ + ARGLDI  +  V NF  PN  E+YIHRIGRTGRAG+ G A T    
Sbjct: 798 KKGIRTIMVATSVLARGLDIKHICLVINFSCPNHMEDYIHRIGRTGRAGQKGTAITFFTP 857

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPP-LEKIDIAQHNHARKNN 397
           +D    + +  L+EK    L   L       +EK+   +    R  N
Sbjct: 858 QDEHLANDLVYLLEKSEQQLPEKLKEYQKSFMEKVKAGEAKIYRNKN 904


>gi|315037650|ref|YP_004031218.1| RNA helicase [Lactobacillus amylovorus GRL 1112]
 gi|325956135|ref|YP_004286745.1| RNA helicase [Lactobacillus acidophilus 30SC]
 gi|312275783|gb|ADQ58423.1| putative RNA helicase [Lactobacillus amylovorus GRL 1112]
 gi|325332700|gb|ADZ06608.1| RNA helicase [Lactobacillus acidophilus 30SC]
 gi|327182943|gb|AEA31390.1| RNA helicase [Lactobacillus amylovorus GRL 1118]
          Length = 453

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 138/413 (33%), Positives = 217/413 (52%), Gaps = 14/413 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  + P V   +    + KPT +Q K IP +L    V   A TG+GKT ++++P+   
Sbjct: 5   FEDSRIKPAVQAGLKKIHFEKPTKVQEKVIPAMLSDLSVVVQAATGSGKTHAYLVPIFNE 64

Query: 63  LEKGRARVRMPRTLILEPTRELA---AQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +++    V+   TL   P+RELA    QVA    K     N ++A L GG   E Q +K 
Sbjct: 65  IDEAAHTVQAIITL---PSRELADQLYQVARELRK-ASGMNFSIAHLAGGTDRERQLEKY 120

Query: 120 ERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +     ++I TPGR+LD   +    ++ ++  VIDEAD  LDMGF+  I  + + +P   
Sbjct: 121 QNNTPQLVIATPGRLLDFVQKKVFAVDQVKTFVIDEADMTLDMGFLADIDQVAAKLPKDV 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q   FSAT+  +L      ++ +P +I ++ PS  A TI++  +   ++ ++K  L + L
Sbjct: 181 QIAAFSATIPVKLSNFLRKYMAHPDQIVIDNPSVIAPTIKNDLIDIGSK-NRKSVLYKLL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q  +   ++F N K+ V  L   L+ QG  V  IHG + +R R + L   ++G  Q 
Sbjct: 240 TMGQPYL--ALVFANTKQTVDELTKYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQYQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARGLDI  +  V N+++P   E  IHRIGRTGR G  G A TL+ +E++  I+
Sbjct: 298 VVASDLAARGLDIDGISLVINYEIPRDIEFVIHRIGRTGRNGLSGHAITLIREEEMNRIE 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            +EK+     D++      L P   K   ++ N   KN  +  K  G+ +++K
Sbjct: 358 ELEKM-GVHFDFVEIKNGELVP--RKHYRSRENRQSKNRKLDTKLVGYVKKEK 407


>gi|331667162|ref|ZP_08368027.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA271]
 gi|331065518|gb|EGI37411.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA271]
          Length = 353

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 108/270 (40%), Positives = 171/270 (63%), Gaps = 5/270 (1%)

Query: 100 NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159
           N+   ++ GG+    Q  KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRML
Sbjct: 2   NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRML 61

Query: 160 DMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-E 218
           DMGFI  I+ + + +P  RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ + +
Sbjct: 62  DMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQ 121

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
           H     +    +K  LL  ++  +   +  ++F   K    +L   L K G    AIHGN
Sbjct: 122 HVH---FVDKKRKRELLSHMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGN 177

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
             Q +R + L++FK G I+++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGR
Sbjct: 178 KSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGR 237

Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           A   G+A +LV  ++ K +  IEKL++K++
Sbjct: 238 AAATGEALSLVCVDEHKLLRDIEKLLKKEI 267


>gi|229545940|ref|ZP_04434665.1| ATP-dependent RNA helicase [Enterococcus faecalis TX1322]
 gi|307291362|ref|ZP_07571246.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|229308903|gb|EEN74890.1| ATP-dependent RNA helicase [Enterococcus faecalis TX1322]
 gi|306497593|gb|EFM67126.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|315030003|gb|EFT41935.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
          Length = 452

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 207/367 (56%), Gaps = 15/367 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P +  A+ + G+ +PT +Q K IP++ +   V G +QTG+GKT +F+LP++  
Sbjct: 7   FKQFQFQPFINEALAEKGFEEPTEVQEKLIPIIQKGKSVIGQSQTGSGKTHTFLLPLM-- 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
            +K +  +   + +I  P+RELA Q+    ++  +     + V+  +GG   + Q  KL+
Sbjct: 65  -DKVKPTIDEVQIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKLK 123

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   V+I TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I   +P   Q
Sbjct: 124 HQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKLQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+ ++L+   + +L+NP    +   +  +ETI++  ++T  + S +  ++ QLL
Sbjct: 184 MLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNQ--IIYQLL 241

Query: 240 QSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               T+ +    I+F N K+ V  +   L+ QG  V  IHG+I  R R +++   +    
Sbjct: 242 ----TIGHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDY 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VA+DLAARG+DI  V HV N +VP+  + +IHR+GRTGR G +G A TL +  D + 
Sbjct: 298 QYVVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEA 357

Query: 357 IDAIEKL 363
           I  IE+L
Sbjct: 358 ITQIEQL 364


>gi|300811569|ref|ZP_07092053.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497429|gb|EFK32467.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 453

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/364 (34%), Positives = 201/364 (55%), Gaps = 9/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  ++   +   G+ KPTP+Q K IP +L+   V   A TG+GKT ++++P+L  
Sbjct: 5   FTDTRLRSEIRQGLAKIGFTKPTPVQEKVIPAMLKGESVIVQAATGSGKTHAYLIPILNA 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKLE 120
           +++     R  + ++  P+RELA Q+     +   N   N+ +A L GG   + Q  + E
Sbjct: 65  IDED---ARYVQAIVTAPSRELADQLYRVARQLRDNSGLNIAIAHLAGGSDRDRQIARFE 121

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    ++I TPGR+LD  ++  LL++ ++  VIDEAD  LD+GF+  +  I + +P    
Sbjct: 122 QNKPQLVIATPGRLLDFADKKILLLDQVKNFVIDEADMTLDLGFLADVDKIAARLPKDVV 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSAT+  +L      ++  P+ I ++ P+  A TI++  +   ++  KK  + + L 
Sbjct: 182 MSAFSATIPVKLTNFLRKYMAKPEEIVIDNPAVIAPTIKNDLLDIGSKDRKKI-VYKLLT 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  +   ++F N K+ V  L   L KQG  V  IHG I +R R + L   + G  Q +
Sbjct: 241 MGQPYL--ALVFANTKQMVDELADYLTKQGLKVAKIHGGITERERKRTLREVRAGQYQYV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASDLAARG+D+P V  V N+++P   E  IHRIGRTGR G  G A TLV +E++  + A
Sbjct: 299 VASDLAARGIDLPGVNLVINYEIPKDLEFIIHRIGRTGRNGLPGHAVTLVREEEMNRVGA 358

Query: 360 IEKL 363
           +E +
Sbjct: 359 LEHM 362


>gi|195108365|ref|XP_001998763.1| GI24146 [Drosophila mojavensis]
 gi|193915357|gb|EDW14224.1| GI24146 [Drosophila mojavensis]
          Length = 829

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 115/357 (32%), Positives = 197/357 (55%), Gaps = 6/357 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  +++  +   GY  PTPIQ KTIPL+L+  DV  +A+TG+GKTA F++P+   
Sbjct: 40  FQSLGLGFELLKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++ R   +  R LIL PTRELA Q     +  G+   L   L++GG   ++Q   +   
Sbjct: 100 LQR-REPTKGARALILSPTRELAVQTYKFIKDLGRFMELKTILVLGGDSMDSQFSAIHTC 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR L       L +N+IE +V DEADR+ +MGF   +      +P +RQT++
Sbjct: 159 PDIIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQTVM 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQQLLQ 240
           FSAT+   L + +   L +P  I ++  S   +T+   F+      +Y+    LL+ ++ 
Sbjct: 219 FSATLPKLLVEFARAGLSDPVLIRLDVESKLPDTLSLKFLYCRPDDRYTALVVLLKYVIP 278

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      ++F   + +V  +   L + G S  +++ ++D  +R    + F    + +++
Sbjct: 279 QE---AQTVVFAGTQHHVELISFILTQAGISNTSVYSSLDPAARKINTAKFASKKVSVLI 335

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +D+AARG+DIP + +V N   P   + ++HR+GR  RAGR G A+++ + +D  H+
Sbjct: 336 VTDVAARGIDIPSLDYVVNLHFPGVPKLFVHRVGRCARAGRTGTAYSIFSTDDTAHL 392


>gi|322412436|gb|EFY03344.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 447

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 201/366 (54%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ + G+V PT +Q + IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDYHFKQYIQQALEEIGFVNPTEVQQRLIPIVNSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL--LIGGIPFEAQNKK 118
             L++ +A V++   +I  P+RELA Q+ D  ++  K+    + L   +GG     Q +K
Sbjct: 61  EKLDEAKAEVQV---VITAPSRELATQIFDACKQIAKHSPKDIRLTNYVGGTDKLRQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+     ++I TPGRI D    G L ++     V+DEAD  +DMGF+  +  I + +P +
Sbjct: 118 LKSSQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASLPKS 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  V+T  +  K   +L+ 
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLSNPVIEQIKTETVIADTIDNWLVSTKGR-DKNGQILEI 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   Q  M   ++F N K+   +L   L   G  V  IHG I  R R +I++  K+   +
Sbjct: 237 LKTMQPYM--AMLFVNTKERADDLHAFLVANGLKVAKIHGGIPPRERKRIMNQVKKLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 KELEKM 360


>gi|124361137|gb|ABN09109.1| Helicase, C-terminal [Medicago truncatula]
          Length = 413

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 198/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     V   + L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 102 LDYS---VTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V  +D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLSD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     ++ L  +++ L
Sbjct: 394 IQKFYNVLIEELPSNVAEL 412


>gi|289550671|ref|YP_003471575.1| ATP-dependent RNA helicase YqfR [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180203|gb|ADC87448.1| ATP-dependent RNA helicase YqfR [Staphylococcus lugdunensis
           HKU09-01]
          Length = 461

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/362 (34%), Positives = 193/362 (53%), Gaps = 11/362 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ A+ D  + KPT IQ + IP +L+R ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FETFNLESTMLDAIKDLNFEKPTEIQNRIIPKILKRTNLIGQSQTGTGKSHAFLLPLMHL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++     ++ P+ +++ PTRELA Q+    +   +   N+ V+L IGG   E   ++   
Sbjct: 66  ID---IDLQEPQVIVVAPTRELAQQLYQATQHLAQFKSNVKVSLFIGGTDIEKDKQRTHI 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
               +I TP RI D    G L ++    L+IDEAD M+D+G I  +  I + +  T    
Sbjct: 123 QPQFIIGTPTRINDLAMSGHLHVHLASYLIIDEADLMIDLGLIDQVDQIAARLNDTSNIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+   L      +L  P+ I V+  S   + IE   + T     K  A +++ LQ 
Sbjct: 183 VFSATIPKSLHPFLNKYLNQPEFIVVDNQSQNKKNIEFYLIPT-----KGTAKVEKTLQL 237

Query: 242 QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            D +     IIFCN ++N   L  SL   G  V  IHG +  R R + +   +    Q +
Sbjct: 238 IDMLNPYLCIIFCNSRENANELADSLNASGIKVGMIHGGLTPRERKQQMKRIRNLDFQFV 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +ASDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + +D  +I  
Sbjct: 298 IASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYRGVAITLYSPDDEHNISL 357

Query: 360 IE 361
           IE
Sbjct: 358 IE 359


>gi|242373863|ref|ZP_04819437.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
 gi|242348417|gb|EES40019.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
          Length = 447

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 132/383 (34%), Positives = 205/383 (53%), Gaps = 17/383 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ + IP +L+  ++ G +QTGTGK+ SF+LP++  
Sbjct: 6   FEHFNLDESLIKAVQDLNFEKPTEIQNRIIPRILKGTNLIGQSQTGTGKSHSFLLPLM-- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +K    V+ P+ +++ PTRELA Q+   A +  ++ ++  ++V L IGG   E   ++ 
Sbjct: 64  -QKIDVDVQEPQAIVVAPTRELAQQLFQAASHLSQFKQD--VSVKLFIGGTDIEKDKQRC 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R   ++I TP RI D    G L  +    L++DEAD M+D+G I  +  I + +     
Sbjct: 121 NRQPQLIIGTPTRINDLAQGGYLHAHLASNLIVDEADLMIDLGLIEDVDYIAARLDDEAH 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +FSAT+   LQ     +L  P+ +EV++ S   + IE   + T     K  A + + L
Sbjct: 181 IAVFSATIPKSLQPFLNKYLSQPEFVEVDSKSQNKKNIEFYLIPT-----KGTAKIDKTL 235

Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              D +     IIFCN ++N   L +SL  +G  V  IHG +  R R + +   +    Q
Sbjct: 236 SLIDMLNPYLCIIFCNSRENANELANSLNNEGIKVGMIHGGLTPRERKQQMKRIRNLDFQ 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++ASDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I
Sbjct: 296 YVIASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNI 355

Query: 358 DAIEK--LIEKKVDWLNGDLSSL 378
             IE      + VD  NG+L  +
Sbjct: 356 SLIEDKGYHFENVDIKNGELKPI 378


>gi|321252954|ref|XP_003192576.1| RNA helicase [Cryptococcus gattii WM276]
 gi|317459045|gb|ADV20789.1| RNA helicase, putative [Cryptococcus gattii WM276]
          Length = 615

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/367 (34%), Positives = 196/367 (53%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL  +++  +  AG+ +P+PIQ + IP+ L   D+   A+ GTGKTASF++P L  
Sbjct: 38  FEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNR 97

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +    + ++    LIL PTRELA Q +   +  G +  NL V +  GG        +L++
Sbjct: 98  INTSLSHIQ---ALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQ 154

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD  ++G   +N   I V+DEAD++L   F+P I+   +L P  RQ +
Sbjct: 155 PVHILVGTPGRILDLGSKGIAGLNKCSIFVMDEADKLLSEDFMPVIEQTLALCPQERQVM 214

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++  +  +  P  I +     T + +   +   Y + S+K   L  L  S
Sbjct: 215 LFSATFPWTVKEFKDQHMVQPYEINLMD-ELTLKGVTQYYA--YVEESQKVHCLNTLF-S 270

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S    H  + Q  R ++  +F+ G  + +V 
Sbjct: 271 KLQINQSIIFCNSTNRVELLAKKVTELGYSCFYSHAKMQQAHRNRVFHDFRNGMTRNLVC 330

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE+Y+HRIGR+GR G  G A +L+  ED  ++  IE
Sbjct: 331 SDLLTRGIDIQAVNVVINFDFPRTAESYLHRIGRSGRFGHLGLAISLLTLEDRHNLYRIE 390

Query: 362 KLIEKKV 368
             +  ++
Sbjct: 391 SELGTEI 397


>gi|2500516|sp|Q40470|IF4A7_TOBAC RecName: Full=Eukaryotic initiation factor 4A-7; Short=eIF-4A-7;
           AltName: Full=ATP-dependent RNA helicase eIF4A-7
 gi|485949|emb|CAA55738.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 199/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+      +    L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 102 LDYSLVECQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V K+D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVIKDDERMLSD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     ++ L  +++ L
Sbjct: 394 IQRFYNVVIEELPANVADL 412


>gi|312196292|ref|YP_004016353.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
 gi|311227628|gb|ADP80483.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
          Length = 530

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 119/359 (33%), Positives = 192/359 (53%), Gaps = 5/359 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL  ++V A+ + G   P P+Q  T+P VL   +V G A+TG+GKT  F LPML  
Sbjct: 79  FEAAGLPARLVRALAERGISTPFPVQAATLPDVLAGENVLGRAKTGSGKTLGFGLPMLAR 138

Query: 63  LE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  +G A    PR LIL PTRELA QV+D  +   ++  L +  + GG     Q   + R
Sbjct: 139 LAGRGPATPLRPRGLILVPTRELAQQVSDALDPLSRSVGLWLRPVYGGTSISRQISMMRR 198

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LD   RG   ++ +E+ V+DEAD M D+GF+P +++I        Q L
Sbjct: 199 GVHIVVATPGRLLDLVERGACQLDEVEVTVLDEADYMCDLGFLPAVRSILDATSPAAQRL 258

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  E++ +   +L  P  + V++ +S   T+    +    +YS+    L+ +   
Sbjct: 259 MFSATLDREVEVLVREYLPEPVLVAVDSENSQVTTLRRHALEASDRYSQ----LEVVTAL 314

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F   +++  ++   L K G     +HG + Q +R + L+ F +GT +++VA
Sbjct: 315 TGGQGRTLVFVRTQRDADHVAADLTKAGVPAEPLHGGLPQGARTRALAGFADGTRRVLVA 374

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +D+AARG+ + DV  V +   P  ++ Y HR GRT RAG  G    +    D   + A+
Sbjct: 375 TDVAARGIHVDDVRLVVHMGPPEDSKTYQHRGGRTARAGAEGADVLVTLAADRGKVRAM 433


>gi|315658166|ref|ZP_07911038.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           lugdunensis M23590]
 gi|315496495|gb|EFU84818.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           lugdunensis M23590]
          Length = 447

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 126/362 (34%), Positives = 193/362 (53%), Gaps = 11/362 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ A+ D  + KPT IQ + IP +L+R ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FETFNLESTMLDAIKDLNFEKPTEIQNRIIPKILKRTNLIGQSQTGTGKSHAFLLPLMHL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121
           ++     ++ P+ +++ PTRELA Q+    +   +   N+ V+L IGG   E   ++   
Sbjct: 66  ID---IDLQEPQVIVVAPTRELAQQLYQATQHLAQFKSNVKVSLFIGGTDIEKDKQRTHI 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
               +I TP RI D    G L ++    L+IDEAD M+D+G I  +  I + +  T    
Sbjct: 123 QPQFIIGTPTRINDLAMSGHLHVHLASYLIIDEADLMIDLGLIDQVDQIAARLNDTSNIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+   L      +L  P+ I V+  S   + IE   + T     K  A +++ LQ 
Sbjct: 183 VFSATIPKSLHPFLNKYLNQPEFIVVDNQSQNKKNIEFYLIPT-----KGTAKVEKTLQL 237

Query: 242 QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            D +     IIFCN ++N   L  SL   G  V  IHG +  R R + +   +    Q +
Sbjct: 238 IDILNPYLCIIFCNSRENANELADSLNASGIKVGMIHGGLTPRERKQQMKRIRNLDFQFV 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +ASDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + +D  +I  
Sbjct: 298 IASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYRGVAITLYSPDDEHNISL 357

Query: 360 IE 361
           IE
Sbjct: 358 IE 359


>gi|302821639|ref|XP_002992481.1| hypothetical protein SELMODRAFT_30997 [Selaginella moellendorffii]
 gi|300139683|gb|EFJ06419.1| hypothetical protein SELMODRAFT_30997 [Selaginella moellendorffii]
          Length = 641

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 204/368 (55%), Gaps = 15/368 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +  A LG+S ++V  + D G     PIQ       ++  D+   A+TGTGKT +F +P++
Sbjct: 21  LAIAGLGVSQEIVGHLADRGITHLFPIQRAVFQPAMKGVDLIARAKTGTGKTLAFGIPIM 80

Query: 61  TILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             + + R++ +      P  L+L PTRELA QV   F + GK   L    + GG+   +Q
Sbjct: 81  DRIYRSRSKSQRRSFRGPAALVLAPTRELAKQVETEFMESGKE--LATVCVYGGVSIMSQ 138

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L RG DV + TPGRI+D   +G L ++ +E +V+DEAD+ML +GF   ++ I   +P
Sbjct: 139 KRLLSRGVDVAVGTPGRIIDLLEQGCLDLSQVECMVLDEADQMLAVGFEEDVEKIMEQLP 198

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST--AETIEHCFVATYAQYSKKCA 233
             RQ +LFSATM   +QK+S  FL  P  I++   S    AE I+   V T     +K  
Sbjct: 199 EKRQNMLFSATMPGWVQKLSRKFLNKPLTIDLVGESDEKLAEGIKLYAVQTSQAAKRK-- 256

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +L  ++         I+F   K++   +  ++ +      A+HG+I Q  R K L+ F+E
Sbjct: 257 ILSDVITVYGKGGKTIVFTQTKRDAEEVSMAMNRT-LGCEALHGDIAQFQREKTLAAFRE 315

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+D+AARGLDI DV  + ++D+P  +E ++HR GRTGRAG+ G A    + ++
Sbjct: 316 GRFLILVATDVAARGLDITDVDLIIHYDLPRDSETFVHRSGRTGRAGKDGSALVFFSPQE 375

Query: 354 ---IKHID 358
              +KH +
Sbjct: 376 RRILKHFE 383


>gi|307189121|gb|EFN73577.1| Probable ATP-dependent RNA helicase DDX10 [Camponotus floridanus]
          Length = 791

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 126/353 (35%), Positives = 203/353 (57%), Gaps = 10/353 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL LS   +  +++  Y+  T IQ ++I L LQ +D+ G A+TG+GKT +F++P+L I
Sbjct: 40  FSDLPLSRITLKGLVENNYIDMTDIQRQSIGLALQGNDILGAAKTGSGKTLAFLIPVLEI 99

Query: 63  LE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  K   R+     LI+ PTRELA Q+ +   K G+ ++++  L+IGG   + + K++++
Sbjct: 100 LYCKQWTRLDGVGALIITPTRELAYQIYETLRKVGRYHDVSAGLIIGGKDLKFERKRMDQ 159

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             +V+ICTPGR+L H +   L    N++ILV+DEADR LDMGF   +  I + +P  RQT
Sbjct: 160 -CNVVICTPGRLLQHMDENPLFDCVNMQILVLDEADRCLDMGFEKTMNCIIANLPPKRQT 218

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSS--TAETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT T  ++ ++   L++P  + V+  S+  T E ++  ++        K A+L   
Sbjct: 219 LLFSATQTKSVKDLARLSLKDPLYVSVHEYSTHTTPENLQQNYIV--CSLEDKMAMLWSF 276

Query: 239 LQSQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +++    K  + F  C Q K +  +   L + G S+ A++G + Q  RM I  +F +   
Sbjct: 277 IRNHLKQKIIVFFSSCKQVKYIYEVFCRL-RPGVSLLALYGTLHQMKRMSIYESFCKKQY 335

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            ++ A+D+AARGLD P V  V   D P     YIHR GRT R    G++  ++
Sbjct: 336 AVLFATDIAARGLDFPAVNWVLQMDCPEDVNAYIHRAGRTARFQSGGESLLVL 388


>gi|241896593|ref|ZP_04783889.1| ATP-dependent RNA helicase [Weissella paramesenteroides ATCC 33313]
 gi|241870185|gb|EER73936.1| ATP-dependent RNA helicase [Weissella paramesenteroides ATCC 33313]
          Length = 452

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 128/385 (33%), Positives = 207/385 (53%), Gaps = 19/385 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P++  A+    + +PT +Q + IP++LQ   V G +QTG+GKT +F++P+   
Sbjct: 4   FTDYNLRPEIYEALTAIHFKQPTTVQSRLIPVILQGRSVVGQSQTGSGKTHTFLVPIFQQ 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT----VALLIGGIPFEAQNKK 118
            +    +V+    +I  P+RELA Q+ +  ++    +       ++L +GG+    Q  +
Sbjct: 64  YDATNQKVQ---AVITTPSRELAQQIYEAAKQLASTFTEDTQPRISLYVGGMDKSRQIHQ 120

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+ +   ++I TPGRI D +  G+L ++    LV+DEAD  LD+GF+P +  I S +P  
Sbjct: 121 LQNKQPQIVIGTPGRIKDLYQAGELDIHTATTLVVDEADMTLDLGFLPDVDAIASAMPED 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L+FSAT+  +LQ   + +L NP   E+ + +  A TI++  V T  +   K  L+  
Sbjct: 181 LKMLVFSATIPQKLQPFLKKYLSNPVIEEIPSETVIAPTIKNILVGTKGE--TKDTLVYN 238

Query: 238 LLQSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LL    TM N    ++F N K     L  SL  +G  V  IHG I  R R + +   +  
Sbjct: 239 LL----TMGNPYLALVFTNTKTRARELTKSLRSRGLKVAEIHGGIQPRERKRTMQQIQHL 294

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             Q +VA+DLAARG+DIP V  + N  +P   E +IHR+GRTGR G  G A T+   ++ 
Sbjct: 295 DYQYVVATDLAARGIDIPGVSLIINDGIPTELEFFIHRVGRTGRNGMSGTAITIYNPDEE 354

Query: 355 KHIDAIEKLIEK--KVDWLNGDLSS 377
             +  +E +  K   + + +G+L S
Sbjct: 355 DRVQMVENMGVKFEPMTYAHGELQS 379


>gi|229550132|ref|ZP_04438857.1| ATP-dependent RNA helicase [Enterococcus faecalis ATCC 29200]
 gi|293383060|ref|ZP_06628978.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|293387787|ref|ZP_06632331.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|307271133|ref|ZP_07552416.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|307273339|ref|ZP_07554584.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|307277485|ref|ZP_07558577.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|307288127|ref|ZP_07568137.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|312900642|ref|ZP_07759939.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|312904121|ref|ZP_07763289.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|312907351|ref|ZP_07766342.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|312909967|ref|ZP_07768815.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|312952381|ref|ZP_07771256.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|229304718|gb|EEN70714.1| ATP-dependent RNA helicase [Enterococcus faecalis ATCC 29200]
 gi|291079725|gb|EFE17089.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|291082857|gb|EFE19820.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|306500863|gb|EFM70181.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|306505750|gb|EFM74928.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|306509866|gb|EFM78891.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|306512631|gb|EFM81280.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|310626379|gb|EFQ09662.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|310629765|gb|EFQ13048.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|310632597|gb|EFQ15880.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|311289925|gb|EFQ68481.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|311292123|gb|EFQ70679.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|315027381|gb|EFT39313.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
 gi|315033779|gb|EFT45711.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
 gi|315036865|gb|EFT48797.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
 gi|315145689|gb|EFT89705.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
 gi|315147874|gb|EFT91890.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
 gi|315150649|gb|EFT94665.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
 gi|315153344|gb|EFT97360.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
 gi|315155879|gb|EFT99895.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
 gi|315157954|gb|EFU01971.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
 gi|315160224|gb|EFU04241.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
 gi|315164257|gb|EFU08274.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
 gi|315166649|gb|EFU10666.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
 gi|315170067|gb|EFU14084.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
 gi|315174457|gb|EFU18474.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
 gi|315578466|gb|EFU90657.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
 gi|327535018|gb|AEA93852.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           faecalis OG1RF]
          Length = 452

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 207/367 (56%), Gaps = 15/367 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P +  A+ + G+ +PT +Q K IP++ +   V G +QTG+GKT +F+LP++  
Sbjct: 7   FKQFQFQPFINEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLM-- 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
            +K +  +   + +I  P+RELA Q+    ++  +     + V+  +GG   + Q  KL+
Sbjct: 65  -DKVKPTIDEVQIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKLK 123

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   V+I TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I   +P   Q
Sbjct: 124 HQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKLQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+ ++L+   + +L+NP    +   +  +ETI++  ++T  + S +  ++ QLL
Sbjct: 184 MLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNQ--IIYQLL 241

Query: 240 QSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               T+ +    I+F N K+ V  +   L+ QG  V  IHG+I  R R +++   +    
Sbjct: 242 ----TIGHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDY 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VA+DLAARG+DI  V HV N +VP+  + +IHR+GRTGR G +G A TL +  D + 
Sbjct: 298 QYVVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEA 357

Query: 357 IDAIEKL 363
           I  IE+L
Sbjct: 358 ITQIEQL 364


>gi|258566537|ref|XP_002584013.1| hypothetical protein UREG_06980 [Uncinocarpus reesii 1704]
 gi|237907714|gb|EEP82115.1| hypothetical protein UREG_06980 [Uncinocarpus reesii 1704]
          Length = 512

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 194/362 (53%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P  
Sbjct: 51  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIP-- 108

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE+   ++   + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 109 -TLERTNPKISKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLN 167

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 168 DTVHIIVGTPGRILDLASKGVADLSECATFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 227

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  ++NP  I +     T   I   +   + +  +K   L  L  
Sbjct: 228 MLFSATFPMIVKSFKDKHMRNPYEINL-MDELTLRGITQYYA--FVEERQKVHCLNTLF- 283

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q++R ++  +F+ G  + +V
Sbjct: 284 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMFQQNRNRVFHDFRNGVCRNLV 343

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 344 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLIGWEDRYNLYKI 403

Query: 361 EK 362
           E+
Sbjct: 404 EQ 405


>gi|123477017|ref|XP_001321678.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121904509|gb|EAY09455.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 521

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 131/380 (34%), Positives = 203/380 (53%), Gaps = 13/380 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L  +++  + +  +  PTPIQ  +IP+ L+ +D+ GIA+TG+GKTASF++P L  
Sbjct: 87  FEELNLPQEIMEVIKENNWTNPTPIQSLSIPIGLKGNDMVGIAKTGSGKTASFLIPALMH 146

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   R  +    P  L+L PTRELA Q  +   ++          + GG     Q  KL 
Sbjct: 147 ISAQRKISENDGPIVLVLSPTRELALQTDEVAAQFCVKMGYKHVCIYGGEDRHRQINKLR 206

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++  TPGR++D    G    N    LV+DEADRMLDMGF P I+ I + +   R+T
Sbjct: 207 FHPEIVTATPGRLIDFLQSGVFNPNRANFLVLDEADRMLDMGFEPQIRAIIASLTKDRET 266

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETI-EHCFVATYAQYSKKCALLQQL 238
            +FSAT   E+++++ +FL NP  + V     +T E I ++  +    +  +KC  + + 
Sbjct: 267 FMFSATWPKEIRQLASDFLSNPIHMHVGGEELATNERIQQNVLLLQEHEKGEKCVEILKE 326

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG-TIQ 297
            QS    K  IIF   K+ V  L   L+ +     +IHG+  Q+ R+  L  FK   T  
Sbjct: 327 NQS----KKIIIFAKTKRTVQQLSDFLKSKSIRCLSIHGDKTQQERVVALDKFKNARTGG 382

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---- 353
           ++VA+D+AARGLD+ D+  V N+D P   E+Y+HRIGRT R  + G A T    E+    
Sbjct: 383 VLVATDVAARGLDVTDIDLVLNYDFPGDIEDYVHRIGRTARGEKTGVAITFFTDENRFLA 442

Query: 354 IKHIDAIEKLIEKKVDWLNG 373
              ++ I+   +   DWL+ 
Sbjct: 443 SDLVEVIKNSAQVPPDWLSA 462


>gi|84994752|ref|XP_952098.1| ATP-dependent RNA helicase [Theileria annulata strain Ankara]
 gi|65302259|emb|CAI74366.1| ATP-dependent RNA helicase, putative [Theileria annulata]
          Length = 416

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 121/367 (32%), Positives = 196/367 (53%), Gaps = 7/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L  HD+   A+ GTGKTA+FV+P+L 
Sbjct: 44  EFEDYFLKRELLMGIFEKGFERPSPIQEESIPVALAGHDILARAKNGTGKTAAFVIPLLQ 103

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +++    LIL PTRELA Q +   ++ GK   +   +  GG        +L +
Sbjct: 104 KLDTSEPQIQ---GLILLPTRELALQTSAVVKELGKYLEVQCMVSTGGTSLRNDIMRLYK 160

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L  TPGRILD  N+G  +++    +V+DEAD+ML   F P ++ +   +P  +Q +
Sbjct: 161 PVHILCGTPGRILDLTNKGVAVLSQCATVVLDEADKMLSQEFCPIVEALLKFLPTEKQII 220

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    +Q   E +L N   I +     T + I   +   Y +  +K   L  L  +
Sbjct: 221 LYSATFPASVQAFKEQYLPNAHEINL-MDDLTLKGITQFY--AYVEERQKVHCLSTLF-A 276

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + GFS   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 277 RLQINQAIIFCNSVVRVELLAKKITELGFSCFYIHAKMMQSHRNRVFHDFRNGACRCLVS 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D   V  V NFD P  +  Y+HRIGR+GR G  G A  LV ++D + +  IE
Sbjct: 337 SDLFTRGIDFRFVNVVVNFDFPKNSSTYLHRIGRSGRFGHLGLAINLVTEQDKESLFKIE 396

Query: 362 KLIEKKV 368
           + +  ++
Sbjct: 397 EELATEI 403


>gi|170086159|ref|XP_001874303.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651855|gb|EDR16095.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 439

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/343 (38%), Positives = 190/343 (55%), Gaps = 32/343 (9%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK---------GRAR 69
           AG+ +PTPIQ  T P  L+  DV  I+ T +GKT +F +P L+ L K         G + 
Sbjct: 24  AGFKEPTPIQACTWPPALEGRDVTNIS-TNSGKTLAFGIPALSRLIKSISKSSSKSGNST 82

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD----- 124
           + +   L+L PTRELA Q  D     GK + +    + GG+P + Q K L+  +      
Sbjct: 83  ISI---LVLAPTRELALQTHDTLAALGKPFGIASVAVFGGVPKDPQVKMLKNASKAKDGM 139

Query: 125 ---VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQ 179
              +++ TPGRILD    G   ++ ++ LV+DEADRMLD GF   I+NI S    T  RQ
Sbjct: 140 TTRIIVGTPGRILDLMQEGVCDLSGVDYLVLDEADRMLDKGFENDIRNIISSTKPTAERQ 199

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK----CALL 235
           T++FSAT  + +++++  F  NP R+ V +   TA +     VA +     K     ALL
Sbjct: 200 TMMFSATWPEAVRRLASTFQTNPVRVTVGSDDLTANSRVEQSVAVFDDSRSKDQRLLALL 259

Query: 236 QQLLQSQDTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           Q+L   + + K       +IF   KK    +   L+  G+SV A+HG++ Q +R++ L N
Sbjct: 260 QKLSHKKTSTKGASDSLILIFALYKKEASRVEQMLKYNGYSVGALHGDMSQPARLETLEN 319

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
           FK GT  LMVA+D+AARGLDIP+VG V N+  P   E+YIHRI
Sbjct: 320 FKNGTTGLMVATDVAARGLDIPNVGAVINYTFPLTIEDYIHRI 362


>gi|255975964|ref|ZP_05426550.1| helicase [Enterococcus faecalis T2]
 gi|255968836|gb|EET99458.1| helicase [Enterococcus faecalis T2]
          Length = 449

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 207/367 (56%), Gaps = 15/367 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P +  A+ + G+ +PT +Q K IP++ +   V G +QTG+GKT +F+LP++  
Sbjct: 4   FKQFQFQPFINEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLM-- 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
            +K +  +   + +I  P+RELA Q+    ++  +     + V+  +GG   + Q  KL+
Sbjct: 62  -DKVKPTIDEVQIVITAPSRELANQIYQEAQQLARFSQPEIQVSNFVGGTDKQRQLNKLK 120

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   V+I TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I   +P   Q
Sbjct: 121 HQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+ ++L+   + +L+NP    +   +  +ETI++  ++T  + S +  ++ QLL
Sbjct: 181 MLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNQ--IIYQLL 238

Query: 240 QSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               T+ +    I+F N K+ V  +   L+ QG  V  IHG+I  R R +++   +    
Sbjct: 239 ----TIGHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDY 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VA+DLAARG+DI  V HV N +VP+  + +IHR+GRTGR G +G A TL +  D + 
Sbjct: 295 QYVVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEA 354

Query: 357 IDAIEKL 363
           I  IE+L
Sbjct: 355 ITQIEQL 361


>gi|17537549|ref|NP_496973.1| hypothetical protein Y54G11A.3 [Caenorhabditis elegans]
 gi|4008449|emb|CAA22456.1| C. elegans protein Y54G11A.3, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 504

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 122/374 (32%), Positives = 201/374 (53%), Gaps = 16/374 (4%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
            G +  ++  +   G+ KP+PIQ +  PL+L   D  G++QTG+GKT +F+LP L  ++ 
Sbjct: 89  FGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDA 148

Query: 66  GRARVR--------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             A+           P  L+L PTRELA Q+    +KY  N   +V L  GG   E Q +
Sbjct: 149 QLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKYSYNGYKSVCLYGGGSRPE-QVE 207

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
               G +++I TPGR+ D  N G + + ++  +V+DEADRMLDMGF   I+ I   +   
Sbjct: 208 ACRGGVEIVIATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEVAIRRILFEIRPD 267

Query: 178 RQTLLFSATMTDELQKVSENFLQNP-----KRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           R   L SAT  + ++K+++ + +         +++ +  S  +  E  FV   +++ + C
Sbjct: 268 RLVALTSATWPEGVRKLTDKYTKEAVMAVNGSLDLTSCKSVTQFFE--FVPHDSRFLRVC 325

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            ++  L  +       IIF   K    +L      +G +   +HG   Q  R   L+  +
Sbjct: 326 EIVNFLTAAHGQNYKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLR 385

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G +Q++VA+DLA+RG+D+PD+ HV N+D P   E Y+HR+GRTGRAGR G+A + +   
Sbjct: 386 SGEVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFLWWN 445

Query: 353 DIKHIDAIEKLIEK 366
           D  + + + +++EK
Sbjct: 446 DRSNFEGLIQILEK 459


>gi|330942530|gb|EGH45114.1| helicase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 277

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 114/280 (40%), Positives = 165/280 (58%), Gaps = 10/280 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L       +  R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A +  K +
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
           LL  L+ +    +  ++F   K     L   L+K G +  
Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAV 277


>gi|303242448|ref|ZP_07328930.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302590033|gb|EFL59799.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 386

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 203/365 (55%), Gaps = 11/365 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++GL+P +V A+       PT IQ + IP  L+  D+   + TGTGKT +++LP+  
Sbjct: 4   SFENMGLNPTLVTALKKENITIPTDIQQRVIPEALKNKDIVAQSGTGTGKTLAYLLPLF- 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV--ALLIGGIPFEAQNKKL 119
             EK  A ++  + +IL PT ELA Q+    E+  +N ++ +    +IG +  + Q +KL
Sbjct: 63  --EKVNAELKEMQAIILCPTHELAVQIMRQIERLSQNSDIKIKGTTIIGNVNIDRQIEKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +++ TPGRIL+   + K+  + I+ ++IDEADR++D     +++ +       RQ
Sbjct: 121 KEKPHIIVGTPGRILELIKKRKISAHTIKTIIIDEADRLMDENNTEFVKAVIKSTLKERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQL 238
            + +SAT+   ++      ++  + I V    S  +TI H CF+A   +   K  +L++L
Sbjct: 181 VMAYSATIPKRVETGIIEQMKEAQVIRVEEKLSVPDTISHMCFLA---EKRDKIEVLRKL 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHS-LEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  +  K  I+F N + N + +  S L+  G  V  IHG   +  R K +  FK G IQ
Sbjct: 238 VRILEPQK-AIVFVNNQGNEIEIFTSKLKYHGLGVEGIHGTTHKLERKKAMEEFKSGKIQ 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L++ASD+AARGL I  V H+FN D+P   + Y+HR+GR+GR G  G A ++  K +++ I
Sbjct: 297 LLIASDIAARGLHIEGVTHIFNIDIPEDVKAYVHRVGRSGRNGNTGMAVSIATKRELELI 356

Query: 358 DAIEK 362
              EK
Sbjct: 357 KKYEK 361


>gi|302817066|ref|XP_002990210.1| hypothetical protein SELMODRAFT_30996 [Selaginella moellendorffii]
 gi|300142065|gb|EFJ08770.1| hypothetical protein SELMODRAFT_30996 [Selaginella moellendorffii]
          Length = 640

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 203/365 (55%), Gaps = 15/365 (4%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
           A LG+S ++V  + D G     PIQ       ++  D+   A+TGTGKT +F +P++  +
Sbjct: 6   AGLGVSQEIVGHLADRGITHLFPIQRAVFQPAMKGVDLIARAKTGTGKTLAFGIPIMDRI 65

Query: 64  EKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            + R++ +      P  L+L PTRELA QV   F + GK   L    + GG+   +Q + 
Sbjct: 66  YRSRSKSQRRSFRGPAALVLAPTRELAKQVETEFMESGKE--LATVCVYGGVSIMSQKRL 123

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG DV + TPGRI+D   +G L ++ +E +V+DEAD+ML +GF   ++ I   +P  R
Sbjct: 124 LSRGVDVAVGTPGRIIDLLEQGCLDLSQVECMVLDEADQMLAVGFEEDVEKIMEQLPEKR 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST--AETIEHCFVATYAQYSKKCALLQ 236
           Q +LFSATM   +QK+S  FL  P  I++   S    AE I+   V T     +K  +L 
Sbjct: 184 QNMLFSATMPGWVQKLSRKFLNKPLTIDLVGESDEKLAEGIKLYAVQTSQAAKRK--ILS 241

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++         I+F   K++   +  ++ +      A+HG+I Q  R K L+ F+EG  
Sbjct: 242 DVITVYGKGGKTIVFTQTKRDAEEVSMAMNRT-LGCEALHGDIAQFQREKTLAAFREGRF 300

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED--- 353
            ++VA+D+AARGLDI DV  + ++D+P  +E ++HR GRTGRAG+ G A    + ++   
Sbjct: 301 LILVATDVAARGLDITDVDLIIHYDLPRDSETFVHRSGRTGRAGKDGSALVFFSPQERRI 360

Query: 354 IKHID 358
           +KH +
Sbjct: 361 LKHFE 365


>gi|68069123|ref|XP_676472.1| RNA helicase-1 [Plasmodium berghei strain ANKA]
 gi|56496186|emb|CAH99280.1| RNA helicase-1, putative [Plasmodium berghei]
          Length = 393

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 125/352 (35%), Positives = 194/352 (55%), Gaps = 14/352 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL+ K++  +   G+ KP+ IQ + I  +L+ +D  G AQ+GTGKTA+FV+  L +
Sbjct: 25  FDALGLNEKLLRGIYSYGFEKPSAIQQRGIKPILKGYDTIGQAQSGTGKTATFVISSLQL 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +       +    LIL PTRELA Q+       G    +     +GG        KL++G
Sbjct: 85  INYDYVACQ---ALILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDIDKLKQG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPFTRQTL 181
             +++ TPGR+ D  ++  L ++ +++ ++DEAD ML  GF   I  +   LVP   Q  
Sbjct: 142 VHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVP-DIQVA 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQL 238
           LFSATM  E+ +++  F+++PK I V     T E I+  +VA   +  K    C L + L
Sbjct: 201 LFSATMPQEILELTTRFMRDPKTILVKKDELTLEGIQF-YVAVEKEEWKLDTLCDLYETL 259

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                T+   II+CN +K V  L   +  + F+V  +HG++DQ+ R  I+  F+ G+ ++
Sbjct: 260 -----TITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRV 314

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           +V +DL ARG+D+  V  V N+D+P   + YIHRIGR+GR GR G A   V 
Sbjct: 315 LVTTDLLARGIDVQQVSLVINYDLPCSPDTYIHRIGRSGRFGRKGVAINFVT 366


>gi|256853014|ref|ZP_05558384.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
 gi|256711473|gb|EEU26511.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
          Length = 449

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 207/367 (56%), Gaps = 15/367 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P +  A+ + G+ +PT +Q K IP++ +   V G +QTG+GKT +F+LP++  
Sbjct: 4   FKQFQFQPFINEALAEKGFEEPTEVQEKLIPIIQKGKSVIGQSQTGSGKTHTFLLPLM-- 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
            +K +  +   + +I  P+RELA Q+    ++  +     + V+  +GG   + Q  KL+
Sbjct: 62  -DKVKPTIDEVQIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKLK 120

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   V+I TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I   +P   Q
Sbjct: 121 HQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+ ++L+   + +L+NP    +   +  +ETI++  ++T  + S +  ++ QLL
Sbjct: 181 MLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNQ--IIYQLL 238

Query: 240 QSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               T+ +    I+F N K+ V  +   L+ QG  V  IHG+I  R R +++   +    
Sbjct: 239 ----TIGHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDY 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VA+DLAARG+DI  V HV N +VP+  + +IHR+GRTGR G +G A TL +  D + 
Sbjct: 295 QYVVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEA 354

Query: 357 IDAIEKL 363
           I  IE+L
Sbjct: 355 ITQIEQL 361


>gi|119492517|ref|XP_001263624.1| eukaryotic translation initiation factor 4, putative [Neosartorya
           fischeri NRRL 181]
 gi|134034146|sp|A1D7N3|IF4A_NEOFI RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|119411784|gb|EAW21727.1| eukaryotic translation initiation factor 4, putative [Neosartorya
           fischeri NRRL 181]
          Length = 398

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 213/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P+++  +   G+ +P+ IQ + I  +++ +DV   AQ+GTGKTA+F    ++ 
Sbjct: 27  FDSMELKPELLRGIYAYGFERPSAIQQRAILPIIKGNDVIAQAQSGTGKTATF---SISA 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    V+  + LIL PTRELA Q+       G   N+     IGG       K L+ G
Sbjct: 84  LQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTNVREDMKALQEG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +N+++ ++DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 144 PQVVVGTPGRVQDMIQRRVLRTDNLKMFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 204 LSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A+
Sbjct: 263 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIAT 321

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 322 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 381

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 382 FYSTQIEEMPMNVADL 397


>gi|255559531|ref|XP_002520785.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223539916|gb|EEF41494.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 592

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 131/381 (34%), Positives = 217/381 (56%), Gaps = 28/381 (7%)

Query: 3   FADL--GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           FADL   LS  VV A+  AG+   TP+Q  TIPL+ +  DV   A TG+GKT +FV+P++
Sbjct: 18  FADLHPPLSESVVHALTQAGFEYCTPVQAATIPLLCRYKDVAVDAATGSGKTLAFVVPLV 77

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNK 117
            IL +  + +++ + +  IL PTREL++Q+ +  + + +   N+   LL+GG+  +A  K
Sbjct: 78  EILRRLSSPIKLHQVMGIILSPTRELSSQIYNVAQPFIETLSNVKSMLLVGGVDVKADVK 137

Query: 118 KLER-GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           K+E  GA++LI TPGR+ D   R  +L   N+E+L++DEADR+LDMGF   I +I S +P
Sbjct: 138 KIEEEGANILIGTPGRLFDIMERVDILDFRNLEVLILDEADRLLDMGFQKQITSIISRLP 197

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R+T LFSAT T+ ++++++  L+NP R+EV    +  +++     +  +       L 
Sbjct: 198 KLRRTGLFSATQTEAVEELAKAGLRNPVRVEVR---AQTKSLNESASSQLSSSKTPSGLQ 254

Query: 236 QQLLQSQDTMKNGIIFC----NQKKNVV---NLCHSLEKQG-----------FSVCAIHG 277
            + L+ +  MK   +      N+ K ++     C  ++  G           FS+  +HG
Sbjct: 255 LEYLECEADMKPSHLVSLLNKNKSKKIIVYFMTCACVDYWGVVLPRLTALKDFSLIPLHG 314

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
            + Q +R K L++F   T  +++ +D+AARGLDIP V  +  +D P     +IHR+GRT 
Sbjct: 315 KMKQTARDKALASFTSLTSGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTA 374

Query: 338 RAGRHGKAFTLVAKEDIKHID 358
           R GR G A   +  ++  +++
Sbjct: 375 RLGRQGSAIVFLLPKEEAYVE 395


>gi|257082654|ref|ZP_05577015.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
 gi|256990684|gb|EEU77986.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
          Length = 449

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 207/367 (56%), Gaps = 15/367 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P +  A+ + G+ +PT +Q K IP++ +   V G +QTG+GKT +F+LP++  
Sbjct: 4   FKQFQFQPFINEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLM-- 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
            +K +  +   + +I  P+RELA Q+    ++  +     + V+  +GG   + Q  KL+
Sbjct: 62  -DKVKPTIDEVQIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKLK 120

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   V+I TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I   +P   Q
Sbjct: 121 HQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+ ++L+   + +L+NP    +   +  +ETI++  ++T  + S +  ++ QLL
Sbjct: 181 MLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNQ--IIYQLL 238

Query: 240 QSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               T+ +    I+F N K+ V  +   L+ QG  V  IHG+I  R R +++   +    
Sbjct: 239 ----TIGHPYLAIVFANTKQTVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDY 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VA+DLAARG+DI  V HV N +VP+  + +IHR+GRTGR G +G A TL +  D + 
Sbjct: 295 QYVVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEA 354

Query: 357 IDAIEKL 363
           I  IE+L
Sbjct: 355 ITQIEQL 361


>gi|322504299|emb|CAM41648.2| putative ATP-dependent DEAD/H RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 602

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 136/379 (35%), Positives = 212/379 (55%), Gaps = 20/379 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           ++F+DL     +  A +DAG+ +PTPIQ  + P++L   D+ G+A+TG+GKT +F++P  
Sbjct: 145 LEFSDLVAPDAIHQAFMDAGFQRPTPIQSVSWPVLLNSRDIVGVAKTGSGKTMAFMIPAA 204

Query: 60  LTI-----LEKGRARVRMPRTLILEPTRELAAQVADNFEK-YGKNYNLTVALLIGGIPFE 113
           L I     L+ G      P  L+L PTRELA Q+     K   +  ++    + GG P  
Sbjct: 205 LHIMAQPPLQPGDG----PIALVLAPTRELAVQIETETRKSLTRVPSIMTTCVYGGTPKG 260

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L  G  V I TPGR++D        +  +  L +DEADRMLDMGF   I+ I S 
Sbjct: 261 PQQRSLRAGVHVCIATPGRLIDLLETNCTNLLRVTYLTLDEADRMLDMGFEDQIRKICSQ 320

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKK 231
           +   RQTL+FSAT   E++ ++ +F ++  R+ + +    + A+  +H FV       +K
Sbjct: 321 IRTDRQTLMFSATWPREIRNLAASFQKDFVRVHIGSEELVANADVHQHVFVVEGYHKEEK 380

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ-GFSVCAIHGNIDQRSRMKILSN 290
              L+++L+ Q   +  ++F   KK+   L   L +    +V AIHG+  Q SR  +L  
Sbjct: 381 ---LEEILR-QVGPQRVLVFVKTKKSCDILQDRLGRALRQTVLAIHGDKLQSSRDYVLDR 436

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F++    ++VA+D+AARGLDI ++  V N+D+P   E+Y+HRIGRTGRAG+ G A++ V+
Sbjct: 437 FRKDERAILVATDVAARGLDIKNLDVVVNYDMPLNIEDYVHRIGRTGRAGKTGDAYSFVS 496

Query: 351 KEDIKHI--DAIEKLIEKK 367
             D      D IE L+  K
Sbjct: 497 SADNSKTIRDLIELLLRAK 515


>gi|283049400|gb|ADB07168.1| DEAD-box RNA helicase-like protein [Prunus persica]
 gi|283049402|gb|ADB07169.1| DEAD-box RNA helicase-like protein [Prunus persica]
          Length = 413

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 199/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     V   + L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 102 LDYA---VVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLYD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     ++ L  +++ L
Sbjct: 394 IQRFYNVVIEELPSNVADL 412


>gi|168213797|ref|ZP_02639422.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens CPE str. F4969]
 gi|170714741|gb|EDT26923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens CPE str. F4969]
          Length = 405

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 122/371 (32%), Positives = 208/371 (56%), Gaps = 8/371 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           MD F  LGLS +V+ +++  G  +PT IQ K IP +L   +V G A+TGTGKT +++LP+
Sbjct: 1   MDKFLKLGLSEEVLKSLVGLGIEEPTDIQEKAIPEILNGKNVIGKAETGTGKTLAYLLPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVAD--NFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +  ++  +  ++    +IL PT EL  Q+ +  N  K G    +T   L+G    + Q +
Sbjct: 61  IEKIDDSKNEMQ---AIILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQME 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+    +L+ T GRIL+  N+ K+  N I+ +VIDE D++LD   I  ++++    P  
Sbjct: 118 KLKNKPHILVGTTGRILELINKKKITTNTIKTIVIDEGDKLLDFINIKDVRSVVKSCPRD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSATM ++  + ++  +   + I+    +   E IEH +     +   K   L++
Sbjct: 178 TQKLIFSATMNEKALENADELIGISELIQAKAANKVNENIEHGYFQ--VELRDKIDFLRK 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ +    K  I+F N   NV N+   L+       ++HG+ ++  R K L +F+ G  +
Sbjct: 236 LIHAIGDEKKIIVFINNSYNVHNVIQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAK 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ SD++ARGLDI    H+ N D+P  ++NY+HR+GR GRAG  G A++L   ++ K I
Sbjct: 296 VLITSDVSARGLDIKGATHIVNLDIPMNSQNYLHRVGRVGRAGEKGFAYSLADYKEEKII 355

Query: 358 DAIEKLIEKKV 368
              E+ ++ K+
Sbjct: 356 VKCERQLKIKI 366


>gi|94556865|gb|AAY89069.2| vasa-like protein [Litopenaeus vannamei]
          Length = 703

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 205/386 (53%), Gaps = 18/386 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P ++  ++ AGY  PTP+Q  TIP V+   D+   AQTG+GKTA+F+LPML  
Sbjct: 263 FQSMNLRPLLLENIVKAGYGCPTPVQKYTIPNVMNGRDIMACAQTGSGKTAAFLLPMLHY 322

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +               P  L++ PTRELA Q+     K+  +      +  GG     Q 
Sbjct: 323 ILDNNCPSNAFEEPAQPTGLVICPTRELAIQIMREARKFSHSSVAKCCVAYGGAAGFHQL 382

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K +  G  +L+ TPGR+LD   +GK++ ++++ LV+DEADRMLDMGF+  I+ + +    
Sbjct: 383 KTIHSGCHILVATPGRLLDFLEKGKIVFSSLKYLVLDEADRMLDMGFLSSIKTVINHKTM 442

Query: 177 T----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSK 230
           T    R TL+FSAT   E+Q+++  FL N   + V T  +    +  E   V  + + +K
Sbjct: 443 TPTAERITLMFSATFPHEIQELASAFLNNYLFVVVGTVGAANTDVKQEVLCVPKFEKKAK 502

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
              + +++L S D  K  ++F  QK+    +   L ++ F    +HG+  Q  R + LS 
Sbjct: 503 LVEMCEEILISADDEKI-LVFVEQKRVADFVGTYLCEKKFRATTMHGDRYQAQREQALSE 561

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ + ARGLDI  +G V N+D+P   + Y+HRIGRTGR G  G + +   
Sbjct: 562 FRTGVHNILVATAVTARGLDIKGIGVVVNYDLPKDIDEYVHRIGRTGRLGNRGLSISFYD 621

Query: 351 KEDIKHI--DAIEKLIEKK---VDWL 371
            E    +  D ++ L E      DWL
Sbjct: 622 DETDACLTKDLVKVLSEANQTIPDWL 647


>gi|332716889|ref|YP_004444355.1| cold-shock DEAD box protein [Agrobacterium sp. H13-3]
 gi|325063574|gb|ADY67264.1| cold-shock DEAD box protein [Agrobacterium sp. H13-3]
          Length = 615

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 120/346 (34%), Positives = 195/346 (56%), Gaps = 6/346 (1%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--E 64
           G++P +  A+   GY   TP+Q   +   L   D    AQTG+GKT +F + + T L  E
Sbjct: 6   GIAPAIAQALEKRGYKDLTPVQKAMLSPELADKDALVSAQTGSGKTVAFGIALATTLLSE 65

Query: 65  KGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
             R  +   P  L + PTRELA QV    E   +   +++A  +GG+   ++ + LERGA
Sbjct: 66  NTRFGQASAPLALAIAPTRELAMQVKRELEWLYEFAGVSIASCVGGMDIRSERRALERGA 125

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            +++ TPGR+ DH  RG L ++++  +V+DEAD MLD+GF   ++ I    P  R+TL+F
Sbjct: 126 HIIVGTPGRLCDHIKRGALDLSSLRAVVLDEADEMLDLGFREDLEFILEESPDNRRTLMF 185

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT+   + K++E++ +N  RI   T S   + ++  + A     S +   +   L+  +
Sbjct: 186 SATVPRSIAKLAESYQKNAVRI--ATASEQKQHVDIEYRALLVTGSDRENAIINALRFYE 243

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +N I+FC+ +  V +L   L  +GFSV A+ G + Q  R   L   ++G  ++ VA+D
Sbjct: 244 A-RNAIVFCSTRAAVNHLTARLNNRGFSVVALSGELTQNERTHALQAMRDGRARVCVATD 302

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +AARG+D+P +  V + D+P  +E  +HR GRTGRAG+ G +  +V
Sbjct: 303 VAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGQKGVSAIVV 348


>gi|194747377|ref|XP_001956128.1| GF25051 [Drosophila ananassae]
 gi|190623410|gb|EDV38934.1| GF25051 [Drosophila ananassae]
          Length = 826

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 114/357 (31%), Positives = 197/357 (55%), Gaps = 6/357 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   GY  PTPIQ KTIPL+L+  DV  +A+TG+GKTA F++P+   
Sbjct: 40  FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++ R   +  R LIL PTRELA Q     ++ G+   L   L++GG   ++Q   +   
Sbjct: 100 LQR-REPTKGARALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHTC 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR L       L +N+IE +V DEADR+ +MGF   +      +P TRQ ++
Sbjct: 159 PDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSTRQMVM 218

Query: 183 FSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           FSAT+   L   +   L +P   R++V +    A  ++  +     +Y+    LL+ ++ 
Sbjct: 219 FSATLPKLLVDFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYVIP 278

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      ++F   + +V  + + L   G S  +++ ++D  +R    + F    + +++
Sbjct: 279 QESQT---VVFAGTQHHVELISYILTGAGISNTSVYSSLDPAARKINTAKFVSKKVSVLI 335

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +D+AARG+DIP + +V N   P + + ++HR+GR  RAGR G A+++ + +D  H+
Sbjct: 336 VTDVAARGIDIPSLDYVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIFSTDDTAHL 392


>gi|227204273|dbj|BAH56988.1| AT3G13920 [Arabidopsis thaliana]
          Length = 398

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 124/354 (35%), Positives = 188/354 (53%), Gaps = 11/354 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 41  FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    + +    L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 101 LDFSLIQCQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAG 157

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 158 VHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 217

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 218 FSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLA 277

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 278 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 332

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           + +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V ++D
Sbjct: 333 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 386


>gi|212527694|ref|XP_002144004.1| ATP dependent RNA helicase (Dbp8), putative [Penicillium marneffei
           ATCC 18224]
 gi|210073402|gb|EEA27489.1| ATP dependent RNA helicase (Dbp8), putative [Penicillium marneffei
           ATCC 18224]
          Length = 538

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/384 (34%), Positives = 212/384 (55%), Gaps = 20/384 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L ++P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F +P   I
Sbjct: 110 FATLNVAPWLVKSLSTMAIRRPTAIQKSCIPEILKGKDCIGGSRTGSGKTIAFAVP---I 166

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K          ++L PTRELA Q+ + F+      +L   L+ GG     Q   L + 
Sbjct: 167 LQKWAEDPFGVFAVVLTPTRELALQIFEQFKAISAPQSLKPVLITGGTDMRPQAIALSQR 226

Query: 123 ADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSLVP 175
             V+I TPGR+ DH         + +N + ++V+DEADR+L  G    +P ++   S +P
Sbjct: 227 PHVIIATPGRLADHIRTSGEDTIVGLNRVRMVVMDEADRLLTSGQGSMLPDVETCLSALP 286

Query: 176 FT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET---IEHCFVATYAQ--Y 228
            +  RQTLLF+AT+T E++ + ++  +   R  ++      E    I      TY Q   
Sbjct: 287 PSSERQTLLFTATVTPEVRAL-KSMPRPANRPPIHVTEIGTENHAPIPPTLKQTYLQVPM 345

Query: 229 SKKCALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
           + + A L  LL ++ ++ K  IIFCN+ +    L   L +    V ++H  + Q  R   
Sbjct: 346 THREAFLHVLLSTERNSTKPAIIFCNRTRTADLLERILRRLSHRVTSLHSLLPQSERTAN 405

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           LS F+    +L+VA+D+A+RGLDIP+V  V NFDVP   ++Y+HR+GRT RAGR G++ T
Sbjct: 406 LSRFRASAARLLVATDVASRGLDIPNVSLVINFDVPRNPDDYVHRVGRTARAGRTGESVT 465

Query: 348 LVAKEDIKHIDAIEKLIEKK-VDW 370
           LV + D++ + AIEK + ++ ++W
Sbjct: 466 LVGQRDVQLVLAIEKRVGRQMIEW 489


>gi|325685734|gb|EGD27812.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 453

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 126/364 (34%), Positives = 201/364 (55%), Gaps = 9/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  ++   +   G+ KPTP+Q K IP +L+   V   A TG+GKT ++++P+L  
Sbjct: 5   FTDTRLRSEIRQGLAKIGFAKPTPVQEKVIPAMLKGESVIVQAATGSGKTHAYLIPILNA 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL--LIGGIPFEAQNKKLE 120
           +++    V+    ++  P+RELA Q+     +   N  L +A+  L GG   + Q  + E
Sbjct: 65  IDEDALYVQ---AIVTAPSRELADQLYRVARQLRDNSGLNIAIAHLAGGSDRDRQIARFE 121

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    ++I TPGR+LD  ++  LL++ ++  VIDEAD  LD+GF+  +  I + +P    
Sbjct: 122 QNKPQLVIATPGRLLDFADKKILLLDQVKNFVIDEADMTLDLGFLADVDKIAARLPKDVV 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSAT+  +L      ++  P+ I ++ P+  A TI++  +   ++  KK  + + L 
Sbjct: 182 MSAFSATIPVKLTNFLRKYMAKPEEIVIDNPAVIAPTIKNDLLDIGSKDRKKI-VYKLLT 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  +   ++F N K+ V  L   L KQG  V  IHG I +R R + L   + G  Q +
Sbjct: 241 MGQPYL--ALVFANTKQMVDELADYLTKQGLKVAKIHGGITERERKRTLREVRAGQYQYV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASDLAARG+D+P V  V N+++P   E  IHRIGRTGR G  G A TLV +E++  + A
Sbjct: 299 VASDLAARGIDLPGVSLVINYEIPKELEFIIHRIGRTGRNGLPGHAVTLVREEEMNRVGA 358

Query: 360 IEKL 363
           +E +
Sbjct: 359 LEHM 362


>gi|157871882|ref|XP_001684490.1| mitochondrial DEAD box protein [Leishmania major strain Friedlin]
 gi|68127559|emb|CAJ05642.1| putative mitochondrial DEAD box protein [Leishmania major strain
           Friedlin]
          Length = 544

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/346 (37%), Positives = 185/346 (53%), Gaps = 17/346 (4%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           Y   T IQ  TIPL+   HDV G+A TG+GKT +F +P L  L+        P  L+L P
Sbjct: 113 YPSTTDIQKFTIPLLANGHDVIGLAPTGSGKTVAFAVPALAGLKPNPDGT--PSVLVLAP 170

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TREL  Q    F+  G    + V    GG P + Q + L  G D L+  PGR+ D  + G
Sbjct: 171 TRELVQQTTKVFQNLGCG-QVRVCEAYGGAPRDLQARHLRNGCDALVACPGRLKDFLDGG 229

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--QTLLFSATMTDELQKVSENF 198
            + + N+  LV DEADR+LDMGF  ++  I + +      QT+++SAT  + +Q ++  +
Sbjct: 230 DVSIRNLSFLVFDEADRLLDMGFQVHLDEIMAYLDSASHPQTMMWSATWPESVQAMARKY 289

Query: 199 LQNPKRIEVNTPSSTA-----ETI--EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
           L +  R+ +   ++ A     E I  E  F  T+ +  +K   L +     D     IIF
Sbjct: 290 LSD-DRVLIRAGTAGAGLQVNERIKQELIFCRTFTERIEKLGSLVEDGTIDDNKDKLIIF 348

Query: 252 CNQKKNVVN----LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
             ++ +  N      H L      V  IHG + QR R +++S FK   I+L+VA+D+A+R
Sbjct: 349 VERQADTENTARAFSHRLGIDTRYVGTIHGGLSQRQRDRVMSMFKSNHIRLLVATDVASR 408

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           GLDIPDV  V NF  P   ++Y HRIGRTGRAGR G A+T + +ED
Sbjct: 409 GLDIPDVTCVVNFQAPKTIDSYCHRIGRTGRAGRTGTAYTFLGEED 454


>gi|71000162|ref|XP_754798.1| eukaryotic translation initiation factor 4 [Aspergillus fumigatus
           Af293]
 gi|74674080|sp|Q4WX43|IF4A_ASPFU RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|66852435|gb|EAL92760.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           fumigatus Af293]
 gi|159127807|gb|EDP52922.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           fumigatus A1163]
          Length = 406

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 130/367 (35%), Positives = 208/367 (56%), Gaps = 5/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P+++  V   G+ +P+ IQ + I  +++ +DV   AQ+GTGKTA+F    ++ 
Sbjct: 27  FDAMDLKPELLRGVYAYGFERPSAIQQRAILPIIKGNDVIAQAQSGTGKTATF---SISA 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    V+  + LIL PTRELA Q+       G   N+     IGG       K L+ G
Sbjct: 84  LQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTNVREDMKALQEG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +N+++ ++DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 144 PQVVVGTPGRVQDMIQRRVLRTDNLKMFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 204 LSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A+
Sbjct: 263 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIAT 321

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 322 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 381

Query: 363 LIEKKVD 369
               +++
Sbjct: 382 FYSTQIE 388


>gi|332026541|gb|EGI66659.1| Eukaryotic initiation factor 4A-II [Acromyrmex echinatior]
          Length = 423

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 215/379 (56%), Gaps = 9/379 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F    ++
Sbjct: 51  NFDEMNLKEELLRGIYAYGFEKPSAIQQRAILPCIRGLDVIAQAQSGTGKTATF---SIS 107

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    ++  + LIL PTRELA Q+       G   +      IGG       +KL++
Sbjct: 108 ILQQIDTSIKECQALILAPTRELAQQIQKVVIALGDFMHAECHACIGGTNVREDMRKLDQ 167

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  +R  L  ++I++ V+DEAD ML  GF   I ++  L+P   Q +
Sbjct: 168 GVHVVVGTPGRVYDMISRRALRASSIKLFVLDEADEMLSRGFKDQIHDVFKLLPNEVQVI 227

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++  VS+ F++NP RI V     T E I+  FV    +  K    L+ L   
Sbjct: 228 LLSATMPSDVLDVSKCFMRNPIRILVKKEELTLEGIKQFFVYVEREDWK----LETLCDL 283

Query: 242 QDTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            DT+     +IFCN ++ V  L  S+ K+ F+V A+HG+++Q+ R  I+  F+ G+ +++
Sbjct: 284 YDTLSITQAVIFCNTRRKVDWLTESMHKRDFTVSAMHGDMEQKERDLIMRQFRTGSSRVL 343

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V +ED + +  
Sbjct: 344 ITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTEEDKRTLKD 403

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+     +D +  +++ L
Sbjct: 404 IEQFYNTHIDEMPMNVADL 422


>gi|290958777|ref|YP_003489959.1| RNA helicase [Streptomyces scabiei 87.22]
 gi|260648303|emb|CBG71414.1| putative RNA helicase [Streptomyces scabiei 87.22]
          Length = 446

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 123/364 (33%), Positives = 190/364 (52%), Gaps = 8/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  +++  +   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 23  FDALGLPGRLLETLRAEGVTTPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y +   L +A ++GG+    Q   L  G
Sbjct: 83  TAGQRAEPRQPLALVLVPTRELAQQVTDALTPYARALRLRLATVVGGMSIGRQASALRGG 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D  +R    ++ + I V+DEAD+M DMGF+P +  +   V    Q LL
Sbjct: 143 AEVVVATPGRLKDLIDRADCRLDQVAITVLDEADQMADMGFMPQVTALLDQVRPGGQRLL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++  ++L +P    V+  +    T++H  +  + +   K A   ++   +
Sbjct: 203 FSATLDRNVDRLVRDYLHDPVVHSVDPSAGAVTTMDHHVL--HIEDDDKHATTTEIAARE 260

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F + K     L   L   G    A+HG   Q  R + LS FK+G +  +VA+
Sbjct: 261 GRV---IMFLDSKHATDRLVKKLLAVGVRAAALHGGKSQSQRNRALSQFKDGDVTALVAT 317

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV---AKEDIKHIDA 359
           ++AARG+ + D+  V N D P   ++Y+HR GRT RAG  G   TLV    + D+  + A
Sbjct: 318 NVAARGIHVDDLDLVVNVDPPGDHKDYLHRGGRTARAGESGTVVTLVLPHQRRDVTRLMA 377

Query: 360 IEKL 363
           +  +
Sbjct: 378 VAGI 381


>gi|38073423|gb|AAR10833.1| Hel61 [Leishmania major]
          Length = 544

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/346 (37%), Positives = 185/346 (53%), Gaps = 17/346 (4%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           Y   T IQ  TIPL+   HDV G+A TG+GKT +F +P L  L+        P  L+L P
Sbjct: 113 YPSTTDIQKFTIPLLANGHDVIGLAPTGSGKTVAFAVPALAGLKPNPDGT--PSVLVLAP 170

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TREL  Q    F+  G    + V    GG P + Q + L  G D L+  PGR+ D  + G
Sbjct: 171 TRELVQQTTKVFQNLGCG-QVRVCEAYGGAPRDLQARHLRNGCDALVACPGRLKDFLDGG 229

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--QTLLFSATMTDELQKVSENF 198
            + + N+  LV DEADR+LDMGF  ++  I + +      QT+++SAT  + +Q ++  +
Sbjct: 230 DVSIRNLSFLVFDEADRLLDMGFQVHLDEIMAYLDSASHPQTMMWSATWPESVQAMARKY 289

Query: 199 LQNPKRIEVNTPSSTA-----ETI--EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
           L +  R+ +   ++ A     E I  E  F  T+ +  +K   L +     D     IIF
Sbjct: 290 LSD-DRVLIRAGTAGAGLQVNERIKQELIFCRTFTERIEKLGSLVEDGTIDDNKDKLIIF 348

Query: 252 CNQKKNVVN----LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
             ++ +  N      H L      V  IHG + QR R +++S FK   I+L+VA+D+A+R
Sbjct: 349 VERQADTENTARAFSHRLGIDTRYVGTIHGGLSQRQRDRVMSMFKSNHIRLLVATDVASR 408

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           GLDIPDV  V NF  P   ++Y HRIGRTGRAGR G A+T + +ED
Sbjct: 409 GLDIPDVTCVVNFQAPKTIDSYCHRIGRTGRAGRTGTAYTFLGEED 454


>gi|118092589|ref|XP_421574.2| PREDICTED: similar to Gu protein [Gallus gallus]
          Length = 690

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/355 (36%), Positives = 202/355 (56%), Gaps = 21/355 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F++  LSP  +  +   G     P+Q+KT   +    D+   A+TGTGKT SF +P+   
Sbjct: 127 FSNFPLSPSTINLLKARGVKYLFPVQVKTFQPIYDGKDLIAQARTGTGKTFSFAIPLTEK 186

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  + +   R R P+ L+L PTRELA QVA +F+   +   L+VA   GG P++AQ   L
Sbjct: 187 LQSVSQDEKRGRSPKVLVLVPTRELAIQVAKDFKNLTRK--LSVACFYGGTPYKAQFDLL 244

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV----- 174
           + G D+L+ TPGRI DH    KL ++N++ +V+DE D MLDMGF   ++ I         
Sbjct: 245 KNGIDILVGTPGRIKDHIQNSKLDLSNVKHVVLDEVDHMLDMGFAEQVEEILGFAYKKGS 304

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKK 231
             + QTLLFSAT    +  V++ +++   +++++       TA T+EH  +A   + S++
Sbjct: 305 ENSPQTLLFSATCPRWVYDVAKKYMKGEYEQVDLIGKKTQRTATTVEH--LAIQCRSSQR 362

Query: 232 CALLQQLLQ-SQDTMKNGIIFCNQKK--NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
             +L  ++Q    +    I+FC  KK  N + L  +L+++  S   +HG+I Q+ R   L
Sbjct: 363 AEVLGDIIQVYSGSHGRTIVFCETKKEANELALNSALKQEAQS---LHGDIPQKQREVTL 419

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
             F+ G  ++++A+++AARGLDIP+V  V     P   ++YIHR GRTGRAGR G
Sbjct: 420 KGFRNGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGRAGRTG 474


>gi|301101090|ref|XP_002899634.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262103942|gb|EEY61994.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 456

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 195/361 (54%), Gaps = 11/361 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL  K++  ++  G   PT IQ +  P+ L   D+ GIA+TG+GKT +F LPM+ 
Sbjct: 63  SFMHLGLDRKMLQTLMKLGLEAPTAIQTQAFPVALSGRDLIGIAKTGSGKTLAFTLPMVR 122

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R   R   P  L+L PTRELA Q     +K+   Y  + A + GG     Q + L
Sbjct: 123 HVMDQRELQRGEGPIALVLAPTRELAHQTYVQAKKFLAVYGASCAAIYGGAGKWEQVQAL 182

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G +V++ TPGR+++   +    MN +  +V+DEADRM +MGF P ++++   V   RQ
Sbjct: 183 KKGVEVVVATPGRLIEMIRKKAAPMNRVTFVVLDEADRMFEMGFEPQLRSVMGQVRPDRQ 242

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT    ++ ++ + L NP ++ V       E I    V      +K   L+ ++ 
Sbjct: 243 ILMFSATFRRRIETLALDVLTNPVKLTVGQIGQANEDIRQIAVVLPGHGAKWPWLMSKIR 302

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLE---KQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
              D  +  +IF   K     L  +L        ++C +HG+  Q+ R + L+ FK G  
Sbjct: 303 SLVDEGRL-LIFAGSKAGCEELAKNLAVAFPAAPALC-LHGDKTQQERAEALTKFKHGAC 360

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH----GKAFTLVAKE 352
           +++VA+D+AARGLD+ DV +V NFDV    + ++HRIGRTGR G      G A+TLV + 
Sbjct: 361 RVLVATDVAARGLDVKDVKNVVNFDVAKSIDTHVHRIGRTGRMGLEGFEPGTAYTLVTRN 420

Query: 353 D 353
           +
Sbjct: 421 E 421


>gi|149511217|ref|XP_001519340.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 757

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/355 (37%), Positives = 198/355 (55%), Gaps = 21/355 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ KT   V    DV   A+TGTGKT SF +P++  
Sbjct: 174 FSNFSISKETIQLLKARGVTYLFPIQAKTFGHVSSGKDVIAQARTGTGKTFSFAIPLIEK 233

Query: 63  LE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+   K + R R+P+ L+L PTRELA QV  +F    K   LTVA   GG  +  Q   +
Sbjct: 234 LQRDLKDQKRGRLPKVLVLTPTRELAIQVGRDFSDITKK--LTVACFYGGTAYNGQINHI 291

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   G+L + +++ +V+DE D+MLDMGF   ++ I S V + + 
Sbjct: 292 RNGIDILVGTPGRIRDHIQSGRLNLTSLQHVVLDEVDQMLDMGFAEQVEEILS-VAYKKD 350

Query: 179 -----QTLLFSATMTDELQKVSENFLQ-NPKRIEV--NTPSSTAETIEHCFVATYAQYSK 230
                QTLLFSAT    +  V++ +++   +++++       TA T+EH  +A    +++
Sbjct: 351 SEDNPQTLLFSATCPHWVYDVAKKYMKVKYEQVDLIGKKTQKTAMTVEH--LAIKCHWAQ 408

Query: 231 KCALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLE-KQGFSVCAIHGNIDQRSRMKIL 288
           + A++  ++Q    T    I+FC  KK    L  S   KQ     ++HG+I Q+ R   L
Sbjct: 409 RAAVIGTVIQVYSGTHGRTIVFCRTKKEATELSLSPAIKQ--DAQSLHGDIPQKQREITL 466

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
             F+ G   ++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 467 KGFRSGAFGVLVATNVAARGLDIPEVDLVVQSSPPEDVESYIHRSGRTGRAGRTG 521


>gi|145608086|ref|XP_360845.2| hypothetical protein MGG_03388 [Magnaporthe oryzae 70-15]
 gi|152013507|sp|A4R715|DHH1_MAGO7 RecName: Full=ATP-dependent RNA helicase DHH1
 gi|145015595|gb|EDK00085.1| hypothetical protein MGG_03388 [Magnaporthe oryzae 70-15]
          Length = 524

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 120/362 (33%), Positives = 195/362 (53%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F + GL   ++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 36  LEFENFGLKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVVPAL 95

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +    ++++    LIL PTRELA Q +   +  GK+  + V +  GG        +L+
Sbjct: 96  ETINPKVSKIQ---CLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTTLRDDILRLQ 152

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +    ++   + ++DEAD++L + F P I+ +    P  RQ 
Sbjct: 153 DPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQV 212

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    +++ S+  + NP  I +     T   I   +   + +  +K   L  L  
Sbjct: 213 MLFSATFPISVKEFSDKNMTNPYEINL-MDELTLRGITQYYA--FVEEKQKVHCLNTLF- 268

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q++R ++  +F+ G  + +V
Sbjct: 269 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMQQQARNRVFHDFRNGVCRNLV 328

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L++ ED  ++  I
Sbjct: 329 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLISWEDRFNLYNI 388

Query: 361 EK 362
           E+
Sbjct: 389 ER 390


>gi|255972909|ref|ZP_05423495.1| helicase [Enterococcus faecalis T1]
 gi|256618957|ref|ZP_05475803.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256762384|ref|ZP_05502964.1| helicase [Enterococcus faecalis T3]
 gi|256958868|ref|ZP_05563039.1| helicase [Enterococcus faecalis DS5]
 gi|256962038|ref|ZP_05566209.1| helicase [Enterococcus faecalis Merz96]
 gi|256965236|ref|ZP_05569407.1| helicase [Enterococcus faecalis HIP11704]
 gi|257078900|ref|ZP_05573261.1| helicase [Enterococcus faecalis JH1]
 gi|257085363|ref|ZP_05579724.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|257086858|ref|ZP_05581219.1| helicase [Enterococcus faecalis D6]
 gi|257089771|ref|ZP_05584132.1| helicase [Enterococcus faecalis CH188]
 gi|257415987|ref|ZP_05592981.1| helicase [Enterococcus faecalis AR01/DG]
 gi|257422733|ref|ZP_05599723.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294779570|ref|ZP_06744964.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300861181|ref|ZP_07107268.1| DEAD-box ATP-dependent RNA helicase CshB [Enterococcus faecalis
           TUSoD Ef11]
 gi|255963927|gb|EET96403.1| helicase [Enterococcus faecalis T1]
 gi|256598484|gb|EEU17660.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256683635|gb|EEU23330.1| helicase [Enterococcus faecalis T3]
 gi|256949364|gb|EEU65996.1| helicase [Enterococcus faecalis DS5]
 gi|256952534|gb|EEU69166.1| helicase [Enterococcus faecalis Merz96]
 gi|256955732|gb|EEU72364.1| helicase [Enterococcus faecalis HIP11704]
 gi|256986930|gb|EEU74232.1| helicase [Enterococcus faecalis JH1]
 gi|256993393|gb|EEU80695.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|256994888|gb|EEU82190.1| helicase [Enterococcus faecalis D6]
 gi|256998583|gb|EEU85103.1| helicase [Enterococcus faecalis CH188]
 gi|257157815|gb|EEU87775.1| helicase [Enterococcus faecalis ARO1/DG]
 gi|257164557|gb|EEU94517.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294453360|gb|EFG21768.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300850220|gb|EFK77970.1| DEAD-box ATP-dependent RNA helicase CshB [Enterococcus faecalis
           TUSoD Ef11]
 gi|323480612|gb|ADX80051.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis 62]
          Length = 449

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 207/367 (56%), Gaps = 15/367 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P +  A+ + G+ +PT +Q K IP++ +   V G +QTG+GKT +F+LP++  
Sbjct: 4   FKQFQFQPFINEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLM-- 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
            +K +  +   + +I  P+RELA Q+    ++  +     + V+  +GG   + Q  KL+
Sbjct: 62  -DKVKPTIDEVQIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKLK 120

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   V+I TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I   +P   Q
Sbjct: 121 HQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+ ++L+   + +L+NP    +   +  +ETI++  ++T  + S +  ++ QLL
Sbjct: 181 MLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNQ--IIYQLL 238

Query: 240 QSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               T+ +    I+F N K+ V  +   L+ QG  V  IHG+I  R R +++   +    
Sbjct: 239 ----TIGHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDY 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VA+DLAARG+DI  V HV N +VP+  + +IHR+GRTGR G +G A TL +  D + 
Sbjct: 295 QYVVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEA 354

Query: 357 IDAIEKL 363
           I  IE+L
Sbjct: 355 ITQIEQL 361


>gi|322696830|gb|EFY88617.1| ATP-dependent RNA helicase dbp3 [Metarhizium acridum CQMa 102]
          Length = 591

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 128/356 (35%), Positives = 188/356 (52%), Gaps = 24/356 (6%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML----TILEKGRARVRMPR 74
           A +  PTPIQ  + P  L   DV G+A+TG+GKT +F LP +     I +KG       +
Sbjct: 189 ANFKAPTPIQAASWPSTLSGRDVVGVAETGSGKTMAFALPCVESVSAIGKKGT------K 242

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            +++ PTRELA Q             L    L GG   + Q   + RGAD+++ TPGR+ 
Sbjct: 243 AVVISPTRELAMQTHTQLASLAALAKLKCVCLYGGSSKDEQRAMVNRGADIIVATPGRLK 302

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI--TSLVPFTRQTLLFSATMTDELQ 192
           D  + G + +++ +  V+DEADRMLD GF   I+ I    L    RQTL+F+AT    +Q
Sbjct: 303 DFMSDGTVDLSDCQFAVLDEADRMLDKGFEDDIKQILGACLARERRQTLMFTATWPQSVQ 362

Query: 193 KVSENFLQNPKRIEVN-----TPSSTAETIEHCFVATYAQY----SKKCALLQQLLQSQD 243
            ++  F+ +P +I +      T + + E   +  +    +      K+  LLQ L Q Q 
Sbjct: 363 ALASTFMVDPVKITIGSGGKETENGSVELQANTRITQKVEVVDPKDKEFRLLQILKQHQQ 422

Query: 244 TMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     ++FC  KK    + + L ++G  V  IHG++ Q  R + L  FK G   ++V
Sbjct: 423 GKQKNDRILVFCLYKKEATRVENFLSRKGIRVGGIHGDLKQEQRTRSLEAFKTGQTPVLV 482

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           A+D+AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG  G+A TL   +D  H
Sbjct: 483 ATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGNTGEAHTLFTVQDKAH 538


>gi|304320267|ref|YP_003853910.1| hypothetical protein PB2503_03462 [Parvularcula bermudensis
           HTCC2503]
 gi|303299169|gb|ADM08768.1| hypothetical protein PB2503_03462 [Parvularcula bermudensis
           HTCC2503]
          Length = 623

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 123/396 (31%), Positives = 213/396 (53%), Gaps = 13/396 (3%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           GL   +  A+   GY   T +Q   +   +   D+   AQTG+GKT +F L M   L +G
Sbjct: 9   GLPAPLSRALTAKGYDSLTEVQSAMLDEGVSGRDLLVSAQTGSGKTVAFGLAMGPDLMRG 68

Query: 67  RARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
           +AR+    +P  L++ PTRELA QVA            TVA  +GG+    + + L+RGA
Sbjct: 69  QARLPRGGVPLALVVAPTRELAMQVAREITWLYAETGATVATCVGGMDLRRERQALDRGA 128

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            +++ TPGR++DH +R  L ++ + + ++DEAD ML +GF   ++ I       R+TL+F
Sbjct: 129 HIVVGTPGRLVDHISRDALDLSALRVAILDEADEMLKLGFRQELEAILDACAEDRRTLMF 188

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT+   + K++  + ++  RI  + P+ + + I +  + T +Q+  + A++  L   + 
Sbjct: 189 SATVGGGIGKLAAQYQRDALRISASGPARSHDDIAYKAMVT-SQHDAEKAIINTLRFHE- 246

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +N I+FC  +  V  L   L  +GFSV ++ G + Q+ R   L   ++G  ++ VA+D
Sbjct: 247 -AENAIVFCGTRAAVARLTSRLANRGFSVVSLSGELSQQERTNALQAMRDGRARVCVATD 305

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARG+D+P +  V + D+P   E  +HR GRTGRAGR G +  +V     + ++ + + 
Sbjct: 306 VAARGIDLPGLELVIHADLPKDREGLLHRSGRTGRAGRKGTSVLVVPPRARRRVEQLFRD 365

Query: 364 IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
            +   DW       + PP  +  +A+ +    ++PI
Sbjct: 366 AKVDADW-------IAPPSAEAVLARDDARLLSDPI 394


>gi|294901517|ref|XP_002777393.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239885024|gb|EER09209.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 515

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/390 (33%), Positives = 198/390 (50%), Gaps = 35/390 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F   G    ++  +  AG+ KP+PIQ++  P+ +   D+ GIA+TG+GKT +F+LP +  
Sbjct: 119 FEQAGFPDYILHEIKQAGFEKPSPIQVQGWPVAMSGRDMVGIAETGSGKTLAFLLPAIVH 178

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L++G      P  L+L PTRELA Q  +   ++G++  +    + GG P   Q 
Sbjct: 179 INAQPYLQRGDG----PIVLVLAPTRELAVQTQEECNRFGRSSRIRNTCVYGGTPRGPQA 234

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  G ++ I TPGR++D    G+  +  +  L                I+ ITS V  
Sbjct: 235 RALANGVEICIATPGRLIDFLESGRTNLRRVTYL----------------IRKITSQVRP 278

Query: 177 TRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            RQTLL+SAT   E+Q ++ +   + P  I V + S  A      +V     Y KK  L 
Sbjct: 279 DRQTLLWSATWPKEIQGLARDLCREEPVHINVGSMSLRASHNVTQYVDIVQDYEKKDKLK 338

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L +  D  K  +IF + K+   +L   L   G+   +IHG+  Q  R  +L  FK G 
Sbjct: 339 QLLERIMDGSKI-VIFTDTKRAADDLTRMLRMDGWPALSIHGDKKQEERDWVLQEFKSGK 397

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +M+A+D+A+RGLD+ D+ HV N+D P + E+Y+HRIGRTGRAG  G A++    +   
Sbjct: 398 SPIMIATDVASRGLDVKDLRHVINYDFPGQIEDYVHRIGRTGRAGAKGSAYSFFTPDKY- 456

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
                 KL +  +  L     ++ P LEKI
Sbjct: 457 ------KLAKDLIGVLREAEQAVPPELEKI 480


>gi|284992234|ref|YP_003410788.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus
           obscurus DSM 43160]
 gi|284065479|gb|ADB76417.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus
           DSM 43160]
          Length = 474

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 119/348 (34%), Positives = 182/348 (52%), Gaps = 7/348 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   +V  +  +G   P PIQ+ T+P  L   DV G  +TG+GKT +F LP++  
Sbjct: 8   FADLGVPAPLVEVLTASGITAPFPIQVATLPDSLAGRDVLGRGRTGSGKTLAFSLPLVAR 67

Query: 63  LEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L     R + + PR+LIL PTRELA QVA   +   +   +    + GG+    Q + L 
Sbjct: 68  LAASVSRRQPKRPRSLILVPTRELANQVAAVVDPMARALGMKTTTIFGGVGQNPQVQALA 127

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI  PGR+ D   +G   +  +EI ++DEAD M D+GF+P ++ +    P   Q 
Sbjct: 128 GGIDVLIACPGRLEDLIGQGHCDLGAVEITILDEADHMADLGFLPGVKRLMDRTPEVGQR 187

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ + +  + + +L NP    V+   +   T+ H  +    Q + K  +++QL  
Sbjct: 188 LLFSATLDNGVDVLVKRYLSNPVTHSVDPAVAPVSTMTHHVL--QVQTADKAEVVRQLAS 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   ++F   K     L   L   G     +HGN+ Q +R + L  F  G  +++ 
Sbjct: 246 G---LGRSVLFTRTKHQAKKLAKQLTASGIPAVDLHGNLSQNARERNLEAFTTGASRVLC 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           A+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   T+
Sbjct: 303 ATDIAARGIHVDDVALVVHVDPPAEHKAYLHRSGRTARAGAEGAVVTV 350


>gi|322799953|gb|EFZ21079.1| hypothetical protein SINV_07394 [Solenopsis invicta]
          Length = 423

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 215/379 (56%), Gaps = 9/379 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F    ++
Sbjct: 51  NFDEMNLKEELLRGIYAYGFEKPSAIQQRAILPCIRGLDVIAQAQSGTGKTATF---SIS 107

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    ++  + LIL PTRELA Q+       G   +      IGG       +KL++
Sbjct: 108 ILQQIDTTIKECQALILAPTRELAQQIQKVVIALGDFMHAECHACIGGTNVREDMRKLDQ 167

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  +R  L  ++I++ V+DEAD ML  GF   I ++  L+P   Q +
Sbjct: 168 GVHVVVGTPGRVYDMISRRALRASSIKLFVLDEADEMLSRGFKDQIHDVFKLLPNEVQVI 227

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++  VS+ F++NP RI V     T E I+  FV    +  K    L+ L   
Sbjct: 228 LLSATMPSDVLDVSKCFMRNPIRILVKKEELTLEGIKQFFVYVEREDWK----LETLCDL 283

Query: 242 QDTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            DT+     +IFCN ++ V  L  S+ K+ F+V A+HG+++Q+ R  I+  F+ G+ +++
Sbjct: 284 YDTLSITQAVIFCNTRRKVDWLTESMHKRDFTVSAMHGDMEQKERDLIMRQFRTGSSRVL 343

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V +ED + +  
Sbjct: 344 ITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTEEDKRTLKD 403

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+     +D +  +++ L
Sbjct: 404 IEQFYNTHIDEMPMNVADL 422


>gi|330685975|gb|EGG97598.1| DEAD-box ATP-dependent RNA helicase CshB [Staphylococcus
           epidermidis VCU121]
          Length = 447

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/383 (33%), Positives = 206/383 (53%), Gaps = 17/383 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+  ++ AV D  + KPT IQ + IP +L+  ++ G +QTGTGK+ SF+LP++  
Sbjct: 6   FEHFGLNSSMIEAVKDLKFEKPTEIQNRIIPRILKGTNIIGQSQTGTGKSHSFLLPLVNQ 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           ++     +  P+ +++ PTRELA Q+   A++   + +  N    L IGG   E   ++ 
Sbjct: 66  ID---TDIHEPQAIVVAPTRELAQQLYQAANHLSGFKEGVN--AKLFIGGTDIEKDRQRC 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   ++I TP RI D    G L  +    L+IDEAD M+D+G I  +  I S +     
Sbjct: 121 NQQPQLVIGTPTRINDLAKSGHLHTHLASYLIIDEADLMIDLGLIEDVDFIASRLEEHSN 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +FSAT+   LQ     +L+ P  +EV++ S   + IE   + T     K  A +++ L
Sbjct: 181 IAVFSATIPKSLQPFLNKYLEQPDFVEVDSQSQNKKNIEFYLIPT-----KGTAKVEKTL 235

Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  D +     IIFCN + +   L  +L + G  V  IHG +  R R + +   +    Q
Sbjct: 236 KLIDILNPYLCIIFCNSRDSADELARTLNEAGIKVGMIHGGLTPRERKQQMKRIRNLDFQ 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++ASDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++ +++
Sbjct: 296 FVIASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYRGVAITLYSPDEEENV 355

Query: 358 DAIEK--LIEKKVDWLNGDLSSL 378
            AIE    + + VD  N +L+ +
Sbjct: 356 SAIEDRGYVFENVDIKNDELTPI 378


>gi|325185732|emb|CCA20213.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 551

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 120/318 (37%), Positives = 176/318 (55%), Gaps = 4/318 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL---EKGRARVRMPRTL 76
           G+  PTPIQ +  P++L   D+ GIA+TG+GKT +F +P L  L      +++    R L
Sbjct: 156 GFETPTPIQSQCWPILLSGRDIIGIAETGSGKTFAFTIPGLVHLASQSSPKSKAVKARML 215

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           ++ PTRELA Q A+   K GK+ NL    L GG+    Q ++L+ G DV++ TPGR+ D 
Sbjct: 216 VVAPTRELAMQTAEVINKAGKSCNLRCVCLFGGVAKHEQRRQLKSGVDVIVATPGRLNDL 275

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
            N     + N+   V+DEADRMLD GF   I+ I S V    Q  +FSAT    +QK++ 
Sbjct: 276 VNERVCDLTNVTFTVLDEADRMLDDGFEKDIRLIMSSVHKESQIAMFSATWPQSIQKLAH 335

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI-IFCNQK 255
            FL +P ++ + +    A       V      ++   +   L +   T KN I IF   K
Sbjct: 336 EFLHDPVKVTIGSDDLAASVSVTQIVEVIEDRARDARIHALLQKYHYTRKNLILIFVLYK 395

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           K    +   L  +G++  AIHG+  Q+ R + + NFK G I L++A+D+AARGLDIP V 
Sbjct: 396 KEADRVERDLRYRGWNCAAIHGDRSQQQRNEAVENFKSGDIPLLIATDVAARGLDIPGVE 455

Query: 316 HVFNFDVPNRAENYIHRI 333
           +V N+  P   E+Y+HRI
Sbjct: 456 YVINYAFPLTIEDYVHRI 473


>gi|156838354|ref|XP_001642884.1| hypothetical protein Kpol_1007p10 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113461|gb|EDO15026.1| hypothetical protein Kpol_1007p10 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 605

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 137/410 (33%), Positives = 221/410 (53%), Gaps = 39/410 (9%)

Query: 2   DFADLGLSPKVVCAVLD--AGYVKPTPIQIKTIPLVLQRH------DVCGIAQTGTGKTA 53
           ++ +LGL P  +  VL     ++ P+PIQ  +IP + Q++      D+ GIA TG+GKT 
Sbjct: 182 NWDELGLIPNDLLEVLKNKLNFISPSPIQRISIPNICQKNGHSTNRDLMGIASTGSGKTL 241

Query: 54  SFVLPMLTILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKY-----GKNYNLT 102
           +FV+P+L  L     R      +  P+ LIL PTRELA Q+    +K       +   +T
Sbjct: 242 AFVIPILIKLLGTAIRPLSLKVIEGPKALILAPTRELAQQIQAEIKKILSLSSNELTKIT 301

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
              ++GG   E  +  L +G D+L+ TPGR++D      ++++N+  +V+DEAD+M+D G
Sbjct: 302 SICIVGGHSIEEISYDLSKGCDILVATPGRLIDCLESHLIVIDNVNTIVLDEADKMIDFG 361

Query: 163 FIPYIQNITSLVPFTR-----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           F   +  I S +         Q ++F+ATMT  +++++  +L+N   + +    ++ E +
Sbjct: 362 FEDQVTTILSKLQINEMKDNLQKIMFTATMTPTIERIANGYLRNASYVSI---GNSEEFV 418

Query: 218 EHCFVATYAQYSKKCAL--LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCA 274
            H     Y   ++      L+Q+L+        IIF N KK    L   L E+  F V  
Sbjct: 419 PHINQLVYYSPNENSKFRKLKQVLELYPPPV--IIFINYKKTADWLATKLQEETNFKVTT 476

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG+  Q  R   L+  + G +Q+M+A+++AARG+DIP+VG V N+ + +  E+YIHRIG
Sbjct: 477 LHGSKSQDQREYSLNLLRTGRVQIMIATNVAARGIDIPNVGLVVNYQISDSFEDYIHRIG 536

Query: 335 RTGRAGRHGKAFTLVA-KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
           RTGRAG+ G A + V   ED K I  + K + KK      D  S N P++
Sbjct: 537 RTGRAGKEGTAISFVGDDEDPKVIIELFKYMTKK------DKESKNKPVD 580


>gi|224142804|ref|XP_002324737.1| predicted protein [Populus trichocarpa]
 gi|118481206|gb|ABK92554.1| unknown [Populus trichocarpa]
 gi|222866171|gb|EEF03302.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 198/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDAMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     V   + L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 102 LDYD---VVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSAG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V K+D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     V+ L  +++ L
Sbjct: 394 IQRFYNVTVEELPSNVADL 412


>gi|156103333|ref|XP_001617359.1| ATP-dependent RNA helicase [Plasmodium vivax SaI-1]
 gi|148806233|gb|EDL47632.1| ATP-dependent RNA helicase, putative [Plasmodium vivax]
          Length = 717

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 135/399 (33%), Positives = 206/399 (51%), Gaps = 60/399 (15%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F+++     VV   L+A + +PT IQ  T P+ L   D+ G+A+TG+GKT +F LP ++ 
Sbjct: 280 FSEVNFHEAVVNH-LNAKFKEPTAIQKVTWPIALSGKDLIGVAETGSGKTLAFALPALMH 338

Query: 62  IL-----------EKGRARVRMPR------------------------------------ 74
           IL           E G    R  R                                    
Sbjct: 339 ILKQREGERKSGRESGLENAREHRLEQNQEDMGEEPSQEWNNEPTQGATQRSSGNDTHEA 398

Query: 75  -----TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
                 LIL PTREL  QV D  + + K  ++    + GG+P   Q   L++GAD+++ T
Sbjct: 399 ERTVYGLILLPTRELCMQVVDEIKAFEKELHIRSVAVYGGVPKYTQISNLKKGADIVVAT 458

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGR+LD    G + +     +VIDEADR+LDMGF   ++ I + V   +Q L F+AT  +
Sbjct: 459 PGRLLDLLESGVIHLLRCIYVVIDEADRLLDMGFEKQLKKIMTQVNRNKQLLFFTATWPE 518

Query: 190 ELQKVSENFLQ-NPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
           +++K++  F   +P +I++     TA + I+   V +    S            Q+   N
Sbjct: 519 QVRKLAYQFSSFDPVKIQIGKSELTANKNIQQSVVISS---SIDLKKKLLDWLKQNYEGN 575

Query: 248 GI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
            I IFC+ K+N  +LC  L    ++  AIHG+ +QR R +ILSN++     ++VA+D+A+
Sbjct: 576 KILIFCDTKRNCDSLCKELRYHQYNALAIHGDKEQRERDRILSNYRSDRCNILVATDVAS 635

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           RGLDI ++  V N+D+PN  E+YIHRIGRTGRAG+ G+A
Sbjct: 636 RGLDIKNISVVVNYDLPNTIEDYIHRIGRTGRAGQKGRA 674


>gi|145345534|ref|XP_001417262.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577489|gb|ABO95555.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 654

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 130/372 (34%), Positives = 201/372 (54%), Gaps = 18/372 (4%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +  LS  V   +   G+     IQ +T+ + L   DV G A+TG GKT +FVLP++  + 
Sbjct: 87  NFALSEPVKATLRKKGFDALFAIQAETLEIALSGKDVVGRARTGCGKTLAFVLPIVEEMA 146

Query: 65  K--------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           K         R + R P  ++L PTRELA QV  +F+  G ++      + GG P+  Q 
Sbjct: 147 KISPMPANGRRVQGRRPMCVVLAPTRELAKQVFADFDWIGNSFGFKSVCVYGGTPYREQE 206

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G DV+I TPGR+ DH  R  L+M+ ++  V+DEAD ML+MGF+  ++ I      
Sbjct: 207 MGLRGGCDVVIGTPGRMKDHLERKTLMMDKLKFRVLDEADEMLNMGFVDDVELILK-SSG 265

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEV----NTPSSTAETIEHCFVATYAQYSKKC 232
             QTLLFSAT+   ++ +++ FL+ P    V    +     +  ++H  +    Q+S + 
Sbjct: 266 DVQTLLFSATLPPWVKDIAKRFLK-PDYATVDLVGDQKQKASGAVQHMLLP--CQWSDRV 322

Query: 233 ALLQQLLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQ-GFSVCAIHGNIDQRSRMKILSN 290
            L+  +++S+       I+FC+ K++   LC +L+K+      A+HG++ Q  R  +L+ 
Sbjct: 323 DLVCDVIRSKAPGGGRVIVFCDTKRDCGELCDNLQKEIPKGAKALHGDVSQGQREVVLAG 382

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+E   Q++VA+D+AARGLDI  V  V   + P  AE YIHR GRTGRAG  G + TL  
Sbjct: 383 FREDKFQVLVATDVAARGLDITGVELVIQCEPPKDAETYIHRSGRTGRAGATGISVTLCT 442

Query: 351 KEDIKHIDAIEK 362
                 +  IE+
Sbjct: 443 PRSEWAVPNIER 454


>gi|309359591|emb|CAP32649.2| hypothetical protein CBG_13909 [Caenorhabditis briggsae AF16]
          Length = 835

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 123/366 (33%), Positives = 200/366 (54%), Gaps = 13/366 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +  LGL   +  A+   G+ +PTPIQ KTIP ++   DV  +++TG+GKTA+FV+PML  
Sbjct: 26  WQQLGLDHTIFKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L KGR   +  R L++ PTRELA Q     ++ G+   L  A L+GG   E Q   +   
Sbjct: 86  L-KGRD-TKGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDVLEDQFSTIHEN 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+L       L +  ++ +V DEADR+ +MGF   +      +P +RQTLL
Sbjct: 144 PDILLATPGRLLHVIVEMDLRLQFVQYVVFDEADRLFEMGFQDQLTETLKRIPESRQTLL 203

Query: 183 FSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSK--KCALLQQL 238
           FSAT+   L   ++  L +P   R++V+   S   ++  C      + S+   CA   + 
Sbjct: 204 FSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPDEKLSRCSICAEFGKF 263

Query: 239 LQSQD-------TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
            +S++         K  ++FC   K+V  +   L + G     ++  +D  +R + +  F
Sbjct: 264 RKSENFETRMDRENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKQNIQKF 323

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
            E    ++V +D+AARG+DIP +  V N   P++A+ Y+HR+GR  RAGR G A +L+A 
Sbjct: 324 HEKQNNILVVTDVAARGVDIPLLDTVINLHFPSKAKLYVHRVGRVARAGRSGTAISLIAN 383

Query: 352 EDIKHI 357
           +++ ++
Sbjct: 384 DELPYL 389


>gi|224476666|ref|YP_002634272.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421273|emb|CAL28087.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 446

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 130/383 (33%), Positives = 204/383 (53%), Gaps = 17/383 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL PK++ AV D  + +PT IQ + IP +L+   + G +QTGTGK+ +F+LP++  
Sbjct: 7   FEQFGLDPKLIDAVSDLNFNQPTEIQQRVIPKILKGTSIIGQSQTGTGKSHAFLLPLI-- 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            E+    ++ P+ +++ PTRELA Q+   A +  ++ K+  + V+L IGG  FE   ++ 
Sbjct: 65  -ERIDPSIQEPQAIVVAPTRELAQQLYKAAQHLTEFKKD--VKVSLFIGGTDFERDKQRC 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++I TP RI D    G L  +    LV+DEAD M+D+G I  + +I + +     
Sbjct: 122 NVQPQLVIGTPTRINDLSKDGTLHAHLANYLVVDEADLMIDLGLIEDVDHIAARLEDNAN 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT--YAQYSKKCALLQQ 237
             +FSAT+   L      +L  P+ IEVN+ +   + I+   + T   A+  K  AL+  
Sbjct: 182 IAVFSATIPKSLHPFLNKYLNQPELIEVNSKTQNKKNIDFYLIPTKGAAKVDKTKALIDI 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L          IIFCN +++   L   L   G  +  IHG +  R R + +   +    Q
Sbjct: 242 L-----NPYLCIIFCNSRESADELAEELIADGLKIGMIHGGLSPRERKQQMKRIRNLDFQ 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++ASDLA+RG+DI  V HV NFDVP   + + HR+GRTGR    G+AFTL   ++ + +
Sbjct: 297 FVIASDLASRGIDIEGVSHVINFDVPKDIDFFTHRVGRTGRGQYKGEAFTLFTPDEEELV 356

Query: 358 DAIEK--LIEKKVDWLNGDLSSL 378
             IE      K VD  NG++  +
Sbjct: 357 GEIEDRGYQFKDVDLKNGEIKPI 379


>gi|260826097|ref|XP_002608002.1| hypothetical protein BRAFLDRAFT_74954 [Branchiostoma floridae]
 gi|229293352|gb|EEN64012.1| hypothetical protein BRAFLDRAFT_74954 [Branchiostoma floridae]
          Length = 430

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/354 (37%), Positives = 193/354 (54%), Gaps = 28/354 (7%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR 71
           V+ A+   G   PTPIQI+ +P +L   D+ GIA TG+GKT    LP          +  
Sbjct: 7   VIHALKKRGIHHPTPIQIQGLPAILSGRDMIGIAFTGSGKTLK-RLPF--------TKND 57

Query: 72  MPRTLILEPTRELAAQ----VADNFEKYGKNYN---------LTVALLIGGIPFEAQNKK 118
            P +LI+ P+RELA Q    +  N       Y+         +   L IGG   + Q ++
Sbjct: 58  GPYSLIICPSRELARQTHQFITHNMISRSDEYHFLYPIGMPAMRTMLCIGGESAKDQFEQ 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +RG  +++ TPGR++D  N+    ++    LV+DEADRM+DMGF   I+ I S     R
Sbjct: 118 SKRGVHMMVATPGRLMDMLNKKAFNLDTCRYLVLDEADRMIDMGFEEDIRTIFSYFKGQR 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM  ++Q  +   L  P  + VN   + A +++   V    +Y K+ A +  L
Sbjct: 178 QTLLFSATMPKKIQNFARTALVKP--VTVNVGRAGAASLD---VIQEVEYVKQEAKIVYL 232

Query: 239 LQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+  Q T    +IF  +K +V ++   L  +G    AIHG  DQ  R + +  F+EG   
Sbjct: 233 LECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEERTRAIEAFREGKKD 292

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           ++VA+D+A++GLD PD+ HV NFD+P   ENY+HRIGRTGR G+ G A T + K
Sbjct: 293 VLVATDVASKGLDFPDIQHVINFDMPEDIENYVHRIGRTGRCGKTGIATTFINK 346


>gi|170057770|ref|XP_001864629.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167877091|gb|EDS40474.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 798

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 135/368 (36%), Positives = 198/368 (53%), Gaps = 33/368 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L+  +   +  A Y  PTP+Q   IP+V+   DV   AQTG+GKTA+F++P+L  
Sbjct: 296 FDDIELTEIIENNIKLANYDVPTPVQKYAIPIVMSGRDVMACAQTGSGKTAAFLVPILNQ 355

Query: 63  LEKG-----------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
           + K              R + P  L+L PT+          +K+     +   +L GG  
Sbjct: 356 MYKHGVTPPPQNRPFNRRKQYPLGLVLAPTQS---------KKFCYRSRMRPCVLYGGNN 406

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q ++L+RG  +++ TPGR+ D   RGK+ ++NI  LV+DEADRMLDMGF P I+ I 
Sbjct: 407 TQEQMRELDRGCHLVVATPGRLEDMIMRGKVGLDNIRFLVLDEADRMLDMGFEPQIRRIV 466

Query: 172 --SLVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
             S +P T  RQTL+FSAT    +Q+++ +FL N   + V    ST+  I       + +
Sbjct: 467 EESKMPQTGERQTLMFSATFPKAIQELASDFLHNYIFLAVGRVGSTSVNITQSIF--WVE 524

Query: 228 YSKKCALLQQLLQSQDTMKNG-------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
            + K + L  LL +     +G       +IF   KK+   L   L      V +IHG+  
Sbjct: 525 ENDKRSHLLDLLSNIKDQNDGDEKDCLTLIFVETKKSADALEDFLYNYNHPVTSIHGDRT 584

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q+ R + L  F+ G   ++VA+ +AARGLDIP+V HV NFD+P   E Y+HRIGRTGR G
Sbjct: 585 QKEREEALKFFRSGRCPVLVATAVAARGLDIPNVKHVINFDLPAEVEEYVHRIGRTGRMG 644

Query: 341 RHGKAFTL 348
             G A + 
Sbjct: 645 NLGTATSF 652


>gi|72546967|ref|XP_843148.1| ATP-dependent DEAD-box RNA helicase [Leishmania major strain
           Friedlin]
 gi|323363662|emb|CBZ12667.1| putative ATP-dependent DEAD-box RNA helicase [Leishmania major
           strain Friedlin]
          Length = 405

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 123/369 (33%), Positives = 200/369 (54%), Gaps = 8/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +  L  ++   + + G+ KP+P+Q + IP+ LQ  DV   A+ GTGKTASFV+P  
Sbjct: 30  VNFEEYALRRELQMGIFEKGFEKPSPVQEEAIPVALQGKDVLARAKNGTGKTASFVIP-- 87

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
            +LEK   R    + L++ PTRELA Q A   ++ GK+   L V +  GG        +L
Sbjct: 88  -VLEKVDTRELYVQALLMVPTRELALQTAQVTKELGKHIPGLEVMVTTGGTTLRDDILRL 146

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LD  ++  + +++  ILV+DEAD++L   F+  I ++ + +P   Q
Sbjct: 147 TSKVHILVATPGRVLDLASKKAVDLSHCHILVLDEADKLLSQEFMEIIDDLYTYLPSQLQ 206

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           ++LFSAT    ++  +E  L NP  I +    +     ++     + +  +K   L  L 
Sbjct: 207 SMLFSATFPVTVKTFAERHLHNPYEINLMDELTLKGVTQY---YAFVEERQKIHCLNTLF 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++  +   IIFCN    V  L   + + G+S   IH  + Q+ R ++  +F+EG  + +
Sbjct: 264 -NKLQINQSIIFCNSVNRVELLAKKITQLGYSCYYIHARMQQQHRNRVFHDFREGHCRNL 322

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A   V  +D  ++  
Sbjct: 323 VCSDLITRGIDIQAVNVVINFDFPKYAETYLHRIGRSGRFGHLGVAINFVTYDDRYNVYR 382

Query: 360 IEKLIEKKV 368
           IE+ ++ ++
Sbjct: 383 IEQELDTEI 391


>gi|259483726|tpe|CBF79353.1| TPA: ATP-dependent RNA helicase dbp3 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5AWA6] [Aspergillus
           nidulans FGSC A4]
          Length = 413

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 128/342 (37%), Positives = 196/342 (57%), Gaps = 9/342 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ L  S K + A LD G+  PT IQ  T PL+    DV GIA+TG+GKT +F LP L
Sbjct: 74  ISFSFLPPSNKDLYAPLD-GFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCL 132

Query: 61  T-ILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +L+ K + +   P  +++ PTRELA Q+ D   K+ +  ++ VA + GG+  + Q + 
Sbjct: 133 KKVLDLKTKQKSCRPLAVVISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREA 192

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
           L+  A V++ TPGR+ D  N G L +  ++ LV+DEADRMLD GF   I++I S +P + 
Sbjct: 193 LKSAA-VVVATPGRLKDLQNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSK 251

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST---AETIEHCFVATYAQYSKKCAL 234
           RQT++F+AT    ++ ++  F+ +P  + +    S    A +     V     + K+  L
Sbjct: 252 RQTVMFTATWPPIVRNLASTFMTSPVTVTIGGDPSADPRANSRIKQVVEVVKPHEKEQRL 311

Query: 235 LQQLLQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +Q L + Q    + ++ FC  KK  + +   L  +GF V  IHG++ Q+ R + L  FK 
Sbjct: 312 VQILNRHQRGTPDKVLAFCLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEAFKS 371

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           G   ++VA+D+AARGLDIP V  V N   P   E+Y+HRIGR
Sbjct: 372 GAATVLVATDVAARGLDIPHVKLVVNVTFPLTVEDYVHRIGR 413


>gi|145349088|ref|XP_001418972.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579202|gb|ABO97265.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 413

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 124/379 (32%), Positives = 200/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDTMNLQENLLRGIYAYGFEKPSAIQQRGIVPFSKGFDVIQQAQSGTGKTATFCAGILQS 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     V   + L+L PTRELA Q+       G    +     +GG       + L+ G
Sbjct: 102 LDYS---VHECQALVLAPTRELAQQIEKVMRALGDYLQVKCHACVGGTSVREDTRILQAG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  ++I+I  +DEAD ML  GF   I +I +L+P   Q  +
Sbjct: 159 VHVIVGTPGRVYDMLRRRALKSDSIKIFALDEADEMLSRGFKDQIYDIFTLLPPKVQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSAT+  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATLPPEALEITRKFMTKPVRILVKRDELTLEGIKQFYVNVDKEQWKLDTLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L  ++  + F+V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFANTRRKVDWLTDNMRARDFTVSATHGDMDQNTRDVIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G +   V  ED + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTAEDERLLQD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++  +  ++ L  +++ L
Sbjct: 394 IQRFYQTVIEELPSNVADL 412


>gi|332641920|gb|AEE75441.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 407

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 126/362 (34%), Positives = 193/362 (53%), Gaps = 11/362 (3%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  L+    + +    L+L 
Sbjct: 53  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQ---ALVLA 109

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA Q+       G    + V   +GG       + L+ G  V++ TPGR+ D   R
Sbjct: 110 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLKR 169

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
             L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  +FSATM  E  +++  F+
Sbjct: 170 QSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFM 229

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLLQSQDTMKNGIIFCNQKK 256
             P RI V     T E I+  +V    +  K    C L + L  +Q      +IF N ++
Sbjct: 230 SKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQ-----SVIFVNTRR 284

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
            V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ +DL ARG+D+  V  
Sbjct: 285 KVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL 344

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
           V NFD+P + ENY+HRIGR+GR GR G A   V ++D + +  I+K     V+ L  +++
Sbjct: 345 VINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVVEELPSNVA 404

Query: 377 SL 378
            L
Sbjct: 405 DL 406


>gi|240279271|gb|EER42776.1| ATP-dependent RNA helicase DHH1 [Ajellomyces capsulatus H143]
 gi|325089541|gb|EGC42851.1| ATP-dependent RNA helicase DHH1 [Ajellomyces capsulatus H88]
          Length = 514

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 193/362 (53%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 46  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 105

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E+   +    + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 106 ---ERTNPKNSKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLN 162

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   +++    V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 163 EAVHIIVGTPGRILDLASKGVADLSDCSTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 222

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  ++NP  I +     T   I   +   + +  +K   L  L  
Sbjct: 223 MLFSATFPLIVKSFKDKHMRNPYEINL-MDELTLRGITQYYA--FVEEKQKVHCLNTLF- 278

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 279 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQHNRNRVFHDFRNGVCRNLV 338

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 339 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRYNLYKI 398

Query: 361 EK 362
           E+
Sbjct: 399 EQ 400


>gi|303256348|ref|ZP_07342364.1| RNA helicase DeaD [Burkholderiales bacterium 1_1_47]
 gi|302861077|gb|EFL84152.1| RNA helicase DeaD [Burkholderiales bacterium 1_1_47]
          Length = 510

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/300 (37%), Positives = 175/300 (58%), Gaps = 6/300 (2%)

Query: 76  LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           LIL PTREL  QV++    + ++  + V  + GG  +  Q K L RG  +++ TPGR LD
Sbjct: 2   LILTPTRELCIQVSEAINSFARSSGVYVLPVYGGQDYSRQIKALSRGVQIVVATPGRALD 61

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
           H  RG L +  I+ +V+DEAD MLDMGF   ++ I + +P  RQT LFSAT+  ++ K++
Sbjct: 62  HIRRGTLNLTEIKAVVLDEADEMLDMGFAEDLEAIFAALPEKRQTALFSATLPPKIAKIA 121

Query: 196 ENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           EN L +   I +     P      ++    A     + K A L ++L  + + +  I+F 
Sbjct: 122 ENHLHDAFHILIPKEKVPEGEQPKVKQS--AYIVGRNHKTAALGRILDIE-SPRLAIVFA 178

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             +  V  L  SL  +G+SV  +HG +DQ  R +++   +   + ++VA+D+AARG+DI 
Sbjct: 179 RTRNEVDELAESLRGRGYSVEPLHGGLDQAQRDRVMKRARAEQVDVIVATDVAARGIDID 238

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
            + HV NF +P+ AE Y+HRIGRTGRAGR G A T++   + + +  IE+L ++K+  L+
Sbjct: 239 HLTHVINFGIPSSAETYVHRIGRTGRAGREGTAITILEPRESRLLKNIERLTKRKITLLS 298


>gi|261188573|ref|XP_002620701.1| ATP-dependent RNA helicase DHH1 [Ajellomyces dermatitidis SLH14081]
 gi|239593185|gb|EEQ75766.1| ATP-dependent RNA helicase DHH1 [Ajellomyces dermatitidis SLH14081]
 gi|239613245|gb|EEQ90232.1| ATP-dependent RNA helicase DHH1 [Ajellomyces dermatitidis ER-3]
 gi|327357431|gb|EGE86288.1| ATP-dependent RNA helicase DHH1 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 507

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 192/362 (53%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 46  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 105

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E+   +    + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 106 ---ERTNPKNSKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLN 162

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 163 EAVHIIVGTPGRILDLASKGVADLSECSTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 222

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  ++NP  I +     T   I   +   + +  +K   L  L  
Sbjct: 223 MLFSATFPMIVKSFKDKHMRNPYEINL-MDELTLRGITQYYA--FVEEKQKVHCLNTLF- 278

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 279 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQHNRNRVFHDFRNGVCRNLV 338

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 339 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRYNLYKI 398

Query: 361 EK 362
           E+
Sbjct: 399 EQ 400


>gi|328848613|gb|EGF97819.1| hypothetical protein MELLADRAFT_51140 [Melampsora larici-populina
           98AG31]
          Length = 602

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 126/339 (37%), Positives = 188/339 (55%), Gaps = 18/339 (5%)

Query: 24  PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-----PRTLIL 78
           PTPIQ++ +P+ L   D+ GIA TG+GKT +F LP+L    +   ++       P  +I+
Sbjct: 188 PTPIQMQGLPVALSGRDMIGIAFTGSGKTLAFSLPLLLFALEAEKKLPFIQGEGPVGIIV 247

Query: 79  EPTRELAAQVADNF-------EKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
            P+RELA Q  +          + GK   +   L IGGI    Q+  + +G  +++ TPG
Sbjct: 248 CPSRELARQTYETIVAMALACAQSGKYPQVGTLLCIGGISMADQSHVMSKGFHIVVATPG 307

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+ D   + K  ++N + L +DEADRM+DMGF   ++NI S     RQTLLFSATM   +
Sbjct: 308 RLQDMLEKRKFNLDNCKYLCLDEADRMVDMGFEEDMRNIMSFFKRQRQTLLFSATMPKTI 367

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS-QDTMKNGII 250
           +  +EN L  P  + VN   + A  ++   V    +Y K+ A +  LL+  Q T    II
Sbjct: 368 RNFAENSLVKP--VVVNVGRAGAANLD---VIQEVEYVKQEAKMVYLLECLQKTPPPVII 422

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F + K  V ++   L  +G    AIHG+  Q  R   + +FK G   +MVAS +A++GLD
Sbjct: 423 FSDNKNEVDDIQEYLLLKGVEAVAIHGSKTQEEREYAIKSFKSGKKDVMVASGVASKGLD 482

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
             ++ HV NF +P   ENY+H+IGRTGR+G+ G A T +
Sbjct: 483 FAEIQHVINFTMPGEIENYVHQIGRTGRSGKTGIATTFI 521


>gi|51593782|gb|AAH80729.1| Ddx10 protein [Mus musculus]
          Length = 744

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 135/378 (35%), Positives = 212/378 (56%), Gaps = 22/378 (5%)

Query: 2   DFADLGLSPK-VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           DF  + L PK  +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P+L
Sbjct: 5   DF-QISLCPKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 63

Query: 61  TILEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L     R++   T     LI+ PTRELA Q  +   K GKN++ +  L+IGG   + +
Sbjct: 64  EAL----YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHE 119

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
            +++    ++L+CTPGR+L H +        N+++LV+DEADR+LDMGF   +  I   +
Sbjct: 120 AERI-NNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENL 178

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKC 232
           P  RQTLLFSAT T  ++ ++   L++P+ + V+  +  ST  T+E  ++    +  +K 
Sbjct: 179 PKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYI--ICELHQKI 236

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL--EKQGFSVCAIHGNIDQRSRMKILSN 290
           ++L   L+S    K  I+F +  K V  L       + G S+ A+HG   Q  RM++ + 
Sbjct: 237 SVLFSFLRSH-LKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNE 295

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F      ++ A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++ 
Sbjct: 296 FVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILL 355

Query: 351 KEDIKHIDAIEKLIEKKV 368
             + + +  +++L++KKV
Sbjct: 356 PSEEQGM--VQQLLQKKV 371


>gi|332293260|ref|YP_004431869.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171346|gb|AEE20601.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 446

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 201/362 (55%), Gaps = 10/362 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61
           F  LG+   +  A+       PT IQ + IP +L  + DV  +AQTGTGKT +F +P+L 
Sbjct: 5   FTALGVMDAIQEALKSLEITSPTDIQQQAIPAMLTSKKDVIALAQTGTGKTVAFGVPLLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
           ++++     +    +IL PTREL  Q+  N      +   +  A+  GG+P + Q ++L+
Sbjct: 65  LIDRTNPTTQ---AVILVPTRELGQQIQSNIAALAAHLPEVRTAVFYGGVPVKDQIERLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             A +++ TPGR++D   R  + +     LV+DEAD M+       +  I + +P  R+T
Sbjct: 122 EPAQIIVATPGRLIDLMERQAINITQANYLVLDEADEMVS-SLKDSLDTIVTAMPNNRRT 180

Query: 181 LLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L SATM   ++++ +N+L +NP  +     +  ++ I H +V    +  +K  +L   L
Sbjct: 181 FLLSATMPGAIKQIVQNYLSKNPIEVSAEMATLGSQKITHEYVVV--EPIEKLDVLMHFL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+   + GIIFC  K  V  L  +L    FS  AIHG++ Q  R +++  F+EG I ++
Sbjct: 239 NSR-IGQRGIIFCKTKAAVNKLAKNLAINKFSSGAIHGSLSQPIRDRMMGQFREGHIDIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+D+ ++ +V N+ +P   + Y+HR GRT RAG  G A T++ +E++K I  
Sbjct: 298 VATDLAARGIDVKEIEYVVNYHLPEFYDMYVHRSGRTARAGATGYALTILQEEEVKEIPE 357

Query: 360 IE 361
            E
Sbjct: 358 FE 359


>gi|225559536|gb|EEH07818.1| ATP-dependent RNA helicase DHH1 [Ajellomyces capsulatus G186AR]
          Length = 511

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 193/362 (53%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 46  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 105

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E+   +    + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 106 ---ERTNPKNSKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLN 162

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   +++    V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 163 EAVHIIVGTPGRILDLASKGVADLSDCSTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 222

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  ++NP  I +     T   I   +   + +  +K   L  L  
Sbjct: 223 MLFSATFPLIVKSFKDKHMRNPYEINL-MDELTLRGITQYYA--FVEEKQKVHCLNTLF- 278

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 279 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQHNRNRVFHDFRNGVCRNLV 338

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 339 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRYNLYKI 398

Query: 361 EK 362
           E+
Sbjct: 399 EQ 400


>gi|74656036|sp|Q58Z64|DHH1_CRYNV RecName: Full=ATP-dependent RNA helicase VAD1; AltName:
           Full=Virulence-associated DEAD box protein 1
 gi|54873506|gb|AAV41010.1| virulence associated DEAD box protein 1 [Cryptococcus neoformans
           var. grubii]
 gi|55982655|gb|AAV69745.1| virulence-associated DEAD Box protein [Cryptococcus neoformans var.
           grubii]
          Length = 616

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 125/367 (34%), Positives = 195/367 (53%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL  +++  +  AG+ +P+PIQ + IP+ L   D+   A+ GTGKTASF++P L  
Sbjct: 38  FEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNR 97

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +    + ++    LIL PTRELA Q +   +  G +  NL V +  GG        +L++
Sbjct: 98  INTSLSHIQ---ALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQ 154

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD  ++G   +N   I V+DEAD++L   F+P I+   +L P  RQ +
Sbjct: 155 PVHILVGTPGRILDLGSKGIAGLNKCGIFVMDEADKLLSEDFMPVIEQTLALCPQERQVM 214

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++  +  +  P  I +    +     ++     Y + S+K   L  L  S
Sbjct: 215 LFSATFPWTVKEFKDQHMVQPYEINLMDELTLKGVTQYY---AYVEESQKVHCLNTLF-S 270

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S    H  + Q  R ++  +F+ G  + +V 
Sbjct: 271 KLQINQSIIFCNSTNRVELLAKKVTELGYSCFYSHAKMQQAHRNRVFHDFRNGMTRNLVC 330

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE+Y+HRIGR+GR G  G A +L+  ED  ++  IE
Sbjct: 331 SDLLTRGIDIQAVNVVINFDFPRTAESYLHRIGRSGRFGHLGLAISLLTLEDRHNLYRIE 390

Query: 362 KLIEKKV 368
             +  ++
Sbjct: 391 SELGTEI 397


>gi|45185939|ref|NP_983655.1| ACR253Cp [Ashbya gossypii ATCC 10895]
 gi|74694768|sp|Q75BL8|IF4A_ASHGO RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|44981729|gb|AAS51479.1| ACR253Cp [Ashbya gossypii ATCC 10895]
          Length = 396

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 128/377 (33%), Positives = 208/377 (55%), Gaps = 7/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L   ++  +   G+V P+ IQ + I  +++ HDV   AQ+GTGKT +F +  L  
Sbjct: 24  FDELKLKEVLLRGIYGYGFVDPSAIQQRAILPIIEGHDVLAQAQSGTGKTGTFSIAALQR 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++    ++ P+ LIL PTRELA Q+         + ++ V   IGG       + L  G
Sbjct: 84  IDES---IKAPQALILAPTRELALQIQKVVMALALHMDVKVHACIGGTDPREDAEALRAG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A +++ TPGR+ D   R     ++I++ ++DEAD ML  GF   I  I +++P T Q +L
Sbjct: 141 AQIVVGTPGRVFDMIERRNFKTDHIKMFILDEADEMLSSGFKEQIYKIFTMLPPTTQVVL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQQLLQS 241
            SATM  E+  V++ F+  P RI V   + T E I+  ++   ++ Y   C  L  L  S
Sbjct: 201 LSATMPKEVLDVTDKFMNKPVRILVKKDALTLEGIQQYYINVESEEYKYDC--LSDLYDS 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   L    F+V AI+ ++ Q  R  I+  F+ G+ +++++
Sbjct: 259 I-SVTQAVIFCNTRRKVEELTKRLTDDSFTVSAIYSDLPQAQRDTIMKEFRTGSSRILIS 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+PN  ENYIHRIGR GR GR G A  LV   D+  +  +E
Sbjct: 318 TDLLARGIDVQQVSLVINYDLPNNKENYIHRIGRGGRFGRKGVAINLVTDRDVGDMRELE 377

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ L  +++ L
Sbjct: 378 RFYSTQIEELPANIADL 394


>gi|255642429|gb|ACU21478.1| unknown [Glycine max]
          Length = 413

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 197/379 (51%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ +P+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G  + +    L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 102 LDYGLVQCQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
              ++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHTVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +     +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V  +D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTADDSRMLSD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     V+ L  +++ L
Sbjct: 394 IQKFYNVTVEELPSNVADL 412


>gi|269955100|ref|YP_003324889.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269303781|gb|ACZ29331.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 503

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/357 (35%), Positives = 194/357 (54%), Gaps = 4/357 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F DLGL   VV ++ + G   P PIQ  ++P  L   DV G  +TG+GKT +F LP++
Sbjct: 1   MNFTDLGLPMPVVASLAERGITSPFPIQAASLPDSLAGKDVLGRGRTGSGKTVAFALPVV 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T L  GR   R PR LIL PTRELA Q+        K   L   ++ GG+    Q   L+
Sbjct: 61  TRLAGGRRAPRRPRALILAPTRELALQIDATTAPLAKVMGLRTTVVFGGVAQSRQVTALD 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+LI  PGR+ D  N+  L ++ IEI V+DEAD M D+GF+P ++ +    P   Q 
Sbjct: 121 AGVDILIACPGRLEDLLNQRLLTLDGIEITVLDEADHMADLGFLPGVKRLMDRTPTKGQR 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ + +  + + +L  P    V+  ++    + H  +A  A  + K  +++QL  
Sbjct: 181 LLFSATLDNGVDVLVKRYLHQPVTHSVDEAAAPPPLMTHHVLA-VADAAAKRDVVRQL-- 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  T +  ++F   K +   L   L   G     +HGN+ Q +R + L+ F  G ++++V
Sbjct: 238 AAGTGRR-VLFMRTKHHAKKLAKQLTLDGVPAVDLHGNLGQGARERNLAAFTSGDVKVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           A+D+AARG+ + D+  V + D P   + Y+HR GRT RAG  G   T++  E  K +
Sbjct: 297 ATDIAARGIHVDDIELVVHVDPPAEHKAYLHRSGRTARAGSGGDVVTIMLPEQRKDV 353


>gi|229916313|ref|YP_002884959.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
 gi|229467742|gb|ACQ69514.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
          Length = 447

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/383 (33%), Positives = 210/383 (54%), Gaps = 15/383 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L P +V A+ +    KPT IQ + IP  L   D+ G +QTGTGKT +F+LP++  
Sbjct: 4   FQQFKLLPFMVDALTEKRITKPTDIQARIIPAALNGRDIIGKSQTGTGKTLAFLLPIVEA 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKY---GKNYNLTVALLIGGIPFEAQNKKL 119
           +    A V+    +++ PTRELA Q+ +  +       +Y +  +L++GG   E Q  K+
Sbjct: 64  INPEDASVQ---AIVVAPTRELAWQIHEELKSILIKNPDY-IKSSLIVGGTDRERQIDKM 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    ++I TPGRILD      L  + +   V+DEAD+MLDMGF+P +  I   +P   Q
Sbjct: 120 KNPPQLIIGTPGRILDLMKAQALFPHKVTHFVVDEADQMLDMGFLPEVDRIAQALPEKLQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++FSAT+ + L+   + +L +P+  E +     A  I+H  +    ++  +  L  ++ 
Sbjct: 180 TMVFSATIPENLEPFLKKYLHDPRFAEASPEHRVAPKIKHHVIPV--RHRDRKELTVEIA 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++ +     ++F N K+    L  S  + G +V  +HG++  R R + + +  +   Q +
Sbjct: 238 KAINPFV-CLVFTNTKQEADELETSFREAGLNVGTLHGDMQARRRKQAIKDINDAKYQYV 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+DLAARG+DI  V HV N  +P   + Y HR+GRTGRAG  G+A+TL   ED ++   
Sbjct: 297 IATDLAARGIDISGVSHVINHGIPKDLDFYTHRVGRTGRAGASGEAYTLY--EDHEN-GP 353

Query: 360 IEKLIEKKVDWLNGDL--SSLNP 380
           I +L E+  ++ + DL   S+ P
Sbjct: 354 INRLEERGFEFTHVDLRNGSIQP 376


>gi|58265490|ref|XP_569901.1| RNA helicase [Cryptococcus neoformans var. neoformans JEC21]
 gi|134108933|ref|XP_776581.1| hypothetical protein CNBC0740 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74686062|sp|Q5KJI2|DHH1_CRYNE RecName: Full=ATP-dependent RNA helicase DHH1
 gi|50259261|gb|EAL21934.1| hypothetical protein CNBC0740 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226133|gb|AAW42594.1| RNA helicase, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 625

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 193/361 (53%), Gaps = 8/361 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL  +++  +  AG+ +P+PIQ + IP+ L   D+   A+ GTGKTASF++P L  
Sbjct: 38  FEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNR 97

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           +    + ++    LIL PTRELA Q +   +  G +  NL V +  GG        +L++
Sbjct: 98  INTSLSHIQ---ALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQ 154

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD  ++G   +N   + V+DEAD++L   F+P I+   +L P  RQ +
Sbjct: 155 PVHILVGTPGRILDLGSKGIASLNKCGVFVMDEADKLLSEDFMPVIEQTLALCPQERQVM 214

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++  +  +  P  I +     T + +   +   Y + S+K   L  L  S
Sbjct: 215 LFSATFPWTVKEFKDQHMVQPYEINLMD-ELTLKGVTQYYA--YVEESQKVHCLNTLF-S 270

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S    H  + Q  R ++  +F+ G  + +V 
Sbjct: 271 KLQINQSIIFCNSTNRVELLAKKVTELGYSCFYSHAKMQQAHRNRVFHDFRNGMTRNLVC 330

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE+Y+HRIGR+GR G  G A +L+  ED  ++  IE
Sbjct: 331 SDLLTRGIDIQAVNVVINFDFPRTAESYLHRIGRSGRFGHLGLAISLLTLEDRHNLYRIE 390

Query: 362 K 362
            
Sbjct: 391 S 391


>gi|170030308|ref|XP_001843031.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167866923|gb|EDS30306.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 404

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/377 (35%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+GL  +++  +   G+ KP+ IQ + I   ++ HDV   AQ+GTGKTA+F +    
Sbjct: 32  NFDDMGLKEQLLRGIYAYGFEKPSAIQQRAIMPCIKGHDVIAQAQSGTGKTATFSI---A 88

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    +   + LIL PTRELA Q+       G          IGG       +KLE 
Sbjct: 89  ILQQIDTNIPECQALILAPTRELATQIQKVVIALGDYLQAQCHACIGGTNVRDDMRKLEM 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D  +R  L  N+I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 149 GCHIVVGTPGRVHDMISRNFLRTNHIKLFVLDEADEMLSRGFKDQIQDVFRMLPNDVQVI 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+ +VS +F++ P +I V     T E I+  ++    Q   K   L  L  +
Sbjct: 209 LLSATMPSEVLEVSTHFMREPVKILVKKEELTLEGIKQFYIDV-KQEGWKLGTLCDLYDT 267

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +  + F+V ++HG++DQR R  I+  F+ G+ ++++ 
Sbjct: 268 L-SITQAVIFCNTRRKVDQLTADMAAESFTVSSMHGDMDQRDRDLIMKQFRTGSSRVLIT 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V + D + +  IE
Sbjct: 327 TDLLARGIDVQQVSLVINYDLPTLRENYIHRIGRGGRFGRKGVAINFVTEADKRVLTDIE 386

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     ++ +  +L+ +
Sbjct: 387 KHYNTTIEEMPANLADM 403


>gi|313682309|ref|YP_004060047.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313155169|gb|ADR33847.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 450

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 119/330 (36%), Positives = 187/330 (56%), Gaps = 10/330 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           + + T IQ + +P++LQ+ D    A TG+GKT +F    L +LE+   +    ++LIL P
Sbjct: 22  FTQMTSIQSQALPVILQKKDCIAQAATGSGKTLAF---GLGVLERINPKSFGTQSLILCP 78

Query: 81  TRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           TRELA QVA           N+ V  L GG+P + Q   L+ GA +++ TPGR+L     
Sbjct: 79  TRELAEQVAKVIRSLASEIGNIKVLTLCGGVPMKGQIHSLKHGAHIIVGTPGRVLKLLQM 138

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
                  I+ +V+DEAD+M+DMGFI  I +I    P +RQ+LLFSAT  + +Q ++ +F+
Sbjct: 139 ETFDPAQIQTVVLDEADQMIDMGFIEDITSILGFTPPSRQSLLFSATFPESIQTITSDFM 198

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
           ++P  +      S  +  E  ++      + K   +  +LQ    + N IIFCN K +  
Sbjct: 199 KDPVMVTAEHSLSKPKIEEIAYLC-----NDKLPAISMVLQLHG-ITNTIIFCNTKVDAN 252

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            LC  L + G     +HG+++Q  R + +  F+  +  ++VA+D+A RG+DI  +  + N
Sbjct: 253 ALCEDLNRIGVHALTLHGDMEQFDRNEAIIQFRNLSAPILVATDVAGRGIDIEGLDAIIN 312

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++VP + E Y HRIGRTGRAG++G A TLV
Sbjct: 313 YEVPIQNERYTHRIGRTGRAGKNGIAITLV 342


>gi|168026095|ref|XP_001765568.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683206|gb|EDQ69618.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 413

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 200/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDVMGLHENLLRGIYAYGFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCSGILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    ++   + L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 102 LD---YQLLECQALVLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTSVREDQRILQAG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  ++I+  V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVYDMLRRNALRADSIKCFVLDEADEMLSRGFKDQIYDIFQLLPQKLQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P +I V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVKILVKRDELTLEGIKQFYVNVDREEWKLDTLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFINTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V KED + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKEDERMLQD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     V+ L  +++ L
Sbjct: 394 IQRFYNTVVEELPSNVADL 412


>gi|326431316|gb|EGD76886.1| hypothetical protein PTSG_08233 [Salpingoeca sp. ATCC 50818]
          Length = 777

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 121/341 (35%), Positives = 185/341 (54%), Gaps = 34/341 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +++ GL P+++  + D G+ +PTPIQ   +P+ L   D+CG+A+TG+GKT +FVLP+L  
Sbjct: 440 WSESGLDPRILEIIDDLGFKEPTPIQRAALPIGLTNRDICGVAETGSGKTLAFVLPLLQW 499

Query: 63  ------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 LE+ +     P  +IL P+REL  Q+ +   K+     +    +IGG   E Q 
Sbjct: 500 ILSLPKLEREQDIDNGPYAIILAPSRELVQQIEEQTRKFSDPLGVRTVAVIGGASREEQG 559

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L +G +V+I TPGR++D      L++N    +V+DEADRMLDMGF P +Q I   VP 
Sbjct: 560 FQLRQGCEVVIATPGRLIDVLENRYLVLNQCTYVVMDEADRMLDMGFEPAVQQILEHVPV 619

Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           T                         RQT+LF+ATM   + K++  +L+ P  I + T  
Sbjct: 620 TNQKPNTDEAEDEAFLLQDIKNKNKYRQTVLFTATMPPAVMKLANTYLRRPATIRIGTVG 679

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
              + +E   + T  Q +K+  L+ ++L+S+      IIF NQKK    L  SLEK G+ 
Sbjct: 680 KPVDRVEQRMILTTEQ-NKRNELV-KILRSEPEPPI-IIFVNQKKGCDVLARSLEKMGYR 736

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
              +HG   Q  R   L++ KEG   ++VA+D+A RG+DIP
Sbjct: 737 AATLHGGKGQDVREHALASLKEGYKDILVATDVAGRGIDIP 777


>gi|302818592|ref|XP_002990969.1| hypothetical protein SELMODRAFT_42150 [Selaginella moellendorffii]
 gi|300141300|gb|EFJ08013.1| hypothetical protein SELMODRAFT_42150 [Selaginella moellendorffii]
          Length = 421

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 142/403 (35%), Positives = 214/403 (53%), Gaps = 38/403 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L   +   +    +  PT +Q   IP+ L   D+   AQTG+GKTA+F  P++  
Sbjct: 15  FDDLSLHSILNDNIRQCRFTVPTLVQKYAIPICLAARDLMACAQTGSGKTAAFCFPIIEG 74

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQ-------------VADNFEKYGKNYNLT 102
           +        +GR RV +P  LIL PTRELA Q             +AD   K+     + 
Sbjct: 75  ILREPVPGREGRRRVSIPLALILSPTRELAQQASIELSLPISFSFIADEAFKFCYQTGVR 134

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
           V ++ GG    + N     G D+L+ TPGR+ D  +R  + +  ++ L +DEADRMLDMG
Sbjct: 135 VGVVYGGTRLWSDNLG---GVDILVATPGRLNDLLDREMVELQKLKYLTLDEADRMLDMG 191

Query: 163 FIPYIQNIT--SLVPFT--RQTLLFSATMTDELQKVSENFLQNPKRI----EVNTPSSTA 214
           F P I+ I   S +P    RQTL+FSAT   ++Q+++  FL+         EV + +S  
Sbjct: 192 FEPQIRRIVEESGMPGAELRQTLMFSATFPKKIQRLAGEFLRKDYVFLAIGEVGSSTSRI 251

Query: 215 ETIEHCFVATYAQYSKKCALL--QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
           E  E  FV    +Y     ++  QQ+  +++ ++  ++F   K    +L   L  +G+  
Sbjct: 252 EQ-EVIFVQRNQKYDCLGMVIDRQQMHGTKNNVRKTLVFVGTKLKADDLEIWLRSRGYVA 310

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
            AIHG+  Q  R + L +FK G+  L+VA+++A+RG+DIPDV HV NFD+P   ++Y+HR
Sbjct: 311 IAIHGDKTQEERRRALKSFKSGSTPLLVATEVASRGIDIPDVSHVINFDLPTNIDDYVHR 370

Query: 333 IGRTGRAGRHGKAFTLVAKEDI----KHIDAIEKLIEKKVDWL 371
           IGRTGRAG+ G A  L    D     K +  +E   ++  DWL
Sbjct: 371 IGRTGRAGKRGFATALFCDGDAPLAHKLVHLLESCNQQVPDWL 413


>gi|260663391|ref|ZP_05864282.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
 gi|260552243|gb|EEX25295.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
          Length = 460

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 211/379 (55%), Gaps = 14/379 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L+  +  A+ D  + +PT +Q + IPL+L    V G ++TG+GKT +F+LP+ + 
Sbjct: 5   FADLHLADFLTPALKDLHFERPTAVQARVIPLILNGKSVVGQSRTGSGKTHAFLLPIFSQ 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKL- 119
           L      V+    +I  P+RELA Q+ +  ++  +     LT+   +GG   E Q ++L 
Sbjct: 65  LAPNNQTVQ---AVITTPSRELAYQIYNAAKQLNRFATTPLTIHNYVGGTDKEHQVEQLN 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R   ++I TPGRILD  N   L ++     VIDEAD  LDMGF+  +  I +  P   Q
Sbjct: 122 RRQPQLVIGTPGRILDLINSQALDIHTASQFVIDEADMTLDMGFLETVDQIAARFPEKLQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++FSAT+   L+   + +L+NP   E+ T +     +E+  ++T  +   K  L+ +LL
Sbjct: 182 MMVFSATIPQGLRPFLKKYLENPVIEEIPTETVINPNVENWLMSTKGR--DKNDLVYRLL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     ++F N +     L + L+++G  V  IHG ++ R+R +++   ++   Q +
Sbjct: 240 TLGDPYL-ALVFANTRDRATELANYLQERGLKVALIHGGLEPRARKRMMRQIRDMDYQYI 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           VA+DLAARG+D+  V  V N D+P+  E +IHR+GRTGRA   G A TL A  ED+    
Sbjct: 299 VATDLAARGIDLEGVSLVLNDDIPSDLEYFIHRVGRTGRANMAGTAITLYAPAEDV---- 354

Query: 359 AIEKLIEKKVDWLNGDLSS 377
            IEKL E+ + ++  DL +
Sbjct: 355 LIEKLEERGITFIPKDLKN 373


>gi|297847848|ref|XP_002891805.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337647|gb|EFH68064.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 412

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 199/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 41  FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    + +    L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 101 LDYTLVQCQ---ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAG 157

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 158 VHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 217

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 218 FSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLA 277

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 278 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 332

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   + ++D + +  
Sbjct: 333 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFITRDDERMLFD 392

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     V+ L  +++ L
Sbjct: 393 IQKFYNVVVEELPSNVADL 411


>gi|160331247|ref|XP_001712331.1| eif4A [Hemiselmis andersenii]
 gi|159765778|gb|ABW98006.1| eif4A [Hemiselmis andersenii]
          Length = 401

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 123/379 (32%), Positives = 204/379 (53%), Gaps = 6/379 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D+GL  +++  +   G+ KP+ IQ K I  ++ + D+   AQ+GTGKTA+FV+  L 
Sbjct: 23  EFSDMGLKKEILQGIFKYGFEKPSLIQQKGILPIIHKKDLIAQAQSGTGKTATFVIGTLQ 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-E 120
            ++    +V+    +++ P+RELA Q+   +E  GK   +     IGG   +   + L  
Sbjct: 83  NVQYDVFQVQ---CMVVCPSRELANQIKIVYESIGKFTKIRTQECIGGTKIKDDRQLLFS 139

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++I TPGR+ D  +  KLL   +E LVIDEAD M   GF   I  I   +P   + 
Sbjct: 140 KKPHIIIGTPGRLFDILSIEKLLSQKLEYLVIDEADEMFSRGFKVQIFRIFKYLPKECKI 199

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT+  E+ +V E F+ +P RI V     T E I+  ++    +  K  AL    + 
Sbjct: 200 GLFSATLPKEILQVIELFISDPVRILVKKEELTLEGIKQFYIPIEKEEWKLEALFD--IY 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  II+ N +K V  L + ++   FS+  IHG ++Q  R + + NF+ G  ++++
Sbjct: 258 RSIKAEQSIIYVNARKKVEWLANKMKLNDFSIAFIHGEMEQSERSETMKNFRFGKFRVLI 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL +RG+DI  V  V N+D+P   E+YIHRIGR+GR G+ G A   +++ D+ ++  I
Sbjct: 318 TTDLLSRGIDIEKVNFVINYDLPQYKESYIHRIGRSGRFGKKGVAINFLSRVDVDNLREI 377

Query: 361 EKLIEKKVDWLNGDLSSLN 379
           E      +  +  D +  +
Sbjct: 378 EAYYSTVIALIPEDFTDFD 396


>gi|224052119|ref|XP_002191015.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Taeniopygia guttata]
          Length = 589

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 144/419 (34%), Positives = 227/419 (54%), Gaps = 34/419 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F++  LS   V  +   G     P+Q+KT   +    DV   A+TGTGKT SF LP++  
Sbjct: 24  FSNFPLSQNTVKLLTARGIKYLFPVQVKTFQPIYDGKDVIAQARTGTGKTFSFALPLIEK 83

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             ++ + GR R R P+ L+L PTRELA QVA +F+   K   L+VA   GG P++ Q   
Sbjct: 84  LQSVTQDGR-RGRAPKVLVLVPTRELATQVAKDFKNLTKK--LSVACFYGGSPYKEQLDL 140

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+L+ TPGRI DH    KL +++++ +V+DE D MLDMGF   ++ I     + R
Sbjct: 141 LKSGIDILVGTPGRIQDHIQNSKLELSSVKHVVLDEVDHMLDMGFAEQVEEILG-SSYKR 199

Query: 179 ------QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYS 229
                 QTLLFSAT    +  V++ ++++  ++I++       TA T+EH  +A   + S
Sbjct: 200 GSENNPQTLLFSATCPRWVYDVAKKYMRDEYEQIDLIGKKAQRTATTVEH--LAIQCRSS 257

Query: 230 KKCALLQQLLQSQDTMKN-GIIFCNQKK--NVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           ++  +L  ++Q     +   I+FC  KK  N + +  SL++   S   +HG+I Q+ R  
Sbjct: 258 QRAGVLGDIIQVYSGSRGRTIVFCETKKEANELAMNASLKQDAQS---LHGDIPQKQREI 314

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G  ++++A+++AARGLDIP+V  V     P   ++YIHR GRTGRAGR G   
Sbjct: 315 TLKGFRNGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGRAGRTGICI 374

Query: 347 TLVAKED---IKHIDAIEKLIEKKV------DWLNGDLSSLNPPLEKIDIAQHNHARKN 396
            L  + +   +K ++    +  K+V      D +    S     LE +  A  ++ RK+
Sbjct: 375 CLFQRREEDLLKQVEHKAGITFKRVGVPSATDVIKASSSDAKKLLEAVPPAAVDYFRKS 433


>gi|326790482|ref|YP_004308303.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
 gi|326541246|gb|ADZ83105.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
           5427]
          Length = 470

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 139/450 (30%), Positives = 236/450 (52%), Gaps = 29/450 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L ++  ++  +   G   P PIQ  T+P  L+ HDV   + TG+GKT +FVLP+   
Sbjct: 5   FSALKINHSLIEGLKHQGITSPMPIQELTLPAFLEGHDVIIESHTGSGKTLAFVLPLF-- 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV--ALLIGGIPFEAQNKKLE 120
            EK     R  + +IL PT EL  Q+ +      KN +L +    +IG +  + Q KKL 
Sbjct: 63  -EKIDLTKREMQAIILAPTHELVMQIHEQITVLAKNSSLNIQSCPIIGEVNIDHQIKKLR 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ T GRILD   + K+  + I+ +++DEAD +LD      I+ +  L+P  RQ 
Sbjct: 122 DKPQIIVGTAGRILDLMTKKKITASTIQTVILDEADHLLDQNQANTIKKMLYLLPKDRQI 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLL 239
            L SA+M+    +  + F+ +P  +     +     I+H C V+   +  +K  +L++LL
Sbjct: 182 CLCSASMSPTAIEAVKTFMTHPVIVRTAEQTVLNPRIKHFCLVS---EQREKFDMLRKLL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +  T +  +IF +Q  +   L   L+  G SV  I G + + +R   L+ F+ G ++L+
Sbjct: 239 VATHTQR-ALIFVSQNTDTTTLVEKLKHHGHSVATISGKLTKEARKAALTAFRSGKVKLL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           ++SDL+ARGLD+PD+ HV +FD P  A  Y+HR GR+ R  + G +  L   +D+  I  
Sbjct: 298 ISSDLSARGLDVPDITHVIHFDFPLTAHEYLHRAGRSARGFKEGHSICLATPKDLGAIRI 357

Query: 360 IE----------KLIEKKV-DWLNGDL-SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
            E          KLI+ +V D   G++ +S +P  +K  + + + ++K N  P+   GF+
Sbjct: 358 FERDFNITIIPIKLIKGQVRDLKTGEIVASCDPSHQKPSLEK-SESKKRNKYPK---GFN 413

Query: 408 RRKKNYSSQKSHIP---LKESEKISKLQQD 434
             KK  S+  + +P   LK  +K +  ++D
Sbjct: 414 SEKKKNSTASTPVPEAKLKSHKKNTSFKED 443


>gi|294884821|gb|ADF47423.1| eukaryotic initiation factor-4A3 [Dugesia japonica]
          Length = 399

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 125/376 (33%), Positives = 192/376 (51%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +      KP+ IQ + I  +++  DV   AQ+GTGKT+   +  L +
Sbjct: 27  FNKMNLKEDLLRGIXXXXXEKPSAIQARAIKQIVKGRDVIAQAQSGTGKTSLIAISSLQL 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +     +R  + LIL PTRELA Q        G   N+     IGG       KKL+ G
Sbjct: 87  TD---INLRETQVLILSPTRELAQQTQKVILALGDYMNVQCHACIGGASMAQDMKKLDYG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L    I  LV+DEAD MLD GF   I  I   +P   Q +L
Sbjct: 144 QHIVSGTPGRVFDMMQRRNLRTGKISTLVLDEADEMLDKGFKEQIYQIYRYLPPGTQVIL 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  ++ +++  F+ NP RI V     T E I+  FV+   +  K   L    +   
Sbjct: 204 ISATLPHDILEMTSKFMTNPIRILVKRDELTLEGIKQYFVSVEREEWKFDTLCD--IYDT 261

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN K+ V  L   + +  F V +IHG++ Q  R +I   F+    ++++ +
Sbjct: 262 VTVTQVVIFCNTKRKVEWLTEKMRENNFPVSSIHGDMPQGERDEITRQFRALETRVLITT 321

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +D++ +  IE+
Sbjct: 322 DVWARGIDVQHVSLVINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKSDDVRILRDIEQ 381

Query: 363 LIEKKVDWLNGDLSSL 378
               ++D +  +++ L
Sbjct: 382 FYATQIDEMPMNMAEL 397


>gi|110740927|dbj|BAE98559.1| eukaryotic protein synthesis initiation factor 4A [Arabidopsis
           thaliana]
          Length = 412

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 198/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKT +F   +L  
Sbjct: 41  FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTTTFCSGVLQQ 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    + +    L+L PTRELA Q+       G    + V   +GG       + L+  
Sbjct: 101 LDFSLIQCQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAS 157

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 158 VHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 217

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 218 FSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLA 277

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 278 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 332

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V ++D + +  
Sbjct: 333 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFD 392

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     V+ L  +++ L
Sbjct: 393 IQKFYNVVVEELPSNVADL 411


>gi|79313227|ref|NP_001030693.1| EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1);
           ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|332641918|gb|AEE75439.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 415

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 124/354 (35%), Positives = 188/354 (53%), Gaps = 11/354 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 41  FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    + +    L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 101 LDFSLIQCQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAG 157

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 158 VHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 217

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 218 FSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLA 277

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 278 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 332

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           + +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V ++D
Sbjct: 333 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 386


>gi|156553129|ref|XP_001599839.1| PREDICTED: similar to eukaryotic translation initiation factor 4A
           [Nasonia vitripennis]
          Length = 423

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 133/379 (35%), Positives = 211/379 (55%), Gaps = 9/379 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++ HDV   AQ+GTGKTA+F    ++
Sbjct: 51  NFDDMNLKEELLRGIYAYGFEKPSAIQQRAILPCVKGHDVIAQAQSGTGKTATF---SIS 107

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL+K    +   + LIL PTRELA Q+       G   +      IGG       ++LE+
Sbjct: 108 ILQKIDTNINECQALILAPTRELAQQIQKVVIALGDFMHAQCHACIGGTNVREDMRRLEQ 167

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  +R  L  N+I++ V+DEAD ML  GF   I ++  L+P     +
Sbjct: 168 GVHVVVGTPGRVFDMISRRALRSNSIKLFVLDEADEMLSRGFKDQIYDVFKLLPXXXXVI 227

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS+ F++ P RI V     T E I+  F+    +  K    L  L   
Sbjct: 228 LLSATMPSDVLEVSKCFMREPVRILVKKEELTLEGIKQFFIYIEREDWK----LDTLCDL 283

Query: 242 QDTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            DT+     +IFCN ++ V  L   + ++ F+V A+HG+++QR R  I+  F+ G+ +++
Sbjct: 284 YDTLSITQAVIFCNTRRKVDWLTDHMHQKDFTVSAMHGDMEQRERDLIMRQFRTGSSRVL 343

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V  +D + +  
Sbjct: 344 ITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTSDDKRILKD 403

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+     +D +  +++ L
Sbjct: 404 IEQFYNTHIDEMPMNVADL 422


>gi|238478657|ref|NP_001154376.1| ATP binding / ATP-dependent helicase/ helicase/ nucleic acid
           binding [Arabidopsis thaliana]
 gi|332192807|gb|AEE30928.1| P-loop containing nucleoside triphosphate hydrolase-like protein
           [Arabidopsis thaliana]
          Length = 614

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 140/409 (34%), Positives = 213/409 (52%), Gaps = 43/409 (10%)

Query: 24  PTPIQ--IKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK-----GRARVRMPRTL 76
           P P++   +TIPL L++ DV GI+ TG+GKTA+FVLPML  + +        +   P  L
Sbjct: 223 PHPMRNWEETIPLGLEQRDVIGISATGSGKTAAFVLPMLAYISRLPPMREENQTEGPYAL 282

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           ++ PTRELA Q+ +   K+ +        + G    E Q  KL +G +++I TPGR+LD 
Sbjct: 283 VMVPTRELAHQIEEETVKFSRYLGFKAVSITGWESIEKQALKLSQGCEIVIATPGRLLDC 342

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-----------------RQ 179
             R  +++N    LV+DEADRM+DM F P +  +  ++P +                 R 
Sbjct: 343 LERRYVVLNQCNYLVLDEADRMIDMDFEPQVSEVLDVMPCSNLKPEKEDEELEEKKIYRT 402

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T +FSATM   +++++  FL+NP    V T   T + I    + T  + S K + L++L+
Sbjct: 403 TYMFSATMLLSVERLARKFLRNPV---VVTIGETTKFITQQVIMT--KESDKFSRLKKLI 457

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQG-FSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                 K  I+F N +  V  +  +LEK G   V  +H    Q  R   L  FK+    +
Sbjct: 458 DDLGDDKTAIVFVNTRNKVDYIVKNLEKVGRCRVTTLHAGKSQEQRDYSLEEFKKKRFNV 517

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V +D+  RGLDI D+  V N+D+PN  + Y HRIGRTGRAG+ G A T +  ED    D
Sbjct: 518 LVTTDVLGRGLDILDLAQVINYDMPNTMDLYTHRIGRTGRAGKTGVATTFLTLED---KD 574

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKSTGF 406
               L +K    LN + +SL PP    ++A+H  ++ K    P + + F
Sbjct: 575 VFYGLKQK----LN-ECNSLVPP----ELARHEASKFKPGTFPDRFSHF 614


>gi|146100408|ref|XP_001468856.1| ATP-dependent DEAD-box RNA helicase [Leishmania infantum]
 gi|134073225|emb|CAM71946.1| putative ATP-dependent DEAD-box RNA helicase [Leishmania infantum
           JPCM5]
          Length = 405

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 122/369 (33%), Positives = 200/369 (54%), Gaps = 8/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +  L  ++   + + G+ KP+P+Q + IP+ LQ  DV   A+ GTGKTASFV+P  
Sbjct: 30  VNFEEYALRRELQMGIFEKGFEKPSPVQEEAIPVALQGKDVLARAKNGTGKTASFVIP-- 87

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
            +LEK   R    + L++ PTRELA Q A   ++ GK+   L V +  GG        +L
Sbjct: 88  -VLEKVDTRESYVQALLMVPTRELALQTAQVTKELGKHIPGLEVMVTTGGTTLRDDILRL 146

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LD  ++  + +++  ILV+DEAD++L   F+  I ++ + +P   Q
Sbjct: 147 TSKVHILVATPGRVLDLASKKAVDLSHCHILVLDEADKLLSQEFMEIIDDLYTYLPSQLQ 206

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           ++LFSAT    ++  +E  L NP  I +    +     ++     + +  +K   L  L 
Sbjct: 207 SMLFSATFPVTVKTFAERHLHNPYEINLMDELTLKGVTQY---YAFVEERQKIHCLNTLF 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++  +   IIFCN    V  L   + + G+S   IH  + Q+ R ++  +F+EG  + +
Sbjct: 264 -NKLQINQSIIFCNSVNRVELLAKKITQLGYSCYYIHARMQQQHRNRVFHDFREGHCRNL 322

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A   V  +D  ++  
Sbjct: 323 VCSDLITRGIDIQAVNVVINFDFPKYSETYLHRIGRSGRFGHLGVAINFVTYDDRYNVYR 382

Query: 360 IEKLIEKKV 368
           IE+ ++ ++
Sbjct: 383 IEQELDTEI 391


>gi|325114139|emb|CBZ49697.1| putative ATP-dependent RNA helicase [Neospora caninum Liverpool]
          Length = 733

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 131/389 (33%), Positives = 200/389 (51%), Gaps = 19/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LG+   ++          P+PIQ+  +P  L+  +VCG+A TG+GKT  +  P+L 
Sbjct: 292 SFASLGVPRALIRTAASLHIFHPSPIQVLALPHALRGKNVCGLAPTGSGKTLGYCWPLLQ 351

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + +G     M   L+L P RELA QV D F  YG      V LL+GG     + K L++
Sbjct: 352 RIGRGEGHAFM--GLVLLPARELAIQVLDQFRIYGAQLGARVCLLLGGRDLVEEGKLLDQ 409

Query: 122 GADVLICTPGRILDHFN----RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              ++I TPGR+ DH      R K  ++ +++LV+DEADR+L   F   ++ I + VP +
Sbjct: 410 CPHIVIGTPGRVSDHVQNAPERMKKRLSLVDVLVLDEADRLLSDEFEDDLKTILACVPTS 469

Query: 178 ---RQTLLFSATMTDELQKVSENFLQNPKRI----EVNTPSSTAETIEHCFVATYAQYSK 230
              RQTLLFSAT++  L  +   F  +   +      N P+    +  + FV    Q   
Sbjct: 470 SQGRQTLLFSATVSPALLALQRRFGDDAMLLVDAHRTNQPALPNLSHFYLFVPARMQPVY 529

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
              LL+           GI+F    +    +C +LE    +   +H  ++QR R+  L  
Sbjct: 530 LLYLLEHT--PPFCSDRGIVFAGSVRQTQQICTTLEILKQAATPLHSLMEQRKRVACLEK 587

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+  T +L++ +D+A RGLD+P V  V N  VP +A++Y+HR GRT RAGR G A T V 
Sbjct: 588 FRSETSRLLICTDVAGRGLDLPRVEFVINMQVPGKAQDYVHRTGRTARAGRKGVALTFVD 647

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
            + ++ +  IE LI  ++      LSS+N
Sbjct: 648 PKSVRAVHRIEALINTQLQ----PLSSIN 672


>gi|125526999|gb|EAY75113.1| hypothetical protein OsI_03008 [Oryza sativa Indica Group]
          Length = 359

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 194/376 (51%), Gaps = 21/376 (5%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +G+   ++  +   G+ KP+ IQ + +  ++   DV   AQ+GTGKT+   L +  I++ 
Sbjct: 1   MGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDT 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
               VR  + LIL PTRELAAQ        G   N+ V   IGG       +KLE G  V
Sbjct: 61  A---VREVQALILSPTRELAAQTERVMLAIGDFINIQVHACIGGKSIGEDIRKLEHGVHV 117

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           +  TPGR+ D   R  L    I++L++DEAD ML  GF   I ++   +P   Q  L SA
Sbjct: 118 VSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQVCLISA 177

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLLQSQ 242
           T+  E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L    
Sbjct: 178 TLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL---- 233

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN K+ V  L   +    F+V A+HG++ Q+ R  I+  F+ G  ++++ +
Sbjct: 234 -TITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLITT 292

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
                     DV  V N+D+PN  E YIHRIGR+GR GR G A   V KEDI+ +  IE+
Sbjct: 293 ----------DVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILRDIEQ 342

Query: 363 LIEKKVDWLNGDLSSL 378
               ++D +  +++ L
Sbjct: 343 YYSTQIDEMPMNVADL 358


>gi|325969103|ref|YP_004245295.1| DEAD/DEAH box helicase [Vulcanisaeta moutnovskia 768-28]
 gi|323708306|gb|ADY01793.1| DEAD/DEAH box helicase domain protein [Vulcanisaeta moutnovskia
           768-28]
          Length = 364

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 119/351 (33%), Positives = 199/351 (56%), Gaps = 15/351 (4%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
           A+ D G+ +PT IQ   IP  L+  ++   A+TG+GKTA+++LP++  +       ++  
Sbjct: 15  ALFDFGFERPTEIQCLVIPRALKGVNIAMQARTGSGKTAAYLLPIMNSMVG-----KVTE 69

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
           +L++ PTRELA QVA  F  + K      A++ GG+P++ Q   + R A +++ TPGR+L
Sbjct: 70  SLVIVPTRELALQVASQFTYFNKYLGFRHAVVYGGVPYDEQISSV-RDASLVVATPGRLL 128

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D   +  + +  +   VIDE DRMLDMGFI  ++ I+SL    +Q    +AT+  E+ ++
Sbjct: 129 DLVRKSYIDLGRVNYFVIDEVDRMLDMGFIDDVRVISSLAHNRKQAYAATATLPREVYEL 188

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
             + ++NP  +   +       +E         +S+K +++ + L  +      I+F N 
Sbjct: 189 LRSIMRNPVFLRTGSHEYELPHVEQIVYLINGFWSEKYSVMTKELAGKS-----IVFTNT 243

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE--GTIQLMVASDLAARGLDIP 312
           ++    L   L ++ +++  +HG + Q  R ++L  F++  G I ++V +DLA+RGLDI 
Sbjct: 244 RERAYKLHRQLSREYYALL-LHGGMKQYMRERVLRRFRDEDGNI-VLVTTDLASRGLDII 301

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           DV  + NFDVPN  E YIHRIGRT R  R G+A TL  K +++ I+A   L
Sbjct: 302 DVELIINFDVPNNPETYIHRIGRTARLDRRGRAVTLATKNELQVINAAANL 352


>gi|170046083|ref|XP_001850610.1| ATP-dependent RNA helicase DBP8 [Culex quinquefasciatus]
 gi|167868981|gb|EDS32364.1| ATP-dependent RNA helicase DBP8 [Culex quinquefasciatus]
          Length = 516

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 143/424 (33%), Positives = 221/424 (52%), Gaps = 22/424 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL P +   +   G  +PTPIQ   IP +L   D  G A+TG+GKT +F LP+L  
Sbjct: 9   FADLGLKPWITKQLEKLGLRRPTPIQQACIPRILDGQDCIGAAKTGSGKTFAFALPILQR 68

Query: 63  LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L +       P +   LIL PT ELA Q+A+ F   G+   + V ++ GG     + ++L
Sbjct: 69  LSEE------PTSNFALILTPTHELAYQIAEQFSVAGQPMGVKVCVVTGGTDQLLEAQRL 122

Query: 120 ERGADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +    +++  PGR+  H           ++ LV+DEADR+L   F   ++ I   +P  R
Sbjct: 123 QARPHIVVAMPGRLAAHLTGCNTYSFRALQFLVVDEADRVLSGSFDEDLEAIKRFLPEKR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQ 236
           Q L FSAT+  E  + S  F       E +  S  +T ET++  ++   A Y +   L++
Sbjct: 183 QNLFFSATLK-EFMRESSVFPIAGGAFEWSEESEVATVETLDQRYILC-ADYDRDMVLIE 240

Query: 237 QLLQSQDTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            L + ++  +  N IIF N KK+   L  +L K GF    +HG + Q+ R+  L+ FK  
Sbjct: 241 TLRKFKEEKEDANVIIFTNSKKDCQVLSLTLNKIGFDNVCLHGFLRQKERVAALNRFKSK 300

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KED 353
            +++++A+D+A+RGLDIP+V  V N  +P     YIHR+GRT RAGR G A ++     D
Sbjct: 301 HVRILIATDVASRGLDIPNVQLVLNHRLPKVPNEYIHRVGRTARAGRKGLAISIFRFPRD 360

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           ++ +  IE LI  K+     D       +E+I   Q + AR+   +   +  FD R+ NY
Sbjct: 361 LEFLGEIEALINTKLTEHPVD----QRLVERI-FMQVSVARREAEMNLDNKDFDERRHNY 415

Query: 414 SSQK 417
             +K
Sbjct: 416 RRKK 419


>gi|9795619|gb|AAF98437.1|AC021044_16 Similar to RNA helicases [Arabidopsis thaliana]
          Length = 610

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 140/409 (34%), Positives = 213/409 (52%), Gaps = 43/409 (10%)

Query: 24  PTPIQ--IKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK-----GRARVRMPRTL 76
           P P++   +TIPL L++ DV GI+ TG+GKTA+FVLPML  + +        +   P  L
Sbjct: 219 PHPMRNWEETIPLGLEQRDVIGISATGSGKTAAFVLPMLAYISRLPPMREENQTEGPYAL 278

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           ++ PTRELA Q+ +   K+ +        + G    E Q  KL +G +++I TPGR+LD 
Sbjct: 279 VMVPTRELAHQIEEETVKFSRYLGFKAVSITGWESIEKQALKLSQGCEIVIATPGRLLDC 338

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-----------------RQ 179
             R  +++N    LV+DEADRM+DM F P +  +  ++P +                 R 
Sbjct: 339 LERRYVVLNQCNYLVLDEADRMIDMDFEPQVSEVLDVMPCSNLKPEKEDEELEEKKIYRT 398

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T +FSATM   +++++  FL+NP    V T   T + I    + T  + S K + L++L+
Sbjct: 399 TYMFSATMLLSVERLARKFLRNPV---VVTIGETTKFITQQVIMT--KESDKFSRLKKLI 453

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQG-FSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                 K  I+F N +  V  +  +LEK G   V  +H    Q  R   L  FK+    +
Sbjct: 454 DDLGDDKTAIVFVNTRNKVDYIVKNLEKVGRCRVTTLHAGKSQEQRDYSLEEFKKKRFNV 513

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V +D+  RGLDI D+  V N+D+PN  + Y HRIGRTGRAG+ G A T +  ED    D
Sbjct: 514 LVTTDVLGRGLDILDLAQVINYDMPNTMDLYTHRIGRTGRAGKTGVATTFLTLED---KD 570

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKSTGF 406
               L +K    LN + +SL PP    ++A+H  ++ K    P + + F
Sbjct: 571 VFYGLKQK----LN-ECNSLVPP----ELARHEASKFKPGTFPDRFSHF 610


>gi|1170506|sp|P41379|IF4A2_NICPL RecName: Full=Eukaryotic initiation factor 4A-2; Short=eIF-4A-2;
           AltName: Full=ATP-dependent RNA helicase eIF4A-2
 gi|19697|emb|CAA43513.1| nicotiana eukaryotic translation initiation factor 4A [Nicotiana
           plumbaginifolia]
          Length = 413

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 199/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+      +    L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 102 LDYSLVECQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V K+D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINSVTKDDERMLFD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     ++ L  +++ L
Sbjct: 394 IQKFYNVVIEELPANVADL 412


>gi|332372808|gb|AEE61546.1| unknown [Dendroctonus ponderosae]
          Length = 423

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 133/364 (36%), Positives = 206/364 (56%), Gaps = 9/364 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++ HDV   AQ+GTGKTA+F    ++
Sbjct: 51  NFDDMSLKEELLRGIYAYGFEKPSAIQQRAIIPCVKGHDVIAQAQSGTGKTATF---SIS 107

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    VR  + LIL PTRELA Q+       G   +      IGG       +KL+ 
Sbjct: 108 ILQQIDTTVRECQALILAPTRELAQQIQKVVIALGDFMSAQCHACIGGTNVREDMRKLDT 167

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L   +I++ V+DEAD ML  GF   I ++   +    Q +
Sbjct: 168 GVHVVVGTPGRVFDMINRRALRPQHIKMFVLDEADEMLSRGFKDQIHDVFKTLNADVQVI 227

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++  V+++F++ P RI V     T E I+  FV    +  K    L+ L   
Sbjct: 228 LLSATMPPDVLDVTKSFMRAPIRILVKKEELTLEGIKQFFVYVEKEDWK----LETLCDL 283

Query: 242 QDTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            DT+     +IFCN ++ V  L  S+ K+ F+V A+HG+++Q+ R  I+  F+ G+ +++
Sbjct: 284 YDTLSITQAVIFCNTRRKVDWLTESMHKKDFTVSAMHGDMEQKERDVIMRQFRTGSSRVL 343

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V ++D ++++ 
Sbjct: 344 ITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEDDKRNLND 403

Query: 360 IEKL 363
           IEK 
Sbjct: 404 IEKF 407


>gi|328868773|gb|EGG17151.1| hypothetical protein DFA_08133 [Dictyostelium fasciculatum]
          Length = 640

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 132/380 (34%), Positives = 208/380 (54%), Gaps = 10/380 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILEKGRA 68
           P  + ++L+  + KP+ IQ    P  L   D+ GI+QTG+GKT SF +P ++ IL + + 
Sbjct: 197 PAQIKSILNTNFEKPSVIQTIGWPSSLAGRDLLGISQTGSGKTLSFGIPAIMHILAQKQV 256

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
           +   P+ L++ PTREL+ Q+A     Y K   L  A L GG P   Q +++      ++ 
Sbjct: 257 KYFGPQVLVVAPTRELSVQIAQEMAPYLKACGLKFATLYGGDPKIKQIEQMRYKPQFVVG 316

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGRILD  N G L +     +V+DEADRML+MGF   I+ I S V    Q L ++AT  
Sbjct: 317 TPGRILDLANDGYLSLKRTSYVVLDEADRMLEMGFEDQIRQIFSNVRPDHQLLYWTATWP 376

Query: 189 DELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCAL---LQQLLQSQDT 244
            +++ ++  F++ P R++V N   S    I   F     +  K   L   L+ +   + T
Sbjct: 377 KKVEALANEFIKTPIRVQVGNGELSANPNITQNFTICETEADKTSKLIDVLEGIFTERPT 436

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFS-VCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
            K  +IF   K     L   +   G + + +IHG+  Q  R+ I++ FK   + ++VA+D
Sbjct: 437 AKV-LIFTMTKGGADKLADYIRSNGNARIDSIHGDKQQSRRIAIINAFKRDQLDILVATD 495

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK---EDIKHIDAI 360
           +A+RGLDI  +  V NF +PN++E+Y+HRIGRT RAG  G + +L++K    DI+ I  +
Sbjct: 496 VASRGLDIRTITDVINFSMPNQSESYVHRIGRTARAGASGYSHSLISKTSSNDIELIPDV 555

Query: 361 EKLIEKKVDWLNGDLSSLNP 380
             L+E+    +  DL +L P
Sbjct: 556 IDLLERANQPIPEDLKALAP 575


>gi|68472255|ref|XP_719923.1| hypothetical protein CaO19.6831 [Candida albicans SC5314]
 gi|68472490|ref|XP_719806.1| hypothetical protein CaO19.14123 [Candida albicans SC5314]
 gi|74656514|sp|Q5ADL0|PRP5_CANAL RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|46441642|gb|EAL00938.1| hypothetical protein CaO19.14123 [Candida albicans SC5314]
 gi|46441768|gb|EAL01063.1| hypothetical protein CaO19.6831 [Candida albicans SC5314]
          Length = 884

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 138/406 (33%), Positives = 215/406 (52%), Gaps = 30/406 (7%)

Query: 1   MDFADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           + ++ L L   +   + D   + KP+ IQ + +P +L   DV GIA+TG+GKT S+VLPM
Sbjct: 293 LKWSHLALPTNLSSVIHDKLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPM 352

Query: 60  LTILEKGRARV--RMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEA 114
           L  ++  +     + P  LIL PTRELA Q+     NF K  +N NL V    GG   E 
Sbjct: 353 LRHIQDQQFSKDNQGPIGLILSPTRELALQIEKEILNFTK--RNNNLRVCCCYGGSSIEN 410

Query: 115 QNKKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNIT 171
           Q  +L++G ++++ TPGR++D    N G++L +     +V+DEADRM D+GF P +  I 
Sbjct: 411 QINELKKGVEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKIL 470

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           + +   RQT+LFSAT   +++ +++  L +P  I V   S  A  I+   V       ++
Sbjct: 471 TQIRPDRQTVLFSATFPRKMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLFETSAEEQ 530

Query: 232 CALLQQLLQS-QDTMKNG---------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
               QQ ++   D + N          ++F  ++ +   L  +L    +   AIHG  DQ
Sbjct: 531 DKYKQQRVEKLHDILTNYQIEHPDSKILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQ 590

Query: 282 RSRMKILSNFK--EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
             R   +  F   +  I +++A+ +AARGLD+ ++G V NFD PN  E+Y+HR+GRTGRA
Sbjct: 591 MDRKYAIKEFASMDSGINILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRA 650

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
           G  G A T V+    K +  +       V  L    S ++P LE+I
Sbjct: 651 GAKGNAITFVSSSQPKEVFNL-------VKALKLSHSDIDPKLEEI 689


>gi|301601272|dbj|BAJ12168.1| DEAD box protein [Rana rugosa]
          Length = 736

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 142/428 (33%), Positives = 223/428 (52%), Gaps = 21/428 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   V  AGYVK TPIQ  +IP+++   D+   AQTG+GKTA+F+LP+L
Sbjct: 298 LTFEEANLCDTLAKNVCKAGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPIL 357

Query: 61  T-ILEKGRAR-----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++ KG        ++ P  +I+ PTREL  Q+  +  K+     +   ++ GG     
Sbjct: 358 AHLMMKGVQSSAFQALKEPEAIIVAPTRELINQIYLDARKFAYGTCVRPVVIYGGTQTFH 417

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI--TS 172
             K++  G ++L  TPGR+LD   + K+ +  +  LV+DEADRMLDMGF   I+N+  + 
Sbjct: 418 SLKQISEGCNILCATPGRLLDIIRKEKIGLTKLRFLVLDEADRMLDMGFREDIENLLRSP 477

Query: 173 LVPF--TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +P    RQTL+FSAT    +Q +++  L+      V      A +     V    ++ K
Sbjct: 478 GMPSKEERQTLMFSATFPSSIQSLAKXMLKPDYLFVVVGQVGGACSDVQQEVIEVEEFGK 537

Query: 231 KCALLQ--QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           K  L++  Q++ S+ TM    +F   KK    +   L ++     +IHG+ +QR R   L
Sbjct: 538 KDKLMEILQVIGSERTM----VFVKTKKKADFIATFLCQEKVPSTSIHGDREQRERETAL 593

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A + 
Sbjct: 594 RDFRTGQCPVIVATSVAARGLDIENVSHVINFDIPDDIDEYVHRIGRTGRCGNTGRAISF 653

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
             K      D  +++    V  L+     +   LE +  + H     +NP   K    D 
Sbjct: 654 FDKRG----DDEQRIARSLVKVLSDAHQDVPAWLEDVAFSAHGMP-AHNPRSNKFASTDD 708

Query: 409 RKKNYSSQ 416
           RK+  S Q
Sbjct: 709 RKRGDSRQ 716


>gi|168063959|ref|XP_001783934.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664528|gb|EDQ51244.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 413

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 200/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDVMGLHENLLRGIYAYGFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCSGILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    ++   + L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 102 LD---YQLLECQALVLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTSVREDQRILQAG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  ++I+  V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVYDMLRRNALRADSIKCFVLDEADEMLSRGFKDQIYDIFQLLPQKLQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P +I V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVKILVKRDELTLEGIKQFYVNVDREEWKLDTLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFINTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V KED + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKEDERMLQD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     ++ L  +++ L
Sbjct: 394 IQRFYNTVIEELPSNVADL 412


>gi|118359808|ref|XP_001013142.1| CLN3 protein [Tetrahymena thermophila]
 gi|89294909|gb|EAR92897.1| CLN3 protein [Tetrahymena thermophila SB210]
          Length = 1138

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 128/372 (34%), Positives = 202/372 (54%), Gaps = 12/372 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LG   +++  +   G+ KPT IQ + +P  L   D+ G+A+TG+GKT S++ P+L
Sbjct: 62  VSFGHLGFDEELMRQITKLGFEKPTQIQCQALPCGLSGRDIVGVAKTGSGKTVSYLWPLL 121

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +   R   +   P  LIL PTREL  QV    ++Y K YN++V  L+GG     Q K 
Sbjct: 122 IHILDQRELEKNEGPIGLILAPTRELCQQVYTESKRYAKIYNISVGALLGGENKHEQWKM 181

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G ++LI TPGR+++   +    +     +VIDEAD+M  MGF   I++I   +   R
Sbjct: 182 LKAGVEILIATPGRLMEMIQKKATNLRRCTYVVIDEADKMFSMGFEKQIRSIMQQIRPDR 241

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLF+AT+  ++Q +  + L+NP  I++   +   E I    +       K   +L  L
Sbjct: 242 QTLLFTATLKKKIQNLVMDVLRNPVTIKIGGENQANEDIRQEPIIFKDSNFKDQWILNNL 301

Query: 239 ---LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF-SVCAIHGNIDQRSRMKILSNFKEG 294
              LQ    +    IF N   N   L   ++++ +     +HG+  Q  R  I++ FK  
Sbjct: 302 NLCLQKGKVL----IFVNHITNCNKLSELIKQRLYLEALVLHGDKIQSERTDIINKFKAA 357

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKED 353
              L++A+D+A+RGLDIP++  V N+D+P   + YIHRIGRTGRAG   G A++L+   +
Sbjct: 358 K-NLLIATDVASRGLDIPEIKTVINYDLPQDTDTYIHRIGRTGRAGATDGTAYSLILMSE 416

Query: 354 IKHIDAIEKLIE 365
            K    + K++E
Sbjct: 417 SKFASDMLKVME 428


>gi|66551115|ref|XP_623285.1| PREDICTED: eukaryotic initiation factor 4A-like isoform 2 [Apis
           mellifera]
          Length = 423

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 129/380 (33%), Positives = 214/380 (56%), Gaps = 11/380 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L  +++  +   G+ KP+ IQ + I   ++ HDV   AQ+GTGKTA+F    ++
Sbjct: 51  NFDEMNLKEELLRGIYAYGFEKPSAIQQRAILPCIRGHDVIAQAQSGTGKTATF---SIS 107

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    ++  + LIL PTRELA Q+       G   +      IGG       +KL++
Sbjct: 108 ILQQIDTTIKECQALILAPTRELAQQIQKVVIALGDFMHAECHACIGGTNVREDMRKLDQ 167

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D  +R  L  ++I++ V+DEAD ML  GF   I ++  L+P   Q +
Sbjct: 168 GVHIVVGTPGRVYDMISRRALRASSIKLFVLDEADEMLSRGFKDQIHDVFKLLPHEVQVI 227

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQL 238
           L SATM  ++  VS+ F++NP RI V     T E I+  F+    +   +   C L   L
Sbjct: 228 LLSATMPSDVLDVSKCFMRNPIRILVKKEELTLEGIKQFFIYVEREEWKFETLCDLYDTL 287

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                ++   +IFCN ++ V  L  S+  + F+V A+HG+++Q+ R  I+  F+ G+ ++
Sbjct: 288 -----SITQAVIFCNTRRKVDWLTESMRTRDFTVSAMHGDMEQKERDLIMRQFRTGSSRV 342

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A  LV  +D + + 
Sbjct: 343 LITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINLVTDDDKRTLK 402

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            IE+     ++ +  +++ L
Sbjct: 403 DIEQFYNTSIEEMPMNVADL 422


>gi|222149119|ref|YP_002550076.1| cold-shock dead-box protein A [Agrobacterium vitis S4]
 gi|221736104|gb|ACM37067.1| cold-shock dead-box protein A [Agrobacterium vitis S4]
          Length = 673

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 123/346 (35%), Positives = 188/346 (54%), Gaps = 6/346 (1%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL---PMLTIL 63
           G+ P +  A+   GY   TP+Q   I   L+  D    AQTG+GKT +F L   P L   
Sbjct: 6   GIVPAIAEALRKRGYATLTPVQQAMIDTDLEGRDALVSAQTGSGKTVAFGLALAPTLLGS 65

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
           E    R   P  L + PTRELA QV    E   +N     A  +GG+    + + LERGA
Sbjct: 66  ENRFGRAVKPLALCIAPTRELALQVQRELEWLYENTGAIFATCVGGMDIRNERRALERGA 125

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            +++ TPGR+ DH  R  L ++ +  +V+DEAD MLD+GF   ++ I    P  R+TL+F
Sbjct: 126 HIIVGTPGRLRDHITRRALDLSGLRAVVMDEADEMLDLGFREDLEFILKESPDERRTLMF 185

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT+   +  ++ ++ ++ KRIE  +       IE+  + T     K+ A++  L   + 
Sbjct: 186 SATVPRSIADLARSYQRDAKRIETVSEQKQHIDIEYRAMLTVPA-DKENAIINALRFYE- 243

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +N I+FC+ + NV +L   L  +GFSV A+ G + Q  R   L   ++G  ++ VA+D
Sbjct: 244 -ARNAIVFCSTRANVNHLTARLHNRGFSVVALSGELSQSERTHALQAMRDGRARVCVATD 302

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +AARG+D+P +  V + D+P  +E  +HR GRTGRAG  G +  +V
Sbjct: 303 VAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGNKGVSALIV 348


>gi|294630456|ref|ZP_06709016.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
 gi|292833789|gb|EFF92138.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
          Length = 514

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 119/352 (33%), Positives = 184/352 (52%), Gaps = 9/352 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L L  +++ A+   G  +P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 77  FAELDLPARLLTALEREGVTEPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 136

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y +   L  A ++GG+    Q   L  G
Sbjct: 137 TAGRRAEPRQPLALVLVPTRELAQQVTDALTPYARALGLRAATVVGGMSIGRQAGALRGG 196

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A++++ TPGR+ D  +RG   ++ + + V+DEAD+M DMGF+P +  +   V    Q LL
Sbjct: 197 AELVVATPGRLKDLIDRGDCRLDEVAVTVLDEADQMADMGFMPQVTALLDQVRPDGQRLL 256

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  +    T+EH  +  +     +         ++
Sbjct: 257 FSATLDRNIDLLVRRYLSDPVVHSVDPSAGAVTTMEHHVLHVHDTDKHRTT-------TE 309

Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++G  I+F + K  V  L   L   G     +HG   Q  R + L+ FK G + ++V
Sbjct: 310 IAARDGRTIMFLDTKHAVDRLTKHLLNSGVRAAGLHGGKSQPQRNRTLTQFKTGQVTVLV 369

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           A+++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV  +
Sbjct: 370 ATNVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPD 421


>gi|258543003|ref|YP_003188436.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634081|dbj|BAI00057.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637141|dbj|BAI03110.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640193|dbj|BAI06155.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643250|dbj|BAI09205.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646305|dbj|BAI12253.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649358|dbj|BAI15299.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652344|dbj|BAI18278.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655402|dbj|BAI21329.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-12]
          Length = 400

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 131/369 (35%), Positives = 186/369 (50%), Gaps = 17/369 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL P +      AG   PTP+Q   IP +L   DV   A TGTGKTA++ LP+   
Sbjct: 5   FHDLGLDPALCAYAQQAGMAAPTPVQQAAIPAILDGRDVLVRAPTGTGKTAAYALPLSQK 64

Query: 63  LEKGRARVRMPR-TLILEPTRELAAQVADNF-------EKYGKNYNLTVALLIGGIPFEA 114
           L K R     PR  L+L PTREL  QV   F       +K  K   +T+  L GG     
Sbjct: 65  LLKSRK----PRFVLVLVPTRELVLQVEKVFRTCLGESKKGQKQTPVTLVPLFGGSDRAE 120

Query: 115 QNKKLER--GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           Q   L +  G  +LI TPGR+LD  +     ++    LV+DE DR+    F    + + S
Sbjct: 121 QEHFLAQATGRRILIATPGRLLDFVSNRICDLSECGYLVLDEGDRLFSPEFQEDTETLLS 180

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +P  RQTL+ SAT  + L+    N L  P  I +         I     A +   ++K 
Sbjct: 181 YLPSMRQTLVLSATQPESLKSTLLNLLHKPVEISIEQAPQKRGPIRQA--ALFLDPTQKP 238

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             +++       M++ I+F   K     L   L+K   +   +HG+I Q  R   +++F+
Sbjct: 239 GFIKEFFSRAPKMRS-IVFVRTKAEADQLAALLKKARLAAAPLHGDIAQDKRTSTVASFE 297

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G + ++VA+D+AARGLD+P V  V N+DVP++ E Y+HRIGRTGR G  G A TL   +
Sbjct: 298 SGRLFILVATDVAARGLDVPSVKQVINYDVPDQPETYLHRIGRTGRGGEKGSALTLCTMD 357

Query: 353 DIKHIDAIE 361
           D + +  IE
Sbjct: 358 DRQSLRQIE 366


>gi|116256765|sp|Q9FZ92|RH44_ARATH RecName: Full=Putative DEAD-box ATP-dependent RNA helicase 44
          Length = 622

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 138/401 (34%), Positives = 209/401 (52%), Gaps = 41/401 (10%)

Query: 30  KTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK-----GRARVRMPRTLILEPTREL 84
           +TIPL L++ DV GI+ TG+GKTA+FVLPML  + +        +   P  L++ PTREL
Sbjct: 239 ETIPLGLEQRDVIGISATGSGKTAAFVLPMLAYISRLPPMREENQTEGPYALVMVPTREL 298

Query: 85  AAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLM 144
           A Q+ +   K+ +        + G    E Q  KL +G +++I TPGR+LD   R  +++
Sbjct: 299 AHQIEEETVKFSRYLGFKAVSITGWESIEKQALKLSQGCEIVIATPGRLLDCLERRYVVL 358

Query: 145 NNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-----------------RQTLLFSATM 187
           N    LV+DEADRM+DM F P +  +  ++P +                 R T +FSATM
Sbjct: 359 NQCNYLVLDEADRMIDMDFEPQVSEVLDVMPCSNLKPEKEDEELEEKKIYRTTYMFSATM 418

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
              +++++  FL+NP    V T   T + I    + T  + S K + L++L+      K 
Sbjct: 419 LLSVERLARKFLRNPV---VVTIGETTKFITQQVIMT--KESDKFSRLKKLIDDLGDDKT 473

Query: 248 GIIFCNQKKNVVNLCHSLEKQG-FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
            I+F N +  V  +  +LEK G   V  +H    Q  R   L  FK+    ++V +D+  
Sbjct: 474 AIVFVNTRNKVDYIVKNLEKVGRCRVTTLHAGKSQEQRDYSLEEFKKKRFNVLVTTDVLG 533

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI D+  V N+D+PN  + Y HRIGRTGRAG+ G A T +  ED    D    L +K
Sbjct: 534 RGLDILDLAQVINYDMPNTMDLYTHRIGRTGRAGKTGVATTFLTLED---KDVFYGLKQK 590

Query: 367 KVDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKSTGF 406
               LN + +SL PP    ++A+H  ++ K    P + + F
Sbjct: 591 ----LN-ECNSLVPP----ELARHEASKFKPGTFPDRFSHF 622


>gi|91207081|sp|Q2UPY3|IF4A_ASPOR RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|83766239|dbj|BAE56382.1| unnamed protein product [Aspergillus oryzae]
          Length = 421

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 212/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P+++  V   G+ +P+ IQ + I  +++  DV   AQ+GTGKTA+F    ++ 
Sbjct: 50  FDAMELKPELLRGVYAYGFERPSAIQQRAIKPIIKGSDVIAQAQSGTGKTATF---SISA 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    V+  + LIL PTRELA Q+       G   N+T    IGG       K L  G
Sbjct: 107 LQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNITCHACIGGTAVREDMKALGEG 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +V++ TPGR+ D   R  L  ++++  ++DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 167 PEVVVGTPGRVHDMIQRRVLKTDHLKQFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 227 LSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 285

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A+
Sbjct: 286 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIAT 344

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 345 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 404

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 405 FYSTQIEEMPMNVADL 420


>gi|312115353|ref|YP_004012949.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100]
 gi|311220482|gb|ADP71850.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 570

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 120/368 (32%), Positives = 196/368 (53%), Gaps = 6/368 (1%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           G+ P    A+   GY   T +Q   +   +   D+   AQTG+GKT +F L M + L +G
Sbjct: 5   GVPPLFAEALAKQGYTTLTDVQRAVLEEDVGESDLLVSAQTGSGKTVAFGLAMASTLLRG 64

Query: 67  RARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
             R      P  +++ PTRELA QV    E         +A  +GG+    + + L  GA
Sbjct: 65  EDRFPANSEPLAVLVAPTRELALQVRLELEWLYAPAGARIASCVGGMDMRQERRSLAGGA 124

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            +++ TPGR+ DH  RG L M ++  +V+DEAD MLD+GF   ++ I    P  R+TL+F
Sbjct: 125 HIVVGTPGRLRDHITRGSLDMASVRAMVLDEADEMLDLGFREDLEFILKAAPPERRTLMF 184

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT+   ++ ++  F +N  RI  NT ++    I++  VA  A   ++ A++  L   + 
Sbjct: 185 SATVAKPIETLARRFQKNAIRISANTGATQHANIDYRAVAV-ASGERENAVINVLRFFEA 243

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
           +  +  +FC  ++ V +L   L  +GF V A+ G + Q  R + L   ++G  Q+ VA+D
Sbjct: 244 S--SAFVFCTTREGVKHLASRLGNRGFGVVALSGELSQTERTRGLQAMRDGRAQVCVATD 301

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +A+RG+D+P +  V + D+P   E  +HR GRTGRAGR G +  +      + +D + + 
Sbjct: 302 VASRGIDLPTLDLVIHADLPKDGEALLHRSGRTGRAGRSGVSVLITPHSKRRTVDKLLQA 361

Query: 364 IEKKVDWL 371
            + KV W+
Sbjct: 362 AKVKVSWM 369


>gi|313358754|gb|ADR51551.1| vasa-like protein variant 1 [Scylla paramamosain]
 gi|313358756|gb|ADR51552.1| vasa-like protein variant 2 [Scylla paramamosain]
 gi|313358758|gb|ADR51553.1| vasa-like protein variant 3 [Scylla paramamosain]
          Length = 632

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 124/361 (34%), Positives = 201/361 (55%), Gaps = 12/361 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F ++ L   ++  V  A + +PTPIQ  +IP+++ + D+   AQTG+GKTA+F+LPML  
Sbjct: 196 FQEMNLRNVLLENVSKAEFPRPTPIQKYSIPILMNQRDLMACAQTGSGKTAAFLLPMLHY 255

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           ILE          V  P  L+L PTRELA Q+     K+     +  + + GG+    Q 
Sbjct: 256 ILENDIESHSFEDVAQPVGLVLAPTRELAIQIFQEARKFSLQTVIKNSCIYGGVATNFQL 315

Query: 117 KKL-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS--- 172
           +++ E+G  ++I TPG++L     GK+ + +++ LV DEADRMLD+GFI  ++ + +   
Sbjct: 316 RRMKEQGCHIIIATPGKLLFFLGMGKISLKSLKFLVFDEADRMLDLGFIDDMEKLVAHPD 375

Query: 173 LVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           + P   R T++FSAT  +E+Q+ +  FL N   +      +  + +    V   A++ K+
Sbjct: 376 MPPKGERLTMMFSATFPEEVQRCALRFLDNYLFLVAGQVGAANKDVCQTIVQV-AKFEKR 434

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L + L   +D+ +  ++F   K+    +   L   GF    +HG   Q  R + LS F
Sbjct: 435 DKLAEYLRSFEDSQEKVLVFVEMKRQADFVGTYLSTNGFRSVTLHGGRYQEQREEALSAF 494

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +    +++VA+ +AARGLDI  VG+V N+D+P  A+ Y+HRIGRTGR G  G+A +    
Sbjct: 495 RSNQYRVLVATSVAARGLDIRGVGYVINYDLPKSADEYVHRIGRTGRVGNRGQAVSFYDP 554

Query: 352 E 352
           E
Sbjct: 555 E 555


>gi|325068862|ref|ZP_08127535.1| DEAD/DEAH box helicase domain protein [Actinomyces oris K20]
          Length = 470

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 110/301 (36%), Positives = 174/301 (57%), Gaps = 7/301 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ AV D G+V PT IQ + IP++L   DV G+AQTGTGKTA+F LP+L  
Sbjct: 176 FADLGLPGDLLKAVTDMGFVTPTAIQKEAIPVLLAGRDVVGVAQTGTGKTAAFGLPLLDA 235

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNF-EKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++   +R  + + L+L PTRELA Q A+   +   ++  L V  + GG P+  Q   L+ 
Sbjct: 236 VD---SRDNVVQALVLAPTRELALQSAEAITDMAARSRGLEVVAVYGGAPYGPQIGALKG 292

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++D  ++G L ++++   V+DEAD ML MGF   ++ I   +P  R+T 
Sbjct: 293 GAQVVVGTPGRVIDLIDKGALQLDDVRYFVLDEADEMLRMGFAEDVETIAESLPTDRRTA 352

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +Q V+   L  P ++EV+ P+ST  T+   +      +  K   + ++L  
Sbjct: 353 LFSATMPPAIQAVARQHLHEPVQVEVSRPASTVATVHQTYA--VVPFRHKIGAVSRVLAV 410

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D  +  I+F   K    ++   L  +G    AI G++ QR R +++   + GT+ ++VA
Sbjct: 411 TDA-EAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVLVA 469

Query: 302 S 302
           +
Sbjct: 470 T 470


>gi|169773163|ref|XP_001821050.1| ATP-dependent RNA helicase dbp4 [Aspergillus oryzae RIB40]
 gi|238491114|ref|XP_002376794.1| DEAD box  RNA helicase (Hca4), putative [Aspergillus flavus
           NRRL3357]
 gi|91206545|sp|Q2UHB7|DBP4_ASPOR RecName: Full=ATP-dependent RNA helicase dbp4
 gi|83768911|dbj|BAE59048.1| unnamed protein product [Aspergillus oryzae]
 gi|220697207|gb|EED53548.1| DEAD box RNA helicase (Hca4), putative [Aspergillus flavus
           NRRL3357]
          Length = 796

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 143/457 (31%), Positives = 243/457 (53%), Gaps = 32/457 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F+DL LS      +  + +   T IQ + I   L+  D+ G A+TG+GKT +F++P+L  
Sbjct: 47  FSDLPLSEPTASGLASSHFKTLTDIQSRAIGHALKGRDILGAAKTGSGKTLAFLIPVLEN 106

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  K  +       LIL PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L R
Sbjct: 107 LYRKQWSEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLIIGGKSLKEEQERLGR 166

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++  +  + N+++LV+DEADR+LDMGF   +  I   +P  RQT
Sbjct: 167 -MNILVCTPGRMLQHLDQTAMFDVFNLQMLVLDEADRILDMGFQKTVDAIVGHLPKERQT 225

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT T ++  ++   LQ+P+ + V+  +S+A   T++  +V T    S+K  +L   
Sbjct: 226 LLFSATQTKKVSDLARLSLQDPEYVAVHETASSATPSTLQQHYVVT--PLSQKLDVLWSF 283

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++S    K  I+F +  K V  +  S    + G  +  +HG   Q  R+ I + F +   
Sbjct: 284 IRSNLKAKT-IVFLSSGKQVRFVYESFRHLQPGIPLMHLHGRQKQGGRLDITAKFSQAKH 342

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++ ++D+ ARGLD P V  V   D P  A+ YIHR+GRT R  R G+A   +   +   
Sbjct: 343 AVLFSTDITARGLDFPAVDWVIQMDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEESG 402

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  +++L +KKV            P+E+I+I  +      + +  ++  F   +  Y  Q
Sbjct: 403 M--LKRLEQKKV------------PIERINIKANKQQSIRDQL--QNMCFKDPELKYLGQ 446

Query: 417 KSHIP------LKESEKISKLQQDIQENDADSLGFRG 447
           K+ I       +++ +++ KL++   E+ A SLG  G
Sbjct: 447 KAFISYVKSVYVQKDKEVFKLKELKLEDFASSLGLPG 483


>gi|256074321|ref|XP_002573474.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238658654|emb|CAZ29706.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 829

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 118/356 (33%), Positives = 193/356 (54%), Gaps = 5/356 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS      ++  GY  PTPIQ K IP++L   DV  +A+TG+GKTA+F++P+   
Sbjct: 32  FQSMGLSVATFNGIIKKGYKIPTPIQRKAIPIILSGRDVVSMARTGSGKTAAFLIPLF-- 89

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            EK        PR LI+ PTRELA Q  +  ++ GK   L   +++GG   E Q   L +
Sbjct: 90  -EKFPCHSPAGPRALIMSPTRELAIQTLNFTKELGKFTPLKATIILGGDKMEEQFAALHK 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D++I TPGR L       L + +IE +V DE DR+ ++GF   +      +P +RQTL
Sbjct: 149 SPDIIIATPGRFLHVLMEMNLSLKSIEYVVFDEGDRLFELGFAEQLSETLKRLPRSRQTL 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+   L + +   L +P  + ++  S  ++ ++   +    +  K   L+  L + 
Sbjct: 209 IFSATLPKNLVEFARAGLVDPILLRLDLHSKLSQDLKLAHITCLPE-EKNVILVHLLGKV 267

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  ++F   K +V +    L   GF    IH  +D  +R   L  F+  T ++++ 
Sbjct: 268 IHKDEQAVVFFATKHHVESFQMLLTDLGFGCTCIHSGLDPSARNLALKKFRSRTARVLLV 327

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +D+AARG+DIP + +V NF  P + + ++HR+GR  RAGR G A++LV  E++ ++
Sbjct: 328 TDVAARGVDIPHLDNVINFHFPAQPKLFLHRVGRVARAGRRGVAYSLVDPEELPYL 383


>gi|193890969|gb|ACF28638.1| translation initiation factor 4A [Amphidinium carterae]
          Length = 331

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 121/336 (36%), Positives = 183/336 (54%), Gaps = 5/336 (1%)

Query: 28  QIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQ 87
           Q + I  V+   D  G AQ+GTGKTA+FV+  L   Z+   R+R  +TLIL PTRELA Q
Sbjct: 1   QQRAIRPVIDGRDTIGQAQSGTGKTATFVIGSL---ZRVDFRLRECQTLILAPTRELADQ 57

Query: 88  VADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNI 147
                   G   N+     +GG  ++    +L  G  V++ TPGR+ D  N+G L ++++
Sbjct: 58  TNKVVLALGDYCNVQSHACVGGSNYKDSISRLREGQHVVVATPGRVYDMINKGYLKVDHL 117

Query: 148 EILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV 207
              + DEAD ML  GF   + +I   +P   Q  LFSATM  E+  ++  F+++P RI V
Sbjct: 118 LTFICDEADVMLSKGFKDQLYDIFKTLPSDVQVCLFSATMAPEVLDLTSKFMRDPVRILV 177

Query: 208 NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
                T E I   +VA   +  K   L    L    T+   II+ N ++ V +L H L K
Sbjct: 178 KKDELTLEGIHQYYVAIEKEDWKLDTLCD--LYECVTISQCIIYSNYRRKVDSLAHELSK 235

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
           + F+V  IH ++DQ  R  ++  F+ G  ++++++DL ARG+D+  V  V N+D+P   E
Sbjct: 236 RDFAVSIIHADLDQEERNLVMKEFRNGATRVLISTDLLARGIDVQQVSLVINYDMPMDME 295

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           NY+HRIGR+GR GR G A   V   + + +  IE +
Sbjct: 296 NYLHRIGRSGRFGRKGVAINFVTNREGRTMKEIESI 331


>gi|307195490|gb|EFN77376.1| Probable ATP-dependent RNA helicase DDX49 [Harpegnathos saltator]
          Length = 444

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 137/380 (36%), Positives = 204/380 (53%), Gaps = 25/380 (6%)

Query: 23  KPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTR 82
           +PT IQ   IP +L   D  G A+TG+GKT +F LP+L  L +    +     L+L PTR
Sbjct: 3   QPTAIQQNCIPRILGGEDCIGCAKTGSGKTLAFALPILQKLCEDPYGIF---ALVLTPTR 59

Query: 83  ELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142
           ELA Q+AD F   GK  NL   +++GG+    Q  +L +   +++ TPGR+ DH +    
Sbjct: 60  ELAFQIADQFAAIGKAINLKKCVIVGGMDMMVQGLELSKRPHIVVATPGRLADHLDSCNT 119

Query: 143 L-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQN 201
             +  I+ LV+DEADR+L   F   ++ I + +P  +Q LLFSATMT        N L N
Sbjct: 120 FSLKRIKFLVLDEADRLLGGHFDKQLKTIFATLPEQKQVLLFSATMT--------NDLDN 171

Query: 202 PKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL-QQLLQSQ---------DTMKNG--I 249
            K +  N      E  +   +AT  +  ++  L  + +L S           T KNG  +
Sbjct: 172 VKSVASNKVFIWEEK-DDAGIATVKELDQRYVLCPKDVLDSYLVEVIRTFCATNKNGSIM 230

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           +F +  KN   L  +L   GF+  A+H  I Q+ R+  L+ FK   +Q+++A+D+AARGL
Sbjct: 231 VFTDTCKNCQLLSMALNDVGFTNVALHAMIKQKERLAALNKFKSNHVQILIATDVAARGL 290

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           DI +V  V N  +PN  + YIHR+GRT RAGR+G A +L+   D+K + AIE  I  K+ 
Sbjct: 291 DIHEVELVVNHVIPNVPKEYIHRVGRTARAGRNGMAVSLITPHDVKLLHAIEDAIGTKLT 350

Query: 370 WLNGDLSSLNPPLEKIDIAQ 389
               D   +   L +I +A+
Sbjct: 351 EYKVDDKEIVTILTQISVAK 370


>gi|294818017|ref|ZP_06776659.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|294322832|gb|EFG04967.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 475

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 119/347 (34%), Positives = 181/347 (52%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL  +++  +   G   P PIQ  T+P  L   D+ G A+TG+GKT +F L +L  
Sbjct: 45  FAELGLPVELMGTLTRLGVRDPFPIQAATLPSALAGRDILGRARTGSGKTLAFGLALLAR 104

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  + P  L+L PTRELA QV++    Y +   L  A ++GG+    Q   L  G
Sbjct: 105 TAGLRAEAKRPLALVLVPTRELAQQVSEALAPYAEALGLRTATVVGGLAINRQVAALRAG 164

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D   R    ++ + I V+DEAD+M DMGF+P +      +P   Q LL
Sbjct: 165 AEVVVATPGRLADLVARRDCHLDRVRIAVLDEADQMCDMGFLPQVSEALDRMPPGGQRLL 224

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +  ++L  P    V+    +  T+EH  +  +   + K A   ++    
Sbjct: 225 FSATLDRNVDHLVRHYLTEPVPATVDRAEGSVATLEHHVLNVHP--ADKYATATEIAARD 282

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   ++F + K  V      L   G    A+H    Q  R   L+ FK+G + ++VA+
Sbjct: 283 GRV---LMFLDTKHGVDQFTRHLRSSGIQAGALHSGKSQPQRTHTLARFKDGGLTVLVAT 339

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARG+ I  +  V N D P  A++Y+HR GRT RAG  G   TLV
Sbjct: 340 NVAARGIHIEHLDLVVNVDPPADAKDYLHRGGRTARAGESGSVVTLV 386


>gi|183984792|ref|YP_001853083.1| ATP-dependent RNA helicase, RhlE1 [Mycobacterium marinum M]
 gi|183178118|gb|ACC43228.1| ATP-dependent RNA helicase, RhlE1 [Mycobacterium marinum M]
          Length = 524

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 191/361 (52%), Gaps = 6/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   ++  +   G   P PIQI+T+P  L   DV G  +TG+GKT +F LPM++ 
Sbjct: 78  FADLGVGESLIEVLAARGISHPFPIQIETLPDTLGGRDVLGRGKTGSGKTLAFSLPMVSR 137

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     R   P  L+L PTRELA+Q+    +       L V  + GG+P   Q   L  G
Sbjct: 138 LAGRPRRPARPTGLVLAPTRELASQITATLQPLAAVNGLRVTTIFGGVPQGRQVTALNSG 197

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++  PGR+ D   +  + +++IEI VIDEAD M D+GF+P +  I +  P   Q LL
Sbjct: 198 VDIVVACPGRLEDLMKQRLISLDSIEITVIDEADHMADLGFLPGVTRILAATPSGGQRLL 257

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT+ + + K+   FL +     V++  S   + + H F  + A   K   L+ +L  +
Sbjct: 258 FSATLDNGVDKLVNRFLHDAVLHSVDSSDSPVPQMVHHVFHVSGAAAKKD--LVHRL--A 313

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T +  I+F   K     L   L + G     +HGN+ Q +R + L+ F +G  +++VA
Sbjct: 314 SGTGRR-ILFMRTKHQARKLAKQLTESGVPAVDLHGNLSQPARDRNLAAFSKGEARVLVA 372

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ +  +  V + D P   + Y+HR GRT RAG  G   T+V  E  K   A+ 
Sbjct: 373 TDIAARGVHVDGIELVVHIDPPAEHKAYLHRSGRTARAGNAGDVVTVVLPEQRKDTHALM 432

Query: 362 K 362
           +
Sbjct: 433 R 433


>gi|67423413|dbj|BAD99524.1| VASA RNA helicase [Moina macrocopa]
          Length = 843

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 128/356 (35%), Positives = 194/356 (54%), Gaps = 13/356 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL   V+  +  +GY KPTP+Q   I +VL R D+   A TG+GKTA+F++P++ I
Sbjct: 411 FETAGLRDLVLQNIKASGYTKPTPVQKGAIAVVLARRDLIASAVTGSGKTAAFLVPVVNI 470

Query: 63  L-EK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           L EK         V+ P  +I+ PTRELA Q+     K+  N  L   ++ GG     Q 
Sbjct: 471 LLEKQVQGAPSGEVQKPEVVIISPTRELAIQIHREARKFSHNSVLKSVIVYGGTQVSHQK 530

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF---IPYIQNITSL 173
             L  G ++L+ TPGR+ D  ++G +  +N++  ++DEADRMLDMGF   I +I    ++
Sbjct: 531 SSLMNGCNILVGTPGRLKDFVDKGFIDFSNVQFFILDEADRMLDMGFGSDIEFIAQHPTM 590

Query: 174 VPFTRQ-TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            P  R+ TL+FSAT  D++QK++  +L +   + V T +      + C      Q   K 
Sbjct: 591 TPVGRRVTLMFSATFPDDVQKIAGKYLHD--YVFVTTGNIGGMNPDVCQEFHEVQRQDKR 648

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L ++L+     +  I+F   KK    +   L    F   +IHG+  Q  R + L  FK
Sbjct: 649 NKLVEILRDLGNSRV-IVFVESKKTADFIAAFLANTQFQATSIHGDRLQSQREQALREFK 707

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            G   ++VA+++AARGLDI  V +V N+D+P   E Y+HRIGRTGR G  G++ + 
Sbjct: 708 SGQRNILVATNVAARGLDIAGVEYVINYDLPADIEEYVHRIGRTGRVGNAGRSISF 763


>gi|255719254|ref|XP_002555907.1| KLTH0H00638p [Lachancea thermotolerans]
 gi|238941873|emb|CAR30045.1| KLTH0H00638p [Lachancea thermotolerans]
          Length = 433

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 138/406 (33%), Positives = 215/406 (52%), Gaps = 26/406 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA LG+S  +V A+      +PT IQ   IP +LQ  D  G A+TG+GKT +F  PMLT
Sbjct: 4   EFATLGISKWLVEALQAMKITQPTAIQKACIPQILQGKDCIGGAKTGSGKTIAFGAPMLT 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +  + +     ++L PTRELA Q+A+ F   G + N+ VAL++GG     Q   L+R
Sbjct: 64  KWSEDPSGMF---GVVLTPTRELAMQIAEQFTALGSSMNIRVALVVGGESIVDQAINLQR 120

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIE---ILVIDEADRMLDMGFIPYIQNITSLVP-- 175
               ++ TPGR+  H  N G+  +  ++    LV+DEAD +L   F  ++    S++P  
Sbjct: 121 KPHFIVATPGRMAHHIMNSGEDTIGGLKRAKFLVLDEADILLTDTFSEHLATCISILPPK 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE-------TIEHCFVATY--- 225
             RQTLLF+AT+TD+++      LQN    E   P  + E        I      TY   
Sbjct: 181 EKRQTLLFTATVTDQVKA-----LQNAPAAEGKPPLFSYEVESMDKVAIPSTLKTTYLLV 235

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            +  K+  L Q L  +     + IIF N+      L  +L++    V ++H  + Q+ R 
Sbjct: 236 PEQVKEAYLYQILTNATYNESSAIIFVNRTVTAEILRRTLKQLDVRVASLHSQMPQQERT 295

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L  F+    ++++A+D+A+RGLDIP V  V N+D+ +  + +IHR GRT RAGR G++
Sbjct: 296 NSLHRFRANAARVLIATDVASRGLDIPTVQLVINYDISSNPDTFIHRAGRTARAGRSGES 355

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNG--DLSSLNPPLEKIDIAQ 389
              VA  D+  I+AIE+ I KK++      D + +   L K+ +A+
Sbjct: 356 ICFVAPRDVSRIEAIEERINKKMEEFKDVHDTAVIRKALNKVTVAK 401


>gi|332520339|ref|ZP_08396801.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332043692|gb|EGI79887.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 373

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 128/375 (34%), Positives = 210/375 (56%), Gaps = 13/375 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F DLG+    + ++ +     PT IQ + IP++++ + D  G+AQTGTGKTA++ LP   
Sbjct: 4   FRDLGIHKNYIKSLKELDIKTPTEIQEQAIPILIKSKVDFVGLAQTGTGKTAAYGLP--- 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN---LTVALLIGGIPFEAQNKK 118
           +L K  A  +  + LI+ PTREL  Q+     K+ K YN   + V  + GG   + Q   
Sbjct: 61  VLHKVDANKKSVQGLIIAPTRELVQQIKKQLFKFTK-YNDKKIFVEGVYGGEKIDIQISN 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT-SLVPFT 177
           L+R   +++ TPGR++D  ++  + + +I  LV+DEAD ML MGF   +  I  +     
Sbjct: 120 LKRPTHIIVATPGRLVDLLDKNIIDLKHINTLVLDEADEMLSMGFKKDLNIILDATTKSA 179

Query: 178 RQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           R T LFSATM  +L+ +   ++ ++  R+EVN  S     I H FV T      K   + 
Sbjct: 180 RNTWLFSATMPTDLKAIVNRYISKDAARVEVNRNSIVNANISHHFVQT--PIVDKAHTIM 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL  +   + GIIFC  K     L   L+K+GF+V A+ G++ Q+ R K++  FK   +
Sbjct: 238 RLLDDRAD-ERGIIFCRTKAGTQALKQQLQKEGFNVDALEGDMTQKERDKVMRAFKNTNL 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q+++++D++ARG+D+ ++  + +  +P   E Y HR GRT RAG+ G++  LV   ++K 
Sbjct: 297 QILISTDVSARGIDVNNLAFIIHHQLPEHIEYYTHRSGRTARAGKKGESIALVLPSELKK 356

Query: 357 IDAIEKLIEKKVDWL 371
           +  +EK +  K+  L
Sbjct: 357 VAELEKALGIKIKEL 371


>gi|15218574|ref|NP_177417.1| eukaryotic translation initiation factor 4A, putative / eIF-4A,
           putative [Arabidopsis thaliana]
 gi|75333652|sp|Q9CAI7|IF4A3_ARATH RecName: Full=Eukaryotic initiation factor 4A-3; Short=eIF-4A-3;
           AltName: Full=ATP-dependent RNA helicase eIF4A-3;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 23
 gi|12323781|gb|AAG51861.1|AC010926_24 putative Eukaryotic initiation factor 4A; 30924-32477 [Arabidopsis
           thaliana]
 gi|16974629|gb|AAL31217.1| At1g72730/F28P22_8 [Arabidopsis thaliana]
 gi|21593752|gb|AAM65719.1| putative Eukaryotic initiation factor 4A [Arabidopsis thaliana]
 gi|22655476|gb|AAM98330.1| At1g72730/F28P22_8 [Arabidopsis thaliana]
 gi|332197244|gb|AEE35365.1| translation initiation factor 4A-3 [Arabidopsis thaliana]
          Length = 414

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 197/379 (51%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 43  FDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    + +    L+L PTRELA Q+       G    +     +GG       + L+ G
Sbjct: 103 LDISLVQCQ---ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSG 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 160 VHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGV 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 220 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLA 279

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 280 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   +  ED + +  
Sbjct: 335 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMAD 394

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     V+ L  +++ L
Sbjct: 395 IQRFYNVVVEELPSNVADL 413


>gi|189203493|ref|XP_001938082.1| ATP-dependent RNA helicase eIF4A [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|330914916|ref|XP_003296835.1| hypothetical protein PTT_07032 [Pyrenophora teres f. teres 0-1]
 gi|187985181|gb|EDU50669.1| ATP-dependent RNA helicase eIF4A [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|311330840|gb|EFQ95065.1| hypothetical protein PTT_07032 [Pyrenophora teres f. teres 0-1]
          Length = 396

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 214/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L  +++  V   G+ +P+ IQ + I  V++ +DV   AQ+GTGKTA+F    ++ 
Sbjct: 25  FDNMNLKAELLRGVYAYGFERPSAIQQRAIMPVIKGNDVIAQAQSGTGKTATF---SIST 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K  + V+  + LIL PTRELA Q+       G   ++     IGG       K L+ G
Sbjct: 82  LQKIDSNVKACQALILAPTRELAQQIQKVVVAIGDFMDIQCHACIGGTSVRDDMKALQDG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 142 PQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 202 LSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKE-DWKLDTLSDLYETV 260

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A+
Sbjct: 261 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDVIMKEFRSGSSRVLIAT 319

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 320 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 379

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 380 FYSTQIEEMPMNVADL 395


>gi|60115443|dbj|BAD90012.1| DEAD box RNA helicase [Tubifex tubifex]
          Length = 396

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 116/311 (37%), Positives = 186/311 (59%), Gaps = 13/311 (4%)

Query: 45  AQTGTGKTASFVLPMLTIL-----EKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
           AQTG+GKTA+F+LP+LT +     E G+ + V+ P+ +I+ PTREL  Q+ +   K+  N
Sbjct: 4   AQTGSGKTAAFLLPVLTGMLRNGVEGGQFSVVQEPQAIIVGPTRELVTQIYNEARKFAHN 63

Query: 99  YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             +   ++ GG+    Q +++ +GA +++ T GR+LD   +G L +  ++  ++DEADRM
Sbjct: 64  TMVRPVVVYGGVTTGYQAREVSKGAHLVVGTAGRLLDFIRKGYLSLAKVKYFILDEADRM 123

Query: 159 LDMGFIPYIQNITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA 214
           LDMGF+P +  + + +       RQTL+FSAT  +E+Q++++  L +   + V       
Sbjct: 124 LDMGFLPNMMALANELGMPAKTERQTLMFSATFPEEVQQLAKELLNDYIFVTVGRVGGAN 183

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
             IE   V    Q++K+  L+  +L SQ   +  ++F  QK+    +   L +  F   +
Sbjct: 184 TDIEQ-HVLQVDQFNKREKLVS-ILNSQGQQRT-LVFVEQKRQADFIASYLSQSEFPTTS 240

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           IHG+ +QR R + L +FK GT  ++VA+ +AARGLDIP V HV NFD+P   + Y+HRIG
Sbjct: 241 IHGDREQREREEALRDFKNGTAPILVATSVAARGLDIPGVNHVINFDMPQSIDEYVHRIG 300

Query: 335 RTGRAGRHGKA 345
           RTGR G  G+A
Sbjct: 301 RTGRCGNLGRA 311


>gi|22135801|gb|AAM91087.1| At5g26740 [Arabidopsis thaliana]
          Length = 748

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 121/346 (34%), Positives = 196/346 (56%), Gaps = 14/346 (4%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--EKG-----RARVRMPRTLIL 78
           PIQ   +   LQ  D+   A+TGTGKT +F +P++  L  E G     R   R+P+ L+L
Sbjct: 127 PIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVL 186

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QV    ++      L+   + GG+ +  Q   L RG DV++ TPGRI+D   
Sbjct: 187 APTRELAKQVEKEIKESAPY--LSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIE 244

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
              L +  +E LV+DEAD+ML +GF   +++I   +P  RQ++LFSATM   ++K++  +
Sbjct: 245 GRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKY 304

Query: 199 LQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
           L NP  I++  +     AE I+   +AT +  + K  +L  L+         I+F   K+
Sbjct: 305 LDNPLNIDLVGDQDEKLAEGIKLYAIATTS--TSKRTILSDLITVYAKGGKNIVFTQTKR 362

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
           +   +  +L     +  A+HG+I Q  R + L+ F++G   ++VA+D+A+RGLDIP+V  
Sbjct: 363 DADEVSLALSNS-IATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDL 421

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           V ++++PN  E ++HR GRTGRAG+ G A  +      + + ++E+
Sbjct: 422 VIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLER 467


>gi|184154996|ref|YP_001843336.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
 gi|183226340|dbj|BAG26856.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
          Length = 460

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 210/379 (55%), Gaps = 14/379 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L+  +  A+ D  + +PT +Q + IPL+L    V G ++TG+GKT +F+LP+ + 
Sbjct: 5   FADLHLADFLTPALKDLHFERPTAVQARVIPLILNGKSVVGQSRTGSGKTHAFLLPIFSQ 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKL- 119
           L      V+    +I  P+RELA Q+ +  ++  +     LT+   +GG   E Q ++L 
Sbjct: 65  LAPNNQTVQ---AVITTPSRELAYQIYNAAKQLNRFATTPLTIHNYVGGTDKEHQVEQLN 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R   ++I TPGRILD  N   L ++     VIDEAD  LDMGF+  +  I +  P   Q
Sbjct: 122 RRQPQLVIGTPGRILDLINSQALDIHTASQFVIDEADMTLDMGFLETVDQIAARFPEKLQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++FSAT+   L+   + +L+NP   E+ T +     +E+  ++T  +   K  L+ +LL
Sbjct: 182 MMVFSATIPQGLRPFLKKYLENPVIEEIPTETVINPNVENWLMSTKGR--DKNDLVYRLL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     ++F N +     L + L+++G  V  IHG ++ R+R + +   ++   Q +
Sbjct: 240 TLGDPYL-ALVFANTRDRATELANYLQERGLKVALIHGGLEPRARKRTMRQIRDMDYQYI 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           VA+DLAARG+D+  V  V N D+P+  E +IHR+GRTGRA   G A TL A  ED+    
Sbjct: 299 VATDLAARGIDLEGVSLVLNDDIPSDLEYFIHRVGRTGRANMAGTAITLYAPAEDV---- 354

Query: 359 AIEKLIEKKVDWLNGDLSS 377
            IEKL E+ + ++  DL +
Sbjct: 355 LIEKLEERGITFIPKDLKN 373


>gi|295657321|ref|XP_002789230.1| ATP-dependent RNA helicase DHH1 [Paracoccidioides brasiliensis
           Pb01]
 gi|226283998|gb|EEH39564.1| ATP-dependent RNA helicase DHH1 [Paracoccidioides brasiliensis
           Pb01]
          Length = 515

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 192/362 (53%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E+   +    + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 107 ---ERTNPKNSKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLN 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 164 EAVHIIVGTPGRILDLASKGVADLSECSTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQI 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  ++NP  I +     T   I   +   + +  +K   L  L  
Sbjct: 224 MLFSATFPLIVKSFKDKHMRNPYEINL-MDELTLRGITQYYA--FVEEKQKVHCLNTLF- 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQHNRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRYNLYKI 399

Query: 361 EK 362
           E+
Sbjct: 400 EQ 401


>gi|3775987|emb|CAA09196.1| RNA helicase [Arabidopsis thaliana]
          Length = 748

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 121/346 (34%), Positives = 196/346 (56%), Gaps = 14/346 (4%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--EKG-----RARVRMPRTLIL 78
           PIQ   +   LQ  D+   A+TGTGKT +F +P++  L  E G     R   R+P+ L+L
Sbjct: 127 PIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVL 186

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QV    ++      L+   + GG+ +  Q   L RG DV++ TPGRI+D   
Sbjct: 187 APTRELAKQVEKEIKESAPY--LSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIE 244

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
              L +  +E LV+DEAD+ML +GF   +++I   +P  RQ++LFSATM   ++K++  +
Sbjct: 245 GRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKY 304

Query: 199 LQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
           L NP  I++  +     AE I+   +AT +  + K  +L  L+         I+F   K+
Sbjct: 305 LDNPLNIDLVGDQDEKLAEGIKLYAIATTS--TSKRTILSDLITVYAKGGKTIVFTQTKR 362

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
           +   +  +L     +  A+HG+I Q  R + L+ F++G   ++VA+D+A+RGLDIP+V  
Sbjct: 363 DADEVSLALSNS-IATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDL 421

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           V ++++PN  E ++HR GRTGRAG+ G A  +      + + ++E+
Sbjct: 422 VIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLER 467


>gi|307194191|gb|EFN76608.1| Eukaryotic initiation factor 4A-II [Harpegnathos saltator]
          Length = 423

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 133/379 (35%), Positives = 215/379 (56%), Gaps = 9/379 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F    ++
Sbjct: 51  NFDEMNLKEELLRGIYAYGFEKPSAIQQRAILPCIRGLDVIAQAQSGTGKTATF---SIS 107

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    ++  + LIL PTRELA Q+       G   +      IGG       +KL++
Sbjct: 108 ILQQIDTSIKECQALILAPTRELAQQIQKVVIALGDFMHAECHACIGGTNVREDMRKLDQ 167

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  +R  L  ++I++ V+DEAD ML  GF   I ++  L+P   Q +
Sbjct: 168 GVHVVVGTPGRVYDMISRRALRASSIKLFVLDEADEMLSRGFKDQIHDVFKLLPNEVQVI 227

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++  VS+ F++NP RI V     T E I+  FV    +  K    L+ L   
Sbjct: 228 LLSATMPSDVLDVSKCFMRNPIRILVKKEELTLEGIKQFFVYVEREDWK----LETLCDL 283

Query: 242 QDTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            DT+     +IFCN ++ V  L  S+ K+ F+V A+HG+++Q+ R  I+  F+ G+ +++
Sbjct: 284 YDTLSITQAVIFCNTRRKVDWLTESMHKRDFTVSAMHGDMEQKERDLIMRQFRTGSSRVL 343

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V ++D + +  
Sbjct: 344 ITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTEDDKRTLKD 403

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+     +D +  +++ L
Sbjct: 404 IEQFYNTHIDEMPMNVADL 422


>gi|320590896|gb|EFX03337.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 530

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 194/362 (53%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F + GL   ++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFEEFGLKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVIPAL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK   +V   + LIL PTRELA Q +   +  GK+ N+ V +  GG        +L+
Sbjct: 107 ---EKINPKVSKIQCLILVPTRELAMQTSQVCKSLGKHLNINVMVTTGGTGLRDDIVRLQ 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++    ++   + ++DEAD++L   F P I+ +    P  RQ 
Sbjct: 164 EAVHIVVGTPGRILDLASKNVADLSECPMFIMDEADKLLSAEFTPVIEQLLQFHPKDRQV 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++  S+  + +P  I +     T   I   +   + +  +K   L  L  
Sbjct: 224 MLFSATFPLSVKDFSDKNMVSPYEINL-MDELTLRGITQYYA--FVEERQKVHCLNTLF- 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q++R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMAQQARNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRLNLYNI 399

Query: 361 EK 362
           E+
Sbjct: 400 ER 401


>gi|50955595|ref|YP_062883.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50952077|gb|AAT89778.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 531

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 126/354 (35%), Positives = 183/354 (51%), Gaps = 8/354 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+   +V  +   G  +P PIQ  T+P  L   DV G  +TG+GKT +F LP+   
Sbjct: 6   FAELGVPAALVSVLAADGKAEPFPIQAGTLPDTLAGRDVLGRGKTGSGKTIAFSLPLAAR 65

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L   RA    R R PR L+L PTRELA Q+           +L    + GG+    Q   
Sbjct: 66  LGADRAGAASRGRRPRGLVLAPTRELATQIDATLAPLAAALDLRTTTIFGGVSQNRQVTA 125

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+++  PGR+ D   +G L ++ IEI V+DEAD M D+GF+P +  I    P   
Sbjct: 126 LRAGVDIVVACPGRLDDLMKQGILSLDAIEITVLDEADHMADLGFLPTVTRILDKTPAGG 185

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT+ + + K+ + FL++     V+  +S  E + H  V   A+   K  L+  L
Sbjct: 186 QRLLFSATLDNGVDKLVKRFLRDEVLHSVDEATSHVEAMTH-HVFEVAEAEAKKELVNAL 244

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q      I+F   K     L   L   G     +HGN+ Q +R + L+ F  G +++
Sbjct: 245 ASGQGRR---ILFTRTKHQAKRLAKQLTSAGVPAVDLHGNLSQGARDRNLAAFGSGDVRV 301

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +VA+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   T++  E
Sbjct: 302 LVATDVAARGVHVDDVELVVHVDPPAEHKAYLHRSGRTARAGSAGDVVTVMLPE 355


>gi|319400894|gb|EFV89113.1| DEAD/DEAH box helicase family protein [Staphylococcus epidermidis
           FRI909]
          Length = 448

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 132/384 (34%), Positives = 207/384 (53%), Gaps = 18/384 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV +  + KPT IQ + IP +L+  ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEHFNLDENLIEAVKNLNFEKPTEIQNRIIPRILKGTNLIGQSQTGTGKSHAFLLPLIQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQ---VADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +   ++ ++ P+ +++ PTRELA Q   VA +  K+ K   + V L IGG   E   ++ 
Sbjct: 66  I---KSDIQEPQAIVVAPTRELAQQLYQVAMHLVKFKKG--IKVKLFIGGTDLEKDKQRC 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++I TP RI D  + G L  +    L+IDEAD M+D+G I  + +I + +     
Sbjct: 121 SHQPQLIIGTPTRINDLAHSGYLHAHLASYLIIDEADLMIDLGLIEDVDHIAARLDDENA 180

Query: 180 TL-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            L +FSAT+   LQ     +L  P+ +EV+  +   E IE   + T     K  A + + 
Sbjct: 181 HLAVFSATIPKSLQPFLNKYLSQPEFVEVDGKAHNKENIEFYLIPT-----KGSAKVDKT 235

Query: 239 LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+  D +     IIFCN ++N   L  +L K+G  +  IHG +  R R + +   +    
Sbjct: 236 LELIDILNPYLCIIFCNSRENADELADTLNKEGIKIGMIHGGLTPRERKQQMKRIRNLDF 295

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q ++ASDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +
Sbjct: 296 QFVIASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEESN 355

Query: 357 IDAIEK--LIEKKVDWLNGDLSSL 378
           I  IE      K VD  NG+L  +
Sbjct: 356 ITLIEDRGYKFKNVDIKNGELKPI 379


>gi|299115404|emb|CBN74235.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 584

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 131/363 (36%), Positives = 187/363 (51%), Gaps = 11/363 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA  G+  +V+  V   G+ KPT IQ    P++    DV GIA+TG+GKT  F LP ++
Sbjct: 161 DFASSGMPAEVMKYVTLRGWDKPTLIQAHCWPVLNAGRDVIGIAETGSGKTLGFSLPAMS 220

Query: 62  IL---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +    K   +   P  L+L PTRELA Q A+   + G +  +    + GG+P   Q   
Sbjct: 221 KIFKNMKAGKKSEGPYMLVLAPTRELALQSAEVIAEAGGHCGIKSVCVYGGVPKRDQKIA 280

Query: 119 LERGADVLI-----CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           L  G           TPGR+ D    G   ++ +  LV+DEADRMLD+GF   +++I   
Sbjct: 281 LGGGRGGGCVQVVVATPGRLKDLVGEGACDLSKVTSLVLDEADRMLDLGFEQDVRDIIGY 340

Query: 174 V--PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
              P  RQT +FSAT    ++ ++  FL +P ++ V     TA       V    +  + 
Sbjct: 341 CAGPSKRQTAMFSATWPKSIRDLAAEFLADPVKVTVGADDLTANYRVEQHVEVVEERERD 400

Query: 232 CALLQQLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             LL+ L     + KN + +F   K+    L   L++  F   A+HG+  Q  R + L  
Sbjct: 401 GKLLRLLATCHKSRKNRVLVFALYKREAARLEQFLQRNNFDAVAVHGDKGQADRERALGQ 460

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK     LMVA+D+AARGLDIPDV +V N+  P   E+YIHRIGRTGRAG+ G + T   
Sbjct: 461 FKSKERPLMVATDVAARGLDIPDVEYVINYSFPLTIEDYIHRIGRTGRAGKKGVSHTYFH 520

Query: 351 KED 353
           + D
Sbjct: 521 QGD 523


>gi|297161036|gb|ADI10748.1| ATP-dependent RNA helicase [Streptomyces bingchenggensis BCW-1]
          Length = 433

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 116/334 (34%), Positives = 177/334 (52%), Gaps = 13/334 (3%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G  +P PIQ  T+P  L   DV G  +TG+GKT +F LP+L      RA  + P  LIL 
Sbjct: 9   GVREPFPIQAATLPNALAGRDVLGRGRTGSGKTLAFGLPLLARTAGRRAEPKQPLALILV 68

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA QV +    Y +   L +A ++GG+    Q   L  GA+V++ TPGR+ D   R
Sbjct: 69  PTRELAQQVTEALAPYAEALRLRMATVVGGMSIGRQAAALRHGAEVVVATPGRLHDLIER 128

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
               +  + I V+DEAD+M DMGF+P++  +   V    Q +LFSAT+  ++  +   +L
Sbjct: 129 RACRLGRVGITVLDEADQMCDMGFLPHVSEVLDQVHPDGQRMLFSATLDRDVDHLVRRYL 188

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQQLLQSQDTMKNG--IIFCNQK 255
            +P    V+  +    T++H  +  +   +Y+         + ++   ++G  ++F + K
Sbjct: 189 HDPVVHSVDPSAGAVTTMDHHVLVVHGPDRYA---------VTTEIAARDGRVLLFLDTK 239

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
             V  L   L   G    A+H    Q  R + L+ FK G I ++VA+++AARGL + D+ 
Sbjct: 240 HAVDQLTRHLRASGVHAAALHSGKSQPQRTRTLAQFKNGQITVLVATNVAARGLHVDDLD 299

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            V N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 300 LVVNVDPPTDPKDYVHRAGRTARAGESGSVVTLV 333


>gi|225685109|gb|EEH23393.1| ATP-dependent RNA helicase dhh1 [Paracoccidioides brasiliensis
           Pb03]
          Length = 515

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 192/362 (53%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E+   +    + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 107 ---ERTNPKNSKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLN 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 164 EAVHIIVGTPGRILDLASKGVADLSECSTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQI 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  ++NP  I +     T   I   +   + +  +K   L  L  
Sbjct: 224 MLFSATFPLIVKSFKDKHMRNPYEINL-MDELTLRGITQYYA--FVEEKQKVHCLNTLF- 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQHNRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRYNLYKI 399

Query: 361 EK 362
           E+
Sbjct: 400 EQ 401


>gi|254387768|ref|ZP_05003006.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|326446864|ref|ZP_08221598.1| DEAD-box RNA-helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197701493|gb|EDY47305.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 472

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 119/347 (34%), Positives = 181/347 (52%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL  +++  +   G   P PIQ  T+P  L   D+ G A+TG+GKT +F L +L  
Sbjct: 42  FAELGLPVELMGTLTRLGVRDPFPIQAATLPSALAGRDILGRARTGSGKTLAFGLALLAR 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  + P  L+L PTRELA QV++    Y +   L  A ++GG+    Q   L  G
Sbjct: 102 TAGLRAEAKRPLALVLVPTRELAQQVSEALAPYAEALGLRTATVVGGLAINRQVAALRAG 161

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D   R    ++ + I V+DEAD+M DMGF+P +      +P   Q LL
Sbjct: 162 AEVVVATPGRLADLVARRDCHLDRVRIAVLDEADQMCDMGFLPQVSEALDRMPPGGQRLL 221

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +  ++L  P    V+    +  T+EH  +  +   + K A   ++    
Sbjct: 222 FSATLDRNVDHLVRHYLTEPVPATVDRAEGSVATLEHHVLNVHP--ADKYATATEIAARD 279

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   ++F + K  V      L   G    A+H    Q  R   L+ FK+G + ++VA+
Sbjct: 280 GRV---LMFLDTKHGVDQFTRHLRSSGIQAGALHSGKSQPQRTHTLARFKDGGLTVLVAT 336

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARG+ I  +  V N D P  A++Y+HR GRT RAG  G   TLV
Sbjct: 337 NVAARGIHIEHLDLVVNVDPPADAKDYLHRGGRTARAGESGSVVTLV 383


>gi|297561743|ref|YP_003680717.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846191|gb|ADH68211.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 566

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 126/348 (36%), Positives = 189/348 (54%), Gaps = 5/348 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   +V  +   G   P PIQ  TIP  ++  DV G  +TG+GKT +F LP+L  
Sbjct: 38  FDSLGLPQDIVEELARNGVTTPFPIQAATIPDAIEGRDVLGCGRTGSGKTLAFGLPVLMR 97

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             + RA    PR LIL PTRELA QV D    Y +   + V  ++GG  +  Q  +L RG
Sbjct: 98  AAERRAAANRPRALILVPTRELAHQVRDALRTYARIVGVRVGDVVGGSSYTRQINELRRG 157

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +VL+ TPGR+ D  ++G   + ++E+ V+DEAD+M DMGF+P +  +   V    QTLL
Sbjct: 158 VEVLVATPGRLSDLIDQGACDLGDVEVSVLDEADQMCDMGFMPQVSELLDQVRPDGQTLL 217

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  ++ K+   ++  P+   V+ P S    +EH  +    +   K  ++ Q+   +
Sbjct: 218 FSATLDGDVDKLVRKYMNEPRTHSVDPPVSQVAKMEHHLLKVLPR--DKNTIVTQIAARE 275

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F   K     +   L + G    ++HG   Q  R + L+ F+EG IQ +VA+
Sbjct: 276 ---GRTILFVRSKYRADTISEQLAQAGVPCASLHGGKTQSVRTRTLAKFREGRIQALVAT 332

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           D+AARG+ +  +  V N D+P   ++Y+HR GRT RAG  G   +LVA
Sbjct: 333 DVAARGIHVDGIDMVVNVDLPTGHKDYLHRGGRTARAGASGLVVSLVA 380


>gi|302535427|ref|ZP_07287769.1| DEAD-box RNA helicase [Streptomyces sp. C]
 gi|302444322|gb|EFL16138.1| DEAD-box RNA helicase [Streptomyces sp. C]
          Length = 508

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 120/349 (34%), Positives = 182/349 (52%), Gaps = 9/349 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +  +++ A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 78  FTDLDMPAELLAALGAQGVTVPFPIQGATLPNTLAGRDVLGRGRTGSGKTLAFGLALLAR 137

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  LIL PTRELA QV D    Y +   L +  ++GG+    Q   L  G
Sbjct: 138 TAGLRAEPRQPLALILVPTRELAQQVTDALTPYARAVKLRLTTVVGGMSIGRQAGALRGG 197

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D  +RG+  +N + I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 198 AEVVVATPGRLKDLIDRGECRLNQVAITVLDEADQMTDMGFMPQVTALLDQVRPEGQRML 257

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  +    T+EH  +  +    ++         ++
Sbjct: 258 FSATLDRNVDLLVRRYLIDPVVHSVDPTAGAVTTMEHHVLHVHGADKQRTT-------TE 310

Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              + G  ++F + K  V  L   L   G    A+HG   Q  R + L+ FK G + ++V
Sbjct: 311 IAAREGRVMMFLDTKHAVDRLTQDLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLV 370

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           A+++AARG+ +  +  V N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 371 ATNVAARGIHVDSLDLVVNVDPPTDPKDYLHRGGRTARAGESGSVVTLV 419


>gi|71022799|ref|XP_761629.1| hypothetical protein UM05482.1 [Ustilago maydis 521]
 gi|74699660|sp|Q4P331|IF4A_USTMA RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|46101182|gb|EAK86415.1| hypothetical protein UM05482.1 [Ustilago maydis 521]
          Length = 411

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 203/368 (55%), Gaps = 5/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L  +++  V   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F    + 
Sbjct: 39  NFDNMELKEELLRGVYAYGFERPSAIQARAIVPVIKGHDVIAQAQSGTGKTATF---SIA 95

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    ++  + LIL PTRELA Q+       G    +     IGG        KL  
Sbjct: 96  ILQRIDPSIKAVQALILAPTRELAQQIQKVVIALGDYMKIDCHACIGGTNVREDMAKLNE 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR+ D  NR     + +++  +DEAD ML  GF   +  +  L+P   Q +
Sbjct: 156 GAQVVVGTPGRVYDMINRRAFKTDQLKMFCLDEADEMLSRGFKDQMYEVFQLLPQDTQCV 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+ +V++ F+++P RI V     T E I+  +VA   +  K   L    L  
Sbjct: 216 LLSATMPQEVLEVTKKFMRDPIRILVKRDELTLEGIKQFYVAVEKEDWKLDTLCD--LYE 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++ 
Sbjct: 274 TVTITQAVIFCNTRRKVDWLTDKLTSREFTVSAMHGDMEQAQREVIMREFRSGSSRVLIT 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 334 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTSDDVRMLRDIE 393

Query: 362 KLIEKKVD 369
           +    ++D
Sbjct: 394 QFYSTQID 401


>gi|308493749|ref|XP_003109064.1| hypothetical protein CRE_11850 [Caenorhabditis remanei]
 gi|308247621|gb|EFO91573.1| hypothetical protein CRE_11850 [Caenorhabditis remanei]
          Length = 519

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 198/372 (53%), Gaps = 14/372 (3%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
            G +P ++  +   G+ KP+PIQ +  P++L   D  G++QTG+GKT +F+LP    ++ 
Sbjct: 106 FGNNPAIMAEIEKNGFEKPSPIQSQMWPILLCGKDCIGVSQTGSGKTLAFLLPAFLHIDA 165

Query: 66  GRARVR------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             A+         P  L+L PTRELA Q+    +KY  N   +V L  GG   E Q +  
Sbjct: 166 QLAQYEKNEKKPSPFVLVLSPTRELAQQIEGEVQKYSYNGYKSVCLYGGGSRSE-QVQSC 224

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G +++I TPGR+ D  N G + + ++  +V+DEADRMLDMGF   I+ I   +   R 
Sbjct: 225 KGGVEIVIATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEAAIRRILFEIRPDRL 284

Query: 180 TLLFSATMTDELQKVSENFLQNP-----KRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
             L SAT  + ++ +++ + +         +++ +  S  +  E  F+    ++ + C +
Sbjct: 285 VALTSATWPEGVRNLTDRYTKQAIMAVNGSLDLTSCKSVTQHFE--FIPHENRFERVCEI 342

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +  L  +       IIF   K    +L      +G +   +HG   Q  R   L   + G
Sbjct: 343 VNFLNNAHGNSYKMIIFVKSKVMADHLSSEFCMKGINSQGLHGGRSQSDRELSLKMLRTG 402

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            +Q++VA+DLA+RG+D+PD+ HV N+D P   E Y+HR+GRTGRAGR G++ + +   D 
Sbjct: 403 EVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGESMSFMWWNDR 462

Query: 355 KHIDAIEKLIEK 366
            + D +  ++EK
Sbjct: 463 SNFDGLISILEK 474


>gi|299822903|ref|ZP_07054789.1| DEAD/DEAH box family ATP-dependent RNA helicase [Listeria grayi DSM
           20601]
 gi|299816432|gb|EFI83670.1| DEAD/DEAH box family ATP-dependent RNA helicase [Listeria grayi DSM
           20601]
          Length = 435

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 120/362 (33%), Positives = 197/362 (54%), Gaps = 8/362 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G  P +  A+   G+ +PT +Q K IP +++   + G +QTGTGKT +F+LP++  
Sbjct: 7   FDQFGFQPFINKAIHKIGFYEPTEVQQKLIPGIMRGESIIGQSQTGTGKTHTFLLPLINK 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKLE 120
           ++  +  +++   +I  P+RELA Q+ +   K  +     ++  LLIGG   +    KL+
Sbjct: 67  IDPEKHEIQI---VITAPSRELATQIYNEARKITEESEQPISTRLLIGGTDKQRMLDKLK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGRI D      L +   + LVIDEAD  LDMGF+  +  I   +P   Q 
Sbjct: 124 TQPHIIIGTPGRINDMIREKALAVYTAKALVIDEADMALDMGFLNDVDAIAGKMPPNLQM 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+ ++L+   + +++NP+   +     ++  + H  +A+ ++   K  LL++ L 
Sbjct: 184 LVFSATIPEKLKPFLKKYMENPRYEHIQPKVVSSTAVTHTLLASKSR--DKIDLLKEALT 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  GI+F N K+    +   L ++G  V  IHG++  R R + +   +    Q +V
Sbjct: 242 IFQPFL-GIVFTNTKQTADEVAAGLTERGLKVAKIHGDVSPRERKRTMKQVENMDYQYIV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI  + HV NF++P+  + YIHR GRTGRAG  G A T+    D   +  +
Sbjct: 301 ATDLAARGIDIQGISHVINFELPDDLDFYIHRTGRTGRAGHSGIALTIYDPADEDKLAQL 360

Query: 361 EK 362
           EK
Sbjct: 361 EK 362


>gi|223590058|sp|A5DDF4|PRP5_PICGU RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|190345338|gb|EDK37207.2| hypothetical protein PGUG_01305 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 862

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 134/396 (33%), Positives = 209/396 (52%), Gaps = 25/396 (6%)

Query: 3   FADLGLSPKVVCAVLDA--GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +A LGL P  +  VL+   GY  P+PIQ + +P ++   D+ G+A TG+GKT +FV+P++
Sbjct: 268 WAQLGL-PSSIMTVLEEKLGYDTPSPIQSQALPAIMSGRDIIGVANTGSGKTLAFVIPLI 326

Query: 61  ------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   L+ G      P  +IL PTRELA Q+      + +   L+V    GG P E+
Sbjct: 327 RHIMDQPPLKSGDG----PIGVILTPTRELALQIQKELVNFTQAVELSVCCCYGGSPIES 382

Query: 115 QNKKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNIT 171
           Q   L+RG ++++ TPGR++D    N G++  +     LV+DEADRM DMGF P +  + 
Sbjct: 383 QIADLKRGTEIIVGTPGRVIDLLAANGGRVTNLRRTTFLVLDEADRMFDMGFEPQVNKVL 442

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S +   +Q +LFSAT   +L+ ++ +FL +P  I     S  A  I    V         
Sbjct: 443 SQIRPDKQMVLFSATFPKKLESLARSFLVDPIEIVAGGISVVAPEITQRVVLIDDSGDIS 502

Query: 232 CALLQQLLQ------SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
              LQ LL+       +D     +IF ++++   +L   L     S   IHG  DQ  R 
Sbjct: 503 QKKLQALLKIVDEFSVEDPEGKILIFVDKQEAADDLMVRLLNNQISCIVIHGGKDQVDRK 562

Query: 286 KILSNFKEGT-IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
             +  F +   +++++A+ +AARGLD+  +  V N+D P+  E+Y+HR+GRTGRAG  G 
Sbjct: 563 HAIKQFSDKNGLRVLIATSIAARGLDVRGLNLVINYDAPSHMEDYVHRVGRTGRAGATGT 622

Query: 345 AFTLVAKEDIKHI-DAIEKL-IEKKVDWLNGDLSSL 378
           A TLV     + I D +  + +  KVD +  +L S+
Sbjct: 623 AVTLVLSSQEREIRDLVRAMKMSGKVDDIPAELQSI 658


>gi|297842017|ref|XP_002888890.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297334731|gb|EFH65149.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 414

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 197/379 (51%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 43  FDAMELKPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    + +    L+L PTRELA Q+       G    +     +GG       + L+ G
Sbjct: 103 LDISLVQCQ---ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSG 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 160 VHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGV 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 220 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLA 279

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 280 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   +  ED + +  
Sbjct: 335 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTTEDERMLAD 394

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     V+ L  +++ L
Sbjct: 395 IQRFYNVVVEELPSNVADL 413


>gi|297812857|ref|XP_002874312.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
 gi|297320149|gb|EFH50571.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
          Length = 748

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 121/346 (34%), Positives = 196/346 (56%), Gaps = 14/346 (4%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--EKG-----RARVRMPRTLIL 78
           PIQ   +   LQ  D+   A+TGTGKT +F +P++  L  E G     R   R+P+ L+L
Sbjct: 127 PIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYSAFRRSGRLPKFLVL 186

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QV    ++      L+   + GG+ +  Q   L RG DV++ TPGRI+D   
Sbjct: 187 APTRELAKQVEKEIKESAPY--LSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIE 244

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
              L +  +E LV+DEAD+ML +GF   +++I   +P  RQ++LFSATM   ++K++  +
Sbjct: 245 GRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKY 304

Query: 199 LQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
           L NP  I++  +     AE I+   +AT +  + K  +L  L+         I+F   K+
Sbjct: 305 LDNPLNIDLVGDQDEKLAEGIKLYAIATTS--TSKRTILSDLITVYAKGGKTIVFTQTKR 362

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
           +   +  +L     +  A+HG+I Q  R + L+ F++G   ++VA+D+A+RGLDIP+V  
Sbjct: 363 DADEVSLALSNS-IATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDL 421

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           V ++++PN  E ++HR GRTGRAG+ G A  +      + + ++E+
Sbjct: 422 VIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLER 467


>gi|21223065|ref|NP_628844.1| DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
 gi|7321275|emb|CAB82053.1| putative DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
          Length = 473

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 183/347 (52%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +  +++ A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 47  FADLDMPAELLAALESQGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA    P  L+L PTRELA QV D    Y ++  L +  ++GG+    Q   L  G
Sbjct: 107 TAGRRAEPGQPLGLVLVPTRELAQQVTDALRPYARSVKLRLTAVVGGMSIGRQASALRGG 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +V++ TPGR+ D  +RG   +N + + V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 167 VEVVVATPGRLKDLIDRGDCRLNQVSVTVLDEADQMADMGFMPQVTALLDQVRPEGQRML 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  +    T+EH  +  +   + K A   ++    
Sbjct: 227 FSATLDRNVDLLVRRYLSDPVVHSVDPSAGAVTTMEHHVL--HVHGADKHAATTEIAARD 284

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   ++F + K  V  L   L   G    A+HG   Q  R + L+ FK G + ++VA+
Sbjct: 285 GRV---LMFLDTKHAVDRLTDHLLNSGVRAAALHGGKSQSQRTRTLAQFKTGHVTVLVAT 341

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARG+ + ++  V N D P+  ++Y+HR GRT RAG  G   TLV
Sbjct: 342 NVAARGIHVDNLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTLV 388


>gi|116203955|ref|XP_001227788.1| hypothetical protein CHGG_09861 [Chaetomium globosum CBS 148.51]
 gi|118582180|sp|Q2GQ93|DHH1_CHAGB RecName: Full=ATP-dependent RNA helicase DHH1
 gi|88175989|gb|EAQ83457.1| hypothetical protein CHGG_09861 [Chaetomium globosum CBS 148.51]
          Length = 512

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 124/362 (34%), Positives = 193/362 (53%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF D GL   ++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 11  LDFEDFGLKRDLLMGIFEAGFEKPSPIQEESIPVALVGRDILARAKNGTGKTAAFVIPAL 70

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK   +V   + LIL PTRELA Q +   +  GK+  + V +  GG        +L+
Sbjct: 71  ---EKINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIVRLQ 127

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +    ++   + ++DEAD++L + F P I+ +    P  RQ 
Sbjct: 128 DPVHIVVGTPGRILDLAGKQVADLSECPMFIMDEADKLLSIEFTPVIEQLLRFHPKDRQV 187

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++  S+  + +P  I +     T   I   +   Y +  +K   L  L  
Sbjct: 188 MLFSATFPISVKDFSDKNMTSPYEINLMD-ELTLRGITQYY--AYVEEKQKVHCLNTLF- 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q++R ++  +F+ G  + +V
Sbjct: 244 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMAQQARNRVFHDFRNGVCRNLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 304 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNI 363

Query: 361 EK 362
           E+
Sbjct: 364 ER 365


>gi|79328737|ref|NP_001031943.1| emb1138 (embryo defective 1138); ATP binding / ATP-dependent
           helicase/ RNA binding / helicase/ nucleic acid binding /
           zinc ion binding [Arabidopsis thaliana]
 gi|108861893|sp|Q8L7S8|RH3_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
           AltName: Full=Protein EMBRYO DEFECTIVE 1138; Flags:
           Precursor
 gi|19347898|gb|AAL85971.1| unknown protein [Arabidopsis thaliana]
 gi|20259537|gb|AAM13888.1| unknown protein [Arabidopsis thaliana]
 gi|20453225|gb|AAM19851.1| At5g26752 [Arabidopsis thaliana]
 gi|21689779|gb|AAM67533.1| unknown protein [Arabidopsis thaliana]
 gi|23397145|gb|AAN31856.1| unknown protein [Arabidopsis thaliana]
 gi|25090432|gb|AAN72300.1| At5g26752/At5g26752 [Arabidopsis thaliana]
 gi|27311701|gb|AAO00816.1| Unknown protein [Arabidopsis thaliana]
 gi|110739485|dbj|BAF01652.1| hypothetical protein [Arabidopsis thaliana]
 gi|332006182|gb|AED93565.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
          Length = 748

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 121/346 (34%), Positives = 196/346 (56%), Gaps = 14/346 (4%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--EKG-----RARVRMPRTLIL 78
           PIQ   +   LQ  D+   A+TGTGKT +F +P++  L  E G     R   R+P+ L+L
Sbjct: 127 PIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVL 186

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QV    ++      L+   + GG+ +  Q   L RG DV++ TPGRI+D   
Sbjct: 187 APTRELAKQVEKEIKESAPY--LSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIE 244

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
              L +  +E LV+DEAD+ML +GF   +++I   +P  RQ++LFSATM   ++K++  +
Sbjct: 245 GRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKY 304

Query: 199 LQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
           L NP  I++  +     AE I+   +AT +  + K  +L  L+         I+F   K+
Sbjct: 305 LDNPLNIDLVGDQDEKLAEGIKLYAIATTS--TSKRTILSDLITVYAKGGKTIVFTQTKR 362

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
           +   +  +L     +  A+HG+I Q  R + L+ F++G   ++VA+D+A+RGLDIP+V  
Sbjct: 363 DADEVSLALSNS-IATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDL 421

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           V ++++PN  E ++HR GRTGRAG+ G A  +      + + ++E+
Sbjct: 422 VIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLER 467


>gi|30690260|ref|NP_680225.2| emb1138 (embryo defective 1138); ATP binding / ATP-dependent
           helicase/ RNA binding / helicase/ nucleic acid binding /
           zinc ion binding [Arabidopsis thaliana]
 gi|20856975|gb|AAM26693.1| At5g26743 [Arabidopsis thaliana]
 gi|28416497|gb|AAO42779.1| At5g26743 [Arabidopsis thaliana]
 gi|332006181|gb|AED93564.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
          Length = 747

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 121/346 (34%), Positives = 196/346 (56%), Gaps = 14/346 (4%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--EKG-----RARVRMPRTLIL 78
           PIQ   +   LQ  D+   A+TGTGKT +F +P++  L  E G     R   R+P+ L+L
Sbjct: 127 PIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVL 186

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QV    ++      L+   + GG+ +  Q   L RG DV++ TPGRI+D   
Sbjct: 187 APTRELAKQVEKEIKESAPY--LSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIE 244

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
              L +  +E LV+DEAD+ML +GF   +++I   +P  RQ++LFSATM   ++K++  +
Sbjct: 245 GRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKY 304

Query: 199 LQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
           L NP  I++  +     AE I+   +AT +  + K  +L  L+         I+F   K+
Sbjct: 305 LDNPLNIDLVGDQDEKLAEGIKLYAIATTS--TSKRTILSDLITVYAKGGKTIVFTQTKR 362

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
           +   +  +L     +  A+HG+I Q  R + L+ F++G   ++VA+D+A+RGLDIP+V  
Sbjct: 363 DADEVSLALSNS-IATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDL 421

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           V ++++PN  E ++HR GRTGRAG+ G A  +      + + ++E+
Sbjct: 422 VIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLER 467


>gi|2500518|sp|Q40465|IF411_TOBAC RecName: Full=Eukaryotic initiation factor 4A-11; Short=eIF-4A-11;
           AltName: Full=ATP-dependent RNA helicase eIF4A-11
 gi|485987|emb|CAA55737.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 198/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+      +    L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 102 LDYSLVECQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIG +GR GR G +   V K+D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGHSGRFGRKGVSINFVTKDDERMLFD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     ++ L  +++ L
Sbjct: 394 IQKFYNVVIEELPANVADL 412


>gi|308800454|ref|XP_003075008.1| Ddx49 Ddx49-related DEAD box helicase superfamily II protein (IC)
           [Ostreococcus tauri]
 gi|119358858|emb|CAL52279.2| Ddx49 Ddx49-related DEAD box helicase superfamily II protein (IC)
           [Ostreococcus tauri]
          Length = 419

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 129/372 (34%), Positives = 194/372 (52%), Gaps = 10/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL   V+  +    +  P+ +Q   IP +L   DV GIA TG+GKTA+F LP++ +
Sbjct: 4   FDELGLCNVVLKILKRVHFRSPSDVQSTCIPQILAGKDVIGIANTGSGKTAAFALPIVDM 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    +     L L PTRELA Q+AD F  +G    L   ++ GG     Q   L R 
Sbjct: 64  LSRDPYGIF---ALCLSPTRELANQIADQFTVFGAGTGLNCMVITGGEDLIQQATALSRR 120

Query: 123 ADVLICTPGRILDHFNRGK---LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            ++++ TPGR+ +HF          + ++ L++DEADR+LD  F   ++ + S +P  RQ
Sbjct: 121 PNIVVATPGRLFEHFMHSSNTVQYFSKLKCLILDEADRLLDSSFAAELKYLMSNLPQQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE--TIEHCFVATYAQYSKKCALLQQ 237
           TL+FSAT+T  +  +           E  +   TA   +  +CF+    +      L+++
Sbjct: 181 TLMFSATITKSVTALQSMLGDAVFYYEDKSVKKTAVRCSQSYCFMPERIKDVNLVKLVRE 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   +   K  IIF    +    L   L   G    ++H    Q+ R+  L  FK GT+Q
Sbjct: 241 LALVE--AKRTIIFTATIQKCELLSQMLTTLGIPSSSLHAAKKQKERLNSLGVFKNGTVQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+P V  + N+DVP     YIHRIGRT R    GKA T V + DI  +
Sbjct: 299 ILVATDVAARGLDLPSVDMILNYDVPTDVRQYIHRIGRTARFEASGKAVTFVTQFDILKL 358

Query: 358 DAIEKLIEKKVD 369
             IEK I +++D
Sbjct: 359 KHIEKTIGQQLD 370


>gi|317140737|ref|XP_001818384.2| ATP-dependent RNA helicase eIF4A [Aspergillus oryzae RIB40]
          Length = 397

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 212/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P+++  V   G+ +P+ IQ + I  +++  DV   AQ+GTGKTA+F    ++ 
Sbjct: 26  FDAMELKPELLRGVYAYGFERPSAIQQRAIKPIIKGSDVIAQAQSGTGKTATF---SISA 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    V+  + LIL PTRELA Q+       G   N+T    IGG       K L  G
Sbjct: 83  LQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNITCHACIGGTAVREDMKALGEG 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +V++ TPGR+ D   R  L  ++++  ++DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 143 PEVVVGTPGRVHDMIQRRVLKTDHLKQFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 203 LSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 261

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A+
Sbjct: 262 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIAT 320

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 321 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 380

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 381 FYSTQIEEMPMNVADL 396


>gi|304385240|ref|ZP_07367585.1| ATP-dependent RNA helicase DbpA [Pediococcus acidilactici DSM
           20284]
 gi|304328447|gb|EFL95668.1| ATP-dependent RNA helicase DbpA [Pediococcus acidilactici DSM
           20284]
          Length = 453

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 195/353 (55%), Gaps = 15/353 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    L P ++ A+   G+VKPTP+Q + IPL+ +   V G +QTG+GKT +F+LP+  
Sbjct: 3   EFQKFNLKPFLMQALDQIGFVKPTPVQERVIPLIAEGQSVVGQSQTGSGKTHAFLLPIFN 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL--LIGGIPFEAQNKKL 119
            ++  +  ++    +I  P+RELA Q+ +  ++        + +   +GG   + Q  KL
Sbjct: 63  QIDPAKNAIQ---AVITTPSRELAYQIYEAAKQLAAASETPIEIGNYVGGTDKKRQIAKL 119

Query: 120 ER-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           E     ++I TPGR+LD      L    ++ LVIDEAD  LDMGF+  +  I + +P   
Sbjct: 120 EHHQPAIVIGTPGRVLDLLQARALNFRQVQYLVIDEADMTLDMGFLSAVDQIAASMPENL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+  +L    + ++++P   E+   ++ + TI++  ++T +Q   K  L+ QL
Sbjct: 180 QMLVFSATIPQQLNVFLQKYMKHPAIEEIPVATTISPTIKNILISTKSQ--DKNNLIYQL 237

Query: 239 LQSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L    TM      ++F N K+    L + L+ QG  V  IHG I  R R +I+ +     
Sbjct: 238 L----TMGEPYLALVFTNTKERADELTNYLKSQGLPVAKIHGGIPPRERKRIMKDIHRLR 293

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            Q +VA+DLAARG+DI  V  V N D+P   E +IHR+GRTGR G  G A TL
Sbjct: 294 YQYVVATDLAARGIDIEGVSLVINDDIPTDLEFFIHRVGRTGRNGLPGTAITL 346


>gi|145506835|ref|XP_001439378.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406562|emb|CAK71981.1| unnamed protein product [Paramecium tetraurelia]
          Length = 442

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 136/356 (38%), Positives = 196/356 (55%), Gaps = 23/356 (6%)

Query: 5   DLGLSPKVVCAVLDAGYV-KPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
           D    PK   ++L +  +  PTPIQ   IPL+L+ +DV  +A+TG+GKT ++ LP +  +
Sbjct: 64  DFDFLPKEYSSILSSKSITSPTPIQKAIIPLILEGNDVIAVAETGSGKTLAYALPGVIHI 123

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFE-------KYGKNY-NLTVALLIGGIPFEAQ 115
           +  + +   PR L+L PTREL  Q+   +E        YG  Y NL  + L+G I     
Sbjct: 124 Q-AQPQALGPRILVLAPTRELVQQIQTQYELFTRTCCVYGGVYKNLQYSELLG-IKQSRN 181

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           N  L     V+I TPGR+LD    G  L  +I  +V+DEADRMLDMGF   I  I   V 
Sbjct: 182 NISL---PSVIIGTPGRLLDFMKDGYPL-KSITQVVLDEADRMLDMGFEEQITQIFQKVR 237

Query: 176 FTRQTLLFSATMTDELQKVSENFL--QNPKRIEVNTPS-STAETIEHCFVATYAQYSKKC 232
             RQTL FSAT   E+QK++ NFL  +NP  +++     S  + I+   +  Y    ++ 
Sbjct: 238 KERQTLFFSATWPKEVQKLA-NFLCNENPNLLQIGEQGLSVNKNIQQEIIIVYENKFEQF 296

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + L+ Q  +    IFC +K +   L + L   G     +HG++ Q  R  I+ +FK
Sbjct: 297 VELAERLKGQKLL----IFCQKKIDTQKLEYRLSLHGLKARYLHGDLKQAERDYIMEDFK 352

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            G I  ++ ++LA+RGLDI DV  V N+D P+  E+YIHRIGRTGRAG+ G A + 
Sbjct: 353 TGAINCLITTNLASRGLDISDVDVVINYDFPDNIEDYIHRIGRTGRAGKKGLAISF 408


>gi|302543182|ref|ZP_07295524.1| putative ATP-dependent RNA helicase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302460800|gb|EFL23893.1| putative ATP-dependent RNA helicase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 498

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 122/347 (35%), Positives = 184/347 (53%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L + P ++ A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 61  FAELDMPPALLAALAAEGMAVPFPIQGATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 120

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y +   L +  ++GG+    Q   L  G
Sbjct: 121 TAGQRAEPRRPLGLVLVPTRELAQQVTDALAPYARALKLRLTTVVGGMAIGRQAGALRGG 180

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D  +RG   +N + I V+DEAD+M DMGF+P +  + + V    Q +L
Sbjct: 181 AEVVVATPGRLKDLIDRGDCHLNQVGITVLDEADQMADMGFMPQVTALLNQVRPEGQRML 240

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  +    T+EH  +  +   + K A   ++    
Sbjct: 241 FSATLDRNVDLLVRRYLADPVVHSVDPSAGAVTTMEHHLL--HVDGADKHATTTEIAARD 298

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F + K  V  L   L   G    A+HG   Q  R + L+ FK G + ++VA+
Sbjct: 299 GRV---IMFLDTKHAVDKLTQHLLNSGVRAAALHGGKSQPQRTRTLAQFKTGDVTVLVAT 355

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 356 NVAARGIHVDNLDLVVNVDPPGDHKDYLHRGGRTARAGESGSVVTLV 402


>gi|157135580|ref|XP_001656674.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|157135584|ref|XP_001656676.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|94468792|gb|ABF18245.1| initiation factor EIF-4A [Aedes aegypti]
 gi|108870173|gb|EAT34398.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108870175|gb|EAT34400.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 404

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 131/377 (34%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 32  NFDDMHLKEQLLRGIYAYGFEKPSAIQQRAIMPCIKGHDVIAQAQSGTGKTATFSIAILQ 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++   A  +    LIL PTRELA Q+       G          IGG       +KLE 
Sbjct: 92  QIDTSIAECQ---ALILAPTRELATQIQKVVIALGDYLGAQCHACIGGTNVRDDMRKLEM 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D  +R  L  ++I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 149 GCHIVVGTPGRVHDMISRNVLRPSHIKLFVLDEADEMLSRGFKDQIQDVFRMLPNDVQVI 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+ +VS +F+++P +I V     T E I+  ++    +  K   L+   L  
Sbjct: 209 LLSATMPAEVLEVSTHFMRDPIKILVKKEELTLEGIKQFYIDVKQENWKLGTLID--LYD 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +  Q F+V ++HG++DQR R  I+  F+ G+ ++++ 
Sbjct: 267 TLSITQAVIFCNTRRKVDQLTADMTSQSFTVSSMHGDMDQRDRDLIMKQFRTGSSRVLIT 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V   D + +  IE
Sbjct: 327 TDLLARGIDVQQVSLVINYDLPTLRENYIHRIGRGGRFGRKGVAINFVTDVDRRVLQDIE 386

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    K++ +  +L+ +
Sbjct: 387 KHYNTKIEEMPANLADM 403


>gi|261193373|ref|XP_002623092.1| ATP-dependent RNA helicase DBP4 [Ajellomyces dermatitidis SLH14081]
 gi|239588697|gb|EEQ71340.1| ATP-dependent RNA helicase DBP4 [Ajellomyces dermatitidis SLH14081]
          Length = 810

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 132/392 (33%), Positives = 215/392 (54%), Gaps = 26/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL LS   +  +  + +   T IQ K IP  L+  D+ G A+TG+GKT +F++P+L +
Sbjct: 51  FSDLPLSEPTLNGLSASHFKSLTDIQAKAIPHALKGRDILGAAKTGSGKTLAFLVPLLEL 110

Query: 63  L-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  K          L+L PTRELA Q+ +   K G+++  +  L+IGG   + + ++L R
Sbjct: 111 LYRKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHTFSAGLVIGGKSLQEEQERLGR 170

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++      N+I++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 171 -MNILVCTPGRMLQHMDQTAAFDTNHIQLLVLDEADRIMDMGFQSTVDAIIDHLPKERQT 229

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVN--TPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +LFSAT T ++  ++   L+NP+ I V+    S+T   ++  ++ T     +K   L   
Sbjct: 230 MLFSATQTKKVSDLARLSLRNPEYISVHETAASATPAKLQQNYIVT--PLPEKLDTLWSF 287

Query: 239 LQSQDTMKNGI-IFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++S  ++K+ I +F +  K V  +  S    + G S+  +HG   Q +R+ I   F    
Sbjct: 288 IRS--SLKSKIMVFFSSGKQVRFVYESFRHMQPGISLLHLHGRQKQGARVDITKKFSAAK 345

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
              + ++D+AARGLD P V  V   D P  A+ YIHR GRT R  R+G+A   +  E  +
Sbjct: 346 HACLFSTDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFL--EPSE 403

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
               +++L +KK+            P+EKI+I
Sbjct: 404 EAGMLKRLEQKKI------------PIEKINI 423


>gi|51317205|gb|AAT99858.1| unknown [Diachasmimorpha longicaudata entomopoxvirus]
          Length = 379

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 121/371 (32%), Positives = 199/371 (53%), Gaps = 7/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  +GL   ++  +   G+ KP+ IQ K I   +   DV   AQ+GTGKTA++ + +L 
Sbjct: 7   EFDHMGLKKNILKGIYSCGFEKPSTIQQKAIFPCISGKDVIVQAQSGTGKTATYAISVLQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            ++   + ++    LIL PTRELA Q     +  G   YN    + IGG   +   + L+
Sbjct: 67  QIDTSNSNIQ---ALILTPTRELALQAQRVLQTIGNYLYNFKCQVCIGGTSIKESQETLK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           + A VLI TPGR++D   R  +    I+I+VIDEAD ML   F+  IQ+I        Q 
Sbjct: 124 K-AQVLIGTPGRMIDLLTRKSIDTKAIKIVVIDEADEMLIDNFLDKIQDIFEFFESHVQV 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SAT+   +   S+ F+++P +I V     T E I   ++       K   L    L 
Sbjct: 183 ILLSATVPSRVINTSQVFMRDPVKILVKNAELTLEGIRQYYINVKKNDFKAETLFD--LY 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++   +IFCN ++ V  L   L  + F+  +IHG++ Q+ R  I+  F++G  ++++
Sbjct: 241 DHLSLTQTLIFCNTRRQVDVLMECLTNRNFTASSIHGDMSQQERDFIMKEFRDGKTRILL 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +++L ARG+D+  +  V N+D+P+  ENYIHRIGR+GR GR G A   + ++++  +  +
Sbjct: 301 STNLLARGIDVQQISLVINYDLPHNRENYIHRIGRSGRFGRKGIAINFITEDELPKLAEL 360

Query: 361 EKLIEKKVDWL 371
           E     K+D +
Sbjct: 361 ETFYNTKIDEM 371


>gi|222144592|gb|ACM46113.1| DDX3/PL10 DEAD-box RNA helicase [Schmidtea polychroa]
          Length = 458

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 128/346 (36%), Positives = 189/346 (54%), Gaps = 25/346 (7%)

Query: 46  QTGTGKTASFVLPMLTI---------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG 96
           QTG+GKTA+F++P+L +         L +   +   P  LIL PTRELA Q+ +   K+ 
Sbjct: 1   QTGSGKTAAFLIPLLNMMYNDGPGNSLSRTGYKKEYPVALILAPTRELALQIYEEARKFS 60

Query: 97  KNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEAD 156
               +   ++ GG     Q + L +G ++L+ TPGR+ D   R ++ ++ I  LV+DEAD
Sbjct: 61  YRSLVRPCVVYGGADIRNQLQDLSQGCNMLVATPGRLSDMLERCRIGLDCIRYLVLDEAD 120

Query: 157 RMLDMGFIPYIQNITSLV----PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS 212
           RMLDMGF P I+ I        P  RQTL+FSAT   E+Q ++ +FLQ+   + V    S
Sbjct: 121 RMLDMGFEPQIRKIVEQTNMPPPGQRQTLMFSATFPKEIQMLASDFLQDYLFLRVGKVGS 180

Query: 213 TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
           T++ I    V  Y   S+K   L  +L   D+    ++F   K+   +L   L  +GF V
Sbjct: 181 TSQNITQRIV--YVDESEKRDHLLDILADIDSESLILVFVETKRGADSLEGFLHGEGFRV 238

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
            +IHG+  Q  R   L  F++G   ++VA+ +AARGLDIP+V  V N+D+P   E Y+HR
Sbjct: 239 ASIHGDRSQSDRELALQCFRDGRTPILVATAVAARGLDIPNVKFVINYDLPTDIEEYVHR 298

Query: 333 IGRTGRAGRHGKAFTL-------VAKEDIKHIDAIEKLIEKKVDWL 371
           IGRTGR G  G+A +        VAKE    +D + +  +   DWL
Sbjct: 299 IGRTGRVGNLGEAISFYTDKNNNVAKE---LVDILLEANQTVPDWL 341


>gi|114630811|ref|XP_507825.2| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Pan troglodytes]
          Length = 783

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 131/355 (36%), Positives = 201/355 (56%), Gaps = 21/355 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ KT   V    D+   A+TGTGKT SF +P++  
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247

Query: 63  LE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L    + R R R P+ L+L PTRELA QV+ +F    K   L+VA   GG P+  Q +++
Sbjct: 248 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 305

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   GKL +  ++ +V+DE D+MLDMGF   ++ I S V + + 
Sbjct: 306 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILS-VAYKKD 364

Query: 179 -----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSK 230
                QTLLFSAT    +  V++ ++++  +++++       TA T+EH  +A    +++
Sbjct: 365 SEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEH--LAIKCHWTQ 422

Query: 231 KCALLQQLLQSQDTMKN-GIIFCNQKKNVVNLCH-SLEKQGFSVCAIHGNIDQRSRMKIL 288
           + A++  +++     +   IIFC  KK    L   S  KQ     ++HG+I Q+ R   L
Sbjct: 423 RAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ--DAQSLHGDIPQKQREITL 480

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
             F+ G+  ++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 481 KGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTG 535


>gi|45190904|ref|NP_985158.1| AER301Cp [Ashbya gossypii ATCC 10895]
 gi|74693373|sp|Q756G5|DBP8_ASHGO RecName: Full=ATP-dependent RNA helicase DBP8
 gi|44983946|gb|AAS52982.1| AER301Cp [Ashbya gossypii ATCC 10895]
          Length = 435

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 140/427 (32%), Positives = 218/427 (51%), Gaps = 21/427 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG++  +  A+      +PT IQ   IP +L   D  G A+TG+GKT +F  PMLT 
Sbjct: 8   FKDLGVAKWLAEALNSMKITQPTTIQKACIPEILAGRDCIGGAKTGSGKTIAFAAPMLT- 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             K  A       ++L PTRELA Q+A+ F   G   N+ VAL++GG    +Q  +L+R 
Sbjct: 67  --KWSADPCGMFGIVLTPTRELAMQIAEQFTALGSVMNIRVALVVGGEDIVSQALELQRK 124

Query: 123 ADVLICTPGRILDH-FNRGKLL---MNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176
              +I TPGR+  H  + G+     +  +  LV+DEAD +L   F   +     ++P   
Sbjct: 125 PHFIIATPGRLAHHIMHSGEDTIGGLKRVRYLVLDEADILLTDTFSDALATCVQILPPKE 184

Query: 177 TRQTLLFSATMTDELQKVSEN--FLQNPKRIEVNTPSSTAETIEHCFVATY---AQYSKK 231
            RQ LLF+ATMTD++  + +       P     +  +     +      TY    ++ K+
Sbjct: 185 KRQNLLFTATMTDQVLALKDAPPTSGKPPLFSFHVENLDDLAVPASLQTTYLLVPEHVKE 244

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L Q L   +   K+ I+F N+  +   L   L +    V ++H  + QR R   L  F
Sbjct: 245 AYLYQVLSSEEYKSKSAIVFVNRTISAEILRRMLMQLEIRVTSLHSQMPQRERTNSLQRF 304

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +    ++++A+D+A+RGLDIP V  V N+D+P   + YIHR GRT RAGR G+A + +A 
Sbjct: 305 RANAARVLIATDVASRGLDIPAVQLVVNYDIPANPDTYIHRAGRTARAGRGGEALSFIAP 364

Query: 352 EDIKHIDAIEKLIEKKVDWLN--GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           +D+  I AIE+ I KK+D     GD + +   L K+ +     A++ + +     GF  R
Sbjct: 365 KDVSRIQAIEERIGKKMDEFTKVGDTALIRKSLNKVTV-----AKRESLMAMDKEGFGER 419

Query: 410 KKNYSSQ 416
           +K   S+
Sbjct: 420 RKTQRSK 426


>gi|294053581|ref|YP_003547239.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293612914|gb|ADE53069.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 373

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 126/365 (34%), Positives = 201/365 (55%), Gaps = 12/365 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F+ +G+   +V  +   G  +PTPIQ K IPL+L+ + D+   AQTGTGKTA+F LP+LT
Sbjct: 6   FSAMGVPDDLVEGISALGIHEPTPIQTKVIPLLLEDQSDLIAQAQTGTGKTAAFGLPLLT 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADN---FEKYGKNYNLTVALLIGGIPFEAQNKK 118
            ++  +  ++    LI+ PTRELA Q+      F K+ K   + V +  GG   E Q ++
Sbjct: 66  KVDPSKEGIQ---ALIVAPTRELAKQIGKQLFRFTKFSKK-KVFVEVTAGGDKIEIQAER 121

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+R   +++ TPGR++D      L + +++ LV+DEAD ML MGF   +  I  L    R
Sbjct: 122 LQRPTQIVVATPGRLMDLLELNALNLESVQYLVLDEADEMLSMGFRAELAKIFKLTKRRR 181

Query: 179 QTLLFSATMTDELQKVS-ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            T LFSAT  D++++++ +N   + + ++V         IEH F     +   K   +  
Sbjct: 182 GTWLFSATFQDKVKRLAADNLSPDARMLKVAKKEVVNRNIEHSFAVCSRE--DKDEFILD 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L+S+ T + G+IF   K   + L   L   G  V  + G++ QR R K++  FK    Q
Sbjct: 240 YLKSKGTQR-GMIFVRTKAGAIRLGEVLRDAGVPVGVLQGDLSQRDRDKVMRIFKRKESQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  +  V    +P+  + Y HR GRT RAG+ G + TL+  ++   I
Sbjct: 299 VLVATDVAARGIDIEALAFVIQHQLPDAGQYYTHRAGRTARAGKRGVSLTLIEPKERSKI 358

Query: 358 DAIEK 362
             +E+
Sbjct: 359 TKLEQ 363


>gi|320034926|gb|EFW16869.1| ATP-dependent RNA helicase dhh1 [Coccidioides posadasii str.
           Silveira]
          Length = 512

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 194/362 (53%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P  
Sbjct: 47  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIP-- 104

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE+   ++   + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 105 -TLERTNPKISKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLS 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 164 DTVHIIVGTPGRILDLASKGVADLSECTTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  ++NP  I +     T   I   +   + +  +K   L  L  
Sbjct: 224 MLFSATFPMIVKSFKDKHMRNPYEINL-MDELTLRGITQYYA--FVEERQKVHCLNTLF- 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q++R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQNRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRYNLYKI 399

Query: 361 EK 362
           E+
Sbjct: 400 EQ 401


>gi|3776021|emb|CAA09211.1| RNA helicase [Arabidopsis thaliana]
          Length = 441

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 197/379 (51%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 70  FDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 129

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    + +    L+L PTRELA Q+       G    +     +GG       + L+ G
Sbjct: 130 LDISLVQCQ---ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSG 186

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 187 VHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGV 246

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 247 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLA 306

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 307 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 361

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   +  ED + +  
Sbjct: 362 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMAD 421

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     V+ L  +++ L
Sbjct: 422 IQRFYNVVVEELPSNVADL 440


>gi|302802223|ref|XP_002982867.1| hypothetical protein SELMODRAFT_52119 [Selaginella moellendorffii]
 gi|300149457|gb|EFJ16112.1| hypothetical protein SELMODRAFT_52119 [Selaginella moellendorffii]
          Length = 431

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 134/409 (32%), Positives = 209/409 (51%), Gaps = 40/409 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L   +   +    +  PT +Q   IP+ L   D+   AQTG+GKTA+F  P++  
Sbjct: 15  FDDLSLHSILNDNIRKCRFAVPTLVQKYAIPICLAARDLMACAQTGSGKTAAFCFPIIEG 74

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQ--------VADNFEKYGKNYNLTVALLI 107
           +        +GR RV +P  LIL PTRELA Q        ++ +F  + +++   +A   
Sbjct: 75  ILREPVPGREGRRRVSIPLALILSPTRELAQQASIELSLPISFSFVSFPRSFWWQIADEA 134

Query: 108 GGIPFEAQNKKLER------------GADVLICTPGRILDHFNRGKLLMNNIEILVIDEA 155
               ++   +                G D+L+ TPGR+ D  +R  + +  ++ L +DEA
Sbjct: 135 FKFCYQTGVRVGVVYGGTRLWSDNLGGVDILVATPGRLNDLLDREMVELRKLKYLTLDEA 194

Query: 156 DRMLDMGFIPYIQNIT--SLVPFT--RQTLLFSATMTDELQKVSENFLQNPKR-IEVNTP 210
           DRMLDMGF P I+ I   S +P    RQTL+FSAT   ++Q+++  FL+     + +   
Sbjct: 195 DRMLDMGFEPQIRRIVEESGMPGAELRQTLMFSATFPKKIQRLAGEFLRKDYVFLAIGEV 254

Query: 211 SSTAETIEHCFVATYAQYSKKCALL----QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLE 266
            S+   IE   +         C  +    QQ+  S+  ++  ++F   K    +L   L 
Sbjct: 255 GSSTSRIEQEIIFVQRNQKHDCLGMVIDRQQMHGSKSNVRKTLVFVGTKLKADDLEIWLR 314

Query: 267 KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
            +G+   AIHG+  Q  R + L +FK G+  L+VA+++A+RG+DIPDV HV NFD+P   
Sbjct: 315 SRGYVAIAIHGDKTQEERRRALKSFKSGSTPLLVATEVASRGIDIPDVSHVINFDLPTNI 374

Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDI----KHIDAIEKLIEKKVDWL 371
           ++Y+HRIGRTGRAG+ G A  L    D     K +  +E   ++  DWL
Sbjct: 375 DDYVHRIGRTGRAGKRGFATALFCDGDAPLAHKLVHLLESCNQQVPDWL 423


>gi|119195455|ref|XP_001248331.1| conserved hypothetical protein [Coccidioides immitis RS]
 gi|118582181|sp|Q1E5R1|DHH1_COCIM RecName: Full=ATP-dependent RNA helicase DHH1
          Length = 512

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 194/362 (53%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P  
Sbjct: 47  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIP-- 104

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE+   ++   + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 105 -TLERTNPKISKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLS 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 164 DTVHIIVGTPGRILDLASKGVADLSECTTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  ++NP  I +     T   I   +   + +  +K   L  L  
Sbjct: 224 MLFSATFPMIVKSFKDKHMRNPYEINL-MDELTLRGITQYYA--FVEERQKVHCLNTLF- 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q++R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQNRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRYNLYKI 399

Query: 361 EK 362
           E+
Sbjct: 400 EQ 401


>gi|50659095|ref|NP_004719.2| nucleolar RNA helicase 2 [Homo sapiens]
 gi|76803555|sp|Q9NR30|DDX21_HUMAN RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
           protein 21; AltName: Full=Gu-alpha; AltName:
           Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
           RNA helicase II; AltName: Full=RH II/Gu
 gi|31455230|gb|AAH08071.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapiens]
 gi|55664208|emb|CAH72377.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapiens]
 gi|119574691|gb|EAW54306.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Homo
           sapiens]
 gi|261858100|dbj|BAI45572.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
          Length = 783

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 131/355 (36%), Positives = 201/355 (56%), Gaps = 21/355 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ KT   V    D+   A+TGTGKT SF +P++  
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247

Query: 63  LE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L    + R R R P+ L+L PTRELA QV+ +F    K   L+VA   GG P+  Q +++
Sbjct: 248 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 305

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   GKL +  ++ +V+DE D+MLDMGF   ++ I S V + + 
Sbjct: 306 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILS-VAYKKD 364

Query: 179 -----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSK 230
                QTLLFSAT    +  V++ ++++  +++++       TA T+EH  +A    +++
Sbjct: 365 SEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEH--LAIKCHWTQ 422

Query: 231 KCALLQQLLQSQDTMKN-GIIFCNQKKNVVNLCH-SLEKQGFSVCAIHGNIDQRSRMKIL 288
           + A++  +++     +   IIFC  KK    L   S  KQ     ++HG+I Q+ R   L
Sbjct: 423 RAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ--DAQSLHGDIPQKQREITL 480

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
             F+ G+  ++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 481 KGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTG 535


>gi|328462823|gb|EGF34690.1| putative RNA helicase [Lactobacillus helveticus MTCC 5463]
          Length = 453

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 201/365 (55%), Gaps = 11/365 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  + P +   +    + KPT +Q K IP +L    V   A TG+GKT ++++P+   
Sbjct: 5   FADSRIRPAIQEGLKKIHFEKPTKVQEKVIPAMLSDLRVVVQAATGSGKTHAYLVPIFNE 64

Query: 63  LEKGRARVRMPRTLILEPTRELA---AQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +++    V+   TL   P+RELA    QVA    +     + ++A L GG   E Q +K 
Sbjct: 65  IDEDAHYVQAIVTL---PSRELADQLYQVARQL-RDAAGMHFSIAHLAGGTDRERQLEKY 120

Query: 120 ERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +     ++I TPGR+LD   +  L+++ ++  VIDEAD  LDMGF+  I  + S +P   
Sbjct: 121 QNNTPQLVIATPGRLLDFVQKKVLVVDQVKTFVIDEADMTLDMGFLADIDQVASKMPKDV 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q   FSAT+  +L      ++ +P +I ++ PS  A TI++  +   ++ ++K  L + L
Sbjct: 181 QIAAFSATIPVKLSNFLRKYMAHPDQIVIDNPSVIAPTIKNDLLDIGSK-NRKSVLYKLL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q  +   ++F N K+ V  L   L+ QG  V  IHG + +R R + L   ++G  Q 
Sbjct: 240 TMGQPYL--ALVFANTKQTVDELTRYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQFQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARGLDI  V  V N+++P   E  IHRIGRTGR G  G A TL+ +E++  I+
Sbjct: 298 VVASDLAARGLDIDGVSLVINYEIPRDIEFVIHRIGRTGRNGLSGHAITLICEEEMNRIE 357

Query: 359 AIEKL 363
            +EK+
Sbjct: 358 DLEKM 362


>gi|303310497|ref|XP_003065260.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240104922|gb|EER23115.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 510

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 194/362 (53%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P  
Sbjct: 45  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIP-- 102

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE+   ++   + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 103 -TLERTNPKISKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLS 161

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 162 DTVHIIVGTPGRILDLASKGVADLSECTTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 221

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  ++NP  I +     T   I   +   + +  +K   L  L  
Sbjct: 222 MLFSATFPMIVKSFKDKHMRNPYEINL-MDELTLRGITQYYA--FVEERQKVHCLNTLF- 277

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q++R ++  +F+ G  + +V
Sbjct: 278 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQNRNRVFHDFRNGVCRNLV 337

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 338 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRYNLYKI 397

Query: 361 EK 362
           E+
Sbjct: 398 EQ 399


>gi|255635856|gb|ACU18275.1| unknown [Glycine max]
          Length = 413

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 197/379 (51%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDAMGLQDNLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     V   + L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 102 LDYS---VTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+   V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLDTLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D K +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDEKMLFD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     ++ L  +++ L
Sbjct: 394 IQKFYNVIIEELPSNVAEL 412


>gi|303288912|ref|XP_003063744.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454812|gb|EEH52117.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 577

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 136/398 (34%), Positives = 219/398 (55%), Gaps = 26/398 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L LS   +  +   GY   T +Q +TIP +L   DV G A+TG+GKT +F++P + +
Sbjct: 75  FASLSLSKPTMAGIATMGYETMTEVQARTIPPLLAGRDVLGAARTGSGKTLAFLVPSVEL 134

Query: 63  LEKGRARVRMPR----TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L   +    MPR     +IL PTRELA Q+ +  ++    ++ T  L+IGG    A+ +K
Sbjct: 135 LYHAKF---MPRNGAGVMILTPTRELALQIYNVTQQLMTKHSQTHGLIIGGANRRAEAEK 191

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G ++L+ TPGR+LDH    K    ++++I  +DEADRMLD+GF   ++ I  ++P  
Sbjct: 192 LVKGVNLLVATPGRLLDHMQNTKGFTFSSLKIFCMDEADRMLDIGFEEEMRTIVKMIPKD 251

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIE--HCFVATYAQYSKKCA 233
           RQT+LFSAT T +++ ++   L++P  I V+     STA  +E  +C V +     K+  
Sbjct: 252 RQTMLFSATQTTKVEDLARLSLKSPTYIGVDDARAVSTATGVEQGYCVVPS----EKRFL 307

Query: 234 LLQQLLQSQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
           LL   L+     K  + F  CN  K    L + ++     V  IHG   Q+ R      F
Sbjct: 308 LLFTFLKKNLKKKVMVFFSSCNSVKYHAELLNYID---IPVSDIHGKQKQQRRTTTFFEF 364

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLV 349
            +    +++ +D+AARGLDIPDV  +  FD P+  + YIHR+GRT R   GR G+A   +
Sbjct: 365 CKAERGVLLCTDVAARGLDIPDVDWIIQFDPPDDPKEYIHRVGRTARGTDGR-GRALLFL 423

Query: 350 AKEDIKHIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
             E++  +  ++  K+   + ++ N  ++++   LEK+
Sbjct: 424 IPEELAFLKYLKAAKVPLNEYEFPNKKIANVQSQLEKL 461


>gi|302839493|ref|XP_002951303.1| hypothetical protein VOLCADRAFT_120953 [Volvox carteri f.
           nagariensis]
 gi|300263278|gb|EFJ47479.1| hypothetical protein VOLCADRAFT_120953 [Volvox carteri f.
           nagariensis]
          Length = 414

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 198/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+ KP+ IQ K I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 43  FDQMNLHENLLRGIYAYGFEKPSAIQAKGIVPFTKGLDVIQQAQSGTGKTATFCAGILNN 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     +   + L+L PTRELA Q+       G    +     +GG       + L  G
Sbjct: 103 LDYN---LNECQALVLAPTRELAQQIEKVMRALGDFLQVKCHACVGGTSVREDARILGAG 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 160 VQVVVGTPGRVFDMLRRRYLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKLQVGV 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSAT+  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 220 FSATLPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVDVDKEEWKLDTLCDLYETLA 279

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   + ++  +V A HG+++Q +R  I+  F+ G+ +++
Sbjct: 280 ITQ-----SVIFANTRRKVDWLTEKMRERDHTVSATHGDMEQNARDVIMREFRSGSSRVL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   + KED + +  
Sbjct: 335 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFIVKEDERMLQD 394

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     V+ L  +++ L
Sbjct: 395 IQRFYNTVVEELPSNVADL 413


>gi|332834196|ref|XP_003312635.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Pan troglodytes]
          Length = 715

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 131/355 (36%), Positives = 201/355 (56%), Gaps = 21/355 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ KT   V    D+   A+TGTGKT SF +P++  
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179

Query: 63  LE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L    + R R R P+ L+L PTRELA QV+ +F    K   L+VA   GG P+  Q +++
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 237

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   GKL +  ++ +V+DE D+MLDMGF   ++ I S V + + 
Sbjct: 238 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILS-VAYKKD 296

Query: 179 -----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSK 230
                QTLLFSAT    +  V++ ++++  +++++       TA T+EH  +A    +++
Sbjct: 297 SEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEH--LAIKCHWTQ 354

Query: 231 KCALLQQLLQSQDTMKN-GIIFCNQKKNVVNLCH-SLEKQGFSVCAIHGNIDQRSRMKIL 288
           + A++  +++     +   IIFC  KK    L   S  KQ     ++HG+I Q+ R   L
Sbjct: 355 RAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ--DAQSLHGDIPQKQREITL 412

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
             F+ G+  ++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 413 KGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTG 467


>gi|239613981|gb|EEQ90968.1| ATP-dependent RNA helicase DBP4 [Ajellomyces dermatitidis ER-3]
 gi|327353332|gb|EGE82189.1| ATP-dependent RNA helicase DBP4 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 810

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 132/392 (33%), Positives = 215/392 (54%), Gaps = 26/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL LS   +  +  + +   T IQ K IP  L+  D+ G A+TG+GKT +F++P+L +
Sbjct: 51  FSDLPLSEPTLNGLSASHFKSLTDIQAKAIPHALKGRDILGAAKTGSGKTLAFLVPLLEL 110

Query: 63  L-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  K          L+L PTRELA Q+ +   K G+++  +  L+IGG   + + ++L R
Sbjct: 111 LYRKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHTFSAGLVIGGKSLQEEQERLGR 170

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++      N+I++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 171 -MNILVCTPGRMLQHMDQTAAFDTNHIQLLVLDEADRIMDMGFQSTVDAIIDHLPKERQT 229

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVN--TPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +LFSAT T ++  ++   L+NP+ I V+    S+T   ++  ++ T     +K   L   
Sbjct: 230 MLFSATQTKKVSDLARLSLRNPEYISVHETAASATPAKLQQNYIVT--PLPEKLDTLWSF 287

Query: 239 LQSQDTMKNGI-IFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++S  ++K+ I +F +  K V  +  S    + G S+  +HG   Q +R+ I   F    
Sbjct: 288 IRS--SLKSKIMVFFSSGKQVRFVYESFRHMQPGISLLHLHGRQKQGARVDITKKFSAAK 345

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
              + ++D+AARGLD P V  V   D P  A+ YIHR GRT R  R+G+A   +  E  +
Sbjct: 346 HACLFSTDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFL--EPSE 403

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
               +++L +KK+            P+EKI+I
Sbjct: 404 EAGMLKRLEQKKI------------PIEKINI 423


>gi|51476855|emb|CAH18395.1| hypothetical protein [Homo sapiens]
 gi|119574692|gb|EAW54307.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_c [Homo
           sapiens]
 gi|123993911|gb|ABM84557.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
 gi|124000685|gb|ABM87851.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
 gi|189054973|dbj|BAG37957.1| unnamed protein product [Homo sapiens]
          Length = 715

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 131/355 (36%), Positives = 201/355 (56%), Gaps = 21/355 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ KT   V    D+   A+TGTGKT SF +P++  
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179

Query: 63  LE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L    + R R R P+ L+L PTRELA QV+ +F    K   L+VA   GG P+  Q +++
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 237

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   GKL +  ++ +V+DE D+MLDMGF   ++ I S V + + 
Sbjct: 238 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILS-VAYKKD 296

Query: 179 -----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSK 230
                QTLLFSAT    +  V++ ++++  +++++       TA T+EH  +A    +++
Sbjct: 297 SEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEH--LAIKCHWTQ 354

Query: 231 KCALLQQLLQSQDTMKN-GIIFCNQKKNVVNLCH-SLEKQGFSVCAIHGNIDQRSRMKIL 288
           + A++  +++     +   IIFC  KK    L   S  KQ     ++HG+I Q+ R   L
Sbjct: 355 RAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ--DAQSLHGDIPQKQREITL 412

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
             F+ G+  ++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 413 KGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTG 467


>gi|327462431|gb|EGF08756.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK1057]
          Length = 447

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 137/375 (36%), Positives = 196/375 (52%), Gaps = 27/375 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  + + TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFFEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQV-------ADNFEK--YGKNYNLTVALLIGGIP 111
            +L++    V+    +I  P+RELAAQ+       A   EK   G NY       +GG  
Sbjct: 61  QMLDEEADSVQ---AVITAPSRELAAQIYQAARQLASFSEKEIRGANY-------VGGTD 110

Query: 112 FEAQNKKLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              Q  KLE     ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I
Sbjct: 111 KARQIGKLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKI 170

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
              +P   Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TIE+  ++T  +  K
Sbjct: 171 AGRLPKDLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGR-DK 229

Query: 231 KCALLQ--QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
              + Q  QLLQ    M    IF N K     L   L  QG  V  IHG+I  R R +I+
Sbjct: 230 NAQIYQISQLLQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIM 285

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +  K    + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL
Sbjct: 286 NQVKNLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITL 345

Query: 349 VAKEDIKHIDAIEKL 363
               D   I  +EK+
Sbjct: 346 YQPSDDSDIRELEKM 360


>gi|167385227|ref|XP_001737255.1| ATP-dependent RNA helicase DDX55 [Entamoeba dispar SAW760]
 gi|165899983|gb|EDR26453.1| ATP-dependent RNA helicase DDX55, putative [Entamoeba dispar
           SAW760]
          Length = 499

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 127/384 (33%), Positives = 220/384 (57%), Gaps = 29/384 (7%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
            L  + +  + + G++KPT +Q   IP  L R DV   +QTG+GKT SF++P+  I+++ 
Sbjct: 11  SLRKETIDTIKEFGFIKPTEVQKVVIPAFLNRKDVIVQSQTGSGKTLSFLIPLFEIIKRE 70

Query: 67  RARVRMPRT--LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           R  +       +I+ PTRELA Q+ D  + + K++N+T+ LL GGI      +++++GA+
Sbjct: 71  REIIEKKEVYGIIISPTRELAHQIYDITKVFCKHFNMTIGLLTGGIDISKLEEEMKKGAN 130

Query: 125 VLICTPGRILDHFNRG--KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           +++ T GRI +       +L  NN+E+L++DE D+M++MGF   I +I   +P  R+T L
Sbjct: 131 IIVGTAGRIEEVITNKLFELEWNNVEVLILDEGDKMIEMGFSQSITHIICHLPKQRRTGL 190

Query: 183 FSATMTDELQKVSENFLQNPKRIEVN----TPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           FSATM  EL K      +NP +I+++    TP S A   E+C +     Y  K   L ++
Sbjct: 191 FSATMPKELNKFIIAGCRNPYKIQISNDTLTPISLAN--EYCIIP----YEIKIQTLIRI 244

Query: 239 LQ-SQDTMKNGIIF---CNQKKNVVNLCHSL-EKQGF----SVCAIHGNIDQRSRMKILS 289
           L+ S+D  K  +IF   C+Q   + N+   L +++G+     + +IHG + Q +R K++ 
Sbjct: 245 LKDSKD--KKIVIFVLTCDQVNYIYNIIKILHQEEGYLKEKEIFSIHGKVKQINRDKVIK 302

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+E    +++ +D+ ARG+D  ++ ++  +D P   + YIHR+GRT R G  G +   +
Sbjct: 303 KFEESLEAILICTDILARGMDFNNINYIIQYDPPQDPKTYIHRVGRTARMGSIGHSLIFL 362

Query: 350 AKEDIKHIDAIE----KLIEKKVD 369
           +  +   I  +E    K+IEKK++
Sbjct: 363 SPLEKSFILLMEKKNVKIIEKKIE 386


>gi|71999646|ref|NP_741347.2| hypothetical protein Y94H6A.5 [Caenorhabditis elegans]
 gi|51536860|gb|AAU05556.1| Hypothetical protein Y94H6A.5b [Caenorhabditis elegans]
          Length = 871

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 117/355 (32%), Positives = 190/355 (53%), Gaps = 3/355 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +  +GL   V  A+   G+ +PTPIQ KTIP ++   DV  +++TG+GKTA+FV+PML  
Sbjct: 26  WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  R      R L++ PTRELA Q     ++ G+   L  A L+GG   E Q   +   
Sbjct: 86  LK--RRDTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHEN 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+L       L ++ ++ +V DEADR+ +MGF   +      +P +RQTLL
Sbjct: 144 PDILLATPGRLLHVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIPESRQTLL 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L   ++  L +P  + ++     ++ +   F        K  ALL    +  
Sbjct: 204 FSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPD-EKLFALLHLCRRMD 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  ++FC   K+V  +   L + G     ++  +D  +R   +  F E    ++V +
Sbjct: 263 RENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKMNIQKFHEKQNNILVVT 322

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           D+AARG+DIP +  V N   P +A+ ++HR+GR  RAGR G A +L+A +++ ++
Sbjct: 323 DVAARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSGTAISLIANDELPYL 377


>gi|312376779|gb|EFR23772.1| hypothetical protein AND_12284 [Anopheles darlingi]
          Length = 1243

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 125/382 (32%), Positives = 205/382 (53%), Gaps = 17/382 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F + G    ++  +   G+++PT IQ     + +   D+ GIA+TG+GKT +++LP L
Sbjct: 80  LHFQESGFPQFMLDEIARQGFLEPTFIQAVGWSIAMSGRDMVGIAKTGSGKTLAYILPAL 139

Query: 61  T-ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             I  + R AR   P  L+L PTRELA Q+    + +G+   +    + GG     Q   
Sbjct: 140 VHISNQPRLARGDGPIALVLAPTRELAQQIKQVSDDFGRRMGVHNTCVFGGAAKYPQEND 199

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG +++I TPGR++D   R    +     LV+DEADRMLDMGF P I+ I S +   R
Sbjct: 200 LRRGVEIVIATPGRLIDFLERETTNLRRCTYLVLDEADRMLDMGFEPQIRKIISQIRPDR 259

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCA 233
           Q L++SAT   E++K++E FL++  +I + + +  A     + IE C    Y + ++   
Sbjct: 260 QVLMWSATWPKEIRKLAEEFLRDYIQINIGSLNLAANENILQVIECC--EEYEKENRLFM 317

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL+++    D     IIF   K+ V  + + + +QG+    IHG+  Q+ R  +L+NF+ 
Sbjct: 318 LLEKISSQPDN--KAIIFVETKRKVDKIVNIIRRQGWRADGIHGDKSQKDRDYVLNNFRR 375

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
               L+VA+D++       DV  V NFD PN  E+Y+HRIGRTGR+   G ++T     +
Sbjct: 376 SPNGLLVATDMST------DVKFVINFDFPNNTEDYVHRIGRTGRSTNKGTSYTFFTPAN 429

Query: 354 IKHIDAIEKLIEKKVDWLNGDL 375
                 +  +++    ++N +L
Sbjct: 430 ASKASDLIAVLQDANQYINPEL 451


>gi|227514534|ref|ZP_03944583.1| ATP-dependent RNA helicase [Lactobacillus fermentum ATCC 14931]
 gi|227087091|gb|EEI22403.1| ATP-dependent RNA helicase [Lactobacillus fermentum ATCC 14931]
          Length = 460

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 210/379 (55%), Gaps = 14/379 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L+  +  A+ D  + +PT +Q + IPL+L    V G ++TG+GKT +F+LP+ + 
Sbjct: 5   FADLHLADFLTPALKDLHFERPTAVQARVIPLILNGKSVVGQSRTGSGKTHAFLLPIFSQ 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKL- 119
           L      V+    +I  P+RELA Q+ +  ++  +     LT+   +GG   E Q ++L 
Sbjct: 65  LAPNNQTVQ---AVITTPSRELAYQIYNAAKQLNRFATTPLTIHNYVGGTDKEHQVEQLN 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R   ++I TPGRILD  N   L ++     VIDEAD  LDMGF+  +  I +  P   Q
Sbjct: 122 RRQPQLVIGTPGRILDLINSQALDIHTASQFVIDEADMTLDMGFLETVDQIAARFPEKLQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++FSAT+   L+   + +L+NP   E+ T +     +E+  ++T  +   K  L+ +LL
Sbjct: 182 MMVFSATIPQGLRPFLKKYLENPVIEEIPTETVINPNVENWLMSTKGR--DKNDLVYRLL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     ++F N +     L + L+++G  V  IHG ++ R+R + +   ++   Q +
Sbjct: 240 TLGDPYL-ALVFANTRDRATELANYLQERGLKVALIHGGLEPRARKRTMRQIRDMDYQYI 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           VA+DLAARG+D+  V  V N D+P+  E ++HR+GRTGRA   G A TL A  ED+    
Sbjct: 299 VATDLAARGIDLEGVSLVLNDDIPSDLEYFVHRVGRTGRANMAGTAITLYAPAEDV---- 354

Query: 359 AIEKLIEKKVDWLNGDLSS 377
            IEKL E+ + ++  DL +
Sbjct: 355 LIEKLEERGITFIPKDLKN 373


>gi|229543833|ref|ZP_04432892.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
 gi|229324972|gb|EEN90648.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
          Length = 436

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 125/364 (34%), Positives = 193/364 (53%), Gaps = 9/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D G    +  A+   G+ +PT IQ K IPLVL+     G +QTGTGKT ++VLP+L  
Sbjct: 6   WEDFGFKSFIEKAIEHKGFAEPTEIQRKMIPLVLRGESAIGQSQTGTGKTHAYVLPLLQK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFE---KYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   A V+    +I  PTRELAAQ+    +   K+ +   LT  L IGG   +    KL
Sbjct: 66  ADPSLAEVQ---AVITAPTRELAAQIYHEIQEILKWEETGRLTAKLFIGGTDKQRDISKL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   +++ TPGR+ D      L ++  +  V+DEAD MLDMGFI  +  I   +    Q
Sbjct: 123 KKQPQIVVGTPGRVNDLVKEQALFVHTAKTFVVDEADIMLDMGFIVDVDQIAGRMSEKLQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+ ++L+   + +++NPK  +V      A+ IEH  +   A+  +K  +L  +L
Sbjct: 183 MLVFSATIPEKLKPFLKKYMENPKFEQVAPRQIAAKKIEHILIPKRAR--EKMDVLHDVL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++ +     I+F N K  V  +   L  +G     IHG++  R R K +   K    + +
Sbjct: 241 EAFNPY-LAIVFANTKAMVDEIAAGLSAKGMKTARIHGDLSPRERAKTMKQIKNLEYRYI 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+DLAARG+DI  V HV N+++P     Y+HR GRT RA   G   T+    D   +  
Sbjct: 300 IATDLAARGIDIEGVSHVVNYELPKDLTFYVHRAGRTARADLSGICATIYEPSDEFALTQ 359

Query: 360 IEKL 363
           +EK+
Sbjct: 360 LEKM 363


>gi|226294425|gb|EEH49845.1| ATP-dependent RNA helicase DHH1 [Paracoccidioides brasiliensis
           Pb18]
          Length = 577

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 192/362 (53%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 109 LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 168

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E+   +    + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 169 ---ERTNPKNSKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLN 225

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 226 EAVHIIVGTPGRILDLASKGVADLSECSTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQI 285

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  ++NP  I +     T   I   +   + +  +K   L  L  
Sbjct: 286 MLFSATFPLIVKSFKDKHMRNPYEINL-MDELTLRGITQYYA--FVEEKQKVHCLNTLF- 341

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 342 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQHNRNRVFHDFRNGVCRNLV 401

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 402 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRYNLYKI 461

Query: 361 EK 362
           E+
Sbjct: 462 EQ 463


>gi|146414812|ref|XP_001483376.1| hypothetical protein PGUG_04105 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 754

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 124/356 (34%), Positives = 194/356 (54%), Gaps = 13/356 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  L +S      +L+  +V  T IQ K IP+ L+  DV G A+TG+GKT +F++P++  
Sbjct: 48  FKHLPISEGTYKGLLENNFVSLTDIQKKAIPVALKSEDVMGTARTGSGKTLAFLVPVIEK 107

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++ +          LI+ PTRELA Q  +   K GK  + +  L+ GG   + + +++ R
Sbjct: 108 LIRENITEYDGLAALIVSPTRELAVQTFEVLTKIGKYNSFSAGLVTGGKDVKYEKERISR 167

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++LI TPGRI  H N    +  +N+++LV+DEADR LDMGF   I NI   +P TRQT
Sbjct: 168 -MNILIGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFRKQIDNILGHLPVTRQT 226

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTP---SSTAETIEHCFVATYAQYSKKCALLQQ 237
           LLFSAT +D ++ ++   L NPKR+ V++    SS  E++E  ++      + K  +L  
Sbjct: 227 LLFSATQSDNVKDLARLSLVNPKRVGVSSDQEVSSIPESLEQYYIKI--SLASKMDVLWS 284

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ---GFSVCAIHGNIDQRSRMKILSNFKEG 294
            L+S    K  + F + K+  V   +   ++   G S+  ++G   Q SR++    F   
Sbjct: 285 FLKSHLKSKILVFFSSSKQ--VQFAYEAFRRLQPGISLLKLYGRHKQTSRLETTMKFSRA 342

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
               + A+D+ ARGLD P +  V   D P  A  Y+HR+GR  R GR GK+  ++A
Sbjct: 343 QHACLFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGRAARFGRQGKSLLMLA 398


>gi|331224777|ref|XP_003325060.1| eukaryotic initiation factor 4A-II [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309304050|gb|EFP80641.1| eukaryotic initiation factor 4A-II [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 405

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 128/368 (34%), Positives = 204/368 (55%), Gaps = 5/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  + L  +++  +   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F    ++
Sbjct: 33  NFDAMELKGELLRGIYAYGFERPSAIQQRAIIPVIKGHDVIAQAQSGTGKTATF---SIS 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL+     ++  + L+L PTRELA Q+       G   N+     +GG        KL+ 
Sbjct: 90  ILQSIDVNIKACQALVLAPTRELAQQIQKVLVALGDYLNIECYAAVGGTSVRDGMAKLQE 149

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  ++I+I  +DEAD ML  GF   I ++  L+P T Q +
Sbjct: 150 GVHVIVGTPGRVFDMIQRRALKTDHIKIFTLDEADEMLSRGFKDQIYDVFQLLPPTTQVV 209

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K   L    L  
Sbjct: 210 LLSATMPQDVLEVTSKFMRDPIRILVKRDELTLEGIKQFYIAVEKEDWKLDTLCD--LYE 267

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V ++HG+++Q  R  I+  F+ G+ ++++ 
Sbjct: 268 TVTITQAVIFCNTRRKVDWLQEKLTGREFTVSSMHGDMEQGQREVIMKEFRSGSSRVLIT 327

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   VA ED+  +  +E
Sbjct: 328 TDLLARGIDVQQVSLVINYDLPVSKENYIHRIGRGGRFGRKGVAINFVATEDVPALRELE 387

Query: 362 KLIEKKVD 369
           +    ++D
Sbjct: 388 RFYNTQID 395


>gi|238484739|ref|XP_002373608.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           flavus NRRL3357]
 gi|220701658|gb|EED57996.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           flavus NRRL3357]
          Length = 439

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 130/367 (35%), Positives = 207/367 (56%), Gaps = 5/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P+++  V   G+ +P+ IQ + I  +++  DV   AQ+GTGKTA+F    ++ 
Sbjct: 26  FDAMELKPELLRGVYAYGFERPSAIQQRAIKPIIKGSDVIAQAQSGTGKTATF---SISA 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    V+  + LIL PTRELA Q+       G   N+T    IGG       K L  G
Sbjct: 83  LQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNITCHACIGGTAVREDMKALGEG 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +V++ TPGR+ D   R  L  ++++  ++DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 143 PEVVVGTPGRVHDMIQRRVLKTDHLKQFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 203 LSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 261

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A+
Sbjct: 262 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIAT 320

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 321 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 380

Query: 363 LIEKKVD 369
               +++
Sbjct: 381 FYSTQIE 387


>gi|1230564|gb|AAB02546.1| Gu protein [Homo sapiens]
          Length = 801

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 131/355 (36%), Positives = 201/355 (56%), Gaps = 21/355 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ KT   V    D+   A+TGTGKT SF +P++  
Sbjct: 206 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 265

Query: 63  LE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L    + R R R P+ L+L PTRELA QV+ +F    K   L+VA   GG P+  Q +++
Sbjct: 266 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 323

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   GKL +  ++ +V+DE D+MLDMGF   ++ I S V + + 
Sbjct: 324 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILS-VAYKKD 382

Query: 179 -----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSK 230
                QTLLFSAT    +  V++ ++++  +++++       TA T+EH  +A    +++
Sbjct: 383 SEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEH--LAIKCHWTQ 440

Query: 231 KCALLQQLLQSQDTMKN-GIIFCNQKKNVVNLCH-SLEKQGFSVCAIHGNIDQRSRMKIL 288
           + A++  +++     +   IIFC  KK    L   S  KQ     ++HG+I Q+ R   L
Sbjct: 441 RAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ--DAQSLHGDIPQKQREITL 498

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
             F+ G+  ++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 499 KGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTG 553


>gi|255956657|ref|XP_002569081.1| Pc21g20950 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590792|emb|CAP96992.1| Pc21g20950 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 805

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 145/458 (31%), Positives = 234/458 (51%), Gaps = 32/458 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
           +F+DL LS      +  + +   T IQ + I    +  D+ G A+TG+GKT +F++P+L 
Sbjct: 47  NFSDLPLSEPTAKGLAASHFKTLTDIQSRAINHAFKGRDILGAAKTGSGKTLAFLVPILE 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  K    +     L+L PTRELA Q+ +   K G+ +N +  L+IGG     +  +L 
Sbjct: 107 NLYRKKWTELDGLGALVLSPTRELAIQIFEVLRKIGRYHNFSAGLIIGGKSLREEQDRLG 166

Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           R  ++LICTPGR+L H ++  +   NN+++LV+DEADR++DMGF   +  I   +P  RQ
Sbjct: 167 R-MNILICTPGRMLQHLDQTAMFETNNLQMLVLDEADRIMDMGFQKTVDAIIDHLPKQRQ 225

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVN--TPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           T+LFSAT T ++  ++   LQ P+ + V+    S+T  T++  +  T     +K   L  
Sbjct: 226 TMLFSATQTKKVGDLARLSLQEPEYVSVHEAAASATPSTLQQHYTIT--PLPQKLDTLWS 283

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEK--QGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            ++S    K  ++F +  K V  +  SL +   G S+  +HG   Q  R+ I + F +  
Sbjct: 284 FIRSNLKSKT-VVFLSSGKQVRYVYESLRQLQPGISLLHLHGRQKQGGRLDITTKFSQAQ 342

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++ A+D+ ARGLD P V  V   D P  A+ YIHR+GRT R  R G+A   +   + K
Sbjct: 343 HAVLFATDVVARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERVGRAVLFLDPSEEK 402

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
               +++L  KKV            P+EKI+I  +      N +  ++  F   +  Y  
Sbjct: 403 GF--LKQLEHKKV------------PIEKINIKSNKQQSVKNQL--QNMCFKDPELKYLG 446

Query: 416 QKSHIPLKESEKISKLQQDIQ------ENDADSLGFRG 447
           QK+ I   +S  + K ++  +      E  A SLG  G
Sbjct: 447 QKAFISYVKSIYVQKDKETFKIKELPLEEYAASLGLPG 484


>gi|255732942|ref|XP_002551394.1| hypothetical protein CTRG_05692 [Candida tropicalis MYA-3404]
 gi|240131135|gb|EER30696.1| hypothetical protein CTRG_05692 [Candida tropicalis MYA-3404]
          Length = 880

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 132/396 (33%), Positives = 214/396 (54%), Gaps = 19/396 (4%)

Query: 1   MDFADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           + +  L L   +   + D   + KP+ IQ + +P +L   DV GIA+TG+GKT S+VLPM
Sbjct: 288 LKWGHLSLPSNISSVIHDKLKFEKPSSIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPM 347

Query: 60  LTILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQN 116
           +  ++  R       P  LIL PTRELA Q+      + K N NL V    GG   E+Q 
Sbjct: 348 IRHIQDQRKLESNEGPIGLILSPTRELALQIQKEILHFTKDNPNLRVCCCYGGASIESQI 407

Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L++G ++++ TPGR++D    N G++  +     +V+DEADRM D+GF P +  I + 
Sbjct: 408 NELKKGVEIVVATPGRMIDLLAANSGRVTNLKRTTYVVLDEADRMFDLGFEPQVTKIFTQ 467

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-----ATYAQY 228
           +   +QT+LFSAT   +++ +++  L NP  I V   S  A  I+   V     +     
Sbjct: 468 IRPDKQTVLFSATFPKKMEVLAKKILVNPVVIIVGGISVVASEIKQKVVLFNHTSDDIYK 527

Query: 229 SKKCALLQQLLQSQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
           +++   L ++L S+  M N     ++F  ++ +   L   L + G+   A+HG  DQ  R
Sbjct: 528 TERMNKLYEVL-SEYQMFNPKSKILVFVEKQSDADELVTDLLRSGYPSVALHGGKDQMDR 586

Query: 285 MKILSNFK--EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
              +  F   +  + ++VA+ +AARGLD+  +G V NFD PN  E+Y+HR+GRTGRAG  
Sbjct: 587 KYAIKEFSSNDSGLNILVATSVAARGLDVKSLGLVINFDPPNHMEDYVHRVGRTGRAGSK 646

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G+A T V     + I ++ K +      ++ DL+++
Sbjct: 647 GQAITFVCSNQEREITSLVKALRLSKAEVDPDLAAI 682


>gi|223590191|sp|A5DLF4|DBP4_PICGU RecName: Full=ATP-dependent RNA helicase DBP4
 gi|190347685|gb|EDK40007.2| hypothetical protein PGUG_04105 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 754

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 124/356 (34%), Positives = 194/356 (54%), Gaps = 13/356 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  L +S      +L+  +V  T IQ K IP+ L+  DV G A+TG+GKT +F++P++  
Sbjct: 48  FKHLPISEGTYKGLLENNFVSLTDIQKKAIPVALKSEDVMGTARTGSGKTLAFLVPVIEK 107

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++ +          LI+ PTRELA Q  +   K GK  + +  L+ GG   + + +++ R
Sbjct: 108 LIRENITEYDGLAALIVSPTRELAVQTFEVLTKIGKYNSFSAGLVTGGKDVKYEKERISR 167

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++LI TPGRI  H N    +  +N+++LV+DEADR LDMGF   I NI   +P TRQT
Sbjct: 168 -MNILIGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFRKQIDNILGHLPVTRQT 226

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTP---SSTAETIEHCFVATYAQYSKKCALLQQ 237
           LLFSAT +D ++ ++   L NPKR+ V++    SS  E++E  ++      + K  +L  
Sbjct: 227 LLFSATQSDNVKDLARLSLVNPKRVGVSSDQEVSSIPESLEQYYIKI--SLASKMDVLWS 284

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ---GFSVCAIHGNIDQRSRMKILSNFKEG 294
            L+S    K  + F + K+  V   +   ++   G S+  ++G   Q SR++    F   
Sbjct: 285 FLKSHLKSKILVFFSSSKQ--VQFAYEAFRRLQPGISLLKLYGRHKQTSRLETTMKFSRA 342

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
               + A+D+ ARGLD P +  V   D P  A  Y+HR+GR  R GR GK+  ++A
Sbjct: 343 QHACLFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGRAARFGRQGKSLLMLA 398


>gi|42522889|ref|NP_968269.1| RNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39574085|emb|CAE79262.1| RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 460

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 191/365 (52%), Gaps = 9/365 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  L P ++  +      KPT IQ + IPL++    V G+++TG+GKT ++VLP+L  
Sbjct: 56  FADFELLPSLLKTLKTLKISKPTDIQKQAIPLIMSHQAVVGVSETGSGKTLAYVLPILNY 115

Query: 63  L---EKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           L   E+    V+    PR +++ P+REL  QVA  F+    +  L V   +GG+  E   
Sbjct: 116 LKSLEESGDPVKEENAPRAVVMVPSRELGEQVAKVFKSMTHDTRLRVRPALGGMSLEQAR 175

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +      +VL+ TPGR++   N+  + + ++  L+ DEAD+MLD GF+P    I    P 
Sbjct: 176 RNTSGAFEVLLATPGRLVQMLNKDLISLRDVRFLIFDEADQMLDQGFLPDTNRIVDCCPE 235

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
                LFSAT++  ++K+  +     + I          T++   +    +  K+  L +
Sbjct: 236 DVNLALFSATVSKTVEKLMNDLFAKAEVIRSKNSGKVVSTLKTKNLTV--EDGKRWPLFE 293

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L +Q      I+F N ++    +   L  +G +     G +D+  R   L  F++G +
Sbjct: 294 KVL-AQKVDGGTIVFANTREQCDKIAKELTDKGHACVVYRGEMDKNERRTNLKKFRDGQV 352

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+VA+DLA RGLD+ ++  V N+ +P   ENY+HR GRT RAGR G    LV + D + 
Sbjct: 353 GLLVATDLAGRGLDVSNIARVINYHLPKEMENYLHRAGRTARAGRPGLVVNLVTERDSRL 412

Query: 357 IDAIE 361
           I A+E
Sbjct: 413 IAALE 417


>gi|254486145|ref|ZP_05099350.1| ATP-dependent rna helicase, dead/deah box family [Roseobacter sp.
           GAI101]
 gi|214043014|gb|EEB83652.1| ATP-dependent rna helicase, dead/deah box family [Roseobacter sp.
           GAI101]
          Length = 717

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 126/402 (31%), Positives = 209/402 (51%), Gaps = 16/402 (3%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF---VLPMLTILEKGRA 68
           +  A+   GY   TP+Q       L   D+   AQTG+GKT  F   + P L    +   
Sbjct: 5   IADALAKQGYDSLTPVQEAVTDPALADADLLVSAQTGSGKTVGFGLAIAPTLLGESETFG 64

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
               P  L++ PTRELA QV+             V   +GG+    + + L+RGA V++ 
Sbjct: 65  HAGAPLALVIAPTRELAMQVSRELTWLYGPAGAVVTTCVGGMDTRTERRALDRGAHVVVA 124

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR+ DH  R  + +N+I  +V+DEAD MLD+GF   ++ I S  P  R+TLLFSAT+ 
Sbjct: 125 TPGRLCDHIKRNNINLNDIRAVVLDEADEMLDLGFREELEFILSEAPEDRRTLLFSATVP 184

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
             + K+++++ +N +R+E    +     IE+  +  + + ++  A++  L   +   KN 
Sbjct: 185 AAIAKLAKSYQRNAQRVETIGEAKQHTDIEYRALTVHPRDTEN-AIINVLRFYE--AKNA 241

Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           I+FCN +  V  L      +GFSV A+ G + Q  R   L   ++G  ++ +A+D+AARG
Sbjct: 242 IVFCNTRAAVARLTTRFTNRGFSVVALSGELSQSERTNALQALRDGRARVCIATDVAARG 301

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           +D+P++  V + D+P+ ++  +HR GRTGRAGR G +  +V  +     + +    + KV
Sbjct: 302 IDLPNLELVIHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPAKLRSKANRLIGGAKLKV 361

Query: 369 DWLNGDLSSLNPPLEKIDIAQHNH----ARKNNPIPQKSTGF 406
           +W N       P  E+++          +  ++PIP  + GF
Sbjct: 362 EWAN------PPSAEEVNAEDEKRLLADSAWSDPIPDDAKGF 397


>gi|227363253|ref|ZP_03847385.1| ATP-dependent RNA helicase [Lactobacillus reuteri MM2-3]
 gi|325682139|ref|ZP_08161657.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           reuteri MM4-1A]
 gi|227071709|gb|EEI10000.1| ATP-dependent RNA helicase [Lactobacillus reuteri MM2-3]
 gi|324978783|gb|EGC15732.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           reuteri MM4-1A]
          Length = 467

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 130/380 (34%), Positives = 206/380 (54%), Gaps = 16/380 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  L P ++ A+    + +PTP+Q + IP+++    V G + TG+GKT +F+LP   I
Sbjct: 16  FADFQLQPYLLTAIQKINFRQPTPVQQRVIPVIMAGRSVVGQSATGSGKTHAFLLP---I 72

Query: 63  LEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             K +   +  + +I  P+RELA Q+   A    KY   + LT+   +GG   + Q  +L
Sbjct: 73  FSKIKPEDQTVQAVITTPSRELAYQIYNAAKQLNKYAP-HPLTIHNYVGGTDKQHQVDQL 131

Query: 120 ERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            R    ++I TPGR+LD      L ++  ++ V+DEAD  LDMGF+  +  I S  P   
Sbjct: 132 SRKQPQLVIGTPGRVLDLIKSQALDIHTAKMFVVDEADMTLDMGFLHEVDQIASHFPNDL 191

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT+  +L+   + +++NP   E+ T +     +++  ++T  Q   +  L+ +L
Sbjct: 192 QMMVFSATIPQKLRPFLKKYMENPVVEEIPTEAVINPDVDNWLMSTKGQ--DRNQLIYRL 249

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   +     ++F N K+  V L   LE QG  V  IHG ++ R R + +   ++   Q 
Sbjct: 250 LTLGEPYL-ALVFANTKERAVKLTQYLENQGLKVAMIHGGLEARRRKRTMRQIRDLEYQY 308

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHI 357
           +VA+DLAARG+DI  V  V N D+P   E ++HR+GRTGR G  G A TL    ED    
Sbjct: 309 VVATDLAARGIDIDGVSLVINDDLPTDLEYFVHRVGRTGRNGMKGTAITLYEPAED---- 364

Query: 358 DAIEKLIEKKVDWLNGDLSS 377
           D I KL E+ V ++  +L +
Sbjct: 365 DLIAKLEERGVKFVPKELKN 384


>gi|289621395|emb|CBI52178.1| unnamed protein product [Sordaria macrospora]
          Length = 372

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 129/359 (35%), Positives = 205/359 (57%), Gaps = 5/359 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F    +++L+K    ++  + LIL 
Sbjct: 18  GFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATF---SISVLQKIDPTLKACQALILA 74

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA Q+       G   N+     IGG       K L+ G  V++ TPGR+ D   R
Sbjct: 75  PTRELAQQIQKVVVAIGDFMNIECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQR 134

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
             L  +++++ V+DEAD ML  GF   I +I  L+P + Q +L SATM  ++ +V+  F+
Sbjct: 135 RFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFM 194

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
           + P RI V     T E I+  ++A   +   K   L  L ++  T+   +IFCN ++ V 
Sbjct: 195 REPVRILVKKDELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV-TITQAVIFCNTRRKVD 252

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A+DL ARG+D+  V  V N
Sbjct: 253 WLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVIN 312

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           +D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+    +++ +  +++ L
Sbjct: 313 YDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADL 371


>gi|242242830|ref|ZP_04797275.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144]
 gi|242233731|gb|EES36043.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144]
          Length = 448

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 133/384 (34%), Positives = 205/384 (53%), Gaps = 18/384 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV +  + KPT IQ + IP +L+  ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEHFNLDENLIEAVKNLNFEKPTEIQNRIIPRILKGTNLIGQSQTGTGKSHAFLLPLIQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQ---VADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +E   + ++ P+ +++ PTRELA Q   VA +  K+ K  N  V L IGG   E   ++ 
Sbjct: 66  IE---SDIQEPQAIVVAPTRELAQQLYQVAMHLVKFKKGIN--VKLFIGGTDLEKDKQRC 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++I TP RI D  + G L  +    L+IDEAD M+D+G I  + +I + +     
Sbjct: 121 NHQPQLIIGTPTRINDLAHSGYLHAHLASYLIIDEADLMIDLGLIEDVDHIAARLDNENA 180

Query: 180 TL-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            L +FSAT+   LQ     +L  P+ + V+  +   E IE   + T     K  A + + 
Sbjct: 181 HLAVFSATIPKSLQPFLNKYLSQPEFVVVDGKAHNKENIEFYLIPT-----KGSAKVDKT 235

Query: 239 LQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+  D +     IIFCN ++N   L  +L K+G  +  IHG +  R R + +   +    
Sbjct: 236 LELIDILNPYLCIIFCNSRENADELADTLNKEGIKIGMIHGGLTPRERKQQMKRIRNLDF 295

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q ++ASDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL   ++  +
Sbjct: 296 QFVIASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYGPDEESN 355

Query: 357 IDAIEK--LIEKKVDWLNGDLSSL 378
           I  IE      K VD  NG+L  +
Sbjct: 356 ITLIEDKGYKFKNVDIKNGELKPI 379


>gi|110678334|ref|YP_681341.1| DEAD-box ATP dependent DNA helicase [Roseobacter denitrificans OCh
           114]
 gi|109454450|gb|ABG30655.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Roseobacter
           denitrificans OCh 114]
          Length = 705

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 188/338 (55%), Gaps = 6/338 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF---VLPMLTILEKGRARVR 71
           A+ + GY   TP+Q       L + D+   AQTG+GKT  F   + P L   ++      
Sbjct: 16  ALAEQGYDTLTPVQEAVTAPELAKADLLVSAQTGSGKTVGFGLAIAPTLLGEQEHFGPAG 75

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
            P  LI+ PTRELA QVA             V   +GG+    + + L+RGA V++ TPG
Sbjct: 76  TPLALIIAPTRELAQQVARELSWLYAKAGAVVISCVGGMDTRTERRALDRGAHVVVATPG 135

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+ DH  RG + ++ +  +V+DEAD MLD+GF   ++ I    P  R+TLLFSAT+   +
Sbjct: 136 RLCDHIKRGNIELSGLRAVVLDEADEMLDLGFREELEFILDEAPTDRRTLLFSATVPKAI 195

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
            K++E++ ++ +RIE  + +     IE+  + T+ +  +   +   +L+  +  KN I+F
Sbjct: 196 AKLAESYQRDAQRIETVSETRQHADIEYRALNTHPRDVENAII--NVLRFYEA-KNAIVF 252

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           CN +  V  L      +GFSV A+ G + Q  R   L   ++G  ++ VA+D+AARG+D+
Sbjct: 253 CNTRAAVARLTTRFTNRGFSVVALSGELTQSERSNALQALRDGRARVCVATDVAARGIDL 312

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           P++  V + D+P+ ++  +HR GRTGRAGR G +  +V
Sbjct: 313 PNLELVIHADLPSNSDTLLHRSGRTGRAGRKGVSALIV 350


>gi|1536826|dbj|BAA11901.1| rhlE [Shewanella violacea]
          Length = 206

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 102/206 (49%), Positives = 141/206 (68%), Gaps = 1/206 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV   GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTSLGLSAPILKAVASKGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +G RA+ +  R L+L PTRELAAQVA++ E YGK   L  A++ GG+    Q  KL
Sbjct: 61  ELLSRGNRAQAKKVRALVLTPTRELAAQVAESVETYGKYLPLKSAVIFGGVGIGPQISKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD +N+G +  N +E+L++DEADRMLDMGFI  I+ I  ++P  RQ
Sbjct: 121 GKGVDILVATPGRLLDLYNQGAVNFNQLEVLILDEADRMLDMGFIHDIKKILRVLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRI 205
            L+FSAT +D+++K+++  + NP  I
Sbjct: 181 NLMFSATFSDDIRKLAKGLVNNPVEI 206


>gi|3775993|emb|CAA09199.1| RNA helicase [Arabidopsis thaliana]
          Length = 505

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 199/361 (55%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P+L 
Sbjct: 132 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLE 191

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++    ++    +I+ PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 192 KIDQDNNVIQ---AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQ 248

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P ++++ S +P +RQ L
Sbjct: 249 PVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQIL 308

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++   + FL NP  I +     T + I   +   + +  +K   L  L  S
Sbjct: 309 MFSATFPVTVKDFKDRFLTNPYVINL-MDELTLKGITQFY--AFVEERQKIHCLNTLF-S 364

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 365 KLQINQSIIFCNSVNRVELLAKKITELGYSCSYIHAKMLQDHRNRVFHDFRNGACRNLVC 424

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 425 TDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 484

Query: 362 K 362
           +
Sbjct: 485 Q 485


>gi|255079594|ref|XP_002503377.1| predicted protein [Micromonas sp. RCC299]
 gi|226518643|gb|ACO64635.1| predicted protein [Micromonas sp. RCC299]
          Length = 489

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 197/372 (52%), Gaps = 30/372 (8%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT----- 61
           GLS + +  +   GY  PTPIQ + IP +LQ  DV GIA+TG+GKTA+F+LP L      
Sbjct: 60  GLSAETLKILKRMGYASPTPIQSQAIPALLQGRDVVGIAKTGSGKTAAFLLPALVHAMDQ 119

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L KG      P  L+L PTREL +Q+    +K  + +  L    ++GG       ++L
Sbjct: 120 PELSKGDG----PIVLVLAPTRELGSQILAECKKLARAHEGLRCVGVLGGGSKTENFREL 175

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNN---IEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             GA+V++ TPGR++D    G     N   +  L +DEADRMLDMGF   ++++   V  
Sbjct: 176 RAGAEVVVGTPGRVVDVCGGGNKAATNLARVTYLALDEADRMLDMGFEAQVRSLCDGVRP 235

Query: 177 TRQTLLFSATMTDELQKVSENFLQ-----------NPKRIEVNTPSSTAETIEHCFVATY 225
            RQT LFSATM   ++ + ++ L             P  I V  P      +   F    
Sbjct: 236 DRQTALFSATMPARVRALCDDVLGLIDSRANDGAVGPLTITVGRPGGANSDVAQ-FAEVL 294

Query: 226 AQYSKKCALLQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQR 282
           A  S    L   + + ++ +  G  ++FC +K  V     +L +  G  V  +HG++ Q 
Sbjct: 295 ADGSDDARLTWLVARIREFVDEGEVLVFCARKTQVDACVAALRDTAGARVGGMHGDMHQS 354

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-R 341
            R   L  F++G   ++VA+D+AARGLD+P V  V +   P   E+++HRIGRTGRAG +
Sbjct: 355 DRAAALRAFRKGETHVLVATDVAARGLDVPSVRTVVSLHPPRDIESHVHRIGRTGRAGNK 414

Query: 342 HGKAFTLVAKED 353
            G+AFTLVA+ D
Sbjct: 415 DGRAFTLVARTD 426


>gi|242803584|ref|XP_002484204.1| DEAD box  RNA helicase (Hca4), putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218717549|gb|EED16970.1| DEAD box RNA helicase (Hca4), putative [Talaromyces stipitatus ATCC
           10500]
          Length = 817

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 143/459 (31%), Positives = 244/459 (53%), Gaps = 36/459 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F++L LS      +  + +   T IQ ++IP  L+  D+ G A+TG+GKT +F++P+L  
Sbjct: 51  FSELPLSDPTSSGLTASHFKSLTDIQSRSIPYALKGRDILGAAKTGSGKTLAFLVPVLEN 110

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  K          ++L PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L R
Sbjct: 111 LYRKKWTEYDGLGAIVLSPTRELAIQIFEVLRKVGRYHTFSAGLVIGGKSLKEEQERLGR 170

Query: 122 GADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++  +L + N+++LV+DEADR++DMGF   +  I   +P TRQT
Sbjct: 171 -MNILVCTPGRMLQHLDQTAELDVYNLQMLVLDEADRIMDMGFQQTVDAIIEHLPKTRQT 229

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVN--TPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +LFSAT T ++  ++   LQ+P+ + V+    S+T  T++  ++ T     +K   L   
Sbjct: 230 MLFSATQTKKVSDLARLSLQDPEYVAVHETAASATPSTLQQHYIIT--PLPEKLDTLYSF 287

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++S    K  I+F +  K V  +  SL   + G  +  +HG   Q  R+ I + F +   
Sbjct: 288 IRSNLKSKT-IVFMSSGKQVRFVYESLRHLQPGIPLLHLHGRQKQGGRLDITTRFAQSKH 346

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++ ++D+AARGLD P V  V   D P  A+ YIHR+GRT R  R+G+A   +   + + 
Sbjct: 347 AVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERNGRAVLFLDPSEEEG 406

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ--KSTGFDRRKKNYS 414
           +  +++L +KKV            P+E+I++     A+K   I    ++  F   +  Y 
Sbjct: 407 M--LKRLEQKKV------------PIERINV----KAKKQQSIKDQLQNMCFKDPELKYL 448

Query: 415 SQKSHIPLKESEKISKLQQDIQEND------ADSLGFRG 447
            QK+ I   +S  + K ++  +  D      A SLG  G
Sbjct: 449 GQKAFISYVKSIHVQKDKEVFKVKDLALDAFASSLGLPG 487


>gi|183234688|ref|XP_649929.2| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|169800959|gb|EAL44543.2| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 723

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 124/347 (35%), Positives = 185/347 (53%), Gaps = 9/347 (2%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV-RMPRTLILEPTREL 84
           PIQ+ T   +  R DV G AQTG+GKT SF LP++  L     R  + PR + L PTREL
Sbjct: 92  PIQVSTYSPIYYRKDVVGKAQTGSGKTISFTLPLMERLRAENERKGKNPRVICLSPTREL 151

Query: 85  AAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLM 144
           A Q+A+ F +        V  + GG+  + Q  KL+ G DV++ TPGR+ D F+R  L +
Sbjct: 152 AIQIAEEFTQCSCG-KFKVICVYGGVDIQGQINKLQSGVDVIVGTPGRVRDLFDRQFLKL 210

Query: 145 NNIEILVIDEADRMLDMGFIPYIQNITSLV------PFTRQTLLFSATMTDELQKVSENF 198
           ++IE +V+DEAD ML++GF   +  I   V        T QTLLFSATM   ++++SE +
Sbjct: 211 DSIETIVLDEADEMLNIGFKEEVTQIMDFVHGSVPKESTVQTLLFSATMPAWVKEISEKY 270

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           L++   +   T  +T        +A    Y  K   +  L++        I+FC+ K   
Sbjct: 271 LRDDAEVIDVTVGNTQVPKNAKHLACRIFYQSKTQTIADLIRVYGRTGRTIVFCDTKAEC 330

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            + C       F    +HG+I Q+ R + L+ F+E    ++VA+D+AARGLDI  V  + 
Sbjct: 331 TD-CAIAINPIFECQQLHGDIQQKQREQTLNGFRENKFNVLVATDVAARGLDISGVDLII 389

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
              VP     Y+HR GRT RAG+ G   TL  ++++  +  IE  I+
Sbjct: 390 MTHVPKDIPQYVHRAGRTARAGKEGTTITLFTRKELPQLQLIESRIK 436


>gi|15221761|ref|NP_175829.1| EIF4A-2; ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|1170505|sp|P41377|IF4A2_ARATH RecName: Full=Eukaryotic initiation factor 4A-2; Short=eIF-4A-2;
           AltName: Full=ATP-dependent RNA helicase eIF4A-2;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 19
 gi|4585969|gb|AAD25605.1|AC005287_7 Eukaryotic Initiation Factor 4A-2 [Arabidopsis thaliana]
 gi|14423372|gb|AAK62368.1|AF386923_1 Eukaryotic Initiation Factor 4A-2 [Arabidopsis thaliana]
 gi|16226681|gb|AAL16231.1|AF428462_1 At1g54270/F20D21_52 [Arabidopsis thaliana]
 gi|16556|emb|CAA46189.1| eukaryotic translation initiation factor 4A-2 [Arabidopsis
           thaliana]
 gi|21593545|gb|AAM65512.1| eukaryotic translation initiation factor 4A, putative [Arabidopsis
           thaliana]
 gi|30725682|gb|AAP37863.1| At1g54270 [Arabidopsis thaliana]
 gi|110740791|dbj|BAE98493.1| Eukaryotic Initiation Factor 4A-2 [Arabidopsis thaliana]
 gi|332194952|gb|AEE33073.1| translation initiation factor 4A-2 [Arabidopsis thaliana]
          Length = 412

 Score =  209 bits (532), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 198/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 41  FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    + +    L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 101 LDYALLQCQ---ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAG 157

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 158 VHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 217

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 218 FSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLA 277

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 278 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 332

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V  +D + +  
Sbjct: 333 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFD 392

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     V+ L  +++ L
Sbjct: 393 IQKFYNVVVEELPSNVADL 411


>gi|212539820|ref|XP_002150065.1| DEAD box  RNA helicase (Hca4), putative [Penicillium marneffei ATCC
           18224]
 gi|210067364|gb|EEA21456.1| DEAD box RNA helicase (Hca4), putative [Penicillium marneffei ATCC
           18224]
          Length = 819

 Score =  209 bits (532), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 128/391 (32%), Positives = 217/391 (55%), Gaps = 24/391 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F++L LS      +  + +   T IQ ++IP  L+  D+ G A+TG+GKT +F++P+L  
Sbjct: 51  FSELPLSDPTTSGLAASHFKSLTDIQSRSIPYALKGRDILGAAKTGSGKTLAFLIPVLEN 110

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  K          ++L PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L R
Sbjct: 111 LYRKKWTEYDGLGAIVLSPTRELAIQIFEVLRKVGRYHTFSAGLVIGGKSLKEEQERLGR 170

Query: 122 GADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++  +L + N+++LV+DEADR++DMGF   +  I   +P TRQT
Sbjct: 171 -MNILVCTPGRMLQHLDQTAELDVYNLQMLVLDEADRIMDMGFQKTVDAIVEHLPKTRQT 229

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVN--TPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT T ++  ++   LQ+P+ + V+    S+T  T++  ++ T     +K   L   
Sbjct: 230 LLFSATQTKKVSDLARLSLQDPEYVAVHEAAASATPSTLQQHYIIT--PLPEKLDTLFSF 287

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++S    K  I+F +  K V  +  SL   + G  +  +HG   Q  R+ I + F     
Sbjct: 288 IRSNLKSKT-IVFMSSGKQVRFVYESLRHLQPGIPLLHLHGRQKQGGRLDITTRFANSKH 346

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++ ++D+AARGLD P V  V   D P  A+ YIHR+GRT R  R+G+A   +   + + 
Sbjct: 347 AVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERNGRAVLFLDPSEEEG 406

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
           +  +++L +KKV            P+E+I++
Sbjct: 407 M--LKRLEQKKV------------PIERINV 423


>gi|170039659|ref|XP_001847645.1| ATP-dependent RNA helicase DBP4 [Culex quinquefasciatus]
 gi|167863269|gb|EDS26652.1| ATP-dependent RNA helicase DBP4 [Culex quinquefasciatus]
          Length = 735

 Score =  209 bits (532), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 138/397 (34%), Positives = 209/397 (52%), Gaps = 26/397 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K V  +    Y  PT IQ ++I   LQ  D+   A+TG+GKT +F++P+   
Sbjct: 67  FSDFPLSKKTVQGLAQGQYRVPTAIQRQSILPALQGKDILAAAKTGSGKTLAFLIPVFEK 126

Query: 63  LEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   R  R+     LI+ PTRELA Q+ +   K GKN++ T  L+IGG     QN K E+
Sbjct: 127 LYTNRWTRLDGLGALIITPTRELALQIFETVAKIGKNHDFTTGLIIGG-----QNLKFEK 181

Query: 122 GA----DVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
                 +++ICTPGR+L H +   L    N+++LV+DEADR LDMGF   +  I   +P 
Sbjct: 182 SRLHQLNIIICTPGRLLQHMDTNPLFDCTNLKVLVLDEADRCLDMGFQTAMNAIIENLPT 241

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRI------EVNTPSSTAETIEHCFVATYAQYSK 230
           TRQTLLFSAT T  ++ ++   L +P  I      E  TPS     ++  +V    + S+
Sbjct: 242 TRQTLLFSATQTKSVKDLARLNLTDPVYIAPHEKEEYTTPSR----LQQNYVT--VELSE 295

Query: 231 KCALLQQLLQSQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           K  +L   L+S    K  + F  C Q +    +   L +    +  ++G ++Q  R KI 
Sbjct: 296 KLTMLWSFLKSHSKQKIIVFFATCKQVRYHYEIFRKL-RPSILLLPLYGGMNQEKRNKIY 354

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           + F   +   ++A+D+A+RGLD P V  V   D P  A  YIHR GRT R    G++  +
Sbjct: 355 AEFCSRSNVCLMATDVASRGLDFPKVNWVVQLDCPEDATQYIHRAGRTARLNTAGESLLV 414

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
           +  ++ + + A+    +  ++ +N DL  L  PL KI
Sbjct: 415 LLPQEEEGVVAMLGRTKVPINKINVDLKQLFSPLVKI 451


>gi|328859369|gb|EGG08478.1| hypothetical protein MELLADRAFT_47739 [Melampsora larici-populina
           98AG31]
          Length = 404

 Score =  209 bits (532), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 203/368 (55%), Gaps = 5/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  + L  +++  +   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F    ++
Sbjct: 32  NFDAMELKAELLRGIYAYGFERPSAIQQRAIIPVIKGHDVIAQAQSGTGKTATF---SIS 88

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL+     ++  + L+L PTRELA Q+       G   N+     +GG        KL+ 
Sbjct: 89  ILQSIDVNIKACQALVLAPTRELAQQIQKVLVALGDYLNIECYAAVGGTSVREGMAKLQE 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  ++I+I  +DEAD ML  GF   I ++  L+P T Q +
Sbjct: 149 GVHVIVGTPGRVYDMIQRRALKTDHIKIFTLDEADEMLSRGFKDQIYDVFQLLPPTTQVV 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F++ P RI V     T E I+  ++A   +  K   L    L  
Sbjct: 209 LLSATMPQDVLEVTSKFMREPIRILVKRDELTLEGIKQFYIAVEKEEWKLDTLCD--LYE 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V ++HG+++Q  R  I+  F+ G+ ++++ 
Sbjct: 267 TVTITQAVIFCNTRRKVDWLQEKLTGREFTVSSMHGDMEQGQREVIMKEFRSGSSRVLIT 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V+ ED+  +  +E
Sbjct: 327 TDLLARGIDVQQVSLVINYDLPVSKENYIHRIGRGGRFGRKGVAINFVSSEDVAALRELE 386

Query: 362 KLIEKKVD 369
           +    ++D
Sbjct: 387 RFYNTQID 394


>gi|302922639|ref|XP_003053509.1| hypothetical protein NECHADRAFT_74731 [Nectria haematococca mpVI
           77-13-4]
 gi|256734450|gb|EEU47796.1| hypothetical protein NECHADRAFT_74731 [Nectria haematococca mpVI
           77-13-4]
          Length = 1201

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 127/370 (34%), Positives = 201/370 (54%), Gaps = 37/370 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A  GL+ + +  + + GY KPTPIQ++ +P ++   DV G+A+TG+GKT +F+LPM   
Sbjct: 605 WAQCGLTRQTLDVIDNLGYEKPTPIQMQALPALMSGRDVIGVAKTGSGKTVAFLLPMFRH 664

Query: 63  LEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + K +  ++    P  LI+ PTRELA Q+  + + + K   L      GG P   Q  +L
Sbjct: 665 I-KDQPPLKDTDGPIGLIMTPTRELAVQIHRDCKPFLKMMGLRSVCAYGGAPIREQIAEL 723

Query: 120 ERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D    N+G++  +  +  +V+DEADRM DMGF P +  I + +  
Sbjct: 724 KRGAEIIVCTPGRMIDLLAANQGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIFANMRP 783

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +QT+LFSATM   +  +++  L+NP  + V   S  A+ IE   V    + SK   +L+
Sbjct: 784 DKQTILFSATMPRIIDSLTKKVLKNPIEVTVGGRSVVAKEIEQ-IVEVRDEPSKFLRVLE 842

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L +  D  ++                                DQ  R   +S+FK+G +
Sbjct: 843 LLGELYDRDED-----------------------------ARKDQVDRDSTISDFKKGVV 873

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T V  E    
Sbjct: 874 PILIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGVAVTFVTPEQENC 933

Query: 357 IDAIEKLIEK 366
              I K +E+
Sbjct: 934 APGIAKALEQ 943


>gi|19115766|ref|NP_594854.1| translation initiation factor eIF4A [Schizosaccharomyces pombe
           972h-]
 gi|1708418|sp|P47943|IF4A_SCHPO RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|1321961|emb|CAA56772.1| translation initiation factor eIF-4A [Schizosaccharomyces pombe]
 gi|2222814|gb|AAB61679.1| cell cycle control protein eIF-4A [Schizosaccharomyces pombe]
 gi|6318257|emb|CAB60237.1| translation initiation factor eIF4A [Schizosaccharomyces pombe]
          Length = 392

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 129/376 (34%), Positives = 208/376 (55%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L P+++  +   G+ +P+ IQ + I  +L   DV   AQ+GTGKTA+F    +++
Sbjct: 21  FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATF---SISV 77

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    ++  + LIL PTRELA Q+       G   N+     IGG         L+ G
Sbjct: 78  LQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAG 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + +++ V+DEAD ML  GF   I +I  L+P T Q +L
Sbjct: 138 VHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVL 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  +VA   +  K   L    L   
Sbjct: 198 LSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCD--LYET 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L ++ F+V ++HG++DQ  R  ++  F+ G+ ++++ +
Sbjct: 256 VTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITT 315

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G +   V  +D++ +  IE+
Sbjct: 316 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQ 375

Query: 363 LIEKKVDWLNGDLSSL 378
                ++ +  +++ L
Sbjct: 376 FYNTHIEEMPMNIADL 391


>gi|270290969|ref|ZP_06197192.1| ATP-dependent RNA helicase YqfR [Pediococcus acidilactici 7_4]
 gi|270280365|gb|EFA26200.1| ATP-dependent RNA helicase YqfR [Pediococcus acidilactici 7_4]
          Length = 453

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 194/353 (54%), Gaps = 15/353 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    L P ++ A+   G+VKPTP+Q + IPL+ +   V G +QTG+GKT +F+LP+  
Sbjct: 3   EFQKFNLKPFLMQALDQIGFVKPTPVQERVIPLIAEGQSVVGQSQTGSGKTHAFLLPIFN 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL--LIGGIPFEAQNKKL 119
            ++  +  ++    +I  P+RELA Q+ +  ++        + +   +GG   + Q  KL
Sbjct: 63  QIDPAKNAIQ---AVITTPSRELAYQIYEAAKQLAAASETPIEIGNYVGGTDKKRQIAKL 119

Query: 120 ER-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           E     ++I TPGR+LD      L    +  LVIDEAD  LDMGF+  +  I + +P   
Sbjct: 120 EHHQPAIVIGTPGRVLDLLQARALNFRQVRYLVIDEADMTLDMGFLSAVDQIAASMPENL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+  +L    + ++++P   E+   ++ + TI++  ++T +Q   K  L+ QL
Sbjct: 180 QMLVFSATIPQQLNVFLQKYMEHPAIEEIPVATTISPTIKNILISTKSQ--DKNNLIYQL 237

Query: 239 LQSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L    TM      ++F N K+    L + L+ QG  V  IHG I  R R +I+ +     
Sbjct: 238 L----TMGEPYLALVFTNTKERADELTNYLKSQGLPVAKIHGGIPPRERKRIMKDIHRLR 293

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            Q +VA+DLAARG+DI  V  V N D+P   E +IHR+GRTGR G  G A TL
Sbjct: 294 YQYVVATDLAARGIDIEGVSLVINDDIPTDLEFFIHRVGRTGRNGLPGTAITL 346


>gi|323357554|ref|YP_004223950.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
 gi|323273925|dbj|BAJ74070.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
          Length = 515

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 130/381 (34%), Positives = 197/381 (51%), Gaps = 10/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   ++  +   G  +P PIQ  T+P  L   DV G  +TG+GKT +F LP++  
Sbjct: 6   FADLGVPAPLIDVLAAQGKNEPFPIQADTLPDTLAGRDVLGRGKTGSGKTLAFSLPLVAR 65

Query: 63  LEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L     R R R PR L+L PTRELA Q+ +  +   + + L    + GG+  + Q   L 
Sbjct: 66  LAANTDRRRGRKPRALVLAPTRELANQIDEVIKPLAQPFGLVTTTVYGGVNQKRQVDALN 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+  PGR+ D   +G   + +IEI V+DEAD M D+GF+P +  + +  P   Q 
Sbjct: 126 AGVDILVACPGRLEDLIGQGFANLGDIEITVLDEADHMADLGFLPGVTRLLARTPADGQR 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTP-SSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+ + + K+ + FL+N     V+   S  A    H F    A   K    L Q L
Sbjct: 186 LLFSATLDNGVDKLVKRFLRNEVLHSVDEAHSHVAAMTHHVFAPADADAKKD---LVQTL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S    +  I+F   K     L   L   G     +HGN+ Q +R + L+ F +G  +++
Sbjct: 243 ASGTARR--ILFMRTKHQAKKLAKQLTASGIPAVDLHGNLSQPARDRNLAAFGDGRAKVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+ +  V  V + D P   + Y+HR GRT RAG  G   T++  E  +  D 
Sbjct: 301 VATDVAARGVHVDGVELVVHVDPPVEHKAYLHRSGRTARAGSAGDVVTIMLPEQRR--DT 358

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           ++ L + K+      ++S +P
Sbjct: 359 LDILRKAKISATPTPVTSTSP 379


>gi|148543767|ref|YP_001271137.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus
           reuteri DSM 20016]
 gi|184153173|ref|YP_001841514.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112]
 gi|148530801|gb|ABQ82800.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri DSM
           20016]
 gi|183224517|dbj|BAG25034.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112]
          Length = 457

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 130/380 (34%), Positives = 206/380 (54%), Gaps = 16/380 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  L P ++ A+    + +PTP+Q + IP+++    V G + TG+GKT +F+LP   I
Sbjct: 6   FADFQLQPYLLTAIQKINFRQPTPVQQRVIPVIMAGRSVVGQSATGSGKTHAFLLP---I 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             K +   +  + +I  P+RELA Q+   A    KY   + LT+   +GG   + Q  +L
Sbjct: 63  FSKIKPEDQTVQAVITTPSRELAYQIYNAAKQLNKYAP-HPLTIHNYVGGTDKQHQVDQL 121

Query: 120 ERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            R    ++I TPGR+LD      L ++  ++ V+DEAD  LDMGF+  +  I S  P   
Sbjct: 122 SRKQPQLVIGTPGRVLDLIKSQALDIHTAKMFVVDEADMTLDMGFLHEVDQIASHFPNDL 181

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT+  +L+   + +++NP   E+ T +     +++  ++T  Q   +  L+ +L
Sbjct: 182 QMMVFSATIPQKLRPFLKKYMENPVVEEIPTEAVINPDVDNWLMSTKGQ--DRNQLIYRL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   +     ++F N K+  V L   LE QG  V  IHG ++ R R + +   ++   Q 
Sbjct: 240 LTLGEPYL-ALVFANTKERAVKLTQYLENQGLKVAMIHGGLEARRRKRTMRQIRDLEYQY 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHI 357
           +VA+DLAARG+DI  V  V N D+P   E ++HR+GRTGR G  G A TL    ED    
Sbjct: 299 VVATDLAARGIDIDGVSLVINDDLPTDLEYFVHRVGRTGRNGMKGTAITLYEPAED---- 354

Query: 358 DAIEKLIEKKVDWLNGDLSS 377
           D I KL E+ V ++  +L +
Sbjct: 355 DLIAKLEERGVKFVPKELKN 374


>gi|226291927|gb|EEH47355.1| ATP-dependent RNA helicase DBP4 [Paracoccidioides brasiliensis
           Pb18]
          Length = 814

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 132/392 (33%), Positives = 216/392 (55%), Gaps = 26/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL LS   +  +  + +   T IQ K +P  L+  D+ G A+TG+GKT +F++P+L +
Sbjct: 51  FADLPLSEASLDGLSASHFKTLTSIQAKALPHALKGRDILGAAKTGSGKTLAFLVPLLEL 110

Query: 63  L-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  K          L+L PTRELA Q+ +   K G++++ +  L+IGG   + + ++L R
Sbjct: 111 LYRKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHSFSAGLVIGGKSLQEEQERLGR 170

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++      N I++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 171 -MNILVCTPGRMLQHMDQTAAFDTNRIQLLVLDEADRIMDMGFQNTVDAIVEHLPKERQT 229

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYSKKCALLQQL 238
           +LFSAT T ++  ++   LQ+P+ I V+  +S+A    ++  ++ T     +K   L   
Sbjct: 230 MLFSATQTQKVSDLARLSLQDPEYISVHEAASSATPAKLQQNYIVT--PLPEKLDTLWSF 287

Query: 239 LQSQDTMKNGI-IFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++S  ++K+ I +F +  K V  +  S    + G S+  +HG   Q +R+ I   F    
Sbjct: 288 IRS--SLKSKIMVFFSSGKQVRFVYESFRHMQPGISLLHLHGRQKQGARVDITKKFSVAK 345

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
              + A+D+AARGLD P V  V   D P  A+ YIHR GRT R  R+G+A   +  E  +
Sbjct: 346 HACLFATDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFL--EPSE 403

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
               +++L +KK+            P+EKI++
Sbjct: 404 EAAMLKRLEQKKI------------PIEKINV 423


>gi|268532748|ref|XP_002631502.1| Hypothetical protein CBG20666 [Caenorhabditis briggsae]
 gi|187022955|emb|CAP37633.1| hypothetical protein CBG_20666 [Caenorhabditis briggsae AF16]
          Length = 502

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 120/372 (32%), Positives = 197/372 (52%), Gaps = 14/372 (3%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
            G +  ++  +   G+ KP+PIQ +  P++L   D  G++QTG+GKT +F+LP    ++ 
Sbjct: 89  FGHNQSIMNEIQKNGFEKPSPIQSQMWPILLSGQDCIGVSQTGSGKTLAFLLPAFLHIDA 148

Query: 66  GRARVR------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             A+         P  L+L PTRELA Q+    +KY  N   +V L  GG   E Q +  
Sbjct: 149 QLAQYDKNEKKPSPSVLVLSPTRELAQQIEGEVKKYSYNGYKSVCLYGGGSRSE-QVQSC 207

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G +++I TPGR+ D  N G + + ++  +V+DEADRMLDMGF   I+ I   +   R 
Sbjct: 208 KGGVEIVIATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEAAIRRILFEIRPDRL 267

Query: 180 TLLFSATMTDELQKVSENFLQNP-----KRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
             L SAT  + ++ +++ + +         +++ +  S  +  E  F+    ++ + C +
Sbjct: 268 VALTSATWPEAVRNLTDRYTKQAIMAVNGTLDLASCKSVTQYFE--FIPQENRFDRVCEI 325

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +  L Q        IIF   K    +L      +G +   +HG   Q  R   L   K G
Sbjct: 326 VNFLNQQFGNSYKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDRELSLKMLKTG 385

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            +Q++VA+DLA+RG+D+PD+ HV N+D P   E Y+HR+GRTGRAGR G++ + +   D 
Sbjct: 386 EVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGESMSFMWWNDR 445

Query: 355 KHIDAIEKLIEK 366
            + D +  ++EK
Sbjct: 446 SNFDGLISILEK 457


>gi|328790612|ref|XP_003251437.1| PREDICTED: eukaryotic initiation factor 4A-like [Apis mellifera]
          Length = 548

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 214/379 (56%), Gaps = 9/379 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L  +++  +   G+ KP+ IQ + I   ++ HDV   AQ+GTGKTA+F    ++
Sbjct: 176 NFDEMNLKEELLRGIYAYGFEKPSAIQQRAILPCIRGHDVIAQAQSGTGKTATF---SIS 232

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    ++  + LIL PTRELA Q+       G   +      IGG       +KL++
Sbjct: 233 ILQQIDTTIKECQALILAPTRELAQQIQKVVIALGDFMHAECHACIGGTNVREDMRKLDQ 292

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D  +R  L  ++I++ V+DEAD ML  GF   I ++  L+P   Q +
Sbjct: 293 GVHIVVGTPGRVYDMISRRALRASSIKLFVLDEADEMLSRGFKDQIHDVFKLLPHEVQVI 352

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++  VS+ F++NP RI V     T E I+  F+    +  K     + L   
Sbjct: 353 LLSATMPSDVLDVSKCFMRNPIRILVKKEELTLEGIKQFFIYVEREEWK----FETLCDL 408

Query: 242 QDTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            DT+     +IFCN ++ V  L  S+  + F+V A+HG+++Q+ R  I+  F+ G+ +++
Sbjct: 409 YDTLSITQAVIFCNTRRKVDWLTESMRTRDFTVSAMHGDMEQKERDLIMRQFRTGSSRVL 468

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A  LV  +D + +  
Sbjct: 469 ITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINLVTDDDKRTLKD 528

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+     ++ +  +++ L
Sbjct: 529 IEQFYNTSIEEMPMNVADL 547


>gi|90407101|ref|ZP_01215290.1| ATP-dependent RNA helicase SrmB [Psychromonas sp. CNPT3]
 gi|90311823|gb|EAS39919.1| ATP-dependent RNA helicase SrmB [Psychromonas sp. CNPT3]
          Length = 465

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 121/375 (32%), Positives = 201/375 (53%), Gaps = 13/375 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  L L   ++ A+   G+ +PT IQ+  IP  +   D+   A TGTGKT +F+LP +  
Sbjct: 7   FDALELDESLLDAISLMGHTRPTSIQLLAIPPAMDEQDIMASAPTGTGKTLAFLLPAIQR 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++  R +    R LIL PTRELA Q++   ++  +  +L V  +IGG+ ++ Q   +  
Sbjct: 67  LIDFPRRKGGSARILILTPTRELAMQISGVAQQLTQATSLVVGNIIGGVSYQEQEAIITD 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D++I TPGR++++ +        +E L++DEADRMLDMGFI  +  I     + +QT 
Sbjct: 127 NVDIVIATPGRLMEYIDAEAFDCREVESLILDEADRMLDMGFINEMDRIAGETRWRKQTS 186

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETI---EHCFVATYAQYSKKCALLQQ 237
           LFSAT+  + L+  S + L  P  + +N   S  E+    +   +A   ++  K      
Sbjct: 187 LFSATLEGKGLRDFSRDVLNEP--LALNAIISRRESGKINQWIHLADSPEHKLKLLAELL 244

Query: 238 LLQSQDT------MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             ++ D        K  I+F   ++ +  L   L +       + G +DQ  R   L+ F
Sbjct: 245 KDENNDADSEEKIAKKIIVFVKTRERLAFLVSQLAELNIHCNYLRGEMDQEKRTLALAQF 304

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           KE  + +++A+D+AARG+D+ D+ HV N+D+P  A+ Y+HRIGRT R G+ G A +L+  
Sbjct: 305 KEDKVNILIATDVAARGIDVADITHVINYDLPRSADIYVHRIGRTARGGKKGTAISLIEA 364

Query: 352 EDIKHIDAIEKLIEK 366
            DI  +  IE+  ++
Sbjct: 365 HDIDMLAKIERYTDQ 379


>gi|110339425|gb|ABG67961.1| eukaryotic initiation factor 4A [Callinectes sapidus]
          Length = 432

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 129/363 (35%), Positives = 199/363 (54%), Gaps = 11/363 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   G+ KP+ IQ + I   ++ HD    AQ+GTGKTA+F    ++I
Sbjct: 61  FDDMNLDEALLRGIYAYGFEKPSAIQQRAILPCIRGHDAIAQAQSGTGKTATF---SISI 117

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++   +    + LIL PTRELA Q+       G   N+T    IGG       ++LE G
Sbjct: 118 LQRIDVKSNETQALILAPTRELAQQIQKVVLALGDYMNVTCHACIGGTNLREDMRRLEMG 177

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ D  NR  L   +I++ V+DEAD ML  GF   I ++   +P   Q +L
Sbjct: 178 VQIIVGTPGRVYDMINRRVLNPKHIKMFVLDEADEMLSRGFKDQIYDVFRFLPSEVQVVL 237

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
            SATM  ++  V+  F+++P  I V     T E I+  +V    +  K    C L + L 
Sbjct: 238 LSATMPSDVMDVTTKFMRDPITILVKKEELTLEGIKQFYVNVEKEDWKLETLCDLYETL- 296

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + ++ F+V A+HG++DQ+ R  I+  F+ G+ +++
Sbjct: 297 ----TITQAVIFCNTRRKVDWLTDKMHQRDFTVSAMHGDMDQKERDVIMREFRSGSSRVL 352

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  ED + +  
Sbjct: 353 ITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTSEDTRILQD 412

Query: 360 IEK 362
           IE+
Sbjct: 413 IEE 415


>gi|296806549|ref|XP_002844084.1| ATP-dependent RNA helicase DBP10 [Arthroderma otae CBS 113480]
 gi|238845386|gb|EEQ35048.1| ATP-dependent RNA helicase DBP10 [Arthroderma otae CBS 113480]
          Length = 930

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 127/398 (31%), Positives = 206/398 (51%), Gaps = 54/398 (13%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+P ++ A+   G+  PTPIQ KTIPL+L   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 90  FQAMGLNPNLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 149

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +V   R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 150 LKSHSTKV-GARGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMAGN 208

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L H          +E+ +   + R+ +MGF   +  I   +P +RQTLL
Sbjct: 209 PDIIIATPGRFL-HL--------KVEMSLDLSSIRLFEMGFAAQLTEILHALPSSRQTLL 259

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL------- 235
           FSAT+   L + +   LQ P  I ++  S  +  ++  F  T     K+ ALL       
Sbjct: 260 FSATLPKSLVEFARAGLQEPTLIRLDADSKISPELQSAFF-TVKSADKEGALLHILHDLI 318

Query: 236 --------------QQLLQSQDTMKNG----------------------IIFCNQKKNVV 259
                         ++  +++   +N                       I+F   K +V 
Sbjct: 319 KIPTGETEAGKLAAKEAKEAKQDNRNSKKRKRSETKGPGAHVIPAEHSTIVFVATKHHVE 378

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            +   L   GF+V   +G+++Q +R   + NF+ G   ++V +D+AARG+DIP + +V N
Sbjct: 379 YIATLLRHSGFAVSYAYGSLNQTARKIQVQNFRAGISNILVVTDVAARGIDIPVLANVIN 438

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +D P++ + +IHR+GRT RAG+ G +++L+   D  ++
Sbjct: 439 YDFPSQPKIFIHRVGRTARAGQKGWSYSLIRDSDAPYL 476


>gi|217073124|gb|ACJ84921.1| unknown [Medicago truncatula]
          Length = 413

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 198/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDAMGLQENLLRDIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     V   + L+L PTR+LA Q+       G    + V   +GG       + L  G
Sbjct: 102 LDYS---VTECQALVLAPTRKLAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      ++F N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVVFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V  +D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLSD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     ++ L  +++ L
Sbjct: 394 IQKFYNVLIEELPSNVAEL 412


>gi|50425797|ref|XP_461495.1| DEHA2F26598p [Debaryomyces hansenii CBS767]
 gi|49657164|emb|CAG89921.1| DEHA2F26598p [Debaryomyces hansenii]
          Length = 474

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 124/348 (35%), Positives = 184/348 (52%), Gaps = 7/348 (2%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
            + +AG+ KP+P+Q ++IP+ L   D+   A+ GTGKTASFV+P    L++ R +V   +
Sbjct: 2   GIFEAGFEKPSPVQEESIPMALAGRDILARAKNGTGKTASFVIP---CLQQARPKVNKIQ 58

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            LIL PTRELA Q +      GK+  L   +  GG        +L     VL+ TPGR+L
Sbjct: 59  ALILVPTRELALQTSQVVRTLGKHLGLQCMVTTGGTSLRDDILRLNDPVHVLVGTPGRVL 118

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D  +R    ++   + V+DEAD+ML   F   I+ I +  P TRQ+LLFSAT    ++  
Sbjct: 119 DLASRKVADLSECPLFVMDEADKMLSREFKGIIEQILAFFPTTRQSLLFSATFPLAVKSF 178

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
            +  L  P  I +     T   I   +   + +  +K   L  L  S+  +   IIFCN 
Sbjct: 179 MDQHLTKPYEINL-MDELTLRGISQFY--AFVEEKQKLHCLNTLF-SKLQINQAIIFCNS 234

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
              V  L   + + G+S    H  + Q +R K+   F++G ++++V SDL  RG+DI  V
Sbjct: 235 TNRVELLAKKITELGYSCYYSHAKMPQHARNKVFHEFRQGKVRVLVCSDLLTRGIDIQAV 294

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
             V NFD P  AE Y+HRIGR+GR G  G A  L++  D  ++  IE+
Sbjct: 295 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYNLYKIEQ 342


>gi|71006426|ref|XP_757879.1| hypothetical protein UM01732.1 [Ustilago maydis 521]
 gi|74703402|sp|Q4PDT1|DBP3_USTMA RecName: Full=ATP-dependent RNA helicase DBP3
 gi|46097315|gb|EAK82548.1| hypothetical protein UM01732.1 [Ustilago maydis 521]
          Length = 585

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 140/375 (37%), Positives = 205/375 (54%), Gaps = 19/375 (5%)

Query: 1   MDFADL-GLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           +DF +L G     V   LD+ G+  PTPIQ    P++LQ  DV GIA+TG+GKT +F LP
Sbjct: 157 VDFRELDGKVDAAVKKTLDSQGFSTPTPIQACCWPVLLQNKDVVGIAETGSGKTFAFGLP 216

Query: 59  ML-------TILEKGRARVRMPRT--LILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            L        +L+ G+ + +  +   L++ PTRELA Q  +N  K GK+  + +  L GG
Sbjct: 217 ALQHLVTKHKVLDSGKKKAKGAQVNVLVIAPTRELAIQTEENMAKLGKSMGIGMICLYGG 276

Query: 110 IPFEAQNKKLERGADV--LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           +  + Q + L +   V  ++ TPGR+LD    G L ++ +  LV+DEADRMLD GF P I
Sbjct: 277 VSKQEQVRLLNQSPPVRIVVGTPGRVLDMARDGSLDLSGVTYLVLDEADRMLDKGFEPDI 336

Query: 168 QNITSLVPFT---RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           + I  +       R T +FSAT    ++ ++E+F+  P R+ V +   +A       V  
Sbjct: 337 RAIIGMCKSREEGRHTSMFSATWPPAVRGLAESFMNGPVRVTVGSDELSANRRVEQTVEV 396

Query: 225 YAQYSKKCALLQQLLQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
            A    K   L   L+S +  ++    +IF   KK    +  +L + GF V  IHG++ Q
Sbjct: 397 LADGYAKERRLNDFLRSVNAQRSKDKILIFALYKKEAQRIEQTLRRGGFKVSGIHGDLGQ 456

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
             R+  L  FK     L+VA+D+AARGLDIP+V HV N+  P   E+Y+HRIGRTGR G+
Sbjct: 457 NERIASLERFKSAETPLLVATDVAARGLDIPNVEHVVNYTFPLTIEDYVHRIGRTGRGGK 516

Query: 342 HGKAFTLVAKEDIKH 356
            GK+ T   + D  H
Sbjct: 517 TGKSLTFFTEMDKAH 531


>gi|313247629|emb|CBY15795.1| unnamed protein product [Oikopleura dioica]
          Length = 595

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 126/389 (32%), Positives = 206/389 (52%), Gaps = 25/389 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F +      ++  +    + +PT IQ    P+ L   ++ GI++TG+GKT +F+LP ML 
Sbjct: 108 FEECNFPSYILKCIQKCKFTEPTAIQSIGFPIGLSGLNMVGISRTGSGKTLAFLLPSMLH 167

Query: 62  I-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I  ++   R   P  ++L PTRELA QV    + + ++ ++    + GG P   Q + LE
Sbjct: 168 IRAQEPIRRGDGPIAVVLLPTRELAQQVEQVSKDFVESSDIYTTCVFGGAPKGPQIRDLE 227

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G +++I TPGR+LD    GK  +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 228 KGCEIVIATPGRLLDFLEAGKTNLKRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQL 287

Query: 181 LLFSATMTDELQKVSENFLQNP------KRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           L++SAT   E+Q ++++FL +          +++      + ++ C    Y +  K   L
Sbjct: 288 LMYSATWLKEVQALADDFLGDNYIHATIGSTKLSCNKRILQIVDIC--DQYEKDEKLMKL 345

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +  L++ +++    I+F   K+    L + +++  +   AIHG+  Q  R  +L  F+ G
Sbjct: 346 ISHLMEERES--KTIVFTETKRRADELTYKMKRLRWEAAAIHGDKSQSERDHVLKRFRSG 403

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKED 353
            I +++A+D+A+RGLDI DV  V NFD P + E+Y+HRIGRT R     G ++T   + D
Sbjct: 404 RIPILIATDVASRGLDINDVKFVVNFDFPGQIEDYVHRIGRTARGKDAKGTSYTFFTQGD 463

Query: 354 IKHIDAI------------EKLIEKKVDW 370
            KH   +            EKL +   DW
Sbjct: 464 GKHAAGLVTLLKDADQRIPEKLTQMAGDW 492


>gi|332218192|ref|XP_003258243.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Nomascus leucogenys]
          Length = 783

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 131/355 (36%), Positives = 201/355 (56%), Gaps = 21/355 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ KT   V    D+   A+TGTGKT SF +P++  
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247

Query: 63  LE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L    + R R R P+ L+L PTRELA QV+ +F    K   L+VA   GG P+  Q +++
Sbjct: 248 LHEELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 305

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   GKL +  ++ +V+DE D+MLDMGF   ++ I S V + + 
Sbjct: 306 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILS-VAYKKD 364

Query: 179 -----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSK 230
                QTLLFSAT    +  V++ ++++  +++++       TA T+EH  +A    +++
Sbjct: 365 SEDDPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEH--LAIKCHWTQ 422

Query: 231 KCALLQQLLQSQDTMKN-GIIFCNQKKNVVNLCH-SLEKQGFSVCAIHGNIDQRSRMKIL 288
           + A++  +++     +   IIFC  KK    L   S  KQ     ++HG+I Q+ R   L
Sbjct: 423 RAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ--DAQSLHGDIPQKQREITL 480

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
             F+ G+  ++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 481 KGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTG 535


>gi|331234985|ref|XP_003330153.1| ATP-dependent RNA helicase dbp10 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309309143|gb|EFP85734.1| ATP-dependent RNA helicase dbp10 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 998

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 134/416 (32%), Positives = 205/416 (49%), Gaps = 65/416 (15%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPML 60
           F  LGL P ++ A+L  G+  PTPIQ   +P +L     DV G+A+TG+GKT ++++P++
Sbjct: 84  FQSLGLHPSLLRAILLRGFNSPTPIQRAALPHILASPPRDVVGMARTGSGKTLAYLIPLI 143

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQV---------------------ADNFEKYGKNY 99
             L    +     R LIL PTRELA QV                     + + E   K  
Sbjct: 144 QTLSGVHSVQFGIRALILVPTRELALQVLKVGKDLAKGFIQGDRSKPSTSQDSETNHKAE 203

Query: 100 NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159
            L   L++GG   E Q        DV+I TPGR+L       L + ++  +V DEADR+ 
Sbjct: 204 GLRWGLIVGGDSLEDQFTMFSTNPDVIIATPGRLLHLVVEMNLDLKSVAFVVFDEADRLF 263

Query: 160 DMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
           +MGF   ++     +P  RQTLLFSAT+   L + ++  LQNPK I +++ S  +  ++ 
Sbjct: 264 EMGFATQLEETLHRLPANRQTLLFSATLPKSLVEFAKAGLQNPKLIRLDSESKISSDLQM 323

Query: 220 CFVATYAQYSKKCALLQQLL--------------------QSQDTMKNG----------- 248
            F++      K+ ALL  +                     QSQ     G           
Sbjct: 324 AFLSVKP-IEKEAALLVLISNIVGVPKADTTEQPNESFNHQSQPNFSRGSGANLSKIRRK 382

Query: 249 ----------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     I+F   K +V  L   L   G+ V  I+G +DQ +R + L +F+ G   +
Sbjct: 383 PTRELAAHQTIVFTATKHHVEYLGGLLVAAGYRVSLIYGALDQTARREQLDSFRLGQTNI 442

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           +V +DLAARG+DIP + +V N+D P+ A  ++HR+GRT RAGR G A++L+ + ++
Sbjct: 443 LVVTDLAARGIDIPILENVINYDFPSSARAFVHRVGRTARAGRKGWAYSLITQSEL 498


>gi|302839218|ref|XP_002951166.1| DEAD-box RNA helicase, ATP-dependent, cytoplasmic [Volvox carteri
           f. nagariensis]
 gi|300263495|gb|EFJ47695.1| DEAD-box RNA helicase, ATP-dependent, cytoplasmic [Volvox carteri
           f. nagariensis]
          Length = 406

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 196/361 (54%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGKTA+F +P+L 
Sbjct: 33  EFEDYFLKRELLMGIFEKGFEKPSPIQEESIPIALAGRDILARAKNGTGKTAAFCIPVLE 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  R+ ++    L+L PTRELA Q A   ++  K  N+ V +  GG   +    +L +
Sbjct: 93  RVDPTRSVIQ---ALLLVPTRELALQTAQVCKELAKYLNVEVMVTTGGTSLKDDIMRLYQ 149

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++D   +G   +N  ++LV+DEAD++L   F P ++ +   +P  RQ +
Sbjct: 150 TTHIVVATPGRVVDLAGKGVARLNECKMLVMDEADKLLSPEFQPVVEQLIGFLPEDRQIM 209

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    ++   E FL+ P  I +    +     ++     + +  +K   L  L  S
Sbjct: 210 LYSATFPVTVKAFKEKFLRKPYIINLMEELTLKGVTQY---YAFVEEKQKVHCLNTLF-S 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 266 KLRINQSIIFCNSVNRVELLAKKITELGYSCYYIHAKMLQSHRNRVFHDFRNGHCRNLVS 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  +D  ++  IE
Sbjct: 326 SDLFTRGIDIQSVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYDDRINLFKIE 385

Query: 362 K 362
           +
Sbjct: 386 Q 386


>gi|297686801|ref|XP_002820927.1| PREDICTED: nucleolar RNA helicase 2-like [Pongo abelii]
          Length = 783

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 131/355 (36%), Positives = 201/355 (56%), Gaps = 21/355 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ KT   V    D+   A+TGTGKT SF +P++  
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247

Query: 63  LE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L    + R R R P+ L+L PTRELA QV+ +F    K   L+VA   GG P+  Q +++
Sbjct: 248 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 305

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   GKL +  ++ +V+DE D+MLDMGF   ++ I S V + + 
Sbjct: 306 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILS-VAYKKD 364

Query: 179 -----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSK 230
                QTLLFSAT    +  V++ ++++  +++++       TA T+EH  +A    +++
Sbjct: 365 SEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEH--LAIKCHWTQ 422

Query: 231 KCALLQQLLQSQDTMKN-GIIFCNQKKNVVNLCH-SLEKQGFSVCAIHGNIDQRSRMKIL 288
           + A++  +++     +   IIFC  KK    L   S  KQ     ++HG+I Q+ R   L
Sbjct: 423 RAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ--DAQSLHGDIPQKQREITL 480

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
             F+ G+  ++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 481 KGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTG 535


>gi|14517482|gb|AAK62631.1| AT5g62190/mmi9_10 [Arabidopsis thaliana]
          Length = 671

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 130/335 (38%), Positives = 182/335 (54%), Gaps = 18/335 (5%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV-------RMPRTLIL 78
           PIQ  T  +VL   D+ G A+TG GKT +FVLP+L  L  G A+        R P  L+L
Sbjct: 121 PIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVL 180

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QVA +F++YG +  L+   L GG  +  Q  KL+RG D+++ TPGRI DH  
Sbjct: 181 LPTRELAKQVAADFDEYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIE 240

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--QTLLFSATMTDELQKVSE 196
           R  L  + ++  V+DEAD ML MGF+  ++ I   V  +   QTLLFSAT+   ++ +S 
Sbjct: 241 RQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISN 300

Query: 197 NFLQ-NPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
            FL+ + K I++  N     + ++ H  +A     +    L+  ++    +    IIF  
Sbjct: 301 RFLKRDQKTIDLVGNDKMKASNSVRH--IAIPCNKAAMARLIPDIISCYSSGGQTIIFAE 358

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            K  V  L   L+       A+HG I Q  R   L+ F+ G    +VA+++AARGLDI D
Sbjct: 359 TKVQVSELSGLLDGSR----ALHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDIND 414

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           V  +   + P   E YIHR GRTGRAG  G A TL
Sbjct: 415 VQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTL 449


>gi|161506980|ref|YP_001576934.1| putative RNA helicase [Lactobacillus helveticus DPC 4571]
 gi|160347969|gb|ABX26643.1| putative RNA helicase [Lactobacillus helveticus DPC 4571]
          Length = 453

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/365 (35%), Positives = 200/365 (54%), Gaps = 11/365 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  + P +   +    + KPT +Q K IP +L    V   A TG+GKT ++++P+   
Sbjct: 5   FADSRIRPAIQEGLKKIHFEKPTKVQEKVIPAMLSDLSVVVQAATGSGKTHAYLVPIFNE 64

Query: 63  LEKGRARVRMPRTLILEPTRELA---AQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +++    V+   TL   P+RELA    QVA    +     + ++A L GG   E Q +K 
Sbjct: 65  IDEDAHYVQAIVTL---PSRELADQLYQVARQL-RDAAGMHFSIAHLAGGTDRERQLEKY 120

Query: 120 ERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +     ++I TPGR+LD   +   +++ ++  VIDEAD  LDMGF+  I  + S +P   
Sbjct: 121 QNNTPQLVIATPGRLLDFVQKKVFVVDQVKTFVIDEADMTLDMGFLADIDQVASKMPKDV 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q   FSAT+  +L      ++ +P +I ++ PS  A TI++  +   ++ ++K  L + L
Sbjct: 181 QIAAFSATIPVKLSNFLRKYMAHPDQIVIDNPSVIAPTIKNDLLDIGSK-NRKSVLYKLL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q  +   ++F N K+ V  L   L+ QG  V  IHG + +R R + L   ++G  Q 
Sbjct: 240 TMGQPYL--ALVFANTKQTVDELTRYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQFQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARGLDI  V  V N+++P   E  IHRIGRTGR G  G A TL+ +E++  I+
Sbjct: 298 VVASDLAARGLDIDGVSLVINYEIPRDIEFVIHRIGRTGRNGLSGHAITLIREEEMNRIE 357

Query: 359 AIEKL 363
            +EK+
Sbjct: 358 DLEKM 362


>gi|15613948|ref|NP_242251.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
 gi|10174001|dbj|BAB05104.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
          Length = 438

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 126/391 (32%), Positives = 209/391 (53%), Gaps = 19/391 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA   +   ++ A+ D G   PT IQ + IP +    DV G +QTGTGKT +F+LP++ 
Sbjct: 5   NFARFQIKKFLLEALSDKGITHPTEIQERLIPAIRNGKDVIGQSQTGTGKTLAFLLPIVD 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY----NLTVALLIGGIPFEAQNK 117
            +E  R  V+    +I  PTRELA Q+ +  +   ++      +   L++GG       +
Sbjct: 65  RIEGEREEVQ---AVITAPTRELAGQIFEELQALLRHVPHDEEIRAKLIVGGTDRSRTLE 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL     +++ TPGRI D  +   L +    +LV+DEAD+MLDMGFI  +  + + +   
Sbjct: 122 KLRVQPQIVVGTPGRISDLVHEQALNVYTATMLVVDEADQMLDMGFIEDVDKVAARMAEN 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+ ++L+   + ++  P+ + V    +TA  IEH  V    ++  K  +  +
Sbjct: 182 LQMMVFSATIPEKLKPFLKKYMNEPRHVHVQPKQATANLIEHRIVPL--RHRDKLEITTE 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +    +     I+F N K+    L  ++   G +V  +HG +  R R +++   K   +Q
Sbjct: 240 VASVLNPFL-AIVFTNTKEQADELADAMLAAGLNVERLHGGLQPRQRKQVMKRVKNYEVQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V H+ N+ +P   + Y+HR+GRT RAG  G A T+ A ED +  
Sbjct: 299 YLVATDLAARGIDIKGVSHIINYSLPKDLDFYVHRVGRTARAGADGIALTIFAPEDEQ-- 356

Query: 358 DAIEKLIEKKV-----DWLNGDLSSLN-PPL 382
            A+ KL+++ +     D   G+   L+ PPL
Sbjct: 357 -AVHKLMKRGIQFTYYDLKKGEWQKLDKPPL 386


>gi|332218194|ref|XP_003258244.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Nomascus leucogenys]
          Length = 715

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 131/355 (36%), Positives = 201/355 (56%), Gaps = 21/355 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ KT   V    D+   A+TGTGKT SF +P++  
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179

Query: 63  LE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L    + R R R P+ L+L PTRELA QV+ +F    K   L+VA   GG P+  Q +++
Sbjct: 180 LHEELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 237

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   GKL +  ++ +V+DE D+MLDMGF   ++ I S V + + 
Sbjct: 238 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILS-VAYKKD 296

Query: 179 -----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSK 230
                QTLLFSAT    +  V++ ++++  +++++       TA T+EH  +A    +++
Sbjct: 297 SEDDPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEH--LAIKCHWTQ 354

Query: 231 KCALLQQLLQSQDTMKN-GIIFCNQKKNVVNLCH-SLEKQGFSVCAIHGNIDQRSRMKIL 288
           + A++  +++     +   IIFC  KK    L   S  KQ     ++HG+I Q+ R   L
Sbjct: 355 RAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ--DAQSLHGDIPQKQREITL 412

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
             F+ G+  ++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 413 KGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTG 467


>gi|169851879|ref|XP_001832628.1| ATP-dependent RNA helicase dhh1 [Coprinopsis cinerea okayama7#130]
 gi|116506276|gb|EAU89171.1| ATP-dependent RNA helicase dhh1 [Coprinopsis cinerea okayama7#130]
          Length = 509

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 120/362 (33%), Positives = 194/362 (53%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D+ L  +++  + +AG+ KP+PIQ + IP+ L + D+   A+ GTGKTA+FV+P L
Sbjct: 42  LEFEDMRLGRELLMGIFEAGFEKPSPIQEEAIPVALTKQDILARAKNGTGKTAAFVIPSL 101

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  + +++    L+L PTRELA Q A   +  GK+  + V +  GG   +    +L 
Sbjct: 102 QQIDVAKPKIQ---ALLLVPTRELALQTAQVCKILGKHMGVQVMVTTGGTTLKDDIIRLS 158

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               VL+ TPGRILD   +    ++   + V+DEAD++L   F P ++ + S +P  RQ 
Sbjct: 159 DTVHVLVGTPGRILDLAGKNVADLSECPVFVMDEADKLLSPEFAPVMEQLLSFLPSERQV 218

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  +++P  I +    +     ++     Y +  +K   L  L  
Sbjct: 219 MLFSATFPMIVKDFKDKHMRSPYEINLMEELTLRGVTQY---YAYVEERQKVHCLNTLF- 274

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q  R ++  +F+ G  + +V
Sbjct: 275 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHDFRNGVCRNLV 334

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  LV  ED  ++  I
Sbjct: 335 CSDLLTRGIDIQAVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINLVTYEDRFNLYKI 394

Query: 361 EK 362
           E+
Sbjct: 395 EQ 396


>gi|1170508|sp|P41381|IF4A8_TOBAC RecName: Full=Eukaryotic initiation factor 4A-8; Short=eIF-4A-8;
           AltName: Full=ATP-dependent RNA helicase eIF4A-8
 gi|475219|emb|CAA55639.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
 gi|475221|emb|CAA55640.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
          Length = 413

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 196/379 (51%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G  + +    L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 102 LDYGLVQCQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAAG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + + + V+DEAD ML  GF   I +I  ++P   Q  +
Sbjct: 159 VHVIVGTPGRVFDMLRRQSLRPDYLRMFVLDEADEMLSRGFKDQIYDIFQMLPTKVQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E   ++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALDITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V  +D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K     ++ L  +++ L
Sbjct: 394 IQKFYNVIIEELPSNVADL 412


>gi|319787050|ref|YP_004146525.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
 gi|317465562|gb|ADV27294.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 458

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 141/381 (37%), Positives = 216/381 (56%), Gaps = 9/381 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  L LSP ++  +   GY   TPIQ +++P +L   D+   A TG+GKTA+F L +L 
Sbjct: 3   DFVSLPLSPALLPGLDALGYTAATPIQAQSLPPILDGRDLLAQAPTGSGKTAAFGLGLLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+   +R    + L+L PTRELA QV     +      NL +++L GG+  E Q   LE
Sbjct: 63  RLDPAESRC---QALVLCPTRELADQVGRQLRRLATGIPNLKLSVLTGGMALEPQIASLE 119

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGR+ +   +  L +  +  LV+DEADRMLDMGF   ++ I +     RQ
Sbjct: 120 AHDPQVVVGTPGRVQELARKRVLHLGVVRTLVLDEADRMLDMGFEEPVREIANRCHGQRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  D +++++   L++P  + V     +A  IE  F    AQ+ +K A+   LL
Sbjct: 180 TLLFSATFPDSIRELARQLLRDPVEVSVEG-GESAPDIEQRFFDVDAQFRQK-AVAGLLL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +   ++ ++FCN +K+V  +  SL + GFS  A+HG+++QR R ++L      +  ++
Sbjct: 238 RYRP--ESAVVFCNTRKDVDEVAGSLRQFGFSALALHGDMEQRDRDEVLLQLANRSCNVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+ D+  V N+++P   + Y HRIGRTGRAGR G A +LVA  +    + 
Sbjct: 296 VASDVAARGLDVEDLAAVVNYELPTDVDAYRHRIGRTGRAGRRGLALSLVAGRENARAEM 355

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           I    +      N  L++  P
Sbjct: 356 IAAAQDSPPPRENAPLATGRP 376


>gi|224006724|ref|XP_002292322.1| DEAD/DEAH box RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220971964|gb|EED90297.1| DEAD/DEAH box RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 663

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 130/377 (34%), Positives = 204/377 (54%), Gaps = 27/377 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+   P ++ A+      +PTPIQ++ + + L   D+ GIA TG+GKT SF LP++  
Sbjct: 219 FGDMAFPPPIMEALKKKNVKRPTPIQMQGLTVALSGRDMVGIAFTGSGKTLSFSLPLVMA 278

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQ---VADNF-----EKYGKNYNLTVALLIGG 109
             +  AR+ +     P  ++L P+RELA Q   V   F     E  G+  ++   LLIGG
Sbjct: 279 ALEEEARMPLVPGEGPVGIVLAPSRELARQTYEVVTEFCTALTESGGRYPSIRSQLLIGG 338

Query: 110 IPFEAQNKKL-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
                Q +   ++G   ++ TPGR+ D   +  + ++    + +DEADRMLD+GF   + 
Sbjct: 339 ESARDQLQPFRDKGVHCVVATPGRLRDFLKKRSINLDICRYICLDEADRMLDLGFDEEVG 398

Query: 169 NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
            I +     RQT+L+SAT   + Q  ++  L  P  + VN   + A  ++   V    +Y
Sbjct: 399 EIMNHFHHQRQTILYSATFPKKFQDFAKQTLVRP--VVVNVGRAGAANLD---VIQEVEY 453

Query: 229 SKKCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
            K+ A +  LL+  Q T    +IFC +K +V ++   L  +G    +IHG  DQ  R + 
Sbjct: 454 VKQEAKIVYLLECLQKTAPPVVIFCEKKGDVDDIHEYLLLKGVEAVSIHGGKDQEERNEA 513

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           ++ +K G   ++VA+D+AA+GLD  D+ HV NFD+P+  ENY+HRIGRTGR G+ G A T
Sbjct: 514 IALYKAGKKDVLVATDIAAKGLDFADIQHVINFDMPSEIENYVHRIGRTGRCGKTGVATT 573

Query: 348 LVAKE-------DIKHI 357
            + K        D+KH+
Sbjct: 574 FINKSCEETTLLDLKHL 590


>gi|167386672|ref|XP_001737862.1| ATP-dependent RNA helicase DDX50 [Entamoeba dispar SAW760]
 gi|165899191|gb|EDR25838.1| ATP-dependent RNA helicase DDX50, putative [Entamoeba dispar
           SAW760]
          Length = 689

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 124/347 (35%), Positives = 185/347 (53%), Gaps = 9/347 (2%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV-RMPRTLILEPTREL 84
           PIQ+ T   +  R DV G AQTG+GKT SF LP++  L     R  + PR + L PTREL
Sbjct: 92  PIQVSTYSPIYYRKDVVGKAQTGSGKTISFTLPLMERLRAENERKGKNPRVICLSPTREL 151

Query: 85  AAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLM 144
           A Q+A+ F +        V  + GG+  + Q  KL+ G DV++ TPGR+ D F+R  L +
Sbjct: 152 AIQIAEEFTQCSCG-KFKVICVYGGVDIQGQINKLQSGVDVIVGTPGRVRDLFDRQFLKL 210

Query: 145 NNIEILVIDEADRMLDMGFIPYIQNITSLV------PFTRQTLLFSATMTDELQKVSENF 198
           ++IE +V+DEAD ML++GF   +  I   V        T QTLLFSATM   ++++SE +
Sbjct: 211 DSIETIVLDEADEMLNIGFKEEVTQIMDFVHGSVPKESTVQTLLFSATMPAWVKEISEKY 270

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           L++   +   T  +T        +A    Y  K   +  L++        I+FC+ K   
Sbjct: 271 LRDDAEVIDVTVGNTQVPKNAKHLACRIFYQSKTQTIADLIRVYGRTGRTIVFCDTKAEC 330

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
            + C       F    +HG+I Q+ R + L+ F+E    ++VA+D+AARGLDI  V  + 
Sbjct: 331 TD-CAIAINPIFECQQLHGDIQQKQREQTLNGFRENKFNVLVATDVAARGLDISGVDLII 389

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
              VP     Y+HR GRT RAG+ G   TL  ++++  +  IE  I+
Sbjct: 390 MTHVPKDIPQYVHRAGRTARAGKEGTTITLFTRKELPQLQLIENRIK 436


>gi|119471850|ref|XP_001258227.1| DEAD box RNA helicase (Hca4), putative [Neosartorya fischeri NRRL
           181]
 gi|134034072|sp|A1DNF9|DBP4_NEOFI RecName: Full=ATP-dependent RNA helicase dbp4
 gi|119406379|gb|EAW16330.1| DEAD box RNA helicase (Hca4), putative [Neosartorya fischeri NRRL
           181]
          Length = 810

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 132/391 (33%), Positives = 214/391 (54%), Gaps = 24/391 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F+DL LS      +  + Y   T IQ + I   L+  DV G A+TG+GKT +F++P+L  
Sbjct: 49  FSDLPLSEPTASGLASSHYKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPVLEN 108

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  K  A       LIL PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L R
Sbjct: 109 LYRKQWAEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLKEEQERLGR 168

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++  L    N+++LV+DEADR+LD+GF   +  I   +P  RQT
Sbjct: 169 -MNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIIGHLPKERQT 227

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT T ++  ++   LQ+P+ + V+  +S+A    ++  +V T     +K  +L   
Sbjct: 228 LLFSATQTKKVSDLARLSLQDPEYVAVHETASSATPSKLQQHYVIT--PLPQKLDILWSF 285

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++S    K  ++F +  K V  +  S    + G  +  +HG   Q  R+ I++ F +   
Sbjct: 286 IRSNLKSKT-MVFLSSGKQVRFVYESFRHLQPGIPLMHLHGRQKQGGRLDIVTRFSQSKH 344

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++ ++D+AARGLD P V  V   D P  A+ YIHR+GRT R  R G+A   +   + + 
Sbjct: 345 CVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYEREGRAVLFLDPSEEEG 404

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
           +  +++L +KKV            P+EKI+I
Sbjct: 405 M--LKRLEQKKV------------PIEKINI 421


>gi|154245535|ref|YP_001416493.1| DEAD/DEAH box helicase domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154159620|gb|ABS66836.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus
           Py2]
          Length = 609

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 190/343 (55%), Gaps = 6/343 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P +  A+ +  Y  PTP+Q+  +       D+   AQTG+GKT ++ L M   L     R
Sbjct: 5   PALARALAERDYNDPTPVQLAVLAPEASGRDLLVSAQTGSGKTVAYGLAMADTLLGTDER 64

Query: 70  ---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
                 P+ L++ PTRELA QV   FE         +   +GG+    + + L RGA ++
Sbjct: 65  FGPATAPQALVVAPTRELALQVQREFEWLYAATGARIVSCVGGMDPRQEQRALSRGAHMV 124

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+ DH  RG+L ++ + ++V+DEAD MLD+GF   +Q I    P  R++LLFSAT
Sbjct: 125 VGTPGRLRDHLERGRLDISAVRVVVLDEADEMLDLGFREDLQFILDATPPERRSLLFSAT 184

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
           +   +  +++ + +   RIEV +       IE+  +    +  +   +   +L+  D   
Sbjct: 185 LPRGITMLAKRYQREALRIEVASAEGGHADIEYRAMRVVPKEIEHAVV--NVLRFYDA-P 241

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + I+FCN ++ V +L  +L+++ FS  A+ G + Q  R   L   ++G  ++ VA+D+AA
Sbjct: 242 SAIVFCNTRETVRHLHATLQERQFSAVALSGELSQNERNSALQALRDGRARVCVATDVAA 301

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           RG+D+P +G V + D+PN AE+  HR GRTGRAGR G +  LV
Sbjct: 302 RGIDLPSLGLVIHADLPNDAESLQHRSGRTGRAGRKGVSVLLV 344


>gi|109089499|ref|XP_001110939.1| PREDICTED: nucleolar RNA helicase 2-like isoform 3 [Macaca mulatta]
          Length = 783

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 131/355 (36%), Positives = 201/355 (56%), Gaps = 21/355 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ KT   V    D+   A+TGTGKT SF +P++  
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247

Query: 63  LE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L    + R R R P+ L+L PTRELA QV+ +F    K   L+VA   GG P+  Q +++
Sbjct: 248 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 305

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   GKL +  ++ +V+DE D+MLDMGF   ++ I S V + + 
Sbjct: 306 RNGIDILVGTPGRIKDHIQSGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILS-VAYKKD 364

Query: 179 -----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSK 230
                QTLLFSAT    +  V++ ++++  +++++       TA T+EH  +A    +++
Sbjct: 365 SEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEH--LAIKCHWTQ 422

Query: 231 KCALLQQLLQSQDTMKN-GIIFCNQKKNVVNLCH-SLEKQGFSVCAIHGNIDQRSRMKIL 288
           + A++  +++     +   IIFC  KK    L   S  KQ     ++HG+I Q+ R   L
Sbjct: 423 RAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ--DAQSLHGDIPQKQREITL 480

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
             F+ G+  ++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 481 KGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTG 535


>gi|323465937|gb|ADX69624.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus
           helveticus H10]
          Length = 453

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/365 (35%), Positives = 200/365 (54%), Gaps = 11/365 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  + P +   +    + KPT +Q K IP +L    V   A TG+GKT ++++P+   
Sbjct: 5   FADSRIKPAIQEGLKKIHFEKPTKVQEKVIPAMLSDLSVVVQAATGSGKTHAYLVPIFNE 64

Query: 63  LEKGRARVRMPRTLILEPTRELA---AQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +++    V+   TL   P+RELA    QVA    +     + ++A L GG   E Q +K 
Sbjct: 65  IDEDAHYVQAIVTL---PSRELADQLYQVARQL-RDAAEMHFSIAHLAGGTDRERQLEKY 120

Query: 120 ERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +     ++I TPGR+LD   +   +++ ++  VIDEAD  LDMGF+  I  + S +P   
Sbjct: 121 QNNTPQLVIATPGRLLDFVQKKVFVVDQVKTFVIDEADMTLDMGFLADIDQVASKMPKDV 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q   FSAT+  +L      ++ +P +I ++ PS  A TI++  +   ++ ++K  L + L
Sbjct: 181 QIAAFSATIPVKLSNFLRKYMAHPDQIVIDNPSIIAPTIKNDLLDIGSK-NRKSVLYKLL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q  +   ++F N K+ V  L   L+ QG  V  IHG + +R R + L   ++G  Q 
Sbjct: 240 TMGQPYL--ALVFANTKQTVDELTRYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQFQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARGLDI  V  V N+++P   E  IHRIGRTGR G  G A TL+ +E++  I+
Sbjct: 298 VVASDLAARGLDIDGVSLVINYEIPRDIEFVIHRIGRTGRNGLSGHAITLIREEEMNRIE 357

Query: 359 AIEKL 363
            +EK+
Sbjct: 358 DLEKM 362


>gi|261204964|ref|XP_002627219.1| eukaryotic initiation factor 4A [Ajellomyces dermatitidis SLH14081]
 gi|239592278|gb|EEQ74859.1| eukaryotic initiation factor 4A [Ajellomyces dermatitidis SLH14081]
 gi|239611568|gb|EEQ88555.1| eukaryotic initiation factor 4A [Ajellomyces dermatitidis ER-3]
 gi|327348420|gb|EGE77277.1| ATP-dependent RNA helicase eIF4A [Ajellomyces dermatitidis ATCC
           18188]
          Length = 398

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 213/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L  +++  V   G+ +P+ IQ + I  V++  DV   AQ+GTGKTA+F    ++ 
Sbjct: 27  FDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATF---SISA 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    ++  + LIL PTRELA Q+       G   ++     IGGI      K L+ G
Sbjct: 84  LQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSIECHACIGGISVREDMKALQEG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 144 PQVVVGTPGRVHDMIERRVLKTDHLKMFVLDEADEMLSHGFTEQIYDIFQLLPQSTQVVL 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 204 LSATMPQDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG+++Q+ R  I+  F+ G+ ++++A+
Sbjct: 263 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQQQRDIIMKEFRSGSSRVLIAT 321

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 322 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 381

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 382 FYSTQIEEMPMNVADL 397


>gi|71999644|ref|NP_741348.2| hypothetical protein Y94H6A.5 [Caenorhabditis elegans]
 gi|51536859|gb|AAU05555.1| Hypothetical protein Y94H6A.5a [Caenorhabditis elegans]
          Length = 825

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 117/355 (32%), Positives = 190/355 (53%), Gaps = 3/355 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +  +GL   V  A+   G+ +PTPIQ KTIP ++   DV  +++TG+GKTA+FV+PML  
Sbjct: 26  WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  R      R L++ PTRELA Q     ++ G+   L  A L+GG   E Q   +   
Sbjct: 86  LK--RRDTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHEN 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+L       L ++ ++ +V DEADR+ +MGF   +      +P +RQTLL
Sbjct: 144 PDILLATPGRLLHVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIPESRQTLL 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L   ++  L +P  + ++     ++ +   F        K  ALL    +  
Sbjct: 204 FSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPD-EKLFALLHLCRRMD 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  ++FC   K+V  +   L + G     ++  +D  +R   +  F E    ++V +
Sbjct: 263 RENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKMNIQKFHEKQNNILVVT 322

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           D+AARG+DIP +  V N   P +A+ ++HR+GR  RAGR G A +L+A +++ ++
Sbjct: 323 DVAARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSGTAISLIANDELPYL 377


>gi|22328183|ref|NP_191975.2| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|30678703|ref|NP_849535.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|75330763|sp|Q8RXK6|RH8_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 8
 gi|19423939|gb|AAL87312.1| putative RNA helicase [Arabidopsis thaliana]
 gi|21280839|gb|AAM45033.1| putative RNA helicase [Arabidopsis thaliana]
 gi|332656515|gb|AEE81915.1| DEAD-box ATP-dependent RNA helicase 8 [Arabidopsis thaliana]
 gi|332656516|gb|AEE81916.1| DEAD-box ATP-dependent RNA helicase 8 [Arabidopsis thaliana]
          Length = 505

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 199/361 (55%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P+L 
Sbjct: 132 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLE 191

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++    ++    +I+ PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 192 KIDQDNNVIQ---AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQ 248

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P ++++ S +P +RQ L
Sbjct: 249 PVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQIL 308

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++   + FL NP  I +     T + I   +   + +  +K   L  L  S
Sbjct: 309 MFSATFPVTVKDFKDRFLTNPYVINL-MDELTLKGITQFY--AFVEERQKIHCLNTLF-S 364

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 365 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 424

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 425 TDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 484

Query: 362 K 362
           +
Sbjct: 485 Q 485


>gi|29833596|ref|NP_828230.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680]
 gi|29610720|dbj|BAC74765.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 498

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 181/347 (52%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L  +++  +   G  +P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 59  FGELDLPAELLKTLTSLGVNEPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLVR 118

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  LIL PTRELA QV D    Y +   L +A ++GG+    Q   L  G
Sbjct: 119 TAGQRAEARKPLALILVPTRELAQQVTDALTPYAQLLKLRLATVVGGMSIGRQASALRAG 178

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D   R    ++ + I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 179 AEVVVATPGRLADLIERKDCRLDRVSITVLDEADQMADMGFMPQVTELLDQVRPDGQRML 238

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  + T  T+EH  +  +   + K A   ++    
Sbjct: 239 FSATLDRNIDLLVRRYLHDPVVHSVDPSAGTVTTMEHHVL--HVHGTDKFATATEIAARD 296

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   ++F + K  V      L   G    A+HG   Q  R + L+ F+ G I  +VA+
Sbjct: 297 GRV---LMFLDTKHAVDQFTKHLLGSGVKAAALHGGKSQPQRTRTLAQFRTGDITALVAT 353

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARG+ + D+  V N D P+  ++Y+HR GRT RAG  G   TLV
Sbjct: 354 NVAARGIHVDDLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTLV 400


>gi|303844|dbj|BAA02152.1| eukaryotic initiation factor 4A [Oryza sativa Japonica Group]
 gi|12381900|dbj|BAB21260.1| eukaryotic initiation factor 4A [Oryza sativa]
          Length = 413

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 199/379 (52%), Gaps = 12/379 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 43  FDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     V   + L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 103 LDYA---VVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASG 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 160 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGV 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK---KCALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 220 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLA 279

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N +K V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 280 ITQ-----SVIFVNTRK-VDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     ++ L  +++ L
Sbjct: 394 IQRFYNVVIEELPANVADL 412


>gi|154298930|ref|XP_001549886.1| hypothetical protein BC1G_11712 [Botryotinia fuckeliana B05.10]
 gi|160380630|sp|A6SFV4|DBP8_BOTFB RecName: Full=ATP-dependent RNA helicase dbp8
 gi|150857617|gb|EDN32809.1| hypothetical protein BC1G_11712 [Botryotinia fuckeliana B05.10]
          Length = 545

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 132/389 (33%), Positives = 208/389 (53%), Gaps = 30/389 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L + P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F +P   I
Sbjct: 118 FAALNVKPWLVGSLGSMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVP---I 174

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K          L+L PTRELA Q+ + F+      +L   L+ GG     Q   L + 
Sbjct: 175 LQKWAEDPFGIFALVLTPTRELALQIYEQFKAISSPQSLKAVLITGGSDMRPQATALAQR 234

Query: 123 ADVLICTPGRILDHFNRGKL----LMNNIEILVIDEADRMLDMG----FIPYIQNITSLV 174
             ++I TPGR+ DH           +  + ++V+DEADR+L  G     +P ++   S++
Sbjct: 235 PHIVIATPGRLADHIRTSGEDTIGALRRVRMVVLDEADRLLASGSVGSMLPDVEECLSIL 294

Query: 175 P--FTRQTLLFSATMTDELQKVSENFLQNPKRI-----EVNT-----PSSTAETIEHCFV 222
           P    RQTLLF+AT+T E++ + ++  + P ++     EV+T     P S  +      V
Sbjct: 295 PPPAKRQTLLFTATVTPEVRAL-KDMPRTPGKLPVFVCEVDTQALAIPPSLNQMHLQVPV 353

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                Y     L   LL  ++  K+ +IFCN+      L H L      V A+H  + QR
Sbjct: 354 THREHY-----LHMFLLTEKNLPKSIVIFCNRTATADYLTHLLRLLDHRVTALHSKLPQR 408

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R+  L  F+    +++VA+D+AARGLDIP+VG V N+D+P   ++YIHR+GRT RAGR 
Sbjct: 409 QRIDNLGRFRASAARILVATDVAARGLDIPEVGLVINYDIPRDPDDYIHRVGRTARAGRK 468

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVD-W 370
           G+A + V + D++ I AIE  + ++++ W
Sbjct: 469 GEAVSFVGQRDVQLIQAIENRVGRQMEAW 497


>gi|320163628|gb|EFW40527.1| cytoplasmic DExD/H-box RNA helicase [Capsaspora owczarzaki ATCC
           30864]
          Length = 602

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 118/360 (32%), Positives = 197/360 (54%), Gaps = 7/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++  + + GY  P+PIQ ++IP+ L    V   A+ GTGKTA++++P+L +
Sbjct: 222 FEDYHLKRELLMGIFEKGYENPSPIQEESIPVALAGRHVLARAKNGTGKTAAYLIPLLEM 281

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++ G+  ++    ++L PTRELA Q +   ++ GK+  + V +  GG   +    +L+  
Sbjct: 282 IDTGKPHIQ---AVVLVPTRELALQTSQLCKELGKHMGVKVMVTTGGTSLKDDIIRLQET 338

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             VL+ TPGR +D   +G   +    ++V DEAD++L   F+P  + + +L+P TRQ +L
Sbjct: 339 VHVLVATPGRAVDLAQKGVANVTQARVVVFDEADKLLSPEFLPVAEQMLALLPPTRQVML 398

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           +SAT    ++  S+ +L+N   I +     T + I   +   + +  +K   L  L  S+
Sbjct: 399 YSATFPVSVKDFSDRYLKNAYEINLME-ELTLKGITQYY--AFVEERQKVHCLNTLF-SK 454

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V S
Sbjct: 455 LQINQSIIFCNSVQRVELLARKITELGYSCFYIHAKMLQSHRNRVFHDFRRGACRNLVCS 514

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  IE+
Sbjct: 515 DLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLITYDDRMNLLRIEQ 574


>gi|45185883|ref|NP_983599.1| ACR197Wp [Ashbya gossypii ATCC 10895]
 gi|74694822|sp|Q75BS4|DHH1_ASHGO RecName: Full=ATP-dependent RNA helicase DHH1
 gi|44981673|gb|AAS51423.1| ACR197Wp [Ashbya gossypii ATCC 10895]
          Length = 484

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 135/411 (32%), Positives = 209/411 (50%), Gaps = 19/411 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++  + +AG+ +P+PIQ + IP+ L R D+   A+ GTGKTA+FV+P L I
Sbjct: 31  FEDFYLRRELLMGIFEAGFERPSPIQEEAIPIALARRDILARAKNGTGKTAAFVIPTLEI 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +   + +V   + LI+ PTRELA Q +      GK+  ++  +  GG        +L   
Sbjct: 91  V---KPKVNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIMRLNEP 147

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             VL+ TPGR+LD  +R    ++   + V+DEAD+ML   F   ++ I S +P   Q+LL
Sbjct: 148 VHVLVGTPGRVLDLASRKVADLSECSLFVMDEADKMLSRDFKSLVEQILSFLPQNHQSLL 207

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    +++     L  P  I +     T + I   +   + +  +K   L  L  S+
Sbjct: 208 FSATFPLTVKEFMVKHLNKPYEINL-MDELTLKGITQYY--AFVEERQKLHCLNTLF-SK 263

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   IIFCN    V  L   +   G+S    H  + Q+ R K+   F++G ++ +V S
Sbjct: 264 LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS 323

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+   D  ++  IE+
Sbjct: 324 DLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQ 383

Query: 363 -------LIEKKVD---WLNGDLSSLNPPLEKIDIAQHN-HARKNNPIPQK 402
                   I  ++D   ++  D S++  P   +D  Q N  A +  P PQ+
Sbjct: 384 ELGTEIAAIPAQIDKSLYVAEDTSAVPVPF-PLDTMQGNARAAQQMPHPQQ 433


>gi|313229621|emb|CBY18436.1| unnamed protein product [Oikopleura dioica]
          Length = 962

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 130/389 (33%), Positives = 202/389 (51%), Gaps = 42/389 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D+ L P+++  +    Y KPTPIQ   + ++    D+   AQTG+GKTA+ ++P++  
Sbjct: 532 FSDMKLCPEIMENLQRMKYTKPTPIQQYAVSILGSGSDLMATAQTGSGKTAAMMIPIINY 591

Query: 63  LE------KGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQ 115
           L+      +G    +    +++ PTRELA Q+ D   K+ G+N N+   L  GG     Q
Sbjct: 592 LKMSNIGSRGYNACQKVDCIVVAPTRELATQLYDECYKFCGRNTNVVPGLCYGGTGTREQ 651

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           ++++  G +++I TPGR+ D   +G +  +  + LV+DEADRMLD GF P I+ I + +P
Sbjct: 652 SQRIREGCNIVIGTPGRMKDFLEKGVIDASEAQFLVLDEADRMLDQGFGPDIREINAYLP 711

Query: 176 ----FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 R T LFSAT    +Q  ++++L+ P  I               FVA        
Sbjct: 712 PKDTGKRTTALFSATFETAIQSAAQDYLR-PNYI---------------FVAIGIIGGAN 755

Query: 232 CALLQQLLQ--------------SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
            A+ QQ  Q               Q+  K  +IF   K    +L   L   G     IHG
Sbjct: 756 TAVTQQFEQLQKREKFNRTVEICKQNQGKRTLIFVATKIFADSLGSMLVGDGIKATTIHG 815

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           +  QR R + +++ K   + ++VA+D+AARG+DI DV  V NFD P   E+YIHRIGRT 
Sbjct: 816 DRQQRDREQAINDLKANRMHVLVATDVAARGIDIDDVEVVINFDFPKELESYIHRIGRTA 875

Query: 338 RAGRHGKAFTLV-AKEDIKHIDAIEKLIE 365
           R G+ G A T + A +D +H  ++ K+ +
Sbjct: 876 RKGKKGLAITFIDAMKDRQHASSLVKICQ 904


>gi|302676323|ref|XP_003027845.1| hypothetical protein SCHCODRAFT_70659 [Schizophyllum commune H4-8]
 gi|300101532|gb|EFI92942.1| hypothetical protein SCHCODRAFT_70659 [Schizophyllum commune H4-8]
          Length = 459

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 122/361 (33%), Positives = 192/361 (53%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L  +++  + +AG+ KP+PIQ + IP  LQR D+   A+ GTGKTA+FV+P L 
Sbjct: 41  EFENMYLRRELLMGIFEAGFEKPSPIQEEAIPKALQRRDILARAKNGTGKTAAFVIPTLQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  + +++    L+L PTRELA Q +   +  GK+  + V +  GG   +    +L  
Sbjct: 101 QVDPTKNKIQ---ALLLVPTRELALQTSQVCKILGKHMGIQVMVTTGGTTLKDDILRLNE 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL+ TPGRILD   +    ++   + V+DEAD++L   F P ++ + S +P  RQ +
Sbjct: 158 TVHVLVGTPGRILDLAGKNVADLSQCPVFVMDEADKLLSPEFAPVMEQLLSYLPNDRQVM 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++   E  + NP  I +    +     ++     Y +  +K   L  L  S
Sbjct: 218 LFSATFPMIVKDFKEKHMNNPYEINLMEELTLRGVTQY---YAYVEERQKVHCLNTLF-S 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S    H  + Q  R ++  +F+ G  + +V 
Sbjct: 274 KLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHDFRNGQCRNLVC 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  LV  ED  ++  IE
Sbjct: 334 SDLLTRGIDIQAVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINLVTYEDRFNLYKIE 393

Query: 362 K 362
           +
Sbjct: 394 Q 394


>gi|222423092|dbj|BAH19526.1| AT4G00660 [Arabidopsis thaliana]
          Length = 374

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 121/361 (33%), Positives = 198/361 (54%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P   
Sbjct: 1   EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIP--- 57

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEK      + + +I+ PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 58  VLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQ 117

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P ++++ S +P +RQ L
Sbjct: 118 PVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQIL 177

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++   + FL NP  I +     T + I   +   + +  +K   L  L  S
Sbjct: 178 MFSATFPVTVKDFKDRFLTNPYVINL-MDELTLKGITQFY--AFVEERQKIHCLNTLF-S 233

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 234 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 293

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 294 TDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 353

Query: 362 K 362
           +
Sbjct: 354 Q 354


>gi|225442221|ref|XP_002277703.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 413

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 198/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDSMGLVENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    + +    L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 102 LDYSLVQCQ---ALVLAPTRELAQQIEKVMRALGDYLGVRVHACVGGTSVREDQRILQTG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+   V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLETLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     ++ L  +++ L
Sbjct: 394 IQRFYNVVIEELPSNVADL 412


>gi|19387225|gb|AAL87143.1|AF479824_1 DEAD box RNA helicase Vasa [Melanotaenia fluviatilis]
          Length = 400

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 126/363 (34%), Positives = 201/363 (55%), Gaps = 20/363 (5%)

Query: 45  AQTGTGKTASFVLPMLT-ILEKGRAR-----VRMPRTLILEPTRELAAQVADNFEKYGKN 98
           AQTG+GKTA+F+LP+L  ++  G A      ++ P  +I+ PTREL  Q+     K+   
Sbjct: 4   AQTGSGKTAAFLLPILQQLMADGVAASHFSDIQEPEAIIVAPTRELINQIFLEARKFSYG 63

Query: 99  YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             +   ++ GG+    Q +++ RG +V+  TPGR+LD   RGK+ ++ +  LV+DEADRM
Sbjct: 64  TCVRPVVVYGGVSTGHQIREISRGCNVVCGTPGRLLDLIGRGKIGLSKLRYLVLDEADRM 123

Query: 159 LDMGFIPYIQNITSLVPF----TRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSST 213
           LDMGF P ++ +           RQTL+FSAT  D++Q+++ +F++ +   + V      
Sbjct: 124 LDMGFAPDMRRLVGSPGMPSKENRQTLMFSATYPDDIQRMAADFMKADYLFLAVGIVGGA 183

Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
              +E  F+    ++SK+  LL+ L  +   M+  ++F   K+    +   L ++  S  
Sbjct: 184 CTDVEQTFIQV-TKFSKREQLLELLKTT--GMERTMVFVETKRQADFIAVFLCQEKVSTT 240

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
           +IHG+ +QR R + L +F+ G   ++VA+ +AARGLDIPDV HV NFD+PN  + Y+HRI
Sbjct: 241 SIHGDREQREREQALGDFRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRI 300

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           GRTGR G  G+A +          DA  +L    V  L+     +   LE+   + H  A
Sbjct: 301 GRTGRCGNTGRAISFYDP------DADNQLARSLVTVLSKAQQEVPSWLEESAFSSHGAA 354

Query: 394 RKN 396
             N
Sbjct: 355 AFN 357


>gi|15890807|ref|NP_356479.1| cold-shock dead-box protein A [Agrobacterium tumefaciens str. C58]
 gi|15159093|gb|AAK89264.1| cold-shock dead-box protein A [Agrobacterium tumefaciens str. C58]
          Length = 615

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 120/346 (34%), Positives = 193/346 (55%), Gaps = 6/346 (1%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--E 64
           G++P +  A+   GY   TP+Q   +   L   D    AQTG+GKT +F + + T L  E
Sbjct: 6   GIAPAIAQALEKRGYKDLTPVQQAMLAPELANKDALVSAQTGSGKTVAFGIALATTLLSE 65

Query: 65  KGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
             R  +   P  L + PTRELA QV    E   +   +++A  +GG+    + + LERGA
Sbjct: 66  NTRFGQASAPLALAIAPTRELAMQVKRELEWLYEFAGVSIASCVGGMDIRNERRALERGA 125

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            +++ TPGR+ DH  R  L +++I  +V+DEAD MLD+GF   ++ I    P  R+TL+F
Sbjct: 126 HIVVGTPGRLCDHIKRNALDLSSIRAVVLDEADEMLDLGFREDLEFILEESPDDRRTLMF 185

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT+   + K++E++ +N  RI   T S   + ++  + A     S +   +   L+  +
Sbjct: 186 SATVPRSIAKLAESYQKNAVRIA--TASEQKQHVDIEYRALLVSPSDRENAIINALRFYE 243

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +N I+FC+ +  V +L   L  +GFSV A+ G + Q  R   L   ++G  ++ VA+D
Sbjct: 244 A-RNAIVFCSTRAAVNHLTARLNNRGFSVVALSGELTQNERTHALQAMRDGRARVCVATD 302

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +AARG+D+P +  V + D+P  +E  +HR GRTGRAG+ G +  +V
Sbjct: 303 VAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGQKGVSAIVV 348


>gi|262201425|ref|YP_003272633.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
 gi|262084772|gb|ACY20740.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
           43247]
          Length = 491

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 121/353 (34%), Positives = 184/353 (52%), Gaps = 17/353 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+  ++V  +   G  +  PIQ  T+   L+  DV G  +TG+GKT +F +P++  
Sbjct: 4   FESLGVPAELVKVLAAEGKTEAFPIQQDTLGDTLEGKDVLGRGKTGSGKTLAFSIPLVA- 62

Query: 63  LEKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
              G A + +PR       L+L PTRELA Q+A   E   +   L V  + GG+    Q 
Sbjct: 63  ---GLAEMEVPRKPGAPTGLVLAPTRELATQIARVVEPLAEAVGLRVTTVFGGVKQTRQE 119

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +   RG D+++  PGR+ D   +G + ++++EI VIDEAD M D+GF+P +  I +  P 
Sbjct: 120 QAFRRGVDIVVACPGRLDDLMRQGIVTLDDVEITVIDEADHMADLGFLPVVTRILAATPA 179

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALL 235
             Q +LFSAT+ + + K++  FL NP    V+  +S  A    H F       S K AL+
Sbjct: 180 DGQRMLFSATLDNGVDKLARRFLDNPTMHSVDEANSPVAAMTHHVF---EVSPSDKAALI 236

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +L          I+F   K     L   L + G     +HGN+ Q  R + L  F  G 
Sbjct: 237 TELASGAGRR---ILFMRTKHQAKKLARKLTEDGIPAVDLHGNLSQAQRDRNLGAFGAGD 293

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           ++++VA+D+AARG+ + D+  V + D PN  + Y+HR GRT RAG  G   T+
Sbjct: 294 VRVLVATDVAARGVHVDDIELVVHVDPPNEHKAYLHRSGRTARAGSAGDVVTV 346


>gi|241047288|ref|XP_002407236.1| translation initiation factor 4F, helicase subunit, putative
           [Ixodes scapularis]
 gi|215492155|gb|EEC01796.1| translation initiation factor 4F, helicase subunit, putative
           [Ixodes scapularis]
          Length = 422

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 134/380 (35%), Positives = 208/380 (54%), Gaps = 11/380 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F    + 
Sbjct: 50  NFDDMSLREELLRGIYAYGFEKPSAIQQRAIIPCIKGMDVIAQAQSGTGKTATF---SIA 106

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    ++  + LIL PTRELA Q+       G   N      IGG       +KLE+
Sbjct: 107 ILQQIDMALKECQALILAPTRELAQQIQKVVIALGDYMNAQCHACIGGTNVREDIRKLEK 166

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G   ++ TPGR+ D  +R  L  NNI I V+DEAD ML  GF   I ++   +    Q +
Sbjct: 167 GVHTVVGTPGRVFDMISRKALRTNNIRIFVLDEADEMLSRGFKDQIYDVFRTLNSNIQVI 226

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQL 238
           L SATM  ++  V++ F++NP RI V     T E I+  +VA   +  K    C L + L
Sbjct: 227 LLSATMPSDVLDVTKCFMRNPIRILVKKEELTLEGIKQFYVAVDREEWKLDTLCDLYETL 286

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                T+   +IFCN ++ V  L   + ++ F+V A+HG++ Q+ R  I+  F+ G+ ++
Sbjct: 287 -----TITQAVIFCNTRRKVDWLTEKMHERDFTVSALHGDMGQKERDVIMREFRSGSSRV 341

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +DL ARG+D+  V  V NFD+P   ENYIHRIGR GR GR G A   V +ED + + 
Sbjct: 342 LITTDLLARGIDVQQVSLVINFDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRTLK 401

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            IE     +++ +  +++ L
Sbjct: 402 DIEGFYNTEIEEMPMNVADL 421


>gi|225681783|gb|EEH20067.1| ATP-dependent RNA helicase dbp8 [Paracoccidioides brasiliensis
           Pb03]
          Length = 546

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 135/384 (35%), Positives = 202/384 (52%), Gaps = 18/384 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL+P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F  P   
Sbjct: 117 SFATLGLAPWLVGSLSTMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAFAAP--- 173

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL+K          ++L PTRELA Q+ +  +      +L   L+ GG     Q   L +
Sbjct: 174 ILQKWSEDPFGIFAVVLTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIALSQ 233

Query: 122 GADVLICTPGRILDHFN---RGKLL-MNNIEILVIDEADRMLDMGFIPYIQNI----TSL 173
              V+I TPGR+ DH N   R  +  +N    +V+DEADR+L+ G    + ++    ++L
Sbjct: 234 RPHVVIATPGRLADHINSSGRDTICGLNRARFVVLDEADRLLESGPGSMLADLETCLSAL 293

Query: 174 VPFT-RQTLLFSATMTDELQ--KVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQY 228
            P T RQTLLF+AT+T E++  K        P        +    TI      +Y     
Sbjct: 294 PPSTARQTLLFTATVTPEVRALKSMPRPASKPPIFVTEISTENQATIPRTLKQSYLLVPL 353

Query: 229 SKKCALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
           + + A L  LL +  ++ K  IIFCN  K    L   L + G    ++H  + Q  R   
Sbjct: 354 THREAFLHVLLSTDGNSSKAAIIFCNHTKTADLLERMLRRLGHRATSLHSLLPQSERTAN 413

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           LS F+    +++VA+D+AARGLDIP V  V NF VP   ++Y+HR+GRT RAGR G+A T
Sbjct: 414 LSRFRASAARILVATDVAARGLDIPSVSLVINFGVPRNPDDYVHRVGRTARAGREGEAVT 473

Query: 348 LVAKEDIKHIDAIEKLIEKKV-DW 370
           LV + D++ + AIE  + +K+ +W
Sbjct: 474 LVGQRDVQLVLAIEDRVGRKMEEW 497


>gi|67484120|ref|XP_657280.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|167395584|ref|XP_001741647.1| ATP-dependent RNA helicase eIF4A [Entamoeba dispar SAW760]
 gi|56474536|gb|EAL51901.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
 gi|165893771|gb|EDR21906.1| ATP-dependent RNA helicase eIF4A, putative [Entamoeba dispar
           SAW760]
          Length = 391

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 113/366 (30%), Positives = 197/366 (53%), Gaps = 5/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G+  +++ ++   G+ KP+ IQ + I  ++Q  ++   AQ+GTGKTA+F    + +
Sbjct: 20  FDAMGIKDELLRSIYSYGFEKPSAIQQRAIVPLMQGRNLIAQAQSGTGKTAAF---SIGV 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++     ++ + ++L PTRELA Q  +  +   +  ++     IGG       + L  G
Sbjct: 77  LQQIDTNSKVCQAILLSPTRELALQTQEVVKNLSQYLDIKTFACIGGTSVRETIEALRNG 136

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+LD  +R  +  N ++ L++DEAD ML  GF   +  I   +P T Q  +
Sbjct: 137 VQVVVGTPGRVLDMLDRQAIDPNTVKYLILDEADEMLSQGFKDQMYTILKSLPSTVQVGM 196

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  +   +S+ F++NP +I V     T E I+  ++       K   L+   L   
Sbjct: 197 FSATMPADALDISKKFMENPVKILVKKEELTLEGIKQFYIDVVKDEYKIDTLID--LYQV 254

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            ++   +IFCN K  V  +   L+   + V   HG++    R  +L+ F++G  ++++ +
Sbjct: 255 ISVNQSVIFCNSKNRVEWIQRRLQAHNYPVSITHGDLTMEERNNVLNEFRQGATRILITT 314

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ +RG+D+  V  V NFD+P   E+YIHRIGR+ R GR G A   +  E++  I+ ++K
Sbjct: 315 DMLSRGIDVQQVSLVINFDMPVSDESYIHRIGRSARFGRKGVAIDFITTEEMDTINRLQK 374

Query: 363 LIEKKV 368
             E K+
Sbjct: 375 TYETKI 380


>gi|15241726|ref|NP_201025.1| PRH75; ATP-dependent helicase/ DEAD/H-box RNA helicase binding
           [Arabidopsis thaliana]
 gi|108861902|sp|Q39189|RH7_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 7
 gi|8809632|dbj|BAA97183.1| RNA helicase [Arabidopsis thaliana]
 gi|15810145|gb|AAL07216.1| putative RNA helicase [Arabidopsis thaliana]
 gi|30793911|gb|AAP40408.1| putative DEAD/DEAH box RNA helicase PRH75 [Arabidopsis thaliana]
 gi|332010196|gb|AED97579.1| DEAD-box ATP-dependent RNA helicase 7 [Arabidopsis thaliana]
          Length = 671

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 130/335 (38%), Positives = 181/335 (54%), Gaps = 18/335 (5%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV-------RMPRTLIL 78
           PIQ  T  +VL   D+ G A+TG GKT +FVLP+L  L  G A+        R P  L+L
Sbjct: 121 PIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVL 180

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QVA +F+ YG +  L+   L GG  +  Q  KL+RG D+++ TPGRI DH  
Sbjct: 181 LPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIE 240

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--QTLLFSATMTDELQKVSE 196
           R  L  + ++  V+DEAD ML MGF+  ++ I   V  +   QTLLFSAT+   ++ +S 
Sbjct: 241 RQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISN 300

Query: 197 NFLQ-NPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
            FL+ + K I++  N     + ++ H  +A     +    L+  ++    +    IIF  
Sbjct: 301 RFLKRDQKTIDLVGNDKMKASNSVRH--IAIPCNKAAMARLIPDIISCYSSGGQTIIFAE 358

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            K  V  L   L+       A+HG I Q  R   L+ F+ G    +VA+++AARGLDI D
Sbjct: 359 TKVQVSELSGLLDGSR----ALHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDIND 414

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           V  +   + P   E YIHR GRTGRAG  G A TL
Sbjct: 415 VQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTL 449


>gi|47206275|emb|CAF95815.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 586

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 122/343 (35%), Positives = 189/343 (55%), Gaps = 22/343 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ +   ++  +  + Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 142 FQDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQ 201

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I   G                  A Q   +  ++     +   ++ GG     Q + LER
Sbjct: 202 IYTDGPGD---------------ALQAIKSSGQFAYRSRVRPCVVYGGADIGQQIRDLER 246

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---SLVP-FT 177
           G  +L+ TPGR++D   RGK+ ++    LV+DEADRMLDMGF P I+ I    ++ P   
Sbjct: 247 GCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGI 306

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSAT   E+Q ++ +FL++   + V    ST+E I    V  + +   K + L  
Sbjct: 307 RQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVV--WVEELDKRSFLLD 364

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL +       ++F   KK    L   L ++G++  +IHG+  QR R + L  F+ G   
Sbjct: 365 LLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCP 424

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G
Sbjct: 425 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG 467


>gi|145240499|ref|XP_001392896.1| ATP-dependent RNA helicase dbp4 [Aspergillus niger CBS 513.88]
 gi|134034071|sp|A2QS00|DBP4_ASPNC RecName: Full=ATP-dependent RNA helicase dbp4
 gi|134077418|emb|CAK45672.1| unnamed protein product [Aspergillus niger]
          Length = 802

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 127/372 (34%), Positives = 203/372 (54%), Gaps = 12/372 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DL LS      +  + Y   T IQ + I   L+  D+ G A+TG+GKT +F++P+L  
Sbjct: 49  FTDLPLSEPTASGLASSHYKTLTDIQSRAISHALKGRDILGAAKTGSGKTLAFLIPILEN 108

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  K  +       L+L PTRELA Q+ +   K G+ +  +  L+IGG     + ++L R
Sbjct: 109 LYRKQWSEHDGLGALVLSPTRELAIQIFEVLRKVGRYHTFSAGLVIGGKSLREEQERLGR 168

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++      +N+++LV+DEADR+LDMGF   +  I   +P  RQT
Sbjct: 169 -MNILVCTPGRMLQHLDQTSFFETHNLQMLVLDEADRILDMGFQKTVDAIIGHLPKERQT 227

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT T ++  ++   LQ+P+ + V+  +S+A    ++  +V T     +K  +L   
Sbjct: 228 LLFSATQTKKVSDLARLSLQDPEYVAVHEAASSATPSKLQQHYVVT--PLPQKLDVLWSF 285

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++S    K  I+F +  K V  +  S    + G  +  +HG   Q  R+ I + F     
Sbjct: 286 IRSNLKSKT-IVFLSSGKQVRFVYESFRHMQPGVPLMHLHGRQKQGGRLDITTKFSSAQH 344

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++ A+D+AARGLD P V  V   D P  A+ YIHR+GRT R  R G+A   +   + K 
Sbjct: 345 AVLFATDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEKG 404

Query: 357 IDAIEKLIEKKV 368
           +  +++L +KKV
Sbjct: 405 M--LKRLEQKKV 414


>gi|171681521|ref|XP_001905704.1| hypothetical protein [Podospora anserina S mat+]
 gi|170940719|emb|CAP65947.1| unnamed protein product [Podospora anserina S mat+]
          Length = 540

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 191/362 (52%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F D GL   ++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 31  MEFEDFGLKRSLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVIPAL 90

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +K   ++   + LIL PTRELA Q +   +  GK+  + V +  GG        +L+
Sbjct: 91  ---QKINPKINKIQCLILVPTRELAMQTSQVCKTLGKHLGVNVMVTTGGTGLRDDIVRLQ 147

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +    ++   + ++DEAD++L   F P I+ +    P  RQ 
Sbjct: 148 DPVHIVVGTPGRILDLAGKQVADLSECPMFIMDEADKLLSAEFTPVIEQLLQFHPKDRQV 207

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++  S+  ++ P  I +     T   I   +   Y +  +K   L  L  
Sbjct: 208 MLFSATFPISVKDFSDKNMKEPYEINL-MDELTLRGITQYYA--YVEEKQKVHCLNTLF- 263

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 264 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMQQHARNRVFHDFRNGVCRNLV 323

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 324 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNI 383

Query: 361 EK 362
           E+
Sbjct: 384 ER 385


>gi|58336753|ref|YP_193338.1| RNA helicase [Lactobacillus acidophilus NCFM]
 gi|227903314|ref|ZP_04021119.1| ATP-dependent RNA helicase [Lactobacillus acidophilus ATCC 4796]
 gi|58254070|gb|AAV42307.1| RNA helicase [Lactobacillus acidophilus NCFM]
 gi|227868943|gb|EEJ76364.1| ATP-dependent RNA helicase [Lactobacillus acidophilus ATCC 4796]
          Length = 453

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 127/364 (34%), Positives = 198/364 (54%), Gaps = 9/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  ++P +   +    +VKPT +Q K IP +L    V   A TG+GKT ++++P+   
Sbjct: 5   FEDSRINPALQEGLKKINFVKPTKVQEKVIPAMLSDLSVVVQAATGSGKTHAYLVPIFNE 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKY--GKNYNLTVALLIGGIPFEAQNKKLE 120
           +++    V+   TL   P+RELA Q+     K       + ++A L GG   E Q +K +
Sbjct: 65  IDEAAHYVQAIVTL---PSRELADQLYQVARKLRDAAGMHFSIAHLAGGTDRERQLEKYQ 121

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++I TPGR+LD   +    ++ ++  VIDEAD  LDMGF+  I  + S +P   Q
Sbjct: 122 NNTPQLVIATPGRLLDFVQKKVFAVDQVKTFVIDEADMTLDMGFLSDIDQVASKMPKDVQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSAT+  +L      ++ +P +I ++ PS  A TI++  +   ++  +K  L + L 
Sbjct: 182 IAAFSATIPVKLSNFLRKYMAHPDQIVIDNPSIIAPTIKNDLIDIGSK-DRKNVLYKVLT 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  +   ++F N K+ V  L   L+ QG  V  IHG + +R R + L   ++G  Q +
Sbjct: 241 MGQPYL--ALVFANTKQKVDELTKFLQDQGLKVAKIHGGVTERERKRTLRQVEQGQYQYV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASDLAARGLDI  V  V N+++P   E  IHRIGRTGR G  G A TL+ +E++  I+ 
Sbjct: 299 VASDLAARGLDIDGVSLVVNYEIPRDIEFVIHRIGRTGRNGLSGHAVTLIREEEMNRIED 358

Query: 360 IEKL 363
           +EK+
Sbjct: 359 LEKM 362


>gi|240276504|gb|EER40016.1| ATP-dependent RNA helicase DBP2 [Ajellomyces capsulatus H143]
          Length = 426

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 109/298 (36%), Positives = 174/298 (58%), Gaps = 3/298 (1%)

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
           P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L RG +V I TPGR
Sbjct: 82  PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQIRDLTRGVEVCIATPGR 141

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           ++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +   RQT ++SAT   +++
Sbjct: 142 LIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCMWSATWPKDVR 201

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG--II 250
           +++++FL +  ++ + +   +A       V   +++ K+  + + L +  +  K+   +I
Sbjct: 202 QLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAKHLDRIMEDNKHSKVLI 261

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F   K+   ++   L + G+   +IHG+  Q  R  +L+ FK G   +MVA+D+A+RG+D
Sbjct: 262 FTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVASRGID 321

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI-DAIEKLIEKK 367
           + D+ HV N+D PN +E+Y+HRIGRTGRAG  G A TL   ++ K   D +  L E K
Sbjct: 322 VRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQARDLVAILSESK 379


>gi|105969677|gb|ABF81676.1| eIF4A [Plasmodium falciparum]
          Length = 696

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 136/379 (35%), Positives = 201/379 (53%), Gaps = 46/379 (12%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-----------TILEKGRA- 68
           Y K TPIQ  ++ +++ R+D+ G+AQTG+GKTA ++LP++           T  E+    
Sbjct: 137 YDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHMLINDPPKHTYYEQNNKT 196

Query: 69  ------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                 RV +P  LIL PTRELA Q+  + +K+     +   +L GG   + Q   L++G
Sbjct: 197 SNYYFNRVCLPICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIKTQLSNLDKG 256

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF------ 176
           AD+++ TPGR+ D   +GK+ +     LV+DEADRMLDMGF P I++I +          
Sbjct: 257 ADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVNDYDMPGNDND 316

Query: 177 ------------------TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
                              RQT++FSAT   E+Q +++ +L     + V    ST E I+
Sbjct: 317 VHTSENKVEYKKYCNDIIKRQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKVGSTNEYIK 376

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
              V  + +   KC  L  LL   +     I+F   K+    +   L  Q  +   IHG+
Sbjct: 377 QNLV--FVEEENKCNYLLNLLAENNNGLT-ILFVETKRKADIIERFLSNQKLNAVCIHGD 433

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
             Q  R + L  FK G   ++VA+D+AARGLDI ++ HV NFD+P+  ++YIHRIGRTGR
Sbjct: 434 KSQDERERALKLFKRGIKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGR 493

Query: 339 AGRHGKAFTLVAKEDIKHI 357
           AG  G A + V  ED K+I
Sbjct: 494 AGNIGIATSFV-NEDNKNI 511


>gi|281204091|gb|EFA78287.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 837

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 200/361 (55%), Gaps = 26/361 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +S K + A+    + K T IQ   IP  L   DV G A+TG+GKT +F++PML +
Sbjct: 98  FKDLPISAKSIQALEWGKFNKMTDIQRAAIPHALCGRDVLGAAKTGSGKTLAFIVPMLEL 157

Query: 63  LEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L +           +IL PTRELA Q+ +     GK ++ +  L+IGG     + KK+  
Sbjct: 158 LWRNNWTENDGVGAIILAPTRELAIQIFEVLRIAGKTHSFSAGLIIGGKDVAGEKKKIG- 216

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++LI TPGR+L H +       +N+++L++DEADR+LDMGF   +  I S +P  RQT
Sbjct: 217 TMNILIATPGRLLQHMDETDGFQCSNLQMLILDEADRILDMGFSKSLNAIISNLPKARQT 276

Query: 181 LLFSATMTDELQKVSENFLQNPKRI------EVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           LLFSAT T  ++ ++   L++P+ I      +V+TP +  +TI  C  A      KK  L
Sbjct: 277 LLFSATQTKSIKDLARLSLKDPEYISVYDKDQVSTPKNLQQTI--CVTA----LDKKIDL 330

Query: 235 LQQLLQSQDTMKNGIIF---CNQKK---NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           L   +++  T K  I+F   C Q +    +  LC+     G  +  +HG + Q +R+++ 
Sbjct: 331 LYSFIKTHLTSKT-IVFLSTCKQVRFMYEMFKLCNP----GCRLFQLHGKMKQWTRLEVF 385

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            NF   +   + A+D+AARGLD P+V  V   D P   + YIHR+GRT R  + GK+FT+
Sbjct: 386 QNFSHFSEGTLFATDVAARGLDFPEVDWVVQMDCPEDIQTYIHRVGRTARYHQGGKSFTV 445

Query: 349 V 349
           +
Sbjct: 446 L 446


>gi|114799571|ref|YP_759282.1| DEAD-box ATP dependent DNA helicase [Hyphomonas neptunium ATCC
           15444]
 gi|114739745|gb|ABI77870.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Hyphomonas
           neptunium ATCC 15444]
          Length = 708

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 121/361 (33%), Positives = 194/361 (53%), Gaps = 7/361 (1%)

Query: 14  CAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR----AR 69
            A+ + GY   T +Q       L+  D+   A+TG+GKT +F L +   L  G      R
Sbjct: 13  AAIHERGYETLTEVQAAATAPELEGRDLLVSARTGSGKTVAFGLAIANELLGGEDTFLIR 72

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  LI+ PTRELA QVA        N N  +A  +GG+    + + LERGA +++ T
Sbjct: 73  AATPLGLIIAPTRELALQVARELRWLYANTNAEIATCVGGMDMRDERRALERGAHIVVGT 132

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGR++DH NRG    + I  +V+DEAD MLD+GF   ++ I    P  R+TL+FSAT+  
Sbjct: 133 PGRLVDHINRGSFDTSAIRAVVLDEADEMLDLGFREELELILEDTPKERRTLMFSATVPK 192

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
            +  ++  + +N  RI   T S T    +  + A       +   +  +++  DT ++ I
Sbjct: 193 GIAALATRYQKNGLRI--TTDSDTTAHADIAYEALVVAPGDEENAIVNIVRHSDT-ESAI 249

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           +FC+ + +V +L   L  +GFSV A+ G   Q+ R   LS+ + G  ++ +A+D+AARGL
Sbjct: 250 VFCSTRASVNHLVARLGNRGFSVVALSGEFSQKERANALSSLRSGRARVCIATDVAARGL 309

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           D+P +  V + D+P      +HR GRTGRAGR G +  +VA +  + ++ + +  + +  
Sbjct: 310 DLPKLDLVIHADLPRDPATLLHRSGRTGRAGRKGISTLIVAPKARRRVERLLQDAKVEAR 369

Query: 370 W 370
           W
Sbjct: 370 W 370


>gi|260831524|ref|XP_002610709.1| hypothetical protein BRAFLDRAFT_202435 [Branchiostoma floridae]
 gi|229296076|gb|EEN66719.1| hypothetical protein BRAFLDRAFT_202435 [Branchiostoma floridae]
          Length = 427

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 120/374 (32%), Positives = 199/374 (53%), Gaps = 7/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   DV   A+ GTGKT ++++P++ 
Sbjct: 37  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALLARDVLARAKNGTGKTGAYIIPVIE 96

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +E  +  ++    L+L PTRELA Q +      GK+  +   +  GG        +L  
Sbjct: 97  RVELDKNHIQ---ALVLVPTRELALQTSSIATALGKHLGIRCMVTTGGTSLRDDIMRLYD 153

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD   +G   M++ ++LV+DE D++L   F   + ++   +P  RQ L
Sbjct: 154 TVHIVIATPGRILDLMKKGVAKMDHCQMLVLDEGDKLLSQDFKGMLDSVIGHLPRERQIL 213

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++   +  L  P  I +     T + I   +   + Q  +K   L  L  S
Sbjct: 214 LFSATFPLSVKDFMKRHLNKPYEINL-MEELTLKGITQYY--AFVQERQKVHCLNTLF-S 269

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+S   IH  ++Q+ R ++  +F+ G  + +V 
Sbjct: 270 KLQINQSIIFCNSTQRVELLAKKITELGYSCYYIHAKMNQQHRNRVFHDFRNGACRNLVC 329

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  IE
Sbjct: 330 SDLFTRGIDIQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGVAINLITFDDRYNLHKIE 389

Query: 362 KLIEKKVDWLNGDL 375
           + ++ ++  + GD+
Sbjct: 390 RELDTEIKPIPGDI 403


>gi|327304765|ref|XP_003237074.1| ATP-dependent RNA helicase DBP4 [Trichophyton rubrum CBS 118892]
 gi|326460072|gb|EGD85525.1| ATP-dependent RNA helicase DBP4 [Trichophyton rubrum CBS 118892]
          Length = 815

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/392 (32%), Positives = 208/392 (53%), Gaps = 26/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DL LS      +  + + + T IQ + IP  LQ  D+ G A+TG+GKT +F++P+L  
Sbjct: 52  FTDLPLSEPTTLGLSASHFKELTDIQSRAIPHALQGRDILGAAKTGSGKTLAFLVPVLEN 111

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  K          LI+ PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L R
Sbjct: 112 LFRKQWTEYDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLIIGGKSLQEEQERLGR 171

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++      +NI++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 172 -MNILVCTPGRMLQHMDQTAAFDTDNIQMLVLDEADRIMDMGFQSTVDAIVEHLPKERQT 230

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYSKKCALLQQL 238
           +LFSAT T ++  ++   LQ+P+ I V+  +S+A   T++  +V T      K   L   
Sbjct: 231 MLFSATQTKKVSDLARLSLQDPEYISVHQAASSATPSTLQQHYVVT--PLPDKLDTLWSF 288

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ---GFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++S  ++K+ II        V   +   +Q   G  +  +HG   Q +R+ I   F    
Sbjct: 289 IRS--SLKSKIIVFFSSSKEVRFVYEAFRQMQPGIPLLHLHGRQKQGARLDITHKFSASK 346

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
              + A+D+ ARGLD P V  V   D P  ++ YIHR+GRT R  R G+A   +  +  +
Sbjct: 347 NSCLFATDVVARGLDFPAVDWVIQLDCPEDSDTYIHRVGRTARYERDGRAVLFL--DPSE 404

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
            +  + +L +KK+            P+EKI+I
Sbjct: 405 EVGMLSRLEQKKI------------PIEKINI 424


>gi|295425856|ref|ZP_06818536.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064459|gb|EFG55387.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           amylolyticus DSM 11664]
          Length = 456

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 127/365 (34%), Positives = 200/365 (54%), Gaps = 11/365 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  + P++   +    + KPT +Q + IP +L R +V   + TG+GKT ++++P+   
Sbjct: 8   FTDSRIKPELQAGLEKIHFTKPTKVQERVIPTMLSRQNVIVQSATGSGKTHAYLVPVFND 67

Query: 63  LEKGRARVRMPRTLILEPTRELA---AQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           ++     V+    +I  P+RELA    QVA +  K     N+++  L GG   E Q +K+
Sbjct: 68  IDLSSDYVQ---AIITAPSRELADQLYQVAKSLRK-ASGLNISIMHLAGGTDRERQLEKI 123

Query: 120 E-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           E +   ++I TPGR+LD   +    ++ ++  +IDEAD  LDMGF+  I  + + +P   
Sbjct: 124 ENKKPQLVIATPGRLLDFVQKKIFAVDAVKDFIIDEADMTLDMGFLNDIDQVAAKLPKDV 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
               FSAT+  +L      ++ +P  I ++ P+  A TI++  +   ++  KK  L Q L
Sbjct: 184 LFAAFSATIPVKLANFLRKYMAHPDEIIIDNPAIIAPTIKNDLLDVGSK-DKKNVLYQLL 242

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q  +   ++F N K+ V  L   L+ QG  V  IHG I +R R + L   ++G  Q 
Sbjct: 243 TMGQPYL--ALVFANTKQKVDELTKFLQDQGLKVAKIHGGITERERKRTLRQVEQGQFQY 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARGLDI  V  V N++VP   E  IHRIGRTGR G  G A TL+ +E++  I+
Sbjct: 301 VVASDLAARGLDIDGVSLVINYEVPRNLEFVIHRIGRTGRNGLPGHAVTLIREEEMNRIE 360

Query: 359 AIEKL 363
            +EK+
Sbjct: 361 ELEKM 365


>gi|226289015|gb|EEH44527.1| ATP-dependent RNA helicase DBP8 [Paracoccidioides brasiliensis
           Pb18]
          Length = 546

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 135/384 (35%), Positives = 202/384 (52%), Gaps = 18/384 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL+P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F  P   
Sbjct: 117 SFATLGLAPWLVGSLSTMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAFAAP--- 173

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL+K          ++L PTRELA Q+ +  +      +L   L+ GG     Q   L +
Sbjct: 174 ILQKWSEDPFGIFAVVLTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIALSQ 233

Query: 122 GADVLICTPGRILDHFN---RGKLL-MNNIEILVIDEADRMLDMGFIPYIQNI----TSL 173
              V+I TPGR+ DH N   R  +  +N    +V+DEADR+L+ G    + ++    ++L
Sbjct: 234 RPHVVIATPGRLADHINSSGRDTICGLNRARFVVLDEADRLLESGPGSMLADLETCLSAL 293

Query: 174 VPFT-RQTLLFSATMTDELQ--KVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQY 228
            P T RQTLLF+AT+T E++  K        P        +    TI      +Y     
Sbjct: 294 PPSTARQTLLFTATVTPEVRALKSMPRPASKPPIFVTEISTENQATIPRTLKQSYLLVPL 353

Query: 229 SKKCALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
           + + A L  LL +  ++ K  IIFCN  K    L   L + G    ++H  + Q  R   
Sbjct: 354 THREAFLHVLLSTDGNSSKAAIIFCNHTKTADLLERMLRRLGHRATSLHSLLPQSERTAN 413

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           LS F+    +++VA+D+AARGLDIP V  V NF VP   ++Y+HR+GRT RAGR G+A T
Sbjct: 414 LSRFRASAARILVATDVAARGLDIPSVSLVINFGVPRNPDDYVHRVGRTARAGREGEAVT 473

Query: 348 LVAKEDIKHIDAIEKLIEKKV-DW 370
           LV + D++ + AIE  + +K+ +W
Sbjct: 474 LVGQRDVQLVLAIEDRVGRKMEEW 497


>gi|301605166|ref|XP_002932198.1| PREDICTED: probable ATP-dependent RNA helicase DDX59-like [Xenopus
           (Silurana) tropicalis]
          Length = 785

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 127/359 (35%), Positives = 199/359 (55%), Gaps = 14/359 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M+F      P +   +  AGY  PTPIQ++ IP+ L   D+   A TG+GKTA+F+LP +
Sbjct: 370 MEFDHCQFPPVLSSNIKAAGYEVPTPIQMQMIPVGLMGRDILASADTGSGKTAAFLLPAI 429

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
           +  LEK  +    P  LIL PTRELA Q+    ++  +   ++  ALL+GG+P   Q  +
Sbjct: 430 IRCLEKKDS----PAALILTPTRELAVQIEGQAKELMRGIPHMRTALLVGGMPLPPQIHR 485

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G  V+I TPGR+L+   +  + + +++IL++DEAD ML MGF   + +I  +VP   
Sbjct: 486 LKQGVQVIIATPGRLLEIIKQDSVNLGDLKILIVDEADTMLKMGFQQQVLDILEVVPHDH 545

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKKCALL 235
           QT+L SAT+   ++  ++  LQ+P RI V   N P +    I    V    + SKK  L 
Sbjct: 546 QTILVSATIPAGIEAFTKQLLQDPVRITVGEKNQPCTNVRQI----VLWVEEPSKKKKLF 601

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK-QGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + L  S+      ++F + +     L  ++ K  G    A+H +  Q  RMKIL    +G
Sbjct: 602 EILNDSKLFQPPVLVFVDCRLGADLLSDAVSKITGLECVAMHSDKSQVERMKILQGLLQG 661

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
              ++V++ +  RGLD+ +V  V NFD+P+  + Y+H+IGR GR G  G A T + K +
Sbjct: 662 EYDVVVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQIGRAGRLGHRGTAITFINKNN 720


>gi|308501725|ref|XP_003113047.1| hypothetical protein CRE_25460 [Caenorhabditis remanei]
 gi|308265348|gb|EFP09301.1| hypothetical protein CRE_25460 [Caenorhabditis remanei]
          Length = 852

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 131/382 (34%), Positives = 208/382 (54%), Gaps = 21/382 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA       ++ A+  + Y +PTPIQ   IP  +   DV GIA+TG+GKTA+++ P +  
Sbjct: 268 FAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSAISGRDVLGIAKTGSGKTAAYLWPAIVH 327

Query: 62  ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
           I+++   +    P  +I+ PTRELA QV    +++ K YN+ V    GG   +E  N+  
Sbjct: 328 IMDQPDLKSGEGPVAVIVVPTRELAIQVFQEAKRFCKVYNINVICAYGGGSKWEQSNELQ 387

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF------IPY------- 166
             GA++++CTPGRI+D    G         LV DEADRM DMGF       PY       
Sbjct: 388 NEGAEMVVCTPGRIIDLVKMGSTNFLRTTFLVFDEADRMFDMGFGMLFIQDPYLKYKKSS 447

Query: 167 ---IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
              +++I+  V   RQ L+FSAT   ++++++ + L +P RI           IE     
Sbjct: 448 EAQVKSISDHVRPDRQCLMFSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVFV 507

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
             +Q  K   L++ L++     K  +IF  +K +  ++   L+ + F V  +HG++ Q  
Sbjct: 508 MQSQEVKFHWLIRNLVEFASIGKV-LIFVTKKLDAEDVAKKLKLKDFEVILLHGDMLQAE 566

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L  F++ +  ++VA+D+AARGLDI ++  V NFD+    + ++HRIGRTGRAG  G
Sbjct: 567 RNDNLLKFRKKS-PILVATDVAARGLDIAEIRTVINFDMARDIDTHVHRIGRTGRAGHKG 625

Query: 344 KAFTLVAKEDIKHIDAIEKLIE 365
            A+TLV ++DI+ +  + K +E
Sbjct: 626 TAYTLVTEKDIEMVGHLVKNLE 647


>gi|114562149|ref|YP_749662.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333442|gb|ABI70824.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 410

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/347 (36%), Positives = 197/347 (56%), Gaps = 17/347 (4%)

Query: 23  KPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTR 82
           KP+ IQ   IP +L   DV  +AQTG+GKT ++ LP+L  + +          +I+ PTR
Sbjct: 22  KPSRIQQLAIPTILLGQDVLALAQTGSGKTYAYGLPVLQRISQ--LSTSHLSAVIIVPTR 79

Query: 83  ELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142
           ELA+QV+ N     ++ NL V +L GG   E Q ++L +  ++++ TPGR+L    +G +
Sbjct: 80  ELASQVSQNLAPLARSLNLRVEVLCGGEAIELQIERLAQPVNIVVATPGRLLALAQQGVI 139

Query: 143 LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNP 202
              +++ LV+DEADR+LDMGFI  I  + +L+P + Q LLFSAT+ + L  +++  +Q+ 
Sbjct: 140 QFEHLQSLVLDEADRLLDMGFIADINALIALMP-SGQRLLFSATLPESLVALAQK-VQSA 197

Query: 203 K--RIEVNTPSSTA----ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
              RIE +  +ST     +TI H    + A+       L Q  Q        ++F N K 
Sbjct: 198 SCVRIEAHALNSTVADIDQTIYHVNKGSKAKALTHLIALHQWSQV-------LVFVNAKD 250

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
           +   LC  L K G +  A+HG+ +Q  R K L  FK   + ++VA+D+ ARG+ +  +  
Sbjct: 251 DADALCKKLIKAGINAAALHGDKEQALRSKTLEQFKMAQLTVLVATDVLARGIHVDALPV 310

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           V N D+P +A  Y+HRIGRT RAG  G A +LV   ++  ++AI +L
Sbjct: 311 VINVDLPAQAAVYVHRIGRTARAGLSGVALSLVGHSELLSLEAIREL 357


>gi|194468331|ref|ZP_03074317.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
           100-23]
 gi|194453184|gb|EDX42082.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
           100-23]
          Length = 457

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/380 (33%), Positives = 206/380 (54%), Gaps = 16/380 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  L P ++ A+    + +PTP+Q + IP+++    V G + TG+GKT +F+LP+ + 
Sbjct: 6   FADFQLQPYLLTAIQKINFRQPTPVQQQVIPVIMAGRSVVGQSATGSGKTHAFLLPIFSK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +      V+    +I  P+RELA Q+   A    KY   + LT+   +GG   + Q  +L
Sbjct: 66  INPEDQTVQ---AVITTPSRELAYQIYNAAKQLNKYAP-HPLTIHNYVGGTDKQHQVDQL 121

Query: 120 ERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            R    ++I TPGR+LD      L ++  ++ V+DEAD  LDMGF+  +  I S  P   
Sbjct: 122 SRKQPQLVIGTPGRVLDLIKSQALDIHTAKMFVVDEADMTLDMGFLHEVDQIASHFPDDL 181

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT+  +L+   + +++NP   E+ T +     +++  ++T  Q   +  L+ +L
Sbjct: 182 QMMVFSATIPQKLRPFLKKYMENPVVEEIPTEAVINPDVDNWLMSTKGQ--DRNQLIYRL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   +     ++F N K+  V L   LE QG  V  IHG ++ R R + +   ++   Q 
Sbjct: 240 LTLGEPYL-ALVFANTKERAVELTQYLENQGLKVAMIHGGLEARRRKRTMRQIRDLEYQY 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHI 357
           +VA+DLAARG+DI  V  V N D+P   E ++HR+GRTGR G  G A TL    ED    
Sbjct: 299 VVATDLAARGIDIDGVSLVINDDLPTDLEYFVHRVGRTGRNGMKGTAITLYEPAED---- 354

Query: 358 DAIEKLIEKKVDWLNGDLSS 377
           D I KL E+ V ++  +L +
Sbjct: 355 DLIAKLEERGVKFVPKELKN 374


>gi|152964826|ref|YP_001360610.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
           SRS30216]
 gi|151359343|gb|ABS02346.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
           SRS30216]
          Length = 590

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 198/374 (52%), Gaps = 18/374 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL  ++V A+   G   P  IQ +T+P  +   D+ G A+TG+GKT  F LPML  
Sbjct: 148 FAELGLPEELVAALERRGMTAPFAIQSRTLPDGIAGRDILGRARTGSGKTLGFGLPMLAR 207

Query: 63  L-EKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L ++ R R+   PR L+L PTRELA QVAD     G + +L +++++GG+P+  Q   L+
Sbjct: 208 LAQQKRPRITGAPRGLVLVPTRELAMQVADALRPLGDSLDLRLSVVVGGVPYGRQIAALQ 267

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR++D  +R  + +  +++ V+DEAD M D+GF+P ++ I        Q 
Sbjct: 268 RGIDVLIATPGRLVDLIDRDAVSLAEVDVAVLDEADHMADLGFLPNVRAILEGTKPGGQR 327

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + FSAT+   ++ +  +FL +P              +EH   A       K ++L ++ +
Sbjct: 328 MFFSATLDRGVEALVTDFLTDPAFHAAPADPDDVGHMEHRVFAVRPH--DKLSILTEISK 385

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I F   K     L   L + G    AIHG++ Q  R K +  F  G  +++V
Sbjct: 386 RP---ARSIFFVRTKLGAQRLADQLNEAGAPAEAIHGDLRQSQRSKAIDAFSAGETRVLV 442

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ + DV  V + D PN  ++Y+HR GRT RAG  G    +   + +      
Sbjct: 443 ATDVAARGIHVDDVDLVVHVDPPNDHKDYLHRSGRTARAGATGTVLAIALPDQV------ 496

Query: 361 EKLIEKKVDWLNGD 374
                ++  WL+ D
Sbjct: 497 -----RRYGWLHRD 505


>gi|164656665|ref|XP_001729460.1| hypothetical protein MGL_3495 [Malassezia globosa CBS 7966]
 gi|159103351|gb|EDP42246.1| hypothetical protein MGL_3495 [Malassezia globosa CBS 7966]
          Length = 801

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/360 (34%), Positives = 197/360 (54%), Gaps = 14/360 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ + LS +    +  AG++  TPIQ  ++P  L+  DV G A+TG+GKT +F++P+L  
Sbjct: 50  FSVIPLSSRTRQGLKRAGFIDMTPIQKASLPASLRGRDVLGSARTGSGKTLAFLIPVLER 109

Query: 63  LEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + R +       L++ PTRELA Q+ D     G ++  +  L+IGG     +  +L R
Sbjct: 110 LYRQRWSHTDGLGALVVSPTRELAMQIFDVLRSIGGSHTFSAGLVIGGKDLTHEQDRL-R 168

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++LI TPGR+L H ++      +N+++LV+DEADR+LDMGF   +  I   +P +RQT
Sbjct: 169 KMNILIATPGRLLQHLDQTVGFDASNLQVLVLDEADRILDMGFANTLNAILEHLPSSRQT 228

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT T  ++ ++   L +P  I V  P +T  T      ++  ++ ++  +L  L +
Sbjct: 229 LLYSATQTRRVKDLARLSLSDPALITVQDPDATDPTSSSSSSSSTPRHLEQFYMLVDLPR 288

Query: 241 SQDTMKNGIIFCNQKKNVVNL--CHSLE---------KQGFSVCAIHGNIDQRSRMKILS 289
             D + + +    Q K +V +  C  ++         + G  + A+HG   Q  R+KI  
Sbjct: 289 KLDMLFSFLCSHTQCKVLVFMSSCRQVQFAHEVFCKLRPGLPLLALHGKQKQPRRLKIFD 348

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+      + A+D+AARGLD P V  V   DVP+ A+ YIHR+GRT R   HGKA   V
Sbjct: 349 EFRRSKHAALFATDIAARGLDFPAVDWVVQVDVPDSADTYIHRVGRTARYHAHGKALLFV 408


>gi|227894658|ref|ZP_04012463.1| ATP-dependent RNA helicase [Lactobacillus ultunensis DSM 16047]
 gi|227863553|gb|EEJ70974.1| ATP-dependent RNA helicase [Lactobacillus ultunensis DSM 16047]
          Length = 453

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 139/413 (33%), Positives = 217/413 (52%), Gaps = 14/413 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  + P +   +    + KPT +Q K IP +L    V   A TG+GKT ++++P+   
Sbjct: 5   FEDSRIKPAIQEGLKKIHFNKPTKVQEKVIPAMLSDLSVIVQAATGSGKTHAYLVPIFNE 64

Query: 63  LEKGRARVRMPRTLILEPTRELA---AQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +E+    V+   TL   P+RELA    QVA    +     + ++A L GG   E Q +K 
Sbjct: 65  IEEDAHYVQAIITL---PSRELADQLYQVAREL-RNASGMHFSIAHLAGGTDRERQLEKY 120

Query: 120 E-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           E R   ++I TPGR+LD   +    ++ I+  VIDEAD  LDMGF+  I  + + +P   
Sbjct: 121 ENRTPQLVIATPGRLLDFVQKKVFAVDQIKTFVIDEADMTLDMGFLSDIDQVAAKMPKEV 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q   FSAT+  +L      ++ +P  I ++ P+  A TI++  +   ++ ++K  L + L
Sbjct: 181 QIAAFSATIPVKLANFLRKYMAHPDEIVIDNPAVIAPTIKNDLLDIGSK-NRKSVLYKLL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q  +   ++F N K+ V  L   L+ QG  V  IHG + +R R + L   ++G  Q 
Sbjct: 240 TMGQPYL--ALVFANTKQTVDELTRYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQFQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARGLDI  V  V N+++P   E  IHRIGRTGR G  G A TL+ +E++  I+
Sbjct: 298 VVASDLAARGLDIDGVSLVINYEIPRDIEFVIHRIGRTGRNGLSGHAITLIREEEMNRIE 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            +EK+     D++      L P   K   ++ N   KN  +  K  G+ +++K
Sbjct: 358 DLEKM-GVHFDFVEVKNGELVP--RKHYRSRENRQGKNRKLDTKLVGYVKKEK 407


>gi|70826664|gb|AAZ13600.1| eukaryotic initiation factor 4A-like protein [Plasmodium
           falciparum]
          Length = 670

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 136/379 (35%), Positives = 201/379 (53%), Gaps = 46/379 (12%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-----------TILEKGRA- 68
           Y K TPIQ  ++ +++ R+D+ G+AQTG+GKTA ++LP++           T  E+    
Sbjct: 111 YDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHMLINDPPKHTYYEQNNKT 170

Query: 69  ------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                 RV +P  LIL PTRELA Q+  + +K+     +   +L GG   + Q   L++G
Sbjct: 171 SNYYFNRVCLPICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIKTQLSNLDKG 230

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF------ 176
           AD+++ TPGR+ D   +GK+ +     LV+DEADRMLDMGF P I++I +          
Sbjct: 231 ADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVNDYDMPGNDND 290

Query: 177 ------------------TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
                              RQT++FSAT   E+Q +++ +L     + V    ST E I+
Sbjct: 291 VHTSENKVEYKKYCNDIIKRQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKVGSTNEYIK 350

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
              V  + +   KC  L  LL   +     I+F   K+    +   L  Q  +   IHG+
Sbjct: 351 QNLV--FVEEENKCNYLLNLLAENNNGLT-ILFVETKRKADIIERFLSNQKLNAVCIHGD 407

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
             Q  R + L  FK G   ++VA+D+AARGLDI ++ HV NFD+P+  ++YIHRIGRTGR
Sbjct: 408 KSQDERERALKLFKRGIKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGR 467

Query: 339 AGRHGKAFTLVAKEDIKHI 357
           AG  G A + V  ED K+I
Sbjct: 468 AGNIGIATSFV-NEDNKNI 485


>gi|255721553|ref|XP_002545711.1| hypothetical protein CTRG_00492 [Candida tropicalis MYA-3404]
 gi|240136200|gb|EER35753.1| hypothetical protein CTRG_00492 [Candida tropicalis MYA-3404]
          Length = 770

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 118/355 (33%), Positives = 200/355 (56%), Gaps = 13/355 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL ++   +  + ++ +V  T IQ KTIP+ L+  D+ G A+TG+GKT +F++P +  
Sbjct: 50  FSDLPITENTLKGLKESTFVSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLVPTIES 109

Query: 63  LEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         LI+ PTRELA Q+ +   K G+N + +  L+ GG   + + +++ R
Sbjct: 110 LIRNKITEYDGLAALIISPTRELAVQIFEVLTKIGRNNSFSAGLVTGGKDVQYEKERVSR 169

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+ TPGRI  H N    +  +N+++LV+DEADR LDMGF   I NI   +P TRQT
Sbjct: 170 -MNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFRKQIDNILGHLPTTRQT 228

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTP---SSTAETIEHCFVATYAQYSKKCALLQQ 237
           LLFSAT ++ ++ ++   L NPK+I V++    S+T E+++  +V       +K  +L  
Sbjct: 229 LLFSATQSESVKDLARLSLTNPKKIGVSSDQEISATPESLDQYYVK--VPLDEKLDVLWS 286

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ---GFSVCAIHGNIDQRSRMKILSNFKEG 294
            ++S    K  + F + K+  V   +   +    G S+  ++G   Q +R++    F + 
Sbjct: 287 FIKSHLKSKILVFFSSSKQ--VQFAYETFRTLQPGISLMKLYGRHKQTARLETTKKFSQA 344

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
               + A+D+ ARGLD P +  V   D P  +  Y+HR+GR+ R GR GK+  ++
Sbjct: 345 QHACLFATDIVARGLDFPAIDWVVQVDCPEDSATYVHRVGRSARFGRQGKSLLML 399


>gi|223933109|ref|ZP_03625101.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
 gi|302024360|ref|ZP_07249571.1| helicase [Streptococcus suis 05HAS68]
 gi|330833357|ref|YP_004402182.1| DEAD/DEAH box helicase domain-containing protein [Streptococcus
           suis ST3]
 gi|223898170|gb|EEF64539.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
 gi|329307580|gb|AEB81996.1| DEAD/DEAH box helicase domain protein [Streptococcus suis ST3]
          Length = 447

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 195/371 (52%), Gaps = 19/371 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D+ L P +  A+ +  +V+PT +Q K IP+VL   D+ G ++TG+GKT +F++P  
Sbjct: 1   MKFTDMKLKPYIQEALKEINFVQPTEVQEKLIPVVLSGRDLIGESKTGSGKTHTFLIP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL--LIGGIPFEAQNKK 118
            I +K    +   + +I  P+RELA Q+     +   + ++ V +   +GG     Q  K
Sbjct: 59  -IFQKLSEELDQVQAVITAPSRELATQIYQAARQLASHSDIEVRVTNYVGGTDKNRQIDK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+     +++ TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LQASQPHIVVGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-----AQYSKKC 232
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TIE+  ++T      AQ  +  
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEQIKTHTVISDTIENWLISTKGRDRNAQILEVT 237

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L+Q  L         +IF N K     L   L   G  V  IHG+I  R R ++++  K
Sbjct: 238 KLMQPYL--------AMIFVNTKTRADELHSYLTANGLRVAKIHGDIPPRERKRMMNQVK 289

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
               Q +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    
Sbjct: 290 NLDYQYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGIAITLYQPS 349

Query: 353 DIKHIDAIEKL 363
           D   I  +EKL
Sbjct: 350 DDADIRELEKL 360


>gi|198462641|ref|XP_001352498.2| GA16838 [Drosophila pseudoobscura pseudoobscura]
 gi|198150914|gb|EAL29995.2| GA16838 [Drosophila pseudoobscura pseudoobscura]
          Length = 852

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 116/359 (32%), Positives = 198/359 (55%), Gaps = 10/359 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   GY  PTPIQ KTIPL+L+  DV  +A+TG+GKTA F++P+   
Sbjct: 41  FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++ R   +  R LIL PTRELA Q     ++ G+   L   L++GG   ++Q   +   
Sbjct: 101 LQR-RDPTKGARALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHTC 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR L       L +N+I+ +V DEADR+ +MGF   +      +P TRQ ++
Sbjct: 160 PDVIVATPGRFLHLCVEMDLKLNSIDYVVFDEADRLFEMGFGEQLNETLHRLPATRQMVM 219

Query: 183 FSATMTDELQKVSENFLQNPK--RIEVNT--PSSTAETIEHCFVATYAQYSKKCALLQQL 238
           FSAT+   L   +   L +P   R++V +  P + A    HC      +Y+    LL+ +
Sbjct: 220 FSATLPKLLVDFARAGLNDPVLIRLDVESKLPDALALKFLHC--RPDDRYTALVVLLKYV 277

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +      ++F   + +V  +   L + G S  +++ ++D  +R    + F    + +
Sbjct: 278 IPKES---QTVVFAGTQHHVELISFILGEAGISNTSVYSSLDPAARKINTAKFVNKKVSV 334

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ +D+AARG+DIP + +V N   P + + ++HR+GR  RAGR G A+++ + +D  H+
Sbjct: 335 LIVTDVAARGIDIPSLDYVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIFSTDDTAHL 393


>gi|28211493|ref|NP_782437.1| ATP-dependent RNA helicase [Clostridium tetani E88]
 gi|28203934|gb|AAO36374.1| ATP-dependent RNA helicase [Clostridium tetani E88]
          Length = 386

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 118/362 (32%), Positives = 201/362 (55%), Gaps = 8/362 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL+  ++  +   G  KPT IQIKTIPL L+  DV G + TG+GKT +++LP   I
Sbjct: 5   FDKLGLNQNLIEGLKQEGINKPTDIQIKTIPLALENKDVIGQSPTGSGKTLAYLLP---I 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL--LIGGIPFEAQNKKLE 120
            +K     R  + +IL PT ELA Q+    +    N  ++V    +IG    + Q +KL+
Sbjct: 62  FQKIDTSKREMQAIILAPTHELAMQINKEIQLLSGNSKVSVTSTPIIGNANVKRQIEKLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V++ + GRIL+   + K+  + I+ +V+DE D++LD   +  I+++       RQ 
Sbjct: 122 EKPHVIVGSSGRILELIKKKKISAHTIKTIVVDEGDKLLDHSNLSSIKDVIKTTMRDRQL 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT+ ++   V++  +++ + I+  + ++    I H +    +    K  +L++L+ 
Sbjct: 182 MVFSATINEKTLNVAKGLMKDAEFIKAKSENAINPNITHMYF--ISDQRDKIEVLRKLVA 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S +  K  I+F N+      +   L+        IHG+  ++ R K L  F+ G +QL+V
Sbjct: 240 SINPEK-AIVFINKSDETEIITAKLKYHKIKAEGIHGSSSKKDRQKALEGFRSGKLQLLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDI +V H+FN D+P+  + Y+HR+GRT R G  G A ++V  +++  I   
Sbjct: 299 ASDIAARGLDIKNVSHIFNLDLPSDPKEYLHRVGRTSRTGETGTAISIVTDKELSLIKKY 358

Query: 361 EK 362
           E+
Sbjct: 359 ER 360


>gi|254460192|ref|ZP_05073608.1| ATP-dependent RNA helicase [Rhodobacterales bacterium HTCC2083]
 gi|206676781|gb|EDZ41268.1| ATP-dependent RNA helicase [Rhodobacteraceae bacterium HTCC2083]
          Length = 721

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/371 (33%), Positives = 200/371 (53%), Gaps = 15/371 (4%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEK-GR 67
           P +  A+   GY   TP+Q++         D+   AQTG+GKT +F L +  TILE+ GR
Sbjct: 20  PTLNEALKAKGYETLTPVQVEVSQPEFLDQDLLVSAQTGSGKTVAFGLAIAPTILEENGR 79

Query: 68  -ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
             R   P  L++ PTRELA QV   F+       + VA  +GG+    + + LERGA ++
Sbjct: 80  FERAATPLALVIAPTRELALQVKREFDWLFAPTGVVVASTVGGMDSRTERRALERGAHIV 139

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+ DH  RG + ++ +  +V+DEAD MLDMGF   ++ I    P  R+TL+FSAT
Sbjct: 140 VATPGRLRDHIMRGAIDLSALRAVVLDEADEMLDMGFSEDLEYILDATPSERRTLMFSAT 199

Query: 187 MTDELQKVSENF-LQNPKRIEVNTPSSTAETIEHCFVA----TYAQYSKKCALLQQLLQS 241
           +   + K+++ +  ++ KR+E     +  E  +H  +     T A    + A++  L   
Sbjct: 200 VPRGIAKLAQKYQRKDTKRVE-----TIGEGPQHADITYRAMTVAPSDTENAIINTLRYY 254

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +N I+F N +  V  L      +GFSV ++ G + Q  R   L   ++G  ++ VA
Sbjct: 255 E--AQNAIVFANTRAMVARLTARFSNRGFSVVSLSGELSQNERTHALQAMRDGRARVCVA 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+P++  V + D+P+  E  +HR GRTGRAGR G +  +V        + + 
Sbjct: 313 TDVAARGIDLPNLELVIHADLPSNGETLLHRSGRTGRAGRKGISALIVPGRQKSKAERLL 372

Query: 362 KLIEKKVDWLN 372
           +  +   +W N
Sbjct: 373 RFAKLTAEWSN 383


>gi|73953311|ref|XP_851746.1| PREDICTED: similar to Nucleolar RNA helicase II (Nucleolar RNA
           helicase Gu) (RH II/Gu) (DEAD-box protein 21) [Canis
           familiaris]
          Length = 784

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 127/354 (35%), Positives = 199/354 (56%), Gaps = 19/354 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ KT   V    D+   A+TGTGKT SF +P++  
Sbjct: 189 FSNFPISEETIKLLKARGVTFLFPIQAKTFYHVYSGKDLIAQARTGTGKTFSFAIPLIVK 248

Query: 63  LE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+   + R R R P+ L+L PTRELA QV+ +F    +   L VA   GG P+  Q +++
Sbjct: 249 LQGELQDRKRGRAPQVLVLAPTRELANQVSRDFSDITRK--LAVACFYGGTPYGGQIERM 306

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   GKL +  ++ +V+DE D+MLDMGF   ++ I S V + + 
Sbjct: 307 RNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILS-VAYKKD 365

Query: 179 -----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSK 230
                QTLLFSAT    +  V++ ++++  +++++       TA T+EH  +A    +++
Sbjct: 366 SEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEH--LAIKCHWTQ 423

Query: 231 KCALLQQLLQSQDTMKN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A++  +++         IIFC  KK    L  ++  +     ++HG+I Q+ R   L 
Sbjct: 424 RAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNVSIRQ-DAQSLHGDIPQKQREITLK 482

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
            F+ G   ++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 483 GFRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTG 536


>gi|124512574|ref|XP_001349420.1| RNA helicase, putative [Plasmodium falciparum 3D7]
 gi|23499189|emb|CAD51269.1| RNA helicase, putative [Plasmodium falciparum 3D7]
 gi|156072132|gb|ABU45417.1| DEAD-box helicase 11 [Plasmodium falciparum]
          Length = 941

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 136/379 (35%), Positives = 201/379 (53%), Gaps = 46/379 (12%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-----------TILEKGRA- 68
           Y K TPIQ  ++ +++ R+D+ G+AQTG+GKTA ++LP++           T  E+    
Sbjct: 382 YDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHMLINDPPKHTYYEQNNKT 441

Query: 69  ------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                 RV +P  LIL PTRELA Q+  + +K+     +   +L GG   + Q   L++G
Sbjct: 442 SNYYFNRVCLPICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIKTQLSNLDKG 501

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF------ 176
           AD+++ TPGR+ D   +GK+ +     LV+DEADRMLDMGF P I++I +          
Sbjct: 502 ADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVNDYDMPGNDND 561

Query: 177 ------------------TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
                              RQT++FSAT   E+Q +++ +L     + V    ST E I+
Sbjct: 562 VHTSENKVEYKKYCNDIIKRQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKVGSTNEYIK 621

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
              V  + +   KC  L  LL   +     I+F   K+    +   L  Q  +   IHG+
Sbjct: 622 QNLV--FVEEENKCNYLLNLLAENNNGLT-ILFVETKRKADIIERFLSNQKLNAVCIHGD 678

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
             Q  R + L  FK G   ++VA+D+AARGLDI ++ HV NFD+P+  ++YIHRIGRTGR
Sbjct: 679 KSQDERERALKLFKRGIKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGR 738

Query: 339 AGRHGKAFTLVAKEDIKHI 357
           AG  G A + V  ED K+I
Sbjct: 739 AGNIGIATSFV-NEDNKNI 756


>gi|330980316|gb|EGH78447.1| helicase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 287

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 107/286 (37%), Positives = 174/286 (60%), Gaps = 7/286 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA   L P ++ AV+  GY +P+ IQ ++IP+++  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAAFELHPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAFALPILHR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           ++  +   R P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPSK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P T+QT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETKQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++PK +++ T + T   IE   +  +A   +K + +  LL+ 
Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
           +D     I+F   ++  ++L  +LE +G+   A++G+I Q  R ++
Sbjct: 243 ED-FDALIMFVRTQQATLDLASALEAKGYKAAALNGDIAQNQRERV 287


>gi|227544205|ref|ZP_03974254.1| ATP-dependent RNA helicase [Lactobacillus reuteri CF48-3A]
 gi|300908200|ref|ZP_07125666.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           reuteri SD2112]
 gi|227185841|gb|EEI65912.1| ATP-dependent RNA helicase [Lactobacillus reuteri CF48-3A]
 gi|300894627|gb|EFK87983.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           reuteri SD2112]
          Length = 467

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/380 (33%), Positives = 206/380 (54%), Gaps = 16/380 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  L P ++ A+    + +PTP+Q + IP+++    V G + TG+GKT +F+LP+ + 
Sbjct: 16  FADFQLQPYLLTAIQKINFRQPTPVQQQVIPVIMAGRSVVGQSATGSGKTHAFLLPIFSK 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +      V+    +I  P+RELA Q+   A    KY   + LT+   +GG   + Q  +L
Sbjct: 76  INPEDQTVQ---AVITTPSRELAYQIYNAAKQLNKYAP-HPLTIHNYVGGTDKQHQVDQL 131

Query: 120 ERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            R    ++I TPGR+LD      L ++  ++ V+DEAD  LDMGF+  +  I S  P   
Sbjct: 132 SRKQPQLVIGTPGRVLDLIKSQALDIHTAKMFVVDEADMTLDMGFLHEVDQIASHFPDDL 191

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT+  +L+   + +++NP   E+ T +     +++  ++T  Q   +  L+ +L
Sbjct: 192 QMMVFSATIPQKLRPFLKKYMENPVIEEIPTEAVINPDVDNWLMSTKGQ--DRNQLIYRL 249

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   +     ++F N K+  V L   LE QG  V  IHG ++ R R + +   ++   Q 
Sbjct: 250 LTLGEPYL-ALVFANTKERAVELTQYLENQGLKVAMIHGGLEARRRKRTMRQIRDLEYQY 308

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHI 357
           +VA+DLAARG+DI  V  V N D+P   E ++HR+GRTGR G  G A TL    ED    
Sbjct: 309 VVATDLAARGIDIDGVSLVINDDLPTDLEYFVHRVGRTGRNGMKGTAITLYEPAED---- 364

Query: 358 DAIEKLIEKKVDWLNGDLSS 377
           D I KL E+ V ++  +L +
Sbjct: 365 DLIAKLEERGVKFVPKELKN 384


>gi|315042486|ref|XP_003170619.1| ATP-dependent RNA helicase eIF4A [Arthroderma gypseum CBS 118893]
 gi|311344408|gb|EFR03611.1| ATP-dependent RNA helicase eIF4A [Arthroderma gypseum CBS 118893]
          Length = 396

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 213/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L+P+++  V   G+ +P+ IQ + I  V++  DV   AQ+GTGKTA+F    ++ 
Sbjct: 25  FDAMNLNPELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATF---SISA 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    ++  + LIL PTRELA Q+       G   ++     IGG       K L+ G
Sbjct: 82  LQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSVDCHACIGGTNVRDDMKALQDG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I   +P + Q +L
Sbjct: 142 PQVVVGTPGRVHDMIQRRVLKTDHIKMFVLDEADEMLSRGFTEQIYDIFQFLPQSTQVVL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 202 LSATMPPDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 260

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L+ + F+V A+HG+++Q  R  I+  F+ G+ ++++A+
Sbjct: 261 -TITQAVIFCNTRRKVDWLTDKLQARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIAT 319

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 320 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 379

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 380 FYSTQIEEMPMNVADL 395


>gi|82539303|ref|XP_724049.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23478563|gb|EAA15614.1| Unknown protein [Plasmodium yoelii yoelii]
          Length = 635

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 131/387 (33%), Positives = 202/387 (52%), Gaps = 34/387 (8%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL---- 63
           ++ K+V  +   G    T IQ K+   + + +D+ G ++TG+GKT +F LP++  L    
Sbjct: 115 INQKIVEFLETKGIKYMTKIQSKSFMPIYEGNDIIGRSETGSGKTIAFALPLVEKLYKNI 174

Query: 64  ---------------------EKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNY 99
                                E+G     M   P  L+LEPTREL+ QV   F++  + Y
Sbjct: 175 ESQKKIIKNKSNEINSIQHLSEEGNKNDNMDKDPYILVLEPTRELSKQVETTFKEISQFY 234

Query: 100 NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159
           N  +  + GG  +  Q  KL +G  +L  TPGRI+DH  +  L + NI+ +V+DEAD ML
Sbjct: 235 NFNIMSIYGGESYTYQENKLRKGIQILTGTPGRIIDHIEKKNLSLKNIKYVVLDEADEML 294

Query: 160 DMGFIPYIQNITSLVPFT-RQTLLFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETI 217
           ++GF   I+ I S +     Q LL+SAT    ++ +S  +L+NP  I+V NT + T++TI
Sbjct: 295 NLGFTHDIERILSYINIKDAQVLLYSATTPSWIKDISSKYLKNPIYIDVINTINKTSKTI 354

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK--KNVVNLCHSLEKQGFSVCAI 275
           +H  + T     +K  LL+ ++  +      IIF   K   +++    S     FSV  +
Sbjct: 355 QHIAIKTPYDIKEKAMLLEDIILVKSNGGQVIIFTRTKLEADILASEGSFNYLNFSV--L 412

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HGNI Q +R   +  F+ G  Q+++A+D+AARGLDI +V  +     P     YIHR GR
Sbjct: 413 HGNIAQSTREHTMQRFRNGMFQVLIATDIAARGLDISNVDLIIQCYPPTYPAIYIHRSGR 472

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           TGRA + G +  L + ED   +  IEK
Sbjct: 473 TGRANKKGISIVLFSNEDKNDVIKIEK 499


>gi|307104817|gb|EFN53069.1| eukaryotic initiation factor 4A (ATP-dependent RNA helicase eIF4A)
           [Chlorella variabilis]
          Length = 410

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 197/379 (51%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+ KP+ IQ K I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 39  FDQMNLHENLLRGIYAYGFEKPSAIQQKGIVPFGKGLDVIQQAQSGTGKTATFCAGILQN 98

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+      +    L+L PTRELA Q+       G   N+     +GG       + L+ G
Sbjct: 99  LDYTLVECQ---ALVLAPTRELAQQIEKVMRALGDYLNVKCHACVGGTSVREDTRILQSG 155

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 156 VHVVVGTPGRVYDMLRRRALRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 215

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSAT+  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 216 FSATLPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLA 275

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   + ++  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 276 ITQ-----SVIFANTRRKVDWLTDKMRERDHTVSATHGDMDQNTRDVIMREFRSGSSRVL 330

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+PN  ENY+HRIGR+GR GR G A   V  +D + +  
Sbjct: 331 ITTDLLARGIDVQQVSLVINYDLPNNPENYLHRIGRSGRFGRKGVAINFVTNDDERLLQD 390

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     ++ L  +++ L
Sbjct: 391 IQRFYNTVIEELPSNIADL 409


>gi|222084927|ref|YP_002543456.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
 gi|221722375|gb|ACM25531.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
          Length = 636

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 187/346 (54%), Gaps = 6/346 (1%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           G+ P +  A+   GY   TP+Q   +   L   D    AQTG+GKT +F L +   L  G
Sbjct: 6   GIVPAIAQALAKRGYETLTPVQKSMLDPDLAGKDALVSAQTGSGKTVAFGLALAPTLLDG 65

Query: 67  R---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
                R   P  L + PTRELA QV    E   +    T+   +GG+    + + LERGA
Sbjct: 66  AERFGRAGTPLALAIAPTRELALQVQRELEWLYELTGATIVSCVGGMDMRTEKRALERGA 125

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            +++ TPGR+ DH  R  L ++ ++ +V+DEAD MLD+GF   ++ I    P  R+TL+F
Sbjct: 126 HIVVGTPGRLCDHIRRNSLDISKLKAVVLDEADEMLDLGFREDLEFILETSPTERRTLMF 185

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT+   + K++EN+ ++  RI   T +     I++  + T     ++ A++  L   + 
Sbjct: 186 SATVPRSIAKLAENYQRDAVRIASATEAKQHVDIDYRAL-TVVPSDRENAIINVLRYYE- 243

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +N I+FC+ +  V +L      +GFSV A+ G + Q  R   L   ++G  ++ +A+D
Sbjct: 244 -AQNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQSERTHALQAMRDGRARVCIATD 302

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +AARG+D+P +  V + D+P   E  +HR GRTGRAGR G +  +V
Sbjct: 303 VAARGIDLPGLDLVIHADIPTNPETLLHRSGRTGRAGRKGVSALIV 348


>gi|289742393|gb|ADD19944.1| eukaryotic initiation factor 4a [Glossina morsitans morsitans]
          Length = 403

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 131/377 (34%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F    + 
Sbjct: 31  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATF---SIA 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    +R  + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 88  ILQQIDTSIRDCQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARNLEA 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L  + I + V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 148 GCHVVVGTPGRVYDMINRKVLRTSRIRLFVLDEADEMLSRGFKDQIQDVFKMLPNDVQVI 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F++NP  I V     T E I+  F     Q + K   L  L  +
Sbjct: 208 LLSATMPPDVLEVSRCFMRNPVSILVKKEELTLEGIKQ-FYINVKQENWKLGTLCDLYDT 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 267 L-SITQSVIFCNTRRKVDQLTEEMTTHNFTVSAMHGDMEQRDRELIMKQFRSGSSRVLIT 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  ED + +  IE
Sbjct: 326 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDEDRRILKDIE 385

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 386 QFYHTTIEEMPANIADL 402


>gi|281346961|gb|EFB22545.1| hypothetical protein PANDA_001614 [Ailuropoda melanoleuca]
          Length = 765

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/332 (37%), Positives = 191/332 (57%), Gaps = 21/332 (6%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE---KGRARVRMPRTLILEPTR 82
           PIQ KT   V    D+   A+TGTGKT SF +P++  L+   + R R R P+ L+L PTR
Sbjct: 184 PIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGEMQDRKRGRAPQVLVLAPTR 243

Query: 83  ELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142
           ELA QV+ +F    +   L VA   GG P+  Q +++  G D+L+ TPGRI DH   GKL
Sbjct: 244 ELANQVSRDFSDITRK--LAVACFYGGTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKL 301

Query: 143 LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR------QTLLFSATMTDELQKVSE 196
            +  ++ +V+DE D+MLDMGF   ++ I S V + +      QTLLFSAT    +  V++
Sbjct: 302 DLTKLKHVVLDEVDQMLDMGFADQVEEILS-VAYKKDSEDNPQTLLFSATCPHWVYNVAK 360

Query: 197 NFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN-GIIFC 252
            ++++  +++++       TA T+EH  +A    ++++ A++  +++         IIFC
Sbjct: 361 KYMKSTYEQVDLIGKKTQKTAITVEH--LAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFC 418

Query: 253 NQKKNVVNLCHSLE-KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
             KK    L  ++  KQ     ++HG+I Q+ R   L  F+ G   ++VA+++AARGLDI
Sbjct: 419 ETKKEAQELSQNVSIKQ--DAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDI 476

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           P+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 477 PEVDLVVQSSPPKDVESYIHRSGRTGRAGRTG 508


>gi|297814273|ref|XP_002875020.1| hypothetical protein ARALYDRAFT_490504 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297320857|gb|EFH51279.1| hypothetical protein ARALYDRAFT_490504 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 507

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 121/361 (33%), Positives = 197/361 (54%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P   
Sbjct: 134 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIP--- 190

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEK      + + +I+ PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 191 VLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQ 250

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P ++++ S +P  RQ L
Sbjct: 251 PVHLLVGTPGRILDLAKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPENRQIL 310

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++   + FL NP  I +     T + I   +   + +  +K   L  L  S
Sbjct: 311 MFSATFPVTVKDFKDRFLTNPYVINL-MDELTLKGITQFY--AFVEERQKIHCLNTLF-S 366

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 367 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 426

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 427 TDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 486

Query: 362 K 362
           +
Sbjct: 487 Q 487


>gi|12381896|dbj|BAB21258.1| eukaryotic initiation factor 4A [Oryza sativa]
 gi|12381898|dbj|BAB21259.1| eukaryotic initiation factor 4A [Oryza sativa]
          Length = 414

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 198/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 43  FDDMGLQENLLRGIYAYGFEKPSAIQKRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G    +   +L+L PTRELA Q+       G    + V   +GG     Q + L  G
Sbjct: 103 LDYGLVECQ---SLVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREQQRILASG 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 160 VHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK---KCALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L   L 
Sbjct: 220 FSATMPPEGLEITLRFMDKPVRILVKRDELTREGIKQFYVNVEKEDWKLDTLCDLYDSLA 279

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N  + V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 280 ITQ-----SVIFVNTLRMVDWLTDKMRSRDHTVSATHGDMDQITRDIIMREFRSGSSRVL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL  RG+D+  V  V N+D+  + ENY+HRIGR+GR GR G A   V ++D + +  
Sbjct: 335 ITTDLLDRGIDVQQVSLVINYDLSTQTENYLHRIGRSGRFGRKGVAIIFVTRDDERMLFD 394

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     ++ L  +++ L
Sbjct: 395 IQRFYNGTIEELPANVADL 413


>gi|260812834|ref|XP_002601125.1| hypothetical protein BRAFLDRAFT_214468 [Branchiostoma floridae]
 gi|229286416|gb|EEN57137.1| hypothetical protein BRAFLDRAFT_214468 [Branchiostoma floridae]
          Length = 370

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 113/316 (35%), Positives = 184/316 (58%), Gaps = 15/316 (4%)

Query: 45  AQTGTGKTASFVLPMLT-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKN 98
           AQTG+GKTA+F+LP+LT ++++G A      ++ P+ + + PTRELA Q+     K+   
Sbjct: 4   AQTGSGKTAAFLLPVLTGMMKEGLAGSSFSNIQEPQAICVAPTRELAIQIFSEARKFSYG 63

Query: 99  YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             L   +  GG+       +++RG  +L+ TPGR+LD  ++G + +  ++ L++DEADRM
Sbjct: 64  TMLRPCIAYGGVSVMHHKSQIQRGCHLLVATPGRLLDFIDKGVISIKKLKYLILDEADRM 123

Query: 159 LDMGFIPYIQNITSLVPF------TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS 212
           LDMGF P I+ +     +       RQTL+FSAT  +E+QK++++FL++   + +     
Sbjct: 124 LDMGFEPEIRRLVETASWGMPAKGERQTLMFSATFPEEIQKLAQDFLEDYIFLTIGRVGG 183

Query: 213 TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
               +E   + + +QY K+  L   L       +  ++F   K+N   L   L + GF  
Sbjct: 184 ANTDVEQTVMES-SQYDKREKLTDIL--GNLGQERVLVFVETKRNADFLASYLSQSGFPT 240

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
            +IHG+  Q+ R + L +F+ G   ++VA+ +AARGLDIP V  V N+D+P+  + Y+HR
Sbjct: 241 TSIHGDRLQKEREEALMDFRTGRAPVLVATSVAARGLDIPKVMVVVNYDLPSSIDEYVHR 300

Query: 333 IGRTGRAGRHGKAFTL 348
           IGRTGR G  GKA + 
Sbjct: 301 IGRTGRVGNTGKAISF 316


>gi|227529699|ref|ZP_03959748.1| ATP-dependent RNA helicase [Lactobacillus vaginalis ATCC 49540]
 gi|227350365|gb|EEJ40656.1| ATP-dependent RNA helicase [Lactobacillus vaginalis ATCC 49540]
          Length = 469

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/354 (35%), Positives = 197/354 (55%), Gaps = 15/354 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  L P ++ A+ +  + +PTP+Q K IPL+L+   V G + TG+GKT +F+LP+   
Sbjct: 18  FADFNLQPYLLDAIKEINFHQPTPVQEKVIPLILKGDSVVGQSATGSGKTHAFLLPIFAQ 77

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL--LIGGIPFEAQNKKLE 120
           L+  +  V+    +I  P+RELA Q+    ++  K+    V +   +GG   + Q ++L+
Sbjct: 78  LDPAKQEVQ---AVITTPSRELAYQIYAAAKQLNKHLPTPVTIHNYVGGTDKQHQIEQLK 134

Query: 121 RG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           R    ++I TPGR+LD      L ++     V+DEAD  LDMGF+  +  I S  P   Q
Sbjct: 135 RQQPQLVIGTPGRVLDLIKSQALDIHTATKFVVDEADMTLDMGFLDQVDQIASHFPDDLQ 194

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++FSAT+  +L+   + +++NP   E+ T +     +++  ++T  +   K  L+ QLL
Sbjct: 195 MMVFSATIPQKLRPFLKKYMENPVMEEIPTETVINPDVKNWLMSTKGR--DKNQLIYQLL 252

Query: 240 QSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               TM      ++F N K+  + L   L +QG  V  IHG ++ R R + +   ++   
Sbjct: 253 ----TMGEPYLALVFANTKERAIELATYLGEQGLKVALIHGGLEARRRKRTMRQIRDLDF 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           Q +VA+DLAARG+DI  V  V N D+P+  E +IHR+GRTGR G  G A TL A
Sbjct: 309 QYVVATDLAARGIDIDGVSLVINDDIPSDLEYFIHRVGRTGRNGMPGTAITLYA 362


>gi|160380697|sp|Q0CMM5|DBP4_ASPTN RecName: Full=ATP-dependent RNA helicase dbp4
          Length = 804

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 142/457 (31%), Positives = 241/457 (52%), Gaps = 32/457 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DL LS   +  +  + Y   T IQ + +   L+  D+ G A+TG+GKT +F++P+L  
Sbjct: 48  FTDLPLSEPTLSGLSASHYKTLTDIQSRAVSHALKGRDILGAAKTGSGKTLAFLIPVLEN 107

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  K  A       LIL PTRELA Q+ +   K G+ ++ +  L+IGG   + + ++L +
Sbjct: 108 LYRKQWAEHDGLGALILSPTRELAIQIFEVLRKVGRYHHFSAGLVIGGKSLKEEQERLGK 167

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++  L    N+++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 168 -MNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRIMDMGFQKTVDAIIGHLPKERQT 226

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVN--TPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +LFSAT T ++  ++   LQ+P+ + V+    S+T  T++  +V T     +K  +L   
Sbjct: 227 MLFSATQTKKVSDLARLSLQDPEYVAVHEAAASATPSTLQQHYVVT--PLPQKLDILWSF 284

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++S    K  I+F +  K V  +  +    + G  +  +HG   Q  R+ I + + +   
Sbjct: 285 IRSNLKSKT-IVFLSSGKQVRFVYEAFRHLQPGIPLMHLHGRQKQGGRLDITTKYSQAKH 343

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++ ++D+AARGLD P V  V   D P  A+ YIHR+GRT R  R G+A   +   + + 
Sbjct: 344 AVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEQG 403

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  +++L +KKV            P+EKI++  +      N +  ++  F   +  Y  Q
Sbjct: 404 M--LKRLEQKKV------------PVEKINVKANKQQSIKNQL--QNMCFKDPELKYLGQ 447

Query: 417 KSHIP------LKESEKISKLQQDIQENDADSLGFRG 447
           K+ I       +++ ++I KL+    E  A SLG  G
Sbjct: 448 KAFISYVKSVYVQKDKEIFKLKDLDLEEFASSLGLPG 484


>gi|321472714|gb|EFX83683.1| hypothetical protein DAPPUDRAFT_230663 [Daphnia pulex]
          Length = 429

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 208/379 (54%), Gaps = 9/379 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L  K++  +   G+ +P+ IQ + I   +  HDV   AQ+GTGKTA+F + +L 
Sbjct: 57  NFDEMKLKEKLLRGIYAYGFERPSAIQQRAILPCIMGHDVIAQAQSGTGKTATFAISLLQ 116

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++      +    L+L PTRELA Q+       G   +      IGG       +KL +
Sbjct: 117 QIDIDANECQ---ALVLAPTRELAQQIQKVVLALGDYMDAQCHACIGGTNVREDLRKLSQ 173

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L  N I++ V+DEAD ML  GF   I ++   +P   Q +
Sbjct: 174 GVHVVVGTPGRVFDMINRRALKTNCIKVFVLDEADEMLSRGFKDQIYDVFKNLPAEVQVI 233

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+ +F++NP RI V     T E I+  +V    Q  ++   L  L   
Sbjct: 234 LLSATMPADVMEVTNHFMRNPIRILVKKEELTLEGIKQFYV----QVEREEWKLDTLCDL 289

Query: 242 QDTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            DT+     +IFCN ++ V  L   + ++ F+V A+HG ++Q+ R  I+  F+ G+ +++
Sbjct: 290 YDTLSITQAVIFCNTRRKVDWLTEKMHERDFTVSAMHGEMEQKERDVIMREFRSGSSRVL 349

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+PN  ENYIHRIGR GR GR G A   V +ED + +  
Sbjct: 350 ITTDLLARGIDVQQVSLVINYDLPNHRENYIHRIGRGGRFGRKGVAINFVTEEDWRVLRD 409

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+     ++ +  +++ L
Sbjct: 410 IEQYYNTTIEAMPMNVADL 428


>gi|237833961|ref|XP_002366278.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211963942|gb|EEA99137.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|221486500|gb|EEE24761.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
 gi|221508269|gb|EEE33856.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 734

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 139/404 (34%), Positives = 208/404 (51%), Gaps = 51/404 (12%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKG------------- 66
           Y KPTPIQ  +IP +L   D+   AQTG+GKTA+F+ P++  +L+ G             
Sbjct: 250 YTKPTPIQKNSIPTILSGRDLMACAQTGSGKTAAFLYPIIARMLQDGPPPLPQAAAGGGS 309

Query: 67  --RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
             R     P  L+L PTRELA Q+ +   K+     +    + GG   + Q   L+ G D
Sbjct: 310 GYRKPPAYPICLVLSPTRELAMQIYEEARKFQFGTGVRTVAVYGGSDVKRQLIDLDGGCD 369

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT-------SLVPFT 177
           + + TPGR++D   R K+ +  ++  V+DEADRMLDMGF+P I+ I        S  P T
Sbjct: 370 ICVATPGRLVDLLERRKVRLGLVQFFVLDEADRMLDMGFLPQIKLIVESFDLPPSPTPQT 429

Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
                            RQT++FSAT   E+Q ++++FL++   + V    ST E     
Sbjct: 430 AGYPSLGGDSGAGRRVGRQTVMFSATFPREIQMLAKDFLEDYIYLAVGRVGSTNE----- 484

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
           F+    QY+ +   L+ L++     + G  IIF   K+    +   L    F   +IHG+
Sbjct: 485 FIRQRLQYADEDQKLKLLVKLLRETEKGLTIIFVETKRKADMIEDYLVDDDFPAVSIHGD 544

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
             Q+ R + L  FK     ++VA+D+AARGLDI +V HV NFD+P   ++Y+HRIGRTGR
Sbjct: 545 RTQQEREEALRLFKAAKCPILVATDVAARGLDISNVTHVINFDLPTNIDDYVHRIGRTGR 604

Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPL 382
           AG  G A + V + +   +  +  L+E+       D+ S  PPL
Sbjct: 605 AGNLGLATSFVNESNKPILRDLLNLLEEAKQ----DIPSFLPPL 644


>gi|68470912|ref|XP_720463.1| hypothetical protein CaO19.2712 [Candida albicans SC5314]
 gi|68471370|ref|XP_720233.1| hypothetical protein CaO19.10227 [Candida albicans SC5314]
 gi|74627403|sp|Q5AF95|DBP4_CANAL RecName: Full=ATP-dependent RNA helicase DBP4
 gi|46442091|gb|EAL01383.1| hypothetical protein CaO19.10227 [Candida albicans SC5314]
 gi|46442332|gb|EAL01622.1| hypothetical protein CaO19.2712 [Candida albicans SC5314]
          Length = 765

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/355 (34%), Positives = 199/355 (56%), Gaps = 13/355 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL ++   +  + +A +V  T IQ KTIP+ L+  D+ G A+TG+GKT +F++P++  
Sbjct: 50  FSDLPITENTLKGLKEATFVSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPVIES 109

Query: 63  LEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         LI+ PTRELA Q+ +   K GK    +  L+ GG   + + +++ R
Sbjct: 110 LIRNKITEYDGLAALIVSPTRELAVQIFEVLTKIGKYNTFSAGLVTGGKDVQFEKERVSR 169

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+ TPGRI  H N    +  +N+++LV+DEADR LDMGF   I NI   +P TRQT
Sbjct: 170 -MNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPTTRQT 228

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTP---SSTAETIEHCFVATYAQYSKKCALLQQ 237
           LLFSAT ++ +  ++   L NP +I V++    S+T E++E  +V       +K  +L  
Sbjct: 229 LLFSATQSESVNDLARLSLTNPNKIGVSSDQEVSATPESLEQYYVK--VPLDEKLDVLWS 286

Query: 238 LLQSQDTMKNGI-IFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            ++S   +K+ I +F +  K V     +    + G S+  ++G   Q SR++    F + 
Sbjct: 287 FIKSH--LKSKILVFFSSSKQVQYTYETFRTLQPGISLMKLYGRHKQTSRLETTMKFSQA 344

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
               + A+D+ ARGLD P +  V   D P  A  Y+HR+GR+ R GR GK+  ++
Sbjct: 345 QHACLFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGRSARFGRKGKSLLML 399


>gi|329666845|gb|AEB92793.1| putative RNA helicase [Lactobacillus johnsonii DPC 6026]
          Length = 461

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/365 (33%), Positives = 202/365 (55%), Gaps = 11/365 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  + P++   +    + KPT +Q   IP +L + +V   A TG+GKT ++++P+L +
Sbjct: 8   FQNEKIRPELQAGLEKINFKKPTKVQSSVIPALLNKKNVVVQAATGSGKTHAYLIPILNM 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQ---VADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +++      + + ++  P+RELA Q   VA    +     N+++  L GG     Q +K 
Sbjct: 68  IDESAP---VTQAIVTAPSRELANQLYKVARQL-RDASGLNISIEYLGGGNDRNRQIEKA 123

Query: 120 E-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           E R   ++I TPGR+ D  ++  + + N++  +IDEAD  LDMGF+  +  I S +    
Sbjct: 124 ESRAPQLIIATPGRLHDFASKKFINLENVKAFIIDEADMTLDMGFLSQMDEIMSKLDKKA 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
               FSAT+  +L+     ++  P+ I ++ P+  A TI++  +   ++  KK  L + L
Sbjct: 184 VLGAFSATIPVKLENFLRKYMSKPEFIVIDNPAIIAPTIQNDLIDVGSR-DKKSILYKLL 242

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q  +   ++F N KK V  L   LE+QG  V  IHG I +R R +I+   +EG  Q 
Sbjct: 243 TMGQPYL--ALVFANTKKTVDELTDYLEEQGLKVTKIHGGITERERKRIIRQVREGQYQY 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARG+D+P V  V N+++P   E  IHRIGRTGR G  G A TL+  +++  I+
Sbjct: 301 VVASDLAARGIDVPGVSLVVNYEIPKDLEFVIHRIGRTGRNGLEGHAITLIYDDEMSQIE 360

Query: 359 AIEKL 363
            +EKL
Sbjct: 361 DLEKL 365


>gi|301755880|ref|XP_002913778.1| PREDICTED: nucleolar RNA helicase 2-like [Ailuropoda melanoleuca]
          Length = 794

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/332 (37%), Positives = 191/332 (57%), Gaps = 21/332 (6%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE---KGRARVRMPRTLILEPTR 82
           PIQ KT   V    D+   A+TGTGKT SF +P++  L+   + R R R P+ L+L PTR
Sbjct: 213 PIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGEMQDRKRGRAPQVLVLAPTR 272

Query: 83  ELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142
           ELA QV+ +F    +   L VA   GG P+  Q +++  G D+L+ TPGRI DH   GKL
Sbjct: 273 ELANQVSRDFSDITRK--LAVACFYGGTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKL 330

Query: 143 LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR------QTLLFSATMTDELQKVSE 196
            +  ++ +V+DE D+MLDMGF   ++ I S V + +      QTLLFSAT    +  V++
Sbjct: 331 DLTKLKHVVLDEVDQMLDMGFADQVEEILS-VAYKKDSEDNPQTLLFSATCPHWVYNVAK 389

Query: 197 NFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN-GIIFC 252
            ++++  +++++       TA T+EH  +A    ++++ A++  +++         IIFC
Sbjct: 390 KYMKSTYEQVDLIGKKTQKTAITVEH--LAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFC 447

Query: 253 NQKKNVVNLCHSLE-KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
             KK    L  ++  KQ     ++HG+I Q+ R   L  F+ G   ++VA+++AARGLDI
Sbjct: 448 ETKKEAQELSQNVSIKQ--DAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDI 505

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           P+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 506 PEVDLVVQSSPPKDVESYIHRSGRTGRAGRTG 537


>gi|195170534|ref|XP_002026067.1| GL16100 [Drosophila persimilis]
 gi|194110947|gb|EDW32990.1| GL16100 [Drosophila persimilis]
          Length = 854

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 116/359 (32%), Positives = 195/359 (54%), Gaps = 10/359 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   GY  PTPIQ KTIPL+L+  DV  +A+TG+GKTA F++P+   
Sbjct: 41  FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++ R   +  R LIL PTRELA Q     ++ G+   L   L++GG   ++Q   +   
Sbjct: 101 LQR-RDPTKGARALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHTC 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR L       L +N+I+ +V DEADR+ +MGF   +      +P TRQ ++
Sbjct: 160 PDVIVATPGRFLHLCVEMDLKLNSIDYVVFDEADRLFEMGFGEQLNETLHRLPATRQMVM 219

Query: 183 FSATMTDELQKVSENFLQNPKRI----EVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           FSAT+   L   +   L +P  I    E   P + A    HC      +Y+    LL+ +
Sbjct: 220 FSATLPKLLVDFARAGLNDPVLIRLDVESKLPDALALKFLHC--RPDDRYTALVVLLKYV 277

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +      ++F   + +V  +   L + G S  +++ ++D  +R    + F    + +
Sbjct: 278 IPKES---QTVVFAGTQHHVELISFILGEAGISNTSVYSSLDPAARKINTAKFVNKKVSV 334

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ +D+AARG+DIP + +V N   P + + ++HR+GR  RAGR G A+++ + +D  H+
Sbjct: 335 LIVTDVAARGIDIPSLDYVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIFSTDDTAHL 393


>gi|315640866|ref|ZP_07895965.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           italicus DSM 15952]
 gi|315483405|gb|EFU73902.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           italicus DSM 15952]
          Length = 449

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 123/369 (33%), Positives = 204/369 (55%), Gaps = 15/369 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F      P +  A+ D G+V PT +Q K IP++ +   + G +QTG+GKT +F+LP+ 
Sbjct: 1   MLFTSFAFQPYIQTALADKGFVHPTEVQEKLIPIISKGKSLIGQSQTGSGKTHTFLLPLF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKK 118
             ++  +  V++   +I  P+RELA+Q+    ++        + V   +GG   + Q  +
Sbjct: 61  DKVQPEKNEVQV---VICAPSRELASQIYQEAKQLASFSETEIRVMNFVGGTDKKRQVDR 117

Query: 119 L-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +  +   V+I TPGRILD  N   L ++     V+DEAD  LDMGF+P +  I +     
Sbjct: 118 IANQQPQVVIGTPGRILDMINEQALQIHTAFAFVVDEADMALDMGFLPEVDQIAAKFSED 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+ ++L+   + ++QNP   E+ + +  +++I++  ++T  + +    L+ Q
Sbjct: 178 IQFLVFSATIPEKLRPFLKKYMQNPVIEEIASKTVISDSIDNWLISTKGKNT--SHLVYQ 235

Query: 238 LLQSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           LL    T+ +    I+F N K+ V  + + L++Q   V  IHG+I  R R +++   +  
Sbjct: 236 LL----TVGHPYLAIVFANTKQRVNEIANYLKEQDLKVATIHGDISPRERKRVMKQVQNM 291

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             Q +VA+DLAARG+DI  V HV N ++P+  + +IHR+GRTGR    G A TL      
Sbjct: 292 EFQYVVATDLAARGIDIEGVSHVINAEIPDDLDFFIHRVGRTGRNQLSGIAITLYDPSQE 351

Query: 355 KHIDAIEKL 363
             I+AIE L
Sbjct: 352 PQIEAIEAL 360


>gi|3047077|gb|AAC13590.1| contains similarity to the conserved C-terminal domain of helicases
           (Pfam: helicase_C.hmm, score: 90.11), similar to
           DEAD-box h [Arabidopsis thaliana]
          Length = 477

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 120/348 (34%), Positives = 195/348 (56%), Gaps = 16/348 (4%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--EKGRARV-------RMPRTL 76
           PIQ   +   LQ  D+   A+TGTGKT +F +P++  L  E G           R+P+ L
Sbjct: 127 PIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRSLRSGRLPKFL 186

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           +L PTRELA QV    ++      L+   + GG+ +  Q   L RG DV++ TPGRI+D 
Sbjct: 187 VLAPTRELAKQVEKEIKESAPY--LSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDL 244

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
                L +  +E LV+DEAD+ML +GF   +++I   +P  RQ++LFSATM   ++K++ 
Sbjct: 245 IEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLAR 304

Query: 197 NFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
            +L NP  I++  +     AE I+   +AT +  + K  +L  L+         I+F   
Sbjct: 305 KYLDNPLNIDLVGDQDEKLAEGIKLYAIATTS--TSKRTILSDLITVYAKGGKTIVFTQT 362

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K++   +  +L     +  A+HG+I Q  R + L+ F++G   ++VA+D+A+RGLDIP+V
Sbjct: 363 KRDADEVSLAL-SNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNV 421

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
             V ++++PN  E ++HR GRTGRAG+ G A  +      + + ++E+
Sbjct: 422 DLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLER 469


>gi|121705144|ref|XP_001270835.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           clavatus NRRL 1]
 gi|134034143|sp|A1CJT5|IF4A_ASPCL RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|119398981|gb|EAW09409.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           clavatus NRRL 1]
          Length = 398

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 211/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P+++  +   G+ +P+ IQ + I  +++  DV   AQ+GTGKTA+F    ++ 
Sbjct: 27  FDSMDLKPELLRGIYAYGFERPSAIQQRAIMPIIKGSDVIAQAQSGTGKTATF---SISA 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    ++  + LIL PTRELA Q+       G   +L     IGG       K L+ G
Sbjct: 84  LQKIDPNLKACQALILAPTRELAQQIQKVVVAIGDFMSLECHACIGGTNVREDMKALQDG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + +++ ++DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 144 PQVVVGTPGRVQDMIQRRVLRTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 204 LSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A+
Sbjct: 263 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIAT 321

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 322 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 381

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 382 FYSTQIEEMPMNVADL 397


>gi|224000281|ref|XP_002289813.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220975021|gb|EED93350.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 466

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 191/366 (52%), Gaps = 26/366 (7%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI----------LEKGR-- 67
           G    TP+Q K +  VL   DV G ++TGTGKT +F +P LT           LE+GR  
Sbjct: 5   GITHFTPVQAKAMSPVLAGRDVIGRSRTGTGKTLAFGMPALTRMVERAKEKGNLEQGRDG 64

Query: 68  ----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
                + R+P  ++L PTRELA QV D      K   L  +   GG+ ++ Q + L +G 
Sbjct: 65  STRMRKGRLPSMIVLCPTRELARQVEDELSAVCKPLGLFSSCFHGGVSYDPQARALRQGV 124

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR----Q 179
           DV++ TPGR++DH +RG L ++  + +V+DEAD ML+MGF   ++ I   V        Q
Sbjct: 125 DVIVGTPGRVIDHIDRGNLDLSECDTVVLDEADEMLNMGFAEDVEVILEGVGSKNREKTQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVN---TPSSTAETIEHCFVATYAQYSKKCALLQ 236
            LLFSAT    ++++  ++ ++   I++    T S  A T+ H  +        K A+L+
Sbjct: 185 CLLFSATTPPWVKEIGSHYQRDVLSIDITGEQTGSRVASTVRHTAIQVPFGADAKKAILE 244

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++         I+F   KK    L      +  S  AIHG+I Q+ R   L+ F+ G  
Sbjct: 245 DIIA---LFGKTIVFTETKKEADELVSGSVFKTLSAQAIHGDIGQKQRDATLAAFRAGAF 301

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI DV  V  F+ P   + Y+HR GRTGRAG  G +  L  +   + 
Sbjct: 302 NVLVATDVAARGIDIKDVDLVIQFEPPRDVDTYVHRSGRTGRAGASGISVLLFQQNQARD 361

Query: 357 IDAIEK 362
           I  IEK
Sbjct: 362 IVRIEK 367


>gi|70992287|ref|XP_750992.1| DEAD box  RNA helicase (Hca4) [Aspergillus fumigatus Af293]
 gi|74670609|sp|Q4WM60|DBP4_ASPFU RecName: Full=ATP-dependent RNA helicase dbp4
 gi|66848625|gb|EAL88954.1| DEAD box  RNA helicase (Hca4), putative [Aspergillus fumigatus
           Af293]
 gi|159124561|gb|EDP49679.1| DEAD box RNA helicase (Hca4), putative [Aspergillus fumigatus
           A1163]
          Length = 787

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 131/391 (33%), Positives = 214/391 (54%), Gaps = 24/391 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F+DL LS      +  + Y   T IQ + I   L+  D+ G A+TG+GKT +F++P+L  
Sbjct: 49  FSDLPLSEPTASGLASSHYKTLTDIQSRAISHALKGRDILGAAKTGSGKTLAFLVPVLEN 108

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  K  A       LIL PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L R
Sbjct: 109 LYRKQWAEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLKEEQERLGR 168

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++  L    N+++LV+DEADR+LD+GF   +  I   +P  RQT
Sbjct: 169 -MNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIIGHLPKERQT 227

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT T ++  ++   LQ+P+ + V+  +S+A    ++  +V T     +K  +L   
Sbjct: 228 LLFSATQTKKVSDLARLSLQDPEYVAVHETASSATPSKLQQHYVIT--PLPQKLDILWSF 285

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++S    K  ++F +  K V  +  S    + G  +  +HG   Q  R+ I++ F +   
Sbjct: 286 IRSNLKSKT-MVFLSSGKQVRFVYESFRHLQPGIPLMHLHGRQKQGGRLDIVTRFSQSKH 344

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++ ++D+AARGLD P V  V   D P  A+ YIHR+GRT R  R G+A   +   + + 
Sbjct: 345 CVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYEREGRAVLFLDPSEEEG 404

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
           +  +++L +KKV            P+EKI+I
Sbjct: 405 M--LKRLEQKKV------------PIEKINI 421


>gi|224088798|ref|XP_002308545.1| predicted protein [Populus trichocarpa]
 gi|222854521|gb|EEE92068.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 196/379 (51%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDAMNLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+      +    L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 102 LDYDIVECQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSAG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLSD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     V+ L  +++ L
Sbjct: 394 IQRFYNVTVEELPSNVADL 412


>gi|241954424|ref|XP_002419933.1| ATP-dependent RNA helicase, putative; atp-dependent rna helicase
           dbp4 (ec 3.6.1.-) (dead box protein 4 (helicase ca4)
           (helicase uf1) [Candida dubliniensis CD36]
 gi|223643274|emb|CAX42148.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 765

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/355 (34%), Positives = 200/355 (56%), Gaps = 13/355 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL ++   +  + +A +V  T IQ KTIP+ L+  D+ G A+TG+GKT +F++P++  
Sbjct: 50  FSDLPITENTLKGLKEATFVSLTDIQKKTIPVALKGEDLMGTARTGSGKTLAFLIPVIES 109

Query: 63  LEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         LI+ PTRELA Q+ +   K GK  + +  L+ GG   + + +++ R
Sbjct: 110 LIRNKITEYDGLAALIVSPTRELAVQIFEVLTKIGKYNSFSAGLVTGGKDVQFEKERVSR 169

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+ TPGRI  H N    +  +N+++LV+DEADR LDMGF   I NI   +P TRQT
Sbjct: 170 -MNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPTTRQT 228

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTP---SSTAETIEHCFVATYAQYSKKCALLQQ 237
           LLFSAT ++ +  ++   L NP +I V++    S+T E++E  +V       +K  +L  
Sbjct: 229 LLFSATQSESVNDLARLSLTNPNKIGVSSDQEVSATPESLEQYYVK--VPLDEKLDVLWS 286

Query: 238 LLQSQDTMKNGI-IFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            ++S   +K+ I +F +  K V     +    + G S+  ++G   Q SR++    F + 
Sbjct: 287 FIKSH--LKSKILVFFSSSKQVQYTYETFRTLQPGISLMKLYGRHKQTSRLETTMKFSQA 344

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
               + A+D+ ARGLD P +  V   D P  A  Y+HR+GR+ R GR GK+  ++
Sbjct: 345 QHACLFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGRSARFGRKGKSLLML 399


>gi|238881563|gb|EEQ45201.1| hypothetical protein CAWG_03515 [Candida albicans WO-1]
          Length = 765

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/355 (34%), Positives = 199/355 (56%), Gaps = 13/355 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL ++   +  + +A +V  T IQ KTIP+ L+  D+ G A+TG+GKT +F++P++  
Sbjct: 50  FSDLPITENTLKGLKEATFVSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPVIES 109

Query: 63  LEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         LI+ PTRELA Q+ +   K GK    +  L+ GG   + + +++ R
Sbjct: 110 LIRNKITEYDGLAALIVSPTRELAVQIFEVLTKIGKYNTFSAGLVTGGKDVQFEKERVSR 169

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+ TPGRI  H N    +  +N+++LV+DEADR LDMGF   I NI   +P TRQT
Sbjct: 170 -MNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPTTRQT 228

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTP---SSTAETIEHCFVATYAQYSKKCALLQQ 237
           LLFSAT ++ +  ++   L NP +I V++    S+T E++E  +V       +K  +L  
Sbjct: 229 LLFSATQSESVNDLARLSLTNPNKIGVSSDQEVSATPESLEQYYVK--VPLDEKLDVLWS 286

Query: 238 LLQSQDTMKNGI-IFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            ++S   +K+ I +F +  K V     +    + G S+  ++G   Q SR++    F + 
Sbjct: 287 FIKSH--LKSKILVFFSSSKQVQYTYETFRTLQPGISLMKLYGRHKQTSRLETTMKFSQA 344

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
               + A+D+ ARGLD P +  V   D P  A  Y+HR+GR+ R GR GK+  ++
Sbjct: 345 QHACLFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGRSARFGRKGKSLLML 399


>gi|213612594|ref|ZP_03370420.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 333

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 123/327 (37%), Positives = 183/327 (55%), Gaps = 11/327 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L P+VV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70

Query: 63  LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L    A    +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K 
Sbjct: 71  LLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAA 190

Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235
           Q L  LFSAT++  +++++   + N + +EV     T   I E  F   Y    +K  LL
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q L++ ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G 
Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDV 322
           + ++VA+D+AARGL IP V HVFN+D+
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDL 333


>gi|47028621|gb|AAT09162.1| DEAD box protein AxVH [Ambystoma mexicanum]
          Length = 724

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 127/360 (35%), Positives = 201/360 (55%), Gaps = 17/360 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP+VL R D+   AQTG+GKTA+F+LP+L
Sbjct: 294 LTFEEANLPETLYNNISKAGYTKLTPVQKYSIPIVLARRDLMACAQTGSGKTAAFLLPIL 353

Query: 61  T-ILEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             +++ G     + ++ P  +I+ PTREL  Q+  +  K+     +   ++ GG      
Sbjct: 354 AHLMQDGIPPPTSELQEPEVIIVAPTRELINQIFLDARKFAYRTCIKPVVVYGGTQTIHS 413

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            +++ +G ++L  TPGR++D   R K+ +  +  LV+DEADRMLDMGF P ++ + +   
Sbjct: 414 LRQIYQGCNILCATPGRLIDIIRREKIGLTKLRYLVLDEADRMLDMGFGPDMKTLVTSPG 473

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSK 230
                 RQTL+FSAT  + +Q ++  FL+ P  + V          +    +    QY K
Sbjct: 474 MPTKEERQTLMFSATFPENIQSLAREFLK-PDYLFVTVGQVGGACADVQQKILEVDQYEK 532

Query: 231 KCALLQ--QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           K  L++  Q L  + TM    +F   KK    L   L ++  S  +IHG+  QR R + L
Sbjct: 533 KDKLVEILQGLGKERTM----VFVGTKKMADYLTTLLCQENISATSIHGDRLQREREEAL 588

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           ++F+ G   ++VA+++AARGLDI +V HV N+D+ +  E Y+HRIGRTGR G  GKA + 
Sbjct: 589 ADFRFGKCHVLVATNVAARGLDIENVQHVINYDLSDNIEEYVHRIGRTGRCGNVGKAISF 648


>gi|71030480|ref|XP_764882.1| RNA helicase-1 [Theileria parva strain Muguga]
 gi|68351838|gb|EAN32599.1| RNA helicase-1, putative [Theileria parva]
          Length = 598

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 131/372 (35%), Positives = 201/372 (54%), Gaps = 29/372 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGT----------G 50
           + F D+ L   ++ A+      +PT IQ++ +P VL   DV GI+ TGT          G
Sbjct: 192 LTFEDMKLPRPILKALRHKKIFEPTKIQMQAMPAVLLGRDVIGISPTGTLTKFNLFLGTG 251

Query: 51  KTASFVLPMLTILEKGRARVRMPRT-------LILEPTRELAAQVAD---NFEKYGKNYN 100
           KT  FV+PM  I++     +R+P         L++ P+RELA+Q+ D    F +Y   Y+
Sbjct: 252 KTLVFVIPM--IMQSWEIELRLPIEPREGPFGLVICPSRELASQIYDITKYFAEYISKYD 309

Query: 101 ---LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
              L  A +IGG   + Q   ++ G  ++I TPGR+    N   + +     L  DEADR
Sbjct: 310 RPKLYCACVIGGTGIKDQEHSIKSGVHMVIATPGRLNYFLNSRIINLTQCRYLCFDEADR 369

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           ++D+GF   I++I S V    QTLLFSAT+  ++Q+ ++  L NP  + V    S  + +
Sbjct: 370 IIDLGFDSEIKSIFSHVNNQHQTLLFSATIPSKIQEFAKLTLTNPIVVNVGVSGSANKNV 429

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
           +   VA   + SK   LLQ L ++   +   +IFC  K +V  +   L  +G    AIHG
Sbjct: 430 KQVVVAV-PKESKLPMLLQCLKKTPPPV---LIFCENKADVEIINEYLILKGVEASAIHG 485

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
            + Q  R++ +S+FK     +++ +D+A++GLD P + HV NFD+P   ENY+HRIGRTG
Sbjct: 486 GLSQEERIESISDFKNHKKDVLIGTDIASKGLDFPSIQHVINFDLPRDMENYVHRIGRTG 545

Query: 338 RAGRHGKAFTLV 349
           R G  G A TL+
Sbjct: 546 RRGEKGLATTLL 557


>gi|126654509|ref|XP_001388425.1| ATP-dependent RNA helicase [Cryptosporidium parvum Iowa II]
 gi|126117365|gb|EAZ51465.1| ATP-dependent RNA helicase, putative [Cryptosporidium parvum Iowa
           II]
          Length = 406

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 123/376 (32%), Positives = 197/376 (52%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+FV+P+L 
Sbjct: 34  DFEDYFLKRELLMGIYEKGFERPSPIQEESIPVALAGKDILARAKNGTGKTAAFVIPLL- 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             EK   +  + + LIL PTRELA Q +   ++ GK+ N+   +  GG        +L  
Sbjct: 93  --EKINTKKNIIQGLILVPTRELALQTSSIVKQLGKHINVQCMVSTGGTSLRDDILRLNN 150

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL+ TPGRILD  N+    ++   + ++DEAD++L   F P I+ +   +P  RQ L
Sbjct: 151 PVHVLVGTPGRILDLSNKKVCNLSGCFMFIMDEADKLLSPEFQPIIEELIEFLPKERQIL 210

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    ++   + +L N   I +    +     ++     + +  +K   L  L  S
Sbjct: 211 LYSATFPVTVKGFKDKYLANAHEINLMDELTLKGVTQY---YAFVEEKQKLHCLNTLF-S 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 267 KLQINQAIIFCNSVTRVELLAKKITELGSSCFYIHARMLQSHRNRVFHDFRNGACRCLVS 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  L+  ED  ++  IE
Sbjct: 327 SDLITRGIDIQSVNVVINFDFPKYSETYLHRIGRSGRFGHLGLAINLITYEDRYNLYRIE 386

Query: 362 KLIEKKVDWLNGDLSS 377
           K +  ++  +   + S
Sbjct: 387 KELATEISPIPAQIDS 402


>gi|326384286|ref|ZP_08205967.1| DEAD/DEAH box helicase domain-containing protein [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326196884|gb|EGD54077.1| DEAD/DEAH box helicase domain-containing protein [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 499

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 191/368 (51%), Gaps = 12/368 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   +  A+   G   P PIQ KT+P  L   DV G  +TG+GKT +F +P++T 
Sbjct: 4   FADLGVPTPIADALTAEGKASPFPIQEKTLPDTLSGRDVLGRGKTGSGKTLAFSVPLVTR 63

Query: 63  LEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L +   R +   P  L+L PTRELA Q+A   E       L V  + GG+    Q   L 
Sbjct: 64  LAQACVRRKPGRPTALVLSPTRELATQIATAMEPLAAAVGLRVTTVFGGVKQTRQESALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+++  PGR+ D   +  + +++++I V+DEAD M D+GF+P +  I +  P   Q 
Sbjct: 124 AGADIVVACPGRLEDLMRQRIVSLDDVQITVLDEADHMADLGFLPVVTRILAATPAGGQR 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+ + + K+ + FL  P    + +  S  A+   H F    A  ++K AL+++L 
Sbjct: 184 LLFSATLDNGVDKLVKRFLTKPVTHSLEDATSPVAQMTHHVF--RVASTTEKTALVKELA 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE-GTIQL 298
                    I+F   K     L   L  +G     +HGN+ Q  R + L++F      ++
Sbjct: 242 SG---TGRRILFTRTKHQAKKLAKKLTAEGIPAVDLHGNLSQAQRDRNLASFAAPDGAKV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+ +  V  V + D P   + Y+HR GRT RAG  G   T+   E      
Sbjct: 299 LVATDVAARGVHVDGVELVVHVDPPAEHKAYLHRSGRTARAGSAGDVVTICLPEQWGD-- 356

Query: 359 AIEKLIEK 366
            + KL++K
Sbjct: 357 -LRKLLQK 363


>gi|21627812|emb|CAD37144.1| probable ATP-dependent RNA helicase [Aspergillus fumigatus]
          Length = 750

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 131/391 (33%), Positives = 214/391 (54%), Gaps = 24/391 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F+DL LS      +  + Y   T IQ + I   L+  D+ G A+TG+GKT +F++P+L  
Sbjct: 49  FSDLPLSEPTASGLASSHYKTLTDIQSRAISHALKGRDILGAAKTGSGKTLAFLVPVLEN 108

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  K  A       LIL PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L R
Sbjct: 109 LYRKQWAEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLKEEQERLGR 168

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++  L    N+++LV+DEADR+LD+GF   +  I   +P  RQT
Sbjct: 169 -MNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIIGHLPKERQT 227

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT T ++  ++   LQ+P+ + V+  +S+A    ++  +V T     +K  +L   
Sbjct: 228 LLFSATQTKKVSDLARLSLQDPEYVAVHETASSATPSKLQQHYVIT--PLPQKLDILWSF 285

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++S    K  ++F +  K V  +  S    + G  +  +HG   Q  R+ I++ F +   
Sbjct: 286 IRSNLKSKT-MVFLSSGKQVRFVYESFRHLQPGIPLMHLHGRQKQGGRLDIVTRFSQSKH 344

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++ ++D+AARGLD P V  V   D P  A+ YIHR+GRT R  R G+A   +   + + 
Sbjct: 345 CVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYEREGRAVLFLDPSEEEG 404

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
           +  +++L +KKV            P+EKI+I
Sbjct: 405 M--LKRLEQKKV------------PIEKINI 421


>gi|82705769|ref|XP_727104.1| eukaryotic initiation factor 4a-3 [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23482794|gb|EAA18669.1| eukaryotic initiation factor 4a-3 [Plasmodium yoelii yoelii]
          Length = 390

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 124/376 (32%), Positives = 196/376 (52%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G+   ++  +   G+ KP+ IQ + I  +L   DV   +Q+GTGKT  F +  L  
Sbjct: 19  FESIGIDEGLLRGIYAYGFEKPSAIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGALNC 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + +    +   + +IL PTRELA Q            ++TV   IGG       K L  G
Sbjct: 79  VNRN---ISETQVIILSPTRELAEQTQKVCLALADYIHVTVYCCIGGKKMSEDIKALNNG 135

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGRI    N   L    I+ LVIDEAD ML+ GF   + +I   +    Q +L
Sbjct: 136 VHIISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPNTQIVL 195

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  E+ +++  F+ NP +I V     T E I+  FV+   +   K   L  L +S 
Sbjct: 196 SSATLPHEVLEITNKFMHNPVKILVKRDELTLEGIKQFFVSIEKE-QWKYETLADLYESL 254

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   ++FCN K  V  L   +++  F+VC +H  + Q  R  I+  F++   ++++++
Sbjct: 255 -TITQAVVFCNTKLKVDWLAKKMQESNFTVCKMHAGMSQSERDDIMLKFRQCKYRVLIST 313

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+  RGLD+ +V  V N+D+PN  E+YIHRIGR+GR GR G A   V  +DIK +  IE+
Sbjct: 314 DIWGRGLDVHEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQ 373

Query: 363 LIEKKVDWLNGDLSSL 378
               ++D +  +++ L
Sbjct: 374 FYSTQIDEMPMNITEL 389


>gi|213403328|ref|XP_002172436.1| ATP-dependent RNA helicase dbp8 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000483|gb|EEB06143.1| ATP-dependent RNA helicase dbp8 [Schizosaccharomyces japonicus
           yFS275]
          Length = 456

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 140/426 (32%), Positives = 218/426 (51%), Gaps = 19/426 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+SP +V  +      +PTPIQ   I  VL+  D  G A+TG+GKT +F LP   I
Sbjct: 9   FGSLGISPWLVETLQAVAIQEPTPIQKGVIKKVLEGADCIGGAKTGSGKTIAFALP---I 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEK          +IL PTRELA Q+ + F   G   NL   L++GG+   AQ   L + 
Sbjct: 66  LEKWARDPFGTFAVILTPTRELAIQIDEQFAALGAPMNLKHILVVGGMDMVAQAIALSKR 125

Query: 123 ADVLICTPGRILDHF----NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176
             +++ TPGR+ D            ++  + +V DEADR+L   F   + +   ++P   
Sbjct: 126 PHIVVATPGRLADLIRSNGEETYASLHRTQFVVFDEADRLLSPTFADDLDDCLEVLPPPE 185

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPK----RIEVNTPS-STAETIEHCFVATYAQYSKK 231
            RQTLLF+ATMTD ++ + +      K      EV+T   S  E++E  ++   A + + 
Sbjct: 186 KRQTLLFTATMTDAIRALKDREPHPGKPPLWLYEVDTEGVSIPESLEQHYLLV-ASHVRD 244

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L+Q L   ++  K+ I+F N+   V  L   L    F V  +H  + QR R+  L  F
Sbjct: 245 AYLVQLLSSPENEDKSVIVFANRTYTVELLYRMLRLLDFRVTCLHSEMAQRERVNSLGRF 304

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +    ++++A+D+A+RGLDIP V  V N+D+P   ++Y+HR+GR  R GR G++ + V +
Sbjct: 305 RAEAARVLIATDVASRGLDIPSVKMVVNYDIPRDPDDYVHRVGRAARVGRFGESVSFVTE 364

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            D+  I AIE  + K++        S N  LEK+   Q N A++   +      F  R+K
Sbjct: 365 HDVDLIHAIEDRVGKQMTAYES--FSENKMLEKLK--QINEAKRKVSLELVDEDFGSRRK 420

Query: 412 NYSSQK 417
               ++
Sbjct: 421 KLKEKR 426


>gi|195011457|ref|XP_001983158.1| GH15746 [Drosophila grimshawi]
 gi|193896640|gb|EDV95506.1| GH15746 [Drosophila grimshawi]
          Length = 786

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 113/354 (31%), Positives = 196/354 (55%), Gaps = 6/354 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +GL  +++  +   GY  PTPIQ KTIPL+L+  DV  +A+TG+GKTA F++P+   L++
Sbjct: 1   MGLGFELLKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQR 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
            R   +  R LIL PTRELA Q     ++ G+   L   L++GG   ++Q   +    DV
Sbjct: 61  -REPTKGARALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHTCPDV 119

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           ++ TPGR L       L + +IE +V DEADR+ +MGF   +    + +P +RQ ++FSA
Sbjct: 120 IVATPGRFLHLCVEMDLKLTSIEYVVFDEADRLFEMGFGEQLNETLNRLPASRQMVMFSA 179

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ--YSKKCALLQQLLQSQD 243
           T+   L + +   L +P  I ++  S   + +   FV    +  ++    LL+ ++  Q 
Sbjct: 180 TLPKLLVEFARAGLSDPVLIRLDVESKLPDALALKFVYCRPEDRFTALVVLLKYVIPQQ- 238

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
                ++F   + +V  + + L + G S  +++ ++D  +R    + F    + ++V +D
Sbjct: 239 --AQTVVFVGTQHHVELISYILSQSGISNTSVYSSLDAAARKINTAKFASKKVSVLVVTD 296

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +AARG+DIP + +V N   P   + ++HR+GR  RAGR G A+++ + +D  H+
Sbjct: 297 VAARGIDIPSLDYVVNLHFPGIPKLFVHRVGRCARAGRTGTAYSIFSTDDTAHL 350


>gi|311111123|ref|ZP_07712520.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           gasseri MV-22]
 gi|311066277|gb|EFQ46617.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           gasseri MV-22]
          Length = 461

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 203/367 (55%), Gaps = 15/367 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    + P++   +    + KPT +Q   IP +L    V   A TG+GKT +++LP+L +
Sbjct: 8   FQSEKIRPELRAGLEKINFSKPTKVQAAVIPALLSNKSVVVQAATGSGKTHAYLLPLLNM 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQ---VADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +++      + + ++  P+RELA Q   VA    +     N+++  L GG     Q +K 
Sbjct: 68  IDENAP---VTQAVVTAPSRELANQLYKVARQL-RDASGLNISIEYLGGGNDRNRQIEKA 123

Query: 120 E-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           E R   ++I TPGR+ D  ++  + ++N++  +IDEAD  LDMGF+  +  I S     +
Sbjct: 124 ENRAPQLIIATPGRLHDFASKKVINLDNVKAFIIDEADMTLDMGFLSQMDEIIS--KLDK 181

Query: 179 QTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + +L  FSAT+  +L+     ++  P  I ++ P+  A TI++  +   ++  KK  L +
Sbjct: 182 KVVLGAFSATIPVKLENFLRKYMSKPDFIVIDNPAIIAPTIQNDLIDVGSR-DKKEILYK 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L   Q  +   ++F N KK V  L + LE+QG  V  IHG I +R R +I+   +EG  
Sbjct: 241 LLTMGQPYL--ALVFANTKKTVDELTNYLEEQGLKVAKIHGGITERERKRIIRQVREGQY 298

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VASDLAARG+D+P V  V N+++P   E  IHRIGRTGR G  G A TL+  E++  
Sbjct: 299 QYVVASDLAARGIDVPGVSLVVNYEIPKDLEFVIHRIGRTGRNGLEGHAITLIYDEEMPQ 358

Query: 357 IDAIEKL 363
           I+ +EKL
Sbjct: 359 IEDLEKL 365


>gi|156083314|ref|XP_001609141.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
           containing protein [Babesia bovis T2Bo]
 gi|154796391|gb|EDO05573.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
           containing protein [Babesia bovis]
          Length = 994

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 121/357 (33%), Positives = 198/357 (55%), Gaps = 7/357 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+  GL   ++  +    Y KP PIQ++ IP ++   DV  IA+TG+GKT +++LP + 
Sbjct: 389 NFSQCGLPDPILSLLQRRNYEKPFPIQMQCIPALMCGRDVLAIAETGSGKTMAYLLPAIR 448

Query: 62  -ILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L + + R       LI+ PTRELA+Q+     K  K   +    + GG P   Q   L
Sbjct: 449 HVLYQPKLRENEGMIVLIIAPTRELASQIGVESSKLCKLVGIRTKAVYGGSPIGEQLNAL 508

Query: 120 ERGADVLICTPGRILD--HFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RG +++  TPGR+++    + GK+  +  +  +VIDEADRM D+GF P I  I   +  
Sbjct: 509 KRGVEIVCGTPGRLIEVLTISNGKVTNLRRVTFVVIDEADRMFDLGFSPQISAIVDNIRP 568

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT LFSAT    ++ +++  L  P +I V     +A  ++   V    +  K  ALL+
Sbjct: 569 DRQTALFSATFPPTIEALAKKILTKPLQIIVGESGKSASQVDQ-HVMVLPERQKMYALLK 627

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            LL       + I+F N++ +  ++   L K G+    +HG  DQ  R   L +F++GT 
Sbjct: 628 -LLGEWHEHGSIIVFVNRQLDADSMYAELIKHGYDCAVLHGGQDQTDREFTLQDFRDGTK 686

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            +++A+ +AARG+D+ +V  V N+  P+  E+Y+HR+GRTGRAG  G ++T +  E+
Sbjct: 687 GILIATSIAARGIDVKNVVLVINYATPDHIEDYVHRVGRTGRAGNIGTSYTFITPEE 743


>gi|116629091|ref|YP_814263.1| superfamily II DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238853834|ref|ZP_04644199.1| dead/deah box helicase domain protein [Lactobacillus gasseri 202-4]
 gi|116094673|gb|ABJ59825.1| Superfamily II DNA and RNA helicase [Lactobacillus gasseri ATCC
           33323]
 gi|238833529|gb|EEQ25801.1| dead/deah box helicase domain protein [Lactobacillus gasseri 202-4]
          Length = 464

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 203/367 (55%), Gaps = 15/367 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    + P++   +    + KPT +Q   IP +L    V   A TG+GKT +++LP+L +
Sbjct: 11  FQSEKIRPELRAGLEKINFSKPTKVQAAVIPALLSNKSVVVQAATGSGKTHAYLLPLLNM 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQ---VADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +++      + + ++  P+RELA Q   VA    +     N+++  L GG     Q +K 
Sbjct: 71  IDENAP---VTQAVVTAPSRELANQLYKVARQL-RDASGLNISIEYLGGGNDRNRQIEKA 126

Query: 120 E-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           E R   ++I TPGR+ D  ++  + ++N++  +IDEAD  LDMGF+  +  I S     +
Sbjct: 127 ENRAPQLIIATPGRLHDFASKKVINLDNVKAFIIDEADMTLDMGFLSQMDEIIS--KLDK 184

Query: 179 QTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + +L  FSAT+  +L+     ++  P  I ++ P+  A TI++  +   ++  KK  L +
Sbjct: 185 KVVLGAFSATIPVKLENFLRKYMSKPDFIVIDNPAIIAPTIQNDLIDVGSR-DKKEILYK 243

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L   Q  +   ++F N KK V  L + LE+QG  V  IHG I +R R +I+   +EG  
Sbjct: 244 LLTMGQPYL--ALVFANTKKTVDELTNYLEEQGLKVAKIHGGITERERKRIIRQVREGQY 301

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VASDLAARG+D+P V  V N+++P   E  IHRIGRTGR G  G A TL+  E++  
Sbjct: 302 QYVVASDLAARGIDVPGVSLVVNYEIPKDLEFVIHRIGRTGRNGLEGHAITLIYDEEMPQ 361

Query: 357 IDAIEKL 363
           I+ +EKL
Sbjct: 362 IEDLEKL 368


>gi|311897074|dbj|BAJ29482.1| putative ATP-dependent RNA helicase [Kitasatospora setae KM-6054]
          Length = 487

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 181/347 (52%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L   ++  +   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 48  FEELELPGGLLTILARRGVTSPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAVLAR 107

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               +A  R P  L+L PTRELA QV +    Y     L +A ++GG+P   Q + L RG
Sbjct: 108 TTGQQAEPRQPLALVLVPTRELAQQVTEALTPYAHAAKLRMATVVGGVPVRRQAQVLNRG 167

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A++++ TPGR+ D   R    ++ + + V+DEAD+M DMGF+P +  +   V    QT+L
Sbjct: 168 AEIVVATPGRLGDLIERRLCRLDRVAVTVLDEADQMTDMGFLPDVTALLEQVAEGGQTML 227

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   FL++P    V+  +    T+EH  +  + + + K A +  +    
Sbjct: 228 FSATLDRNVDSLVRRFLKDPVTHSVDPSAGAVGTMEHHVL--HVRGADKDATIAHIASRD 285

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F + K     L  +L   G    A+HG   Q  R + L  F+ G +  +VA+
Sbjct: 286 GRV---IMFTDTKHGADRLVAALLANGVKAAALHGGKSQPQRTRTLEQFRGGLVDALVAT 342

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+ +  +  V N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 343 DVAARGIHVDGLDLVVNLDPPADHKDYLHRGGRTARAGESGTVVTLV 389


>gi|315045866|ref|XP_003172308.1| ATP-dependent RNA helicase DBP4 [Arthroderma gypseum CBS 118893]
 gi|311342694|gb|EFR01897.1| ATP-dependent RNA helicase DBP4 [Arthroderma gypseum CBS 118893]
          Length = 818

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 129/392 (32%), Positives = 209/392 (53%), Gaps = 26/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DL LS      +  + + + T IQ + IP  LQ  D+ G A+TG+GKT +F++P+L  
Sbjct: 52  FTDLPLSEATRLGLSASHFKELTDIQSRAIPHALQGRDILGAAKTGSGKTLAFLVPVLEN 111

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  K          +I+ PTRELA Q+ +   K G+++  +  L+IGG   + + ++L R
Sbjct: 112 LFRKQWTEYDGLGAMIISPTRELAIQIFEVLRKIGRHHTFSAGLVIGGKSLQEEQERLGR 171

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++      +NI++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 172 -MNILVCTPGRMLQHMDQTAAFDTDNIQMLVLDEADRIMDMGFQSTVDAIVEHLPKERQT 230

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYSKKCALLQQL 238
           +LFSAT T ++  ++   LQ+P+ I V+  +S+A   T++  +V T      K   L   
Sbjct: 231 MLFSATQTKKVSDLARLSLQDPEYISVHEAASSATPSTLQQHYVVT--PLPDKLDTLWSF 288

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ---GFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++S  ++K+ II        V   +   +Q   G  +  +HG   Q +R+ I   F    
Sbjct: 289 IRS--SVKSKIIVFFSSSKEVRFVYEAFRQMQPGIPLLHLHGRQKQGARLDITHKFSASK 346

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
              + A+D+ ARGLD P V  V   D P  ++ YIHR+GRT R  R G+A   +  +  +
Sbjct: 347 NSCLFATDVVARGLDFPAVDWVIQLDCPEDSDTYIHRVGRTARYERDGRAVLFL--DPSE 404

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
            I  + +L +KK+            P+EKI+I
Sbjct: 405 EIGMLSRLEQKKI------------PIEKINI 424


>gi|156085513|ref|XP_001610166.1| ATP-dependent RNA helicase [Babesia bovis T2Bo]
 gi|154797418|gb|EDO06598.1| ATP-dependent RNA helicase, putative [Babesia bovis]
          Length = 433

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 124/361 (34%), Positives = 191/361 (52%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L  HD+   A+ GTGKTA+FV+P+L 
Sbjct: 61  EFEDYFLKRELLMGIFEKGFEKPSPIQEESIPVALAGHDILARAKNGTGKTAAFVIPLLE 120

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L      ++    LIL PTRELA Q +   ++ GK  ++   +  GG        +L +
Sbjct: 121 KLNTSNNHIQ---GLILLPTRELALQTSAVVKELGKYLDVQCMVSTGGTSLRNDIVRLYK 177

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL  TPGRILD  N+    ++   ++++DEAD+ML   F P I+ +   +P  +Q +
Sbjct: 178 PVHVLCGTPGRILDLTNKNVADLSKCHVVILDEADKMLSAEFQPIIEALLRFLPTEKQMI 237

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    +QK  E++L N   I +     T + I   +   Y +  +K   L  L  S
Sbjct: 238 LYSATFPMSVQKFKESYLPNAHEINL-MDELTLKGITQYY--AYVEERQKIHCLSTLF-S 293

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + GFS   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 294 RLQINQAIIFCNSVSRVELLAKKITELGFSCFYIHARMLQAHRNRVFHDFRNGACRCLVS 353

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D   V  V NFD P  +  Y+HRIGR+GR G  G A  LV   D + +  IE
Sbjct: 354 SDLFTRGIDFRFVNVVINFDFPKTSATYLHRIGRSGRFGHLGLAINLVTLADKEALFRIE 413

Query: 362 K 362
           +
Sbjct: 414 E 414


>gi|71745728|ref|XP_827494.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70831659|gb|EAN77164.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
          Length = 735

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 126/362 (34%), Positives = 200/362 (55%), Gaps = 21/362 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DL + P +   +   GY +PTP+Q   IP+ L  +D+   AQTG+GKTA+F++P++  
Sbjct: 291 FEDLFVEPALALNIAKCGYKEPTPVQRYGIPVCLNGNDLMACAQTGSGKTAAFLVPVVHY 350

Query: 62  ILEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           IL+ G    + R+  P  +I+ PTRELA Q+ D   K     ++   ++ GG P+  + +
Sbjct: 351 ILKNGVSPAKDRISHPIAVIMAPTRELALQIYDEVRKLTFRTDIFYDVVYGGTPYPTRFE 410

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT----SL 173
                 D+L+  PGR+ D F+R  +  + ++ L++DEADRML+MGF   I+ +     S 
Sbjct: 411 N-----DILVACPGRLKDIFDRNIVSFSCVKFLILDEADRMLEMGFEEQIEYLVASRYSD 465

Query: 174 VPFT--RQTLLFSATMTDELQKVSENFLQNPKR--IEVNTPSSTAETIEHCFVATYAQYS 229
           +P +  RQTL+FSAT    +  +++ +L+ PK   + V    ST + I    +    +  
Sbjct: 466 MPSSEERQTLMFSATFPQRILNLAKRYLR-PKYYLLTVGRVGSTTKNITQK-LERVPEAE 523

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           KK  L   ++  Q      +IF   K++   L  +L+  G     IHG+  Q  R   L 
Sbjct: 524 KKDKLFD-IIYKQKQTDLVLIFVETKRSAEQLHSALKSSGIPSTTIHGDRRQSDREIALK 582

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK G   ++VA+D+A+RGLDIP+V HV  +D+P   ++Y HRIGRTGRAG  G A +  
Sbjct: 583 DFKSGITPILVATDVASRGLDIPNVAHVIQYDLPKEMDDYTHRIGRTGRAGNKGVATSFY 642

Query: 350 AK 351
            +
Sbjct: 643 DR 644


>gi|303288978|ref|XP_003063777.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454845|gb|EEH52150.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 574

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 214/375 (57%), Gaps = 22/375 (5%)

Query: 10  PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
           PK +  +L+  G+ +P+ +Q    P+  +  D+  IA+TG+GKT +F+LP L +  + + 
Sbjct: 147 PKPLVTLLNRQGFAEPSAVQGAAWPIASRGLDLLAIAKTGSGKTLAFLLPALALAAEHKN 206

Query: 69  RVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
             R  P  L + PTRELA Q+     K+G         + GG P  AQ  +L+RG +++I
Sbjct: 207 SSRGSPLALCMSPTRELALQICAEATKFGAAVGCRAVAVYGGAPKWAQASQLQRGCELII 266

Query: 128 CTPGRILDHF---NRGK---LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            TPGR+LD     N+G      + + ++L++DEADRMLDMGF   I+ I   +P  R+T+
Sbjct: 267 ATPGRMLDMLDMHNKGGNPVTSLASAKVLILDEADRMLDMGFEKDIRQIAECMPADRRTM 326

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNT-------PSSTAETIEHCFVATYAQYSKKCAL 234
           LF+AT    +QK++ + L+ P R+++          ++ A T     +    ++++   L
Sbjct: 327 LFTATWPKNVQKIAADLLK-PDRVKITVGNGGDKLTANKAVTQTVKVIEAREKWTEFLKL 385

Query: 235 LQQLLQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
           +++    +D  ++G   +IFCN KK+V  +   L  +G++   + G+  QR R  +++ F
Sbjct: 386 MEEY--KKDGPRHGQRVMIFCNTKKDVNGIGEHLWNEGYAADTVSGDRTQREREAVIAAF 443

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA-ENYIHRIGRTGRAGRHGKAFTLVA 350
           + G+  ++V +D+AARG+D+  V  V N+D P  A ++YIHRIGRTGRAG  G A TL  
Sbjct: 444 RRGSTTMVVCTDVAARGIDVQGVEAVVNYDFPRDACDDYIHRIGRTGRAGAKGVAHTLFT 503

Query: 351 KEDIKHIDAIEKLIE 365
           ++D +    + +++E
Sbjct: 504 RQDGRFAKELTRILE 518


>gi|115434952|ref|NP_001042234.1| Os01g0184500 [Oryza sativa Japonica Group]
 gi|75321764|sp|Q5VRY0|RH39_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 39
 gi|55295927|dbj|BAD67795.1| putative VASA [Oryza sativa Japonica Group]
 gi|113531765|dbj|BAF04148.1| Os01g0184500 [Oryza sativa Japonica Group]
 gi|222617875|gb|EEE54007.1| hypothetical protein OsJ_00660 [Oryza sativa Japonica Group]
          Length = 625

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 132/382 (34%), Positives = 195/382 (51%), Gaps = 21/382 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL  +V+ A+ + G  KPT IQ   +P VL    V   + TG+GKT +++LP++ +
Sbjct: 112 FEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQL 171

Query: 63  LEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           L +  A      + R PR ++L PTREL  QV    +    +      ++ GG     Q 
Sbjct: 172 LRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVFRVAKSISHHARFRSTMVSGGSRIRPQE 231

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L    D+++ TPGRILDH   G ++  +I+ LV+DEAD M D GF P I+    L P 
Sbjct: 232 DSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKF--LAPL 289

Query: 177 TR----------QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                       QT+L +ATMT  +QK+ +   +    +   T      T  H F+    
Sbjct: 290 KNRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTTTFQKRVATARHDFIKLSG 349

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
             +K  ALLQ L  S       ++FCN   +   + H L +   S    HG +    R++
Sbjct: 350 SENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVE 409

Query: 287 ILSNFK--EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            L+ F+  EG    +V +DLAARGLD+ DV HV  FD P+ + +Y+HR GRT R G  GK
Sbjct: 410 NLNKFRNEEGDCPTLVCTDLAARGLDL-DVDHVIMFDFPSNSIDYLHRTGRTARMGAKGK 468

Query: 345 AFTLVAKEDIKHIDAIEKLIEK 366
             +LVAK+D+     IE+ ++K
Sbjct: 469 VTSLVAKKDVTLATRIEEAMKK 490


>gi|11890755|gb|AAF78930.2|AAF78930 RNA helicase II/Gu protein [Homo sapiens]
          Length = 715

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 130/355 (36%), Positives = 200/355 (56%), Gaps = 21/355 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ KT   V    D+   A+TGTGKT SF +P++  
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179

Query: 63  LE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L    + R R R P+ L+L PTREL  QV+ +F    K   L+VA   GG P+  Q +++
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELCNQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 237

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   GKL +  ++ +V+DE D+MLDMGF   ++ I S V + + 
Sbjct: 238 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILS-VAYKKD 296

Query: 179 -----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSK 230
                QTLLFSAT    +  V++ ++++  +++++       TA T+EH  +A    +++
Sbjct: 297 SEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEH--LAIKCHWTQ 354

Query: 231 KCALLQQLLQSQDTMKN-GIIFCNQKKNVVNLCH-SLEKQGFSVCAIHGNIDQRSRMKIL 288
           + A++  +++     +   IIFC  KK    L   S  KQ     ++HG+I Q+ R   L
Sbjct: 355 RAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ--DAQSLHGDIPQKQREITL 412

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
             F+ G+  ++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 413 KGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTG 467


>gi|301112328|ref|XP_002905243.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262095573|gb|EEY53625.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 709

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 130/421 (30%), Positives = 225/421 (53%), Gaps = 24/421 (5%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           Y +PT +Q++ IP +L R DV   A TG+GKTA+F +P+L  L  G       R+++L P
Sbjct: 268 YKEPTSVQMQAIPSLLLRRDVLATAPTGSGKTAAFAIPILANLAAGSGTSSGIRSIVLAP 327

Query: 81  TRELAAQVADNFEKY--GKNYNLTVALLIGGIPFEAQNK-KLERGADVLICTPGRILDHF 137
           TR+LA Q+   F +   GK  ++T+          +Q K KL    DVLI TP R++   
Sbjct: 328 TRDLAVQIRAEFTRLAAGKKLHITLLSKATAATIASQTKSKLAVNHDVLIATPLRLVHLI 387

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR-QTLLFSATMTDELQKVSE 196
              K+ ++ +E++ +DEADR+L++GF+  +  I +     + Q  +FSATM + ++++++
Sbjct: 388 QESKVDLSTVEMVCLDEADRLLELGFVEQVDEIFAACTHPKVQRAMFSATMLEGVEELAQ 447

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
             L++P ++ V T ++ A TI+   V    +  K  A+  + L  Q      ++F   K+
Sbjct: 448 TVLRDPVKVAVGTKNAGASTIDQKLVFVGKEEGKLVAM--KQLLQQGLQLPALLFVQNKE 505

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
               L H L   G ++ A+H +  +  R  ++  F+ G + +++ +DL +RG+D   V  
Sbjct: 506 RANELYHELLYDGVNIGAVHADRTKEQRDDVIRRFRTGEVWVLICTDLMSRGMDFKAVNM 565

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE----KKVDWLN 372
           V N+D P  A +YIHRIGRTGR GR GKA TL  ++D+ ++  I  +++    +  DW+ 
Sbjct: 566 VINYDFPQSAVSYIHRIGRTGRNGRKGKAVTLFTEDDMVYLRTIANVMKISGCEVPDWM- 624

Query: 373 GDLSSLNPPLEKIDIAQHNHARKNNPIPQK---STGFDRRKKNYSSQKSH---IPLKESE 426
             LS     L+K  +++     K  P+  +    +G+D ++ N   Q       P K+ E
Sbjct: 625 --LS-----LKKASVSKRKELLKAPPMRHRINTVSGYDLQRANRLKQMKQGKTTPKKDGE 677

Query: 427 K 427
           +
Sbjct: 678 Q 678


>gi|209559794|ref|YP_002286266.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131]
 gi|209540995|gb|ACI61571.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131]
          Length = 447

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 130/366 (35%), Positives = 200/366 (54%), Gaps = 13/366 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      V  A+ + G+V PT +Q + IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDYHFKQYVQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L++ +A V++   +I  P+RELA Q+ D      KY +   + +A  +GG     Q +
Sbjct: 61  EKLDETKAEVQV---VITAPSRELATQIFDVCKQIAKYSQE-EIRLANYVGGTDKLRQIE 116

Query: 118 KLERGAD--VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           KL +G+   ++I TPGRI D    G L ++     V+DEAD  +DMGF+  +  I + +P
Sbjct: 117 KL-KGSQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDMVDKIAASLP 175

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            + Q L+ SAT+  +LQ   + +L NP   ++ T +  A+TI++  V+T  +  K   LL
Sbjct: 176 KSVQILVVSATIPQKLQPFLKKYLTNPVIEQIKTKTVIADTIDNWLVSTKGR-DKNGQLL 234

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + L   Q  M   ++F N K+   +L   L   G  V  IHG I  R R +I++  K+  
Sbjct: 235 EILKTMQPYM--AMLFVNTKERADDLHAFLTANGLKVAKIHGGIPPRERKRIMNQVKKLD 292

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D  
Sbjct: 293 FEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDS 352

Query: 356 HIDAIE 361
            I  +E
Sbjct: 353 DIKELE 358


>gi|297461605|ref|XP_615157.4| PREDICTED: DEAD box RNA helicase DP97-like [Bos taurus]
          Length = 880

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 120/330 (36%), Positives = 184/330 (55%), Gaps = 6/330 (1%)

Query: 30  KTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVA 89
           KTIP++L   DV  +A+TG+GKTA F++PM   L+   A+    R LIL PTRELA Q  
Sbjct: 129 KTIPMILDGKDVVAMARTGSGKTACFLIPMFERLKTHSAQT-GARALILSPTRELALQTM 187

Query: 90  DNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEI 149
              ++ GK   L  AL++GG   E Q   L    D++I TPGR++       L + ++E 
Sbjct: 188 KFTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 247

Query: 150 LVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT 209
           +V DEADR+ +MGF   +Q I   +P   QT+LFSAT+   L + +   L  P  I ++ 
Sbjct: 248 VVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDV 307

Query: 210 PSSTAETIEHCF--VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
            S   E ++  F  V   A+ +    LL+ +++ QD     ++F   K +   L   L  
Sbjct: 308 DSKLNEQLKTSFFLVREDAKAAVLLHLLRNVVRPQDQT---VVFVATKHHAEYLSELLAT 364

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
           QG S   I+  +DQ +R   L+ F  G    ++ +DLAARGLDIP + +V N+  P + +
Sbjct: 365 QGVSCAHIYSALDQTARKINLARFTHGKCSALIVTDLAARGLDIPLLDNVINYSFPAKGK 424

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++HR+GR  RAGR G A++LVA +++ ++
Sbjct: 425 LFLHRVGRVARAGRSGTAYSLVAPDEVPYL 454


>gi|328957654|ref|YP_004375040.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4]
 gi|328673978|gb|AEB30024.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4]
          Length = 451

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 131/365 (35%), Positives = 197/365 (53%), Gaps = 11/365 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL P ++ A+ + G+ KPT +Q K IP +     V G +QTG+GKT +F+LP++  
Sbjct: 5   FEKFGLQPFLIDAINEIGFTKPTEVQEKLIPAIKSGKSVIGQSQTGSGKTHTFLLPLINK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKKLE 120
           ++  R  V++   +I  P+RELA Q+     +  +     + V   +GG   + Q  KL 
Sbjct: 65  IDPSRKEVQV---VITTPSRELAEQIYQAALQLVEKAPAKIIVQNFVGGTDKKRQITKLA 121

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++I TPGRILD      LL+    +LVIDEAD  LDMGF+  +  I S +P   Q
Sbjct: 122 GTQPHIVIGTPGRILDLVTEKALLIYTSPVLVIDEADMTLDMGFLTDVDQIASKLPEKLQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+  +LQ   + ++ NP   ++   +  + TIE+  ++T  +   +  ++ +LL
Sbjct: 182 MLVFSATIPIKLQPFLKKYMSNPLFEQIQPKAIISPTIENWLISTKGK--DRIDVIYELL 239

Query: 240 Q-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q  +   +IF N K  V  L   L+ +G  V  IHG+I  R R +++   +    Q 
Sbjct: 240 TIGQPYLV--MIFANTKSKVDELADGLKSRGIKVAKIHGDIPPRERKRVMKQVQNLEYQF 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N ++P     +IHR+GRTGR    G A TL A  D   I 
Sbjct: 298 VVATDLAARGIDIEGVSHVINAEIPRDLSFFIHRVGRTGRNNLKGTAITLYAPSDENLII 357

Query: 359 AIEKL 363
            IEKL
Sbjct: 358 DIEKL 362


>gi|239989321|ref|ZP_04709985.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
           11379]
          Length = 527

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 119/347 (34%), Positives = 181/347 (52%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L +   +  A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 85  FGELEMPAPLKQALATEGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 144

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  + P  L+L PTRELA QV D    Y ++  L +A ++GG+    Q   L  G
Sbjct: 145 TAGRRADAKRPLALVLVPTRELAQQVTDALTPYARSLKLRLATVVGGMSIGRQASALRGG 204

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D   R    ++ + + V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 205 AEVVVATPGRLKDLIERRDCKLDRVTVTVLDEADQMADMGFMPQVTELLDQVNPDGQRML 264

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L++P    V+  +    T+EH  +  Y Q + K A   ++    
Sbjct: 265 FSATLDRNVDLLVRTYLKDPVVHSVDPAAGAVTTMEHHVL--YVQGADKYATTTEIAARD 322

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F + K  V  L   L   G    A+HG   Q  R + L  FK G + ++VA+
Sbjct: 323 GRV---IMFLDTKHAVDKLTDHLLHSGVRAAALHGGKSQPQRTRTLDRFKTGQVTVLVAT 379

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 380 NVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLV 426


>gi|163790997|ref|ZP_02185419.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
 gi|159873736|gb|EDP67818.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
          Length = 449

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 198/365 (54%), Gaps = 11/365 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL P ++ A+ + G+ +PT +Q K IP +     V G +QTG+GKT +F+LP++  
Sbjct: 5   FEKFGLQPFLIDAITEIGFTQPTEVQQKLIPAIQNGKSVIGQSQTGSGKTHTFLLPLVNK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKLE 120
           ++  R  V++   +I  P+RELA Q+     +  +     + V   +GG   + Q  KL 
Sbjct: 65  IDPSRKEVQV---VITTPSRELAEQIYQAALQLVEKAPTKIIVQNFVGGTDKKRQMTKLS 121

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++I TPGRILD      LL++   +LVIDEAD  LDMGF+  +  I S +P   Q
Sbjct: 122 GTQPHIVIGTPGRILDLVTEKSLLIHTSPVLVIDEADMTLDMGFLTDVDQIASKLPEKLQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+  +LQ   + ++ NP   ++   +  + TI++  ++T  +   +  ++ +LL
Sbjct: 182 MLVFSATIPIKLQPFLKKYMSNPLFEQIQPKAIISPTIDNWLISTKGK--DRIDVIYELL 239

Query: 240 Q-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q  +   +IF N K  V  L   L+ +G  V  IHG+I  R R +++   +    Q 
Sbjct: 240 TIGQPYLV--MIFANTKSKVDELADGLKSRGLKVAKIHGDIPPRERKRVMKQVQNLEYQF 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N ++P     +IHR+GRTGR    G A TL A  D   I 
Sbjct: 298 VVATDLAARGIDIEGVSHVINAEIPRDLSFFIHRVGRTGRNNLKGTAITLYAPSDENLII 357

Query: 359 AIEKL 363
            IEKL
Sbjct: 358 DIEKL 362


>gi|261331698|emb|CBH14692.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 738

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 126/359 (35%), Positives = 199/359 (55%), Gaps = 21/359 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DL + P +   +   GY +PTP+Q   IP+ L  +D+   AQTG+GKTA+F++P++  
Sbjct: 294 FEDLFVEPALALNIAKCGYKEPTPVQRYGIPVCLNGNDLMACAQTGSGKTAAFLVPVVHY 353

Query: 62  ILEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           IL+ G    + R+  P  +I+ PTRELA Q+ D   K     ++   ++ GG P+  + +
Sbjct: 354 ILKNGVSPAKDRISHPIAVIMAPTRELALQIYDEVRKLTFRTDIFYDVVYGGTPYPTRFE 413

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT----SL 173
                 D+L+  PGR+ D F+R  +  + ++ L++DEADRML+MGF   I+ +     S 
Sbjct: 414 N-----DILVACPGRLKDIFDRNIVSFSCVKFLILDEADRMLEMGFEEQIEYLVASRYSD 468

Query: 174 VPFT--RQTLLFSATMTDELQKVSENFLQNPKR--IEVNTPSSTAETIEHCFVATYAQYS 229
           +P +  RQTL+FSAT    +  +++ +L+ PK   + V    ST + I    +    +  
Sbjct: 469 MPSSEERQTLMFSATFPQRILNLAKRYLR-PKYYLLTVGRVGSTTKNITQK-LERVPEAE 526

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           KK  L   ++  Q      +IF   K++   L  +L+  G     IHG+  Q  R   L 
Sbjct: 527 KKDKLFD-IIYKQKQTDLVLIFVETKRSAEQLHSALKSSGIPSTTIHGDRRQSDREIALK 585

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +FK G   ++VA+D+A+RGLDIP+V HV  +D+P   ++Y HRIGRTGRAG  G A + 
Sbjct: 586 DFKSGITPILVATDVASRGLDIPNVAHVIQYDLPKEMDDYTHRIGRTGRAGNKGVATSF 644


>gi|118469993|ref|YP_885922.1| ATP-dependent RNA helicase [Mycobacterium smegmatis str. MC2 155]
 gi|118171280|gb|ABK72176.1| ATP-dependent RNA helicase [Mycobacterium smegmatis str. MC2 155]
          Length = 460

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 117/349 (33%), Positives = 179/349 (51%), Gaps = 7/349 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL  ++V  +   G   P PIQ  T+P  L   DV G  +TG+GKT +F+LP++  
Sbjct: 7   FAELGLPAELVSTLAANGVTTPFPIQAATLPDSLNGRDVLGRGRTGSGKTYAFLLPLVAR 66

Query: 63  LE-KGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L   G  R    PR +IL PTREL  Q+  +         L    + GG+    Q   L 
Sbjct: 67  LATSGTPRDAGKPRAVILAPTRELVTQIEASLAPLAAATGLRTVNIFGGVGAGPQIAALR 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D++I  PGR+ DH       ++++E+ ++DEAD M D+GF+P ++ +    P   Q 
Sbjct: 127 RGVDIVIACPGRLEDHVQSRHADLSSVEVTILDEADHMADLGFLPGVKRLLDRTPKHCQR 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+   +  + + +L +P    V++  S    + H     +  +    A +  +  
Sbjct: 187 LLFSATLDAGVDVLVKRYLHDPVVHSVDSAQSPVSAMVH-----HVLHVDNAARINVVAD 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K    NL   L  +G S   +HGN+ Q +R + L+ F +G+  +MV
Sbjct: 242 LAAAPGRTIVFARTKHGAKNLTRQLNSRGISAVELHGNLSQNARTRNLTAFSDGSATVMV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           A+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   TL+
Sbjct: 302 ATDIAARGIHVDDVSLVVHADPPVEHKAYLHRSGRTARAGNEGTVVTLM 350


>gi|282852128|ref|ZP_06261485.1| DEAD/DEAH box helicase [Lactobacillus gasseri 224-1]
 gi|282556692|gb|EFB62297.1| DEAD/DEAH box helicase [Lactobacillus gasseri 224-1]
          Length = 415

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 203/367 (55%), Gaps = 15/367 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    + P++   +    + KPT +Q   IP +L    V   A TG+GKT +++LP+L +
Sbjct: 11  FQSEKIRPELRAGLEKINFSKPTKVQAAVIPALLSNKSVVVQAATGSGKTHAYLLPLLNM 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQ---VADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +++      + + ++  P+RELA Q   VA    +     N+++  L GG     Q +K 
Sbjct: 71  IDENAP---VTQAVVTAPSRELANQLYKVARQL-RDASGLNISIEYLGGGNDRNRQIEKA 126

Query: 120 E-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           E R   ++I TPGR+ D  ++  + ++N++  +IDEAD  LDMGF+  +  I S     +
Sbjct: 127 ENRAPQLIIATPGRLHDFASKKVINLDNVKAFIIDEADMTLDMGFLSQMDEIIS--KLDK 184

Query: 179 QTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + +L  FSAT+  +L+     ++  P  I ++ P+  A TI++  +   ++  KK  L +
Sbjct: 185 KVVLGAFSATIPVKLENFLRKYMSKPDFIVIDNPAIIAPTIQNDLIDVGSR-DKKEILYK 243

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L   Q  +   ++F N KK V  L + LE+QG  V  IHG I +R R +I+   +EG  
Sbjct: 244 LLTMGQPYL--ALVFANTKKTVDELTNYLEEQGLKVAKIHGGITERERKRIIRQVREGQY 301

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VASDLAARG+D+P V  V N+++P   E  IHRIGRTGR G  G A TL+  E++  
Sbjct: 302 QYVVASDLAARGIDVPGVSLVVNYEIPKDLEFVIHRIGRTGRNGLEGHAITLIYDEEMPQ 361

Query: 357 IDAIEKL 363
           I+ +EKL
Sbjct: 362 IEDLEKL 368


>gi|114149265|sp|Q3MSQ8|DDX4_RANLE RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog
 gi|76253272|emb|CAH56439.1| DEAD box protein [Rana lessonae]
          Length = 724

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 139/426 (32%), Positives = 222/426 (52%), Gaps = 21/426 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   V  +GYVK TPIQ  +IP+++   D+   AQTG+GKTA+F+LP+L
Sbjct: 286 LTFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPIL 345

Query: 61  T-ILEKGRAR-----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             ++ KG        ++ P  +I+ PTREL  Q+  +  K+     +   ++ GG     
Sbjct: 346 AHLMVKGVESSAFQTLKEPEAIIVAPTRELINQIYLDARKFSYGTCVRPVVIYGGTQMFH 405

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI--TS 172
             K++  G ++L  TPGR+LD   + K+ +  +  LV+DEADRMLDMGF   I+N+  +S
Sbjct: 406 SLKQISEGCNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADRMLDMGFREDIENLLKSS 465

Query: 173 LVPF--TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +P    RQTL+FSAT    +Q ++   L+      V      A +     V    ++ K
Sbjct: 466 GMPSKEERQTLMFSATFPSSIQSLAREILKPDYLFVVVGQVGGACSDVEQMVIEVDEFGK 525

Query: 231 KCALLQ--QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           K  L++  Q + S+ TM    +F   KK    +   L ++     +IHG+ +Q+ R   L
Sbjct: 526 KDKLMEILQEIGSERTM----VFVKTKKKADFIATFLCQEKVPSTSIHGDREQKERETAL 581

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +F+ G   ++VA+ +AARGLDI +V +V NFD+P+  + Y+HRIGRTGR G  G+A + 
Sbjct: 582 RDFRTGQCPVIVATSVAARGLDIENVSYVINFDIPDDIDEYVHRIGRTGRCGNTGRAISF 641

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
             K      D  +++    V  L+     +   LE++  + H  +   NP   K    D 
Sbjct: 642 FDKRG----DDEQRIARSLVKVLSDAHQEVPAWLEEVAFSAHGSS-AYNPRSNKFASTDD 696

Query: 409 RKKNYS 414
           RK+  S
Sbjct: 697 RKRGDS 702


>gi|146419343|ref|XP_001485634.1| hypothetical protein PGUG_01305 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 862

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 133/396 (33%), Positives = 208/396 (52%), Gaps = 25/396 (6%)

Query: 3   FADLGLSPKVVCAVLDA--GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +A LGL P  +  VL+   GY  P+PIQ + +P ++   D+ G+A TG+GKT +FV+P++
Sbjct: 268 WAQLGL-PSSIMTVLEEKLGYDTPSPIQSQALPAIMSGRDIIGVANTGSGKTLAFVIPLI 326

Query: 61  ------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   L+ G      P  +IL PTRELA Q+      + +   L+V    GG P E+
Sbjct: 327 RHIMDQPPLKSGDG----PIGVILTPTRELALQIQKELVNFTQAVELSVCCCYGGSPIES 382

Query: 115 QNKKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNIT 171
           Q   L+RG ++++ TPGR++D    N G++  +     LV+DEADRM DMGF P +  + 
Sbjct: 383 QIADLKRGTEIIVGTPGRVIDLLAANGGRVTNLRRTTFLVLDEADRMFDMGFEPQVNKVL 442

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S +   +Q +LFSAT   +L+ ++ +FL +P  I     S  A  I    V         
Sbjct: 443 SQIRPDKQMVLFSATFPKKLESLARSFLVDPIEIVAGGISVVAPEITQRVVLIDDSGDIS 502

Query: 232 CALLQQLLQ------SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
              LQ LL+       +D     +IF ++++   +L   L         IHG  DQ  R 
Sbjct: 503 QKKLQALLKIVDEFSVEDPEGKILIFVDKQEAADDLMVRLLNNQILCIVIHGGKDQVDRK 562

Query: 286 KILSNFKEGT-IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
             +  F +   +++++A+ +AARGLD+  +  V N+D P+  E+Y+HR+GRTGRAG  G 
Sbjct: 563 HAIKQFSDKNGLRVLIATSIAARGLDVRGLNLVINYDAPSHMEDYVHRVGRTGRAGATGT 622

Query: 345 AFTLVAKEDIKHI-DAIEKL-IEKKVDWLNGDLSSL 378
           A TLV     + I D +  + +  KVD +  +L S+
Sbjct: 623 AVTLVLSSQEREIRDLVRAMKMSGKVDDIPAELQSI 658


>gi|319744243|gb|EFV96608.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           agalactiae ATCC 13813]
          Length = 419

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 128/367 (34%), Positives = 194/367 (52%), Gaps = 11/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D    P +  A+ +  +V PT +Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDFNFKPYIQSALDELKFVDPTDVQAKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V++   +I  P+RELA Q+    ++  ++    V ++  +GG     Q +K
Sbjct: 61  EKLDESSDDVQV---VITAPSRELATQIYQATKQIAEHSEQEVRVVNYVGGTDKLRQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+     ++I TPGRI D    G L ++     V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LKVSQPHIVIGTPGRIYDLVKSGDLAIHKAHTFVVDEADMTLDMGFLDTVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL-LQ 236
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  ++T  +      L L 
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPLMEKIKTATVIADTIDNWLLSTKGRDKNAQILELS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L+Q    M    IF N K+    L   L   G  V  IHG I  R R +I++  K    
Sbjct: 238 KLMQPYLAM----IFVNTKERADELHSYLSSNGLKVAKIHGGIAPRERKRIMNQVKNLEF 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   
Sbjct: 294 EYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSD 353

Query: 357 IDAIEKL 363
           I  +EKL
Sbjct: 354 IRELEKL 360


>gi|71027139|ref|XP_763213.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68350166|gb|EAN30930.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 839

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 127/358 (35%), Positives = 205/358 (57%), Gaps = 11/358 (3%)

Query: 3   FADLGLSPKVVCAVLDAG--YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           F  LGL  K +C  L     Y +P+ IQ KTIP +L   DV  IA+TG+GKT +++ P++
Sbjct: 11  FGTLGLK-KPICLTLQKRLRYDQPSAIQRKTIPHILAGSDVLCIARTGSGKTVAYIAPIV 69

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN----LTVALLIGGIPFEAQN 116
            +L+     V + R LIL PTRELA QV    +K+    N    L V+LLIGG   E+Q 
Sbjct: 70  QLLDFHSPVVGV-RCLILLPTRELALQVEGVLKKFVNFSNQDDALRVSLLIGGKSVESQF 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L    D++I TPGR++ H  +  L ++ +  LVIDEAD++ +MGF+P +  + + +P 
Sbjct: 129 GSLSFNPDIVIATPGRLVYHLEQKSLTLSLLTHLVIDEADKLFEMGFLPDVYKVFAYLPK 188

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +Q +L SAT+  +L +     L  P   +++      E ++  F+  +++  +K ++L 
Sbjct: 189 IKQVILVSATLPTQLSEFVSFGLNEPVLAKLDQDQHINEQLQMSFI--FSRNEEKISVLL 246

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL     +K  I+F   + +V      L K G+S+  ++G +D  +R+  +S F+    
Sbjct: 247 RLLAKHKDLKT-IVFVATRHHVEFFRTLLLKLGYSISCVYGTMDMDNRVIEMSRFRSNKT 305

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           ++++ +D+A+RGLDIP V  V NFD P   + +IHR+GRT RAGR G A ++V  +D 
Sbjct: 306 RILLVTDVASRGLDIPLVDLVINFDFPYSTKLFIHRVGRTARAGRQGLAVSIVTNKDF 363


>gi|258513565|ref|YP_003189787.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777270|gb|ACV61164.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 383

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 124/367 (33%), Positives = 206/367 (56%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG + ++V  +       PT IQ K IPL LQ  D+ G ++TGTGKT +++LP+L  
Sbjct: 5   FEKLGTNARLVTGLQKININVPTDIQTKVIPLALQGKDIIGQSETGTGKTLAYLLPLLQK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKY--GKNYNLTVALLIGGIPFEAQNKKLE 120
           L+  +   R  + +IL PT+EL+ Q+    E    G +  +T A +IG +    Q +KL+
Sbjct: 65  LDNTK---RETQAVILAPTQELSIQIQRLIEAMISGSDIPVTSAPIIGNVNIARQVEKLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ +  RILD   + K+    I+ +VIDEADR+LD   +  I+ +       RQ 
Sbjct: 122 EKPHIIVGSCSRILDLVEKKKIAAQKIKTIVIDEADRLLDDKNLAQIKALIKTTLKDRQI 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  +  + ++  LQNP+ I +         I H +  T  +Y  K  +L++L+ 
Sbjct: 182 LLFSATIPGKTLERAKEMLQNPQIITIQANLEITPNISHIYFLT--EYRDKIKVLRKLVG 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + ++  ++F N+  N+      L   G     +H  + +  R K + +F++  IQL+V
Sbjct: 240 IIN-VERALVFVNRGDNIELTSEKLNYHGLKTAGLHAGLLKEERKKAIEDFRQNKIQLLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + +VFN D+P   + Y+HR+GRTGRAG+ G A ++VA+++   I+  
Sbjct: 299 ATDIAARGLDIAGLSYVFNLDMPEDPQAYLHRVGRTGRAGKTGTAISIVARQEAALINKY 358

Query: 361 EKLIEKK 367
           EK+++ K
Sbjct: 359 EKVLKIK 365


>gi|313221011|emb|CBY31843.1| unnamed protein product [Oikopleura dioica]
          Length = 497

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 207/379 (54%), Gaps = 22/379 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D+ L P+++  +    Y KPTPIQ   + ++    D+   AQTG+GKTA+ ++P++  
Sbjct: 67  FSDMKLCPEIMENLQRMKYTKPTPIQQYAVSILGSGSDLMATAQTGSGKTAAMMIPIINY 126

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQ 115
           L       +G    +    +++ PTRELA Q+ D   K+ G+N N+   L  GG     Q
Sbjct: 127 LRMSNIGSRGYNACQKVDCIVVAPTRELATQLYDECYKFCGRNTNVVPGLCYGGTGTREQ 186

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           ++++  G +++I TPGR+ D   +G +  +  + LV+DEADRMLD GF P I+ I + +P
Sbjct: 187 SQRIREGCNIVIGTPGRLKDFLEKGVIDASEAQFLVLDEADRMLDQGFGPDIREINAYLP 246

Query: 176 ----FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP----SSTAETIEHCFVATYAQ 227
                 R T LFSAT    +Q  ++++L+ P  I V       ++TA T +   +    +
Sbjct: 247 PKDTGKRTTALFSATFETAIQSAAQDYLR-PNYIFVAIGIIGGANTAVTQQFEQLQKREK 305

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
           +++   + +Q     +  K  +IF   K    +L   L   G     IHG+  QR R + 
Sbjct: 306 FNRTVEICKQ-----NQGKRTLIFVATKIFADSLGSMLVGDGIKATTIHGDRQQRDREQA 360

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           +++ K   + ++VA+D+AARG+DI DV  V NFD P   E+YIHRIGRT R G+ G A T
Sbjct: 361 INDLKANRMHVLVATDVAARGIDIDDVEVVINFDFPKELESYIHRIGRTARKGKKGLAIT 420

Query: 348 LV-AKEDIKHIDAIEKLIE 365
            + A +D +H  ++ K+ +
Sbjct: 421 FIDAMKDRQHASSLVKICQ 439


>gi|183229616|ref|XP_657423.2| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|169803121|gb|EAL52039.2| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 499

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 205/364 (56%), Gaps = 23/364 (6%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
            + + G+ KPT +Q   IP  L R DV   +QTG+GKT SF++P+  I+++ R  +    
Sbjct: 19  TIKEFGFSKPTEVQKVVIPAFLDRKDVIVQSQTGSGKTLSFLIPLFEIIKRERESIEKKE 78

Query: 75  T--LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
              +I+ PTRELA Q+ D  + + K++N+T+ LL GGI      +++++GA++++ T GR
Sbjct: 79  VYGIIISPTRELAHQIYDIAKIFCKHFNMTIGLLTGGIDISTLEEEMKKGANIVVGTAGR 138

Query: 133 ILDHF--NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190
           I +       +L  NN+E+L++DE DRM++MGF   +  I   +P  R+T LFSATM  E
Sbjct: 139 IEEVIVNKLFELEWNNVEVLILDEGDRMIEMGFSQSMTRIICHLPKQRRTGLFSATMPKE 198

Query: 191 LQKVSENFLQNPKRIEVN-----TPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           L K      +NP +I+++     TP S A   E+C V    +      L++ L +S+D  
Sbjct: 199 LNKFVIAGCRNPYKIQISNDNTLTPISLAN--EYCIVPYEIKMQ---TLIRVLKESKD-- 251

Query: 246 KNGIIF---CNQKKNVVNLCHSLEKQGF----SVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           K  ++F   C+Q   + N+   L ++G+     + +IHG + Q +R K++  F+E    +
Sbjct: 252 KKIVVFVLTCDQVDYIYNIIKILHQEGYLKEKEIYSIHGKVKQVNRDKVIKKFEESCEAI 311

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +D+ ARG+D  ++ ++  +D P   + YIHR+GRT R G  G +   +   +   I 
Sbjct: 312 LICTDVLARGMDFDNINYIIQYDPPQDPKTYIHRVGRTARMGSIGHSLIFLGPLEKSFIL 371

Query: 359 AIEK 362
            +EK
Sbjct: 372 LMEK 375


>gi|312384402|gb|EFR29139.1| hypothetical protein AND_02178 [Anopheles darlingi]
          Length = 819

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 116/337 (34%), Positives = 191/337 (56%), Gaps = 9/337 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+GL  +++  +   G+ KP+ IQ + I   +   DV   AQ+GTGKTA+F + +L 
Sbjct: 188 NFDDMGLREELLRGIYAYGFEKPSAIQQRAITPCIAGRDVIAQAQSGTGKTATFSIAILQ 247

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     +   + LIL PTRELA+Q+       G          IGG       ++LE+
Sbjct: 248 LIDTS---LNECQALILAPTRELASQIQKVVISLGDFLKAQCHACIGGTNVRDDMRRLEQ 304

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D  +R  L  +NI++ V+DEAD ML  GF   IQ++   +P   Q +
Sbjct: 305 GCHIVVGTPGRVHDMISRNVLRTSNIKLFVLDEADEMLSRGFKDQIQDVFRKLPSDVQVI 364

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS++F+++P +I V     T E I+  +V    +  K    L  L   
Sbjct: 365 LLSATMPADVLEVSQHFMRDPVKILVKKEELTLEGIKQFYVDVKFEDWK----LGTLCDL 420

Query: 242 QDTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            DT+     +IFCN ++ V  L   + ++ F+V A+HG+++QR R  I+  F+ G+ +++
Sbjct: 421 YDTLSITQAVIFCNTRRKVDQLTEEMTEKTFTVSAMHGDMEQRDRDLIMKQFRTGSSRVL 480

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           + +DL ARG+D+  V  V N+D+P   ENYIHRI ++
Sbjct: 481 ITTDLLARGIDVQQVSLVINYDLPTLRENYIHRIHKS 517


>gi|168068661|ref|XP_001786160.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662029|gb|EDQ49028.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 377

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 105/299 (35%), Positives = 166/299 (55%), Gaps = 7/299 (2%)

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
           P  L+L PTRELA Q+    + + ++      ++++GG     Q  +L  G ++++ TPG
Sbjct: 4   PLALVLAPTRELAQQIEKEVKAFSRSAEGFKTSIVVGGTNIYEQRSELRAGVEIVVATPG 63

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R +DH  +G   ++ +  +V+DEADRMLDMGF P I+ +   +P   QTLLFSATM +E+
Sbjct: 64  RFIDHLQQGNSSLSRVSYVVLDEADRMLDMGFEPQIREVMRSLPKKHQTLLFSATMPEEI 123

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALL----QQLLQSQDTM 245
           + +++ +L  P R++V   SS    +      +    +     ALL     Q L S    
Sbjct: 124 EALAQEYLNKPVRVKVGRVSSPTANVTQNLEKITEKEKIDSLLALLVDEHSQSLDSNQPP 183

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F  +K     +  +L +QG    A+HG   Q  R   L +F++GT  ++VA+D+A
Sbjct: 184 PLTIVFVERKARCDEVTDALVEQGLKATALHGGRSQSEREAALRDFRKGTTNILVATDVA 243

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           +RGLD+  V HV N D+P   E+Y+HRIGRTGRAG  G+A +   + D+  +  I + I
Sbjct: 244 SRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGASGRATSFYTERDVFLVAQIRRAI 302


>gi|164659598|ref|XP_001730923.1| hypothetical protein MGL_1922 [Malassezia globosa CBS 7966]
 gi|159104821|gb|EDP43709.1| hypothetical protein MGL_1922 [Malassezia globosa CBS 7966]
          Length = 552

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 128/371 (34%), Positives = 197/371 (53%), Gaps = 22/371 (5%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKG 66
           ++PK+   +   G+ KPT IQ    P++LQ  D+ G+A+TG+GKT +F +P L  ++E+ 
Sbjct: 127 INPKLKERLDMEGFSKPTLIQSCCWPVLLQGRDMVGVAETGSGKTLAFGIPALQYVMEQW 186

Query: 67  ------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                                L++ PTRELA Q  DN  +  +     V  L GG+    
Sbjct: 187 PPSSTSSIKKSKSNNKNKIHVLVIAPTRELAIQTRDNLARVAEPLGYGVFCLYGGVSKGE 246

Query: 115 QNKKLERGA---DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           Q ++L   A    +++ TPGR+LD      L + ++  L +DEADRMLD GF P I+ I 
Sbjct: 247 QIRELASYALPVHIIVGTPGRVLDLAREESLDLGHVSYLTLDEADRMLDKGFEPDIRAII 306

Query: 172 SLVPFT---RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQ 227
            +       R+T +FSAT    ++ +++ F++ P R+ V +   +A   +          
Sbjct: 307 GMTKTNEDGRRTNMFSATWPPAVRGLADTFMRVPVRVTVGSDVLSANRRVSQTVQVLDDG 366

Query: 228 YSKKCAL--LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            +K+ AL    + +Q+Q T +  +IF   KK    + ++L + G+ V  IHG++ Q  R+
Sbjct: 367 RAKERALNTFLRTIQAQKTNEKILIFALYKKEAQRVENTLRRWGYRVSGIHGDLSQHDRL 426

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L  FK     L+VA+D+AARGLDIP+V +V N+  P   E+YIHRIGRTGR G+ GKA
Sbjct: 427 ASLEAFKTAETPLLVATDVAARGLDIPNVEYVINYTFPLTIEDYIHRIGRTGRGGKSGKA 486

Query: 346 FTLVAKEDIKH 356
            T    ED  H
Sbjct: 487 ITFFTDEDKAH 497


>gi|153007483|ref|YP_001368698.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151559371|gb|ABS12869.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 644

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 117/345 (33%), Positives = 189/345 (54%), Gaps = 6/345 (1%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           ++P +  A+   GY   T +Q   +       D+   AQTG+GKT +F L M   + +G 
Sbjct: 7   IAPALSGALAARGYNTLTAVQNAVLAPETLDADLLVSAQTGSGKTVAFGLAMANTILEGE 66

Query: 68  ARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
            R      P  +I+ PTRELA QV    E    +    +A  +GG+    + + LERGA 
Sbjct: 67  LRFSDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALERGAH 126

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGR+ DH  R  L M+ +  +V+DEAD MLDMGF   ++ I    P  R+TL+FS
Sbjct: 127 IVVGTPGRLRDHITRDALDMSELRAVVLDEADEMLDMGFREDLEFILGEAPKDRRTLMFS 186

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT+   + ++++ F  +  R+ V + +S    I++  +     + +  A++  LL     
Sbjct: 187 ATVPKPIAQLAKRFQNDALRLTVQSETSQHADIDYVAMPV-PPHERDHAIINTLLYYDS- 244

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +N IIFC+ ++ V ++   L  +GF+V A+ G + Q  R   L   ++G  ++ VA+D+
Sbjct: 245 -QNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVATDV 303

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           AARG+D+P++  V + D+PN  E  +HR GRTGRAGR G    +V
Sbjct: 304 AARGIDLPNLDLVIHADLPNNPETMLHRSGRTGRAGRKGTCVLVV 348


>gi|170099199|ref|XP_001880818.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644343|gb|EDR08593.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 449

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 130/401 (32%), Positives = 212/401 (52%), Gaps = 31/401 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCG--------IAQTGTGKTAS 54
           FA+LG+   ++ A+ +  +  PT IQ   IP  +   DV G        IA TG+GKT +
Sbjct: 6   FAELGICAPLLQALEELKHTTPTEIQTGCIPQAIAGRDVIGSVWKLVIGIAPTGSGKTLA 65

Query: 55  FVLPMLTILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
           F +P+L  L         P+     +L PTRELA Q++  FE  G    +   +++GG  
Sbjct: 66  FAIPILHRLWDN------PQGYFACVLSPTRELAYQISAQFEALGAAMGVRSVVIVGGDD 119

Query: 112 FEAQNK-KLERGADVLICTPGRILDHFN-RGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
              Q   +L +   +++ TPGR+ DH N      + ++ + V+DEADR+LD+ F   I  
Sbjct: 120 DRVQQAVQLAQKPHIIVATPGRLHDHLNFHTTQPIIHLGLQVLDEADRLLDLDFQREITE 179

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I   +P  R T LFSATMT  + K+    L +P R++       A    +  V+T  Q+ 
Sbjct: 180 IMQSIPKERCTYLFSATMTANVSKLQRASLSDPVRVD-------ASLFRYTTVSTLLQHY 232

Query: 230 KKCALLQQ---LLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
             C L+++   L+   +++     I+F     +   L   L   GF    +HG + Q  R
Sbjct: 233 LLCPLVEKEVTLVYLINSLAQNLIIVFVRTVADAKCLSIILRSLGFEAVPLHGELTQSQR 292

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
           + + + FK G  +++VA+D+A+RGLD+P+V  V N+DVP  +++YIHR+GRT RAGR GK
Sbjct: 293 LGVFTRFKSGKSRILVATDVASRGLDVPNVDVVINYDVPTHSKDYIHRVGRTARAGRAGK 352

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
           +  +V + D + +  +EK++ +K+D    DL  +    E++
Sbjct: 353 SILMVTQYDAELMLRLEKVLNRKLDLYPTDLQEIALLKERV 393


>gi|19387219|gb|AAL87140.1|AF479821_1 DEAD box RNA helicase Vasa [Hyphessobrycon ecuadoriensis]
          Length = 397

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 136/386 (35%), Positives = 211/386 (54%), Gaps = 31/386 (8%)

Query: 45  AQTGTGKTASFVLPMLT-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKN 98
           AQTG+GKTA+F+LP+L  ++  G A      V+ P  +I+ PTREL  Q+     K+   
Sbjct: 4   AQTGSGKTAAFLLPILQQLMTDGVAASKFSEVQEPEAIIVAPTRELINQIYLEARKFAYG 63

Query: 99  YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             +   ++ GGI      +++ +G +VL  TPGR+LD   RGK+ ++ +  LV+DEADRM
Sbjct: 64  TCVRPVVVYGGINTGYTIREVLKGCNVLCGTPGRMLDIIGRGKVGLSKLRYLVLDEADRM 123

Query: 159 LDMGFIPYIQNITSL--VPF--TRQTLLFSATMTDELQKVSENFLQNPKR-IEVNTPSST 213
           LDMGF   ++ + S   +P    RQTL+FSAT  + +Q+++ +FL+     + V      
Sbjct: 124 LDMGFEQDMRKLVSSPGMPAKEERQTLMFSATYPEXIQRLAADFLKXDYLFLAVGXVGGA 183

Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
              +E   +    QYSK+  LL+ LL++  T +  ++F   K++   +   L ++     
Sbjct: 184 CSDVEQQIIQV-DQYSKREQLLE-LLKTTGTERT-MVFVETKRSADFIATFLCQEKVPTT 240

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
           +IHG+ +QR R K LS+F+ G   ++VA+ +AARGLDI  V HV NFD+PN  E Y+HRI
Sbjct: 241 SIHGDREQREREKALSDFRTGQCPVLVATSVAARGLDIEHVQHVVNFDLPNNIEEYVHRI 300

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           GRTGR G  G+A +        + ++   L    V  L G    + P LE+I  + H   
Sbjct: 301 GRTGRCGNTGRAVSFF------YAESDTPLARSLVKVLTGAQQEVPPWLEEIAFSAHG-- 352

Query: 394 RKNNPIPQKSTGFDRRKKNYSSQKSH 419
                    +TGF+ R K ++S  S 
Sbjct: 353 ---------TTGFNPRGKVFASTDSR 369


>gi|299746292|ref|XP_001837876.2| ATP-dependent RNA helicase dbp-4 [Coprinopsis cinerea okayama7#130]
 gi|298406988|gb|EAU83976.2| ATP-dependent RNA helicase dbp-4 [Coprinopsis cinerea okayama7#130]
          Length = 816

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 126/358 (35%), Positives = 201/358 (56%), Gaps = 18/358 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +S +    +  A +VK T IQ K+IPL L+  DV G A+TG+GKT +F++P+L +
Sbjct: 55  FADLPISEQTKRGLKKASFVKMTDIQAKSIPLSLKGKDVLGAARTGSGKTLAFLIPVLEV 114

Query: 63  LEKGRARVRMPR----TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L +   R   P      LI+ PTRELA Q+ +     G  ++ +  L+IGG   + +  +
Sbjct: 115 LYR---RKWGPTDGLGALIISPTRELAVQIFEVLRAIGPFHSFSAGLVIGGKNLKDERDR 171

Query: 119 LERGADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L R  ++L+ TPGR+L H ++      +N+++LV+DEADR+LDMGF   +  + S +P +
Sbjct: 172 LSR-MNILVATPGRLLQHMDQTVGFDTDNLQMLVLDEADRILDMGFQRTLSALLSHLPKS 230

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA----ETIEHCFVATYAQYSKKCA 233
           RQTLLFSAT T+ +  ++   L++P+ + V    S+     +++E  +V T  +  KK  
Sbjct: 231 RQTLLFSATQTESVSDLARLSLKDPEYVGVKEAGSSGSYIPDSLEQHYVIT--ELDKKLD 288

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ--GFSVCAIHGNIDQRSRMKILSNF 291
           +L   +++    K  ++F +  K V  +  +  K   G  +  +HG   Q +R+ + + F
Sbjct: 289 VLWSFIKTHLQSKV-LVFLSSCKQVRFVFETFCKMHPGVPLLHLHGKQKQTARLAMYTKF 347

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
              +  +M A+D+AARGLD P V  V   D P  AE YIHR+GRT R    GK    +
Sbjct: 348 TSHSHAVMFATDIAARGLDFPAVDWVVQVDAPEDAETYIHRVGRTARYESKGKGLLFL 405


>gi|228477005|ref|ZP_04061643.1| ATP-dependent RNA helicase [Streptococcus salivarius SK126]
 gi|228251024|gb|EEK10195.1| ATP-dependent RNA helicase [Streptococcus salivarius SK126]
          Length = 447

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 125/366 (34%), Positives = 199/366 (54%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ +  + +PTP+Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDFNFKTFIQEALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L      V++   +I  P+RELA Q+    ++  K+ +  + ++  +GG   + Q +K
Sbjct: 61  EKLNPKSGDVQV---VITAPSRELATQIYQATKQIAKHSDTEIRVVNYVGGTDKQRQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+     ++I TPGRI D    G L ++     V+DEAD  +DMGF+  +  I + +P  
Sbjct: 118 LKVAQPHIVIGTPGRIYDLVKSGDLAIHKAHTFVVDEADMTMDMGFLDTVDKIAASLPKE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  V+T  + +K   +L+ 
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEQIKTSTVIADTIDNWLVSTKGR-NKNEQILEM 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   Q  +   +IF N K+   +L   L   G  V  IHG I  R R +I++  K+   +
Sbjct: 237 LKGMQPYL--AMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 RELEKM 360


>gi|307317997|ref|ZP_07597434.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
 gi|306896399|gb|EFN27148.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
          Length = 630

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 195/346 (56%), Gaps = 6/346 (1%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEK 65
           G++P +  A+   GY   TP+Q   +   L   D    AQTG+GKT +F L +  T++  
Sbjct: 6   GIAPAIAEALAKRGYETLTPVQQAMLDPSLGTADALVSAQTGSGKTVAFGLALAPTLIGS 65

Query: 66  GR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            R  A+   P  L++ PTRELA QV    +   +    T+A  +GG+   ++ + LERGA
Sbjct: 66  ARKFAQAGAPLALVIAPTRELALQVMRELDWLYEMAGATIASCVGGMDMRSERRTLERGA 125

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            +++ TPGR+ DH  RG L ++ ++ +V+DEAD MLD+GF   ++ I    P  R+TL+F
Sbjct: 126 HIVVGTPGRLCDHIRRGSLDISGLKAVVLDEADEMLDLGFREDLEFILEASPADRRTLMF 185

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT+   +  +++N+ ++  RI V +       IE+  +   A   ++ A++  L   + 
Sbjct: 186 SATVPRSIATLAKNYQRDAVRIGVTSEQKQHGDIEYRSL-LVAPSDRENAIINVLRFYE- 243

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +N I+FC+ +  V +L      +GFSV A+ G + Q  R   L   ++G  ++ +A+D
Sbjct: 244 -ARNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQNERTHALQAMRDGRARVCIATD 302

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +AARG+D+P +  V + D+P  ++  +HR GRTGRAG+ G +  +V
Sbjct: 303 VAARGIDLPGLELVIHADLPTNSDTLLHRSGRTGRAGQKGVSALIV 348


>gi|312963542|ref|ZP_07778024.1| ATP-independent RNA helicase DbpA [Pseudomonas fluorescens WH6]
 gi|311282348|gb|EFQ60947.1| ATP-independent RNA helicase DbpA [Pseudomonas fluorescens WH6]
          Length = 423

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 120/338 (35%), Positives = 193/338 (57%), Gaps = 8/338 (2%)

Query: 34  LVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFE 93
           ++L+  D+   A+TG+GKTA+F + +L  +     R    + L++ PTRELA QVA    
Sbjct: 1   MILKGLDLIAQAKTGSGKTAAFGIGLLNPINP---RYFGCQALVMCPTRELADQVAKEIR 57

Query: 94  KYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVI 152
           +  +   N+ V  L GG+    Q   LE GA V++ TPGRI  H  +G L+++ +  L++
Sbjct: 58  RLARAEDNIKVLTLCGGVSLGPQIASLEHGAHVIVGTPGRIQQHLRKGSLVLDGLNTLIL 117

Query: 153 DEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS 212
           DEADRMLDMGF   I++I S  P  RQTLLFSAT    +++++  F++ P++++     S
Sbjct: 118 DEADRMLDMGFYDAIEDIISKTPPRRQTLLFSATYPVSIKQLASKFMRAPQQVKAEAFHS 177

Query: 213 TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             + IE  F     +  +  A+ + L   +    + + FC  K+ V      L  +G   
Sbjct: 178 D-DQIEQRFYEISPE-ERMDAVTKVLAHFRPA--SCVAFCFTKQQVQETVDHLTAKGICA 233

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
             +HG+++QR R ++L+ F   +  ++VA+D+AARGLDI  +  V N ++   +E +IHR
Sbjct: 234 VGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDIDALDMVINVELARDSEIHIHR 293

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           +GRTGRAG  G A +LVA  +     AIE+L +  ++W
Sbjct: 294 VGRTGRAGETGIAISLVAPSEAHRAQAIEQLQKSPLNW 331


>gi|163738737|ref|ZP_02146151.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           BS107]
 gi|161388065|gb|EDQ12420.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           BS107]
          Length = 713

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 120/334 (35%), Positives = 185/334 (55%), Gaps = 8/334 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA----RVRMPRT 75
           GY   TP+Q       L + D+   AQTG+GKT  F L M   L  G A    R  +P  
Sbjct: 27  GYEHLTPVQEAVTAAELDQSDLLVSAQTGSGKTVGFGLAMAPTL-LGDAEKLDRADLPLA 85

Query: 76  LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           L++ PTRELA QV              V   +GG+    + + LERGA +++ TPGR+ D
Sbjct: 86  LVIAPTRELALQVKRELGWLYAEAGAHVVSTVGGMDMRDERRALERGAHIVVATPGRLRD 145

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
           H  RG + ++ +  +V+DEAD MLD+GF   ++ I    P  R+TL+FSAT+   + +++
Sbjct: 146 HIMRGSINLSQVRAVVLDEADEMLDLGFREDLEFILGESPEDRRTLMFSATVPTGIARLA 205

Query: 196 ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
           E +L++ +RI+    +S    IE+  +A  AQ   + A++  L   +    N I+FCN +
Sbjct: 206 ETYLKDHQRIKTVAEASQHADIEYQMLAV-AQRDVENAVINVLRFHESP--NAIVFCNTR 262

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
             V  +   L  +GFSV A+ G + Q  R   L + ++G  ++ VA+D+AARG+D+P + 
Sbjct: 263 AVVNRMTTRLSNRGFSVVALSGELSQAERSNALQSLRDGRARVCVATDVAARGIDLPKLD 322

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            V + D+P+  E  +HR GRTGRAGR G +  +V
Sbjct: 323 LVIHADLPSSHETLLHRSGRTGRAGRQGVSALIV 356


>gi|45382659|ref|NP_990039.1| probable ATP-dependent RNA helicase DDX4 [Gallus gallus]
 gi|9967268|dbj|BAB12337.1| Cvh [Gallus gallus]
          Length = 662

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 123/349 (35%), Positives = 199/349 (57%), Gaps = 15/349 (4%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR----- 74
           GY K TP+Q  +IP++    D+   AQTG+GKTA+F+LP++  + K       P+     
Sbjct: 255 GYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVTASFPKQQDPQ 314

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  TPGR+L
Sbjct: 315 CIIVAPTRELINQIFLEARKFVYGTCIRPVVIYGGTQTGHSIRQIMQGCNILCATPGRLL 374

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----RQTLLFSATMTDE 190
           D   +GK+ +  ++ LV+DEADRMLDMGF   ++ + S         RQTL+FSAT  +E
Sbjct: 375 DIIEKGKISLVEVKYLVLDEADRMLDMGFGLDMKKLISYPEMPSKDRRQTLMFSATFPEE 434

Query: 191 LQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
           +Q+++  FL+      V  NT  + ++  ++  +    + SK+  L++ +LQS    +  
Sbjct: 435 VQRLAGEFLKTDYIFLVIGNTCGACSDVQQN--ILQVPRLSKRDKLIE-ILQSTGGERT- 490

Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           ++F + KK    L   L ++     +IHG+ +QR R   L +F+ G  Q++VA+ +A+RG
Sbjct: 491 MVFVDTKKKADYLAAFLCQENLPSTSIHGDREQREREIALRDFRSGKCQILVATSVASRG 550

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           LDI +V HV NFD+PN  E+Y+HRIGRTGR G  GKA +    +   H+
Sbjct: 551 LDIENVQHVINFDLPNTIEDYVHRIGRTGRCGNTGKAVSFFDDQSDGHL 599


>gi|2500517|sp|Q40471|IF4A9_TOBAC RecName: Full=Eukaryotic initiation factor 4A-9; Short=eIF-4A-9;
           AltName: Full=ATP-dependent RNA helicase eIF4A-9
 gi|485951|emb|CAA55736.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 124/379 (32%), Positives = 198/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDAMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     +   + L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 102 LD---YELLDCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G +   V  +D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTSDDERMLSD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     ++ L  +++ L
Sbjct: 394 IQRFYNVVIEELPANVADL 412


>gi|163741552|ref|ZP_02148943.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           2.10]
 gi|161385286|gb|EDQ09664.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           2.10]
          Length = 718

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 120/334 (35%), Positives = 185/334 (55%), Gaps = 8/334 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA----RVRMPRT 75
           GY   TP+Q       L + D+   AQTG+GKT  F L M   L  G A    R  +P  
Sbjct: 27  GYEHLTPVQEAVTAAELDQSDLLVSAQTGSGKTVGFGLAMAPTL-LGDAEKLDRADLPLA 85

Query: 76  LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           L++ PTRELA QV              V   +GG+    + + LERGA +++ TPGR+ D
Sbjct: 86  LVIAPTRELALQVKRELGWLYAEAGAHVVSTVGGMDMRDERRALERGAHIVVATPGRLRD 145

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
           H  RG + ++ +  +V+DEAD MLD+GF   ++ I    P  R+TL+FSAT+   + +++
Sbjct: 146 HIMRGSINLSQVRAVVLDEADEMLDLGFREDLEFILGESPEDRRTLMFSATVPTGIARLA 205

Query: 196 ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
           E +L++ +RI+    +S    IE+  +A  AQ   + A++  L   +    N I+FCN +
Sbjct: 206 ETYLKDHQRIKTVAEASQHADIEYQMLAV-AQRDVENAVINVLRFHESP--NAIVFCNTR 262

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
             V  +   L  +GFSV A+ G + Q  R   L + ++G  ++ VA+D+AARG+D+P + 
Sbjct: 263 AVVNRMTTRLSNRGFSVVALSGELSQAERSNALQSLRDGRARVCVATDVAARGIDLPKLD 322

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            V + D+P+  E  +HR GRTGRAGR G +  +V
Sbjct: 323 LVIHADLPSSHETLLHRSGRTGRAGRQGVSALIV 356


>gi|195332686|ref|XP_002033028.1| GM21090 [Drosophila sechellia]
 gi|194124998|gb|EDW47041.1| GM21090 [Drosophila sechellia]
          Length = 522

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 147/442 (33%), Positives = 229/442 (51%), Gaps = 16/442 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +V  +   G    TPIQ K IP +L   D  G A+TG+GKT +F LP   I
Sbjct: 9   FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALP---I 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+          L+L PT ELA Q+++ F   G+   + V ++ GG     +++KL + 
Sbjct: 66  LERLSEEPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQR 125

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++  PGR+ DH         +N++ LV+DEADRML+  F   +  I   +P TRQ L
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKTRQNL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQLL 239
            FSATM D   K S  F       E +  S  +T ET++  ++   A Y +   L++ L 
Sbjct: 186 FFSATMKD-FMKESSIFPIASDCFEWSQDSDVATVETLDQRYLLC-ADYDRDMVLIEALR 243

Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + ++  +N   +IF N KK    L  +L+        +HG + Q+ R+  LS FK   I+
Sbjct: 244 KYREGNENANVMIFTNTKKYCQLLSMTLKNMDIDNVCLHGFMRQKERVAALSRFKSNQIR 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKH 356
            ++A+D+AARGLDIP V  V N  +P   + YIHR+GRT RAGR G + ++     D++ 
Sbjct: 304 TLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLEL 363

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           + AIE+ I  K+     D       +E+I   Q N  R+ + +   +  FD R +NY  +
Sbjct: 364 LAAIEEEINTKLTEHPID----QRMVERI-FMQVNVTRRESEMQLDNNDFDERAQNYRRK 418

Query: 417 KSHIPLKESEKISKLQQDIQEN 438
              +  K+ +++  L +  Q++
Sbjct: 419 TWIMEGKDPDQMEALYRKKQKD 440


>gi|121704610|ref|XP_001270568.1| ATP dependent RNA helicase (Dhh1), putative [Aspergillus clavatus
           NRRL 1]
 gi|142981101|sp|A1CJ18|DHH1_ASPCL RecName: Full=ATP-dependent RNA helicase dhh1
 gi|119398714|gb|EAW09142.1| ATP dependent RNA helicase (Dhh1), putative [Aspergillus clavatus
           NRRL 1]
          Length = 503

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 191/362 (52%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E+   +    + LIL PTRELA Q +   +  GK+  + V +  GG        +L 
Sbjct: 107 ---ERINPKSTKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRLN 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 164 DAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  ++NP  I +     T   I   +   + +  +K   L  L  
Sbjct: 224 MLFSATFPLIVKSFKDKHMRNPYEINL-MDELTLRGITQYYA--FVEEKQKVHCLNTLF- 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q+ R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYKI 399

Query: 361 EK 362
           E+
Sbjct: 400 EQ 401


>gi|239942861|ref|ZP_04694798.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
           15998]
          Length = 457

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 119/347 (34%), Positives = 181/347 (52%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L +   +  A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 85  FGELEMPAPLKQALATEGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 144

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  + P  L+L PTRELA QV D    Y ++  L +A ++GG+    Q   L  G
Sbjct: 145 TAGRRADAKRPLALVLVPTRELAQQVTDALTPYARSLKLRLATVVGGMSIGRQASALRGG 204

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D   R    ++ + + V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 205 AEVVVATPGRLKDLIERRDCKLDRVTVTVLDEADQMADMGFMPQVTELLDQVNPDGQRML 264

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L++P    V+  +    T+EH  +  Y Q + K A   ++    
Sbjct: 265 FSATLDRNVDLLVRTYLKDPVVHSVDPAAGAVTTMEHHVL--YVQGADKYATTTEIAARD 322

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F + K  V  L   L   G    A+HG   Q  R + L  FK G + ++VA+
Sbjct: 323 GRV---IMFLDTKHAVDKLTDHLLHSGVRAAALHGGKSQPQRTRTLDRFKTGQVTVLVAT 379

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 380 NVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLV 426


>gi|227877601|ref|ZP_03995655.1| ATP-dependent RNA helicase [Lactobacillus crispatus JV-V01]
 gi|256844556|ref|ZP_05550042.1| RNA helicase [Lactobacillus crispatus 125-2-CHN]
 gi|256849055|ref|ZP_05554488.1| RNA helicase [Lactobacillus crispatus MV-1A-US]
 gi|262047537|ref|ZP_06020492.1| RNA helicase [Lactobacillus crispatus MV-3A-US]
 gi|293381585|ref|ZP_06627572.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1]
 gi|227862795|gb|EEJ70260.1| ATP-dependent RNA helicase [Lactobacillus crispatus JV-V01]
 gi|256613634|gb|EEU18837.1| RNA helicase [Lactobacillus crispatus 125-2-CHN]
 gi|256713831|gb|EEU28819.1| RNA helicase [Lactobacillus crispatus MV-1A-US]
 gi|260572113|gb|EEX28678.1| RNA helicase [Lactobacillus crispatus MV-3A-US]
 gi|290921855|gb|EFD98870.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1]
          Length = 453

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 137/413 (33%), Positives = 217/413 (52%), Gaps = 14/413 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  + P +   +    + KPT +Q K IP +L    V   A TG+GKT ++++P+   
Sbjct: 5   FIDSRIKPAIQAGLKKIHFEKPTKVQEKVIPAMLSDLSVVVQAATGSGKTHAYLVPIFNE 64

Query: 63  LEKGRARVRMPRTLILEPTRELA---AQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +E+ +  V+   TL   P+RELA    QVA    +     + ++A L GG   E Q +K 
Sbjct: 65  IEEDKRYVQAIVTL---PSRELADQLYQVARQL-RDAAGMHFSIAHLAGGTDRERQLEKY 120

Query: 120 ERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +     ++I TPGR+LD   +    ++ ++  VIDEAD  LDMGF+  I  + + +P   
Sbjct: 121 QNNTPQLVIATPGRLLDFVQKKVFAVDQVKTFVIDEADMTLDMGFLNDIDQVAAKLPKDV 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q   FSAT+  +L      ++ +P  I ++ PS  A TI++  +   ++  +K  L + L
Sbjct: 181 QIAAFSATIPVKLSNFLRKYMAHPDEIVIDNPSVIAPTIKNDLLDIGSK-DRKNVLYKLL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q  +   ++F N K+ V  L + L+ QG  V  IHG + +R R + L   ++G  Q 
Sbjct: 240 TMGQPYL--ALVFANTKQKVDELTNYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQYQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARGLDI  V  V N+++P   E  IHRIGRTGR G  G A TL+ +E++  I+
Sbjct: 298 VVASDLAARGLDIDGVSLVVNYEIPRDIEFVIHRIGRTGRNGLSGHAITLIREEEMNRIE 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            +EK+     D++      L P   K   ++ N   KN  +  K  G+ +++K
Sbjct: 358 ELEKM-GVHFDFVEIKNGELVP--RKHYRSRENRQSKNRKLDTKLVGYVKKEK 407


>gi|329937165|ref|ZP_08286764.1| ATP-dependent RNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329303446|gb|EGG47332.1| ATP-dependent RNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 506

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 120/350 (34%), Positives = 184/350 (52%), Gaps = 11/350 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L  +++  +   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 70  FEELDLPARLLTTLSAQGMSAPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 129

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV      Y K   L +  ++GG+    Q   L  G
Sbjct: 130 THGQRAEPRYPLALVLVPTRELAQQVTAALTPYAKALGLRLTTVVGGVSLGRQASALRGG 189

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR---Q 179
           A+V++ TPGR+ D  +R    ++++ + V+DEAD+M DMGF+P    +T+L+  TR   Q
Sbjct: 190 AEVVVATPGRLKDLIDRDDCRLDSVALTVLDEADQMTDMGFMP---QVTALLDRTRPDGQ 246

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT+   + ++   +L +P    V+  +    T+EH  +  +     K A   ++ 
Sbjct: 247 RLLFSATLDRNVDRLVRRYLHDPVVHSVDPAAGAVTTMEHHVL--HVDDEDKHATTARIA 304

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +  +   I+F + K     L   L   G    A+HG   Q  R + L+ FK+G +  +
Sbjct: 305 AREGRV---IMFLDTKHAADRLAKKLLAVGVRAAALHGGKSQSQRTRTLAQFKDGNVTAL 361

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +A+++AARG+ + D+  V N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 362 IATNVAARGIHVDDLDLVVNVDPPGDHKDYLHRGGRTARAGESGTVVTLV 411


>gi|327306565|ref|XP_003237974.1| ATP-dependent RNA helicase DHH1 [Trichophyton rubrum CBS 118892]
 gi|326460972|gb|EGD86425.1| ATP-dependent RNA helicase DHH1 [Trichophyton rubrum CBS 118892]
          Length = 508

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 121/362 (33%), Positives = 192/362 (53%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +   ++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFEDFYIKRDLMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E+   ++   + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 107 ---ERTNPKIAKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLN 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   ++     V+DEAD++L   F P I+ + +  P  RQ 
Sbjct: 164 DTVHIIVGTPGRILDLASKGVADLSECTTFVMDEADKLLSPEFTPVIEQLLTFHPKDRQV 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  ++NP  I +     T   I   +   + +  +K   L  L  
Sbjct: 224 MLFSATFPIIVKTFKDKHMRNPYEINL-MDELTLRGITQYYA--FVEERQKVHCLNTLF- 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRYNLYKI 399

Query: 361 EK 362
           E+
Sbjct: 400 EQ 401


>gi|116511271|ref|YP_808487.1| superfamily II DNA/RNA helicase [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116106925|gb|ABJ72065.1| Superfamily II DNA and RNA helicase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 446

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 127/365 (34%), Positives = 196/365 (53%), Gaps = 8/365 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +   + +  + KPT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTDFNFKDYINQTLENIKFEKPTEVQQKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
             +      V+    +I  P+RELA Q+    +++ K N  + V+  +GG     Q KKL
Sbjct: 61  QNINPELDEVQ---AVITAPSRELATQIYKAAQEFVKVNGKIRVSNFVGGTDKARQIKKL 117

Query: 120 ERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           E     ++I TPGRI D      L+++     V+DEAD  LDMGF+  +  I S      
Sbjct: 118 EAAQPHIVIGTPGRIHDLVKSNALVVHTARTFVVDEADMTLDMGFLADVDQIASSFGKRV 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+  +LQ   + +L NP   ++   +  ++TIE+  V+T    S    LL QL
Sbjct: 178 QMLVFSATIPQKLQPFLKKYLHNPVMEKIANKTVISDTIENWLVSTKG--SSHNQLLLQL 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            ++ +     +IF N K  V ++ H L   G  V  IHG++  R R +I+++ K    Q 
Sbjct: 236 TKALNPYM-AMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQY 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  V H+ N ++P     ++HR+GR+GR G  G A TL +  D   I 
Sbjct: 295 VVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLRGTAITLYSPSDDSSIR 354

Query: 359 AIEKL 363
            IEK+
Sbjct: 355 EIEKM 359


>gi|315637076|ref|ZP_07892299.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
 gi|315478612|gb|EFU69322.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
          Length = 372

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 116/308 (37%), Positives = 177/308 (57%), Gaps = 5/308 (1%)

Query: 57  LPMLTILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           +P+L  L + +    +P  RTLIL PTRELA Q+    + Y K  ++    + GG+  + 
Sbjct: 1   MPILEELIEQKQTNELPILRTLILVPTRELATQIGKVIDDYAKYLDIKRLAIFGGVSSKE 60

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q KKL  G D+L+ T GR+L+H     + ++++  +VIDE D MLDMGF+  ++ I   +
Sbjct: 61  QEKKLSNGIDILVSTSGRLLEHIKNKNVNLSSVTTVVIDEVDTMLDMGFLEDLEKILPNI 120

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQ ++FSAT+   ++K+++ FL +P  IEV    S+ + ++   V       KK  L
Sbjct: 121 GQNRQIMMFSATLNQNVKKLAKEFLSDPVVIEVAKQRSSVKIVDQQIV--LVDEDKKTEL 178

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L+ S++     ++F N KK   +L   L   G     IHG++ Q +R K L  FK G
Sbjct: 179 LSYLIGSRN-YSQVLVFVNMKKEADDLVAHLNLDGLPAECIHGDVRQTARAKALRKFKSG 237

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+++VA+D+AARG+DI  +  V NF +P    +Y HRIGRTGRAG  G A TL++ +D 
Sbjct: 238 DIRVLVATDIAARGIDIELLPVVVNFALPETITDYTHRIGRTGRAGNAGTAITLLSVKDY 297

Query: 355 KHIDAIEK 362
           K +  IEK
Sbjct: 298 KFMIEIEK 305


>gi|225680133|gb|EEH18417.1| ATP-dependent RNA helicase dbp4 [Paracoccidioides brasiliensis
           Pb03]
          Length = 816

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 131/392 (33%), Positives = 216/392 (55%), Gaps = 26/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL LS   +  +  + +   T IQ K +P  L+  D+ G A+TG+GKT +F++P+L +
Sbjct: 51  FADLPLSEASLDGLSASHFKTLTSIQAKALPHALKGRDILGAAKTGSGKTLAFLVPLLEL 110

Query: 63  L-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  K          L+L PTRELA Q+ +   K G++++ +  L+IGG   + + ++L R
Sbjct: 111 LYRKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHSFSAGLVIGGKSLQEEQERLGR 170

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++      N I++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 171 -MNILVCTPGRMLQHMDQTAAFDTNRIQLLVLDEADRIMDMGFQNTVDAIVEHLPKERQT 229

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYSKKCALLQQL 238
           +LFSAT T ++  ++   L++P+ I V+  +S+A    ++  ++ T     +K   L   
Sbjct: 230 MLFSATQTQKVSDLARLSLRDPEYISVHEAASSATPAKLQQNYIVT--PLPEKLDTLWSF 287

Query: 239 LQSQDTMKNGI-IFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++S  ++K+ I +F +  K V  +  S    + G S+  +HG   Q +R+ I   F    
Sbjct: 288 IRS--SLKSKIMVFFSSGKQVRFVYESFRHMQPGISLLHLHGRQKQGARVDITKKFSVAK 345

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
              + A+D+AARGLD P V  V   D P  A+ YIHR GRT R  R+G+A   +  E  +
Sbjct: 346 HACLFATDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFL--EPSE 403

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
               +++L +KK+            P+EKI++
Sbjct: 404 EAAMLKRLEQKKI------------PIEKINV 423


>gi|294658221|ref|XP_002770738.1| DEHA2F04466p [Debaryomyces hansenii CBS767]
 gi|218511822|sp|Q6BML1|PRP5_DEBHA RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|202952969|emb|CAR66268.1| DEHA2F04466p [Debaryomyces hansenii]
          Length = 913

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 127/370 (34%), Positives = 197/370 (53%), Gaps = 28/370 (7%)

Query: 3   FADLGLSPKVVCAVLDA--GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++ LGL P  + ++++    Y  P+ IQ + IP ++   D+ G+A+TG+GKT SFVLP+L
Sbjct: 318 WSQLGL-PSTIMSIIEGRLNYSSPSSIQAQAIPAIMSGRDIIGVAKTGSGKTLSFVLPLL 376

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   L+KG      P  LI+ PTRELA Q+      + K  N++     GG   E+
Sbjct: 377 RHIQDQPPLKKGDG----PIGLIMTPTRELALQIHKELNHFTKKLNISSCCCFGGSSIES 432

Query: 115 QNKKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNIT 171
           Q  +L++GA +++ TPGRI+D    N G++  +  +  LV+DEADRM DMGF P +  + 
Sbjct: 433 QIAELKKGAQIIVGTPGRIIDLLAANSGRVTNLQRVTYLVLDEADRMFDMGFEPQVTKVF 492

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI---------EHCFV 222
           + V   RQT+LFSAT   +++ +++  L NP  I V   S  A  I         E    
Sbjct: 493 TRVRPDRQTVLFSATFPRKMELLAKKILDNPMEIVVGGISVVASEITQKVELFENEDDKS 552

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
              A++SK  + L      +D     +IF  ++     L   L  + +   AIHG  DQ 
Sbjct: 553 LEEAKFSKLLSTLNDY-GDKDAECKILIFVEKQIAADELLVKLLTEKYPCLAIHGGKDQI 611

Query: 283 SRMKILSNFKEGT--IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
            R   +  F      + +++A+ +AARGLD+  +  V N++  +  E+Y+HR+GRTGRAG
Sbjct: 612 DRKHAIREFSSSNSGVNILIATSIAARGLDVKGLNLVINYEAASHMEDYVHRVGRTGRAG 671

Query: 341 RHGKAFTLVA 350
           R G A T V+
Sbjct: 672 RKGTAITFVS 681


>gi|42518569|ref|NP_964499.1| RNA helicase [Lactobacillus johnsonii NCC 533]
 gi|41582854|gb|AAS08465.1| probable RNA helicase [Lactobacillus johnsonii NCC 533]
          Length = 461

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 124/365 (33%), Positives = 201/365 (55%), Gaps = 11/365 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  + P++   +    + KPT +Q   IP  L + +V   A TG+GKT ++++P+L +
Sbjct: 8   FQNEKIRPELQAGLEKINFKKPTKVQSSVIPAFLNKKNVVVQAATGSGKTHAYLIPILNM 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQ---VADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +++      + + ++  P+RELA Q   VA    +     N+++  L GG     Q +K 
Sbjct: 68  IDESAP---VTQAIVTAPSRELANQLYKVARQL-RDASGLNISIEYLGGGNDRNRQIEKA 123

Query: 120 E-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           E R   ++I TPGR+ D  ++  + + N++  +IDEAD  LDMGF+  +  I S +    
Sbjct: 124 ESRAPQLIIATPGRLHDFASKKFINLENVKAFIIDEADMTLDMGFLGQMDEIMSKLDKKA 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
               FSAT+  +L+     ++  P+ I ++ P+  A TI++  +   ++  KK  L + L
Sbjct: 184 VLGAFSATIPVKLENFLRKYMSKPEFIVIDNPAIIAPTIQNDLIDVGSR-DKKSILYKLL 242

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q  +   ++F N KK V  L   LE+QG  V  IHG I +R R +I+   +EG  Q 
Sbjct: 243 TMGQPYL--ALVFANTKKTVDELTDYLEEQGLKVAKIHGGITERERKRIIRQVREGQYQY 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARG+D+P V  V N+++P   E  IHRIGRTGR G  G A TL+  +++  I+
Sbjct: 301 VVASDLAARGIDVPGVSLVVNYEIPKDLEFVIHRIGRTGRNGLEGHAITLIYDDEMSQIE 360

Query: 359 AIEKL 363
            +EKL
Sbjct: 361 DLEKL 365


>gi|212275171|ref|NP_001130422.1| hypothetical protein LOC100191518 [Zea mays]
 gi|194689078|gb|ACF78623.1| unknown [Zea mays]
 gi|224029523|gb|ACN33837.1| unknown [Zea mays]
          Length = 613

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 130/382 (34%), Positives = 196/382 (51%), Gaps = 21/382 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL  +V+ A+ + G  KPT IQ   +P VL    V   + TG+GKT +++LP++ +
Sbjct: 97  FEELGLGEEVMSALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQL 156

Query: 63  LEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           L +  A      + R PR ++L PTREL  QV    +    +      ++ GG     Q 
Sbjct: 157 LRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVYRVAKSISHHARFRSTMVSGGTRLRPQE 216

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L    D+++ TPGRILDH   G ++  +I+ LV+DEAD M D GF P I+    L P 
Sbjct: 217 DSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKF--LAPL 274

Query: 177 TR----------QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                       QT+L +ATMT  +QK+ +   +    +  ++      T  H F+    
Sbjct: 275 KNRAAKPDDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTSSFQKRVSTARHDFIKLSG 334

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
             +K  ALLQ L  S       ++FCN   +   + H L +   S    HG +    R++
Sbjct: 335 AENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLTENHISTVNYHGEVPAEERVE 394

Query: 287 ILSNFK--EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            L+ F+  EG    +V +DLAARGLD+ DV HV  FD P+ + +Y+HR GRT R G  GK
Sbjct: 395 NLNKFRNEEGDCPTLVCTDLAARGLDL-DVDHVIMFDFPSNSIDYLHRTGRTARMGAKGK 453

Query: 345 AFTLVAKEDIKHIDAIEKLIEK 366
             ++VAK+D+     IE+ ++K
Sbjct: 454 VTSIVAKKDVALATRIEEAMKK 475


>gi|145524966|ref|XP_001448305.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124415849|emb|CAK80908.1| unnamed protein product [Paramecium tetraurelia]
          Length = 475

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 120/333 (36%), Positives = 192/333 (57%), Gaps = 13/333 (3%)

Query: 24  PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRE 83
           P+ IQ   IPL+ + HDV  IA+TG+GKT ++ LP +  ++  + ++  PR L+L PTRE
Sbjct: 125 PSAIQQAIIPLIFEGHDVIAIAETGSGKTLAYALPGIMHMQ-AQPQITGPRILVLAPTRE 183

Query: 84  LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           LA Q+   ++ + K        L GGI    Q     +   V+I TPGR+LD    G L 
Sbjct: 184 LAQQIQTQYDLFVK-----TCCLFGGIQKPLQYFAKPQTPKVIIATPGRLLDFIKDG-LP 237

Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL-QNP 202
           + +I  +V+DEADRMLDMGF   I+++   V   RQTL FSAT   E+Q+++ N   ++P
Sbjct: 238 LKSITQVVLDEADRMLDMGFEDQIRDVLKEVRKDRQTLFFSATWPKEVQRLANNLCNEDP 297

Query: 203 KRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNL 261
             +++     S  + I    + +    +K   L++   Q +D  K  ++FC +K +   L
Sbjct: 298 VFLQLGERGLSVNKNITQSLIISGG--NKFEQLIEYFNQIKD--KKVLVFCQKKIDTQKL 353

Query: 262 CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321
            + L + G +   +HG++ Q  R  I+  F++G+ + ++ ++LA+RGLD+ DV  V N+D
Sbjct: 354 EYKLSQHGINARYLHGDLRQNQRDFIMQEFRDGSAKCLITTNLASRGLDVSDVDIVINYD 413

Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            P   E+YIHRIGRTGRAG+ G+A + +   D+
Sbjct: 414 FPENIEDYIHRIGRTGRAGKKGEALSFIEPNDL 446


>gi|224064015|ref|XP_002301349.1| predicted protein [Populus trichocarpa]
 gi|222843075|gb|EEE80622.1| predicted protein [Populus trichocarpa]
          Length = 499

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 120/361 (33%), Positives = 195/361 (54%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 126 DFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCVPALE 185

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++    +++   +IL PTRELA Q +   ++ GK+  + V    GG   +    +L +
Sbjct: 186 KIDQDNNFIQV---VILVPTRELALQTSQVCKELGKHLKIQVMATTGGTSLKDDIMRLYQ 242

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ N  +LV+DEAD++L   F P I+ +   +P  RQ L
Sbjct: 243 PVHLLVGTPGRILDLAKKGVCILKNCSMLVLDEADKLLSPEFQPSIEQLIRFLPSNRQIL 302

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++   + +L+ P  I +     T + I   +   + +  +K   L  L  S
Sbjct: 303 MFSATFPVTVKDFKDRYLEKPYVINL-MDELTLKGITQYY--AFVEERQKVHCLNTLF-S 358

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 359 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 418

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 419 TDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 478

Query: 362 K 362
           +
Sbjct: 479 Q 479


>gi|239945142|ref|ZP_04697079.1| DEAD-box RNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|239991603|ref|ZP_04712267.1| DEAD-box RNA helicase [Streptomyces roseosporus NRRL 11379]
          Length = 481

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 181/349 (51%), Gaps = 9/349 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L +   ++ A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 55  FTELDMPAHLLAALSAQGVSVPFPIQGATLPNTLAGRDVLGRGRTGSGKTLAFGLALLAR 114

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y ++  L +A ++GG+    Q   L  G
Sbjct: 115 TAGQRAEPRQPLALVLVPTRELAQQVTDALTPYARSVRLRLATVVGGMSIGRQVSALRGG 174

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D   RG   ++ + I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 175 AEVVVATPGRLKDLIERGDCTLDQVAITVLDEADQMADMGFMPQVTALLDQVRPEGQRML 234

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  +    T+EH  +  +     +         ++
Sbjct: 235 FSATLDRNVDLLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVHGTDKHRAT-------TE 287

Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              + G  ++F + K  V  L   L   G    A+HG   Q  R + L+ FK G + ++V
Sbjct: 288 IAAREGRVMMFLDTKHAVDRLTQDLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLV 347

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           A+++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 348 ATNVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLV 396


>gi|118616249|ref|YP_904581.1| ATP-dependent RNA helicase, RhlE1 [Mycobacterium ulcerans Agy99]
 gi|118568359|gb|ABL03110.1| ATP-dependent RNA helicase, RhlE1 [Mycobacterium ulcerans Agy99]
          Length = 524

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 124/361 (34%), Positives = 190/361 (52%), Gaps = 6/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   ++  +   G   P PIQI+T+P  L   DV G  +TG+GKT +F LPM++ 
Sbjct: 78  FADLGVGESLIEVLAARGISHPFPIQIETLPDTLGGRDVLGRGKTGSGKTLAFSLPMVSR 137

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     R   P  L+L PTRELA+Q+    +       L V  + GG+P   Q   L  G
Sbjct: 138 LAGRPRRPARPTGLVLAPTRELASQITATLQPLAAVNGLRVTTIFGGVPQGRQVTALNSG 197

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++   GR+ D   +  + +++IEI VIDEAD M D+GF+P +  I +  P   Q LL
Sbjct: 198 VDIVVACSGRLEDLMKQRLISLDSIEITVIDEADHMADLGFLPGVTRILAATPSGGQRLL 257

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT+ + + K+   FL +     V++  S   + + H F  + A   K   L+ +L  +
Sbjct: 258 FSATLDNGVDKLVNRFLHDAVLHSVDSSDSPVPQMVRHVFHVSGAAAKKD--LVHRL--A 313

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T +  I+F   K     L   L + G     +HGN+ Q +R + L+ F +G  +++VA
Sbjct: 314 SGTGRR-ILFMRTKHQARKLAKQLTESGVPAVDLHGNLSQPARDRNLAAFSKGEARVLVA 372

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ +  +  V + D P   + Y+HR GRT RAG  G   T+V  E  K   A+ 
Sbjct: 373 TDIAARGVHVDGIELVVHIDPPAEHKAYLHRSGRTARAGNAGDVVTVVLPEQRKDTHALM 432

Query: 362 K 362
           +
Sbjct: 433 R 433


>gi|13473704|ref|NP_105272.1| DEAD-box protein, ATP-independent RNA helicase [Mesorhizobium loti
           MAFF303099]
 gi|14024455|dbj|BAB51058.1| DEAD-BOX protein, ATP-independent RNA helicase [Mesorhizobium loti
           MAFF303099]
          Length = 620

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 123/351 (35%), Positives = 191/351 (54%), Gaps = 16/351 (4%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +G+ P +  A+   GY + TP+Q K + L L   D    AQTG+GKT +F L M   L  
Sbjct: 5   VGIVPALAQALEKRGYSELTPVQ-KAV-LELGSADALVSAQTGSGKTVAFGLAMAPTLLD 62

Query: 66  GRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           G  R      P  L + PTRELA QV    E   +    TVA  +GG+    + + LERG
Sbjct: 63  GAERFGAAMAPLALAVAPTRELALQVTRELEWLYEPTGATVASCVGGMDMRTERRALERG 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A +++ TPGR+ DH  R  L M+ ++ +V+DEAD MLD+GF   ++ I    P  R+TL+
Sbjct: 123 AHIVVGTPGRLRDHITRNSLDMSALKAVVLDEADEMLDLGFREDLEFILDAAPAERRTLM 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA----TYAQYSKKCALLQQL 238
           FSAT+   +  +++ + ++  RI     S+  E  +H  +       AQ  ++ A++  L
Sbjct: 183 FSATVPRSIATLAQGYQRDAVRI-----SAAGEEKQHLDIEYRALNVAQADRENAIINVL 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   KN ++FCN +  V +L      + FSV A+ G + Q  R   L   ++G  ++
Sbjct: 238 RFYE--AKNALVFCNTRAAVNHLTARFNNRNFSVVALSGELSQNERSHALQAMRDGRAKV 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            +A+D+AARG+D+P++  V + D+P   E  +HR GRTGRAGR G +  +V
Sbjct: 296 CIATDVAARGIDLPNLELVIHADLPTNPETLLHRSGRTGRAGRKGVSALIV 346


>gi|150395295|ref|YP_001325762.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150026810|gb|ABR58927.1| DEAD/DEAH box helicase domain protein [Sinorhizobium medicae
           WSM419]
          Length = 626

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 195/346 (56%), Gaps = 6/346 (1%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEK 65
           G++P +  A+   GY   TP+Q   +   L   D    AQTG+GKT +F L +  T++  
Sbjct: 6   GIAPAIAEALAKRGYETLTPVQQAMLDPALGTADALVSAQTGSGKTVAFGLALAPTLIGS 65

Query: 66  GR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            R  A+   P  L++ PTRELA QV    E   +    T+A  +GG+   ++ + L+RGA
Sbjct: 66  ARQFAQPGAPLALVIAPTRELALQVKRELEWLYEIAGATIASCVGGMDMRSERRMLDRGA 125

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            +++ TPGR+ DH  RG L ++ ++ +V+DEAD MLD+GF   ++ I    P  R+TL+F
Sbjct: 126 HIVVGTPGRLCDHIRRGSLDISELKAVVLDEADEMLDLGFREDLEFILEAAPADRRTLMF 185

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT+   +  +++N+ ++  RI V +       IE+  +   A   ++ A++  L   + 
Sbjct: 186 SATVPRSIATLAKNYQRDAVRIGVTSEQKQHGDIEYRAL-LVAPSDRENAIINVLRFYE- 243

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +N I+FC+ +  V +L      +GFSV A+ G + Q  R   L   ++G  ++ +A+D
Sbjct: 244 -ARNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQNERTHALQAMRDGRARVCIATD 302

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +AARG+D+P +  V + D+P  ++  +HR GRTGRAG+ G +  +V
Sbjct: 303 VAARGIDLPGLELVIHADLPTNSDTLLHRSGRTGRAGQKGVSALIV 348


>gi|327292761|ref|XP_003231078.1| ATP-dependent RNA helicase eIF4A [Trichophyton rubrum CBS 118892]
 gi|326466708|gb|EGD92161.1| ATP-dependent RNA helicase eIF4A [Trichophyton rubrum CBS 118892]
          Length = 396

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 212/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L+ +++  V   G+ +P+ IQ + I  V++  DV   AQ+GTGKTA+F    ++ 
Sbjct: 25  FDAMNLNSELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATF---SISA 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    ++  + LIL PTRELA Q+       G   N+     IGG       K L+ G
Sbjct: 82  LQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMNVDCHACIGGTNVREDMKALQDG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I   +P + Q +L
Sbjct: 142 PQVVVGTPGRVHDMIQRRVLKTDHIKMFVLDEADEMLSRGFTEQIYDIFQFLPQSTQVVL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 202 LSATMPPDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 260

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L+ + F+V A+HG+++Q  R  I+  F+ G+ ++++A+
Sbjct: 261 -TITQAVIFCNTRRKVDWLTDKLQARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIAT 319

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 320 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 379

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 380 FYSTQIEEMPMNVADL 395


>gi|323454961|gb|EGB10830.1| hypothetical protein AURANDRAFT_21789 [Aureococcus anophagefferens]
          Length = 510

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 135/387 (34%), Positives = 200/387 (51%), Gaps = 31/387 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           FA +GL   ++ A+ +    +PTPIQ++ +P+ L   D+ GIA TG+GKT +F +P++  
Sbjct: 67  FAGMGLERDLLDALGEKRITRPTPIQVQGMPVALAGRDMIGIAFTGSGKTVAFSVPLIVR 126

Query: 61  TILEKGRARVRM---PRTLILEPTRELAAQ---VADNFEKYGKNYN------LTVALLIG 108
            +  + R+ +R    P  L+L P+RELA Q   V D F    +         L  A  IG
Sbjct: 127 ALEAERRSPLRAGEGPVGLVLCPSRELARQTWEVVDFFMARLRGAGGRRGDVLRSACCIG 186

Query: 109 GIPFEAQNKKLER-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           G P   Q   L R G   ++ TPGR+ D     ++ +       +DE DRMLD+GF   +
Sbjct: 187 GEPKGPQLDDLRRRGVHAVVATPGRLKDFLESRQVRLGRCSYFCLDEGDRMLDLGFDEEV 246

Query: 168 QNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
             + +     RQTLLFSATM  + Q  +   L   + + VN   + A  ++      Y +
Sbjct: 247 HKVMNHFEAQRQTLLFSATMPQKFQDFARGALV--RSVLVNVSRAGAANLDVIQEVEYVK 304

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
              +   L + LQ   T    +IFC +K +V ++   L  +G    +IHG  DQ  R   
Sbjct: 305 LEARIVYLLECLQK--TAPPVVIFCERKGDVDDIHEYLLLKGVEAVSIHGGKDQGERNGA 362

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           +  FK G   ++VA+D+AA+GLD PD+ HV NFD+P   ENY+HRIGRTGR G+ G A T
Sbjct: 363 IDAFKRGAKDVLVATDVAAKGLDFPDIQHVINFDMPAEIENYVHRIGRTGRCGKTGVATT 422

Query: 348 LVAKE-------DIKHIDAIEKLIEKK 367
            + K        D+KH+     L+E K
Sbjct: 423 FINKTVEPSSLLDLKHL-----LVEAK 444


>gi|326475356|gb|EGD99365.1| eukaryotic translation initiation factor 4 [Trichophyton tonsurans
           CBS 112818]
 gi|326482351|gb|EGE06361.1| eukaryotic initiation factor 4A [Trichophyton equinum CBS 127.97]
          Length = 396

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 212/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L+ +++  V   G+ +P+ IQ + I  V++  DV   AQ+GTGKTA+F    ++ 
Sbjct: 25  FDAMNLNAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATF---SISA 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    ++  + LIL PTRELA Q+       G   N+     IGG       K L+ G
Sbjct: 82  LQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMNVDCHACIGGTNVREDMKALQDG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I   +P + Q +L
Sbjct: 142 PQVVVGTPGRVHDMIQRRVLKTDHIKMFVLDEADEMLSRGFTEQIYDIFQFLPQSTQVVL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 202 LSATMPPDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 260

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L+ + F+V A+HG+++Q  R  I+  F+ G+ ++++A+
Sbjct: 261 -TITQAVIFCNTRRKVDWLTDKLQARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIAT 319

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 320 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 379

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 380 FYSTQIEEMPMNVADL 395


>gi|125623300|ref|YP_001031783.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492108|emb|CAL97037.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300070051|gb|ADJ59451.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 446

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 127/365 (34%), Positives = 196/365 (53%), Gaps = 8/365 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +   + +  + KPT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTDFNFKDYINQTLENIKFEKPTEVQQKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119
             +      V+    +I  P+RELA Q+    +++ K N  + V+  +GG     Q KKL
Sbjct: 61  QNINPELDEVQ---AVITAPSRELATQIYKAAQEFVKVNDKIRVSNFVGGTDKARQIKKL 117

Query: 120 ERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           E     ++I TPGRI D      L+++     V+DEAD  LDMGF+  +  I S      
Sbjct: 118 EAAQPHIVIGTPGRIHDLVKSNALVVHTARTFVVDEADMTLDMGFLADVDQIASSFGKRV 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+  +LQ   + +L NP   ++   +  ++TIE+  V+T    S    LL QL
Sbjct: 178 QMLVFSATIPQKLQPFLKKYLHNPVMEKIANKTVISDTIENWLVSTKG--SSHNQLLLQL 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            ++ +     +IF N K  V ++ H L   G  V  IHG++  R R +I+++ K    Q 
Sbjct: 236 TKALNPYM-AMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQY 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  V H+ N ++P     ++HR+GR+GR G  G A TL +  D   I 
Sbjct: 295 VVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLRGTAITLYSPSDDSSIR 354

Query: 359 AIEKL 363
            IEK+
Sbjct: 355 EIEKM 359


>gi|260945084|ref|XP_002616840.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238850489|gb|EEQ39953.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 517

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 122/368 (33%), Positives = 193/368 (52%), Gaps = 7/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L  +++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTASFV+P L 
Sbjct: 31  SFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFVIPTLQ 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++   + ++   + LIL PTRELA Q +      GK+  +   +  GG   +    +L  
Sbjct: 91  MV---KPKLNKTQALILVPTRELALQTSQVVRTLGKHLGINCMVTTGGTNLKDDIMRLHD 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL+ TPGR+LD  +R     +   + ++DEAD+ML   F   I+ I +  P  RQ+L
Sbjct: 148 PVHVLVGTPGRVLDLASRNLADFSECPLFIMDEADKMLSREFKNVIEQILTFFPEGRQSL 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++   +  L  P  I +     T   I   +   + +  +K   L  L  S
Sbjct: 208 LFSATFPYAVKSFMDKHLTKPYEINLMD-ELTLRGISQFYA--FVEEKQKLHCLNTLF-S 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S    H  + Q++R K+   F++G ++ +V 
Sbjct: 264 KLQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVC 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L++  D  ++  IE
Sbjct: 324 SDLLTRGIDVQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYNLYKIE 383

Query: 362 KLIEKKVD 369
           + +  +++
Sbjct: 384 QELGTEIN 391


>gi|198458635|ref|XP_001361114.2| GA11795 [Drosophila pseudoobscura pseudoobscura]
 gi|198136412|gb|EAL25690.2| GA11795 [Drosophila pseudoobscura pseudoobscura]
          Length = 527

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 147/447 (32%), Positives = 230/447 (51%), Gaps = 26/447 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +V  +   G    TPIQ   IP +L   D  G AQTG+GKT +F LP   I
Sbjct: 9   FQSLGLRPWMVKQLTKLGLKGATPIQQNCIPAILSGKDCIGAAQTGSGKTFAFALP---I 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+          L+L PT ELA Q+++ F   G+   + V ++ GG     +++KL + 
Sbjct: 66  LERLSEEPVSHFALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQR 125

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++  PGR+ DH         +N++ LV+DEADRML+  F   +  I   +P TRQ L
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPSTRQNL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQLL 239
            FSATM D   K S  F  +   IE +  S  +T +T++  ++   A Y +   L++ L 
Sbjct: 186 FFSATMKD-FMKESSIFPISKDCIEWSQDSNVATVDTLDQRYLLC-ADYDRDMVLIESLR 243

Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + ++  +N   +IF N KK    L  +L+        +HG + Q+ R+  LS FK   I+
Sbjct: 244 KYREENENSNVMIFTNTKKYCQLLSMTLKSMDIDNVCLHGFMRQKERVAALSRFKSNHIR 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKH 356
            ++A+D+A+RGLDIP V  V N  +P   + YIHR+GRT RAGR G + ++     D++ 
Sbjct: 304 TLIATDVASRGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLEL 363

Query: 357 IDAIE-----KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           + AIE     KL E  +D            +E+I   Q N  R+ + +   +  FD R +
Sbjct: 364 LGAIETEINTKLTEHPID---------QRMVERI-FMQVNVTRRESEMQLDNNDFDERAQ 413

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQEN 438
           NY  +   +  K+ +++  L +  Q++
Sbjct: 414 NYRRKTWIMEGKDPDEMEALYRKKQKD 440


>gi|195581763|ref|XP_002080703.1| GD10627 [Drosophila simulans]
 gi|194192712|gb|EDX06288.1| GD10627 [Drosophila simulans]
          Length = 527

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 144/441 (32%), Positives = 229/441 (51%), Gaps = 14/441 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +V  +   G    TPIQ K IP +L   D  G A+TG+GKT +F LP   I
Sbjct: 9   FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALP---I 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+          L+L PT ELA Q+++ F   G+   + V ++ GG     +++KL + 
Sbjct: 66  LERLSEEPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQR 125

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++  PGR+ DH         +N++ LV+DEADRML   F   +  I   +P TRQ L
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLSGDFDESLAIIERCLPKTRQNL 185

Query: 182 LFSATMTDELQKVS-ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            FSATM D +++ S      N      ++  +T ET++  ++   A Y +   L++ L +
Sbjct: 186 FFSATMRDFMKESSIFPIASNCFEWSQDSDVATVETLDQRYLLC-ADYDRDMVLIEALRK 244

Query: 241 SQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            ++  +N   +IF N KK    L  +L+        +HG + Q+ R+  LS FK   I+ 
Sbjct: 245 YREENENANVMIFTNTKKYCQLLSMTLKNMDIDNVCLHGFMRQKERVAALSRFKSNQIRT 304

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHI 357
           ++A+D+AARGLDIP V  V N  +P   + YIHR+GRT RAGR G + ++     D++ +
Sbjct: 305 LIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELL 364

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            AIE+ I  K+     D       +E+I   Q N  R+ + +   +  FD R +NY  + 
Sbjct: 365 AAIEEEINTKLTEHPID----QRMVERI-FMQVNVTRRESEMQLDNNDFDERAQNYRRKT 419

Query: 418 SHIPLKESEKISKLQQDIQEN 438
             +  K+ +++  L +  Q++
Sbjct: 420 WIMQGKDPDQMEALYRKKQKD 440


>gi|71020871|ref|XP_760666.1| hypothetical protein UM04519.1 [Ustilago maydis 521]
 gi|74700620|sp|Q4P5U4|DBP4_USTMA RecName: Full=ATP-dependent RNA helicase DBP4
 gi|46100168|gb|EAK85401.1| hypothetical protein UM04519.1 [Ustilago maydis 521]
          Length = 869

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 128/358 (35%), Positives = 195/358 (54%), Gaps = 19/358 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS +    +  AGY   T IQ K++ L L+  DV G A+TG+GKT +F++P+L I
Sbjct: 60  FTQLPLSDRTCRGLKRAGYTDMTDIQAKSLSLSLKGKDVLGAARTGSGKTLAFLIPVLEI 119

Query: 63  LEKGRARVRMPR----TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L +   R   P      L++ PTRELA Q+ +   K G  +  +  L+IGG   + +  +
Sbjct: 120 LYR---RKWGPSDGLGALVISPTRELAIQIFEVLRKIGSYHTFSAGLVIGGKDVKQEKDR 176

Query: 119 LERGADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L R  ++LI TPGR+L H ++      +N+++LV+DEADR+LDMGF   +  I   +P  
Sbjct: 177 LSR-INILIATPGRLLQHMDQTLGFDTSNVQVLVLDEADRILDMGFSRTLNAIVENLPRN 235

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS---TAETIEHCFVATYAQYSKKCAL 234
           RQT+LFSAT T  ++ ++   LQ+P+ + V  P +   T   +E  ++    +  KK  L
Sbjct: 236 RQTMLFSATQTKRVKDLARLSLQDPEYVAVREPENEGCTPRGLEQHYM--LVELEKKLDL 293

Query: 235 LQQLLQSQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
           L   +++    K  ++F   C Q + V      L + G S+ A+HG   Q  R++I + F
Sbjct: 294 LFSFIRTHTKCK-ALVFMSSCRQVQFVHETFCKL-RPGVSLMALHGKQKQAKRLQIFTQF 351

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            +    L+ A+D+AARGLD P V  V   DVP   + YIHR+GRT R    G +   V
Sbjct: 352 TKTQHALLFATDIAARGLDFPAVDWVIQLDVPEDVDTYIHRVGRTARYTAKGNSLLFV 409


>gi|254573064|ref|XP_002493641.1| Putative nucleolar DEAD box RNA helicase [Pichia pastoris GS115]
 gi|238033440|emb|CAY71462.1| Putative nucleolar DEAD box RNA helicase [Pichia pastoris GS115]
 gi|328354532|emb|CCA40929.1| RNA Helicase [Pichia pastoris CBS 7435]
          Length = 766

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 124/356 (34%), Positives = 205/356 (57%), Gaps = 16/356 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L LS + +  +  A +++ T IQ + IP  LQ  D+ G A+TG+GKT +F++P++  
Sbjct: 44  FSELPLSRQTLIGLRGAHFIEMTGIQKEAIPPALQGQDILGAAKTGSGKTLAFLIPLIEM 103

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +          LI+ PTRELA Q+ +     GK+ + +  L+IGG  F+ +++++ +
Sbjct: 104 LLREDWNEFDGVGALIISPTRELAMQIYEVLLNIGKHSSFSCGLVIGGKDFKYESERIGK 163

Query: 122 GADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             +VLI TPGR+L H ++   L +NN+++L++DEADR+LDMGF   + +I S +P  RQT
Sbjct: 164 -INVLIGTPGRLLQHMDQSANLNINNLQMLILDEADRILDMGFKKTLDSIISSIPPQRQT 222

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPS----STAETIEHCFVATYAQYSKKCALLQ 236
           LLFSAT T  +Q ++   L NPK I  N+ S    +T +++E  ++      ++K   L 
Sbjct: 223 LLFSATQTKSVQDLARLSLTNPKYI--NSSSDLDLATPDSLEQSYIVV--PLNEKINTLW 278

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEK--QGFSVCAIHGNIDQRSRMKILSNFKE 293
             +++   +K+ I +F +  K V  L  +  K   G S+  +HG   Q +R++    F  
Sbjct: 279 SFIKTH--LKSKILVFLSSSKQVHFLYEAFRKLQPGISLMKLHGRQKQTARIETTVKFSH 336

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
                + A+D+ ARGLD P +  V   D P  A  YIHR+GR  RAG+ GK+  ++
Sbjct: 337 AQHCCLFATDVVARGLDFPAIDWVVQLDCPEDASTYIHRVGRCARAGKEGKSLLIL 392


>gi|295692275|ref|YP_003600885.1| ATP-dependent RNA helicase [Lactobacillus crispatus ST1]
 gi|295030381|emb|CBL49860.1| ATP-dependent RNA helicase [Lactobacillus crispatus ST1]
          Length = 453

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 137/413 (33%), Positives = 217/413 (52%), Gaps = 14/413 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  + P +   +    + KPT +Q K IP +L    V   A TG+GKT ++++P+   
Sbjct: 5   FIDSRIKPAIQAGLKKIHFEKPTKVQEKVIPAMLSDLSVVVQAATGSGKTHAYLVPIFNE 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQ---VADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +E+ +  V+   TL   P+RELA Q   VA    +     + ++A L GG   E Q +K 
Sbjct: 65  IEEDKRYVQAIVTL---PSRELADQLYKVARQL-RDAAGMHFSIAHLAGGTDRERQLEKY 120

Query: 120 ERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +     ++I TPGR+LD   +    ++ ++  VIDEAD  LDMGF+  I  + + +P   
Sbjct: 121 QNNTPQLVIATPGRLLDFVQKKVFAVDQVKTFVIDEADMTLDMGFLNDIDQVAAKLPKDV 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q   FSAT+  +L      ++ +P  I ++ PS  A TI++  +   ++  +K  L + L
Sbjct: 181 QIAAFSATIPVKLSNFLRKYMAHPDEIVIDNPSVIAPTIKNDLLDIGSK-DRKNVLYKLL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q  +   ++F N K+ V  L + L+ QG  V  IHG + +R R + L   ++G  Q 
Sbjct: 240 TMGQPYL--ALVFANTKQKVDELTNYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQYQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARGLDI  V  V N+++P   E  IHRIGRTGR G  G A TL+ +E++  I+
Sbjct: 298 VVASDLAARGLDIDGVSLVVNYEIPRDIEFVIHRIGRTGRNGLSGHAITLIREEEMNRIE 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            +EK+     D++      L P   K   ++ N   KN  +  K  G+ +++K
Sbjct: 358 ELEKM-GVHFDFVEIKNGELVP--RKHYRSRENRQSKNRKLDTKLVGYVKKEK 407


>gi|256079059|ref|XP_002575808.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238661058|emb|CAZ32043.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 625

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 132/392 (33%), Positives = 203/392 (51%), Gaps = 36/392 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L+  ++ ++ +    KPTPIQ   IP+ L   D+C  A+TG+GKT +F+LP+L  
Sbjct: 127 FIELSLAKPLLKSLTEMSLDKPTPIQCACIPVALLHRDICACARTGSGKTLAFLLPVLER 186

Query: 63  LEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           L K        + R L++ PTRELA Q+ +  EK  K    L + L  GG+   +Q   L
Sbjct: 187 LAKKSTDFNHAVTRALVISPTRELAVQIFNVAEKLVKYCPKLRIQLAAGGLDLHSQEASL 246

Query: 120 ERGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
               D+++ TPGR++DH  N     + +IE LV+DEAD++LD  F   I  I       R
Sbjct: 247 RLNPDLVVATPGRLIDHLSNAPSFNLQHIEYLVLDEADKLLDEYFAEQIGEIIKFCSTKR 306

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATMT+ +++++   L++P ++ +N  ++ A+ +   FV            +   
Sbjct: 307 QTLLFSATMTESVKELAILSLRDPVQVFLNQATAVAQCLHQEFVRIRPHREDDRRAIVIA 366

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ----GFSVCAIHGNIDQRSRMKILSNF--- 291
           L  +   K  I+F   KK+    CH +       G S   +HGN+ Q  R++ L  F   
Sbjct: 367 LLMRHFRKRTIVFLPTKKD----CHKMHIMLGLLGLSCTELHGNMTQAQRLEALKRFSYV 422

Query: 292 --------KEGTIQL-------------MVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
                   K  T QL             ++A+DLA+RGLDIP+V  V N+ +P   + Y+
Sbjct: 423 GTSDECKNKSATDQLTEMNNPDIRPVDILLATDLASRGLDIPNVQTVINYTLPQTMKQYV 482

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           HR+GRT R    G+A +LV ++D K +  I K
Sbjct: 483 HRVGRTARIMNVGRAVSLVGEDDRKVMKEIMK 514


>gi|328864018|gb|EGG13117.1| hypothetical protein MELLADRAFT_32308 [Melampsora larici-populina
           98AG31]
          Length = 966

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 135/423 (31%), Positives = 207/423 (48%), Gaps = 69/423 (16%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPML 60
           F  LGL P ++ A+L  G+  PTPIQ   +P +L     DV G+A+TG+GKT ++++P++
Sbjct: 117 FQSLGLHPALLRAILLRGFTTPTPIQRAVLPHILASPARDVVGMARTGSGKTLAYLIPLI 176

Query: 61  TILEKGRARVRMP-RTLILEPTRELAAQV-------ADNFEKYGKNYN------------ 100
             L  GR  V    R L++ PTRELA QV       A  F + G                
Sbjct: 177 HKL-GGRHNVLFGVRALVMVPTRELAVQVLKVGKDLAKGFVQGGGTQTGNEEEGGGKGEG 235

Query: 101 LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160
           L   L++GG   E Q        DV+I TPGR+L       L + +++ +V DEADR+ +
Sbjct: 236 LRWGLIVGGDSLEEQFAMFASNPDVIIATPGRLLHLAVEMNLDLKSVQYIVFDEADRLFE 295

Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
           MGF   +    S +P +RQTLLFSAT+   L + ++  LQNPK + +++ S  +  ++  
Sbjct: 296 MGFETQLHETLSRLPHSRQTLLFSATLPKTLVEFAKAGLQNPKLVRLDSESKISSDLQMG 355

Query: 221 F-------------------------------VATYAQYSKKCALLQQLLQSQDTMKNG- 248
           F                               V  Y  +       QQL   +   K+  
Sbjct: 356 FLSIKPNEKDAGLLVILADVIGVPKSDGTEIEVEDYEDHDTPYNRRQQLQAKRFDKKSSK 415

Query: 249 --------------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
                         I+F   K +V  L   L   G+ V  I+G +DQ +R   L+ F+ G
Sbjct: 416 GKFNPNPELAPHQTIVFAATKHHVEYLTGLLVSAGYRVSHIYGALDQAARRNQLNAFRAG 475

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++V +DLAARG+DIP + +V N+D P+ A  ++HR+GRT RAGR G A++LV + ++
Sbjct: 476 RTNILVVTDLAARGIDIPILENVINYDFPSSARAFVHRVGRTARAGRKGWAYSLVTQTEL 535

Query: 355 KHI 357
            ++
Sbjct: 536 PYL 538


>gi|242051801|ref|XP_002455046.1| hypothetical protein SORBIDRAFT_03g003520 [Sorghum bicolor]
 gi|241927021|gb|EES00166.1| hypothetical protein SORBIDRAFT_03g003520 [Sorghum bicolor]
          Length = 612

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 130/383 (33%), Positives = 196/383 (51%), Gaps = 21/383 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL  +V+ A+ + G  KPT IQ   +P VL    V   + TG+GKT +++LP++ 
Sbjct: 95  SFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQ 154

Query: 62  ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +L +  A      + R PR ++L PTREL  QV    +    +      ++ GG     Q
Sbjct: 155 LLRRDEAMLGISMKPRRPRAVVLCPTRELTEQVYRVAKSISHHARFRSTMVSGGTRLRPQ 214

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L    D+++ TPGRILDH   G ++  +I+ LV+DEAD M D GF P I+    L P
Sbjct: 215 EDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKF--LAP 272

Query: 176 FTR----------QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
                        QT+L +ATMT  +QK+ +   +    +  ++      T  H F+   
Sbjct: 273 LKNRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTSSFQKRVSTARHDFIKLS 332

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
              +K  ALLQ L  S       ++FCN   +   + H L +   S    HG +    R+
Sbjct: 333 GAENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERV 392

Query: 286 KILSNFK--EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           + L+ F+  EG    +V +DLAARGLD+ DV HV  FD P+ + +Y+HR GRT R G  G
Sbjct: 393 ENLNKFRNEEGDCPTLVCTDLAARGLDL-DVDHVIMFDFPSNSIDYLHRTGRTARMGAKG 451

Query: 344 KAFTLVAKEDIKHIDAIEKLIEK 366
           K  ++VAK+D+     IE+ ++K
Sbjct: 452 KVTSIVAKKDVALATRIEEAMKK 474


>gi|156087495|ref|XP_001611154.1| p68 RNA helicase protein [Babesia bovis T2Bo]
 gi|154798408|gb|EDO07586.1| p68 RNA helicase protein, putative [Babesia bovis]
          Length = 568

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 130/359 (36%), Positives = 193/359 (53%), Gaps = 14/359 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI------LEKGRAR 69
           + + G+++PTPIQ       L   DV G++QTG+GKT +F+LP L        +  G   
Sbjct: 198 IKNMGFIEPTPIQKVGWTSCLTGRDVVGVSQTGSGKTLAFLLPGLLHLLAQPPVTPGNG- 256

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  LIL PTREL  Q  +  +K+ +  NL  A+L GG+    Q ++L  G D+++ T
Sbjct: 257 ---PVILILAPTRELCQQTYEETKKFMRVMNLRGAILYGGVSKYQQQQQLTGGVDIMVAT 313

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGR+LD  + G L ++ +   V+DEADRMLDMGF P I+ I S +   RQTLLFSAT   
Sbjct: 314 PGRLLDCLSSGLLRLDRVSYFVLDEADRMLDMGFEPQIRMIASQIRPDRQTLLFSATWPA 373

Query: 190 ELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
            +++++  F + N   I+V     TA       V    +  +    L   L ++   K  
Sbjct: 374 SIRRLASEFCKTNCIYIQVGDKELTANPNITQTVKVL-RSDETFPFLCNFLTTEAYNKKI 432

Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           +IF   +     L   L ++G +  +IHGN  Q  R   +S F+ G + +MVA+D+A+RG
Sbjct: 433 LIFVESRIGADTLVRDLARRGLNALSIHGNKSQSQRDHTVSQFRSGAVNIMVATDVASRG 492

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE--DIKHIDAIEKLIE 365
           LDI ++ +V N DVP   E+YIHRIGRT R    G +  L   +  D +     ++LIE
Sbjct: 493 LDIKNIDYVVNMDVPRTIEDYIHRIGRTARGNMKGNSLLLFVNDYPDPRKARFAQRLIE 551


>gi|89894520|ref|YP_518007.1| hypothetical protein DSY1774 [Desulfitobacterium hafniense Y51]
 gi|89333968|dbj|BAE83563.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 424

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 199/349 (57%), Gaps = 8/349 (2%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
           A+   G V+PT IQ  TIPL+L   DV G ++TG+GKT +++LP+L  +++ +   R  +
Sbjct: 3   ALEKEGIVQPTEIQKLTIPLILSNRDVAGQSETGSGKTLAYLLPVLQKIDRNK---RENQ 59

Query: 75  TLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
            L+L PT ELA QV    +   ++    +T A +IG +    Q +KL+    +++ + GR
Sbjct: 60  VLVLTPTHELALQVQRQIQDLSRHLAATITSAAIIGNVNIARQIEKLKEKPHIIVGSAGR 119

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           IL+   + K+   +++ +V+DEAD++LD   I  ++ +        Q LLFSAT++ +  
Sbjct: 120 ILELIQKRKISAQSLKTIVLDEADQLLDERNIQTVKAVLKTAYKDSQILLFSATLSQDAI 179

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           + +  FL++P    +   ++   TI H       +   K  LL++L++  +  +  +IF 
Sbjct: 180 EQAAGFLKDPAVQRITMKATVVPTIIHQHF--MCEQRDKLELLRKLVRHLEPGR-ALIFI 236

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
           N+ + +      L   G    AI G   + +R + +++F+ G  QL+VASDLAARGLDI 
Sbjct: 237 NKTEEIEKTVERLSYHGLDAVAISGASQKENRRQAMADFRAGKTQLLVASDLAARGLDIK 296

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           ++ H+FN D+P   + Y+HR+GRTGRAG+ G A +LV + ++  +  IE
Sbjct: 297 NITHIFNLDIPEEPQLYLHRVGRTGRAGQSGVAVSLVTQRELPLLHKIE 345


>gi|312084924|ref|XP_003144474.1| DEAD/DEAH box helicase [Loa loa]
 gi|307760364|gb|EFO19598.1| DEAD/DEAH box helicase [Loa loa]
          Length = 783

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 113/354 (31%), Positives = 196/354 (55%), Gaps = 7/354 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +GL   +   +   G+ +PTPIQ K IPL++   D+  +++TG+GKTA+FV+P   IL+K
Sbjct: 36  IGLDHTLFKGIQKKGFRQPTPIQRKAIPLIIDGKDIVAMSRTGSGKTAAFVIP---ILQK 92

Query: 66  GRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
            + R ++  R LI+EPTRELA Q     ++ G+   L  A+L+GG   E Q + +    D
Sbjct: 93  LKVRDMKGIRALIIEPTRELAIQTFIVVKELGRFTGLRCAVLVGGDRIEEQFQAVHEKPD 152

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGR+L         ++ ++I+V DEADR+ +MGF   +  +   +P  RQTLLFS
Sbjct: 153 IVVATPGRLLHVIVEMDFRLSAVQIIVFDEADRLFEMGFAEQLHEVLKRIPENRQTLLFS 212

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT+ + +   S+  L +P  + ++     ++ +   F+  Y +   K A    L +    
Sbjct: 213 ATLPNSIIAFSKAGLSDPVLVRLDLAEKISDKLSMVFL--YCRSDDKLAAFIHLAREVVA 270

Query: 245 -MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +  ++FC   K+V  L    EK G     ++  +D  +R   +  F++    L++ +D
Sbjct: 271 GNEQTVVFCATMKHVEYLAAVAEKAGIDCVVLYSQLDCVARNINIQKFRKKECSLLIVTD 330

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +AARG+DIP +    N+  P + + ++HR+GR  RAGR GKA +L   +++ ++
Sbjct: 331 IAARGVDIPLLDVAINYHFPPKPKLFVHRVGRVARAGRFGKAISLFGADEVPYV 384


>gi|291448603|ref|ZP_06587993.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291351550|gb|EFE78454.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 496

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 181/349 (51%), Gaps = 9/349 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L +   ++ A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 70  FTELDMPAHLLAALSAQGVSVPFPIQGATLPNTLAGRDVLGRGRTGSGKTLAFGLALLAR 129

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y ++  L +A ++GG+    Q   L  G
Sbjct: 130 TAGQRAEPRQPLALVLVPTRELAQQVTDALTPYARSVRLRLATVVGGMSIGRQVSALRGG 189

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D   RG   ++ + I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 190 AEVVVATPGRLKDLIERGDCTLDQVAITVLDEADQMADMGFMPQVTALLDQVRPEGQRML 249

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  +    T+EH  +  +     +         ++
Sbjct: 250 FSATLDRNVDLLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVHGTDKHRAT-------TE 302

Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              + G  ++F + K  V  L   L   G    A+HG   Q  R + L+ FK G + ++V
Sbjct: 303 IAAREGRVMMFLDTKHAVDRLTQDLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLV 362

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           A+++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 363 ATNVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLV 411


>gi|254480020|ref|ZP_05093268.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214039582|gb|EEB80241.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 440

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 113/335 (33%), Positives = 183/335 (54%), Gaps = 10/335 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTLILE 79
           Y K T +Q + IP  L+  D+   A+TG+GKT +++LP L  IL     R      ++L 
Sbjct: 20  YEKATEVQEQVIPAALEGTDLRVSAETGSGKTVAYLLPTLQRILSAPINRKAGALAVVLV 79

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA QV  N     +   L    + GG  F+ Q   L +  +++I TPGR+L+H  +
Sbjct: 80  PTRELARQVQKNCRDLMQKTQLGAQAITGGADFKYQRALLRKNPELIIATPGRLLEHCEK 139

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE-LQKVSENF 198
           G   + +++ L++DEADRMLDMGF   +  + S     RQ ++ SAT+  + L  V+++ 
Sbjct: 140 GSADLGSLQTLILDEADRMLDMGFRDDVMKLASFCGAERQVIMLSATLKHKGLGGVAKDL 199

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLLQSQDTMKNGIIFCNQK 255
           L++P+ IEV+       +I H  +   +Q  K    CAL+      +      ++F N++
Sbjct: 200 LRDPQTIEVSEFRQPHSSIHHQRILADSQEHKDKLLCALM-----DKGGFTRALVFANKR 254

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
                L   L   G     +HG +    R  +++ F++  + ++ ASD+AARGLD+ D+ 
Sbjct: 255 TTAQRLAGLLSHHGLRCGCLHGEMSTEERKHVMTQFRDSKVDMVCASDVAARGLDVKDID 314

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
            V N+D+P + ++Y+HR GRTGRAG  G A +LV+
Sbjct: 315 LVVNYDLPQKGDDYLHRTGRTGRAGATGLAISLVS 349


>gi|196000801|ref|XP_002110268.1| hypothetical protein TRIADDRAFT_23332 [Trichoplax adhaerens]
 gi|190586219|gb|EDV26272.1| hypothetical protein TRIADDRAFT_23332 [Trichoplax adhaerens]
          Length = 497

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 114/353 (32%), Positives = 198/353 (56%), Gaps = 6/353 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F  + L P+++  +   GY+  TP+Q++ IP  L + ++   + TG+GKT SF++P+  
Sbjct: 136 EFEHVSLDPRIMKNLQANGYISMTPVQMQVIPAALSKRNLLVSSPTGSGKTGSFLIPLIH 195

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKY--GKNYNLTVALLIGGIPFEAQNK 117
           +T  EK   + + P+ LIL PTREL  Q+ D  ++   G+  N+   L++GG+P   Q  
Sbjct: 196 MTFFEKDDEQEQAPKVLILSPTRELCIQIEDQCKEIMTGRLPNMKTCLIVGGLPLPQQLY 255

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L++G   +I TPGR++D  ++ ++  + ++ +VIDE D M+ +GF   ++ I  ++P  
Sbjct: 256 RLKQGIQFVIATPGRLIDIISKHEINFSKVKTVVIDEVDAMMQLGFEKQVEQIMQVIPRD 315

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            QTL+FSAT+T  ++K++   L NP +I V  P+S   +++H  V    + SKK  L   
Sbjct: 316 HQTLMFSATVTVGVEKMTSVMLSNPIKISVGKPNSLNPSVKH-LVLWVEEQSKKKMLFTI 374

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLE-KQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +   +      +IF   K     L  ++  K      ++HG+  Q+ R+  L  F EG  
Sbjct: 375 INDGKHFHPPTLIFVASKIGADFLADAINAKCRIRAASLHGDKPQQDRINTLKLFLEGKH 434

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            ++V + +A RG+D+  V  V +FD+P     YIH++GRTGR    G A +L+
Sbjct: 435 PILVTTGVAGRGIDLECVKQVIHFDLPTNIHEYIHQVGRTGRLHSLGWAISLI 487


>gi|146319393|ref|YP_001199105.1| superfamily II DNA/RNA helicase [Streptococcus suis 05ZYH33]
 gi|146321596|ref|YP_001201307.1| superfamily II DNA/RNA helicase [Streptococcus suis 98HAH33]
 gi|253752416|ref|YP_003025557.1| helicase [Streptococcus suis SC84]
 gi|253754242|ref|YP_003027383.1| helicase [Streptococcus suis P1/7]
 gi|253756176|ref|YP_003029316.1| helicase [Streptococcus suis BM407]
 gi|145690199|gb|ABP90705.1| Superfamily II DNA and RNA helicase [Streptococcus suis 05ZYH33]
 gi|145692402|gb|ABP92907.1| Superfamily II DNA and RNA helicase [Streptococcus suis 98HAH33]
 gi|251816705|emb|CAZ52347.1| putative helicase [Streptococcus suis SC84]
 gi|251818640|emb|CAZ56475.1| putative helicase [Streptococcus suis BM407]
 gi|251820488|emb|CAR47236.1| putative helicase [Streptococcus suis P1/7]
 gi|292559021|gb|ADE32022.1| putative ATP-dependent RNA helicase [Streptococcus suis GZ1]
 gi|319758822|gb|ADV70764.1| superfamily II DNA/RNA helicase [Streptococcus suis JS14]
          Length = 447

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 194/371 (52%), Gaps = 19/371 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D+ L P +  A+ +  +V+PT +Q K IP+VL   D+ G ++TG+GKT +F++P  
Sbjct: 1   MKFTDMKLKPYIQEALKEINFVQPTEVQEKLIPVVLSGRDLIGESKTGSGKTHTFLIP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL--LIGGIPFEAQNKK 118
            I +K    +   + +I  P+RELA Q+     +   + +  V +   +GG     Q  K
Sbjct: 59  -IFQKLNEELDQVQAVITAPSRELATQIYQAARQLASHSDTEVRVTNYVGGTDKNRQIDK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+     +++ TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LQASQPHIVVGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-----AQYSKKC 232
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TIE+  ++T      AQ  +  
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEQIKTHTVISDTIENWLISTKGRDRNAQILEVT 237

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L+Q  L         +IF N K     L   L   G  V  IHG+I  R R ++++  K
Sbjct: 238 KLMQPYL--------AMIFVNTKTRADELHSYLTANGLRVAKIHGDIPPRERKRMMNQVK 289

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
               Q +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    
Sbjct: 290 NLDYQYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGIAITLYQPS 349

Query: 353 DIKHIDAIEKL 363
           D   I  +EKL
Sbjct: 350 DDADIRELEKL 360


>gi|145534991|ref|XP_001453234.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124420945|emb|CAK85837.1| unnamed protein product [Paramecium tetraurelia]
          Length = 567

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 143/418 (34%), Positives = 220/418 (52%), Gaps = 47/418 (11%)

Query: 1   MDFADLGLSPKVVC-AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M F D+   P+++   +L AG+  PT IQ +   + L  HD+ GIAQTG+GKT +F+LP 
Sbjct: 111 MRFEDVQCFPQILMDLLLKAGFKGPTAIQAQGWSIALTGHDLIGIAQTGSGKTLAFLLPA 170

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  +   +AR    + LIL PTREL  Q+ + F+K+     L  A L GG     Q  +L
Sbjct: 171 IVHI-LAQARSHDAKCLILAPTRELTLQIYEQFQKFSVGSQLYAACLYGGQDRYIQKSQL 229

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  VLI  PG            + + +I     ADRMLDMGF P I+ +   +   RQ
Sbjct: 230 RKGPQVLIACPG------------LYHPQI-----ADRMLDMGFEPQIRKVVDQIRPQRQ 272

Query: 180 TLLFSATMTDELQKVSENFL-QNPKRIEV-NTPSSTAETIEHCFVATYA----------- 226
           T+LFSAT   E+QK++ +F  Q P  I++ N   ++ + I+       A           
Sbjct: 273 TMLFSATWPKEVQKLALDFCKQEPVHIQIGNVELTSNKMIKQIVYVMKAIEKNQRYNQTI 332

Query: 227 ---QYSKKCALLQQLLQSQD-TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
              QY     +L+ L   +D   K  +IFC+ KK    L  +L+++G    A+HG+  Q 
Sbjct: 333 DDHQYLCYLNILRLLYLLKDIAHKKILIFCSTKKGCDQLQKTLDREGIRCLALHGDKKQS 392

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R  ++S+F+ G    ++A+D+A+RGLDI D+  V N+D+P   E+Y+HRIGRTGRAG +
Sbjct: 393 ERDYVMSHFRNGRSTALIATDVASRGLDIKDIEIVVNYDMPKVIEDYVHRIGRTGRAGAN 452

Query: 343 GKAFTLVAKEDIKHI--DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           G++ +  A ++   +  D +E L E + D +  +L SL        + Q+N     NP
Sbjct: 453 GQSISFFASDEDARMAKDLVEILRESQND-IPYELRSL--------VDQNNKGNNYNP 501


>gi|299782998|gb|ADJ40996.1| ATP-dependent RNA helicase [Lactobacillus fermentum CECT 5716]
          Length = 395

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 131/377 (34%), Positives = 208/377 (55%), Gaps = 14/377 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L+  +  A+ D  + +PT +Q + IPL+L    V G ++TG+GKT +F+LP+ + 
Sbjct: 5   FADLHLADFLTPALKDLHFERPTAVQARVIPLILNGKSVVGQSRTGSGKTHAFLLPIFSQ 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKL- 119
           L      V+    +I  P+RELA Q+ +  ++  +     LT+   +GG   E Q ++L 
Sbjct: 65  LAPNNQTVQ---AVITTPSRELAYQIYNAAKQLNRFATTPLTIHNYVGGTDKEHQVEQLN 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R   ++I TPGRILD  N   L ++     VIDEAD  LDMGF+  +  I +  P   Q
Sbjct: 122 RRQPQLVIGTPGRILDLINSQALDIHTASQFVIDEADMTLDMGFLETVDQIAARFPEKLQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++FSAT+   L+   + +L+NP   E+ T +     +E+  ++T  +   K  L+ +LL
Sbjct: 182 MMVFSATIPQGLRPFLKKYLENPVIEEIPTETVINPNVENWLMSTKGR--DKNDLVYRLL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     ++F N +     L + L+++G  V  IHG ++ R+R + +   ++   Q +
Sbjct: 240 TLGDPYL-ALVFANTRDRATELANYLQERGLKVALIHGGLEPRARKRTMRQIRDMDYQYI 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           VA+DLAARG+D+  V  V N D+P+  E +IHR+GRTGRA   G A TL A  ED+    
Sbjct: 299 VATDLAARGIDLEGVSLVLNDDIPSDLEYFIHRVGRTGRANMAGTAITLYAPAEDV---- 354

Query: 359 AIEKLIEKKVDWLNGDL 375
            I KL E+ + ++  DL
Sbjct: 355 LIXKLEERGITFIPKDL 371


>gi|240281151|gb|EER44654.1| ATP-dependent RNA helicase eIF4A [Ajellomyces capsulatus H143]
 gi|325092352|gb|EGC45662.1| RNA helicase [Ajellomyces capsulatus H88]
          Length = 398

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 129/376 (34%), Positives = 212/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L  +++  V   G+ +P+ IQ + I  V++  DV   AQ+GTGKTA+F    ++ 
Sbjct: 27  FDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATF---SISA 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    ++  + LIL PTRELA Q+       G   ++     IGGI      K L+ G
Sbjct: 84  LQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSIECHACIGGISVREDMKALQDG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I   +P + Q +L
Sbjct: 144 PQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSHGFTEQIYDIFQFLPQSTQVVL 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 204 LSATMPQDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG+++Q+ R  I+  F+ G+ ++++A+
Sbjct: 263 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQQQRDVIMKEFRSGSSRVLIAT 321

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 322 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 381

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 382 FYSTQIEEMPMNVADL 397


>gi|302502754|ref|XP_003013338.1| hypothetical protein ARB_00523 [Arthroderma benhamiae CBS 112371]
 gi|291176901|gb|EFE32698.1| hypothetical protein ARB_00523 [Arthroderma benhamiae CBS 112371]
          Length = 455

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 129/367 (35%), Positives = 207/367 (56%), Gaps = 5/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L+ +++  V   G+ +P+ IQ + I  V++  DV   AQ+GTGKTA+F    ++ 
Sbjct: 25  FDAMNLNSELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATF---SISA 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    ++  + LIL PTRELA Q+       G   N+     IGG       K L+ G
Sbjct: 82  LQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMNVDCHACIGGTNVREDMKALQDG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I   +P + Q +L
Sbjct: 142 PQVVVGTPGRVHDMIQRRVLKTDHIKMFVLDEADEMLSRGFTEQIYDIFQFLPQSTQVVL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 202 LSATMPPDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 260

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L+ + F+V A+HG+++Q  R  I+  F+ G+ ++++A+
Sbjct: 261 -TITQAVIFCNTRRKVDWLTDKLQARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIAT 319

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 320 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 379

Query: 363 LIEKKVD 369
               +++
Sbjct: 380 FYSTQIE 386


>gi|150951242|ref|XP_001387532.2| ATP-dependent RNA helicase DBP4 (Helicase CA4) (Helicase UF1)
           [Scheffersomyces stipitis CBS 6054]
 gi|284018077|sp|A3GGE9|DBP4_PICST RecName: Full=ATP-dependent RNA helicase DBP4
 gi|149388432|gb|EAZ63509.2| ATP-dependent RNA helicase DBP4 (Helicase CA4) (Helicase UF1)
           [Pichia stipitis CBS 6054]
          Length = 765

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 121/355 (34%), Positives = 201/355 (56%), Gaps = 13/355 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL ++ + +  + ++ ++  T IQ KTIP+ L+  D+ G A+TG+GKT +F++P++  
Sbjct: 49  FSDLPITQETLRGLNESSFMSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPVVES 108

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         LI+ PTRELA Q  +   K GK    +  L+ GG   + + +++ R
Sbjct: 109 LIRNKITEHDGLAALIVSPTRELAVQTFEVLTKIGKYNTFSAGLVTGGKDVQYEKERVSR 168

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+ TPGRI  H N    +  +N+++LV+DEADR LDMGF   I NI   +P TRQT
Sbjct: 169 -MNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNIVGHLPPTRQT 227

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTP---SSTAETIEHCFVATYAQYSKKCALLQQ 237
           LLFSAT++D ++ ++   L NPKRI V++    S+T E+++  ++       +K  +L  
Sbjct: 228 LLFSATVSDSVKDLARLSLTNPKRIGVSSDQDVSATPESLDQYYIRI--PLDEKLDVLWS 285

Query: 238 LLQSQDTMKNGI-IFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            ++S   +K+ I +F +  K V     +    + G S+  ++G   Q SR++    F + 
Sbjct: 286 FIKSH--LKSKILVFFSSSKQVQYAYETFRTLQPGISLLKLYGRHKQTSRLETTVKFTQA 343

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
               + A+D+ ARGLD P +  V   D P  A  Y+HR+GR  R GR GK+  ++
Sbjct: 344 QYACLFATDIVARGLDFPAIDWVVQVDCPEDAVTYVHRVGRAARFGRQGKSLLML 398


>gi|302506493|ref|XP_003015203.1| hypothetical protein ARB_06326 [Arthroderma benhamiae CBS 112371]
 gi|291178775|gb|EFE34563.1| hypothetical protein ARB_06326 [Arthroderma benhamiae CBS 112371]
          Length = 816

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 130/392 (33%), Positives = 208/392 (53%), Gaps = 26/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DL LS      +  + + + T IQ + IP  LQ  D+ G A+TG+GKT +F++P+L  
Sbjct: 52  FTDLPLSEPTRLGLSASHFKELTDIQSRAIPHALQGRDILGAAKTGSGKTLAFLVPVLEN 111

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  K          LI+ PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L R
Sbjct: 112 LYRKQWTEYDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLQEEQERLGR 171

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++      +NI++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 172 -MNILVCTPGRMLQHMDQTAAFDTDNIQMLVLDEADRIMDMGFQSTVDAIVEHLPKERQT 230

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYSKKCALLQQL 238
           +LFSAT T ++  ++   LQ+P+ I V+  +S+A   T++  +V T      K   L   
Sbjct: 231 MLFSATQTKKVSDLARLSLQDPEYISVHQTASSATPSTLQQHYVVT--PLPDKLDTLWSF 288

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ---GFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++S  ++K+ II        V   +   +Q   G  +  +HG   Q +R+ I   F    
Sbjct: 289 IRS--SLKSKIIVFFSSSKEVRFVYEAFRQMQPGIPLLHLHGRQKQGARLDITHKFSASK 346

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
              + A+D+ ARGLD P V  V   D P  ++ YIHR+GRT R  R G+A   +  +  +
Sbjct: 347 NSCLFATDVVARGLDFPAVDWVIQLDCPEDSDTYIHRVGRTARYERDGRAVLFL--DPSE 404

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
            I  + +L +KK+            P+EKI+I
Sbjct: 405 EIGMLSRLEQKKI------------PIEKINI 424


>gi|294954210|ref|XP_002788054.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
 gi|239903269|gb|EER19850.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
          Length = 733

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 129/362 (35%), Positives = 196/362 (54%), Gaps = 23/362 (6%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--ILEKGRARVR- 71
           A+  A + KPTPIQ   IP  L   DV  IA TG+GKT ++++P++   I  K  A +  
Sbjct: 210 ALKHAKFEKPTPIQCVAIPAALSGRDVLAIADTGSGKTLAYLMPLIMHIIYHKEHADLAD 269

Query: 72  ----------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                      P  L+L PTRELA Q+     K GK   +T   L GG+    Q K L +
Sbjct: 270 RPAPTKDHPACPFALVLCPTRELAVQIEKTIYKLGKYIGITSTTLAGGLSKYEQFKDLRK 329

Query: 122 GA-DVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           G  D+++  PGR +D     G  L  +   +V+DEADRML+MGF   ++++   V   RQ
Sbjct: 330 GTCDIVVGNPGRCIDMVKEHGMSLTGDTAWVVLDEADRMLNMGFENQVRSLVQRVRPDRQ 389

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSST---AETIEHCFVATYAQYSKKCALLQ 236
           T+LFSATM  ++++++   +Q+P R+ V   ++T   A+ +    V    +  K   L +
Sbjct: 390 TMLFSATMPPKIERLARYIMQDPVRLFVGASATTGGAAQAVTQDVVVVEEKDDKFNWLSE 449

Query: 237 QLLQ----SQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNF 291
            L      +Q+     +IF NQK     L  ++ E       A+HG+ DQ  RMKI+++F
Sbjct: 450 NLPHILDDAQEEDGQVLIFVNQKSGASELAVAIREFMSLPCEALHGDSDQNDRMKIMADF 509

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +    +++VA+D+A+RGLDIP V  V  +D+ N    + HR+GRTGRAG  G A TL+ +
Sbjct: 510 RSRKTKVLVATDVASRGLDIPAVKEVICYDMSNTLTTHTHRLGRTGRAGHTGHATTLLVR 569

Query: 352 ED 353
           +D
Sbjct: 570 KD 571


>gi|302665680|ref|XP_003024449.1| hypothetical protein TRV_01412 [Trichophyton verrucosum HKI 0517]
 gi|291188502|gb|EFE43838.1| hypothetical protein TRV_01412 [Trichophyton verrucosum HKI 0517]
          Length = 816

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 130/392 (33%), Positives = 208/392 (53%), Gaps = 26/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DL LS      +  + + + T IQ + IP  LQ  D+ G A+TG+GKT +F++P+L  
Sbjct: 52  FTDLPLSEPTRLGLSASHFKELTDIQSRAIPHALQGRDILGAAKTGSGKTLAFLVPVLEN 111

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  K          LI+ PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L R
Sbjct: 112 LYRKQWTEYDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLQEEQERLGR 171

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++       NI++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 172 -MNILVCTPGRMLQHMDQTAAFDTGNIQMLVLDEADRIMDMGFQSTVDAIVEHLPKERQT 230

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYSKKCALLQQL 238
           +LFSAT T ++  ++   LQ+P+ I V+  +S+A   T++  +V T      K   L   
Sbjct: 231 MLFSATQTKKVSDLARLSLQDPEYISVHQTASSATPSTLQQHYVVT--PLPDKLDTLWSF 288

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ---GFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++S  ++K+ II        V   +   +Q   G  +  +HG   Q +R+ I   F    
Sbjct: 289 IRS--SLKSKIIVFFSSSKEVRFVYEAFRQMQPGIPLLHLHGRQKQGARLDITHKFSASK 346

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
              + A+D+ ARGLD P V  V   D P  ++ YIHR+GRT R  R+G+A   +  +  +
Sbjct: 347 NSCLFATDVVARGLDFPAVDWVIQLDCPEDSDTYIHRVGRTARYERNGRAVLFL--DPSE 404

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
            I  + +L +KK+            P+EKI+I
Sbjct: 405 EIGMLSRLEQKKI------------PIEKINI 424


>gi|195171912|ref|XP_002026746.1| GL13229 [Drosophila persimilis]
 gi|194111680|gb|EDW33723.1| GL13229 [Drosophila persimilis]
          Length = 455

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 120/318 (37%), Positives = 178/318 (55%), Gaps = 15/318 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF + G    V+  +   G+ KPT IQ +  P+ L   D+ G+AQTG+GKT ++VLP +
Sbjct: 142 IDFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIALSGRDLVGVAQTGSGKTLAYVLPAV 201

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA Q+     ++G N ++    + GG P   
Sbjct: 202 VHINNQPRLERGDG----PIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQ 257

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 258 QARDLERGVEIVIATPGRLIDFLERGTTTLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 317

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCA 233
              RQ L++SAT   E+++++E FL N   I+VN  S T     +   +      S+K  
Sbjct: 318 RPDRQVLMWSATWPKEVRQLAEEFLTN--YIQVNIGSLTLSANHNILQIVDVCDESEKLG 375

Query: 234 LLQQLLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
            L +LL   S +     IIF   KK V  +  ++ +QG+  CAIHG+  Q+ R  +LS+F
Sbjct: 376 KLIKLLSDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSF 435

Query: 292 KEGTIQLMVASDLAARGL 309
           + G   ++VA+D+AARGL
Sbjct: 436 RNGRHSILVATDVAARGL 453


>gi|115459616|ref|NP_001053408.1| Os04g0533000 [Oryza sativa Japonica Group]
 gi|75327302|sp|Q7XMK8|RH6_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 6
 gi|32489827|emb|CAE04571.1| OSJNBb0039L24.10 [Oryza sativa Japonica Group]
 gi|113564979|dbj|BAF15322.1| Os04g0533000 [Oryza sativa Japonica Group]
 gi|125591093|gb|EAZ31443.1| hypothetical protein OsJ_15580 [Oryza sativa Japonica Group]
 gi|215701173|dbj|BAG92597.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 498

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 120/361 (33%), Positives = 197/361 (54%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 125 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 184

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++ +  +++   +IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 185 KIDQDKNAIQV---VILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRLYQ 241

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ N  +LV+DEAD++L   F P IQ +   +P  RQ L
Sbjct: 242 PVHLLVGTPGRILDLTKKGVCVLKNCSMLVMDEADKLLSPEFQPSIQELIRYLPSNRQIL 301

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +++  + +L  P  I +     T + I   +   + +  +K   L  L  S
Sbjct: 302 MFSATFPVTVKEFKDKYLPKPYVINL-MDELTLKGITQFY--AFVEERQKVHCLNTLF-S 357

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 358 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 417

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 418 TDLFTRGIDIQAVNVVINFDFPKSAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 477

Query: 362 K 362
           +
Sbjct: 478 Q 478


>gi|302667761|ref|XP_003025461.1| hypothetical protein TRV_00401 [Trichophyton verrucosum HKI 0517]
 gi|291189571|gb|EFE44850.1| hypothetical protein TRV_00401 [Trichophyton verrucosum HKI 0517]
          Length = 455

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 129/367 (35%), Positives = 207/367 (56%), Gaps = 5/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L+ +++  V   G+ +P+ IQ + I  V++  DV   AQ+GTGKTA+F    ++ 
Sbjct: 25  FDAMNLNSELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATF---SISA 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    ++  + LIL PTRELA Q+       G   N+     IGG       K L+ G
Sbjct: 82  LQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMNVDCHACIGGTNVREDMKALQDG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I   +P + Q +L
Sbjct: 142 PQVVVGTPGRVHDMIQRRVLKTDHIKMFVLDEADEMLSRGFTEQIYDIFQFLPQSTQVVL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 202 LSATMPPDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 260

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L+ + F+V A+HG+++Q  R  I+  F+ G+ ++++A+
Sbjct: 261 -TITQAVIFCNTRRKVDWLTDKLQARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIAT 319

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 320 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 379

Query: 363 LIEKKVD 369
               +++
Sbjct: 380 FYSTQIE 386


>gi|145245621|ref|XP_001395078.1| ATP-dependent RNA helicase dhh1 [Aspergillus niger CBS 513.88]
 gi|142981121|sp|A2QY39|DHH1_ASPNC RecName: Full=ATP-dependent RNA helicase dhh1
 gi|134079784|emb|CAK40919.1| unnamed protein product [Aspergillus niger]
          Length = 505

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 191/362 (52%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E+   +    + LIL PTRELA Q +   +  GK+  + V +  GG        +L 
Sbjct: 107 ---ERINPKSTKTQALILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRLN 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 164 DAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  ++NP  I +     T   I   +   + +  +K   L  L  
Sbjct: 224 MLFSATFPLIVKSFKDKHMRNPYEINL-MDELTLRGITQYYA--FVEEKQKVHCLNTLF- 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q+ R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYKI 399

Query: 361 EK 362
           E+
Sbjct: 400 EQ 401


>gi|125549135|gb|EAY94957.1| hypothetical protein OsI_16765 [Oryza sativa Indica Group]
          Length = 484

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 120/361 (33%), Positives = 197/361 (54%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 111 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 170

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++ +  +++   +IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 171 KIDQDKNAIQV---VILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRLYQ 227

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ N  +LV+DEAD++L   F P IQ +   +P  RQ L
Sbjct: 228 PVHLLVGTPGRILDLTKKGVCVLKNCSMLVMDEADKLLSPEFQPSIQELIRYLPSNRQIL 287

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +++  + +L  P  I +     T + I   +   + +  +K   L  L  S
Sbjct: 288 MFSATFPVTVKEFKDKYLPKPYVINL-MDELTLKGITQFY--AFVEERQKVHCLNTLF-S 343

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 344 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 403

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 404 TDLFTRGIDIQAVNVVINFDFPKSAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 463

Query: 362 K 362
           +
Sbjct: 464 Q 464


>gi|157113939|ref|XP_001652148.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108877512|gb|EAT41737.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 607

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 131/382 (34%), Positives = 208/382 (54%), Gaps = 37/382 (9%)

Query: 3   FADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + DL   LS  V+  +   G+ K TP+Q  TIPL+L   DV   A TG+GKT +FV+P+L
Sbjct: 8   WTDLAKPLSSPVLEVIAGFGFQKMTPVQAATIPLLLSYKDVAAEAVTGSGKTLAFVVPLL 67

Query: 61  TILEKGRARVRMPRT----LILEPTRELAAQVADNFEKYGKNYNLTV---ALLIGGIPFE 113
            +L K +      ++    +I+ PTRELA Q++D  + + ++  L +    LLIGG P E
Sbjct: 68  ELLLKRQRDTIWKKSEIGAIIISPTRELATQISDVLQDFLEHEKLAIFKQKLLIGGNPVE 127

Query: 114 AQNKKLER-GADVLICTPGRILDHFNRGKLL-----MNNIEILVIDEADRMLDMGFIPYI 167
                + + GA+VLI TPGR+ D   R   L     + ++E+LV+DEADR+LD+GF   I
Sbjct: 128 EDVDSIRKEGANVLIATPGRLKDLLERKGDLNLTVKVKSLELLVLDEADRLLDLGFESTI 187

Query: 168 QNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATY 225
             I   +P  R+T LFSAT T E++ +    L+NP  + V   +  ST + +++ +V   
Sbjct: 188 NTILGYLPRQRRTGLFSATQTKEVKDLMRAGLRNPVLVSVKEKATVSTPKLLQNFYVIVE 247

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS---------VCAIH 276
            +  +K A++   ++ Q+  K  I F          C  +E  G +         V A+H
Sbjct: 248 PE--QKLAVMLDFIERQELKKAMIFFPT--------CACVEYWGIALTELLKPTKVLALH 297

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G + +  R +IL +F+E    L++ +DL ARG+DIP+V  V  +D P+ A  ++HR+GRT
Sbjct: 298 GKM-KAQRNRILKDFRESENALLLCTDLLARGVDIPEVDWVLQWDAPSNAAAFVHRVGRT 356

Query: 337 GRAGRHGKAFTLVAKEDIKHID 358
            R G  G A  ++   +  ++D
Sbjct: 357 ARQGHEGNALIMLLPSEDAYVD 378


>gi|170100080|ref|XP_001881258.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164643937|gb|EDR08188.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 442

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 119/362 (32%), Positives = 192/362 (53%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D+ L  +++  + +AG+ KP+PIQ + IP+ L + D+   A+ GTGKTA+FV+P L
Sbjct: 28  IEFEDMFLRRELLMGIFEAGFEKPSPIQEEAIPIALTKRDILARAKNGTGKTAAFVIPSL 87

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  + +++    L+L PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 88  QQIDITKNKIQ---ALLLVPTRELALQTSQVCKTLGKHMGVQVMVTTGGTTLKDDILRLS 144

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               VL+ TPGRILD   +    +    + V+DEAD++L   F P ++ + S +P  RQ 
Sbjct: 145 ESVHVLVGTPGRILDLAGKNVADLTECPVFVMDEADKLLSPEFAPVMEQLLSYLPTERQV 204

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  + +P  I +    +     ++     Y +  +K   L  L  
Sbjct: 205 MLFSATFPMIVKDFKDKHMNSPYEINLMDELTLRGVTQY---YAYVEERQKVHCLNTLF- 260

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q  R ++  +F+ G  + +V
Sbjct: 261 SKLQINQSIIFCNSTNRVELLAKKVTELGYSCFYSHAKMLQSHRNRVFHDFRNGVCRNLV 320

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  LV  ED  ++  I
Sbjct: 321 CSDLLTRGIDIQAVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINLVTYEDRFNLYKI 380

Query: 361 EK 362
           E+
Sbjct: 381 EQ 382


>gi|73965239|ref|XP_861886.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 14 [Canis
           familiaris]
          Length = 588

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 125/374 (33%), Positives = 193/374 (51%), Gaps = 40/374 (10%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA QV                          
Sbjct: 154 VHINHQPFLERGDG----PICLVLAPTRELAQQV-------------------------- 183

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q    E   ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 184 QQVAAEYCVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 243

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP--SSTAETIEHCFVATYAQYSKKC 232
              RQTL++SAT   E+++++E+FL++   I +     S+    ++   V    +  +K 
Sbjct: 244 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 303

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK
Sbjct: 304 IRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 362

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     
Sbjct: 363 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 422

Query: 353 DIKHI-DAIEKLIE 365
           +IK + D I  L E
Sbjct: 423 NIKQVSDLISVLRE 436


>gi|195154715|ref|XP_002018267.1| GL17616 [Drosophila persimilis]
 gi|194114063|gb|EDW36106.1| GL17616 [Drosophila persimilis]
          Length = 527

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 147/447 (32%), Positives = 230/447 (51%), Gaps = 26/447 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +V  +   G    TPIQ   IP +L   D  G AQTG+GKT +F LP   I
Sbjct: 9   FQSLGLRPWMVKQLTKLGLKGATPIQQNCIPAILSGKDCIGAAQTGSGKTFAFALP---I 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+          L+L PT ELA Q+++ F   G+   + V ++ GG     +++KL + 
Sbjct: 66  LERLSEEPVSHFALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQR 125

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++  PGR+ DH         +N++ LV+DEADRML+  F   +  I   +P TRQ L
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPSTRQNL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQLL 239
            FSATM D   K S  F  +   IE +  S  +T +T++  ++   A Y +   L++ L 
Sbjct: 186 FFSATMKD-FMKESSIFPISKDCIEWSQDSNVATVDTLDQRYLLC-ADYDRDMVLIESLR 243

Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + ++  +N   +IF N KK    L  +L+        +HG + Q+ R+  LS FK   I+
Sbjct: 244 KYREENENSNVMIFTNTKKYCQLLSMTLKSMDIDNVCLHGFMRQKERVAALSRFKSNHIR 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKH 356
            ++A+D+A+RGLDIP V  V N  +P   + YIHR+GRT RAGR G + ++     D++ 
Sbjct: 304 TLIATDVASRGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLEL 363

Query: 357 IDAIE-----KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           + AIE     KL E  +D            +E+I   Q N  R+ + +   +  FD R +
Sbjct: 364 LGAIETEINTKLTEHPID---------QRMVERI-FMQVNVTRRESEMQLDNNDFDERAQ 413

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQEN 438
           NY  +   +  K+ +++  L +  Q++
Sbjct: 414 NYRRKTWIMEGKDPDEMEALYRKKQKD 440


>gi|300176667|emb|CBK24332.2| unnamed protein product [Blastocystis hominis]
          Length = 408

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 121/368 (32%), Positives = 197/368 (53%), Gaps = 9/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF   GL  +++  + + G+ KP+P+Q +TIP +L   D+   ++ GTGKT ++V+P + 
Sbjct: 35  DFEKYGLKEEIMSVLCEKGWEKPSPVQSQTIPSILSGKDILARSKNGTGKTGAYVIPCMN 94

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    + R+ + LIL P RELA Q +    ++GK   +      GG        +L R
Sbjct: 95  QID---PKERVIQVLILVPARELALQTSRVVREFGKALKVDSMCCFGGQRLADDLYRLRR 151

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  VL+ T  RILD   RG   +++ + LV+DEAD+ML   F   ++++ + +P   QTL
Sbjct: 152 GVHVLVGTAARILDITRRGHCDLSHCKYLVLDEADKMLSDNFRQVVEDLIAFLPAEHQTL 211

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L SAT    ++  +  ++  P  + +NT +  T + I   +V  Y +  +K   L  L  
Sbjct: 212 LLSATFPSTVRSFAAEYMHEP--VMINTMNELTLKGITQYYV--YLEERQKVNALHTLF- 266

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   +   G+S   IH  ++Q  R K+  NF +G  + +V
Sbjct: 267 SKLEVNQSIIFCNSVARVELLAKKIIDLGYSCYYIHSRMEQDDRNKVFHNFSQGAARHLV 326

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARGL++  V  V NFD+P  +E Y+HRIGR+GR G  G A   +  +D +    I
Sbjct: 327 CTDLLARGLNVTTVNVVINFDLPQSSETYLHRIGRSGRYGHLGLAVNFITDKDKEVFFTI 386

Query: 361 EKLIEKKV 368
           E+ ++ +V
Sbjct: 387 EQELDIEV 394


>gi|294954212|ref|XP_002788055.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
 gi|239903270|gb|EER19851.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
          Length = 731

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 129/362 (35%), Positives = 196/362 (54%), Gaps = 23/362 (6%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--ILEKGRARVR- 71
           A+  A + KPTPIQ   IP  L   DV  IA TG+GKT ++++P++   I  K  A +  
Sbjct: 208 ALKHAKFEKPTPIQCVAIPAALSGRDVLAIADTGSGKTLAYLMPLIMHIIYHKEHADLAD 267

Query: 72  ----------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                      P  L+L PTRELA Q+     K GK   +T   L GG+    Q K L +
Sbjct: 268 RPAPTKDHPACPFALVLCPTRELAVQIEKTIYKLGKYIGITSTTLAGGLSKYEQFKDLRK 327

Query: 122 GA-DVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           G  D+++  PGR +D     G  L  +   +V+DEADRML+MGF   ++++   V   RQ
Sbjct: 328 GTCDIVVGNPGRCIDMVKEHGMSLTGDTAWVVLDEADRMLNMGFENQVRSLVQRVRPDRQ 387

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSST---AETIEHCFVATYAQYSKKCALLQ 236
           T+LFSATM  ++++++   +Q+P R+ V   ++T   A+ +    V    +  K   L +
Sbjct: 388 TMLFSATMPPKIERLARYIMQDPVRLFVGASATTGGAAQAVTQDVVVVEEKDDKFNWLSE 447

Query: 237 QLLQ----SQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNF 291
            L      +Q+     +IF NQK     L  ++ E       A+HG+ DQ  RMKI+++F
Sbjct: 448 NLPHILDDAQEEDGQVLIFVNQKSGASELAVAIREFMSLPCEALHGDSDQNDRMKIMADF 507

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +    +++VA+D+A+RGLDIP V  V  +D+ N    + HR+GRTGRAG  G A TL+ +
Sbjct: 508 RSRKTKVLVATDVASRGLDIPAVKEVICYDMSNTLTTHTHRLGRTGRAGHTGHATTLLVR 567

Query: 352 ED 353
           +D
Sbjct: 568 KD 569


>gi|170095563|ref|XP_001879002.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164646306|gb|EDR10552.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 654

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 122/353 (34%), Positives = 195/353 (55%), Gaps = 8/353 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL +S      +  A ++  T IQ K++P+ L+  DV G AQTG+GKT +F++P+L I
Sbjct: 3   FSDLPISDATKRGLKKAFFMDMTDIQTKSLPISLKGKDVLGAAQTGSGKTLAFLVPVLEI 62

Query: 63  LEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         LI+ PTRELA Q+ D     G  ++ +  L+IGG   + +  +L R
Sbjct: 63  LYRRKWGAADGLGALIISPTRELAVQIFDVLRSIGGYHSFSAGLVIGGKNLKDERDRLSR 122

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+ TPGR+L H ++      +N+++LV+DEADR+LDMGF   +  + S +P +RQT
Sbjct: 123 -MNILVATPGRLLQHMDQTVGFDADNLQVLVLDEADRILDMGFQKTLAALLSHLPKSRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQQL 238
           LLFSAT T  +  ++   L++P  + +N  SS+  T+       Y   +  KK  +L   
Sbjct: 182 LLFSATQTQSVSDLARLSLKDPVYVGINVASSSTSTMPQNLEQHYVICELDKKLDVLWSF 241

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ--GFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +++    K  I+F +  K V  +  +  K   G  +  +HG   Q +R+ + + F   + 
Sbjct: 242 IKTHLQSKI-IVFMSSCKQVRFVFETFCKMHPGVPLLHLHGKQKQSARLTMYTKFSSISH 300

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            ++ A+D+AARGLD P V  V   D P  A+ YIHR+GRT R    GKA   +
Sbjct: 301 AVLFATDIAARGLDFPSVDWVLQMDAPEDADTYIHRVGRTARYESKGKALLFL 353


>gi|170590083|ref|XP_001899802.1| DEAD/DEAH box helicase family protein [Brugia malayi]
 gi|158592721|gb|EDP31318.1| DEAD/DEAH box helicase family protein [Brugia malayi]
          Length = 782

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 112/354 (31%), Positives = 195/354 (55%), Gaps = 7/354 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +GL   +   +   G+ +PTPIQ K IP+++   D+  +++TG+GKTA+FV+P   IL+K
Sbjct: 36  IGLDHTLFKGIQKKGFRQPTPIQRKAIPIIIDGKDIVAMSRTGSGKTAAFVIP---ILQK 92

Query: 66  GRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
            + R ++  R LI+EPTRELA Q     ++ G+   L  A+L+GG   E Q + +    D
Sbjct: 93  LKVRDMKGIRALIIEPTRELAMQTFTVVKELGRFTGLRCAVLVGGDRIEEQFQTVHEKPD 152

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           ++I TPGR+L         ++ ++++V DEADR+ +MGF   +  +   +P  RQTLLFS
Sbjct: 153 IVIATPGRLLHVIVEMDFRLSAVQVIVFDEADRLFEMGFAEQLHEVLKRLPENRQTLLFS 212

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT+   +   S+  L +P  + ++     ++ +   F+  Y +   K A    L +    
Sbjct: 213 ATLPKSIIAFSKAGLSDPVLVRLDLAEKISDKLSMMFL--YCRTDDKLAAFLHLAREVVA 270

Query: 245 M-KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +  I+FC   K+V  L     K G     ++  +D  +R   +  F++    L++ +D
Sbjct: 271 ANEQTIVFCATMKHVEYLAAVAGKAGIDCVVLYSQLDSVARNINIQKFRKKECSLLIVTD 330

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +AARG+DIP +    N+  P++ + ++HR+GR  RAGR GKA +L   +++ ++
Sbjct: 331 IAARGVDIPLLDVAINYHFPSKPKLFVHRVGRVARAGRSGKAISLFGADEVPYV 384


>gi|157149988|ref|YP_001449893.1| ATP-dependent RNA helicase [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157074782|gb|ABV09465.1| ATP-dependent RNA helicase [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 447

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 193/371 (52%), Gaps = 19/371 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ T +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFTFKNYIQEALEDLKFVEATEVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKK 118
             L +    V++   +I  P+RELA Q+     +     +  + VA  +GG     Q  K
Sbjct: 61  QKLNEDEDHVQV---VITAPSRELATQIYQATRQIASFSDKEIRVANYVGGTDKTRQIDK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           LE     ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I S +P  
Sbjct: 118 LEFSQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIASSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-----AQYSKKC 232
            Q L+FSAT+  +LQ   + +L NP   ++ T +  ++TIE+  V+T      AQ  +  
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVMEQIKTKTVISDTIENWLVSTKGRDKNAQIYEIS 237

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            +LQ  L         +IF N K     L   L  QG  V  IHG+I  R R +I++  K
Sbjct: 238 RILQPYL--------AMIFVNTKTRADELHSYLLAQGLKVAKIHGDIAPRERKRIMNQVK 289

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
               + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    
Sbjct: 290 NLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPS 349

Query: 353 DIKHIDAIEKL 363
           D   I  +EKL
Sbjct: 350 DDSDIRELEKL 360


>gi|77408189|ref|ZP_00784934.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae COH1]
 gi|77173204|gb|EAO76328.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae COH1]
          Length = 447

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 128/367 (34%), Positives = 194/367 (52%), Gaps = 11/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D    P +  A+ +  +V PT +Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDFNFKPYIQRALDELKFVAPTDVQAKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKK 118
             L++    V++   +I  P+RELA Q+    ++  ++    + V   +GG     Q +K
Sbjct: 61  EKLDESSDDVQV---VITAPSRELATQIYQATKQIAEHSEQEIRVVNYVGGTDKLRQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+     ++I TPGRI D    G L+++     V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LKVSQPHIVIGTPGRIYDLVKSGDLVIHKAHTFVVDEADMTLDMGFLDTVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL-LQ 236
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  ++T  +      L L 
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEKIKTATVIADTIDNWLLSTKGRDKNAQILELS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L+Q    M    IF N K+    L   L   G  V  IHG I  R R +I++  K    
Sbjct: 238 KLMQPYLAM----IFVNTKERADELHSYLSSNGLKVAKIHGGIAPRERKRIMNQVKNLEF 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   
Sbjct: 294 EYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSD 353

Query: 357 IDAIEKL 363
           I  +EKL
Sbjct: 354 IRELEKL 360


>gi|326473030|gb|EGD97039.1| ATP-dependent RNA helicase DBP4 [Trichophyton tonsurans CBS 112818]
          Length = 703

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 129/392 (32%), Positives = 208/392 (53%), Gaps = 26/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DL LS      +  + + + T IQ + IP  LQ  D+ G A+TG+GKT +F++P+L  
Sbjct: 52  FTDLPLSEPTRLGLSASHFKELTDIQSRAIPHALQGRDILGAAKTGSGKTLAFLVPVLEN 111

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  K          LI+ PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L R
Sbjct: 112 LFRKQWTEYDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLQEEQERLGR 171

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++      +NI++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 172 -MNILVCTPGRMLQHMDQTAAFDTDNIQMLVLDEADRIMDMGFQNTVDAIVEHLPKERQT 230

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYSKKCALLQQL 238
           +LFSAT T ++  ++   LQ+P+ I V+  +S+A   T++  +V T      K   L   
Sbjct: 231 MLFSATQTKKVSDLARLSLQDPEYISVHQAASSATPSTLQQHYVVT--PLPDKLDTLWSF 288

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ---GFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++S  ++K+ +I        V   +   +Q   G  +  +HG   Q +R+ I   F    
Sbjct: 289 IRS--SLKSKVIVFFSSSKEVRFVYEAFRQMQPGIPLLHLHGRQKQGARLDITHKFSASK 346

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
              + A+D+ ARGLD P V  V   D P  ++ YIHR+GRT R  R G+A   +  +  +
Sbjct: 347 NSCLFATDVVARGLDFPAVDWVIQLDCPEDSDTYIHRVGRTARYERDGRAVLFL--DPSE 404

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
            I  + +L +KK+            P+EKI+I
Sbjct: 405 EIGMLSRLEQKKI------------PIEKINI 424


>gi|310831360|ref|YP_003970003.1| putative superfamily II helicase/eIF-4AIII [Cafeteria roenbergensis
           virus BV-PW1]
 gi|309386544|gb|ADO67404.1| putative superfamily II helicase/eIF-4AIII [Cafeteria roenbergensis
           virus BV-PW1]
          Length = 384

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 200/365 (54%), Gaps = 10/365 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LGLS  ++  V   G++ P+ IQ K I +++ + D    +Q+GTGKTA+++L  L 
Sbjct: 9   NFESLGLSKNILKGVYSYGFINPSDIQQKGIGVIISKKDCILQSQSGTGKTATYLLGTLH 68

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L++   + +  +T+I+ PTRELA QV D  +K  K  NL + L +GG       K+   
Sbjct: 69  NLDE---QTKGIQTVIITPTRELAEQVYDVAKKLAKYTNLKIVLCVGGTNI-GSFKREAV 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + +LI T GRI          +  ++ L +DEAD +L+  +   + ++    P   Q  
Sbjct: 125 QSHLLIGTIGRIYHMMEENVFSLEQLKQLTLDEADSLLEKKYGNKVYDLIKQTPQKCQKC 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--QLL 239
             SAT+   L+++S++ L NP+ + +       + I++ ++ T  +  K   LL   Q++
Sbjct: 185 FLSATVNRNLREISKSVLDNPELVLLKKEDIQVKAIKNFYLDTVEEEYKFDTLLDLYQII 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +  TM    IFCN    +  + + LE++GF    IHG ++Q  R KI+  F+EG  +++
Sbjct: 245 STSHTM----IFCNSINKIEFVKNKLEEEGFPTTTIHGGLEQEERSKIVDEFREGKTRIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+DIP+V  V N+D+P   E +IHRIGR+GR G+ G + T +  ED K    
Sbjct: 301 LTTDLLARGIDIPEVKLVINYDLPKNHETFIHRIGRSGRFGKKGVSITFIKMEDFKDKKN 360

Query: 360 IEKLI 364
            E LI
Sbjct: 361 FESLI 365


>gi|295672568|ref|XP_002796830.1| ATP-dependent RNA helicase eIF4A [Paracoccidioides brasiliensis
           Pb01]
 gi|226282202|gb|EEH37768.1| ATP-dependent RNA helicase eIF4A [Paracoccidioides brasiliensis
           Pb01]
          Length = 398

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 129/376 (34%), Positives = 211/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L  +++  V   G+ +P+ IQ + I  V++  DV   AQ+GTGKTA+F    ++ 
Sbjct: 27  FDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATF---SISA 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    ++  + LIL PTRELA Q+       G   ++     IGGI      K L+ G
Sbjct: 84  LQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSIECHACIGGISVRDDMKALQEG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I   +P + Q +L
Sbjct: 144 PQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSHGFTEQIYDIFQFLPQSTQVVL 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 204 LSATMPQDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A+
Sbjct: 263 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIAT 321

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 322 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 381

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 382 FYSTQIEEMPMNVADL 397


>gi|326433402|gb|EGD78972.1| hypothetical protein PTSG_01945 [Salpingoeca sp. ATCC 50818]
          Length = 845

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 120/363 (33%), Positives = 198/363 (54%), Gaps = 7/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  +S +    + DAG++KPT IQ  T+   L   DV G A+TG+GKT +F++P+L  
Sbjct: 57  FTEFPISNRTKKGLADAGFIKPTRIQKATLKHALAGRDVLGAAKTGSGKTLAFLIPVLEK 116

Query: 63  LEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + R +R      +++ PTRELA Q  +   +    + ++ AL IGG   + + K +  
Sbjct: 117 LNRERFSRDLGIGAVVVSPTRELAQQTYNTLVQVATGHEMSCALFIGGNNVKIE-KTMAA 175

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             +++ICTPGR++ H +       +N+++LV+DEADR+LD GF   +  I S +P  RQT
Sbjct: 176 TRNIIICTPGRLVQHMDETPNFGFDNLQVLVLDEADRLLDSGFKEEVDRIVSEMPPHRQT 235

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT T E+ +++   L NP  I V+   ++T   ++ C+V       +K  LL   +
Sbjct: 236 LLFSATQTAEVDELARLSLHNPVFINVHKDQAATPARLKQCYVEV--PLHEKINLLYSFI 293

Query: 240 QSQDTMKNGIIF-CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +S    K  +   C ++ N++       K G S+  + G     +R + L  F +    +
Sbjct: 294 ESHKKHKTMVFLACRKQVNLLYKIFCRRKPGVSIFELVGRRSLHTRQETLRKFSKAKAAV 353

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +D+AARGLDIP+V  V   D P   + YIHR+GRT R G++G A   +   ++  + 
Sbjct: 354 LLTTDVAARGLDIPNVNWVLQVDCPESVDTYIHRVGRTARFGKNGNAMLFLLPSELNMVK 413

Query: 359 AIE 361
            +E
Sbjct: 414 QLE 416


>gi|195429198|ref|XP_002062651.1| GK17652 [Drosophila willistoni]
 gi|194158736|gb|EDW73637.1| GK17652 [Drosophila willistoni]
          Length = 782

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 112/354 (31%), Positives = 195/354 (55%), Gaps = 6/354 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +GL+  +V  +   GY  PTPIQ KTIP++L+  DV  +A+TG+GKTA F++P+   L++
Sbjct: 1   MGLNQDLVKGITKRGYKVPTPIQRKTIPMILEGRDVVAMAKTGSGKTACFLIPLFERLQR 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
            R   +  R LIL PTRELA Q     ++ G+   L   L++GG   ++Q   +    DV
Sbjct: 61  -REPTKGARALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHTCPDV 119

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           ++ TPGR L       L +N+IE +V DEADR+ +MGF   +      +P +RQ ++FSA
Sbjct: 120 IVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQMVMFSA 179

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQQLLQSQD 243
           T+   L   +   L +P  I ++  S   +++   F+      +Y+    LL+ ++  + 
Sbjct: 180 TLPKLLVDFARAGLSDPVLIRLDVESKLPDSLALKFLYCRPDDRYTSLIVLLKYVIPEKS 239

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
                ++F   + +V  +   L +   S  +++ ++D  +R    + F    + +++ +D
Sbjct: 240 ---QTVVFAGTQHHVELISFILTQSNISNTSVYSSLDPAARKINTAKFVSKKVSVLIVTD 296

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +AARG+DIP + +V N   P + + ++HR+GR  RAGR G AF++ + +D  H+
Sbjct: 297 VAARGIDIPSLDYVINVHFPGKPKLFVHRVGRCARAGRSGTAFSIFSTDDTAHL 350


>gi|145233847|ref|XP_001400296.1| ATP-dependent RNA helicase eIF4A [Aspergillus niger CBS 513.88]
 gi|134034144|sp|A2QEN5|IF4A_ASPNC RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|134057232|emb|CAK44496.1| unnamed protein product [Aspergillus niger]
          Length = 398

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 129/376 (34%), Positives = 208/376 (55%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P+++  V   G+ +P+ IQ + I  ++  HDV   AQ+GTGKTA+F    ++ 
Sbjct: 27  FDSMDLKPELLRGVYAYGFERPSAIQQRAIKPIIAGHDVIAQAQSGTGKTATF---SISA 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    ++  + LI+ PTRELA Q+       G   N+     IGG         L  G
Sbjct: 84  LQKIDQELKACQALIVAPTRELAQQIQKVVVAIGDFMNIECHACIGGTNVRDDMNALRAG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGRI D   R  L  + +++ ++DEAD ML  GF   I +I  L+P + Q  L
Sbjct: 144 PQVVVGTPGRIHDMIERRVLKTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQSTQVTL 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 204 LSATMPQDVLEVTTKFMRDPIRILVKKQELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A+
Sbjct: 263 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQGQRDVIMKEFRSGSSRVLIAT 321

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 322 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 381

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 382 FYSTQIEEMPMNVADL 397


>gi|302679352|ref|XP_003029358.1| hypothetical protein SCHCODRAFT_257992 [Schizophyllum commune H4-8]
 gi|300103048|gb|EFI94455.1| hypothetical protein SCHCODRAFT_257992 [Schizophyllum commune H4-8]
          Length = 924

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 125/407 (30%), Positives = 208/407 (51%), Gaps = 52/407 (12%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPML 60
           F  +GL P ++ ++   G+  PTPIQ  +IP +L     D+ G+A+TG+GKT  +++P++
Sbjct: 97  FQSMGLHPSLLRSLTLQGFRIPTPIQRLSIPALLANPPRDLVGMARTGSGKTLGYMIPLV 156

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVA--------------------DNFEKYGKNYN 100
             L    +     R LIL PTRELA Q+                        E+  K  +
Sbjct: 157 QRLGGRHSTTFGARALILIPTRELALQILRVGKELARGWHSCQGDHAGDSKTEETSKGQS 216

Query: 101 LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160
           L   L++GG   + Q + +    DV+I TPGR+L       L + +++ +V DEADR+ +
Sbjct: 217 LRWGLIVGGEGMDEQFEMMTNNPDVIIATPGRLLHLIVEMNLDLKSVQYVVFDEADRLFE 276

Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
           MGF   +  I   +P +RQTLLFSAT+   L + ++  LQ+PK I ++  S  +  ++  
Sbjct: 277 MGFETALNEILHRLPTSRQTLLFSATLPKSLVEFAKAGLQDPKLIRLDAESKISSDLKMA 336

Query: 221 FVATYAQYSKKC--ALLQQLL-------------------QSQDTMKNG---------II 250
           F +  A   + C   LL+ ++                   + +   K G         +I
Sbjct: 337 FFSVKAAEKEACLLELLRDVIKVPLGKVNAEEDEEGATKSKGKGKAKRGEIFTAPHQTLI 396

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F   K +V  L   L   G++V  I+G++DQ +R + +  F+ G   ++V +D+AARG+D
Sbjct: 397 FAATKHHVEYLTTLLSTAGYAVSHIYGSLDQTARSQQMERFRRGITTILVVTDVAARGID 456

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           IP + +V N+D P  A  ++HR+GRT RAGR G A++ V   ++ ++
Sbjct: 457 IPVLENVVNYDFPQGARVFVHRVGRTARAGRQGWAWSFVTNTELPYL 503


>gi|167521868|ref|XP_001745272.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776230|gb|EDQ89850.1| predicted protein [Monosiga brevicollis MX1]
          Length = 552

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 133/378 (35%), Positives = 208/378 (55%), Gaps = 23/378 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L LS      +  AGY +PT IQ   +   L+  DV   A+TG+GKT +F++P+L  
Sbjct: 39  FAQLPLSSATQRGLKKAGYTRPTEIQRDALIKALKGQDVLAAAKTGSGKTLAFLIPVL-- 96

Query: 63  LEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             +G  R R  +      LI+ PTRELA Q  +   K G  ++++  L++GG   E + K
Sbjct: 97  --EGLFRQRWSKPDGVGGLIISPTRELALQTYEVLTKIGCFHDMSAGLVVGGTTLE-REK 153

Query: 118 KLERGADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +    +++ICTPGR+L H +       +N+++LV+DEADR+LDMGF   +  I   +P 
Sbjct: 154 AVISNTNIIICTPGRLLQHMDETFGFSCDNLQMLVLDEADRILDMGFAKTLNAILENLPK 213

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ--YSKKCAL 234
            RQT+LFSAT T  ++ ++   L+ P+ I V+    TA    H  V  Y     ++K  +
Sbjct: 214 QRQTMLFSATQTKSVKDLARLSLKMPEFISVHEQDKTA--TPHKLVQAYMTVPLNQKLDV 271

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ--GFSVCAIHGNIDQRSRMKILSNFK 292
           L   ++S   +K  ++F +  K V  +  +L +   G  + A++G   Q  R+ I ++F 
Sbjct: 272 LFSFIRSHVNVKM-LVFVSSCKQVRFIYETLRRMRPGVPLLALYGKQKQAKRVAIYNDFS 330

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA-FTLVAK 351
           + T  +++A+D+AARGLD P V  VF  D P     YIHR+GRT R G+ GKA  TL+  
Sbjct: 331 KKTHAVLLATDIAARGLDFPSVDWVFQLDCPEDVATYIHRVGRTARYGKEGKALLTLLPS 390

Query: 352 EDIKHIDAIEKLIEKKVD 369
           E       +++L E+KV+
Sbjct: 391 ESA----MVQQLAERKVE 404


>gi|17136814|ref|NP_476927.1| DEAD box protein 45A [Drosophila melanogaster]
 gi|12643712|sp|Q07886|DDX49_DROME RecName: Full=Probable ATP-dependent RNA helicase Dbp45A;
           Short=DEAD box protein 45A
 gi|7303950|gb|AAF58994.1| DEAD box protein 45A [Drosophila melanogaster]
 gi|16185764|gb|AAL13957.1| LD47509p [Drosophila melanogaster]
          Length = 521

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 147/442 (33%), Positives = 230/442 (52%), Gaps = 16/442 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +V  +   G    TPIQ K IP +L   D  G A+TG+GKT +F LP   I
Sbjct: 9   FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALP---I 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+          L+L PT ELA Q+++ F   G+   + V ++ GG     +++KL + 
Sbjct: 66  LERLSEEPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQR 125

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++  PGR+ DH         +N++ LV+DEADRML+  F   +  I   +P TRQ L
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLPKTRQNL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQLL 239
            FSATM D + K S  F       E +  S  +T ET++  ++   A Y +   L++ L 
Sbjct: 186 FFSATMKDFI-KESSIFPIASDCFEWSQDSDVATVETLDQRYLLC-ADYDRDMVLIEALR 243

Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + ++  +N   +IF N KK    L  +L+        +HG + Q+ R+  LS FK   I+
Sbjct: 244 KYREENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIR 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKH 356
            ++A+D+AARGLDIP V  V N  +P   + YIHR+GRT RAGR G + ++     D++ 
Sbjct: 304 TLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLEL 363

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           + AIE+ I  K+     D       +E+I   Q N  R+ + +   +  FD R +NY  +
Sbjct: 364 LAAIEEEINTKLTEHPIDQRM----VERI-FMQVNVTRRESEMQLDNNDFDERAQNYRRK 418

Query: 417 KSHIPLKESEKISKLQQDIQEN 438
              +  K+ +++  L +  Q++
Sbjct: 419 TWIMEGKDPDQMEALYRKKQKD 440


>gi|58039896|ref|YP_191860.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58002310|gb|AAW61204.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 603

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 117/374 (31%), Positives = 198/374 (52%), Gaps = 10/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D    P +  A+   GY + TP+Q   +   L   D+   AQTG+GKT +F L + 
Sbjct: 1   MPFPDT--HPALKRALEARGYEQLTPVQEAVLQPGLDERDLLVSAQTGSGKTVAFGLAIA 58

Query: 61  TILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L     R+     P  L++ PTRELA QV    +         +A  IGG    ++ +
Sbjct: 59  PTLLGDADRLPPSPQPMALVIAPTRELALQVQSELKWLYAETGARIASCIGGTDARSEAR 118

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RGA +++ TPGR+ DH +RG L ++ +  +V+DEAD MLDMGF   ++ +    P  
Sbjct: 119 ELNRGAHIVVGTPGRLCDHLSRGSLDLSALRCVVLDEADEMLDMGFREELEQLLDAAPAE 178

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIE-VNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           R+TLLFSAT+  E+  ++  + +N +RI+ V+     ++    C +    +  +    + 
Sbjct: 179 RRTLLFSATIAREIASLARRYQKNAERIDTVSGAKQHSDITYRCVITQPQEIERSLVNVL 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +  +S   M    +FCN +  V  +  +L ++GF+  AI G + Q  R + + + + G  
Sbjct: 239 RFYESPTAM----VFCNTRMMVNQVQAALLERGFASVAISGEMGQNERSRAIESLRSGQA 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++ VA+D+AARG+D+P +  V +  +P  AE  +HR GRTGRAGR G +  +V     + 
Sbjct: 295 RVCVATDVAARGIDVPALSLVIHASIPTAAETLLHRSGRTGRAGRKGTSVLMVPLNQRRR 354

Query: 357 IDAIEKLIEKKVDW 370
            + + ++ + + +W
Sbjct: 355 AERLLQMAKIQAEW 368


>gi|332006183|gb|AED93566.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
          Length = 655

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 118/336 (35%), Positives = 192/336 (57%), Gaps = 14/336 (4%)

Query: 36  LQRHDVCGIAQTGTGKTASFVLPMLTIL--EKG-----RARVRMPRTLILEPTRELAAQV 88
           LQ  D+   A+TGTGKT +F +P++  L  E G     R   R+P+ L+L PTRELA QV
Sbjct: 44  LQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQV 103

Query: 89  ADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIE 148
               ++      L+   + GG+ +  Q   L RG DV++ TPGRI+D      L +  +E
Sbjct: 104 EKEIKESAPY--LSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVE 161

Query: 149 ILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV- 207
            LV+DEAD+ML +GF   +++I   +P  RQ++LFSATM   ++K++  +L NP  I++ 
Sbjct: 162 YLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLV 221

Query: 208 -NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLE 266
            +     AE I+   +AT +  + K  +L  L+         I+F   K++   +  +L 
Sbjct: 222 GDQDEKLAEGIKLYAIATTS--TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALS 279

Query: 267 KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
               +  A+HG+I Q  R + L+ F++G   ++VA+D+A+RGLDIP+V  V ++++PN  
Sbjct: 280 NS-IATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDP 338

Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           E ++HR GRTGRAG+ G A  +      + + ++E+
Sbjct: 339 ETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLER 374


>gi|329941301|ref|ZP_08290580.1| DEAD-box RNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329299832|gb|EGG43731.1| DEAD-box RNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 503

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 115/348 (33%), Positives = 184/348 (52%), Gaps = 5/348 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA L +   ++  +   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L 
Sbjct: 75  EFAALDMPAALLAELGRNGLTVPFPIQGATLPNSLAGRDVLGRGRTGSGKTLAFGLALLA 134

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                RA  R P  L+L PTRELA QV +    Y +   L +A ++GG+    Q + L  
Sbjct: 135 RTAGRRAEPRQPLGLVLVPTRELAQQVTEALTPYARAVRLRLATVVGGVSIGGQMRALRG 194

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA++++ TPGR+ D  +RG  +++ + + V+DEAD+M DMGF+P +  +   V    Q +
Sbjct: 195 GAEIVVATPGRLKDLIDRGGCVLDQVSVTVLDEADQMADMGFMPQVTALLDQVDAQGQRM 254

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +  +   +L +P    V+  +    T+EH  +  +   + K     ++   
Sbjct: 255 LFSATLDRNVDALVRRYLHDPVVHSVDPSAGAVTTMEHHVL--HVHGADKHEATTRIAAR 312

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   I+F + K  V  L   L   G    A+HG   Q  R + L+ F+ G + ++VA
Sbjct: 313 EGRV---IMFLDTKHAVDRLTAHLLGSGVRAAALHGGKSQPQRTRTLAQFRTGHVGVLVA 369

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +++AARG+ +  +  V N D P+  ++Y+HR GRT RAG  G   TLV
Sbjct: 370 TNVAARGIHVDSLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTLV 417


>gi|226326727|ref|ZP_03802245.1| hypothetical protein PROPEN_00585 [Proteus penneri ATCC 35198]
 gi|225204948|gb|EEG87302.1| hypothetical protein PROPEN_00585 [Proteus penneri ATCC 35198]
          Length = 345

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 121/349 (34%), Positives = 202/349 (57%), Gaps = 12/349 (3%)

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           + PTRELA Q+  + ++  ++  + + L  GG  ++ Q K L  G D++I T GR++D+ 
Sbjct: 1   MAPTRELAVQIYSDAKELAQSTGIKMGLAYGGDGYDEQLKVLSNGVDIVIGTTGRLIDYV 60

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQTLLFSATMTDELQKVS 195
            +G + +N I+++V+DEADRM D+GFI  I+ I   +P    R  +LFSAT++  +++++
Sbjct: 61  KQGHINLNAIQVVVLDEADRMYDLGFIKDIRWIFRRMPVAAERMNMLFSATLSYRVRELA 120

Query: 196 ENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
              + NP+ +EV     T  +I E  F   Y    +K  LLQ L++ ++     IIF N 
Sbjct: 121 FEQMNNPEYVEVEPEQKTGFSIKEELF---YPSNEEKMRLLQTLIE-EEWPDRCIIFANT 176

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K    ++   L   G  V  + G++ Q+ R++IL +F +G + ++VA+D+AARGL IP V
Sbjct: 177 KHRCDDIWAHLVADGHRVGLLTGDVPQKKRLRILEDFTQGNLDILVATDVAARGLHIPSV 236

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK--VDWLN 372
            HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++ AIE  I+    V   N
Sbjct: 237 THVFNYDLPDDCEDYVHRIGRTGRAGNSGNSISLACEEYALNLPAIETYIQHAIPVSKYN 296

Query: 373 GD--LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
            D  L+ L  P ++    +    R+NN   + + G + ++ N + + SH
Sbjct: 297 SDALLTDLPEP-KRRHRPRQGQPRRNNASVRNNRGNNTQRNNRNKRPSH 344


>gi|86357796|ref|YP_469688.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
 gi|86281898|gb|ABC90961.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
          Length = 651

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 119/350 (34%), Positives = 190/350 (54%), Gaps = 14/350 (4%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           G+ P +  A+   GY + TP+Q   +   L   D    AQTG+GKT +F L +   L  G
Sbjct: 6   GVVPAIAKALQKRGYAELTPVQQAMLDPALAASDALVSAQTGSGKTVAFGLALAPTLLDG 65

Query: 67  RAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
             R      P  L++ PTRELA QV    E   +     +A  +GG+   ++ + LERGA
Sbjct: 66  HERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRALERGA 125

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            +++ TPGR+ DH  R  L M++++  V+DEAD MLD+GF   ++ I    P  R+TL+F
Sbjct: 126 HIVVGTPGRLCDHIRRRALDMSDLKAAVLDEADEMLDLGFREDLEFILDSAPDERRTLMF 185

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA----TYAQYSKKCALLQQLL 239
           SAT+   + K+++++ ++  RI     S+ AE  +H  +       A   ++ A++  L 
Sbjct: 186 SATVPAAIAKLAKSYQRDAVRI-----STAAEEKQHVDIEYRALMVAPSDRENAIINVLR 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             + T  N I+FC+ +  V +L      + FSV A+ G + Q  R   L   ++G  ++ 
Sbjct: 241 YYEAT--NAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERSHALQAMRDGRARVC 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +A+D+AARG+D+P +  V + D+P   E  +HR GRTGRAGR G +  +V
Sbjct: 299 IATDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIV 348


>gi|119493424|ref|XP_001263902.1| ATP dependent RNA helicase (Dhh1), putative [Neosartorya fischeri
           NRRL 181]
 gi|142981160|sp|A1D8G1|DHH1_NEOFI RecName: Full=ATP-dependent RNA helicase dhh1
 gi|119412062|gb|EAW22005.1| ATP dependent RNA helicase (Dhh1), putative [Neosartorya fischeri
           NRRL 181]
          Length = 507

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 130/418 (31%), Positives = 212/418 (50%), Gaps = 12/418 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P  
Sbjct: 47  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIP-- 104

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE+   +    + LIL PTRELA Q +   +  GK+  + V +  GG        +L 
Sbjct: 105 -TLERINPKSTKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRLN 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 164 DAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  ++NP  I +     T   I   +   + +  +K   L  L  
Sbjct: 224 MLFSATFPLIVKSFKDKHMRNPYEINL-MDELTLRGITQYYA--FVEEKQKVHCLNTLF- 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q+ R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKI 399

Query: 361 EKLIEKKVDWLNGDLSSL-----NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           E+ +  ++  +  ++        +P      I+  +  R+    P  ++  DRR  N+
Sbjct: 400 EQELGTEIQPIPQNIDKKLYVYDSPETIPRPISNPSQPRQITNTPANTSTADRRHHNH 457


>gi|153822641|ref|ZP_01975308.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
 gi|126519840|gb|EAZ77063.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
          Length = 217

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 104/217 (47%), Positives = 145/217 (66%), Gaps = 1/217 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG + R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I  I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
            LLFSAT + E++++++  + NP  I V+  +STA T
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTART 217


>gi|83951704|ref|ZP_00960436.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius nubinhibens ISM]
 gi|83836710|gb|EAP76007.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius nubinhibens ISM]
          Length = 786

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 205/368 (55%), Gaps = 6/368 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILE 64
           L + P +  A+   GY   TP+Q       L   D+   AQTG+GKT +F L M  T+L+
Sbjct: 23  LPMIPPLSNALAARGYDSLTPVQEAMADPDLIGSDLLVSAQTGSGKTVAFGLAMAPTLLD 82

Query: 65  KGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +         P  L++ PTRELA QV +            +A  +GG+    + + LERG
Sbjct: 83  EAEVFGPAAAPLALVVAPTRELAFQVMNELRWLYAETGARIASCVGGMDMRDERRTLERG 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A +++ TPGR+ DH +RG L M+++ ++V+DEAD MLD+GF   ++ +    P  R+TLL
Sbjct: 143 AHIVVGTPGRLRDHISRGSLDMDDLRVVVLDEADEMLDLGFREDLEFMLEAAPENRRTLL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + +++  F ++ +RI  NT SST +  +  + A    + +  A +  LL+  
Sbjct: 203 FSATVPPAIARLAGQFQRDARRI--NTVSSTEQHADIAYQALRVAHGEGEAAIFNLLRFH 260

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D  +  I+F N +  V +L   L  +GF+V ++ G + Q  R   L   ++G  ++ VA+
Sbjct: 261 DA-EAAIVFANTRAAVNHLTTRLANRGFAVVSLSGELSQSERSHALQAMRDGRARICVAT 319

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+D+P++  V + D+P   E+ +HR GRTGRAGR G +  +VA  D+K  + I K
Sbjct: 320 DVAARGIDLPNLNLVIHADLPKNTESLMHRSGRTGRAGRKGVSALIVAPRDLKKAERILK 379

Query: 363 LIEKKVDW 370
             +   +W
Sbjct: 380 FAKITAEW 387


>gi|225677534|gb|EEH15818.1| ATP-dependent RNA helicase drs1 [Paracoccidioides brasiliensis
           Pb03]
          Length = 815

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 132/364 (36%), Positives = 191/364 (52%), Gaps = 12/364 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L  
Sbjct: 302 FQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILER 361

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++ 
Sbjct: 362 LLYRPRKVPTSRVAILMPTRELAVQCCNVATKLATYTDITFCQLVGGFSLREQENILKKR 421

Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR +DH  N     ++ +EILV+DEADRML+ GF   +  I + +P +RQT+
Sbjct: 422 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTM 481

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240
           LFSATMT+ + K+    L  P R+ V+    T  T+   FV     +  K+   L  L +
Sbjct: 482 LFSATMTNTIDKLIRVGLNRPVRLMVDAQKQTVGTLVQEFVRLRPGREDKRLGYLITLCK 541

Query: 241 S--QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +D +   IIF   KK    +       G     +HG++ Q      +++   GT+  
Sbjct: 542 TVYKDLV---IIFFRAKKEAHRVRIIFGLFGLKAAELHGSMSQEQASFAIAS---GTLTT 595

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
            +  +L   GLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + 
Sbjct: 596 DLGHELI--GLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAESDRKVVK 653

Query: 359 AIEK 362
           A  K
Sbjct: 654 AAVK 657


>gi|322373643|ref|ZP_08048179.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C150]
 gi|321278685|gb|EFX55754.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C150]
          Length = 447

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 128/368 (34%), Positives = 198/368 (53%), Gaps = 13/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ +  + +PTP+Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDFNFKTFIQEALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQN 116
             L  E G  +V     +I  P+RELA Q+    ++  K+    + V   +GG   + Q 
Sbjct: 61  EKLSPESGDVQV-----VITAPSRELATQIYQATKQIAKHSATEIRVVNYVGGTDKQRQI 115

Query: 117 KKLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           +KL+     ++I TPGRI D    G L ++     V+DEAD  +DMGF+  +  I + +P
Sbjct: 116 EKLKVAQPHIVIGTPGRIYDLIKSGDLAIHKAHTFVVDEADMTMDMGFLDTVDKIAASLP 175

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  V+T  + +K   +L
Sbjct: 176 KEVQILVFSATIPQKLQPFLKKYLTNPVMEQIKTSTVIADTIDNWLVSTKGR-NKNEQIL 234

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + L   Q  +   +IF N K+   +L   L   G  V  IHG I  R R +I++  K+  
Sbjct: 235 EMLKGMQPYL--AMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLD 292

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D  
Sbjct: 293 FEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDS 352

Query: 356 HIDAIEKL 363
            I  +EK+
Sbjct: 353 DIRELEKM 360


>gi|209549420|ref|YP_002281337.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535176|gb|ACI55111.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 659

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 120/350 (34%), Positives = 191/350 (54%), Gaps = 14/350 (4%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEK 65
           G+ P +  A+   GY + TP+Q   +   L   D    AQTG+GKT +F L +  T+LE 
Sbjct: 6   GVVPAIAKALQKRGYAELTPVQKAMLDPALAASDALVSAQTGSGKTVAFGLALAPTLLEG 65

Query: 66  GR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
           G        P  L++ PTRELA QV    E   +     +A  +GG+   ++ + LERGA
Sbjct: 66  GERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRSLERGA 125

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            +++ TPGR+ DH  R  L M+ ++  V+DEAD MLD+GF   ++ I    P  R+TL+F
Sbjct: 126 HIVVGTPGRLCDHIRRRALDMSELKAAVLDEADEMLDLGFREDLEFILDSAPDERRTLMF 185

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA----TYAQYSKKCALLQQLL 239
           SAT+   + K+++++ +N  RI     S+ AE  +H  +       A   ++ A++  L 
Sbjct: 186 SATVPAAIAKLAKSYQRNAVRI-----STAAEAKQHVDIEYRALMVAPSDRENAIINVLR 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             + T  N I+FC+ +  V +L      + FSV A+ G + Q  R   L   ++G  ++ 
Sbjct: 241 YYEAT--NAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERTHALQAMRDGRARVC 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +A+D+AARG+D+P +  V + D+P   +  +HR GRTGRAGR G +  +V
Sbjct: 299 IATDVAARGIDLPGLDLVIHADLPTNPDTLLHRSGRTGRAGRKGISAMIV 348


>gi|168059277|ref|XP_001781630.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666944|gb|EDQ53586.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1072

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 124/368 (33%), Positives = 192/368 (52%), Gaps = 42/368 (11%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT----- 61
           GL+ KV+  +  +G+ KP PIQ + +P+++   D  GIA+TG+GKT +FVLPML      
Sbjct: 484 GLNSKVLDVIKKSGFEKPMPIQTQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIMDQ 543

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++G      P  LI+ PTREL  Q+ ++  K+ K   LT   + GG     Q   L+
Sbjct: 544 PPLQQGDG----PIGLIMAPTRELVQQIYNDIRKFSKVVGLTCVPVYGGSGVAQQISDLK 599

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RG ++++CTPGR++D    + GK+  +  +  LV+DEADRM DMGF P I  I       
Sbjct: 600 RGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNTRPD 659

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT   +++ ++   L  P  I++   S     I                  + 
Sbjct: 660 RQTVLFSATFPRQVEVLARKVLTKPVEIQIGGRSVVNSDITQTVEVR----------PES 709

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               +     G  +  +K  ++   HS EK+                   +++FK     
Sbjct: 710 ERFLRLLELLGEWY--EKGKILVFVHSQEKES-----------------TITDFKTSVCN 750

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           LM+A+ +AARGLD+ ++  V N+DVPN  E+Y+HR+GRTGRAGR G A T ++ E+ ++ 
Sbjct: 751 LMIATSIAARGLDVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKGFAVTFISTEEERYA 810

Query: 358 DAIEKLIE 365
             + K +E
Sbjct: 811 PDLVKALE 818


>gi|297833724|ref|XP_002884744.1| hypothetical protein ARALYDRAFT_317764 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330584|gb|EFH61003.1| hypothetical protein ARALYDRAFT_317764 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 930

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 193/368 (52%), Gaps = 44/368 (11%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT----- 61
           GL+ K++  +    YVKP PIQ + +P+++   D  GIA TG+GKT +FVLPML      
Sbjct: 343 GLTSKILDTLKKLNYVKPMPIQAQALPIIMSGRDCIGIANTGSGKTLAFVLPMLRHIKDQ 402

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +E G      P  L++ PTREL  Q+  + +++ K   +    + GG     Q  +L+
Sbjct: 403 PPIEAGDG----PIGLVMAPTRELVQQIHSDIKRFAKALGVRCVAVYGGSGVAQQINELK 458

Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RG ++++CTPGR++D    + GK+  +  +  LV+DEADRM DMGF P I  I   +   
Sbjct: 459 RGTEIVVCTPGRMIDVLCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 518

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT   +++ ++   +  P  I+V   S   + I    V    +  +   LL+ 
Sbjct: 519 RQTVLFSATFPRQVETLARKVVDKPVEIQVGGRSVVNKDIIQ-LVEIRPESERFSRLLEL 577

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L +  +  K  + F                              RS+ K LS FK     
Sbjct: 578 LGEWYEKGKVLVFF------------------------------RSQEKSLSEFKNNVCN 607

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L++A+ +AARGLD+ ++  V NFD PN  E+Y+HR+GRTGRAGR G A T ++++D K+ 
Sbjct: 608 LLIATSVAARGLDVKELELVVNFDPPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYA 667

Query: 358 DAIEKLIE 365
             + K +E
Sbjct: 668 PDLVKALE 675


>gi|270610556|gb|ACZ92304.1| vasa-like protein [Scylla paramamosain]
          Length = 632

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 123/361 (34%), Positives = 200/361 (55%), Gaps = 12/361 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F ++ L   ++  V  A + +PTPIQ  +IP+++ + D+   AQTG+GKTA+F+LPML  
Sbjct: 196 FQEMNLRNVLLENVSKAEFPRPTPIQKYSIPILMNQRDLMACAQTGSGKTAAFLLPMLHY 255

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           ILE          V  P  L+L PTRELA Q+     K+     +  + + GG+    Q 
Sbjct: 256 ILENDIESHSFEDVAQPVGLVLAPTRELAIQIFQEARKFSLQTVIKNSCIYGGVATNFQL 315

Query: 117 KKL-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS--- 172
           +++ E+G  ++I TPG++L     GK+ + +++ LV DEADRMLD+GFI  ++ + +   
Sbjct: 316 RRMKEQGCHIIIATPGKLLFFLGMGKISLKSLKFLVFDEADRMLDLGFIDDMEKLVAHPD 375

Query: 173 LVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           + P   R T++FSAT  +E+Q+ +  FL N   +      +  + +    V   A++ K+
Sbjct: 376 MPPKGERLTMMFSATFPEEVQRCALRFLDNYLFLVAGQVGAANKDVCQTIVQV-AKFEKR 434

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L + L   +D+ +  ++F   K+    +   L   G     +HG   Q  R + LS F
Sbjct: 435 DKLAEYLRSFEDSQEKVLVFVEMKRQADFVGTYLSTNGSRSVTLHGGRYQEQREEALSAF 494

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +    +++VA+ +AARGLDI  VG+V N+D+P  A+ Y+HRIGRTGR G  G+A +    
Sbjct: 495 RSNQYRVLVATSVAARGLDIRGVGYVINYDLPKSADEYVHRIGRTGRVGNRGQAVSFYDP 554

Query: 352 E 352
           E
Sbjct: 555 E 555


>gi|195385378|ref|XP_002051383.1| GJ15436 [Drosophila virilis]
 gi|194147840|gb|EDW63538.1| GJ15436 [Drosophila virilis]
          Length = 403

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 130/377 (34%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F    + 
Sbjct: 31  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATF---SIA 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    +R  + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 88  ILQQIDTSMRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L   +I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 148 GCHVVVGTPGRVYDMINRKVLRTQSIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F++ P  I V     T E I+  F     Q + K   L  L  +
Sbjct: 208 LLSATMPPDVLEVSRCFMREPVSILVKKEELTLEGIKQ-FYVNVKQENWKLGTLCDLYDT 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG++DQR R  I+  F+ G+ ++++ 
Sbjct: 267 L-SITQSVIFCNTRRKVDQLTQEMSNHNFTVSAMHGDMDQRDREVIMKQFRSGSSRVLIT 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  +D + +  IE
Sbjct: 326 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIE 385

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 386 QFYHTTIEEMPANIADL 402


>gi|194753610|ref|XP_001959103.1| GF12227 [Drosophila ananassae]
 gi|190620401|gb|EDV35925.1| GF12227 [Drosophila ananassae]
          Length = 522

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 144/445 (32%), Positives = 233/445 (52%), Gaps = 22/445 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +   +   G    TPIQ   IP +L   D  G A+TG+GKT +F LP   I
Sbjct: 9   FQSLGLRPWLAKQLTKLGLKGATPIQQNCIPAILSGRDCIGAAKTGSGKTFAFALP---I 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEK          L+L PT ELA Q+++ F   G+   + V ++ GG     +++KL + 
Sbjct: 66  LEKLSEEPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMIESQKLMQR 125

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++  PGR+ DH         +N++ LV+DEADRML+  F   +  I   +P TRQ L
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKTRQNL 185

Query: 182 LFSATMTDELQK-----VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            FSATM D +++     +S++ L+  +  +V    +T ET++  ++   A Y +   L++
Sbjct: 186 FFSATMKDFMKESSIFPISKDCLEWSQDSDV----ATVETLDQRYLLC-ADYDRDMVLIE 240

Query: 237 QLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            L + ++  +N   +IF N KK    L  +L+        +HG + Q+ R+  LS FK  
Sbjct: 241 ALRKYREENENANVMIFTNTKKYCQLLSMTLKNMDIDNVCLHGFMRQKERVAALSRFKSN 300

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KED 353
            I+ ++A+D+AARGLDIP V  V N  +P   + YIHR+GRT RAGR G + ++     D
Sbjct: 301 HIRTLIATDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRD 360

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           ++ + AIE+ I  K+     D       +E+I   Q N  R+ + +   +  FD R +NY
Sbjct: 361 LELLGAIEEEINTKMTEHPID----QRMVERI-FMQVNVTRRESEMQLDNNDFDERAQNY 415

Query: 414 SSQKSHIPLKESEKISKLQQDIQEN 438
             +   +  K+ +++  L +  Q++
Sbjct: 416 RRKTWIMEGKDPDEMEALYRKKQKD 440


>gi|207347082|gb|EDZ73384.1| YDL160Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256273565|gb|EEU08498.1| Dhh1p [Saccharomyces cerevisiae JAY291]
 gi|259145084|emb|CAY78348.1| Dhh1p [Saccharomyces cerevisiae EC1118]
 gi|323334302|gb|EGA75683.1| Dhh1p [Saccharomyces cerevisiae AWRI796]
          Length = 506

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 122/360 (33%), Positives = 189/360 (52%), Gaps = 7/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++  + +AG+ KP+PIQ + IP+ +   D+   A+ GTGKTA+FV+P L  
Sbjct: 48  FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL-- 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            EK + ++   + LI+ PTRELA Q +      GK+  ++  +  GG        +L   
Sbjct: 106 -EKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNET 164

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +L+ TPGR+LD  +R    +++  + ++DEAD+ML   F   I+ I S +P T Q+LL
Sbjct: 165 VHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPSTHQSLL 224

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    +++     L  P  I +     T + I   +   + +  +K   L  L  S+
Sbjct: 225 FSATFPLTVKEFMVKHLHKPYEINL-MEELTLKGITQYYA--FVEERQKLHCLNTLF-SK 280

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   IIFCN    V  L   +   G+S    H  + Q+ R K+   F++G ++ +V S
Sbjct: 281 LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS 340

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+   D  ++  IE+
Sbjct: 341 DLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQ 400


>gi|312863883|ref|ZP_07724121.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
           vestibularis F0396]
 gi|311101419|gb|EFQ59624.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
           vestibularis F0396]
          Length = 447

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 127/366 (34%), Positives = 196/366 (53%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ +  + +PTP+Q K IP+V    D+ G ++TG+GKT +F+LP  
Sbjct: 1   MSFKDFNFKAYIQKALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKK 118
            I EK     R  + +I  P+RELA Q+    ++  K+    + V   +GG   + Q +K
Sbjct: 59  -IFEKLNPESRDVQVVITAPSRELATQIYQATKQIAKHSATEIRVVNYVGGTDKQRQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+     ++I TPGRI D      L ++     V+DEAD  +DMGF+  +  I + +P  
Sbjct: 118 LKVAQPHIVIGTPGRIYDLVKSRDLAIHKAHTFVVDEADMTMDMGFLDTVDKIAASLPKE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  V+T  + +K   +L+ 
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEQIKTSTVIADTIDNWLVSTKGR-NKNEQILEM 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   Q  +   +IF N K+   +L   L   G  V  IHG I  R R +I++  K+   +
Sbjct: 237 LKGMQPYL--AMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLEFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 RELEKM 360


>gi|255945213|ref|XP_002563374.1| Pc20g08510 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588109|emb|CAP86180.1| Pc20g08510 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 525

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 130/405 (32%), Positives = 208/405 (51%), Gaps = 10/405 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 46  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 105

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E+   +    + LIL PTRELA Q +   +  GK+  + V +  GG        +L 
Sbjct: 106 ---ERINPKSTKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRLN 162

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 163 DPVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLMSFHPKDRQV 222

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  ++NP  I +     T   I   +   + +  +K   L  L  
Sbjct: 223 MLFSATFPLIVKSFKDKHMRNPYEINL-MDELTLRGITQYYA--FVEEKQKVHCLNTLF- 278

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q+ R ++  +F+ G  + +V
Sbjct: 279 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLV 338

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 339 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYKI 398

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           E+ +  ++  +     +++  L   D  ++     +NP PQ   G
Sbjct: 399 EQELGTEIQPIP---QNIDKKLYVYDSPENIPRPISNPPPQTGAG 440


>gi|67537466|ref|XP_662507.1| hypothetical protein AN4903.2 [Aspergillus nidulans FGSC A4]
 gi|74657196|sp|Q5B3H7|DBP8_EMENI RecName: Full=ATP-dependent RNA helicase dbp8
 gi|40741791|gb|EAA60981.1| hypothetical protein AN4903.2 [Aspergillus nidulans FGSC A4]
 gi|259482230|tpe|CBF76513.1| TPA: ATP-dependent RNA helicase dbp8 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5B3H7] [Aspergillus
           nidulans FGSC A4]
          Length = 525

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 132/381 (34%), Positives = 210/381 (55%), Gaps = 19/381 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L ++P +V ++      KPT IQ   IP +L+  D  G ++TG+GKT +F +P   I
Sbjct: 97  FKALNVAPWLVGSLTTMAVRKPTAIQRACIPEILKGRDCIGGSRTGSGKTIAFSVP---I 153

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K          +IL PTRELA Q+ +  +      ++   L+ GG    +Q  +L   
Sbjct: 154 LQKWAEDPFGIFAVILTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRSQAIELAGR 213

Query: 123 ADVLICTPGRILDHFNRGKL----LMNNIEILVIDEADRMLDMG---FIPYIQNITSLVP 175
             V++ TPGR+ DH N         +  + ++V+DEADR+L  G    +P ++   S +P
Sbjct: 214 PHVVVATPGRLADHINTSGTDTVAGLKRVRMVVLDEADRLLSPGPGSMLPDVETCLSFLP 273

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKR--IEVNTPSSTA-ETIEHCFVATYAQY-- 228
               RQTLLF+AT+T E++ + ++  Q P +  I V   S+ A +T+      TY Q   
Sbjct: 274 GPSQRQTLLFTATLTPEVRAL-KSMPQTPGKPPIFVTEISTEAKDTVPPTLRTTYVQVPL 332

Query: 229 SKKCALLQQLLQSQDTM-KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
           + + A L  LL ++  + K+ I+F N  K+   L   L   G  V ++H  + Q  R   
Sbjct: 333 THREAFLHVLLSTESNITKSAIVFTNTTKSADLLERLLRSLGHRVTSLHSLLPQSERNSN 392

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L+ F+    +++VA+D+A+RGLDIP V  V NF+VP   ++Y+HR+GRT RAGR G+A T
Sbjct: 393 LARFRASAARVLVATDVASRGLDIPSVSLVVNFEVPRNPDDYVHRVGRTARAGRTGEAVT 452

Query: 348 LVAKEDIKHIDAIEKLIEKKV 368
           LV + D++ + AIE+ I +K+
Sbjct: 453 LVGQRDVQLVLAIEERIGRKM 473


>gi|108806879|ref|YP_650795.1| helicase [Yersinia pestis Antiqua]
 gi|108812966|ref|YP_648733.1| helicase [Yersinia pestis Nepal516]
 gi|170025113|ref|YP_001721618.1| helicase domain-containing protein [Yersinia pseudotuberculosis
           YPIII]
 gi|229894166|ref|ZP_04509352.1| putative ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|229903400|ref|ZP_04518513.1| putative ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|108776614|gb|ABG19133.1| Helicase [Yersinia pestis Nepal516]
 gi|108778792|gb|ABG12850.1| helicase [Yersinia pestis Antiqua]
 gi|169751647|gb|ACA69165.1| helicase domain protein [Yersinia pseudotuberculosis YPIII]
 gi|229679170|gb|EEO75273.1| putative ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|229704051|gb|EEO91064.1| putative ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|320015993|gb|ADV99564.1| putative ATP-dependent RNA helicase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 334

 Score =  206 bits (524), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 103/250 (41%), Positives = 163/250 (65%), Gaps = 3/250 (1%)

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  R
Sbjct: 5   LRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKR 64

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +DE++ ++   L NP  +EV   ++ +E I       +   ++K  LL Q+
Sbjct: 65  QNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSV--HFVDKNRKRELLSQM 122

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G I++
Sbjct: 123 I-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRV 181

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ K + 
Sbjct: 182 LVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLR 241

Query: 359 AIEKLIEKKV 368
            IE+L+++++
Sbjct: 242 DIERLLKREI 251


>gi|163732640|ref|ZP_02140085.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseobacter litoralis Och 149]
 gi|161394000|gb|EDQ18324.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseobacter litoralis Och 149]
          Length = 703

 Score =  206 bits (524), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 187/338 (55%), Gaps = 6/338 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR---VR 71
           A+ + GY   TP+Q       L + D+   AQTG+GKT  F L +   L   + R     
Sbjct: 8   ALAEQGYDTLTPVQEAVTAPELAQADLLVSAQTGSGKTVGFGLAIAPTLLDDQERFGPAG 67

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
            P  LI+ PTRELA QVA             V   +GG+    + + L+RGA V++ TPG
Sbjct: 68  TPLALIIAPTRELAQQVARELSWLYAKAGAVVISCVGGMDTRTERRALDRGAHVVVATPG 127

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+ DH  RG + + N+  +V+DEAD MLD+GF   ++ I    P  R+TL+FSAT+   +
Sbjct: 128 RLCDHIKRGNIELANLRAVVLDEADEMLDLGFRDELEFILDEAPKDRRTLMFSATVPKAI 187

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
            K++E++ ++ +RI   + +     IE+  + T+ +  +   +   +L+  +  KN I+F
Sbjct: 188 AKLAESYQRDAQRIATVSENRQHADIEYRALNTHPRDVENAII--NVLRFYEA-KNAIVF 244

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           CN +  V  L      +GFSV A+ G + Q  R   L   ++G  ++ VA+D+AARG+D+
Sbjct: 245 CNTRAAVARLTTRFTNRGFSVVALSGELTQSERSNALQALRDGRARVCVATDVAARGIDL 304

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           P++  V + D+P+ ++  +HR GRTGRAGR G +  +V
Sbjct: 305 PNLELVIHADLPSNSDTLLHRSGRTGRAGRKGVSALIV 342


>gi|71021007|ref|XP_760734.1| hypothetical protein UM04587.1 [Ustilago maydis 521]
 gi|46100328|gb|EAK85561.1| hypothetical protein UM04587.1 [Ustilago maydis 521]
          Length = 645

 Score =  206 bits (524), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 121/339 (35%), Positives = 184/339 (54%), Gaps = 15/339 (4%)

Query: 22  VKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-----PRTL 76
           VKP+PIQ++ +P      D+ GIA TG+GKT +F LP+L +  +   R+       P  +
Sbjct: 231 VKPSPIQMQGLPTAFSGRDMIGIAFTGSGKTLAFSLPILMLAAEEERRLPFTRGEGPVGM 290

Query: 77  ILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130
           I+ P+RELA Q  ++ +        G    + V L IGGI    Q+  + +G  +++ TP
Sbjct: 291 IVCPSRELARQTYESIKGLAEALVQGGYPQIGVLLCIGGISMAEQHHTMSKGFHIVVATP 350

Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190
           GR+ D   + K  ++  + L +DEADRM+DMGF   ++NI       RQTLLFSATM  +
Sbjct: 351 GRLQDMLTKKKFTLDCCKYLCLDEADRMIDMGFEEDVRNIMGFFKQQRQTLLFSATMPKK 410

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGII 250
           +Q  +E  L  P  + +N   + A +++      Y +   K   L + LQ   T    II
Sbjct: 411 IQDFAEQSLIRP--VIINVGRAGAASLDIIQEVEYVKQEAKMVYLLECLQK--TAPPVII 466

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F + K  V ++   L  +G    AIHG+  Q  R   +  FK G   +MVAS +A++GLD
Sbjct: 467 FSDNKNEVDDIQEYLLLKGVEAVAIHGSKTQDEREYAIRAFKSGQKDVMVASGVASKGLD 526

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
             ++ HV N+ +P   E+Y+H+IGRTGR+G+ G A T V
Sbjct: 527 FSEIQHVINYTMPKEIEDYVHQIGRTGRSGKTGIATTFV 565


>gi|300362252|ref|ZP_07058428.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           gasseri JV-V03]
 gi|300353243|gb|EFJ69115.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           gasseri JV-V03]
          Length = 464

 Score =  206 bits (524), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 203/367 (55%), Gaps = 15/367 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    + P++   +    + KPT +Q   IP +L   +V   A TG+GKT +++LP+L +
Sbjct: 11  FQSEKIRPELRTGLEKINFSKPTKVQAAVIPALLNNKNVVVQAATGSGKTHAYLLPLLNM 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQ---VADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +++      + + ++  P+RELA Q   VA    +     N+++  L GG     Q +K 
Sbjct: 71  IDENAP---VTQAVVTAPSRELANQLYKVARQL-RDASGLNISIEYLGGGNDRNRQIEKA 126

Query: 120 E-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           E R   ++I TPGR+ D  ++  + ++N++  +IDEAD  LDMGF+  +  I S     +
Sbjct: 127 ENRAPQLIIATPGRLHDFASKKVINLDNVKAFIIDEADMTLDMGFLGQMDEIIS--KLDK 184

Query: 179 QTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + +L  FSAT+  +L+     ++  P  I ++ P+  A TI++  +   ++  KK  L +
Sbjct: 185 KVVLGAFSATIPVKLENFLRKYMSKPDFIVIDNPAIIAPTIQNDLIDVGSR-DKKEILYK 243

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L   Q  +   ++F N KK V  L   LE+QG  V  IHG I +R R +I+   +EG  
Sbjct: 244 LLTMGQPYL--ALVFANTKKTVDELTDYLEEQGLKVAKIHGGITERERKRIIRQVREGQY 301

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VASDLAARG+D+P V  V N+++P   E  IHRIGRTGR G  G A TL+  E++  
Sbjct: 302 QYVVASDLAARGIDVPGVSLVVNYEIPKDLEFVIHRIGRTGRNGLKGHAITLIYDEEMPQ 361

Query: 357 IDAIEKL 363
           I+ +EKL
Sbjct: 362 IEDLEKL 368


>gi|320163650|gb|EFW40549.1| eukaryotic translation initiation factor 4A isoform 1B [Capsaspora
           owczarzaki ATCC 30864]
          Length = 419

 Score =  206 bits (524), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 130/380 (34%), Positives = 210/380 (55%), Gaps = 11/380 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  + L   ++  +   G+ KP+ IQ + I   ++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 47  NFDAMNLREDLLRGIYAYGFEKPSAIQQRAILPAIKGHDVIAQAQSGTGKTATFSISVLQ 106

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     +   + LIL PTRELA Q+       G   N      IGG   +   KKL+ 
Sbjct: 107 SIDTS---IPHCQALILAPTRELAQQIQKVVIALGDYMNANCHACIGGTNVQEDMKKLQN 163

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ D  NR  L  + I++ V+DEAD ML  GF   I ++  L+P T Q +
Sbjct: 164 GAHIVVGTPGRVQDMINRRALRTDRIKMFVLDEADEMLSRGFKDQIYDVFRLMPPTIQVV 223

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK---KCALLQQL 238
           L SATM  ++ +V+ +F++NP RI V     T + I   ++A   +  K    C L + L
Sbjct: 224 LLSATMPADVLEVTTHFMRNPIRILVKREELTLDGIRQFYIAVDKEEWKLDTLCDLYETL 283

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +Q      +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++
Sbjct: 284 NVTQ-----AVIFTNTRRKVDWLTEKMHAKDFTVSALHGDMDQKERDVIMREFRSGSSRV 338

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   +  +D + + 
Sbjct: 339 LITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFLTADDTRTLR 398

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            IE+    +++ +  +++ L
Sbjct: 399 EIEQFYNTQIEEMPMNVADL 418


>gi|255658992|ref|ZP_05404401.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Mitsuokella
           multacida DSM 20544]
 gi|260848951|gb|EEX68958.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Mitsuokella
           multacida DSM 20544]
          Length = 418

 Score =  206 bits (524), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 127/366 (34%), Positives = 198/366 (54%), Gaps = 12/366 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+S  ++ A+ D     PTPIQ + IP +L   D+ G+A TGTGKT +++LP+L  
Sbjct: 4   FRDLGVSEALIEALADKNIKAPTPIQQQAIPKILAGTDILGVAPTGTGKTLAYLLPILMQ 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL--LIGGIPFEAQNKKLE 120
           L+K R   R  + ++L PT ELA Q+        +   L + +  LIGG     Q  KL+
Sbjct: 64  LDKER---REAQAVVLAPTYELAMQITGEARDLSQKAGLGIRVQGLIGGANIARQIDKLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ + GRIL+   +GKL +  +  LV+DE DR+LD        ++  L+P  RQ 
Sbjct: 121 EKPQLVVGSAGRILELARKGKLKLTGVRFLVLDEFDRLLDDQNDMTTADVVKLLPQDRQA 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT   + ++   +FL +P+RIE+   +       H FV     + +K   +++L +
Sbjct: 181 LMFSATDPKK-ERERASFLGHPERIEIEQSAEEIAACHHYFVTV--PFREKIERVRKLTR 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S   ++ G++F N+          L  +G    ++ G   ++SR   ++  K G  QL++
Sbjct: 238 SL-PIERGLVFINRTFAAEQTLAKLRYEGIRAESLLGKDAKQSRQSAIAAIKGGRAQLLL 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++DLAARGLDIP V +V N D P  A+ Y HR GRT RAG  G   TL+   D K    +
Sbjct: 297 STDLAARGLDIPAVDYVINLDFPESAQVYQHRAGRTARAGHQGAVITLI---DFKEAVKL 353

Query: 361 EKLIEK 366
           E+L +K
Sbjct: 354 EQLGKK 359


>gi|326533288|dbj|BAJ93616.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 463

 Score =  206 bits (524), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 191/361 (52%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+  P+PIQ  ++P+ L   D+   A+ GTGKT ++V+P+L 
Sbjct: 43  EFEDYCLKRELLMGIFEKGWETPSPIQESSVPIALTGRDILARAKNGTGKTGAYVIPILE 102

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  + +++    LI+ PTRELA Q +    +  K+    V    GG   +    +L++
Sbjct: 103 RIDVSKDKIQ---ALIIVPTRELALQTSQICIELSKHMGCKVMATTGGTNLKEDIMRLQQ 159

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGRILD   +G  +M+   +LV+DEAD++L   F   + ++ S +P  RQ L
Sbjct: 160 QVHVIIATPGRILDLMKKGLAVMDTCSMLVMDEADKLLSQDFKNMLDSVISYLPPDRQIL 219

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    + +  +  + NP  I +     T + I   +   Y Q  +K   L  L  S
Sbjct: 220 LYSATFPCTVDQFIKKHMHNPYEINL-MEELTLKGITQYY--AYVQEKQKVHCLNTLF-S 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+S   IH  + Q  R +I  +F+ G  + +V 
Sbjct: 276 KLQINQSIIFCNSTQRVELLAKKITELGYSCFYIHAKMRQEHRNRIFHDFRNGACRNLVC 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  L+  +D   +  IE
Sbjct: 336 SDLFTRGIDIQAVNVVINFDFPKMSETYLHRIGRSGRFGHLGIAINLITYDDRYALHKIE 395

Query: 362 K 362
           +
Sbjct: 396 Q 396


>gi|296535750|ref|ZP_06897913.1| ATP-dependent RNA helicase DeaD [Roseomonas cervicalis ATCC 49957]
 gi|296263919|gb|EFH10381.1| ATP-dependent RNA helicase DeaD [Roseomonas cervicalis ATCC 49957]
          Length = 411

 Score =  206 bits (524), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 118/340 (34%), Positives = 188/340 (55%), Gaps = 10/340 (2%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
           A+ + GY +PT +Q   +       D+   AQTG+GKT +F L +   L  G A  RMP 
Sbjct: 13  ALTERGYAEPTTVQAAVLEPETAGRDLLVSAQTGSGKTVAFGLALAPEL-LGEAE-RMPP 70

Query: 75  T-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
                 +++ PTRELA QV              V   +GG+   A+ + L +GA +++ T
Sbjct: 71  AGAPLAIVVAPTRELALQVRAELSWLYAAAGGRVVSCVGGMDPLAERRALAQGAHIVVGT 130

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGR+ DH +RG L    +  +V+DEAD MLD+GF   ++ I    P  R+TLLFSAT+  
Sbjct: 131 PGRLCDHLDRGNLRPEALRAVVLDEADEMLDLGFREELEMILGAAPEERRTLLFSATVPP 190

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
           E+++++ +F ++  RI           I +  V    Q +++  +   LL+  D+++  I
Sbjct: 191 EIERLAGHFQRDALRISAKAEGGQHRDIAYKAVQVAPQDTERAVV--NLLRLSDSLR-AI 247

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           +FC+ +  V  L  +L ++GFS  A+ G + Q  R + L   ++G  Q+ VA+D+AARG+
Sbjct: 248 VFCSTRAAVTRLQANLAERGFSAVALSGELSQAERSRALQALRDGRAQVCVATDVAARGI 307

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+PD+G V + ++P   E  +HR GRTGRAGR G +  +V
Sbjct: 308 DLPDLGLVIHAELPKEPETMLHRSGRTGRAGRKGISVLVV 347


>gi|145350640|ref|XP_001419709.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579941|gb|ABO98002.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 723

 Score =  206 bits (524), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 122/371 (32%), Positives = 198/371 (53%), Gaps = 33/371 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A  GL+ +V   +  +G+ KP PIQ + +P+++   D  G+A+TG+GKT +++LPML  
Sbjct: 119 WAQAGLNNRVHELIRRSGFEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAYILPMLRH 178

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +  ++  A    P  +I+ PTREL  Q+  + ++YGK    +   + GG    AQ   L+
Sbjct: 179 INAQEPLASGDGPIGMIMGPTRELVTQIGKDCKRYGKAMGFSAVSVYGGSGIAAQIGDLK 238

Query: 121 RGADVLICTPGRILDHFNRGKLLMNN---IEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA+++ CTPGR++D    G   + N   +  +V+DEADRM DMGF P I  I + +   
Sbjct: 239 RGAEIVACTPGRMIDLLTTGSGKITNLRRVTYMVLDEADRMFDMGFEPQITRILANLRPD 298

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSAT    ++ ++   L NP  I++   S     IE   V    +  +   +L+ 
Sbjct: 299 RQTVMFSATFPHTMEALARAALDNPIEIQIGGKSVVNSDIEQ-LVELRPEEDRFLRVLEL 357

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L +  +  K  I   +Q K                          +    +S+FK     
Sbjct: 358 LGEWYERGKIIIFVASQDK--------------------------ADSTTISDFKSDVCN 391

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+ +AARGLD+ D+  V N+D PN  E+Y+HR+GRTGRAG+ G A T +++++ K  
Sbjct: 392 ILVATSVAARGLDVKDLRLVINYDTPNHLEDYVHRVGRTGRAGQKGTAVTFISEDEEKFA 451

Query: 358 -DAIEKLIEKK 367
            D ++ L E K
Sbjct: 452 PDLVKALKESK 462


>gi|328771893|gb|EGF81932.1| hypothetical protein BATDEDRAFT_19098 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 839

 Score =  206 bits (524), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 128/355 (36%), Positives = 199/355 (56%), Gaps = 14/355 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L LS      +    +V+ T IQ  ++P  L   DV G A+TG+GKT +F+LP+L +
Sbjct: 64  FAQLPLSKPTQQGLSKCNFVQFTEIQKASLPFALCSRDVLGAAKTGSGKTLAFILPVLEV 123

Query: 63  L-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  +  +++     +I+ PTRELA Q+ D   K G+ ++L+  LLIGG   +++  ++ R
Sbjct: 124 LYRESWSQMDGVGAVIISPTRELALQIFDVLRKVGRYHSLSAGLLIGGKDLKSEQDRVAR 183

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++  + + +N+++LV+DEADR+LD GF   I  I + +P +RQT
Sbjct: 184 -MNILVCTPGRLLQHMDQTPEFICDNLKLLVLDEADRILDNGFEKTINAIIANLPKSRQT 242

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAET-IEHCFVATYAQYSKKCALLQQ 237
           LLFSAT T  ++ ++   LQNP+ + V  N   ST +  I+   V T     KK  +L  
Sbjct: 243 LLFSATQTKSVRDLARLSLQNPEYVAVHDNAEQSTPKNLIQKYLVCTL---DKKLDILFS 299

Query: 238 LLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQ--GFSVCAIHGNIDQRSRMKILSNFKEG 294
            +++   +K  I +F +  K V  +  +  K   G  +  +HG   Q  R+ I   +   
Sbjct: 300 FIKTH--LKQKILVFLSSCKQVRFVFETFCKMQPGMPLLCLHGKQKQAKRVAIFEQYCRK 357

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
               + A+D+AARGLD P V  V   D P  A  YIHR+GRT R   HG+A  L+
Sbjct: 358 QGACLFATDIAARGLDFPAVDWVVQVDCPEDAATYIHRVGRTARYESHGQALLLL 412


>gi|120403427|ref|YP_953256.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           vanbaalenii PYR-1]
 gi|119956245|gb|ABM13250.1| DEAD/DEAH box helicase domain protein [Mycobacterium vanbaalenii
           PYR-1]
          Length = 443

 Score =  206 bits (524), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 119/351 (33%), Positives = 183/351 (52%), Gaps = 6/351 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+   +V ++   G  +P PIQ  T+P  L   DV G  +TG+GKT +F +P++T 
Sbjct: 6   FTDLGVPAPLVQSLSQRGITEPFPIQAATLPDALAGRDVLGRGKTGSGKTLAFSIPLVTA 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   R++   P  L+L PTRELA Q+    +       L +  + GG+    Q   L  G
Sbjct: 66  LTGRRSQPSRPSGLVLAPTRELATQITATLQPLAAANGLRITTIFGGVSQSRQVAALRAG 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++  PGR+ D   +  + + ++   V+DEAD M D+GF+P +  I +  P   Q LL
Sbjct: 126 VDIVVACPGRLEDLMGQKLISLQDVTTTVLDEADHMADLGFLPGVTRILAATPRGGQRLL 185

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT+ + + K+ + FL +P    VN  + + A+   H F     Q  K   L+ +L  +
Sbjct: 186 FSATLDNGVDKLVQRFLNDPVLHSVNEAAEAPAQMTHHVFHVGGVQEKKD--LVHRL--A 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T +  I+F   K     L   L   G     +HGN+ Q +R + L+ F  G  +++VA
Sbjct: 242 SGTGRR-ILFMRTKHQARKLAKQLTDAGVPSVDLHGNLSQPARERNLAAFSSGEARVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   T+V  E
Sbjct: 301 TDIAARGVHVDDVELVVHVDPPMEHKAYLHRSGRTARAGSDGDVVTVVLPE 351


>gi|308804011|ref|XP_003079318.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
 gi|116057773|emb|CAL53976.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
          Length = 683

 Score =  206 bits (523), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 135/403 (33%), Positives = 211/403 (52%), Gaps = 17/403 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           D  + G+S   V A+   G     PIQ   +   +   DV G A+TGTGKT +F LP++ 
Sbjct: 26  DVDNFGMSETTVQALRKRGVDALFPIQQAVLRPAMDGQDVVGRARTGTGKTLAFSLPVIE 85

Query: 62  IL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L       G    R P+ ++L PTRELA QV +  E +     L  A + GG P   Q 
Sbjct: 86  KLLSNGRGSGGRGYRNPKCIVLAPTRELAKQVEN--EIFITAPTLDTACVYGGTPIGQQE 143

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            KL RG D+++ TPGRI+D  NR  L ++ IE +V+DEAD+ML++GF   ++ I    P 
Sbjct: 144 SKLRRGVDIVVGTPGRIMDLMNRRALDLSEIEFVVLDEADQMLNVGFEEDVEAILHDCPA 203

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEV----NTPSSTAETIEHCFVATYAQYSKKC 232
            RQT LFSATM   ++++++ FL+  + + V    +     A+TI+   +      + + 
Sbjct: 204 GRQTFLFSATMPQWVKQITKKFLK-AQHVVVDLVGDNKQKVADTID--LMTCAVSQTSRT 260

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           +++  L+      K  I F   K+    L  +L K+  S   +HG+I Q  R + L  F+
Sbjct: 261 SIVMDLVTVYAKDKKCICFTQTKRAADELTAALGKR-VSCEVLHGDIAQAQRERTLQRFR 319

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +    +++A+D+AARGLDI DV  V ++++PN  E+++HR GRTGRAG+ G A  +    
Sbjct: 320 DNRFTVLIATDVAARGLDISDVDLVIHYELPNDVESFVHRCGRTGRAGQQGAAIAMYTDR 379

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           +   I  I+K  E   D+   D+ S    ++   +   N   K
Sbjct: 380 ESYMIRRIQK--ETGCDFRAIDIPSSTEVMDACAVTASNALSK 420


>gi|255541534|ref|XP_002511831.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223549011|gb|EEF50500.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 507

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 197/361 (54%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 134 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 193

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++    +++   +IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 194 KIDQDNNVIQV---VILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQ 250

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P ++ +   +P TRQ L
Sbjct: 251 PVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPPTRQIL 310

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++   + FLQ P  I +     T + I   +   + +  +K   L  L  S
Sbjct: 311 MFSATFPVTVKDFKDRFLQKPYVINL-MDELTLKGITQFY--AFVEERQKVHCLNTLF-S 366

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 367 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 426

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 427 TDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 486

Query: 362 K 362
           +
Sbjct: 487 Q 487


>gi|198475917|ref|XP_001357204.2| GA21521 [Drosophila pseudoobscura pseudoobscura]
 gi|198137464|gb|EAL34273.2| GA21521 [Drosophila pseudoobscura pseudoobscura]
          Length = 404

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 130/377 (34%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F    + 
Sbjct: 32  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATF---SIA 88

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    VR  + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 89  ILQQIDTAVRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L   +I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 149 GCHVVVGTPGRVYDMINRKVLRTQHIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F++ P  I V     T E I+  F     Q + K   L  L  +
Sbjct: 209 LLSATMPPDVLEVSRCFMREPVSILVKKEELTLEGIKQ-FYVNVKQENWKLGTLCDLYDT 267

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 268 L-SITQSVIFCNTRRKVDQLTQEMSSHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  +D + +  IE
Sbjct: 327 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIE 386

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 387 QFYHTTIEEMPANIADL 403


>gi|47223591|emb|CAF99200.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 532

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 121/368 (32%), Positives = 193/368 (52%), Gaps = 46/368 (12%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   V+  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA+F++PM   
Sbjct: 39  FQSMGLSFPVFKGVMRKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLIPMFER 98

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  +A+    R LIL PTRELA Q     ++ GK   L  AL++GG   + Q   L   
Sbjct: 99  LKAPQAQTGA-RALILSPTRELALQTMKFTKELGKFTKLKTALILGGDSMDDQFAALHEN 157

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + N+E +V DEADR+ +MGF   +Q I    P TRQTLL
Sbjct: 158 PDIIIGTPGRLMHVIKEMNLKLQNVEYVVFDEADRLFEMGFAEQLQEIIRRFPETRQTLL 217

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + + +   L  P  I ++  S  ++ I                   +LL S 
Sbjct: 218 FSATLPKVIVEFARAGLTEPVLIRLDVDSKLSDQI-------------------KLLTS- 257

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                                    +G     I+ ++DQ +R   +  F      +++ +
Sbjct: 258 -------------------------EGVECAYIYSSLDQTARKINIGKFVHRKAMVLLVT 292

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP + +V N++ P++A+ ++HR+GR GRAGR G A++++ ++++  +  +  
Sbjct: 293 DVAARGIDIPLLDNVINYNFPSKAKLFLHRVGRVGRAGRSGTAYSMICQDEMPFVFDLHL 352

Query: 363 LIEKKVDW 370
            + + V +
Sbjct: 353 FLGRPVQF 360


>gi|323450835|gb|EGB06714.1| hypothetical protein AURANDRAFT_28650 [Aureococcus anophagefferens]
          Length = 482

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 126/385 (32%), Positives = 191/385 (49%), Gaps = 28/385 (7%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-EK 65
           G+  K    +   G    T IQ  T        DV G ++TGTGKT +F LP++  L E+
Sbjct: 93  GVHAKQAAKLAQRGIDTMTEIQHLTFDAAHAGRDVLGKSRTGTGKTLAFGLPLVERLAER 152

Query: 66  GRA-------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            R        R R P  L+L PTRELA QV        + + L+     GG+ +  Q   
Sbjct: 153 AREGDYDPKKRARGPAILVLAPTRELAKQVEAELHLLAQTHGLSTTCFHGGVSYGPQENA 212

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG DVL+ T GR++DH +RG L +++   +V+DEAD ML MGF   ++ I S      
Sbjct: 213 LRRGVDVLVATVGRVIDHIDRGNLDLSDAYHVVLDEADEMLSMGFADDVERIFSDFDLDD 272

Query: 179 ------------------QTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIE 218
                             QTLLFSAT    ++K++  +L++P+ ++V  +     A T+ 
Sbjct: 273 LLGAAPPPADAAAPLRRPQTLLFSATTPSWVKKLTSKYLEDPELVDVVGDARQQAATTVT 332

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
           H  V        + +LL+ ++ +       I+F + KK    L      Q  +   +HG+
Sbjct: 333 HKAVLVPRGPDARASLLEDIIAAAQGGGRVIVFTSTKKECDELAGGPAFQRLAAQVLHGD 392

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
           I Q  R   L+ F+ G   ++VA+D+AARG+D+  V  V  +  P  AE Y+HR GRTGR
Sbjct: 393 IGQAQRETTLAQFRRGAFTVLVATDVAARGIDVKGVDLVVQYRTPRDAEGYVHRSGRTGR 452

Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKL 363
           AGR G A  L  + + + + ++E+L
Sbjct: 453 AGRDGTAVVLYDEREERDVRSLERL 477


>gi|301090390|ref|XP_002895410.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262098662|gb|EEY56714.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 565

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 141/405 (34%), Positives = 216/405 (53%), Gaps = 33/405 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--ML 60
           F  +   P ++ A+     ++PTPIQ++ IP +L   D+ GIA TG+GKT +F LP  ML
Sbjct: 93  FEYMRFPPAILDALKAKNILRPTPIQVQAIPCILAGRDMIGIAFTGSGKTVTFTLPLVML 152

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNY------NLTVALLIGGIP 111
            + E+ +  +     P  LI+ P+REL  Q  D    +  +        L   L IGG  
Sbjct: 153 ALEEEKKMPIIGHEGPFGLIVGPSRELMRQTFDVVTHFTSHLFKAGYPELRGLLCIGGED 212

Query: 112 FEAQNKKL-ERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQN 169
              Q+  +  RG  +++ TPGR L+HF + + + +   + + +DE DRMLD+GF   +  
Sbjct: 213 KRQQSDLIASRGVHIVVATPGR-LNHFLKLREMNLRLCKYICLDEGDRMLDLGFDEEVAA 271

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
             +     RQTLLFSATM  + Q  +++ L  P  + VN   + A  ++   V    +Y 
Sbjct: 272 TFNHFTSQRQTLLFSATMPQKFQDFAKDVLVKP--VLVNVGRAGAANLD---VIQEVEYV 326

Query: 230 KKCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           K+ A +  LL+  Q T    +IFC +K +V ++   L  +G    +IHG  DQ  R + +
Sbjct: 327 KQDAKIVYLLECLQKTSPPVVIFCERKGDVDDIYEYLILKGVEAASIHGGKDQEERNEAI 386

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             FK G   ++VA+D+AA+GLD PD+ HV NFD+P   ENY+HRIGRTGR G+ G A T 
Sbjct: 387 DLFKSGQKDVLVATDVAAKGLDFPDIKHVINFDMPAEIENYVHRIGRTGRCGKTGVATTF 446

Query: 349 VAKE-------DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
           + K        D+KH+     L+E K   +   L +L  P E+++
Sbjct: 447 INKSVPESALLDLKHL-----LVEAK-QTVPPVLKALEDPYEELE 485


>gi|149236686|ref|XP_001524220.1| hypothetical protein LELG_04190 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152013482|sp|A5E3K3|DBP4_LODEL RecName: Full=ATP-dependent RNA helicase DBP4
 gi|146451755|gb|EDK46011.1| hypothetical protein LELG_04190 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 775

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 121/355 (34%), Positives = 199/355 (56%), Gaps = 13/355 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL ++   +  + +  +V  T IQ K+IP+ L+  D+ G A+TG+GKT +F++P++ I
Sbjct: 50  FSDLPITQNTLRGLKECSFVSLTDIQKKSIPVALKGEDLMGTARTGSGKTLAFLIPVIEI 109

Query: 63  LEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L +           LI+ PTRELA Q+ +   K GK  + +  L+ GG   + + +++ R
Sbjct: 110 LLRNDITEYDGLAALIVSPTRELAVQIFEVLAKIGKYNSFSAGLVTGGKDVQYEKERISR 169

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+ TPGRI  H N    +  +N+++LV+DEADR LDMGF   I NI + +P TRQT
Sbjct: 170 -MNILVGTPGRISQHLNESVGMETSNLQVLVLDEADRCLDMGFRKQIDNILNHLPRTRQT 228

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTP---SSTAETIEHCFVATYAQYSKKCALLQQ 237
           LLFSAT TD +Q ++   L NPKRI  ++    S+  E+++  +V      ++K  +L  
Sbjct: 229 LLFSATHTDSVQDLARLSLTNPKRIGTSSDQDISAIPESLDQYYVKV--PLNEKLDVLWS 286

Query: 238 LLQSQDTMKNGI-IFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            ++S   +K+ I +F +  K V     +    + G  +  ++G   Q SR++    F + 
Sbjct: 287 FIKSH--LKSKILVFFSSSKQVQYAYETFRTLQPGIPLMKLYGRHKQTSRLETTVKFSQA 344

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
               + A+D+ ARGLD P +  V   D P     Y+HR+GR+ R GR GK+  ++
Sbjct: 345 QHACLFATDIVARGLDFPAIDWVIQVDCPEDVATYVHRVGRSARFGRQGKSLLML 399


>gi|195342874|ref|XP_002038023.1| GM18587 [Drosophila sechellia]
 gi|195576880|ref|XP_002078301.1| GD23375 [Drosophila simulans]
 gi|194132873|gb|EDW54441.1| GM18587 [Drosophila sechellia]
 gi|194190310|gb|EDX03886.1| GD23375 [Drosophila simulans]
          Length = 403

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 130/377 (34%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F    + 
Sbjct: 31  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATF---SIA 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    +R  + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 88  ILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 148 GCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F+++P  I V     T E I+  F     Q + K   L  L  +
Sbjct: 208 LLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQ-FYVNVKQENWKLGTLCDLYDT 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 267 L-SITQSVIFCNTRRKVDQLTQEMSLHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  ED + +  IE
Sbjct: 326 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDEDRRILKDIE 385

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 386 QFYHTTIEEMPANIADL 402


>gi|170042810|ref|XP_001849105.1| ATP-dependent RNA helicase DDX55 [Culex quinquefasciatus]
 gi|167866262|gb|EDS29645.1| ATP-dependent RNA helicase DDX55 [Culex quinquefasciatus]
          Length = 610

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 136/376 (36%), Positives = 205/376 (54%), Gaps = 43/376 (11%)

Query: 3   FADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + DL   LSP V+  +   G+ K TP+Q  TIPL+L   DV   A TG+GKT +FV+P++
Sbjct: 8   WTDLAKPLSPPVLEVIEQLGFEKMTPVQAATIPLLLSYKDVAAEAVTGSGKTLAFVVPLV 67

Query: 61  TILEKGRARVRMPRT----LILEPTRELAAQVAD------NFEKYGKNYNLTVALLIGGI 110
            +L K +      +     +I+ PTRELA Q++D        E+ GK    +  LLIGG 
Sbjct: 68  ELLLKRQRDSAWKKAEVGAIIVSPTRELATQISDVLGQFLGHEELGK---FSQKLLIGGN 124

Query: 111 PFEAQNKKLER-GADVLICTPGRILDHFNR-GKLLM----NNIEILVIDEADRMLDMGFI 164
             E     + R G+ VL+ TPGR+ D F R G L M     ++E+LV+DEADR+LD+GF 
Sbjct: 125 SVEEDVSGIVREGSTVLVATPGRLKDLFERKGDLNMASRVKSLELLVLDEADRLLDLGFE 184

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN--TPSSTAETIEHCFV 222
             I  I   +P  R+T LFSAT T E++ +    L+NP  + V   T  ST + +++ +V
Sbjct: 185 TTINTILGYLPRQRRTGLFSATQTKEVRDLMRAGLRNPVLVSVKEKTAVSTPKLLQNYYV 244

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS---------VC 273
               Q+  K A+L   ++ QD  K  I F          C  +E  G +         V 
Sbjct: 245 IVEPQF--KLAVLLDFIRKQDLKKAMIFFPT--------CACVEYWGVALAELMRPMKVL 294

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
           A+HG + +  R +IL++F+E    L++ +D+ ARG+DIP+V  V  +D P+ A  ++HR+
Sbjct: 295 ALHGKM-KAQRNRILTDFRESETALLLCTDVLARGVDIPEVDWVLQWDPPSNAAAFVHRV 353

Query: 334 GRTGRAGRHGKAFTLV 349
           GRT R G+ G A  ++
Sbjct: 354 GRTARQGQEGNALIML 369


>gi|297745244|emb|CBI40324.3| unnamed protein product [Vitis vinifera]
          Length = 472

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 196/361 (54%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 99  EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 158

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++    +++   +IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 159 KIDQDNNVIQV---VILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQ 215

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P I+ +   +P  RQ L
Sbjct: 216 PVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIHFMPLNRQIL 275

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++   + +LQ P  I +     T + I   +   + +  +K   L  L  S
Sbjct: 276 LFSATFPVTVKDFKDRYLQKPYIINL-MDELTLKGITQYY--AFVEERQKVHCLNTLF-S 331

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 332 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 391

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 392 TDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 451

Query: 362 K 362
           +
Sbjct: 452 Q 452


>gi|225455602|ref|XP_002269873.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 711

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 126/335 (37%), Positives = 179/335 (53%), Gaps = 18/335 (5%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV-------RMPRTLIL 78
           PIQ  T   +L   D+ G A+TG GKT +FVLP+L  L  G  R        R P  L+L
Sbjct: 144 PIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLINGPNRGSRKTGYGRPPCVLVL 203

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QV  +F+ YG    LT   L GG P++AQ  KL+RG D+++ TPGRI DH  
Sbjct: 204 LPTRELATQVYADFDVYGGAIGLTSCCLYGGAPYQAQEIKLKRGVDIVVGTPGRIKDHIE 263

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--QTLLFSATMTDELQKVSE 196
           RG +  ++++  V+DEAD ML MGF+  ++ I  ++      QTLLFSAT+   ++++S 
Sbjct: 264 RGNIDFSSLKFRVLDEADEMLRMGFVEDVELILGMLXDVSKVQTLLFSATLPGWVKEISS 323

Query: 197 NFLQ---NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
            FL+       +  N     +  + H  +   +  S +  ++  +++   +    IIF  
Sbjct: 324 RFLKPTLKTADLVGNEKMKASTNVRHIVLPCSS--SARSQVIPDVIRCYSSGGRTIIFTE 381

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            K +   L   L        A+HG+I Q  R   LS F+ G    +VA+++AARGLDI D
Sbjct: 382 TKDSASELAGLLP----GARALHGDIQQSQREVTLSGFRSGKFMTLVATNVAARGLDIND 437

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           V  +   + P   E YIHR GRTGRAG  G A  L
Sbjct: 438 VQLIIQCEPPRDVEAYIHRSGRTGRAGNSGVAVML 472


>gi|260830758|ref|XP_002610327.1| hypothetical protein BRAFLDRAFT_144535 [Branchiostoma floridae]
 gi|229295692|gb|EEN66337.1| hypothetical protein BRAFLDRAFT_144535 [Branchiostoma floridae]
          Length = 655

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 127/360 (35%), Positives = 198/360 (55%), Gaps = 28/360 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF +  ++ + V  +     VK  P+Q  T   V    DV   A+TGTGKT +F +P++ 
Sbjct: 91  DFENFRITAQTVTKLKARNVVKLFPVQYSTFDFVYDGWDVITQARTGTGKTLAFSIPLVE 150

Query: 62  ILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L+K      R R P  ++L PTRELA QV ++F+    +  LT   + GG P+  QN  
Sbjct: 151 RLQKDGVSIKRGRAPVVIVLAPTRELAIQVYEDFKSI--STKLTSFCVYGGTPYPPQNDA 208

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV---- 174
           + RG D+L+ TPGRI DH   G+L ++ +  +V+DE DRML+MG +  +  I        
Sbjct: 209 INRGLDILVGTPGRIQDHVRSGRLNLSELRHVVLDEVDRMLEMGMVEQVDEILEAAYKKD 268

Query: 175 --PFTRQTLLFSATMTDELQKVSENFLQ-NPKRIEV--NTPSSTAETIEHCFVATYAQYS 229
                 QTL FSAT+ + + + +  +++  PK +++     + +A T+EH  +A    + 
Sbjct: 269 DKSQNPQTLFFSATLPNWVHEAARKYMKAEPKHVDMIGTEQNRSATTVEH--LAIRCGWQ 326

Query: 230 KKCALLQQLLQSQDTMKNG-----IIFCNQKKNVVNLC-HSLEKQGFSVCAIHGNIDQRS 283
            +  ++  ++    TM +G     ++FC  KK    L    + KQ   V  +HG+I Q  
Sbjct: 327 ARAPVIADII----TMYSGQHGRAMVFCETKKEANQLVLEGVLKQEAQV--LHGDIPQAQ 380

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L +F++G IQ++VA+D+AARGLDIP+V  V   + P+  ++YIHR GRTGRAGR G
Sbjct: 381 RELTLKSFRDGNIQVLVATDVAARGLDIPEVDLVVQCEPPSDVDSYIHRSGRTGRAGRTG 440


>gi|167389793|ref|XP_001739087.1| ATP-dependent RNA helicase FAL1 [Entamoeba dispar SAW760]
 gi|165897365|gb|EDR24551.1| ATP-dependent RNA helicase FAL1, putative [Entamoeba dispar SAW760]
          Length = 384

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 119/376 (31%), Positives = 203/376 (53%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   GY KP+ IQ + I  + +  DV   +Q+GTGKTA+F + +L  
Sbjct: 14  FESMGLKEELLKGIYQQGYNKPSGIQQRGIVPITKGKDVIAQSQSGTGKTATFSIGILQN 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E  +  V++   +I+ PTRELA Q         +   + V   IGG   +   K +E+G
Sbjct: 74  VESNKREVQV---IIISPTRELAIQSERVISGLSQYMAIQVRGCIGGKSEKEDIKAIEKG 130

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGRI+    +  + + +I+ LVIDEAD M + GF+  I +I   +P  RQ +L
Sbjct: 131 CQVISGTPGRIMGLIKKRVINVRHIKTLVIDEADEMFNKGFMEIIYDIIKYLPIKRQIVL 190

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+T ++ ++    +  P  I +     T E I+  F+    +  K   L +  +   
Sbjct: 191 CSATLTGDVIEIGTKIMNKPIEILIKRNEITVEEIKQYFIEIEKEEQKFDTLCE--IYDS 248

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN KK V  L  ++ K  F V ++H  + Q+ R  I++ F++G  ++++ +
Sbjct: 249 MTITQSVIFCNMKKKVDWLTENMMKANFPVISMHSEMPQQERDYIMNIFRKGEKRVLITT 308

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ ARG+D+  +  V N+D+P   E YIHRIGR+GR GR G A   V K ++ ++  +E+
Sbjct: 309 DVWARGIDVTQISLVINYDMPLNREVYIHRIGRSGRFGRTGIAINFVLKNEMDNLRDLER 368

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ L  + + L
Sbjct: 369 YYSTQINELPENFAEL 384


>gi|225454138|ref|XP_002270379.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147785187|emb|CAN75439.1| hypothetical protein VITISV_000835 [Vitis vinifera]
          Length = 491

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 196/361 (54%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 118 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 177

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++    +++   +IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 178 KIDQDNNVIQV---VILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQ 234

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P I+ +   +P  RQ L
Sbjct: 235 PVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIHFMPLNRQIL 294

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++   + +LQ P  I +     T + I   +   + +  +K   L  L  S
Sbjct: 295 LFSATFPVTVKDFKDRYLQKPYIINL-MDELTLKGITQYY--AFVEERQKVHCLNTLF-S 350

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 351 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 410

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 411 TDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 470

Query: 362 K 362
           +
Sbjct: 471 Q 471


>gi|326923426|ref|XP_003207937.1| PREDICTED: nucleolar RNA helicase 2-like [Meleagris gallopavo]
          Length = 602

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 124/332 (37%), Positives = 193/332 (58%), Gaps = 21/332 (6%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM---LTILEKGRARVRMPRTLILEPTR 82
           P+Q+KT   +    D+   A+TGTGKT SF +P+   L  + +   R R P+ L+L PTR
Sbjct: 62  PVQVKTFQPIYDGKDLIAQARTGTGKTFSFAIPLTEKLQSVSQDERRGRSPKVLVLVPTR 121

Query: 83  ELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142
           ELA QVA +F+   +   L+VA   GG P++AQ   L+ G D+L+ TPGRI DH    KL
Sbjct: 122 ELAIQVARDFKNLTRK--LSVACFYGGAPYKAQFDLLKSGIDILVGTPGRIKDHIQNSKL 179

Query: 143 LMNNIEILVIDEADRMLDMGFIPYIQNITSLV-----PFTRQTLLFSATMTDELQKVSEN 197
            ++N++ +V+DE D MLDMGF   ++ I             QTLLFSAT    +  V++ 
Sbjct: 180 DLSNVKHVVLDEVDHMLDMGFAEQVEEILGFAYKKGSENNPQTLLFSATCPRWVYDVAKK 239

Query: 198 FLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ-SQDTMKNGIIFCN 253
           ++++  +++++       TA T+EH  +A   + S++  +L  ++Q    +    I+FC 
Sbjct: 240 YMKDEYEQVDLIGKKTQRTATTVEH--LAIQCRSSQRVEVLGDIIQVYSGSHGRTIVFCE 297

Query: 254 QKK--NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
            KK  N + L  +L+++  S   +HG+I Q+ R   L  F+ G  ++++A+++AARGLDI
Sbjct: 298 TKKEANELALNSALKQEAQS---LHGDIPQKQREITLKGFRNGVFEVLIATNVAARGLDI 354

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           P+V  V     P   ++YIHR GRTGRAGR G
Sbjct: 355 PEVDLVIQCSPPKDVDSYIHRSGRTGRAGRAG 386


>gi|313219016|emb|CBY43265.1| unnamed protein product [Oikopleura dioica]
          Length = 393

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 121/315 (38%), Positives = 178/315 (56%), Gaps = 11/315 (3%)

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           +GR ++  P  L+L PTRELA+Q+ +   K+     +   ++ GG    AQ + L+RG  
Sbjct: 3   RGRRKI-YPLALVLSPTRELASQIYEESRKFAYRSQVRPCVIYGGADVGAQMRDLDRGCH 61

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS--LVPFT--RQT 180
           +L+ TPGR+ D  +RGK+ ++    L +DEADRMLDMGF P I+ I     +P    RQT
Sbjct: 62  LLVATPGRLADFLDRGKIGLDYCRYLCLDEADRMLDMGFEPQIRRIVEKDAMPAKGDRQT 121

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT   E+Q ++ +FL N   + V    ST++ I    V  +   + K   L  LL 
Sbjct: 122 LMFSATFPKEIQHLARDFLDNYIFLTVGRVGSTSQNITQKVV--WVDENDKINFLTDLLT 179

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D     ++F   KK    L + L  +GF    IHG+ +QR R   L +F+E    ++V
Sbjct: 180 ATDQNTCFVVFTETKKGADYLDNYLYDRGFRSTCIHGDRNQREREGALKSFREAVTPVLV 239

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI-DA 359
           A+ +AARGLDIP+V HV NFD+P+  + Y+HRIGRTGR G  G A +    ++   + D 
Sbjct: 240 ATAVAARGLDIPNVRHVINFDLPSDIDEYVHRIGRTGRVGNIGLATSFFNDKNSNIVRDL 299

Query: 360 IEKLIEKKV---DWL 371
           +E LIE K    +WL
Sbjct: 300 LELLIEAKQEVPEWL 314


>gi|325094386|gb|EGC47696.1| ATP-dependent RNA helicase DBP4 [Ajellomyces capsulatus H88]
          Length = 811

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 132/393 (33%), Positives = 215/393 (54%), Gaps = 28/393 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKP-TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+DL LS       L AG+ K  T IQ + IP  L+  D+ G A+TG+GKT +F++P+L 
Sbjct: 51  FSDLPLSEPTADG-LSAGHFKSLTDIQARAIPYALKGRDILGAAKTGSGKTLAFLVPLLE 109

Query: 62  IL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L  K          L+L PTRELA Q+ +   K G+++  +  L+IGG   + + ++L 
Sbjct: 110 LLYRKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHTFSAGLVIGGKGLQEEQERLG 169

Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  ++L+CTPGR+L H ++      N+I++LV+DEADR++DMGF   +  I   +P  RQ
Sbjct: 170 K-MNILVCTPGRMLQHMDQTAAFDTNHIQLLVLDEADRIMDMGFQSTVDAIIDHLPKERQ 228

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVN--TPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           T+LFSAT T ++  ++   L++P+ + V+    S+T   ++  ++ T     +K   L  
Sbjct: 229 TMLFSATQTKKVSDLARLSLRDPEYVSVHETAASATPAKLQQNYIIT--PLPEKLDTLWS 286

Query: 238 LLQSQDTMKNGII-FCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            ++S  ++K+ II F +  K V  +  S    + G  +  +HG   Q +R+ I   F   
Sbjct: 287 FIRS--SLKSKIIVFFSSGKQVRFVYESFRHMRPGIPLLHLHGRQKQGARVDITKKFSAA 344

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
               + A+D+AARGLD P V  V   D P  A+ YIHR GRT R  R+G+A   +  E  
Sbjct: 345 KYACLFATDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFL--EPS 402

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
           +    +++L +KK+            P+EKI++
Sbjct: 403 EEAGMLKRLEQKKI------------PIEKINV 423


>gi|255729496|ref|XP_002549673.1| hypothetical protein CTRG_03970 [Candida tropicalis MYA-3404]
 gi|240132742|gb|EER32299.1| hypothetical protein CTRG_03970 [Candida tropicalis MYA-3404]
          Length = 554

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 187/360 (51%), Gaps = 7/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTASF++P L +
Sbjct: 32  FEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQL 91

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    +V+    LIL PTRELA Q +      GK+  +   +  GG        +L   
Sbjct: 92  VKPKLNKVQ---ALILVPTRELALQTSQVVRTLGKHLGVQCMVTTGGTSLRDDIVRLHDP 148

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +L+ TPGR+LD   R  + ++   + V+DEAD+ML   F   I+ I    P  RQ LL
Sbjct: 149 VHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKMLSREFKGIIEQILEFFPANRQALL 208

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    ++   +  L  P  I +     T + I   +   + +  +K   L  L  S+
Sbjct: 209 FSATFPLAVKSFMDQHLNKPYEINLMD-ELTLKGISQFYA--FVEEKQKLHCLNTLF-SK 264

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   IIFCN    V  L   + + G+S    H  + Q++R K+   F++G ++ +V S
Sbjct: 265 LQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCS 324

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L++  D   +  IE+
Sbjct: 325 DLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYSLYKIEQ 384


>gi|19115564|ref|NP_594652.1| ATP-dependent RNA helicase Hca4 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|74625979|sp|Q9UTP9|DBP4_SCHPO RecName: Full=ATP-dependent RNA helicase dbp4
 gi|6318264|emb|CAB60250.1| ATP-dependent RNA helicase Hca4 (predicted) [Schizosaccharomyces
           pombe]
          Length = 735

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 140/453 (30%), Positives = 239/453 (52%), Gaps = 25/453 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           FA+L L+     A+ +A ++  T IQ + IP  L+  D+ G A+TG+GKT +F++P++  
Sbjct: 41  FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  K    +     L++ PTRELA Q  +   K G+ ++ +  L+IGG  ++ + ++L R
Sbjct: 101 LYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR 160

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++      + +++L++DEADR+LDMGF   +  I S +P  RQT
Sbjct: 161 -MNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQT 219

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +LFSAT T  ++ ++   LQNP  I V  N  SST   +   ++      ++K  +L   
Sbjct: 220 MLFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLT--VPLTEKLDILFGF 277

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ--GFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +++    K  I+F +  K V  +  +  +   G S+  +HG   Q +R ++ + F     
Sbjct: 278 IRTHLKFKT-IVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRH 336

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++  +D+ ARGLD P V  V   D P   + YIHR+GRT R  R G A  L+   +   
Sbjct: 337 VVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLPSEEAF 396

Query: 357 IDAIE--KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +  +E  K+  ++++  +G  +S+   L+       N   K+N I  K  G    +K + 
Sbjct: 397 LKRLESKKIAVERINVKDGKKTSIRNQLQ-------NLCFKDNDI--KYIG----QKAFI 443

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
           S    I L++ + + +L +   E  ADSLG  G
Sbjct: 444 SYLRSIYLQKDKDVFQLDKLPVEAFADSLGLPG 476


>gi|300772630|ref|ZP_07082500.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760933|gb|EFK57759.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 398

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 121/354 (34%), Positives = 188/354 (53%), Gaps = 6/354 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +L LS  ++  +      +PT IQ   IP +L+  DV  I+ TGTGKT +F LP+L
Sbjct: 1   MNFQELNLSKLLIEKLNTFQIAEPTGIQKAVIPNILKGKDVLAISPTGTGKTEAFALPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEK-YGKNYNLTVALLIGGIPFEAQNKKL 119
            +L + +      +TLIL PTRELA Q     +       N+    + GG  +E Q  +L
Sbjct: 61  HLLTENKQSEH--KTLILSPTRELAQQTYLRIKNCTPSEVNINTISIFGGQSYEKQASEL 118

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +++ TPGR+LD  ++  + ++  + +VIDEAD ML +GFI  +  I   +P  RQ
Sbjct: 119 STDPAIVVATPGRLLDLMDQKLINLSVFKKVVIDEADEMLKLGFIAALFRIMGHLPAGRQ 178

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   EL+++    L+ P R EV    +    I    +  +   + K  L++ L+
Sbjct: 179 TLLFSATFPKELEELVPKVLRQPFRFEVQNREAEQSQIHQYLL--FVDKNDKKNLIKYLI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   +IF      V  +   L+K G +   ++G+  Q  R  I+ +FK      +
Sbjct: 237 DHYK-IDAALIFTRTTHGVDRIVSDLQKHGLTAQGLYGDKSQAVRTAIVEDFKNRNFNFL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+A+RGL + D+ HV N+++P+ AE Y+HRIGRT R  R G  +T    ED
Sbjct: 296 VATDIASRGLHLDDLDHVINYEIPDTAEQYMHRIGRTARGTRDGYTYTFCDAED 349


>gi|195030620|ref|XP_001988166.1| GH11018 [Drosophila grimshawi]
 gi|193904166|gb|EDW03033.1| GH11018 [Drosophila grimshawi]
          Length = 389

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 130/377 (34%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F    + 
Sbjct: 17  NFDDMSLREELLRGIYGYGFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATF---SIA 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    VR  + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 74  ILQQIDTAVRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L   +I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 134 GCHVVVGTPGRVYDMINRKVLRTQSIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F++ P  I V     T E I+  F     Q + K   L  L  +
Sbjct: 194 LLSATMPPDVLEVSRCFMREPVSILVKKEELTLEGIKQ-FYVNVKQENWKLGTLCDLYDT 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 253 L-SITQSVIFCNTRRKVDQLTQEMSSHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  +D + +  IE
Sbjct: 312 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIE 371

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 372 QFYHTTIEEMPANIADL 388


>gi|326803852|ref|YP_004321670.1| DEAD-box ATP-dependent RNA helicase CshB [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650666|gb|AEA00849.1| DEAD-box ATP-dependent RNA helicase CshB [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 449

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 196/364 (53%), Gaps = 10/364 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D    P +  A+    + +PTPIQ K IP++     +   +QTG+GK+ +F+LP++
Sbjct: 1   MSFKDYHFQPFIEAALEKLAFKEPTPIQKKVIPVIQAGKSLVAQSQTGSGKSHAFLLPLI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKY--GKNYNLTVALLIGGIPFEAQNKK 118
             L+         + +I  P+RELA Q+    ++     +++  +    GG   + Q ++
Sbjct: 61  DQLKPAN----FTQLVITAPSRELADQLYQTAQQLVGDSDFDFHIERAYGGTDTKRQKER 116

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           LE +   V+I TPGR+LD    G + ++ +E  V+DEAD  LDMGF+  +  I S +P  
Sbjct: 117 LENQDPQVVIGTPGRLLDLVTEGSINVHKVEHFVVDEADMTLDMGFLHTVDQIASRMPDD 176

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            +  +FSAT+ ++L+     +L++P+ I+V      + TI +  +    + SK   L Q 
Sbjct: 177 LKIYVFSATIPEKLRPFLRKYLEHPEWIQVANEKLISPTITNILLPLRGR-SKDDLLKQA 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   +  +   +IF N  + V  L   L++ G SV  +HG++D R R +++   +    Q
Sbjct: 236 LTMGEPYL--VLIFANTIEEVDQLYLKLKQWGLSVAKLHGDLDSRERRRVMRQIQHLDYQ 293

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N+D+P   E +IHR+GRTGR G  G A T    +  K I
Sbjct: 294 YVVATDLAARGIDIEGVSHVVNYDIPKELEFFIHRVGRTGRQGMKGIALTFYHPDQEKAI 353

Query: 358 DAIE 361
             +E
Sbjct: 354 RWLE 357


>gi|190891857|ref|YP_001978399.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652]
 gi|190697136|gb|ACE91221.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652]
          Length = 651

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 119/350 (34%), Positives = 191/350 (54%), Gaps = 14/350 (4%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           G+ P +  A+   GY + TP+Q   +   L   D    AQTG+GKT +F L +   L +G
Sbjct: 6   GVVPAIAKALQKRGYAELTPVQKSMLDPDLAASDALVSAQTGSGKTVAFGLALAPTLLEG 65

Query: 67  RAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
             R      P  L++ PTRELA QV    E   +     +A  +GG+   ++ + LERGA
Sbjct: 66  SERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRALERGA 125

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            +++ TPGR+ DH  R  L M++++  V+DEAD MLD+GF   ++ I    P  R+TL+F
Sbjct: 126 HIVVGTPGRLCDHIRRRALDMSDLKAAVLDEADEMLDLGFREDLEFILDSAPDERRTLMF 185

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA----TYAQYSKKCALLQQLL 239
           SAT+   + K+++++ ++  RI     S+ AE  +H  +       A   ++ A++  L 
Sbjct: 186 SATVPAAIAKLAKSYQRDAVRI-----STAAEEKQHVDIEYRALMVAPSDRENAIINVLR 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             + T  N I+FC+ +  V +L      + FSV A+ G + Q  R   L   ++G  ++ 
Sbjct: 241 YYEAT--NAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERSHALQAMRDGRARVC 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +A+D+AARG+D+P +  V + D+P   E  +HR GRTGRAGR G +  +V
Sbjct: 299 IATDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIV 348


>gi|327190854|gb|EGE57918.1| ATP-dependent RNA helicase protein [Rhizobium etli CNPAF512]
          Length = 651

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 119/350 (34%), Positives = 191/350 (54%), Gaps = 14/350 (4%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           G+ P +  A+   GY + TP+Q   +   L   D    AQTG+GKT +F L +   L +G
Sbjct: 6   GVVPAIAKALQKRGYAELTPVQKSMLDPDLAASDALVSAQTGSGKTVAFGLALAPTLLEG 65

Query: 67  RAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
             R      P  L++ PTRELA QV    E   +     +A  +GG+   ++ + LERGA
Sbjct: 66  SERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRALERGA 125

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            +++ TPGR+ DH  R  L M++++  V+DEAD MLD+GF   ++ I    P  R+TL+F
Sbjct: 126 HIVVGTPGRLCDHIRRRALDMSDLKAAVLDEADEMLDLGFREDLEFILDSAPDERRTLMF 185

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA----TYAQYSKKCALLQQLL 239
           SAT+   + K+++++ ++  RI     S+ AE  +H  +       A   ++ A++  L 
Sbjct: 186 SATVPAAIAKLAKSYQRDAVRI-----STAAEEKQHVDIEYRALMVAPSDRENAIINVLR 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             + T  N I+FC+ +  V +L      + FSV A+ G + Q  R   L   ++G  ++ 
Sbjct: 241 YYEAT--NAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERSHALQAMRDGRARVC 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +A+D+AARG+D+P +  V + D+P   E  +HR GRTGRAGR G +  +V
Sbjct: 299 IATDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIV 348


>gi|154417727|ref|XP_001581883.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121916114|gb|EAY20897.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 441

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 131/432 (30%), Positives = 216/432 (50%), Gaps = 35/432 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG    +     + G  KPT +Q   +  ++  H+   I+QTGTGKTA+F LP+++ 
Sbjct: 5   FTSLGCPEFIYQTCKEIGISKPTAVQQACVKQIITGHNCIVISQTGTGKTAAFALPIIST 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K    +     L++ PTRELA Q+   F+ +G+  N  +  +IGG+    Q   LE+ 
Sbjct: 65  LSKDPYGIY---ALVISPTRELAQQICQQFKIFGRGMNADICPIIGGLAITDQASALEKN 121

Query: 123 ADVLICTPGRILDHFNRG-----KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             +++ TPGRIL H         +   +N++ LV+DE DR+   G+   +  I   +P  
Sbjct: 122 PHIVVATPGRILHHLRSASKGNTRFSFDNLQYLVLDEVDRLFKDGYWDDVLEIIKYLPEK 181

Query: 178 RQTLLFSATMTDE-----------------LQKVSENFLQNPKRIEVNTPSSTAE-TIEH 219
           RQTL FSAT +D+                 L  V +++  + K      P+   +  IEH
Sbjct: 182 RQTLCFSATKSDQVDLLTIMTKPPSTSSCPLPSVGKSWFSDDKLTFYWEPTDDLKPKIEH 241

Query: 220 C--FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
               V    +      ++Q+L+++ D  K  I+F + K+    +   L    +    +H 
Sbjct: 242 VKVLVQDEGREVYLMIIIQKLMEA-DLYKQVIVFASTKEAAQTITLILRNFSYKTAVMHS 300

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ +  R+K L  F+ G  +++VA+D+AARGLDIP V +V +F+ P  A  Y+HR GRTG
Sbjct: 301 DMQESERLKELEEFRAGRQRILVATDVAARGLDIPFVDNVIHFNPPQNAATYVHRAGRTG 360

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           RAGR G++   V+  + K    IEK I ++   L  + S +    EK+++     A+K+ 
Sbjct: 361 RAGREGRSILFVSGREKKIEQEIEKEIGQQFTELKVEKSEMK---EKMNVF---WAKKDA 414

Query: 398 PIPQKSTGFDRR 409
            I    + F +R
Sbjct: 415 KIAMSQSDFGKR 426


>gi|193641205|ref|XP_001950880.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
           [Acyrthosiphon pisum]
          Length = 569

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/365 (33%), Positives = 203/365 (55%), Gaps = 12/365 (3%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRA 68
           P ++  +    ++ P+PIQ +  P+++  HD+  IAQTGTGKT +++LP L  +L++   
Sbjct: 194 PDIMKVIKKQKFIVPSPIQCQAWPIIMSGHDLIAIAQTGTGKTLAYILPALIHLLQQPTP 253

Query: 69  RVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA--D 124
           R++   P  LIL PTREL  Q+ D   KY  N N+ V  + GG      +++L +    D
Sbjct: 254 RIKRIGPSVLILGPTRELVLQIHDEITKYLHN-NIKVVCVYGGGVSALTHQELIQAEKPD 312

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGR+ D      + ++++  +V+DEADRMLDMGF   I+     +   +QT+L S
Sbjct: 313 IIVATPGRLNDLVGIQAIKLDHVSYMVLDEADRMLDMGFKNQIELSLRHIRPDKQTILTS 372

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           AT    +Q ++  F +NP  I + +   ST +T+    +    +  +K   L   + S D
Sbjct: 373 ATWPTAVQNLANYFAKNPLHITIGSLDLSTVDTVTQKII--ILKEHQKEGWLDNFI-SND 429

Query: 244 TMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             KN   IIF  +K +V  +  +   +      IHG   Q  R   L++ + G + +++A
Sbjct: 430 LSKNDKVIIFMRKKTSVDKMYENFNSKNIGCRCIHGGRLQADREASLADIRNGVVSILIA 489

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RG+DI D+  V N+D P   E Y+HR+GRTGRAG+ G A TL +K D  +  A+ 
Sbjct: 490 TDVASRGIDIHDISLVINYDFPLNIEEYVHRVGRTGRAGKTGSAITLFSKYDKFNASALI 549

Query: 362 KLIEK 366
            ++EK
Sbjct: 550 GVLEK 554


>gi|259486129|tpe|CBF83723.1| TPA: ATP-dependent RNA helicase eIF4A (EC 3.6.1.-)(Eukaryotic
           initiation factor 4A)(eIF-4A)(Translation initiation
           factor 1) [Source:UniProtKB/Swiss-Prot;Acc:Q5B948]
           [Aspergillus nidulans FGSC A4]
          Length = 398

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 210/376 (55%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P+++  V   G+ +P+ IQ + I  +++ +DV   AQ+GTGKTA+F    ++ 
Sbjct: 27  FDSMELKPELLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATF---SISA 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    V+  + LI+ PTRELA Q+       G   N+     IGG         L  G
Sbjct: 84  LQKLDPNVKACQALIVAPTRELAQQIQKVVIAIGDFMNIQCHACIGGTAVRDDMNALREG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRI D   R  L  + +++ ++DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 144 PQIVVGTPGRIHDMIQRRVLKTDQMKMFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 204 LSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A+
Sbjct: 263 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIAT 321

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 322 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 381

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 382 FYSTQIEEMPMNVADL 397


>gi|227524339|ref|ZP_03954388.1| ATP-dependent RNA helicase [Lactobacillus hilgardii ATCC 8290]
 gi|227088570|gb|EEI23882.1| ATP-dependent RNA helicase [Lactobacillus hilgardii ATCC 8290]
          Length = 453

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/352 (35%), Positives = 193/352 (54%), Gaps = 10/352 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  L P ++ A+ D  + KPTP+Q K IP++LQ  DV G + TG+GKT +F+LP+   
Sbjct: 4   FSEFHLKPFILNALDDLKFTKPTPVQEKLIPVILQHRDVVGQSATGSGKTHAFLLPIFND 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKLE 120
           +++   ++   + +I  P+RELA Q+ D  ++  K     +++   +GG   + Q  KL+
Sbjct: 64  IDR---KIDEVQAVITTPSRELAYQILDAAKQLAKFSPDPISIGSYVGGTDKKRQEDKLK 120

Query: 121 RGADVLIC-TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    LI  TPGR+ D    G L ++    LVIDEAD  LDMGF+  + +I +      Q
Sbjct: 121 KEQPQLIVGTPGRVWDLIKNGGLDVHTASKLVIDEADMTLDMGFLDVVDHIAASFGKHVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++FSAT+  ++    + ++ NP   E+   S  + TI++  ++T  Q   K  L+  LL
Sbjct: 181 MMVFSATIPQKITVFLKKYMDNPVIEEIPVSSIISPTIDNWLISTKGQ--DKNQLIYHLL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     +IF N +K V  L   L  QG  V  +HG +  R R +I+   K    Q +
Sbjct: 239 TIGEPYLV-LIFANTRKRVEELTEYLRGQGLKVAMVHGGVKPRERKQIMKRIKNLDFQFV 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNR-AENYIHRIGRTGRAGRHGKAFTLVA 350
           VA+DLAARG+DI  V  V N D+P    E +IHR+GRTGR G  G + TL +
Sbjct: 298 VATDLAARGIDIEGVSQVINDDIPTEDLEFFIHRVGRTGRNGMSGTSITLYS 349


>gi|260800652|ref|XP_002595212.1| hypothetical protein BRAFLDRAFT_238703 [Branchiostoma floridae]
 gi|229280456|gb|EEN51224.1| hypothetical protein BRAFLDRAFT_238703 [Branchiostoma floridae]
          Length = 407

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 133/381 (34%), Positives = 205/381 (53%), Gaps = 9/381 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+GL   ++  +   G+ KP+ IQ + I    Q  DV   AQ+GTGKTA+F + +L 
Sbjct: 31  NFDDMGLREDLLRGIYAYGFEKPSAIQQRAILPCCQGRDVIAQAQSGTGKTATFAVAILQ 90

Query: 62  ILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L  K     R  + L+L PTRELA Q+       G   N      IGG    +    LE
Sbjct: 91  QLAMKAGNAGRNCQALVLAPTRELAQQIQKVVLALGDYMNARCHACIGGTNVRSDIAALE 150

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I   +P   Q 
Sbjct: 151 EGVHIVVGTPGRVNDMIGRRALNTSDVKLFVLDEADEMLSRGFKDQIYDIFKFLPSDIQV 210

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQ 237
           +L SATM  ++ +V+  F++NP RI V     T E I+  ++    +  K    C L + 
Sbjct: 211 ILLSATMPSDVLEVTTKFMRNPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYET 270

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L     T+   +IFCN ++ V  L   +  + F+V A+HG++DQR R  I+  F+ G+ +
Sbjct: 271 L-----TITQAVIFCNTRRKVDWLTEKMSGRDFTVSAMHGDMDQRERDLIMREFRSGSSR 325

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   +  ED + +
Sbjct: 326 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFMTMEDCRCL 385

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             IE+    +V+ +  +++ L
Sbjct: 386 KDIEQYYNTQVEEMPMNVADL 406


>gi|3775997|emb|CAA09201.1| RNA helicase [Arabidopsis thaliana]
          Length = 376

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 119/335 (35%), Positives = 188/335 (56%), Gaps = 9/335 (2%)

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           +L PTRELA Q+A+ FE  G + +L  A+L+GGI    Q   L +   V++ TPGR+ DH
Sbjct: 14  VLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDH 73

Query: 137 FNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
            +  K   + +++ LV+DEADR+L+  F   +  I   +P  R+T LFSATMT +++K+ 
Sbjct: 74  MSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFSATMTKKVRKLQ 133

Query: 196 ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
              L+NP +IE  +  ST +T++  +    A+Y K C L+  L +  ++    +IF    
Sbjct: 134 RACLRNPVKIEAASKYSTVDTLKQQYRFVAAKY-KDCYLVYILSEMPES--TSMIFTRTC 190

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
                L   L   GF    I G + Q  R+  L+ FK G   ++V +D+A+RGLDIP V 
Sbjct: 191 DGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVD 250

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDL 375
            V N+D+P  +++YIHR+GRT RAGR G   +LV + +++    IEKLI KK+     + 
Sbjct: 251 VVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLIGKKLPEYPAEE 310

Query: 376 SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
             +   LE++       A+K + +  K +G  +R+
Sbjct: 311 DEVLSLLERV-----AEAKKLSAMNMKESGGRKRR 340


>gi|6320041|ref|NP_010121.1| Dhh1p [Saccharomyces cerevisiae S288c]
 gi|729329|sp|P39517|DHH1_YEAST RecName: Full=ATP-dependent RNA helicase DHH1; AltName:
           Full=DExD/H-box helicase 1
 gi|160380644|sp|A6ZXG9|DHH1_YEAS7 RecName: Full=ATP-dependent RNA helicase DHH1; AltName:
           Full=DExD/H-box helicase 1
 gi|4353|emb|CAA46853.1| RNA-helicase of the DEAD-BOX family [Saccharomyces cerevisiae]
 gi|1061279|emb|CAA91586.1| putative RNA helicase [Saccharomyces cerevisiae]
 gi|1431254|emb|CAA98734.1| DHH1 [Saccharomyces cerevisiae]
 gi|151941843|gb|EDN60199.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
 gi|190405159|gb|EDV08426.1| hypothetical protein SCRG_00654 [Saccharomyces cerevisiae RM11-1a]
 gi|285810876|tpg|DAA11700.1| TPA: Dhh1p [Saccharomyces cerevisiae S288c]
 gi|323309886|gb|EGA63088.1| Dhh1p [Saccharomyces cerevisiae FostersO]
          Length = 506

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 122/360 (33%), Positives = 189/360 (52%), Gaps = 7/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++  + +AG+ KP+PIQ + IP+ +   D+   A+ GTGKTA+FV+P L  
Sbjct: 48  FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL-- 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            EK + ++   + LI+ PTRELA Q +      GK+  ++  +  GG        +L   
Sbjct: 106 -EKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNET 164

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +L+ TPGR+LD  +R    +++  + ++DEAD+ML   F   I+ I S +P T Q+LL
Sbjct: 165 VHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLL 224

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    +++     L  P  I +     T + I   +   + +  +K   L  L  S+
Sbjct: 225 FSATFPLTVKEFMVKHLHKPYEINL-MEELTLKGITQYYA--FVEERQKLHCLNTLF-SK 280

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   IIFCN    V  L   +   G+S    H  + Q+ R K+   F++G ++ +V S
Sbjct: 281 LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS 340

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+   D  ++  IE+
Sbjct: 341 DLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQ 400


>gi|323453556|gb|EGB09427.1| hypothetical protein AURANDRAFT_53132 [Aureococcus anophagefferens]
          Length = 790

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 129/383 (33%), Positives = 198/383 (51%), Gaps = 42/383 (10%)

Query: 3   FADLGLSPKVVCAVLDA--GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +   GL  K   A++ A   + +P PIQ + +P ++   DV GIA+TG+GKT +FVLP+L
Sbjct: 81  WGQCGLPDKAHGALVKAFGDHTEPFPIQKQALPALMSGRDVIGIAKTGSGKTLAFVLPLL 140

Query: 61  -------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                   I++ G      P  LIL P RELA Q+    +++     L    + GG    
Sbjct: 141 RHIMDQPPIVDGGDG----PVALILAPARELALQIWREAKRFANPLGLRAIAVYGGAKVA 196

Query: 114 AQNKKLERGADVLICTPGRILD--HFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNI 170
            Q   L+RGA++++ TPGR++D    ++G+L+ +  +  +V+DEADRM DMGF P I  I
Sbjct: 197 DQIADLKRGAEIVVATPGRLIDILTMSQGRLIGLRRVSYVVLDEADRMFDMGFEPQIAMI 256

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQT LFSAT    +++++   L  P  I     S  A+T++  +V   A+ +K
Sbjct: 257 LRNARPDRQTALFSATFPRAVEQLARKALSYPLEIVAGGRSVAADTVDQ-YVELRAEGTK 315

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC----------------- 273
              LLQ LL       + +IF + +    ++   L K G+                    
Sbjct: 316 FMRLLQ-LLGHWFERGSVLIFVDTQLKCDSIYEQLMKAGYRAAKESEIPNFKGSDLGHFP 374

Query: 274 -------AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
                  ++HG  DQ  R   +S+FK G   ++VA+ +A RGLD+P +  V N+  PN  
Sbjct: 375 LAGYPALSLHGGKDQADRDGTISDFKSGVATVLVATSVAGRGLDVPSIVCVVNYSAPNHL 434

Query: 327 ENYIHRIGRTGRAGRHGKAFTLV 349
           E+Y+HR+GRTGRAGR G A+T +
Sbjct: 435 EDYVHRVGRTGRAGRAGTAYTFL 457


>gi|319939694|ref|ZP_08014053.1| ATP-dependent RNA helicase [Streptococcus anginosus 1_2_62CV]
 gi|319811283|gb|EFW07589.1| ATP-dependent RNA helicase [Streptococcus anginosus 1_2_62CV]
          Length = 447

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 129/367 (35%), Positives = 193/367 (52%), Gaps = 11/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +      +  A+ D  +V+ T +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MEFTEFKFKDYIQEALKDLNFVEATEVQEKLIPVVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG--KNYNLTVALLIGGIPFEAQNKK 118
             L +    V++   +I  P+RELA Q+     +     +  + VA  +GG     Q  K
Sbjct: 61  QKLNEDADSVQV---VITAPSRELARQIYQAARQIAAFSDKEIRVAHYVGGTDKNRQIGK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L ++     V+DEAD  LDMGF+  +  I S +P  
Sbjct: 118 LSSSQPHIVIGTPGRIYDLVESGDLAIHKAHTFVVDEADMTLDMGFLMTVDKIASSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQ 236
            Q L+FSAT+  +LQ   + +L NP   ++ T +  ++TIE+  ++T  +  + +   + 
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVISDTIENWLISTKGRDKNAQIYEIT 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           QLLQ    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K    
Sbjct: 238 QLLQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDF 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   
Sbjct: 294 EYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSD 353

Query: 357 IDAIEKL 363
           I  +EK+
Sbjct: 354 IRELEKM 360


>gi|239830975|ref|ZP_04679304.1| DEAD-box ATP-dependent RNA helicase ydbR [Ochrobactrum intermedium
           LMG 3301]
 gi|239823242|gb|EEQ94810.1| DEAD-box ATP-dependent RNA helicase ydbR [Ochrobactrum intermedium
           LMG 3301]
          Length = 641

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 121/347 (34%), Positives = 191/347 (55%), Gaps = 10/347 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEK- 65
           ++P +  A+   GY   T +Q   +       D+   AQTG+GKT +F L M  TILE  
Sbjct: 7   IAPALSGALAARGYNTLTAVQNAVLASETLDADLLVSAQTGSGKTVAFGLAMANTILEDE 66

Query: 66  ---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
              G A    P  +I+ PTRELA QV    E    +    +A  +GG+    + + LERG
Sbjct: 67  LRFGDAGA--PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALERG 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A +++ TPGR+ DH  R  L M+ +  +V+DEAD MLDMGF   ++ I    P  R+TL+
Sbjct: 125 AHIVVGTPGRLRDHITRDALDMSELRAVVLDEADEMLDMGFREDLEFILGEAPENRRTLM 184

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++++ F  +  R+ V + +S    I++  +     + +  A++  LL   
Sbjct: 185 FSATVPKPIAQLAKRFQNDALRLTVQSETSQHADIDYVAMPV-PPHERDHAIINTLLYYD 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +N IIFC+ ++ V ++   L  +GF+V A+ G + Q  R   L   ++G  ++ VA+
Sbjct: 244 S--QNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVAT 301

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+P++  V + D+PN  E  +HR GRTGRAGR G    +V
Sbjct: 302 DVAARGIDLPNLDLVIHADLPNNPETMLHRSGRTGRAGRKGTCVLVV 348


>gi|304671|gb|AAA16339.1| DEAD-box protein [Drosophila melanogaster]
 gi|313850|emb|CAA80804.1| DEAD-box protein [Drosophila melanogaster]
          Length = 527

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 147/442 (33%), Positives = 229/442 (51%), Gaps = 16/442 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +V  +   G    TPIQ K IP +L   D  G A+TG+GKT +F LP   I
Sbjct: 9   FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALP---I 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+          L+L PT ELA Q+++ F   G+   + V ++ GG     +++KL + 
Sbjct: 66  LERLSEEPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQR 125

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++  PGR+ DH         +N++ LV+DEAD ML+  F   +  I   +P TRQ L
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADPMLNGDFDESLSIIERCLPKTRQNL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSS--TAETIEHCFVATYAQYSKKCALLQQLL 239
            FSATM D + K S  F       E    S+  T ET++H ++ + A Y     L++ L 
Sbjct: 186 FFSATMKDFI-KESSIFPIASDCFEWCEASAVRTVETLDHGYLVS-ADYDPDMVLIEALR 243

Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + ++  +N   +IF N KK    L  +L+        +HG + Q+ R+  LS FK   I+
Sbjct: 244 KYREENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIR 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKH 356
            ++A+D+AARGLDIP V  V N  +P   + YIHR+GRT RAGR G + ++     D++ 
Sbjct: 304 TLIATDVAARGLDIPSVELVMNHILPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLEL 363

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           + AIE+ I  K+     D       +E+I   Q N  R+ + +   +  FD R +NY  +
Sbjct: 364 LAAIEEEINTKLTEHPIDQRM----VERI-FMQVNVTRRESEMQLDNNCFDERAQNYRRK 418

Query: 417 KSHIPLKESEKISKLQQDIQEN 438
              +  K+ +++  L +  Q++
Sbjct: 419 TWIMEGKDPDQMEALYRKKQKD 440


>gi|68061551|ref|XP_672775.1| RNA helicase [Plasmodium berghei strain ANKA]
 gi|56490118|emb|CAI02126.1| RNA helicase , putative [Plasmodium berghei]
          Length = 434

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 127/386 (32%), Positives = 203/386 (52%), Gaps = 47/386 (12%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL     ++   L+  + +PT IQ  T P+ L   D+ G+A+TG+G T +FVLP L  
Sbjct: 15  FSDLDFHESIL-NYLNEKFKEPTAIQKITWPIALSGKDLIGVAETGSG-TLAFVLPCLMH 72

Query: 63  LEKGRARV-----------------------------------------RMPRTLILEPT 81
           + K + +                                          R    LIL PT
Sbjct: 73  ILKHKQKEMEENGVEHIKNNEEKLSENNNNDNNYDPDFEKEFQNDDSENRKTYGLILLPT 132

Query: 82  RELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGK 141
           REL  QV +  + +    NL    + GG+P   Q   +++GAD+++ TPGR+LD+   G 
Sbjct: 133 RELCMQVLNEIKNFESELNLKAVAVYGGVPKYFQINNIKKGADIIVATPGRLLDYLENGI 192

Query: 142 LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ- 200
           + +     +VIDEADR+LDMGF   ++ I + V   +Q L  +AT  ++++K++ +F   
Sbjct: 193 INLLRCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFLTATWPEQVRKLAYDFCSF 252

Query: 201 NPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
           +P +I++     TA + IE   + + +   KK  L       ++     +IFC+ K+N  
Sbjct: 253 DPVKIQIGKSELTANKNIEQQVIVSSSIDLKKKLLDWLKDNYENN--KILIFCDTKRNCD 310

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
           NLC  L    ++  +IHG+  QR R +IL+N+K     ++VA+D+A+RGLDI ++  V N
Sbjct: 311 NLCKELRYHQYNSLSIHGDKQQRERDRILNNYKNDRCNILVATDVASRGLDIKNISIVIN 370

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKA 345
           +D+PN  E+YIHRIGRTGRAG  G++
Sbjct: 371 YDIPNTIEDYIHRIGRTGRAGNKGQS 396


>gi|195434729|ref|XP_002065355.1| GK14711 [Drosophila willistoni]
 gi|194161440|gb|EDW76341.1| GK14711 [Drosophila willistoni]
          Length = 425

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 130/377 (34%), Positives = 205/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F    + 
Sbjct: 53  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATF---SIA 109

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++     R  + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 110 ILQQIDTTSRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 169

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L   +I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 170 GCHVVVGTPGRVYDMINRKVLRTQSIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 229

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F++ P  I V     T E I+  F     Q + K   L  L  +
Sbjct: 230 LLSATMPHDVLEVSRCFMREPVSILVKKEELTLEGIKQ-FYVNVKQENWKLGTLCDLYDT 288

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 289 L-SITQSVIFCNTRRKVDQLTQEMSNHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 347

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  ED + +  IE
Sbjct: 348 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDEDRRILKDIE 407

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 408 QFYHTTIEEMPANIADL 424


>gi|118482639|gb|ABK93239.1| unknown [Populus trichocarpa]
          Length = 413

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/379 (32%), Positives = 196/379 (51%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDAMNLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+      +    L+L PTRELA Q+       G    + V   +GG       + L  G
Sbjct: 102 LDYDIVECQ---ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSAG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+++  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  
Sbjct: 334 ITTDLLARGINVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLSD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     V+ L  +++ L
Sbjct: 394 IQRFYNVTVEELPSNVADL 412


>gi|61679843|pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
          Length = 400

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 122/360 (33%), Positives = 189/360 (52%), Gaps = 7/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++  + +AG+ KP+PIQ + IP+ +   D+   A+ GTGKTA+FV+P L  
Sbjct: 23  FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL-- 80

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            EK + ++   + LI+ PTRELA Q +      GK+  ++  +  GG        +L   
Sbjct: 81  -EKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNET 139

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +L+ TPGR+LD  +R    +++  + ++DEAD+ML   F   I+ I S +P T Q+LL
Sbjct: 140 VHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLL 199

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    +++     L  P  I +     T + I   +   + +  +K   L  L  S+
Sbjct: 200 FSATFPLTVKEFMVKHLHKPYEINL-MEELTLKGITQYYA--FVEERQKLHCLNTLF-SK 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   IIFCN    V  L   +   G+S    H  + Q+ R K+   F++G ++ +V S
Sbjct: 256 LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS 315

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+   D  ++  IE+
Sbjct: 316 DLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQ 375


>gi|256785835|ref|ZP_05524266.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
          Length = 473

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 180/347 (51%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +  +++ A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 47  FADLDMPAEMLAALESQGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA    P  L+L PTRELA QV D    Y ++  L +  ++GG+    Q   L  G
Sbjct: 107 TAGRRAEPGQPLGLVLVPTRELAQQVTDALRPYARSVKLRLTAVVGGMSIGRQASALRGG 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +V++ TPGR+ D  +RG   +N + + V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 167 VEVVVATPGRLKDLIDRGDCRLNQVSVTVLDEADQMADMGFMPQVTALLDQVRPDGQRML 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  +    T+EH  +  +   + K A   ++    
Sbjct: 227 FSATLDRNVDLLVRRYLSDPVVHSVDPSAGAVTTMEHHVLRVHG--ADKHAATTEIAARD 284

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   ++F   +  V  L   L   G    A+HG   Q  R + L+ FK G + ++VA+
Sbjct: 285 GRV---LMFLGTRHAVDRLTRDLLNSGVRAAALHGGKSQSQRTRTLAQFKNGHVTVLVAT 341

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARG+ +  +  V N D P+  ++Y+HR GRT RAG  G   T V
Sbjct: 342 NVAARGIHVDSLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTPV 388


>gi|71000753|ref|XP_755058.1| DEAD-box RNA helicase Dhh1/Vad1 [Aspergillus fumigatus Af293]
 gi|74673820|sp|Q4WWD3|DHH1_ASPFU RecName: Full=ATP-dependent RNA helicase dhh1
 gi|66852695|gb|EAL93020.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Aspergillus fumigatus
           Af293]
 gi|159128072|gb|EDP53187.1| ATP dependent RNA helicase (Dhh1), putative [Aspergillus fumigatus
           A1163]
          Length = 507

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 191/362 (52%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E+   +    + LIL PTRELA Q +   +  GK+  + V +  GG        +L 
Sbjct: 107 ---ERINPKSTKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRLN 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 164 DAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  ++NP  I +     T   I   +   + +  +K   L  L  
Sbjct: 224 MLFSATFPLIVKSFKDKHMRNPYEINL-MDELTLRGITQYYA--FVEEKQKVHCLNTLF- 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q+ R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKI 399

Query: 361 EK 362
           E+
Sbjct: 400 EQ 401


>gi|300176370|emb|CBK23681.2| unnamed protein product [Blastocystis hominis]
          Length = 408

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 120/368 (32%), Positives = 197/368 (53%), Gaps = 9/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF   GL  +++  + + G+ +P+P+Q +TIP +L   D+   ++ GTGKT ++V+P + 
Sbjct: 35  DFEKYGLKEEIMKVLCEKGWERPSPVQSQTIPSILSGKDILARSKNGTGKTGAYVIPCMN 94

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    + R+ + LIL P RELA Q +    ++GK   +      GG P      +L R
Sbjct: 95  QID---PKERVIQVLILVPARELALQTSRVVREFGKALKVDSMCCFGGQPLADDLYRLRR 151

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  VL+ T  RILD   RG   +++ + LV+DEAD+ML   F   ++++ + +P   QTL
Sbjct: 152 GVHVLVGTAARILDITRRGHCDLSHCKYLVLDEADKMLSDNFRQVVEDLIAYLPAEHQTL 211

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQ 240
           L SAT    ++  +  ++  P  + +NT +    + I   +V  Y +  +K   L  L  
Sbjct: 212 LLSATFPSTVRSFAAEYMHEP--VMINTMNELMLKGITQYYV--YLEERQKVNALHTLF- 266

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   +   G+S   IH  ++Q  R K+  NF +G  + +V
Sbjct: 267 SKLEVNQSIIFCNSVARVELLAKKIIDLGYSCYYIHSRMEQDDRNKVFHNFSQGAARHLV 326

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARGL++  V  V NFD+P  +E Y+HRIGR+GR G  G A   +  +D +    I
Sbjct: 327 CTDLLARGLNVTTVNVVINFDLPQSSETYLHRIGRSGRYGHLGLAVNFITDKDKEVFFTI 386

Query: 361 EKLIEKKV 368
           E+ ++ +V
Sbjct: 387 EQELDIEV 394


>gi|158298823|ref|XP_318978.3| AGAP009863-PA [Anopheles gambiae str. PEST]
 gi|157014071|gb|EAA43551.3| AGAP009863-PA [Anopheles gambiae str. PEST]
          Length = 404

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 130/380 (34%), Positives = 211/380 (55%), Gaps = 11/380 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  +GL  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F    + 
Sbjct: 32  NFDQMGLREELLRGIYAYGFEKPSAIQQRAIVPCVKGSDVIAQAQSGTGKTATF---SIA 88

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++ +  +   + LIL PTRELA+Q+       G          IGG       ++LE+
Sbjct: 89  ILQQIKTEIPDCQALILAPTRELASQIQKVVISLGDFLKAQCHACIGGTNVRDDMRRLEQ 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D  +R  L   NI++ V+DEAD ML  GF   IQ++   +P   Q +
Sbjct: 149 GCHIVVGTPGRVHDMISRNVLQPKNIKMFVLDEADEMLSRGFKDQIQDVFQKLPADVQVI 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQY--SKKCALLQQL 238
           L SATM  ++ +VS++F++NP +I V     T E I   +V   Y  +     C L   L
Sbjct: 209 LLSATMPADVLEVSQHFMRNPVKILVKKEELTLEGIRQFYVDVKYEDWKIGTLCDLYDTL 268

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                ++   +IFCN ++ V  L   + ++ F+V A+HG+++QR R  I+  F+ G+ ++
Sbjct: 269 -----SITQAVIFCNTRRKVDQLTEQMTEKTFTVSAMHGDMEQRDRDLIMKQFRTGSSRV 323

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V ++D + + 
Sbjct: 324 LITTDLLARGIDVQQVSLVINYDLPTLRENYIHRIGRGGRFGRKGVAINFVTEQDKRVLA 383

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            IEK     ++ +  +L+ +
Sbjct: 384 DIEKHYNTTIEEMPANLADM 403


>gi|15232722|ref|NP_187573.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|75337164|sp|Q9SF41|RH45_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 45
 gi|6682258|gb|AAF23310.1|AC016661_35 putative RNA helicase [Arabidopsis thaliana]
 gi|332641267|gb|AEE74788.1| DEAD-box ATP-dependent RNA helicase 45 [Arabidopsis thaliana]
          Length = 989

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/365 (33%), Positives = 193/365 (52%), Gaps = 38/365 (10%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           GL+ K++  +    Y KP PIQ + +P+++   D  G+A+TG+GKT  FVLPML  + K 
Sbjct: 402 GLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHI-KD 460

Query: 67  RARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
           +  V     P  L++ PTREL  Q+  +  K+ K   +    + GG     Q  +L+RG 
Sbjct: 461 QPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGT 520

Query: 124 DVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           ++++CTPGR++D    + GK+  +  +  LV+DEADRM DMGF P I  I   +   RQT
Sbjct: 521 EIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQT 580

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT   +++ ++   L  P  I+V   S   + I    +      S++ + L +LL 
Sbjct: 581 VLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQ--LVEIRPESERFSRLLELLG 638

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F                              RS+ K +S+FK     L++
Sbjct: 639 EWYEKGKVLVFV-----------------------------RSQEKSISDFKSDVCNLLI 669

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+ +AARGLD+ ++  V NFD PN  E+Y+HR+GRTGRAGR G A T ++++D K+   +
Sbjct: 670 ATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDL 729

Query: 361 EKLIE 365
            K +E
Sbjct: 730 VKALE 734


>gi|7385089|gb|AAF61690.1|AF220365_1 nucleolar RNA helicase II/Gu [Mus musculus]
 gi|148700138|gb|EDL32085.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_a [Mus
           musculus]
          Length = 805

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/335 (37%), Positives = 191/335 (57%), Gaps = 27/335 (8%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG---RARVRMPRTLILEPTR 82
           PIQ KT   V    D+   A+TGTGKT SF +P++  L+ G   R R R P+ L+L PTR
Sbjct: 237 PIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPTR 296

Query: 83  ELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142
           ELA QV+ +F    K   L+VA   GG P+  Q +++  G D+L+ TPGRI DH   GKL
Sbjct: 297 ELANQVSKDFSDITKK--LSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKL 354

Query: 143 LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR------QTLLFSATMTDELQKVSE 196
            +  ++ +V+DE D+MLDMGF   ++ I   V + +      QTLLFSAT    +  V++
Sbjct: 355 DLTKLKHVVLDEVDQMLDMGFADQVEEIL-CVAYKKDSEDNPQTLLFSATCPHWVFNVAK 413

Query: 197 NFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN-GIIFC 252
            ++++  +++++        A T+EH  +A    ++++ A++  +++     +   IIFC
Sbjct: 414 KYMKSTYEQVDLIGKKTQKAAITVEH--LAIKCHWTERAAVIGDVIRVYSGHQGRTIIFC 471

Query: 253 NQKKNVV----NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
             KK+      N C   + Q     ++HG+I Q+ R   L  F+ G   ++VA+++AARG
Sbjct: 472 ETKKDAQELSQNTCIKQDAQ-----SLHGDIPQKQREITLKGFRNGNFGVLVATNVAARG 526

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           LDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 527 LDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTG 561


>gi|226468128|emb|CAX76291.1| Eukaryotic initiation factor 4A [Schistosoma japonicum]
          Length = 392

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 115/350 (32%), Positives = 188/350 (53%), Gaps = 9/350 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  +++  +   GY KP+ IQ + I   ++  DV   AQ+GTGKTA+F +   +I
Sbjct: 21  FEKLGLKSELLRGIYSFGYEKPSAIQQRAIKPSVEGRDVIAQAQSGTGKTATFAI---SI 77

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++        + L+L PTRELA Q+    ++ G   N+     IGG         L++G
Sbjct: 78  LQRIDVSSNTCQALVLVPTRELARQIQTVVQRIGSYLNVRCHTCIGGTRMSEDVACLQQG 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR++D  NR  L  +NI+I V+DEAD+ML  GF P I+ I   +P + Q +L
Sbjct: 138 QHVVVGTPGRVIDMMNRSILATSNIKIFVLDEADQMLGRGFEPQIKEIYKYLPESAQIML 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++  ++   +Q+P +I +     T + I+  ++      SK+   L+ L+   
Sbjct: 198 LSATMPKQMLTIARGIMQDPVQILIKKEELTLDGIKQFYINV----SKEEYKLETLMDLY 253

Query: 243 DTM--KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             M     +IF N  +    L   L  + F V  I+ +++Q  R +++  ++ G  ++++
Sbjct: 254 KVMNLSQVVIFVNSVRKASYLSEELANRNFQVSCINSDMEQEKRDRVMEEYRSGRSRILL 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           ++D+ ARG+D+  V  V N+D+P   E YIHRI R GR GR G A   + 
Sbjct: 314 STDVLARGIDVQQVSLVVNYDLPGDRETYIHRICRGGRFGRKGTAINFIT 363


>gi|134085663|ref|NP_001076996.1| nucleolar RNA helicase 2 [Bos taurus]
 gi|133778115|gb|AAI23649.1| DDX21 protein [Bos taurus]
 gi|296472163|gb|DAA14278.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Bos taurus]
          Length = 784

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 127/354 (35%), Positives = 200/354 (56%), Gaps = 19/354 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ KT   V    D+   A+TGTGKT SF +P++  
Sbjct: 189 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLVEK 248

Query: 63  LE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L    + R R R P+ L+L PTRELA+QV+ +F    K   L VA   GG P+  Q +++
Sbjct: 249 LLGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKK--LAVACFYGGTPYGGQIERM 306

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
           + G D+L+ TPGRI DH   GKL +  ++ +V+DE D+MLDMGF   ++ I   V + + 
Sbjct: 307 KNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEIL-CVAYKKD 365

Query: 179 -----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSK 230
                QTLLFSAT    +  V++ ++++  +++++       TA T+EH  +A    +++
Sbjct: 366 SEDNPQTLLFSATCPYWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEH--LAIKCHWTQ 423

Query: 231 KCALLQQLLQSQDTMKN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A++  +++     +   IIFC  KK    L  ++  +     ++HG+I Q+ R   L 
Sbjct: 424 RAAVIGDVIRVYSGFQGRTIIFCETKKEAQELSQNVAVRQ-DAQSLHGDIPQKQREITLK 482

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
            F+ G   ++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 483 GFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTG 536


>gi|312220673|emb|CBY00614.1| similar to ATP-dependent RNA helicase dbp8 [Leptosphaeria maculans]
          Length = 505

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 142/436 (32%), Positives = 223/436 (51%), Gaps = 30/436 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DFA L ++P +V ++      KPT IQ   IP +L+  D  G ++TGTGKT +F +P  
Sbjct: 76  LDFASLDVAPWLVASLASMEIKKPTGIQQACIPEILKGRDCIGGSRTGTGKTVAFSVP-- 133

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL+K          LI+ PTRELA Q+ +  +      ++   L+ GG     Q   L 
Sbjct: 134 -ILQKWAEDPSGIFGLIITPTRELAIQIYEQVKAISAPQSMKPILVTGGSDQREQAIALA 192

Query: 121 RGADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSL 173
               ++I TPGR+ +H           +  +  +V DEADR+L  G    +P ++   S+
Sbjct: 193 SRPHIVIATPGRLAEHIRTSGEDTICGLRRVRFVVFDEADRLLAPGKGSMLPDLETCLSV 252

Query: 174 VP--FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI------EHCFVATY 225
           +P    RQTLLF+AT+T E+  + +     P R+ +       ET+      +  ++ T 
Sbjct: 253 LPPKEKRQTLLFTATVTQEVLALKDQ--PRPGRLPIFISEVDTETLAIPPKLQQKYLQTP 310

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
             + K+C L   L   ++  K+ IIFCN+ K    L + L      V A+H  + Q  R+
Sbjct: 311 VTH-KECYLHVLLNTPENLKKSVIIFCNRTKTATLLEYMLRLLEHRVTALHSGLKQSDRV 369

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L+ F+    +++VA+D+AARGLDIP+VG V N+DVP   ++YIHR+GRT RAGR G +
Sbjct: 370 GNLARFRAQAARILVATDVAARGLDIPEVGLVINYDVPRDPDDYIHRVGRTARAGRVGTS 429

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS---------LNPPLEKIDIAQHNHARKN 396
            TLV + D++ I AIE  + KK++    +  S         L P  EK   A  +     
Sbjct: 430 ITLVGQRDVELILAIETRVGKKMEEFEEEGVSVEGRVVRDALRPVTEKKREAMLSIEEGR 489

Query: 397 NPIPQKSTGFDRRKKN 412
           + + ++  G  RR+ +
Sbjct: 490 DVMGKRKVGMQRRRAD 505


>gi|74211590|dbj|BAE26522.1| unnamed protein product [Mus musculus]
          Length = 851

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/335 (37%), Positives = 191/335 (57%), Gaps = 27/335 (8%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG---RARVRMPRTLILEPTR 82
           PIQ KT   V    D+   A+TGTGKT SF +P++  L+ G   R R R P+ L+L PTR
Sbjct: 283 PIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPTR 342

Query: 83  ELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142
           ELA QV+ +F    K   L+VA   GG P+  Q +++  G D+L+ TPGRI DH   GKL
Sbjct: 343 ELANQVSKDFSDITKK--LSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKL 400

Query: 143 LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR------QTLLFSATMTDELQKVSE 196
            +  ++ +V+DE D+MLDMGF   ++ I   V + +      QTLLFSAT    +  V++
Sbjct: 401 DLTKLKHVVLDEVDQMLDMGFADQVEEIL-CVAYKKDSEDNPQTLLFSATCPHWVFNVAK 459

Query: 197 NFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN-GIIFC 252
            ++++  +++++        A T+EH  +A    ++++ A++  +++     +   IIFC
Sbjct: 460 KYMKSTYEQVDLIGKKTQKAAITVEH--LAIKCHWTERAAVIGDVIRVYSGHQGRTIIFC 517

Query: 253 NQKKNVV----NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
             KK+      N C   + Q     ++HG+I Q+ R   L  F+ G   ++VA+++AARG
Sbjct: 518 ETKKDAQELSQNTCIKQDAQ-----SLHGDIPQKQREITLKGFRNGNFGVLVATNVAARG 572

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           LDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 573 LDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTG 607


>gi|195120383|ref|XP_002004708.1| GI20069 [Drosophila mojavensis]
 gi|193909776|gb|EDW08643.1| GI20069 [Drosophila mojavensis]
          Length = 521

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 146/449 (32%), Positives = 230/449 (51%), Gaps = 32/449 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +   +   G    TPIQ   IP +L   D  G A+TG+GKT +F LP   I
Sbjct: 9   FLKLGLRPWLAKQLTKLGLKGVTPIQENCIPPILAGKDCIGAAKTGSGKTFAFALP---I 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEK          L+L PT ELA Q+++ F   G+   + V ++ GG     +++KL + 
Sbjct: 66  LEKLSEEPVSHFALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQR 125

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++  PGR+ DH         +N++ LV+DEADRML+  F   +  I   +P TRQ L
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFSFDNLKFLVVDEADRMLNGDFDESLAIIERCLPKTRQNL 185

Query: 182 LFSATMTDELQK-----VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            FSATM D +++     +S++ ++  +  +V    +T ET+E  ++   A Y +   L++
Sbjct: 186 FFSATMKDFMKESSIFPISKDLMEWSQESDV----ATVETLEQRYLLC-ADYDRDMVLIE 240

Query: 237 QL--LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            L   + ++   N +IF N KK    L  +L         +HG + Q+ R+  LS FK  
Sbjct: 241 ALRKFREENENANVMIFTNTKKYCQLLSMTLASMEIENVCLHGFMRQKERVAALSRFKSN 300

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KED 353
            I+ ++A+D+AARGLDIP V  V N  +P   + YIHR+GRT RAGR G A ++     D
Sbjct: 301 HIRTLIATDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGLAISIFRFPRD 360

Query: 354 IKHIDAIE-----KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           ++ + AIE     KL E  +D            +E+I   Q N  R+ + +   +  FD 
Sbjct: 361 LELLGAIEAEINCKLTEHPID---------QRMVERI-FMQVNVTRRESEMQLDNNDFDE 410

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQE 437
           R +NY  +   +  K+ +++  L +  Q+
Sbjct: 411 RAQNYRRKTWIMEGKDPDEMEALYRKKQK 439


>gi|330718297|ref|ZP_08312897.1| superfamily II DNA/RNA helicase [Leuconostoc fallax KCTC 3537]
          Length = 448

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 120/352 (34%), Positives = 198/352 (56%), Gaps = 15/352 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L P ++  +   G+ +PTP+Q+K IP +L+  DV G +QTG+GKT +F++P+   
Sbjct: 5   FGQFNLKPDLISGLTAIGFTQPTPVQLKLIPDILKGRDVVGQSQTGSGKTHTFLIPIFNR 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKL- 119
           +      V+    +I  P+RELA Q+    +   +  + ++ +A  +GG     Q K+L 
Sbjct: 65  IVFDANEVQ---AVITTPSRELADQITRAAKALAEQLDEDIRIADYVGGTDKARQIKQLG 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   ++I TPGRI D  +   L ++++  LV+DEAD  LDMGF+  +  I S +P   Q
Sbjct: 122 NQQPQIVIGTPGRIKDLVDSQALKLHHVRTLVVDEADMTLDMGFLNEVDAIASAMPDDLQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSATM ++L+   + ++ NP+   +   +  A+TI++  + T +  + K  ++ +LL
Sbjct: 182 TLVFSATMPEKLKPFLKKYMDNPRFEAIPVDTVIADTIDNWLIPTKS--ADKDDIIYKLL 239

Query: 240 QSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               T+ +    +IF N K+    L  +L  +G  V  +HG+I  R R + +   +    
Sbjct: 240 ----TIGHPYLALIFTNTKERAKALTRNLRGRGLKVAEVHGDIAPRERRRTMKQVQNLEF 295

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           Q +VA+DLAARG+DI  V HV N D+P+  E ++HR+GRTGR    G A TL
Sbjct: 296 QYVVATDLAARGIDIEGVSHVINDDIPSELEFFVHRVGRTGRNNLSGLAITL 347


>gi|255087406|ref|XP_002505626.1| predicted protein [Micromonas sp. RCC299]
 gi|226520896|gb|ACO66884.1| predicted protein [Micromonas sp. RCC299]
          Length = 620

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 127/358 (35%), Positives = 199/358 (55%), Gaps = 22/358 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS + +  + + GY + T +Q +TIP +L   DV G A+TG+GKT +F++P + +
Sbjct: 121 FDSLTLSKQTMAGISELGYTRMTEVQARTIPPLLAGRDVLGAARTGSGKTLAFLIPSVEL 180

Query: 63  LEKGRARVRMPR----TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L   +    MPR     ++L PTRELA Q+ +  ++  K ++ T  L+IGG    A+ +K
Sbjct: 181 LYHAKF---MPRNGTGVMVLSPTRELALQIYNVAQQLMKKHSQTHGLIIGGANRRAEAEK 237

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G ++L+ TPGR+LDH    K     ++++  +DEADRMLD+GF   ++ I  ++P  
Sbjct: 238 LVKGVNLLVATPGRLLDHMQNTKGFAFGSLKVFCMDEADRMLDIGFEEEMRTIVRMIPKD 297

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIE--HCFVATYAQYSKKCA 233
           RQT+LFSAT T +++ ++   L++P  I V+     STA  +E  +C V +     K+  
Sbjct: 298 RQTMLFSATQTTKVEDLARLSLKSPTYIGVDDARAVSTATGVEQGYCVVPS----EKRFL 353

Query: 234 LLQQLLQSQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
           LL   L+     K  + F  CN  K    L + ++     V  IHG   Q+ R      F
Sbjct: 354 LLFTFLKKNLKKKVMVFFSSCNSVKYHAELLNYID---IPVSDIHGKQKQQRRTTTFFEF 410

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            +    +++ +D+AARGLDIP V  +  FD P+  + YIHR+GRT R G  GK   L+
Sbjct: 411 CKADRGILLCTDVAARGLDIPAVDWIIQFDPPDDPKEYIHRVGRTAR-GTEGKGRALL 467


>gi|72384374|ref|NP_062426.2| nucleolar RNA helicase 2 [Mus musculus]
 gi|74213643|dbj|BAE35625.1| unnamed protein product [Mus musculus]
 gi|112180476|gb|AAH43655.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
 gi|148700139|gb|EDL32086.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Mus
           musculus]
          Length = 851

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/335 (37%), Positives = 191/335 (57%), Gaps = 27/335 (8%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG---RARVRMPRTLILEPTR 82
           PIQ KT   V    D+   A+TGTGKT SF +P++  L+ G   R R R P+ L+L PTR
Sbjct: 283 PIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPTR 342

Query: 83  ELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142
           ELA QV+ +F    K   L+VA   GG P+  Q +++  G D+L+ TPGRI DH   GKL
Sbjct: 343 ELANQVSKDFSDITKK--LSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKL 400

Query: 143 LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR------QTLLFSATMTDELQKVSE 196
            +  ++ +V+DE D+MLDMGF   ++ I   V + +      QTLLFSAT    +  V++
Sbjct: 401 DLTKLKHVVLDEVDQMLDMGFADQVEEIL-CVAYKKDSEDNPQTLLFSATCPHWVFNVAK 459

Query: 197 NFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN-GIIFC 252
            ++++  +++++        A T+EH  +A    ++++ A++  +++     +   IIFC
Sbjct: 460 KYMKSTYEQVDLIGKKTQKAAITVEH--LAIKCHWTERAAVIGDVIRVYSGHQGRTIIFC 517

Query: 253 NQKKNVV----NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
             KK+      N C   + Q     ++HG+I Q+ R   L  F+ G   ++VA+++AARG
Sbjct: 518 ETKKDAQELSQNTCIKQDAQ-----SLHGDIPQKQREITLKGFRNGNFGVLVATNVAARG 572

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           LDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 573 LDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTG 607


>gi|159109746|ref|XP_001705136.1| DEAD box RNA helicase Vasa [Giardia lamblia ATCC 50803]
 gi|157433216|gb|EDO77462.1| DEAD box RNA helicase Vasa [Giardia lamblia ATCC 50803]
          Length = 449

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 182/339 (53%), Gaps = 30/339 (8%)

Query: 40  DVCGIAQTGTGKTASFVLPMLTILEKGRAR-------------VRMPRTLILEPTRELAA 86
           D+   +QTG+GKT SF+ P++  L   RA+             +  P  +IL PTREL  
Sbjct: 2   DLLATSQTGSGKTFSFLSPIIAQLISSRAKDAISDDDKNMEQSMSFPLAVILSPTRELTQ 61

Query: 87  QVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNN 146
           Q+A    +     NL V L+ GG     Q   L++G D++I TPGR+ D   R  L +  
Sbjct: 62  QIAFMCYQLTFKTNLIVRLVYGGEGAREQRGLLKKGCDIVIATPGRLKDFLERRCLSLKY 121

Query: 147 IEILVIDEADRMLDMGFIPYIQNITSLVPF-------TRQTLLFSATMTDELQKVSENFL 199
           + ++V+DEAD+MLDMGF P I+++              RQTL+FSAT    +Q +++ +L
Sbjct: 122 VRVMVLDEADKMLDMGFEPQIRDLVYKFDMPGNGPNGNRQTLMFSATFGTGVQAMAKRYL 181

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYS-----KKCALLQQLLQSQDTMKNG----II 250
            N  RI V    ST   I+  F   +A+ +     K+   L  +L+S  ++       +I
Sbjct: 182 HNEARIHVGQIGSTTTMIKQQF-EYFAETAIKSVDKRIDKLIHILKSPGSIPTASFLTLI 240

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F   KK++  +   L   G  VC +HG+++QR R   L +FK+G   ++VA+D+A RG+D
Sbjct: 241 FVETKKDIGYIITKLLNAGLRVCEMHGDLEQRERQNNLKSFKDGKTPVLVATDVAQRGID 300

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           I  + HV NFD P   + YIHRIGRTGRAG  G A + +
Sbjct: 301 IGAIRHVINFDFPKDIDTYIHRIGRTGRAGAEGLATSFI 339


>gi|13959325|sp|Q9JIK5|DDX21_MOUSE RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
           protein 21; AltName: Full=Gu-alpha; AltName:
           Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
           RNA helicase II; AltName: Full=RH II/Gu
 gi|16975510|gb|AAD43959.3|AF159131_1 nucleolar RNA helicase II/Gu [Mus musculus]
          Length = 851

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/335 (37%), Positives = 191/335 (57%), Gaps = 27/335 (8%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG---RARVRMPRTLILEPTR 82
           PIQ KT   V    D+   A+TGTGKT SF +P++  L+ G   R R R P+ L+L PTR
Sbjct: 283 PIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPTR 342

Query: 83  ELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142
           ELA QV+ +F    K   L+VA   GG P+  Q +++  G D+L+ TPGRI DH   GKL
Sbjct: 343 ELANQVSKDFSDITKK--LSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKL 400

Query: 143 LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR------QTLLFSATMTDELQKVSE 196
            +  ++ +V+DE D+MLDMGF   ++ I   V + +      QTLLFSAT    +  V++
Sbjct: 401 DLTKLKHVVLDEVDQMLDMGFADQVEEIL-CVAYKKDSEDNPQTLLFSATCPHWVFNVAK 459

Query: 197 NFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN-GIIFC 252
            ++++  +++++        A T+EH  +A    ++++ A++  +++     +   IIFC
Sbjct: 460 KYMKSTYEQVDLIGKKTQKAAITVEH--LAIKCHWTERAAVIGDVIRVYSGHQGRTIIFC 517

Query: 253 NQKKNVV----NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
             KK+      N C   + Q     ++HG+I Q+ R   L  F+ G   ++VA+++AARG
Sbjct: 518 ETKKDAQELSQNTCIKQDAQ-----SLHGDIPQKQREITLKGFRNGNFGVLVATNVAARG 572

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           LDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 573 LDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTG 607


>gi|26368308|dbj|BAB26817.2| unnamed protein product [Mus musculus]
          Length = 832

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/335 (37%), Positives = 191/335 (57%), Gaps = 27/335 (8%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG---RARVRMPRTLILEPTR 82
           PIQ KT   V    D+   A+TGTGKT SF +P++  L+ G   R R R P+ L+L PTR
Sbjct: 264 PIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPTR 323

Query: 83  ELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142
           ELA QV+ +F    K   L+VA   GG P+  Q +++  G D+L+ TPGRI DH   GKL
Sbjct: 324 ELANQVSKDFSDITKK--LSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKL 381

Query: 143 LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR------QTLLFSATMTDELQKVSE 196
            +  ++ +V+DE D+MLDMGF   ++ I   V + +      QTLLFSAT    +  V++
Sbjct: 382 DLTKLKHVVLDEVDQMLDMGFADQVEEIL-CVAYKKDSEDNPQTLLFSATCPHWVFNVAK 440

Query: 197 NFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN-GIIFC 252
            ++++  +++++        A T+EH  +A    ++++ A++  +++     +   IIFC
Sbjct: 441 KYMKSTYEQVDLIGKKTQKAAITVEH--LAIKCHWTERAAVIGDVIRVYSGHQGRTIIFC 498

Query: 253 NQKKNVV----NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
             KK+      N C   + Q     ++HG+I Q+ R   L  F+ G   ++VA+++AARG
Sbjct: 499 ETKKDAQELSQNTCIKQDAQ-----SLHGDIPQKQREITLKGFRNGNFGVLVATNVAARG 553

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           LDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 554 LDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTG 588


>gi|307109457|gb|EFN57695.1| hypothetical protein CHLNCDRAFT_34665 [Chlorella variabilis]
          Length = 422

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 127/386 (32%), Positives = 198/386 (51%), Gaps = 29/386 (7%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE-KGRARVRMPR---T 75
           G+  P PIQ +  P++L   DV  I++ G+GKT +++LP   +L  KG     +P     
Sbjct: 5   GFSDPMPIQTRCWPVLLAGRDVEAISEPGSGKTLAYMLPAAVLLATKGHGGSTLPDGPLA 64

Query: 76  LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           LIL PTRELA QVA       K   L    + GGI  + Q + L +   +L+ TPGR+LD
Sbjct: 65  LILLPTRELAQQVASACRDLRKYCGLRTCCITGGIDKQQQVEALSKQPHLLVATPGRLLD 124

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS-LVPFTRQ--------------T 180
           H   G L +  +  LV+DEAD+ML +GF P I+ +   L+P   Q               
Sbjct: 125 HVQDGALKLAQVSYLVLDEADKMLGLGFQPQIEQLKQHLLPPAEQEGIAKKQKKMRRVQV 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LF+ATM + LQ+++  +LQ P+ I V T ++   +     V   A++ K   L++ L +
Sbjct: 185 ALFTATMPESLQELAAAWLQQPEVIRVATSAACISSSITQVVQVCAEHKKSHKLIKHLEK 244

Query: 241 SQDTMKNG------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
              + +        +IF N+ K    +   +++ G+    +HG   Q  R   + +F+ G
Sbjct: 245 ITASAQGARVRPRVLIFTNRIKTCRFVHRLVQEAGYRATLLHGERGQEEREVAMLDFRSG 304

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             Q+MVA+D+AARGL I  + HV N+D+    E YIHR+GRTGR    G AF+   +E  
Sbjct: 305 KAQIMVATDVAARGLHIRGLPHVVNWDLATNMEQYIHRVGRTGRLATDGHAFSFFTREMA 364

Query: 355 KHIDAIEKLIEK----KVDWLNGDLS 376
           +   A+  L+++    ++ W   D S
Sbjct: 365 RLAGAMVDLLQQHGQVRMGWFVQDQS 390


>gi|116194814|ref|XP_001223219.1| hypothetical protein CHGG_04005 [Chaetomium globosum CBS 148.51]
 gi|118575176|sp|Q2H2J1|DBP4_CHAGB RecName: Full=ATP-dependent RNA helicase DBP4
 gi|88179918|gb|EAQ87386.1| hypothetical protein CHGG_04005 [Chaetomium globosum CBS 148.51]
          Length = 825

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 139/454 (30%), Positives = 233/454 (51%), Gaps = 28/454 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L       +  + +   T +Q   IPL L+  D+ G A+TG+GKT +F++P+L  
Sbjct: 55  FTDLPLCEATASGLRASHFEVLTDVQRAAIPLALKGRDILGAAKTGSGKTLAFLVPVLEK 114

Query: 63  LEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   +         LI+ PTRELA Q+ +   K G+N+  +  L+IGG   + + ++L R
Sbjct: 115 LYHAKWTEYDGLGALIISPTRELAVQIFEVLRKIGRNHFFSAGLVIGGKSLKEEAERLGR 174

Query: 122 GADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++     +NN++ILV+DEADR++DMGF   +  +   +P TRQT
Sbjct: 175 -MNILVCTPGRMLQHLDQTANFDVNNLQILVLDEADRIMDMGFQSAVDALVEHLPTTRQT 233

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTP--SSTAETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT +  +  ++   L+ P+ +  +    S+T   ++  ++ T    ++K   L   
Sbjct: 234 LLFSATQSKRVSDLARLSLKEPEYVSAHEAAVSATPTNLQQSYIVT--PLAEKLDTLFGF 291

Query: 239 LQSQDTMKNGII-FCNQKKNVVNLCHSLEKQ--GFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L++   +K+ II F +  K V  +  S ++   G  +  +HG   Q +RM+I S F    
Sbjct: 292 LRT--NLKSKIIVFFSSGKQVRFVFESFKRMQPGIPLLHLHGRQKQVARMEITSRFSSAK 349

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
              + A+D+ ARG+D P V  V   D P  A+ YIHR+GRT R    G+A   +  E  +
Sbjct: 350 YGCLFATDVVARGVDFPAVDWVVQADCPEDADTYIHRVGRTARYESKGRAVLFL--EPSE 407

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
               +++L +KKV            PL+K+++ ++      N +  +S  F      Y  
Sbjct: 408 EAGFLKRLEQKKV------------PLQKVNVRENKKKSIKNEL--QSYNFQSPDLKYLG 453

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNM 449
           QK+ I    S  + K ++    N  D  G+  ++
Sbjct: 454 QKAFISYTRSIYLQKDKEVFNFNKLDLDGYAASL 487


>gi|255539651|ref|XP_002510890.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223550005|gb|EEF51492.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 690

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/335 (37%), Positives = 182/335 (54%), Gaps = 18/335 (5%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV-------RMPRTLIL 78
           PIQ  T   +L   D+ G A+TG GKT +FVLP+L  +  G A+        R P  L+L
Sbjct: 130 PIQAMTFDDILDGSDLVGRARTGQGKTLAFVLPILESITNGHAKESRKTGYGRPPSVLVL 189

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA+QV D+F+ YG++  LT   L GG  +  Q   L+RG D+++ TPGR+ DH  
Sbjct: 190 LPTRELASQVFDDFKVYGESLGLTSCCLYGGASYHPQEMSLKRGVDIVVGTPGRVKDHIE 249

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--QTLLFSATMTDELQKVSE 196
           RG + ++ ++  V+DEAD ML MGF+  ++ I   V      QTLLFSAT+ + ++++S 
Sbjct: 250 RGNINLSYLKFRVLDEADEMLRMGFVEDVELILGKVEDVSKVQTLLFSATLPEWVKQISS 309

Query: 197 NFLQNPKR---IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
            FL+  K+   +  N     +  + H  +   A  S    ++  +++   +    IIF  
Sbjct: 310 RFLKASKKTIDLVGNEKMKASTNVRHIILPCSA--SAIPQVIPDIIRCYSSGGRTIIFTE 367

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
           ++++   L   L        A+HG I Q  R   LS F+ G    +VA+++AARGLDI D
Sbjct: 368 KRESANELAGLLH----GARALHGEIQQSQREVTLSGFRSGKFLTLVATNVAARGLDIND 423

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           V  +   + P   E YIHR GRTGRAG  G A  L
Sbjct: 424 VQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 458


>gi|221053806|ref|XP_002258277.1| eukaryotic initiation factor [Plasmodium knowlesi strain H]
 gi|193808110|emb|CAQ38814.1| eukaryotic initiation factor, putative [Plasmodium knowlesi strain
           H]
          Length = 390

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 122/376 (32%), Positives = 197/376 (52%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++G+   ++  +   G+ KP+ IQ + I  +L   DV   +Q+GTGKT  F +  L  
Sbjct: 19  FENIGIDEGLLRGIYAYGFEKPSAIQQRGIKPILSGRDVILQSQSGTGKTCVFAVGALNC 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + +  +  ++   +IL PTRELA Q            ++T+   IGG       K L  G
Sbjct: 79  VNRNLSETQV---IILSPTRELAEQTQKVCLALADYIHVTIYCCIGGKKMSDDIKALNNG 135

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGRI    N   L    I+ LVIDEAD ML+ GF   + +I   +    Q +L
Sbjct: 136 VHIISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPNTQIVL 195

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  E+ +++  F+  P +I V     T E I+  FV+   +   K   L  L +S 
Sbjct: 196 SSATLPQEVLEITNKFMHRPVKILVKRDELTLEGIKQFFVSIEKE-QWKYETLADLYESL 254

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   ++FCN K  V  L   +++  F+VC +H  + Q  R  I+  F++   ++++++
Sbjct: 255 -TITQAVVFCNTKMKVDWLTKKMQEANFTVCKMHAGMSQSERDDIMLKFRQCKFRVLIST 313

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+  RGLD+ +V  V N+D+PN  E+YIHRIGR+GR GR G A   V  +DIK +  IE+
Sbjct: 314 DIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQ 373

Query: 363 LIEKKVDWLNGDLSSL 378
               ++D +  +++ L
Sbjct: 374 YYSTQIDEMPMNITEL 389


>gi|328784461|ref|XP_623668.3| PREDICTED: ATP-dependent RNA helicase p62-like isoform 1 [Apis
           mellifera]
          Length = 527

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/388 (31%), Positives = 205/388 (52%), Gaps = 24/388 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +      V+  +   G+ +PT IQ +  P+ +  H++ GIAQTG+GKT  ++LP +  
Sbjct: 117 FEEGNFPDHVMQCIRKQGFSEPTAIQAQGWPIAMSGHNMVGIAQTGSGKTLGYILPAIVH 176

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   +       P  LIL PTRELA Q+      +G    +    + GG P  +Q + LE
Sbjct: 177 ISSQQPLNHGDGPIALILAPTRELAQQIQKVTCSFGY---VRSTCIFGGAPKGSQARDLE 233

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G ++ I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 234 QGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 293

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALL 235
           L++SAT   E++ ++E +L +  ++ + + + +A     + ++ C      +  +K   L
Sbjct: 294 LMWSATWPKEVRNLAEEYLVDYTQLNIGSLTLSANHNILQIVDVC------EEDEKQTKL 347

Query: 236 QQLLQ-----SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           Q LLQ     S D  K  IIF   KK V ++  ++ + G+    IHG+  Q  R  +LS+
Sbjct: 348 QNLLQEISNVSPDGGKT-IIFVETKKKVESITKTIRRYGWPAVCIHGDKSQLERDFVLSD 406

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           + +G +  +  + + +  LD+ DV +V NFD PN +E+YIHRIGRTGR+   G ++    
Sbjct: 407 WNKGKVHYIYFNKIVS--LDVDDVKYVINFDYPNSSEDYIHRIGRTGRSNNSGTSYAFFT 464

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            ++ +   ++  ++ +    +N  L  L
Sbjct: 465 PQNGRQAKSLVNVLREAKQIINPKLMEL 492


>gi|291221307|ref|XP_002730663.1| PREDICTED: RNA helicase p47-like [Saccoglossus kowalevskii]
          Length = 454

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 120/374 (32%), Positives = 194/374 (51%), Gaps = 7/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L+ +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGKT S+++P+L 
Sbjct: 65  EFEDYCLNRELLMGIFEMGWEKPSPIQEESIPVTLSGRDILARAKNGTGKTGSYLIPILE 124

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  ++    ++L PTRELA Q +   ++  K+    V +  GG   +    +L  
Sbjct: 125 RIDSSKDYIQ---AMVLVPTRELALQTSHTCKQLSKHLGARVMVTTGGTNLKDDIMRLYE 181

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD  ++G   M+    L +DEAD++L   F   +    + +P  RQ +
Sbjct: 182 NVHIVIATPGRILDLMDKGVAKMSKCAFLCLDEADKLLSQDFKNMLDRCINFLPNDRQIM 241

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +Q+     L  P  I +     T + I   +   + Q  +K   L  L  S
Sbjct: 242 LFSATFPLSVQEFMTRHLNKPYEINL-MDELTLKGITQYYA--FVQEKQKVHCLNTLF-S 297

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+S   IH  + Q  R +I  +F+ G  + +V 
Sbjct: 298 KLQINQSIIFCNSTQRVELLARKITELGYSCFYIHAKMRQEHRNRIFHDFRNGACRNLVC 357

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  IE
Sbjct: 358 SDLFTRGIDIQAVNVVINFDFPKHAETYLHRIGRSGRYGHLGIALNLITYEDRFSLYQIE 417

Query: 362 KLIEKKVDWLNGDL 375
           + +  ++  + G +
Sbjct: 418 RELGTEIKPIPGSI 431


>gi|296807429|ref|XP_002844208.1| eukaryotic initiation factor 4A [Arthroderma otae CBS 113480]
 gi|238843691|gb|EEQ33353.1| eukaryotic initiation factor 4A [Arthroderma otae CBS 113480]
          Length = 395

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 128/367 (34%), Positives = 207/367 (56%), Gaps = 5/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L+ +++  V   G+ +P+ IQ + I  V++  DV   AQ+GTGKTA+F    ++ 
Sbjct: 25  FDSMNLNAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATF---SISA 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    ++  + LIL PTRELA Q+       G   ++     IGG       K L+ G
Sbjct: 82  LQKVDTNLKACQALILAPTRELAQQIQKVVVSIGDFMSVDCHACIGGTNVREDMKALQDG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I   +P + Q +L
Sbjct: 142 PQVVVGTPGRVHDMIQRRVLKTDHIKMFVLDEADEMLSRGFTEQIYDIFQFLPQSTQVVL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 202 LSATMPPDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 260

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L+ + F+V A+HG+++Q  R  I+  F+ G+ ++++A+
Sbjct: 261 -TITQAVIFCNTRRKVDWLTDKLQARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIAT 319

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 320 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 379

Query: 363 LIEKKVD 369
               +++
Sbjct: 380 FYSTQIE 386


>gi|147899364|ref|NP_001082035.1| RNA helicase II/Gu [Xenopus laevis]
 gi|16975508|gb|AAG22819.2|AF302423_1 RNA helicase II/Gu [Xenopus laevis]
          Length = 759

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 128/373 (34%), Positives = 201/373 (53%), Gaps = 16/373 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+   LS + +  +   G     PIQ KT        DV   A+TGTGKT SF +P++ 
Sbjct: 180 DFSKFPLSKETIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVE 239

Query: 62  ILEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L + +   AR R PR +IL PTRELA Q+ +      K   L V+   GG P++ Q   
Sbjct: 240 KLNEDQQPLARGRAPRVIILTPTRELAIQITNEIRSITKK--LKVSCFYGGTPYQQQVFA 297

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV---- 174
           ++ G D L+ TPGR+ D     +L +  ++ +V+DE D M DMGF   ++ I S+     
Sbjct: 298 IKDGIDFLVGTPGRVRDLVQNYRLDLTTLKHVVLDEVDMMFDMGFSEQVEEILSVRYKAD 357

Query: 175 -PFTRQTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSK 230
                QTLLFSAT  D +  +++ +++   ++I++  +     A T+EH  +A     S+
Sbjct: 358 PEENPQTLLFSATCPDWMYNMAKKYMRKQFEKIDLIGHRSQKAATTVEH--LAIECTRSQ 415

Query: 231 KCALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K A+L  L+Q    +    IIFC+ K     L  S      S  ++HG++ Q+ R  +L 
Sbjct: 416 KAAVLGDLVQVYSGSHGKTIIFCDSKLEAHTLATSCGSLKQSAKSLHGDLQQKEREVVLK 475

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F++GT ++++A+++AARGLDIP+V  V  +  P  A+ Y+HR GRTGRAGR G   +L 
Sbjct: 476 GFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCISLY 535

Query: 350 AKEDIKHIDAIEK 362
              +  ++  +E+
Sbjct: 536 EPWERHYLRNVER 548


>gi|15964184|ref|NP_384537.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
           1021]
 gi|307301327|ref|ZP_07581089.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
 gi|15073360|emb|CAC41868.1| Putative ATP-dependent RNA helicase [Sinorhizobium meliloti 1021]
 gi|306903783|gb|EFN34370.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 630

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 195/346 (56%), Gaps = 6/346 (1%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEK 65
           G++P +  A+   GY   TP+Q   +   L   D    AQTG+GKT +F L +  T++  
Sbjct: 6   GIAPAIAEALAKRGYETLTPVQQAMLDPSLGTADALVSAQTGSGKTVAFGLALAPTLIGS 65

Query: 66  GR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            R  A+   P  L++ PTRELA QV    +   +    T+A  +GG+   ++ + LERGA
Sbjct: 66  ARKFAQAGAPLALVIAPTRELALQVMRELDWLYEMAGATIASCVGGMDMRSERRTLERGA 125

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            +++ TPGR+ DH  RG L ++ ++ +V+DEAD MLD+GF   ++ I    P  R+TL+F
Sbjct: 126 HIVVGTPGRLCDHIRRGSLDISGLKAVVLDEADEMLDLGFREDLEFILEASPADRRTLMF 185

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT+   +  +++++ ++  RI V +       IE+  +   A   ++ A++  L   + 
Sbjct: 186 SATVPRSIATLAKSYQRDAVRIGVTSEQKQHGDIEYRSL-LVAPSDRENAIINVLRFYE- 243

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +N I+FC+ +  V +L      +GFSV A+ G + Q  R   L   ++G  ++ +A+D
Sbjct: 244 -ARNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQNERTHALQAMRDGRARVCIATD 302

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +AARG+D+P +  V + D+P  ++  +HR GRTGRAG+ G +  +V
Sbjct: 303 VAARGIDLPGLELVIHADLPTNSDTLLHRSGRTGRAGQKGVSALIV 348


>gi|227510196|ref|ZP_03940245.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227190401|gb|EEI70468.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 453

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/352 (35%), Positives = 192/352 (54%), Gaps = 10/352 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  L P ++ A+ D  + KPTP+Q K IP++LQ  DV G + TG+GKT +F+LP+   
Sbjct: 4   FSEFHLKPFILNALDDLKFTKPTPVQEKLIPVILQHRDVVGQSATGSGKTHAFLLPIFND 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKLE 120
           ++    ++   + +I  P+RELA Q+ D  ++  K     +++   +GG   + Q  KL+
Sbjct: 64  ID---PKIDEVQAVITTPSRELAYQILDAAKQLAKFSPDPISIGSYVGGTDKKRQEDKLK 120

Query: 121 RGADVLIC-TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    LI  TPGR+ D    G L ++    LVIDEAD  LDMGF+  + +I +      Q
Sbjct: 121 KEQPQLIVGTPGRVWDLIKNGGLDVHTASKLVIDEADMTLDMGFLDVVDHIAASFGKHVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++FSAT+  ++    + ++ NP   E+   S  + TI++  ++T  Q   K  L+  LL
Sbjct: 181 MMVFSATIPQKITVFLKKYMDNPVIEEIPVSSIISPTIDNWLISTKGQ--DKNQLIYHLL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     +IF N +K V  L   L  QG  V  +HG +  R R +I+   K    Q +
Sbjct: 239 TVGEPYLV-LIFANTRKRVEELTEYLRGQGLKVAMVHGGVKPRERKQIMKRIKNLDFQFV 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNR-AENYIHRIGRTGRAGRHGKAFTLVA 350
           VA+DLAARG+DI  V  V N D+P    E +IHR+GRTGR G  G + TL +
Sbjct: 298 VATDLAARGIDIEGVSQVINDDIPTEDLEFFIHRVGRTGRNGMSGTSITLYS 349


>gi|241953695|ref|XP_002419569.1| pre-mRNA-processing ATP-dependent RNA helicase, putative [Candida
           dubliniensis CD36]
 gi|223642909|emb|CAX43164.1| pre-mRNA-processing ATP-dependent RNA helicase, putative [Candida
           dubliniensis CD36]
          Length = 873

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 136/406 (33%), Positives = 212/406 (52%), Gaps = 30/406 (7%)

Query: 1   MDFADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           + ++ L L   +   + D   + KP+ IQ + +P +L   DV GIA+TG+GKT S+VLPM
Sbjct: 281 LKWSHLALPTNLSSVIHDKLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPM 340

Query: 60  LTILEKGR--ARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEA 114
           L  +   +     + P  LIL PTRELA Q+     NF K  KN  L V    GG   E 
Sbjct: 341 LRHIHDQQFLKDNQGPIGLILSPTRELALQIEKEILNFTK--KNNYLRVCCCYGGSSIEN 398

Query: 115 QNKKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNIT 171
           Q  +L++G ++++ TPGR++D    N G++  +     +V+DEADRM D+GF P +  I 
Sbjct: 399 QINELKKGVEIIVGTPGRVIDLLAANSGRVTNLKRCTFVVLDEADRMFDLGFEPQVNKIF 458

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           + +   RQT+LFSAT   +++ +++  L +P  I V   S  A  I+   +       ++
Sbjct: 459 TQIRPDRQTVLFSATFPRKMETLAKQILADPVVIIVGGISVVAPEIKQDVILFETSLEEQ 518

Query: 232 CALLQQLLQS-QDTMKNG---------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
               QQ ++   D + N          ++F  ++ +   L  +L    +   AIHG  DQ
Sbjct: 519 DKYKQQRIEKLHDILSNYQIERPDSKILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQ 578

Query: 282 RSRMKILSNFK--EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
             R   +  F   +  I +++A+ +AARGLD+ ++G V NFD PN  E+Y+HR+GRTGRA
Sbjct: 579 MDRKYAIKEFASMDSGINILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRA 638

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
           G  G A T V+    K +  +       V  L    S ++P LE+I
Sbjct: 639 GAKGNAVTFVSSSQPKEVFNL-------VKALKLSHSDIDPKLEEI 677


>gi|81295381|ref|NP_001032278.1| nucleolar RNA helicase 2 [Rattus norvegicus]
 gi|123780397|sp|Q3B8Q1|DDX21_RAT RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
           protein 21; AltName: Full=Gu-alpha; AltName:
           Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
           RNA helicase II; AltName: Full=RH II/Gu
 gi|77748254|gb|AAI05879.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Rattus norvegicus]
 gi|149038676|gb|EDL92965.1| rCG22008, isoform CRA_b [Rattus norvegicus]
          Length = 782

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/335 (37%), Positives = 191/335 (57%), Gaps = 27/335 (8%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG---RARVRMPRTLILEPTR 82
           PIQ KT   V    D+   A+TGTGKT SF +P++  L+ G   R R R P+ L+L PTR
Sbjct: 207 PIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPTR 266

Query: 83  ELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142
           ELA QV+ +F    K   L+VA   GG P+  Q +++  G D+L+ TPGRI DH   GKL
Sbjct: 267 ELANQVSKDFSDITKK--LSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKL 324

Query: 143 LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR------QTLLFSATMTDELQKVSE 196
            +  ++ +V+DE D+MLDMGF   ++ I   V + +      QTLLFSAT    +  V++
Sbjct: 325 DLTKLKHVVLDEVDQMLDMGFADQVEEIL-CVAYKKDSEDNPQTLLFSATCPHWVFNVAK 383

Query: 197 NFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN-GIIFC 252
            ++++  +++++        A T+EH  +A    ++++ A++  +++     +   IIFC
Sbjct: 384 KYMKSTYEQVDLIGKKTQKAAITVEH--LAIKCHWTERAAVIGDVIRVYSGHQGRTIIFC 441

Query: 253 NQKKNVV----NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
             KK+      N C   + Q     ++HG+I Q+ R   L  F+ G   ++VA+++AARG
Sbjct: 442 ETKKDAQELSQNTCIKQDAQ-----SLHGDIPQKQREITLKGFRNGNFGVLVATNVAARG 496

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           LDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 497 LDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTG 531


>gi|196006399|ref|XP_002113066.1| hypothetical protein TRIADDRAFT_26030 [Trichoplax adhaerens]
 gi|190585107|gb|EDV25176.1| hypothetical protein TRIADDRAFT_26030 [Trichoplax adhaerens]
          Length = 491

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 129/374 (34%), Positives = 206/374 (55%), Gaps = 12/374 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  LS +   A+ +A Y  PT IQ ++IP+ L   DV G A+TG+GKT +F++P+L 
Sbjct: 8   EFTDFPLSSRTQIALKEAKYEIPTKIQKESIPIALSGRDVLGAAKTGSGKTLAFIIPILE 67

Query: 62  IL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L ++  + +     +I+ PTRELA Q  +   K GK ++++  L+IGG   E + + + 
Sbjct: 68  LLWQQKWSSMDGIGAIIISPTRELAYQTFEVLRKIGKKHDMSAGLVIGGKSMEEEQRSI- 126

Query: 121 RGADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              ++++ TPGR+L H +       NN+++LV+DEADR+LDMGF   +  I   +P  RQ
Sbjct: 127 IATNIIVSTPGRLLQHMDETPNFDCNNLQLLVLDEADRILDMGFADTMNAILENIPDERQ 186

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           TLLFSAT T  ++ ++   L  P  + V  N+ SST   ++  ++    Q   K  LL  
Sbjct: 187 TLLFSATQTKSVKDLARLSLNEPAYVSVHENSTSSTPSRLKQSYMVCELQ--DKMNLLFS 244

Query: 238 LLQSQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +++    K  I    C Q K V      L + G  + A++G   Q  RM I + F   +
Sbjct: 245 FIRNHIKSKILIFMSSCKQVKFVYEAFRRL-RPGIPLLALYGKQKQLKRMAIYNEFCRRS 303

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++ A+D+AARGLD P V  V   D P  A  YIHR GRT R  + G+A  ++   + +
Sbjct: 304 EAVLFATDIAARGLDFPAVDWVVQLDCPEDANTYIHRAGRTARYQKDGQALLVLLPSEEE 363

Query: 356 HIDAIEKLIEKKVD 369
            +  +E+L +KK++
Sbjct: 364 GM--LEELKKKKLN 375


>gi|157121423|ref|XP_001659898.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108874627|gb|EAT38852.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 784

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 118/356 (33%), Positives = 193/356 (54%), Gaps = 4/356 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  ++ A+L  GY  PTPIQ KTIPL+L+  DV  +A+TG+GKT  F++P+   
Sbjct: 40  FQAMGLSMPILKAILKMGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTGCFLIPLFEK 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K R      R L+L PTRELA Q     ++ GK  +L   L++GG   ++Q   +   
Sbjct: 100 L-KQREIKSGARALVLTPTRELAIQTFKFIKQLGKFTDLKTILVLGGDSMDSQFAAIHTL 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR L       L +++++  V DEADR+ +MGF   +      +P  RQ +L
Sbjct: 159 PDIIVATPGRFLHLCVEMDLKLSSVQYCVFDEADRLFEMGFGEQLTETLRRLPEARQMVL 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +   ++  L +P  I ++  S   E ++  FV  Y +  ++ A L  LL+  
Sbjct: 219 FSATLPKLMVDFAKAGLSDPTLIRLDVESKIPEALDLKFV--YCRPDERYATLLILLREV 276

Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F   + +V  +   L + G     +  ++D  +R    + F    + ++V 
Sbjct: 277 IPRSAQTVLFAGTQHHVELISLILTRAGIPNTYVFSSLDASARKINTAKFTMKKVNVLVV 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +D+AARGLDIP + +V N   P + + ++HR+GR  RAGR G A+ + + +DI H+
Sbjct: 337 TDIAARGLDIPSLDYVVNVHFPGKPKLFVHRVGRCARAGRSGTAYNIFSNDDIAHM 392


>gi|242016149|ref|XP_002428698.1| predicted protein [Pediculus humanus corporis]
 gi|212513369|gb|EEB15960.1| predicted protein [Pediculus humanus corporis]
          Length = 513

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 196/370 (52%), Gaps = 27/370 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60
           DF  +     ++ A+   G ++PTPIQI+ +P V+  RHD   + +    +  SF     
Sbjct: 86  DFKGMKFPEPLLVALQKRGIMRPTPIQIQGLPTVIWTRHDWHRVYRKR--ENISFRSSTH 143

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY------NLTVALLIGGIPFEA 114
            +L          R+LI+ P+RELA Q  D F+ Y K+        +   L IGG+P   
Sbjct: 144 NVLPG-------TRSLIICPSRELAKQTHDIFQYYCKSLLESGFPEIRCCLGIGGVPVSE 196

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             + + RG  +L+ TPGR++D  ++  + ++    L +DEADRM+DMGF   ++ I S  
Sbjct: 197 SLEVIARGLHILVATPGRLMDMLDKKLIRLDVCRYLCMDEADRMIDMGFEEDVRTIFSFF 256

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTLLFSATM  ++Q  + + L  P  I +N   + A ++       Y +   K   
Sbjct: 257 KGQRQTLLFSATMPKKIQNFARSALVKP--ITINVGRAGAASMNVIQEVEYVKQEAKVVY 314

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L + LQ   T    +IF  +K++V  +   L  +G    AIHG  DQ  R + +  F+ G
Sbjct: 315 LLECLQK--TAPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERSRSVEAFRSG 372

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-- 352
              ++VA+D+A++GLD PDV HV N+D+P+  ENY+HRIGRTGR+ + G A T V K   
Sbjct: 373 KKDVLVATDVASKGLDFPDVQHVINYDMPDDVENYVHRIGRTGRSEKTGIATTFVNKAND 432

Query: 353 -----DIKHI 357
                D+KH+
Sbjct: 433 ESVLLDLKHL 442


>gi|195474915|ref|XP_002089735.1| GE19250 [Drosophila yakuba]
 gi|194175836|gb|EDW89447.1| GE19250 [Drosophila yakuba]
          Length = 527

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 142/441 (32%), Positives = 231/441 (52%), Gaps = 14/441 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +V  +   G    TPIQ K IP +L   D  G A+TG+GKT +F LP   I
Sbjct: 9   FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALP---I 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+          L+L PT ELA Q+++ F   G+   + V ++ GG     +++KL + 
Sbjct: 66  LERLSEEPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQR 125

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++  PGR+ DH         +N++ LV+DEADRML+  F   +  I   +P TRQ L
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKTRQNL 185

Query: 182 LFSATMTDELQKVS-ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            FSATM D +++ S     ++      ++  +T +T++  ++   A Y +   L++ L +
Sbjct: 186 FFSATMKDFIKESSIFPIARDCFEWSQDSDVATVDTLDQRYLLC-ADYDRDMVLIEALRK 244

Query: 241 SQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            ++  +N   +IF N KK    L  +L+        +HG + Q+ R+  LS FK   I+ 
Sbjct: 245 YREENENANVMIFTNTKKYCQLLSMTLKNMDIDNVCLHGFMRQKERVAALSRFKSNQIRT 304

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHI 357
           ++A+D+AARGLDIP V  V N  +P   + YIHR+GRT RAGR G + ++     D++ +
Sbjct: 305 LIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELL 364

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            AIE+ I  K+     D       +E+I   Q N  R+ + +   +  FD R +NY  + 
Sbjct: 365 GAIEEEINTKLTEHPID----QRMVERI-FMQVNVTRRESEMQLDNNDFDERAQNYRRKT 419

Query: 418 SHIPLKESEKISKLQQDIQEN 438
             +  K+ +++  L +  Q++
Sbjct: 420 WIMEGKDPDQMEALYRKKQKD 440


>gi|115403005|ref|XP_001217579.1| hypothetical protein ATEG_08993 [Aspergillus terreus NIH2624]
 gi|121734401|sp|Q0CBE1|DHH1_ASPTN RecName: Full=ATP-dependent RNA helicase dhh1
 gi|114189425|gb|EAU31125.1| hypothetical protein ATEG_08993 [Aspergillus terreus NIH2624]
          Length = 509

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 191/362 (52%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P  
Sbjct: 47  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIP-- 104

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE+   +    + LIL PTRELA Q +   +  GK+  + V +  GG        +L 
Sbjct: 105 -TLERINPKSTKTQALILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRLN 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 164 DAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  ++NP  I +     T   I   +   + +  +K   L  L  
Sbjct: 224 MLFSATFPLIVKSFKDKHMRNPYEINL-MDELTLRGITQYYA--FVEEKQKVHCLNTLF- 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q+ R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKI 399

Query: 361 EK 362
           E+
Sbjct: 400 EQ 401


>gi|119025641|ref|YP_909486.1| ATP-dependent RNA helicase [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765225|dbj|BAF39404.1| possible ATP-dependent RNA helicase [Bifidobacterium adolescentis
           ATCC 15703]
          Length = 728

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/376 (32%), Positives = 186/376 (49%), Gaps = 35/376 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+   +V  +   G     PIQ  T+P  L   D+ G  +TG+GKT +F +P++  
Sbjct: 30  FAELGVPGPLVRVLAADGKKTAFPIQADTLPDSLAGRDILGRGRTGSGKTLAFSIPLVAR 89

Query: 63  L---------------------EKGRARVRM-------PRTLILEPTRELAAQVADNFEK 94
           L                      KG A  R        PR L+L PTRELA Q+ D    
Sbjct: 90  LGEVDADEYENMSQFRHEVEQVRKGHAEERRADDFLPHPRGLVLAPTRELANQINDVLMP 149

Query: 95  YGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDE 154
             + Y +T   + GG+ +  Q + L  GAD+++  PGR+ D   +  L +  +E+ VIDE
Sbjct: 150 LAQMYGMTTTTVYGGVRYARQIRDLRAGADIVVACPGRLEDLLEQHALTLEKVEVAVIDE 209

Query: 155 ADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA 214
           AD M DMGF+P ++ +   V F  Q +LFSAT+   + +V   FL +PK   V++ ++  
Sbjct: 210 ADEMADMGFLPPVKRLLGQVSFDAQVMLFSATLDHGVDEVVNTFLTDPKIHSVDSATAAV 269

Query: 215 -ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            E   H F  T      +  L++ L   +      I+F   K     L   L K G    
Sbjct: 270 DEMTHHVFETTQGD---RHELVRTLASGKGRR---ILFTRTKFQTQKLAKDLTKNGIPAA 323

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            +HGN+ Q  R + L+ F+ G + +MVA+D+AARG+D+  V  V   + P   ++++HR 
Sbjct: 324 ELHGNLSQNQRDRNLAAFESGDVNVMVATDVAARGIDVSGVELVVQVEPPEDPKSFLHRS 383

Query: 334 GRTGRAGRHGKAFTLV 349
           GRT RAG  G   T+V
Sbjct: 384 GRTARAGHSGDVVTIV 399


>gi|259485547|tpe|CBF82660.1| TPA: ATP-dependent RNA helicase (Eurofung) [Aspergillus nidulans
           FGSC A4]
          Length = 498

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 191/362 (52%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P  
Sbjct: 39  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIP-- 96

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE+   +    + LIL PTRELA Q +   +  GK+  + V +  GG        +L 
Sbjct: 97  -TLERINPKSTKTQALILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRLN 155

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 156 DAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 215

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  ++NP  I +     T   I   +   + +  +K   L  L  
Sbjct: 216 MLFSATFPMIVKSFKDRHMRNPYEINL-MDELTLRGITQYYA--FVEEKQKVHCLNTLF- 271

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q+ R ++  +F+ G  + +V
Sbjct: 272 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLV 331

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 332 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKI 391

Query: 361 EK 362
           E+
Sbjct: 392 EQ 393


>gi|67524949|ref|XP_660536.1| hypothetical protein AN2932.2 [Aspergillus nidulans FGSC A4]
 gi|74657405|sp|Q5B948|IF4A_EMENI RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|40744327|gb|EAA63503.1| hypothetical protein AN2932.2 [Aspergillus nidulans FGSC A4]
          Length = 421

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 210/376 (55%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P+++  V   G+ +P+ IQ + I  +++ +DV   AQ+GTGKTA+F    ++ 
Sbjct: 50  FDSMELKPELLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATF---SISA 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    V+  + LI+ PTRELA Q+       G   N+     IGG         L  G
Sbjct: 107 LQKLDPNVKACQALIVAPTRELAQQIQKVVIAIGDFMNIQCHACIGGTAVRDDMNALREG 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRI D   R  L  + +++ ++DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 167 PQIVVGTPGRIHDMIQRRVLKTDQMKMFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 227 LSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 285

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A+
Sbjct: 286 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIAT 344

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 345 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 404

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 405 FYSTQIEEMPMNVADL 420


>gi|291446333|ref|ZP_06585723.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|291349280|gb|EFE76184.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
          Length = 507

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 119/347 (34%), Positives = 181/347 (52%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L +   +  A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 135 FGELEMPAPLKQALATEGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 194

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  + P  L+L PTRELA QV D    Y ++  L +A ++GG+    Q   L  G
Sbjct: 195 TAGRRADAKRPLALVLVPTRELAQQVTDALTPYARSLKLRLATVVGGMSIGRQASALRGG 254

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D   R    ++ + + V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 255 AEVVVATPGRLKDLIERRDCKLDRVTVTVLDEADQMADMGFMPQVTELLDQVNPDGQRML 314

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L++P    V+  +    T+EH  +  Y Q + K A   ++    
Sbjct: 315 FSATLDRNVDLLVRTYLKDPVVHSVDPAAGAVTTMEHHVL--YVQGADKYATTTEIAARD 372

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   I+F + K  V  L   L   G    A+HG   Q  R + L  FK G + ++VA+
Sbjct: 373 GRV---IMFLDTKHAVDKLTDHLLHSGVRAAALHGGKSQPQRTRTLDRFKTGQVTVLVAT 429

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV
Sbjct: 430 NVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLV 476


>gi|37748194|gb|AAH59237.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
          Length = 851

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/335 (37%), Positives = 191/335 (57%), Gaps = 27/335 (8%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG---RARVRMPRTLILEPTR 82
           PIQ KT   V    D+   A+TGTGKT SF +P++  L+ G   R R R P+ L+L PTR
Sbjct: 283 PIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPTR 342

Query: 83  ELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142
           ELA QV+ +F    K   L+VA   GG P+  Q +++  G D+L+ TPGRI DH   GKL
Sbjct: 343 ELANQVSKDFSDITKK--LSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKL 400

Query: 143 LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR------QTLLFSATMTDELQKVSE 196
            +  ++ +V+DE D+MLDMGF   ++ I   V + +      QTLLFSAT    +  V++
Sbjct: 401 DLTKLKHVVLDEVDQMLDMGFADQVEEIL-CVAYKKDSEDNPQTLLFSATCPHWVFNVAK 459

Query: 197 NFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN-GIIFC 252
            ++++  +++++        A T+EH  +A    ++++ A++  +++     +   IIFC
Sbjct: 460 KYMKSTYEQVDLIGKKTQKAAITVEH--LAIKCHWTERAAVIGDVIRVYSGHQGRTIIFC 517

Query: 253 NQKKNVV----NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
             KK+      N C   + Q     ++HG+I Q+ R   L  F+ G   ++VA+++AARG
Sbjct: 518 ETKKDAQELSQNTCIKQDAQ-----SLHGDIPQKQREITLKGFRNGNFGVLVATNVAARG 572

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           LDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 573 LDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTG 607


>gi|169779864|ref|XP_001824396.1| ATP-dependent RNA helicase dhh1 [Aspergillus oryzae RIB40]
 gi|91206577|sp|Q2U5A2|DHH1_ASPOR RecName: Full=ATP-dependent RNA helicase dhh1
 gi|83773136|dbj|BAE63263.1| unnamed protein product [Aspergillus oryzae]
          Length = 511

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 191/362 (52%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P  
Sbjct: 47  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIP-- 104

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE+   +    + LIL PTRELA Q +   +  GK+  + V +  GG        +L 
Sbjct: 105 -TLERINPKSTKTQALILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRLN 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 164 DAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  ++NP  I +     T   I   +   + +  +K   L  L  
Sbjct: 224 MLFSATFPLIVKSFKDKHMRNPYEINL-MDELTLRGITQYYA--FVEEKQKVHCLNTLF- 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q+ R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKI 399

Query: 361 EK 362
           E+
Sbjct: 400 EQ 401


>gi|326478704|gb|EGE02714.1| ATP-dependent RNA helicase DHH1 [Trichophyton equinum CBS 127.97]
          Length = 441

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 119/353 (33%), Positives = 187/353 (52%), Gaps = 7/353 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +   ++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFEDFYIKRDLMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E+   ++   + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 107 ---ERTNPKIAKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLN 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   ++     V+DEAD++L   F P I+ + +  P  RQ 
Sbjct: 164 DTVHIIVGTPGRILDLASKGVADLSECTTFVMDEADKLLSPEFTPVIEQLLTFHPKDRQV 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  ++NP  I +     T   I   +   + +  +K   L  L  
Sbjct: 224 MLFSATFPIIVKTFKDKHMRNPYEINL-MDELTLRGITQYYA--FVEERQKVHCLNTLF- 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDD 392


>gi|294657726|ref|XP_460025.2| DEHA2E16632p [Debaryomyces hansenii CBS767]
 gi|218511815|sp|Q6BP45|ROK1_DEBHA RecName: Full=ATP-dependent RNA helicase ROK1
 gi|199432904|emb|CAG88281.2| DEHA2E16632p [Debaryomyces hansenii]
          Length = 550

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 128/407 (31%), Positives = 214/407 (52%), Gaps = 17/407 (4%)

Query: 3   FADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           F DL     L  K++  ++DAG+ +PTPIQ + IP+ L+  D+   A TG+GKT +F++P
Sbjct: 112 FEDLIGRYKLDKKLLSNLIDAGFTEPTPIQDEAIPISLEGRDLIACAPTGSGKTLAFLIP 171

Query: 59  MLTILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           ++  + +    V+    R LI+ PT ELA Q+        K   + + +L   +  +  N
Sbjct: 172 LVQTILQSNPNVKNYGIRGLIISPTNELAVQIFQELNTMTKGKKMKIGILSKQLANKINN 231

Query: 117 KKLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           K +     D+L+ TP R++D      + ++ +E LVIDE D++ D GF+     I S   
Sbjct: 232 KIINSSKYDILVSTPLRLIDSIKNETISLSKVEQLVIDETDKLFDQGFVEQTDEILSNCT 291

Query: 176 FTR-QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
            T+ +  +FSAT+   +++++++ +++P R+ +    + + TIE   V T  +  K  A+
Sbjct: 292 NTKLRKSMFSATIPSGVEEMAQSIMKDPIRVIIGHKEAASNTIEQKLVFTGNEEGKLLAI 351

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            +Q++Q  +     IIF         L H L     +V  IH     + R +++  FK G
Sbjct: 352 -RQMIQQGEFKPPIIIFLQSITRAKALFHELLYDRLNVDVIHAERTPKQRDEVIKRFKSG 410

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I +++ +D+ ARG+D   V  V N+DVP  A+ Y+HRIGRTGR G+ GKA T   KED 
Sbjct: 411 DIWVLITTDVIARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDD 470

Query: 355 KHIDAIEKLIEKK------VDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           K +  I  ++++         WL  D+  L+   EK D+ +H   RK
Sbjct: 471 KAVKPIINVMKQSGCESGYSGWLE-DMHKLSKN-EKKDVKKHEIKRK 515


>gi|293628906|dbj|BAJ04860.1| vasa homolog [Cynops pyrrhogaster]
          Length = 717

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 132/391 (33%), Positives = 211/391 (53%), Gaps = 25/391 (6%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRA----RVRMP 73
           AGY K TP+Q  +IP+VL + D+   AQTG+GKTA+F+LP+L  +++ G A     ++ P
Sbjct: 293 AGYAKLTPVQKHSIPIVLAKRDLMACAQTGSGKTAAFLLPILAHMMQDGVAPHSLDLQEP 352

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
             +I+ PTREL  Q+  +  K+     +   ++ GG       +++ +G ++L  TPGR+
Sbjct: 353 EAIIVAPTRELINQIFLDARKFAYGTCIKPVVVYGGTQTFHSLRQIYQGCNILCATPGRL 412

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSATMTD 189
           LD   R K+ +  +  LV+DEADRMLDMGF P ++ + +         RQTL+FSAT  +
Sbjct: 413 LDIIRREKIGLAKLRYLVLDEADRMLDMGFGPDMKILITSPGMPSKEERQTLMFSATFPE 472

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
            +Q +++ FL++     V      A +     +    Q+ KK  L++ +LQ   T +  +
Sbjct: 473 RIQSLAKEFLKSDYLFVVVGQVGGACSDVEQIIIPVGQHGKKDKLVE-ILQGLGTERT-M 530

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           +F   KK    L   L ++     +IHG+  Q+ R + L++F+ G   ++VA+++AARGL
Sbjct: 531 VFVKTKKKADYLTTLLCQENVLATSIHGDRLQKEREEALADFRFGKCNVLVATNVAARGL 590

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           DI +V HV  FD+ +  E Y+HRIGRTGR G  GKA T    +D +       L++   D
Sbjct: 591 DIENVQHVIIFDLSDNIEEYVHRIGRTGRCGNVGKAITFFDSDDNEDRTVARSLVKVLSD 650

Query: 370 -------WL-------NGDLSSLNPPLEKID 386
                  WL       +G  SS+      +D
Sbjct: 651 AQQEVPVWLEEIAFSASGTFSSIGSTFASVD 681


>gi|307191878|gb|EFN75297.1| Probable ATP-dependent RNA helicase DDX5 [Harpegnathos saltator]
          Length = 465

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 129/401 (32%), Positives = 204/401 (50%), Gaps = 25/401 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP +  
Sbjct: 49  FEEGGFPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 108

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           I  + R +R   P  LIL PTRELA Q+      +G +  +    + GG P   Q + LE
Sbjct: 109 INHQPRLSRNDGPIALILAPTRELAQQIQQVASDFGMSSQVRNTCIFGGAPKGPQARDLE 168

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 169 RGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQT 228

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E++ ++E FL +  +I + +    A       V    +Y K+  L++ L +
Sbjct: 229 LMWSATWPKEVRNLAEEFLTDYIQINIGSLQLAANHNILQIVDVCEEYEKEGKLMKLLEE 288

Query: 241 SQDTMKN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +  +N  IIF   K+ V ++  ++ + G+    IHG+  Q+ R  +L++         
Sbjct: 289 ISNEPENKTIIFVETKRKVDDITRAINRYGWQAIGIHGDKSQQERDYVLNH--------- 339

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
                      + DV  V N D P+ +E+Y+HRIGRTGR+ R G A+      +      
Sbjct: 340 -----------VEDVKFVINLDYPSNSEDYVHRIGRTGRSQRTGTAYAFFTPGNAHKASD 388

Query: 360 IEKLIEKKVDWLNGDLSSL--NPPLEKIDIAQHNHARKNNP 398
           + +++E+    +N  L  L  NP + K  I    +  K+ P
Sbjct: 389 LIQVLEEAKQVVNPKLYELSRNPGIYKSGITGGGYGAKSFP 429


>gi|326389016|ref|ZP_08210598.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206616|gb|EGD57451.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 601

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/377 (32%), Positives = 201/377 (53%), Gaps = 16/377 (4%)

Query: 1   MDFADLGLSPKVVC-AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M F+ L   P ++  A+ + GY +PTP+Q   +       D+   AQTG+GKT +F + M
Sbjct: 15  MPFSSL---PNLISQALAEQGYAEPTPVQAAVLGAEAHDRDLLVSAQTGSGKTVAFGVAM 71

Query: 60  LT-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
              +L +     R P  L++ PTRELA QV+           + +   +GG+    + + 
Sbjct: 72  AARLLSEDNGFNRAPGALVIAPTRELALQVSRELTWLFGKAGIRITTCVGGMDAARERRT 131

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G  V++ TPGR+ DH  RG L ++ +  +V+DEAD MLDMGF   ++ I    P  R
Sbjct: 132 LAQGTHVVVGTPGRLRDHLERGALDLSALHHVVLDEADEMLDMGFREDLEEILEATPEGR 191

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ-- 236
           +TLLFSATM   +  ++  + ++  RI     S+ ++ + H  + TY   +   A ++  
Sbjct: 192 RTLLFSATMPKPIVALARRYQRDALRI-----STVSDNVGHGDI-TYQAVAVSPADIENA 245

Query: 237 --QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
              LL+  +  +  I+FC  + NV +L  SL ++GF+  A+ G   Q  R   L   ++G
Sbjct: 246 VINLLRFHEA-ETAILFCATRDNVRHLHSSLIERGFAAVALSGEHSQNERNNALQALRDG 304

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             ++ VA+D+AARG+DIP +  V + +VP  AE   HR GRTGRAGR G A  +V     
Sbjct: 305 RARICVATDVAARGIDIPSLSLVIHVEVPRDAEVLQHRSGRTGRAGRKGVAVMIVPYPRR 364

Query: 355 KHIDAIEKLIEKKVDWL 371
           + ++ + ++     +W+
Sbjct: 365 RRVEGMLRIARVTAEWV 381


>gi|322516110|ref|ZP_08069045.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           vestibularis ATCC 49124]
 gi|322125405|gb|EFX96755.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           vestibularis ATCC 49124]
          Length = 447

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/366 (33%), Positives = 197/366 (53%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ +  + +PTP+Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDFNFKAYIQKALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L      V++   +I  P+RELA Q+    ++  K+    + ++  +GG   + Q +K
Sbjct: 61  EKLNPKSGDVQV---VITAPSRELATQIYQATKQIAKHSETEIRVVNYVGGTDKQRQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+     ++I TPGRI D    G L ++     V+DEAD  +D GF+  +  I + +P  
Sbjct: 118 LKVAQPHIVIGTPGRIYDLVKSGDLAIHKAHTFVVDEADMTMDTGFLDTVDKIAASLPKE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  V+T  + +K   +L+ 
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEQIKTSTVIADTIDNWLVSTKGR-NKNEQILEM 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L   Q  +   +IF N K+   +L   L   G  V  IHG I  R R +I++  K+   +
Sbjct: 237 LKGMQPYL--AMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLEFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 RELEKM 360


>gi|260102894|ref|ZP_05753131.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           helveticus DSM 20075]
 gi|260083296|gb|EEW67416.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           helveticus DSM 20075]
          Length = 453

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/365 (34%), Positives = 199/365 (54%), Gaps = 11/365 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  + P +   +    + KPT +Q K IP +L    V   A TG+GKT ++++P+   
Sbjct: 5   FADSRIRPAIQEGLKKIHFEKPTKVQEKVIPAMLSDLRVVVQAATGSGKTHAYLVPIFNE 64

Query: 63  LEKGRARVRMPRTLILEPTRELA---AQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +++    V+   TL   P+RELA    QVA    +     + ++A L GG   E Q +K 
Sbjct: 65  IDEDAHYVQAIVTL---PSRELADQLYQVARQL-RDAAGMHFSIAHLAGGTDRERQLEKY 120

Query: 120 ERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +     ++I TPGR+LD   +   +++ ++  VIDEAD  LDMGF+  I  + S +    
Sbjct: 121 QNNTPQLVIATPGRLLDFVQKKVFVVDQVKTFVIDEADMTLDMGFLADIDQVASKMTKDV 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q   FSAT+  +L      ++ +P +I ++ PS  A TI++  +   ++ ++K  L + L
Sbjct: 181 QIAAFSATIPVKLSNFLRKYMAHPDQIVIDNPSVIAPTIKNDLLDIGSK-NRKSVLYKLL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q  +   ++F N K+ V  L   L+ QG  V  IHG + +R R + L   ++G  Q 
Sbjct: 240 TMGQPYL--ALVFANTKQTVDELTRYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQFQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARGLDI  V  V N+++P   E  IHRIGRTGR G  G A TL+ +E++  I+
Sbjct: 298 VVASDLAARGLDIDGVSLVINYEIPRDIEFVIHRIGRTGRNGLSGHAITLICEEEMNRIE 357

Query: 359 AIEKL 363
            +EK+
Sbjct: 358 DLEKM 362


>gi|154487146|ref|ZP_02028553.1| hypothetical protein BIFADO_00986 [Bifidobacterium adolescentis
           L2-32]
 gi|154085009|gb|EDN84054.1| hypothetical protein BIFADO_00986 [Bifidobacterium adolescentis
           L2-32]
          Length = 723

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/376 (32%), Positives = 186/376 (49%), Gaps = 35/376 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LG+   +V  +   G     PIQ  T+P  L   D+ G  +TG+GKT +F +P++  
Sbjct: 25  FAELGVPGPLVRVLAADGKKTAFPIQADTLPDSLAGRDILGRGRTGSGKTLAFSIPLVAR 84

Query: 63  L---------------------EKGRARVRM-------PRTLILEPTRELAAQVADNFEK 94
           L                      KG A  R        PR L+L PTRELA Q+ D    
Sbjct: 85  LGEVDADEYENMSQFRHEVEQVRKGHAEERRADDFLPHPRGLVLAPTRELANQINDVLMP 144

Query: 95  YGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDE 154
             + Y +T   + GG+ +  Q + L  GAD+++  PGR+ D   +  L +  +E+ VIDE
Sbjct: 145 LAQMYGMTTTTVYGGVRYARQIRDLRAGADIVVACPGRLEDLLEQHALTLEKVEVAVIDE 204

Query: 155 ADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA 214
           AD M DMGF+P ++ +   V F  Q +LFSAT+   + +V   FL +PK   V++ ++  
Sbjct: 205 ADEMADMGFLPPVKRLLGQVSFDAQIMLFSATLDHGVDEVVNTFLTDPKIHSVDSATAAV 264

Query: 215 -ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            E   H F  T      +  L++ L   +      I+F   K     L   L K G    
Sbjct: 265 DEMTHHVFETTQGD---RHELVRTLASGKGRR---ILFTRTKFQTQKLAKDLTKNGIPAA 318

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            +HGN+ Q  R + L+ F+ G + +MVA+D+AARG+D+  V  V   + P   ++++HR 
Sbjct: 319 ELHGNLSQNQRDRNLAAFESGDVNVMVATDVAARGIDVSGVELVVQVEPPEDPKSFLHRS 378

Query: 334 GRTGRAGRHGKAFTLV 349
           GRT RAG  G   T+V
Sbjct: 379 GRTARAGHSGDVVTIV 394


>gi|298291272|ref|YP_003693211.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
 gi|296927783|gb|ADH88592.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
          Length = 619

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/377 (32%), Positives = 200/377 (53%), Gaps = 14/377 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL---EKGRARVRMPRTLI 77
           Y  PTP+Q+  +       D+   AQTG+GKT ++ L M   L    +  A   +P+ L+
Sbjct: 16  YDNPTPVQLAVLAPEASGRDLLVSAQTGSGKTVAYGLAMAETLLGVSERFAAATVPQALV 75

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           + PTRELA QV   F          +   +GG+    + + L +GA V++ TPGR+ DH 
Sbjct: 76  VAPTRELALQVQREFAWLYAATGARIVSCVGGMDPRQEQRLLNQGAHVVVGTPGRLRDHL 135

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
            RG+L ++ + + V+DEAD MLD+GF   ++ I    P  R++LLFSATM   +  ++  
Sbjct: 136 ERGRLDLSALRVAVLDEADEMLDLGFREDLEFILDATPPERRSLLFSATMARGITTLARR 195

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
           + ++  RIEV +       IE+  +       +   +   +L+  DT  + I+FCN ++ 
Sbjct: 196 YQRDALRIEVASAEGGHADIEYRTMRVAPTEVEHAVV--NVLRYYDT-PSAIVFCNTREA 252

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
           V  +   L+++ FS  A+ G + Q  R   L   ++G  ++ VA+D+AARG+D+P++G V
Sbjct: 253 VRRMHAMLQERQFSAVALSGELSQNERNHALQALRDGRARVCVATDVAARGIDLPNLGLV 312

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
            + D+PN AE+  HR GRTGRAGR G +  LV     +  + + + +  K  W       
Sbjct: 313 IHADLPNDAESLQHRSGRTGRAGRKGVSVLLVPPFRRRRTEDLMRALGIKPSW------- 365

Query: 378 LNPPLEKIDIAQHNHAR 394
             PP  + DI + +H R
Sbjct: 366 SGPPTSE-DIRKLDHER 381


>gi|195379947|ref|XP_002048732.1| GJ21163 [Drosophila virilis]
 gi|194143529|gb|EDW59925.1| GJ21163 [Drosophila virilis]
          Length = 519

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 146/450 (32%), Positives = 231/450 (51%), Gaps = 32/450 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +   +   G    TPIQ   IP +L   D  G A+TG+GKT +F LP   I
Sbjct: 9   FQKLGLRPWLAKQLTKLGLKGVTPIQENCIPAILSGKDCIGAAKTGSGKTFAFALP---I 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEK          L+L PT ELA Q+++ F   G+   + V ++ GG     +++KL + 
Sbjct: 66  LEKLSEEPVSHFALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQR 125

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++  PGR+ DH         +N++ LV+DEADRML+  F   +  I   +P TRQ L
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKTRQNL 185

Query: 182 LFSATMTDELQK-----VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            FSATM D +++     ++++ L+  +  +V    +T +T+E  ++   A Y +   L++
Sbjct: 186 FFSATMKDFMKESSIFPIAKDCLEWSQESDV----ATVDTLEQRYLLC-ADYDRDMVLIE 240

Query: 237 QL--LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            L   + Q+   N +IF N KK    L  +L         +HG + Q+ R+  LS FK  
Sbjct: 241 ALRKYREQNENANVMIFTNTKKYCQLLSMTLSSMEIENVCLHGFMRQKERVAALSRFKSN 300

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KED 353
            I+ ++A+D+AARGLDIP V  V N  +P   + YIHR+GRT RAGR G A ++     D
Sbjct: 301 HIRTLIATDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGLAISIFRFPRD 360

Query: 354 IKHIDAIE-----KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           ++ + AIE     KL E  +D            +E+I   Q N  R+ + +   +  FD 
Sbjct: 361 LELLGAIEAEINTKLTEHPID---------QRMVERI-FMQVNVTRRESEMQLDNNDFDE 410

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQEN 438
           R +NY  +   +  K+ +++  L +  Q++
Sbjct: 411 RAQNYRRKTWIMEGKDPDQMEALYRKKQKD 440


>gi|254718344|ref|ZP_05180155.1| DEAD-box ATP dependent DNA helicase [Brucella sp. 83/13]
 gi|265983304|ref|ZP_06096039.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
 gi|306839567|ref|ZP_07472373.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
 gi|306842588|ref|ZP_07475237.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
 gi|264661896|gb|EEZ32157.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
 gi|306287233|gb|EFM58721.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
 gi|306405353|gb|EFM61626.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
          Length = 626

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 191/347 (55%), Gaps = 10/347 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEK- 65
           ++P +  A+   GY   T +Q   +       D+   AQTG+GKT +F L M  TILE  
Sbjct: 7   IAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMANTILEDE 66

Query: 66  ---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
              G A    P  +I+ PTRELA QV    E    +    +A  +GG+    + + LERG
Sbjct: 67  LRFGDAGA--PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALERG 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGR+ DH  R  L M+ + ++V+DEAD MLDMGF   ++ I    P  R+TL+
Sbjct: 125 SHIVVGTPGRLRDHITRNALDMSQLRVIVLDEADEMLDMGFREDLEFILGEAPEDRRTLM 184

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++++ F  N  RI V + +S    I++  +     + +  A++  LL   
Sbjct: 185 FSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPV-PPHERDHAIINTLLYYD 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +N IIFC+ ++ V ++   L  +GF+V A+ G + Q  R   L   ++G  ++ VA+
Sbjct: 244 S--QNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVAT 301

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+P++  V + D+P   +  +HR GRTGRAGR G    +V
Sbjct: 302 DVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVV 348


>gi|225351817|ref|ZP_03742840.1| hypothetical protein BIFPSEUDO_03418 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157064|gb|EEG70403.1| hypothetical protein BIFPSEUDO_03418 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 690

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/379 (32%), Positives = 193/379 (50%), Gaps = 37/379 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPT-PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           + FA+LG+ P  +  VL A   K   PIQ  T+P  L   D+ G  +TG+GKT +F +P+
Sbjct: 26  LTFAELGV-PGPLVRVLAADDKKTAFPIQADTLPDSLAGRDILGRGRTGSGKTLAFSIPL 84

Query: 60  LTIL---------------------EKGRARVRM-------PRTLILEPTRELAAQVADN 91
           +  L                     ++  A+ R        PR L+L PTRELA Q+ D 
Sbjct: 85  VARLGEVDANEYENMSQFRHEVDRVKQAHAKERRADDFVPHPRGLVLAPTRELANQINDV 144

Query: 92  FEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILV 151
                + Y +    + GG+ +  Q + L+ GAD+++  PGR+ D   +G L ++ +E+ V
Sbjct: 145 LMPLAQIYGINTTTVYGGVRYARQIRDLQAGADIVVACPGRLEDLIEQGALTLDKVEVAV 204

Query: 152 IDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           IDEAD M DMGF+P ++ +   + F  Q +LFSAT+   + +V E FL +PK   V++ +
Sbjct: 205 IDEADEMADMGFLPPVKRLLGQISFDAQIMLFSATLDHGVDEVVETFLSDPKVHSVDSAT 264

Query: 212 STA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
           +T  E   H F  T      +  L++ L   +      I+F   K     L   L + G 
Sbjct: 265 ATVDEMTHHVFKTTQGN---RHELVRTLASGKGRR---ILFTRTKFQTQKLAKDLTQNGI 318

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
               +HGN+ Q  R + L+ F  G + +MVA+D+AARG+D+  V  V   + P   ++++
Sbjct: 319 PAAELHGNLSQNQRDRNLAAFNSGDVNVMVATDVAARGIDVSGVELVVQVEPPEDPKSFL 378

Query: 331 HRIGRTGRAGRHGKAFTLV 349
           HR GRT RAG  G   T++
Sbjct: 379 HRSGRTARAGHSGDVVTII 397


>gi|21410145|gb|AAH30895.1| Ddx21 protein [Mus musculus]
          Length = 689

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/335 (37%), Positives = 191/335 (57%), Gaps = 27/335 (8%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG---RARVRMPRTLILEPTR 82
           PIQ KT   V    D+   A+TGTGKT SF +P++  L+ G   R R R P+ L+L PTR
Sbjct: 121 PIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPTR 180

Query: 83  ELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142
           ELA QV+ +F    K   L+VA   GG P+  Q +++  G D+L+ TPGRI DH   GKL
Sbjct: 181 ELANQVSKDFSDITKK--LSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKL 238

Query: 143 LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR------QTLLFSATMTDELQKVSE 196
            +  ++ +V+DE D+MLDMGF   ++ I   V + +      QTLLFSAT    +  V++
Sbjct: 239 DLTKLKHVVLDEVDQMLDMGFADQVEEIL-CVAYKKDSEDNPQTLLFSATCPHWVFNVAK 297

Query: 197 NFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN-GIIFC 252
            ++++  +++++        A T+EH  +A    ++++ A++  +++     +   IIFC
Sbjct: 298 KYMKSTYEQVDLIGKKTQKAAITVEH--LAIKCHWTERAAVIGDVIRVYSGHQGRTIIFC 355

Query: 253 NQKKNVV----NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
             KK+      N C   + Q     ++HG+I Q+ R   L  F+ G   ++VA+++AARG
Sbjct: 356 ETKKDAQELSQNTCIKQDAQ-----SLHGDIPQKQREITLKGFRNGNFGVLVATNVAARG 410

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           LDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 411 LDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTG 445


>gi|226478852|emb|CAX72921.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Schistosoma japonicum]
          Length = 527

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/391 (32%), Positives = 211/391 (53%), Gaps = 13/391 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +S  V  A+   G+   T IQ K IP +L+  D+   A+TG+GKT +F++P++ +
Sbjct: 52  FEDLPISEPVKRAIKVMGFTHMTDIQNKCIPQLLEHRDIMACAKTGSGKTLAFLIPVVEL 111

Query: 63  -LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L  G         +I+ PTREL+ Q      +  +  NL + L++GG   + + + LE+
Sbjct: 112 MLSLGLQPRNGTGAIIISPTRELSLQTYGVLTELIQFTNLRIGLIMGGSNRQTEAQNLEK 171

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           G  +L+ TPGR+LDH    K  + +N++ LVIDEADR+LD+GF   ++ I  L+P  RQT
Sbjct: 172 GVTILVATPGRLLDHLTNTKFFLRHNLKALVIDEADRLLDIGFEVEMRQIIKLLPTVRQT 231

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTP--SSTAETIEHCFVATYAQYSKKCALLQQL 238
           +LFSAT+ ++ + ++   L+    +  + P   +T E +E  +V      SK+  LL   
Sbjct: 232 MLFSATLNEKTKNLANAALKASCVMVGSVPDNEATVEGLEQGYVV--CSPSKRFCLLYTF 289

Query: 239 LQSQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++   + K  +    C + K    L + ++     V AIHG   Q  R      F +   
Sbjct: 290 IRKNKSKKIMVFMASCMEVKFYYELLNFVDT---PVLAIHGRQKQAKRTSTFLQFIKAEA 346

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++ +D+ ARGLDIP V  +  +D P+ A+ YIHR+GRT RAG  G A  ++   +++ 
Sbjct: 347 AVLLCTDVGARGLDIPKVDWILQYDPPDDAKEYIHRVGRTARAGSTGNALLVLRPHELEF 406

Query: 357 IDAIEKLIEKKVDW--LNGDLSSLNPPLEKI 385
           +  + K   K V++   N  ++ + P LEK+
Sbjct: 407 LSILRKARVKVVEYEIANSKMADVQPALEKL 437


>gi|227513124|ref|ZP_03943173.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
 gi|227083699|gb|EEI19011.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
          Length = 453

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/352 (35%), Positives = 192/352 (54%), Gaps = 10/352 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  L P ++ A+ D  + KPTP+Q K IP++LQ  DV G + TG+GKT +F+LP+   
Sbjct: 4   FSEFHLKPFILNALDDLKFTKPTPVQEKLIPVILQHRDVVGQSATGSGKTHAFLLPIFND 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKLE 120
           ++    ++   + +I  P+RELA Q+ D  ++  K     +++   +GG   + Q  KL+
Sbjct: 64  ID---PKIDEVQAVITTPSRELAYQILDAAKQLAKFSPDPISIGSYVGGTDKKRQEDKLK 120

Query: 121 RGADVLIC-TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    LI  TPGR+ D    G L ++    LVIDEAD  LDMGF+  + +I +      Q
Sbjct: 121 KEQPQLIVGTPGRVWDLIKNGGLDVHTASKLVIDEADMTLDMGFLDVVDHIAASFGKHVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++FSAT+  ++    + ++ NP   E+   S  + TI++  ++T  Q   K  L+  LL
Sbjct: 181 MMVFSATIPQKITVFLKKYMDNPVIEEIPVSSIISPTIDNWLISTKGQ--DKNQLIYHLL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     +IF N +K V  L   L  QG  V  +HG +  R R +I+   K    Q +
Sbjct: 239 TIGEPYLV-LIFANTRKRVEELTEYLRGQGLKVAMVHGGVKPRERKQIMKRIKNLDFQFV 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNR-AENYIHRIGRTGRAGRHGKAFTLVA 350
           VA+DLAARG+DI  V  V N D+P    E +IHR+GRTGR G  G + TL +
Sbjct: 298 VATDLAARGIDIEGVSQVINDDIPTEDLEFFIHRVGRTGRNGMSGTSITLYS 349


>gi|145612307|ref|XP_367108.2| hypothetical protein MGG_07033 [Magnaporthe oryzae 70-15]
 gi|145019494|gb|EDK03722.1| hypothetical protein MGG_07033 [Magnaporthe oryzae 70-15]
          Length = 645

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 166/292 (56%), Gaps = 6/292 (2%)

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
           GR R   P +LIL PTREL +Q+ D   K+     +   ++ GG    +Q +++ERG D+
Sbjct: 242 GRQRKAYPTSLILAPTRELVSQIYDESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCDL 301

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----RQTL 181
           L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P I+ I           RQTL
Sbjct: 302 LVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVQDRQTL 361

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +Q+++ +FL++   + V    ST+E I    +    +  K   LL  L   
Sbjct: 362 MFSATFPGYIQQLARDFLKDYIFLSVGRVGSTSENITQRVMEVKHRDDKISHLLDLLSTH 421

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF   K+N   L   L+ Q     +IHG+  QR R + L  F+ G   ++VA
Sbjct: 422 GGGLT--LIFVETKRNADELSDFLQNQNLPATSIHGDRTQRERERALEMFRTGRCPILVA 479

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           + +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G A      +D
Sbjct: 480 TAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFDMKD 531


>gi|145501031|ref|XP_001436498.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124403638|emb|CAK69101.1| unnamed protein product [Paramecium tetraurelia]
          Length = 553

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 133/363 (36%), Positives = 194/363 (53%), Gaps = 19/363 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F DL +  +++  +      KPTPIQ++ +P VL   D+ G+A +G GKT  F+LP L  
Sbjct: 110 FQDLRVDHRILKILSKMKIKKPTPIQMQGLPTVLMGRDIIGVAPSGQGKTLVFLLPALLQ 169

Query: 61  TILEKGRA---RVRMPRTLILEP-------TRELAAQVADNFEKYGKNYNLTVALLIGGI 110
            + E+ +    R   P  LIL P       T ELA Q    F+K G    +   L IGG+
Sbjct: 170 CVDEQMKMPIIRGEGPFALILLPSHELAILTYELAKQYCQKFQKKGFP-GIHCLLGIGGM 228

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + ++ G  ++I TPGRI D  N+ K+ M+    +V+DEADRMLD  F   I+NI
Sbjct: 229 DMSSQLQSIKNGVHIVIGTPGRISDMVNKKKINMDLCRFIVLDEADRMLDQVFELEIRNI 288

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQT+LFSAT+  ++Q+ ++  L +P  I V           +  V     Y K
Sbjct: 289 LEHFTGPRQTMLFSATLPKKIQEFTKQTLVDPLVINVGRSGQI-----NLNVIQEILYVK 343

Query: 231 KCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           +   L  LL S + T    +IF   + +V ++   L  +G  V  +HG   Q  R K L 
Sbjct: 344 QEEKLHYLLDSLKKTTPPVVIFSEHQNDVDDINEYLLIKGVEVVGLHGGKQQEDRTKALK 403

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F  G   ++VA+D+AA+GLD PD+ HV N+D+P   E+YIHRIGRTGR G+ G+A T V
Sbjct: 404 QFLNGQKDVLVATDVAAKGLDFPDIKHVINYDMPKDIESYIHRIGRTGRQGKTGRATTFV 463

Query: 350 AKE 352
            ++
Sbjct: 464 NRQ 466


>gi|71026577|ref|XP_762954.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68349906|gb|EAN30671.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 707

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/356 (36%), Positives = 193/356 (54%), Gaps = 8/356 (2%)

Query: 18  DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-EKGRARVRMPRTL 76
           ++ + +PTPIQ       L   D+ G++QTG+GKT +F+LP L  L  +       P  L
Sbjct: 336 ESNFTEPTPIQKVGWTSCLTGRDIIGVSQTGSGKTLTFLLPGLLHLLAQPPVGTGGPIML 395

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           IL PTREL  Q+A+    Y +  NL +  + GG    AQ ++L+ GA++++ TPGR+L+ 
Sbjct: 396 ILSPTRELCLQIAEEARPYSRLLNLRLVPIYGGASKFAQVRELQNGAEIMVATPGRLLEF 455

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
            + G + +N +   V+DEADRMLDMGF P I+ I   +   RQTL+FSAT   E+++++ 
Sbjct: 456 LSNGTIKLNRVSYFVMDEADRMLDMGFEPQIRKIVGQIRPDRQTLMFSATWPSEIKRLAS 515

Query: 197 NFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
            F + N   I+V     TA       V     Y  +  L    L S    K  +IF + K
Sbjct: 516 EFCKANSIYIQVGDLELTANPNIRQNVEFPNSYEVRDKLF-DFLGSIPPEKKVLIFSDLK 574

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
                L  +L  + F   ++HGN  Q  R +IL+ F+ G + ++VA+D+AARGLDI D+ 
Sbjct: 575 SFADQLTSALRYRRFKSASLHGNKTQAQRERILNMFRSGDVNVLVATDVAARGLDIKDID 634

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL-----VAKEDIKHIDAIEKLIEK 366
           +V N DVP    +YIHRIGRTGR    G++        +    +K    + KL+ K
Sbjct: 635 YVINLDVPKSLLDYIHRIGRTGRGNSKGESLLYFPIDTLTPAKVKFAQDLSKLLSK 690


>gi|320582192|gb|EFW96410.1| ATP-dependent RNA helicase, putative [Pichia angusta DL-1]
          Length = 428

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 135/392 (34%), Positives = 205/392 (52%), Gaps = 37/392 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA LGL   +V ++      +PT IQ   IP +L+  D  G A+TG+GKT +F  PML 
Sbjct: 3   DFASLGLPRWLVESLQAMKITRPTNIQAACIPEILKGRDCIGGAKTGSGKTIAFGAPMLA 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +  + +     L+L PTRELA Q+AD F   G   NL V L+IGG     Q   ++ 
Sbjct: 63  KWSQDPSGIF---GLVLTPTRELAMQIADQFAALGATVNLKVRLIIGGESMTDQVAMIKE 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNN---------IEILVIDEADRMLDMGFIPYIQNITS 172
               +I TPGR+        ++M N         ++ LV+DEADR+L   F  ++Q    
Sbjct: 120 NPHFIIATPGRL------AHIIMENEDECRGLKRVKYLVLDEADRLLTDSFTDHLQTCFE 173

Query: 173 LVPFT--RQTLLFSATMTDELQKVSEN---------FLQNPKRIE-VNTPSSTAETIEHC 220
            +P +  RQTLLF+AT+TD ++ + +          FL     ++ V  PS    T+   
Sbjct: 174 ALPNSNKRQTLLFTATVTDSVRALKDRPVAPGKQPVFLHELDNVDTVKIPS----TLRLL 229

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
           +V   A    K ++L  +L ++D  ++  I+F N+ +    L   L     +  ++H  +
Sbjct: 230 YV--LAPVVVKESMLHNILTNEDYKESTAIVFVNRSETAEILRRLLRHLEVTTTSLHSEM 287

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q  R   L  F+ G  +++VA+DLA+RGLDIP V  V NFD+P   ++Y+HR+GRT RA
Sbjct: 288 PQSERTNSLHRFRAGAARVLVATDLASRGLDIPSVELVINFDIPRDPDDYVHRVGRTARA 347

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
           GR G A ++V   D+  I AIE  +  K++ L
Sbjct: 348 GRKGDAISMVTPNDLSRILAIEDRVGVKMEEL 379


>gi|268318980|ref|YP_003292636.1| ATP-dependent RNA helicase [Lactobacillus johnsonii FI9785]
 gi|262397355|emb|CAX66369.1| ATP-dependent RNA helicase [Lactobacillus johnsonii FI9785]
          Length = 461

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/347 (35%), Positives = 195/347 (56%), Gaps = 11/347 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           + KPT +Q   IP +L + +V   A TG+GKT ++++P+L ++++      + + ++  P
Sbjct: 26  FKKPTKVQSSVIPALLNKKNVVVQAATGSGKTHAYLIPILNMIDENAP---VTQAIVTAP 82

Query: 81  TRELAAQ---VADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE-RGADVLICTPGRILDH 136
           +RELA Q   VA    +     N+++  L GG     Q +K E R   ++I TPGR+ D 
Sbjct: 83  SRELANQLYKVARQL-RDASGLNISIEYLGGGNDRNRQIEKAESRAPQLIIATPGRLHDF 141

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
            ++  + + N++  +IDEAD  LDMGF+  +  I S +        FSAT+  +L+    
Sbjct: 142 ASKKFINLENVKAFIIDEADMTLDMGFLSQMDEIMSKLDKKAVLGAFSATIPVKLENFLR 201

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
            ++  P+ I ++ P+  A TI++  +   ++  KK  L + L   Q  +   ++F N KK
Sbjct: 202 KYMSKPEFIVIDNPAIIAPTIQNDLIDVGSR-DKKSILYKLLTMGQPYL--ALVFANTKK 258

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
            V  L   LE+QG  V  IHG I +R R +I+   +EG  Q +VASDLAARG+D+P V  
Sbjct: 259 TVDELTDYLEEQGLKVAKIHGGITERERKRIIRQVREGQYQYVVASDLAARGIDVPGVNL 318

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           V N+++P   E  IHRIGRTGR G  G A TL+  +++  I+ +EKL
Sbjct: 319 VVNYEIPKDLEFVIHRIGRTGRNGLEGHAITLIYDDEMSQIEDLEKL 365


>gi|329116579|ref|ZP_08245296.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus parauberis
           NCFD 2020]
 gi|326906984|gb|EGE53898.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus parauberis
           NCFD 2020]
          Length = 447

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/366 (34%), Positives = 198/366 (54%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+    + +PT +Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDYNFKQYIQDALDAIKFTEPTDVQKKLIPIVNSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++  A+V++   LI  P+RELA Q+ D  ++   + +  + L+  +GG     Q +K
Sbjct: 61  EKLDEDLAQVQV---LITAPSRELATQIFDAAKQIASHSDKEIRLVNYVGGTDKLRQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+     +++ TPGRI D    G L ++     V+DEAD  +DMGF+  +  I S +P  
Sbjct: 118 LKVSQPHIVVGTPGRIYDLVKSGDLEIHKATTFVVDEADMTMDMGFLDTVDKIASALPKA 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TIE+  V+T  + +    L   
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVIEQIKTQTVIADTIENWLVSTKGRDNNSQIL--S 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +LQ+ +     ++F N K+    L   L   G  V  IHG +  R R +I++  K+   Q
Sbjct: 236 ILQNMNPYL-AMLFVNTKERADELHSFLVANGLKVAKIHGGVPPRERKRIMNQVKKLDFQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V H+ N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHIINDAIPQDLSFFVHRVGRTGRNGMSGTAITLYKPSDDSDI 354

Query: 358 DAIEKL 363
             +EKL
Sbjct: 355 KELEKL 360


>gi|262282195|ref|ZP_06059964.1| ATP-dependent RNA helicase [Streptococcus sp. 2_1_36FAA]
 gi|262262649|gb|EEY81346.1| ATP-dependent RNA helicase [Streptococcus sp. 2_1_36FAA]
          Length = 447

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 192/371 (51%), Gaps = 19/371 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ T +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFTFKNYIQEALEDLKFVEATEVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKK 118
             L +    V++   +I  P+RELA Q+     +     +  + VA  +GG     Q  K
Sbjct: 61  QKLNEDEDHVQV---VITAPSRELATQIYQATRQIASFSDKEIRVANYVGGTDKNRQIDK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           LE     ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I S +P  
Sbjct: 118 LEFSQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIASSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-----AQYSKKC 232
            Q L+FSAT+  +LQ   + +L NP   ++ T +  ++TIE+  V+T      AQ  +  
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVMEQIKTKTVISDTIENWLVSTKGRDKNAQIYEIS 237

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            +LQ  L         +IF N K     L   L  QG  V  IHG+I  R R +I++  K
Sbjct: 238 RILQPYL--------AMIFVNTKTRADELHSYLLAQGLKVAKIHGDIAPRERKRIMNQVK 289

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
               + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A  L    
Sbjct: 290 NLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAIALYQPS 349

Query: 353 DIKHIDAIEKL 363
           D   I  +EKL
Sbjct: 350 DDSDIRELEKL 360


>gi|157107875|ref|XP_001649978.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108868632|gb|EAT32857.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 526

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 138/424 (32%), Positives = 220/424 (51%), Gaps = 22/424 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGL P +   +   G  +PTPIQ   IP +L   D  G A+TG+GKT +F LP+L  
Sbjct: 9   FSDLGLKPWIANQMDKLGLRRPTPIQEACIPRILDGQDCIGAAKTGSGKTFAFALPILQR 68

Query: 63  LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L +       P +   L+L PT ELA Q+A+ F   G+  ++ V ++ GG     + ++L
Sbjct: 69  LSEE------PTSNFALVLTPTHELAYQIAEQFSVAGQPMSVKVCVITGGTDQLLEAQRL 122

Query: 120 ERGADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +    +++  PGR+  H           ++ LV+DEADR+L   F   +  I S +P  R
Sbjct: 123 QSRPHIVVAMPGRLASHLTGCNTYSFRAMQFLVVDEADRVLSGSFDEDLAAIDSFLPKKR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQ 236
           Q L FSAT+  E  + +  F       E +  S  +T ET++  ++   A Y +   L++
Sbjct: 183 QNLFFSATLK-EFMRENSVFPIGADAFEWSEESEVATVETLDQRYILC-ADYDRDMVLIE 240

Query: 237 QLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            L + ++  +    +IF N KK+   L  +L   GF    +HG + Q+ R+  L+ FK  
Sbjct: 241 TLRKFKEDNEEASVMIFTNSKKDCQVLSMTLNTIGFDNVCLHGFLRQKERVAALNRFKSK 300

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KED 353
            +++++A+D+A+RGLDIP+V  V N  +P     YIHR+GRT RAGR G A ++     D
Sbjct: 301 HVRVLIATDVASRGLDIPNVQLVLNHRLPKIPNEYIHRVGRTARAGRKGLAISIFRFPRD 360

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           ++ +  IE LI  K+     D       +E+I   Q + AR+   +   +  FD R+ NY
Sbjct: 361 LEFLGEIESLINTKLTEHPID----QRLVERI-FMQVSVARREAEMNLDNKDFDERQHNY 415

Query: 414 SSQK 417
             +K
Sbjct: 416 RRKK 419


>gi|237830431|ref|XP_002364513.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211962177|gb|EEA97372.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|221507386|gb|EEE32990.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 475

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 120/360 (33%), Positives = 189/360 (52%), Gaps = 7/360 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF +  L  +++  + + G+ KP+PIQ  +IP+ L   ++   A+ GTGKTA+F +P+L 
Sbjct: 103 DFEEYFLRRELLMGIFEKGFEKPSPIQEASIPIALAGKNILARAKNGTGKTAAFSIPLL- 161

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             EK +   R  + LIL PTRELA Q +   +  GK+ N+   +  GG        +L  
Sbjct: 162 --EKCQTSKRYIQGLILVPTRELALQTSAVVKAIGKHMNVQCMVSTGGTSLRDDIMRLYN 219

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL  TPGRILD  N+G   ++N  ++V+DEAD++L   F P ++ +   VP  RQ L
Sbjct: 220 PVHVLCGTPGRILDLANKGVADLSNCHMVVMDEADKLLSAEFQPIVEELIKFVPRERQIL 279

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           ++SAT    ++     +L +   I +    +     ++     + +  +K   L  L  S
Sbjct: 280 MYSATFPVTVKDFKHKYLPDAHEINLMDELTLKGVTQY---YAFVEERQKVHCLNTLF-S 335

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 336 KLQINQAIIFCNSVTRVELLAKKITELGYSCFYIHARMMQSHRNRVFHDFRNGACRCLVS 395

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  L+  +D  ++  IE
Sbjct: 396 SDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINLITYDDRFNLYRIE 455


>gi|145232875|ref|XP_001399810.1| ATP-dependent RNA helicase dbp8 [Aspergillus niger CBS 513.88]
 gi|152013493|sp|A5AA68|DBP8_ASPNC RecName: Full=ATP-dependent RNA helicase dbp8
 gi|134056731|emb|CAK44220.1| unnamed protein product [Aspergillus niger]
          Length = 522

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/388 (33%), Positives = 206/388 (53%), Gaps = 28/388 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L ++P ++ ++      KPT IQ   IP +L   D  G ++TG+GKT +F +PML  
Sbjct: 94  FASLNVAPWLIGSLTTMAVRKPTAIQKACIPEILNGRDCIGGSRTGSGKTIAFSVPMLQK 153

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             +    +     L+L PTRELA Q+ +  +      ++   L+ GG     Q   L + 
Sbjct: 154 WAEDPFGIF---GLVLTPTRELALQIYEQIKAISAPQSMKPLLITGGTDMRPQAVALAQR 210

Query: 123 ADVLICTPGRILDHFN-------RGKLLMNNIEILVIDEADRMLDMG---FIPYIQNITS 172
             V+I TPGR+ DH N       RG   +  + ++V+DEADR+L  G    +P ++   S
Sbjct: 211 PHVVIATPGRLADHINTSGSDTIRG---LKRVRMVVLDEADRLLAPGHGSMLPDVETCLS 267

Query: 173 LVPFT--RQTLLFSATMTDELQKVSENFLQNPK------RIEVNTPSSTAETIEHCFVAT 224
            +P +  RQTLLF+AT+T E++ +      + K       I     +S   T++  ++  
Sbjct: 268 ALPPSSERQTLLFTATLTPEVRALKSMPRPSTKPPIFVTEISTENNASIPPTLKQTYLKV 327

Query: 225 YAQYSKKCALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
              + +  A L  LL ++ +  K  IIFCN  K    L   L +    V ++H  + Q  
Sbjct: 328 PMTHRE--AFLHVLLSTEANASKPAIIFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSE 385

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L+ F+    +L+VA+D+A+RGLDIP V  V NFDVP   ++Y+HR+GRT RAGR G
Sbjct: 386 RNANLARFRASAARLLVATDVASRGLDIPSVELVVNFDVPRNPDDYVHRVGRTARAGRKG 445

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKV-DW 370
           ++ TLV + D+  + AIE+ + +++ +W
Sbjct: 446 ESVTLVGQRDVSLVLAIEERVGRQMEEW 473


>gi|6321963|ref|NP_012039.1| Dbp8p [Saccharomyces cerevisiae S288c]
 gi|731740|sp|P38719|DBP8_YEAST RecName: Full=ATP-dependent RNA helicase DBP8; AltName: Full=DEAD
           box protein 8
 gi|160380633|sp|A6ZT77|DBP8_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP8; AltName: Full=DEAD
           box protein 8
 gi|458901|gb|AAB68014.1| Yhr169wp [Saccharomyces cerevisiae]
 gi|151944115|gb|EDN62408.1| DEAD box protein [Saccharomyces cerevisiae YJM789]
 gi|207344531|gb|EDZ71646.1| YHR169Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256273978|gb|EEU08896.1| Dbp8p [Saccharomyces cerevisiae JAY291]
 gi|259146927|emb|CAY80183.1| Dbp8p [Saccharomyces cerevisiae EC1118]
 gi|285810075|tpg|DAA06862.1| TPA: Dbp8p [Saccharomyces cerevisiae S288c]
 gi|323308784|gb|EGA62022.1| Dbp8p [Saccharomyces cerevisiae FostersO]
 gi|323337360|gb|EGA78613.1| Dbp8p [Saccharomyces cerevisiae Vin13]
 gi|323348321|gb|EGA82570.1| Dbp8p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323354703|gb|EGA86538.1| Dbp8p [Saccharomyces cerevisiae VL3]
          Length = 431

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 143/432 (33%), Positives = 223/432 (51%), Gaps = 37/432 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGLS  +  ++      +PT IQ   IP +L+  D  G A+TG+GKT +F  PMLT
Sbjct: 3   DFKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +  + +     ++L PTRELA Q+A+ F   G + N+ V++++GG     Q   L+R
Sbjct: 63  KWSEDPSGMF---GVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQR 119

Query: 122 GADVLICTPGRILDHF------NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
               +I TPGR+  H         G L+    + LV+DEAD +L   F  ++    S +P
Sbjct: 120 KPHFIIATPGRLAHHIMSSGDDTVGGLM--RAKYLVLDEADILLTSTFADHLATCISALP 177

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPK------RIE----VNTPSSTAETIEHCFVA 223
               RQTLLF+AT+TD+++ +    +Q  K      ++E    V  PS+    IE+  V 
Sbjct: 178 PKDKRQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLK--IEYILVP 235

Query: 224 TYAQYSKKCALLQQLLQSQDTM-KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
            +     K A L QLL  ++   K  IIF N+      L  +L++    V ++H  + Q+
Sbjct: 236 EHV----KEAYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQ 291

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R   L  F+    ++++A+D+A+RGLDIP V  V N+D+P+  + +IHR GRT RAGR 
Sbjct: 292 ERTNSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRI 351

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG--DLSSLNPPLEKIDIAQHNHARKNNPIP 400
           G A + V + D+  I AIE  I KK+   N   D + +   L K+       A++ + + 
Sbjct: 352 GDAISFVTQRDVSRIQAIEDRINKKMTETNKVHDTAVIRKALTKV-----TKAKRESLMA 406

Query: 401 QKSTGFDRRKKN 412
            +   F  RK+ 
Sbjct: 407 MQKENFGERKRQ 418


>gi|332194953|gb|AEE33074.1| translation initiation factor 4A-2 [Arabidopsis thaliana]
          Length = 407

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 125/362 (34%), Positives = 191/362 (52%), Gaps = 11/362 (3%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  L+    + +    L+L 
Sbjct: 53  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQ---ALVLA 109

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA Q+       G    + V   +GG       + L+ G  V++ TPGR+ D   R
Sbjct: 110 PTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR 169

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
             L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +FSATM  E  +++  F+
Sbjct: 170 QSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFM 229

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLLQSQDTMKNGIIFCNQKK 256
             P RI V     T E I+  +V    +  K    C L + L  +Q      +IF N ++
Sbjct: 230 SKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAITQ-----SVIFVNTRR 284

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
            V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ +DL ARG+D+  V  
Sbjct: 285 KVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL 344

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
           V NFD+P + ENY+HRIGR+GR GR G A   V  +D + +  I+K     V+ L  +++
Sbjct: 345 VINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQKFYNVVVEELPSNVA 404

Query: 377 SL 378
            L
Sbjct: 405 DL 406


>gi|320580361|gb|EFW94584.1| eukaryotic initiation factor 4A [Pichia angusta DL-1]
          Length = 381

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/367 (35%), Positives = 203/367 (55%), Gaps = 23/367 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L P+++ A+L        PI         +  DV   AQ+GTGKTA+F +   + 
Sbjct: 25  FDELNLKPEIIRAIL--------PIT--------EGRDVLAQAQSGTGKTATFTI---SA 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++   +++  + LIL PTRELA Q+       G + +LTV   IGG   +   + L  G
Sbjct: 66  LQRIDEKLKKTQALILAPTRELALQIQKVVLAIGMHLDLTVHASIGGKAVQEDMEALRNG 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A +++ TPGR+ D   RG    + I++ ++DEAD ML  GF   I N+   +P T Q +L
Sbjct: 126 AQIVVGTPGRVYDMIERGYFKTDAIKMFIMDEADEMLSSGFKEQIYNVFRFLPTTTQVVL 185

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQLLQS 241
            SATM  ++ +V+  F++NP RI V     T E I+  ++     QY   C  L  L  S
Sbjct: 186 LSATMPQDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYIDVDEEQYKFDC--LCDLYDS 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   L +  F+V AIH ++ Q+ R  I++ F+ G+ +++++
Sbjct: 244 I-SVTQAVIFCNTRRKVETLTQQLTENNFTVSAIHSDLSQQDRDTIMNEFRTGSSRILIS 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A  L+ +ED + +  IE
Sbjct: 303 TDLLARGIDVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGVAINLITREDTEMLREIE 362

Query: 362 KLIEKKV 368
                ++
Sbjct: 363 MFYSTQI 369


>gi|219120692|ref|XP_002181079.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407795|gb|EEC47731.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 500

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/372 (35%), Positives = 195/372 (52%), Gaps = 29/372 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+     ++ ++   G  +PTPIQ++ +P+ L   D+ GIA TG+GKT +F LP++  
Sbjct: 58  FVDMKFPQPILASLKQKGIARPTPIQMQGLPVALAGRDMVGIAFTGSGKTLTFGLPLVMA 117

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQ----------------VADNFEKYGKNYNL 101
             +   R+ +     P  +IL P+RELA Q                  D+ EK  +   L
Sbjct: 118 ALEEELRMPIAPGEGPVGIILAPSRELARQTYELVSELATALTTPPAGDSREK-NRYPQL 176

Query: 102 TVALLIGGIPFEAQNKKLER-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160
              LLIGG     Q + +++ G   ++ TPGR+ D   R  L +     + +DEADRMLD
Sbjct: 177 RTQLLIGGESVRDQVQTVQQQGIHCVVATPGRLRDLLKRKALNLMICRYICLDEADRMLD 236

Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
           +GF   +  I +  P  RQTLLFSAT   + Q  +   L  P  I VN   + A  ++  
Sbjct: 237 LGFDEEVGTIMNHFPHQRQTLLFSATFPKKFQDFARQTLVQP--IVVNVGRAGAANLD-- 292

Query: 221 FVATYAQYSKKCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
            V    +Y K+ A +  LL   Q T    IIFC +K +V ++   L  +G    +IHG  
Sbjct: 293 -VIQEVEYVKQEAKIVYLLHCLQKTAPPVIIFCERKGDVDDIHEYLLLKGVQAVSIHGGK 351

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
           DQ  R + ++ FK G   +++A+D+AA+GLD   + HV NFD+P   ENY+HRIGRTGR 
Sbjct: 352 DQEERNEAITLFKSGQKDVLIATDVAAKGLDFAAIQHVINFDMPTEIENYVHRIGRTGRC 411

Query: 340 GRHGKAFTLVAK 351
           G+ G A T + K
Sbjct: 412 GKTGVATTFINK 423


>gi|317143933|ref|XP_001819794.2| ATP-dependent RNA helicase dbp8 [Aspergillus oryzae RIB40]
          Length = 523

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 131/378 (34%), Positives = 200/378 (52%), Gaps = 27/378 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L +SP +V ++      KPT IQ   IP +L+  D  G ++TG+GKT +F +P   
Sbjct: 94  SFKALNVSPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFAVP--- 150

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL+K          ++L PTRELA Q+ +  +      ++   L+ GG    +Q   L +
Sbjct: 151 ILQKWAQDPFGIFAVVLTPTRELALQIYEQIKAISAPQSMKPLLITGGTDMRSQALALSQ 210

Query: 122 GADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSLV 174
              V+I TPGR+ DH N         +  + ++V+DEADR+L  G    +P ++   S +
Sbjct: 211 RPHVVIATPGRLADHINTSGEDTVCGLKRVRMVVLDEADRLLAPGPGSMLPDVETCLSAL 270

Query: 175 PFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE-------TIEHCFVATY 225
           P +  RQTLLF+AT+T E++      L++  R E   P    E        I      TY
Sbjct: 271 PPSSERQTLLFTATLTPEVRA-----LKSMPRAENKPPVFVTEISTENNGAIPPTLKQTY 325

Query: 226 AQ--YSKKCALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
            +   + + A L  LL ++ ++ K  IIFCN  K    L   L +    V ++H  + Q 
Sbjct: 326 LKVPMTHREAFLHVLLSTERNSTKPAIIFCNHTKTADLLERMLRRLSHRVTSLHSLLPQS 385

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R   L+ F+    +++VA+D+A+RGLDIP V  V NFDVP   ++Y+HR+GRT RAGRH
Sbjct: 386 ERNSNLARFRASAARILVATDVASRGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGRH 445

Query: 343 GKAFTLVAKEDIKHIDAI 360
           G+A TLV + D++ + AI
Sbjct: 446 GEAVTLVGQRDVQLVLAI 463


>gi|306825593|ref|ZP_07458932.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304431954|gb|EFM34931.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 447

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/367 (34%), Positives = 194/367 (52%), Gaps = 11/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKKFQFKNYIAEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   + ++ V ++  +GG     Q +K
Sbjct: 61  QQLDETSDSVQ---AVITAPSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L ++  +I V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKIFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQ 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +  + +   L 
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYELT 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           QL+Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K    
Sbjct: 238 QLMQPYLAM----IFVNTKTRADELYAYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDF 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   
Sbjct: 294 EYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSD 353

Query: 357 IDAIEKL 363
           I  +EKL
Sbjct: 354 IRELEKL 360


>gi|224127608|ref|XP_002320116.1| predicted protein [Populus trichocarpa]
 gi|222860889|gb|EEE98431.1| predicted protein [Populus trichocarpa]
          Length = 485

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 195/361 (54%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 112 DFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 171

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++    +++   +IL PTRELA Q +   ++ GK+  + V    GG   +    +L +
Sbjct: 172 KIDQDNNFIQV---VILVPTRELALQTSQVCKELGKHLKIQVMATTGGTSLKDDIMRLYQ 228

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P I+ +   +P +RQ L
Sbjct: 229 PVHLLVGTPGRILDLAKKGVCILKDCSMLVLDEADKLLSPEFQPSIEQLIRFLPSSRQIL 288

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++   + +L+ P  I +    +     ++     + +  +K   L  L  S
Sbjct: 289 MFSATFPVTVKDFKDRYLEKPYVINLMDELTLKGITQY---YAFVEERQKVHCLNTLF-S 344

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 345 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 404

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 405 TDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 464

Query: 362 K 362
           +
Sbjct: 465 Q 465


>gi|118578051|sp|Q0U8V9|DBP8_PHANO RecName: Full=ATP-dependent RNA helicase DBP8
          Length = 508

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 133/383 (34%), Positives = 208/383 (54%), Gaps = 20/383 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA + ++P +V ++      +PT IQ   IP +L+  D  G ++TGTGKT +F +P  
Sbjct: 77  VSFASIDVAPWLVASLASMEIKRPTGIQKACIPEILKGRDCIGGSRTGTGKTVAFSVP-- 134

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL+K          LI+ PTRELA Q+ +  +      ++   L+ GG     Q   L 
Sbjct: 135 -ILQKWAEDPSGIFGLIITPTRELAIQIYEQVKAISAPQSMKPILVTGGSDQREQAIALA 193

Query: 121 RGADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSL 173
               V+I TPGR+ +H           +  +  +V DEADR+L  G    IP I+   S+
Sbjct: 194 SRPHVVIATPGRLAEHIKTSGEDTICGLRRVRFVVFDEADRLLAPGRGSMIPDIETCLSV 253

Query: 174 VP--FTRQTLLFSATMTDELQKVSENFLQNPKRI-----EVNTPS-STAETIEHCFVATY 225
           +P    RQTLLF+AT+T E+  +     + P R+     EV+T + +T  ++   ++ T 
Sbjct: 254 LPPKEQRQTLLFTATVTPEVLALKSQ-PRAPGRLPIFVCEVDTETLATPASLSQLYLQTP 312

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
             + K+C L   LL   +  K+ IIFCN+ K    L + L      V A+H  + Q+ R+
Sbjct: 313 VTH-KECYLHVLLLTPLNLTKSVIIFCNRTKTATLLEYMLRMLDHRVTALHSGLKQQDRI 371

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L+ F+    +++VA+D+AARGLDIP+VG V NFDVP   ++YIHR+GRT RAGR G +
Sbjct: 372 SNLARFRAQAARILVATDVAARGLDIPEVGLVVNFDVPRDPDDYIHRVGRTARAGRPGNS 431

Query: 346 FTLVAKEDIKHIDAIEKLIEKKV 368
            T + + D++ + AIE+ +  K+
Sbjct: 432 VTFIGQRDVELVLAIEERVGGKM 454


>gi|242045340|ref|XP_002460541.1| hypothetical protein SORBIDRAFT_02g030210 [Sorghum bicolor]
 gi|241923918|gb|EER97062.1| hypothetical protein SORBIDRAFT_02g030210 [Sorghum bicolor]
          Length = 711

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 125/335 (37%), Positives = 185/335 (55%), Gaps = 18/335 (5%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV-------RMPRTLIL 78
           PIQ  T  LVL  +D+ G A+TG GKT +FVLP+L  L  G  +        R P  ++L
Sbjct: 147 PIQATTFDLVLDGNDLVGRARTGQGKTLAFVLPILESLVNGAHKASRRTEHGRTPSVIVL 206

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QV  +FE YG  + L+   + GG P+  Q   L RG D+++ TPGR+ D   
Sbjct: 207 LPTRELANQVHADFEFYGATFGLSACCVYGGSPYRPQEMALRRGVDIVVGTPGRVKDFIV 266

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--QTLLFSATMTDELQKVSE 196
           +G L + N++  V+DEAD ML+MGF+  ++ I   V      QTLLFSAT+ D + K+S 
Sbjct: 267 KGTLNLKNLKFRVLDEADEMLNMGFVDDVELILGKVEDATKVQTLLFSATLPDWVNKLSM 326

Query: 197 NFLQ-NPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
            FL+ + K +++  N     + +++H  +A     + +  ++  +++        IIF  
Sbjct: 327 RFLKVDRKTVDLVGNEKLKASASVKH--LALPCNKAARAQVIPDIIRCYSHGGRTIIFTE 384

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            K +   L   +        A+HG++ Q  R  IL+ F+ G  Q++VA+++AARGLDI D
Sbjct: 385 TKDSASELSGLIPGS----RALHGDVVQAQREVILAGFRGGKFQVLVATNVAARGLDIND 440

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           V  +   + P   E YIHR GRTGRAG  G A  L
Sbjct: 441 VQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 475


>gi|254473911|ref|ZP_05087305.1| dead-box ATP-dependent rna helicase 53 [Pseudovibrio sp. JE062]
 gi|211957021|gb|EEA92227.1| dead-box ATP-dependent rna helicase 53 [Pseudovibrio sp. JE062]
          Length = 607

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/367 (32%), Positives = 193/367 (52%), Gaps = 6/367 (1%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF---VLPMLTIL 63
           G+SP +  A+    Y   TP+Q   +   L+  D+   AQTG+GKT +F   + P L   
Sbjct: 6   GVSPALSTALEKREYTSLTPVQTAVLDEELKGKDLLVSAQTGSGKTVAFGIAIAPELLGD 65

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
           E+   R   P  L + PTRELA QV+   E         +   +GG+    + + L  GA
Sbjct: 66  EERMGRANEPLALCVAPTRELAIQVSKELEWLYGEAGARITTCVGGMDMRRERRNLSAGA 125

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            +++ TPGR+ DH  RG    + +  +V+DEAD MLD+GF   ++ I    P  R+TLLF
Sbjct: 126 HIVVGTPGRLRDHIERGSFDTSALRTVVLDEADEMLDLGFREDLEFILDAAPEERRTLLF 185

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT+  +++ +++ F ++ +RI   T       IE+  +   A   ++ A++  L   + 
Sbjct: 186 SATVPPQIESLAKRFQRDAQRISTVTNREQHADIEYRAM-QVAPNDRENAIINVLRFYE- 243

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +N IIFC  ++ V +L   L  +GF+V A+ G + Q  R   L   + G  ++ VA+D
Sbjct: 244 -AQNTIIFCGTREMVKHLSARLGNRGFAVVALSGELSQAERNHALGAMRNGRARVCVATD 302

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARG+D+P++  V + D+PN AE  +HR GRTGRAGR G    +V     +    +   
Sbjct: 303 VAARGIDLPNLDLVIHADLPNNAETLLHRSGRTGRAGRKGVCTLVVPHTRRRSATRLLGF 362

Query: 364 IEKKVDW 370
            + K +W
Sbjct: 363 AKVKAEW 369


>gi|323333197|gb|EGA74596.1| Dbp8p [Saccharomyces cerevisiae AWRI796]
          Length = 431

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 143/432 (33%), Positives = 223/432 (51%), Gaps = 37/432 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGLS  +  ++      +PT IQ   IP +L+  D  G A+TG+GKT +F  PMLT
Sbjct: 3   DFKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +  + +     ++L PTRELA Q+A+ F   G + N+ V++++GG     Q   L+R
Sbjct: 63  KWSEDPSGMF---GVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQR 119

Query: 122 GADVLICTPGRILDHF------NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
               +I TPGR+  H         G L+    + LV+DEAD +L   F  ++    S +P
Sbjct: 120 KPHFIIATPGRLAHHIMSSGDDTVGGLM--RAKYLVLDEADILLTSTFADHLATCISALP 177

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPK------RIE----VNTPSSTAETIEHCFVA 223
               RQTLLF+AT+TD+++ +    +Q  K      ++E    V  PS+    IE+  V 
Sbjct: 178 PKDKRQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLK--IEYILVP 235

Query: 224 TYAQYSKKCALLQQLLQSQDTM-KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
            +     K A L QLL  ++   K  IIF N+      L  +L++    V ++H  + Q+
Sbjct: 236 EHV----KEAYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQ 291

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R   L  F+    ++++A+D+A+RGLDIP V  V N+D+P+  + +IHR GRT RAGR 
Sbjct: 292 ERTNSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRI 351

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG--DLSSLNPPLEKIDIAQHNHARKNNPIP 400
           G A + V + D+  I AIE  I KK+   N   D + +   L K+       A++ + + 
Sbjct: 352 GDAISFVTQRDVSRIQAIEDRINKKMTEANKVHDTAVIRKALTKV-----TKAKRESLMA 406

Query: 401 QKSTGFDRRKKN 412
            +   F  RK+ 
Sbjct: 407 MQKENFGERKRQ 418


>gi|319440997|ref|ZP_07990153.1| putative ATP-dependent RNA helicase [Corynebacterium variabile DSM
           44702]
          Length = 523

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 114/347 (32%), Positives = 180/347 (51%), Gaps = 4/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ +GL   VV  +   G V P PIQ   IP  L   DV G   TG+GKT +F LP+++ 
Sbjct: 135 FSGMGLPYPVVNELTHQGLVHPFPIQAAAIPDGLAGRDVLGRGPTGSGKTFTFGLPVISR 194

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G ++   PR  +L PTRELA QVA+    + +     V  ++GG+  +     L R 
Sbjct: 195 LVGGSSKPGHPRAAVLVPTRELAQQVAERLRPFAEAVGQRVIEVVGGVNIKRNFTALARP 254

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR  D   +  L ++ +EI+ +DEAD+M DMGF+P ++ +   +P   Q L 
Sbjct: 255 VDILVATPGRAEDLIGQKALFLDQVEIVALDEADQMADMGFLPQVRRLLDRMPSDAQHLF 314

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +++ + + ++ +P        ++  ++++H       +  +   +L     S 
Sbjct: 315 FSATLDGDIKVLIDQYMNDPVTHSTGEVAAKVDSMDHFLGVVPDKPFRNEVVLALGRAST 374

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T    I+F   K  V      L + G     +HG+  Q +R + +  F +GT  ++VA+
Sbjct: 375 KT----IMFMRTKHTVDRQVKKLVRDGTPAVGLHGDKGQGARTRAIREFTDGTATVLVAT 430

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+DI  V  V + D P   + Y+HR GRT RAG  G   TL 
Sbjct: 431 DIAARGIDIKGVDLVVHIDPPAEHKAYVHRAGRTARAGEKGTVLTLT 477


>gi|156098189|ref|XP_001615127.1| eukaryotic initiation factor [Plasmodium vivax SaI-1]
 gi|148804001|gb|EDL45400.1| eukaryotic initiation factor, putative [Plasmodium vivax]
          Length = 388

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/376 (32%), Positives = 197/376 (52%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++G+   ++  +   G+ KP+ IQ + I  +L   DV   +Q+GTGKT  F +  L  
Sbjct: 17  FENIGIDEGLLRGIYAYGFEKPSAIQQRGIKPILSGRDVILQSQSGTGKTCVFAVGALNC 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + +  +  ++   +IL PTRELA Q            ++T+   IGG       K L  G
Sbjct: 77  VNRNLSETQV---IILSPTRELAEQTQKVCLALADYIHVTIYCCIGGKKMSDDIKALSNG 133

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGRI    N   L    I+ LVIDEAD ML+ GF   + +I   +    Q +L
Sbjct: 134 VHIISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPNTQIVL 193

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  E+ +++  F+  P +I V     T E I+  FV+   +   K   L  L +S 
Sbjct: 194 SSATLPQEVLEITNKFMHRPVKILVKRDELTLEGIKQFFVSIEKE-QWKYETLADLYESL 252

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   ++FCN K  V  L   +++  F+VC +H  + Q  R  I+  F++   ++++++
Sbjct: 253 -TITQAVVFCNTKLKVDWLTKKMQEANFTVCKMHAGMSQSERDDIMLKFRQCKFRVLIST 311

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+  RGLD+ +V  V N+D+PN  E+YIHRIGR+GR GR G A   V  +DIK +  IE+
Sbjct: 312 DIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQ 371

Query: 363 LIEKKVDWLNGDLSSL 378
               ++D +  +++ L
Sbjct: 372 YYSTQIDEMPMNITEL 387


>gi|212716188|ref|ZP_03324316.1| hypothetical protein BIFCAT_01104 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661555|gb|EEB22130.1| hypothetical protein BIFCAT_01104 [Bifidobacterium catenulatum DSM
           16992]
          Length = 690

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/379 (32%), Positives = 193/379 (50%), Gaps = 37/379 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPT-PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           + FA+LG+ P  +  VL A   K   PIQ  T+P  L   D+ G  +TG+GKT +F +P+
Sbjct: 26  LTFAELGV-PGPLVRVLAADDKKTAFPIQADTLPDSLAGRDILGRGRTGSGKTLAFSIPL 84

Query: 60  LTIL---------------------EKGRARVRM-------PRTLILEPTRELAAQVADN 91
           +  L                     ++  A+ R        PR L+L PTRELA Q+ D 
Sbjct: 85  VARLGEVDANEYENMSQFRHEVDRVKQAHAKERRADDFVPHPRGLVLAPTRELANQINDV 144

Query: 92  FEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILV 151
                + Y +    + GG+ +  Q + L+ GAD+++  PGR+ D   +G L ++ +E+ V
Sbjct: 145 LMPLAQIYGINTTTVYGGVRYARQIRDLQAGADIVVACPGRLEDLIEQGALTLDKVEVAV 204

Query: 152 IDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           IDEAD M DMGF+P ++ +   + F  Q +LFSAT+   + +V E FL +PK   V++ +
Sbjct: 205 IDEADEMADMGFLPPVKRLLGQISFDAQIMLFSATLDHGVDEVVETFLSDPKVHSVDSAT 264

Query: 212 STA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
           +T  E   H F  T      +  L++ L   +      I+F   K     L   L + G 
Sbjct: 265 ATVDEMTHHVFKTTQGN---RHELVRTLASGKGRR---ILFTRTKFQTQKLAKDLTQNGI 318

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
               +HGN+ Q  R + L+ F  G + +MVA+D+AARG+D+  V  V   + P   ++++
Sbjct: 319 PAAELHGNLSQNQRDRNLAAFNSGDVNVMVATDVAARGIDVSGVELVVQVEPPEDPKSFL 378

Query: 331 HRIGRTGRAGRHGKAFTLV 349
           HR GRT RAG  G   T++
Sbjct: 379 HRSGRTARAGHSGDVVTII 397


>gi|241204745|ref|YP_002975841.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858635|gb|ACS56302.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 651

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 117/350 (33%), Positives = 190/350 (54%), Gaps = 14/350 (4%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           G+ P +  A+   GY + TP+Q   +   L   D    AQTG+GKT +F L +   L +G
Sbjct: 6   GVVPAIAKALQKRGYAELTPVQKAMLDPALAASDALVSAQTGSGKTVAFGLALAPTLLEG 65

Query: 67  RAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
           R R      P  L++ PTRELA QV    E   +     +   +GG+   ++ + LERGA
Sbjct: 66  RERFGNAAAPLALVIAPTRELALQVKRELEWLFEMTGAVIVSCVGGMDIRSERRSLERGA 125

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            +++ TPGR+ DH  R  L M+ ++  V+DEAD MLD+GF   ++ I    P  R+TL+F
Sbjct: 126 HIVVGTPGRLCDHIRRRALDMSELKAAVLDEADEMLDLGFREDLEFILDAAPDERRTLMF 185

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA----TYAQYSKKCALLQQLL 239
           SAT+   + K+++++ ++  RI     S+ AE  +H  +       A   ++ A++  L 
Sbjct: 186 SATVPAAIAKLAKSYQRDAVRI-----STAAEEKQHIDIEYRALMVAPSDRENAIINVLR 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             + T  N I+FC+ +  V +L      + F+V A+ G + Q  R   L   ++G  ++ 
Sbjct: 241 YYEAT--NAIVFCSTRAAVNHLTARFNNRNFAVVALSGELTQNERTHALQAMRDGRARVC 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +A+D+AARG+D+P +  V + D+P   +  +HR GRTGRAGR G +  +V
Sbjct: 299 IATDVAARGIDLPGLDLVIHADLPTNPDTLLHRSGRTGRAGRKGISAMIV 348


>gi|219888343|gb|ACL54546.1| unknown [Zea mays]
          Length = 525

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 199/361 (55%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 152 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 211

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++ +  +++   +IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 212 KIDQEKNAIQV---VILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRLYQ 268

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++N+  +L++DEAD++L   F P I+ +   +P +RQ L
Sbjct: 269 PVHLLVGTPGRILDLTKKGVCILNDCSMLIMDEADKLLSPEFQPSIEQLIRYLPASRQIL 328

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +++  + +L  P  I +     T + I   +   + +  +K   L  L  S
Sbjct: 329 MFSATFPVTVKEFKDKYLPKPYVINL-MDELTLKGITQFYA--FVEERQKVHCLNTLF-S 384

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 385 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 444

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 445 TDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 504

Query: 362 K 362
           +
Sbjct: 505 Q 505


>gi|255944863|ref|XP_002563199.1| Pc20g06740 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587934|emb|CAP86003.1| Pc20g06740 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 396

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 208/376 (55%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P+++  V   G+ +P+ IQ + I  +++ +DV   AQ+GTGKTA+F    ++ 
Sbjct: 25  FDSMDLKPELLRGVYAYGFERPSAIQQRAIMPIIKGNDVIAQAQSGTGKTATF---SISA 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    V+  + LIL PTRELA Q+       G   +L     IGG         L  G
Sbjct: 82  LQKIDPEVKACQALILAPTRELAQQIQKVVVAIGDFMSLDCHACIGGTNVREDMNALRAG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L    +++ ++DEAD ML  GF   I +I  L+P + Q  L
Sbjct: 142 PQVVVGTPGRVHDMIQRRVLSTTAMKLFILDEADEMLSRGFTEQIYDIFQLLPQSTQVTL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 202 LSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 260

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A+
Sbjct: 261 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQGQRDVIMKEFRSGSSRVLIAT 319

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 320 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMLREIEQ 379

Query: 363 LIEKKVDWLNGDLSSL 378
               +V+ +  +++ L
Sbjct: 380 FYSTQVEEMPMNVADL 395


>gi|294888815|ref|XP_002772599.1| ATP-dependent RNA helicase dbp-4, putative [Perkinsus marinus ATCC
           50983]
 gi|239876947|gb|EER04415.1| ATP-dependent RNA helicase dbp-4, putative [Perkinsus marinus ATCC
           50983]
          Length = 504

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/372 (33%), Positives = 206/372 (55%), Gaps = 9/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS K    + D G+ K TPIQ   IP  L   DV G A+TG+GK+ +F++P++  
Sbjct: 60  FGELPLSRKTQLGLKDHGFSKLTPIQRSAIPYALAGRDVLGEARTGSGKSLAFIIPVIEK 119

Query: 63  LEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         +++ PTREL+AQ+    ++ G +++ +   ++GG  F+ + +K+  
Sbjct: 120 LYRMKWSADDGVGAVLISPTRELSAQIFTVLQQVGSHHDFSAGCVVGGRKFQ-EEQKVFP 178

Query: 122 GADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++CTPGR+L H        ++N+++LV+DEADR+LD+GF   I+ I   +P +RQT
Sbjct: 179 SLSIVVCTPGRLLQHIEETAGSDLSNVQVLVLDEADRILDLGFKKTIELILDALPPSRQT 238

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +Q+++   L NP+ + V+   S+A       +    +  +K   L   L+
Sbjct: 239 LLFSATMRTSVQQLATLALDNPELLSVSQNLSSATPTGLRQLCMTVRLEEKVNSLFSFLK 298

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +    K  I+F +  K V  L  +    + G +V  +HG +    RMK+   F      L
Sbjct: 299 THAQTKI-IVFVSATKQVRFLYETFRRLRPGLAVLELHGGMSLDKRMKVFDQFASKDKGL 357

Query: 299 -MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++ +D+AARG+D P V  V   D P+ A+ YIHR+GRT R  R+G A  L+   +++  
Sbjct: 358 CLICTDVAARGVDFPQVDWVIQMDAPDTADTYIHRVGRTARFDRNGNA--LMFATEVEEA 415

Query: 358 DAIEKLIEKKVD 369
             + +L +KKVD
Sbjct: 416 SLLPELAQKKVD 427


>gi|149038677|gb|EDL92966.1| rCG22008, isoform CRA_c [Rattus norvegicus]
          Length = 638

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/335 (37%), Positives = 191/335 (57%), Gaps = 27/335 (8%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG---RARVRMPRTLILEPTR 82
           PIQ KT   V    D+   A+TGTGKT SF +P++  L+ G   R R R P+ L+L PTR
Sbjct: 63  PIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPTR 122

Query: 83  ELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142
           ELA QV+ +F    K   L+VA   GG P+  Q +++  G D+L+ TPGRI DH   GKL
Sbjct: 123 ELANQVSKDFSDITKK--LSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKL 180

Query: 143 LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR------QTLLFSATMTDELQKVSE 196
            +  ++ +V+DE D+MLDMGF   ++ I   V + +      QTLLFSAT    +  V++
Sbjct: 181 DLTKLKHVVLDEVDQMLDMGFADQVEEIL-CVAYKKDSEDNPQTLLFSATCPHWVFNVAK 239

Query: 197 NFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN-GIIFC 252
            ++++  +++++        A T+EH  +A    ++++ A++  +++     +   IIFC
Sbjct: 240 KYMKSTYEQVDLIGKKTQKAAITVEH--LAIKCHWTERAAVIGDVIRVYSGHQGRTIIFC 297

Query: 253 NQKKNVV----NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
             KK+      N C   + Q     ++HG+I Q+ R   L  F+ G   ++VA+++AARG
Sbjct: 298 ETKKDAQELSQNTCIKQDAQ-----SLHGDIPQKQREITLKGFRNGNFGVLVATNVAARG 352

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           LDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 353 LDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTG 387


>gi|315649347|ref|ZP_07902436.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315275335|gb|EFU38704.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 448

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 200/347 (57%), Gaps = 6/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG++  +   + + G V P+P+Q + IP +L+  DV   +QTGTGKT +++LP+L  
Sbjct: 6   FHTLGITEDLSSRLAEFGIVTPSPVQAEAIPPILEGKDVLATSQTGTGKTLAYLLPVLQS 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     ++  + LIL PT+ELA Q+    E+YG+   + V  LIGG   + Q +KL+  
Sbjct: 66  ID---PEIKGAQKLILAPTQELAVQIVRESERYGETRGIGVLGLIGGAAAKRQIEKLKSH 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ +     KL M+ +  +V+DE D++ ++G    +  I       RQ + 
Sbjct: 123 PQLIVGTPGRVRELIEIRKLKMHQVTTIVVDEVDQVFNLGGAGDVDRILRSALRDRQLVF 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT++ E  ++ +  +  P  I ++    T   +EH +  T  +   K  +L+++++  
Sbjct: 183 LSATVSPETAELVKKEMDQPVEIGIDPEQRTPSALEHYYFVT--EERDKLDMLRRVVRHY 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  +  I+F N  +++  +   L   G +  AI+G+ D+ +R ++L+ F+EG  +L+VAS
Sbjct: 241 NPDR-AIVFVNATEDLAEVEAKLNYLGLNAAAIYGDADKMTRSRVLNAFREGRTKLLVAS 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARGLDI  +G V N+D P  AE+Y HR GRTGR GR G A TLV
Sbjct: 300 DVAARGLDIEGLGMVINYDPPIDAEHYTHRAGRTGRMGRSGMAITLV 346


>gi|221487592|gb|EEE25824.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
          Length = 475

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 120/360 (33%), Positives = 189/360 (52%), Gaps = 7/360 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF +  L  +++  + + G+ KP+PIQ  +IP+ L   ++   A+ GTGKTA+F +P+L 
Sbjct: 103 DFEEYFLRRELLMGIFEKGFEKPSPIQEASIPIALAGKNILARAKNGTGKTAAFSIPLL- 161

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             EK +   R  + LIL PTRELA Q +   +  GK+ N+   +  GG        +L  
Sbjct: 162 --EKCQTSKRYIQGLILVPTRELALQTSAVVKAIGKHMNVQCMVSTGGTSLRDDIMRLYN 219

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL  TPGRILD  N+G   ++N  ++V+DEAD++L   F P ++ +   VP  RQ L
Sbjct: 220 PVHVLCGTPGRILDLANKGVADLSNCHMVVMDEADKLLSAEFQPIVEELIKFVPRERQIL 279

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           ++SAT    ++     +L +   I +    +     ++     + +  +K   L  L  S
Sbjct: 280 MYSATFPVTVKDFKHKYLPDAHEINLMDELTLKGVTQY---YAFVEERQKVHCLNTLF-S 335

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 336 KLQINQAIIFCNSVTRVELLAKKITELGYSCFYIHARMMQSHRNRVFHDFRNGACRCLVS 395

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  L+  +D  ++  IE
Sbjct: 396 SDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINLITYDDRFNLYRIE 455


>gi|156380897|ref|XP_001632003.1| predicted protein [Nematostella vectensis]
 gi|156219053|gb|EDO39940.1| predicted protein [Nematostella vectensis]
          Length = 432

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/369 (33%), Positives = 192/369 (52%), Gaps = 11/369 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGKTA++++P+L 
Sbjct: 48  EFEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLL- 106

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             E+        + L+L PTRELA Q +    + GK+    V +  GG   +    +L  
Sbjct: 107 --ERTDTTKNCIQALVLVPTRELALQTSQICIELGKHMGAQVMVTTGGTSLKDDILRLYN 164

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+LD   +    M+  ++LV+DEAD++L M F   ++ I   +P  RQ L
Sbjct: 165 KVHVIVATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSMDFKKMLEQIIKHLPENRQIL 224

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQQLL 239
           LFSAT    ++   E  L+ P  I +       E   H     YA  +  +K   L  L 
Sbjct: 225 LFSATFPISVRDFKEKHLRKPYEINL-----MDELTLHGVTQYYAFVEEKQKVHCLNTLF 279

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q    +   IIFCN  + V  L   + + GFS   IH  + Q  R ++  +F++G  + +
Sbjct: 280 QKLQ-INQSIIFCNSVQRVELLARKILELGFSCFYIHARMSQSHRNRVFHDFRQGHCRNL 338

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  L+  +D   +  
Sbjct: 339 VCSDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFGHLGVAINLITYDDRFDLYK 398

Query: 360 IEKLIEKKV 368
           IE  ++ ++
Sbjct: 399 IENELDTEI 407


>gi|49119283|gb|AAH73332.1| LOC398189 protein [Xenopus laevis]
          Length = 727

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 128/373 (34%), Positives = 201/373 (53%), Gaps = 16/373 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+   LS + +  +   G     PIQ KT        DV   A+TGTGKT SF +P++ 
Sbjct: 148 DFSKFPLSKETIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVE 207

Query: 62  ILEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L + +   AR R PR +IL PTRELA Q+ +      K   L V+   GG P++ Q   
Sbjct: 208 KLNEDQQPLARGRAPRVIILTPTRELAIQITNEIRSITKK--LKVSCFYGGTPYQQQVFA 265

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV---- 174
           ++ G D L+ TPGR+ D     +L +  ++ +V+DE D M DMGF   ++ I S+     
Sbjct: 266 IKDGIDFLVGTPGRVRDLVQNYRLDLTTLKHVVLDEVDMMFDMGFSEQVEEILSVRYKAD 325

Query: 175 -PFTRQTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSK 230
                QTLLFSAT  D +  +++ +++   ++I++  +     A T+EH  +A     S+
Sbjct: 326 PEENPQTLLFSATCPDWMYNMAKKYMRKQFEKIDLIGHRSQKAATTVEH--LAIECTRSQ 383

Query: 231 KCALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K A+L  L+Q    +    IIFC+ K     L  S      S  ++HG++ Q+ R  +L 
Sbjct: 384 KAAVLGDLVQVYSGSHGKTIIFCDSKLEAHTLATSCGSLKQSAKSLHGDLQQKEREVVLK 443

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F++GT ++++A+++AARGLDIP+V  V  +  P  A+ Y+HR GRTGRAGR G   +L 
Sbjct: 444 GFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCISLY 503

Query: 350 AKEDIKHIDAIEK 362
              +  ++  +E+
Sbjct: 504 EPWERHYLRNVER 516


>gi|6635383|gb|AAF19805.1| EIF4A protein [Brassica oleracea]
          Length = 354

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/361 (34%), Positives = 190/361 (52%), Gaps = 11/361 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           + KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  L+    + +    L+L P
Sbjct: 1   FEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYTLVQCQ---ALVLAP 57

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TRELA Q+       G    + V   +GG       + L+ G  V++ TPGR+ D   R 
Sbjct: 58  TRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQ 117

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200
            L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +FSATM  E  +++  F+ 
Sbjct: 118 SLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMN 177

Query: 201 NPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLLQSQDTMKNGIIFCNQKKN 257
            P RI V     T E I+  +V    +  K    C L + L  +Q      +IF N ++ 
Sbjct: 178 KPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQ-----SVIFVNTRRK 232

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
           V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ +DL ARG+D+  V  V
Sbjct: 233 VDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLV 292

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
            NFD+P + ENY+HRIGR+GR GR G A   +  +D + +  I+K     V+ L  +++ 
Sbjct: 293 INFDLPTQPENYLHRIGRSGRFGRKGVAINFMTTDDERMLSDIQKFYNVVVEELPSNVAD 352

Query: 378 L 378
           L
Sbjct: 353 L 353


>gi|238878470|gb|EEQ42108.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 581

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 119/376 (31%), Positives = 207/376 (55%), Gaps = 29/376 (7%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEK 65
            ++ K+V  +   GY +PT +Q  +IPL L++ DV G+A+TG+GKT +F++P+L  IL  
Sbjct: 174 SINDKLVSIISQLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSI 233

Query: 66  GRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               ++       P  LIL PTRELA Q+    EK+ K     V  +IGG  ++    K+
Sbjct: 234 DENYLKYEKISNEPVGLILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQDTINKI 293

Query: 120 ER-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++ G  +++ TPGR++D   R  + ++    LV+DEADRM+DMGF   +  +   +P  +
Sbjct: 294 DQTGVHLIVATPGRLVDSIERKIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEK 353

Query: 179 Q----------------TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF- 221
           Q                T++F+AT++  ++K+++ +L +P  + +       + I   F 
Sbjct: 354 QLSSTIDGRIFHLEKRSTMMFTATISPTVEKLTKKYLIDPGYLYIGGAGEALDNISQSFE 413

Query: 222 -VATYAQYSKKCALLQQLLQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
            +++    + K   L ++++S   +      IIF N K    +L   L     +   IHG
Sbjct: 414 FLSSATTEATKFNKLIKIIRSHWRVTENPLIIIFANFKHVCDSLSQELSSNDINNVVIHG 473

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           +  Q  R + ++NF+    ++++A+D+AARG+DIP+V  V N+ +  + + YIHRIGRTG
Sbjct: 474 SKSQDMREQAITNFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTG 533

Query: 338 RAGRHGKAFTLVAKED 353
           RAG  G++FT ++ +D
Sbjct: 534 RAGNLGESFTFISDQD 549


>gi|213051685|ref|ZP_03344563.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213423865|ref|ZP_03356845.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213425879|ref|ZP_03358629.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|289825740|ref|ZP_06544908.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 361

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 114/303 (37%), Positives = 176/303 (58%), Gaps = 7/303 (2%)

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
           +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K LE G D+LI 
Sbjct: 21  KVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIG 80

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL--LFSAT 186
           T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   Q L  LFSAT
Sbjct: 81  TTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLNMLFSAT 140

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQSQDTM 245
           ++  +++++   + N + +EV     T   I E  F   Y    +K  LLQ L++ ++  
Sbjct: 141 LSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLLQTLIE-EEWP 196

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G + ++VA+D+A
Sbjct: 197 DRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVA 256

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++ AIE  I 
Sbjct: 257 ARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIESYIG 316

Query: 366 KKV 368
             +
Sbjct: 317 HSI 319


>gi|296877050|ref|ZP_06901091.1| ATP-dependent RNA helicase DbpA [Streptococcus parasanguinis ATCC
           15912]
 gi|296431911|gb|EFH17717.1| ATP-dependent RNA helicase DbpA [Streptococcus parasanguinis ATCC
           15912]
          Length = 453

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 196/368 (53%), Gaps = 13/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +    P +  A+ +  + + T +Q K IP+VL  +D+ G ++TG+GKT +F+LP+ 
Sbjct: 7   MKFTEFNFKPYIQEALKEINFREATEVQEKLIPIVLAGNDLVGESKTGSGKTHTFLLPIF 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L +   +V     +I  P+RELA Q+     +   +    + ++  +GG     Q +K
Sbjct: 67  QTLNEESEQVE---AVITAPSRELATQIYQAARQIASHSEKEIRIVNYVGGTDKSRQIEK 123

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+ +   ++I TPGRI D    G L ++     V+DEAD  LDMGF+  +  I S +P  
Sbjct: 124 LQVKQPHIVIGTPGRIYDLVASGDLAIHKAHTFVVDEADMTLDMGFLSTVDKIASRLPQQ 183

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  +ETI++  V+T  +        +Q
Sbjct: 184 LQFLVFSATIPQKLQPFLKKYLSNPVMEQIKTKTVISETIDNWLVSTKGRDKN-----EQ 238

Query: 238 LLQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + Q   T++    +IF N K    +L   L  QG  V  IHG+I  R R +I++  K   
Sbjct: 239 IYQLTKTLQPYLAMIFVNTKTRADDLHAYLVAQGLKVAKIHGDIPPRERKRIMNQVKNLD 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D  
Sbjct: 299 FEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGVAITLYQPSDDS 358

Query: 356 HIDAIEKL 363
            I  +EK+
Sbjct: 359 DIRELEKM 366


>gi|295669632|ref|XP_002795364.1| pre-mRNA-processing ATP-dependent RNA helicase prp5
           [Paracoccidioides brasiliensis Pb01]
 gi|226285298|gb|EEH40864.1| pre-mRNA-processing ATP-dependent RNA helicase prp5
           [Paracoccidioides brasiliensis Pb01]
          Length = 532

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 188/340 (55%), Gaps = 10/340 (2%)

Query: 36  LQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM--PRTLILEPTRELAAQVADNFE 93
           +   DV G+A+TG+GKT +F+LPM   ++  R    M  P  L++ PTRELA Q+    +
Sbjct: 1   MSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLENMEGPIGLVMTPTRELATQIHKECK 60

Query: 94  KYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF--NRGKLL-MNNIEIL 150
            + K  NL      GG P + Q  +L+RGA++++CTPGR++D    N G++  +  +  +
Sbjct: 61  PFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYV 120

Query: 151 VIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           V+DEADRM DMGF P +  I   V   RQT+LFSAT    ++ ++   L  P  I V   
Sbjct: 121 VLDEADRMFDMGFEPQVMKILGNVRPQRQTVLFSATFPRNMEALARKTLTKPVEIVVGGR 180

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQL--LQSQDTMKNG--IIFCNQKKNVVNLCHSLE 266
           S  A  I    V    + +K   LL  L  L + D  ++   +IF ++++    L   L 
Sbjct: 181 SVVAPEITQ-IVEVRNEDTKFVRLLALLGDLYADDNNEDARTLIFVDRQEAADGLLRDLM 239

Query: 267 KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
            +G+   +IHG  DQ  R   +++FK G   +++A+ +AARGLD+  +  V N+D PN  
Sbjct: 240 HKGYPCMSIHGGKDQVDRDSTIADFKAGVFPILIATSVAARGLDVKQLKLVINYDAPNHL 299

Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           E+Y+HR GRTGRAG  G A T + +   ++   I K +++
Sbjct: 300 EDYVHRAGRTGRAGNTGTAVTFLTEVQERYSVDISKALKQ 339


>gi|73994643|ref|XP_850776.1| PREDICTED: similar to DEAD-box protein 54 (ATP-dependent RNA
           helicase DP97) isoform 3 [Canis familiaris]
          Length = 889

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 193/367 (52%), Gaps = 18/367 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F++PM   
Sbjct: 98  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFER 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 158 LKTHSAQTGA-RALILSPTRELALQTMKFTKELGKFTGLRTALILGGDKMEDQFAALHEN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIE--------ILVIDEADRMLDMGFIPYIQNITSLV 174
            D++I TPGR++       L + ++E        +L      R+ +MGF   +Q I   +
Sbjct: 217 PDIIIATPGRLVHVAVEMNLKLQSVEYAAGMDGPLLTPPLFPRLFEMGFAEQLQEIIGRL 276

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P   QT+LFSAT+   L + +   L  P  I ++  +   E ++  F     +   K A+
Sbjct: 277 PGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFF--LVREDTKAAV 334

Query: 235 LQQLLQS----QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           L  LL++    QD     ++F   K +   L   L  QG S   I+  +DQ +R   L+ 
Sbjct: 335 LLHLLRTVVRPQDQT---VVFVATKHHAEYLSELLTTQGVSCTHIYSALDQTARKINLAK 391

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F       ++ +DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA
Sbjct: 392 FTHNKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVA 451

Query: 351 KEDIKHI 357
            +++ ++
Sbjct: 452 PDEVPYL 458


>gi|126138430|ref|XP_001385738.1| RNA helicase of DEAD box family [Scheffersomyces stipitis CBS 6054]
 gi|146286118|sp|A3LWX3|DHH1_PICST RecName: Full=ATP-dependent RNA helicase DHH1
 gi|126093016|gb|ABN67709.1| RNA helicase of DEAD box family [Scheffersomyces stipitis CBS 6054]
          Length = 509

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/360 (34%), Positives = 187/360 (51%), Gaps = 7/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++  + +AG+ KP+PIQ ++IP+ L   DV   A+ GTGKTASF++P L  
Sbjct: 32  FEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDVLARAKNGTGKTASFIIPSL-- 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            ++ + ++   + LIL PTRELA Q +      GK+  +   +  GG   +    +L   
Sbjct: 90  -QQIKPKLNKIQALILVPTRELALQTSQVVRTLGKHLGIQCMVTTGGTSLKDDILRLNDP 148

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             VL+ TPGR+LD   R    ++   + V+DEAD+ML   F   I+ I    P  RQ+LL
Sbjct: 149 VHVLVGTPGRVLDLAARSVADLSECPLFVMDEADKMLSREFKGIIEQILEFFPKNRQSLL 208

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    ++   +  L  P  I +     T   I   +   + +  +K   L  L  S+
Sbjct: 209 FSATFPLAVKSFMDKHLNKPYEINL-MDELTLRGITQYYA--FVEEKQKLHCLNTLF-SK 264

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   IIFCN    V  L   + + G+S    H  + Q++R K+   F++G ++ +V S
Sbjct: 265 LQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCS 324

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L++  D   +  IE+
Sbjct: 325 DLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYSLYKIEQ 384


>gi|125839926|ref|XP_001340860.1| PREDICTED: probable ATP-dependent RNA helicase DDX6 [Danio rerio]
          Length = 483

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/361 (33%), Positives = 192/361 (53%), Gaps = 8/361 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 89  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 148

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            ++  +  ++    ++L PTRELA QV+       K+   + V    GG        +L+
Sbjct: 149 RIDLKKDYIQ---AIVLVPTRELALQVSQISINMSKHLGGIKVMATTGGTNLRDDIMRLD 205

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   ++ +++ V+DEAD++L   F+  I++I S +P  RQ 
Sbjct: 206 EIVHVIIATPGRILDLIKKGVAKVDKVQMAVMDEADKLLSQDFVVLIEDIISFLPKKRQI 265

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK     LQ P  I +     T + I   +   Y    +K   L  L  
Sbjct: 266 LLYSATFPISVQKFMTKHLQKPYEINL-MDELTLKGITQYYA--YVTERQKVHCLNTLF- 321

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 322 SRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYRNRVFHDFRNGLCRNLV 381

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 382 CTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLITSEDRFNLKGI 441

Query: 361 E 361
           E
Sbjct: 442 E 442


>gi|322386910|ref|ZP_08060534.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           cristatus ATCC 51100]
 gi|321269192|gb|EFX52128.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           cristatus ATCC 51100]
          Length = 447

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 194/368 (52%), Gaps = 13/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ T +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFNFKDYIQEALKDLNFVEATEVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L++    V+    +I  P+RELA Q+   A     + +   + VA  +GG     Q  
Sbjct: 61  QELDEEADSVQ---AVITAPSRELATQIYQAARQLASFSEQ-EIRVANYVGGTDKARQIG 116

Query: 118 KLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           KLE     ++I TPGRI D    G L ++     V+DEAD  LDMGF+  +  I + +P 
Sbjct: 117 KLESSQPHIVIGTPGRIYDLVESGDLAIHKAHTFVVDEADMTLDMGFLETVDRIAARLPK 176

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALL 235
             Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  ++T  +  + +   +
Sbjct: 177 DLQFLVFSATIPQKLQPFLKKYLSNPVMEQIKTKTVIADTIDNWLLSTKGRDKNAQIYEI 236

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            Q+LQ    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K   
Sbjct: 237 SQILQPYLAM----IFVNTKTRADELQVYLTAQGLKVAKIHGDIPPRERKRIMNQVKNLD 292

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D  
Sbjct: 293 FEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDS 352

Query: 356 HIDAIEKL 363
            I  +EKL
Sbjct: 353 DIRELEKL 360


>gi|258538949|ref|YP_003173448.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
 gi|257150625|emb|CAR89597.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
          Length = 448

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/351 (35%), Positives = 195/351 (55%), Gaps = 14/351 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L P V+  +   G  +PTPIQ K IP +L+  ++ G +QTG+GKT +F++P+L++
Sbjct: 5   FKQYQLKPFVIAGLDAMGITQPTPIQKKVIPALLRGENLVGQSQTGSGKTHAFLVPLLSL 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE- 120
           ++      ++   +I  P+RELA Q+    ++  +    + ++ L+GG+  + Q  KL+ 
Sbjct: 65  VDPNEDATQV---VITAPSRELANQIYAVAQQLTQTEPAIRISRLVGGMDKQKQIDKLQA 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V I TPGRILD   R  L+  ++   V+DEAD  LDMGF+  +  I S  P   Q 
Sbjct: 122 HQPHVAIGTPGRILDMIKRYDLVPASVRHFVVDEADMTLDMGFLETVDAIASSFPEHLQM 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT+  +L+     ++ +P  IE+   S  A+T+E+  +A  A+   K  L+ QL+ 
Sbjct: 182 AVFSATIPQKLEPFLRKYMDHPTVIELKPQSVIADTVENILIA--AKGRDKNELIYQLV- 238

Query: 241 SQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              TM +    +IF N K +V  +   L+ QG  V  IHG +  R R +I+    +   Q
Sbjct: 239 ---TMGHPFLVLIFANTKTSVDAIHDYLKHQGLKVAKIHGGVQPRERRRIMKEVADLKYQ 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +VA+DLAARG+DI  V  V N ++P   E +IHR+GRTGR G  G A TL
Sbjct: 296 YVVATDLAARGIDIKGVSMVINAEIPRDQEFFIHRVGRTGRNGLPGTAITL 346


>gi|227888706|ref|ZP_04006511.1| ATP-dependent RNA helicase [Lactobacillus johnsonii ATCC 33200]
 gi|227850733|gb|EEJ60819.1| ATP-dependent RNA helicase [Lactobacillus johnsonii ATCC 33200]
          Length = 461

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/365 (33%), Positives = 201/365 (55%), Gaps = 11/365 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  + P++   +    + KPT +Q   IP +L + +V   A TG+GKT ++++P+L +
Sbjct: 8   FQNEKIRPELQAGLEKINFKKPTKVQSSVIPALLNKKNVVVQAATGSGKTHAYLIPILNM 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQ---VADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +++      + + ++  P+RELA Q   VA    +     N+++  L GG     Q +K 
Sbjct: 68  IDENAP---VTQAIVTAPSRELANQLYKVARQL-RDASGLNISIEYLGGGNDRNRQIEKA 123

Query: 120 E-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           E R   ++I TPGR+ D  ++  + + N++  +IDEAD  LDMGF+  +  I S +    
Sbjct: 124 ESRAPQLIIATPGRLHDFASKKFINLENVKAFIIDEADMTLDMGFLSQMDEIMSKLDKKA 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
               FSAT+  +L+     ++  P+ I ++ P+  A TI++  +   ++  KK  L + L
Sbjct: 184 VLGAFSATIPVKLENFLRKYMSKPEFIVIDNPAIIAPTIQNDLIDVGSR-DKKSILYKLL 242

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q  +   ++F N KK V  L   L +QG  V  IHG I +R R +I+   +EG  Q 
Sbjct: 243 TMGQPYL--ALVFANTKKTVDELTDYLVEQGLKVAKIHGGITERERKRIIRQVREGQYQY 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARG+D+P V  V N+++P   E  IHRIGRTGR G  G A TL+  +++  I+
Sbjct: 301 VVASDLAARGIDVPGVSLVVNYEIPKDLEFVIHRIGRTGRNGLEGHAITLIYDDEMSQIE 360

Query: 359 AIEKL 363
            +EKL
Sbjct: 361 DLEKL 365


>gi|259418800|ref|ZP_05742717.1| ATP-dependent rna helicase, dead/deah box family [Silicibacter sp.
           TrichCH4B]
 gi|259345022|gb|EEW56876.1| ATP-dependent rna helicase, dead/deah box family [Silicibacter sp.
           TrichCH4B]
          Length = 681

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/366 (33%), Positives = 194/366 (53%), Gaps = 6/366 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TIL-EKGR 67
           P +  A+   GY   TP+Q       L   D+   AQTG+GKT  F L +  TIL E G+
Sbjct: 3   PTLQQALERRGYTSLTPVQEAVSDPELAGADLLVSAQTGSGKTVGFGLAIAPTILNEDGQ 62

Query: 68  -ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
             R   P  L++ PTRELA QV         +    +A  +GG+    + + LERGA ++
Sbjct: 63  FERAASPLALVIAPTRELALQVKRELSWLYGDAGAVLASCVGGMDMRDERRALERGAHIV 122

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+ DH  RG + ++ +  +V+DEAD MLD+GF   ++ I    P  RQTLLFSAT
Sbjct: 123 VATPGRLRDHITRGSIDLSGVAAVVLDEADEMLDLGFREDLEFILEETPEDRQTLLFSAT 182

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
           ++  +  +++ +  + +RI     S     I + F    A +  + A++  L   +    
Sbjct: 183 VSKPIAALAQTYQNDAQRISTINKSEQHSDISY-FSHVVAPHDIENAIINVLRFHE--AP 239

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           N I+F N +  V  L   L  +GF V A+ G + Q  R   L   ++G  ++ VA+D+AA
Sbjct: 240 NAIVFANTRAAVNRLLTRLSNRGFQVVALSGELSQSERAGALQAMRDGRARICVATDVAA 299

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RG+D+P++  V + D+P+  E  +HR GRTGRAGR G +  +V    ++  + + +  + 
Sbjct: 300 RGIDLPNLDLVVHADLPSSHETLLHRSGRTGRAGRKGASALMVTPRSVRKAERLLRDAKL 359

Query: 367 KVDWLN 372
             +W++
Sbjct: 360 SAEWVD 365


>gi|168333928|ref|ZP_02692160.1| ATP-dependent RNA helicase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 472

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 107/293 (36%), Positives = 171/293 (58%), Gaps = 4/293 (1%)

Query: 77  ILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           +L PTRELA Q+A   +K      ++ +  + GG   E Q   L R   +++ TPGR++D
Sbjct: 1   MLCPTRELAVQIATEMKKICAHKKDIGILAVYGGESIEKQLAGLRRRPQIVVGTPGRVMD 60

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
           H  R  L +  +++LV+DEAD ML+MGF   I  I   +P  RQ LLFSAT+   + +++
Sbjct: 61  HMRRKTLKLGALKMLVLDEADEMLNMGFREDIDTILESIPENRQFLLFSATLPKAIMEIA 120

Query: 196 ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
             +  N  +I       T +TI   ++    +  KK  +L +L+ S +  K  ++FCN K
Sbjct: 121 NKYQTNAVKINTTKKQVTVKTISQHYLDVNEK--KKSEVLARLIDSNN-FKLMLVFCNTK 177

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           K V +LC  L  +G+   A+HG++ Q  R  +++ F+ G + +++A+D+AARG+DI DV 
Sbjct: 178 KRVDDLCKDLMSRGYKAEALHGDMKQIHRDSVMNKFRRGIVDILIATDVAARGIDIDDVD 237

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            VFN+D+P   E Y+HRIGRTGRA R G +++ V  ++I  +  IE+    K+
Sbjct: 238 AVFNYDLPIDDEYYVHRIGRTGRANRKGTSYSFVCGKEIYKLRQIERYTNSKI 290


>gi|116252251|ref|YP_768089.1| cold-shock DEAD-box protein A (ATP-dependent RNA helicase DEAD)
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256899|emb|CAK07993.1| putative cold-shock DEAD-box protein A (ATP-dependent RNA helicase
           DEAD) [Rhizobium leguminosarum bv. viciae 3841]
          Length = 651

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 117/350 (33%), Positives = 190/350 (54%), Gaps = 14/350 (4%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           G+ P +  A+   GY + TP+Q   +   L   D    AQTG+GKT +F L +   L +G
Sbjct: 6   GVVPAIAKALQKRGYAELTPVQKAMLDPALAASDALVSAQTGSGKTVAFGLALAPTLLEG 65

Query: 67  RAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
           R R      P  L++ PTRELA QV    E   +     +   +GG+   ++ + LERGA
Sbjct: 66  RERFGNAGAPLALVIAPTRELALQVKRELEWLFEMTGAVIVSCVGGMDIRSERRSLERGA 125

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            +++ TPGR+ DH  R  L M+ ++  V+DEAD MLD+GF   ++ I    P  R+TL+F
Sbjct: 126 HIVVGTPGRLCDHIRRRALDMSELKAAVLDEADEMLDLGFREDLEFILDAAPDERRTLMF 185

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA----TYAQYSKKCALLQQLL 239
           SAT+   + K+++++ ++  RI     S+ AE  +H  +       A   ++ A++  L 
Sbjct: 186 SATVPAAIAKLAKSYQRDAVRI-----STAAEEKQHIDIEYRALMVAPSDRENAIINVLR 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             + T  N I+FC+ +  V +L      + F+V A+ G + Q  R   L   ++G  ++ 
Sbjct: 241 YYEAT--NAIVFCSTRAAVNHLTARFNNRNFAVVALSGELTQNERTHALQAMRDGRARVC 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +A+D+AARG+D+P +  V + D+P   +  +HR GRTGRAGR G +  +V
Sbjct: 299 IATDVAARGIDLPGLDLVIHADLPTNPDTLLHRSGRTGRAGRKGISAMIV 348


>gi|50551911|ref|XP_503430.1| YALI0E01782p [Yarrowia lipolytica]
 gi|74634065|sp|Q6C7D2|HAS1_YARLI RecName: Full=ATP-dependent RNA helicase HAS1
 gi|49649299|emb|CAG79009.1| YALI0E01782p [Yarrowia lipolytica]
          Length = 605

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/393 (32%), Positives = 219/393 (55%), Gaps = 16/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ + LS   + ++ D G+   TP+Q KTIP +L   DV G A+TG+GKT +F++P + +
Sbjct: 133 FSTIPLSENTMQSLKDMGFETMTPVQEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEM 192

Query: 63  LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L K + + R     +++ PTRELA Q+         N++ T+ ++IGG     + +KL +
Sbjct: 193 LRKLKFKPRNGTGVIVVSPTRELALQIYGVARDLMANHSQTLGIVIGGNNRRQEEEKLNK 252

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           G ++L+CTPGR+LDH  N    +  N++ L+IDEADR+L++GF   ++ I  ++P  RQ+
Sbjct: 253 GVNLLVCTPGRLLDHLQNSQGFVFKNLKALIIDEADRILEIGFEQEMKEIIKILPKERQS 312

Query: 181 LLFSATMTDELQKVSE-NFLQNPKRIEVN--TPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +LFSAT T +++ ++  +  + P  + V+    SSTAE +E  +V       K+  LL  
Sbjct: 313 MLFSATQTTKVEDLARISLKKGPLYLNVDEHNVSSTAEGLEQGYVV--CDSDKRFLLLFS 370

Query: 238 LLQSQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            L+ ++  K  I+F   CN  K    L + ++     V  +HG   Q+ R      F   
Sbjct: 371 FLK-RNAGKKIIVFLSSCNSVKFYGELLNYID---LPVLDLHGKQKQQKRTNTFFEFINA 426

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R    GK+   +   ++
Sbjct: 427 KQGVLICTDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVGRTARGSASGKSIMFLTPSEL 486

Query: 355 KHIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
             +  ++  K+   + ++ N  ++++   LEK+
Sbjct: 487 GFLRYLKAAKVPLNEYEFPNKKIANVQSQLEKL 519


>gi|68484469|ref|XP_713845.1| hypothetical protein CaO19.8289 [Candida albicans SC5314]
 gi|68484548|ref|XP_713805.1| hypothetical protein CaO19.672 [Candida albicans SC5314]
 gi|74656226|sp|Q59W52|PRP28_CANAL RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|46435319|gb|EAK94703.1| hypothetical protein CaO19.672 [Candida albicans SC5314]
 gi|46435361|gb|EAK94744.1| hypothetical protein CaO19.8289 [Candida albicans SC5314]
          Length = 581

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 119/376 (31%), Positives = 207/376 (55%), Gaps = 29/376 (7%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEK 65
            ++ K+V  +   GY +PT +Q  +IPL L++ DV G+A+TG+GKT +F++P+L  IL  
Sbjct: 174 SINDKLVSIISQLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSI 233

Query: 66  GRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               ++       P  LIL PTRELA Q+    EK+ K     V  +IGG  ++    K+
Sbjct: 234 DENYLKYEKISNEPVGLILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQDTINKI 293

Query: 120 ER-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++ G  +++ TPGR++D   R  + ++    LV+DEADRM+DMGF   +  +   +P  +
Sbjct: 294 DQTGVHLIVATPGRLVDSIERKIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEK 353

Query: 179 Q----------------TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF- 221
           Q                T++F+AT++  ++K+++ +L +P  + +       + I   F 
Sbjct: 354 QLSSTIDGRIFHLEKRSTMMFTATISPTVEKLTKKYLIDPGYLYIGGAGEALDNISQSFE 413

Query: 222 -VATYAQYSKKCALLQQLLQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
            +++    + K   L ++++S   +      IIF N K    +L   L     +   IHG
Sbjct: 414 FLSSATTEATKFNKLIKIIRSHWRVTENPLIIIFANFKHVCDSLSQELSSNDINNVVIHG 473

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           +  Q  R + ++NF+    ++++A+D+AARG+DIP+V  V N+ +  + + YIHRIGRTG
Sbjct: 474 SKSQDMREQAITNFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTG 533

Query: 338 RAGRHGKAFTLVAKED 353
           RAG  G++FT ++ +D
Sbjct: 534 RAGNLGESFTFISDQD 549


>gi|169883094|gb|ABZ02207.1| VASA [Trichosurus vulpecula]
          Length = 704

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/357 (35%), Positives = 192/357 (53%), Gaps = 20/357 (5%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRM-- 72
           +  AGY K TP+Q   IP++L   D+   AQTG+GKTA+F+LP+L  ++  G    R   
Sbjct: 281 ITKAGYTKLTPVQKYGIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRDGVTASRFKD 340

Query: 73  ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              P  +I+ PTREL  Q+     K+     +   ++ GG       +++ +G ++L  T
Sbjct: 341 QQEPECIIVAPTRELINQIFLEARKFSFGTCVRPVVIYGGTQLGHSIRQIMQGCNILCAT 400

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSA 185
           PGR++D   + K+ +  I  LV+DEADRMLDMGF P ++ + S         RQTL+FSA
Sbjct: 401 PGRLMDIIGKEKIGLGQIRYLVLDEADRMLDMGFGPEMKKLISFPGMPSKEQRQTLMFSA 460

Query: 186 TMT-DELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL--LQ 240
           T      +  +  FL+N     + V         ++   V    QYSK+  L++ L  + 
Sbjct: 461 TFPRGNFKDWAGEFLKNLTICLVAVGQVGGACSDVQQT-VLQVGQYSKREKLVEILRNIG 519

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            + TM    +F   KK    +   L ++  S  +IHG+ +QR R + L +F+ G   ++V
Sbjct: 520 EERTM----VFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLV 575

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           A+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  GKA +    E   H+
Sbjct: 576 ATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGKAISFFDPEPDSHL 632


>gi|331701287|ref|YP_004398246.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128630|gb|AEB73183.1| DEAD/DEAH box helicase domain protein [Lactobacillus buchneri NRRL
           B-30929]
          Length = 453

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/353 (35%), Positives = 194/353 (54%), Gaps = 10/353 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++  L P ++ AV +  +  PTP+Q K +P+++Q  DV G + TG+GKT +F+LP+  
Sbjct: 3   NFSEFNLKPFLLDAVKELNFSHPTPVQEKVMPVIMQGRDVVGQSATGSGKTHAFLLPIFN 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKL 119
            L+  +  V+    +I  P+RELA Q+ D  ++  K+    ++    IGG     Q KK+
Sbjct: 63  QLDPAKDEVQ---AVITTPSRELAYQIIDAAKQLAKHSPEPISTGAYIGGTDKARQEKKI 119

Query: 120 E-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +     +++ TPGRI D    G L ++    LVIDEAD  LDMGF+  + NI +      
Sbjct: 120 QHEQPQLVVGTPGRIWDLIQNGGLDVHTASQLVIDEADMTLDMGFLDVVDNIAASFGKHV 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT+  ++    + ++ NP   E+   +  + TI++  ++T  Q   K  L+ +L
Sbjct: 180 QMMVFSATIPQKINVFLKKYMVNPFIEEIPVSTIISPTIDNWLISTKGQ--DKNQLIYKL 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   +     +IF N +K V  L   L+ QG  V  IHG +  R R +I+   K    Q 
Sbjct: 238 LTIGEPYLV-LIFANTRKRVEELTEYLKGQGLKVAMIHGGLKPRERKQIMKRVKNLEFQF 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNR-AENYIHRIGRTGRAGRHGKAFTLVA 350
           +VA+DLAARG+DI  V  V N D+P    E +IHR+GRTGR G  G + TL +
Sbjct: 297 VVATDLAARGIDIEGVSDVINDDIPTEDLEFFIHRVGRTGRNGMSGTSITLYS 349


>gi|229553792|ref|ZP_04442517.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus LMS2-1]
 gi|229312844|gb|EEN78817.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus LMS2-1]
          Length = 448

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/351 (35%), Positives = 195/351 (55%), Gaps = 14/351 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L P V+  +   G  +PTPIQ K IP +L+  ++ G +QTG+GKT +F++P+L++
Sbjct: 5   FKQYQLKPFVIAGLDAMGITQPTPIQKKVIPALLRGENLVGQSQTGSGKTHAFLVPLLSL 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE- 120
           ++      ++   +I  P+RELA Q+    ++  +    + ++ L+GG+  + Q  KL+ 
Sbjct: 65  VDPNEDATQV---VITAPSRELANQIYAVAQQLTQTEPAIRISRLVGGMDKQKQIDKLQA 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V I TPGRILD   R  L+  ++   V+DEAD  LDMGF+  +  I S  P   Q 
Sbjct: 122 HQPHVAIGTPGRILDMIKRYDLVPASVRHFVVDEADMTLDMGFLETVDAIASSFPEHLQM 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT+  +L+     ++ +P  IE+   S  A+T+E+  +A  A+   K  L+ QL+ 
Sbjct: 182 AVFSATIPQKLEPFLRKYMDHPTVIELKPQSVIADTVENILIA--AKGRDKNELIYQLV- 238

Query: 241 SQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              TM +    +IF N K +V  +   L+ QG  V  IHG +  R R +I+    +   Q
Sbjct: 239 ---TMGHPFLVLIFANTKTSVDAIHDYLKHQGLKVAKIHGGVQPRERRRIMKEVADLKYQ 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +VA+DLAARG+DI  V  V N ++P   E +IHR+GRTGR G  G A TL
Sbjct: 296 YVVATDLAARGIDIKGVSMVINAEIPRDQEFFIHRVGRTGRNGLPGTAITL 346


>gi|218508404|ref|ZP_03506282.1| ATP-dependent RNA helicase protein [Rhizobium etli Brasil 5]
          Length = 375

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 119/350 (34%), Positives = 191/350 (54%), Gaps = 14/350 (4%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           G+ P +  A+   GY + TP+Q   +   L   D    AQTG+GKT +F L +   L +G
Sbjct: 6   GVVPAIAKALQKRGYAELTPVQKSMLDPDLAASDALVSAQTGSGKTVAFGLALAPTLLEG 65

Query: 67  RAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
             R      P  L++ PTRELA QV    E   +     +A  +GG+   ++ + LERGA
Sbjct: 66  SERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRALERGA 125

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            +++ TPGR+ DH  R  L M++++  V+DEAD MLD+GF   ++ I    P  R+TL+F
Sbjct: 126 HIVVGTPGRLCDHIRRRALDMSDLKAAVLDEADEMLDLGFREDLEFILDSAPDERRTLMF 185

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA----TYAQYSKKCALLQQLL 239
           SAT+   + K+++++ ++  RI     S+ AE  +H  +       A   ++ A++  L 
Sbjct: 186 SATVPAAIAKLAKSYQRDAVRI-----STAAEEKQHVDIEYRALMVAPSDRENAIINVLR 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             + T  N I+FC+ +  V +L      + FSV A+ G + Q  R   L   ++G  ++ 
Sbjct: 241 YYEAT--NAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERSHALQAMRDGRARVC 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +A+D+AARG+D+P +  V + D+P   E  +HR GRTGRAGR G +  +V
Sbjct: 299 IATDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIV 348


>gi|169351091|ref|ZP_02868029.1| hypothetical protein CLOSPI_01870 [Clostridium spiroforme DSM 1552]
 gi|169292153|gb|EDS74286.1| hypothetical protein CLOSPI_01870 [Clostridium spiroforme DSM 1552]
          Length = 456

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 193/347 (55%), Gaps = 12/347 (3%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ KPT IQ K IPLV + +D+ GI+QTGTGKT +F+LP++  ++  +  V+    +I  
Sbjct: 21  GFSKPTSIQEKVIPLVYKNNDIIGISQTGTGKTHAFLLPVMDQIDTNQDCVQ---AVITA 77

Query: 80  PTRELAAQVADN---FEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD- 135
           PTRELA Q+ +N   F KY  N  + V+LLIGG   +    KL     ++I TPGRI D 
Sbjct: 78  PTRELATQIYNNAKLFVKY--NEKIRVSLLIGGSDRQKSVNKLTVQPHIVIGTPGRIKDL 135

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
             +   L +      +IDEAD  L+ G++  I  +   +    + ++FSAT+   L+   
Sbjct: 136 ALDEQALKITTASTFIIDEADMTLEFGYLEDIDAVAGKMKEDLKMMVFSATIPQMLRPFL 195

Query: 196 ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
           + ++Q P  +E++    T + +EH  +AT  ++  +  +L++++   D     IIF N++
Sbjct: 196 KKYMQTPVIVEIDDDKVTTDNVEHVLIAT--KHQDRYDVLKKIMNIIDPYI-CIIFANKR 252

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
             V  +   L + GF V  +HGN++ R R +++        Q +VA+D+AARG+DI  V 
Sbjct: 253 DEVAKITKQLREDGFKVGEVHGNLEPRERKQMMRRIHNNEYQYIVATDIAARGIDIDGVS 312

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           HV N + P  ++ YIHR GR+GR    G  +++    D  ++  +EK
Sbjct: 313 HVINLEFPKESDFYIHRSGRSGRGKYTGVCYSMYDTSDEANLKVLEK 359


>gi|159466510|ref|XP_001691452.1| eukaryotic initiation factor 4A-like protein [Chlamydomonas
           reinhardtii]
 gi|158279424|gb|EDP05185.1| eukaryotic initiation factor 4A-like protein [Chlamydomonas
           reinhardtii]
          Length = 413

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 196/379 (51%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+ KP+ IQ K I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDQMNLHENLLRGIYAYGFEKPSAIQSKGIVPFTKGLDVIQQAQSGTGKTATFCAGILNN 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++      +    L+L PTRELA Q+       G    +     +GG       + L  G
Sbjct: 102 IDYNSNECQ---ALVLAPTRELAQQIEKVMRALGDFLQVKCHACVGGTSVREDARILGAG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  ++I++  +DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VQVVVGTPGRVFDMLRRRYLRADSIKMFTLDEADEMLSRGFKDQIYDIFQLLPPKLQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSAT+  E  +++  F+  P RI V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATLPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   + ++  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFANTRRKVDWLTDKMRERDHTVSATHGDMDQNTRDVIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V K+D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLQD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     ++ L  +++ L
Sbjct: 394 IQRFYNTVIEELPSNVADL 412


>gi|19113116|ref|NP_596324.1| ATP-dependent RNA helicase Ste13 [Schizosaccharomyces pombe 972h-]
 gi|1174456|sp|Q09181|DHH1_SCHPO RecName: Full=Putative ATP-dependent RNA helicase ste13
 gi|703066|dbj|BAA06178.1| RNA helicase [Schizosaccharomyces pombe]
 gi|4176526|emb|CAA22882.1| ATP-dependent RNA helicase Ste13 [Schizosaccharomyces pombe]
          Length = 485

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 188/360 (52%), Gaps = 7/360 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + +AG+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+FV+P L 
Sbjct: 45  EFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLE 104

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +++++   TLIL PTRELA Q +   +  GK+ N+ V +  GG        +L  
Sbjct: 105 KVDTKKSKIQ---TLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLND 161

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LD   +G    +     V+DEAD++L   F P I+ + S  P  RQ  
Sbjct: 162 TVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQIS 221

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    ++   +  L  P  I +    +     ++     +   S+K   L  L  S
Sbjct: 222 LYSATFPLIVKNFMDKHLNKPYEINLMDELTLRGVTQY---YAFVDESQKVHCLNTLF-S 277

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S    H  + Q  R ++  NF+ G  + +V 
Sbjct: 278 KLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVC 337

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A + ++  D  ++  IE
Sbjct: 338 SDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWADRFNLYRIE 397


>gi|296806541|ref|XP_002844080.1| ATP-dependent RNA helicase DBP4 [Arthroderma otae CBS 113480]
 gi|238845382|gb|EEQ35044.1| ATP-dependent RNA helicase DBP4 [Arthroderma otae CBS 113480]
          Length = 803

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/392 (32%), Positives = 207/392 (52%), Gaps = 26/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F DL LS      +  + +   T IQ + IP  LQ  D+ G A+TG+GKT +F++P+L  
Sbjct: 52  FTDLPLSEPTRLGLSASHFKTLTDIQARGIPHALQGRDILGAAKTGSGKTLAFLVPVLEN 111

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  K          LI+ PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L R
Sbjct: 112 LFRKQWTEYDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLQEEQERLGR 171

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++      +NI++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 172 -MNILVCTPGRMLQHMDQTAAFDTDNIQMLVLDEADRIMDMGFQSTVDAIVEHLPKERQT 230

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYSKKCALLQQL 238
           +LFSAT T ++  ++   L++P+ I V+  +S+A   T++  +V T      K   L   
Sbjct: 231 MLFSATQTKKVSDLARLSLRDPEYISVHEAASSATPSTLQQHYVVT--PLPDKLDTLWSF 288

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ---GFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++S  ++K+ II        V   +   +Q   G  +  +HG   Q +R+ I   F    
Sbjct: 289 IRS--SLKSKIIVFFSSSKEVRFVYEAFRQMQPGIPLLHLHGRQKQGARVDITHKFSTSK 346

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
              + A+D+ ARGLD P V  V   D P  ++ YIHR+GRT R  R G+A   +  +  +
Sbjct: 347 NSCLFATDVVARGLDFPAVDWVIQLDCPEDSDTYIHRVGRTARYERDGRAVLFL--DPSE 404

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
            I  + +L +KK+            P+EKI+I
Sbjct: 405 EIGMLSRLEQKKI------------PIEKINI 424


>gi|325119659|emb|CBZ55212.1| Eukaryotic initiation factor, related [Neospora caninum Liverpool]
          Length = 487

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 120/360 (33%), Positives = 190/360 (52%), Gaps = 7/360 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF +  L  +++  + + G+ KP+PIQ ++IP+ L   ++   A+ GTGKTA+F +P+L 
Sbjct: 115 DFEEYFLRRELLMGIFEKGFEKPSPIQEESIPIALAGKNILARAKNGTGKTAAFSIPLL- 173

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             EK +   R  + LIL PTRELA Q +   +  GK+ N+   +  GG        +L  
Sbjct: 174 --EKCQTSKRYIQGLILVPTRELALQTSAVVKAIGKHMNVQCMVSTGGTSLRDDIMRLYN 231

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL  TPGRILD  N+G   ++N  ++V+DEAD++L   F P ++ +   VP  RQ L
Sbjct: 232 PVHVLCGTPGRILDLANKGVADLSNCHMVVMDEADKLLSAEFQPIVEELIKFVPRERQIL 291

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           ++SAT    ++     +L +   I +    +     ++     + +  +K   L  L  S
Sbjct: 292 MYSATFPVTVKDFKNKYLPDAHEINLMDELTLKGLTQY---YAFVEERQKVHCLNTLF-S 347

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 348 KLQINQAIIFCNSVTRVELLAKKITELGYSCFYIHARMMQSHRNRVFHDFRNGACRCLVS 407

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  L+  +D  ++  IE
Sbjct: 408 SDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINLITYDDRFNLYRIE 467


>gi|330790576|ref|XP_003283372.1| hypothetical protein DICPUDRAFT_6001 [Dictyostelium purpureum]
 gi|325086637|gb|EGC40023.1| hypothetical protein DICPUDRAFT_6001 [Dictyostelium purpureum]
          Length = 462

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 120/376 (31%), Positives = 206/376 (54%), Gaps = 9/376 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +D +   +   ++  + + GY +P+PIQ++TIP++L+  DV  IA TG+GKTA+F +P+L
Sbjct: 51  LDDSKFKVRKYLIKNIQENGYKEPSPIQMQTIPILLKERDVVAIAPTGSGKTAAFSIPIL 110

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + L + +      R++I+ PTRELA Q+  NF    K     + +L   +  ++ ++ L 
Sbjct: 111 SALREPKKEGF--RSVIIAPTRELAQQIYRNFRLLSKGKPFRICVLSKNLHNQSTDESLI 168

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR-Q 179
           +  D+LI TP R++       L +NN+E LV DEAD++ D  F+  I ++ +     + +
Sbjct: 169 KNYDILITTPLRLVYLIKENVLKLNNVEYLVFDEADKLFDRDFVEQIDDVVTACQNQKLK 228

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   +++++ + ++NP +I +   ++ A T++   +    +  K  A+ +QL+
Sbjct: 229 ICLFSATMNTLVEELANSIMKNPIKITIGEENAAAVTVDQKLIYVGREEGKLMAV-RQLI 287

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q +      +IF   K+   +L   L   G +V  IH    Q  R  I+  F+ G I ++
Sbjct: 288 Q-KGLEPPILIFTQSKERAHDLFQELVFDGINVDVIHSERTQFQRDTIVKKFRTGKIWVL 346

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + ++L ARG+D   V +V NFD P    +Y+HRIGRTGRA R G A+TL    D   +  
Sbjct: 347 ICTELMARGMDFKGVNYVINFDFPQTLASYVHRIGRTGRANRPGVAYTLYTDADKPMLPT 406

Query: 360 IEKLIEKK----VDWL 371
           I   ++K      DW+
Sbjct: 407 IVHAMKKSGSEVPDWM 422


>gi|73994645|ref|XP_543405.2| PREDICTED: similar to DEAD-box protein 54 (ATP-dependent RNA
           helicase DP97) isoform 1 [Canis familiaris]
          Length = 884

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 193/367 (52%), Gaps = 18/367 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F++PM   
Sbjct: 98  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFER 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 158 LKTHSAQTGA-RALILSPTRELALQTMKFTKELGKFTGLRTALILGGDKMEDQFAALHEN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIE--------ILVIDEADRMLDMGFIPYIQNITSLV 174
            D++I TPGR++       L + ++E        +L      R+ +MGF   +Q I   +
Sbjct: 217 PDIIIATPGRLVHVAVEMNLKLQSVEYAAGMDGPLLTPPLFPRLFEMGFAEQLQEIIGRL 276

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P   QT+LFSAT+   L + +   L  P  I ++  +   E ++  F     +   K A+
Sbjct: 277 PGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFF--LVREDTKAAV 334

Query: 235 LQQLLQS----QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           L  LL++    QD     ++F   K +   L   L  QG S   I+  +DQ +R   L+ 
Sbjct: 335 LLHLLRTVVRPQDQT---VVFVATKHHAEYLSELLTTQGVSCTHIYSALDQTARKINLAK 391

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F       ++ +DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA
Sbjct: 392 FTHNKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVA 451

Query: 351 KEDIKHI 357
            +++ ++
Sbjct: 452 PDEVPYL 458


>gi|168011049|ref|XP_001758216.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690672|gb|EDQ77038.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 414

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 125/380 (32%), Positives = 200/380 (52%), Gaps = 12/380 (3%)

Query: 3   FADLGLSPKVVCAVLDAG-YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F  +GL   ++  +   G + KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 42  FDVMGLHENLLRGIYAYGSFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCSGILQ 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    ++   + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 102 QLD---YQLLECQALVLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTSVREDQRILQA 158

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  ++I+  V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 159 GVHVVVGTPGRVYDMLRRNALRADSIKCFVLDEADEMLSRGFKDQIYDIFQLLPQKLQVG 218

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQL 238
           +FSATM  E  +++  F+  P +I V     T E I+  +V    +  K    C L + L
Sbjct: 219 VFSATMPPEALEITRKFMNKPVKILVKRDELTLEGIKQFYVNVDREEWKLDTLCDLYETL 278

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++
Sbjct: 279 AITQ-----SVIFINTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRV 333

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + + 
Sbjct: 334 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLQ 393

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            I+K     ++ L  +++ L
Sbjct: 394 DIQKFYNTVIEELPSNVADL 413


>gi|169617257|ref|XP_001802043.1| hypothetical protein SNOG_11806 [Phaeosphaeria nodorum SN15]
 gi|160703370|gb|EAT80850.2| hypothetical protein SNOG_11806 [Phaeosphaeria nodorum SN15]
          Length = 1091

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 133/383 (34%), Positives = 208/383 (54%), Gaps = 20/383 (5%)

Query: 1    MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            + FA + ++P +V ++      +PT IQ   IP +L+  D  G ++TGTGKT +F +P  
Sbjct: 660  VSFASIDVAPWLVASLASMEIKRPTGIQKACIPEILKGRDCIGGSRTGTGKTVAFSVP-- 717

Query: 61   TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             IL+K          LI+ PTRELA Q+ +  +      ++   L+ GG     Q   L 
Sbjct: 718  -ILQKWAEDPSGIFGLIITPTRELAIQIYEQVKAISAPQSMKPILVTGGSDQREQAIALA 776

Query: 121  RGADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSL 173
                V+I TPGR+ +H           +  +  +V DEADR+L  G    IP I+   S+
Sbjct: 777  SRPHVVIATPGRLAEHIKTSGEDTICGLRRVRFVVFDEADRLLAPGRGSMIPDIETCLSV 836

Query: 174  VP--FTRQTLLFSATMTDELQKVSENFLQNPKRI-----EVNTPS-STAETIEHCFVATY 225
            +P    RQTLLF+AT+T E+  +     + P R+     EV+T + +T  ++   ++ T 
Sbjct: 837  LPPKEQRQTLLFTATVTPEVLALKSQ-PRAPGRLPIFVCEVDTETLATPASLSQLYLQTP 895

Query: 226  AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
              + K+C L   LL   +  K+ IIFCN+ K    L + L      V A+H  + Q+ R+
Sbjct: 896  VTH-KECYLHVLLLTPLNLTKSVIIFCNRTKTATLLEYMLRMLDHRVTALHSGLKQQDRI 954

Query: 286  KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
              L+ F+    +++VA+D+AARGLDIP+VG V NFDVP   ++YIHR+GRT RAGR G +
Sbjct: 955  SNLARFRAQAARILVATDVAARGLDIPEVGLVVNFDVPRDPDDYIHRVGRTARAGRPGNS 1014

Query: 346  FTLVAKEDIKHIDAIEKLIEKKV 368
             T + + D++ + AIE+ +  K+
Sbjct: 1015 VTFIGQRDVELVLAIEERVGGKM 1037


>gi|289769727|ref|ZP_06529105.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
 gi|289699926|gb|EFD67355.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
          Length = 495

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 180/347 (51%), Gaps = 5/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +  +++ A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 69  FADLDMPAEMLAALESQGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 128

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA    P  L+L PTRELA QV D    Y ++  L +  ++GG+    Q   L  G
Sbjct: 129 TAGRRAEPGQPLGLVLVPTRELAQQVTDALRPYARSVKLRLTAVVGGMSIGRQASALRGG 188

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +V++ TPGR+ D  +RG   +N + + V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 189 VEVVVATPGRLKDLIDRGDCRLNQVSVTVLDEADQMADMGFMPQVTALLDQVRPDGQRML 248

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  +    T+EH  +  +   + K A   ++    
Sbjct: 249 FSATLDRNVDLLVRRYLSDPVVHSVDPSAGAVTTMEHHVLRVHG--ADKHAATTEIAARD 306

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   ++F   +  V  L   L   G    A+HG   Q  R + L+ FK G + ++VA+
Sbjct: 307 GRV---LMFLGTRHAVDRLTRDLLNSGVRAAALHGGKSQSQRTRTLAQFKNGHVTVLVAT 363

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ++AARG+ +  +  V N D P+  ++Y+HR GRT RAG  G   T V
Sbjct: 364 NVAARGIHVDSLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTPV 410


>gi|255081756|ref|XP_002508100.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
 gi|226523376|gb|ACO69358.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
          Length = 464

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 195/361 (54%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P   
Sbjct: 91  EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFTIP--- 147

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEK      + + ++L PTRELA Q +   ++ GK+ N+ V +  GG   +    +L +
Sbjct: 148 VLEKTDTSKNVIQAVLLVPTRELALQTSQVCKELGKHLNVQVMVTTGGTSLKDDIMRLHQ 207

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++D  ++G   +N   +L +DEAD++L   F P I  +   +P  RQ L
Sbjct: 208 PVHIVVATPGRLVDLASKGVAKLNQCTMLAMDEADKLLSPEFQPVIAQLIDFLPRNRQIL 267

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    ++   E +L+ P  I +     T + I   +   + +  +K   L  L  S
Sbjct: 268 LYSATFPVTVKSFKEKYLRKPFVINL-MEELTLKGITQYY--AFVEEKQKVHCLNTLF-S 323

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 324 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMMQSHRNRVFHDFRNGACRNLVS 383

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G +  L+  +D  ++  IE
Sbjct: 384 SDLFTRGIDIQSVNVVINFDFPKNSETYLHRVGRSGRFGHLGISVNLITYDDRFNLFRIE 443

Query: 362 K 362
           K
Sbjct: 444 K 444


>gi|116333834|ref|YP_795361.1| superfamily II DNA/RNA helicase [Lactobacillus brevis ATCC 367]
 gi|116099181|gb|ABJ64330.1| Superfamily II DNA and RNA helicase [Lactobacillus brevis ATCC 367]
          Length = 452

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/368 (33%), Positives = 192/368 (52%), Gaps = 16/368 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF +  L P ++ A+   G+ +PT +Q K IP++   HDV G +QTG+GKT +F+LP+  
Sbjct: 4   DFKNFNLQPYLMTALQKIGFQQPTAVQEKLIPVISAGHDVVGQSQTGSGKTHTFLLPIFN 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
            L          + +I  P+RELA Q+    E+      + + +   +GG   + Q +KL
Sbjct: 64  QLTSEN----QVQAVITTPSRELAYQIRTAAEQLAAEAPFEIRIGNYVGGTDKQRQIEKL 119

Query: 120 ER-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 ++I TPGR+ D      L ++     V+DEAD  LD+GF+  +  I   +P   
Sbjct: 120 RHYQPQLVIGTPGRVQDLIQSQALDVHTTRQFVVDEADMTLDLGFLDQVDKIAGRMPKNL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT+   L      ++ +P   E+ T +  + TI++  ++T  Q   K  L+ QL
Sbjct: 180 QMMVFSATIPQRLDPFLRKYMNHPVVEEIPTATVISSTIDNWLISTKGQ--NKNQLIYQL 237

Query: 239 LQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +    TM      +IF N K  V  +   L+ QG  V  IHG I  R R +++   K   
Sbjct: 238 I----TMGEPYLVLIFANTKTRVEQIHDFLQSQGLKVAMIHGGIKPRERKRVMREVKNLQ 293

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            Q +VA+DLAARG+DI  V HV N D+P   + ++HR+GRTGR G  G A TL + ++  
Sbjct: 294 FQFVVATDLAARGIDIEGVSHVINDDIPEDLDFFVHRVGRTGRQGMPGTAITLYSPDEEA 353

Query: 356 HIDAIEKL 363
            I  IE +
Sbjct: 354 KIAEIEAM 361


>gi|221504486|gb|EEE30159.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 1544

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 133/382 (34%), Positives = 201/382 (52%), Gaps = 7/382 (1%)

Query: 3    FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
            F   GL  K+V  +   G  +P PIQ++ IP ++   DV  +A+TG+GKT ++ LP++  
Sbjct: 975  FFQCGLPDKIVKYLTLRGITEPFPIQMQAIPCLMCGRDVIAVAETGSGKTLAYGLPLIRH 1034

Query: 62   ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L   +   R     L++ PTREL  Q+     +  K  +L      GG    +Q   ++
Sbjct: 1035 VLSVKQQDFRDGAIALVIAPTRELCNQIFKEINRCCKLVDLNAVACYGGAGIGSQLGAIK 1094

Query: 121  RGADVLICTPGRILD--HFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            RG +V++ TPGR++D    N G+L  +  +  +V+DEADRM D GF P + +I +     
Sbjct: 1095 RGVEVIVGTPGRLIDILTMNGGRLTSLKRVTFIVLDEADRMFDFGFEPQVTSIIASSRPD 1154

Query: 178  RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            RQT LFSAT    ++ ++   LQ P  I V     TA  ++  +V    +  K   LLQ 
Sbjct: 1155 RQTCLFSATFPPHIEALARRILQKPVEIIVGEKGRTAANVQQ-YVEVMEEERKFFRLLQL 1213

Query: 238  LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L + Q+   + IIF N++     L   L K G+    +HG  DQ  R   +  F++G   
Sbjct: 1214 LGEWQE-HGSVIIFVNRQVEADELFTELLKYGYQAATLHGGQDQTDREFTIQEFQDGVRT 1272

Query: 298  LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            L++A+ +AARGLD      V N   PN  E+Y+HRIGRTGRAGR G A+T + KED    
Sbjct: 1273 LLIATSVAARGLDCKHCVLVINMTCPNHIEDYVHRIGRTGRAGRIGVAYTFLTKEDADKA 1332

Query: 358  DAIEKLIEKKVDWLNGDLSSLN 379
            D +EK + +    +   LS L+
Sbjct: 1333 DDLEKALTQSGQAVPQALSDLS 1354


>gi|221482438|gb|EEE20786.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
          Length = 1544

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 133/382 (34%), Positives = 201/382 (52%), Gaps = 7/382 (1%)

Query: 3    FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
            F   GL  K+V  +   G  +P PIQ++ IP ++   DV  +A+TG+GKT ++ LP++  
Sbjct: 975  FFQCGLPDKIVKYLTLRGITEPFPIQMQAIPCLMCGRDVIAVAETGSGKTLAYGLPLIRH 1034

Query: 62   ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L   +   R     L++ PTREL  Q+     +  K  +L      GG    +Q   ++
Sbjct: 1035 VLSVKQQDFRDGAIALVIAPTRELCNQIFKEINRCCKLVDLNAVACYGGAGIGSQLGAIK 1094

Query: 121  RGADVLICTPGRILD--HFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            RG +V++ TPGR++D    N G+L  +  +  +V+DEADRM D GF P + +I +     
Sbjct: 1095 RGVEVIVGTPGRLIDILTMNGGRLTSLKRVTFIVLDEADRMFDFGFEPQVTSIIASSRPD 1154

Query: 178  RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            RQT LFSAT    ++ ++   LQ P  I V     TA  ++  +V    +  K   LLQ 
Sbjct: 1155 RQTCLFSATFPPHIEALARRILQKPVEIIVGEKGRTAANVQQ-YVEVMEEERKFFRLLQL 1213

Query: 238  LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L + Q+   + IIF N++     L   L K G+    +HG  DQ  R   +  F++G   
Sbjct: 1214 LGEWQE-HGSVIIFVNRQVEADELFTELLKYGYQAATLHGGQDQTDREFTIQEFQDGVRT 1272

Query: 298  LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            L++A+ +AARGLD      V N   PN  E+Y+HRIGRTGRAGR G A+T + KED    
Sbjct: 1273 LLIATSVAARGLDCKHCVLVINMTCPNHIEDYVHRIGRTGRAGRIGVAYTFLTKEDADKA 1332

Query: 358  DAIEKLIEKKVDWLNGDLSSLN 379
            D +EK + +    +   LS L+
Sbjct: 1333 DDLEKALTQSGQAVPQALSDLS 1354


>gi|237841393|ref|XP_002369994.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211967658|gb|EEB02854.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
          Length = 1544

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 133/382 (34%), Positives = 201/382 (52%), Gaps = 7/382 (1%)

Query: 3    FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
            F   GL  K+V  +   G  +P PIQ++ IP ++   DV  +A+TG+GKT ++ LP++  
Sbjct: 975  FFQCGLPDKIVKYLTLRGITEPFPIQMQAIPCLMCGRDVIAVAETGSGKTLAYGLPLIRH 1034

Query: 62   ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L   +   R     L++ PTREL  Q+     +  K  +L      GG    +Q   ++
Sbjct: 1035 VLSVKQQDFRDGAIALVIAPTRELCNQIFKEINRCCKLVDLNAVACYGGAGIGSQLGAIK 1094

Query: 121  RGADVLICTPGRILD--HFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            RG +V++ TPGR++D    N G+L  +  +  +V+DEADRM D GF P + +I +     
Sbjct: 1095 RGVEVIVGTPGRLIDILTMNGGRLTSLKRVTFIVLDEADRMFDFGFEPQVTSIIASSRPD 1154

Query: 178  RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            RQT LFSAT    ++ ++   LQ P  I V     TA  ++  +V    +  K   LLQ 
Sbjct: 1155 RQTCLFSATFPPHIEALARRILQKPVEIIVGEKGRTAANVQQ-YVEVMEEERKFFRLLQL 1213

Query: 238  LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L + Q+   + IIF N++     L   L K G+    +HG  DQ  R   +  F++G   
Sbjct: 1214 LGEWQE-HGSVIIFVNRQVEADELFTELLKYGYQAATLHGGQDQTDREFTIQEFQDGVRT 1272

Query: 298  LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            L++A+ +AARGLD      V N   PN  E+Y+HRIGRTGRAGR G A+T + KED    
Sbjct: 1273 LLIATSVAARGLDCKHCVLVINMTCPNHIEDYVHRIGRTGRAGRIGVAYTFLTKEDADKA 1332

Query: 358  DAIEKLIEKKVDWLNGDLSSLN 379
            D +EK + +    +   LS L+
Sbjct: 1333 DDLEKALTQSGQAVPQALSDLS 1354


>gi|315222026|ref|ZP_07863937.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
 gi|315188992|gb|EFU22696.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
          Length = 447

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 191/371 (51%), Gaps = 19/371 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ T +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALKDLNFVEATEVQEKLIPVVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG--KNYNLTVALLIGGIPFEAQNKK 118
             L +    V++   +I  P+RELA Q+     +     +  + VA  +GG     Q  K
Sbjct: 61  QKLNEDADSVQV---VITAPSRELARQIYQAARQIAAFSDKEIRVAHYVGGTDKNRQIGK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L+++     V+DEAD  LDMGF+  +  I S +P  
Sbjct: 118 LSSSQPHIVIGTPGRIYDLVESGDLVIHKAHTFVVDEADMTLDMGFLMTVDKIASSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-----AQYSKKC 232
            Q L+FSAT+  +LQ   + +L NP   ++   +  ++TIE+  ++T      AQ  K  
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVIEQIKIKTVISDTIENWLISTKGRDKNAQIYKIT 237

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LLQ  L         +IF N K     L   L  QG  V  IHG+I  R R +I++  K
Sbjct: 238 QLLQPYL--------AMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVK 289

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
               + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    
Sbjct: 290 NLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPS 349

Query: 353 DIKHIDAIEKL 363
           D   I  +EKL
Sbjct: 350 DDSDIRELEKL 360


>gi|313884071|ref|ZP_07817837.1| DEAD-box ATP-dependent RNA helicase CshB [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620518|gb|EFR31941.1| DEAD-box ATP-dependent RNA helicase CshB [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 451

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/367 (33%), Positives = 197/367 (53%), Gaps = 10/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   +  A+ +A +   TP+Q + IP  L+  D+   +QTG+GKT +F+LP  
Sbjct: 1   MLFKDLHLKEYIQIALNEANFTTMTPVQTEVIPQALKGEDLIVQSQTGSGKTHAFLLP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL--LIGGIPFEAQNKK 118
            IL+     V+  + +I  P+RELA Q+        +  +  + L   IGG   + Q  +
Sbjct: 59  -ILQNINEDVQEVQAVITAPSRELATQLYQVASSLIQAADKPIRLENYIGGTDKQRQLDQ 117

Query: 119 L--ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           L  ++   ++I TPGRI D  +   L +   +ILV+DEAD  LD+GF+  +  I S +P 
Sbjct: 118 LGPDKQPQLVIGTPGRIFDLMSDNALWVQTAKILVVDEADMTLDLGFLKIVDEIASRMPQ 177

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q + FSAT+  EL+     ++  PK + +      +ETIE+  + T  + S++    Q
Sbjct: 178 DLQMMAFSATVPQELRVFLNKYMVAPKVVTIKPKQVISETIENYLINTKGK-SREELTYQ 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L   Q  +   ++FCN K     +   L+++G  V  IHG+I  R R +++   +    
Sbjct: 237 LLTMGQPYL--ALVFCNTKAYADQMSLFLKEKGLKVATIHGDISSRERKRVMKQIQNLDF 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VA+DLAARG+DIP    V N ++P   E ++HR+GRTGR G  G+AFT V  +D + 
Sbjct: 295 QYVVATDLAARGIDIPGTSLVINTELPMELEYFVHRVGRTGRNGLEGRAFTFVTPDDDQA 354

Query: 357 IDAIEKL 363
           +  +E +
Sbjct: 355 VSDLEAM 361


>gi|314936321|ref|ZP_07843668.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           hominis subsp. hominis C80]
 gi|313654940|gb|EFS18685.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           hominis subsp. hominis C80]
          Length = 448

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 128/387 (33%), Positives = 204/387 (52%), Gaps = 25/387 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L+  ++ AV D  + KPT IQ + IP + +  ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEIFNLNTNLIDAVKDLNFNKPTEIQNRIIPRIKKGTNLIGQSQTGTGKSHAFLLPLIDL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQ---VADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +      ++ P+++++ PTRELA Q   VA +   +  +  + V+L IGG   E   ++ 
Sbjct: 66  IN---TDIKEPQSIVVAPTRELAQQLYKVASHLASFQSD--IKVSLFIGGTDIEKDKQRT 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   ++I TP RI D    G L ++    L+IDEAD ++D+G I  +  I + +     
Sbjct: 121 NQQPQLVIGTPTRINDLAQSGHLHIHKASYLIIDEADLLIDLGLIEDVDYIAARLDENAN 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +FSAT+   L+     +L +P+ + V+  S   + IE   + T     K    + + L
Sbjct: 181 IAVFSATIPKSLEPFLNKYLSHPEYVVVDNKSQNKKNIEFYLIPT-----KGTEKVDKTL 235

Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           Q  D +     IIFCN ++N   L  SL + G  V  IHG +  R R + +   +    Q
Sbjct: 236 QLIDILNPYLCIIFCNSRENANELAQSLNESGIKVGMIHGGLTPRERKQQMKRIRNLDFQ 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++ASDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I
Sbjct: 296 YVIASDLASRGIDIEGVSHVVNFDVPNDIDFFTHRVGRTGRGNYKGVALTLYSPDEEHNI 355

Query: 358 DAIEKLIEKK------VDWLNGDLSSL 378
                LIE K      VD  NG+L  +
Sbjct: 356 S----LIEDKGYHFDNVDIKNGELKPI 378


>gi|294933513|ref|XP_002780743.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
 gi|239890799|gb|EER12538.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
          Length = 634

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 189/368 (51%), Gaps = 24/368 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F D+     V+ A+   G  +PT IQ++ +P  L   D+ GIA TG+GKT  F +P +L 
Sbjct: 190 FKDMLFPQGVLEALKSKGISRPTQIQMQGLPEALLGRDLIGIAFTGSGKTLVFAIPAILR 249

Query: 62  ILE-KGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYN-------------LTVA 104
            +E + RA V     P  L++ P+RELA Q  +  E Y                  L   
Sbjct: 250 AMEMEMRAPVADSEGPFCLLIAPSRELAQQTHEVVEYYASYLTGRPSSRSRHRLPRLRCQ 309

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
           L IGG     Q   + RG  ++  TPGR+    N     +     + +DEADRM+D+GF 
Sbjct: 310 LCIGGESLGRQAANVRRGVHIVTATPGRLNHMLNEKMFTLAQCVYICLDEADRMVDLGFE 369

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
             ++N        RQTLLFSATM  ++Q+ + + L NP  + +N   + A  ++   V  
Sbjct: 370 DEVRNTLDHFGHQRQTLLFSATMPRKIQEFATSALVNP--VTINVGRAGAANLD---VVQ 424

Query: 225 YAQYSKKCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
             +Y K  + L  LLQ  Q T    ++FC+ K +   +   L  +G   CAIHG ++Q  
Sbjct: 425 EVEYVKAESKLTYLLQCLQKTAPPVMVFCSDKASCDEVLEYLLLKGVGACAIHGGLEQSE 484

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R K    FK G   +++ +D+A++GLD P + HV N+D+P   ENY+HRIGRTGR GR G
Sbjct: 485 RHKSTRLFKSGAKDVLIGTDVASKGLDFPAIQHVINYDMPKEIENYVHRIGRTGRCGRTG 544

Query: 344 KAFTLVAK 351
            A T + K
Sbjct: 545 VATTFINK 552


>gi|154270258|ref|XP_001535985.1| hypothetical protein HCAG_09069 [Ajellomyces capsulatus NAm1]
 gi|150410056|gb|EDN05444.1| hypothetical protein HCAG_09069 [Ajellomyces capsulatus NAm1]
          Length = 457

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/348 (34%), Positives = 184/348 (52%), Gaps = 7/348 (2%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
            + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L   E+   +    +
Sbjct: 3   GIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL---ERTNPKNSKTQ 59

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            LIL PTRELA Q +   +  GK+  + V +  GG   +    +L     +++ TPGRIL
Sbjct: 60  ALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLNEAVHIIVGTPGRIL 119

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ +LFSAT    ++  
Sbjct: 120 DLASKGVADLSECSTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQVMLFSATFPMIVKSF 179

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
            +  ++NP  I +     T   I   +   + +  +K   L  L  S+  +   IIFCN 
Sbjct: 180 KDKHMRNPYEINL-MDELTLRGITQYYA--FVEEKQKVHCLNTLF-SKLQINQSIIFCNS 235

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
              V  L   + + G+S    H  + Q +R ++  +F+ G  + +V SDL  RG+DI  V
Sbjct: 236 TNRVELLAKKITELGYSCFYSHAKMLQHNRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAV 295

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
             V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  IE+
Sbjct: 296 NVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRYNLYKIEQ 343


>gi|163842399|ref|YP_001626803.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella suis ATCC 23445]
 gi|163673122|gb|ABY37233.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella suis ATCC 23445]
          Length = 626

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 191/347 (55%), Gaps = 10/347 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEK- 65
           ++P +  A+   GY   T +Q   +       D+   AQTG+GKT +F L M  TILE  
Sbjct: 7   IAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMANTILEDE 66

Query: 66  ---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
              G A    P  +I+ PTRELA QV    E    +    +A  +GG+    + + LERG
Sbjct: 67  LRFGDAGA--PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALERG 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGR+ DH  R  L M+ +  +V+DEAD MLDMGF   ++ I    P  R+TL+
Sbjct: 125 SHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDRRTLM 184

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++++ F  N  RI V + +S    I++  +     + +  A++  LL   
Sbjct: 185 FSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPV-PPHERDHAIINTLLYYD 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +N IIFC+ ++ V ++   L  +GF+V A+ G + Q  R   L   ++G  ++ VA+
Sbjct: 244 S--QNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVAT 301

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+P++  V + D+P  ++  +HR GRTGRAGR G    +V
Sbjct: 302 DVAARGIDLPNLDLVIHADLPTNSDTLLHRSGRTGRAGRKGTCVLVV 348


>gi|168037666|ref|XP_001771324.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677413|gb|EDQ63884.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 413

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/379 (32%), Positives = 198/379 (52%), Gaps = 11/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L  
Sbjct: 42  FDVMDLHENLLRGIYAYGFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCSGILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    ++   + L+L PTRELA Q+       G    + V   +GG       + L+ G
Sbjct: 102 LD---YQLLECQALVLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTSVREDQRILQAG 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + I+  V+DEAD ML  GF   I +I  L+P   Q  +
Sbjct: 159 VHVVVGTPGRVYDMLRRNALRADAIKCFVLDEADEMLSRGFKDQIYDIFQLLPQKLQVGV 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLL 239
           FSATM  E  +++  F+  P +I V     T E I+  +V    +  K    C L + L 
Sbjct: 219 FSATMPPEALEITRKFMNKPVKILVKRDELTLEGIKQFYVNVDREEWKLDTLCDLYETLA 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q      +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ +++
Sbjct: 279 ITQ-----SVIFINTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLQD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I++     ++ L  +++ L
Sbjct: 394 IQRFYNTVIEELPSNVADL 412


>gi|168026784|ref|XP_001765911.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682817|gb|EDQ69232.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 406

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 115/361 (31%), Positives = 195/361 (54%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P + 
Sbjct: 33  EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPAIE 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++ +  V++   L+L PTRELA Q +   ++  K+ N+ + +  GG        +L +
Sbjct: 93  KIDQNKNAVQV---LLLVPTRELALQTSQVCKELAKHLNIQIMVTTGGTSLRDDIMRLYQ 149

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD  N+G   +    +LV+DEAD++L   F P ++ +   +P  RQ L
Sbjct: 150 PVHLLVGTPGRVLDLANKGVCNLKECTMLVMDEADKLLSPEFQPLVEQLIGFLPENRQIL 209

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    ++   + FL+ P  I +    +     ++     + +  +K   L  L  S
Sbjct: 210 LYSATFPVTVKSFKDRFLRKPYVINLMDELTLKGITQY---YAFVEERQKVHCLNTLF-S 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 266 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQSHRNRVFHDFRNGACRNLVS 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 326 SDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 385

Query: 362 K 362
           +
Sbjct: 386 Q 386


>gi|326488617|dbj|BAJ97920.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 510

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 196/368 (53%), Gaps = 25/368 (6%)

Query: 9   SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
           SP   C+   A    P P + +  P+VL   D+ GIA TG+GKT  FVLP++ +  +   
Sbjct: 74  SPSSGCSARRAS-CSPRPSRCRGFPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVALQEEM 132

Query: 69  RVRM-----PRTLILEPTRELAAQVADNFE------KYGKNYNLTVALLIGGIPFEAQNK 117
            + +     P  +I+ P+RELA Q  D  +      K      +   L IGGI    Q  
Sbjct: 133 LMPIVPGEGPFGMIICPSRELAKQTYDVIDMFLTPLKQAGFPEIRPLLCIGGIDMRTQLD 192

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +++G  +++ TPGR+ D   + K+ ++N   L +DEADR++D+GF   I+ +       
Sbjct: 193 VVKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ 252

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM  ++Q  +++ L  P  + VN   + A  ++   V    +Y K+ A +  
Sbjct: 253 RQTLLFSATMPKKIQNFAKSALVKP--VIVNVGRAGAANLD---VIQEVEYVKEDARIIY 307

Query: 238 LLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           LL+  Q T    +IFC  K +V  +   L  +G    AIHG  DQ  R   +  FK G  
Sbjct: 308 LLECLQKTPPPVLIFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERQNAIEFFKNGKK 367

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE---- 352
            ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + K     
Sbjct: 368 DVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTET 427

Query: 353 ---DIKHI 357
              D+KH+
Sbjct: 428 TLLDLKHL 435


>gi|332751903|gb|EGJ82298.1| ATP-dependent RNA helicase rhlB [Shigella flexneri 2747-71]
          Length = 361

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 175/303 (57%), Gaps = 7/303 (2%)

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
           +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K LE G D+LI 
Sbjct: 21  KVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIG 80

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL--LFSAT 186
           T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   Q L  LFSAT
Sbjct: 81  TTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSAT 140

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQSQDTM 245
           ++  +++++   + N + IEV     T   I E  F   Y    +K  LLQ L++ ++  
Sbjct: 141 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLLQTLIE-EEWP 196

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + ++VA+D+A
Sbjct: 197 DRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVA 256

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++ AIE  I 
Sbjct: 257 ARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIG 316

Query: 366 KKV 368
             +
Sbjct: 317 HSI 319


>gi|323167634|gb|EFZ53339.1| ATP-dependent RNA helicase rhlB [Shigella sonnei 53G]
 gi|323938919|gb|EGB35138.1| DEAD/DEAH box helicase [Escherichia coli E482]
 gi|332089067|gb|EGI94178.1| ATP-dependent RNA helicase rhlB [Shigella boydii 3594-74]
 gi|332750995|gb|EGJ81400.1| ATP-dependent RNA helicase rhlB [Shigella flexneri 4343-70]
 gi|332997905|gb|EGK17512.1| ATP-dependent RNA helicase rhlB [Shigella flexneri K-218]
          Length = 361

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 175/303 (57%), Gaps = 7/303 (2%)

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
           +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K LE G D+LI 
Sbjct: 21  KVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIG 80

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL--LFSAT 186
           T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   Q L  LFSAT
Sbjct: 81  TTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSAT 140

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQSQDTM 245
           ++  +++++   + N + IEV     T   I E  F   Y    +K  LLQ L++ ++  
Sbjct: 141 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLLQTLIE-EEWP 196

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + ++VA+D+A
Sbjct: 197 DRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVA 256

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++ AIE  I 
Sbjct: 257 ARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIG 316

Query: 366 KKV 368
             +
Sbjct: 317 HSI 319


>gi|333013817|gb|EGK33180.1| ATP-dependent RNA helicase rhlB [Shigella flexneri K-227]
          Length = 361

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 175/303 (57%), Gaps = 7/303 (2%)

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
           +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K LE G D+LI 
Sbjct: 21  KVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIG 80

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL--LFSAT 186
           T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   Q L  LFSAT
Sbjct: 81  TTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSAT 140

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQSQDTM 245
           ++  +++++   + N + IEV     T   I E  F   Y    +K  LLQ L++ ++  
Sbjct: 141 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLLQTLIE-EEWP 196

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + ++VA+D+A
Sbjct: 197 DRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVA 256

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++ AIE  I 
Sbjct: 257 ARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIG 316

Query: 366 KKV 368
             +
Sbjct: 317 HSI 319


>gi|83944259|ref|ZP_00956714.1| dead-box protein, ATP-independent rna helicase [Sulfitobacter sp.
           EE-36]
 gi|83844803|gb|EAP82685.1| dead-box protein, ATP-independent rna helicase [Sulfitobacter sp.
           EE-36]
          Length = 731

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/403 (31%), Positives = 213/403 (52%), Gaps = 18/403 (4%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF---VLPMLTILEKGRA 68
           +  A+   GY   TP+Q       L   D+   AQTG+GKT +F   + P L   ++   
Sbjct: 5   IADALATQGYDSLTPVQEAVTNPDLVEADLLVSAQTGSGKTVAFGLAIAPTLLGDDEKFG 64

Query: 69  RVRMPRTLILEPTRELAAQVADNFEK-YGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
               P  LI+ PTRELA QV+      YGK     V   +GG+    + + L+RGA +++
Sbjct: 65  HAGAPLALIIAPTRELAMQVSRELTWLYGK-AGAVVTTCVGGMDTRTERRALDRGAHIVV 123

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+ DH  R  + +++I  +V+DEAD MLD+GF   ++ I S  P  R+TLLFSAT+
Sbjct: 124 ATPGRLCDHIKRNNINLSDIRAVVLDEADEMLDLGFREELEFILSEAPEERRTLLFSATV 183

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
              + K+++++ ++ +R+E          IE+  +  + + ++  A++  L   +   KN
Sbjct: 184 PAAIAKLAKSYQRDAQRVETVGEKKQHADIEYRALNVHPRDTEN-AIINVLRFYE--AKN 240

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            I+FCN +  V  L      +GFSV A+ G + Q  R   L   ++G  ++ +A+D+AAR
Sbjct: 241 AIVFCNTRAAVARLTTRFTNRGFSVVALSGELTQSERTNALQALRDGRARVCIATDVAAR 300

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           G+D+P++  V + D+P+ ++  +HR GRTGRAGR G +  +V  +     + +    + K
Sbjct: 301 GIDLPNLELVVHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPAKMRSKANRLLGGAKLK 360

Query: 368 VDWLNGDLSSLNPPLEKIDIAQHNH----ARKNNPIPQKSTGF 406
           V+W N       P  E+++          +  ++PIP  + GF
Sbjct: 361 VEWAN------PPSAEEVNAEDEKRLLADSAWSDPIPDDAAGF 397


>gi|199598083|ref|ZP_03211506.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|258507759|ref|YP_003170510.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
 gi|199591009|gb|EDY99092.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|257147686|emb|CAR86659.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
 gi|259649106|dbj|BAI41268.1| ATP-dependent DNA and RNA helicase [Lactobacillus rhamnosus GG]
          Length = 448

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/351 (35%), Positives = 194/351 (55%), Gaps = 14/351 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L P V+  +   G  +PTPIQ K IP +L+  ++ G +QTG+GKT +F++P+L++
Sbjct: 5   FKQYQLKPFVIAGLDAMGITQPTPIQKKVIPALLRGENLVGQSQTGSGKTHAFLVPLLSL 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE- 120
           ++      ++   +I  P+RELA Q+    ++  +    + ++ L+GG+  + Q  KL+ 
Sbjct: 65  VDPNEDATQV---VITAPSRELANQIYAVAQQLTQTEPAIRISRLVGGMDKQKQIDKLQA 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V I TPGRILD   R  L+  ++   V+DEAD  LDMGF+  +  I S  P   Q 
Sbjct: 122 HQPHVAIGTPGRILDMIKRYDLVPASVRHFVVDEADMTLDMGFLETVDAIASSFPEHLQM 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT+  +L+     ++ +P  IE+   S  A+T+E+  +A   +   K  L+ QL+ 
Sbjct: 182 AVFSATIPQKLEPFLRKYMDHPTVIELKPQSVIADTVENILIAVKGR--DKNELIYQLV- 238

Query: 241 SQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              TM +    +IF N K +V  +   L+ QG  V  IHG I  R R +I+    +   Q
Sbjct: 239 ---TMGHPFLVLIFANTKTSVDAIHDYLKHQGLKVAKIHGGIQPRERRRIMKEVADLKYQ 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +VA+DLAARG+DI  V  V N ++P   E +IHR+GRTGR G  G A TL
Sbjct: 296 YVVATDLAARGIDIKGVSMVINAEIPRDQEFFIHRVGRTGRNGLPGTAITL 346


>gi|68474158|ref|XP_718788.1| hypothetical protein CaO19.6197 [Candida albicans SC5314]
 gi|68474329|ref|XP_718704.1| hypothetical protein CaO19.13577 [Candida albicans SC5314]
 gi|74656470|sp|Q5AAW3|DHH1_CANAL RecName: Full=ATP-dependent RNA helicase DHH1
 gi|46440487|gb|EAK99792.1| hypothetical protein CaO19.13577 [Candida albicans SC5314]
 gi|46440576|gb|EAK99880.1| hypothetical protein CaO19.6197 [Candida albicans SC5314]
          Length = 549

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 186/360 (51%), Gaps = 7/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTASF++P L +
Sbjct: 32  FEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQL 91

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    +V+    LIL PTRELA Q +      GK+      +  GG        +L   
Sbjct: 92  VKPKLNKVQ---ALILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIVRLHDP 148

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +L+ TPGR+LD   R  + ++   + V+DEAD+ML   F   I+ I    P  RQ LL
Sbjct: 149 VHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKMLSREFKGIIEQILEFFPPNRQALL 208

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    ++   +  L  P  I +     T + I   +   + +  +K   L  L  S+
Sbjct: 209 FSATFPLAVKSFMDKHLTKPYEINL-MDELTLKGISQFYA--FVEEKQKLHCLNTLF-SK 264

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   IIFCN    V  L   + + G+S    H  + Q++R K+   F++G ++ +V S
Sbjct: 265 LQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCS 324

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L++  D   +  IE+
Sbjct: 325 DLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYSLYKIEQ 384


>gi|198285649|gb|ACH85363.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Salmo salar]
          Length = 611

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/375 (34%), Positives = 204/375 (54%), Gaps = 23/375 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +SP  +  +   G      IQ +T   V +  DV G A+TGTGKT +F +P++  
Sbjct: 35  FSNFRISPNTIKLLQARGISYLFDIQTQTFNSVYEGKDVIGQARTGTGKTLAFAIPLIEK 94

Query: 63  LEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+     + R R P+ L L PTRELA QV+ +F+   K   L+V    GG  +  Q   +
Sbjct: 95  LQNDPDDKRRGRAPKILCLAPTRELAIQVSKDFKDMTKK--LSVTCFYGGSSYNPQLDAI 152

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH    KL ++ ++ +V+DE D+MLDMGF   ++ I S   + + 
Sbjct: 153 RSGIDILVGTPGRIKDHLQNNKLDLSQLKHVVLDEVDQMLDMGFAEQVEEILS-ASYQKD 211

Query: 179 -----QTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTAETIEHCFVATYAQYS 229
                QTLLFSAT    +  V++ +++ P    V+         A T+EH  +A +  +S
Sbjct: 212 SETNPQTLLFSATCPSWVYDVAKRYMR-PTYEHVDLIGKKTQKAATTVEHLAIACH--WS 268

Query: 230 KKCALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLE-KQGFSVCAIHGNIDQRSRMKI 287
           ++ A++  ++Q    +    I+FC  KK+   L  +   KQ  S  ++HG+I Q+ R   
Sbjct: 269 QRAAVIGDVVQVYSGSHGRTIVFCETKKDANELSMNASIKQ--SSQSLHGDIPQKQREIT 326

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L  F+ GT +++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G    
Sbjct: 327 LKGFRSGTFEVLVATNVAARGLDIPEVDLVVQCSPPKDVESYIHRSGRTGRAGRTGVCIC 386

Query: 348 LVAKEDIKHIDAIEK 362
              +++   +  +E+
Sbjct: 387 FYQRKEEDQLRYVEQ 401


>gi|11513344|pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
 gi|11513345|pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
          Length = 394

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/377 (34%), Positives = 204/377 (54%), Gaps = 8/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L   ++  V   G+ +P+ IQ + I  +++ HDV   AQ+GTGKT +F +  L  
Sbjct: 23  FDDXELDENLLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFSIAALQR 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     V+ P+ L L PTRELA Q+         + ++ V   IGG  F    + L R 
Sbjct: 83  IDTS---VKAPQALXLAPTRELALQIQKVVXALAFHXDIKVHACIGGTSFVEDAEGL-RD 138

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A +++ TPGR+ D+  R +   + I+  ++DEAD  L  GF   I  I +L+P T Q +L
Sbjct: 139 AQIVVGTPGRVFDNIQRRRFRTDKIKXFILDEADEXLSSGFKEQIYQIFTLLPPTTQVVL 198

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQLLQS 241
            SAT  +++ +V+  F +NP RI V     T E I+  +V     +Y  +C  L  L  S
Sbjct: 199 LSATXPNDVLEVTTKFXRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYEC--LTDLYDS 256

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   L    F+V AI+ ++ Q+ R  I   F+ G+ +++++
Sbjct: 257 I-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIXKEFRSGSSRILIS 315

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  ED+     +E
Sbjct: 316 TDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAXRELE 375

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    +++ L  D+++L
Sbjct: 376 KFYSTQIEELPSDIATL 392


>gi|156847065|ref|XP_001646418.1| hypothetical protein Kpol_2001p67 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380643|sp|A7TGU7|DHH1_VANPO RecName: Full=ATP-dependent RNA helicase DHH1
 gi|156117094|gb|EDO18560.1| hypothetical protein Kpol_2001p67 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 484

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/360 (33%), Positives = 188/360 (52%), Gaps = 7/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTA+FV+P    
Sbjct: 36  FEDFYLKRELLMGIFEAGFEKPSPIQEESIPVALAGRDILARAKNGTGKTAAFVIP---T 92

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEK +++    + LI+ PTRELA Q +      GK+  ++  +  GG        +L   
Sbjct: 93  LEKVKSKHNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNET 152

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +L+ TPGR+LD  +R    ++   + ++DEAD+ML   F   I+ I   +P   Q+LL
Sbjct: 153 VHILVGTPGRVLDLASRKVADLSECNLFIMDEADKMLSRDFKSIIEQILVFLPKNHQSLL 212

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    +++   N L  P  I +     T + I   +   + +  +K   L  L  S+
Sbjct: 213 FSATFPLSVKEFMVNHLHKPYEINL-MDELTLKGITQYY--AFVEEKQKLHCLNTLF-SK 268

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   IIFCN    V  L   +   G+S    H  + Q+ R ++   F++G ++ +V S
Sbjct: 269 LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNRVFHEFRQGKVRTLVCS 328

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+   D  ++  IE+
Sbjct: 329 DLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQ 388


>gi|269103446|ref|ZP_06156143.1| ATP-dependent RNA helicase SrmB [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163344|gb|EEZ41840.1| ATP-dependent RNA helicase SrmB [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 374

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 110/297 (37%), Positives = 173/297 (58%), Gaps = 6/297 (2%)

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R L+L PTRELA QVAD+     K  +L +  + GGI ++   + L +  D+++ TPGR+
Sbjct: 12  RVLVLTPTRELAIQVADHARALAKYTDLKIFTITGGISYDEHAELLGKTQDIVVATPGRL 71

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE-LQ 192
           +++    +     IE L++DEADRMLDMGF   ++ I     + +Q+LLFSAT+  + ++
Sbjct: 72  MEYIEAERFDCRAIECLILDEADRMLDMGFGKIVERINKECRWRQQSLLFSATLEGKGVR 131

Query: 193 KVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
           + S++ L  P  +EVN  PS       H           K A+L+ LL+  +  +  IIF
Sbjct: 132 EFSQHILNEP--LEVNAEPSRRERKKIHQVYHRCDNMEHKLAILEHLLR--NDAERTIIF 187

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
              ++ +  L   LE +    C I G + Q +R   +  F+EG I +M+A+D+AARG+D+
Sbjct: 188 VKTRERLAELRGQLETRQIKCCWIQGEMAQAARSNTIRRFREGVINVMIATDVAARGIDL 247

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           PDV HV NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D   ++ + + I+++V
Sbjct: 248 PDVSHVINFDMPRTADVYLHRIGRTARAGKKGSAISLVEAHDQAMMERVCRYIKEEV 304


>gi|228476149|ref|ZP_04060857.1| ATP-dependent RNA helicase [Staphylococcus hominis SK119]
 gi|228269972|gb|EEK11452.1| ATP-dependent RNA helicase [Staphylococcus hominis SK119]
          Length = 448

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 128/387 (33%), Positives = 204/387 (52%), Gaps = 25/387 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L+  ++ AV D  + KPT IQ + IP + +  ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEIFNLNTNLIDAVKDLNFNKPTEIQNRIIPRIKKGTNLIGQSQTGTGKSHAFLLPLIDL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQ---VADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +      ++ P+++++ PTRELA Q   VA +   +  +  + V+L IGG   E   ++ 
Sbjct: 66  IN---TDIKEPQSIVVAPTRELAQQLYKVASHLASFQSD--IKVSLFIGGTDIEKDKQRT 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   ++I TP RI D    G L ++    L+IDEAD ++D+G I  +  I + +     
Sbjct: 121 NQQPQLVIGTPTRINDLAQSGHLHIHKASYLIIDEADLLIDLGLIEDVDYIAARLDENAN 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +FSAT+   L+     +L +P+ + V+  S   + IE   + T     K    + + L
Sbjct: 181 IAVFSATIPKSLEPFLNKYLSHPEYVVVDNKSQNKKNIEFYLIPT-----KGTEKVDKTL 235

Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           Q  D +     IIFCN ++N   L  SL + G  V  IHG +  R R + +   +    Q
Sbjct: 236 QLIDILNPYLCIIFCNSRENANELAQSLNESGIKVGMIHGGLTPRERKQQMKRIRNLDFQ 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++ASDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I
Sbjct: 296 YVIASDLASRGIDIEGVSHVVNFDVPNDIDFFTHRVGRTGRGNYKGVALTLYSPDEEHNI 355

Query: 358 DAIEKLIEKK------VDWLNGDLSSL 378
                LIE K      VD  NG+L  +
Sbjct: 356 S----LIEDKGYHFDNVDIKNGELKPI 378


>gi|168028511|ref|XP_001766771.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681980|gb|EDQ68402.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 406

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 115/361 (31%), Positives = 195/361 (54%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P + 
Sbjct: 33  EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPAIE 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++ +  V++   L+L PTRELA Q +   ++  K+ N+ + +  GG        +L +
Sbjct: 93  KIDQNKNAVQV---LLLVPTRELALQTSQVCKELAKHLNIQIMVTTGGTSLRDDIMRLYQ 149

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD  N+G   +    +LV+DEAD++L   F P ++ +   +P  RQ L
Sbjct: 150 PVHLLVGTPGRVLDLANKGVCNLKECTMLVMDEADKLLSPEFQPLVEQLIGFLPENRQIL 209

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    ++   + FL+ P  I +    +     ++     + +  +K   L  L  S
Sbjct: 210 LYSATFPVTVKSFKDRFLRKPYVINLMDELTLKGITQY---YAFVEERQKVHCLNTLF-S 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 266 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQSHRNRVFHDFRNGACRNLVS 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 326 SDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 385

Query: 362 K 362
           +
Sbjct: 386 Q 386


>gi|85001021|ref|XP_955229.1| RNA helicase [Theileria annulata strain Ankara]
 gi|65303375|emb|CAI75753.1| RNA helicase, putative [Theileria annulata]
          Length = 976

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 193/363 (53%), Gaps = 21/363 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+  GL   ++  +    Y +P PIQ++ IP ++   DV GIA+TG+GKT +F+LP +  
Sbjct: 370 FSQCGLPDPILKILEKREYERPFPIQMQCIPALMCGRDVIGIAETGSGKTLAFLLPAI-- 427

Query: 63  LEKGRARVRMPR--------TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
               R  +  P          L++ PTREL  Q+++   K+ +   L    + GG     
Sbjct: 428 ----RHALDQPSLRENDGMIVLVIAPTRELVIQISNESSKFSRAVGLKTLAIYGGAGIGE 483

Query: 115 QNKKLERGADVLICTPGRILD--HFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNIT 171
           Q   L+RGA+++I TPGR++D    ++GK+  +  +  LV+DEADRM DMGF P I  I 
Sbjct: 484 QLNALKRGAEIVIGTPGRLIDVLTLSKGKVTNLRRVTFLVLDEADRMFDMGFAPQISAIV 543

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSK 230
             +   RQT LFSAT    ++ +++  L  P +I V     +A  + +H  V    +   
Sbjct: 544 GNIRPDRQTALFSATFPIMIENLAKKILAKPLQIVVGQRGKSASQVDQHVLVLNEEKKLL 603

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K   L           N IIF N +    +L + L   G+    +HG +DQ  R   L++
Sbjct: 604 KLLKLLGEWHEHG---NIIIFVNTQLESEHLFNDLLAYGYDAGILHGGVDQTDREFTLND 660

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   +++A+ +AARG+D+  V  V N+  P+  E+Y+HR+GRTGRAG  G ++T + 
Sbjct: 661 FREGKKTILIATSIAARGIDVKSVVLVINYAAPDHFEDYVHRVGRTGRAGTIGTSYTFLT 720

Query: 351 KED 353
            E+
Sbjct: 721 PEE 723


>gi|326505420|dbj|BAJ95381.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326522769|dbj|BAJ88430.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 524

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 124/389 (31%), Positives = 208/389 (53%), Gaps = 17/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 151 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 210

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  +++   +IL PTRELA Q +   ++ GK  N+ V +  GG   +    +L +
Sbjct: 211 KIDPEKNAIQV---VILVPTRELALQTSQVCKELGKYLNIEVMVSTGGTSLKDDIMRLYQ 267

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L  TPGRILD   +G  ++N   +L++DEAD++L   F P ++ +   +P +RQ L
Sbjct: 268 PVHLLAGTPGRILDLTKKGICMLNECSMLIMDEADKLLAPEFQPSVEQLIRYLPASRQLL 327

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++   + +L  P  I +     T + I   +   + +  +K   L  L  S
Sbjct: 328 LFSATFPVTVKDFKQKYLPRPYVINL-MDELTLKGITQYYA--FVEERQKVHCLNTLF-S 383

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 384 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 443

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 444 TDLFTRGIDIQAVNVVINFDFPKTAETYLHRVGRSGRFGHLGLAVNLITYEDRFNMYRIE 503

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           + +  ++  +        PP  +ID+A++
Sbjct: 504 QELGTEIKTI--------PP--QIDLAEY 522


>gi|50305963|ref|XP_452942.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660551|sp|Q6CSZ7|DHH1_KLULA RecName: Full=ATP-dependent RNA helicase DHH1
 gi|49642075|emb|CAH01793.1| KLLA0C16599p [Kluyveromyces lactis]
          Length = 514

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 133/416 (31%), Positives = 208/416 (50%), Gaps = 21/416 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++  + +AG+ KP+PIQ + IP+ +   D+   A+ GTGKTA+FV+P    
Sbjct: 38  FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAIAGKDILARAKNGTGKTAAFVIP---T 94

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEK + ++   + LI+ PTRELA Q +      GK+  ++  +  GG        +L   
Sbjct: 95  LEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIMRLNEP 154

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +L+ TPGR+LD  +R    ++   + ++DEAD+ML   F    + I   +P  RQ LL
Sbjct: 155 VHILVGTPGRVLDLASRRVTDLSECHLFIMDEADKMLSRDFKVLAEQILGFLPERRQLLL 214

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    +++     L+NP  I +     T + I   +   + +  +K   L  L  S+
Sbjct: 215 FSATFPVTVKEFMVKHLKNPHEINLMD-ELTLKGISQFYA--FVEEKQKLHCLNTLF-SK 270

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   IIFCN    V  L   + + GFS    H  + Q  R K+   F++G ++ +V S
Sbjct: 271 LQINQAIIFCNSTNRVELLAKKITELGFSCYYSHARMKQSERNKVFHEFRQGKVRTLVCS 330

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+   D  ++  IE+
Sbjct: 331 DLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQ 390

Query: 363 LIEKKVDWLNGDL---------SSLNP---PLEKIDIAQHNHARKNN--PIPQKST 404
            +  ++  +   +         SS  P   PLE + I  +   +  N  P+P + T
Sbjct: 391 ELNTEIAPIPSQIDKSLYVAEDSSAVPIPFPLESLPITANAPQQPANAEPLPPQQT 446


>gi|289751901|ref|ZP_06511279.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium
           tuberculosis T92]
 gi|289692488|gb|EFD59917.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium
           tuberculosis T92]
          Length = 328

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 104/258 (40%), Positives = 157/258 (60%), Gaps = 5/258 (1%)

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G P+E Q + L  GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+
Sbjct: 32  GRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLPDIE 91

Query: 169 NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYA 226
            I   +P  RQ++LFSATM D +  ++  F+  P  I    P S+A  +  E      +A
Sbjct: 92  RILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYRAHA 151

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
               K  L+ ++LQ++D     +IF   K+    +   L ++GF+V A+HG++ Q +R K
Sbjct: 152 L--DKVELVSRVLQARDRGAT-MIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREK 208

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G I ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G A 
Sbjct: 209 ALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAV 268

Query: 347 TLVAKEDIKHIDAIEKLI 364
           TLV  +++     I++ +
Sbjct: 269 TLVDWDELPRWSMIDQAL 286


>gi|194761004|ref|XP_001962722.1| GF15595 [Drosophila ananassae]
 gi|190616419|gb|EDV31943.1| GF15595 [Drosophila ananassae]
          Length = 389

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 205/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F    + 
Sbjct: 17  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATF---SIA 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    +R  + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 74  ILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 134 GCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F++ P  I V     T E I+  F     Q + K   L  L  +
Sbjct: 194 LLSATMPPDVLEVSRCFMREPVSILVKKEELTLEGIKQ-FYVNVKQENWKLGTLCDLYDT 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 253 L-SITQSVIFCNTRRKVDQLTQEMSSHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  +D + +  IE
Sbjct: 312 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIE 371

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 372 QFYHTTIEEMPANIADL 388


>gi|307104451|gb|EFN52705.1| hypothetical protein CHLNCDRAFT_36787 [Chlorella variabilis]
          Length = 689

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 118/355 (33%), Positives = 195/355 (54%), Gaps = 6/355 (1%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           GLS   V A+ + G     PIQ       ++  D+   A+TG+GKT +F +P++  +  G
Sbjct: 157 GLSEGSVRALEERGITSLFPIQKTVFEPAMRGADLIARAKTGSGKTLAFAIPIIEKIMAG 216

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
              +R P+ L+L PTRELA QV                      P   Q K+L RG D++
Sbjct: 217 PRNLRKPQCLVLAPTRELAKQVEREIAATAPGLGCGCYYGGN--PIGPQLKELRRGVDIV 274

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGRI+D  ++  L ++ +  +V+DEAD+ML++GF   ++ I   VP  RQT+LFSAT
Sbjct: 275 VGTPGRIIDLIDQDALDLSMVRFVVLDEADQMLNVGFEKDVETILENVPQERQTMLFSAT 334

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
           +   ++K+ + +L NP+ I++    +T +  +          +++  L+  LL       
Sbjct: 335 LPRWVKKLVKQYLNNPENIDLVGEGNTGQDPDSITALAVPADARRSVLVD-LLTVYGEGG 393

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVC-AIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
             I+F   K+    +  S+   G   C A+HG++ QR R K+L++F+   + ++VA+D+A
Sbjct: 394 KAIVFTQTKREADEVAASV--GGHLPCGALHGDMSQREREKVLASFRANKLMVLVATDVA 451

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ARGLDIPDV  V ++++P   E+++HR GRTGRAG+ G A  +   ++I +   I
Sbjct: 452 ARGLDIPDVDVVVHYELPQDPESFLHRSGRTGRAGKSGTAIAMFQPKEIGYFKRI 506


>gi|294676721|ref|YP_003577336.1| ATP-dependent RNA helicase DbpA [Rhodobacter capsulatus SB 1003]
 gi|294475541|gb|ADE84929.1| ATP-dependent RNA helicase DbpA [Rhodobacter capsulatus SB 1003]
          Length = 670

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 124/352 (35%), Positives = 192/352 (54%), Gaps = 10/352 (2%)

Query: 2   DFADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           DF  L   P  +   L A GY   TP+Q       L   D+   AQTG+GKT +F L + 
Sbjct: 3   DFPHL---PAALAEALSARGYDALTPVQDAVTRPELAGRDLLVSAQTGSGKTVAFGLAIS 59

Query: 61  TIL--EKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L  E G      +PR L++ PTRELA QV+       +     +   +GG+   A+ +
Sbjct: 60  AELLGENGISPYPDLPRALVVAPTRELAVQVSRELSWLYEKAGAVITGAVGGMDARAERR 119

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LERGA +++ TPGRI DH  RG L ++ +  +V+DEAD MLDMGF   ++ I    P  
Sbjct: 120 ALERGAHIVVGTPGRICDHIRRGALDLSALSAVVLDEADEMLDMGFREDLEFILESAPEG 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R+TL+FSAT+  E++++++ F +  +RI  +T SS     +  +       S +   +  
Sbjct: 180 RRTLMFSATVPREIERLAQTFQREAERI--STVSSRESHADIDYRGVLVDRSDRENAIVN 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+  +  +  I+FC+ +  V +L   L  +GFSV A+ G + Q  R + L   ++G  +
Sbjct: 238 LLRLHEA-ERAIVFCSTRAAVTHLTGKLLNRGFSVVALSGELTQDERSRALQMMRDGRAR 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           + +A+D+AARG+D+P +  V + D+P   E  +HR GRTGRAGR G +  +V
Sbjct: 297 VCIATDVAARGIDLPGLELVIHADLPMNREGLLHRSGRTGRAGRKGLSAIVV 348


>gi|17136248|ref|NP_476595.1| eukaryotic initiation factor 4a, isoform C [Drosophila
           melanogaster]
 gi|24582075|ref|NP_723137.1| eukaryotic initiation factor 4a, isoform A [Drosophila
           melanogaster]
 gi|24582078|ref|NP_723138.1| eukaryotic initiation factor 4a, isoform B [Drosophila
           melanogaster]
 gi|24582080|ref|NP_723139.1| eukaryotic initiation factor 4a, isoform D [Drosophila
           melanogaster]
 gi|12644381|sp|Q02748|IF4A_DROME RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A
 gi|5052532|gb|AAD38596.1|AF145621_1 eukaryotic initiation factor-4a [Drosophila melanogaster]
 gi|17861902|gb|AAL39428.1| GM14109p [Drosophila melanogaster]
 gi|21464294|gb|AAM51950.1| GH17619p [Drosophila melanogaster]
 gi|22945717|gb|AAF52317.2| eukaryotic initiation factor 4a, isoform A [Drosophila
           melanogaster]
 gi|22945718|gb|AAN10566.1| eukaryotic initiation factor 4a, isoform C [Drosophila
           melanogaster]
 gi|22945719|gb|AAN10567.1| eukaryotic initiation factor 4a, isoform B [Drosophila
           melanogaster]
 gi|22945720|gb|AAN10568.1| eukaryotic initiation factor 4a, isoform D [Drosophila
           melanogaster]
 gi|260166767|gb|ACX32995.1| LD22268p [Drosophila melanogaster]
          Length = 403

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F    + 
Sbjct: 31  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATF---SIA 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    +R  + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 88  ILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 148 GCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F+++P  I V     T E I+  F     Q + K   L  L  +
Sbjct: 208 LLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQ-FYVNVKQENWKLGTLCDLYDT 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 267 L-SITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  +D + +  IE
Sbjct: 326 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIE 385

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 386 QFYHTTIEEMPANIADL 402


>gi|134034145|sp|Q0CXD0|IF4A_ASPTN RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
          Length = 396

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 127/376 (33%), Positives = 210/376 (55%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L  +++  V   G+ +P+ IQ + I  +++ +DV   AQ+GTGKTA+F +   + 
Sbjct: 25  FDSMELKAELLRGVYAYGFERPSAIQQRAIMPIIKGNDVIAQAQSGTGKTATFSI---SA 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    ++  + LI+ PTRELA Q+       G   N+     IGG       K L+ G
Sbjct: 82  LQKIDPNLKACQALIVAPTRELAQQIQKVVVAIGDFMNINCHACIGGTAIRDDMKALQEG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRI D   R  L  + +++ ++DEAD ML  GF   I +I  L+P   Q +L
Sbjct: 142 PPIVVGTPGRIQDMIQRRVLKTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQATQVVL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 202 LSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 260

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A+
Sbjct: 261 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDIIMKEFRSGSSRVLIAT 319

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 320 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 379

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 380 FYSTQIEEMPMNVADL 395


>gi|22536473|ref|NP_687324.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae
           2603V/R]
 gi|25010353|ref|NP_734748.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae NEM316]
 gi|76787716|ref|YP_329013.1| DEAD/DEAH box helicase [Streptococcus agalactiae A909]
 gi|77404947|ref|ZP_00782048.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae H36B]
 gi|77410606|ref|ZP_00786966.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae CJB111]
 gi|22533303|gb|AAM99196.1|AE014204_14 ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 2603V/R]
 gi|23094705|emb|CAD45924.1| unknown [Streptococcus agalactiae NEM316]
 gi|76562773|gb|ABA45357.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae A909]
 gi|77163321|gb|EAO74272.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae CJB111]
 gi|77176386|gb|EAO79154.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae H36B]
          Length = 447

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 192/367 (52%), Gaps = 11/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D    P +  A+ +  +V PT +Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDFNFKPYIQRALDELKFVDPTDVQAKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKK 118
             L++    V++   +I  P+REL  Q+    ++  ++    + V   +GG     Q +K
Sbjct: 61  EKLDESSDDVQV---VITAPSRELGTQIYQATKQIAEHSEQEIRVVNYVGGTDKLRQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+     ++I TPGRI D    G L ++     V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LKVSQPHIVIGTPGRIYDLVKSGDLAIHKAHTFVVDEADMTLDMGFLDTVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL-LQ 236
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  ++T  +      L L 
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEKIKTATVIADTIDNWLLSTKGRDKNAQILELS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L+Q    M    IF N K+    L   L   G  V  IHG I  R R +I++  K    
Sbjct: 238 KLMQPYLAM----IFVNTKERADELHSYLSSNGLKVAKIHGGIAPRERKRIMNQVKNLEF 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   
Sbjct: 294 EYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSD 353

Query: 357 IDAIEKL 363
           I  +EKL
Sbjct: 354 IRELEKL 360


>gi|241949195|ref|XP_002417320.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223640658|emb|CAX44953.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 543

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 186/360 (51%), Gaps = 7/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTASF++P L +
Sbjct: 32  FEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQL 91

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    +V+    LIL PTRELA Q +      GK+      +  GG        +L   
Sbjct: 92  VKPKLNKVQ---ALILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIVRLHDP 148

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +L+ TPGR+LD   R  + ++   + V+DEAD+ML   F   I+ I    P  RQ LL
Sbjct: 149 VHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKMLSREFKGIIEQILEFFPPNRQALL 208

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    ++   +  L  P  I +     T + I   +   + +  +K   L  L  S+
Sbjct: 209 FSATFPLAVKSFMDKHLTKPYEINL-MDELTLKGISQFYA--FVEEKQKLHCLNTLF-SK 264

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   IIFCN    V  L   + + G+S    H  + Q++R K+   F++G ++ +V S
Sbjct: 265 LQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCS 324

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L++  D   +  IE+
Sbjct: 325 DLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYSLYKIEQ 384


>gi|168490848|ref|ZP_02714991.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC0288-04]
 gi|183574625|gb|EDT95153.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC0288-04]
          Length = 445

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 194/368 (52%), Gaps = 13/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   + ++ V ++  +GG     Q +K
Sbjct: 61  QQLDEASDSVQ---AVITAPSRELATQIYQVSRQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           LE     ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGCLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ- 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T   + K   + Q 
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKG-HDKNAQIYQL 236

Query: 237 -QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            QL+Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K   
Sbjct: 237 TQLMQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLD 292

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D  
Sbjct: 293 FEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDS 352

Query: 356 HIDAIEKL 363
            I  +EKL
Sbjct: 353 DIRELEKL 360


>gi|168486746|ref|ZP_02711254.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC1087-00]
 gi|183570245|gb|EDT90773.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC1087-00]
          Length = 447

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 194/368 (52%), Gaps = 13/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   + ++ V ++  +GG     Q +K
Sbjct: 61  QQLDEASDSVQ---AVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           LE     ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGCLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ- 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T   + K   + Q 
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKG-HDKNAQIYQL 236

Query: 237 -QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            QL+Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K   
Sbjct: 237 TQLMQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLD 292

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D  
Sbjct: 293 FEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDS 352

Query: 356 HIDAIEKL 363
            I  +EKL
Sbjct: 353 DIRELEKL 360


>gi|167533121|ref|XP_001748241.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773361|gb|EDQ87002.1| predicted protein [Monosiga brevicollis MX1]
          Length = 473

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 139/418 (33%), Positives = 219/418 (52%), Gaps = 33/418 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  ++    +  + +PT +Q   +P +L   DV   A+TG+GKTA+F LP+L
Sbjct: 1   MSFEDLKLSSWLIRQCRNLNFTRPTAVQQACVPAILNDEDVYAAAKTGSGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L      V     ++L PTRELA Q++D F+  GK   + VA ++GGI    Q  +L 
Sbjct: 61  EQLSHDPYGVY---AVVLTPTRELAFQISDQFQSLGKPIGVRVATIVGGIDSIKQAVELS 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR-MLDMGFIPYIQNITSLVPFTRQ 179
           R   +++ TPGR+  H             LV+DEADR M +     ++  I   +P  RQ
Sbjct: 118 RRPHIIVATPGRLAVH------------TLVLDEADRLMTNETLQGHLDVILDALPEERQ 165

Query: 180 TLLFSATMTDELQ-KVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQ 236
            LLFSAT+ +E   K+S+   ++  R       +T  T+   + F+  + ++     +L+
Sbjct: 166 NLLFSATLLEEPSGKISQQLHRDLFRYSEIKEEATVTTLRQRYVFLPAHMRFPYLIHILR 225

Query: 237 QLLQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIH--GNIDQRSRMKILSNFKE 293
           QL    D   N I+ F    +    L  +L +      A+H    + Q++R+  L  FK 
Sbjct: 226 QL---HDDKNNSIVLFVPTCRLCEELALTLRELDLRCTALHSQARMSQKARLDALHKFKS 282

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             I +++A+D+A+RGLDIP V +V N++VP   E+Y+HR+GRT RAGR G A TL+ + D
Sbjct: 283 SFIHILLATDVASRGLDIPTVTYVINYNVPRAPEDYVHRVGRTARAGRGGMAITLMDERD 342

Query: 354 IKHIDAIEKLIEKKVDWLNGDL--SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           I+ + AIE+ I  K+   + D+    +   + KI+I     AR+   +    +GFD R
Sbjct: 343 IELLQAIEEHINVKLTAYD-DIKDEEIVQSMNKINI-----ARRAAELQLLESGFDER 394


>gi|294893610|ref|XP_002774558.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239879951|gb|EER06374.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 639

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 126/370 (34%), Positives = 186/370 (50%), Gaps = 28/370 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++ A+   G  +PT IQ++ +P  L   D+ GIA TG+GKT  F +P   I
Sbjct: 195 FKEMLFPQGILEALKSKGISRPTQIQMQGLPEALLGRDLIGIAFTGSGKTLVFAIP--AI 252

Query: 63  LEKGRARVRMPRT-------LILEPTRELAAQVADNFEKYGKNYN-------------LT 102
           L      +R P T       L++ P+RELA Q  +  E Y                  L 
Sbjct: 253 LRAMEMEMRAPVTDSEGPFCLLIAPSRELAQQTHEVVEYYASYLTGLPSSRSRHRLPRLR 312

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
             L IGG     Q   + RG  ++  TPGR+    N     +     + +DEADRM+D+G
Sbjct: 313 CQLCIGGESLGRQAANVRRGVHIVTATPGRLNHMLNEKMFTLAQCVYICLDEADRMVDLG 372

Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           F   ++N        RQTLLFSATM  ++Q+ + + L NP  + +N   + A  ++   V
Sbjct: 373 FEDEVRNTLDHFGHQRQTLLFSATMPRKIQEFATSALVNP--VTINVGRAGAANLD---V 427

Query: 223 ATYAQYSKKCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
               +Y K  + L  LLQ  Q T    ++FC+ K +   +   L  +G   CAIHG ++Q
Sbjct: 428 VQEVEYVKAESKLTYLLQCLQKTAPPVMVFCSDKASCDEVLEYLLLKGVGACAIHGGLEQ 487

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
             R K    FK G   +++ +D+A++GLD P + HV N+D+P   ENY+HRIGRTGR GR
Sbjct: 488 SERHKSTRLFKSGAKDVLIGTDVASKGLDFPAIQHVINYDMPKEIENYVHRIGRTGRCGR 547

Query: 342 HGKAFTLVAK 351
            G A T + K
Sbjct: 548 TGVATTFINK 557


>gi|330932532|ref|XP_003303815.1| hypothetical protein PTT_16176 [Pyrenophora teres f. teres 0-1]
 gi|311319958|gb|EFQ88104.1| hypothetical protein PTT_16176 [Pyrenophora teres f. teres 0-1]
          Length = 512

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 122/364 (33%), Positives = 193/364 (53%), Gaps = 11/364 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 49  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 108

Query: 61  TILEKGRARVRMPRT--LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 R   + P+T  LIL PTRELA Q +   ++ GK+ N+ V +  GG   +    +
Sbjct: 109 E-----RVNPKSPKTQALILVPTRELALQTSQVCKQLGKHLNINVMVSTGGTGLKDDIIR 163

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L     +++ TPGRILD   +G   ++  +  V+DEAD++L   F P ++ +    P  R
Sbjct: 164 LSDPVHIIVGTPGRILDLAGKGVADLSACQTFVMDEADKLLSPEFTPVVEQLLGFHPKDR 223

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT    ++   +  + +P  I +     T   I   +   + +  +K   L  L
Sbjct: 224 QVMLFSATFPIVVKSFKDKHMNSPYEINL-MDELTLRGITQYYA--FVEEKQKVHCLNTL 280

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             ++  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + 
Sbjct: 281 F-NKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRN 339

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++ 
Sbjct: 340 LVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLY 399

Query: 359 AIEK 362
            IE+
Sbjct: 400 RIEQ 403


>gi|149065925|gb|EDM15798.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_b [Rattus
           norvegicus]
          Length = 523

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 119/363 (32%), Positives = 194/363 (53%), Gaps = 33/363 (9%)

Query: 27  IQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRARVRMPRTLILEP 80
           +Q +++P ++Q              T  ++LP +        LE+G      P  L+L P
Sbjct: 3   VQNRSLPSIMQ--------------TFRYLLPAIVHINHQPYLERGDG----PICLVLAP 44

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TRELA QV    + YGK   L    + GG P   Q + LERG ++ I TPGR++D    G
Sbjct: 45  TRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESG 104

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200
           K  +     LV+DEADRMLDMGF P I+ I   +   RQTL++SAT   E+++++E+FL+
Sbjct: 105 KTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLR 164

Query: 201 NPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
           +  +I V     +A     + ++ C  +   +  K   L+++++  ++     IIF   K
Sbjct: 165 DYTQINVGNLELSANHNILQIVDVCMES--EKDHKLIQLMEEIMAEKENKT--IIFVETK 220

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           +   +L   + + G+    IHG+  Q  R  +L+ F+ G   +++A+D+A+RGLD+ DV 
Sbjct: 221 RRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVK 280

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDL 375
            V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    + K++E+    +N  L
Sbjct: 281 FVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKL 340

Query: 376 SSL 378
             L
Sbjct: 341 MQL 343


>gi|114705391|ref|ZP_01438299.1| DEAD/DEAH box helicase [Fulvimarina pelagi HTCC2506]
 gi|114540176|gb|EAU43296.1| DEAD/DEAH box helicase [Fulvimarina pelagi HTCC2506]
          Length = 587

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 118/333 (35%), Positives = 184/333 (55%), Gaps = 6/333 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR---VRMPRTL 76
           GY + T +Q   +   L   D+   AQTG+GKT ++ L M   L     R      P  L
Sbjct: 18  GYTQLTDVQTAVLEEPLVERDLLVSAQTGSGKTIAYGLAMAGTLLGEAERFGPADEPVAL 77

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           I+ PTRELA QV +            +A L+GG+   A+ ++L  G  +++ TPGR+ DH
Sbjct: 78  IVAPTRELAMQVTNELGWLYAGTGAKLATLVGGMDPRAERRRLGDGVHIVVGTPGRLRDH 137

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
             RG L + N++ LV+DEAD ML++GF   ++ +    P  R+TLLFSAT+   + +++ 
Sbjct: 138 LTRGALQIGNLKTLVLDEADEMLNLGFREDLEFLLQATPAERRTLLFSATLPKPIIQMTR 197

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
           N+ +N  RIE+    S    IE+  V   A    + A+   L  ++    + I+FCN ++
Sbjct: 198 NYQRNAHRIEIAKGQSGHADIEYRAV-RIAPNEVEHAVTNVLRHAE--QPSAIVFCNTRE 254

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
            V +L   L ++GF+   + G + Q  R + +   ++G  ++ VA+D+AARGLD+P +G 
Sbjct: 255 TVRHLSSGLIERGFAAVTLSGELGQAERNQAIQALRDGRARVCVATDVAARGLDLPSLGL 314

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           V + D+P+ AE   HR GRTGRAGR G +  LV
Sbjct: 315 VIHADLPSDAETLQHRSGRTGRAGRKGVSVLLV 347


>gi|115384944|ref|XP_001209019.1| eukaryotic initiation factor 4A [Aspergillus terreus NIH2624]
 gi|114196711|gb|EAU38411.1| eukaryotic initiation factor 4A [Aspergillus terreus NIH2624]
          Length = 419

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 126/367 (34%), Positives = 205/367 (55%), Gaps = 5/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L  +++  V   G+ +P+ IQ + I  +++ +DV   AQ+GTGKTA+F +   + 
Sbjct: 48  FDSMELKAELLRGVYAYGFERPSAIQQRAIMPIIKGNDVIAQAQSGTGKTATFSI---SA 104

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    ++  + LI+ PTRELA Q+       G   N+     IGG       K L+ G
Sbjct: 105 LQKIDPNLKACQALIVAPTRELAQQIQKVVVAIGDFMNINCHACIGGTAIRDDMKALQEG 164

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGRI D   R  L  + +++ ++DEAD ML  GF   I +I  L+P   Q +L
Sbjct: 165 PPIVVGTPGRIQDMIQRRVLKTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQATQVVL 224

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 225 LSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A+
Sbjct: 284 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDIIMKEFRSGSSRVLIAT 342

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 343 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 402

Query: 363 LIEKKVD 369
               +++
Sbjct: 403 FYSTQIE 409


>gi|82569452|gb|ABB83368.1| VASA-like protein [Pleurodeles waltl]
          Length = 463

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 130/391 (33%), Positives = 211/391 (53%), Gaps = 25/391 (6%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRA----RVRMP 73
           AGYVK TP+Q  +IP+VL + D+   AQTG+GKTA+F+LP+L  ++  G A     ++ P
Sbjct: 48  AGYVKLTPVQKYSIPIVLAKRDLMACAQTGSGKTAAFLLPILAHMMRDGVAPHSLDLQEP 107

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
             +I+ PTREL  Q+  +  K+     +   ++ GG       +++ +G ++L  TPGR+
Sbjct: 108 EAIIVAPTRELINQIFLDARKFAYGTCIKPVVVYGGTQTFHSLRQIYQGCNILCATPGRL 167

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLFSATMTD 189
           +D   R K+ +  +  LV+DEADRMLDMGF P ++ + +         RQTL+FSAT  +
Sbjct: 168 IDIIKREKIGLTKLRYLVLDEADRMLDMGFGPDMKVLVNSPGMPSKEDRQTLMFSATFPE 227

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
            +Q +++ FL++     V      A +     +    Q+ KK  L++ +LQ    ++  +
Sbjct: 228 RIQSLAKEFLKSDYLFVVVGQVGGACSDVEQIIIPVGQHGKKDKLVE-ILQGLG-IERTM 285

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           +F   KK    L   L ++     +IHG+  Q+ R + L++F+ G   ++VA+++AARGL
Sbjct: 286 VFVKTKKRADYLTTLLCQENVLATSIHGDRLQKEREEALADFRFGKCNVLVATNVAARGL 345

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           DI +V HV  +D+ +  E Y+HRIGRTGR G  GKA T    +D +       L++   D
Sbjct: 346 DIENVQHVIIYDLSDNIEEYVHRIGRTGRCGNVGKAITFFDTDDNEDRTVARSLVKVLSD 405

Query: 370 -------WL-------NGDLSSLNPPLEKID 386
                  WL       +G  SS+      +D
Sbjct: 406 AQQEVPAWLEEVAFSASGTFSSIGSTFASVD 436


>gi|255077858|ref|XP_002502509.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299]
 gi|226517774|gb|ACO63767.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299]
          Length = 790

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 188/341 (55%), Gaps = 11/341 (3%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA----RVRMPRTLILEPT 81
           PIQ   +   LQ  DV G A+TGTGKT  F LP++  L    +    R R PR ++L PT
Sbjct: 158 PIQASVLEPALQGRDVVGRARTGTGKTLGFSLPIIESLLSNPSNRTDRSRNPRCIVLAPT 217

Query: 82  RELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGK 141
           RELA QV    +      +L    + GG+    Q + L RG D+++ TPGR++D   RG 
Sbjct: 218 RELANQVEKEIQ--ATVPSLRTLCVYGGVAISNQERPLRRGVDIVVGTPGRLIDLIQRGS 275

Query: 142 LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQN 201
           L +++IE  V+DEAD+ML +GF   ++ I   +P  RQT LFSATM   + ++++ +L +
Sbjct: 276 LNLHDIEYCVLDEADQMLAVGFEEDVERIMEEIPEQRQTFLFSATMPSWVTRITQKYLAD 335

Query: 202 PKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
              I++  +     A+TI+   ++    ++ +  +L  L+         I F   K+   
Sbjct: 336 HVTIDLVGSQEQKVADTID--VMSCACSHTSRTTILADLVTVYGKGAKAICFTQTKREAD 393

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            +  +L ++  +   +HG+I Q  R + L  F++G   ++VA+D+AARGLDI DV  V +
Sbjct: 394 EVTAALGRR-MATEVLHGDIAQAQRERTLKRFRDGRFSVLVATDVAARGLDITDVDLVVH 452

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +++P+  E+++HR GRTGRA + G A  +    +   I +I
Sbjct: 453 YELPHDTESFVHRCGRTGRANKKGAAIAMYTPREKSRIRSI 493


>gi|226499134|ref|NP_001147316.1| ATP-dependent rRNA helicase spb4 [Zea mays]
 gi|195609842|gb|ACG26751.1| ATP-dependent rRNA helicase spb4 [Zea mays]
          Length = 641

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 139/381 (36%), Positives = 211/381 (55%), Gaps = 37/381 (9%)

Query: 3   FADL--GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           F++L   LSP+VV A+   G+ + TP+Q   IP +L   DV   A TG+GKT +F++P++
Sbjct: 20  FSELSPALSPEVVDALDRGGFQRCTPVQAAAIPHLLSHKDVAVDAATGSGKTLAFIVPVV 79

Query: 61  TILEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEA 114
            IL   R R   P++     LI+ PTREL++Q+ +  + +    N ++  LL+GG+  +A
Sbjct: 80  EIL---RRRSSPPKSHEVLALIISPTRELSSQIFNVAQPFFATLNGVSSMLLVGGLDIKA 136

Query: 115 QNKKLER-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           + KK+E  GA++L+ TPG++ D  +   L   N+EIL++DEADR+LDMGF  +I  I S+
Sbjct: 137 ELKKVEEEGANILVGTPGKLFDIMHTDALEYKNLEILILDEADRLLDMGFQKHINFILSM 196

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT---------------PSSTAETIE 218
           +P  R+T LFSAT T  +  +S+  L+NP R+EV T               PS T   + 
Sbjct: 197 LPKLRRTGLFSATQTKAVADLSKAGLRNPIRVEVKTEAKSTSKDAGQQELGPSITPLGLR 256

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC-----NQKKNVVNLCHSLEKQGFSVC 273
             ++   A  SKK + L   L      K  + F      +    V+ L +SL  +G  + 
Sbjct: 257 LEYMLCEA--SKKSSQLVDFLVQNSGKKIMVYFATCACVDYWAVVLPLINSL--KGSPII 312

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
           A HG + Q  R K L++F   +  ++V +D+AARGLDIP V  +  +D P     +IHR 
Sbjct: 313 AYHGKMKQSLREKALASFSALSSGVLVCTDVAARGLDIPSVDLIVQYDPPQDPNVFIHRA 372

Query: 334 GRTGRAGRHGKAFT-LVAKED 353
           GRT R  + G A   L+ KED
Sbjct: 373 GRTARYDQEGDAIVFLLPKED 393


>gi|83953300|ref|ZP_00962022.1| dead-box protein, ATP-independent RNA helicase [Sulfitobacter sp.
           NAS-14.1]
 gi|83842268|gb|EAP81436.1| dead-box protein, ATP-independent RNA helicase [Sulfitobacter sp.
           NAS-14.1]
          Length = 731

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 127/403 (31%), Positives = 213/403 (52%), Gaps = 18/403 (4%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF---VLPMLTILEKGRA 68
           +  A+   GY   TP+Q       L   D+   AQTG+GKT +F   + P L   ++   
Sbjct: 5   IADALATQGYDSLTPVQEAVTNPDLVEADLLVSAQTGSGKTVAFGLAIAPTLLGDDEKFG 64

Query: 69  RVRMPRTLILEPTRELAAQVADNFEK-YGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
               P  LI+ PTRELA QV+      YGK     V   +GG+    + + L+RGA +++
Sbjct: 65  HAGAPLALIIAPTRELAMQVSRELTWLYGK-AGAVVTTCVGGMDTRTERRALDRGAHIVV 123

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+ DH  R  + +++I  +V+DEAD MLD+GF   ++ I S  P  R+TLLFSAT+
Sbjct: 124 ATPGRLCDHIKRNNINLSDIRAVVLDEADEMLDLGFREELEFILSEAPEERRTLLFSATV 183

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
              + K+++++ ++ +R+E          IE+  +  + + ++  A++  L   +   KN
Sbjct: 184 PAAIAKLAKSYQRDAQRVETVGEKKQHADIEYRALNVHPRDTEN-AIINVLRFYE--AKN 240

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            I+FCN +  V  L      +GFSV A+ G + Q  R   L   ++G  ++ +A+D+AAR
Sbjct: 241 AIVFCNTRAAVARLTTRFTNRGFSVVALSGELTQSERTNALQALRDGRARVCIATDVAAR 300

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           G+D+P++  V + D+P+ ++  +HR GRTGRAGR G +  +V  +     + +    + K
Sbjct: 301 GIDLPNLELVVHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPAKMRSKANRLLGGAKLK 360

Query: 368 VDWLNGDLSSLNPPLEKIDIAQHNH----ARKNNPIPQKSTGF 406
           V+W N       P  E+++          +  ++PIP  + GF
Sbjct: 361 VEWAN------PPSAEEVNAEDEKRLLADSAWSDPIPDDAAGF 397


>gi|242034035|ref|XP_002464412.1| hypothetical protein SORBIDRAFT_01g017760 [Sorghum bicolor]
 gi|241918266|gb|EER91410.1| hypothetical protein SORBIDRAFT_01g017760 [Sorghum bicolor]
          Length = 507

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 196/361 (54%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 134 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 193

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  +++   +IL PTRELA Q +   ++ GK  N+ V +  GG   +    +L +
Sbjct: 194 KIDPEKTAIQV---VILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQ 250

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P ++ +   +P +RQ L
Sbjct: 251 PVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLLAPEFQPSVEALIHFLPPSRQLL 310

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +++  E +L  P  I +    +     ++     + +  +K   L  L  S
Sbjct: 311 MFSATFPVTVKEFKEKYLPRPYVINLMDELTLKGITQY---YAFVEERQKVHCLNTLF-S 366

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 367 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 426

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 427 TDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRYGHLGLAVNLITYEDRFNLYRIE 486

Query: 362 K 362
           +
Sbjct: 487 Q 487


>gi|261337257|ref|ZP_05965141.1| ATP-dependent RNA helicase [Bifidobacterium gallicum DSM 20093]
 gi|270277617|gb|EFA23471.1| ATP-dependent RNA helicase [Bifidobacterium gallicum DSM 20093]
          Length = 662

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 126/390 (32%), Positives = 201/390 (51%), Gaps = 39/390 (10%)

Query: 3   FADLGLSPKVVCAVLDAG-YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA+LG+ P  +  VL+A       PIQ  T+P  L   DV G  +TG+GKT +F +P++ 
Sbjct: 29  FAELGV-PGPLVRVLNADDKTTAFPIQRDTLPDSLSGRDVLGRGRTGSGKTLAFSIPLVA 87

Query: 62  IL------------------------EKGRAR------VRMPRTLILEPTRELAAQVADN 91
            L                        ++ RA       V  PR L+L PTRELA Q+ D 
Sbjct: 88  RLGEVDGSFGAEDSMAEFRKAVKQVQKRHRAERMEAGFVPHPRGLVLAPTRELANQINDV 147

Query: 92  FEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILV 151
            E     Y ++   + GG+ +  Q   L+ GAD+++  PGR+ D   +G L ++ ++I++
Sbjct: 148 LEPLANIYGISTTTVYGGVRYSRQIGDLKAGADIVVACPGRLEDLLEQGALTLDAVQIVI 207

Query: 152 IDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           IDEAD M DMGF+P I+ + S +    Q +LFSAT+   +  V   FL +P    V+  +
Sbjct: 208 IDEADEMADMGFLPPIKRLLSQIRPNAQHMLFSATLDHGVDAVVNEFLHDPIVHSVDEAN 267

Query: 212 STAETI-EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
           +  +++  H FV +    S K  L++ L          I+F   K     L  SL +QG 
Sbjct: 268 AHVDSMTHHVFVIS---RSDKPELVRALASGTGRR---ILFTRTKFQAKKLAKSLTQQGI 321

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
               +HGN+ Q  R + L+ F++G + ++VA+D+AARG+D+  V  V   D P   + ++
Sbjct: 322 PAAELHGNLSQNQRDRNLAAFEQGNVNVLVATDVAARGIDVSGVDLVVQVDPPEDPKAFL 381

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           HR GRT RAGR G   T++  +  +++ ++
Sbjct: 382 HRSGRTARAGREGDVITIMTPDQRRYVKSL 411


>gi|326499824|dbj|BAJ90747.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 518

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 118/361 (32%), Positives = 198/361 (54%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 145 EFEDYFLKRELLMGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 204

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++ R  +++   +I+ PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 205 KIDQDRNAIQV---VIVVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRLYQ 261

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P I+ +   +P +RQ L
Sbjct: 262 PVHLLVGTPGRILDLTKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIRYLPASRQIL 321

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +++  + +L  P  I +     T + I   +   + +  +K   L  L  S
Sbjct: 322 MFSATFPVTVKEFKDKYLPKPYVINL-MDELTLKGITQFYA--FVEERQKVHCLNTLF-S 377

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 378 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 437

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 438 TDLFTRGIDIQAVNVVINFDFPKSSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 497

Query: 362 K 362
           +
Sbjct: 498 Q 498


>gi|322374632|ref|ZP_08049146.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C300]
 gi|321280132|gb|EFX57171.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C300]
          Length = 447

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 194/367 (52%), Gaps = 11/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +V A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKKFQFKNYIVEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   + ++ V ++  +GG     Q +K
Sbjct: 61  QQLDETSDSVQ---AVITAPSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L ++  +  VIDEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVIDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQ 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +  + +   L 
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQLT 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           QL+Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K    
Sbjct: 238 QLMQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDF 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   
Sbjct: 294 EYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSD 353

Query: 357 IDAIEKL 363
           I  +EKL
Sbjct: 354 IRELEKL 360


>gi|66810125|ref|XP_638786.1| hypothetical protein DDB_G0284017 [Dictyostelium discoideum AX4]
 gi|74897069|sp|Q54Q94|DDX10_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx10; AltName:
           Full=DEAD box protein 10
 gi|60467406|gb|EAL65432.1| hypothetical protein DDB_G0284017 [Dictyostelium discoideum AX4]
          Length = 878

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 125/359 (34%), Positives = 198/359 (55%), Gaps = 20/359 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF DL +S   + A+ ++ ++K T IQ  ++P  L   D+ G A+TG+GKT SF+LP+L 
Sbjct: 142 DFKDLPISQLTLKALTESKFLKLTDIQRASLPHTLCGRDILGAAKTGSGKTLSFILPILE 201

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L + R  R      ++L PTRELA Q+ D  +  GK +  +  L+IGG   + +  K+ 
Sbjct: 202 TLWRNRWGRDDGIGAIVLSPTRELAIQIFDVLKAVGKYHTFSAGLIIGGRNVQQEKDKI- 260

Query: 121 RGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              ++LI TPGR+L H +       +N++ILV+DEADR+LD+GF   + +I   +P  RQ
Sbjct: 261 NAMNILIATPGRLLQHMDETYGFDCSNLKILVLDEADRILDLGFSKCLNSIVENLPRERQ 320

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEV------NTPSSTAETIEHCFVATYAQYSKKCA 233
           TLLFSAT T  ++ ++   LQ P+ I V       TP +  +T+  C +        K  
Sbjct: 321 TLLFSATQTKSIRDLARLSLQEPEYISVYEKDITTTPQNLTQTL--CVIP----LEMKLN 374

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHS---LEKQGFSVCAIHGNIDQRSRMKILSN 290
           +L   +++  T K  + F + K+  V   H    L   G ++  +HG + Q +R+++  +
Sbjct: 375 MLFSFIKTHLTSKIIVFFASCKQ--VRFAHETFKLLNPGTTLFPLHGKMKQWTRLEVFED 432

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           F +     + A+D+AARGLD P V  V   D P+  E YIHR+GRT R    G++ T++
Sbjct: 433 FCKKKAGTLFATDIAARGLDFPAVEWVIQVDCPDDIETYIHRVGRTARNDAPGQSITIL 491


>gi|302784512|ref|XP_002974028.1| hypothetical protein SELMODRAFT_874 [Selaginella moellendorffii]
 gi|300158360|gb|EFJ24983.1| hypothetical protein SELMODRAFT_874 [Selaginella moellendorffii]
          Length = 457

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 126/364 (34%), Positives = 189/364 (51%), Gaps = 5/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS   +  + DA YV  T IQ   +P  L   D+ G A+TG+GKT +F++P++  
Sbjct: 3   FQQLPLSQLTLDGLRDAKYVTMTDIQRAALPHALCGRDILGAAKTGSGKTLAFLIPVIEK 62

Query: 63  LEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + R   +     LI+ PTRELA Q+ D   K GK ++L+  LLIGG    +  K+   
Sbjct: 63  LYRLRWTSMDGVGALIISPTRELAMQIFDELRKVGKFHDLSGGLLIGGRKDVSTEKQSVN 122

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           G ++L+CTPGR+L H +       + +++LV+DEADR+LDMGF   +  I + +P  RQT
Sbjct: 123 GLNILVCTPGRLLQHMHETVNFDCSPLKLLVLDEADRILDMGFAGTLNQIIAQIPKERQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT T  +Q ++   LQ+P+ + V+  S+ A               +K   L   ++
Sbjct: 183 FLFSATQTRSVQDLARLSLQSPEYLAVHAESAVATPARLQQTVMVVPLDQKIDTLWSFIK 242

Query: 241 SQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           S    K  +    C Q K V      L + G  +  +HG + Q  R+     F E    +
Sbjct: 243 SHLRAKVLVFLSSCKQVKFVYEAFKHL-RPGVPLTCLHGRLRQGGRLDAFYKFVEAEYAV 301

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M A+D+AARGLD P V  V   D P     YIHR+GRT R    G++  L++  + K + 
Sbjct: 302 MFATDIAARGLDFPTVDWVVQADCPEDVATYIHRVGRTARYKASGRSLLLLSPSETKMVA 361

Query: 359 AIEK 362
            +E+
Sbjct: 362 LLEE 365


>gi|115730751|ref|XP_786504.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21a
           [Strongylocentrotus purpuratus]
 gi|115943987|ref|XP_001179633.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21a
           [Strongylocentrotus purpuratus]
          Length = 657

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 204/371 (54%), Gaps = 18/371 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++ G+ PK +  +   G     PIQ +T   +    DV   A+TGTGKT SFVLP++  
Sbjct: 104 FSNFGIRPKTIEKLHAKGVKYLFPIQAQTFKPIDDGFDVIAQARTGTGKTLSFVLPLVEK 163

Query: 63  LEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +   R P  L L PTRELA Q+++ FE  G +  L+   + GG  +  Q   + R
Sbjct: 164 WQQFPQKSGRQPIILALAPTRELAKQISEYFEAIGPH--LSTTCIYGGTSYWPQESAIRR 221

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI------TSLVP 175
           G DV++ TPGRILD+  +  L ++ ++ +V+DE DRMLDMGF   ++ I      T   P
Sbjct: 222 GLDVVVGTPGRILDYIRKNTLDLSKLKHVVLDEVDRMLDMGFAESVEEILGAAYKTEEAP 281

Query: 176 FTRQTLLFSATMTDELQKVSENFL-QNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKC 232
              QTLLFSAT+   + + +  ++ ++ K++++       TA T++H  +A    Y  + 
Sbjct: 282 NNPQTLLFSATVPPWVYQTAVKYMRKDLKKVDLVGRDRMKTATTVQH--LAINCSYFDRP 339

Query: 233 ALLQQLLQSQDTMKN-GIIFCNQKKNVVNLCHSLE-KQGFSVCAIHGNIDQRSRMKILSN 290
            ++  +++    +    ++FC  K++   L  S + KQ   V  +HG+I Q  R   L  
Sbjct: 340 QVISDVIKVYGGLDGRCMVFCETKRDANELAMSSDVKQETQV--MHGDIPQTQREVTLKG 397

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG  Q +V +D+AARGLDIP+V  V   + P   ++YIHR GRTGRAGR+G       
Sbjct: 398 FREGKFQCLVTTDVAARGLDIPEVDLVIQCNPPRDVDSYIHRSGRTGRAGRNGVCVCFYK 457

Query: 351 KEDIKHIDAIE 361
           +++ + +  +E
Sbjct: 458 RQEERDLQKVE 468


>gi|281208736|gb|EFA82911.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 698

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 140/411 (34%), Positives = 226/411 (54%), Gaps = 25/411 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F  L +  K   A+ +  + K TPIQ KTI  +L+  D+ G A+TG+GKT +F++P +
Sbjct: 194 IEFNSLPIEEKTKKAIAEMKFTKMTPIQAKTIMPLLEGRDLLGAARTGSGKTLAFLIPAI 253

Query: 61  TILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKK 118
            IL K   + R     +I+ PTRELA Q+     +   N+  T  L+IGG     A+ ++
Sbjct: 254 EILVKANFKPRNGTGVIIISPTRELALQIYGVARELMLNHTQTHGLVIGGNNDKRAEIER 313

Query: 119 LERGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           LE+G ++L+CTPGR+LDH  N    ++ N++ LVIDEADR+L++GF   +  I  L+P  
Sbjct: 314 LEKGVNLLVCTPGRLLDHLQNTRGFIVKNLKCLVIDEADRILEVGFEEDMHQIVKLLPKE 373

Query: 178 RQTLLFSATMT---DELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKC 232
           RQT+LFSAT T   D++ +VS  F + P  + V+     ST E +E  +V   ++  K+ 
Sbjct: 374 RQTMLFSATQTRKVDDIARVS--FNKEPVYVGVDDDREVSTVEGLEQGYVVCPSE--KRF 429

Query: 233 ALLQQLLQSQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            LL   L+ ++  K  I+F   CN  K    L + +   G  V   HG   Q+ R     
Sbjct: 430 LLLYTFLK-KNLNKKVIVFLSSCNSVKYHAELLNFI---GIPVLEFHGKQKQQKRTNTFY 485

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTL 348
            F      +++ +D+AARG+DIP V  +  FD P+  + YIHR+GRT R  G+ G+A   
Sbjct: 486 EFVNAEKGILICTDVAARGVDIPSVDWIIQFDPPDDPKEYIHRVGRTARGVGKKGRALLF 545

Query: 349 VAKEDIKHIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI---DIAQHNHAR 394
           +  +++  +  ++  K+   + ++    +S++   LEK+   +   HN AR
Sbjct: 546 LLPQELTFLKYLKLAKVPLNEYEFPQKKVSNVQDQLEKLVANNYYLHNSAR 596


>gi|261378955|ref|ZP_05983528.1| ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC 14685]
 gi|269144656|gb|EEZ71074.1| ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC 14685]
          Length = 339

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 110/309 (35%), Positives = 189/309 (61%), Gaps = 16/309 (5%)

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q   L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I 
Sbjct: 1   MDKQTADLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIM 60

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            ++P  RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +K
Sbjct: 61  QMLPKQRQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTIQK 118

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL++L+     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ F
Sbjct: 119 RNLLERLIVDLH-MPQVIVFCKTKQSVDQVTRDLIRRNLSAQAIHGDRSQQSRLETLNAF 177

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K+G+++++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ +
Sbjct: 178 KDGSLRVLVATDIAARGLDIAELPFVINYEMPTQPEDYVHRIGRTGRAGADGVAISLMDE 237

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            + K  +AI++L   K+             +E+I+  +     +    P+K+   + R++
Sbjct: 238 SEQKMFEAIKELTGNKL------------LIERIEGFEPRWWEQEGSKPEKTETSEPRQR 285

Query: 412 N-YSSQKSH 419
           N Y S K+ 
Sbjct: 286 NRYESAKAQ 294


>gi|189194769|ref|XP_001933723.1| ATP-dependent RNA helicase DHH1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187979287|gb|EDU45913.1| ATP-dependent RNA helicase DHH1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 512

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 122/364 (33%), Positives = 193/364 (53%), Gaps = 11/364 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 49  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 108

Query: 61  TILEKGRARVRMPRT--LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 R   + P+T  LIL PTRELA Q +   ++ GK+ N+ V +  GG   +    +
Sbjct: 109 E-----RVNPKSPKTQALILVPTRELALQTSQVCKQLGKHLNINVMVSTGGTGLKDDIIR 163

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L     +++ TPGRILD   +G   ++  +  V+DEAD++L   F P ++ +    P  R
Sbjct: 164 LSDPVHIIVGTPGRILDLAGKGVADLSACQTFVMDEADKLLSPEFTPVVEQLLGFHPKDR 223

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT    ++   +  + +P  I +     T   I   +   + +  +K   L  L
Sbjct: 224 QVMLFSATFPIVVKSFKDKHMNSPYEINL-MDELTLRGITQYYA--FVEEKQKVHCLNTL 280

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             ++  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + 
Sbjct: 281 F-NKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRN 339

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++ 
Sbjct: 340 LVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLY 399

Query: 359 AIEK 362
            IE+
Sbjct: 400 RIEQ 403


>gi|50307015|ref|XP_453485.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74606431|sp|Q6CRF4|DBP4_KLULA RecName: Full=ATP-dependent RNA helicase DBP4
 gi|49642619|emb|CAH00581.1| KLLA0D09504p [Kluyveromyces lactis]
          Length = 770

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 121/361 (33%), Positives = 200/361 (55%), Gaps = 14/361 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +S + +  + +A ++K T IQ ++IPL L+ HDV G A+TG+GKT +F++P++  
Sbjct: 43  FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102

Query: 63  LEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +   +     LI+ PTRELA Q+ +   K GK+   +  L+IGG     + +++ R
Sbjct: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR 162

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++LI TPGRIL H ++      +N+++LV+DEADR LDMGF   +  I + +P +RQT
Sbjct: 163 -INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQT 221

Query: 181 LLFSATMTDELQKVSENFLQNPKRI------EVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           LLFSAT +  L  ++   L + K++        N+ S+T E+++  ++        K  +
Sbjct: 222 LLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEV--PLPDKLDI 279

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK--QGFSVCAIHGNIDQRSRMKILSNFK 292
           L   ++S    K  I+F +  K V  +  +  K   G S+  +HG   Q +R + L  F 
Sbjct: 280 LFSFIKSHLKSK-LIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFS 338

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                 + ++D+ ARG+D P V  V   D P   + YIHR+GR  R G+ GK+  ++  E
Sbjct: 339 RAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPE 398

Query: 353 D 353
           +
Sbjct: 399 E 399


>gi|195473739|ref|XP_002089150.1| eIF-4a [Drosophila yakuba]
 gi|194175251|gb|EDW88862.1| eIF-4a [Drosophila yakuba]
          Length = 415

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 205/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F    + 
Sbjct: 43  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATF---SIA 99

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    +R  + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 100 ILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 159

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 160 GCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 219

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F++ P  I V     T E I+  F     Q + K   L  L  +
Sbjct: 220 LLSATMPPDVLEVSRCFMREPVSILVKKEELTLEGIKQ-FYVNVKQENWKLGTLCDLYDT 278

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 279 L-SITQSVIFCNTRRKVDQLTQEMSLHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 337

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  +D + +  IE
Sbjct: 338 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIE 397

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 398 QFYHTTIEEMPANIADL 414


>gi|168015062|ref|XP_001760070.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688820|gb|EDQ75195.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 657

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 123/324 (37%), Positives = 176/324 (54%), Gaps = 16/324 (4%)

Query: 50  GKTASFVLPMLTILE-----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA 104
           GKT +FVLP+L  L      K   R R P  ++L PTRELA QV  +FE YG    L+  
Sbjct: 130 GKTLAFVLPVLESLSQSGYTKSLGRGRAPAVIVLAPTRELAKQVHADFETYGNAVGLSTV 189

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
            + GG P+  Q   L RG D+++ TPGRI DH  RG L + +++  ++DEAD ML+MGF+
Sbjct: 190 CVYGGAPYGPQENALRRGVDIVVGTPGRIKDHLERGGLNLKSLKFRILDEADEMLNMGFV 249

Query: 165 PYIQNITSLV--PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS----TAETIE 218
             ++ I   V  P   QTLLFSAT+   +Q+++  FL+ P+R  V+         +  ++
Sbjct: 250 DDVEKILGGVDDPSKVQTLLFSATLPTWVQQIARKFLK-PERRTVDLVGDEKMKASNNVK 308

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
           H  +     YS +  L+Q ++Q   +    I+F   K +   L   L K G +  A+HG+
Sbjct: 309 HLLLP--GHYSMRTQLVQDVIQCYGSGGRIIVFTETKNDASELAGVL-KSG-TARALHGD 364

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
           I Q  R   L  F+     ++VA+D+AARGLDI DV  V   + P  AE YIHR GRTGR
Sbjct: 365 IPQNQREVTLQGFRTSKFSVLVATDVAARGLDINDVQLVIQCEPPRDAETYIHRSGRTGR 424

Query: 339 AGRHGKAFTLVAKEDIKHIDAIEK 362
           AG  G +     ++    I  IE+
Sbjct: 425 AGNTGISVLFYDRKKEYMIPQIER 448


>gi|296411733|ref|XP_002835584.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629370|emb|CAZ79741.1| unnamed protein product [Tuber melanosporum]
          Length = 388

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 118/379 (31%), Positives = 198/379 (52%), Gaps = 22/379 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L +
Sbjct: 27  FEAMHLKEGLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQV 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 87  IDTA---VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P + Q ++
Sbjct: 144 QHVVSGTPGRVADMIRRRNLRTKHIKMLVLDEADELLNRGFREQIYDVYRYLPPSTQVVV 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +   +   C L   L 
Sbjct: 204 VSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTL- 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN ++ V  L   + +  F+V A+HG + Q+ R  I+  F++G  +++
Sbjct: 263 ----TITQAVIFCNTRRKVDWLTEKMREANFTVSAMHGEMPQKERDAIMQEFRQGNSRVL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V           + NYIHRIGR+GR GR G A   V  ED++ +  
Sbjct: 319 ISTDVWARGIDVQQV-----------SLNYIHRIGRSGRFGRKGVAINFVTSEDVRILRD 367

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE     ++D +  ++S L
Sbjct: 368 IELFYSTQIDEMPMNVSDL 386


>gi|294893294|ref|XP_002774400.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239879793|gb|EER06216.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 535

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 188/344 (54%), Gaps = 19/344 (5%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL------EKGRARVRMP 73
           G  +P+ IQ++  P+     D+ G+A+TG+GKT ++++P +  +      E+G      P
Sbjct: 178 GRGRPSAIQMQGWPVASSGRDLVGVAETGSGKTLAYLMPAIVHIAAQPEVEQGDG----P 233

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
             L+L PTREL+ QV +  E       + +A + GG P   Q ++L    ++L+ TPGR+
Sbjct: 234 VALVLVPTRELSQQVVEGDE------GVKIACVYGGQPKRQQERELWTAPELLVATPGRL 287

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193
           +D    G   +  +  LVIDEAD ML +GF   + +I S +   RQTL++SAT   E+Q 
Sbjct: 288 IDFLQNGATNLKRVTYLVIDEADEMLALGFGRQLDSICSAIRPDRQTLMWSATWPREIQD 347

Query: 194 VSENFLQN-PKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           ++    +  P  I + +  S A   +        +     A++  +L+S    K  +IFC
Sbjct: 348 LARKHCREMPVHINIGS-QSLAACHQVRGEGVIGRSRLGVAVVWNVLESNGEAK-ALIFC 405

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
           N K+ V  L   L  QG++   IH + +Q  R  + + +++G ++L+VA++L  RG+DI 
Sbjct: 406 NTKREVDQLTQLLRSQGYNAVCIHSDKEQSEREWVFAQYRDGDVRLLVATNLMGRGVDIK 465

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++  V N+D+P   E Y+HRIGRT RAG HG + TL   ++ +H
Sbjct: 466 NIQFVINYDMPQNVEEYVHRIGRTARAGAHGTSITLFTAQEGRH 509


>gi|302496500|ref|XP_003010251.1| hypothetical protein ARB_03506 [Arthroderma benhamiae CBS 112371]
 gi|291173793|gb|EFE29611.1| hypothetical protein ARB_03506 [Arthroderma benhamiae CBS 112371]
          Length = 449

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 131/421 (31%), Positives = 206/421 (48%), Gaps = 29/421 (6%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
            + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L   E+   ++   +
Sbjct: 2   GIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL---ERTNPKIAKTQ 58

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            LIL PTRELA Q +   +  GK+  + V +  GG   +    +L     +++ TPGRIL
Sbjct: 59  ALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLNDTVHIIVGTPGRIL 118

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D  ++G   ++     V+DEAD++L   F P I+ + +  P  RQ +LFSAT    ++  
Sbjct: 119 DLASKGVADLSECTTFVMDEADKLLSPEFTPVIEQLLTFHPKDRQVMLFSATFPIIVKTF 178

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
            +  ++NP  I +     T   I   +   + +  +K   L  L  S+  +   IIFCN 
Sbjct: 179 KDKHMRNPYEINL-MDELTLRGITQYYA--FVEERQKVHCLNTLF-SKLQINQSIIFCNS 234

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
              V  L   + + G+S    H  + Q +R ++  +F+ G  + +V SDL  RG+DI  V
Sbjct: 235 TNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAV 294

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
             V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  IE+ +  ++  +   
Sbjct: 295 NVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRYNLYKIEQELGTEIQPIPPS 354

Query: 375 LS----------------SLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           +                 S NP  E+    Q +  R+    P    G       YSS + 
Sbjct: 355 IDKKLYVYETPNTIPRPISNNPSEEQKSAGQESQPRRQTTNPSNGHG------QYSSNRG 408

Query: 419 H 419
           H
Sbjct: 409 H 409


>gi|24378946|ref|NP_720901.1| putative ATP-dependent RNA helicase [Streptococcus mutans UA159]
 gi|24376832|gb|AAN58207.1|AE014891_11 putative ATP-dependent RNA helicase [Streptococcus mutans UA159]
          Length = 447

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 197/368 (53%), Gaps = 13/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ +  +  PT +Q + IPL+L   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MLFTDFKFKNYINNALANLHFEGPTEVQERLIPLILSGKDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKK 118
             LE+    V+    +I  P+RELA Q+ +  ++  +    N+ +A  IGG     Q +K
Sbjct: 61  EKLEEDSLDVQ---AVITAPSRELARQIYEAAKQIAQFSEQNIRLANYIGGTDKLRQVEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+     ++I TPGRI D    G L ++     V+DEAD  LD+GF+  +  I + +P  
Sbjct: 118 LKATQPQIMIGTPGRIYDLVKSGHLDIHKAHTFVVDEADMTLDLGFLDTVDKIAASLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L +P   ++ T +  A+TI +  ++T  +        QQ
Sbjct: 178 IQLLVFSATIPQKLQPFLKKYLNHPIIEKIKTSTVIADTISNWLISTKGRDKN-----QQ 232

Query: 238 LLQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +L+   ++K    IIF N K  V +L   L   GF    IHG I  R R +I++  K+  
Sbjct: 233 ILEIVKSLKPYLAIIFANTKDRVDDLHAFLSANGFKTAKIHGGIPPRERKRIMNQVKQLD 292

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            + +VA+DLAARGLDI  V HV N  +P     ++HR+GRTGR G  G A TL    D  
Sbjct: 293 FEYIVATDLAARGLDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDS 352

Query: 356 HIDAIEKL 363
            I  +EKL
Sbjct: 353 DIRELEKL 360


>gi|167535963|ref|XP_001749654.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771802|gb|EDQ85463.1| predicted protein [Monosiga brevicollis MX1]
          Length = 400

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 123/361 (34%), Positives = 190/361 (52%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D GL  +++  + + G+  P+P+Q + IP  L R D+   A+ GTGKT ++++P L 
Sbjct: 16  EFEDFGLKRELLLGIFEKGFENPSPVQEECIPNALMRRDILARAKNGTGKTGAYLIPTLQ 75

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++   A ++    LIL PTRELA Q A   ++ GK+ NL +    GG        +L +
Sbjct: 76  LVDPALACIQ---ALILVPTRELALQTASIAKELGKHLNLEIMTTTGGTNTRDDILRLGQ 132

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ T GRILD   RG   M    ILV DEAD++L    +  +Q I S +P  RQT+
Sbjct: 133 TVHVVVATGGRILDLIERGVAQMARCNILVFDEADKLLSEDSLDTVQKIISHLPEKRQTM 192

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT    +Q  ++ +L+NP  I +   + T + +   +   + +   K   L  L   
Sbjct: 193 LLSATYPVAVQGFTKRYLKNPHVINL-METLTLKGVTQFYA--FLEEKDKVRCLNTLF-G 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFC+    V  L   + K G+S   IH  ++Q  R  +   F++G  + +V 
Sbjct: 249 KLQINQSIIFCSSHSRVELLAKKITKLGYSCLYIHSRMEQSHRNTVFDAFRKGKSRHLVC 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  LV   + + +  IE
Sbjct: 309 TDLFTRGIDIQAVNVVVNFDFPREAETYLHRIGRSGRYGHLGLAINLVTAGNREALLRIE 368

Query: 362 K 362
           +
Sbjct: 369 R 369


>gi|195116347|ref|XP_002002717.1| GI17537 [Drosophila mojavensis]
 gi|193913292|gb|EDW12159.1| GI17537 [Drosophila mojavensis]
          Length = 389

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 205/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F    + 
Sbjct: 17  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATF---SIA 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    +R  + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 74  ILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 134 GCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F++ P  I V     T E I+  F     Q + K   L  L  +
Sbjct: 194 LLSATMPPDVLEVSRCFMREPVSILVKKEELTLEGIKQ-FYVNVKQENWKLGTLCDLYDT 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 253 L-SITQSVIFCNTRRKVDQLTQEMTSHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  +D + +  IE
Sbjct: 312 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIE 371

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 372 QFYHTTIEEMPANIADL 388


>gi|149239594|ref|XP_001525673.1| hypothetical protein LELG_03601 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451166|gb|EDK45422.1| hypothetical protein LELG_03601 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 461

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 115/319 (36%), Positives = 182/319 (57%), Gaps = 10/319 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           + KPTPIQ  + P +L   DV G+A+TG+GKT +F +P +  +   + +      L + P
Sbjct: 146 FPKPTPIQSVSWPFLLDGKDVVGVAETGSGKTFAFGVPAINNIITSKNKDL--SVLCISP 203

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TRELA Q+ DN E   +  +++   + GG+  + Q KK+  GA+V++ TPGR++D  N G
Sbjct: 204 TRELALQIYDNLEDLTRGTDVSCVAIYGGVSKDDQIKKIRNGANVVVATPGRLVDLINDG 263

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQTLLFSATMTDELQKVSENFL 199
            + +++I  LV+DEADRML+ GF   I+ I    P   RQTL+F+AT   E+++++ NF+
Sbjct: 264 AVDLSSINYLVLDEADRMLEKGFEEDIKLIIGSTPAQGRQTLMFTATWPKEVRELANNFM 323

Query: 200 QNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG----IIFCN 253
             P ++ +      S  + I         ++ K+  L+  LLQ      NG    ++F  
Sbjct: 324 NQPVKVTIGDRDELSANKRITQIVEVLDDKFQKEKKLI-NLLQKYQNTGNGDNKILVFAL 382

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            KK    +   L +  F V AIHG++ Q+ R + L +FK G   L++A+D+AARGLDIP+
Sbjct: 383 YKKEASRIESLLHRNKFKVAAIHGDLSQQQRTQALQSFKSGECNLLLATDVAARGLDIPN 442

Query: 314 VGHVFNFDVPNRAENYIHR 332
           V +V N   P   E+Y+HR
Sbjct: 443 VKYVINLTFPLTIEDYVHR 461


>gi|240275036|gb|EER38551.1| ATP-dependent RNA helicase DBP4 [Ajellomyces capsulatus H143]
          Length = 811

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 128/392 (32%), Positives = 212/392 (54%), Gaps = 26/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL LS      +    +   T IQ + IP  L+  D+ G A+TG+GKT +F++P+L +
Sbjct: 51  FSDLPLSEPTADGLSACHFKSLTDIQARAIPYALKGRDILGAAKTGSGKTLAFLVPLLEL 110

Query: 63  L-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  K          L+L PTRELA Q+ +   K G+++  +  L+IGG   + + ++L +
Sbjct: 111 LYRKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHTFSAGLVIGGKGLQEEQERLGK 170

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++      N+I++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 171 -MNILVCTPGRMLQHMDQTAAFDTNHIQLLVLDEADRIMDMGFQSTVDAIIDHLPKERQT 229

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVN--TPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +LFSAT T ++  ++   L++P+ + V+    S+T   ++  ++ T     +K   L   
Sbjct: 230 MLFSATQTKKVSDLARLSLRDPEYVSVHETAASATPAKLQQNYIIT--PLPEKLDTLWSF 287

Query: 239 LQSQDTMKNGII-FCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++S  ++K+ II F +  K V  +  S    + G  +  +HG   Q +R+ I   F    
Sbjct: 288 IRS--SLKSKIIVFFSSGKQVRFVYESFRHMRPGIPLLHLHGRQKQGARVDITKKFSAAK 345

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
              + A+D+AARGLD P V  V   D P  A+ YIHR GRT R  R+G+A   +  E  +
Sbjct: 346 YACLFATDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFL--EPSE 403

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
               +++L +KK+            P+EKI++
Sbjct: 404 EAGMLKRLEQKKI------------PIEKINV 423


>gi|167391022|ref|XP_001733479.1| ATP-dependent RNA helicase DDX3X [Entamoeba dispar SAW760]
 gi|165896682|gb|EDR24029.1| ATP-dependent RNA helicase DDX3X, putative [Entamoeba dispar
           SAW760]
          Length = 392

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 120/320 (37%), Positives = 179/320 (55%), Gaps = 11/320 (3%)

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
            P  LIL PTREL  Q+ +   K+ +N  +    + GG     Q +++ +G D+L+ T G
Sbjct: 14  FPVALILAPTRELGQQIYEEAVKFTENTPIRSVCVYGGSDAYIQIQEMGKGCDILVATTG 73

Query: 132 RILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNI---TSLVPF-TRQTLLFSAT 186
           R+L +F   K++ ++++  L+ DEADRMLDMGF P I+ I     + P   RQTL+FSAT
Sbjct: 74  RLL-YFTEKKIVSLSSVRYLIFDEADRMLDMGFEPQIREICEDNEMPPVGKRQTLMFSAT 132

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
              ++Q+++ +FL N   I V    ST E+I+   +    Q  K+ A+L  L +     +
Sbjct: 133 FPKQIQRLAADFLDNYVFITVGRAGSTVESIQQIILWVEEQI-KQEAILDVLREFAGKGE 191

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             +IF   KK    L + L   G+ V +IHG+  Q  R   L  FKE  IQL+VA+D+A+
Sbjct: 192 KTVIFVETKKGADMLENYLYDHGYKVDSIHGDRSQADRDFSLKRFKENVIQLLVATDVAS 251

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDIPD+  V N+D+PN  E+Y+HR+GRTGRAG+ G A T +  +    I ++  L+E+
Sbjct: 252 RGLDIPDIEVVINYDMPNEIESYVHRVGRTGRAGKKGTAITFINDKTQNLIPSLVSLLEE 311

Query: 367 KV----DWLNGDLSSLNPPL 382
                 DWL         P 
Sbjct: 312 AKQEIPDWLEEKAQEYRKPF 331


>gi|331266730|ref|YP_004326360.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus oralis Uo5]
 gi|326683402|emb|CBZ01020.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus oralis Uo5]
          Length = 447

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 194/367 (52%), Gaps = 11/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +V A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKKFQFKNYIVEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   + ++ V ++  +GG     Q +K
Sbjct: 61  QQLDETSDSVQ---AVITAPSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L ++  +  VIDEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVIDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQ 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +  + +   L 
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQLT 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           QL+Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K    
Sbjct: 238 QLMQPYLAM----IFVNTKTRADELHAYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDF 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   
Sbjct: 294 EYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSD 353

Query: 357 IDAIEKL 363
           I  +EKL
Sbjct: 354 IRELEKL 360


>gi|310800761|gb|EFQ35654.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 530

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 120/362 (33%), Positives = 191/362 (52%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +  L   ++  + +AG+ +P+PIQ + IP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFENFQLKRDLLMGIFEAGFERPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPAL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK   +V   + LIL PTRELA Q +   +  GK+  + V +  GG        +L+
Sbjct: 107 ---EKINPKVSKIQALILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIIRLQ 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +    ++   + ++DEAD++L + F P I+ +    P  RQ 
Sbjct: 164 DPVHIVVGTPGRILDLAGKNVADLSECSMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQV 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++  S+  + +P  I +     T   I   +   + +  +K   L  L  
Sbjct: 224 MLFSATFPLSVKDFSDKNMVSPYEINL-MDELTLRGITQYY--AFVEEKQKVHCLNTLF- 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q++R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMAQQARNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNI 399

Query: 361 EK 362
           EK
Sbjct: 400 EK 401


>gi|242034037|ref|XP_002464413.1| hypothetical protein SORBIDRAFT_01g017770 [Sorghum bicolor]
 gi|241918267|gb|EER91411.1| hypothetical protein SORBIDRAFT_01g017770 [Sorghum bicolor]
          Length = 507

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 196/361 (54%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 134 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 193

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  +++   +IL PTRELA Q +   ++ GK  N+ V +  GG   +    +L +
Sbjct: 194 KIDPEKTAIQV---VILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQ 250

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P ++ +   +P +RQ L
Sbjct: 251 PVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLLAPEFQPSVEALIHFLPPSRQLL 310

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +++  E +L  P  I +    +     ++     + +  +K   L  L  S
Sbjct: 311 MFSATFPVTVKEFKEKYLPRPYVINLMDELTLKGITQY---YAFVEERQKVHCLNTLF-S 366

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 367 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 426

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 427 TDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRYGHLGLAVNLITYEDRFNLYRIE 486

Query: 362 K 362
           +
Sbjct: 487 Q 487


>gi|126736373|ref|ZP_01752115.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. CCS2]
 gi|126714194|gb|EBA11063.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. CCS2]
          Length = 692

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 118/338 (34%), Positives = 185/338 (54%), Gaps = 6/338 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL---PMLTILEKGRARVR 71
           A+   GY   TP+Q       L   D+   AQTG+GKT  F L   P +   +       
Sbjct: 8   ALAKQGYTDLTPVQEAVTDDALVGQDLLVSAQTGSGKTVGFGLAIGPTILAEDGTFGPAG 67

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
            P  LI+ PTRELA QV    +        T+A  +GG+ F  + + LERGA +++ TPG
Sbjct: 68  RPHALIIAPTRELALQVKRELQWLYAGAGATLASCVGGMDFRDERRSLERGAHIVVATPG 127

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+ DH  RG + +++I+ +V+DEAD MLD+GF   ++ I    P  R+TL+FSAT+   +
Sbjct: 128 RLRDHIMRGTIDLSDIKAVVLDEADEMLDLGFREDLEFILGEAPPERRTLMFSATVPPMI 187

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
             +++++ ++  RI   T       IE+  + + A +    A++  +L+  D   N I+F
Sbjct: 188 ATLAKSYQRDAVRIATATKEKQHSDIEYRAL-SVANHDTDAAII-NVLRYYDA-PNAIVF 244

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
            N +  V  L   L  +GFSV A+ G + Q  R   L   ++G  ++ VA+D+AARG+D+
Sbjct: 245 ANTRAMVTRLTTRLSNRGFSVVALSGELTQSERSNALQAMRDGRAKVCVATDVAARGIDL 304

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           P++  V + ++P  AE  +HR GRTGRAGR G +  +V
Sbjct: 305 PNLELVIHAELPTNAETLLHRSGRTGRAGRKGISAMIV 342


>gi|290581036|ref|YP_003485428.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025]
 gi|254997935|dbj|BAH88536.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025]
          Length = 447

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 197/368 (53%), Gaps = 13/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ +  +  PT +Q + IPL+L   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MLFTDFKFKNYINNALANLHFEGPTEVQERLIPLILSGKDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKK 118
             LE+    V+    +I  P+RELA Q+ +  ++  +    N+ +A  IGG     Q +K
Sbjct: 61  EKLEEDSLDVQ---AVITAPSRELARQIYEAAKQIAQFSEQNIRLANYIGGTDKLRQVEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+     ++I TPGRI D    G L ++     V+DEAD  LD+GF+  +  I + +P  
Sbjct: 118 LKATQPQIVIGTPGRIYDLVKSGHLDIHKAHTFVVDEADMTLDLGFLDTVDKIAASLPKN 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L +P   ++ T +  A+TI +  ++T  +        QQ
Sbjct: 178 IQLLVFSATIPQKLQPFLKKYLNHPIIEKIKTSTVIADTISNWLISTKGRDKN-----QQ 232

Query: 238 LLQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +L+   ++K    IIF N K  V +L   L   GF    IHG I  R R +I++  K+  
Sbjct: 233 ILEIVKSLKPYLAIIFANTKDRVDDLHAFLSANGFKTAKIHGGIPPRERKRIMNQVKQLD 292

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            + +VA+DLAARGLDI  V HV N  +P     ++HR+GRTGR G  G A TL    D  
Sbjct: 293 FEYIVATDLAARGLDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDS 352

Query: 356 HIDAIEKL 363
            I  +EKL
Sbjct: 353 DIRELEKL 360


>gi|164660566|ref|XP_001731406.1| hypothetical protein MGL_1589 [Malassezia globosa CBS 7966]
 gi|159105306|gb|EDP44192.1| hypothetical protein MGL_1589 [Malassezia globosa CBS 7966]
          Length = 948

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 128/403 (31%), Positives = 208/403 (51%), Gaps = 49/403 (12%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPML 60
           F  +GL P ++ ++L  G+  PTPIQ + IP +L +   DV G+A+TG+GKT S+++P+L
Sbjct: 81  FQSMGLHPSLLRSLLLRGFTTPTPIQRRAIPAILAQPSQDVVGMARTGSGKTLSYIVPLL 140

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQV---------ADNFEKYGKNYNLTVALLIGGIP 111
             L    +     ++LIL P+RELA Q+             +   +N  +  A+++GG  
Sbjct: 141 QRLNGRHSTSFGIKSLILCPSRELAFQILKVGKDLARGWRSDDNARNEAIRWAVIVGGEG 200

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q   +    DV+I TPGR+L       L + ++E +V DEADR+ +MGF   ++ + 
Sbjct: 201 LDEQFAMMTANPDVVIATPGRLLHLVVEMNLDLKSVEYVVFDEADRLFEMGFAEQLEELL 260

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
             +P TRQTLLFSAT+   L + +   L+ NPK I ++  S  +  +   F +   Q  K
Sbjct: 261 RRLPTTRQTLLFSATLPKTLVEFARAGLEANPKLIRLDADSKISPDLRMAFFSIKPQ-EK 319

Query: 231 KCALLQQL----------------------------------LQSQDTMK--NGIIFCNQ 254
             ALLQ L                                    + D ++    IIFC  
Sbjct: 320 DAALLQLLRDVIQVPVHTAPDTSVSSSTSSAAAADSKKKRKRAHAVDQLQPYQTIIFCAT 379

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K +V  L   L   G++   I+ ++DQ +R   ++ F+ G   L++ +DLAARG+D+P +
Sbjct: 380 KHHVEYLLLLLTTMGYTCSHIYSSLDQAARSIQMNLFRSGQTSLLIVTDLAARGIDLPVL 439

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            HV N+D P +   ++HR+GRT RAGR G A++L    ++ ++
Sbjct: 440 EHVINYDFPPQPRIFVHRVGRTARAGRRGWAWSLCTHAELPYL 482


>gi|281183435|gb|ADA53586.1| RE22480p [Drosophila melanogaster]
          Length = 403

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F    + 
Sbjct: 31  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATF---SIA 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    +R  + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 88  ILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 148 GCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F+++P  I V     T E I+  F     Q + K   L  L  +
Sbjct: 208 LLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQ-FYVNVKQENWKLGTLCDLYDT 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 267 L-SITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  +D + +  IE
Sbjct: 326 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIE 385

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 386 QFYYTTIEEMPANIADL 402


>gi|153005772|ref|YP_001380097.1| DEAD/DEAH box helicase domain-containing protein [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029345|gb|ABS27113.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp.
           Fw109-5]
          Length = 585

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 118/376 (31%), Positives = 200/376 (53%), Gaps = 16/376 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ +G  P ++ A+   GY++PT +Q   +    +  D+   ++TG+GKT +F L +   
Sbjct: 4   FSSVGAHPALLPALDRRGYLEPTSVQAAVLEPAHRGQDLLVSSRTGSGKTVAFGLALAET 63

Query: 63  L--------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           L        E G      P  L++ PTRELA QV         +    VA  +GG+    
Sbjct: 64  LLGDADAFGEAG-----PPGALVVAPTRELAVQVQRELAWLFADAGGRVASCVGGMDPRR 118

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           + + L  G  V++ TPGR++DH  RG L ++ +  LV+DEAD MLDMGF   ++ +    
Sbjct: 119 EARALAEGTHVVVGTPGRLVDHLERGALDLSALRALVLDEADEMLDMGFREELEKLLGAA 178

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  R+T+LFSAT+   + ++++ + ++  RI   TP+  A           A   ++ A+
Sbjct: 179 PPDRRTVLFSATLPRPILELAKRYTRDASRI-AATPAGEAHADIAYRAHVVAPREREHAV 237

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +  L +++    + ++F   ++ V +   SL ++GF V AI G + Q  R + L + ++G
Sbjct: 238 VNVLREAEPP--SALVFRATREAVQHTAVSLGERGFEVVAISGELTQAERTRALKSLRDG 295

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             +++VA+D+AARGLD+P +  V + D+P  AE   HR GRTGRAGR G A  L A  + 
Sbjct: 296 RARVLVATDVAARGLDLPGIALVLHADLPRDAEALQHRSGRTGRAGRKGVAVLLAAPPER 355

Query: 355 KHIDAIEKLIEKKVDW 370
             ++ + +    + +W
Sbjct: 356 YRLERMLRDAGVRAEW 371


>gi|322391023|ref|ZP_08064527.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           parasanguinis ATCC 903]
 gi|321142253|gb|EFX37727.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           parasanguinis ATCC 903]
          Length = 453

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 124/368 (33%), Positives = 196/368 (53%), Gaps = 13/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +    P +  A+ +  + + T +Q K IP+VL  +D+ G ++TG+GKT +F+LP+ 
Sbjct: 7   MKFTEFNFKPYIQEALKEINFREATEVQEKLIPIVLAGNDLVGESKTGSGKTHTFLLPIF 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L +   +V     +I  P+RELA Q+     +   +    + ++  +GG     Q +K
Sbjct: 67  QTLNEDSQQVE---AVITAPSRELATQIYQAARQIASHSEKEIRIVNYVGGTDKSRQIEK 123

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+ +   ++I TPGRI D    G L ++     V+DEAD  LDMGF+  +  I S +P  
Sbjct: 124 LQVKQPHIVIGTPGRIYDLVASGDLAIHKAHTFVVDEADMTLDMGFLSTVDKIASSLPQQ 183

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  ++TI++  V+T  +        +Q
Sbjct: 184 LQFLVFSATIPQKLQPFLKKYLSNPVMEQIKTKTVISDTIDNWLVSTKGRDKN-----EQ 238

Query: 238 LLQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + Q   T++    +IF N K    +L   L  QG  V  IHG+I  R R +I++  K   
Sbjct: 239 IYQLTKTLQPYLAMIFVNTKTRADDLHAYLVAQGLKVAKIHGDIPPRERKRIMNQVKNLD 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D  
Sbjct: 299 FEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGVAITLYQPSDDS 358

Query: 356 HIDAIEKL 363
            I  +EK+
Sbjct: 359 DIRELEKM 366


>gi|308807707|ref|XP_003081164.1| myc-regulated DEAD/H box 18 RNA helicase-like (ISS) [Ostreococcus
            tauri]
 gi|116059626|emb|CAL55333.1| myc-regulated DEAD/H box 18 RNA helicase-like (ISS) [Ostreococcus
            tauri]
          Length = 2729

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 129/408 (31%), Positives = 215/408 (52%), Gaps = 24/408 (5%)

Query: 3    FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA++GL+     A+ D  G+   T +Q  T+P ++Q  DV   A+TG+GKT  F+LP + 
Sbjct: 2203 FANMGLTEASARAIRDVMGFTHATSVQDATLPHIMQGLDVLARAKTGSGKTVGFLLPAIE 2262

Query: 62   ILEKGRARVRMPRT-LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +  A  R   + L++ PTRELA+Q+ +  +     +     ++ GG    ++ K+L+
Sbjct: 2263 RLARAGAPQRGNVSCLVISPTRELASQIGEEAKSLLSFHPFKCQVVFGGTNINSERKRLK 2322

Query: 121  -RGADVLICTPGRILDHFNRGKLL--MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                + LI TPGR++DHF  G L     N+++LV+DEAD++LDMGF P ++ I S +P  
Sbjct: 2323 TEPVEFLIATPGRLIDHFESGDLARACQNLDVLVLDEADQLLDMGFRPSLEKILSFLPNQ 2382

Query: 178  RQTLLFSATMTDELQKVSENFLQNPKR----IEVNTPSSTAETIEHCFVATYAQYSKKCA 233
            RQTLLFSAT+   + +++ N L+   +    +  + P++  +  +   +A +  +     
Sbjct: 2383 RQTLLFSATVPKTVHQIAANALRPGHQYIDCVGEDAPATNLQVKQSLIMAPFHDH---LT 2439

Query: 234  LLQQLL---QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            L+ Q++   Q+++     ++F    ++      + E  G  V  IH    Q  R K    
Sbjct: 2440 LMTQVIERHQAEEQNHKIMVFFTTARSTQLASETFEAMGKPVFEIHSRKSQAVRTKAADK 2499

Query: 291  FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
            F+     +M +SD+ ARG+D PDV  V    VP+  E YIHR+GRTGRAG+ GK   ++ 
Sbjct: 2500 FRASRAAVMFSSDVTARGMDFPDVTMVIQIGVPSNREQYIHRLGRTGRAGKTGKGLLMLD 2559

Query: 351  KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
              +   ++ +  L  + +D      SS++P   + D A     RK NP
Sbjct: 2560 PAEKFFMNGVRDLPIEVLD------SSVDP---QTDQAVRLAIRKVNP 2598


>gi|115532548|ref|NP_001040789.1| hypothetical protein H20J04.4 [Caenorhabditis elegans]
 gi|82654504|gb|ABB88208.1| Hypothetical protein H20J04.4b [Caenorhabditis elegans]
          Length = 561

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 201/378 (53%), Gaps = 14/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LG+   +   +        TP+Q   IP +L+  D+ G A+TGTGKT +F +P   I
Sbjct: 91  FSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIP---I 147

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K          LIL PTRELA Q+A+ F   GK   L  ++++GG     Q ++L   
Sbjct: 148 LQKLSVDPYGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQARELSER 207

Query: 123 ADVLICTPGRILDHFNRG----KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             V++ TPGR+ D           +   I+  V+DEADRML+  +   ++ I   +   R
Sbjct: 208 PHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESISEKR 267

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIE--VNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           QTLL SAT+T+ +  +     + P   E       ST + +E  +V      + K A L 
Sbjct: 268 QTLLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDRLEQKYVV--CPVAVKDAYLV 325

Query: 237 QLLQ--SQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            +++  S+   K+ + IF    +    L +  E  GF V ++H  I Q+ R+  LS F+ 
Sbjct: 326 YVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRS 385

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            T+Q+++ +D+A+RGLDIP V  V N +VP   + YIHR+GR+ RAGR G A + V + D
Sbjct: 386 KTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYD 445

Query: 354 IKHIDAIEKLIEKKVDWL 371
           ++ + A+E++I KK+D L
Sbjct: 446 VELLQAVEQVIGKKLDEL 463


>gi|322700752|gb|EFY92505.1| ATP-dependent RNA helicase DHH1 [Metarhizium acridum CQMa 102]
          Length = 502

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 119/362 (32%), Positives = 191/362 (52%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +  L   ++  + +AG+ KP+PIQ + IP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 49  LEFENFALKRDLLMGIFEAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPAL 108

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E+   +V   + LIL PTRELA Q +   +  GK+  + V +  GG        +L+
Sbjct: 109 ---ERINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDILRLQ 165

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +    ++   + ++DEAD++L + F P I+ +    P  RQ 
Sbjct: 166 DPVHIVVGTPGRILDLAGKSVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQV 225

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++  S+  + +P  I +     T   I   +   + +  +K   L  L  
Sbjct: 226 MLFSATFPLSVKDFSDKNMVSPYEINL-MDELTLRGITQYY--AFVEEKQKVHCLNTLF- 281

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q++R ++  +F+ G  + +V
Sbjct: 282 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMQQQARNRVFHDFRNGVCRNLV 341

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 342 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNI 401

Query: 361 EK 362
           E+
Sbjct: 402 ER 403


>gi|190405946|gb|EDV09213.1| dead box protein [Saccharomyces cerevisiae RM11-1a]
          Length = 431

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 143/432 (33%), Positives = 222/432 (51%), Gaps = 37/432 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGLS  +  ++      +PT IQ   IP +L+  D  G A+TG+GKT +F  PMLT
Sbjct: 3   DFKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +  + +     ++L PTRELA Q+A+ F   G + N+ V++++GG     Q   L+R
Sbjct: 63  KWSEDPSGMF---GVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQR 119

Query: 122 GADVLICTPGRILDHF------NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
               +I TPGR+  H         G L+    + LV+DEAD +L   F  ++    S +P
Sbjct: 120 KPHFIIATPGRLAHHIMSSGDDTVGGLM--RAKYLVLDEADILLTSTFADHLATCISALP 177

Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPK------RIE----VNTPSSTAETIEHCFVA 223
               RQTLLF+AT+TD+++ +    +Q  K      ++E    V  PS+    IE+  V 
Sbjct: 178 PKDKRQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLK--IEYILVP 235

Query: 224 TYAQYSKKCALLQQLLQSQDTM-KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
            +     K A L QLL  ++   K  IIF N+      L  +L++    V ++H  + Q+
Sbjct: 236 EHV----KEAYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQ 291

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R   L  F+    + ++A+D+A+RGLDIP V  V N+D+P+  + +IHR GRT RAGR 
Sbjct: 292 ERTNSLHRFRANAARTLIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRI 351

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG--DLSSLNPPLEKIDIAQHNHARKNNPIP 400
           G A + V + D+  I AIE  I KK+   N   D + +   L K+       A++ + + 
Sbjct: 352 GDAISFVTQRDVSRIQAIEDRINKKMTETNKVHDTAVIRKALTKV-----TKAKRESLMA 406

Query: 401 QKSTGFDRRKKN 412
            +   F  RK+ 
Sbjct: 407 MQKENFGERKRQ 418


>gi|295667643|ref|XP_002794371.1| ATP-dependent RNA helicase DBP4 [Paracoccidioides brasiliensis
           Pb01]
 gi|226286477|gb|EEH42043.1| ATP-dependent RNA helicase DBP4 [Paracoccidioides brasiliensis
           Pb01]
          Length = 816

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 122/350 (34%), Positives = 197/350 (56%), Gaps = 12/350 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL LS   +  +  + +   T IQ K +P  L+  D+ G A+TG+GKT +F++P+L +
Sbjct: 51  FSDLPLSEASLDGLSASHFKTLTSIQAKALPHALKGRDILGAAKTGSGKTLAFLVPLLEL 110

Query: 63  L-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  K          L+L PTRELA Q+ +   K G++++ +  L+IGG   + + ++L R
Sbjct: 111 LYRKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHSFSAGLVIGGKSLQEEQERLGR 170

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++      N I++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 171 -MNILVCTPGRMLQHMDQTAAFDTNRIQLLVLDEADRIMDMGFQNTVDAIVEHLPKERQT 229

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYSKKCALLQQL 238
           +LFSAT T ++  ++   L++P+ I V+  +S+A    +   ++ T     +K   L   
Sbjct: 230 MLFSATQTQKVSDLARLSLRDPEYISVHEAASSATPAKLHQNYIVT--PLPEKLDTLWSF 287

Query: 239 LQSQDTMKNGI-IFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++S  ++K+ I +F +  K V  +  S    + G S+  +HG   Q +R+ I   F    
Sbjct: 288 IRS--SLKSKIMVFFSSGKQVRFVYESFRHMQPGISLLHLHGRQKQGARVDITKKFSVAK 345

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
              + A+D+AARGLD P V  V   D P  A+ YIHR GRT R  R+G+A
Sbjct: 346 HACLFATDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRA 395


>gi|148559538|ref|YP_001258161.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840]
 gi|256368588|ref|YP_003106094.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
 gi|148370795|gb|ABQ60774.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis
           ATCC 25840]
 gi|255998746|gb|ACU47145.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
          Length = 626

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 190/347 (54%), Gaps = 10/347 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEK- 65
           ++P +  A+   GY   T +Q   +       D+   AQTG+GKT +F L M  TILE  
Sbjct: 7   IAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMANTILEDE 66

Query: 66  ---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
              G A    P  +I+ PTRELA QV    E    +    +A  +GG+    + + LERG
Sbjct: 67  LRFGDAGA--PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALERG 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGR+ DH  R  L M+ +  +V+DEAD MLDMGF   ++ I    P  R+TL+
Sbjct: 125 SHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDRRTLM 184

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++++ F  N  RI V + +S    I++  +     + +  A++  LL   
Sbjct: 185 FSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPV-PPHERDHAIINTLLYYD 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +N IIFC+ ++ V ++   L  +GF+V A+ G + Q  R   L   ++G  ++ VA+
Sbjct: 244 S--QNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVAT 301

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+P++  V + D+P   +  +HR GRTGRAGR G    +V
Sbjct: 302 DVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVV 348


>gi|168003567|ref|XP_001754484.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694586|gb|EDQ80934.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 704

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 129/390 (33%), Positives = 203/390 (52%), Gaps = 13/390 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA L LS +    + +  +V  T IQ   IP  L  HDV G A+TG+GKT +F+LP++ 
Sbjct: 58  DFAALPLSDRTQRGLKEHKFVHMTAIQRAAIPHALCGHDVLGAAKTGSGKTLAFLLPVVE 117

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L + +   V     +I+ PTRELA Q+ D   K GK+++++  LLIGG       K+  
Sbjct: 118 KLYRLKWGAVDGVGAIIISPTRELAGQIFDELRKVGKHHSISAGLLIGGRKGVDTEKETV 177

Query: 121 RGADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              ++L+CTPGR+L H +       + +++LV+DEADR+LDMGF   +  I   +P  RQ
Sbjct: 178 MNLNILVCTPGRLLQHMDETPNFDCSQLQVLVLDEADRILDMGFSGTLNAILGQLPKERQ 237

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT T  ++ ++   L++P+ + V+  S+ A               +K  +L   +
Sbjct: 238 TMLFSATQTKSVKDLARLSLRDPEFLAVHAESAAATPARLQQTVMIVPLDEKMDMLWSFV 297

Query: 240 QS--QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++  Q  M   +  C Q+   V+      + G  +  +HG + Q +RM     + E    
Sbjct: 298 KTHLQTKMLVFLSSCKQQVKFVHEAFRRLRPGIPLACLHGRMKQMARMATFYKYCESKHA 357

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+ A+D+AARGLD P V  V   D P     YIHR+GRT R    G +   +A  +   +
Sbjct: 358 LLFATDVAARGLDFPTVDWVLQVDCPEDVATYIHRVGRTARYTASGHSLLFLAPSEEPML 417

Query: 358 DAIE------KLI---EKKVDWLNGDLSSL 378
            A+E      +LI   ++KV  ++G L+ L
Sbjct: 418 AALEAAKIPVRLIKANKEKVQPVSGALAGL 447


>gi|296114606|ref|ZP_06833259.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295978962|gb|EFG85687.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 593

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 114/343 (33%), Positives = 190/343 (55%), Gaps = 6/343 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P +  A+ + GY  PTP+Q   + +     D+   AQTG+GKT +F L M   L  G  R
Sbjct: 8   PALQRALDEQGYENPTPVQTAVLDVAADGRDLLVSAQTGSGKTVAFGLAMADTLLGGDER 67

Query: 70  VR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           +     P  +I+ PTRELA QV              +   IGG+    + + L+ GA ++
Sbjct: 68  LGPAGAPLAVIIAPTRELAMQVTRELTWLYAAAGARIVSCIGGMDARREARALQIGAHIV 127

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+ DH +RG+L+M ++ ++V+DEAD MLD+GF   ++ +   +P TR+TLLFSAT
Sbjct: 128 VGTPGRLCDHLSRGRLVMTDLRVVVLDEADEMLDLGFRDELEQLLDAMPKTRRTLLFSAT 187

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
           +  E+  +++ +  +  RI+  + +     IE+  + T A+      +   +L+  D+  
Sbjct: 188 IAREIASLAKRYQHDALRIDTLSGTKQHADIEYRALLTDAREIIPSVV--NVLRETDS-P 244

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             ++FC  ++ V +L  +L ++GFS  A+ G + Q  R + + + ++G   + VA+D+AA
Sbjct: 245 TTMVFCATRELVRHLQSALVERGFSSVALSGELGQAERTRAIDSLRKGQASVCVATDVAA 304

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           RG+DIP +  V +  +P      +HR GRTGRAGR G    +V
Sbjct: 305 RGIDIPALALVVHASLPTDPATLLHRSGRTGRAGRKGVCVLMV 347


>gi|145349289|ref|XP_001419069.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579300|gb|ABO97362.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 478

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 126/373 (33%), Positives = 200/373 (53%), Gaps = 21/373 (5%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM--PRTLI 77
           GY  PT +Q + +P++   HD   +A+TG+GKT +F+LP    + + R   +   P  L+
Sbjct: 74  GYESPTAVQAQCLPVIWSGHDALVMAKTGSGKTLAFLLPAYAQISRQRPLTKREGPIALV 133

Query: 78  LEPTRELAAQVADN---FEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
           L PTRELA+Q+A+    F K+G +     A+  GG+    Q KKL  GA++++ TPGR++
Sbjct: 134 LAPTRELASQIANEAHKFTKFGVSGARCCAIF-GGVSKRDQFKKLRAGAEIVVATPGRLV 192

Query: 135 DHFNRGKLLMNN------IEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           D      L M N      +  L +DEADRMLDMGF   +++I   V   RQ ++FSATM 
Sbjct: 193 D-----VLCMKNSTNLRRVTYLALDEADRMLDMGFEKIVRSICQAVRPDRQCVMFSATMP 247

Query: 189 DELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
             +Q+++ + L ++   + +       E +    V  +   +++ A L + L        
Sbjct: 248 AAMQRLARDVLARDAVTVSIGNVGGANEDVRQV-VYVFEDDARRAAWLFENLGDAVDEGQ 306

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            I+F N K +V  L + L  +G    A+HG++DQ  R   +  FK     ++VA+D+AAR
Sbjct: 307 AIVFVNHKSSVEELVNELATRGIKAVALHGDLDQAQRQFAMKAFKSEHAHVLVATDVAAR 366

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTL-VAKEDIKHIDAIEKLIE 365
           GLD+  +  V NF        ++HRIGRTGRAG   G+A+TL  A++  K    +E+ +E
Sbjct: 367 GLDVEAIKTVVNFHPARDMSTHVHRIGRTGRAGALDGRAYTLFTARDSAKFAQQLEQNLE 426

Query: 366 KKVDWLNGDLSSL 378
                +  DL +L
Sbjct: 427 AAGQPVPLDLKAL 439


>gi|1488521|emb|CAA68194.1| RNA helicase [Arabidopsis thaliana]
          Length = 671

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 178/335 (53%), Gaps = 18/335 (5%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV-------RMPRTLIL 78
           PIQ  T  +VL   D+ G A+TG GKT +FVLP+L  L  G A+        R P  L+L
Sbjct: 121 PIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVL 180

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QVA +F+ YG +  L+   L GG     Q  KL+RG D+++ TPGRI DH  
Sbjct: 181 LPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSIPVQEGKLKRGVDIVVGTPGRIKDHIE 240

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--QTLLFSATMTDELQKVSE 196
           R  L  +  +  V+DEAD ML MGF+  ++ I   V  +   QTLLFSAT+   ++ +S 
Sbjct: 241 RQNLDFSYFKFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISN 300

Query: 197 NFLQ-NPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
            FL+ + K I++  N     + ++ H  +A     +    L+  ++    +    IIF  
Sbjct: 301 RFLKRDQKTIDLVGNDKMKASNSVRH--IAIPCNKAAMARLIPDIISCYSSGGQTIIFAE 358

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            K  V  L   L+       A+HG I Q  R   L+ F+ G    +VA+++AARGLDI D
Sbjct: 359 TKVQVSELSGLLDGSR----ALHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDIND 414

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           V  +   + P   E YIHR GRTGRAG  G   TL
Sbjct: 415 VQLIIQCEPPREVEAYIHRSGRTGRAGNTGVPVTL 449


>gi|312867841|ref|ZP_07728046.1| putative DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           parasanguinis F0405]
 gi|311096596|gb|EFQ54835.1| putative DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           parasanguinis F0405]
          Length = 425

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 124/368 (33%), Positives = 196/368 (53%), Gaps = 13/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +    P +  A+ +  + + T +Q K IP+VL  +D+ G ++TG+GKT +F+LP+ 
Sbjct: 7   MKFTEFNFKPYIQEALKEINFREATEVQEKLIPIVLAGNDLVGESKTGSGKTHTFLLPIF 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L +   +V     +I  P+RELA Q+     +   +    + ++  +GG     Q +K
Sbjct: 67  QTLNEDSQQVE---AVITAPSRELATQIYQAARQIASHSEKEIRIVNYVGGTDKSRQIEK 123

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+ +   ++I TPGRI D    G L ++     V+DEAD  LDMGF+  +  I S +P  
Sbjct: 124 LQVKQPHIVIGTPGRIYDLVASGDLAIHKAHTFVVDEADMTLDMGFLSTVDKIASRLPQQ 183

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  ++TI++  V+T  +        +Q
Sbjct: 184 LQFLVFSATIPQKLQPFLKKYLSNPVMEQIKTKTVISDTIDNWLVSTKGRDKN-----EQ 238

Query: 238 LLQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + Q   T++    +IF N K    +L   L  QG  V  IHG+I  R R +I++  K   
Sbjct: 239 IYQLTKTLQPYLAMIFVNTKTRADDLHAYLVAQGLKVAKIHGDIPPRERKRIMNQVKNLD 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D  
Sbjct: 299 FEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGVAITLYQPSDDS 358

Query: 356 HIDAIEKL 363
            I  +EK+
Sbjct: 359 DIRELEKM 366


>gi|306844397|ref|ZP_07476987.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1]
 gi|306275210|gb|EFM56960.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1]
          Length = 626

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 190/347 (54%), Gaps = 10/347 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEK- 65
           ++P +  A+   GY   T +Q   +       D+   AQTG+GKT +F L M  TILE  
Sbjct: 7   IAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMANTILEDE 66

Query: 66  ---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
              G A    P  +I+ PTRELA QV    E    +    +A  +GG+    + + LERG
Sbjct: 67  LRFGDAGA--PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALERG 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGR+ DH  R  L M+ +  +V+DEAD MLDMGF   ++ I    P  R+TL+
Sbjct: 125 SHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDRRTLM 184

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++++ F  N  RI V + +S    I++  +     + +  A++  LL   
Sbjct: 185 FSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPV-PPHERDHAIINTLLYYD 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +N IIFC+ ++ V ++   L  +GF+V A+ G + Q  R   L   ++G  ++ VA+
Sbjct: 244 S--QNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVAT 301

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+P++  V + D+P   +  +HR GRTGRAGR G    +V
Sbjct: 302 DVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVV 348


>gi|254713301|ref|ZP_05175112.1| DEAD-box ATP dependent DNA helicase [Brucella ceti M644/93/1]
 gi|254716345|ref|ZP_05178156.1| DEAD-box ATP dependent DNA helicase [Brucella ceti M13/05/1]
 gi|261218127|ref|ZP_05932408.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261321026|ref|ZP_05960223.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|260923216|gb|EEX89784.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261293716|gb|EEX97212.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
          Length = 626

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 190/347 (54%), Gaps = 10/347 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEK- 65
           ++P +  A+   GY   T +Q   +       D+   AQTG+GKT +F L M  TILE  
Sbjct: 7   IAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMANTILEDE 66

Query: 66  ---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
              G A    P  +I+ PTRELA QV    E    +    +A  +GG+    + + LERG
Sbjct: 67  LRFGDAGA--PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALERG 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGR+ DH  R  L M+ +  +V+DEAD MLDMGF   ++ I    P  R+TL+
Sbjct: 125 SHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDRRTLM 184

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++++ F  N  RI V + +S    I++  +     + +  A++  LL   
Sbjct: 185 FSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPV-PPHERDHAIINTLLYYD 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +N IIFC+ ++ V ++   L  +GF+V A+ G + Q  R   L   ++G  ++ VA+
Sbjct: 244 S--QNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVAT 301

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+P++  V + D+P   +  +HR GRTGRAGR G    +V
Sbjct: 302 DVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVV 348


>gi|256112630|ref|ZP_05453551.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 3 str.
           Ether]
 gi|265994071|ref|ZP_06106628.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|262765052|gb|EEZ10973.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
          Length = 626

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 190/347 (54%), Gaps = 10/347 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEK- 65
           ++P +  A+   GY   T +Q   +       D+   AQTG+GKT +F L M  TILE  
Sbjct: 7   IAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMANTILEDE 66

Query: 66  ---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
              G A    P  +I+ PTRELA QV    E    +    +A  +GG+    + + LERG
Sbjct: 67  LRFGDAGA--PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALERG 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGR+ DH  R  L M+ +  +V+DEAD MLDMGF   ++ I    P  R+TL+
Sbjct: 125 SHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDRRTLM 184

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++++ F  N  RI V + +S    I++  +     + +  A++  LL   
Sbjct: 185 FSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPV-PPHERDHAIINTLLYYD 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +N IIFC+ ++ V ++   L  +GF+V A+ G + Q  R   L   ++G  ++ VA+
Sbjct: 244 S--QNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVAT 301

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+P++  V + D+P   +  +HR GRTGRAGR G    +V
Sbjct: 302 DVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVV 348


>gi|159468063|ref|XP_001692202.1| cytoplasmic DExD/H-box RNA helicase [Chlamydomonas reinhardtii]
 gi|158278388|gb|EDP04152.1| cytoplasmic DExD/H-box RNA helicase [Chlamydomonas reinhardtii]
          Length = 405

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 196/361 (54%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGKTA+F +P++ 
Sbjct: 32  EFEDYFLKRELLMGIFEKGFEKPSPIQEESIPIALAGRDILARAKNGTGKTAAFCIPVVE 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  R  ++    L+L PTRELA Q A   ++  K  ++ V +  GG   +    +L +
Sbjct: 92  RVDPTRPVIQ---ALLLVPTRELALQTAQVCKELSKYLSIEVMVTTGGTSLKDDIMRLYQ 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++D  ++G   +N   +LV+DEAD++L   F P ++ +   +P  RQ +
Sbjct: 149 TTHIVVATPGRVVDLASKGVARLNECRMLVMDEADKLLSPEFQPVVEQLIGYLPDDRQIM 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    ++   E FL+ P  I +     T + +   +   + +  +K   L  L  S
Sbjct: 209 LYSATFPVTVKAFKEKFLRKPYIINL-MEELTLKGVTQFY--AFVEEKQKVHCLNTLF-S 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 265 KLRINQSIIFCNSVNRVELLAKKITELGYSCYYIHAKMLQSHRNRVFHDFRNGHCRNLVS 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  +D  ++  IE
Sbjct: 325 SDLFTRGIDIQSVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYDDRINLFKIE 384

Query: 362 K 362
           +
Sbjct: 385 Q 385


>gi|71027833|ref|XP_763560.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68350513|gb|EAN31277.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 894

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 126/356 (35%), Positives = 198/356 (55%), Gaps = 7/356 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+  GL   ++  +    Y KP PIQ++ IP ++   DV GIA+TG+GKT +F+LP +  
Sbjct: 419 FSQCGLPDPILKILEKREYEKPFPIQMQCIPALMCGRDVIGIAETGSGKTLAFLLPGIRH 478

Query: 62  ILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L++   R       LI+ PTREL  Q+++   K+ K+  L    + GG     Q   L+
Sbjct: 479 VLDQPPLRESDGMIVLIIAPTRELVIQISNECAKFSKSVGLRTLAVYGGAGIGEQLNALK 538

Query: 121 RGADVLICTPGRILD--HFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++ TPGR++D    ++GK+  +  +  LV+DEADRM DMGF P I  I   +   
Sbjct: 539 RGAEIVVGTPGRLIDVLTLSKGKVTNLRRVTYLVLDEADRMFDMGFAPQISAIVGNIRPD 598

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT LFSAT    ++ +++  L  P +I V     +A  ++   V       KK   L +
Sbjct: 599 RQTALFSATFPLMIENLAKKILVKPLQIVVGQRGKSASQVDQHVVVL--NDDKKLLKLLK 656

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL       N IIF N +    +L + L   G+    +HG +DQ  R   L++F+EG   
Sbjct: 657 LLGEWHEHGNIIIFVNTQLESEHLFNDLLAYGYEAGILHGGVDQTDREFTLNDFREGKKT 716

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +++A+ +AARG+D+  V  V N+  P+  E+Y+HR+GRTGRAG  G ++T +  E+
Sbjct: 717 ILIATSIAARGIDVKSVVLVINYAAPDHFEDYVHRVGRTGRAGTIGTSYTFLTPEE 772


>gi|225851664|ref|YP_002731897.1| DEAD-box ATP-dependent RNA helicase YdbR [Brucella melitensis ATCC
           23457]
 gi|256264826|ref|ZP_05467358.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|225640029|gb|ACN99942.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella melitensis ATCC
           23457]
 gi|263095281|gb|EEZ18908.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
          Length = 626

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 190/347 (54%), Gaps = 10/347 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEK- 65
           ++P +  A+   GY   T +Q   +       D+   AQTG+GKT +F L M  TILE  
Sbjct: 7   IAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMANTILEDE 66

Query: 66  ---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
              G A    P  +I+ PTRELA QV    E    +    +A  +GG+    + + LERG
Sbjct: 67  LRFGDAGA--PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALERG 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGR+ DH  R  L M+ +  +V+DEAD MLDMGF   ++ I    P  R+TL+
Sbjct: 125 SHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDRRTLM 184

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++++ F  N  RI V + +S    I++  +     + +  A++  LL   
Sbjct: 185 FSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPV-PPHERDHAIINTLLYYD 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +N IIFC+ ++ V ++   L  +GF+V A+ G + Q  R   L   ++G  ++ VA+
Sbjct: 244 S--QNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVAT 301

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+P++  V + D+P   +  +HR GRTGRAGR G    +V
Sbjct: 302 DVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVV 348


>gi|194856991|ref|XP_001968873.1| GG25110 [Drosophila erecta]
 gi|190660740|gb|EDV57932.1| GG25110 [Drosophila erecta]
          Length = 389

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 205/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F    + 
Sbjct: 17  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATF---SIA 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    +R  + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 74  ILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 134 GCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F++ P  I V     T E I+  F     Q + K   L  L  +
Sbjct: 194 LLSATMPPDVLEVSRCFMREPVSILVKKEELTLEGIKQ-FYVNVKQENWKLGTLCDLYDT 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 253 L-SITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  +D + +  IE
Sbjct: 312 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIE 371

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 372 QFYHTTIEEMPANIADL 388


>gi|294955800|ref|XP_002788686.1| ATP-dependent RNA helicase dbp-4, putative [Perkinsus marinus ATCC
           50983]
 gi|239904227|gb|EER20482.1| ATP-dependent RNA helicase dbp-4, putative [Perkinsus marinus ATCC
           50983]
          Length = 833

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 124/378 (32%), Positives = 202/378 (53%), Gaps = 21/378 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS K    + D G+ K TPIQ   IP  L   DV G A+TG+GK+ +F++P++  
Sbjct: 122 FGELPLSRKTQLGLKDHGFTKLTPIQRSAIPYALAGRDVLGEARTGSGKSLAFIIPVIEK 181

Query: 63  LEKGRARVRMPRT-------LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           L       RM  +       +++ PTREL+AQ+    ++ G +++ +   ++GG  F+ +
Sbjct: 182 L------YRMKWSADDGVGAVLISPTRELSAQIFTVLQQVGSHHDFSAGCVVGGRKFQEE 235

Query: 116 NKKLERGADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
            K       +++CTPGR+L H        ++N+++LV+DEADR+LD+GF   I+ I   +
Sbjct: 236 QKVFP-SLSIVVCTPGRLLQHIEETAGSDLSNVQVLVLDEADRILDLGFKRTIELILDAL 294

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQTLLFSATM   +Q+++   L NP+ + V+   ++A       +    +  +K   
Sbjct: 295 PPKRQTLLFSATMRTSVQQLATLALDNPELLSVSRNLNSATPTGLRQLCMTVKLEEKVNS 354

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFK 292
           L   L++    K  I+F +  K V  L  +    + G +V  +HG +    RMK+   F 
Sbjct: 355 LFSFLKTHAQTKI-IVFVSATKQVRFLYETFRRLRPGLAVLELHGGMSLDKRMKVFDQFA 413

Query: 293 EGTIQL-MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
                L ++ +D+AARG+D P V  V   D P+ A+ YIHR+GRT R  R+G A      
Sbjct: 414 SKDKGLCLICTDVAARGVDFPQVDWVIQMDAPDTADTYIHRVGRTARFDRNGNALMFAT- 472

Query: 352 EDIKHIDAIEKLIEKKVD 369
            +++    + +L +KKVD
Sbjct: 473 -EVEQESLLPELTQKKVD 489


>gi|170086121|ref|XP_001874284.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651836|gb|EDR16076.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 517

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 123/353 (34%), Positives = 206/353 (58%), Gaps = 15/353 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGLSP+ +  + D G+   T +Q K+IP++L   D+ G A+TG+GKT +F++P +
Sbjct: 1   MPFSDLGLSPQTLQGLSDMGFSTMTSVQQKSIPVLLAGKDLLGAARTGSGKTLAFLIPAV 60

Query: 61  TILEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L + + + +     +I+ PTRELA Q+    +    +++ T  ++IGG    A+ ++L
Sbjct: 61  ELLHRLKFKPMNGTGIIIITPTRELALQIFGVAKDLMAHHSQTFGIVIGGTSVRAERERL 120

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
            +G ++L+ TPGR+LDH    K  +  N++ LVIDEADR+L++GF   +++I S++P   
Sbjct: 121 IKGVNLLVATPGRLLDHLREAKGFVFRNLKGLVIDEADRILEVGFEEEMKSIISILPKED 180

Query: 178 RQTLLFSATMTDELQKVSENFLQ-NPKRIEVNT--PSSTAETIEHCFVATYAQYSKKCAL 234
           RQT+LFSAT T ++  ++   L+  P  I+V+    +ST  T+   +V   +   ++  L
Sbjct: 181 RQTMLFSATQTTKVTDLARISLRPGPIHIDVDKEEATSTVSTLSQGYVVCPS--DRRFLL 238

Query: 235 LQQLLQSQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
           L   L+ ++  K  I+F   CN  K    L + ++     V  +HG   Q+ R      F
Sbjct: 239 LYTFLK-KNLKKKVIVFFSSCNSVKYHAELMNYID---VPVLDLHGKQKQQKRTNTFFEF 294

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
                 ++ ++++AARGLDIP V  +  FD P+   +YIHR+GRT RAG+ GK
Sbjct: 295 INAETGILFSTNVAARGLDIPRVDWIVQFDPPDDPRDYIHRVGRTARAGKVGK 347


>gi|326408143|gb|ADZ65208.1| DEAD-box ATP-dependent RNA helicase YdbR [Brucella melitensis M28]
          Length = 626

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 190/347 (54%), Gaps = 10/347 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEK- 65
           ++P +  A+   GY   T +Q   +       D+   AQTG+GKT +F L M  TILE  
Sbjct: 7   IAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMANTILEDE 66

Query: 66  ---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
              G A    P  +I+ PTRELA QV    E    +    +A  +GG+    + + LERG
Sbjct: 67  LRFGDAGA--PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALERG 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGR+ DH  R  L M+ +  +V+DEAD MLDMGF   ++ I    P  R+TL+
Sbjct: 125 SHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDRRTLM 184

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++++ F  N  RI V + +S    I++  +     + +  A++  LL   
Sbjct: 185 FSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPV-PPHERDHAIINTLLYYD 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +N IIFC+ ++ V ++   L  +GF+V A+ G + Q  R   L   ++G  ++ VA+
Sbjct: 244 S--QNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVAT 301

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+P++  V + D+P   +  +HR GRTGRAGR G    +V
Sbjct: 302 DVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVV 348


>gi|254690433|ref|ZP_05153687.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella abortus bv. 6
           str. 870]
 gi|256258685|ref|ZP_05464221.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella abortus bv. 9
           str. C68]
 gi|260755981|ref|ZP_05868329.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260885002|ref|ZP_05896616.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|297247521|ref|ZP_06931239.1| ATP-dependent RNA helicase DeaD [Brucella abortus bv. 5 str. B3196]
 gi|260676089|gb|EEX62910.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260874530|gb|EEX81599.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|297174690|gb|EFH34037.1| ATP-dependent RNA helicase DeaD [Brucella abortus bv. 5 str. B3196]
          Length = 626

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 190/347 (54%), Gaps = 10/347 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEK- 65
           ++P +  A+   GY   T +Q   +       D+   AQTG+GKT +F L M  TILE  
Sbjct: 7   IAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMANTILEDE 66

Query: 66  ---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
              G A    P  +I+ PTRELA QV    E    +    +A  +GG+    + + LERG
Sbjct: 67  LRFGDAGA--PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALERG 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGR+ DH  R  L M+ +  +V+DEAD MLDMGF   ++ I    P  R+TL+
Sbjct: 125 SHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDRRTLM 184

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++++ F  N  RI V + +S    I++  +     + +  A++  LL   
Sbjct: 185 FSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPV-PPHERDHAIINTLLYYD 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +N IIFC+ ++ V ++   L  +GF+V A+ G + Q  R   L   ++G  ++ VA+
Sbjct: 244 S--QNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVAT 301

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+P++  V + D+P   +  +HR GRTGRAGR G    +V
Sbjct: 302 DVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVV 348


>gi|17988107|ref|NP_540741.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 1 str.
           16M]
 gi|256045915|ref|ZP_05448789.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella melitensis bv. 1
           str. Rev.1]
 gi|260563201|ref|ZP_05833687.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|265992328|ref|ZP_06104885.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|17983860|gb|AAL53005.1| ATP-dependent RNA helicase dead [Brucella melitensis bv. 1 str.
           16M]
 gi|260153217|gb|EEW88309.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|263003394|gb|EEZ15687.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
          Length = 626

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 190/347 (54%), Gaps = 10/347 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEK- 65
           ++P +  A+   GY   T +Q   +       D+   AQTG+GKT +F L M  TILE  
Sbjct: 7   IAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMANTILEDE 66

Query: 66  ---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
              G A    P  +I+ PTRELA QV    E    +    +A  +GG+    + + LERG
Sbjct: 67  LRFGDAGA--PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALERG 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGR+ DH  R  L M+ +  +V+DEAD MLDMGF   ++ I    P  R+TL+
Sbjct: 125 SHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDRRTLM 184

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++++ F  N  RI V + +S    I++  +     + +  A++  LL   
Sbjct: 185 FSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPV-PPHERDHAIINTLLYYD 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +N IIFC+ ++ V ++   L  +GF+V A+ G + Q  R   L   ++G  ++ VA+
Sbjct: 244 S--QNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVAT 301

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+P++  V + D+P   +  +HR GRTGRAGR G    +V
Sbjct: 302 DVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVV 348


>gi|254700936|ref|ZP_05162764.1| DEAD-box ATP dependent DNA helicase [Brucella suis bv. 5 str. 513]
 gi|261751452|ref|ZP_05995161.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261741205|gb|EEY29131.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
          Length = 626

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 190/347 (54%), Gaps = 10/347 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEK- 65
           ++P +  A+   GY   T +Q   +       D+   AQTG+GKT +F L M  TILE  
Sbjct: 7   IAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMANTILEDE 66

Query: 66  ---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
              G A    P  +I+ PTRELA QV    E    +    +A  +GG+    + + LERG
Sbjct: 67  LRFGDAGA--PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALERG 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGR+ DH  R  L M+ +  +V+DEAD MLDMGF   ++ I    P  R+TL+
Sbjct: 125 SHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDRRTLM 184

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++++ F  N  RI V + +S    I++  +     + +  A++  LL   
Sbjct: 185 FSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPV-PPHERDHAIINTLLYYD 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +N IIFC+ ++ V ++   L  +GF+V A+ G + Q  R   L   ++G  ++ VA+
Sbjct: 244 S--QNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVAT 301

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+P++  V + D+P   +  +HR GRTGRAGR G    +V
Sbjct: 302 DVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVV 348


>gi|289807041|ref|ZP_06537670.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 339

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 113/299 (37%), Positives = 174/299 (58%), Gaps = 7/299 (2%)

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
           PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K LE G D+LI T GR
Sbjct: 3   PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGR 62

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL--LFSATMTDE 190
           ++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P   Q L  LFSAT++  
Sbjct: 63  LIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLNMLFSATLSYR 122

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
           +++++   + N + +EV     T   I E  F   Y    +K  LLQ L++ ++     I
Sbjct: 123 VRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLLQTLIE-EEWPDRAI 178

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           IF N K    ++   L   G  V  + G++ Q+ R++IL  F  G + ++VA+D+AARGL
Sbjct: 179 IFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGL 238

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++ AIE  I   +
Sbjct: 239 HIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIESYIGHSI 297


>gi|21465183|gb|AAM54703.1| vasa-like [Sparus aurata]
          Length = 395

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 117/315 (37%), Positives = 182/315 (57%), Gaps = 14/315 (4%)

Query: 45  AQTGTGKTASFVLPMLT-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKN 98
           A TG+G TA+F+LP+L  +L  G A      ++ P  +I+ PTREL  Q+     K+   
Sbjct: 4   AHTGSGLTAAFLLPILQQLLADGVAASSFSELQEPEAIIVAPTRELINQIYLEARKFAYG 63

Query: 99  YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             +   ++ GG+    Q +++ RG +VL  TPGR+LD   RGK+ +  +   V+DEADRM
Sbjct: 64  TCVRPVVVYGGVSTGHQIREICRGCNVLCGTPGRLLDMIGRGKIGLTKLRYFVLDEADRM 123

Query: 159 LDMGFIPYIQNITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKR-IEVNTPSST 213
           LDMGF P ++ +           RQTL+FSAT  D++Q+++ +FL+     + V    + 
Sbjct: 124 LDMGFEPDMRRLVGSPGMPSKENRQTLMFSATYPDDIQRMAADFLKTDYLFLAVGVVGAA 183

Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
              +E  FV    ++SK+  LL  LL++  T +  ++F   K+    +   L ++     
Sbjct: 184 CSDVEQTFVQV-TKFSKREQLLD-LLKTTGTERT-MVFVETKRQADFIATYLCQEKVPTT 240

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
           +IHG+ +QR R + L++F+ G   +MVA+ +AARGLDIPDV HV NFD+P   + Y+HRI
Sbjct: 241 SIHGDREQREREQALADFRSGKCPVMVATSVAARGLDIPDVQHVVNFDLPKEIDEYVHRI 300

Query: 334 GRTGRAGRHGKAFTL 348
           GRTGR G  G+A + 
Sbjct: 301 GRTGRCGNTGRAVSF 315


>gi|242814538|ref|XP_002486388.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218714727|gb|EED14150.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 502

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 120/362 (33%), Positives = 191/362 (52%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+F++P L
Sbjct: 45  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFIIPTL 104

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E+   +    + LIL PTRELA Q +   +  GK+  + V +  GG        +L 
Sbjct: 105 ---ERINPKSTKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRLN 161

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 162 DTVHIIVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 221

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  ++NP  I +     T   I   +   + +  +K   L  L  
Sbjct: 222 MLFSATFPMIVKSFKDKHMRNPYEINL-MDELTLRGITQYYA--FVEEKQKVHCLNTLF- 277

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 278 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLV 337

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 338 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKI 397

Query: 361 EK 362
           E+
Sbjct: 398 EQ 399


>gi|154286470|ref|XP_001544030.1| hypothetical protein HCAG_01076 [Ajellomyces capsulatus NAm1]
 gi|150407671|gb|EDN03212.1| hypothetical protein HCAG_01076 [Ajellomyces capsulatus NAm1]
          Length = 721

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 128/392 (32%), Positives = 212/392 (54%), Gaps = 26/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL LS      +    +   T IQ + IP  L+  D+ G A+TG+GKT +F++P+L +
Sbjct: 51  FSDLPLSEPTADGLSACHFKSLTDIQARAIPHALKGRDILGAAKTGSGKTLAFLVPLLEL 110

Query: 63  L-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  K          L+L PTRELA Q+ +   K G+++  +  L+IGG   + + ++L +
Sbjct: 111 LYRKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHTFSAGLVIGGKGLQEEQERLGK 170

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++      N+I++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 171 -MNILVCTPGRMLQHMDQTAAFDTNHIQLLVLDEADRIMDMGFQSTVDAIIDHLPKERQT 229

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVN--TPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +LFSAT T ++  ++   L++P+ + V+    S+T   ++  ++ T     +K   L   
Sbjct: 230 MLFSATQTKKVSDLARLSLRDPEYVSVHETAASATPAKLQQNYIIT--PLPEKLDTLWSF 287

Query: 239 LQSQDTMKNGII-FCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++S  ++K+ II F +  K V  +  S    + G  +  +HG   Q +R+ I   F    
Sbjct: 288 IRS--SLKSKIIVFFSSGKQVRFVYESFRHMRPGIPLLHLHGRQKQGARVDITKKFSAAK 345

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
              + A+D+AARGLD P V  V   D P  A+ YIHR GRT R  R+G+A   +  E  +
Sbjct: 346 YSCLFATDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFL--EPSE 403

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
               +++L +KK+            P+EKI++
Sbjct: 404 EAGMLKRLEQKKI------------PIEKINV 423


>gi|145493274|ref|XP_001432633.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399746|emb|CAK65236.1| unnamed protein product [Paramecium tetraurelia]
          Length = 566

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 132/363 (36%), Positives = 194/363 (53%), Gaps = 19/363 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F DL +  +++  +      KPTPIQ++ +P VL   D+ G+A +G GKT  F+LP L  
Sbjct: 119 FQDLRVDHRILKILSKMKIKKPTPIQMQGLPAVLMGRDIIGVAPSGQGKTLVFLLPALLQ 178

Query: 61  TILEKGRA---RVRMPRTLILEP-------TRELAAQVADNFEKYGKNYNLTVALL-IGG 109
            I E+ +    R   P  LIL P       T ELA Q    F+K G  +     LL IGG
Sbjct: 179 CIEEEMKMPVIRGEGPFALILLPSHELAILTYELAKQYCQKFQKKG--FPAIHCLLGIGG 236

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +   +Q + +  G  ++I TPGRI D  N+ K+ M+    +V+DEADRMLD  F   I+N
Sbjct: 237 MDMSSQLQSIRNGVHIVIGTPGRISDMVNKKKINMDLCRFIVLDEADRMLDQVFELEIRN 296

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I       RQT+LFSAT+  ++Q+ ++  L +P  + +N   S    +       Y +  
Sbjct: 297 ILEHFTGPRQTMLFSATLPKKIQEFTKQTLVDP--LVINVGRSGQINLNVIQEILYVKQE 354

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           +K   L   L+   T    +IF   + +V ++   L  +G  V  +HG   Q  R K L 
Sbjct: 355 EKLHYLLDCLKK--TTPPVVIFSEHQNDVDDINEYLLIKGVEVVGLHGGKQQEDRTKALK 412

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F  G   ++VA+D+AA+GLD PD+ HV N+D+P   E+YIHRIGRTGR G+ G+A T V
Sbjct: 413 QFLNGQKDVLVATDVAAKGLDFPDIKHVINYDMPKDIESYIHRIGRTGRQGKTGRATTFV 472

Query: 350 AKE 352
            ++
Sbjct: 473 NRQ 475


>gi|322708424|gb|EFZ00002.1| ATP dependent RNA helicase (Dhh1), putative [Metarhizium anisopliae
           ARSEF 23]
          Length = 489

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 119/362 (32%), Positives = 191/362 (52%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +  L   ++  + +AG+ KP+PIQ + IP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 36  LEFENFALKRDLLMGIFEAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPAL 95

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E+   +V   + LIL PTRELA Q +   +  GK+  + V +  GG        +L+
Sbjct: 96  ---ERINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDILRLQ 152

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +    ++   + ++DEAD++L + F P I+ +    P  RQ 
Sbjct: 153 EPVHIVVGTPGRILDLAGKSVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQV 212

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++  S+  + +P  I +     T   I   +   + +  +K   L  L  
Sbjct: 213 MLFSATFPLSVKDFSDKNMVSPYEINL-MDELTLRGITQYY--AFVEEKQKVHCLNTLF- 268

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q++R ++  +F+ G  + +V
Sbjct: 269 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMQQQARNRVFHDFRNGVCRNLV 328

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 329 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNI 388

Query: 361 EK 362
           E+
Sbjct: 389 ER 390


>gi|256053074|ref|XP_002570034.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|227287389|emb|CAY17652.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 527

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 126/391 (32%), Positives = 212/391 (54%), Gaps = 13/391 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +S  +  AV + G+   T IQ K IP +L+  D+   A+TG+GKT +F++P++ +
Sbjct: 52  FEDLPISEPIKRAVKEMGFTHMTDIQGKCIPQLLEHRDLMACAKTGSGKTLAFLIPVVEL 111

Query: 63  -LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L  G         +I+ PTREL+ Q      +  +  NL + L++GG   + + + LE+
Sbjct: 112 MLNLGLQPRNGTGAIIISPTRELSLQTYGVLGELIQFTNLRIGLIMGGSNRQTEAQNLEK 171

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           G  +L+ TPGR+LDH +  K  + +N++ LVIDEADR+LD+GF   ++ I  L+P  RQT
Sbjct: 172 GVTILVATPGRLLDHLSNTKFFLRHNLKALVIDEADRLLDIGFEVEMRQIIKLLPTVRQT 231

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTP--SSTAETIEHCFVATYAQYSKKCALLQQL 238
           +LFSAT+ ++ + ++   L+    +  + P   +T E +E  +V       ++  LL   
Sbjct: 232 MLFSATLNEKTKNLANAALKASCVMVGSAPDTEATVEGLEQGYVV--CPPDRRFCLLYTF 289

Query: 239 LQSQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L+   + K  +    C + K    L + ++     V AIHG   Q  R      F +   
Sbjct: 290 LKKNKSKKIMVFMASCMEVKFYYELLNFVDT---PVLAIHGRQKQAKRTSTFLQFVKAES 346

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++ +D+ ARGLDIP V  +  +D P+ A+ YIHR+GRT RAG  G A  ++   +++ 
Sbjct: 347 AVLLCTDVGARGLDIPKVDWILQYDPPDDAKEYIHRVGRTARAGSTGNALLVLRPHELEF 406

Query: 357 IDAIEKLIEKKVDW--LNGDLSSLNPPLEKI 385
           +  + K   K V++   N  ++ + P LEK+
Sbjct: 407 LSILRKARVKVVEYEIANSKMADVQPALEKL 437


>gi|229824032|ref|ZP_04450101.1| hypothetical protein GCWU000282_01336 [Catonella morbi ATCC 51271]
 gi|229786386|gb|EEP22500.1| hypothetical protein GCWU000282_01336 [Catonella morbi ATCC 51271]
          Length = 447

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 130/395 (32%), Positives = 218/395 (55%), Gaps = 20/395 (5%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           L L+P +  A+   G+ + TP+Q   IP  L+  ++   +QTG+GK+ SF++P+   L+ 
Sbjct: 9   LELAPFIKEALGQLGFSRLTPVQEAVIPYALKGRNLIVQSQTGSGKSHSFLIPIFQQLDP 68

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKLERG- 122
              +V++   +I  P+RELA Q+    ++        L V   +GG   + Q  KL+ G 
Sbjct: 69  SLDQVQV---VITAPSRELATQLYQAAKQLASTSPEPLRVVHYMGGTDKQRQVDKLQAGQ 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGRI D      L +   +I+V+DEAD  +D+GF+  + +I S +P   Q ++
Sbjct: 126 PQVVIGTPGRIYDLMASHALHVQTAKIMVVDEADMTMDLGFLQVVDDIASRMPEDLQLMV 185

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +L+     ++ NP+ I++      A  I++  + T  +   + AL+  LL   
Sbjct: 186 FSATIPQQLEVFLNKYVTNPEFIQIEPQEVLASKIDNYLINTKGR--DRSALVYDLL--- 240

Query: 243 DTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            TM +    ++FCN KK    L   L+++G  V +IHG++  R R +++   K+   Q +
Sbjct: 241 -TMGHPFLALVFCNTKKYAAELTQCLKERGLKVASIHGDLTPRERKRVMRQIKDLEYQYV 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASDLAARG+DIP +  V N ++P   E ++HR+GRTGR    G A+T +  +D + I  
Sbjct: 300 VASDLAARGIDIPGISMVINTELPKELEFFVHRVGRTGRNQLAGTAYTFMTPDDDRAIVE 359

Query: 360 IE-KLIE-KKVDWLNGDL---SSLNPPLEKIDIAQ 389
           +E K I+ ++VD + G++    S +  LE+ D  Q
Sbjct: 360 LEAKGIDFQQVDLVKGEIRPVQSRHRRLERTDTKQ 394


>gi|254694921|ref|ZP_05156749.1| ATP-dependent RNA helicase DeaD [Brucella abortus bv. 3 str. Tulya]
 gi|261215256|ref|ZP_05929537.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 3 str.
           Tulya]
 gi|260916863|gb|EEX83724.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 3 str.
           Tulya]
          Length = 534

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 190/347 (54%), Gaps = 10/347 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEK- 65
           ++P +  A+   GY   T +Q   +       D+   AQTG+GKT +F L M  TILE  
Sbjct: 7   IAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMANTILEDE 66

Query: 66  ---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
              G A    P  +I+ PTRELA QV    E    +    +A  +GG+    + + LERG
Sbjct: 67  LRFGDAGA--PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALERG 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGR+ DH  R  L M+ +  +V+DEAD MLDMGF   ++ I    P  R+TL+
Sbjct: 125 SHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDRRTLM 184

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++++ F  N  RI V + +S    I++  +     + +  A++  LL   
Sbjct: 185 FSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPV-PPHERDHAIINTLLYYD 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +N IIFC+ ++ V ++   L  +GF+V A+ G + Q  R   L   ++G  ++ VA+
Sbjct: 244 S--QNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVAT 301

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+P++  V + D+P   +  +HR GRTGRAGR G    +V
Sbjct: 302 DVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVV 348


>gi|167536684|ref|XP_001750013.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771523|gb|EDQ85188.1| predicted protein [Monosiga brevicollis MX1]
          Length = 341

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 114/334 (34%), Positives = 182/334 (54%), Gaps = 11/334 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   ++  +   G+ KP+ +Q + I  +++  DV   AQ+GTGKTA+F +  L  
Sbjct: 10  FDALGLREDLLRGIYAYGFEKPSAVQQRAIKPIVKGRDVIAQAQSGTGKTATFSISALQT 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++      R  + L+L PTRELA Q+       G   ++     IGG       +KL+ G
Sbjct: 70  IDTTS---RETQVLVLSPTRELAVQIQKVMLALGDYMSVQCHACIGGTSVGEDIRKLDYG 126

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L   NI++L++DEAD ML+ GF   I +I   +P   Q +L
Sbjct: 127 QHIVSGTPGRVFDMIQRRNLRTRNIKMLILDEADEMLNQGFKDQIYDIYRYLPPATQVVL 186

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLL 239
            SAT+ +E+ +++  F+ +P RI V     T E I+  FVA   +   +   C L   L 
Sbjct: 187 LSATLPNEILEMTTKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL- 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  ++S F+ G+ +++
Sbjct: 246 ----TITQAVIFCNTKQKVDWLTEKMREANFTVSSMHGDMLQKDRNDVMSEFRAGSSRVL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
           + +D+ ARGLD+  V  V N+D+PN  E YIHRI
Sbjct: 302 ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRI 335


>gi|116205599|ref|XP_001228610.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|118572553|sp|Q2GMX1|HAS1_CHAGB RecName: Full=ATP-dependent RNA helicase HAS1
 gi|88176811|gb|EAQ84279.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 586

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 131/358 (36%), Positives = 204/358 (56%), Gaps = 21/358 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L LS K + ++ + G+ K T IQ + IP +L   DV G A+TG+GKT +F++P + +
Sbjct: 114 FSELNLSDKTMMSINEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 173

Query: 63  LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   R + R     +++ PTRELA Q+     +  KN++ T  ++IGG    A+  KL +
Sbjct: 174 LNSLRFKPRNGTGVIVVTPTRELALQIFGVARELMKNHSQTYGVVIGGANIRAEEDKLGK 233

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQT 180
           G ++LI TPGR+LDH  RG  +  N++ L+IDEADR+L++GF   +++I  ++P   RQT
Sbjct: 234 GVNLLIATPGRLLDHLRRGSFVFKNLKSLIIDEADRILEVGFEDEMRHIVKILPKENRQT 293

Query: 181 LLFSATMTDELQKVSENFLQ-NPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQ 237
           +LFSAT T +++ ++   L+  P  I V+     ST E ++  +V   A   K+  LL  
Sbjct: 294 MLFSATQTTKVEDLARISLRPGPLYINVDEEKQFSTVEGLDQGYVIVDA--DKRFLLLFS 351

Query: 238 LLQSQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF--- 291
            L+     K  I+F   CN  K    L   ++ Q   V  +HG   Q+ R      F   
Sbjct: 352 FLKKM-AKKKIIVFLSSCNSVKYYSELLQYIDLQ---VLDLHGKQKQQKRTNTFFEFCNA 407

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           K+GT   ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R G + K  +L+
Sbjct: 408 KQGT---LICTDVAARGLDIPQVDWIVQFDPPDDPRDYIHRVGRTAR-GNNTKGRSLL 461


>gi|315612843|ref|ZP_07887754.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis ATCC 49296]
 gi|315314953|gb|EFU62994.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis ATCC 49296]
          Length = 447

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 194/367 (52%), Gaps = 11/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +V A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKKFQFKNYIVEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   + ++ V ++  +GG     Q +K
Sbjct: 61  QQLDETSDSVQ---AVITAPSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L ++  +  VIDEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVIDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQ 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +  + +   L 
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQLT 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           QL+Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K    
Sbjct: 238 QLMQPYLAM----IFVNTKTRADELHAYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDF 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   
Sbjct: 294 EYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSD 353

Query: 357 IDAIEKL 363
           I  +EKL
Sbjct: 354 ILELEKL 360


>gi|157737362|ref|YP_001490045.1| putative ATP-dependent RNA helicase RhlE [Arcobacter butzleri
           RM4018]
 gi|157699216|gb|ABV67376.1| putative ATP-dependent RNA helicase RhlE [Arcobacter butzleri
           RM4018]
          Length = 351

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 111/287 (38%), Positives = 166/287 (57%), Gaps = 3/287 (1%)

Query: 76  LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           +IL PTRELA Q+    + Y K  ++    + GG+  + Q KKL  G D+L+ T GR+L+
Sbjct: 1   MILVPTRELATQIGKVIDDYAKYLDIKRLAIFGGVSSKEQEKKLSNGIDILVSTSGRLLE 60

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
           H     + ++++  +VIDE D MLDMGF+  ++ I   +   RQ ++FSAT+   ++K++
Sbjct: 61  HIKNKNVNLSSVTTVVIDEVDTMLDMGFLEDLEKILPNIGQNRQIMMFSATLNQNVKKLA 120

Query: 196 ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
           + FL +P  IEV    S+ + I+   V       KK  LL  L+ S++     ++F N K
Sbjct: 121 KEFLSDPVVIEVAKQRSSVKIIDQQIV--LVDEDKKAELLSYLIGSRN-YSQVLVFVNMK 177

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           K   +L   L   G     IHG+I Q +R K L  FK G I+++VA+D+AARG+DI  + 
Sbjct: 178 KEADDLVAHLNLDGLPAECIHGDIRQTARAKALRKFKSGDIRVLVATDIAARGIDIELLP 237

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
            V NF +P    +Y HRIGRTGRAG  G A TL++ +D K +  IEK
Sbjct: 238 VVVNFALPETITDYTHRIGRTGRAGNAGTAITLLSVKDYKFMIEIEK 284


>gi|156835836|ref|XP_001642179.1| hypothetical protein Kpol_165p1 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380610|sp|A7TTT5|DBP2_VANPO RecName: Full=ATP-dependent RNA helicase DBP2
 gi|156112620|gb|EDO14321.1| hypothetical protein Kpol_165p1 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 441

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 111/314 (35%), Positives = 177/314 (56%), Gaps = 11/314 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V   G+ KPT IQ +  P+ L   D+ G+A TG+GKT S+ LP +  
Sbjct: 115 FDEAGFPDYVLEEVKAEGFEKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVH 174

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                +L  G      P  L+L PTRELA Q+     K+G +  +  + + GG+P   Q 
Sbjct: 175 INAQPLLSPGDG----PIVLVLAPTRELAVQIQKECSKFGSSSRIRNSCVYGGVPRGQQI 230

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++L RGA+++I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 231 RELSRGAEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 290

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E+++++ ++L +P ++++ +   +A       V   + + K+  LL+
Sbjct: 291 DRQTLMWSATWPKEVKQLAHDYLNDPIQVQIGSLELSASHNITQLVEVVSDFEKRDRLLK 350

Query: 237 QL-LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L   S+D     ++F + K+    +   L + G+   AIHG+ DQR R  +L  F+EG 
Sbjct: 351 HLETASEDKDSKILVFASTKRTCDEVTKYLREDGWPALAIHGDKDQRERDWVLQEFREGR 410

Query: 296 IQLMVASDLAARGL 309
             +MVA+D+AARG+
Sbjct: 411 SPIMVATDVAARGI 424


>gi|311271296|ref|XP_001928807.2| PREDICTED: LOW QUALITY PROTEIN: nucleolar RNA helicase 2 [Sus
           scrofa]
          Length = 844

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 126/354 (35%), Positives = 197/354 (55%), Gaps = 19/354 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     PIQ KT   V    D+   A+TGTGKT SF +P++  
Sbjct: 249 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 308

Query: 63  LE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+   + R R R P+ L+L PTRELA+QV+ +F    K   L VA   GG P+  Q  ++
Sbjct: 309 LQGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKK--LAVACFYGGTPYGGQIDRM 366

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH    KL +  ++ +V+DE D+MLDMGF   ++ I   V + + 
Sbjct: 367 RNGIDILVGTPGRIKDHLQNNKLDLTKLKHVVLDEVDQMLDMGFADQVEEIL-CVAYKKD 425

Query: 179 -----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSK 230
                QTLLFSAT    +  V++ ++++  +++++       TA T+EH  +A    +++
Sbjct: 426 SEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEH--LAIKCHWTQ 483

Query: 231 KCALLQQLLQSQDTMKN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           + A++  +++     +   IIFC  KK    L  +   +     ++HG+I Q+ R   L 
Sbjct: 484 RAAVIGDVIRVYSGYQGRTIIFCETKKEAQELSQNAAVRQ-DAQSLHGDIPQKQREITLK 542

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
            F+ G   ++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 543 GFRNGDFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTG 596


>gi|225558597|gb|EEH06881.1| ATP-dependent RNA helicase DBP4 [Ajellomyces capsulatus G186AR]
          Length = 810

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 128/392 (32%), Positives = 212/392 (54%), Gaps = 26/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL LS      +    +   T IQ + IP  L+  D+ G A+TG+GKT +F++P+L +
Sbjct: 51  FSDLPLSEPTADGLSACHFKSLTDIQARAIPHALKGRDILGAAKTGSGKTLAFLVPLLEL 110

Query: 63  L-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  K          L+L PTRELA Q+ +   K G+++  +  L+IGG   + + ++L +
Sbjct: 111 LYRKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHTFSAGLVIGGKGLQEEQERLGK 170

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++      N+I++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 171 -MNILVCTPGRMLQHMDQTAAFDTNHIQLLVLDEADRIMDMGFQSTVDAIIDHLPKERQT 229

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVN--TPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +LFSAT T ++  ++   L++P+ + V+    S+T   ++  ++ T     +K   L   
Sbjct: 230 MLFSATQTKKVSDLARLSLRDPEYVSVHETAASATPAKLQQNYIIT--PLPEKLDTLWSF 287

Query: 239 LQSQDTMKNGII-FCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++S  ++K+ II F +  K V  +  S    + G  +  +HG   Q +R+ I   F    
Sbjct: 288 IRS--SLKSKIIVFFSSGKQVRFVYESFRHMRPGIPLLHLHGRQKQGARVDITKKFSAAK 345

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
              + A+D+AARGLD P V  V   D P  A+ YIHR GRT R  R+G+A   +  E  +
Sbjct: 346 YSCLFATDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFL--EPSE 403

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
               +++L +KK+            P+EKI++
Sbjct: 404 EAGMLKRLEQKKI------------PIEKINV 423


>gi|251795451|ref|YP_003010182.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
 gi|247543077|gb|ACT00096.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
          Length = 472

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 205/362 (56%), Gaps = 10/362 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVK-PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           + DLG++ K +   L+A  +K P+ IQ + IP +L+  DV   +QTG+GKT +++LPML 
Sbjct: 6   WNDLGIN-KALGDKLEANNIKVPSAIQAEAIPTLLEGRDVSARSQTGSGKTLAYLLPMLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     ++    +IL PT+ELA Q+    E Y +   L V  LIGG   + Q +KL+ 
Sbjct: 65  QLKPSSGAIQ---AIILAPTQELAMQIVRVAEGYAEPLGLRVQQLIGGAAMKRQIEKLKL 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRI +     KL ++++  +VIDEAD++ ++G    ++ I   +   RQ  
Sbjct: 122 RPQIVIGTPGRIHELLKLRKLKLSDVRHIVIDEADQVFELGSTREVETILFAMSQERQLA 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL-LQQLLQ 240
            FSAT  D + +    ++++  RI++      +ETI + +V    +     A  + ++L+
Sbjct: 182 FFSATYPDVMARFEGRWMKDTVRIQIAPEQRVSETINNFYVVCDKRDKPDAARRIVRMLK 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F N  +N+ N    L  +GFSV  ++G+ D++ R   L+ F+EG  QL++
Sbjct: 242 PE----SALLFLNVTENIANWEAKLSYEGFSVETLYGDSDKQRRAATLARFREGKTQLLL 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N D P  A++Y+HR GRTGR GR G   +L+  ++   +D  
Sbjct: 298 ATDVAARGLDIEGLQLVINLDPPIDADHYVHRAGRTGRMGRKGTVISLITPQERFIMDKF 357

Query: 361 EK 362
            K
Sbjct: 358 RK 359


>gi|212545060|ref|XP_002152684.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Penicillium marneffei
           ATCC 18224]
 gi|210065653|gb|EEA19747.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Penicillium marneffei
           ATCC 18224]
          Length = 498

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 120/362 (33%), Positives = 191/362 (52%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+F++P L
Sbjct: 45  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFIIPTL 104

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E+   +    + LIL PTRELA Q +   +  GK+  + V +  GG        +L 
Sbjct: 105 ---ERINPKSTKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRLN 161

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 162 DTVHIIVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 221

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  ++NP  I +     T   I   +   + +  +K   L  L  
Sbjct: 222 MLFSATFPMIVKSFKDKHMRNPYEINL-MDELTLRGITQYYA--FVEEKQKVHCLNTLF- 277

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 278 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLV 337

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 338 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKI 397

Query: 361 EK 362
           E+
Sbjct: 398 EQ 399


>gi|255719332|ref|XP_002555946.1| KLTH0H01562p [Lachancea thermotolerans]
 gi|238941912|emb|CAR30084.1| KLTH0H01562p [Lachancea thermotolerans]
          Length = 491

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 186/360 (51%), Gaps = 7/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++  + +AG+ KP+PIQ + IP+ +   DV   A+ GTGKTA+FV+P    
Sbjct: 31  FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPIAIAGRDVLARAKNGTGKTAAFVVP---T 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEK + +V   + LI+ PTRELA Q +      GK+  ++  +  GG        +L   
Sbjct: 88  LEKVKPKVNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNEP 147

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +L+ TPGR+LD  +R    ++   + V+DEAD+ML   F   I+ I + +P   Q+LL
Sbjct: 148 VHILVGTPGRVLDLASRKVADLSECPLFVMDEADKMLSRDFKAIIEQILTFLPPVHQSLL 207

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    +++     L  P  I +     T + I   +   + +  +K   L  L  S+
Sbjct: 208 FSATFPLTVKEFMVKHLHKPYEINL-MDELTLKGITQYY--AFVEERQKLHCLNTLF-SK 263

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   IIFCN    V  L   +   G+S    H  + Q  R K+   F++G ++ +V S
Sbjct: 264 LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQSERNKVFHEFRQGKVRTLVCS 323

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+   D  ++  IE+
Sbjct: 324 DLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQ 383


>gi|241148964|ref|XP_002405951.1| ATP-dependent helicase (DEAD box), putative [Ixodes scapularis]
 gi|215493784|gb|EEC03425.1| ATP-dependent helicase (DEAD box), putative [Ixodes scapularis]
          Length = 685

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 123/389 (31%), Positives = 197/389 (50%), Gaps = 40/389 (10%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRARVRMPR 74
           Y  PT IQ +  P+ L   D+ GIAQTG+GKT +++LP +        L++G      P 
Sbjct: 135 YTTPTAIQSQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHITHQPYLQRGDG----PM 190

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER------------- 121
            L+L PTRELA Q+      +GK   +    + GG P  +Q +                 
Sbjct: 191 ALVLAPTRELAQQIQQVAADFGKASRIRNTCVFGGAPKGSQLRDWREFGALCPASVAVVQ 250

Query: 122 ------------GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                       G ++ I TPGR++D    GK+ +     LV+DEADRMLDMGF P I+ 
Sbjct: 251 RNSQVIVVICRAGVEICIATPGRLIDFLEAGKVNLRRCTYLVLDEADRMLDMGFEPQIRK 310

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I   +    QTL++SAT   E++ ++E+FL++  ++ +      A       V    +  
Sbjct: 311 IVEQIRPDCQTLMWSATWPKEVRSLAEDFLKDYIQVNIGALQLCANHRIVQIVDVCQESD 370

Query: 230 KKCALLQ---QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           K+  L++   +++  QD     +IF   KK V  L   + + G+    IHG+  Q  R  
Sbjct: 371 KENKLMELHKEIINEQDNKT--LIFAETKKKVDELTRRMRRNGWPSICIHGDKSQSERDW 428

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
           +L+ F+ G   ++VA+D+AARGLD+ D+  V N+D P+ +E+YIHRIGRT R+ + G A+
Sbjct: 429 VLNEFRSGRSPILVATDVAARGLDVDDIRFVINYDYPHCSEDYIHRIGRTARSNKTGTAY 488

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDL 375
           T     ++K    +  ++++    +N  L
Sbjct: 489 TFFTPGNMKQAKELIAVLKEANQAINPKL 517


>gi|118582182|sp|Q0U7S9|DHH1_PHANO RecName: Full=ATP-dependent RNA helicase DHH1
          Length = 522

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 119/362 (32%), Positives = 191/362 (52%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 49  LEFEDFFIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 108

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E+   ++   + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 109 ---ERVNPKISKTQALILVPTRELALQTSQVCKTLGKHLGINVMVSTGGTGLKDDIIRLS 165

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +G   ++  +  V+DEAD++L   F P ++ +    P  RQ 
Sbjct: 166 DPVHIIVGTPGRILDLAGKGVADLSTCQTFVMDEADKLLSPEFTPVVEQLLGFHPKDRQV 225

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  + +P  I +     T   I   +   + +  +K   L  L  
Sbjct: 226 MLFSATFPIVVKTFKDKHMNSPYEINL-MDELTLRGITQYYA--FVEEKQKVHCLNTLF- 281

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 282 NKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLV 341

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 342 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYRI 401

Query: 361 EK 362
           E+
Sbjct: 402 EQ 403


>gi|68071941|ref|XP_677884.1| eukaryotic initiation factor [Plasmodium berghei strain ANKA]
 gi|56498165|emb|CAH98223.1| eukaryotic initiation factor, putative [Plasmodium berghei]
          Length = 390

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 122/376 (32%), Positives = 195/376 (51%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G+   ++  +   G+ +P+ IQ + I  +L   DV   +Q+GTGKT  F +  L  
Sbjct: 19  FESIGIDEGLLRGIYAYGFDRPSAIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGALNC 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + +     ++   +IL PTRELA Q            ++TV   IGG       K L  G
Sbjct: 79  VNRNLNETQI---IILSPTRELAEQTQKVCLALADYIHVTVYCCIGGKKLSDDIKALNNG 135

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGRI    N   L    I+ LVIDEAD ML+ GF   + +I   +    Q +L
Sbjct: 136 VHIISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPNTQIVL 195

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  E+ +++  F+ NP +I V     T E I+  F++   +   K   L  L +S 
Sbjct: 196 SSATLPHEVLEITNKFMHNPVKILVKRDELTLEGIKQFFISIEKE-QWKYETLADLYESL 254

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   ++FCN K  V  L   +++  F+VC +H  + Q  R  I+  F++   ++++++
Sbjct: 255 -TITQAVVFCNTKLKVDWLAKKMQESNFTVCKMHAGMSQSERDDIMLKFRQCKYRVLIST 313

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+  RGLD+ +V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +  IE+
Sbjct: 314 DIWGRGLDVHEVSLVVNYDLPNSRECYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQ 373

Query: 363 LIEKKVDWLNGDLSSL 378
               ++D +  +++ L
Sbjct: 374 FYSTQIDEMPMNITEL 389


>gi|159043402|ref|YP_001532196.1| DEAD/DEAH box helicase domain-containing protein [Dinoroseobacter
           shibae DFL 12]
 gi|157911162|gb|ABV92595.1| DEAD/DEAH box helicase domain protein [Dinoroseobacter shibae DFL
           12]
          Length = 730

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 119/362 (32%), Positives = 191/362 (52%), Gaps = 14/362 (3%)

Query: 18  DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF---VLPMLTILEKGRARVRMPR 74
           D GY   TP+QI      L   D+   AQTG+GKT +F   + P L            P 
Sbjct: 14  DKGYDTLTPVQIAVSDPALVEADLLVSAQTGSGKTVAFGLAIAPTLLADAAAFGPAAAPL 73

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L++ PTRELA QV    E         +   +GG+    + + L RGA V++ TPGR+ 
Sbjct: 74  GLVIAPTRELAMQVRRELEWLYGPAGAQITSCVGGMDARDERRALGRGAHVVVATPGRLR 133

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           DH  RG + ++ +  +V+DEAD MLD+GF   ++ I    P  R+TL+FSAT+   +  +
Sbjct: 134 DHIERGNIDLDAVRAVVLDEADEMLDLGFREDLEFILGAAPSERRTLMFSATVPPAIASL 193

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY----SKKCALLQQLLQSQDTMKNGII 250
           ++ + ++ +RI     S+ AET +H  +A  A       ++ A++  L   +    N I+
Sbjct: 194 AQLYQKDARRI-----STRAETRQHADIAYRAMVVGPRDEENAIINVLRYYE--AANAIV 246

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           FCN +  V  L      +GF V A+ G + Q  R   L   ++G  Q+ VA+D+AARG+D
Sbjct: 247 FCNTRAMVNRLTTRFSNRGFQVVALSGELTQSERTHALQAMRDGRAQVCVATDVAARGID 306

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           +P++  V + ++P+ ++  +HR GRTGRAGR G +  +V  +  K  + + K  +   DW
Sbjct: 307 LPNLELVVHAELPSSSDTLLHRSGRTGRAGRKGVSAVIVPVKFRKKAERLLKWAKVTPDW 366

Query: 371 LN 372
           ++
Sbjct: 367 VS 368


>gi|321250140|ref|XP_003191703.1| hypothetical protein CGB_A8530W [Cryptococcus gattii WM276]
 gi|317458170|gb|ADV19916.1| Hypothetical protein CGB_A8530W [Cryptococcus gattii WM276]
          Length = 860

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 134/390 (34%), Positives = 200/390 (51%), Gaps = 33/390 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L +S K    +  + ++ PTPIQ   IP  LQ  D+ G A+TG+GKT +F++P+L  
Sbjct: 62  FSELPMSSKTQKGLKSSHFLNPTPIQSLAIPPALQARDILGSAKTGSGKTLAFLIPLLER 121

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LEK      +   +++ PTRELA Q        GK +N +  L+IGG P + + ++L 
Sbjct: 122 LYLEKWGPMDGL-GAVVISPTRELAVQTFMQLRDIGKYHNFSAGLVIGGKPLKEEQERLG 180

Query: 121 RGADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITS-LVPF-- 176
           R  ++LI TPGR+L H +       + +++LV+DEADR+LD+GF+P ++ I S   P   
Sbjct: 181 R-MNILIATPGRLLQHLDSTVGFDPSAVKVLVLDEADRLLDLGFLPALKAIVSHFSPVQT 239

Query: 177 ------TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY-- 228
                 +RQTLLFSAT + +L  +++  L  P  I  N P       E    A   QY  
Sbjct: 240 APGSRPSRQTLLFSATQSKDLAALAKLSLHEPLYISCNKPGE-----EGVMPANLEQYYA 294

Query: 229 ----SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK-----QGFSVCAIHGNI 279
                +K   L   ++S   MK GI+F    K V  +    E       G  +  +HG  
Sbjct: 295 VVPLERKLDALWGFVKSHLKMK-GIVFVTSGKQVRQVRFIFETFRRLHPGLPLMHLHGKQ 353

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q +R+ I   F      L++ +D+AARGLD P V  V   D P+  + YIHR+GRT R 
Sbjct: 354 KQPTRLDIFQRFSSSKSALLICTDVAARGLDFPAVDWVIQLDCPDDVDTYIHRVGRTARY 413

Query: 340 GRHGKAFTLVAKEDIKHIDAI--EKLIEKK 367
              G A T++   + + + A   EK IE K
Sbjct: 414 QSAGTALTILCPSEEEGMKARWGEKAIEVK 443


>gi|291404256|ref|XP_002718616.1| PREDICTED: nucleolar protein GU2-like [Oryctolagus cuniculus]
          Length = 780

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 129/355 (36%), Positives = 200/355 (56%), Gaps = 21/355 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  +S + +  +   G     P+Q KT   V    D+   A+TGTGKT SF +P++  
Sbjct: 186 FSNFPISEETIKLLKARGVTFLFPVQAKTFHHVYSGRDLIAQARTGTGKTFSFAIPLIEK 245

Query: 63  LE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+   + R R R P+ L+L PTRELA QV+ +F    K   L VA   GG P+  Q +++
Sbjct: 246 LQGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKK--LAVACFYGGTPYGNQIERM 303

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G D+L+ TPGRI DH   GKL ++ ++ +V+DE D+MLDMGF   +++I   V + + 
Sbjct: 304 RNGIDILVGTPGRIKDHLENGKLDLSKLKHVVLDEVDQMLDMGFADQVEDILK-VAYKKD 362

Query: 179 -----QTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSK 230
                QTLLFSAT    +  V++ +++   +++++       TA T+EH  +A    +S+
Sbjct: 363 SEDNPQTLLFSATCPHWVFNVAKKYMKATYEQVDLIGKKTQKTAITVEH--LAIKCHWSQ 420

Query: 231 KCALLQQLLQSQDTMKN-GIIFCNQKKNVVNLCH-SLEKQGFSVCAIHGNIDQRSRMKIL 288
           + A++  +++     +   I+FC  KK    L   S  KQ     ++HG+I Q+ R   L
Sbjct: 421 RAAVIGDVIRVYSGHQGRTIVFCETKKEAQELSQNSSIKQ--DAQSLHGDIPQKQREITL 478

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
             F+ G   ++VA+++AARGLDIP+V  V     P   E+YIHR GRTGRAGR G
Sbjct: 479 KGFRNGDFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTG 533


>gi|159474578|ref|XP_001695402.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158275885|gb|EDP01660.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 390

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 125/354 (35%), Positives = 185/354 (52%), Gaps = 7/354 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D      V+  +  + Y  P+ IQ +  P+ L   DV  IA TG+GKT  ++LP L  
Sbjct: 12  FEDAAFPEGVMQVLRSSRYGAPSAIQAQAWPIALAGRDVVAIASTGSGKTLGYLLPALVQ 71

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I  +G      P  L+L PTRELA Q        G   +L    L GG   E Q   L  
Sbjct: 72  IQARGGDPALGPSALVLAPTRELAKQHQPQPAAPG---SLRSVCLYGGASREEQLAALRT 128

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LD    G + +  +  LV+DEADRMLDMGF P I+++   +P  RQTL
Sbjct: 129 RPHLVIATPGRLLDFVEAGMIRLGQVSYLVLDEADRMLDMGFEPQIRDVVRALPPGRQTL 188

Query: 182 LFSATMTDELQKVSENFL--QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            FSAT   E++  + +F   Q P ++ +      A T     VA   + + K A L+  L
Sbjct: 189 FFSATWPAEVRAAAASFAASQRPVQVFIGDAKPVAATSIRQRVAVV-EAADKVATLEAYL 247

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q   +      +   +  +     +++  +  ++HG+  Q +R   L NF+ G + ++
Sbjct: 248 REQLLGEGPEAGADADADAEDAPPPAKRRALAAASLHGDKTQAARDYALHNFRNGRVPVL 307

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+AARGLDIP V  V NFD+PN  ++Y+HRIGRTGRAG  G++  ++   D
Sbjct: 308 VATDVAARGLDIPHVTAVANFDMPNDIDSYVHRIGRTGRAGAAGESLAILTHRD 361


>gi|194216574|ref|XP_001490317.2| PREDICTED: similar to Eukaryotic initiation factor 4A-III
           (Eukaryotic translation initiation factor 4A isoform 3)
           (ATP-dependent RNA helicase eIF4A-3) (ATP-dependent RNA
           helicase DDX48) (DEAD box protein 48) (Eukaryotic
           initiation factor 4A-like NUK-34) (Nucl [Equus caballus]
          Length = 375

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 119/376 (31%), Positives = 192/376 (51%), Gaps = 41/376 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  
Sbjct: 40  FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ G
Sbjct: 100 LD---IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +L
Sbjct: 157 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  E+ +++  F+ +P RI V                      K+   +  L    
Sbjct: 217 ISATLPHEILEMTNKFMTDPIRILV----------------------KRFYYIHPLFDPV 254

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D                 L   + +  F+V ++HG++ Q+ R  I+  F+ G  ++++++
Sbjct: 255 DW----------------LTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIST 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE+
Sbjct: 299 DVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQ 358

Query: 363 LIEKKVDWLNGDLSSL 378
               ++D +  +++ L
Sbjct: 359 YYSTQIDEMPMNVADL 374


>gi|218184840|gb|EEC67267.1| hypothetical protein OsI_34232 [Oryza sativa Indica Group]
          Length = 524

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 194/361 (53%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 151 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 210

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  +++   +IL PTRELA Q +   ++ GK  N+ V +  GG   +    +L +
Sbjct: 211 KIDPEKNAIQV---VILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQ 267

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P I+ +   +P  RQ L
Sbjct: 268 PVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLLAPEFQPSIEQLIHFLPANRQLL 327

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++   E +L  P  I +    +     ++     + +  +K   L  L  S
Sbjct: 328 MFSATFPVTVKDFKEKYLPRPYVINLMDELTLKGITQY---YAFVEERQKVHCLNTLF-S 383

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 384 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 443

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 444 TDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 503

Query: 362 K 362
           +
Sbjct: 504 Q 504


>gi|143360935|sp|Q109G2|RH12_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 12
 gi|10140782|gb|AAG13612.1|AC078840_3 putative RNA helicase [Oryza sativa Japonica Group]
 gi|110289357|gb|ABB47852.2| ATP-dependent RNA helicase ste13, putative, expressed [Oryza sativa
           Japonica Group]
 gi|215706425|dbj|BAG93281.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222613101|gb|EEE51233.1| hypothetical protein OsJ_32082 [Oryza sativa Japonica Group]
          Length = 521

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 194/361 (53%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 148 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 207

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  +++   +IL PTRELA Q +   ++ GK  N+ V +  GG   +    +L +
Sbjct: 208 KIDPEKNAIQV---VILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQ 264

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P I+ +   +P  RQ L
Sbjct: 265 PVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLLAPEFQPSIEQLIHFLPANRQLL 324

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++   E +L  P  I +    +     ++     + +  +K   L  L  S
Sbjct: 325 MFSATFPVTVKDFKEKYLPRPYVINLMDELTLKGITQY---YAFVEERQKVHCLNTLF-S 380

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 381 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 440

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 441 TDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 500

Query: 362 K 362
           +
Sbjct: 501 Q 501


>gi|258564346|ref|XP_002582918.1| eukaryotic initiation factor 4A-6 [Uncinocarpus reesii 1704]
 gi|237908425|gb|EEP82826.1| eukaryotic initiation factor 4A-6 [Uncinocarpus reesii 1704]
          Length = 398

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 129/376 (34%), Positives = 209/376 (55%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L  +++  V   G+ +P+ IQ + I  V++  DV   AQ+GTGKTA+F    ++ 
Sbjct: 27  FDAMNLRSELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATF---SISA 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    ++  + LIL PTRELA Q+       G   ++     IGG       K L  G
Sbjct: 84  LQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSIECHACIGGTSVRDDMKALSDG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I  L+P + Q +L
Sbjct: 144 PQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++  V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 204 LSATMPQDVLDVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A+
Sbjct: 263 -TITQAVIFCNTRRKVDWLTDKLIARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIAT 321

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 322 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 381

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 382 FYSTQIEEMPMNVADL 397


>gi|213407104|ref|XP_002174323.1| ATP-dependent RNA helicase dhh1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212002370|gb|EEB08030.1| ATP-dependent RNA helicase dhh1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 498

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 118/360 (32%), Positives = 188/360 (52%), Gaps = 7/360 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + +AG+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+FV+P L 
Sbjct: 46  EFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALAGRDILARAKNGTGKTAAFVIPSLE 105

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +++++   TLIL PTRELA Q +   +  GK+ N+ V +  GG        +L  
Sbjct: 106 KVDTKKSKIQ---TLILVPTRELALQTSQVCKTLGKHMNVNVMVTTGGTTLRDDIIRLNE 162

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LD   +G    +     V+DEAD++L   F P I+ + +  P  RQ  
Sbjct: 163 PVHIVVGTPGRVLDLAGKGVADFSECSNFVMDEADKLLSPEFTPIIEQLLTHFPKNRQIS 222

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    ++   +  L  P  I +    +     ++     +    +K   L  L  S
Sbjct: 223 LYSATFPLLVKSFMDKHLNKPYEINLMDELTLRGVTQY---YAFVDERQKVHCLNTLF-S 278

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S    H  + Q  R ++  NF+ G  + +V 
Sbjct: 279 KLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVC 338

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A + ++ ED  ++  IE
Sbjct: 339 SDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWEDRFNLYKIE 398


>gi|328767833|gb|EGF77881.1| hypothetical protein BATDEDRAFT_20569 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 422

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 121/361 (33%), Positives = 190/361 (52%), Gaps = 9/361 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + +AG+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+FV+P   
Sbjct: 48  EFEDYFLKRELLMGIFEAGFERPSPIQEESIPIALAGRDILARAKNGTGKTAAFVIP--- 104

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEK   +    + L+L PTRELA Q +   +  GK+ N+ V +  GG   +    +L +
Sbjct: 105 VLEKINIQKSHIQALLLVPTRELALQTSQVCKLLGKHMNVQVMVSTGGTTLKDDILRLGQ 164

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD   RG   ++  +  V+DEAD++L   F P I+ + +    +RQ  
Sbjct: 165 TVHILVATPGRVLDLAGRGIANLSQCQTFVMDEADKLLSPEFAPIIEQLIAFCHKSRQIF 224

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++   + FLQ P  I +    +     ++     Y +  +K   L  L  S
Sbjct: 225 LFSATFPMMVKTFKDKFLQKPYEINLMDELTLHGVTQY---YAYVEERQKVHCLNTLF-S 280

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 281 KLQINQSIIFCNSTSRVELLARKITELGYSCFYIHARMMQSHRNRVFHDFRSGKTRHLVY 340

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
             L  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D   +  IE
Sbjct: 341 --LLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYDDRFSLYKIE 398

Query: 362 K 362
           +
Sbjct: 399 Q 399


>gi|156386665|ref|XP_001634032.1| predicted protein [Nematostella vectensis]
 gi|156221110|gb|EDO41969.1| predicted protein [Nematostella vectensis]
          Length = 643

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 127/375 (33%), Positives = 206/375 (54%), Gaps = 18/375 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F+D  +S + +  ++ AG+V PT IQ + IP+ L   DV G A+TG+GKT +F++P++ T
Sbjct: 52  FSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPIIET 111

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  +    +     L++ PTRELA Q  +   K G  ++L+  L+IGG   + + K++ +
Sbjct: 112 LWRQKWTSMDGLGALVISPTRELAYQTFEVLVKIGNKHDLSAGLIIGGKDLKNEQKRIMK 171

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++++CTPGR+L H +        +++ILV+DEADR+LDMGF P +  I   +P  RQT
Sbjct: 172 -TNIVVCTPGRLLQHMDETPNFDCTSLQILVLDEADRILDMGFAPTLNAIIENLPSERQT 230

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQL 238
           LL+SAT T  ++ ++   LQ P  I  +  S  ST   +   +V    +   K   L   
Sbjct: 231 LLYSATQTRSVKDLARLSLQEPTYISAHEKSDTSTPNRLTQSYVV--CELPDKLNFLFSF 288

Query: 239 LQSQDTMKNGIIF----CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +++   +K+ I+     C Q K +      L+  G  + A++G   Q  R+ I   F + 
Sbjct: 289 IRNH--LKSKILVFVSSCKQVKFIYEGFRRLQP-GIPLMALYGKQKQLKRVAIYDEFCKK 345

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA-FTLVAKED 353
           T  ++ A+D+AARGLD P V  V   D P  A  YIHR GRT R  + G++   L+  E+
Sbjct: 346 TQCVLFATDIAARGLDFPAVNWVIQLDCPEDANTYIHRAGRTARYQKDGQSLLVLLPSEE 405

Query: 354 IKHIDAIEKLIEKKV 368
            + I A++   +KKV
Sbjct: 406 QEMIKALK---DKKV 417


>gi|46138553|ref|XP_390967.1| hypothetical protein FG10791.1 [Gibberella zeae PH-1]
 gi|91206578|sp|Q4HW67|DHH1_GIBZE RecName: Full=ATP-dependent RNA helicase DHH1
          Length = 486

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 118/362 (32%), Positives = 191/362 (52%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +  L   ++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 42  LEFENFALKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVIPTL 101

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E+   ++   + LIL PTRELA Q +   +  GK+  + V +  GG        +L+
Sbjct: 102 ---ERINPKISKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIIRLQ 158

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +    ++   + ++DEAD++L + F P I+ +    P  RQ 
Sbjct: 159 DPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQV 218

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++  S+  + +P  I +     T   I   +   + +  +K   L  L  
Sbjct: 219 MLFSATFPLSVKDFSDKNMVSPYEINL-MDELTLRGITQYY--AFVEEKQKVHCLNTLF- 274

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 275 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMQQHARNRVFHDFRNGVCRNLV 334

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 335 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNI 394

Query: 361 EK 362
           E+
Sbjct: 395 ER 396


>gi|323305660|gb|EGA59400.1| Dhh1p [Saccharomyces cerevisiae FostersB]
          Length = 506

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 121/360 (33%), Positives = 188/360 (52%), Gaps = 7/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++  + +AG+ KP+PIQ + IP+ +   D+   A+ GTGKTA+FV+P L  
Sbjct: 48  FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL-- 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            EK + ++   + LI+ PTRELA Q +      GK+  ++  +  GG        +L   
Sbjct: 106 -EKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNET 164

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +L+ TPGR+LD  +R    +++  + ++DEAD+ML   F   I+ I S +P T Q+LL
Sbjct: 165 VHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLL 224

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    +++        P  I +     T + I   +   + +  +K   L  L  S+
Sbjct: 225 FSATFPLTVKEFMVKHQHKPYEINL-MEELTLKGITQYYA--FVEERQKLHCLNTLF-SK 280

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   IIFCN    V  L   +   G+S    H  + Q+ R K+   F++G ++ +V S
Sbjct: 281 LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS 340

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+   D  ++  IE+
Sbjct: 341 DLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQ 400


>gi|15902714|ref|NP_358264.1| ATP-dependent RNA helicase [Streptococcus pneumoniae R6]
 gi|116516888|ref|YP_816157.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae D39]
 gi|168492910|ref|ZP_02717053.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC3059-06]
 gi|182683681|ref|YP_001835428.1| DEAD-box ATP dependent DNA helicase [Streptococcus pneumoniae
           CGSP14]
 gi|221231556|ref|YP_002510708.1| helicase [Streptococcus pneumoniae ATCC 700669]
 gi|303260226|ref|ZP_07346197.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|303264099|ref|ZP_07350020.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae BS397]
 gi|15458257|gb|AAK99474.1| ATP-dependent RNA helicase [Streptococcus pneumoniae R6]
 gi|116077464|gb|ABJ55184.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae D39]
 gi|182629015|gb|ACB89963.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           pneumoniae CGSP14]
 gi|183576996|gb|EDT97524.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC3059-06]
 gi|220674016|emb|CAR68529.1| putative helicase [Streptococcus pneumoniae ATCC 700669]
 gi|302638550|gb|EFL69014.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|302646504|gb|EFL76730.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae BS397]
          Length = 447

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 194/368 (52%), Gaps = 13/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   + ++ V ++  +GG     Q +K
Sbjct: 61  QQLDEASDSVQ---AVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           LE     ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ- 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T   + K   + Q 
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKG-HDKNAQIYQL 236

Query: 237 -QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            QL+Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  +   
Sbjct: 237 TQLMQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLD 292

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D  
Sbjct: 293 FEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDS 352

Query: 356 HIDAIEKL 363
            I  +EKL
Sbjct: 353 DIRELEKL 360


>gi|255942321|ref|XP_002561929.1| Pc18g00830 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586662|emb|CAP94307.1| Pc18g00830 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 520

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 122/381 (32%), Positives = 205/381 (53%), Gaps = 17/381 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L ++P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F +P++  
Sbjct: 92  FAELDVAPWLVSSLATMAIKRPTAIQKACIPEILKGKDCIGGSRTGSGKTMAFAVPIMQQ 151

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             +    +     L+L PTRELA Q+ + F       N+   L++GG+    Q  +L   
Sbjct: 152 WARNPFGIY---ALVLTPTRELALQIYEQFRAVSAPQNMKPILVVGGMDMRQQAIELASR 208

Query: 123 ADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSLVP 175
             V+I TPGR+ DH           +  ++++V+DEADR+L  G    +P ++     +P
Sbjct: 209 PHVVIATPGRLADHIKTSGEDTVAGLRRVKMVVLDEADRLLASGPGSMLPDVETCLGALP 268

Query: 176 FT--RQTLLFSATMTDELQ--KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ--YS 229
            +  RQTLLF+ATMT E++  K        P        +     I      TY +   +
Sbjct: 269 PSAERQTLLFTATMTAEVRALKSMPAAGNKPPIFMTEIGTENQGKIPPTLKQTYLKVPMT 328

Query: 230 KKCALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            + A L  LL ++ +  K  I+FCN  K    L  +L + G  + ++H  + Q  R   L
Sbjct: 329 HREAFLHALLSTEVNVTKPVIVFCNHTKTCDLLERTLRRLGHRITSLHSILPQSERTANL 388

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           + F+    +++VA+D+A+RGLDIP V  V N++VP   ++Y+HR+GRT RAGR G+A TL
Sbjct: 389 ARFRATAARVLVATDVASRGLDIPSVELVINYEVPRNPDDYVHRVGRTARAGRSGEATTL 448

Query: 349 VAKEDIKHIDAIEKLIEKKVD 369
           + + D++ + AIE+ + ++++
Sbjct: 449 IGQRDVELVLAIEERVGRQME 469


>gi|319892614|ref|YP_004149489.1| ATP-dependent RNA helicase YqfR [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162310|gb|ADV05853.1| ATP-dependent RNA helicase YqfR [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464348|gb|ADX76501.1| ATP-dependent RNA helicase [Staphylococcus pseudintermedius ED99]
          Length = 444

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 125/382 (32%), Positives = 201/382 (52%), Gaps = 15/382 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        ++ A+    + +PT IQ + IP ++++ ++ G +QTGTGK+ +F+LP+   
Sbjct: 6   FDQFRFDSTLIEAITALNFKQPTEIQQRVIPKIMKQVNLIGQSQTGTGKSHAFLLPLFQQ 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           ++     +  P+++I+ PTRELA Q+   A    +Y     + V+L IGG  FE   +K 
Sbjct: 66  ID---PEIHEPQSIIVAPTRELATQLYQAATQLSEY--KTGIKVSLFIGGTDFEKDKQKT 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++I TP RI D    G L ++    LVIDEAD M+D+G I  +  I + +    +
Sbjct: 121 TVQPQLIIGTPTRINDLAKIGALHVHLAHYLVIDEADLMIDLGLIEEVDQIAAKLDDDAK 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQL 238
             +FSAT+   L      +L++P+ +EV + +   ++IE   + T  +Q  +K   L ++
Sbjct: 181 MAVFSATIPKSLHPFLNKYLEHPEFVEVKSETKNKKSIEFYLIPTKGSQKIEKAVALFEM 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L         IIFCN + +   L + L+ QG  V  IHG +  R R + +   +    Q 
Sbjct: 241 LNPY----LAIIFCNSRDSANQLANELQHQGIQVGMIHGGLTPRERKQQMKRIRNLEFQY 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ASDLA+RG+DI  V HV NFDVP   + + HR+GRTGR    G A TL   E+   I 
Sbjct: 297 VIASDLASRGIDIEGVSHVINFDVPKDIDFFTHRVGRTGRGNYKGVAITLYTPEEDGLIA 356

Query: 359 AIEK--LIEKKVDWLNGDLSSL 378
           AIE    + + VD  +G+   +
Sbjct: 357 AIENKGYLFENVDIKDGEFKPI 378


>gi|110004388|emb|CAK98726.1| probable atp-binding rna helicase protein [Spiroplasma citri]
          Length = 460

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 121/371 (32%), Positives = 203/371 (54%), Gaps = 11/371 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F   G    +   + +  +V+PT +Q K +PL+L+  +V   A TGTGKT +F LP+L 
Sbjct: 3   NFNQFGFKRFLNLGLAELNFVEPTIVQEKVMPLLLKHQNVICKAHTGTGKTFAFCLPILN 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120
            +   + +++    +I+ PTRELA Q+ DN   + K   NL V   IGG   + Q ++L+
Sbjct: 63  NINYEQVKIQ---AIIVTPTRELAKQIYDNIRFFKKFEPNLQVNYFIGGEDIKRQIEQLQ 119

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           R    ++I TP R+ D F +  L +  +   +IDE D + D+GFI  +  I S V    Q
Sbjct: 120 RTQPHIIIATPTRLKDSFEQQSLNLGKLTTFIIDECDMLFDLGFIENVDYILSKVNSNVQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +FSAT+  EL+     +L+NP  +++N    T + I H  + T  ++ ++  +L +LL
Sbjct: 180 VSVFSATIPHELKPFLIKYLKNPHYLDLNANQLTNQNITHILIPT--KHQERETILLKLL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++ D     +IF N+K ++      L +  +SV  +H  ++ R R K++   +    + +
Sbjct: 238 KTFDPYL-CLIFVNKKTDINKYYDLLLEHNYSVAQLHAGLEPRLRTKVVKRIRNLEYKYV 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +ASD+AARG+D   V HV + D+PN  E Y HR GRTGRA   G ++ L    D K++  
Sbjct: 297 IASDIAARGIDFIGVSHVISIDLPNDLEYYTHRSGRTGRANYTGYSYVLY---DTKNLTL 353

Query: 360 IEKLIEKKVDW 370
           +++LI K + +
Sbjct: 354 VQQLISKGITF 364


>gi|323448800|gb|EGB04694.1| hypothetical protein AURANDRAFT_70381 [Aureococcus anophagefferens]
          Length = 544

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 131/392 (33%), Positives = 204/392 (52%), Gaps = 30/392 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F +  +   V+  V+  G+ +P+PIQ +  P+ L   D+ GI++TG+GKT +F+LP M+ 
Sbjct: 151 FEEASMPDYVLTEVMKQGFKEPSPIQAQGWPMALLGRDMIGISRTGSGKTLAFLLPGMIH 210

Query: 62  I-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           I     L+ G      P  L+L PTRELA Q+    +K+G +  +    + GG P   Q 
Sbjct: 211 INAQPYLQPGDG----PIVLVLAPTRELAVQIKVECDKFGASSQIKNTCVYGGAPKRTQT 266

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG +++I TPGR++D    G   +  +  LV+DEADRMLDMGF P ++ I S +  
Sbjct: 267 GDLQRGVEIVIATPGRLIDFLESGVTNLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRP 326

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY---AQYSKKCA 233
            RQTL++SAT   E++ ++ +FL++  ++ V +   +A      +V      A+Y +   
Sbjct: 327 DRQTLMWSATWPKEVRNMANDFLKDFYQVTVGSLELSANKDITQYVECVDDGAKYRRMTD 386

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L++     D M   I+F   K+    L  SL  +GF    IHG+  Q  R  +L+ F+ 
Sbjct: 387 FLKE--HGVDKM---IVFVETKRGCDQLSRSLAHEGFPARCIHGDKAQDERDWVLNEFRS 441

Query: 294 GTIQLMVASDLAARGLDIPDVGH----VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           G   L+VA+D A R             V NFD P+  E+Y+HRIGR GRAG+ G A +  
Sbjct: 442 GKCPLLVATDRAPRARARLTARLRRRMVVNFDFPSNLEDYVHRIGRCGRAGQKGTALSFF 501

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
            ++  K    + K++        GD     PP
Sbjct: 502 TQKSSKWASGLCKIL--------GDAGQKIPP 525


>gi|294635763|ref|ZP_06714224.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda ATCC 23685]
 gi|291090902|gb|EFE23463.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda ATCC 23685]
          Length = 339

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 120/322 (37%), Positives = 185/322 (57%), Gaps = 9/322 (2%)

Query: 3   FADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA+L  LS + +  + + GY   TP+Q  T+P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 25  FAELNALSAEQLNNLKELGYQTMTPVQAATLPAILAGKDVRAQAKTGSGKTAAFGLGLLQ 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++  +    + ++L+L PTRELA QVA+      +   N+ V  L GG+PF  Q   L 
Sbjct: 85  HIDASQF---ITQSLVLCPTRELADQVANALRNLARCIPNIKVLTLCGGLPFSVQRNSLT 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +  + +  ++ LV+DEADRMLDMGF   +  + +  P  RQT
Sbjct: 142 HAPHIIVATPGRLLDHLQKETVSLAALQTLVLDEADRMLDMGFAEALDEVIAWAPEKRQT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +  +S    ++P  IE++T  +    +E  F       S K  LLQ LL 
Sbjct: 202 LLFSATWPSAIAAISRRIQRDPLSIEIDTVDAL-PAVEQRFYEV--ARSAKLGLLQTLL- 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN KK+   +  +L   G SV  +HG+++QR R + L  F  G+ +++V
Sbjct: 258 SQYQPASCVVFCNTKKDCQAVGDALNDAGQSVLVLHGDMEQRERDQTLVRFANGSSRVLV 317

Query: 301 ASDLAARGLDIPDVGHVFNFDV 322
           A+D+AARGLDI  +  V N+++
Sbjct: 318 ATDVAARGLDIKALEMVINYEL 339


>gi|167533981|ref|XP_001748669.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772910|gb|EDQ86556.1| predicted protein [Monosiga brevicollis MX1]
          Length = 592

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 117/330 (35%), Positives = 182/330 (55%), Gaps = 14/330 (4%)

Query: 32  IPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-----PRTLILEPTRELAA 86
           +P+ L   D+ GIA TG+GKT +F LP L +      ++       P  +I+ P+RELA 
Sbjct: 181 VPVALSGRDMIGIAFTGSGKTLAFSLPALMLALDQEIKMPFVGGEGPFAIIMAPSRELAR 240

Query: 87  QVADNFEKYG-----KNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           Q  D   ++      + Y  L + L IGG+  +   ++ + G  + +CTPGR++D   + 
Sbjct: 241 QTYDVLIEFTDALAKEGYPQLGIMLCIGGLSMQEVMERCQNGVHIAVCTPGRLIDVLGKK 300

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200
           ++ ++      +DEADRM+DMGF   I+ I S     RQTLLFSATM  +++  + + L 
Sbjct: 301 RITLDVCRYFCLDEADRMVDMGFEDDIRTIFSYFKGQRQTLLFSATMPTKVKDFAASALV 360

Query: 201 NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVN 260
            P  + V   +  A +++      Y     +   L + LQ   T    +IF  +K++V +
Sbjct: 361 KPVTVNVGGRAGAA-SLDVIQEVEYVNPDSRVVYLLECLQK--TPPPVMIFSEKKQDVDD 417

Query: 261 LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNF 320
           +   L  +G    AIHG+ DQ  R   +  FKEG   ++VA+D+A++GLD PD+ HV NF
Sbjct: 418 IHEYLLLKGVHAAAIHGSKDQEERDMAVKGFKEGRKDVLVATDIASKGLDFPDIKHVINF 477

Query: 321 DVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           D+P   ENY+HRIGRTGR+G+ G A T V+
Sbjct: 478 DMPEELENYVHRIGRTGRSGKTGLATTFVS 507


>gi|80477520|gb|AAI08449.1| LOC398188 protein [Xenopus laevis]
          Length = 768

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 204/376 (54%), Gaps = 22/376 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+   +S   +  +   G     PIQ KT   V    DV   A+TGTGKT SF +P++ 
Sbjct: 190 DFSKFPISKDTIKNLQAKGVTYLFPIQSKTFHTVYSGKDVVVQARTGTGKTFSFGIPLVE 249

Query: 62  ILEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L + +   AR R PR +IL PTRELA Q+ +      K   L VA   GG P++ Q   
Sbjct: 250 RLSEDQQPLARGRAPRVIILTPTRELAIQITNELRSMTKK--LKVACFYGGTPYQQQVFA 307

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL----- 173
           ++ G D L+ TPGRI D     +L +  ++ +V+DE D M DMGF   ++ I S+     
Sbjct: 308 IKDGIDFLVGTPGRIRDLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYKPD 367

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSK 230
                QTLLFSAT  D +  V++ +++   +++++  +     A T+EH  +A     S+
Sbjct: 368 PEENPQTLLFSATCPDWMYNVAKKYMRKQYEKVDLVGHRSQKAAITVEH--LAIECNRSQ 425

Query: 231 KCALLQQLLQ-SQDTMKNGIIFCNQKKNVVNL---CHSLEKQGFSVCAIHGNIDQRSRMK 286
           K A+L  ++Q    +    IIFC+ K     L   C SL++   S   +HG++ Q+ R  
Sbjct: 426 KAAVLGDIVQVYSGSHGKTIIFCDSKLQAHELSTNCGSLKQ---SAKPLHGDLQQKEREV 482

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
           +L  F++GT ++++A+++AARGLDIP+V  V  +  P  A+ Y+HR GRTGRAGR G   
Sbjct: 483 VLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCI 542

Query: 347 TLVAKEDIKHIDAIEK 362
           +L    +  ++  +E+
Sbjct: 543 SLYEPWEKHYLRNVER 558


>gi|312977884|ref|ZP_07789630.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           crispatus CTV-05]
 gi|310895191|gb|EFQ44259.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           crispatus CTV-05]
          Length = 453

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 136/413 (32%), Positives = 216/413 (52%), Gaps = 14/413 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  + P +   +    + KPT +Q K IP +L    V   A TG+GKT ++++P+   
Sbjct: 5   FIDSRIKPAIQAGLKKIHFEKPTKVQEKVIPAMLSDLSVVVQAATGSGKTHAYLVPIFNE 64

Query: 63  LEKGRARVRMPRTLILEPTRELA---AQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +E+ +  V+   TL   P+RELA    QVA    +     + ++A L G    E Q +K 
Sbjct: 65  IEEDKRYVQAIVTL---PSRELADQLYQVARQL-RDAAGMHFSIAHLAGRTDRERQLEKY 120

Query: 120 ERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +     ++I TPGR+LD   +    ++ ++  VIDEAD  LDMGF+  I  + + +P   
Sbjct: 121 QNNTPQLVIATPGRLLDFVQKKVFAVDQVKTFVIDEADMTLDMGFLNDIDQVAAKLPKDV 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q   FSAT+  +L      ++ +P  I ++ PS  A TI++  +   ++  +K  L + L
Sbjct: 181 QIAAFSATIPVKLSNFLRKYMAHPDDIVIDNPSVIAPTIKNDLLDIGSK-DRKNVLYKLL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q  +   ++F N K+ V  L + L+ QG  V  IHG + +R R + L   ++G  Q 
Sbjct: 240 TMGQPYL--ALVFANTKQKVDELTNYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQYQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARGLDI  V  V N+++P   E  IHRIGRTGR G  G A TL+ +E++  I+
Sbjct: 298 VVASDLAARGLDIDGVSLVVNYEIPRDIEFVIHRIGRTGRNGLSGHAITLIREEEMNRIE 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            +EK+     D++      L P   K   ++ N   KN  +  K  G+ +++K
Sbjct: 358 DLEKM-GVHFDFVEIKNGELVP--RKHYRSRENRQSKNRKLDTKLVGYVKKEK 407


>gi|169608057|ref|XP_001797448.1| hypothetical protein SNOG_07095 [Phaeosphaeria nodorum SN15]
 gi|118575178|sp|Q0UMB9|DBP4_PHANO RecName: Full=ATP-dependent RNA helicase DBP4
 gi|111064626|gb|EAT85746.1| hypothetical protein SNOG_07095 [Phaeosphaeria nodorum SN15]
          Length = 803

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 135/397 (34%), Positives = 217/397 (54%), Gaps = 28/397 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+DL LS      +    +   T IQ K +PL L+ HD+ G A+TG+GKT SF++P+L 
Sbjct: 50  DFSDLPLSDPTKQGLKACHFAVMTDIQRKAVPLALKGHDILGAAKTGSGKTLSFIIPVLE 109

Query: 62  ILEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNK 117
            L + +   A   +   LIL PTRELA Q+ D   K GK+ ++  A LLIGG   E++ +
Sbjct: 110 NLYRLQHVGADAGLG-ALILSPTRELAIQIFDVLCKIGKHGHMFAAGLLIGGKSLESERQ 168

Query: 118 KLERGADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            L R  ++L+ TPGR+L H ++    L++++++LV+DEADR+LDMGF   +  I   +P 
Sbjct: 169 ALPR-MNILVATPGRMLQHLSQTAAFLVDDLKMLVLDEADRILDMGFQRDVDAIIDYLPK 227

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP--SSTAETIEHCFVATYAQYSKKCAL 234
            RQTLLFSAT + ++  ++   LQ+P+ + V+    S+T ++++  ++       +K   
Sbjct: 228 ERQTLLFSATQSKKVSDLARLSLQDPEYVSVHAEDKSATPKSLQQNYI--ICPLEEKLDT 285

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFK 292
           L   +Q+    K  ++F +  K V  +  S    + G  +  IHG   Q +R+   + F 
Sbjct: 286 LWSFIQASKKSKI-LVFFSSAKAVRFVYESFRHMQPGIPLLHIHGRQKQGARLDTTAKFS 344

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                 + A+D+AARGLD P V  V   D P+  + YIHR+GRT R  R G+    +A  
Sbjct: 345 SAKNSCLFATDVAARGLDFPAVDFVIQVDCPDDVDTYIHRVGRTARYNREGRGVLFLAPS 404

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
           + + +  +++L  KKV            P+E I++ Q
Sbjct: 405 EEEGM--LKRLEAKKV------------PVEAINVRQ 427


>gi|311997|emb|CAA48790.1| eukaryotic translation initiation factor 4A (eIF-4A) [Drosophila
           melanogaster]
          Length = 402

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 130/377 (34%), Positives = 207/377 (54%), Gaps = 6/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F    + 
Sbjct: 31  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATF---SIA 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    +R  + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 88  ILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR KL    I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 148 GCHVVVGTPGRVYDMINR-KLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F+++P  I V     T E I+  F     Q + K   L  L  +
Sbjct: 207 LLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQ-FYVNVKQENWKLGTLCDLYDT 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 266 L-SITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  +D + +  IE
Sbjct: 325 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIE 384

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 385 QFYHTTIEEMPANIADL 401


>gi|84516304|ref|ZP_01003664.1| DEAD-box protein, ATP-independent RNA helicase [Loktanella
           vestfoldensis SKA53]
 gi|84510000|gb|EAQ06457.1| DEAD-box protein, ATP-independent RNA helicase [Loktanella
           vestfoldensis SKA53]
          Length = 762

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 191/343 (55%), Gaps = 6/343 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-LTIL-EKGR 67
           P +  A+   GY   TP+Q+      +   D+   AQTG+GKT  F L +  TIL E G 
Sbjct: 6   PTLAAALSAQGYTDLTPVQVAVTDAAVADQDLLVSAQTGSGKTVGFGLAIGPTILPEDGL 65

Query: 68  -ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
                 P  L++ PTRELA QV    +         +A  +GG+ F  + + LERGA ++
Sbjct: 66  FGPAGRPLALVIAPTRELALQVKRELQWLYAGTGAVLASCVGGMDFRDEKRSLERGAQIV 125

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+ DH  R  + +++I+ +++DEAD MLD+GF   ++ I    P +R+TL+FSAT
Sbjct: 126 VATPGRLRDHIMRNTIDLSDIKAVILDEADEMLDLGFREDLEFILDQAPPSRRTLMFSAT 185

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
           +   + K+++++ +N  R+   +  S    IE+  + T A +    A++  +L+  D   
Sbjct: 186 VPAAIAKLAQSYQKNAVRVASTSKESQHSDIEYRAL-TVANHDIDAAII-NVLRFYDA-P 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           N I+F N +  V  L   L  +GF+  A+ G + Q  R   L   ++G  ++ VA+D+AA
Sbjct: 243 NAIVFANTRAMVTRLTTRLANRGFATVALSGELSQTERTHALQAMRDGRARVCVATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           RG+D+P++  V + ++P  AE  +HR GRTGRAGR G +  +V
Sbjct: 303 RGIDLPNLELVIHAELPTNAEILLHRSGRTGRAGRKGISAMIV 345


>gi|332686449|ref|YP_004456223.1| ATP-dependent RNA helicase YqfR [Melissococcus plutonius ATCC
           35311]
 gi|332370458|dbj|BAK21414.1| ATP-dependent RNA helicase YqfR [Melissococcus plutonius ATCC
           35311]
          Length = 449

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 203/367 (55%), Gaps = 15/367 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ A+ + G+ +PT +Q K I ++ +  +V G +QTG+GKT +F+LP+L  
Sbjct: 4   FKQFQFKPFLMEALKEKGFQQPTQVQEKLIQMIQKGKNVIGQSQTGSGKTHTFLLPLLNK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
           ++     V++   +I  P+RELA Q+     +  K  +  + ++  IGG   + Q  KL+
Sbjct: 64  IDPTIDEVQV---IITTPSRELANQIYQAAIQAAKFSSPEIHISNFIGGTDKQRQLIKLK 120

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   +++ TPGRILD  N   L ++     VIDEAD  LDMGF+  +  I S +P   Q
Sbjct: 121 NQQPQLVVGTPGRILDMINEQALKVHTAFAFVIDEADMTLDMGFLEDVDQIASRLPKNLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+ ++L+   + +L+NP   E+ + +  A TI++        +S K   + QL+
Sbjct: 181 MLVFSATIPEKLRPFLKKYLENPVIEEIKSETVIASTIDNWL------FSTKGKDVNQLV 234

Query: 240 QSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               T+ +    IIF N K+ V  +   L++ G  V  IHG+I  R R +++   +    
Sbjct: 235 YQLLTIGHPYLAIIFANTKQRVDEITTYLKEHGLRVAKIHGDISPRERKRVMRQVQNLEY 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VA+DLAARG+DI  V  V N ++P   + +IHR+GRTGR G  G A TL +  D + 
Sbjct: 295 QYVVATDLAARGIDIEGVSEVINTEIPKDLDFFIHRVGRTGRNGLKGTAITLYSPADEQQ 354

Query: 357 IDAIEKL 363
           I  IEKL
Sbjct: 355 ITEIEKL 361


>gi|302803420|ref|XP_002983463.1| hypothetical protein SELMODRAFT_730 [Selaginella moellendorffii]
 gi|300148706|gb|EFJ15364.1| hypothetical protein SELMODRAFT_730 [Selaginella moellendorffii]
          Length = 457

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 126/364 (34%), Positives = 189/364 (51%), Gaps = 5/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS   +  + DA YV  T IQ   +P  L   D+ G A+TG+GKT +F++P++  
Sbjct: 3   FQQLPLSRLTLDGLKDAKYVTMTDIQRAALPHALCGRDILGAAKTGSGKTLAFLIPVIEK 62

Query: 63  LEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + R   +     LI+ PTRELA Q+ D   K GK ++L+  LLIGG    +  K+   
Sbjct: 63  LYRLRWTSMDGVGALIISPTRELAMQIFDELRKVGKFHDLSGGLLIGGRKDVSIEKQSVN 122

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           G ++L+CTPGR+L H +       + +++LV+DEADR+LDMGF   +  I + +P  RQT
Sbjct: 123 GLNILVCTPGRLLQHMHETVNFDCSPLKLLVLDEADRILDMGFAGTLNQIIAQIPKERQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT T  +Q ++   LQ+P+ + V+  S+ A               +K   L   ++
Sbjct: 183 FLFSATQTRSVQDLARLSLQSPEYLAVHAESAVATPARLQQTVMVVPLDQKIDTLWSFIK 242

Query: 241 SQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           S    K  +    C Q K V      L + G  +  +HG + Q  R+     F E    +
Sbjct: 243 SHLRAKVLVFLSSCKQVKFVYEAFKHL-RPGVPLTCLHGRLKQGGRLDAFYKFVEAEYAV 301

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M A+D+AARGLD P V  V   D P     YIHR+GRT R    G++  L++  + K + 
Sbjct: 302 MFATDIAARGLDFPTVDWVVQADCPEDVATYIHRVGRTARYKASGRSLLLLSPSETKMVA 361

Query: 359 AIEK 362
            +E+
Sbjct: 362 LLEE 365


>gi|146197867|dbj|BAF57644.1| eIF4A isoform 1A protein [Dugesia japonica]
          Length = 389

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 126/376 (33%), Positives = 206/376 (54%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   G+ KP+ IQ + +   ++ HDV   AQ+GTGKTA+F + +L  
Sbjct: 18  FDDMNLKEDLLRGIYAYGFEKPSAIQQRAVLPAIEGHDVIAQAQSGTGKTATFSVAILQR 77

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    L+L PTRELA Q+       G          IGG   +     LE G
Sbjct: 78  IDVTKNEVQ---ALVLAPTRELAKQIHKVIIALGDYMGAKSYACIGGTRVQEDVGNLENG 134

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   RG L  N+I++ V+DEAD ML  GF   I ++   +    Q +L
Sbjct: 135 VHVIVGTPGRVNDMIERGNLKTNSIKMFVLDEADEMLSRGFKEQIHSVIQFIEHDTQIVL 194

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P +I V     T E I   +V   ++   K   L  L ++ 
Sbjct: 195 LSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYV-NVSEEDYKFETLTDLYETL 253

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L  SL+ + F V ++HG++ Q  R +I+  F+ G+ ++++ +
Sbjct: 254 -TITQAVIFCNTRRKVDYLTESLKAKPFIVSSMHGDMQQDMRDQIMKEFRSGSSRILITT 312

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V ++DI+ +  +E 
Sbjct: 313 DLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTQDDIRTLQDLES 372

Query: 363 LIEKKVDWLNGDLSSL 378
                ++ +  +++ L
Sbjct: 373 YYSTHIEEMPMNIADL 388


>gi|297196654|ref|ZP_06914052.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297153328|gb|EDY66637.2| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 419

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 115/333 (34%), Positives = 174/333 (52%), Gaps = 9/333 (2%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
           +G  +P PIQ  T+P  L   DV G A+TG+GKT +F L +LT     RA  + P  L+L
Sbjct: 8   SGVTEPFPIQAATLPDALAGRDVLGRARTGSGKTLAFGLALLTRTAGRRAEPKQPLGLVL 67

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QV+D  + Y     L +A ++GG+    Q   L  GADV++ TPGR+ D   
Sbjct: 68  VPTRELAQQVSDVLDPYALALGLRLATVVGGLSIGRQATLLRAGADVVVATPGRLTDLVA 127

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           R    ++ + I V+DEAD+M DMGF+P +  +   V    Q +LFSAT+   +  +   +
Sbjct: 128 RRDCRLDQVRITVLDEADQMCDMGFLPQVSELLDQVRPGGQRMLFSATLDRNVDHLVGRY 187

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG--IIFCNQKK 256
           L +P    V+  +    T+EH  +  +       A       ++   ++G  ++F + K 
Sbjct: 188 LHDPVLATVDRAAGAVATMEHHVLNIHPADKYATA-------TEIAARDGRVLMFLDTKH 240

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
            V      L   G    A+H    Q  R   L+ FK G + ++VA+++AARG+ +  +  
Sbjct: 241 AVDQFTRHLRGSGIRAAALHSGKSQPQRTHTLAQFKSGEVTVLVATNVAARGIHVDALDL 300

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           V N D P   ++Y+HR GRT RAG  G+  TLV
Sbjct: 301 VVNVDPPADPKDYLHRGGRTARAGESGRVVTLV 333


>gi|149010613|ref|ZP_01831984.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|303255825|ref|ZP_07341866.1| putative helicase [Streptococcus pneumoniae BS455]
 gi|303266290|ref|ZP_07352181.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae BS457]
 gi|147765094|gb|EDK72023.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|301801607|emb|CBW34305.1| putative helicase [Streptococcus pneumoniae INV200]
 gi|302597209|gb|EFL64314.1| putative helicase [Streptococcus pneumoniae BS455]
 gi|302644220|gb|EFL74476.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae BS457]
          Length = 447

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 194/368 (52%), Gaps = 13/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   + ++ V ++  +GG     Q +K
Sbjct: 61  QQLDEASDSVQ---AVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           LE     ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ- 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T   + K   + Q 
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKG-HDKNAQIYQL 236

Query: 237 -QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            QL+Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  +   
Sbjct: 237 TQLMQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLD 292

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D  
Sbjct: 293 FEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDS 352

Query: 356 HIDAIEKL 363
            I  +EKL
Sbjct: 353 DIRELEKL 360


>gi|28207202|gb|AAK72102.1| DEAD-box protein CAGE [Homo sapiens]
          Length = 630

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 121/362 (33%), Positives = 203/362 (56%), Gaps = 10/362 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK---G 66
           P ++ +++  G VKPTPIQ +  P++LQ  D+  +AQTGTGKT S+++P    L+     
Sbjct: 231 PDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS 290

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTRELA  V     KY     L    + GG     Q + + +G D++
Sbjct: 291 REQRNGPGMLVLTPTRELALHVEAECSKYSYK-GLKSICIYGGRNRNGQIEDISKGVDII 349

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + +I  LVIDEAD+MLDM F P I+ I   V   RQT++ SAT
Sbjct: 350 IATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSAT 409

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
             D +++++ ++L++P  + V   +  A  T++   + T  +  +K AL Q+ +++    
Sbjct: 410 WPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEK--EKRALTQEFVENMSPN 467

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F +QK    +L      QG S  ++HGN +Q  + + + +FK G I++++ +D+ 
Sbjct: 468 DKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIV 527

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGR-TGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           +RGLD+ DV HV+N+D P   + Y+HR+G   G+   H    +L+ + D K    + K++
Sbjct: 528 SRGLDLNDVTHVYNYDFPRNIDVYVHRVGSLDGQERLH--ISSLITQRDSKMAGELIKIL 585

Query: 365 EK 366
           ++
Sbjct: 586 DR 587


>gi|167755660|ref|ZP_02427787.1| hypothetical protein CLORAM_01175 [Clostridium ramosum DSM 1402]
 gi|167704599|gb|EDS19178.1| hypothetical protein CLORAM_01175 [Clostridium ramosum DSM 1402]
          Length = 456

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 121/388 (31%), Positives = 208/388 (53%), Gaps = 14/388 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    +    +  + + G+ KPT IQ + IPLV +  D+ GI+QTGTGKT +F+LP++  
Sbjct: 4   FTKFKMQEFCLQTIEELGFQKPTSIQEQVIPLVYKNSDIIGISQTGTGKTHAFLLPVMDR 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADN---FEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           ++     V+    +I  PTRELA Q+ +N   F KY  N  + V+L++GG   +    KL
Sbjct: 64  IDPKNNSVQ---AVITAPTRELATQIYNNAKLFTKY--NSEIKVSLIVGGNDRQKTVNKL 118

Query: 120 ERGADVLICTPGRILD-HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                V+I TPGRI D   +   L +      ++DEAD  L+ G++  I  +   +    
Sbjct: 119 AVQPHVVIGTPGRIKDLSLDEQALKITTASTFIVDEADMTLEFGYLEDIDAVAGKMRDDL 178

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           + ++FSAT+   L+   + ++++P  +E++    T E +EH  +AT  ++  +  +L+++
Sbjct: 179 RMMVFSATIPQMLRPFLKKYMKSPVLVEIDDDKVTTENVEHILIAT--KHKNRYEVLKKI 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++S D     IIF N + +V +    L + GF V  IHG+++ R R +++   +    Q 
Sbjct: 237 IESIDPYV-CIIFANTRSDVASTTKKLREDGFKVGEIHGDLEPRERKQMMRRIQNNEYQF 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  V HV N + P   + YIHR GR GR    G  +++    D  ++ 
Sbjct: 296 IVATDIAARGIDIDGVSHVINMEFPKEPDFYIHRSGRCGRGNYTGICYSMYDTTDEANLK 355

Query: 359 AIEK--LIEKKVDWLNGDLSSLNPPLEK 384
            +E+  ++ K +   NG    L   L++
Sbjct: 356 VLERKGILFKNMTIKNGQFVDLGDRLKR 383


>gi|115532546|ref|NP_001040788.1| hypothetical protein H20J04.4 [Caenorhabditis elegans]
 gi|24418257|gb|AAF39890.2| Hypothetical protein H20J04.4a [Caenorhabditis elegans]
          Length = 488

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 201/378 (53%), Gaps = 14/378 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LG+   +   +        TP+Q   IP +L+  D+ G A+TGTGKT +F +P   I
Sbjct: 91  FSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIP---I 147

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K          LIL PTRELA Q+A+ F   GK   L  ++++GG     Q ++L   
Sbjct: 148 LQKLSVDPYGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQARELSER 207

Query: 123 ADVLICTPGRILDHFNRG----KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             V++ TPGR+ D           +   I+  V+DEADRML+  +   ++ I   +   R
Sbjct: 208 PHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESISEKR 267

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIE--VNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           QTLL SAT+T+ +  +     + P   E       ST + +E  +V      + K A L 
Sbjct: 268 QTLLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDRLEQKYVV--CPVAVKDAYLV 325

Query: 237 QLLQ--SQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            +++  S+   K+ + IF    +    L +  E  GF V ++H  I Q+ R+  LS F+ 
Sbjct: 326 YVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRS 385

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            T+Q+++ +D+A+RGLDIP V  V N +VP   + YIHR+GR+ RAGR G A + V + D
Sbjct: 386 KTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYD 445

Query: 354 IKHIDAIEKLIEKKVDWL 371
           ++ + A+E++I KK+D L
Sbjct: 446 VELLQAVEQVIGKKLDEL 463


>gi|238878859|gb|EEQ42497.1| hypothetical protein CAWG_00709 [Candida albicans WO-1]
          Length = 550

 Score =  202 bits (515), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 185/360 (51%), Gaps = 7/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTASF++P L +
Sbjct: 32  FEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQL 91

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    +V+    LIL PTRELA Q +      GK+      +  GG        +L   
Sbjct: 92  VKPKLNKVQ---ALILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIVRLHDP 148

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +L+ TPGR+LD   R  + +    + V+DEAD+ML   F   I+ I    P  RQ LL
Sbjct: 149 VHILVGTPGRVLDLAARKVVDLLECPLFVMDEADKMLSREFKGIIEQILEFFPPNRQALL 208

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    ++   +  L  P  I +     T + I   +   + +  +K   L  L  S+
Sbjct: 209 FSATFPLAVKSFMDKHLTKPYEINL-MDELTLKGISQFYA--FVEEKQKLHCLNTLF-SK 264

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   IIFCN    V  L   + + G+S    H  + Q++R K+   F++G ++ +V S
Sbjct: 265 LQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCS 324

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L++  D   +  IE+
Sbjct: 325 DLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYSLYKIEQ 384


>gi|310796577|gb|EFQ32038.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 808

 Score =  202 bits (515), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 118/350 (33%), Positives = 197/350 (56%), Gaps = 13/350 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+DL L       +  + +   T IQ + +PL L+  D+ G A+TG+GKT +FV+P+L 
Sbjct: 54  NFSDLPLCEATRTGLDKSHFETLTDIQSRALPLALKGSDILGAAKTGSGKTLAFVIPVLE 113

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L + R         LI+ PTRELAAQ+ +   K G+N++ +  L+IGG   + + ++L 
Sbjct: 114 KLYRARWTEYDGLGALIISPTRELAAQIFEVLRKVGRNHSFSAGLVIGGKSLKEEAERLS 173

Query: 121 RGADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  ++L+CTPGR+L H ++     ++N++ILV+DEADR++DMGF   +  +   +P TRQ
Sbjct: 174 K-MNILVCTPGRMLQHLDQTAGFDVDNLQILVLDEADRIMDMGFQSAVDALVEHLPATRQ 232

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT--YAQYSKKCALLQQ 237
           TLLFSAT + ++  ++   L++P+ + V+   ST + ++  ++ T  + +       ++ 
Sbjct: 233 TLLFSATQSKKISDLARLSLRDPEYVSVHE-ESTPKNLQQHYILTPLHEKLDTLYGFIKA 291

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L+S+      I+F +  K V     S+   + G  +  + G   Q  RM+I   F +  
Sbjct: 292 NLRSK-----IIVFFSSGKQVRFAYESMRHLQPGIPLLHLLGKQKQLQRMEITKRFADAN 346

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
              + A+D+ ARG+D P V  V   D P  A+ YIHR+GRT R  R GKA
Sbjct: 347 YSCLFATDVVARGVDFPAVDWVVQVDCPEDADTYIHRVGRTARYERDGKA 396


>gi|156844185|ref|XP_001645156.1| hypothetical protein Kpol_1062p5 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380632|sp|A7TK63|DBP8_VANPO RecName: Full=ATP-dependent RNA helicase DBP8
 gi|156115814|gb|EDO17298.1| hypothetical protein Kpol_1062p5 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 431

 Score =  202 bits (515), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 133/385 (34%), Positives = 206/385 (53%), Gaps = 26/385 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGLS  +V ++       PT IQ   IP +L+  D  G A+TG+GKT +F  PML+
Sbjct: 3   DFKSLGLSRWLVESLNAMRITHPTAIQKHCIPEILKGRDCIGGAKTGSGKTIAFAGPMLS 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                 + +     ++L PTRELA Q+A+ F   G + N+ V L++GG     Q  +L++
Sbjct: 63  QWSDDPSGMF---GVVLTPTRELAIQIAEQFTALGSSMNIRVCLVVGGESIVKQALELQK 119

Query: 122 GADVLICTPGRILDH-FNRGKLL---MNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
               +I TPGR+  H  + G+ +   ++ ++ LV+DEAD +L   F   +    + +P  
Sbjct: 120 KPHFIIATPGRLAHHILSSGEEVVGGLSRVKYLVLDEADLILTQTFAADLSTCIAKLPPK 179

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPK------RIE----VNTPSSTAETIEHCFVATY 225
             RQTLLF+AT+TD+++ +     Q+ K       +E    V  PS+    +E+  V  +
Sbjct: 180 QKRQTLLFTATITDQVRALQNAPAQDSKPPLFAYEVENVDNVAVPSTL--KLEYLLVPEH 237

Query: 226 AQYSKKCALLQQLLQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                K A L QLL  +D   + +I F N+      L  +L      V ++H  + Q  R
Sbjct: 238 V----KEAYLYQLLTCEDYKDSSVIVFVNRTTAAEVLRRTLRSLEVRVASLHSQMPQSER 293

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
           +  L  F+    ++++A+D+AARGLDIP V  V N+D+P   + +IHR GRT RAGR G 
Sbjct: 294 INSLQRFRANAARVLIATDVAARGLDIPTVELVINYDIPQDPDTFIHRSGRTARAGRSGD 353

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVD 369
           A + V   D+  I+AIE+ I KK+D
Sbjct: 354 AISFVTPRDVSRIEAIEERINKKMD 378


>gi|254577701|ref|XP_002494837.1| ZYRO0A10802p [Zygosaccharomyces rouxii]
 gi|238937726|emb|CAR25904.1| ZYRO0A10802p [Zygosaccharomyces rouxii]
          Length = 771

 Score =  202 bits (515), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 129/364 (35%), Positives = 202/364 (55%), Gaps = 21/364 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL LS  V+  + DA YVK T IQ  +IP+ L+ +DV G A+TG+GKT +F++P+L  
Sbjct: 41  FQDLPLSNAVLRGLKDASYVKLTDIQRDSIPVSLKGNDVLGAAKTGSGKTLAFLIPVLEK 100

Query: 63  LEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG--IPFEAQNKKL 119
           L + R         LI+ PTRELA Q+ +   K G + + +  L+IGG  + FEA+    
Sbjct: 101 LYRERWTEYDGVGALIISPTRELAMQIYEVLIKIGTHCSFSAGLVIGGKDVKFEAERIS- 159

Query: 120 ERGADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
               ++LI TPGR+L H ++   L ++N+++LV+DEADR LDMGF   +  I S +P  R
Sbjct: 160 --KINILIGTPGRLLQHLDQSVGLNIDNLQMLVLDEADRCLDMGFKKTLDAIVSNLPPIR 217

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS-------TAETIEHCFVATYAQYSKK 231
           QTLLFSAT +  L  ++   L + K   V TP++       T ET++  ++    + + K
Sbjct: 218 QTLLFSATQSQSLNDLARLSLTDYKT--VGTPANVSGSQPETPETLQQHYIVV--ELADK 273

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK--QGFSVCAIHGNIDQRSRMKILS 289
              L   +++    K  I+F +  K V  +  +  K   G S+  +HG   QR+R + L 
Sbjct: 274 LDTLFSFIKTHLKCKM-IVFFSSSKQVHFVYETFRKLQPGISLMHLHGRQKQRARTETLD 332

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F       ++A+D+ +RG+D P V  V   D P   + YIHR+GR+ R G+ GK+  ++
Sbjct: 333 KFSRAQQVCLIATDVVSRGIDFPAVDWVVQVDCPENVDTYIHRVGRSARYGKQGKSLIML 392

Query: 350 AKED 353
             ++
Sbjct: 393 TPQE 396


>gi|319644991|ref|ZP_07999224.1| YqfR protein [Bacillus sp. BT1B_CT2]
 gi|317392800|gb|EFV73594.1| YqfR protein [Bacillus sp. BT1B_CT2]
          Length = 439

 Score =  202 bits (515), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 131/400 (32%), Positives = 205/400 (51%), Gaps = 15/400 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L P ++ AV   G+ +PT IQ + IP  L+     G +QTGTGKT +++LP+L+ 
Sbjct: 6   FEMYDLKPFIIEAVHHLGFYEPTDIQKRLIPAALKGESAIGQSQTGTGKTHAYLLPLLSR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEK----YGKNYNLTVALLIGGIPFEAQNKK 118
           ++  +  V++   +I  PTRELA Q+     K     G +  +     IGG   +    K
Sbjct: 66  IDPEKEFVQV---VITAPTRELANQIHQEVLKITKFLGPDEAIRSKCFIGGTDKQKSIDK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+    +++ TPGRI D      L ++     VIDEAD MLDMGF+  +  I S +P   
Sbjct: 123 LKTQPHLVVGTPGRIADLIREQALDVHKAGSFVIDEADLMLDMGFLEDVDFIGSHMPEGL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+   + ++ NP+   V     TAE IEH  + +  ++  K  LL ++
Sbjct: 183 QMLVFSATIPEKLKPFLKKYMANPRYAHVEPKHITAEKIEHVLIPS--RHRDKNELLLEV 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   +     I+F N K     +   L  +G  V  +HG +  R R K++    +     
Sbjct: 241 MTHLNPY-LAIVFANTKTTADEIAAYLTDKGMKVGLLHGGLTPRERKKVMKQIGDLEFTY 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+DLAARG+DI  V HV N+++P+  + Y+HR+GRT RAG  G A T     D    D
Sbjct: 300 IIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGTSGTAMTFY---DTSDED 356

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           A+ KL +  + + N  +       +KID  +    RK  P
Sbjct: 357 ALVKLEQMGIVFENMRIEKGE--WKKIDDRKRRQNRKRTP 394


>gi|145349596|ref|XP_001419215.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579446|gb|ABO97508.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 340

 Score =  202 bits (515), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 176/329 (53%), Gaps = 35/329 (10%)

Query: 40  DVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY 99
           DV  +A+TG+GKT +F+LPM      G  R      L++ PTRELA Q+    EK+G  +
Sbjct: 2   DVVAVAKTGSGKTLAFLLPMF----HGMKRHGGVEGLVVAPTRELAIQIQAEAEKFGAAH 57

Query: 100 NLTVALLIGGI-PFEAQNKKLERGADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADR 157
                ++ GG   +E +N    +   ++I TPGR+ D  ++ G L +  + ++V+DEADR
Sbjct: 58  GFQSVVVYGGASAYEQKNALRTKKPCLVIGTPGRLTDLMSQEGVLSLAELSVIVLDEADR 117

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGF P I+ I    P  RQTLLFSAT    ++K++  +L   K             +
Sbjct: 118 MLDMGFEPQIKQIFGATPTKRQTLLFSATWPKSVRKLAAGYLNQDK-----------SCV 166

Query: 218 EHCFV---ATYAQYSKKCALLQQLLQSQDTMKNG---------------IIFCNQKKNVV 259
           E  F+   A+  + +   A+ Q+ ++++D  K+                ++F N K+ V 
Sbjct: 167 EEIFIGEGASDGELAANKAITQRFIEARDHEKDEHLYNLICEFPDESRVVVFANTKRRVE 226

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
           NL  +   +GF   ++HG+  Q  R   L  F E    LM+A+D+AARGLDI  V HV N
Sbjct: 227 NLAKTFAAEGFGTVSVHGDKSQADREASLRKFVENKAPLMMATDVAARGLDIKGVTHVIN 286

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           +D+    E+Y+HRIGRTGRAG  G A T 
Sbjct: 287 YDMARDVESYVHRIGRTGRAGELGAAVTF 315


>gi|332670894|ref|YP_004453902.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi
           ATCC 484]
 gi|332339932|gb|AEE46515.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484]
          Length = 529

 Score =  202 bits (514), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 122/377 (32%), Positives = 189/377 (50%), Gaps = 9/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+   +V A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F +P++  
Sbjct: 4   FADLGVPAVLVRALAADGITAPFPIQTATLPDALAGTDVLGRGRTGSGKTLAFAIPLVAR 63

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               RA      PR L+L PTRELA+Q+            L    + GG+    Q   L 
Sbjct: 64  TAAARASTAPARPRALVLAPTRELASQIDATIAPLAAAVGLRSTTVFGGVAQSRQVTALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+++  PGR+ D   +  + ++++ I V+DEAD M D+GF+P ++ +    P   Q 
Sbjct: 124 AGADIVVACPGRLEDLLQQRLVSLDDVAITVLDEADHMADLGFLPVVRRLLDRTPRDGQR 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ + +  + + +L  P    V++ +S    + H  +       KK  +  + L 
Sbjct: 184 LLFSATLDNGVDVLVKRYLTTPVEHSVDSAASPVTAMTHHLLEVSDVEVKKAVV--RALA 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S    +  ++F   K     L   L   G     +HGN+ Q +R + L  F  G ++++V
Sbjct: 242 SGTGRR--VLFTRTKHQAKKLAKQLTADGIPSVDLHGNLGQGARERNLEAFSSGAVRVLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE---DIKHI 357
           A+D+AARG+ + DVG V + D P   + Y+HR GRT RAG  G   TLV  E   D++ +
Sbjct: 300 ATDIAARGIHVDDVGLVVHVDPPAEHKAYLHRSGRTARAGAGGDVVTLVLPEQRGDVRAL 359

Query: 358 DAIEKLIEKKVDWLNGD 374
               K+  +      GD
Sbjct: 360 TRAAKITAQPRPVTPGD 376


>gi|26344027|dbj|BAC35670.1| unnamed protein product [Mus musculus]
          Length = 483

 Score =  202 bits (514), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 117/362 (32%), Positives = 194/362 (53%), Gaps = 8/362 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 97  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L+  +  ++    +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 157 RLDLKKDNIQ---AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   ++++ ++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 214 DTVHVVIATPGRILDLIKKGVAKVDHVRMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK   + LQ P  I +    +     E+     Y    +K   L  L  
Sbjct: 274 LLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTEY---YAYVTERQKVHCLNTLF- 329

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 330 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 389

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 390 CTDLFTRGIDIQAVNVVMNFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449

Query: 361 EK 362
           E+
Sbjct: 450 EE 451


>gi|289616811|emb|CBI56474.1| unnamed protein product [Sordaria macrospora]
          Length = 586

 Score =  202 bits (514), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 128/356 (35%), Positives = 198/356 (55%), Gaps = 15/356 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF++L LS K + A+ + G+ K T IQ + IP +L   DV G A+TG+GKT +F++P + 
Sbjct: 115 DFSELNLSEKTMKAIAEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 174

Query: 62  ILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + R     +++ PTRELA Q+     +  KN++ T  ++IGG    A+ +KL 
Sbjct: 175 MLSSLRFKPRNGTGAIVVTPTRELALQIFGVARELMKNHSQTYGVVIGGANRRAEAEKLG 234

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQ 179
           +G ++LI TPGR+LDH      +  N+  L+IDEADR+L++GF   ++ I  ++P   RQ
Sbjct: 235 KGVNLLIATPGRLLDHLQNTPFVFKNMRSLIIDEADRILEIGFEDEMRQIIKILPKEDRQ 294

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPS----STAETIEHCFVATYAQYSKKCALL 235
           T+LFSAT T +++ ++   L+ P  + VN       ST E ++  +V   A   K+  LL
Sbjct: 295 TMLFSATQTTKVEDLARISLR-PGPLYVNVDEEKQFSTVEGLDQGYVVVDA--DKRFLLL 351

Query: 236 QQLLQSQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
              L+     K  + F  CN  K    L   ++ Q   V  +HG   Q+ R      F  
Sbjct: 352 FSFLKKMQKKKVIVFFSSCNSVKYYSELLQYIDLQ---VLDLHGKQKQQKRTNTFFEFCN 408

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            T   ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R G + K  +L+
Sbjct: 409 ATQGTLICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTAR-GNNTKGRSLL 463


>gi|209882552|ref|XP_002142712.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209558318|gb|EEA08363.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 555

 Score =  202 bits (514), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 143/404 (35%), Positives = 212/404 (52%), Gaps = 43/404 (10%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M ++ L LS  ++ A+ D  +V PTPIQ + IPL L   D+   A+TG+GKTA+F+LP +
Sbjct: 1   MMWSSLELSRPILKALNDLNFVNPTPIQKEVIPLALAGRDILAEAETGSGKTAAFLLPTI 60

Query: 61  TILEKG---RARVRMP----------RTLILEPTRELAAQVADNFEKYGKNYNLTVA--L 105
             L K    RAR   P          + LIL P+RELA Q  D  E   K Y L +   +
Sbjct: 61  ERLLKFPGIRARKMSPLGPTGGLNATKVLILLPSRELAMQCFDVLESLIK-YCLIITRCI 119

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFI 164
           + GG+        L    D++I TPGRILD   N   + +  +EI+++DEADR+LDMGF 
Sbjct: 120 VTGGMSQSQHEVTLRSQPDIVIATPGRILDMLINTMGVHLELLEIVILDEADRLLDMGFR 179

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV----------NTPSSTA 214
                I   V   RQT+LFSAT++  +  ++   L+NP RI            NT   T+
Sbjct: 180 RECLEILRYVSQCRQTMLFSATLSRGVTDLALLTLRNPCRISTIGLGRNAILSNTEGITS 239

Query: 215 E--------TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN---VVNLCH 263
           +        T+   FV    +  ++ AL   L  S+   +  I+F   KK    +  LC+
Sbjct: 240 DVSTIGLSTTLNQEFVELNEEKDREGALFHIL--SKIYTERVIVFFQTKKEARRISILCN 297

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
            L   GFS   +HG + Q  R + L+ F +G  ++++AS+LAARGLDI  +  V NF +P
Sbjct: 298 IL---GFSAVELHGYLTQEKRNENLARFTKGESKILLASELAARGLDIKGITAVINFTLP 354

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
             A  YIHR+GRT R G +G + TL ++ +   + ++ K + +K
Sbjct: 355 LEASRYIHRVGRTARIGENGNSITLYSQSERSRLKSLMKQVLRK 398


>gi|126728360|ref|ZP_01744176.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Sagittula
           stellata E-37]
 gi|126711325|gb|EBA10375.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Sagittula
           stellata E-37]
          Length = 736

 Score =  202 bits (514), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 120/365 (32%), Positives = 196/365 (53%), Gaps = 8/365 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQ-IKTIPLVLQRHDVCGIAQTGTGKTASFVL---PMLTILEK 65
           P +  A+ + GY   TP+Q   T P    R D+   AQTG+GKT  F L   P L   E+
Sbjct: 3   PALTDALTERGYATLTPVQEAVTAPEAFGR-DLLVSAQTGSGKTVGFGLAIAPTLLGEEQ 61

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
                  P  L++ PTRELA QV        +     V   +GG+    + + LERG  +
Sbjct: 62  AFGPAGTPLALVVAPTRELAFQVMQELRWLYEKTGAMVNSCVGGMDVRQERRFLERGTHI 121

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           ++ TPGR+ DH  RG L ++++  +V+DEAD MLD+GF   ++ I    P  R+TLLFSA
Sbjct: 122 VVGTPGRLCDHIRRGALDLSDVRAVVLDEADEMLDLGFREDLEFILQTAPAERRTLLFSA 181

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           T++  + +++E F ++  RI  NT +   +  +  + A     +     +  LL+  D  
Sbjct: 182 TVSPVIGRIAEEFQKDAFRI--NTINKAQQHADIAYKALRVAQADSDHAIFNLLRFHDD- 238

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
           ++ I+F N +  V +L   L  +G SV ++ G + Q+ R   L   ++G  ++ VA+D+A
Sbjct: 239 ESAIVFANTRAQVNHLTARLHNRGLSVVSLSGELSQQERTHALQAMRDGRARVCVATDVA 298

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARG+D+P++  V + D+P   E+ +HR GRTGRAG+ G +  +V  + +K  + + K  +
Sbjct: 299 ARGIDLPNLSLVIHADLPTNTESLLHRSGRTGRAGKKGISALIVPPKSVKKAERLLKWAK 358

Query: 366 KKVDW 370
              +W
Sbjct: 359 ITAEW 363


>gi|332076039|gb|EGI86505.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
           GA41301]
          Length = 411

 Score =  202 bits (514), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 194/368 (52%), Gaps = 13/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   + ++ V ++  +GG     Q +K
Sbjct: 61  QQLDEASDSVQ---AVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           LE     ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ- 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T   + K   + Q 
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKG-HDKNAQIYQL 236

Query: 237 -QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            QL+Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  +   
Sbjct: 237 TQLMQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLD 292

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D  
Sbjct: 293 FEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDS 352

Query: 356 HIDAIEKL 363
            I  +EKL
Sbjct: 353 DIRELEKL 360


>gi|297736067|emb|CBI24105.3| unnamed protein product [Vitis vinifera]
          Length = 536

 Score =  202 bits (514), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 121/331 (36%), Positives = 189/331 (57%), Gaps = 17/331 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+  ++V A  + G+  P+ IQ + IP  L+  D+ G+AQTG+GKT +F LP+L  
Sbjct: 11  FKDLGICEQLVEACENLGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPIL-- 68

Query: 63  LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +A +  P+ L   +L PTRELA Q+A+ FE  G    L  A+L+GG+    Q   L
Sbjct: 69  ----QALLDTPQVLFACVLSPTRELAIQIAEQFEALGSGIGLKCAVLVGGVDHTQQAIAL 124

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +   +++ TPGR++DH +  K   +  ++ LV+DEADR+L+  F   I  I S++P  R
Sbjct: 125 AKRPHIVVGTPGRLMDHLSNTKGFSLRTMKYLVLDEADRLLNDDFEKAIDEILSVIPRER 184

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +T LFSATMT +++K+    L+NP +IEV +  ST +T++  +    A+Y K+C L+  L
Sbjct: 185 KTYLFSATMTKKVRKLQRACLRNPVKIEVASKYSTVDTLKQQYRFVPAKY-KECYLVYIL 243

Query: 239 --LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L    TM    +F         L   L   G     I G++ Q  R+  L+ FK G  
Sbjct: 244 TELSGSTTM----VFTRTCDATRLLALLLRNLGLRAIPISGHMSQAKRLGALNKFKAGEC 299

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            +++ +D+A+RGLDIP V  V N+D+P+ ++
Sbjct: 300 NILICTDVASRGLDIPSVDMVINYDIPSNSK 330



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 33/49 (67%)

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           F +P    +YIHR+GRT RAGR G A +LV + +++    IEKLI KK+
Sbjct: 423 FTLPRVFGDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKL 471


>gi|237734407|ref|ZP_04564888.1| helicase [Mollicutes bacterium D7]
 gi|229382637|gb|EEO32728.1| helicase [Coprobacillus sp. D7]
          Length = 448

 Score =  202 bits (514), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 120/376 (31%), Positives = 205/376 (54%), Gaps = 14/376 (3%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
            + + G+ KPT IQ + IPLV +  D+ GI+QTGTGKT +F+LP++  ++     V+   
Sbjct: 8   TIEELGFQKPTSIQEQVIPLVYKNSDIIGISQTGTGKTHAFLLPVMDRIDPKNNSVQ--- 64

Query: 75  TLILEPTRELAAQVADN---FEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
            +I  PTRELA Q+ +N   F KY  N  + V+L++GG   +    KL     V+I TPG
Sbjct: 65  AVITAPTRELATQIYNNAKLFTKY--NSEIKVSLIVGGNDRQKTVNKLAVQPHVVIGTPG 122

Query: 132 RILD-HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190
           RI D   +   L +      ++DEAD  L+ G++  I  +   +    + ++FSAT+   
Sbjct: 123 RIKDLSLDEQALKITTASTFIVDEADMTLEFGYLEDIDAVAGKMRDDLRMMVFSATIPQM 182

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGII 250
           L+   + ++++P  +E++    T E +EH  +AT  ++  +  +L+++++S D     II
Sbjct: 183 LRPFLKKYMKSPVLVEIDDDKVTTENVEHILIAT--KHKNRYEVLKKIIESIDPYV-CII 239

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F N + +V +    L + GF V  IHG+++ R R +++   +    Q +VA+D+AARG+D
Sbjct: 240 FANTRSDVASTTKKLREDGFKVGEIHGDLEPRERKQMMRRIQNNEYQFIVATDIAARGID 299

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK--LIEKKV 368
           I  V HV N + P   + YIHR GR GR    G  +++    D  ++  +E+  ++ K +
Sbjct: 300 IDGVSHVINMEFPKEPDFYIHRSGRCGRGNYTGICYSMYDTTDEANLKVLERKGILFKNM 359

Query: 369 DWLNGDLSSLNPPLEK 384
              NG    L   L++
Sbjct: 360 TIKNGQFVDLGDRLKR 375


>gi|302382668|ref|YP_003818491.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193296|gb|ADL00868.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 728

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 117/358 (32%), Positives = 192/358 (53%), Gaps = 25/358 (6%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQR---------HDVCGIAQTGTGKTASFVLPML 60
           P +  A+ + GY +PTP+Q   +   L            D+   AQTG+GKT +F L + 
Sbjct: 8   PALDRALSERGYAEPTPVQAAVLEAALSEDGSVDAESGRDLLVSAQTGSGKTVAFGLALA 67

Query: 61  TILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L     R      P  L++ PTRELA QVA             +   +GG+  + + +
Sbjct: 68  PTLLGEAERFTDFGAPLALVIAPTRELAQQVASELTWLYAQTGARIVSCVGGMDPKVERR 127

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LERGA +++ TPGR+ DH  RG L ++    +V+DEAD MLDMGF   +  I    P T
Sbjct: 128 ALERGAHIVVGTPGRLRDHLERGALDLSEARAVVLDEADEMLDMGFQEDLTFILDAAPPT 187

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R+TL+FSAT+  ++ ++++ + ++  RI+    + +   IE+  +        +CA  + 
Sbjct: 188 RRTLMFSATLARDIVQLAKTYQRDAIRIDTVAGNKSHADIEYKAI--------RCAPNEI 239

Query: 238 LLQSQDTMK-----NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L   + ++       ++F N ++ V +L  SL ++GFSV  + G + Q +R + L   +
Sbjct: 240 ELAVVNVLRYFEAPGALVFANTRERVKHLTASLRERGFSVVGLSGELTQSARSEALQALR 299

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           +G  ++ VA+D+AARGLD+PD+G V + ++P      +HR GRTGRAG+ G +  LV+
Sbjct: 300 DGHARVCVATDVAARGLDLPDLGLVIHAEIPVNKAGLLHRSGRTGRAGKKGVSVLLVS 357


>gi|302900149|ref|XP_003048204.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256729136|gb|EEU42491.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 487

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 119/362 (32%), Positives = 190/362 (52%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +  L   ++  + +AG+ KP+PIQ + IP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 49  LEFENFALKRDLLMGIFEAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPAL 108

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E+   +V   + LIL PTRELA Q +   +  GK+  + V +  GG        +L+
Sbjct: 109 ---ERINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGVNVMVTTGGTGLRDDIIRLQ 165

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +    ++   + ++DEAD++L + F P I+ +    P  RQ 
Sbjct: 166 DPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQV 225

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++  S+  + +P  I +     T   I   +   + +  +K   L  L  
Sbjct: 226 MLFSATFPLSVKDFSDKNMVSPYEINL-MDELTLRGITQYY--AFVEEKQKVHCLNTLF- 281

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 282 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMQQHARNRVFHDFRNGVCRNLV 341

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 342 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNI 401

Query: 361 EK 362
           E+
Sbjct: 402 ER 403


>gi|320585934|gb|EFW98613.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 572

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 128/388 (32%), Positives = 198/388 (51%), Gaps = 25/388 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+ P +V ++ +    +PT IQ   IP +L   D  G ++TG+GKT +F +P+L  
Sbjct: 140 FGSLGVRPWLVQSLANMAIHRPTSIQKGCIPAILSGDDCIGGSRTGSGKTVAFAVPVLQA 199

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                + +     L+L PTRELA Q+ + F        L   L+ GG    AQ   L R 
Sbjct: 200 WATDPSAIF---ALVLTPTRELALQIYEQFLAISAPQPLKAVLVTGGADMRAQATALARR 256

Query: 123 ADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG------FIPYIQNITS 172
             ++I TPGR+ DH           +  +  +V+DEADR+L  G       +P ++    
Sbjct: 257 PHIVIATPGRLADHIRTSGEDTVCGLRRVRFVVLDEADRLLAGGEEGSGSMLPDVEECLG 316

Query: 173 LVP--FTRQTLLFSATMTDELQKVSENFLQNPKR-------IEVNTPSSTAETIEHCFVA 223
            +P    RQTLLF+AT+T E++ + +   + P R       +E   P+    T+   ++ 
Sbjct: 317 ALPPPGKRQTLLFTATVTPEVRAL-KTMPRAPGRPPVFVCEVETQAPA-IPTTLRQLYLD 374

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
               + +    +       + +   IIFCN+      L H L   G  V A+HG + QR 
Sbjct: 375 VPVTHREHYLHVFLSTTHNEALPAVIIFCNRTATAAYLHHLLRLLGHRVTALHGKLPQRQ 434

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L  F+    +++VA+D+AARGLDIPDV  V N+DVP + ++YIHR+GRT RAGR G
Sbjct: 435 RTDNLGRFRAAAARILVATDVAARGLDIPDVALVVNYDVPRQPDDYIHRVGRTARAGRTG 494

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVD-W 370
           +A T V + D+  + AIE  + + ++ W
Sbjct: 495 EAVTFVGQRDVDLVLAIEARVGRPMELW 522


>gi|170084181|ref|XP_001873314.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650866|gb|EDR15106.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 450

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 120/375 (32%), Positives = 193/375 (51%), Gaps = 13/375 (3%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           + P +   +   GY  PT IQ   +P++ +  D+  I+ TGTGKT S++ P+L+ L    
Sbjct: 29  IPPHLFSNLSKCGYSHPTSIQSSGMPVLFESRDLAAISPTGTGKTLSYLFPVLSKLACPL 88

Query: 68  ARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +  + P     R LIL PTRELA Q+ +   +  +     + L          NK +   
Sbjct: 89  SASQDPTKKGARALILAPTRELAHQIHNECLRLTQGRKWRIVLFSKATANSLANKAVRDK 148

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR-QTL 181
            D++I TP R++  +  GKL +N+++ LV+DEADR+LD  F+P +Q I     F+  Q  
Sbjct: 149 VDIIISTPLRLISSYQDGKLELNSVQHLVLDEADRLLDREFLPQVQEIVGACSFSGIQKA 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  E++K++   L+NP R+ V    +    I           SK  +LL  L  S
Sbjct: 209 VFSATLPAEIEKLALEMLRNPIRVVVGLKDTPLPLISQSLTYVADDPSKLPSLLAYL--S 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFS-VCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           Q      ++F + +    +L   L   G S V  +H  + ++ R   +S  ++G   ++V
Sbjct: 267 QPYNPPVLVFTSSQPRATSLAEELVLNGISNVDCLHAGLTRKEREDTISRMRQGQSWVLV 326

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++++ ARG+D   V  V N+D P   ++Y+HRIGRTGRAGR GKA T    ED  ++  I
Sbjct: 327 STEVLARGMDFQGVREVINYDFPTTVQSYVHRIGRTGRAGREGKAVTFFTDEDGPYLKTI 386

Query: 361 EKLIEKK----VDWL 371
             +I +      DW+
Sbjct: 387 ANVILQSGYTVPDWI 401


>gi|169618000|ref|XP_001802414.1| hypothetical protein SNOG_12185 [Phaeosphaeria nodorum SN15]
 gi|160703529|gb|EAT80597.2| hypothetical protein SNOG_12185 [Phaeosphaeria nodorum SN15]
          Length = 498

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 119/362 (32%), Positives = 191/362 (52%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 25  LEFEDFFIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 84

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E+   ++   + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 85  ---ERVNPKISKTQALILVPTRELALQTSQVCKTLGKHLGINVMVSTGGTGLKDDIIRLS 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +G   ++  +  V+DEAD++L   F P ++ +    P  RQ 
Sbjct: 142 DPVHIIVGTPGRILDLAGKGVADLSTCQTFVMDEADKLLSPEFTPVVEQLLGFHPKDRQV 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  + +P  I +     T   I   +   + +  +K   L  L  
Sbjct: 202 MLFSATFPIVVKTFKDKHMNSPYEINL-MDELTLRGITQYYA--FVEEKQKVHCLNTLF- 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 258 NKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLV 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 318 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYRI 377

Query: 361 EK 362
           E+
Sbjct: 378 EQ 379


>gi|194863293|ref|XP_001970368.1| GG23409 [Drosophila erecta]
 gi|190662235|gb|EDV59427.1| GG23409 [Drosophila erecta]
          Length = 526

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 144/442 (32%), Positives = 228/442 (51%), Gaps = 16/442 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +V  +   G    TPIQ K IP +L   D  G A+TG+GKT +F LP   I
Sbjct: 9   FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALP---I 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+          L+L PT ELA Q+++ F   G+   + V ++ GG     +++KL + 
Sbjct: 66  LERLSEEPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQR 125

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++  PGR+ DH         +N++ LV+DEADRML+  F   +  I   +P  RQ L
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKKRQNL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQL- 238
            FSATM D + K S  F       E +  S  +T +T++  ++   A Y +   L++ L 
Sbjct: 186 FFSATMKDFI-KESSIFPIASDCFEWSQDSDVATVDTLDQRYLLC-ADYDRDMVLIEALR 243

Query: 239 -LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             + ++   N +IF N KK    L  +L+        +HG + Q+ R+  LS FK   ++
Sbjct: 244 KYREENESANVMIFTNTKKYCQLLSMTLKNMDIDNVCLHGFMRQKERVAALSRFKSNQVR 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKH 356
            ++A+D+AARGLDIP V  V N  +P   + YIHR+GRT RAGR G + ++     D++ 
Sbjct: 304 TLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLEL 363

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           + AIE+ I  K+     D       +E+I   Q N  R+ + +   +  FD R +NY  +
Sbjct: 364 LGAIEEEINTKLTEHPID----QRMVERI-FMQVNVTRRESEMQLDNNDFDERAQNYRRK 418

Query: 417 KSHIPLKESEKISKLQQDIQEN 438
              +  K+ +++  L +  Q++
Sbjct: 419 TWIMEGKDPDQMEALYRKKQKD 440


>gi|330926544|ref|XP_003301506.1| hypothetical protein PTT_13026 [Pyrenophora teres f. teres 0-1]
 gi|311323638|gb|EFQ90408.1| hypothetical protein PTT_13026 [Pyrenophora teres f. teres 0-1]
          Length = 514

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 140/434 (32%), Positives = 225/434 (51%), Gaps = 29/434 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++FA L ++P +V ++      +PT IQ   IP +L+  D  G ++TGTGKT +F +P  
Sbjct: 84  LNFASLNVAPWLVASLASMEIKRPTGIQASCIPEILKGKDCIGGSRTGTGKTVAFSVP-- 141

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL+K          +I+ PTRELA Q+ +  +      ++   L+ GG    +Q   L 
Sbjct: 142 -ILQKWSEDPSGIFAVIVTPTRELAIQIYEQVKAISAPQSMKPILITGGSDQRSQAIALA 200

Query: 121 RGADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSL 173
               V+I TPGR+ +H           +  ++ +V DEADR+L  G    +P ++   S+
Sbjct: 201 SRPHVVIATPGRLAEHIRTSGEDTICGLRRVKFVVFDEADRLLAPGKGSMLPDLETCLSV 260

Query: 174 VP--FTRQTLLFSATMTDELQKVSENFLQNPKRI-----EVNTPS-STAETIEHCFVATY 225
           +P   +RQTLLF+AT+T E+  +     + P R+     EV+T   +    ++  ++ T 
Sbjct: 261 LPPKESRQTLLFTATVTPEVMALKHQ-PRAPGRLPIFVSEVDTEDLAIPPRLQQKYLQTP 319

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
             + K+C L   L    ++ K+ IIFCN+ K    L + L      V A+H  + Q  R+
Sbjct: 320 VTH-KECYLHVLLNTPVNSNKSVIIFCNRTKTATLLEYMLRLLDHRVTALHSGLKQTDRV 378

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L+ F+    +++VA+D+AARGLDIP+V  V NFDVP   ++YIHR+GRT RAGR G +
Sbjct: 379 SNLARFRAQAARILVATDVAARGLDIPEVALVINFDVPRDPDDYIHRVGRTARAGRVGTS 438

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS---------LNPPLEKIDIAQHNHARKN 396
            T + + D+  I AIE  + KK+D    +  S         L P  EK   A  +     
Sbjct: 439 ITFIGQRDVDLILAIETRVGKKMDEFEEEAVSVEGRVLRDALKPVTEKKREAMLSIEEGR 498

Query: 397 NPIPQKSTGFDRRK 410
           + + ++ TG  +R+
Sbjct: 499 DVLGKRKTGMQKRR 512


>gi|242051997|ref|XP_002455144.1| hypothetical protein SORBIDRAFT_03g005040 [Sorghum bicolor]
 gi|241927119|gb|EES00264.1| hypothetical protein SORBIDRAFT_03g005040 [Sorghum bicolor]
          Length = 644

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 212/379 (55%), Gaps = 33/379 (8%)

Query: 3   FADL--GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           F++L   LSP+VV A+   G+ + TP+Q   IP +L   DV   A TG+GKT +F++P++
Sbjct: 23  FSELSPALSPEVVEALDRGGFQRCTPVQAAAIPHLLSHKDVAVDAATGSGKTLAFIVPVV 82

Query: 61  TILEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEA 114
            IL   R R   P++     LI+ PTREL++Q+ +  + +    N ++  LL+GG+  +A
Sbjct: 83  EIL---RRRSSRPKSHEVLALIISPTRELSSQIFNVAQPFFATLNGVSSMLLVGGLDIKA 139

Query: 115 QNKKLER-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           + KK+E  GA++L+ TPG++ D  +   L   N+EIL++DEADR+LDMGF  +I  I S+
Sbjct: 140 ELKKVEEEGANILVGTPGKLCDIMHTDALEYKNLEILILDEADRLLDMGFQKHINFILSM 199

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVAT-------- 224
           +P  R+T LFSAT T  +  +S+  L+NP R+EV T + ST++      + +        
Sbjct: 200 LPKLRRTGLFSATQTKAVADLSKAGLRNPIRVEVKTEAKSTSKDAGQQELGSSKTPLGLR 259

Query: 225 ----YAQYSKKCALLQQLLQSQDTMKNGIIFC-----NQKKNVVNLCHSLEKQGFSVCAI 275
                 + SKK + L   L      K  + F      +    V+ L +SL  +G  + A 
Sbjct: 260 LEYMICEASKKSSQLVDFLVQNSGKKIMVYFATCACVDYWAVVLPLINSL--KGSPIIAY 317

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG + Q  R K L++F   +  ++V +D+AARGLDIP V  +  +D P     +IHR GR
Sbjct: 318 HGKMKQGLREKALASFSALSSGVLVCTDVAARGLDIPSVDLIVQYDPPQDPNVFIHRAGR 377

Query: 336 TGRAGRHGKAFT-LVAKED 353
           T R  + G A   L+ KED
Sbjct: 378 TARYDQEGDAIVFLLPKED 396


>gi|302902561|ref|XP_003048671.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256729605|gb|EEU42958.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 804

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 119/351 (33%), Positives = 201/351 (57%), Gaps = 12/351 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ L LS      +  + +   T +Q + IPL L+ +DV G A+TG+GKT +F++P+L 
Sbjct: 53  NFSHLPLSVPTASGLEASHFQVLTDVQAQAIPLALKGNDVLGAAKTGSGKTLAFLIPVLE 112

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L + +         LIL PTRELA Q+ +   K G+N+  +  L+IGG   + + ++L+
Sbjct: 113 KLYRAQWTEYDGLGALILSPTRELAVQIFEVLRKVGRNHVFSAGLVIGGKSLKEEAERLD 172

Query: 121 RGADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           R  ++L+CTPGR+L H ++      NN++ILV+DEADR++DMGF   +  +   +P +RQ
Sbjct: 173 R-MNILVCTPGRMLQHLDQTAGFDANNLQILVLDEADRIMDMGFQSAVDALVEHLPKSRQ 231

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVN--TPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           TL+FSAT + ++  ++   L++P+ + V+    S+T  T++  +++T    ++K   L  
Sbjct: 232 TLMFSATQSKKVSDLARLSLKDPEYVSVHEAAASATPTTLQQHYIST--PLTEKLDTLYG 289

Query: 238 LLQSQDTMKNGII-FCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            +++   +K+ II F +  K V  +  S    + G  +  +HG   Q +RM+I S F   
Sbjct: 290 FIKA--NLKSKIIVFLSSGKQVRFVYESFRHLQPGIPLLHLHGRQKQIARMEITSRFTAA 347

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
               + A+D+ ARG+D P V  V   D P   + YIHR+GRT R   +G+A
Sbjct: 348 KHSCLFATDVVARGIDFPAVDWVIQADCPEDVDTYIHRVGRTARYQSNGRA 398


>gi|171683441|ref|XP_001906663.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941680|emb|CAP67334.1| unnamed protein product [Podospora anserina S mat+]
          Length = 816

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 121/372 (32%), Positives = 201/372 (54%), Gaps = 12/372 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L       +  + +   T IQ   IPL L+ HD+ G A+TG+GKT +F++P+L  
Sbjct: 64  FTDLPLCAATASGLRASHFEVLTDIQKAAIPLALKGHDILGAAKTGSGKTLAFLVPVLEK 123

Query: 63  LEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         LI+ PTRELA Q+ +   K G+N+  +  L+IGG   + +  +L R
Sbjct: 124 LVQAQWTEYDGLGALIISPTRELAVQIFEVLRKIGRNHVFSAGLVIGGKSLKEEADRLGR 183

Query: 122 GADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++     +NN+++LV+DEADR++DMGF   +  +   +P TRQT
Sbjct: 184 -MNILVCTPGRMLQHLDQTAGFDVNNLQMLVLDEADRIMDMGFQSAVDALVEHLPKTRQT 242

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVN--TPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +LFSAT +  +  ++   L++P+ +  +   P++T   ++  ++ T     +K   L   
Sbjct: 243 MLFSATQSKRVSDLARLSLKDPEYVSAHEEAPTATPTNLQQSYIVT--PLPEKLDTLWGF 300

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ--GFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +++    K  I+F +  K V  +  S ++   G S+  +HG   Q  RM+I   F     
Sbjct: 301 IRTNLKSKM-IVFFSSGKQVRFVYESFKRMQPGISLLHLHGRQKQVGRMEITRKFTSSKY 359

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             + A+D+ ARG+D P V  V   D P  A+ YIHR+GRT R    G+A   +   + K 
Sbjct: 360 ACLFATDVVARGVDFPAVDWVVQVDCPEDADTYIHRVGRTARYESKGRAVLFLDPSEEKG 419

Query: 357 IDAIEKLIEKKV 368
              + +L +KK+
Sbjct: 420 F--LSRLEQKKI 429


>gi|328848641|gb|EGF97845.1| hypothetical protein MELLADRAFT_46164 [Melampsora larici-populina
           98AG31]
          Length = 659

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 124/356 (34%), Positives = 203/356 (57%), Gaps = 13/356 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L LSP    A+ + G+   T +Q +TIP ++   DV G A+TG+GKT +F++P + 
Sbjct: 128 EFTSLNLSPGTAKAIEEMGFKHMTEVQARTIPPLMTGRDVLGAARTGSGKTLAFLVPAVE 187

Query: 62  ILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L + + + R     +I+ PTRELA Q+    ++  K+++ T A+ IGG   +A+ +KL 
Sbjct: 188 MLSRLQFKPRNGTGAIIVSPTRELALQIFGVAQELMKHHSQTFAITIGGANRKAEAEKLI 247

Query: 121 RGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TR 178
           +G ++LI TPGR+LDH    K  + +N++ L+IDEADR+L++GF   ++ I SL+P   R
Sbjct: 248 KGVNLLISTPGRLLDHLQNTKGFVFSNLKALIIDEADRILEIGFEDEMRKIISLLPSENR 307

Query: 179 QTLLFSATMTDELQKVSENFLQ-NPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALL 235
           Q++LFSAT T ++Q ++   L+  P  I V  N   +T + +E  +V   ++  K+  LL
Sbjct: 308 QSMLFSATQTTKVQDLARISLRPGPLYINVDANKQDATVQGLEQGYVVCESE--KRFLLL 365

Query: 236 QQLLQSQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
              L+     K  + F  CN  K    L + ++        +HG   Q+ R      F  
Sbjct: 366 FTFLKKSLNKKVIVFFSSCNSVKYHGELLNYID---IPALDLHGKQKQQKRTNTFFEFCN 422

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
               +++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT RAG+ G++   +
Sbjct: 423 APTGILLCTDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVGRTARAGKSGRSLLFL 478


>gi|169642132|gb|AAI60762.1| LOC100127243 protein [Xenopus laevis]
          Length = 638

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 125/355 (35%), Positives = 194/355 (54%), Gaps = 14/355 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M+F      P +   +  AGY  PTPIQ++ IP+ L   D+   A TG+GKTA+F+LP +
Sbjct: 223 MEFDHCQFPPVLGSNIKAAGYEVPTPIQMQMIPVGLMERDILASADTGSGKTAAFLLPAI 282

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
           +  LEK  +    P  LIL PTRELA Q+    ++  +   ++  ALL+GG+P   Q  +
Sbjct: 283 IRCLEKKDS----PAALILTPTRELAVQIEGQAKELMRGIPHMRTALLVGGMPLPPQIHR 338

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   ++I TPGR+L+  N+  + + +++IL++DEAD ML MGF   + +I        
Sbjct: 339 LKQAVQIIIATPGRLLEIINQDCVNLGDLKILIVDEADTMLKMGFQQQVLDILEHASHDH 398

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKKCALL 235
           QT+L SAT+   ++  ++  LQ+P RI V   N P S    I    V    + SKK  L 
Sbjct: 399 QTILVSATIPAGIEAFTKQLLQDPVRITVGEKNQPCSNVRQI----VLWVEEPSKKKKLF 454

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK-QGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + L  S+      ++F + +     L  ++ K  G    A+H +  Q  RMKIL    +G
Sbjct: 455 EILNDSKLFQPPVLVFVDCRLGADLLSDAICKITGLECVAMHSDKSQMERMKILQGLLQG 514

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
              ++V++ +  RGLD+ +V  V NFD+P   + Y+H+IGR GR G  G A TL+
Sbjct: 515 EYDVVVSTGVLGRGLDLVNVKLVVNFDMPPSMDEYVHQIGRAGRLGHRGTAITLI 569


>gi|256088516|ref|XP_002580378.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665945|emb|CAZ36617.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 959

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 122/374 (32%), Positives = 195/374 (52%), Gaps = 14/374 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L   ++  + + G+  P+PIQ  +IP+ L   D+   A+ GTGKT ++ +P   +
Sbjct: 553 FEDFCLKRDILKGIYEKGWESPSPIQESSIPIALTHRDIMARAKNGTGKTGAYSVP---V 609

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE     +   + +IL PTRELA Q +    +  K+  + + L+IGG   +    +L + 
Sbjct: 610 LESIDTTINKIQAIILVPTRELALQTSQICIELAKHTAIKIMLVIGGTLLKDDLIRLSQT 669

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             VLI TPGR++D  +RG + ++  +I+V+DEAD++L    I  ++ I + V  +RQ L+
Sbjct: 670 VHVLIGTPGRLVDLLSRGLIDISKCKIVVLDEADKLLSEELISGVEEILNGVDKSRQVLV 729

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           +SAT    +Q      L+NP +I +    +     E+     Y Q   K   L  L  S+
Sbjct: 730 YSATYPVTVQSFMNQHLRNPYQINLMETLTLKGITEY---YAYVQEKHKVHCLNTLF-SK 785

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   IIFC+  + V  L   + + G+S   IH  + Q+ R ++  +F+ G  + +V +
Sbjct: 786 LQISQSIIFCSSAQRVELLAKKITQLGYSCYYIHARMSQQDRNRVFHDFRNGCCRNLVCT 845

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE- 361
           DL  RG+DIP V  V NFD P  +E Y+HRIGR+GR G  G A  LV   D   +  +E 
Sbjct: 846 DLLTRGIDIPTVNVVINFDFPKYSETYLHRIGRSGRFGHLGIAINLVTYADRYSLKTVET 905

Query: 362 ------KLIEKKVD 369
                 K I K++D
Sbjct: 906 ELVTEIKPIPKEID 919


>gi|118404788|ref|NP_001072584.1| probable ATP-dependent RNA helicase ddx6 [Xenopus (Silurana)
           tropicalis]
 gi|123905703|sp|Q0IHV9|DDX6_XENTR RecName: Full=Probable ATP-dependent RNA helicase ddx6; AltName:
           Full=DEAD box protein 6
 gi|114108232|gb|AAI22945.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Xenopus (Silurana)
           tropicalis]
 gi|171847243|gb|AAI61499.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Xenopus (Silurana)
           tropicalis]
          Length = 481

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 117/362 (32%), Positives = 196/362 (54%), Gaps = 8/362 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 96  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 155

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L+  +  ++    +++ PTRELA QV+    +  K+   + V    GG        +L+
Sbjct: 156 RLDLKKDCIQ---AMVIVPTRELALQVSQICIQVSKHMGGVKVMATTGGTNLRDDIMRLD 212

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++I+++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 213 DTVHVVIATPGRILDLIKKGVAKVDHIQMIVLDEADKLLSQDFVQIMEDIIITLPKNRQI 272

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK   + LQ P  I +    +     ++     Y    +K   L  L  
Sbjct: 273 LLYSATFPLSVQKFMTSHLQKPYEINLMEELTLKGVTQY---YAYVTERQKVHCLNTLF- 328

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 329 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 388

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 389 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 448

Query: 361 EK 362
           E+
Sbjct: 449 EE 450


>gi|99080431|ref|YP_612585.1| DEAD/DEAH box helicase-like [Ruegeria sp. TM1040]
 gi|99036711|gb|ABF63323.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TM1040]
          Length = 710

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 121/368 (32%), Positives = 193/368 (52%), Gaps = 6/368 (1%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TIL-EK 65
           L P +  A+   GY   TP+Q       L   D+   AQTG+GKT  F L +  TIL E 
Sbjct: 9   LIPTLQQALERRGYTSLTPVQEAVSNPELAGADLLVSAQTGSGKTVGFGLAIAPTILGED 68

Query: 66  GR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           G   R   P  L++ PTRELA QV         +    +A  +GG+    + + LERGA 
Sbjct: 69  GTFERAASPLALVIAPTRELALQVKRELSWLYGDAGAVLASCVGGMDMRDERRALERGAH 128

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGR+ DH  RG + ++ +  +V+DEAD MLD+GF   ++ I    P  RQTLLFS
Sbjct: 129 IVVATPGRLRDHITRGSIDLSGVAAVVLDEADEMLDLGFREDLEFILEETPEDRQTLLFS 188

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT++  +  +++ +  + +RI     S     I +      A +  + A++  L   +  
Sbjct: 189 ATVSKPIAALAQTYQNDAQRISTINKSEQHSDISY-LAHVVAPHDIENAIINVLRFHE-- 245

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             N I+F N +  V  L   L  +GF V A+ G + Q  R   L   ++G  ++ VA+D+
Sbjct: 246 APNAIVFANTRAAVNRLLTRLSNRGFQVVALSGELSQSERAGALQAMRDGRARICVATDV 305

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           AARG+D+P++  V + D+P+  E  +HR GRTGRAGR G +  +V    ++  + + +  
Sbjct: 306 AARGIDLPNLDLVVHADLPSSHETLLHRSGRTGRAGRKGASALMVTPRSVRKAERLLREA 365

Query: 365 EKKVDWLN 372
           +   +W++
Sbjct: 366 KLSAEWID 373


>gi|115447545|ref|NP_001047552.1| Os02g0641800 [Oryza sativa Japonica Group]
 gi|49388094|dbj|BAD25227.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|113537083|dbj|BAF09466.1| Os02g0641800 [Oryza sativa Japonica Group]
 gi|218191254|gb|EEC73681.1| hypothetical protein OsI_08237 [Oryza sativa Indica Group]
          Length = 483

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 198/361 (54%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 110 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 169

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++ +  +++   +IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 170 KIDQEKNAIQV---VILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIIRLYQ 226

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +L++DEAD++L   F P ++ +   +P +RQ L
Sbjct: 227 PVHLLVGTPGRILDLTKKGICILKDCSMLIMDEADKLLSPEFQPSVEQLIRYLPASRQIL 286

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +++  + +L  P  I +     T + I   +   + +  +K   L  L  S
Sbjct: 287 MFSATFPVTVKEFKDKYLPKPYVINL-MDELTLKGITQFY--AFVEERQKVHCLNTLF-S 342

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 343 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 402

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 403 TDLFTRGIDIQAVNVVINFDFPKTAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 462

Query: 362 K 362
           +
Sbjct: 463 Q 463


>gi|30681173|ref|NP_849348.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|108861892|sp|Q56X76|RH39_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 39
 gi|34365771|gb|AAQ65197.1| At4g09730 [Arabidopsis thaliana]
 gi|51968836|dbj|BAD43110.1| unnamed protein product [Arabidopsis thaliana]
 gi|51969012|dbj|BAD43198.1| unnamed protein product [Arabidopsis thaliana]
 gi|51969674|dbj|BAD43529.1| unnamed protein product [Arabidopsis thaliana]
 gi|332657387|gb|AEE82787.1| DEAD-box ATP-dependent RNA helicase 39 [Arabidopsis thaliana]
          Length = 621

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 189/370 (51%), Gaps = 21/370 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGLS +V+ A+ +     PT IQ   IP V++R  V   + TG+GKT +++LP++ 
Sbjct: 113 NFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQ 172

Query: 62  ILEKGRARV------RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           ++ +  A +      R PRT++L PTREL+ QV    +    +      L+ GG     Q
Sbjct: 173 LMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQ 232

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L    D+++ TPGRIL H   G ++  +I  LV+DEAD M D GF P I+    L P
Sbjct: 233 EDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKF--LAP 290

Query: 176 FTR----------QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
             +          QT+L +ATMT  +QK+ +   Q  + +  +T         H F+   
Sbjct: 291 LNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLS 350

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
               K  ALLQ L  S       ++FCN   +   + H L +   S    HG +    R+
Sbjct: 351 GGEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRV 410

Query: 286 KILSNFK--EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           + L  FK  EG    +V +DLAARGLD+ DV HV  FD P  + +Y+HR GRT R G  G
Sbjct: 411 ENLKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLHRTGRTARMGAKG 469

Query: 344 KAFTLVAKED 353
           K  +LV+++D
Sbjct: 470 KVTSLVSRKD 479


>gi|85706796|ref|ZP_01037887.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius sp. 217]
 gi|85668589|gb|EAQ23459.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius sp. 217]
          Length = 662

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 121/369 (32%), Positives = 196/369 (53%), Gaps = 10/369 (2%)

Query: 9   SPKVVCAVLDA----GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           SP ++ A+ +A    GY   TP+Q       L   D+   AQTG+GKT  F L +   L 
Sbjct: 17  SPMILPALSNALAARGYETLTPVQEAVTDPALSGSDLLVSAQTGSGKTVGFGLAIAPTLL 76

Query: 65  KGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            G  R+         I+ PTRELA QV              +   +GG+    + + LER
Sbjct: 77  DGAERLPPAAAPLALIVAPTRELALQVMRELSWLYAEAGARLVSCVGGMDARDERRALER 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH NRG L M ++  +V+DEAD MLD+GF   ++ + +  P  R+TL
Sbjct: 137 GAHIVVGTPGRLCDHINRGALDMTSLRAIVLDEADEMLDLGFREDLEFMLAAAPAERRTL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+   + K++E F ++  R+   T +     I +  + T   +  + A++  LL+ 
Sbjct: 197 MFSATVPPMIAKLAEKFQRDAHRVTTLTGAKQHADISYQAL-TVVPHDAEGAVI-NLLRY 254

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D  +N I+F N +  V  L   L  +GF+V ++ G + Q  R   L   ++G  ++ VA
Sbjct: 255 HDA-QNAIVFANTRAMVARLTARLANRGFAVVSLSGELSQAERTHALQAMRDGRARVCVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+P++  V + ++P  +E  +HR GRTGRAGR G +  +VA +     + + 
Sbjct: 314 TDVAARGIDLPNLDLVVHAELPTNSEGLLHRSGRTGRAGRKGISALIVAVKSANKAERLL 373

Query: 362 KLIEKKVDW 370
           K  +   +W
Sbjct: 374 KFAKITAEW 382


>gi|327290128|ref|XP_003229776.1| PREDICTED: probable ATP-dependent RNA helicase DDX6-like [Anolis
           carolinensis]
          Length = 484

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 117/362 (32%), Positives = 195/362 (53%), Gaps = 8/362 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 98  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 157

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L+  +  ++    +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 158 RLDLKKDYIQ---AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 214

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++I+++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 215 DTVHVVIATPGRILDLIKKGVAKVDHIQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 274

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK   + LQ P  I +    +     ++     Y    +K   L  L  
Sbjct: 275 LLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQY---YAYVTERQKVHCLNTLF- 330

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 331 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 390

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 391 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 450

Query: 361 EK 362
           E+
Sbjct: 451 EE 452


>gi|95007351|emb|CAJ20571.1| dead-box helicase, putative [Toxoplasma gondii RH]
          Length = 822

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 138/420 (32%), Positives = 228/420 (54%), Gaps = 31/420 (7%)

Query: 3   FADLGLS-PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F  LGLS P  + A+   G+ +PTPIQ + IPL+L+  D   +++TG+GKTA F+LP+L 
Sbjct: 26  FETLGLSTPTSLAAIKGLGFSQPTPIQRRAIPLLLKGKDCILMSRTGSGKTACFLLPLLD 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +  + V + R +++ PTREL AQ+     K   + +L V  L+GG  +  Q   L R
Sbjct: 86  LLGEHSSVVGV-RAVLIAPTRELVAQIHRVCSKLLHSSSLRVCCLLGGENYSKQFLALSR 144

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DVL+ T GR     +   L ++    LV+DEADR+ ++G+   +  + + +P ++Q +
Sbjct: 145 NPDVLLTTVGRGSQLIHDKVLSLSAARFLVLDEADRIFELGWKEQLSMLFAALPASKQVV 204

Query: 182 LFSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           L SAT+  +L   +   L++P+  R+E     S    ++  FV    +      LL+Q +
Sbjct: 205 LVSATLPGDLVNFARLGLRDPEFVRLEKECTLSDDLHMQFLFVRAAQKVPTLLFLLKQSI 264

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q ++ +   ++F + +     L    E+  F    I+G +DQ  R++ L+ FK+G I ++
Sbjct: 265 QKKEQV---LVFASTRHQATFLQCFCERLAFPSAVIYGAMDQTERVQTLAAFKKGKISVL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+AARGLDIP +  V NFD P+ A+ ++HR+GRT RAGR G AF+LV  +D+ +  A
Sbjct: 322 LVTDVAARGLDIPHLPSVINFDFPSSAKLFVHRVGRTARAGRSGTAFSLVTGDDLPY--A 379

Query: 360 IEKLIEKKVDWLNGDLSSLNPPL--------------EKIDIAQHNHARKNNPIPQKSTG 405
           +E +      +L G    L PP               E +D+ +   A K+   P  S+G
Sbjct: 380 VELM-----SFLGG---RLVPPFSFSSEADDTRQEETEDVDLPKPEDASKDTVSPSPSSG 431


>gi|219119937|ref|XP_002180719.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408192|gb|EEC48127.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 822

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 136/464 (29%), Positives = 221/464 (47%), Gaps = 69/464 (14%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           + + GL  +V+  + + G    TP+Q +    V+ R DV G ++TGTGKT +F LP LT 
Sbjct: 139 WIEAGLDQRVIDVLSEKGITSFTPVQAEAFGPVMARRDVIGRSRTGTGKTLAFGLPALTR 198

Query: 62  ---------------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                          +++ GR +V M   +IL PTRELA QV +   +  +   L V + 
Sbjct: 199 LVTFTTENGKRDARGVMKSGR-KVSM---IILCPTRELARQVQEELSQVARPLGLFVEVF 254

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG+ ++ Q++ L +G DV++ TPGR++DH  RG L ++  +I V+DEAD ML+MGF   
Sbjct: 255 HGGVSYDPQSRALRQGVDVIVGTPGRVIDHIERGTLDLSECDIAVLDEADEMLNMGFADD 314

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP---SSTAETIEH 219
           ++    N+ S  P   Q LLFSAT    ++++   + ++   I+       +  AET+ H
Sbjct: 315 VEVVLKNVGSNNPQKTQCLLFSATTPSWVKEIGRQYQKDVLAIDSTADKGGARVAETVRH 374

Query: 220 CFVATYAQYSKKCALLQQLL-----------------------------------QSQDT 244
             V        K ++L+ ++                                     Q  
Sbjct: 375 LAVQLAPGADAKRSVLEDIIAVEISKDADIGKIELEIANPIAAAAHKRKNKGNQAMQQKI 434

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
               I+F   K+    L      +  +  A+HG++ Q+ R   L+ F+ G   ++VA+D+
Sbjct: 435 FGKTIVFTETKREADELVSGGVFKSLTAQALHGDVGQKQRDSTLAAFRSGAFNVLVATDV 494

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           AARG+DI DV  V  FD P   + Y+HR GRTGRAG+ G +  L  +   + I  IE+ +
Sbjct: 495 AARGIDIQDVDLVIQFDPPRDVDTYVHRSGRTGRAGKKGVSVLLFNQRQSRDIVRIERDL 554

Query: 365 EKKVDWLNGDLSSLNPPLEK--IDIAQHNHARKNNPIPQKSTGF 406
                +   DL  + PP  +  ++ A    A     IP+++  F
Sbjct: 555 GHGFKF---DL--VGPPSAEATLNAAAKTSAIATQSIPEETAEF 593


>gi|124505577|ref|XP_001351530.1| eukaryotic initiation factor, putative [Plasmodium falciparum 3D7]
 gi|23498289|emb|CAD49261.1| eukaryotic initiation factor, putative [Plasmodium falciparum 3D7]
 gi|117956286|gb|ABK58711.1| eIF4A-like protein [Plasmodium falciparum]
          Length = 390

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 122/376 (32%), Positives = 195/376 (51%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++G+   ++  +   G+ KP+ IQ + I  +L   DV   +Q+GTGKT  F +  L  
Sbjct: 19  FENIGIDEGLLRGIYAYGFEKPSAIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGALNC 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + +    +   + +IL PTRELA Q            ++T+   IGG       K L  G
Sbjct: 79  VNRN---LNETQVIILSPTRELAEQTQKVCLALADYIHVTIYCCIGGKKMSDDIKALNNG 135

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+  TPGRI    N   L    I+ LVIDEAD ML+ GF   + +I   +    Q +L
Sbjct: 136 VHVISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPNTQIIL 195

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  E+ +++  F+  P +I V     T E I+  FV+   +   K   L  L +S 
Sbjct: 196 SSATLPQEVLEITNKFMHKPVKILVKRDELTLEGIKQFFVSIEKE-QWKYETLADLYESL 254

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   ++FCN +  V  L   + +  F+VC +H  + Q  R  I+  F++   ++++++
Sbjct: 255 -TITQAVVFCNTQMKVDWLTKKMLESNFTVCKMHAGMSQSERDDIMLKFRQCKFRVLIST 313

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+  RGLD+ +V  V N+D+PN  E+YIHRIGR+GR GR G A   V  +DIK +  IE+
Sbjct: 314 DIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQ 373

Query: 363 LIEKKVDWLNGDLSSL 378
               ++D +  +++ L
Sbjct: 374 YYSTQIDEMPMNITEL 389


>gi|301122737|ref|XP_002909095.1| ATP-dependent RNA helicase dbp4, putative [Phytophthora infestans
           T30-4]
 gi|262099857|gb|EEY57909.1| ATP-dependent RNA helicase dbp4, putative [Phytophthora infestans
           T30-4]
          Length = 524

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 125/355 (35%), Positives = 197/355 (55%), Gaps = 17/355 (4%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR-TLIL 78
           G+  PT IQ+ ++P  L   DV   A+TG+GKT +F+LP+L  L + R  V      L++
Sbjct: 78  GFTAPTKIQVGSLPHALAGRDVLAAAKTGSGKTLAFLLPVLEKLFRLRWSVEDGLGALVI 137

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA Q+ +     GK +  +  L+IGG  F  +  +L R  ++LICTPGR+L H  
Sbjct: 138 APTRELALQIFEVLRNVGKAHAFSAGLVIGGKNFREEQLRLIR-MNLLICTPGRLLQHME 196

Query: 139 RGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQTLLFSATMTDELQKVS 195
           +      +N+++LV+DEADR+LD+GF   + +I   +P    RQT+LFSAT T  ++ ++
Sbjct: 197 QTPAFDASNLQVLVLDEADRILDLGFQKQLTSILEHLPPAGERQTMLFSATQTKSVKDLA 256

Query: 196 ENFLQNPKRIEVNTPSS--TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF-- 251
              L+ P+ + V+  S+  T + ++  +V T     +K  +L   ++S    K  I+F  
Sbjct: 257 ALSLREPEYVAVHEHSANATPKGLQQSYVVT--PLERKLDVLLSFIKSHLKQKT-IVFLS 313

Query: 252 -CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
            C Q + V ++   L+  G  +CA+HG   Q  R+++   F      ++ A+D+AARGLD
Sbjct: 314 TCRQVRFVHSVFCKLQP-GIPLCALHGKYKQGKRVEVYYEFLNKPAAVLFATDIAARGLD 372

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
            P V  V   D P  A NYIHR+GRT R  + GKA   +   +   +D + K +E
Sbjct: 373 FPQVDWVLQLDCPEDAANYIHRVGRTARYNKQGKALMCLVPSE---VDGMMKRLE 424


>gi|143456931|sp|Q6H7S2|RH8_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 8
 gi|49388093|dbj|BAD25226.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|215701408|dbj|BAG92832.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222623328|gb|EEE57460.1| hypothetical protein OsJ_07688 [Oryza sativa Japonica Group]
          Length = 508

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 198/361 (54%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 135 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 194

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++ +  +++   +IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 195 KIDQEKNAIQV---VILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIIRLYQ 251

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +L++DEAD++L   F P ++ +   +P +RQ L
Sbjct: 252 PVHLLVGTPGRILDLTKKGICILKDCSMLIMDEADKLLSPEFQPSVEQLIRYLPASRQIL 311

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +++  + +L  P  I +     T + I   +   + +  +K   L  L  S
Sbjct: 312 MFSATFPVTVKEFKDKYLPKPYVINL-MDELTLKGITQFY--AFVEERQKVHCLNTLF-S 367

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 368 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 427

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 428 TDLFTRGIDIQAVNVVINFDFPKTAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 487

Query: 362 K 362
           +
Sbjct: 488 Q 488


>gi|241949959|ref|XP_002417702.1| DEAD/DEAH box helicase , putative [Candida dubliniensis CD36]
 gi|223641040|emb|CAX45414.1| DEAD/DEAH box helicase , putative [Candida dubliniensis CD36]
          Length = 568

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 119/374 (31%), Positives = 204/374 (54%), Gaps = 29/374 (7%)

Query: 11  KVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRAR 69
           K+V  +   GY +PT +Q  +IPL L + DV G+A+TG+GKT +F++P+L  IL      
Sbjct: 165 KLVSIISQLGYDEPTSVQRASIPLALMKRDVVGVAETGSGKTLAFLIPVLNYILSIDENY 224

Query: 70  VRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER-G 122
           ++       P  LIL PTRELA Q+    EK+ K     V  +IGG  ++    ++++ G
Sbjct: 225 LKYEKISNEPVGLILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHQYQDTINQIDQTG 284

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ--- 179
             +++ TPGR++D   R  + ++    LV+DEADRM+DMGF   +  I   +P  +Q   
Sbjct: 285 VHLIVATPGRLVDSIERKIIDLSKCYCLVMDEADRMIDMGFEKDLNKILDKLPTEKQLSS 344

Query: 180 -------------TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF---VA 223
                        T++F+AT++  ++K+++ +L +P  + +       + I   F    +
Sbjct: 345 TIDGRIFHLEKRSTMMFTATISPTVEKITKKYLIDPGYLYIGGAGEALDNINQSFEFLSS 404

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
             A+ +K   L++ +       +N   IIF N K    +L   L     +   IHG+  Q
Sbjct: 405 ATAEATKLNKLIKIIRSHWRVTENPLIIIFANFKHVCDSLSTELSSNDINNVVIHGSKSQ 464

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
             R + ++ F+    ++++A+D+AARG+DIP+V  V N+ +  + + YIHRIGRTGRAG 
Sbjct: 465 DVREQAITKFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGN 524

Query: 342 HGKAFTLVAKEDIK 355
            G++FT ++ +D++
Sbjct: 525 LGESFTFISDQDME 538


>gi|193652513|ref|XP_001948824.1| PREDICTED: probable ATP-dependent RNA helicase DDX10-like
           [Acyrthosiphon pisum]
          Length = 786

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 130/375 (34%), Positives = 198/375 (52%), Gaps = 22/375 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    LS   +  + D  Y  PT IQ ++I   L+  D+ G A+TG+GKT +F++P+L I
Sbjct: 42  FEHFPLSAPTLKGLKDNKYFVPTEIQRESIGYSLRGEDILGAAKTGSGKTLAFLIPVLEI 101

Query: 63  LEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   +  R      LI+ PTRELA Q+ +   K G +++ +  L+IGG   + + K+L++
Sbjct: 102 LYCNKWNRTEGLAALIITPTRELAYQIFETLRKIGIHHDFSAGLIIGGKDLKFERKRLDQ 161

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             +++ICTPGR+L H +   L   +N+ +LV+DEADR LDMGF   + +I   +P  RQT
Sbjct: 162 -CNIMICTPGRLLQHMDENPLFDCSNMLVLVLDEADRCLDMGFQQTMNSIIENLPPERQT 220

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT T  ++ +    L NP  I V+  S      EH   +   Q    C L  ++  
Sbjct: 221 LLFSATQTKSVKDLVRLSLSNPHLISVHEDS------EHSTPSGLVQSYMVCDLHDKMSL 274

Query: 241 SQDTMKNGI-----IF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
               +KN +     +F   C Q K    +   L + G S+ A++G + Q  RM +  +F 
Sbjct: 275 LWSFIKNHLHHKVLVFMSSCKQVKYFYEILCKL-RPGTSLLALYGTMHQTKRMAVYESFS 333

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                ++ A+D+AARGLD P V  V   D P  A  YIHR GRT R  + G++  ++   
Sbjct: 334 RKQRSVLFATDIAARGLDFPAVNWVVQLDCPENANEYIHRAGRTARFQKSGESLLVLLPS 393

Query: 353 DIKHIDAIEKLIEKK 367
           ++    AI K +E K
Sbjct: 394 EL----AILKQLENK 404


>gi|219804752|ref|NP_001137339.1| probable ATP-dependent RNA helicase DDX6 [Bos taurus]
 gi|296480110|gb|DAA22225.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Bos taurus]
          Length = 483

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 195/362 (53%), Gaps = 8/362 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 97  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L+  +  ++    +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 157 RLDLKKDNIQ---AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 214 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK   + LQ P  I +    +     ++     Y    +K   L  L  
Sbjct: 274 LLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQY---YAYVTERQKVHCLNTLF- 329

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 330 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 389

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 390 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449

Query: 361 EK 362
           E+
Sbjct: 450 EE 451


>gi|148273828|ref|YP_001223389.1| putative ATP-dependent helicase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831758|emb|CAN02727.1| putative ATP-dependent helicase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 556

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/374 (34%), Positives = 192/374 (51%), Gaps = 18/374 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+   +V A+   G   P PIQ+ T+P  L   DV G  +TG+GKT +F +PM+  
Sbjct: 49  FGALGVPAPLVSALTANGITTPFPIQVDTLPDTLNGRDVLGRGKTGSGKTLAFAIPMIAR 108

Query: 63  LEKGRARVRMPRTL----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L  G A  R         IL PTRELA Q+        + YNLT   + GG+  + Q   
Sbjct: 109 LGGGLAGGRRRPGRPLGLILAPTRELATQITAAMAPLAEAYNLTTTTIFGGVSQQRQVAA 168

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G DV++  PGR+ D   +G + ++ +EI V+DEAD M D+GF+P +  I    P T 
Sbjct: 169 LKAGVDVVVACPGRLEDLMKQGFVNLDAVEITVLDEADHMADLGFLPVVTRILDKTPNTG 228

Query: 179 QTLLFSATMTDELQKVSENFLQNP---KRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
           Q +LFSAT+ + + K+   +L +       E N+P   A    H F AT  +  +   LL
Sbjct: 229 QRMLFSATLDNGVDKLVRRYLHDQVLHSVDEANSP--VAAMTHHVFEATDVEAKR---LL 283

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            Q L      +  I+F   K +   L   L   G     +HGN+ Q +R + L+ F  G 
Sbjct: 284 VQKLAGGTGRR--ILFMRTKHHAKKLAKQLTDAGIPSVDLHGNLSQVARDRNLAAFSAGD 341

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARG+ + D+  V + D P   + Y+HR GRT RAG  G   T++     K
Sbjct: 342 VKVLVATDVAARGVHVDDIELVIHVDPPAEHKAYLHRSGRTARAGSAGDVVTIMLPAQRK 401

Query: 356 HIDAIEKLIEKKVD 369
            +    +L+ +K D
Sbjct: 402 DV----QLLMRKAD 411


>gi|268553635|ref|XP_002634804.1| Hypothetical protein CBG13909 [Caenorhabditis briggsae]
          Length = 845

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/380 (32%), Positives = 198/380 (52%), Gaps = 27/380 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +  LGL   +  A+   G+ +PTPIQ KTIP ++   DV  +++TG+GKTA+FV+PML  
Sbjct: 26  WQQLGLDHTIFKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L KGR   +  R L++ PTRELA Q     ++ G+   L  A L+GG   E Q   +   
Sbjct: 86  L-KGRD-TKGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDVLEDQFSTIHEN 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+L       L +  ++ +V DEADR+ +MGF   +      +P +RQTLL
Sbjct: 144 PDILLATPGRLLHVIVEMDLRLQFVQYVVFDEADRLFEMGFQDQLTETLKRIPESRQTLL 203

Query: 183 FSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYS--KKCALLQQL 238
           FSAT+   L   ++  L +P   R++V+   S   ++  C      + +    C + + L
Sbjct: 204 FSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPDEKLALLHLCRIFEIL 263

Query: 239 LQSQDTMKNG---------------------IIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
              Q   K G                     ++FC   K+V  +   L + G     ++ 
Sbjct: 264 KIFQKFWKFGNFEKSEFRFFSRRMDRENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYS 323

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
            +D  +R + +  F E    ++V +D+AARG+DIP +  V N   P++A+ Y+HR+GR  
Sbjct: 324 QLDATARKQNIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPSKAKLYVHRVGRVA 383

Query: 338 RAGRHGKAFTLVAKEDIKHI 357
           RAGR G A +L+A +++ ++
Sbjct: 384 RAGRSGTAISLIANDELPYL 403


>gi|229817768|ref|ZP_04448050.1| hypothetical protein BIFANG_03040 [Bifidobacterium angulatum DSM
           20098]
 gi|229785557|gb|EEP21671.1| hypothetical protein BIFANG_03040 [Bifidobacterium angulatum DSM
           20098]
          Length = 741

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 120/372 (32%), Positives = 187/372 (50%), Gaps = 28/372 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG+   +   +   G     PIQ  T+P  L   D+ G  +TG+GKT +F +P++  
Sbjct: 81  FTELGVPGALAHVLASDGKRTAFPIQADTLPDSLAGRDILGRGRTGSGKTLAFSIPLVAR 140

Query: 63  L-------------------EKGRARVRMPR--TLILEPTRELAAQVADNFEKYGKNYNL 101
           L                     G+A   +PR   L+L PTRELA Q+ +      + Y +
Sbjct: 141 LGASEHDIAAIEREADRRGSAGGKAATNLPRPRALVLAPTRELAKQIDEVLLPLAQAYGM 200

Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
           T   + GG+ +  Q  +L+ GA +++  PGR+ D   +  L ++++E +V+DEAD M DM
Sbjct: 201 TTTTVYGGVKYSRQIAELKAGAQIVVGCPGRLEDLLRQNALTLSSVECVVLDEADEMADM 260

Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHC 220
           GF+P ++ +   +P   Q +LFSAT+   + KV E FL +PK   V+  +S   E   H 
Sbjct: 261 GFLPGVERLLGQIPADAQHMLFSATLDHGVDKVVERFLHDPKVHSVDDATSPVDEMTHHV 320

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
           F  T      K  +++ L          I+F   K     L  SL KQG     +HGN++
Sbjct: 321 FEITKGD---KPEIVRTLASGAGKR---ILFTRTKFQAKKLSQSLTKQGIPCAQLHGNLN 374

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q  R + L+ F+ G + ++ A+D+AARG+D+  V  V   + P   + ++HR GRT RAG
Sbjct: 375 QNQRDRNLAAFETGEVNVLAATDVAARGIDVSGVELVVQVEPPEDPKAFLHRSGRTARAG 434

Query: 341 RHGKAFTLVAKE 352
             G   TLV  E
Sbjct: 435 NQGDVVTLVLPE 446


>gi|171686908|ref|XP_001908395.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943415|emb|CAP69068.1| unnamed protein product [Podospora anserina S mat+]
          Length = 576

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 130/385 (33%), Positives = 211/385 (54%), Gaps = 22/385 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+ P +V ++ +    +PT IQ ++IP++L+  D  G ++TG+GKT +F +P+L  
Sbjct: 147 FESLGVRPWLVQSLANMAIKRPTAIQRESIPMLLKGRDCIGGSRTGSGKTVAFSVPILQQ 206

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             +  + +     +IL PTRELA Q+ +  +     ++L   L+ GG    AQ   L + 
Sbjct: 207 WAENPSAIF---GVILTPTRELALQIFEQVKAISSPHSLKAILVTGGADMRAQAIALAQR 263

Query: 123 ADVLICTPGRILDHFNRGKL----LMNNIEILVIDEADRML-DMG---FIPYIQNITSLV 174
             ++I TPGR+ DH           +  +  +V+DEADR+L D G    +P ++   S +
Sbjct: 264 PHIVIATPGRLADHIRTSGYDTVCGLGRVRFVVLDEADRLLADNGPGSMLPDVEECLSAL 323

Query: 175 PFT--RQTLLFSATMTDELQKVSENFLQNPKR-----IEVNTPS-STAETIEHCFVATYA 226
           P    RQTLLF+AT+T E+  + +N  + P R      EV+T   +   T++   +    
Sbjct: 324 PPAEKRQTLLFTATITQEVMAL-KNMPRKPGREPVFVCEVDTEKLAIPPTLKQMHLQVPV 382

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
            + ++  L   LL  Q+  K+ IIFCN+      L H L      + ++H  + QR R+ 
Sbjct: 383 TH-REHYLHMFLLTEQNVHKSIIIFCNRTSTADFLHHLLRLLDHRITSLHSKLPQRQRID 441

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+    +++VA+D+AARGLDIP+V  V N+D+P   ++YIHR+GRT RAGR G A 
Sbjct: 442 NLGRFRASAARILVATDVAARGLDIPEVKMVINYDIPRDPDDYIHRVGRTARAGRKGDAV 501

Query: 347 TLVAKEDIKHIDAIEKLIEKKVD-W 370
           T V + D+  + AIE  + +K++ W
Sbjct: 502 TFVGQRDVDLVLAIEDRVGRKMEAW 526


>gi|261324240|ref|ZP_05963437.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261300220|gb|EEY03717.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
          Length = 537

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 190/347 (54%), Gaps = 10/347 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEK- 65
           ++P +  A+   GY   T +Q   +       D+   AQTG+GKT +F L M  TILE  
Sbjct: 7   IAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMANTILEDE 66

Query: 66  ---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
              G A    P  +I+ PTRELA QV    E    +    +A  +GG+    + + LERG
Sbjct: 67  LRFGDAGA--PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALERG 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGR+ DH  R  L M+ +  +V+DEAD MLDMGF   ++ I    P  R+TL+
Sbjct: 125 SHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDRRTLM 184

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++++ F  N  RI V + +S    I++  +     + +  A++  LL   
Sbjct: 185 FSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPV-PPHERDHAIINTLLYYD 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +N IIFC+ ++ V ++   L  +GF+V A+ G + Q  R   L   ++G  ++ VA+
Sbjct: 244 S--QNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVAT 301

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+P++  V + D+P   +  +HR GRTGRAGR G    +V
Sbjct: 302 DVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVV 348


>gi|332018823|gb|EGI59382.1| Putative ATP-dependent RNA helicase DDX55-like protein [Acromyrmex
           echinatior]
          Length = 589

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/370 (33%), Positives = 207/370 (55%), Gaps = 17/370 (4%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           D+ LS  V+  +   G+   TP+QI  IPL+L   DV   A TG+GKT +F++P+L IL+
Sbjct: 10  DVRLSDSVLKTLRQLGFFNMTPVQIACIPLLLNGKDVAAEAVTGSGKTLAFLIPLLEILQ 69

Query: 65  KGRARVRMPRT--LILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLER 121
           K   + +      +I+ PTRELA Q+++  E++ K   L    LL+GG+  +   +KL++
Sbjct: 70  KRNEKWKTMEVGAIIVSPTRELAIQISEILEEFLKRIPLLKQVLLVGGVTLQKDVEKLKK 129

Query: 122 GADVLICTPGRILD----HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           GA++++ TPGR+ D    + N G L + ++E LV+DEADR+LD+GF   + +I S +P  
Sbjct: 130 GANIIVATPGRLKDILSNYINLG-LYIKSLEFLVLDEADRLLDLGFSATLDSILSYLPRL 188

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALL 235
           R+T LFSAT T EL+++    L+NP  I V   S  ST   +++ F     +Y  K  ++
Sbjct: 189 RRTGLFSATQTKELEQLIRAGLRNPALIVVKEKSNVSTPVNLKNSFTIVQPEY--KLPVI 246

Query: 236 QQLLQSQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
              ++S       +IF   C        +  +L     +V A+HG +  + R K+   F+
Sbjct: 247 IDFIRSVGFKTKYMIFLPTCACVDYFTRVIQTL-LPSINVLALHGKMKSK-RYKVFDKFR 304

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
                +++ +D+ ARG+DI ++  V  +D P+ A +++HR GRT R G  G A   + + 
Sbjct: 305 YAENGILICTDVMARGIDISEIDWVLQYDPPSTASSFVHRCGRTARIGNEGNALLFLLET 364

Query: 353 DIKHIDAIEK 362
           +  ++D I++
Sbjct: 365 ESAYVDFIKR 374


>gi|307103042|gb|EFN51307.1| hypothetical protein CHLNCDRAFT_28229 [Chlorella variabilis]
          Length = 518

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 120/356 (33%), Positives = 192/356 (53%), Gaps = 16/356 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L +S      + +A Y   T +Q   +P  L   DV G A+TG+GKT +F+LP++  
Sbjct: 70  FDELPISEYSKQGLREAKYFSLTAVQRAALPHALCGRDVLGAAKTGSGKTLAFLLPVVEK 129

Query: 63  LEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + R +++     L++ PTRELA Q+ D   K G+ ++ +  LLIGG   + +  ++  
Sbjct: 130 LYRARWSKLDGLGALVISPTRELALQIFDELRKVGRRHDFSAGLLIGGKDVKEEQARVH- 188

Query: 122 GADVLICTPGRILDH------FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           G ++L+CTPGR+L H      F+ G+L     ++LV+DEADR+LDMGF   +  I + +P
Sbjct: 189 GMNILVCTPGRLLQHMDETPGFDAGQL-----QVLVLDEADRILDMGFSATLNAIVANIP 243

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT T  ++ ++   L++P+ I V+  ++    +         +  +K  +L
Sbjct: 244 RQRQTLLFSATQTKSVKDLARLSLKDPEYISVHAEAAAPTPLRLQQAYMVCELPQKLDIL 303

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK--QGFSVCAIHGNIDQRSRMKILSNFKE 293
              +++    K  I+F +  K V  L  +  K   G  + A+HG ++Q  RM +   F E
Sbjct: 304 WSFIKTHLKAKT-IVFVSTCKQVRFLFEAFRKLRPGVPLRALHGKMNQYKRMGVFYEFCE 362

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
               ++ A+D+AARGLD P +  V   D P     YIHR+GRT R    GK   L+
Sbjct: 363 AKAMVLFATDIAARGLDFPTIDWVVQADCPEDVPAYIHRVGRTARYMSSGKGLLLL 418


>gi|269861020|ref|XP_002650226.1| DEAD box RNA helicase p68 [Enterocytozoon bieneusi H348]
 gi|220066356|gb|EED43841.1| DEAD box RNA helicase p68 [Enterocytozoon bieneusi H348]
          Length = 443

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 133/363 (36%), Positives = 194/363 (53%), Gaps = 14/363 (3%)

Query: 1   MDFADLGLSPKVVCAV-LDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           + F DL  S ++V    +  G+  PTPIQ +  P+ L   D+ GIA TG+GKT SF++P 
Sbjct: 27  LSFRDLNFSEELVNFFEVTKGWEHPTPIQSQGWPMALSGRDMIGIAATGSGKTFSFLVPA 86

Query: 60  LTILEKGRARVRM---PRTLILEPTRELAAQ---VADNFEKYGKNYNLTVALLIGGIPFE 113
             I    +  +R    P  ++L PTRELA Q   VA    +     +L    + GG    
Sbjct: 87  Y-IHAADQPSLREGDGPIVIVLAPTRELATQIGNVATELSQLKIFNHLKPLCVYGGANIF 145

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q K L  G ++LI TPGR++D  N+G   +N    LV+DEADRMLDMGF P +  I   
Sbjct: 146 PQKKALVNGIEILIATPGRLIDLHNQGFCPLNRCTFLVLDEADRMLDMGFEPQLNQIIPK 205

Query: 174 VPFTRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPS-STAETIEHCFVATYAQYSKK 231
           +   RQTL++SAT   E++ ++  +  Q+  ++ V        E IE   V   +   K+
Sbjct: 206 INSHRQTLMWSATWPKEVKSLAYRYTSQDAIQVTVGDEELKVNEKIEQR-VEIVSNNDKE 264

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL  L   +D     +IFCN+K     L   L +  F   A+HG+  Q  R  I  NF
Sbjct: 265 KKLLYTLQDFRDARV--LIFCNKKSTCDKLERFLLENRFRGVALHGDKSQHVRDVIFDNF 322

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVA 350
           K+G   +++A+D+AARGLD+ D+  V N+D+P   E+Y+HR+GRT R   + GKA T  +
Sbjct: 323 KKGRDPILIATDVAARGLDVKDIHLVINYDLPTNLEDYVHRVGRTARGTAKEGKALTFFS 382

Query: 351 KED 353
            E+
Sbjct: 383 LEE 385


>gi|148693657|gb|EDL25604.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6, isoform CRA_a [Mus
           musculus]
          Length = 485

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 195/362 (53%), Gaps = 8/362 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 99  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 158

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L+  +  ++    +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 159 RLDLKKDNIQ---AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 215

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 216 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 275

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK   + LQ P  I +    +     ++     Y    +K   L  L  
Sbjct: 276 LLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQY---YAYVTERQKVHCLNTLF- 331

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 332 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 391

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 392 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 451

Query: 361 EK 362
           E+
Sbjct: 452 EE 453


>gi|157817692|ref|NP_001102762.1| hypothetical protein LOC500988 [Rattus norvegicus]
 gi|149041488|gb|EDL95329.1| rCG58047 [Rattus norvegicus]
          Length = 483

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 195/362 (53%), Gaps = 8/362 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 97  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L+  +  ++    +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 157 RLDLKKDNIQ---AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 214 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK   + LQ P  I +    +     ++     Y    +K   L  L  
Sbjct: 274 LLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQY---YAYVTERQKVHCLNTLF- 329

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 330 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 389

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 390 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449

Query: 361 EK 362
           E+
Sbjct: 450 EE 451


>gi|221118846|ref|XP_002163229.1| PREDICTED: similar to Eukaryotic initiation factor 4A-II [Hydra
           magnipapillata]
          Length = 409

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/370 (34%), Positives = 204/370 (55%), Gaps = 9/370 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L   ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 37  NFDDMNLQENLLRGIFAYGFEKPSAIQQRAIMPAIKGYDVIAQAQSGTGKTATFSIAILQ 96

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+         + L+L PTRELA Q+       G    + V   IGG         L  
Sbjct: 97  KLDLSNFN---AQALVLAPTRELAQQIQKVIMALGDYQKVKVHGCIGGTAVRQDLDVLNA 153

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  +RG L  +++++ ++DEAD ML  GF   I ++   +P + Q +
Sbjct: 154 GVHVVVGTPGRVFDMISRGALNTDSLKMFILDEADEMLSRGFKDQIYDVFRRLPSSIQVI 213

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM D++ +V++ F+++P  I V     T E I+  F+    +  K    L+ L   
Sbjct: 214 LLSATMPDDVLEVTKRFMRDPINILVKKEELTLEGIKQFFINVEKEEWK----LETLTDL 269

Query: 242 QDTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            DTM     +IF N ++ V  L   L ++ F+V ++HG++DQ  R  I+  F+ G+ +++
Sbjct: 270 YDTMTITQAVIFLNTRRKVDWLKEKLNEKLFTVSSMHGDMDQSERDLIMKEFRSGSSRVL 329

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V++ED++ +  
Sbjct: 330 ITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVSQEDVRVLKD 389

Query: 360 IEKLIEKKVD 369
           IE     K++
Sbjct: 390 IETFYNTKIE 399


>gi|84684523|ref|ZP_01012424.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84667502|gb|EAQ13971.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 719

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 119/359 (33%), Positives = 190/359 (52%), Gaps = 6/359 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL---PMLTILEKGRARVR 71
           A+ + GY   TP+Q       L   D+   AQTG+GKT  F L   P L   ++      
Sbjct: 28  ALAERGYDTLTPVQEAVSDPDLAGRDLLVSAQTGSGKTVGFGLAIAPTLLGEDEEFGPAG 87

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
           +P  L++ PTRELA QV              +A  +GG+    + + LERGA +++ TPG
Sbjct: 88  LPLALVVAPTRELAMQVKRELIWLFGKTGARLASCVGGMDMRDERRALERGAHIVVGTPG 147

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+ DH  RG L M+ +  +V+DEAD MLD+GF   ++ +    P  R+ LLFSAT+   +
Sbjct: 148 RLRDHIQRGSLDMSELRAIVLDEADEMLDLGFREDLEFMLEEAPEERRILLFSATVPPTI 207

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
            K++E +  +  R+   T ++    I +  +   AQ   + A+   LL+  D+ +N I+F
Sbjct: 208 AKLAEQYQNDAARVNTITGATQHADIAYQAI-RVAQTDTENAIFN-LLRFHDS-ENAIVF 264

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
            N +  V +L   L  +G +V ++ G + Q  R   L   ++G  Q+ VA+D+AARG+D+
Sbjct: 265 ANTRAQVAHLTARLSNRGLNVVSLSGELSQNERTHALQAMRDGRAQVCVATDVAARGIDL 324

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           P++  V + D+P   E+  HR GRTGRAGR G +  +V   D+K  + +    +   +W
Sbjct: 325 PNLDLVIHADLPKNTESLTHRSGRTGRAGRKGISALIVPPRDVKKTERLLGWAKTTAEW 383


>gi|6681159|ref|NP_031867.1| probable ATP-dependent RNA helicase DDX6 [Mus musculus]
 gi|161016793|ref|NP_851841.2| probable ATP-dependent RNA helicase DDX6 [Mus musculus]
 gi|161016795|ref|NP_001104296.1| probable ATP-dependent RNA helicase DDX6 [Mus musculus]
 gi|1709532|sp|P54823|DDX6_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX6; AltName:
           Full=ATP-dependent RNA helicase p54; AltName: Full=DEAD
           box protein 6; AltName: Full=Oncogene RCK homolog
 gi|940408|dbj|BAA09088.1| RCK [Mus musculus]
 gi|18203917|gb|AAH21452.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Mus musculus]
 gi|74138164|dbj|BAE28578.1| unnamed protein product [Mus musculus]
 gi|148693659|gb|EDL25606.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6, isoform CRA_c [Mus
           musculus]
          Length = 483

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 195/362 (53%), Gaps = 8/362 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 97  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L+  +  ++    +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 157 RLDLKKDNIQ---AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 214 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK   + LQ P  I +    +     ++     Y    +K   L  L  
Sbjct: 274 LLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQY---YAYVTERQKVHCLNTLF- 329

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 330 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 389

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 390 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449

Query: 361 EK 362
           E+
Sbjct: 450 EE 451


>gi|148539566|ref|NP_001091916.1| eukaryotic initiation factor 4a [Strongylocentrotus purpuratus]
 gi|126722145|emb|CAM57102.1| eukaryotic initiation factor 4a [Strongylocentrotus purpuratus]
          Length = 426

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/380 (33%), Positives = 206/380 (54%), Gaps = 11/380 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F +   +
Sbjct: 54  NFDDMGLRESLLRGIYAYGFEKPSAIQQRAILPCCEGKDVIAQAQSGTGKTATFAI---S 110

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++     +  + L+L PTRELA Q+       G    +     IGG         L  
Sbjct: 111 ILQQLNVEEKQCQALVLAPTRELAQQIHKVIVALGDYLEVKCHPCIGGTNVRDDMNLLSE 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L    I + V+DEAD ML  GF   I ++ S +P   Q +
Sbjct: 171 GVQVIVGTPGRVFDMLKRKVLSPFKICMFVLDEADEMLSRGFKDQIYDVFSWLPSEVQVV 230

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQL 238
           L SATM  ++ +V++ F+++P RI V     + + I+  ++A   +  K    C L + L
Sbjct: 231 LLSATMPVDVLEVTKKFMRDPIRILVKKEELSLDGIKQFYIAVEKEEWKLDTLCDLYETL 290

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                T+   +IFCN ++ V  LC  + ++ F+V  +H ++DQ+ R KI+  F+ G+ ++
Sbjct: 291 -----TITQAVIFCNTRRKVDWLCQKMHERDFTVSIMHRDMDQKERDKIMKEFRTGSSRV 345

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  ED +++ 
Sbjct: 346 LICTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVPDEDKRNLR 405

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            I++    +VD +  +++ L
Sbjct: 406 DIQQFYNTQVDEMPSNVADL 425


>gi|298252651|ref|ZP_06976445.1| ATP-dependent RNA helicase [Gardnerella vaginalis 5-1]
 gi|297533015|gb|EFH71899.1| ATP-dependent RNA helicase [Gardnerella vaginalis 5-1]
          Length = 609

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 121/363 (33%), Positives = 188/363 (51%), Gaps = 22/363 (6%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA LG+ P+ +  VL A G     PIQ  T+P  LQ  ++ G  +TG+GKT +F +P++ 
Sbjct: 153 FAQLGV-PEPLVEVLRADGKTTAFPIQQATLPDSLQGANILGRGRTGSGKTLAFSIPLVA 211

Query: 62  IL----------EKGR-----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
            L          +K R     + +  PR +IL PTREL  Q+ D        Y +    +
Sbjct: 212 RLAENFVDLIHSDKNRKSRESSEIPAPRAIILAPTRELVHQIDDVIAPLAAAYGMRTVTV 271

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG+ ++ Q  +L++GA +++  PGR+ D   +G L +  + + V+DEAD M DMGF+P 
Sbjct: 272 YGGVRYQRQVSQLKQGAQIVLACPGRLEDLLRQGALTLEKVMVSVLDEADEMADMGFLPA 331

Query: 167 IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
           +  +   V    Q +LFSAT+  ++  + E FL N     V+      +T+ H   A  A
Sbjct: 332 VTRLLEQVAPDGQRMLFSATLDKQVSTLVERFLPNAVVHAVDDADCQVDTMTHHIFAVSA 391

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
               K  +L++L   +   K  I F   K    N+     +QG     + GN+ Q  R +
Sbjct: 392 --GDKYEVLRKLASGR---KRSIFFTRTKYQAKNMAKKFVQQGIPAVDLQGNLSQNQRDR 446

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L+ F EG ++++VA+D+AARG+DI DV  V   + P   ++++HR GRT RAG  G   
Sbjct: 447 HLAVFAEGLVRVLVATDVAARGIDISDVALVVQTEPPEDPKSFLHRSGRTARAGEEGDVV 506

Query: 347 TLV 349
           TLV
Sbjct: 507 TLV 509


>gi|195146542|ref|XP_002014243.1| GL19047 [Drosophila persimilis]
 gi|194106196|gb|EDW28239.1| GL19047 [Drosophila persimilis]
          Length = 386

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 130/377 (34%), Positives = 206/377 (54%), Gaps = 8/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F    + 
Sbjct: 17  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATF---SIA 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    VR  + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 74  ILQQIDTAVRECQALILAPTRELATQIQRVVMALGECTRMPC---IGGTNVREDARILES 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L   +I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 131 GCHVVVGTPGRVYDMINRKVLRTQHIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F++ P  I V     T E I+  F     Q + K   L  L  +
Sbjct: 191 LLSATMPPDVLEVSRCFMREPVSILVKKEELTLEGIKQ-FYVNVKQENWKLGTLCDLYDT 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 250 L-SITQSVIFCNTRRKVDQLTQEMSSHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  +D + +  IE
Sbjct: 309 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIE 368

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 369 QFYHTTIEEMPANIADL 385


>gi|89070055|ref|ZP_01157386.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicola granulosus HTCC2516]
 gi|89044392|gb|EAR50530.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicola granulosus HTCC2516]
          Length = 680

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 194/361 (53%), Gaps = 6/361 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV---R 71
           A+ + GY   T +Q       L++ D+   AQTG+GKT  F L +   L  G  R+    
Sbjct: 8   ALSERGYETLTAVQEAVTDPALEQADLLVSAQTGSGKTVGFGLAIAPTLLAGEERMGPAA 67

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
            P  LI+ PTRELA QV    E         V   +GG+   ++ + LERGA +++ TPG
Sbjct: 68  APLALIVAPTRELAFQVRRELEWLYARTGAQVTSCVGGMDMRSERRALERGAHIVVGTPG 127

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+ DH  RG L + +I  +V+DEAD MLD+GF   ++ + +  P  R+TL+FSAT+   +
Sbjct: 128 RLRDHIQRGSLELESIRAVVLDEADEMLDLGFREDLEFMLAAAPEDRRTLMFSATVPPMI 187

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
             +++++ ++  R+   +       I +  V   AQ   + A++  +L+  D  +N I+F
Sbjct: 188 ATLAKHYQRDAVRVSTQSTGKQHADIAYQAV-KVAQQDAENAII-NILRFHDA-ENAIVF 244

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
            N +  V  L      +GF+V ++ G + Q  R   L   ++G  ++ VA+D+AARG+D+
Sbjct: 245 ANTRAMVARLTARFSNRGFAVVSLSGELSQNERTHALQAMRDGRARVCVATDVAARGIDL 304

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
           P++  V + ++P   E  +HR GRTGRAGR G +  +V  + +K  + + K  +   +W+
Sbjct: 305 PNLDLVVHAELPTNVEGLLHRSGRTGRAGRKGISALVVPPKMVKRAERLLKWAKISAEWI 364

Query: 372 N 372
            
Sbjct: 365 T 365


>gi|294934064|ref|XP_002780961.1| eukaryotic translation initiation factor 4A, putative [Perkinsus
           marinus ATCC 50983]
 gi|239891132|gb|EER12756.1| eukaryotic translation initiation factor 4A, putative [Perkinsus
           marinus ATCC 50983]
          Length = 389

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/359 (34%), Positives = 201/359 (55%), Gaps = 5/359 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ KP+ IQ + I  ++   D  G AQ+GTGKT +F +  L  ++    ++R  + LIL 
Sbjct: 35  GFEKPSAIQSRAIKPLIAGRDTIGQAQSGTGKTGAFTIGCLARVD---PKLRATQALILA 91

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA Q+    +      ++     IGG       +KL  G  V++ TPGR+ D  N+
Sbjct: 92  PTRELAQQITSVTKSLADFLDIKCHACIGGTAVREDIEKLREGQHVVVGTPGRVFDMANK 151

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
             L +++++I V+DEAD ML  GF   I ++  L+P   Q  LFSAT+ D++ +++  F+
Sbjct: 152 RHLRLDDLKIFVLDEADEMLSRGFKDQIYDVFRLLPSNVQVALFSATLPDDIIQLTTKFM 211

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
           ++P RI V T   T E I   ++A  ++   K   L+ L ++  T+   II+CN ++ V 
Sbjct: 212 RDPVRILVKTDELTLEGIRQFYIAIDSE-EYKFDTLKDLYETL-TITQAIIYCNTRRKVD 269

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            L   + +   +V  +H ++ Q  R  I+  F+ G+ ++++++DL ARG+D+  V  V N
Sbjct: 270 YLAEKMHEADHTVSCMHADLTQEERDLIMREFRSGSSRVLISTDLLARGIDVQQVSLVIN 329

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           +D+P   ENY+HRIGR GR GR G A   V  +DIK +  IE+    +VD +  D++  
Sbjct: 330 YDIPASIENYLHRIGRGGRFGRKGVAINFVVPDDIKQLREIERHYNTQVDEMPMDVADF 388


>gi|209876956|ref|XP_002139920.1| ATP-dependent RNA helicase [Cryptosporidium muris RN66]
 gi|209555526|gb|EEA05571.1| ATP-dependent RNA helicase, putative [Cryptosporidium muris RN66]
          Length = 406

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 119/367 (32%), Positives = 192/367 (52%), Gaps = 7/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+FV+P+L 
Sbjct: 34  DFEDYFLKRELLMGIYEKGFERPSPIQEESIPVALAGKDILARAKNGTGKTAAFVIPLL- 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             EK   +    + LIL PTRELA Q +   ++ GK+ ++   +  GG        +L  
Sbjct: 93  --EKINTKKNTIQGLILVPTRELALQTSSIVKQLGKHISVQCMVSTGGTSLRDDILRLNN 150

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL+ TPGR+LD  N+    ++   + ++DEAD++L   F P I+ +   +P  RQ L
Sbjct: 151 PVHVLVGTPGRVLDLANKKVCNLSGCFMFIMDEADKLLSPEFQPIIEELIEFLPKERQIL 210

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    ++   + +L N   I +    +     ++     + +  +K   L  L   
Sbjct: 211 LYSATFPVTVKGFKDKYLSNAHEINLMDELTLKGVTQY---YAFVEEKQKLHCLNTLF-C 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 267 KLQINQAIIFCNSVARVELLAKKITELGSSCFYIHARMLQSHRNRVFHDFRNGACRCLVS 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  L+  ED  ++  IE
Sbjct: 327 SDLITRGIDIQSVNVVINFDFPKYSETYLHRIGRSGRFGHLGLAINLITYEDRYNLYRIE 386

Query: 362 KLIEKKV 368
           K +  ++
Sbjct: 387 KELNTEI 393


>gi|326429375|gb|EGD74945.1| DEAD box polypeptide 47 isoform 1 [Salpingoeca sp. ATCC 50818]
          Length = 711

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 121/354 (34%), Positives = 194/354 (54%), Gaps = 18/354 (5%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--EKGRARVRMPRTLI 77
           GY    PIQ KT  L++  +D+ G A+TG GKT SF LP++  L       R R PR L+
Sbjct: 135 GYKYLFPIQAKTFDLIMAGNDIFGKARTGEGKTLSFALPVIEKLLASPDTTRGRRPRVLV 194

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           + PTRELA+QV   F+K G +  L    + GG  +E Q +    G DV++ TPGR++DH 
Sbjct: 195 MAPTRELASQVWREFQKVGPS--LASTCIYGGTDYEPQRRAFRNGLDVVVGTPGRLMDHM 252

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR----QTLLFSATMTDELQK 193
             G L + N++ LV+DEADRML++GF+  ++ + S+         Q +LFSATM   ++ 
Sbjct: 253 ESGALQLTNLQYLVLDEADRMLEVGFVDTVEKMLSMAVEQAGQKPQMILFSATMPPFIKS 312

Query: 194 VSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ-SQDTMKNGII 250
               ++   K ++      + T+  ++H  +A    +  +  ++  ++Q         +I
Sbjct: 313 TLTKYMPEHKVVDTVGKEMNRTSTGVQH--LALRCPWQARNTVIADVVQVYSGAHGRTMI 370

Query: 251 FCNQKK--NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           F   K+  N + L  +L+++   V  +HG+I Q+ R   L  F++G ++ +VA+D+AARG
Sbjct: 371 FTQTKRDANELALNDTLKQE---VQVLHGDIAQKQRELSLQCFRDGKVRCLVATDVAARG 427

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           +DIP+V  V   + P   E+YIHR GRTGRAGR G           + +  +E+
Sbjct: 428 IDIPEVDLVVQCEPPKDVESYIHRSGRTGRAGRKGTCICFYKPNQEQQLREVER 481


>gi|325192108|emb|CCA26569.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
 gi|325192439|emb|CCA26875.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 648

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 126/369 (34%), Positives = 199/369 (53%), Gaps = 26/369 (7%)

Query: 10  PKVVCAVLDAGYV-KPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
           P+ +   L A  + +PTPIQ++ +P +L   D+ GIA TG+GKT +F LP++    +   
Sbjct: 204 PEAILKALKAKKINRPTPIQVQALPCILSGRDLIGIAFTGSGKTITFTLPLIMFALEEEM 263

Query: 69  RVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIPFEAQNK 117
           ++ +     P  +I+ P+REL  Q  +  + + +  +      L   LLIGG     Q +
Sbjct: 264 KMPIIGQEGPFGIIVGPSRELMRQTFEVVQHFTEALSAAGYPQLRSLLLIGGEDKRTQCE 323

Query: 118 KLER-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            + R G  +++ TPGR+       ++ +   + + +DE DRMLD+GF   +  I +    
Sbjct: 324 LIARKGVHIVVATPGRLNHLLKTNEMNLRLCKYICLDEGDRMLDLGFDEEVSAIFNHFTS 383

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSATM  + Q  ++  L  P  + VN   + A  ++   V    +Y K+ A + 
Sbjct: 384 QRQTLLFSATMPQKFQDFAKQVLVKP--VFVNVGRAGAANLD---VIQEVEYVKQDAKIV 438

Query: 237 QLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            LL+  Q T    +IFC +K +V ++   L  +G     IHG  DQ+ R + +  FK G 
Sbjct: 439 YLLECLQKTGPPVMIFCEKKGDVDDIYEYLILKGIQAVGIHGGKDQKERNEAIDLFKNGQ 498

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE--- 352
             +++A+D+AA+GLD PD+ HV NFD+P   ENY+HRIGRTGR G+ G A T + K    
Sbjct: 499 KDVLIATDIAAKGLDFPDIKHVINFDMPAEIENYVHRIGRTGRCGKTGVATTFINKNVPE 558

Query: 353 ----DIKHI 357
               D+KH+
Sbjct: 559 SVLLDLKHL 567


>gi|8825618|gb|AAF74278.2| vasa-like protein [Danio dangila]
          Length = 399

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 209/386 (54%), Gaps = 31/386 (8%)

Query: 45  AQTGTGKTASFVLPMLT-ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKN 98
           AQTG+GKTA+F+LP+L  ++  G A      V+ P  +I+ PTREL  Q+     K+   
Sbjct: 4   AQTGSGKTAAFLLPILQRLMTDGVAASKFSEVQEPEAIIVAPTRELINQIYLEARKFAYG 63

Query: 99  YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             +   ++ GGI      +++ +G ++L  TPGR+ D   RGK+ ++ +  LV+DEADRM
Sbjct: 64  TCVRPVVVYGGINTGFTIREVLKGCNILCATPGRLHDLIGRGKIGLSKVRYLVLDEADRM 123

Query: 159 LDMGFIPYIQNITSLVPF----TRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSST 213
           LDMGF P ++ + +         RQTL+FSAT  +++Q+++ +FL+ +   + V      
Sbjct: 124 LDMGFEPEMRKLVASPGMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGA 183

Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
              +E   V    QYSK+  LL+ L  + +  +  ++F   K++   +   L ++  S  
Sbjct: 184 CSDVEQTIVQV-DQYSKRDQLLELLRATGN--ERTMVFVETKRSADFIATFLCQEKISTT 240

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
           +IHG+ +QR R K LS+F+ G   ++VA+ +AARGLDI  V HV NFD+P+  + Y+HRI
Sbjct: 241 SIHGDREQREREKALSDFRIGQCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRI 300

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           GRTGR G  G+A +    E      +   L    V  L+G    +   LE++  + H   
Sbjct: 301 GRTGRCGNTGRAVSFFNPE------SDTPLARSLVKVLSGAQQVVPKWLEEVAFSAHG-- 352

Query: 394 RKNNPIPQKSTGFDRRKKNYSSQKSH 419
                    +TGF+ R K ++S  S 
Sbjct: 353 ---------TTGFNPRGKVFASTDSR 369


>gi|223995669|ref|XP_002287508.1| atp-dependent RNA DEAD/DEAH box helicase [Thalassiosira pseudonana
           CCMP1335]
 gi|220976624|gb|EED94951.1| atp-dependent RNA DEAD/DEAH box helicase [Thalassiosira pseudonana
           CCMP1335]
          Length = 416

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 187/361 (51%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF D  L  +++  + + G+ KP+PIQ + IP++LQ  +V   A+ GTGKTA++++P L 
Sbjct: 43  DFEDFFLKRELLMGIFEKGFEKPSPIQEEAIPIILQNRNVLARAKNGTGKTAAYIIPCL- 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             EK        + LIL PTRELA Q +   ++ GK+  +   +  GG   +    +L  
Sbjct: 102 --EKTDTTQTYVQVLILIPTRELALQTSAIVKEIGKHMGIQCMVTTGGTSLKDDIMRLYN 159

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILD  ++    ++    +++DEAD++L   F P ++ I  L     Q  
Sbjct: 160 SVHIIVATPGRILDLASKKVADLSKCRTIIMDEADKLLSTEFQPVLEKIIDLCDKKHQIC 219

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++  + F+ NP  I +     T   I   +   Y +  +K   L  L  S
Sbjct: 220 LFSATFPVTVKEFCQKFVPNPYSINL-MDELTLRGITQFYA--YVEERQKVHCLNTLF-S 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q +R ++   F+ G  + +V 
Sbjct: 276 KLEINQSIIFCNSVNRVELLAKKVTELGYSCYYIHAKMQQANRNRVFHEFRNGATRHLVT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D   +  +E
Sbjct: 336 SDLFTRGIDIQSVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAVNLITYDDRHALRRVE 395

Query: 362 K 362
           +
Sbjct: 396 Q 396


>gi|110430646|gb|ABG73436.1| DEAD/DEAH box helicase family protein [Oryza brachyantha]
          Length = 688

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 190/348 (54%), Gaps = 17/348 (4%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV------RMPRTLILE 79
           PIQ  T  LVL  HD+ G A+TG GKT +FVLP+L  L  G+ +       R P  L+L 
Sbjct: 131 PIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILESLVNGKHKASGADYGRPPSVLVLL 190

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA QV  +FE YG  + L+   + GG  +  Q  K+ +G D+++ TPGR+ D   +
Sbjct: 191 PTRELAKQVHTDFEFYGATFGLSSCCVYGGSEYRPQEMKIRKGVDIVVGTPGRVKDFVQK 250

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTR-QTLLFSATMTDELQKVSEN 197
           G L   +++  V+DEAD ML+MGF+  ++ I   V   T+ QTLLFSAT+ D + K+S  
Sbjct: 251 GTLNFKSLKFRVLDEADEMLNMGFVDDVELILGKVEDVTKVQTLLFSATLPDWVGKLSLR 310

Query: 198 FLQNPKR---IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           FL+  K+   +  +     + ++ H  +A     + +  ++  +++        IIF   
Sbjct: 311 FLKPGKKTVDLVGDEKLKASASVRH--LALPCNRAARAQVIPDIIRCYSRGGRTIIFTET 368

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K++   L   +        A+HG++ Q  R  IL+ F+ G   ++VA+++AARGLDI DV
Sbjct: 369 KESASELSGLIAGS----RALHGDVAQAQREVILAGFRSGKFLVLVATNVAARGLDINDV 424

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
             +   + P   E YIHR GRTGRAG  G A  L       +++ IE+
Sbjct: 425 QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFDPRHKFNVNRIER 472


>gi|52081051|ref|YP_079842.1| DEAD/DEAH box ATP dependent helicase YqfR [Bacillus licheniformis
           ATCC 14580]
 gi|52786429|ref|YP_092258.1| YqfR [Bacillus licheniformis ATCC 14580]
 gi|52004262|gb|AAU24204.1| DEAD/DEAH box ATP dependent helicase YqfR [Bacillus licheniformis
           ATCC 14580]
 gi|52348931|gb|AAU41565.1| YqfR [Bacillus licheniformis ATCC 14580]
          Length = 439

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 131/400 (32%), Positives = 205/400 (51%), Gaps = 15/400 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L P ++ AV   G+ +PT IQ + IP  L+     G +QTGTGKT +++LP+L+ 
Sbjct: 6   FEMYDLKPFIIEAVHHLGFYEPTDIQKRLIPAALKGESAIGQSQTGTGKTHAYLLPLLSR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEK----YGKNYNLTVALLIGGIPFEAQNKK 118
           ++  +  V++   +I  PTRELA Q+     K     G +  +     IGG   +    K
Sbjct: 66  IDPEKEFVQV---VITAPTRELANQIHQEVLKITKFLGPDEAIRSKCFIGGTDKQKSIDK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+    +++ TPGRI D      L ++     VIDEAD MLDMGF+  +  I S +P   
Sbjct: 123 LKTQPHLVVGTPGRIADLIREQALDVHKAGSFVIDEADLMLDMGFLEDVDFIGSHMPEGL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+   + ++ NP+   V     TAE IEH  + +  ++  K  LL ++
Sbjct: 183 QMLVFSATIPEKLKPFLKKYMANPRYAHVEPKHITAEKIEHVLIPS--RHRDKNELLLEV 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   +     I+F N K     +   L  +G  V  +HG +  R R K++    +     
Sbjct: 241 MTHLNPY-LAIVFANTKTTADEIAAYLTDKGMKVGLLHGGLTPRERKKVMKQIGDLEFTY 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+DLAARG+DI  V HV N+++P+  + Y+HR+GRT RAG  G A T     D    D
Sbjct: 300 IIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGTSGTAVTFY---DTSDED 356

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           A+ KL +  + + N  +       +KID  +    RK  P
Sbjct: 357 ALVKLEQMGIVFENMRIEKGE--WKKIDDRKRRQNRKRTP 394


>gi|288904629|ref|YP_003429850.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           gallolyticus UCN34]
 gi|288731354|emb|CBI12905.1| putative ATP-dependent RNA helicase, DEAD/DEAH box family
           [Streptococcus gallolyticus UCN34]
          Length = 447

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 124/366 (33%), Positives = 196/366 (53%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D    P +  A+ +  +  PT +Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFNDFNFKPYIREALAELKFTNPTEVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKK 118
             L++    V++   +I  P+RELA Q+    ++  +     + VA  +GG     Q +K
Sbjct: 61  EKLDENSNNVQV---VITAPSRELATQIYQATKQIAEKSETEIRVANYVGGTDKLRQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+     ++I TPGRI D    G L +      V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LQSSQPHIVIGTPGRIYDLVKSGDLEIYKAHTFVVDEADMTLDMGFLDTVDKIAGTLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  V+T  +   K A + +
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEKIKTTTVIADTIDNWLVSTKGR--DKNAQILE 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + ++ +     +IF N K+    L   L   G  V  IHG+I  R R + ++  K+ + +
Sbjct: 236 ITKALNPYL-AMIFVNTKERADELHSYLVSNGLKVAKIHGDIPPRERKRTMNQIKKLSYE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G +G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLNGIAITLYKPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 RELEKM 360


>gi|242053633|ref|XP_002455962.1| hypothetical protein SORBIDRAFT_03g028090 [Sorghum bicolor]
 gi|241927937|gb|EES01082.1| hypothetical protein SORBIDRAFT_03g028090 [Sorghum bicolor]
          Length = 588

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/362 (35%), Positives = 199/362 (54%), Gaps = 15/362 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---M 59
           F    +SP  + AV DAGY + T +Q  T+P++LQ  DV   A+TGTGKT +F+LP   +
Sbjct: 123 FDQCAISPLSLKAVKDAGYERMTEVQAATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEV 182

Query: 60  LTILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNK 117
           L+ L + R ++R P   L++ PTRELA QVA    K  + + +L V ++IGG     + +
Sbjct: 183 LSTLPRERNQLRPPINLLVMCPTRELANQVAVEARKLLRYHRSLGVQVVIGGTRLTQEQR 242

Query: 118 KLERG-ADVLICTPGRILDHFNRGKLL---MNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            ++     +L+ TPGR+ DH          +  +++LV+DEADR+LDMGF   I+ I + 
Sbjct: 243 SMQANPCQILVATPGRLKDHLENTPGFSSRLKGVKVLVLDEADRLLDMGFRRDIEKIIAS 302

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQYSKK 231
           +P  RQTLLFSAT+ +E++++S   ++   R  VNT     E         Y  A     
Sbjct: 303 IPRERQTLLFSATVPEEVRQISHVAMKKDYRF-VNTVKEGDEETHAQVSQMYMVAPLDLH 361

Query: 232 CALLQQLLQ---SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            ++L  +L+   ++D     IIFC        +   L +   ++  IH    Q +R K+ 
Sbjct: 362 FSILYDVLKKHVAEDADYKVIIFCTTAMVTKLVAEVLSQLKLNIREIHSRKSQSARTKVS 421

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             F++    ++V+SD++ARG+D PDV  V    +P   E YIHR+GRTGR G+ G+   L
Sbjct: 422 DEFRKSKGLILVSSDVSARGVDYPDVTLVIQVGIPADREQYIHRLGRTGRKGKEGQGLLL 481

Query: 349 VA 350
           +A
Sbjct: 482 LA 483


>gi|224542119|ref|ZP_03682658.1| hypothetical protein CATMIT_01294 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524956|gb|EEF94061.1| hypothetical protein CATMIT_01294 [Catenibacterium mitsuokai DSM
           15897]
          Length = 457

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 111/344 (32%), Positives = 190/344 (55%), Gaps = 8/344 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           +  PTPIQ K IPLV +  D+ GI+QTGTGKT SF++P++  ++     V+    +I  P
Sbjct: 22  FTSPTPIQDKVIPLVYKNKDIIGISQTGTGKTHSFLIPIIDRIDTNADYVQ---AVITTP 78

Query: 81  TRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD-HFN 138
           TRELA Q+ +N +++ K N +L ++L+IGG   +    KL     ++I TPGRI D   N
Sbjct: 79  TRELAHQIYENAKEFKKENPDLRISLVIGGSDKQKAINKLSTQPHIVIGTPGRIKDLSLN 138

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
              L++      V+DEAD  L+ G++  +  + S +    Q L+FSAT+ + L      +
Sbjct: 139 EQALIITTATTFVVDEADMTLEYGYLEDLDAVLSKMREDLQMLVFSATIPEHLWPFLRKY 198

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           +  P+ ++++    T +  +H  + T  ++  +  +L+ ++   D     +IFCN++   
Sbjct: 199 MNAPELVQIDAHKKTTDNTKHYLIHT--KHHDRYTVLKNIMDIIDPYI-CLIFCNKRTEA 255

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             L   L   G+ V  IHG+++ R R +++        Q +VA+D+AARG+DI  V HV 
Sbjct: 256 TKLSDQLRSDGYRVGEIHGDLEPRERKQMMRRINNNEYQYIVATDIAARGIDIDGVSHVI 315

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           N + P   + YIHR GR GR    G+ +++    + + ++++EK
Sbjct: 316 NMEFPTERDFYIHRSGRCGRGKYKGECYSMYDSSNQQMVESLEK 359


>gi|308070585|ref|YP_003872190.1| RNA helicase yqfR [Paenibacillus polymyxa E681]
 gi|305859864|gb|ADM71652.1| Probable RNA helicase yqfR [Paenibacillus polymyxa E681]
          Length = 463

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 108/349 (30%), Positives = 201/349 (57%), Gaps = 6/349 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F  LG+   ++  + +    +P+P+Q + IP +++   V   +QTGTGKT +++LP+L
Sbjct: 3   LNFESLGVEQDLLDKLTEHEITQPSPVQAEAIPEIIKGKHVLARSQTGTGKTLAYLLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  +   +  + LIL P++ELA Q+    ++YG++  + V  LIGG   + Q +KL+
Sbjct: 63  QAIDPQK---KATQKLILAPSQELAMQIVREGQRYGEHRGIRVLGLIGGAAIKRQIEKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ +     KL M+NI  +VIDE D+M  +G    + NI       RQ 
Sbjct: 120 DHPQLVVGTPGRVRELIASKKLKMHNITAIVIDEVDQMFQLGGAGDVTNILGTAQRDRQL 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +  SAT+ DE+Q +++  +++   I ++    TA  +EH +  +  +   K  +L++L++
Sbjct: 180 VFLSATLNDEIQSLAKREMRDYVEIGIDPDQKTASGLEHYYFVS--EERDKVDMLRRLVR 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  K  ++F N    +  +   L+  G +  +++G+ D+ +R  +L+ F+E  ++++V
Sbjct: 238 HFNPRK-ALVFVNTTNAIGEIEAKLKHMGLTTASLYGDADKVTRSNVLARFREDKLKVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           ASD+AARGLDI  +  V +FD    ++ Y+HR GRTGR GR G   ++V
Sbjct: 297 ASDVAARGLDIEGLEMVIHFDPATDSQAYVHRAGRTGRMGRKGLVASVV 345


>gi|225856436|ref|YP_002737947.1| ATP-dependent RNA helicase [Streptococcus pneumoniae P1031]
 gi|225725948|gb|ACO21800.1| ATP-dependent RNA helicase [Streptococcus pneumoniae P1031]
          Length = 447

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 125/366 (34%), Positives = 192/366 (52%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   + ++ V ++  +GG     Q +K
Sbjct: 61  QQLDEASDSVQ---AVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIADSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T      K A + Q
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGH--DKNAQIYQ 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L QS       +IF N K     L   L  QG  V  IHG+I  R R +I++  +    +
Sbjct: 236 LTQSMQPYL-AMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EKL
Sbjct: 355 RELEKL 360


>gi|23099394|ref|NP_692860.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831]
 gi|22777623|dbj|BAC13895.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 432

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 132/389 (33%), Positives = 204/389 (52%), Gaps = 25/389 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L+P V   +    +  PT IQ K IP +++   V G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFEDLQLNPIVNDVIEQLKFKNPTEIQEKVIPAIIKGDSVVGQSRTGSGKTHAFLLPLF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVA---------LLIGGI 110
             LE  +  V+    +I  PTRELA Q+      YG+  N+ T+A         LL+GG 
Sbjct: 61  HGLESDKKEVQF---VITAPTRELATQL------YGEVRNIITLADKTKEWNAKLLVGGT 111

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             +   +KL+    +++ TPGRILD    G L +   +  V+DEAD MLD+GFI  +  +
Sbjct: 112 DKQKMTEKLKTPPHIIVGTPGRILDLVKSGALSIYTAKSFVVDEADLMLDLGFIEEVDQL 171

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                   Q L+FSAT+   LQ   + +++NP  +++N   S  E ++H  +    ++  
Sbjct: 172 LVRSKQDIQLLVFSATIPQRLQHFFKKYIKNPLNVKINEHFS-PEKMDHRLIR--KKHRN 228

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++ ++ QS       +IF N K+    L   L + G  V  IHG +  R R ++L  
Sbjct: 229 EAEIIWEISQSIHPYL-ALIFTNGKQQANELADQLLEYGLEVGVIHGGLTPRERKRVLKE 287

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
            +    Q +VA+DLAARG+DI  V HV N  +P     YIHR+GRT RAG  G A ++  
Sbjct: 288 IQNLRYQYVVATDLAARGIDIKGVSHVINAQIPKEESFYIHRVGRTARAGLEGTAISIYD 347

Query: 351 KEDIKHIDAIEK--LIEKKVDWLNGDLSS 377
             D+  I  +E+  LI + V+  NG+  +
Sbjct: 348 DNDLSLIQRLEQKGLIFEFVEVKNGEWKT 376


>gi|311264024|ref|XP_003129962.1| PREDICTED: probable ATP-dependent RNA helicase DDX6-like [Sus
           scrofa]
          Length = 483

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 195/362 (53%), Gaps = 8/362 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 97  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L+  +  ++    +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 157 RLDLKKDNIQ---AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 214 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK   + LQ P  I +    +     ++     Y    +K   L  L  
Sbjct: 274 LLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQY---YAYVTERQKVHCLNTLF- 329

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 330 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 389

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 390 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449

Query: 361 EK 362
           E+
Sbjct: 450 EE 451


>gi|1764094|gb|AAB39865.1| ATP-dependent RNA helicase [Leishmania amazonensis]
          Length = 855

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 121/361 (33%), Positives = 196/361 (54%), Gaps = 9/361 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ A+L  G+  PTPIQ K IP +LQ +DV  +A+TG+GKTA+F++PML  
Sbjct: 26  FQSFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLNT 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  +++   R L+L PTREL+ Q+  N     K  +L  A L+GG   + Q + L   
Sbjct: 86  L-KAHSKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDSMDQQFELLASN 144

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+L       L + ++  LV+DEADR+ ++G  P I  I   +P + Q  L
Sbjct: 145 PDIVVATPGRLLHIMEEASLHLTSVRCLVLDEADRLFELGLQPQIGAIMQKLPESCQRAL 204

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCALLQQLLQ 240
           FSATM   L + +  +L NP  I +++    ++ ++     V    + +    LL+++L 
Sbjct: 205 FSATMPTVLAEFTSAWLHNPVVIRLDSEMKLSDQLKQSAFLVRNDEKVAALIVLLKRVLH 264

Query: 241 SQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             +   N    +IF   K +V  L   L     S  A+HG +DQ +R   + +F +    
Sbjct: 265 VGEAAANNAQALIFVESKFHVEFLLMILTAYSISTSAVHGQMDQEARRLAVRSFAKRESS 324

Query: 298 LMVASDLAAR--GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +MV +D+AAR  GLD+  + ++  F  P   + ++HR+GR  RAGR G A++++  ED  
Sbjct: 325 VMVVTDVAARGYGLDLL-LDNIVYFSFPFNPKLFVHRVGRVARAGRSGTAYSIMTFEDFP 383

Query: 356 H 356
           +
Sbjct: 384 Y 384


>gi|458727|dbj|BAA04482.1| RCK [Homo sapiens]
 gi|189053803|dbj|BAG36055.1| unnamed protein product [Homo sapiens]
          Length = 472

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 195/362 (53%), Gaps = 8/362 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 86  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 145

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L+  +  ++    +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 146 RLDLKKDNIQ---AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 202

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 203 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 262

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK   + LQ P  I +    +     ++     Y    +K   L  L  
Sbjct: 263 LLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQY---YAYVTERQKVHCLNTLF- 318

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 319 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 378

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 379 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 438

Query: 361 EK 362
           E+
Sbjct: 439 EE 440


>gi|294851527|ref|ZP_06792200.1| ATP-dependent RNA helicase DeaD [Brucella sp. NVSL 07-0026]
 gi|294820116|gb|EFG37115.1| ATP-dependent RNA helicase DeaD [Brucella sp. NVSL 07-0026]
          Length = 626

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 119/347 (34%), Positives = 190/347 (54%), Gaps = 10/347 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEK- 65
           ++P +  A+   GY   T ++   +       D+   AQTG+GKT +F L M  TILE  
Sbjct: 7   IAPALSGALTARGYNTLTAVRNAVLAPETLASDLLVSAQTGSGKTVAFGLAMANTILEDE 66

Query: 66  ---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
              G A    P  +I+ PTRELA QV    E    +    +A  +GG+    + + LERG
Sbjct: 67  LRFGDAGA--PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALERG 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGR+ DH  R  L M+ +  +V+DEAD MLDMGF   ++ I    P  R+TL+
Sbjct: 125 SHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDRRTLM 184

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++++ F  N  RI V + +S    I++  +     + +  A++  LL   
Sbjct: 185 FSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPV-PPHERDHAIINTLLYYD 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +N IIFC+ ++ V ++   L  +GF+V A+ G + Q  R   L   ++G  ++ VA+
Sbjct: 244 S--QNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVAT 301

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+P++  V + D+P   +  +HR GRTGRAGR G    +V
Sbjct: 302 DVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVV 348


>gi|319935450|ref|ZP_08009887.1| helicase [Coprobacillus sp. 29_1]
 gi|319809666|gb|EFW06079.1| helicase [Coprobacillus sp. 29_1]
          Length = 455

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 115/364 (31%), Positives = 200/364 (54%), Gaps = 12/364 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +     +P V   + +  +  PT IQ + IPLV ++ D+ GI+QTGTGKT +F++P++ +
Sbjct: 4   YEQYQFNPFVKQTITELKFESPTKIQKEIIPLVYKQRDIIGISQTGTGKTHAFLIPIMDM 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADN---FEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           ++     V+    +I  PTRELA+Q+ ++   F KY  N +L V+L+IGG   +    KL
Sbjct: 64  IDVTSDCVQ---AVITAPTRELASQIYEHAKLFMKY--NQDLRVSLIIGGSDKQKAIDKL 118

Query: 120 ERGADVLICTPGRILD-HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                ++I TPGRI D   +   L +   ++ VIDEAD  L+ G++  I  +   +    
Sbjct: 119 TIQPHIVIGTPGRIKDLSLDEQALKITTADVFVIDEADMTLEFGYLEDIDAVLGKMKENL 178

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT+   L+   + ++QNPK +E++   +T   + H  + T  ++  +  +L+Q+
Sbjct: 179 QMMVFSATIPQMLRPFLQKYMQNPKLVEIDEELTTTRNVSHYLIPT--KHRDRYQILKQI 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   D     ++FCN++    +L   L   G+ V  IHG+++ R R +++   K    Q 
Sbjct: 237 MGIIDPY-ICLVFCNKRTEAADLTMKLRNDGYKVGEIHGDLEPRERRQMMRRIKNMDYQY 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI    H+ N + P   + YIHR GR GR    G+ +++    +   + 
Sbjct: 296 IVATDIAARGIDIDGASHIINMEFPTELDFYIHRSGRCGRGKYTGECYSMYDTSNQNIVQ 355

Query: 359 AIEK 362
           A+EK
Sbjct: 356 ALEK 359


>gi|225681661|gb|EEH19945.1| ATP-dependent rRNA helicase rrp3 [Paracoccidioides brasiliensis
           Pb03]
          Length = 469

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 190/366 (51%), Gaps = 23/366 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+   +  A    GY  PTPIQ + IPL LQ  D+ G+A+TG+GKTA+F LP+L  
Sbjct: 58  FKDLGVIDSLCEACEALGYKTPTPIQTEAIPLALQGRDLIGLAETGSGKTAAFALPIL-- 115

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             +G     + RT    P  +  +Q A              A+++GG+    Q   L + 
Sbjct: 116 --QGELLSFLLRTHWGNPANDPLSQSA-------------CAVIVGGMDMVPQAIALGKE 160

Query: 123 ADVLICTPGRILDHFNRGKLLM--NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
                 TPGR+LDH    K          LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 161 TSHHRRTPGRLLDHLENTKGFSPPATSNTLVMDEADRLLDLDFGPILDKILKVLPRERRT 220

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQLL 239
            L SATM+ +++ +    L NP R+ +++    T  T+   F+    +Y  K   L  LL
Sbjct: 221 YLLSATMSSKVESLQRASLSNPLRVSISSSKYQTVSTLLQTFLFIPHKY--KDIYLVYLL 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   ++ IIF         L   L   GF    +HG + Q  R+  L  F+  +  ++
Sbjct: 279 -NEFAGQSAIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSYRLGALGKFRSRSRDIL 337

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V NFD+P  ++ YIHR+GRT RAG+ G AF+ V + D++    
Sbjct: 338 VATDVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFSFVTQYDLEVWLR 397

Query: 360 IEKLIE 365
           IE  ++
Sbjct: 398 IENALD 403


>gi|73662507|ref|YP_301288.1| helicase [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72495022|dbj|BAE18343.1| putative helicase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 446

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 118/365 (32%), Positives = 195/365 (53%), Gaps = 15/365 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + +PT IQ + IP ++++ ++ G +QTGTGK+ +F+LP+L  
Sbjct: 6   FEKFNLEAGLIDAVKDLNFNQPTEIQTRVIPKIIKQVNLIGQSQTGTGKSHAFLLPLLNS 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQ---VADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           ++      + P+ +++ PTRELA Q   VA +  ++ ++  ++V L IGG   E    ++
Sbjct: 66  ID---TDYKEPQAIVVAPTRELAQQLFDVASHLTRFKED--VSVKLFIGGTDIEKDRSRV 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    ++I TP RI D    G L ++    LVIDEAD M+D+G I  +  + + +     
Sbjct: 121 KNQPQLIIGTPTRINDLAKHGDLHVHLASYLVIDEADLMIDLGLIDEVDYVATRLDENAH 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +FSAT+   L      +L+NP+ +E+       + IE   + T  +     A +++ L
Sbjct: 181 IAVFSATIPKSLHPFLNKYLENPEFVEIENTEKNKKNIEFYLIPTKGE-----AKIEKTL 235

Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  D +     IIFCN + +   L   L   G  +  IHG +  R R + +   +    Q
Sbjct: 236 KLIDILNPYLCIIFCNSRDSADELAKQLNAAGLKLGMIHGGLTPRERKQQMKRIRNLEFQ 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++ASDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I
Sbjct: 296 FVIASDLASRGIDIDGVSHVINFDVPNDIDFFTHRVGRTGRGQYKGVAITLYSPDEEHNI 355

Query: 358 DAIEK 362
             IE+
Sbjct: 356 ALIEQ 360


>gi|164664518|ref|NP_004388.2| probable ATP-dependent RNA helicase DDX6 [Homo sapiens]
 gi|114640683|ref|XP_508798.2| PREDICTED: probable ATP-dependent RNA helicase DDX6 isoform 2 [Pan
           troglodytes]
 gi|332208418|ref|XP_003253300.1| PREDICTED: probable ATP-dependent RNA helicase DDX6 [Nomascus
           leucogenys]
 gi|332837881|ref|XP_003313402.1| PREDICTED: probable ATP-dependent RNA helicase DDX6 isoform 1 [Pan
           troglodytes]
 gi|116241327|sp|P26196|DDX6_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX6; AltName:
           Full=ATP-dependent RNA helicase p54; AltName: Full=DEAD
           box protein 6; AltName: Full=Oncogene RCK
 gi|40675584|gb|AAH65007.1| DDX6 protein [Homo sapiens]
 gi|261858306|dbj|BAI45675.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [synthetic construct]
 gi|312152252|gb|ADQ32638.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [synthetic construct]
          Length = 483

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 195/362 (53%), Gaps = 8/362 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 97  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L+  +  ++    +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 157 RLDLKKDNIQ---AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 214 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK   + LQ P  I +    +     ++     Y    +K   L  L  
Sbjct: 274 LLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQY---YAYVTERQKVHCLNTLF- 329

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 330 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 389

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 390 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449

Query: 361 EK 362
           E+
Sbjct: 450 EE 451


>gi|319947567|ref|ZP_08021797.1| ATP-dependent RNA helicase DbpA [Streptococcus australis ATCC
           700641]
 gi|319746255|gb|EFV98518.1| ATP-dependent RNA helicase DbpA [Streptococcus australis ATCC
           700641]
          Length = 447

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 126/367 (34%), Positives = 194/367 (52%), Gaps = 11/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ +  +++ T +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTDFKFKDYIQEALKEINFIEATEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKK 118
             L +  + V +   +I  P+RELA Q+     +   +    + +A  +GG     Q  K
Sbjct: 61  QTLNEDSSHVEV---VITAPSRELATQIYQAARQIASHCEKEVRIANYVGGTDKARQIDK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+     ++I TPGRI D    G L ++     V+DEAD  LDMGF+  +  I S +P  
Sbjct: 118 LQIAQPHIVIGTPGRIYDLVASGDLAIHKAHTFVVDEADMTLDMGFLTTVDKIASSLPKQ 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQ 236
            Q L+FSAT+  +LQ   + +L NP   ++ T +  ++TI++  V+T  +  +++   L 
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVMEQIKTKTVISDTIDNWLVSTKGRDKNEQIYQLT 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q LQ    M    IF N K    +L   L ++G  V  IHG +  R R +I++  K    
Sbjct: 238 QALQPYLAM----IFVNTKDRADDLHAFLVEKGLKVAKIHGGVPPRERKRIMNQVKNLDF 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   
Sbjct: 294 EYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSD 353

Query: 357 IDAIEKL 363
           I  +EKL
Sbjct: 354 IRELEKL 360


>gi|242215165|ref|XP_002473400.1| eukaryotic translation initiation factor 4A-like protein [Postia
           placenta Mad-698-R]
 gi|220727497|gb|EED81414.1| eukaryotic translation initiation factor 4A-like protein [Postia
           placenta Mad-698-R]
          Length = 501

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 119/362 (32%), Positives = 194/362 (53%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F ++ L  +++  + +AG+ KP+PIQ + IP+ L + DV   A+ GTGKTA+FV+P L
Sbjct: 43  LEFDEMFLRRELLMGIYEAGFEKPSPIQEEAIPIALTKRDVLARAKNGTGKTAAFVIPSL 102

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  + +++    L+L PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 103 QQVDITKNKIQ---ALLLVPTRELALQTSQVCKILGKHMGVQVMVTTGGTTLKDDIIRLS 159

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               VL+ TPGRILD   +    ++   + V+DEAD++L   F P ++ + S +P  RQ 
Sbjct: 160 ETVHVLVGTPGRILDLAGKNVADLSECPVFVMDEADKLLSPEFAPVMEQLLSYLPKDRQV 219

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  +++P  I +    +     ++     Y +  +K   L  L  
Sbjct: 220 MLFSATFPLIVKDFKDKHMKSPYEINLMDELTLRGVTQYY---AYVEERQKVHCLNTLF- 275

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q  R ++  +F+ G  + +V
Sbjct: 276 SKLQINQSIIFCNSTNRVELLAKKVTELGYSCFYSHAKMLQSHRNRVFHDFRNGVCRNLV 335

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  LV  ED  ++  I
Sbjct: 336 CSDLLTRGIDIQAVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINLVTYEDRFNLYKI 395

Query: 361 EK 362
           E+
Sbjct: 396 EQ 397


>gi|320547900|ref|ZP_08042183.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           equinus ATCC 9812]
 gi|320447440|gb|EFW88200.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           equinus ATCC 9812]
          Length = 447

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 125/366 (34%), Positives = 196/366 (53%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D    P +  A+ +  +  PT +Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFNDFNFKPYIREALAELKFKNPTEVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKK 118
             L++    V++   +I  P+RELA Q+    ++  +     + VA  +GG     Q +K
Sbjct: 61  EKLDENNNNVQV---VITAPSRELATQIYQATKQIAEKSETEIRVANYVGGTDKLRQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+     ++I TPGRI D    G L +      V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LKSAQPHIVIGTPGRIYDLVKSGDLEIYKAHTFVVDEADMTLDMGFLDTVDKIAGTLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  V+T  +   K A + +
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEKIKTTTVIADTIDNWLVSTKGR--DKNAQILE 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + ++ +     +IF N K+    L   L   G  V  IHG+I  R R + ++  K+ + +
Sbjct: 236 ITKAINPYL-AMIFVNTKERADELHSYLASNGLKVAKIHGDIPPRERKRTMNQIKKLSYE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G +G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLNGIAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EKL
Sbjct: 355 RELEKL 360


>gi|297809151|ref|XP_002872459.1| hypothetical protein ARALYDRAFT_911240 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297318296|gb|EFH48718.1| hypothetical protein ARALYDRAFT_911240 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 620

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 189/370 (51%), Gaps = 21/370 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGLS +V+ A+ +     PT IQ   IP V++R  V   + TG+GKT +++LP++ 
Sbjct: 113 NFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQ 172

Query: 62  ILEKGRARV------RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           ++ +  A +      R PRT++L PTREL+ QV    +    +      L+ GG     Q
Sbjct: 173 LMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQ 232

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L    D+++ TPGRIL H   G ++  +I  LV+DEAD M D GF P I+    L P
Sbjct: 233 EDSLNNAIDMVVGTPGRILQHIEEGNMVYGDITYLVLDEADTMFDRGFGPEIRKF--LAP 290

Query: 176 FTR----------QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
             +          QT+L +ATMT  +QK+ +   Q  + +  +T         H F+   
Sbjct: 291 LNQRALKTNDQGFQTVLVTATMTTAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLS 350

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
               K  ALLQ L  S       ++FCN   +   + H L +   S    HG +    R+
Sbjct: 351 GGEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHFLSENQISTVNYHGEVPADQRV 410

Query: 286 KILSNFK--EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           + L  FK  EG    +V +DLAARGLD+ DV HV  FD P  + +Y+HR GRT R G  G
Sbjct: 411 ENLKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLHRTGRTARMGAKG 469

Query: 344 KAFTLVAKED 353
           K  +LV+++D
Sbjct: 470 KVTSLVSRKD 479


>gi|254584256|ref|XP_002497696.1| ZYRO0F11440p [Zygosaccharomyces rouxii]
 gi|238940589|emb|CAR28763.1| ZYRO0F11440p [Zygosaccharomyces rouxii]
          Length = 523

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 187/360 (51%), Gaps = 7/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTA+FV+P L  
Sbjct: 32  FEDFFLKRELLMGIFEAGFEKPSPIQEESIPVALAGRDILARAKNGTGKTAAFVIPTL-- 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            EK + ++   + LI+ PTRELA Q +      GK+  ++  +  GG        +L   
Sbjct: 90  -EKVKPKINKIQALIMVPTRELALQTSQVVRTLGKHCGVSCMVTTGGTNLRDDILRLNET 148

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             VL+ TPGR+LD  +R    ++   + V+DEAD+ML   F   I+ I   +P   Q+LL
Sbjct: 149 VHVLVGTPGRVLDLASRKVADLSECSLFVMDEADKMLSRDFKTIIEQILIFLPPQHQSLL 208

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    +++     L  P  I +     T + I   +   + +  +K   L  L  S+
Sbjct: 209 FSATFPITVKEFMVKHLHKPYEINL-MEELTLKGITQYYA--FVEERQKLHCLNTLF-SK 264

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   IIFCN    V  L   +   G+S    H  + Q+ R K+   F++G ++ +V S
Sbjct: 265 LQVNQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMRQQERNKVFHEFRQGKVRTLVCS 324

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+   D  ++  IE+
Sbjct: 325 DLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQ 384


>gi|156049233|ref|XP_001590583.1| hypothetical protein SS1G_08323 [Sclerotinia sclerotiorum 1980]
 gi|160380617|sp|A7ESL8|DBP4_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp4
 gi|154692722|gb|EDN92460.1| hypothetical protein SS1G_08323 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 808

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 137/463 (29%), Positives = 241/463 (52%), Gaps = 30/463 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L LS      +  + +   T +Q K +PL L+  D+ G A+TG+GKT +F++P+L 
Sbjct: 50  NFSELPLSGPTSSGLEASHFKTLTDVQSKAVPLALKGKDILGAAKTGSGKTLAFLVPVLE 109

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L + +   +     LI+ PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L 
Sbjct: 110 NLYRQKWTELDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLIIGGRSLQEERERLG 169

Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           R  ++L+CTPGR+L H ++     ++N+++LV+DEADR++DMGF   +  I   +P  RQ
Sbjct: 170 R-MNILVCTPGRMLQHMDQTAAFDVDNLQMLVLDEADRIMDMGFQTSVDAILEHLPKQRQ 228

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI----EHCFVATYAQYSKKCALL 235
           T+LFSAT T ++  ++   L+ P+ + V+  +S+A        +C V    + +     +
Sbjct: 229 TMLFSATQTKKVSDLARLSLKEPEYVAVHEAASSATPTTLQQHYCVVPLPEKLNTLFGFI 288

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +  L+++      I+F +  K V  +  SL   + G  +  +HG   Q +R+ I S F  
Sbjct: 289 RANLKAK-----IIVFMSSGKQVRFVYESLRHLQPGIPLLHLHGRQKQTARLDITSKFSS 343

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
                + A+D+ ARGLD P V  V   D P  A+ YIHR+GRT R G+ G+A   +   +
Sbjct: 344 SKNSCIFATDVVARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYGKVGRAVLFLDPSE 403

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            + +  +++L  KKV            P++KI+I  +      N +  ++  F   +  Y
Sbjct: 404 EEGM--LKRLEHKKV------------PIQKINIRPNKTQDIKNQL--QNMCFQDPELKY 447

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPK 456
             QK+ +   +S  + K ++    ND D  G+  ++     PK
Sbjct: 448 LGQKAFVSYAKSVFLQKDKEIFNINDIDLEGYASSIGLPGAPK 490


>gi|62289105|ref|YP_220898.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 1 str.
           9-941]
 gi|82699043|ref|YP_413617.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308]
 gi|189023379|ref|YP_001934147.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|237814596|ref|ZP_04593594.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella abortus str.
           2308 A]
 gi|254696549|ref|ZP_05158377.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254731464|ref|ZP_05190042.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 4 str. 292]
 gi|260546402|ref|ZP_05822142.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260759205|ref|ZP_05871553.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260760927|ref|ZP_05873270.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|62195237|gb|AAX73537.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615144|emb|CAJ10077.1| Lipocalin-related protein and Bos/Can/Equ allergen:ATP-dependent
           helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-termin [Brucella melitensis biovar Abortus 2308]
 gi|189018951|gb|ACD71673.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|237789433|gb|EEP63643.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella abortus str.
           2308 A]
 gi|260096509|gb|EEW80385.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260669523|gb|EEX56463.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260671359|gb|EEX58180.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
          Length = 626

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 119/347 (34%), Positives = 189/347 (54%), Gaps = 10/347 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEK- 65
           ++P +  A+   GY   T +Q   +       D+   AQTG+GKT +F L M  TILE  
Sbjct: 7   IAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMANTILEDE 66

Query: 66  ---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
              G A    P  +I+ PTRELA Q     E    +    +A  +GG+    + + LERG
Sbjct: 67  LRFGDAGA--PLAMIIAPTRELALQARRELEWLYADTGARIASCVGGMDIRTERRALERG 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGR+ DH  R  L M+ +  +V+DEAD MLDMGF   ++ I    P  R+TL+
Sbjct: 125 SHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDRRTLM 184

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++++ F  N  RI V + +S    I++  +     + +  A++  LL   
Sbjct: 185 FSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPV-PPHERDHAIINTLLYYD 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +N IIFC+ ++ V ++   L  +GF+V A+ G + Q  R   L   ++G  ++ VA+
Sbjct: 244 S--QNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVAT 301

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+P++  V + D+P   +  +HR GRTGRAGR G    +V
Sbjct: 302 DVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVV 348


>gi|307168696|gb|EFN61728.1| Putative ATP-dependent RNA helicase me31b [Camponotus floridanus]
          Length = 443

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 192/361 (53%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L  +++  + + G+ KP+PIQ  +IP+ L   D+   A+ GTGKT ++ +P   
Sbjct: 55  EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDILARAKNGTGKTGAYSIP--- 111

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LE+   R  + + L++ PTRELA Q +    +  K+ ++ V +  GG        ++ +
Sbjct: 112 VLEQVDPRREVIQALVIVPTRELALQTSQICIELAKHMDIKVMVTTGGTNLRDDIMRIYQ 171

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGRILD  ++    M + +ILV+DEAD++L   F   + ++ S +P  RQ L
Sbjct: 172 KVQVIIATPGRILDLMDKNVANMEHCKILVLDEADKLLSQDFKGMLDHVISRLPHERQIL 231

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    +++  E  L++P  I +    +     ++     + Q  +K   L  L  S
Sbjct: 232 LYSATFPLTVKQFMEKHLRDPYEINLMEELTLKGVTQY---YAFVQERQKVHCLNTLF-S 287

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   +   G+    IH  + Q  R ++  +F+ G  + +V+
Sbjct: 288 KLQITQSIIFCNSTQRVELLAKKITDLGYCCYYIHAKMAQAHRNRVFHDFRAGLCRNLVS 347

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  IE
Sbjct: 348 SDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRFNLHRIE 407

Query: 362 K 362
           +
Sbjct: 408 Q 408


>gi|67516615|ref|XP_658193.1| hypothetical protein AN0589.2 [Aspergillus nidulans FGSC A4]
 gi|74627495|sp|Q5BFU1|DBP4_EMENI RecName: Full=ATP-dependent RNA helicase dbp4
 gi|40747532|gb|EAA66688.1| hypothetical protein AN0589.2 [Aspergillus nidulans FGSC A4]
 gi|259489143|tpe|CBF89171.1| TPA: ATP-dependent RNA helicase dbp4 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5BFU1] [Aspergillus
           nidulans FGSC A4]
          Length = 812

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/372 (33%), Positives = 204/372 (54%), Gaps = 12/372 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F+DL +S   +  +  + +   T IQ + I   L+  DV G A+TG+GKT +F++P+L  
Sbjct: 50  FSDLPISEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPILEN 109

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  K  +       LI+ PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L R
Sbjct: 110 LYRKQWSDHDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLKEEQERLGR 169

Query: 122 GADVLICTPGRILDHFNRGKLLMN-NIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++       N+++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 170 -MNILVCTPGRMLQHLDQTAFFETYNLQMLVLDEADRIMDMGFQKTVDAIIGHLPPERQT 228

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT T ++  ++   LQ+P+ + V+  +S+A    ++  +V T     +K   L   
Sbjct: 229 LLFSATQTKKVSDLARLSLQDPEYVAVHEAASSATPSKLQQHYVVT--PLPQKLDTLWSF 286

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++S    K  I+F +  K V  +  S    + G  +  +HG   Q  R+ I + F +   
Sbjct: 287 IRSNLKSKT-IVFMSSGKQVRFVYESFRHMQPGIPLLHLHGRQKQGGRLDITTRFSQAQH 345

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++ ++D+AARGLD P V  V   D P  A+ YIHR+GRT R  R G+A   +   + K 
Sbjct: 346 AVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEKG 405

Query: 357 IDAIEKLIEKKV 368
           +  + +L +K+V
Sbjct: 406 M--LRRLEQKRV 415


>gi|298712936|emb|CBJ26838.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 694

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 125/365 (34%), Positives = 195/365 (53%), Gaps = 27/365 (7%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARV---RMPRTLILEPT 81
           PIQ +T   + +  D+ G A+TG GKT +F +P++  +L  G   +   R PR L++ PT
Sbjct: 172 PIQAQTFEHIRRGKDLIGRARTGMGKTLAFAVPVIEKLLMAGAGSLKPGRKPRVLVMAPT 231

Query: 82  RELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGK 141
           RELA QVA +FE    +   T   + GG P+  Q   L  G DV++ TPGR+LDH  RG 
Sbjct: 232 RELAKQVAADFELTAPSLKTTC--IYGGAPYRPQEDALRWGVDVVVGTPGRLLDHVGRGT 289

Query: 142 LLMNNIEILVIDEADRMLDMGFIPYIQNITSLV----PFTRQTLLFSATMTDELQKVSEN 197
           L +++ E +++DEAD+MLDMGF   ++ +           RQ LLFSATM   + KV + 
Sbjct: 290 LQLSDAEFIILDEADQMLDMGFKEEMEKVFEACGEEGEQGRQMLLFSATMPPWVDKVVKE 349

Query: 198 FLQNPKRIEVN----TPSSTAETIEHCFVATYAQYSKKCALLQQLLQ--SQDTMKNGIIF 251
           +++   R+ ++         ++ +EH  +     ++ + + +  ++        K  I+F
Sbjct: 350 YMKE-DRVFIDLVKEGTVKASKDVEH--IGIPCHWTSRSSTINDIVSVYGAGGNKRTIVF 406

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           C  K++   LC    K  +   A+HG+I Q +R   L+ FK+G+ +++VA+D+AARGLD+
Sbjct: 407 CTTKRDCNELCMD-PKMTYDCQALHGDITQANRESTLAGFKKGSFKVLVATDVAARGLDM 465

Query: 312 PDVGHVFNFDVPNR------AENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
             V  V N + P         E+Y+HR GRTGRAGR G   TL        +  IE+ I 
Sbjct: 466 I-VDLVLNAEPPTHQSGRVDTESYVHRSGRTGRAGRKGMCITLYTPRQRGGLGEIERHIG 524

Query: 366 KKVDW 370
               W
Sbjct: 525 NDFAW 529


>gi|169843536|ref|XP_001828497.1| ATP-dependent RNA helicase DBP3 [Coprinopsis cinerea okayama7#130]
 gi|116510435|gb|EAU93330.1| ATP-dependent RNA helicase DBP3 [Coprinopsis cinerea okayama7#130]
          Length = 671

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/349 (35%), Positives = 189/349 (54%), Gaps = 36/349 (10%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ +P+PIQ  T P  L+  DV GIA+TG+GKT +F +P L  L    +   +  TLI+ 
Sbjct: 246 GFKEPSPIQACTWPPALEGKDVVGIAETGSGKTLAFGIPALNRLISSPSGSGI-STLIVA 304

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD--------------- 124
           PTRELA Q  DN      ++ +    + GG+  ++Q K L++                  
Sbjct: 305 PTRELAIQTHDNLSALAASFGIASVAIFGGVSKDSQIKMLKKSISSSKSKKGKGGEGGDG 364

Query: 125 ----VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTR 178
               +++ TPGRILD    G L ++ ++ LV+DEADRMLD GF   I+ I +       R
Sbjct: 365 LVTRIVVGTPGRILDLMQDGVLDLSGVDYLVLDEADRMLDKGFENDIRRIIAATKKKEER 424

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC------ 232
           QT++FSAT  + +++++  F ++P R+ V +   TA +     V  +     K       
Sbjct: 425 QTMMFSATWPEAVRRLASTFQRDPVRVTVGSDDLTANSRVEQVVEVFDDVRSKDQRLNNH 484

Query: 233 --ALLQQLLQSQDTMKNGI------IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
             ALL +  +S  +  + +      +F   KK    +   L++QG++V A+HG++ Q +R
Sbjct: 485 LRALLPKNKKSSASANSPLEISRILVFALYKKEASRVEEMLKRQGYTVGALHGDMSQSAR 544

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
           M+ L NFK G  QL+VA+D+AARGLDIP+VG V N+  P   E+YIHRI
Sbjct: 545 MEALDNFKTGKTQLLVATDVAARGLDIPNVGAVINYTFPLTIEDYIHRI 593


>gi|224085245|ref|XP_002307523.1| predicted protein [Populus trichocarpa]
 gi|222856972|gb|EEE94519.1| predicted protein [Populus trichocarpa]
          Length = 573

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 138/405 (34%), Positives = 203/405 (50%), Gaps = 26/405 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS +V+ AV + G   PT IQ   IP +L    V   + TG+GKT +++LP++ +
Sbjct: 118 FEELGLSEEVMGAVKEMGIEVPTEIQCIGIPAILDSRTVVLGSHTGSGKTLAYMLPLVQL 177

Query: 63  LEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           L +  A      + R PR ++L PTREL+ QV    +  G +      ++ GG     Q 
Sbjct: 178 LRRDEALLGRLMKPRRPRAVVLCPTRELSEQVFRVAKSIGHHARFRSTMVSGGGRMRPQE 237

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L    D+++ TPGR+L H   G ++  +I+ LV+DEAD M D GF P I     L P 
Sbjct: 238 DSLNNPIDMVVGTPGRVLQHIQDGNMVYGDIKYLVLDEADTMFDRGFGPDIHKF--LGPL 295

Query: 177 TR----------QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                       QT+L +ATMT  +QK+ +   Q  + +  +T      +  H F+    
Sbjct: 296 KNRTSKSDGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLSG 355

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
             +K  ALLQ L  S       ++FCN   +     H L +   S    HG +    R++
Sbjct: 356 SENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAADHFLAENQISTVNYHGEVPAEQRVE 415

Query: 287 ILSNFK--EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            L+ FK  +G    +V +DLAARGLD+ DV HV  FD P  + +Y+HR GRT R G  GK
Sbjct: 416 NLNKFKSDDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 474

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
             +LVA++D +    IE+ + K     N  L SL     + DIA+
Sbjct: 475 VTSLVARKDQQLAARIEEAMRK-----NESLESLTVDNVRRDIAR 514


>gi|170780855|ref|YP_001709187.1| putative DEAD-box RNA helicase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155423|emb|CAQ00530.1| putative DEAD-box RNA helicase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 513

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 192/374 (51%), Gaps = 18/374 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+   +V A+   G   P PIQ+ T+P  L   DV G  +TG+GKT +F +PM+  
Sbjct: 6   FGALGVPAPLVSALTANGITTPFPIQVDTLPDTLNGRDVLGRGKTGSGKTLAFAIPMIAR 65

Query: 63  LEKGRARVRMPRTL----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L  G A  R         IL PTRELA Q+        + YNLT   + GG+  + Q   
Sbjct: 66  LGGGLAGGRRRPGRPLGLILAPTRELATQITAAMAPLAEAYNLTTTTIFGGVSQQRQVAA 125

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G DV++  PGR+ D   +G + ++ +EI V+DEAD M D+GF+P +  I    P T 
Sbjct: 126 LKAGVDVVVACPGRLEDLMKQGFVNLDAVEITVLDEADHMADLGFLPVVTRILDKTPNTG 185

Query: 179 QTLLFSATMTDELQKVSENFLQNP---KRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
           Q +LFSAT+ + + K+   +L +       E N+P   A    H F A+  +  +   LL
Sbjct: 186 QRMLFSATLDNGVDKLVRRYLHDQVLHSVDEANSP--VAAMTHHVFEASDVEAKR---LL 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            Q L      +  I+F   K +   L   L   G     +HGN+ Q +R + L+ F  G 
Sbjct: 241 VQKLAGGSGRR--ILFMRTKHHAKKLAKQLTDAGIPSVDLHGNLSQVARDRNLAAFSAGD 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARG+ + D+  V + D P   + Y+HR GRT RAG  G   T++     K
Sbjct: 299 VKVLVATDVAARGVHVDDIELVIHVDPPAEHKAYLHRSGRTARAGSAGDVVTIMLPAQRK 358

Query: 356 HIDAIEKLIEKKVD 369
            +    +L+ +K D
Sbjct: 359 DV----QLLMRKAD 368


>gi|307198143|gb|EFN79171.1| Probable ATP-dependent RNA helicase DDX10 [Harpegnathos saltator]
          Length = 738

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 129/372 (34%), Positives = 210/372 (56%), Gaps = 17/372 (4%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE-KGRARVRMPRTLILEPTRE 83
           T IQ ++I L LQ +D+ G A+TG+GKT +F++P+L IL  K   ++     L++ PTRE
Sbjct: 2   TDIQRQSIGLALQGNDILGAAKTGSGKTLAFLVPILEILYCKQWTKLDGLGVLVITPTRE 61

Query: 84  LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143
           LA Q+ D   K G+ ++ +  L+IGG   + + K++++  +V+ICTPGR+L H +  +L 
Sbjct: 62  LAYQIYDTLRKVGQYHDFSTGLIIGGKDLKFEAKRMDQ-YNVIICTPGRLLQHMDENQLF 120

Query: 144 -MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNP 202
              N++ILV+DEADR LDMGF   +  I   +P  RQTLLFSAT T  ++ ++   L++P
Sbjct: 121 NCVNMQILVLDEADRCLDMGFEKTMNAIIENLPPKRQTLLFSATQTKSVKDLARLSLRDP 180

Query: 203 KRIEVNTPSS--TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF--CNQKKNV 258
             I  +  S+  T E++   ++    +   K A+L   +++    K  + F  C Q K V
Sbjct: 181 LYISAHEYSAHVTPESLHQSYIVCALE--DKLAMLWSFIRNHLKQKIIVFFSSCKQVKYV 238

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
                 L + G S+  ++  + Q  RM I   F++    ++ A+D+AARGLD P V  V 
Sbjct: 239 YEAFCRL-RPGISLLGLYSTLHQLRRMSIYETFRKKQHAVLFATDIAARGLDFPAVNWVI 297

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKA-FTLVAKEDIKHIDAIEKLIEKK--VDWLNGDL 375
             D P     YIHR+GRT R    G++   L+  E++     IEKL ++K  ++ +  + 
Sbjct: 298 QMDCPEDVNAYIHRVGRTARFKSGGESLLVLLPSEEV----MIEKLRQRKIPINMIEINP 353

Query: 376 SSLNPPLEKIDI 387
           + L+ P  K++I
Sbjct: 354 NKLHSPQRKLEI 365


>gi|306830625|ref|ZP_07463790.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304427133|gb|EFM30240.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 447

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 124/366 (33%), Positives = 196/366 (53%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D    P +  A+ +  +  PT +Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFNDFNFKPYIREALAELKFTNPTEVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKK 118
             L++    V++   +I  P+RELA Q+    ++  +     + VA  +GG     Q +K
Sbjct: 61  EKLDENSNNVQV---VITAPSRELATQIYQATKQIAEKSETEIRVANYVGGTDKLRQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+     ++I TPGRI D    G L +      V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LKSSQPHIVIGTPGRIYDLVKSGDLEIYKAHTFVVDEADMTLDMGFLDTVDKIAGTLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  V+T  +   K A + +
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEKIKTTTVIADTIDNWLVSTKGR--DKNAQILE 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + ++ +     +IF N K+    L   L   G  V  IHG+I  R R + ++  K+ + +
Sbjct: 236 ITKALNPYL-AMIFVNTKERADELHSYLVSNGLKVAKIHGDIPPRERKRTMNQIKKLSYE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G +G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLNGIAITLYKPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 RELEKM 360


>gi|57085923|ref|XP_536551.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX6
           (DEAD-box protein 6) (ATP-dependent RNA helicase p54)
           (Oncogene RCK) isoform 1 [Canis familiaris]
 gi|73954674|ref|XP_849975.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX6
           (DEAD-box protein 6) (ATP-dependent RNA helicase p54)
           (Oncogene RCK) isoform 2 [Canis familiaris]
 gi|126326574|ref|XP_001370626.1| PREDICTED: similar to DDX6 protein [Monodelphis domestica]
 gi|149716584|ref|XP_001503067.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Equus
           caballus]
 gi|296216344|ref|XP_002754541.1| PREDICTED: probable ATP-dependent RNA helicase DDX6-like
           [Callithrix jacchus]
 gi|301791568|ref|XP_002930752.1| PREDICTED: probable ATP-dependent RNA helicase DDX6-like
           [Ailuropoda melanoleuca]
 gi|281351767|gb|EFB27351.1| hypothetical protein PANDA_021316 [Ailuropoda melanoleuca]
          Length = 483

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 195/362 (53%), Gaps = 8/362 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 97  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L+  +  ++    +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 157 RLDLKKDNIQ---AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 214 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK   + LQ P  I +    +     ++     Y    +K   L  L  
Sbjct: 274 LLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQY---YAYVTERQKVHCLNTLF- 329

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 330 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 389

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 390 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449

Query: 361 EK 362
           E+
Sbjct: 450 EE 451


>gi|325977606|ref|YP_004287322.1| ATP-dependent RNA helicase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177534|emb|CBZ47578.1| ATP-dependent RNA helicase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 447

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/366 (34%), Positives = 195/366 (53%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D    P +  A+ +  +  PT +Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFNDFNFKPYIREALAELKFTNPTEVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKK 118
             L++    V++   +I  P+RELA Q+    ++  +     + VA  +GG     Q +K
Sbjct: 61  EKLDENSNNVQV---VITAPSRELATQIYQATKQIAEKSETEIRVANYVGGTDKLRQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+     ++I TPGRI D    G L +      V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LKSSQPHIVIGTPGRIYDLVKSGDLEIYKAHTFVVDEADMTLDMGFLDTVDKIAGTLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  V+T  +   K A + +
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEKIKTTTVIADTIDNWLVSTKGR--DKNAQILE 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + ++ +     +IF N K+    L   L   G  V  IHG I  R R + ++  K+ + +
Sbjct: 236 ITKALNPYL-AMIFVNTKERADELHSYLVSNGLKVAKIHGGIPPRERKRTMNQIKKLSYE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G +G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLNGIAITLYKPSDDSDI 354

Query: 358 DAIEKL 363
             +EKL
Sbjct: 355 RELEKL 360


>gi|291412972|ref|XP_002722747.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Oryctolagus
           cuniculus]
          Length = 483

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 195/362 (53%), Gaps = 8/362 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 97  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L+  +  ++    +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 157 RLDLKKDNIQ---AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 214 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK   + LQ P  I +    +     ++     Y    +K   L  L  
Sbjct: 274 LLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQY---YAYVTERQKVHCLNTLF- 329

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 330 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 389

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 390 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449

Query: 361 EK 362
           E+
Sbjct: 450 EE 451


>gi|149428666|ref|XP_001516184.1| PREDICTED: similar to DDX6 protein [Ornithorhynchus anatinus]
          Length = 444

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 195/362 (53%), Gaps = 8/362 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 58  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 117

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L+  +  ++    +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 118 RLDLKKDNIQ---AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 174

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 175 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 234

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK   + LQ P  I +    +     ++     Y    +K   L  L  
Sbjct: 235 LLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQY---YAYVTERQKVHCLNTLF- 290

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 291 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 350

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 351 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 410

Query: 361 EK 362
           E+
Sbjct: 411 EE 412


>gi|307702030|ref|ZP_07639038.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
           mitis NCTC 12261]
 gi|307616675|gb|EFN95864.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
           mitis NCTC 12261]
          Length = 447

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/367 (34%), Positives = 192/367 (52%), Gaps = 11/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKKYISEALEELKFTTPTEVQDKLIPIVLTGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   + ++ V ++  +GG     Q  K
Sbjct: 61  QQLDEADDSVQ---AVITAPSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKARQIDK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQ 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +  + +   L 
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQLT 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           QL+Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K    
Sbjct: 238 QLMQPYLAM----IFVNTKMRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDF 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   
Sbjct: 294 EYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSD 353

Query: 357 IDAIEKL 363
           I  +EKL
Sbjct: 354 IRELEKL 360


>gi|150863984|ref|XP_001382645.2| pre-mRNA processing RNA-helicase [Scheffersomyces stipitis CBS
           6054]
 gi|158514823|sp|A3LQ55|PRP5_PICST RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|149385240|gb|ABN64616.2| pre-mRNA processing RNA-helicase [Scheffersomyces stipitis CBS
           6054]
          Length = 875

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/377 (33%), Positives = 195/377 (51%), Gaps = 24/377 (6%)

Query: 1   MDFADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           + ++ LGL    +  + D   Y  PT IQ + +P ++   D+ G+A+TG+GKT SFVLPM
Sbjct: 272 LKWSHLGLPASYMNIIEDKLEYKAPTSIQSQALPAIMSGRDIIGVAKTGSGKTLSFVLPM 331

Query: 60  LT------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
           L        L+ G      P  LIL PTRELA Q+      + K   +T     GG P E
Sbjct: 332 LRHIQDQPDLKDGEG----PIGLILSPTRELAVQIHKEITNFTKRLGMTACCCYGGSPIE 387

Query: 114 AQNKKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNI 170
           +Q  +L++GA +L+ TPGRI++    N G++  +  +  +V+DEADRM D+GF P +  I
Sbjct: 388 SQIAELKKGAQILVGTPGRIIELLAANSGRITNLRRVTYVVLDEADRMFDLGFEPQVTKI 447

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV------AT 224
           +S +    QT+LFSAT   +++ +++  L NP  I V   S  A  I           ++
Sbjct: 448 SSQIRPESQTVLFSATFPRKIELLAKRLLYNPLEIIVGGISVVASEITQKVELFEKGESS 507

Query: 225 YAQYSKKCALLQQL--LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             +  K   LL  L     +      +IF  ++    +L   L         IHG  DQ 
Sbjct: 508 QLEDEKFDRLLNILNVFSIESKHSKVLIFVEKQSAADDLLVKLLGSNHPCLTIHGGKDQI 567

Query: 283 SRMKILSNF--KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
            R   +  F  K+  + +++A+ +AARGLD+  +  V N+D PN  E+Y+HR+GRTGRAG
Sbjct: 568 DRKYAIKEFSSKDSGVDILIATSIAARGLDVKGLDLVINYDPPNHMEDYVHRVGRTGRAG 627

Query: 341 RHGKAFTLVAKEDIKHI 357
             G A T V+ +  + +
Sbjct: 628 MKGTAITFVSSDQERSV 644


>gi|58259291|ref|XP_567058.1| hypothetical protein CNA07420 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134107439|ref|XP_777604.1| hypothetical protein CNBA7250 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687348|sp|Q5KN79|DBP4_CRYNE RecName: Full=ATP-dependent RNA helicase DBP4
 gi|50260298|gb|EAL22957.1| hypothetical protein CNBA7250 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223195|gb|AAW41239.1| hypothetical protein CNA07420 [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 859

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 135/403 (33%), Positives = 205/403 (50%), Gaps = 34/403 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F++L +S K    +  + ++ PTPIQ   IP  LQ  D+ G A+TG+GKT +F++P+L  
Sbjct: 62  FSELPMSSKTQKGLKSSHFLNPTPIQSLAIPPALQARDILGSAKTGSGKTLAFLIPLLER 121

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LEK      +   +++ PTRELA Q        GK +N +  L+IGG P + + ++L 
Sbjct: 122 LYLEKWGPMDGL-GAVVISPTRELAVQTFMQLRDIGKYHNFSAGLVIGGKPLKEEQERLG 180

Query: 121 RGADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITS-LVPF-- 176
           R  ++LI TPGR+L H +       + +++LV+DEADR+LD+GF+P ++ I S   P   
Sbjct: 181 R-MNILIATPGRLLQHLDSTVGFDSSAVKVLVLDEADRLLDLGFLPALKAIVSHFSPVQT 239

Query: 177 ------TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY-- 228
                 +RQTLLFSAT + +L  +++  L  P  I  N P       E    A   QY  
Sbjct: 240 APGSRPSRQTLLFSATQSKDLAALAKLSLYEPLYISCNKPGE-----EGVMPANLEQYYA 294

Query: 229 ----SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK-----QGFSVCAIHGNI 279
                +K   L   ++S   MK GI+F    K    +    E       G  +  +HG  
Sbjct: 295 VVPLERKLDALWGFVKSHLKMK-GIVFVTSGKQARRVRFIFETFRRLHPGLPLMHLHGKQ 353

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q +R+ I   F      L++ +D+AARGLD P V  V   D P+  + YIHR+GRT R 
Sbjct: 354 KQPTRLDIFQRFSSSKSALLICTDVAARGLDFPAVDWVIQLDCPDDVDTYIHRVGRTARY 413

Query: 340 GRHGKAFTLV--AKEDIKHIDAIEKLIE-KKVDWLNGDLSSLN 379
              G A T++  ++E+       EK IE K++    G + +L 
Sbjct: 414 QSAGTALTILCPSEEEGMKTRWGEKAIEVKRIKIKEGKMGNLK 456


>gi|195028030|ref|XP_001986885.1| GH21617 [Drosophila grimshawi]
 gi|193902885|gb|EDW01752.1| GH21617 [Drosophila grimshawi]
          Length = 524

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 145/447 (32%), Positives = 228/447 (51%), Gaps = 26/447 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +   +   G    TPIQ   IP +L   D  G A+TG+GKT +F LP   I
Sbjct: 9   FLQLGLRPWLAKQLTKLGLKGATPIQENCIPAILSGKDCIGAAKTGSGKTFAFALP---I 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE+          L+L PT ELA Q+++ F   G+   + V ++ GG     +++KL + 
Sbjct: 66  LERLSEEPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMIESQKLMQR 125

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++  PGR+ DH         +N++ LV+DEADRML+  F   +  I   +P +RQ L
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKSRQNL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQLL 239
            FSATM D   K S  F      +E +  S  +T +T++  ++   A Y +   L++ L 
Sbjct: 186 FFSATMKD-FMKESSIFPIAKDCLEWSQDSDVATVDTLDQRYLLC-ADYDRDMVLVESLR 243

Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + ++  +N   +IF N KK    L  +L         +HG + Q+ R+  LS FK   I+
Sbjct: 244 KYREENENSNVMIFTNTKKYCQLLSMTLANMEIENVCLHGFMRQKERVAALSRFKSNHIR 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKH 356
            ++A+D+AARGLDIP V  V N  +P   + YIHR+GRT RAGR G A ++     D++ 
Sbjct: 304 TLIATDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGLAISIFRFPRDLEL 363

Query: 357 IDAIE-----KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           + AIE     KL E  +D            +E+I   Q N +R+ + +   +  FD R +
Sbjct: 364 LGAIEAEINTKLTEHPID---------QRMVERI-FMQVNVSRRESEMQLDNNDFDERAQ 413

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQEN 438
           NY  +   +  K+ +++  L +  Q++
Sbjct: 414 NYRRKTWIMEGKDPDQMEALYRKKQKD 440


>gi|323490080|ref|ZP_08095301.1| ATP-dependent RNA helicase yqfR [Planococcus donghaensis MPA1U2]
 gi|323396376|gb|EGA89201.1| ATP-dependent RNA helicase yqfR [Planococcus donghaensis MPA1U2]
          Length = 431

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 197/361 (54%), Gaps = 6/361 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +    P ++ AV   G+ +PT IQ + +P +L+     G + TGTGKT SF++P++  
Sbjct: 4   FNEYPFKPFLLEAVEKLGFTEPTQIQKEMMPHILKGTSAIGQSHTGTGKTHSFIIPIVER 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  +  V+    +I  PTREL  Q+ +  +K      + V   IGG   +    KL+  
Sbjct: 64  IDVSKQEVQ---AVISAPTRELGTQIFNELQKLVVGSGIEVKSFIGGTDKQRSINKLKTQ 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ D      LL++  +IL++DEAD   D+GFI  I  +   +    +  +
Sbjct: 121 PHIVVGTPGRLRDLVKENALLVHTGKILIVDEADLAFDLGFIEEIDQVAGKMKDDLEMYV 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++L+   + ++++P  +++     TA+ ++   V   ++  KK   LQ +++  
Sbjct: 181 FSATIPEKLKPFLKKYMESPIHVKIGDKRPTADGLDFYLVPVRSK--KKMDRLQDVMKVI 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     IIF N + N   +   L K+G  V  +HG++  R R+K++   ++   Q +VA+
Sbjct: 239 NPYL-AIIFVNTRTNADYVADQLAKEGIRVGRVHGDLAPRERVKMMRQIRDLEYQYIVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARG+DI  V HV N+++P   E +IHR+GRT RAG  G A TL   E+   I  IEK
Sbjct: 298 DLAARGIDIQGVSHVINYELPEDLEFFIHRVGRTARAGMKGLAITLFKPEEDDAIVRIEK 357

Query: 363 L 363
           +
Sbjct: 358 M 358


>gi|50289935|ref|XP_447399.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661253|sp|Q6FQU5|DHH1_CANGA RecName: Full=ATP-dependent RNA helicase DHH1
 gi|49526709|emb|CAG60336.1| unnamed protein product [Candida glabrata]
          Length = 507

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/360 (33%), Positives = 188/360 (52%), Gaps = 7/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++  + +AG+ KP+PIQ + IP+ +   D+   A+ GTGKTA+FV+P L  
Sbjct: 33  FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL-- 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            EK + ++   + LI+ PTRELA Q +      G++  ++  +  GG        +L   
Sbjct: 91  -EKIKPKLNKIQALIMVPTRELALQTSQVIRTLGRHCGVSCMVTTGGTNLRDDILRLNET 149

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             VL+ TPGR+LD  +R    ++   + V+DEAD+ML   F   I+ + + +P   Q+LL
Sbjct: 150 VHVLVGTPGRVLDLASRKVADLSECSLFVMDEADKMLSRDFKTIIEQVLTFLPKAHQSLL 209

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    +++     L  P  I +     T + I   +   + +  +K   L  L  S+
Sbjct: 210 FSATFPLTVKEFMVKHLHKPYEINL-MEELTLKGITQYYA--FVEERQKLHCLNTLF-SK 265

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   IIFCN    V  L   +   G+S    H  + Q+ R K+  +F++G ++ +V S
Sbjct: 266 LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQDRNKVFHDFRQGKVRTLVCS 325

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+   D  ++  IE+
Sbjct: 326 DLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQ 385


>gi|226532852|ref|NP_001150170.1| ATP-dependent RNA helicase dhh1 [Zea mays]
 gi|195637296|gb|ACG38116.1| ATP-dependent RNA helicase dhh1 [Zea mays]
          Length = 503

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 118/361 (32%), Positives = 196/361 (54%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 130 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 189

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     +++   +IL PTRELA Q +   ++ GK  N+ V +  GG   +    +L +
Sbjct: 190 KIDPENNAIQV---VILVPTRELALQTSQVCKELGKYLNIEVMVSTGGTSLKDDIMRLYQ 246

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P ++ +   +P +RQ L
Sbjct: 247 PVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLLAPEFQPSVEALIHFLPPSRQLL 306

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +++  E +L  P  I +     T + I   +   + +  +K   L  L  S
Sbjct: 307 MFSATFPVTVKEFKEKYLPRPYVINL-MDELTLKGITQYY--AFVEERQKVHCLNTLF-S 362

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 363 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 422

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 423 TDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRYGHLGLAVNLITYEDRFNLYRIE 482

Query: 362 K 362
           +
Sbjct: 483 Q 483


>gi|326933365|ref|XP_003212776.1| PREDICTED: probable ATP-dependent RNA helicase DDX6-like [Meleagris
           gallopavo]
 gi|82197804|sp|Q5ZKB9|DDX6_CHICK RecName: Full=Probable ATP-dependent RNA helicase DDX6; AltName:
           Full=DEAD box protein 6
 gi|53131507|emb|CAG31824.1| hypothetical protein RCJMB04_11n24 [Gallus gallus]
          Length = 483

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 194/362 (53%), Gaps = 8/362 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 97  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L+  +  ++    +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 157 RLDLKKDNIQ---AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   + +++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 214 DTVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK   + LQ P  I +    +     ++     Y    +K   L  L  
Sbjct: 274 LLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQY---YAYVTERQKVHCLNTLF- 329

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 330 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 389

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 390 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449

Query: 361 EK 362
           E+
Sbjct: 450 EE 451


>gi|50547377|ref|XP_501158.1| YALI0B20922p [Yarrowia lipolytica]
 gi|74660087|sp|Q6CDV4|IF4A_YARLI RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|49647024|emb|CAG83411.1| YALI0B20922p [Yarrowia lipolytica]
          Length = 395

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 211/376 (56%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL  +++  +   G+  P+ IQ + I  V++ +DV   AQ+GTGKTA+F +  L  
Sbjct: 24  FDDLGLKDELLRGIYGYGFENPSSIQQRAILPVIKGNDVLAQAQSGTGKTATFSISALQN 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +++   +++ P+ LI+ PTRELA Q+      +G+   +     IGG       + ++ G
Sbjct: 84  IDE---KIKKPQALIIAPTRELAHQIQKVVLAFGEYMKIECHACIGGTSVAEDIRVIQEG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGRI D   R  L  + I++ ++DEAD ML   F   I +I + +P T QT+L
Sbjct: 141 VHVIVGTPGRIHDMIERRILKTDLIKMFILDEADEMLSREFKDPIYDIFTTLPETTQTVL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  E+  ++  F+++P RI V     T E I+  ++    Q S K  +L  L ++ 
Sbjct: 201 LSATMPAEVLDITGKFMRDPVRILVKKDELTLEGIKQFYIDV-EQESYKFEVLCDLYETI 259

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           + +   +IFCN ++ V  L  +L +  F+V ++HG  +Q  R  I+  F+ G+ ++++ +
Sbjct: 260 N-VSQAVIFCNTRRKVDYLTQALTEADFTVSSMHGETEQSQRDVIMKAFRTGSSRILITT 318

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V NFD+P+  ENYIHRIGR GR GR G A   V  ED   +  +E+
Sbjct: 319 DLLARGIDVQQVSLVINFDLPSNRENYIHRIGRGGRFGRKGVAINFVTSEDHGMLKELER 378

Query: 363 LIEKKVDWLNGDLSSL 378
               ++  +  +++ L
Sbjct: 379 FYSTEIVEMPTNIADL 394


>gi|330951415|gb|EGH51675.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae Cit 7]
          Length = 385

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 112/306 (36%), Positives = 180/306 (58%), Gaps = 5/306 (1%)

Query: 75  TLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
            L++ PTRELA QVA    +  ++  N+ V  L GG+ F  Q   LE GA +++ TPGRI
Sbjct: 1   ALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPGRI 60

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193
             H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTLLFSAT    +++
Sbjct: 61  QQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTLLFSATYPVGIKQ 120

Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
           +S  F+++P+ ++V    + ++ IE  F     +   + A+++ L   + T  + + FC 
Sbjct: 121 LSSKFMRDPQTVKVEALHADSQ-IEQIFYEISPEQRLE-AVVKVLGHFRPT--SCVAFCF 176

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA+D+AARGLDI  
Sbjct: 177 TKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDIDA 236

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
           +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE+L +  ++W   
Sbjct: 237 LDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQQY 296

Query: 374 DLSSLN 379
           D  S+ 
Sbjct: 297 DRLSIK 302


>gi|121705654|ref|XP_001271090.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
 gi|134034080|sp|A1CKJ0|DBP8_ASPCL RecName: Full=ATP-dependent RNA helicase dbp8
 gi|119399236|gb|EAW09664.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
          Length = 523

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/383 (32%), Positives = 202/383 (52%), Gaps = 18/383 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L ++P +V ++      KPT IQ   IP +L   D  G ++TG+GKT +F +PML  
Sbjct: 95  FSALNVAPWLVGSLTTLAVRKPTAIQKACIPEILNGKDCIGGSRTGSGKTIAFSVPMLQK 154

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             +    +     LIL PTRELA Q+ +  +      ++   L+ GG    +Q   L   
Sbjct: 155 WAEDPLGIF---GLILTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRSQALALAGR 211

Query: 123 ADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSLVP 175
             V++ TPGR+ DH           +  + ++V+DEADR+L  G    +P ++   S +P
Sbjct: 212 PHVVVATPGRLADHIKSSGEDTVCGLKRVRMVVLDEADRLLSSGPGSMLPDVETCLSALP 271

Query: 176 FT--RQTLLFSATMTDELQKVSE--NFLQNPKRIEVNTPSSTAETIEHCFVATYAQY--S 229
            +  RQTLLF+AT+T E++ +         P        S +  T+      TY +   +
Sbjct: 272 PSSERQTLLFTATVTPEVRALKNMPRAANKPPVFVTEISSESQGTVPPTLKQTYLKVPLT 331

Query: 230 KKCALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            + A L  LL ++ ++ K  IIFCN  K    L   L +    V ++H  + Q  R   L
Sbjct: 332 HREAFLHVLLSTEGNSTKPAIIFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSERNANL 391

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           + F+    +++VA+D+A+RGLDIP V  V N+DVP   ++Y+HR+GRT RAGR G++ TL
Sbjct: 392 ARFRASAARILVATDVASRGLDIPSVSLVVNYDVPRNPDDYVHRVGRTARAGRSGESVTL 451

Query: 349 VAKEDIKHIDAIEKLIEKKV-DW 370
           V + D++ + AIE  + +++ +W
Sbjct: 452 VGQRDVQLVLAIEARVGRQMEEW 474


>gi|291618455|ref|YP_003521197.1| SrmB [Pantoea ananatis LMG 20103]
 gi|291153485|gb|ADD78069.1| SrmB [Pantoea ananatis LMG 20103]
          Length = 442

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 119/341 (34%), Positives = 173/341 (50%), Gaps = 4/341 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
           A+ + GY +PT IQ   IP   +          G GK         +     RAR    R
Sbjct: 18  ALQEKGYTRPTAIQAAAIPPRWRAATFWVRHLPGPGKPPHIYYRCCSTCSIFRARSLARR 77

Query: 75  T-LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
             LIL PTRELA QVAD   +  K+ +L +A + GG+ F    +      DV++ T GR+
Sbjct: 78  VFLILTPTRELAMQVADQARELAKHTHLDIATITGGVAFMNHAEVFSENQDVVVATTGRL 137

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE-LQ 192
           L +          +E L++DEADRMLDMGF   I+ I     + +QT+LFSAT+  E ++
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQTMLFSATLEGEHIK 197

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
             +E  L  P  +E +      + I+  +         K  LL  LL+ Q  +   I+F 
Sbjct: 198 DFAERLLNEPVELEADPSRRERKKIQQWY-HRADDLEHKTKLLVHLLK-QPEVTRSIVFV 255

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
            +++ +  L   L   G     + G + Q  R + +    EG + ++VA+D+AARG+D+ 
Sbjct: 256 RKRERLHELVSWLHDAGIRTSYLEGEMVQAKRNEAIKRLVEGRVNVLVATDIAARGIDVD 315

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           DV HV NFD+P  A+ Y+HRIGRTGRAGR G A +LV   D
Sbjct: 316 DVSHVINFDMPRTADTYLHRIGRTGRAGRKGIAISLVEAHD 356


>gi|312218365|emb|CBX98311.1| similar to ATP-dependent RNA helicase dhh1 [Leptosphaeria maculans]
          Length = 511

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 119/362 (32%), Positives = 191/362 (52%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P  
Sbjct: 50  LEFEDFFIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIP-- 107

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE+   ++   + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 108 -TLERVNPKISKTQALILVPTRELALQTSQVCKMLGKHLGINVMVSTGGTGLKDDIIRLS 166

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +G   ++  +  V+DEAD++L   F P ++ +    P  RQ 
Sbjct: 167 DPVHIIVGTPGRILDLAGKGVADLSACQTFVMDEADKLLSPEFTPVVEQLLGFHPKDRQV 226

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++   +  + +P  I +     T   I   +   + +  +K   L  L  
Sbjct: 227 MLFSATFPIVVKSFKDKHMNSPYEINL-MDELTLRGITQYYA--FVEEKQKVHCLNTLF- 282

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 283 NKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLV 342

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 343 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYRI 402

Query: 361 EK 362
           E+
Sbjct: 403 EQ 404


>gi|147828502|emb|CAN77581.1| hypothetical protein VITISV_015347 [Vitis vinifera]
          Length = 786

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 133/450 (29%), Positives = 220/450 (48%), Gaps = 73/450 (16%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +  A LGL P++V ++   G     PIQ   +   L+  D+   A+TGTGKT +F +P++
Sbjct: 116 LALAQLGLPPRLVESLEQRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPII 175

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L +        R   R+PR L+L PTRELA QV    ++      L+   + GG+ + 
Sbjct: 176 KRLSEDDEKRTSQRRSGRLPRVLVLAPTRELAKQVEKEIKESAPY--LSTVCVYGGVSYI 233

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L RG DV++ TPGRI+D      L +  ++ LV+DEAD+ML +GF   ++ I   
Sbjct: 234 TQQNALSRGVDVVVGTPGRIIDLIKGNSLKLGEVQNLVLDEADQMLAVGFEEDVEVILEK 293

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT-----------PSSTAETIEHC-- 220
           +P  RQ++LFSATM   ++K++  +L NP  I++             P +  +T++H   
Sbjct: 294 LPSERQSMLFSATMPAWVKKLARKYLDNPLTIDLGNFCPHWGLNLEPPKNPPQTLDHVGD 353

Query: 221 ----------FVATYAQYSKKCALLQQLLQSQDTMKNG---------------IIFCNQK 255
                       A     + K  +L  L+        G               I+F   K
Sbjct: 354 HDEKLAEGIKLYAIPTTATSKRTILSDLITKNIVKDRGGFQYGHKVYAKGGKTIVFTQTK 413

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           ++   +  +L     +  A+HG+I Q  R + L+ F++G   ++VA+D+AARGLDIP+V 
Sbjct: 414 RDADEVSMAL-TNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 472

Query: 316 ---------HVFNFDVPNRAENYIHRIGRTGRAGRHGKA---FTLVAKEDIKHID----- 358
                     + ++++PN  E ++HR GRTGRAG+ G A   FT   +  +K ++     
Sbjct: 473 LKYVDLLFLQIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVKSLERDVGC 532

Query: 359 --------AIEKLIEKKVDWLNGDLSSLNP 380
                   AIE+++E   + +   L+ ++P
Sbjct: 533 KFEFISPPAIEEVLESSAEQVVATLNGVHP 562


>gi|307706950|ref|ZP_07643749.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
 gi|307617664|gb|EFN96832.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
          Length = 447

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/367 (34%), Positives = 192/367 (52%), Gaps = 11/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  ++ PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALEELKFITPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   +  + V ++  +GG     Q +K
Sbjct: 61  QQLDETSDSVQ---AVITAPSRELATQIYQAARQIAAHSEVEVRVVNYVGGTDKARQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L ++     V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKANTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQ 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +  + +   L 
Sbjct: 178 LQLMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQLT 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           QL+Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K    
Sbjct: 238 QLMQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDF 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   
Sbjct: 294 EYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSD 353

Query: 357 IDAIEKL 363
           I  +EKL
Sbjct: 354 IRELEKL 360


>gi|301300913|ref|ZP_07207085.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851512|gb|EFK79224.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 440

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 196/368 (53%), Gaps = 15/368 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +      +  A+ +  + +PT +Q + IP +L+   V G +QTG+GKT +F+LP+  
Sbjct: 3   NFREFNFKEYIYQALDEINFKEPTEVQARLIPTILKGKSVVGQSQTGSGKTHTFLLPIFQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKL 119
            L   +  V+    +I  P+RELA Q+ +  ++  K  + N+ +   +GG   + Q +KL
Sbjct: 63  NLNAQKDEVQ---AVITTPSRELAYQIYEAAKQLAKFSSENIWIQNYVGGTDKQRQIEKL 119

Query: 120 E-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +     ++I TPGRILD      L ++N   LV+DEAD  LD+GF+     I S +P   
Sbjct: 120 KSHQPQLVIGTPGRILDLVRENALDIHNAHYLVVDEADMTLDLGFLKETDAIASTLPKDL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+     ++ NP    V      + TI++  ++T  +   K  L+  L
Sbjct: 180 QMLVFSATIPEKLRPFLRKYMYNPVIEVVANKHVISPTIDNWLISTKGRDRNK--LIYDL 237

Query: 239 LQSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L    TM      ++F N K+    L + L  QG  V  +HG I  R R +I+   +   
Sbjct: 238 L----TMGEPYLALVFANTKERADELTNYLRSQGLKVAKVHGGIQPRQRKRIMREIQNLD 293

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            Q +VA+DLAARG+DI  V HV N D+P   E ++HR+GRTGR G  G A TL    + K
Sbjct: 294 YQFVVATDLAARGIDIEGVSHVINDDIPEDLEFFVHRVGRTGRNGMKGTAITLYEPSEEK 353

Query: 356 HIDAIEKL 363
            ID +E +
Sbjct: 354 LIDELESM 361


>gi|254450953|ref|ZP_05064390.1| ATP-dependent rna helicase, dead/deah box family [Octadecabacter
           antarcticus 238]
 gi|198265359|gb|EDY89629.1| ATP-dependent rna helicase, dead/deah box family [Octadecabacter
           antarcticus 238]
          Length = 706

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 118/354 (33%), Positives = 189/354 (53%), Gaps = 13/354 (3%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF---VLPMLTILEKGRARVRMPRTL 76
           GY   TP+Q       L+  D+   AQTG+GKT  F   + P L    +   R   P  L
Sbjct: 13  GYDTLTPVQEACGDPALEGRDLLVSAQTGSGKTLGFGIAIAPNLLGDAERFDRADAPLAL 72

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           ++ PTRELA QV    E   +     +A  +GG+    + + L RGA +++ TPGR+ DH
Sbjct: 73  VIAPTRELALQVKRELEWLYEKTGAVIASTVGGMDMRDERRALGRGAHIVVSTPGRLRDH 132

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
             R  + ++N++ +V+DEAD MLD+GF   ++ I    P  RQTLLFSAT+   + K+++
Sbjct: 133 IMRKSIDLSNLKAVVLDEADEMLDLGFREDLEFILDESPKDRQTLLFSATVPASIAKLAQ 192

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
            + +N +R+   T       IE+      A+ ++  A++  L   +    N I+FCN + 
Sbjct: 193 RYQRNAERVATTTGEKQHADIEYRAFRVSARDTEN-AIINVLRYFE--APNAIVFCNTRA 249

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
            V  +   L  +GFSV A+ G + Q  R   L + ++G  ++ VA+D+AARG+D+P++  
Sbjct: 250 TVNRMTTRLSNRGFSVVALSGELSQTERTHALQSMRDGRARVCVATDVAARGIDLPNLDL 309

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           V + ++P   +  +HR GRTGRAGR G +  +V         A+ K  E+ + W
Sbjct: 310 VIHAELPTNQDTLLHRSGRTGRAGRKGTSAMIVPP-------AVRKKAERLLGW 356


>gi|302552921|ref|ZP_07305263.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
           40736]
 gi|302470539|gb|EFL33632.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
           40736]
          Length = 505

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 175/335 (52%), Gaps = 9/335 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G   P PIQ  T+P  L   DV G  +TG+GKT +F L  L      RA  R P  L+L 
Sbjct: 86  GVTVPFPIQGATLPNSLAGRDVLGRGRTGSGKTLAFGLATLARTAGRRAEPRRPLALVLV 145

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA QV D    Y ++  L +A ++GG+    Q   L  GA++++ TPGR+ D  +R
Sbjct: 146 PTRELAQQVTDALTPYARSVRLRLATVVGGMSIGRQAGALRAGAEIVVATPGRLKDLIDR 205

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
           G   +++I I V+DEAD+M DMGF+P +  +   V    Q +LFSAT+   +  +   +L
Sbjct: 206 GDCRLDDIGITVLDEADQMADMGFMPQVTALLDQVRPEGQRMLFSATLDRNVDLLVRRYL 265

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG--IIFCNQKKN 257
            +P    V+  +    T+EH  +  +     +         ++   ++G  I+F + K  
Sbjct: 266 NDPVVHSVDPSAGAVTTMEHHVLHVHEADKYRTT-------TEIAARDGRVIMFLDTKHA 318

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
           V  L   L   G     +HG   Q  R + L+ FK G + ++VA+++AARG+ + ++  V
Sbjct: 319 VDRLTKHLLNSGVRAAGLHGGKSQPQRTRTLAQFKTGHVTVLVATNVAARGIHVDNLDLV 378

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            N D P   ++Y+HR GRT RAG  G   TLV  +
Sbjct: 379 VNVDPPGDHKDYLHRGGRTARAGESGSVVTLVTPD 413


>gi|332204769|gb|EGJ18834.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA47901]
          Length = 447

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 194/368 (52%), Gaps = 13/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   + ++ V ++  +GG   + Q +K
Sbjct: 61  QQLDEASDSVQ---AVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKDRQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ- 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T   + K   + Q 
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKG-HDKNAQIYQL 236

Query: 237 -QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            QL+Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  +   
Sbjct: 237 TQLMQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLD 292

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D  
Sbjct: 293 FEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDS 352

Query: 356 HIDAIEKL 363
            I  +EKL
Sbjct: 353 DIRELEKL 360


>gi|253744188|gb|EET00428.1| ATP-dependent RNA helicase [Giardia intestinalis ATCC 50581]
          Length = 900

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/377 (31%), Positives = 194/377 (51%), Gaps = 25/377 (6%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F  LG LSP V+ A+   GY   TPIQ   IP+++   D C +++TG+GKTA++ +P++ 
Sbjct: 35  FEKLGKLSPPVLKAIHSLGYPTLTPIQKAAIPVIIDGGDACIVSKTGSGKTAAYSIPLVN 94

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKL 119
           +L   RA   + R L++ PTREL  Q+     K  +  +  L V LL+GG   E Q   L
Sbjct: 95  LLACHRATTGI-RGLVIAPTRELCVQIGGVIRKLSRFTDPELRVCLLVGGEALERQFTAL 153

Query: 120 ERGADVLICTPGRIL---DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
               D+++CTPGRIL   D  +  K  + ++E +  DE+DRM +M F   +  I  L+P 
Sbjct: 154 TANPDIIVCTPGRILHIHDQISTFKSQLKSVEYVCFDESDRMFEMNFQQQVNEILDLLPA 213

Query: 177 TR-----------------QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
            R                 Q ++ SATM   L   S+  LQNP  I           + +
Sbjct: 214 ERTGGHITETKSARDFLGYQIIMVSATMPQNLAVFSKARLQNPAIIAAEDDMVLPNELTN 273

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
            F+     Y +  ALL    +        ++F   K +   L   L+        I+G++
Sbjct: 274 QFIYCPTNY-RDAALLYICRELVPKTWKLLVFVATKHHCEYLTSILQANNLRATCIYGSL 332

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
           DQR R   LS+F +G   +++++D+AARG+DIP +  V N++ P+  +NY+HR+GR+ RA
Sbjct: 333 DQRQRTIALSDFDKGRYNILISTDVAARGIDIPSLDCVINYNFPSSGKNYVHRVGRSARA 392

Query: 340 GRHGKAFTLVAKEDIKH 356
           G +G   +++  +++ +
Sbjct: 393 GSYGLCVSIIEGDELPY 409


>gi|309360296|emb|CAP31774.2| CBR-GLH-1 protein [Caenorhabditis briggsae AF16]
          Length = 817

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 129/373 (34%), Positives = 195/373 (52%), Gaps = 31/373 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+  ++  V +AGY K TPIQ   +PL+   HD+   AQTG+GKTA+F+LP+++ 
Sbjct: 398 FEDAKLTETMLKNVRNAGYNKTTPIQQFALPLIRDGHDIMACAQTGSGKTAAFLLPIMSR 457

Query: 63  LE-------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           L         G      PR +IL PTRELA Q+ +   K+     + +  + GG+     
Sbjct: 458 LTDESDLNTAGEGGC-YPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYN 516

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD-MGFIPYIQNITSLV 174
             ++ERGA +++ T GRI      G + ++     V+DEADRM+D MGF   I+ I    
Sbjct: 517 KSQIERGATIVVGTVGRIKHFCEEGTIKLDKCRYFVLDEADRMIDAMGFGDDIRTIVGYE 576

Query: 175 PF----TRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                  RQTL+FSAT  D +Q+ +  FL Q+   I ++   +       C +  + Q  
Sbjct: 577 GMPQKENRQTLMFSATFPDSVQEAAREFLRQDYSMITIDKIGAA----NKCVLQEFEQCE 632

Query: 230 ---KKCALLQQL---LQSQDTMKNG-------IIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
              KK  LL+ L   L+S  T+ N        I+F  ++     L   L         IH
Sbjct: 633 MCDKKDKLLEMLGVDLESYTTVTNADVYTKKTIVFVARRALADTLAAVLSTAQIPAITIH 692

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G  +QR R + L +F+ G+  +++A+ +A RGLDI  V HV N+D+P+  ++YIHRIGRT
Sbjct: 693 GAREQRERSEALRHFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRT 752

Query: 337 GRAGRHGKAFTLV 349
           GR G  G+A + +
Sbjct: 753 GRVGNSGRATSFI 765


>gi|225426363|ref|XP_002271357.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 480

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 195/361 (54%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 107 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 166

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     +++   +IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 167 KIDPDNNVIQV---VILVPTRELALQTSQVCKELGKHLKIEVMVTTGGTSLKDDIMRLYQ 223

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P ++ +   +P  RQ L
Sbjct: 224 PVHLLVGTPGRILDLSKKGICILKDCSVLVMDEADKLLSPEFQPSVEQLIRFLPQNRQIL 283

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++   + +L+ P  I +     T + I   +   + +  +K   L  L  S
Sbjct: 284 MFSATFPVTVKDFKDRYLKKPYVINL-MDELTLKGITQYY--AFVEERQKVHCLNTLF-S 339

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 340 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 399

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 400 TDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 459

Query: 362 K 362
           +
Sbjct: 460 Q 460


>gi|290998099|ref|XP_002681618.1| predicted protein [Naegleria gruberi]
 gi|284095243|gb|EFC48874.1| predicted protein [Naegleria gruberi]
          Length = 349

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/349 (34%), Positives = 195/349 (55%), Gaps = 19/349 (5%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML--TILEKGRARVRMP----- 73
           + +PT IQ  TIP  L++ ++   A+TGTGKTA++ LP++   I E+ R R+  P     
Sbjct: 2   FTEPTEIQNSTIPKGLKKSNIVASAKTGTGKTAAYSLPIIQKIITERMRRRLAPPGEKQI 61

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
            +LIL PT+ELA QV+++   Y  NY L + L+ GG     Q K +  G D+LI TPGR+
Sbjct: 62  YSLILCPTKELAEQVSEHINNY-VNYTLQIGLIFGGASKITQLKTINNGLDILIATPGRL 120

Query: 134 LDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR------QTLLFSAT 186
           ++   +   L  N++  LV+DE DRML+MGF+P ++ I + +P         Q  ++SAT
Sbjct: 121 VELLKKDDDLKLNDVRYLVLDECDRMLNMGFLPELKYIYNHLPKPSNERDEMQISMYSAT 180

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQSQDTM 245
           +T +++ +   F        +N   S  E I+H  +  +  +   K  L     +     
Sbjct: 181 LTKDVEDLICRFAPTHALFNLNQEFSIPEKIKHIKYSVSKKEMKFKLLLYLLKRKGSLRD 240

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF---KEGTIQLMVAS 302
           K  +IFC  ++ V  L  +L  +G+    IH       R   + +F   +EG  Q+++A+
Sbjct: 241 KKVLIFCRTREKVERLAQNLATRGYKAVGIHKEKSLSFRTNAIKSFSSQEEGECQILIAT 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           D+ ARG+D+PD+  V N+DVP + E+Y+HR+GRTGRAG  G AF+ ++K
Sbjct: 301 DVLARGIDVPDLPCVINYDVPAKPEDYVHRVGRTGRAGNEGLAFSFISK 349


>gi|224101199|ref|XP_002312182.1| predicted protein [Populus trichocarpa]
 gi|222852002|gb|EEE89549.1| predicted protein [Populus trichocarpa]
          Length = 592

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 131/381 (34%), Positives = 212/381 (55%), Gaps = 28/381 (7%)

Query: 3   FADL--GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           F+DL   +S  V+ A+ ++G+   TP+Q  TIPL+    DV   A TG+GKT +FV+P++
Sbjct: 18  FSDLKPSISEPVLEALTNSGFDYCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 77

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKK 118
            IL +  + +      +I+ PTREL++Q+ +  + +     N    LL+GG+  +A  K 
Sbjct: 78  EILRRSSSPKPHQVMGIIISPTRELSSQIYNVAQPFIATLSNFKSMLLVGGMDVKADVKM 137

Query: 119 LER-GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +E  GA++LI TPGR+ D  +R  +L   N+E+L++DEADR+LDMGF   + +I S +P 
Sbjct: 138 IEEEGANLLIGTPGRLFDIMDRVDVLDFRNLEVLILDEADRLLDMGFQKQLNSIISRLPK 197

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNT---------------PSSTAETIEHCF 221
            R+T LFSAT T+ ++++S+  L+NP ++EV                 PS T   +   +
Sbjct: 198 LRRTGLFSATQTEAVEELSKAGLRNPVKVEVRAETKSLNNSVSGQQLAPSKTPSGLLLEY 257

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIF----CNQKKNVVNLCHSLEKQGFSVCAIHG 277
           +   A   KK + L  LL    + K  I F    C     VV L       GFS+ ++HG
Sbjct: 258 LECEA--DKKPSQLVDLLVKNKSKKIIIYFMTCACVDYWGVV-LPRLTVLNGFSLISLHG 314

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
            + Q +R K L++F   T  +++ +D+AARGLDIP V  +  +D P     ++HR+GRT 
Sbjct: 315 KMKQTAREKALTSFTSLTSGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTA 374

Query: 338 RAGRHGKAFTLVAKEDIKHID 358
           R GR G +   +  ++  +++
Sbjct: 375 RLGRQGSSIVFLLPKEEAYVE 395


>gi|226496647|ref|NP_001140760.1| hypothetical protein LOC100272835 [Zea mays]
 gi|194700960|gb|ACF84564.1| unknown [Zea mays]
 gi|195623902|gb|ACG33781.1| ATP-dependent RNA helicase dhh1 [Zea mays]
          Length = 499

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 197/361 (54%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 126 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 185

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  +++   +IL PTRELA Q +   ++ GK  N+ V +  GG   +    +L +
Sbjct: 186 KIDPEKNAIQV---VILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQ 242

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P ++ +   +P +RQ L
Sbjct: 243 PVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLLAPEFQPSVEALIHFLPPSRQLL 302

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +++  + +L  P  I +     T + I   +   + +  +K   L  L  S
Sbjct: 303 MFSATFPVTVKEFKDKYLPRPYVINL-MDELTLKGITQYY--AFVEERQKVHCLNTLF-S 358

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 359 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 418

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 419 TDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRYGHLGLAVNLITYEDRFNLYRIE 478

Query: 362 K 362
           +
Sbjct: 479 Q 479


>gi|156547575|ref|XP_001602897.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 445

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 191/361 (52%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L  +++  + + G+ KP+PIQ  +IP+ L   DV   A+ GTGKT ++ +P   
Sbjct: 56  EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYSIP--- 112

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LE+   +  + + LI+ PTRELA Q +    +  K+ ++ V +  GG        ++ +
Sbjct: 113 VLEQVDPKKDVIQALIIVPTRELALQTSQILIELAKHMDIKVMVTTGGTNLRDDIMRIYQ 172

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGRILD  ++    M++  ILV+DEAD++L   F   + ++ S +P  RQ L
Sbjct: 173 KVQVIIATPGRILDLMDKNVANMDHCRILVLDEADKLLSQDFKGMLDHVISRLPHERQIL 232

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    +++  E  L++P  I +    +     ++     + Q  +K   L  L  S
Sbjct: 233 LYSATFPLTVKQFMEKHLRDPYEINLMEELTLKGVTQY---YAFVQERQKVHCLNTLF-S 288

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   +   G+    IH  + Q  R ++  +F+ G  + +V 
Sbjct: 289 KLQINQSIIFCNTTQRVELLAKKITDLGYCCYYIHAKMAQAHRNRVFHDFRAGLCRNLVC 348

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  IE
Sbjct: 349 SDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRFNLHRIE 408

Query: 362 K 362
           +
Sbjct: 409 Q 409


>gi|91206551|sp|Q2UKX3|DBP8_ASPOR RecName: Full=ATP-dependent RNA helicase dbp8
 gi|83767653|dbj|BAE57792.1| unnamed protein product [Aspergillus oryzae]
          Length = 443

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/374 (34%), Positives = 199/374 (53%), Gaps = 27/374 (7%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           L +SP +V ++      KPT IQ   IP +L+  D  G ++TG+GKT +F +P   IL+K
Sbjct: 18  LNVSPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFAVP---ILQK 74

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
                     ++L PTRELA Q+ +  +      ++   L+ GG    +Q   L +   V
Sbjct: 75  WAQDPFGIFAVVLTPTRELALQIYEQIKAISAPQSMKPLLITGGTDMRSQALALSQRPHV 134

Query: 126 LICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFT- 177
           +I TPGR+ DH N         +  + ++V+DEADR+L  G    +P ++   S +P + 
Sbjct: 135 VIATPGRLADHINTSGEDTVCGLKRVRMVVLDEADRLLAPGPGSMLPDVETCLSALPPSS 194

Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE-------TIEHCFVATYAQ-- 227
            RQTLLF+AT+T E++      L++  R E   P    E        I      TY +  
Sbjct: 195 ERQTLLFTATLTPEVRA-----LKSMPRAENKPPVFVTEISTENNGAIPPTLKQTYLKVP 249

Query: 228 YSKKCALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
            + + A L  LL ++ ++ K  IIFCN  K    L   L +    V ++H  + Q  R  
Sbjct: 250 MTHREAFLHVLLSTERNSTKPAIIFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSERNS 309

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L+ F+    +++VA+D+A+RGLDIP V  V NFDVP   ++Y+HR+GRT RAGRHG+A 
Sbjct: 310 NLARFRASAARILVATDVASRGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGRHGEAV 369

Query: 347 TLVAKEDIKHIDAI 360
           TLV + D++ + AI
Sbjct: 370 TLVGQRDVQLVLAI 383


>gi|320535422|ref|ZP_08035531.1| ATP-dependent RNA helicase DbpA family protein [Treponema
           phagedenis F0421]
 gi|320147709|gb|EFW39216.1| ATP-dependent RNA helicase DbpA family protein [Treponema
           phagedenis F0421]
          Length = 322

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 116/327 (35%), Positives = 191/327 (58%), Gaps = 8/327 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   +   + DAGY + TP+Q + +       D+   +QTGTGKTA++++P+L
Sbjct: 1   MKFTELNLDLSLQQGINDAGYEECTPVQKEVLEKAFSNADLYVQSQTGTGKTAAYLIPIL 60

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L +  A+ +    LI+ PTRELA Q+ +   K  K+  +T A   GG+ +E Q K L
Sbjct: 61  QRMLSEPAAQKKT--ALIMVPTRELAVQIEEECAKLAKHTGITAASFYGGVGYEKQTKSL 118

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-- 177
           + GA +LI TPGR++D    G + ++ +  LV+DEADRM DMGF P ++ +  ++P    
Sbjct: 119 KEGAQILIGTPGRVIDLQKSGTMKLDTVGFLVVDEADRMFDMGFYPDLRTLLQVLPKAEK 178

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT+   ++ ++  + +N + I +++   T E I+      +     K  LL  
Sbjct: 179 RQTMLFSATLNTWVKNLAWEYTENAQEISIDSDVITVEEIDQKVF--HVSSDAKMQLLLG 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L +++  +N IIFCN KK+V  +   L         ++G++ Q +R  I++ FK G I 
Sbjct: 237 IL-AREKPENLIIFCNTKKSVEIVAKRLGVNNHICEFLNGDLPQHTRQAIINKFKTGKIN 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPN 324
            +VA+D+AARG+DI ++  V N+D+PN
Sbjct: 296 CVVATDVAARGIDINNLEMVINYDLPN 322


>gi|297742547|emb|CBI34696.3| unnamed protein product [Vitis vinifera]
          Length = 438

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 193/361 (53%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 65  EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPAL- 123

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             EK      + + +IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 124 --EKIDPDNNVIQVVILVPTRELALQTSQVCKELGKHLKIEVMVTTGGTSLKDDIMRLYQ 181

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P ++ +   +P  RQ L
Sbjct: 182 PVHLLVGTPGRILDLSKKGICILKDCSVLVMDEADKLLSPEFQPSVEQLIRFLPQNRQIL 241

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++   + +L+ P  I +    +     ++     + +  +K   L  L  S
Sbjct: 242 MFSATFPVTVKDFKDRYLKKPYVINLMDELTLKGITQY---YAFVEERQKVHCLNTLF-S 297

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 298 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 357

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 358 TDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 417

Query: 362 K 362
           +
Sbjct: 418 Q 418


>gi|116493012|ref|YP_804747.1| superfamily II DNA/RNA helicase [Pediococcus pentosaceus ATCC
           25745]
 gi|116103162|gb|ABJ68305.1| Superfamily II DNA and RNA helicase [Pediococcus pentosaceus ATCC
           25745]
          Length = 453

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 123/368 (33%), Positives = 197/368 (53%), Gaps = 15/368 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    L P ++ A+ +  +  PTP+Q K IPL+     V G +QTG+GKT +F+LP+  
Sbjct: 3   EFQKFNLKPFLMTALDEINFKTPTPVQDKVIPLIADGKSVVGQSQTGSGKTHAFLLPIFN 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL--LIGGIPFEAQNKKL 119
            ++     +   + +I  P+RELA Q+ ++ ++      + + +   +GG   + Q +KL
Sbjct: 63  NID---PELNAIQAVITTPSRELAYQIYEDAKQLASASEVKIEIGNYVGGTDKKRQVEKL 119

Query: 120 -ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 ++I TPGR+LD      L    ++ +VIDEAD  LDMGF+  +  I + +P   
Sbjct: 120 GHHQPAIIIGTPGRVLDLLKERALNFRQVKYMVIDEADMTLDMGFLNAVDQIAAAMPSKL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+   L    + ++ +P   E+ T ++ + TI++  ++T +  S K  L+ +L
Sbjct: 180 QILVFSATIPQRLNVFLKKYMDHPVIEEIPTETTISPTIKNILISTKS--SGKNNLIYKL 237

Query: 239 LQSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L    TM      ++F N K+    L   L+ QG  V  IHG I  R R +I+ +     
Sbjct: 238 L----TMGEPYLALVFTNTKERADELTDYLKAQGLDVAKIHGGIQPRERKRIMKDIHRLR 293

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            Q +VA+DLAARG+DI  V  V N D+P   E +IHR+GRTGR G  G A TL    +  
Sbjct: 294 YQYVVATDLAARGIDIDGVSLVINDDIPTDLEFFIHRVGRTGRNGMSGTAITLYMPNEED 353

Query: 356 HIDAIEKL 363
            +  +EK+
Sbjct: 354 KVADVEKM 361


>gi|260949783|ref|XP_002619188.1| hypothetical protein CLUG_00347 [Clavispora lusitaniae ATCC 42720]
 gi|238846760|gb|EEQ36224.1| hypothetical protein CLUG_00347 [Clavispora lusitaniae ATCC 42720]
          Length = 764

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/355 (34%), Positives = 199/355 (56%), Gaps = 13/355 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FADL ++      + +A +V  T IQ K IPL L+  D+ G A+TG+GKT +F++P++  
Sbjct: 46  FADLPITEATARGLKEANFVSMTDIQRKCIPLALKGEDIMGTARTGSGKTLAFLVPVIER 105

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++      +     LI+ PTRELA Q+ +   K GK+ + +  L+ GG   + + +++ R
Sbjct: 106 LVHSNITGLDGLAALIISPTRELAVQIFEVLTKIGKHNSFSAGLVTGGKDVQYEKERVAR 165

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+ TPGR+  H N    +  +N+++LV+DEADR LDMGF   I +I S +   RQT
Sbjct: 166 -MNILVGTPGRVSQHLNETFGMDTSNLQVLVLDEADRCLDMGFKKQIDSIVSHLSPERQT 224

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVN---TPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           LLFSAT +D ++ ++   L NP ++ V+   T S+T ET++  +V    +  +K  +L  
Sbjct: 225 LLFSATQSDSIKDLARLSLTNPIKVGVSSDATLSATPETLDQYYVRIPLE--EKLDVLWS 282

Query: 238 LLQSQDTMKNGI-IFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            ++S   +K+ I +F +  K V     S    + G S+  ++G   Q SR++  + F   
Sbjct: 283 FIKSH--LKSKILVFFSSSKQVQYTYESFRTLQPGISLLKLYGRHKQTSRLETTTKFSHA 340

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
               + A+D+ ARGLD P +  V   D P  A  Y+HR+GR  R GR GK+  ++
Sbjct: 341 QYACLFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGRCARFGRPGKSLLML 395


>gi|294944227|ref|XP_002784150.1| eukaryotic translation initiation factor 4A, putative [Perkinsus
           marinus ATCC 50983]
 gi|239897184|gb|EER15946.1| eukaryotic translation initiation factor 4A, putative [Perkinsus
           marinus ATCC 50983]
          Length = 389

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 123/359 (34%), Positives = 200/359 (55%), Gaps = 5/359 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ KP+ IQ + I  ++   D  G AQ+GTGKT +F +  L  ++    ++R  + LIL 
Sbjct: 35  GFEKPSAIQSRAIKPLIAGRDTIGQAQSGTGKTGAFTVGCLARVD---PKLRATQALILA 91

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA Q+    +      ++     IGG       +KL  G  V++ TPGR+ D  N+
Sbjct: 92  PTRELAQQITSVTKSLADFLDIRCHACIGGTAVREDIEKLREGQHVVVGTPGRVFDMANK 151

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
             L +++++I V+DEAD ML  GF   I ++  L+P   Q  LFSAT+ D++ +++  F+
Sbjct: 152 RHLRLDDLKIFVLDEADEMLSRGFKDQIYDVFRLLPSNVQVALFSATLPDDIIQLTTKFM 211

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
           ++P RI V T   T E I   ++A  ++   K   L+ L ++  T+   II+CN ++ V 
Sbjct: 212 RDPVRILVKTDELTLEGIRQFYIAIDSE-EYKFDTLKDLYETL-TITQAIIYCNTRRKVD 269

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            L   + +   +V  +H ++ Q  R  I+  F+ G+ ++++++DL ARG+D+  V  V N
Sbjct: 270 YLAEKMHEADHTVSCMHADLTQEERDLIMREFRSGSSRVLISTDLLARGIDVQQVSLVIN 329

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           +D+P   ENY+HRIGR GR GR G A   V  EDI  +  IE+    +VD +  D++  
Sbjct: 330 YDIPASIENYLHRIGRGGRFGRKGVAINFVVPEDISQLREIERHYNTQVDEMPMDVADF 388


>gi|307705236|ref|ZP_07642104.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
 gi|307621209|gb|EFO00278.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
          Length = 447

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/367 (34%), Positives = 192/367 (52%), Gaps = 11/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   +  + V ++  +GG     Q +K
Sbjct: 61  QQLDEASDSVQ---AVITAPSRELATQIYQAARQIAAHSEVEVRVVNYVGGTDKARQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQ 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +  + +   L 
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQLT 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           QL+Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K    
Sbjct: 238 QLMQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDF 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   
Sbjct: 294 EYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSD 353

Query: 357 IDAIEKL 363
           I  +EKL
Sbjct: 354 IRELEKL 360


>gi|226531524|ref|NP_001148960.1| ATP-dependent RNA helicase dhh1 [Zea mays]
 gi|195623636|gb|ACG33648.1| ATP-dependent RNA helicase dhh1 [Zea mays]
          Length = 517

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 115/361 (31%), Positives = 198/361 (54%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 144 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 203

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++ +  +++   +IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 204 KIDQEKNAIQV---VILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRLYQ 260

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILD   +G  ++ +  +L++DEAD++L   F P I+ +   +P +RQ L
Sbjct: 261 PVHLIVGTPGRILDLTKKGVCILKDCSMLIMDEADKLLSPEFQPSIEQLIRYLPASRQIL 320

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +++  + +L  P  I +     T + I   +   + +  +K   L  L  S
Sbjct: 321 MFSATFPVTVKEFKDKYLPKPYVINL-MDELTLKGITQFYA--FVEERQKVHCLNTLF-S 376

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 377 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 436

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 437 TDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 496

Query: 362 K 362
           +
Sbjct: 497 Q 497


>gi|124487920|gb|ABN12043.1| putative eukaryotic translation initiation factor 4A
           [Maconellicoccus hirsutus]
          Length = 372

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/333 (35%), Positives = 185/333 (55%), Gaps = 10/333 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L  +++  +   G+ KP+ IQ + I   ++ HDV   AQ+GTGKTA+F    ++I
Sbjct: 47  FDEMNLKQELLRGIYAYGFEKPSAIQQRAIIPCVKGHDVIAQAQSGTGKTATF---SISI 103

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121
           L++    +   + LIL PTRELA Q        G    N      IGG       ++LE 
Sbjct: 104 LQQIDPSLNECQALILAPTRELAQQTQKVVLALGDFMENCKCHACIGGTNIREDMRRLEE 163

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR+ D   R  L +++I++ V+DEAD ML  GF   I  +   +P   Q +
Sbjct: 164 GAQVVVGTPGRVYDMIIRKSLKIDHIKVFVLDEADEMLSRGFKEQIHQVFQHLPQDVQVI 223

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS+ F++NP +I V     T E I+  +V    +  K    L  L   
Sbjct: 224 LLSATMPQDVLEVSKQFMRNPVQILVKKEELTLEGIKQFYVFVEKEEWK----LDTLCDL 279

Query: 242 QDTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            DT+     +IFCN ++ V  L   + K   +V ++HG++DQ+ R KI+ +F+ G+ +++
Sbjct: 280 YDTLSITQAVIFCNTRRKVDWLTDKMTKNDHTVSSMHGDMDQKEREKIMKHFRTGSSRVL 339

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           + +DL ARG+D+  V  V N+D+P+  ENYIHR
Sbjct: 340 ITTDLLARGIDVQQVSLVINYDLPSNRENYIHR 372


>gi|148992424|ref|ZP_01822119.1| peptide chain release factor 2 [Streptococcus pneumoniae SP9-BS68]
 gi|168488430|ref|ZP_02712629.1| ATP-dependent RNA helicase [Streptococcus pneumoniae SP195]
 gi|147928741|gb|EDK79754.1| peptide chain release factor 2 [Streptococcus pneumoniae SP9-BS68]
 gi|183573033|gb|EDT93561.1| ATP-dependent RNA helicase [Streptococcus pneumoniae SP195]
 gi|332073114|gb|EGI83593.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA17570]
          Length = 447

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/367 (33%), Positives = 192/367 (52%), Gaps = 11/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   + ++ V ++  +GG     Q +K
Sbjct: 61  QQLDEASDSVQ---AVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQ 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T     + +   L 
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYWLT 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           QL+Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  +    
Sbjct: 238 QLMQPYLAM----IFVNTKTRADELHSYLTSQGLKVAKIHGDIAPRERKRIMNQVQNLDF 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   
Sbjct: 294 EYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSD 353

Query: 357 IDAIEKL 363
           I  +EKL
Sbjct: 354 IRELEKL 360


>gi|19387223|gb|AAL87142.1|AF479823_1 DEAD box RNA helicase Vasa [Pantodon buchholzi]
          Length = 394

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 136/409 (33%), Positives = 215/409 (52%), Gaps = 34/409 (8%)

Query: 45  AQTGTGKTASFVLPMLT-ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKN 98
           AQTG+GKTA+F+LP+L  ++  G A  R      P  +++ PTREL  Q+     K+   
Sbjct: 4   AQTGSGKTAAFLLPILQQLMTSGVASSRFSEVQEPEAIVVAPTRELINQIYLEARKFAFG 63

Query: 99  YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             +   ++ GG       +++ +G ++L  TPGR+LD   RGK+ +N +  LV+DEADRM
Sbjct: 64  TCVRPVVVYGGTSTMYTIREVLKGCNILCGTPGRLLDIIGRGKVGLNKLRYLVLDEADRM 123

Query: 159 LDMGFIPYIQNITS---LVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA 214
           LDMGF P ++ + +   + P   RQTL+FSAT  +++Q+++ +FL+      V      A
Sbjct: 124 LDMGFEPDMRRLVASPGMPPKEERQTLMFSATYPEDIQRLAADFLKRDYLFLVVGQVGGA 183

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
                  V   +QYSK+  L++ L  + +  +  ++F   K+    +   L ++  S  +
Sbjct: 184 CNDVEQHVVEVSQYSKREQLVEILRTTGN--ERTMVFVETKRKADFIATFLCQEQISTTS 241

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           IHG+ +QR R + L +F+ G   ++VA+ +AARGLDI  V HV NFD+P+  + Y+HRIG
Sbjct: 242 IHGDREQREREQALGDFRSGKCPVLVATSVAARGLDIEHVQHVVNFDLPSTIDEYVHRIG 301

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           RTGR G  GKA +    E      A   L    V  L+G    +   LE+I  + H    
Sbjct: 302 RTGRCGNTGKAISFFDPE------ADAPLARSLVKILSGAQQEVPKWLEEIAFSAHG--- 352

Query: 395 KNNPIPQKSTGFDRRKKNYSSQKSHIPLKESE--KISKLQQDIQENDAD 441
                   +T F+ R K ++S  +    KE    +   +Q  +Q  DAD
Sbjct: 353 --------TTAFNPRGKVFASTDTR---KEGAFPRAEPVQPAVQNPDAD 390


>gi|75319612|sp|Q41382|RH7_SPIOL RecName: Full=DEAD-box ATP-dependent RNA helicase 7
 gi|1488647|emb|CAA68193.1| RNA helicase [Spinacia oleracea]
          Length = 685

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/333 (36%), Positives = 178/333 (53%), Gaps = 14/333 (4%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR-------VRMPRTLIL 78
           PIQ  T   V+   D+ G A+TG GKT +FVLP++  L  GR +        R+P  L+L
Sbjct: 132 PIQAMTFDNVIDGCDLVGRARTGQGKTLAFVLPIVESLVNGRTKDLRRSGHGRLPSVLVL 191

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QV  +F+ YG    LT   + GG PF +Q   L RG D+++ TPGR+ D   
Sbjct: 192 LPTRELATQVLADFQVYGGAVGLTACSVYGGAPFHSQISSLTRGVDIVVGTPGRVKDLLE 251

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--QTLLFSATMTDELQKVSE 196
           +G L + ++   V+DEAD ML MGF+  ++ I   V      QTLLFSAT+   ++++S 
Sbjct: 252 KGVLKLGSLLFRVLDEADEMLKMGFVDDVELILGKVDHVSKVQTLLFSATLPSWVKQIST 311

Query: 197 NFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
            FL++ K+ +++ +      +I    +      S +  L+  +++   +    IIF   K
Sbjct: 312 RFLKSAKKTVDLVSDQKMKASISVRHIVIPCSASARPDLIPDIIRCYGSGGRSIIFTETK 371

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           ++   L   L         +HG+I Q  R   L  F+ G    +VA+++AARGLDI DV 
Sbjct: 372 ESASQLAGLLT----GARPLHGDIQQTQREVTLKGFRTGKFMTLVATNVAARGLDINDVQ 427

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +   + P   E+YIHR GRTGRAG  G A  L
Sbjct: 428 LIIQCEPPRDVEDYIHRSGRTGRAGNTGVAVML 460


>gi|195614632|gb|ACG29146.1| ATP-dependent RNA helicase dhh1 [Zea mays]
          Length = 517

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 115/361 (31%), Positives = 198/361 (54%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 144 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 203

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++ +  +++   +IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 204 KIDQEKNAIQV---VILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRLYQ 260

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILD   +G  ++ +  +L++DEAD++L   F P I+ +   +P +RQ L
Sbjct: 261 PVHLIVGTPGRILDLTKKGVCILKDCSMLIMDEADKLLSPEFQPSIEQLIRYLPASRQIL 320

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +++  + +L  P  I +     T + I   +   + +  +K   L  L  S
Sbjct: 321 MFSATFPVTVKEFKDKYLPKPYVINL-MDELTLKGITQFYA--FVEERQKVHCLNTLF-S 376

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 377 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 436

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 437 TDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 496

Query: 362 K 362
           +
Sbjct: 497 Q 497


>gi|291244806|ref|XP_002742284.1| PREDICTED: eukaryotic translation initiation factor 4A-like
           [Saccoglossus kowalevskii]
          Length = 425

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 131/382 (34%), Positives = 210/382 (54%), Gaps = 13/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F + +L 
Sbjct: 51  NFDNMNLKEDLLRGIYAYGFEKPSAIQQRAIIPCCKGRDVIAQAQSGTGKTATFSIAILQ 110

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            LE  R      + LIL PTRELA Q+       G          IGG       +KLE 
Sbjct: 111 QLEITRMS---SQALILAPTRELAQQIQKVVIALGDYMGAQCHACIGGTNVREDMRKLES 167

Query: 122 GADVLICTPGRILDHFNRGKLL--MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           G  V++ TPGR+ D  NR   L  +++I+I V+DEAD ML  GF   I ++  L+P + Q
Sbjct: 168 GQHVVVGTPGRVHDMINRRAPLSDVSDIKIFVLDEADEMLSRGFKDQIYDVFRLLPHSVQ 227

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQ 236
            +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K    C L +
Sbjct: 228 VILLSATMPVDVLEVTKKFMRDPIRILVRKEELTLEGIRQFYINVEREEWKLDTLCDLYE 287

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L     T+   +IF N ++ V  L   ++ + F+V ++HG++DQ+ R  I+  F+ G+ 
Sbjct: 288 TL-----TITQAVIFSNTRRKVDWLTEKMQGRDFTVSSLHGDMDQKERDIIMREFRSGSS 342

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++ +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   + ++D++ 
Sbjct: 343 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFMTEDDVRT 402

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
           +  IE+    +VD +  +++ L
Sbjct: 403 LRDIEQFYNTQVDEMPMNVADL 424


>gi|113931550|ref|NP_001039224.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Xenopus (Silurana)
           tropicalis]
 gi|89272468|emb|CAJ82454.1| novel GUCT (NUC152) domain containing DEAD/DEAH box helicase
           [Xenopus (Silurana) tropicalis]
          Length = 755

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 202/376 (53%), Gaps = 22/376 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+   +S   +  +   G     PIQ KT        DV   A+TGTGKT SF +P++ 
Sbjct: 180 DFSKFPISKDTIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVE 239

Query: 62  ILEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L + +   AR R PR +IL PTRELA Q+ +      K   L V    GG P++ Q   
Sbjct: 240 RLNEDQQPLARGRAPRVIILTPTRELAIQITNEIRSITKK--LKVCCFYGGTPYQQQVFS 297

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV---- 174
           ++ G D L+ TPGR+ D     +L +  ++ +V+DE D M DMGF   ++ I S+     
Sbjct: 298 IKEGFDFLVGTPGRVRDLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYKPD 357

Query: 175 -PFTRQTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSK 230
                QTLLFSAT  D +  V++ +++   ++I++  +     A T+EH  +A     S+
Sbjct: 358 PEENPQTLLFSATCPDWMYNVAKKYMKKQFEKIDLVGHRSQKAAITVEH--LAIECTRSQ 415

Query: 231 KCALLQQLLQ-SQDTMKNGIIFCNQKKNVVNL---CHSLEKQGFSVCAIHGNIDQRSRMK 286
           K A+L  ++Q    +    IIFC+ K     L   C SL++   S   +HG++ Q+ R  
Sbjct: 416 KAAVLGDIVQVYSGSHGKSIIFCDSKLEAHELATNCGSLKQ---SAKPLHGDLQQKEREV 472

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
           IL  F++G+ +++VA+++AARGLDIP+V  V  +  P  A+ Y+HR GRTGRAGR G   
Sbjct: 473 ILKGFRQGSFEVLVATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGICI 532

Query: 347 TLVAKEDIKHIDAIEK 362
           +L    +  ++  +E+
Sbjct: 533 SLYEPRERHYLRNVER 548


>gi|281365720|ref|NP_729194.2| CG10077, isoform C [Drosophila melanogaster]
 gi|272455065|gb|AAN12065.2| CG10077, isoform C [Drosophila melanogaster]
          Length = 472

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 114/316 (36%), Positives = 177/316 (56%), Gaps = 11/316 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F + G    V+  +   G+ KPT IQ +  P+ +   D+ G+AQTG+GKT ++VLP +
Sbjct: 157 IEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAV 216

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   LE+G      P  L+L PTRELA Q+     ++G N ++    + GG P   
Sbjct: 217 VHINNQPRLERGDG----PIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQ 272

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +
Sbjct: 273 QARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 332

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQ L++SAT   E+++++E FL N  ++ + + S +A       V    +  K   L
Sbjct: 333 RPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKL 392

Query: 235 LQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           ++ L   S +     IIF   KK V  +  ++ +QG+  CAIHG+  Q+ R  +LS+F+ 
Sbjct: 393 IKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRN 452

Query: 294 GTIQLMVASDLAARGL 309
           G   ++VA+D+AARGL
Sbjct: 453 GRHSILVATDVAARGL 468


>gi|148224339|ref|NP_001082033.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Xenopus laevis]
 gi|10764780|gb|AAG22818.1|AF302422_1 RNA helicase II/Gu [Xenopus laevis]
          Length = 800

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 203/376 (53%), Gaps = 22/376 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+   +S   +      G     PIQ KT   V    DV   A+TGTGKT SF +P++ 
Sbjct: 222 DFSKFPISKDTIKNXQAKGVTYLFPIQSKTFHTVYSGKDVVVQARTGTGKTFSFGIPLVE 281

Query: 62  ILEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L + +   AR R PR +IL PTRELA Q+ +      K   L VA   GG P++ Q   
Sbjct: 282 RLSEDQQPLARGRAPRVIILTPTRELAIQITNELRSMTKK--LKVACFYGGTPYQQQVFA 339

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL----- 173
           ++ G D L+ TPGRI D     +L +  ++ +V+DE D M D+GF   ++ I S+     
Sbjct: 340 IKDGIDFLVGTPGRIRDLVQNYRLDLTALKHVVLDEVDMMFDVGFSEQVEEILSVRYKPD 399

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSK 230
                QTLLFSAT  D +  V++ +++   +++++  +     A T+EH  +A     S+
Sbjct: 400 PEENPQTLLFSATCPDWMYNVAKKYMRKQYEKVDLVGHRSQKAAITVEH--LAIECNRSQ 457

Query: 231 KCALLQQLLQ-SQDTMKNGIIFCNQKKNVVNL---CHSLEKQGFSVCAIHGNIDQRSRMK 286
           K A+L  ++Q    +    IIFC+ K     L   C SL++   S   +HG++ Q+ R  
Sbjct: 458 KAAVLGDIVQVYSGSHGKTIIFCDSKLQAHELSTNCGSLKQ---SAKPLHGDLQQKEREV 514

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
           +L  F++GT ++++A+++AARGLDIP+V  V  +  P  A+ Y+HR GRTGRAGR G   
Sbjct: 515 VLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCI 574

Query: 347 TLVAKEDIKHIDAIEK 362
           +L    +  ++  +E+
Sbjct: 575 SLYEPWEKHYLRNVER 590


>gi|330038909|ref|XP_003239737.1| eukaryotic initiation factor 4a [Cryptomonas paramecium]
 gi|327206662|gb|AEA38839.1| eukaryotic initiation factor 4a [Cryptomonas paramecium]
          Length = 390

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 119/378 (31%), Positives = 200/378 (52%), Gaps = 11/378 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++GL+ K+V  +   GY KP+ IQ + I  +L++ DV   AQ+GTGKTA+FV+  L 
Sbjct: 18  SFDEMGLNDKLVQGIYGYGYEKPSLIQQRGILPLLKKRDVIAQAQSGTGKTATFVIGTLQ 77

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-E 120
            + +    + +   L + PTRELA Q+  +F++ G +  +   + +GG       + L +
Sbjct: 78  NINRTTHSICV---LTITPTRELAFQIEQSFKEIGVHLKVKTQVCVGGTRLSRDIRYLLK 134

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+ D  +    ++  ++ ++IDEAD M   GF   I  I   VP     
Sbjct: 135 YNPRIIIATPGRLFDILSLNTKILKKLQYVIIDEADEMFSKGFKFQIYRIFKFVPKLCTI 194

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK--CALLQQL 238
            LFSAT+  E+ ++ E  +  P RI V     T E I+  ++A   ++  +  C + + +
Sbjct: 195 GLFSATLPKEIIQIVETIMNEPVRIFVKKNELTLEGIKQFYIAVEEKWKLEAVCDIYRLM 254

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +Q      I++ N KK    L   +   GF V  +HG+I Q  R  I+ NF+ G  ++
Sbjct: 255 KITQS-----IVYVNSKKKAEWLAEKMSSNGFEVLCLHGSITQADRSAIMKNFRLGIRRV 309

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +DL +RG+D+  V  V N+D+P   E YIHRIGR+GR G+ G A  L+ K ++  + 
Sbjct: 310 LITTDLLSRGIDVQQVCLVINYDLPTSKEIYIHRIGRSGRFGKKGIAVNLLVKNEVFVLR 369

Query: 359 AIEKLIEKKVDWLNGDLS 376
            IE      ++ +  D++
Sbjct: 370 EIESYYNTTIEEMPLDIN 387


>gi|321250245|ref|XP_003191742.1| translation initiation factor [Cryptococcus gattii WM276]
 gi|317458209|gb|ADV19955.1| Translation initiation factor, putative [Cryptococcus gattii WM276]
          Length = 401

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 196/368 (53%), Gaps = 5/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ +P+ IQ + I  ++   D    AQ+GTGKTA+F    ++
Sbjct: 29  NFDDMKLKGELLRGIYAYGFERPSAIQQRAIMPIVTGRDCIAQAQSGTGKTATF---SVS 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    V+  + L+L PTRELA Q+       G   N+     +GG        +L  
Sbjct: 86  ILQRIDTTVKKTQALVLAPTRELAQQIQKVVIALGDYLNVDCHACVGGTAVREDIARLNE 145

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D  NRG L    + +  +DEAD ML  GF   I  I  L+P   Q +
Sbjct: 146 GPHIVVGTPGRVFDMINRGALKTEAVMMFCLDEADEMLSTGFKESIYEIFQLLPGETQVV 205

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+  V++ F+++P RI V     T E I   ++    +  K   L    L  
Sbjct: 206 LLSATMAPEVLDVTKKFMRDPIRILVKKDELTLEGIRQFYINVEKEEWKLETLCD--LYE 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFC+ ++ V  L   L  + F+V A+HG++ Q  R  I+  F+ G+ ++++ 
Sbjct: 264 TVTITQAVIFCSTRRKVDWLTQQLHDRQFTVSAMHGDMKQEEREVIMKEFRSGSSRVLIT 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V+ ED   ++ IE
Sbjct: 324 TDLLARGIDVQQVSLVINYDLPSSKENYIHRIGRGGRFGRKGVAINFVSNEDKNMLEEIE 383

Query: 362 KLIEKKVD 369
                +V+
Sbjct: 384 TYYNTQVE 391


>gi|145475849|ref|XP_001423947.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391009|emb|CAK56549.1| unnamed protein product [Paramecium tetraurelia]
          Length = 737

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 150/461 (32%), Positives = 239/461 (51%), Gaps = 40/461 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L L  K+V  ++   + KPT IQ + +P VL   +V G+A+TG+GKT ++V PML
Sbjct: 188 ISFGHLQLDQKLVNKIVAQNFEKPTAIQSQALPCVLSGRNVIGVAKTGSGKTIAYVWPML 247

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +   RA  +   P  L++ PTREL  QV    +KY + + ++V+ L+GG     Q K+
Sbjct: 248 VHVSAQRAVEKKEGPIGLVVVPTRELGQQVYLETKKYAQLFQISVSALLGGENKHHQWKE 307

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D++I TPGR+++   +    +     +V+DEAD+M  +GF   I++I   +   +
Sbjct: 308 LRAGVDIIIATPGRLIEMVKKKATNLQRCTYIVLDEADQMFSLGFEYQIRSIIGQIRPDK 367

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           Q LLF+ATM  +++++  + L +P  I +    +   E I+   V       +   LLQ 
Sbjct: 368 QILLFTATMKKKIRQLCVDMLIDPIVITIGENENQVNEDIKQLPVIVDDDEGRLRWLLQN 427

Query: 238 LLQSQDTMKNG--IIFCNQKKNVVNLCHSL-----EKQGFSVCAIHGNIDQRSRMKILSN 290
           L   +  ++NG  +IF NQ    +  C SL     +K G     ++G+  Q  R  I++ 
Sbjct: 428 L---KTYLQNGKVLIFANQ----MGQCESLLSEIKQKLGIQGLTLYGDKLQYERTLIINQ 480

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLV 349
           FK+  + L++A+D+A+RGLDI ++  V N+  P  A+ YIHRIGRTGRAG   G A++LV
Sbjct: 481 FKQ-HVHLLIATDIASRGLDIKEIRTVINYFPPKDADIYIHRIGRTGRAGNCDGVAYSLV 539

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            K+D K    + + IE     L G +     P E  +IA  +   K + + +K  G+D  
Sbjct: 540 QKQDWKFAIMLVRSIE-----LAGQIV----PQELEEIANLDDHFKMDRM-KKKMGYDYA 589

Query: 410 KKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMP 450
           +   +S+  H  LK            Q N    LGF    P
Sbjct: 590 RGKDASKILHQALKR-----------QTNSKAGLGFDEQEP 619


>gi|103487316|ref|YP_616877.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
 gi|98977393|gb|ABF53544.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
          Length = 610

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 123/371 (33%), Positives = 198/371 (53%), Gaps = 13/371 (3%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEKG 66
           LSP +  A+   GY   TP+Q++      +  D+   AQTG+GKT +F L M   ++E G
Sbjct: 6   LSPVLADALAARGYEALTPVQLQVTEAEAKGRDLLVSAQTGSGKTVAFGLAMADELIEDG 65

Query: 67  RAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
           R      P  LI+ PTRELA QV+             +A  +GG+    + + L +G  +
Sbjct: 66  RLPFATSPLALIVAPTRELALQVSRELGWLYARAGARIATCVGGMDASKERRALNQGVQI 125

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           ++ TPGR+ DH  RG L +  + + V+DEAD MLDMGF   ++ I    P TR+TLLFSA
Sbjct: 126 VVGTPGRLRDHLERGALDLAALRVAVLDEADEMLDMGFRDDLEEILDATPETRRTLLFSA 185

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA----TYAQYSKKCALLQQLLQS 241
           T+   + ++++ + ++  RI     S+  E   H  +A    T A    + A++  LL+ 
Sbjct: 186 TIPKPIVQLAKRYQRDALRI-----STVGEDRGHGDIAYQAVTVAPADIEGAVV-NLLRL 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D  +  ++FC  + NV  L  SL ++GF+  A+ G   Q  R + L   ++   ++ VA
Sbjct: 240 HDA-ETAMLFCATRDNVRRLHASLVERGFAAVALSGEHSQNERNQALQALRDRRAKVCVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+P +  V + ++P  AE   HR GRTGRAG+ G A  +V     + +D + 
Sbjct: 299 TDVAARGIDLPTLSLVIHVEIPRDAEALQHRSGRTGRAGKKGTAVIIVPYPRRRRVDGML 358

Query: 362 KLIEKKVDWLN 372
           +      +W++
Sbjct: 359 RGARINAEWMD 369


>gi|163916596|gb|AAI57756.1| LOC734085 protein [Xenopus (Silurana) tropicalis]
          Length = 758

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 202/376 (53%), Gaps = 22/376 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+   +S   +  +   G     PIQ KT        DV   A+TGTGKT SF +P++ 
Sbjct: 180 DFSKFPISKDTIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVE 239

Query: 62  ILEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L + +   AR R PR +IL PTRELA Q+ +      K   L V    GG P++ Q   
Sbjct: 240 RLNEDQQPLARGRAPRVIILTPTRELAIQITNEIRSITKK--LKVCCFYGGTPYQQQVFS 297

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV---- 174
           ++ G D L+ TPGR+ D     +L +  ++ +V+DE D M DMGF   ++ I S+     
Sbjct: 298 IKEGFDFLVGTPGRVRDLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYKPD 357

Query: 175 -PFTRQTLLFSATMTDELQKVSENFLQNP-KRIEV--NTPSSTAETIEHCFVATYAQYSK 230
                QTLLFSAT  D +  V++ +++   ++I++  +     A T+EH  +A     S+
Sbjct: 358 PEENPQTLLFSATCPDWMYNVAKKYMKKQFEKIDLVGHRSQKAAITVEH--LAIECTRSQ 415

Query: 231 KCALLQQLLQ-SQDTMKNGIIFCNQKKNVVNL---CHSLEKQGFSVCAIHGNIDQRSRMK 286
           K A+L  ++Q    +    IIFC+ K     L   C SL++   S   +HG++ Q+ R  
Sbjct: 416 KAAVLGDIVQVYSGSHGKSIIFCDSKLEAHELATNCGSLKQ---SAKPLHGDLQQKEREV 472

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
           IL  F++G+ +++VA+++AARGLDIP+V  V  +  P  A+ Y+HR GRTGRAGR G   
Sbjct: 473 ILKGFRQGSFEVLVATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGICI 532

Query: 347 TLVAKEDIKHIDAIEK 362
           +L    +  ++  +E+
Sbjct: 533 SLYEPRERHYLRNVER 548


>gi|68490972|ref|XP_710708.1| potential nonsense-mediated decay helicase Dbp2 fragment [Candida
           albicans SC5314]
 gi|68490999|ref|XP_710694.1| potential nonsense-mediated decay helicase Dbp2 fragment [Candida
           albicans SC5314]
 gi|46431929|gb|EAK91446.1| potential nonsense-mediated decay helicase Dbp2 fragment [Candida
           albicans SC5314]
 gi|46431944|gb|EAK91460.1| potential nonsense-mediated decay helicase Dbp2 fragment [Candida
           albicans SC5314]
          Length = 443

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 112/314 (35%), Positives = 172/314 (54%), Gaps = 11/314 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F + G    V+  V D G+ KPTPIQ +  P+ L   D+ GIA TG+GKT S+ LP +  
Sbjct: 129 FDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVH 188

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 L+ G      P  L+L PTRELA Q+     K+GK+  +    + GG P   Q 
Sbjct: 189 INAQPQLQYGDG----PIVLVLAPTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQI 244

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG ++ I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +  
Sbjct: 245 RDLARGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 304

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E+Q+++ ++L +P ++ + +    A       V    ++SK+  L++
Sbjct: 305 DRQTLMWSATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVK 364

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L  + +   N I +F + K+    +   L   G+   AIHG+ +Q  R  +L  F++G 
Sbjct: 365 HLESALNEKDNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGK 424

Query: 296 IQLMVASDLAARGL 309
             +MVA+D+AARG+
Sbjct: 425 TSIMVATDVAARGI 438


>gi|289619838|emb|CBI54121.1| unnamed protein product [Sordaria macrospora]
          Length = 825

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/375 (32%), Positives = 208/375 (55%), Gaps = 16/375 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DL L       +  + +   T +Q   IPL L+  D+ G A+TG+GKT +F++P+L 
Sbjct: 60  NFTDLPLCEPTASGLRASHFEIMTDVQKAAIPLALKGQDILGAARTGSGKTLAFLVPVLE 119

Query: 62  ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L + R   +     LI+ PTRELA Q+ +   K G+N++ +  L+IGG   + + ++L 
Sbjct: 120 KLYRARWTELDGLGALIISPTRELAVQIFEVLRKIGRNHSFSAGLVIGGKSLKEEAERLS 179

Query: 121 RGADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           R  ++L+CTPGR+L H ++     ++N++ILV+DEADR++DMGF   +  +   +P +RQ
Sbjct: 180 R-MNILVCTPGRMLQHLDQTAGFDVDNLQILVLDEADRIMDMGFQQAVDALVEHLPKSRQ 238

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI---EHCFVATYAQYSKKCALLQ 236
           TLLFSAT +  +  ++   L++P+ + V+  +++A  +   +H  V    +   K   L 
Sbjct: 239 TLLFSATQSKRVSDLARLSLKDPEYVSVHEAAASATPVNLQQHYIVTPLPE---KLDTLW 295

Query: 237 QLLQSQDTMKNGII-FCNQKKNVVNLCHSLEKQ--GFSVCAIHGNIDQRSRMKILSNFKE 293
             L++   +K+ II F +  K V  +  S ++   G  +  +HG   Q +R++I + F  
Sbjct: 296 GFLRT--NLKSKIIVFLSSGKQVRFVYESFKRMQPGIPLLHLHGRQKQIARLEITNRFTS 353

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
                + A+D+ ARG+D P V  V   D P  A+ YIHR+GRT R    G+A   +   +
Sbjct: 354 AKYSCLFATDVVARGVDFPAVDWVIQADCPEDADTYIHRVGRTARYESKGRAVLFLDPSE 413

Query: 354 IKHIDAIEKLIEKKV 368
            +    I++L +KKV
Sbjct: 414 EEGF--IKRLEQKKV 426


>gi|1438969|gb|AAB04136.1| RNA helicase [Caenorhabditis elegans]
          Length = 763

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 134/402 (33%), Positives = 207/402 (51%), Gaps = 38/402 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  L+  +   V  AGY K TPIQ   +PLV Q +D+   AQTG+GKTA+F+LP++T 
Sbjct: 343 FAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMTR 402

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           L         G      PR +IL PTRELA Q+ +   K+     + +  + GG+     
Sbjct: 403 LIDDNNLNTAGEGGC-YPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYN 461

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD-MGFIPYIQNITSLV 174
             ++E+GA +++ T GRI      G + ++     V+DEADRM+D MGF   I+ I +  
Sbjct: 462 KGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYD 521

Query: 175 PF----TRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETI----EHCFVATY 225
                  RQTL+FSAT  D +Q+ +  FL +N   I ++   +  + +    E C     
Sbjct: 522 SMPRKENRQTLMFSATFPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFERC----- 576

Query: 226 AQYSKKCALLQQL---LQSQDTMKNG-------IIFCNQKKNVVNLCHSLEKQGFSVCAI 275
            +  KK  LL+ L   + S  T K+        ++F +Q+     L   L         I
Sbjct: 577 ERSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAITI 636

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG  +QR R + L  F+ G+  +++A+ +A RGLDI  V HV N+D+P+  ++YIHRIGR
Sbjct: 637 HGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGR 696

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV----DWLNG 373
           TGR G  G+A + ++ ED   +  +  ++        DW+ G
Sbjct: 697 TGRVGNSGRATSFIS-EDCSLLSELVGVLADAQQIVPDWMQG 737


>gi|17507877|ref|NP_491963.1| Germ-Line Helicase family member (glh-1) [Caenorhabditis elegans]
 gi|51338772|sp|P34689|GLH1_CAEEL RecName: Full=ATP-dependent RNA helicase glh-1; AltName:
           Full=Germline helicase 1
 gi|14625283|gb|AAB52901.2| Germ line helicase protein 1, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 763

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 134/402 (33%), Positives = 207/402 (51%), Gaps = 38/402 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  L+  +   V  AGY K TPIQ   +PLV Q +D+   AQTG+GKTA+F+LP++T 
Sbjct: 343 FAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMTR 402

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           L         G      PR +IL PTRELA Q+ +   K+     + +  + GG+     
Sbjct: 403 LIDDNNLNTAGEGGC-YPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYN 461

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD-MGFIPYIQNITSLV 174
             ++E+GA +++ T GRI      G + ++     V+DEADRM+D MGF   I+ I +  
Sbjct: 462 KGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYD 521

Query: 175 PF----TRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETI----EHCFVATY 225
                  RQTL+FSAT  D +Q+ +  FL +N   I ++   +  + +    E C     
Sbjct: 522 SMPRKENRQTLMFSATFPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFERC----- 576

Query: 226 AQYSKKCALLQQL---LQSQDTMKNG-------IIFCNQKKNVVNLCHSLEKQGFSVCAI 275
            +  KK  LL+ L   + S  T K+        ++F +Q+     L   L         I
Sbjct: 577 ERSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAITI 636

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG  +QR R + L  F+ G+  +++A+ +A RGLDI  V HV N+D+P+  ++YIHRIGR
Sbjct: 637 HGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGR 696

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV----DWLNG 373
           TGR G  G+A + ++ ED   +  +  ++        DW+ G
Sbjct: 697 TGRVGNSGRATSFIS-EDCSLLSELVGVLADAQQIVPDWMQG 737


>gi|320036344|gb|EFW18283.1| ATP-dependent RNA helicase dbp4 [Coccidioides posadasii str.
           Silveira]
          Length = 805

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/392 (31%), Positives = 216/392 (55%), Gaps = 26/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F++L LS   +  +  + +   T IQ + +P  ++  D+ G A+TG+GKT +F++P+L  
Sbjct: 50  FSELPLSDATLQGLSASHFKTLTDIQSRAVPHAIKGRDILGAAKTGSGKTLAFLVPVLEN 109

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  K          LIL PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L R
Sbjct: 110 LYRKQWTEYDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLQEEQERLGR 169

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++      ++I++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 170 -MNILVCTPGRMLQHMDQTAAFDTDHIQMLVLDEADRIMDMGFQSTVDAIVEHLPKERQT 228

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYSKKCALLQQL 238
           +LFSAT T ++  ++   L++P+ I V+  +S+A   +++  +V T     +K   L   
Sbjct: 229 MLFSATQTKKVSDLARLSLRDPEYISVHEAASSATPASLQQHYVVT--PLPEKLDTLWSF 286

Query: 239 LQSQDTMKNGI-IFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++  +T+K+ I +F +  K V  +  +    + G  +  +HG   Q +R+ I S F    
Sbjct: 287 IR--NTLKSKILVFFSSSKQVRFVYEAFRHMQPGIPLLHLHGRQKQSARIDITSKFSRAK 344

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
              + ++D+AARGLD P V  V   D P  A+ YIHR+GRT R  R G+A   +   + +
Sbjct: 345 YSCLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEE 404

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
            +  +++L +KK+            P+E+I+I
Sbjct: 405 GM--LKRLEQKKI------------PIERINI 422


>gi|307708913|ref|ZP_07645373.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
 gi|307620249|gb|EFN99365.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
          Length = 447

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/367 (34%), Positives = 193/367 (52%), Gaps = 11/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALEELKFTTPTEVQDKLIPIVLVGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   + ++ V ++  +GG     Q +K
Sbjct: 61  QQLDEASDSVQ---AVITAPSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQ 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +  + +   L 
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQLT 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           QL+Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K    
Sbjct: 238 QLMQPYLAM----IFVNTKTRADELHAYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDF 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   
Sbjct: 294 EYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSD 353

Query: 357 IDAIEKL 363
           I  +EKL
Sbjct: 354 IRELEKL 360


>gi|227820653|ref|YP_002824623.1| DEAD/DEAH box protein, ATP-dependent RNA helicase [Sinorhizobium
           fredii NGR234]
 gi|227339652|gb|ACP23870.1| DEAD/DEAH box protein, ATP-dependent RNA helicase [Sinorhizobium
           fredii NGR234]
          Length = 633

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 193/346 (55%), Gaps = 6/346 (1%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-LTILEK 65
           G++P +  A+   GY   TP+Q   +   L+  D    AQTG+GKT +F L +  T+L  
Sbjct: 6   GIAPAIAEALAKRGYNTLTPVQQAMLDPALEGADALVSAQTGSGKTVAFGLALGPTLLGP 65

Query: 66  GRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            R       P  L++ PTRELA QV    E   +    T+A  +GG+   ++ + LERGA
Sbjct: 66  ARQFDSPGAPLALVIAPTRELALQVKRELEWLYEITGATIASCVGGMDIRSERRALERGA 125

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            +++ TPGR+ DH  R  L ++ +  +V+DEAD MLD+GF   ++ I    P  R+TL+F
Sbjct: 126 HIVVGTPGRLCDHIRRDSLDISALRAIVLDEADEMLDLGFREDLEFILEASPTERRTLMF 185

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT+   +  +++N+ ++  RI V +       IE+  +   A   ++ A++  +L+  D
Sbjct: 186 SATVPRSIATLAKNYQRDAVRIGVASEQKQHGDIEYRSL-LVAPSDRENAII-NVLRYYD 243

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +N I+FC+ +  V +L      +GFSV A+ G + Q  R   L   ++G  ++ +A+D
Sbjct: 244 A-RNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQNERNHALQAMRDGRARVCIATD 302

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +AARG+D+P +  V + D+P   +  +HR GRTGRAG+ G +  +V
Sbjct: 303 VAARGIDLPGLELVIHADLPTNPDTLLHRSGRTGRAGQKGVSALIV 348


>gi|123440563|ref|YP_001004557.1| putative DEAD-box helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087524|emb|CAL10305.1| putative DEAD-box helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 358

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 112/300 (37%), Positives = 177/300 (59%), Gaps = 6/300 (2%)

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
           E+GR +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K LE G 
Sbjct: 7   EEGR-QTNQPRALIMAPTRELAVQIHSDAESLSQVTGLKLGLAYGGDGYDKQLKVLESGV 65

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQTL 181
           D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P    R  +
Sbjct: 66  DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLNM 125

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT++  +++++   + N + +EV     T   I+      Y    +K  LLQ L++ 
Sbjct: 126 LFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELF--YPSNEEKMRLLQTLIE- 182

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++     IIF N K     +   L   G  V  + G++ Q+ R++IL +F +G + ++VA
Sbjct: 183 EEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVA 242

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++ AIE
Sbjct: 243 TDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNLPAIE 302


>gi|326498121|dbj|BAJ94923.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326527983|dbj|BAJ89043.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 495

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 114/361 (31%), Positives = 197/361 (54%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 122 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 181

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++ +  +++   +IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 182 KIDQDKNAIQV---VILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRLYQ 238

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LD   +G  ++ +  +L++DEAD++L   F P ++ +   +P +RQ L
Sbjct: 239 PVHLIVGTPGRVLDLTKKGICILKDCSMLIMDEADKLLSPEFQPSVEQLIRYLPSSRQIL 298

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++   + +L  P  I +     T + I   +   + +  +K   L  L  S
Sbjct: 299 MFSATFPVTVKAFKDKYLPKPYVINL-MDELTLKGITQFY--AFVEERQKVHCLNTLF-S 354

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 355 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 414

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 415 TDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 474

Query: 362 K 362
           +
Sbjct: 475 Q 475


>gi|322376932|ref|ZP_08051425.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           M334]
 gi|321282739|gb|EFX59746.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           M334]
          Length = 447

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/367 (34%), Positives = 191/367 (52%), Gaps = 11/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKKYISEALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   +  + V ++  +GG     Q  K
Sbjct: 61  QQLDETSDSVQ---AVITAPSRELATQIYQAARQIAAHSEVEVRVVNYVGGTDKARQIDK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQ 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +  + +   L 
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQLT 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           QL+Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K    
Sbjct: 238 QLMQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDF 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   
Sbjct: 294 EYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSD 353

Query: 357 IDAIEKL 363
           I  +EKL
Sbjct: 354 IRELEKL 360


>gi|221482850|gb|EEE21181.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
          Length = 983

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 138/420 (32%), Positives = 228/420 (54%), Gaps = 31/420 (7%)

Query: 3   FADLGLS-PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F  LGLS P  + A+   G+ +PTPIQ + IPL+L+  D   +++TG+GKTA F+LP+L 
Sbjct: 26  FETLGLSTPTSLAAIKGLGFSQPTPIQRRAIPLLLKGKDCILMSRTGSGKTACFLLPLLD 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +  + V + R +++ PTREL AQ+     K   + +L V  L+GG  +  Q   L R
Sbjct: 86  LLGEHSSVVGV-RAVLIAPTRELVAQIHRVCSKLLHSSSLRVCCLLGGENYSKQFLALSR 144

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DVL+ T GR     +   L ++    LV+DEADR+ ++G+   +  + + +P ++Q +
Sbjct: 145 NPDVLLTTVGRGSQLIHDKVLSLSAARFLVLDEADRIFELGWKEQLSMLFAALPASKQVV 204

Query: 182 LFSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           L SAT+  +L   +   L++P+  R+E     S    ++  FV    +      LL+Q +
Sbjct: 205 LVSATLPGDLVNFARLGLRDPEFVRLEKECTLSDDLHMQFLFVRAAQKVPTLLFLLKQSI 264

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q ++ +   ++F + +     L    E+  F    I+G +DQ  R++ L+ FK+G I ++
Sbjct: 265 QKKEQV---LVFASTRHQATFLQCFCERLAFPSAVIYGAMDQTERVQTLAAFKKGKISVL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+AARGLDIP +  V NFD P+ A+ ++HR+GRT RAGR G AF+LV  +D+ +  A
Sbjct: 322 LVTDVAARGLDIPHLPSVINFDFPSSAKLFVHRVGRTARAGRSGTAFSLVTGDDLPY--A 379

Query: 360 IEKLIEKKVDWLNGDLSSLNPPL--------------EKIDIAQHNHARKNNPIPQKSTG 405
           +E +      +L G    L PP               E +D+ +   A K+   P  S+G
Sbjct: 380 VELM-----SFLGG---RLVPPFSFSSEADDTRQEETEDVDLPKPEDASKDTVSPSPSSG 431


>gi|237840673|ref|XP_002369634.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211967298|gb|EEB02494.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|221503359|gb|EEE29057.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 983

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 138/420 (32%), Positives = 228/420 (54%), Gaps = 31/420 (7%)

Query: 3   FADLGLS-PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F  LGLS P  + A+   G+ +PTPIQ + IPL+L+  D   +++TG+GKTA F+LP+L 
Sbjct: 26  FETLGLSTPTSLAAIKGLGFSQPTPIQRRAIPLLLKGKDCILMSRTGSGKTACFLLPLLD 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +  + V + R +++ PTREL AQ+     K   + +L V  L+GG  +  Q   L R
Sbjct: 86  LLGEHSSVVGV-RAVLIAPTRELVAQIHRVCSKLLHSSSLRVCCLLGGENYSKQFLALSR 144

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DVL+ T GR     +   L ++    LV+DEADR+ ++G+   +  + + +P ++Q +
Sbjct: 145 NPDVLLTTVGRGSQLIHDKVLSLSAARFLVLDEADRIFELGWKEQLSMLFAALPASKQVV 204

Query: 182 LFSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           L SAT+  +L   +   L++P+  R+E     S    ++  FV    +      LL+Q +
Sbjct: 205 LVSATLPGDLVNFARLGLRDPEFVRLEKECTLSDDLHMQFLFVRAAQKVPTLLFLLKQSI 264

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q ++ +   ++F + +     L    E+  F    I+G +DQ  R++ L+ FK+G I ++
Sbjct: 265 QKKEQV---LVFASTRHQATFLQCFCERLAFPSAVIYGAMDQTERVQTLAAFKKGKISVL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+AARGLDIP +  V NFD P+ A+ ++HR+GRT RAGR G AF+LV  +D+ +  A
Sbjct: 322 LVTDVAARGLDIPHLPSVINFDFPSSAKLFVHRVGRTARAGRSGTAFSLVTGDDLPY--A 379

Query: 360 IEKLIEKKVDWLNGDLSSLNPPL--------------EKIDIAQHNHARKNNPIPQKSTG 405
           +E +      +L G    L PP               E +D+ +   A K+   P  S+G
Sbjct: 380 VELM-----SFLGG---RLVPPFSFSSEADDTRQEEAEDVDLPKPEDASKDTVSPSPSSG 431


>gi|66812114|ref|XP_640236.1| hypothetical protein DDB_G0282741 [Dictyostelium discoideum AX4]
 gi|74897113|sp|Q54S03|DDX18_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx18; AltName:
           Full=DEAD box protein 18
 gi|60468220|gb|EAL66230.1| hypothetical protein DDB_G0282741 [Dictyostelium discoideum AX4]
          Length = 602

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 131/410 (31%), Positives = 227/410 (55%), Gaps = 24/410 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F++L +      ++ + G+ K TPIQ K+I  +L+  D+ G A+TG+GKT +F++P +
Sbjct: 119 IEFSNLPIEENTKKSIEEMGFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLIPAI 178

Query: 61  TILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L K   + R     +I+ PTRELA Q+     +  K +  T  ++IGG   + + ++L
Sbjct: 179 EVLVKSNFKPRNGTGVIIISPTRELALQIYGVARELMKYHTQTHGIVIGGASKKPEEERL 238

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           E+G ++L+ TPGR+LDH    K  +  N++ L+IDEADR+L++GF   +  I   VP TR
Sbjct: 239 EKGVNLLVATPGRLLDHLQNTKGFITKNLKCLIIDEADRILEVGFEEEMHQIIKKVPKTR 298

Query: 179 QTLLFSATMT---DELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCA 233
           QT+LFSAT T   D++ KVS N   +P  + V+     ST E +E  +V   ++  ++  
Sbjct: 299 QTMLFSATQTRKVDDIAKVSLN--NSPVYVGVDDEREISTVEGLEQGYVVCPSE--RRFL 354

Query: 234 LLQQLLQSQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           LL   L+ ++  K  I+F   CN  K    L + ++     V  +HG   Q+ R      
Sbjct: 355 LLYTFLK-KNLSKKIIVFLSSCNAVKYTAELLNYID---IPVLELHGRQKQQKRTNTFYE 410

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLV 349
           F      +++ +D+AARGLDIP V  +  +D P+  + YIHR+GRT R  G+ G+A   +
Sbjct: 411 FVNAEKGILICTDVAARGLDIPSVDWIIQYDPPDDPKEYIHRVGRTARGVGKKGRALLFL 470

Query: 350 AKEDIKHIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI---DIAQHNHAR 394
             +++  +  ++  K+   + ++    ++++   LEK+   +   +N AR
Sbjct: 471 LPKELGFLKYLKLAKVPLNEYEFPKSKIANVQDQLEKVVSQNFYLYNSAR 520


>gi|303313405|ref|XP_003066714.1| ATP-dependent RNA helicase DBP4, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240106376|gb|EER24569.1| ATP-dependent RNA helicase DBP4, putative [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 805

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/392 (31%), Positives = 216/392 (55%), Gaps = 26/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F++L LS   +  +  + +   T IQ + +P  ++  D+ G A+TG+GKT +F++P+L  
Sbjct: 50  FSELPLSDATLQGLSASHFKTLTDIQSRAVPHAIKGRDILGAAKTGSGKTLAFLVPVLEN 109

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  K          LIL PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L R
Sbjct: 110 LYRKQWTEYDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLQEEQERLGR 169

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++      ++I++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 170 -MNILVCTPGRMLQHMDQTAAFDTDHIQMLVLDEADRIMDMGFQSTVDAIVEHLPKERQT 228

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYSKKCALLQQL 238
           +LFSAT T ++  ++   L++P+ I V+  +S+A   +++  +V T     +K   L   
Sbjct: 229 MLFSATQTKKVSDLARLSLRDPEYISVHEAASSATPASLQQHYVVT--PLPEKLDTLWSF 286

Query: 239 LQSQDTMKNGI-IFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++  +T+K+ I +F +  K V  +  +    + G  +  +HG   Q +R+ I S F    
Sbjct: 287 IR--NTLKSKILVFFSSSKQVRFVYEAFRHMQPGIPLLHLHGRQKQSARIDITSKFSRAK 344

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
              + ++D+AARGLD P V  V   D P  A+ YIHR+GRT R  R G+A   +   + +
Sbjct: 345 YSCLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEE 404

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
            +  +++L +KK+            P+E+I+I
Sbjct: 405 GM--LKRLEQKKI------------PIERINI 422


>gi|213409972|ref|XP_002175756.1| ATP-dependent RNA helicase Has1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212003803|gb|EEB09463.1| ATP-dependent RNA helicase Has1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 572

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/353 (35%), Positives = 199/353 (56%), Gaps = 10/353 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL LS K + A+ D GY K T +Q +TIP +L   DV G A+TG+GKT +F++P +  
Sbjct: 85  FTDLPLSEKTLNAIKDIGYEKMTEVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIET 144

Query: 63  LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   + + R     +I+ PTRELA Q+    ++  K ++ T  ++IGG    A+  KL +
Sbjct: 145 LYSLKFKPRNGTGVIIVSPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVK 204

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQ 179
           G ++L+ TPGR+LDH    K  +  N+  L+IDEADR+L++GF   ++ I  ++P   RQ
Sbjct: 205 GVNLLVATPGRLLDHLQNTKGFVFRNLRSLIIDEADRILEIGFEDEMRQIAKVLPSENRQ 264

Query: 180 TLLFSATMTDELQKVSENFLQ-NPKRIEVNT--PSSTAETIEHCFVATYAQYSKKCALLQ 236
           T+LFSAT T +++ ++   L+  P  I V+    +STA+ +E  +V    +  K+  LL 
Sbjct: 265 TMLFSATQTTKVEDLARISLRPGPLYINVDAGKDTSTADGLEQGYVVV--ESDKRFLLLF 322

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L+ ++  K  I+F +   +V  +   L      V  +HG   Q+ R      F     
Sbjct: 323 SFLK-RNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEK 381

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            +M+ +D+AARGLDIP V  +  +D P+   +YIHR+GRT R G  GK  +L+
Sbjct: 382 GIMLCTDVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTAR-GAKGKGRSLI 433


>gi|70726359|ref|YP_253273.1| hypothetical protein SH1358 [Staphylococcus haemolyticus JCSC1435]
 gi|68447083|dbj|BAE04667.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 448

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 133/400 (33%), Positives = 206/400 (51%), Gaps = 26/400 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L  K++ A+ D  + KPT IQ + IP + +  ++ G +QTGTGK+ +F+LP++  
Sbjct: 6   FELFNLDSKLIEAIKDLKFDKPTEIQNRIIPRIKKGVNLIGQSQTGTGKSHAFLLPLI-- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +K     + P+++++ PTRELA Q+   A++   + +   + V+L IGG   E   ++ 
Sbjct: 64  -DKIDVENKEPQSIVVAPTRELAQQLYQAANHLATFKQG--IKVSLFIGGTDIEKDRQRT 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++I TP RI D    G L  +    L++DEAD M+D+G I  +  I S +     
Sbjct: 121 SNQPQLVIGTPTRINDLAQSGHLHAHLASYLIVDEADLMIDLGLIEDVDLIASRLDENSH 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +FSAT+   LQ     +L NP+ +EV++ S   + IE   + T     K    + + L
Sbjct: 181 IAVFSATIPKSLQPFLNKYLSNPEYVEVDSKSQNKKNIEFYLIPT-----KGTEKVDKTL 235

Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           Q  D +     I+FCN + N   L +SL   G  V  IHG +  R R + +   +    Q
Sbjct: 236 QLIDILNPYLCIVFCNSRDNADELANSLNAAGIKVGMIHGGLTPRERKQQMKRIRNLEFQ 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++ASDLA+RG+DI  V HV NFDVP   + + HR+GRTGR    G A TL + ++   I
Sbjct: 296 FVIASDLASRGIDIEGVSHVINFDVPKDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHLI 355

Query: 358 DAIEKLIEKKVDWLNGDL--SSLNPPLEKIDIAQHNHARK 395
             IE   +K   + N D+  + L P      I  HN  RK
Sbjct: 356 TLIE---DKGYHFENVDVKNNELTP------IKAHNTRRK 386


>gi|148232012|ref|NP_001083721.1| ATP-dependent RNA helicase ddx6 [Xenopus laevis]
 gi|1044938|emb|CAA63149.1| RNA helicase p54 [Xenopus laevis]
          Length = 481

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 118/362 (32%), Positives = 194/362 (53%), Gaps = 8/362 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGKT ++++P+L 
Sbjct: 96  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKTGAYLIPLLE 155

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L+  +  ++    +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 156 RLDLKKDCIQ---AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 212

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++I+++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 213 DTVHVVIATPGRILDLIKKGVAKVDHIQMIVLDEADKLLSQDFMQIMEDIIMTLPKNRQI 272

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK     LQ P  I +    +     ++     Y    +K   L  L  
Sbjct: 273 LLYSATFPLSVQKFMTLHLQKPYEINLMEELTLKGVTQY---YAYVTERQKVHCLNTLF- 328

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 329 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 388

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 389 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 448

Query: 361 EK 362
           E+
Sbjct: 449 EE 450


>gi|162146723|ref|YP_001601182.1| cold-shock DEAD box protein A [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161785298|emb|CAP54844.1| putative cold-shock DEAD box protein A [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 596

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 115/359 (32%), Positives = 195/359 (54%), Gaps = 7/359 (1%)

Query: 16  VLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR---VR 71
            LDA GY +PTP+Q   + +     D+   AQTG+GKT +F L M   L  G  R     
Sbjct: 13  ALDARGYEEPTPVQKAVLDVAADGRDLLVSAQTGSGKTVAFGLAMADTLLGGAERFGPAG 72

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
            P  +I+ PTRELA QV              +   IGG+    + + LE GA +++ TPG
Sbjct: 73  APLAVIIAPTRELAMQVQRELSWLYAPAGARIVSCIGGMDARREARALEIGAHIVVGTPG 132

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+ DH +RG+L+++ + ++V+DEAD MLD+GF   +Q +   +P TR+TLLFSAT+  ++
Sbjct: 133 RLCDHQSRGRLVLSELRVVVLDEADEMLDLGFRDELQQLLDAMPDTRRTLLFSATIAKDI 192

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
             ++  + ++  RI  +T S   +  +  + A  A   +    +  +L+  D+    ++F
Sbjct: 193 ATLARRYQRDALRI--DTLSGARQHADITYRAVMADPREIIPAVVNILRFTDS-PTAMVF 249

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           C  ++ V ++  +L ++GFS  A+ G + Q  R + + + + G  ++ VA+D+AARG+DI
Sbjct: 250 CATRELVRHMQGALLERGFSSVALSGELGQSERTRAIESLRTGQARVCVATDVAARGIDI 309

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           P +  V +  +P  +   +HR GRTGRAGR G    +V     +  + +  + +   +W
Sbjct: 310 PALSLVVHASLPTDSATLLHRSGRTGRAGRKGVCALIVPVSMRRRAERLLTMAKVSAEW 368


>gi|85091492|ref|XP_958928.1| ATP-dependent RNA helicase DDX18 [Neurospora crassa OR74A]
 gi|74696328|sp|Q7S2N9|HAS1_NEUCR RecName: Full=ATP-dependent RNA helicase has-1
 gi|28920320|gb|EAA29692.1| ATP-dependent RNA helicase DDX18 [Neurospora crassa OR74A]
          Length = 578

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 130/359 (36%), Positives = 201/359 (55%), Gaps = 21/359 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF++L LS K + A+ + G+ K T IQ + IP +L   DV G A+TG+GKT +F++P + 
Sbjct: 108 DFSELNLSDKTMKAIAEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 167

Query: 62  ILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + R     +++ PTRELA Q+     +  KN++ T  ++IGG    A+ +KL 
Sbjct: 168 MLSSLRFKPRNGTGAIVVTPTRELALQIFGVARELMKNHSQTYGVVIGGANRRAEAEKLG 227

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQ 179
           +G ++LI TPGR+LDH      +  N+  L+IDEADR+L++GF   ++ I  ++P   RQ
Sbjct: 228 KGVNLLIATPGRLLDHLQNTPFVFKNMRSLIIDEADRILEIGFEDEMRQIIKILPKEDRQ 287

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPS----STAETIEHCFVATYAQYSKKCALL 235
           T+LFSAT T +++ ++   L+ P  + VN       ST E ++  +V   A   K+  LL
Sbjct: 288 TMLFSATQTTKVEDLARISLR-PGPLYVNVDEEKQFSTVEGLDQGYVVVDA--DKRFLLL 344

Query: 236 QQLLQSQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF-- 291
              L+     K  + F  CN  K    L   ++ Q   V  +HG   Q+ R      F  
Sbjct: 345 FSFLKKMQKKKVIVFFSSCNSVKYYSELLQYIDLQ---VLDLHGKQKQQKRTNTFFEFCN 401

Query: 292 -KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            K+GT   ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R G + K  +L+
Sbjct: 402 AKQGT---LICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTAR-GNNTKGRSLL 456


>gi|323447210|gb|EGB03146.1| hypothetical protein AURANDRAFT_39444 [Aureococcus anophagefferens]
          Length = 418

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/360 (32%), Positives = 186/360 (51%), Gaps = 7/360 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+P+Q + IP++LQ  +V   A+ GTGKTA+F++P   
Sbjct: 45  EFEDYFLKRELLMGIFEKGFERPSPVQERAIPIILQNRNVLARAKNGTGKTAAFIIP--- 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            LEK     +  + LIL PTRELA Q +    + GK+  +   +  GG   +    +L +
Sbjct: 102 CLEKTDPSKKFIQVLILIPTRELALQTSAVVRELGKHMKVECMVSTGGTSLKDDIMRLYK 161

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL+ TPGRILD   +G   +     +++DEAD++L   F P ++ +       RQ  
Sbjct: 162 PVHVLVGTPGRILDLSEKGVAALGRCHTVIMDEADKLLSPEFEPLLEKLVHHCSPERQIC 221

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++   E F+ NP  I +     T + I   +   + +  +K   L  L   
Sbjct: 222 LFSATFPVTVKNFKEKFIHNPYEINL-MDDLTLKGITQFYA--FVEERQKVHCLHTLFTK 278

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + +   +IFCN    V  L   + + G+S   IH  + Q  R ++   F+ G+ + +V+
Sbjct: 279 LE-INQSVIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGSTRHLVS 337

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR GR G  G A  L+  +D  ++  IE
Sbjct: 338 SDLFTRGIDIQSVNVVINFDFPKTSETYLHRIGRAGRFGHLGLAINLITFDDRFNLYRIE 397


>gi|154279240|ref|XP_001540433.1| eukaryotic initiation factor 4A [Ajellomyces capsulatus NAm1]
 gi|160395527|sp|A6R3R5|IF4A_AJECN RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|150412376|gb|EDN07763.1| eukaryotic initiation factor 4A [Ajellomyces capsulatus NAm1]
          Length = 385

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 115/330 (34%), Positives = 186/330 (56%), Gaps = 5/330 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L  +++  V   G+ +P+ IQ + I  V++  DV   AQ+GTGKTA+F    ++ 
Sbjct: 27  FDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATF---SISA 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    ++  + LIL PTRELA Q+       G   ++     IGGI      K L+ G
Sbjct: 84  LQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSIECHACIGGISVREDMKALQDG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I   +P + Q +L
Sbjct: 144 PQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSHGFTEQIYDIFQFLPQSTQVVL 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 204 LSATMPQDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG+++Q+ R  I+  F+ G+ ++++A+
Sbjct: 263 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQQQRDVIMKEFRSGSSRVLIAT 321

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           DL ARG+D+  V  V N+D+P   ENYIHR
Sbjct: 322 DLLARGIDVQQVSLVINYDLPANRENYIHR 351


>gi|51968848|dbj|BAD43116.1| unnamed protein product [Arabidopsis thaliana]
          Length = 621

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 188/370 (50%), Gaps = 21/370 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGLS +V+ A+ +     PT IQ   IP V++R  V   + TG+GKT +++LP++ 
Sbjct: 113 NFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQ 172

Query: 62  ILEKGRARV------RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           ++ +  A +      R PRT++L PTREL+ QV    +    +      L+ GG     Q
Sbjct: 173 LMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQ 232

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L    D++  TPGRIL H   G ++  +I  LV+DEAD M D GF P I+    L P
Sbjct: 233 EDSLNNAIDMVAGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKF--LAP 290

Query: 176 FTR----------QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
             +          QT+L +ATMT  +QK+ +   Q  + +  +T         H F+   
Sbjct: 291 LNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLS 350

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
               K  ALLQ L  S       ++FCN   +   + H L +   S    HG +    R+
Sbjct: 351 GGEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRV 410

Query: 286 KILSNFK--EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           + L  FK  EG    +V +DLAARGLD+ DV HV  FD P  + +Y+HR GRT R G  G
Sbjct: 411 ENLKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLHRTGRTARMGAKG 469

Query: 344 KAFTLVAKED 353
           K  +LV+++D
Sbjct: 470 KVTSLVSRKD 479


>gi|227891108|ref|ZP_04008913.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
 gi|227866982|gb|EEJ74403.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
          Length = 440

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 195/368 (52%), Gaps = 15/368 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +      +  A+ +  + +PT +Q + IP +L+   V G +QTG+GKT +F+LP+  
Sbjct: 3   NFREFNFKEYIYQALDEINFKEPTEVQARLIPTILKGKSVVGQSQTGSGKTHTFLLPIFQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKL 119
            L   +  V+    +I  P+RELA Q+ +  ++  K    N+ +   +GG   + Q +KL
Sbjct: 63  NLNAQKDEVQ---AVITTPSRELAYQIYEAAKQLAKFSPENIWIQNYVGGTDKQRQIEKL 119

Query: 120 E-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +     ++I TPGRILD      L ++N   LV+DEAD  LD+GF+     I S +P   
Sbjct: 120 KSHQPQLVIGTPGRILDLVRENALDIHNAHYLVVDEADMTLDLGFLKETDAIASTLPKDL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+     ++ NP    V      + TI++  V+T  +   K  L+  L
Sbjct: 180 QMLVFSATIPEKLRPFLRKYMYNPVIEVVANKHVISPTIDNWLVSTKGRDRNK--LIYDL 237

Query: 239 LQSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L    TM      ++F N K+    L + L  QG  V  +HG I  R R +I+   +   
Sbjct: 238 L----TMGEPYLALVFANTKERADELTNYLRSQGLKVAKVHGGIQPRQRKRIMREIQNLD 293

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            Q +VA+DLAARG+DI  V HV N D+P   E ++HR+GRTGR G  G A TL    + K
Sbjct: 294 YQFVVATDLAARGIDIEGVSHVINDDIPEDLEFFVHRVGRTGRNGMKGTAITLYEPSEEK 353

Query: 356 HIDAIEKL 363
            ID +E +
Sbjct: 354 LIDELESM 361


>gi|58259399|ref|XP_567112.1| translation initiation factor [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134107479|ref|XP_777624.1| hypothetical protein CNBA7450 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687330|sp|Q5KN60|IF4A_CRYNE RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|50260318|gb|EAL22977.1| hypothetical protein CNBA7450 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223249|gb|AAW41293.1| translation initiation factor, putative [Cryptococcus neoformans
           var. neoformans JEC21]
          Length = 401

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 196/368 (53%), Gaps = 5/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ +P+ IQ + I  ++   D    AQ+GTGKTA+F    ++
Sbjct: 29  NFDDMKLKGELLRGIYAYGFERPSAIQQRAIMPIVTGRDCIAQAQSGTGKTATF---SVS 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    V+  + L+L PTRELA Q+       G   N+     +GG        +L  
Sbjct: 86  ILQRIDTTVKKTQALVLAPTRELAQQIQKVVIALGDYLNVDCHACVGGTAVREDIARLNE 145

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D  NRG L    + +  +DEAD ML  GF   I  I  L+P   Q +
Sbjct: 146 GPHIVVGTPGRVFDMINRGALKTEAVMMFCLDEADEMLSTGFKESIYEIFQLLPGETQVV 205

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+  V++ F+++P RI V     T E I   ++    +  K   L    L  
Sbjct: 206 LLSATMAPEVLDVTKKFMRDPIRILVKKDELTLEGIRQFYINVEKEEWKLETLCD--LYE 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFC+ ++ V  L   L  + F+V A+HG++ Q  R  I+  F+ G+ ++++ 
Sbjct: 264 TVTITQAVIFCSTRRKVDWLTQQLHDRQFTVSAMHGDMKQEEREVIMKEFRSGSSRVLIT 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V+ ED   ++ IE
Sbjct: 324 TDLLARGIDVQQVSLVINYDLPSSKENYIHRIGRGGRFGRKGVAINFVSNEDKNMLEEIE 383

Query: 362 KLIEKKVD 369
                +V+
Sbjct: 384 TYYNTQVE 391


>gi|323338408|gb|EGA79633.1| Dhh1p [Saccharomyces cerevisiae Vin13]
          Length = 448

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 119/348 (34%), Positives = 183/348 (52%), Gaps = 7/348 (2%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
            + +AG+ KP+PIQ + IP+ +   D+   A+ GTGKTA+FV+P L   EK + ++   +
Sbjct: 2   GIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL---EKVKPKLNKIQ 58

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            LI+ PTRELA Q +      GK+  ++  +  GG        +L     +L+ TPGR+L
Sbjct: 59  ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVL 118

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D  +R    +++  + ++DEAD+ML   F   I+ I S +P T Q+LLFSAT    +++ 
Sbjct: 119 DLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPXTHQSLLFSATFPLTVKEF 178

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
               L  P  I +     T + I   +   + +  +K   L  L  S+  +   IIFCN 
Sbjct: 179 MVKHLHKPYEINL-MEELTLKGITQYY--AFVEERQKLHCLNTLF-SKLQINQAIIFCNS 234

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
              V  L   +   G+S    H  + Q+ R K+   F++G ++ +V SDL  RG+DI  V
Sbjct: 235 TNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAV 294

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
             V NFD P  AE Y+HRIGR+GR G  G A  L+   D  ++  IE+
Sbjct: 295 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQ 342


>gi|328783051|ref|XP_624586.2| PREDICTED: putative ATP-dependent RNA helicase me31b-like isoform 1
           [Apis mellifera]
          Length = 444

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 191/361 (52%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L  +++  + + G+ KP+PIQ  +IP+ L   D+   A+ GTGKT ++ +P   
Sbjct: 56  EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDILARAKNGTGKTGAYSIP--- 112

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LE+   R  + + L+L PTRELA Q +    +  K+  + V +  GG        ++ +
Sbjct: 113 VLEQVDPRKDVIQALVLVPTRELALQTSQICIELAKHMEIKVMVTTGGTDLRDDIMRIYQ 172

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGRILD  ++    M++ + LV+DEAD++L   F   + ++ S +P  RQ L
Sbjct: 173 SVQVIIATPGRILDLMDKNVANMDHCKTLVLDEADKLLSQDFKGMLDHVISRLPHERQIL 232

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    +++  E  L++P  I +    +     ++     + Q  +K   L  L  S
Sbjct: 233 LYSATFPLTVKQFMEKHLRDPYEINLMEELTLKGVTQY---YAFVQERQKVHCLNTLF-S 288

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   +   G+    IH  + Q  R ++  +F+ G  + +V+
Sbjct: 289 KLQITQSIIFCNSTQRVELLAKKITDLGYCCYYIHAKMAQAHRNRVFHDFRAGLCRNLVS 348

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  IE
Sbjct: 349 SDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRFNLHRIE 408

Query: 362 K 362
           +
Sbjct: 409 Q 409


>gi|115700917|ref|XP_001192557.1| PREDICTED: similar to RNA helicase p47 [Strongylocentrotus
           purpuratus]
 gi|115749264|ref|XP_788694.2| PREDICTED: similar to RNA helicase p47 [Strongylocentrotus
           purpuratus]
          Length = 538

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 120/368 (32%), Positives = 191/368 (51%), Gaps = 9/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  LS  ++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGKT ++ +P   
Sbjct: 150 EFEDYCLSRPLLMGIFEKGWEKPSPIQEESIPIALTGRDIMARAKNGTGKTGAYTIP--- 206

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEK        + L+L PTRELA Q +   ++  K+    V +  GG        +LE 
Sbjct: 207 VLEKTNTENNFIQALVLVPTRELALQTSQICKQLSKHTGHNVMVTTGGTSLRDDILRLED 266

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD   +    M+   +LV+DEAD++L   F   + +I S +P  RQ +
Sbjct: 267 PVHLVIATPGRILDLMKQSIAKMDKCSVLVLDEADKLLSKDFQNMLDDIISFLPQDRQIM 326

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+SAT    ++   + +L   K  E+N     T + I   +   + +  +K   L  L  
Sbjct: 327 LYSATFPITVKNFMDRYL--TKAYEINLMQELTLKGITQYYA--FVEEKQKVHCLNTLF- 381

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 382 SKLQINQAIIFCNTTQRVELLAKKITELGYSCYYIHSRMQQEHRNRVFHDFRNGACRNLV 441

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  ++  +D   +  I
Sbjct: 442 CTDLFTRGIDIQSVNVVINFDFPRVSETYLHRIGRSGRYGHMGLAINMITHDDRVPMYVI 501

Query: 361 EKLIEKKV 368
           EK +  K+
Sbjct: 502 EKELSTKI 509


>gi|299890798|ref|NP_001177749.1| probable ATP-dependent RNA helicase DDX59 isoform 1 [Rattus
           norvegicus]
 gi|149058502|gb|EDM09659.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Rattus norvegicus]
          Length = 619

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 194/355 (54%), Gaps = 14/355 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF   G    +   +  +GY  PTPIQ++ IP+ L   D+   A TG+GKTA+F+LP++
Sbjct: 203 IDFEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVI 262

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
               +     + P  LIL PTRELA Q+    ++  +    +   LL+GG+P   Q  +L
Sbjct: 263 I---RALPEDKTPSALILTPTRELAIQIERQAKELMRGLPRMKTVLLVGGLPLPPQLYRL 319

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   V+I TPGR+LD   +  + ++ I+I+V+DEAD ML MGF   + ++    P   Q
Sbjct: 320 QQHVKVVIATPGRLLDIIEQSSVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPSDCQ 379

Query: 180 TLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T+L SAT+ D + ++++  L NP RI   + N P S+   I       + +   K   L 
Sbjct: 380 TVLVSATIPDSIDQLADQLLHNPVRIVTGDKNLPCSSVRQI-----ILWVEDPAKKKKLF 434

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEK-QGFSVCAIHGNIDQRSRMKILSNFKEG 294
           ++L  Q   K  + +F + K     L  +++K  G S  +IH    Q  R +IL    EG
Sbjct: 435 EILNDQKLFKPPVLVFVDCKLGADLLSEAVQKITGLSSTSIHSEKSQVERREILKGLLEG 494

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
             +++V++ +  RGLD+ +V  V NFD+P+  + Y+H++GR GR G++G A T +
Sbjct: 495 DYEVVVSTGILGRGLDLVNVKLVVNFDMPSSLDEYVHQVGRVGRLGQNGTAITFI 549


>gi|297243779|ref|ZP_06927709.1| ATP-dependent RNA helicase [Gardnerella vaginalis AMD]
 gi|296888200|gb|EFH26942.1| ATP-dependent RNA helicase [Gardnerella vaginalis AMD]
          Length = 642

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 121/363 (33%), Positives = 188/363 (51%), Gaps = 22/363 (6%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA LG+ P+ +  VL A G     PIQ  T+P  LQ  ++ G  +TG+GKT +F +P++ 
Sbjct: 171 FAQLGV-PEPLVEVLRADGKTTAFPIQQATLPDSLQGANILGRGRTGSGKTLAFSIPLVA 229

Query: 62  IL----------EKGR-----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
            L          +K R     + +  PR +IL PTREL  Q+ D        Y +    +
Sbjct: 230 RLAENFVDLIHSDKNRKSRESSDIPAPRAIILAPTRELVHQIDDVIAPLAAAYGMCTVTV 289

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG+ ++ Q  +L++GA +++  PGR+ D   +G L +  + + V+DEAD M DMGF+P 
Sbjct: 290 YGGVRYQRQVSQLKQGAQIVLACPGRLEDLLRQGALTLEKVMVSVLDEADEMADMGFLPA 349

Query: 167 IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
           +  +   V    Q +LFSAT+  ++  + E FL N     V+      +T+ H   A  A
Sbjct: 350 VTRLLEQVAPDGQRMLFSATLDRQVSTLVERFLPNAVVHAVDDADCQVDTMTHHIFAVSA 409

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
               K  +L++L   +   K  I F   K    N+     +QG     + GN+ Q  R +
Sbjct: 410 --GDKYEVLRKLASGK---KRSIFFTRTKYQAKNMAKKFVQQGIPAVDLQGNLSQNQRDR 464

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L+ F EG ++++VA+D+AARG+DI DV  V   + P   ++++HR GRT RAG  G   
Sbjct: 465 HLAVFAEGLVRVLVATDVAARGIDISDVALVVQTEPPEDPKSFLHRSGRTARAGEEGDVV 524

Query: 347 TLV 349
           TLV
Sbjct: 525 TLV 527


>gi|148997163|ref|ZP_01824817.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|168575420|ref|ZP_02721356.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           MLV-016]
 gi|307067364|ref|YP_003876330.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           AP200]
 gi|147756863|gb|EDK63903.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|183578611|gb|EDT99139.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           MLV-016]
 gi|306408901|gb|ADM84328.1| Superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           AP200]
          Length = 447

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 193/368 (52%), Gaps = 13/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   + ++ V ++  +GG     Q +K
Sbjct: 61  QQLDEASDSVQ---AVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ- 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T   + K   + Q 
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKG-HDKNAQIYQL 236

Query: 237 -QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            QL+Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  +   
Sbjct: 237 TQLMQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLD 292

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D  
Sbjct: 293 FEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDS 352

Query: 356 HIDAIEKL 363
            I  +EKL
Sbjct: 353 DIRELEKL 360


>gi|290543446|ref|NP_001166415.1| probable ATP-dependent RNA helicase DDX6 [Cavia porcellus]
 gi|81907597|sp|Q9WTM2|DDX6_CAVPO RecName: Full=Probable ATP-dependent RNA helicase DDX6; AltName:
           Full=DEAD box protein 6; AltName: Full=Oncogene RCK
           homolog
 gi|4760645|dbj|BAA77391.1| DEAD box protein [Cavia porcellus]
          Length = 472

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 193/362 (53%), Gaps = 8/362 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 86  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALTGRDILARAKNGTGKSGAYLIPLLE 145

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L+  +  ++    +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 146 RLDLKKDNIQ---AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 202

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 203 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 262

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK   + LQ P  I +    +     ++     Y    +K   L  L  
Sbjct: 263 LLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQY---YAYVTERQKVHCLNTLFP 319

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T    IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 320 RLQT-NQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 378

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 379 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 438

Query: 361 EK 362
           E+
Sbjct: 439 EE 440


>gi|237650467|ref|ZP_04524719.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae CCRI
           1974]
 gi|237821903|ref|ZP_04597748.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae CCRI
           1974M2]
          Length = 447

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 193/368 (52%), Gaps = 13/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   + ++ V ++  +GG     Q +K
Sbjct: 61  QQLDEASDSVQ---AVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ- 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T   + K   + Q 
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKG-HDKNAQIYQL 236

Query: 237 -QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            QL+Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  +   
Sbjct: 237 TQLMQPYLAM----IFVNTKTRADELHSYLTSQGLKVAKIHGDIAPRERKRIMNQVQNLD 292

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D  
Sbjct: 293 FEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDS 352

Query: 356 HIDAIEKL 363
            I  +EKL
Sbjct: 353 DIRELEKL 360


>gi|556308|gb|AAA50407.1| protein synthesis initiation factor 4A [Mus musculus]
          Length = 406

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 128/371 (34%), Positives = 204/371 (54%), Gaps = 12/371 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F +   +I
Sbjct: 34  FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAI---SI 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++    ++  + L+L PTRELA Q+       G     +    IGG    A+ +KL+  
Sbjct: 91  LQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQME 150

Query: 123 A-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           A  +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q +
Sbjct: 151 APHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV 210

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQL 238
           L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K    C L + L
Sbjct: 211 LLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL 270

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                T+   +IF N ++ V  L   +  + F+VCA+HG++DQ+ R  I+  F+ G+ ++
Sbjct: 271 -----TITQAVIFINTRRKVDWLTEKMHARDFTVCAMHGDMDQKERDVIMREFRSGSSRV 325

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V +ED + + 
Sbjct: 326 LITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLR 385

Query: 359 AIEKLIEKKVD 369
            IE      ++
Sbjct: 386 DIETFYNTSIE 396


>gi|323455619|gb|EGB11487.1| hypothetical protein AURANDRAFT_52587 [Aureococcus anophagefferens]
          Length = 418

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/360 (32%), Positives = 186/360 (51%), Gaps = 7/360 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+P+Q + IP++LQ  +V   A+ GTGKTA+F++P   
Sbjct: 45  EFEDYFLKRELLMGIFEKGFERPSPVQERAIPIILQNRNVLARAKNGTGKTAAFIIP--- 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            LEK     +  + LIL PTRELA Q +    + GK+  +   +  GG   +    +L +
Sbjct: 102 CLEKTDPSKKFIQVLILIPTRELALQTSAVVRELGKHMKVECMVSTGGTSLKDDIMRLYK 161

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL+ TPGRILD   +G   +     +++DEAD++L   F P ++ +       RQ  
Sbjct: 162 PVHVLVGTPGRILDLSEKGVAALGRCHTVIMDEADKLLSPEFEPLLEKLVHHCSPERQIC 221

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++   E F+ NP  I +     T + I   +   + +  +K   L  L   
Sbjct: 222 LFSATFPVTVKNFKEKFIHNPYEINL-MDDLTLKGITQFY--AFVEERQKVHCLHTLFTK 278

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + +   +IFCN    V  L   + + G+S   IH  + Q  R ++   F+ G+ + +V+
Sbjct: 279 LE-INQSVIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGSTRHLVS 337

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR GR G  G A  L+  +D  ++  IE
Sbjct: 338 SDLFTRGIDIQSVNVVINFDFPKTSETYLHRIGRAGRFGHLGLAVNLITFDDRFNLYRIE 397


>gi|225562444|gb|EEH10723.1| ATP-dependent RNA helicase EIF4A [Ajellomyces capsulatus G186AR]
          Length = 386

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 114/329 (34%), Positives = 185/329 (56%), Gaps = 5/329 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L  +++  V   G+ +P+ IQ + I  V++  DV   AQ+GTGKTA+F    ++ 
Sbjct: 27  FDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATF---SISA 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    ++  + LIL PTRELA Q+       G   ++     IGGI      K L+ G
Sbjct: 84  LQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSIECHACIGGISVREDMKALQDG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I   +P + Q +L
Sbjct: 144 PQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSHGFTEQIYDIFQFLPQSTQVVL 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 204 LSATMPQDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG+++Q+ R  I+  F+ G+ ++++A+
Sbjct: 263 -TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQQQRDVIMKEFRSGSSRVLIAT 321

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIH 331
           DL ARG+D+  V  V N+D+P   ENYIH
Sbjct: 322 DLLARGIDVQQVSLVINYDLPANRENYIH 350


>gi|209543288|ref|YP_002275517.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530965|gb|ACI50902.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 596

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 115/359 (32%), Positives = 195/359 (54%), Gaps = 7/359 (1%)

Query: 16  VLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR---VR 71
            LDA GY +PTP+Q   + +     D+   AQTG+GKT +F L M   L  G  R     
Sbjct: 13  ALDARGYEEPTPVQKAVLDVAADGRDLLVSAQTGSGKTVAFGLAMADTLLGGAERFGPAG 72

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
            P  +I+ PTRELA QV              +   IGG+    + + LE GA +++ TPG
Sbjct: 73  APLAVIIAPTRELAMQVQRELSWLYAPAGARIVSCIGGMDARREARALEIGAHIVVGTPG 132

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+ DH +RG+L+++ + ++V+DEAD MLD+GF   +Q +   +P TR+TLLFSAT+  ++
Sbjct: 133 RLCDHQSRGRLVLSELRVVVLDEADEMLDLGFRDELQQLLDAMPDTRRTLLFSATIAKDI 192

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
             ++  + ++  RI  +T S   +  +  + A  A   +    +  +L+  D+    ++F
Sbjct: 193 ATLARRYQRDALRI--DTLSGARQHADITYRAVMADPREIIPAVVNILRFTDS-PTAMVF 249

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           C  ++ V ++  +L ++GFS  A+ G + Q  R + + + + G  ++ VA+D+AARG+DI
Sbjct: 250 CATRELVRHMQGALLERGFSSVALSGELGQSERTRAIESLRTGQARVCVATDVAARGIDI 309

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           P +  V +  +P  +   +HR GRTGRAGR G    +V     +  + +  + +   +W
Sbjct: 310 PALSLVVHASLPTDSATLLHRSGRTGRAGRKGVCALIVPVSMRRRAERLLTMAKVSAEW 368


>gi|67623565|ref|XP_668065.1| ATP-dependent RNA helicase [Cryptosporidium hominis TU502]
 gi|54659251|gb|EAL37837.1| ATP-dependent RNA helicase [Cryptosporidium hominis]
          Length = 361

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 119/363 (32%), Positives = 190/363 (52%), Gaps = 7/363 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
            + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+FV+P+L   EK   +  + +
Sbjct: 2   GIYEKGFERPSPIQEESIPVALAGKDILARAKNGTGKTAAFVIPLL---EKINTKKNIIQ 58

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            LIL PTRELA Q +   ++ GK+ N+   +  GG        +L     VL+ TPGRIL
Sbjct: 59  GLILVPTRELALQTSSIVKQLGKHINVQCMVSTGGTSLRDDILRLNNPVHVLVGTPGRIL 118

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D  N+    ++   + ++DEAD++L   F P I+ +   +P  RQ LL+SAT    ++  
Sbjct: 119 DLSNKKVCNLSGCFMFIMDEADKLLSPEFQPIIEELIEFLPKERQILLYSATFPVTVKGF 178

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
            + +L N   I +    +     ++     + +  +K   L  L  S+  +   IIFCN 
Sbjct: 179 KDKYLANAHEINLMDELTLKGVTQY---YAFVEEKQKLHCLNTLF-SKLQINQAIIFCNS 234

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
              V  L   + + G S   IH  + Q  R ++  +F+ G  + +V+SDL  RG+DI  V
Sbjct: 235 VTRVELLAKKITELGSSCFYIHARMLQSHRNRVFHDFRNGACRCLVSSDLITRGIDIQSV 294

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
             V NFD P  +E Y+HRIGR+GR G  G A  L+  ED  ++  IEK +  ++  +   
Sbjct: 295 NVVINFDFPKYSETYLHRIGRSGRFGHLGLAINLITYEDRYNLYRIEKELATEISPIPAQ 354

Query: 375 LSS 377
           + S
Sbjct: 355 IDS 357


>gi|446778|prf||1912301A initiation factor eIF-4A
          Length = 402

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 206/377 (54%), Gaps = 6/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F    + 
Sbjct: 31  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATF---SIA 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL++    +R  + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 88  ILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR KL    I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 148 GCHVVVGTPGRVYDMINR-KLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F+++P  I V     T E I+  F     Q + K   L  L  +
Sbjct: 207 LLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQ-FYVNVKQENWKLGTLCDLYDT 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFC  ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 266 L-SITQSVIFCTTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  +D + +  IE
Sbjct: 325 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIE 384

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 385 QFYHTTIEEMPANIADL 401


>gi|332020362|gb|EGI60783.1| Putative ATP-dependent RNA helicase me31b [Acromyrmex echinatior]
          Length = 444

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 191/361 (52%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L  +++  + + G+ KP+PIQ  +IP+ L   D+   A+ GTGKT ++ +P   
Sbjct: 56  EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDILARAKNGTGKTGAYSIP--- 112

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LE+   R  + + L++ PTRELA Q +    +  K+ ++ V +  GG        ++ +
Sbjct: 113 VLEQVDPRKDVIQALVIVPTRELALQTSQICIELAKHMDIKVMVTTGGTNLRDDIMRIYQ 172

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGRILD   +    M + +ILV+DEAD++L   F   + ++ S +P  RQ L
Sbjct: 173 KVQVIIATPGRILDLMEKNVANMEHCKILVLDEADKLLSQDFKGMLDHVISRLPHERQIL 232

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    +++  E  L++P  I +    +     ++     + Q  +K   L  L  S
Sbjct: 233 LYSATFPLTVKQFMEKHLRDPYEINLMEELTLKGVTQY---YAFVQERQKVHCLNTLF-S 288

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   +   G+    IH  + Q  R ++  +F+ G  + +V+
Sbjct: 289 KLQITQSIIFCNSTQRVELLAKKITDLGYCCYYIHAKMAQAHRNRVFHDFRAGLCRNLVS 348

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  IE
Sbjct: 349 SDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRFNLHRIE 408

Query: 362 K 362
           +
Sbjct: 409 Q 409


>gi|148906006|gb|ABR16163.1| unknown [Picea sitchensis]
          Length = 477

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 114/361 (31%), Positives = 194/361 (53%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 104 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 163

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  +++   L+L PTRELA Q +   ++  K+  + + +  GG   +    +L +
Sbjct: 164 KIDPKKNSIQV---LLLVPTRELALQTSQVCKELAKHLKIQIMVTTGGTSLKDDIMRLYQ 220

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD   +G   + +  +LV+DEAD++L   F P ++ +   +P  RQ L
Sbjct: 221 PVHILVATPGRVLDLTKKGVCNLKDCAMLVMDEADKLLSPEFQPLVEQLIGFLPENRQIL 280

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    ++   + +L+ P  I +     T + I   +   + +  +K   L  L  S
Sbjct: 281 LYSATFPVTVKSFKDKYLRKPYVINL-MDELTLKGITQFY--AFVEERQKVHCLNTLF-S 336

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 337 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQSHRNRVFHDFRNGACRNLVC 396

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 397 SDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYKIE 456

Query: 362 K 362
           +
Sbjct: 457 Q 457


>gi|146197776|dbj|BAF57607.1| DEAD box RNA helicase Me31B [Dugesia japonica]
          Length = 503

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 195/377 (51%), Gaps = 18/377 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L   ++  + + G+  P+PIQ  +IP+ L   D+   A+ GTGKT ++ +P+L  
Sbjct: 51  FDDFCLKRDILKGIYEKGWEMPSPIQEASIPISLIGRDILARAKNGTGKTGAYSIPLL-- 108

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            EK    +   + +IL PTRELA Q +    +  K+    + +  GG   +    +L++ 
Sbjct: 109 -EKIDPSINQIQGIILVPTRELALQTSQICTELAKHTETKIMVTTGGTSLKDDIVRLQQT 167

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ D   R  +  N  +ILVIDEAD++L   F   I  I S +P  RQ +L
Sbjct: 168 VHIILATPGRVNDLIKRDIVSTNFCKILVIDEADKLLSADFEEVIDYIISKLPTQRQIML 227

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           +SAT    +Q+  E  +++P  I +     T + I   +   Y Q  +K   L  L  S+
Sbjct: 228 YSATFPQSVQQFLEKHMRDPYEINL-MDELTLKGISQYYA--YVQERQKVHCLNTLF-SR 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   IIFCN  + V  L   +   G+S   IH  ++Q  R ++   F+ G  + +V +
Sbjct: 284 LQINQSIIFCNTAQRVELLAKKITDLGYSCYYIHAKMNQVYRNRVFHEFRNGNCRNLVCT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID- 358
           DL  RG+DIP V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D   +K+I+ 
Sbjct: 344 DLFTRGIDIPSVNVVINFDFPKYAETYLHRIGRSGRYGHLGVAVNLITYDDRFALKNIET 403

Query: 359 -------AIEKLIEKKV 368
                  AI K I+K++
Sbjct: 404 QLNTEIKAIPKHIDKRL 420


>gi|70945363|ref|XP_742509.1| ATP-dependent RNA helicase [Plasmodium chabaudi chabaudi]
 gi|56521533|emb|CAH79576.1| ATP-dependent RNA helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 429

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 115/360 (31%), Positives = 188/360 (52%), Gaps = 7/360 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + GY KP+PIQ ++IP+ L   ++   A+ GTGKTA+F +P+L 
Sbjct: 57  EFEDYFLKRELLMGIFEKGYEKPSPIQEESIPVALAGKNILARAKNGTGKTAAFAIPLL- 115

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             EK        + LIL PTRELA Q +   ++ GK+  +   +  GG        +L  
Sbjct: 116 --EKCNTHKNFIQGLILVPTRELALQTSAMIKELGKHMKIQCMVTTGGTSLREDIMRLYN 173

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L  TPGRILD  N+    ++   I+V+DEAD++L   F P ++ +   +P  +Q L
Sbjct: 174 AVHILCGTPGRILDLANKDVANLSGCHIMVMDEADKLLSPEFQPIVEELMKFLPKEKQIL 233

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           ++SAT    +++  + +L +   I +    +     ++     + +  +K   L  L  +
Sbjct: 234 MYSATFPVTVKEFRQIYLSDAHEINLMDELTLKGITQY---YAFVKERQKVHCLNTLF-A 289

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 290 KLQINQAIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFRNGACRCLVS 349

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  L+  ED  ++  IE
Sbjct: 350 SDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINLITYEDRFNLYKIE 409


>gi|296420816|ref|XP_002839964.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636172|emb|CAZ84155.1| unnamed protein product [Tuber melanosporum]
          Length = 593

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 129/367 (35%), Positives = 192/367 (52%), Gaps = 24/367 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L P +   +  AGY  PTPIQ   IP +L+ HD+   AQTG+GKTA+F++P+L+ 
Sbjct: 147 FDEAPLHPVMKGNIKLAGYEIPTPIQRYCIPAILEGHDLLSCAQTGSGKTAAFLIPILSK 206

Query: 63  LEKGRARVRMPR--------------TLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
           L    + +  PR               L++ PTRELA Q+ D   ++     L   ++ G
Sbjct: 207 LMGKASSLAAPRPVPGSTEPYIAQPLVLVVAPTRELATQIFDESRRFCYRSKLRPCVVYG 266

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYI 167
           G     Q  +L++G D+L+ TPGR+ D   RG++L +  ++ +VIDEAD MLDMGF P I
Sbjct: 267 GADSATQRMELKKGCDILVGTPGRLADFIERGRILSLRRLKFVVIDEADEMLDMGFEPQI 326

Query: 168 QNITSLVPFT-----RQTLLFSATMTDELQKVSENFLQNP-KRIEVNTPSSTAETIEHCF 221
           + +            +Q L+FSAT    ++K++ +FL +    I+V    ST E I    
Sbjct: 327 RKLLQSSGNANEDDDQQVLMFSATFQKAIRKLARDFLSDDFVHIKVGRIGSTHENITQ-R 385

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
           V    +  KK A+   L  +       +IF N K+   +L   L        +IHG+  Q
Sbjct: 386 VLWVDELRKKEAIYDLLCTAPPART--LIFVNHKRVADSLDDYLYNLKLPTTSIHGDRTQ 443

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R R   +  F+ G   +M+A+ +AARGLDI +V HV N+D+    + YIHRIGRT R G 
Sbjct: 444 REREDAILAFRSGKCPIMIATAVAARGLDIKNVMHVINYDMVQNIDEYIHRIGRTARIGN 503

Query: 342 HGKAFTL 348
            G A + 
Sbjct: 504 RGLATSF 510


>gi|212721126|ref|NP_001132058.1| hypothetical protein LOC100193470 [Zea mays]
 gi|194693318|gb|ACF80743.1| unknown [Zea mays]
          Length = 506

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 123/332 (37%), Positives = 182/332 (54%), Gaps = 18/332 (5%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV-------RMPRTLIL 78
           PIQ  T  LVL   D+ G A+TG GKT +FVLP+L  L  G  +        R P  L+L
Sbjct: 146 PIQATTFDLVLDGSDLVGRARTGQGKTLAFVLPILESLVNGANKASRRTEHGRTPSVLVL 205

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QV  +FE YG  + L+   + GG P+  Q   L RG D+++ TPGR+ D   
Sbjct: 206 LPTRELANQVHADFEFYGATFGLSACCVYGGSPYRPQEMALRRGVDIVVGTPGRVKDFIV 265

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--QTLLFSATMTDELQKVSE 196
           +G L +  ++  V+DEAD ML+MGF+  ++ I   V      QTLLFSAT+ + + K+S 
Sbjct: 266 KGTLNLKCLKFRVLDEADEMLNMGFVDDVELILGKVEDATKVQTLLFSATLPEWVNKLSM 325

Query: 197 NFLQ-NPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
            FL+ + K +++  N     + +++H  +A     + +  ++  +++        IIF  
Sbjct: 326 RFLKVDRKTVDLVGNEKLKASASVKH--LALPCNKAARAQVIPDIIRCYSHGGRTIIFTE 383

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            K +   L   +        A+HG++ Q  R  IL+ F+ G  Q++VA+++AARGLDI D
Sbjct: 384 TKDSASELSGLIHGSR----ALHGDVAQAQREVILAGFRSGKFQVLVATNVAARGLDIND 439

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           V  +   + P   E YIHR GRTGRAG  G A
Sbjct: 440 VQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 471


>gi|329925824|ref|ZP_08280569.1| putative DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus
           sp. HGF5]
 gi|328939612|gb|EGG35959.1| putative DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus
           sp. HGF5]
          Length = 448

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 199/347 (57%), Gaps = 6/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG++  +   + + G V P+P+Q + IP +L+  DV   +QTGTGKT +++LP+L  
Sbjct: 6   FHTLGIAEDLSSRLAEFGIVTPSPVQAEAIPPILEGKDVLATSQTGTGKTLAYLLPVLQG 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     ++  + LIL PT+ELA Q+    E+YG+   + V  LIGG   + Q +KL   
Sbjct: 66  ID---PEIKGAQKLILAPTQELAVQIVRESERYGEARGIGVLGLIGGAAAKRQIEKLRLH 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ +     KL M+ +  +V+DE D++ ++G    +  I       RQ + 
Sbjct: 123 PQLIVGTPGRVRELIEIRKLKMHQVTTIVVDEVDQVFNLGGAGDVDRILRSALRDRQLVF 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT++ E  ++ +  +  P  I ++    T   +EH +  +  +   K  +L+++++  
Sbjct: 183 LSATVSPETAELVKKEMDQPVEIGIDPERRTPSALEHYYFVS--EERDKLDMLRRVVRHY 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  +  I+F N  +++  +   L   G +  A++G+ D+ +R ++L+ F+EG  +L+VAS
Sbjct: 241 NPDR-AIVFVNATEDLAEVEAKLNYLGLNAAALYGDADKMTRSRVLNAFREGRTKLLVAS 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARGLDI  +G V N+D P  AE+Y HR GRTGR GR G A TLV
Sbjct: 300 DVAARGLDIEGLGMVINYDPPIDAEHYTHRAGRTGRMGRSGMAITLV 346


>gi|325187582|emb|CCA22119.1| predicted protein putative [Albugo laibachii Nc14]
 gi|325188860|emb|CCA23389.1| unknown putative [Albugo laibachii Nc14]
          Length = 417

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 114/361 (31%), Positives = 191/361 (52%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+  P+PIQ + +P++L   +V   A+ GTGKTA+F++P L 
Sbjct: 44  EFEDYFLKRELLMGIFEKGFEHPSPIQEEAVPIILAGRNVMARAKNGTGKTAAFIIPCLE 103

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             E  +  +++   LIL PTRELA Q +   ++ GK+  +   +  GG   +    +L  
Sbjct: 104 KTETSKKHIQV---LILVPTRELALQTSAIVKEIGKHMGVECMVSTGGTSLKDDIMRLYN 160

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRI+D  N+G   ++N   +++DEAD++L   F P ++ + +     RQ  
Sbjct: 161 TVHILVGTPGRIMDLANKGVADLSNCSTVIMDEADKLLSPEFQPLLEQLLNHTAKKRQIC 220

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++   + F++NP  I +     T + +   +   + +  +K   L  L   
Sbjct: 221 LFSATFPVTVKAFKDRFIENPYEINL-MDELTLKGVSQFY--AFVEERQKVHCLNTLFSK 277

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D +   IIFCN    V  L   + + G+S   IH  + Q  R ++   F+ G  + +V 
Sbjct: 278 LD-INQSIIFCNSVNRVELLAKKVTELGYSCFYIHAKMSQAHRNRVFHEFRNGATRHLVC 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A +++  +D  ++  IE
Sbjct: 337 SDLFTRGIDIQTVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAISMITYDDRFNLYRIE 396

Query: 362 K 362
           +
Sbjct: 397 Q 397


>gi|255072267|ref|XP_002499808.1| predicted protein [Micromonas sp. RCC299]
 gi|226515070|gb|ACO61066.1| predicted protein [Micromonas sp. RCC299]
          Length = 338

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 188/337 (55%), Gaps = 17/337 (5%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-----EKGRARVRMPRTLILE 79
           TP+Q  T+PL L   DV   A TG+GKTA++++P L  +     +   +    PR ++L 
Sbjct: 1   TPVQRHTVPLALAGRDVIASAATGSGKTAAYLIPALAEMLANEKDDTASTPARPRCVVLV 60

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA QV    ++      L VA L GG   + Q ++L +G DV++ TPGR+L     
Sbjct: 61  PTRELAHQVTLQAKRLCFKTGLKVATLHGGQSVKPQLEQLAQGPDVVVATPGRLLTCAKD 120

Query: 140 GKLL-MNNIEILVIDEADRMLDMGFIPYIQNI---TSLVPFTRQTLLFSATMTDELQKVS 195
              L M+N+  LV+DEAD+MLDMGF P ++ I       P  RQ+LLFSAT    +Q ++
Sbjct: 121 EPYLDMSNVRTLVVDEADQMLDMGFEPQVREILIGGCGTPPPRQSLLFSATFPPNVQALA 180

Query: 196 ENFLQNP---KRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
              + +P     +  N   + A  I +H  +A + +  +K  LL  +L+S+   +  ++F
Sbjct: 181 ARLVMSPGLGSGLYGNIGGAAAANITQHLLLADHLR-ERKMELLVAVLRSRPLERRTLVF 239

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
              K +        +   FS   +HG+  Q +R + L  F  G ++++VA+D+A+RGLD+
Sbjct: 240 VAAKADAKWSSAIPDPTLFSADELHGDCSQGARTRALDAFATGAVRVLVATDVASRGLDL 299

Query: 312 PDVGHVFNFDVPNRAEN---YIHRIGRTGRAGRHGKA 345
           PDV HV NFD+P  + +   Y+HRIGRT RAG+ G +
Sbjct: 300 PDVTHVVNFDLPTDSRDFDAYVHRIGRTARAGKGGTS 336


>gi|73954679|ref|XP_860431.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX6
           (DEAD-box protein 6) (ATP-dependent RNA helicase p54)
           (Oncogene RCK) isoform 4 [Canis familiaris]
          Length = 490

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 196/366 (53%), Gaps = 9/366 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 97  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

Query: 62  ILEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQN 116
            L+  +  ++       T+++ PTRELA QV+    +  K+     V    GG       
Sbjct: 157 RLDLKKDNIQGYIIGKITMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI 216

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L+    V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P 
Sbjct: 217 MRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK 276

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LL+SAT    +QK   + LQ P  I +    +     ++     Y    +K   L 
Sbjct: 277 NRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQY---YAYVTERQKVHCLN 333

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L  S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  
Sbjct: 334 TLF-SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLC 392

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +V +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  +
Sbjct: 393 RNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFN 452

Query: 357 IDAIEK 362
           + +IE+
Sbjct: 453 LKSIEE 458


>gi|70999626|ref|XP_754530.1| ATP dependent RNA helicase (Dbp8) [Aspergillus fumigatus Af293]
 gi|74674345|sp|Q4WXW1|DBP8_ASPFU RecName: Full=ATP-dependent RNA helicase dbp8
 gi|66852167|gb|EAL92492.1| ATP dependent RNA helicase (Dbp8), putative [Aspergillus fumigatus
           Af293]
          Length = 526

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/385 (32%), Positives = 207/385 (53%), Gaps = 20/385 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L ++P +V ++      KPT IQ   IP +L+  D  G ++TG+GKT +F +PML 
Sbjct: 97  SFAALNVAPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFSVPMLQ 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +    +     ++L PTRELA Q+ +  +      ++   L+ GG     Q   L  
Sbjct: 157 KWAEDPFGIF---GVVLTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRPQAIALAG 213

Query: 122 GADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSLV 174
              V+I TPGR+ DH           +  + ++V+DEADR+L  G    +P ++   S +
Sbjct: 214 RPHVVIATPGRLADHIKSSGEDTVCGLKRVRMVVLDEADRLLASGPGSMLPDVETCLSAL 273

Query: 175 PFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE---TIEHCFVATYAQY- 228
           P +  RQTLLF+AT+T E++ + +N  ++  +  V     + E   TI      TY +  
Sbjct: 274 PPSSERQTLLFTATVTPEVRAL-KNMPRSANKPPVFVTEISTENQGTIPPTLKQTYLKVP 332

Query: 229 -SKKCALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
            + + A L  LL ++ +  K  I+FCN  K    L   L +    V ++H  + Q  R  
Sbjct: 333 LTHREAFLHVLLSTEGNASKPAIVFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSERNA 392

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L+ F+    +++VA+D+A+RGLDIP V  V N+DVP   ++Y+HR+GRT RAGR G+A 
Sbjct: 393 NLARFRASAARILVATDVASRGLDIPTVSLVINYDVPRNPDDYVHRVGRTARAGRRGEAV 452

Query: 347 TLVAKEDIKHIDAIEKLIEKKV-DW 370
           TLV + D++ + AIE+ + +++ +W
Sbjct: 453 TLVGQRDVQLVLAIEERVGRQMEEW 477


>gi|293365070|ref|ZP_06611787.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           oralis ATCC 35037]
 gi|307702221|ref|ZP_07639181.1| DEAD/DEAH box helicase family protein [Streptococcus oralis ATCC
           35037]
 gi|291316520|gb|EFE56956.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           oralis ATCC 35037]
 gi|307624234|gb|EFO03211.1| DEAD/DEAH box helicase family protein [Streptococcus oralis ATCC
           35037]
          Length = 447

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 124/366 (33%), Positives = 193/366 (52%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKKFQFKNYIAEALEELKFSTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   + ++ V ++  +GG     Q +K
Sbjct: 61  QQLDETSDSVQ---AVITAPSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +   K A + +
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGR--DKNAQIYE 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L Q+       +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 236 LTQAMQPYL-AMIFVNTKTRADELHTYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EKL
Sbjct: 355 RELEKL 360


>gi|73960318|ref|XP_537128.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
           isoform 2 isoform 1 [Canis familiaris]
          Length = 620

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 121/354 (34%), Positives = 190/354 (53%), Gaps = 12/354 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF   G    +   +  +GY  PTPIQ++ IP+ L   DV   A TG+GKTA+F+LP++
Sbjct: 204 IDFEHCGFPEALNHNLKTSGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVI 263

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
           T   +     + P  LIL PTRELA Q+ +  ++       +   LL+GG+P   Q  +L
Sbjct: 264 T---RALCESKTPSALILTPTRELAIQIENQAKELMSGLPRMKTVLLVGGLPLPPQLYRL 320

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   V+I TPGR+LD   +  + +  I+I+V+DEAD ML MGF   + +I   VP   Q
Sbjct: 321 RQHVKVIIATPGRLLDIIKQSSVELCGIKIVVVDEADTMLKMGFQQQVLDILEHVPNDSQ 380

Query: 180 TLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T+L SAT+   +++++   L NP RI   E N P S+   I    +    + +KK  L +
Sbjct: 381 TILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCSSVRQI----ILWVEEPAKKKKLFE 436

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK-QGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L   +      ++F + K     L  +++K  G    +IH    Q  R  IL    EG 
Sbjct: 437 ILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGD 496

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            +++V++ +  RGLD+  V  V NFD+P+  + Y+H++GR GR G++G A T +
Sbjct: 497 YEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFI 550


>gi|225858570|ref|YP_002740080.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           70585]
 gi|225721139|gb|ACO16993.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           70585]
 gi|301793920|emb|CBW36316.1| putative helicase [Streptococcus pneumoniae INV104]
          Length = 447

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 193/368 (52%), Gaps = 13/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   + ++ V ++  +GG     Q +K
Sbjct: 61  QQLDEASDSVQ---AVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLEIVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ- 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T   + K   + Q 
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKG-HDKNAQIYQL 236

Query: 237 -QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            QL+Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  +   
Sbjct: 237 TQLMQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLD 292

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D  
Sbjct: 293 FEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDS 352

Query: 356 HIDAIEKL 363
            I  +EKL
Sbjct: 353 DIRELEKL 360


>gi|254419014|ref|ZP_05032738.1| DbpA RNA binding domain family [Brevundimonas sp. BAL3]
 gi|196185191|gb|EDX80167.1| DbpA RNA binding domain family [Brevundimonas sp. BAL3]
          Length = 634

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 121/359 (33%), Positives = 187/359 (52%), Gaps = 38/359 (10%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL---PML----TI 62
           P +  A+++ GY +PTP+Q   +       D+   AQTG+GKT +F L   P L     I
Sbjct: 8   PALDRALVNKGYAEPTPVQAAVLEGEYAERDLLVSAQTGSGKTVAFGLAAAPTLLGDKPI 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
              G A    P  L + PTRELA QVA   +    +    +A  +GG+    + + L  G
Sbjct: 68  FGPGGA----PLCLAIAPTRELAMQVAAELQWLYADSGAKIATCVGGMDARREARALGFG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ DH +RG L ++ +++ V+DEAD MLDMGF   ++ I    P  R+TLL
Sbjct: 124 VHIVVGTPGRLKDHIDRGNLDLSELKVAVLDEADEMLDMGFREDLEFILDHAPAERRTLL 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSS------------TAETIEHCFVATYAQYSK 230
           FSAT+  E+  +++ + ++  RI+    S                 IEH  V T   Y  
Sbjct: 184 FSATIAREIVTLAKRYQKDAVRIDATDKSRQHADIEYRAYRIAPNEIEHAVVNTLRWYEA 243

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+               +FC+ + +V +L  SL ++GFS  ++ G + QR R   L  
Sbjct: 244 PRAM---------------VFCSTRDSVRHLQASLLERGFSTVSLSGEMGQRERTDALQA 288

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            ++G  ++ VA+D+AARGLD+PD+G V + ++P      +HR GRTGRAG+ G +  LV
Sbjct: 289 LRDGRARVCVATDVAARGLDLPDLGLVIHAELPMNRAGLLHRSGRTGRAGKKGVSVMLV 347


>gi|111223801|ref|YP_714595.1| putative DEAD-box RNA helicase [Frankia alni ACN14a]
 gi|111151333|emb|CAJ63045.1| Putative DEAD-box RNA helicase (partial) [Frankia alni ACN14a]
          Length = 437

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 112/319 (35%), Positives = 175/319 (54%), Gaps = 7/319 (2%)

Query: 27  IQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR-ARVRMPRTLILEPTRELA 85
           +Q  T+P VL   +V G A+TG+GKT +F LP+L  L  G  A  R PR L+L PTRELA
Sbjct: 1   MQASTLPDVLAGENVLGRAKTGSGKTLAFGLPILARLASGGPAAPRRPRALVLVPTRELA 60

Query: 86  AQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMN 145
            QV+D  E   +  NL +A + GG     Q   L RG  +++ TPGR+ D   R    + 
Sbjct: 61  QQVSDALEPLTRALNLRLAPVYGGTSISRQISALRRGVHLVVATPGRLTDLVERSACELG 120

Query: 146 NIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRI 205
            IE+ V+DEAD M D+GF+P ++ +    P T Q LLFSAT+  E++ +  ++L +P  +
Sbjct: 121 EIEMTVLDEADFMCDLGFLPAVRALLDATPSTGQRLLFSATLDREVEVLVRDYLPDPVLV 180

Query: 206 EVNTPSSTAET-IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHS 264
            +++ +S   T + H   A     + + AL+  L          ++F   +++   +  S
Sbjct: 181 AIDSETSQVTTLVRHALEAP--DRAAQVALVTALAGGSGRT---LVFVRTQRDADRVAES 235

Query: 265 LEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPN 324
           L + G     +HG + Q +R + L+ F +G  +++VA+D+AARG+ +  +  V +   P 
Sbjct: 236 LSRAGVPAEPLHGGMPQGARTRALAGFTDGFYRVLVATDVAARGIHVDGIRLVIHLGPPE 295

Query: 325 RAENYIHRIGRTGRAGRHG 343
            A+ Y HR GRT RAG  G
Sbjct: 296 DAKTYQHRGGRTARAGADG 314


>gi|86141342|ref|ZP_01059888.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Leeuwenhoekiella blandensis MED217]
 gi|85831901|gb|EAQ50356.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Leeuwenhoekiella blandensis MED217]
          Length = 372

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 123/364 (33%), Positives = 207/364 (56%), Gaps = 10/364 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60
           +F  LGL+  ++  + + G   PT IQ + IPL+L+    + G AQTGTGKTA++ LP  
Sbjct: 4   NFKSLGLNKNLIKGLNELGIQTPTEIQAQVIPLLLEGATHLVGQAQTGTGKTAAYGLP-- 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
            ILE+     +  + LIL PTREL+ QVA    K+ K  + +    + GG   + Q K L
Sbjct: 62  -ILEQINPNQKSIQALILCPTRELSQQVAKQLFKFTKYTDKIFTEAVYGGEKIDIQIKNL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R   +++ TPGR++D  +R  + ++ +  +V+DEAD ML MGF   + +I S +     
Sbjct: 121 SRPTQIVVATPGRLIDLLSRKAIDLSQVNTVVLDEADEMLSMGFKQQLDDILSHLRNVEN 180

Query: 180 TLLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             LFSATM   + Q V+++  ++  RI++ +     + IEH F+    +   K  +L   
Sbjct: 181 KWLFSATMPHGIKQIVNQHMAEDAHRIQI-SRDVVNKNIEHKFLQ--CEEVDKLPILLDF 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+++   + GIIFC  K     L   L  +  +  A+ G++ Q+ R K++  FK  ++++
Sbjct: 238 LKTKKG-ERGIIFCKTKAATAKLAKQLIAKNIAAEALQGDMLQKERDKVMRAFKNESLRV 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+  V ++ +P++ E Y HR GRT RAG+ G +  LV  ++++ + 
Sbjct: 297 LVATDIAARGIDVQDLTFVVHYQMPDQEEYYTHRSGRTARAGKEGLSLALVTSKELRILR 356

Query: 359 AIEK 362
           + EK
Sbjct: 357 SYEK 360


>gi|302415451|ref|XP_003005557.1| ATP-dependent RNA helicase dhh-1 [Verticillium albo-atrum VaMs.102]
 gi|261354973|gb|EEY17401.1| ATP-dependent RNA helicase dhh-1 [Verticillium albo-atrum VaMs.102]
          Length = 390

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 118/350 (33%), Positives = 184/350 (52%), Gaps = 7/350 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +  L   ++  + +AG+ KP+PIQ + IP+ L   DV   A+ GTGKTA+FV+P L
Sbjct: 46  LEFENFQLKRDLLMGIFEAGFEKPSPIQEEAIPVALTGRDVLARAKNGTGKTAAFVIPAL 105

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK   +V   + LIL PTRELA Q +   +  GK+  + V +  GG        +L+
Sbjct: 106 ---EKINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIIRLQ 162

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +    ++   + ++DEAD++L + F P I+ +    P  RQ 
Sbjct: 163 DPVHIVVGTPGRILDLAGKTVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQV 222

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++  S+  + NP  I +     T   I   +   + +  +K   L  L  
Sbjct: 223 MLFSATFPLSVKDFSDKNMANPYEINL-MDELTLRGITQYY--AFVEEKQKVHCLNTLF- 278

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q++R ++  +F+ G  + +V
Sbjct: 279 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMAQQARNRVFHDFRNGVCRNLV 338

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G     ++L A
Sbjct: 339 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLADGWSLRA 388


>gi|289676925|ref|ZP_06497815.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. syringae
           FF5]
          Length = 382

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 109/303 (35%), Positives = 171/303 (56%), Gaps = 4/303 (1%)

Query: 66  GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           G A+VR+  R +IL PTRELA Q     E++ +   +   L+ GG  F+ Q   L +  D
Sbjct: 1   GPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD 60

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +LI TPGR+L+  N G L + ++E+LV+DEADRMLDMGF   ++ +        QT+LFS
Sbjct: 61  ILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFS 120

Query: 185 ATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           AT     L+++    L++P+ ++VN+ S  A    H  +       K+  L    L + +
Sbjct: 121 ATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVL--NWLLANE 178

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
           T +  IIF N K     L   L    +    +HG+ DQ+ R   +   K+G  ++MVA+D
Sbjct: 179 TYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATD 238

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARGLD+  +  V NFD+P   ++Y+HR+GRTGRAG  G A +L+   D   + ++E+ 
Sbjct: 239 VAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERY 298

Query: 364 IEK 366
           +++
Sbjct: 299 LKQ 301


>gi|47218719|emb|CAG05691.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 727

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 123/348 (35%), Positives = 197/348 (56%), Gaps = 21/348 (6%)

Query: 28  QIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE---KGRARVRMPRTLILEPTREL 84
           ++KT   V    DV   A+TGTGKT SF +P++  L+      AR R P+ L+L PTREL
Sbjct: 181 KVKTFDPVYDGEDVIAQARTGTGKTFSFAIPLVEKLQGDSAAPARGRAPKVLVLTPTREL 240

Query: 85  AAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLM 144
           A QVA +F+   K   L++    GG  +  Q + +  G D+L+ TPGRI DH    KL +
Sbjct: 241 AIQVAKDFKDIIKK--LSIVCFYGGTSYMPQIEAIRNGIDILVGTPGRIKDHLQNHKLDL 298

Query: 145 NNIEILVIDEADRMLDMGFIPYIQNITSL-----VPFTRQTLLFSATMTDELQKVSENFL 199
           + ++ +V+DE D+MLDMGF   ++ I +L          QTLLFSAT    +  V++ ++
Sbjct: 299 SKLKHVVLDEVDQMLDMGFAEQVEEILALSYKKDADTNPQTLLFSATCPPWVYDVAKKYM 358

Query: 200 Q-NPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ-SQDTMKNGIIFCNQK 255
           + + K +++        A T+EH  +A +  +S++ A++  +++    +    I+FC  K
Sbjct: 359 RPSCKHVDLIGKKTQKAATTVEHLAIACH--WSQRAAVIGDVIRVYSGSHGRAIVFCETK 416

Query: 256 K--NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
           K  N + L  S+++   S   +HG+I Q+ R   L  F++G+ +++VA+++AARGLDIP+
Sbjct: 417 KEANELALNASIKQNAQS---LHGDIPQKQRETTLKGFRKGSFEVLVATNVAARGLDIPE 473

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           V  V     P   E+YIHR GRTGRAGR G       +++   +  +E
Sbjct: 474 VDLVVQCSPPKDVESYIHRSGRTGRAGRTGICICFYQRKEEDQLRYVE 521


>gi|312866296|ref|ZP_07726514.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus downei
           F0415]
 gi|311097990|gb|EFQ56216.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus downei
           F0415]
          Length = 446

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 125/364 (34%), Positives = 193/364 (53%), Gaps = 9/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D      +  A+    + +PTP+Q K IP+V    D+ G ++TG+GKT +F+LP   I
Sbjct: 2   FKDYNFKDYINRALDLMSFKEPTPVQAKLIPVVRSGRDLVGESKTGSGKTHTFLLP---I 58

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKLE 120
            EK +  +   + +I  P+RELA+Q+    ++        + L+  +GG     Q +KL+
Sbjct: 59  FEKLQENLNQVQAVITAPSRELASQIYQAAKQIADQAETEIRLVNYVGGTDKLRQIEKLK 118

Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            G   ++I TPGRI D      L ++     V+DEAD  +DMGF+  +  I + +P T Q
Sbjct: 119 AGQPQIIIGTPGRIYDLIKSSHLDIHKASTFVVDEADMTMDMGFLDTVDKIAASLPETVQ 178

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  ++T  +  K   +L+ L 
Sbjct: 179 ILVFSATIPQKLQPFLKKYLTNPVIEKIKTQTVIADTIDNWLLSTKGR-DKNSQILEILT 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   +IF N K+    L + L   G  V  IHG I  R R +I++  K    + +
Sbjct: 238 SLHPYL--AMIFVNTKERADELHNFLLANGLKVAKIHGGIPPRERKRIMNQIKRLDYEYI 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I  
Sbjct: 296 VATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDIRE 355

Query: 360 IEKL 363
           +EKL
Sbjct: 356 LEKL 359


>gi|317575817|ref|NP_001187807.1| spliceosome RNA helicase bat1 [Ictalurus punctatus]
 gi|308324021|gb|ADO29146.1| spliceosome RNA helicase bat1 [Ictalurus punctatus]
          Length = 426

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 122/357 (34%), Positives = 194/357 (54%), Gaps = 15/357 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+V+ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FV+  L  
Sbjct: 45  FRDFILKPEVLRAIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVIATLQQ 104

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
           L   E+G     M R L+L  TRELA Q++  +E++ K    + V +  GG+P     + 
Sbjct: 105 LDPEEEG-----MTRVLVLCHTRELAYQISKEYERFSKYMPKIKVGVFFGGMPLRRDIES 159

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD-MGFIPYIQNITSLVPF 176
             +GA  +++ TPGRILD      L ++NI+  +IDE D+MLD +     +Q+I    P 
Sbjct: 160 FGKGAPHIVVGTPGRILDLIRNKALKLDNIKHFIIDECDKMLDTLDMRRDVQDIFRQTPR 219

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALL 235
           ++Q ++FSATM+ +++ V  NF+Q+P  I ++  S  T   +   +V    +  K   L 
Sbjct: 220 SKQVMMFSATMSKDIRPVCRNFMQDPLEIFIDNDSKLTLHGLRQHYVKV-KENEKNRKLF 278

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + L + Q      IIF    +  + LC  L  Q F   A+H ++ Q  R++    FK   
Sbjct: 279 ELLDELQ--FNQVIIFVKSVQRCIALCQLLVDQNFPAIAMHRSMSQEERLERYQAFKNFQ 336

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            +L+VA++L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T ++ E
Sbjct: 337 KRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDE 393


>gi|322802957|gb|EFZ23094.1| hypothetical protein SINV_02194 [Solenopsis invicta]
          Length = 686

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 120/336 (35%), Positives = 188/336 (55%), Gaps = 19/336 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEKGRARVRM----- 72
           +GY KPTP+Q   IP+++   DV   AQTG+GKTA+FVLP+L ++L+  R  ++      
Sbjct: 105 SGYTKPTPVQKYAIPIIMSGRDVMVCAQTGSGKTAAFVLPILHSLLQNRRNSIKTNFSCE 164

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
           P  +I+ PT  + +Q+ D F+K+  N  + + ++  G P   Q      G  VLI TPG+
Sbjct: 165 PYAIIVSPTC-VMSQIYDEFKKFSLNSIIRIEVIYKG-PSILQQTNKANGCHVLIATPGK 222

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI----TSLVPFTRQTLLFSATMT 188
           +LD   RG ++++++   V++EAD+ML +GF+ YI+ I    T +    +Q L+FSAT  
Sbjct: 223 LLDFIERGNVVLSSLRFFVLNEADKMLKLGFLSYIERIIQHKTMVAAKKKQMLMFSATFP 282

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN- 247
           +++Q+++  FLQN   +EV         +E  F      +  K  LL +L++ +    N 
Sbjct: 283 NKIQELAGRFLQNYLFLEVGIIRGACANVEQIF-ELVCDHRHKRELLIELIEKKKQFGNL 341

Query: 248 --GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              +IF  QKK+  ++   L K      +IHG      + K L +F EG I  ++ S +A
Sbjct: 342 NGTLIFVEQKKHTNSIAAFLTKYNCPATSIHG-FRFSQKEKALFDFNEGKI--LIVSAVA 398

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           ARGLDI +V HV NFD P   + Y+HRIGR G  G+
Sbjct: 399 ARGLDIKNVSHVINFDFPRTIDEYVHRIGRVGNCGK 434



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 32/159 (20%)

Query: 203 KRIEVNTPSSTA--------ETIEHCFVATYAQYSKKCALLQQLLQSQD--TMKNGIIFC 252
           K++EV+  S ++          +EH F  T ++ S K  LL++L +     +M+  +IF 
Sbjct: 498 KQLEVDDASDSSLKLLKGAYADVEHNFYWTCSR-SDKIKLLKELFKQNQLTSMEGTLIFV 556

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNID----------QRSRMKILSNFKEGTIQLMVAS 302
           + K             GF  C + GNI           ++ R K+L+ F++G + L++ +
Sbjct: 557 DMKL----------VAGFVACVLSGNIYSSAYLVEDNLEKDREKVLAKFEQGKLALVI-T 605

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
            + ARGLDI +V HV NFD+P   + Y++RIGR G  G+
Sbjct: 606 PVVARGLDIKNVLHVINFDLPRTIKEYVNRIGRVGNRGK 644


>gi|296201834|ref|XP_002748196.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 3
           [Callithrix jacchus]
          Length = 544

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 117/324 (36%), Positives = 178/324 (54%), Gaps = 14/324 (4%)

Query: 51  KTASFVLPMLT------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA 104
           +T S++LP +        LE+G      P  L+L PTRELA QV     +Y +   L   
Sbjct: 74  ETLSYLLPAIVHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKST 129

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
            + GG P   Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF 
Sbjct: 130 CIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFE 189

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFV 222
           P I+ I   +   RQTL++SAT   E+++++E+FL++   I +     S+    ++   V
Sbjct: 190 PQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDV 249

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
               +  +K   L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+
Sbjct: 250 CHDVEKDEKLIRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQ 308

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R  +L+ FK G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + 
Sbjct: 309 ERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKT 368

Query: 343 GKAFTLVAKEDIKHI-DAIEKLIE 365
           G A+T     +IK + D I  L E
Sbjct: 369 GTAYTFFTPNNIKQVSDLISVLRE 392


>gi|225860734|ref|YP_002742243.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229616|ref|ZP_06963297.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255810|ref|ZP_06979396.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298502545|ref|YP_003724485.1| ATP-dependent RNA helicase [Streptococcus pneumoniae TCH8431/19A]
 gi|225727110|gb|ACO22961.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238140|gb|ADI69271.1| ATP-dependent RNA helicase [Streptococcus pneumoniae TCH8431/19A]
 gi|327390117|gb|EGE88460.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA04375]
          Length = 447

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 193/368 (52%), Gaps = 13/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   + ++ V ++  +GG     Q +K
Sbjct: 61  QQLDEASDSVQ---AVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ- 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T   + K   + Q 
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKG-HDKNAQIYQL 236

Query: 237 -QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            QL+Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  +   
Sbjct: 237 TQLMQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLD 292

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D  
Sbjct: 293 FEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDS 352

Query: 356 HIDAIEKL 363
            I  +EKL
Sbjct: 353 DIRELEKL 360


>gi|194388512|dbj|BAG60224.1| unnamed protein product [Homo sapiens]
          Length = 544

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 117/324 (36%), Positives = 178/324 (54%), Gaps = 14/324 (4%)

Query: 51  KTASFVLPMLT------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA 104
           +T S++LP +        LE+G      P  L+L PTRELA QV     +Y +   L   
Sbjct: 74  ETLSYLLPAIVHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKST 129

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
            + GG P   Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF 
Sbjct: 130 CIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFE 189

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFV 222
           P I+ I   +   RQTL++SAT   E+++++E+FL++   I +     S+    ++   V
Sbjct: 190 PQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDV 249

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
               +  +K   L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+
Sbjct: 250 CHDVEKDEKLIRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQ 308

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R  +L+ FK G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + 
Sbjct: 309 ERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKT 368

Query: 343 GKAFTLVAKEDIKHI-DAIEKLIE 365
           G A+T     +IK + D I  L E
Sbjct: 369 GTAYTFFTPNNIKQVSDLISVLRE 392


>gi|90962087|ref|YP_536003.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
 gi|90821281|gb|ABD99920.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
          Length = 440

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 195/368 (52%), Gaps = 15/368 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +      +  A+ +  + +PT +Q + IP +L+   V G +QTG+GKT +F+LP+  
Sbjct: 3   NFREFNFKEYIYQALDEINFKEPTEVQARLIPTILKGKSVVGQSQTGSGKTHTFLLPIFQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKL 119
            L   +  V+    +I  P+RELA Q+ +  ++  K    N+ +   +GG   + Q +KL
Sbjct: 63  NLNAQKDEVQ---AVITTPSRELAYQIYEAAKQLAKFSPENIWIQNYVGGTDKQRQIEKL 119

Query: 120 E-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +     ++I TPGRILD      L ++N   LV+DEAD  LD+GF+     I S +P   
Sbjct: 120 KSHQPQLVIGTPGRILDLVRENALDIHNAHYLVVDEADMTLDLGFLKETDAIASTLPKDL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+     ++ NP    V      + TI++  ++T  +   K  L+  L
Sbjct: 180 QMLVFSATIPEKLRPFLRKYMYNPVIEVVANKHVISPTIDNWLISTKGRDRNK--LIYDL 237

Query: 239 LQSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L    TM      ++F N K+    L + L  QG  V  +HG I  R R +I+   +   
Sbjct: 238 L----TMGEPYLALVFANTKERADELTNYLRSQGLKVAKVHGGIQPRQRKRIMREIQNLD 293

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            Q +VA+DLAARG+DI  V HV N D+P   E ++HR+GRTGR G  G A TL    + K
Sbjct: 294 YQFVVATDLAARGIDIEGVSHVINDDIPEDLEFFVHRVGRTGRNGMKGTAITLYEPSEEK 353

Query: 356 HIDAIEKL 363
            ID +E +
Sbjct: 354 LIDELESM 361


>gi|308456140|ref|XP_003090535.1| hypothetical protein CRE_31571 [Caenorhabditis remanei]
 gi|308262642|gb|EFP06595.1| hypothetical protein CRE_31571 [Caenorhabditis remanei]
          Length = 745

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 114/354 (32%), Positives = 190/354 (53%), Gaps = 12/354 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS +    + +  Y KPT IQ  TI   L   DV G A+TG+GKT + V+P+L  
Sbjct: 77  FTDFPLSWRTQEGLKENEYTKPTEIQRDTIAHSLSGADVVGAAKTGSGKTLALVIPILEA 136

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + R         L++ PTRELA Q        GK++  +  L+IGG     +  ++  
Sbjct: 137 LWRARWSPEYGLGALVISPTRELALQTFSTINAVGKHHGFSCGLVIGGSEVSYEKNRIS- 195

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           G ++++CTPGR+L H +  + +  ++++ILV+DEADRMLDMGF   + +I + +P  RQT
Sbjct: 196 GINIIVCTPGRLLQHMDENEQMNCDSLQILVLDEADRMLDMGFAKQLNSIVNNLPSERQT 255

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT T  ++ +      +P  + V  N  ++T + ++  +V    +   K   L   
Sbjct: 256 LLFSATQTRNVKDLCRVCTNDPVFVSVHENASAATPDNLKQSYV--IVEEESKINTLWSF 313

Query: 239 LQSQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +++    K  +IF   C Q + +  +   L + G  V  + G ++Q+ R++  + F E  
Sbjct: 314 IEAH-KKKKSLIFVSSCKQARFLTEVFSQL-RPGLPVMGLWGTMNQKKRIETFTKFDEAK 371

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
             +++A+D+A+RGLD   +  V   D P + ++YIHR+GR+ R    G +  +V
Sbjct: 372 AAVLIATDVASRGLDFEHIDWVIQMDCPAQIDDYIHRVGRSARMDDSGNSLLMV 425


>gi|296141104|ref|YP_003648347.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
 gi|296029238|gb|ADG80008.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
           DSM 20162]
          Length = 476

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 122/364 (33%), Positives = 186/364 (51%), Gaps = 9/364 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+   VV A++      P PIQ  T+P  L   DV G  +TG+GKT +F +P++  
Sbjct: 6   FTDLGVPAGVVDALVAMDRPTPFPIQADTLPDTLAGRDVLGRGKTGSGKTLAFAIPLVVA 65

Query: 63  LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +++ R   R P     L+L PTRELA Q+    E   K   LTV  + GG+    Q + L
Sbjct: 66  VDEARGSRRRPGRPVGLVLAPTRELATQITATVEPLAKALGLTVTTIFGGVKQSRQEQAL 125

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++  PGR+ D   +  + ++++ + V+DEAD M D+GF+P +  I +  P   Q
Sbjct: 126 AAGVDIVVACPGRLEDLMRQRIVDLSDVAVTVLDEADHMADLGFLPVVTRILAATPSDGQ 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQL 238
            +LFSAT+ + + K+   FL  P    V+  +S  A+   H F    +    K  L++ L
Sbjct: 186 RMLFSATLDNGVDKLVRKFLSEPVMHSVDPENSPVADMTHHVF--EVSGKDDKSELVRVL 243

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                 M   I+F   K     L   L  QG     +HGN+ Q  R + L  F  G  ++
Sbjct: 244 ASG---MGRRILFTRTKHQAKKLAKQLTAQGIPARDLHGNLSQPQRDRNLEAFSTGAARV 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+ + D+  V + D P   + Y+HR GRT RAG  G   T++  E  +   
Sbjct: 301 LVATDIAARGVHVDDIELVVHVDPPAEHKAYLHRSGRTARAGSAGTVVTVMLTEQKRDTV 360

Query: 359 AIEK 362
           A+ K
Sbjct: 361 ALLK 364


>gi|301123369|ref|XP_002909411.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262100173|gb|EEY58225.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 411

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 114/361 (31%), Positives = 191/361 (52%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ + +P++L   +V   A+ GTGKTA+F++P   
Sbjct: 38  EFEDYFLKRELLMGIFEKGFERPSPIQEEAVPIILAGRNVMARAKNGTGKTAAFIIP--- 94

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            LEK     +  + LIL PTRELA Q +   ++ GK+  +   +  GG   +    +L +
Sbjct: 95  CLEKTDTSKKHIQVLILVPTRELALQTSAIVKEIGKHMGIECMVSTGGTSLKDDIMRLYQ 154

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR++D  N+G   ++    +++DEAD++L   F P ++ + +     RQ  
Sbjct: 155 TVHILVGTPGRVMDLANKGVADLSQCSTVIMDEADKLLSPEFQPLLEQLLNHTAKQRQIC 214

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++   + F++NP  I +     T + +   +   + +  +K   L  L   
Sbjct: 215 LFSATFPVTVKAFKDRFVENPYEINL-MDELTLKGVSQFY--AFVEERQKVHCLNTLFSK 271

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D +   IIFCN    V  L   + + G+S   IH  ++Q  R ++   F+ G  + +V 
Sbjct: 272 LD-INQSIIFCNSVNRVELLAKKVTELGYSCFYIHAKMNQAHRNRVFHEFRNGATRHLVC 330

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  ++  ED  ++  IE
Sbjct: 331 SDLFTRGIDIQTVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINMITYEDRFNLYRIE 390

Query: 362 K 362
           +
Sbjct: 391 Q 391


>gi|74654532|sp|Q9Y7C4|ROK1_CANAL RecName: Full=ATP-dependent RNA helicase CHR1
 gi|4589366|gb|AAD26468.1| DEAD box RNA helicase [Candida albicans]
          Length = 578

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 134/432 (31%), Positives = 223/432 (51%), Gaps = 24/432 (5%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKG 66
           ++ KV+  ++D  +++PTPIQ ++IP+ L   D+   A TG+GKT +F++P++  IL K 
Sbjct: 138 INKKVLSNLIDNEFIEPTPIQCESIPITLNNRDLIACAPTGSGKTLAFLIPLVQQILSKN 197

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLERGA-D 124
            ++    R LI+ PT ELA Q+    E   +    + VA+L   +  +  N  ++    D
Sbjct: 198 VSKNHGIRGLIISPTNELAVQIFQELEIITRGCKQINVAILSKQLASKLNNNIIKSSKYD 257

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPFTRQTLLF 183
           +++ TP R++D   +G + ++ IE L+IDEAD++ D GF      I T       +  +F
Sbjct: 258 IIVSTPLRLIDVVKQGNMDLSKIEQLIIDEADKLFDHGFAEQTDEILTHCTNLKIRKSIF 317

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT+   +++++ + +++P RI +    + + TI+   V T  +  K  A+ +Q++Q  +
Sbjct: 318 SATIPSSVEEMAHSIMKDPLRIIIGHKEAASNTIDQKLVFTGNEQGKLLAI-RQMIQQGE 376

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
                IIF         L H L     +V  IH     + R +++  FK G I +++ +D
Sbjct: 377 FKPPIIIFLQSITRAKALFHELLYDRLNVDVIHAERTPKQREEVIKRFKNGDIWVLITTD 436

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           + ARG+D   V  V N+DVP  A+ Y+HRIGRTGR G+ GKA T   KED K I  I  +
Sbjct: 437 VLARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDDKAIKPILNV 496

Query: 364 IEKK------VDWLNGDLSSLNPPLEKIDIAQHNHARKN-NPIP----------QKSTGF 406
           +++         W+  D+  L+   EK  I  H   RK  + +P          Q     
Sbjct: 497 MKQSGCNDGYSQWME-DMGKLSKK-EKKQIKTHEIQRKKISTVPKVIKQKRKQRQDMIAA 554

Query: 407 DRRKKNYSSQKS 418
            +R+K  S QKS
Sbjct: 555 SKRRKQESKQKS 566


>gi|48478417|ref|YP_024123.1| ATP-dependent RNA helicase [Picrophilus torridus DSM 9790]
 gi|48431065|gb|AAT43930.1| ATP-dependent RNA helicase [Picrophilus torridus DSM 9790]
          Length = 387

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 126/343 (36%), Positives = 191/343 (55%), Gaps = 10/343 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ +PT +Q   IP +L   DV   + TG+GKTA+F++P +   ++          LI+ 
Sbjct: 23  GFYEPTEVQGLAIPEILSGRDVVIKSMTGSGKTAAFLIPAI---QRALGSKFFNTVLIIL 79

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA Q         +N+  T  ++ GG   E Q   L R + ++I TPGRI+D  NR
Sbjct: 80  PTRELALQTYSVALNISRNFFRT-TVVYGGSSMEKQIHDL-RDSKIIIGTPGRIIDLINR 137

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
             L + ++ + ++DEAD MLDMGFI  I  I   +P  RQ +L SATM + L  + +N +
Sbjct: 138 DLLNLEHVGMFILDEADMMLDMGFIDDIYKIIENLPEKRQNVLASATMPERLDDMIKNLM 197

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
            +P+ I V+    T +TI H +     ++ K  ALL  + +++D  +  IIF   K   V
Sbjct: 198 NDPELIAVSN-GYTPKTIVHDY-TIIPEHKKFSALLSYIDENRDMKR--IIFVRTKHGAV 253

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            L   L K GF    +HG++ QRSR   +  F+     +M+A+++AARG+DIPDV  + N
Sbjct: 254 VLSEILNKCGFKNVTLHGDMRQRSREISIKRFRNYRSGIMIATNVAARGIDIPDVDEIIN 313

Query: 320 FDVP-NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           FD P +  ++Y HR GR+GR GR G A T+  ++    I+ IE
Sbjct: 314 FDAPIDDIKSYSHRAGRSGRFGRPGHALTIFTEKQKNMINEIE 356


>gi|312221299|emb|CBY01239.1| hypothetical protein [Leptosphaeria maculans]
          Length = 613

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 125/354 (35%), Positives = 199/354 (56%), Gaps = 13/354 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L LS + + A+ + G+   T IQ KTIP +L   DV G A+TG+GKT +F++P + +
Sbjct: 136 FSELNLSDRTMEAIKNMGFETMTEIQQKTIPPLLSGKDVLGAAKTGSGKTLAFLIPAIEM 195

Query: 63  LEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   R + R     +++ PTRELA Q+     +  + ++ T  ++IGG    A+ +KL +
Sbjct: 196 LSAMRFKPRNGTGVIVVSPTRELALQIFGVARELMEKHSQTFGIVIGGANRRAEAEKLVK 255

Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           G ++LI TPGR+LDH  N    +  N++ L+IDEADR+L++GF   ++++  ++P  RQT
Sbjct: 256 GVNLLIATPGRLLDHLHNTQGFVFKNLKSLIIDEADRILEVGFEDEMRSVIKILPSDRQT 315

Query: 181 LLFSATMTDELQKVSENFLQ-NPKRIEVN--TPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +LFSAT T +++ ++   L+  P  I V+     ST E +E  +V        +  LL  
Sbjct: 316 MLFSATQTTKVEDLARISLKPGPLYINVDYRKEHSTVEGLEQGYV--ICDSDTRFRLLFS 373

Query: 238 LLQSQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            L+     K  + F  CN  K    L + ++     V  +HG + Q+ R      F   T
Sbjct: 374 FLKKHQKKKVIVFFSSCNSVKFYAELLNYID---LPVLELHGKLKQQVRTNRFFEFCNAT 430

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
              ++ +D+AARGLDIP+V  V  FD P+   +YIHR+GRT R G  GK  +L+
Sbjct: 431 SGTLICTDVAARGLDIPEVDWVIQFDPPDDPRDYIHRVGRTAR-GSDGKGRSLM 483


>gi|163797256|ref|ZP_02191210.1| putative cold-shock DEAD-box protein A (ATP-dependent RNA helicase
           DEAD) [alpha proteobacterium BAL199]
 gi|159177551|gb|EDP62105.1| putative cold-shock DEAD-box protein A (ATP-dependent RNA helicase
           DEAD) [alpha proteobacterium BAL199]
          Length = 575

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 115/333 (34%), Positives = 179/333 (53%), Gaps = 6/333 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEKGR--ARVRMPRTL 76
           GY  PTP+Q   +   +   D+   AQTG+GKT +F L +  T+LE+     R   P  L
Sbjct: 19  GYETPTPVQASVLAPEVSSADLLVSAQTGSGKTVAFGLAIAPTLLEEAERFGRAEEPLAL 78

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           ++ PTRELA QV    +          A  +GG+    +   L  GA ++I TPGR+ DH
Sbjct: 79  VVAPTRELALQVRRELDWLYAPTGARTASCVGGMDMRRERDVLSSGAHLVIGTPGRLRDH 138

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
             RG L ++ I  +V+DEAD MLD+GF   ++ I    P  R+TL+FSAT+   +  +++
Sbjct: 139 IERGSLDLSKIRAVVLDEADEMLDLGFREDLEYILDAAPSDRRTLMFSATVPSTIAHLAK 198

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
            + +N  R+      +    IE+      A   +  A++  LL      ++ ++FC  + 
Sbjct: 199 RYQRNAVRLATAGERTQHHDIEY-RAHLVAPNDRDNAIVNTLLFHD--ARSAMVFCGTRI 255

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
            V +L   L  +GFSV A+ G + Q  R   L   ++G  ++ VA+D+AARG+D+P +  
Sbjct: 256 AVQHLSSRLANRGFSVVALSGELSQNERTHALQAIRDGRARVCVATDVAARGIDLPTLDL 315

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           V + DVPN ++  +HR GRTGRAGR G +  +V
Sbjct: 316 VVHADVPNNSDTLLHRSGRTGRAGRKGVSVLIV 348


>gi|255074681|ref|XP_002501015.1| predicted protein [Micromonas sp. RCC299]
 gi|226516278|gb|ACO62273.1| predicted protein [Micromonas sp. RCC299]
          Length = 403

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 128/371 (34%), Positives = 196/371 (52%), Gaps = 21/371 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   +V A    G  +PT IQ   IP +L        + TG+GKT +++LP++  
Sbjct: 3   FADLGLEEALVAATDSMGLTRPTDIQASAIPKILSGGHFLVASHTGSGKTLTYLLPVIQQ 62

Query: 63  L-----EKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +     E G RA+ + PR LI+ PTRELA QV    +    +   +  L+IGG  F  Q 
Sbjct: 63  MKDAERETGARAKPKRPRVLIVGPTRELAEQVRSVAKAVSHHCKFSSELIIGGEKFATQR 122

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV-- 174
           + L+R  DV++ TPGRI+ H   G L ++N+  +++DEAD + + GF   ++ +   +  
Sbjct: 123 QVLDRSLDVVVGTPGRIIKHCEEGNLFLSNVTHVILDEADTLFEAGFGDEVRRLLRPLQK 182

Query: 175 -PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
            P  +Q ++ SATM +++ K+    L + +RI+  +   +A  + H FV        K A
Sbjct: 183 NPEGKQCIVVSATMAEKVAKMVSAELPDLQRIDTPSLHKSAPNLRHRFVDCPGSVD-KMA 241

Query: 234 LLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           +++Q++     + K  ++FCN   +   +  SL +    V   +G++    R + +  F 
Sbjct: 242 IVEQIVSGDFRSGKKTMVFCNTMPSCQAVEFSLNEAELPVVMYNGDMTAEERKESMREFV 301

Query: 293 E-----GTIQLMVASDLAARGLDIPD-----VGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
           E     GT  +MV +DLAARGLD        V HV NFD P    +YIHR GRT RAG  
Sbjct: 302 EGSHADGTAVVMVCTDLAARGLDFGGGEKGKVDHVVNFDFPMNPIDYIHRSGRTARAGAT 361

Query: 343 GKAFTLVAKED 353
           GK   LVAK+D
Sbjct: 362 GKVTNLVAKKD 372


>gi|302416461|ref|XP_003006062.1| ATP-dependent RNA helicase HAS1 [Verticillium albo-atrum VaMs.102]
 gi|261355478|gb|EEY17906.1| ATP-dependent RNA helicase HAS1 [Verticillium albo-atrum VaMs.102]
          Length = 587

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 127/364 (34%), Positives = 205/364 (56%), Gaps = 20/364 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ L LS K + A+   G+ K T IQ + IP +L   DV G A+TG+GKT +F++P + 
Sbjct: 111 DFSQLNLSEKTMKAIEGMGFTKMTEIQRRGIPPLLTGRDVLGAAKTGSGKTLAFLIPAIE 170

Query: 62  ILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + R     +++ PTRELA Q+     +  ++++ T  ++IGG    A+ +KL 
Sbjct: 171 MLSSLRFKPRNGTGVIVVSPTRELALQIFGVARELMEHHSQTYGIVIGGANRRAEAEKLA 230

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQ 179
           +G +++I TPGR+LDH      +  N++ L+IDEADR+L++GF   ++ I  ++P   RQ
Sbjct: 231 KGVNLIIATPGRLLDHLQNTPFVFKNLKTLIIDEADRILEIGFEDEMRQIVKILPSADRQ 290

Query: 180 TLLFSATMTDELQKVSENFLQ-NPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQ 236
           T LFSAT T +++ ++   L+  P  I V+     ST E +E  +V       K+  LL 
Sbjct: 291 TSLFSATQTTKVEDLARISLRAGPLYINVDQTKEHSTVEGLEQGYV--ICDEDKRFLLLF 348

Query: 237 QLLQSQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF-- 291
             L+ ++  K  I+F   CN  K    L + ++     V ++HG + Q++R      F  
Sbjct: 349 SFLK-RNLKKKVIVFFSSCNSVKYHAELLNYID---LPVLSLHGKMKQQARTNTFFEFCN 404

Query: 292 -KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
            K+GT   ++ +D+AARGLDIP V    +FD P+   +YIHR+GRT RA   GK+   + 
Sbjct: 405 AKQGT---LICTDVAARGLDIPSVDWSVSFDPPDAPTDYIHRVGRTARANAKGKSLLFLH 461

Query: 351 KEDI 354
             ++
Sbjct: 462 PSEV 465


>gi|242053635|ref|XP_002455963.1| hypothetical protein SORBIDRAFT_03g028100 [Sorghum bicolor]
 gi|241927938|gb|EES01083.1| hypothetical protein SORBIDRAFT_03g028100 [Sorghum bicolor]
          Length = 500

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 126/376 (33%), Positives = 201/376 (53%), Gaps = 22/376 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    +SP  + A+ DAGY + T +Q  T+P++LQ  DV   A+TGTGKT +F+LP + +
Sbjct: 101 FDQCAISPLSLKAIKDAGYERMTQVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEV 160

Query: 63  LEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQN 116
           L        +PR+     L++ PTRELA QVA    K  K + +L V ++IGG     + 
Sbjct: 161 LSA------LPRSTSINLLVMCPTRELANQVAAEARKLLKYHRSLGVQVVIGGTRLPQEQ 214

Query: 117 KKLERG-ADVLICTPGRILDHFNRG---KLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           + ++     +L+ TPGR+ DH          +  +++LV+DEADR+LDMGF   I+ I S
Sbjct: 215 RSMQANPCQILVATPGRLKDHLENTPGFSTRIKGVKVLVLDEADRLLDMGFRRDIEKIIS 274

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQYSK 230
            +P  RQTLLFSAT+++E++++S   ++      +NT     E        TY  A    
Sbjct: 275 FIPKERQTLLFSATVSEEVRQISHLAMKRDYNF-INTVQEGDEETHAQVNQTYMIAPLDL 333

Query: 231 KCALLQQLLQ---SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
              +L  +L+   ++D     I+FC        +   L +   ++  IH    Q +R K+
Sbjct: 334 HFPILYDVLKKHVAEDAEYKVIVFCTTAMVTKLVAEVLSQLKLNIREIHSRKSQSARTKV 393

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
              F++    ++V+SD++ARG+D PDV  V    +P   E YIHR+GRTGR G+ G+   
Sbjct: 394 SDEFRKSKGLILVSSDVSARGVDYPDVTLVMQVGLPADREQYIHRLGRTGRKGKEGQGIL 453

Query: 348 LVAKEDIKHIDAIEKL 363
           L+A  ++  +  +  L
Sbjct: 454 LLAPWEMHFLSIVNDL 469


>gi|310791524|gb|EFQ27051.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 550

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 129/384 (33%), Positives = 210/384 (54%), Gaps = 20/384 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ + + P +V ++ +    +PT IQ   IP +L+  D  G ++TG+GKT +F +P   I
Sbjct: 122 FSAINVRPWLVQSLANMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVP---I 178

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K          L+L PTRELA Q+ + F+      +L   L+ GG     Q   L + 
Sbjct: 179 LQKWAEDPTAIFALVLTPTRELALQIFEQFKAISSPQSLKAILVTGGSDMRPQAIALAQR 238

Query: 123 ADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDM----GFIPYIQNITSLV 174
             V+I TPGR+ DH           +  ++ +V+DEADR+LD       IP ++   S++
Sbjct: 239 PHVVIATPGRLADHIRTSGEDTICGLRRVKYVVLDEADRLLDATGPGSMIPDVEECLSVL 298

Query: 175 PFT--RQTLLFSATMTDELQKVSENFLQNPKR----IEVNTPS-STAETIEHCFVATYAQ 227
           P +  RQTLLF+AT+T E++ + +  L+  K+     EV+T S +   T+    +     
Sbjct: 299 PPSSQRQTLLFTATITPEVRALKDMPLKPGKQPVFVCEVDTQSLAIPATLSQMHLQVPVT 358

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
           + ++  L   LL   +  K+ IIFCN+      L H L      V ++H  + QR R+  
Sbjct: 359 H-REHYLHTFLLTDGNVEKSVIIFCNRTSTADYLHHLLRLLDHRVTSLHSGLPQRQRVDN 417

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L  F+    +++VA+D+A+RGLDIP+V  V N+D+P   ++YIHR+GRT RAGR G+A T
Sbjct: 418 LGRFRAAAARILVATDVASRGLDIPEVALVINYDIPRNPDDYIHRVGRTARAGRKGEAVT 477

Query: 348 LVAKEDIKHIDAIEKLIEKKVD-W 370
            V + D++ + AIE  + ++++ W
Sbjct: 478 FVGQRDVELVLAIEARVGRQMEAW 501


>gi|225448554|ref|XP_002273715.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 595

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 134/380 (35%), Positives = 216/380 (56%), Gaps = 25/380 (6%)

Query: 3   FADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           F++L   LS  V+ A+  +G+   TP+Q  TIPL+    DV   A TG+GKT +FV+P++
Sbjct: 20  FSELNPPLSEPVLEALTQSGFHFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLV 79

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNK 117
            IL +  +  +  + L  IL PTREL++Q+ +  + +     N+   LL+GG+  ++  K
Sbjct: 80  EILRRASSAPKPHQVLGVILSPTRELSSQIYNVAQPFISTLPNVKSVLLVGGVEVKSDLK 139

Query: 118 KLER-GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           K+E  GA++LI TPGR+ D   R  +L   N+EIL++DEADR+LDMGF   I +I + +P
Sbjct: 140 KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILILDEADRLLDMGFQKQITSIIARLP 199

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATY--------- 225
             R+T LFSAT T+ ++++S+  L+NP R+EV   + S  +++    +A+          
Sbjct: 200 KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAEAKSLNDSVSSQQLASSKTPSGLNIE 259

Query: 226 ---AQYSKKCALLQQLLQSQDTMKNGIIF----CNQKKNVVNLCHSLEKQGFSVCAIHGN 278
               +  KK + L  LL    + K  I F    C     V+    S+ K GFS+  +HG 
Sbjct: 260 YLECEADKKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVILPRLSVLK-GFSLIPLHGK 318

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
           + Q +R K L++F   +  +++ +D+AARGLDIP V  +  +D P     +IHR+GRT R
Sbjct: 319 MKQTAREKALASFTSLSSGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTAR 378

Query: 339 AGRHGKAFTLVAKEDIKHID 358
            GR G A   +  ++  +++
Sbjct: 379 MGRQGSAVVFLLPKEEAYVE 398


>gi|195048518|ref|XP_001992542.1| GH24149 [Drosophila grimshawi]
 gi|193893383|gb|EDV92249.1| GH24149 [Drosophila grimshawi]
          Length = 798

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 131/403 (32%), Positives = 214/403 (53%), Gaps = 25/403 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA   LS K   A+ ++ ++  T +Q ++I   LQ  DV G A TG+GKT +F++P+L  
Sbjct: 65  FAQFPLSQKTQKALAESKFITATEVQRQSIGPALQGKDVLGAAITGSGKTLAFLIPVLEH 124

Query: 63  LEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   + +R      +I+ PTRELA Q+ +  +K GK+++ +  L+IGG   + +  ++++
Sbjct: 125 LYMNKWSRSDGVGAIIISPTRELAYQIFETLKKVGKHHDFSAGLIIGGKNLKFERTRMDQ 184

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++LICTPGR+L H +   L   + +E+LV+DEADR LDMGF   +  I    P  RQT
Sbjct: 185 -CNILICTPGRLLQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNAIIENFPPDRQT 243

Query: 181 LLFSATMTDELQKVSENFLQNPKRI------EVNTPSSTA------ETIEHCFVATYAQY 228
           LLFSAT T+ L+ ++   LQ P  +         TP+S A      E ++  +V    + 
Sbjct: 244 LLFSATQTNTLEDLARLNLQQPVYVGYGTANSTTTPASNAAVLALPELLQQSYVVLPLE- 302

Query: 229 SKKCALLQQLLQSQDTMKNGIIF----CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
            +K  +L   +++   +K  II     C Q K +  +   L + G  + A++G + Q  R
Sbjct: 303 -EKITMLWSFIKNH--LKQKIIVFVASCKQAKYLYEIFCKL-RPGVGLLALYGTLHQDKR 358

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
           + I   F   +  +M A+D+A+RGLD P V  V   D P     YIHR GR+ R   HG+
Sbjct: 359 IAIYEEFLRKSQVVMFATDVASRGLDFPAVNWVLQLDCPEDVSQYIHRAGRSARNKSHGE 418

Query: 345 AFTLVAKEDIKH-IDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
              ++   + +H I A+ + +  ++  ++ D   L  P  KI+
Sbjct: 419 CLLVMTPNEEEHMIGALREQLNVEIKSVHIDPKKLFSPRVKIE 461


>gi|171778129|ref|ZP_02919386.1| hypothetical protein STRINF_00221 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283111|gb|EDT48535.1| hypothetical protein STRINF_00221 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 447

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 125/366 (34%), Positives = 194/366 (53%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D    P +  A+ +  +  PT +Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFNDFNFKPYIRVALAELKFKNPTEVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG--KNYNLTVALLIGGIPFEAQNKK 118
             L++    V++   +I  P+REL  Q+    ++        + VA  +GG     Q +K
Sbjct: 61  EKLDETSDNVQV---VITAPSRELVTQIYQATKQIADKSETEIRVANYVGGTDKLRQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+     ++I TPGRI D    G L +      V+DEAD  LDMGF+  +  I S +P  
Sbjct: 118 LKSSQPHIVIGTPGRIYDLVKSGDLEIYKAHTFVVDEADMTLDMGFLDTVDKIASTLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  V+T  +   K A + +
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEKIKTTTVIADTIDNWLVSTKGR--DKNAQILE 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + ++ +     +IF N K+    L   L   G  V  IHG I  R R + ++  K+ + +
Sbjct: 236 ITKALNPYL-AMIFVNTKERADELHSYLVSNGLKVAKIHGGIPPRERKRTMNQTKKLSYE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G +G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLNGIAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EKL
Sbjct: 355 RELEKL 360


>gi|50556564|ref|XP_505690.1| YALI0F21032p [Yarrowia lipolytica]
 gi|74659647|sp|Q6C0X2|DHH1_YARLI RecName: Full=ATP-dependent RNA helicase DHH1
 gi|49651560|emb|CAG78499.1| YALI0F21032p [Yarrowia lipolytica]
          Length = 522

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 122/360 (33%), Positives = 182/360 (50%), Gaps = 7/360 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++  + +AG+  P+PIQ + IP+ L   D+   A+ GTGKTA+FV+P L  
Sbjct: 30  FEDFFLKRELLMGIFEAGFENPSPIQEEAIPIALAGRDILARAKNGTGKTAAFVIPAL-- 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            ++   +V   + LI+ PTRELA Q +   +  GK+  + V +  GG        +LE  
Sbjct: 88  -QQVNPKVNKIQALIMVPTRELALQTSQVCKTLGKHLGIKVMVTTGGTNLRDDIMRLEDT 146

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             VL+ TPGR+LD   +G   ++   + ++DEAD++L   F P I+ +    P  RQ LL
Sbjct: 147 VHVLVGTPGRVLDLAGKGVADLSESPMFIMDEADKLLSPDFTPIIEQVLHFFPEDRQILL 206

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    ++   +  L  P  I +     T   I   +   +    +K   L  L    
Sbjct: 207 FSATFPLTVKAFMDRNLHKPYEINL-MDELTLRGITQYYA--FVDEKQKLHCLNTLFSKL 263

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D +   IIFCN    V  L   + + G+S    H  + Q  R ++   F+ GT + +V S
Sbjct: 264 D-INQSIIFCNSTVRVELLARKITELGYSCYYSHAKMIQSHRNRVFHEFRNGTCRNLVCS 322

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+   D  ++  IE+
Sbjct: 323 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGIAINLINWNDRYNLYKIEQ 382


>gi|328870453|gb|EGG18827.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 897

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 124/371 (33%), Positives = 198/371 (53%), Gaps = 20/371 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L +S   +  + +  Y+  T IQ  +IP  L   D+ G A+TG+GKT +F++PML +
Sbjct: 132 FNQLPISKLTMKGLDEKKYIDMTDIQRSSIPHSLCGRDILGAAKTGSGKTLAFIVPMLEL 191

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L +    +      +IL PTRELA Q+ D     GK ++ +  L+IGG   + + KK+  
Sbjct: 192 LYRNSWNIEDGVGAIILSPTRELAIQIFDVLRDAGKYHSFSAGLIIGGKNVDNEKKKINE 251

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++LI TPGR+L H +  +    NN+++L++DEADR+LD GF   + +I   +P +RQT
Sbjct: 252 -MNILIATPGRLLQHMDETEGFRCNNLQMLILDEADRILDFGFTKTLNSIVQNLPSSRQT 310

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV------NTPSSTAETIEHCFVATYAQYSKKCAL 234
           LLFSAT T  ++ ++   L+ P+ + V      +TP++  +T+       ++    K  L
Sbjct: 311 LLFSATQTKSVKDLARLSLREPEYVSVYDRDLMSTPANLTQTV------MFSTLEDKINL 364

Query: 235 LQQLLQSQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
           L   L S  T K  I+F   C Q + +    + L   G  +  +HG + Q SR+ +   F
Sbjct: 365 LYSFLHSHLTKKT-IVFLTTCKQVRFIYETFY-LINPGCRLFQLHGKMKQTSRLDVFQQF 422

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
            +  +  + A+D+AARGLD P V  V   D P+    YIHR+GRT R    G + T++  
Sbjct: 423 CDEKMGTLFATDVAARGLDFPTVDWVIQMDCPDDIATYIHRVGRTARNNTEGNSLTVLLP 482

Query: 352 EDIKHIDAIEK 362
            +   I  +EK
Sbjct: 483 TEKPFIKLMEK 493


>gi|15900655|ref|NP_345259.1| DEAD-box ATP dependent DNA helicase [Streptococcus pneumoniae
           TIGR4]
 gi|111658348|ref|ZP_01409036.1| hypothetical protein SpneT_02000488 [Streptococcus pneumoniae
           TIGR4]
 gi|149025531|ref|ZP_01836464.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP23-BS72]
 gi|168484834|ref|ZP_02709779.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC1873-00]
 gi|225854268|ref|YP_002735780.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae JJA]
 gi|303261432|ref|ZP_07347380.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|303268729|ref|ZP_07354519.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae BS458]
 gi|307127689|ref|YP_003879720.1| ATP-dependent RNA helicase [Streptococcus pneumoniae 670-6B]
 gi|14972235|gb|AAK74899.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           pneumoniae TIGR4]
 gi|147929403|gb|EDK80400.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP23-BS72]
 gi|172041993|gb|EDT50039.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC1873-00]
 gi|225722536|gb|ACO18389.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae JJA]
 gi|302637566|gb|EFL68053.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|302641789|gb|EFL72146.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae BS458]
 gi|306484751|gb|ADM91620.1| ATP-dependent RNA helicase [Streptococcus pneumoniae 670-6B]
 gi|332077176|gb|EGI87638.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA17545]
          Length = 447

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 193/368 (52%), Gaps = 13/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   + ++ V ++  +GG     Q +K
Sbjct: 61  QQLDEASDSVQ---AVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ- 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T   + K   + Q 
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKG-HDKNAQIYQL 236

Query: 237 -QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            QL+Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  +   
Sbjct: 237 TQLMQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLD 292

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D  
Sbjct: 293 FEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDS 352

Query: 356 HIDAIEKL 363
            I  +EKL
Sbjct: 353 DIRELEKL 360


>gi|331246301|ref|XP_003335784.1| DEAD-box ATP-dependent RNA helicase 35 [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309314774|gb|EFP91365.1| DEAD-box ATP-dependent RNA helicase 35 [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 728

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 135/361 (37%), Positives = 197/361 (54%), Gaps = 20/361 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVK-PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F D+ L P  V   L    +K PTPIQ++ +P+ L   D+ GIA TG+GKT +F LP+L 
Sbjct: 293 FQDMRL-PSPVLKYLKEKKIKLPTPIQLQGLPVALSGRDMIGIAFTGSGKTLAFSLPLLL 351

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNF-------EKYGKNYNLTVALLIGG 109
           +  +   ++       P  +I+ P+RELA Q  +          + GK   L   L IGG
Sbjct: 352 LALEAEMKLPFIQGEGPVGIIVCPSRELARQTYEGLVAMALACAQSGKYPQLGTLLCIGG 411

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           I    Q+  + +G  +++ TPGR+ D   + K  ++N   L +DEADRM+DMGF   ++N
Sbjct: 412 ISMADQSHVMSKGFHMVVATPGRLQDMLEKRKFNLDNCTYLCLDEADRMVDMGFEDDVRN 471

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I S     RQTLLFSATM   ++  +EN L  P  I VN   + A  ++   V    +Y 
Sbjct: 472 IMSFFKRQRQTLLFSATMPKTIRDFAENSLVQP--IVVNVGRAGAANLD---VIQEVEYV 526

Query: 230 KKCALLQQLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           K+ A +  LL+  Q T    IIF + K  V ++   L  +G    AIHG+  Q  R   +
Sbjct: 527 KQEAKMVYLLECLQKTPPPVIIFSDNKNEVDDIQEYLLLKGVEAVAIHGSKTQEEREYAI 586

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +FK G   +MVAS +A++GLD  ++ HV NF +P   ENY+H+IGRTGR+G+ G A T 
Sbjct: 587 KSFKSGKKDVMVASGVASKGLDFAEIQHVINFTMPGEIENYVHQIGRTGRSGKTGIATTF 646

Query: 349 V 349
           +
Sbjct: 647 I 647


>gi|221485654|gb|EEE23935.1| DEAD/DEAH box RNA helicase, putative [Toxoplasma gondii GT1]
          Length = 962

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 149/424 (35%), Positives = 204/424 (48%), Gaps = 61/424 (14%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + DL LS  ++ A+ D  Y  PT IQ   +   L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 226 WGDLPLSRPLLRAIQDLEYAHPTHIQAACLRPALEGRDLLANAQTGSGKTAAFLLPTLER 285

Query: 63  LEKG---RAR----------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
           L      R+R          +R  + L+L PTRELA Q     +   K   +T AL  GG
Sbjct: 286 LLHSPGVRSRKMTANGPTGGLRGTKALVLLPTRELAMQCVQMLQCLSKYTPITHALACGG 345

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNN-------IEILVIDEADRMLDMG 162
           +  +A    L    D+++ TPGRILD      LL+N+       +EI+V+DEADR+L++G
Sbjct: 346 MTLKAHESALRHQPDIVVATPGRILD------LLLNSPTVHLELLEIIVLDEADRLLELG 399

Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRI--EVNTPSSTA------ 214
           F   I  I       RQTLLFSAT+T  +  ++   L  P  I  E     STA      
Sbjct: 400 FREEILAILRHCHRARQTLLFSATLTPSIASLASLALNRPLHISAEATVTDSTAGREKSG 459

Query: 215 -----------------ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
                             T+E  FV  + +  +  ALL   L +    KN I+F   KK 
Sbjct: 460 FTVTSLQAATAALKTVSSTLEQQFVMLHREEHRAPALLH--LCTTAYTKNVIVFFQTKKL 517

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
                   +  G     +HGN+ Q+ R++ L  F  G    ++AS+LA+RGLDI  V  V
Sbjct: 518 AHQTSLLFKFMGLKYAELHGNLTQQMRVEALERFHAGEADFLLASELASRGLDIAGVEAV 577

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
            NF+VP   + YIH +GRT R GR G A T      I H D  E+L  KK+  L+   S 
Sbjct: 578 INFNVPADIDRYIHSVGRTARMGRSGVAVT------IYHRDGTERLQVKKL--LHALRSG 629

Query: 378 LNPP 381
           LN P
Sbjct: 630 LNQP 633


>gi|148989841|ref|ZP_01821135.1| peptide chain release factor 2 [Streptococcus pneumoniae SP6-BS73]
 gi|147924783|gb|EDK75867.1| peptide chain release factor 2 [Streptococcus pneumoniae SP6-BS73]
          Length = 401

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 193/368 (52%), Gaps = 13/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   + ++ V ++  +GG     Q +K
Sbjct: 61  QQLDEASDSVQ---AVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ- 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T   + K   + Q 
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKG-HDKNAQIYQL 236

Query: 237 -QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            QL+Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  +   
Sbjct: 237 TQLMQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLD 292

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D  
Sbjct: 293 FEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDS 352

Query: 356 HIDAIEKL 363
            I  +EKL
Sbjct: 353 DIRELEKL 360


>gi|302542709|ref|ZP_07295051.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase DeaD [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302460327|gb|EFL23420.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase DeaD [Streptomyces
           himastatinicus ATCC 53653]
          Length = 339

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 111/308 (36%), Positives = 173/308 (56%), Gaps = 18/308 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F +LG+ P+   A+   G   P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L  
Sbjct: 36  FRELGILPETAEALEAVGITSPFPIQEMTLPVALSGSDVIGQAKTGTGKTLGFGLPLLER 95

Query: 61  ----TILEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                 +E GRA+       P+ L++ PTREL  QV ++    GK   + V  + GG  +
Sbjct: 96  VVVPADIEAGRAKPDQLTDAPQALVVVPTRELCQQVTNDLLTAGKVRAVRVLSIYGGRAY 155

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E Q + L++G DV++ TPGR+LD   + KL +++++ LV+DEAD MLD+GF+P ++ I  
Sbjct: 156 EPQVEALKKGVDVVVGTPGRLLDLAGQKKLRLSSVKALVLDEADEMLDLGFLPDVEKIIQ 215

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP----SSTAETIEHCFVATYAQY 228
           L+P  RQT+LFSATM   +  ++  ++  P  I    P     + A T +H F    A  
Sbjct: 216 LLPAKRQTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGQTVANTTQHVF---RAHS 272

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
             K  L+ ++LQ+ D     +IFC  K+   ++   L ++GF+  A+HG++ Q +R + L
Sbjct: 273 MDKPELVSRILQA-DGRGLAMIFCRTKRTAADIADQLSRRGFASGAVHGDLGQGAREQAL 331

Query: 289 SNFKEGTI 296
             F+ G +
Sbjct: 332 RAFRNGKV 339


>gi|221502971|gb|EEE28681.1| DEAD/DEAH box RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 959

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 149/424 (35%), Positives = 204/424 (48%), Gaps = 61/424 (14%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + DL LS  ++ A+ D  Y  PT IQ   +   L+  D+   AQTG+GKTA+F+LP L  
Sbjct: 223 WGDLPLSRPLLRAIQDLEYAHPTHIQAACLRPALEGRDLLANAQTGSGKTAAFLLPTLER 282

Query: 63  LEKG---RAR----------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
           L      R+R          +R  + L+L PTRELA Q     +   K   +T AL  GG
Sbjct: 283 LLHSPGVRSRKMTANGPTGGLRGTKALVLLPTRELAMQCVQMLQCLSKYTPITHALACGG 342

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNN-------IEILVIDEADRMLDMG 162
           +  +A    L    D+++ TPGRILD      LL+N+       +EI+V+DEADR+L++G
Sbjct: 343 MTLKAHESALRHQPDIVVATPGRILD------LLLNSPTVHLELLEIIVLDEADRLLELG 396

Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRI--EVNTPSSTA------ 214
           F   I  I       RQTLLFSAT+T  +  ++   L  P  I  E     STA      
Sbjct: 397 FREEILAILRHCHRARQTLLFSATLTPSIASLASLALNRPLHISAEATVTDSTAGREKSG 456

Query: 215 -----------------ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
                             T+E  FV  + +  +  ALL   L +    KN I+F   KK 
Sbjct: 457 FTVTSLQAATAALKTVSSTLEQQFVMLHREEHRAPALLH--LCTTAYTKNVIVFFQTKKL 514

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
                   +  G     +HGN+ Q+ R++ L  F  G    ++AS+LA+RGLDI  V  V
Sbjct: 515 AHQTSLLFKFMGLKYAELHGNLTQQMRVEALERFHAGEADFLLASELASRGLDIAGVEAV 574

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
            NF+VP   + YIH +GRT R GR G A T      I H D  E+L  KK+  L+   S 
Sbjct: 575 INFNVPADIDRYIHSVGRTARMGRSGVAVT------IYHRDGTERLQVKKL--LHALRSG 626

Query: 378 LNPP 381
           LN P
Sbjct: 627 LNQP 630


>gi|119491751|ref|XP_001263370.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
 gi|134034081|sp|A1D6X9|DBP8_NEOFI RecName: Full=ATP-dependent RNA helicase dbp8
 gi|119411530|gb|EAW21473.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
          Length = 526

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 127/385 (32%), Positives = 207/385 (53%), Gaps = 20/385 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L ++P +V ++      KPT IQ   IP +L+  D  G ++TG+GKT +F +PML 
Sbjct: 97  SFAALNVAPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFSVPMLQ 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +    +     ++L PTRELA Q+ +  +      ++   L+ GG     Q   L  
Sbjct: 157 KWAEDPFGIF---GVVLTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRPQAIALAG 213

Query: 122 GADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSLV 174
              V+I TPGR+ DH           +  + ++V+DEADR+L  G    +P ++   S +
Sbjct: 214 RPHVVIATPGRLADHIKSSGEDTVCGLKRVRMVVLDEADRLLASGPGSMLPDVETCLSAL 273

Query: 175 PFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE---TIEHCFVATYAQY- 228
           P +  RQTLLF+AT+T E++ + +N  ++  +  V     + E   +I      TY +  
Sbjct: 274 PPSSERQTLLFTATVTPEVRAL-KNMPRSANKPPVFVTEISTENQGSIPPTLKQTYLKVP 332

Query: 229 -SKKCALLQQLLQSQD-TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
            + + A L  LL ++D   +  IIFCN  K    L   L +    V ++H  + Q  R  
Sbjct: 333 LTHREAFLHVLLSTEDNASRPAIIFCNHTKTADLLERMLRRLTHRVTSLHSLLPQSERNA 392

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L+ F+    +++VA+D+A+RGLDIP V  V N+DVP   ++Y+HR+GRT RAGR G+A 
Sbjct: 393 NLARFRASAARILVATDVASRGLDIPTVSLVINYDVPRNPDDYVHRVGRTARAGRSGEAI 452

Query: 347 TLVAKEDIKHIDAIEKLIEKKV-DW 370
           TLV + D++ + AIE+ + +++ +W
Sbjct: 453 TLVGQRDVQLVLAIEERVGRQMEEW 477


>gi|148985890|ref|ZP_01818984.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|169832682|ref|YP_001694222.1| ATP-dependent RNA helicase [Streptococcus pneumoniae Hungary19A-6]
 gi|147922036|gb|EDK73160.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|168995184|gb|ACA35796.1| ATP-dependent RNA helicase [Streptococcus pneumoniae Hungary19A-6]
 gi|301799777|emb|CBW32346.1| putative helicase [Streptococcus pneumoniae OXC141]
          Length = 447

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 193/368 (52%), Gaps = 13/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   + ++ V ++  +GG     Q +K
Sbjct: 61  QQLDEASDSVQ---AVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ- 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T   + K   + Q 
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKG-HDKNAQIYQL 236

Query: 237 -QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            QL+Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  +   
Sbjct: 237 TQLMQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLD 292

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D  
Sbjct: 293 FEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDS 352

Query: 356 HIDAIEKL 363
            I  +EKL
Sbjct: 353 DIRELEKL 360


>gi|149007640|ref|ZP_01831257.1| peptide chain release factor 2 [Streptococcus pneumoniae SP18-BS74]
 gi|147760795|gb|EDK67766.1| peptide chain release factor 2 [Streptococcus pneumoniae SP18-BS74]
          Length = 412

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 193/368 (52%), Gaps = 13/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   + ++ V ++  +GG     Q +K
Sbjct: 61  QQLDEASDSVQ---AVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ- 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T   + K   + Q 
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKG-HDKNAQIYQL 236

Query: 237 -QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            QL+Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  +   
Sbjct: 237 TQLMQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLD 292

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D  
Sbjct: 293 FEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDS 352

Query: 356 HIDAIEKL 363
            I  +EKL
Sbjct: 353 DIRELEKL 360


>gi|23501038|ref|NP_697165.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
 gi|254705304|ref|ZP_05167132.1| DEAD-box ATP dependent DNA helicase [Brucella suis bv. 3 str. 686]
 gi|261756015|ref|ZP_05999724.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|23346903|gb|AAN29080.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis
           1330]
 gi|261745768|gb|EEY33694.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
          Length = 626

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 119/347 (34%), Positives = 189/347 (54%), Gaps = 10/347 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEK- 65
           ++P +  A+   GY   T +Q   +       D+   AQTG+GKT +F L M  TILE  
Sbjct: 7   IAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMANTILEDE 66

Query: 66  ---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
              G A    P  +I+ PTRELA QV    E    +    +A  +GG+    + + LERG
Sbjct: 67  LRFGDAGA--PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALERG 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TP R+ DH  R  L M+ +  +V+DEAD MLDMGF   ++ I    P  R+TL+
Sbjct: 125 SHIVVGTPRRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDRRTLM 184

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++++ F  N  RI V + +S    I++  +     + +  A++  LL   
Sbjct: 185 FSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPV-PPHERDHAIINTLLYYD 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +N IIFC+ ++ V ++   L  +GF+V A+ G + Q  R   L   ++G  ++ VA+
Sbjct: 244 S--QNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVAT 301

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+P++  V + D+P   +  +HR GRTGRAGR G    +V
Sbjct: 302 DVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVV 348


>gi|56202232|dbj|BAD73664.1| putative DEAD box protein [Oryza sativa Japonica Group]
 gi|56202381|dbj|BAD73793.1| putative DEAD box protein [Oryza sativa Japonica Group]
          Length = 423

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 185/340 (54%), Gaps = 14/340 (4%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+  PT IQ + IP  LQ  DV G+ QTG+GKTA+F LP++  L +   R       +L 
Sbjct: 2   GWKAPTRIQAEVIPFALQGRDVIGVGQTGSGKTAAFALPIIQALLEHEHRPCFF-ACVLA 60

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL---------ICTP 130
           PTRELA Q+A  FE  G   +L  +++          + L +G D           + TP
Sbjct: 61  PTRELAIQIAKQFEALGSAISLQCSVVWWRSSRACLPEHLRKGFDSWQLWKERNSRVGTP 120

Query: 131 GRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           GR+LDH    K    N ++ LV+DEAD +L + F   + +I +++P  R+T LFSATMT+
Sbjct: 121 GRLLDHLTNTKGFSFNKLKYLVLDEADDLLKVDFQKAVDDILNVIPKERRTFLFSATMTE 180

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
           +++K+    L+NP ++EV +  S  +T+        A+Y K C L+  L +   +M   +
Sbjct: 181 KVKKLRRACLKNPVKVEVASKYSLVDTLRQDLYVVPAKY-KDCYLIHVLNKMPGSMI--M 237

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           +F    ++   L   L    F   +I G + Q  R+  L+ F+     ++V +D+A+RGL
Sbjct: 238 VFVRTCESTRLLALMLRNLRFKAISISGQMSQDKRLGALNRFRTRDCNILVCTDVASRGL 297

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           DI  V  V N+D P  +++YIHR+GRT RAG+ G A +LV
Sbjct: 298 DIQGVDVVINYDFPLNSKDYIHRVGRTARAGQSGYAVSLV 337


>gi|322392273|ref|ZP_08065734.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           peroris ATCC 700780]
 gi|321144808|gb|EFX40208.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           peroris ATCC 700780]
          Length = 407

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 125/367 (34%), Positives = 190/367 (51%), Gaps = 11/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTQFKFKKYIEEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG--KNYNLTVALLIGGIPFEAQNKK 118
             L++    V++   +I  P+RELA Q+     +        + VA  +GG     Q  K
Sbjct: 61  QQLDEESDSVQV---VITAPSRELATQIYQAARQIAGHSEVEIRVANYVGGTDKARQIDK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAQTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQ 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +  + +   L 
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYELT 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q++Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K    
Sbjct: 238 QVMQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDF 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   
Sbjct: 294 EYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSD 353

Query: 357 IDAIEKL 363
           I  +EKL
Sbjct: 354 IRELEKL 360


>gi|312379831|gb|EFR25992.1| hypothetical protein AND_08228 [Anopheles darlingi]
          Length = 803

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 116/380 (30%), Positives = 193/380 (50%), Gaps = 27/380 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V+  +L  GY  PTPIQ KTIP+++   DV  +A+TG+GKT SF++PM   
Sbjct: 39  FQAMGLSAPVLKGILKMGYKVPTPIQRKTIPIIMDGRDVVAMAKTGSGKTGSFLIPMFEK 98

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L +  A+     R LIL PTRELA Q     ++ G+  +L   L++GG   +AQ   +  
Sbjct: 99  LRQREAKAGGGARALILSPTRELAIQTFRFIKQLGRFMDLKTILVLGGDSMDAQFAAVHT 158

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR L       L + +++  V+DEADR+ +MGF   + +    +P  RQ +
Sbjct: 159 LPDIIVATPGRFLHLCVEMDLKLGSVQYCVLDEADRLFEMGFGEQLSDTLKRLPEARQMV 218

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +   +   L  P  + ++  S   E +                        
Sbjct: 219 LFSATLPKMMVDFAMAGLCQPVLVRLDVESKIPEAL------------------------ 254

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +K  +IF   + +V  +   L K G     ++  +D  +R    + F    + ++V 
Sbjct: 255 --ALKYTVIFAGTQHHVELVSLILTKAGIPNSHVYSALDASARKINTAKFTMRKVNVLVV 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP + +V N   P + + +IHR+GR  RAGR G A+++ + +DI H+  + 
Sbjct: 313 TDIAARGLDIPSLDYVINLHFPGKPKLFIHRVGRCARAGRSGVAYSIFSNDDIAHLIDLN 372

Query: 362 KLIEKKVDWLNGDLSSLNPP 381
             +++ ++  +     + PP
Sbjct: 373 MFLDRPLEVSDRATIGIPPP 392


>gi|225463083|ref|XP_002263640.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 635

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 135/383 (35%), Positives = 196/383 (51%), Gaps = 23/383 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS +V+ AV + G   PT IQ   +P VL+   V   + TG+GKT +++LP++ +
Sbjct: 121 FEELGLSEEVMAAVRETGISVPTEIQCIGVPAVLEGRSVVLGSHTGSGKTLAYMLPLVQL 180

Query: 63  LEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           L +  A      + R PR ++L PTREL+ QV    +    +      ++ GG     Q 
Sbjct: 181 LRRDEALSGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE 240

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L    D+++ TPGR+L H   G ++   I+ LV+DEAD M D GF P I+    L P 
Sbjct: 241 DSLNIPIDMVVGTPGRVLQHIEEGNMVYGEIKYLVLDEADTMFDRGFGPDIRKF--LAPL 298

Query: 177 TR----------QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                       QT+L +ATMT  +QK+ +   Q    +  +T      +  H F+    
Sbjct: 299 KNRASKSDDQGFQTVLVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSG 358

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRM 285
             +K  ALLQ L  S       ++FCN   +   + H L E Q F+V   HG +    R+
Sbjct: 359 SENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLGENQIFTV-NYHGEVPAEQRV 417

Query: 286 KILSNFK--EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           + L  FK  +G    +V +DLAARGLD+ DV HV  FD P  + +Y+HR GRT R G  G
Sbjct: 418 ENLKKFKTEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 476

Query: 344 KAFTLVAKEDIKHIDAIEKLIEK 366
           K  +LVAK+D+     IE+ I K
Sbjct: 477 KVTSLVAKKDLLLATRIEEAIRK 499


>gi|90420716|ref|ZP_01228622.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335007|gb|EAS48768.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 583

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 152/500 (30%), Positives = 240/500 (48%), Gaps = 57/500 (11%)

Query: 9   SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
           S  +  A+ + GYV PTP+Q   +       D+   AQTG+GKT ++ L +   L     
Sbjct: 7   STPLAHALAERGYVDPTPVQDAVLEPQAADRDLLVSAQTGSGKTIAYGLALAPTLLGEAE 66

Query: 69  R---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
           R      P  LI+ PTRELA QV              +   +GG+   A+ +KL +GA +
Sbjct: 67  RFGPAGAPMALIVAPTRELAMQVTTELAWLYAQTGAEMVTCVGGMDPRAEKRKLAQGAHI 126

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           ++ TPGR+ DH  RG L +  ++ LV+DEAD ML++GF   ++ +    P  R+TLLFSA
Sbjct: 127 VVGTPGRLRDHLERGALQIGGLKALVLDEADEMLNLGFREDLEFLLEATPRERRTLLFSA 186

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           T+   +  +++ + ++  RIE    S+    IE+  +       +   +   +L+  D  
Sbjct: 187 TLPKLISSMAKRYQRDALRIEATRSSAAHADIEYKAIRIAPNELEHAVV--NVLRFNDA- 243

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
            + I+FCN ++ V +L   L ++GFS   + G + Q  R + +   ++G  ++ VA+D+A
Sbjct: 244 PSAIVFCNTREAVRHLSSGLLERGFSAVTLSGELGQAERNQAMQALRDGRARVCVATDVA 303

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG------------KAFTLVAKED 353
           ARG+D+P +  V + D+P+ AE   HR GRTGRAGR G            KA  L+A+  
Sbjct: 304 ARGIDLPGLALVIHADLPSDAETLQHRSGRTGRAGRKGISVLLVPISRRRKAERLLAEAR 363

Query: 354 IK-------HIDAIEKLIEKKV--------DWLNGDLSSLNPPLEK-----IDIAQHNHA 393
           I+         DAI KL E ++        +    DL++    LEK     I  A     
Sbjct: 364 IRAEWGGTPSADAIRKLDEDRLLTDPVLAQEPGEDDLAAARSLLEKHSPETIAAALARLY 423

Query: 394 RKNNPIPQK--STGF--DRRKKNYSSQKSHIPLKESEKISK----LQQDI-QENDADSLG 444
           R   P P+     GF  D +     + K   P KE ++ S        D+ + N+AD   
Sbjct: 424 RSRLPAPEDVFDPGFGPDPKAGKDFAGKERTPRKERDQASGPMVWFHMDVGRRNNAD--- 480

Query: 445 FRGNMPAFMLPK--NRGKLN 462
                P ++LP    RGK+ 
Sbjct: 481 -----PKWILPLLCRRGKIT 495


>gi|291406389|ref|XP_002719529.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 2
           [Oryctolagus cuniculus]
          Length = 544

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 117/324 (36%), Positives = 178/324 (54%), Gaps = 14/324 (4%)

Query: 51  KTASFVLPMLT------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA 104
           +T S++LP +        LE+G      P  L+L PTRELA QV     +Y +   L   
Sbjct: 74  ETLSYLLPAIVHINHQPFLERGDG----PICLVLAPTRELAQQVQQVAAEYCRACRLKST 129

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
            + GG P   Q + LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF 
Sbjct: 130 CIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFE 189

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFV 222
           P I+ I   +   RQTL++SAT   E+++++E+FL++   I +     S+    ++   V
Sbjct: 190 PQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDV 249

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
               +  +K   L + + S+   K  I+F   K+    L   + + G+    IHG+  Q+
Sbjct: 250 CHDVEKDEKLIRLMEEIMSEKENKT-IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQ 308

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R  +L+ FK G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + 
Sbjct: 309 ERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKT 368

Query: 343 GKAFTLVAKEDIKHI-DAIEKLIE 365
           G A+T     +IK + D I  L E
Sbjct: 369 GTAYTFFTPNNIKQVSDLISVLRE 392


>gi|115400041|ref|XP_001215609.1| ATP-dependent rRNA helicase RRP3 [Aspergillus terreus NIH2624]
 gi|114191275|gb|EAU32975.1| ATP-dependent rRNA helicase RRP3 [Aspergillus terreus NIH2624]
          Length = 360

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 111/296 (37%), Positives = 171/296 (57%), Gaps = 5/296 (1%)

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
           +LIL PTRELA Q+A   E  G   ++   LLIGG+   +Q   L +   V++ TPGR+L
Sbjct: 14  SLILAPTRELAQQIAHTVEALGARISVRCTLLIGGMDMISQAIALGKKPHVIVATPGRLL 73

Query: 135 DHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193
           DH    K   +  ++ LV+DEADR+LD+ F P +  +  L+P  R+T LFSATM+ +++ 
Sbjct: 74  DHLENTKGFSLRTLKYLVLDEADRLLDLDFGPILDKLLRLLP-KRKTYLFSATMSSKVES 132

Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
           +    L +P R+ V+T + TA  +   ++  +  +  K   L  LL  +   + GIIF  
Sbjct: 133 LQRASLSDPVRVSVSTKNQTASKLLQSYL--FIPHKFKDFYLVYLLNER-AGQMGIIFTR 189

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
                  L   L   GF    IHG + Q +R+  L+ F+  +  L++A+D+AARGLDIP 
Sbjct: 190 TVHETQRLSIMLRNLGFPAIPIHGQLSQSARLASLNKFRARSRNLLIATDVAARGLDIPA 249

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           V +V N+D+P  ++ YIHR+GRT RAG+ G AF+ V + +++    IE  + KKV+
Sbjct: 250 VDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVTQYEVELWLRIEDALGKKVE 305


>gi|149203654|ref|ZP_01880623.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius sp. TM1035]
 gi|149142771|gb|EDM30813.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius sp. TM1035]
          Length = 759

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 117/364 (32%), Positives = 190/364 (52%), Gaps = 6/364 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P +  A+   GY   TP+Q       L   D+   AQTG+GKT  F L +   L  G  R
Sbjct: 4   PALSNALAARGYETLTPVQEAVTDPALSGSDLLVSAQTGSGKTVGFGLAIAPTLLGGEDR 63

Query: 70  VRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           +         I+ PTRELA QV              +   +GG+    + + LERGA ++
Sbjct: 64  LPPAAAPLALIVAPTRELALQVMRELSWLYAEAGARLVTCVGGMDARDERRALERGAHIV 123

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+ DH NRG L M ++  +V+DEAD MLD+GF   ++ + +  P  R+TL+FSAT
Sbjct: 124 VGTPGRLCDHINRGALDMTSLRAIVLDEADEMLDLGFREDLEFMLAAAPEDRRTLMFSAT 183

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
           +   + K++E F ++ +R+   T +     I +  +    Q ++   +   LL+  D  +
Sbjct: 184 VPPMIAKLAEKFQRDAQRVTTLTGAKQHADIAYQALTVSPQDAEGAVI--NLLRYHDA-Q 240

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           N I+F N +  V  L   L  +GF+V ++ G + Q  R   L   ++G  ++ VA+D+AA
Sbjct: 241 NAIVFANTRAMVARLTARLSNRGFAVVSLSGELSQSERTHALQAMRDGRARVCVATDVAA 300

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RG+D+P++  V + ++P  +E  +HR GRTGRAGR G +  +V  +     + + K  + 
Sbjct: 301 RGIDLPNLDLVVHAELPTNSEGLLHRSGRTGRAGRKGISALIVPLKSANKAERLLKFAKI 360

Query: 367 KVDW 370
             +W
Sbjct: 361 TAEW 364


>gi|68490782|ref|XP_710786.1| potential DEAD box RNA helicase [Candida albicans SC5314]
 gi|68490809|ref|XP_710773.1| potential DEAD box RNA helicase [Candida albicans SC5314]
 gi|46432016|gb|EAK91525.1| potential DEAD box RNA helicase [Candida albicans SC5314]
 gi|46432030|gb|EAK91538.1| potential DEAD box RNA helicase [Candida albicans SC5314]
          Length = 496

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 135/433 (31%), Positives = 226/433 (52%), Gaps = 26/433 (6%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKG 66
           ++ KV+  ++D  +V+PTPIQ ++IP+ L   D+   A TG+GKT +F++P++  IL K 
Sbjct: 56  INKKVLSNLIDNEFVEPTPIQCESIPITLNNRDLIACAPTGSGKTLAFLIPLVQQILSKN 115

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLERGA-D 124
            ++    R LI+ PT ELA Q+    E   +    + VA+L   +  +  N  ++    D
Sbjct: 116 VSKNHGIRGLIISPTNELAVQIFQELEIITRGCKQINVAILSKQLASKLNNNIIKSSKYD 175

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV--PFTRQTLL 182
           +++ TP R++D   +G + ++ IE L+IDEAD++ D GF      I +    P  R+++ 
Sbjct: 176 IIVSTPLRLIDVVKQGNMDLSKIEQLIIDEADKLFDHGFAEQTDEILTHCTNPKIRKSI- 234

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +++++ + +++P RI +    + + TI+   V T  +  K  A+ +Q++Q  
Sbjct: 235 FSATIPSSVEEMAHSIMKDPLRIIIGHKEAASNTIDQKLVFTGNEQGKLLAI-RQMIQQG 293

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     IIF         L H L     +V  IH     + R +++  FK G I +++ +
Sbjct: 294 EFKPPIIIFLQSITRAKALFHELLYDRLNVDVIHAERTPKQREEVIKRFKNGDIWVLITT 353

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ ARG+D   V  V N+DVP  A+ Y+HRIGRTGR G+ GKA T   KED K I  I  
Sbjct: 354 DVLARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDDKAIKPILN 413

Query: 363 LIEKK------VDWLNGDLSSLNPPLEKIDIAQHNHARKN-NPIP----------QKSTG 405
           ++++         W+  D+  L+   EK  I  H   RK  + +P          Q    
Sbjct: 414 VMKQSGCNDGYSQWME-DMGKLSKK-EKKQIKTHEIQRKKISTVPKVIKQKRKQRQDMIA 471

Query: 406 FDRRKKNYSSQKS 418
             +R+K  S Q+S
Sbjct: 472 ASKRRKQESKQES 484


>gi|161618112|ref|YP_001591999.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella canis ATCC
           23365]
 gi|260567233|ref|ZP_05837703.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
 gi|161334923|gb|ABX61228.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella canis ATCC
           23365]
 gi|260156751|gb|EEW91831.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
          Length = 626

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 119/347 (34%), Positives = 189/347 (54%), Gaps = 10/347 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEK- 65
           ++P +  A+   GY   T +Q   +       D+   AQTG+GKT +F L M  TILE  
Sbjct: 7   IAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMANTILEDE 66

Query: 66  ---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
              G A    P  +I+ PTRELA QV    E    +    +A  +GG+    + + LERG
Sbjct: 67  LRFGDAGA--PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALERG 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TP R+ DH  R  L M+ +  +V+DEAD MLDMGF   ++ I    P  R+TL+
Sbjct: 125 SHIVVGTPRRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDRRTLM 184

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++++ F  N  RI V + +S    I++  +     + +  A++  LL   
Sbjct: 185 FSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPV-PPHERDHAIINTLLYYD 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +N IIFC+ ++ V ++   L  +GF+V A+ G + Q  R   L   ++G  ++ VA+
Sbjct: 244 S--QNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVAT 301

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARG+D+P++  V + D+P   +  +HR GRTGRAGR G    +V
Sbjct: 302 DVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVV 348


>gi|19387221|gb|AAL87141.1|AF479822_1 DEAD box RNA helicase Vasa [Oryzias latipes]
          Length = 396

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 118/317 (37%), Positives = 185/317 (58%), Gaps = 18/317 (5%)

Query: 45  AQTGTGKTASFVLPMLT-ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKN 98
           AQTG+GKTA+F+LP+L  ++  G A  R      P  +I+ PTREL  Q+     K+   
Sbjct: 4   AQTGSGKTAAFLLPILQQLMADGVAASRFSGIQEPEAVIVAPTRELINQIYQEARKFSFG 63

Query: 99  YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
             +   ++ GG+    Q +++E+G +VL  T GR+LD   RGK+ ++ +  LV+DEADRM
Sbjct: 64  TCVRPVVVYGGVNTGYQMREIEKGCNVLCGTTGRMLDLIGRGKVGLSKVRHLVLDEADRM 123

Query: 159 LDMGFIPYIQNITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA 214
           LDMGF P ++ +           RQTL+FSAT  +++Q+++ +FL+             A
Sbjct: 124 LDMGFEPDMRRLVGSPGMPSKEERQTLMFSATFPEDIQRLAADFLKVDYLFVAVGVVGGA 183

Query: 215 ET-IEHCFVATYAQYSKKCALLQQL--LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
            T +E  F+    +++K+  LL  L  + S+ TM    +F   K+    +   L ++   
Sbjct: 184 VTDVEQTFLQV-TKFNKREQLLDLLRTIGSERTM----VFVETKRQADFIAAFLCQEKVP 238

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
             +IHG+ +QR R K L++F+ G   ++VA+ +A+RGLDIPDV HV NFD+PN  ++Y+H
Sbjct: 239 TTSIHGDREQREREKALADFRSGKCPVLVATSVASRGLDIPDVQHVVNFDLPNTIDDYVH 298

Query: 332 RIGRTGRAGRHGKAFTL 348
           RIGRTGR G  G+A + 
Sbjct: 299 RIGRTGRCGNTGRAVSF 315


>gi|332202625|gb|EGJ16694.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA41317]
          Length = 461

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 193/368 (52%), Gaps = 13/368 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   + ++ V ++  +GG     Q +K
Sbjct: 61  QQLDEASDSVQ---AVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ- 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T   + K   + Q 
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKG-HDKNAQIYQL 236

Query: 237 -QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            QL+Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  +   
Sbjct: 237 TQLMQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLD 292

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D  
Sbjct: 293 FEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDS 352

Query: 356 HIDAIEKL 363
            I  +EKL
Sbjct: 353 DIRELEKL 360


>gi|2245018|emb|CAB10438.1| RNA helicase like protein [Arabidopsis thaliana]
 gi|7268413|emb|CAB78705.1| RNA helicase like protein [Arabidopsis thaliana]
          Length = 683

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 127/387 (32%), Positives = 191/387 (49%), Gaps = 63/387 (16%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGK----------- 51
           F +L LS  ++ A    GY KPTPIQ++ IP   +  D+C  A TG+GK           
Sbjct: 169 FMELNLSRPLLRACETLGYKKPTPIQVQFIPQ--EWRDLCASAITGSGKVSTRLMVLCNT 226

Query: 52  ---------TASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT 102
                    TA+F LP L  L     RV   R LIL PTRELA Q+    +   +  ++ 
Sbjct: 227 EILFRYLTNTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIK 286

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDM 161
             L++GG+    Q   L    D+++ TPGR++DH  N   + ++++ +L++DEADR+L  
Sbjct: 287 CGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQT 346

Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN-----TPSSTAET 216
           GF   I  +  L P  RQT+LFSATMT+E++++ +  L  P R+  +      P  T E 
Sbjct: 347 GFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEY 406

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
           +   FV + A  +K+ A                   ++ K +  L       G     +H
Sbjct: 407 LREFFVPSCASGTKQAA-------------------HRLKILFGLA------GLKAAELH 441

Query: 277 GNIDQRSRMKI----------LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
           GN+ Q  R+ +          L  F++  +  ++A+D+AARGLDI  V  V N+  P   
Sbjct: 442 GNLTQAQRLDVRNLGTSALFSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREI 501

Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKED 353
           ++Y+HR+GRT RAGR G A T V   D
Sbjct: 502 DSYVHRVGRTARAGREGYAVTFVTDSD 528


>gi|195455578|ref|XP_002074783.1| GK23245 [Drosophila willistoni]
 gi|194170868|gb|EDW85769.1| GK23245 [Drosophila willistoni]
          Length = 506

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 143/442 (32%), Positives = 227/442 (51%), Gaps = 16/442 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +   +   G    TPIQ   IP +L   D  G A+TG+GKT +F LP   I
Sbjct: 9   FQALGLRPWLAKQLTKVGLKDATPIQKSCIPAILSGQDCIGAAKTGSGKTFAFALP---I 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LEK          L+L PT ELA Q+++ F   G+   + V ++ GG     +++KL + 
Sbjct: 66  LEKLSEEPVSHFALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQR 125

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++  PGR+ DH         +N++ LV+DEADRML+  F   +  I   +P  RQ L
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDASLAIIEKSLPKARQNL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQLL 239
            FSATM D ++  S   + N +  E +  S  +T +T++  ++   A Y +   L++ L 
Sbjct: 186 FFSATMKDFIKDSSIFPIAN-ECFEWSEESQVATVDTLDQRYLLC-ADYDRDMVLIEALR 243

Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + +D   N   +IF N KK    L  +L+        +HG + Q+ R+  +S FK   I+
Sbjct: 244 KYRDENPNSNVMIFTNTKKYCQLLSMTLQNLDIENVCLHGFMRQKERVAAISRFKSNHIR 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKH 356
            ++A+D+AARGLDIP V  V N  +P   + YIHR+GRT RAGR G + ++     D++ 
Sbjct: 304 TLIATDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRSGMSISIFRFPRDLEL 363

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           + +IE  I  K+     D       +E+I   Q N  R+ + +   +  FD R +NY  +
Sbjct: 364 LGSIEDEINTKLQEHPIDQRM----VERI-FMQVNVTRRESEMKLDNNDFDERAQNYRRK 418

Query: 417 KSHIPLKESEKISKLQQDIQEN 438
              I  K+ +++  L +  Q++
Sbjct: 419 TWIIEGKDPDQMEALYRKKQKD 440


>gi|89054065|ref|YP_509516.1| DEAD/DEAH box helicase-like [Jannaschia sp. CCS1]
 gi|88863614|gb|ABD54491.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1]
          Length = 706

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 113/338 (33%), Positives = 182/338 (53%), Gaps = 7/338 (2%)

Query: 16  VLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF---VLPMLTILEKGRARVR 71
            LDA GY   TP+Q       L   D+   AQTG+GKT  F   + P L    +      
Sbjct: 8   ALDAQGYDTLTPVQQAVTDPDLTGKDLLVSAQTGSGKTLGFGLAIAPQLFGEAEAFGAAG 67

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
            P  L++ PTRELA QV             T+A  +GG+    + + L RGA +++ TPG
Sbjct: 68  APLALVIAPTRELAMQVKRELSWLFAQAGATLASTVGGMDMRDERRALARGAHIVVATPG 127

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+ DH  RG + +++++ +V+DEAD MLD+GF   ++ I    P  RQTL+FSAT+   +
Sbjct: 128 RLKDHIMRGSIDLSSLKAVVLDEADEMLDLGFREDLEFILDTSPADRQTLMFSATVPAAI 187

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
            ++++N+ ++  R+   T       IE+  +   A+  +   +   +L+  +   N I+F
Sbjct: 188 ARLAQNYQKDAVRVATTTGEKQHSDIEYRALTVSARDGENAII--NVLRFYEA-PNAIVF 244

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           CN +  V  +   L  +GFSV A+ G + Q  R   L   ++G  ++ VA+D+AARG+D+
Sbjct: 245 CNTRATVNRMTTRLSNRGFSVVALSGELTQSERTNALQAMRDGRARVCVATDVAARGIDL 304

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           P++  V + ++P   +  +HR GRTGRAGR G +  +V
Sbjct: 305 PNLELVIHAELPTNQDTLLHRSGRTGRAGRKGVSALIV 342


>gi|86211175|gb|ABC87271.1| vasa-like protein [Macrobrachium rosenbergii]
          Length = 710

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 134/404 (33%), Positives = 210/404 (51%), Gaps = 35/404 (8%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRA-----RVRMPRTLILE 79
           P+Q   IP      D+   AQTG+GKTA+F+LP+L  ++  G A      ++ P  +I+ 
Sbjct: 305 PVQKCGIPR--GGGDLMACAQTGSGKTAAFLLPILQQLMADGVAASSFVELQEPEAIIVA 362

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTREL  Q+     K+     +   ++ GG+    Q +++ +G +++  TPGR+LD   R
Sbjct: 363 PTRELINQIFLEARKFAYGTCVRPVVVYGGVNTGFQLREISKGCNIVCGTPGRLLDVIQR 422

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITS---LVP-FTRQTLLFSATMTDELQKVS 195
           G + +  +  LV+DEADRMLDMGF P ++ + +   + P   RQTLLFSAT   ++QK++
Sbjct: 423 GWIGLTKLRYLVLDEADRMLDMGFEPDMRRLVASPGMPPKENRQTLLFSATYPQDIQKLA 482

Query: 196 ENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN--GIIFC 252
            +FL+     + V         +E  FV    +YSK+    +QLL    T+ N   ++F 
Sbjct: 483 ADFLKTDYLFLAVGIVGGACSDVEQTFVQV-TKYSKR----EQLLDFLKTIGNERTMVFV 537

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             K+    +   L ++     +IHG+ +QR R + L++FK G   ++VA+ +AARGLDIP
Sbjct: 538 ETKRQADFIATFLCQEELPTTSIHGDREQREREQALADFKAGKCPILVATSVAARGLDIP 597

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA-----IEKLIEKK 367
           +V HV NFD+P   + Y+HRIGRTGR G  G+A +    E    + A     + K  ++ 
Sbjct: 598 EVQHVVNFDLPKNIDEYVHRIGRTGRCGNIGRAVSFYDPEVDSQLAASLVTILSKAQQEV 657

Query: 368 VDWLN--------GDLSSLNPPLEKIDI--AQHNHARKNNPIPQ 401
             WL            S  N      D   +Q     +  P+PQ
Sbjct: 658 PSWLEESAFSGGATSFSQANKSFASSDSRKSQQAGCERRQPVPQ 701


>gi|268568714|ref|XP_002640327.1| C. briggsae CBR-GLH-1 protein [Caenorhabditis briggsae]
          Length = 795

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 129/374 (34%), Positives = 196/374 (52%), Gaps = 33/374 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+  ++  V +AGY K TPIQ   +PL+   HD+   AQTG+GKTA+F+LP+++ 
Sbjct: 376 FEDAKLTETMLKNVRNAGYNKTTPIQQFALPLIRDGHDIMACAQTGSGKTAAFLLPIMSR 435

Query: 63  LE-------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           L         G      PR +IL PTRELA Q+ +   K+     + +  + GG+     
Sbjct: 436 LTDESDLNTAGEGGC-YPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYN 494

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD-MGFIPYIQNITSLV 174
             ++ERGA +++ T GRI      G + ++     V+DEADRM+D MGF   I+ I    
Sbjct: 495 KSQIERGATIVVGTVGRIKHFCEEGTIKLDKCRYFVLDEADRMIDAMGFGDDIRTIVGYE 554

Query: 175 PF----TRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETI----EHCFVATY 225
                  RQTL+FSAT  D +Q+ +  FL Q+   I ++   +  + +    E C +   
Sbjct: 555 GMPQKENRQTLMFSATFPDSVQEAAREFLRQDYSMITIDKIGAANKCVLQEFEQCEMC-- 612

Query: 226 AQYSKKCALLQQL---LQSQDTMKNG-------IIFCNQKKNVVNLCHSLEKQGFSVCAI 275
               KK  LL+ L   L+S  T+ N        I+F  ++     L   L         I
Sbjct: 613 ---DKKDKLLEMLGVDLESYTTVTNADVYTKKTIVFVARRALADTLAAVLSTAQIPAITI 669

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG  +QR R + L +F+ G+  +++A+ +A RGLDI  V HV N+D+P+  ++YIHRIGR
Sbjct: 670 HGAREQRERSEALRHFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGR 729

Query: 336 TGRAGRHGKAFTLV 349
           TGR G  G+A + +
Sbjct: 730 TGRVGNSGRATSFI 743


>gi|268565311|ref|XP_002639404.1| Hypothetical protein CBG03992 [Caenorhabditis briggsae]
 gi|187036185|emb|CAP24791.1| hypothetical protein CBG_03992 [Caenorhabditis briggsae AF16]
          Length = 750

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 115/358 (32%), Positives = 195/358 (54%), Gaps = 20/358 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS + +  + +  YVKPT IQ  TI   L   DV G A+TG+GKT + V+P+L  
Sbjct: 78  FEDFPLSWRTLEGLKENEYVKPTEIQRDTIAHSLTGADVVGAAKTGSGKTLALVIPILEA 137

Query: 63  LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     RV+         L++ PTRELA Q        GK++  +  L+IGG     +  
Sbjct: 138 L----WRVKWSPEYGLGALVISPTRELALQTFSTINAVGKHHGFSCGLVIGGSEVAFERN 193

Query: 118 KLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++  G ++++CTPGR+L H +  + +  ++++ILV+DEADRMLDMGF   + +I + +P 
Sbjct: 194 RIS-GINIIVCTPGRLLQHMDENEQMNCDSLQILVLDEADRMLDMGFSKQLNSIINNLPA 252

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCAL 234
            RQTLLFSAT T  ++ +S     +P  + V  N+ ++T + ++  +V    +   K   
Sbjct: 253 ERQTLLFSATQTRNVKDLSRVCTNDPVFVSVHENSAAATPDNLKQSYVVVEEEI--KINT 310

Query: 235 LQQLLQSQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
           L   +++    K  ++F   C Q + +  +   L + G  V  + G ++Q+ R++  + +
Sbjct: 311 LWSFIEAH-KKKKSLVFVSSCKQARFLTEVFSQL-RPGLPVMGLWGTMNQKKRIETFTKY 368

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            E    +++A+D+A+RGLD   +  V   D P + ++YIHR+GR+ R    G +  +V
Sbjct: 369 DESKAAVLIATDVASRGLDFERIDWVIQVDCPAQIDDYIHRVGRSARMEESGNSLLMV 426


>gi|312083163|ref|XP_003143746.1| RNA-dependent helicase [Loa loa]
 gi|307761088|gb|EFO20322.1| RNA-dependent helicase [Loa loa]
          Length = 403

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 181/346 (52%), Gaps = 34/346 (9%)

Query: 55  FVLPML--TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
           F+LP +  T  +  R   + P  L+L PTRELA QV +  + Y +   L++  L GG P 
Sbjct: 1   FILPAIVHTAGQPPRGHQKSPSVLVLLPTRELAQQVEEVAKDYCRATELSITCLFGGAPK 60

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
            AQ + LERG D++I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I S
Sbjct: 61  AAQARDLERGVDIIIATPGRLMDFLEVGKTDLRRCTYLVLDEADRMLDMGFEPQIRKIVS 120

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK- 231
            +   RQTL+FSAT   +++K++ +FL +   + V +   +A       V    + +K+ 
Sbjct: 121 QIRPDRQTLMFSATWPKDVRKLAMDFLADAAHLNVGSLELSANHNITQIVEIIDESNKQQ 180

Query: 232 --CALLQQLLQSQ-----------DTMKNG------------------IIFCNQKKNVVN 260
              A+L  ++  +           +T +N                   IIF   K+   +
Sbjct: 181 RLMAILSDIMNKESKSISTDNYKGNTWRNNSQNRMSRSSDELWEDCKTIIFVETKRKADD 240

Query: 261 LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNF 320
           L   + + G+    IHG+  Q  R   LS F+ G   +++A+D+AARGLD+ D+ +V NF
Sbjct: 241 LTRWMRRDGWPALCIHGDKGQSERDWALSEFRSGKTPILLATDVAARGLDVDDIKYVINF 300

Query: 321 DVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           D  N +E+Y+HRIGRTGR  + G A+T     +      + K++E+
Sbjct: 301 DYSNNSEDYVHRIGRTGRRDKTGIAYTFFTYANAPKAKDLIKVLEE 346


>gi|156395780|ref|XP_001637288.1| predicted protein [Nematostella vectensis]
 gi|156224399|gb|EDO45225.1| predicted protein [Nematostella vectensis]
          Length = 412

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 128/382 (33%), Positives = 207/382 (54%), Gaps = 11/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++  +   G+ KP+ IQ + I    Q  DV   AQ+GTGKTA+F + +L  
Sbjct: 35  FDDMNLKEALLRGIYAYGFEKPSAIQQRAIRPCCQARDVIAQAQSGTGKTATFAISILQE 94

Query: 63  LE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           ++   K +      + L+L PTRELA Q+       G   ++     IGG        KL
Sbjct: 95  IDTNYKDKNGCDCCQALVLAPTRELAQQIQKVVLALGDYMHVKCHACIGGTNVREDRMKL 154

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G  V++ TPGR+ D  NRG L   +I++ V+DEAD ML  GF   I ++ + +P + Q
Sbjct: 155 EEGVHVVVGTPGRVFDMINRGVLNTRDIKLFVLDEADEMLSRGFKDQIYDVFTRLPTSVQ 214

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQ 236
            +L SATM  ++ +V+  F+++  RI V     T E I+  FV    +  K    C L +
Sbjct: 215 VVLLSATMPTDVLEVTNKFMRDVVRILVKREEVTLEGIKQFFVLVEKEDWKLDTLCDLYE 274

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L     T+   +IF N ++ V  L   + ++  +V ++HG++ Q+ R  I+  F+ G+ 
Sbjct: 275 TL-----TITQAVIFANTRRKVDWLAAKMTEKDHTVSSMHGDMSQKERDIIMKEFRSGSS 329

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++ +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V  +D++ 
Sbjct: 330 RVLITTDLLARGIDVHQVSLVINYDLPSNRENYIHRIGRGGRFGRKGAAINFVTNDDVRM 389

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
           +  IE+    K++ +  +++ L
Sbjct: 390 LKDIEQYYNTKIEEMPMNVADL 411


>gi|76798781|ref|ZP_00780996.1| ATP-dependent RNA helicase [Streptococcus agalactiae 18RS21]
 gi|76585865|gb|EAO62408.1| ATP-dependent RNA helicase [Streptococcus agalactiae 18RS21]
          Length = 359

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 125/365 (34%), Positives = 190/365 (52%), Gaps = 11/365 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D    P +  A+ +  +V PT +Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDFNFKPYIQRALDELKFVDPTDVQAKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKK 118
             L++    V++   +I  P+REL  Q+    ++  ++    + V   +GG     Q +K
Sbjct: 61  EKLDESSDDVQV---VITAPSRELGTQIYQATKQIAEHSEQEIRVVNYVGGTDKLRQIEK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+     ++I TPGRI D    G L ++     V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LKVSQPHIVIGTPGRIYDLVKSGDLAIHKAHTFVVDEADMTLDMGFLDTVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL-LQ 236
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  ++T  +      L L 
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEKIKTATVIADTIDNWLLSTKGRDKNAQILELS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +L+Q    M    IF N K+    L   L   G  V  IHG I  R R +I++  K    
Sbjct: 238 KLMQPYLAM----IFVNTKERADELHSYLSSNGLKVAKIHGGIAPRERKRIMNQVKNLEF 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   
Sbjct: 294 EYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSD 353

Query: 357 IDAIE 361
           I  +E
Sbjct: 354 IRELE 358


>gi|119191710|ref|XP_001246461.1| hypothetical protein CIMG_00232 [Coccidioides immitis RS]
 gi|118575177|sp|Q1EB31|DBP4_COCIM RecName: Full=ATP-dependent RNA helicase DBP4
          Length = 806

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 124/392 (31%), Positives = 215/392 (54%), Gaps = 26/392 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61
           F++L LS   +  +  + +   T IQ + +P  ++  D+ G A+TG+GKT +F++P+L  
Sbjct: 50  FSELPLSDATLQGLSASHFKTLTDIQSRAVPHAIKGRDILGAAKTGSGKTLAFLVPVLEN 109

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  K          LIL PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L R
Sbjct: 110 LYRKQWTEYDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLQEEQERLGR 169

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L H ++       +I++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 170 -MNILVCTPGRMLQHMDQTAAFDTAHIQMLVLDEADRIMDMGFQSTVDAIVEHLPKERQT 228

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYSKKCALLQQL 238
           +LFSAT T ++  ++   L++P+ I V+  +S+A   +++  +V T     +K   L   
Sbjct: 229 MLFSATQTKKVSDLARLSLRDPEYISVHEAASSATPASLQQHYVVT--PLPEKLDTLWSF 286

Query: 239 LQSQDTMKNGI-IFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++  +T+K+ I +F +  K V  +  +    + G  +  +HG   Q +R+ I S F    
Sbjct: 287 IR--NTLKSKILVFFSSSKQVRFVYEAFRHMQPGIPLLHLHGRQKQSARIDITSKFSRAK 344

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
              + ++D+AARGLD P V  V   D P  A+ YIHR+GRT R  R G+A   +   + +
Sbjct: 345 YSCLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEE 404

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
            +  +++L +KK+            P+E+I+I
Sbjct: 405 GM--LKRLEQKKI------------PIERINI 422


>gi|288916173|ref|ZP_06410553.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
 gi|288352364|gb|EFC86561.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
          Length = 479

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 111/333 (33%), Positives = 177/333 (53%), Gaps = 7/333 (2%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK-GRARVR 71
           + A+ D   + P P+Q  T+P VL   +V G A+TG+GKT +F LP+L  L   G AR R
Sbjct: 1   MAALADRKILAPFPVQAATLPDVLAGENVLGRARTGSGKTLAFGLPLLARLSATGPARPR 60

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
            PR LIL PTRELA QV D      +   L +  + GG     Q   + RG  +++ TPG
Sbjct: 61  QPRGLILVPTRELAQQVNDVLAPLTRALGLWMTPVYGGTSISRQISAMRRGVHLVVATPG 120

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+ D   R   L++ IEI V+DEAD M D+GF+P ++ +  + P   Q LLFSAT+  E+
Sbjct: 121 RLTDLIERDACLLDEIEITVLDEADFMCDLGFLPAVKALLDMTPSGSQRLLFSATLDREV 180

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQSQDTMKNGII 250
           + +  ++L  P  + ++   S   T+  H       +   + A L+ +          ++
Sbjct: 181 EVLVRSYLPEPVLVAIDPEVSQVSTLARHAL-----ESVDRAAQLRLVTALAGGAGRTLV 235

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F   +++   +  +L + G     +HG + Q +R + L+ F +G  +++VA+D+AARG+ 
Sbjct: 236 FVRTQRDADRVAQALTEAGVPAEPLHGGMPQGARTRALAGFTDGFYRVLVATDVAARGIH 295

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           +  +  V +   P+  + Y HR GRT RAG  G
Sbjct: 296 VDGISLVLHLGPPDDPKTYQHRGGRTARAGADG 328


>gi|255715335|ref|XP_002553949.1| KLTH0E10890p [Lachancea thermotolerans]
 gi|238935331|emb|CAR23512.1| KLTH0E10890p [Lachancea thermotolerans]
          Length = 589

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 118/345 (34%), Positives = 182/345 (52%), Gaps = 17/345 (4%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR-----ARVRMPRT 75
           Y++PTPIQ  TIP VL   D  G+A TG+GKT +F++P L  L          ++  P  
Sbjct: 207 YLEPTPIQRATIPNVLNGRDFVGVAATGSGKTLAFLIPPLCQLNNTPPLNDITKMDGPSA 266

Query: 76  LILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           LIL PTRELA Q+     K  K  +    V  L+GG   E  +  L  G D+L+ TPGR+
Sbjct: 267 LILAPTRELAQQIEAEANKVVKFLHRPTKVVSLVGGHSVEEISYSLSHGCDILVATPGRL 326

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQTLLFSATMTDEL 191
           +D      L++  +  L++DEADRM+D GF   +  I +       RQT++F+ATM+  +
Sbjct: 327 IDCLESNILVLQQVRTLILDEADRMIDFGFEDQLTTILARTESVKGRQTMMFTATMSSTI 386

Query: 192 QKVSENFLQNPKRIEVNTPSSTAET--IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
           ++++  +L  P  + V +  + A+   +     +   ++S+ C  +    +S       +
Sbjct: 387 ERIANGYLNKPAYVRVGSQDTKAQIKQVVQYLPSEEQRFSRLCRDVLPRFRSPI-----M 441

Query: 250 IFCNQKKNVVNLCHSLEKQG-FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           IF N K+    L      +  + V  +HG+  Q  R   L+  + G   +M+A+D+A RG
Sbjct: 442 IFINYKRTADWLAAKFSSETRYRVTTLHGSKSQEQREHSLNLLRSGKADIMIATDVAGRG 501

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +DIP+V  V NF +    E YIHRIGRTGRAG+ G A T + + D
Sbjct: 502 IDIPNVSLVVNFQMCTSFEGYIHRIGRTGRAGKSGCALTFLTERD 546


>gi|289614196|emb|CBI58963.1| unnamed protein product [Sordaria macrospora]
          Length = 584

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 119/362 (32%), Positives = 189/362 (52%), Gaps = 7/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +D+ D      ++  + +AG+ KP+PIQ + IP+ L   D+   A+ GTGKTA+F++P L
Sbjct: 45  LDWEDFIHDRDLLMGIFEAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFLIPAL 104

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              EK   +V   + LIL PTRELA Q +   +  GK+  + V +  GG        +L+
Sbjct: 105 ---EKINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIVRLQ 161

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +    ++   + ++DEAD++L   F P I+ +    P  RQ 
Sbjct: 162 DPVHIVVGTPGRILDLAGKQVADLSECPMFIMDEADKLLSQEFTPVIEQLLQFHPKDRQV 221

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++  S+  + +P  I +     T   I   +   + +  +K   L  L  
Sbjct: 222 MLFSATFPLSVKDFSDKNMTSPYEINL-MDELTLRGITQYYA--FVEEKQKVHCLNTLF- 277

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q++R ++  +F+ G  + +V
Sbjct: 278 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMAQQARNRVFHDFRNGVCRNLV 337

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 338 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNI 397

Query: 361 EK 362
           E+
Sbjct: 398 ER 399


>gi|260947074|ref|XP_002617834.1| hypothetical protein CLUG_01293 [Clavispora lusitaniae ATCC 42720]
 gi|238847706|gb|EEQ37170.1| hypothetical protein CLUG_01293 [Clavispora lusitaniae ATCC 42720]
          Length = 896

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 125/369 (33%), Positives = 196/369 (53%), Gaps = 27/369 (7%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ LG S  ++  + +   Y KPTPIQ + +P+++   D+  IA+TG+GKT +FVLPML 
Sbjct: 299 WSQLGFSSTIMSLIEEKLEYKKPTPIQCQALPIIMSGRDILSIAKTGSGKTMAFVLPMLR 358

Query: 62  ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  L KG      P  L+L PTRELA Q+      + K   ++     GG   E Q
Sbjct: 359 HVQEQPPLSKGDG----PIALLLSPTRELALQIFKQLSIFTKKLGISACCCYGGSSIELQ 414

Query: 116 NKKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITS 172
             +L++G  V++ TPGR++D    N G++  +  +  +V+DEADRM D GF P +  I S
Sbjct: 415 IAELKKGCQVVVSTPGRLIDLLAANGGRVCNLRRVTYVVLDEADRMFDFGFEPQVNKIFS 474

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH---CFVAT----- 224
            V   RQ++LFSAT   +++ +++  L +P ++ V   S  ++ I      F  T     
Sbjct: 475 QVRPDRQSILFSATFARKMEMLAKAILHDPIQVIVGGISVVSQEITQRVELFEVTENDNE 534

Query: 225 -YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
              +  K   LL+ L +   T K  +IF  ++ +   L   L  +      IHG  +Q  
Sbjct: 535 DTIEKRKFEKLLKVLKEFPSTKK--LIFVEKQDSADKLMVKLLTENIPSLTIHGGKEQID 592

Query: 284 RMKILSNFKE--GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R   + NF +    + +++A+ +AARGLD+  +G V N+D  N  E+Y+HR+GRTGRAG 
Sbjct: 593 RKYAIKNFSDNDSGVDVLIATSIAARGLDVKGLGLVVNYDPANHMEDYVHRVGRTGRAGN 652

Query: 342 HGKAFTLVA 350
            G A+T V 
Sbjct: 653 TGVAYTFVT 661


>gi|269796644|ref|YP_003316099.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269098829|gb|ACZ23265.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542]
          Length = 512

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 119/352 (33%), Positives = 184/352 (52%), Gaps = 6/352 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L   ++  + D G   P PIQ  T+   L+  DV G  +TG+GKT +F LP +T 
Sbjct: 13  FDDFALPAPIISYLADNGIAAPFPIQSATLGDTLEGRDVLGRGRTGSGKTLAFSLPTVTR 72

Query: 63  L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L  + GR R   PR L++ PTRELA Q+    E   K   L    + GG+    Q   L+
Sbjct: 73  LAADGGRRRPARPRGLVMCPTRELANQINATMEPLAKLLGLKTTTIFGGVAQSRQVTALQ 132

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D++I  PGR+ D   +G L ++++EI V+DEAD M D+GF+P ++ I    P   Q 
Sbjct: 133 GGVDIVIACPGRLEDLLGQGLLSLDDVEITVLDEADHMADLGFLPGVKRIMDRTPSKGQR 192

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ + + ++ + ++  P    V++  S   T+ H  +   A  + K  ++++L  
Sbjct: 193 LLFSATLDNGVDQLVKRYMDAPTSHSVDSADSHVSTMSH-HIFEVADAAAKRDVIRELAS 251

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D     ++F   K     L   L   G     +HGN+ Q +R + L  F  G ++++V
Sbjct: 252 GVDKR---VLFTRTKHQAKKLAKQLTADGIPAVDLHGNLGQGARERNLEAFSSGAVKVLV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           A+D+AARG+ + +V  V + D P   + Y HR GRT RAG  G   T++  E
Sbjct: 309 ATDIAARGIHVDEVSLVVHVDPPAEHKAYTHRSGRTARAGSGGDVVTIMLPE 360


>gi|189188460|ref|XP_001930569.1| ATP-dependent RNA helicase DBP8 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187972175|gb|EDU39674.1| ATP-dependent RNA helicase DBP8 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 514

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 138/434 (31%), Positives = 223/434 (51%), Gaps = 29/434 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L ++P +V ++      +PT IQ   IP +L+  D  G ++TGTGKT +F +P  
Sbjct: 84  LSFTSLNVAPWLVASLASMEIKRPTGIQASCIPEILKGKDCIGGSRTGTGKTVAFSVP-- 141

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL+K          +I+ PTRELA Q+ +  +      ++   L+ GG    +Q   L 
Sbjct: 142 -ILQKWSEDPSGIFAVIVTPTRELAIQIYEQVKAISAPQSMKPILITGGSDQRSQAIALA 200

Query: 121 RGADVLICTPGRILDHFNRGK----LLMNNIEILVIDEADRMLDMG---FIPYIQNITSL 173
               V+I TPGR+ +H           +  ++ +V DEADR+L  G    +P ++   S+
Sbjct: 201 SRPHVVIATPGRLAEHIRTSGEDTICGLRRVKFVVFDEADRLLAPGKGSMLPDLETCLSV 260

Query: 174 VP--FTRQTLLFSATMTDELQKVSENFLQNPKRI-----EVNTPS-STAETIEHCFVATY 225
           +P   +RQTLLF+AT+T E+  +     + P R+     EV+T   +    ++  ++ T 
Sbjct: 261 LPPKESRQTLLFTATVTPEVMALKHQ-PRAPGRLPIFVSEVDTEDLAIPPRLQQKYLQTP 319

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
             + K+C L   L    ++ K+ IIFCN+ K    L + L      V A+H  + Q  R+
Sbjct: 320 VTH-KECYLHVLLNTPVNSTKSVIIFCNRTKTATLLEYMLRLLDHRVTALHSGLKQSDRV 378

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L+ F+    +++VA+D+AARGLDIP+V  V NFDVP   ++YIHR+GRT RAGR G +
Sbjct: 379 SNLARFRAQAARILVATDVAARGLDIPEVALVINFDVPRDPDDYIHRVGRTARAGRVGTS 438

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS---------LNPPLEKIDIAQHNHARKN 396
            T + + D+  + AIE  + KK+D    +  S         L P  EK   A  +     
Sbjct: 439 ITFIGQRDVDLVLAIETRVGKKMDEFEEEGVSVEGRVLRDALKPVTEKKREAMLSIEEGR 498

Query: 397 NPIPQKSTGFDRRK 410
           + + ++ TG  +R+
Sbjct: 499 DVLGKRKTGMQKRR 512


>gi|224122544|ref|XP_002318863.1| predicted protein [Populus trichocarpa]
 gi|222859536|gb|EEE97083.1| predicted protein [Populus trichocarpa]
          Length = 652

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 125/339 (36%), Positives = 180/339 (53%), Gaps = 26/339 (7%)

Query: 26  PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV-------RMPRTLIL 78
           PIQ +T   +L   D+ G A+TG GKT +FVLP+L  L  G A+        R P  L+L
Sbjct: 88  PIQARTFEDILNGCDLVGRARTGQGKTLAFVLPILESLVNGPAKASRKTGYGRPPSVLVL 147

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QV ++F+ YG    L    + GG  ++ Q   L+RG D+++ TPGRI DH  
Sbjct: 148 LPTRELATQVFEDFKVYGGAVGLNSCCVYGGASYQPQEFALKRGVDIVVGTPGRIKDHIE 207

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--QTLLFSATMTDELQKVSE 196
           +G + ++ ++  V+DE+D ML MGF+  ++ I   V   R  QTLLFSAT+ D ++ +S 
Sbjct: 208 KGNIDLSLLKFRVLDESDEMLRMGFVEDVELILGKVEDVRKVQTLLFSATLPDWVKNISS 267

Query: 197 NFLQNPKR---IEVNTPSSTAETIEH----CFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
            FL+  K+   +  N     +  + H    C  A   Q      ++  ++    +    I
Sbjct: 268 RFLKPTKKTIDLVGNEKMKASTNVRHIVLPCSTAAMPQ------VIPDVISCYGSGGRTI 321

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           IF  ++++   L   L        A+HG I Q  R   LS F+ G    +VA+++AARGL
Sbjct: 322 IFTEKRESANELAGLLP----GARALHGEIQQSKREVTLSGFRSGKFLTLVATNVAARGL 377

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           DI DV  +   + PN  E YIHR GRTGRAG  G A  L
Sbjct: 378 DINDVQLIIQCEPPNDVEAYIHRSGRTGRAGNSGVAVML 416


>gi|300214777|gb|ADJ79193.1| ATP-dependent RNA helicase [Lactobacillus salivarius CECT 5713]
          Length = 440

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 194/368 (52%), Gaps = 15/368 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F        +  A+ +  + +PT +Q + IP +L+   V G +QTG+GKT +F+LP+  
Sbjct: 3   NFRGFNFKEYIYQALDEINFKEPTEVQARLIPTILKGKSVVGQSQTGSGKTHTFLLPIFQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKL 119
            L   +  V+    +I  P+RELA Q+ +  ++  K    N+ +   +GG   + Q +KL
Sbjct: 63  NLNAQKDEVQ---AVITTPSRELAYQIYEAAKQLAKFSPENIWIQNYVGGTDKQRQIEKL 119

Query: 120 E-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +     ++I TPGRILD      L ++N   LV+DEAD  LD+GF+     I S +P   
Sbjct: 120 KSHQPQLVIGTPGRILDLVRENALDIHNAHYLVVDEADMTLDLGFLKETDAIASTLPKDL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+     ++ NP    V      + TI++  V+T  +   K  L+  L
Sbjct: 180 QMLVFSATIPEKLRPFLRKYMYNPVIEVVANKHVISPTIDNWLVSTKGRDRNK--LIYDL 237

Query: 239 LQSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           L    TM      ++F N K+    L + L  QG  V  +HG I  R R +I+   +   
Sbjct: 238 L----TMGEPYLALVFANTKERADELTNYLRSQGLKVAKVHGGIQPRQRKRIMREIQNLD 293

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            Q +VA+DLAARG+DI  V HV N D+P   E ++HR+GRTGR G  G A TL    + K
Sbjct: 294 YQFVVATDLAARGIDIEGVSHVINDDIPEDLEFFVHRVGRTGRNGMKGTAITLYEPSEEK 353

Query: 356 HIDAIEKL 363
            ID +E +
Sbjct: 354 LIDELESM 361


>gi|114768996|ref|ZP_01446622.1| ATP-dependent RNA helicase protein [alpha proteobacterium HTCC2255]
 gi|114549913|gb|EAU52794.1| ATP-dependent RNA helicase protein [alpha proteobacterium HTCC2255]
          Length = 667

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 198/360 (55%), Gaps = 8/360 (2%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEKG--RARVR 71
           A+   GY   TP+Q++      +  D+   AQTG+GKT  F + +  TIL+      +  
Sbjct: 8   ALAKQGYDTLTPVQLEVSKKEFENSDLLVSAQTGSGKTVGFGIAIAPTILKDAINFDKAV 67

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
            P  L++ PTRELA QV             T+A  +GG+    + + LERG+ +++ TPG
Sbjct: 68  APLALVIAPTRELAMQVKRELTWLYGMAKATIASCVGGMDMRDERRSLERGSHIVVATPG 127

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+ DH  RG + ++ ++ +V+DEAD MLD+GF   ++ I S  P +R+TL+FSAT+   +
Sbjct: 128 RLRDHIQRGSINLSQVKAVVLDEADEMLDLGFREDLEFILSEAPESRRTLMFSATVPRAI 187

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-TYAQYSKKCALLQQLLQSQDTMKNGII 250
             +++++ ++   I + T S T +  +  ++A T +    + A++  L   +    N ++
Sbjct: 188 VNLAKSYQKDA--IRITTVSDTKQHADIEYIAMTVSPRDGENAIINALRYYE--APNALV 243

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           FCN +  V  L   L  +GFSV A+ G + Q  R   L   ++G  ++ VA+D+AARG+D
Sbjct: 244 FCNTRAMVNRLTSRLSNRGFSVVALSGELSQSERTHALQAMRDGRARVCVATDVAARGID 303

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           +P++  V + ++P   E  +HR GRTGRAGR G +  +V     K  + + +L +   +W
Sbjct: 304 LPNLDLVVHAELPQNHETMLHRSGRTGRAGRQGVSAMIVPSRFRKKAERLLQLGKVTANW 363


>gi|328774195|gb|EGF84232.1| hypothetical protein BATDEDRAFT_84954 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 764

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 121/364 (33%), Positives = 193/364 (53%), Gaps = 27/364 (7%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           LS   + ++   G V+  PIQ  +   +++  D+ G A+TGTGKT +F LPM+ +L++ R
Sbjct: 148 LSLSTIESLKARGIVQLFPIQAASFDPIIKGMDLLGRARTGTGKTLAFSLPMIEVLKRER 207

Query: 68  A--------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                    R R PR LI+ PTRELA QV   F+       L      GG P+++Q   +
Sbjct: 208 ESNRHLFSQRGRAPRVLIMAPTRELAMQVHREFDSISSG-ELKSTCAYGGSPYDSQCNAM 266

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178
             G DV++ TPGR++DH  RG L +N +  + +DEAD+MLD+GF   ++ I   V   + 
Sbjct: 267 RDGIDVIVGTPGRLIDHIERGTLKLNQLRFICLDEADQMLDIGFAESMEKILQQVQEQKS 326

Query: 179 --------QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS----TAETIEHCFVATYA 226
                   Q LLFSATM   +++    +++ P ++ ++   +    T+ T++H  +A++ 
Sbjct: 327 KLTDAPDHQVLLFSATMPVWIKQAVSKYMK-PNKVTLDLIGTDKQKTSATVKHYAIASHW 385

Query: 227 QYSKKCALLQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
           Q   + ALL  ++        G  IIF   K     L  + +        +HG+I Q+ R
Sbjct: 386 Q--NRSALLGDIVAIYGRGGAGRTIIFVETKGEANELAMNDKLVTMGTQVLHGDIQQKQR 443

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
              +  F+EG    ++ +++ ARG+DIP+V  V N + P+  E+YIHR GRTGRAG+ G 
Sbjct: 444 EVTMQGFREGKFTSLITTNVCARGVDIPEVDLVINCEPPSDVESYIHRSGRTGRAGKSGI 503

Query: 345 AFTL 348
             T 
Sbjct: 504 CVTF 507


>gi|307206923|gb|EFN84769.1| Putative ATP-dependent RNA helicase me31b [Harpegnathos saltator]
          Length = 435

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 115/361 (31%), Positives = 192/361 (53%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L  +++  + + G+ KP+PIQ  +IP+ L   D+   A+ GTGKT ++ +P   
Sbjct: 56  EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSSKDILARAKNGTGKTGAYSIP--- 112

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LE+   +  + + L++ PTRELA Q +    +  K+ ++ V +  GG        ++ +
Sbjct: 113 VLEQVDPKKDVIQALVIVPTRELALQTSQICIELAKHMDIKVMVTTGGTNLRDDIMRIYQ 172

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGRILD  ++    M + +ILV+DEAD++L   F   + ++ S +P  RQ L
Sbjct: 173 KVQVIIATPGRILDLMDKNVANMEHCKILVLDEADKLLSQDFKGMLDHVISRLPHERQIL 232

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    +++  E  L++P  I +    +     ++     + Q  +K   L  L  S
Sbjct: 233 LYSATFPLTVKQFMEKHLRDPYEINLMEELTLKGVTQY---YAFVQERQKVHCLNTLF-S 288

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   +   G+    IH  + Q  R ++  +F+ G  + +V+
Sbjct: 289 KLQITQSIIFCNSTQRVELLAKKITDLGYCCYYIHAKMAQAHRNRVFHDFRAGLCRNLVS 348

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  IE
Sbjct: 349 SDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRFNLHRIE 408

Query: 362 K 362
           +
Sbjct: 409 Q 409


>gi|302791703|ref|XP_002977618.1| hypothetical protein SELMODRAFT_107027 [Selaginella moellendorffii]
 gi|300154988|gb|EFJ21622.1| hypothetical protein SELMODRAFT_107027 [Selaginella moellendorffii]
          Length = 663

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 124/346 (35%), Positives = 188/346 (54%), Gaps = 16/346 (4%)

Query: 27  IQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG----RARVRMPRTLILEPTR 82
           IQ ++  +VL   D+ G A+TG GKT +FVLP++  L K     +   R P  L+L PTR
Sbjct: 106 IQAQSFDIVLDGDDLVGRARTGQGKTLAFVLPIIESLRKSSSGKKGYGRAPTVLVLAPTR 165

Query: 83  ELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142
           ELA QV  +FE YG    L+   + GG  +  Q   + RG D+++ TPGRI D  +RG L
Sbjct: 166 ELAKQVHADFECYGGAAGLSTICVYGGSQYGPQQNAMRRGVDIVVGTPGRIKDFLDRGDL 225

Query: 143 LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--QTLLFSATMTDELQKVSENFLQ 200
            +  ++  V+DEAD ML+MGF+  ++ I   V  T   QTLLFSATM   +++++  FL+
Sbjct: 226 NLKTLKFRVLDEADEMLNMGFVEAVEAILGAVEDTSSVQTLLFSATMPSWVKEIATRFLK 285

Query: 201 -NPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
            N K +++  +     +  ++H  +     YS +  ++  +++   +    I+F   K +
Sbjct: 286 PNKKTVDLVGDEKMKASNNVKHLLL--QCAYSARSQMIADVIKVYGSGGRVIVFTETKND 343

Query: 258 VVNLCHSLEKQGFSVC-AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
              L  SL   G +V   +HG+I Q  R   L+ F+     ++VA+D+AARGLDI DV  
Sbjct: 344 ASELAGSL---GTNVARPLHGDIPQAQREHTLAGFRSAKFLVLVATDVAARGLDINDVQL 400

Query: 317 VF-NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +    + P   E YIHR GRTGRAG  G A  +  ++    I  IE
Sbjct: 401 IIQQCEPPKDVETYIHRSGRTGRAGNTGIAVMMFDRKKEYMIPMIE 446


>gi|283783572|ref|YP_003374326.1| DEAD/DEAH box helicase [Gardnerella vaginalis 409-05]
 gi|283441454|gb|ADB13920.1| DEAD/DEAH box helicase [Gardnerella vaginalis 409-05]
          Length = 607

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 120/363 (33%), Positives = 187/363 (51%), Gaps = 22/363 (6%)

Query: 3   FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           FA LG+ P+ +  VL A G     PIQ  T+P  LQ  ++ G  +TG+GKT +F +P++ 
Sbjct: 153 FAQLGV-PEPLVEVLRADGKTTAFPIQQATLPDSLQGANILGRGRTGSGKTLAFSIPLVA 211

Query: 62  IL----------EKGR-----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
            L          +K R     + +  PR +IL PTREL  Q+ D        Y +    +
Sbjct: 212 RLAENFVDLIHSDKNRKSRESSEIPAPRAIILAPTRELVHQIDDVIAPLAAAYGMRTVTV 271

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG+ ++ Q  +L++GA +++  PGR+ D   +G L +  + + V+DEAD M DMGF+P 
Sbjct: 272 YGGVRYQRQVSQLKQGAQIVLACPGRLEDLLRQGALTLEKVMVSVLDEADEMADMGFLPA 331

Query: 167 IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
           +  +   V    Q +L SAT+  ++  + E FL N     V+      +T+ H   A  A
Sbjct: 332 VTRLLEQVAPDGQRMLLSATLDKQVSTLVERFLPNAVVHAVDDADCQVDTMTHHIFAVSA 391

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
               K  +L++L   +   K  I F   K    N+     +QG     + GN+ Q  R +
Sbjct: 392 --GDKYEVLRKLASGK---KRSIFFTRTKYQAKNMAKKFVQQGIPAVDLQGNLSQNQRDR 446

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L+ F EG ++++VA+D+AARG+DI DV  V   + P   ++++HR GRT RAG  G   
Sbjct: 447 HLAVFAEGLVRVLVATDVAARGIDISDVALVVQTEPPEDPKSFLHRSGRTARAGEEGDVV 506

Query: 347 TLV 349
           TLV
Sbjct: 507 TLV 509


>gi|47228482|emb|CAG05302.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 599

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 124/349 (35%), Positives = 188/349 (53%), Gaps = 33/349 (9%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR--TLILEPTR 82
           TP+Q   IPL +   DV   A TG+GKT +FV+P++ +L K   +++  +   L++ PTR
Sbjct: 33  TPVQSACIPLFMSNKDVAAEAVTGSGKTLAFVIPIIELLLKREEKLKKMQVGALVITPTR 92

Query: 83  ELAAQVADNFEKYGKNY-NLTVALLIGGI-PFEAQNKKLERGADVLICTPGRILDHFNRG 140
           ELA Q++   E++ + +   T  LLIGG  P E   K  ++GA+++I TPGR+ D F R 
Sbjct: 93  ELALQISQVMEQFLQRFPQFTQILLIGGSNPIEDVEKFKDQGANIVIATPGRLEDMFKRK 152

Query: 141 K------LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
                    + ++E+LV+DEADR+LDMGF   +  I   +P  R+T LFSAT T EL+K+
Sbjct: 153 ADGLDLACWVKSLEVLVLDEADRLLDMGFEASLNAILGHLPKQRRTGLFSATQTQELEKL 212

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
               L+NP RI V    + A  ++    +  + Y   C       +S+D   + + F  Q
Sbjct: 213 VRAGLRNPVRITVKEKGAAASAVQKT-PSRLSNYYTIC-------RSEDKFNHLVAFLRQ 264

Query: 255 KKNVVNL-----CHSLEKQGFS---------VCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            K+  NL     C  +E  G +         VC IHG +  + R KI + F+     ++V
Sbjct: 265 HKHEKNLVFFSTCACVEYFGRALETLIKKANVCCIHGKMKDK-RNKIFAEFRSLKSGILV 323

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            +D+ ARG+DIPDV  V  +D P+ A  ++HR GRT R G  G A   +
Sbjct: 324 CTDVMARGIDIPDVNWVLQYDPPSSASAFVHRCGRTARIGNQGNALVFL 372


>gi|169847756|ref|XP_001830587.1| ATP-dependent RNA helicase DBP10 [Coprinopsis cinerea okayama7#130]
 gi|116508323|gb|EAU91218.1| ATP-dependent RNA helicase DBP10 [Coprinopsis cinerea okayama7#130]
          Length = 949

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 125/410 (30%), Positives = 210/410 (51%), Gaps = 59/410 (14%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPML 60
           F  +GL P ++ ++   GY  PTPIQ  +IP +L+    D+ G+A+TG+GK+ ++++P++
Sbjct: 101 FQSMGLHPSLLRSLTLQGYRIPTPIQRLSIPALLENPPRDLVGMARTGSGKSLAYMVPLV 160

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQV------------------ADNFEKYGKNYNLT 102
             L          R LIL PTRELA Q+                   D   +  K  +L 
Sbjct: 161 QRLGGIHQTTFGARALILLPTRELAVQILKVGKELARGWHAKGDHAGDKEGESSKGQSLR 220

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
             L++GG   + Q + +    DV+I TPGR+L       L + +I+ +V DEADR+ +MG
Sbjct: 221 WGLVVGGEGLDEQFEMITNNPDVIIATPGRLLHLVVEMNLDLKSIQYVVFDEADRLFEMG 280

Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           F   +  +   +P +RQT+LFSAT+   L + ++  LQ+PK + +++ S  +  ++  F 
Sbjct: 281 FETAMNELLHRLPPSRQTILFSATLPKSLVEFAKAGLQDPKLVRLDSESKISSDLKMAFF 340

Query: 223 ATYAQYSKKCALLQQLLQSQDTMK-----------------------------------N 247
           +   Q  K+  LL  L   +D +K                                    
Sbjct: 341 SV-KQAEKEACLLTLL---RDVIKVPLGENKLEDDDGDKDKKKKGGKKAKVAPHALAPHQ 396

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            +IF   K +V  L + L   G+SV  I+G++DQ +R   +  F++G   L+V +D+AAR
Sbjct: 397 TLIFAATKHHVEYLTNLLITVGYSVSHIYGSLDQVARSIQMDKFRKGLTNLLVVTDVAAR 456

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           G+DIP + +V N+D P+ A  ++HR+GRT RAGR G A++ +   ++ ++
Sbjct: 457 GIDIPVLQNVVNYDFPHGARVFVHRVGRTARAGRPGWAWSFITNSELPYL 506


>gi|322388235|ref|ZP_08061839.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           infantis ATCC 700779]
 gi|321140907|gb|EFX36408.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           infantis ATCC 700779]
          Length = 447

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 123/367 (33%), Positives = 192/367 (52%), Gaps = 11/367 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTQFKFKKYIEEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   + ++ + ++  +GG     Q  K
Sbjct: 61  QQLDEESDSVQ---AVITAPSRELATQIYQAARQIASHSDVEIRVVNYVGGTDKARQIDK 117

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQ 236
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +  + +   L 
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYELT 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q++Q    M    IF N K     L   L  QG  V  IHG+I  R R +I++  K    
Sbjct: 238 QVMQPYLAM----IFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDF 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   
Sbjct: 294 EYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSD 353

Query: 357 IDAIEKL 363
           I  +EKL
Sbjct: 354 IRELEKL 360


>gi|256017200|ref|NP_001006319.2| probable ATP-dependent RNA helicase DDX6 [Gallus gallus]
          Length = 483

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 115/362 (31%), Positives = 194/362 (53%), Gaps = 8/362 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 97  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L+  +  ++    +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 157 RLDLKKDNIQ---AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   + +++++V+DEA+++L   F+  +++I   +P  RQ 
Sbjct: 214 DTVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEANKLLSQDFVQIMEDIILTLPKNRQI 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK   + LQ P  I +    +     ++     Y    +K   L  L  
Sbjct: 274 LLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQY---YAYVTERQKVHCLNTLF- 329

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 330 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 389

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 390 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449

Query: 361 EK 362
           E+
Sbjct: 450 EE 451


>gi|288558810|sp|P54824|DDX6_XENLA RecName: Full=ATP-dependent RNA helicase ddx6; AltName:
           Full=ATP-dependent RNA helicase p54; Short=P54H;
           Short=Xp54; AltName: Full=DEAD box protein 6
 gi|213623790|gb|AAI70228.1| P54H protein [Xenopus laevis]
 gi|213623792|gb|AAI70230.1| P54H protein [Xenopus laevis]
          Length = 481

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 117/362 (32%), Positives = 194/362 (53%), Gaps = 8/362 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 96  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 155

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L+  +  ++    +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 156 RLDLKKDCIQ---AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 212

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++I+++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 213 DTVHVVIATPGRILDLIKKGVAKVDHIQMIVLDEADKLLSQDFMQIMEDIIMTLPKNRQI 272

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK     LQ P  I +    +     ++     Y    +K   L  L  
Sbjct: 273 LLYSATFPLSVQKFMTLHLQKPYEINLMEELTLKGVTQY---YAYVTERQKVHCLNTLF- 328

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 329 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 388

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 389 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 448

Query: 361 EK 362
           E+
Sbjct: 449 EE 450


>gi|242219333|ref|XP_002475447.1| predicted protein [Postia placenta Mad-698-R]
 gi|220725348|gb|EED79339.1| predicted protein [Postia placenta Mad-698-R]
          Length = 806

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 127/357 (35%), Positives = 192/357 (53%), Gaps = 17/357 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +S      +  A +V  T IQ K++P+ L+  DV G A+TG+GKT +F++P+L I
Sbjct: 56  FADLPVSGLTKRGLKKAFFVDMTDIQAKSLPVSLKGKDVLGAARTGSGKTLAFLVPVLEI 115

Query: 63  LEKGRARVRMPR----TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L +   R   P+     LI+ PTRELA Q+ D     G  ++ +  L+IGG   + + ++
Sbjct: 116 LYR---RKWGPQDGLGALIISPTRELAVQIFDVLRSIGGYHSFSAGLVIGGKNVKDERER 172

Query: 119 LERGADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L R  ++L+ TPGR+L H ++      +N+++LV+DEADR+LDMGF   +  + S +P  
Sbjct: 173 LSR-MNILVATPGRLLQHMDQTIGFECDNLQMLVLDEADRILDMGFQRTLSALLSHLPKA 231

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKKCAL 234
           RQTLLFSAT TD +  ++   L++P  I V   +  S+  +++E  +V       +K  L
Sbjct: 232 RQTLLFSATQTDSVSDLARLSLKDPVYIGVHDSDNASAMPKSLEQHYV--LCTLDQKLDL 289

Query: 235 LQQLLQSQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           L   L+S    K  +    C Q + V      L   G  +  +HG   Q +R+     F 
Sbjct: 290 LWSFLKSHLQSKVLVFLSSCKQVRFVFETFRRLHP-GVPLLHLHGKQKQMTRLATFQRFT 348

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
                ++ A+D+AARGLD P V  V   D P  AE YIHR+GRT R    GK    +
Sbjct: 349 GMKHAVLFATDIAARGLDFPAVNWVLQVDAPEDAETYIHRVGRTARYESAGKGLLFL 405


>gi|254565179|ref|XP_002489700.1| ATP-dependent RNA helicase [Pichia pastoris GS115]
 gi|238029496|emb|CAY67419.1| ATP-dependent RNA helicase [Pichia pastoris GS115]
 gi|328350119|emb|CCA36519.1| ATP-dependent RNA helicase DDX18 [Pichia pastoris CBS 7435]
          Length = 546

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 124/357 (34%), Positives = 205/357 (57%), Gaps = 16/357 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DL LS   + A+ + G+ K T +Q +TIP +L   DV G A+TG+GKT +F++P + 
Sbjct: 85  NFTDLKLSEPTLKAIGNMGFTKMTAVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 144

Query: 62  ILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   + + R     +++ PTRELA Q+     +  ++++ T  +LIGG    A+ +KL 
Sbjct: 145 MLYSLKFKPRNGTGAIVITPTRELALQIFGVARELMESHSQTFGILIGGANRRAEAEKLM 204

Query: 121 RGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTR 178
           +G +++I TPGR+LDH    K  +  N++ L+IDEADR+L++GF   ++ I  ++P   R
Sbjct: 205 KGVNIIIATPGRLLDHLQNTKGFIFKNLKALIIDEADRILEIGFEDEMKQIIKILPNENR 264

Query: 179 QTLLFSATMTDELQKVSE-NFLQNPKRIEVNTP--SSTAETIEHCFVATYAQYSKKCALL 235
           QT+LFSAT T +++ ++  +  + P  I V++   +ST + +E  +V       K+  LL
Sbjct: 265 QTMLFSATQTTKVEDLARVSLRKGPLYINVDSENETSTVDGLEQGYVV--CDSDKRFLLL 322

Query: 236 QQLLQSQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
              L+ ++  K  I+F   CN  K    L + ++     V  +HG   Q+ R      F 
Sbjct: 323 FSFLK-RNQKKKIIVFLSSCNSVKYYSELLNYID---LPVLDLHGKQKQQKRTNTFFEFC 378

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
             T  +++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R G +GK  +L+
Sbjct: 379 NATQGVLICTDVAARGLDIPSVDWIIQFDPPDDPRDYIHRVGRTAR-GSNGKGKSLM 434


>gi|255083404|ref|XP_002504688.1| predicted protein [Micromonas sp. RCC299]
 gi|226519956|gb|ACO65946.1| predicted protein [Micromonas sp. RCC299]
          Length = 401

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 190/378 (50%), Gaps = 52/378 (13%)

Query: 12  VVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA-- 68
            V A+L A G+  P+ IQ    P+     D   +A+TG+GKT +F+LP+L  +E   A  
Sbjct: 10  AVKALLTAKGFTAPSKIQQHAWPVACAGRDAIAVAKTGSGKTLAFLLPILHRMEARAATP 69

Query: 69  ---------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                     V  P  ++L PTRELA Q+    +K+G         + GG P   Q ++L
Sbjct: 70  ADESSAPASSVPEPDAMVLAPTRELALQIHAEADKFGAATRAGAVAVYGGAPLHKQKEEL 129

Query: 120 -------ERGA---DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                  +RGA    V++ TPGR+ D   +G L +   + +V+DEADRML+MGF P ++ 
Sbjct: 130 VAAHGRRKRGAATGTVVVATPGRLCDLMKQGSLSLRRCDFIVLDEADRMLEMGFEPQLKE 189

Query: 170 ITSLVPFT---RQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATY 225
           I   +P +   RQTLLF+AT    ++K++ ++L ++ +  E N                 
Sbjct: 190 IFGELPSSESGRQTLLFTATWPKAVRKMAASYLAKDTESSEGNGDGGDG----------- 238

Query: 226 AQYSKKCALLQQLLQSQDTMKNG---------------IIFCNQKKNVVNLCHSLEKQGF 270
           A+ +   A+ Q+ + + D  K+                + F N K+ V NL  +    GF
Sbjct: 239 AELAANKAVSQRFVHATDDEKDKKMYDVLCELPEGSRVVAFANTKRRVENLAKTFWDFGF 298

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
              ++HG+  Q  R   L  F +    LM A+D+AARGLDI  V HV NFD+    E+Y+
Sbjct: 299 GTVSVHGDKKQNEREAALKKFVDNQCPLMFATDVAARGLDIKGVTHVVNFDMARDVESYV 358

Query: 331 HRIGRTGRAGRHGKAFTL 348
           HRIGRTGRAG  G++ T 
Sbjct: 359 HRIGRTGRAGELGESVTF 376


>gi|221055405|ref|XP_002258841.1| ATP-dependent RNA helicase [Plasmodium knowlesi strain H]
 gi|193808911|emb|CAQ39614.1| ATP-dependent RNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 433

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 117/360 (32%), Positives = 189/360 (52%), Gaps = 7/360 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + GY KP+PIQ ++IP+ L   ++   A+ GTGKTA+F +P+L 
Sbjct: 61  EFEDYFLKRELLMGIFEKGYEKPSPIQEESIPVALAGKNILARAKNGTGKTAAFAIPLL- 119

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             EK        + LIL PTRELA Q +   ++ GK+  +   +  GG        +L  
Sbjct: 120 --EKCNTHKNFIQGLILVPTRELALQTSAMIKELGKHMKIQCMVTTGGTSLREDIMRLYN 177

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L  TPGRILD  N+    ++   I+V+DEAD++L   F P ++ +   +P  +Q L
Sbjct: 178 VVHILCGTPGRILDLANKDVANLSGCHIMVMDEADKLLSPEFQPIVEELMKFLPKEKQIL 237

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           ++SAT    +++  + +L +   I +     T + I   +   + +  +K   L  L  +
Sbjct: 238 MYSATFPVTVKEFRQIYLSDAHEINL-MDELTLKGITQYYA--FVKERQKVHCLNTLF-A 293

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 294 KLQINQAIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFRNGACRCLVS 353

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  L+  ED  ++  IE
Sbjct: 354 SDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINLITYEDRFNLYKIE 413


>gi|238506126|ref|XP_002384265.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Aspergillus flavus
           NRRL3357]
 gi|220690379|gb|EED46729.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Aspergillus flavus
           NRRL3357]
          Length = 453

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 120/348 (34%), Positives = 183/348 (52%), Gaps = 7/348 (2%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
            + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P    LE+   +    +
Sbjct: 3   GIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIP---TLERINPKSTKTQ 59

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            LIL PTRELA Q +   +  GK+  + V +  GG        +L     +L+ TPGR+L
Sbjct: 60  ALILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVL 119

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ +LFSAT    ++  
Sbjct: 120 DLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQVMLFSATFPLIVKSF 179

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
            +  ++NP  I +     T   I   +   + +  +K   L  L  S+  +   IIFCN 
Sbjct: 180 KDKHMRNPYEINL-MDELTLRGITQYYA--FVEEKQKVHCLNTLF-SKLQINQSIIFCNS 235

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
              V  L   + + G+S    H  + Q+ R ++  +F+ G  + +V SDL  RG+DI  V
Sbjct: 236 TNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAV 295

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
             V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  IE+
Sbjct: 296 NVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKIEQ 343


>gi|156844875|ref|XP_001645498.1| hypothetical protein Kpol_1004p13 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380618|sp|A7TJ71|DBP4_VANPO RecName: Full=ATP-dependent RNA helicase DBP4
 gi|156116162|gb|EDO17640.1| hypothetical protein Kpol_1004p13 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 768

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 123/365 (33%), Positives = 202/365 (55%), Gaps = 18/365 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +S   +  + D+ ++K T IQ  +IP+ L+ +D+ G A+TG+GKT +F++P+L  
Sbjct: 43  FKDLPISNSTLKGLNDSAFLKLTDIQRDSIPMSLKGYDILGAAKTGSGKTLAFLIPVLEK 102

Query: 63  LEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + R         LI+ PTRELA Q+ +   K G + + +  L+IGG   + + +++ +
Sbjct: 103 LYRERWTEFDGLGALIISPTRELAMQIYEVLLKIGTSTSFSAGLVIGGKDVKFEMERISK 162

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++LI TPGRIL H ++   L  +N+++LV+DEADR LDMGF   +  I S +P TRQT
Sbjct: 163 -INILIGTPGRILQHMDQAIGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSNLPPTRQT 221

Query: 181 LLFSATMTDELQKVSENFLQNPKRI---EVNTPS-------STAETIEHCFVATYAQYSK 230
           LLFSAT +  L+ ++   L + K I   ++  PS       ST ET++  ++    +   
Sbjct: 222 LLFSATQSQSLEDLARLSLTDYKTIGNPDILNPSNGKVLGPSTPETLQQSYIN--VELPD 279

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ--GFSVCAIHGNIDQRSRMKIL 288
           K  +L   ++S    K  I+F +  K V  +  +  K   G S+  +HG   Q++R + L
Sbjct: 280 KLDMLYSFIKSHLKSKM-IVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQKARTETL 338

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             F       + A+D+ ARG+D P +  V   D P   + YIHR+GR  R G+ GK+  +
Sbjct: 339 DKFNRAQHVCLFATDVVARGIDFPAIDWVVQVDCPEDVDTYIHRVGRCARYGKQGKSMIM 398

Query: 349 VAKED 353
           +  ++
Sbjct: 399 LTPQE 403


>gi|3335268|gb|AAC27384.1| RNA helicase [Caenorhabditis elegans]
          Length = 763

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 134/402 (33%), Positives = 207/402 (51%), Gaps = 38/402 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+  L+  +   V  AGY K TPIQ   +PLV Q +D+   AQTG+GKTA+F+LP++T 
Sbjct: 343 FAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMTR 402

Query: 63  L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           L         G      PR +IL PTRELA Q+ +   K+     + +  + GG+     
Sbjct: 403 LIDDNNLNTAGEGGC-YPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYN 461

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD-MGFIPYIQNITSLV 174
             ++E+GA +++ T GRI      G + ++     V+DEADRM+D MGF   I+ I +  
Sbjct: 462 KGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYD 521

Query: 175 PF----TRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETI----EHCFVATY 225
                  RQTL+FSAT  D +Q+ +  FL +N   I ++   +  + +    E C     
Sbjct: 522 SMPRKENRQTLMFSATFPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFERC----- 576

Query: 226 AQYSKKCALLQQL---LQSQDTMKNG-------IIFCNQKKNVVNLCHSLEKQGFSVCAI 275
            +  KK  LL+ L   + S  T K+        ++F +Q+     L   L         I
Sbjct: 577 ERSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADILASILSSAQVPAITI 636

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG  +QR R + L  F+ G+  +++A+ +A RGLDI  V HV N+D+P+  ++YIHRIGR
Sbjct: 637 HGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGR 696

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV----DWLNG 373
           TGR G  G+A + ++ ED   +  +  ++        DW+ G
Sbjct: 697 TGRVGNSGRATSFIS-EDCSLLSELVGVLADAQQIVPDWMQG 737


>gi|119177270|ref|XP_001240430.1| conserved hypothetical protein [Coccidioides immitis RS]
 gi|303316075|ref|XP_003068042.1| Eukaryotic translation initiation factor 4A, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|118593421|sp|Q1DQ20|IF4A_COCIM RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|240107718|gb|EER25897.1| Eukaryotic translation initiation factor 4A, putative [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 398

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 206/376 (54%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L  +++  V   G+ +P+ IQ + I  V++  DV   AQ+GTGKTA+F    ++ 
Sbjct: 27  FDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATF---SISA 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K    ++  + LIL PTRELA Q+       G   ++     IGG       K L  G
Sbjct: 84  LQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSVECHACIGGTNVREDIKALNDG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D   R  L  + +++ V+DEAD ML  GF   I +I   +P + Q +L
Sbjct: 144 PQVVVGTPGRVHDMIQRRVLKTDQMKMFVLDEADEMLSRGFTEQIYDIFQFLPQSTQVVL 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++  V+  F+++P RI V     T E I+  ++A   +   K   L  L ++ 
Sbjct: 204 LSATMPQDVLDVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKE-EWKLDTLSDLYETV 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN ++ V  L   L  + F+V A+HG ++Q  R  I+  F+ G+ ++++A+
Sbjct: 263 -TITQAVIFCNTRRKVDWLTDKLIARDFTVSAMHGEMEQNQRDVIMKEFRSGSSRVLIAT 321

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE+
Sbjct: 322 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQ 381

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +  +++ L
Sbjct: 382 FYSTQIEEMPMNVADL 397


>gi|125555969|gb|EAZ01575.1| hypothetical protein OsI_23609 [Oryza sativa Indica Group]
          Length = 442

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 117/319 (36%), Positives = 171/319 (53%), Gaps = 21/319 (6%)

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
           +R   P   + +P       + +  +K+     L V +  GG P   Q + LERGAD+L+
Sbjct: 18  SRGEYPSGYVTDPL-----HINEEAKKFSFQTGLRVVVAYGGTPMYNQLRDLERGADILV 72

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF----TRQTLLF 183
            TPGR++D   R K+ +  I+ LV+DEADRMLDMGF P I+ I   +       RQT+LF
Sbjct: 73  ATPGRLVDMVERSKVSLEAIKYLVMDEADRMLDMGFEPQIRKIVERMNMPRKSVRQTMLF 132

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT   E+Q+++ +FL N   I V    S+ + I    V   +   K+  LL  L +   
Sbjct: 133 SATFPPEIQRLASDFLSNYIFITVGRVGSSTDLIMQK-VELLSDGEKRGYLLDLLQRQSV 191

Query: 244 TMKNG-------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            + N        ++F   K+   +L + L  +GF   AIHG+  Q+ R   L +FK G  
Sbjct: 192 GVANSKLQQPLTLVFVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLT 251

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +MVA+D+A+RGLD+P+V HV N+D+P   E+Y+HRIGRTGRAG+ G A     + D   
Sbjct: 252 PIMVATDVASRGLDVPNVAHVINYDLPKSVEDYVHRIGRTGRAGKAGSATAFFTESDHSL 311

Query: 357 IDA-IEKLIEKKV---DWL 371
               +E + E K    DWL
Sbjct: 312 AKGLLELMTEAKQDVPDWL 330


>gi|15150336|gb|AAK85400.1|AF399934_1 RNA helicase p47 [Spisula solidissima]
          Length = 449

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 114/360 (31%), Positives = 187/360 (51%), Gaps = 7/360 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L   ++  + + G+  P+PIQ  +IP+ L   D+   A+ GTGKT ++ +P+L 
Sbjct: 54  EFEDFCLKRDLLMGIFEKGWESPSPIQEASIPIALTGRDILARAKNGTGKTGAYAIPILE 113

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+    + + PTRELA Q +    +  K+    + +  GG   +    +L  
Sbjct: 114 RIDNTKDEVQ---AMCIVPTRELALQTSQILIELSKHIGAKIMVTTGGTNLKDDIMRLYE 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
               ++ TPGRILD  N+  + +    ILV+DEAD++L   F   + +I S +P  RQ L
Sbjct: 171 PVHAIVATPGRILDLMNKNLVKIGKCGILVLDEADKLLSQDFKGMLDSIISHLPNDRQIL 230

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    +++    +LQ+P  I +    +     ++     + Q  +K   L  L  S
Sbjct: 231 LYSATFPLSVEQFMRKYLQSPYEINLMDELTLKGVTQY---YAFVQEKQKVHCLNTLF-S 286

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+S   IH  ++Q+ R ++  +F++G  + +V 
Sbjct: 287 KLQINQSIIFCNSTQRVELLAKKITELGYSCFYIHARMNQQHRNRVFHDFRQGLCRNLVC 346

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D   +  IE
Sbjct: 347 SDLFTRGIDIQAVNVVINFDFPKHAETYLHRIGRSGRYGHLGIAINLITYDDRFSLHKIE 406


>gi|325180080|emb|CCA14481.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 594

 Score =  199 bits (506), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 129/400 (32%), Positives = 202/400 (50%), Gaps = 13/400 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           Y  PT IQ++ IP +L   DV G A TG+GKTA+F++P+L  L +   +  + R++I+ P
Sbjct: 187 YKDPTAIQMQAIPSMLAGRDVLGTAPTGSGKTAAFLIPILMRLARTHTQASI-RSIIVSP 245

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TRELA Q+     +    Y+L   +L          K   +  D+LI TP R++    + 
Sbjct: 246 TRELAVQIQKELRQLTVGYDLHSVVLSKTSAVNFSEKPFPK-IDILIATPLRLVHLIQQA 304

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR-QTLLFSATMTDELQKVSENFL 199
           K+ ++ +E++ +DEADR+ ++GFI  I  I +   F   Q  +FSATM   +++ + + L
Sbjct: 305 KVDLSGVEVITLDEADRLFELGFIDQIDEIIASCTFPDVQRTMFSATMLQGVEEAAISVL 364

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
           ++P +I V   +S A++I+   +    +  K  A+ Q  L         ++F   K+ V 
Sbjct: 365 RDPHKIAVGVKNSGAKSIDQKLMFVGKEEGKLVAMKQ--LGHIGLQIPALLFVQNKERVD 422

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            L   L   G  V AIH +  Q  R ++L  F+ G I +++ +DL  RGLD   V  V N
Sbjct: 423 ELYQELLYDGIHVGAIHADRSQMQRDQVLREFRAGKIWVLICTDLICRGLDFKAVNMVIN 482

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           +D P  A +YIHRIGRTGR GR G A T   + D++ +  I  +I+     +   + SL 
Sbjct: 483 YDFPQSAISYIHRIGRTGRNGRKGFAVTFFTERDMQFVRPIANVIKLSGQQVPAWMLSLK 542

Query: 380 PPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
            P       +  H  K  P  Q  T        Y  QK+H
Sbjct: 543 KPSN----GKRQHLLKAPPKRQHVTTVS----AYDLQKAH 574


>gi|46122619|ref|XP_385863.1| hypothetical protein FG05687.1 [Gibberella zeae PH-1]
 gi|91206546|sp|Q4IAS1|DBP4_GIBZE RecName: Full=ATP-dependent RNA helicase DBP4
          Length = 793

 Score =  199 bits (506), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 117/350 (33%), Positives = 198/350 (56%), Gaps = 12/350 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L LS      +  A +   T +Q + +PL L+  D+ G A+TG+GKT +F++P+L  
Sbjct: 53  FSELPLSVPTAEGLEIAHFQTLTDVQARAVPLALKGKDILGAAKTGSGKTLAFLIPVLEK 112

Query: 63  LEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         LI+ PTRELAAQ+ +   K G  ++ +  L+IGG   + + ++L+R
Sbjct: 113 LYRAQWTEFDGLGALIISPTRELAAQIFEVLRKVGTKHSFSAGLVIGGKSLKEEAERLDR 172

Query: 122 GADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR+L HF++      NN++ILV+DEADR++DMGF   +  +   +P  RQT
Sbjct: 173 -MNILVCTPGRMLQHFDQTAGFDANNLQILVLDEADRIMDMGFQSAVDALIEHLPRERQT 231

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTP--SSTAETIEHCFVATYAQYSKKCALLQQL 238
           L+FSAT + ++  ++   L++P+ + V+    S+T   ++  ++ T    ++K   L   
Sbjct: 232 LMFSATQSKKVSDLARLSLKDPEYVSVHEAAVSATPTNLQQHYIVT--PLTEKLDTLYGF 289

Query: 239 LQSQDTMKNGII-FCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +++   +K+ II F +  K V  +  S    + G  +  +HG   Q +RM+I S F    
Sbjct: 290 IKA--NLKSKIIVFLSSGKQVRFVYESFRHLQPGIPLLHLHGRQKQGARMEITSRFTAAK 347

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
              + A+D+ ARG+D P V  V   D P   + YIHR+GRT R   +G+A
Sbjct: 348 QTCLFATDVVARGIDFPAVDWVIQADCPEDVDTYIHRVGRTARYESNGRA 397


>gi|239629709|ref|ZP_04672740.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|239528395|gb|EEQ67396.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 448

 Score =  199 bits (506), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 125/351 (35%), Positives = 193/351 (54%), Gaps = 14/351 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L P V+  +       PTPIQ K IP +L+  ++ G +QTG+GKT +F++P+L++
Sbjct: 5   FKQFQLKPFVIDGLNAMAITAPTPIQQKVIPALLRGENIVGQSQTGSGKTHAFLVPLLSM 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE- 120
           ++      ++   +I  P+RELA Q+    ++  +    + +  L+GG+  + Q  KL+ 
Sbjct: 65  VDPTEDATQV---VITAPSRELANQIYAVAQQLIQTEPAIRINRLVGGMDKQKQIDKLQN 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V I TPGRILD      L+ +++   V+DEAD  LDMGF+  +  I S  P   Q 
Sbjct: 122 HQPHVAIGTPGRILDMIKSYDLVPSSVRHFVVDEADMTLDMGFLETVDAIASSFPDHLQM 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT+  +L+     ++ NP  IE+   S  A+T+E+  +A  A+   K  L+ QL+ 
Sbjct: 182 AVFSATIPQKLEPFLRKYMDNPTTIELKPQSVIADTVENILIA--AKGRDKNELIYQLV- 238

Query: 241 SQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              TM +    +IF N K +V  +   L+ QG  V  IHG I  R R +++ +  +   Q
Sbjct: 239 ---TMGHPFLVLIFANTKTSVDAIHDFLKHQGLKVAKIHGGIQPRERRRVMKDVADLKYQ 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +VA+DLAARG+DI  V  V N ++P   E +IHR+GRTGR G  G A TL
Sbjct: 296 YVVATDLAARGIDIKGVSMVINAEIPRDNEFFIHRVGRTGRNGMAGTAVTL 346


>gi|207080270|ref|NP_001128971.1| probable ATP-dependent RNA helicase DDX6 [Pongo abelii]
 gi|75062071|sp|Q5RFQ5|DDX6_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX6; AltName:
           Full=DEAD box protein 6
 gi|55725069|emb|CAH89402.1| hypothetical protein [Pongo abelii]
          Length = 483

 Score =  199 bits (506), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 115/362 (31%), Positives = 194/362 (53%), Gaps = 8/362 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 97  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L+  +  ++    +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 157 RLDLKKDNIQ---AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRGDIMRLD 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 214 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK   + LQ P  I +    +     ++     Y    +K   L  L  
Sbjct: 274 LLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQY---YAYVTERQKVHCLNTLF- 329

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 330 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 389

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIG +GR G  G A  L+  +D  ++ +I
Sbjct: 390 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGGSGRFGHLGLAINLITYDDRFNLKSI 449

Query: 361 EK 362
           E+
Sbjct: 450 EE 451


>gi|83859788|ref|ZP_00953308.1| hypothetical protein OA2633_07304 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852147|gb|EAP90001.1| hypothetical protein OA2633_07304 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 685

 Score =  199 bits (506), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 125/370 (33%), Positives = 196/370 (52%), Gaps = 13/370 (3%)

Query: 10  PKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
           P  +   L+A GY   T +Q   +       D+   AQTG+GKT +F + M   L  G  
Sbjct: 8   PSALVTALEAKGYETLTDVQNAVLTDEADGRDLLVSAQTGSGKTVAFGMAMAGTLLAGED 67

Query: 69  RV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
           R+     P  LI+ PTRELA QV    +         +A  +GG+    + + LERGA +
Sbjct: 68  RLPQAGAPLALIIAPTRELALQVQRELDWLYAEAGAKLASAVGGLDPRTERRALERGAHI 127

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           ++ TPGR+ DH  R  L ++NI  + +DEAD MLD GF   ++ I    P  R+TLLFSA
Sbjct: 128 VVGTPGRLRDHIERKALDLSNIRAIALDEADEMLDFGFREDLEFILGSAPEERRTLLFSA 187

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-TYAQYSKKCALLQQLLQSQDT 244
           T++ E+ +++E + ++  RI  +T S+T +  +  ++A T A + ++ A++  L      
Sbjct: 188 TVSKEIARIAETYQRDALRI--STLSATNQHADITYLAHTVAGHDRENAVINVL--RYHA 243

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
               ++FC  +  V  L   L  +GF   A+ G + Q  R K L   ++G   + VA+D+
Sbjct: 244 APRALVFCATRDAVNRLAAKLHNRGFHAVALSGELTQAERTKALQALRDGRATVCVATDV 303

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           AARG+D+P +  V + + P  AE+ +HR GRTGRAG  G +  +VA      +  I  L 
Sbjct: 304 AARGIDLPGLDLVVHAEPPTNAESLLHRSGRTGRAGAKGTSVFVVASSRKGRV--IRLLR 361

Query: 365 EKKV--DWLN 372
           E KV  +W++
Sbjct: 362 EAKVQAEWVD 371


>gi|163744883|ref|ZP_02152243.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanibulbus indolifex HEL-45]
 gi|161381701|gb|EDQ06110.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanibulbus indolifex HEL-45]
          Length = 699

 Score =  199 bits (506), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 125/405 (30%), Positives = 211/405 (52%), Gaps = 22/405 (5%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF---VLPMLTILEKGRA 68
           +  A+   GY   T +Q       L   D+   AQTG+GKT  F   + P L   +    
Sbjct: 5   IADALAQQGYETLTAVQEAVTDPALNDADLLVSAQTGSGKTVGFGLAIAPTLLGDDTHFG 64

Query: 69  RVRMPRTLILEPTRELAAQVADNFEK-YGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
           +   P  LI+ PTRELA QV+      YGK   + V   +GG+    + + L+RGA +++
Sbjct: 65  QAGAPLALIIAPTRELAMQVSRELTWLYGKAGAI-VTTCVGGMDTRTERRALDRGAHIVV 123

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+ DH  R  + ++ I  +V+DEAD MLD+GF   ++ I S  P  R+TLLFSAT+
Sbjct: 124 ATPGRLCDHIKRNNINLDAIRAVVLDEADEMLDLGFREDLEFILSESPEDRRTLLFSATV 183

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
              + K+++++ ++ +RI     +     IE+  +  + + ++   +   +L+  +  KN
Sbjct: 184 PAAIAKLAKSYQRDAQRITTVGEAKQHSDIEYRALNVHPRDTENAII--NVLRFYEA-KN 240

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            I+FCN +  V  L      +GFSV A+ G + Q  R   L   ++G  ++ +A+D+AAR
Sbjct: 241 AIVFCNTRAAVARLTSRFTNRGFSVVALSGELTQSERTNALQALRDGRARVCIATDVAAR 300

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           G+D+P++  V + D+P+ ++  +HR GRTGRAGR G +  +V  +     + +    + K
Sbjct: 301 GIDLPNLELVIHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPAKLRSKANRLIGGAKLK 360

Query: 368 VDWLNGDLSSLNPPLEKIDIAQHNHAR------KNNPIPQKSTGF 406
           V+W          P    ++   + AR       ++PIP+ + GF
Sbjct: 361 VEWAA--------PPSAAEVNAADEARLLADSAWSDPIPEDAEGF 397


>gi|152032523|sp|A4R8B5|HAS1_MAGO7 RecName: Full=ATP-dependent RNA helicase HAS1
          Length = 587

 Score =  199 bits (506), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 123/346 (35%), Positives = 190/346 (54%), Gaps = 17/346 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L LS   + A+ + G+ K T IQ + IP +L   DV G A+TG+GKT +F++P + +
Sbjct: 114 FSELNLSENTMKAIEEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAVEM 173

Query: 63  LEKGRARVRMPR----TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L   R+    PR     +++ PTRELA Q+        K+++ T  ++IGG    A+ +K
Sbjct: 174 L---RSLKFKPRNGTGVIVVSPTRELALQIFGVARDLMKHHSQTYGIVIGGANRRAEAEK 230

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G ++LI TPGR+LDH      +  N+  LVIDEADR+L++GF   ++ I  ++P  R
Sbjct: 231 LSKGVNLLIATPGRLLDHLQNTPFVFKNLRSLVIDEADRILEIGFEDEMRQIIKILPKER 290

Query: 179 QTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALL 235
           Q++LFSAT T +++ ++   L+  P  + V+     ST E +E  +V   A   K+  LL
Sbjct: 291 QSMLFSATQTTKVEDLARVSLRPGPLYLNVDEEKEYSTVEGLEQGYVVCEA--DKRFILL 348

Query: 236 QQLLQSQDTMKNGIIF--CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
              LQ     K  + F  CN  K    L + ++ Q   V  +HG   Q+ R      F  
Sbjct: 349 FSFLQKMKKKKIIVFFSSCNSVKYYAELLNYIDCQ---VLDLHGKQKQQKRTNTFFEFCN 405

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
                ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R 
Sbjct: 406 ADRGTLICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARG 451


>gi|312070734|ref|XP_003138283.1| ATP-dependent RNA helicase DHH1 [Loa loa]
 gi|307766556|gb|EFO25790.1| ATP-dependent RNA helicase DHH1 [Loa loa]
          Length = 432

 Score =  199 bits (506), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 115/368 (31%), Positives = 187/368 (50%), Gaps = 7/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  L   ++  + + G+ KP+PIQ  +I + L   D+   A+ GTGKT ++ +P  
Sbjct: 37  IEFEDFCLKRPLLMGIFEKGWEKPSPIQEASISIALSGQDILARAKNGTGKTGAYCIP-- 94

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++K     + P++LI+ PTRELA Q ++      K+ NL V +  GG        +L 
Sbjct: 95  -CIDKVDVEKKYPQSLIIVPTRELAFQTSNICVDLSKHMNLKVMVTTGGTELRNDIMRLN 153

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++    M++   LV+DEAD++L   F   +  +   +P  RQ 
Sbjct: 154 GTVHIIVATPGRILDLMDKNVADMSHCTTLVLDEADKLLSQDFQGILDRVIKFLPPDRQI 213

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L+SAT    +    +  ++NP  I +    +     ++     Y Q  +K   L  L +
Sbjct: 214 MLYSATFPLTVATFMQKHMRNPYEINLMEELTLVGVTQY---YAYVQEKQKVHCLNTLFR 270

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F++G  + +V
Sbjct: 271 KLQ-INQSIIFCNSTQRVELLAKKITEIGYSCYYIHSRMAQGHRNRVFHDFRKGACRNLV 329

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  I
Sbjct: 330 CSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGIAINLITYEDRFTLRRI 389

Query: 361 EKLIEKKV 368
           E  +  ++
Sbjct: 390 EAELRTRI 397


>gi|198437555|ref|XP_002123307.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
           [Ciona intestinalis]
          Length = 461

 Score =  199 bits (506), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 121/385 (31%), Positives = 199/385 (51%), Gaps = 15/385 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  L  +++  + + G+ KP+PIQ ++IP+ L   DV   A+ GTGK+ ++++PML
Sbjct: 74  VEFEDFCLKRELLMGIFEKGWEKPSPIQEESIPIALSGRDVLARAKNGTGKSGAYLIPML 133

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
              +  +  ++    L+L PTRELA Q +    +  ++   L V +  GG        +L
Sbjct: 134 GRCDLNKDHIQ---ALVLVPTRELALQTSQIAIELSRHMGALNVMVTTGGTNLRDDIMRL 190

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E    +++ TPGRILD  N+    +++  ++V+DEAD++L   F   + NI + +P +RQ
Sbjct: 191 ENSVHIIVATPGRILDLINKRIAKVDHCNMIVLDEADKLLSQDFKQMMDNIVTQLPVSRQ 250

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT    ++      ++ P  I +     T + +   +   Y +  KK   L  L 
Sbjct: 251 ILLFSATFPITVKDFMLKHMKKPYEINL-MEELTLKGVSQFY--AYVEEKKKVHCLNTLF 307

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F++G  + +
Sbjct: 308 -SKLQINQSIIFCNSTHRVELLAKKITELGYSCFYIHARMKQEYRNRVFHDFRQGMCRNL 366

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V SDL  RG+DI  V  V NFD P   E Y+HRIGR+GR G  G A  L+  +D   +  
Sbjct: 367 VCSDLFTRGIDIQAVNVVINFDFPKMPETYLHRIGRSGRYGHLGLAINLITYDDRFSLAR 426

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE       + L  D+  + P ++K
Sbjct: 427 IE-------EELKTDIKPIPPVIDK 444


>gi|261409198|ref|YP_003245439.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|261285661|gb|ACX67632.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
          Length = 448

 Score =  199 bits (506), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 115/347 (33%), Positives = 198/347 (57%), Gaps = 6/347 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG++  +   + + G   P+P+Q + IP +L+  DV   +QTGTGKT +++LP+L  
Sbjct: 6   FHTLGIAEDLSSRLAEFGIATPSPVQAEAIPPILEGKDVLATSQTGTGKTLAYLLPVLQG 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     ++  + LIL PT+ELA Q+    E+YG+   + V  LIGG   + Q +KL   
Sbjct: 66  ID---PEIKGAQKLILAPTQELAVQIVRESERYGEARGIGVLGLIGGAAAKRQIEKLRLH 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ +     KL M+ +  +V+DE D++ ++G    +  I       RQ + 
Sbjct: 123 PQLIVGTPGRVRELIEIRKLKMHQVTTIVVDEVDQVFNLGGAGDVDRILRSALRDRQLVF 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT++ E  ++ +  +  P  I ++    T   +EH +  +  +   K  +L+++++  
Sbjct: 183 LSATVSPETAELVKKEMDQPVEIGIDPERRTPSALEHYYFVS--EERDKLDMLRRVVRHY 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  +  I+F N  +++  +   L   G +  A++G+ D+ +R ++L+ F+EG  +L+VAS
Sbjct: 241 NPDR-AIVFVNATEDLAEVEAKLNYLGLNAAALYGDADKMTRSRVLNAFREGRTKLLVAS 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           D+AARGLDI  +G V N+D P  AE+Y HR GRTGR GR G A TLV
Sbjct: 300 DVAARGLDIEGLGMVINYDPPIDAEHYTHRAGRTGRMGRSGMAITLV 346


>gi|90422395|ref|YP_530765.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
 gi|90104409|gb|ABD86446.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
          Length = 659

 Score =  199 bits (506), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 120/348 (34%), Positives = 189/348 (54%), Gaps = 8/348 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           L  SP +  A+ +  Y  PTP+Q   +       D+   AQTG+GKT ++ L +   L  
Sbjct: 4   LTTSPPLARALAERNYNDPTPVQTAVLADQAAGRDLLVSAQTGSGKTVAYGLAIAKNLLG 63

Query: 66  GRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
              R      P  LI+ PTRELA QV           +  V   +GG+    + ++L RG
Sbjct: 64  DAERFEQAAAPLALIVAPTRELALQVHRELAWLYAYADARVVSCVGGMDPRQEQRELARG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A +++ TPGR+ DH  RG+L ++ ++ +V+DEAD MLD+GF   ++ I    P TR+TLL
Sbjct: 124 AHIVVGTPGRLCDHLRRGRLDVSQLKAVVLDEADEMLDLGFREDMEFILKTTPPTRRTLL 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL-LQQLLQS 241
           FSAT+   +  +++ + Q   R+EV         IE+  +       +   + + +  +S
Sbjct: 184 FSATLPRGIVALAKQYQQQAFRVEVANGEGGHADIEYQAIRIAPGDVEHAVVNVLRFHES 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I+FCN +  V +L  +L ++GFSV A+ G + Q  R   L + ++G  ++ VA
Sbjct: 244 PST----IVFCNTRNAVKHLQTALLERGFSVVALSGELTQNERTMALQSLRDGRARVCVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +D+AARG+D+P++  V + D+PN AE   HR GRTGRAG+ G +  LV
Sbjct: 300 TDVAARGIDLPNLALVIHADLPNDAEVMQHRSGRTGRAGKKGVSVLLV 347


>gi|238878350|gb|EEQ41988.1| ATP-dependent RNA helicase ROK1 [Candida albicans WO-1]
          Length = 640

 Score =  199 bits (506), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 134/433 (30%), Positives = 226/433 (52%), Gaps = 26/433 (6%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKG 66
           ++ KV+  ++D  +V+PTPIQ ++IP+ L   D+   A TG+GKT +F++P++  IL K 
Sbjct: 200 INKKVLSNLIDNEFVEPTPIQCESIPITLNNRDLIACAPTGSGKTLAFLIPLVQQILSKN 259

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLERGA-D 124
            ++    R LI+ PT ELA Q+    E   +    + VA+L   +  +  N  ++    D
Sbjct: 260 VSKNHGIRGLIISPTNELAVQIFQELEIITRGCKQINVAILSKQLASKLNNNIIKSSKYD 319

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV--PFTRQTLL 182
           +++ TP R++D   +G + ++ IE L+IDEAD++ D GF      I +    P  R+++ 
Sbjct: 320 IIVSTPLRLIDVVKQGNMDLSKIEQLIIDEADKLFDHGFAEQTDEILTHCTNPKIRKSI- 378

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +++++ + +++P RI +    + + TI+   V T  +  K  A+ +Q++Q  
Sbjct: 379 FSATIPSSVEEMAHSIMKDPLRIIIGHKEAASNTIDQKLVFTGNEQGKLLAI-RQMIQQG 437

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     IIF         L H L     +V  +H     + R +++  FK G I +++ +
Sbjct: 438 EFKPPIIIFLQSITRAKALFHELLYDRLNVDVVHAERTPKQREEVIKRFKNGDIWVLITT 497

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ ARG+D   V  V N+DVP  A+ Y+HRIGRTGR G+ GKA T   KED K I  I  
Sbjct: 498 DVLARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDDKAIKPILN 557

Query: 363 LIEKK------VDWLNGDLSSLNPPLEKIDIAQHNHARKN-NPIP----------QKSTG 405
           ++++         W+  D+  L+   EK  I  H   RK  + +P          Q    
Sbjct: 558 VMKQSGCNDGYSQWME-DMGKLSKK-EKKQIKTHEIQRKKISTVPKVIKQKRKQRQDMIA 615

Query: 406 FDRRKKNYSSQKS 418
             +R+K  S Q+S
Sbjct: 616 ASKRRKQESKQES 628


>gi|303289893|ref|XP_003064234.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454550|gb|EEH51856.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 485

 Score =  199 bits (506), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 125/364 (34%), Positives = 185/364 (50%), Gaps = 45/364 (12%)

Query: 11  KVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK----- 65
           K++ A+L  GY  PTPIQ +  P+ +   DV  +A+TG+GKT +F+LP L+ + K     
Sbjct: 47  KLIAALLKQGYASPTPIQAQAWPIAVTGRDVIAVAKTGSGKTCAFLLPALSRIMKTGASA 106

Query: 66  --------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                   GR    +P  ++L PTRELA Q+ D   K+          L GG     Q +
Sbjct: 107 APDMEMVDGRPAAVVPAAIVLAPTRELAIQIGDECAKFCPAAGAKTVTLYGGASKGDQLR 166

Query: 118 KLERGADVLICTPGRILDHFN-----RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
            L  GAD+++ TPGR++D           +   N + +V+DEADRMLDMGF P I+ I  
Sbjct: 167 ALRGGADMIVATPGRLIDFLAPPPGFSAPVSAKNAKYVVLDEADRMLDMGFEPQIKKILK 226

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQ----------NPKRIEVNTPSSTAETIEHCFV 222
           L P  RQTL+F+AT  + ++K++  F              +R+  N   S  +T+E   +
Sbjct: 227 LCPDARQTLMFTATWPEAVKKIAAQFTSADAAHVRIGDGGERLTAN--KSITQTVE--II 282

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ-GFSVCAIHGNIDQ 281
               +  +   +L+  L      K GI+FC  K+     C  ++++   + C   G    
Sbjct: 283 DEEDKLRRAIEVLKAELVDG---KRGIVFCGTKRR----CDFIDRKIKPATCEARGRF-- 333

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
                I +        L+VA+D+AARGLDIP V  V  +D P + E+Y+HRIGRTGRAG 
Sbjct: 334 ---TGIRTKPSARKAPLLVATDVAARGLDIPGVAVVLVYDFPLQTEDYVHRIGRTGRAGL 390

Query: 342 HGKA 345
            GKA
Sbjct: 391 TGKA 394


>gi|321252297|ref|XP_003192357.1| ATP-dependent RNA helicase of the DEAD-box family involved in
           ribosomal biogenesis ; Dbp3p [Cryptococcus gattii WM276]
 gi|317458825|gb|ADV20570.1| ATP-dependent RNA helicase of the DEAD-box family involved in
           ribosomal biogenesis, putative ; Dbp3p [Cryptococcus
           gattii WM276]
          Length = 639

 Score =  199 bits (506), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 124/361 (34%), Positives = 204/361 (56%), Gaps = 15/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LSP    A+   G+   T +Q +TIP +L   DV G A+TG+GKT +F++P + +
Sbjct: 163 FSTLNLSPPTTAAIERMGFETMTEVQARTIPPLLAGKDVLGAARTGSGKTMAFLVPSVEL 222

Query: 63  LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   R + V     +I+ PTRELA Q+    ++  ++++ T  +L+GG   +A+  KL +
Sbjct: 223 LSTLRFKPVNGTGVIIISPTRELALQIFGVAKELMQDHSQTFGVLMGGANRKAEADKLVK 282

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQ 179
           G ++++ TPGR+LDH    K  +  N++ LVIDEADR+L++GF   ++ I  L+P   RQ
Sbjct: 283 GVNLIVATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEEEMKQIIKLLPSENRQ 342

Query: 180 TLLFSATMTDELQKVSENFLQ-NPKRIEVNTP--SSTAETIEHCFVATYAQYSKKCALLQ 236
           ++LFSAT T ++  ++   L+  P  I V+    +STA+ +E  +V    +  ++  LL 
Sbjct: 343 SMLFSATQTTKVTDLARISLRPGPLYINVDETKEASTADMLEQGYVV--CESDQRFMLLF 400

Query: 237 QLLQSQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
             L+ ++  K  I+F   CN  K    L + ++     V  +HG   Q+ R      F  
Sbjct: 401 TFLK-KNLKKKVIVFFSSCNSVKYHAELLNYID---VPVLDLHGKQKQQKRTNTFFEFIN 456

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
               +++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT RAG+ GK+   +   +
Sbjct: 457 APAGILLCTDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVGRTARAGKSGKSLLFLLPSE 516

Query: 354 I 354
           +
Sbjct: 517 L 517


>gi|302786878|ref|XP_002975210.1| hypothetical protein SELMODRAFT_150370 [Selaginella moellendorffii]
 gi|300157369|gb|EFJ23995.1| hypothetical protein SELMODRAFT_150370 [Selaginella moellendorffii]
          Length = 626

 Score =  199 bits (506), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 124/346 (35%), Positives = 188/346 (54%), Gaps = 16/346 (4%)

Query: 27  IQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG----RARVRMPRTLILEPTR 82
           IQ ++  +VL   D+ G A+TG GKT +FVLP++  L K     +   R P  L+L PTR
Sbjct: 69  IQAQSFDIVLDGDDLVGRARTGQGKTLAFVLPIIESLRKSSSGKKGYGRAPTVLVLAPTR 128

Query: 83  ELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142
           ELA QV  +FE YG    L+   + GG  +  Q   + RG D+++ TPGRI D  +RG L
Sbjct: 129 ELAKQVHADFECYGGAAGLSTICVYGGSQYGPQQNAMRRGVDIVVGTPGRIKDFLDRGDL 188

Query: 143 LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--QTLLFSATMTDELQKVSENFLQ 200
            +  ++  V+DEAD ML+MGF+  ++ I   V  T   QTLLFSATM   +++++  FL+
Sbjct: 189 NLKTLKFRVLDEADEMLNMGFVEAVEAILGAVEDTSSVQTLLFSATMPSWVKEIATRFLK 248

Query: 201 -NPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
            N K +++  +     +  ++H  +     YS +  ++  +++   +    I+F   K +
Sbjct: 249 PNKKTVDLVGDEKMKASNNVKHLLL--QCAYSARSQMIADVIKVYGSGGRVIVFTETKND 306

Query: 258 VVNLCHSLEKQGFSVC-AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
              L  SL   G +V   +HG+I Q  R   L+ F+     ++VA+D+AARGLDI DV  
Sbjct: 307 ASELAGSL---GTNVARPLHGDIPQAQREHTLAGFRSAKFLVLVATDVAARGLDINDVQL 363

Query: 317 VF-NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +    + P   E YIHR GRTGRAG  G A  +  ++    I  IE
Sbjct: 364 IIQQCEPPKDVETYIHRSGRTGRAGNTGIAVMMFDRKKEYMIPMIE 409


>gi|58263404|ref|XP_569112.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108568|ref|XP_777235.1| hypothetical protein CNBB4650 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687159|sp|Q5KMN6|HAS1_CRYNE RecName: Full=ATP-dependent RNA helicase HAS1
 gi|50259920|gb|EAL22588.1| hypothetical protein CNBB4650 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223762|gb|AAW41805.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 607

 Score =  199 bits (506), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 124/361 (34%), Positives = 203/361 (56%), Gaps = 15/361 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LSP    A+   G+   T +Q +TIP +L   DV G A+TG+GKT +F++P + +
Sbjct: 131 FSTLNLSPPTTAAIERMGFETMTEVQARTIPPLLAGKDVLGAARTGSGKTMAFLIPSVEL 190

Query: 63  LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   R + V     +I+ PTRELA Q+    ++  + ++ T  +L+GG   +A+  KL +
Sbjct: 191 LSTLRFKPVNGTGVIIISPTRELALQIFGVAKELMQGHSQTFGVLMGGANRKAEADKLVK 250

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQ 179
           G ++++ TPGR+LDH    K  +  N++ LVIDEADR+L++GF   ++ I  L+P   RQ
Sbjct: 251 GVNLIVATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEEEMKQIIKLLPSENRQ 310

Query: 180 TLLFSATMTDELQKVSENFLQ-NPKRIEVNTP--SSTAETIEHCFVATYAQYSKKCALLQ 236
           ++LFSAT T ++  ++   L+  P  I V+    +STA+ +E  +V    +  ++  LL 
Sbjct: 311 SMLFSATQTTKVTDLARISLRPGPLYINVDETKEASTADMLEQGYVV--CESDQRFMLLF 368

Query: 237 QLLQSQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
             L+ ++  K  I+F   CN  K    L + ++     V  +HG   Q+ R      F  
Sbjct: 369 TFLK-KNLKKKVIVFFSSCNSVKYHAELLNYID---VPVLDLHGKQKQQKRTNTFFEFIN 424

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
               +++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT RAG+ GK+   +   +
Sbjct: 425 APAGILLCTDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVGRTARAGKSGKSLLFLLPSE 484

Query: 354 I 354
           +
Sbjct: 485 L 485


>gi|198424759|ref|XP_002127650.1| PREDICTED: similar to Ddx10 protein [Ciona intestinalis]
          Length = 736

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 128/407 (31%), Positives = 216/407 (53%), Gaps = 14/407 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +   + K    +  AG+V  T IQ   I   +   D+ G A+TG+GKT +F++P+L  
Sbjct: 50  FEEFPFATKTKAGLRKAGFVSLTAIQRAAIKPAMLGKDILGAAKTGSGKTLAFIIPILEC 109

Query: 63  LEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L K     +  P  L++ PTRELA Q+ +  +K G  +N +  LLIGG   + +   + +
Sbjct: 110 LHKHNWNSLDGPGALVISPTRELAFQIFEVLKKVGGKHNFSAGLLIGGNNVKEEAHSVGK 169

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             +++ICTPGR+L H +      MNN+++L++DEADR+LDMGF   +  I   +P  RQT
Sbjct: 170 -TNIIICTPGRLLQHMDTTSYFHMNNLKMLILDEADRILDMGFKTTLDAIIENLPSERQT 228

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQL 238
           LLFSAT T  ++ ++   L++P  I V++ +  ST + +   F+    +   K  +L   
Sbjct: 229 LLFSATQTKSVKDLARLSLRDPAYISVHSEAKHSTPQGLTQRFIC--CELKDKLNVLFSF 286

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEK--QGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +++    K  ++F +  K V  +  +  K   G  +  +HG ++Q  RM +   F     
Sbjct: 287 IRNHQKSK-CLVFVSSCKQVQFIFAAFCKLRPGTPMLHLHGRMNQLRRMSVYQEFCRKKF 345

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD P++  V   D P  A+ YIHR GRT R   +G +  ++   + + 
Sbjct: 346 AVLVATDIAARGLDFPEIDWVVQLDCPEDADTYIHRAGRTARYNGNGNSLLVLTPTEKEA 405

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           +  ++ L  KKV  L  ++ S    L KID    ++  ++    +K+
Sbjct: 406 M--LKHLQNKKVPILKSEIQS--NKLGKIDRKLQSYCAEDKEFKEKA 448


>gi|56784389|dbj|BAD82428.1| putative DEAD box RNA helicase [Oryza sativa Japonica Group]
 gi|56785382|dbj|BAD82340.1| putative DEAD box RNA helicase [Oryza sativa Japonica Group]
          Length = 477

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 168/306 (54%), Gaps = 21/306 (6%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRA 68
           A+  +G+V+PTPIQ +  P+ L+  D+ GIAQTG+GKT S++LP L        LE+G  
Sbjct: 170 AIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQGDG 229

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
               P  LIL PTRELA Q+     K+G         + GG P   Q + L RG +++I 
Sbjct: 230 ----PIVLILAPTRELAVQIQQESGKFGSYSRTRSTCIYGGAPKGPQIRDLRRGVEIVIA 285

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR++D    G   +  +  LV+DEADRMLDMGF P I+ I + +   RQTL +SAT  
Sbjct: 286 TPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWP 345

Query: 189 DELQKVSENFLQNPKRIEVNTPS-----STAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
            E++ ++  FLQNP ++ + +P      S  + IE   ++ + +Y +   LL  L+    
Sbjct: 346 REVESLARQFLQNPYKVIIGSPDLKANHSIQQIIE--VISEHEKYPRLSKLLSDLMDGSR 403

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
            +    IF   KK+   +   L   G+   +IHG+  Q  R  +L+ FK G   +M A+D
Sbjct: 404 IL----IFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATD 459

Query: 304 LAARGL 309
           +AARGL
Sbjct: 460 VAARGL 465


>gi|315045390|ref|XP_003172070.1| ATP-dependent RNA helicase ded1 [Arthroderma gypseum CBS 118893]
 gi|311342456|gb|EFR01659.1| ATP-dependent RNA helicase ded1 [Arthroderma gypseum CBS 118893]
          Length = 689

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 121/337 (35%), Positives = 178/337 (52%), Gaps = 23/337 (6%)

Query: 27  IQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI----------------LEKGRARV 70
           +Q  +IP+V+   D+   AQTG+GKT  F+ P+L+                    GR R 
Sbjct: 230 VQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFQSGPSPAPTQQGGQFSYGRQRK 289

Query: 71  RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130
             P +LIL PTREL +Q+ D   K+     +   ++ GG    +Q +++ERG D+L+ TP
Sbjct: 290 AYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATP 349

Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS---LVPFT-RQTLLFSAT 186
           GR++D   RG++ + NI+ LV+DEADRMLDMGF P I+ I     + P   RQTL+FSAT
Sbjct: 350 GRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPVAGRQTLMFSAT 409

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
              ++Q ++ +FL++   + V    ST+E I       Y +   K ++L  +L +     
Sbjct: 410 FPRDIQMLARDFLKDYVFLSVGRVGSTSENITQ--KVEYVEDGDKRSVLLDILHTHGAGL 467

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             +IF   K+   +L   L  Q F   AIHG+  QR R + L  F+ G   ++VA+ +AA
Sbjct: 468 T-LIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAA 526

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           RGLDIP+V HV     P          GRT R G  G
Sbjct: 527 RGLDIPNVTHVVTMTFPPTLTTMSTESGRTVRVGNTG 563


>gi|260946563|ref|XP_002617579.1| hypothetical protein CLUG_03023 [Clavispora lusitaniae ATCC 42720]
 gi|238849433|gb|EEQ38897.1| hypothetical protein CLUG_03023 [Clavispora lusitaniae ATCC 42720]
          Length = 561

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 121/387 (31%), Positives = 208/387 (53%), Gaps = 7/387 (1%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-EKGRARVRMPR 74
           +L+A +++PT +Q + IP+ L R D+   A TG+GKT +F+LPM+ +L E   ++    R
Sbjct: 145 LLEADFIEPTVVQCEAIPIALHRRDLIACAPTGSGKTVAFLLPMVQLLVEANLSKNPGVR 204

Query: 75  TLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE-RGADVLICTPGR 132
            L+L PT ELA+Q+    ++  + + ++T ALL   +     +K +      V++ TP R
Sbjct: 205 GLVLAPTNELASQIHVQLQQLTRGFKSVTSALLSRQLATRLSDKIVSGEKYSVIVSTPLR 264

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR-QTLLFSATMTDEL 191
           +LD    G L ++ +E LVIDEADRM D GF+     + + +   + +T +FSAT+  ++
Sbjct: 265 LLDMVQGGHLDLSTVEQLVIDEADRMFDRGFVEQTDALLAALSNAKLRTSIFSATIPAKV 324

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
           ++++ + +++P R+ V    + + +I+   V T ++  K  A+ +Q++Q  +     IIF
Sbjct: 325 EELANSIMRDPVRVIVGHKEAASSSIDQKLVFTGSEDGKLLAV-RQMIQQGEFKPPVIIF 383

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
                    L H L     +V  IH       R +++  FK G I +++ +D+ ARG+D 
Sbjct: 384 LQSITRAKALFHELVYDRLNVDVIHAERTPAQRDEVIRRFKNGDIWVLITTDVLARGVDF 443

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
             V  V N+DVP  A+ Y+HRIGRTGR G+ GKA T   KED   +  +  ++  K    
Sbjct: 444 KGVNLVINYDVPQTAQAYVHRIGRTGRGGKPGKAVTFFTKEDTLAVRPVVNVM--KQSGC 501

Query: 372 NGDLSSLNPPLEKIDIAQHNHARKNNP 398
                S    L ++  +   H R++ P
Sbjct: 502 EAGYGSWMEHLSRLSASDRRHLRRSEP 528


>gi|222151455|ref|YP_002560611.1| ATP-dependent RNA helicase homolog [Macrococcus caseolyticus
           JCSC5402]
 gi|222120580|dbj|BAH17915.1| ATP-dependent RNA helicase homolog [Macrococcus caseolyticus
           JCSC5402]
          Length = 443

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 125/376 (33%), Positives = 195/376 (51%), Gaps = 10/376 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L+P ++ AV D  + +PT IQ + IP + +   + G +QTGTGK+ +F+LP++  
Sbjct: 7   FEHFELAPYLIEAVKDLNFNQPTEIQRRVIPKLKKETHLIGQSQTGTGKSHAFLLPLINK 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLER 121
           ++K    +  P+ +IL PTRELA Q+ D  E        +   L IGG       +K + 
Sbjct: 67  IDKD---LIQPQMIILAPTRELAKQLYDASEHLISFTEGIKAGLYIGGTDKNKDIQKSKV 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D      L ++    +V+DEAD M+D+GF+P +  I + V    Q  
Sbjct: 124 QPQIVIGTPNRIKDLAEENVLHIHLANAVVVDEADLMIDLGFLPTVDKIAANVSRDAQIA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+   L      +L  P+ IE+   S T + I    V T +   KK  L+  +   
Sbjct: 184 VFSATIPKALHPFLNKYLSKPEFIEIEPDSKTNKNITFYLVPTKSN-DKKEKLVSVMNTC 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   IIF N +     L   L+ QG  V  +HG +  R R++++   K    Q ++A
Sbjct: 243 NPYL--AIIFANSRDRADELAEFLQDQGLKVGIMHGGLAPRERIQMMKRVKNLEFQYIIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HVFN+D+P   + + HR+GRTGR    G A TL   ++   I+ IE
Sbjct: 301 SDLASRGIDIEGVSHVFNYDIPKDIDFFTHRVGRTGRGNYTGVAITLYTPDEEDLINQIE 360

Query: 362 KLIEKKVDWLNGDLSS 377
           K   K   +++ D+ +
Sbjct: 361 K---KGFSFIHSDIKN 373


>gi|163758459|ref|ZP_02165547.1| ATP-dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
 gi|162284748|gb|EDQ35031.1| ATP-dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
          Length = 729

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 114/338 (33%), Positives = 181/338 (53%), Gaps = 6/338 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF---VLPMLTILEKGRARVR 71
           A+   GY   TP+Q   +   L+  D+   AQTG+GKT +F   + P L   E    R  
Sbjct: 14  ALTKRGYDALTPVQESMLAPELRDADLLVSAQTGSGKTVAFGISLAPTLMGEEDRLPRAE 73

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
            P  +++ PTRELA QV              +A  +GG+    + + L+RGA +++ TPG
Sbjct: 74  TPLAIVIAPTRELALQVERELAWLYAEAGAQIATCVGGMNMMTERRTLQRGAHIVVGTPG 133

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+ DH  RG L + +I  +V+DEAD MLD+GF   ++ I    P  R+TL+FSAT+   +
Sbjct: 134 RLRDHIERGSLNLTSIRAVVLDEADEMLDLGFRDDLEFILDAAPDQRRTLMFSATVPSGI 193

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
             +++ +    K + V T     + ++  + A     + +   +  +L+  D  KN I+F
Sbjct: 194 ANLAKRY--QTKAVRVTTAGEQKQHLDIEYRALSVAPNDRENAVINVLRFYDA-KNAIVF 250

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           C+ +  V +L      +GF+V A+ G + Q  R   L   ++G  ++ VA+D+AARGLD+
Sbjct: 251 CSTRATVNHLTARFSNRGFAVVALSGELSQNERSHALQALRDGRAKVCVATDVAARGLDL 310

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           PD+  V + D+P   E  +HR GRTGRAGR G +  +V
Sbjct: 311 PDLELVIHADLPKSPETLLHRSGRTGRAGRKGVSAMIV 348


>gi|170585414|ref|XP_001897479.1| germline helicase protein 1 [Brugia malayi]
 gi|158595158|gb|EDP33731.1| germline helicase protein 1, putative [Brugia malayi]
          Length = 432

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 115/368 (31%), Positives = 187/368 (50%), Gaps = 7/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  L   ++  + + G+ KP+PIQ  +I + L   D+   A+ GTGKT ++ +P  
Sbjct: 37  IEFEDFCLKRPLLMGIFEKGWEKPSPIQEASISIALSGQDILARAKNGTGKTGAYCIP-- 94

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++K     + P++LI+ PTRELA Q ++      K+ NL V +  GG        +L 
Sbjct: 95  -CIDKIDVEKKYPQSLIIVPTRELAFQTSNICVDLSKHLNLKVMVTTGGTELRNDIMRLN 153

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++    M++   LV+DEAD++L   F   +  +   +P  RQ 
Sbjct: 154 GTVHIIVATPGRILDLMDKNVADMSHCTTLVLDEADKLLSQDFQGILDRVIKFLPPDRQI 213

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L+SAT    +    +  ++NP  I +    +     ++     Y Q  +K   L  L +
Sbjct: 214 MLYSATFPLTVATFMQKHMRNPYEINLMEELTLVGVTQY---YAYVQEKQKVHCLNTLFR 270

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F++G  + +V
Sbjct: 271 KLQ-INQSIIFCNSTQRVELLAKKITEIGYSCYYIHSRMAQGHRNRVFHDFRKGACRNLV 329

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  I
Sbjct: 330 CSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGIAINLITYEDRFTLRRI 389

Query: 361 EKLIEKKV 368
           E  +  ++
Sbjct: 390 EAELRTRI 397


>gi|156096943|ref|XP_001614505.1| ATP-dependent RNA helicase [Plasmodium vivax SaI-1]
 gi|148803379|gb|EDL44778.1| ATP-dependent RNA helicase, putative [Plasmodium vivax]
          Length = 433

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 117/360 (32%), Positives = 189/360 (52%), Gaps = 7/360 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + GY KP+PIQ ++IP+ L   ++   A+ GTGKTA+F +P+L 
Sbjct: 61  EFEDYFLKRELLMGIFEKGYEKPSPIQEESIPVALAGKNILARAKNGTGKTAAFAIPLL- 119

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             EK        + LIL PTRELA Q +   ++ GK+  +   +  GG        +L  
Sbjct: 120 --EKCNTHKNFIQGLILVPTRELALQTSAMIKELGKHMKIQCMVTTGGTSLREDIMRLYN 177

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L  TPGRILD  N+    ++   I+V+DEAD++L   F P ++ +   +P  +Q L
Sbjct: 178 VVHILCGTPGRILDLANKDVANLSGCHIMVMDEADKLLSPEFQPIVEELMKFLPKEKQIL 237

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           ++SAT    +++  + +L +   I +     T + I   +   + +  +K   L  L  +
Sbjct: 238 MYSATFPVTVKEFRQIYLSDAHEINL-MDELTLKGITQYYA--FVKERQKVHCLNTLF-A 293

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 294 KLQINQAIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFRNGACRCLVS 353

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  L+  ED  ++  IE
Sbjct: 354 SDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINLITYEDRFNLYKIE 413


>gi|116494326|ref|YP_806060.1| superfamily II DNA/RNA helicase [Lactobacillus casei ATCC 334]
 gi|116104476|gb|ABJ69618.1| Superfamily II DNA and RNA helicase [Lactobacillus casei ATCC 334]
          Length = 448

 Score =  199 bits (505), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 125/351 (35%), Positives = 193/351 (54%), Gaps = 14/351 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L P V+  +       PTPIQ K IP +L+  ++ G +QTG+GKT +F++P+L++
Sbjct: 5   FKQFQLKPFVIDGLNAMAITAPTPIQQKVIPALLRGENIVGQSQTGSGKTHAFLVPLLSM 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE- 120
           ++      ++   +I  P+RELA Q+    ++  +    + +  L+GG+  + Q  KL+ 
Sbjct: 65  VDPTEDATQV---VITAPSRELANQIYAVAQQLIQTEPVIRINRLVGGMDKQKQIDKLQN 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V I TPGRILD      L+ +++   V+DEAD  LDMGF+  +  I S  P   Q 
Sbjct: 122 HQPHVAIGTPGRILDMIKSYDLVPSSVRHFVVDEADMTLDMGFLETVDAIASSFPDHLQM 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT+  +L+     ++ NP  IE+   S  A+T+E+  +A  A+   K  L+ QL+ 
Sbjct: 182 AVFSATIPQKLEPFLRKYMDNPTTIELKPQSVIADTVENILIA--AKGRDKNELIYQLV- 238

Query: 241 SQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              TM +    +IF N K +V  +   L+ QG  V  IHG I  R R +++ +  +   Q
Sbjct: 239 ---TMGHPFLVLIFANTKTSVDAIHDFLKHQGLKVAKIHGGIQPRERRRVMKDVADLKYQ 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +VA+DLAARG+DI  V  V N ++P   E +IHR+GRTGR G  G A TL
Sbjct: 296 YVVATDLAARGIDIKGVSMVINAEIPRDNEFFIHRVGRTGRNGMAGTAVTL 346


>gi|306829191|ref|ZP_07462381.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           mitis ATCC 6249]
 gi|304428277|gb|EFM31367.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           mitis ATCC 6249]
          Length = 454

 Score =  199 bits (505), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 124/366 (33%), Positives = 192/366 (52%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 8   MSFTKFQFKNYIAEALEELKFETPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 67

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118
             L++    V+    +I  P+RELA Q+     +   + ++ V ++  +GG     Q  K
Sbjct: 68  QQLDETSDSVQ---AVITAPSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKARQIDK 124

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L      ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 125 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +   K A + +
Sbjct: 185 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGR--DKNAQIYE 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L Q+       +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 243 LTQAMQPYL-AMIFVNTKTRADELHTYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 302 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGIAITLYQPSDDSDI 361

Query: 358 DAIEKL 363
             +EKL
Sbjct: 362 RELEKL 367


Searching..................................................done


Results from round 2




>gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040059|gb|ACT56855.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 465

 Score =  403 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 465/465 (100%), Positives = 465/465 (100%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML
Sbjct: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE
Sbjct: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT
Sbjct: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ
Sbjct: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV
Sbjct: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI
Sbjct: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI
Sbjct: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDKL 465
           PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDKL
Sbjct: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDKL 465


>gi|315122206|ref|YP_004062695.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495608|gb|ADR52207.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 459

 Score =  307 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 369/458 (80%), Positives = 406/458 (88%), Gaps = 1/458 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+DLGLSPKVVCAV DAGYV PTPIQ+KTIPLVLQRHDVCGIAQTGTGKTASFVLPML
Sbjct: 1   MNFSDLGLSPKVVCAVADAGYVDPTPIQVKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           TILEKGRAR RMPRTLILEPTRELA+QVADNF+KYGKNYNL +ALLIGGIPFE QNKKLE
Sbjct: 61  TILEKGRARARMPRTLILEPTRELASQVADNFQKYGKNYNLNIALLIGGIPFETQNKKLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP IQ+ITSL+PFTRQT
Sbjct: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPDIQSITSLIPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATMT+ELQKVSE FLQNPKRIEVNTP STAETIEHCFVATY QYSKK  L+Q+L++
Sbjct: 181 LLFSATMTEELQKVSEKFLQNPKRIEVNTPYSTAETIEHCFVATYPQYSKKFGLVQKLIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD +KN IIFCNQKK+V +LC +LEKQGFSVCAIHGN+DQRSR+KIL +FKEGTIQLMV
Sbjct: 241 EQDAIKNAIIFCNQKKDVASLCCALEKQGFSVCAIHGNMDQRSRIKILDSFKEGTIQLMV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASDLAARGLDIPDVGHVFNFDVPNR ENYIHRIGRTGRAGR GKAFTLV  ED+K+IDAI
Sbjct: 301 ASDLAARGLDIPDVGHVFNFDVPNRPENYIHRIGRTGRAGRSGKAFTLVTSEDVKYIDAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EKLIEKK+ WL+GDLS+L P  EK+D  Q ++  KN  I   ST    +KK YSSQ S I
Sbjct: 361 EKLIEKKISWLDGDLSTLQPS-EKLDETQRSNTTKNKNIQNTSTKLSHKKKKYSSQTSRI 419

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
           P KE   IS+  QD QE+D  ++GF+GN+PAFMLP+ +
Sbjct: 420 PSKEEVVISQPYQDTQEHDIGAVGFKGNVPAFMLPREK 457


>gi|319408422|emb|CBI82077.1| ATP-dependent RNA helicase [Bartonella schoenbuchensis R1]
          Length = 470

 Score =  242 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 255/464 (54%), Positives = 318/464 (68%), Gaps = 6/464 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGLS KV+ AV  AGY  PTPIQ +TIP VLQR DV GIAQTGTGKTASFVLPMLT
Sbjct: 7   SFDDLGLSEKVIKAVRSAGYTAPTPIQSETIPHVLQRKDVLGIAQTGTGKTASFVLPMLT 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQV +NF+KYG N+ L V LLIGG+ FE QN+KLE+
Sbjct: 67  LLEKGRARARMPRTLILEPTRELAAQVQENFDKYGLNHRLNVVLLIGGVSFEDQNRKLEQ 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLI TPGR+LDHF RGKLL+   EILVIDEADRMLDMGFIP I+ I  L PFTRQTL
Sbjct: 127 GADVLIATPGRLLDHFERGKLLLIGTEILVIDEADRMLDMGFIPDIERICKLTPFTRQTL 186

Query: 182 LFSATMTDELQKVSENF-LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            FSATM  E+ K++E F             S+     +    +    + K+  L + +  
Sbjct: 187 FFSATMAPEITKLTEQFLHSPICVEVTKASSTATTITQRLVKSGSKAWDKRAVLRELIDN 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +KN IIFCN+KK++  L  SL K  FSV A+HG++DQ SRM  L++FK+  + L+V
Sbjct: 247 EGDELKNAIIFCNRKKDISELFRSLTKYNFSVGALHGDMDQHSRMNTLADFKDNKLTLLV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFN+DVP  AE+YIHRIGRTGRA R GKAFT+V  +D K+I AI
Sbjct: 307 ASDVAARGLDIPDVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTHDDQKYISAI 366

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST----GFDRRKKNYSSQ 416
           EK+ ++K++WLNGDLS+L+   +  D        K+  + +KST        +K +   +
Sbjct: 367 EKISKEKIEWLNGDLSTLSISDQTNDSNDSIVKTKSAKLSKKSTPKKHTAHTKKASKEDK 426

Query: 417 KSHIPLKESE-KISKLQQDIQENDADSLGFRGNMPAFMLPKNRG 459
            SH    +++    +L    ++ +   LGF  ++PAFML K R 
Sbjct: 427 TSHSKTTKNKINSPELSHSEKDQNHTPLGFGADVPAFMLIKTRS 470


>gi|319899018|ref|YP_004159111.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
 gi|319402982|emb|CBI76535.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
          Length = 454

 Score =  240 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 244/458 (53%), Positives = 316/458 (68%), Gaps = 12/458 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS KV+ A+   GY  PTPIQ  TIP +LQ+ DV GIAQTGTGKTASFVLPMLT
Sbjct: 7   SFDNLGLSKKVIKAIKSVGYTTPTPIQSATIPHILQKKDVLGIAQTGTGKTASFVLPMLT 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR R+PRTLILEPTRELAAQV +N++KYG ++NL VALLIGG+ FE Q++KLER
Sbjct: 67  LLEKGRARARIPRTLILEPTRELAAQVKENYDKYGIHHNLNVALLIGGVSFEHQDRKLER 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GAD+LI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L PFTRQTL
Sbjct: 127 GADILIATPGRLLDHFERGKLLLVGVEILVIDEADRMLDMGFIPNIERICKLTPFTRQTL 186

Query: 182 LFSATMTDELQKVSENF-LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            FSATM  E+ ++++ F           T S+     +    +    + K+  L + + +
Sbjct: 187 FFSATMAPEITQLTKKFLHSPIYVEITKTFSTAKTITQRLVKSGSKPWDKRAILRELIHK 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +KN IIFCN+KK++  L  SL K  FSV A+HG++DQ SR   L+NFK+  + L+V
Sbjct: 247 EGDELKNAIIFCNRKKDISELFRSLVKHNFSVGALHGDMDQHSRTNTLANFKDNKLTLLV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFN+DVP  AE+YIHRIGRTGRA R+GKAFT+V K D K+I+AI
Sbjct: 307 ASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRNGKAFTIVTKADEKYINAI 366

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E++ ++K++WLNGDLS+L    E            N+ I +      R+K      K+  
Sbjct: 367 EEISKEKIEWLNGDLSTLIAHDET-----------NDTISKAKPTKSRQKTAQKEHKTQT 415

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
                ++ S  Q+  +  ++  +GF  ++PAFML KN+
Sbjct: 416 KKMLKKQKSSNQRHEKNKNSIPIGFGNDIPAFMLIKNQ 453


>gi|116252340|ref|YP_768178.1| cold-shock DeaD-box protein A (ATP-dependent RNA helicase)
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256988|emb|CAK08082.1| putative cold-shock DeaD-box protein A (ATP-dependent RNA helicase)
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 521

 Score =  240 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 286/513 (55%), Positives = 356/513 (69%), Gaps = 53/513 (10%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS KV+ AV DAGY  PTPIQ   IP  L+R D+CGIAQTGTGKTASFVLPML+
Sbjct: 9   TFADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLS 68

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLER
Sbjct: 69  LLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLER 128

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I  ++PFTRQTL
Sbjct: 129 GADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTL 188

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+QK+++ FLQNP+RIEV  P+S A T+   FVA++ +  +K A+L++L+++
Sbjct: 189 FFSATMPSEIQKLADRFLQNPERIEVAKPASAAATVTQRFVASHGKDYEKRAVLRELVRA 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q  +KN IIFCN+KK+V +L  SLE+ GFSV A+HG++DQRSR   L +F++G +QL+VA
Sbjct: 249 QTELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTLQSFRDGNLQLLVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  +E+Y+HRIGRTGRAGR G AFTLV K D K +DAIE
Sbjct: 309 SDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKFVDAIE 368

Query: 362 KLIEKKVDWLNGDLSSLNPPLE------------KIDIAQHNHARKNNPIP--QKSTGFD 407
           KLI +KV+WL+GDL+SL PP E            +   A+    R   P     K  G  
Sbjct: 369 KLIGQKVEWLSGDLTSLPPPAEDSRDSERPRRNSRERGARDGAGRDRAPRENGDKDRGRG 428

Query: 408 RRKKNYSSQKSHIPLKES---------------EKISKLQQDIQENDAD----------- 441
           R  +  +S KS I ++++               +   K +Q  Q N  +           
Sbjct: 429 RGNRAAASHKSDIDIQDNGVDVIEAAPVKADIVKNERKAEQKPQNNARNNRPYPANDDSR 488

Query: 442 -------------SLGFRGNMPAFMLPKNRGKL 461
                         +GF  ++PAFML     K+
Sbjct: 489 DRRRHRDHDDGPTPVGFGDDIPAFMLIAGSAKV 521


>gi|328543973|ref|YP_004304082.1| DEAD/DEAH box helicase [polymorphum gilvum SL003B-26A1]
 gi|326413717|gb|ADZ70780.1| DEAD/DEAH box helicase domain protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 486

 Score =  239 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 260/486 (53%), Positives = 329/486 (67%), Gaps = 23/486 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS KV+ AV  AGY +PT IQ   IP VL+R DV GIAQTGTGKTASF LPML
Sbjct: 1   MSFDSLGLSEKVLSAVKAAGYTEPTAIQAGAIPQVLERRDVLGIAQTGTGKTASFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV +NFEKYG N+ L VALLIGG+ F  Q++K++
Sbjct: 61  TLLEKGRARARMPRTLILEPTRELAAQVEENFEKYGVNHKLNVALLIGGVSFADQDRKID 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGADVLI TPGR+LDH  RGKL++  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQT
Sbjct: 121 RGADVLIATPGRLLDHVERGKLMLQGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+Q+++E FLQNP +IEV   SSTAE +    VA  +   +K A L++LL 
Sbjct: 181 LFFSATMPPEIQRLTETFLQNPAKIEVAPRSSTAENVTQYIVAAGSVDFEKRAKLRELLG 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +KN I+FCN+K++V  L  SLE+ GF+V  +HG++DQR+RM+ L +F++GT+ L+V
Sbjct: 241 EAEDLKNAIVFCNRKRDVTTLFRSLERHGFNVGCLHGDMDQRTRMQTLESFRKGTLTLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR G ++TLV  ED K++ AI
Sbjct: 301 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGVSYTLVTGEDSKYLSAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA-----------RKNNPIPQKSTGFDRR 409
           EKLI K + WL   L       E+ +  +               R+    PQKS   + R
Sbjct: 361 EKLINKSITWLGEPLDFEAAEAERKERRRAGKGTGRTARGGAEKREPGEKPQKSRAGEPR 420

Query: 410 -----------KKNYSSQKSHIPLKESEKISKLQQDI-QENDADSLGFRGNMPAFMLPKN 457
                      K+  +   S    K +   S+ ++D   E D   +G   ++PAF+L + 
Sbjct: 421 RALDKDEGGAPKRERTRASSARDAKPARDRSEPRRDRSHETDEPVIGLGSHVPAFLLREP 480

Query: 458 RGKLND 463
           R K   
Sbjct: 481 RPKGAS 486


>gi|241204840|ref|YP_002975936.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858730|gb|ACS56397.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 521

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 285/513 (55%), Positives = 356/513 (69%), Gaps = 53/513 (10%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS KV+ AV DAGY  PTPIQ   IP  L+R D+CGIAQTGTGKTASFVLPML+
Sbjct: 9   TFADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLS 68

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLER
Sbjct: 69  LLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLER 128

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I  ++PFTRQTL
Sbjct: 129 GADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTL 188

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+QK+++ FLQNP+RIEV  P+S AET+   FVA++ +  +K A+L++L+++
Sbjct: 189 FFSATMPSEIQKLADRFLQNPERIEVAKPASAAETVTQRFVASHGKDYEKRAVLRELVRA 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q  +KN I+FCN+KK+V +L  SLE+ GFSV A+HG++DQRSR   L +F++G +QL+VA
Sbjct: 249 QTELKNAIVFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTLQSFRDGNLQLLVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  +E+Y+HRIGRTGRAGR G AFTLV K D K +DAIE
Sbjct: 309 SDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKFVDAIE 368

Query: 362 KLIEKKVDWLNGDLSSLNPPLE------------KIDIAQHNHARKNNPIP--QKSTGFD 407
           KLI +KV+WL+GDL+SL PP E            +   A+    R   P     K  G  
Sbjct: 369 KLIGEKVEWLSGDLTSLPPPAEDSRDSERPRRNGRERGARDGAGRDRAPRENGDKDRGRG 428

Query: 408 RRKKNYSSQKSHIPLKES---------------EKISKLQQDIQENDAD----------- 441
           R  +  +S KS   ++++               +   K +Q  Q N  +           
Sbjct: 429 RGNRAAASHKSDNDIQDNGVDVIEAAPVKADIVKNERKAEQKPQNNARNSRPYPANDDSR 488

Query: 442 -------------SLGFRGNMPAFMLPKNRGKL 461
                         +GF  ++PAFML     K+
Sbjct: 489 DRRRHRDHDDGPTPVGFGDDIPAFMLIAGSAKV 521


>gi|319407348|emb|CBI80993.1| ATP-dependent RNA helicase [Bartonella sp. 1-1C]
          Length = 501

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 249/458 (54%), Positives = 324/458 (70%), Gaps = 2/458 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGLS KV+ A+  AGY  PTPIQ +TIP +LQ+ DV GIAQTGTGKTASFVLPMLT
Sbjct: 39  NFDNLGLSKKVIKAIKSAGYTIPTPIQSRTIPYILQKKDVLGIAQTGTGKTASFVLPMLT 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR R+PRTLILEPTRELAAQV +NF+KYG N+NL VALLIGG+ FE Q++KLER
Sbjct: 99  LLEKGRARARIPRTLILEPTRELAAQVKENFDKYGVNHNLNVALLIGGVSFEHQDRKLER 158

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLI TPGR+LDHF RGKLL+  +EILVIDEADRML+MGFIP ++ I  + PFTRQTL
Sbjct: 159 GADVLIATPGRLLDHFERGKLLLVGVEILVIDEADRMLNMGFIPDVERICKVTPFTRQTL 218

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQ 240
            FSATM  E+ ++++ FL +P  IE+   SSTA+TI      +      KK  L + +  
Sbjct: 219 FFSATMAPEITQLTKQFLHSPVYIEITEASSTAKTITQRLVKSESKPCDKKAVLKELIQN 278

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +KN IIFCN+KK++  L   L K  FSV  +HG++DQ SR   L++FK     L++
Sbjct: 279 EGDELKNAIIFCNRKKDISELFQYLIKHNFSVGTLHGDMDQHSRTNTLASFKNNKFILLI 338

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFN+DVP  AE+YIHRIGRTGRA R GKAFT+V K D K+I AI
Sbjct: 339 ASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTKADEKYICAI 398

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKID-IAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           E++ ++K++WLNGDLS+L    E+ + +++    +      QK      +K     + ++
Sbjct: 399 EEISKEKIEWLNGDLSTLIAHDEENNTVSKTKPTKSQQKTAQKERKTQTKKIPEKEKSAY 458

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
           I  K++++ S  +   +      +GF  ++PAFML KN
Sbjct: 459 IETKDNKEKSSNKCHEKNKSPIPIGFGADIPAFMLIKN 496


>gi|222086115|ref|YP_002544647.1| ATP dependent RNA helicase protein [Agrobacterium radiobacter K84]
 gi|221723563|gb|ACM26719.1| ATP dependent RNA helicase protein [Agrobacterium radiobacter K84]
          Length = 506

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 282/498 (56%), Positives = 350/498 (70%), Gaps = 44/498 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS KV+ AV DAGY  PTPIQ   IP  LQR D+CGIAQTGTGKTASFVLPMLT
Sbjct: 3   TFADLGLSQKVLSAVTDAGYTTPTPIQAGAIPFALQRRDICGIAQTGTGKTASFVLPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L +ALLIGG+ FE Q++KLER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNIALLIGGVSFEEQDRKLER 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLICTPGR+LDHF RGKLLM+ +EI VIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 123 GADVLICTPGRLLDHFERGKLLMSAVEIFVIDEADRMLDMGFIPDIERIAKLIPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+QK+++ FLQNP+R+EV+ P+STA+T+   FVA++ +  +K A L+ L+++
Sbjct: 183 FFSATMPAEIQKLADRFLQNPERVEVSAPASTAKTVTQRFVASHGKDYEKRAALRDLIRA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q  +KN IIFCN+K +V +L  SL++ GFSV A+HG++DQRSR  +L NF++G IQL+VA
Sbjct: 243 QTDLKNAIIFCNRKVDVADLFRSLQRHGFSVGALHGDMDQRSRTTMLQNFRDGQIQLLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLD+PDVGHVFNFDVP  +E+Y+HRIGRTGRAGR G AFTLV K D KHIDAIE
Sbjct: 303 SDVAARGLDLPDVGHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKHIDAIE 362

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN------------------------ 397
           KLI + V WLNGDLS+L P  E  D  + +  R+                          
Sbjct: 363 KLIGEDVQWLNGDLSALPPAEEGGDDNRSSRRREPKGKGRERDRSPRGRSASSHKSDIDV 422

Query: 398 ----------PIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQD----------IQE 437
                       P K+      +K+ ++ KSH   + + +      D            +
Sbjct: 423 EDNVVVEVIEAAPAKAESVRNERKSENNNKSHNGSRNNNRPFPAANDDNRERRNRYRDHD 482

Query: 438 NDADSLGFRGNMPAFMLP 455
           +    +GF  ++PAFML 
Sbjct: 483 DGPTPVGFGDDIPAFMLI 500


>gi|327191069|gb|EGE58122.1| ATP-dependent RNA helicase protein [Rhizobium etli CNPAF512]
          Length = 499

 Score =  237 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 282/497 (56%), Positives = 354/497 (71%), Gaps = 37/497 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS KV+ AV DAGY  PTPIQ   IP  L+R D+CGIAQTGTGKTASFVLPML+
Sbjct: 3   TFADLGLSQKVLSAVADAGYSTPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLS 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLER 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 123 GADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+QK+++ FLQNP+R+EV  P+S A+T+   FVA++++  +K A+L++L+++
Sbjct: 183 FFSATMPPEIQKLADRFLQNPERVEVAKPASAAKTVTQRFVASHSKDYEKRAVLRELVRA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q  +KN IIFCN+KK+V +L  SLE+ GFSV A+HG++DQRSR  +L NF++G +QL+VA
Sbjct: 243 QGELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTTMLQNFRDGNLQLLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  +E+Y+HRIGRTGRAGR G AFTLV K D K +DAIE
Sbjct: 303 SDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKFVDAIE 362

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQ-HNHARKNNPIPQKSTGFDRRKKNYSS----- 415
           KLI +KV+WLNGDL+SL P  E  D  +   H R+     +     +R   ++ S     
Sbjct: 363 KLIGEKVEWLNGDLNSLPPAEEGKDSDRPRRHGRERGDKDRGRGRGNRGAASHKSDNDIQ 422

Query: 416 -----------QKSHIPLKESEKISKLQQDIQENDAD--------------------SLG 444
                       ++ +   E +   K Q + + N                        +G
Sbjct: 423 DNDVQVIEAAPARAEVLKNERKAEQKPQNNARNNRPYPANDDSRDRRRHRDHDDGPTPVG 482

Query: 445 FRGNMPAFMLPKNRGKL 461
           F  ++PAFML     K+
Sbjct: 483 FGDDIPAFMLIAGSAKV 499


>gi|325293235|ref|YP_004279099.1| ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
 gi|325061088|gb|ADY64779.1| ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
          Length = 533

 Score =  237 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 275/496 (55%), Positives = 340/496 (68%), Gaps = 42/496 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLGLS KV+ A+ DAGY  PTPIQ   IP  L++ D+CGIAQTGTGKTASFVLPMLT
Sbjct: 32  TFSDLGLSQKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPMLT 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLER
Sbjct: 92  LLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLER 151

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLICTPGR+LDH  RGKLLM  +EILVIDEADRMLDMGFIP I+ I  ++PFTRQTL
Sbjct: 152 GADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTL 211

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQLLQ 240
            FSATM  E+QK+++ FLQNP RIEV  PSSTA+T+    V +    Y K+  L   +  
Sbjct: 212 FFSATMPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVASHNKDYEKRAVLRDLVRA 271

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  +KN IIFCN+KK+V +L  SL++ GFSV A+HG++DQRSR  +L NF++G + L+V
Sbjct: 272 EEAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQLTLLV 331

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFTLV K D K++DAI
Sbjct: 332 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAKYLDAI 391

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN---------------NPIPQKSTG 405
           EKLI +KV+WLNGDLSSL  P+E  +        K                +P+   + G
Sbjct: 392 EKLITEKVEWLNGDLSSLPAPMESFESNTGRRGTKERGGRGRDRNRRDAPASPVENINQG 451

Query: 406 FDR-----------RKKNYSSQKSHIPLKESEKISKLQQDIQ---------------END 439
                           K  + ++     + SE+ S+    +                ++ 
Sbjct: 452 AQSTTVDTDIAAHGEDKVKAERRPEKTPRNSERNSRNLNPLHANDDNRDRRRHYRDHDDG 511

Query: 440 ADSLGFRGNMPAFMLP 455
              +GF  ++PAFML 
Sbjct: 512 PTPVGFGDDIPAFMLI 527


>gi|15889136|ref|NP_354817.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
 gi|15156946|gb|AAK87602.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
          Length = 503

 Score =  237 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 276/498 (55%), Positives = 339/498 (68%), Gaps = 47/498 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLGLS KV+ A+ DAGY  PTPIQ   IP  L++ D+CGIAQTGTGKTASFVLPMLT
Sbjct: 3   TFSDLGLSQKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLER 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLICTPGR+LDH  RGKLLM  +EILVIDEADRMLDMGFIP I+ I  ++PFTRQTL
Sbjct: 123 GADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-TYAQYSKKCALLQQLLQ 240
            FSATM  E+QK+++ FLQNP RIEV  PSSTA+T+    VA     Y K+  L   +  
Sbjct: 183 FFSATMPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVAAHNKDYEKRAVLRDLVRA 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  +KN IIFCN+KK+V +L  SL++ GFSV A+HG++DQRSR  +L NF++G + L+V
Sbjct: 243 EEAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQLTLLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFTLV K D K++DAI
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAKYLDAI 362

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE------------------------------------- 383
           EKLI +K++WL+GDLSSL  P+E                                     
Sbjct: 363 EKLIAEKIEWLSGDLSSLPAPMESFESNSGRRGTKERSGRGRDRNRRDAPASPVENINQD 422

Query: 384 -----KIDIAQHNHAR-KNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQE 437
                  DIA H   + K    P+K+     R    S   + +   +  +  +      +
Sbjct: 423 AQSVVDTDIAAHGEDKVKAERRPEKTPRNSERN---SRNLNSLHANDDNRDRRRHYRDHD 479

Query: 438 NDADSLGFRGNMPAFMLP 455
           +    +GF  ++PAFML 
Sbjct: 480 DGPTPVGFGDDIPAFMLI 497


>gi|188583653|ref|YP_001927098.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
 gi|179347151|gb|ACB82563.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
          Length = 501

 Score =  237 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 256/499 (51%), Positives = 331/499 (66%), Gaps = 39/499 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS KV+ AV  AGY +PTPIQ + IP VL R DV GIAQTGTGKTA+F LPML
Sbjct: 1   MSFADLGLSDKVLQAVSAAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LE GRAR RMPRTLILEPTRELAAQV +NFE+YG N+ L VAL+IGG+ F  Q+ KL 
Sbjct: 61  TMLETGRARARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDHF RGKLL+  +E+LVIDEADRMLDMGFIP I+ I  +VPFTRQT
Sbjct: 121 RGTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++++++ FL NP+R+EV  PSSTA TIE   VAT A+  +K  +L+ L++
Sbjct: 181 LFFSATMPPEIERLADMFLHNPQRVEVARPSSTATTIEQRLVATGAEGHEKRKILRHLIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S D ++NGIIFCN+K++V  L  SL   GF+V A+HG++DQR+R   L  F+ G + L+V
Sbjct: 241 SADELQNGIIFCNRKRDVALLQKSLASHGFNVAALHGDMDQRARTAALDGFRSGEVPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFNFDVP+  E+Y+HRIGRTGRAGR G AFTL ++ D + + AI
Sbjct: 301 ASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRAGHAFTLASRADERSLAAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE------------------KIDIAQHNHARKNNPIPQK 402
           E LI + ++WL+GDLS++    E                    +      A +    P +
Sbjct: 361 ESLIGRPIEWLDGDLSTVTDDTEGDEPRRRRGTRRARGSEKGSERGAEKAAERTAERPSE 420

Query: 403 STGFDRRK----KNYSSQKSHIPLKESE----------------KISKLQQDIQENDADS 442
           S     R+    ++   +    P++E+E                +  +      E+D   
Sbjct: 421 SRSRGGRRPASGRSRGEESGREPIREAEPVSPAREPARSAPDRARSERRPPRRDEDDDTP 480

Query: 443 LGFRGNMPAFML-PKNRGK 460
           +G   ++PAF+L P   GK
Sbjct: 481 VGLGSHVPAFLLKPTGFGK 499


>gi|319404344|emb|CBI77941.1| ATP-dependent RNA helicase [Bartonella rochalimae ATCC BAA-1498]
          Length = 466

 Score =  236 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 251/458 (54%), Positives = 325/458 (70%), Gaps = 2/458 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGLS KV+ A+  AGY  PTPIQ +TIP +LQ+ DV GIAQTGTGKTASFVLPMLT
Sbjct: 7   NFDNLGLSKKVIKAIKSAGYTIPTPIQSRTIPHILQKKDVLGIAQTGTGKTASFVLPMLT 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR R+PRTLILEPTRELAAQV +NF+KYG N+NL VALLIGG+ FE Q++KLER
Sbjct: 67  LLEKGRARARIPRTLILEPTRELAAQVKENFDKYGVNHNLNVALLIGGVSFEHQDRKLER 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLI TPGR+LDHF RGKLL+  +EILVIDEADRML+MGFIP ++ I  + PFTRQTL
Sbjct: 127 GADVLIATPGRLLDHFERGKLLLVGVEILVIDEADRMLNMGFIPDVERICKVTPFTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQ 240
            FSATM  E+ ++++ FL +P  IE+   SSTA+TI      +      KK  L + +  
Sbjct: 187 FFSATMAPEIAQLTKQFLHSPVYIEITEASSTAKTITQRLVKSGSKSCDKKAVLKELIQN 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +KN IIFCN+KK++  L   L K  FSV  +HG++DQ SR   L++FK     L++
Sbjct: 247 EGDELKNAIIFCNRKKDISELFQYLIKHNFSVGTLHGDMDQHSRTNTLASFKNNKFILLI 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFN+DVP  AE+YIHRIGRTGRA R GKAFT+V K D K+I AI
Sbjct: 307 ASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTKADEKYIRAI 366

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKID-IAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           E++ ++K++WLNGDLS+L    E+ D +++    +      QK      +K     + ++
Sbjct: 367 EEISKEKIEWLNGDLSTLIAHDEENDTVSKTKPTKSQQKTAQKKRKTQTKKILEKEKSAY 426

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
           I  K++++ S  +   + N    +GF  ++PAFML KN
Sbjct: 427 IETKDNKEKSSNKCHEKNNSPIPIGFGDDIPAFMLIKN 464


>gi|86357880|ref|YP_469772.1| ATP dependent RNA helicase protein [Rhizobium etli CFN 42]
 gi|86281982|gb|ABC91045.1| ATP dependent RNA helicase protein [Rhizobium etli CFN 42]
          Length = 527

 Score =  236 bits (600), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 283/503 (56%), Positives = 353/503 (70%), Gaps = 43/503 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS KV+ AV DAGY  PTPIQ   IP  L+R D+CGIAQTGTGKTASFVLPML+
Sbjct: 25  TFADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLS 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLER
Sbjct: 85  LLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLER 144

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 145 GADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTL 204

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+QK+++ FLQNP+RIEV  P+S A+T+   FVA++++  +K A+L++L+++
Sbjct: 205 FFSATMPPEIQKLADRFLQNPERIEVARPASAAKTVTQRFVASHSKDYEKRAVLRELVRA 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q  +KN IIFCN+KK+V +L  SLE+ GF+V A+HG++DQRSR  +L NF++G +QL+VA
Sbjct: 265 QTELKNAIIFCNRKKDVADLFRSLERHGFNVGALHGDMDQRSRTMMLQNFRDGNLQLLVA 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  +E+Y+HRIGRTGRAGR G AFTLV K D K +DAIE
Sbjct: 325 SDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKFVDAIE 384

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKI--DIAQHNHARKNNPIPQKSTGFDRRKKNYSS---- 415
           KLI +KV+WLNGDL+SL P  E    D  + N   +     +      R + N S+    
Sbjct: 385 KLIGEKVEWLNGDLNSLPPAEESADSDRPRRNSRERGAKGERGERDRGRGRGNRSAAGHK 444

Query: 416 -----------------QKSHIPLKESEKISKLQQDIQENDAD----------------- 441
                             K+ +   E +   K Q + + N                    
Sbjct: 445 SDNDIQDSDVQVIAAAPAKAEVVKNERKAEQKPQNNARNNRPYPANDDSRDRRRHRDHDD 504

Query: 442 ---SLGFRGNMPAFMLPKNRGKL 461
               +GF  ++PAFML     K+
Sbjct: 505 GPTPVGFGDDIPAFMLIAGSAKV 527


>gi|15965498|ref|NP_385851.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
           1021]
 gi|307302618|ref|ZP_07582374.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
 gi|307318465|ref|ZP_07597899.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
 gi|15074679|emb|CAC46324.1| Putative ATP-dependent RNA helicase [Sinorhizobium meliloti 1021]
 gi|306895805|gb|EFN26557.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
 gi|306902982|gb|EFN33573.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 499

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 279/493 (56%), Positives = 349/493 (70%), Gaps = 39/493 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FADLGLS KV+ AV DAGY  PTPIQ+  IP  LQR D+ GIAQTGTGKTASFVLPMLT
Sbjct: 3   NFADLGLSQKVLSAVTDAGYTIPTPIQVGAIPPALQRRDILGIAQTGTGKTASFVLPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQVA+NF+KYGKN+ L +ALLIGG+ F+ Q++KLER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLER 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLICTPGR+LDH  RGKLLM  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 123 GADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+QK+++ FLQNP+R+EV   SSTA T+   FVA + +  +K A+L++L++S
Sbjct: 183 FFSATMPPEIQKLADRFLQNPERLEVARRSSTAITVTQRFVAAHGKDYEKRAVLRELIRS 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q+ +KN IIFCN+KK+V  L  SL++ GFSV A+HG++DQRSRM +L+NFK+G I+L+VA
Sbjct: 243 QEDLKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDGNIKLLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR G AFT+V K + K  DAIE
Sbjct: 303 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGAAFTIVTKRETKFSDAIE 362

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA--RKNNPIPQKSTGFDRRK-----KNYS 414
           KLI +KV+W NGDLS L  P+E  D  +   +  RK+    +       RK      N +
Sbjct: 363 KLIGQKVEWFNGDLSELPEPMESHDSRRDRGSDGRKDRKRERPGKVHADRKPVTASGNNT 422

Query: 415 SQKSHIPLK-ESEKISKLQQDIQENDAD-------------------------------S 442
            +   +P + ++ KI +       ++                                  
Sbjct: 423 EELETVPERVDAVKIERNADSKDRHNGRSDRPGRAQNAANDDNRDRRQRNRRDHDDGPTP 482

Query: 443 LGFRGNMPAFMLP 455
           +GF  ++PAFML 
Sbjct: 483 VGFGDDIPAFMLI 495


>gi|150396691|ref|YP_001327158.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150028206|gb|ABR60323.1| DEAD/DEAH box helicase domain protein [Sinorhizobium medicae
           WSM419]
          Length = 499

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 280/498 (56%), Positives = 348/498 (69%), Gaps = 49/498 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FADLGLS KV+ AV DAGY  PTPIQI  IP  LQR D+ GIAQTGTGKTASFVLPMLT
Sbjct: 3   NFADLGLSQKVLSAVTDAGYTIPTPIQIGAIPPALQRRDILGIAQTGTGKTASFVLPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQVA+NF+KYGKN+ L +ALLIGG+ F+ Q++KLER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLER 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLICTPGR+LDH  RGKLLM+ +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 123 GADVLICTPGRLLDHCERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+QK+++ FLQNP+R+EV   SSTA T+    VA + +  +K A+L++L++S
Sbjct: 183 FFSATMPPEIQKLADRFLQNPERVEVARRSSTAITVTQRLVAAHGKDYEKRAVLRELIRS 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q+ +KN IIFCN+KK+V  L  SL++ GFSV A+HG++DQRSRM +L+NFK+G I+L+VA
Sbjct: 243 QEDLKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDGNIKLLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR G +FT+V K DIK  DAIE
Sbjct: 303 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGASFTIVTKRDIKFADAIE 362

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           KLI ++V+W NGDLS L  P+E      H+  R      +K    +R  K  S  K+   
Sbjct: 363 KLIGQEVEWHNGDLSELPEPME-----SHDSRRDRGSDGRKDRKRERPVKTRSDHKAVTA 417

Query: 422 LK----------ESEKISKLQQDIQEND-------------------------------- 439
           +           E     K++++ +  D                                
Sbjct: 418 VDNNTEELETVPERVDTVKIERNAESKDRHNGRSDRPGRAQNAANDDNRDRRQRHRRDHD 477

Query: 440 --ADSLGFRGNMPAFMLP 455
                +GF  ++PAFML 
Sbjct: 478 DGPTPVGFGDDIPAFMLI 495


>gi|254706857|ref|ZP_05168685.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis
           M163/99/10]
 gi|254710035|ref|ZP_05171846.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis B2/94]
 gi|254714037|ref|ZP_05175848.1| ATP-dependent RNA helicase DDX17 [Brucella ceti M644/93/1]
 gi|254716905|ref|ZP_05178716.1| ATP-dependent RNA helicase DDX17 [Brucella ceti M13/05/1]
 gi|256031530|ref|ZP_05445144.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis M292/94/1]
 gi|261218712|ref|ZP_05932993.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261314321|ref|ZP_05953518.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|261317582|ref|ZP_05956779.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261321790|ref|ZP_05960987.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|265988616|ref|ZP_06101173.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M292/94/1]
 gi|260923801|gb|EEX90369.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261294480|gb|EEX97976.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|261296805|gb|EEY00302.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261303347|gb|EEY06844.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|264660813|gb|EEZ31074.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M292/94/1]
          Length = 482

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 258/478 (53%), Positives = 321/478 (67%), Gaps = 22/478 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGLSPKV+ AV  AGY  PTPIQ   IP  L+R DV GIAQTGTGKTASFVLPMLT
Sbjct: 3   TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQ 240
            FSATM  E+ K++E FL +P RIEV   SSTA+T+      +    + K+  L   +  
Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D++KN IIFCN+KK+V  L  SL +  F   A+HG++DQR+RM +LS+FK+G ++L+V
Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V   D K++ AI
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAI 362

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI--------------------- 399
           E +I +K++W +GDLS+L    E  +  +     +                         
Sbjct: 363 ESMIGEKIEWHDGDLSTLAVSEEADEQPRKGRNARGKGKEKPKEKASKPVAAETVDPAGQ 422

Query: 400 PQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
           PQ       R++   S       K   +  K ++D  ++    +GF  ++PAFML   
Sbjct: 423 PQPVIENQHRREAIRSSNEERRGKPQTEQHKHRRDRDDDGPAPVGFGNDIPAFMLIPT 480


>gi|163868127|ref|YP_001609331.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476]
 gi|161017778|emb|CAK01336.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476]
          Length = 467

 Score =  233 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 247/461 (53%), Positives = 314/461 (68%), Gaps = 3/461 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGLS KV+ AV  AGY  PTPIQ +TIP VLQR DV GIAQTGTGKTASFVLPMLT
Sbjct: 7   SFDDLGLSEKVINAVKSAGYTVPTPIQSETIPHVLQRKDVLGIAQTGTGKTASFVLPMLT 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRE+AAQV +NF+KYG N+ L VALLIGG+ FE Q++KLER
Sbjct: 67  LLEKGRARARMPRTLILEPTREIAAQVEENFDKYGINHRLNVALLIGGVSFEHQDRKLER 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L PFTRQTL
Sbjct: 127 GADVLIATPGRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPFTRQTL 186

Query: 182 LFSATMTDELQKVSENF-LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            FSATM  E+ K+++ F             S+     +    +    + K+  L + +  
Sbjct: 187 FFSATMAPEITKLTKQFLHSPVSVEVTKASSTATTVTQRLVKSGNKSWDKRAVLRELIQN 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               ++N IIFCN+K+++  L  SL K  F+V A+HG++DQ SRM  L++FK   + L+V
Sbjct: 247 EGSKLQNAIIFCNRKRDISELFRSLIKHNFNVGALHGDMDQYSRMNTLADFKNNKLTLLV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFN+DVP  AE+YIHRIGRTGRA R GKAFT+V K D K+I+AI
Sbjct: 307 ASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANRLGKAFTIVTKADQKYINAI 366

Query: 361 EKLIEKKVDWLNGDLSSL--NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           E++  +K++WLNGDLS+L  +   E   + + +        P++     ++    +    
Sbjct: 367 EEMSHEKIEWLNGDLSTLSTDDQTEDSVVKKKSSQSSKKKAPKEPIAHPKKTVKENKIDY 426

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRG 459
              +K  EK S+ Q+  +  +   LGF  ++PAFML K R 
Sbjct: 427 IKNVKGKEKPSEQQRLRKNRNYAPLGFGDDIPAFMLIKTRR 467


>gi|240850330|ref|YP_002971723.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bartonella
           grahamii as4aup]
 gi|240267453|gb|ACS51041.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bartonella
           grahamii as4aup]
          Length = 467

 Score =  233 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 248/459 (54%), Positives = 312/459 (67%), Gaps = 3/459 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGLS KV+ AV  AGY  PTPIQ +TIP VLQR DV GIAQTGTGKTASFVLPMLT
Sbjct: 7   SFDDLGLSAKVINAVKSAGYTTPTPIQSETIPHVLQRKDVLGIAQTGTGKTASFVLPMLT 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRE+AAQV +NF+KYG N+ L VALLIGG+ FE Q++KLER
Sbjct: 67  LLEKGRARARMPRTLILEPTREIAAQVEENFDKYGINHRLNVALLIGGVSFELQDRKLER 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLI TPGR+LDH  RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L PFTRQTL
Sbjct: 127 GADVLIATPGRLLDHCERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPFTRQTL 186

Query: 182 LFSATMTDELQKVSENF-LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            FSATM  E+ K+++ F             S+     +    +    + K+  L + +  
Sbjct: 187 FFSATMAPEITKLTKQFLHSPVSVEVTKASSTATTITQRLVKSGSKSWDKRAVLRELIHN 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               ++N IIFCN+K+++  L  SL +  FSV A+HG++DQ SRM  L++FK+  + L+V
Sbjct: 247 EGAELQNAIIFCNRKRDISELFRSLVRHNFSVGALHGDMDQYSRMSTLADFKDNKLTLLV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFN+DVP  AE+YIHRIGRTGRA R GKAFT+V K D K+I+AI
Sbjct: 307 ASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANRSGKAFTIVTKADQKYINAI 366

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH- 419
           E++  +K++WLNGDLS+L    +  DI     + K++    +       KK+    K+  
Sbjct: 367 EEMSNEKIEWLNGDLSTLIADDQTEDIVVKKKSSKSSKKTAQKEPVAHTKKSVEENKTEY 426

Query: 420 -IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
                  EK S+ Q+  +  +   LGF   +PAFML K 
Sbjct: 427 IKNANNKEKPSEQQRPRKNKNYTPLGFGDEIPAFMLIKT 465


>gi|239831816|ref|ZP_04680145.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301]
 gi|239824083|gb|EEQ95651.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301]
          Length = 484

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 261/480 (54%), Positives = 326/480 (67%), Gaps = 24/480 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGLSPKV+ AV  AGY  PTPIQ   IP  L+R DV GIAQTGTGKTASFVLPMLT
Sbjct: 3   TFAELGLSPKVLAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N  L VALLIGG+ F+ Q +KLER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVEENFAKYGINQRLNVALLIGGVSFDDQERKLER 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 123 GADVLIATPGRLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQ 240
            FSATM  E+ K++E FL +P R+EV   SSTA+T+      +T   + K+  L   +  
Sbjct: 183 FFSATMPPEITKLTEQFLHSPTRVEVAKASSTAKTVTQRLVKSTKKDWDKRAVLRDLIRA 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             DT+KN IIFCN+KK+V  L  SL +  F+  A+HG++DQR+RM +LSNFK+G +QL+V
Sbjct: 243 EGDTLKNAIIFCNRKKDVSELFRSLTRHEFNAGALHGDMDQRARMTMLSNFKDGKLQLLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFNFD+P  +E+Y+HRIGRTGRAGR GKAFT+V   D K++ AI
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDIPIHSEDYVHRIGRTGRAGRSGKAFTIVTPSDTKYLAAI 362

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK--------- 411
           E +I +K++WL+GDLS+L    E  D  +  +AR      +       + K         
Sbjct: 363 EDMIGEKIEWLDGDLSTLPASDEADDPRKGKNARGKGKDAKGKEKPKDKAKAKPAEIVDP 422

Query: 412 --------NYSSQKSHIPLKESEKISKLQQDIQ------ENDADSLGFRGNMPAFMLPKN 457
                     S ++  I     E+  K Q + +      ++    +GF  ++PAFML   
Sbjct: 423 AEQPQPVIETSDRRDAIRASNDERRGKPQHEQKRRRDRDDDGPSPVGFGNDIPAFMLIPT 482


>gi|254500508|ref|ZP_05112659.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
 gi|222436579|gb|EEE43258.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
          Length = 480

 Score =  232 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 250/480 (52%), Positives = 328/480 (68%), Gaps = 17/480 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS KV+ AV  AGY  PT IQ   IP VL+R DV GIAQTGTGKTASF LPML
Sbjct: 1   MSFNTLGLSEKVLAAVDAAGYKDPTAIQAGAIPQVLERRDVLGIAQTGTGKTASFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV +NFE+YG N+ L VALLIGG+ F  Q+KKL+
Sbjct: 61  TLLEKGRARARMPRTLILEPTRELAAQVQENFERYGTNHKLNVALLIGGVSFAEQDKKLD 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQT
Sbjct: 121 RGTDVLIATPGRLLDHFERGKLLLQGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+Q+++E FLQNP RIEV   SSTAE +     A   +   K   L++LL+
Sbjct: 181 LFFSATMPPEIQRLTETFLQNPARIEVAPTSSTAENVTQQLKAAGGKDYDKRVALRELLE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + ++N I+FCN+K+++  L  SLE+  ++V A+HG++DQR+RM +L NF++G I+L+V
Sbjct: 241 GAEDLQNAIVFCNRKRDISTLFRSLERHEYNVGALHGDMDQRTRMMMLENFRKGAIKLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HVFN+DVP  AE+Y+HRIGRTGRAGR G A+TLV + D K++ AI
Sbjct: 301 ASDVAARGLDIPEVSHVFNYDVPINAEDYVHRIGRTGRAGRSGTAYTLVTESDQKYLRAI 360

Query: 361 EKLIEKKVDWLNGDLS-----------SLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           E+L  + ++W+   +              +    K D +  N A ++ P P+K     R+
Sbjct: 361 EELTNQSIEWVGESIDFEAAAAERKAKRRSSKTSKADSSNDNDAAQSKPAPKKRGQSRRK 420

Query: 410 KKNYSSQKSHIPLKESEKISKLQQ------DIQENDADSLGFRGNMPAFMLPKNRGKLND 463
            +  + +      + + ++ K+ Q        Q+N+A +     ++PAF+L   R K   
Sbjct: 421 TEEPAPESPVEETRPTNRVQKISQKPANKPQKQDNNAPAFSEGVHIPAFLLRDPRAKKAS 480


>gi|225627424|ref|ZP_03785461.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo]
 gi|256159665|ref|ZP_05457418.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           ceti M490/95/1]
 gi|256254934|ref|ZP_05460470.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           ceti B1/94]
 gi|260168662|ref|ZP_05755473.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           sp. F5/99]
 gi|261222116|ref|ZP_05936397.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           B1/94]
 gi|261758136|ref|ZP_06001845.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|265998081|ref|ZP_06110638.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M490/95/1]
 gi|225617429|gb|EEH14474.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo]
 gi|260920700|gb|EEX87353.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           B1/94]
 gi|261738120|gb|EEY26116.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|262552549|gb|EEZ08539.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M490/95/1]
          Length = 435

 Score =  232 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 258/457 (56%), Positives = 318/457 (69%), Gaps = 27/457 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGLSPKV+ AV  AGY  PTPIQ   IP  L+R DV GIAQTGTGKTASFVLPMLT
Sbjct: 3   TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQ 240
            FSATM  E+ K++E FL +P RIEV   SSTA+T+      +    + K+  L   +  
Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D++KN IIFCN+KK+V  L  SL +  F   A+HG++DQR+RM +LS+FK+G ++L+V
Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V   D K++ AI
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAI 362

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E +I +K++W +GDLS+L    E  +              Q   G + R K  + Q    
Sbjct: 363 ESMIGEKIEWHDGDLSTLAVSEEADE--------------QPRKGRNARGKPQTEQ---- 404

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
                    K ++D  ++    +GF  ++PAFML   
Sbjct: 405 --------HKHRRDRDDDGPAPVGFGNDIPAFMLIPT 433


>gi|190891965|ref|YP_001978507.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652]
 gi|190697244|gb|ACE91329.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652]
          Length = 527

 Score =  232 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 279/503 (55%), Positives = 351/503 (69%), Gaps = 43/503 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS KV+ AV DAGY  PTPIQ   IP  L+R D+CGIAQTGTGKTASFVLPML+
Sbjct: 25  TFADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLS 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLER
Sbjct: 85  LLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLER 144

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 145 GADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTL 204

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+QK+++ FLQNP+RIEV  P+STA+T+   FVA++++  +K A+L++L+++
Sbjct: 205 FFSATMPPEIQKLADRFLQNPERIEVAKPASTAKTVTQRFVASHSKDYEKRAVLRELVRA 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q  +KN IIFCN+KK+V +L  SLE+ GFSV A+HG++DQRSR  +L NF++G +QL+VA
Sbjct: 265 QTELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTTMLQNFRDGNLQLLVA 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  +E+Y+HRIGRTGRAGR G AFTLV K D K +DAIE
Sbjct: 325 SDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKFVDAIE 384

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS------------------ 403
           KLI +KV+WL+GD++SL P  E  D  +     +      +                   
Sbjct: 385 KLIGEKVEWLSGDVNSLPPAEENADSERPRRNSRERGAKGERGERDRGRGRGNRGAASHK 444

Query: 404 -----TGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDAD----------------- 441
                   D +    +  ++ +   E +   K Q + + N                    
Sbjct: 445 SDNDIQDNDVQVIEAAPARAEVLKNERKAEQKPQNNARHNRPYPANDDSRDRRRHRDHDD 504

Query: 442 ---SLGFRGNMPAFMLPKNRGKL 461
               +GF  ++PAFML     K+
Sbjct: 505 GPTPVGFGDDIPAFMLIAGSAKV 527


>gi|49474271|ref|YP_032313.1| ATP-dependent RNA helicase [Bartonella quintana str. Toulouse]
 gi|49239775|emb|CAF26165.1| ATP-dependent RNA helicase [Bartonella quintana str. Toulouse]
          Length = 467

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 252/460 (54%), Positives = 312/460 (67%), Gaps = 3/460 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGLS KV+ AV  AGY  PTPIQ  TIP VLQR DV GIAQTGTGKTASFVLPMLT
Sbjct: 7   SFDDLGLSEKVIKAVKSAGYTAPTPIQSGTIPYVLQRKDVLGIAQTGTGKTASFVLPMLT 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQV +NF+KYG N+ L VALLIGG+ FE Q++KLER
Sbjct: 67  LLEKGRARARMPRTLILEPTRELAAQVEENFDKYGINHRLNVALLIGGVSFEHQDRKLER 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L PFTRQTL
Sbjct: 127 GADVLIATPGRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPFTRQTL 186

Query: 182 LFSATMTDELQKVSENF-LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            FSATM  E+ K+++ F             S+     +    +    + K+  L + +  
Sbjct: 187 FFSATMAPEITKLTKQFLHFPVTVEVTKASSTATTITQQLVKSGNKSWDKRAVLRELIHN 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +KN IIFCN+K+++  L  SL +  FSV A+HG++DQ SRM  L++FK+  + L+V
Sbjct: 247 EGDELKNAIIFCNRKRDISELFRSLVRHNFSVGALHGDMDQYSRMSTLADFKDNKLTLLV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFN+DVP  AE+YIHRIGRTGRA R GKAFT+V K D K+I AI
Sbjct: 307 ASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANRSGKAFTIVTKADQKYISAI 366

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK-NNPIPQKSTGFDRRKKNYSSQKSH 419
           E++  +K++WLNGDLS+L    +  DI     + K +  I QK      +K     +  +
Sbjct: 367 EEMSNEKIEWLNGDLSTLTTDDQTDDILGKRQSPKLSKKISQKGRAIHTKKPLKDDKVGY 426

Query: 420 IPLKESEKISKLQQDIQENDAD-SLGFRGNMPAFMLPKNR 458
           I    +      Q   ++N +    GF  ++PAFML K R
Sbjct: 427 IKTTNNNANPPEQHHHRKNKSYIPPGFGDDIPAFMLIKMR 466


>gi|209549507|ref|YP_002281424.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535263|gb|ACI55198.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 505

 Score =  231 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 278/503 (55%), Positives = 351/503 (69%), Gaps = 43/503 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS KV+ AV DAGY  PTPIQ   IP  L+R D+CGIAQTGTGKTASFVLPML+
Sbjct: 3   TFADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLS 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLER 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I  ++PFTRQTL
Sbjct: 123 GADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+QK+++ FLQNP+RIEV  P+S A+T+   FVA++++  +K A+L++L+++
Sbjct: 183 FFSATMPPEIQKLADRFLQNPERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLRELVRA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q  +KN IIFCN+KK+V +L  SLE+ GFSV A+HG++DQRSR   L +F++G +QL+VA
Sbjct: 243 QTELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTLQSFRDGNLQLLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  +E+Y+HRIGRTGRAGR G +FTLV K D K +DAIE
Sbjct: 303 SDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGASFTLVTKRDSKFVDAIE 362

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK------------------NNPIPQKS 403
           KLI +KV+WL+GD++SL P  E  D  +     +                  N   P   
Sbjct: 363 KLIGEKVEWLSGDVNSLPPAEESADSERPRRNSRERGAKGERGERDRGRGRGNRSAPGHK 422

Query: 404 TGFDRRKK-----NYSSQKSHIPLKESEKISKLQQDIQENDAD----------------- 441
           +  D +         +  K+ I   E +   K Q + + +                    
Sbjct: 423 SDNDIQDNDVQVIQAAPVKADIVKNERKAEQKPQNNARNSRPYPANDDSRDRRRHRDHDD 482

Query: 442 ---SLGFRGNMPAFMLPKNRGKL 461
               +GF  ++PAFML     K+
Sbjct: 483 GPTPVGFGDDIPAFMLIAGSAKV 505


>gi|153009579|ref|YP_001370794.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561467|gb|ABS14965.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 498

 Score =  231 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 261/480 (54%), Positives = 327/480 (68%), Gaps = 24/480 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGLSPKV+ AV  AGY  PTPIQ   IP  L+R DV GIAQTGTGKTASFVLPMLT
Sbjct: 17  TFAELGLSPKVLAAVEAAGYSAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 76

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ F+ Q +KLER
Sbjct: 77  LLEKGRARARMPRTLILEPTRELAAQVEENFTKYGVNHRLNVALLIGGVSFDEQERKLER 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 137 GADVLIATPGRLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQ 240
            FSATM  E+ K++E FL +P R+EV   SSTA+T+      ++   + K+  L   +  
Sbjct: 197 FFSATMPPEITKLTEQFLHSPTRVEVAKASSTAKTVTQRLVKSSKKDWDKRAVLRDLVRA 256

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             DT+KN IIFCN+KK+V  L  SL +  F+  A+HG++DQR+RM +L+NFKEG +QL+V
Sbjct: 257 EGDTLKNAIIFCNRKKDVSELFRSLTRHEFNAGALHGDMDQRARMTMLANFKEGKLQLLV 316

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFNFDVP  +E+Y+HRIGRTGRAGR GKAFT+V   D K++ AI
Sbjct: 317 ASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGKAFTIVTPSDTKYLAAI 376

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK--------- 411
           E +I +K++WL+GDLS+L    E  D  +  +AR      +       + K         
Sbjct: 377 ENMIGEKIEWLDGDLSTLPASDEADDPRKSKNARGKGKDAKGKDKPKDKAKAKPAEVLDP 436

Query: 412 --------NYSSQKSHIPLKESEKISKLQQDIQ------ENDADSLGFRGNMPAFMLPKN 457
                     S ++  I     E+  K Q + +      ++    +GF  ++PAFML   
Sbjct: 437 AEQPQPVIEASERRDAIRASNDERRGKPQHEQKRRRDRDDDGPTPVGFGNDIPAFMLIPT 496


>gi|110634124|ref|YP_674332.1| DEAD/DEAH box helicase-like [Mesorhizobium sp. BNC1]
 gi|110285108|gb|ABG63167.1| DEAD/DEAH box helicase-like protein [Chelativorans sp. BNC1]
          Length = 477

 Score =  231 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 258/480 (53%), Positives = 323/480 (67%), Gaps = 22/480 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGLSPKV+ AV DAGY  PTPIQ   IP  LQ  DV GIAQTGTGKTASFVLPML
Sbjct: 1   MTFSDLGLSPKVLAAVGDAGYTVPTPIQAGAIPHALQGKDVLGIAQTGTGKTASFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T LE+GRAR RMPRTLILEPTRELAAQV +NF KYGKN+ L +ALLIGG+ F+ Q KKLE
Sbjct: 61  TRLERGRARARMPRTLILEPTRELAAQVEENFVKYGKNHRLNIALLIGGVSFDEQEKKLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGADVLI TPGR+LDH  RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQT
Sbjct: 121 RGADVLIATPGRLLDHHERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTP-SSTAETIEHCFVATYAQYSKKCALLQQLL 239
           L FSATM  E+ K++E FLQ P R+EV+ P S+     +    +    ++K+  L   + 
Sbjct: 181 LFFSATMPPEITKLTEQFLQGPVRVEVSKPASTAVNITQRLVKSGSKPWAKREKLRDLIR 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D +KN IIFCN+K  V  L  SL +  F   A+HG++DQR+RM +L NF++G ++L+
Sbjct: 241 AEGDELKNAIIFCNRKTEVATLFRSLVRHEFDAGALHGDMDQRARMMMLENFRKGKLKLL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLDIPDV HVFNFDVP  +E+Y+HRIGRTGRAGR GKAFT+V + D K++D 
Sbjct: 301 VASDVAARGLDIPDVSHVFNFDVPTHSEDYVHRIGRTGRAGRSGKAFTIVTRADRKYVDG 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ--- 416
           IEKLI + ++WL+GDLS+L    E  D       R      ++  G  RR +    +   
Sbjct: 361 IEKLIGQDIEWLDGDLSTLTVEDEA-DEKPRRGGRAERGGKKRDQGKSRRAEEPVEEAVS 419

Query: 417 KSHIPLKESEKISKLQQDIQEND---------------ADSLGFRGNMPAFMLPKNRGKL 461
            S  P    E   + ++D+  +                 ++LGF  ++P FM  K  GK+
Sbjct: 420 PSEKPAPRREDRRRERKDMIRSTNEEQRGRRRERPERETETLGFGDDIPDFM--KVPGKV 477


>gi|260460697|ref|ZP_05808947.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259033274|gb|EEW34535.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 525

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 246/449 (54%), Positives = 311/449 (69%), Gaps = 7/449 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGLSPKV+ AV DAGY +PTPIQ   IP  L   DV GIAQTGTGKTASFVLPML
Sbjct: 1   MTFSDLGLSPKVLSAVTDAGYTQPTPIQAGAIPHALLGKDVLGIAQTGTGKTASFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T LEKGRAR RMPRTLILEPTRELAAQV +NF KYGKN+ L +ALLIGG+ F+ Q+KKLE
Sbjct: 61  TRLEKGRARARMPRTLILEPTRELAAQVEENFIKYGKNHKLNIALLIGGVSFDEQDKKLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGADVLI TPGR+LDH  RGKLL+N +EILVIDEADRMLDMGFIP I+ I  ++PFTRQT
Sbjct: 121 RGADVLIATPGRLLDHRERGKLLLNGVEILVIDEADRMLDMGFIPDIERICEMIPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           L FSATM  E+ K++E FL  P R+EV+   S+    I+    +    + K+  L   + 
Sbjct: 181 LFFSATMPPEITKLTEKFLHAPVRVEVSKAASAATNIIQRLVKSGSKPWDKRETLRNLIK 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +KN IIFCN+K  V  L  SL K  F   A+HG++DQR+RM++L+NF++G ++ +
Sbjct: 241 AEDAELKNAIIFCNRKVEVSELFRSLLKYDFDAGALHGDMDQRARMQMLANFRDGKLRYL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLDIPDV HVFN+DVP  AE+Y+HRIGRTGRAGR GK+FT+  K D K+IDA
Sbjct: 301 VASDVAARGLDIPDVSHVFNYDVPIHAEDYVHRIGRTGRAGRSGKSFTIATKSDTKYIDA 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDI------AQHNHARKNNPIPQKSTGFDRRKKNY 413
           IE+LI  K++W +GDLS++     + D       A     RK++    +    D  ++  
Sbjct: 361 IERLIGTKIEWHDGDLSTVVASEGEDDAPRRGKGAPRRAGRKDDDRKDRGERKDGGERKK 420

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADS 442
             ++     +E       QQ  Q + A++
Sbjct: 421 GGERRARHSEEDAPAVVAQQHEQSDAAET 449



 Score = 38.2 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 380 PPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQEND 439
           P  + ++      A ++    +KS+  + R       +   P +        Q+  ++ND
Sbjct: 450 PVADVVERRARKDAIRSENTERKSSDRNERAPERGDTR---PQRGDNNRPGRQRHQEDND 506

Query: 440 ADSLGFRGNMPAFMLP 455
           A ++GF  +MPAFM  
Sbjct: 507 A-TVGFGDDMPAFMRI 521


>gi|227822081|ref|YP_002826052.1| ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
 gi|227341081|gb|ACP25299.1| ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
          Length = 501

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 278/495 (56%), Positives = 342/495 (69%), Gaps = 41/495 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FADLGLS KV+ AV DAGY  PTPIQ   IP  LQR D+ GIAQTGTGKTASFVLPMLT
Sbjct: 3   NFADLGLSQKVLSAVTDAGYATPTPIQAGAIPPALQRRDILGIAQTGTGKTASFVLPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQVA+NF+KYGKN+ L +ALLIGG+ F+ Q++KLER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLER 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLICTPGR+LDHF RGKLLM  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 123 GADVLICTPGRLLDHFERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+QK+++ FLQNP+R+EV  P+STA T+   FVA + +  +K A+L+ L+++
Sbjct: 183 FFSATMPPEIQKLADRFLQNPERVEVARPASTANTVTQRFVAAHGKDYEKRAVLRDLIRA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q  +KN IIFCN+KK+V  L  SL++ GFSV A+HG++DQRSRM +L+NFK+G IQL+VA
Sbjct: 243 QGELKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDGNIQLLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR G +FT+V K D K  DAIE
Sbjct: 303 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGASFTIVTKRDTKFSDAIE 362

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI- 420
           KLI + V+WLNGDLS L  P+E  D  +           +      R + ++ S  + I 
Sbjct: 363 KLIGQTVEWLNGDLSQLPEPMESHDGRRERGRDGRKDRKKDVERSGRARGDHKSDAARID 422

Query: 421 ------PLKESEKISKLQQDIQEN----------------------------------DA 440
                 P+ E  +  K ++                                         
Sbjct: 423 NVTEFEPVAERAEAVKPERSADHKQGHASRNDRLGRAQNAANDDNRDRRHRNRRDHDDGP 482

Query: 441 DSLGFRGNMPAFMLP 455
             +GF   +PAFML 
Sbjct: 483 TPVGFGDEIPAFMLI 497


>gi|240140800|ref|YP_002965280.1| RNA helicase [Methylobacterium extorquens AM1]
 gi|240010777|gb|ACS42003.1| RNA helicase [Methylobacterium extorquens AM1]
          Length = 519

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 246/451 (54%), Positives = 323/451 (71%), Gaps = 5/451 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS KV+ AV  AGY +PTPIQ + IP VL R DV GIAQTGTGKTA+F LPML
Sbjct: 1   MSFADLGLSDKVLQAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LE GRAR RMPRTLILEPTRELAAQV +NFE+YG N+ L VAL+IGG+ F  Q+ KL 
Sbjct: 61  TMLETGRARARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDHF RGKLL+  +E+LVIDEADRMLDMGFIP I+ I  +VPFTRQT
Sbjct: 121 RGTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++++++ FL NP+R+EV  P+STA TIE   VAT A+  +K  +L+ L++
Sbjct: 181 LFFSATMPPEIERLADMFLHNPQRVEVARPASTATTIEQRLVATGAEGHEKRKVLRHLIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S   ++NGIIFCN+K++V  L  SL   GF+  A+HG++DQR+RM  L  F+ G + L+V
Sbjct: 241 SASELQNGIIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFNFDVP+  E+Y+HRIGRTGRAGR G+AFTL ++ D + + AI
Sbjct: 301 ASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFTLASRSDERSLSAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI + + WL+GDL+S++   ++++  +    R +    +   G + +    S+++S  
Sbjct: 361 ESLIGQPIAWLDGDLASVS---DEVEGDEPRRRRGSRRAKETKGGEETKSGGRSTERSAA 417

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPA 451
           P  ES +     +  +   A+    R + P 
Sbjct: 418 PASESPRSENRSRGGRRPAAER--SRADAPR 446


>gi|163853383|ref|YP_001641426.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163664988|gb|ABY32355.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           PA1]
          Length = 519

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 246/451 (54%), Positives = 323/451 (71%), Gaps = 5/451 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS KV+ AV  AGY +PTPIQ + IP VL R DV GIAQTGTGKTA+F LPML
Sbjct: 1   MSFADLGLSDKVLQAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LE GRAR RMPRTLILEPTRELAAQV +NFE+YG N+ L VAL+IGG+ F  Q+ KL 
Sbjct: 61  TMLETGRARARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDHF RGKLL+  +E+LVIDEADRMLDMGFIP I+ I  +VPFTRQT
Sbjct: 121 RGTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++++++ FL NP+R+EV  P+STA TIE   VAT A+  +K  +L+ L++
Sbjct: 181 LFFSATMPPEIERLADMFLHNPQRVEVARPASTATTIEQRLVATGAEGHEKRKVLRHLIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S   ++NGIIFCN+K++V  L  SL   GF+  A+HG++DQR+RM  L  F+ G + L+V
Sbjct: 241 SASELQNGIIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFNFDVP+  E+Y+HRIGRTGRAGR G+AFTL ++ D + + AI
Sbjct: 301 ASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFTLASRSDERSLSAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI + + WL+GDL+S++   ++++  +    R +    +   G + +    S+++S  
Sbjct: 361 ESLIGQPIAWLDGDLASVS---DEVEGDEPRRRRGSRRAKETKGGEETKSGGRSTERSAA 417

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPA 451
           P  ES +     +  +   A+    R + P 
Sbjct: 418 PASESPRSENRSRGGRRPAAER--SRADAPR 446


>gi|218532241|ref|YP_002423057.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4]
 gi|218524544|gb|ACK85129.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 519

 Score =  230 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 246/451 (54%), Positives = 323/451 (71%), Gaps = 5/451 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS KV+ AV  AGY +PTPIQ + IP VL R DV GIAQTGTGKTA+F LPML
Sbjct: 1   MSFADLGLSDKVLQAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LE GRAR RMPRTLILEPTRELAAQV +NFE+YG N+ L VAL+IGG+ F  Q+ KL 
Sbjct: 61  TMLETGRARARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDHF RGKLL+  +E+LVIDEADRMLDMGFIP I+ I  +VPFTRQT
Sbjct: 121 RGTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++++++ FL NP+R+EV  P+STA TIE   VAT A+  +K  +L+ L++
Sbjct: 181 LFFSATMPPEIERLADMFLHNPQRVEVARPASTATTIEQRLVATGAEGHEKRKVLRHLIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S   ++NGIIFCN+K++V  L  SL   GF+  A+HG++DQR+RM  L  F+ G + L+V
Sbjct: 241 SASELQNGIIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFNFDVP+  E+Y+HRIGRTGRAGR G+AFTL ++ D + + AI
Sbjct: 301 ASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFTLASRSDERSLSAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI + + WL+GDL+S++   ++++  +    R +    +   G + +    S+++S  
Sbjct: 361 ESLIGQPIAWLDGDLASVS---DEVEGDEPRRRRGSRRAKETKGGEEAKSGGRSTERSAA 417

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPA 451
           P  ES +     +  +   A+    R + P 
Sbjct: 418 PSSESPRSENRSRGGRRPAAER--SRADAPR 446


>gi|49475435|ref|YP_033476.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
 gi|49238241|emb|CAF27451.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
          Length = 467

 Score =  230 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 252/464 (54%), Positives = 316/464 (68%), Gaps = 11/464 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DLGLS KV+ AV   GY  PTPIQ  TIP VLQR DV GIAQTGTGKTASFVLPMLT
Sbjct: 7   NFDDLGLSAKVIKAVKSVGYTVPTPIQSGTIPHVLQRRDVLGIAQTGTGKTASFVLPMLT 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQV +NF+KYG N+ L VALLIGG+ FE Q++KLER
Sbjct: 67  LLEKGRARARMPRTLILEPTRELAAQVEENFDKYGINHRLNVALLIGGVSFEQQDRKLER 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L PFTRQTL
Sbjct: 127 GVDVLIATPGRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPEIERICKLTPFTRQTL 186

Query: 182 LFSATMTDELQKVSENF-LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            FSATM  E+ K+++ F             S+ +   +    +    + K+  L + +  
Sbjct: 187 FFSATMAPEITKLTKQFLHSPVTVEVTKASSTASTITQRLVKSGNKAWDKRAVLRELIHN 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +KN IIFCN+K+++  L  SL +  FSV A+HG++DQ SRM  L++FK+  I L+V
Sbjct: 247 EGDKLKNAIIFCNRKRDISELLRSLIRHNFSVGALHGDMDQYSRMSTLADFKDNKITLLV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFN+DVP  AE+YIHRIGRTGRA R GKAFT+V K D K+I+AI
Sbjct: 307 ASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANRSGKAFTIVTKTDQKYINAI 366

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR----KKNYSSQ 416
           E++  +K++WL GDLS+L    +K DI      ++ +P   K T    R    +K+    
Sbjct: 367 EEISNEKIEWLTGDLSTLTTTDQKDDI----ILKRKSPTSSKKTAQKERSVHTQKSLKDD 422

Query: 417 KSHIPLKESEKISKLQQ--DIQENDADSLGFRGNMPAFMLPKNR 458
           K       + K++ LQ+    +  +    GF  ++PAFML K R
Sbjct: 423 KVGYMKATNNKVNLLQKCHSRKNKNHTPSGFGDDIPAFMLIKIR 466


>gi|254563310|ref|YP_003070405.1| RNA helicase [Methylobacterium extorquens DM4]
 gi|254270588|emb|CAX26591.1| RNA helicase [Methylobacterium extorquens DM4]
          Length = 517

 Score =  230 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 246/451 (54%), Positives = 323/451 (71%), Gaps = 5/451 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS KV+ AV  AGY +PTPIQ + IP VL R DV GIAQTGTGKTA+F LPML
Sbjct: 1   MSFADLGLSDKVLQAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LE GRAR RMPRTLILEPTRELAAQV +NFE+YG N+ L VAL+IGG+ F  Q+ KL 
Sbjct: 61  TMLETGRARARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDHF RGKLL+  +E+LVIDEADRMLDMGFIP I+ I  +VPFTRQT
Sbjct: 121 RGTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++++++ FL NP+R+EV  P+STA TIE   VAT A+  +K  +L+ L++
Sbjct: 181 LFFSATMPPEIERLADMFLHNPQRVEVARPASTATTIEQRLVATGAEGHEKRKVLRHLIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S   ++NGIIFCN+K++V  L  SL   GF+  A+HG++DQR+RM  L  F+ G + L+V
Sbjct: 241 SASELQNGIIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFNFDVP+  E+Y+HRIGRTGRAGR G+AFTL ++ D + + AI
Sbjct: 301 ASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFTLASRSDERSLSAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI + + WL+GDL+S++   ++++  +    R +    +   G + +    S+++S  
Sbjct: 361 ESLIGQPIAWLDGDLASVS---DEVEGDEPRRRRGSRRAKEAKGGEETKSGGRSTERSAA 417

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPA 451
           P  ES +     +  +   A+    R + P 
Sbjct: 418 PSSESPRSENRSRGGRRPAAER--SRADAPR 446


>gi|306843833|ref|ZP_07476431.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1]
 gi|306275911|gb|EFM57627.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1]
          Length = 482

 Score =  230 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 262/478 (54%), Positives = 322/478 (67%), Gaps = 22/478 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGLSPKV+ AV  AGY  PTPIQ   IP  L+R DV GIAQTGTGKTASFVLPMLT
Sbjct: 3   TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQ 240
            FSATM  E+ K++E FL +P RIEV   SSTA+T+      +    + K+  L   +  
Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             DT+KN IIFCN+KK+V  L  SL +  F   A+HG++DQR+RM +LS+FK+G ++L+V
Sbjct: 243 EGDTLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V   D K++ AI
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAI 362

Query: 361 EKLIEKKVDWLNGDLSSL---------------------NPPLEKIDIAQHNHARKNNPI 399
           E +I +K++W +GDLS+L                     + P EK        A      
Sbjct: 363 ESMIGEKIEWHDGDLSTLAVSEEADEQPRKGRNARGKGKDKPKEKASKPVAAEAVDPAGQ 422

Query: 400 PQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
           PQ       R++   S       K   +  K ++D  ++    +GF  ++PAFML   
Sbjct: 423 PQPVIENQHRREAIRSANEERRGKPQTEQHKRRRDRDDDGPAPVGFGNDIPAFMLIPT 480


>gi|182677108|ref|YP_001831254.1| DEAD/DEAH box helicase domain-containing protein [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182632991|gb|ACB93765.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 484

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 246/474 (51%), Positives = 314/474 (66%), Gaps = 19/474 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS KV+ AV   GY  PTPIQ + IP  L   D+ GIAQTGTGKTA+F LPML
Sbjct: 1   MTFNELGLSEKVLQAVAATGYTSPTPIQAEAIPHALAGRDILGIAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + LE+GRAR RMPRTLILEPTRELAAQV ++F +YG N+ L VALLIGG+ F  Q  K+ 
Sbjct: 61  SRLEQGRARARMPRTLILEPTRELAAQVEESFARYGINHKLNVALLIGGVSFAEQENKIM 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGADVLI TPGR+LD   RGKLL+  IEILVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGADVLIATPGRLLDFSERGKLLLTGIEILVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+ +++E FL NP RIEV   SSTA TI    VA+    +K+   L+QL++
Sbjct: 181 LFFSATMPPEITRLTETFLHNPVRIEVARASSTATTITQGLVASAHGPAKRE-TLRQLIR 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +KN IIFCN+K++V  L  SL+K GFS  A+HG++DQR+RM  L  FK G + L+V
Sbjct: 240 GAENLKNAIIFCNRKRDVAVLHKSLQKHGFSAGALHGDMDQRARMTSLDAFKSGDVNLLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR G A ++V   D K++D I
Sbjct: 300 CSDVAARGLDIPDVSHVFNFDVPTHAEDYVHRIGRTGRAGRSGVALSIVTSADRKYVDEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK-------NNPIPQKSTGFDRRKKNY 413
           EKLI +K+DW  G  ++L+    +  +A     R+         P PQ+       +   
Sbjct: 360 EKLIARKIDWQGG--ATLDDVAAEESVAHATETRRGRGGKIAKRPAPQEEA--RPSQAAA 415

Query: 414 SSQKSHIPLKESE-------KISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
              KS  P++E            + ++  +++D   +G   ++P F+L   + K
Sbjct: 416 RGPKSRRPVEEGRSDGRKPSNPPRSRRSYEDDDVPVVGLGDHVPMFLLRPVKLK 469


>gi|62289879|ref|YP_221672.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 1 str.
           9-941]
 gi|82699806|ref|YP_414380.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308]
 gi|189024121|ref|YP_001934889.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|237815373|ref|ZP_04594371.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A]
 gi|254697319|ref|ZP_05159147.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254730216|ref|ZP_05188794.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 4 str. 292]
 gi|260545377|ref|ZP_05821118.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260757905|ref|ZP_05870253.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260761727|ref|ZP_05874070.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|62196011|gb|AAX74311.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615907|emb|CAJ10911.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Brucella melitensis biovar Abortus 2308]
 gi|189019693|gb|ACD72415.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|237790210|gb|EEP64420.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A]
 gi|260096784|gb|EEW80659.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260668223|gb|EEX55163.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260672159|gb|EEX58980.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
          Length = 482

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 259/478 (54%), Positives = 325/478 (67%), Gaps = 22/478 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGLSPKV+ AV  AGY  PTPIQ   IP  L+R DV GIAQTGTGKTASFVLPMLT
Sbjct: 3   TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQ 240
            FSATM  E+ K++E FL +P RIEV   SSTA+T+      +    + K+  L   +  
Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D++KN IIFCN+KK+V  L  SL +  F   A+HG++DQR+RM +LS+FK+G ++L+V
Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V   D K++ AI
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAI 362

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK-----------NNPIPQKSTG---- 405
           E +I +K++W +GDLS+L    E  +  +     +           +NP+  K+      
Sbjct: 363 ESMIGEKIEWHDGDLSTLAVSEEADEQPRKGRNARGKGKEKPKEKASNPVAAKTVDPAGQ 422

Query: 406 ------FDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
                    R++   S       K   +  K ++D  ++    +GF  ++PAFML   
Sbjct: 423 PQPVIENQHRREAIRSSNEERRGKPQTEQHKRRRDRDDDGPAPVGFGNDIPAFMLIPT 480


>gi|319783267|ref|YP_004142743.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169155|gb|ADV12693.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 520

 Score =  228 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 250/516 (48%), Positives = 323/516 (62%), Gaps = 61/516 (11%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLSPKV+ AV DAGY +PTPIQ   IP  L   D+ GIAQTGTGKTASFVLPML
Sbjct: 1   MTFADLGLSPKVLSAVTDAGYTQPTPIQAGAIPHALLGKDILGIAQTGTGKTASFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T LE GRAR RMPRTLILEPTRELAAQV +NF +YGKN+ L +ALLIGG+ F+ QNKKLE
Sbjct: 61  TRLENGRARARMPRTLILEPTRELAAQVEENFIRYGKNHKLNIALLIGGVSFDEQNKKLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RGKLL+N +EILVIDEADRMLDMGFIP I+ I  ++PFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHRERGKLLLNGVEILVIDEADRMLDMGFIPDIERICEMIPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           L FSATM  E+ K++E FL  P R+EV+   S+     +    +    + K+  L   + 
Sbjct: 181 LFFSATMPPEITKLTEKFLHAPVRVEVSKAASAATNITQRLVKSGSKPWDKRETLRNLIK 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +KN IIFCN+K  V  L  SL K  F   A+HG++DQR+RM++L+NF++G ++ +
Sbjct: 241 AEDAELKNAIIFCNRKIEVSELFRSLLKYDFDAGALHGDMDQRARMQMLANFRDGKLRYL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLDIPDV HVFN+DVP  AE+Y+HRIGRTGRAGR GK+FT+  K D K+IDA
Sbjct: 301 VASDVAARGLDIPDVSHVFNYDVPIHAEDYVHRIGRTGRAGRSGKSFTIATKSDTKYIDA 360

Query: 360 IEKLIEKKVDWLNGDLSSL-------NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           IE+LI  K++W +GDLS++       +    +   A     RK++   ++  G  + ++ 
Sbjct: 361 IERLIGNKIEWHDGDLSTVVASEGGEDDAPRRGKGAPRRAGRKDDDRSREKGGERKPRER 420

Query: 413 YSS----------------------------QKSHIPLKESEKISK-------------- 430
           ++                             ++S      SE   +              
Sbjct: 421 HAKRSEDTAPETVREDQPVAEVAAAAADVGERRSRKEAIRSENTERKSSDRNEQRAPERG 480

Query: 431 -----------LQQDIQENDADSLGFRGNMPAFMLP 455
                       +Q  QE++  ++GF  +MPAFM  
Sbjct: 481 DTRPQRDNSRPARQRHQEDNDSTVGFGDDMPAFMRI 516


>gi|17987318|ref|NP_539952.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 1 str.
           16M]
 gi|225852449|ref|YP_002732682.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis ATCC 23457]
 gi|254689182|ref|ZP_05152436.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 6 str. 870]
 gi|256044606|ref|ZP_05447510.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256113486|ref|ZP_05454320.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|256257432|ref|ZP_05462968.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 9 str. C68]
 gi|256264057|ref|ZP_05466589.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|260563958|ref|ZP_05834444.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|260754681|ref|ZP_05867029.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260883707|ref|ZP_05895321.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|265991030|ref|ZP_06103587.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265994867|ref|ZP_06107424.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|297248281|ref|ZP_06931999.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196]
 gi|17982999|gb|AAL52216.1| ATP-dependent RNA helicase dead [Brucella melitensis bv. 1 str.
           16M]
 gi|225640814|gb|ACO00728.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis ATCC 23457]
 gi|260153974|gb|EEW89066.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|260674789|gb|EEX61610.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260873235|gb|EEX80304.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|262765980|gb|EEZ11769.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|263001814|gb|EEZ14389.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263094252|gb|EEZ18122.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|297175450|gb|EFH34797.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196]
 gi|326408963|gb|ADZ66028.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis M28]
 gi|326538677|gb|ADZ86892.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis M5-90]
          Length = 482

 Score =  228 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 260/478 (54%), Positives = 324/478 (67%), Gaps = 22/478 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGLSPKV+ AV  AGY  PTPIQ   IP  L+R DV GIAQTGTGKTASFVLPMLT
Sbjct: 3   TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQ 240
            FSATM  E+ K++E FL +P RIEV   SSTA+T+      +    + K+  L   +  
Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D++KN IIFCN+KK+V  L  SL +  F   A+HG++DQR+RM +LS+FK+G ++L+V
Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V   D K++ AI
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAI 362

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH-------------------ARKNNPI-- 399
           E +I +K++W +GDLS+L    E  +  +                      A+  +P   
Sbjct: 363 ESMIGEKIEWHDGDLSTLAVSEEADEQPRKGRNARGKGKEKPKEKASKPVAAKTVDPAGQ 422

Query: 400 PQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
           PQ       R++   S       K   +  K ++D  ++    +GF  ++PAFML   
Sbjct: 423 PQPVIENQHRREAIRSSNEERRGKPQTEQHKRRRDRDDDGPAPVGFGNDIPAFMLIPT 480


>gi|163843207|ref|YP_001627611.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445]
 gi|163673930|gb|ABY38041.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445]
          Length = 482

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 261/478 (54%), Positives = 323/478 (67%), Gaps = 22/478 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGLSPKV+ AV  AGY  PTPIQ   IP  L+R DV GIAQTGTGKTASFVLPMLT
Sbjct: 3   TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQ 240
            FSATM  E+ K++E FL +P RIEV   SSTA+T+      +    + K+  L   +  
Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D++KN IIFCN+KK+V  L  SL +  F   A+HG++DQR+RM +LS+FK+G ++L+V
Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V   D K++ AI
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAI 362

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH-------------ARKNNPI-------- 399
           E +I +K++W +GDLS+L    E  +  +                ARK            
Sbjct: 363 ESMIGEKIEWHDGDLSTLAVSEEADEQPRKGRNARGKGKEKPKEKARKPVAAETVDPAGQ 422

Query: 400 PQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
           PQ       R++   S       K   +  K ++D  ++    +GF  ++PAFML   
Sbjct: 423 PQPVIENQHRREAIRSSNEERRGKPQTEQHKRRRDRDDDGPAPVGFGNDIPAFMLIPT 480


>gi|218462794|ref|ZP_03502885.1| ATP dependent RNA helicase protein [Rhizobium etli Kim 5]
          Length = 398

 Score =  227 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 264/396 (66%), Positives = 324/396 (81%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS KV+ AV DAGY  PTPIQ   IP  L+R D+CGIAQTGTGKTASFVLPML+
Sbjct: 3   TFADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLS 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLER 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 123 GADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+QK+++ FLQNP+RIEV  P+S A+T+   FVA++++  +K A+L++L+++
Sbjct: 183 FFSATMPPEIQKLADRFLQNPERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLRELVRA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q  +KN IIFCN+KK+V +L  SLE+ GFSV A+HG++DQRSR  +L +F++G +QL+VA
Sbjct: 243 QTELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMMLQSFRDGNLQLLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  +E+Y+HRIGRTGRAGR G AFTLV K D K +DAIE
Sbjct: 303 SDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKFVDAIE 362

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           KLI +K++WLNGDL++L P  E  D  +     +  
Sbjct: 363 KLIGEKIEWLNGDLNALPPAEEGKDSERPRRNGRER 398


>gi|306840451|ref|ZP_07473211.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
 gi|306289585|gb|EFM60800.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
          Length = 482

 Score =  227 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 259/478 (54%), Positives = 321/478 (67%), Gaps = 22/478 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGLSPKV+ AV  AGY  PTPIQ   IP  L+R DV GIAQTGTGKTASFVLPMLT
Sbjct: 3   TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQ 240
            FSATM  E+ K++E FL +P RIEV   SSTA+T+      +    + K+  L   +  
Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             DT+KN IIFCN+KK+V  L  SL +  F   A+HG++DQR+RM +LS+FK+G ++L+V
Sbjct: 243 EGDTLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V   D K++ AI
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAI 362

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI--------------------- 399
           E +I +K++W +GDLS+L    E  +  +     +                         
Sbjct: 363 ESMIGEKIEWHDGDLSTLAVSEEADEQPRKGRNARGKGKEKPKEKASKPVAAEAVDPAGQ 422

Query: 400 PQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
           PQ       R++   S       K   +  K ++D  ++    +GF  ++PAFML   
Sbjct: 423 PQPVIENQHRREAIRSSNEERRGKPQTEQHKRRRDRDDDGPAPVGFGNDIPAFMLIPT 480


>gi|254719036|ref|ZP_05180847.1| ATP-dependent RNA helicase DDX17 [Brucella sp. 83/13]
 gi|265984026|ref|ZP_06096761.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
 gi|264662618|gb|EEZ32879.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
          Length = 482

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 258/478 (53%), Positives = 321/478 (67%), Gaps = 22/478 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGLSPKV+ AV  AGY  PTPIQ   IP  L+R DV GIAQTGTGKTASFVLPMLT
Sbjct: 3   TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQ 240
            FSATM  E+ K++E FL +P RIEV   SSTA+T+      +    + K+  L   +  
Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D++KN IIFCN+KK+V  L  SL +  F   A+HG++DQR+RM +LS+FK+G ++L+V
Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V   D K++ AI
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAI 362

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI--------------------- 399
           E +I +K++W +GDLS+L    E  +  +     +                         
Sbjct: 363 ESMIGEKIEWHDGDLSTLAVSEEADEQPRKGRNARGKGKDKPKKKASKPVAAETVDPAGQ 422

Query: 400 PQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
           PQ       R++   S       K   +  K ++D  ++    +GF  ++PAFML   
Sbjct: 423 PQPVIENQHRREAIRSSNEERRGKPQTEQHKRRRDRDDDGPAPVGFGNDIPAFMLIPT 480


>gi|23501822|ref|NP_697949.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
 gi|161618894|ref|YP_001592781.1| ATP-dependent RNA helicase DDX17 [Brucella canis ATCC 23365]
 gi|254701699|ref|ZP_05163527.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           suis bv. 5 str. 513]
 gi|254704242|ref|ZP_05166070.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           suis bv. 3 str. 686]
 gi|256061039|ref|ZP_05451195.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           neotomae 5K33]
 gi|256369364|ref|YP_003106872.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
 gi|260566511|ref|ZP_05836981.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
 gi|261325038|ref|ZP_05964235.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261752249|ref|ZP_05995958.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261754908|ref|ZP_05998617.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|294852292|ref|ZP_06792965.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026]
 gi|23347756|gb|AAN29864.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis
           1330]
 gi|161335705|gb|ABX62010.1| Probable ATP-dependent RNA helicase DDX17 [Brucella canis ATCC
           23365]
 gi|255999524|gb|ACU47923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
 gi|260156029|gb|EEW91109.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
 gi|261301018|gb|EEY04515.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261742002|gb|EEY29928.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261744661|gb|EEY32587.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|294820881|gb|EFG37880.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026]
          Length = 482

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 258/478 (53%), Positives = 321/478 (67%), Gaps = 22/478 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGLSPKV+ AV  AGY  PTPIQ   IP  L+R DV GIAQTGTGKTASFVLPMLT
Sbjct: 3   TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQ 240
            FSATM  E+ K++E FL +P RIEV   SSTA+T+      +    + K+  L   +  
Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D++KN IIFCN+KK+V  L  SL +  F   A+HG++DQR+RM +LS+FK+G ++L+V
Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V   D K++ AI
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAI 362

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI--------------------- 399
           E +I +K++W +GDLS+L    E  +  +     +                         
Sbjct: 363 ESMIGEKIEWHDGDLSTLAVSEEADEQPRKGRNARGKGKEKPKEKASKPVAAETVDPAGQ 422

Query: 400 PQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
           PQ       R++   S       K   +  K ++D  ++    +GF  ++PAFML   
Sbjct: 423 PQPVIENQHRREAIRSSNEERRGKPQTEQHKRRRDRDDDGPAPVGFGNDIPAFMLIPT 480


>gi|13470499|ref|NP_102068.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
 gi|14021241|dbj|BAB47854.1| probable ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
          Length = 527

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 243/458 (53%), Positives = 309/458 (67%), Gaps = 10/458 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DLGLSPKV+ AV DAGY  PTPIQ   IP  L   D+ GIAQTGTGKTASFVLPML
Sbjct: 12  LTFSDLGLSPKVLSAVTDAGYTVPTPIQAGAIPHALLGKDILGIAQTGTGKTASFVLPML 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T LEKGRAR RMPRTLILEPTRELAAQV +NF KYGKN+ L +ALLIGG+ F+ Q+KKLE
Sbjct: 72  TRLEKGRARARMPRTLILEPTRELAAQVEENFVKYGKNHKLNIALLIGGVSFDEQDKKLE 131

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGADVLI TPGR+LDH  RGKLL+N +EILVIDEADRMLDMGFIP I+ I  ++PFTRQT
Sbjct: 132 RGADVLIATPGRLLDHRERGKLLLNGVEILVIDEADRMLDMGFIPDIERICEMIPFTRQT 191

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSST-AETIEHCFVATYAQYSKKCALLQQLL 239
           L FSATM  E+ K++E FL  P R+EV+  +S      +    +    + K+  L   + 
Sbjct: 192 LFFSATMPPEITKLTEKFLHAPVRVEVSKAASAATNITQRLVKSGSKPWDKRETLRNLIK 251

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +KN IIFCN+K  V  L  SL K  F   A+HG++DQR+RM++L+NF++G ++ +
Sbjct: 252 AEDAELKNAIIFCNRKVEVSELFRSLLKYDFDAGALHGDMDQRARMQMLANFRDGKLRYL 311

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLDIPDV HVFN+DVP  AE+Y+HRIGRTGRAGR GK+FT+  K D K+IDA
Sbjct: 312 VASDVAARGLDIPDVSHVFNYDVPIHAEDYVHRIGRTGRAGRSGKSFTIATKSDTKYIDA 371

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+LI  K++W +GDLS++     + D  +           +     DR ++    ++  
Sbjct: 372 IERLIGNKIEWHDGDLSTVVASEGEDDAPRRGKGAPRRAGRKDDDRKDRGERKKGGERRA 431

Query: 420 IPLKESEKISKLQQ---------DIQENDADSLGFRGN 448
              +E   +++ +Q         DI E  A     R  
Sbjct: 432 RHSEEDAAVAQQEQPDVAETAVADISERRARKEAIRSE 469


>gi|254693665|ref|ZP_05155493.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 3 str. Tulya]
 gi|261213932|ref|ZP_05928213.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|260915539|gb|EEX82400.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
          Length = 482

 Score =  226 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 260/478 (54%), Positives = 325/478 (67%), Gaps = 22/478 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGLSPKV+ AV  AGY  PTPIQ+  IP  L+R DV GIAQTGTGKTASFVLPMLT
Sbjct: 3   TFAELGLSPKVIAAVEAAGYTAPTPIQVGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQ 240
            FSATM  E+ K++E FL +P RIEV   SSTA+T+      +    + K+  L   +  
Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D++KN IIFCN+KK+V  L  SL +  F   A+HG++DQR+RM +LS+FK+G ++L+V
Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V   D K++ AI
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAI 362

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH-------------------ARKNNPI-- 399
           E +I +K++W +GDLS+L    E  +  +                      A+  +P   
Sbjct: 363 ESMIGEKIEWHDGDLSTLAVSEEADEQPRKGRNARGKGKEKPKEKASKPVAAKTVDPAGQ 422

Query: 400 PQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
           PQ       R++   S       K   +  K ++D  ++    +GF  ++PAFML   
Sbjct: 423 PQPVIENQHRREAIRSSNEERRGKPQTEQHKRRRDRDDDGPAPVGFGNDIPAFMLIPT 480


>gi|148559195|ref|YP_001258911.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840]
 gi|148370452|gb|ABQ60431.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis
           ATCC 25840]
          Length = 482

 Score =  226 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 257/478 (53%), Positives = 321/478 (67%), Gaps = 22/478 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGLSPKV+ AV  AGY  PTPIQ   IP  L+R DV GIAQTGTGKTASFVLPMLT
Sbjct: 3   TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQV +NF KYG ++ L VALLIGG+ FE Q +KLER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVEENFVKYGIDHRLNVALLIGGVSFEEQERKLER 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQ 240
            FSATM  E+ K++E FL +P RIEV   SSTA+T+      +    + K+  L   +  
Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D++KN IIFCN+KK+V  L  SL +  F   A+HG++DQR+RM +LS+FK+G ++L+V
Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V   D K++ AI
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAI 362

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI--------------------- 399
           E +I +K++W +GDLS+L    E  +  +     +                         
Sbjct: 363 ESMIGEKIEWHDGDLSTLAVSEEADEQPRKGRNARGKGKEKPKEKASKPVAAETVDPAGQ 422

Query: 400 PQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
           PQ       R++   S       K   +  K ++D  ++    +GF  ++PAFML   
Sbjct: 423 PQPVIENQHRREAIRSSNEERRGKPQTEQHKRRRDRDDDGPAPVGFGNDIPAFMLIPT 480


>gi|306840076|ref|ZP_07472862.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
 gi|306404804|gb|EFM61097.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
          Length = 482

 Score =  226 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 258/478 (53%), Positives = 321/478 (67%), Gaps = 22/478 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGLSPKV+ AV  AGY  PTPIQ   IP  L+R DV GIAQTGTGKTASFVLPMLT
Sbjct: 3   TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQ 240
            FSATM  E+ K++E FL +P RIEV   SSTA+T+      +    + K+  L   +  
Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D++KN IIFCN+KK+V  L  SL +  F   A+HG++DQR+RM +LS+FK+G ++L+V
Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V   D K++ AI
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTLSDTKYLAAI 362

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI--------------------- 399
           E +I +K++W +GDLS+L    E  +  +     +                         
Sbjct: 363 ESMIGEKIEWHDGDLSTLAVSEEADEQPRKGRNARGKGKDKPKKKASKPVAAETVDPAGQ 422

Query: 400 PQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
           PQ       R++   S       K   +  K ++D  ++    +GF  ++PAFML   
Sbjct: 423 PQPVIENQHRREAIRSSNEERRGKPQTEQHKRRRDRDDDGPAPVGFGNDIPAFMLIPT 480


>gi|121602645|ref|YP_988916.1| DEAD/DEAH box helicase domain-containing protein [Bartonella
           bacilliformis KC583]
 gi|120614822|gb|ABM45423.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain
           protein [Bartonella bacilliformis KC583]
          Length = 462

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 241/460 (52%), Positives = 307/460 (66%), Gaps = 6/460 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGLS KV+ AV  AGY  PTPIQ +TIP VLQ  DV GIAQTGTGKTASFVLPMLT
Sbjct: 7   NFDNLGLSAKVIKAVQLAGYTAPTPIQSETIPHVLQHKDVLGIAQTGTGKTASFVLPMLT 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRA+ RMPRTLILEPTRELAAQV +NF+KYG N+ L VALLIGG+ F+ Q++KLER
Sbjct: 67  LLEKGRAKARMPRTLILEPTRELAAQVKENFDKYGINHRLNVALLIGGVSFDHQDRKLER 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLI TPGR+LDHF RG LL+  +EILVIDEADRMLDMGFIP I+ I  L PFTRQTL
Sbjct: 127 GADVLIATPGRLLDHFERGTLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPFTRQTL 186

Query: 182 LFSATM-TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            FSATM  + ++   +              S+     +    +    + K+  L + +  
Sbjct: 187 FFSATMAPEIIKLTEQFLHSPVCVEITKESSTARTITQRLVKSGSKAWHKRAVLRKLIHD 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +KN I+FCN+KK++  L  SL K  FSV  +HG++DQ SRM  L++FKE  + L+V
Sbjct: 247 ENKELKNAIVFCNRKKDISELFRSLVKYNFSVGVLHGDMDQHSRMNTLADFKENKLTLLV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFN+DVP  AE+YIHRIGRTGRA R GKAFT+V K D K+I AI
Sbjct: 307 ASDVAARGLDIPDVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTKNDQKYISAI 366

Query: 361 EKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           EK+ ++ ++WL+GDLS+L N  +  I +   +       I + +    +       +K++
Sbjct: 367 EKISKENIEWLDGDLSTLINDEVNDISLKTKSTKSPKKNIQKNAIKMPKDNAEICVKKTN 426

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRG 459
                S+K        +E  +  L F  ++PAFML K R 
Sbjct: 427 NKATSSDK----HHSQKEKTSPILAFGADIPAFMLVKTRS 462


>gi|319405816|emb|CBI79446.1| ATP-dependent RNA helicase [Bartonella sp. AR 15-3]
          Length = 465

 Score =  225 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 246/459 (53%), Positives = 315/459 (68%), Gaps = 3/459 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS KV+ A+  AGY  PTPIQ  TIP +LQ+ D+ GIAQTGTGKTASFVLPMLT
Sbjct: 7   SFDNLGLSKKVINAIKSAGYTIPTPIQSGTIPHILQKRDILGIAQTGTGKTASFVLPMLT 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR R+PRTLILEPTRELA QV +NF+KYG N+NL VALLIGG+ FE Q++KLER
Sbjct: 67  LLEKGRARARIPRTLILEPTRELATQVQENFDKYGVNHNLNVALLIGGVSFEQQDRKLER 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLI TPGR+LDHF  GKLL+  IEILVIDEADRMLDMGFIP I+ I  L PFTRQTL
Sbjct: 127 GADVLIATPGRLLDHFEHGKLLLLGIEILVIDEADRMLDMGFIPNIERICKLTPFTRQTL 186

Query: 182 LFSATMTDELQKVSENF-LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            FSATM  E+ K+++ F             S+  +  +    +    + K+  L + + +
Sbjct: 187 FFSATMAPEITKLTKQFLHSPVYIEITKASSTAKKITQRLVKSGSKPWDKRAILRELIHK 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +KN IIFCN+KK++  L  SL K  FSV  +HG++DQ SR   L+NFK+  + L+V
Sbjct: 247 EGDELKNAIIFCNRKKDISELVRSLIKHNFSVGTLHGDMDQHSRTSTLANFKDNKLTLLV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+A+RGLDIP V HVFN+DVP  AE+YIHRIGRTGRA R GKAFT+V K D K+I AI
Sbjct: 307 ASDVASRGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTKADEKYISAI 366

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKID-IAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           E++ ++K++WLNGDLS+L    E  D +AQ   AR      QK      +K     + ++
Sbjct: 367 EEISQEKIEWLNGDLSTLIDYDETNDTVAQTKVARLQQKTAQKKHKTQTKKILEKEKLAY 426

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
           +  K++++     Q  ++     +GF  ++PAFML K  
Sbjct: 427 VKTKDNKE-ELSNQCHEKKTPIPIGFGNDIPAFMLIKKH 464


>gi|85374360|ref|YP_458422.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
 gi|84787443|gb|ABC63625.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
          Length = 455

 Score =  225 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 220/456 (48%), Positives = 292/456 (64%), Gaps = 10/456 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLSP+++ +V  AGY +PTPIQ + IP VL   D+ GIAQTGTGKTASFVLPM+
Sbjct: 1   MKFADLGLSPELLKSVEKAGYTEPTPIQEQAIPPVLMMKDIIGIAQTGTGKTASFVLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I+  GR R  MPR+LILEPTRELAAQVA+NFEKYG+N++L +ALLIGG+    Q K L 
Sbjct: 61  DIMAAGRRRALMPRSLILEPTRELAAQVAENFEKYGENHDLKMALLIGGVQMGDQIKALN 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR++D F RGK+L+N  E+LVIDEADRMLDMGFIP I+ I S +P  RQT
Sbjct: 121 EGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIEFICSKLPEQRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++K+S+ F+ NPKRIE    ++T + I    V    +  +      + L 
Sbjct: 181 MLFSATMPPPIEKLSKQFMSNPKRIETTRAATTNKDITAFRVNVGQRQKR---ETLEWLL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D ++  I+F N+K  V  L  SL+++GF    IHG+IDQ  R   L  FK+G I ++V
Sbjct: 238 ENDHVETAIVFANRKTTVRELNKSLQRRGFKSGEIHGDIDQNQRNAELQRFKDGEINILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDI  V HVFNFD P   ++Y+HRIGRTGRAG  G+AFT VA ED + ID +
Sbjct: 298 ASDVAARGLDIKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFTFVAPEDAEAIDNV 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EKL E K+     D    +  +E  D ++ +  +      ++S   D  K     +K   
Sbjct: 358 EKLTENKIKVFGKD----DVRVELKDPSKGDEQKPKPKRERQSREEDEEKPARKPRKRRD 413

Query: 421 PLKESEKISKLQQDIQENDADSL---GFRGNMPAFM 453
             +E  K S  ++  +E+  D++    + G  P F+
Sbjct: 414 ESEERPKRSTGRKPPREDRDDAVPAGEWNGPQPGFL 449


>gi|298291343|ref|YP_003693282.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
 gi|296927854|gb|ADH88663.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
          Length = 499

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 247/459 (53%), Positives = 313/459 (68%), Gaps = 10/459 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS KV+ AV DAGY +PTPIQ + IP VL R DV G+AQTGTGKTA+F LPML
Sbjct: 1   MPFNELGLSDKVLSAVADAGYTEPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LE+GRAR RMPRTLILEPTRELAAQV +NF KYGKN+ L VALLIGG+ F  Q+ KL 
Sbjct: 61  TMLEQGRARARMPRTLILEPTRELAAQVEENFTKYGKNHKLNVALLIGGVSFGDQDAKLL 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG+LL++ IEILVIDEADRMLDMGFIP I+ +  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHVERGRLLLSGIEILVIDEADRMLDMGFIPDIERVCKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+Q++   FL NP ++E + PSSTA  I    VA   +   K   L++L+ 
Sbjct: 181 LFFSATMPPEIQRLVAQFLSNPVQVEASRPSSTAANITQFLVACGKEDFAKRETLRELIN 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S D ++NGIIFCN+K  V  +  SL++ GF+V A+HG++DQRSRM+ L  F+ G   L+V
Sbjct: 241 SADNLQNGIIFCNRKSEVAVVHKSLKRHGFNVVALHGDMDQRSRMQALDQFRTGEANLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFN+D P+ AE+Y+HRIGRTGRAGR G AFTLV   D K + AI
Sbjct: 301 ASDVAARGLDIPAVSHVFNYDTPHHAEDYVHRIGRTGRAGRSGAAFTLVTPADTKSLAAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EKLI + +DW  G      PP E          R++ P   +  G +R +K    ++   
Sbjct: 361 EKLIGRSIDWREGSSLDALPPSEA-------RPRRDRPERGERKGGERGRKGEPREEERR 413

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRG 459
             + + +  K+++    ++A      G + A    + RG
Sbjct: 414 GARPARRREKVEEV---DNAPIAAAEGPVAARGERRPRG 449


>gi|218674642|ref|ZP_03524311.1| DEAD/DEAH box helicase domain protein [Rhizobium etli GR56]
          Length = 420

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 264/396 (66%), Positives = 325/396 (82%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS KV+ AV DAGY  PTPIQ   IP  L+R D+CGIAQTGTGKTASFVLPML+
Sbjct: 3   TFADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLS 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLER 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 123 GADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+QK+++ FLQNP+RIEV  P+S A+T+   FVA++++  +K A+L++L+++
Sbjct: 183 FFSATMPPEIQKLADRFLQNPERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLRELVRA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q  +KN IIFCN+KK+V +L  SLE+ GFSV A+HG++DQRSR  +L +F++G +QL+VA
Sbjct: 243 QGELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMMLQSFRDGNLQLLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFDVP  +E+Y+HRIGRTGRAGR G AFTLV K D K +DAIE
Sbjct: 303 SDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKFVDAIE 362

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           KLI +KV+WL+GD++SL P  E  D  +     ++ 
Sbjct: 363 KLIGEKVEWLSGDVNSLPPAEESADNERPRRNSRDR 398


>gi|170742455|ref|YP_001771110.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168196729|gb|ACA18676.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
          Length = 482

 Score =  224 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 246/472 (52%), Positives = 318/472 (67%), Gaps = 16/472 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+LGLS KV+ AV  AGY  PTPIQ + IP VL R DV G+AQTGTGKTA+F LPML
Sbjct: 1   MSFAELGLSEKVLQAVSAAGYTTPTPIQAQAIPHVLARRDVLGVAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T LE+GRAR RMPRTLILEPTRELAAQV +NFE+YG N+ L VALLIGG+ F  Q+ K+ 
Sbjct: 61  TRLEQGRARARMPRTLILEPTRELAAQVVENFERYGTNHKLNVALLIGGVSFADQDAKIT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDHF RGKLL+  +E+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+Q+++++FL NP RIEV  P+STA TI    VAT  +  +K   L+ L++
Sbjct: 181 LFFSATMPPEIQRLADDFLHNPVRIEVARPASTASTIAQRLVATGGEGHEKRKTLRGLIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               ++NG+IFCN+K++V  L  SL   GF+V A+HG++DQR+RM  L  F+ G + L+V
Sbjct: 241 GAVELRNGLIFCNRKRDVAQLQRSLANHGFNVAALHGDMDQRARMAALDAFRSGEVPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFNFDVP+ AE+Y+HRIGRTGRAGR G AFTLV + D K + AI
Sbjct: 301 ASDVAARGLDIPAVSHVFNFDVPHHAEDYVHRIGRTGRAGRSGAAFTLVGRGDEKALAAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE-KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           E LI + + W +GDL+SL    E      +       +   ++    +R ++    +++ 
Sbjct: 361 ESLIGQPIPWADGDLASLPEEEEGAPRERRTREREGRSKRGERGRRPERSREARPEERAR 420

Query: 420 IPLKESEKISKLQQDIQEN---------------DADSLGFRGNMPAFMLPK 456
            P  E    +   ++  ++                   +G   ++PAF+L  
Sbjct: 421 PPRAEERPRAARPEERPKDPRRAAARRRDEDDAMPEAEIGLGAHVPAFLLRP 472


>gi|254466325|ref|ZP_05079736.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I]
 gi|206687233|gb|EDZ47715.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I]
          Length = 467

 Score =  223 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 223/461 (48%), Positives = 301/461 (65%), Gaps = 9/461 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T
Sbjct: 3   KFTDLNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMIT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+  +++
Sbjct: 63  LLARGRARARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDALIDK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH------CFVATYAQYSKKCALL 235
            FSATM  E+++++  FL  P RIEV   ++ +ETIE                 K+  L 
Sbjct: 183 FFSATMAPEIERITNTFLSGPARIEVARQATASETIEQAVVQVKPSRRDREGSEKRTVLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +    D + NGIIFCN+K +V     SL+K G+   AIHG++DQ  R + L +F+EG+
Sbjct: 243 ALIDGEGDKLTNGIIFCNRKTDVDICAKSLKKYGYDAAAIHGDLDQSQRTRTLDSFREGS 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VASD+AARGLD+P V HVFNFDVP  AE+Y+HRIGRTGRAGR GKA T+    D K
Sbjct: 303 LRILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAITICTPRDEK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +DA+EKLI+K +  L   +    P  EK   +    A K +   Q +   D    + + 
Sbjct: 363 ALDAVEKLIQKDIKRLENPVKP-EPVQEKPSRSAKPDAAKPDTAKQDTAKADT--GSRAP 419

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPK 456
           +K     ++ E+ S   +  + +D   +G   ++P+F+   
Sbjct: 420 RKEDKAAQKPERSSPRGKYGKRDDKAVVGMGDHLPSFIALS 460


>gi|254293945|ref|YP_003059968.1| DEAD/DEAH box helicase [Hirschia baltica ATCC 49814]
 gi|254042476|gb|ACT59271.1| DEAD/DEAH box helicase domain protein [Hirschia baltica ATCC 49814]
          Length = 478

 Score =  223 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 221/475 (46%), Positives = 307/475 (64%), Gaps = 23/475 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L P+V+ AV + GY +PTPIQ + IP ++Q  DV GIAQTGTGKTA+FVLPM+
Sbjct: 1   MTFDDLDLDPRVLSAVKETGYTEPTPIQAQAIPAIIQGRDVTGIAQTGTGKTAAFVLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +GRA+ RMPRTLILEPTRELAAQVADNFEKYG N+ L +ALLIGG+ F  Q+KKL 
Sbjct: 61  HKLGQGRAKARMPRTLILEPTRELAAQVADNFEKYGVNHKLNMALLIGGVSFADQDKKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR++DHF RG+LLM  +++LVIDEADRMLDMGFIP I+ I  L+P  RQT
Sbjct: 121 AGVDVLIATPGRLMDHFERGRLLMTGVQMLVIDEADRMLDMGFIPDIEKICKLLPPRRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+ K+++ F  +PK+IEV  P+ TAE I      + +   +    + + + 
Sbjct: 181 LLFSATMPPEIAKLTKQFQNDPKQIEVARPAQTAELITQHVTKSPSDKDEIKRGILRAII 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   +KNGI+FCN+K+ V  +  SL   GF    IHG++ Q  RM+ L  FK G + L+V
Sbjct: 241 ASCEVKNGIVFCNRKREVDIVAKSLNAHGFDAAPIHGDLSQSYRMETLEKFKNGDLTLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDVGHVFN+  P  +++Y+HRIGRTGRAGR G+++T+V+  D K  DA+
Sbjct: 301 ASDVAARGLDIPDVGHVFNYAPPPNSDDYVHRIGRTGRAGRTGESYTIVSPRDQKLWDAV 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKID----------------IAQHNHARKNNPIP---Q 401
            K I K V+    D  ++   +E++                   ++ H +K++  P   +
Sbjct: 361 VKRISKDVEEFTND--AIKKSIEEVSSRPERKQNNKNENKNSKRRNRHTKKHDDTPNVEK 418

Query: 402 KSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPK 456
             +    + +N +S+ ++    + +K ++   D  +      G   ++PAF+L  
Sbjct: 419 VESTSVEQSENMASKNANDRADKKKKTNRRGHD--DLGPSFKGMGDHIPAFLLRP 471


>gi|118589105|ref|ZP_01546512.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Stappia aggregata IAM 12614]
 gi|118438434|gb|EAV45068.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Stappia aggregata IAM 12614]
          Length = 505

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 255/482 (52%), Positives = 331/482 (68%), Gaps = 20/482 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS KV+ AV  AGY +PT IQ   IP VL+R D+ GIAQTGTGKTASF LPML
Sbjct: 25  MAFNTLGLSEKVLAAVEAAGYKEPTAIQSGAIPQVLERRDILGIAQTGTGKTASFTLPML 84

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV +NF +YG N+ L +ALLIGG+ F  Q+KKL+
Sbjct: 85  TLLEKGRARARMPRTLILEPTRELAAQVEENFSRYGTNHKLNIALLIGGVSFSEQDKKLD 144

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQT
Sbjct: 145 RGTDVLIATPGRLLDHFERGKLLLQGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQT 204

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+Q+++E FLQNP RIEV   SSTAE +     AT ++  +K A L+ LL+
Sbjct: 205 LFFSATMPPEIQRLTETFLQNPARIEVAPTSSTAENVAQFLKATDSKDYEKRAALRDLLE 264

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + ++N I+FCN+K++V  +  SLE+  ++V A+HG++DQR+RM +L NF++GTI+L+V
Sbjct: 265 GAEDLQNAIVFCNRKRDVTTVYRSLERHEYNVGALHGDMDQRTRMMMLDNFRKGTIKLLV 324

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HVFNFDVP+ AE+Y+HRIGRTGRAGR G AFTLV  ED K++DAI
Sbjct: 325 ASDVAARGLDIPEVSHVFNFDVPSNAEDYVHRIGRTGRAGRKGTAFTLVTGEDQKYLDAI 384

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQH-----NHARKNNPIPQKSTGFDRRKKNYSS 415
           + LI+K +DWL GD        ++    +       +AR +N           R+++ S 
Sbjct: 385 QTLIKKDIDWL-GDAIDFEAAAQERKARRKAGKPSRNARSSNDNEATDAKPSSRRRSQSK 443

Query: 416 QK--------------SHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKL 461
            +              + IP+    +    ++   E    + G   ++PAF+L + R K 
Sbjct: 444 PREVVEEQVEELPEMLNPIPVSNLPQRQSGRRSRNEKLEPAFGAGVHIPAFLLREPRPKK 503

Query: 462 ND 463
             
Sbjct: 504 AS 505


>gi|307946857|ref|ZP_07662192.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
 gi|307770521|gb|EFO29747.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
          Length = 471

 Score =  222 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 251/477 (52%), Positives = 334/477 (70%), Gaps = 20/477 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS KV+ AV  +GY +PT IQ   IP VL+R DV GIAQTGTGKTASF LPML
Sbjct: 1   MTFKTLGLSDKVLSAVDASGYTEPTAIQAGAIPHVLERRDVLGIAQTGTGKTASFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV +NFEKYG N+ L VALLIGG+ F  Q+KKL+
Sbjct: 61  TLLEKGRARARMPRTLILEPTRELAAQVQENFEKYGTNHKLNVALLIGGVSFGEQDKKLD 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDHF RGKLL+  +E+LVIDEADRMLDMGFIP I+ I  L+PFTRQT
Sbjct: 121 RGTDVLIATPGRLLDHFERGKLLLQGVEVLVIDEADRMLDMGFIPDIERICKLIPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+Q+++E FLQNP R+EV   SST+E I H   A   +  +K A+L++LL+
Sbjct: 181 LFFSATMPPEIQRLTETFLQNPARVEVARTSSTSENISHYLRAAEGKDYEKRAVLRELLE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + + N I+FCN+K+++  L  SLE+ G+SV ++HG++DQR+RM +L NFK+GTI+L++
Sbjct: 241 GAEDLNNAIVFCNRKRDISTLFRSLERHGYSVGSLHGDMDQRTRMTMLDNFKKGTIKLLI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HVFN+DVP+ AE+Y+HRIGRTGRAGR G A+TLV+  D K++++I
Sbjct: 301 ASDVAARGLDIPEVSHVFNYDVPSHAEDYVHRIGRTGRAGRTGVAYTLVSGSDQKYLESI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN------NPIPQKSTGFD------- 407
           EKLI + ++WL GD        +     +    +K        P   ++  F+       
Sbjct: 361 EKLIAQDIEWL-GDPVDFEAAHQARKGRKRGKTQKPTNDNTAQPAQAEAQKFEVADDVNS 419

Query: 408 -RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
             RKKN   ++     +++      ++  ++N+  +     ++PAF+L + R K   
Sbjct: 420 GERKKNARPKQ-----RDTMNTHTKKRSEKKNNEPAFSGGVHIPAFLLREPRPKKAS 471


>gi|84686458|ref|ZP_01014352.1| ATP-dependent RNA helicase RhlE [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84665641|gb|EAQ12117.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
           HTCC2654]
          Length = 474

 Score =  221 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 225/471 (47%), Positives = 301/471 (63%), Gaps = 21/471 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL LSPKV+ AV +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T
Sbjct: 3   KFSDLNLSPKVLKAVEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMIT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q++ ++R
Sbjct: 63  MLARGRARARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDQLIDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  ++++V+DEADRMLDMGFIP I+ I  LVPFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLLTGVQVMVVDEADRMLDMGFIPDIERIFGLVPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY------SKKCALL 235
            FSATM  E+++++  FL NP R+EV   ++T E I        A         K+  L 
Sbjct: 183 FFSATMASEIERITNTFLSNPARVEVARQATTGENIAQEVCKFKASRRDRAATEKRRLLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             + +  +   N IIFCN+K +V  +  SL+K G+    IHG++DQ  RM+ L  F++GT
Sbjct: 243 ALIDREGEACTNAIIFCNRKMDVDVVAKSLKKYGYDAAPIHGDLDQSKRMETLQGFRDGT 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VASD+AARGLD+P V HVFNFDVP  AE+Y+HRIGRTGRAGR GKA  +    D K
Sbjct: 303 LRFLVASDVAARGLDVPAVSHVFNFDVPGHAEDYVHRIGRTGRAGRKGKAVMICEPRDEK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           ++DA+E+LIEK++  +   L     P+E+    +   AR  +    K    D+  ++   
Sbjct: 363 NLDAVERLIEKEIPRIESPLGD--APVEETPKPEKKSAR--SKPSDKPAREDKPARDDKP 418

Query: 416 QKSHIPLKESEKISKLQQDIQ----------ENDADSLGFRGNMPAFMLPK 456
            +   P K SE  SK + D +            D    G   ++P F+   
Sbjct: 419 ARDEAPAK-SEDASKSRSDTRSRGKPSGRGGRRDDAPTGMGDHLPDFIAKS 468


>gi|254469871|ref|ZP_05083276.1| ATP-dependent RNA helicase [Pseudovibrio sp. JE062]
 gi|211961706|gb|EEA96901.1| ATP-dependent RNA helicase [Pseudovibrio sp. JE062]
          Length = 476

 Score =  221 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 244/483 (50%), Positives = 327/483 (67%), Gaps = 26/483 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS KV+ AV  +GY +PT IQ   IP VL+R DV GIAQTGTGKTASF LPM+
Sbjct: 1   MSFSTLGLSEKVLAAVEASGYTEPTAIQAGAIPYVLERRDVLGIAQTGTGKTASFTLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV DNF +YG N+ L VALLIGG+ F  Q++KLE
Sbjct: 61  TLLEKGRARARMPRTLILEPTRELAAQVEDNFNRYGVNHKLNVALLIGGVSFAEQDRKLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGADVLI TPGR+LDHF RGKLL+  ++ILVIDEADRMLDMGFIP I+ I  L+PFTRQT
Sbjct: 121 RGADVLIATPGRLLDHFERGKLLLQGVDILVIDEADRMLDMGFIPDIERICKLIPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+Q++++ FLQNP ++EV   S+TAET+     A   +  +K A L++L++
Sbjct: 181 LFFSATMPSEIQRLTDTFLQNPAKVEVAKASTTAETVTQRIAAAEPEDYEKRAKLRELIE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + ++N I+FCN+K++V  L  SL +  FSV A+HG++DQRSRM +L NFK+G I+++V
Sbjct: 241 GAEDLQNAIVFCNRKRDVATLFRSLVRHEFSVGALHGDMDQRSRMTMLDNFKKGNIKILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFNFD+P +AE+Y+HRIGRTGRAGR G A ++V  +D K + AI
Sbjct: 301 ASDVAARGLDIPSVSHVFNFDLPIQAEDYVHRIGRTGRAGRDGTAISIVTGKDEKALQAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS-- 418
            + I K+++W+ G+    + P+E+        +R+ +   QK     R+ K  + +    
Sbjct: 361 NETIGKELEWV-GEPVDFSAPVEE------KKSRRRSTRGQKDKNRSRKSKAEAQEAPVQ 413

Query: 419 -----------------HIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKL 461
                            H   +   +    ++  Q  D        ++PAF+L + R K+
Sbjct: 414 EADSVPAGLEEQPMVPMHTERRAPARARGGRRANQPKDEAIFRNASHIPAFLLRETRSKV 473

Query: 462 NDK 464
             +
Sbjct: 474 QSR 476


>gi|220923247|ref|YP_002498549.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219947854|gb|ACL58246.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
           ORS 2060]
          Length = 465

 Score =  221 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 251/460 (54%), Positives = 317/460 (68%), Gaps = 1/460 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+LGLS KV+ AV  AGY  PTPIQ + IP VL R DV G+AQTGTGKTA+F LPML
Sbjct: 1   MSFAELGLSEKVLQAVSAAGYTTPTPIQAQAIPHVLARRDVLGVAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T LE+GRAR RMPRTLILEPTRELAAQV +NFE+YG N+ L VALLIGG+ F  Q+ K+ 
Sbjct: 61  TRLEQGRARARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALLIGGVSFADQDAKIT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDHF RGKLL+  +E+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+Q+++++FL NP RIEV  P+STA TIE   VAT  +  +K   L++L++
Sbjct: 181 LFFSATMPPEIQRLADDFLHNPVRIEVARPASTASTIEQRLVATGGEGHQKRKTLRRLIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +KNGIIFCN+K++V  L  SL   GF+V A+HG++DQR+RM  L  F+ G I L+V
Sbjct: 241 GAEELKNGIIFCNRKRDVAQLQKSLANHGFTVAALHGDMDQRARMAALDAFRSGEIPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFNFDVP+ AE+Y+HRIGRTGRAGR+G AFTLVA+ D K + AI
Sbjct: 301 ASDVAARGLDIPAVSHVFNFDVPHHAEDYVHRIGRTGRAGRNGSAFTLVARGDEKALAAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI + + W  GDL SL P  E  +  +     +     +        ++     K+  
Sbjct: 361 ESLIGQPIPWAEGDLGSL-PEEEPGEARERRPRERGGRGERGERSRRGERRTEERPKTPR 419

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
                   ++ + +        +G   ++PAF+L     K
Sbjct: 420 REDRPRAAARRRNEDDAMPEAEVGLGAHVPAFLLRPVILK 459


>gi|170747431|ref|YP_001753691.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653953|gb|ACB23008.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 527

 Score =  220 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 248/475 (52%), Positives = 320/475 (67%), Gaps = 17/475 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGLS KV+ AV  AGY +PTPIQ + IP VL R DV GIAQTGTGKTA+F LPML
Sbjct: 1   MPFSDLGLSEKVLNAVEAAGYTEPTPIQAEAIPHVLARRDVLGIAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LE GRAR RMPRTLILEPTRELAAQV +NF++YG N+ L VAL+IGG+ F  Q+ KL 
Sbjct: 61  TLLENGRARARMPRTLILEPTRELAAQVVENFDRYGTNHKLNVALIIGGVSFADQDAKLM 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDHF RGKLL+  +E+LVIDEADRMLDMGFIP I+ I  +VPFTRQT
Sbjct: 121 RGTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++++++ FL NP+R+EV  P+STA TI    VAT A+   K   L+ L++
Sbjct: 181 LFFSATMPPEIERLADMFLHNPQRVEVARPASTATTITQRLVATGAEGHAKRERLRGLIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++ +KNGIIFCN+K++V  L  SL   GF   A+HG++DQR+R   L  F+ G   L+V
Sbjct: 241 GEEDLKNGIIFCNRKRDVALLQKSLVSHGFDAAALHGDMDQRARTTALDGFRNGETALLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFNFDVP+  E+Y+HRIGRTGRAGR G A+TLVA +D + + AI
Sbjct: 301 ASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGTAYTLVAPDDARSLGAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKSTGFDRRKKNYSSQKSH 419
           E LI + + WL+GDL+S+       D +     R +      +  G   +    S  KS 
Sbjct: 361 EALIGQPIPWLDGDLTSVA------DASGDTGTRHRGRSSDGRRGGRSAKSGGRSGDKSA 414

Query: 420 IP----------LKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
                       +++S + +    +++E    S G RG   A   P +R +   +
Sbjct: 415 DKGGDKSADKGVVEKSARSAGEAGEVRERPTRSRGGRGAARAESRPDDRPESRSE 469


>gi|222148785|ref|YP_002549742.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
 gi|221735771|gb|ACM36734.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
          Length = 516

 Score =  220 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 257/422 (60%), Positives = 324/422 (76%), Gaps = 1/422 (0%)

Query: 9   SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
           S KV+ AV DAGY  PTPIQ   IP  L R D+CGIAQTGTGKTASFVLPMLT+LEKGRA
Sbjct: 2   SQKVLSAVTDAGYTVPTPIQAGAIPPALMRRDICGIAQTGTGKTASFVLPMLTLLEKGRA 61

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
           R RMPRTLI+EPTRELAAQVA+NFEKYGKN+ L +ALLIGG+ F+ Q++KLERGADVLIC
Sbjct: 62  RARMPRTLIMEPTRELAAQVAENFEKYGKNHKLNIALLIGGVSFDEQDRKLERGADVLIC 121

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR+LDH  RGKLLM  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL FSATM 
Sbjct: 122 TPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFSATMP 181

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
            E+QK+++ FLQNP+RIEV  PSSTA+T+    VA   +  +K + L+ ++++QD +KN 
Sbjct: 182 PEIQKLADKFLQNPERIEVAPPSSTAKTVTQRLVACQNKDYEKRSTLRDIIRAQDDLKNA 241

Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           IIFCN+KK+V +L  SLE+ GFSV A+HG++DQRSR  +L+ FK+  I L+VASD+AARG
Sbjct: 242 IIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTNMLAGFKDNQITLLVASDVAARG 301

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           LDIPDV HVFNFDVP  AE+Y+HRIGRTGRAGR G+AFTLV K D K++DAIEKLI +K 
Sbjct: 302 LDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGRAFTLVTKSDAKYLDAIEKLIGEKP 361

Query: 369 DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKI 428
           +WL+GD++SL PP+ + D  +       N   +  +  +   +    ++S    ++ ++ 
Sbjct: 362 EWLDGDVASL-PPMAEGDRDERRGRGGKNARDKSGSDRNGSDRGRGRERSRDGARDGDRE 420

Query: 429 SK 430
            +
Sbjct: 421 HR 422


>gi|56696327|ref|YP_166684.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
 gi|56678064|gb|AAV94730.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
          Length = 471

 Score =  220 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 219/463 (47%), Positives = 291/463 (62%), Gaps = 9/463 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T
Sbjct: 3   KFSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMIT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+  ++R
Sbjct: 63  LLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI------EHCFVATYAQYSKKCALL 235
            FSATM  E+++++  FL  P RIEV   ++ +ETI                  K+  L 
Sbjct: 183 FFSATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREASEKRAVLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +    +   N IIFCN+K +V  +  SL+K G+    IHG++DQ  R + L  F+EG 
Sbjct: 243 ALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFREGK 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++L+VASD+AARGLD+P V HVFNFDVP   E+Y+HRIGRTGRAGR GKA TL    D K
Sbjct: 303 LRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCIPRDEK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +DAIEKLI+K +  L     +   P  K    +   AR + P    +   +  K+    
Sbjct: 363 ALDAIEKLIQKDIPRLENPARTEEKPEAK-PRREEKPARADKPARSDADKREPVKREADK 421

Query: 416 QK--SHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPK 456
           +        K   K  + +    +  A  +G   ++P+F+   
Sbjct: 422 RDPVKREADKRDRKGGERRDRKDDRGARVVGMGDHLPSFIALS 464


>gi|260426960|ref|ZP_05780939.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
 gi|260421452|gb|EEX14703.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
          Length = 473

 Score =  220 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 212/464 (45%), Positives = 297/464 (64%), Gaps = 9/464 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L+PKV+ A+ +AGY  PTPIQ   IP  L   DV GIAQTGTGKTASF LPM+T
Sbjct: 3   KFSDLNLNPKVLKAIEEAGYETPTPIQAGAIPHALAGKDVLGIAQTGTGKTASFTLPMIT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K   LT ALLIGG+ F+ Q + +++
Sbjct: 63  ALARGRARARMPRSLVLCPTRELAAQVAENFDTYAKYVKLTKALLIGGVSFKEQEQLIDK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKL++ +++++V+DEADRMLDMGFIP I+ I SL PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIERIFSLTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET------IEHCFVATYAQYSKKCALL 235
            FSATM  E+++++  FL NP+R+EV   ++ +ET                   K+  L 
Sbjct: 183 FFSATMAPEIERITNTFLSNPERVEVARQATASETIEQGAVFFKGSRRDREATEKRDVLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q + +  +   N I+FCN+K +V  +  SL+K G++   IHG++DQ  R + L  F++G+
Sbjct: 243 QIIDREGEKCTNAIVFCNRKVDVDIVAKSLKKHGYNAEPIHGDLDQSQRTRTLDGFRDGS 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+L++ASD+AARGLD+P V HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V+  D K
Sbjct: 303 IRLLIASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAFTIVSPRDEK 362

Query: 356 HIDAIEKLIEKKVDWL---NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           + + +EKL++K++  +   N    +  P  E  D A  +   K +   +  +    R+++
Sbjct: 363 NFEDVEKLLQKEIPRVELPNMSAPAAVPTPEPEDTASEDQGEKKSTRVRSRSKKPEREES 422

Query: 413 YSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPK 456
             ++                     +D   +G   +MP F+   
Sbjct: 423 KPARAEKPSAPRRNDRGDRNDRNDRSDKGVVGMGDHMPEFIALS 466


>gi|114771836|ref|ZP_01449229.1| ATP-dependent RNA helicase RhlE [alpha proteobacterium HTCC2255]
 gi|114547652|gb|EAU50543.1| ATP-dependent RNA helicase RhlE [alpha proteobacterium HTCC2255]
          Length = 461

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 229/460 (49%), Positives = 306/460 (66%), Gaps = 7/460 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGLSPKV+ A+ D GY  PTPIQ + IP  L+  DV GIAQTGTGKTA F LPM+ 
Sbjct: 3   KFIDLGLSPKVMKAINDVGYDTPTPIQSEAIPHALEGRDVLGIAQTGTGKTAGFTLPMIH 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +GRAR RMPR+L+L PTRELAAQVA+NFE+Y K   L +ALLIGG+ F+ Q++ ++R
Sbjct: 63  KLARGRARARMPRSLVLAPTRELAAQVAENFEQYAKYVKLDMALLIGGVSFKDQDRLIDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  IEI+V+DEADRMLDMGFIP I+ I  L PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFKLTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL--- 238
            FSATM  E+ ++++ FLQNPK +EV   ++T+E I    +   A+  K  A  ++    
Sbjct: 183 FFSATMAPEINRITQEFLQNPKLVEVARQATTSENITQNVICFKAENRKLEAKKKRDLLR 242

Query: 239 ---LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                  + + NGI+FCN+K +V  +  SL+K G SV AIHG++DQR RM++L+ FK   
Sbjct: 243 TIIKDEGEKLTNGIVFCNRKVDVDIVMKSLKKHGHSVGAIHGDLDQRYRMEVLAGFKNND 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I L+VASD+AARGLDIP V HVFNFDVP  AE+Y+HRIGRTGRAGR G AF L    +IK
Sbjct: 303 ITLLVASDVAARGLDIPAVSHVFNFDVPIHAEDYVHRIGRTGRAGRKGWAFMLCLPHEIK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           H+D IE+L+++ +  L  +L  L     K  +   +   + NP+ +K    + + +  S+
Sbjct: 363 HLDKIEELVKQPIPRLEVELPKLKKQENKSRVKNIDTKIETNPLKKKQENKEEKSEAKSN 422

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLP 455
            K++   K     +     ++E  +   G   ++PAF+L 
Sbjct: 423 PKANNNTKIKNNPA-PSDAVKETKSPIKGLGEHVPAFLLR 461


>gi|299133793|ref|ZP_07026987.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
 gi|298591629|gb|EFI51830.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
          Length = 472

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 244/476 (51%), Positives = 314/476 (65%), Gaps = 21/476 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS KV+ AV   GY  PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MSFSNLGLSDKVLAAVAATGYTTPTPIQEQAIPHVLDRRDVLGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV +NF++YG    L VALLIGG+ F  Q+ KL 
Sbjct: 61  TLLEKGRARARMPRTLILEPTRELAAQVKENFDRYGVGQKLNVALLIGGVSFGDQDAKLG 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RGKLLM  +E+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHTERGKLLMTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM  E+++++E FL NP ++EV+ P+STA T+    ++T  +  +K  LL+QLL+
Sbjct: 181 LFFTATMPAEIRRITETFLHNPVKVEVSKPASTAVTVTQFQISTGKESHEKRELLRQLLR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +KN IIFCN+K+ V  L  SL+K GF   A+HG++DQ +RM  L  F++G + L+V
Sbjct: 241 DAKDLKNAIIFCNRKREVAILHKSLQKHGFGAAALHGDMDQSARMAALEQFRKGELPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HVFNFDVP+  ++Y+HRIGRTGRAGR G A ++V+  D K I AI
Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRLGTAISIVSPLDQKSILAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK--- 417
           EKLI + +    G   +    +E   +       +N P P+KS    +R K+   +K   
Sbjct: 361 EKLIGQSIPHAEGHARTAAASVEADAVIA-----ENGPAPRKSRRGGQRSKHRDREKTSA 415

Query: 418 -------------SHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
                        +  P      + +L       D    G   ++PAF+L   R +
Sbjct: 416 KPAAKPAPSPKSSARTPAAPPPSLGRLPMAAATQDHVEPGDHSHLPAFLLRPVRAR 471


>gi|260433500|ref|ZP_05787471.1| putative ATP-dependent RNA helicase RhlE [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417328|gb|EEX10587.1| putative ATP-dependent RNA helicase RhlE [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 476

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 223/467 (47%), Positives = 302/467 (64%), Gaps = 12/467 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASFVLPM+T
Sbjct: 3   KFTDLNLNPKVLKAIEEAGYETPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFVLPMIT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+  ++R
Sbjct: 63  LLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS------KKCALL 235
            FSATM  E++++++ FL  P RIEV   ++ +ETIE   V             K+  L 
Sbjct: 183 FFSATMAPEIERITDTFLSAPARIEVARQATASETIEQGVVMIKGGRRDREGSTKRKVLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +    D   N IIFCN+K +V     SL+K G+   AIHG++DQ  R + L  F+EG+
Sbjct: 243 ALIDAEGDKCTNAIIFCNRKTDVDITAKSLKKYGYDAAAIHGDLDQSVRTRTLEGFREGS 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VASD+AARGLD+P V HVFNFDVP+  E+Y+HRIGRTGRAGR GKA TL    D K
Sbjct: 303 LRFLVASDVAARGLDVPSVSHVFNFDVPSHPEDYVHRIGRTGRAGREGKAITLCTARDEK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKN 412
            ++AIEKLI+K++  L+  + +     E     + + A   +       K T  D+  K+
Sbjct: 363 ALEAIEKLIQKEIPRLDNPVEAEPAEAEDKKPEKKSRASTRKDERESEAKDTRKDQPIKD 422

Query: 413 YSSQKSHI---PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPK 456
            + +++     P +E  +  K +       +  +G   ++P+F+   
Sbjct: 423 ATPEEAATKDKPAREKGQRGKGRGRRDGGGSAVVGMGDHLPSFIALS 469


>gi|296446324|ref|ZP_06888270.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
 gi|296256225|gb|EFH03306.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
          Length = 419

 Score =  217 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 238/383 (62%), Positives = 282/383 (73%), Gaps = 1/383 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS KV+ AV  +GY +PTPIQ + IP  LQ  D+ GIAQTGTGKTA+FVLPML
Sbjct: 1   MTFDELGLSQKVLAAVETSGYTQPTPIQEQAIPPALQGRDILGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE+GRAR RMPRTLILEPTRELAAQV  +F KYG N+ L VALLIGG+ F  Q  K+ 
Sbjct: 61  CRLEQGRARARMPRTLILEPTRELAAQVEASFAKYGANHKLNVALLIGGMAFGDQEAKIM 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGADVLI TPGR+LD F+RGKLL+ NIEILVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGADVLIATPGRLLDFFDRGKLLLTNIEILVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+ +++E FL NP RIEV   SSTA TI    VAT+    K+   L++LL+
Sbjct: 181 LFFSATMPPEITRLTEAFLHNPVRIEVARASSTAATIRQALVATHGHAEKRE-TLRRLLR 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  KN IIFCN+K++V  L  SL+K GFS  A+HG++DQ +RM  L  FK G + L+V
Sbjct: 240 GAENFKNAIIFCNRKRDVAILHRSLDKHGFSAGALHGDMDQPARMASLDAFKNGDVALLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SD+AARGLDIPDV HVFNFDVP  +E+Y+HRIGRTGRAGR G A TLV  ED K++D I
Sbjct: 300 CSDVAARGLDIPDVSHVFNFDVPTHSEDYVHRIGRTGRAGRSGTAVTLVTGEDRKYLDQI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           E LI  K+DW    L  L P  +
Sbjct: 360 ETLIGNKIDWEGPRLDELPPAED 382


>gi|163759551|ref|ZP_02166636.1| ATP dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
 gi|162283148|gb|EDQ33434.1| ATP dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
          Length = 509

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 267/505 (52%), Positives = 329/505 (65%), Gaps = 53/505 (10%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS KV+ AV DAGY  PTPIQ   IP  L+R D+ GIAQTGTGKTASFVLPMLT
Sbjct: 3   TFADLGLSQKVLSAVTDAGYTTPTPIQAGAIPPALERRDILGIAQTGTGKTASFVLPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LE+GRAR RMPRTLILEPTRELAAQV +NFEKYGKN+ L + LLIGG+ FE Q +KLER
Sbjct: 63  MLERGRARARMPRTLILEPTRELAAQVHENFEKYGKNHRLNIVLLIGGVSFEEQYRKLER 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADVLI TPGR+LDH  RGKLLM  +E+LVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 123 GADVLIATPGRLLDHTERGKLLMTGVELLVIDEADRMLDMGFIPDIERIVKLIPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+QK+++ FLQNP RIEV  PSSTA T+    VA   +  +K   L+ L++S
Sbjct: 183 FFSATMPPEIQKLADKFLQNPARIEVAPPSSTAATVTQKLVACSGKDFEKRERLRDLIRS 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q  + N IIFCN+KK+V +L  SLEK GFSV A+HG++DQRSR  +L  FK+  I L+VA
Sbjct: 243 QTDLTNAIIFCNRKKDVADLYKSLEKHGFSVGALHGDMDQRSRTNMLQGFKDNEITLLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIP V HVFNFDVP  AE+Y+HRIGRTGRAGR G AFTLV + D K++DAI 
Sbjct: 303 SDVAARGLDIPAVSHVFNFDVPIHAEDYVHRIGRTGRAGREGAAFTLVNRRDTKYVDAIT 362

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN--------- 412
           KLI + ++WL+GD  +     +  +  +    R+++  P  S    R+            
Sbjct: 363 KLITRDIEWLDGDKFAGTASDDADEAPRR--GRRSDGKPGSSRCSGRKAGETETEAAKAE 420

Query: 413 ---------------------YSSQKSHIPLKESEKISKLQQDIQ--------------- 436
                                  +Q+S    +E  K +  QQ  Q               
Sbjct: 421 PINETAAVEPVANASAEPTAAPDAQESRPKRQEPSKRADPQQPKQASPEPANDDRNRNRR 480

Query: 437 ------ENDADSLGFRGNMPAFMLP 455
                 + D   +GF  ++PAFM+ 
Sbjct: 481 GGRNNEDRDPTPVGFGDDIPAFMMI 505


>gi|114704563|ref|ZP_01437471.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Fulvimarina pelagi HTCC2506]
 gi|114539348|gb|EAU42468.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Fulvimarina pelagi HTCC2506]
          Length = 508

 Score =  215 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 245/378 (64%), Positives = 300/378 (79%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++LGLS KV+ AV   GY +PTPIQ + IP  L+R DV GIAQTGTGKTASFVLPMLT
Sbjct: 3   TFSELGLSAKVLAAVEATGYTQPTPIQAEAIPHALERRDVLGIAQTGTGKTASFVLPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LEKGRAR RMPRTLI+EPTRELAAQV ++F +YGK   L VALLIGG+ FE Q+KKL+R
Sbjct: 63  MLEKGRARARMPRTLIIEPTRELAAQVEESFARYGKEQKLNVALLIGGMSFEEQDKKLDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  +EILVIDEADRMLDMGFIP I+ I  L+PFTRQTL
Sbjct: 123 GCDVLIATPGRLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLLPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+ K+++ FLQNP R+EV  P+S A T+E   VA+ A+   K A L+ LL++
Sbjct: 183 FFSATMPPEITKLTQQFLQNPVRVEVAKPASAALTVEQRLVASGAKDYDKRARLRDLLRA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + + N IIFCN+K++V  L  SLEK GFS  A+HG++DQR+RM +L NF+E  +QL+VA
Sbjct: 243 NEDVTNAIIFCNRKRDVSTLFRSLEKHGFSAGALHGDMDQRARMTMLHNFREDKLQLLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIP V HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFTLV K + KH+DAI+
Sbjct: 303 SDVAARGLDIPAVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSETKHLDAIK 362

Query: 362 KLIEKKVDWLNGDLSSLN 379
           KLI  +++WL+GDLS + 
Sbjct: 363 KLIGTEIEWLDGDLSKVE 380


>gi|94497443|ref|ZP_01304013.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
 gi|94423074|gb|EAT08105.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
          Length = 443

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 219/455 (48%), Positives = 293/455 (64%), Gaps = 20/455 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS +++ AV ++GY  PTPIQ + IP VL   D+ GIAQTGTGKTASFVLPM+
Sbjct: 1   MTFADLGLSDELLRAVTESGYDTPTPIQAQAIPSVLMMKDIIGIAQTGTGKTASFVLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  GRAR  MPR+LILEPTRELAAQVA+NFEKYGK + L++ALLIGG+    Q K LE
Sbjct: 61  DILAHGRARALMPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLIGGVQMGDQVKALE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR++D F RGK+L+N   +LVIDEADRMLDMGFIP I++I + +P  RQT
Sbjct: 121 KGVDVLIATPGRLMDLFERGKILLNGCNMLVIDEADRMLDMGFIPDIEHICTKLPAQRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++ FL NPK IEV  P++ +  I    V   A+  ++     + L 
Sbjct: 181 LLFSATMPPVIKKLADRFLSNPKSIEVARPATASTNIAQHLVKVDARKKREA---LRALL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +++ +IFCN+K  V  L  SL++ G+    IHG+IDQ SR+  L  F++GT+ ++V
Sbjct: 238 DGQQVQSAVIFCNRKTTVRELNKSLQRDGYKSGEIHGDIDQASRIAELERFRDGTVNILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDI  V HVFNFD P   ++Y+HRIGRTGRAG  G A+T V K+D + ID I
Sbjct: 298 ASDVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTFVTKDDAEAIDNI 357

Query: 361 EKLIEKKVDWLN--GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           +KLI  K+D+ +  G+ +   P  E              P P ++   +R  +    Q+ 
Sbjct: 358 QKLIGTKIDYADFAGETTDAEPKAE------------GKPAPTRTRRAERLDEQRKDQRR 405

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPAFM 453
               +     S  +Q     D    G+ G +P F+
Sbjct: 406 E---ERKAPASGPRQSKMPEDGPDEGWNGPVPEFL 437


>gi|323138624|ref|ZP_08073691.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
 gi|322396112|gb|EFX98646.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
          Length = 496

 Score =  215 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 240/499 (48%), Positives = 313/499 (62%), Gaps = 38/499 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS KV+ AV  +GY  PTPIQ + IP  LQ  D+ GIAQTGTGKTA+F LPML
Sbjct: 1   MTFDELGLSQKVLAAVQASGYTTPTPIQAQAIPPALQGRDILGIAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + LE+GRAR R+PRTLILEPTRELAAQV ++F KYG N+ L VALLIGG+ F  Q  K+ 
Sbjct: 61  SRLEQGRARARVPRTLILEPTRELAAQVEESFAKYGANHKLNVALLIGGVSFGDQEAKIM 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGADVLI TPGR+LD F+RGKLL+  IEILVIDEADRMLDMGFIP I+ +  LVPFTRQT
Sbjct: 121 RGADVLIATPGRLLDFFDRGKLLLTGIEILVIDEADRMLDMGFIPDIERVCKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+ +++E FL NP RIEV   S+TA TI    VA+     K+   L+ L++
Sbjct: 181 LFFSATMPPEITRLTEAFLHNPIRIEVARASTTASTIRQALVASRGHADKRE-TLRNLIR 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +KN I+FCN+K++V  L  SL K GF   A+HG++DQ +RM  L  FK G + ++V
Sbjct: 240 GAENLKNAIVFCNRKRDVAILHRSLVKHGFPAGALHGDMDQLARMASLDAFKNGDVAILV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SD+AARGLDIPDV HVFNFDVP  +E+Y+HRIGRTGRAGR G A T+V ++D K+ID I
Sbjct: 300 CSDVAARGLDIPDVSHVFNFDVPTHSEDYVHRIGRTGRAGRSGVAMTIVTEDDTKYIDQI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE-------------------------------KIDIAQ 389
           + LI K ++W      +L PP+E                                   A 
Sbjct: 360 QSLIGKAIEWEGPGFDALPPPMETSRPGERHGERGGRRERGGRGERGSRRQAPATEREAP 419

Query: 390 HNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSL-GFRGN 448
            +  R    + Q +     R    S+Q   + L   ++  +  +   E+D   + G   +
Sbjct: 420 PSIGRTPRAVRQHTDNGPVRAPRPSAQP--VALSSGDRRDRRPRRYHEDDGPPVIGLGDH 477

Query: 449 MPAFMLPK---NRGKLNDK 464
           +P+F+L        K+ ++
Sbjct: 478 VPSFLLRPVTLRPAKVGEE 496


>gi|312113545|ref|YP_004011141.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100]
 gi|311218674|gb|ADP70042.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 494

 Score =  214 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 227/491 (46%), Positives = 311/491 (63%), Gaps = 33/491 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS KV+ A+  AGY  PTPIQ + IP  L+  DV GIAQTGTGKTASFVLP+L
Sbjct: 1   MTFKDLKLSDKVLAAIDAAGYTTPTPIQAQAIPFALEGRDVVGIAQTGTGKTASFVLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +LE+GRAR RMPR+LILEPTRELAAQVA+ FE  G  + LTVALLIGG+ F+ Q KKLE
Sbjct: 61  NMLEQGRARARMPRSLILEPTRELAAQVAEAFETLGSQHKLTVALLIGGVSFDDQEKKLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGAD+LI TPGR+LDHF RGKLLMN ++ LVIDEADRMLDMGFIP I+ I  L+P +RQT
Sbjct: 121 RGADILIATPGRLLDHFGRGKLLMNAVDYLVIDEADRMLDMGFIPDIERICKLLPPSRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLL 239
           L FSATM  E+QK+++ FL+NP+++ V+ P++ A+ I      +     +K+  L + + 
Sbjct: 181 LFFSATMPPEIQKLTDQFLKNPEQVRVSAPATAAKNITQKLKFSPADSKTKRHVLRELMR 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T++N IIFCN+K++V  L  SL K GF+  A+HG++DQR R   L  F++G I  +
Sbjct: 241 SEVSTIQNAIIFCNRKRDVAVLHKSLVKHGFNAGALHGDLDQRQRTATLEAFRKGEITYL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            ASD+AARGLDIP+V HVFNFDVP   E+Y+HRIGRTGRAGR G A  +V  +++K + A
Sbjct: 301 AASDVAARGLDIPEVSHVFNFDVPISPEDYVHRIGRTGRAGRDGYAAMIVTPKEMKGVRA 360

Query: 360 IEKLIEKKVDWLNGDLSSLN-------------------------PPLEKIDIAQHNHAR 394
           IE L + K++W++G+ S+ N                              +   +     
Sbjct: 361 IENLCKAKIEWIDGEPSTENLAATDFSERRERSRRGERGGAGRGRSKEAAVATTEPRETA 420

Query: 395 KNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEK-----ISKLQQDI--QENDADSLGFRG 447
           +  PI Q++      +   ++  +  P +         +S+  +++      A  +G   
Sbjct: 421 EVRPIRQRAEPAGEVRSAPAAATAERPARNRRNGDGSSVSRYHRELLPPATSAPVVGLGD 480

Query: 448 NMPAFMLPKNR 458
           ++PAF++   R
Sbjct: 481 HVPAFLMRPVR 491


>gi|329114670|ref|ZP_08243429.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
 gi|326696150|gb|EGE47832.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
          Length = 637

 Score =  214 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 215/473 (45%), Positives = 281/473 (59%), Gaps = 17/473 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL LS  ++ A+ D GY  PTPIQ + IP +L   DV G+AQTGTGKTASF LPML
Sbjct: 153 ITFADLELSEPLLRAISDMGYTHPTPIQAQAIPAILMARDVMGVAQTGTGKTASFTLPML 212

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL   RAR RMPR+LILEPTRELA QVA+NF  YGK   L  ALLIGG     Q + L 
Sbjct: 213 EILADSRARARMPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMADQKEVLN 272

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LD F RG L++N+  ILVIDEADRMLDMGFIP I+ I  L+P  RQT
Sbjct: 273 RGVDVLIATPGRLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLPPNRQT 332

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++ FL +PK I V   SS A TI    V       +      + L 
Sbjct: 333 LLFSATMAPTIRKLADTFLHSPKEITVARQSSVATTITTGIVVVDEYSKR---ETLRQLL 389

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               ++N I+FCN+K++V  L  SL K GFS  A+HG++ Q  R   L  FK   ++++V
Sbjct: 390 KDPALQNAIVFCNRKRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKNDELKVLV 449

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SD+AARG+DI  + HVFNFD+P  AE+Y+HRIGRTGRAGR G A+++    D    +AI
Sbjct: 450 CSDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGREGHAYSIATPYDKALAEAI 509

Query: 361 EKLIEKKVDWL------NGDLSSLNPPLEKIDIAQHNHAR---KNNPIPQKSTGFDRRKK 411
           EKL  K++  +        + S    P        H   R   + NP P      ++++ 
Sbjct: 510 EKLTGKEIPRMALDGVKQLEWSDEKRPPAGRTRKPHTPQRNRERENPAP---AAREQQQP 566

Query: 412 NYSSQKSHIPLKESEKISKLQQD--IQENDADSLGFRGNMPAFMLPKNRGKLN 462
               Q++  P ++  + ++ Q+D        D  GF   +PAFML   R  + 
Sbjct: 567 EAKLQQTARPERQPTRNTRHQRDEIPPAPGGDVQGFGDMVPAFMLLPRRNSVR 619


>gi|258542730|ref|YP_003188163.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256633808|dbj|BAH99783.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636867|dbj|BAI02836.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639920|dbj|BAI05882.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-07]
 gi|256642976|dbj|BAI08931.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646031|dbj|BAI11979.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649084|dbj|BAI15025.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652071|dbj|BAI18005.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655128|dbj|BAI21055.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-12]
          Length = 636

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 213/471 (45%), Positives = 279/471 (59%), Gaps = 16/471 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL LS  ++ A+ D GY  PTPIQ + IP +L   DV G+AQTGTGKTASF LPML
Sbjct: 155 VTFADLELSEPILRAISDMGYTHPTPIQEQAIPAILMARDVMGVAQTGTGKTASFTLPML 214

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL   RAR RMPR+LILEPTRELA QVA+NF  YGK   L  ALLIGG     Q + L 
Sbjct: 215 EILSDSRARARMPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMADQKEVLN 274

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LD F RG L++N+  ILVIDEADRMLDMGFIP I+ I  L+P  RQT
Sbjct: 275 RGVDVLIATPGRLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLPPNRQT 334

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++ FL +PK I V   SS A TI    V       +      + L 
Sbjct: 335 LLFSATMAPTIRKLADAFLHSPKEITVARQSSVATTITTGIVVVDEYSKR---ETLRQLL 391

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               ++N I+FCN+K++V  L  SL K GFS  A+HG++ Q  R   L  FK   ++++V
Sbjct: 392 KDPALQNAIVFCNRKRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKNDELKVLV 451

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SD+AARG+DI  + HVFNFD+P  AE+Y+HRIGRTGRAGR G A+++    D    +AI
Sbjct: 452 CSDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGREGHAYSIATPYDKALAEAI 511

Query: 361 EKLIEKKVDWLNGD-------LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           EKL  K++  +  D            PP  +    +     + N +P        ++   
Sbjct: 512 EKLTGKEIPRMALDGVKQLEWSDEKRPPAGRTRKPRTPQRERENAVPTPR----EQQPEA 567

Query: 414 SSQKSHIPLKESEKISKLQQD--IQENDADSLGFRGNMPAFMLPKNRGKLN 462
             Q++  P ++  + ++ Q+D        D  GF   +PAFML   R  + 
Sbjct: 568 KPQQTARPERQPTRNTRHQRDEIPPAPGGDVQGFGDMVPAFMLLPRRSSVR 618


>gi|158424139|ref|YP_001525431.1| helicase [Azorhizobium caulinodans ORS 571]
 gi|158331028|dbj|BAF88513.1| helicase [Azorhizobium caulinodans ORS 571]
          Length = 582

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 226/412 (54%), Positives = 290/412 (70%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS KV+ AV   GY  PTPIQ + IP VL R DV G+AQTGTGKTA+F LPML
Sbjct: 64  MSFSELGLSEKVLSAVAATGYTTPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPML 123

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LE+GRAR RMPRTLILEPTRELAAQV +NF +YGKN+ L VALLIGG+ F  Q+ KL 
Sbjct: 124 TLLEQGRARARMPRTLILEPTRELAAQVEENFVRYGKNHKLNVALLIGGVSFGDQDTKLL 183

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG+LL++ IE+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 184 RGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERICKLVPFTRQT 243

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+Q++   FL NP R+EV+ P+S   +I    VA+  +  +K   L++L++
Sbjct: 244 LFFSATMPPEIQRLVSQFLSNPVRVEVSKPASANTSITQLLVASGREDYEKRETLRELIR 303

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D ++NGI+FCN+K++V  +  SL+K GF+V  +HG++DQ +R + L  F+ G   L+V
Sbjct: 304 NADQLQNGIVFCNRKRDVAVVHRSLQKHGFNVVCLHGDMDQHARTQALDQFRTGEATLLV 363

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFN+DVP+ +E+Y+HRIGRTGRAGR G A  LV  +D K + AI
Sbjct: 364 ASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRIGRTGRAGRTGTAIMLVTHDDAKSLAAI 423

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           EKLI   + W    L    P  ++         R       K +G  R ++ 
Sbjct: 424 EKLIGNAIPWQGEPLGEAPPREKRSRGGDRREERGERSERNKRSGRGRSERK 475


>gi|217977138|ref|YP_002361285.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
 gi|217502514|gb|ACK49923.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
          Length = 494

 Score =  213 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 237/480 (49%), Positives = 305/480 (63%), Gaps = 21/480 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS KV+ AV  +GY  PTPIQ + IP  L   DV GIAQTGTGKTA+F LPML
Sbjct: 1   MTFEELGLSAKVLQAVEASGYTTPTPIQAQAIPFALTGRDVLGIAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + LE+GRAR RMPRTLILEPTRELAAQV ++F +YG N+ + VALLIGG+ F  Q  K+ 
Sbjct: 61  SRLEQGRARARMPRTLILEPTRELAAQVEESFVRYGVNHKVNVALLIGGVSFADQEAKIT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGADVLI TPGR+LD   RGKLL+  IEILVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGADVLIATPGRLLDFAERGKLLLTGIEILVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+ +++E FL NP R+EV   SSTA TI    +A+    +K+   L++LL+
Sbjct: 181 LFFSATMPPEITRLTETFLHNPARVEVARASSTATTITQGLIASAPGPAKRE-TLRRLLR 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S    KN IIFCN+K++V  L  SL   GF+  A+HG++DQR+RM  L  FK G + L+V
Sbjct: 240 SAADFKNAIIFCNRKRDVALLHKSLLTHGFNAGALHGDLDQRARMASLDAFKTGEVALIV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SD+AARGLDIPDV HV NFDVP  AE+Y+HRIGRTGRAG+ G A T+V K D KHI  I
Sbjct: 300 CSDVAARGLDIPDVSHVLNFDVPTHAEDYVHRIGRTGRAGKSGVAITIVTKADQKHIAEI 359

Query: 361 EKLIEKKVDWLNG----DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG-FDRRKKNYSS 415
           EKLI + +D+L+G    D++            +     +    P ++     RR++    
Sbjct: 360 EKLIGRSIDFLDGKTMADVTEDGAEEAPERDERRPRRGERRSAPAEAEAPRSRRREKPEG 419

Query: 416 QKSHIPLKESEKI---------------SKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
            +                           + +   ++++A  +G   ++P F+L   + K
Sbjct: 420 ARQQPQPPAMAAAPAQAARSAAPPAPAREQRKPRREDDNAPVVGMGDHVPMFLLRPVKLK 479


>gi|254487565|ref|ZP_05100770.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
 gi|214044434|gb|EEB85072.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
          Length = 533

 Score =  213 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 214/466 (45%), Positives = 300/466 (64%), Gaps = 12/466 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+
Sbjct: 2   IKFSDLNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPMI 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ NLT ALLIGG+ F  Q+K ++
Sbjct: 62  TMLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLNLTKALLIGGVSFGEQDKLID 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR++DHF RGKL++++++I+V+DEADRMLDMGFIP I+ I  + PFTRQT
Sbjct: 122 KGVDVLIATPGRLIDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFQMTPFTRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET------IEHCFVATYAQYSKKCAL 234
           L FSATM  E+++++  FL NP RIEV   ++T E       +            K+  L
Sbjct: 182 LFFSATMAPEIERITNTFLSNPVRIEVARQATTGENIEQGVLMFKASRKDREATEKRKVL 241

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
              +    D   N IIFCN+K +V  +  SL+K G+    IHG++DQ  R K L  F+ G
Sbjct: 242 RALIDAEGDKCTNAIIFCNRKMDVDTVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFRNG 301

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            ++ +VASD+AARGLD+P V HV+NFDVP+ AE+Y+HRIGRTGRAGR GKA  +    D 
Sbjct: 302 DLRFLVASDVAARGLDVPSVSHVYNFDVPSHAEDYVHRIGRTGRAGRDGKAIMICVPRDE 361

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPL--EKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           K+++ +E+L+++++  L+  L    P    ++ D  +   A K    P+  T   +R + 
Sbjct: 362 KNLEDVERLVQREIPRLDNPLGGDAPAETTKEADAPKAEDAPKAEDAPK--TEKPKRSRT 419

Query: 413 YSSQKSHIPLKESEKISKLQQDIQENDADSLGFR--GNMPAFMLPK 456
            S +K   P  E+ K+  ++ + +     +   +     PA   PK
Sbjct: 420 RSRKKDDAPKDETPKVDAVEPEAKAETPQAKAAQQPDAKPAAEEPK 465


>gi|126740399|ref|ZP_01756087.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6]
 gi|126718535|gb|EBA15249.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6]
          Length = 506

 Score =  212 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 224/463 (48%), Positives = 303/463 (65%), Gaps = 8/463 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T
Sbjct: 37  KFTDLNLNPKVLKAIYEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMIT 96

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q++ +++
Sbjct: 97  LLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDQLIDK 156

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL
Sbjct: 157 GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTL 216

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY------SKKCALL 235
            FSATM  E+++++  FL  P+R+EV   ++T+E IE   V   A         K+  L 
Sbjct: 217 FFSATMAPEIERITNTFLSAPERVEVARQATTSENIEQSVVMFKASRKDREGSEKRRVLR 276

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             + Q  D + NGIIFCN+K +V  +  SL+K GF    IHG++DQ  R K L  F++G+
Sbjct: 277 TLIEQEGDKLTNGIIFCNRKTDVDIVAKSLKKYGFDAAPIHGDLDQSQRTKTLDGFRDGS 336

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VASD+AARGLD+P V HVFNFDVP  AE+Y+HRIGRTGRAGR GKA T+ A  D K
Sbjct: 337 LRILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAITICAPRDEK 396

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR--KKNY 413
            + A+E L++K++  L   +    P   K +  Q + A        K    ++   KK+ 
Sbjct: 397 ALAAVEDLVKKEIARLENPVKKPEPKKRKSNKDQKDAAEIAADAVTKPEPVEKSDTKKHV 456

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPK 456
           S      P  +  +    +Q  + +D   +G   +MP+F+   
Sbjct: 457 SKHSDEAPQPKGNRGRGGKQGGRRDDRVVVGMGDHMPSFIALS 499


>gi|110680443|ref|YP_683450.1| ATP-dependent RNA helicase, putative [Roseobacter denitrificans OCh
           114]
 gi|109456559|gb|ABG32764.1| ATP-dependent RNA helicase, putative [Roseobacter denitrificans OCh
           114]
          Length = 505

 Score =  212 bits (539), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 210/474 (44%), Positives = 299/474 (63%), Gaps = 21/474 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++L L+PKV+ A+ +AGY  PTPIQ   IP  L   DV GIAQTGTGKTASF LPM+
Sbjct: 22  IKFSELNLNPKVLKAIDEAGYETPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMI 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+K ++
Sbjct: 82  TLLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDKLID 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQT
Sbjct: 142 KGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET------IEHCFVATYAQYSKKCAL 234
           L FSATM  E+++++  FL  P+RIEV   ++T+ET      +            K+  L
Sbjct: 202 LFFSATMAPEIERITNTFLSAPERIEVARQATTSETIEQGVLMFKASRKDREGTEKRKVL 261

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
              +    +   N I+FCN+K +V  +  SL+K  +    IHG++DQ  R + L  F++G
Sbjct: 262 RALIDAEGEKCTNAIVFCNRKTDVDIVAKSLKKYNYDAAPIHGDLDQSQRTRTLDGFRDG 321

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           +++ ++ASD+AARGLD+P V HVFNFDVP  AE+Y+HRIGRTGRAGR GKA  +    D 
Sbjct: 322 SLKFLIASDVAARGLDVPAVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAIMICVPRDE 381

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID----IAQHNHARKNNPIPQKSTGFDRRK 410
           ++++ IE+L+++++  L+  L +   P EK       A     R     P+KS      +
Sbjct: 382 RNLEDIERLVQREIPRLDNPLGTKEAPKEKAPDGEAAASEKPKRTRTRAPRKSDKPQETE 441

Query: 411 KNYSSQKS---HIPLKESEKISKLQQDIQENDADS--------LGFRGNMPAFM 453
              + ++      P +E  +     +  +  +A++        +G   + P F+
Sbjct: 442 AEKTPEEPTVDATPAQEPAQKPARSRGGRNRNANTGKDRGPGVIGLGDHTPEFI 495


>gi|296116543|ref|ZP_06835153.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976755|gb|EFG83523.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 539

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 218/478 (45%), Positives = 282/478 (58%), Gaps = 25/478 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGLS  +  A+ + GY  PTPIQ + IP +L   DV G+AQTGTGKTASF LPML I
Sbjct: 50  FSELGLSAPIQQAIEEMGYRHPTPIQAQAIPYILMGRDVLGVAQTGTGKTASFTLPMLEI 109

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   RAR RMPR+LILEPTRELA QVA+NF  YGK+  LT ALLIGG     Q + L RG
Sbjct: 110 LSGSRARARMPRSLILEPTRELALQVAENFVNYGKHLKLTHALLIGGESMAEQKEALNRG 169

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR++D F RG LL+   ++LVIDEADRMLDMGFIP I+ I S++   RQTL 
Sbjct: 170 VDVLIATPGRLIDLFERGGLLLTQTKLLVIDEADRMLDMGFIPDIEKIVSMLSPIRQTLF 229

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++++++ FL NPK I V+ PSS A TIE   V       ++     + L  +
Sbjct: 230 FSATMAPEIRRLADMFLHNPKEITVSRPSSVASTIETGLVIVEEDDKRRA---LRKLLRE 286

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             M+N IIFCN+K++V  LC SL K GFS  A+HG++ Q  R   L  FK G ++++V S
Sbjct: 287 SDMQNAIIFCNRKRDVDVLCKSLLKHGFSAGALHGDLPQSLRFSTLEAFKSGELKILVCS 346

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HVFNFD+P  AE+Y+HRIGRTGRAGR G A++L    +    +AIEK
Sbjct: 347 DIAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGRTGHAYSLATPYEQPLAEAIEK 406

Query: 363 LIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARK--NNPIPQKSTGFDRRKKNYS 414
           L  K +  L        + S    P  +    +    R     P P   T    RK    
Sbjct: 407 LTGKPIVRLEVKGIDQTEWSDEPRPRGRKRGGKPAEVRTTPQAPAPTGKTSAPSRKPAVE 466

Query: 415 SQKSHIP--------------LKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
           S+ +  P                     +   ++   N+    GF G++PAFML   R
Sbjct: 467 SRNAVAPTAVSATAAPPARPASPPRHAATAHAREEHGNERPQAGFGGDIPAFMLLPRR 524


>gi|307294408|ref|ZP_07574252.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306880559|gb|EFN11776.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 454

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 213/453 (47%), Positives = 289/453 (63%), Gaps = 5/453 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS +++ AV +AGY  PTPIQ + IP VL   D+ GIAQTGTGKTASFVLPM+
Sbjct: 1   MTFADLGLSDELLKAVTEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  GRAR  MPR+LILEPTRELAAQVA+NFEKYGK + L +ALLIGG+    Q K LE
Sbjct: 61  DILAHGRARALMPRSLILEPTRELAAQVAENFEKYGKYHKLNMALLIGGVQMGDQLKALE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR++D F RGK+L+N   +LVIDEADRMLDMGFIP I+ I + +P  RQT
Sbjct: 121 KGVDVLIATPGRLMDLFQRGKILLNGCNMLVIDEADRMLDMGFIPDIEEICTKLPAQRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++ FL NPK IEV  P++ +  I           S+K     + + 
Sbjct: 181 LLFSATMPPVIKKLADRFLSNPKSIEVARPATASTNI---TQRLVKVDSRKKREALRAML 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + + + +IFCN+K  V +L  SL++ GF    IHG+IDQ +R+  L  F+ G++ ++V
Sbjct: 238 EAEDVLSAVIFCNRKTTVRDLNKSLQRHGFKSGEIHGDIDQSARIAELERFRAGSVNILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDI  V HVFNFD P   ++Y+HRIGRTGRAG  G A+T V  +D + ID I
Sbjct: 298 ASDVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTFVTADDAEAIDNI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           +KLI+++++ +  D  +   P E+         R   P  +     D R+          
Sbjct: 358 QKLIKQQIETI--DAPAAAAPAERAVEEPRRADRDRRPDRKSEKRRDERRHEEPRAARPE 415

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFM 453
             ++    ++ ++    +D    G+ G +P F+
Sbjct: 416 NTRQENNGARPRRRETVDDGPDDGWNGPVPEFL 448


>gi|85716308|ref|ZP_01047281.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
 gi|85696824|gb|EAQ34709.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
          Length = 482

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 239/482 (49%), Positives = 318/482 (65%), Gaps = 23/482 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS KV+ AV  AGY  PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MSFSHLGLSDKVLAAVAAAGYTSPTPIQDQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV + F+KYG    L VALLIGG+ F  Q+ KL 
Sbjct: 61  TLLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG LL+  +E+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM +E+++V++ FL NP+RIEV+ P++TA T+    V+   +  +K  LL+ LL+
Sbjct: 181 LFFTATMPNEIRRVTDAFLHNPQRIEVSRPATTAATVTQSQVSCSREPHEKRELLRHLLR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +KN IIFCN+K++V  +  SL+K GFSV A+HG++DQ +R   L  F++G + L+V
Sbjct: 241 EAKELKNAIIFCNRKRDVAIVYKSLQKHGFSVGALHGDMDQSARTASLDQFRKGELPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HV NFDVP+  ++Y+HRIGRTGRAGR G A T+V   D K + AI
Sbjct: 301 ASDVAARGLDIPEVSHVLNFDVPHHPDDYVHRIGRTGRAGRTGTAITIVCPADFKSLAAI 360

Query: 361 EKLIEKKVD--WLNGDLSSLNPPL--------------------EKIDIAQHNHARKNNP 398
           EKL  + +    L+G  ++ +  +                    EK   +    A++   
Sbjct: 361 EKLTGQPIPKAELSGYDANADEAVAEAGAPAKAGGRPSRSRHTHEKSGESHARGAKREGR 420

Query: 399 IPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
            P++S G  +R +  ++  +         I ++    +E  ++  G   ++PAF+L   R
Sbjct: 421 KPRRSGGDRQRHEAPAATAAASMAVPPPSIGRIPAPRREVISEP-GDHSHLPAFLLRPIR 479

Query: 459 GK 460
            +
Sbjct: 480 AR 481


>gi|84502634|ref|ZP_01000753.1| ATP-dependent RNA helicase RhlE [Oceanicola batsensis HTCC2597]
 gi|84389029|gb|EAQ01827.1| ATP-dependent RNA helicase RhlE [Oceanicola batsensis HTCC2597]
          Length = 471

 Score =  211 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 213/462 (46%), Positives = 296/462 (64%), Gaps = 7/462 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L PKV+ A+ DAGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T
Sbjct: 3   KFTDLNLDPKVLQAIADAGYESPTPIQQGAIPPALEGRDVLGIAQTGTGKTASFTLPMIT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+  ++R
Sbjct: 63  LLSKGRARARMPRSLVLAPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET------IEHCFVATYAQYSKKCALL 235
            FSATM  E+++++  FL  P R+EV   ++ +ET      +            K+  L 
Sbjct: 183 FFSATMAPEIERITNTFLSGPARVEVARQATASETIEQGVVMFKGSRRDREGSEKRQVLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             + +  +  +N IIFCN+K +V     SL+K GF    IHG+++Q  R K L  F++G+
Sbjct: 243 DLIDREGEDCRNAIIFCNRKTDVDVTAKSLKKYGFDAAPIHGDLEQSQRTKTLEGFRDGS 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VASD+AARGLDIP+V HVFNFDVP+ AE+Y+HRIGRTGRAGR GKA  +    D K
Sbjct: 303 LRFLVASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRIGRTGRAGRSGKAIMICVPRDEK 362

Query: 356 HIDAIEKLIEKKVDWLN-GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           ++  IE LIEK +  ++  +  +  P  +  + A      ++   P+  T      +  +
Sbjct: 363 NLADIESLIEKTIPRIDLPNAPAAKPEGDAPEKADKPKRTRSRGKPKTDTAEAEAAETPT 422

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPK 456
                  +   ++ ++  +  +E+++  +G   +MP+F+   
Sbjct: 423 RDDVPTEVPAPQQKARGGRRGREDESKVVGMGDHMPSFIALS 464


>gi|209885134|ref|YP_002288991.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
           carboxidovorans OM5]
 gi|209873330|gb|ACI93126.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
           carboxidovorans OM5]
          Length = 469

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 232/468 (49%), Positives = 308/468 (65%), Gaps = 9/468 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS KV+ AV   GY  PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MSFSHLGLSEKVLAAVAATGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV +N + Y     L +ALLIGG+ F  Q+ KL 
Sbjct: 61  TMLEKGRARARMPRTLILEPTRELAAQVQENIDHYCAGQKLNIALLIGGMSFGDQDAKLM 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+LI TPGR+LDH  RGKLL+  +E+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGVDILIATPGRLLDHTERGKLLLTGVEMLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM  E+++++E FL NP+++E++ P+STA T+    +   +    K  LL+QLL+
Sbjct: 181 LFFTATMPPEIRRITETFLHNPEKVEISRPASTATTVTQSQIGIGSDAHAKRELLRQLLR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +KN IIFCN+K++V  L  SL+K GF   A+HG++DQ +RM  L  F++G + L+V
Sbjct: 241 DAKDLKNAIIFCNRKRDVAILHKSLQKHGFGAAALHGDMDQSARMTALDQFRKGELPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HVFNFDVP   ++Y+HRIGRTGRAGR G A ++V+  D K I AI
Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPYHPDDYVHRIGRTGRAGRLGTAISIVSPTDQKSILAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIA-QHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           EKLI + +    G   S     E  + A +   A + +    + T    +  +  +  S 
Sbjct: 361 EKLIGQSIPHAEGSAPSSASSHEDGEQASESRSAPRKSRRGGQRTRQREKTASKPANGSP 420

Query: 420 IPLKESEKISK-------LQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
            P  ++            +   +Q++ ++      ++PAF+L   R +
Sbjct: 421 RPAAKAPAAQPPSLGRIPMAAAVQDHQSEP-ADHSHLPAFLLRPIRAR 467


>gi|209964678|ref|YP_002297593.1| DeaD [Rhodospirillum centenum SW]
 gi|209958144|gb|ACI98780.1| DeaD [Rhodospirillum centenum SW]
          Length = 528

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 221/456 (48%), Positives = 295/456 (64%), Gaps = 17/456 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL P+V+ A+ + GY  PTPIQ K IP VLQ  DV G AQTGTGKTASF LPM+
Sbjct: 1   MQFSELGLGPEVLQAISEVGYTTPTPIQEKAIPWVLQGRDVLGCAQTGTGKTASFTLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL +GRAR RMPR+LILEPTRELAAQVADNFE YGK + L +ALLIGG  F  Q KKLE
Sbjct: 61  EILAQGRARARMPRSLILEPTRELAAQVADNFEIYGKYHKLNMALLIGGESFGDQVKKLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR++D F RG +L+++I+ILVIDEADRMLDMGFIP I+ I  L+P  RQT
Sbjct: 121 RGVDVLIATPGRMIDLFERGNILLSDIKILVIDEADRMLDMGFIPDIERIVGLLPKLRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++++++ FL NP+ I   T +  A        A    Y +    + + L 
Sbjct: 181 LFFSATMPPEIRRLADQFLMNPREI---TVAPPASPAATVTQALAVAYDEDKRKVLRHLL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +KN  IFCN+KK+V  L  SL + GF+  A+HG++ Q  R + L  FK+G+I L+V
Sbjct: 238 QTEDVKNAFIFCNRKKDVGILHQSLSRHGFNAGALHGDMVQSKRTETLEAFKQGSIDLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SD+AARG+DI  V HVFNFDVP  AE+Y+HRIGRTGRAG  G+AFT+ A ED + + AI
Sbjct: 298 CSDVAARGIDIKGVSHVFNFDVPFNAEDYVHRIGRTGRAGLTGRAFTIAAPEDGRLVQAI 357

Query: 361 EKLIEKKVDWLNGD-LSSLNPPLEK----------IDIAQHNHARKNNP---IPQKSTGF 406
           EKLI +++  +  D L +     E+           D  +    RK+ P    P +S   
Sbjct: 358 EKLIGREIPRVLIDGLETPELEFEESGRGRRRPRRKDEGRKEEGRKSEPRSARPPRSRAA 417

Query: 407 DRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADS 442
           DR +   S+  + +P + + +  + ++ ++     +
Sbjct: 418 DRTEAGDSAAATPVPEERAARPERSERSVRARPERT 453


>gi|83858471|ref|ZP_00951993.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
 gi|83853294|gb|EAP91146.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
          Length = 480

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 223/477 (46%), Positives = 297/477 (62%), Gaps = 21/477 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGLSP ++ A+ DAGY KPTPIQ   IP+ L   DV GIAQTGTGKTASF LPM+
Sbjct: 1   MTFEDLGLSPALLSAIADAGYEKPTPIQEGAIPVALTGRDVLGIAQTGTGKTASFTLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +GRAR RMPR+L+L PTRELAAQVADN + Y KN+ L +ALLIGG+ FE Q K L+
Sbjct: 61  ERLSRGRARARMPRSLVLAPTRELAAQVADNVKLYAKNHKLNMALLIGGVSFEPQKKILD 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GAD+LI TPGR+LDHF RG LL+  +EILVIDEADRMLDMGFIP I+ I  L+P  RQT
Sbjct: 121 QGADILIATPGRLLDHFERGGLLLTGVEILVIDEADRMLDMGFIPDIERILKLLPPRRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++ + + FL++P+R+EV  P+ TA+TI    +      ++      +   
Sbjct: 181 LFFSATMPGEIKHLVDTFLRDPERVEVTRPAQTADTITQFILRVSDNQARTKREALRAAI 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++D +KNGIIFCN+K++V  +  SL++ GFS   IHG++DQ  R K L+ FK G ++L+V
Sbjct: 241 NRDGVKNGIIFCNRKRDVDIVARSLQRHGFSAAPIHGDLDQSQRTKTLAEFKSGELRLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFN D+P  A++Y+HRIGRTGRAG+ G+A TLV+ ED K +  +
Sbjct: 301 ASDVAARGLDIPAVSHVFNVDIPRNADDYVHRIGRTGRAGQKGEAVTLVSSEDNKALAKV 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
            KLI K+   L     +   P+ +   A+    +  +    +S      +   +      
Sbjct: 361 VKLIGKEPAELKLSGEAPEAPVAEASKAEAVDEKPKSRRRSRSRAKPEAEAPAAEAAKAE 420

Query: 421 PLKESEKISKLQQD---------------------IQENDADSLGFRGNMPAFMLPK 456
            + E        QD                       E D   +GF  ++P F+L  
Sbjct: 421 AVSERAPAPAPAQDKPERKERSSRNERSSRQDRRDRHERDLSPVGFGDHVPEFLLRP 477


>gi|254510324|ref|ZP_05122391.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221534035|gb|EEE37023.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 455

 Score =  210 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 221/461 (47%), Positives = 298/461 (64%), Gaps = 26/461 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T
Sbjct: 8   KFNELNLNPKVLKAIEEAGYESPTPIQEGAIPAALEGRDVLGIAQTGTGKTASFTLPMIT 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+  ++R
Sbjct: 68  LLARGRARARMPRSLVLCPTRELAAQVAENFDTYAKHLKLTKALLIGGVSFKEQDALIDR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL
Sbjct: 128 GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTL 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS------KKCALL 235
            FSATM  E++++++ FL  P R+EV   ++ +ETIE   V             K+  L 
Sbjct: 188 FFSATMAPEIERITDTFLSAPTRVEVARQATASETIEQGVVMFKGGRRDREASQKRKTLR 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +    D   N IIFCN+K +V     SL+K G+   AIHG++DQ  RMK L  F++GT
Sbjct: 248 ALIDAEGDKCTNAIIFCNRKTDVDICAKSLKKYGYDAAAIHGDLDQSQRMKTLDGFRDGT 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++L+VASD+AARGLD+P V HVFNFDVP   E+Y+HRIGRTGRAGR GKA T+ +  D K
Sbjct: 308 LRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGREGKAITICSGRDEK 367

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            + AIE LI+K++  ++  + +  P  E              P P+K       +K+ S 
Sbjct: 368 ALTAIESLIQKEIPRIDNPVKADEPKPE-------------APKPEKKARESESRKSESR 414

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPK 456
           +      +E +   + ++D  +N    +G   ++P F+   
Sbjct: 415 KD-----REPKGRGRGRRD--DNGRPVVGMGDHLPNFIALS 448


>gi|300023857|ref|YP_003756468.1| DEAD/DEAH box helicase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525678|gb|ADJ24147.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 540

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 231/461 (50%), Positives = 299/461 (64%), Gaps = 15/461 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLSPKV  AV+ AGYV PTPIQ   IP+ L   DV GIAQTGTGKTASFVLPM+T
Sbjct: 5   TFADLGLSPKVQAAVMAAGYVNPTPIQAAAIPVALTGRDVLGIAQTGTGKTASFVLPMIT 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            LE GRAR RMPR+LIL PTRELAAQVA +FEKYG N+ L+VALLIGG+  + Q KKL+R
Sbjct: 65  RLETGRARARMPRSLILAPTRELAAQVAQSFEKYGTNHKLSVALLIGGVSMDDQVKKLDR 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RG++++  +EILVIDEADRMLDMGFIP I+ I  L+P  RQTL
Sbjct: 125 GVDVLIATPGRLLDHFGRGRVMLMGVEILVIDEADRMLDMGFIPDIEKICKLLPPRRQTL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+ ++ + FL++P RIEV  P++TA+TI   FV            + + L  
Sbjct: 185 FFSATMPPEITRLVDQFLKDPTRIEVAKPATTAKTITQRFVYCQNGEDWAKREMLRELIR 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +KN IIFCN+K++V  L  SL K GF+   +HG++DQ SR + L  F+ G I L+ A
Sbjct: 245 DGNVKNAIIFCNRKRDVAVLYKSLSKHGFNAGELHGDMDQTSRTETLDKFRNGEIMLLAA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFNFD+P  A++Y+HRIGRTGRAGR G + +LV+ +D+K +  IE
Sbjct: 305 SDVAARGLDIPDVSHVFNFDLPWAADDYVHRIGRTGRAGREGHSASLVSPDDLKFVADIE 364

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK--IDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           K+  +   WL       +PP E+      +    R     PQ  +G     + + S+ + 
Sbjct: 365 KVTGETAIWLG------DPPSEEDIAGAGKRRRGRGGRGAPQAKSG-----RPHGSRDAR 413

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
            P  E  K++   Q  +++  +         A      + K
Sbjct: 414 KP--EPRKVNGAPQQREQHGGEQEAKAERPQAASPAPQQAK 452


>gi|326387193|ref|ZP_08208803.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208374|gb|EGD59181.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 481

 Score =  208 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 217/460 (47%), Positives = 283/460 (61%), Gaps = 10/460 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS +++ +V DAGY +PTPIQ + IP VL   D+ GIAQTGTGKTASFVLPM+
Sbjct: 22  MKFADLGLSDELLKSVYDAGYDEPTPIQAQAIPSVLMMRDLIGIAQTGTGKTASFVLPMI 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L  GR R  MPR+LILEPTRELAAQVA+NFEKYGKN++L +ALLIGG+    Q K L 
Sbjct: 82  DVLAHGRRRALMPRSLILEPTRELAAQVAENFEKYGKNHDLRMALLIGGVQMGDQVKALS 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR++D F RGK+L+   E+LVIDEADRMLDMGFIP I++I S +P TRQT
Sbjct: 142 DGVDVLIATPGRLMDLFERGKILLTGCELLVIDEADRMLDMGFIPDIESICSKLPTTRQT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++ FL NPK IEV      A    +      A  S+    + + L 
Sbjct: 202 LLFSATMPPPIKKLADRFLSNPKYIEVAR---PASANINIVQHKVACASRDKRKVLRHLL 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +   I+F N+K  V +L  SL++ GF+   IHG++DQ  R+  L  FK+G I ++ 
Sbjct: 259 RTDNVSTAIVFANRKTTVRDLAKSLKRHGFAAGEIHGDMDQPQRLAELQRFKDGQINILC 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLD+  V HVFNFD P   ++Y+HRIGRTGR G  G+AFTLV+ ED + I  +
Sbjct: 319 ASDVAARGLDVKGVSHVFNFDTPWHPDDYVHRIGRTGRGGASGRAFTLVSAEDAEAIANV 378

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EKL    +  +  DL       EK   A   H +     P K+     R       KS  
Sbjct: 379 EKLTGIPIPVITVDLGKDESEDEKPVRAPRKHTKDK---PAKTDEVLPRIAGDVETKSRA 435

Query: 421 PLKESEKISKLQ----QDIQENDADSLGFRGNMPAFMLPK 456
             K   K  + +    + + E   +   + G +P F+   
Sbjct: 436 AAKPPRKSERREVRQPEPVFEPVGEPSAWNGPIPGFLHVS 475


>gi|114569874|ref|YP_756554.1| DEAD/DEAH box helicase domain-containing protein [Maricaulis maris
           MCS10]
 gi|114340336|gb|ABI65616.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10]
          Length = 498

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 219/498 (43%), Positives = 310/498 (62%), Gaps = 49/498 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+LGLSPK++ A+ +AGY +PTPIQ   IP  L   DV GIAQTGTGKTASF LP++
Sbjct: 1   MTFAELGLSPKLLEAIQEAGYSEPTPIQAGAIPAALAGRDVLGIAQTGTGKTASFTLPLI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +GRA+ RMPR+LI+ PTRELAAQ A+NFE Y K   L++ALLIGG+ F  Q + L 
Sbjct: 61  ERLSRGRAKARMPRSLIIAPTRELAAQCAENFETYSKGQKLSMALLIGGVAFGPQEEILN 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ--NITSLVPFTR 178
           +GADVLI TPGR+LDHF RGKLLM  +++LV+DEADRMLDMGFIP ++           R
Sbjct: 121 KGADVLIATPGRLLDHFGRGKLLMTGVQMLVVDEADRMLDMGFIPDLEKIFSLVPPAPRR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM  E+Q + + FL++P+R+EV+ P+ T   I    +      +K   L  + 
Sbjct: 181 QTLFFSATMPKEIQSLVDRFLRDPERVEVSRPAQTGANITQLMIRLTDNSAKAKRLALRQ 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S++ +KNGIIF N+K++V  +  SL++ GFS   IHG++DQ +R   L++FK GT++ 
Sbjct: 241 AMSREGVKNGIIFSNRKRDVDVVARSLQRHGFSAAPIHGDLDQSARTATLADFKAGTLRF 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASD+AARGLDIPDV HVFN+D+P+ A++Y+HRIGRTGRAG+ G++ T+ A  D K + 
Sbjct: 301 LVASDVAARGLDIPDVSHVFNYDMPHHADDYVHRIGRTGRAGKSGESVTIFAPGDEKSLA 360

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           A+ KLI++++  L  D  + + P  K   A    A+     P+ ++   R +K   S+KS
Sbjct: 361 AVLKLIKEEIPELVLD-GNGDAPASK---ASSPDAKSEAAAPKTASTRTRTRKPRVSRKS 416

Query: 419 H-------------------------IPLK-----------------ESEKISKLQQDI- 435
                                      P+K                 +S + S  ++D  
Sbjct: 417 AEAEAPPKTPSPAAEPETADAAIVDTAPVKQAQDTETARENTSPSKRQSNRRSGSKRDRG 476

Query: 436 QENDADSLGFRGNMPAFM 453
           Q+ +  ++GF  ++P+FM
Sbjct: 477 QDKERSTIGFGDHVPSFM 494


>gi|83952321|ref|ZP_00961053.1| ATP-dependent RNA helicase RhlE [Roseovarius nubinhibens ISM]
 gi|83837327|gb|EAP76624.1| ATP-dependent RNA helicase RhlE [Roseovarius nubinhibens ISM]
          Length = 552

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 211/449 (46%), Positives = 302/449 (67%), Gaps = 10/449 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L+ KV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPML+
Sbjct: 3   KFSELNLNAKVLKAIDEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMLS 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q + +++
Sbjct: 63  LLARGRARARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQEQIIDK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKL++++++++V+DEADRMLDMGFIP I+ I  L PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET------IEHCFVATYAQYSKKCALL 235
            FSATM  E+++++  FL NP R+EV   ++ +ET      +            K+  L 
Sbjct: 183 FFSATMAPEIERITNTFLSNPARVEVARQATASETIEQGVVMFKGSRRDREASEKRNVLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + +    D   N IIFCN+K +V  +  SL+K G+    IHG++DQ  R + L +F+ G 
Sbjct: 243 KLIDAEGDKCTNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTRTLESFRAGD 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VASD+AARGLD+P V HVFNFDVP+ AE+Y+HRIGRTGRAGR GKA  + +  D K
Sbjct: 303 LRFLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGKAMMICSARDEK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           + DAIEKLI+K++  ++  L +   P ++ D A+ + A  + P P+++    RR K+ S+
Sbjct: 363 NFDAIEKLIQKEIPRIDNPLGT--APSDEGDNAKPDSAEGDKPKPRRTR--SRRGKSDSA 418

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLG 444
           + +     ++      +    ++DA ++ 
Sbjct: 419 RDTARDTADAAPAEATEAVATKSDAPAVA 447


>gi|114764595|ref|ZP_01443799.1| ATP-dependent RNA helicase RhlE [Pelagibaca bermudensis HTCC2601]
 gi|114542971|gb|EAU45991.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. HTCC2601]
          Length = 502

 Score =  207 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 219/495 (44%), Positives = 305/495 (61%), Gaps = 42/495 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T
Sbjct: 3   KFSDLNLNPKVLKAIEEAGYETPTPIQAGAIPHALEGKDVLGIAQTGTGKTASFTLPMIT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K   LT ALLIGG+ F+ Q + +++
Sbjct: 63  SLARGRARARMPRSLVLCPTRELAAQVAENFDTYAKYVKLTKALLIGGVSFKEQEQLIDK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKL++ +++++V+DEADRMLDMGFIP I+ I SL PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIERIFSLTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET------IEHCFVATYAQYSKKCALL 235
            FSATM  E+++++  FL NP+RIEV   ++ +ET                   K+  L 
Sbjct: 183 FFSATMAPEIERITNTFLSNPERIEVARQATASETIEQGAVFFKGSRKDREGSEKRTVLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q + +  +   N I+FCN+K +V  +  SL+K G++   IHG++DQ  R + L  F+EG+
Sbjct: 243 QLIDREGEKCTNAIVFCNRKVDVDIVAKSLKKYGYNAEPIHGDLDQSQRTRTLEGFREGS 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+L++ASD+AARGLD+P V HVFNFDVP  AE+Y+HRIGRTGRAGR GKAFT+V   D K
Sbjct: 303 IRLLIASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAFTIVVPRDEK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPP--------LEKIDIAQHN---HARKNNP------ 398
           + + +EKL++K++  +  +L  +  P         EK D         +RK++       
Sbjct: 363 NFEDVEKLLQKEIPRV--ELPGVKAPAKAEATADEEKTDAKPKRTRSRSRKSDKSDKVNA 420

Query: 399 -----------------IPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDAD 441
                             P++S      K       +  P  +  +  K +    ++D +
Sbjct: 421 PAEATAAEAPATEAPVEAPEESKDTKESKAPAQKSGADKPRSDRGRSDKGRGRGSKSDNN 480

Query: 442 SLGFRGNMPAFMLPK 456
            +G   +MP F+   
Sbjct: 481 VVGMGDHMPEFIALS 495


>gi|315499759|ref|YP_004088562.1| dead/deah box helicase domain protein [Asticcacaulis excentricus CB
           48]
 gi|315417771|gb|ADU14411.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB
           48]
          Length = 501

 Score =  207 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 220/496 (44%), Positives = 298/496 (60%), Gaps = 41/496 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL+P ++ AV D GY  PT IQ + IP+ L   DV GIAQTGTGKTA+F LPM+ 
Sbjct: 3   KFTDLGLNPDILKAVADTGYDTPTAIQEQAIPIALIGLDVLGIAQTGTGKTAAFTLPMIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L  GR+R RMPR ++L PTRELA QVA+ FEKY K   L  ALLIGG+    Q  KL++
Sbjct: 63  KLASGRSRARMPRAIVLAPTRELADQVAEAFEKYAKYCKLNWALLIGGVSMADQVAKLDK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LD F R K+++N ++++V+DEADRMLDMGFIP I+ I  L P +RQTL
Sbjct: 123 GVDVLIATPGRLLDLFERSKVMLNGVQLMVVDEADRMLDMGFIPDIERIFKLTPPSRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ----Q 237
            FSATM  E+ +++E FL+NP RIEV+ P++T E I        +  SK  A  +    +
Sbjct: 183 FFSATMPPEITRLTEQFLKNPVRIEVSRPATTNENITQYVYRVPSGDSKLLAKAKRLALR 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  Q  + NGI+FCN+K +V  +  SL   GF+   IHG++DQ  RMK L  F+ G ++
Sbjct: 243 TLIGQLEINNGIVFCNRKTDVDIVAKSLSVHGFNAAPIHGDLDQSLRMKTLDAFRSGELK 302

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VASD+AARGLDIP V HVFNFDVP+ A++Y+HRIGRTGRAGR G+A+ ++A  D K+ 
Sbjct: 303 LLVASDVAARGLDIPSVSHVFNFDVPHHADDYVHRIGRTGRAGRTGEAYLILAPNDEKNY 362

Query: 358 DAIEKLIEKKVDWLNGD-----LSSLNPPLEKIDIAQ-HNHARKNNPIPQKSTGF----- 406
           D + KLI+K+ + L  D     L+   P  EK    +     R  +  P++  G      
Sbjct: 363 DKVLKLIKKEPNTLELDVDWSPLADARPEREKPARGRGERTERDRSARPRRERGRKGESA 422

Query: 407 ---------------------DRRKKNYSSQKSHIPLKESEKIS-----KLQQDIQENDA 440
                                +++ +   S  +  P   ++ +S     K  +D      
Sbjct: 423 VEAVTEAVVPEEIVVDAAPPPEKKTRRRKSTAADTPPPRAKAVSDDFPLKDNEDSLPKGP 482

Query: 441 DSLGFRGNMPAFMLPK 456
           D  GF G++PAFML  
Sbjct: 483 DCQGFGGHVPAFMLRS 498


>gi|89070152|ref|ZP_01157481.1| ATP-dependent RNA helicase RhlE [Oceanicola granulosus HTCC2516]
 gi|89044269|gb|EAR50415.1| ATP-dependent RNA helicase RhlE [Oceanicola granulosus HTCC2516]
          Length = 477

 Score =  207 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 212/468 (45%), Positives = 301/468 (64%), Gaps = 13/468 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T
Sbjct: 3   KFSDLNLNPKVLKAIEEAGYETPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFTLPMIT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q++ +++
Sbjct: 63  LLHRGRARARMPRSLVLCPTRELAAQVAENFDIYAKHTKLTKALLIGGVSFKEQDQLIDK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I  L PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFGLTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY------SKKCALL 235
            FSATM  E+++++  FL NP+R+EV   +S +ETI    V             K+  L 
Sbjct: 183 FFSATMAPEIERITNTFLSNPERVEVARQASASETIAQHVVVFRPSRKDREGSEKRAVLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +    +  +NGIIFCN+K +V  +  S++K G+    IHG++DQ +RM+ L  F++GT
Sbjct: 243 AMIESEGENCRNGIIFCNRKVDVDVVAKSMKKNGYDAAPIHGDLDQSTRMRTLDGFRDGT 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VASD+AARGLDIP+V HVFN+DVP+ AE+Y+HRIGRTGRAGR G+A  +    D K
Sbjct: 303 LRFLVASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGREGRAMMISVPRDDK 362

Query: 356 HIDAIEKLIEKKVDWLN-------GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           +++AIE+LI+ ++  ++          +      E          R+  P    +   ++
Sbjct: 363 NLEAIERLIQTEIPRMDNPAKVGAAPNAPEPAAEEAKPARTRTRTRREKPAAAPAETVEQ 422

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPK 456
            +    +       K   +    ++   E +A+ +G   +MP+F+   
Sbjct: 423 PQPQTPAAAEESRGKSRSRPRGGERRKGEREAEVVGMGDDMPSFIALS 470


>gi|75675849|ref|YP_318270.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
 gi|74420719|gb|ABA04918.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
          Length = 483

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 240/483 (49%), Positives = 317/483 (65%), Gaps = 24/483 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS KV+ AV  AGY  PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MSFSHLGLSDKVLAAVAAAGYTSPTPIQDQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV + F+KYG    L VALLIGG+ F  Q+ KL 
Sbjct: 61  TLLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG LL+  +E+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM +E+++V++ FL NP++IEV+ P++TA T+    V+   +  +K  LL++LL+
Sbjct: 181 LFFTATMPNEIRRVTDTFLHNPEKIEVSRPATTAATVAQSQVSCSREPHEKRELLRRLLR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +KN IIFCN+K++V  +C SL+K GFS  A+HG++DQ +R   L  F++G + L+V
Sbjct: 241 EAKELKNAIIFCNRKRDVAIVCKSLQKHGFSAGALHGDMDQSARTASLDQFRKGELPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HV NFDVP   ++Y+HRIGRTGRAGR G A T+V   D K + AI
Sbjct: 301 ASDVAARGLDIPEVSHVLNFDVPYHPDDYVHRIGRTGRAGRTGTAITIVCPADFKSLAAI 360

Query: 361 EKLIEKKVDW--LNGDLSSLNPPLEK------------------IDIAQHNHAR---KNN 397
           EKL  + +    L G  +S N  + +                   D    ++AR   + +
Sbjct: 361 EKLTGQAIPQADLPGHDASANEAVVEAGAPAAAAAGRSSRSRSAPDKGGESYARGGKRES 420

Query: 398 PIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
             P++S G  +R +  +   +         I +     +E  ++  G   ++PAF+L   
Sbjct: 421 RKPRRSGGDHQRHEAPAVTAAASKAAPPPSIGRTLAPRREAVSEP-GDHSHLPAFLLRPI 479

Query: 458 RGK 460
           R +
Sbjct: 480 RAR 482


>gi|154248677|ref|YP_001419635.1| DEAD/DEAH box helicase domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154162762|gb|ABS69978.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus
           Py2]
          Length = 537

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 229/380 (60%), Positives = 287/380 (75%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS KV+ AV D GY +PTPIQ + IP VL R DV G+AQTGTGKTA+F LPML
Sbjct: 1   MSFSELGLSEKVLAAVADTGYTQPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LE GRAR RMPRTLILEPTRELAAQV +NF +YGKN+ L VALLIGG+ F  Q+ KL 
Sbjct: 61  TLLEHGRARARMPRTLILEPTRELAAQVEENFTRYGKNHKLNVALLIGGVSFGDQDSKLL 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG+LL++ IE+LVIDEADRMLDMGFIP I+ +  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERVCKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+Q++   FL NP R+EV+ P+STA T+ H  VA+  +   K  +L++L++
Sbjct: 181 LFFSATMPPEIQRLVSQFLSNPVRVEVSKPASTAATVTHMLVASGREDYDKREVLRELIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D ++NGIIFCN+K++V  L  SL+K GF+  A+HG++DQ +R+K L  F+ G   L+V
Sbjct: 241 NCDGLQNGIIFCNRKRDVAVLHRSLQKHGFNAVALHGDMDQHARIKALDQFRSGEATLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP V HVFN+DVP+ +E+Y+HR+GRTGRAGR G A+TLV   D K + AI
Sbjct: 301 ASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRVGRTGRAGRAGTAYTLVTHTDAKSVTAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNP 380
           EKLI   V W    L    P
Sbjct: 361 EKLIGNAVPWHGAPLGDAPP 380


>gi|58038579|ref|YP_190543.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58000993|gb|AAW59887.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 793

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 202/483 (41%), Positives = 276/483 (57%), Gaps = 26/483 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  ++ A+ + GY  PTPIQ + IP VL+ HDV G+AQTGTGKTASF LPML  
Sbjct: 293 FADLGLSEPIMRAIEELGYEHPTPIQAQAIPEVLKGHDVLGVAQTGTGKTASFTLPMLQK 352

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   RAR RMPR+LILEPTRELA QVA+NF+ YGK   LT ALLIGG     Q   L RG
Sbjct: 353 LAGSRARARMPRSLILEPTRELALQVAENFKLYGKYLRLTHALLIGGESMAEQRDVLNRG 412

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LD F RG LL+     LVIDEADRMLDMGFIP I+ I +L+P  RQTL 
Sbjct: 413 VDVLIATPGRLLDLFGRGGLLLTQTSTLVIDEADRMLDMGFIPDIEKIVALLPAHRQTLF 472

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++++++ FL++P  I V+     +        A       +     + L  +
Sbjct: 473 FSATMAPEIRRLADAFLRHPVEITVSR---QSSVATTIEEALVIVPEDEKRRTLKKLLRR 529

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           + +++ I+FCN+K++V  +   L K       +HG++ Q  R   L  F+ G ++ +V S
Sbjct: 530 ENVQSAIVFCNRKRDVDMIQQYLTKHDIEAGHLHGDLAQSLRFSTLERFRSGELKFLVCS 589

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HVFN+D+P  AE+Y+HRIGRTGRAG  G AF+L    D + ++AIE 
Sbjct: 590 DVAARGIDIGGLSHVFNYDLPFNAEDYVHRIGRTGRAGNEGHAFSLATPRDRRLLEAIET 649

Query: 363 LIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           L  K +    L G  +    P E               + ++     R+++    +++  
Sbjct: 650 LTGKVIARPVLEGITTVDWAPEEGERRPAETATPAPQDVAEEGEQRPRKRRRGGRKRNRG 709

Query: 421 PLKESEKISKL----------------QQDIQ-----ENDADSLGFRGNMPAFMLPKNRG 459
              ESE + ++                 + ++     END    GF G+ PAFML   R 
Sbjct: 710 DRDESETVQQVAPTAVASVAVIEAPVSHRSVELAPAFENDGPKTGFGGDTPAFMLVPRRR 769

Query: 460 KLN 462
           K+ 
Sbjct: 770 KVT 772


>gi|148255365|ref|YP_001239950.1| putative ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1]
 gi|146407538|gb|ABQ36044.1| Putative ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1]
          Length = 478

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 239/479 (49%), Positives = 313/479 (65%), Gaps = 18/479 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS KV+ AV   GY  PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MSFSNLGLSDKVLAAVAATGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           TILEKGRAR RMPRTLILEPTRELAAQV +NF++YG    L VALLIGG+ F  Q+ KL 
Sbjct: 61  TILEKGRARARMPRTLILEPTRELAAQVKENFDRYGAGQKLNVALLIGGVSFGDQDTKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG LL+  +E+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM  E+++V+E FL NP+++EV+ P++TA T+    V    +  +K  +L++LL+
Sbjct: 181 LFFTATMPPEIRRVTETFLHNPQKVEVSRPATTAVTVTQLQVPGGREAHQKREVLRKLLR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +KN IIFCN+K++V  L  SL+K GFSVCA+HG++DQ +RM  L  F++G + L+V
Sbjct: 241 EAKDLKNAIIFCNRKRDVAILHKSLQKHGFSVCALHGDMDQSARMAALDQFRKGELPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HVFNFDVP+ +++Y+HRIGRTGRAGR G A ++V+  D K I AI
Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHSDDYVHRIGRTGRAGRTGTAISIVSPADQKSITAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE------KIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           EKLI + +    GD        E        D A+ +  +       +     R      
Sbjct: 361 EKLIGQSIPKAEGDYEVAASADEDSHERRPRDGARRSRGKAPREREPREIRETRPSAAAP 420

Query: 415 SQKSHI-----------PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
                            P +  +   + ++  +++D +      ++PAF+L   R  L 
Sbjct: 421 RPAQAATPRPAPSPRNDPARTEQPRHEPRRPRRDHDNEP-ADHSHLPAFLLRPVRAPLP 478


>gi|254462976|ref|ZP_05076392.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
           HTCC2083]
 gi|206679565|gb|EDZ44052.1| ATP-dependent RNA helicase RhlE [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 495

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 220/487 (45%), Positives = 299/487 (61%), Gaps = 33/487 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L PKV+ A+ DAGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T
Sbjct: 3   KFSDLNLDPKVLKAIDDAGYESPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFTLPMIT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
           +L KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K +   + ALLIGG+ F+ Q++ ++
Sbjct: 63  MLGKGRARARMPRSLVLCPTRELAAQVAENFDTYTKYHKKLSKALLIGGVSFKEQDRLID 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR+LDH  RGKLL+  ++++V+DEADRMLDMGFIP I+ I  L PFTRQT
Sbjct: 123 KGVDVLIATPGRLLDHVERGKLLLTGVQVMVVDEADRMLDMGFIPDIERIFGLTPFTRQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT------YAQYSKKCAL 234
           L FSATM  E+++++  FL NP R+EV   ++ +E IE   +             K+ AL
Sbjct: 183 LFFSATMAPEIERITNTFLSNPARVEVARQATASENIEQVVMMFKGSRKDREGTEKRKAL 242

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            + +    D   N IIFCN+K +V  +  SL+K G+    IHG++DQ  R K L  F+EG
Sbjct: 243 RKLIDAEGDACTNAIIFCNRKMDVDVVAKSLKKYGYDAAPIHGDLDQSQRTKTLDGFREG 302

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            ++ +VASD+AARGLD+P V HVFNFDVP+ AE+Y+HRIGRTGRAGR GKA  +    D 
Sbjct: 303 GLRFLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGKAVMICVPRDE 362

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           K+ DAIEKLI+K++  ++  L   + P    +      +      P+++    R K    
Sbjct: 363 KNFDAIEKLIQKQITRIDNPLKPADAP-APSEARADGASPAREDKPKRTRARSRNKPKDD 421

Query: 415 SQKSHI------------PLKESEKISKLQQDIQEND-------------ADSLGFRGNM 449
           S K+ +            P K   K    +Q  +EN+              + +G   ++
Sbjct: 422 SPKTEVQADAPVVAAEVEPAKAEPKPEAPKQAPRENNTLSRSNRGRGGGNNNVVGLGDHL 481

Query: 450 PAFMLPK 456
           P F+   
Sbjct: 482 PGFIAMS 488


>gi|296282684|ref|ZP_06860682.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354]
          Length = 472

 Score =  206 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 214/449 (47%), Positives = 282/449 (62%), Gaps = 5/449 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS K++ AV  AGY +PTPIQ + IP VL   D+ GIAQTGTGKTASFVLPM+
Sbjct: 1   MKFADLGLSDKLLQAVEAAGYTEPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  GR R  MPR+LIL PTRELAAQVA+NFEKYGK ++L +ALLIGG+    Q K L 
Sbjct: 61  DILASGRRRALMPRSLILAPTRELAAQVAENFEKYGKQHDLQLALLIGGVQMGDQVKALN 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR++D F RGK+L+N  E+LVIDEADRMLDMGFIP I+ I S +P  RQT
Sbjct: 121 EGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIETICSKLPEPRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++ FL NPKRIEV+  +ST E I           +++     + L 
Sbjct: 181 LLFSATMPPPIEKLAQKFLTNPKRIEVSRAASTNENI---TAFKIPVKAREKRETLRWLL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D ++  IIF N+K  V  +  SL+  GF+   IHG++DQ SR+  L+ FK G + ++V
Sbjct: 238 ANDHVETAIIFANRKTTVREINKSLQSHGFASGEIHGDMDQSSRIAELNRFKAGEVNILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDI  V HVFNFD P   ++Y+HRIGRTGRAG  G+AFT V  +D + I  +
Sbjct: 298 ASDVAARGLDIKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFTFVTDDDAEAIANV 357

Query: 361 EKLIEKKVDWLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           EKL E K+     +     L     K +  +     +    P++    + RK   + ++ 
Sbjct: 358 EKLTESKIKPFGKEDVRVELVEAEPKRESGRKRSDERKADAPERDDDRESRKAKPARERK 417

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRG 447
               +     ++  +  +     S G RG
Sbjct: 418 PRRDESQRDEARPGRSAENRSPRSQGGRG 446


>gi|304391684|ref|ZP_07373626.1| probable ATP-dependent RNA helicase Exp9 [Ahrensia sp. R2A130]
 gi|303295913|gb|EFL90271.1| probable ATP-dependent RNA helicase Exp9 [Ahrensia sp. R2A130]
          Length = 532

 Score =  206 bits (522), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 232/480 (48%), Positives = 305/480 (63%), Gaps = 17/480 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGLSPKV+ AV  +GY +PTPIQ + IP VL R DV GIAQTGTGKTA+F LPM+
Sbjct: 1   MKFSDLGLSPKVLAAVEASGYTEPTPIQAQAIPEVLNRRDVMGIAQTGTGKTAAFTLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++ EKGRAR RMPRTLILEPTRELAAQV  NFEKY  N+ L VALLIGG   E Q K L+
Sbjct: 61  SLSEKGRARARMPRTLILEPTRELAAQVEQNFEKYAVNHKLNVALLIGGTSMEKQMKILD 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGADVLI TPGR+LD F RG++LMN +EILVIDEADRMLDMGFIP I+ I  +VPFTRQT
Sbjct: 121 RGADVLIATPGRLLDLFERGRILMNGVEILVIDEADRMLDMGFIPDIERIVKMVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   ++K+++ FLQNP ++ V   ++TA+T+E   V    +  +K A L+ ++ 
Sbjct: 181 LFFSATMPPIIEKLADQFLQNPVQVMVAAAATTAKTVEQKLVKAPKKDFEKRAKLRDVID 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQD +KN IIFCN+K +V  L  S+ K+G+SV ++HG++DQ +RMK L+ F++  I  +V
Sbjct: 241 SQDNIKNAIIFCNRKVDVATLHRSMTKRGYSVGSLHGDMDQSARMKTLAAFRDNEITHLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFN+DVP   ++Y+HRIGR GRAGR G AFT V   D ++I A+
Sbjct: 301 ASDVAARGLDIPDVSHVFNYDVPIHPDDYVHRIGRCGRAGRDGWAFTFVTPADDRYIKAV 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK--- 417
             L   ++++L G               +    R+  P    S    +R +         
Sbjct: 361 MALTGDEIEYL-GRAPIAKADDADEADDKPKRGRRAAPKSDDSGEAPKRARRSKRAAPAE 419

Query: 418 -----------SHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFML--PKNRGKLNDK 464
                           K   + S+   + +    ++       PA     PK   + +D+
Sbjct: 420 DEAAPEAETDGEERSTKRPRRTSRRAPEQETKVEEAAPVAAKEPAERQERPKREPRRDDR 479


>gi|294083671|ref|YP_003550428.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663243|gb|ADE38344.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 464

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 223/467 (47%), Positives = 310/467 (66%), Gaps = 15/467 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGLS ++  AV + GY  PTPIQ K+IP++L   D+ G AQTGTGKTASF LPM+
Sbjct: 1   MKFSDLGLSDELSQAVAELGYESPTPIQEKSIPIILMGRDILGSAQTGTGKTASFTLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  GRA+ RMPR+LIL PTRELAAQVA++FEK+  ++ L +ALLIGG+ F  QN  L+
Sbjct: 61  DILASGRAKARMPRSLILAPTRELAAQVAESFEKFSTHHKLNMALLIGGVSFSDQNTALD 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR+LDHF RGK+++N++++LVIDEADRMLDMGFIP ++ I SL+P  RQT
Sbjct: 121 KGVDVLIATPGRLLDHFERGKVMLNDVKVLVIDEADRMLDMGFIPDVERIVSLLPPLRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT++D++ K+S  F+ NPK IEV  P+STA+T+      T     K    + + L 
Sbjct: 181 LFFSATLSDDIHKISHKFVSNPKIIEVAPPASTADTVAQHLQWTDV---KSKRAVLRDLL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +T+KN +IFCN+K+++  L  SL K  FS  A+HG++ Q +R++ L  FK+G + L++
Sbjct: 238 RVETVKNAVIFCNRKRDISTLVKSLTKHEFSAVAMHGDMTQSARLEALDKFKKGEVPLLI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDA 359
           ASD+AARGLDI  + HVFNFDVP  AE+Y+HRIGRTGRAG+ G+AFT+ A K+D ++I A
Sbjct: 298 ASDVAARGLDIAGLSHVFNFDVPMNAEDYVHRIGRTGRAGKSGRAFTIAAGKDDKRYISA 357

Query: 360 IEKLIEKKVDWLN--GDLSSLNPPLEKIDIAQHNHARKNNPIPQK----STGFDRRKKNY 413
           IE LI K +  +   GD +S        D  +    R   P  ++    ST  D++  + 
Sbjct: 358 IESLIGKTIPLVGDAGDDASETKTSTAKDTDKKPAGRGKKPAAKEADKVSTKADKKPASS 417

Query: 414 SSQKSHIPLKESEK-ISKLQQDIQENDADSLG----FRGNMPAFMLP 455
           +  K H   +  +K  +   +D   +  D  G      G++PAF+  
Sbjct: 418 TKPKDHNTKEPRQKNRNGNTKDELPSPPDCQGDTLEATGHIPAFLRR 464


>gi|154253690|ref|YP_001414514.1| DEAD/DEAH box helicase domain-containing protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154157640|gb|ABS64857.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 504

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 233/487 (47%), Positives = 310/487 (63%), Gaps = 37/487 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+P+V+ AV + GY +PTPIQ + IP VL   DV GIAQTGTGKTASF LPM+
Sbjct: 1   MTFDELGLAPEVLKAVSETGYTEPTPIQAQAIPHVLAGRDVLGIAQTGTGKTASFTLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +GRAR RMPR+LILEPTRELAAQVA+NFE YGK   L++ALLIGG+ F  Q KKL+
Sbjct: 61  DKLSRGRARARMPRSLILEPTRELAAQVAENFETYGKYNKLSMALLIGGVSFGDQEKKLD 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH NRGK+L+  ++ILVIDEADRMLDMGFIP I+ I   +PFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHCNRGKVLLTGVQILVIDEADRMLDMGFIPDIEEICKKLPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+Q++++ FL NP+RIEV   SST+  I+   + T     +      Q + 
Sbjct: 181 LFFSATMPPEIQRLTDTFLHNPERIEVARASSTSANIKQVLLKTTRDGKRDV---LQRMI 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D +KN IIFCN+K++V  L  +L K G S  AIHG++DQ +R + L  F+ GTI+L+V
Sbjct: 238 EEDNVKNAIIFCNRKRDVSVLERALSKSGLSAGAIHGDLDQSTRTRTLDGFRNGTIRLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFN+DVP+ AE+Y+HRIGRTGRAG+ G A TL  +ED K++ AI
Sbjct: 298 ASDVAARGLDIPDVSHVFNYDVPSHAEDYVHRIGRTGRAGKSGTAVTLSTREDGKYLAAI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE-------------KIDIAQHNHARKNNPIPQKSTGFD 407
           EKLI   +   +GD+     P E             ++ + +    +++          D
Sbjct: 358 EKLIGNPIP--SGDVDVPAAPAEADASPAVAAEASTEMSVDEPKEEKRSRGRRGGRGRKD 415

Query: 408 RRKK----NYSSQKSHIPLKESEKISKLQQDIQENDA---------------DSLGFRGN 448
           +       N ++      ++ +E+        +E  A                 +G   +
Sbjct: 416 KADSVETVNAAAPAEPAVVQSAERARPEPAKAEERPARRERGGRDRDRDDDRPVVGLGDH 475

Query: 449 MPAFMLP 455
           +PAF+L 
Sbjct: 476 VPAFILR 482


>gi|83953889|ref|ZP_00962610.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. NAS-14.1]
 gi|83841834|gb|EAP81003.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. NAS-14.1]
          Length = 554

 Score =  205 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 207/469 (44%), Positives = 291/469 (62%), Gaps = 21/469 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T
Sbjct: 23  KFSDLNLNPKVLKAINEAGYETPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPMIT 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F  Q+K +++
Sbjct: 83  LLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFGEQDKLIDK 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR++DHF RGKL++++++I+V+DEADRMLDMGFIP I+ I  + PFTRQTL
Sbjct: 143 GVDVLIATPGRLIDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFQMTPFTRQTL 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET------IEHCFVATYAQYSKKCALL 235
            FSATM  E+++++  FL  P+RIEV   ++T+E       +            K+  L 
Sbjct: 203 FFSATMAPEIERITNTFLSAPERIEVARQATTSENIEQGVLMFKASRKDREATEKRKVLR 262

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +    D   N IIFCN+K +V  +  SL+K G+    IHG++DQ  R K L  F+ G 
Sbjct: 263 ALIDAEGDKCTNAIIFCNRKMDVDTVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFRNGD 322

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VASD+AARGLD+P V HV+N+DVP+ AE+Y+HRIGRTGRAGR GKA  +    D K
Sbjct: 323 LRFLVASDVAARGLDVPSVSHVYNYDVPSHAEDYVHRIGRTGRAGRDGKAIMICVPRDEK 382

Query: 356 HIDAIEKLIEKKVDWLNGDL-------------SSLNPPLEKIDIAQHNHARKNNPIPQK 402
           +++ +E+L+++++  L+  L              + + P  K D A  +   K      +
Sbjct: 383 NLEDVERLVQREIPRLDNPLGGSEAKAAPAAEAKTADAPAAKSDEAAKSEKPKRTR--TR 440

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
           S       K  + Q         +      +   ++DA     + + PA
Sbjct: 441 SRKKPDAAKADADQTETAQADSPKADKPDAKADAKSDAKPQDKKSDKPA 489


>gi|27379459|ref|NP_770988.1| ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA 110]
 gi|27352611|dbj|BAC49613.1| ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA 110]
          Length = 500

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 233/473 (49%), Positives = 307/473 (64%), Gaps = 13/473 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS KV+ AV   GY  PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MSFSNLGLSEKVLAAVAATGYTTPTPIQEQAIPHVLARKDVLGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           TILEKGRAR RMPRTLILEPTRELAAQV +NF++YG    L VALLIGG+ F  Q+ KL 
Sbjct: 61  TILEKGRARARMPRTLILEPTRELAAQVKENFDRYGAGQKLNVALLIGGVSFGDQDAKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG LL+  +E+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM  E+++++E FL NP+++EV+ P++TA T+    V    +  +K  LL++LL+
Sbjct: 181 LFFTATMPPEIRRITETFLHNPQKVEVSKPATTAVTVTQSQVPAGKKAHEKRELLRRLLR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +KN IIFCN+K+ V  +  SL+K GFSV A+HG++DQ +RM  L  F++G + L+V
Sbjct: 241 EAKDLKNAIIFCNRKREVAIVHKSLQKHGFSVGALHGDMDQPARMAALEQFRKGELPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HVFNFDVP+  ++Y+HR+GRTGRAGR G A ++V   D K + AI
Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRVGRTGRAGRSGTAISIVTPLDQKSMVAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN----HARKNNPIPQKSTGFDRRKKNYSSQ 416
           EKLI + +    GD        +  D  +       +R     PQ+    +R  +   ++
Sbjct: 361 EKLIGQSIPRAEGDYEVHAEAGDATDRPREQRGRERSRGGRGKPQRGRDRERSHEPREAR 420

Query: 417 KSHIPLKESEKISKLQQDI---------QENDADSLGFRGNMPAFMLPKNRGK 460
            S       E     +              + +       ++P+   P+ R +
Sbjct: 421 PSAEARPAPEARPAREPRPPREARPSPEPRHGSRPQANASHVPSIGRPEPRRQ 473


>gi|241762057|ref|ZP_04760141.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373523|gb|EER63110.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 506

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 213/442 (48%), Positives = 288/442 (65%), Gaps = 11/442 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS +++ AV + GY +PTP+Q   IP VL   D+  +AQTGTGKTASFVLPM+
Sbjct: 15  MSFADLGLSKELLQAVAELGYEEPTPVQATAIPSVLMMRDLIAVAQTGTGKTASFVLPMI 74

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  GR R RMPR+LILEPTRELAAQVA+NFEKYGK + L+++LLIGG+P   Q   LE
Sbjct: 75  DILAHGRCRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALE 134

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR+LD F RGK+L+++ E+LVIDEADRMLDMGFIP I+ I + +P +RQT
Sbjct: 135 KGVDVLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQT 194

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++ FL NPK+IE++ P++    I+   +    +  KK       + 
Sbjct: 195 LLFSATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPRSKKKKLCD---ML 251

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIFCN+K  V  L  +LE+QGFSV  IHG++ Q  R   L  FK G I ++V
Sbjct: 252 RAEKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLV 311

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLD+  + HVFNFDVP   ++YIHRIGRTGR G  G+A T V   D + I AI
Sbjct: 312 ASDIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAIAAI 371

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EKL+  ++  L     + +P   +  ++     ++  P  +KS     RK   + +K+  
Sbjct: 372 EKLMGVEIPRLGNRKKNAHPSKSEEAVS----PKQAKPAQEKSAAPSPRK---APRKAET 424

Query: 421 PLKESE-KISKLQQDIQENDAD 441
           P K  E ++  ++ D  +N A 
Sbjct: 425 PKKSPEDRLDSVESDFPKNQAP 446


>gi|260752364|ref|YP_003225257.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258551727|gb|ACV74673.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 506

 Score =  204 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 213/442 (48%), Positives = 288/442 (65%), Gaps = 11/442 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS +++ AV + GY +PTP+Q   IP VL   D+  +AQTGTGKTASFVLPM+
Sbjct: 15  MSFADLGLSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMI 74

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  GR R RMPR+LILEPTRELAAQVA+NFEKYGK + L+++LLIGG+P   Q   LE
Sbjct: 75  DILAHGRCRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALE 134

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR+LD F RGK+L+++ E+LVIDEADRMLDMGFIP I+ I + +P +RQT
Sbjct: 135 KGVDVLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQT 194

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++ FL NPK+IE++ P++    I+   +    +  KK       + 
Sbjct: 195 LLFSATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPRSKKKKLCD---ML 251

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIFCN+K  V  L  +LE+QGFSV  IHG++ Q  R   L  FK G I ++V
Sbjct: 252 RAEKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLV 311

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLD+  + HVFNFDVP   ++YIHRIGRTGR G  G+A T V   D + I AI
Sbjct: 312 ASDIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAITAI 371

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EKL+  ++  L     +  P   +  ++     ++  P+ +KS     RK   + +K+  
Sbjct: 372 EKLMGVEIPRLGNRKKNAYPSKSEETVS----PKQAKPVQEKSAASSPRK---APRKTET 424

Query: 421 PLKESE-KISKLQQDIQENDAD 441
           P K  E ++  ++ D  +N A 
Sbjct: 425 PKKLPEDRLDSVESDFPKNQAP 446


>gi|83942648|ref|ZP_00955109.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. EE-36]
 gi|83846741|gb|EAP84617.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. EE-36]
          Length = 559

 Score =  204 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 207/469 (44%), Positives = 291/469 (62%), Gaps = 21/469 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T
Sbjct: 23  KFSDLNLNPKVLKAIDEAGYETPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPMIT 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F  Q+K +++
Sbjct: 83  LLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFGEQDKLIDK 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR++DHF RGKL++++++I+V+DEADRMLDMGFIP I+ I  + PFTRQTL
Sbjct: 143 GVDVLIATPGRLIDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFQMTPFTRQTL 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET------IEHCFVATYAQYSKKCALL 235
            FSATM  E+++++  FL  P+RIEV   ++T+E       +            K+  L 
Sbjct: 203 FFSATMAPEIERITNTFLSAPERIEVARQATTSENIEQGVLMFKASRKDREATEKRKVLR 262

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +    D   N IIFCN+K +V  +  SL+K G+    IHG++DQ  R K L  F+ G 
Sbjct: 263 ALIDAEGDKCTNAIIFCNRKMDVDTVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFRNGD 322

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VASD+AARGLD+P V HV+N+DVP+ AE+Y+HRIGRTGRAGR GKA  +    D K
Sbjct: 323 LRFLVASDVAARGLDVPSVSHVYNYDVPSHAEDYVHRIGRTGRAGRDGKAIMICVPRDEK 382

Query: 356 HIDAIEKLIEKKVDWLNGDL-------------SSLNPPLEKIDIAQHNHARKNNPIPQK 402
           +++ +E+L+++++  L+  L              + + P  K D A  +   K      +
Sbjct: 383 NLEDVERLVQREIPRLDNPLGGSEAKAAPAAEAKTADAPAAKSDDAAKSEKPKRTR--TR 440

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
           S       K  + Q         +      +   ++DA     + + PA
Sbjct: 441 SRKKPDAAKVDAEQTETAQADSPKADKSDAKADAKSDAKPQDKKSDKPA 489


>gi|115524965|ref|YP_781876.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris BisA53]
 gi|115518912|gb|ABJ06896.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           BisA53]
          Length = 517

 Score =  203 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 235/433 (54%), Positives = 298/433 (68%), Gaps = 5/433 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS KV+ AV  +GY  PTPIQ + IP V+ R DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MSFTHLGLSDKVLAAVAASGYTTPTPIQDQAIPHVMARRDVLGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV + F+KYG    L VALLIGG+ F  Q+ KL 
Sbjct: 61  TLLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDIKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG LL+  +E+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM  E+++++E FL NP +IEV+ P+STA T+    VA   +  +K   L+QLL+
Sbjct: 181 LFFTATMPTEIRRITEAFLHNPVKIEVSKPASTAVTVTQSQVAAGREPHQKRETLRQLLR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               ++N IIFCN+K+ V  L  SL K GFSV A+HG++DQ +R   L  F++G + L+V
Sbjct: 241 EASDLQNAIIFCNRKREVALLAKSLLKHGFSVGALHGDMDQSARTAALEAFRKGELPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HVFNFDVP+  ++Y+HRIGRTGRAGR G A TLVA  D K + AI
Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRAGTAVTLVAPPDGKSVAAI 360

Query: 361 EKLIEKKVDWLN-GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           EKLI +++  +  GD     PP  +++  +   AR+     +      R +      ++ 
Sbjct: 361 EKLIGQEIPRVQLGD----APPETEVEGEREAPARRGRGSRKSGESRPRTEGRAPRAEAR 416

Query: 420 IPLKESEKISKLQ 432
            P  ES    + +
Sbjct: 417 TPRGESRPRQEAR 429


>gi|85708956|ref|ZP_01040022.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
 gi|85690490|gb|EAQ30493.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
          Length = 497

 Score =  203 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 218/460 (47%), Positives = 289/460 (62%), Gaps = 10/460 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLSP+++ AV DAGY +PT IQ + IP VL   D+ GIAQTGTGKTASFVLPM+
Sbjct: 36  MTFADLGLSPELLKAVEDAGYTEPTAIQAEAIPAVLMMKDLIGIAQTGTGKTASFVLPMI 95

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ++  GR R  MPR+LILEPTRELAAQVA+NFEKYG N++L +ALLIGG+    Q K L+
Sbjct: 96  DVMAAGRRRALMPRSLILEPTRELAAQVAENFEKYGANHDLKMALLIGGVQMGDQLKTLD 155

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR++D F RGK+L+N  E+LVIDEADRMLDMGFIP I+ I   +P TRQT
Sbjct: 156 EGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIEFICDKLPETRQT 215

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++K+++ FL NPKRIE    ++T + I           +++     + L 
Sbjct: 216 MLFSATMPAPIEKLAKKFLSNPKRIETTRAATTNKDI---TAFKVPVKARQKRDTLEWLL 272

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D ++  IIF N+K  V  L   L++QGF+   IHG++DQ SR+K L  FK G + ++V
Sbjct: 273 ANDQVETAIIFANRKTTVRELNKHLQRQGFASGEIHGDMDQSSRLKELDRFKSGDVNILV 332

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDI  V HVFNFD P   ++Y+HRIGRTGRAG  G+AFTLVA ED + I  +
Sbjct: 333 ASDVAARGLDIKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFTLVADEDAEAIANV 392

Query: 361 EKLIEKKVDWL-NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF-----DRRKKNYS 414
           EKL   K+      D+          +    + A+   P  +KS        D       
Sbjct: 393 EKLTGAKIKVFGKEDVRVELADGSAKNTGSDDEAKDEKPAEKKSRSRSRKRDDEGDAPRK 452

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLG-FRGNMPAFM 453
            ++     K + K    ++D + +D    G + G  P F+
Sbjct: 453 PRRESAEDKPARKSRPRRRDDESDDPVPAGEWNGPKPGFL 492


>gi|283856424|ref|YP_162949.2| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|283775425|gb|AAV89838.2| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 506

 Score =  202 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 213/442 (48%), Positives = 287/442 (64%), Gaps = 11/442 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS +++ AV + GY +PTP+Q   IP VL   D+  +AQTGTGKTASFVLPM+
Sbjct: 15  MSFADLGLSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMI 74

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  GR R RMPR+LILEPTRELAAQVA+NFEKYGK + L+++LLIGG+P   Q   LE
Sbjct: 75  DILAHGRCRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALE 134

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR+LD F RGK+L+++ E+LVIDEADRMLDMGFIP I+ I + +P +RQT
Sbjct: 135 KGVDVLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQT 194

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++ FL NPK+IE++ P++    I+   +    +  KK       + 
Sbjct: 195 LLFSATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPRSKKKKLCD---ML 251

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIFCN+K  V  L  +LE+QGFSV  IHG++ Q  R   L  FK G I ++V
Sbjct: 252 RAEKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLV 311

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLD+  + HVFNFDVP   ++YIHRIGRTGR G  G+A T V   D + I AI
Sbjct: 312 ASDIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAITAI 371

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EKL+  ++  L     +  P   +  ++     ++  P  +KS     RK   + +K+  
Sbjct: 372 EKLMGVEIPRLGNRKKNTYPSKSEETVS----PKQAKPAQEKSATPSPRK---APRKTET 424

Query: 421 PLKESE-KISKLQQDIQENDAD 441
           P K  E ++  ++ D  +N A 
Sbjct: 425 PKKLPEDRLDSVESDFPKNQAP 446


>gi|163732038|ref|ZP_02139484.1| ATP-dependent RNA helicase, putative [Roseobacter litoralis Och
           149]
 gi|161394336|gb|EDQ18659.1| ATP-dependent RNA helicase, putative [Roseobacter litoralis Och
           149]
          Length = 504

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 203/413 (49%), Positives = 279/413 (67%), Gaps = 10/413 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++L L+PKV+ A+ +AGY  PTPIQ   IP  L   DV GIAQTGTGKTASF LPM+
Sbjct: 22  IKFSELNLNPKVLKAIDEAGYETPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMI 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+K ++
Sbjct: 82  TLLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDKLID 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQT
Sbjct: 142 KGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI------EHCFVATYAQYSKKCAL 234
           L FSATM  E+++++  FL  P+R+EV   ++ +ETI                  K+  L
Sbjct: 202 LFFSATMAPEIERITNTFLSAPERVEVARQATASETIEQGVLKFKASRKDREGTEKRKLL 261

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
              +    +   N IIFCN+K +V  +  SL+K  +    IHG++DQ  R + L  F++G
Sbjct: 262 RALIDAEGEKCTNAIIFCNRKTDVDIVAKSLKKYNYDAAPIHGDLDQSQRTRTLDGFRDG 321

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           +++ ++ASD+AARGLD+P V HVFNFDVP  AE+Y+HRIGRTGRAGR GKA  +    D 
Sbjct: 322 SLKFLIASDVAARGLDVPAVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAIMICVPRDE 381

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ----HNHARKNNPIPQKS 403
           ++++ IE+L+++++  L+  L +   P EK   ++        R     P+KS
Sbjct: 382 RNLEDIERLVQREIPRLDNPLGTPAEPEEKTTASEPAVTEKPKRTRTRAPRKS 434


>gi|146340507|ref|YP_001205555.1| putative ATP-dependent RNA helicase [Bradyrhizobium sp. ORS278]
 gi|146193313|emb|CAL77329.1| Putative ATP-dependent RNA helicase [Bradyrhizobium sp. ORS278]
          Length = 476

 Score =  202 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 222/376 (59%), Positives = 286/376 (76%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS KV+ AV   GY  PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MSFSNLGLSDKVLAAVAATGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           TILEKGRAR RMPRTLILEPTRELAAQV +NF++YG    L VALLIGG+ F  Q+ KL 
Sbjct: 61  TILEKGRARARMPRTLILEPTRELAAQVKENFDRYGAGQKLNVALLIGGVSFGDQDAKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG LL+  +E+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM  E++++++ FL NP+++EV+ P++TA T+    V +  +  +K  +L++LL+
Sbjct: 181 LFFTATMPPEIRRITDAFLHNPQKVEVSKPATTAVTVTQLQVPSGREAHQKREVLRRLLR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +KN IIFCN+K++V  +  SL+K GFSV A+HG++DQ +RM  L  F++G + L+V
Sbjct: 241 EAKDLKNAIIFCNRKRDVAIVHKSLQKHGFSVGALHGDMDQSARMAALDQFRKGELPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HVFNFDVP+ +++Y+HRIGRTGRAGR G A ++V+  D K + AI
Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHSDDYVHRIGRTGRAGRTGTAISIVSPPDQKSVAAI 360

Query: 361 EKLIEKKVDWLNGDLS 376
           EKLI + +  + GD  
Sbjct: 361 EKLIGQSIPTIEGDYE 376


>gi|83594050|ref|YP_427802.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
 gi|83576964|gb|ABC23515.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
          Length = 799

 Score =  202 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 204/438 (46%), Positives = 281/438 (64%), Gaps = 5/438 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLSP+ + A+ + GY  PTPIQ++ IP V    DV GIAQTGTGKTASF LPM+
Sbjct: 1   MTFADLGLSPETLRAIEEVGYTTPTPIQVQAIPYVQMGRDVLGIAQTGTGKTASFTLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  G+A+ RMPR+LIL PTRELA QV++NF  YGK   L++ALLIGG     Q K L+
Sbjct: 61  DILASGKAKARMPRSLILAPTRELATQVSENFTLYGKYQKLSMALLIGGESMNEQQKVLD 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR++D F RG +L+ ++++LVIDEADRMLDMGFIP ++ I +L+P  RQT
Sbjct: 121 RGVDVLIATPGRLIDLFERGSILLRDVKVLVIDEADRMLDMGFIPDVERIVALLPKIRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++++++ FL NPK + +      AET+E   +   A   ++     + L 
Sbjct: 181 LFFSATMDKEIRRLADAFLMNPKEVRIEPTQKVAETVEQALIMVKASEKREA---LRQLL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++T+ N  IFCN+K++V  L  SL   GF + A+HG++ Q  R + L  FK   +QLMV
Sbjct: 238 RRETVTNAFIFCNRKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKRAEVQLMV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SD+AARG+D+ +V HVFNFDVP   E+YIHRIGRTGRAGR G+A+TL   ED K++ AI
Sbjct: 298 CSDVAARGIDVTEVSHVFNFDVPTHPEDYIHRIGRTGRAGRLGRAYTLATPEDAKYLRAI 357

Query: 361 EKLIEKKVDWLNG-DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           E L+ K +      +LS +      + +A+ +   K     +   G  R  +  +  +  
Sbjct: 358 ENLLGKTIPPDPQLELSDVAVEDVALAVAEDDRRPKRGGKGRPERGARRSGRGSADAERP 417

Query: 420 IPLKESEKISKLQQDIQE 437
            PL   E+ +  Q  ++ 
Sbjct: 418 RPL-APERAANDQAPVER 434


>gi|330994043|ref|ZP_08317973.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter sp. SXCC-1]
 gi|329758989|gb|EGG75503.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter sp. SXCC-1]
          Length = 508

 Score =  202 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 215/476 (45%), Positives = 284/476 (59%), Gaps = 23/476 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGLS  +  A+ + GY  PTPIQ + IP VL   DV G+AQTGTGKTASF LPML I
Sbjct: 31  FSELGLSEPIQRAIDEMGYRHPTPIQAQAIPYVLMGRDVLGVAQTGTGKTASFTLPMLEI 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  RAR RMPR+LILEPTRELA QVA+NF  YGK+  LT ALLIGG     Q + L RG
Sbjct: 91  LQGSRARARMPRSLILEPTRELALQVAENFVNYGKHLKLTHALLIGGESMAEQKEVLNRG 150

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR++D F RG LL+   ++LVIDEADRMLDMGFIP I+ I S++   RQTL 
Sbjct: 151 VDVLIATPGRLIDLFERGGLLLTQTKLLVIDEADRMLDMGFIPDIEKIVSMLSPLRQTLF 210

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++++++ FL+NPK I V+ PSS A TIE          +K      + L  +
Sbjct: 211 FSATMAPEIRRLADAFLRNPKEITVSRPSSVASTIET---GLAIVDAKDKRRALRKLLRE 267

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             M+N I+FCN+K++V  LC SL K GFS  A+HG++ Q  R   L  FK G ++++V S
Sbjct: 268 ADMQNAIVFCNRKRDVDVLCKSLIKHGFSAGALHGDLAQSVRFSTLEAFKSGELKILVCS 327

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HVFNFD+P  AE+Y+HRIGRTGRAGR G A++L   ++     AIEK
Sbjct: 328 DIAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGRTGHAYSLATPDEEALAQAIEK 387

Query: 363 LIEKKVDWLNGD-LSSLNPPLEKIDIAQHNHARKNN-----------------PIPQKST 404
           L  K +  +    + +L    E         +RK+N                  +  +  
Sbjct: 388 LTGKPIPRIEVKGVDNLQWSDEPRSTNGRRKSRKSNADTAAAAPVTPAPTTPAAVADEPP 447

Query: 405 GFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
              RR+   ++  +       E+ + L     +      GF  +MPAFM    R K
Sbjct: 448 RRGRRQAAATAAPATSTPPRREREAGLLPAAPDQPI--TGFGEDMPAFMRLPRREK 501


>gi|163746995|ref|ZP_02154351.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161379556|gb|EDQ03969.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 529

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 209/441 (47%), Positives = 284/441 (64%), Gaps = 6/441 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L+ KV+ AV++AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPML+
Sbjct: 3   KFTDLNLNAKVLKAVVEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMLS 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+K +++
Sbjct: 63  LLARGRARARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQDKLIDK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKL++++++++V+DEADRMLDMGFIP I+ I  L PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT------YAQYSKKCALL 235
            FSATM  E+++++  FL NP+RIEV   ++T+E I    V             K+  L 
Sbjct: 183 FFSATMAPEIERITNTFLSNPERIEVARQATTSENITQGVVMFKASRKDREATEKRKLLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +    +   N IIFCN+K +V  +  SL+K G+    IHG++DQ  R K L  F+ G 
Sbjct: 243 MLIDAEGEKCTNAIIFCNRKMDVDTVAKSLKKHGYDAAPIHGDLDQSQRTKTLDGFRNGE 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ ++ASD+AARGLD+P V HVFNFDVP+ AE+Y+HRIGRTGRAGR GKA  +    D K
Sbjct: 303 LRFLIASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGKAIMICVPRDEK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           + + +E+L++K++  L   L +  P  E+        A        K      R +   +
Sbjct: 363 NFEDVERLVQKEIPRLENLLQTDAPAPEEATAEAPAKADDKPKFADKPKRTRSRSRKSDA 422

Query: 416 QKSHIPLKESEKISKLQQDIQ 436
            ++     E     K  +D Q
Sbjct: 423 PRADKAAAEQVTADKPAEDNQ 443


>gi|103486540|ref|YP_616101.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
 gi|98976617|gb|ABF52768.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
          Length = 458

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 213/455 (46%), Positives = 279/455 (61%), Gaps = 5/455 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS +++ A+ ++GY +PT IQ   IP VL   D+ GIAQTGTGKTASFVLPM+
Sbjct: 1   MKFADLGLSDELLRAIDESGYSEPTAIQAGAIPSVLMMRDMIGIAQTGTGKTASFVLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  GRAR  MPR+LILEPTRELAAQVA+NFEKYGK + L++ALLIGG+    Q K LE
Sbjct: 61  DILAHGRARALMPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLIGGVQMGDQIKALE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR++D F RGK+L+    +LVIDEADRMLDMGFIP I+NI + +P  RQT
Sbjct: 121 KGVDVLIATPGRLMDLFERGKILLTGCNLLVIDEADRMLDMGFIPDIENICTKLPANRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++ FL NPK IEV  P+S  E I            +      + L 
Sbjct: 181 LLFSATMPPPIKKLADKFLSNPKTIEVARPASRNENI---EQFVVKTSERGKRDTLRGLI 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +   I+FCN+K  V  L  SL++ G+    IHG++DQ SR+  L  FK GTI ++V
Sbjct: 238 EAEDLSTAIVFCNRKTTVRELAKSLQRSGYRAGEIHGDMDQSSRIAELDRFKAGTINILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLD+  V HVFNFD P   ++Y+HRIGRTGRAG  G+AFTLV   D + ID I
Sbjct: 298 ASDVAARGLDVKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAQGRAFTLVTPSDDEAIDNI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF--DRRKKNYSSQKS 418
           +KL    +       +   P  ++    +            +      D   K    +++
Sbjct: 358 QKLTGYNIPVHGTATADAAPAKDEPREEREPRRESRPARGGRGRAKPADPDAKRADDKRN 417

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPAFM 453
             P K+           Q++D    G+ G MP F+
Sbjct: 418 EAPRKKDAGRKPPPAARQDDDGSDDGWNGPMPGFL 452


>gi|197105174|ref|YP_002130551.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
 gi|196478594|gb|ACG78122.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
          Length = 513

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 202/375 (53%), Positives = 266/375 (70%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+DLGLSP  + AV + GY   TPIQ + IP+ LQ  DV GIAQTGTGKTA+F LPM+ 
Sbjct: 3   EFSDLGLSPATLKAVAETGYTTATPIQAEAIPMALQGRDVLGIAQTGTGKTAAFTLPMID 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L  GRA+ RMPR L++ PTRELA QV+ +FEKY     LT ALLIGG+ F+ Q +KL+R
Sbjct: 63  RLAAGRAKARMPRALVIAPTRELADQVSASFEKYAMGQKLTWALLIGGVSFKDQEQKLDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLLM  ++I+V+DEADRMLDMGFIP ++ I  L P  +QTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLMTGVQIMVVDEADRMLDMGFIPDLERIFKLTPAKKQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+ ++++ FL +P RIE + P++TAETI    V   +   K      + L  
Sbjct: 183 FFSATMPPEITRLTKQFLNDPVRIEASRPATTAETITQYLVRIPSADPKAKRTALRELIG 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  + NGI+FCN+K  V  +  SL+K GF   AIHG++DQ +RM+ L +F+ G ++L+ A
Sbjct: 243 RAEINNGIVFCNRKTEVDIVAKSLKKHGFDAAAIHGDLDQATRMRTLESFRNGELKLLCA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIP V HVFNFDVP+ A++Y+HRIGRTGRAGR G+AF +V   D K++D + 
Sbjct: 303 SDVAARGLDIPAVSHVFNFDVPHHADDYVHRIGRTGRAGRTGEAFMIVTPADSKNLDKVL 362

Query: 362 KLIEKKVDWLNGDLS 376
           KLI K  + ++ DL 
Sbjct: 363 KLIGKTPEEVSLDLD 377


>gi|86750102|ref|YP_486598.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
 gi|86573130|gb|ABD07687.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
          Length = 516

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 231/446 (51%), Positives = 303/446 (67%), Gaps = 3/446 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS KV+ AV  +GY  PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MSFNNLGLSDKVLAAVAASGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV + F+KYG    L VALLIGG+ F  Q+ KL 
Sbjct: 61  TMLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG LL+  +E+L+IDEADRMLDMGFIP I+ +  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVEMLIIDEADRMLDMGFIPDIERVCKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM  E+++V+E FL NP++IEV+ P+STA T+    VA   +  +K   L+ L++
Sbjct: 181 LFFTATMPPEIRRVTETFLHNPEKIEVSKPASTAVTVAQSQVACGREPHEKRETLRSLIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   ++N IIFCN+K+ V  L  SL+K GFSV A+HG++DQ +R   L  F++G + ++V
Sbjct: 241 AATDLQNAIIFCNRKREVALLAKSLQKHGFSVGALHGDMDQSARTAALDQFRKGELPILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HVFNFDVP+  ++Y+HR+GRTGRAGR G A ++VA  D K I AI
Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRVGRTGRAGRLGTAISIVAPSDQKSIAAI 360

Query: 361 EKLIEKKVDWLNGDL--SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           EKLI K++  ++      +     E  D    +  R +    ++  G DR  +     + 
Sbjct: 361 EKLIGKEIPRVDAGPVGEADREQAEDTDRPARSSRRSSESRSREVRGEDRPARESRGPRR 420

Query: 419 HIPLKESEKISKLQQDIQENDADSLG 444
             P  E    ++  ++ +E  A    
Sbjct: 421 E-PRGEGRGEARPAREPREARAPVEA 445


>gi|91976935|ref|YP_569594.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
 gi|91683391|gb|ABE39693.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
          Length = 500

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 221/370 (59%), Positives = 281/370 (75%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS KV+ AV  +GY  PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MSFSNLGLSDKVLAAVAASGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV + F+KYG    LTVALLIGG+ F  Q+ KL 
Sbjct: 61  TMLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQKLTVALLIGGVSFGDQDVKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG LL+  +E+LVIDEADRMLDMGFIP I+ +  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERVCKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM  E+++++E FL NP++IEV+ P+STA T+    V    +  +K   L++L++
Sbjct: 181 LFFTATMPPEIRRITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRRLIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   ++N IIFCN+K+ V  L  SL+K GFSV A+HG++DQ +R   L  F++G + ++V
Sbjct: 241 AATDLQNAIIFCNRKREVALLAKSLQKHGFSVGALHGDMDQSARTAALDQFRKGELPILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HVFNFDVP+  ++Y+HR+GRTGRAGR G A ++VA  D K I AI
Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRVGRTGRAGRLGTAISIVAPSDQKSIAAI 360

Query: 361 EKLIEKKVDW 370
           EKLI K++  
Sbjct: 361 EKLIGKEIPH 370


>gi|149914601|ref|ZP_01903131.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. AzwK-3b]
 gi|149811394|gb|EDM71229.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. AzwK-3b]
          Length = 511

 Score =  201 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 212/407 (52%), Positives = 279/407 (68%), Gaps = 8/407 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L+PKV+ AV +AGY  PTPIQ   IP  L+  D+ GIAQTGTGKTASF LPML+
Sbjct: 3   KFSDLNLNPKVLKAVEEAGYTDPTPIQAGAIPPALEGRDILGIAQTGTGKTASFTLPMLS 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y KN  LT ALLIGG+ F+ Q+K +++
Sbjct: 63  LLARGRARARMPRSLVLCPTRELAAQVAENFDTYSKNLKLTKALLIGGVSFKEQDKLIDK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLICTPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQT 
Sbjct: 123 GVDVLICTPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTF 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET------IEHCFVATYAQYSKKCALL 235
            FSATM  E+++++  FLQNP RIEV   ++ +ET      +        A   K+  L 
Sbjct: 183 FFSATMAPEIERITNTFLQNPVRIEVARQATASETIEQGVVMFKPSRRERADSEKRDILR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +    +   N I+FCN+K +V  +  SL+K G+    IHG++DQ  R + L  F+ G 
Sbjct: 243 AIIDAEGEACTNAIVFCNRKVDVDIVSKSLKKHGYDAAPIHGDLDQSQRTRTLDGFRAGD 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VASD+AARGLD+P V HVFN+DVP  AE+Y+HRIGRTGRAGR GKA  +    D K
Sbjct: 303 LKILVASDVAARGLDVPSVSHVFNYDVPGHAEDYVHRIGRTGRAGRSGKAMMISGPRDDK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           ++DAIE+LI+K++  L   ++  +P  E  D A    AR       K
Sbjct: 363 NLDAIERLIQKQIPRLENPVAGTSPSDE--DSAASPDARPEAKSDDK 407


>gi|326403205|ref|YP_004283286.1| ATP-dependent RNA helicase [Acidiphilium multivorum AIU301]
 gi|325050066|dbj|BAJ80404.1| ATP-dependent RNA helicase [Acidiphilium multivorum AIU301]
          Length = 510

 Score =  200 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 210/467 (44%), Positives = 287/467 (61%), Gaps = 16/467 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLS  ++ A+ + GY+ PTPIQ + IP VL   DV G AQTGTGKTASF LPML I
Sbjct: 28  FASLGLSEPILKALEEKGYLNPTPIQEQAIPTVLMGRDVLGCAQTGTGKTASFTLPMLDI 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   RAR RMPR+LILEPTRELA QVA+NF +YGK+  L  ALLIGG     Q   L RG
Sbjct: 88  LSGSRARARMPRSLILEPTRELALQVAENFVQYGKHLKLNHALLIGGESMGEQRDVLTRG 147

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR++D F RG LL++++ +LVIDEADRMLDMGFIP I+ I SL+P  RQTL 
Sbjct: 148 VDVLIATPGRLIDIFERGGLLLSDVRVLVIDEADRMLDMGFIPDIERIVSLLPTMRQTLF 207

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++++++ FL NPK+I V+ P++ A TI            ++     + L   
Sbjct: 208 FSATMAPEIRRLADAFLSNPKQITVSRPATVATTITEGLSLVATHDKREA---LRRLIRT 264

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           + ++N ++FCN+K++V  LC SL +  FS   +HG++ Q +R   L  FK G I+L+V S
Sbjct: 265 EDVQNALVFCNRKRDVDILCKSLTRHKFSAGMLHGDMPQSARFATLERFKAGEIRLLVCS 324

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HVFNFDVP+ AE+Y+HRIGRTGRAG  G+A TL    D   +DAIE 
Sbjct: 325 DVAARGIDIGGLSHVFNFDVPHHAEDYVHRIGRTGRAGMQGRALTLATPADRAAVDAIEL 384

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPL 422
           LI   +  L  D   L+P   + + A+    R+      K+    ++    +++    P 
Sbjct: 385 LIGHPIPRLAVD--GLDPV--EWEEAESRGRRRGGKPAAKAAPPAKKAPKPAARAETPPA 440

Query: 423 KESEKISKLQQDIQENDA---------DSLGFRGNMPAFMLPKNRGK 460
            E + + +  ++                 +GF  ++PAFM  + R +
Sbjct: 441 AEEQPVPRRSREPGNRRGGREDAGPREPVVGFGDDIPAFMQIRRRAR 487


>gi|255261571|ref|ZP_05340913.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
 gi|255103906|gb|EET46580.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
          Length = 499

 Score =  199 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 216/490 (44%), Positives = 305/490 (62%), Gaps = 35/490 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L  KV+ AV DAGY +PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM++
Sbjct: 3   KFSDLNLDRKVLSAVEDAGYTEPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMIS 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L++GRAR RMPR+L+L PTRELAAQVA+NF+ Y KN  LT ALLIGG+ F+ Q++ ++R
Sbjct: 63  MLKRGRARARMPRSLVLAPTRELAAQVAENFDVYAKNTKLTKALLIGGVSFKEQDQLIDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I  L PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFGLTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT------YAQYSKKCALL 235
            FSATM  E+++++  FL NP ++EV   ++T++TI    V             K+  L 
Sbjct: 183 FFSATMAPEIERITNTFLSNPAKVEVARAATTSDTITQSVVMFKGSRKDRESSEKRQLLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +    D  +NGIIFCN+K +V  +  S++K G     IHG++DQ  RM+ L+ F++GT
Sbjct: 243 TMIENEGDKCRNGIIFCNRKVDVDIVAKSMKKYGLDASPIHGDLDQSKRMETLAAFRDGT 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VASD+AARGLDIP+V HVFN+DVP+ AE+Y+HRIGRTGRAG+ G A  +    D K
Sbjct: 303 LRFLVASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGKLGTAMMICVPRDEK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNP--------PLEKIDIAQHNHARKNNPIPQKSTG-- 405
           ++  IE+L++ ++    G   +  P        P E         +RK +   ++     
Sbjct: 363 NLGDIERLVKMEIPRGEGSRDTTAPTQDAAPEAPKEDKPKRTRTRSRKKDAPKEEIVADA 422

Query: 406 -----FDRRKKNYSSQKSHIPLKE--SEKISKLQQDI------------QENDADSLGFR 446
                 +  K++   QK   P+++  +E   K +Q+             +++    +G  
Sbjct: 423 VDAAPVEEPKEDAPKQKQAEPVEKQAAEAPEKPKQERGNRVGRGKRDNNRDHGNKVMGMG 482

Query: 447 GNMPAFMLPK 456
            + P F+   
Sbjct: 483 DDAPTFIAKS 492


>gi|148259867|ref|YP_001233994.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium
           cryptum JF-5]
 gi|146401548|gb|ABQ30075.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5]
          Length = 503

 Score =  199 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 210/468 (44%), Positives = 284/468 (60%), Gaps = 18/468 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLS  ++ A+ + GY+ PTPIQ + IP VL   DV G AQTGTGKTASF LPML I
Sbjct: 21  FASLGLSEPILKALEEKGYLNPTPIQEQAIPTVLMGRDVLGCAQTGTGKTASFTLPMLDI 80

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   RAR RMPR+LILEPTRELA QVA+NF +YGK+  L  ALLIGG     Q   L RG
Sbjct: 81  LSGSRARARMPRSLILEPTRELALQVAENFVQYGKHLKLNHALLIGGESMGEQRDVLTRG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR++D F RG LL++++ +LVIDEADRMLDMGFIP I+ I SL+P  RQTL 
Sbjct: 141 VDVLIATPGRLIDIFERGGLLLSDVRVLVIDEADRMLDMGFIPDIERIVSLLPTMRQTLF 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++++++ FL NPK+I V+ P++ A TI            ++     + L   
Sbjct: 201 FSATMAPEIRRLADAFLSNPKQITVSRPATVATTITEGLSLVATHDKREA---LRRLIRT 257

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           + ++N ++FCN+K++V  LC SL +  FS   +HG++ Q +R   L  FK G I+L+V S
Sbjct: 258 EDVQNALVFCNRKRDVDILCKSLTRHKFSAGMLHGDMPQSARFATLERFKAGEIRLLVCS 317

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HVFNFDVP+ AE+Y+HRIGRTGRAG  G+A TL    D   +DAIE 
Sbjct: 318 DVAARGIDIGGLSHVFNFDVPHHAEDYVHRIGRTGRAGMQGRALTLATPADRAAVDAIEL 377

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPL 422
           LI   +  L  D   L+P   +      +  R+    P        +K    + ++  P 
Sbjct: 378 LIGHPIPRLAVD--GLDPVEWE---EAESRGRRRGGKPAAKAAPPAKKAPKPAARAETPP 432

Query: 423 KESEKISKLQ----------QDIQENDADSLGFRGNMPAFMLPKNRGK 460
              E+ +  +          ++        +GF  ++PAFM  + R +
Sbjct: 433 AAEEQPAPRRSREPGNRRGGREDAGPREPVVGFGDDIPAFMQIRRRAR 480


>gi|90424330|ref|YP_532700.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
 gi|90106344|gb|ABD88381.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
          Length = 503

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 239/501 (47%), Positives = 311/501 (62%), Gaps = 47/501 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS KV+ AV   GY  PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML
Sbjct: 8   MSFTHLGLSDKVLAAVAATGYTTPTPIQDQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 67

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV + F+KYG    L VALLIGG+ F  Q+ KL 
Sbjct: 68  TLLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDIKLT 127

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG LL+  +E+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 128 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 187

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM +E+++++E FL NP +IEV+ P+STA T+    VAT  +  +K   L++LL+
Sbjct: 188 LFFTATMPNEIRRITETFLHNPVKIEVSKPASTAVTVTQSQVATGREPHEKRETLRRLLR 247

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               ++N IIFCN+K+ V  L  SLEK GFSV A+HG+++Q +R   L  F++G + ++V
Sbjct: 248 DAKDLQNAIIFCNRKREVALLAKSLEKHGFSVGALHGDMEQSARTAALDQFRKGELPILV 307

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HV NFDVP+  ++Y+HRIGRTGRAGR G A ++V   D K I AI
Sbjct: 308 ASDVAARGLDIPEVSHVINFDVPHHPDDYVHRIGRTGRAGRAGTAISIVCPSDTKSIAAI 367

Query: 361 EKLIEKKV--------DWLNGDLSSLNP--------------PLEKIDIAQHNHARKNNP 398
           EKLI + +        D++   +                     E+    +     +  P
Sbjct: 368 EKLIGQDIPKADLGVSDFVEASVEEAPARRSRSSRKSSESRGREERSSEPRAQEQEERKP 427

Query: 399 IPQKSTGFDRRKKNYSSQKSHIPLKESEKISKL-------------------QQDIQEND 439
             ++S G   R      ++SH P +  E +                       +  +E D
Sbjct: 428 RRERSRGGQDR-----PERSHEPRRNDEAVKPFVPPVPLPPSQTPSIGRTPAPRPSREPD 482

Query: 440 ADSLGFRGNMPAFMLPKNRGK 460
            +      ++PAF+L   R +
Sbjct: 483 LEP-ADHSHLPAFLLRPVRAR 502


>gi|99081650|ref|YP_613804.1| DEAD/DEAH box helicase-like [Ruegeria sp. TM1040]
 gi|99037930|gb|ABF64542.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TM1040]
          Length = 493

 Score =  198 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 223/465 (47%), Positives = 298/465 (64%), Gaps = 16/465 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T
Sbjct: 3   KFTDLNLNPKVLKAIEEAGYESPTPIQAGAIPAALEGRDVLGIAQTGTGKTASFTLPMIT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+  ++R
Sbjct: 63  RLARGRARARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDAAIDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  IEI+V+DEADRMLDMGFIP I+ I SL PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY------SKKCALL 235
            FSATM  E+++++  FL  P+R+E+   ++T+E IE   V   A         K+  L 
Sbjct: 183 FFSATMAPEIERITNTFLSGPERVEIARQATTSENIEQAVVMFKASRKDREGSEKRRVLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + + Q  + ++N IIFCN+K +V  +  SL+K G+    IHG++DQ  R K L  F++GT
Sbjct: 243 ELINQEGEAVQNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLDGFRDGT 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VASD+AARGLD+P V HVFNFDVP  AE+Y+HRIGRTGRAGR GKA TL +  D K
Sbjct: 303 LKILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAITLCSPRDEK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +DA+E L++K++  L      + P   K      +   K  P  +       R K  S+
Sbjct: 363 ALDAVEGLVQKEITRLEN---PVKPTPRKTATKDEDAGDKPKPARR------SRSKAASA 413

Query: 416 QKSHIPLKESEKISKLQ-QDIQENDADSLGFRGNMPAFMLPKNRG 459
           +    P  E+   +  Q +  Q+   +    R   P+      + 
Sbjct: 414 KTDATPTPEAANDAAPQVEAPQQQPQEPKETRAEQPSAGAKSGKS 458


>gi|126736040|ref|ZP_01751784.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2]
 gi|126714597|gb|EBA11464.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2]
          Length = 484

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 202/475 (42%), Positives = 285/475 (60%), Gaps = 20/475 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L+PKV+ AV + GY  PTPIQ   I   L+  DV GIAQTGTGKTA+F LPM+T
Sbjct: 3   KFSDLNLAPKVLKAVTETGYDTPTPIQAGAIAPALEGRDVLGIAQTGTGKTAAFTLPMIT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K   L+ ALLIGG  F+ Q+K +++
Sbjct: 63  LLGRGRARARMPRSLVLAPTRELAAQVAENFDAYAKYTKLSRALLIGGTSFKDQDKIIDK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDH  RGKL++ +++I+V+DEADRMLDMGFIP I+ I    PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHLERGKLILTDVKIMVVDEADRMLDMGFIPDIEEIFKRTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRI------EVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            FSATM  E+++++  FL NP +I        NT       +            K+  L 
Sbjct: 183 FFSATMAPEIERITNTFLSNPAKIEVARAATTNTNIKQGVVMFKGSAKPKEPSEKRELLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + +    +   N IIFCN+K +V  +  SL K G+    IHG++DQ  R K L  F++  
Sbjct: 243 KLIDAEGEACTNAIIFCNRKSDVDIVAKSLNKYGYQAAPIHGDLDQSHRTKTLDKFRDNE 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VASD+AARGLDIP V HVFNFDVP+ AE+Y+HRIGRTGRAGR G A  +    D K
Sbjct: 303 LRILVASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRIGRTGRAGRSGTAIMICVPRDEK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH-----NHARKNNPIPQKSTGFDRRK 410
           +++ +E+L+++ +  L+       P   + + A+         RK +  P+      + +
Sbjct: 363 NLEDVERLVKETIPRLDAPGGKAAPATAEPEKAEEKPKRTRSRRKKDDAPEAKADAPKAE 422

Query: 411 KNYSSQKSHIPLKESEKISK---------LQQDIQENDADSLGFRGNMPAFMLPK 456
           +   ++ +    K  EK  +            + ++N    +G     PAF+   
Sbjct: 423 EAQPAEAAKPEPKTDEKPRQERGRGGRGRGNNERRDNGHKVVGMGDEPPAFIAMS 477


>gi|86137575|ref|ZP_01056152.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193]
 gi|85825910|gb|EAQ46108.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193]
          Length = 527

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 217/431 (50%), Positives = 288/431 (66%), Gaps = 13/431 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L+ KV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T
Sbjct: 3   KFTDLNLNAKVLKAIAEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMIT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q++ +++
Sbjct: 63  LLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDQLIDK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF------VATYAQYSKKCALL 235
            FSATM  E+++++  FL  P+RIEV   +S +ETIE                 K+ AL 
Sbjct: 183 FFSATMAPEIERITNTFLSAPERIEVARQASASETIEQHVVLFKASRKDREASEKRTALR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +    + + NGIIFCN+K +V  +  SL+K GF    IHG++DQ  R K L  F+EG 
Sbjct: 243 ALINAEGEKLTNGIIFCNRKSDVDIVAKSLKKYGFDAAPIHGDLDQSQRTKTLDGFREGK 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VASD+AARGLD+P V HVFNFDVP   E+Y+HRIGRTGRAGR GKA T+ +  D K
Sbjct: 303 LRILVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGREGKAITICSGRDEK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            + A+E L++K+++ L         P++K + A+ + A+K +    K T          S
Sbjct: 363 ALAAVESLLQKEINRLEN-------PVKKAEPAKRSSAKKPSDQDAKPTTGSETGSGRKS 415

Query: 416 QKSHIPLKESE 426
            +S    K  E
Sbjct: 416 TRSKTSTKAVE 426


>gi|126727175|ref|ZP_01743012.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
           HTCC2150]
 gi|126703603|gb|EBA02699.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
           HTCC2150]
          Length = 574

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 217/485 (44%), Positives = 292/485 (60%), Gaps = 36/485 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L PKV+ AV + GY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM++
Sbjct: 3   KFSELSLDPKVLKAVAETGYESPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPMIS 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K   LT ALLIGG+ F+ Q+K ++R
Sbjct: 63  LLSKGRARARMPRSLVLAPTRELAAQVAENFDAYSKYSKLTKALLIGGVSFKEQDKLIDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDH  RGKLL+  ++I+V+DEADRMLDMGFIP I+ I  L PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHVERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFKLTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE------TIEHCFVATYAQYSKKCALL 235
            FSATM  E+++++  FL  P ++EV   ++T+E               +    K+  L 
Sbjct: 183 FFSATMAPEIERITNTFLSAPVKVEVARAATTSETITQGLIWHEPKRREFGAKDKRNILR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +    +   N IIFCN+K  V  +  SL+K G++   IHG++DQ  RMK+L+ F+EG 
Sbjct: 243 ATIEAEGEKCTNAIIFCNRKVEVDIVAKSLKKHGYNAEPIHGDLDQSHRMKVLNGFREGE 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ + ASD+AARGLDIP+V HVFNFDVP  AE+Y+HRIGRTGRAGR G AFT+    D K
Sbjct: 303 IRFLCASDVAARGLDIPNVSHVFNFDVPGHAEDYVHRIGRTGRAGRTGTAFTIATPNDAK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPL------EKIDIAQHNHARKNNPIPQKSTGFDRR 409
            + A+E+L++  +  +    S   PP       EK    +     +      KS   D  
Sbjct: 363 QLAAVEELVKMAIPRVENPWS---PPTGGKAKDEKPREERKKREPRKTREDHKSKSEDTP 419

Query: 410 KKNYSSQKSHI----PLKESEKISKLQQDIQ-----------------ENDADSLGFRGN 448
            +N  +         P+K  +K +  ++  Q                 +     LG   +
Sbjct: 420 TENTPAASEKTAQNEPVKSDDKNNAQREQKQHDRNQRGRGRGGRNNQQDRGPKVLGMGEH 479

Query: 449 MPAFM 453
           MP+F+
Sbjct: 480 MPSFI 484


>gi|310816695|ref|YP_003964659.1| putative ATP-dependent RNA helicase RhlE [Ketogulonicigenium
           vulgare Y25]
 gi|308755430|gb|ADO43359.1| putative ATP-dependent RNA helicase RhlE [Ketogulonicigenium
           vulgare Y25]
          Length = 517

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 214/515 (41%), Positives = 293/515 (56%), Gaps = 53/515 (10%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+DL L PKV+ AV +AGY  PTPIQ   IP  L   DV GIAQTGTGKTASF LPM+ 
Sbjct: 3   EFSDLNLDPKVLQAVAEAGYTTPTPIQAGAIPEALAGRDVLGIAQTGTGKTASFTLPMIQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K   LT ALLIGG+ F+ Q+  ++R
Sbjct: 63  LLSRGRARARMPRSLVLCPTRELAAQVAENFDMYAKYTKLTKALLIGGVSFKDQDTLIDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I  + PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFQMTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRI------EVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            FSATM  E+++++  FL  P RI        N   + A               K+  L 
Sbjct: 183 FFSATMAPEIERITNTFLSAPARIEVARAATTNQNITQAVVQFKGSSKEREPSEKRAVLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +     T+ N IIFCN+K +V  +  SL+K G++   IHG++DQ  RM+ L  F++G+
Sbjct: 243 ALIEAESATLTNAIIFCNRKIDVDIVAKSLKKYGYNAEPIHGDLDQSQRMRTLDGFRDGS 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VASD+AARGLDIP V HVFNFDVP+ AE+Y+HRIGRTGRAGR G  F +    D K
Sbjct: 303 VKFLVASDVAARGLDIPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRTGSTFMICVPRDEK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNP-----PLEKIDIAQHNHARKNNPIPQKST------ 404
           ++ AIE L++  +  +   L  L P       +  +  Q    R+  P   ++       
Sbjct: 363 NLAAIEALVQSTITRVESPLKELPPARKPRAEKPAEDKQTERPRREKPRLARNRPEAAPV 422

Query: 405 ------------------GFDRRKKNYSSQKSH---------IPLKESEKISKLQQDIQE 437
                                RR+K    +             P +E  +    ++  ++
Sbjct: 423 EDVVEAVAAPVAAAPAPAEKSRRRKPRRDEPQAEVAVAETPIAPREERHERHDHKEGRKD 482

Query: 438 ------NDADSLGFRGNMPAFMLPK---NRGKLND 463
                 +D    G+  ++P F+       R K++ 
Sbjct: 483 DRKHRRDDGGVAGWGADVPDFIRLSFAERRKKVSA 517


>gi|126729580|ref|ZP_01745393.1| ATP-dependent RNA helicase RhlE [Sagittula stellata E-37]
 gi|126709699|gb|EBA08752.1| ATP-dependent RNA helicase RhlE [Sagittula stellata E-37]
          Length = 469

 Score =  198 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 206/381 (54%), Positives = 269/381 (70%), Gaps = 6/381 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL LSPKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+ 
Sbjct: 3   KFSDLDLSPKVLKAIEEAGYTTPTPIQAGAIPHALEGKDVLGIAQTGTGKTASFTLPMIH 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+  +++
Sbjct: 63  KLARGRARARMPRSLVLCPTRELAAQVAENFDTYSKHVKLTKALLIGGVSFKEQDVLIDK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  IEI+V+DEADRMLDMGFIP I+ I SL PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI------EHCFVATYAQYSKKCALL 235
            FSATM  E+++++  FL  P RIEV   ++ +ETI                  K+  L 
Sbjct: 183 FFSATMAPEIERITNTFLSAPARIEVARQATASETITQGAVVFTPSRRDRESSEKRAVLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +    +   N IIFCN+K +V  +  SL K G++   IHG++DQ  R + L  F++G+
Sbjct: 243 ALIDAEGEACSNAIIFCNRKVDVDIVAKSLTKYGYNAAPIHGDLDQSQRTRTLDGFRDGS 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++L++ASD+AARGLDIP V HVFNFDVP+ AE+Y+HRIGRTGRAGR GKA+T+    D K
Sbjct: 303 VRLLIASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRIGRTGRAGRSGKAYTICTPRDEK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLS 376
           + DA+EKL++K++  L+  + 
Sbjct: 363 YFDAVEKLLQKEIPRLDNPVK 383


>gi|259416782|ref|ZP_05740702.1| ATP-dependent RNA helicase RhlE [Silicibacter sp. TrichCH4B]
 gi|259348221|gb|EEW59998.1| ATP-dependent RNA helicase RhlE [Silicibacter sp. TrichCH4B]
          Length = 490

 Score =  198 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 222/481 (46%), Positives = 302/481 (62%), Gaps = 26/481 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T
Sbjct: 3   KFTDLNLNPKVLKAIEEAGYESPTPIQAGAIPAALEGRDVLGIAQTGTGKTASFTLPMIT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+  ++R
Sbjct: 63  RLARGRARARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDAAIDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  IEI+V+DEADRMLDMGFIP I+ I SL PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY------SKKCALL 235
            FSATM  E+++++  FL  P+R+E+   ++T+ETIE   V   A         K+  L 
Sbjct: 183 FFSATMAPEIERITNTFLSGPERVEIARQATTSETIEQAVVMFKASRKDREGSEKRRVLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           + + Q  + +KN IIFCN+K +V  +  SL+K G+    IHG++DQ  R K L  F++GT
Sbjct: 243 ELINQEGEAVKNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLDGFRDGT 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VASD+AARGLD+P V HVFNFDVP  AE+Y+HRIGRTGRAGR+GKA TL +  D K
Sbjct: 303 LKILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGRNGKAITLCSPRDEK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +DA+E L++K++  L   +          + A  +  +       K+T     +    +
Sbjct: 363 ALDAVEGLVQKEITRLENPVKPTPRKTATKEDATSDKPKPARRSRSKTTAAKSEEPPVEA 422

Query: 416 QKSHIPLKESEKISKLQQDIQENDADS--------------------LGFRGNMPAFMLP 455
                  +  +   K Q+  ++   D+                    +G   +MP+F+  
Sbjct: 423 AAQTTEQQPQQAQDKPQRQAEKPADDTNKSGKSRSRGRRDDRRDDKVVGMGDHMPSFIAL 482

Query: 456 K 456
            
Sbjct: 483 S 483


>gi|329889383|ref|ZP_08267726.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
 gi|328844684|gb|EGF94248.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
          Length = 490

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 211/485 (43%), Positives = 283/485 (58%), Gaps = 32/485 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ LGLSP  + AV D GY   TPIQ + IP+ L   DV GIAQTGTGKTA+F LPM+ 
Sbjct: 3   EFSKLGLSPTTLQAVADTGYTTATPIQEQAIPVALAGRDVLGIAQTGTGKTAAFTLPMVD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L  GRAR RMPR ++L PTRELA QVA++F KY K   L   LLIGG+    Q   L +
Sbjct: 63  RLASGRARARMPRAVVLAPTRELADQVAESFAKYAKGTRLNWVLLIGGVSMGDQIAALNK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LD F+RGK+L+  +E++V+DEADRMLDMGFIP I+ I  L P  RQTL
Sbjct: 123 GVDVLIATPGRLLDLFDRGKMLLTGVELMVVDEADRMLDMGFIPDIERIFKLTPPRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+ ++++ FL++P RIEV  P++TA+TI        +   K      + L  
Sbjct: 183 FFSATMPPEITRLTQQFLKDPTRIEVARPATTADTITQHITRLPSSDPKAKRTALRALVE 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  ++NGI+FCN+K  V  +  SL+  GF+   IHG++DQ  RMK LS+F+ G ++L+VA
Sbjct: 243 RGDVQNGIVFCNRKSEVDIVAKSLQVHGFNAAPIHGDLDQSLRMKTLSDFRSGELKLLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIP V HVFN+DVP+ A++Y+HRIGRTGRAGR G+AF +V   D K +D + 
Sbjct: 303 SDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRLGEAFMIVTPADDKSLDKVL 362

Query: 362 KLIEKKVDWLN---GDLSSLNP---------------------------PLEKIDIAQHN 391
           KLI+K+   L     D +S+                                 +DI    
Sbjct: 363 KLIKKEPVELPLDDIDFASIKDRPRDDSRSSRGRGRGERSERSRSRKTVEAAPVDIESDA 422

Query: 392 HARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
                   P K+    RR +  S +KS      +   +         D     F  ++PA
Sbjct: 423 PVAAEVVAPHKADEAPRRSR--SRKKSEDRASTAAPAAAPAVAKSSGDIRGSAFGDDVPA 480

Query: 452 FMLPK 456
           F+   
Sbjct: 481 FLRRP 485


>gi|288958478|ref|YP_003448819.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
 gi|288910786|dbj|BAI72275.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
          Length = 521

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 215/515 (41%), Positives = 304/515 (59%), Gaps = 54/515 (10%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL P V+ A+ D GY +PTPIQ + IP VLQR DV G AQTGTGKTASF LPM+
Sbjct: 1   MLFSELGLGPDVLRAIEDKGYTQPTPIQEQAIPCVLQRRDVLGCAQTGTGKTASFTLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +IL  GRAR RMPR+LILEPTRELAAQVA++FE YGK + L++ALLIGG  F  Q KKL+
Sbjct: 61  SILASGRARARMPRSLILEPTRELAAQVAESFEVYGKYHKLSMALLIGGETFTEQVKKLD 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR++D F RG +++N+I++ VIDEADRMLDMGFIP I+ I S +P  RQT
Sbjct: 121 RGVDVLIATPGRLIDLFERGNIMLNDIKVFVIDEADRMLDMGFIPDIERIVSKLPKNRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++++++ FL +P  I V  P+S AET+       +    ++     + L 
Sbjct: 181 LFFSATMPPEIRRLADAFLTDPMEITVAPPASPAETVTQALALVHEMDKRRA---LRHLL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +KN  IFCN+K+++  L  SLE+ GF+V A+HG++ Q  R + L  FK+G I L+V
Sbjct: 238 QTEDVKNAFIFCNRKRDIAVLQKSLERHGFNVGALHGDMVQSKRTETLERFKQGEITLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SD+AARG+D+  + HVFNFDVP   ++Y+HRIGRTGRAG+ G+AF L   +D K + AI
Sbjct: 298 CSDVAARGIDVQGLSHVFNFDVPLTPDDYVHRIGRTGRAGKQGRAFMLATPDDTKLVGAI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
            +LI++++  +  D        E+   ++     +      K       +     ++   
Sbjct: 358 TRLIKREIPMIAIDGLETAEFGEEDSSSRARGRGRGGRGGAKPDSRSEARPPRGGREERA 417

Query: 421 PLKE----------------------SEKISKLQQDIQENDADS---------------- 442
           P +E                       E+  + ++  +E+ A +                
Sbjct: 418 PREEMAPREERAAREERPLREERPVRDERPVREERQPRESLAAAESRRNSEPRRDRDRDR 477

Query: 443 -------------LGFRGNMPAFMLPKNRGKLNDK 464
                        +GF  +MPAFML   R + + +
Sbjct: 478 RRRRDDDDDDVVVIGFGDHMPAFMLRSARPRPSAE 512


>gi|89053691|ref|YP_509142.1| DEAD/DEAH box helicase-like [Jannaschia sp. CCS1]
 gi|88863240|gb|ABD54117.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1]
          Length = 644

 Score =  197 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 202/391 (51%), Positives = 267/391 (68%), Gaps = 6/391 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L+PKV  A+++AGY  PTPIQ   IP  L   DV GIAQTGTGKTASF LPM+T
Sbjct: 12  TFADLDLNPKVQKAIVEAGYESPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMIT 71

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q + +++
Sbjct: 72  MLARGRARARMPRSLVLCPTRELAAQVAENFDIYAKHVKLTKALLIGGVSFKEQEQAIDK 131

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKL++N+++++V+DEADRMLDMGFIP I+ I  LVPFTRQTL
Sbjct: 132 GVDVLIATPGRLLDHFERGKLILNDVKVMVVDEADRMLDMGFIPDIERIFGLVPFTRQTL 191

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTP------SSTAETIEHCFVATYAQYSKKCALL 235
            FSATM  E+++++  FL NP++IEV                            K+  L 
Sbjct: 192 FFSATMAPEIERITNTFLSNPEKIEVERQSTTSATIEQRLIEFKAPRRDAQAKMKRDMLR 251

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +    D  +N IIFCN+K +V  +  SL+K   +   IHG++DQ  RM+ L+ F++G+
Sbjct: 252 AAITAEGDAFRNAIIFCNRKVDVDIVAKSLKKHNLNAEPIHGDLDQSHRMRTLAGFRDGS 311

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I L+VASD+AARGLDIP+V HV N+DVP+ AE+Y+HRIGRTGRAG+ G A TL    D K
Sbjct: 312 ITLLVASDVAARGLDIPNVSHVINYDVPSHAEDYVHRIGRTGRAGKTGVAITLCVPSDEK 371

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
           ++ AIE LI++ +      + +  P  E  D
Sbjct: 372 YLGAIEGLIKQPIPRAEAPMDAGTPKAETED 402


>gi|144901078|emb|CAM77942.1| ATP-dependent RNA helicase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 570

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 204/405 (50%), Positives = 274/405 (67%), Gaps = 4/405 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLSP+++ AV ++GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LPM+
Sbjct: 8   MSFADLGLSPELLQAVEESGYTTPTPIQQQAIPVVLMGRDVLGCAQTGTGKTASFTLPMI 67

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  GRA+ RMPR+LIL PTRELAAQVA+NF+KYGK + L  AL+IGG     Q   L+
Sbjct: 68  EILAAGRAKARMPRSLILAPTRELAAQVAENFDKYGKYHKLNKALIIGGESMSDQIAILD 127

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LD F+RG++L+N++++LVIDEADRMLDMGFIP +Q I S++P  RQT
Sbjct: 128 RGVDVLIATPGRLLDMFDRGRILLNDVKVLVIDEADRMLDMGFIPDVQRIVSMLPKMRQT 187

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+  E++K+++ FL NPK I V+  SSTA T+E           +      + + 
Sbjct: 188 LFFSATLGPEIRKLADEFLMNPKEISVSAQSSTAVTVEQFLAVVDHIDKR---ETLRHII 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +KN  IFCN+K++V  L  SL+K GF V  +HG++ Q +R++ L+ FK G  +L+V
Sbjct: 245 RIENLKNAFIFCNRKRDVDILFKSLKKHGFDVVQMHGDMSQPARLESLAKFKSGEARLLV 304

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SD+ ARG+DI  V HVFNFDVP  AE+Y+HRIGRTGRAG  GKAFT+ + ED + + AI
Sbjct: 305 CSDVVARGIDIKAVSHVFNFDVPIHAEDYVHRIGRTGRAGETGKAFTIASPEDGRFVAAI 364

Query: 361 EKLIEKKVDWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           E LI + +  +  + +  L+  +            +  P   K +
Sbjct: 365 EGLIGQGLPRMEVEGVPPLDLDMSARRGRGPGRGAEKRPSSDKDS 409


>gi|85703303|ref|ZP_01034407.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. 217]
 gi|85672231|gb|EAQ27088.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. 217]
          Length = 515

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 218/507 (42%), Positives = 303/507 (59%), Gaps = 53/507 (10%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L+PKV+ A+ +AGY  PTPIQ + IP  LQ  DV GIAQTGTGKTASF LPML+
Sbjct: 3   KFSDLNLNPKVLKAIEEAGYETPTPIQAEAIPHALQGRDVLGIAQTGTGKTASFTLPMLS 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+K +++
Sbjct: 63  LLSRGRARARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQDKLIDK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET------IEHCFVATYAQYSKKCALL 235
            FSATM  E+++++  FL NP R+EV   ++ +ET      +        A   K+  L 
Sbjct: 183 FFSATMAPEIERITNTFLSNPARVEVARQATASETIEQGVVMFKPTRRENADSEKRRLLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             + +  +   N IIFCN+K +V  +  SL K G+    IHG+++Q  R + L  F+ GT
Sbjct: 243 ALIDREGEACSNAIIFCNRKVDVDVVSKSLIKYGYDAAPIHGDLEQSQRTRTLDGFRAGT 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ ++ASD+AARGLD+P V HVFNFDVP+ AE+Y+HRIGRTGRAGR GKA  +    D K
Sbjct: 303 LRFLIASDVAARGLDVPAVSHVFNFDVPSHAEDYVHRIGRTGRAGRAGKALMICNPRDEK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-----------------KNNP 398
           ++  +E L++K++  +   ++ L  P    +  Q +  R                  N P
Sbjct: 363 NLAGVEALLQKEIPRVESPIT-LGAPTTNAEPPQGSDERPVKPRRSRTASRSRGKSDNAP 421

Query: 399 IP-----------------QKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDI------ 435
           +P                 Q++T  +R      SQ      ++SE+  +  Q        
Sbjct: 422 LPVQNPTEPVAEVMAVKPEQRTTSSERSAPRQESQPERSQERQSERPQERGQRQGGGNSG 481

Query: 436 ------QENDADSLGFRGNMPAFMLPK 456
                 Q      +G   ++P+F+   
Sbjct: 482 GRGRQDQAGGPRVVGLGDHLPSFIALS 508


>gi|316934368|ref|YP_004109350.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315602082|gb|ADU44617.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 469

 Score =  196 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 233/468 (49%), Positives = 303/468 (64%), Gaps = 8/468 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS KV  AV  AGYV PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MSFTNLGLSTKVQAAVAAAGYVSPTPIQQQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV + F+KYG    L VALLIGG+ F  Q+ KL 
Sbjct: 61  TLLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG LL+  +E+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVEMLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM  E+++++E FL NP++IEV+ P+STA T+    V    +  +K   L+ L++
Sbjct: 181 LFFTATMPTEIRRITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRHLIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +KN IIFCN+K+ V  L  SL++ GFSV A+HG++DQ +RM  L  F++G + ++V
Sbjct: 241 GATDLKNAIIFCNRKREVALLARSLQRHGFSVGALHGDMDQTARMAALEAFRKGELPILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HVFNFDVP+  ++Y+HRIGRTGRAGR G A T+VA  D K + AI
Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRAGTALTIVAPSDQKSMAAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EKLI + +       S  +    + +  +   +R+      +    + R+      +   
Sbjct: 361 EKLIGQDIPRAEAAPSVASETAGEPETERPARSRRAAEGRHREPRREPREPRERKPRREP 420

Query: 421 PLKESEKISKLQQDIQ--------ENDADSLGFRGNMPAFMLPKNRGK 460
               +                    + +   G   ++PAF+L   R +
Sbjct: 421 RSAPAAAPPAAPAAHAAFGSAPPARDTSSEAGDHSHLPAFLLRPVRAR 468


>gi|146305460|ref|YP_001185925.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145573661|gb|ABP83193.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 628

 Score =  196 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 180/461 (39%), Positives = 264/461 (57%), Gaps = 17/461 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGLS  +V AV  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+ 
Sbjct: 1   MSFASLGLSEALVRAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 60  ------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                      + R   + PR L+L PTRELAAQV D+F+ Y ++     A + GG+   
Sbjct: 61  ERLFPDGHPDREQRHGPKQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L +G DVL+  PGR+LD  N+  + ++++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQVQALAKGVDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRAL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +Q   +  ++F   K     L   LEK G    AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             ++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 NKVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            K + +IE++ ++K+   D +  D S++    E+ ++ +    R      QK+ G D+ K
Sbjct: 358 EKLLKSIERMTKQKIPDGDLMGFDASAVEA--ERPEVREPRQPRNAGQKKQKAEGGDKPK 415

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
                       K+S K  K +   Q+      G R + P+
Sbjct: 416 GERHGSGRKDKGKDSGKEQKAKPQGQKRRG--QGPRNDGPS 454


>gi|260574781|ref|ZP_05842784.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
 gi|259023198|gb|EEW26491.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
          Length = 537

 Score =  196 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 217/509 (42%), Positives = 297/509 (58%), Gaps = 54/509 (10%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L P+V+ AVL+AGY  PTPIQ + IP  L   DV GIAQTGTGKTASFVLPM+T
Sbjct: 3   KFSDLALDPRVLQAVLEAGYETPTPIQAQAIPHALAGRDVLGIAQTGTGKTASFVLPMIT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +GRA+ RMPR+L+L PTRELAAQVA+NFE Y K   LT ALLIGG+ F  Q+K ++R
Sbjct: 63  LLGQGRAKARMPRSLVLCPTRELAAQVAENFETYAKYSKLTKALLIGGVSFGEQDKLIDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDH  RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQT 
Sbjct: 123 GVDVLIATPGRLLDHHERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTF 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE------TIEHCFVATYAQYSKKCALL 235
            +SATM  E+++++  FL N  +IEV   ++++E                +   K+  L 
Sbjct: 183 FYSATMAPEIERITNTFLSNAVKIEVARQATSSETIEQALIQITPTRKDRSFADKRAVLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +    +   N IIFCN+K +V  +  SL++ GF+   IHG++DQ  R + L  F++GT
Sbjct: 243 ALIRAEGEACTNAIIFCNRKMDVDVVSKSLKQHGFNASPIHGDLDQSVRTRTLDGFRDGT 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + L+VASD+AARGLDIP V HVFNFDVP+  E+Y+HRIGRTGRAGR GKAFT+    D K
Sbjct: 303 VHLLVASDVAARGLDIPAVSHVFNFDVPSHPEDYVHRIGRTGRAGRKGKAFTIATPYDDK 362

Query: 356 HIDAIEKLIEKKVD-------WLNGDLSSLNPPLE-------------------KIDIAQ 389
           ++ AIE L+++ +        ++  D      P E                   +    +
Sbjct: 363 YLAAIEHLVKQPIPRGSLPEGFVLADAGEAPAPREGGRDGKSSSSRSRSSSSRDRGPARE 422

Query: 390 HNHAR--------------------KNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKIS 429
            +  R                    +    PQ      R +   S  +   P ++  +  
Sbjct: 423 RDERRPAASEAAAPVVEAEAAPQPVREERAPQAPREERRSEPRRSEPRRDEPRRDEPRRD 482

Query: 430 KLQQDIQEND--ADSLGFRGNMPAFMLPK 456
           + ++D +  D     LG   ++P F+L  
Sbjct: 483 EPRRDYRREDRGERVLGMGDHVPDFILRS 511


>gi|209545432|ref|YP_002277661.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533109|gb|ACI53046.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 555

 Score =  196 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 212/493 (43%), Positives = 277/493 (56%), Gaps = 39/493 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGLS  +  A+ D GY  PTPIQ + IP VL   DV G+AQTGTGKTASF LPML I
Sbjct: 51  FSDLGLSDPIQRAIDDMGYRHPTPIQAQAIPYVLMGRDVLGVAQTGTGKTASFTLPMLEI 110

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   RAR RMPR+LILEPTRELA QVA+NF  YGK   L  ALLIGG     Q   L RG
Sbjct: 111 LSGSRARARMPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMAEQKDVLNRG 170

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR++D F RG LL+    +LVIDEADRMLDMGFIP I+ I +++   RQTL 
Sbjct: 171 VDVLIATPGRLIDLFERGGLLLTQTRLLVIDEADRMLDMGFIPDIEKIVAMLSPVRQTLF 230

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++++++ FLQNPK I V+ PSS A TIE   V       ++     + +   
Sbjct: 231 FSATMAPEIRRLADMFLQNPKEITVSRPSSVATTIETGLVVVDEADKRRV---LRRMLRD 287

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D ++N I+FCN+K++V  L  SL K  FS  A+HG++ Q  R   L  FK G ++++V S
Sbjct: 288 DAVQNAIVFCNRKRDVDVLYKSLVKHDFSAGALHGDLPQSVRFATLERFKSGELKILVCS 347

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HVFNFD+P  AE+Y+HRIGRTGRAGR G A++L    D    +AIE 
Sbjct: 348 DVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGRSGHAYSLATPYDRALAEAIET 407

Query: 363 LIEKKVDWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS------- 414
           LI   +  L  + ++ L    E          R     P +  G   R +N +       
Sbjct: 408 LIGHAIPRLEVEGVTQLEWSEESGTRGGRGRGRGKGKAPDRRGGKPDRARNDATPVEDKA 467

Query: 415 ----------------------------SQKSHIPLKESEKISKLQQDIQENDADSLGFR 446
                                        +      ++ ++    +  I   +   +GF 
Sbjct: 468 EPVAPPQPVSAPVPPPSPAAVPAEAASPRRSGPNRQRDRDRDRHAEDGISGQNGTVIGFG 527

Query: 447 GNMPAFMLPKNRG 459
            ++PAFM    RG
Sbjct: 528 DDVPAFMTLPRRG 540


>gi|288926741|ref|ZP_06420652.1| ATP-dependent RNA helicase DeaD [Prevotella buccae D17]
 gi|288336471|gb|EFC74846.1| ATP-dependent RNA helicase DeaD [Prevotella buccae D17]
          Length = 579

 Score =  196 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 155/448 (34%), Positives = 251/448 (56%), Gaps = 21/448 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  +   TP+Q K IP +L+ +DV G+AQTGTGKTA+++LP+L
Sbjct: 1   MYFDELDLNDNVLDALYDMRFDSCTPVQEKCIPEILKGNDVLGVAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP----FEAQN 116
           + L+ G         +I+ PTRELA Q+    + +G   N   ++ + G      ++ + 
Sbjct: 61  SKLDDGGYPKDAINCVIMSPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQEL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  GADV+I TPGR++ H + G + M+ +   V+DEADRMLDMGF   I  I  L+P 
Sbjct: 121 KSLRLGADVVIATPGRLISHISLGNVDMSKVSYFVLDEADRMLDMGFSEDILQIAKLLPN 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T QT++FSATM  +++++++  L+NP  I++       +  +      Y  Y  +   + 
Sbjct: 181 TCQTIMFSATMPAKIEELAKTLLKNPVEIKLAVSKPAEKIKQE----AYVCYETQKLGII 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + +     +K  IIFC  K  V  +  +L+++  +   +H +++Q  R  I+  FK G +
Sbjct: 237 KDIFKAGDLKRVIIFCGSKMKVKQVNAALQRKHINCGEMHSDLEQAERDDIMFKFKSGQL 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ ARG+DI D+  V N+DVP+ AE+Y+HRIGRT RA R G+A TLV+++DI H
Sbjct: 297 DVLVATDIVARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGRAITLVSEDDIYH 356

Query: 357 IDAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
              IEK +EK+V+   L  DL                +AR++ P   ++T   RR+K+  
Sbjct: 357 FQQIEKFLEKEVEKIPLPADLGE-----------APEYARQSRPSKGRTTAKSRRRKDRD 405

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADS 442
            Q          + ++ +QD +   A  
Sbjct: 406 QQAHRHKPNNQRRPARPEQDKEREAARP 433


>gi|254476293|ref|ZP_05089679.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
 gi|214030536|gb|EEB71371.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
          Length = 501

 Score =  196 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 211/492 (42%), Positives = 300/492 (60%), Gaps = 37/492 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T
Sbjct: 3   KFSDLNLNPKVLKAIEEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMIT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ NLT ALLIGG+ F+ Q+  +++
Sbjct: 63  LLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLNLTKALLIGGVSFKEQDALIDK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKL++++++++V+DEADRMLDMGFIP I+ I  L PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI------EHCFVATYAQYSKKCALL 235
            FSATM  E+++++  FL  P+RIEV   ++T+E I                  K+  L 
Sbjct: 183 FFSATMAPEIERITNTFLSAPERIEVARQATTSENITQGVVLFKASRRDREGSEKRKLLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             + Q  +   N IIFCN+K +V     SL+K G++   IHG++DQ  RMK L  F+EG 
Sbjct: 243 HLIDQEGEKCTNAIIFCNRKTDVDICAKSLKKYGYNAAPIHGDLDQSQRMKTLDEFREGN 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VASD+AARGLD+P V HVFNFDVP+ AE+Y+HRIGRTGRAGR G A  +   +D K
Sbjct: 303 LRFLVASDVAARGLDVPTVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGTAMMICVPKDEK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLE-------------------------------K 384
           +++ IE+L+++++  +           +                               K
Sbjct: 363 NLEDIERLVQQEIPRIENPFKKAKADPKAKADAKAQDTAEAKDGETTERKTRSRRSSRSK 422

Query: 385 IDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLG 444
               +   A + N +  K+    + ++  ++ +     K ++K    +     ND   +G
Sbjct: 423 DAAKEETTAVEANVVEAKAAEPAKTEEPKAANRGKPDQKGNQKSKNNRGRGNNNDRVVVG 482

Query: 445 FRGNMPAFMLPK 456
              +MP+F+   
Sbjct: 483 MGDHMPSFIALS 494


>gi|282860072|ref|ZP_06269153.1| ATP-dependent RNA helicase DeaD family protein [Prevotella bivia
           JCVIHMP010]
 gi|282587160|gb|EFB92384.1| ATP-dependent RNA helicase DeaD family protein [Prevotella bivia
           JCVIHMP010]
          Length = 589

 Score =  196 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 149/473 (31%), Positives = 241/473 (50%), Gaps = 23/473 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  + + TP+Q + IP +L+  D+  +AQTGTGKTA+++LP+L
Sbjct: 1   MYFDELDLNDNVLDALYDMHFDECTPVQEQCIPHILKGKDILAVAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP----FEAQN 116
           + L  G         LI+ PTRELA Q+    + +    N    + + G      ++ + 
Sbjct: 61  SKLADGGYPEDAINCLIMSPTRELAQQIDQGMQGFSYYLNGVSCVAVYGGNDGNRYDQEI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  GADV+I TPGR + H + G + ++ +   V+DEADRMLDMGF   I+ I   +P 
Sbjct: 121 KSLALGADVIIATPGRFISHISLGNVDLSKVSFFVLDEADRMLDMGFSEDIKTIAKKLPS 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T QT++FSATM  +++ +++  L+ P+ +++       +       + Y  Y  +   + 
Sbjct: 181 TCQTIMFSATMPSKIEDLAKTLLKEPEMVKLAVSKPAEKI----QQSAYVCYETQKIEII 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + +     +   IIF   K+ V  +  SL ++  +   +H ++DQ  R  ++  FK G I
Sbjct: 237 KDIFKAGDLHRVIIFSGSKQKVKQIASSLNRKHINCGEMHSDLDQAQRDDVMFKFKSGQI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ ARG+DI D+  V N+DVP+  E+Y+HRIGRT RA R G A T V  +DI +
Sbjct: 297 DVLVATDIVARGIDIDDITMVINYDVPHDVEDYVHRIGRTARADRDGVAITFVNGDDIYY 356

Query: 357 IDAIEKLIEKKVD---------WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
              IE  +EK ++               S+  P   K    +  H R       K + + 
Sbjct: 357 FQQIESFLEKTIEKNRLPEALGEGPEYKSNGRPSKNKKAKNRRRHDRDQQSHKDKKSNY- 415

Query: 408 RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
           RR KN   Q +    KE  K         E  ++ +  +GN+P       +GK
Sbjct: 416 RRVKNRQEQPAPTDEKEQHKPQ-----TSEKKSEKVQDKGNIPEVGATAEQGK 463


>gi|92117844|ref|YP_577573.1| DEAD/DEAH box helicase-like [Nitrobacter hamburgensis X14]
 gi|91800738|gb|ABE63113.1| DEAD/DEAH box helicase-like protein [Nitrobacter hamburgensis X14]
          Length = 487

 Score =  195 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 235/489 (48%), Positives = 308/489 (62%), Gaps = 32/489 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS KV+ AV  AGY  PTPIQ + IP VL   DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MSFSHLGLSDKVLAAVAAAGYTAPTPIQDQAIPHVLAHRDVLGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV ++F+KYG    L VALLIGG+ F  Q+ KL 
Sbjct: 61  TLLEKGRARARMPRTLILEPTRELAAQVKESFDKYGVGQKLNVALLIGGVSFGDQDMKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG LL+  +E+LVIDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM +E+++V++ FL NP++IEV+ P++ A T+    V+   +  +K  LL++LL+
Sbjct: 181 LFFTATMPNEIRRVTDAFLHNPEKIEVSRPATAAATVAQSQVSCGREAHEKRELLRRLLR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +KN IIFCN+K++V  +  SL+K GFSV A+HG++DQ +R   L  F++G + L+V
Sbjct: 241 DAKDLKNAIIFCNRKRDVAIVYKSLQKHGFSVGALHGDMDQSARTASLDQFRKGELPLLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HV NFDVP+  ++Y+HRIGRTGRAGR G A T+V   D K + AI
Sbjct: 301 ASDVAARGLDIPEVSHVLNFDVPHHPDDYVHRIGRTGRAGRTGTAITIVCSADFKSVAAI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDI------------AQHNHARKNNPIPQKSTGFDR 408
           EKL  + +     DL   +   ++               A+  HAR          G   
Sbjct: 361 EKLTGQAIP--KADLPGYDAHADETAADSGADAAHAGRPARSRHARDKGGETHARGGTRE 418

Query: 409 RKKNYSSQKSHIPLKESEK-----------------ISKLQQDIQENDADSLGFRGNMPA 451
            +K     +      +  +                 I +      E  ++  G   ++PA
Sbjct: 419 GRKPRRESRRSGSDHQRHEAPAATAAASMAAPQPPSIGRAPSPRHEAVSEP-GDHSHLPA 477

Query: 452 FMLPKNRGK 460
           F+L   R +
Sbjct: 478 FLLRPIRAR 486


>gi|39935543|ref|NP_947819.1| ATP-dependent RNA helicase [Rhodopseudomonas palustris CGA009]
 gi|192291134|ref|YP_001991739.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
 gi|39649396|emb|CAE27918.1| possible ATP-dependent RNA helicase [Rhodopseudomonas palustris
           CGA009]
 gi|192284883|gb|ACF01264.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 472

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 221/368 (60%), Positives = 278/368 (75%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS KV  AV  AGYV PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML
Sbjct: 1   MSFSNLGLSEKVQAAVAAAGYVSPTPIQQQAIPHVLARKDVLGIAQTGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+LEKGRAR RMPRTLILEPTRELAAQV + F+KYG    L VALLIGG+ F  Q+ KL 
Sbjct: 61  TMLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLT 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDH  RG LL+  +E+L+IDEADRMLDMGFIP I+ I  LVPFTRQT
Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVEMLIIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L F+ATM  E+++++E FL NP++IEV+ P+STA T+    V    +  +K   L++L++
Sbjct: 181 LFFTATMPTEIRRITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRRLIR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +KN IIFCN+K+ V  L  SL++ GFSV A+HG++DQ +R   L  F++G + ++V
Sbjct: 241 GATDLKNAIIFCNRKREVALLAKSLQRHGFSVGALHGDMDQTARTAALEAFRKGDLPILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIP+V HVFNFDVP+  ++Y+HRIGRTGRAGR G A T+VA  D K + A+
Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRTGTAVTIVAPSDQKSMAAV 360

Query: 361 EKLIEKKV 368
           EKLI + +
Sbjct: 361 EKLIGQAI 368


>gi|84516715|ref|ZP_01004073.1| ATP-dependent RNA helicase RhlE [Loktanella vestfoldensis SKA53]
 gi|84509183|gb|EAQ05642.1| ATP-dependent RNA helicase RhlE [Loktanella vestfoldensis SKA53]
          Length = 498

 Score =  195 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 201/489 (41%), Positives = 281/489 (57%), Gaps = 34/489 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D+ L PKV+ AV + GY  PTPIQ   IP  L+  DV GIAQTGTGKTA+F LPM+T
Sbjct: 3   KFSDMNLDPKVLKAVAETGYDTPTPIQDGAIPPALEGRDVLGIAQTGTGKTAAFTLPMIT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K   LT ALLIGG  F+ Q+K +++
Sbjct: 63  LLGRGRARARMPRSLVLAPTRELAAQVAENFDTYAKYTKLTKALLIGGTSFKDQDKLIDK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDH  RGKL++ +++I+V+DEADRMLDMGFIP I+ I    PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHLERGKLILTDVKIMVVDEADRMLDMGFIPDIEEIFKRTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRI------EVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            FSATM  E+++++  FL NP ++        N        +            K+  L 
Sbjct: 183 FFSATMAPEIERITNTFLSNPAKVEVARAATTNVNIKQGVVMFRASAKLREATEKRALLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +    D   N IIFCN+K +V  +  SL K G+    IHG+++Q  R + L +F++  
Sbjct: 243 ALINAEGDACSNAIIFCNRKADVDVVAKSLNKYGYDAAPIHGDLEQSHRTRTLESFRDNK 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VASD+AARGLDIP V HVFNFDVP+ AE+Y+HRIGRTGRAGR G A  + +  D K
Sbjct: 303 LRFLVASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRIGRTGRAGRSGVAIMICSGRDEK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN----------------------HA 393
           +++ +E+L++  +  L+  L    P  E+                              A
Sbjct: 363 NLEDVERLVQNPIPRLDNPLGVTAPVAEEATEEAPKRSRSRSRRGAATDTPAAPAPVEAA 422

Query: 394 RKNNPIPQKSTGFDRRKKNYSSQKSHIPLK------ESEKISKLQQDIQENDADSLGFRG 447
             + PI         +      Q++  P +        ++     QD ++N    +G   
Sbjct: 423 AVDAPIATPVAAPVEKPAEPQQQRAPRPPRDEPAKPRDDQPRARYQDRRDNGPRIIGLGD 482

Query: 448 NMPAFMLPK 456
           + P+F+   
Sbjct: 483 DTPSFIAKS 491


>gi|114327981|ref|YP_745138.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
 gi|114316155|gb|ABI62215.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
          Length = 763

 Score =  195 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 216/456 (47%), Positives = 279/456 (61%), Gaps = 10/456 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V  A+ + GY+ PTPIQ + IP+VL   DV G AQTGTGKTASF LPM+ I
Sbjct: 225 FADLGLSEPVQRAITEMGYLHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMMDI 284

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   RAR RMPR+LILEPTRELA QVA+NF KYG+   L  ALLIGG     Q   L +G
Sbjct: 285 LSDRRARARMPRSLILEPTRELALQVAENFVKYGQYLKLNHALLIGGESMNDQRDVLSKG 344

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR++D F+RG LL+ +  ILVIDEADRMLDMGFIP ++ I SL+P  RQTL 
Sbjct: 345 VDVLIATPGRLIDLFDRGGLLLTDTRILVIDEADRMLDMGFIPDVERIVSLLPHNRQTLF 404

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++++++ FLQNPK I V  P+S A TI            +K     + L  Q
Sbjct: 405 FSATMAPEIRRLADAFLQNPKEITVAKPASVATTITSGLALVGEMDKRKA---LRHLLRQ 461

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           + ++N +IFCN+K++V  L  SL K GF+   +HG++ Q  R   L  FK G++QL+V S
Sbjct: 462 EKVQNALIFCNRKRDVDILTKSLVKHGFAAGPLHGDLAQSLRFSTLEKFKAGSLQLLVCS 521

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HVFNFDVP  AE+Y+HRIGRTGRAGR G AFTL + +D   +DAIEK
Sbjct: 522 DVAARGIDIGGLSHVFNFDVPIHAEDYVHRIGRTGRAGREGAAFTLASPDDKFAVDAIEK 581

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQH-NHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           LI   +  +  +       LE+ + ++  N  R       K    + R  +     +   
Sbjct: 582 LINAPIPRIEIE------GLERAEWSEEPNRGRGRRHKNGKGGKGNNRYGSRGQDNARKD 635

Query: 422 LKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
              +E  +K Q DI  +    +      PA   P  
Sbjct: 636 RAFTEADAKSQADITPDPVAEVATTQPAPAPAQPTQ 671


>gi|77463091|ref|YP_352595.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides 2.4.1]
 gi|77387509|gb|ABA78694.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides 2.4.1]
          Length = 518

 Score =  195 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 210/402 (52%), Positives = 278/402 (69%), Gaps = 8/402 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L P+V+ AV +AGY  PTPIQ + IP  L+  DV GIAQTGTGKTASF LPM+T
Sbjct: 5   KFSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMIT 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  L+ ALLIGG+ F  Q+K ++R
Sbjct: 65  ILGKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDR 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL
Sbjct: 125 GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH------CFVATYAQYSKKCALL 235
            +SATM  E+++++  FL    +IEV   ++T+ETIE             +   K+  L 
Sbjct: 185 FYSATMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKERSFADKRAVLR 244

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +    +   N IIFCN+K +V  +  SL++ GF+   IHG+++Q  RMK L  F++G+
Sbjct: 245 ALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDGFRDGS 304

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + L+VASD+AARGLDIP V HVFNFDVP   E+Y+HRIGRTGRAGR GKA+T+    D K
Sbjct: 305 LHLLVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKGKAYTIAVPSDEK 364

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           H+ AIE L+++ +    G+L       ++ D  + ++AR   
Sbjct: 365 HVTAIESLVKQAIPR--GELPEGFSLEDRPDRPERDNARGER 404


>gi|315608792|ref|ZP_07883768.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae
           ATCC 33574]
 gi|315249486|gb|EFU29499.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae
           ATCC 33574]
          Length = 579

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 154/448 (34%), Positives = 250/448 (55%), Gaps = 21/448 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  +   TP+Q K IP +L+ +DV G+AQTGTGKTA+++LP+L
Sbjct: 1   MYFDELDLNDNVLDALYDMRFDSCTPVQEKCIPEILKGNDVLGVAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP----FEAQN 116
           + L+ G         +I+ PTRELA Q+    + +G   N   ++ + G      ++ + 
Sbjct: 61  SKLDDGGYPKDAINCVIMSPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQEL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  GADV+I TPGR++ H + G + M+ +   V+DEADRMLDMGF   I  I  L+P 
Sbjct: 121 KSLRLGADVVIATPGRLISHISLGNVDMSKVSYFVLDEADRMLDMGFSEDILQIAKLLPD 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T QT++FSATM  +++++++  L+NP  I++       +  +      Y  Y  +   + 
Sbjct: 181 TCQTIMFSATMPAKIEELAKTLLKNPVEIKLAVSKPAEKIKQE----AYVCYETQKLGII 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + +     +K  IIFC  K  V  +  +L+++  +   +H +++Q  R  I+  FK G +
Sbjct: 237 KDIFKAGDLKRVIIFCGSKMKVKQVNAALQRKHINCGEMHSDLEQAERDDIMFKFKSGQL 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ ARG+DI D+  V N+DVP+ AE+Y+HRIGRT RA R G+A TLV+++DI H
Sbjct: 297 DVLVATDIVARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGRAITLVSEDDIYH 356

Query: 357 IDAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
              IEK +EK+V+   L  DL                + R++ P   ++T   RR+K+  
Sbjct: 357 FQQIEKFLEKEVEKIPLPADLGE-----------APEYTRQSRPSKGRTTAKSRRRKDRD 405

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADS 442
            Q          + ++ +QD +   A  
Sbjct: 406 QQAHRHKPNNQRRPARPEQDKEREAARP 433


>gi|221638948|ref|YP_002525210.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides KD131]
 gi|221159729|gb|ACM00709.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides KD131]
          Length = 524

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 210/402 (52%), Positives = 277/402 (68%), Gaps = 8/402 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L P+V+ AV +AGY  PTPIQ + IP  L+  DV GIAQTGTGKTASF LPM+T
Sbjct: 3   KFSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMIT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  L+ ALLIGG+ F  Q+K ++R
Sbjct: 63  ILGKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH------CFVATYAQYSKKCALL 235
            +SATM  E+++++  FL    +IEV   ++T+ETIE             +   K+  L 
Sbjct: 183 FYSATMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKERSFADKRAVLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +    +   N IIFCN+K +V  +  SL++ GF+   IHG+++Q  RMK L  F++G+
Sbjct: 243 ALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDGFRDGS 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + L+VASD+AARGLDIP V HVFNFDVP   E+Y+HRIGRTGRAGR GKA+T+    D K
Sbjct: 303 LHLLVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKGKAYTIAVPSDEK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           H+ AIE L+++ +    G+L       ++ D  + + AR   
Sbjct: 363 HVTAIESLVKQAIPR--GELPEGFSLEDRPDRPERDSARGER 402


>gi|126461963|ref|YP_001043077.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126103627|gb|ABN76305.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 516

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 210/402 (52%), Positives = 277/402 (68%), Gaps = 8/402 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L P+V+ AV +AGY  PTPIQ + IP  L+  DV GIAQTGTGKTASF LPM+T
Sbjct: 3   KFSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMIT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  L+ ALLIGG+ F  Q+K ++R
Sbjct: 63  ILGKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH------CFVATYAQYSKKCALL 235
            +SATM  E+++++  FL    +IEV   ++T+ETIE             +   K+  L 
Sbjct: 183 FYSATMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKERSFADKRAVLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +    +   N IIFCN+K +V  +  SL++ GF+   IHG+++Q  RMK L  F++G+
Sbjct: 243 ALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDGFRDGS 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + L+VASD+AARGLDIP V HVFNFDVP   E+Y+HRIGRTGRAGR GKA+T+    D K
Sbjct: 303 LHLLVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKGKAYTIAVPSDEK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           H+ AIE L+++ +    G+L       ++ D  + + AR   
Sbjct: 363 HVTAIESLVKQAIPR--GELPEGFSLEDRPDRPERDSARGER 402


>gi|163795533|ref|ZP_02189499.1| Superfamily II DNA and RNA helicase [alpha proteobacterium BAL199]
 gi|159179132|gb|EDP63665.1| Superfamily II DNA and RNA helicase [alpha proteobacterium BAL199]
          Length = 521

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 204/411 (49%), Positives = 281/411 (68%), Gaps = 7/411 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGLS +VV AV+ +GY KPTPIQ K IP VL   DV G AQTGTGKTASF LPM+
Sbjct: 6   VTFADLGLSDEVVSAVVTSGYTKPTPIQEKAIPYVLMGRDVLGCAQTGTGKTASFTLPMI 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  GRA+ RMPR+LI+ PTRELAAQV++NF KYG+N  L++ALLIGG+    Q  KL+
Sbjct: 66  DILSAGRAKARMPRSLIIAPTRELAAQVSENFVKYGQNTRLSMALLIGGVSMGDQEAKLD 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDHF RG++L+ +++ILVIDEADRMLDMGFIP ++ I SL+P  RQT
Sbjct: 126 RGVDVLIATPGRLLDHFERGRILLTDVKILVIDEADRMLDMGFIPDVERIVSLLPTIRQT 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++++++ FL NPK + V+ P+S AE +    V       K      + L 
Sbjct: 186 LFFSATMAPEIKRLADKFLMNPKEVSVDAPASAAENVAQHLVRCSV---KDKRDALRSLL 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +T+ + +IFCN+K+++  L  SL++ G     +HG++ Q +R + L+ FK G  +L++
Sbjct: 243 KSETVDSALIFCNRKRDIGVLHRSLQRYGIEAVQLHGDMSQPARTETLAKFKAGEARLVI 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SD+AARG+DI  + HVFNFDVP+ AE+Y+HRIGRTGRAG  G+AFTL   ED K + A+
Sbjct: 303 CSDVAARGIDIKGLSHVFNFDVPSHAEDYVHRIGRTGRAGLSGRAFTLATPEDSKLLSAV 362

Query: 361 EKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           E+LI  K+  +  D     ++ + P E +++A   +  +     + +   D
Sbjct: 363 ERLIGMKIPVIQLDGAAPAAAESRPAETVELASETNPPRKTGRGRGARSND 413


>gi|163738820|ref|ZP_02146234.1| ATP-dependent RNA helicase, putative [Phaeobacter gallaeciensis
           BS107]
 gi|163741469|ref|ZP_02148860.1| ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis 2.10]
 gi|161385203|gb|EDQ09581.1| ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis 2.10]
 gi|161388148|gb|EDQ12503.1| ATP-dependent RNA helicase, putative [Phaeobacter gallaeciensis
           BS107]
          Length = 516

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 212/462 (45%), Positives = 291/462 (62%), Gaps = 15/462 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L+PKV+ A+ +AGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T
Sbjct: 3   KFSDLNLNPKVLKAIEEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMIT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+  +++
Sbjct: 63  LLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDTLIDK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKL++++++++V+DEADRMLDMGFIP I+ I  L PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI------EHCFVATYAQYSKKCALL 235
            FSATM  E+++++  FL  P R+EV   ++T+E I                  K+  L 
Sbjct: 183 FFSATMAPEIERITNTFLSAPARVEVARQATTSENITQGVVLFKASRRDREGSEKRKLLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             + Q  +   N IIFCN+K +V  +  SL+K G+    IHG++DQ  R K L  F+EG+
Sbjct: 243 HLIDQEGEKCTNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFREGS 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VASD+AARGLD+P V HVFNFDVP+ AE+Y+HRIGRTGRAGR G A  +   +D K
Sbjct: 303 LRFLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGSAMMICVPKDEK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPL----EKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           +++ IE+L++ ++  +   L            K D +     RK       +     +  
Sbjct: 363 NLEDIERLVQNEIPRIENPLKKAKAEPKAKDSKDDASSETTERKTRSRRPSARSSAAKDV 422

Query: 412 NYS----SQKSHIPLKESEKISKLQQDI-QENDADSLGFRGN 448
           N S    +Q S  P  E +  ++ Q+   QE  A   G    
Sbjct: 423 NESADAQAQISDAPSAEVDAPAQEQKAPEQEKRASGRGKPAE 464


>gi|332557965|ref|ZP_08412287.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides WS8N]
 gi|332275677|gb|EGJ20992.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides WS8N]
          Length = 516

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 210/402 (52%), Positives = 276/402 (68%), Gaps = 8/402 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L P+V+ AV +AGY  PTPIQ + IP  L+  DV GIAQTGTGKTASF LPM+T
Sbjct: 3   KFSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMIT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  L+ ALLIGG+ F  Q+K ++R
Sbjct: 63  ILGKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH------CFVATYAQYSKKCALL 235
            +SATM  E+++++  FL    +IEV   ++T+ETIE             +   K+  L 
Sbjct: 183 FYSATMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKERSFADKRAVLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +    +   N IIFCN+K +V  +  SL++ GF+   IHG+++Q  RMK L  F++G+
Sbjct: 243 ALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDGFRDGS 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + L+VASD+AARGLDIP V HVFNFDVP   E+Y+HRIGRTGRAGR GKA+T+    D K
Sbjct: 303 LHLLVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKGKAYTIAVPSDEK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           H+ AIE L+++ +    G+L       ++ D    + AR   
Sbjct: 363 HVTAIESLVKQAIPR--GELPEGFSLEDRPDRPDRDSARGER 402


>gi|253698823|ref|YP_003020012.1| DEAD/DEAH box helicase [Geobacter sp. M21]
 gi|251773673|gb|ACT16254.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
          Length = 449

 Score =  193 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 163/448 (36%), Positives = 244/448 (54%), Gaps = 3/448 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F  L LS  ++ A+   GY +PTPIQ ++IPL L   D+ G AQTGTGKTASFVLP +
Sbjct: 1   MSFETLNLSAPILKAIQACGYTQPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L     R + PR L+L PTRELA QV D    YGK   +    ++GG+P+  Q   L
Sbjct: 61  ERLLTPSPLRGKGPRILVLTPTRELAIQVVDAVRSYGKFMRVRCGSILGGMPYRDQMMLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++DH +R  +  + +E+LV+DEADRMLDMGF   +  I    P  RQ
Sbjct: 121 AQPVDIIVATPGRLIDHLDRRSINFSRLEMLVLDEADRMLDMGFSDDVDRIADAAPAERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLF+ATM D + K+++  L++P R+ V         IE     T     K    L Q L
Sbjct: 181 TLLFTATMDDAMAKLAQRLLKDPVRVAVEGTEVANLQIEQRLHVTDDMRHKNR--LLQHL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S  ++   IIF   KK+   L   L  QG +  A+HG++ Q +R K ++N + G ++L+
Sbjct: 239 VSDASVTKAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNKTITNMRRGKVRLL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P  AE+Y+HRIGRTGRAG  G A +  +  ++ ++D 
Sbjct: 299 VATDVAARGLDVTGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMNEVAYLDR 358

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+   KK+     +      PL + +       +       +  GF  + ++    +  
Sbjct: 359 IERFTGKKLPMHVVEGFEPTRPLRRGNSGAPGARKGRPSFDPRKKGFAPKGRSDQGGRPG 418

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRG 447
              +  +  +  ++D Q       G  G
Sbjct: 419 HSGRPGQGANGGRRDNQVVVEYRRGQGG 446


>gi|282878371|ref|ZP_06287163.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
           35310]
 gi|281299557|gb|EFA91934.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
           35310]
          Length = 558

 Score =  193 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 150/454 (33%), Positives = 239/454 (52%), Gaps = 18/454 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  +   TP+Q K IP +L+  DV G+AQTGTGKTA+++LP++
Sbjct: 1   MKFEELELNNNVLDALYDMRFDTCTPVQEKCIPEILKGRDVLGVAQTGTGKTAAYLLPIM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP----FEAQN 116
           + ++ G         LI+ PTRELA Q+    + +G       ++ + G      ++ + 
Sbjct: 61  SKIDSGNYPEDAINCLIMSPTRELAQQIDQAMQGFGYYLQGVSSVAVYGGNDGNRYDQEL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  GADV+I TPGR + H + G + ++ +   V+DEADRMLDMGF   I  I   +P 
Sbjct: 121 KSLRMGADVVIATPGRFISHMSLGNVDLSKVSFFVLDEADRMLDMGFSEDIMTIAKGLPK 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T QT++FSATM D++ +      +   +  V    + ++  E      Y  +  +   + 
Sbjct: 181 TCQTIMFSATMPDKINE----LARTLLKNPVEVKLAVSKPAEKIKQTAYVCHETQKLGII 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + +  Q  +K  IIFC  K+ V  +  +L++   +   +H ++DQ  R +++  FK G I
Sbjct: 237 KKIFKQGDLKRVIIFCGAKQKVKQVSQALQRMKINCGEMHSDLDQAQRDEVMFQFKSGQI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ +RG+DI D+  V N+DVP+ AE+Y+HRIGRT RA R G A TLV+K+DI +
Sbjct: 297 DVLVATDILSRGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGAAITLVSKDDIYY 356

Query: 357 IDAIEKLIEKKVDWLN--------GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
              IEK +EK+V+ +          D ++   P  K   A+    R+ N          R
Sbjct: 357 FQQIEKFLEKEVEKVELPEELGEAPDYTADGKPQRKRSSAK--SVRRKNRDQTAHKRKPR 414

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADS 442
           R KN    K      E     + Q+  +  D   
Sbjct: 415 RNKNEQRPKEVDAKSEQTNEKQAQERSKTADKQP 448


>gi|304319730|ref|YP_003853373.1| hypothetical protein PB2503_00757 [Parvularcula bermudensis
           HTCC2503]
 gi|303298633|gb|ADM08232.1| hypothetical protein PB2503_00757 [Parvularcula bermudensis
           HTCC2503]
          Length = 460

 Score =  193 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 220/456 (48%), Positives = 294/456 (64%), Gaps = 15/456 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++LGL  K++ A+ ++GY  PTPIQ   IP  L+  DV GIAQTGTGKTASFVLP++ 
Sbjct: 15  TFSELGLDTKILEALTESGYTHPTPIQADAIPEALRGRDVLGIAQTGTGKTASFVLPVIH 74

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +GRAR RMPR+LIL PTRELAAQV++ FEKYGKN+ L++ALLIGG+ F  Q+ KL R
Sbjct: 75  RLARGRARARMPRSLILAPTRELAAQVSEQFEKYGKNHKLSMALLIGGVSFADQDAKLTR 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDH  RGKLL+  +E++V+DEADRMLDMGFIP ++ I  L PFTRQTL
Sbjct: 135 GVDVLIATPGRLLDHHERGKLLLTGLEVMVVDEADRMLDMGFIPDLERIFKLTPFTRQTL 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL-LQ 240
            FSATM  E+Q++++ FL  P RIEV  P++TA+TI        +   K      +  ++
Sbjct: 195 FFSATMPPEIQRLTDQFLSAPARIEVAKPATTAKTITQRIARLPSGEDKLKRAALRHLVE 254

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + +KNGIIFCN+KKNV  +  SL++ GF    IHG++ Q  R + L  F++G ++L+V
Sbjct: 255 TAENLKNGIIFCNRKKNVDVIAKSLQEHGFDARPIHGDLPQSFRTETLQMFRDGGLKLLV 314

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDIPDV HVFNF VP  A++Y+HRIGRTGRAGR G A  LV  +D K  DA+
Sbjct: 315 ASDVAARGLDIPDVSHVFNFSVPINADDYVHRIGRTGRAGRLGHAVMLVTPDDGKAFDAV 374

Query: 361 EKLIE-KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
            K+    K++    D+S+L   L+  + A           P+K     R   N     S 
Sbjct: 375 LKVTGLDKIEE--HDISAL---LDDWNGAARP--------PEKGRNNRRGGPNKKEASSS 421

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLP 455
            P     +  +  +         +GF  + P F+L 
Sbjct: 422 RPTSNKGRDRRDDRHDDGPADPVVGFGDHTPDFLLK 457


>gi|149204620|ref|ZP_01881585.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. TM1035]
 gi|149141879|gb|EDM29929.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. TM1035]
          Length = 506

 Score =  192 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 211/497 (42%), Positives = 291/497 (58%), Gaps = 42/497 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L+PKV+ A+ +AGY  PTPIQ + IP  L   DV GIAQTGTGKTASF LPML+
Sbjct: 3   KFSDLNLNPKVLKAIEEAGYETPTPIQAEAIPHALVGRDVLGIAQTGTGKTASFTLPMLS 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+K +++
Sbjct: 63  LLSRGRARARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQDKLIDK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET------IEHCFVATYAQYSKKCALL 235
            FSATM  E+++++  FL NP R+EV   ++ +ET      +        A   K+  L 
Sbjct: 183 FFSATMAPEIERITNTFLSNPARVEVARQATASETIEQGVVMFKPSRRENADSEKRKLLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             + +      N IIFCN+K +V  +  SL K G+    IHG++DQ  R + L  F+ GT
Sbjct: 243 ALIDREGAACSNAIIFCNRKIDVDVVAKSLIKYGYDAAPIHGDLDQSQRTRTLDGFRAGT 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ ++ASD+AARGLD+P V HVFNFDVP+ AE+Y+HRIGRTGRAGR GKA  +    D K
Sbjct: 303 LRFLIASDVAARGLDVPAVSHVFNFDVPSHAEDYVHRIGRTGRAGRSGKALMICNPRDEK 362

Query: 356 HIDAIEKLIEKKVDWLN----------------GDLSSLNPPL----------EKIDIAQ 389
           ++  +E LI+K++  +                 G       P           E+   A 
Sbjct: 363 NLAGVEALIQKEIPRVESPVTFTPPTTETEPPQGSEERPAKPRRARNVSRGKPEERPAAS 422

Query: 390 HNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLK----------ESEKISKLQQDIQEND 439
           H      +    ++T    R +    +++  P +                   +      
Sbjct: 423 HKAPETVSEQAVEATPPQERPQERRPERTPEPRQDRNRDRNDDNAPRHREGRGRQDHGGG 482

Query: 440 ADSLGFRGNMPAFMLPK 456
              +G   ++P+F+   
Sbjct: 483 PRVMGLGDHLPSFIALS 499


>gi|146278024|ref|YP_001168183.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145556265|gb|ABP70878.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 507

 Score =  192 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 217/480 (45%), Positives = 297/480 (61%), Gaps = 25/480 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L P+V+ AV +AGY  PTPIQ + IP  L+  DV GIAQTGTGKTASF LPM+T
Sbjct: 3   KFSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMIT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  L+ ALLIGG+ F  Q+K ++R
Sbjct: 63  ILGKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE------TIEHCFVATYAQYSKKCALL 235
            +SATM  E+++++  FL    +IEV   ++T+E                +   K+  L 
Sbjct: 183 FYSATMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQITPTRKERSFADKRAVLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +    +   N IIFCN+K +V  +  SL++ GF+   IHG++DQ  R K L  F++GT
Sbjct: 243 ALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLDQSQRTKTLDGFRDGT 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + L+VASD+AARGLDIP V HVFNFD+P   E+Y+HRIGRTGRAGR GKAF++    D K
Sbjct: 303 LHLLVASDVAARGLDIPAVSHVFNFDLPTHPEDYVHRIGRTGRAGRKGKAFSIAVPSDEK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS- 414
           ++ AIE L+++ +    G+L       ++ D  +   AR   P   +      R +    
Sbjct: 363 YLAAIESLVKQAIPR--GELPEGFSLEDRPDRPERESARGERPGRSRRGRDRERDRREEP 420

Query: 415 ---------SQKSHIPLKESEKIS-------KLQQDIQENDADSLGFRGNMPAFMLPKNR 458
                    ++   +P++E            + ++D    D   +G   ++P F+L   R
Sbjct: 421 RAEAVEPAVAEVPEVPVREERAPKRDERREDRGRRDRDRRDERVVGMGDHVPDFLLRSFR 480


>gi|303237281|ref|ZP_07323851.1| ATP-dependent RNA helicase DeaD family protein [Prevotella disiens
           FB035-09AN]
 gi|302482668|gb|EFL45693.1| ATP-dependent RNA helicase DeaD family protein [Prevotella disiens
           FB035-09AN]
          Length = 565

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 145/462 (31%), Positives = 241/462 (52%), Gaps = 14/462 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  L L+  ++ A+ D  + K TPIQ   IP +L+  DV G+AQTGTGKTA+++LP+L
Sbjct: 1   MNFESLDLNDDILDALYDMRFEKCTPIQENCIPEILKGKDVLGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP----FEAQN 116
           + L  G         LI+ PTRELA Q+    + +    N    + + G      ++ + 
Sbjct: 61  SKLADGGYPEDAINCLIMSPTRELAQQIDQAIQGFSYYLNGVSCVAVYGGNDGNRYDQEL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  GA+++I TPGR + H + G + ++ +   ++DEADRMLDMGF   I  I   +P 
Sbjct: 121 KSLSLGANLVIATPGRFISHMSLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIQKNLPK 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T QT++FSATM  +++ +++  L NP  I++       +         Y  +  +   + 
Sbjct: 181 TCQTIMFSATMPKKIEDLAQTLLTNPSVIKLAVSKPAEKI----HQLAYVCHETQKMGII 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + +     ++  IIF   K+ V  +  SL ++  +   +H ++ Q  R +++  FK G I
Sbjct: 237 KDIFKAGNLQRVIIFSGSKQKVKQIALSLNQKKINCGQMHSDLAQAERDEMMFKFKSGQI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ ARG+DI D+  V N+DVP+ AE+Y+HRIGRT RA R G A T V ++DI +
Sbjct: 297 DVLVATDILARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRKGSAITFVNEDDIYY 356

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPL-EKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
              IEK +EK+V+      + L   L E +D    N  R+      +      ++ +   
Sbjct: 357 FQQIEKFLEKEVEK-----AELPEGLGEGLDYVSRNKERRKTSAKSRRRKDRDQQSHKDK 411

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
           +  +     ++  +  +   Q+  A+ +    N PA    KN
Sbjct: 412 KVRNNRRNNNQPTATNKTKKQDVKAEKVQEGKNEPAKSYKKN 453


>gi|296536687|ref|ZP_06898752.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
 gi|296262986|gb|EFH09546.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
          Length = 560

 Score =  192 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 202/431 (46%), Positives = 274/431 (63%), Gaps = 5/431 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS  ++  V +AGYV PTPIQ + IP+VL   DV G AQTGTGKTASFVLPM+ I
Sbjct: 107 FEDLGLSEALLRGVAEAGYVHPTPIQEQAIPVVLMGRDVMGCAQTGTGKTASFVLPMMDI 166

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   RA+ RMPR+LILEPTRELA QVA+NF KYG +  L  ALLIGG     Q   L++G
Sbjct: 167 LAGSRAKARMPRSLILEPTRELALQVAENFVKYGTHMKLNHALLIGGESMSDQRDVLDKG 226

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+LD F RG++++ + ++LVIDEADRMLDMGFIP ++ I SL+P  RQTL 
Sbjct: 227 VDVLIATPGRLLDLFERGRVMLADCKVLVIDEADRMLDMGFIPDVERIVSLLPPLRQTLF 286

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++K+++ FLQNPK I V+ P+S A TI         +  ++     + L   
Sbjct: 287 FSATMAPEIRKLADAFLQNPKTISVSAPASVATTITAGLAFVQPEDKRRA---LRRLIRS 343

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             ++N +IFCN+K++V  L  SL K GF   A+HG++ Q  R   L  FK G +QL+V S
Sbjct: 344 QDVQNALIFCNRKRDVDILHKSLSKHGFKAGALHGDLPQSVRFATLEKFKAGELQLLVCS 403

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HV+NFDVP R E+Y+HRIGRTGRAGR G A+T+   +D+K + AIE 
Sbjct: 404 DVAARGIDIGGLSHVYNFDVPFRDEDYVHRIGRTGRAGREGHAYTIATADDVKLVAAIEA 463

Query: 363 LIEKKVDWLNGD-LSSLNP-PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           L  K +  +  + L  + P  L +   A      +     +      R++     +    
Sbjct: 464 LTGKPIPRIEIEGLEPVTPEELAEAASAPKGGRGRGRGDAKGRGKDGRKEAGRREEPRET 523

Query: 421 PLKESEKISKL 431
             +E +++++ 
Sbjct: 524 GRREGKEVARR 534


>gi|159043882|ref|YP_001532676.1| DEAD/DEAH box helicase domain-containing protein [Dinoroseobacter
           shibae DFL 12]
 gi|157911642|gb|ABV93075.1| DEAD/DEAH box helicase domain protein [Dinoroseobacter shibae DFL
           12]
          Length = 493

 Score =  192 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 202/380 (53%), Positives = 266/380 (70%), Gaps = 8/380 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L PKV+ A+ +AGY  PTPIQ + IP  L+  DV GIAQTGTGKTASF LPM+T
Sbjct: 3   KFSDLNLDPKVLKAISEAGYDTPTPIQAEAIPPALEGRDVLGIAQTGTGKTASFTLPMIT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K+  LT ALLIGG+ F+ Q+  +++
Sbjct: 63  MLRKGRARARMPRSLVLAPTRELAAQVAENFDIYAKHTKLTKALLIGGVSFKEQDLLIDK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKL++ +++++V+DEADRMLDMGFIP I+ I  L PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIEKIFQLTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--------QYSKKCA 233
            FSATM  E+++++  FL NP R+EV   S+T+ETI    V               K+  
Sbjct: 183 FFSATMAPEIERITNTFLSNPARVEVARQSTTSETITQGLVQFKPSRRDRATAFKEKREM 242

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L   + +  D  +N IIFCN+K +V  +  SL K G+    IHG+++Q  R K L  F++
Sbjct: 243 LRALIEREGDGCRNAIIFCNRKMDVDVVAKSLIKHGYDAAPIHGDLEQSQRTKTLDQFRD 302

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           GT++ +VASD+AARGLDIP+V HVFNFDVP+ AE+Y+HRIGRTGRAGR G    L    D
Sbjct: 303 GTLKFLVASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRIGRTGRAGRKGTTLMLAVPAD 362

Query: 354 IKHIDAIEKLIEKKVDWLNG 373
            K + AIE L++ ++  +  
Sbjct: 363 DKLLAAIEDLVKLEIPRIEA 382


>gi|313675971|ref|YP_004053967.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312942669|gb|ADR21859.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 439

 Score =  192 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 166/437 (37%), Positives = 255/437 (58%), Gaps = 8/437 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L+ ++  A+ D GY KP+ IQ+K IP +L  HDV GIAQTGTGKTA+FVLP+L 
Sbjct: 7   SFQDFKLNKQLFNAIDDLGYQKPSEIQVKAIPRILNGHDVIGIAQTGTGKTAAFVLPLLM 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +   PR LI+ PTREL  QV +N  + GK  +L    L GGI  + Q +++  
Sbjct: 67  KLKYA--QGHDPRALIIAPTRELVMQVYENILELGKYTDLRTVCLYGGIGPKKQAQEVAE 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR+LD ++ G L    I+  ++DEADRM+DMGF+P I+ +  L+P  +Q L
Sbjct: 125 GCDIIVATPGRLLDIYSAGVLQPKQIKTFILDEADRMMDMGFMPQIRRVLELLPMKKQNL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT  ++++K +  F   P+++EV   + TAE IE          +K    L + L  
Sbjct: 185 FFSATFPEKVEKYAYEFTDFPEKVEVTPETMTAELIEQSLYHVPNFLTK--INLLKYLFE 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQG-FSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +     +IF   +KN  N+   +E++    V  IH N  Q +R+  ++ FK G ++++V
Sbjct: 243 NEDFSRVLIFVRTRKNANNVYSFIERKISEEVRVIHANKAQSTRINAINEFKSGNVRVLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D+ ARG+D+ +V HV NF+VPN+ E+Y+HRIGRTGRA  HG A + V   D+ HI+ I
Sbjct: 303 STDVTARGIDVEEVSHVINFEVPNKYEDYVHRIGRTGRAEHHGIAISFVDPSDVYHINKI 362

Query: 361 EKLIEKKVDW--LNGDLSSLNP-PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           E+LI+KK+    L  ++  ++  P EK D+ Q    +K+   P     F  +KK   S K
Sbjct: 363 EELIQKKIKVIDLPKEIELMDTLPSEKKDMEQEIDRQKHLENPDFQGAFHEKKKKNLSGK 422

Query: 418 SHIPLKESEKISKLQQD 434
           +      ++   K ++ 
Sbjct: 423 ARDKAFGNKPKDKRRKK 439


>gi|282880318|ref|ZP_06289032.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305820|gb|EFA97866.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           timonensis CRIS 5C-B1]
          Length = 583

 Score =  192 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 149/440 (33%), Positives = 247/440 (56%), Gaps = 16/440 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  +   TP+Q K IP +L+  DV G+AQTGTGKTA+++LP+L
Sbjct: 1   MKFEELPLNNNVLDALYDMHFDTCTPVQEKCIPGILKGRDVLGVAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP----FEAQN 116
           + ++           LI+ PTRELA Q+    + +G       ++ + G      ++ + 
Sbjct: 61  SKIDSNNYPDNAINCLIMSPTRELAQQIDQAMQGFGYYLQGVSSVAVYGGNDGNRYDQEV 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  GADV+I TPGR++ H N G + M+ I   V+DEADRMLDMGF   I +I   +P 
Sbjct: 121 KSLRLGADVVIATPGRLISHINMGNIDMSKISFFVLDEADRMLDMGFADDIMSIAKGLPK 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T QT++FSATM D++  ++   L+NP  I++       +  +  ++   AQ  K      
Sbjct: 181 TCQTIMFSATMPDKINDLARTLLKNPVEIKLAVSKPAEKIKQCAYICYEAQKLKII---- 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + +  +  +K  I+FC  K  V  +  +L +   +   +H +++Q  R +++ NFK G +
Sbjct: 237 EDIFKKGDLKRVIVFCGSKLKVKQVAAALHRMNVNCSEMHSDLEQAQRDEVMLNFKSGQL 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ ARG+DI D+  V N+DVPN AE+Y+HRIGRT RA R G+A TLVA++D   
Sbjct: 297 DVLVATDIVARGIDIDDISMVINYDVPNDAEDYVHRIGRTARADRDGQAITLVAQDDTYL 356

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            + IEK + K+V+        +  P    +  ++   R+      K+    R+ +N ++ 
Sbjct: 357 FEQIEKFLGKEVE-------KIQLPEGIGEAPEYTSGRRPQRRGTKAKSIRRKDRNQTAH 409

Query: 417 KSHIPLKESEKISKLQQDIQ 436
           K H P +++++ ++  Q + 
Sbjct: 410 K-HKPRRQNDQQNETSQTVD 428


>gi|322417740|ref|YP_004196963.1| DEAD/DEAH box helicase domain-containing protein [Geobacter sp.
           M18]
 gi|320124127|gb|ADW11687.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18]
          Length = 442

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 167/417 (40%), Positives = 244/417 (58%), Gaps = 11/417 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F  L LS  +V A+   GY +PTPIQ ++IPL L   D+ G AQTGTGKTASFVLP +
Sbjct: 1   MSFESLNLSAPLVKAINACGYTEPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L    AR + PR L+L PTRELA QV D  + YGK   +    ++GG+P+  Q   L
Sbjct: 61  ERLLVPSPARGKGPRILVLTPTRELANQVVDAVKTYGKFMRVRCGSILGGMPYREQMMLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++DH +R  +  + +E+LV+DEADRMLDMGF   +  I +  P  RQ
Sbjct: 121 SQPVDIIVATPGRLIDHLDRRSINFSRLEMLVLDEADRMLDMGFSEDVDRIAAAAPAERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLF+ATM D + K+++  L++P R+ V+    T  +IE     T     K    L Q L
Sbjct: 181 TLLFTATMDDAMAKLAQRLLKDPVRVAVDGQQLTNLSIEQRLHVTDDMRHKNR--LLQHL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +  ++   IIF   KK+   L   L  QG +  A+HG++ Q +R + ++N + G ++L+
Sbjct: 239 VADASVTKAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNRTITNMRRGKVRLL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P  AE+Y+HRIGRTGRAG  G A +  +  ++ ++D 
Sbjct: 299 VATDVAARGLDVSGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMNEVAYLDR 358

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           IE+L  K +      +  L P       +    ARK  P       FD RKK ++ +
Sbjct: 359 IERLTGKPLP--QHVIEGLEPSRPLRRNSGGPGARKGRP------SFDPRKKGFAPK 407


>gi|197116587|ref|YP_002137014.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
 gi|197085947|gb|ACH37218.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
          Length = 453

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 170/460 (36%), Positives = 250/460 (54%), Gaps = 12/460 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F  L LS  ++ A+   GY +PTPIQ ++IPL L   D+ G AQTGTGKTASFVLP +
Sbjct: 1   MSFETLNLSAPILKAIQACGYTQPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L     R + PR L+L PTRELA QV D    YGK   +    ++GG+P+  Q   L
Sbjct: 61  ERLLTPSPLRGKGPRILVLTPTRELAIQVVDAVRSYGKFMRVRCGSILGGMPYRDQMMLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++DH +R  +  + +E+LV+DEADRMLDMGF   +  I +  P  RQ
Sbjct: 121 AQPVDIIVATPGRLIDHLDRRSINFSRLEMLVLDEADRMLDMGFSEDVDRIANAAPAERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLF+ATM D + K+++  L++P R+ V         IE     T     K    L Q L
Sbjct: 181 TLLFTATMDDAMAKLAQRLLKDPVRVAVEGTEVANLQIEQRLHVTDDMRHKNR--LLQHL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S  ++   IIF   KK+   L   L  QG +  A+HG++ Q +R K ++  + G ++L+
Sbjct: 239 VSDASVTKAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNKTITMMRRGKVRLL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P  AE+Y+HRIGRTGRAG  G A +  +  ++ ++D 
Sbjct: 299 VATDVAARGLDVTGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMNEVVYLDR 358

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+   KK+     +      PL + +      ARK  P       FD RKK ++ +   
Sbjct: 359 IERFTGKKLPMHVVEGFEPTRPLRRGNSGAPG-ARKGRP------SFDPRKKGFAPKGRS 411

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRG 459
              +  +  S      +     + G R N       + +G
Sbjct: 412 DQGRSDQGRSGYA--GRSGQGATAGRRDNQVVVEYRRGQG 449


>gi|217970063|ref|YP_002355297.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
 gi|217507390|gb|ACK54401.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
          Length = 545

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 179/476 (37%), Positives = 263/476 (55%), Gaps = 17/476 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGL P+++ AV DAGY +PTPIQ + IP+V+   DV G AQTGTGKTA F LP+L
Sbjct: 1   MSFADLGLIPELLQAVTDAGYTEPTPIQRQAIPIVIAGKDVMGGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             + +       P        IL PTRELA QV ++ + Y K+  L    + GG+    Q
Sbjct: 61  HRIARHANTSTSPARHQTRALILAPTRELAMQVFESVKTYSKHLPLRSVCVYGGVDIRPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L RG +++I TPGR+LDH  +  + ++ +E+LV+DEADRMLDMGFIP I+ I +L+P
Sbjct: 121 QAELRRGIEIVIATPGRLLDHLEQKSINLSQVEVLVLDEADRMLDMGFIPDIKRILALLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ+LLFSAT +DE++++++  L+ P+ IEV   +  +ETI H      +   +     
Sbjct: 181 KQRQSLLFSATFSDEIKRLADQMLKEPQLIEVARRNMVSETITHVVHPVSSGMKRNLLAH 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                        ++F + K     L H LE+ G S  AIHG+  Q+ R   L  FK G 
Sbjct: 241 LL---RHKPDTQALVFVDTKLMCGRLAHYLERSGISADAIHGDKGQQQRTDTLEAFKSGK 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGLDI ++  V NF++P+ AE+Y+HRIGRTGRAG HG A +LV+ E+  
Sbjct: 298 LRVLVATDVAARGLDIDELPFVINFELPHTAEDYVHRIGRTGRAGHHGYAISLVSSEEKH 357

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-------KNNPIPQKSTGFDR 408
            +  IEKLI+ ++          +P   +     H   R            P   +G   
Sbjct: 358 WLSEIEKLIKLQIPQERVPGFDPDPDFHEAGSRGHRGRRPAAAAADTEAQAPAARSGGRE 417

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMP-AFMLPKNRGKLND 463
           R    S++    P +E E +    +  + + A   GF  + P   + P  RG+  D
Sbjct: 418 RGVERSAEARREPAREREGLRAGPRRGRSSVAAD-GFDFSKPYEPLNPPRRGRRAD 472


>gi|295106692|emb|CBL04235.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 530

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 162/416 (38%), Positives = 236/416 (56%), Gaps = 6/416 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS   + AV   GY  PTP+Q + IPLVL+  D+   A TGTGKTA+F+LP+L+
Sbjct: 3   KFADLGLSKDALAAVEKLGYENPTPVQEQAIPLVLEGRDLIAAASTGTGKTAAFLLPILS 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L + + R R PR L++ PTRELA Q+A    +  +        + GG P+  Q K+L  
Sbjct: 63  TLPRVKGRNRAPRVLVVSPTRELAQQIARTCMQISRQTRHFTTTVFGGTPYGPQIKELRG 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+ D   RG + ++++E+LV+DEADRMLDMGF+P +  I    P  RQTL
Sbjct: 123 GTDVLIATPGRLKDLMKRGVVNLSSVEVLVLDEADRMLDMGFLPDVTTIVDATPECRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +QK   + L +P  +E+     TA+T+E   +            L + +  
Sbjct: 183 LFSATIDQSIQKNLGSLLNDPAMVEIARNGETAKTVEQFMMPIKNFNK---PELLEAVLR 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  I+F   K    +   +L   GF   +IH +  Q +R + L NF+ G   ++VA
Sbjct: 240 EKGSERIIVFARTKNRTEDCAEALCDAGFRAESIHSDKSQGARRRALENFRRGKTSILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+PDV HV NFD+P+  E+Y+HRIGRTGRAG  G A + V +E  + +  IE
Sbjct: 300 TDVLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGRAGEKGYAISFVTRETSRTLRDIE 359

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           +LI K + ++  +   L+P L K    +   AR+       S  + +R    S  K
Sbjct: 360 RLIGKDIPFMELETYELDPTLLKQ---KKGGARQGGSKSGGSKPYGKRSAGKSYGK 412


>gi|326802990|ref|YP_004320808.1| DEAD-box ATP-dependent RNA helicase CshA [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651469|gb|AEA01652.1| DEAD-box ATP-dependent RNA helicase CshA [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 508

 Score =  191 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 166/473 (35%), Positives = 257/473 (54%), Gaps = 29/473 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L P+++ AV + G+ + TPIQ +TIP  L+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFEELNLDPRLLQAVKNMGFEETTPIQAQTIPYALEGRDVLGQAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++         + L++ PTRELA Q      + GK   +    + GG     Q  +++
Sbjct: 61  EKIDHH---TEHIQALVIAPTRELAIQNGQELYRLGKEKGVRTVNVYGGANIRRQIHQIK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA V++ TPGR++D   R  L +N IE LV+DEAD ML+MGFI  I+ I    P  RQT
Sbjct: 118 KGAPVVVGTPGRLIDLMKRKVLNLNFIETLVLDEADEMLNMGFIEDIETIIRATPSNRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+Q++ E+F+Q+P  +++     TA+TI          + ++   L     
Sbjct: 178 LLFSATMPKEIQRIGEHFMQDPVTVKIEAKEMTADTI---DQYFTKCHDREKFDLLTRFI 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  I+F   K+ V  +   L ++G+    IHG++ Q  R  I+ +FK+G ++++V
Sbjct: 235 DVSHAKLAIVFARTKRRVDEVSRGLIERGYQAEGIHGDLSQEKRSSIMKDFKDGRLEILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI +V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISNVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSITFVSNHEMGYLRTI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE--------KIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           E L  KK       +S L PP E        K  +A      + +   Q     +   +N
Sbjct: 355 ENLTHKK-------MSPLRPPTEEEAFTGQIKQSLAAVEELLEEDRDDQYEEVVNYLSEN 407

Query: 413 YSSQKSHIPLKESEKISKLQQDIQENDADSLG-FRGNMPAFMLPKNRGKLNDK 464
           Y++++  + +  S+   K    +       LG  R +       K+RGK + K
Sbjct: 408 YTAEQLALAVVRSQMKDKNDVKVSITPERPLGRKRSD-------KSRGKSHSK 453


>gi|294676409|ref|YP_003577024.1| ATP-dependent RNA helicase SrmB [Rhodobacter capsulatus SB 1003]
 gi|294475229|gb|ADE84617.1| ATP-dependent RNA helicase SrmB [Rhodobacter capsulatus SB 1003]
          Length = 548

 Score =  191 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 216/526 (41%), Positives = 296/526 (56%), Gaps = 78/526 (14%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L P V+ A+ DAGY  PTPIQ   IP  L+  DV GIAQTGTGKTASF LPM+T
Sbjct: 3   KFTDLKLDPAVLRAIADAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMVT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L  GRAR RMPR+L+L PTRELAAQVA+NF+ Y K   LT ALLIGG+ F  Q+K ++R
Sbjct: 63  MLSSGRARARMPRSLVLCPTRELAAQVAENFDTYAKYTRLTKALLIGGVSFGEQDKLIDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLL+  ++I+V+DEADRMLDMGFIP I+ I  L PFTRQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFQLTPFTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE------TIEHCFVATYAQYSKKCALL 235
            FSATM  E+++++  FL  P RIEV   ++T+E                +  +K+  L 
Sbjct: 183 FFSATMAPEIERITNTFLHAPARIEVARQATTSETITQKLIQITPPRRDQSAKAKRELLR 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +    +   N IIFCN+K +V  +  SL+  GF+   IHG++DQ  R K L  F++G+
Sbjct: 243 AIIKSEGEACTNAIIFCNRKTDVDIVAKSLKTHGFNAAPIHGDLDQSLRTKTLDAFRDGS 302

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +QL++ASD+AARGLDIP V HVFN+D+P+ AE+Y+HRIGRTGRAGR G A+++    D K
Sbjct: 303 LQLLIASDVAARGLDIPAVSHVFNYDLPSHAEDYVHRIGRTGRAGRLGTAYSIGTPADAK 362

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN------------------ 397
           ++ AIE L+++++   +       P    +  A H   RK +                  
Sbjct: 363 YLAAIEALVKQEIPRAD------PPEGFSLSEAAHREPRKYDDDKGPKSRSSRSRSGRGR 416

Query: 398 -------------------------PIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQ 432
                                     +P+      RR +    +++  P  ES +   ++
Sbjct: 417 DEKRPPREDRAPVIVAVEEDDSHIVEVPEAKRAEPRRSE---PRRNDGPRSESHRAEPIR 473

Query: 433 QD--------------------IQENDADSLGFRGNMPAFMLPKNR 458
            D                     ++     +G   ++P F+L   R
Sbjct: 474 PDGPREDRRDERRSEPYRDSRRGRDGGPAVVGMGDHVPDFLLRSFR 519


>gi|254438460|ref|ZP_05051954.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
           307]
 gi|198253906|gb|EDY78220.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
           307]
          Length = 530

 Score =  191 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 209/463 (45%), Positives = 297/463 (64%), Gaps = 16/463 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L  KV+ AV + GY  PTPIQ   IP  L+  DV GIAQTGTGKTA F LPM+
Sbjct: 2   IKFSDLKLDAKVLKAVEETGYTTPTPIQAGAIPPALEGRDVLGIAQTGTGKTAGFTLPMI 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T+L++GRAR RMPR+L+L PTRELAAQVA+NF+ Y K   LT ALLIGG+ F+ Q+  ++
Sbjct: 62  TMLKRGRARARMPRSLVLAPTRELAAQVAENFDTYAKYTKLTKALLIGGVSFKEQDNLID 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDHF RGKL++++++I+V+DEADRMLDMGFIP I+ I  L PFTRQT
Sbjct: 122 RGVDVLIATPGRLLDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFGLTPFTRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY------AQYSKKCAL 234
           L FSATM  E+++++  FL NP +IEV   ++T+ETI    +             K+  L
Sbjct: 182 LFFSATMAPEIERITNTFLSNPAKIEVARAATTSETITQGVIMFKGSKKTSEAIEKQKLL 241

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
              +       +NGIIFCN+K +V  +  S+ K G     IHG+++Q  RM+ L+ F++G
Sbjct: 242 RDIIASEGANCRNGIIFCNRKIDVDAVAKSMTKAGLDASPIHGDLEQSHRMRTLAKFRDG 301

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           T++ +VASD+AARGLDIP+V HVFN+DVP+ AE+Y+HRIGRTGRAG+ G    +    D 
Sbjct: 302 TLRFLVASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGKTGATIMICTPRDQ 361

Query: 355 KHIDAIEKLIEKKVDWLN-GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           K++D IE+L+E  V  ++   + S  P  +  ++         +  P+++     R +  
Sbjct: 362 KNLDDIERLVEMAVPRMDLPGMPSAAPSAKPAEVVA-----TIDDRPKRTRTRGGRGRKN 416

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPK 456
            ++K+     E+ +    +QD  + +A       ++P    PK
Sbjct: 417 DAEKAVTAPIETAQSEAPKQDTPKVEAPET----HVPKAETPK 455


>gi|167646708|ref|YP_001684371.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter sp.
           K31]
 gi|167349138|gb|ABZ71873.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
          Length = 678

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 201/407 (49%), Positives = 264/407 (64%), Gaps = 12/407 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++LGLSP  + AV D GY   TPIQ   IP+ L   DV GIAQTGTGKTA+F LP++ 
Sbjct: 3   EFSELGLSPTTLQAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLPLID 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L  GRA+ RMPR L++ PTRELA QVA +FEKY K   L+ ALLIGG+ F  Q KKL+R
Sbjct: 63  KLMNGRAKARMPRALVIAPTRELADQVASSFEKYAKGTKLSWALLIGGVSFGDQEKKLDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLLM  ++ LV+DEADRMLDMGFIP I+ I  + P  +QTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKKQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+ ++++ FL++P RIE + P++T E I    V   +   K   L  + L  
Sbjct: 183 FFSATMPPEITRLTKQFLKDPVRIEASRPATTNENITQLMVKVPSSDPKAKRLALRALIE 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  ++ GI+FCN+K  V  +  SL+  GF   AIHG++DQ  R K L+ F++G+++++VA
Sbjct: 243 KAQIETGIVFCNRKTEVDVVAKSLKSHGFDAAAIHGDLDQSQRTKTLAAFRDGSLKILVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIP V HVFN+DVP+ A++Y+HRIGRTGRAGR G  + LV   D K  D + 
Sbjct: 303 SDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRSGVTYMLVTPADDKGFDKVV 362

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           KLI               P  EK+D+             ++  G DR
Sbjct: 363 KLIGST------------PTEEKLDLDYSGAVTIKREGDKRGGGRDR 397


>gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300075657|gb|ADJ65056.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 487

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 175/433 (40%), Positives = 248/433 (57%), Gaps = 12/433 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GLSP ++ A+ + GYV PTPIQ + IP+VLQ  DV G AQTGTGKTA F LP++  
Sbjct: 18  FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L +  +    P        IL PTRELA QVADN   Y +   L   ++ GG+    Q  
Sbjct: 78  LLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMAPQTA 137

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G +++I TPGR+LDH  +  + ++  +ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 138 ILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQ 197

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT + E++K++ +F  NP  IEV   ++TAE +       Y       A    
Sbjct: 198 RQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENV---TQTIYKVEEAAKADAVS 254

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q  +K  I+F N K     L  +L  +G    AIHG+  Q  RM  L  FK+G I+
Sbjct: 255 FIIRQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALEAFKQGQIE 314

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+D+P  AE+Y+HRIGRTGRAG  G A +L   +D + +
Sbjct: 315 VLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDDRLL 374

Query: 358 DAIEKLIEKKVDWLNGDLSSLNP--PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
             IEKLI+KK +    +L+   P    E+ D A+     +      +    DR +++ SS
Sbjct: 375 TDIEKLIKKKFER--AELTGFAPRARHERSDRAERGERSERGERSDRGDRSDRGERSRSS 432

Query: 416 QKSHIPLKESEKI 428
           ++        EK+
Sbjct: 433 REGGAAPMRREKV 445


>gi|152988184|ref|YP_001345923.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
 gi|150963342|gb|ABR85367.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
          Length = 635

 Score =  190 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 174/454 (38%), Positives = 253/454 (55%), Gaps = 17/454 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           M F+ LGLS  +  AV  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP  
Sbjct: 1   MSFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 59  -----MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                      + R   R  R L+L PTRELAAQV D+F+ Y ++  L    + GG+   
Sbjct: 61  ERLFPAGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L +G DVL+  PGR+LD   + K+ ++++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQIQALAKGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A   +   
Sbjct: 181 LPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALL 240

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                  +    +  ++F   K     L   L K G    AIHGN  Q +R K L++FK 
Sbjct: 241 AHL---VTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             ++++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            K + AIEK+  +++   +GD    +P     ++AQ     +  P  Q     +RR +  
Sbjct: 358 EKLLKAIEKMTRQRIP--DGDPQGFDPEAVLPEVAQPEP--REAPQKQPRRDKERRSRER 413

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             +++  P   +E  +   QD  E  A     RG
Sbjct: 414 KPKEAQAP---AENAAVAGQDGAEKPAGKRRRRG 444


>gi|290891221|ref|ZP_06554283.1| hypothetical protein AWRIB429_1673 [Oenococcus oeni AWRIB429]
 gi|290479185|gb|EFD87847.1| hypothetical protein AWRIB429_1673 [Oenococcus oeni AWRIB429]
          Length = 521

 Score =  190 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 158/397 (39%), Positives = 239/397 (60%), Gaps = 14/397 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GLSP+++ AV   GY + TPIQ KTIPL++Q  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFEEFGLSPELLSAVKKHGYDEATPIQEKTIPLIIQGVDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++    +    + L++ PTRELA Q  +   K G + ++   ++ GG     Q   L+
Sbjct: 61  EEVDP---KNPQIQALVISPTRELAMQTEEELNKLGSDKHVKTQVVFGGYDIRRQIHALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR++DH NR  +    ++ LVIDEAD ML+MGF+  I+ I    P  RQT
Sbjct: 118 EHPQILVGTPGRLIDHLNRHTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPDDRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D+++K+   F+++P+ + + +   T + ++   V T                
Sbjct: 178 LLFSATMPDDIKKIGVKFMKDPEEVHIASKGLTIDLVDQYLVNTREYEKFDAMTRL---F 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L  +L+ +G+    IHG++DQ +RM+ L +FK+G +Q +V
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+DVP   E+Y+HRIGRTGRAG HG + T V + +I ++ AI
Sbjct: 295 ATDVAARGLDISGVTHVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVVRGEIDYLRAI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPP-LEKIDIAQHNHARKN 396
           EKLI K+       +++L PP  E+  IA+  +A+  
Sbjct: 355 EKLINKR-------MAALKPPSAEEAHIARLKNAKAE 384


>gi|116491614|ref|YP_811158.1| superfamily II DNA/RNA helicase [Oenococcus oeni PSU-1]
 gi|116092339|gb|ABJ57493.1| Superfamily II DNA and RNA helicase [Oenococcus oeni PSU-1]
          Length = 521

 Score =  190 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 158/397 (39%), Positives = 239/397 (60%), Gaps = 14/397 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GLSP+++ AV   GY + TPIQ KTIPL++Q  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFEEFGLSPELLSAVKKHGYDEATPIQEKTIPLIIQGVDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++    +    + L++ PTRELA Q  +   K G + ++   ++ GG     Q   L+
Sbjct: 61  EEVDP---KNPQIQALVISPTRELAMQTEEELNKLGSDKHVKTQVVFGGYDIRRQIHALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR++DH NR  +    ++ LVIDEAD ML+MGF+  I+ I    P  RQT
Sbjct: 118 EHPQILVGTPGRLIDHLNRHTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPDDRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D+++K+   F+++P+ + + +   T + ++   V T                
Sbjct: 178 LLFSATMPDDIKKIGVKFMEDPEEVHIASKGLTIDLVDQYLVNTREYEKFDAMTRL---F 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L  +L+ +G+    IHG++DQ +RM+ L +FK+G +Q +V
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+DVP   E+Y+HRIGRTGRAG HG + T V + +I ++ AI
Sbjct: 295 ATDVAARGLDISGVTHVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVVRGEIDYLRAI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPP-LEKIDIAQHNHARKN 396
           EKLI K+       +++L PP  E+  IA+  +A+  
Sbjct: 355 EKLINKR-------MAALKPPSAEEAHIARLKNAKAE 384


>gi|330501389|ref|YP_004378258.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
 gi|328915675|gb|AEB56506.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
          Length = 632

 Score =  190 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 183/474 (38%), Positives = 270/474 (56%), Gaps = 21/474 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFASLGLSEALVRAIESAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTAGFALPIL 60

Query: 60  ------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                      + R   + PR L+L PTRELAAQV D+F+ Y ++     A + GG+   
Sbjct: 61  ERLFPAGHPDREQRHGPKQPRVLVLTPTRELAAQVHDSFKIYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L +G DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQVQALAKGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAQRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRAL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +Q   +  ++F   K     L   L+K G    AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITQGAWEQVLVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             ++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 SKVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKSTGFDRR 409
            K + +IE++ ++K+   D +  D S++    E+ ++ +    R       QK+ G D+ 
Sbjct: 358 EKLLKSIERMTKQKIPDGDLMGFDASAVEA--ERPEVREPRQPRNAGQQKKQKAEGGDKP 415

Query: 410 KKNYSSQKSHIPLKE--SEKISKLQQDIQEND-ADSLGFRGNMPAFM--LPKNR 458
           K    S       K+   E+ +K QQ           G +G   A +  LP +R
Sbjct: 416 KGERHSGGRKDKGKDGGKEQKAKPQQAQNRRGQGPRSGGQGQAVAAIPALPPDR 469


>gi|325269118|ref|ZP_08135738.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           multiformis DSM 16608]
 gi|324988505|gb|EGC20468.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           multiformis DSM 16608]
          Length = 572

 Score =  190 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 143/448 (31%), Positives = 240/448 (53%), Gaps = 10/448 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L+  V+ A+ D  + + TP+Q K IP +L+  DV G+AQTGTGKTA+++LP+L
Sbjct: 1   MYFEDLDLNDNVLDALYDMRFDECTPVQEKCIPEILKGKDVLGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP----FEAQN 116
           + L  G         +I+ PTRELA Q+    + +    +    + + G      ++ + 
Sbjct: 61  SKLADGGYPESAINCVIMSPTRELAQQIDQAMQGFAYYLDGVSCVAVYGGNDGNRYDQEL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  GADV+I TPGR + H + G + ++ +   ++DEADRMLDMGF   I  I   +P 
Sbjct: 121 KSLSLGADVVIATPGRFISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + QT++FSATM  +++++++  L+NP  I++       +  +      Y  Y  +   + 
Sbjct: 181 SCQTIMFSATMPKKIEELAKTLLKNPVEIKLAVSKPAEKIHQM----AYVCYETQKIGII 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + +     +K  IIF   K+ V  +  SL ++  +   +H ++DQ  R  ++  FK G I
Sbjct: 237 KDIFKAGDLKRVIIFSGSKQKVKQIAASLSRKHINCGEMHSDLDQEQRNDVMFKFKSGQI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ ARG+DI D+  V N+DVP+ AE+Y+HRIGRT RA R GKA T V+ +DI +
Sbjct: 297 DVLVATDIVARGIDIDDITMVINYDVPHDAEDYVHRIGRTARADRDGKAITFVSVDDIYY 356

Query: 357 IDAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
              IE  +EK+++   L  +L             + + A+      +       +K+  +
Sbjct: 357 FQQIEAFLEKEIEKIPLPEELGEGPEYKSNGKPKRGSSAKSRRRKDRDQQSHKDKKQGGN 416

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADS 442
            Q+S  P  + + +S  +   ++    S
Sbjct: 417 KQRSRRPTAQDQNVSDDRNTDKQERETS 444


>gi|254421014|ref|ZP_05034738.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
 gi|196187191|gb|EDX82167.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
          Length = 545

 Score =  190 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 201/441 (45%), Positives = 271/441 (61%), Gaps = 2/441 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ LGLSP  + AV D GY   TPIQ + IP+ L   DV GIAQTGTGKTA+F LP++ 
Sbjct: 3   EFSQLGLSPTTLQAVADTGYTTATPIQEQAIPVALAGRDVLGIAQTGTGKTAAFTLPLVE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L  GRAR RMPR ++L PTRELA QVA++F KY K   LT  LLIGG+    Q   L +
Sbjct: 63  RLASGRARARMPRAIVLAPTRELADQVAESFAKYAKGTKLTWVLLIGGVSMGDQVAALNK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LD F RGK+L+  +EI+V+DEADRMLDMGFIP I+ I  L P  RQTL
Sbjct: 123 GVDVLIATPGRLLDLFERGKMLLTGVEIMVVDEADRMLDMGFIPDIERIFKLTPPRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+ +++  FL++P RIE + P+ TA+TI    V       K      + L S
Sbjct: 183 FFSATMPPEITRLTAAFLKDPTRIEASRPAMTADTITQYIVRIPTSDPKAKRAALRALMS 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  ++NGI+FCN+K  V  +  SL+  GF   AIHG++DQ  R K L++F+ G ++++VA
Sbjct: 243 RTDVRNGIVFCNRKSEVDIVAKSLKTHGFDAAAIHGDLDQSHRTKTLADFRSGALKILVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFN+DV + A++Y+HRIGRTGRAG+ G+AF +V   D K +D + 
Sbjct: 303 SDVAARGLDIPDVSHVFNYDVSHHADDYVHRIGRTGRAGKLGQAFMIVTPADDKSLDKVL 362

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           KLI+     L   L  ++    K        + ++N       G  R  +   +    + 
Sbjct: 363 KLIKMDPQEL--VLDDIDFDAIKDGGRDDKRSSRSNETRSGGRGRSRAAEPAQAPAPAVA 420

Query: 422 LKESEKISKLQQDIQENDADS 442
           L E++      +      A  
Sbjct: 421 LAETDAAEAPTRSRSRRKAKP 441


>gi|148657801|ref|YP_001278006.1| DEAD/DEAH box helicase domain-containing protein [Roseiflexus sp.
           RS-1]
 gi|148569911|gb|ABQ92056.1| DEAD/DEAH box helicase domain protein [Roseiflexus sp. RS-1]
          Length = 467

 Score =  189 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 162/467 (34%), Positives = 246/467 (52%), Gaps = 14/467 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F      P++   + D GY  PTPIQ + IP  L   DV GIAQTGTGKTA+FVLP+L
Sbjct: 1   MSFDSFRFHPQITAGIRDLGYHTPTPIQEQVIPHALDGRDVIGIAQTGTGKTAAFVLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +G       R +I+ PTRELA Q+    E  GK   L    L GG+ ++ Q ++L 
Sbjct: 61  QRLMRGPR--GRVRAMIVTPTRELAEQIQGVIEALGKYTGLRSVTLYGGVGYQGQIQRLR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ +  PGR+LDH  RG L + ++++L++DEAD+M DMGF+P ++ I  L P  RQT
Sbjct: 119 RGVEIAVVCPGRLLDHLERGTLTLEHLDMLILDEADQMFDMGFLPDVRRILRLAPAQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM D ++       +   R         +  +     A Y         L   L 
Sbjct: 179 MLFSATMPDAIRA----LAREALREPQTIQIGRSAPVSTVTHAIYPVAEHLKTALLIELL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + +IF   K    +L  +L + G+   A+ GN+ Q  R   L  F+ G  Q++V
Sbjct: 235 RHTDTGSVLIFTRTKHRAQHLSDTLARMGYRATALQGNMSQNRRQAALDGFRSGRYQILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+D+P  AE Y HRIGRTGRA R G AFTLV + D   + AI
Sbjct: 295 ATDIAARGIDVAHISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRSDTGMVRAI 354

Query: 361 EKLIEK--KVDWLNG-DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           E+LI +  K + + G D  +  P  +    A+ +HA +++ +P+      + +++  + +
Sbjct: 355 ERLIGEPLKRETVPGFDYHAAAPAHD----ARSDHAPRHHAMPRHYEPHSQDERDNRAPR 410

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            H   +     +  ++D+QE  +D+   R + P       R    D+
Sbjct: 411 RHDAQERRSDTAPRRRDVQEWRSDAAPNR-HKPRSRDTSARSTRADR 456


>gi|113866560|ref|YP_725049.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
 gi|113525336|emb|CAJ91681.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
          Length = 520

 Score =  189 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 178/466 (38%), Positives = 263/466 (56%), Gaps = 18/466 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY  PTPIQ + IP +L+  D+   AQTGTGKTA F LPML
Sbjct: 1   MSFSELGLSDKIVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRARVRMPRTL---------ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
            +L    AR                +L PTRELAAQV ++   YGK   L   ++ GG+ 
Sbjct: 61  QLLSDSAARGANGAQRPARLPVRALVLTPTRELAAQVEESVRNYGKYLRLRSMVMFGGVG 120

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q ++L+RG ++++ TPGR+LDH ++  + ++ +E+LV+DEADRMLDMGFI  I+ I 
Sbjct: 121 INPQIEQLKRGVEIVVATPGRLLDHVSQRTIDLSQVELLVLDEADRMLDMGFIHDIRKIL 180

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +++P  RQ LLFSAT +D+++ +++  L NP  IEV   ++TAET++        +  ++
Sbjct: 181 NVLPAKRQNLLFSATFSDDIRALADRLLNNPASIEVARRNTTAETVDQRVYPVDRERKRE 240

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                  L  Q      ++F   K     L   L K G S  AIHGN  Q +R + LS F
Sbjct: 241 L---LAHLVRQHDWHQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEF 297

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K GT++L+VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  
Sbjct: 298 KSGTLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCV 357

Query: 352 EDIKHIDAIEKLIEKKVDW-----LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
           ++I  +  IE+LI++K++         D S    P++K    +    +       +    
Sbjct: 358 DEIALLRDIERLIKRKLEQTVLPGFEVDPSIAPEPIQKGRQQRGGGGQGQGQGQGRGRAQ 417

Query: 407 DRRKKNY-SSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
            R   N     +   P +E++   +  Q  Q  +  + G RG  PA
Sbjct: 418 ARPAGNEGEGAQRQRPAREAQAAPRQAQGGQRGNGAANGNRGGQPA 463


>gi|169831556|ref|YP_001717538.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638400|gb|ACA59906.1| DEAD/DEAH box helicase domain protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 533

 Score =  189 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 151/371 (40%), Positives = 233/371 (62%), Gaps = 6/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+SP+++ AV D G+ +P+PIQ++TIP +L   D+ G AQTGTGKTA+F +P+L 
Sbjct: 9   SFADLGVSPEILRAVDDMGFEEPSPIQLQTIPQLLDGRDLVGQAQTGTGKTAAFAIPLLM 68

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    R   P+ L++ PTRELA QVA+ F + G+  N  V  + GG     Q K L+R
Sbjct: 69  RLQA---RRGWPQVLVMTPTRELAIQVAEEFARVGRYTNTRVLPVYGGQSIGRQIKTLQR 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR+LDH NR  L +  ++ +V+DEAD MLDMGFI  I++I +  P +RQTL
Sbjct: 126 GVDVVVGTPGRVLDHLNRKTLRLEQLQAVVLDEADEMLDMGFIDDIESILNATPPSRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   + +++E +++ P  + +N     A  I   +         +          
Sbjct: 186 LFSATIPGPIARLAEKYMRTPVHVSINPEYVAAPDIWQVYYELRNIDHLEALCRIL---D 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + ++  IIFC  K+ V  L  +L  +G+S   IHG+++Q  R +++  F+EG I L+VA
Sbjct: 243 AEAVERAIIFCRTKRRVDELAEALRSRGYSADHIHGDLEQNQRNRVMGAFREGEIDLLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ ++ HV N+D P   E+Y+HRIGRTGRAGR G A TLV  +++  +  I+
Sbjct: 303 TDVAARGIDVQNISHVINYDCPQDPESYVHRIGRTGRAGRTGTAITLVYPKELPLLRTIQ 362

Query: 362 KLIEKKVDWLN 372
           +L++ +++   
Sbjct: 363 RLVKVRIERHP 373


>gi|302383278|ref|YP_003819101.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193906|gb|ADL01478.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 521

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 195/375 (52%), Positives = 260/375 (69%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ LGLSP  + AV+D GY   TPIQ + IP+ L   DV GIAQTGTGKTA+F LP++ 
Sbjct: 3   EFSALGLSPTTLQAVIDTGYTTATPIQAQAIPVALAGRDVLGIAQTGTGKTAAFTLPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L KGRAR RMPR L+L PTRELA QVA +FEKY K   L+  LLIGG+    Q   L +
Sbjct: 63  RLSKGRARARMPRALVLAPTRELADQVAMSFEKYAKGTKLSWVLLIGGVSMGDQVAALNK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LD F RGK+++N +E++V+DEADRMLDMGFIP I+ I  L P  RQTL
Sbjct: 123 GVDVLIATPGRLLDLFERGKMMLNGVELMVVDEADRMLDMGFIPDIERIFKLTPPKRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+ ++++ FL++P RIE + P+ TAETI    V   +   K      + L +
Sbjct: 183 FFSATMPPEITRLTQAFLKDPTRIEASRPAMTAETITQYLVRIPSSDPKAKRAALRELMA 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  ++NGI+FCN+K  V  +  SL++ GF    IHG++DQ  R K L++F+ G ++++VA
Sbjct: 243 RADVRNGIVFCNRKSEVDVVAKSLKQHGFDAAPIHGDLDQSLRTKTLADFRSGALKILVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDV HVFN+DV + A++Y+HRIGRTGRAG+ G+AF +V   D K +D + 
Sbjct: 303 SDVAARGLDIPDVSHVFNYDVSHHADDYVHRIGRTGRAGKLGQAFMIVTPADDKSLDKVM 362

Query: 362 KLIEKKVDWLNGDLS 376
           KLI+   + L  DL 
Sbjct: 363 KLIKMSPEELVLDLD 377


>gi|237745550|ref|ZP_04576030.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
 gi|229376901|gb|EEO26992.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
          Length = 470

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 172/457 (37%), Positives = 256/457 (56%), Gaps = 16/457 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL+ +++ A+ D GY  PTPIQ + IP++L+  DV G AQTGTGKTA + LP+L  
Sbjct: 17  FGDFGLASEILKALDDLGYSSPTPIQSQAIPVILEGKDVMGAAQTGTGKTAGYSLPVLQS 76

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L         P        IL PTRELA QV ++  KY K  +L  A++ GG+    Q  
Sbjct: 77  LLYYANASMSPARHPVRALILVPTRELADQVYEDVRKYAKYTSLRTAVVFGGVDMSGQTG 136

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GA++LI TPGR+LDH  +  + +    ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 137 ILRAGAEILIATPGRLLDHIQQKNVNLGQTGILVLDEADRMLDMGFLPDLQRIVNLLPKK 196

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT + E++K++ +F     R      +    T ++     Y           +
Sbjct: 197 RQNLLFSATFSSEIRKLANSF---LDRPVSVEVARQNATADNVTQTVYRIDEADKNDAVE 253

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L      +  +IF N K     L   LEK+G    AIHG+  Q  RM  L  FKEG I 
Sbjct: 254 YLLRLHKREQVLIFSNTKAGASRLARQLEKKGLKAAAIHGDKTQAERMAALDAFKEGNIT 313

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL I ++  V NFD+P  AE+Y+HRIGRTGRAG  G+A +L + +D K +
Sbjct: 314 VLVATDVAARGLHIEELPCVINFDLPFVAEDYVHRIGRTGRAGASGEAISLCSAKDEKLL 373

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNYS 414
           + IEKLI++K+   +      +P + K  +++   A   +++   P KS G +++ ++  
Sbjct: 374 NEIEKLIKRKLPVHSIP----DPEIRKEKVSKGEAAGADKRSERSPYKSIGLEKKGRDPW 429

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSL-GFRGNMP 450
             + ++P   SE   + ++ +Q++ A  L    G +P
Sbjct: 430 FDRPYVPEASSENGKETEKPVQKSLARPLAALLGGIP 466


>gi|83310484|ref|YP_420748.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
 gi|82945325|dbj|BAE50189.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
           AMB-1]
          Length = 583

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 197/409 (48%), Positives = 272/409 (66%), Gaps = 4/409 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL P+++ A+ ++GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LPM+ 
Sbjct: 39  TFEDLGLGPEILKALAESGYTHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMIE 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           IL  GRA+ RMPR+LIL PTRELAAQVA+NF+KYGK + L  AL+IGG     Q   L+R
Sbjct: 99  ILAAGRAKARMPRSLILAPTRELAAQVAENFDKYGKYHPLKKALIIGGESMSDQVALLDR 158

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LD F RG++L+N++++LVIDEADRMLDMGFIP ++ I  L+P  RQTL
Sbjct: 159 GVDVLIATPGRLLDMFERGRILLNDVKVLVIDEADRMLDMGFIPDVEKIVGLLPKIRQTL 218

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E++++++ FL NPK ++V+T +S A T+            +      + L  
Sbjct: 219 FFSATMGPEIRRLADAFLMNPKEVKVSTGASAATTVVQALAVVEEIDKR---ETLRHLIR 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + +KN  IFCN+K++V  L  SL+K GF V  +HG++ Q +R + L  FK+G  +LMV 
Sbjct: 276 IEEVKNAFIFCNRKRDVDVLFRSLKKHGFDVVQLHGDMAQSARGETLEKFKKGEARLMVC 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARG+DI  V HVFNFDVP  AE+Y+HRIGRTGRAG  G AFT+ + +D + + AIE
Sbjct: 336 SDVAARGIDISAVSHVFNFDVPIHAEDYVHRIGRTGRAGMEGHAFTIASPDDGRFVGAIE 395

Query: 362 KLIEKKVDWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            +I   +  ++ + + +L+  +          A K+   P +    + +
Sbjct: 396 AMIGTTIPRISVEGVPALDLDMTARKGRGGRGAPKDAKRPARGKDDEAK 444


>gi|91775611|ref|YP_545367.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|91709598|gb|ABE49526.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
          Length = 456

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 161/457 (35%), Positives = 251/457 (54%), Gaps = 15/457 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F +L L P ++ A+ +AGY  PTPIQ + IP VL+ HD+   AQTGTGKTA+F LP +
Sbjct: 1   MSFENLNLHPAILRALTEAGYSTPTPIQAQAIPEVLEGHDLMASAQTGTGKTAAFTLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +     A+ R PR L+L PTRELAAQV +   KYGK        ++GG+P+  QNK L
Sbjct: 61  NLLATPHPAKSRGPRILVLTPTRELAAQVNEAARKYGKFLRARTVSIVGGMPYPLQNKLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+L+ TPGR+LDH  RG++ M+ +++L++DEADRMLDMGF+P I+ I+S +P  RQ
Sbjct: 121 SQPIDILVATPGRLLDHMERGRIDMSRLQMLILDEADRMLDMGFMPDIERISSALPSERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT   ++  +++  L+ PK I++         IE   +       K    L + L
Sbjct: 181 TLMFSATFEGQIANIAKTLLKTPKVIQIAAQKEKHANIEQKLLFVDDMAHK--NKLLEHL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   I+F + K++   L   L   G    A+HG++ Q +R + L+  + G ++++
Sbjct: 239 LIAPGVNQAIVFTSTKRHADLLAEDLYAAGHKSAALHGDMTQGARNRTLTKLRHGDVRVL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HV N+D+P  AE+Y+HRIGRTGRAG  G A +  +  D   +  
Sbjct: 299 VATDVAARGIDVQGITHVINYDLPKFAEDYVHRIGRTGRAGNTGVALSFASHMDRHQLRK 358

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ---------KSTGFDRRK 410
           IE+   ++++    +      P  ++D   HN   ++    Q         +  G+  R 
Sbjct: 359 IEQYTGQRLEISVIEGLEPKRPAPRMD---HNDKPRSGRPGQRPGGGGYKPRGQGYASRD 415

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
            N S  +S        +    +   +  D+D    R 
Sbjct: 416 GNRSEGRSFGDRAAGSRTDANRGPAKRQDSDRPARRS 452


>gi|332879243|ref|ZP_08446940.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332682663|gb|EGJ55563.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 448

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 157/455 (34%), Positives = 245/455 (53%), Gaps = 21/455 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF DL LS +V+ A+ D  + + TPIQ   IP++L+  D+ G+AQTGTGKTA+F+LP+L
Sbjct: 1   MDFYDLDLSDQVLDALDDMNFTECTPIQEHAIPVILEGRDMIGVAQTGTGKTAAFLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + L  G    +    +I+ PTRELA Q+    E +    N++   + GG       ++  
Sbjct: 61  SKLSDGGYPEKAINCIIMSPTRELAQQIDQAMEGFSYYMNVSSVAVYGGNDGIRYEQEKR 120

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
               GADV+I TPGR++ H + G + ++ +   V+DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLAMGADVIIATPGRLISHLSLGNVDLSKVSFFVLDEADRMLDMGFSDDIMQIVKYLPQE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q       +   R  V    + ++  +    + Y  Y  +   L +
Sbjct: 181 RQTIMFSATMPRKIQD----LARTILRDPVEVKLAVSKPADKIVQSAYVCYEAQKVSLVK 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L ++      IIF + K  V ++  +L + GF V A+H +++Q+ R +++  FK   I 
Sbjct: 237 KLFAERPPHRVIIFASSKLKVKDMAIALGRAGFKVGAMHSDLEQQERDEVMYKFKAQQID 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V NFDVP+ AE+Y+HRIGRT RA   G+A TLV+++D +  
Sbjct: 297 VLVATDIVARGIDIDDIQLVINFDVPHDAEDYVHRIGRTARANNDGEAITLVSEKDQQRF 356

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS- 414
            +IE  +E +++   L   L        K    +    R+N        G+ RR KN S 
Sbjct: 357 ASIEHFLETEIEKRPLPEGLGEGPAYRPKEGGEKRYGGRRNQ---GHRNGYKRRNKNQSK 413

Query: 415 ---SQKSHIPLKESEKI-----SKLQQDIQENDAD 441
              SQK   P   S +       K +Q  ++  +D
Sbjct: 414 EGQSQKKARPNANSRRSTANRDKKAKQPQEKKASD 448


>gi|118578871|ref|YP_900121.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118501581|gb|ABK98063.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
           2379]
          Length = 454

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 164/427 (38%), Positives = 245/427 (57%), Gaps = 4/427 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F +L L+P ++ AV   GY  PTPIQ + IP+V+   D+   AQTGTGKTA+FVLP +
Sbjct: 1   MTFEELNLTPAILKAVTACGYTTPTPIQQQAIPVVMTGSDLIATAQTGTGKTAAFVLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +        + PR L+L PTRELA Q  D    YG+   L    ++GG+P+  Q + L
Sbjct: 61  QRLSTPSSVPGKGPRVLVLTPTRELAGQCIDAARSYGRGARLRCGSILGGMPYREQLRLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR+LDH  RG + +N +E+LV+DEADRMLDMGF   ++ I S  P  RQ
Sbjct: 121 SAPVDLIVATPGRLLDHLERGSIALNRLEMLVLDEADRMLDMGFSEDMEKIVSAAPQERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+F+ATM   + K++E  L+NP+RIE+   +S+ E IE           KK   L + L
Sbjct: 181 TLMFTATMGTTVLKLAEKMLRNPQRIELAVRTSSHELIEQRLHVADNLGHKKE--LLRHL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S   +   IIF   K++   L   L ++G     +HG+++Q +R K +   ++G I+L+
Sbjct: 239 VSDKGLTRAIIFSATKRDADELARELSREGHPAAPLHGDMNQFARNKTIERMRKGAIRLL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV NFD+P  AE+Y+HRIGRTGRAG  G A + V+  ++ +++ 
Sbjct: 299 VATDVAARGLDVNGISHVINFDLPRFAEDYVHRIGRTGRAGASGIAISFVSPSELSYLER 358

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ-KSTGFDRRKKNYSSQKS 418
           IE+ I KK+   N +  +    L ++        RK+    +   TGF  +      +  
Sbjct: 359 IERFIGKKLPEQNIEGLAPLSVLRRVSGGGAPGKRKSPGGGRYGKTGFKGKASGAQGKPW 418

Query: 419 HIPLKES 425
           +   K S
Sbjct: 419 NNAAKSS 425


>gi|256827018|ref|YP_003150977.1| DNA/RNA helicase, superfamily II [Cryptobacterium curtum DSM 15641]
 gi|256583161|gb|ACU94295.1| DNA/RNA helicase, superfamily II [Cryptobacterium curtum DSM 15641]
          Length = 551

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 158/448 (35%), Positives = 230/448 (51%), Gaps = 5/448 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGLS K + AV   GY  PTP+Q + IP VL   DV   A+TGTGKTA+F LP + 
Sbjct: 4   TFHDLGLSEKALAAVDLLGYTDPTPVQEQAIPAVLAGRDVIAAAKTGTGKTAAFSLPTMD 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   R   + P  LI+ PTRELA Q+        K     V  ++GG+ +  Q   L R
Sbjct: 64  RLGHARH-GQGPLLLIVTPTRELALQIESVCRTIAKRSGHRVTCVVGGVSYNPQIDSLRR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR++D  N+    +N +E LV+DEADRMLDMGF+P ++ I +  P  RQTL
Sbjct: 123 GTDVLIATPGRLIDLMNQDAAHLNQVETLVLDEADRMLDMGFLPDMRRIVAACPTQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++    + L NP  +     +   ET +           +    L   L +
Sbjct: 183 LFSATIDSAIEDNMAHLLNNPVFV---EIAHRGETADTIEQYRIPVDHRHKNDLLIALLN 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      I+F   +  V      L K GF+V  IH +  Q  R + +   + G   ++VA
Sbjct: 240 ERGGTRIIVFARTRHRVDTCVRKLRKAGFAVEPIHSDRSQNQRKRAIEALEAGKCDILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+DIP+V +V N D+P++ E+Y+HRIGRTGRAG  G A + V  E+   +  I+
Sbjct: 300 TDVLARGIDIPNVNYVVNLDMPDQVEDYVHRIGRTGRAGEAGCAISFVTPENKAILRDIQ 359

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR-RKKNYSSQKSHI 420
           KLI K +  ++ +    +     +         +N+P    +   D+ RKK  SS+ S  
Sbjct: 360 KLIGKDIPEMSVESFDSSASDNALAAKATRANAQNDPELATAAREDKSRKKAKSSRSSRR 419

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGN 448
                ++ +  QQ   +N   +   R N
Sbjct: 420 EHNTEDQRAGGQQRGHKNPRGNKSNRNN 447


>gi|146284249|ref|YP_001174402.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri A1501]
 gi|145572454|gb|ABP81560.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas stutzeri
           A1501]
 gi|327482632|gb|AEA85942.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri DSM 4166]
          Length = 609

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 175/466 (37%), Positives = 264/466 (56%), Gaps = 18/466 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGLS  +  AV  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+ 
Sbjct: 1   MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 60  ------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                      + R   + PR L+L PTRELAAQV D+F+ Y ++  L  A++ GG+   
Sbjct: 61  ELLFPGGHPDREHRYGPKQPRVLVLTPTRELAAQVHDSFKVYARDLPLKSAVIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + +G DVL+  PGR+LD  N+  + ++++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQIQAVAKGIDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   LQNP+RIEV  P++T E IE       + + +   
Sbjct: 181 LPAKRQNLLFSATFSKDITDLAAKLLQNPERIEVTPPNTTVERIEQRVFRVASSHKRAL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +Q   +  ++F   K     L   LEK G    AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             ++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 NQVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            K +  IE++ ++++   +GDL   +     I+  +        P PQ+     R +++ 
Sbjct: 358 EKLLKGIERMTKQRIP--DGDLQGFDA--SSIEAEKPEVREPRQPRPQRGERKARGERDK 413

Query: 414 SSQK----SHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLP 455
            ++K         +   K  K  +D   ++A  +     +P    P
Sbjct: 414 PAEKGAEQKERNRRSKSKTRKPARDGVASEAQGVARPPQLPPDRAP 459


>gi|114797080|ref|YP_759424.1| putative ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC
           15444]
 gi|114737254|gb|ABI75379.1| putative ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC
           15444]
          Length = 536

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 200/370 (54%), Positives = 258/370 (69%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD GL+  ++ AV ++GY  PTPIQ + IP +L   DV G+AQTGTGKTA+FVLPM+ 
Sbjct: 5   TFADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L  GRAR RMPR LIL PTRELAAQVA+NFEKYGK   LT+ALLIGG+ F+ Q   L+R
Sbjct: 65  RLSTGRARARMPRCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQR 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR++D F+RGKLLM  +E L+IDEADRMLDMGFIP I+ I + +P  RQTL
Sbjct: 125 GVDVLIATPGRLMDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKICAKLPANRQTL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   ++Q++++ F ++PK+IEV  P+ TAETI    V       K      + +  
Sbjct: 185 LFSATFPTDIQRLAKTFQKDPKKIEVTRPAQTAETISQFVVKLPTNDGKARRTALRRVIE 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +KNGI+FCN+K  V  +  SL K G     IHG++ Q  R + L  F++G ++L+VA
Sbjct: 245 ATNVKNGIVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGKLKLLVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIPDVGHVFNF  P + E+Y+HRIGRTGRAGR G+++T+V   D K    + 
Sbjct: 305 SDVAARGLDIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVTPADDKSWGFVV 364

Query: 362 KLIEKKVDWL 371
           K+I+K V   
Sbjct: 365 KMIKKDVPEF 374



 Score = 37.5 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 18/102 (17%)

Query: 372 NGDLSSLNPPLEKIDI----AQHNHARKNNPIPQKS-TGFDRRKKNYSSQKSHIPLKES- 425
           +GD++  + P+E +      A    A +  P  +++  G  RR++   + +     +E  
Sbjct: 435 DGDVAVADAPVETVATETVEAAEPAAVQEKPKRERAPRGEKRRERTEETPQPRAEKRERS 494

Query: 426 ---EKISKLQQDIQENDAD---------SLGFRGNMPAFMLP 455
               +  + Q+D +  D D          +GF  ++P F+  
Sbjct: 495 GGDRERERPQRDYKRKDDDLILEPAPDRVVGFGNDVPNFLKR 536


>gi|16126090|ref|NP_420654.1| DEAD-box ATP dependent DNA helicase [Caulobacter crescentus CB15]
 gi|221234860|ref|YP_002517296.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
 gi|13423288|gb|AAK23822.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter
           crescentus CB15]
 gi|220964032|gb|ACL95388.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
          Length = 517

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 197/375 (52%), Positives = 255/375 (68%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DLGLSP  + AV D GY   TPIQ + IP+ L   DV GIAQTGTGKTA+F LP++ 
Sbjct: 3   EFTDLGLSPTTLQAVADTGYTTATPIQAQAIPVALAGQDVLGIAQTGTGKTAAFTLPLID 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ GRA+ RMPR L++ PTRELA QVA +FEKY K   L+ ALLIGG+ F  Q KKL+R
Sbjct: 63  RLQSGRAKARMPRALVIAPTRELADQVAASFEKYAKGTKLSWALLIGGVSFGDQEKKLDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLLM  ++ LV+DEADRMLDMGFIP I+ I  + P  +QTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKKQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+ ++++ FL++P RIEV  P++T   I    V   +   K   L  + L  
Sbjct: 183 FFSATMPPEITRLTKQFLRDPVRIEVARPATTNANITQLLVKVPSSDPKAKRLALRALIE 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  ++ GI+FCN+K  V  +  SL+  G+    IHG++DQ  RMK L++F+ G ++++VA
Sbjct: 243 KAGIETGIVFCNRKTEVDIVAKSLKVHGYDAAPIHGDLDQTQRMKTLADFRSGALKILVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIP V HVFN+DVP+ A++Y+HRIGRTGRAGR G  + LV   D K  D + 
Sbjct: 303 SDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRTGITYMLVTPADDKGFDKVI 362

Query: 362 KLIEKKVDWLNGDLS 376
           KLI    D    DL 
Sbjct: 363 KLIGSTPDEEKLDLD 377


>gi|266619246|ref|ZP_06112181.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479]
 gi|288869241|gb|EFD01540.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479]
          Length = 432

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 167/429 (38%), Positives = 254/429 (59%), Gaps = 14/429 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  ++ A+ + GY  P+PIQ K IP VL   DV G AQTGTGKTA+F LP++
Sbjct: 1   MTFKDLQLSAPLLKALEEKGYTTPSPIQEKAIPHVLAGKDVLGCAQTGTGKTAAFALPII 60

Query: 61  TILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L +   +     + R+LIL PTRELA Q+A+NF++YG +  +  A++ GG+    Q K
Sbjct: 61  QNLMRPSDKKHSKRVIRSLILTPTRELALQIAENFKEYGSHTPVRCAVIFGGVSAVPQIK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L+RG D+L+ TPGR+ D  ++G++ ++++E+ V+DEADRMLDMGFI  ++ I SL+P  
Sbjct: 121 ELQRGIDILVATPGRLNDLIHQGEISLSHVEMFVLDEADRMLDMGFIHDVKKIISLLPVK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTLLFSATM  E+Q ++E  L NP  +EV   SS  + IE        +  +   +   
Sbjct: 181 KQTLLFSATMPPEIQALTEKLLHNPAVVEVTPVSSIVDLIEDSLYYVDKENKRALLVHLL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++ + + ++F   K     +   L K   +  AIHG+  Q +R K LS FK GT++
Sbjct: 241 ---KREAITSTLVFTRTKHGADRMAKFLTKNRINAAAIHGDKSQGARQKALSQFKAGTVR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ A+D+AARG+DI ++  V NFD+PN  E Y+HRIGRTGRAG  G+A +    E+  ++
Sbjct: 298 VLAATDIAARGIDIEELSCVINFDLPNVPETYVHRIGRTGRAGLGGRAISFSDIEEKAYV 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           + IEKLI KK+  +         P+    + Q    ++  P P K+TG +  K+   S+ 
Sbjct: 358 EDIEKLIGKKIPVVK----DHPFPMTVFTVPQ----KETKPRPVKNTGRNDAKRPQKSKV 409

Query: 418 SHIPLKESE 426
           +      + 
Sbjct: 410 AQTARPRTR 418


>gi|82703770|ref|YP_413336.1| DEAD/DEAH box helicase-like [Nitrosospira multiformis ATCC 25196]
 gi|82411835|gb|ABB75944.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
           25196]
          Length = 510

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 175/472 (37%), Positives = 265/472 (56%), Gaps = 17/472 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P+++ A+ D GY  PTPIQ + IP +L+  D+ G AQTGTGKTASF LPML
Sbjct: 1   MSFTELNLTPEILRAIADQGYTDPTPIQTQAIPHILEGRDIMGAAQTGTGKTASFTLPML 60

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +L+ G      P        IL PTRELA QV ++ + YGK   L  A + GG+  E Q
Sbjct: 61  NLLQSGANTSASPARHPIRTLILVPTRELAIQVHESVKTYGKYLPLRYAAVYGGVDMEPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L  G ++L+ TPGR+LDH  +  + ++ +EIL++DEADRMLDMGF+P I+ I +L+P
Sbjct: 121 TRELRAGVEILVATPGRLLDHVQQKAINLSKVEILILDEADRMLDMGFLPDIKRILALLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ+L+FSAT +DE++K++   L+ P  +EV   ++  E I H       +  ++    
Sbjct: 181 SQRQSLMFSATFSDEIKKLAGKLLREPVLVEVARRNTITELITHVVHPVVRERKREL--- 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L     ++  ++F   K     L H LE+   S  AIHG+  Q  R + L+ FK+G 
Sbjct: 238 LAHLIKSQDLQQVLVFARTKHGASRLAHQLERDHISATAIHGDKTQTQRTEALAKFKQGV 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGLDI ++ HV NF++P   E+Y+HRIGRTGRAG  G A +LV +++ +
Sbjct: 298 VRVLVATDVAARGLDIEELPHVVNFELPTNPEDYVHRIGRTGRAGTKGDAVSLVCEDEAE 357

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLE-KIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
            +  IEKL++ K++      S + P  E +  +AQ   A  +  I QKS G   R     
Sbjct: 358 LLKGIEKLLKFKLE------SKVVPGFEPETPVAQGEAAISHGRIDQKSAGSQPRGSQPR 411

Query: 415 S--QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
              Q + +      K    +   +   +   G     P F  P   G  + +
Sbjct: 412 KLEQANSVMSLNGTKGKTARSSKEHAGSRRTGKLPEDPLFTQPYTPGTFSGE 463


>gi|254443370|ref|ZP_05056846.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198257678|gb|EDY81986.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 469

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 176/419 (42%), Positives = 241/419 (57%), Gaps = 12/419 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL P++V AV   GY +P+PIQ K IP +L+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MPFATLGLRPEIVSAVTAKGYTEPSPIQAKAIPAILEGRDVLGGAQTGTGKTAAFSLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   + + PR LIL PTRELAAQV  +   YGK  +L  A   GG+    Q  KL 
Sbjct: 61  QRLSESEFKNKRPRALILAPTRELAAQVHQSILDYGKGVDLHSACFFGGVNINPQISKLR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+++ TPGR+LD   R +  +  IE LV+DEADRMLDMGFI  I+ I  L+P  RQ 
Sbjct: 121 RGLDIIVATPGRLLDLCQRREANLGAIETLVLDEADRMLDMGFIHDIRKILKLLPHDRQN 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT   +++K++++ L+NP  +EV   +STA+ I     +      K        L 
Sbjct: 181 LFFSATYAKDVKKLADSILRNPVEVEVAPRNSTADQIAQEAYSIGQ---KNKREALSNLI 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  ++F   K     L   L+  G +  AIHGN  Q +R + L +FK   I+++V
Sbjct: 238 KDGDWKQVLVFTRTKHGANRLAKQLDSDGITAAAIHGNKSQSARERALQDFKTNYIRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV NF++PN  E+Y+HRIGRTGRAG+ GKA +LV  E+  ++  I
Sbjct: 298 ATDIAARGIDIIDLPHVVNFELPNIPEDYVHRIGRTGRAGKKGKAISLVCSEEEAYLVDI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           EK+++++V            P  KI    H   R  NP   K T   R  + +    S 
Sbjct: 358 EKVLKREVPLFE------LSPRGKIG---HQVQRIANPKKPKKTAVSRPPRQHPRPDSR 407


>gi|295689524|ref|YP_003593217.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295431427|gb|ADG10599.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
           21756]
          Length = 524

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 196/375 (52%), Positives = 256/375 (68%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+DLGLSP  + AV D GY   TPIQ + IP+ L   DV GIAQTGTGKTA+F LP++ 
Sbjct: 3   EFSDLGLSPTTLQAVADTGYTTATPIQAQAIPVALAGQDVLGIAQTGTGKTAAFTLPLID 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ GRA+ RMPR L++ PTRELA QVA +FEKY K   L+ ALLIGG+ F  Q KKL+R
Sbjct: 63  KLQSGRAKARMPRALVIAPTRELADQVASSFEKYAKGTKLSWALLIGGVSFGDQEKKLDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+LDHF RGKLLM  ++ LV+DEADRMLDMGFIP I+ I  + P  +QTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKKQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+ ++++ FL++P RIEV  P++T   I    V   +   K   L  + L  
Sbjct: 183 FFSATMPPEITRLTKQFLRDPVRIEVARPATTNANITQLLVKVPSSDPKAKRLALRALIE 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  ++ GI+FCN+K  V  +  SL+  G+    IHG++DQ  RMK L++F+ G ++++VA
Sbjct: 243 KAQIETGIVFCNRKTEVDIVAKSLKVHGYDAAPIHGDLDQTQRMKTLADFRSGALKILVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIP V HVFN+DVP+ A++Y+HRIGRTGRAGR G  + LV   D K  D + 
Sbjct: 303 SDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRTGITYMLVTPADDKGFDKVV 362

Query: 362 KLIEKKVDWLNGDLS 376
           KLI    D    +L 
Sbjct: 363 KLIGSTPDEEKLELD 377


>gi|51892785|ref|YP_075476.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51856474|dbj|BAD40632.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 526

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 163/384 (42%), Positives = 236/384 (61%), Gaps = 8/384 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL LS KV+ A+ D G+ +P+PIQ + IP +LQ  DV G AQTGTGKTA+F +P++
Sbjct: 6   LTFRDLALSEKVLKALDDMGFEEPSPIQAQAIPALLQGKDVIGQAQTGTGKTAAFGVPIV 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  G+  V+    L+L PTRELA QVA+   K G++  +    + GG   E Q + L 
Sbjct: 66  ERLVPGQRAVQ---ALVLTPTRELAIQVAEEITKIGRHARVKTIAIYGGQSIERQIRSLR 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV+I TPGRILDH  R  L ++ + ++V+DEAD MLDMGFI  I+ I    P  RQT
Sbjct: 123 FGVDVVIGTPGRILDHLGRSTLDLSQVRMVVLDEADEMLDMGFIEDIEKILQNTPAERQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+++++  ++++P  I V     T   I+  F      +  +       + 
Sbjct: 183 LLFSATMPPEIRRLAGRYMRDPITISVTPQQLTVPQIDQYFCEVRPSFKTEA---LTRIL 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + ++ GI FC  KK V  L  +L+ +G+    IHG+++Q  R +++S FKEG I+L+V
Sbjct: 240 DIENVERGICFCRTKKGVDELVEALQARGYQAEGIHGDMNQAQRNRVMSRFKEGYIELLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI DV HVFN+D+P   E+Y+HRIGRTGRAGR G A TLV   +   +  I
Sbjct: 300 ATDVAARGLDISDVTHVFNYDIPQDPESYVHRIGRTGRAGRTGTAITLVTPREFPQLRLI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E++I+ ++      + +L+   EK
Sbjct: 360 ERVIKARLQRRP--VPTLSDVAEK 381


>gi|301162651|emb|CBW22198.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 638R]
          Length = 427

 Score =  188 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 161/431 (37%), Positives = 246/431 (57%), Gaps = 9/431 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY  PTPIQ ++IP++LQ  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MTFENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K   R    + L+L PTRELA Q+ ++FE YG+   L  A++ GG+  + Q   L 
Sbjct: 61  QKLYKTDHRKG-IKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALR 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +L+ TPGR+LD  ++G + +++++  V+DEADRMLDMGFI  I+ I  L+P  RQT
Sbjct: 120 SGIQILVATPGRLLDLISQGFISLSSLDFFVLDEADRMLDMGFIHDIKRILKLLPARRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++ ++ + L  P+++EV   SST + I         +  K   +      
Sbjct: 180 LFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKEKKDLLIHLL--- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++++ +IF   K     L   L K G    AIHGN  Q +R + L+NFK  T++ ++
Sbjct: 237 KDTSIESVLIFTRTKYGADKLARVLTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+++PN  E Y+HRIGRTGRAG  G A +    E++ ++  I
Sbjct: 297 ATDIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLKDI 356

Query: 361 EKLIEKKVDWLNGDL----SSLNPPLEKI-DIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           +KLI KK+  +          +    EK  +I     A K     + +  F RRKK  ++
Sbjct: 357 QKLIGKKIPVVKDHPFVTTEGIKAQEEKQEEIKVKAKANKTYRGSRANGDFWRRKKQKTN 416

Query: 416 QKSHIPLKESE 426
           Q S    ++ +
Sbjct: 417 QPSSTKQEKRK 427


>gi|261880679|ref|ZP_06007106.1| ATP-dependent RNA helicase DeaD [Prevotella bergensis DSM 17361]
 gi|270332631|gb|EFA43417.1| ATP-dependent RNA helicase DeaD [Prevotella bergensis DSM 17361]
          Length = 560

 Score =  188 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 139/429 (32%), Positives = 239/429 (55%), Gaps = 22/429 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ A+ D  +   TP+Q K IP +L+  D+ G+AQTGTGKTA+++LP+L
Sbjct: 1   MKFEELNLSNDILDALYDMNFEDCTPVQEKCIPEILKGRDLMGVAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP----FEAQN 116
           +++++G         +I+ PTRELA Q+    + +  + +   ++ + G      ++ + 
Sbjct: 61  SMIDEGNYPKNSVNCVIMSPTRELAQQIDQAMQGFAYHLDTVSSVAVYGGNDGNRYDQEM 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K +  GADV+I TPGR++ H   G + +  +   V+DEADRMLDMGF   I  I S +P 
Sbjct: 121 KSMRLGADVIIATPGRLISHITMGNIDLGKVNFFVLDEADRMLDMGFSDDIMKIASYLPK 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             QT++FSATM ++++K+++N      +       + ++  E    + Y  Y+ +   + 
Sbjct: 181 NCQTIMFSATMPNDIEKMAQNL----LKNPAEVKLAVSKPAEKIKQSAYVCYTTQKIEII 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + +     +K  IIF   K+ V  +  +L +   +   +H ++DQ  R  I+  FK G I
Sbjct: 237 KHIFKAGDLKRVIIFSGSKQKVKQINQALAQLKINSGEMHSDLDQSQRDDIMYKFKSGQI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ ARG+DI D+  V N+DVP  +E+Y+HRIGRT RA R G A TLV ++D+  
Sbjct: 297 DVLVATDIVARGIDIDDIAMVINYDVPRDSEDYVHRIGRTARADRDGVAITLVNEDDMFA 356

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKI-DIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
              IE+ ++K+++         NP  E + +   ++ +RK    P K     +R++N   
Sbjct: 357 FHKIEQFLDKEIEK--------NPLPEGMKEGPDYDTSRKPRRTPAK-----KRRRNDRE 403

Query: 416 QKSHIPLKE 424
           + +H   K+
Sbjct: 404 ETAHKKTKQ 412


>gi|260912300|ref|ZP_05918851.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260633601|gb|EEX51740.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 447

 Score =  188 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 135/421 (32%), Positives = 232/421 (55%), Gaps = 9/421 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  +   TPIQ   IP +L+  D+ G+AQTGTGKTA+++LP++
Sbjct: 1   MTFEELDLNDNVLDALYDMRFETCTPIQEHCIPQILEGKDILGVAQTGTGKTAAYLLPIM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP----FEAQN 116
           ++L+ G         +I+ PTRELA Q+    + +G   +   +L I G      ++ + 
Sbjct: 61  SMLDDGGFPHDAINCIIMSPTRELAQQIDQAMQGFGYYLDSVSSLAIYGGNDGNRYDQEI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  GAD++I TPGR + H   G + ++ +   V+DEADRMLDMGF   I  I   +P 
Sbjct: 121 KSLRLGADIIIATPGRFISHIQLGNVDLSKVSFFVLDEADRMLDMGFSEDIMTIAKQLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T QT++FSATM  +++++++  L+NP  I++       +  +  ++    Q  K    + 
Sbjct: 181 TCQTIMFSATMPPKIEQLAKTLLKNPVEIKLAVSKPAEKIAQKAYLCYEPQKLK----VL 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q +    ++   IIF  +K+ V  +  +L +   +   +H ++ Q  R +++  FK G  
Sbjct: 237 QDIFKAGSLNRVIIFSGKKQKVKEINRALVRMKVNSDEMHSDLSQEERDRVMFKFKSGAT 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ +RG+DI D+  V N+DVP+  E+Y+HRIGRT RA R G A TL++ +D+ +
Sbjct: 297 DVLVATDILSRGIDIDDITMVINYDVPHDVEDYVHRIGRTARAERDGVAITLISDQDVYY 356

Query: 357 IDAIEKLIEKKVDWLN-GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
              IE+ +EK ++ +   D     P  +    AQ     + +   ++  G  R   N ++
Sbjct: 357 FQQIERFLEKDIEKVPLPDGIGEGPEYKTAPRAQQRGGARGSHGGRQRHGQSRGGHNRNA 416

Query: 416 Q 416
           +
Sbjct: 417 K 417


>gi|77917983|ref|YP_355798.1| putative ATP-dependent RNA helicase [Pelobacter carbinolicus DSM
           2380]
 gi|77544066|gb|ABA87628.1| putative ATP-dependent RNA helicase [Pelobacter carbinolicus DSM
           2380]
          Length = 435

 Score =  188 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 157/436 (36%), Positives = 249/436 (57%), Gaps = 12/436 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           MDF++L L P+++ A+ D GY  PTPIQ + +P  L   D+   A TGTGKTA+F+LP +
Sbjct: 1   MDFSELKLDPRILKALTDCGYHVPTPIQAQAVPEALAGRDLIASAGTGTGKTAAFMLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +  K   R   PR L+L PTRELA QV D    YGK   LT A+L+GG+P+  Q + L
Sbjct: 61  QRLTVKIARRKGAPRMLVLAPTRELAGQVMDAARVYGKYLGLTTAVLLGGVPYRDQFRAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR+LDH  R  + ++ +E+LV+DEADRMLDMGF   +  + +  P  RQ
Sbjct: 121 AKPLDLVVATPGRLLDHLQRRSIDLSCLEMLVLDEADRMLDMGFKEDVDKVCAAAPRQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++F+AT+ D +QK++   L +P RI++    + ++ IE        +  K    L Q L
Sbjct: 181 TMMFTATLNDAMQKMARRLLDDPFRIDIAVVKNVSDHIEQHLHVADNRQHKNR--LLQHL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   I+F   K++  +L   L  QG+   A+HG+++Q +R + + + + G I+++
Sbjct: 239 LKHSDISQAIVFSATKRDADSLARDLSAQGYRAAALHGDMNQGARNRTVRDLRRGRIRVL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HVFN+D+P  AE+Y+HRIGRTGRAG  G A + V+  ++  +  
Sbjct: 299 VATDVAARGLDVAGISHVFNYDLPKFAEDYVHRIGRTGRAGATGVAISFVSGAEVSALRR 358

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS-----TGFDRRKKNYS 414
           I+  I +++     ++  L P       +     R     P +S     + F  RK+   
Sbjct: 359 IQHFIGRELPR--REIPGLEPRFPLRAASAEGRRRYKGNGPNRSGRKPASYFSGRKERQG 416

Query: 415 --SQKSHIPLKESEKI 428
             S++S       E++
Sbjct: 417 GCSERSRGQSAARERL 432


>gi|259500990|ref|ZP_05743892.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners DSM 13335]
 gi|302190561|ref|ZP_07266815.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus iners AB-1]
 gi|309803755|ref|ZP_07697841.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 11V1-d]
 gi|309804668|ref|ZP_07698733.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 09V1-c]
 gi|309806978|ref|ZP_07700960.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 03V1-b]
 gi|309808565|ref|ZP_07702461.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 01V1-a]
 gi|309809614|ref|ZP_07703471.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           2503V10-D]
 gi|312871555|ref|ZP_07731648.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           3008A-a]
 gi|312872588|ref|ZP_07732656.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2062A-h1]
 gi|312874281|ref|ZP_07734313.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2052A-d]
 gi|312874733|ref|ZP_07734752.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2053A-b]
 gi|315653950|ref|ZP_07906866.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners ATCC 55195]
 gi|325912398|ref|ZP_08174793.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           143-D]
 gi|325913097|ref|ZP_08175467.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           60-B]
 gi|329920540|ref|ZP_08277272.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           1401G]
 gi|259167684|gb|EEW52179.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners DSM 13335]
 gi|308164164|gb|EFO66425.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 11V1-d]
 gi|308166060|gb|EFO68278.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 09V1-c]
 gi|308166598|gb|EFO68795.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 03V1-b]
 gi|308168193|gb|EFO70315.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 01V1-a]
 gi|308170095|gb|EFO72131.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           2503V10-D]
 gi|311089478|gb|EFQ47903.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2053A-b]
 gi|311090154|gb|EFQ48566.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2052A-d]
 gi|311091950|gb|EFQ50326.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092950|gb|EFQ51301.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           3008A-a]
 gi|315488646|gb|EFU78292.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners ATCC 55195]
 gi|325475740|gb|EGC78911.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           143-D]
 gi|325477518|gb|EGC80660.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           60-B]
 gi|328936216|gb|EGG32669.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           1401G]
          Length = 487

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 147/384 (38%), Positives = 230/384 (59%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L P+++ A+  AG+ + TPIQ KTIPLVL   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELNLKPELLKAIKRAGFEEATPIQEKTIPLVLSGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+K   +    + LI+EPTRELA Q  +   + G++ N  V ++ GG     Q + L+
Sbjct: 61  QTLDK---KQEGIQALIIEPTRELAIQTQEELFRLGRDENAHVQVVYGGADIRRQIRSLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  ++L+ TPGR+LDH  R  + +++++ +++DEAD MLDMGFI  I++I +      QT
Sbjct: 118 QVPNILVGTPGRLLDHLKRRTINLSHLKHVILDEADEMLDMGFIQDIESILTFASNDHQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + ++ E F+ +P+ +++ +   TA  I             +   +   L 
Sbjct: 178 LLFSATMPKPILQIGEKFMHDPQIVQIKSKELTANLI---DQYFVRLKENEKFDILCRLI 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  ++F   K+ V  L    + +G+    IHG++ Q  RM +L  FK+G + ++V
Sbjct: 235 DVQDPELSVVFGRTKRRVDELTRGFQARGYDAAGIHGDLTQTKRMSVLKRFKQGKLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  I
Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGKNGMSITFVTPNEIGYMKTI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E+L  KK       ++ L PP +K
Sbjct: 355 ERLTRKK-------MTPLRPPSDK 371


>gi|260592210|ref|ZP_05857668.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           veroralis F0319]
 gi|260535844|gb|EEX18461.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           veroralis F0319]
          Length = 573

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 236/448 (52%), Gaps = 21/448 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L+ KV+ A+ D  + K TP+Q K IP +L+ HDV G+AQTGTGKTA+++LP+L
Sbjct: 1   MYFEDLDLNDKVLDALYDMRFDKCTPVQEKCIPEILKGHDVLGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP----FEAQN 116
           + L  G         +I+ PTRELA Q+    + +    N    + + G      ++ + 
Sbjct: 61  SKLADGGYPESAINCVIMSPTRELAQQIDQAMQGFAYYLNGVSCVAVYGGNDGNRYDQEL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  GADV+I TPGR + H + G + ++ +   ++DEADRMLDMGF   I  I   +P 
Sbjct: 121 KSLSLGADVVIATPGRFISHLSLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKKLPN 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T QT++FSATM  +++++++  L+NP  I++       +         Y  Y  +   + 
Sbjct: 181 TCQTIMFSATMPKKIEELAKTLLKNPVEIKLAVSKPAEKI----HQMAYVCYETQKMGIL 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + +     MK  IIF   K+ V  +  +L ++  +   +H ++DQ  R  I+  FK G +
Sbjct: 237 KDVFKGGNMKRVIIFSGSKQKVKRIAGALSRKHINCGEMHSDLDQEQRNDIMFKFKSGQV 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ +RG+DI D+  V N+DVP+  E+Y+HRIGRT RA   G A TLV  +DI  
Sbjct: 297 DVLVATDIVSRGIDIDDITMVINYDVPHDVEDYVHRIGRTARADHDGTAITLVNADDIYF 356

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN--YS 414
              IE  + K+++ +              D        K+N  P++ +    R+KN  Y 
Sbjct: 357 FQQIESFLGKEIEKVQLP-----------DGLGEAPEYKSNGKPKRGSAKSIRRKNRDYQ 405

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADS 442
           S K        ++  + +   Q++  + 
Sbjct: 406 SHKDKKQGNNKQRSRRPEPQSQDSFDNK 433


>gi|148262453|ref|YP_001229159.1| DEAD/DEAH box helicase domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146395953|gb|ABQ24586.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
           Rf4]
          Length = 453

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 156/413 (37%), Positives = 233/413 (56%), Gaps = 3/413 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F  L LSP ++ A+   GY  PTPIQ + IPL L   D+   AQTGTGKTA+F LP +
Sbjct: 1   MSFETLQLSPSILKAIAVCGYTTPTPIQEQAIPLALAGKDLIASAQTGTGKTAAFTLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +        + PR L+L PTRELA QV D    YGK   +    ++GG+P+  Q + L
Sbjct: 61  QRLSTPSPINGKGPRILVLTPTRELANQVTDAVRNYGKFMRVRSGAILGGMPYREQLQLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++DH  RG++ ++ +E+L++DEADRMLDMGF   +  I +  P  RQ
Sbjct: 121 SQPVDLIVATPGRLIDHLERGRINLSRLELLILDEADRMLDMGFSDDVDKIAAAAPANRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLF+ATM D + K+++  L++P RIE+    ++ + IE           K    + Q L
Sbjct: 181 TLLFTATMDDVMAKLAQRLLKDPVRIEIAGQKTSHDQIEQRLHVVDNLQHKNR--MLQHL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +   +   IIF   K++   L   L  QG +  A+HG++ Q +R K ++N + G ++L+
Sbjct: 239 IADGNLTKAIIFSATKRDADMLARELHAQGHAAAALHGDMTQNARNKTITNMRRGKVRLL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV NFD+P  AE+Y+HRIGRTGRAG  G A + V+  DI ++D 
Sbjct: 299 VATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFVSLNDINYLDR 358

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           IE+   + +            PL ++  +       N        G  RR+  
Sbjct: 359 IERYTGQTLPLHVIPGLEPTRPLRRVSTSGKRSQPANGRGKTPYAGGQRRQGK 411


>gi|316933048|ref|YP_004108030.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315600762|gb|ADU43297.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 473

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 175/464 (37%), Positives = 254/464 (54%), Gaps = 18/464 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL+  +  A+ +  Y+ PTPIQ +TIPL L   DV GIAQTGTGKTASF LP+L 
Sbjct: 9   SFQDFGLADPISRALKEENYLTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILH 68

Query: 62  ILEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L + R +       +L   PTREL+ Q+ D+F  YG++ +LT  L IGG+P   Q + L
Sbjct: 69  RLLQNRIKPTSKTCRVLVLSPTRELSGQILDSFNAYGRHIHLTATLAIGGVPMGRQVRSL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR+LD      L +  +E LV+DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 129 MGGVDVLVATPGRLLDLVQGNALKLTQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM  ++  ++E  L++P R+ V   SST E I    +            +   L
Sbjct: 189 TLFFSATMPKDIADLAEQMLRDPARVAVTPVSSTVERINQRVIQLDHSAK---PAVLAQL 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              + +   ++F   K     +   L + G +  AIHGN  Q  R ++L+ F+ G ++ +
Sbjct: 246 LKDEKVNQALVFTRTKHGADKVVKGLARAGITADAIHGNKSQNYRERVLAAFRTGELRTL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HVFNFD+PN  E Y+HRIGRT RAG  G A +L A E++ ++  
Sbjct: 306 VATDIAARGIDVDGVSHVFNFDLPNIPETYVHRIGRTARAGADGTAISLCAGEEMAYLRD 365

Query: 360 IEKLIEKKVDWLN-----GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           IEKLI+  +   +        +   PP      + H H  +N   P +  G +RR++  +
Sbjct: 366 IEKLIKVSLPKEDRRTPGAHAAPTPPPHRGPRQSPHGHPPRNGDAPTR--GKNRRRRGPA 423

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
           +  +  P     + +   Q    +  +  G +G   AF+  KNR
Sbjct: 424 AGPARQPEASRHETAARPQ----HSGNGEGLQG--VAFLQRKNR 461


>gi|317503390|ref|ZP_07961434.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae
           DSM 15606]
 gi|315665485|gb|EFV05108.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae
           DSM 15606]
          Length = 542

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 150/449 (33%), Positives = 254/449 (56%), Gaps = 12/449 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  + K TP+Q K IP +L  +DV G+AQTGTGKTA+++LP+L
Sbjct: 1   MYFDELELNNSVLDALYDMRFEKCTPVQEKCIPEILNGNDVLGVAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP----FEAQN 116
           + L+ G    +    LI+ PTRELA Q+    + +G   N   ++ + G      ++ + 
Sbjct: 61  SKLDDGNYPEKAINCLIMSPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQEL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P 
Sbjct: 121 KSLQLGADVVIATPGRLISHISLGNVDLSKVSFFILDEADRMLDMGFSDDILKIAKKLPQ 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + QT++FSATM D+++++++  L+NPK I++       +  +      Y  Y  +   + 
Sbjct: 181 SCQTIMFSATMPDKIEELAKTLLKNPKVIKLAVSKPAEKIKQS----AYVCYETQKMGII 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + +   D +K  IIFC  K  V  +  +L+++  +   +H ++DQ  R +++  FK G  
Sbjct: 237 KDIFKSDDLKRVIIFCGSKMKVKQVAGALQRKHINCGEMHSDLDQAMRDEVMFKFKSGQF 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ ARG+DI D+  V N+DVP+ AE+Y+HRIGRT RA R G A T V+ +DI +
Sbjct: 297 DVLVATDIVARGIDIDDISMVINYDVPHDAEDYVHRIGRTARAAREGSAITFVSDDDIYY 356

Query: 357 IDAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
              IEK + K+VD   L   L             +   A+    I ++ T    +K+   
Sbjct: 357 FQLIEKFLGKQVDKTPLPEGLGEGPEYKSAGKPKRGTSAKSRRRINREQTAHKDKKQQNR 416

Query: 415 SQKSHIPLKESE--KISKLQQDIQENDAD 441
            Q++++   +S+  +++K   + +E ++ 
Sbjct: 417 RQRNNVADSQSQNTEVAKDSHNNKERNSQ 445


>gi|118594179|ref|ZP_01551526.1| putative ATP-dependent RNA helicase protein [Methylophilales
           bacterium HTCC2181]
 gi|118439957|gb|EAV46584.1| putative ATP-dependent RNA helicase protein [Methylophilales
           bacterium HTCC2181]
          Length = 427

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 153/426 (35%), Positives = 235/426 (55%), Gaps = 12/426 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    L   ++ A+ +AGY +PTPIQ K+IP ++    V   AQTGTGKTA+FVLP+L
Sbjct: 1   MSFQTFNLDASILKAIQEAGYDQPTPIQTKSIPEIMLNKHVLASAQTGTGKTAAFVLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K R+  R PR LI+ PTRELA Q+ D+ +KY +   +    + GGI +  QN+   
Sbjct: 61  DKLTKNRSEGRGPRVLIVSPTRELATQITDSIKKYSRYLRINSITITGGISYGLQNRMFS 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+L+ TPGR+LD + + K+    +E++++DEADRMLDMGF+P I+ I +     +Q 
Sbjct: 121 KPIDILVATPGRLLDLYQQKKINFKGLEVMILDEADRMLDMGFVPDIRKIYNATSKKQQM 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT    +QK+++ FL NP  I +    S  + I+        Q  K    +     
Sbjct: 181 LMFSATFDPPIQKIAQEFLTNPVTISIKPDVSGHKNIKQLIYFADNQSHK--QQMLDHFI 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +   IIF   K+    L   L        A+HG++ Q SR K ++ FK    +++V
Sbjct: 239 KNDEVTQAIIFTATKRMADQLSDQLYHSDIKTSALHGDMSQGSRTKTINRFKRNETKILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RG+D+ ++ HVFN+D+P  AE+YIHRIGRTGRA   G A +LV+  D + +  I
Sbjct: 299 ATDLASRGIDVKNISHVFNYDMPRFAEDYIHRIGRTGRANNKGIAISLVSPTDREFLRKI 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+    K++     ++S+      I        RK+     K   F ++ K + ++ +  
Sbjct: 359 ERFTNLKIE-----IASIPGMEATILKEAKAPKRKS-----KGRSFVKKGKVFKNEANAK 408

Query: 421 PLKESE 426
               S+
Sbjct: 409 KRIRSK 414


>gi|28377407|ref|NP_784299.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
 gi|254555590|ref|YP_003062007.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
 gi|300769652|ref|ZP_07079536.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308179612|ref|YP_003923740.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28270239|emb|CAD63140.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
 gi|254044517|gb|ACT61310.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
 gi|300492805|gb|EFK27989.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308045103|gb|ADN97646.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 528

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 151/397 (38%), Positives = 236/397 (59%), Gaps = 13/397 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS  ++ AV  AGY + TPIQ +TIP+VL+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFTELGLSDSLLKAVNRAGYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+     ++    L++ PTRELA Q  +   + GK+    V ++ GG     Q + L+
Sbjct: 61  QRLDFDNHNIQ---ALVVSPTRELAIQTQEEIFRLGKDERAKVQVVYGGADIRRQIRNLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V++ TPGR+LDH  RG + ++++++LV+DEAD ML+MGF+  I++I   VP  RQT
Sbjct: 118 QNPQVIVGTPGRLLDHIRRGTVKLDHVKMLVLDEADEMLNMGFLEDIESIIKQVPDERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  E++++   F++ P  +++ +   TA+T++  +V                  
Sbjct: 178 MLFSATMPPEIKRIGVQFMKEPHHVKIKSKEMTADTVDQYYVKAKEFEKFDIMTRL---F 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L   LE +G++   IHG++ Q+ R +I+  FK G + ++V
Sbjct: 235 DVQAPELTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFKAGKLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV+N+D+P   ++Y+HRIGRTGRAG  G + T V   +++++  I
Sbjct: 295 ATDVAARGLDVSGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSLTFVTPNEMEYLRVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           EKL +K+       +  L PP E    A    A + N
Sbjct: 355 EKLTKKR-------MLPLKPPTESEAFAGQLAAAEAN 384


>gi|212633675|ref|YP_002310200.1| DEAD box helicase [Shewanella piezotolerans WP3]
 gi|212555159|gb|ACJ27613.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 482

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 174/452 (38%), Positives = 266/452 (58%), Gaps = 5/452 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS +++ AV + GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG     +  R L+L PTRELAAQV ++ E YGKN  L  A++ GG+    Q  KL
Sbjct: 61  ELLSKGNKAPAKQVRALVLTPTRELAAQVGESVEIYGKNLPLKSAVIFGGVGIGPQISKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD +N+  +  + +E+LV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 SRGVDILVATPGRLLDLYNQRAVNFSQLEVLVLDEADRMLDMGFIHDIKKILAILPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +D+++K+++  + NP  I V   ++TA T++               +     
Sbjct: 181 NLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATANTVKQWICPVDKGQKASVLVKL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  ++F   K     L  +L+ +G +  AIHGN  Q +R K L+ FK G ++++
Sbjct: 238 IKQHDWQQVLVFSRTKHGANRLAKNLDAKGITAAAIHGNKSQGARTKALAEFKSGDVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+IK +  
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSDEEIKLLRD 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE LI++ ++    +    +  L + D+ + +H +   P    S G ++++ N   + ++
Sbjct: 358 IELLIKQNLERRVIEGFEPSHKLPETDLTRKSHGQNKGPRNSNSRGSNQKRSNSGGKPAN 417

Query: 420 IPLKESEKISKL-QQDIQENDADSLGFRGNMP 450
              +   K     + + ++        RG+ P
Sbjct: 418 RQSQSRNKQDNAGKSEHKDGQRSGEAARGHKP 449


>gi|218889170|ref|YP_002438034.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
 gi|218769393|emb|CAW25153.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
          Length = 639

 Score =  187 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 170/454 (37%), Positives = 247/454 (54%), Gaps = 15/454 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           M F+ LGLS  +  AV  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP  
Sbjct: 1   MSFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 59  -----MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                      + R   R  R L+L PTRELAAQV D+F+ Y ++  L    + GG+   
Sbjct: 61  ERLFPAGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L +G DVL+  PGR+LD   + K+ ++++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQIQALAKGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A   +   
Sbjct: 181 LPHKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALL 240

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                  +    +  ++F   K     L   L K G    AIHGN  Q +R K L++FK 
Sbjct: 241 AHL---VTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             ++++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            K + AIEK+  +++   +GD    +P     ++AQ          P++      R+ + 
Sbjct: 358 EKLLKAIEKMTRQRIP--DGDAQGFDPEAVLPEVAQPEPREAPQKQPRRD---KERRSSR 412

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             +         +      QD  E  A     RG
Sbjct: 413 ERKPKDAQASNPDSNVAAAQDGTEKPAGKRRRRG 446


>gi|302134631|ref|ZP_07260621.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato NCPPB 1108]
          Length = 629

 Score =  187 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 177/478 (37%), Positives = 269/478 (56%), Gaps = 20/478 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L          R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPP----LEKIDIAQHNHARKNNPIPQKSTGF 406
            K + +IE++ ++K+   D +  D++++        E+ D+     AR       K+ G 
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARADGDKNNGG 417

Query: 407 DRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            R K     + +  P   +    +  +  +E      G   +    + P    + +D+
Sbjct: 418 RRDKGKDKGKDN--PAAAAATGERPARPPREKKPRE-GTPRSEQRAVQPSTPRQASDR 472


>gi|237747736|ref|ZP_04578216.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
 gi|229379098|gb|EEO29189.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
          Length = 469

 Score =  187 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 171/465 (36%), Positives = 261/465 (56%), Gaps = 31/465 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GLSP ++ A+ D GYV PTPIQ++ IPLVL+  DV G AQTGTGKTA + LPML 
Sbjct: 16  KFEDFGLSPDILKALDDLGYVSPTPIQVQAIPLVLEGKDVMGAAQTGTGKTAGYSLPMLQ 75

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QV ++ ++Y K   +  A++ GG+   +Q 
Sbjct: 76  SLLFSANTSMSPARHPVRALILVPTRELADQVFEDVKRYAKYTPVKSAVVFGGVDISSQT 135

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G ++LI TPGR+LDH  +  + +++ +ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 136 SILRAGVEILIATPGRLLDHVQQKNVNLSHTQILVLDEADRMLDMGFLPDLQRIVNLLPK 195

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +++++K++ +F+++P  +EV   ++TAE ++                  
Sbjct: 196 QRQNLLFSATFSNDIKKLARSFMKDPVTVEVARQNATAENVKQTVYRIEESEKNAAVEHL 255

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
              ++Q   +  +IF N K     L   LE++G    AIHG+  Q  RM  L  FK G+I
Sbjct: 256 LKDRNQ---EQVLIFSNTKAGASRLARQLERKGMKASAIHGDKTQAERMATLEAFKSGSI 312

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL I ++  V NFD+P  AE+Y+HRIGRTGRAG  G+A +L +++D + 
Sbjct: 313 DILVATDVAARGLHIEELPCVINFDLPFVAEDYVHRIGRTGRAGSKGEAISLYSEKDERL 372

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKI-DIAQHNH----------ARKNNPIPQKSTG 405
           +  IEKL ++++            PLEK+ D  +  H           ++ +  P KS G
Sbjct: 373 LKEIEKLTKRQL------------PLEKLTDFEREKHVSPETGGTAYGKRFDRSPYKSVG 420

Query: 406 FDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMP 450
            +++ K+    + ++P          +  ++          G +P
Sbjct: 421 LEKKSKDPWFDQPYVPSATKSDKESEKPALKTVKKPIAALLGGLP 465


>gi|167036018|ref|YP_001671249.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida GB-1]
 gi|166862506|gb|ABZ00914.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 626

 Score =  187 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 173/457 (37%), Positives = 260/457 (56%), Gaps = 18/457 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+ 
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 60  ------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                     +  R   R PR L+L PTRELAAQV D+F+ Y ++  L  A + GG+   
Sbjct: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + +G DVL+  PGR+LD   +GK+ + ++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  +++  L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRAL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +Q   +  ++F   K     L   LEK G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            +++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A ++VA ++
Sbjct: 298 NSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD--- 407
            K + +IE++ ++++   D +  D S +     ++     N  R       +  G     
Sbjct: 358 EKLLKSIERVTKQRIQDGDLMGFDASQVEAEKPEVRERPQNSGRGGRNQQGRGEGGKDAN 417

Query: 408 --RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADS 442
             R+ K  + Q++     + E     QQ  ++     
Sbjct: 418 GGRKDKGKAKQQAAEKPADKENSGDKQQQPRKPRDKK 454


>gi|313893137|ref|ZP_07826714.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442490|gb|EFR60905.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 523

 Score =  187 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 144/367 (39%), Positives = 224/367 (61%), Gaps = 6/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L +S  V+ A+ D G+ +PTPIQ + IP+ +   D+ G AQTGTGKTA+F LP+L 
Sbjct: 4   KFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V++    IL PTRELA QVA+   K  +  N+T   + GG     Q + L++
Sbjct: 64  RVDGNERHVQVV---ILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++DH +RG +  ++++++V+DEAD ML+MGF+  I  I   +P   QTL
Sbjct: 121 NPQIIVATPGRLMDHMDRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +Q+++E +L  P  I +     T + IE           ++   +   L  
Sbjct: 181 LFSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQ---YYIEVQDRQKFDVLCRLFD 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T +  IIF   K+ V  +   L+K+G+    IHG++ Q+ R  ++  F+EGTI ++VA
Sbjct: 238 IQTPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y HR+GRTGRAG+ G+AFT V   +++H+ AIE
Sbjct: 298 TDVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIE 357

Query: 362 KLIEKKV 368
           +L ++K+
Sbjct: 358 RLTKRKI 364


>gi|238018738|ref|ZP_04599164.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748]
 gi|237865209|gb|EEP66499.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748]
          Length = 521

 Score =  187 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 144/367 (39%), Positives = 224/367 (61%), Gaps = 6/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L +S  V+ A+ D G+ +PTPIQ + IP+ +   D+ G AQTGTGKTA+F LP+L 
Sbjct: 4   KFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V++    IL PTRELA QVA+   K  +  N+T   + GG     Q + L++
Sbjct: 64  RVDGNERHVQVV---ILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++DH +RG +  ++++++V+DEAD ML+MGF+  I  I   +P   QTL
Sbjct: 121 NPQIIVATPGRLMDHMDRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +Q+++E +L  P  I +     T + IE           ++   +   L  
Sbjct: 181 LFSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQ---YYIEVQDRQKFDVLCRLFD 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T +  IIF   K+ V  +   L+K+G+    IHG++ Q+ R  ++  F+EGTI ++VA
Sbjct: 238 IQTPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y HR+GRTGRAG+ G+AFT V   +++H+ AIE
Sbjct: 298 TDVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIE 357

Query: 362 KLIEKKV 368
           +L ++K+
Sbjct: 358 RLTKRKI 364


>gi|269798436|ref|YP_003312336.1| DEAD/DEAH box helicase [Veillonella parvula DSM 2008]
 gi|269095065|gb|ACZ25056.1| DEAD/DEAH box helicase domain protein [Veillonella parvula DSM
           2008]
          Length = 515

 Score =  187 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 144/367 (39%), Positives = 224/367 (61%), Gaps = 6/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L +S  V+ A+ D G+ +PTPIQ + IP+ +   D+ G AQTGTGKTA+F LP+L 
Sbjct: 4   KFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V++    IL PTRELA QVA+   K  +  N+T   + GG     Q + L++
Sbjct: 64  RVDGNERHVQVV---ILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++DH +RG +  ++++++V+DEAD ML+MGF+  I  I   +P   QTL
Sbjct: 121 NPQIIVATPGRLMDHMDRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +Q+++E +L  P  I +     T + IE           ++   +   L  
Sbjct: 181 LFSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQ---YYIEVQDRQKFDVLCRLFD 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T +  IIF   K+ V  +   L+K+G+    IHG++ Q+ R  ++  F+EGTI ++VA
Sbjct: 238 IQTPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y HR+GRTGRAG+ G+AFT V   +++H+ AIE
Sbjct: 298 TDVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIE 357

Query: 362 KLIEKKV 368
           +L ++K+
Sbjct: 358 RLTKRKI 364


>gi|288928387|ref|ZP_06422234.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288331221|gb|EFC69805.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 447

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 127/376 (33%), Positives = 217/376 (57%), Gaps = 8/376 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  +   TPIQ   IP +L+  D+ G+AQTGTGKTA+++LP++
Sbjct: 1   MTFEELDLNDNVLDALYDMRFETCTPIQEHCIPQILEGKDILGVAQTGTGKTAAYLLPIM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP----FEAQN 116
           ++L+ G         +I+ PTRELA Q+    + +G   +   +L I G      ++ + 
Sbjct: 61  SMLDDGGFPHDAINCIIMSPTRELAQQIDQAMQGFGYYLDSVSSLPIYGGNDGNRYDQEI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  GAD++I TPGR + H   G + ++ +   V+DEADRMLDMGF   I  I   +P 
Sbjct: 121 KSLRLGADIIIATPGRFISHIQLGNVDLSKVSFFVLDEADRMLDMGFSEDIMTIAKQLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T QT++FSATM  +++++++  L+NP  I++       +  +  ++    Q  K    + 
Sbjct: 181 TCQTIMFSATMPPKIEQLAKTLLKNPVEIKLAVSKPAEKIAQKAYLCYEPQKLK----VL 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + +     +   IIF  +K+ V  +  +L +   +   +H ++ Q  R +++  FK G  
Sbjct: 237 EDIFKAGHLNRVIIFSGKKQKVKEINRALVRMKINSDEMHSDLSQEERDQVMFKFKSGAT 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ +RG+DI D+  V N+DVP+  E+Y+HRIGRT RA R G A TL++ +D+ +
Sbjct: 297 DVLVATDILSRGIDIDDITMVINYDVPHDVEDYVHRIGRTARAERDGVAITLISDQDVYY 356

Query: 357 IDAIEKLIEKKVDWLN 372
              IE+ +EK+++ + 
Sbjct: 357 FQQIERFLEKEIEKVP 372


>gi|222054409|ref|YP_002536771.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32]
 gi|221563698|gb|ACM19670.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32]
          Length = 451

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 165/436 (37%), Positives = 242/436 (55%), Gaps = 11/436 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F  L LSP ++ A+   GY  PTPIQ + IPL L+  D+   AQTGTGKTA+F LP +
Sbjct: 1   MSFESLQLSPLILKAIAACGYTTPTPIQEQAIPLALEGKDLIASAQTGTGKTAAFTLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +  +     R PR L+L PTRELA QV D    YGK   +T   ++GG+P+  Q + L
Sbjct: 61  ERLSVRSPIPGRGPRILVLTPTRELANQVTDAVRNYGKFIRVTSGAILGGMPYREQLQLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R  D+++ TPGR++DH +RG++ ++ +E+L++DEADRMLDMGF   +  I +  P  RQ
Sbjct: 121 SRPVDLIVATPGRLIDHLDRGRINLSRLELLILDEADRMLDMGFSEDVDRIAAAAPANRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLF+ATM D + K+++  L++P RIE+     T E IE           K    + Q L
Sbjct: 181 TLLFTATMDDVMAKLAQRLLKDPVRIEIAGKKMTHEQIEQRLHVADNLQHKTR--MLQHL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +  T+   IIF   K++   L   L  QG +  A+HG++ Q +R K + N + G I+L+
Sbjct: 239 IADGTVTKAIIFSATKRDADLLARDLHAQGHAAAALHGDMSQNARNKTIHNMRRGKIRLL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV NFD+P  AE+Y+HRIGRTGRAG  G A +  +  D+ ++D 
Sbjct: 299 VATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGATGIAISFASLNDLNYLDR 358

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN------- 412
           IE+   + +            PL ++  +       N        G  RR+         
Sbjct: 359 IERYTGQTLPMHVIPGLEPTRPLRRLSTSGKRSQPGNGRGKTPYAGNGRRQGKDDTKGGG 418

Query: 413 -YSSQKSHIPLKESEK 427
              ++KS  P   S +
Sbjct: 419 FAQARKSSAPRARSSQ 434


>gi|313201469|ref|YP_004040127.1| dead/deah box helicase domain-containing protein [Methylovorus sp.
           MP688]
 gi|312440785|gb|ADQ84891.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688]
          Length = 468

 Score =  186 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 153/410 (37%), Positives = 236/410 (57%), Gaps = 4/410 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F  L L P ++ A+ +AGY  PTPIQ + IP VL  HD+   AQTGTGKTA+F LP +
Sbjct: 3   VTFETLNLHPSILRALEEAGYSTPTPIQAQAIPEVLAGHDLMASAQTGTGKTAAFTLPAL 62

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +   ++ R PR L+L PTRELAAQV D   KYGK        ++GG+P+  QNK L
Sbjct: 63  NLLADIHPSKSRGPRILVLTPTRELAAQVNDAARKYGKFMRARTVSIVGGMPYPLQNKLL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+L+ TPGR+LDH  RG++ M+ +++L++DEADRMLDMGF+P I+ I   +P  RQ
Sbjct: 123 SQPLDILVATPGRLLDHMERGRIDMSRLQMLILDEADRMLDMGFMPDIERINEALPRERQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT    +  +++  L++PK I++         IE           K    L + L
Sbjct: 183 TLMFSATFEGPIANIAKTLLKDPKVIQIAAQKEKHANIEQRLHFVDDMNHK--NKLLEHL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   I+F + K++   L   L   G    A+HG++ Q +R + L+  + G ++++
Sbjct: 241 LIAPDVNQAIVFTSTKRHADLLAEDLYAAGHKSAALHGDMTQGARNRTLTKLRHGDVRVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HV N+D+P  AE+Y+HRIGRTGRAG  G A +  +  D   +  
Sbjct: 301 VATDVAARGIDVQGITHVINYDLPKFAEDYVHRIGRTGRAGNTGVAVSFASHADRHQLRK 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           IE+   ++++    +      P  + D  + ++ R  +  P   +GF  R
Sbjct: 361 IEQYTGQRIEITVIEGFEPKRPAPRTDD-RGSNGRPRSGNPGSKSGFKPR 409


>gi|296386927|ref|ZP_06876426.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 639

 Score =  186 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 170/454 (37%), Positives = 247/454 (54%), Gaps = 15/454 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           M F+ LGLS  +  AV  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP  
Sbjct: 1   MSFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 59  -----MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                      + R   R  R L+L PTRELAAQV D+F+ Y ++  L    + GG+   
Sbjct: 61  ERLFPAGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L +G DVL+  PGR+LD   + K+ ++++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQIQALAKGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A   +   
Sbjct: 181 LPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALL 240

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                  +    +  ++F   K     L   L K G    AIHGN  Q +R K L++FK 
Sbjct: 241 AHL---VTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             ++++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            K + AIEK+  +++   +GD    +P     ++AQ          P++      R+ + 
Sbjct: 358 EKLLKAIEKMTRQRIP--DGDAQGFDPEAVLPEVAQPEPREAPQKQPRRD---KERRSSR 412

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             +         +      QD  E  A     RG
Sbjct: 413 ERKPKDAQASNPDSNVAAAQDGTEKPAGKRRRRG 446


>gi|254243526|ref|ZP_04936848.1| hypothetical protein PA2G_04344 [Pseudomonas aeruginosa 2192]
 gi|126196904|gb|EAZ60967.1| hypothetical protein PA2G_04344 [Pseudomonas aeruginosa 2192]
          Length = 639

 Score =  186 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 170/454 (37%), Positives = 247/454 (54%), Gaps = 15/454 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           M F+ LGLS  +  AV  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP  
Sbjct: 1   MSFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 59  -----MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                      + R   R  R L+L PTRELAAQV D+F+ Y ++  L    + GG+   
Sbjct: 61  ERLFPAGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L +G DVL+  PGR+LD   + K+ ++++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQIQALAKGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A   +   
Sbjct: 181 LPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALL 240

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                  +    +  ++F   K     L   L K G    AIHGN  Q +R K L++FK 
Sbjct: 241 AHL---VTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             ++++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            K + AIEK+  +++   +GD    +P     ++AQ          P++      R+ + 
Sbjct: 358 EKLLKAIEKMTRQRIP--DGDAQGFDPEAVLPEVAQPEPREAPQKQPRRD---KERRSSR 412

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             +         +      QD  E  A     RG
Sbjct: 413 ERKPKDAQASNPDSNVAAAQDGTEKPAGKRRRRG 446


>gi|116054159|ref|YP_788602.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|313111948|ref|ZP_07797737.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           aeruginosa 39016]
 gi|115589380|gb|ABJ15395.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|310884239|gb|EFQ42833.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           aeruginosa 39016]
          Length = 639

 Score =  186 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 170/454 (37%), Positives = 247/454 (54%), Gaps = 15/454 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           M F+ LGLS  +  AV  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP  
Sbjct: 1   MSFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 59  -----MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                      + R   R  R L+L PTRELAAQV D+F+ Y ++  L    + GG+   
Sbjct: 61  ERLFPAGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L +G DVL+  PGR+LD   + K+ ++++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQIQALAKGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A   +   
Sbjct: 181 LPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALL 240

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                  +    +  ++F   K     L   L K G    AIHGN  Q +R K L++FK 
Sbjct: 241 AHL---VTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             ++++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            K + AIEK+  +++   +GD    +P     ++AQ          P++      R+ + 
Sbjct: 358 EKLLKAIEKMTRQRIP--DGDAQGFDPEAVLPEVAQPEPREAPQKQPRRD---KERRSSR 412

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             +         +      QD  E  A     RG
Sbjct: 413 ERKPKDAQASNPDSNVAAAQDGTEKPAGKRRRRG 446


>gi|15595625|ref|NP_249119.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|9946285|gb|AAG03817.1|AE004480_1 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
          Length = 639

 Score =  186 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 170/454 (37%), Positives = 247/454 (54%), Gaps = 15/454 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           M F+ LGLS  +  AV  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP  
Sbjct: 1   MSFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 59  -----MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                      + R   R  R L+L PTRELAAQV D+F+ Y ++  L    + GG+   
Sbjct: 61  ERLFPAGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L +G DVL+  PGR+LD   + K+ ++++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQIQALAKGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A   +   
Sbjct: 181 LPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALL 240

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                  +    +  ++F   K     L   L K G    AIHGN  Q +R K L++FK 
Sbjct: 241 AHL---VTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             ++++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            K + AIEK+  +++   +GD    +P     ++AQ          P++      R+ + 
Sbjct: 358 EKLLKAIEKMTRQRIP--DGDAQGFDPEAVLPEVAQPEPREAPQKQPRRD---KERRSSR 412

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             +         +      QD  E  A     RG
Sbjct: 413 ERKPKDAQASNPDSNVAAAQDGTEKPAGKRRRRG 446


>gi|194467658|ref|ZP_03073645.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
           100-23]
 gi|194454694|gb|EDX43591.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
           100-23]
          Length = 497

 Score =  186 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 139/368 (37%), Positives = 219/368 (59%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+  +GY + TPIQ +TIP+VL+  DV G AQTGTGKTA+F LP++
Sbjct: 1   MKFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++     I+ PTRELA Q  +   + GK+ ++ V ++ GG     Q K L+
Sbjct: 61  ENVDTENPNIQAI---IISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGR+ DH NR  + +++I+ LV+DEAD ML+MGF+  I++I    P  RQT
Sbjct: 118 QHPQILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++++   F+ +P+ + +     T + ++  +V                  
Sbjct: 178 LLFSATMPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRL---I 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K+ V  L   L  +G++   IHG++ Q  R KI+  FK   + ++V
Sbjct: 235 DVQDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P+  ++Y+HRIGRTGRAG HG + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEI 354

Query: 361 EKLIEKKV 368
           EKL   ++
Sbjct: 355 EKLTRVRM 362


>gi|4409804|gb|AAD20136.1| autoaggregation-mediating protein [Lactobacillus reuteri ATCC
           53608]
          Length = 497

 Score =  186 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 139/368 (37%), Positives = 219/368 (59%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+  +GY + TPIQ +TIP+VL+  DV G AQTGTGKTA+F LP++
Sbjct: 1   MKFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++     I+ PTRELA Q  +   + GK+ ++ V ++ GG     Q K L+
Sbjct: 61  ENVDTENPNIQAI---IISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGR+ DH NR  + +++I+ LV+DEAD ML+MGF+  I++I    P  RQT
Sbjct: 118 QHPQILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++++   F+ +P+ + +     T + ++  +V                  
Sbjct: 178 LLFSATMPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRL---I 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K+ V  L   L  +G++   IHG++ Q  R KI+  FK   + ++V
Sbjct: 235 DVQDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P+  ++Y+HRIGRTGRAG HG + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEI 354

Query: 361 EKLIEKKV 368
           EKL   ++
Sbjct: 355 EKLTRVRM 362


>gi|124515178|gb|EAY56689.1| putative ATP-dependent helicase [Leptospirillum rubarum]
          Length = 444

 Score =  186 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 154/424 (36%), Positives = 233/424 (54%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP+++ A+ D G+  PTPIQ ++IP V+   D+ GIAQTGTGKT  F+LP+L
Sbjct: 1   MTFEALGLSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + +GR      R L+L PTRELA Q+    + Y K  +    LL+GG+ F  Q + L+
Sbjct: 61  HKIAEGRRHGIRNRALVLSPTRELATQIHQAAKDYAKYLHTNAVLLVGGVDFIRQERNLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R  D+++ TPGR+LDH  R  L + N  +++IDEADRMLDMGF+P I  I   +P  RQ+
Sbjct: 121 RNWDIVVATPGRLLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKGRQS 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +Q+++  F  +   + V      ++ I   ++       K   L + L +
Sbjct: 181 LLFSATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVLDE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      IIF   K++  +L  +L   G+   A+HG+  Q  R ++LS F+ G ++++V
Sbjct: 241 GKSETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKVLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + HV N+D+P  AE+Y+HRIGRTGRAGR G+A +     D   + +I
Sbjct: 301 ATDVAARGLDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPADRDIVRSI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E +  K +      +      L K    + +  R  +  P+    F   +      +S  
Sbjct: 361 ETMAGKPIPHSPHSIPLSEQSLRKTFTRRPSFGRPQDRTPRGENRFRTDRGQQGRPRSST 420

Query: 421 PLKE 424
               
Sbjct: 421 SGNR 424


>gi|258511452|ref|YP_003184886.1| DEAD/DEAH box helicase domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478178|gb|ACV58497.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 541

 Score =  186 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 147/383 (38%), Positives = 229/383 (59%), Gaps = 9/383 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+ +V+ A+ D G+ +P+PIQ   IP+VL+  DV G AQTGTGKTA+F +P++ 
Sbjct: 18  SFESFGLNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIPLVE 77

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +          + ++L PTRELA QVA    K  K   +    + GG     Q + L++
Sbjct: 78  RVSTE----PRVQAIVLTPTRELAIQVAGEIRKIAKYKRVRSVPIYGGQSIVHQIRALKQ 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR+LDH +RG L ++++ ++V+DEAD MLDMGFI  I+ I    P  RQT+
Sbjct: 134 GVQIVIGTPGRVLDHIHRGTLSLSDVRMVVLDEADEMLDMGFIDDIEAILRETPSDRQTM 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  +E+++++  ++++P+ I VN    T   I       Y    +        +  
Sbjct: 194 LFSATFPNEVKRLALRYMRDPQHITVNRGEVTVPQI---DQVCYKVLERNKLDSLCRIVD 250

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + ++ GIIFC  K+ V +L  +L  +G+    +HG++ Q  R +++  F++  I+L+VA
Sbjct: 251 SEDIQLGIIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIELLVA 310

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ DV HV N+DVP   E+Y+HRIGRTGRAG+ G A TLV   + K +  IE
Sbjct: 311 TDVAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKLLKQIE 370

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
           + I++K+     ++ SL    E+
Sbjct: 371 REIKQKITV--REVPSLEDVAER 391


>gi|218290125|ref|ZP_03494287.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239834|gb|EED07023.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 465

 Score =  186 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 147/383 (38%), Positives = 228/383 (59%), Gaps = 9/383 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+ +V+ A+ D G+ +P+PIQ   IP+VL+  DV G AQTGTGKTA+F +P++ 
Sbjct: 19  SFESFGLNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIPLVE 78

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +          + ++L PTRELA QVA    K  K   +    + GG     Q + L++
Sbjct: 79  RVSTE----PRVQAIVLTPTRELAIQVAGEIRKIAKYKRVRSVPIYGGQSIVHQIRALKQ 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR+LDH +RG L + ++ ++V+DEAD MLDMGFI  I+ I    P  RQT+
Sbjct: 135 GVQIVIGTPGRVLDHIHRGTLSLGDVRMVVLDEADEMLDMGFIDDIEAILRETPSDRQTM 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  +E+++++  ++++P+ I VN    T   I       Y    +        +  
Sbjct: 195 LFSATFPNEVKRLALRYMRDPQHITVNRGEVTVPQI---DQVCYKVLERNKLDSLCRIVD 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + ++ GIIFC  K+ V +L  +L  +G+    +HG++ Q  R +++  F++  I+L+VA
Sbjct: 252 SEDIQLGIIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIELLVA 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ DV HV N+DVP   E+Y+HRIGRTGRAG+ G A TLV   + K +  IE
Sbjct: 312 TDVAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKLLKQIE 371

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
           + I++K+     ++ SL    E+
Sbjct: 372 REIKQKITV--REVPSLEDVAER 392


>gi|294794656|ref|ZP_06759792.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
 gi|294454986|gb|EFG23359.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
          Length = 515

 Score =  186 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 144/367 (39%), Positives = 224/367 (61%), Gaps = 6/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L +S  V+ A+ D G+ +PTPIQ + IP+ +   D+ G AQTGTGKTA+F LP+L 
Sbjct: 4   KFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V++    IL PTRELA QVA+   K  +  N+T   + GG     Q + L++
Sbjct: 64  RVDGNERHVQVV---ILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++DH +RG +  ++++++V+DEAD ML+MGF+  I  I   +P   QTL
Sbjct: 121 NPQIIVATPGRLMDHMDRGSIKFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +Q+++E +L  P  I +     T + IE           ++   +   L  
Sbjct: 181 LFSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQ---YYIEVQDRQKFDVLCRLFD 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T +  IIF   K+ V  +   L+K+G+    IHG++ Q+ R  ++  F+EGTI ++VA
Sbjct: 238 IQTPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y HR+GRTGRAG+ G+AFT V   +++H+ AIE
Sbjct: 298 TDVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIE 357

Query: 362 KLIEKKV 368
           +L ++K+
Sbjct: 358 RLTKRKI 364


>gi|282849975|ref|ZP_06259358.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
 gi|294792894|ref|ZP_06758041.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
 gi|282580412|gb|EFB85812.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
 gi|294456793|gb|EFG25156.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
          Length = 515

 Score =  186 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 144/367 (39%), Positives = 224/367 (61%), Gaps = 6/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L +S  V+ A+ D G+ +PTPIQ + IP+ +   D+ G AQTGTGKTA+F LP+L 
Sbjct: 4   KFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V++    IL PTRELA QVA+   K  +  N+T   + GG     Q + L++
Sbjct: 64  RVDGNERHVQVV---ILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++DH +RG +  ++++++V+DEAD ML+MGF+  I  I   +P   QTL
Sbjct: 121 NPQIIVATPGRLMDHMDRGSIKFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +Q+++E +L  P  I +     T + IE           ++   +   L  
Sbjct: 181 LFSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQ---YYIEVQDRQKFDVLCRLFD 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T +  IIF   K+ V  +   L+K+G+    IHG++ Q+ R  ++  F+EGTI ++VA
Sbjct: 238 IQTPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y HR+GRTGRAG+ G+AFT V   +++H+ AIE
Sbjct: 298 TDVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIE 357

Query: 362 KLIEKKV 368
           +L ++K+
Sbjct: 358 RLTKRKI 364


>gi|261415437|ref|YP_003249120.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371893|gb|ACX74638.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 486

 Score =  186 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 163/446 (36%), Positives = 241/446 (54%), Gaps = 4/446 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  +  AV   GY  PTPIQ ++IP +L+  D+ GIAQTGTGKTA+F LP+L
Sbjct: 1   MKFEELPLANPLQRAVRAVGYETPTPIQERSIPSLLEGKDLLGIAQTGTGKTAAFALPIL 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                       +  R LIL PTRELA QV D F +Y +   ++ A + GG+    Q +K
Sbjct: 61  QRLLDSGKFRSPKTCRALILLPTRELAIQVEDCFREYAQFTAISTACIFGGVNDNPQKQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG DVL+ TPGR+LD   +  + +  +E  V+DEADRMLDMGFI  I+ + +++P  R
Sbjct: 121 LIRGVDVLVATPGRLLDLIGQKAISLKKLEFFVLDEADRMLDMGFIHDIRKVVAMLPQDR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L FSATM +E+ K++   L+         P ST        +    +  K   L ++L
Sbjct: 181 QNLFFSATMPEEISKLAATILRPNPVRVEVAPQSTPIERIRQELYRIDKRRKGALL-KEL 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L     MK  ++FC  K     +   LEK G    AIHGN  Q  R + L NFK   I++
Sbjct: 240 LAEHPEMKKVLVFCRTKHGADKIVRVLEKAGIKCAAIHGNKSQNRRQEALGNFKCEQIRV 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ DV HVFN+D+PN  E ++HRIGRT RAG+ G A +  + ++   + 
Sbjct: 300 LVATDIAARGIDVDDVSHVFNYDLPNEHETFVHRIGRTARAGKEGVAISFCSPDEESDLR 359

Query: 359 AIEKLIEKKVDWLNGDL-SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            IEKL   K+   +  +  +L PP ++   +   ++R      +        + N  ++K
Sbjct: 360 GIEKLTRVKIPEGDQSIYENLPPPQKETAESMMRNSRGRMSREEAQARAAETRNNRGNRK 419

Query: 418 SHIPLKESEKISKLQQDIQENDADSL 443
            +   + S       + I  N A ++
Sbjct: 420 GNHGKQNSNNAPHNSEQISRNPAQNV 445


>gi|148543481|ref|YP_001270851.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus
           reuteri DSM 20016]
 gi|184152890|ref|YP_001841231.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112]
 gi|227363631|ref|ZP_03847746.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
           MM2-3]
 gi|227544701|ref|ZP_03974750.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
           CF48-3A]
 gi|300909057|ref|ZP_07126520.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri SD2112]
 gi|325681826|ref|ZP_08161345.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri MM4-1A]
 gi|148530515|gb|ABQ82514.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri DSM
           20016]
 gi|183224234|dbj|BAG24751.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112]
 gi|227071342|gb|EEI09650.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
           MM2-3]
 gi|227185302|gb|EEI65373.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
           CF48-3A]
 gi|300894464|gb|EFK87822.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri SD2112]
 gi|324978917|gb|EGC15865.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri MM4-1A]
          Length = 498

 Score =  186 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 138/368 (37%), Positives = 219/368 (59%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+  +GY + TPIQ +TIP+VL+  DV G AQTGTGKTA+F LP++
Sbjct: 1   MKFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++     I+ PTRELA Q  +   + GK+ ++ V ++ GG     Q K L+
Sbjct: 61  ENVDTENLNIQAI---IISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGR+ DH NR  + +++I+ LV+DEAD ML+MGF+  I++I    P  RQT
Sbjct: 118 QHPQILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++++   F+ +P+ + +     T + ++  ++                  
Sbjct: 178 LLFSATMPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYIRARDYEKFDIMTRL---I 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K+ V  L   L  +G++   IHG++ Q  R KI+  FK   + ++V
Sbjct: 235 DVQDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P+  ++Y+HRIGRTGRAG HG + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEI 354

Query: 361 EKLIEKKV 368
           EKL   ++
Sbjct: 355 EKLTRVRM 362


>gi|284048361|ref|YP_003398700.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
           DSM 20731]
 gi|283952582|gb|ADB47385.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
           DSM 20731]
          Length = 544

 Score =  186 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 158/456 (34%), Positives = 248/456 (54%), Gaps = 14/456 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L  K++ A+ + G+ +P+PIQ   IP+ L+  D+ G AQTGTGKTA+F +P++ 
Sbjct: 20  SFEDLNLDRKILAALKEMGFEEPSPIQKGAIPMALEGEDLIGQAQTGTGKTAAFGIPIIQ 79

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +     + R  + L++ PTREL  QVAD   K GK   + V  + GG P E Q + L+R
Sbjct: 80  KI---NEKDRHIQALVMSPTRELCIQVADEISKIGKTKRIRVLPVYGGQPIERQIRSLKR 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+I TPGR+LDH  RG + +  +  LV+DEAD MLDMGF+  ++NI   VP  RQT+
Sbjct: 137 GIQVVIGTPGRLLDHIRRGTIDLEYVNFLVLDEADEMLDMGFVDDMENIIKNVPPERQTM 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +  +S+ ++           +   E +    +  Y   ++        +  
Sbjct: 197 LFSATMPRPILSISKKYM-----RAPKVVAIHKEVVTAPTIDQYYYETRDKVDGLCRILD 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFC  KK V  L  +L  +G+    +HG++ Q  R +++  F+ G + ++VA
Sbjct: 252 TTDDCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSGQVDILVA 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++ HV NFDVP+ +E+Y+HRIGRTGRAG  G A T +   + + +  IE
Sbjct: 312 TDVAARGLDIDNITHVVNFDVPSDSESYVHRIGRTGRAGNTGVALTFITPREFRQLKLIE 371

Query: 362 KLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK-S 418
           + I+ K+    L  D S L    E+I +++     + +         +  +K+Y  Q  +
Sbjct: 372 RSIKTKIIRGTLPTDASVLERQREQI-VSKMQTILEQDRYQDYLPIVETLEKDYDVQDIA 430

Query: 419 HIPLKESEKISKLQQDI--QENDADSLGFRGNMPAF 452
              LK  ++ +K  ++   +E+  D+L   G  P  
Sbjct: 431 AAALKFMQEGAKALEEPAEEESLPDALANTGAKPGM 466


>gi|110637416|ref|YP_677623.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110280097|gb|ABG58283.1| possible ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 463

 Score =  186 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 149/429 (34%), Positives = 247/429 (57%), Gaps = 8/429 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +L L+ +++ A+ +AGY +PT IQ K IP +L  HD+ G+AQTGTGKTA++ LP+L
Sbjct: 5   LNFEELKLNRQLLNAIEEAGYTEPTEIQSKAIPQILAGHDIIGVAQTGTGKTAAYALPIL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++    +   PR +I  PTREL  Q+    ++  K  +L +  L GGI  + Q + L+
Sbjct: 65  MKIKYA--QGHNPRAVIFGPTRELVMQIEIAMKQLAKYTDLRIVALYGGIGPKLQKEHLQ 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TPGR LD +   ++++  ++ +V+DEAD+M+DMGF+P ++ +  ++P  RQ 
Sbjct: 123 KGVDIIVATPGRFLDLYLEEEIVLKEVKTMVLDEADKMMDMGFMPQLRKMLEVIPRKRQN 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM++ +++++E FL+ P +IEV   ++ A  I           +K   L   + +
Sbjct: 183 LLFSATMSERVERLTEEFLEYPMKIEVTPQATPATLISQKLYKVPNFKTKIHLLEYLIRK 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I    +K         + K   +   IH N DQ SR+  + +FK+GTI+++V
Sbjct: 243 DESVTRAIIFVRTKKSADDIYKFIIRKTTNTCRIIHANKDQNSRINAMDDFKDGTIKILV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ +V HV NFDVP   ++YIHRIGRTGRA   G A T   + ++ HI+ I
Sbjct: 303 ATDVAARGIDVHEVSHVINFDVPIIYDDYIHRIGRTGRANHTGVAITFATEAEMYHIEKI 362

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEK-IDIAQHNHARKNNPIPQKSTGFDRRK---KNYS 414
           EK+I  ++  + L   +       E+  + A+     K    P     F  +K   K  +
Sbjct: 363 EKIIRMQIPVEELPAAVEITETGFEESQEFARELDFYKKKEDPTYKGAFHEKKRDLKGDA 422

Query: 415 SQKSHIPLK 423
            Q ++ P K
Sbjct: 423 KQTAYKPGK 431


>gi|253999447|ref|YP_003051510.1| DEAD/DEAH box helicase domain-containing protein [Methylovorus sp.
           SIP3-4]
 gi|253986126|gb|ACT50983.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. SIP3-4]
          Length = 468

 Score =  186 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 153/410 (37%), Positives = 236/410 (57%), Gaps = 4/410 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F  L L P ++ A+ +AGY  PTPIQ + IP VL  HD+   AQTGTGKTA+F LP +
Sbjct: 3   VTFETLNLHPSILRALEEAGYSTPTPIQAQAIPEVLAGHDLMASAQTGTGKTAAFTLPAL 62

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +   ++ R PR L+L PTRELAAQV D   KYGK        ++GG+P+  QNK L
Sbjct: 63  NLLADIHPSKSRGPRILVLTPTRELAAQVNDAARKYGKFMRARTVSIVGGMPYPLQNKLL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+L+ TPGR+LDH  RG++ M+ +++L++DEADRMLDMGF+P I+ I   +P  RQ
Sbjct: 123 SQPLDILVATPGRLLDHMERGRIDMSRLQMLILDEADRMLDMGFMPDIERINEALPRERQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT    +  +++  L++PK I++         IE           K    L + L
Sbjct: 183 TLMFSATFEGPIANIAKTLLKDPKVIQIAAQKEKHANIEQRLHFVDDMNHK--NKLLEHL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   I+F + K++   L   L   G    A+HG++ Q +R + L+  + G ++++
Sbjct: 241 LIAPDVNQAIVFTSTKRHADLLAEDLYAAGHKSAALHGDMTQGARNRTLTKLRHGDVRVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HV N+D+P  AE+Y+HRIGRTGRAG  G A +  +  D   +  
Sbjct: 301 VATDVAARGIDVQGITHVINYDLPKFAEDYVHRIGRTGRAGNTGVAVSFASHADRHQLRK 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           IE+   ++++    +      P  + D  + ++ R  +  P   +GF  R
Sbjct: 361 IEQYTGQRIEITVIEGFEPKRPAPRSDD-RGSNGRPRSGNPGSKSGFKPR 409


>gi|294673582|ref|YP_003574198.1| DEAD/DEAH box helicase [Prevotella ruminicola 23]
 gi|294472821|gb|ADE82210.1| ATP-dependent helicase, DEAD/DEAH box family [Prevotella ruminicola
           23]
          Length = 446

 Score =  186 bits (470), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 135/408 (33%), Positives = 222/408 (54%), Gaps = 16/408 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L+  ++ A+ D  +   TPIQ + IP +L  +DV G+AQTGTGKTA+++LP+L
Sbjct: 1   MKFEETYLNDNILDALYDMHFEDMTPIQEQCIPEILDGYDVLGVAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP----FEAQN 116
           + L+ G         +I+ PTRELA Q+    + +G   +   ++ + G      ++ + 
Sbjct: 61  SELDDGDYPKDAINAVIMSPTRELAQQIDQAMQGFGYYLDDVSSVAVYGGNDGNRYDQEL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + +  GADVLI TPGR+L H   G L ++     V+DEADRMLDMGFI  I  I   +P 
Sbjct: 121 RSMRMGADVLIATPGRLLSHLKVGNLDLSRCSFFVLDEADRMLDMGFIEDIMKIVKELPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + Q ++FSATM  ++++++   L NP  I++       +  +  +V    Q  K      
Sbjct: 181 SCQRIMFSATMPKKIRELAVQLLHNPVEIQIAVSKPAEKIHQMAYVCYEPQKLKII---- 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q +  +  ++  IIF  +K+ V  +   L+    +   +H ++ Q  R + +  FK G  
Sbjct: 237 QDIFKKGDLQRVIIFSGKKERVKEVTRKLKSMHINCDQMHSDLSQAERDEAMYRFKAGQT 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA R G+A T V+ +D+  
Sbjct: 297 DVLVATDIVARGIDIDDIRLVINYDVPSDSEDYVHRIGRTARADRDGEAITFVSDDDMYR 356

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
             +IE  + K+V+ L        P  E +  A     R+  P  +++ 
Sbjct: 357 FQSIEHFLGKEVEKL--------PLPEGLGEAPEYKKREKKPTSRRNG 396


>gi|53712950|ref|YP_098942.1| ATP-dependent RNA helicase DeaD [Bacteroides fragilis YCH46]
 gi|60681162|ref|YP_211306.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|253563072|ref|ZP_04840529.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_2_5]
 gi|265763047|ref|ZP_06091615.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_16]
 gi|52215815|dbj|BAD48408.1| ATP-dependent RNA helicase DeaD [Bacteroides fragilis YCH46]
 gi|60492596|emb|CAH07368.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|251946848|gb|EES87130.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_2_5]
 gi|263255655|gb|EEZ27001.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_16]
          Length = 427

 Score =  186 bits (470), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 160/431 (37%), Positives = 245/431 (56%), Gaps = 9/431 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY  PTPIQ ++IP++LQ  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MTFENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K   R    + L+L PTRELA Q+ ++FE YG+   L  A++ GG+  + Q   L 
Sbjct: 61  QKLYKTDHRKG-IKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALR 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +L+ TPGR+LD  ++G + +++++  V+DEADRMLDMGFI  I+ I  L+P  RQT
Sbjct: 120 SGIQILVATPGRLLDLISQGFISLSSLDFFVLDEADRMLDMGFIHDIKRILKLLPARRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++ ++ + L  P+++EV   SST + I         +  K   +      
Sbjct: 180 LFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKEKKDLLIHLL--- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++++ +IF   K     L   L K G    AIHGN  Q +R + L+NFK  T++ ++
Sbjct: 237 KDTSIESVLIFTRTKYGADKLARVLTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+++PN  E Y+HRIGRTGRAG  G A +    E++ ++  I
Sbjct: 297 ATDIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLKDI 356

Query: 361 EKLIEKKVDWLNGDL----SSLNPPLEKI-DIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           +KLI K +  +          +    EK  +I     A K     + +  F RRKK  ++
Sbjct: 357 QKLIGKNIPVVKDHPFVTTEGIKAQEEKQEEIKVKAKANKTYRGSRANGDFWRRKKQKTN 416

Query: 416 QKSHIPLKESE 426
           Q S    ++ +
Sbjct: 417 QPSSTKQEKRK 427


>gi|254498821|ref|ZP_05111531.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
 gi|254351952|gb|EET10777.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
          Length = 418

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 155/422 (36%), Positives = 249/422 (59%), Gaps = 6/422 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   ++ AV ++GY +P+PIQ ++IP +L+ +D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFTSLGLIEPLLRAVSESGYNEPSPIQAQSIPTILRGNDLLASAQTGTGKTASFVLPIL 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                + RA+    + LIL PTRELAAQV ++  +YGK+ +L  A++ GG+    Q  KL
Sbjct: 61  QRLHNQPRAKSNHTKVLILTPTRELAAQVHESIRQYGKHLSLRSAVVFGGVKISPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G ++L+ TPGR++D + +  +  +++  LV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RGGVEILVATPGRLMDLYQQRAIQFSDVNTLVLDEADRMLDMGFIHDIKRIINLLPKERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT ++ ++ +++  L  P  I+V   ++TA          +     +   L   L
Sbjct: 181 NLLFSATFSEAIRTLAKGLLNKPVEIDVAPRNTTA---IAVKQTVHPVDKNRKHALLSHL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++     ++F   K     L   L ++     AIHGN  Q  R K+L++FK G + ++
Sbjct: 238 IHKNKWGQTLVFSKTKHGANKLVQQLAEEHIYAAAIHGNKSQSQRTKVLADFKSGELHIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAG  G A +LV  +++  + A
Sbjct: 298 VATDIAARGIDIDQLPCVVNYDLPQVAEDYVHRIGRTGRAGASGSAISLVCADEVGQLQA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IEKLI++K++ +  ++    P       A     +++ P  +K +   ++  N   +++ 
Sbjct: 358 IEKLIKRKLERI--EIEDFEPHHRLPSSALPTQVKRSAPRSRKPSVDAKKMGNKPFKRTT 415

Query: 420 IP 421
           + 
Sbjct: 416 VK 417


>gi|315452663|ref|YP_004072933.1| ATP-dependent RNA helicase [Helicobacter felis ATCC 49179]
 gi|315131715|emb|CBY82343.1| ATP-dependent RNA helicase,DEAD box helicase family protein
           [Helicobacter felis ATCC 49179]
          Length = 469

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 145/388 (37%), Positives = 221/388 (56%), Gaps = 10/388 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL P+++ ++ +AG+V+P+PIQ K IP++LQ  DV   AQTGTGKTA+F LP++  
Sbjct: 20  FKDLGLHPRILKSIAEAGFVQPSPIQEKAIPVILQGRDVIAQAQTGTGKTAAFALPIIHN 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+      R    LI+ PTRELA Q++D   + GK+       + GG     Q + LE+ 
Sbjct: 80  LKND----RSVEALIITPTRELAMQISDEIFRLGKSSRTRTICIYGGQSIRKQCELLEKR 135

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    +L   N +++V+DE+D MLDMGF+  I+ I   +P   Q LL
Sbjct: 136 PQVMIATPGRLLDHLKNKRLKHFNPKVVVLDESDEMLDMGFLDDIEEIFDYLPNDAQILL 195

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   ++ ++   LQ+P  I +   + T   I   F         +  +     ++ 
Sbjct: 196 FSATMPPPIRDLANKILQDPASIHIAPANITNADISQRFYVINEHERNEAIMRLLDKENH 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   K+ V  L   L ++G+    +HG+++QR+R + +  FK     ++VA+
Sbjct: 256 ---TKSIIFMRMKREVDELHRFLVERGYKTTPLHGDMEQRARQESIKAFKSKRADVLVAT 312

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI DV HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++K
Sbjct: 313 DVASRGLDISDVSHVFNYHLPLNTESYIHRIGRTGRAGKKGIAITLVTPLEYKELQRMQK 372

Query: 363 LIEKKVDWLN---GDLSSLNPPLEKIDI 387
            I+  ++       +   L   L K+++
Sbjct: 373 EIDSTIELYEIPDMNEDRLVRSLSKVEV 400


>gi|332521345|ref|ZP_08397801.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332043073|gb|EGI79271.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 444

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 171/415 (41%), Positives = 241/415 (58%), Gaps = 8/415 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+   GY  P+PIQ K IP VL  +DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFKQLGLSEPLLKAISKKGYENPSPIQAKAIPPVLDGYDVLASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            IL +       P    +L PTRELAAQV  N ++Y +  NL   ++ GG+  + Q   +
Sbjct: 61  HILSENPKEKFRPIRALVLTPTRELAAQVYANVKEYSEFLNLRSVVIFGGVNQKPQVANI 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DVL+ TPGR++D  N+G L +  +EI V+DEADRMLDMGF+  I+ +  L+P  RQ
Sbjct: 121 RKGVDVLVATPGRLIDLNNQGLLSLKRVEIFVLDEADRMLDMGFLRDIERVMKLMPDKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT + +++K++ N L+NP ++E    ++  E I                +     
Sbjct: 181 NLMFSATFSKDIKKLAFNILKNPVQVEATPENTAVEAISQKVYRVAKGLKTGLVIKL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S    K  ++F   K     L   +   G +  AIHGN  Q +R K L  FK+GTI++M
Sbjct: 238 ISDGNWKQVLVFTRTKHGANKLTKKMISSGITAAAIHGNKSQGARTKALKGFKDGTIRVM 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + HV NF++PN +E+Y+HRIGRTGRAG  G+A +LV+ ++ +++  
Sbjct: 298 VATDIAARGLDIPLLPHVINFEIPNISEDYVHRIGRTGRAGAKGEAISLVSADETQYLRD 357

Query: 360 IEKLIEK--KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           IEKLI +  KV+ L G     N     I   Q+   R  NP   KS G +  K+N
Sbjct: 358 IEKLIGEKLKVEILEGFEPDPNASTAPIKPGQNRQKR--NPNKAKSQGSNSGKRN 410


>gi|223939310|ref|ZP_03631190.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
 gi|223892023|gb|EEF58504.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
          Length = 412

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 167/374 (44%), Positives = 231/374 (61%), Gaps = 6/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  +V  V   GYV+PTPIQ++ IPL+L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MAFSNLGLSQTMVDGVKAMGYVEPTPIQLRAIPLILSGQDVIGSAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + LE  + R   PR LILEPTRELAAQV      + +  NL  A+L GG+ +  Q   L+
Sbjct: 61  SKLESHQPR---PRLLILEPTRELAAQVETAIRDFARFTNLRAAVLYGGVGYGRQMDALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D++I TPGR+LDH  RG    + I+ LV+DEADRMLDMGF+P ++ I    P  R T
Sbjct: 118 AGVDIIIATPGRLLDHLERGTCKFDQIKYLVLDEADRMLDMGFLPDVRRIVDKCPRDRHT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT+  +++ + +  ++NP+ IE+    S AET+       Y     + + L + L 
Sbjct: 178 SLFSATVPPQIETLIKWAMKNPQTIEIGARRSPAETV---KHVIYPVAEDQKSDLLRELL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + I+FC  K     +   L++   +V  +H N  QR R   L  F+ G  +++V
Sbjct: 235 ERVNYDSVIVFCRTKHRADRIAILLKRNNHAVAVLHSNRTQREREDALKGFRNGRFEVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI DV HV N+DVP   E+YIHRIGRTGRA   G AFTL+  ED +H+ +I
Sbjct: 295 ATDIAARGLDIADVSHVINYDVPQHPEDYIHRIGRTGRAAATGDAFTLMVAEDSQHVQSI 354

Query: 361 EKLIEKKVDWLNGD 374
           E+ I KKV+ +  +
Sbjct: 355 ERFIGKKVERIKLE 368


>gi|302345341|ref|YP_003813694.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           melaninogenica ATCC 25845]
 gi|302149991|gb|ADK96253.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           melaninogenica ATCC 25845]
          Length = 573

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 150/478 (31%), Positives = 245/478 (51%), Gaps = 18/478 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L+  V+ A+ D  + + TP+Q K IP +L+ HDV G+AQTGTGKTA+++LP+L
Sbjct: 1   MYFEDLDLNDNVLDALYDMRFDECTPVQEKCIPEILKGHDVLGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP----FEAQN 116
           + L  G         +I+ PTRELA Q+    + +    +    + + G      ++ + 
Sbjct: 61  SKLADGGYPESAINCVIMSPTRELAQQIDQGMQGFAYYLDGVSCVAVYGGNDGNRYDQEL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  GADV+I TPGR + H + G + ++ +   ++DEADRMLDMGF   I  I   +P 
Sbjct: 121 KSLALGADVVIATPGRFISHISLGNVDLSKVSFFILDEADRMLDMGFADDIMTIAKKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T QT++FSATM  +++++++  L+NP  I++       +         Y  Y  +   + 
Sbjct: 181 TCQTIMFSATMPAKIEELAKTLLKNPVEIKLAVSKPAEKI----QQTAYVCYETQKMGII 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + +     +K  IIF   K+ V  +  SL +   +   +H ++DQ  R  ++  FK G I
Sbjct: 237 KDIFKAGDLKRVIIFSGSKQKVKQIAGSLNRMHINCGEMHSDLDQEQRNDVMFKFKSGQI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ +RG+DI D+  V N+DVP+ AE+Y+HRIGRT RA R GKA T V ++DI  
Sbjct: 297 DVLVATDIVSRGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGKAITFVNEDDIYF 356

Query: 357 IDAIEKLIEKKVDW--LNGDLSSLNPPLEK-IDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
              IE  +EK+V+   L  +L                N A+      +       +K+  
Sbjct: 357 FQQIESFLEKEVEKAQLPAELGEGPEYKSNGKPKKAGNSAKSRRRKDRDHQSHKDKKQGN 416

Query: 414 SSQKSHIPL-------KESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
           + Q++  P         E+    + ++   + +      + N PA    K   K N++
Sbjct: 417 NKQRNRRPAPQTQNNTDENNANQQERKAGNKQNHRPQKQQDNNPAATEGKPVNKKNNR 474


>gi|39936732|ref|NP_949008.1| putative ATP-dependent RNA helicase [Rhodopseudomonas palustris
           CGA009]
 gi|192292558|ref|YP_001993163.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
 gi|39650588|emb|CAE29111.1| putative ATP-dependent RNA helicase [Rhodopseudomonas palustris
           CGA009]
 gi|192286307|gb|ACF02688.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 474

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 173/464 (37%), Positives = 249/464 (53%), Gaps = 18/464 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + GL+  +  A+ +  Y  PTPIQ +TIPL L   DV GIAQTGTGKTASF LP+L 
Sbjct: 10  SFQEFGLADPIARALQEENYHTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILH 69

Query: 62  ILEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L + R +       +L   PTREL+ Q+ D+F  YG++ +L+ AL IGG+P   Q + L
Sbjct: 70  RLLQNRIKPASKTCRVLVLSPTRELSGQILDSFNAYGRHVHLSAALAIGGVPMGRQVRSL 129

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR+LD      L +  +E LV+DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 130 MGGVDVLVATPGRLLDLVQGNALKLTQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQ 189

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM  ++  ++E  L++P R+ V   SST E I    +                +
Sbjct: 190 TLFFSATMPKDIADLAEQMLRDPARVAVTPVSSTVERINQRVIQLDHSAK---PAALAQI 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D +   ++F   K     +   L + G +  AIHGN  Q  R ++L+ F+ G ++ +
Sbjct: 247 LKDDKVNQALVFTRTKHGADKVVKGLARAGITADAIHGNKSQNYRERVLAAFRTGELRTL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV NFD+PN  E Y+HRIGRT RAG  G A +L A E++ ++  
Sbjct: 307 VATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGADGTAISLCAGEEMAYLRD 366

Query: 360 IEKLIEKKVDWLN-----GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           IEKLI+  +   +        +   PP      A H H+ +N   P +     RR     
Sbjct: 367 IEKLIKVSLPKEDRRTPGAHAAPTPPPHRGPRQAPHGHSPRNGDAPTRGKNHRRRG---- 422

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
              +  P ++S+          ++  +  G +G   AF+  KNR
Sbjct: 423 --PAAGPARQSDASRHEAAPRPQHGGNGEGLQG--VAFLQRKNR 462


>gi|227528896|ref|ZP_03958945.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
           ATCC 49540]
 gi|227351170|gb|EEJ41461.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
           ATCC 49540]
          Length = 501

 Score =  185 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 140/368 (38%), Positives = 218/368 (59%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+  +GY + TPIQ +TIP+VL+  DV G AQTGTGKTA+F LP++
Sbjct: 1   MKFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++     I+ PTRELA Q  +   + GK+ ++ V ++ GG     Q + L+
Sbjct: 61  EHVDTDNPNIQAI---IISPTRELAIQTQEELFRLGKDKHVRVQVVYGGADIRRQIRNLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGR+ DH NR  + +++I+ LV+DEAD ML+MGF+  I+ I    P  RQT
Sbjct: 118 QHPQILVGTPGRLRDHLNRHTVKLDHIKTLVLDEADEMLNMGFLDDIEAIIDQTPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++K+   F+ +P  + +     T + ++  +V                  
Sbjct: 178 LLFSATMPPEIKKIGVKFMTDPTMVRIKAKELTTDLVDQYYVKARDYEKFDIMTRL---I 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K+ V  L   L  +G++   IHG++ Q  R KI+  FK G + ++V
Sbjct: 235 DVQDPDLTIVFGRTKRRVDELSRGLVARGYNAAGIHGDLSQDRRTKIMKKFKHGELDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P+  ++Y+HRIGRTGRAG HG + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLREI 354

Query: 361 EKLIEKKV 368
           EKL   ++
Sbjct: 355 EKLTRVRM 362


>gi|300088260|ref|YP_003758782.1| DEAD/DEAH box helicase domain-containing protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527993|gb|ADJ26461.1| DEAD/DEAH box helicase domain protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 429

 Score =  185 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 155/402 (38%), Positives = 230/402 (57%), Gaps = 6/402 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L P V   V  AGY +PTPIQ + IP  LQ  D+ G+AQTGTGKT +FVLPML
Sbjct: 1   MTFENFDLHPAVRDGVKSAGYTEPTPIQAQAIPPALQGRDLIGLAQTGTGKTTAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +G          I+ PTRELA Q+ D+ +   ++  L    + GG+  E Q  KL 
Sbjct: 61  QRLLRGPRGKLRGL--IVSPTRELAEQIYDSVKTLSQHTGLRAMAIYGGVGMEPQKAKLR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D++I  PGR+LDH  +G +  +++E+LVIDEADRM DMGF+P I+ I   +    + 
Sbjct: 119 AGTDIVIACPGRLLDHVWQGTIDFDDVEMLVIDEADRMFDMGFLPDIRKILRCLVRPERQ 178

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSATM  +++K+ + FL +P  +++ T +     +         +   K ALL+Q+L
Sbjct: 179 TLLFSATMPADVRKLVQEFLTDPVTVQIGTVA---PAVTVTHALYPVRQDLKTALLKQIL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +   + ++F   K     +  +L + G++V +I GN+ Q  R   L  FK+GT +++
Sbjct: 236 RQIEDAGSVLVFTRTKHRTERVAIALRQAGYAVASIQGNLSQYRRQAALDGFKDGTFKVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RG+D+ DV HV N+D+P+ A+ YIHRIGRTGR GR G AFT V  ED   + A
Sbjct: 296 VATDIASRGIDVSDVSHVINYDMPDTADAYIHRIGRTGRIGRSGDAFTFVTPEDESMVRA 355

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           +EKL++  ++    +    N P            R N P P+
Sbjct: 356 LEKLLKTTIERRTVEGFDYNAPEPPPSRFSGAPGRGNRPAPK 397


>gi|157376983|ref|YP_001475583.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157319357|gb|ABV38455.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 513

 Score =  185 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 177/459 (38%), Positives = 263/459 (57%), Gaps = 12/459 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV   GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 23  MSFTSLGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 82

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +G   + +  R L+L PTRELAAQVA++ E YGKN  L  A++ GG+    Q  KL
Sbjct: 83  ELLTRGNRAQAKQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVVFGGVGIGPQISKL 142

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD FN+  L  N +E+L++DEADRMLDMGFI  I+ I  ++P  RQ
Sbjct: 143 GKGVDILVATPGRLLDLFNQRALNFNQLEVLILDEADRMLDMGFIHDIKKILKVLPAKRQ 202

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +D+++K+++  + NP  I V   ++TA+T+E           K+       L
Sbjct: 203 NLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATAKTVEQYIYQVDQ---KQKTAALIHL 259

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  K  ++F   K     +  +LE    +  AIHGN  Q +R K L+NFK G ++++
Sbjct: 260 IKQNDWKQVLVFSRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKALANFKSGEVRVL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + +V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ ++ K +  
Sbjct: 320 VATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGADGQAVSLVSGDESKLLRD 379

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR--------KK 411
           IE+LI++K+     +       + + D+ +  H +   P      G  R          +
Sbjct: 380 IERLIKQKIPRKEVEGFVPTQVVAETDLNERKHGQNRGPRNANGRGNGRSNSGSRNNDSR 439

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMP 450
             +S+ S      SE     + + ++        RG+ P
Sbjct: 440 GNASRGSSRNDSRSESSQGGRVEHKDGQRSGDSARGHKP 478


>gi|327313656|ref|YP_004329093.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
 gi|326944744|gb|AEA20629.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
          Length = 572

 Score =  185 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 145/446 (32%), Positives = 242/446 (54%), Gaps = 19/446 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L+  V+ A+ D  + + TP+Q K IP +L+ +DV G+AQTGTGKTA+++LP+L
Sbjct: 1   MYFEDLDLNDNVLDALYDMRFDECTPVQEKCIPEILKGNDVLGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP----FEAQN 116
           + L  G         +I+ PTRELA Q+    + +    +    + + G      ++ + 
Sbjct: 61  SKLADGGYPESAINCVIMSPTRELAQQIDQAMQGFAYYLDGVSCVAVYGGNDGNRYDQEL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  GADV+I TPGR + H + G + ++ +   ++DEADRMLDMGF   I  I   +P 
Sbjct: 121 KSLSLGADVVIATPGRFISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + QT++FSATM  +++++++  L+NP  I++       +  +      Y  Y  +   + 
Sbjct: 181 SCQTIMFSATMPKKIEELAKTLLKNPVEIKLAVSKPAEKIHQM----AYVCYETQKMGII 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + +     +K  IIF   K+ V  +  SL ++  +   +H ++DQ  R  ++  FK G I
Sbjct: 237 KDIFKAGDLKRVIIFSGSKQKVKQIAASLGRKHINCGEMHSDLDQEQRNDVMFKFKSGQI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ ARG+DI D+  V N+DVP+ AE+Y+HRIGRT RA R GKA T V  +DI +
Sbjct: 297 DVLVATDIVARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGKAITFVNVDDIYY 356

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              IE  ++K+V+ +        P  E++         K N  P++      R++    Q
Sbjct: 357 FKQIESFLDKEVEKI--------PLPEELG---EGPEYKGNGKPKRGGNAKTRRRKDRDQ 405

Query: 417 KSHIPLKESEKISKLQQDIQENDADS 442
           +SH   K+     + ++   +N + +
Sbjct: 406 QSHKDKKQGGNRQRNRRPAVQNQSTA 431


>gi|325860554|ref|ZP_08173658.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
 gi|325481939|gb|EGC84968.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
          Length = 572

 Score =  185 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 145/446 (32%), Positives = 242/446 (54%), Gaps = 19/446 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L+  V+ A+ D  + + TP+Q K IP +L+ +DV G+AQTGTGKTA+++LP+L
Sbjct: 1   MYFEDLDLNDNVLDALYDMRFDECTPVQEKCIPEILKGNDVLGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP----FEAQN 116
           + L  G         +I+ PTRELA Q+    + +    +    + + G      ++ + 
Sbjct: 61  SKLADGGYPESAINCVIMSPTRELAQQIDQAMQGFAYYLDGVSCVAVYGGNDGNRYDQEL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  GADV+I TPGR + H + G + ++ +   ++DEADRMLDMGF   I  I   +P 
Sbjct: 121 KSLSLGADVVIATPGRFISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + QT++FSATM  +++++++  L+NP  I++       +  +      Y  Y  +   + 
Sbjct: 181 SCQTIMFSATMPKKIEELAKTLLKNPVEIKLAVSKPAEKIHQM----AYVCYETQKMGII 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + +     +K  IIF   K+ V  +  SL ++  +   +H ++DQ  R  ++  FK G I
Sbjct: 237 KDIFKAGDLKRVIIFSGSKQKVKQIAASLGRKHINCGEMHSDLDQEQRNDVMFKFKSGQI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ ARG+DI D+  V N+DVP+ AE+Y+HRIGRT RA R GKA T V  +DI +
Sbjct: 297 DVLVATDIVARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGKAITFVNVDDIYY 356

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              IE  ++K+V+ +        P  E++         K N  P++      R++    Q
Sbjct: 357 FKQIESFLDKEVEKI--------PLPEELG---EGPEYKGNGKPKRGGNAKTRRRKDRDQ 405

Query: 417 KSHIPLKESEKISKLQQDIQENDADS 442
           +SH   K+     + ++   +N + +
Sbjct: 406 QSHKDKKQGGNRQRNRRPAVQNQSTA 431


>gi|297584103|ref|YP_003699883.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           selenitireducens MLS10]
 gi|297142560|gb|ADH99317.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
           MLS10]
          Length = 528

 Score =  185 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 152/384 (39%), Positives = 231/384 (60%), Gaps = 9/384 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  +S  ++ A+ + G+  P+PIQ K IP +L+ +D+ G AQTGTGKTA+F +P+L
Sbjct: 2   MTFEEFNISKSLMRAIKEMGFEAPSPIQEKVIPTILEGNDLIGQAQTGTGKTAAFGIPIL 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    R +  + +IL PTRELA QVA   +K  K   +    + GG     Q K+L+
Sbjct: 62  EKLK----RTKNVQAIILTPTRELAIQVAGEIQKLSKFQKVQTLPVYGGQSIGQQIKQLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+++ TPGR+LDH NR  L ++ I   V+DEAD MLDMGFI  I+ I  +    RQT
Sbjct: 118 RGVDIVVGTPGRVLDHVNRKTLDLSKIHTFVLDEADEMLDMGFIEDIEKIIQVSSEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+S  ++ +P+++ ++    TA +I       Y    K        L 
Sbjct: 178 LLFSATMPPPIRKLSNKYMNSPEQVTISKSEVTAPSI---NQVYYKVLEKNKLDSLCRLI 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +    GIIFC  KK V  L  +L+ +G+    +HG++ Q  R  ++  F++ +I  ++
Sbjct: 235 DSENTDLGIIFCRTKKGVSELAEALQARGYRADGLHGDLTQSQRDSVMKKFRDSSIDFLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ +V HV N+D+P   E+Y+HRIGRTGRAGR G A TLV   ++KH+ +I
Sbjct: 295 ATDVAARGIDVQNVTHVVNYDIPQDPESYVHRIGRTGRAGREGIALTLVTPREMKHLRSI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E  I+ K+   + +L S+   +EK
Sbjct: 355 ENEIKMKIP--SQNLPSVEEVIEK 376


>gi|26991657|ref|NP_747082.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440]
 gi|24986754|gb|AAN70546.1|AE016697_1 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
           KT2440]
          Length = 626

 Score =  185 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 174/456 (38%), Positives = 262/456 (57%), Gaps = 15/456 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+ 
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 60  ------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                     +  R   R PR L+L PTRELAAQV D+F+ Y ++  L  A + GG+   
Sbjct: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + +G DVL+  PGR+LD   +GK+ + ++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  +++  L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRAL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   LEKQG +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            +++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 NSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            K + +IE++ ++++   D +  D S +    EK +  +           Q++ G   + 
Sbjct: 358 EKLLKSIERVTKQRIADGDLMGFDASQVEA--EKPEARERPQNNGRGGRNQQARGEGGKD 415

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFR 446
            N   +       ++ + +  + D +E   D    R
Sbjct: 416 TNGGRKDKGKDKGKARQQAAAKPDDKEKSGDKQQPR 451


>gi|56477991|ref|YP_159580.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
 gi|56314034|emb|CAI08679.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
          Length = 491

 Score =  185 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 167/439 (38%), Positives = 248/439 (56%), Gaps = 11/439 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGL P+++ AV ++GY  PTPIQ + IP+VL   DV G AQTGTGKTA F LP+L
Sbjct: 1   MSFADLGLIPELLRAVAESGYTTPTPIQQQAIPVVLSGRDVMGGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L +  +    P        IL PTRELA QV ++ + Y K   L    + GG+  + Q
Sbjct: 61  QRLARHASTSTSPARHPVRALILAPTRELAMQVFESVKTYSKYVPLRSTCIYGGVDMKPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L  G ++++ TPGR+LDH  +  + +  +E+LV+DEADRMLDMGFIP I+ I  L+P
Sbjct: 121 IQDLRNGIEIVVATPGRLLDHVQQKTIQLGQVEMLVLDEADRMLDMGFIPDIRRILDLLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ+LLFSAT +DE++K+++  L+ P+ IEV   +  +ETI H      A   +     
Sbjct: 181 AARQSLLFSATFSDEIKKLADQMLKEPQLIEVARRNMVSETITHRVHPVSAGLKRNLLAH 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                  +     ++F   K     L H LE+ G +  AIHG+  Q  R   L  FK G 
Sbjct: 241 LL---RHEPDTQALVFVATKLACSRLAHFLERHGIAADAIHGDKGQAQRTDTLEAFKSGK 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGLDI D+  V NF++P+ AE+Y+HRIGRTGRAGR G A +LV+ E+  
Sbjct: 298 LRVLVATDVAARGLDIDDLPSVINFELPHTAEDYVHRIGRTGRAGRQGNAVSLVSAEERH 357

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI-AQHNHARKNNPIPQKSTGFDRRKKNYS 414
           H+  IEKLI+ ++      +   +P  +  +  ++  H R+           +  +K   
Sbjct: 358 HLAEIEKLIKLQIP--QEIVPGFDPEPDFFETGSRSRHGRRTAAASAPEPAKETGQKTTP 415

Query: 415 SQKSHIPLKESEKISKLQQ 433
           + +   P   +      ++
Sbjct: 416 ASRPARPASAARSGEARRR 434


>gi|303231880|ref|ZP_07318591.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513487|gb|EFL55518.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 523

 Score =  185 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 142/367 (38%), Positives = 223/367 (60%), Gaps = 6/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L +S  V+ A+ D G+ +PTPIQ + IP+ +   D+ G AQTGTGKTA+F LP+L 
Sbjct: 4   KFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V++    IL PTRELA QVA+   K  +  ++T   + GG     Q + L++
Sbjct: 64  RVDGSNRHVQVV---ILSPTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQFRALKK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++DH +RG +   +++I+V+DEAD ML+MGF+  I  I   +P   QTL
Sbjct: 121 NPQIIVATPGRLMDHMDRGSIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPEDHQTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +++++E +L  P  I +     T + IE           ++   +   L  
Sbjct: 181 LFSATMPKTIRELAETYLTEPTLIRMKPTQVTMDLIEQ---YYIEVQDRQKFDVLCRLFD 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  IIF   K+ V  +  +L+K+G+    IHG++ Q+ R  ++  F+EGTI ++VA
Sbjct: 238 LQAPELAIIFTRTKRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y HR+GRTGRAG+ G+A+T V   +I+H+ AIE
Sbjct: 298 TDVAARGLDISGVSHVYNYDLPQDPESYTHRVGRTGRAGKAGEAYTFVIPREIEHLHAIE 357

Query: 362 KLIEKKV 368
           +L ++K+
Sbjct: 358 RLTKRKI 364


>gi|302063416|ref|ZP_07254957.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato K40]
          Length = 629

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 176/478 (36%), Positives = 268/478 (56%), Gaps = 20/478 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L          R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPP----LEKIDIAQHNHARKNNPIPQKSTGF 406
            K + +IE++ ++K+   D +  D++++        E+ D+     AR       K+ G 
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARADGDKNNG- 416

Query: 407 DRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
             R+     +    P   +    +  +  +E      G   +    + P    + +D+
Sbjct: 417 -GRRDKGKDKGKEKPAAAAATGERPARPPREKKPRE-GTPRSEQRAVQPSTPRQASDR 472


>gi|69248308|ref|ZP_00604710.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Enterococcus faecium DO]
 gi|257878842|ref|ZP_05658495.1| helicase [Enterococcus faecium 1,230,933]
 gi|257881478|ref|ZP_05661131.1| helicase [Enterococcus faecium 1,231,502]
 gi|257890700|ref|ZP_05670353.1| helicase [Enterococcus faecium 1,231,410]
 gi|258615088|ref|ZP_05712858.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecium DO]
 gi|293560261|ref|ZP_06676758.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
 gi|294621795|ref|ZP_06700954.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
 gi|314938932|ref|ZP_07846197.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
 gi|314943517|ref|ZP_07850284.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
 gi|314948188|ref|ZP_07851582.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
 gi|314951548|ref|ZP_07854594.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
 gi|314991589|ref|ZP_07857065.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
 gi|314994922|ref|ZP_07860049.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
 gi|68194452|gb|EAN08953.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Enterococcus faecium DO]
 gi|257813070|gb|EEV41828.1| helicase [Enterococcus faecium 1,230,933]
 gi|257817136|gb|EEV44464.1| helicase [Enterococcus faecium 1,231,502]
 gi|257827060|gb|EEV53686.1| helicase [Enterococcus faecium 1,231,410]
 gi|291598627|gb|EFF29685.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
 gi|291605711|gb|EFF35148.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
 gi|313590904|gb|EFR69749.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
 gi|313593873|gb|EFR72718.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
 gi|313596242|gb|EFR75087.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
 gi|313597889|gb|EFR76734.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
 gi|313641641|gb|EFS06221.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
 gi|313645321|gb|EFS09901.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
          Length = 503

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 152/384 (39%), Positives = 228/384 (59%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LSP+++ +V  AG+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKELELSPELLKSVERAGFEEATPIQAETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R  ++    L++ PTRELA Q  +   + G++  + V  + GG     Q + L+
Sbjct: 61  EKIDPDRHELQ---GLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  ++ LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F++NP  +++     TA+ I+  +V                  
Sbjct: 178 LLFSATMPPAIKNIGVKFMKNPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRL---F 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       +++L PP EK
Sbjct: 355 ENLTKKR-------MTTLRPPTEK 371


>gi|148550055|ref|YP_001270157.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida F1]
 gi|148514113|gb|ABQ80973.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 627

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 173/453 (38%), Positives = 261/453 (57%), Gaps = 15/453 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+ 
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 60  ------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                     +  R   R PR L+L PTRELAAQV D+F+ Y ++  L  A + GG+   
Sbjct: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + +G DVL+  PGR+LD   +GK+ + ++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  +++  L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRAL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   LEKQG +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            +++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 NSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            K + +IE++ ++++   D +  D S +    EK +  +           Q++ G   + 
Sbjct: 358 EKLLKSIERVTKQRIADGDLMGFDASQVEA--EKPETRERPQNNGRGGRNQQARGEGAKD 415

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQENDADSL 443
            N   +       ++ + +  + D +E   D  
Sbjct: 416 SNGGRKDKGKDKGKARQQAAAKPDDKEKSGDKQ 448


>gi|289647882|ref|ZP_06479225.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 625

 Score =  185 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 176/477 (36%), Positives = 269/477 (56%), Gaps = 21/477 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L          R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQH---NHARKNNPIPQKSTGFD 407
            K + +IE++ ++K+   D +  D++++    EK ++ +     ++R   P   K+ G  
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDITAVEA--EKPEVRERPDVRNSRGARPAGDKNNG-- 413

Query: 408 RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            R+     +    P   +    +  +  +E      G   +    + P       D+
Sbjct: 414 GRRDKGKDKGKEKPAAAAATGERPARQPREKKPRE-GTPRSEQRALQPSIPRPAADR 469


>gi|303228490|ref|ZP_07315321.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516848|gb|EFL58759.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 523

 Score =  185 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 142/367 (38%), Positives = 223/367 (60%), Gaps = 6/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L +S  V+ A+ D G+ +PTPIQ + IP+ +   D+ G AQTGTGKTA+F LP+L 
Sbjct: 4   KFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V++    IL PTRELA QVA+   K  +  ++T   + GG     Q + L++
Sbjct: 64  RVDGSNRHVQVV---ILSPTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQFRALKK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++DH +RG +   +++I+V+DEAD ML+MGF+  I  I   +P   QTL
Sbjct: 121 NPQIIVATPGRLMDHMDRGSIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPEDHQTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +++++E +L  P  I +     T + IE           ++   +   L  
Sbjct: 181 LFSATMPKAIRELAETYLTEPTLIRMKPTQVTMDLIEQ---YYIEVQDRQKFDVLCRLFD 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  IIF   K+ V  +  +L+K+G+    IHG++ Q+ R  ++  F+EGTI ++VA
Sbjct: 238 LQAPELAIIFTRTKRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y HR+GRTGRAG+ G+A+T V   +I+H+ AIE
Sbjct: 298 TDVAARGLDISGVSHVYNYDLPQDPESYTHRVGRTGRAGKAGEAYTFVIPREIEHLHAIE 357

Query: 362 KLIEKKV 368
           +L ++K+
Sbjct: 358 RLTKRKI 364


>gi|304385542|ref|ZP_07367886.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus
           acidilactici DSM 20284]
 gi|304328046|gb|EFL95268.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus
           acidilactici DSM 20284]
          Length = 511

 Score =  185 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 150/384 (39%), Positives = 228/384 (59%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ AVLD GY +PTPIQ +TIP VL   D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MKFTELGLEEDILKAVLDNGYDEPTPIQAETIPDVLAGKDIIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++     I+ PTRELAAQ      K GK     V ++ GG     Q   L+
Sbjct: 61  QNVDLDNPNIQAI---IVSPTRELAAQTQAEIFKLGKYKRAKVQVVYGGADIRRQINALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + +++++ LV+DEAD MLDMGF+P I+ I    P  RQT
Sbjct: 118 SHPQIVVGTPGRLLDHIGRHTIRLDHVKTLVLDEADDMLDMGFLPDIEKIIEQTPSERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+   F+ +PK++ V +   TA+ ++  ++ +          +   + 
Sbjct: 178 LLFSATMPAPIKKIGVKFMTDPKQVTVKSKELTADLVDQYYIRSKEFEK---FDMLTRII 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              + K  ++F   K+ V  +   L  +G++   IHG++ Q+ RM IL  F++G + ++V
Sbjct: 235 DVQSPKLAVVFGRTKRRVDEVAKGLVARGYNAAGIHGDLTQQRRMNILHQFRDGQLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG HG + T V   ++ ++  +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGAHGTSVTFVTNWEMDYLRDV 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E+L +K+       L  L PP E+
Sbjct: 355 ERLTKKR-------LLPLKPPTEE 371


>gi|270290190|ref|ZP_06196416.1| ATP-dependent RNA helicase DeaD [Pediococcus acidilactici 7_4]
 gi|270281727|gb|EFA27559.1| ATP-dependent RNA helicase DeaD [Pediococcus acidilactici 7_4]
          Length = 511

 Score =  185 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 150/384 (39%), Positives = 228/384 (59%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ AVLD GY +PTPIQ +TIP VL   D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MKFTELGLEEDILKAVLDNGYDEPTPIQAETIPDVLAGKDIIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++     I+ PTRELAAQ      K GK     V ++ GG     Q   L+
Sbjct: 61  QNVDLDNPNIQAI---IVSPTRELAAQTQAEIFKLGKYKRAKVQVVYGGADIRRQINALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + +++++ LV+DEAD MLDMGF+P I+ I    P  RQT
Sbjct: 118 SHPQIVVGTPGRLLDHIGRHTIRLDHVKTLVLDEADDMLDMGFLPDIEKIIEQTPSERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+   F+ +PK++ V +   TA+ ++  ++ +          +   + 
Sbjct: 178 LLFSATMPAPIKKIGVKFMTDPKQVTVKSKELTADLVDQYYIRSKEFEK---FDMLTRII 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              + K  ++F   K+ V  +   L  +G++   IHG++ Q+ RM IL  F++G + ++V
Sbjct: 235 DVQSPKLAVVFGRTKRRVDEVAKGLVARGYNAAGIHGDLTQQRRMNILHQFRDGQLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG HG + T V   ++ ++  +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGAHGTSVTFVTNWEMDYLRDV 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E+L +K+       L  L PP E+
Sbjct: 355 ERLTKKR-------LLPLKPPTEE 371


>gi|312868913|ref|ZP_07729097.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris
           PB013-T2-3]
 gi|311095562|gb|EFQ53822.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris
           PB013-T2-3]
          Length = 498

 Score =  185 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 143/368 (38%), Positives = 220/368 (59%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+  +GY + TPIQ +TIP+VL+  DV G AQTGTGKTA+F LP++
Sbjct: 1   MKFSELGLSQSLLKAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    LI+ PTRELA Q  +   + GK+ ++ V ++ GG     Q K L+
Sbjct: 61  EHVDTDNPNIQ---ALIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+ DH NR  + + +I+ LV+DEAD ML+MGF+  I+ I    P  RQT
Sbjct: 118 HHPQILVGTPGRLRDHINRHTVKLGHIQTLVLDEADEMLNMGFLEDIEAIIKETPAERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++++ E F+ NP+ + +     T + ++  +V                  
Sbjct: 178 LLFSATMPPEIKRIGEQFMTNPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRL---I 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K+ V  L   L  +G++   IHG++ Q  R KI+  FK G + ++V
Sbjct: 235 DVQDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDRRTKIMKKFKNGDLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P+  ++Y+HRIGRTGRAG HG + T V   +++++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGTSLTFVTPNEMEYLHEI 354

Query: 361 EKLIEKKV 368
           EKL   ++
Sbjct: 355 EKLTRVRM 362


>gi|146294196|ref|YP_001184620.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145565886|gb|ABP76821.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 550

 Score =  185 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 185/479 (38%), Positives = 271/479 (56%), Gaps = 24/479 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ + IP VLQ  DV   AQTGTGKTA F LP+L
Sbjct: 12  MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLL 71

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG+  +    RTL+L PTRELAAQVA++ E YGK   L  A++ GG+P   Q  KL
Sbjct: 72  ELLSKGQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKL 131

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D +N+  +  N +EILV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 132 RHGVDVLVATPGRLMDLYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 191

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++++++  + NP  I V   ++ A T++                     
Sbjct: 192 NLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKAALLTQL--- 248

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  ++F   K     L  +LE+ G    AIHGN  Q +R K L++FK G ++++
Sbjct: 249 IKQHDWQQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVL 308

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+IK ++ 
Sbjct: 309 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLND 368

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDIAQHNHARKNNP-----------IPQKST 404
           IE+LI + +D     +   NP    P  +++ +  N+  K  P            P+  +
Sbjct: 369 IERLINRILDR--EVVEGFNPVHPLPESRLNSSSKNNTVKTIPSRRNHRSAGQAAPRAGS 426

Query: 405 GFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
           G D  K     + +          S   +D Q +   +   RG+ P    P++ G+++ 
Sbjct: 427 GRDGYKAEDKKEGAQRQQHTPSPKSNEHKDGQRSGDVA---RGHKPNDKNPRHSGEVSS 482


>gi|257899462|ref|ZP_05679115.1| helicase [Enterococcus faecium Com15]
 gi|293573030|ref|ZP_06683972.1| cold-shock deAd box protein a [Enterococcus faecium E980]
 gi|257837374|gb|EEV62448.1| helicase [Enterococcus faecium Com15]
 gi|291606932|gb|EFF36312.1| cold-shock deAd box protein a [Enterococcus faecium E980]
          Length = 503

 Score =  185 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 151/384 (39%), Positives = 228/384 (59%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LSP+++ +V  AG+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKELELSPELLKSVERAGFEEATPIQAETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R  ++    L++ PTRELA Q  +   + G++  + V  + GG     Q + L+
Sbjct: 61  EKIDPDRHELQ---GLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  ++ LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPEQRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F+++P  +++     TA+ I+  +V                  
Sbjct: 178 LLFSATMPPAIKNIGVKFMKSPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRL---F 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKNGHLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       +++L PP EK
Sbjct: 355 ENLTKKR-------MTTLRPPTEK 371


>gi|330899330|gb|EGH30749.1| helicase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 629

 Score =  185 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 179/493 (36%), Positives = 271/493 (54%), Gaps = 48/493 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L          R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPP----LEKIDIAQHNHARKNNPIPQKSTGF 406
            K + +IE++ ++K+   D +  D++++        E+ D+     AR       K+ G 
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARGDGDKNNGG 417

Query: 407 DR-------------------------RKKN------YSSQKSHIPLKESEKISKLQQDI 435
            R                         R+K        S Q++  P        +   + 
Sbjct: 418 RRDKGKDKGKEKPAAASATGERPARQPREKKPREGTPRSEQRASQPATPRPAADRAPDEF 477

Query: 436 QENDADSLGFRGN 448
           ++++ D+ G R +
Sbjct: 478 RDDEVDNFGNRAD 490


>gi|302186251|ref|ZP_07262924.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas
           syringae pv. syringae 642]
          Length = 629

 Score =  185 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 179/493 (36%), Positives = 271/493 (54%), Gaps = 48/493 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L          R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPP----LEKIDIAQHNHARKNNPIPQKSTGF 406
            K + +IE++ ++K+   D +  D++++        E+ D+     AR       K+ G 
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARGDGDKNNGG 417

Query: 407 DR-------------------------RKKN------YSSQKSHIPLKESEKISKLQQDI 435
            R                         R+K        S Q++  P        +   + 
Sbjct: 418 RRDKGKDKGKEKPAAASATGERPARQPREKKPREGTPRSEQRASQPATPRPAADRAPDEF 477

Query: 436 QENDADSLGFRGN 448
           ++++ D+ G R +
Sbjct: 478 RDDEVDNFGNRAD 490


>gi|66043725|ref|YP_233566.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas
           syringae pv. syringae B728a]
 gi|63254432|gb|AAY35528.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas
           syringae pv. syringae B728a]
          Length = 629

 Score =  185 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 179/493 (36%), Positives = 271/493 (54%), Gaps = 48/493 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L          R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPP----LEKIDIAQHNHARKNNPIPQKSTGF 406
            K + +IE++ ++K+   D +  D++++        E+ D+     AR       K+ G 
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARGDGDKNNGG 417

Query: 407 DR-------------------------RKKN------YSSQKSHIPLKESEKISKLQQDI 435
            R                         R+K        S Q++  P        +   + 
Sbjct: 418 RRDKGKDKGKEKPAAASATGERPARQPREKKPREGTPRSEQRASQPATPRPAADRAPDEF 477

Query: 436 QENDADSLGFRGN 448
           ++++ D+ G R +
Sbjct: 478 RDDEVDNFGNRAD 490


>gi|330865776|gb|EGH00485.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 500

 Score =  185 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 176/477 (36%), Positives = 269/477 (56%), Gaps = 21/477 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L          R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQH---NHARKNNPIPQKSTGFD 407
            K + +IE++ ++K+   D +  D++++    EK ++ +     ++R   P   K+ G  
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDITAVEA--EKPEVRERPDVRNSRGARPAGDKNNG-- 413

Query: 408 RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            R+     +    P   +    +  +  +E      G   +    + P       D+
Sbjct: 414 GRRDKGKDKGKEKPAAAAATGERPARQPREKKPRE-GTPRSEQRALQPSIPRPAADR 469


>gi|289625029|ref|ZP_06457983.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 516

 Score =  185 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 176/477 (36%), Positives = 269/477 (56%), Gaps = 21/477 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L          R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQH---NHARKNNPIPQKSTGFD 407
            K + +IE++ ++K+   D +  D++++    EK ++ +     ++R   P   K+ G  
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDITAVEA--EKPEVRERPDVRNSRGARPAGDKNNG-- 413

Query: 408 RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            R+     +    P   +    +  +  +E      G   +    + P       D+
Sbjct: 414 GRRDKGKDKGKEKPAAAAATGERPARQPREKKPRE-GTPRSEQRALQPSIPRPAADR 469


>gi|120597666|ref|YP_962240.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120557759|gb|ABM23686.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 550

 Score =  185 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 185/479 (38%), Positives = 271/479 (56%), Gaps = 24/479 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ + IP VLQ  DV   AQTGTGKTA F LP+L
Sbjct: 12  MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLL 71

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG+  +    RTL+L PTRELAAQVA++ E YGK   L  A++ GG+P   Q  KL
Sbjct: 72  ELLSKGQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKL 131

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D +N+  +  N +EILV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 132 RHGVDVLVATPGRLMDLYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 191

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++++++  + NP  I V   ++ A T++                     
Sbjct: 192 NLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKSALLTQL--- 248

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  ++F   K     L  +LE+ G    AIHGN  Q +R K L++FK G ++++
Sbjct: 249 IKQHDWQQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVL 308

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+IK ++ 
Sbjct: 309 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLND 368

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDIAQHNHARKNNP-----------IPQKST 404
           IE+LI + +D     +   NP    P  +++ +  N+  K  P            P+  +
Sbjct: 369 IERLINRILDR--EVVEGFNPVHPLPESRLNSSSKNNTVKTIPSRRNHRSAGQAAPRAGS 426

Query: 405 GFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
           G D  K     + +          S   +D Q +   +   RG+ P    P++ G+++ 
Sbjct: 427 GRDGYKAEDKKEGAQRQQHTPSPKSNEHKDGQRSGDVA---RGHKPNDKNPRHSGEVSS 482


>gi|330951359|gb|EGH51619.1| helicase [Pseudomonas syringae Cit 7]
          Length = 629

 Score =  185 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 174/455 (38%), Positives = 260/455 (57%), Gaps = 19/455 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L          R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPP----LEKIDIAQHNHARKNNPIPQKSTGF 406
            K + +IE++ ++K+   D +  D++++        E+ D+     AR       K+ G 
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARGDGDKNNG- 416

Query: 407 DRRKKNYSSQKSHIPLKESEKISKLQQDIQENDAD 441
             R+     +    P   S    +  +  +E    
Sbjct: 417 -GRRDKGKDKGKEKPAAASATGERPARQPREKKPR 450


>gi|206603692|gb|EDZ40172.1| Putative ATP-dependent RNA helicase [Leptospirillum sp. Group II
           '5-way CG']
          Length = 444

 Score =  185 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 153/424 (36%), Positives = 232/424 (54%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP+++ A+ D G+  PTPIQ ++IP V+   D+ GIAQTGTGKT  F+LP+L
Sbjct: 1   MTFEALGLSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + +GR      R L+L PTRELA Q+    + Y K  +    LL+GG+ F  Q + L+
Sbjct: 61  HKIAEGRRHGIRNRALVLSPTRELATQIHQAAKDYAKYLHTNAVLLVGGVDFIRQERNLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R  D+++ TPGR+LDH  R  L + N  +++IDEADRMLDMGF+P I  I   +P  RQ+
Sbjct: 121 RNWDIVVATPGRLLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKGRQS 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +Q+++  F  +   + V      ++ I   ++       K   L + L +
Sbjct: 181 LLFSATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVLDE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      IIF   K++  +L  +L   G+   A+HG+  Q  R ++LS F+ G ++++V
Sbjct: 241 GKSETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKVLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + HV N+D+P  AE+Y+HRIGRTGRAGR G+A +     D   + +I
Sbjct: 301 ATDVAARGLDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPADRDIVRSI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E +  K +      +      L K    + +  R  +   +    F   +      +S  
Sbjct: 361 ETMAGKPIPHSPHSIPLSEQSLRKTFTRRPSFGRSTDRTSRGENRFRTDRGQQGRPRSST 420

Query: 421 PLKE 424
               
Sbjct: 421 SGNR 424


>gi|237798154|ref|ZP_04586615.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021006|gb|EGI01063.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 629

 Score =  185 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 180/493 (36%), Positives = 271/493 (54%), Gaps = 48/493 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L          R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  +IF   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITVGAWEQVLIFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPP----LEKIDIAQHNHARKNNPIPQKSTGF 406
            K + +IE++ ++K+   D +  D++++        E+ D+     AR       K+ G 
Sbjct: 358 EKLLKSIERMTKQKIPDGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARADGDKNNGG 417

Query: 407 DR-------------------------RKKN------YSSQKSHIPLKESEKISKLQQDI 435
            R                         R+K        S Q++  P        +   + 
Sbjct: 418 RRDKGKDKGKEKPAAAAATGERPARQPREKKPREGTPRSEQRASQPATPRPASDRAPDEF 477

Query: 436 QENDADSLGFRGN 448
           ++++ D+ G R +
Sbjct: 478 RDDEVDNFGNRAD 490


>gi|227825056|ref|ZP_03989888.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
 gi|226905555|gb|EEH91473.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
          Length = 532

 Score =  185 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 144/386 (37%), Positives = 220/386 (56%), Gaps = 10/386 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L  K++ A+ D G+ +P+PIQ   IPL L+  D+ G AQTGTGKTA+F +P++ 
Sbjct: 8   TFEDLNLDKKILSALKDMGFEEPSPIQKGAIPLALEGDDIIGQAQTGTGKTAAFGIPIIQ 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++   + R  + L++ PTREL  QVA+   K G+   + V  + GG P E Q + L+ 
Sbjct: 68  SIDE---KNRHVQALVMSPTRELCIQVAEEISKIGRLKRVHVLPVYGGQPIERQIRSLKH 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+I TPGR+LDH  RG + +++I  LV+DEAD MLDMGFI  I+ I   VP  RQT+
Sbjct: 125 GVQVVIGTPGRLLDHLRRGTISLDHIHFLVLDEADEMLDMGFIEDIETIIKEVPPERQTM 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +  +S+ ++           +   E +    +  Y   ++        +  
Sbjct: 185 LFSATMPRPILSISKKYM-----RTPKVVAIHKEIVTAPTIDQYYYETRDKVDGLCRILD 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFC  KK V  L  +L  +G+    +HG++ Q  R +++  F++  + ++VA
Sbjct: 240 TTDDCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQTQRDRVMKKFRQDQVDILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV NFDVP   E+Y+HRIGRTGRAG  G A T +   + + +  IE
Sbjct: 300 TDVAARGIDIDNITHVVNFDVPQDPESYVHRIGRTGRAGNTGVALTFITPREFRQLKLIE 359

Query: 362 KLIEKKV--DWLNGDLSSLNPPLEKI 385
           + ++ K+    L  D + L    E+I
Sbjct: 360 RSVKTKIIRGQLPTDANVLEKQREQI 385


>gi|281422527|ref|ZP_06253526.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
           DSM 18205]
 gi|281403351|gb|EFB34031.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
           DSM 18205]
          Length = 568

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 150/450 (33%), Positives = 244/450 (54%), Gaps = 18/450 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  +   TP+Q K IP +L+ HDV G+AQTGTGKTA+++LP+L
Sbjct: 1   MYFDELDLNDNVLDALYDMRFDTCTPVQEKCIPEILEGHDVLGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP----FEAQN 116
           + L+ G         +I+ PTRELA Q+    + +G       ++ + G      ++ + 
Sbjct: 61  SKLDDGGYPKDAINCVIMSPTRELAQQIDQAMQGFGYYLQGVSSVAVYGGNDGNRYDQEL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I+ I S +P 
Sbjct: 121 RSLRMGADVVIATPGRLISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIKTIASKLPK 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T QT++FSATM ++++++++  L+NP  I++       +         Y  Y  +   + 
Sbjct: 181 TCQTIMFSATMPEKIEELAKTLLKNPVEIKLAVSKPAEKI----KQEAYVCYETQKMTII 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + +     +K  I+F   K  V  L  SL++ G +  A+H +++Q  R  ++  FK G  
Sbjct: 237 KDIFKAGDLKRVIVFSGSKFKVKQLAASLQQIGVNCGAMHSDLEQAERDDVMFKFKSGQY 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ ARG+DI D+  V N+DVP+  E+Y+HRIGRT RA R G+A T V++ED   
Sbjct: 297 DVLVATDIVARGIDIDDIEMVINYDVPHDTEDYVHRIGRTARANRDGRAITFVSEEDQYW 356

Query: 357 IDAIEKLIEKKVDWLN--------GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
              IEK +EK VD +          +   LN P +K    ++N                 
Sbjct: 357 FQQIEKFLEKVVDKMPLPEGCGEGPEYIKLNKPKKKGANGRNNRRGNGRNGEGGKNSAKN 416

Query: 409 RKKNYSSQKSH--IPLKESEKISKLQQDIQ 436
           R++    Q SH   P K +E+  K  ++ +
Sbjct: 417 RRQKDRDQTSHKRKPNKPNERQEKTPRNNE 446


>gi|320330891|gb|EFW86865.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 625

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 180/490 (36%), Positives = 270/490 (55%), Gaps = 45/490 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L          R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSNDITSLASKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPP----LEKIDIAQHNHAR----KNN----- 397
            K + +IE++ ++K+   D +  D++++        E+ D+     AR    KNN     
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPAGDKNNGGRRD 417

Query: 398 -------------------PIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQEN 438
                              P  Q      R     S Q++  P        +   + +++
Sbjct: 418 KGKDKGKEKPAAAAATGERPARQPREKKPREGTPRSEQRASQPSIPRPAADRAPDEFRDD 477

Query: 439 DADSLGFRGN 448
           + D+ G R +
Sbjct: 478 EVDNFGNRAD 487


>gi|320322003|gb|EFW78099.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 625

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 180/490 (36%), Positives = 270/490 (55%), Gaps = 45/490 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L          R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSNDITSLASKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPP----LEKIDIAQHNHAR----KNN----- 397
            K + +IE++ ++K+   D +  D++++        E+ D+     AR    KNN     
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPAGDKNNGGRRD 417

Query: 398 -------------------PIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQEN 438
                              P  Q      R     S Q++  P        +   + +++
Sbjct: 418 KGKDKGKEKPAAAAATGERPARQPREKKPREGTPRSEQRASQPSIPRPAADRAPDEFRDD 477

Query: 439 DADSLGFRGN 448
           + D+ G R +
Sbjct: 478 EVDNFGNRAD 487


>gi|332652507|ref|ZP_08418252.1| putative ATP-dependent RNA helicase RhlE [Ruminococcaceae bacterium
           D16]
 gi|332517653|gb|EGJ47256.1| putative ATP-dependent RNA helicase RhlE [Ruminococcaceae bacterium
           D16]
          Length = 628

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 161/413 (38%), Positives = 230/413 (55%), Gaps = 8/413 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL P+++ A+ + GY KP+PIQ + IP  L   DV G AQTGTGKT +F  P+L
Sbjct: 1   MTFEDLGLCPQILAALKEEGYEKPSPIQEQAIPPALAGRDVLGCAQTGTGKTCAFAAPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L    A     R LIL PTRELA Q+ ++FE YG++  L  A++ GG+    Q +KL 
Sbjct: 61  QRLSNKPASGHPIRALILTPTRELAIQIGESFEHYGRHLALRCAVIFGGVGQAPQVEKLG 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+ D + +G + +N++EI V+DEADRMLDMGFI  ++ I   +P  +QT
Sbjct: 121 KGVDILVATPGRLGDLYQQGFIHLNDLEIFVLDEADRMLDMGFIHDVKKILKWLPEKKQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+ ++  + L +P R+ V+  SS  E I             K   L     
Sbjct: 181 LFFSATMPKEIAELVNSLLHHPARVAVDPVSSPVEAIRQSVYFVDRGNKTKLLSLL---M 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +KN ++F   K     +   L K G +  AIHGN  Q +R + L++FK G I+ +V
Sbjct: 238 DQLGVKNALVFTRTKHGANKVARDLVKAGITAAAIHGNKSQTARQQALADFKSGAIRCLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++ HVFN+++P   E Y+HRIGRTGRAG  G A       +   +  I
Sbjct: 298 ATDIAARGLDIEELSHVFNYNLPEVPETYVHRIGRTGRAGHGGTAVAFCDFSEKPLLKEI 357

Query: 361 EKLIEKKVDWL---NGDLSSLNPPLEKID--IAQHNHARKNNPIPQKSTGFDR 408
           EKLI + +  +      +  L  P    +  I     A+      ++    D 
Sbjct: 358 EKLIGRAIPVVEDHPYPMVDLQAPKRDKNGRIINEEDAQARAAAKEQRRARDE 410


>gi|296132950|ref|YP_003640197.1| DEAD/DEAH box helicase domain protein [Thermincola sp. JR]
 gi|296031528|gb|ADG82296.1| DEAD/DEAH box helicase domain protein [Thermincola potens JR]
          Length = 529

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 163/386 (42%), Positives = 232/386 (60%), Gaps = 8/386 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L LS +++ AV + G+ +PTPIQ + IP++L  HDV G AQTGTGKTA+F +P+L 
Sbjct: 6   TFESLQLSRRILQAVKEMGFEEPTPIQAEAIPVLLNGHDVIGQAQTGTGKTAAFGIPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     R R  + L++ PTRELA QVA+   K GK  ++    + GG   + Q   L+R
Sbjct: 66  KL---NPRYRAVQALVITPTRELAIQVAEEIMKLGKFKDVRTLAVYGGQSIDRQIGALKR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH NRG L + ++++LV+DEAD MLDMGFI  I+ I    P TRQTL
Sbjct: 123 GVQVVVGTPGRLLDHINRGTLRLQHLKMLVLDEADEMLDMGFIDDIEAIIKETPETRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+Q+++  +L+NP+ + V+    T  +I       Y    K        +  
Sbjct: 183 LFSATMPHEIQQLARKYLKNPRLVAVSKDELTVPSI---EQVYYEVREKTKLESLCRVLE 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   IIFC  K+ V  L  SLE +G+    +HG++ Q  R K++  FK G +  +VA
Sbjct: 240 TIDVTLAIIFCKTKRGVDELVASLETRGYQAEGLHGDLTQAQRNKVMRKFKNGQVDYLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI +V HV N+D+P   E Y+HRIGRTGRAGR GKA T +  E+ + +  IE
Sbjct: 300 TDVAARGLDIENVSHVINYDIPQDPEVYVHRIGRTGRAGRSGKAITFIVPEEYRQLRLIE 359

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDI 387
           K+I  ++   N  L S+    E+  +
Sbjct: 360 KIIGARIARKN--LPSIADIFERQKV 383


>gi|330984676|gb|EGH82779.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 625

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 180/490 (36%), Positives = 270/490 (55%), Gaps = 45/490 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L          R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPP----LEKIDIAQHNHAR----KNN----- 397
            K + +IE++ ++K+   D +  D++++        E+ D+     AR    KNN     
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPAGDKNNGGRRD 417

Query: 398 -------------------PIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQEN 438
                              P  Q      R     S Q++  P        +   + +++
Sbjct: 418 KGKDKGKEKPATAAATGERPARQPREKKPREGTPRSEQRASQPSIPRPAADRAPDEFRDD 477

Query: 439 DADSLGFRGN 448
           + D+ G R +
Sbjct: 478 EVDNFGNRAD 487


>gi|257483568|ref|ZP_05637609.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 514

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 180/490 (36%), Positives = 270/490 (55%), Gaps = 45/490 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L          R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPP----LEKIDIAQHNHAR----KNN----- 397
            K + +IE++ ++K+   D +  D++++        E+ D+     AR    KNN     
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPAGDKNNGGRRD 417

Query: 398 -------------------PIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQEN 438
                              P  Q      R     S Q++  P        +   + +++
Sbjct: 418 KGKDKGKEKPATAAATGERPARQPREKKPREGTPRSEQRASQPSIPRPAADRAPDEFRDD 477

Query: 439 DADSLGFRGN 448
           + D+ G R +
Sbjct: 478 EVDNFGNRAD 487


>gi|71736442|ref|YP_272752.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298485028|ref|ZP_07003125.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|71556995|gb|AAZ36206.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298160438|gb|EFI01462.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 625

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 180/490 (36%), Positives = 270/490 (55%), Gaps = 45/490 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L          R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPP----LEKIDIAQHNHAR----KNN----- 397
            K + +IE++ ++K+   D +  D++++        E+ D+     AR    KNN     
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPAGDKNNGGRRD 417

Query: 398 -------------------PIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQEN 438
                              P  Q      R     S Q++  P        +   + +++
Sbjct: 418 KGKDKGKEKPAAAAATGERPARQPREKKPREGTPRSEQRASQPSIPRPAADRAPDEFRDD 477

Query: 439 DADSLGFRGN 448
           + D+ G R +
Sbjct: 478 EVDNFGNRAD 487


>gi|319427540|gb|ADV55614.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 539

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 188/483 (38%), Positives = 277/483 (57%), Gaps = 32/483 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ + IP VLQ  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG+  +    RTL+L PTRELAAQVA++ E YGK   L  A++ GG+P   Q  KL
Sbjct: 61  ELLSKGQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D +N+  +  N +EILV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 RHGVDVLVATPGRLMDLYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++++++  + NP  I V   ++ A T++                     
Sbjct: 181 NLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKSALLTQL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  ++F   K     L  +LE+ G    AIHGN  Q +R K L++FK G ++++
Sbjct: 238 IKQHDWQQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+IK ++ 
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLND 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDIAQHNHARKNNP-----------IPQKST 404
           IE+LI + +D     +   NP    P  +++ +  N+  K  P            P+  +
Sbjct: 358 IERLINRILDR--EVVEGFNPVHPLPESRLNSSSKNNTVKTIPSRRNHRSAGQAAPRAGS 415

Query: 405 GFD----RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
           G D      KK  + ++ H P  +S +     +D Q +   +   RG+ P    P++ G+
Sbjct: 416 GRDGYKAEDKKEGTQRQQHTPSPKSNE----HKDGQRSGDVA---RGHKPNDKNPRHSGE 468

Query: 461 LND 463
           ++ 
Sbjct: 469 VSS 471


>gi|78223770|ref|YP_385517.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15]
 gi|78195025|gb|ABB32792.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15]
          Length = 451

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 164/449 (36%), Positives = 238/449 (53%), Gaps = 11/449 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +  L P+V+  V  AGY  PTPIQ + IP V++  DV G+AQTGTGKTA+F LP+L
Sbjct: 1   MEFKEFNLHPQVMAGVTAAGYTTPTPIQAQAIPTVMEGRDVMGLAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +G       R L++ PTRELA Q+ D+F   G+   L    + GG+    Q +KL+
Sbjct: 61  HRLAQG--ERGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVNVNPQIQKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA++++  PGR+LDH  +G + ++++E+LV+DEAD+M DMGF+P ++ I   +P  RQT
Sbjct: 119 AGAEIVVACPGRLLDHMAQGTIDLSHLEVLVLDEADQMFDMGFLPDLRRILKQLPPKRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  +++       Q   R  V     T         A Y         L   L 
Sbjct: 179 LLFSATMPIDIRV----LAQEILRDPVTVQVGTVAPAVTVTHALYPVEQHLKTPLLLELL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ +IF   K     L   +EK G+   ++ GN+ Q  R   L  F++GT Q++V
Sbjct: 235 RHTDTESVLIFTRTKHRAKRLGEQMEKAGYKAASLQGNLSQNRRQAALDGFRDGTFQILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV N+D+P+ AE YIHRIGRTGRA R G AFT+V  ED   +  I
Sbjct: 295 ATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTMVTSEDTAMVRTI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+ +   ++         + P  K D       R   P+P +     ++        SH 
Sbjct: 355 ERKLNTSLERRTMAGFDYSVPAPKKDTEFARPPR--QPMPSRRPTEAKKGGARQGA-SHQ 411

Query: 421 P--LKESEKISKLQQDIQENDADSLGFRG 447
           P   K +E      Q  + N A + G  G
Sbjct: 412 PGSAKPAEGRRSQPQAAKANPARTAGTGG 440


>gi|170768930|ref|ZP_02903383.1| putative ATP-dependent RNA helicase RhlE [Escherichia albertii
           TW07627]
 gi|170122002|gb|EDS90933.1| putative ATP-dependent RNA helicase RhlE [Escherichia albertii
           TW07627]
          Length = 447

 Score =  184 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 163/427 (38%), Positives = 246/427 (57%), Gaps = 6/427 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKNLAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 YMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IEKL++K++  +       +P ++   I      R      Q+    +   K+ S++ 
Sbjct: 358 RDIEKLLKKEIPRIAVPGYEPDPSIKAEPIQNGRQQRGGGRSQQQPRRAEGGAKSGSAKP 417

Query: 418 SHIPLKE 424
           +  P + 
Sbjct: 418 AEKPSRR 424


>gi|260558407|ref|ZP_05830603.1| helicase [Enterococcus faecium C68]
 gi|261207113|ref|ZP_05921802.1| helicase [Enterococcus faecium TC 6]
 gi|289567232|ref|ZP_06447617.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
 gi|293556891|ref|ZP_06675452.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
 gi|293567807|ref|ZP_06679148.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
 gi|294615128|ref|ZP_06695014.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
 gi|294617803|ref|ZP_06697416.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
 gi|260075581|gb|EEW63887.1| helicase [Enterococcus faecium C68]
 gi|260078741|gb|EEW66443.1| helicase [Enterococcus faecium TC 6]
 gi|289160980|gb|EFD08895.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
 gi|291589392|gb|EFF21199.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
 gi|291592070|gb|EFF23693.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
 gi|291595943|gb|EFF27223.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
 gi|291600975|gb|EFF31266.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
          Length = 503

 Score =  184 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 152/384 (39%), Positives = 228/384 (59%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LSP+++ +V  AG+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKELELSPELLKSVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R  ++    L++ PTRELA Q  +   + G++  + V  + GG     Q + L+
Sbjct: 61  EKIDPDRHELQ---GLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  ++ LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F++NP  +++     TA+ I+  +V                  
Sbjct: 178 LLFSATMPPAIKNIGVKFMKNPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRL---F 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       +++L PP EK
Sbjct: 355 ENLTKKR-------MTTLRPPTEK 371


>gi|304315659|ref|YP_003850804.1| DEAD/DEAH box helicase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302777161|gb|ADL67720.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 514

 Score =  184 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 143/408 (35%), Positives = 236/408 (57%), Gaps = 11/408 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF +L L+ K++ A+ D G+ +P+ IQ + IP++LQ  DV G A+TGTGKT ++  P++
Sbjct: 1   MDFKELNLNEKILKAIDDMGFEEPSKIQSEVIPVLLQGSDVIGQAETGTGKTLAYGAPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +V     L+L PTRELA QV D   + GK   + +  + GG+  + Q K ++
Sbjct: 61  NNIGSNEGKVF---CLVLTPTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDRQIKAIK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D++I TPGR+LD   R  L +N+++ LV+DEAD MLDMGFI  I+ I +     RQT
Sbjct: 118 RGVDIIIGTPGRVLDLIKRDILRLNDVKYLVLDEADEMLDMGFIDDIKEIINHTNKERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSATM DE++ +++ ++++  +       +   +    F        +  +L +  + 
Sbjct: 178 MMFSATMPDEIKNLAKKYMKSDAKFISIVKKTMTVSTVQHFYYEVKNQERFESLCR--IL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +   + IIFC  KK V  L  +++ +G++V  +HG++ Q  R+  L  FKEG +  +V
Sbjct: 236 DVEEPSSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGNLDFLV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++ HV N+++P   E+Y+HRIGRTGRA R G A+TLV   +   +  I
Sbjct: 296 ATDVAARGIDIENLTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYPALKRI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           E+  + K+           P ++ I   ++N   K+     ++ G+ R
Sbjct: 356 ERETKCKIRRKE------LPTIDDIFQVKYNKMIKDIKRVLENDGYKR 397


>gi|85711377|ref|ZP_01042436.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
 gi|85694878|gb|EAQ32817.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
          Length = 423

 Score =  184 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 173/438 (39%), Positives = 250/438 (57%), Gaps = 16/438 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F++LGL P+++ A+   GY +PTPIQ + IP V+  +DV   AQTGTGKTA F LP+ 
Sbjct: 1   MTFSELGLCPEILNALTRQGYTEPTPIQAQAIPAVMAGNDVMAAAQTGTGKTAGFTLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +    RA+    R LIL PTRELAAQV ++   YGK+  L+ A++ GG+    Q  KL
Sbjct: 61  EMLKGNERAKANTARVLILTPTRELAAQVGESVANYGKDLPLSYAVVFGGVKINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD + +  +    +E LV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 RKGVDILVATPGRLLDLYQQNAIRFPQLETLVLDEADRMLDMGFIHDIKKIIKLLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++K++++ + NP  I V  P++TAE IE    A    +      +   +
Sbjct: 181 NLMFSATFSDEIRKLAKSLVNNPVEISVAAPNATAERIEQTLYAAEKTHK---PRMLMQI 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   I+F   K     L   L+K GF   AIHGN  Q +R K LS+FK G +Q++
Sbjct: 238 LRNLNLPQVIVFSRTKHGANRLVKQLDKDGFLAAAIHGNKSQGARTKALSDFKSGAVQVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + +V N+D+P  AE+Y+HRIGRTGRAG+ G A +LV  E+ + + A
Sbjct: 298 VATDIAARGLDIEKLPYVINYDLPQVAEDYVHRIGRTGRAGQVGHAISLVMDEEFRTLKA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IEKLI + ++               +D           P P++     R+ +   S K  
Sbjct: 358 IEKLIGQPIER------------RTLDGFDEVELTGKTPPPKREQRPPRKSRGAPSDKQK 405

Query: 420 IPLKESEKISKLQQDIQE 437
            P +   +     +  Q 
Sbjct: 406 SPGRAKHRRQGSNKSSQR 423


>gi|212638043|ref|YP_002314563.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
 gi|212559523|gb|ACJ32578.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
          Length = 471

 Score =  184 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 153/383 (39%), Positives = 227/383 (59%), Gaps = 8/383 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F + GLSP+++ AV   G+ + TPIQ  TIPL LQ  DV G AQTGTGKTA+F +P++
Sbjct: 5   VKFNEFGLSPELMKAVSKMGFEEATPIQAATIPLSLQNRDVIGQAQTGTGKTAAFGIPLI 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+     ++ PTRELA QV++   K G    + V  + GG   E Q + L+
Sbjct: 65  EKIDMNNDAVQAI---VVAPTRELAIQVSEELYKIGSTKRVRVLPIYGGQDIERQIRALK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRILDH  R  L + ++  +V+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 122 KHPHIIVGTPGRILDHIQRRTLRLQHVHTVVLDEADEMLNMGFVEDIEAILSHVPTERQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + +++++E F+ NP+ + V     T   I            KK       L 
Sbjct: 182 LLFSATMPEPIRRIAERFMNNPELVRVKAKEMTVPNI---EQYYIEIQEKKKFDTLTRLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              + +  I+F   K+ V  L  +L  +G++   IHG++ Q  R+ +L  FKEG+I ++V
Sbjct: 239 DIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIDILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   +I  +  I
Sbjct: 299 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGMAITFVTPREIGQLHHI 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           EK  ++K++ +     +L+  LE
Sbjct: 359 EKTTKRKMERMKP--PTLDEALE 379


>gi|309776780|ref|ZP_07671754.1| ATP-dependent RNA helicase RhlE [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915528|gb|EFP61294.1| ATP-dependent RNA helicase RhlE [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 438

 Score =  184 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 159/443 (35%), Positives = 257/443 (58%), Gaps = 12/443 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L ++  ++ A+ + GY+ PTPIQ + IP  LQ  D+ G AQTGTGKTA+F +P +
Sbjct: 1   MKFQTLNITEPILKAINEQGYLTPTPIQEQAIPYALQGRDILGCAQTGTGKTAAFSIPTI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L +   R    R+LI+ PTRELA Q+ +N   Y K+  +  A++ GG+P + Q + L+
Sbjct: 61  QLLNRHEKR--YIRSLIVTPTRELAIQIQENICAYAKHTGIRSAVIFGGVPQKPQERILK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGR+ D   +G + +  IEI ++DEADRMLDMGF+P ++ + + +P  +QT
Sbjct: 119 AGVDILVATPGRLNDLIQQGIVDIGRIEIFILDEADRMLDMGFLPDVKRLIAKLPKKKQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++ ++E+ L+NP  IEV   ++T E I       Y         L   L 
Sbjct: 179 LFFSATMPKEIRALAESLLKNPISIEVTPAATTVEKI---DQTLYYVDKANKKRLLLKLL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++ ++N ++F   K N   L   L + G +   IHGN  Q +R + L  FKEG  +++V
Sbjct: 236 NKNRVQNALVFTRTKSNANRLAKYLNEAGVAAGVIHGNKSQNARQQALLQFKEGKSRVLV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HVFN+D+PN AE Y+HRIGRTGRAGR G A       + ++I +I
Sbjct: 296 ATDIAARGIDVQELSHVFNYDIPNEAEVYVHRIGRTGRAGRQGTAIAFSDINEAEYIKSI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ---HNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           EKLI  ++            P+  ++++      H RK +   + ++  + +++  S++ 
Sbjct: 356 EKLIRMRIPV----QEDREFPMRNMEVSAPTPQQHKRKRSTPSKSASNGNEKRRAASAKA 411

Query: 418 SHIPLKESEKISKLQQDIQENDA 440
           S  P   + K +  ++   +   
Sbjct: 412 SQKPAAPAGKQNHRRRSQSQKRP 434


>gi|259501949|ref|ZP_05744851.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           antri DSM 16041]
 gi|259170126|gb|EEW54621.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           antri DSM 16041]
          Length = 512

 Score =  184 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 140/368 (38%), Positives = 220/368 (59%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F++LGLS  ++ A+  +GY + TPIQ +TIP+VL+  DV G AQTGTGKTA+F LP++
Sbjct: 15  LNFSELGLSQSLLKAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPII 74

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    LI+ PTREL  Q  +   + GK+ ++ V ++ GG     Q K L+
Sbjct: 75  EHVDTDNPNIQ---ALIISPTRELVIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLK 131

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+ DH NR  + + +I+ LV+DEAD ML+MGF+  I+ I    P  RQT
Sbjct: 132 HHPQILVGTPGRLRDHINRHTVKLGHIQTLVLDEADEMLNMGFLEDIEAIIKETPAERQT 191

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++++ E F+ +P+ + +     T + ++  +V                  
Sbjct: 192 LLFSATMPPEIKRIGEQFMTDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRL---I 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K+ V  L   L  +G++   IHG++ Q  R KI+  FK G + ++V
Sbjct: 249 DVQDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDRRTKIMKKFKHGDLDILV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P+  ++Y+HRIGRTGRAG HG + T V   +++++  I
Sbjct: 309 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGTSLTFVTPNEMEYLHEI 368

Query: 361 EKLIEKKV 368
           EKL   ++
Sbjct: 369 EKLTRVRM 376


>gi|254468401|ref|ZP_05081807.1| dead/deah box helicase domain protein [beta proteobacterium KB13]
 gi|207087211|gb|EDZ64494.1| dead/deah box helicase domain protein [beta proteobacterium KB13]
          Length = 444

 Score =  184 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 150/444 (33%), Positives = 243/444 (54%), Gaps = 14/444 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F++ G  P +  A+    Y  PTPIQ + IP+VL   DV   AQTGTGKTA+F LP+ 
Sbjct: 1   MSFSNFGFIPPIGKAISRINYSTPTPIQEQCIPVVLSGKDVLASAQTGTGKTAAFCLPLL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                  +    R   P  LIL PTRELA Q+    +++    +  +  ++GG+ ++ QN
Sbjct: 61  NLVEKKPKHKHKRNISPDVLILSPTRELATQIEQELKRFSHFMDTNIVSVVGGVSYKLQN 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+   + L+ TPGR++D   + K+ + +I+ LVIDEADRMLDMGFIP I+ I      
Sbjct: 121 KLLKSNVNFLVATPGRLMDLVKQRKINLKHIDALVIDEADRMLDMGFIPDIKKIFESTSQ 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +Q L+F+AT+  +++K+++ FL++P+RI V   + + + I+           KK  L+ 
Sbjct: 181 DQQVLMFTATLNKQIEKIAQQFLKDPQRIAVEQENKSNKNIQQIAYPVADYNQKKLVLVD 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             + ++  +   IIF   K+    L   L         +HG++ QR R + ++ FK   I
Sbjct: 241 --VLNEADLNQAIIFTATKREADRLSDELYLMNHRSKTLHGDMSQRERTRTINRFKNNEI 298

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+D+ D+ HV NFD+P + E+YIHRIGRTGRA R GKA +LV  ++   
Sbjct: 299 QILVATDVAARGIDVDDITHVINFDLPRQVEDYIHRIGRTGRAERKGKAISLVIDKEKFM 358

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY--S 414
           +  IEK    K++ +    S+ +  L       +          ++S+G  ++   +  S
Sbjct: 359 LQKIEKYANIKIEVIKSTHSTSDLSL------VYKKKESGFKKKRRSSGSRKKNDKFTSS 412

Query: 415 SQKSHIPLKESEKISKLQQDIQEN 438
           S++     K   K    ++ +++N
Sbjct: 413 SKRKKHGFKADVKAKSRRRPVKKN 436


>gi|330886235|gb|EGH20136.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. mori str.
           301020]
          Length = 625

 Score =  184 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 180/490 (36%), Positives = 270/490 (55%), Gaps = 45/490 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L          R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVSRLAANHKRSL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPP----LEKIDIAQHNHAR----KNN----- 397
            K + +IE++ ++K+   D +  D++++        E+ D+     AR    KNN     
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPAGDKNNGGRRD 417

Query: 398 -------------------PIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQEN 438
                              P  Q      R     S Q++  P        +   + +++
Sbjct: 418 KGKDKGKEKPAAASATGERPARQPREKKPREGTPRSEQRASQPSIPRPAADRAPDEFRDD 477

Query: 439 DADSLGFRGN 448
           + D+ G R +
Sbjct: 478 EVDNFGNRAD 487


>gi|15896005|ref|NP_349354.1| DEAD-box ATP dependent DNA helicase [Clostridium acetobutylicum
           ATCC 824]
 gi|15025785|gb|AAK80694.1|AE007772_6 ATP dependent RNA helicase DeaD, superfamily II [Clostridium
           acetobutylicum ATCC 824]
 gi|325510158|gb|ADZ21794.1| ATP dependent RNA helicase DeaD, superfamily II [Clostridium
           acetobutylicum EA 2018]
          Length = 481

 Score =  184 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 138/429 (32%), Positives = 234/429 (54%), Gaps = 13/429 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGLS +++ ++   GY KP+ IQ K IP++L   D+   A+TG+GKTA+F +P+ 
Sbjct: 4   LSFRDLGLSEEILKSIEKLGYKKPSSIQEKVIPVILNGKDIIAKAKTGSGKTAAFAIPVC 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +E        P+ L+L PTRELA Q+ ++F   G+   L    + G  P   Q ++L+
Sbjct: 64  EKIELEERE---PQVLVLAPTRELAYQIKEDFLNIGRFKRLRCISIFGKEPISNQIRELK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+LDH  RG L +  ++  +IDEAD ML+MGFI  +++I   +P  + T
Sbjct: 121 QRVHIVVGTPGRVLDHIERGTLNLEKVKYFIIDEADEMLNMGFIEQVESILIKMPKNKNT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT+ +E+  +S+ +++N +        +  +T        Y   S++   L + + 
Sbjct: 181 FLFSATLPEEIVMLSKKYMKNFE---NIEVQNEGKTKGGIHQVYYEVESREKFDLLKKVI 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++   + IIFC  K NV ++   ++   FS  AIHG + Q +R+ +++ FK G    ++
Sbjct: 238 YKEVPGSSIIFCRTKNNVEDVLVKMKNMKFSCMAIHGGMLQENRIAVMNAFKRGEFTFLI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ +V HV N+D+P   E+YIHRIGRTGR G  G A T V  ++ + +  I
Sbjct: 298 ATDVAARGIDVENVTHVINYDIPMEKESYIHRIGRTGRMGNKGIAITFVTSKEERFLKEI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+    ++      +    P  E++   Q      +  +  K+      K N    K ++
Sbjct: 358 EEQFSLEI------IKEEPPTREEVKKGQEVFKTASKQL-NKTKANKSEKLNKDITKIYL 410

Query: 421 PLKESEKIS 429
              + +KI 
Sbjct: 411 SAGKKKKIR 419


>gi|288942468|ref|YP_003444708.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288897840|gb|ADC63676.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
           180]
          Length = 438

 Score =  184 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 167/417 (40%), Positives = 243/417 (58%), Gaps = 6/417 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS +++ A+   GY +PTPIQ K IP VL R DV   AQTGTGKTA+F LPML
Sbjct: 1   MSFSALGLSAELLRAIAAQGYTQPTPIQSKAIPAVLARRDVLAAAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L +   R R PR L+L PTRELAAQV ++   YG++  L    + GG+    Q   L 
Sbjct: 61  HLLSQSTQRQRAPRALVLTPTRELAAQVGESVSTYGQHLPLRALQIFGGVGMVPQTTALR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+LDH  +G + ++ IE  V+DEADRMLDMGFI  I+ +  L+P  RQ 
Sbjct: 121 RGVDILVATPGRLLDHVGQGHVDLSKIEFFVLDEADRMLDMGFIHDIRRVLKLLPSKRQN 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT + E+++++   L +P RIEV   ++ AET+         +  +          
Sbjct: 181 LLFSATYSREIEQLAIGLLHDPLRIEVAPRNTAAETVTQVVHPVAREAKRSLLSHL---I 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   +  +IF   K     L   L + G +  AIHGN  Q +R + L++FK G ++ +V
Sbjct: 238 LQGDWQQVLIFTRTKHGANRLAEQLGRDGITAAAIHGNKSQGARTRALADFKSGALRALV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAG  G A +L++ ++   +  I
Sbjct: 298 ATDIAARGLDIDRLPHVVNFELPNVPEDYVHRIGRTGRAGSDGTAVSLISPDERGLLAGI 357

Query: 361 EKLIEKKVDWLNGD-LSSLNPPLEKI--DIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           E+L+ +++D    D         E +  D  + + A + +    +S G   +  N +
Sbjct: 358 ERLLGRRIDVQRIDGFEERGSTDETLQADARRQSQAPRKHHARPRSDGRGEQSGNRA 414


>gi|73992237|ref|XP_534451.2| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX27
           (DEAD-box protein 27) isoform 1 [Canis familiaris]
          Length = 765

 Score =  184 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 157/465 (33%), Positives = 244/465 (52%), Gaps = 21/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 185 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 244

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++  +  N+T  L +GG+  ++Q   L 
Sbjct: 245 ERLIYKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALR 304

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 305 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 364

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   FV            +   L
Sbjct: 365 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAAL 424

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 425 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 484

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K +  
Sbjct: 485 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 544

Query: 360 IEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K  +                  K++ +  D+ ++     +    Q + A+ N      
Sbjct: 545 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQQSEAQINTAKRLL 604

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
                +   N+  ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 605 EREKGKEASNHEPERSWFQTKEERKKEKIAKALQEFD---LALRG 646


>gi|145219994|ref|YP_001130703.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206158|gb|ABP37201.1| ATP-dependent RNA helicase CsdA [Chlorobium phaeovibrioides DSM
           265]
          Length = 598

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 138/372 (37%), Positives = 224/372 (60%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L+  V+ A+ D GY  PTPIQ +TIPL+++  DV G AQTGTGKTA+F LP+L+
Sbjct: 11  SFTDLNLAEPVLRALADVGYETPTPIQARTIPLLIEGRDVLGQAQTGTGKTAAFALPILS 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++        P+ L+L PTRELA QVA+ F KY ++      L I  G  + +Q + L+
Sbjct: 71  NIDFSATE---PQVLVLAPTRELAIQVAEAFHKYAEHLKGFHVLPIYGGQEYGSQLRMLK 127

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  +G L +++++ LV+DEAD ML MGFI  ++ I    P  RQ 
Sbjct: 128 RGVHVVVGTPGRVMDHMRKGSLNLHSLKCLVLDEADEMLRMGFIDDVEWILEQTPSDRQV 187

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++++++ +L +P  + +   ++T +TI   +      +      +   + 
Sbjct: 188 ALFSATMPAPIRRIAQKYLNDPAEVTIQAKTTTVDTIRQRYWIVGGSHK---IDILTRIL 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +   L+ +G+S  A++G++ Q+ R + +   K G + +++
Sbjct: 245 EVEPFDGMIIFVRTKTMTLEIAEKLQARGYSAAALNGDMVQQQRERTIDQLKSGALNIVI 304

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G+A   V+  +   + +I
Sbjct: 305 ATDVAARGLDVERISHVINYDIPSDTESYVHRIGRTGRAGRSGEAILFVSPRERNMLSSI 364

Query: 361 EKLIEKKVDWLN 372
           E+   KK++ + 
Sbjct: 365 ERATRKKIELME 376


>gi|323485816|ref|ZP_08091151.1| ATP-dependent RNA helicase RhlE [Clostridium symbiosum WAL-14163]
 gi|323400804|gb|EGA93167.1| ATP-dependent RNA helicase RhlE [Clostridium symbiosum WAL-14163]
          Length = 458

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 172/442 (38%), Positives = 254/442 (57%), Gaps = 10/442 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F DL LSP ++ A+ + GYV P+PIQ K IP VL   DV G AQTGTGKTA+F LP++
Sbjct: 13  MNFKDLQLSPLLLKALEEKGYVSPSPIQEKAIPHVLAGRDVLGCAQTGTGKTAAFALPII 72

Query: 61  TILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L K   +     + R+LIL PTR+LA Q+A+NF++YG   ++  A++ GG+    Q +
Sbjct: 73  QNLMKPSEKKYSKRVIRSLILTPTRKLALQIAENFKEYGSRTSVRCAVIFGGVSANPQIE 132

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG D+L+ TPGR+ D   +G + +  +EI V+DEADRMLDMGFI  ++ I SL+P  
Sbjct: 133 ELRRGIDILVATPGRLNDLVGQGFVDLAYVEIFVLDEADRMLDMGFIHDVKKIISLLPVR 192

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTLLFSATM  E+Q +++  L NP R+EV   SST + I+        +  +   +   
Sbjct: 193 KQTLLFSATMPAEIQALTDKLLHNPARVEVTPVSSTVDIIDASLYYVDKENKRSLLVYLL 252

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              + + + + ++F   K     +   L K   S  AIHG+  Q +R   LS+FK G IQ
Sbjct: 253 ---NHEDITSTLVFTRTKHGADRVAKFLVKNRISAAAIHGDKSQGARQTALSHFKSGEIQ 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++  V NFD+PN  E YIHRIGRTGRAG  G+A +    E+  ++
Sbjct: 310 VLVATDIAARGIDIEELSCVINFDLPNIPETYIHRIGRTGRAGLDGRAISFSDIEEKAYV 369

Query: 358 DAIEKLIEKKVDWLNGDLSSLN----PPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
             IEKL  K +  ++     +     PP E         A+ +     K+    + KK  
Sbjct: 370 KDIEKLTGKAIPVVDTHPYPMAVFVVPPKETKPRPSRVTAKSSVKSQTKAQSGSQTKKRA 429

Query: 414 SSQKSHIPLKESEKISKLQQDI 435
           ++Q      K      KL++ +
Sbjct: 430 NTQSKTPAGKLVNPEKKLRRKV 451


>gi|296273966|ref|YP_003656597.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098140|gb|ADG94090.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 480

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 170/431 (39%), Positives = 258/431 (59%), Gaps = 10/431 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ A+ D GY+KP+PIQ + IP++L++HDV   AQTGTGKTA F LP+L
Sbjct: 1   MTFKELGLIEPLLKAIKDKGYIKPSPIQEQAIPIILEKHDVLAGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            IL K  +    P     IL PTRELAAQVA + + YGK   L  A++ GG+    Q   
Sbjct: 61  QILSKKESNNTKPEIRALILTPTRELAAQVAQSVDDYGKYLPLKTAVIFGGVGINPQKAL 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           + +G D++I TPGR+LDH  +  + ++++E  ++DEADRMLDMGFI  I+ + +L+P  R
Sbjct: 121 IRKGVDIVIATPGRLLDHIEQKTIDISHVEHFILDEADRMLDMGFIRDIRKVLALLPSHR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +DE++K+S+  L  PK IEV   ++++E +            K        
Sbjct: 181 QNLLFSATFSDEIKKLSDGILNKPKLIEVARRNTSSEMVSQVIHLVDKDRKKTLLSKL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F   K     L   LE  G +  AIHGN  Q +R K L++FK G +++
Sbjct: 239 -IKEGDWRQVLVFTRTKHGANKLSQQLEIDGITATAIHGNKSQGARTKALADFKAGAVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV NF++PN AE+Y+HRIGRTGRAG  G+A +LV  ++  ++ 
Sbjct: 298 LVATDIAARGIDIDQLPHVVNFELPNVAEDYVHRIGRTGRAGNEGQAVSLVCVDEHDYLK 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEKLI+  +  +  +   ++P ++   I+   +  +NN     S   +  KK +SS+K+
Sbjct: 358 GIEKLIKTSIKKVLIEGFEVDPSIKAEPISNGRNKGRNN-----SNSRNTPKKEFSSEKN 412

Query: 419 HIPLKESEKIS 429
               K+  + S
Sbjct: 413 RRRDKKPFRNS 423


>gi|320167743|gb|EFW44642.1| eIF4AIII protein [Capsaspora owczarzaki ATCC 30864]
          Length = 413

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 203/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA + L P+++  +   G+ +P+ IQ + I  +L+  DV   AQ+GTGKTA+F +  L 
Sbjct: 38  DFAQMNLKPELLQGIYAYGFEQPSAIQQRAIRPILKGRDVIAQAQSGTGKTATFSISALN 97

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +E      +    L+L PTRELA Q+       G    +     IGG+      KKL+ 
Sbjct: 98  CVEPATRETQA---LVLSPTRELAQQIQKVVLALGDYMGVQCHACIGGVSVAEDIKKLDY 154

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   NI++L++DEAD ML  GF   I +I   +P T Q +
Sbjct: 155 GQHVVSGTPGRVFDMIKRRHLRTRNIKMLILDEADEMLSRGFKEQIYDIYRYLPPTTQVV 214

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  E+ +++  F+ +P RI V     T E I+  F++   +  K   L       
Sbjct: 215 IVSATLPHEVLEITTKFMTDPIRILVKRDELTLEGIKQFFISVEREEWKFDTLCDL--YD 272

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IFCN ++ V  L   + K  F+V  +HG +DQ+ R  I+  F+ G  ++++ 
Sbjct: 273 TLIITQAVIFCNTRRKVEFLAEEMAKANFTVSHMHGEMDQKERDTIMKQFRSGATRVLIT 332

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  IE
Sbjct: 333 TDLWARGIDVQQVSLVINYDLPINRENYIHRIGRSGRFGRSGVAINFVTNDDVRTLRDIE 392

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ +
Sbjct: 393 QYYATQIEEMPMNVNDM 409


>gi|330967974|gb|EGH68234.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 629

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 179/493 (36%), Positives = 271/493 (54%), Gaps = 48/493 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L          R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPP----LEKIDIAQHNHAR-------KNN-- 397
            K + +IE++ ++K+   D +  D++++        E+ D+ +   AR       KNN  
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRKSRGARPARADGDKNNGG 417

Query: 398 ----------------------PIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDI 435
                                 P         R     S Q++  P    +   +   + 
Sbjct: 418 RRDKGKDKGKDKPAAAAATGERPARPPREKKPREGTPRSEQRAVQPSTPRQASDRAPDEF 477

Query: 436 QENDADSLGFRGN 448
           ++++ D+ G R +
Sbjct: 478 RDDEVDNFGNRAD 490


>gi|309792203|ref|ZP_07686675.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
           DG6]
 gi|308225744|gb|EFO79500.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
           DG6]
          Length = 523

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 158/394 (40%), Positives = 228/394 (57%), Gaps = 9/394 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++LGLS  ++  + D GY +PTPIQ + IP++L   DV   AQTGTGKTA+F LP++ 
Sbjct: 3   TFSELGLSEPILRVLGDLGYDEPTPIQEQAIPVMLSNSDVIAQAQTGTGKTAAFALPIVQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L       R+P+ LIL PTRELA QVA+   KYGK   ++VA + GG P   Q + LE+
Sbjct: 63  RLR----DERVPQALILAPTRELAMQVAEAIYKYGKGRRISVAPVYGGQPIYRQLRALEQ 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGRI+DH  RG L+++ I  +V+DEAD MLDMGF   I+ I    P  RQT 
Sbjct: 119 GVQVVVGTPGRIMDHMRRGTLVLDQISTVVLDEADEMLDMGFAEDIEFILQQTPQQRQTA 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +Q + + + ++ KRI +             +        ++       +  
Sbjct: 179 LFSATMPEAVQGLVQRYTRDAKRISIAAEQLATPRTRQTYYEVMP---REKLDALCRILD 235

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +T  + IIFC  +     L  SL+ +G+    +HG++ Q  R +++  F+EG  +L+VA
Sbjct: 236 VETPSSAIIFCRTRSEADALGESLQGRGYLSEVLHGDMSQAQRDRVMKRFREGQAELLVA 295

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIPDV HV N+DVPN  E Y+HRIGRTGRAGR G A TL+   + + +  IE
Sbjct: 296 TDVAARGLDIPDVTHVINYDVPNDPEAYVHRIGRTGRAGRTGLAITLITPRERRMLQIIE 355

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           +    ++      L SL     +   A  +  R+
Sbjct: 356 RASRSRIQR--QKLPSLADVAARRREAFRDALRE 387


>gi|228989414|ref|ZP_04149403.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides
           DSM 12442]
 gi|228770361|gb|EEM18936.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides
           DSM 12442]
          Length = 528

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 155/382 (40%), Positives = 230/382 (60%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L 
Sbjct: 3   TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+     ++ PTRELA QV +   K GK+  + +  + GG     Q + L++
Sbjct: 63  KVDTHKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTL
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+  P+ I+V     T   I+           KK   +   L  
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ---FYLEVQEKKKFDVLTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++K+D +N    +L+  LE
Sbjct: 357 QTTKRKIDRMNA--PTLDEALE 376


>gi|228995609|ref|ZP_04155275.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides
           Rock3-17]
 gi|228764181|gb|EEM13062.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides
           Rock3-17]
          Length = 536

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 155/382 (40%), Positives = 230/382 (60%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L 
Sbjct: 3   TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+     ++ PTRELA QV +   K GK+  + +  + GG     Q + L++
Sbjct: 63  KVDTHKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTL
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+  P+ I+V     T   I+           KK   +   L  
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ---FYLEVQEKKKFDVLTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++K+D +N    +L+  LE
Sbjct: 357 QTTKRKIDRMNA--PTLDEALE 376


>gi|325280488|ref|YP_004253030.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324312297|gb|ADY32850.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
           20712]
          Length = 432

 Score =  183 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 148/435 (34%), Positives = 236/435 (54%), Gaps = 14/435 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +S +++ A+ DAG+ +PTPIQ +  P++    DV GIAQTGTGKT ++++P+L
Sbjct: 1   MTFNELNISKQILMALEDAGFEQPTPIQERAFPVIRSGKDVIGIAQTGTGKTLAYLIPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +   PR L++ PTREL  QV ++ E   +  ++    + GG     Q   + 
Sbjct: 61  MKLHYA--QGNYPRALVIVPTRELVVQVCESVELLTEYMDIRCVGIYGGTNIRTQQAAVY 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGR +D +  G +    I+ +V+DEADR++DMGF+P +++I  +VP   QT
Sbjct: 119 EGVDLLVTTPGRFMDIYMNGIIRTPQIKTVVVDEADRLMDMGFMPQLRSILEVVPEKHQT 178

Query: 181 LLFSATMTDELQKVSENF-LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT +  + +++  F    P RIE   P++  E +           +K   L   L 
Sbjct: 179 LLFSATFSTTIAELAAEFLAPEPVRIETGNPTTPVELVTQLRYDLPNIQTKINLLKLLLT 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  +  I    +K     +    +     +  +H N  Q SR+  L  FKEG  ++M
Sbjct: 239 DKEEFRRVMIFTETKKNADRIVERLGDHWKGELSVLHSNKAQNSRLNALKVFKEGKTRIM 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V+SD+AARG+D+ DV HV NFD+P+  E YIHRIGRT RAG+ G A + V +++    + 
Sbjct: 299 VSSDVAARGIDVQDVSHVINFDIPSIPEEYIHRIGRTARAGKEGTAISFVTEKEEPKFEE 358

Query: 360 IEKLIEKKVDW--LNGDL--SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           IEKLI ++V+W  L  +L  S +    EK+  +   + +     P+    F  +    S+
Sbjct: 359 IEKLIGQQVEWAALPENLVISDVLLDDEKVQTSNIVYQKGK---PKGGGAFHAK----SA 411

Query: 416 QKSHIPLKESEKISK 430
           + S  P K  +  +K
Sbjct: 412 KNSKTPQKVRKDRTK 426


>gi|239624536|ref|ZP_04667567.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239520922|gb|EEQ60788.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
           bacterium 1_7_47FAA]
          Length = 518

 Score =  183 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 165/456 (36%), Positives = 251/456 (55%), Gaps = 14/456 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +L LSP ++ A+   GY+KP+PIQ + IP VL   D+ G AQTGTGKTA+F LP++
Sbjct: 1   MNFDELQLSPLLLKALDQKGYIKPSPIQEQAIPYVLNGQDLLGCAQTGTGKTAAFALPII 60

Query: 61  ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                  K R + +  R LIL PTRELA Q+ +N E+YG    +  A++ GG+  + Q +
Sbjct: 61  QNLMERPKNRQKKKPVRALILTPTRELALQIHENIEEYGAGTPINSAVIFGGVSAKPQIQ 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+L+ TPGR+LD   + ++ ++ +EI V+DEADRMLDMGFI  ++ + +L+P  
Sbjct: 121 SLRRGIDILVATPGRLLDLIGQHEIDLSFVEIFVLDEADRMLDMGFIHDVKRVITLLPKK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM DE+Q ++   L NP ++EV   SST + IE               +   
Sbjct: 181 RQTLLFSATMPDEIQALAAKLLHNPVKVEVTPVSSTVDLIETSLYYVDKANKWPLLVHLL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                + + + ++F   K         L K G +  AIHG+  Q +R   LSNFK G ++
Sbjct: 241 ---EHEDVSSTLVFTRTKHGADRGAKYLNKSGITAAAIHGDKSQGARQTALSNFKSGRLR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++  V NFD+PN  E Y+HRIGRTGRAG  G+A +    E+  ++
Sbjct: 298 VLVATDIAARGIDIEELSCVINFDLPNVPETYVHRIGRTGRAGLGGRAISFSDIEEKAYV 357

Query: 358 DAIEKLIEKKVDWL-----NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             IEKL  K +  +       ++  + P  E+         +       K +  D   K 
Sbjct: 358 KDIEKLTGKTIQVIGDHPYPMEVFEIAPKEERNSRQAKGAGKGAGSRRAKDSRRDTDSKR 417

Query: 413 YSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
            +  +     K+S + +  ++D     A    +  +
Sbjct: 418 ATDSRR---AKDSRRATDSRRDTDSKRATDSRWAAD 450


>gi|224826248|ref|ZP_03699350.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224601349|gb|EEG07530.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 456

 Score =  183 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 178/466 (38%), Positives = 272/466 (58%), Gaps = 21/466 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+LGLSP+++ A+ + GY +PTPIQ K IPLVL   D+   AQTGTGKTA+F+LP+L
Sbjct: 1   MSFAELGLSPEILRAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLPIL 60

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L+K  +    P        IL PTRELA Q+A N   Y K   L   ++ GG+  + Q
Sbjct: 61  ERLKKFASTSASPAMHPVRALILSPTRELADQIAVNAAAYTKYLPLRSTVVFGGMNMDPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L RG ++LI TPGR+LDH  +  + +N +++LV+DEADRMLDMGFI  I+ I  ++P
Sbjct: 121 TQELRRGVEILIATPGRLLDHVGQKTVQLNKVDVLVLDEADRMLDMGFINDIRKILGMLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            TRQTLLFSAT   E+++++E F+ +P+ +EV   +ST   +E    +  +Q  +     
Sbjct: 181 RTRQTLLFSATFAPEIKRLAEEFMHDPQTVEVARQNSTNAQVEQLVFSVDSQRKRYLLSH 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 +  M   I+FC  K +   L   L++ G +  AIHG+  Q +R++ L+ FK G 
Sbjct: 241 L---IRERQMGQVIVFCKTKLSADQLARDLKRDGHAAEAIHGDKAQGARLETLTAFKNGE 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGLDI ++ +V NF++PN  E+Y+HRIGRTGRAG  G A +L+ +++ K
Sbjct: 298 VKVLVATDVAARGLDISELPYVVNFELPNAPEDYVHRIGRTGRAGASGVAISLMGQDEGK 357

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNP-PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
            ++AIEKL  + +      +S   P  LE+        A +  P P++S    R     +
Sbjct: 358 QLEAIEKLTRQTLK--PQPVSGFWPSWLER-------PADEIAPPPRRSAENGRGNSRSA 408

Query: 415 SQKSHIPLKESEKISKLQQDIQEND--ADSLGFRG-NMPAFMLPKN 457
           S+        +E + K   + +        +G R   +PA +LP  
Sbjct: 409 SRAPVAAAPVAEPLRKPVDNGEPRKVFKARIGKRQREVPALLLPPR 454


>gi|229009737|ref|ZP_04166960.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM
           2048]
 gi|229055077|ref|ZP_04195508.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603]
 gi|228721261|gb|EEL72786.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603]
 gi|228751532|gb|EEM01335.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM
           2048]
          Length = 538

 Score =  183 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 158/382 (41%), Positives = 230/382 (60%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L 
Sbjct: 3   TFRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+     ++ PTRELA QV +   K GK+  + +  + GG     Q + L++
Sbjct: 63  KVDTNKEAVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTL
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+  P+ I+V     T   I+           KK   +   L  
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ---FYLEVQEKKKFDVLTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  IIF   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEGTI+++VA
Sbjct: 237 IQSPELAIIFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGTIEVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++KVD +  D  +L+  LE
Sbjct: 357 RTTKRKVDRM--DAPTLDEALE 376


>gi|289676388|ref|ZP_06497278.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas
           syringae pv. syringae FF5]
          Length = 435

 Score =  183 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 171/422 (40%), Positives = 252/422 (59%), Gaps = 17/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L          R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPP----LEKIDIAQHNHARKNNPIPQKSTGF 406
            K + +IE++ ++K+   D +  D++++        E+ D+     AR       K+ G 
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARGDGDKNNGG 417

Query: 407 DR 408
            R
Sbjct: 418 RR 419


>gi|257885750|ref|ZP_05665403.1| helicase [Enterococcus faecium 1,231,501]
 gi|257821606|gb|EEV48736.1| helicase [Enterococcus faecium 1,231,501]
          Length = 503

 Score =  183 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 152/384 (39%), Positives = 228/384 (59%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LSP+++ +V  AG+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKELELSPELLKSVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R  ++    L++ PTRELA Q  +   + G++  + V  + GG     Q + L+
Sbjct: 61  EKIDPDRHELQ---GLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  ++ LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F++NP  +++     TA+ I+  +V                  
Sbjct: 178 LLFSATMPPAIKNIGVKFMKNPHHVKIKAKEVTADLIDQYYVRAKEYEKFDIMTRL---F 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       +++L PP EK
Sbjct: 355 ENLTKKR-------MTTLRPPTEK 371


>gi|257896496|ref|ZP_05676149.1| helicase [Enterococcus faecium Com12]
 gi|257833061|gb|EEV59482.1| helicase [Enterococcus faecium Com12]
          Length = 503

 Score =  183 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 150/384 (39%), Positives = 227/384 (59%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LSP+++ +V  AG+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKELELSPELLKSVERAGFEEATPIQAETIPLALVGKDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R  ++    L++ PTRELA Q  +   + G++  + V  + GG     Q + L+
Sbjct: 61  EKIDPDRHELQ---GLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  ++ LV+DEAD ML+MGF+  I+ I   VP  RQT
Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIIFQVPDQRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F+++P  +++     TA+ I+  +V                  
Sbjct: 178 LLFSATMPPAIKNIGVKFMKSPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRL---F 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       +++L PP EK
Sbjct: 355 ENLTKKR-------MTTLRPPTEK 371


>gi|94498002|ref|ZP_01304566.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
 gi|94422585|gb|EAT07622.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
          Length = 459

 Score =  183 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 163/446 (36%), Positives = 240/446 (53%), Gaps = 15/446 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M+F DLGLS  ++ A+    Y  PTPIQ K IP++LQ HD+CGIAQTGTGKTA+F LP  
Sbjct: 1   MEFTDLGLSEPILKALSAKKYTAPTPIQQKAIPVLLQGHDLCGIAQTGTGKTAAFALPSL 60

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      VR  R L+L PTRELAAQ+A +F  YG+   L+V  + GG+P   Q K 
Sbjct: 61  DYFARNPKPTPVRGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVETVFGGVPINRQIKA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+++ TPGR+LD  ++    + + EI V+DEAD+M+DMGFI  ++ +  L+P  R
Sbjct: 121 LSQGVDIVVATPGRLLDLIDQRCFTIKDTEIFVLDEADQMMDMGFIHPLKRVAKLLPTDR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L FSATM  E++ ++  FL +P ++ V   S+TAE +            +       +
Sbjct: 181 QNLFFSATMPKEIEALAGQFLNDPVKVSVAPQSTTAERVRQQATFVNQAEKQAL---LHI 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   + +   +IF   K     +   LE  G    AIHGN  Q  R   L  F++G ++L
Sbjct: 238 VLETEDIDRALIFTRTKHGADRVVRFLEGAGIDAFAIHGNKSQGQRTTALQAFRQGKVKL 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  V HV NF++PN  E Y+HRIGRT RAG  G A + VA ++  ++ 
Sbjct: 298 LVATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGAEGVAISFVADDERPYLK 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           AIE+    K+D        + P  E    A  N  +        S    ++ K    Q+ 
Sbjct: 358 AIERATRVKLD--------VAPLPENFLEAVRNLPKPAPQRKGPSQSPSQQAKRAEGQRR 409

Query: 419 HIPLKESEKISKLQQDIQENDADSLG 444
           +   +++++           D D  G
Sbjct: 410 YQDQQKAQR--GTPDKAHRGDGDGTG 433


>gi|269838391|ref|YP_003320619.1| DEAD/DEAH box helicase domain-containing protein [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787654|gb|ACZ39797.1| DEAD/DEAH box helicase domain protein [Sphaerobacter thermophilus
           DSM 20745]
          Length = 526

 Score =  183 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 149/366 (40%), Positives = 220/366 (60%), Gaps = 6/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ A+   G+ +PTPIQ + IPL+L   D+   AQTGTGKTA+F LP++  
Sbjct: 4   FADLGLSEPVLKAIDAVGFEEPTPIQREAIPLLLSGRDLIAQAQTGTGKTAAFALPIIER 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    R   P+ L+L PTRELA QVA  F + G+  +  V  + GG P E Q + L   
Sbjct: 64  LQPNGRR---PQALVLAPTRELAVQVAQTFHQLGRVRDTRVLAVYGGQPIERQLRALRHP 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +V++ TPGR++DH  R  L ++N+  +VIDEAD MLDMGFI  ++ I   VP  RQT L
Sbjct: 121 VEVVVGTPGRVMDHIRRETLDLSNVSTVVIDEADEMLDMGFIEDVEWILDHVPAERQTAL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ D +  ++  +L++P R+ V     T   IE  +V       +        +   
Sbjct: 181 FSATIPDRVAALARRYLRDPARVAVEPERVTVPQIEQTYVEVVQ---RAKVEALTRILDM 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T  + IIFC  K+ V  L   L+  G++  A+HG++ Q  R ++++ F+ G  +L++A+
Sbjct: 238 ETPPSAIIFCRTKRGVDELTQQLQSLGYAAEALHGDLSQVQRDRVMARFRSGQAELLIAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A TLV   + + +  IE+
Sbjct: 298 DVAARGLDVEGITHVINYDIPGDPESYVHRIGRTGRAGRAGAAITLVTPRERRLLREIER 357

Query: 363 LIEKKV 368
               ++
Sbjct: 358 ATGVRM 363


>gi|315641802|ref|ZP_07896806.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
 gi|315482477|gb|EFU73016.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
          Length = 522

 Score =  183 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 156/384 (40%), Positives = 230/384 (59%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LSP+++ AV  +G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKELELSPELLKAVERSGFEEATPIQSETIPLALSGRDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++         + L++ PTRELA Q  +   + GK+  + V  + GG     Q ++L+
Sbjct: 61  EKIDTS---SSHLQGLVISPTRELAIQTQEELYRLGKDKKVRVMAVYGGADIGRQIRQLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  +E LV+DEAD ML+MGF+  I++I S VP TRQT
Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLETVETLVLDEADEMLNMGFLEDIESIISKVPSTRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F+QNP+ +++     TA+ I+  +V +                
Sbjct: 178 LLFSATMPPAIKSIGVKFMQNPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLL--- 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  IIF   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 235 DVQTPELTIIFGRTKRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMSYLHTI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       ++ L PP EK
Sbjct: 355 ENLTKKR-------MTPLRPPTEK 371


>gi|189347343|ref|YP_001943872.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245]
 gi|189341490|gb|ACD90893.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245]
          Length = 610

 Score =  183 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 138/373 (36%), Positives = 228/373 (61%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F++L L+  ++ A+ + GY KPTPIQ +TIPL+L+  DV G AQTGTGKTA+F LP+L
Sbjct: 24  LNFSNLELAEPLLRALEEVGYEKPTPIQAQTIPLLLEGRDVLGQAQTGTGKTAAFALPVL 83

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + +   +     P+ L+L PTRELA QVA+ F +Y +       + I  G  +  Q + L
Sbjct: 84  SNIVLSKTE---PQALVLTPTRELAIQVAEAFHRYAEYLKGFHVVPIYGGQDYGTQLRML 140

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGR++DH  RG L +++++ LV+DEAD ML MGFI  ++ I    P +RQ
Sbjct: 141 KRGVHVVVGTPGRVMDHMRRGSLSLSSLQCLVLDEADEMLRMGFIDDVEWILDQTPESRQ 200

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   ++++++  L++P  + +   ++T ETI   +      +           
Sbjct: 201 VALFSATMPAPIRRIAQKHLKSPAEVIIQNKTTTVETIRQRYWIVGGSHKLDVLTRILEF 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D +   +IF   K   + L   L+ +G++  A++G++ Q  R + +   K+G++ ++
Sbjct: 261 EPFDGI---LIFVRTKTMTLELAEKLQARGYAASALNGDMAQNQRERTVDQLKDGSLSIV 317

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G+A   V+  +   + A
Sbjct: 318 IATDVAARGLDVDRISHVINYDIPSDTESYVHRIGRTGRAGRSGEAILFVSPREKNMLYA 377

Query: 360 IEKLIEKKVDWLN 372
           IEK   K+++ + 
Sbjct: 378 IEKATRKRIELME 390


>gi|307293134|ref|ZP_07572980.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306881200|gb|EFN12416.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 460

 Score =  183 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 155/446 (34%), Positives = 237/446 (53%), Gaps = 5/446 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F DLGL+  ++ A+    Y  PTPIQ + IP++L+  D+CGIAQTGTGKTA+F LP  
Sbjct: 1   MQFTDLGLAEPILRALAAKKYGSPTPIQAQAIPMLLKGKDLCGIAQTGTGKTAAFALPSL 60

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      ++  R L+L PTRELAAQ+A +F  YG+   L+V ++ GG+P   Q + 
Sbjct: 61  DHFARNPKPTPLQGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVEVVFGGVPINRQIRT 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+++ TPGR+LD  ++    + + EI V+DEAD+M+DMGFI  ++ I  L+P  R
Sbjct: 121 LGRGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPKER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L FSATM  E++ ++  FL +P ++ V   S+TAE +            +       L
Sbjct: 181 QNLFFSATMPGEIEALAAQFLHDPVKVSVAPQSTTAERVRQQATFVNQMEKQAL---LNL 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               + +   +IF   K     +   LE  G    AIHGN  Q  R   L  F+ G ++L
Sbjct: 238 TIRNEDIDRALIFTRTKHGADRVVRFLEGAGIQAVAIHGNKSQAQRTTALQAFRHGHVKL 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  V HV NF++PN  E Y+HRIGRT RAG  G A + VA ++  ++ 
Sbjct: 298 LVATDIAARGIDVSGVSHVINFELPNVPEQYVHRIGRTARAGAEGIAISFVADDERPYLK 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           AIE+  + K+D +    + +         A     R+  P  +      +R+     ++ 
Sbjct: 358 AIERTTKVKLDVVPLPENFVEAVRNLPKAAPQRKGREQTPEQKVRRADGQRRYQDQQKQQ 417

Query: 419 HIPLKESEKISKLQQDIQENDADSLG 444
               + + +        ++N     G
Sbjct: 418 RGNAERAHRPDGEAAPAKKNFRRRRG 443


>gi|160874026|ref|YP_001553342.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|160859548|gb|ABX48082.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
          Length = 525

 Score =  183 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 178/466 (38%), Positives = 262/466 (56%), Gaps = 8/466 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ + IP VLQ  DV   AQTGTGKTA F LPML
Sbjct: 12  MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 71

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   +    R L+L PTRELAAQVA++ E YGKN  L  A++ GG+P   Q  KL
Sbjct: 72  ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 131

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 132 RHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 191

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++++++  + NP  I V   ++ A T++               +     
Sbjct: 192 NLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQL--- 248

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  +  ++F   K     L  SLE  G    AIHGN  Q +R K L++FK G  +++
Sbjct: 249 IKQNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVL 308

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+IK ++ 
Sbjct: 309 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLND 368

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+LI + +D     +   N  L +  +     +   +   +++T    +  +       
Sbjct: 369 IERLINRVLDR--EMVEGFNHVLPESRLGGGGKSSGKSVPSRRNTRSSNQPSSRDGAPRS 426

Query: 420 IPLKESEKISKLQQDIQENDADSL--GFRGNMPAFMLPKNRGKLND 463
              K+ ++   + +  + ND +    G   + P         + ND
Sbjct: 427 AEHKDGQRSGDVARGHKPNDKNPRHSGEASSAPRADAKPRPPRSND 472


>gi|315266257|gb|ADT93110.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 514

 Score =  183 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 178/466 (38%), Positives = 262/466 (56%), Gaps = 8/466 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ + IP VLQ  DV   AQTGTGKTA F LPML
Sbjct: 1   MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   +    R L+L PTRELAAQVA++ E YGKN  L  A++ GG+P   Q  KL
Sbjct: 61  ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 RHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++++++  + NP  I V   ++ A T++               +     
Sbjct: 181 NLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  +  ++F   K     L  SLE  G    AIHGN  Q +R K L++FK G  +++
Sbjct: 238 IKQNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+IK ++ 
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLND 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+LI + +D     +   N  L +  +     +   +   +++T    +  +       
Sbjct: 358 IERLINRVLDR--EMVEGFNHVLPESRLGGGGKSSGKSVPSRRNTRSSNQPSSRDGAPRS 415

Query: 420 IPLKESEKISKLQQDIQENDADSL--GFRGNMPAFMLPKNRGKLND 463
              K+ ++   + +  + ND +    G   + P         + ND
Sbjct: 416 AEHKDGQRSGDVARGHKPNDKNPRHSGEASSAPRADAKPRPPRSND 461


>gi|116327340|ref|YP_797060.1| superfamily II DNA/RNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116332045|ref|YP_801763.1| superfamily II DNA/RNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120084|gb|ABJ78127.1| Superfamily II DNA and RNA helicase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116125734|gb|ABJ77005.1| Superfamily II DNA and RNA helicase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 549

 Score =  183 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 160/456 (35%), Positives = 254/456 (55%), Gaps = 24/456 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L PK++ A+ + GY + TPIQ K+IP  L+  D+ G+AQTGTGKT +F++P++
Sbjct: 1   MKFEELSLHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDIIGLAQTGTGKTVAFLIPVV 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             +      ++    L+L PTREL  Q+AD  +K  K+ +   A+ I  G  +++QNK L
Sbjct: 61  HTILTKN--IQKVSALVLAPTRELTIQIADEAKKLLKHSDGIRAVPIIGGTDYKSQNKDL 118

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E    +++ TPGR++D    G + ++N+E  V+DEADRMLDMGFI  I+ +       +Q
Sbjct: 119 EGLNGIIVATPGRLIDMVKSGSIDISNVEFFVLDEADRMLDMGFIQDIRWLLHKCKNRKQ 178

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT++ E+ +++  FL  P  I++N      E         +    +K   +  L+
Sbjct: 179 TLLFSATLSVEVMRLAYRFLNEPVEIQINPEKIITER--IDQKIVHLGREEKIPYMTNLI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +      GIIF N K N+  + ++L K G  +  I   +DQ+ R+++L +FK G  + M
Sbjct: 237 VNSKDEGQGIIFTNYKANIPKIVYTLRKYGIPITGISSELDQKKRLRLLRDFKSGKYRYM 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RG+D+ ++  V+N+D+P   ENY+HRIGRT RAGR GKA    ++ D   ++ 
Sbjct: 297 VATDVASRGIDVENIDIVYNYDLPQDTENYVHRIGRTARAGRMGKAIGFCSESDYVELEK 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK---------IDIAQHNHARKNNPIPQKST------ 404
           IEK +++K++ L  +   +  P  K          D  +  H ++N   P          
Sbjct: 357 IEKYLKQKIEILEVNEEYIQFPTGKFPPFIGGDSYDREKEVHFKQNGRRPHDRGDRAPHK 416

Query: 405 -GFDRR--KKNYSSQKSHIPLKESEKISKLQQDIQE 437
              DRR  K++ S   SH P ++S K  K    IQE
Sbjct: 417 HDRDRRGDKRHTSHIHSHSPTRDSHK-KKPAAAIQE 451


>gi|330817865|ref|YP_004361570.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
 gi|327370258|gb|AEA61614.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
          Length = 485

 Score =  183 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 172/474 (36%), Positives = 254/474 (53%), Gaps = 21/474 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+P ++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAPDILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N   Y K+  L  A++ GG+   +Q 
Sbjct: 72  RLLPQANSSASPARHPVRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNSQM 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  +++LV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L NP+ IEV   ++TA  +            +   +  
Sbjct: 192 QRQTLLFSATFSPEIKKLASTYLSNPQTIEVARSNATATNVTQVVYEIAEGDKQAAVVKL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                  ++K  I+FCN K     L   LE+ G    AIHG+  Q  RM+ L  FK G +
Sbjct: 252 ---IRDRSLKQVIVFCNSKIGASRLARQLERDGVVATAIHGDRSQNERMQALDAFKRGEV 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKKVDWLNGDLSS-LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           +  IEKLI++ +      + + +    E+ + ++ +  R  +  P++S G    + ++  
Sbjct: 369 LADIEKLIKRDLPLQPLAVDAPVRARQERGERSERSRDRDESRGPRRSHGHGGERTHHHH 428

Query: 416 QKSHIPLKE------------SEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
            +   P+ E             E     +Q               +  F +P+ 
Sbjct: 429 SRREAPVDEFFLKPYEPSPSAREPEEATKQPASSEKKSKQPLAALLGGFGMPRR 482


>gi|156934713|ref|YP_001438629.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156532967|gb|ABU77793.1| hypothetical protein ESA_02548 [Cronobacter sakazakii ATCC BAA-894]
          Length = 474

 Score =  183 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 171/469 (36%), Positives = 259/469 (55%), Gaps = 13/469 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP+++ A+ + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQV +N  +Y K  ++   ++ GG+    Q  
Sbjct: 61  QRLTANQPHPKGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVLI TPGR+LD  ++  + ++ +E+LV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLIATPGRLLDLEHQNAVKLDQVEVLVLDEADRMLDMGFIHDIRRVLAKLPPK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP+ +EV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKSLAEKLLHNPEEVEVARRNTASEQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L      +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK G I+
Sbjct: 238 YLIGDGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
             IE+L+++++  +   G     + P E I   + +   +             R++N   
Sbjct: 358 RDIERLLKREIPRMAIPGYEPDPSIPAEPIVNGRQSRGGRGGQGGGGRGQGQPRRQNGEG 417

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFR-----GNMPAFMLPKNRG 459
            +S             +QD + N       R     GN PA   P+ R 
Sbjct: 418 NRSSGERSRPAGERGRRQDGEGNRPSGERSRRPAGEGNRPAGNKPRTRR 466


>gi|78224236|ref|YP_385983.1| DEAD/DEAH box helicase-like [Geobacter metallireducens GS-15]
 gi|78195491|gb|ABB33258.1| DEAD/DEAH box helicase-like protein [Geobacter metallireducens
           GS-15]
          Length = 452

 Score =  183 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 159/412 (38%), Positives = 235/412 (57%), Gaps = 3/412 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+L L P ++ AV   GY  PTPIQ + IP  L+  D+   AQTGTGKTA+FVLP L
Sbjct: 1   MTFAELNLLPPILKAVAACGYTDPTPIQAQAIPRALEGRDLLATAQTGTGKTAAFVLPAL 60

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +   +  R PR L+L PTRELA QV D    YGK   +    ++GG+P+  Q + L
Sbjct: 61  QRLARPAQKPGRGPRVLVLTPTRELAQQVTDAVRSYGKFLRIRSGAILGGMPYREQLRLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR++D  +R  L ++ +E+L++DEADRMLDMGF   +  + +  P  RQ
Sbjct: 121 SAPVDLIVATPGRLVDLLDRRSLDLSRLELLILDEADRMLDMGFSDDVDRVAAASPSDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLF+ATM   + +++   L  P+RIEV    +T E IE           K    L Q L
Sbjct: 181 TLLFTATMDATMARLAGRLLNEPERIEVAGTKTTHEHIEQRLHVADDLSHKNR--LLQHL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +   ++  IIF   K++  N+   L  QG S  A+HG++ Q +R + ++  K+G I+L+
Sbjct: 239 ITDGDVRKAIIFSATKRDAENMAIELRSQGHSAAALHGDMPQSARNRTIAAMKQGRIRLL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV NFD+P  AE+Y+HRIGRTGRAG  G A +  +  ++ ++  
Sbjct: 299 VATDVAARGLDVSGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVSYLAR 358

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           IE+ I + +            PL ++   + +    +   P+KS G     K
Sbjct: 359 IERYIGQTLPEHQIPGLEPRRPLHRVSTGRGSRPGNSTGGPRKSYGNRDAAK 410


>gi|163750900|ref|ZP_02158133.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161329324|gb|EDQ00321.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 492

 Score =  183 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 172/449 (38%), Positives = 264/449 (58%), Gaps = 10/449 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  PTPIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 14  MSFTSLGLSAPILKAVANKGYETPTPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 73

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +G   + +  R L+L PTRELAAQVA++ + YGK   L  A++ GG+    Q  KL
Sbjct: 74  ELLSRGNRAQAKKVRALVLTPTRELAAQVAESVDTYGKYLPLKSAVVFGGVGIGPQISKL 133

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD +N+G +  N +E+LV+DEADRMLDMGFI  I+ I   +P  RQ
Sbjct: 134 GKGVDILVATPGRLLDLYNQGAVNFNQLEVLVLDEADRMLDMGFIHDIKKILRALPAKRQ 193

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +D+++K+++  + NP  I V   ++TA+++E           K+       L
Sbjct: 194 NLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATAKSVEQYIYMVDQ---KQKTAALIHL 250

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  +  ++F   K     +  +LE +  +  AIHGN  Q +R K L+NFK G ++++
Sbjct: 251 IKQNDWQQVLVFSRTKHGANRIAKNLEAKDITAAAIHGNKSQGARTKALANFKSGLVRVL 310

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + +V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ ++ K +  
Sbjct: 311 VATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSADESKLLRD 370

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR------KKNY 413
           IE+LI+K +     +       + + D+    H +   P      G  R        ++ 
Sbjct: 371 IERLIKKNIPRKEVEGFVPTQVVAETDLNDRKHGQNRGPRNANDRGNGRNGNSGSRSRDS 430

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADS 442
            S +  +  K+ ++  +  +  Q ND+++
Sbjct: 431 RSSQGKVEHKDGQRSGEAARGHQPNDSNA 459


>gi|164655646|ref|XP_001728952.1| hypothetical protein MGL_3946 [Malassezia globosa CBS 7966]
 gi|159102840|gb|EDP41738.1| hypothetical protein MGL_3946 [Malassezia globosa CBS 7966]
          Length = 396

 Score =  183 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 128/377 (33%), Positives = 201/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL   ++  +    + KP+ IQ + I  +L+  DV   AQ+GTGKTA+F + ML 
Sbjct: 24  TFDSLGLKDDLLRGIYAYNFEKPSAIQQRAILPILRGRDVIAQAQSGTGKTATFSIAMLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++      +    L+L PTRELA Q+       G   N+     IGG       +KLE 
Sbjct: 84  TIDISLRETQA---LVLSPTRELATQIQSVVLALGDYMNVQCHACIGGTSVGEDIRKLEY 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L   NI++L++DE+D +L+MGF   I +I   +P   Q +
Sbjct: 141 GQHIVSGTPGRVFDMIRRRHLRTKNIKMLIMDESDELLNMGFKDQIYDIYRYLPPATQVV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  ++ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 201 LVSATLPHDVLEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDL--YD 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F V ++HG + Q+ R  I+  F++G  ++++ 
Sbjct: 259 TLTITQAVIFCNTRRKVDWLTDRMRENNFQVSSMHGEMQQKERDAIMGEFRQGGSRVLIT 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+ +V  V N+D+P   ENYIHRIGR+GR GR G A   V  ED+K +  IE
Sbjct: 319 TDVWARGIDVQNVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTTEDVKILRDIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +   +  L
Sbjct: 379 QYYSTQIDEMPMKIDDL 395


>gi|329956784|ref|ZP_08297353.1| ATP-dependent RNA helicase RhlE [Bacteroides clarus YIT 12056]
 gi|328523823|gb|EGF50910.1| ATP-dependent RNA helicase RhlE [Bacteroides clarus YIT 12056]
          Length = 372

 Score =  183 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 149/368 (40%), Positives = 224/368 (60%), Gaps = 3/368 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL ++  ++ A+ + GY  PTPIQ+K IP  L   D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFKDLNITEPILKAIEEKGYTSPTPIQVKAIPAALTGKDILGCAQTGTGKTAAFAIPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+ G+ R +  + LIL PTRELA Q+++  + Y K   +   ++ GG+   AQ   L 
Sbjct: 61  QHLQAGKERDKSIKALILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRAQVNMLH 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+LD  N+G + ++++   V+DEADRMLDMGFI  I+ +   +P  +QT
Sbjct: 121 KGVDILVATPGRLLDLMNQGYIRLDSVRHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM D +  ++ + L+ P +I +   SST +TI       Y    K+ + L   + 
Sbjct: 181 LFFSATMPDTIIALTNSLLKQPVKIAITPKSSTVDTI---EQTVYFVEKKEKSKLLISIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   ++ ++F   K N   +   L K G    AIHGN  Q +R   L NFK G I++M+
Sbjct: 238 HKAEGQSVLVFSRTKHNADRIVRVLSKAGIGSQAIHGNKSQNARQSALENFKTGKIRVMI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A T  ++E+ K +  I
Sbjct: 298 ATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNSGTALTFCSQEERKLVSDI 357

Query: 361 EKLIEKKV 368
           +KL  KK+
Sbjct: 358 QKLTGKKL 365


>gi|152999406|ref|YP_001365087.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151364024|gb|ABS07024.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 525

 Score =  183 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 184/463 (39%), Positives = 259/463 (55%), Gaps = 18/463 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ + IP VLQ  DV   AQTGTGKTA F LPML
Sbjct: 12  MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 71

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   +    R L+L PTRELAAQVA++ E YGKN  L  A++ GG+P   Q  KL
Sbjct: 72  ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 131

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 132 RHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 191

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++++++  + NP  I V   ++ A T++               +     
Sbjct: 192 NLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQL--- 248

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  +  ++F   K     L  SLE  G    AIHGN  Q +R K L++FK G  +++
Sbjct: 249 IKQNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVL 308

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+IK ++ 
Sbjct: 309 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLND 368

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKIDIAQHNHARKNNPI---PQKSTGFDRRKK 411
           IE+LI + +D       N  L             +   +R+N      P    G  R  +
Sbjct: 369 IERLINRVLDREMVEGFNHVLPESRLGGGGRSSGKPVPSRRNTRSSNQPSSRDGAPRSAE 428

Query: 412 NYSSQKS------HIPLKESEKISKLQQDIQENDADSLGFRGN 448
           +   Q+S      H P  ++ + S        +DA     R N
Sbjct: 429 HKDGQRSGDVARGHKPNDKNPRHSGEASSAPRSDAKPRPPRSN 471


>gi|253997010|ref|YP_003049074.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera
           mobilis JLW8]
 gi|253983689|gb|ACT48547.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8]
          Length = 502

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 180/481 (37%), Positives = 267/481 (55%), Gaps = 30/481 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLS  ++ A+ DAGY  PTPIQ   IPLVL   D+   AQTGTGKTA F LP+L 
Sbjct: 10  TFDSLGLSEPILRAINDAGYSAPTPIQANAIPLVLSGGDLLAGAQTGTGKTAGFTLPILH 69

Query: 62  ---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 +  A    PR L+L PTRELAAQ+ ++ + YGK+  LT  ++ GG+    Q  +
Sbjct: 70  LLSKKPRAEAAASRPRCLMLSPTRELAAQIEESVKTYGKHLPLTSTVIFGGVNANPQIAR 129

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++  D+L+ TPGR+LDH N+  + ++ IEILV+DEADRMLDMGFI  I+ I +++P  R
Sbjct: 130 LKKPLDILVATPGRLLDHANQKNVDLSGIEILVLDEADRMLDMGFIRDIKKILAILPKQR 189

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT ++E++ +++  L NP  +EV   ++ +E +E         + +        
Sbjct: 190 QNLLFSATFSEEIKALADGLLHNPGFVEVARRNTASELVEQTVHMVPQAHKRDLVTHL-- 247

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  K  ++F   K     L   L K      AIHGN  Q +R K L+ FK+G++++
Sbjct: 248 -IKHHDWKQVLVFTRTKHGANRLAEKLIKDDIQAAAIHGNKSQGARTKALAQFKDGSMRV 306

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV +E+IK + 
Sbjct: 307 LVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSSGAAVSLVDREEIKLLK 366

Query: 359 AIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNP-------IPQKSTGFDRR 409
            IEKLI++++    + G   + NP  E     +    ++  P        P K+      
Sbjct: 367 DIEKLIKREIPRVSVEGFTPAANPEPEAPRAPRPQQGQRRKPQENSKQATPAKNNAAAPS 426

Query: 410 KKNYSSQ----KSHIPLKESEKISKLQQDI----QENDADSLGFRGNMPAFMLPKNRGKL 461
           ++   SQ    +S  P+ E+ +   + Q      Q  +++  G RGN        NRG++
Sbjct: 427 QQAKRSQPAQPRSQKPMSEAARHQAMPQSALFSPQPTNSNQRGNRGN-------SNRGQV 479

Query: 462 N 462
            
Sbjct: 480 A 480


>gi|227550862|ref|ZP_03980911.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
           TX1330]
 gi|257887886|ref|ZP_05667539.1| helicase [Enterococcus faecium 1,141,733]
 gi|257893315|ref|ZP_05672968.1| helicase [Enterococcus faecium 1,231,408]
 gi|293379275|ref|ZP_06625421.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
 gi|227179960|gb|EEI60932.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
           TX1330]
 gi|257823940|gb|EEV50872.1| helicase [Enterococcus faecium 1,141,733]
 gi|257829694|gb|EEV56301.1| helicase [Enterococcus faecium 1,231,408]
 gi|292642071|gb|EFF60235.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
          Length = 503

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 151/384 (39%), Positives = 228/384 (59%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LSP+++ +V  AG+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKELELSPELLKSVERAGFEEATPIQAETIPLALVGKDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R  ++    L++ PTRELA Q  +   + G++  + V  + GG     Q + L+
Sbjct: 61  EKIDPDRHELQ---GLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  ++ LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F+++P  +++     TA+ I+  +V                  
Sbjct: 178 LLFSATMPPAIKNIGVKFMKSPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRL---F 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       +++L PP EK
Sbjct: 355 ENLTKKR-------MTTLRPPTEK 371


>gi|229083524|ref|ZP_04215862.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44]
 gi|228699778|gb|EEL52425.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44]
          Length = 527

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 155/382 (40%), Positives = 230/382 (60%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L 
Sbjct: 3   TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+     ++ PTRELA QV +   K GK+  + +  + GG     Q + L++
Sbjct: 63  KVDTHKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTL
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+  P+ I+V     T   I+           KK   +   L  
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ---FYLEVQEKKKFDVLTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++K+D +N    +L+  LE
Sbjct: 357 RTTKRKMDRMNA--PTLDEALE 376


>gi|225719342|gb|ACO15517.1| Eukaryotic initiation factor 4A-III [Caligus clemensi]
          Length = 403

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 128/377 (33%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ ++I  +L+  DV   AQ+GTGKTA+F + +L 
Sbjct: 31  TFDSMGLREDLLRGIYAYGFEKPSAIQQRSIKPILKGRDVIAQAQSGTGKTATFSISILQ 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++      +    L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 91  SIDTSLRETQC---LVLSPTRELAVQIQKVLLALGDYMNVQCHACIGGTNLGEDIRKLDY 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q  
Sbjct: 148 GQHVVSGTPGRVYDMIRRRTLRTRGIKMLVLDEADEMLNKGFKEQIYDVYRYLPPFTQIC 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 208 LISATLPHEILEMTSKFMADPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  ++++ 
Sbjct: 266 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGQSRVLIT 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 326 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRDIE 385

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 386 QYYSTQIDEMPMNVADL 402


>gi|329906289|ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547309|gb|EGF32148.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
          Length = 504

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 166/391 (42%), Positives = 233/391 (59%), Gaps = 9/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D GLS +++ A+ D GY  PTPIQ   IP+VLQ  DV G AQTGTGKTA F LP++
Sbjct: 16  LRFEDFGLSAEILRALADQGYDHPTPIQAAAIPVVLQGRDVMGAAQTGTGKTAGFSLPII 75

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +L    +    P        IL PTRELA QVA+N + Y ++  L   ++ GG+    Q
Sbjct: 76  QLLLANASNSASPARHPVRALILTPTRELADQVAENVKAYCRHTPLRSTVVFGGMDMAPQ 135

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G +++I TPGR+LDH  +  L ++  +ILV+DEADRMLDMGF+P +Q I +L+P
Sbjct: 136 TAALRAGVEIVIATPGRLLDHVQQKTLNLSQTQILVMDEADRMLDMGFLPDLQRIINLLP 195

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ L+FSAT + E++K++ +FL NP  IEV   + TA+ +        +  +K+   +
Sbjct: 196 KKRQNLMFSATFSGEIKKLASSFLDNPVTIEVARSNQTADRVTQVVYKVDSDDAKRD--I 253

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L     +K  ++F N K     L   LEK G    AIHG+  Q  RM  L  FK G 
Sbjct: 254 VAHLIRGRQLKQVLVFSNTKIGASRLARELEKGGVKASAIHGDKTQSERMAALEAFKGGE 313

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+AARGLDI D+  V N+D+P  AE+Y+HRIGRTGRAG  G A +L   +D +
Sbjct: 314 IDVLVATDVAARGLDISDLPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFTTKDER 373

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
            +  IEKLI  K  ++  +L    PP+E+ +
Sbjct: 374 LLLDIEKLINHK--FVPAELVGYTPPVERAE 402


>gi|323706324|ref|ZP_08117890.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534376|gb|EGB24161.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 513

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 139/383 (36%), Positives = 225/383 (58%), Gaps = 7/383 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF +L L+ K++ A+ D G+ +P+ IQ + IP++L+  DV G A+TGTGKT ++  P++
Sbjct: 1   MDFKELHLNEKILKAIDDMGFEEPSKIQSEVIPVLLEGLDVIGQAETGTGKTLAYGAPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                   +V     L+L PTRELA QV D   + GK   + +  + GG+  + Q K ++
Sbjct: 61  NNFSSNDGKVF---CLVLTPTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDRQIKAIK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+++ TPGR+LD   R  L + ++  LVIDEAD M+DMGFI  I+ I +     RQT
Sbjct: 118 RGVDIVVGTPGRVLDLIKRNVLDLKSVRYLVIDEADEMMDMGFIDDIKEIINHTNKERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSATM DE++ +++ ++++  +       +   +    F        +  +L +  + 
Sbjct: 178 MMFSATMPDEIKNLAKKYMKSDAKFISIVKKTMTVSTVQHFYYEVKNQERFESLCR--IL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +   + IIFC  KK V  L  +++ +G++V  +HG++ Q  R+  L  FKEG +  +V
Sbjct: 236 DVEEPSSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGILDFLV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI +V HV N+++P   E+Y+HRIGRTGRA R G A+TLV   +   +  I
Sbjct: 296 ATDVAARGIDIENVTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYPALKRI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           EK    K+     +L +++  LE
Sbjct: 356 EKATRCKIKR--KELPTVDDILE 376


>gi|158321361|ref|YP_001513868.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           oremlandii OhILAs]
 gi|158141560|gb|ABW19872.1| DEAD/DEAH box helicase domain protein [Alkaliphilus oremlandii
           OhILAs]
          Length = 461

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 152/444 (34%), Positives = 241/444 (54%), Gaps = 10/444 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+  ++V  +   G V+PTPIQ ++IP+ LQ  D+   AQTGTGKT +F+LP+L 
Sbjct: 4   EFLNLGIIEEIVEPLRAEGIVEPTPIQRESIPVALQGKDIIAQAQTGTGKTFAFMLPILQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + K +  V+    LIL PTRELA Q+    +K  K  ++ V  + GG   E Q  KL+ 
Sbjct: 64  KINKNQKDVQA---LILAPTRELALQITTEAKKIAKGLDVNVLAVYGGQDVEKQIHKLKG 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+I TPGR+LDH  RG + +  +  LV+DEAD+ML MGF+  ++ I    P  RQ +
Sbjct: 121 GMHVVIATPGRLLDHLRRGTMHLKAVNQLVLDEADQMLTMGFLEEVEYIIKKTPQNRQLM 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT+   ++ ++  +++NP  I +++   T + I            +        +  
Sbjct: 181 LYSATIPKGIRALTNRYMKNPVEIRIHSNKVTLDEI---KQLVVETTDRHKQEALMHMIK 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q+     I+FC  K+ V  L  +L ++GFS   +HG++ Q  R K++  F+   +Q++VA
Sbjct: 238 QENPFLAIVFCRTKRRVKTLSDALIEKGFSCDELHGDMTQAKREKVMKEFRNAKLQILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+  + HVFN+D+P   E YIHRIGRTGRAG  G A T  A +D   +  IE
Sbjct: 298 TDVAARGIDVEGITHVFNYDIPQDVEGYIHRIGRTGRAGDKGMAITFAAPKDRDSLAMIE 357

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF-DRRKKNYSSQKSHI 420
           + I +K+  +          +E I+      A+K      K   F D ++KN     +  
Sbjct: 358 RGINQKIVKITFKPEG---RVESIEETFEREAKKREERKNKDNKFKDNQRKNGDKNSAKG 414

Query: 421 PLKESEKISKLQQDIQENDADSLG 444
              ES++    + D  ++  +  G
Sbjct: 415 RKTESKRYDSNKNDKNDSKGNRSG 438


>gi|77461504|ref|YP_351011.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1]
 gi|77385507|gb|ABA77020.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 622

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 168/408 (41%), Positives = 246/408 (60%), Gaps = 17/408 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGLS  +V A+ DAGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+ 
Sbjct: 1   MSFASLGLSEALVRAIEDAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 60  ------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                     +  R   R PR L+L PTRELAAQV D+F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKIYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRAL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   L+K G    AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPP----LEKIDIAQHNHAR 394
            K + +IE++ ++K+   D +  D S++        E+ D+    +AR
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDMRNPRNAR 405


>gi|81429227|ref|YP_396228.1| putative ATP-dependent RNA helicase [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78610870|emb|CAI55922.1| Putative ATP-dependent RNA helicase [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 530

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 153/405 (37%), Positives = 242/405 (59%), Gaps = 19/405 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+  AG+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLSEPIMKAISRAGFEEATPIQGETIPLALAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+     ++    LI+ PTRELA Q  +   + G++    V ++ GG     Q + L+
Sbjct: 61  QNLDLDNPDIQ---ALIISPTRELAIQTQEELYRLGRDRKAKVQVVYGGADIRRQIRSLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LDH NR  + +++++ LV+DEAD MLDMGF+  I++I   VP  RQT
Sbjct: 118 DHPQILVGTPGRLLDHINRRTVKLDHVKTLVLDEADEMLDMGFVDDIESIIKQVPEKRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+   + K+ ++F+ NP+ I+V +   TA+ I+  +V                  
Sbjct: 178 LLFSATLPAPIMKIGKSFMTNPEMIKVKSKELTADLIDQYYVRAKDFEKFDIMTRL---F 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              + +  +IF   K+ V  L   L+ +G++   IHG++ Q+ RM +L +FK G + ++V
Sbjct: 235 DVQSPELTLIFGRTKRRVDELTRGLKARGYNAEGIHGDLSQQKRMSVLKSFKAGRLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG+ G + T V   +++++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGVSVTFVTPNEMEYLRII 354

Query: 361 EKLIEKKV---------DWLNGDL----SSLNPPLEKIDIAQHNH 392
           E+L +K++         +   G L    + +N  +EK  +A++N 
Sbjct: 355 EELTKKRMLPLQPPSEKEAFKGQLAAAVADINSMIEKGQLAKYNE 399


>gi|229171082|ref|ZP_04298680.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3]
 gi|228612412|gb|EEK69636.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3]
          Length = 530

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 155/382 (40%), Positives = 228/382 (59%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L 
Sbjct: 3   TFRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+     ++ PTRELA QV +   K GK+  + +  + GG     Q + L++
Sbjct: 63  KVDTNKEAVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTL
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPDTHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+  P+ I+V     T   I+           KK   +   L  
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ---FYLEVQEKKKFDVLTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG I+++VA
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++KVD +     +L+  LE
Sbjct: 357 RTTKRKVDRMEA--PTLDEALE 376


>gi|104783960|ref|YP_610458.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95112947|emb|CAK17675.1| ATP-dependent RNA helicase RhlE, DEAD box family [Pseudomonas
           entomophila L48]
          Length = 634

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 170/407 (41%), Positives = 248/407 (60%), Gaps = 13/407 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L  G       R   R PR L+L PTRELAAQV D+F+ Y ++ N   A + GG+   
Sbjct: 61  ERLFPGGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLNFISACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + +G DVL+  PGR+LD   +G + ++ +EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQVQAMAKGVDVLVACPGRLLDLAGQGSVDLSRVEILVLDEADRMLDMGFIHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  +++  L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRAL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   LEK G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITLGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            T++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A ++VA ++
Sbjct: 298 NTVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
            K + +IE++ ++K+   D +  D S++     ++   Q N+ R   
Sbjct: 358 EKLLKSIERVTKQKIPDGDLMGFDASTVEAEKPEVRERQQNNGRGGR 404


>gi|229015638|ref|ZP_04172628.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273]
 gi|229021830|ref|ZP_04178406.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272]
 gi|228739470|gb|EEL89890.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272]
 gi|228745658|gb|EEL95670.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273]
          Length = 530

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 155/382 (40%), Positives = 228/382 (59%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L 
Sbjct: 3   TFRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    R    + +++ PTRELA QV +   K GK+  + +  + GG     Q + L++
Sbjct: 63  KVDT---RKEAVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTL
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+  P+ I+V     T   I+           KK   +   L  
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ---FYLEVQEKKKFDVLTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG I+++VA
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++KVD +     +L+  LE
Sbjct: 357 RTTKRKVDRMEA--PTLDEALE 376


>gi|229074285|ref|ZP_04207329.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18]
 gi|229094946|ref|ZP_04225949.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29]
 gi|229113900|ref|ZP_04243333.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3]
 gi|228669561|gb|EEL24970.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3]
 gi|228688479|gb|EEL42354.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29]
 gi|228708837|gb|EEL60966.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18]
          Length = 529

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 155/382 (40%), Positives = 228/382 (59%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L 
Sbjct: 3   TFRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    R    + +++ PTRELA QV +   K GK+  + +  + GG     Q + L++
Sbjct: 63  KVDT---RKEAVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTL
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+  P+ I+V     T   I+           KK   +   L  
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ---FYLEVQEKKKFDVLTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG I+++VA
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++KVD +     +L+  LE
Sbjct: 357 RTTKRKVDRMEA--PTLDEALE 376


>gi|330957006|gb|EGH57266.1| helicase [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 630

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 181/493 (36%), Positives = 270/493 (54%), Gaps = 48/493 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L          R   R PR L+L PTRELAAQV D+F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGTN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSNDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLPANHKRSL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  +IF   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITVGAWEQVLIFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPP----LEKIDIAQHNHARKNNPIPQKSTGF 406
            K + +IE++  +K+   D +  D++++        E+ D+     AR       K+ G 
Sbjct: 358 EKLLKSIERMTRQKIPDGDLMGFDITAVEAEKPEVRERPDVRNPRGARPARGDGDKNNGG 417

Query: 407 DR-------------------------RKKN------YSSQKSHIPLKESEKISKLQQDI 435
            R                         R+K        S Q++  P        +   + 
Sbjct: 418 RRDKGKDKGKEKPAAAAAAGERPARQPREKKPREGTPRSEQRASQPATPRPASDRAPDEF 477

Query: 436 QENDADSLGFRGN 448
           ++++ D+ G R +
Sbjct: 478 RDDEVDNFGNRAD 490


>gi|294012034|ref|YP_003545494.1| putative helicase [Sphingobium japonicum UT26S]
 gi|292675364|dbj|BAI96882.1| putative helicase [Sphingobium japonicum UT26S]
          Length = 461

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 153/429 (35%), Positives = 233/429 (54%), Gaps = 5/429 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F DLGL+  ++ A+    Y  PTPIQ + IP++L+  D+CGIAQTGTGKTA+F LP  
Sbjct: 1   MQFTDLGLAEPILKALAAKKYASPTPIQAQAIPVLLKGKDLCGIAQTGTGKTAAFALPSL 60

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      ++  R L+L PTRELAAQ+A +F  YG+   L+V ++ GG+P   Q + 
Sbjct: 61  DHFARNPKPTPLQGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVEVVFGGVPINRQIRA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+++ TPGR+LD  ++    + + EI V+DEAD+M+DMGFI  ++ I  L+P  R
Sbjct: 121 LGRGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPKER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L FSATM  E++ ++  FL +P ++ V   S+TAE +            +       L
Sbjct: 181 QNLFFSATMPGEIEALASQFLHDPVKVSVAPQSTTAERVRQQATFVNQMEKQAL---LNL 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               + +   +IF   K     +   LE  G    AIHGN  Q  R   L  F+ G ++L
Sbjct: 238 TIRSEDIDRALIFTRTKHGADRVVRFLEGAGIQAVAIHGNKSQAQRTTALQAFRHGHVKL 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  V HV NF++PN  E Y+HRIGRT RAG  G A + VA ++  ++ 
Sbjct: 298 LVATDIAARGIDVSGVSHVINFELPNVPEQYVHRIGRTARAGAEGVAISFVADDERPYLK 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           AIE+  + K+D +    + +         A     R+  P  +      +R+     ++ 
Sbjct: 358 AIERTTKVKLDVVPLPENFVEAVRNLPKAAPQRKGREQTPEQKTRRAEGQRRYQDQQKQP 417

Query: 419 HIPLKESEK 427
               + + +
Sbjct: 418 RGNAERAHR 426


>gi|255008452|ref|ZP_05280578.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313146179|ref|ZP_07808372.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313134946|gb|EFR52306.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
          Length = 427

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 161/431 (37%), Positives = 243/431 (56%), Gaps = 9/431 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY  PTPIQ ++IP++LQ  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MTFENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K   R    + L+L PTRELA Q+ ++FE YG+   L  A++ GG+  + Q   L 
Sbjct: 61  QKLYKTDHRKG-IKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALR 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +L+ TPGR+LD  ++G + +N+++  V+DEADRMLDMGFI  I+ I  L+P  RQT
Sbjct: 120 GGIQILVATPGRLLDLISQGFVSLNSLDFFVLDEADRMLDMGFIHDIKRILKLLPTKRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++ ++ + L  P+++EV   SST + I         +  K   +      
Sbjct: 180 LFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKEKKDLLIHLL--- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++++ +IF   K     L   L K G    AIHGN  Q +R + L+NFK  T++ ++
Sbjct: 237 KDASIESVLIFTRTKYGADKLARILTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+++PN  E Y+HRIGRTGRAG  G A +    E++ ++  I
Sbjct: 297 ATDIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLKDI 356

Query: 361 EKLIEKKVDWLNGD----LSSLNPPLEKI-DIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           +KLI K +  +               EK  +I     A K     + +  F RRKK   +
Sbjct: 357 QKLIGKNIPVVKEHPFVTAEGAKAQEEKQEEIKVKAKANKVYRGSRANGDFWRRKKQKPN 416

Query: 416 QKSHIPLKESE 426
           Q S    ++ +
Sbjct: 417 QPSSNKQEKRK 427


>gi|229028084|ref|ZP_04184235.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271]
 gi|228733237|gb|EEL84068.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271]
          Length = 527

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 155/382 (40%), Positives = 228/382 (59%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L 
Sbjct: 3   TFRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+     ++ PTRELA QV +   K GK+  + +  + GG     Q + L++
Sbjct: 63  KVDTNKEAVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTL
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+  P+ I+V     T   I+           KK   +   L  
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ---FYLEVQEKKKFDVLTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG I+++VA
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++KVD +     +L+  LE
Sbjct: 357 RTTKRKVDRMEA--PTLDEALE 376


>gi|229159401|ref|ZP_04287421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803]
 gi|228624068|gb|EEK80874.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803]
          Length = 528

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 155/382 (40%), Positives = 228/382 (59%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L 
Sbjct: 3   TFRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+     ++ PTRELA QV +   K GK+  + +  + GG     Q + L++
Sbjct: 63  KVDTNKEAVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTL
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+  P+ I+V     T   I+           KK   +   L  
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ---FYLEVQEKKKFDVLTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG I+++VA
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++KVD +     +L+  LE
Sbjct: 357 RTTKRKVDRMEA--PTLDEALE 376


>gi|229188506|ref|ZP_04315550.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           10876]
 gi|228594969|gb|EEK52744.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           10876]
          Length = 528

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 155/382 (40%), Positives = 228/382 (59%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L 
Sbjct: 3   TFRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+     ++ PTRELA QV +   K GK+  + +  + GG     Q + L++
Sbjct: 63  KVDTNKEAVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTL
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+  P+ I+V     T   I+           KK   +   L  
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ---FYLEVQEKKKFDVLTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG I+++VA
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++KVD +     +L+  LE
Sbjct: 357 RTTKRKVDRMEA--PTLDEALE 376


>gi|218895359|ref|YP_002443770.1| DEAD/DEAH box helicase [Bacillus cereus G9842]
 gi|228906018|ref|ZP_04069910.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 200]
 gi|228937529|ref|ZP_04100171.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228970416|ref|ZP_04131071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228976986|ref|ZP_04137394.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           Bt407]
 gi|218543277|gb|ACK95671.1| DEAD/DEAH box helicase [Bacillus cereus G9842]
 gi|228782733|gb|EEM30903.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           Bt407]
 gi|228789302|gb|EEM37226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228822140|gb|EEM68126.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228853621|gb|EEM98386.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 200]
 gi|326938018|gb|AEA13914.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 529

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 155/382 (40%), Positives = 228/382 (59%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L 
Sbjct: 3   TFRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+     ++ PTRELA QV +   K GK+  + +  + GG     Q + L++
Sbjct: 63  KVDTNKEAVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTL
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+  P+ I+V     T   I+           KK   +   L  
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ---FYLEVQEKKKFDVLTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG I+++VA
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++KVD +     +L+  LE
Sbjct: 357 RTTKRKVDRMEA--PTLDEALE 376


>gi|75760678|ref|ZP_00740704.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228898976|ref|ZP_04063254.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 4222]
 gi|74491828|gb|EAO55018.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228860669|gb|EEN05051.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 4222]
          Length = 521

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 155/382 (40%), Positives = 228/382 (59%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L 
Sbjct: 3   TFRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+     ++ PTRELA QV +   K GK+  + +  + GG     Q + L++
Sbjct: 63  KVDTNKEAVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTL
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+  P+ I+V     T   I+           KK   +   L  
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ---FYLEVQEKKKFDVLTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG I+++VA
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++KVD +     +L+  LE
Sbjct: 357 RTTKRKVDRMEA--PTLDEALE 376


>gi|330878076|gb|EGH12225.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 629

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 179/493 (36%), Positives = 270/493 (54%), Gaps = 48/493 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L          R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPP----LEKIDIAQHNHAR-------KNN-- 397
            K + +IE++ ++K+   D +  D++++        E+ D+     AR       KNN  
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARADGDKNNGG 417

Query: 398 ----------------------PIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDI 435
                                 P         R     S Q++  P    +   +   + 
Sbjct: 418 RRDKGKDKGKDKPAAAAATGERPARPPREKKPREGTPRSEQRAVQPSTPRQASDRAPDEF 477

Query: 436 QENDADSLGFRGN 448
           ++++ D+ G R +
Sbjct: 478 RDDEVDNFGNRAD 490


>gi|89890308|ref|ZP_01201818.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
 gi|89517223|gb|EAS19880.1| ATP-dependent RNA  helicase [Flavobacteria bacterium BBFL7]
          Length = 425

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 158/430 (36%), Positives = 238/430 (55%), Gaps = 7/430 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ A+ D GY  PTPIQ ++IP++L+  D+ G+AQTGTGKTA+F +P+L
Sbjct: 1   MTFKELGLVEPILRALQDQGYENPTPIQAQSIPVLLKGKDLLGVAQTGTGKTAAFSIPIL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L         R  + L++ PTRELA Q+ +NF+ Y K  ++   ++ GG+    Q  +
Sbjct: 61  QHLYNSAPPKGRRSIKALVVTPTRELAIQIDENFKAYAKYTDIRNTVIYGGVKQAQQVNR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G DVL+ TPGR+LD  N+G + + +IE  V+DEAD+MLDMGFI  I+ +  L+P  R
Sbjct: 121 LKSGIDVLVATPGRLLDLINQGFITLKHIEYFVLDEADQMLDMGFIHDIKKLLKLLPHER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM   + ++S   L + +R+ +    +TAE +       Y    K    L   
Sbjct: 181 QSLFFSATMPKTIVELSRQILGDFERVTIAPEKTTAEKV---EQQIYHVNKKNKTKLLIE 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L     + + ++F   K     +   LEK G    AIHGN  Q +R + L  FKEG IQ 
Sbjct: 238 LLETKLLDSTLVFSRTKHGANKIVKDLEKAGIGSAAIHGNKSQAARQRALGAFKEGKIQT 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI ++ +V N+D+PN AE+Y+HRIGRTGRAG  G A +    E+   + 
Sbjct: 298 LVATDIAARGIDIDELSYVVNYDLPNVAESYVHRIGRTGRAGASGLAVSFCMLEERPFLK 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEKLI++++  +          +E           +    PQ+  G +  K      K+
Sbjct: 358 DIEKLIKQQIPVIED--HDFPFKMEDAAEPSLKKQGQRGRRPQRKGGSNNGKSKSGGSKN 415

Query: 419 HIPLKESEKI 428
               K   + 
Sbjct: 416 AGSNKPRRRY 425


>gi|28872183|ref|NP_794802.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213971879|ref|ZP_03399980.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           T1]
 gi|301385283|ref|ZP_07233701.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato Max13]
 gi|28855437|gb|AAO58497.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213923363|gb|EEB56957.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           T1]
 gi|331015971|gb|EGH96027.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 629

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 179/493 (36%), Positives = 270/493 (54%), Gaps = 48/493 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L          R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPP----LEKIDIAQHNHAR-------KNN-- 397
            K + +IE++ ++K+   D +  D++++        E+ D+     AR       KNN  
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARADGDKNNGG 417

Query: 398 ----------------------PIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDI 435
                                 P         R     S Q++  P    +   +   + 
Sbjct: 418 RRDKGKDKGKDKPAAAAATGERPARPPREKKPREGTPRSEQRAVQPSTPRQASDRAPDEF 477

Query: 436 QENDADSLGFRGN 448
           ++++ D+ G R +
Sbjct: 478 RDDEVDNFGNRAD 490


>gi|330997890|ref|ZP_08321724.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
 gi|329569494|gb|EGG51264.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
          Length = 483

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 149/464 (32%), Positives = 249/464 (53%), Gaps = 13/464 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF DL LS +V+ A+ D  + + TPIQ   IP++L+  D+ G+AQTGTGKTA+F+LP+L
Sbjct: 1   MDFYDLDLSDQVLDALDDMNFTECTPIQEHAIPVILEGRDMIGVAQTGTGKTAAFLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + L  G    +    +I+ PTRELA Q+    E +    N++   + GG       ++  
Sbjct: 61  SKLSDGGYPEKAINCIIMSPTRELAQQIDQAMEGFSYYMNVSSVAVYGGNDGIRYEQEKR 120

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
               GADV+I TPGR++ H + G + ++ +   V+DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLAMGADVIIATPGRLISHLSLGNVDLSEVSFFVLDEADRMLDMGFSDDIMQIVKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q ++   L +P  +++       +       + Y  Y  +   L +
Sbjct: 181 RQTIMFSATMPRKIQDLARTILHDPVEVKLAVSKPADKI----VQSAYVCYEAQKVSLVK 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L ++      I+F + K  V ++  +L + GF V A+H +++Q+ R +++  FK   I 
Sbjct: 237 KLFAERPPHRVIVFASSKLKVKDMAIALGRAGFKVGAMHSDLEQQERDEVMYKFKAQQID 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V NFDVP+ AE+Y+HRIGRT RA   G+A TLV+++D +  
Sbjct: 297 VLVATDIVARGIDIDDIQLVINFDVPHDAEDYVHRIGRTARANNDGEAITLVSEKDQQRF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            +IE  +E +++       SL   L +    +     +       S    RR+    +++
Sbjct: 357 ASIEHFLETEIEK-----RSLPEGLGEGPAYRPEKGGEKGNGRHGSPRHGRRQGKSGNRR 411

Query: 418 SHIPLKESEKISKLQQDIQENDADSL-GFRGNMPAFMLPKNRGK 460
              P+ ++   +  +     + +  + G     P+    KN+ K
Sbjct: 412 KTSPIPQTHTPNNTKAQASGSKSAPVNGDAPKSPSLTEKKNKNK 455


>gi|78186470|ref|YP_374513.1| DEAD/DEAH box helicase-like [Chlorobium luteolum DSM 273]
 gi|78166372|gb|ABB23470.1| ATP-dependent RNA helicase CsdA [Chlorobium luteolum DSM 273]
          Length = 590

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 142/372 (38%), Positives = 225/372 (60%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DL LS  ++ A+ + GY  PTPIQ +TIPL+L+  DV G AQTGTGKTA+F LP+L+
Sbjct: 11  NFTDLNLSEPIMRALKEVGYETPTPIQARTIPLMLEGRDVLGQAQTGTGKTAAFALPILS 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     +  P+ L+L PTRELA QVA+ F KY +       L I  G  +  Q + L+
Sbjct: 71  GIDLS---LTDPQVLVLAPTRELAIQVAEAFHKYAEYLKGFHVLPIYGGQDYGGQLRMLK 127

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG L +++++ LV+DEAD ML MGFI  ++ I    P  RQ 
Sbjct: 128 RGVHVVVGTPGRVMDHMRRGSLNLDSLQCLVLDEADEMLRMGFIDDVEWILGETPKERQV 187

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++++++ +L +P  + +   ++T ETI   +      +      +   + 
Sbjct: 188 ALFSATMPAPIRRIAQKYLNSPAEVTIEGKTTTVETIRQRYWIVGGSHK---LDILTRIL 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  +IF   K   + L   L+ +G++  A++G++ Q  R + +   K+G++ +++
Sbjct: 245 EVEPFEGMLIFVRTKTMTLELAEKLQARGYAAAALNGDMVQNQRERTVDQLKDGSLNIVI 304

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+DVP   E+Y+HRIGRTGRAGR G+A   VA  +   + AI
Sbjct: 305 ATDVAARGLDVERISHVINYDVPYDTESYVHRIGRTGRAGRSGEAILFVAPREKNMLYAI 364

Query: 361 EKLIEKKVDWLN 372
           EK   K+++ + 
Sbjct: 365 EKATRKRIELME 376


>gi|254756954|ref|ZP_05208982.1| DEAD/DEAH box helicase [Bacillus anthracis str. Australia 94]
          Length = 516

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 155/382 (40%), Positives = 230/382 (60%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L 
Sbjct: 3   TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+     ++ PTRELA QV +   K GK+  + +  + GG     Q + L++
Sbjct: 63  KVDTHKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTL
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+  P+ I+V     T   I+           KK   +   L  
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ---FYLEVQEKKKFDVLTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++K+D +  D  +L+  LE
Sbjct: 357 RTTKRKMDRM--DAPTLDEALE 376


>gi|228956670|ref|ZP_04118461.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228803008|gb|EEM49835.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 517

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 155/382 (40%), Positives = 230/382 (60%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L 
Sbjct: 3   TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+     ++ PTRELA QV +   K GK+  + +  + GG     Q + L++
Sbjct: 63  KVDTHKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTL
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+  P+ I+V     T   I+           KK   +   L  
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ---FYLEVQEKKKFDVLTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++K+D +  D  +L+  LE
Sbjct: 357 RTTKRKMDRM--DAPTLDEALE 376


>gi|229041132|ref|ZP_04189892.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676]
 gi|228727214|gb|EEL78411.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676]
          Length = 525

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 155/382 (40%), Positives = 230/382 (60%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L 
Sbjct: 3   TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+     ++ PTRELA QV +   K GK+  + +  + GG     Q + L++
Sbjct: 63  KVDTHKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTL
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+  P+ I+V     T   I+           KK   +   L  
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ---FYLEVQEKKKFDVLTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++K+D +  D  +L+  LE
Sbjct: 357 RTTKRKMDRM--DAPTLDEALE 376


>gi|228950768|ref|ZP_04112897.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229067991|ref|ZP_04201304.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185]
 gi|229077588|ref|ZP_04210230.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2]
 gi|229176827|ref|ZP_04304229.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W]
 gi|228606719|gb|EEK64138.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W]
 gi|228705727|gb|EEL58071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2]
 gi|228715129|gb|EEL66992.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185]
 gi|228808908|gb|EEM55398.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 525

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 155/382 (40%), Positives = 230/382 (60%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L 
Sbjct: 3   TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+     ++ PTRELA QV +   K GK+  + +  + GG     Q + L++
Sbjct: 63  KVDTHKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTL
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+  P+ I+V     T   I+           KK   +   L  
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ---FYLEVQEKKKFDVLTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++K+D +  D  +L+  LE
Sbjct: 357 RTTKRKMDRM--DAPTLDEALE 376


>gi|206972279|ref|ZP_03233226.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|218235804|ref|YP_002365074.1| DEAD/DEAH box helicase [Bacillus cereus B4264]
 gi|228919172|ref|ZP_04082546.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|229148635|ref|ZP_04276889.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550]
 gi|206732853|gb|EDZ50028.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|218163761|gb|ACK63753.1| DEAD/DEAH box helicase [Bacillus cereus B4264]
 gi|228634893|gb|EEK91468.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550]
 gi|228840483|gb|EEM85750.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 533

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 155/382 (40%), Positives = 230/382 (60%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L 
Sbjct: 3   TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+     ++ PTRELA QV +   K GK+  + +  + GG     Q + L++
Sbjct: 63  KVDTHKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTL
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+  P+ I+V     T   I+           KK   +   L  
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ---FYLEVQEKKKFDVLTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++K+D +  D  +L+  LE
Sbjct: 357 RTTKRKMDRM--DAPTLDEALE 376


>gi|229107908|ref|ZP_04237540.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15]
 gi|229125742|ref|ZP_04254771.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-Cer4]
 gi|229143032|ref|ZP_04271470.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST24]
 gi|296501059|ref|YP_003662759.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|146291075|sp|Q81IT9|CSHA_BACCR RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|228640440|gb|EEK96832.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST24]
 gi|228657715|gb|EEL13524.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-Cer4]
 gi|228675551|gb|EEL30763.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15]
 gi|296322111|gb|ADH05039.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
          Length = 533

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 155/382 (40%), Positives = 230/382 (60%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L 
Sbjct: 3   TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+     ++ PTRELA QV +   K GK+  + +  + GG     Q + L++
Sbjct: 63  KVDTHKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTL
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+  P+ I+V     T   I+           KK   +   L  
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ---FYLEVQEKKKFDVLTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++K+D +  D  +L+  LE
Sbjct: 357 RTTKRKMDRM--DAPTLDEALE 376


>gi|52144993|ref|YP_081836.1| DEAD/DEAH box helicase [Bacillus cereus E33L]
 gi|81689748|sp|Q63GX5|CSHA_BACCZ RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|51978462|gb|AAU20012.1| DEAD/DEAH box helicase [Bacillus cereus E33L]
          Length = 528

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 155/382 (40%), Positives = 230/382 (60%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L 
Sbjct: 3   TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+     ++ PTRELA QV +   K GK+  + +  + GG     Q + L++
Sbjct: 63  KVDTHKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTL
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+  P+ I+V     T   I+           KK   +   L  
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ---FYLEVQEKKKFDVLTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++K+D +  D  +L+  LE
Sbjct: 357 RTTKRKMDRM--DAPTLDEALE 376


>gi|42779348|ref|NP_976595.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987]
 gi|206977074|ref|ZP_03237974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217957807|ref|YP_002336351.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|222094007|ref|YP_002528058.1| dead/deah box helicase [Bacillus cereus Q1]
 gi|229137077|ref|ZP_04265701.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST26]
 gi|229194624|ref|ZP_04321421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293]
 gi|81700027|sp|Q73EU1|CSHA_BACC1 RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|42735263|gb|AAS39203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           ATCC 10987]
 gi|206744723|gb|EDZ56130.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217064501|gb|ACJ78751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|221238056|gb|ACM10766.1| DEAD/DEAH box helicase [Bacillus cereus Q1]
 gi|228588845|gb|EEK46866.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293]
 gi|228646384|gb|EEL02594.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST26]
 gi|324324246|gb|ADY19506.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 525

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 155/382 (40%), Positives = 230/382 (60%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L 
Sbjct: 3   TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+     ++ PTRELA QV +   K GK+  + +  + GG     Q + L++
Sbjct: 63  KVDTHKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTL
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+  P+ I+V     T   I+           KK   +   L  
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ---FYLEVQEKKKFDVLTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++K+D +  D  +L+  LE
Sbjct: 357 RTTKRKMDRM--DAPTLDEALE 376


>gi|30260423|ref|NP_842800.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47525504|ref|YP_016853.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47567484|ref|ZP_00238196.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|49183266|ref|YP_026518.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|49479130|ref|YP_034574.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|65317675|ref|ZP_00390634.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|118475995|ref|YP_893146.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|165871548|ref|ZP_02216194.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167634144|ref|ZP_02392466.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|167640350|ref|ZP_02398615.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170687759|ref|ZP_02878974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|170707898|ref|ZP_02898348.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|177653423|ref|ZP_02935633.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190567376|ref|ZP_03020290.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|196035956|ref|ZP_03103357.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196041156|ref|ZP_03108452.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|196046212|ref|ZP_03113439.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|218901440|ref|YP_002449274.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|225862289|ref|YP_002747667.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227812915|ref|YP_002812924.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228912978|ref|ZP_04076622.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228925493|ref|ZP_04088587.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228931740|ref|ZP_04094641.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228983493|ref|ZP_04143703.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229089370|ref|ZP_04220646.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42]
 gi|229119903|ref|ZP_04249162.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201]
 gi|229154007|ref|ZP_04282136.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           4342]
 gi|229182634|ref|ZP_04309880.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1]
 gi|229604746|ref|YP_002864874.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254686589|ref|ZP_05150448.1| DEAD/DEAH box helicase [Bacillus anthracis str. CNEVA-9066]
 gi|254723571|ref|ZP_05185358.1| DEAD/DEAH box helicase [Bacillus anthracis str. A1055]
 gi|254734933|ref|ZP_05192645.1| DEAD/DEAH box helicase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254739718|ref|ZP_05197411.1| DEAD/DEAH box helicase [Bacillus anthracis str. Kruger B]
 gi|254754911|ref|ZP_05206946.1| DEAD/DEAH box helicase [Bacillus anthracis str. Vollum]
 gi|301051970|ref|YP_003790181.1| DEAD/DEAH box helicase [Bacillus anthracis CI]
 gi|81696998|sp|Q6HPE6|CSHA_BACHK RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|81715465|sp|Q81VG0|CSHA_BACAN RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|134039177|sp|A0R8U6|CSHA_BACAH RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|30253744|gb|AAP24286.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47500652|gb|AAT29328.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|47555886|gb|EAL14225.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|49177193|gb|AAT52569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|49330686|gb|AAT61332.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|118415220|gb|ABK83639.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis str. Al Hakam]
 gi|164712652|gb|EDR18183.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167511752|gb|EDR87133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|167530458|gb|EDR93173.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170127256|gb|EDS96133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|170668286|gb|EDT19034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|172081463|gb|EDT66536.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190561503|gb|EDV15474.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|195991325|gb|EDX55292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196022957|gb|EDX61637.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|196028091|gb|EDX66702.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|218539043|gb|ACK91441.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|225790192|gb|ACO30409.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227005398|gb|ACP15141.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228600842|gb|EEK58416.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1]
 gi|228629528|gb|EEK86226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           4342]
 gi|228663560|gb|EEL19141.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201]
 gi|228693970|gb|EEL47657.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42]
 gi|228776237|gb|EEM24593.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228827920|gb|EEM73653.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228834238|gb|EEM79781.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228846673|gb|EEM91681.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229269154|gb|ACQ50791.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|300374139|gb|ADK03043.1| DEAD/DEAH box helicase [Bacillus cereus biovar anthracis str. CI]
          Length = 528

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 155/382 (40%), Positives = 230/382 (60%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L 
Sbjct: 3   TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+     ++ PTRELA QV +   K GK+  + +  + GG     Q + L++
Sbjct: 63  KVDTHKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTL
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+  P+ I+V     T   I+           KK   +   L  
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ---FYLEVQEKKKFDVLTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++K+D +  D  +L+  LE
Sbjct: 357 RTTKRKMDRM--DAPTLDEALE 376


>gi|187479233|ref|YP_787258.1| ATP-dependent RNA helicase [Bordetella avium 197N]
 gi|115423820|emb|CAJ50371.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
          Length = 477

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 163/425 (38%), Positives = 242/425 (56%), Gaps = 17/425 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FAD GL P ++ ++ + GY  PTPIQ + IP+V +  DV G AQTGTGKTA+F LP+L
Sbjct: 15  LTFADFGLHPLLLKSIAETGYTSPTPIQAQAIPVVAEGRDVMGAAQTGTGKTAAFTLPIL 74

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L         P        IL PTRELA QV +N ++Y  +  L  A++ GG+    Q
Sbjct: 75  HRLMPLANSSASPARHPVRALILTPTRELADQVYENVKRYSLHTPLRSAVVFGGVDIGPQ 134

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L +G +VL+ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF+P ++ I  L+P
Sbjct: 135 KEALRQGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLP 194

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT ++E++K+  ++L  P  IEV   ++TA+T+         +  +   + 
Sbjct: 195 PQRQGLLFSATFSNEIRKLGRSYLNQPVEIEVAARNATADTVTQIAYQMTGEAKRAAVVH 254

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                    +K  I+F N K     L   LE  G    +IHG+  Q  RMK L  FK G 
Sbjct: 255 L---VKSRGLKQVIVFSNTKIGTARLARQLELDGVKAESIHGDKSQADRMKALEAFKAGE 311

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGLD+  V  V N+D+P  AE+Y+HRIGRTGRAG  G+A  L   E+ +
Sbjct: 312 LEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPEEER 371

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           ++  IEKLI+++V     D+ S        ++  H+H R       +  G + R +    
Sbjct: 372 YLLDIEKLIKRQVPRGKLDIPS--------ELLAHSHGRGGERRSSR-EGRESRSEGREG 422

Query: 416 QKSHI 420
           ++S  
Sbjct: 423 RESFR 427


>gi|238920914|ref|YP_002934429.1| ATP-dependent RNA helicase SrmB [Edwardsiella ictaluri 93-146]
 gi|238870483|gb|ACR70194.1| ATP-dependent RNA helicase SrmB [Edwardsiella ictaluri 93-146]
          Length = 448

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 142/444 (31%), Positives = 231/444 (52%), Gaps = 7/444 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++L L  +++ A+ D GY +PT IQI  IP  +   DV G A TGTGKTA+F+LP + 
Sbjct: 5   NFSELELDERLLDALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  ++ +L +  + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRVLILTPTRELAMQVADQARELARHTSLDITTITGGVSYINHAEIFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L +          +E L++DEADRMLDMGF   I+ +++   + RQT
Sbjct: 125 TNQDLVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFASDIETVSAETRWRRQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ +               ++V+      E  +       A   K    L   L 
Sbjct: 185 LLFSATL-ESDAVHDFAARLLNDPVDVSAEPPRRERKKIQQWYYRADSLKHKTALLCNLL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   +IF  +++ V  L   L + G   C + G + Q  R + +    +G + ++V
Sbjct: 244 RQPDVTKSVIFVRKRERVHELVTWLHQAGIQACFLEGEMVQAKRNEAIKRMLDGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIPD+ HVFNFD+P  A+ Y+HRIGRT RAGR G A +L+   D   +  +
Sbjct: 304 ATDVAARGLDIPDISHVFNFDMPRSADVYLHRIGRTARAGRKGTAISLIEAHDQLLLGKV 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
            + +++ +   +  + +L P  +   +       K     +     D +KK   ++  H 
Sbjct: 364 SRYVQEPLK--SRVVDNLRPETKAPSLKNKGKPSKKVQAKRAQKKLDEQKKKVKTKVRH- 420

Query: 421 PLKESEKISKLQQDIQENDADSLG 444
             ++S+ I K +Q   +++  + G
Sbjct: 421 --RDSKNIGKRRQPNAQSNPATAG 442


>gi|163938237|ref|YP_001643121.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|229131241|ref|ZP_04260147.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST196]
 gi|163860434|gb|ABY41493.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
 gi|228652232|gb|EEL08163.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST196]
          Length = 538

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 156/382 (40%), Positives = 228/382 (59%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L 
Sbjct: 3   TFRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+     ++ PTRELA QV +   K GK+  + +  + GG     Q + L++
Sbjct: 63  KVDTNKDAVQGI---VIAPTRELAIQVGEELYKLGKHKRVRILPIYGGQDINRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTL
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+  P+ I+V     T   I+           KK   +   L  
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ---FYLEVQEKKKFDVLTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  IIF   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG I+++VA
Sbjct: 237 IQSPELAIIFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++KVD +     +L+  LE
Sbjct: 357 RTTKRKVDRMEA--PTLDEALE 376


>gi|170719671|ref|YP_001747359.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida W619]
 gi|169757674|gb|ACA70990.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 630

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 177/481 (36%), Positives = 262/481 (54%), Gaps = 39/481 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+ 
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 60  ------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                     +  R   R PR L+L PTRELAAQV D+F+ Y ++  L  A + GG+   
Sbjct: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + +G DVL+  PGR+LD   +G++ + ++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGRVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  +++  L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRAL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   LEK G S  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITLGAWEQVLVFTRTKHGANRLAEYLEKHGLSAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            +++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 NSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS---------- 403
            K + +IE++  +K+   +GDL   +P   + +  +     +NN    ++          
Sbjct: 358 EKLLKSIERVTRQKI--ADGDLMGFDPSQVEAEKPEVRERPQNNGRGGRNQQARGDGGKD 415

Query: 404 -----------------TGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFR 446
                               D+      S     P K  +K  + QQ  Q +   +   R
Sbjct: 416 GSGGRKDKGKDKGKAKQQAADKPADKEKSADKQQPRKPRDKKPRQQQASQNSVPKAPADR 475

Query: 447 G 447
            
Sbjct: 476 A 476


>gi|313200940|ref|YP_004039598.1| dead/deah box helicase domain-containing protein [Methylovorus sp.
           MP688]
 gi|312440256|gb|ADQ84362.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688]
          Length = 541

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 173/444 (38%), Positives = 260/444 (58%), Gaps = 10/444 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA LGL+  ++ A+ DAGY  PTPIQ++ IP VL   D+   AQTGTGKTA F LP+L  
Sbjct: 11  FAQLGLAEPILRAIADAGYTTPTPIQLQAIPQVLTGGDLLAGAQTGTGKTAGFTLPLLHL 70

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                G+ +   PR LIL PTRELAAQV ++ + YGK   L   ++ GG+    Q  +L+
Sbjct: 71  LQGRPGKNKAGQPRCLILTPTRELAAQVEESVQTYGKYLPLKSMVMFGGVGINPQVAQLK 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+L+ TPGR+LDH N+  + ++ +EILV+DEADRMLDMGFI  I+ + +L+P  RQ 
Sbjct: 131 KPLDILVATPGRLLDHANQKTVDLSAVEILVLDEADRMLDMGFIRDIKRVLALLPKQRQN 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT +DE++ +++  L NP  +EV   ++ +E +E         + +          
Sbjct: 191 LLFSATFSDEIKALADGLLHNPGFVEVARRNTASELVEQTVHLVRQSHKRDMVSHL---I 247

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+  +  +IF   K     L   L K G    AIHGN  Q +R K L+ FK+G++ ++V
Sbjct: 248 KQNNWQQVLIFTRTKHGANRLADKLVKDGIPAAAIHGNKSQSARTKALAQFKDGSLPVLV 307

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++PN AE+Y+HRIGRTGRAG  G A +LV +E+IK +  I
Sbjct: 308 ATDIAARGLDIDQLPQVVNFELPNVAEDYVHRIGRTGRAGATGAAVSLVDEEEIKLLKGI 367

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+LI++++  +  +   +  P++K   ++    R     P+   G  R+ +   +Q    
Sbjct: 368 ERLIKREIPRVEVE-GFVPSPVDKSAASEEREPR----APRPRQGQPRQGQPRQNQARQS 422

Query: 421 PLKESEKISKLQQDIQENDADSLG 444
             ++S+      +  +EN A   G
Sbjct: 423 QPRDSQASPSQPRQPRENAARPGG 446


>gi|253998846|ref|YP_003050909.1| DEAD/DEAH box helicase domain-containing protein [Methylovorus sp.
           SIP3-4]
 gi|253985525|gb|ACT50382.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. SIP3-4]
          Length = 538

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 173/444 (38%), Positives = 260/444 (58%), Gaps = 10/444 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA LGL+  ++ A+ DAGY  PTPIQ++ IP VL   D+   AQTGTGKTA F LP+L  
Sbjct: 11  FAQLGLAEPILRAIADAGYTTPTPIQLQAIPQVLTGGDLLAGAQTGTGKTAGFTLPLLHL 70

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                G+ +   PR LIL PTRELAAQV ++ + YGK   L   ++ GG+    Q  +L+
Sbjct: 71  LQGRPGKNKAGQPRCLILTPTRELAAQVEESVQTYGKYLPLKSMVMFGGVGINPQVAQLK 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+L+ TPGR+LDH N+  + ++ +EILV+DEADRMLDMGFI  I+ + +L+P  RQ 
Sbjct: 131 KPLDILVATPGRLLDHANQKTVDLSAVEILVLDEADRMLDMGFIRDIKRVLALLPKQRQN 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT +DE++ +++  L NP  +EV   ++ +E +E         + +          
Sbjct: 191 LLFSATFSDEIKALADGLLHNPGFVEVARRNTASELVEQTVHLVRQSHKRDMVSHL---I 247

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+  +  +IF   K     L   L K G    AIHGN  Q +R K L+ FK+G++ ++V
Sbjct: 248 KQNNWQQVLIFTRTKHGANRLADKLVKDGIPAAAIHGNKSQSARTKALAQFKDGSLPVLV 307

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++PN AE+Y+HRIGRTGRAG  G A +LV +E+IK +  I
Sbjct: 308 ATDIAARGLDIDQLPQVVNFELPNVAEDYVHRIGRTGRAGATGAAVSLVDEEEIKLLKGI 367

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+LI++++  +  +   +  P++K   ++    R     P+   G  R+ +   +Q    
Sbjct: 368 ERLIKREIPRVEVE-GFVPSPVDKSAASEEREPR----APRPRQGQPRQGQPRQNQARQS 422

Query: 421 PLKESEKISKLQQDIQENDADSLG 444
             ++S+      +  +EN A   G
Sbjct: 423 QPRDSQASPSQPRQPRENAARPGG 446


>gi|71033289|ref|XP_766286.1| eukaryotic translation initiation factor 4A [Theileria parva strain
           Muguga]
 gi|68353243|gb|EAN34003.1| eukaryotic translation initiation factor 4A, putative [Theileria
           parva]
          Length = 394

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 199/377 (52%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL  +++  +   G+ KP+ +Q + I  +L+  DV   +Q+GTGKT  F L  L 
Sbjct: 22  SFEDLGLKEEILKGIFAYGFDKPSAVQQRAIKPILEGRDVIIQSQSGTGKTCVFCLGALQ 81

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +      VR  + L+L PTRELA Q        G   N+ V   IGG       K LE 
Sbjct: 82  TVNSN---VRETQVLLLSPTRELAEQSQKVCLALGDYCNIEVHCCIGGKKVSDDIKALES 138

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+        L   NI+ L++DEAD ML+ GF   + ++   +P T Q +
Sbjct: 139 GVQIVSGTPGRVNHMITDRHLNTRNIKQLILDEADEMLNRGFKEQVYSVYRYLPPTIQVV 198

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  ++ +++  F+ NP ++ V     T E I+  F++   +  K   L       
Sbjct: 199 LVSATLPHDVIEITNKFMNNPFKVLVKRDELTLEGIKQFFISVEKEQWKFDTLCDL--YE 256

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IFCN K+ V  L   ++   F VC +HG + Q+ R  I+  F++G  +++++
Sbjct: 257 SLIITQAVIFCNTKEKVDWLAKKMKDGNFEVCKMHGEMSQKERNDIMQRFRKGESRVLIS 316

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RGLD+  V  V N+D+PN  E+YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 317 TDLWGRGLDVQQVSLVVNYDLPNSRESYIHRIGRSGRYGRKGVAINFVKDDDIRILRDIE 376

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  ++S L
Sbjct: 377 QYYSTQIDEMPMNISEL 393


>gi|325833432|ref|ZP_08165881.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
 gi|325485356|gb|EGC87825.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
          Length = 560

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 161/447 (36%), Positives = 232/447 (51%), Gaps = 4/447 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FADLGLS   + AV   GY  PTP+Q++ IPLVL+  D+   A TGTGKTA+F+LP+L+
Sbjct: 55  NFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPILS 114

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +G+   R PR L++ PTRELA Q++    +  +     V  + GG P+  Q  ++ R
Sbjct: 115 TLPRGKRGKRAPRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVFGGTPYGPQINEIRR 174

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+ D  N+G + +  I+ LV+DEADRMLDMGF+P +  I    P  RQTL
Sbjct: 175 GTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPADRQTL 234

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +QK   + L +P  +E+       ET +          + K   L Q L  
Sbjct: 235 LFSATIDHSIQKNLGSLLNDPAVVEIAR---NGETAQTVEQFMMPIANFKKPELLQALLE 291

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      I+F   K    +   +L   G+   +IH +  Q  R + L NF+ G   ++VA
Sbjct: 292 EKGSDRVIVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVA 351

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+PDV HV NFD+P+  E+Y+HRIGRTGRAG  G A + V +E  + +  IE
Sbjct: 352 TDVLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFVTRESRRTMSDIE 411

Query: 362 KLIEKKVDWLNGDLSSLNPP-LEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           KLI K V  +  +   L+   LEK                       +R      +K   
Sbjct: 412 KLIGKNVPLMELETYELDMTVLEKGKKGAPKKGGYKGNKGSGRPAGAKRSDKRGGEKRDF 471

Query: 421 PLKESEKISKLQQDIQENDADSLGFRG 447
             +   +      +       + G R 
Sbjct: 472 ERRSDSRAEGRSDNRPGRGKRAEGKRS 498


>gi|260584701|ref|ZP_05852447.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
           elegans ATCC 700633]
 gi|260157724|gb|EEW92794.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
           elegans ATCC 700633]
          Length = 509

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 161/416 (38%), Positives = 239/416 (57%), Gaps = 16/416 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ ++   G+ + TPIQ +TIPL L   DV G AQTGTGKTASF LPML
Sbjct: 1   MKFNELGLDSALLESIEKMGFEEATPIQSQTIPLALAGKDVIGQAQTGTGKTASFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +V+    L++ PTRELA Q  +   + GK+  + V  + GG     Q ++L+
Sbjct: 61  QKINLRNRKVQ---GLVIAPTRELAIQTQEELYRLGKDKKIHVQAVYGGADIGRQIRQLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH +R  L ++NIE LV+DEAD ML+MGF+  I++I  LVP  RQT
Sbjct: 118 DQPHIVVGTPGRLLDHISRKTLRLDNIETLVLDEADEMLNMGFLEDIESIIKLVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D+++++   F++ P+ + + +   TA  I+  FV                  
Sbjct: 178 LLFSATMPDDIKRIGVQFMKEPEHVRIKSSEMTATLIDQYFVKCKDFEKFDIMTRLL--- 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  I+F   K+ V  L   LE +GF    IHG++ Q+ RM +L +FK   + ++V
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEMRGFRAEGIHGDLSQQKRMSVLRDFKNNHLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQEGMSVTFVTPNEMDYLRVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPP--LEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           E L  K+       +++L PP  +E I+  Q   A +      KS    R K+  S
Sbjct: 355 EDLTRKR-------MTALRPPTQMEAIE-GQMKSAIEQIDEKMKSVDTRRFKEAIS 402


>gi|161510959|ref|YP_089142.2| ATP-dependent RNA helicase SrmB [Mannheimia succiniciproducens
           MBEL55E]
          Length = 445

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 143/438 (32%), Positives = 225/438 (51%), Gaps = 17/438 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F D  LSP+++ A+   GY +PT IQ + IP  +   DV G A TGTGKTA+F+LP + 
Sbjct: 5   QFEDFDLSPELLKALAQKGYARPTAIQSEAIPAAMDERDVLGSAPTGTGKTAAFLLPAIQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR L+L PTRELA QVA   E+  +   L++A + GG+ ++   +   
Sbjct: 65  HLLDYPRRKPGAPRVLVLTPTRELAMQVAQQAEELAQFTKLSIATITGGVAYQNHGEIFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR+L +          +EIL+ DEADRML MGF    + I++   + +QT
Sbjct: 125 KNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKISAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT+  EL       +       ++   S  E  +      +A   +    L     
Sbjct: 185 FLFSATLEGELLVDFAERILTDPVK-IDAEPSRRERKKINQWYYHADSYEHKVKLLARFI 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + +  GI+F  ++++V  L   L K+G     + G + Q  R   +   K G + L+V
Sbjct: 244 ADEQVSKGIVFVRRREDVRELSEILRKRGIRSTYLEGEMAQTQRNNAIDKLKNGIVTLLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K++  I
Sbjct: 304 ATDVAARGIDIEDISHVMNFDLPYNADTYLHRIGRTARAGKKGTAVSFVEGHDYKYLGKI 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           ++  E+               L K  I +    R   P   +     +++K Y  QK   
Sbjct: 364 KRYTEE---------------LLKPRIIEGLEPRTKAPKDGEIKTVSKKQKAYIRQKREE 408

Query: 421 PLKESEKISKLQQDIQEN 438
             K ++K +KL++   +N
Sbjct: 409 KRKTTQKKAKLRRQDTKN 426


>gi|52308057|gb|AAU38557.1| SrmB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 462

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 143/438 (32%), Positives = 225/438 (51%), Gaps = 17/438 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F D  LSP+++ A+   GY +PT IQ + IP  +   DV G A TGTGKTA+F+LP + 
Sbjct: 22  QFEDFDLSPELLKALAQKGYARPTAIQSEAIPAAMDERDVLGSAPTGTGKTAAFLLPAIQ 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR L+L PTRELA QVA   E+  +   L++A + GG+ ++   +   
Sbjct: 82  HLLDYPRRKPGAPRVLVLTPTRELAMQVAQQAEELAQFTKLSIATITGGVAYQNHGEIFN 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR+L +          +EIL+ DEADRML MGF    + I++   + +QT
Sbjct: 142 KNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKISAETRWRKQT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT+  EL       +       ++   S  E  +      +A   +    L     
Sbjct: 202 FLFSATLEGELLVDFAERILTDPVK-IDAEPSRRERKKINQWYYHADSYEHKVKLLARFI 260

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + +  GI+F  ++++V  L   L K+G     + G + Q  R   +   K G + L+V
Sbjct: 261 ADEQVSKGIVFVRRREDVRELSEILRKRGIRSTYLEGEMAQTQRNNAIDKLKNGIVTLLV 320

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K++  I
Sbjct: 321 ATDVAARGIDIEDISHVMNFDLPYNADTYLHRIGRTARAGKKGTAVSFVEGHDYKYLGKI 380

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           ++  E+               L K  I +    R   P   +     +++K Y  QK   
Sbjct: 381 KRYTEE---------------LLKPRIIEGLEPRTKAPKDGEIKTVSKKQKAYIRQKREE 425

Query: 421 PLKESEKISKLQQDIQEN 438
             K ++K +KL++   +N
Sbjct: 426 KRKTTQKKAKLRRQDTKN 443


>gi|225719408|gb|ACO15550.1| Eukaryotic initiation factor 4A-III [Caligus clemensi]
          Length = 403

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 128/377 (33%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ ++I  +L+  DV   AQ+GTGKTA+F + +L 
Sbjct: 31  TFDSMGLREDLLRGIYAYGFEKPSAIQQRSIKPILKGRDVIAQAQSGTGKTATFSISILQ 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++      +    L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 91  SIDTSLRETQC---LVLSPTRELAVQIQKVLLALGDYMNVQCHACIGGTNLGEDIRKLDY 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q  
Sbjct: 148 GQHVVSGTPGRVYDMIRRRTLRTRGIKMLVLDEADEMLNKGFKEQIYDVYRYLPPFTQIC 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 208 LISATLPHEILEMTSKFMADPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  ++++ 
Sbjct: 266 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDVPQKERDDIMKEFRSGQSRVLIT 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 326 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRDIE 385

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 386 QYYSTQIDEMPMNVADL 402


>gi|116333167|ref|YP_794694.1| superfamily II DNA/RNA helicase [Lactobacillus brevis ATCC 367]
 gi|116098514|gb|ABJ63663.1| Superfamily II DNA and RNA helicase [Lactobacillus brevis ATCC 367]
          Length = 523

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 155/443 (34%), Positives = 252/443 (56%), Gaps = 14/443 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS  ++ A+   GY + TPIQ +TIP+VL   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFKELGLSEDLLKAITSVGYEEATPIQAETIPMVLAGQDVIGQAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++K    V+    L++ PTRELA Q  +   K G+     V ++ GG     Q K L+
Sbjct: 61  EKIDKSNENVQ---ALVVSPTRELAIQTQEEIYKLGRTERANVQVVYGGADIRRQIKSLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V++ TPGR+LDH  R  L ++++++LV+DEAD ML+MGF+  I++I   +P  RQT
Sbjct: 118 NHPQVVVGTPGRLLDHIRRHTLKLDHVQMLVLDEADEMLNMGFLDDIEDIIKQLPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  E+++V   F+++PK +++     T + I+  +V +                
Sbjct: 178 MLFSATMPPEIKRVGVQFMKDPKHVKIKAKELTTDLIDQFYVRSRDFEKFDVMTR---FF 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              +    I+F   K+ V  +   LE +G++   IHG++ Q+ R +I+++F+ G + ++V
Sbjct: 235 DVQSPDLTIVFTRTKRRVDEIASGLEARGYNAAGIHGDLTQKRRTQIMNDFRHGKLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV+N+D+P   ++Y+HR+GRTGRAG+HG + T V   ++ ++  I
Sbjct: 295 ATDVAARGIDINDVTHVYNYDIPQDPDSYVHRVGRTGRAGKHGVSMTFVTPNEMDYLREI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EKL   KV  L      L PP ++        A K       +   D+ K   +++    
Sbjct: 355 EKL--TKVRMLP-----LKPPSDEEAFVSQLGAAKETIADLVNKA-DKEKYAKAAESLLN 406

Query: 421 PLKESEKISKLQQDIQENDADSL 443
                + ++ L  D+ ++D + +
Sbjct: 407 EYDAEDLVAALLSDVTKDDNNQV 429


>gi|226942516|ref|YP_002797589.1| DEAD box family ATP-dependent RNA helicase [Azotobacter vinelandii
           DJ]
 gi|226717443|gb|ACO76614.1| ATP-dependent RNA helicase, DEAD box family [Azotobacter vinelandii
           DJ]
          Length = 557

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 175/436 (40%), Positives = 256/436 (58%), Gaps = 16/436 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V AV  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAVEAAGYAQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 61  TILEKGRARVRMPRTL-------ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L  G    +  R         +L PTRELAAQV D+F+ Y ++  L  A + GG+   
Sbjct: 61  ERLFPGGHPDKEHRHGPRQARVLVLTPTRELAAQVHDSFKLYARDLKLVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQVQALSRGVDVLVACPGRLLDLVGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L +P+RIEV  P++T E IE       A + +   
Sbjct: 181 LPPKRQNLLFSATFSADIVNLTNKLLHDPERIEVTPPNTTVERIEQRVFRLPAGHKRAL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +Q   +  ++F   K     L   L+K G    AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLVTQGAWEQVLVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALADFKS 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           GTI+++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GTIRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            K + +IE++  + +   DW   D+ ++    EK ++ +  H  +N    +K  G D+ +
Sbjct: 358 EKLLKSIERMTRQSIPEGDWAGFDIGAVEA--EKPEV-REAHPPRNASAGRKDKGKDKGQ 414

Query: 411 KNYSSQKSHIPLKESE 426
           +    +    P   + 
Sbjct: 415 EKSREKTRRRPAARNA 430


>gi|257792189|ref|YP_003182795.1| DEAD/DEAH box helicase domain-containing protein [Eggerthella lenta
           DSM 2243]
 gi|257476086|gb|ACV56406.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
          Length = 508

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 161/447 (36%), Positives = 232/447 (51%), Gaps = 4/447 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FADLGLS   + AV   GY  PTP+Q++ IPLVL+  D+   A TGTGKTA+F+LP+L+
Sbjct: 3   NFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPILS 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +G+   R PR L++ PTRELA Q++    +  +     V  + GG P+  Q  ++ R
Sbjct: 63  TLPRGKRGKRAPRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVFGGTPYGPQINEIRR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+ D  N+G + +  I+ LV+DEADRMLDMGF+P +  I    P  RQTL
Sbjct: 123 GTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPADRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +QK   + L +P  +E+       ET +          + K   L Q L  
Sbjct: 183 LFSATIDHSIQKNLGSLLNDPAVVEIAR---NGETAQTVEQFMMPIANFKKPELLQALLE 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      I+F   K    +   +L   G+   +IH +  Q  R + L NF+ G   ++VA
Sbjct: 240 EKGSDRVIVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+PDV HV NFD+P+  E+Y+HRIGRTGRAG  G A + V +E  + +  IE
Sbjct: 300 TDVLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFVTRESRRTMSDIE 359

Query: 362 KLIEKKVDWLNGDLSSLNPP-LEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           KLI K V  +  +   L+   LEK                       +R      +K   
Sbjct: 360 KLIGKNVPLMELETYELDMTVLEKGKKGAPKKGGYKGNKGSGRPAGAKRSDKRGGEKRDF 419

Query: 421 PLKESEKISKLQQDIQENDADSLGFRG 447
             +   +      +       + G R 
Sbjct: 420 ERRSDSRAEGRSDNRPGRGKRAEGKRS 446


>gi|189467630|ref|ZP_03016415.1| hypothetical protein BACINT_04020 [Bacteroides intestinalis DSM
           17393]
 gi|189435894|gb|EDV04879.1| hypothetical protein BACINT_04020 [Bacteroides intestinalis DSM
           17393]
          Length = 482

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 160/482 (33%), Positives = 255/482 (52%), Gaps = 24/482 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  + +S  V  A+L+  Y  PT IQ + IP  L   D+ G+AQTGTGKTA+F +P++
Sbjct: 2   MTFKQMNISEPVCRALLEKNYSTPTLIQEQAIPEALTGRDLLGLAQTGTGKTAAFAVPII 61

Query: 61  TI-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  + + +   R  R LIL PTRELA Q+ ++   Y +   L   ++ GG+  ++Q
Sbjct: 62  EQLLAAPMPQRKGAPRSIRALILTPTRELAIQIDESLADYTRYTTLRHTVIFGGVKQKSQ 121

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G D+L  TPGR+LD  ++G + ++++   V+DEADRMLDMGFI  ++ +   +P
Sbjct: 122 TDELRAGTDILTATPGRLLDLMSQGFIRLDDVRHFVLDEADRMLDMGFIHDVKRLLPKLP 181

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +QTL FSATM D + +++++ L NP R+EV   SS  E I            K+    
Sbjct: 182 PKKQTLFFSATMPDSIDRLAKSLLHNPARVEVTPASSVVEIISQSVYRVEKPQKKELLAQ 241

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                  +     ++F   K    N+   L ++G +  +IHG+  Q +R + LSNFKEG 
Sbjct: 242 LL---LGEAGHQVLVFSRTKHGADNIARYLSRRGIACESIHGDKSQNARQRALSNFKEGR 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +++A+D+AARG+DI  +  V NFD+P+  E Y+HRIGRTGRAG  G+A    + E+  
Sbjct: 299 SNVIIATDIAARGIDIKGLDLVLNFDLPDVPETYVHRIGRTGRAGCEGRAIAFCSSEEAP 358

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPL------EKIDIAQHNHARKNNPIPQKSTGFDRR 409
            +  IEKL   K+     +L SL  P          +IA  + +R     PQ +   + R
Sbjct: 359 MLREIEKLTGIKLVQQKHNLPSLGEPAASPTTSSAQNIALKSQSRTQGGRPQNNRRREDR 418

Query: 410 KK----NYSSQKSHIPLKESEK---ISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
           K+      S+QK+ +  ++ ++     +  + +Q++     G     P+   PK+  KL 
Sbjct: 419 KRPVEPTGSTQKAVVSAEKPKRDNNRPERPRPVQQSGQKKSGSGKPEPS---PKSPAKLR 475

Query: 463 DK 464
            +
Sbjct: 476 SR 477


>gi|317490115|ref|ZP_07948604.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
 gi|316910820|gb|EFV32440.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
          Length = 509

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 161/447 (36%), Positives = 232/447 (51%), Gaps = 4/447 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FADLGLS   + AV   GY  PTP+Q++ IPLVL+  D+   A TGTGKTA+F+LP+L+
Sbjct: 3   NFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPILS 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +G+   R PR L++ PTRELA Q++    +  +     V  + GG P+  Q  ++ R
Sbjct: 63  TLPRGKRGKRAPRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVFGGTPYGPQINEIRR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVLI TPGR+ D  N+G + +  I+ LV+DEADRMLDMGF+P +  I    P  RQTL
Sbjct: 123 GTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPADRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +QK   + L +P  +E+       ET +          + K   L Q L  
Sbjct: 183 LFSATIDHSIQKNLGSLLNDPAVVEIAR---NGETAQTVEQFMMPIANFKKPELLQALLE 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      I+F   K    +   +L   G+   +IH +  Q  R + L NF+ G   ++VA
Sbjct: 240 EKGSDRVIVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+PDV HV NFD+P+  E+Y+HRIGRTGRAG  G A + V +E  + +  IE
Sbjct: 300 TDVLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFVTRESRRTMSDIE 359

Query: 362 KLIEKKVDWLNGDLSSLNPP-LEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           KLI K V  +  +   L+   LEK                       +R      +K   
Sbjct: 360 KLIGKNVPLMELETYELDMTVLEKGKKGAPKKGGYKGNKGSGRPAGAKRSDKRGGEKRDF 419

Query: 421 PLKESEKISKLQQDIQENDADSLGFRG 447
             +   +      +       + G R 
Sbjct: 420 ERRSDSRAEGRSDNRPGRGKRAEGKRS 446


>gi|260790063|ref|XP_002590063.1| hypothetical protein BRAFLDRAFT_123431 [Branchiostoma floridae]
 gi|229275251|gb|EEN46074.1| hypothetical protein BRAFLDRAFT_123431 [Branchiostoma floridae]
          Length = 403

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   AQ+G GKTA+F + +L 
Sbjct: 31  TFDSMGLREDLLRGIYAYGFEKPSAIQQRAIKPIVKGRDVIAQAQSGVGKTATFSISILQ 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     V+    L+L PTRELA Q+       G   ++     IGG       +KL+ 
Sbjct: 91  CLDIQMREVQA---LVLSPTRELATQIQKVILALGDYMSVQCHSCIGGTNVGEDIRKLDY 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 148 GQHVVSGTPGRVFDMIRRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 208 LLSATLPHEILEMTTKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  ++++ 
Sbjct: 266 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGASRVLIT 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 326 TDVWARGIDVPQVSLIINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIE 385

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 386 QYYSTQIDEMPMNVADL 402


>gi|90022676|ref|YP_528503.1| ATP-dependent RNA helicase DeaD [Saccharophagus degradans 2-40]
 gi|89952276|gb|ABD82291.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 595

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 160/460 (34%), Positives = 251/460 (54%), Gaps = 32/460 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA LGL+  ++ A+ D GY  P+PIQ K+IP +L   D+ G AQTGTGKTA+F LP+L 
Sbjct: 7   NFAQLGLNEHILKALTDVGYETPSPIQAKSIPELLAGRDILGQAQTGTGKTAAFALPILN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+  +   + P+ L+L PTRELA QVA+ F+ Y  +      L I  G  ++ Q + L+
Sbjct: 67  NLDLSQ---KAPQVLVLAPTRELAIQVAEAFQSYAHHLPGFHILPIYGGQGYDQQIRALK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  +G L ++ +++LV+DEAD ML MGFI  ++ + +  P TRQ 
Sbjct: 124 RGVHVIVGTPGRVMDHMRKGTLKLDQLKVLVLDEADEMLRMGFIDDVEWVLTQTPPTRQI 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+ KV+  +L +P  I++   + TA+TI   +      +           +
Sbjct: 184 ALFSATMPKEIAKVANKYLNDPALIKIEVKTQTADTIRQRYWGVSGHHKLDATTRILEAE 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M   IIF   K   + L   L  +G+S  A++G+I Q  R + +   K+G I ++V
Sbjct: 244 EFDAM---IIFVRTKTTTIELAEKLAARGYSSAALNGDISQNLRERTVEKLKKGQIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P  +E Y+HRIGRTGRAGR G+A   VA  +++ +  I
Sbjct: 301 ATDVAARGLDVDRISHVLNYDIPYDSEAYVHRIGRTGRAGRSGEAILFVAPREMRMLRTI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK--------- 411
           EK   K ++ +        P  + I+  + +  ++      KS G +  +K         
Sbjct: 361 EKATRKPIELMKM------PSTDDINQIRVDRFKQKILDAAKSPGLEFFRKLVTEMQHDN 414

Query: 412 ----------NYSSQKSHIPLKESEKISKLQQDIQENDAD 441
                          +   PL   ++  + Q++ +E D D
Sbjct: 415 ELDTADIAAALALLYQGDQPLLLEDRPQRQQREFKERDGD 454


>gi|83647393|ref|YP_435828.1| superfamily II DNA/RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83635436|gb|ABC31403.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 453

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 165/455 (36%), Positives = 260/455 (57%), Gaps = 16/455 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  ++ A+ + GY  P+PIQ++ IP+VL+  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFASLGLSAPILDAISEQGYASPSPIQLQAIPVVLEGKDVMAAAQTGTGKTAAFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L KG   R    R LIL PTRELAAQV +    Y     L   ++ GG+    Q  +L
Sbjct: 61  ERLSKGDRARSNQARALILTPTRELAAQVGECVSIYSSKLPLRSTVVFGGVKINPQMMRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DV++ TPGR+LD +N+  +   ++E+LV+DEADRMLDMGFI  I+ I  ++P  RQ
Sbjct: 121 RRGVDVIVATPGRLLDLYNQNAVRFQDLEVLVLDEADRMLDMGFIHDIRKILDILPKRRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +++++K+++  + NP  I V+ P++TA+T+       +    K+ + L   L
Sbjct: 181 NLMFSATFSNDIRKLAKELVNNPVEISVSPPNTTAKTV---KQWIHPVDKKQKSALLTQL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     ++F   K     L   L  +G +  AIHG+  Q +R K L++FK G++Q++
Sbjct: 238 IRDNNWDQALVFSRTKHGANRLTRQLCAKGINAAAIHGDKSQNARTKALADFKTGSVQIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V NFD+P  AE+Y+HRIGRTGRAG  G+A +LV+ ++ K +  
Sbjct: 298 VATDIAARGIDIDQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGQAVSLVSADEFKLLAD 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDI----------AQHNHARKNNPIPQKSTGFD 407
           IE+LI+K++  + + G       P  ++             +   + +     +K     
Sbjct: 358 IERLIQKRLPREEIEGFEPEQRLPESRLPTQPVKARKPKKPKAAKSGEQREQDRKGEKKG 417

Query: 408 RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADS 442
            R+   +   ++ P ++  + +   +     +A S
Sbjct: 418 PRQDGAARNNANAPRRQRRRGTGAGRPAPRKEAKS 452


>gi|317479221|ref|ZP_07938356.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
 gi|316904509|gb|EFV26328.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
          Length = 425

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 163/419 (38%), Positives = 241/419 (57%), Gaps = 9/419 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY  PTPIQ K+IP++LQ  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MTFENLNLIEPILKALQKEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K   R    + LIL PTRELA Q+ + F  YGK   L  A++ GG+  + Q  +L+
Sbjct: 61  QKLYKTDNRKS-IKALILTPTRELAIQIGECFSAYGKYTGLRHAVIFGGVGQKPQTDELK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +L+ TPGR+ D  N+G + +  +E  V+DEADRMLDMGFI  I+ I  L+P  RQT
Sbjct: 120 RGVQILVATPGRLQDLVNQGFINLKALEFFVLDEADRMLDMGFIHDIRRILKLLPAKRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++ ++ + L +P+++EV   SST +TI         +  K   +      
Sbjct: 180 LFFSATMPPEIETLANSMLTHPEKVEVTPASSTVDTISQSVYFVEKKEKKDLLIHLL--- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +++ +IF   K     L  +L K G    AIHGN  Q +R + L+ FK   +++++
Sbjct: 237 KNPAIESVLIFTRTKYGADKLARTLSKSGIRAEAIHGNKSQNARQRALTGFKNHELRVLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+++PN  E Y+HRIGRTGRAG  G A +    E++ ++  I
Sbjct: 297 ATDIAARGIDVDQLSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCESEELPYLKDI 356

Query: 361 EKLIEKKVDWLN--GDLSSLNPPLEKIDIAQHNHARKNNPIPQKST---GFDRRKKNYS 414
           +KLI K +  +     +++     +KI   +     K N I + S     F RRKK  S
Sbjct: 357 QKLIGKSIPVIKEHPFVTADGLKAQKIKTEEIKAKTKENKIYRGSRTNGDFWRRKKQTS 415


>gi|294055756|ref|YP_003549414.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615089|gb|ADE55244.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 406

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 163/411 (39%), Positives = 249/411 (60%), Gaps = 9/411 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL+P ++ AV +AGY +PTPIQ   IP ++   DV G AQTGTGKTA+F LP L 
Sbjct: 3   TFKDLGLAPAILSAVEEAGYTEPTPIQAGAIPHIIDGRDVIGSAQTGTGKTAAFALPALH 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +   PR L+L PTRELAAQV + FEKYGK+  L  AL+ GG+ +  Q ++LE 
Sbjct: 63  RL-GKHQKGAAPRCLVLGPTRELAAQVKEQFEKYGKDAQLKCALIHGGVGYGRQRQELEA 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GADV+I TPGR++DH  +    + N+++L++DE DRMLDMGFI  ++ I        +  
Sbjct: 122 GADVVIATPGRLIDHVQQRTADLRNVDLLILDEVDRMLDMGFIDDVKKIIKFCSKQGRQT 181

Query: 182 -LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT+++E++++    L++P  + +    + AET++H      A       +      
Sbjct: 182 LLFSATVSEEIKRLIARSLKDPVEVAIAVKITPAETVKHEVYPVGAMQKFDLLVAL---I 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               + + IIFC  K     +   L++  + V A+H +++Q++R + L +FK+G I+++V
Sbjct: 239 ESMEVDSMIIFCRMKIGADRITRWLQQHKYKVAAMHADLNQKARNRALQDFKDGNIKILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI +V HV N+DVP   E+Y+HRIGRTGRA R G A T++A ++   +DAI
Sbjct: 299 ATDIASRGLDIANVTHVINYDVPEHPEDYVHRIGRTGRAQREGDAATILAPDEESKLDAI 358

Query: 361 EKLIEKKVDWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           EK I++ +     +  S ++ P  + D +     R+ N     S+ F RR+
Sbjct: 359 EKFIDQLIPQRKLESFSYIHQPRIREDSSSKPKRRRRNSA---SSKFGRRR 406


>gi|268318827|ref|YP_003292483.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii
           FI9785]
 gi|262397202|emb|CAX66216.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii
           FI9785]
          Length = 484

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 147/394 (37%), Positives = 230/394 (58%), Gaps = 15/394 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+++ L P+++ A+  +G+ + TPIQ KTIPLVL+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+K    ++     I+EPTRELA Q  +   + G++    V ++ GG     Q + L+
Sbjct: 61  QNLDKQHDSIQAI---IIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGR+LDH  RG + ++ I+ +V+DEAD MLDMGFI  I++I        QT
Sbjct: 118 QTPAILVGTPGRLLDHLKRGTIDISKIKTIVLDEADEMLDMGFIQDIESILKYASSKHQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + ++ E F+ +P+ +++     TA  I             +   +   L 
Sbjct: 178 LLFSATMPKPILRIGEKFMNDPEIVKIKGKELTANLI---DQYFVRAKENEKFDILCRLI 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF   K+ V  L   L+ +G++   IHG++ Q  RM +L  F++G + ++V
Sbjct: 235 DVQNPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  I
Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTI 354

Query: 361 EKLIEKKV---------DWLNGDLSSLNPPLEKI 385
           E+L  KK+         +   G LS+ N  + ++
Sbjct: 355 EQLTHKKMMPLKPPTDEEAFKGQLSAANKKVAEL 388


>gi|294936207|ref|XP_002781657.1| eukaryotic translation initiation factor, putative [Perkinsus
           marinus ATCC 50983]
 gi|239892579|gb|EER13452.1| eukaryotic translation initiation factor, putative [Perkinsus
           marinus ATCC 50983]
          Length = 395

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 203/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL   ++  +   G+ +P+ +Q + I  +++  DV   +Q+GTGKT  F L  L 
Sbjct: 23  SFDALGLKEDLLRGIYQYGFERPSAVQQRAILPIVKGRDVVVQSQSGTGKTCVFALGALQ 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++        P+ LIL PTRELA Q        G   N+ V   +GG       + LE 
Sbjct: 83  TVKPTERD---PQVLILSPTRELAEQSQKVCLALGDYMNVQVHCCVGGKKLTDDIRALEA 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+    ++  L   ++++LV+DEAD MLD GF   + +I   +P + Q +
Sbjct: 140 GVHIVSGTPGRVYHMISQRHLSTRHLKMLVLDEADEMLDRGFKEQVYDIYRYLPPSTQCV 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM +E+ +++ NF+ NP R+ V     T E I+  FVA   +  K   L       
Sbjct: 200 LVSATMPNEILEMTNNFMNNPFRVLVKRDELTLEGIKQFFVAVEKEQWKFDTLCDL--YD 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L + + +  F+V ++HG++ Q+ R  I+  F+ G  ++++ 
Sbjct: 258 TLTITQAVIFCNTKQKVDWLTNKMREAKFTVVSMHGDMPQKERDAIMQKFRSGQARVLIT 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+  RGLD+  V  V  +D+PN  E YIHRIGR+GR GR G A   V ++D++ +  IE
Sbjct: 318 TDIWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKEDDVRILRDIE 377

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 378 QYYSTQIDEMPMNVADL 394


>gi|227888879|ref|ZP_04006684.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii
           ATCC 33200]
 gi|227850572|gb|EEJ60658.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii
           ATCC 33200]
          Length = 484

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 146/394 (37%), Positives = 230/394 (58%), Gaps = 15/394 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+++ L P+++ A+  +G+ + TPIQ KTIPLVL+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+K    ++     I+EPTRELA Q  +   + G++    V ++ GG     Q + L+
Sbjct: 61  QNLDKQHDSIQAI---IIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGR+LDH  RG + ++ ++ +V+DEAD MLDMGFI  I++I        QT
Sbjct: 118 QTPAILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILKYASSKHQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + ++ E F+ +P+ +++     TA  I             +   +   L 
Sbjct: 178 LLFSATMPKPILRIGEKFMNDPEIVKIKGKELTANLI---DQYFVRAKENEKFDILCRLI 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF   K+ V  L   L+ +G++   IHG++ Q  RM +L  F++G + ++V
Sbjct: 235 DVQNPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  I
Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTI 354

Query: 361 EKLIEKKV---------DWLNGDLSSLNPPLEKI 385
           E+L  KK+         +   G LS+ N  + ++
Sbjct: 355 EQLTHKKMMPLKPPTDEEAFKGQLSAANKKVAEL 388


>gi|317008898|gb|ADU79478.1| ATP-dependent RNA helicase [Helicobacter pylori India7]
          Length = 492

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 141/392 (35%), Positives = 218/392 (55%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 81  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +   + T   I   F         +  +       
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL---D 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 254 TQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ +++     + + N  ++ +  A+ + A
Sbjct: 374 KEIDSEIELFEIPIINENQIIKTLHDAKVSEA 405


>gi|227522395|ref|ZP_03952444.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus hilgardii
           ATCC 8290]
 gi|227090453|gb|EEI25765.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus hilgardii
           ATCC 8290]
          Length = 502

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 146/384 (38%), Positives = 227/384 (59%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+  +G+ + TPIQ +TIP+VL   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLSDSLLSAISSSGFEEATPIQAETIPMVLNGEDVIGQAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+     V+    LI+ PTRELA Q  +   + GK+    V ++ GG     Q   L+
Sbjct: 61  QHLDFNNPNVQ---ALIISPTRELAIQTQEEVYRLGKDEKAKVQVVYGGADIRRQINSLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILDH +R  L + +++ LV+DEAD ML+MGF+  I++I    P  RQT
Sbjct: 118 SHPQIIVGTPGRILDHISRHTLKLEHVKTLVLDEADEMLNMGFLDDIESIIKQTPSDRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  ++++V   F+++P ++++     T + I+  +V                  
Sbjct: 178 LLFSATMPPQIKRVGVQFMKDPHQVKIKAKELTTDLIDQYYVRVKEYEKFDTMTR---FF 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+FC  K+ V  +   LE +G++   +HG++ Q  R +I++ FK+G + ++V
Sbjct: 235 DVQDPEVTIVFCRTKRRVDEVSKGLEARGYNAAGLHGDLTQARRTQIMNEFKQGKVDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  V HV+N+D+P   + Y+HR+GRTGRAG+HG + T     ++ ++  I
Sbjct: 295 ATDVAARGIDISGVTHVYNYDIPQDPDGYVHRVGRTGRAGKHGVSITFTTPNEMDYLHEI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           EKL   KV  L      L PP E+
Sbjct: 355 EKL--TKVRMLP-----LKPPTEQ 371


>gi|227509297|ref|ZP_03939346.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227512309|ref|ZP_03942358.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
 gi|227084484|gb|EEI19796.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
 gi|227191227|gb|EEI71294.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 502

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 146/384 (38%), Positives = 227/384 (59%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+  +G+ + TPIQ +TIP+VL   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLSDSLLSAISSSGFEEATPIQAETIPMVLNGEDVIGQAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+     V+    LI+ PTRELA Q  +   + GK+    V ++ GG     Q   L+
Sbjct: 61  QHLDFNNPNVQ---ALIISPTRELAIQTQEEVYRLGKDEKAKVQVVYGGADIRRQINSLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILDH +R  L + +++ LV+DEAD ML+MGF+  I++I    P  RQT
Sbjct: 118 SHPQIIVGTPGRILDHISRHTLKLEHVKTLVLDEADEMLNMGFLDDIESIIKQTPSDRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  ++++V   F+++P ++++     T + I+  +V                  
Sbjct: 178 LLFSATMPPQIKRVGVQFMKDPHQVKIKAKELTTDLIDQYYVRVKEYEKFDTMTR---FF 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+FC  K+ V  +   LE +G++   +HG++ Q  R +I++ FK+G + ++V
Sbjct: 235 DVQDPEVTIVFCRTKRRVDEVSKGLEARGYNAAGLHGDLTQARRTQIMNEFKQGKVDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  V HV+N+D+P   + Y+HR+GRTGRAG+HG + T     ++ ++  I
Sbjct: 295 ATDVAARGIDISGVTHVYNYDIPQDPDGYVHRVGRTGRAGKHGVSITFTTPNEMDYLHEI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           EKL   KV  L      L PP E+
Sbjct: 355 EKL--TKVRMLP-----LKPPTEQ 371


>gi|241668567|ref|ZP_04756145.1| ATP-dependent RNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877101|ref|ZP_05249811.1| ATP-dependent RNA helicase rhlE [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843122|gb|EET21536.1| ATP-dependent RNA helicase rhlE [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 445

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 167/444 (37%), Positives = 259/444 (58%), Gaps = 11/444 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+P +  A+   GY KPTPIQ K IPLVL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MQFSDLGLNPLICSALEKKGYTKPTPIQAKAIPLVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVVFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  L  +++   V+DEADRMLDMGFI  ++ I  L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQNALKFDSLNTFVLDEADRMLDMGFINDLKRIHKLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E+  ++  FL NP+ +  +  ++T + I                +     
Sbjct: 181 TLMFSATFSPEITSLANEFLDNPQSVSADVVNTTVKKITQKIYTLDKSTKINALISL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   ++F   K     +   L   G +  AIHGN  Q +R K L++FK   I ++
Sbjct: 238 IKDQDLHQVLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFKSKDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+PN AE+Y+HRIGRTGRAG+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQDGLAISLVSADEVESLSN 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF-DRRKKNYSSQ 416
           IE LI   +  + L G  ++ N P+  +  ++   A+K + +   +T   ++  KN S +
Sbjct: 358 IEHLIGHLLPREELEGFEATHNVPITSM--SRKTKAKKIDEVKIIATKRANKNNKNTSQK 415

Query: 417 KSHIPLKESEKISKLQQDIQENDA 440
           KS    K+  K  K++Q I +N +
Sbjct: 416 KSSNHNKDFAK--KIKQKIHQNKS 437


>gi|294877852|ref|XP_002768159.1| eukaryotic translation initiation factor, putative [Perkinsus
           marinus ATCC 50983]
 gi|239870356|gb|EER00877.1| eukaryotic translation initiation factor, putative [Perkinsus
           marinus ATCC 50983]
          Length = 395

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 203/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL   ++  +   G+ +P+ +Q + I  +++  DV   +Q+GTGKT  F L  L 
Sbjct: 23  SFDALGLKEDLLRGIYQYGFERPSAVQQRAILPIVKGRDVVVQSQSGTGKTCVFALGALQ 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++        P+ LIL PTRELA Q        G   N+ V   +GG       + LE 
Sbjct: 83  TVKTTERD---PQVLILSPTRELAEQSQKVCLALGDYMNVQVHCCVGGKKLTDDIRALEA 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+    ++  L   ++++LV+DEAD MLD GF   + +I   +P + Q +
Sbjct: 140 GVHIVSGTPGRVYHMISQRHLSTRHLKMLVLDEADEMLDRGFKEQVYDIYRYLPPSTQCV 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM +E+ +++ NF+ NP R+ V     T E I+  FVA   +  K   L       
Sbjct: 200 LVSATMPNEILEMTNNFMNNPFRVLVKRDELTLEGIKQFFVAVEKEQWKFDTLCDL--YD 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L + + +  F+V ++HG++ Q+ R  I+  F+ G  ++++ 
Sbjct: 258 TLTITQAVIFCNTKQKVDWLTNKMREAKFTVVSMHGDMPQKERDAIMQKFRSGQARVLIT 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+  RGLD+  V  V  +D+PN  E YIHRIGR+GR GR G A   V ++D++ +  IE
Sbjct: 318 TDIWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKEDDVRILRDIE 377

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 378 QYYSTQIDEMPMNVADL 394


>gi|301301069|ref|ZP_07207229.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851339|gb|EFK79063.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 492

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 169/485 (34%), Positives = 255/485 (52%), Gaps = 49/485 (10%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ AV  +G+ + TPIQ +TIPLVL  +DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFGELGLDKSLLKAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-L 119
             L+    +++     I+ PTRELA Q  +     GK     V ++ GG     Q K+  
Sbjct: 61  QQLDLDLRQIQAV---IISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLE 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +L+ TPGR+LDH  RG + + +++ L++DEAD MLDMGF+  I+ I   VP  RQ
Sbjct: 118 QHTPHILVGTPGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E+ K+ E F+ NP+ +++     T + ++  FV T               
Sbjct: 178 TLLFSATMPKEILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRL--- 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  I+F   K+ V  L   LE +G++   IHG++ Q+ RM +L  FK G + ++
Sbjct: 235 IDVQAPELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG HG + T V   ++ ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRV 354

Query: 360 IEKLIEKKVDWLNG----------------DLSSL-------------NPPLEKIDIAQH 390
           IEKL +K++D L                  D+  L                LE+ D  + 
Sbjct: 355 IEKLTKKRMDPLKPPTQDEAFIGQVSSALDDIKDLIADTDTERYEAQAQALLEQYDAVEV 414

Query: 391 NHARKNNPIPQKSTG----------FDRRKKNYSS---QKSHIPLKESEKISKLQQDIQE 437
             A  NN   + ++             RRKK   +   ++ +   K S++ +K  ++  +
Sbjct: 415 VAAFLNNMTKKDASDVPVKITPEKPLPRRKKGRRNGNYRRGNDNFKRSKRFNKHDRNNHD 474

Query: 438 NDADS 442
           N   S
Sbjct: 475 NKRRS 479


>gi|304411082|ref|ZP_07392698.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307301795|ref|ZP_07581553.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304350617|gb|EFM15019.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306913833|gb|EFN44254.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 515

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 178/461 (38%), Positives = 261/461 (56%), Gaps = 8/461 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ + IP VLQ  DV   AQTGTGKTA F LPML
Sbjct: 1   MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   +    R L+L PTRELAAQVA++ E YGKN  L  A++ GG+P   Q  KL
Sbjct: 61  ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 RHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++++++  + NP  I V   ++ A T++               +     
Sbjct: 181 NLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  +  ++F   K     L  SLE  G    AIHGN  Q +R K L++FK G  +++
Sbjct: 238 IKQNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+IK ++ 
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLND 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+LI + +D     +   N  L +  +     +   +   +++T    +  +       
Sbjct: 358 IERLINRVLDR--EMVEGFNHVLPESRLGGGGKSSGKSVPSRRNTRSSNQPSSRDGAPRS 415

Query: 420 IPLKESEKISKLQQDIQENDADSL--GFRGNMPAFMLPKNR 458
              K+ ++   + +  + ND +    G   + P     K R
Sbjct: 416 AEHKDGQRSGDVARGHKPNDKNPRHSGEASSAPRADSAKPR 456


>gi|217972086|ref|YP_002356837.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217497221|gb|ACK45414.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 515

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 178/461 (38%), Positives = 261/461 (56%), Gaps = 8/461 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ + IP VLQ  DV   AQTGTGKTA F LPML
Sbjct: 1   MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   +    R L+L PTRELAAQVA++ E YGKN  L  A++ GG+P   Q  KL
Sbjct: 61  ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 RHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++++++  + NP  I V   ++ A T++               +     
Sbjct: 181 NLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  +  ++F   K     L  SLE  G    AIHGN  Q +R K L++FK G  +++
Sbjct: 238 IKQNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+IK ++ 
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLND 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+LI + +D     +   N  L +  +     +   +   +++T    +  +       
Sbjct: 358 IERLINRVLDR--EMVEGFNHVLPESRLGGGGKSSGKSVPSRRNTRSSNQPSSRDGAPRS 415

Query: 420 IPLKESEKISKLQQDIQENDADSL--GFRGNMPAFMLPKNR 458
              K+ ++   + +  + ND +    G   + P     K R
Sbjct: 416 AEHKDGQRSGDVARGHKPNDKNPRHSGEASSAPRADSAKPR 456


>gi|116493289|ref|YP_805024.1| superfamily II DNA/RNA helicase [Pediococcus pentosaceus ATCC
           25745]
 gi|116103439|gb|ABJ68582.1| Superfamily II DNA and RNA helicase [Pediococcus pentosaceus ATCC
           25745]
          Length = 526

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 153/388 (39%), Positives = 228/388 (58%), Gaps = 13/388 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ AVLD GY +PTPIQ +TIP VL+  D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MKFTELGLDEDILKAVLDNGYDEPTPIQAETIPGVLEGKDIIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++     I+ PTRELAAQ      K GK     V ++ GG     Q   L+
Sbjct: 61  QNVDLDNPNIQAI---IISPTRELAAQTQAEIFKLGKYKKAKVQVVYGGSDIRRQINALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + +++++ LV+DEAD MLDMGF+P I++I    P  RQT
Sbjct: 118 SHPQIVVGTPGRLLDHIGRKTIRLDHVKTLVLDEADDMLDMGFLPDIEHIIEQTPSERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+   F+ +PK+I V +   TA+ ++  +V +          +   + 
Sbjct: 178 LLFSATMPAPIKKIGVKFMTDPKQITVKSKELTADLVDQYYVRSKEFEK---FDILTRVL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  +IF   K+ V  +   L  +G++   IHG++ Q+ RM IL  F+EG + ++V
Sbjct: 235 DVQAPKLAVIFGRTKRRVDEVSKGLVTRGYNAAGIHGDLTQQRRMSILRQFREGQLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG  G + T V   ++ ++  +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGATGTSVTFVTNWEMDYLRDV 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           E L +K+       L  + PP E+   A
Sbjct: 355 EHLTKKR-------LLPMKPPTEEEAFA 375


>gi|196014693|ref|XP_002117205.1| DEAD box ATP-dependent RNA helicase [Trichoplax adhaerens]
 gi|190580170|gb|EDV20255.1| DEAD box ATP-dependent RNA helicase [Trichoplax adhaerens]
          Length = 401

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   +V  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L 
Sbjct: 29  SFDQMGLKEDLVRGIYAYGFEKPSAIQQRSIKPIIEGRDVIAQAQSGTGKTATFSISVLQ 88

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++      +    LI+ PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 89  AIDTQLRETQA---LIMSPTRELAVQIQKVILALGDYMNVQCHACIGGTNVGEDIRKLDY 145

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  +PGR+ D   R  L   +I++LV+DEAD ML+ GF   I ++   +P + Q +
Sbjct: 146 GQHIVSGSPGRVFDMIRRRNLRTRSIKMLVLDEADEMLNQGFKEQIYDVYRYLPPSTQVV 205

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  ++ +++  F+  P RI V     T E I+  FVA   +  K   L       
Sbjct: 206 LLSATLPHDILEMTRKFMTEPMRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  ++++ 
Sbjct: 264 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGASRVLIT 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 324 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKSDDIRILRDIE 383

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  ++S L
Sbjct: 384 QYYSTQIDEMPMNVSDL 400


>gi|126175663|ref|YP_001051812.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125998868|gb|ABN62943.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 526

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 174/443 (39%), Positives = 256/443 (57%), Gaps = 6/443 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ + IP VLQ  DV   AQTGTGKTA F LPML
Sbjct: 12  MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 71

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   +    R L+L PTRELAAQVA++ E YGKN  L  A++ GG+P   Q  KL
Sbjct: 72  ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 131

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 132 RHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 191

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++++++  + NP  I V   ++ A T++               +     
Sbjct: 192 NLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQL--- 248

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  +  ++F   K     L  SLE  G    AIHGN  Q +R K L++FK G  +++
Sbjct: 249 IKQNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVL 308

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+IK ++ 
Sbjct: 309 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLND 368

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+LI + +D     +   N  L +  +     +   +   +++T    +  +       
Sbjct: 369 IERLINRVLDR--EMVEGFNHVLPESRLGGGGKSSGKSVPSRRNTRSSNQPSSRDGAPRS 426

Query: 420 IPLKESEKISKLQQDIQENDADS 442
              K+ ++   + +  + ND + 
Sbjct: 427 AEHKDGQRSGDVARGHKPNDKNP 449


>gi|298207628|ref|YP_003715807.1| putative ATP-dependent RNA helicase [Croceibacter atlanticus
           HTCC2559]
 gi|83850264|gb|EAP88132.1| putative ATP-dependent RNA helicase [Croceibacter atlanticus
           HTCC2559]
          Length = 424

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 173/427 (40%), Positives = 245/427 (57%), Gaps = 18/427 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL +   ++ ++ + GY KPT IQ ++IPL+L+  DV G AQTGTGKT +F +P++
Sbjct: 1   MTFEDLNIISPILKSLDEQGYEKPTSIQARSIPLILKGEDVLGSAQTGTGKTGAFAIPII 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L       +  R +   I+ PTRELA Q+ +NF  YGK  +L   ++ GG+P  AQ  
Sbjct: 61  QHLANDLENAKGKRKILSLIVTPTRELAIQIGENFSAYGKYTSLKSTVIFGGVPQRAQTN 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G DVLI TPGR+LD  ++G + + +++  V+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLKSGVDVLIATPGRLLDLMDQGYISLKDVKYFVLDEADRMLDMGFIHDIKKLLTKLPKN 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+L FSATM   +  +S   L+NPK++EVN  SSTAETI+     T          L  
Sbjct: 181 RQSLFFSATMPKNILTLSNQILKNPKKVEVNPVSSTAETIQQYLYTTNKTNK---GDLLL 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +     +   ++F   K         L K+     AIHGN  Q  R K L  FK+G I+
Sbjct: 238 HILEDPKIDQVLVFSKTKHGADRTVRKLLKKKIKSAAIHGNKSQNQRQKALKAFKDGNIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MVA+D+AARG+DI  + +V N+D+PN  E Y+HRIGR GRAG  G A ++   E+I+ I
Sbjct: 298 VMVATDIAARGIDIDKLEYVINYDIPNEPETYVHRIGRCGRAGEDGIAISIGEPEEIQFI 357

Query: 358 DAIEKLIEKKVDWLNGD-LSSLNPPL----------EKIDIAQHNHA-RKNNPIPQKSTG 405
             IEKLI++K+  +  +     + P+          EK  I Q   A RK N   QK  G
Sbjct: 358 KDIEKLIKQKITVIKDNPFPQTDKPMTTSEKKAAEKEKQRIKQEFFANRKKNKGSQKGGG 417

Query: 406 FDRRKKN 412
            +RRKK 
Sbjct: 418 NNRRKKK 424


>gi|254425384|ref|ZP_05039102.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
 gi|196192873|gb|EDX87837.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
          Length = 570

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 157/463 (33%), Positives = 249/463 (53%), Gaps = 23/463 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L P V+ A+ DAGY  PTPIQ  TIP +L   D+ G AQTGTGKTA+F LP+L+
Sbjct: 7   SFQTLSLIPPVLKALEDAGYETPTPIQALTIPPILDGRDIIGQAQTGTGKTAAFALPILS 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++   +    P+ L+L PTRELA QVA+ F+ Y  +      L I  G  +  Q K+L 
Sbjct: 67  QIDISNSD---PQALVLAPTRELALQVAEAFQSYASHLKGFHVLPIYGGQSYHVQLKQLR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R A V++ TPGR++DH  RG L ++N++ LV+DEAD ML MGFI  ++ + S  P +RQ 
Sbjct: 124 RAAHVIVGTPGRVIDHIKRGTLKLDNLKFLVLDEADEMLRMGFIEDVEWVISQTPQSRQV 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++K+++ +L +P+ + V   S TA+TI   F      +          ++
Sbjct: 184 ALFSATMPAAIRKIAQKYLNSPQELAVKNQSKTADTIRQRFWPVSGYHKLDALTRILEVE 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M   I+F   K   V L   LE +G++   + G++ Q  R + +   ++G + ++V
Sbjct: 244 DFDGM---IVFVRTKVATVELSEKLEARGYNTAPLSGDVPQNQRERTVERLRQGKLDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P   E Y+HRIGRTGRAGR G+A   V   + + + +I
Sbjct: 301 ATDVAARGLDVERISHVINYDMPYDPEAYVHRIGRTGRAGREGEAILFVTPREKRLLSSI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+   ++++ +    + +   +    I +      N    + S  F +  + Y  +    
Sbjct: 361 ERSTRQRIERMEMPSTEV---VNDQRIERFKQKITNALAQEDSAFFTQILEQYEQEHDVP 417

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
            ++ +  ++KL              +G+ P  +  K + K  D
Sbjct: 418 AIEIAGALAKL-------------LQGDEPLLLEEKTKPKRRD 447


>gi|152974078|ref|YP_001373595.1| DEAD/DEAH box helicase domain-containing protein [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152022830|gb|ABS20600.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 511

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 152/382 (39%), Positives = 229/382 (59%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ +V   G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L 
Sbjct: 15  TFRELGLSDSLLQSVEKMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLE 74

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+     ++ PTRELA QV +   K G++  + +  + GG     Q + L++
Sbjct: 75  KVDTNKEMVQGI---VIAPTRELAIQVGEELYKIGQHKRVRILPIYGGQDINRQIRALKK 131

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTL
Sbjct: 132 RPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 191

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++E F+  P+ I+V     T   I            KK   +   L  
Sbjct: 192 LFSATMPEPIRRIAERFMTEPQHIKVKAKEVTMPNI---QQFYLEVQEKKKFDVLTRLLD 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA
Sbjct: 249 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A   V   ++  +  IE
Sbjct: 309 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGLAMLFVTPREMGQLKNIE 368

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++K+D +     +L+  LE
Sbjct: 369 RTTKRKMDRMKA--PTLDEALE 388


>gi|312978402|ref|ZP_07790144.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           crispatus CTV-05]
 gi|310894745|gb|EFQ43817.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           crispatus CTV-05]
          Length = 495

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 148/396 (37%), Positives = 232/396 (58%), Gaps = 16/396 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+  ++ A+  +G+ + TPIQ +TIPL LQ  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-L 119
            +++K   + +  + +I+EPTRELA Q  +   + G++ +  V ++ GG     Q +   
Sbjct: 61  QMIDK---KEKAIQAVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLK 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LDH  R  + ++ ++ +V+DEAD MLDMGFI  I++I       +Q
Sbjct: 118 HHVPSILVGTPGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + ++ E F+ +P+ + +     TA+ IE  FV                 
Sbjct: 178 TLLFSATMPKPILRIGEKFMDHPEIVRIKAKELTADLIEQYFVRAKESEKFDIMCRL--- 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++F   K+ V  L   L+ +G++   IHG++ Q  RM +L  F+EG + ++
Sbjct: 235 IDVQGPDLALVFGRTKRRVDELTRGLQARGYNAAEIHGDLSQARRMSVLKRFREGKLDIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           IE+L +KK       +S L PP +  D A H   ++
Sbjct: 355 IEQLTKKK-------MSPLRPPTD--DQALHGQLKQ 381


>gi|262047224|ref|ZP_06020182.1| helicase [Lactobacillus crispatus MV-3A-US]
 gi|260572469|gb|EEX29031.1| helicase [Lactobacillus crispatus MV-3A-US]
          Length = 494

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 148/396 (37%), Positives = 232/396 (58%), Gaps = 16/396 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+  ++ A+  +G+ + TPIQ +TIPL LQ  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-L 119
            +++K   + +  + +I+EPTRELA Q  +   + G++ +  V ++ GG     Q +   
Sbjct: 61  QMIDK---KEKAIQAVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLK 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LDH  R  + ++ ++ +V+DEAD MLDMGFI  I++I       +Q
Sbjct: 118 HHVPSILVGTPGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + ++ E F+ +P+ + +     TA+ IE  FV                 
Sbjct: 178 TLLFSATMPKPILRIGEKFMDHPEIVRIKAKELTADLIEQYFVRAKESEKFDIMCRL--- 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++F   K+ V  L   L+ +G++   IHG++ Q  RM +L  F+EG + ++
Sbjct: 235 IDVQGPDLALVFGRTKRRVDELTRGLQARGYNAAEIHGDLSQARRMSVLKRFREGKLDIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           IE+L +KK       +S L PP +  D A H   ++
Sbjct: 355 IEQLTKKK-------MSPLRPPTD--DQALHGQLKQ 381


>gi|331009646|gb|EGH89702.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 625

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 179/490 (36%), Positives = 269/490 (54%), Gaps = 45/490 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F  P+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFAPPIL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L          R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPP----LEKIDIAQHNHAR----KNN----- 397
            K + +IE++ ++K+   D +  D++++        E+ D+     AR    KNN     
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPAGDKNNGGRRD 417

Query: 398 -------------------PIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQEN 438
                              P  Q      R     S Q++  P        +   + +++
Sbjct: 418 KGKDKGKEKPATAAATGERPARQPREKKPREGTPRSEQRASQPSIPRPAADRAPDEFRDD 477

Query: 439 DADSLGFRGN 448
           + D+ G R +
Sbjct: 478 EVDNFGNRAD 487


>gi|300362413|ref|ZP_07058589.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri JV-V03]
 gi|300353404|gb|EFJ69276.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri JV-V03]
          Length = 485

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 145/394 (36%), Positives = 231/394 (58%), Gaps = 15/394 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+++ L P+++ A+  +G+ + TPIQ KTIPLVL+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+K    ++     ++EPTRELA Q  +   + G++    V ++ GG     Q + L+
Sbjct: 61  QNLDKQHDSIQAI---VIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGR+LDH  RG + ++ ++ +V+DEAD MLDMGFI  I++I +      QT
Sbjct: 118 QTPAILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILNYASSKHQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + ++ E F+ +P+ +++     TA  I             +   +   L 
Sbjct: 178 LLFSATMPKPILRIGEKFMHDPEIVKIKGKELTANLI---DQYFVRAKENEKFDILCRLI 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF   K+ V  L   L+ +G++   IHG++ Q  RM +L  F++G + ++V
Sbjct: 235 DVQNPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  I
Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTI 354

Query: 361 EKLIEKKV---------DWLNGDLSSLNPPLEKI 385
           E+L  KK+         +   G LS+ N  + ++
Sbjct: 355 EQLTHKKMMPLKPPTDEEAFKGQLSAANKKVTEL 388


>gi|225442260|ref|XP_002279117.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743075|emb|CBI35942.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 141/420 (33%), Positives = 221/420 (52%), Gaps = 17/420 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F D+GL   V+  +  AG+ +PTPIQ +  P+ L+  DV GIA+TG+GKT +++LP +
Sbjct: 100 MNFRDVGLPEYVMQEITKAGFAEPTPIQAQGWPMALKGRDVIGIAETGSGKTLAYLLPAI 159

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +           P  L+L PTRELA Q+     K+G +  +    + GG+P   Q + 
Sbjct: 160 IHVNAQPILAPGDGPIVLVLAPTRELAVQIQQEAAKFGASSRIKNTCIHGGVPKGPQIRD 219

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   R
Sbjct: 220 LQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDR 279

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL +SAT   E+++++  FL NP ++ + +    A       V   ++  K    L +L
Sbjct: 280 QTLYWSATWPKEVEQLARKFLYNPCKVVIGSADLKANHAIRQHVEIVSENQKY-NRLVKL 338

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+        +IF + KK    +   L   G+   +IHG+  Q  R  +LS FK G   +
Sbjct: 339 LEDIMDGGRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPI 398

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M A+D+AARGLD+ DV  V N+D P   E+Y+HRIGRTGRAG  G A+T     + +   
Sbjct: 399 MTATDVAARGLDVKDVKFVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAK 458

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +  ++E+    +  +L+++               R   P P    GF  R + + S ++
Sbjct: 459 ELITILEEAGQRVAPELAAM--------------GRGAPPPPSGHGGFRDRGRGHGSGRA 504


>gi|116628939|ref|YP_814111.1| superfamily II DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238853538|ref|ZP_04643910.1| cold-shock DEAD box protein A [Lactobacillus gasseri 202-4]
 gi|311111251|ref|ZP_07712648.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           gasseri MV-22]
 gi|116094521|gb|ABJ59673.1| Superfamily II DNA and RNA helicase [Lactobacillus gasseri ATCC
           33323]
 gi|238833834|gb|EEQ26099.1| cold-shock DEAD box protein A [Lactobacillus gasseri 202-4]
 gi|311066405|gb|EFQ46745.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           gasseri MV-22]
          Length = 485

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 145/394 (36%), Positives = 231/394 (58%), Gaps = 15/394 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+++ L P+++ A+  +G+ + TPIQ KTIPLVL+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+K    ++     ++EPTRELA Q  +   + G++    V ++ GG     Q + L+
Sbjct: 61  QNLDKQHDSIQAI---VIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGR+LDH  RG + ++ ++ +V+DEAD MLDMGFI  I++I +      QT
Sbjct: 118 QTPAILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILNYASSKHQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + ++ E F+ +P+ +++     TA  I             +   +   L 
Sbjct: 178 LLFSATMPKPILRIGEKFMHDPEIVKIKGKELTANLI---DQYFVRAKENEKFDILCRLI 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF   K+ V  L   L+ +G++   IHG++ Q  RM +L  F++G + ++V
Sbjct: 235 DVQNPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  I
Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTI 354

Query: 361 EKLIEKKV---------DWLNGDLSSLNPPLEKI 385
           E+L  KK+         +   G LS+ N  + ++
Sbjct: 355 EQLTHKKMMPLKPPTDEEAFKGQLSAANKKVTEL 388


>gi|251773001|gb|EES53557.1| putative ATP-dependent helicase [Leptospirillum ferrodiazotrophum]
          Length = 472

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 144/365 (39%), Positives = 218/365 (59%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ D  +  PTPIQ +TIP +++  DV G+AQTG+GKT  F+LP L
Sbjct: 1   MSFETLGLNPDLLRALSDLKHESPTPIQKQTIPPIIEGRDVLGVAQTGSGKTGGFLLPSL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              ++ +      + L+L PTRELA Q+  +  +YGK       LL+GG     Q   L 
Sbjct: 61  HRNKRAQGNRTRHQILVLSPTRELAGQIERSAREYGKYLRSRTVLLVGGTDMRRQIDFLR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R  D++I TPGR++DH  RG + ++++  +V+DEADRMLDMGF+P ++ I   +   RQT
Sbjct: 121 RPWDLVIATPGRLIDHMQRGTINLSHVHTVVLDEADRMLDMGFLPDVETILKALHPERQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLF+AT+   +Q +++ + ++P  I + T S+   +I+   VA      K   L   L +
Sbjct: 181 LLFTATLPARIQMLTKTYQKDPVLIRLETASAPPVSIDQEVVAISHGAQKWGLLKTILTE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q T    +IF   K+   +L + L  +GF   A+HG+  Q  R ++LS F+ G  +++V
Sbjct: 241 PQTTEGQTLIFTRTKRGAEDLANQLLAEGFPSDALHGDKSQSQRNRVLSKFRAGQTRILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V N+D+P   E+Y+HRIGRTGRAGR G+A +     D   +  I
Sbjct: 301 ATDVAARGLDIDTVTCVINYDLPQSPEDYVHRIGRTGRAGRSGRAISFCHPADRNLLRDI 360

Query: 361 EKLIE 365
           E+L+ 
Sbjct: 361 ERLLG 365


>gi|153940796|ref|YP_001391035.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum F str.
           Langeland]
 gi|152936692|gb|ABS42190.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum F str.
           Langeland]
 gi|295319091|gb|ADF99468.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum F str.
           230613]
          Length = 481

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 138/430 (32%), Positives = 240/430 (55%), Gaps = 15/430 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  LS +++ ++   GY  P+ +Q + IPL+L+  D+   ++TG+GKTA+F +P+ 
Sbjct: 4   LTFENYKLSDEILKSLGKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPVC 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE      + P+ L+L PTRELA Q+ +          L    + G  P   Q ++L+
Sbjct: 64  EKLEL---EEKDPQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRELK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR LDH  R  L +  I+  V+DEAD ML+MGFI  ++ +   +P  R T
Sbjct: 121 QRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRVT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ ++++ + + ++ NP+ I +N  + T +TI       Y    K    L Q + 
Sbjct: 181 MLFSATIPEKIENLCKKYMNNPQNININPENITTDTINQ---CYYEVEDKDKFSLLQKII 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++ + N IIFCN ++ V  +  +++K+G +   +HG ++Q+ R++ +  FKEG  Q +V
Sbjct: 238 YKEVVDNSIIFCNTREKVDEVLKNMKKKGLNAVGLHGGMEQKDRLETMKKFKEGEFQFLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ I ++ HV N+++P   E+Y+HRIGRTGRAG+ G A T +    ++ +  I
Sbjct: 298 CTDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFLRDI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK-NNPIPQKSTGFDRRKKNYSSQKSH 419
           E  IEK++           P LE++D  +        N I  K    ++++K+ +  K +
Sbjct: 358 EDYIEKEIPKRK------EPSLEEVDKGKKIFEENIKNRIKTKVPKNNKKQKDIT--KIY 409

Query: 420 IPLKESEKIS 429
           I     +KI 
Sbjct: 410 ISAGRKKKIR 419


>gi|295692132|ref|YP_003600742.1| ATP-dependent RNA helicase [Lactobacillus crispatus ST1]
 gi|295030238|emb|CBL49717.1| ATP-dependent RNA helicase [Lactobacillus crispatus ST1]
          Length = 494

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 149/396 (37%), Positives = 232/396 (58%), Gaps = 16/396 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+  ++ A+  +G+ + TPIQ +TIPL LQ  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-L 119
            +++K   + +  + +I+EPTRELA Q  +   + G++ +  V ++ GG     Q +   
Sbjct: 61  QMIDK---KEKAIQAVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLK 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LDH  R  + ++ ++ +V+DEAD MLDMGFI  I++I       +Q
Sbjct: 118 HHVPSILVGTPGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + ++ E F+ +PK + +     TA+ IE  FV                 
Sbjct: 178 TLLFSATMPKPILRIGEKFMDHPKIVRIKAKELTADLIEQYFVRAKESEKFDIMCRL--- 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++F   K+ V  L   L+ +G++   IHG++ Q  RM +L  F+EG + ++
Sbjct: 235 IDVQGPDLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           IE+L +KK       +S L PP +  D A H   ++
Sbjct: 355 IEQLTKKK-------MSPLRPPTD--DQALHGQLKQ 381


>gi|329926082|ref|ZP_08280693.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5]
 gi|328939480|gb|EGG35833.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5]
          Length = 506

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 166/467 (35%), Positives = 254/467 (54%), Gaps = 18/467 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL +SP ++ A+    Y  PTPIQ + IP VL   D+ G AQTGTGKTA+F +PM+
Sbjct: 1   MTFEDLNISPVILKALAKENYKAPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMI 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L +   +  M R +   +L PTRELA Q++DN + Y +   L    ++GG+  + Q +
Sbjct: 61  QLLNQQPPKPGMGRRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQER 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++GAD+LI TPGR+LD  N+  + + ++EILV+DEADRMLDMGFI  ++ I + +P  
Sbjct: 121 ALQQGADILIATPGRLLDLMNQKHVDLQHVEILVLDEADRMLDMGFIHDVKRIIAKMPSK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTL FSATM  E+ ++ +  L NP ++E+   SSTAE IE                   
Sbjct: 181 KQTLFFSATMPAEITQLVQTLLHNPVKVEITPVSSTAERIEQSVYLLETGNK---QQQLN 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++ + ++F   K+    +   L K   +  AIHG+  Q SR   L+NFK G  +
Sbjct: 238 ELMKDSSIVSALVFTRTKRGADRVARGLNKVNITAQAIHGDKSQTSRQTALNNFKSGATR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++ HV NF++PN  E Y+HRIGRTGRAG  G A +    +++  +
Sbjct: 298 VLVATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAISFCEVDEVPFL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IEKLI K +  +      ++  L          A K +P P+  +    + K+ +S+ 
Sbjct: 358 RDIEKLIGKSIPEVKDHAFPMSGAL---------RATKVDPAPKSGSSKPGKGKSAASRP 408

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
           +     +++   K + D   N       +    A   PK       K
Sbjct: 409 AK---PKTDAARKPKADAARNPKTGAPRQSRQDAGRKPKTDAPRQSK 452


>gi|330972612|gb|EGH72678.1| helicase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 498

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 178/493 (36%), Positives = 270/493 (54%), Gaps = 48/493 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGK   F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKAGGFALPIL 60

Query: 61  TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L          R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT ++++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPP----LEKIDIAQHNHARKNNPIPQKSTGF 406
            K + +IE++ ++K+   D +  D++++        E+ D+     AR       K+ G 
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARGDGDKNNGG 417

Query: 407 DR-------------------------RKKN------YSSQKSHIPLKESEKISKLQQDI 435
            R                         R+K        S Q++  P        +   + 
Sbjct: 418 RRDKGKDKGKEKPAAASATGERPARQPREKKPREGTPRSEQRASQPATPRPAADRAPDEF 477

Query: 436 QENDADSLGFRGN 448
           ++++ D+ G R +
Sbjct: 478 RDDEVDNFGNRAD 490


>gi|118443840|ref|YP_877556.1| ATP-dependent RNA helicase [Clostridium novyi NT]
 gi|118134296|gb|ABK61340.1| ATP-dependent RNA helicase [Clostridium novyi NT]
          Length = 476

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 146/429 (34%), Positives = 243/429 (56%), Gaps = 13/429 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+D  LS +++  +   GY  PT +Q KTIPLVLQ  D+   +QTG+GKTASF +P+ 
Sbjct: 1   MNFSDFKLSSEILKTIKMLGYKNPTEVQEKTIPLVLQGKDIIVKSQTGSGKTASFGIPLC 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++    +   P+ LIL PTRELA Q+ ++    G+   +    + G  P   Q  +L+
Sbjct: 61  EKVKLENKK---PQALILTPTRELAVQIKEDISNIGRFKKVKCTAVYGKEPISIQKNQLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR  DH  +G L +++I+ L+IDEAD+ML+MGFI  +++I   +   R T
Sbjct: 118 QRVHIVVGTPGRTFDHIQKGNLDLSDIKYLIIDEADKMLNMGFINQVEDIIKEITNDRIT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ + ++K+ + ++ +P++IE++  + T + IE  +         K       + 
Sbjct: 178 MLFSATLEERIEKLCKRYMNHPEKIEISKKNVTTDIIEQEYYKVNHS---KRFNTLTKVI 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +   + IIFCN K  V N+ + ++ QGF+  A+HG +DQ+ R+  +++FK G  Q +V
Sbjct: 235 YAEVPDSAIIFCNTKVEVGNVANKMKNQGFNAKALHGGMDQKDRLYTINDFKRGKFQFLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HV N++VP   E+Y+HRIGRTGRAG  GK+ T V+  + +  + I
Sbjct: 295 ATDVAARGIDVEEITHVINYEVPVEKESYVHRIGRTGRAGHKGKSITFVSDYEKRMFNEI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+ I   V           P  E+I+  +     K    P K       + +    K HI
Sbjct: 355 EEYIGYSVPEKEM------PQEEEIEKGKKLFEEKARQRP-KFKKVKGHEIDKKITKIHI 407

Query: 421 PLKESEKIS 429
              + +K+ 
Sbjct: 408 NAGKKKKVR 416


>gi|315181381|gb|ADT88294.1| ATP-dependent RNA helicase DeaD [Vibrio furnissii NCTC 11218]
          Length = 632

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 153/463 (33%), Positives = 243/463 (52%), Gaps = 35/463 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ D G+V PTPIQ   IPL+L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNSAILSALTDMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L+  + +   P+ +++ PTRELA QVA   +  G+N      L I  G     Q + L
Sbjct: 66  NKLDLNQYK---PQAIVMAPTRELAIQVAAEVKNLGQNIKGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D  +R +L ++     V+DEAD ML MGF+  +  I    P T Q
Sbjct: 123 KSGAHIVVGTPGRVKDLISRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++ + + FL++P R++V   + T   +E  +         +        
Sbjct: 183 RVLFSATMPPMVKDIVDRFLRDPARVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLET 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 243 EET---DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE++    ++ +        P  +K+  A+                  +      ++K H
Sbjct: 360 IERVTRSSMEEIQ------LPHRDKVAEAR----------------LSQLAIELEAEKEH 397

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
             L++  ++ +  Q   E DA++L       A +L + +GK  
Sbjct: 398 ASLEKFAELVEKLQASLEIDANTLA------AILLKRQQGKRP 434


>gi|256844404|ref|ZP_05549890.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           125-2-CHN]
 gi|256613482|gb|EEU18685.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           125-2-CHN]
          Length = 494

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 148/396 (37%), Positives = 232/396 (58%), Gaps = 16/396 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+  ++ A+  +G+ + TPIQ +TIPL LQ  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-L 119
            +++K   + +  + +I+EPTRELA Q  +   + G++ +  V ++ GG     Q +   
Sbjct: 61  QMIDK---KEKAIQAVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLK 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LDH  R  + ++ ++ +V+DEAD MLDMGFI  I++I       +Q
Sbjct: 118 HHVPSILVGTPGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + ++ E F+ +P+ + +     TA+ IE  FV                 
Sbjct: 178 TLLFSATMPKPILRIGEKFMDHPEIVRIKAKELTADLIEQYFVRAKESEKFDIMCRL--- 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++F   K+ V  L   L+ +G++   IHG++ Q  RM +L  F+EG + ++
Sbjct: 235 IDVQGPDLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           IE+L +KK       +S L PP +  D A H   ++
Sbjct: 355 IEQLTKKK-------MSPLRPPTD--DQALHGQLKQ 381


>gi|227878361|ref|ZP_03996316.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus crispatus
           JV-V01]
 gi|256849208|ref|ZP_05554641.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           MV-1A-US]
 gi|293380351|ref|ZP_06626422.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1]
 gi|227862040|gb|EEJ69604.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus crispatus
           JV-V01]
 gi|256713984|gb|EEU28972.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           MV-1A-US]
 gi|290923034|gb|EFD99965.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1]
          Length = 495

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 148/396 (37%), Positives = 232/396 (58%), Gaps = 16/396 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+  ++ A+  +G+ + TPIQ +TIPL LQ  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-L 119
            +++K   + +  + +I+EPTRELA Q  +   + G++ +  V ++ GG     Q +   
Sbjct: 61  QMIDK---KEKAIQAVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLK 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LDH  R  + ++ ++ +V+DEAD MLDMGFI  I++I       +Q
Sbjct: 118 HHVPSILVGTPGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + ++ E F+ +P+ + +     TA+ IE  FV                 
Sbjct: 178 TLLFSATMPKPILRIGEKFMDHPEIVRIKAKELTADLIEQYFVRAKESEKFDIMCRL--- 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++F   K+ V  L   L+ +G++   IHG++ Q  RM +L  F+EG + ++
Sbjct: 235 IDVQGPDLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           IE+L +KK       +S L PP +  D A H   ++
Sbjct: 355 IEQLTKKK-------MSPLRPPTD--DQALHGQLKQ 381


>gi|313906550|ref|ZP_07839880.1| DEAD/DEAH box helicase domain protein [Eubacterium cellulosolvens
           6]
 gi|313468619|gb|EFR63991.1| DEAD/DEAH box helicase domain protein [Eubacterium cellulosolvens
           6]
          Length = 524

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 159/439 (36%), Positives = 250/439 (56%), Gaps = 11/439 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L  ++  AV+ AGY + TPIQ KT+P++L+  D+   AQTGTGKTA+F LP+L
Sbjct: 1   MKFQELDLKQELQNAVVKAGYTEATPIQEKTMPVILEGRDLIACAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+ G  R     +L+L PTRELA Q+ +NF+KYG+   L    + GG   + Q + L 
Sbjct: 61  EKLDNGEVRKLR--SLVLTPTRELAVQIFENFKKYGRYLPLRAVCIYGGAKQKPQMEALR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ T GR++D+ N G + +  IEI V+DEADRMLDMGFI  ++ I   +   RQT
Sbjct: 119 RGCDILVATLGRLMDYMNLGLVSLKGIEIFVLDEADRMLDMGFINDVRKIAGSMNTDRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSATM  E++++    L++P  + V   S+ A+T++                +   + 
Sbjct: 179 LMFSATMPKEIEQLGRELLRDPADVRVAPQSTAADTVDQKICFVGHSDK---LKVLAEIL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+ +   IIF   K     +  +L + G +  AIHG+  Q  R   L  +K G   ++V
Sbjct: 236 KQEEVTRTIIFTRTKHGADRVARNLTRSGIAAKAIHGDKTQGQRQSTLEGYKAGHFHVLV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP+V HV NF++P   E YIHRIGRTGRAG  G A TL  ++++  +  +
Sbjct: 296 ATDVASRGLDIPEVSHVINFNLPQEPEAYIHRIGRTGRAGESGIAITLCEEDEMDLLKEV 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDI-AQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           EK++++++  +  + S +    +   + A  +  RK      K+ G   R+ N       
Sbjct: 356 EKILKREIPEMKTEYSIVLRGKKNGAVPAAGDRRRKVGKTSGKAGGSGERRNN-----GA 410

Query: 420 IPLKESEKISKLQQDIQEN 438
           +P ++ E +S+  +D + +
Sbjct: 411 VPARKRENLSRGTEDHRRS 429


>gi|307824474|ref|ZP_07654699.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307734458|gb|EFO05310.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 441

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 175/453 (38%), Positives = 258/453 (56%), Gaps = 16/453 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+ +++ AV D GYV PTP+Q K IPL+L+  DV   AQTGTGKTASF LP+L
Sbjct: 1   MSFAQLGLADELLKAVADQGYVTPTPVQQKAIPLILEGKDVLAGAQTGTGKTASFTLPLL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L +     + PR +   IL PTRELAAQV ++ + YG +       ++GG     Q +
Sbjct: 61  QRLAENHDPHQKPRRVRALILVPTRELAAQVYESVKTYGAHLPFHAEAVVGGASIGIQTR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG D+++ TPGR++DH  +  + ++N+E+LV+DEADRMLDMGF+P I+ + +L+P  
Sbjct: 121 QLRRGCDIVVATPGRLIDHVQQRNINLSNVEVLVLDEADRMLDMGFLPDIKQLMALIPKK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+LLFSAT+ + ++ ++   L NP  +EV   ++TAE +         +Y ++      
Sbjct: 181 RQSLLFSATVPNAIKSLAAQLLNNPVEVEVAKQNATAENVAERVYGIGREYKRELLSYL- 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                +  K  ++F   K     L   L + G    A+HG+  Q +R K L  FK G + 
Sbjct: 240 --IGSNNWKQVLVFVRTKHGADRLEKQLIEDGIRTAALHGDKTQGARNKALEQFKTGKVS 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI D+ HV NFDVP   E+YIHRIGRTGRAG +G+A +LV  E+   +
Sbjct: 298 VLVATDIAARGLDIDDLPHVVNFDVPQVPEDYIHRIGRTGRAGANGEALSLVCPEEAWML 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG-FDRRKKNYSSQ 416
             IEKL+++++  +  D       L+ ID  + N        P K+TG  D R     + 
Sbjct: 358 VEIEKLLKRQIPRV-ADTGYEPVSLKVIDAPKKN-------APNKTTGKKDMRHTKKPAA 409

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNM 449
           +   P     K    ++        S G RG +
Sbjct: 410 RGAKPTVRGVKQPDSKRIESRGKGRS-GSRGKV 441


>gi|240949643|ref|ZP_04753978.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor
           NM305]
 gi|240295901|gb|EER46577.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor
           NM305]
          Length = 604

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 140/372 (37%), Positives = 223/372 (59%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   ++ AV + G+V P+PIQ   IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 6   LTFADLGLPQSILDAVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPIL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++      R P+ L++ PTRELA QVAD  E++ KN   +    + GG  ++ Q + L
Sbjct: 66  AQIDP---EQRHPQMLVMAPTRELAIQVADACEQFTKNMRGIRTVTIYGGQRYDIQIRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA V++ TPGRILDH  RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 KNGAQVVVGTPGRILDHIRRGTLDLSALKAIVLDEADEMLRMGFIEDVETVMAELPEDHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+++P+ +++     +A  I   +                  
Sbjct: 183 TALFSATMPEPIRRITKRFMKDPQEVKIQASQRSAPDIAQSYWLVNGFRKNDA---LLRF 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++    E+ G+   A++G++ Q+SR + L   K G + ++
Sbjct: 240 LEVEDFDAAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQSREQALDKLKSGRLDII 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 300 VATDVAARGIDIDRISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359

Query: 360 IEKLIEKKVDWL 371
           IE LI+K +D +
Sbjct: 360 IEHLIKKPIDEV 371


>gi|269140076|ref|YP_003296777.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|267985737|gb|ACY85566.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|304559904|gb|ADM42568.1| ATP-dependent RNA helicase SrmB [Edwardsiella tarda FL6-60]
          Length = 448

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 149/449 (33%), Positives = 236/449 (52%), Gaps = 17/449 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++L L  +++ A+ D GY +PT IQI  IP  +   DV G A TGTGKTA+F+LP + 
Sbjct: 5   NFSELELDERLLDALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  ++ +L +  + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRVLILTPTRELAMQVADQARELARHTSLDITTITGGVSYINHAEIFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L +          +E L++DEADRMLDMGF   I+ +++   + RQT
Sbjct: 125 TNQDMVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFASDIETVSAETRWRRQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT  +D +   ++  L +P  ++V+      E  +       A   K    L   L
Sbjct: 185 LLFSATLESDAVHDFADRLLNDP--VDVSAEPPRRERKKIQQWYYRADSLKHKTALLCSL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  +   +IF  +++ V  L   L + G   C + G + Q  R + +    +G + ++
Sbjct: 243 LRQPDVTKSVIFVRKRERVHELVTWLHQAGIQACFLEGEMVQAKRNEAIKRMLDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIPD+ HVFNFD+P  A+ Y+HRIGRT RAGR G A +L+   D   +  
Sbjct: 303 VATDVAARGLDIPDISHVFNFDMPRSADVYLHRIGRTARAGRKGTAISLIEAHDQLLLGK 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           + + +++ +   +  +  L P  +   +       KN   P K     R +K    QK  
Sbjct: 363 VSRYVQEPLK--SRVVDELRPETKAPSL-------KNKGKPSKKVQAKRAQKKADEQKKK 413

Query: 420 IPLK----ESEKISKLQQDIQENDADSLG 444
           +  K    +S+ + K +Q   ++   S G
Sbjct: 414 VKTKVRHRDSKNVGKRRQSNAQSTPASAG 442


>gi|257464721|ref|ZP_05629092.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor
           202]
 gi|257450381|gb|EEV24424.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor
           202]
          Length = 604

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 140/372 (37%), Positives = 223/372 (59%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   ++ AV + G+V P+PIQ   IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 6   LTFADLGLPQSILDAVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPIL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++      R P+ L++ PTRELA QVAD  E++ KN   +    + GG  ++ Q + L
Sbjct: 66  AQIDP---EQRYPQMLVMAPTRELAIQVADACEQFTKNMRGIRTVTIYGGQRYDIQIRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA V++ TPGRILDH  RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 KNGAQVVVGTPGRILDHIRRGTLDLSALKAIVLDEADEMLRMGFIEDVETVMAELPENHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+++P+ +++     +A  I   +                  
Sbjct: 183 TALFSATMPEPIRRITKRFMKDPQEVKIQATQRSAPDIAQSYWLVNGFRKNDA---LLRF 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++    E+ G+   A++G++ Q+SR + L   K G + ++
Sbjct: 240 LEVEDFDAAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQSREQALDKLKSGRLDII 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 300 VATDVAARGIDIDRISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359

Query: 360 IEKLIEKKVDWL 371
           IE LI+K +D +
Sbjct: 360 IEHLIKKPIDEV 371


>gi|124007618|ref|ZP_01692322.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134]
 gi|123986916|gb|EAY26681.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134]
          Length = 441

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 158/410 (38%), Positives = 244/410 (59%), Gaps = 6/410 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L+ +++ A+ D+GY  PTPIQ K IPLVL  HDV G+AQTGTGKTA+FVLP+L 
Sbjct: 5   TFEDFKLNKQILQAITDSGYENPTPIQEKAIPLVLAGHDVMGVAQTGTGKTAAFVLPILM 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +   PR LIL PTRELA Q+    E Y ++ ++    + GG+  + Q + ++ 
Sbjct: 65  RIKYA--QGMHPRALILAPTRELAIQIEKAVETYSQHTDIRFTCVYGGLGPKTQIETIQA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D++I TPGR+LD ++R +L++ +I  LV+DEAD+M+DMGF+P I  I  ++P  RQ L
Sbjct: 123 GVDIVIATPGRLLDLYSREELVLKDINTLVMDEADKMMDMGFMPQINRILEIIPVKRQNL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +++QK+SE+FL+ P+ +EV   ++TAET+E     T    +K   L   L   
Sbjct: 183 LFSATMPEKVQKLSEDFLEFPEFVEVTPQATTAETVEQVLFETPNIKTKINLLYHFLADE 242

Query: 242 QDTMKNGIIFC-NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   +  I     +  + V    + +     V  IH N  Q +R+  ++ FK G I+++V
Sbjct: 243 ETFKRVMIFTRTRKNADSVYKFLARKFSEDQVRVIHANKGQNTRINSMNAFKSGDIRILV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+ ARG+D+  V HV NFD+P   E+Y+HRIGRTGRA + GKA + + + D+ H+  I
Sbjct: 303 GTDVVARGIDVTLVSHVINFDIPLIYEDYVHRIGRTGRAMQSGKAISFITEADVYHMKKI 362

Query: 361 EKLIEKK--VDWLNGDLSSLNPPLEKID-IAQHNHARKNNPIPQKSTGFD 407
           E++I  +  V+ +   +     P ++   IA+    +K    P     F 
Sbjct: 363 EQIIRLQVPVEPIPAAVEIPKTPFDEAQVIAREIDRQKRKEDPDYKGAFH 412


>gi|255530101|ref|YP_003090473.1| DEAD/DEAH box helicase domain-containing protein [Pedobacter
           heparinus DSM 2366]
 gi|255343085|gb|ACU02411.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 418

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 149/427 (34%), Positives = 227/427 (53%), Gaps = 15/427 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF D   +P+++  +L  G+   TPIQ + IPL+L + D+   AQTGTGKT +++LP++
Sbjct: 1   MDFKDFNFNPELLEGLLAMGFRNATPIQQQAIPLILNKKDLIACAQTGTGKTGAYLLPIM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
            ++ +   R     TLIL PTRELA Q+    E      N++   + GG     +E Q +
Sbjct: 61  NMIVETENRHN--NTLILAPTRELAQQIDLQVEALSYFTNISSLTVYGGGDGIAYEQQKR 118

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +  G D++I TPGR++ H + G L ++ ++ LV+DEADRMLDMGF   I  I S +P  
Sbjct: 119 SMREGVDLIIATPGRLISHLSSGVLKLDQLQHLVLDEADRMLDMGFYDDIMRIVSYLPQV 178

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  +++K          +       + ++  E      Y  + ++   L  
Sbjct: 179 RQTVMFSATMPPKIRK----LAATLLKHPEQINIALSKPAEGILQQIYFVHDEQKVPLLT 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +      K+ IIF + K+ V NL       G    A H ++ Q  R  IL  FK   + 
Sbjct: 235 DVLKTGEYKSIIIFASTKEKVKNLGKVFRTLGLKAEAFHSDLGQSERESILLKFKNKQLP 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ +D+ +RG+D+  +  V NFDVP+ AE+Y+HRIGRT RA   G A TLV   D + +
Sbjct: 295 ILIGTDVLSRGIDVEGIDLVVNFDVPHDAEDYVHRIGRTARAATKGTAITLVNSRDKRKL 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            +IEKLIEK++D +      L   L  I  A      K  P  QKS G  + K+ + ++K
Sbjct: 355 VSIEKLIEKEIDRIP-----LPEHLVAIPEATTERHAKPKPAAQKS-GSGKPKRKFWNKK 408

Query: 418 SHIPLKE 424
                KE
Sbjct: 409 PKASSKE 415


>gi|265754229|ref|ZP_06089418.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_33FAA]
 gi|263234938|gb|EEZ20493.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_33FAA]
          Length = 434

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 165/437 (37%), Positives = 252/437 (57%), Gaps = 9/437 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY  PTPIQ + IP++L+  D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   +    + LIL PTRELA Q+ +NF++Y K   +  A++ GG+P +AQ   L+
Sbjct: 61  QRLYQSDHKKG-IKALILTPTRELAIQIGENFDQYAKYTGVKHAVIFGGVPQKAQVDALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  VLI TPGR+LD  ++G + +  +E  V+DEADRMLDMGFI  I+ +  L+P  RQT
Sbjct: 120 RGVQVLIATPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++++ L NPK++EV   SST +TI     + Y    K+   L   L 
Sbjct: 180 LFFSATMPSEIEKLADSMLTNPKKVEVTPVSSTVDTI---QQSVYFVEKKEKKDLLLHLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +++ +IF   K     L   L K      AIHGN  Q +R + L+NFK+ T ++++
Sbjct: 237 KNPEIESVLIFTRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+++PN +E Y+HRIGRTGRAG  G A +    E++ ++  I
Sbjct: 297 ATDIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDI 356

Query: 361 EKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHN-HARKNNPIPQKSTGFDRRKKNYSS 415
           +KLI  ++  +       +  +     K +  +    A K     + +  + RRKK   S
Sbjct: 357 QKLIGLQIPVVKDHPWVTVEGVKAQAGKTEELKEKAKANKAYRGSKGNGDYWRRKKQAQS 416

Query: 416 QKSHIPLKESEKISKLQ 432
           ++         K S  Q
Sbjct: 417 RQGQGRQSSDRKASGRQ 433


>gi|323340095|ref|ZP_08080360.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
 gi|323092472|gb|EFZ35079.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
          Length = 506

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 150/384 (39%), Positives = 226/384 (58%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGL   ++ A+  +G+ + TPIQ  TIPLVL   DV G AQTGTGKTA+F LP+L
Sbjct: 10  LKFNELGLEEDLLKAIKRSGFEEATPIQEATIPLVLAGIDVIGQAQTGTGKTAAFGLPIL 69

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++    +    + +++ PTRELA Q  +   + GK+    V ++ GG     Q K L+
Sbjct: 70  QHVDV---KEEHIQAIVVSPTRELAIQTQEELYRLGKDKRAKVQVVYGGADIRRQIKLLK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LDH NR  + +++++ LV+DEAD MLDMGF+  I+ I   VP  RQT
Sbjct: 127 HVPQILVGTPGRLLDHINRKTVDLSHVKTLVLDEADEMLDMGFLEDIEAIIKNVPEERQT 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ + E F+  P+ +++     T + ++  FV                  
Sbjct: 187 LLFSATMPKAIRSIGEKFMHEPQVVKIKAKELTTDLVDQYFVKAREYEKFDIMTRIL--- 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L   LE +G++   IHG++ Q+ RM IL  FKEG + ++V
Sbjct: 244 DVQAPELTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLTQQRRMNILKKFKEGRLDILV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG HG + T V   +++++  I
Sbjct: 304 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGISVTFVTPNEMEYLRVI 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E+L +K+++        L PP EK
Sbjct: 364 ERLTKKRME-------PLRPPTEK 380


>gi|160888927|ref|ZP_02069930.1| hypothetical protein BACUNI_01347 [Bacteroides uniformis ATCC 8492]
 gi|270293944|ref|ZP_06200146.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. D20]
 gi|156861394|gb|EDO54825.1| hypothetical protein BACUNI_01347 [Bacteroides uniformis ATCC 8492]
 gi|270275411|gb|EFA21271.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. D20]
          Length = 425

 Score =  181 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 164/419 (39%), Positives = 243/419 (57%), Gaps = 9/419 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+ + GY  PTPIQ K+IP++LQ  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MTFENLNLIEPILKALQEEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K   R    + LIL PTRELA Q+ ++F  YGK   L  A++ GG+  + Q  +L+
Sbjct: 61  QKLYKTDNRKS-IKALILTPTRELAIQIGESFSAYGKYTGLRHAVIFGGVGQKPQTDELK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +L+ TPGR+ D  N+G + +  +E  V+DEADRMLDMGFI  I+ I  L+P  RQT
Sbjct: 120 RGVQILVATPGRLQDLVNQGFINLKALEFFVLDEADRMLDMGFIHDIRRILKLLPAKRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++ ++ + L +P+++EV   SST +TI         +  K   +      
Sbjct: 180 LFFSATMPPEIETLANSMLTHPEKVEVTPASSTVDTISQSVYFVEKKEKKDLLIHLL--- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +K+ +IF   K     L  +L K G    AIHGN  Q +R + L+ FK   +++++
Sbjct: 237 KNPAIKSVLIFTRTKYGADKLARTLSKSGIRAEAIHGNKSQNARQRALTGFKNHELRVLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+++PN  E Y+HRIGRTGRAG  G A +    E++ ++  I
Sbjct: 297 ATDIAARGIDVDQLSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCESEELPYLKDI 356

Query: 361 EKLIEKKVDWLN--GDLSSLNPPLEKIDIAQHNHARKNNPIPQKST---GFDRRKKNYS 414
           +KLI K +  +     +++     +KI   +     K N I + S     F RRKK  S
Sbjct: 357 QKLIGKSIPVIKEHPFVTADGLKAQKIKTEEIKAKTKENKIYRGSRTNGDFWRRKKQTS 415


>gi|152981130|ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151281207|gb|ABR89617.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 513

 Score =  181 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 168/439 (38%), Positives = 245/439 (55%), Gaps = 10/439 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL+P+++ A+ D GYV PTPIQ + IP+VLQ  DV G AQTGTGKTA F LP++ +
Sbjct: 38  FEDFGLAPEILRALSDQGYVHPTPIQAEAIPVVLQGIDVMGAAQTGTGKTAGFSLPIIQL 97

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L         P        IL PTRELA QVADN + Y ++  L   ++ GG+    Q  
Sbjct: 98  LMAHANSSASPARHPVRALILTPTRELADQVADNVKAYSRHTPLRSVVVFGGVDMAPQTA 157

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G +++I TPGR+LDH  +  L ++  +ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 158 ALRSGVEIVIATPGRLLDHIQQKTLNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQ 217

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ L+FSAT + E++K++  FL++P  IEV   ++TAE +                    
Sbjct: 218 RQNLMFSATFSPEIKKLAATFLKDPVTIEVARSNATAENVTQIVYKVEEGDK---GDAVS 274

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +  +K  I+F N K     L   LE +G    AIHG+  Q  RM  L  FK GTI+
Sbjct: 275 YIIRERGLKQVIVFSNTKIGASRLARQLENEGVKASAIHGDKSQAERMAALEAFKNGTIE 334

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+D+P  AE+Y+HRIGRTGRAG  G A +L + +D + +
Sbjct: 335 VLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLYSDKDARLL 394

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IEK+I+ K  ++   L+   P   +    +    R+++   +      R      +  
Sbjct: 395 VDIEKMIKHK--FVPAQLAGFVPAGNRASERKERSPRRDDSESRGRGSERRESAPREASG 452

Query: 418 SHIPLKESEKISKLQQDIQ 436
              P   S   +  ++ I 
Sbjct: 453 GRDPGSRSAYAAPRKEKID 471


>gi|325116173|emb|CBZ51727.1| putative ATP-dependent helicase, putaive [Neospora caninum
           Liverpool]
          Length = 395

 Score =  181 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 200/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G    ++  +   G+ +P+ +Q + I  +++  DV   +Q+GTGKT  F L    
Sbjct: 23  TFDSMGFKEDLLRGIYAYGFERPSAVQQRAIVPIMKGRDVIVQSQSGTGKTCVFCL---G 79

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR P+ LIL PTRELA Q        G   ++ V   IGG       + LE 
Sbjct: 80  CLQCIDPKVRDPQALILSPTRELAEQSQKVCLALGDYMSVQVHCCIGGKRVGDDIRALEA 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+     +      +I++LV+DEAD ML+ GF   + +I   +P + Q +
Sbjct: 140 GVHIVSGTPGRVFHMIAQRHFSTRHIKLLVLDEADEMLNRGFKEQVYDIYRYLPPSTQVV 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P R+ V     T E I+  FVA   +  K        L  
Sbjct: 200 LVSATLPHEVLEMTTKFMDDPFRVLVKRDELTLEGIKQFFVAVEREQWKFDT--LTDLYD 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K  V  L   +++  F+V  +HG++ Q+ R +I+  F+ G  ++++A
Sbjct: 258 TLTITQAVIFCNTKAKVEWLAQKMKEANFTVSRMHGDMPQQERDEIMRQFRGGQSRVLIA 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+  RGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 318 TDVWGRGLDVQQVSLVINYDLPNSRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRDIE 377

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 378 QYYATQIDEMPMNVADL 394


>gi|108759595|ref|YP_632093.1| RNA helicase DeaD [Myxococcus xanthus DK 1622]
 gi|108463475|gb|ABF88660.1| RNA helicase DeaD [Myxococcus xanthus DK 1622]
          Length = 602

 Score =  181 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 150/368 (40%), Positives = 211/368 (57%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL P +V A+   GY +PTPIQ   +P +L   D+ GIA TGTGKTA+F LP+L 
Sbjct: 45  TFDSLGLKPALVEALSALGYEEPTPIQAAALPPLLAGKDLLGIAATGTGKTAAFALPLLN 104

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +E G  R      L+L PTRELA QV++   +YG+   ++V  L GG     Q + L+R
Sbjct: 105 HVEPGACRPNTTSALVLVPTRELAMQVSEAIHRYGQKLGISVLPLYGGQVIGQQLRVLKR 164

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR LDH  RG L ++++ ++V+DEAD MLDMGF   ++ I S  P  RQT 
Sbjct: 165 GVDVVVATPGRALDHLRRGTLQLDDVRVVVLDEADEMLDMGFAEDLEAILSGTPEDRQTA 224

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +  ++E  L  P R+++         I       Y             L  
Sbjct: 225 LFSATLPPRIASIAERHLHEPVRVKIAREKVEQGEIPRVRQTAYVVPRAFKIATLGRLLD 284

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            ++    IIFC  +  V +L  SL  +G+   A+HG + Q  R +++   K     L+VA
Sbjct: 285 VESPTAAIIFCRTRTEVDDLTVSLNGRGWRAHALHGGMTQEQRDRVIKQLKSQGTDLLVA 344

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP + HV NFDVPN  E Y+HRIGRTGRAGR G A TLV   + + +  IE
Sbjct: 345 TDVAARGLDIPRLSHVVNFDVPNAPEAYVHRIGRTGRAGREGVAITLVEPREHRLLRNIE 404

Query: 362 KLIEKKVD 369
           ++  ++++
Sbjct: 405 RVTGQRIE 412


>gi|239909011|ref|YP_002955753.1| ATP-dependent RNA helicase [Desulfovibrio magneticus RS-1]
 gi|239798878|dbj|BAH77867.1| ATP-dependent RNA helicase [Desulfovibrio magneticus RS-1]
          Length = 496

 Score =  181 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 163/469 (34%), Positives = 240/469 (51%), Gaps = 13/469 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    L   ++  +  AGY  PTPIQ + +P V++ HD+ G+AQTGTGKTA+F+LP+L
Sbjct: 1   MSFDSFCLHDSLIANIKRAGYETPTPIQAEAVPHVMEGHDLMGLAQTGTGKTAAFLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L    AR R PRTLIL PTRELA Q+  +   + +   L   ++ GG+    Q + L 
Sbjct: 61  HRLITNPARTRSPRTLILAPTRELAEQIFRSTLDFMRGTRLRATVIYGGVGMFPQVRALR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DV++  PGR+LDH N+G +  + +E LV+DEAD M DMGF+P I+ I + +P  RQT
Sbjct: 121 QGVDVIVACPGRLLDHLNQGNVRFDGLETLVLDEADHMFDMGFLPDIKRILAALPAKRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +               V         +     A Y     + A L   L 
Sbjct: 181 LLFSATMPPAISG----LAAETLTDPVTVRIGHLAPLSTVEHAIYPVSHNQKAPLLLHLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   ++ I+F   K    NL   L + G     + GN+ QR R   +  F+ G+ Q++V
Sbjct: 237 GEAGKESVIVFTRTKHRAKNLAQQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV NFD+P+ AE Y HRIGRTGRA R G+A T V  ED+  + AI
Sbjct: 297 ATDIAARGIDVSQVAHVVNFDIPDTAEAYTHRIGRTGRAERDGQAHTFVTGEDMGMVRAI 356

Query: 361 EKLIEKKVDWLNGDLSSLNP-PLEKIDIAQHNHARKNN--PIPQKSTGFDRRKKNYS--S 415
           E  ++K +   N +     P    +   A  + AR       P++    DR+++      
Sbjct: 357 ESHMKKPLPRRNVEGFEPEPGEFRRSAPAPRSAARPRQGYGAPRQGGYGDRQRQGDRPYG 416

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            +   P  E  +    + D   +D      R + PA   P++     ++
Sbjct: 417 DRPRGPRPEGARADSARDDRPRSDRP----RSDRPAADRPRSDRPRTER 461


>gi|325104434|ref|YP_004274088.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324973282|gb|ADY52266.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 445

 Score =  181 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 159/435 (36%), Positives = 244/435 (56%), Gaps = 8/435 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D   + +++ A+ +AGY +PTPIQ K IP +L   DV GIAQTGTGKTA++VLPM+ 
Sbjct: 4   NFEDFKFNRQILNAIEEAGYTQPTPIQEKAIPPILNGQDVLGIAQTGTGKTAAYVLPMIM 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +    R LIL PTRELA Q+ +N + + K  +L   ++ GGI  +AQ  +L +
Sbjct: 64  KLKFA--QGDDIRALILAPTRELALQIEENVKIFSKYTDLRSVVVFGGIGPKAQADQLAK 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GAD+LI TPGR +D +  G ++   ++ LV+DEAD+M+DMGF+P I  +  +VP  RQ L
Sbjct: 122 GADILIATPGRFMDLYLDGHIVTKKLQFLVLDEADKMMDMGFMPQINKVLEIVPKKRQNL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM+++++++SENFL  P ++EV   ++ AET+E          +K   L   +   
Sbjct: 182 LFSATMSEKVERLSENFLLWPTKVEVTPQATPAETVEQELYFVPNLKTKINLLKIFVEDD 241

Query: 242 QDTMKNGIIFCNQ-KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            D  K  I    +     V            V  +H N  Q +R+  +++FK   ++++V
Sbjct: 242 PDVSKLIIFCRTRVVAENVYRFLLRRFNENHVKVLHANKGQNTRINSINSFKNDEVRILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV NF+VP   E+Y+HRIGRTGRA   GKA T     +   I  I
Sbjct: 302 ATDVAARGIDVSSVSHVINFEVPVVYEDYVHRIGRTGRAFSQGKAITFCNPAEEYSIRKI 361

Query: 361 EKLIEKKVDWLNGDLSSLNPP---LEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           EKLI +++   +             E+  IA+    +K    P+    F  +K    +QK
Sbjct: 362 EKLIRQQIPVKDIPSKVFIEDTAYEERQAIAREIDNQKRKEDPEFKGAFHDKKT--PNQK 419

Query: 418 SHIPLKESEKISKLQ 432
           +    + ++   K+ 
Sbjct: 420 AKFKAQRAKTTGKIP 434


>gi|115375824|ref|ZP_01463075.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
 gi|310820250|ref|YP_003952608.1| ATP-dependent RNA helicase rhle [Stigmatella aurantiaca DW4/3-1]
 gi|115367134|gb|EAU66118.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
 gi|309393322|gb|ADO70781.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1]
          Length = 496

 Score =  181 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 165/415 (39%), Positives = 238/415 (57%), Gaps = 13/415 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ AV   GY  PTPIQ + IP  L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MTFDELKLSEPLLRAVKAEGYTTPTPIQQRAIPPALTGQDVLGCAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L  GR+        I      PTRELA+Q+AD+F+ YG+   L+ A++ GG+   AQ 
Sbjct: 61  HRLSAGRSPPPAQGRPIRVLVLTPTRELASQIADSFQAYGRFTGLSWAVIFGGVGQHAQE 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG DVLI TPGR+LD   +G +    +E+ V+DEADRMLDMGFI  ++ I S +P 
Sbjct: 121 QTLRRGVDVLIATPGRLLDLMGQGLVSYKALEVFVLDEADRMLDMGFIHDVKRIISALPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSATM  E+Q +++  L++P R+EV   S+TAET+E        +  +   +  
Sbjct: 181 KRQTLFFSATMPPEIQSLAQGILKSPVRVEVTPESTTAETVEQKMFFVEREQKRHLLVHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                  +++  ++F   K     +   L     S  AIHGN  Q +R + L  FK+G+ 
Sbjct: 241 L---GDASIRRALVFTRTKHGANRVAKHLASSRISAEAIHGNKSQNARERALGAFKDGSC 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G A +    E+  +
Sbjct: 298 RVLVATDIAARGIDIEGITHVINFDLPNIPESYVHRIGRTGRAGAVGTALSFCDGEERAY 357

Query: 357 IDAIEKLIEKKVDWL------NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           +  IE+ I ++V  +      +G  + +     +      N  R++N   Q+S G
Sbjct: 358 LRDIERTIRRQVPVMADHPFRSGQSAPVPSEPGEARPRPSNEGRRHNSGGQRSQG 412


>gi|296111234|ref|YP_003621616.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154]
 gi|295832766|gb|ADG40647.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154]
          Length = 532

 Score =  181 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 150/373 (40%), Positives = 226/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+   GYV+ TPIQ KTIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLSGRDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    LI+ PTRELA Q AD  +K G++ ++ V ++ GG     Q + L+
Sbjct: 61  EHIDLNNKNIQ---ALIVSPTRELAIQTADELKKLGRDKHVDVQVVFGGSDIRRQIQNLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LDH NR  + ++N++ LV+DEAD ML+MGF+  I++I    P  RQT
Sbjct: 118 SHPQILVGTPGRLLDHINRKTVKIDNVKTLVLDEADEMLNMGFLEDIESIIKNTPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+ NP+ I++     T + +             +       + 
Sbjct: 178 LLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLV---DQYFVRMRENEKFDTMTRIF 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  I+F   K+ V  L   LE +G+    +HG++ Q+ R ++L+ FK   I ++V
Sbjct: 235 DVQAPKLAIVFGRTKRRVEELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HV+NFD+P   E+Y+HRIGRTGRAG  G + TLVA  ++ ++ A+
Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTLVAPNEMDYLRAV 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 EDLTKKRMTALEP 367


>gi|298208537|ref|YP_003716716.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
 gi|83848460|gb|EAP86329.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
          Length = 445

 Score =  181 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 150/422 (35%), Positives = 219/422 (51%), Gaps = 10/422 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL LSP +  A+ + G V PTPIQ ++ P+++   DV GIAQTGTGKT ++ LP+L 
Sbjct: 4   TFKDLNLSPSLQKALDELGIVHPTPIQEESFPVIMSGRDVVGIAQTGTGKTYAYALPVLR 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L     R   PR LI+ PTREL  QV    EK     ++ +  + GG     Q K +  
Sbjct: 64  LLPYS--RQVNPRALIIVPTRELVVQVVSEIEKLCTLNDMRILGVYGGTNINTQKKAVVE 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVL+ TPGR+ D      L + NI+ LVIDE D MLD+GF   + NI  ++P   Q +
Sbjct: 122 GCDVLVATPGRLYDLAVSHVLQLKNIQKLVIDEVDVMLDLGFRFQLVNILDILPKKHQNI 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMTDE+  +   F  NP +I V    +    I+         Y+K+  ++  L   
Sbjct: 182 LFSATMTDEVSSMISEFFNNPIKISVAKSGTPLVNIQQYRYNVPNYYTKQNLIIHLLEDV 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   K  I   N++          +        IH N  Q  R+  +  F+ G  ++M+A
Sbjct: 242 ETYEKTLIFVPNKRIADRLFAVVDKTFPDQASVIHSNKTQNYRLNSIEAFETGEHRIMIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLDI D+ HV N D P+  ENY+HRIGRTGRA + G A  L ++ +++ +  IE
Sbjct: 302 TDVMARGLDIDDISHVINMDTPSYPENYLHRIGRTGRAEKKGTALVLTSESEVEWLKTIE 361

Query: 362 KLIEKKVD--WLNGDLS---SLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +L+E KVD   +  D+     L P  ++  +  +N  +K    P K   F  +K     +
Sbjct: 362 ELMETKVDTIEMTNDVEISKELAPEEQQKPVEIYNPLKKE---PSKGKAFHEKKDKNRKR 418

Query: 417 KS 418
             
Sbjct: 419 NE 420


>gi|300214210|gb|ADJ78626.1| ATP-dependent RNA helicase [Lactobacillus salivarius CECT 5713]
          Length = 492

 Score =  181 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 169/485 (34%), Positives = 256/485 (52%), Gaps = 49/485 (10%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ AV  +G+ + TPIQ +TIPLVL  +DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFGELGLDKSLLKAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-L 119
             L+    +++     I+ PTRELA Q  +     GK     V ++ GG     Q K+  
Sbjct: 61  QQLDLDLRQIQAV---IISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLE 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +L+ TPGR+LDH  RG + + +++ L++DEAD MLDMGF+  I+ I   VP  RQ
Sbjct: 118 QHTPHILVGTPGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E+ K+ E F+ NP+ +++     T + ++  FV T               
Sbjct: 178 TLLFSATMPKEILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRL--- 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  I+F   K+ V  L   LE +G++   IHG++ Q+ RM +L  FK G + ++
Sbjct: 235 IDVQAPELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG HG + T V   ++ ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRV 354

Query: 360 IEKLIEKKVDWLNG----------------DLSSL-------------NPPLEKIDIAQH 390
           IEKL +K++D L                  D+  L                LE+ D  + 
Sbjct: 355 IEKLTKKRMDPLKPPTQDEAFIGQVSSALDDIKDLIADTDTERYEAQAQALLEQYDAVEV 414

Query: 391 NHARKNNPIPQKSTG----------FDRRKKNYSS---QKSHIPLKESEKISKLQQDIQE 437
             A  NN   + ++             RRKK   +   ++ +   K S++ +K  ++ ++
Sbjct: 415 VAAFLNNMTKKDASDVPVKITPEKPLPRRKKGRRNGNYRRGNDNFKRSKRFNKHDRNNRD 474

Query: 438 NDADS 442
           N   S
Sbjct: 475 NKRRS 479


>gi|281424310|ref|ZP_06255223.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           F0302]
 gi|281401579|gb|EFB32410.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           F0302]
          Length = 544

 Score =  181 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 145/427 (33%), Positives = 242/427 (56%), Gaps = 19/427 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  + K TP+Q   IP +L+ +DV G+AQTGTGKTA+++LP+L
Sbjct: 3   MYFDELELNDNVLDALYDMRFEKCTPVQENCIPEILKGNDVLGVAQTGTGKTAAYLLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP----FEAQN 116
           + L+ G         LI+ PTRELA Q+    + +G   N   ++ + G      ++ + 
Sbjct: 63  SKLDDGGYPDNAINCLIMSPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQEL 122

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GAD++I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P 
Sbjct: 123 KSLQLGADIVIATPGRLISHISLGNVDLSKVSFFILDEADRMLDMGFSDDIIKIAKKLPQ 182

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             QT++FSATM D+++ +++  L+NPK I++       +  +      Y  Y  +   + 
Sbjct: 183 NCQTIMFSATMPDKIEDLAKTLLKNPKVIKLAVSKPAEKIKQS----AYVCYETQKMGII 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + +     ++  IIFC  K  V  +  +L+++  +   +H ++DQ +R  ++  FK G  
Sbjct: 239 KDIFKNGDLERVIIFCGSKLKVKQVAGALQRKHINCGEMHSDLDQATRDDVMFKFKSGQF 298

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ ARG+DI D+  V N+DVP+ AE+Y+HRIGRT RA R G A T V+++DI +
Sbjct: 299 DVLVATDIVARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARAAREGSAITFVSEDDIYY 358

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              IEK +EK+V+           P+   D  ++  A K    P++ +    R+++   +
Sbjct: 359 FQQIEKFLEKEVEKTPL-------PVGLGDGPEYKSAGK----PKRGSSAKSRRRDNRDR 407

Query: 417 KSHIPLK 423
            SH   K
Sbjct: 408 TSHKDKK 414


>gi|257081095|ref|ZP_05575456.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
 gi|256989125|gb|EEU76427.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
          Length = 513

 Score =  181 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 153/384 (39%), Positives = 229/384 (59%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+P+++ AV  AG+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++      R+ + L++ PTRELA Q  +   + G++  + V  + GG     Q + L+
Sbjct: 61  NKIDADN---RVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  +E LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 DRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F++ P+ +++     TA+ I+  +V +                
Sbjct: 178 LLFSATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLL--- 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       ++ L PP EK
Sbjct: 355 ENLTKKR-------MTPLRPPTEK 371


>gi|255973920|ref|ZP_05424506.1| helicase [Enterococcus faecalis T2]
 gi|255966792|gb|EET97414.1| helicase [Enterococcus faecalis T2]
          Length = 515

 Score =  181 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 153/384 (39%), Positives = 229/384 (59%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+P+++ AV  AG+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++      R+ + L++ PTRELA Q  +   + G++  + V  + GG     Q + L+
Sbjct: 61  NKIDADN---RVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  +E LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 DRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F++ P+ +++     TA+ I+  +V +                
Sbjct: 178 LLFSATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLL--- 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       ++ L PP EK
Sbjct: 355 ENLTKKR-------MTPLRPPTEK 371


>gi|255971301|ref|ZP_05421887.1| helicase [Enterococcus faecalis T1]
 gi|256617719|ref|ZP_05474565.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256761605|ref|ZP_05502185.1| helicase [Enterococcus faecalis T3]
 gi|256854305|ref|ZP_05559669.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
 gi|256957293|ref|ZP_05561464.1| helicase [Enterococcus faecalis DS5]
 gi|256959973|ref|ZP_05564144.1| helicase [Enterococcus faecalis Merz96]
 gi|256964332|ref|ZP_05568503.1| helicase [Enterococcus faecalis HIP11704]
 gi|257077733|ref|ZP_05572094.1| helicase [Enterococcus faecalis JH1]
 gi|257083763|ref|ZP_05578124.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|257086188|ref|ZP_05580549.1| helicase [Enterococcus faecalis D6]
 gi|257089260|ref|ZP_05583621.1| helicase [Enterococcus faecalis CH188]
 gi|257415413|ref|ZP_05592407.1| helicase [Enterococcus faecalis AR01/DG]
 gi|257418444|ref|ZP_05595438.1| helicase [Enterococcus faecalis T11]
 gi|257421095|ref|ZP_05598085.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294781261|ref|ZP_06746607.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300859873|ref|ZP_07105961.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
           TUSoD Ef11]
 gi|255962319|gb|EET94795.1| helicase [Enterococcus faecalis T1]
 gi|256597246|gb|EEU16422.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256682856|gb|EEU22551.1| helicase [Enterococcus faecalis T3]
 gi|256709865|gb|EEU24909.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
 gi|256947789|gb|EEU64421.1| helicase [Enterococcus faecalis DS5]
 gi|256950469|gb|EEU67101.1| helicase [Enterococcus faecalis Merz96]
 gi|256954828|gb|EEU71460.1| helicase [Enterococcus faecalis HIP11704]
 gi|256985763|gb|EEU73065.1| helicase [Enterococcus faecalis JH1]
 gi|256991793|gb|EEU79095.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|256994218|gb|EEU81520.1| helicase [Enterococcus faecalis D6]
 gi|256998072|gb|EEU84592.1| helicase [Enterococcus faecalis CH188]
 gi|257157241|gb|EEU87201.1| helicase [Enterococcus faecalis ARO1/DG]
 gi|257160272|gb|EEU90232.1| helicase [Enterococcus faecalis T11]
 gi|257162919|gb|EEU92879.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294451597|gb|EFG20053.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300850691|gb|EFK78440.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
           TUSoD Ef11]
 gi|323480025|gb|ADX79464.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis 62]
          Length = 515

 Score =  181 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 153/384 (39%), Positives = 229/384 (59%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+P+++ AV  AG+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++      R+ + L++ PTRELA Q  +   + G++  + V  + GG     Q + L+
Sbjct: 61  NKIDADN---RVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  +E LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 DRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F++ P+ +++     TA+ I+  +V +                
Sbjct: 178 LLFSATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLL--- 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       ++ L PP EK
Sbjct: 355 ENLTKKR-------MTPLRPPTEK 371


>gi|23098064|ref|NP_691530.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831]
 gi|22776289|dbj|BAC12565.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 495

 Score =  181 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 141/370 (38%), Positives = 218/370 (58%), Gaps = 6/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+S  ++ A+   G+ + TPIQ +TIP  L+ HDV G AQTGTGKTA+F +P++ 
Sbjct: 3   KFNELGVSAPIMKALEKMGFEEATPIQAETIPHALEGHDVIGQAQTGTGKTAAFGIPLIN 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +     +V+    LI+ PTRELA QVA+   +  K  ++    + GG P + Q + L+ 
Sbjct: 63  KINAKLRKVQ---GLIVAPTRELAIQVAEEINRLAKFKSVRALAIYGGQPMDRQIRALKD 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  R  + ++ +   V+DEAD ML+MGFI  I+ I   +P  RQTL
Sbjct: 120 GPQIVVATPGRLLDHMRRKTIRIDQVHTAVLDEADEMLNMGFIDDIREILKGIPEERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++ ++   ++ PK ++V     T E I            K           
Sbjct: 180 LFSATMPKEIRNIATTLMKEPKEVKVKAKEMTVENI---DQYFIEIPEKYKFDTLNNHLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            ++ +  IIF   KK V  +   L+ +G+    IHG++ Q  RM +L  FK+G + ++VA
Sbjct: 237 INSPELAIIFARTKKRVDEVAEGLQARGYRSEGIHGDLTQGKRMSVLKKFKQGRVDVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G+A + +   ++ H++ IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGEAISFITPREMAHLNLIE 356

Query: 362 KLIEKKVDWL 371
           +  + K+  +
Sbjct: 357 QTTKSKMKRM 366


>gi|325982424|ref|YP_004294826.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
           AL212]
 gi|325531943|gb|ADZ26664.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
          Length = 476

 Score =  181 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 164/441 (37%), Positives = 251/441 (56%), Gaps = 24/441 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGLS  ++ A+ + GY  PTPIQ + IP++L+  DV G AQTGTGKTA F LPML
Sbjct: 5   ISFEQLGLSTDLLRAISEQGYTNPTPIQQQAIPIILKGFDVMGGAQTGTGKTAGFTLPML 64

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             LE        P        IL PTRELA QV ++   YGK   L  A++  G+  + Q
Sbjct: 65  QKLESHANSSTSPAKHPTRALILVPTRELAIQVYESVRAYGKYVALKSAVIYDGVNIDVQ 124

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              +  G ++L+ TPGR+LDH  +  L+++ IEIL++DEADRMLDMGF+P I+ I  ++P
Sbjct: 125 IAAIRSGVEILVATPGRLLDHLQQKNLILSKIEILILDEADRMLDMGFLPDIKQIIQMLP 184

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ L+FSAT ++E++K++   L++P  IEV   +S ++ I H     Y+  SK     
Sbjct: 185 DQRQNLMFSATFSEEIKKLAGKILKSPILIEVAKQNSVSDLISH---IVYSVESKNKQEF 241

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              +  +  ++  +IF   K    +L   L  +      IHG+ +Q  R + L NFK G 
Sbjct: 242 LIDMIKKKNLQQVLIFTRTKHGADHLAQKLNSRDILSSVIHGDRNQLQRTQALDNFKCGL 301

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+AARGLDI ++ HV NF++PN  E+Y+HRIGRTGRAG  G A + V++E+  
Sbjct: 302 IRILVATDVAARGLDIEELTHVINFELPNNPEDYVHRIGRTGRAGAKGFAISFVSREETV 361

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS- 414
            +  IE+L+  K+                ++ +      +    P K+   + +KK+ + 
Sbjct: 362 LLGGIERLLGIKIQ---------------VEESNSGLKNQQTEFPNKTKIIEEQKKSRAF 406

Query: 415 SQKSHIPLKESEKISKLQQDI 435
           S K+    K S++I K++  +
Sbjct: 407 SFKNESLSKRSKRIEKMEDPL 427


>gi|84998580|ref|XP_954011.1| eukaryotic translation initiation factor [Theileria annulata]
 gi|65305009|emb|CAI73334.1| eukaryotic translation initiation factor, putative [Theileria
           annulata]
          Length = 394

 Score =  181 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 198/377 (52%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL  +++  +   G+ KP+ +Q + I  +L+  DV   +Q+GTGKT  F L  L 
Sbjct: 22  SFEDLGLKEEILKGIFAYGFDKPSAVQQRAIKPILEGRDVIIQSQSGTGKTCVFCLGALQ 81

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +      VR  + L+L PTRELA Q        G   N+ V   IGG       K LE 
Sbjct: 82  TVNSN---VRETQVLLLSPTRELAEQSQKVCLALGDYCNVEVHCCIGGKKVSDDIKALES 138

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+        L   NI+ L++DEAD ML+ GF   + ++   +P T Q +
Sbjct: 139 GVQIVSGTPGRVNHMITDRHLNTRNIKQLILDEADEMLNRGFKEQVYSVYRYLPPTIQVV 198

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  ++ +++  F+ NP ++ V     T E I+  F++   +  K   L       
Sbjct: 199 LVSATLPHDVIEITNKFMNNPFKVLVKRDELTLEGIKQFFISVEKEQWKFDTLCDL--YE 256

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IFCN K+ V  L   ++   F V  +HG + Q+ R  I+  F++G  +++++
Sbjct: 257 SLIITQAVIFCNTKEKVDWLAKKMKDANFEVSKMHGEMSQKERNDIMQRFRKGESRVLIS 316

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RGLD+  V  V N+D+PN  E+YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 317 TDLWGRGLDVQQVSLVVNYDLPNSRESYIHRIGRSGRYGRKGVAINFVKDDDIRILRDIE 376

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  ++S L
Sbjct: 377 QYYSTQIDEMPMNISEL 393


>gi|114331652|ref|YP_747874.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas
           eutropha C91]
 gi|114308666|gb|ABI59909.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91]
          Length = 488

 Score =  181 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 164/435 (37%), Positives = 252/435 (57%), Gaps = 14/435 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L LS +++ AV+D GY+ PTPIQ + IP +L   DV   AQTGTGKTA F LP+L
Sbjct: 5   VTFEQLDLSSEILRAVIDEGYINPTPIQAQVIPPILAGKDVMASAQTGTGKTAGFTLPLL 64

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L+   +    P        I+ PTRELA Q+ ++  KYGK   L   ++ GG+  E Q
Sbjct: 65  HHLQAHASSSTSPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRTTVVFGGVNIEPQ 124

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G ++L+ TPGR+LD      +  +  EILV+DEADRMLDMGF+P I+ + +L+P
Sbjct: 125 ITELRNGVEILVATPGRLLDLVEHKAVNFSKTEILVLDEADRMLDMGFLPDIKKVMALLP 184

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ+L+FSAT +DE++K+++  L++P RIEV   ++  E+I H       +       L
Sbjct: 185 SQRQSLMFSATFSDEIRKLADGLLKHPVRIEVAAQNTINESISHVVHRIKPESK---FAL 241

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L  Q  +K  ++F   K     L   L        AIHG+ +Q+ R + LS FK G 
Sbjct: 242 LLHLVKQQDLKQALVFVKTKHGASQLAQMLSHHKILALAIHGDKNQQQRTQALSEFKHGD 301

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARG+DI  + HV N+++P   E+Y+HRIGRTGRAG  GKA +LV++ + +
Sbjct: 302 VQILVATDVAARGIDIEKLSHVVNYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHETE 361

Query: 356 HIDAIEKLIEKKVDW-----LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            + +IEKL+  K++       + +L   + P  K  ++  + AR++N   + + G   RK
Sbjct: 362 LLTSIEKLLNTKLEIEQIAGFDAELFVRSLPDRKNRVSA-DIARRSNKQAEVANGEKTRK 420

Query: 411 KNYSSQKSHIPLKES 425
            + S + +    K+ 
Sbjct: 421 YSGSRRSALQNHKDP 435


>gi|212690559|ref|ZP_03298687.1| hypothetical protein BACDOR_00044 [Bacteroides dorei DSM 17855]
 gi|212666908|gb|EEB27480.1| hypothetical protein BACDOR_00044 [Bacteroides dorei DSM 17855]
          Length = 434

 Score =  181 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 165/437 (37%), Positives = 252/437 (57%), Gaps = 9/437 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY  PTPIQ + IP++L+  D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   +    + LIL PTRELA Q+ +NF++Y K   +  A++ GG+P +AQ   L+
Sbjct: 61  QRLYQSDHKKG-IKALILTPTRELAIQIGENFDQYAKYTGVKHAVIFGGVPQKAQVDALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  VLI TPGR+LD  ++G + +  +E  V+DEADRMLDMGFI  I+ +  L+P  RQT
Sbjct: 120 RGVQVLIATPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++++ L NPK++EV   SST +TI     + Y    K+   L   L 
Sbjct: 180 LFFSATMPSEIEKLADSMLTNPKKVEVTPVSSTVDTI---QQSVYFVEKKEKKDLLLHLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +++ +IF   K     L   L K      AIHGN  Q +R + L+NFK+ T ++++
Sbjct: 237 KNPEIESVLIFTRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+++PN +E Y+HRIGRTGRAG  G A +    E++ ++  I
Sbjct: 297 ATDIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDI 356

Query: 361 EKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHN-HARKNNPIPQKSTGFDRRKKNYSS 415
           +KLI  ++  +       +  +     K +  +    A K     + +  + RRKK   S
Sbjct: 357 QKLIGLQIPVVKDHPWVTVEGVKAQAGKTEELKEKAKANKAYRGSKGNGDYWRRKKQVQS 416

Query: 416 QKSHIPLKESEKISKLQ 432
           ++         K S  Q
Sbjct: 417 RQGQGRQSSDRKASGRQ 433


>gi|300173740|ref|YP_003772906.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
           [Leuconostoc gasicomitatum LMG 18811]
 gi|299888119|emb|CBL92087.1| ATP-dependent RNA helicase/Autoaggregation-mediating protein
           [Leuconostoc gasicomitatum LMG 18811]
          Length = 538

 Score =  181 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 146/373 (39%), Positives = 224/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+   GYV+ TPIQ KTIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    LI+ PTRELA Q A+  +K G++ ++ V ++ GG     Q + L+
Sbjct: 61  EHIDLDNKNIQ---ALIVSPTRELAIQTAEELKKLGRDKHVDVQVVFGGADIRRQIQNLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LDH NR  + + +++ LV+DEAD ML+MGF+  I++I    P  RQT
Sbjct: 118 SHPQILVGTPGRLLDHINRKTVKIEHVKTLVLDEADEMLNMGFLEDIESIIKNTPAERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+ NP+ I++     T + +             +       + 
Sbjct: 178 LLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLV---DQYFVRMRENEKFDTMTRIF 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  I+F   K+ V  L   LE +G+    +HG++ Q+ R ++L+ FK   I ++V
Sbjct: 235 DVQAPKLAIVFGRTKRRVEELARGLEARGYHASGLHGDLTQQMRSRVLAQFKSHEINILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HV+NFD+P   E+Y+HRIGRTGRAG  G + T V+  ++ ++ A+
Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTFVSPNEMDYLRAV 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 EDLTKKRMTALEP 367


>gi|218134053|ref|ZP_03462857.1| hypothetical protein BACPEC_01943 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991428|gb|EEC57434.1| hypothetical protein BACPEC_01943 [Bacteroides pectinophilus ATCC
           43243]
          Length = 559

 Score =  181 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 135/369 (36%), Positives = 221/369 (59%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L +  K++ A+ D G+ + +PIQ K IP+VL+  D+ G AQTGTGKTA++ +PML
Sbjct: 26  LKFEELNVDEKILKAIGDMGFEEASPIQAKAIPVVLEGKDIVGQAQTGTGKTAAYGIPML 85

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++    +++  + ++L PTRELA QVAD   K  K  +    L +  G     Q K L
Sbjct: 86  QSIDP---KLKCVQAVVLCPTRELAIQVADEIRKLAKYMSSIKVLPVYGGQEIVRQIKSL 142

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  +++ TPGR++DH  R  +  + ++++++DEAD MLDMGF   ++ I + +P  RQ
Sbjct: 143 KTGVQIVVGTPGRVMDHMRRKTVKFDKVKMVILDEADEMLDMGFREDMETILTQMPEERQ 202

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++FSATM   +  ++  F  + + I+V     T E I       +   SK    +   L
Sbjct: 203 TVMFSATMPKAIMDIARTFQNDAEVIKVVRKELTVENI---EQYYFEVRSKNKDEILSRL 259

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  ++FCN KK V +L   L+ +G+    IHG++ Q  R +++++F++G  +++
Sbjct: 260 IDIYNPKLSVVFCNTKKQVDDLISELKGRGYFADGIHGDMKQAQRDRVMNDFRKGKTEIL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G AF+ V  ++I  +  
Sbjct: 320 IATDVAARGIDVDDVDIVFNYDLPQDEEYYVHRIGRTGRAGRAGLAFSFVTGKEIYKLKD 379

Query: 360 IEKLIEKKV 368
           IE+  + K+
Sbjct: 380 IERYCKTKI 388


>gi|187957004|gb|AAI58084.1| EG434080 protein [Mus musculus]
          Length = 411

 Score =  181 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 131/378 (34%), Positives = 207/378 (54%), Gaps = 5/378 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L
Sbjct: 38  LTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVL 97

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+
Sbjct: 98  QCLDI---QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD 154

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q 
Sbjct: 155 YGQHVVAGTPGRVFDMIRRRSLPTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 214

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L      
Sbjct: 215 VLISATLPHEILEMTNKFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--Y 272

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IFC  K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  ++++
Sbjct: 273 DTLTITQAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 332

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  I
Sbjct: 333 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 392

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+    ++D +  +L+ L
Sbjct: 393 EQYYSTQIDEMPMNLADL 410


>gi|325184962|emb|CCA19454.1| DEAD box ATPdependent RNA helicase putative [Albugo laibachii Nc14]
          Length = 399

 Score =  181 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 195/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I   +Q  DV   +Q+GTGKTA F + +L 
Sbjct: 27  TFESMGLKEDLLRGIYAYGFEKPSAIQQRAIKPAVQGRDVIAQSQSGTGKTAVFSISILQ 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +    L++ PTRELA Q        G   N+     IGG       ++L+ 
Sbjct: 87  TINSTSNETQA---LVISPTRELAEQTQKVMLALGDYMNVQCHACIGGKSMGEDMRRLDY 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGRI D   R  L    I++LVIDEAD ML+ GF   I +I   +P + Q L
Sbjct: 144 GVQVVSGTPGRIFDMIRRRHLRTRTIKLLVIDEADEMLNKGFKDQIYDIYRYLPPSTQVL 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SATM  ++  ++  F+  P ++ V     T E I+  FVA   +  K   L       
Sbjct: 204 VVSATMPQDVLDLTTKFMNEPVKVLVKRDELTLEGIKQFFVAVEQEEWKFDTLCDL--YD 261

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ QR R  I+  F+ G  ++++ 
Sbjct: 262 TLTITQAVIFCNTKRKVDWLTTKMREANFTVSSMHGDMPQRERDTIMQEFRSGGSRVLIT 321

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+  RGLD+  V  V  +D+PN  E YIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 322 TDIWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKDEDVRILRDIE 381

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 382 QYYSTQIDEMPMNIADL 398


>gi|253573302|ref|ZP_04850645.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251846830|gb|EES74835.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 518

 Score =  181 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 154/396 (38%), Positives = 236/396 (59%), Gaps = 12/396 (3%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ FAD GL PKV+ A+ + G+ + TPIQ K+IP+ L   D+ G AQTGTGKTA+F LP+
Sbjct: 1   MNTFADFGLEPKVLQAITELGFEEATPIQAKSIPIALSGRDLIGQAQTGTGKTAAFGLPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  + K   R+     L++ PTRELA QVA+   K  +        + GG     Q + L
Sbjct: 61  INKIPKEEDRIV---ALVMTPTRELAIQVAEEIGKLSRFKGTRSLPIYGGQDIVRQIRAL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   ++I TPGR+LDH NR  + +++++ +V+DEAD MLDMGF+  IQ+I  LVP  RQ
Sbjct: 118 KKKPQIIIGTPGRLLDHINRKTIKLDDVKTVVLDEADEMLDMGFMDDIQSILKLVPEDRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   +QK+++ FL+NP+ + V     +A  I     A    + ++       L
Sbjct: 178 TMLFSATMPANIQKLAQQFLKNPEHVSVIPKQVSAPLI---DQAYIEVHERQKFDALTRL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              ++ +  I+F   K+ V  L  +L+KQG+S   +HG++ Q  R  ++  F++G+I ++
Sbjct: 235 LDMESPELAIVFGRTKRRVDELSEALQKQGYSADGLHGDLSQNQRDNVMRKFRDGSIDVL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  V HV NFD+P   E+Y+HRIGRTGRAG+ G A++ V   ++ H+  
Sbjct: 295 VATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGVAWSFVTPREMDHLRF 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           IE++   K+         L    E I+  Q   A +
Sbjct: 355 IERITRHKIARKP-----LPSIAEAIEGKQRIIAER 385


>gi|224538852|ref|ZP_03679391.1| hypothetical protein BACCELL_03748 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519527|gb|EEF88632.1| hypothetical protein BACCELL_03748 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 478

 Score =  181 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 156/449 (34%), Positives = 245/449 (54%), Gaps = 14/449 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  + +S  V  A+L+  Y  PT IQ + IP  L   D+ G+AQTGTGKTA+F +P++
Sbjct: 2   MTFKQMNISEPVCRALLEKNYSTPTLIQEQAIPEALTGRDLLGLAQTGTGKTAAFAIPII 61

Query: 61  TI-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  + + +   R  R LIL PTRELA Q+ ++   Y +   L   ++ GG+  ++Q
Sbjct: 62  EQLLADPISQQKGAPRKIRALILTPTRELAIQIDESLADYTRYTTLRHTVIFGGVKQKSQ 121

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G D+L  TPGR+LD  ++G + ++++   V+DEADRMLDMGFI  ++ +   +P
Sbjct: 122 TDELRAGTDILTATPGRLLDLMSQGFIRLDHVRHFVLDEADRMLDMGFIHDVKRLLPKLP 181

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +QTL FSATM D + +++++ L+NP R+EV   SS  E I            K+    
Sbjct: 182 PKKQTLFFSATMPDSIDRLAKSLLRNPARVEVTPASSVVEIISQSVYRVEKPQKKELLAQ 241

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                  +     ++F   K    N+   L ++G +  +IHG+  Q SR + LSNFKEG 
Sbjct: 242 LL---LGEAGHQVLVFSRTKHGADNIARYLSRRGITCESIHGDKSQNSRQRALSNFKEGR 298

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +++A+D+AARG+DI  +  V N+D+P+  E Y+HRIGRTGRAG  G+A    + E++ 
Sbjct: 299 SNVIIATDIAARGIDIKGLDLVLNYDLPDVPETYVHRIGRTGRAGCEGRAIAFCSGEEVP 358

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ-HNHARK-NNPIPQKSTGFDRRKKNY 413
            +  IEKL   K++    DL    PPLE+   A   N ARK     P       +  K  
Sbjct: 359 MLREIEKLTGIKLEQRKHDL----PPLEETKTAPVVNVARKVQAKAPADKQQGKQNNKRR 414

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADS 442
             +K   PLK +++ + + +  + ++  +
Sbjct: 415 EGRKPAEPLKNAQQATVVAEKPKRHNRPA 443


>gi|254491257|ref|ZP_05104438.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxidans
           DMS010]
 gi|224463770|gb|EEF80038.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxydans
           DMS010]
          Length = 442

 Score =  181 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 170/442 (38%), Positives = 251/442 (56%), Gaps = 10/442 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL+  ++ A+ + GY  P+PIQ K IP ++Q HDV   AQTGTGKTA F LP+L
Sbjct: 1   MTFSSLGLADPILQAISEQGYDTPSPIQAKAIPPIMQGHDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G+       R L+L PTRELAAQVAD+ + YGK   L   ++ GG+    Q  +L
Sbjct: 61  HRLASGKPASANQVRALVLTPTRELAAQVADSVQTYGKFLPLRSTVVFGGVKINPQMMRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGAD+L+ TPGR+LD + +  +  +++E+L++DEADRMLDMGFI  I+ I S +P  RQ
Sbjct: 121 RRGADILVATPGRLLDLYQQNAVRFDHLEVLILDEADRMLDMGFIHDIRKIISFLPKKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT + +++ +++  + NP  I V+       T             KK   L   L
Sbjct: 181 NLMFSATFSTDIRSLAKTLVNNPIEISVSP---ANSTATTVKQWIAPVDKKKKPELLSQL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       ++F   K     L   LE  G S  AIHGN  Q +R K L++FK G  Q++
Sbjct: 238 INTHQWTQVLVFSRTKHGANKLTRHLESVGLSAAAIHGNKSQGARTKALADFKAGDKQIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + HV NFD+PN AE+Y+HRIGRTGRAG  G+A +LV+ ++++H+  
Sbjct: 298 VATDIAARGLDIDQLPHVVNFDLPNVAEDYVHRIGRTGRAGATGEAISLVSADEVEHLWN 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE+LI K +  + + G     + P  K+    H    K     + S G +  +++ ++  
Sbjct: 358 IERLIGKNLPREVVEGFEPQHDVPASKL----HQPKHKPRKPKKPSHGHNDGQRSETAHA 413

Query: 418 SHIPLKESEKISKLQQDIQEND 439
                K+    +K  +  +   
Sbjct: 414 QKSHRKQPANAAKPGRSTRRRR 435


>gi|52424550|ref|YP_087687.1| SrmB protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306602|gb|AAU37102.1| SrmB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 613

 Score =  181 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 152/461 (32%), Positives = 248/461 (53%), Gaps = 36/461 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ AV D G+  P+PIQ   IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 6   ITFGDLGLPEFILSAVSDMGFETPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV-ALLIGGIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVA+  E + KN      A L GG  ++ Q + L
Sbjct: 66  AQIDI---EEKHPQMLVMAPTRELAIQVAEACELFTKNAKGVHIATLYGGQRYDIQLRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GA V++ TPGRILDH  RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 RQGAQVVVGTPGRILDHIRRGTLNLSELKFIVLDEADEMLRMGFIDDVETVMAELPAQHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+ +P+ +++ +   T   I             +        
Sbjct: 183 TALFSATMPEPIRRITKRFMTDPQEVKIQSTQRTNPDIAQSCWYVRGYRKNEA---LLRF 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 240 LEVEDFDGAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G A   V   + + +  
Sbjct: 300 VATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRSGSAILFVEPRERRLLSN 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+L++K              P+E++D+  H   +             RR++ +   K+ 
Sbjct: 360 IERLMKK--------------PIEEVDVPNHEALQA------------RRREKF---KAK 390

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
           I  +      +  + + E        + ++ A ML   +GK
Sbjct: 391 ITKQLEHHDLEQYRLLLEGLFTPDQDQEDIAAAMLMLLQGK 431


>gi|260770312|ref|ZP_05879245.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972]
 gi|260615650|gb|EEX40836.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972]
          Length = 632

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 153/463 (33%), Positives = 243/463 (52%), Gaps = 35/463 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ D G+V PTPIQ   IPL+L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNSAILSALTDMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L+  + +   P+ +++ PTRELA QVA   +  G+N      L I  G     Q + L
Sbjct: 66  NKLDLNQYK---PQAIVMAPTRELAIQVAAEVKNLGQNIKGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D  +R +L ++     V+DEAD ML MGF+  +  I    P T Q
Sbjct: 123 KSGAHIVVGTPGRVKDLISRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++ + + FL++P R++V   + T   +E  +         +        
Sbjct: 183 RVLFSATMPPMVKDIVDRFLRDPARVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLET 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 243 EET---DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE++    ++ +        P  +K+  A+                  +      ++K H
Sbjct: 360 IERVTRSSMEEIQ------LPHRDKVAEAR----------------LSQLAIELEAEKEH 397

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
             L++  ++ +  Q   E DA++L       A +L + +GK  
Sbjct: 398 ASLEKFAELVEKLQVSLEIDANTLA------AILLKRQQGKRP 434


>gi|329962827|ref|ZP_08300712.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
 gi|328529384|gb|EGF56297.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
          Length = 428

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 145/432 (33%), Positives = 237/432 (54%), Gaps = 9/432 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+ +V+ A+    + + TPIQ K+IP++L+  D+  +AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELQLNEQVLEALDAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
             L +GR        +I+ PTRELA Q+    E +     ++   + GG     FE Q K
Sbjct: 61  DKLSEGRHPEDSINCIIMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKHLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++ N L NP  +++       +       A Y  Y  +   + +
Sbjct: 181 RQTIMFSATMPAKIQQLANNILNNPAEVKLAVSKPADKI----VQAAYVCYENQKLGIIR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L ++ T +  IIF + K  V  +  +L++   +V  +H +++Q  R +++  FK G I 
Sbjct: 237 SLFAEQTPERVIIFASSKIKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T +++++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQSNF 356

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
             IE  +EK +  +    +L        K           NN    +  G   R+ +   
Sbjct: 357 KNIENFLEKTIYKIPVPEELGEAPEYKPKSGGGSRRKGSYNNSGNGRKKGNGNRRNDDGK 416

Query: 416 QKSHIPLKESEK 427
            K   PLK+  K
Sbjct: 417 AKPKRPLKKETK 428


>gi|329898744|ref|ZP_08272452.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC3088]
 gi|328920765|gb|EGG28222.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC3088]
          Length = 412

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 157/400 (39%), Positives = 235/400 (58%), Gaps = 3/400 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+DLGLSPK++ A+ D GY  PT IQ   I  VLQ  D+   AQTGTGKTA+F LP+L
Sbjct: 1   MNFSDLGLSPKLLQAISDTGYTTPTAIQSAAIGPVLQGKDLMASAQTGTGKTAAFTLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +     + P+ LI+ PTRELAAQ+  + + Y K  +     + GG+    Q ++L+
Sbjct: 61  ETLLRKPNSSKSPKFLIITPTRELAAQIEASAQTYSKYISCRTLAVFGGVKIGPQIRQLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR+LD   +G++ +  I++LV+DEADRMLDMGFIP I+ I  L+P T+QT
Sbjct: 121 QGVDVLIATPGRLLDLSEQGEVDLKMIDVLVLDEADRMLDMGFIPAIRRIQKLLPATKQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT +DE++ +++ +    +R    + +             Y    K+ + + Q L 
Sbjct: 181 LMFSATYSDEIRTLAQTY---LRRPVEVSVTPKNAAAHTVDQLIYPVDKKQKSAVLQYLL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       ++F   K     L   L+K      AIHGN  Q  R K L++FK G I ++V
Sbjct: 238 NNYGWVQVLVFSRTKHGANKLVRELDKANIRAAAIHGNRSQSQRTKALADFKSGKIAVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RG+DI  +  V NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  +++K +  I
Sbjct: 298 ATDIASRGIDIAQLPVVINFDLPNVPEDYVHRIGRTGRAGSNGRAISLVCADEVKQLRDI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           E++I +++     D  +   PL +        + K    P
Sbjct: 358 ERVISRQLPREFIDGFAPQEPLPESPSKPKRPSSKPKSAP 397


>gi|148263694|ref|YP_001230400.1| DEAD/DEAH box helicase domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146397194|gb|ABQ25827.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
           Rf4]
          Length = 447

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 156/451 (34%), Positives = 239/451 (52%), Gaps = 24/451 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F      P V   V  AGY  PTPIQ + IP V+   DV G+AQTGTGKTA+F LP+L
Sbjct: 1   MNFQSFDFHPDVAAGVTAAGYASPTPIQAQAIPPVMLGRDVMGLAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +G  +    R LI+ PTRELA Q+ ++    G+   L    + GG+    Q +KL+
Sbjct: 61  HRLMQG--KQGHVRALIVAPTRELAEQIHESISALGRQTRLRSITVYGGVNINPQIQKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G ++++  PGR+LDH  +G + ++ +E+LV+DEAD+M DMGF P I+ I   +P  RQT
Sbjct: 119 SGVEIVVACPGRLLDHIGQGTIDVSRVEVLVLDEADQMFDMGFFPDIRRILKHLPKQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM DE+++++   L +P  ++V   +         +             L   L 
Sbjct: 179 LLFSATMPDEIRRLAHEVLNDPVTVQVGNTAPPVTVSHALYPVEQH----LKTPLLLELL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++F   K     L   LEK G+   ++ GN+ Q  R   L  F++GT Q++V
Sbjct: 235 RHTDTESVLVFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+D+P+ AE Y+HRIGRTGRA R G AFTLV  ED   + AI
Sbjct: 295 ATDIAARGIDVSQISHVVNYDIPDTAEAYVHRIGRTGRAARSGDAFTLVTSEDTAMVRAI 354

Query: 361 EKLIEKKVDWL------------NGDLSSLNPPLE---KIDIAQHNHARKNNPIPQKSTG 405
           E+ ++  ++                D   + PP E   +  +A      + +P  Q  T 
Sbjct: 355 ERALKSSLERRTVEGFDYSVPAPKKDTEFVRPPREPQNRKPVAAKKGTAQGSPHNQAGTA 414

Query: 406 FDR---RKKNYSSQKSHIPLKESEKISKLQQ 433
             +   R +    Q +H       ++++ ++
Sbjct: 415 KPKATGRAQQQPGQTAHTAGAPQRRVNRSRR 445


>gi|219847371|ref|YP_002461804.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219541630|gb|ACL23368.1| DEAD/DEAH box helicase domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 550

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 146/406 (35%), Positives = 231/406 (56%), Gaps = 9/406 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLS  ++  + + GY +PTPIQ + IPL+L   DV   AQTGTGKTA+F LPM+ 
Sbjct: 3   TFAALGLSDALLHTLRELGYDEPTPIQAQAIPLLLAGRDVIAQAQTGTGKTAAFALPMIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                     + + L+L PTRELA QVA+   +YG++  L V  + GG P E Q + L +
Sbjct: 63  Q----VTDEPVVQALVLAPTRELAVQVAEAVHRYGRHRALRVLPIYGGQPIERQLRGLAQ 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH  RG L  +++ ++V+DEAD MLDMGF   ++ I  L P  RQT 
Sbjct: 119 GVQVVVGTPGRVLDHLRRGTLRFDHLRLVVLDEADEMLDMGFAEELEAILQLTPAERQTA 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +Q ++  + + P R+ +     T   I       Y   ++        +  
Sbjct: 179 LFSATLPPAVQSLTLRYTRQPVRVSIAAEQLTTPHI---RQIYYEILARDKLDALCRVLD 235

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  I+FC  ++ V  +   L+ +G++  ++HG++ Q  R +++  F+EG + ++VA
Sbjct: 236 AEMPQLAIVFCRTRQEVDEIGERLQGRGYAAESLHGDLSQAVRDRVMRRFREGQLDVLVA 295

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI +V HV N+DVP   E+Y+HRIGRTGRAGR G A T +   + + +  IE
Sbjct: 296 TDVAARGLDIAEVSHVINYDVPTDPESYVHRIGRTGRAGRAGVAITFITPRERRMLQTIE 355

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           ++   +++     + +L     +  +A  +  R+    P  ++  D
Sbjct: 356 RVTRTRIERCQ--MPTLADVAARRRLALRDQLREAMQAPGLTSYMD 399


>gi|189425609|ref|YP_001952786.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
 gi|189421868|gb|ACD96266.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 430

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 150/369 (40%), Positives = 223/369 (60%), Gaps = 2/369 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+L L   +  A+   GY  PTPIQ + IP  L   D+   AQTGTGKTA+F++P L
Sbjct: 1   MSFAELNLHASIQKAISVCGYATPTPIQAEAIPQALSGRDLIASAQTGTGKTAAFIIPAL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K       PR L+L PTRELAAQVAD+  +YG+   +    ++GG+P+  Q + L 
Sbjct: 61  ERLAKPGPAGIGPRVLVLTPTRELAAQVADSVARYGRFLRMRYGSIVGGMPYPDQVRLLR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR++DH  RG++ ++ +E+LV+DEADRMLDMGF   +  I +  P  RQT
Sbjct: 121 QPVDLIVATPGRLIDHLERGRIDLSRVELLVLDEADRMLDMGFTDAVDQIAAATPKKRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLF+ATM D + +++   L++P RI +++P    ++IE     T     K    +   L 
Sbjct: 181 LLFTATMDDPMARLAGRLLKDPSRIAISSPKENHDSIEQRMHLTDNLGHK--HKMLHHLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   IIF   K++   L   L  +G S  A+HG++ Q +R + L+N + G ++ +V
Sbjct: 239 EDPTITQAIIFSATKRDADTLARDLYDRGLSAAALHGDMTQGARTRTLTNLRRGKVRFLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + HV NFD+P  AE+Y+HRIGRTGRAG  G A + V+  D  ++  I
Sbjct: 299 ATDVAARGLDINGISHVINFDLPRAAEDYVHRIGRTGRAGATGVAISFVSPADAVYLQRI 358

Query: 361 EKLIEKKVD 369
           ++   + V 
Sbjct: 359 QRYTGQTVQ 367


>gi|225420023|ref|ZP_03762326.1| hypothetical protein CLOSTASPAR_06366 [Clostridium asparagiforme
           DSM 15981]
 gi|225041279|gb|EEG51525.1| hypothetical protein CLOSTASPAR_06366 [Clostridium asparagiforme
           DSM 15981]
          Length = 552

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 158/461 (34%), Positives = 249/461 (54%), Gaps = 18/461 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL + P+++ A+ +  Y  PTPIQ + IP+VL   D+ G AQTGTGKTA+F +P L
Sbjct: 1   MQFKDLNIMPEILRALKNENYKIPTPIQEEAIPVVLSGRDLLGCAQTGTGKTAAFAIPTL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +    E  R   R  + L++ PTRELA Q+ D+F  YG+  +L   ++ GG+  + Q +
Sbjct: 61  QMLSGEETPRWEKRTIKALVVTPTRELAIQIYDSFNTYGQFTDLKSCVVYGGVSQKPQEE 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+RG D+L+ TPGR+LD  ++  + +  I+ILV+DEADRMLDMGFI  ++ I +  P  
Sbjct: 121 NLKRGVDILVATPGRLLDLMDQKIVNIEKIKILVLDEADRMLDMGFIHDVKKIIARTPAE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTL FSATM  ++ K++   L+NP++IE+   ++T E IE           K       
Sbjct: 181 KQTLFFSATMPPDIAKLAAKILKNPEKIEITPAATTVEAIEQYLYFVDKGNKKDL---LL 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +     + + ++F   K     +   L K      AIHG+  Q +R + L++FK+  ++
Sbjct: 238 HILKTKDLDSTLVFTRTKHGADRVVRQLSKSNVVAQAIHGDKSQGARQRALNDFKDKKLR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A +    ++   +
Sbjct: 298 VLVATDIAARGIDIDELACVVNYDLPDVPETYVHRIGRTGRAGLEGIAISFCDFDEKAQL 357

Query: 358 DAIEKLIEKKVDWL---NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK--- 411
             IEKLI KK+  +      L +  P ++     +    R +     +     + KK   
Sbjct: 358 ADIEKLIGKKLTEVADHPYPLQNNFPSVKATQPKRGGGKRADQAGAAQGPAKKKEKKAVP 417

Query: 412 ------NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFR 446
                    S+KS      + K S+  + +Q     S G R
Sbjct: 418 GTVESEERLSKKSQSTGARTPKKSRPSEALQSKKTSSQGSR 458


>gi|167855120|ref|ZP_02477892.1| intracellular septation protein A [Haemophilus parasuis 29755]
 gi|167853755|gb|EDS24997.1| intracellular septation protein A [Haemophilus parasuis 29755]
          Length = 603

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 137/373 (36%), Positives = 222/373 (59%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   ++ +V + G+V P+PIQ   IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 6   LTFADLGLPQSILNSVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++      R P+ L++ PTRELA QVAD  E++ KN   +    + GG  ++ Q + L
Sbjct: 66  AQIDP---EQRHPQMLVMAPTRELAIQVADACEQFSKNMKGIRTVTIYGGQRYDIQIRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  V++ TPGRILDH  RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 KNGVQVVVGTPGRILDHIRRGTLDLSMLKAIVLDEADEMLRMGFIEDVETVMAELPEDHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+++P+ +++     +A  I   +                  
Sbjct: 183 TALFSATMPEPIRRITKRFMKDPQEVKIQATQRSAPDIAQSYWLVNGFRKNDA---LLRF 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++    E+ G+   A++G++ Q++R + L   K G + ++
Sbjct: 240 LEVEEFDAAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQAREQALEKLKSGRLDVI 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 300 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLKN 359

Query: 360 IEKLIEKKVDWLN 372
           IE LI+K +D + 
Sbjct: 360 IEHLIKKPIDEVP 372


>gi|150376621|ref|YP_001313217.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150031168|gb|ABR63284.1| DEAD/DEAH box helicase domain protein [Sinorhizobium medicae
           WSM419]
          Length = 498

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 164/455 (36%), Positives = 250/455 (54%), Gaps = 10/455 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS +++  +   G+ KPTPIQ + IPLVLQ  D+ G+AQTGTGKTA+F LPM+ 
Sbjct: 3   TFKELGLSQEILATLTANGFEKPTPIQTQAIPLVLQGRDLIGLAQTGTGKTAAFGLPMIE 62

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L+    R   R  R LIL PTREL  Q+A N + + K   + V +++GG+    Q ++L
Sbjct: 63  KLQADGKRPDPRNIRALILAPTRELVNQIATNLKLFVKKTPIKVGVVVGGVSINKQTEQL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD  +R  + +     LV+DEAD+MLD+GFI  ++ I  LVP  RQ
Sbjct: 123 ARGVDILVATPGRLLDLISRKAVTLTQGRYLVLDEADQMLDLGFIHDLRKIAKLVPKNRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + +++  +L +P ++EV  P   A+ +E        +  K      +  
Sbjct: 183 TLLFSATMPKLIAELAGEYLTDPVKVEVTRPGKAADKVEQYVHFVPGKDLKTTI--LKQT 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +     ++F   K     L   L++ GF   +IHGN  Q  R + L  F++G I+++
Sbjct: 241 LTANPDGLSLVFSRTKHGAEKLMKHLDQVGFKAASIHGNKSQGQRERALKAFRDGEIRVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V HV+N+D+P  A+ Y+HRIGRT R GR G A    A ++I+ +  
Sbjct: 301 VATDVAARGIDIPGVTHVYNYDLPEVADAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRD 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IEKL+  ++   +G++ +      K    + N   + N   Q+  G  R +    S    
Sbjct: 361 IEKLMGIEIAVASGEVPADQARPSKGRGGRGNAQSRGNGAGQRQGGPRRDRPQRQSAAGG 420

Query: 420 IPLKESEKISKLQQDIQEN------DADSLGFRGN 448
               E  +  + QQ  + +      D    G R +
Sbjct: 421 FAGDELLRDDRSQQHERRDHRAPGQDGRPEGNRNH 455


>gi|145299438|ref|YP_001142279.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852210|gb|ABO90531.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 613

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 147/406 (36%), Positives = 228/406 (56%), Gaps = 15/406 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL+  V+ A+ D GY +P+PIQ   IP ++  HD+ G AQTGTGKTA+F LP+L+ 
Sbjct: 10  FSELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTAAFALPLLSR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-ER 121
           LE G    +    L+L PTRELA QVA+  ++Y K+      L I G        +   R
Sbjct: 70  LEAGNRNTQ---VLVLAPTRELALQVAEACQRYAKHMPDFHVLPIYGGSSYETQTRALRR 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++D   R  L ++ ++ LV+DEAD ML MGFI  +  I    P TRQ  
Sbjct: 127 GAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCPSTRQVA 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D++++V++  L+ PK I++ + +STA TI   +      +          ++ 
Sbjct: 187 LFSATMPDQIRRVAQKHLKQPKEIKIVSKTSTAPTIRQRYWQVTGLHKLDAMTRLLEVEP 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + +   ++F   K     L   L  +G +  A+HG+I Q+ R + +   ++G + +++A
Sbjct: 247 YEAV---LVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   VA  + + + AIE
Sbjct: 304 TDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIE 363

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
               + ++ +        P  E  DI QH   +    I +   G +
Sbjct: 364 HATRQAIEPMKM------PSTE--DINQHRMTKFKERIRETMMGEE 401


>gi|330829254|ref|YP_004392206.1| DEAD/DEAH box helicase domain-containing protein [Aeromonas veronii
           B565]
 gi|328804390|gb|AEB49589.1| DEAD/DEAH box helicase domain protein [Aeromonas veronii B565]
          Length = 633

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 149/406 (36%), Positives = 233/406 (57%), Gaps = 15/406 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL+  V+ A+ D GY +P+PIQ   IP ++  HD+ G AQTGTGKTA+F LP+L+ 
Sbjct: 10  FSELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTAAFALPLLSR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           LE G    +    L+L PTRELA QVA+  ++Y  +      L I  G  +E Q + L R
Sbjct: 70  LEAGNRNTQ---ILVLAPTRELALQVAEACQRYAHHMPDFHVLPIYGGASYETQTRALRR 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++D   R  L ++ ++ LV+DEAD ML MGFI  +  I    P TRQ  
Sbjct: 127 GAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCPSTRQVA 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +++++V++  L+ PK I++ + ++TA TI   +      +          ++S
Sbjct: 187 LFSATMPEQIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQVTGLHKLDAMTRLLEVES 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + +   ++F   K     L   L  +G +  A+HG+I Q+ R + +   ++G + +++A
Sbjct: 247 YEAL---LVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   VA  + + + AIE
Sbjct: 304 TDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIE 363

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
               + ++ +        P  E  DI QH  A+    I +   G +
Sbjct: 364 HATRQAIEPMKM------PSTE--DINQHRLAKFKERIRETMMGEE 401


>gi|90961336|ref|YP_535252.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
 gi|90820530|gb|ABD99169.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
          Length = 492

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 169/485 (34%), Positives = 255/485 (52%), Gaps = 49/485 (10%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ AV  +G+ + TPIQ +TIPLVL  +DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFGELGLDKSLLKAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-L 119
             L+    +++     I+ PTRELA Q  +     GK     V ++ GG     Q K+  
Sbjct: 61  QQLDLDLRQIQAV---IISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLE 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +L+ TPGR+LDH  RG + + +++ L++DEAD MLDMGF+  I+ I   VP  RQ
Sbjct: 118 QHTPHILVGTPGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E+ K+ E F+ NP+ +++     T + ++  FV T               
Sbjct: 178 TLLFSATMPKEILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRL--- 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  I+F   K+ V  L   LE +G++   IHG++ Q+ RM +L  FK G + ++
Sbjct: 235 IDVQAPELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG HG + T V   ++ ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRV 354

Query: 360 IEKLIEKKVDWLNG----------------DLSSL-------------NPPLEKIDIAQH 390
           IEKL +K++D L                  D+  L                LE+ D  + 
Sbjct: 355 IEKLTKKRMDPLKPPTQDEAFIGQVSSALDDIKDLIADTDTERYEAQAQALLEQYDAVEV 414

Query: 391 NHARKNNPIPQKSTG----------FDRRKKNYSS---QKSHIPLKESEKISKLQQDIQE 437
             A  NN   + ++             RRKK   +   ++ +   K S++ +K  +  ++
Sbjct: 415 VAAFLNNMTKKDASDVPVKITPEKPLPRRKKGRRNGNYRRGNDNFKRSKRFNKHDRKNRD 474

Query: 438 NDADS 442
           N   S
Sbjct: 475 NKRRS 479


>gi|288556913|ref|YP_003428848.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288548073|gb|ADC51956.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 539

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 148/382 (38%), Positives = 227/382 (59%), Gaps = 9/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  +S  +  A+ D G+ +P+PIQ K IP++L+  DV G AQTGTGKTA+F +P++  
Sbjct: 4   FSDFQISEPIKRAIKDMGFEEPSPIQEKAIPVILEGGDVIGQAQTGTGKTAAFGIPVIDK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                   R  + LIL PTRELA QV+   +K   +  +    + GG     Q K L++G
Sbjct: 64  ----VTEERYVQALILTPTRELAIQVSGELQKLSAHKRIRTMPIYGGQSIGHQIKALKQG 119

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGRILDH  R  L +N +  +V+DEAD MLDMGF+  I++I   V   RQTLL
Sbjct: 120 VQVVIGTPGRILDHIRRKTLQLNKVHTIVLDEADEMLDMGFVDDIESILREVKGARQTLL 179

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   ++K+S  ++  PK + +N    TA +I       Y    +        +   
Sbjct: 180 FSATMPPAIKKLSRRYMTTPKTVTINKGEVTAPSI---DQLYYKVLERNKIDSLCRIIDS 236

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           + +  GI+FC  KK V  L  +L+ +G+    +HG++ Q  R  ++  F++ +I+ ++A+
Sbjct: 237 EEVDLGILFCRTKKGVAELTEALQARGYLADGLHGDLTQSQRDAVMKKFRDSSIEFLIAT 296

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+D+ +V HV N+D+P   E+Y+HRIGRTGRAGR G A TLV   ++KH+ +IE+
Sbjct: 297 DVAARGIDVDNVTHVINYDIPQDPESYVHRIGRTGRAGRKGLALTLVTPREMKHLRSIEQ 356

Query: 363 LIEKKVDWLNGDLSSLNPPLEK 384
            I+  +   + D+ ++   +EK
Sbjct: 357 EIKMAIP--SQDVPTIEDVVEK 376


>gi|117621384|ref|YP_857155.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117562791|gb|ABK39739.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 642

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 147/406 (36%), Positives = 231/406 (56%), Gaps = 15/406 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL+  V+ A+ D GY +P+PIQ   IP ++  HD+ G AQTGTGKTA+F LP+L+ 
Sbjct: 21  FSELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTAAFALPLLSR 80

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           LE G    +    L+L PTRELA QVA+  ++Y  +      L I  G  +E Q + L R
Sbjct: 81  LEAGNRNTQ---ILVLAPTRELALQVAEACQRYAHHMPDFHVLPIYGGASYETQTRALRR 137

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++D   R  L ++ ++ LV+DEAD ML MGFI  +  I    P  RQ  
Sbjct: 138 GAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCPAGRQVA 197

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +++++V++  L+ PK I++ + ++TA TI   +      +          ++ 
Sbjct: 198 LFSATMPEQIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQVTGLHKLDAMTRLLEVEP 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + +   ++F   K     L   L  +G +  A+HG+I Q+ R + +   ++G + +++A
Sbjct: 258 YEAL---LVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIA 314

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   VA  + + + AIE
Sbjct: 315 TDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIE 374

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
               + ++ +        P  E  DI QH  A+    I +   G +
Sbjct: 375 HATRQAIEPMKM------PSTE--DINQHRLAKFKERIRETMMGEE 412


>gi|42518357|ref|NP_964287.1| RNA helicase [Lactobacillus johnsonii NCC 533]
 gi|41582642|gb|AAS08253.1| probable RNA helicase [Lactobacillus johnsonii NCC 533]
          Length = 484

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 146/394 (37%), Positives = 229/394 (58%), Gaps = 15/394 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+++ L P+++ A+  +G+ + TPIQ KTIPLVL+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+K    ++     I+EPTRELA Q  +   + G++    V ++ GG     Q + L+
Sbjct: 61  QNLDKQHDSIQAI---IIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGR+LDH  RG + ++ ++ +V+DEAD MLDMGFI  I++I        QT
Sbjct: 118 QTPAILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILKYASSKHQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + ++ E F+ +P+ +++     TA  I             +   +   L 
Sbjct: 178 LLFSATMPKPILRIGEKFMNDPEIVKIKGKELTANLI---DQYFVRAKENEKFDILCRLI 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF   K+ V  L   L+ +G++   IHG++ Q  RM +L  F++G + ++V
Sbjct: 235 DVQNPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P    +Y+HRIGRTGRAG++G + T V   +I ++  I
Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPNSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTI 354

Query: 361 EKLIEKKV---------DWLNGDLSSLNPPLEKI 385
           E+L  KK+         +   G LS+ N  + ++
Sbjct: 355 EQLTHKKMMPLKPPTDEEAFKGQLSAANKKVAEL 388


>gi|56477513|ref|YP_159102.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
 gi|56313556|emb|CAI08201.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
          Length = 508

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 170/463 (36%), Positives = 260/463 (56%), Gaps = 22/463 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA LGL+  ++ A+ ++GY  PTPIQ + IPLVL   D+   AQTGTGKTA F LP+L 
Sbjct: 6   NFAGLGLAEPLLRAISESGYTTPTPIQAQAIPLVLAGGDLLAAAQTGTGKTAGFTLPVLH 65

Query: 62  I---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                     +   PR LIL PTRELAAQV ++   YGK+   T  ++ GG+    Q + 
Sbjct: 66  RLSAAPAANPKAGRPRCLILTPTRELAAQVEESVRTYGKHLPTTSMVMFGGVGINPQIQA 125

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++  D+L+ TPGR+LDH  +  L ++ +EIL++DEADRMLDMGFI  I+ I +L+P  R
Sbjct: 126 LKKRVDILVATPGRLLDHVGQKTLDLSGVEILILDEADRMLDMGFIRDIRKILALLPKQR 185

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +DE++ ++   L NP  +EV   ++ +E ++    +   +  +   +    
Sbjct: 186 QNLLFSATFSDEIRSLANGLLHNPGCVEVARRNTASELVQQSVYSVAQKQKRDLLVHL-- 243

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q+     ++F   K     L   L K G    AIHGN  Q +R + L+ FK+G++ +
Sbjct: 244 -VKQNDWHQVLVFTRTKHGANKLAEYLAKHGIPSAAIHGNKSQSARTRALAEFKDGSLPV 302

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAG  G A + V  E+ +H+ 
Sbjct: 303 LVATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGSSGAAVSFVDSEERQHLT 362

Query: 359 AIEKLIEKKVDW----------LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           AIE+LI++ +D           ++ + S   PP +    ++HN+A   N   Q  T    
Sbjct: 363 AIERLIKRTIDREALPAFAIAPVDPNESDARPPRQPRQPSRHNNA---NAPRQARTDRPA 419

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
            ++      S  P++  +  +      +   ++    RG+  A
Sbjct: 420 GRQATPPSPSRAPVRSRDADN---FGNRAPRSEVEAKRGHPDA 459


>gi|326693280|ref|ZP_08230285.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
           [Leuconostoc argentinum KCTC 3773]
          Length = 518

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 149/373 (39%), Positives = 221/373 (59%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+   GYV+ TPIQ KTIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    LI+ PTRELA Q AD  +K G + ++ V ++ GG     Q + L+
Sbjct: 61  ENIDLDNKNIQ---ALIVSPTRELAIQTADELKKLGHDKHVDVQVVFGGADIRRQIQNLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LDH NR  + ++ ++ LV+DEAD ML+MGF+  I+ I    P  RQT
Sbjct: 118 SHPQILVGTPGRLLDHINRKTVKIDQVKTLVLDEADEMLNMGFLDDIEAIIKNTPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+ NP+ I++     T + +             +       + 
Sbjct: 178 LLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLV---DQYFVRARDNEKFDTMTRIL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K+ V  L   LE +G+    +HG++ Q+ R ++LS FK   I ++V
Sbjct: 235 DVQAPTLAIVFGRTKRRVEELARGLEARGYHAAGLHGDLTQQMRSRVLSQFKSHEINILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HV+NFD+P   E+Y+HRIGRTGRAG  G + T VA  ++ ++ AI
Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAEGVSVTFVAPNEMDYLRAI 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 EDLTKKRMTPLEP 367


>gi|219870715|ref|YP_002475090.1| cold-shock DEAD box protein A-like protein [Haemophilus parasuis
           SH0165]
 gi|219690919|gb|ACL32142.1| cold-shock DEAD box protein A-like protein [Haemophilus parasuis
           SH0165]
          Length = 603

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 138/373 (36%), Positives = 223/373 (59%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   ++ +V + G+V P+PIQ   IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 6   LTFADLGLPQSILNSVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++      R P+ L++ PTRELA QVAD  E++ KN   +    + GG  ++ Q + L
Sbjct: 66  AQIDP---EQRHPQMLVMAPTRELAIQVADACEQFSKNMKGIRTVTIYGGQRYDIQIRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA V++ TPGRILDH  RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 KNGAQVVVGTPGRILDHIRRGTLDLSMLKAIVLDEADEMLRMGFIEDVETVMAELPEDHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+++P+ +++     +A  I   +                  
Sbjct: 183 TALFSATMPEPIRRITKRFMKDPQEVKIQATQRSAPDIAQSYWLVNGFRKNDA---LLRF 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++    E+ G+   A++G++ Q++R + L   K G + ++
Sbjct: 240 LEVEEFDAAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQAREQALEKLKSGRLDVI 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 300 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLKN 359

Query: 360 IEKLIEKKVDWLN 372
           IE LI+K +D + 
Sbjct: 360 IEHLIKKPIDEVP 372


>gi|313217515|emb|CBY38596.1| unnamed protein product [Oikopleura dioica]
 gi|313229431|emb|CBY24018.1| unnamed protein product [Oikopleura dioica]
          Length = 401

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 132/377 (35%), Positives = 208/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G+   ++  +   G+ KP+ IQ + I  +++  DV   AQ+GTGKTA+F +  L 
Sbjct: 29  TFDSMGIREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQAQSGTGKTATFSISTLQ 88

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+     VR  + LIL PTRELA QV       G   N+   + IGG       +KL+ 
Sbjct: 89  VLDTS---VRETQALILCPTRELAQQVQKVILALGDYMNVQAHVCIGGTNVGEDIRKLDF 145

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR  D   R  L   NI++L++DEAD ML+ GF   I ++   +P   Q  
Sbjct: 146 GQHVVVGTPGRTFDMIRRRNLRTRNIKLLILDEADEMLNRGFKEQIYDVYRYLPPATQVC 205

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 206 LVSATLPHEILEMTHKFMSDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFC+ K+ V  L   + +  F+V A+HG++ Q+ R +I+  F+ G  +++++
Sbjct: 264 TLTITQAVIFCSTKRKVDWLAEKMREANFTVSAMHGDMPQKERNEIMREFRSGQTRVLIS 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 324 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVRNDDIRILRDIE 383

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 384 QYYSTQIDEMPMNVADL 400


>gi|308050173|ref|YP_003913739.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307632363|gb|ADN76665.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 499

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 177/434 (40%), Positives = 249/434 (57%), Gaps = 7/434 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLSP++  AV D GY +P+PIQ + IP +L   DV   AQTGTGKTA F LPML
Sbjct: 1   MPFASLGLSPELARAVADKGYREPSPIQAQAIPAILAGKDVMAAAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G   R    R L+L PTRELAAQVA++ + YG+N  L   ++ GG+    Q + L
Sbjct: 61  QNLSRGTRARSNRVRALVLTPTRELAAQVAESVQTYGQNLPLRSVVVFGGVSINPQMQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGADVL+ TPGR+LD F++  +   ++E+LV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RRGADVLVATPGRLLDLFSQNAVKFEDLELLVLDEADRMLDMGFIRDIRKILALLPKRRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E+++++   L  P  ++V+  +STA T+                      
Sbjct: 181 NLLFSATFSGEIRELARGLLNQPVEVDVSPRNSTARTVVQRLHPVDKGRKPALISKL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      +IF   K     L   LE+ G    AIHGN  Q +R + L+ FK+GT+Q +
Sbjct: 238 IREHNWHQVLIFTRTKHGANRLAQKLERDGIQAAAIHGNKSQGARTRALAGFKDGTVQAL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+P  AE+Y+HRIGRTGRAG  G+A +LV  E+ K + A
Sbjct: 298 VATDIAARGLDIHQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGQAISLVCAEEFKLLQA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IEKLI+K ++ +  +L+   P  E + + + +  +        +   D R K        
Sbjct: 358 IEKLIQKPIERV--ELAGFEPQ-EPLPVPRQHGNQPKRTDAAAAPKRDNRSKPRKEGDKP 414

Query: 420 IPLKESEKISKLQQ 433
               E  +  +  Q
Sbjct: 415 AGNDEQPRSRRRPQ 428


>gi|317129136|ref|YP_004095418.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315474084|gb|ADU30687.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 528

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 154/384 (40%), Positives = 229/384 (59%), Gaps = 9/384 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  +S  +  A+ D G+  P+PIQ K IP +L+ HDV G AQTGTGKTA+F +P+L
Sbjct: 2   MKFEDFQISNDIKKAIKDMGFEAPSPIQEKVIPEILKGHDVIGQAQTGTGKTAAFGIPLL 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +   R      ++LIL PTRELA QVA   +K  K     +  + GG     Q K L+
Sbjct: 62  EKVTSDRQ----VQSLILTPTRELAIQVAGELQKLSKFKRSQILPIYGGQSIGHQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR+LDH NR  L + ++  L++DEAD MLDMGFI  I+ I   V   RQT
Sbjct: 118 RGVQVVVGTPGRVLDHLNRKTLQLRSVHTLILDEADEMLDMGFIEDIEKILQQVNTNRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++K+S  ++ NPK++ ++    TA +I       +    K        + 
Sbjct: 178 MLFSATMPPPIRKLSNKYMNNPKQVTISKGEVTAPSINQ---VYFKVLEKNKLDSLCRVI 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +T+  GIIFC  KK V  L  +L+ +G+    +HG++ Q  R  ++  F++ +I+ ++
Sbjct: 235 DSETIDLGIIFCRTKKGVAELTEALQARGYMADGLHGDLTQSQRDIVMKKFRDSSIEFLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ +V HV N+D+P   E+Y+HRIGRTGRAGR G A TLV   ++KH+ +I
Sbjct: 295 ATDVAARGIDVENVSHVINYDIPQDPESYVHRIGRTGRAGREGVAVTLVTPREMKHLRSI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E  I+  +   +  + S+   +EK
Sbjct: 355 EAEIKMTIP--SQRIPSVEEVVEK 376


>gi|163789886|ref|ZP_02184322.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
 gi|159874826|gb|EDP68894.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
          Length = 527

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 145/371 (39%), Positives = 220/371 (59%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+P+++ +V   G+ + TPIQ +TIPL L+  DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFSELGLAPELLKSVERLGFEEATPIQGQTIPLALEGKDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    L++ PTRELA Q  +   +  ++  + V ++ GG     Q + L+
Sbjct: 61  QKIDVNNRNVQ---GLVIAPTRELAIQTQEELFRLSRDKKVRVQVVYGGADISRQIRALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  L + ++E LV+DEAD ML+MGFI  I+ I   VP  RQT
Sbjct: 118 DAPHIVVGTPGRLLDHIKRKTLKLGHVETLVLDEADEMLNMGFIDDIETIIHEVPAERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F++ P+ +++   + +   IE  FV                  
Sbjct: 178 LLFSATMPPAIKRIGVRFMKEPEHVQIKATTMSDSLIEQFFVRCKDFEKFDIMTRL---F 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  IIF   K+ V  L   LE +G+    IHG++ Q+ RM +L  FK G + ++V
Sbjct: 235 DVQTPELTIIFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLKAFKTGKLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T +   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGVSVTFITPNEMGYLRVI 354

Query: 361 EKLIEKKVDWL 371
           E L +K +  L
Sbjct: 355 EDLTKKAMTPL 365


>gi|291614701|ref|YP_003524858.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291584813|gb|ADE12471.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 450

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 169/432 (39%), Positives = 258/432 (59%), Gaps = 10/432 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL L+P ++ A+ +AGYV PTPIQ + IPL L+ HD+   AQTGTGKTA+F LPML
Sbjct: 4   VSFVDLKLAPPILKALTEAGYVTPTPIQAQAIPLALEGHDLMAGAQTGTGKTAAFALPML 63

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L    +    P        IL PTRELA QV ++ + Y K+ NL   ++ GG+  + Q
Sbjct: 64  QKLLPHASASTSPAKHPVRALILVPTRELAVQVEESVKAYAKHTNLRSLVVYGGVDIKTQ 123

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G ++L+ TPGR+LDH  +  +L+N +++LV+DEADRMLDMGF+P ++ I +L+P
Sbjct: 124 TPHLKTGVEILVATPGRLLDHIEQKTVLLNQVQMLVLDEADRMLDMGFMPALKRILALLP 183

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ+L+FSAT ++E++K+SE+F+  P  IEV   +++AE I             +    
Sbjct: 184 RQRQSLMFSATFSNEIKKLSEDFMNYPTLIEVARSNASAENITQKVYLVEQSGKHQLLAQ 243

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                  D  K  I+F   K     L   L+++G S  AIHG+  Q  RM+ L  FK+G 
Sbjct: 244 LL---RGDDAKQVIVFTKTKLTASRLAKQLQREGVSADAIHGDKSQLERMQALDAFKQGR 300

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + +++A+D+AARGLDI  +  V N+++P+ AE+Y+HRIGRTGRAG  G A +LV+ E+ K
Sbjct: 301 VAVLIATDVAARGLDIDSLPMVINYEIPHAAEDYVHRIGRTGRAGASGTAISLVSPEEEK 360

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           ++  IEKLI+K++     D+ + +    + +  + N    + P P+K +      K Y  
Sbjct: 361 YLLEIEKLIKKEIQKERVDMPAPDARPHRAEPRERNREY-HAPAPKKPSHDPWFDKPYVP 419

Query: 416 Q-KSHIPLKESE 426
              +  P+K+ E
Sbjct: 420 NISAEAPVKKPE 431


>gi|331005516|ref|ZP_08328893.1| ATP-dependent RNA helicase [gamma proteobacterium IMCC1989]
 gi|330420663|gb|EGG94952.1| ATP-dependent RNA helicase [gamma proteobacterium IMCC1989]
          Length = 410

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 153/403 (37%), Positives = 230/403 (57%), Gaps = 10/403 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+ L  SP++  A+   GY K TPIQ + I    +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MNFSSLDFSPEIQKAITGCGYEKMTPIQEQAIVPARRGRDVLACAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             +     +   V  PR LIL PTRELA Q+A+    Y K+   T+    GG+    Q  
Sbjct: 61  QQMIDKSRKSEEVNTPRALILTPTRELAEQLANTIGAYAKHLPFTIVAAYGGVKISKQAA 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           K     D+LI TPGR+L+   +    + N+E +V+DEADRMLDMGF+  +Q +       
Sbjct: 121 KFSSDVDILIATPGRLLELVTQCHTHLANVEFVVLDEADRMLDMGFVNDVQTLLKGTAKN 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT++  + ++S   L+N   I V   +STA+TIEH     Y    K+   L  
Sbjct: 181 RQCLLFSATLSAGVNELSHKLLKNHLEIRVTKANSTADTIEH---IVYPIEEKRKIALFN 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +      ++F + K    +L  SL++        HG+  Q +R + L++FK   IQ
Sbjct: 238 ELLEEYNWYQVLVFTSTKGQADSLLASLKENKIPAAICHGDKTQGARRRALADFKSAKIQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+++AARGLDI  + +V N+++P  AE+Y+HRIGR GRAG  G A +LV++E+ +++
Sbjct: 298 VLIATEVAARGLDIQGLEYVVNYNLPFLAEDYVHRIGRAGRAGNKGYAISLVSREEERNL 357

Query: 358 DAIEKLIEKKVDWLN---GDLSSLNPPLEKIDIAQHNHARKNN 397
           DAI++LI +KV  +N    ++      +EKI+  +    RKN 
Sbjct: 358 DAIQRLIGQKVKRINRAGYEVQQRRALVEKIETEKRT-GRKNR 399


>gi|15889610|ref|NP_355291.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
 gi|15157502|gb|AAK88076.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
          Length = 502

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 168/439 (38%), Positives = 251/439 (57%), Gaps = 9/439 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS K+V +V   GY  PTPIQ K IPL+L+  D+ G+AQTGTGKTA+F LP++ 
Sbjct: 15  SFNELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 74

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +L K   R   R  RTLIL PTREL  Q+ DN   + K   L +  ++GG     Q  +L
Sbjct: 75  MLMKQADRPANRTTRTLILAPTRELVNQIGDNLRSFVKKTPLRINQVVGGASINKQQLQL 134

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G D+L+ TPGR+LD   R  + ++ +  LV+DEAD+MLD+GFI  ++ I+ +VP  RQ
Sbjct: 135 EKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISRMVPPKRQ 194

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + +++ NFL +P ++EV  P   A+ +E        +  K    L +  
Sbjct: 195 TLLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTD--LLKKS 252

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++     I+F   K     L   LE  GF V +IHGN  Q  R + L  FK+G I+++
Sbjct: 253 LNENPDGRSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVL 312

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V HVFN+D+P   + Y+HRIGRT RAGR G A    A ++ + +  
Sbjct: 313 VATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHD 372

Query: 360 IEKLIEKKVDWLNGDLSS-LNPPLEKIDIAQHNHARKNNPIPQKSTGFD----RRKKNYS 414
           IEKL++  +   +G+  + L  P    +     +     P   +  G      R  +N++
Sbjct: 373 IEKLMKIDIPVASGERPAGLASPTRPNNNRGGRNNNGGQPRGPREGGRHNGESRPSRNHA 432

Query: 415 SQKSHIPLKESEKISKLQQ 433
            + +   L+ +    +++Q
Sbjct: 433 PRDADNDLEVTSDFKRVKQ 451


>gi|312963578|ref|ZP_07778059.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
 gi|311282087|gb|EFQ60687.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
          Length = 628

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 173/489 (35%), Positives = 262/489 (53%), Gaps = 40/489 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+ 
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 60  ------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                     +  R   R PR L+L PTRELAAQV D+F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRSL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITHGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G+++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GSVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSL----NPPLEKIDIAQHNHARKNNPIPQK---- 402
            K + +IE++ ++K+   D +  D S++        E+ D+    + R            
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDSSAVEAEKPEARERPDVRNPRNPRGPKGDGPNGGGG 417

Query: 403 ------------------STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLG 444
                             + G   R       +   P +E  + S+  +   +   D   
Sbjct: 418 GGGRRDKGKDKGGKEKAPTNGRGERPAREQKPREGTPAREQRQPSQPPRAAADRAPDEF- 476

Query: 445 FRGNMPAFM 453
              ++  F 
Sbjct: 477 LDDDVDNFG 485


>gi|270156904|ref|ZP_06185561.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
           D-4968]
 gi|289164670|ref|YP_003454808.1| ATP-dependent RNA helicase RhlE [Legionella longbeachae NSW150]
 gi|269988929|gb|EEZ95183.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
           D-4968]
 gi|288857843|emb|CBJ11689.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
           NSW150]
          Length = 421

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 160/428 (37%), Positives = 237/428 (55%), Gaps = 21/428 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGL   ++ ++ + GY +P+ IQI+ IP +L   DV   AQTGTGKTASFVLP+ 
Sbjct: 1   MSFKSLGLIEPLLQSIDELGYKEPSSIQIQAIPKILSGKDVLASAQTGTGKTASFVLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +  K RA     RTLIL PTRELA+QV +N  +YG+  +    ++ GG+    Q  KL
Sbjct: 61  QMLSTKPRANSNRTRTLILTPTRELASQVHENIIQYGRYLSFRSTVVFGGVKINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G ++L+ TPGR+LD +N+  +  + ++ LV+DEADRMLDMGFI  ++ I + +P  RQ
Sbjct: 121 RSGVEILVATPGRLLDLYNQRAIQFDQVDTLVLDEADRMLDMGFIHDMKRIINYLPKNRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT TDE++   +  L  P  I+V   ++T   I+                     
Sbjct: 181 NLMFSATFTDEIRSFVKTILNQPIEIDVTPRNTTVVKIKQTVHPVDKNRKAALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++     ++F   K     L   L +      AIHGN  Q  R K L++FK G + ++
Sbjct: 238 IHRNKWNQALVFSKTKHGANKLVKQLAEAQIHAAAIHGNKSQSQRTKALNDFKSGELHIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V NFD+P  AE+Y+HRIGRTGRAG  G A +LV+ +++  + +
Sbjct: 298 VATDIAARGIDIDQLPCVVNFDLPQVAEDYVHRIGRTGRAGAIGLAISLVSADEVNQLQS 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IEKLI+ K+D +  ++    P        QHN       +PQ +     RK +   +K+ 
Sbjct: 358 IEKLIQHKLDRI--EIEDFEP--------QHN-------VPQTTISSTTRKYSQIKKKTT 400

Query: 420 IPLKESEK 427
            P  +  K
Sbjct: 401 SPYAKPHK 408


>gi|167761792|ref|ZP_02433919.1| hypothetical protein BACSTE_00133 [Bacteroides stercoris ATCC
           43183]
 gi|167700298|gb|EDS16877.1| hypothetical protein BACSTE_00133 [Bacteroides stercoris ATCC
           43183]
          Length = 372

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 146/372 (39%), Positives = 224/372 (60%), Gaps = 3/372 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL ++  ++ A+ + GY  PTPIQ+K IP  L   D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFKDLNITEPILKAIEEKGYANPTPIQVKAIPAALTGKDILGCAQTGTGKTAAFAIPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  + R +  + LIL PTRELA Q+++  + Y K   +   ++ GG+   AQ   L 
Sbjct: 61  QHLQVLKNRDKSIKALILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRAQVNMLH 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+LD  N+G + ++N+   V+DEADRMLDMGFI  I+ +   +P  +QT
Sbjct: 121 KGVDILVATPGRLLDLMNQGYIHLDNVRHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM D +  ++ + L+ P +I   T +  + T++      Y    K+ + L   + 
Sbjct: 181 LFFSATMPDTIIALTNSLLKQPVKI---TITPKSSTVDTIEQTIYFVEKKEKSKLLISIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   ++ ++F   K N   +   L K G    AIHGN  Q +R   L NFK G I++M+
Sbjct: 238 HKTEGQSVLVFSRTKHNADRIVRVLSKAGIGSQAIHGNKSQNARQSALENFKTGKIRVMI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A T  ++E+ K ++ I
Sbjct: 298 ATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNLGTALTFCSQEERKLVNDI 357

Query: 361 EKLIEKKVDWLN 372
           +KL  KK+  + 
Sbjct: 358 QKLTGKKLSKVE 369


>gi|325273080|ref|ZP_08139385.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
 gi|324101781|gb|EGB99322.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
          Length = 630

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 172/462 (37%), Positives = 258/462 (55%), Gaps = 23/462 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+ 
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 60  ------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                     +  R   R PR L+L PTRELAAQV D+F+ Y ++  L  A + GG+   
Sbjct: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + +G DVL+  PGR+LD   +GK+ + ++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  +++  L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRAL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   LEK G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITLGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            +++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A ++VA ++
Sbjct: 298 NSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD--- 407
            K + +IE++  +++   D +  D S +     ++     N+ R       +  G     
Sbjct: 358 EKLLKSIERVTRQRIPDGDLMGFDASQVEAEKPEVRERPQNNGRGGRNQQARGEGGKDAN 417

Query: 408 -------RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADS 442
                  + K     Q +  P  + +   + QQ  +  D   
Sbjct: 418 GGRKDKGKDKGKAKQQTAEKPADKEKSGDRQQQPRKPRDKKP 459


>gi|15602977|ref|NP_246049.1| DeaD [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721456|gb|AAK03196.1| DeaD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 610

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 142/373 (38%), Positives = 221/373 (59%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL   ++ AV D G+  P+PIQ   IP +L  HDV G+AQTG+GKTA+F LP+L
Sbjct: 6   MTFNDLGLPEFLLNAVSDLGFETPSPIQQSCIPNLLNGHDVLGMAQTGSGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E + K    T  + +  G  ++ Q + L
Sbjct: 66  AQIDL---DKKYPQMLVMAPTRELAIQVADACEHFCKYAKNTNIVTLYGGQRYDIQLRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GA V++ TPGRILDH  RG L ++N+  +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 RQGAQVVVGTPGRILDHIRRGTLDLSNLRFMVLDEADEMLRMGFIDDVETVMAELPEQHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM D ++++++ F+++PK I++ +  +T   I       +              
Sbjct: 183 TALFSATMPDPIRRITKRFMKDPKEIKIKSTQTTNPDITQSCWYVHGFRKNDA---LLRF 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 240 LEVEKFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 300 VATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRTGRALLFVEPRERRLLRN 359

Query: 360 IEKLIEKKVDWLN 372
           IE+L +K +  + 
Sbjct: 360 IEQLTKKPITEVE 372


>gi|332304872|ref|YP_004432723.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172201|gb|AEE21455.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 576

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 150/381 (39%), Positives = 229/381 (60%), Gaps = 8/381 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L  +++ A+   GY KPTPIQ + IPL+++ HD+ G AQTGTGKTA+F LPML
Sbjct: 7   MTFKDLNLPAELLQALEKVGYEKPTPIQAQCIPLIMEGHDLLGTAQTGTGKTAAFALPML 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++   +  +    L+L PTRELA QVA+ F+ Y         L I  G  ++ Q ++L
Sbjct: 67  ANVDANNSNTQ---LLVLAPTRELAIQVAEAFQVYASFSRKLNVLPIYGGSSYDNQIRQL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA V++ TPGR++DH  +G L ++N++ LV+DEAD ML MGFI  ++ I S  P  RQ
Sbjct: 124 RRGAQVVVGTPGRVIDHIKKGTLKLDNLKFLVLDEADEMLRMGFIDDVEWILSHAPAERQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM D ++K+++ +L +PK++++ +  +TA TI+  +      +          +
Sbjct: 184 TALFSATMPDPIRKITKRYLSDPKQVKIESKVATASTIKQRYCQVAGHHK---LEALTRI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   + L   L  +G++V  ++G+I Q SR + +   K G I ++
Sbjct: 241 MEVEEFDAVIIFVRTKTATMELSEKLSARGYAVEPLNGDIPQNSRERTVERLKRGKIDIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+  V HV N+DVP   E+Y+HRIGRTGRAGR G A   ++  + + + +
Sbjct: 301 VATDVVARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAGRQGDAILFISHREKRMLFS 360

Query: 360 IEKLIEKKVDWLN-GDLSSLN 379
           IE+   + +D +    +S LN
Sbjct: 361 IERATRQSIDPMPIPSISQLN 381


>gi|297379472|gb|ADI34359.1| ATP-dependent RNA helicase [Helicobacter pylori v225d]
          Length = 492

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 141/392 (35%), Positives = 216/392 (55%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 81  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +   + T   I   F         +  +       
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL---D 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 254 TQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRVSIMAFKKNDADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ K++       + N  ++ +  A+ +  
Sbjct: 374 KEIDSKIELFEIPTINENQIIKTLHDAKVSEG 405


>gi|254883642|ref|ZP_05256352.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 4_3_47FAA]
 gi|294775629|ref|ZP_06741138.1| ATP-dependent RNA helicase RhlE [Bacteroides vulgatus PC510]
 gi|254836435|gb|EET16744.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 4_3_47FAA]
 gi|294450571|gb|EFG19062.1| ATP-dependent RNA helicase RhlE [Bacteroides vulgatus PC510]
          Length = 434

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 165/440 (37%), Positives = 254/440 (57%), Gaps = 15/440 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY  PTPIQ + IP++L+  D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   +    + LIL PTRELA Q+ +NF++Y     +  A++ GG+P +AQ   L+
Sbjct: 61  QRLYQSDHKKG-IKALILTPTRELAIQIGENFDQYAGYTGVKHAVIFGGVPQKAQVDALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  VLI TPGR+LD  ++G + +  +E  V+DEADRMLDMGFI  I+ +  L+P  RQT
Sbjct: 120 RGVQVLIATPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++++ L NP++IEV   SST +TI     + Y    K+   L   L 
Sbjct: 180 LFFSATMPSEIEKLADSMLTNPEKIEVTPVSSTVDTI---RQSVYFVEKKEKKDLLLHLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +++ +IF   K     L   L K      AIHGN  Q +R + L+NFK+ T ++++
Sbjct: 237 KNPEIESVLIFTRTKHGADKLARILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+++PN +E Y+HRIGRTGRAG  G A +    E++ ++  I
Sbjct: 297 ATDIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDI 356

Query: 361 EKLIEKKVDW--------LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           +KLI  ++          + G+ +      E  + A+ N   + +   + +  + RRKK 
Sbjct: 357 QKLIGLQIPVVKDHPWVTVEGEKAQAGKTEELKEKAKANKVYRGS---KSNGDYWRRKKQ 413

Query: 413 YSSQKSHIPLKESEKISKLQ 432
             S++         K S  Q
Sbjct: 414 AQSRQGQGRQSSDRKASGRQ 433


>gi|308061601|gb|ADO03489.1| ATP-dependent RNA helicase [Helicobacter pylori Cuz20]
          Length = 492

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 141/392 (35%), Positives = 216/392 (55%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 81  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +   + T   I   F         +  +       
Sbjct: 197 LFSATMPEPIKRLADRILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL---D 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 254 TQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ K++       + N  ++ +  A+ +  
Sbjct: 374 KEIDSKIELFEIPTINENQIIKTLHDAKVSEG 405


>gi|199598808|ref|ZP_03212220.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|229551599|ref|ZP_04440324.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus rhamnosus
           LMS2-1]
 gi|258509533|ref|YP_003172284.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
 gi|258540734|ref|YP_003175233.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
 gi|199590313|gb|EDY98407.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|229315064|gb|EEN81037.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus rhamnosus
           LMS2-1]
 gi|257149460|emb|CAR88433.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
 gi|257152410|emb|CAR91382.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
 gi|259650800|dbj|BAI42962.1| RNA helicase [Lactobacillus rhamnosus GG]
          Length = 502

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 143/368 (38%), Positives = 217/368 (58%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ A+  +G+ + TPIQ +TIPLVL+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFKELGLDHDLLKAIAQSGFEEATPIQAETIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++K    ++    L++ PTRELA Q  +   + G++  + V  + GG     Q ++L 
Sbjct: 61  QHIDKADRSIQ---ALVISPTRELAIQTQEELYRLGRDKKIKVQAVYGGADIRRQIRQLA 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILDH  R  L + +++ LV+DEAD MLDMGFI  I+ I   +P  RQT
Sbjct: 118 DHPQIVVGTPGRILDHIGRHTLKLEHLDTLVLDEADEMLDMGFIDDIEKIVEQMPTERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + +++  F++ P  +++     TA+T+E  +V                  
Sbjct: 178 LLFSATMPAAIMRLTNKFMKEPVIVKIKAKELTADTVEQYYVRAKDYEKFDVMTRL---F 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF   K+ V  L   L+ +G+    IHG++ Q+ RM +L  FK G +  +V
Sbjct: 235 DVQDPDLALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG  G + T V   +I+++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIEYLHTI 354

Query: 361 EKLIEKKV 368
           E L +K++
Sbjct: 355 EDLTKKRM 362


>gi|296103277|ref|YP_003613423.1| putative ATP-dependent RNA helicase RhlE [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295057736|gb|ADF62474.1| putative ATP-dependent RNA helicase RhlE [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 450

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 158/390 (40%), Positives = 238/390 (61%), Gaps = 6/390 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P+++ A+ + GYV+PTPIQ + IP VLQ  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPEILRAIAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y +  N+   ++ GG+    Q  
Sbjct: 61  ELLVKNQPHAKGRRPVRALILTPTRELAAQIGENVRDYSRYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++N+EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDNVEILVLDEADRMLDMGFIHDIRRVLAKLPPR 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  +EV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEVEVARRNTASEQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
             IE+L++K++  +      ++P ++   I
Sbjct: 358 RDIERLLKKEIPRIETPGYEVDPSIKAEPI 387


>gi|237707985|ref|ZP_04538466.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 9_1_42FAA]
 gi|229457971|gb|EEO63692.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 9_1_42FAA]
          Length = 434

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 165/437 (37%), Positives = 252/437 (57%), Gaps = 9/437 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY  PTPIQ + IP++L+  D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   +    + LIL PTRELA Q+ +NF++Y K   +  A++ GG+P +AQ   L+
Sbjct: 61  QRLYQSDYKKG-IKALILTPTRELAIQIGENFDQYAKYTGVKHAVIFGGVPQKAQVDALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  VLI TPGR+LD  ++G + +  +E  V+DEADRMLDMGFI  I+ +  L+P  RQT
Sbjct: 120 RGVQVLIATPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++++ L NPK++EV   SST +TI     + Y    K+   L   L 
Sbjct: 180 LFFSATMPSEIEKLADSMLTNPKKVEVTPVSSTVDTI---QQSVYFVEKKEKKDLLLHLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +++ +IF   K     L   L K      AIHGN  Q +R + L+NFK+ T ++++
Sbjct: 237 KNPEIESVLIFTRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+++PN +E Y+HRIGRTGRAG  G A +    E++ ++  I
Sbjct: 297 ATDIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDI 356

Query: 361 EKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHN-HARKNNPIPQKSTGFDRRKKNYSS 415
           +KLI  ++  +       +  +     K +  +    A K     + +  + RRKK   S
Sbjct: 357 QKLIGLQIPVVKDHPWVTVEGVKAQAGKTEELKEKAKANKAYRGSKSNGDYWRRKKQVQS 416

Query: 416 QKSHIPLKESEKISKLQ 432
           ++         K S  Q
Sbjct: 417 RQGQGRQSSDRKASGRQ 433


>gi|188527054|ref|YP_001909741.1| ATP-dependent RNA helicase [Helicobacter pylori Shi470]
 gi|188143294|gb|ACD47711.1| ATP-dependent RNA helicase [Helicobacter pylori Shi470]
 gi|308063109|gb|ADO04996.1| ATP-dependent RNA helicase [Helicobacter pylori Sat464]
          Length = 492

 Score =  180 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 141/392 (35%), Positives = 216/392 (55%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 81  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +   + T   I   F         +  +       
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL---D 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 254 TQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ K++       + N  ++ +  A+ +  
Sbjct: 374 KEIDSKIELFEIPTINENQIIKTLHDAKVSEG 405


>gi|113971464|ref|YP_735257.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113886148|gb|ABI40200.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 549

 Score =  180 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 185/484 (38%), Positives = 268/484 (55%), Gaps = 23/484 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV + GY  P+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   +V   R L+L PTRELAAQV+++ E YGK   L  A++ GG+P   Q +KL
Sbjct: 61  ELLSKGNKAKVGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR+LD   +  +  N +E+LV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 RHGVDVLVATPGRLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++++++  +  P  I V   ++ A T++               +     
Sbjct: 181 NLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  +  ++F   K     L  SL +   S  AIHGN  Q +R K L++FK G ++++
Sbjct: 238 IKQENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+ K +  
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLVSSEETKLLRD 357

Query: 360 IEKLIEKKVDWLNGD---------LSSLNP--PLEKID--IAQHNHARKNNPIPQKSTGF 406
           IE+LI + ++    +          S+LN      KI    +Q  H     P P+  TG 
Sbjct: 358 IERLINRVLERQEVEGFSPVHALPESTLNAHGKENKIKAVASQRKHRSAGKPSPRAGTGR 417

Query: 407 DRRKKNYSS-----QKSHIPLK-ESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
           D RK   SS     QK+  P + +     + ++     +A+      +  A   PK + K
Sbjct: 418 DGRKTPDSSDGAAQQKNSNPNQGQRNNQGQHKRPQAPKNAEHKNTHSSTEAGRTPKPQDK 477

Query: 461 LNDK 464
              +
Sbjct: 478 RPPR 481


>gi|149639807|ref|XP_001507068.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX27
           (DEAD box protein 27) [Ornithorhynchus anatinus]
          Length = 742

 Score =  180 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 157/464 (33%), Positives = 243/464 (52%), Gaps = 20/464 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ +   D+C  A TGTGKTA+F LP+L
Sbjct: 164 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGMLGKDICACAATGTGKTAAFALPVL 223

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++  +  N+T  L +GG+  + Q   L 
Sbjct: 224 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFSNVTTCLAVGGLDVKTQEAALR 283

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            G D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 284 AGPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIKMCSHHRQ 343

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   FV            +   L
Sbjct: 344 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAVVSAL 403

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 404 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDVL 463

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K +  
Sbjct: 464 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 523

Query: 360 IEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K  +                  K++ L  D+ ++     +    QH+ A+ N      
Sbjct: 524 IVKTAKAPVKARILPQDVILKFRDKIEKLEKDVYAVLRLEAEEKEMQHSEAQINTAKRLL 583

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFR 446
             G      N   ++S    +E  K  K+ + +QE D    G +
Sbjct: 584 EKGKGEA--NEEPRRSWFQSREERKKEKIAKALQEFDLALRGKK 625


>gi|122692565|ref|NP_001073740.1| probable ATP-dependent RNA helicase DDX27 [Bos taurus]
 gi|142980808|sp|A1A4H6|DDX27_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
           Full=DEAD box protein 27
 gi|119223998|gb|AAI26498.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Bos taurus]
 gi|296481114|gb|DAA23229.1| probable ATP-dependent RNA helicase DDX27 [Bos taurus]
          Length = 765

 Score =  180 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 156/465 (33%), Positives = 244/465 (52%), Gaps = 23/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 187 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 246

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++  +  ++T  L +GG+  ++Q   L 
Sbjct: 247 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALR 306

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 307 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 366

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 367 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 426

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 427 LMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 486

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K +  
Sbjct: 487 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 546

Query: 360 IEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K  +                  K++ +  D+ ++     +    Q + A+ N    Q+
Sbjct: 547 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQIN--TAQR 604

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
                +   N   ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 605 LLEKGKEAPNPEPERSWFQTKEERKKEKIAKALQEFD---LALRG 646


>gi|299140955|ref|ZP_07034093.1| ATP-dependent RNA helicase DeaD [Prevotella oris C735]
 gi|298577921|gb|EFI49789.1| ATP-dependent RNA helicase DeaD [Prevotella oris C735]
          Length = 542

 Score =  180 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 147/427 (34%), Positives = 243/427 (56%), Gaps = 19/427 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  + K TP+Q   IP +L+ +DV G+AQTGTGKTA+++LP+L
Sbjct: 1   MYFDELELNDNVLDALYDMRFEKCTPVQENCIPEILKGNDVLGVAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP----FEAQN 116
           + L+ G         LI+ PTRELA Q+    + +G   N   ++ + G      ++ + 
Sbjct: 61  SKLDDGGYPDNAINCLIMSPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQEL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P 
Sbjct: 121 KSLQLGADVVIATPGRLISHISLGNVDLSKVSFFILDEADRMLDMGFSDDIIKIAKKLPQ 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T QT++FSATM D+++ +++  L+NPK I++       +  +      Y  Y  +   + 
Sbjct: 181 TCQTIMFSATMPDKIEDLAKTLLKNPKVIKLAVSKPAEKIKQS----AYVCYETQKMGII 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + +     ++  IIFC  K  V  +  +L+++  +   +H ++DQ +R  ++  FK G  
Sbjct: 237 KDIFKNGDLERVIIFCGSKLKVKQVAGALQRKHINCGEMHSDLDQATRDDVMFKFKSGQF 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ ARG+DI D+  V N+DVP+ AE+Y+HRIGRT RA R G A T V+++DI +
Sbjct: 297 DVLVATDIVARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARAAREGSAITFVSEDDIYY 356

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              IEK +EK+V+           P+   D  ++  A K    P++ +    R+++   +
Sbjct: 357 FQQIEKFLEKEVEKTPL-------PVGLGDGPEYKSAGK----PKRGSSAKSRRRDNRDR 405

Query: 417 KSHIPLK 423
            SH   K
Sbjct: 406 TSHKDKK 412


>gi|218505708|ref|NP_001136206.1| predicted gene, EG668137 [Mus musculus]
          Length = 411

 Score =  180 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISVLQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     +GG       +KL+ 
Sbjct: 99  CLDI---QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACVGGTNVGEDIRKLDY 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 156 GQHVVAGTPGRVFDMIRRRSLTTRAIKMLVLDEADEMLNRGFKEQIYDVYRYLPPATQVV 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 216 LVSATLPHEILEMTNKFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFC  K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 274 TLTITQAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 334 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 393

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +L+ L
Sbjct: 394 QYYSTQIDEMPMNLADL 410


>gi|317181556|dbj|BAJ59340.1| ATP-dependent RNA helicase [Helicobacter pylori F57]
          Length = 492

 Score =  180 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 141/392 (35%), Positives = 216/392 (55%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 81  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +   + T   I   F         +  +       
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL---D 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 254 TQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ K++       + N  ++ +  A+ +  
Sbjct: 374 KEIDSKIELFEIPTINENQIIKTLHNAKVSEG 405


>gi|257870943|ref|ZP_05650596.1| helicase [Enterococcus gallinarum EG2]
 gi|257805107|gb|EEV33929.1| helicase [Enterococcus gallinarum EG2]
          Length = 502

 Score =  180 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 154/384 (40%), Positives = 229/384 (59%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS +++ +V  AG+ + TPIQ  TIPL LQ  DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKDLELSNELLTSVERAGFEEATPIQEATIPLALQGRDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++    +++    L++ PTRELA Q  +   + GK+  + V  + GG     Q ++L+
Sbjct: 61  EKIDPANHQLQ---GLVIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIRQLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  +E LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F++NP+ +++     TA+ I+  +V +                
Sbjct: 178 LLFSATMPPAIKSIGVKFMKNPEHVQIKAKEMTADLIDQYYVRSKDYEKFDIMTRLL--- 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGISVTFVTPNEMSYLHVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       +S + PP EK
Sbjct: 355 ENLTKKR-------MSPMRPPTEK 371


>gi|116617572|ref|YP_817943.1| superfamily II DNA/RNA helicase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096419|gb|ABJ61570.1| Superfamily II DNA and RNA helicase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 528

 Score =  180 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 149/373 (39%), Positives = 223/373 (59%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+   GYV+ TPIQ KTIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGRDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    LI+ PTRELA Q A+  +K G++  + V ++ GG     Q + L+
Sbjct: 61  EHIDLNNKNIQ---ALIVSPTRELAIQTAEELKKLGRDKRVDVQVVFGGADIRRQIQNLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LDH NR  + ++N+  LV+DEAD ML+MGF+  I+ I S  P  RQT
Sbjct: 118 SHPQILVGTPGRLLDHINRKTVKIDNVRTLVLDEADEMLNMGFLDDIEAIISKTPAERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+ NP+ I++     T + +             +       + 
Sbjct: 178 LLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLV---DQYFVRMRENEKFDTMTRIF 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  I+F   K+ V  L   LE +G+    +HG++ Q+ R ++L+ FK   I ++V
Sbjct: 235 DVQAPKLAIVFGRTKRRVEELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HV+NFD+P   E+Y+HRIGRTGRAG  G + T VA  ++ ++ A+
Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTFVAPNEMDYLRAV 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 EDLTKKRMTPLEP 367


>gi|33598065|ref|NP_885708.1| putative ATP-dependent RNA helicase [Bordetella parapertussis
           12822]
 gi|33566623|emb|CAE38832.1| putative ATP-dependent RNA helicase [Bordetella parapertussis]
          Length = 477

 Score =  180 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 163/432 (37%), Positives = 249/432 (57%), Gaps = 18/432 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD GL P ++ ++ D GY  PTPIQ + IP+V++  DV G AQTGTGKTA+F LP+L 
Sbjct: 18  TFADFGLHPLLLKSIADTGYTNPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILH 77

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QV ++ ++Y  +  L  A++ GG+    Q 
Sbjct: 78  RLMPLANTSASPARHPVRALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQK 137

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +VL+ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF+P ++ I  L+P 
Sbjct: 138 EALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPA 197

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT ++E++K+  ++L +P  IEV   ++TA+T+       +    +   +  
Sbjct: 198 QRQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATADTVTQIAYQMHGDTKRAAVVHL 257

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                   +K  I+F N K     L   LE+ G    +IHG+  Q  RMK L  FK G +
Sbjct: 258 ---VKSRGLKQVIVFSNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKAGDL 314

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLD+  V  V N+D+P  AE+Y+HRIGRTGRAG  G+A  L   ++ ++
Sbjct: 315 EVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEERY 374

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  IEKLI+++V     +L +        D+   +H R  +   ++  G DR +    + 
Sbjct: 375 LLDIEKLIKRQVPRGKLELPA--------DLVARSHGRDRDAPRER--GADRHRGERRTS 424

Query: 417 KSHIPLKESEKI 428
            +  P +  +++
Sbjct: 425 GAAAPRQPVDEL 436


>gi|237831253|ref|XP_002364924.1| ATP-dependent helicase, putative [Toxoplasma gondii ME49]
 gi|211962588|gb|EEA97783.1| ATP-dependent helicase, putative [Toxoplasma gondii ME49]
 gi|221487231|gb|EEE25477.1| ATP-dependent helicase, putative [Toxoplasma gondii GT1]
 gi|221506914|gb|EEE32531.1| ATP-dependent helicase, putative [Toxoplasma gondii VEG]
          Length = 395

 Score =  180 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 200/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G    ++  +   G+ +P+ +Q + I  +++  DV   +Q+GTGKT  F L    
Sbjct: 23  TFDAMGFKEDLLRGIYAYGFERPSAVQQRAIVPIMKGRDVIVQSQSGTGKTCVFCL---G 79

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR P+ LIL PTRELA Q        G   ++ V   IGG       + LE 
Sbjct: 80  CLQCIDPKVRDPQALILSPTRELAEQSQKVCLALGDYMSVQVHCCIGGKRVGDDIRALEA 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+     +      +I++LV+DEAD ML+ GF   + +I   +P + Q +
Sbjct: 140 GVHIVSGTPGRVFHMIAQRHFSTRHIKLLVLDEADEMLNRGFKEQVYDIYRYLPPSTQVV 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P R+ V     T E I+  FVA   +  K        L  
Sbjct: 200 LVSATLPHEVLEMTTKFMDDPFRVLVKRDELTLEGIKQFFVAVEREQWKFDT--LTDLYD 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K  V  L   +++  F+V  +HG++ Q+ R +I+  F+ G  ++++A
Sbjct: 258 TLTITQAVIFCNTKAKVEWLAQKMKEANFTVSRMHGDMPQQERDEIMRQFRGGQSRVLIA 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+  RGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 318 TDVWGRGLDVQQVSLVINYDLPNSRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRDIE 377

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 378 QYYATQIDEMPMNVADL 394


>gi|313123075|ref|YP_004033334.1| dead box ATP-dependent RNA helicase srmb [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312279638|gb|ADQ60357.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 481

 Score =  180 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 148/388 (38%), Positives = 229/388 (59%), Gaps = 11/388 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+  ++ A+  +G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFTELGLNDNILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  +   +  + +++EPTRELA Q  +   + G++ N  V ++ GG     Q + L+
Sbjct: 61  QKLDLDKQE-QAIQAIVIEPTRELAIQTQEELFRLGRDENAKVQVVYGGADIGRQIRALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  ++L+ TPGR+LDH  R  + ++ ++ +V+DEAD MLDMGFI  I++I +      QT
Sbjct: 120 KAPEILVGTPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +Q + E F+ +P+ +++     TA+ I+  FV                  
Sbjct: 180 LLFSATMPKPIQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRL---I 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     ++F   K+ V  L   L  +G++   IHG++ Q  RM++L  FKEG + ++V
Sbjct: 237 DVENPDLAVVFGRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG+ G + T V   +I ++  I
Sbjct: 297 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGMSVTFVTPNEIGYMRTI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           E LI+KK       +S L PP +    A
Sbjct: 357 EDLIKKK-------MSPLRPPTDAQAFA 377


>gi|73992239|ref|XP_867139.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX27
           (DEAD-box protein 27) isoform 2 [Canis familiaris]
          Length = 763

 Score =  180 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 142/464 (30%), Positives = 226/464 (48%), Gaps = 21/464 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 185 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 244

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++   +     +     +  +    +  
Sbjct: 245 ERLIYKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAHHLAGLFSAGGLDVKSQEAALRAA 304

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +       I    N     +++IE+L++DEADRMLD  F   ++ I  +    RQT
Sbjct: 305 PDILI-ATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 363

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTDE++ ++   L+NP RI VN+ +  A  +   FV            +   L 
Sbjct: 364 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALL 423

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++V
Sbjct: 424 TRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 483

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K +  I
Sbjct: 484 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 543

Query: 361 EKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
            K  +                  K++ +  D+ ++     +    Q + A+ N       
Sbjct: 544 VKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQQSEAQINTAKRLLE 603

Query: 404 TGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
               +   N+  ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 604 REKGKEASNHEPERSWFQTKEERKKEKIAKALQEFD---LALRG 644


>gi|150391484|ref|YP_001321533.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951346|gb|ABR49874.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 484

 Score =  180 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 132/400 (33%), Positives = 225/400 (56%), Gaps = 12/400 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D  LS +++ ++    +  PT +Q + IP +L+  D+   +QTG+GKTA+F +P+  
Sbjct: 5   NFSDYQLSDELLKSISMLNFESPTKVQQQVIPAILEHKDIIVKSQTGSGKTAAFAIPICQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    +   P+ L+L PTRELA QV ++    G+   L VA + G  PF  Q K+L++
Sbjct: 65  LVDWDENK---PQALVLVPTRELAIQVKEDMFNIGRFKRLKVAAVYGKAPFYHQEKELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGRI+DH  +G    + I+ LVIDEAD M +MGF+  I+ I   +   R T+
Sbjct: 122 KTHVVVGTPGRIIDHMEKGTFDTSQIKYLVIDEADEMFNMGFVDQIETIIKDLSKKRVTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM   ++ +S  ++++P   E+   SS  + I            +    L   +  
Sbjct: 182 LLSATMPSAIETLSNRYMKDPIHAEIEEESSAVDRISQERYTVEY---RDKMKLLSDITI 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFCN K+ V  +   L +  ++   IHG ++QR R+++++ FK+G  + +VA
Sbjct: 239 VENPDSCIIFCNTKQRVDEVNDELIRLNYTCEKIHGGMEQRDRVRVMNEFKQGYFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++  V N+D+P   E+Y+HRIGRTGR  R G+A T V + + K +  I 
Sbjct: 299 TDVAARGIDIDNISLVINYDIPQDKESYVHRIGRTGRISREGRAITFVTQYEDKFLKDIH 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           + I K++  +        P +E ++ ++     K N  P+
Sbjct: 359 RYIGKEIPLMQ------RPEIETVNDSKEEFVEKINTKPE 392


>gi|94309401|ref|YP_582611.1| DEAD/DEAH box helicase-like protein [Cupriavidus metallidurans
           CH34]
 gi|93353253|gb|ABF07342.1| RNA helicase [Cupriavidus metallidurans CH34]
          Length = 540

 Score =  180 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 171/459 (37%), Positives = 257/459 (55%), Gaps = 18/459 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY  PTPIQ + IP +L+  D+   AQTGTGKTA F LPML
Sbjct: 1   MSFSELGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRARVRMPRTL----------ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
            +L +  AR                 +L PTRELAAQV ++   YGK   L   ++ GG+
Sbjct: 61  QLLSETAARANGGNAPRGARPNVRALVLTPTRELAAQVEESVRNYGKYLKLRSMVMFGGV 120

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q + L RG D+++ TPGR+LDH  +  + ++++E+LV+DEADRMLDMGFI  I+ +
Sbjct: 121 GINPQIEALRRGVDIVVATPGRLLDHVAQRTIDLSHVELLVLDEADRMLDMGFIHDIRKV 180

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +++P  RQ LLFSAT +D+++ +++  L NP  IEV   ++TAET+         +  +
Sbjct: 181 LNVLPPKRQNLLFSATFSDDIRALADRLLDNPASIEVARRNTTAETVAQRVFPVDRERKR 240

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +       L  Q      ++F   K     L   L K G S  AIHGN  Q +R + L+ 
Sbjct: 241 EL---LAHLVRQHDWHQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALTE 297

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK GT++L+VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV 
Sbjct: 298 FKAGTLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVC 357

Query: 351 KEDIKHIDAIEKLIEKKVDW-----LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            ++   +  IE+LI+++++         D S    P++K    Q     + N       G
Sbjct: 358 VDEHGLLRDIERLIKRQIEQVLLPGFEVDPSIKAEPIQKGRQQQRGGQPRGNGQGNAGNG 417

Query: 406 FDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLG 444
            +RR+   +  +     ++       + + +  +A   G
Sbjct: 418 GERRQPRAAQGERQEAPRQPRPAQPARGEARNGNAGGSG 456


>gi|315586245|gb|ADU40626.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 35A]
          Length = 492

 Score =  180 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 142/392 (36%), Positives = 217/392 (55%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 81  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +   + T   I   F         K  +       
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAKAIMRLL---D 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 254 TQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ +++       + N  ++ +  A+ + A
Sbjct: 374 KEIDSEIELFEIPTINENQIIKTLHDARVSEA 405


>gi|328956669|ref|YP_004374055.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4]
 gi|328672993|gb|AEB29039.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4]
          Length = 533

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 145/371 (39%), Positives = 220/371 (59%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGL+P+++ +V   G+ + TPIQ +TIPL L+  DV G AQTGTGKTA+F LPML
Sbjct: 6   LKFTELGLAPELLKSVERLGFEEATPIQAQTIPLALEGKDVIGQAQTGTGKTAAFGLPML 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    L++ PTRELA Q  +   +  ++  + V ++ GG     Q + L+
Sbjct: 66  QKIDVNNRNVQ---GLVIAPTRELAIQTQEELFRLSRDKKIRVQVVYGGADISRQIRALK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  L + ++E LV+DEAD ML+MGFI  I+ I   VP  RQT
Sbjct: 123 DAPHIVVGTPGRLLDHIKRKTLKLGHVETLVLDEADEMLNMGFIDDIETIIHEVPAERQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+ NP+ +++   + +   IE  FV                  
Sbjct: 183 LLFSATMPPAIKRIGVRFMSNPEHVQIKATTMSDSLIEQFFVRCKDFEKFDIMTRL---F 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  IIF   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 240 DVQTPELTIIFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLKSFKTGKLDILV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T +   ++ ++  I
Sbjct: 300 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGVSVTFITPNEMGYLRVI 359

Query: 361 EKLIEKKVDWL 371
           E L +K +  L
Sbjct: 360 EDLTKKTMTPL 370


>gi|237725257|ref|ZP_04555738.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. D4]
 gi|229436523|gb|EEO46600.1| ATP-dependent RNA helicase DeaD [Bacteroides dorei 5_1_36/D4]
          Length = 434

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 165/437 (37%), Positives = 252/437 (57%), Gaps = 9/437 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY  PTPIQ + IP++L+  D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   +    + LIL PTRELA Q+ +NF++Y K   +  A++ GG+P +AQ   L+
Sbjct: 61  QRLYQSDHKKG-IKALILTPTRELAIQIGENFDQYAKYAGVKHAVIFGGVPQKAQVDALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  VLI TPGR+LD  ++G + +  +E  V+DEADRMLDMGFI  I+ +  L+P  RQT
Sbjct: 120 RGVQVLIATPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++++ L NPK++EV   SST +TI     + Y    K+   L   L 
Sbjct: 180 LFFSATMPSEIEKLADSMLTNPKKVEVTPVSSTVDTI---QQSVYFVEKKEKKDLLLHLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +++ +IF   K     L   L K      AIHGN  Q +R + L+NFK+ T ++++
Sbjct: 237 KNPEIESVLIFTRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+++PN +E Y+HRIGRTGRAG  G A +    E++ ++  I
Sbjct: 297 ATDIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDI 356

Query: 361 EKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHN-HARKNNPIPQKSTGFDRRKKNYSS 415
           +KLI  ++  +       +  +     K +  +    A K     + +  + RRKK   S
Sbjct: 357 QKLIGLQIPVVKDHPWVTVEGVKAQAGKTEELKEKAKANKAYRGSKGNGDYWRRKKQVQS 416

Query: 416 QKSHIPLKESEKISKLQ 432
           ++         K S  Q
Sbjct: 417 RQGQGRQSSDRKASGRQ 433


>gi|156405006|ref|XP_001640523.1| predicted protein [Nematostella vectensis]
 gi|156227658|gb|EDO48460.1| predicted protein [Nematostella vectensis]
          Length = 407

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 128/377 (33%), Positives = 208/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+ KP+ IQ + I  +L+  DV   AQ+GTGKTA+F + +L 
Sbjct: 35  TFDAMKLREDLLRGIYAYGFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQ 94

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    ++R P+ L+L PTRELA Q+       G   ++     IGG       +KL+ 
Sbjct: 95  AIDT---QLREPQALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDY 151

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L   +I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 152 GQHIVSGTPGRVFDMIRRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 211

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 212 LLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 269

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+ +F+ G  +++++
Sbjct: 270 TLTITQAVIFCNTKRKVDWLTEKMREANFTVASMHGDMPQKEREAIMKDFRAGQSRVLIS 329

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 330 TDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIE 389

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 390 QYYSTQIDEMPMNVADL 406


>gi|15230945|ref|NP_188610.1| eukaryotic translation initiation factor 4A, putative / eIF-4A,
           putative / DEAD box RNA helicase, putative [Arabidopsis
           thaliana]
 gi|109893655|sp|Q94A52|RH2_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 2
 gi|332642762|gb|AEE76283.1| DEAD-box ATP-dependent RNA helicase 2 [Arabidopsis thaliana]
          Length = 408

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 201/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+G+   V+  V + G+ KP+ IQ + +  +LQ  DV   AQ+GTGKT+   L +  
Sbjct: 36  SFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQ 95

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     V+    LIL PTRELA Q     +  G + N+     IGG       +KLE 
Sbjct: 96  VVDTSSREVQA---LILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEH 152

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++L++DE+D ML  GF   I ++   +P   Q  
Sbjct: 153 GVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVC 212

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+  P +I V     T E I+  FVA   +  K   L       
Sbjct: 213 LVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL--YD 270

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   +    F+V ++HG++ Q+ R  I++ F+ G  ++++ 
Sbjct: 271 TLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLIT 330

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +  IE
Sbjct: 331 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIE 390

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 391 QYYSTQIDEMPMNVADL 407


>gi|3775985|emb|CAA09195.1| RNA helicase [Arabidopsis thaliana]
 gi|9294443|dbj|BAB02563.1| RNA helicase [Arabidopsis thaliana]
          Length = 391

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 201/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+G+   V+  V + G+ KP+ IQ + +  +LQ  DV   AQ+GTGKT+   L +  
Sbjct: 19  SFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQ 78

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     V+    LIL PTRELA Q     +  G + N+     IGG       +KLE 
Sbjct: 79  VVDTSSREVQA---LILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEH 135

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++L++DE+D ML  GF   I ++   +P   Q  
Sbjct: 136 GVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVC 195

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+  P +I V     T E I+  FVA   +  K   L       
Sbjct: 196 LVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL--YD 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   +    F+V ++HG++ Q+ R  I++ F+ G  ++++ 
Sbjct: 254 TLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLIT 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +  IE
Sbjct: 314 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIE 373

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 374 QYYSTQIDEMPMNVADL 390


>gi|261839104|gb|ACX98869.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori 52]
          Length = 492

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 141/392 (35%), Positives = 217/392 (55%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 81  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +   + T   I   F         +  +       
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSNITNADITQRFYVINEHERAEAIMRLL---D 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 254 TQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRTSIMAFKKNDADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ +++       + N  ++ +  A+ + A
Sbjct: 374 KEIDSEIELFEIPTINENQIIKTLHDAKVSEA 405


>gi|332994521|gb|AEF04576.1| ATP-dependent RNA helicase [Alteromonas sp. SN2]
          Length = 588

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 145/373 (38%), Positives = 226/373 (60%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   ++ A+   GY KP+PIQ ++IPL+L+ HD+ G AQTGTGKTA+F LPML
Sbjct: 7   MTFKDLKLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPML 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++  + +   P+ L+L PTRELA QVA+ F+ Y    +    L +  G  ++ Q ++L
Sbjct: 67  ANIDPEQRK---PQLLVLAPTRELAIQVAEAFQVYASFSHKIKVLPVYGGQSYDNQIRQL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGR++DH  R  L ++ ++ LV+DEAD ML MGFI  ++ I S  P  RQ
Sbjct: 124 KRGVQVVVGTPGRVIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPAERQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM   ++K+++ +L++PK +++ +  STA TI   +      +          +
Sbjct: 184 TALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQVAPHHK---LEALTRI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   V L   L  +G+ V  ++G+I Q +R + +   K+G I ++
Sbjct: 241 MEVERFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQNARERTVDKLKQGNIDIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+  V HV N+DVP  +E+Y+HRIGRTGRAGR G A   ++  + + + +
Sbjct: 301 VATDVVARGLDVERVSHVINYDVPYDSESYVHRIGRTGRAGRTGDAILFISHREKRMLFS 360

Query: 360 IEKLIEKKVDWLN 372
           IEK  ++ ++ + 
Sbjct: 361 IEKTTKQPIEVMP 373


>gi|24216134|ref|NP_713615.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str.
           56601]
 gi|45656634|ref|YP_000720.1| ATP-dependent RNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24197378|gb|AAN50633.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str.
           56601]
 gi|45599869|gb|AAS69357.1| ATP-dependent RNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 540

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 152/453 (33%), Positives = 252/453 (55%), Gaps = 21/453 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L + PK++ A+ + GY + TPIQ K+IP  L+  D+ G+AQTGTGKT +F++P++
Sbjct: 1   MKFEELSIHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             +      ++    L+L PTREL  Q+A+  +K  K+   +    +IGG  +++QNK L
Sbjct: 61  HNILTKG--IQGIAALVLAPTRELTMQIAEEAKKLLKHSEGIRSVPIIGGTDYKSQNKDL 118

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E    +++ TPGR++D    G + ++N+E  V+DEADRMLDMGFI  I+ +       +Q
Sbjct: 119 EGLNGIIVATPGRLIDMIKSGSIDISNVEFFVLDEADRMLDMGFIQDIRWLLHKCKNRKQ 178

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLL+SAT++ E+ +++  FL  P  I++N      E         +    +K   +  L+
Sbjct: 179 TLLYSATLSVEVMRLAYRFLNEPVEIQINPEKIITER--IDQKIVHLGREEKIPYMTNLI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +      GIIF N K N+  + ++L K G  V  I   +DQ+ R+++L +FK G  + M
Sbjct: 237 INSKEEGQGIIFTNYKANIPKIVYTLRKYGVPVTGISSELDQKKRLRLLRDFKSGKYRYM 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RG+D+ ++  V+N+D+P   ENY+HRIGRT RAGR GKA    ++ D   ++ 
Sbjct: 297 VATDVASRGIDVENIDIVYNYDLPQDTENYVHRIGRTARAGRKGKAIGFCSESDYVELEK 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPL---------EKIDIAQHNHARKNNPIPQKS------T 404
           IEK +++K++ L  +   +  P          +  D  +  H ++N   P  +       
Sbjct: 357 IEKYLKQKIEILEVNEEYIQFPAGDFQSFIGGDSYDREKETHFKQNGKRPHDNDRAPHKH 416

Query: 405 GFDRRKKNYSSQKSHIPLKESEKISKLQQDIQE 437
             +R++    +  +H   K+S K  K    IQE
Sbjct: 417 DRNRKRDKRHTSHTHSTAKDSHK-KKPAAAIQE 448


>gi|70733086|ref|YP_262859.1| DEAD-box ATP dependent DNA helicase [Pseudomonas fluorescens Pf-5]
 gi|68347385|gb|AAY94991.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           fluorescens Pf-5]
          Length = 622

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 176/494 (35%), Positives = 267/494 (54%), Gaps = 40/494 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+ 
Sbjct: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 60  ------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                     +  R   R PR L+L PTRELAAQV D+F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRAL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   L+K G S  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPP----LEKIDIAQHNHAR------------ 394
            K + +IE++ ++K+   D +  D S++        E+ D+    + R            
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDASAVEAEKPEVRERPDVRNPRNPRGPRGDGPNGGGG 417

Query: 395 -----------KNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSL 443
                           P +     R +K      +    + + +  +   +  ++D D+ 
Sbjct: 418 GGGRKDKGKDKGGKEKPARGERPAREQKPREGTPAREQRQPTPRADRAPDEFLDDDVDNF 477

Query: 444 GFRGNMPAFMLPKN 457
           G R +  +    KN
Sbjct: 478 GNRADYVSPYQNKN 491


>gi|322379432|ref|ZP_08053802.1| ATP-dependent RNA helicase, DEAD-box family [Helicobacter suis HS1]
 gi|322380957|ref|ZP_08055023.1| ATP-dependent DEAD box-containing RNA helicase [Helicobacter suis
           HS5]
 gi|321146629|gb|EFX41463.1| ATP-dependent DEAD box-containing RNA helicase [Helicobacter suis
           HS5]
 gi|321148141|gb|EFX42671.1| ATP-dependent RNA helicase, DEAD-box family [Helicobacter suis HS1]
          Length = 471

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 144/389 (37%), Positives = 215/389 (55%), Gaps = 10/389 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL  K++ ++ DAG+  P+PIQ K IP++L+  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFKDLGLHSKILKSIADAGFTGPSPIQEKAIPVILEGKDVIAQAQTGTGKTAAFALPIIQ 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+      +    LI+ PTRELA Q++D   K GK+       + GG   + Q   LER
Sbjct: 81  NLQND----KSIEALIITPTRELAMQISDEIFKLGKSSRTRTICVYGGQSIKKQCDLLER 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    +L      ++V+DE+D MLDMGF+  I+ I + +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNKRLKRFAPRVVVLDESDEMLDMGFLDDIEEIFNYLPEDAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++ ++   LQ+P  I +     T   I   F         +  +     ++
Sbjct: 197 LFSATMPAPIKDLANKILQDPVSIHIAPTHVTNADISQRFYVINEHERNEAIMRLLDKEN 256

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIF   K+ V  L   L  +G+    +HG+++QR+R + +  FK     ++VA
Sbjct: 257 H---SKSIIFMRMKREVDELHQFLSAKGYKTTPLHGDMEQRARRESIKAFKSKLADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI DV HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDISDVSHVFNYHLPLNTESYIHRIGRTGRAGKKGVAITLVTPLEYKELQRMQ 373

Query: 362 KLIEKKVDWL---NGDLSSLNPPLEKIDI 387
           K I   ++     N +   L   + K+++
Sbjct: 374 KDIGSSIELYEIPNMNEDRLIQAISKVEV 402


>gi|313112968|ref|ZP_07798612.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624733|gb|EFQ08044.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 638

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 161/434 (37%), Positives = 241/434 (55%), Gaps = 3/434 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ AV +AGY  P+PIQ   IP VL   D+ G AQTGTGKTA+F LPML
Sbjct: 1   MTFKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLSGRDLMGCAQTGTGKTAAFALPML 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                    R    R LIL PTRELA Q+ ++F+ YGK   L   ++ GG+    Q + L
Sbjct: 61  DRLTANAPRRKGAIRALILTPTRELALQIGESFDAYGKYLKLRSTVIFGGVGQAPQVEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G D+LI  PGR+ D   +G + ++N+EI V+DEADRMLDMGF+  ++ + + +P  RQ
Sbjct: 121 KKGVDILIACPGRLNDLIGQGFIDLSNLEIFVLDEADRMLDMGFVHDVKKVIAKLPGERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  E+++++   L+ P  ++V+  SST + I+           K       + 
Sbjct: 181 NLMFSATMPTEIEQLAAGILRKPAFVKVDPVSSTVDRIQQSLYHVEKGNKKFLLPWL-IK 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  + N ++F   K     +   L KQG    AIHGN  Q +R+  L NFK G  +++
Sbjct: 240 NLQPPVVNALVFSRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALENFKAGKTKVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI ++ HVFN+D+P   E Y+HRIGRT RAG  G A +  A E+ +++  
Sbjct: 300 VATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEQEYLAG 359

Query: 360 IEKLIEKKVDWLNG-DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           IEKL   K+  ++G     +  P+      +    +     P +     + K   +  K+
Sbjct: 360 IEKLNRGKIPVVSGHPWDGVPAPVRPEPPVRGKKPKAAAAEPAEKPAAKQPKPAKAEAKN 419

Query: 419 HIPLKESEKISKLQ 432
             P K++    K+Q
Sbjct: 420 AKPEKKAAPAPKVQ 433


>gi|134093720|ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
 gi|133737623|emb|CAL60666.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
          Length = 502

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 167/439 (38%), Positives = 246/439 (56%), Gaps = 15/439 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL+P+++ A+ D GYV PTPIQ + IP+VL+  DV G AQTGTGKTA F LP++ +
Sbjct: 25  FQDFGLAPEILKALNDQGYVHPTPIQAEAIPVVLKGMDVMGAAQTGTGKTAGFSLPIIQL 84

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L         P        IL PTRELA QVA N + Y ++  L   ++ GG+    Q  
Sbjct: 85  LMAHANSSASPARHPVRALILTPTRELADQVAANVKAYSRHTPLRSLVVFGGMDMTPQTA 144

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G +++I TPGR+LDH  +  + ++  +ILV+DEADRMLDMGF+P +Q I +L+P  
Sbjct: 145 ALRGGVEIVIATPGRLLDHVQQKTINLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQ 204

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ L+FSAT + E++K++  FL++P  IEV   ++TAE +         +  +       
Sbjct: 205 RQNLMFSATFSPEIKKLAATFLKDPVTIEVARSNATAENVTQIIYKVEEEAKRDAVSFI- 263

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               +  +K  I+F N K     L   LE +G    AIHG+  Q  RM+ L  FK GTI+
Sbjct: 264 --IRERGLKQVIVFSNTKIGASRLARQLESEGVKASAIHGDKSQSERMQALEQFKNGTIE 321

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L + +D + +
Sbjct: 322 VLVATDVAARGLDIAELPCVINFDLPYNAEDYVHRIGRTGRAGASGDAISLFSDKDARLL 381

Query: 358 DAIEKLIEKKVDWLNGDLSSLNP-----PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             IEK+I+ K  ++  +L    P          D   H  + + +    + +    R   
Sbjct: 382 VDIEKMIKHK--FVPAELIGFTPSSGRTAERSHDRRAHERSPRKDESAPRPSRAPERSPG 439

Query: 413 YSSQKSHIPLKESEKISKL 431
            +S  S      + +  K+
Sbjct: 440 AASNGSRSAYAAAPRKEKI 458


>gi|51712358|ref|XP_485792.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus]
 gi|82902181|ref|XP_918907.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus]
          Length = 411

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 132/377 (35%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + ML 
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISMLQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG   +   +KL+ 
Sbjct: 99  CLDI---QVRETQALILAPTRELAVQIQKGLLTLGDYMNVQCHACIGGTNVDEDIRKLDY 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P  I V     T E I+  FVA   +  K   L       
Sbjct: 216 LISATLPHEILEMTNKFMTDPICILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HGN+ Q+ R  I+  F+ G  +++++
Sbjct: 274 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGNMPQKERESIMKEFRSGASRVLIS 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 334 TDIWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 393

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 394 QYYSTQIDEMPMNVADL 410


>gi|149184420|ref|ZP_01862738.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
 gi|148831740|gb|EDL50173.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
          Length = 359

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 194/347 (55%), Positives = 247/347 (71%), Gaps = 3/347 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS  ++ AV +AGY +PTPIQ + IP +L   D+ GIAQTGTGKTASFVLPM+
Sbjct: 1   MSFADLGLSEDLLKAVEEAGYTEPTPIQAQAIPPILMMKDIIGIAQTGTGKTASFVLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ++  GR R  MPR+LIL PTRELAAQVA+NFEKYGKN++L +ALLIGG+    Q K L 
Sbjct: 61  DVMASGRRRALMPRSLILAPTRELAAQVAENFEKYGKNHDLKLALLIGGVQMGDQIKALN 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR++D F RGK+L+N  E+LVIDEADRMLDMGFIP I+ I S +P  RQT
Sbjct: 121 EGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIEFICSKLPEQRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++K+++ FL NPKRIEV+  ++T + I           S+K     + L 
Sbjct: 181 MLFSATMPPPIEKLAKKFLDNPKRIEVSRAATTNKDI---TAFKIPVESRKKRETLRWLL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D ++  IIF N+K  V  L  SL++ GF+   IHG++DQ SR+K L  FK G + ++V
Sbjct: 238 RNDHVETAIIFANRKTTVRELNKSLQQHGFASSEIHGDMDQSSRIKELDRFKNGEVNILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           ASD+AARGLD+  V HVFNFD P   ++Y+HRIGRTGRAG  G+AFT
Sbjct: 298 ASDVAARGLDVKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFT 344


>gi|109947876|ref|YP_665104.1| ATP-dependent RNA helicase [Helicobacter acinonychis str. Sheeba]
 gi|109715097|emb|CAK00105.1| ATP-dependent RNA helicase [Helicobacter acinonychis str. Sheeba]
          Length = 494

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 140/392 (35%), Positives = 216/392 (55%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 23  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 83  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTKTKTVCVYGGQSVKKQCEFIKK 138

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 139 NPQVMIATPGRLLDHLKNDRIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 198

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++K+++  L+NP +I +   + T   I   F         +  +       
Sbjct: 199 LFSATMPEPIKKLADKILENPIKIHIAPSNITNTDITQRFYVINEHERSEAIMHLL---D 255

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 256 TQAPEKSIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVA 315

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 316 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 375

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ +++       + N  ++ +  A+ +  
Sbjct: 376 KEIDSEIELFEIPTINENQIIKTLHGAKVSEG 407


>gi|117919262|ref|YP_868454.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117611594|gb|ABK47048.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 578

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 173/450 (38%), Positives = 254/450 (56%), Gaps = 18/450 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV + GY  P+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   +    R L+L PTRELAAQV+++ E YGK   L  A++ GG+P   Q +KL
Sbjct: 61  ELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR+LD   +  +  N +E+LV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 RHGVDVLVATPGRLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++++++  +  P  I V   ++ A T++               +     
Sbjct: 181 NLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  +  ++F   K     L  SL +   S  AIHGN  Q +R K L++FK G ++++
Sbjct: 238 IKQEDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+ K +  
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLVSSEETKLLRD 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+LI + ++    +  S   P+  +  +  N   K N I           K  +SQ+ H
Sbjct: 358 IERLINRVLERQEVEGFS---PVHTLPESTLNAHGKENKI-----------KAVASQRKH 403

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNM 449
               +    +   +D ++  A      G++
Sbjct: 404 RSAGKPAPRAGSGRDGRKTPAPKTADNGDL 433


>gi|301754403|ref|XP_002913034.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
           [Ailuropoda melanoleuca]
          Length = 764

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 157/465 (33%), Positives = 245/465 (52%), Gaps = 23/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 186 LSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 245

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++  +  N+T  L +GG+  ++Q   L 
Sbjct: 246 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALR 305

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 306 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 365

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 366 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 425

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 426 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 485

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K +  
Sbjct: 486 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 545

Query: 360 IEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K  +                  K++ +  D+ ++     +    Q + A+ N      
Sbjct: 546 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQQSEAQINTAKRLL 605

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             G +    N+  ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 606 EKGKE--ASNHEPERSWFQTKEERKKEKIAKALQEFD---LALRG 645


>gi|281351106|gb|EFB26690.1| hypothetical protein PANDA_000812 [Ailuropoda melanoleuca]
          Length = 703

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 157/465 (33%), Positives = 245/465 (52%), Gaps = 23/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 155 LSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 214

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++  +  N+T  L +GG+  ++Q   L 
Sbjct: 215 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALR 274

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 275 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 334

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 335 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 394

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 395 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 454

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K +  
Sbjct: 455 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 514

Query: 360 IEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K  +                  K++ +  D+ ++     +    Q + A+ N      
Sbjct: 515 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQQSEAQINTAKRLL 574

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             G +    N+  ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 575 EKGKE--ASNHEPERSWFQTKEERKKEKIAKALQEFD---LALRG 614


>gi|259047319|ref|ZP_05737720.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175]
 gi|259036015|gb|EEW37270.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175]
          Length = 520

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 147/383 (38%), Positives = 227/383 (59%), Gaps = 13/383 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ ++   G+ + TPIQ +TIP  LQ  DV G AQTGTGKTA+F LPML
Sbjct: 12  MKFNELGLDSALLESIEKMGFEEATPIQAQTIPKALQGLDVIGQAQTGTGKTAAFGLPML 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  +  V+    L++ PTRELA Q  +   + G++  + V  + GG     Q ++L+
Sbjct: 72  QKIDPSKKGVQ---GLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADINRQIRQLK 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH +R  L +  +E LV+DEAD ML+MGF+  I++I   VP  RQT
Sbjct: 129 ENPQIVVGTPGRLLDHISRRTLKLGAVETLVLDEADEMLNMGFLEDIESIIKQVPENRQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D+++++   F+++P+ + + +   TA  I+  FV                  
Sbjct: 189 LLFSATMPDDIKRIGVQFMKDPEHVRIKSNEMTATLIDQYFVKCKDYEKFDIMTRLL--- 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK   + ++V
Sbjct: 246 DVQTPELTIVFGRTKRRVDELARGLEMRGYRAEGIHGDLSQQKRMSVLRDFKNNHLDILV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 306 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQEGMSVTFVTPNEMDYLRVI 365

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           E+L  K+       ++SL PP +
Sbjct: 366 EELTRKR-------MTSLRPPTQ 381


>gi|255524805|ref|ZP_05391755.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|296188658|ref|ZP_06857046.1| ATP-dependent RNA helicase DbpA [Clostridium carboxidivorans P7]
 gi|255511472|gb|EET87762.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|296046922|gb|EFG86368.1| ATP-dependent RNA helicase DbpA [Clostridium carboxidivorans P7]
          Length = 480

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 148/451 (32%), Positives = 241/451 (53%), Gaps = 20/451 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  L   ++ ++ + GY KP+ +Q + IPL+LQ  DV   +QTG+GKTA+F +P+ 
Sbjct: 4   IKFEDFRLGQDILKSIKNIGYKKPSKVQQQVIPLILQGKDVIVKSQTGSGKTAAFAIPIC 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +E      +    LIL PTRELA Q+ ++    G+   +  + + G  P + Q K+L+
Sbjct: 64  EHMEIEENDAQA---LILTPTRELAVQIKEDISNIGRFKRIRCSAIFGKQPMDTQKKELK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR LDH  RG + + NI+ L++DEAD ML+MGFI  +  I   +P +RQ 
Sbjct: 121 QRVHIIVGTPGRTLDHIKRGNMNLQNIKFLILDEADEMLNMGFIEEVSEIIENIPVSRQN 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM + ++ +S+ +++NP ++E+     T + IE      Y         L + L 
Sbjct: 181 MLFSATMPEAIENLSKKYMKNPAKVEITPEKLTVDNIEQ---KCYIIEENNKFSLLRNLL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     I+FC  K NV  +   ++ + +S   IHG + Q  R+  +++FK G  + ++
Sbjct: 238 YIENPDTAIVFCRTKNNVDYVTSRMKAEKYSCDKIHGGMLQNERLDTMNSFKMGEFRFLI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI +V HV N+D+P   E+YIHRIGRTGRAG  G A T     + + +  I
Sbjct: 298 ATDVAARGIDIDNVTHVINYDLPMEKESYIHRIGRTGRAGNKGTAITFSTPNEDRFLSEI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA--RKNNPIPQKSTGFDRRKKNYSSQKS 418
           E  I+ ++            P EK D  Q+  A   KN   P K      +  + +S+ +
Sbjct: 358 EDYIQMEIPKCEL-------PTEK-DANQNKEAFLSKNKIKPLKKG----KTADLNSEIT 405

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNM 449
            I +   +K      DI    ++S G    +
Sbjct: 406 KIYINAGKKKKIRPGDIVGAISNSTGLSAEV 436


>gi|208434194|ref|YP_002265860.1| ATP-dependent RNA helicase [Helicobacter pylori G27]
 gi|208432123|gb|ACI26994.1| ATP-dependent RNA helicase [Helicobacter pylori G27]
          Length = 492

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 141/392 (35%), Positives = 217/392 (55%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 81  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +   + T   I   F         +  +       
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL---D 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 254 TQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ +++ L     + N  ++ +  A+ +  
Sbjct: 374 KEIDSEIELLEIPTINENQIIKTLHDAKVSEG 405


>gi|323345624|ref|ZP_08085847.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
           ATCC 33269]
 gi|323093738|gb|EFZ36316.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
           ATCC 33269]
          Length = 548

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 143/447 (31%), Positives = 240/447 (53%), Gaps = 10/447 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  +   TP+Q + IP +L + DV G+AQTGTGKTA+++LP+L
Sbjct: 1   MYFDELNLNNNVLDALYDMHFDTCTPVQERCIPEILNKRDVLGVAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP----FEAQN 116
           ++L+ G         +I+ PTRELA Q+    + +G   +   ++ + G      ++ + 
Sbjct: 61  SMLDDGGYPKDAINCIIMSPTRELAQQIDQAMQGFGYYLSGVSSVAVYGGNDGNRYDQEL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  GADV+I TPGR + H + G + ++ +   ++DEADRMLDMGF   I  I   +P 
Sbjct: 121 KSLRLGADVVIATPGRFISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKQLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T QT++FSATM D++++++   L+NP  I++       +       + Y  Y  +   + 
Sbjct: 181 TCQTIMFSATMPDKIEELANTLLKNPVTIKLAVSKPAEKI----RQSAYVCYETQKMDII 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + + +   +K  IIF   K+ V  +  +L+++  +   +H +++Q  R  ++  FK G +
Sbjct: 237 KNIFNAGDLKRVIIFSGSKQKVKQITKALQQKNVNCGEMHSDLEQAQRDDMMFKFKSGQL 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ +RG+DI D+  V N+DVP+ AE+Y+HRIGRT RA R G A TL+ ++DI +
Sbjct: 297 DVIVATDIISRGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGVAITLINEDDIYY 356

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS--TGFDRRKKNYS 414
              IEK + K V+           P  K         R    I +KS  T   R K   +
Sbjct: 357 FQQIEKFLGKPVEKTALPEGLGKGPEYKSHGKPQRGGRSAKAIRRKSRDTNAHRHKPKVN 416

Query: 415 SQKSHIPLKESEKISKLQQDIQENDAD 441
                    ++   +K ++  Q  D +
Sbjct: 417 GDDRQQHKSDNSNGTKAERSRQTGDKE 443


>gi|222055835|ref|YP_002538197.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32]
 gi|221565124|gb|ACM21096.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32]
          Length = 446

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 164/456 (35%), Positives = 253/456 (55%), Gaps = 25/456 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL  +++ A+   GY  PTPIQ + IP++ +  D+   AQTGTGKTA+F LP++
Sbjct: 1   MSFDSLGLRVELLTAIASQGYTMPTPIQTQAIPVIFEGCDLLAGAQTGTGKTAAFALPIV 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +        + R PR L+L PTRELAAQV++    Y +  +L   ++ GG+  +AQ ++
Sbjct: 61  QMLGENIPPEKRRRPRALVLVPTRELAAQVSEQMNNYARRLSLRSTMIYGGVNIQAQIER 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+++ TPGR+LDH  RG + ++ I+ LV+DEADRMLD+GFI  IQ +   +P  R
Sbjct: 121 LHRGVDIVVATPGRLLDHAERGTVNLSRIKFLVLDEADRMLDLGFIDAIQKVAEYLPVKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +  ++++++  L  P+RIEV   +  A+ +            +    +   
Sbjct: 181 QTLLFSATYSQSIKQLADELLNKPRRIEVARSNIAADAVTQAIYQVEKSRKR---EMLSF 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S+      ++F   +     L   L   G    AIH N  Q  R + L+ F+ G  ++
Sbjct: 238 LISRGKWNQVLVFARTRYGADKLTEELLYDGIKAAAIHSNKSQSIRNRTLAEFRRGEFRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV N+D+P   E+Y+HRIGRTGRAG+ G A +LV+ E+   + 
Sbjct: 298 LVATDVAARGLDIEQLPHVVNYDLPQVPEDYVHRIGRTGRAGKEGIALSLVSHEEQPLLK 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKI-DIAQHNHARK--NNPIPQKSTGFDRRKKNYSS 415
           AIEKL++  +            PL+ + +  Q+   R   N     K     R+++   +
Sbjct: 358 AIEKLLKYAI------------PLQTLAEFPQYAVKRSGANKIKSDKGPSKARKREAIPA 405

Query: 416 QKSHIPLKESEKISK-----LQQDIQENDADSLGFR 446
           +++  P KES+  SK      ++   E  A  LG R
Sbjct: 406 KQAKSPAKESKSPSKASSLSRKKAAIERPAPKLGRR 441


>gi|307208568|gb|EFN85902.1| Eukaryotic initiation factor 4A-III [Harpegnathos saltator]
          Length = 403

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 208/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L 
Sbjct: 31  TFDSMGLRDELLRGIYAYGFEKPSAIQQRSIKPIMKGRDVIAQAQSGTGKTATFSIAILQ 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 91  SLDT---QVRETQVLVLSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDY 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DE+D ML+ GF   I ++   +P   Q +
Sbjct: 148 GQHVVSGTPGRVFDMIKRRVLRTRAIKMLVLDESDEMLNKGFKEQIYDVYRYLPPATQVV 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 208 LVSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+VC++HG++ Q+ R  I+  F+ G  ++++ 
Sbjct: 266 TLTITQAVIFCNTKRKVDWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRSGASRVLIT 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G +   V  +DI+ +  IE
Sbjct: 326 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVSINFVKTDDIRILRDIE 385

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 386 QYYSTQIDEMPMNVADL 402


>gi|323143379|ref|ZP_08078066.1| cold-shock DEAD-box protein A [Succinatimonas hippei YIT 12066]
 gi|322416845|gb|EFY07492.1| cold-shock DEAD-box protein A [Succinatimonas hippei YIT 12066]
          Length = 683

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 136/374 (36%), Positives = 227/374 (60%), Gaps = 7/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L LSP V+ A+ D G+  PTPIQ + IP+++   D+ G AQTGTGKTA+F LP+L
Sbjct: 53  ISFDSLQLSPLVLQAIKDLGFESPTPIQERAIPVMMSGDDMIGQAQTGTGKTAAFALPIL 112

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
           + LE      +    L+LEPTRELA QVA++F+ + ++      + I G   ++ Q + +
Sbjct: 113 SKLEP---ENKNIFALVLEPTRELALQVAESFQAFARHIEDFHVVPIYGGASYDNQIRSI 169

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA V++ TPGR++D   RGK+ ++++  +VIDEAD ML MGFI  +  I +  P  R 
Sbjct: 170 RHGAQVVVATPGRLIDLIERGKIDLSSVSYMVIDEADEMLRMGFIDDVDWILNHTPSERH 229

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++ + L  P  + + + ++TA T+   +      +          +
Sbjct: 230 TALFSATMPEAIRRIARDHLNAPVEVRIESKTTTATTVHQRYWVVSGVHKIDAMTRILEV 289

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D +   ++F   K +  ++ + L  +G +  A+HG+I QR R KI+   K G++ ++
Sbjct: 290 EPYDAV---LVFVRTKTDAEDVANKLMARGMACAALHGDIPQRQREKIIERLKNGSLDII 346

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  + HVFN+D+P  AE+Y+HRIGRTGRAGR G+A   V+  + + +  
Sbjct: 347 IATDVAARGLDVDRITHVFNYDIPYDAESYVHRIGRTGRAGRQGEAILFVSPRERRALRQ 406

Query: 360 IEKLIEKKVDWLNG 373
           IE++  ++++ +  
Sbjct: 407 IERVTRQRIEPMRM 420


>gi|282599579|ref|ZP_05971084.2| ATP-dependent RNA helicase RhlE [Providencia rustigianii DSM 4541]
 gi|282568585|gb|EFB74120.1| ATP-dependent RNA helicase RhlE [Providencia rustigianii DSM 4541]
          Length = 457

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 171/451 (37%), Positives = 261/451 (57%), Gaps = 13/451 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L+ +++ A+ + GY  PTPIQ + IP VL  +D+   AQTGTGKTA F LP+L 
Sbjct: 10  SFSDLALNEEILRAINELGYDSPTPIQQQAIPAVLAGNDLLASAQTGTGKTAGFTLPILQ 69

Query: 62  ---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 +     R  R LIL PTRELAAQVA+N ++Y ++ N+   ++ GG+    Q  K
Sbjct: 70  KLVDAPRSGNNRRPIRALILTPTRELAAQVAENVKEYSRHLNIRSFVVFGGVSINPQMMK 129

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G DVLI TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  R
Sbjct: 130 LRSGVDVLIATPGRLLDLEHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVITKLPKKR 189

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +D++++++   L NP  IEV   +S +E +       +    K+ A L   
Sbjct: 190 QNLLFSATFSDDIKQLASKLLNNPVSIEVAPRNSASEQV---TQYVHLVDKKRKAELLSF 246

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  ++  +  ++F   K     L   L K G    AIHGN  Q +R + L++FK G I++
Sbjct: 247 MIGRENWQQVLVFTRTKHGANRLAEHLNKDGIKSAAIHGNKSQGARTRALADFKSGDIRV 306

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV NF++PN AE+Y+HRIGRTGRA   G+A +LV  +++K + 
Sbjct: 307 LVATDIAARGLDIEQLPHVVNFELPNVAEDYVHRIGRTGRAEATGQAISLVCIDEVKLLK 366

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK------STGFDR-RKK 411
            IEKL++K +  +  D    +P ++   I + +      P   +      S G DR R+ 
Sbjct: 367 DIEKLLKKSIPVMAIDGYEPDPSIKAEPIQKPSQRNDRRPSENRGGNDRGSRGNDRPRRG 426

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQENDADS 442
           N ++ K              Q+ +++  ++S
Sbjct: 427 NANAGKGKSEASSGSPWKSAQKRVKQGRSES 457


>gi|15215678|gb|AAK91384.1| AT3g19760/MMB12_21 [Arabidopsis thaliana]
 gi|25090064|gb|AAN72219.1| At3g19760/MMB12_21 [Arabidopsis thaliana]
          Length = 408

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 128/377 (33%), Positives = 200/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+G+   V+  V + G+ KP+ IQ + +  +LQ  DV   AQ+GTGKT+   L +  
Sbjct: 36  SFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQ 95

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     V+    LIL PTR LA Q     +  G + N+     IGG       +KLE 
Sbjct: 96  VVDTSSREVQA---LILSPTRGLATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEH 152

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++L++DE+D ML  GF   I ++   +P   Q  
Sbjct: 153 GVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVC 212

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+  P +I V     T E I+  FVA   +  K   L       
Sbjct: 213 LVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL--YD 270

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   +    F+V ++HG++ Q+ R  I++ F+ G  ++++ 
Sbjct: 271 TLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLIT 330

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +  IE
Sbjct: 331 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIE 390

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 391 QYYSTQIDEMPMNVADL 407


>gi|271961946|ref|YP_003336142.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021]
 gi|270505121|gb|ACZ83399.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021]
          Length = 561

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 147/394 (37%), Positives = 220/394 (55%), Gaps = 13/394 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L P+++ A+   GY +PTPIQ + IP +L+  D+ G A TGTGKTA+F LP+L 
Sbjct: 11  SFADLTLRPELLHALSGLGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAAFALPVLQ 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + +       P  L+L PTRELA QV++ F  YG+     V  + GG P   Q + L++
Sbjct: 71  RMTRDGG-GGEPMALVLVPTRELAVQVSEAFHHYGRELGARVLPIYGGQPIGRQLRALQQ 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR LDH  RG L ++++E++V+DEAD MLDMGF   I+ I    P  RQT+
Sbjct: 130 GVDIVVATPGRALDHIGRGTLRLDDLEMVVLDEADEMLDMGFAEDIEAILQETPENRQTV 189

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +  ++   L +P RIE+   ++            Y             +  
Sbjct: 190 LFSATMPPRINGIARRHLNDPVRIEMGRETTAPGEAPLVRQTAYVVPRAHKPAALGRVLD 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I+FC  +  V  L  +L  +G+   A+HG + Q  R +++   + GT  L+VA
Sbjct: 250 VEAPTAAIVFCRTRDEVDQLTETLNGRGYRAEALHGGMGQEQRDRVMGRLRTGTADLLVA 309

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  + HV N+DVP+  E+Y+HRIGR GRAGR G A TL    + + +  IE
Sbjct: 310 TDVAARGLDIEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIE 369

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           ++ ++++            P+EK+       AR+
Sbjct: 370 RVTKRRI------------PIEKVPTIADLRARR 391


>gi|118574850|gb|ABL07003.1| DH [Medicago sativa]
          Length = 406

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++G+   ++  + + G+ KP+ IQ + +  ++Q  DV   AQ+GTGKT+   L +  
Sbjct: 34  SFEEMGIKDDLLRGIYNYGFEKPSAIQQRAVAPIIQGRDVIAQAQSGTGKTSMIALTVCQ 93

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     V+    LI+ PTRELA+Q        G   N+     IGG       +KLE 
Sbjct: 94  VVDTSVREVQA---LIVSPTRELASQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEH 150

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DE+D ML  GF   I ++   +P   Q  
Sbjct: 151 GVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVC 210

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 211 LISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 268

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   +    F+V ++HG++ QR R  I+S F+ GT ++++ 
Sbjct: 269 TLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQRERDAIMSEFRVGTTRVLIT 328

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +  IE
Sbjct: 329 TDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIE 388

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 389 QYYSTQIDEMPMNVADL 405


>gi|212693337|ref|ZP_03301465.1| hypothetical protein BACDOR_02849 [Bacteroides dorei DSM 17855]
 gi|212664102|gb|EEB24674.1| hypothetical protein BACDOR_02849 [Bacteroides dorei DSM 17855]
          Length = 423

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 135/430 (31%), Positives = 228/430 (53%), Gaps = 15/430 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L   V+ A+    + + TP+Q  TIP++L+  D+ G+AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELNLEEGVLQALDAMRFEECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L KG         +I+ PTRELA Q+    E +      +   + GG       ++ +
Sbjct: 61  NQLSKGGYPEDAINCVIMSPTRELAQQIDQQMEGFSYFLPASSVAVYGGNDGVRFEQEKK 120

Query: 121 RGA---DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 DV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q++++  L NP  I++       +         Y  Y ++   + Q
Sbjct: 181 RQTIMFSATMPAKIQQLAKTILNNPVEIKLAVSKPAEKI----IQTAYICYERQKLGIIQ 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    T +  IIF + K  V  +  + ++   +V  +H +++Q  R +I+  FK G I 
Sbjct: 237 SLFQDQTPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+ +RG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V++++    
Sbjct: 297 ILIATDIVSRGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANHDGCAITFVSEKEQTQF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            AIE  + + +  +        P  E++  A   + R          G  R++ NY  +K
Sbjct: 357 KAIENFLGRNIYKI--------PVPEELGEAPEYNPRSGAGRSNHKGGSSRKQGNYKGKK 408

Query: 418 SHIPLKESEK 427
           +  P   + +
Sbjct: 409 NGTPSANNRR 418


>gi|149189294|ref|ZP_01867580.1| DNA and RNA helicase [Vibrio shilonii AK1]
 gi|148836853|gb|EDL53804.1| DNA and RNA helicase [Vibrio shilonii AK1]
          Length = 477

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 176/446 (39%), Positives = 256/446 (57%), Gaps = 13/446 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ D GY K +PIQ + IP +++  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFESLGLSTPILRAIQDLGYEKASPIQEQAIPAIIEGKDVMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G+  +    R LIL PTRELAAQV ++  KY  N  LT   + GG+    Q  KL
Sbjct: 61  ERLNSGQRVKGNHIRALILTPTRELAAQVHESVFKYSTNLPLTSQCVFGGVKINPQMLKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DV++ TPGR+LD + +  +  + +E+LV+DEADRMLDMGF   I+ I  L+P  RQ
Sbjct: 121 RKGCDVMVATPGRLLDLYQQNAIKFSQLEVLVLDEADRMLDMGFFRDIKKILDLLPKNRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT ++E++ +++  + NP  + V  P+ST + +     + Y    K+   +   L
Sbjct: 181 NLLFSATFSNEIRDLAKGLVNNPIEVSVTPPNSTTKLV---EQSLYVTDKKQKPAMLAKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               + K  ++FC  K     L   LE +  +  AIHGN  Q +R K L +FK G I+++
Sbjct: 238 IDDGSWKQVLVFCKTKHGANRLARFLEGKKITALAIHGNKSQGARTKALEHFKTGQIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V NFD+P+ +E+Y+HRIGRTGRAG  GKA++LV  ++ K +  
Sbjct: 298 VATDIAARGLDIPQLPQVVNFDLPHVSEDYVHRIGRTGRAGETGKAYSLVCADEAKELFG 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           IE+LI K +D    +L    P    P  K+D       +   P   K  G   ++K+ +S
Sbjct: 358 IERLIGKLIDRF--ELEGFKPVNAVPESKLDTRPIKPKKPKKPKKPKQEG---QEKSTAS 412

Query: 416 QKSHIPLKESEKISKLQQDIQENDAD 441
                    SEK  K ++   + ++D
Sbjct: 413 GHGRADKPRSEKPRKPRKFNTKRNSD 438


>gi|225464928|ref|XP_002275011.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 412

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 129/378 (34%), Positives = 203/378 (53%), Gaps = 5/378 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  +G+   ++  +   G+ KP+ IQ + +  ++Q  DV   AQ+GTGKT+   L + 
Sbjct: 39  MSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVLPIIQGRDVIAQAQSGTGKTSMIALTVC 98

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++     V+    LIL PTRELA+Q        G   N+     IGG       +KLE
Sbjct: 99  QMVDTSNREVQA---LILSPTRELASQTEKVILAIGDFINIQAHACIGGKSVGEDIRKLE 155

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  ++  TPGR+ D   R  L    I++LV+DE+D ML  GF   I ++   +P   Q 
Sbjct: 156 YGVHIVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQV 215

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SAT+ +E+ +++  F+ +P RI V     T E I+  FVA   +  K   L      
Sbjct: 216 VLISATLPNEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--Y 273

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IFCN K+ V  L   +    F+V ++HG++ Q+ R  I++ F+ GT ++++
Sbjct: 274 DTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFRSGTTRVLI 333

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +  I
Sbjct: 334 TTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKTDDIKILRDI 393

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+    ++D +  +++ L
Sbjct: 394 EQYYSTQIDEMPMNVADL 411


>gi|322788219|gb|EFZ14001.1| hypothetical protein SINV_14366 [Solenopsis invicta]
          Length = 423

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++GL  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L 
Sbjct: 51  TFDNMGLRDELLRGIYAYGFEKPSAIQQRSIKPIMKGRDVIAQAQSGTGKTATFSIAILQ 110

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 111 SLDT---QVRETQVLVLSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDY 167

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DE+D ML+ GF   I ++   +P   Q +
Sbjct: 168 GQHVVSGTPGRVFDMIKRRVLRTRAIKMLVLDESDEMLNKGFKEQIYDVYRYLPPATQVV 227

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 228 LVSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 285

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+VC++HG++ Q+ R  I+  F+ G  ++++ 
Sbjct: 286 TLTITQAVIFCNTKRKVDWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRSGQSRVLIT 345

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G +   V  +DI+ +  IE
Sbjct: 346 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVSINFVKTDDIRILRDIE 405

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 406 QYYSTQIDEMPMNVADL 422


>gi|307169387|gb|EFN62107.1| Eukaryotic initiation factor 4A-III [Camponotus floridanus]
          Length = 402

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++GL  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L 
Sbjct: 30  TFDNMGLRDELLRGIYAYGFEKPSAIQQRSIKPIMKGRDVIAQAQSGTGKTATFSIAILQ 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 90  SLDT---QVRETQVLVLSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDY 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DE+D ML+ GF   I ++   +P   Q +
Sbjct: 147 GQHVVSGTPGRVFDMIKRRVLRTRAIKMLVLDESDEMLNKGFKEQIYDVYRYLPPATQVV 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 207 LVSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+VC++HG++ Q+ R  I+  F+ G  ++++ 
Sbjct: 265 TLTITQAVIFCNTKRKVDWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRSGQSRVLIT 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G +   V  +DI+ +  IE
Sbjct: 325 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVSINFVKTDDIRILRDIE 384

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 385 QYYSTQIDEMPMNVADL 401


>gi|229593097|ref|YP_002875216.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
 gi|229364963|emb|CAY53082.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 628

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 166/404 (41%), Positives = 246/404 (60%), Gaps = 15/404 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+ 
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 60  ------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                     +  R   R PR L+L PTRELAAQV D+F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRAL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   L+K G +  AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G+++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GSVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHAR 394
            K + +IE++ ++K+   D +  D S++    EK ++ +    R
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDASAVEA--EKPEVRERPDVR 399


>gi|48136057|ref|XP_393356.1| PREDICTED: eukaryotic initiation factor 4A-III-like isoform 1 [Apis
           mellifera]
          Length = 403

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++GL  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L 
Sbjct: 31  TFDNMGLRDELLRGIYAYGFEKPSAIQQRSIKPIMKGRDVIAQAQSGTGKTATFSIAILQ 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 91  SLDT---QVRETQVLVLSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDY 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DE+D ML+ GF   I ++   +P   Q +
Sbjct: 148 GQHVVSGTPGRVFDMIKRRVLRTRAIKMLVLDESDEMLNKGFKEQIYDVYRYLPPATQVV 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 208 LVSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+VC++HG++ Q+ R  I+  F+ G  ++++ 
Sbjct: 266 TLTITQAVIFCNTKRKVDWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRSGQSRVLIT 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G +   V  +DI+ +  IE
Sbjct: 326 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVSINFVKTDDIRILRDIE 385

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 386 QYYSTQIDEMPMNVADL 402


>gi|86134655|ref|ZP_01053237.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
 gi|85821518|gb|EAQ42665.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
          Length = 438

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 176/441 (39%), Positives = 252/441 (57%), Gaps = 17/441 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS   V AV + GY KP+PIQ K IP +L+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFKSLGLSDAFVKAVEEKGYTKPSPIQEKAIPHILEGKDVLASAQTGTGKTAGFTLPVL 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L + +     P    +L PTRELAAQV DN  +Y K  N+  A++ GG+   +Q   L
Sbjct: 61  QYLSETKHPKYRPIRALVLTPTRELAAQVHDNVREYSKYVNIKSAVVFGGVKAASQIATL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG D+L+ TPGR+LD  ++  +    I++ ++DEADRMLDMGF+  I  I S +P  RQ
Sbjct: 121 KRGVDILVATPGRLLDLHDQKAVSFKRIDVFILDEADRMLDMGFVRDINKIISYMPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT + E++K++   L+NP  +E    +STA+ + H     Y    KK       L
Sbjct: 181 NLMFSATFSKEIKKLASGILKNPVEVETAPQNSTAKKVSH---KVYQIDKKKKTEFTIKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     +IF   K     L  +L K   S  AIHGN  Q +R K L NFK+ TI+++
Sbjct: 238 IKDNNWNQVLIFTRTKHGANRLTQNLIKSKISAAAIHGNKSQGARTKALKNFKDNTIKVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + +V N+++PN  E+Y+HRIGRTGRAG  G+A +LV  E+ ++   
Sbjct: 298 VATDIAARGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGAKGEAISLVCSEETEYQKE 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IEKL+ +K+       S +    E  D A    A        +S G   +KK  +  KS 
Sbjct: 358 IEKLLNEKLT------SIVVEGFEPTDTAAPKRA------ASQSKGSFNKKKKTTQGKSD 405

Query: 420 IPLKESEKISKLQQDIQENDA 440
            P K++++ +  ++    N++
Sbjct: 406 TP-KKAKRTNNYKRRKPANNS 425


>gi|184154685|ref|YP_001843025.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
 gi|183226029|dbj|BAG26545.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
          Length = 492

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 156/443 (35%), Positives = 245/443 (55%), Gaps = 14/443 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K++ A+  +GY + TPIQ +TIP+VL   DV G AQTGTGKTA+F LP +
Sbjct: 1   MYFSELGLSNKLLKAIQRSGYEEATPIQEQTIPMVLAGKDVIGQAQTGTGKTAAFGLPTI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++         +TLI+ PTRELA Q  +   + GK   + V ++ GG     Q + LE
Sbjct: 61  EHVDV---ENPAIQTLIISPTRELAIQTEEELFRLGKEKRVKVQVVYGGADIRRQIRSLE 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGR+ DH  RG + ++ ++ LV+DEAD ML+MGF+  I++I    P  RQT
Sbjct: 118 KNPQILVGTPGRLRDHLRRGTVDLSGVQTLVLDEADEMLNMGFLEDIEDIIKQTPSERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++++   F+ +P+ +++     T + ++  +V                + 
Sbjct: 178 LLFSATMPPEIKRIGVQFMHDPQTVKIKAKELTTDLVDQYYVRAKDYEKFDIMTR---MI 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K+ V  L   L  +G++   IHG++ Q  R KI+  FKEG + ++V
Sbjct: 235 DVQDPDLTIVFGRTKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P+  ++Y+HRIGRTGRAG HG + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMNYLHEI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EKL   +       +  L PP E+ +  +   A   N I          + +  + K   
Sbjct: 355 EKLTRAR-------MLPLKPPTEE-EAFRGQVASAYNDIDSLVADPTTNRYSEDAAKLLE 406

Query: 421 PLKESEKISKLQQDIQENDADSL 443
                E ++ L  D+ ++DA  +
Sbjct: 407 KYDAVELVAALLNDLTKDDASQV 429


>gi|210134447|ref|YP_002300886.1| ATP-dependent RNA helicase [Helicobacter pylori P12]
 gi|210132415|gb|ACJ07406.1| ATP-dependent RNA helicase [Helicobacter pylori P12]
          Length = 492

 Score =  179 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 140/392 (35%), Positives = 216/392 (55%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 81  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +   + T   I   F         +  +       
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMHLL---D 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 254 TQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ +++       + N  ++ +  A+ +  
Sbjct: 374 KEIDSEIELFEIPTINENQIIKTLHDAKVSEG 405


>gi|237710076|ref|ZP_04540557.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA]
 gi|237723636|ref|ZP_04554117.1| ATP-dependent RNA helicase [Bacteroides sp. D4]
 gi|265753725|ref|ZP_06089080.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA]
 gi|229437984|gb|EEO48061.1| ATP-dependent RNA helicase [Bacteroides dorei 5_1_36/D4]
 gi|229456169|gb|EEO61890.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA]
 gi|263235439|gb|EEZ20963.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA]
          Length = 423

 Score =  179 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 135/430 (31%), Positives = 228/430 (53%), Gaps = 15/430 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L   V+ A+    + + TP+Q  TIP++L+  D+ G+AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELNLEEGVLQALDAMRFEECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L KG         +I+ PTRELA Q+    E +      +   + GG       ++ +
Sbjct: 61  NQLSKGGYPEDAINCVIMSPTRELAQQIDQQMEGFSYFLPASSVAVYGGNDGVRFEQEKK 120

Query: 121 RGA---DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 DV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q++++  L NP  I++       +         Y  Y ++   + Q
Sbjct: 181 RQTIMFSATMPAKIQQLAKTILNNPVEIKLAVSKPAEKI----IQTAYICYERQKLGIIQ 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    T +  IIF + K  V  +  + ++   +V  +H +++Q  R +I+  FK G I 
Sbjct: 237 SLFQDQTPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+ +RG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V++++    
Sbjct: 297 ILIATDIVSRGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANHDGCAITFVSEKEQTQF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            AIE  + + +  +        P  E++  A   + R          G  R++ NY  +K
Sbjct: 357 KAIENFLGRNIYKI--------PVPEELGEAPEYNPRSGAGRSNHKGGSSRKQGNYKGKK 408

Query: 418 SHIPLKESEK 427
           +  P   + +
Sbjct: 409 NGTPGANNRR 418


>gi|217033461|ref|ZP_03438891.1| hypothetical protein HP9810_1g75 [Helicobacter pylori 98-10]
 gi|216944166|gb|EEC23594.1| hypothetical protein HP9810_1g75 [Helicobacter pylori 98-10]
          Length = 492

 Score =  179 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 140/392 (35%), Positives = 216/392 (55%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 81  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +   + T   I   F         +  +       
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL---D 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 254 TQAPKKSIVFMRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDIGGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ +++       + N  ++ +  A+ +  
Sbjct: 374 KEIDSEIELFEIPTINENQIIKTLHDAKVSEG 405


>gi|308182422|ref|YP_003926549.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan4]
 gi|308064607|gb|ADO06499.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan4]
          Length = 492

 Score =  179 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 140/392 (35%), Positives = 217/392 (55%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 81  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +   ++T   I   F         +  +       
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSNTTNTDITQRFYVINEHERAEAIMHLL---D 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 254 TQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ +++       + N  ++ +  A+ +  
Sbjct: 374 KEIDSEIELFEIPTINENQIIKTLHDAKVSEG 405


>gi|297830638|ref|XP_002883201.1| hypothetical protein ARALYDRAFT_479492 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329041|gb|EFH59460.1| hypothetical protein ARALYDRAFT_479492 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 408

 Score =  179 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+G+   V+  V + G+ KP+ IQ + +  +LQ  DV   AQ+GTGKT+   L +  
Sbjct: 36  SFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQ 95

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     V+    LIL PTRELA Q     +  G + N+     IGG       +KLE 
Sbjct: 96  VVDTSSREVQA---LILSPTRELATQTEKTIQAIGLHANIQAHACIGGKSVGEDIRKLEH 152

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++L++DE+D ML  GF   I ++   +P   Q  
Sbjct: 153 GVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVC 212

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+  P +I V     T E I+  FVA   +  K   L       
Sbjct: 213 LVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL--YD 270

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   +    F+V ++HG++ Q+ R +I++ F+ G  ++++ 
Sbjct: 271 TLTITQAVIFCNTKRKVDYLSEKMRSNNFTVSSMHGDMPQKERDEIMNQFRSGESRVLIT 330

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +  IE
Sbjct: 331 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIE 390

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 391 QYYSTQIDEMPMNVADL 407


>gi|149194827|ref|ZP_01871921.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus
           TB-2]
 gi|149134986|gb|EDM23468.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus
           TB-2]
          Length = 460

 Score =  179 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 147/449 (32%), Positives = 239/449 (53%), Gaps = 35/449 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L  +++  + + G+ KP+PIQ K IP++L+  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MTFKDFKLKKEIIKRLEEIGFEKPSPIQEKAIPVILEGKDVVAQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + ++K    +      I+ PTRELA QV++   ++GK   +  A + GG  +  Q K +E
Sbjct: 61  SKIKKDEKAL------IITPTRELAIQVSEEIFRFGKYLGVHTATVYGGSSYNRQIKHIE 114

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++      +     +   +    + +++DEAD MLDMGF+  I+ I   VP  RQT
Sbjct: 115 NSQFIIATPGRLLDLL--KSGKIDIAPKYVILDEADEMLDMGFLDDIKEIFKFVPSNRQT 172

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + ++ +++  L+NP+ I +     T E I+  F        K   +      
Sbjct: 173 LLFSATMPEPIKNLAKTILKNPEFITITRKQVTNENIKEYFYVIDEFERKDALIRL---I 229

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+FC  KK+V ++   L   GF    +HG++DQR R +++  FK   I+++V
Sbjct: 230 DYKNPTKSIVFCRTKKDVDDIAEFLSGAGFDAKGLHGDMDQRKREEVIRGFKSDRIEILV 289

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ +V HVFN+ +P   E+Y+HRIGRTGRAG+ G A +LV   + + ++ I
Sbjct: 290 ATDVAARGLDVNNVSHVFNYHLPLDPESYVHRIGRTGRAGKEGMAISLVTPHEFRALNRI 349

Query: 361 EKLIE--------------KKVDWLNGDLSSLNPPLEKIDIAQH--------NHARKNNP 398
           +K+ +              K++  +   LS+++P  + I+I +           A K   
Sbjct: 350 QKISKIILKEIPTLADVKDKEIQKIIDKLSNIDPTPKSIEIIEELQNEYDLMTIAIKLAS 409

Query: 399 I--PQKSTGFDRRKKNYSSQKSHIPLKES 425
           +   ++S G DR  K+    K  I  ++S
Sbjct: 410 MLFDKESDGKDRIGKSIKEAKRLIEREKS 438


>gi|261404961|ref|YP_003241202.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|261281424|gb|ACX63395.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
          Length = 506

 Score =  179 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 164/467 (35%), Positives = 255/467 (54%), Gaps = 18/467 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +SP ++ A+    Y  PTPIQ + IP VL   D+ G AQTGTGKTA+F +PM+
Sbjct: 1   MTFENLNISPVILKALAKENYKAPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMI 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L +   +  M R +   +L PTRELA Q++DN + Y +   L    ++GG+  + Q +
Sbjct: 61  QLLNQQPPKPGMGRRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQER 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++GAD+LI TPGR+LD  N+  + + ++EILV+DEADRMLDMGFI  ++ I + +P  
Sbjct: 121 ALQQGADILIATPGRLLDLMNQKHVDLQHVEILVLDEADRMLDMGFIHDVKRIIAKMPSK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTL FSATM  E+ ++ +  L NP ++E+   SSTAE IE                   
Sbjct: 181 KQTLFFSATMPAEITQLVQTLLHNPVKVEITPVSSTAERIEQSVYLLETGNK---QQQLN 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++ + ++F   K+    +   L K   +  AIHG+  Q SR   L+NFK G  +
Sbjct: 238 ELMKDPSIVSALVFTRTKRGADRVARGLNKVNITAQAIHGDKSQTSRQTALNNFKSGATR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++ HV NF++PN  E Y+HRIGRTGRAG  G A +    +++  +
Sbjct: 298 VLVATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAISFCEVDEVPFL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IEKLI K +  +      ++  L          A K +P P+  +    + ++ +S+ 
Sbjct: 358 RDIEKLIGKSIPEVKDHAFPMSGAL---------RAAKVDPTPKSGSSKPGKGRSAASRP 408

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
           +     +++   K + D   N       +    A + PK       K
Sbjct: 409 AK---PKADTARKPKADAARNPKTGAPRQSRQDAGIKPKTDAARQSK 452


>gi|147902730|ref|NP_001084200.1| eukaryotic initiation factor 4A-III-B [Xenopus laevis]
 gi|82189798|sp|O42226|I4A3B_XENLA RecName: Full=Eukaryotic initiation factor 4A-III-B;
           Short=XeIF-4AIII; Short=eIF-4A-III-B; Short=eIF4A-III-B;
           AltName: Full=ATP-dependent RNA helicase DDX48-B;
           AltName: Full=ATP-dependent RNA helicase eIF4A-3-B;
           AltName: Full=DEAD box protein 48-B; AltName:
           Full=Eukaryotic translation initiation factor 4A isoform
           3-B
 gi|2443810|gb|AAB71410.1| eukaryotic translation initiation factor XeIF-4AIII [Xenopus
           laevis]
          Length = 414

 Score =  179 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 203/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ K I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 42  TFDTMGLREDLLRGIYAYGFEKPSAIQQKAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+      +    LIL PT+ELA Q+       G   N+     IGG       +KL+ 
Sbjct: 102 CLDIQIRETQA---LILAPTKELARQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDY 158

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q  
Sbjct: 159 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVC 218

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 219 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 276

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 277 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 337 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 396

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 397 QYYSTQIDEMPMNVADL 413


>gi|116495993|ref|YP_807727.1| superfamily II DNA/RNA helicase [Lactobacillus casei ATCC 334]
 gi|191639473|ref|YP_001988639.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
 gi|227533029|ref|ZP_03963078.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239630391|ref|ZP_04673422.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|116106143|gb|ABJ71285.1| Superfamily II DNA and RNA helicase [Lactobacillus casei ATCC 334]
 gi|190713775|emb|CAQ67781.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
 gi|227189430|gb|EEI69497.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239526674|gb|EEQ65675.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|327383567|gb|AEA55043.1| DEAD box helicase family protein [Lactobacillus casei LC2W]
 gi|327386759|gb|AEA58233.1| DEAD box helicase family protein [Lactobacillus casei BD-II]
          Length = 502

 Score =  179 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 143/368 (38%), Positives = 216/368 (58%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ A+  +G+ + TPIQ +TIPLVL   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFKELGLDHDLLKAIAQSGFEEATPIQAETIPLVLAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++K    ++    L++ PTRELA Q  +   + G++  + V  + GG     Q ++L 
Sbjct: 61  QNIDKADRSIQ---ALVISPTRELAIQTQEELYRLGQDKKIKVQAVYGGADIRRQIRQLS 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILDH  R  L + N+++LV+DEAD MLDMGFI  I+ I   +P  RQT
Sbjct: 118 EHPQIVVGTPGRILDHIGRHTLKLQNLKVLVLDEADEMLDMGFIDDIEKIVEQMPTARQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+   + +++  F+  P  +++     TA+T+E  +V                  
Sbjct: 178 LLFSATIPASIMRLTNKFMHEPVTVKIKAKELTADTVEQYYVRAKDYEKFDVMTRL---F 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF   K+ V  L   L+ +G+    IHG++ Q+ RM +L  FK G +  +V
Sbjct: 235 DVQDPDLALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG  G + T V   +I+++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIEYLHTI 354

Query: 361 EKLIEKKV 368
           E L +K++
Sbjct: 355 EDLTKKRM 362


>gi|310822103|ref|YP_003954461.1| RNA helicase dead [Stigmatella aurantiaca DW4/3-1]
 gi|309395175|gb|ADO72634.1| RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
          Length = 621

 Score =  179 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 146/368 (39%), Positives = 205/368 (55%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL P +V A+   GY +PTPIQ   +P +L+  D+ GIA TGTGKTA+F LP+L 
Sbjct: 50  TFESLGLLPPLVEALSALGYEEPTPIQRAALPPLLEGKDLLGIAATGTGKTAAFSLPLLQ 109

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  G         L+L PTRELA QVA+   +YG+   ++V  L GG     Q + L+R
Sbjct: 110 RITPGAHAPFTASALVLVPTRELAMQVAEAIHRYGQKLGISVVPLYGGQVISQQLRVLKR 169

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR LDH  R  L +  + ++V+DEAD MLDMGF   ++ I S  P  RQT 
Sbjct: 170 GVDVVVATPGRALDHLQRKTLKLEQVRVVVLDEADEMLDMGFAEDLEAILSSTPEKRQTA 229

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +  ++E  L+ P R+ +      +  +       Y             +  
Sbjct: 230 LFSATLPPRIASIAERHLREPVRVRIAREKVESGELPRVRQTAYIVPRAFKVATLSRVLD 289

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I+FC  +  V  L  SL   G+   A+HG + Q  R +++   K  +  L+VA
Sbjct: 290 VEAPTAAIVFCRTRTEVDELTLSLNGHGWRAHALHGGMSQEQRDRVIKQLKSHSADLLVA 349

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  + HV NFDVPN  E Y+HRIGRTGRAGR G A TLV   + + +  IE
Sbjct: 350 TDVAARGLDISRLSHVVNFDVPNAPEAYVHRIGRTGRAGREGVAITLVEPREHRLLRNIE 409

Query: 362 KLIEKKVD 369
           KL  ++++
Sbjct: 410 KLTGQRIE 417


>gi|114775697|ref|ZP_01451265.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
           PV-1]
 gi|114553808|gb|EAU56189.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
           PV-1]
          Length = 628

 Score =  179 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 143/372 (38%), Positives = 221/372 (59%), Gaps = 7/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  V+ ++ D GY   TPIQ  TIPL+L+  DV G AQTGTGKTA+F LP+L++
Sbjct: 7   FNELGLSEPVLKSIKDQGYENATPIQAATIPLLLEGRDVLGQAQTGTGKTAAFALPLLSM 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++  +     P+ L+L PTRELA QVA+ F++Y  +      L I  G  ++ Q ++L+R
Sbjct: 67  IDIDQRD---PQVLVLAPTRELAIQVAEAFQQYAHHIKGFHVLPIYGGQSYDIQLRQLKR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  R  L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 124 GAHVVVGTPGRVMDHIRRKTLNLSGLKTLVLDEADEMLRMGFIDDVKWVLEQLPEQRQIA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K++++ L+NP+     T      T        +    +        +  
Sbjct: 184 LFSATMPAVIRKIAQSHLKNPQ---HVTIKDKTTTAPTIRQRFWMVSGRNKIDALTRILE 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     IIF   K     +   LE +G++  A++G++ Q  R +I++  K G I ++VA
Sbjct: 241 FEPFDGMIIFVRTKTATDEVAERLEARGYAASALNGDVKQSQREQIVNRLKSGKIDIVVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   VA  + + + +IE
Sbjct: 301 TDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRKGDAILFVAPREKRMLYSIE 360

Query: 362 KLIEKKVDWLNG 373
           K   ++V+ L  
Sbjct: 361 KATNQRVEQLEM 372


>gi|28211174|ref|NP_782118.1| ATP-dependent RNA helicase [Clostridium tetani E88]
 gi|28203614|gb|AAO36055.1| ATP-dependent RNA helicase [Clostridium tetani E88]
          Length = 481

 Score =  179 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 131/368 (35%), Positives = 214/368 (58%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F   G+S  ++ A+L  GY  P+ +Q K IP+ ++  D+   ++TG+GKTASF +P+ 
Sbjct: 4   LSFKSFGISEDILEALLKLGYKNPSKVQQKVIPVAIKNKDIIVKSKTGSGKTASFGIPIC 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +   P+ L+L PTREL  QV ++ +  G+   +  + + G  PF+ Q  +L+
Sbjct: 64  ENVNLEERK---PQALVLTPTRELCIQVKEDIKNIGRFKRIKCSAIFGKQPFKTQALELK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V++ TPGR LDH  RG + ++ I+  ++DE D M +MGFI  +++I   +P  R  
Sbjct: 121 QRTHVVVGTPGRTLDHIERGTIDLDKIKYFIVDEGDEMFNMGFIDQVESIMRKLPKKRVN 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ ++++K+ E ++++P  IEVN    T E I+H     Y    K    L   + 
Sbjct: 181 MLFSATIPEKIEKLCEKYMKSPIMIEVNPEEFTEEKIQH---IYYEIEDKNKFDLLNKIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +   + IIFC  ++NV  L   +E + +   A+HG + Q  R+ I++ FK G    +V
Sbjct: 238 ITENPDSSIIFCRTQENVNKLAKLMENKDYPCKALHGGMMQDKRIDIMNRFKRGEFMFLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+D+ +V H+ N+D+P   ENY+HR GRTGRAGR G A +LV   + +    I
Sbjct: 298 ATDLAARGIDVENVTHIINYDIPMEKENYVHRTGRTGRAGREGCAISLVTPYEDRFFKQI 357

Query: 361 EKLIEKKV 368
           E+ I  K+
Sbjct: 358 EEYIGFKI 365


>gi|329960847|ref|ZP_08299126.1| ATP-dependent RNA helicase RhlE [Bacteroides fluxus YIT 12057]
 gi|328532133|gb|EGF58937.1| ATP-dependent RNA helicase RhlE [Bacteroides fluxus YIT 12057]
          Length = 423

 Score =  179 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 159/429 (37%), Positives = 246/429 (57%), Gaps = 15/429 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+ + GY  PTPIQ K+IP++LQ  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MTFENLKLIEPILKALQEEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K   R    + LIL PTRELA Q+ ++FE YG+   L   ++ GG+  + Q  +L+
Sbjct: 61  QKLYKTDNRKG-IKALILTPTRELAIQIGESFEAYGRYTGLRHTVIFGGVGQKPQTDELK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +L+ TPGR+ D  N+G + +  ++  V+DEADRMLDMGFI  I+ I   +P  RQT
Sbjct: 120 RGVQILVATPGRLQDLVNQGFINLKALDFFVLDEADRMLDMGFIHDIRRILKFLPAKRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++ ++ + L +P+++EV   SST +TI         +  K   +      
Sbjct: 180 LFFSATMPPEIETLANSMLTDPEKVEVTPASSTVDTISQSVYFVEKKEKKDLLIHLL--- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++ + +IF   K     L  +L K G    AIHGN  Q +R + L+ FK  T+++++
Sbjct: 237 KDPSIASVLIFTRTKHGADKLARTLSKSGIPAEAIHGNKSQNARQRALTGFKSHTLRVLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+++PN  E Y+HRIGRTGRAG  G A +    E++ ++  I
Sbjct: 297 ATDIAARGIDVDQLSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCESEELPYLKDI 356

Query: 361 EKLIEKKVDWLNGD-------LSSLNPPLEKIDI-AQHNHARKNNPIPQKSTGFDRRKKN 412
           +KLI K +  +          + +     E+I + A+ N   + N   + +  F RRKK 
Sbjct: 357 QKLIGKTIPIIKDHPFITTDGIQAQEKKTEEIKVKAKENKKYRGN---RSNGDFWRRKKR 413

Query: 413 YSSQKSHIP 421
            +  ++   
Sbjct: 414 AAQPEAKKK 422


>gi|168236748|ref|ZP_02661806.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194735725|ref|YP_002113911.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194711227|gb|ACF90448.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197290147|gb|EDY29504.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 453

 Score =  179 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 166/435 (38%), Positives = 243/435 (55%), Gaps = 22/435 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 QMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKI--------------DIAQHNHARKNNPIPQ 401
             IEKL++K++  +   G     +   E I                 Q    R   P  Q
Sbjct: 358 RDIEKLLKKEIPRITTPGYEPDPSIKAEPIQNGRQQRGGGGRDRGQNQGGAGRSQQPRRQ 417

Query: 402 KSTGFDRRKKNYSSQ 416
            S     + K  + +
Sbjct: 418 DSGAAKAKPKPRTGE 432


>gi|323465797|gb|ADX69484.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus helveticus
           H10]
          Length = 499

 Score =  179 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 146/387 (37%), Positives = 230/387 (59%), Gaps = 9/387 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+  ++ A+  +G+ + TPIQ +TIPL LQ  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-L 119
             ++K   + +  + +I+EPTRELA Q  +   + G++ +  V ++ GG     Q +   
Sbjct: 61  QSIDK---KEKAIQAIIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLK 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LDH  RG + ++ +  +V+DEAD MLDMGFI  I++I   V   +Q
Sbjct: 118 HHVPSILVGTPGRLLDHLKRGTIDLDKVNTVVLDEADEMLDMGFIQDIESILKYVKNCKQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + ++ E F+++P  +++     TA+ I+  FV                 
Sbjct: 178 TLLFSATMPKPILRIGEKFMKDPAIVQIKAKELTADLIDQYFVRAKESEKFDIMCRL--- 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++F   K+ V  L   L+ +G++   IHG++ Q  RM +L  F+EG + ++
Sbjct: 235 IDVQGPDLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGVSVTFVTPNEIGYMRT 354

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEK 384
           IE+L +KK+    L  D  +L   L++
Sbjct: 355 IEQLTKKKMSPLRLPTDDQALRGQLKQ 381


>gi|24375277|ref|NP_719320.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24350080|gb|AAN56764.1|AE015812_3 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 535

 Score =  179 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 174/441 (39%), Positives = 253/441 (57%), Gaps = 17/441 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV + GY  P+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   +    R L+L PTRELAAQV ++ E YGK   L  A++ GG+P   Q  KL
Sbjct: 61  ELLAKGHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR+LD   +  +  N +EILV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++++++  + +P  I V   ++ A T++               +     
Sbjct: 181 NLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQKSALLIQL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  +  ++F   K     L  SL +   S  AIHGN  Q +R K L++FK G ++++
Sbjct: 238 IKQENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+IK +  
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKD 357

Query: 360 IEKLIEKKVDWLNGD---------LSSLNPPLEKIDIAQHNHARKNN----PIPQKSTGF 406
           IE+LI + ++    +          ++LNP  +   +    + RK+     P P+  +G 
Sbjct: 358 IERLINRVLERQEVEGFSPVHALPETTLNPQGKDTKVKAVANHRKHRSAGKPAPRSGSGR 417

Query: 407 DRRKKNYSSQKSHIPLKESEK 427
           D +    +SQ+ +     +  
Sbjct: 418 DTQGNRENSQRQNSASSRNSN 438


>gi|163848628|ref|YP_001636672.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222526563|ref|YP_002571034.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163669917|gb|ABY36283.1| DEAD/DEAH box helicase domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450442|gb|ACM54708.1| DEAD/DEAH box helicase domain protein [Chloroflexus sp. Y-400-fl]
          Length = 552

 Score =  179 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 141/372 (37%), Positives = 220/372 (59%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGLS  +V  +   GY +PTPIQ + IPL+L   DV   AQTGTGKTA+F LPM+ 
Sbjct: 3   TFAELGLSDALVSTLSGLGYDEPTPIQAQAIPLLLAGRDVIAQAQTGTGKTAAFALPMIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                     + + L+L PTRELA QVA+   +YG++ +L V  + GG P E Q + L +
Sbjct: 63  R----VTDALVVQALVLAPTRELAVQVAEAIHRYGRHRSLRVLPIYGGQPIERQLRGLAQ 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH  RG L  +++ ++V+DEAD MLDMGF   ++ I  L P  RQT 
Sbjct: 119 GTQVVVGTPGRVLDHLKRGSLRFDHLRMVVLDEADEMLDMGFAEELEAILQLTPTERQTA 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +Q ++  + + P R+ +     T   I       Y   ++        +  
Sbjct: 179 LFSATLPPAVQNLTLRYTRQPVRVSIAAEQLTTPRI---RQTYYEVLARDKLDALCRVLD 235

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  I+FC  ++   ++   L+ +G++  ++HG++ Q +R +++  F+EG + ++VA
Sbjct: 236 AEMPQLAIVFCRTRQEADDIGERLQGRGYAAESLHGDLSQAARDRVMRRFREGQLDVLVA 295

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI +V HV N+DVP   E+Y+HRIGRTGRAGR G A T +   + + +  IE
Sbjct: 296 TDVAARGLDIAEVSHVINYDVPTDPESYVHRIGRTGRAGREGVAITFITPRERRMLQIIE 355

Query: 362 KLIEKKVDWLNG 373
           ++   +++    
Sbjct: 356 RVTRTRIERCQM 367


>gi|310659566|ref|YP_003937287.1| ATP-dependent RNA helicase; cold shock [Clostridium sticklandii DSM
           519]
 gi|308826344|emb|CBH22382.1| ATP-dependent RNA helicase; cold shock [Clostridium sticklandii]
          Length = 515

 Score =  179 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 168/467 (35%), Positives = 249/467 (53%), Gaps = 23/467 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL  +++ AVLD G+  PTPIQ + IPL +Q  D+ G AQTGTGKTA+F +P+L+ 
Sbjct: 4   FNELGLQEELLKAVLDMGFDSPTPIQEQIIPLAMQGIDLIGQAQTGTGKTAAFGIPLLSK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +EKG   V+    LIL PTRELA QV+    +  K  N+    + GG     Q + L++ 
Sbjct: 64  IEKGNKAVQ---ALILAPTRELALQVSQEINRLAKYKNVEAIAIYGGEDIGKQIRGLKKN 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR +DH  R  + + NI+ +++DEAD ML MGFI  I+ I   VP  RQTLL
Sbjct: 121 PQIVVATPGRFMDHMRRNTINLANIQTVILDEADEMLSMGFIEDIETILQEVPSERQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +Q VS+ F+++P+ + V   + T +TI            +        L   
Sbjct: 181 FSATMPKRIQSVSQKFMKSPQTVAVKNKTMTVDTI---EQRYLDLKERDKFDALCRLMDI 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  IIF   K+ V  L  +L  +G+ V  IHG++ Q  R K+L  FK G+I+++VA+
Sbjct: 238 HCPELSIIFGRTKRRVDELSEALSIRGYDVEGIHGDMKQERREKVLRRFKRGSIKILVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HVFNFD+P   E+Y+HRIGRTGRAG+ G +FT V   + ++++ IE 
Sbjct: 298 DVAARGLDISGVSHVFNFDLPQDPESYVHRIGRTGRAGQKGISFTFVTPREREYLELIED 357

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPL 422
             + K+      L    P +     A++  A       QK  G     K +  +++   L
Sbjct: 358 TTKSKM------LKQHVPSIGDAKDARYRQA------AQKLIGIAESAKTHDLEEAAQKL 405

Query: 423 KESEKISK-----LQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            E     K     L+   +++    +      P  M  K       +
Sbjct: 406 LEEYDAVKLVSAALKMVTKQSSDAPVTLTDESPVRMKKKPMKSSGSR 452


>gi|189499774|ref|YP_001959244.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium
           phaeobacteroides BS1]
 gi|189495215|gb|ACE03763.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeobacteroides
           BS1]
          Length = 591

 Score =  179 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 144/371 (38%), Positives = 223/371 (60%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS +V+ A+   GY  PTP+Q++TIP++L+  DV G AQTGTGKTA+F LP+L+ 
Sbjct: 14  FKDLGLSGQVLDALEKVGYETPTPVQLQTIPIILKGSDVLGQAQTGTGKTAAFALPLLST 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLER 121
           ++   A    P+ L+L PTRELA QVA+ F++Y         L I G   +  Q ++L R
Sbjct: 74  IDLSNAS---PQVLVLTPTRELALQVAEAFQRYAACMEDFHVLPIYGGQDYSGQLRRLRR 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  R  L ++ ++ LV+DEAD ML MGF+  ++ I    P TRQ  
Sbjct: 131 GVHVVVGTPGRVMDHIRRQTLNLDGLKTLVLDEADEMLRMGFVDDVEWILEKTPATRQVA 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+++++  +L++   + + + SST E+    F+     +          ++ 
Sbjct: 191 LFSATMPSEIRRITRKYLRDFTEVAIKSKSSTVESTTQRFLPVSGHHKLDALTRILEIEH 250

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D +   IIF   K   V L   L  +G++  A++G++ Q  R K +  FK+    +++A
Sbjct: 251 YDGV---IIFVRTKTQTVELSEKLRARGYASAALNGDMMQNHREKTVGQFKKSVYNILIA 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   V   ++  +  IE
Sbjct: 308 TDVAARGLDVERISHVINYDIPTDTESYVHRIGRTGRAGRSGEAILFVTPREMSMLRTIE 367

Query: 362 KLIEKKVDWLN 372
           + I K++D + 
Sbjct: 368 RAIRKRIDRME 378


>gi|326561884|gb|EGE12219.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 7169]
 gi|326563318|gb|EGE13585.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 46P47B1]
 gi|326565972|gb|EGE16133.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 103P14B1]
 gi|326568894|gb|EGE18963.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis BC1]
 gi|326571867|gb|EGE21872.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis BC8]
 gi|326575379|gb|EGE25304.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 101P30B1]
 gi|326576534|gb|EGE26442.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis CO72]
          Length = 581

 Score =  179 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 145/442 (32%), Positives = 242/442 (54%), Gaps = 8/442 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLGL+  ++ A+  +GY  PTPIQ K IP  L   D+   AQTG+GKTA+FVLP+L 
Sbjct: 19  QFSDLGLNKPILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLD 78

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL-IGGIPFEAQNKKLE 120
            + +     +  + LIL PTRELA QV D+  +YG       ++  +GG P+  Q + L+
Sbjct: 79  KMSRKPTIEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALK 138

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V+I TPGR++DH   G++ ++ +++L++DEADRMLDMGF   I+ I    P TRQT
Sbjct: 139 KGVQVIIATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQT 198

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT    + K++E+F  NP+++ +   S+  +   +       + +     +   + 
Sbjct: 199 VMSSATWDGAVGKIAESFTVNPEKVSIKVESAHIDESVYYCDDFNHKNN-----ILLQVL 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   +K  +IF   K +   L   L + GF    +HG++ Q  R +I+S+ K G   ++V
Sbjct: 254 NNPKIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLV 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + HV N+D+P + E+Y+HRIGR GRAGR G A  L + +D + ++ I
Sbjct: 314 ATDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQLEHI 373

Query: 361 EKLIEKK--VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            + ++++  V  + G     N  ++  +  +     +N         F+R    + S+  
Sbjct: 374 NRYLKRQMSVSTIEGLEPRRNFGIQSQERRRGRSKSQNRTRQDGRQNFERTDHKFGSRNR 433

Query: 419 HIPLKESEKISKLQQDIQENDA 440
           H    E     K ++      +
Sbjct: 434 HEHRHERSFEGKRERFEDRERS 455


>gi|118580947|ref|YP_902197.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118503657|gb|ABL00140.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
           2379]
          Length = 436

 Score =  179 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 156/449 (34%), Positives = 245/449 (54%), Gaps = 18/449 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL  +++ A+   GY  PTPIQ   IP + +  D+   AQTGTGKTA+F LP++
Sbjct: 1   MSFETLGLRAELLSAIAAQGYTNPTPIQTGAIPAIFEGCDLLAGAQTGTGKTAAFALPIV 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +        + R PR L+L PTRELAAQV++    Y +  +L   ++ GG+  +AQ ++
Sbjct: 61  QMLGENIPPDKRRRPRALVLVPTRELAAQVSEQMNNYARRLSLRSTMIYGGVNIQAQIER 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+++ TPGR+LDH  RG + ++ I+ LV+DEADRMLD+GFI  I  +   +P  R
Sbjct: 121 LHRGVDIVVATPGRLLDHAERGTVNLSRIKFLVLDEADRMLDLGFIDAIHKVAQYLPVKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +  ++++++  L  P+RIEV   +  A+ +            +    +   
Sbjct: 181 QTLLFSATYSQSIKQLADELLNQPRRIEVARRNIAADAVTQAVYQIERSRKR---EMLSF 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L         ++F   +     L   L   G    AIH N  Q  R + L+ FK G  ++
Sbjct: 238 LIRTGRWNQVLVFARTRYGADKLTEELLLDGIKASAIHSNKSQSLRTRTLAEFKRGEFRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV N+D+P   E+Y+HRIGRTGRAG  G A +LV++E+   + 
Sbjct: 298 LVATDVAARGLDIERLPHVVNYDLPQVPEDYVHRIGRTGRAGEDGVALSLVSREEQPLLQ 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           AIEKL++  +            P + +       A+++  + ++S     + K   +++ 
Sbjct: 358 AIEKLLKYAI------------PRQTLAEFPQYAAKRSIEV-KESKQAKEKSKARKTREK 404

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRG 447
                E  + S+ ++ ++E  A   G RG
Sbjct: 405 LTQAPEKTRTSRRKKVVEERPAPKTGRRG 433


>gi|326569194|gb|EGE19255.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis BC7]
          Length = 581

 Score =  179 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 145/442 (32%), Positives = 242/442 (54%), Gaps = 8/442 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLGL+  ++ A+  +GY  PTPIQ K IP  L   D+   AQTG+GKTA+FVLP+L 
Sbjct: 19  QFSDLGLNKPILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLD 78

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL-IGGIPFEAQNKKLE 120
            + +     +  + LIL PTRELA QV D+  +YG       ++  +GG P+  Q + L+
Sbjct: 79  KMSRKPTIEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALK 138

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V+I TPGR++DH   G++ ++ +++L++DEADRMLDMGF   I+ I    P TRQT
Sbjct: 139 KGVQVIIATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQT 198

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT    + K++E+F  NP+++ +   S+  +   +       + +     +   + 
Sbjct: 199 VMSSATWDGAVGKIAESFTVNPEKVSIKVESAHIDESVYYCDDFNHKNN-----ILLQVL 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   +K  +IF   K +   L   L + GF    +HG++ Q  R +I+S+ K G   ++V
Sbjct: 254 NNPKIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLV 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + HV N+D+P + E+Y+HRIGR GRAGR G A  L + +D + ++ I
Sbjct: 314 ATDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQLEHI 373

Query: 361 EKLIEKK--VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            + ++++  V  + G     N  ++  +  +     +N         F+R    + S+  
Sbjct: 374 NRYLKRQMSVSTIEGLEPRRNFGIQSQERRRGRSKSQNRTRQDGRQNFERTDHKFGSRNR 433

Query: 419 HIPLKESEKISKLQQDIQENDA 440
           H    E     K ++      +
Sbjct: 434 HEHRHERSFEGKRERFEDRERS 455


>gi|326563433|gb|EGE13698.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 12P80B1]
          Length = 581

 Score =  179 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 145/442 (32%), Positives = 241/442 (54%), Gaps = 8/442 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLGL+  ++ A+  +GY  PTPIQ K IP  L   D+   AQTG+GKTA+FVLP+L 
Sbjct: 19  QFSDLGLNKPILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLD 78

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL-IGGIPFEAQNKKLE 120
            + +     +  + LIL PTRELA QV D+  +YG       ++  +GG P+  Q + L+
Sbjct: 79  KMSRKPTIEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALK 138

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V+I TPGR++DH   G++ ++ +++L++DEADRMLDMGF   I+ I    P TRQT
Sbjct: 139 KGVQVIIATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQT 198

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT    + K++E F  NP+++ +   S+  +   +       + +     +   + 
Sbjct: 199 VMSSATWDGAVGKIAERFTVNPEKVSIKVESAHIDESVYYCDDFNHKNN-----ILLQVL 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   +K  +IF   K +   L   L + GF    +HG++ Q  R +I+S+ K G   ++V
Sbjct: 254 NNPKIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLV 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + HV N+D+P + E+Y+HRIGR GRAGR G A  L + +D + ++ I
Sbjct: 314 ATDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQLEHI 373

Query: 361 EKLIEKK--VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            + ++++  V  + G     N  ++  +  +     +N         F+R    + S+  
Sbjct: 374 NRYLKRQMSVSTIEGLEPRRNFGIQSQERRRGRSKSQNRTRQDGRQNFERTDHKFGSRNR 433

Query: 419 HIPLKESEKISKLQQDIQENDA 440
           H    E     K ++      +
Sbjct: 434 HEHRHERSFEGKRERFEDRERS 455


>gi|224078085|ref|XP_002191498.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Taeniopygia
           guttata]
          Length = 770

 Score =  179 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 157/464 (33%), Positives = 246/464 (53%), Gaps = 19/464 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F+LP+L
Sbjct: 179 LSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVL 238

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++  +  N+T  L +GG+  + Q   L 
Sbjct: 239 ERLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSNVTTCLAVGGLDVKTQEAALR 298

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            G D+LI TPGR++DH  N     ++++E+L++DEADRMLD  F   ++ I  L    RQ
Sbjct: 299 SGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSHHRQ 358

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMT+E++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 359 TMLFSATMTEEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVTAL 418

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 419 LTRTFQDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQTQRLESLRRFKDEQIDIL 478

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAG+ G++ +LV +E+ K +  
Sbjct: 479 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGKAGRSVSLVGEEERKMLKE 538

Query: 360 IEKL-----------------IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K                    +K++ L  D+ ++     +    Q + A+ N    Q 
Sbjct: 539 IVKTAKTPVKARILPQDVILKFREKIENLEKDIYAVLCLEREEREMQQSEAQINKAKKQL 598

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFR 446
            TG      + S ++S    +E  K  KL + +QE D    G +
Sbjct: 599 ETGKKE-AGSESLERSWFQTREERKKEKLAKALQEFDLALRGKK 641


>gi|303249337|ref|ZP_07335567.1| DEAD/DEAH box helicase domain protein [Desulfovibrio fructosovorans
           JJ]
 gi|302489269|gb|EFL49229.1| DEAD/DEAH box helicase domain protein [Desulfovibrio fructosovorans
           JJ]
          Length = 498

 Score =  179 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 154/464 (33%), Positives = 220/464 (47%), Gaps = 12/464 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F    L P +   +   GY  PTPIQ + IP V    D+ G+AQTGTGKTA+F+LP++
Sbjct: 21  LSFDSFCLHPTICANIARIGYETPTPIQAEAIPHVADGRDIMGLAQTGTGKTAAFLLPII 80

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   +   R  R LIL PTRELA Q+       G+   L  A++ GG+    Q + L 
Sbjct: 81  HRLMTTKPEKRGVRALILAPTRELAEQIYRAGVDLGRGTRLRAAVIYGGVGMFPQVRALR 140

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++  PGR+LDH N+G +  + +E LV+DEAD M DMGF+P ++ I + VP  RQT
Sbjct: 141 QGLDIVVACPGRLLDHMNQGNVRFDALETLVLDEADHMFDMGFLPDLRRILAAVPEKRQT 200

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +               V               A Y   S +   L   L 
Sbjct: 201 LLFSATMPAAIAG----LAGETLTDPVTVRIGHLAPAATVEHAIYPVSSAQKTPLLLHLL 256

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   ++ I+F   K    NL   L + G     + GN+ QR R   +  F+ GT Q++V
Sbjct: 257 GEAAKESVIVFTRTKHRAKNLAQQLCRAGHKATCLQGNLSQRQRQIAMDGFRRGTFQVLV 316

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV N+D+P+  E Y HRIGRTGRA R G+A T V  ED+  + AI
Sbjct: 317 ATDIAARGIDVSQVAHVVNYDIPDTPEAYTHRIGRTGRAERDGQAHTFVTGEDMSMVRAI 376

Query: 361 EKLIEK-----KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           E+ ++K      V+    D      P                   + + G  R+     S
Sbjct: 377 ERHMKKPLPRRSVEGFEPDPEEFRRPSAPSRAPFRGRQGGFGGASRHAGGPRRQGDRPRS 436

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRG 459
           ++ +     +E     + D Q       G  G    F      G
Sbjct: 437 ERGYDGRGNAEH---PRDDRQRAARPHQGANGGQRRFGYEAPAG 477


>gi|254566967|ref|XP_002490594.1| Nucleolar protein required for maturation of 18S rRNA [Pichia
           pastoris GS115]
 gi|238030390|emb|CAY68313.1| Nucleolar protein required for maturation of 18S rRNA [Pichia
           pastoris GS115]
 gi|328350981|emb|CCA37381.1| DEAD-box protein, putative RNA helicase similar to S. cerevisiae
           FAL1 (YDR021W) involved in rRNA processing [Pichia
           pastoris CBS 7435]
          Length = 396

 Score =  179 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 128/377 (33%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L   ++  +   G+  P+ IQ + I  +L   D    AQ+GTGKTA+F + ML 
Sbjct: 24  SFEEMNLKEDLLRGIYGYGFEAPSAIQSRAIMQILTGKDTIAQAQSGTGKTATFSIGMLN 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    + +  + ++L PTRELA Q+ +  +  G   N+     IGG       KKL++
Sbjct: 84  VVDT---KKKDTQAIVLSPTRELAVQINNVIQNLGDYMNIHTYACIGGTSVGEDLKKLQK 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L + N+++LV+DEAD ++  GF   I +I   +P + Q +
Sbjct: 141 GQHIVSGTPGRVCDMIKRRNLNVRNVKMLVLDEADELMTKGFQEQIYDIYKTLPPSTQVV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+T E+  ++  F+ +P +I V     + E I   ++    +  K   L       
Sbjct: 201 VVSATLTKEVLVMTNKFMNDPVKILVKRDEVSLEGIRQFYIQCEKEEWKFDTLCDL--YD 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN KK V  L   L K  F+V ++HG++ Q  R +I++ F+ G  +++++
Sbjct: 259 SLTVTQAVIFCNTKKKVDWLTEHLRKANFTVVSMHGDMKQEDRDRIMNEFRLGNSRVLIS 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A  LV +EDI  + AIE
Sbjct: 319 TDVWARGIDVQQVSLVINYDIPFAKENYIHRIGRSGRFGRKGMAVNLVTEEDIGELHAIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           K   KK++ +  + S L
Sbjct: 379 KYYSKKIEEMPANFSDL 395


>gi|291326441|ref|ZP_06124507.2| ATP-dependent RNA helicase RhlE [Providencia rettgeri DSM 1131]
 gi|291314194|gb|EFE54647.1| ATP-dependent RNA helicase RhlE [Providencia rettgeri DSM 1131]
          Length = 442

 Score =  179 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 166/444 (37%), Positives = 254/444 (57%), Gaps = 7/444 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L+ +++ A+ + GY  PTPIQ + IP VL  +D+   AQTGTGKTA F LP+L 
Sbjct: 3   TFSDLALNEEILLAINELGYESPTPIQQQAIPAVLAGNDLLASAQTGTGKTAGFTLPILQ 62

Query: 62  I---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 +     +  R LIL PTRELAAQVA+N ++Y ++  +   ++ GG+    Q  K
Sbjct: 63  KLITTPRSGKDRKPIRALILTPTRELAAQVAENVKEYSRHLRIRSFVVFGGVSINPQMMK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+LI TPGR+LD  ++  + ++ +E+ V+DEADRMLDMGFI  I+ + + +P  R
Sbjct: 123 LRGGVDILIATPGRLLDLEHQNAVDLSQVEVFVLDEADRMLDMGFIHDIRRVINKLPKKR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +DE+++++   L NP  IEV   +S +E +       +    K+ A L   
Sbjct: 183 QNLLFSATFSDEIKQLANKLLNNPVTIEVAPRNSASEQV---AQYVHLVDKKRKAELLSF 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  ++  +  ++F   K     L   L K G    AIHGN  Q +R + L++FK G I++
Sbjct: 240 MIGRENWQQVLVFTRTKHGANRLAEHLNKDGVKAAAIHGNKSQGARTRALADFKSGDIRV 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + +V NF++PN AE+Y+HRIGRTGRA   G A +LV  ++ K + 
Sbjct: 300 LVATDIAARGLDIEQLPYVVNFELPNVAEDYVHRIGRTGRAEATGMAVSLVCIDEAKLLK 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEKL++K +  +  +    +P + K +  Q    R       ++ G   R+ N  S K 
Sbjct: 360 DIEKLLKKSIPLMAIEGYEPDPSI-KAEPIQKTPQRNERRSGDRNQGKPPRRSNSPSSKP 418

Query: 419 HIPLKESEKISKLQQDIQENDADS 442
                 S      Q+ +++  +DS
Sbjct: 419 SSGKGASSPWKNAQKKVKQGRSDS 442


>gi|193212281|ref|YP_001998234.1| DEAD/DEAH box helicase domain-containing protein [Chlorobaculum
           parvum NCIB 8327]
 gi|193085758|gb|ACF11034.1| DEAD/DEAH box helicase domain protein [Chlorobaculum parvum NCIB
           8327]
          Length = 647

 Score =  179 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 142/373 (38%), Positives = 220/373 (58%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F  L L+  ++ A+   GY  PTPIQ  TIPL+L+  DV G AQTGTGKTA+F LP L
Sbjct: 17  LNFRSLQLAEPLLQALEAVGYETPTPIQANTIPLLLEGRDVLGQAQTGTGKTAAFALPTL 76

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + ++     +  P+ L+L PTRELA QVA+ F  Y +       L I  G  +  Q + L
Sbjct: 77  SNIDLS---LSDPQVLVLAPTRELAIQVAEAFHTYAEFMPDFHVLPIYGGQDYGVQIRML 133

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGR++DH  +G L ++ ++ LV+DEAD ML MGFI  ++ I    P +RQ
Sbjct: 134 KRGVHVVVGTPGRVMDHMRKGTLNLDGLKCLVLDEADEMLRMGFIDDVEWILDQTPESRQ 193

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   + +++  +L+ P  I +   ++T ETI   +      +          +
Sbjct: 194 VALFSATMPQPILRIARKYLKAPAEITIQAKTTTVETIRQRYWMVGGHHKLDALTRILEV 253

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D +   IIF   K   VNL   L+ +G+   A++G++ Q +R + +   K+GT+ ++
Sbjct: 254 EPFDGI---IIFVRTKTETVNLAEKLQARGYLAAALNGDMVQSARERTIEQLKDGTLNIV 310

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   V+  +   + A
Sbjct: 311 IATDVAARGLDVDRISHVINYDIPTDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLFA 370

Query: 360 IEKLIEKKVDWLN 372
           IE+   K++D + 
Sbjct: 371 IERATRKRIDKME 383


>gi|307824650|ref|ZP_07654874.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307734304|gb|EFO05157.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 596

 Score =  179 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 156/433 (36%), Positives = 250/433 (57%), Gaps = 10/433 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L   V+ A+ D GY  P+PIQ +TIPL+LQ  DV G AQTGTGKTA+F LP+L+
Sbjct: 10  SFSDLALIEPVLRALKDVGYETPSPIQAQTIPLLLQGKDVLGQAQTGTGKTAAFALPILS 69

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++    + + P+ L+L PTRELA QVA+ F++Y  +      L I  G  +  Q ++L+
Sbjct: 70  RIDL---KQKDPQVLVLAPTRELAIQVAEAFQRYAAHLKGFHVLPIYGGQDYTTQLRQLK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  +G L +  +  LV+DEAD ML MGFI  ++ I   +P  RQ 
Sbjct: 127 RGAHVVVGTPGRVMDHMRKGTLNLKGLGFLVLDEADEMLRMGFIDDVEWILDQIPEKRQI 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++K+++ +L  P+ I +   +++AE I   +      +           +
Sbjct: 187 ALFSATMPSVIRKIAQQYLNEPEHITIKVTTASAENIRQRYWLVSGVHKLDALTRILEAE 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D M   IIF   K + V L   LE +G+S  AI+G++ Q  R + ++N K G + +++
Sbjct: 247 TFDGM---IIFVRTKTSTVELAEKLEARGYSAAAINGDMSQALRERAIANLKNGKLDILI 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A   +A  +   +  I
Sbjct: 304 ATDVAARGLDVDRITHVVNYDIPYDTESYVHRIGRTGRAGRTGDAILFIAPRERNLLANI 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EK  ++KV+ +    + +   +    I++      +    ++ + F +  + Y  + +  
Sbjct: 364 EKATKQKVEEMGLPSTEV---INNKRISRFKQNITDTLAAEELSFFSQLLEQYQQEHNVT 420

Query: 421 PLKESEKISKLQQ 433
            L+ +  ++KL Q
Sbjct: 421 ALEIASALAKLVQ 433


>gi|254490715|ref|ZP_05103899.1| DbpA RNA binding domain family [Methylophaga thiooxidans DMS010]
 gi|224464070|gb|EEF80335.1| DbpA RNA binding domain family [Methylophaga thiooxydans DMS010]
          Length = 605

 Score =  179 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 163/458 (35%), Positives = 250/458 (54%), Gaps = 26/458 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++LG++P +V A+ +AGY  P+PIQ ++I  +L+  D+ G AQTGTGKTA+F LP+L+
Sbjct: 11  SFSELGIAPAIVKAIQEAGYETPSPIQAQSITPLLEGRDLLGQAQTGTGKTAAFSLPLLS 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L     R + P+ L+L PTRELA QVA+  + YG++      L I  G     Q ++L+
Sbjct: 71  RLND---RQKTPQMLVLTPTRELAIQVAEAIQGYGRHIKNFHVLPIYGGQSMGIQLRQLQ 127

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   V++ TPGRILDH  RGKL + N++ LV+DEAD ML MGFI  ++ I    P  RQ 
Sbjct: 128 RNPQVIVGTPGRILDHIRRGKLALENLQSLVLDEADEMLRMGFIDDVETILQETPKDRQV 187

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   + +V++ +L NP  + + + +ST +TI   +      +          ++
Sbjct: 188 ALFSATMPKPIHRVAQRYLNNPVEVHIKSKTSTVDTINQRYWQVTGLHKLDALTRILEVE 247

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M   IIF   K + V+L   LE +G++   ++G+++Q  R K +   K G I ++V
Sbjct: 248 EFDGM---IIFVRTKNSTVDLAEKLEARGYASSPLNGDMNQALREKTIEKMKAGKIDILV 304

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   VA  + + + AI
Sbjct: 305 ATDVAARGLDIQRMSHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLGAI 364

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ---- 416
           EK  ++ +  +    S     +    +             Q    F++   +Y  +    
Sbjct: 365 EKATKQTITRMQLPSSE---DIADRRVMSFKQQMTETIESQDLAFFEKLITSYQEEHNAD 421

Query: 417 ------------KSHIPLKESEKISKLQQDIQENDADS 442
                       + H PLK    +S+ +Q  +  D DS
Sbjct: 422 PVEVAAALAFLVQKHRPLKPVSHVSERKQPRERADRDS 459


>gi|91794376|ref|YP_564027.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91716378|gb|ABE56304.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 496

 Score =  179 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 177/458 (38%), Positives = 260/458 (56%), Gaps = 13/458 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ A+   GY  PT IQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSSLGLSAALLKAIAKQGYDTPTAIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            IL KG+  +    R L+L PTRELAAQVAD+ E YG N  L  A++ GG+    Q   L
Sbjct: 61  EILSKGKPAQRGQVRALVLTPTRELAAQVADSVETYGHNLPLKSAVVFGGVSIVPQIAAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G D+L+ TPGR+LD  N+  L  + +EILV+DEADRMLDMGFI  I+ + +++P  RQ
Sbjct: 121 KQGVDILVATPGRLLDLCNQRALSFSTLEILVLDEADRMLDMGFIRDIRKVLAMLPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +D+++++++  + NP  I V   ++TA T+                +     
Sbjct: 181 NLMFSATFSDDIRELAKGLVNNPVEISVTPRNATANTVTQWVTPVGQSDKTSVLIDL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  ++F   K     +  +LE       AIHGN  Q +R K L++FK G +Q+M
Sbjct: 238 IKDNNWQQVLVFSRTKHGANRIAKNLEAASIKAAAIHGNKSQGARTKALADFKAGKVQVM 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V NFD+PN +E+Y+HRIGRTGRAG  G+A +LVA E++K +  
Sbjct: 298 VATDIAARGIDIDQLPFVVNFDLPNVSEDYVHRIGRTGRAGASGQAVSLVADEEVKLLHD 357

Query: 360 IEKLIEKKVDW--LNGDLS--SLNPP-LEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           IE+LI + +D   + G     SL  P L+    + H H  +++   Q  +    ++ N +
Sbjct: 358 IERLIGRVIDRKAIPGHEPRHSLPEPNLKGRTASNHGHGARSS---QAKSQPQHKQPNPN 414

Query: 415 SQKSHIPLKESEKISKLQQDI-QENDADSLGFRGNMPA 451
             K      + +   ++ Q I  E        R   PA
Sbjct: 415 RPKHAQHANDRKANDRVAQSIGLEEKPAKRPRRAPKPA 452


>gi|168185061|ref|ZP_02619725.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum Bf]
 gi|226949024|ref|YP_002804115.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A2 str.
           Kyoto]
 gi|237795191|ref|YP_002862743.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum Ba4 str.
           657]
 gi|182671882|gb|EDT83843.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum Bf]
 gi|226843804|gb|ACO86470.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A2 str.
           Kyoto]
 gi|229262477|gb|ACQ53510.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum Ba4 str.
           657]
          Length = 481

 Score =  179 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 136/433 (31%), Positives = 238/433 (54%), Gaps = 18/433 (4%)

Query: 1   MD---FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           M+   F +  LS +++ ++   GY  P+ +Q + IPL+L+  D+   ++TG+GKTA+F +
Sbjct: 1   MNKLGFENYELSDEILKSLGRLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSI 60

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           P+   +E      + P+ L+L PTRELA Q+ +          L    + G  P   Q +
Sbjct: 61  PICEKIEL---EEKDPQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L++   +++ TPGR LDH  R  L +  I+  V+DEAD ML+MGFI  ++ +   +P  
Sbjct: 118 ELKQRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKN 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R T+LFSAT+ ++++ + + ++ NP+ I +N  + T           Y    K    L Q
Sbjct: 178 RVTMLFSATIPEKIENLCKKYMNNPQNININPENITT---GTINQCYYEVEDKDKFSLLQ 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  ++ + N IIFCN ++ V  +   ++K+GF+   +HG ++Q+ R++ +  FK+G  Q
Sbjct: 235 KIIYKEVVDNSIIFCNTREKVDEVLKHMKKKGFNAIGLHGGMEQKDRLETMKKFKQGEFQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +V +D+AARG+ I ++ HV N+++P   E+Y+HRIGRTGRAG+ G A T +    ++ +
Sbjct: 295 FLVCTDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFL 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK-NNPIPQKSTGFDRRKKNYSSQ 416
             IE  IEK++           P LE++D  +        N I  K    ++++K+ +  
Sbjct: 355 KDIEDYIEKEIPKRK------EPSLEEVDKGKKVFEENIKNRIKTKVPKNNKKQKDIT-- 406

Query: 417 KSHIPLKESEKIS 429
           K +I     +KI 
Sbjct: 407 KIYISAGRKKKIR 419


>gi|168180353|ref|ZP_02615017.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum NCTC 2916]
 gi|182668688|gb|EDT80666.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum NCTC 2916]
          Length = 481

 Score =  179 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 136/433 (31%), Positives = 238/433 (54%), Gaps = 18/433 (4%)

Query: 1   MD---FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           M+   F +  LS +++ ++   GY  P+ +Q + IPL+L+  D+   ++TG+GKTA+F +
Sbjct: 1   MNKLGFENYELSDEILKSLGRLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSI 60

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           P+   +E      + P+ L+L PTRELA Q+ +          L    + G  P   Q +
Sbjct: 61  PICEKIEL---EEKDPQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L++   +++ TPGR LDH  R  L +  I+  V+DEAD ML+MGFI  ++ +   +P  
Sbjct: 118 ELKQRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKN 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R T+LFSAT+ ++++ + + ++ NP+ I +N  + T           Y    K    L Q
Sbjct: 178 RVTMLFSATIPEKIENLCKKYMNNPQNININPENITT---GTINQCYYEVEDKDKFSLLQ 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  ++ + N IIFCN ++ V  +   ++K+GF+   +HG ++Q+ R++ +  FK+G  Q
Sbjct: 235 KIIYKEVVDNSIIFCNTREKVDEVLKHMKKKGFNAIGLHGGMEQKDRLETMKKFKQGEFQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +V +D+AARG+ I ++ HV N+++P   E+Y+HRIGRTGRAG+ G A T +    ++ +
Sbjct: 295 FLVCTDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFL 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK-NNPIPQKSTGFDRRKKNYSSQ 416
             IE  IEK++           P LE++D  +        N I  K    ++++K+ +  
Sbjct: 355 KDIEDYIEKEIPKRK------EPSLEEVDKGKKVFEENIKNRIKTKVPKNNKKQKDIT-- 406

Query: 417 KSHIPLKESEKIS 429
           K +I     +KI 
Sbjct: 407 KIYISAGRKKKIR 419


>gi|325577637|ref|ZP_08147912.1| ATP-dependent RNA helicase DeaD [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160382|gb|EGC72508.1| ATP-dependent RNA helicase DeaD [Haemophilus parainfluenzae ATCC
           33392]
          Length = 612

 Score =  179 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 136/373 (36%), Positives = 221/373 (59%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ AV D G+  P+PIQ   IP +L+  DV G+AQTG+GKTA+F LP+L
Sbjct: 5   ITFNDLGLPEFILKAVSDLGFETPSPIQQACIPALLEGRDVLGMAQTGSGKTAAFSLPLL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E + K       + +  G  ++ Q + L
Sbjct: 65  AKIDPA---AKHPQLLVMAPTRELAIQVADACEHFMKYAKGINIVTLYGGQRYDIQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH +R  L ++ ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 122 KQGAQVVVGTPGRILDHIHRNTLNLSELKAIVLDEADEMLRMGFIDDVETVMAELPEEHQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+ NP+ +++   +  A  IE            +        
Sbjct: 182 TALFSATMPEPIRRITKRFMNNPQEVKIKVNNDNAPDIEQNCWYVQGFRKNEA---LLRF 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 239 LEVEEFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDIV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 299 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 358

Query: 360 IEKLIEKKVDWLN 372
           IE L++K ++ + 
Sbjct: 359 IEHLMKKPINEVE 371


>gi|225717006|gb|ACO14349.1| Eukaryotic initiation factor 4A-III [Esox lucius]
          Length = 406

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 34  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ 93

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 94  CLDI---QVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDY 150

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q  
Sbjct: 151 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVC 210

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 211 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 268

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 269 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 328

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 329 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 388

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 389 QYYSTQIDEMPMNVADL 405


>gi|251764758|sp|B7ZTW1|IF4A3_XENTR RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|213624377|gb|AAI71014.1| hypothetical protein LOC100135173 [Xenopus (Silurana) tropicalis]
          Length = 415

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 43  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ 102

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 103 CLDI---QVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDY 159

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q  
Sbjct: 160 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVC 219

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 220 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 277

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 278 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 337

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 338 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 397

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 398 QYYSTQIDEMPMNVADL 414


>gi|166157858|ref|NP_001107349.1| eukaryotic initiation factor 4A-III [Xenopus (Silurana) tropicalis]
 gi|163916017|gb|AAI57178.1| LOC100135173 protein [Xenopus (Silurana) tropicalis]
          Length = 415

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 43  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ 102

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 103 CLDI---QVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDY 159

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q  
Sbjct: 160 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVC 219

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 220 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 277

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 278 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 337

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 338 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 397

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 398 QYYSTQIDEMPMNVADL 414


>gi|326385724|ref|ZP_08207353.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209703|gb|EGD60491.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 487

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 162/441 (36%), Positives = 241/441 (54%), Gaps = 16/441 (3%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M  F +LGL+  ++ A+   GY  PTPIQ ++IP +L+  D+ GIAQTGTGKTA+F LP 
Sbjct: 1   MSYFTELGLAEPILRALATKGYNDPTPIQRQSIPALLEGRDLLGIAQTGTGKTAAFALPS 60

Query: 60  LTI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L     +    +    R L+L PTRELAAQ+A+N   Y +N NL V  + GG+P   Q K
Sbjct: 61  LHRLAADPKPKKPASCRMLVLSPTRELAAQIAENMRGYARNLNLQVDCVFGGVPIGKQAK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G D+L+ TPGR+LD  +   L +  +EI V+DEAD+M+D+GFI  ++ + +L+P  
Sbjct: 121 RLVPGTDILVATPGRLLDLIDSRALTLGRVEIFVLDEADQMMDLGFIHSLKRVAALLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK-CALLQ 236
           RQ+L FSATM   ++ +   F+ NP R+EV   S+TAE +E           +    L  
Sbjct: 181 RQSLFFSATMPKSIEDLGRQFIHNPVRVEVAPQSTTAERVEQYVTFLNQMEKQALLTLRI 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + + +  ++  GI+F   K     +   L   G    AIHGN  Q  R   L  F++G+ 
Sbjct: 241 RAMLADKSLDRGIVFTRTKHGADRVARHLGVAGIEARAIHGNKTQAQRTAALEAFRQGSC 300

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+D+  V HVFNF++PN  E Y+HRIGRT RAG  G A +  A ++  +
Sbjct: 301 PILVATDIAARGIDVSGVSHVFNFELPNVPEQYVHRIGRTARAGADGVAISFCAPDEKPY 360

Query: 357 IDAIEKLIEKKVDWLN------GDLSSLN-----PPLEKIDIAQHNHARKNNPIPQKSTG 405
           +  IE+L   K   +        + + L      P  E    A+H+  R+N P       
Sbjct: 361 LRDIERLTGVKPTPMPLPDDFLAEAARLPTPPRRPAQENEGGARHD-GRRNGPGRGDRPQ 419

Query: 406 FDRRKKNYSSQKSHIPLKESE 426
            DR + + S      P ++  
Sbjct: 420 GDRARSDRSQGDRQRPRRDER 440


>gi|238028205|ref|YP_002912436.1| putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
 gi|237877399|gb|ACR29732.1| Putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
          Length = 480

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 173/470 (36%), Positives = 251/470 (53%), Gaps = 17/470 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+P ++ A+ D GY KPTPIQ K IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAPDILKAIADQGYTKPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHSYAKHTALRSAVVFGGVDMNPQM 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  +++LV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L NP+ IEV   ++TA  +            +   +  
Sbjct: 192 ARQTLLFSATFSPEIKKLAATYLTNPQTIEVARSNATATNVTQIVYDIAEGDKQAAVVKL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                   +K  I+FCN K     L   LE+ G    AIHG+  Q  RM+ L  FK G +
Sbjct: 252 ---IRDRALKQVIVFCNSKIGASRLARLLERDGVVATAIHGDRSQNERMQALEAFKRGEV 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  IEKLI++ +      + +      +        +R     P+++ G +R   ++S +
Sbjct: 369 LADIEKLIKRDLPLQPLAIEAPVRMRREHGERSERGSRDEARAPRRAHGGERGHHHHSRR 428

Query: 417 ---------KSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
                    K + P   + +  +  +  Q            +  F +P+ 
Sbjct: 429 EAPVDEFFLKPYEPSPSARQPEEASKPAQTEKKSKQPLAALLGGFGMPRR 478


>gi|291277508|ref|YP_003517280.1| DEAD box helicase family protein [Helicobacter mustelae 12198]
 gi|290964702|emb|CBG40557.1| DEAD box helicase family protein [Helicobacter mustelae 12198]
          Length = 513

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 142/367 (38%), Positives = 218/367 (59%), Gaps = 6/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  V+  VLDAG+  PTPIQ + IP +LQ  DV   AQTGTGKTA+F LP+L +
Sbjct: 19  FENLGLSKTVLKGVLDAGFRMPTPIQEQAIPAILQERDVIAQAQTGTGKTAAFTLPILEM 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L       +    LI+ PTREL  QV+D   K G+  N+    + GG   + Q + L + 
Sbjct: 79  LHHN----QSIEALIITPTRELTMQVSDEIYKLGRPKNIKTVCVYGGQSIKRQCELLAKN 134

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH   G+L       +V+DE+D MLDMGF+  I+ I + +P   Q LL
Sbjct: 135 PQIMVATPGRLLDHLKSGRLDNFTPRFVVLDESDEMLDMGFLDDIEEIFNYLPNNIQVLL 194

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++K+++  L NP  I++   ++        +     +  ++ AL++  +   
Sbjct: 195 FSATMPEAIKKLAQRILHNPIHIKITPTANMTNLDVTQYYCVIGEGERQEALMR--ILDT 252

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           + +   IIF   KK    L + LE +G+    +HG+++QR R   + +FK+   +++VA+
Sbjct: 253 ENIYKSIIFTRTKKEADGLYNFLEARGYKAGTLHGDMEQRDRRAAILDFKKCHYKILVAT 312

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI DV HVFN+ +P  +E Y+HRIGRTGRAG+ GKA T V   + K +  I++
Sbjct: 313 DVASRGLDISDVSHVFNYHIPTNSEVYVHRIGRTGRAGKKGKAITFVTPLEFKDLKKIQE 372

Query: 363 LIEKKVD 369
            +  K++
Sbjct: 373 DVGSKLE 379


>gi|300727714|ref|ZP_07061100.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           bryantii B14]
 gi|299775002|gb|EFI71608.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           bryantii B14]
          Length = 555

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 144/447 (32%), Positives = 249/447 (55%), Gaps = 15/447 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  +   TPIQ KTIP +L  HDV G+AQTGTGKTA+++LP+L
Sbjct: 1   MRFENLDLNDNVLDALYDMRFDSCTPIQEKTIPEILNGHDVLGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP----FEAQN 116
           + L+ G         +++ PTRELA Q+    + +G       ++ + G      ++ + 
Sbjct: 61  SKLDDGGYPEGAINCVVMSPTRELAQQIDQAMQGFGYYLQGVSSIAVYGGNDGNRYDQEV 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I+ I   +P 
Sbjct: 121 KSLKLGADVVIATPGRLISHISLGNVDLSKVSFFILDEADRMLDMGFADDIKAIAKELPQ 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T QT++FSATM ++++ +++  L+NP  I++       +       + Y  Y  +   + 
Sbjct: 181 TCQTIMFSATMPEKIEDLAKTLLKNPIEIKLAVSKPAEKI----KQSAYICYETQKLGII 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + +     +K  I+FC  K  V  +  +L+++  +   +H ++ Q  R  I+  FK G +
Sbjct: 237 KDIFKAGDLKRVIVFCGSKTKVKQVNSALQRKHINSGEMHSDLTQEERNDIMYKFKAGQL 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ +RG+DI D+  V N+DVP+  E+Y+HRIGRT RA R G A TLV++ED  +
Sbjct: 297 DVLVATDIVSRGIDIDDITMVINYDVPHDTEDYVHRIGRTARADRDGVAITLVSEEDQFY 356

Query: 357 IDAIEKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
               EK +EK++    L  +L       ++    ++N++ KN     ++    + KK + 
Sbjct: 357 FQQTEKFLEKEIQKNKLPENLGDGPEYRKQGKPNKNNNSAKNRRRKDRNQTSHKDKKQHC 416

Query: 415 SQKS-----HIPLKESEKISKLQQDIQ 436
            QK+          ++++ + + +D Q
Sbjct: 417 HQKNNDITERTSNPQNKRTNPMYRDHQ 443


>gi|256852006|ref|ZP_05557393.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           27-2-CHN]
 gi|260661425|ref|ZP_05862338.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           115-3-CHN]
 gi|282931887|ref|ZP_06337366.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
 gi|297205122|ref|ZP_06922518.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           jensenii JV-V16]
 gi|256615418|gb|EEU20608.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           27-2-CHN]
 gi|260547880|gb|EEX23857.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           115-3-CHN]
 gi|281303998|gb|EFA96121.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
 gi|297149700|gb|EFH29997.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           jensenii JV-V16]
          Length = 484

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 145/381 (38%), Positives = 219/381 (57%), Gaps = 13/381 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+  ++ A+  +G+ + TPIQ KTIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFTELGLNDALLKAIKRSGFEEATPIQEKTIPLALAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +    + L++EPTRELA Q  +   + G++    V ++ GG     Q + L+
Sbjct: 61  QKI---NNKEHFIQALVIEPTRELAIQTQEELYRLGRDEKAKVQVVYGGADISRQIRALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGRILDH  R  + ++ I+ +V+DEAD MLDMGFI  I++I         T
Sbjct: 118 QTPAILVGTPGRILDHLKRKTVKLDKIKTVVLDEADEMLDMGFIQDIESILDFAQNREHT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + ++ E F++ P+ +++ +   TA+ I+  FV                  
Sbjct: 178 LLFSATMPKPILRIGEKFMKEPEIVQIKSKELTADLIDQYFVRAKEAEKFDIMCRL---I 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F   K+ V  L   L  +G++   IHG++ Q  RM +L  FK G + ++V
Sbjct: 235 DVQAPDLAVVFGRTKRRVDELTRGLVARGYNAAGIHGDLSQAKRMSVLKRFKNGKLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKNGISVTFVTPNEIGYMRTI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPP 381
           E L +KK       +S L PP
Sbjct: 355 ENLTKKK-------MSPLRPP 368


>gi|119775819|ref|YP_928559.1| DEAD-box ATP dependent DNA helicase [Shewanella amazonensis SB2B]
 gi|119768319|gb|ABM00890.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis
           SB2B]
          Length = 533

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 163/445 (36%), Positives = 254/445 (57%), Gaps = 8/445 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M FA LGLS  ++ A+   GY  P+PIQ + IP+VL+  D+   AQTGTGKTA F LP +
Sbjct: 1   MSFASLGLSAPILKALDHKGYKTPSPIQAQAIPVVLEGRDLLAAAQTGTGKTAGFTLPLL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +  +A  +  R LIL PTRELAAQ+ADN   Y K   L   ++ GG+    Q   L
Sbjct: 61  ELLSQTQKAGPKQVRALILTPTRELAAQIADNITAYSKYLPLKSTVVFGGVGIGPQITTL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD   +  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 RRGIDILVATPGRLLDLHQQNAVSFHGLEILVLDEADRMLDMGFIHDIKRILKLLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++ ++   L N   + V   +S AE+++   V            L   L
Sbjct: 181 NLLFSATFSPEIRTLAHGLLHNAAEVSVTPRNSAAESVKQWIVPVDKNQK---PALLAEL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  ++FC  K     L   ++ +G    AIHGN  Q +R + L++FK G I+++
Sbjct: 238 TRFYRWQQVLVFCRTKHGANRLVRQMDAEGIKAAAIHGNKSQNARTQALADFKRGAIRML 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI ++ +V NF++P+  E+Y+HRIGRTGRAG  G+A +LV  E+ K +  
Sbjct: 298 IATDIAARGIDISELPNVVNFELPHVPEDYVHRIGRTGRAGASGEAASLVCNEEAKQLRD 357

Query: 360 IEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           IE+LI++ +   +++  +     PP E    ++   +++      KS G   + ++ ++Q
Sbjct: 358 IERLIKQSLPRKEFVGFEPVHGLPPSENQGKSKPGGSKQGAKPGNKSQGRKPQGQSRNAQ 417

Query: 417 KSHIPLKESEKISKLQQDIQENDAD 441
                   +++  + QQD   + ++
Sbjct: 418 PKQRQGSRAQE-ERSQQDKNPSRSE 441


>gi|150002994|ref|YP_001297738.1| ATP-dependent RNA helicase DeaD [Bacteroides vulgatus ATCC 8482]
 gi|149931418|gb|ABR38116.1| ATP-dependent RNA helicase DeaD [Bacteroides vulgatus ATCC 8482]
          Length = 434

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 164/440 (37%), Positives = 253/440 (57%), Gaps = 15/440 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY  PTPIQ + IP++L+  D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   +    + LIL PTRELA Q+ +NF++Y     +  A++ GG+P +AQ   L+
Sbjct: 61  QRLYQSDHKKG-IKALILTPTRELAIQIGENFDQYAGYTGVKHAVIFGGVPQKAQVDALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  VLI TPGR+LD  ++G + +  +E  V+DEADRMLDMGFI  I+ +  L+P  RQT
Sbjct: 120 RGVQVLIATPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++++ L NP++IEV   SST +TI     + Y    K+   L   L 
Sbjct: 180 LFFSATMPSEIEKLADSMLTNPEKIEVTPVSSTVDTI---RQSVYFVEKKEKKDLLLHLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +++ +IF   K     L   L K      AIHGN  Q +R + L+NFK+ T ++++
Sbjct: 237 KNPEIESVLIFTRTKHGADKLARILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+++PN +E Y+HRIGRTGRAG  G A +    E++ ++  I
Sbjct: 297 ATDIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDI 356

Query: 361 EKLIEKKVDW--------LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           +KLI  ++          + G+ +      E  + A+ N   + +   + +  + RRKK 
Sbjct: 357 QKLIGLQIPVVKDHPWVTVEGEKAQAGKTEELKEKAKANKVYRGS---KSNGDYWRRKKQ 413

Query: 413 YSSQKSHIPLKESEKISKLQ 432
             S++         K S   
Sbjct: 414 AQSKQGQGRQSSDRKASGRP 433


>gi|170016724|ref|YP_001727643.1| putative ATP-dependent RNA helicase [Leuconostoc citreum KM20]
 gi|169803581|gb|ACA82199.1| Putative ATP-dependent RNA helicase [Leuconostoc citreum KM20]
          Length = 522

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 162/421 (38%), Positives = 248/421 (58%), Gaps = 13/421 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+   GYV+ TPIQ KTIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLSQDILDAIATHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    LI+ PTRELA Q A+  +K G++ ++ V ++ GG     Q + L+
Sbjct: 61  EHIDLSNKNIQ---ALIVSPTRELAIQTAEELKKLGRDKHVDVQVVFGGADIRRQIQNLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LDH NR  + ++N++ LV+DEAD ML+MGF+  I++I    P  RQT
Sbjct: 118 SHPQILVGTPGRLLDHINRKTVKIDNVKTLVLDEADEMLNMGFLDDIESIIKNTPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+ NP+ I++     T + +             +       + 
Sbjct: 178 LLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLV---DQYFVRMRENEKFDTMTRIF 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  I+F   K+ V  L   LE +G+    +HG++ Q+ R ++L+ FK   I ++V
Sbjct: 235 DVQAPKLAIVFGRTKRRVEELSRGLEARGYRAAGLHGDLTQQMRSRVLAQFKSHEINILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HV+NFD+P   E+Y+HRIGRTGRAG  G + TLVA  ++ ++ A+
Sbjct: 295 ATDVAARGLDVKDVTHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTLVAPNEMDYLRAV 354

Query: 361 EKLIEKKVDWLNGDLSSLNPP-LEKIDIAQ---HNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           E L +K++  L    +SL    + KI  A    HN  +K + + +  T  D+    YSS+
Sbjct: 355 EDLTKKRMTPLEP--ASLKEARIGKIKNAADEVHNIVKKTD-VSEIQTEVDKLTNQYSSE 411

Query: 417 K 417
           +
Sbjct: 412 E 412


>gi|224068070|ref|XP_002188600.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Taeniopygia
           guttata]
          Length = 1031

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 238/448 (53%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ A+   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 373 TWVQCGISMKILTALKKHGYEKPTPIQTQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFR 432

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 433 HIMDQRALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 492

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     N     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 493 KRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 552

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S     +E        +   K   L 
Sbjct: 553 DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQHV--IVIEEENKFLKLL 610

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT 
Sbjct: 611 ELLGHYQEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTC 670

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 671 KLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARY 730

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     L+G+   + P LEK+     +  +    + +KS+GF  +   +   
Sbjct: 731 AGDIIKALE-----LSGN--PIPPDLEKLWADFKDQQKAEGKLIKKSSGFSGKGFKFDET 783

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +   E +K+ K    +Q++D +   
Sbjct: 784 EQAL-ANERKKLQKAALGLQDSDDEDTA 810


>gi|213511116|ref|NP_001134430.1| eukaryotic initiation factor 4A-III [Salmo salar]
 gi|251764756|sp|B5DG42|IF4A3_SALSA RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|197631985|gb|ACH70716.1| eukaryotic translation initiation factor 4A isoform 3 [Salmo salar]
 gi|209733202|gb|ACI67470.1| Eukaryotic initiation factor 4A-III [Salmo salar]
          Length = 406

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 34  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ 93

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 94  CLDI---QVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHSCIGGTNVGEDIRKLDY 150

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q  
Sbjct: 151 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVC 210

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 211 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 268

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 269 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 328

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 329 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 388

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 389 QYYSTQIDEMPMNVADL 405


>gi|332140113|ref|YP_004425851.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550135|gb|AEA96853.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 589

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 145/373 (38%), Positives = 225/373 (60%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   ++ A+   GY KP+PIQ ++IPL+L+ HD+ G AQTGTGKTA+F LPML
Sbjct: 7   MTFKDLNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPML 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++  + +   P+ L+L PTRELA QVA+ F+ Y         L +  G  ++ Q ++L
Sbjct: 67  ANIDPEQRK---PQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGRI+DH  R  L ++ ++ LV+DEAD ML MGFI  ++ I S  P  RQ
Sbjct: 124 KRGVQVVVGTPGRIIDHIKRKTLDLSELKYLVLDEADEMLRMGFIDDVELILSHAPEERQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM   ++K+++ +L++PK +++ +  STA TI   +      +          +
Sbjct: 184 TALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPHHK---LEALTRI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   V L   L  +G+ V  ++G+I Q +R + +   K+G I ++
Sbjct: 241 MEVEVFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+  V HV N+D+P  +E+Y+HRIGRTGRAGR G A   ++  + + + +
Sbjct: 301 VATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLFS 360

Query: 360 IEKLIEKKVDWLN 372
           IEK  ++ ++ + 
Sbjct: 361 IEKTTKQPIEAMP 373


>gi|94501919|ref|ZP_01308429.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
 gi|94425972|gb|EAT10970.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
          Length = 614

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 153/463 (33%), Positives = 248/463 (53%), Gaps = 14/463 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   ++ A+ + GY +P+PIQ ++IP +L+  DV G+AQTGTGKTA+F LP+L  
Sbjct: 8   FASLGLPFNLLRAIEEQGYEQPSPIQEQSIPHLLEGKDVLGLAQTGTGKTAAFTLPLLAR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
            +     VR P+ L+L PTRELA QVA   E Y K+  N+ VA + GG  F +Q + L++
Sbjct: 68  TQN---EVREPQVLVLAPTRELAQQVAMAVESYSKHESNVKVASIYGGSDFGSQFRALKQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G   ++ TPGR++DH  RG L +  I  +V+DEAD ML MGFI  +  +   VP  RQ  
Sbjct: 125 GPQWVVGTPGRVMDHIRRGTLKLEGIRAVVLDEADEMLRMGFIDDVDWVLDQVPEKRQIA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  +++ V+E  L+ P  I + + ++T E+IE  +         +  L       
Sbjct: 185 LFSATMPKQIKAVAEKHLREPTEIRIKSKTATNESIEQKYWLVKGVDKNQALLRICETSE 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   +      + V +   S    G    A++G++ Q  R + +   K+G + ++VA
Sbjct: 245 FDAMMVFVRTKQATEEVADYMRS---HGLRCEALNGDVAQAQRERAVDRLKKGQVDMLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  IE
Sbjct: 302 TDVAARGLDVERISHVVNYDIPYDAESYVHRIGRTGRAGRSGEAILFVRPRERRMLSTIE 361

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           ++  KK+  +        P  ++++  + +  +       +    +  KK  S   +  P
Sbjct: 362 RVTRKKIQQIE------LPTAKEVNAKRRDQFKVRALEHIEGRDIEIFKKIASEILAEQP 415

Query: 422 LKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
             +  +++     + + +        + P F    +RG+  ++
Sbjct: 416 ALDPIELAAAFAQMSQGNKPLF-MDESEPRFKPETDRGERGER 457


>gi|152979711|ref|YP_001345340.1| DEAD/DEAH box helicase domain-containing protein [Actinobacillus
           succinogenes 130Z]
 gi|150841434|gb|ABR75405.1| DEAD/DEAH box helicase domain protein [Actinobacillus succinogenes
           130Z]
          Length = 615

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ AV + G+  P+PIQ   IP +L+  DV G+AQTG+GKTA+F LP+L
Sbjct: 6   ITFGDLGLPDFILSAVSEMGFESPSPIQHACIPHLLEGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E++ KN   + +  L GG  ++ Q + L
Sbjct: 66  AQIDSDE---KYPQMLVMAPTRELAIQVADACEQFTKNAKGIRIVTLYGGQRYDIQLRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GA V++ TPGRILDH  RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 RQGAQVVVGTPGRILDHIKRGTLDLSALKFIVLDEADEMLRMGFIDDVETVMAELPEQHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+ NP+ + + +   T   I             +        
Sbjct: 183 TALFSATMPEPIRRITKRFMTNPQEVRIQSTQRTNPDIAQSCWYVRGYRKNEA---LLRF 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   L+K GF   A++G++ Q++R + L   + G++ ++
Sbjct: 240 LEVEDFDAAIIFTRTKTGTLDVTELLDKHGFRAAALNGDMTQQAREQTLDRLRNGSLDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G A   V   + + +  
Sbjct: 300 VATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRSGSAILFVEPRERRLLGN 359

Query: 360 IEKLIEKKVDWLN 372
           IE+L++K ++ + 
Sbjct: 360 IERLMKKPIEEVE 372


>gi|307636940|gb|ADN79390.1| cold-shock DEAD-box protein A [Helicobacter pylori 908]
          Length = 491

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 139/392 (35%), Positives = 216/392 (55%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 81  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +   + T   I   F         +  +       
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINKHERAEAIMRLL---D 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 254 TQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ +++       + N  ++ +  A+ +  
Sbjct: 374 KEIDSEIELFEIPTINENQIIKTLHDAKVSEG 405


>gi|254778953|ref|YP_003057058.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter
           pylori B38]
 gi|254000864|emb|CAX28796.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter
           pylori B38]
          Length = 492

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 140/392 (35%), Positives = 216/392 (55%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 81  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +   + T   I   F         +  +       
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL---D 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 254 TQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ +++       + N  ++ +  A+ +  
Sbjct: 374 KEIDSEIELFEIPTINENQIIKTLHDAKVSEG 405


>gi|149926712|ref|ZP_01914972.1| Helicase [Limnobacter sp. MED105]
 gi|149824641|gb|EDM83857.1| Helicase [Limnobacter sp. MED105]
          Length = 539

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 176/453 (38%), Positives = 249/453 (54%), Gaps = 17/453 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FAD  L P +  A+   GY +PTPIQ K IP+V+   DV G AQTGTGKTA F LP+L
Sbjct: 20  VTFADFALHPDIQKAIDAQGYTQPTPIQAKAIPVVMTGVDVMGAAQTGTGKTAGFSLPIL 79

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L         P        IL PTRELA QVA N   Y K   L   ++ GG+    Q
Sbjct: 80  NRLMPLATENTSPARHPVRALILTPTRELADQVAANVHTYAKFTPLRSTVVYGGVDINPQ 139

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L RG +++I TPGR+LDH  +  + +  +++LV+DEADRMLDMGF+P +Q I +L+P
Sbjct: 140 IQTLRRGVELVIATPGRLLDHVQQKSINLGQVQVLVLDEADRMLDMGFLPDLQRIINLLP 199

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            TRQ LLFSAT + E+QK++++F+ +P  IEV   ++T+E I+    A  ++  K+ A+ 
Sbjct: 200 KTRQNLLFSATFSPEIQKLAKSFMVSPTLIEVARRNATSENIKQVIFALDSEEDKRMAVC 259

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L     +   I+F N K     L   LEK+G S  AIHG+  Q  R K L  FK G 
Sbjct: 260 --HLIQSKALSQVIVFSNTKLGTARLARHLEKEGVSSTAIHGDKTQIERTKSLEAFKAGE 317

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGLDI D+  V N+D+P   E+Y+HRIGRTGRAG  G A++ V K D +
Sbjct: 318 VTVLVATDVAARGLDIADLPCVINYDLPTTPEDYVHRIGRTGRAGAKGTAYSFVVKRDER 377

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            +  IEKLI K    + L G +     P E+         R       ++ G     + Y
Sbjct: 378 ALKDIEKLIGKAFVREELEGFVPGARAPREE---RSGREGRSEGRSDGRTEG-----RTY 429

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLGFR 446
             +    P +  ++ +  ++     D    G R
Sbjct: 430 EGRSDRRPARSGDEAAPARERRPSRDMSYQGAR 462


>gi|15644875|ref|NP_207045.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori 26695]
 gi|2313340|gb|AAD07315.1| ATP-dependent RNA helicase, DEAD-box family (deaD) [Helicobacter
           pylori 26695]
          Length = 492

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 140/392 (35%), Positives = 216/392 (55%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 81  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +   + T   I   F         +  +       
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL---D 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 254 TQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ +++       + N  ++ +  A+ +  
Sbjct: 374 KEIDSEIELFEIPTINENQIIKTLHDAKVSEG 405


>gi|307566011|ref|ZP_07628469.1| putative ATP-dependent RNA helicase RhlE [Prevotella amnii CRIS
           21A-A]
 gi|307345199|gb|EFN90578.1| putative ATP-dependent RNA helicase RhlE [Prevotella amnii CRIS
           21A-A]
          Length = 567

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 133/376 (35%), Positives = 217/376 (57%), Gaps = 8/376 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  V+ A+ D  + K TP+Q K IPL+L+  D+  +AQTGTGKTA+++LP+L
Sbjct: 1   MYFDELDLNDDVLDALYDMHFDKCTPVQEKCIPLILKGKDILAVAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP----FEAQN 116
           + L KG         +I+ PTRELA Q+    + +    N    + + G      ++ + 
Sbjct: 61  SKLAKGNYADDAINCVIMSPTRELAQQIDQAIQGFSYYLNGISCVAVYGGNDGNRYDQEI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  GA+++I TPGR++ H + G + ++ +   V+DEADRMLDMGF   I+ I + +P 
Sbjct: 121 KSLSMGANIVIATPGRLISHISLGNVDLSKVSFFVLDEADRMLDMGFSEDIKMIANNLPK 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + QT++FSATM ++++ ++++ L+N + I++       +       + Y  Y  +   + 
Sbjct: 181 SCQTIMFSATMPNKIESLAKSLLKNAEIIKLAVSKPAEKI----QQSAYICYETQKIGII 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + +     +K  IIF   K+ V  +  SL KQ      +H ++DQ  R  ++  FK   I
Sbjct: 237 KEIFKSGNLKRVIIFSGSKQKVKKITASLNKQNIKCGEMHSDLDQAQRDDVMFKFKSSQI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ ARG+DI D+  V N+DVP+  E+Y+HRIGRT RA R G A T V++EDI +
Sbjct: 297 DVLVATDIVARGIDIDDIAMVINYDVPHDVEDYVHRIGRTARADREGNAITFVSEEDIYY 356

Query: 357 IDAIEKLIEKKVDWLN 372
              IE  ++K +D   
Sbjct: 357 FRHIESFLKKTIDKKP 372


>gi|170725067|ref|YP_001759093.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169810414|gb|ACA84998.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 494

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 173/462 (37%), Positives = 267/462 (57%), Gaps = 15/462 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV   GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTSLGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +G+    +  R L+L PTRELAAQVA++ E YGKN  L  A++ GG+    Q  KL
Sbjct: 61  ELLSRGKRAPAKQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVGIGPQISKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD +N+G +    +E+LV+DEADRMLDMGFI  I+ I  ++P  RQ
Sbjct: 121 GKGVDILVATPGRLLDLYNQGAVSFKQLEVLVLDEADRMLDMGFIHDIKKILKILPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +D+++ +++  + NP  I V   ++TA+T+E           K+       L
Sbjct: 181 NLMFSATFSDDIRNLAKGLVNNPVEISVTPRNATAKTVEQYIYPVDQ---KQKTAALIHL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  K  ++F   K     +  +LE  G +  AIHGN  Q +R K L+NFK G ++++
Sbjct: 238 VKQNEWKQVLVFSRTKHGANRIAKNLEASGLTAAAIHGNKSQGARTKALANFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + +V NFD+PN  E+Y+HRIGRTGRAG +G+A +LV+ ++ K +  
Sbjct: 298 VATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGANGQAVSLVSGDESKLLRD 357

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHAR---------KNNPIPQKSTGFDR 408
           IE+LI++ +    + G + +   P   ++  +H   R                +S G  +
Sbjct: 358 IERLIKQNIPRKEVEGFVPTQVLPDNDLNSQKHGQNRGPRNANGRGNGRNGNSQSRGSKQ 417

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMP 450
            + +  ++      +   + S+ + + ++        RG+ P
Sbjct: 418 GRGSGDTRSDSDKNRRPRRNSEGKTEHKDGQRSGEAARGHKP 459


>gi|301154834|emb|CBW14297.1| ATP-dependent RNA helicase [Haemophilus parainfluenzae T3T1]
          Length = 616

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 136/373 (36%), Positives = 219/373 (58%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ AV D G+  P+PIQ   IP +L+  DV G+AQTG+GKTA+F LP+L
Sbjct: 5   ITFNDLGLPEFILKAVSDLGFETPSPIQQACIPALLEGRDVLGMAQTGSGKTAAFSLPIL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E + K       + +  G  ++ Q + L
Sbjct: 65  AKIDPA---AKHPQLLVMAPTRELAIQVADACEHFMKYAKGINIVTLYGGQRYDIQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  R  L ++ ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 122 KQGAQVVVGTPGRILDHIRRNTLDLSELKAIVLDEADEMLRMGFIDDVETVMAELPEEHQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+ NP+ +++   +  A  IE                     
Sbjct: 182 TALFSATMPEPIRRITKRFMNNPQEVKIKVNNDNAPDIEQNCWYVQGFRKNDA---LLRF 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 239 LEVEDFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDIV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 299 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 358

Query: 360 IEKLIEKKVDWLN 372
           IE L++K ++ + 
Sbjct: 359 IEHLMKKPINEVE 371


>gi|170717335|ref|YP_001784445.1| DEAD/DEAH box helicase domain-containing protein [Haemophilus
           somnus 2336]
 gi|168825464|gb|ACA30835.1| DEAD/DEAH box helicase domain protein [Haemophilus somnus 2336]
          Length = 601

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 144/405 (35%), Positives = 235/405 (58%), Gaps = 20/405 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ AV + G+  P+PIQ   IP +L  HDV G+AQTG+GKTA+F LP+L
Sbjct: 6   ITFNDLGLPEFILNAVSEMGFSTPSPIQQACIPHLLNGHDVLGMAQTGSGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E++ K    + +  L GG  ++ Q + L
Sbjct: 66  AKIDTNE---KYPQMLVMAPTRELAIQVADACEQFVKFSKGVRIVTLYGGQRYDIQLRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  RG L ++N++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 KQGAQVVVGTPGRILDHIRRGTLDLSNLQSIVLDEADEMLRMGFIDDVETVMAELPEQHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM   ++++++ F+ NP+ +++ +   TA  I             +        
Sbjct: 183 TALFSATMPAPIKRITKRFMHNPQEVKIQSTQRTAPDITQSCWYVRGFRKNEA---LLRF 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 240 LEVEDFDAAIIFTRTKTATLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V  ++ + +  
Sbjct: 300 VATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRAGRAILFVEPKERRLLGN 359

Query: 360 IEKLIEKKVDWLNGD-------------LSSLNPPLEKIDIAQHN 391
           IE+L++K ++ +                ++ +   LE  D+ Q+ 
Sbjct: 360 IERLMKKAIEEVEMPNHLALQECRRKNFVAKITKQLEHHDLEQYR 404


>gi|113460849|ref|YP_718916.1| ATP-dependent RNA helicase [Haemophilus somnus 129PT]
 gi|112822892|gb|ABI24981.1| ATP-dependent RNA helicase CsdA [Haemophilus somnus 129PT]
          Length = 601

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 144/405 (35%), Positives = 235/405 (58%), Gaps = 20/405 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ AV + G+  P+PIQ   IP +L  HDV G+AQTG+GKTA+F LP+L
Sbjct: 6   ITFNDLGLPEFILNAVSEMGFSTPSPIQQACIPHLLNGHDVLGMAQTGSGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E++ K    + +  L GG  ++ Q + L
Sbjct: 66  AKIDTNE---KYPQMLVMAPTRELAIQVADACEQFVKFSKGVRIVTLYGGQRYDIQLRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  RG L ++N++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 KQGAQVVVGTPGRILDHIRRGTLDLSNLQSIVLDEADEMLRMGFIDDVETVMAELPEQHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM   ++++++ F+ NP+ +++ +   TA  I             +        
Sbjct: 183 TALFSATMPAPIKRITKRFMHNPQEVKIQSTQRTAPDITQSCWYVRGFRKNEA---LLRF 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 240 LEVEDFDAAIIFTRTKTATLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V  ++ + +  
Sbjct: 300 VATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRAGRAILFVEPKERRLLGN 359

Query: 360 IEKLIEKKVDWLNGD-------------LSSLNPPLEKIDIAQHN 391
           IE+L++K ++ +                ++ +   LE  D+ Q+ 
Sbjct: 360 IERLMKKAIEEVEMPNHLALQECRRKNFVAKITKQLEHHDLEQYR 404


>gi|325995530|gb|ADZ50935.1| Cold-shock DEAD-box protein A [Helicobacter pylori 2018]
 gi|325997128|gb|ADZ49336.1| ATP dependent RNA helicase [Helicobacter pylori 2017]
          Length = 491

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 139/392 (35%), Positives = 216/392 (55%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 81  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +   + T   I   F         +  +       
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL---D 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 254 TQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ +++       + N  ++ +  A+ +  
Sbjct: 374 KEIDSEIELFEIPTINENQIIKTLHDAKVSEG 405


>gi|315127597|ref|YP_004069600.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. SM9913]
 gi|315016111|gb|ADT69449.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. SM9913]
          Length = 408

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 131/390 (33%), Positives = 198/390 (50%), Gaps = 7/390 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F++  L  K++ A+   GY  PT IQ + IP  LQ  D+   A TGTGKTA+F++P +
Sbjct: 1   MQFSEFDLDDKLLNAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +++  R      R LI+ PTRELA Q+ +  E   K   L + ++ GGI +    +  
Sbjct: 61  QYLMDFPRRDPGFARVLIMTPTRELAYQIHEQCELLAKQTQLKIGVVTGGINYGTHKEIF 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E   D+LI TPGR++++         N+E+L++DEADRMLDMGF   +  I       RQ
Sbjct: 121 ENNNDILIATPGRLMEYLETENFHAENVEMLILDEADRMLDMGFRKEMLRICDEAKNRRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSAT+ +                 +   SS  E  +       A   +    L    
Sbjct: 181 CFLFSATL-EGDSVELFAERILNDPALLEAESSRKEKAKIHQWVHLADDYRHKLELLVNT 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +   +   I+F   ++ +  L   L   G     + G + Q  RMK + NF  G  +++
Sbjct: 240 LNGPDVSKAIVFVKTRERLETLIGELTNNGVKAAWLRGEMPQDKRMKAMENFHSGKTRIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ D+ HV NFD+P  A+ Y+HRIGRTGRAG+ G A +L+   DI  +  
Sbjct: 300 VATDVAARGIDVADISHVINFDMPRTADVYVHRIGRTGRAGKKGIAISLIEAHDIGILYK 359

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEK 384
           +E+ IE+K+       L        PP++K
Sbjct: 360 VERYIEQKLKRRVFKGLEPKHKEAKPPVKK 389


>gi|239996759|ref|ZP_04717283.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126]
          Length = 596

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 145/373 (38%), Positives = 224/373 (60%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   ++ A+   GY KP+PIQ ++IPL+L+ HD+ G AQTGTGKTA+F LPML
Sbjct: 7   MTFKDLNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPML 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++    +   P+ L+L PTRELA QVA+ F+ Y         L +  G  ++ Q ++L
Sbjct: 67  ANIDPEERK---PQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGRI+DH  R  L ++ ++ LV+DEAD ML MGFI  ++ I S  P  RQ
Sbjct: 124 KRGVQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPEERQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM   ++K+++ +L++PK +++ +  STA TI   +      +          +
Sbjct: 184 TALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPHHK---LEALTRI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   V L   L  +G+ V  ++G+I Q +R + +   K+G I ++
Sbjct: 241 MEVEVFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+  V HV N+D+P  +E+Y+HRIGRTGRAGR G A   ++  + + + +
Sbjct: 301 VATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLFS 360

Query: 360 IEKLIEKKVDWLN 372
           IEK  ++ ++ + 
Sbjct: 361 IEKTTKQPIEAMP 373


>gi|332184003|gb|AEE26257.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida 3523]
          Length = 445

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 163/443 (36%), Positives = 255/443 (57%), Gaps = 9/443 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+P +  A+   GY KPTPIQ K IPLVL+  DV   AQTGTGKTA F LP++
Sbjct: 1   MQFSDLGLNPLICSALEKKGYTKPTPIQAKAIPLVLKGSDVMASAQTGTGKTAGFTLPII 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVVFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  L  +++   V+DEADRMLDMGFI  ++ I  L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQNALKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++ +FL NP+ +  +  ++T + I                +     
Sbjct: 181 TLMFSATFSPEIKNLANDFLNNPQSVSADVVNTTVKKITQKIYTLDKSTKINALISL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   ++F   K     +   L   G +  AIHGN  Q +R K L++FK   I ++
Sbjct: 238 IKDQDLHQVLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFKSKEINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+PN AE+Y+HRIGRTGRAG+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQDGLAISLVSADEVESLSN 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE LI   +  + L G  ++ N P+  +  ++   A+K + + +        K N S+ +
Sbjct: 358 IEHLIGHLLPREELEGFEATHNVPITSM--SRKTKAKKIDEV-KIIAAKRANKNNKSTNQ 414

Query: 418 SHIPLKESEKISKLQQDIQENDA 440
                  S+   K++Q I +N +
Sbjct: 415 KKSSNHNSDFAKKIRQKIHQNKS 437


>gi|332673089|gb|AEE69906.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 83]
          Length = 492

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 140/392 (35%), Positives = 216/392 (55%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 81  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +   + T   I   F         +  +       
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL---D 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 254 TQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ +++       + N  ++ +  A+ +  
Sbjct: 374 KEIDSEIELFEIPTINENQIIKTLHDAKVSEG 405


>gi|317180053|dbj|BAJ57839.1| ATP-dependent RNA helicase [Helicobacter pylori F32]
          Length = 492

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 140/392 (35%), Positives = 216/392 (55%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 81  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +   + T   I   F         +  +       
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL---D 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 254 TQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ +++       + N  ++ +  A+ +  
Sbjct: 374 KEIDSEIELFEIPTINENQIIKTLHDAKVSEG 405


>gi|317179357|dbj|BAJ57145.1| ATP-dependent RNA helicase [Helicobacter pylori F30]
          Length = 492

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 140/392 (35%), Positives = 216/392 (55%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 81  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +   + T   I   F         +  +       
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL---D 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 254 TQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ +++       + N  ++ +  A+ +  
Sbjct: 374 KEIDSEIELFEIPTINENQIIKTLHDAKVSEG 405


>gi|317177063|dbj|BAJ54852.1| ATP-dependent RNA helicase [Helicobacter pylori F16]
          Length = 492

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 140/392 (35%), Positives = 216/392 (55%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 81  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +   + T   I   F         +  +       
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL---D 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 254 TQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ +++       + N  ++ +  A+ +  
Sbjct: 374 KEIDSEIELFEIPTINENQIIKTLHDAKVSEG 405


>gi|317012091|gb|ADU82699.1| ATP-dependent RNA helicase [Helicobacter pylori Lithuania75]
          Length = 491

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 140/392 (35%), Positives = 216/392 (55%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 81  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +   + T   I   F         +  +       
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL---D 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 254 TQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ +++       + N  ++ +  A+ +  
Sbjct: 374 KEIDSEIELFEIPTINENQIIKTLHDAKVSEG 405


>gi|308184052|ref|YP_003928185.1| ATP-dependent RNA helicase [Helicobacter pylori SJM180]
 gi|308059972|gb|ADO01868.1| ATP-dependent RNA helicase [Helicobacter pylori SJM180]
          Length = 492

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 140/392 (35%), Positives = 216/392 (55%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 81  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +   + T   I   F         +  +       
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL---D 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 254 TQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ +++       + N  ++ +  A+ +  
Sbjct: 374 KEIDSEIELFEIPTINENQIIKTLHDAKVSEG 405


>gi|261837694|gb|ACX97460.1| ATP-dependent RNA helicase [Helicobacter pylori 51]
          Length = 492

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 140/392 (35%), Positives = 216/392 (55%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 81  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +   + T   I   F         +  +       
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL---D 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 254 TQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ +++       + N  ++ +  A+ +  
Sbjct: 374 KEIDSEIELFEIPTINENQIIKTLHDAKVSEG 405


>gi|167630436|ref|YP_001680935.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
 gi|167593176|gb|ABZ84924.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
          Length = 540

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 162/459 (35%), Positives = 255/459 (55%), Gaps = 20/459 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F ++ LSPKV  A+ D G+ +P+PIQ K IP+++Q  D+ G AQTGTGKTA+F +PM 
Sbjct: 18  VKFGEIELSPKVAKAIFDMGFEEPSPIQAKAIPVIMQGKDLIGQAQTGTGKTATFGIPMA 77

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     RV+    L+L PTRELA QVA    K G+  +L    + GG   + Q + L 
Sbjct: 78  ETLNPRDGRVQ---ALVLCPTRELAIQVAQEISKIGRQNDLKALPVYGGQSIDRQIRALR 134

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  V+I TPGRILDH +R  L +NN+ ++V+DEAD MLDMGF+  I+ I    P  RQT
Sbjct: 135 YGVQVVIGTPGRILDHLSRKTLRLNNVRMVVLDEADEMLDMGFVEDIEAILKETPEERQT 194

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +Q+++  +++ P+ + ++    T   IE  +                   
Sbjct: 195 LLFSATMPGPIQQLARQYMKEPEFVTISRDKLTVPLIEQVYYECKESQKVDALCRIL--- 251

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + + + IIFC  K+ V  L  +LE +G+    +HG++ Q  R +++  F++G  +L++
Sbjct: 252 DMEEIGSSIIFCRTKRGVDELVAALETRGYFAEGLHGDLTQAQRDRVMKKFRDGKAELLI 311

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ +V HV N+D+P   E+Y+HRIGRTGRAGR G A TL+   + + +  I
Sbjct: 312 ATDVAARGLDVENVTHVINYDIPQDPESYVHRIGRTGRAGRKGIAITLINYREYRQLKLI 371

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ--KS 418
           E++ + ++     DL S+   +E+        A K   +     G     K+  S+  + 
Sbjct: 372 ERVTKARIQR--RDLPSMADIVER-----QKEAHKMKIVKLLDGGHFGEYKSIISELAEE 424

Query: 419 HIPLKESEKISKL-----QQDIQENDADSLGFRGNMPAF 452
           + P++ +    KL     + + ++++A   G  G  P  
Sbjct: 425 YDPMEIAAATLKLLIEGPEAETEKDEAPEFGNTGAEPGM 463


>gi|108562675|ref|YP_626991.1| ATP-dependent RNA helicase [Helicobacter pylori HPAG1]
 gi|217031464|ref|ZP_03436969.1| hypothetical protein HPB128_21g22 [Helicobacter pylori B128]
 gi|298736807|ref|YP_003729337.1| putative helicase [Helicobacter pylori B8]
 gi|107836448|gb|ABF84317.1| ATP-dependent RNA helicase [Helicobacter pylori HPAG1]
 gi|216946664|gb|EEC25260.1| hypothetical protein HPB128_21g22 [Helicobacter pylori B128]
 gi|298356001|emb|CBI66873.1| putative helicase [Helicobacter pylori B8]
          Length = 492

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 140/392 (35%), Positives = 216/392 (55%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 81  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +   + T   I   F         +  +       
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL---D 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 254 TQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ +++       + N  ++ +  A+ +  
Sbjct: 374 KEIDSEIELFEIPTINENQIIKTLHDAKVSEG 405


>gi|91775307|ref|YP_545063.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|91775451|ref|YP_545207.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|91709294|gb|ABE49222.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|91709438|gb|ABE49366.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|167042456|gb|ABZ07182.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
           HF4000_ANIW133B20]
          Length = 515

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 173/435 (39%), Positives = 255/435 (58%), Gaps = 9/435 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DLGL+  ++ A+ D GY  PTPIQ + IPLVL   D+   AQTGTGKTA F LP+L
Sbjct: 12  LQFSDLGLAEPILRAIADTGYTHPTPIQAQAIPLVLNGGDLLAGAQTGTGKTAGFTLPVL 71

Query: 61  TILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L     +V+   PR LIL PTRELAAQV ++ + YGK+  LT  ++ GG+    Q ++
Sbjct: 72  HLLHAKPVKVKPGQPRCLILTPTRELAAQVEESVQTYGKHLKLTSMVMFGGVGINPQIER 131

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++  D+L+ TPGR+LDH  +  + ++ IEILV+DEADRMLDMGFI  I+ + +L+P  R
Sbjct: 132 LKKPLDILVATPGRLLDHAAQKTIDLSAIEILVLDEADRMLDMGFIRDIKRVLALLPKKR 191

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +DE++++++  L NP  +EV   ++ +E +E         + +        
Sbjct: 192 QNLLFSATFSDEIKELADGLLHNPGFVEVARRNTASELVEQAVHLVSQGHKRDLVAHL-- 249

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  K  +IF   K     L   L K G +  AIHGN  Q +R K L+ FK GT+ +
Sbjct: 250 -IRHHDWKQVLIFTRTKHGANRLAEKLSKDGIAAAAIHGNKSQSARTKALAEFKNGTLPV 308

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV  E+IK + 
Sbjct: 309 LVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGCSGAAVSLVDGEEIKLLK 368

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IE+LI++++  L  D+     P +K  +   +   +  P   + T  +R +       +
Sbjct: 369 GIERLIKREIPRL--DIPGAFVPSDKPGV--ESRPPRQQPAQARQTKSNRPQAQRERSDA 424

Query: 419 HIPLKESEKISKLQQ 433
                E    +K +Q
Sbjct: 425 AGNSAEPRSGNKPRQ 439


>gi|317013693|gb|ADU81129.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori Gambia94/24]
          Length = 491

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 139/392 (35%), Positives = 216/392 (55%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 81  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +   + T   I   F         +  +       
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSNITNADITQRFYVINEHERAEAIMRLL---D 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 254 TQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ +++       + N  ++ +  A+ +  
Sbjct: 374 KEIDSEIELFEIPTINENQIIKTLHDAKVSEG 405


>gi|33591417|ref|NP_879061.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|33571059|emb|CAE40549.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|332380818|gb|AEE65665.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
          Length = 476

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 171/447 (38%), Positives = 251/447 (56%), Gaps = 18/447 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL+  ++ A+ D GY  PTPIQ + IPLVLQ  D+   AQTGTGKTA F LP+L
Sbjct: 5   ISFADLGLADSLLRAIADTGYTAPTPIQAQAIPLVLQGGDLLAAAQTGTGKTAGFTLPIL 64

Query: 61  TILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L + +    +   PR LIL PTREL AQVA++ + YGK  +L+  ++ GG+    Q  
Sbjct: 65  HRLMQTKPAARKPGRPRCLILTPTRELTAQVAESVQTYGKYASLSSMVMFGGVNINPQIS 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++  D+L+ TPGR+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ + +L+P  
Sbjct: 125 ALKKPLDILVATPGRLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L +P  + V   ++  E +          + +       
Sbjct: 185 RQNLLFSATFSDEIRSLARGVLNDPGEVSVTPRNTATELVTQTVHLVEQHHKRDLVSHL- 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               +      ++F   K     L   L K G S  AIHGN  Q +R + LS FK+G++ 
Sbjct: 244 --IRESGWHQVLVFTRTKHGANRLAEKLVKDGLSAVAIHGNKSQSARTRALSGFKDGSVA 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV   +IK +
Sbjct: 302 VLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDDSEIKLL 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            AIE+LI+K ++     +    PP      A    A       Q++ G +R  +    Q+
Sbjct: 362 KAIERLIKKPIER--RAVDGWTPP------AGGPTAEDRADRGQRAGGDNRAPQARDGQR 413

Query: 418 ----SHIPLKESEKISKLQQDIQENDA 440
               +H         +  + D + NDA
Sbjct: 414 RATGAHPQGSAPRNAAGPRADAKRNDA 440


>gi|294637622|ref|ZP_06715901.1| putative ATP-dependent RNA helicase [Edwardsiella tarda ATCC 23685]
 gi|291089177|gb|EFE21738.1| putative ATP-dependent RNA helicase [Edwardsiella tarda ATCC 23685]
          Length = 448

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 143/445 (32%), Positives = 234/445 (52%), Gaps = 9/445 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++L L  +++ A+ D GY +PT IQI  IP  +   DV G A TGTGKTA+F+LP + 
Sbjct: 5   NFSELELDERLLDALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  ++  L +  + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELARHTTLDITTITGGVSYINHAEIFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L +         ++E L++DEADRMLDMGF   I+ + +   + +QT
Sbjct: 125 TNQDMVVATPGRLLQYIKEENFDCRSVETLILDEADRMLDMGFAKDIETVAAETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT  +D +   ++  L++P  ++V+      E  +       A   K    L   L
Sbjct: 185 LLFSATLESDAVHDFADRLLEDP--VDVSAEPPRRERKKIQQWYYRADSLKHKTALLCHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  +   +IF  +++ V  L   L + G   C + G + Q  R + +    +G + ++
Sbjct: 243 LRQPDVTKSVIFVRKRERVHELVTWLHQAGIQACFLEGELVQAKRNEAIKRMLDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIPD+ HVFNFD+P  A+ Y+HRIGRT RAGR G A +L+   D   +  
Sbjct: 303 VATDVAARGLDIPDISHVFNFDMPRSADVYLHRIGRTARAGRKGTAISLIEAHDQLLLGK 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           + + +++ +   +  +  L P  +   +       K     +     D +KK   ++  H
Sbjct: 363 VSRYVQEPMK--SRVVDELRPETKAPSLKNKGKPSKKVLAKRAQKKLDEQKKKGKTKVRH 420

Query: 420 IPLKESEKISKLQQDIQENDADSLG 444
              ++S+ + K +Q    +   + G
Sbjct: 421 ---RDSKNVGKRRQPSTGHQPATEG 442


>gi|238854499|ref|ZP_04644837.1| cold-shock DEAD box protein A [Lactobacillus jensenii 269-3]
 gi|260664817|ref|ZP_05865668.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           SJ-7A-US]
 gi|282934107|ref|ZP_06339386.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
 gi|313472627|ref|ZP_07813116.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           jensenii 1153]
 gi|238832852|gb|EEQ25151.1| cold-shock DEAD box protein A [Lactobacillus jensenii 269-3]
 gi|239529420|gb|EEQ68421.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           jensenii 1153]
 gi|260561300|gb|EEX27273.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           SJ-7A-US]
 gi|281301854|gb|EFA94119.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
          Length = 484

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 145/381 (38%), Positives = 220/381 (57%), Gaps = 13/381 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+  ++ A+  +G+ + TPIQ KTIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFTELGLNDALLKAIKRSGFEEATPIQEKTIPLALAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++    +    + L++EPTRELA Q  +   + G++    V ++ GG     Q + L+
Sbjct: 61  QKIDN---KEHFIQALVIEPTRELAIQTQEELYRLGRDEKAKVQVVYGGADISRQIRALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGRILDH  R  + ++ I+ +V+DEAD MLDMGFI  I++I         T
Sbjct: 118 QTPAILVGTPGRILDHLKRKTVKLDKIKTVVLDEADEMLDMGFIQDIESILDFAKNREHT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + ++ E F++ P+ +++ +   TA+ I+  FV                  
Sbjct: 178 LLFSATMPKPILRIGEKFMKEPEIVQIKSKELTADLIDQYFVRAKEAEKFDIMCRL---I 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F   K+ V  L   L  +G++   IHG++ Q  RM +L  FK G + ++V
Sbjct: 235 DVQAPDLAVVFGRTKRRVDELTRGLVARGYNAAGIHGDLSQAKRMSVLKRFKNGKLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKNGISVTFVTPNEIGYMRTI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPP 381
           E L +KK       +S L PP
Sbjct: 355 ENLTKKK-------MSPLRPP 368


>gi|296112376|ref|YP_003626314.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis RH4]
 gi|295920070|gb|ADG60421.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis RH4]
          Length = 577

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 146/442 (33%), Positives = 242/442 (54%), Gaps = 8/442 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLGL+  ++ A+  +GY  PTPIQ K IP  L   D+   AQTG+GKTA+FVLP+L 
Sbjct: 19  QFSDLGLNKPILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLD 78

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL-IGGIPFEAQNKKLE 120
            + +     +  + LIL PTRELA QV D+  +YG       ++  +GG P+  Q + L+
Sbjct: 79  KMSRKPTIEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALK 138

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V+I TPGR++DH   G++ ++ +++L++DEADRMLDMGF   I+ I    P TRQT
Sbjct: 139 KGVQVIIATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQT 198

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT    + K++E+F  NP+++ +   S+  +   +       + +     +   + 
Sbjct: 199 VMSSATWDGAVGKIAESFTVNPEKVSIKVESAHIDESVYYCDDFNHKNN-----ILLQVL 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   +K  +IF   K +   L   L + GF    +HG++ Q  R +I+S+ K G   L+V
Sbjct: 254 NNPKIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDLLV 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + HV N+D+P + E+Y+HRIGR GRAGR G A  L + +D + ++ I
Sbjct: 314 ATDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQLEHI 373

Query: 361 EKLIEKK--VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            + ++++  V  + G     N  ++  +  +     +N         F+R    + S+  
Sbjct: 374 NRYLKRQMSVSTIEGLEPRRNFGIQSQERRRGRSKSQNRTRQDGRQNFERTDHKFGSRNR 433

Query: 419 HIPLKESEKISKLQQDIQENDA 440
           H    E     K ++      +
Sbjct: 434 HEHRHERSFEGKRERFEDRERS 455


>gi|255037844|ref|YP_003088465.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254950600|gb|ACT95300.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 445

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 140/422 (33%), Positives = 235/422 (55%), Gaps = 7/422 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L+ +++ A+ +AGY +PTPIQ + IP+ L   D+ GIAQTGTGKTA++ LP+L 
Sbjct: 7   TFEQFKLNRQLLNAIEEAGYTEPTPIQEQAIPVALAGQDILGIAQTGTGKTAAYTLPLLM 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    + + PR LIL PTRELA Q+++   +  K  ++   +L GG+  + Q + + +
Sbjct: 67  RIKYA--QGQHPRALILAPTRELAMQISEAIAQLSKYTDIRTVVLYGGVGPKTQIEAIRK 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR +D + + ++++ ++ ++V+DEAD+M+DMGF+P I+ +  ++P  RQ +
Sbjct: 125 GVDIIVATPGRFMDLYFQEEIVVKHLNVMVLDEADKMMDMGFMPQIRKLLEVIPRKRQNM 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT + +++ +S  FL+ P RIEV   ++ AE +           +K   L   L   
Sbjct: 185 LFSATFSGKVENLSYEFLEFPTRIEVTPQATAAEMVTQVLYEVPNFRTKINLLSYLLEDK 244

Query: 242 QDTMKNGIIFCNQKKN--VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  +   +++    V     +       +  IH N  Q +R+  +  F+EG +++M
Sbjct: 245 EALTRVLVFTRSREVAGLVHQNLLNRVVPEAELRVIHANKGQNTRINAMEAFREGNVRVM 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARG+DI +V HV NFDVP   E+Y+HRIGRTGRA   G A T +   D  HI  
Sbjct: 305 VATDVVARGIDITEVSHVVNFDVPLIYEDYVHRIGRTGRANNVGNAITFMTIADEYHIRK 364

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPL-EKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           IE +I  ++       D+     P  E+ D+ +    ++    P     F  +K  Y   
Sbjct: 365 IEAMIRMEIPRAEFPDDVYIAETPFQERQDMLREIDNQRRKEDPTFKGAFHEKKHGYPPA 424

Query: 417 KS 418
           + 
Sbjct: 425 RK 426


>gi|261341381|ref|ZP_05969239.1| ATP-dependent RNA helicase RhlE [Enterobacter cancerogenus ATCC
           35316]
 gi|288316692|gb|EFC55630.1| ATP-dependent RNA helicase RhlE [Enterobacter cancerogenus ATCC
           35316]
          Length = 457

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 166/447 (37%), Positives = 254/447 (56%), Gaps = 7/447 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P+++ ++ + GYV+PTPIQ K IP VLQ  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPEILRSIAEQGYVEPTPIQQKAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y +  N+   ++ GG+    Q  
Sbjct: 61  ELLVKNQPHAKGRRPVRALILTPTRELAAQIGENVRDYSRYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAR 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++E  L NP  +EV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDEIKALAEKLLHNPLEVEVARRNTASEQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 QMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE+L++K++  +  +   ++P ++   I Q+   ++     +      R +       
Sbjct: 358 RDIERLLKKEIPRITTEGYDVDPSIQAEPI-QNGRQQRGGGGGRGQQQPRRSEGGAPKAS 416

Query: 418 SHIPLKESEKISKLQQDIQENDADSLG 444
              P +  E  S  +   +  +A   G
Sbjct: 417 GKPPRRNGEAKSGGENPWRSGEARPAG 443


>gi|15611302|ref|NP_222953.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori J99]
 gi|4154758|gb|AAD05818.1| ATP-DEPENDENT RNA HELICASE DEAD [Helicobacter pylori J99]
          Length = 491

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 138/392 (35%), Positives = 217/392 (55%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+         + L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 81  NLKNN----HTIKALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +   + T   I   F         +  +       
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL---D 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 254 TQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVF++ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDISGVSHVFSYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ +++       + N  ++ +  A+ +  
Sbjct: 374 KEIDSEIELFEIPTINENQIIKTLHDAKVSEG 405


>gi|254457659|ref|ZP_05071087.1| putative helicase [Campylobacterales bacterium GD 1]
 gi|207086451|gb|EDZ63735.1| putative helicase [Campylobacterales bacterium GD 1]
          Length = 423

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 163/426 (38%), Positives = 255/426 (59%), Gaps = 12/426 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY +PTPIQ + IP++L R D+   AQTGTGKTA F LPML
Sbjct: 1   MSFNTLGLSAPLLKAIKEQGYTEPTPIQKQAIPVILNRKDILAGAQTGTGKTAGFTLPML 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 K  +     + LIL PTRELAAQVA++ E YGK+      ++ GG+    Q  +
Sbjct: 61  ELLSRAKHTSGKHHVKALILTPTRELAAQVAESVEVYGKHLPFKSCVIFGGVKINPQIVQ 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D++I TPGR+LDH ++  + ++ ++ L++DEADRMLDMGFI  I+ I  ++P  R
Sbjct: 121 LRKGIDIVIATPGRLLDHISQKTIDLSKVDFLILDEADRMLDMGFINDIRKILEILPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +DE++K+S+  L +P  IEV   ++ +ET++        +  ++       
Sbjct: 181 QNLLFSATYSDEIKKLSDRLLNSPTLIEVARRNTASETVKQAVYPVDKERKRELLTHL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +    K  ++F   K     L   LEK G +  AIHGN  Q +R K L++FK+  +++
Sbjct: 239 -INDGKWKQVLVFTRTKHGANRLSDQLEKDGITSAAIHGNKSQNARTKALADFKKSEVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV N+++PN +E+Y+HRIGRTGRAG  G+A +LV  ++++++ 
Sbjct: 298 LVATDIAARGIDIDQLPHVVNYELPNVSEDYVHRIGRTGRAGNEGEAISLVCVDELEYLA 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-------KNNPIPQKSTGFDRRKK 411
            IEKLI K +  ++      +P ++   I Q   +R       +N P  + + G    + 
Sbjct: 358 NIEKLINKDIPKIHLKGFKPDPSIKAEPINQGGGSRGKGGGNSRNRPRNKPTQGGSTSRG 417

Query: 412 NYSSQK 417
           N + ++
Sbjct: 418 NSNGRR 423


>gi|75061689|sp|Q5R6D8|DDX46_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46
 gi|55731939|emb|CAH92678.1| hypothetical protein [Pongo abelii]
          Length = 1032

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 239/448 (53%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 432

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 433 HIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 492

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 493 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 552

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ +    L  P  ++V   S     +E        +  KK   L 
Sbjct: 553 DRQTVMFSATFPRAMEALVRRILSKPIEVQVGGRSVVCSDVEQQV--IVIEEEKKFLKLL 610

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT 
Sbjct: 611 ELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTC 670

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 671 KLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARY 730

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   +   
Sbjct: 731 AGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDET 783

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +   E +K+ K    +Q++D +   
Sbjct: 784 EQAL-ANERKKLQKAALGLQDSDDEDAA 810


>gi|119582642|gb|EAW62238.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_a [Homo
           sapiens]
 gi|119582646|gb|EAW62242.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_a [Homo
           sapiens]
          Length = 883

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 240/448 (53%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 432

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 433 HIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 492

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 493 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 552

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S     +E        +  KK   L 
Sbjct: 553 DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQV--IVIEEEKKFLKLL 610

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT 
Sbjct: 611 ELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTC 670

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 671 KLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARY 730

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   +   
Sbjct: 731 AGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDET 783

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +   E +K+ K    +Q++D +   
Sbjct: 784 EQAL-ANERKKLQKAALGLQDSDDEDAA 810


>gi|313202537|ref|YP_004041194.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312441853|gb|ADQ78209.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 408

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 133/413 (32%), Positives = 216/413 (52%), Gaps = 11/413 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   V+  +    + + TP+Q +TIP++LQ+ DV   AQTGTGKTA+F+LP+L
Sbjct: 1   MRFDELPLCDAVLDGLQAMNFKEATPVQAETIPVILQKRDVIACAQTGTGKTAAFILPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL- 119
             L+           +I+ PTRELA Q+    E +    + +   + GG    A + +  
Sbjct: 61  HNLQAEPLAADKVNAIIMAPTRELAQQIDQQMEGFSYFTSFSSVAVYGGNDASAWDTQRR 120

Query: 120 --ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             + GADV+I TPGR+L H N   +  ++++  ++DEADRMLDMGF   I  + + +P  
Sbjct: 121 GLQNGADVVIATPGRLLSHINLYDIDFSHVKYFILDEADRMLDMGFFDDIMQVVNRLPKD 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  +++ +++  L NP  +++                 Y  Y  +   + +
Sbjct: 181 RQTIMFSATMPPKIRLLAKTILNNPVEVKIAVSRPPESI----MQTAYICYEAQKHGIIR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L ++      IIF   K  V  L  +  + G SV  +H ++DQ  R  ++  FK   + 
Sbjct: 237 HLFAEQEATKVIIFSGSKLKVKELFKTFRQMGLSVGEMHSDLDQAQRDHVMHEFKNNRVS 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ +RG+DI D+  V N+DVP+ AE+Y+HRIGRT RA   G + T V++E+    
Sbjct: 297 ILVATDIVSRGIDIDDISLVINYDVPHDAEDYVHRIGRTARASAKGMSITFVSEEEQYKF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
             IE  +EK +  +   +     P  K ++ +  H +           F R K
Sbjct: 357 KQIEDFLEKDIYKIPMPVELGEAPEYKPELHRFGHKK----FASGKGKFRRNK 405


>gi|207091782|ref|ZP_03239569.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 492

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 140/392 (35%), Positives = 215/392 (54%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ +V +AG+  P+PIQ K IP VLQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 81  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 137 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +     T   I   F         +  +       
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSDITNTDITQRFYVINEHERAEAIMRLL---D 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 254 TQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 314 TDVASRGLDIGGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ +++       + N  ++ +  A+ +  
Sbjct: 374 KEIDSEIELFEIPTINENQIIKTLHDAKVSEG 405


>gi|326578004|gb|EGE27868.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis O35E]
          Length = 581

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 145/442 (32%), Positives = 241/442 (54%), Gaps = 8/442 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLGL+  ++ A+  +GY  PTPIQ K IP  L   D+   AQTG+GKTA+FVLP+L 
Sbjct: 19  QFSDLGLNKPILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLD 78

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL-IGGIPFEAQNKKLE 120
            + +     +  + LIL PTRELA QV D+  +YG       ++  +GG P+  Q + L+
Sbjct: 79  KMSRKPTIEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALK 138

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V+I TPGR++DH   G++ ++ +++L++DEADRMLDMGF   I+ I    P TRQT
Sbjct: 139 KGVQVIIATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQT 198

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT    + K++E+F  NP+++ +   S+  +   +       + +     +   + 
Sbjct: 199 VMSSATWDGAVGKIAESFTVNPEKVSIKVESAHIDESVYYCDDFNHKNN-----ILLQVL 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   +K  +IF   K +   L   L + GF    +HG++ Q  R +I+S+ K G   ++V
Sbjct: 254 NNPKIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLV 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + HV N+D+P + E+Y+HRIGR GRAGR G A  L +  D + ++ I
Sbjct: 314 ATDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSINDNRQLEHI 373

Query: 361 EKLIEKK--VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            + ++++  V  + G     N  ++  +  +     +N         F+R    + S+  
Sbjct: 374 NRYLKRQMSVSTIEGLEPRRNFGIQSQERRRGRSKSQNRTRQDGRQNFERTDHKFGSRNR 433

Query: 419 HIPLKESEKISKLQQDIQENDA 440
           H    E     K ++      +
Sbjct: 434 HEHRHERSFEGKRERFEDRERS 455


>gi|301754307|ref|XP_002912967.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Ailuropoda melanoleuca]
          Length = 1031

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 240/448 (53%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 432

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 433 HIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 492

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 493 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 552

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S     +E        +  KK   L 
Sbjct: 553 DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQV--IVIEEEKKFLKLL 610

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT 
Sbjct: 611 ELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTC 670

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 671 KLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARY 730

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   +   
Sbjct: 731 AGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDET 783

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +   E +K+ K    +Q++D +   
Sbjct: 784 EQAL-ANERKKLQKAALGLQDSDDEDAA 810


>gi|119582644|gb|EAW62240.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_c [Homo
           sapiens]
          Length = 1032

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 240/448 (53%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 432

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 433 HIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 492

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 493 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 552

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S     +E        +  KK   L 
Sbjct: 553 DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQV--IVIEEEKKFLKLL 610

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT 
Sbjct: 611 ELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTC 670

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 671 KLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARY 730

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   +   
Sbjct: 731 AGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDET 783

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +   E +K+ K    +Q++D +   
Sbjct: 784 EQAL-ANERKKLQKAALGLQDSDDEDAA 810


>gi|73971268|ref|XP_531911.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Canis familiaris]
 gi|194219918|ref|XP_001918233.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX46
           (DEAD box protein 46) (PRP5 homolog) [Equus caballus]
          Length = 1031

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 240/448 (53%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 432

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 433 HIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 492

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 493 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 552

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S     +E        +  KK   L 
Sbjct: 553 DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQV--IVIEEEKKFLKLL 610

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT 
Sbjct: 611 ELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTC 670

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 671 KLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARY 730

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   +   
Sbjct: 731 AGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDET 783

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +   E +K+ K    +Q++D +   
Sbjct: 784 EQAL-ANERKKLQKAALGLQDSDDEDAA 810


>gi|332234495|ref|XP_003266442.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Nomascus
           leucogenys]
          Length = 1031

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 240/448 (53%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 432

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 433 HIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 492

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 493 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 552

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S     +E        +  KK   L 
Sbjct: 553 DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQV--IVIEEEKKFLKLL 610

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT 
Sbjct: 611 ELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTC 670

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 671 KLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARY 730

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   +   
Sbjct: 731 AGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDET 783

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +   E +K+ K    +Q++D +   
Sbjct: 784 EQAL-ANERKKLQKAALGLQDSDDEDAA 810


>gi|297295088|ref|XP_002804561.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like isoform 2
           [Macaca mulatta]
 gi|297295090|ref|XP_001109331.2| PREDICTED: probable ATP-dependent RNA helicase DDX46-like isoform 1
           [Macaca mulatta]
          Length = 1032

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 240/448 (53%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 432

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 433 HIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 492

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 493 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 552

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S     +E        +  KK   L 
Sbjct: 553 DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQV--IVIEEEKKFLKLL 610

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT 
Sbjct: 611 ELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTC 670

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 671 KLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARY 730

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   +   
Sbjct: 731 AGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDET 783

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +   E +K+ K    +Q++D +   
Sbjct: 784 EQAL-ANERKKLQKAALGLQDSDDEDAA 810


>gi|296192757|ref|XP_002744211.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Callithrix jacchus]
          Length = 1032

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 240/448 (53%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 432

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 433 HIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 492

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 493 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 552

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S     +E        +  KK   L 
Sbjct: 553 DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQV--IVIEEEKKFLKLL 610

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT 
Sbjct: 611 ELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTC 670

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 671 KLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARY 730

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   +   
Sbjct: 731 AGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDET 783

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +   E +K+ K    +Q++D +   
Sbjct: 784 EQAL-ANERKKLQKAALGLQDSDDEDAA 810


>gi|256848375|ref|ZP_05553818.1| autoaggregation-mediating protein [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714973|gb|EEU29951.1| autoaggregation-mediating protein [Lactobacillus coleohominis
           101-4-CHN]
          Length = 500

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 151/443 (34%), Positives = 243/443 (54%), Gaps = 14/443 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS  ++ AV  +GY + TPIQ +TIP+VL+  DV G AQTGTGKTA+F LP++
Sbjct: 13  LKFGELGLSKSLLRAVKQSGYEEATPIQAQTIPMVLKGQDVIGQAQTGTGKTAAFGLPII 72

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++     ++ PTRELA Q  +   + G + ++ V ++ GG     Q   L+
Sbjct: 73  EHIDLDNPAIQAI---VISPTRELAIQTQEELYRLGHDKHVKVQVVYGGADIRRQINSLK 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGR+ DH +RG + + +I+ LV+DEAD ML+MGF+  I+ I    P  RQT
Sbjct: 130 KHPQILVGTPGRLRDHISRGTVNLEHIQTLVLDEADEMLNMGFLDDIEAIIKETPEKRQT 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++++   F+++P+ +++     T + ++  +V                  
Sbjct: 190 LLFSATMPPEIKRIGVQFMRDPQMVKIKAKELTTDLVDQYYVRAKDYEKFDIMTRL---I 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K+ V  L   L  +G++   IHG++ Q  R KI+  FK G + ++V
Sbjct: 247 DVQDPDLTIVFGRTKRRVDELSRGLVARGYNAAGIHGDLTQDRRSKIMKKFKNGDLDILV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P+  ++Y+HRIGRTGRAG HG + T V   ++ ++  I
Sbjct: 307 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEI 366

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EKL   +       +  L PP E+ +  +   A   N I          K   S++K   
Sbjct: 367 EKLTRVR-------MLPLKPPTEE-EAFRGQVASAVNDIDDLIKDEATDKYRQSAEKLLA 418

Query: 421 PLKESEKISKLQQDIQENDADSL 443
                + ++ L  D+  +DA  +
Sbjct: 419 THDAVDLVAALLNDLTTDDASKV 441


>gi|160420299|ref|NP_666087.3| probable ATP-dependent RNA helicase DDX46 [Mus musculus]
          Length = 1031

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 240/448 (53%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 432

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 433 HIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 492

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 493 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 552

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S     +E        +  KK   L 
Sbjct: 553 DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQV--IVIEEEKKFLKLL 610

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT 
Sbjct: 611 ELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTC 670

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 671 KLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARY 730

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   +   
Sbjct: 731 AGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDET 783

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +   E +K+ K    +Q++D +   
Sbjct: 784 EQAL-ANERKKLQKAALGLQDSDDEDAA 810


>gi|158257008|dbj|BAF84477.1| unnamed protein product [Homo sapiens]
          Length = 1032

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 240/448 (53%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 432

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 433 HIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 492

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 493 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 552

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S     +E        +  KK   L 
Sbjct: 553 DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQV--IVIEEEKKFLKLL 610

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT 
Sbjct: 611 ELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTC 670

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 671 KLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARY 730

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   +   
Sbjct: 731 AGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDET 783

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +   E +K+ K    +Q++D +   
Sbjct: 784 EQAL-ANERKKLQKAALGLQDSDDEDAA 810


>gi|41327773|ref|NP_055644.2| probable ATP-dependent RNA helicase DDX46 [Homo sapiens]
 gi|332821955|ref|XP_517939.3| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Pan
           troglodytes]
 gi|116241326|sp|Q7L014|DDX46_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46; AltName: Full=PRP5 homolog
 gi|15126766|gb|AAH12304.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapiens]
 gi|119582645|gb|EAW62241.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_d [Homo
           sapiens]
          Length = 1031

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 240/448 (53%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 432

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 433 HIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 492

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 493 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 552

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S     +E        +  KK   L 
Sbjct: 553 DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQV--IVIEEEKKFLKLL 610

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT 
Sbjct: 611 ELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTC 670

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 671 KLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARY 730

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   +   
Sbjct: 731 AGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDET 783

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +   E +K+ K    +Q++D +   
Sbjct: 784 EQAL-ANERKKLQKAALGLQDSDDEDAA 810


>gi|62089534|gb|AAH92240.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Mus musculus]
          Length = 1027

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 240/448 (53%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 432

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 433 HIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 492

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 493 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 552

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S     +E        +  KK   L 
Sbjct: 553 DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQV--IVIEEEKKFLKLL 610

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT 
Sbjct: 611 ELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTC 670

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 671 KLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARY 730

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   +   
Sbjct: 731 AGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDET 783

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +   E +K+ K    +Q++D +   
Sbjct: 784 EQAL-ANERKKLQKAALGLQDSDDEDAA 810


>gi|85540944|sp|Q569Z5|DDX46_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46
          Length = 1032

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 240/448 (53%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 432

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 433 HIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 492

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 493 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 552

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S     +E        +  KK   L 
Sbjct: 553 DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQV--IVIEEEKKFLKLL 610

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT 
Sbjct: 611 ELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTC 670

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 671 KLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARY 730

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   +   
Sbjct: 731 AGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDET 783

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +   E +K+ K    +Q++D +   
Sbjct: 784 EQAL-ANERKKLQKAALGLQDSDDEDAA 810


>gi|20806137|ref|NP_620798.1| probable ATP-dependent RNA helicase DDX46 [Rattus norvegicus]
 gi|81890303|sp|Q62780|DDX46_RAT RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46; AltName: Full=Helicase of
           117.4 kDa
 gi|897915|gb|AAC52210.1| RNA helicase [Rattus norvegicus]
 gi|78174325|gb|AAI07591.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Rattus norvegicus]
          Length = 1032

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 240/448 (53%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 432

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 433 HIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 492

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 493 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 552

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S     +E        +  KK   L 
Sbjct: 553 DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQV--IVIEEEKKFLKLL 610

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT 
Sbjct: 611 ELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTC 670

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 671 KLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARY 730

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   +   
Sbjct: 731 AGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDET 783

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +   E +K+ K    +Q++D +   
Sbjct: 784 EQAL-ANERKKLQKAALGLQDSDDEDAA 810


>gi|23336902|tpg|DAA00076.1| TPA_exp: Prp5-like DEAD-box protein [Homo sapiens]
          Length = 1032

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 240/448 (53%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 432

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 433 HIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 492

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 493 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 552

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S     +E        +  KK   L 
Sbjct: 553 DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQV--IVIEEEKKFLKLL 610

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT 
Sbjct: 611 ELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTC 670

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 671 KLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARY 730

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   +   
Sbjct: 731 AGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDET 783

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +   E +K+ K    +Q++D +   
Sbjct: 784 EQAL-ANERKKLQKAALGLQDSDDEDAA 810


>gi|119895518|ref|XP_586902.3| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Bos taurus]
 gi|297477226|ref|XP_002689237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Bos taurus]
 gi|296485325|gb|DAA27440.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Bos taurus]
          Length = 1031

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 240/448 (53%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 432

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 433 HIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 492

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 493 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 552

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S     +E        +  KK   L 
Sbjct: 553 DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQV--IVIEEEKKFLKLL 610

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT 
Sbjct: 611 ELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTC 670

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 671 KLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARY 730

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   +   
Sbjct: 731 AGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDET 783

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +   E +K+ K    +Q++D +   
Sbjct: 784 EQAL-ANERKKLQKAALGLQDSDDEDAA 810


>gi|148709275|gb|EDL41221.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Mus musculus]
          Length = 963

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 240/448 (53%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 305 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 364

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 365 HIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 424

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 425 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 484

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S     +E        +  KK   L 
Sbjct: 485 DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQV--IVIEEEKKFLKLL 542

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT 
Sbjct: 543 ELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTC 602

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 603 KLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARY 662

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   +   
Sbjct: 663 AGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDET 715

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +   E +K+ K    +Q++D +   
Sbjct: 716 EQAL-ANERKKLQKAALGLQDSDDEDAA 742


>gi|40788370|dbj|BAA34521.2| KIAA0801 protein [Homo sapiens]
          Length = 1058

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 240/448 (53%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 399 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 458

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 459 HIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 518

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 519 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 578

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S     +E        +  KK   L 
Sbjct: 579 DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQV--IVIEEEKKFLKLL 636

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT 
Sbjct: 637 ELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTC 696

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 697 KLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARY 756

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   +   
Sbjct: 757 AGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDET 809

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +   E +K+ K    +Q++D +   
Sbjct: 810 EQAL-ANERKKLQKAALGLQDSDDEDAA 836


>gi|57529371|ref|NP_001006293.1| probable ATP-dependent RNA helicase DDX27 [Gallus gallus]
 gi|53130268|emb|CAG31463.1| hypothetical protein RCJMB04_6k21 [Gallus gallus]
          Length = 758

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 158/475 (33%), Positives = 246/475 (51%), Gaps = 18/475 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F+LP+L
Sbjct: 180 LSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVL 239

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++  +  ++T  L +GG+  + Q   L 
Sbjct: 240 ERLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALR 299

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            G D+LI TPGR++DH  N     ++++E+L++DEADRMLD  F   ++ I  L    RQ
Sbjct: 300 SGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSRHRQ 359

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMT+E++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 360 TMLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSAL 419

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 420 LTRTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQIDIL 479

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K +  
Sbjct: 480 VATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 539

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH------ARKNNPIPQKSTGFDRRKKNY 413
           I K  +  V         +    EKI+  + +        R+   + Q     ++ KK  
Sbjct: 540 IVKAAKTPVKARILPQDVILKFREKIENLEKDVYAVLCLEREEREMQQSEAQINKAKKQL 599

Query: 414 SS----------QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
                       ++S    +E  K  KL + +QE D    G +     FM    R
Sbjct: 600 EEGKQEAATKGVERSWFQTREERKKEKLAKALQEFDLALRGKKKR-KKFMQDTQR 653


>gi|319638186|ref|ZP_07992949.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
 gi|317400459|gb|EFV81117.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
          Length = 469

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 156/442 (35%), Positives = 230/442 (52%), Gaps = 8/442 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L   D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVRSEGYESPTPIQAQAIPFALDGRDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QRLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPTDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    ++P+ IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK I +K+  L  +      P  K   A      K     +KS G+   KK       
Sbjct: 360 KIEKYIGRKLPELTIE---GMEPTRKRKSAGGKPKGKGGWGDRKSGGWRGDKKPGKEGFG 416

Query: 419 HIPLKESEKISKLQQDIQENDA 440
                E  K    ++D  + D 
Sbjct: 417 GKSRGEGHKKDGFKKDGFKKDG 438


>gi|301067543|ref|YP_003789566.1| superfamily II DNA and RNA helicase [Lactobacillus casei str.
           Zhang]
 gi|300439950|gb|ADK19716.1| Superfamily II DNA and RNA helicase [Lactobacillus casei str.
           Zhang]
          Length = 502

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 143/368 (38%), Positives = 216/368 (58%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ A+  +G+ + TPIQ +TIPLVL   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFKELGLDYDLLKAIAQSGFEEATPIQAETIPLVLAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++K    ++    L++ PTRELA Q  +   + G++  + V  + GG     Q ++L 
Sbjct: 61  QNIDKADRSIQ---ALVISPTRELAIQTQEELYRLGQDKKIKVQAVYGGADIRRQIRQLS 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILDH  R  L + N+++LV+DEAD MLDMGFI  I+ I   +P  RQT
Sbjct: 118 EHPQIVVGTPGRILDHIGRHTLKLQNLKVLVLDEADEMLDMGFIDDIEKIVEQMPTARQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+   + +++  F+  P  +++     TA+T+E  +V                  
Sbjct: 178 LLFSATIPASIMRLTNKFMHEPVTVKIKAKELTADTVEQYYVRAKDYEKFDVMTRL---F 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF   K+ V  L   L+ +G+    IHG++ Q+ RM +L  FK G +  +V
Sbjct: 235 DVQDPDLALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG  G + T V   +I+++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIEYLHTI 354

Query: 361 EKLIEKKV 368
           E L +K++
Sbjct: 355 EDLTKKRM 362


>gi|134296504|ref|YP_001120239.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134139661|gb|ABO55404.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
           G4]
          Length = 512

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 171/443 (38%), Positives = 245/443 (55%), Gaps = 17/443 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+P ++ A+++ GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 34  TFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L    +    P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q 
Sbjct: 94  RLLPHASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNPQM 153

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  +++LV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 154 AELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPK 213

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +            +   +  
Sbjct: 214 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQL 273

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                   +K  I+FCN K     L  +LE+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 274 L---RGRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKSQIERMQALDAFKRGEI 330

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 331 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 390

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  IEKLI++ ++       +L+ P      A+H H  +N    +   G  R +  +   
Sbjct: 391 LADIEKLIKRPLEVQTL---ALDKP------ARHRHDERNERGERSERGGRRDRDEHRGA 441

Query: 417 KSHIPLKESEKISKLQQDIQEND 439
            +             + D   +D
Sbjct: 442 SARRSGSAERGGHHRRHDAPVDD 464


>gi|89097884|ref|ZP_01170771.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
 gi|89087386|gb|EAR66500.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
          Length = 485

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 148/373 (39%), Positives = 221/373 (59%), Gaps = 9/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  LS ++  AV + G+ +PTPIQ + IP+ L   D+ G AQTGTGKT +F +P+L 
Sbjct: 3   TFSDFNLSKELEKAVSNMGFEEPTPIQAQAIPIGLSGKDMIGQAQTGTGKTTAFGIPLLE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK--KL 119
            ++         + L+L PTRELA QVA+   + G+   +    + GG     Q +  K 
Sbjct: 63  KIDINEG----IQGLVLAPTRELAVQVAEELNRIGQVKGVRTLPIYGGQDISRQIRALKK 118

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  ++  TPGR++DH  R  + +N I++ V+DEAD ML+MGFI  I+ I S VP  RQ
Sbjct: 119 DRGPHIIAATPGRLIDHIERKTIRLNKIKLAVLDEADEMLNMGFIEDIERILSEVPEQRQ 178

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   +Q ++E F+  P+ +++     T + IE         + K+   +   L
Sbjct: 179 TLLFSATMPRRIQSLAERFMTEPEMVQIKAKELTVKNIEQ---HYMEVHEKQKFDVLCSL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               + +  I+F   KK V  +   L K+G+S   IHG++ Q  R +++  FKE TI +M
Sbjct: 236 LDIQSPELAIVFGRTKKRVDEVVEGLIKRGYSAEGIHGDVPQNKRDQVIRRFKEQTIDIM 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V+  +I H+  
Sbjct: 296 VATDVAARGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAGKKGLAVTFVSPREIDHLKL 355

Query: 360 IEKLIEKKVDWLN 372
           IE++ + K+  + 
Sbjct: 356 IERVTKTKMAKMP 368


>gi|223937455|ref|ZP_03629359.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
 gi|223893806|gb|EEF60263.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
          Length = 645

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 145/390 (37%), Positives = 232/390 (59%), Gaps = 13/390 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGLS ++  A+   G+ + +PIQ + IP++LQ  DV G +QTG+GKTA+F +P +  
Sbjct: 6   FSELGLSAELQKAIDKMGFEQASPIQAEAIPVLLQGRDVVGQSQTGSGKTAAFAVPAIEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++     V+    LIL PTRELA QV++   K         AL I  G  +E Q   L +
Sbjct: 66  VDPQNRSVQ---ILILCPTRELAVQVSEEVHKLSIFKRGIHALPIYGGQSYERQFMGLRQ 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA ++I TPGR++DH  RG L ++ ++++++DEAD MLDMGF   I+ I   VP  RQT+
Sbjct: 123 GAQIVIGTPGRVMDHMRRGTLRLDQVKMVILDEADVMLDMGFREDIEFILQAVPTERQTV 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   +Q++ + + ++P+ + +   + T  T+       Y    +    L   L  
Sbjct: 183 FFSATMPRPIQELIQKYARDPQSVRIEQKAMTVPTV---EQFFYEVDRRFKVELLTRLID 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +K GI+FCN K+ V +L   L  QG+S   +HG++ Q  R ++++ F++  ++ +VA
Sbjct: 240 IHDLKLGIVFCNTKRMVDDLVDHLNAQGYSADRLHGDMSQAMRDRVMNKFRKSGLEFLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+D+P  AE+Y+HRIGRTGRAGR G+A + VA  ++  I  IE
Sbjct: 300 TDVAARGIDVDDVQVVFNYDLPYDAEDYVHRIGRTGRAGRSGRAISFVAGRELFQIQHIE 359

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
           +  + K+           P  ++++ A+ N
Sbjct: 360 RFTKMKIQRAKI------PTADEVETARAN 383


>gi|221065648|ref|ZP_03541753.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
 gi|220710671|gb|EED66039.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
          Length = 473

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 164/385 (42%), Positives = 229/385 (59%), Gaps = 8/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L+  +  AV D GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L 
Sbjct: 4   SFSNLHLAEPLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQ 63

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L +       P        +L PTRELA QVA     Y K+  L   ++ GG+  + Q 
Sbjct: 64  RLMRHENASASPARHPVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKPQT 123

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L++G +VL+ TPGR+LDH     +++N +E +V+DEADRMLD+GF+P +Q I S +P 
Sbjct: 124 LELKKGVEVLVATPGRLLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPK 183

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           +R TLLFSAT + E+++++ ++LQ+P  IEV  P+   ET        Y           
Sbjct: 184 SRTTLLFSATFSPEIKRLAGSYLQDPVTIEVARPN---ETASTVEQRFYKVSDDDKRYAI 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + +  +  ++   IF N K     L  +LE+ G    A+HG+  Q  R+K L  FK G +
Sbjct: 241 RSVLKERDIRQAFIFSNSKLGCARLTRALERDGLRAGALHGDKSQDERLKALEAFKAGEV 300

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+V +D+AARGLDI DV  VFN+DVP  AE+Y+HRIGRTGRAG  G A TLV   D ++
Sbjct: 301 DLLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTDHDSRN 360

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPP 381
           +  IEKLI+KK+D     +  L PP
Sbjct: 361 VADIEKLIKKKIDVEPAPMLDLRPP 385


>gi|311280327|ref|YP_003942558.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308749522|gb|ADO49274.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
          Length = 446

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 166/449 (36%), Positives = 260/449 (57%), Gaps = 11/449 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P+++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDTLGLNPEILRAVAEQGYREPTPIQKQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L +        R  R LIL PTRELAAQV +N  +Y K  N+   ++ GG+    Q  
Sbjct: 61  QRLVQNEPHAKGRRPIRALILTPTRELAAQVGENVREYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  L ++++E+LV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNALKLDSVEVLVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 QMIGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL-----NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             IE+L++K++  +       D S    P++    ++     +    P+++ G  + +++
Sbjct: 358 RDIERLLKKEIPRIAIAGYEPDPSIKAEPIQNGRQSRGGGGGRGQQQPRRNDGGQQPRRS 417

Query: 413 YSSQKSHIPLKESEKISKLQQDIQENDAD 441
                   P K  E  S+ ++  +   A 
Sbjct: 418 DKPAGGGEPRKSGENASRRRRPRKPQAAQ 446


>gi|261377495|ref|ZP_05982068.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC
           14685]
 gi|269146228|gb|EEZ72646.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC
           14685]
          Length = 473

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 156/442 (35%), Positives = 231/442 (52%), Gaps = 8/442 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QRLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLMDLMQSGKVDFTRLEVLILDEADRMLDMGFIDDIETIVEATPADR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    ++P+ IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK I +K+  L  +      P  K   A      K     +KS G+   KK       
Sbjct: 360 KIEKYIGRKLPELTIE---GMEPTRKRKSAGGKPKGKGGWGERKSGGWRGDKKPGKEGFG 416

Query: 419 HIPLKESEKISKLQQDIQENDA 440
                E  K    ++D  + D 
Sbjct: 417 GNSRGEGHKKDGFKKDGFKKDG 438


>gi|15614947|ref|NP_243250.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
 gi|10175004|dbj|BAB06103.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
          Length = 539

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 144/384 (37%), Positives = 233/384 (60%), Gaps = 9/384 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L +  ++  A+++ G+ +P+PIQ K IP +L   DV G AQTGTGKTA+F +P++
Sbjct: 6   IKFNELQIGEEIKKAIIEMGFEEPSPIQAKAIPAILAGGDVIGQAQTGTGKTAAFGIPVV 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +  GR      + LIL PTRELA QV+   +K  K+  +    + GG     Q K L+
Sbjct: 66  EKVSTGRH----VQALILTPTRELAIQVSGEIQKLSKHKKIRTLPIYGGQSIVHQIKALK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V+I TPGRI+DH  R  L+++++  +++DEAD MLDMGFI  I++I   V   RQT
Sbjct: 122 QGVQVVIGTPGRIIDHLRRKTLILDHVNTVILDEADEMLDMGFIDDIESILRQVKNERQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+S  ++ +P+ + +N    TA +I       Y    +        + 
Sbjct: 182 LLFSATMPPAIKKLSRKYMNDPQTVSINRREVTAPSI---DQFYYKVLERNKLDSLCRII 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +  GI+FC  KK V  L  +L+ +G+    +HG++ Q  R  ++  F++ +I+ ++
Sbjct: 239 DSEQIDLGILFCRTKKGVAELTEALQARGYIADGLHGDLTQSQRDAVMRKFRDSSIEFLI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ +V HV N+D+P   E+Y+HRIGRTGRAGR G A TLV   ++KH+ +I
Sbjct: 299 ATDVAARGIDVGNVSHVINYDIPQDPESYVHRIGRTGRAGRKGLALTLVTPREMKHLRSI 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E+ I+  +   + ++ ++   +EK
Sbjct: 359 EQEIKMSIP--SQEVPTIEDVVEK 380


>gi|198423899|ref|XP_002126471.1| PREDICTED: similar to Eukaryotic initiation factor 4A-III
           (Eukaryotic translation initiation factor 4A isoform 3)
           (ATP-dependent RNA helicase eIF4A-3) (ATP-dependent RNA
           helicase DDX48) (DEAD box protein 48) (Eukaryotic
           initiation factor 4A-like NUK-34) (Nucl... [Ciona
           intestinalis]
          Length = 409

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  + +  DV   AQ+GTGKTA+F + +L 
Sbjct: 37  TFDSMGLREDLLRGIYAYGFEKPSAIQQRAIKQITKGRDVIAQAQSGTGKTATFSISVLQ 96

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    ++R  + L+L PTRELA Q+       G   ++     IGG       +KL+ 
Sbjct: 97  MIDT---QLRDTQALVLSPTRELAQQIQKVILALGDYMSVQCHACIGGTNVGEDIRKLDY 153

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++L++DE+D ML+ GF   I ++   +P   Q +
Sbjct: 154 GQHVVSGTPGRVFDMIRRRSLRTRSIKMLILDESDEMLNKGFKEQIYDVYRYLPPAIQVV 213

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 214 LLSATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVDKEEWKFDTLCDL--YD 271

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   +    F+V  +HG++ Q+ R +I+  F+ G  ++++ 
Sbjct: 272 TLTITQAVIFCNTKRKVDWLTEKMRDANFTVLCMHGDMPQKERTEIMKQFRSGESRVLIC 331

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G +   V  +DI+ +  IE
Sbjct: 332 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVSINFVKNDDIRILRDIE 391

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  ++S L
Sbjct: 392 QYYSTQIDEMPMNVSDL 408


>gi|194015931|ref|ZP_03054546.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Bacillus pumilus ATCC 7061]
 gi|194012286|gb|EDW21853.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Bacillus pumilus ATCC 7061]
          Length = 496

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 149/372 (40%), Positives = 223/372 (59%), Gaps = 6/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  LS  ++ A+   G+ + TPIQ +TIPL LQ  DV G AQTGTGKTA+F +P++
Sbjct: 3   ITFQDFQLSESLMKAINRMGFEEATPIQAETIPLGLQNKDVIGQAQTGTGKTAAFGIPLV 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++     I+ PTRELA QV++   K G++    V  + GG     Q + L+
Sbjct: 63  EKIDPASPNIQAI---IIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRSLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+LDH NR  + + N+E +V+DEAD ML+MGFI  I++I S VP   QT
Sbjct: 120 KNPHIIVGTPGRLLDHINRRTMRLQNVETVVLDEADEMLNMGFIEDIESILSNVPSEHQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +++++E F+ NP+ ++V     T   I+         + +K       L 
Sbjct: 180 LLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQ---FYLDIHERKKFDTLTRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM  L  FKEG+I ++V
Sbjct: 237 DIQSPELSIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGSIDVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFDVP   E+Y+HRIGRTGRAGR G A T +   +   + AI
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGRTGMAVTFITPREKDMLRAI 356

Query: 361 EKLIEKKVDWLN 372
           E+  ++K+D + 
Sbjct: 357 EQTTKRKMDRMK 368


>gi|300812076|ref|ZP_07092524.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300496915|gb|EFK31989.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 481

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 147/388 (37%), Positives = 228/388 (58%), Gaps = 11/388 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+  ++ A+  +G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFTELGLNDNILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  +   +  + +++EPTRELA Q  +   + G++ N  V ++ GG     Q + L+
Sbjct: 61  QKLDLDKQE-QAIQAIVIEPTRELAIQTQEELFRLGRDENAKVQVVYGGADIGRQIRALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  ++L+ TPGR+LDH  R  + ++ ++ +V+DEAD MLDMGFI  I++I +      QT
Sbjct: 120 KAPEILVGTPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +Q + E F+ +P+ +++     TA+ I+  FV                  
Sbjct: 180 LLFSATMPKPIQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRL---I 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     ++F   K+ V  L   L  +G++   IHG++ Q  RM++L  FKEG + ++V
Sbjct: 237 DVENPDLAVVFGRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG+ G + T V   +I ++  I
Sbjct: 297 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGMSVTFVTPNEIGYMRTI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           E L +KK       +S L PP +    A
Sbjct: 357 EDLTKKK-------MSPLRPPTDAQAFA 377


>gi|194336034|ref|YP_002017828.1| DEAD/DEAH box helicase domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308511|gb|ACF43211.1| DEAD/DEAH box helicase domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 599

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 137/373 (36%), Positives = 221/373 (59%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  L L+  ++ A+ D GY  PTPIQ +TIPL+L+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MDFLGLQLAEPLMRALADVGYENPTPIQAQTIPLILEGRDVLGQAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + ++   A    P+ L+L PTRELA QVA+ F++Y ++      + I  G  +  Q + L
Sbjct: 61  SNIDLEHAE---PQALVLAPTRELAIQVAEAFQRYAEHLKGFHVVPIYGGQDYGIQLRML 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG  +++ TPGR++DH  RG L + +++ LV+DEAD ML MGFI  ++ I    P  RQ
Sbjct: 118 RRGVHIVVGTPGRVMDHMRRGSLNLASLKCLVLDEADEMLRMGFIDDVEWILDQTPKGRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   ++++++ +L NP  + + T ++T +TI   +      +      +   +
Sbjct: 178 VALFSATMPPVIRRIAQKYLHNPAEVTIQTKTTTVDTIRQRYWIVGGSHK---IDILTRI 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     +IF   K   + L   L+ +G+   A++G++ Q  R + +   K G + ++
Sbjct: 235 LEVEPFDGMLIFVRTKTMTLELAEKLQARGYGAAALNGDMPQNQRERTVDQLKNGALSIV 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  +   + +
Sbjct: 295 IATDVAARGLDVERISHVINYDIPSDTESYVHRIGRTGRAGRAGDAILFVSPREKNMLYS 354

Query: 360 IEKLIEKKVDWLN 372
           IE+    +++ + 
Sbjct: 355 IERATHSRIELME 367


>gi|18309844|ref|NP_561778.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens str. 13]
 gi|18144522|dbj|BAB80568.1| probable ATP-dependent RNA helicase [Clostridium perfringens str.
           13]
          Length = 478

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 130/402 (32%), Positives = 225/402 (55%), Gaps = 6/402 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ A+ + GY  P+ +Q  +IP +L+  D+   +QTG+GKTASF +P+ 
Sbjct: 1   MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVC 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +V+    L+L PTRELA QV D     G+   +  A + G  PF  Q ++L+
Sbjct: 61  EKINIEEKKVQC---LVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIRELK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+ DH  RG L ++ +  +VIDEAD+ML MGFI  I++I   +   + T
Sbjct: 118 QRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT + E++++ E +++NP  +EV +     + IE    +      K          
Sbjct: 178 ALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEE---SAIEIEEKNKEKALWKCL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ I+FCN +  V ++   L+ +G +   +HG+++Q+ R++++ NF++   +++V
Sbjct: 235 YAYHPESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ +  +  V N++VP   E+Y+HRIGRTGRAGR GKA T V   + K+++ +
Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           E+ I  ++  ++           KI         K +  P+K
Sbjct: 355 EEYIGYEIKKVSLPSDEEVKAGRKIFKESQKVQLKESKKPKK 396


>gi|294495760|ref|YP_003542253.1| DEAD/DEAH box helicase [Methanohalophilus mahii DSM 5219]
 gi|292666759|gb|ADE36608.1| DEAD/DEAH box helicase domain protein [Methanohalophilus mahii DSM
           5219]
          Length = 431

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 150/386 (38%), Positives = 228/386 (59%), Gaps = 10/386 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL LS  +  AV D G+ +PTPIQ ++IP +++  DV G AQTGTGKTA+F +P L
Sbjct: 4   LTFKDLNLSKDIERAVEDMGFEEPTPIQSQSIPYLMEGKDVIGQAQTGTGKTAAFGIPAL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+    +V+    L+L PTRELA QVA+   K  K  N  +  + GG P + Q K L 
Sbjct: 64  EMLDVKSKKVQ---VLVLCPTRELANQVAEEMSKLAKYQNTKMLPVYGGQPIDRQIKALR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  ++I TPGRI+DH  R  L +++++++V+DEAD MLDMGF   I+ I S  P  +QT
Sbjct: 121 RGVHIVIGTPGRIMDHLQRKTLKLDDVKMVVLDEADEMLDMGFREDIEFILSRAPGKKQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   + K+++ + QNP+   +        T+       +         +   L 
Sbjct: 181 VLFSATMPKPIIKLTKKYQQNPQ---MVKTVHKKLTVPQIEQYYFEVKDNAKTEVLCRLI 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K+ ++FCN KKNV     +L+ +G+ V  +HG++ Q  R +++SNF++G I+ +V
Sbjct: 238 DIYNFKSSLVFCNTKKNVDKQVETLKARGYLVDGMHGDMRQAQRERVMSNFRKGEIETLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  +  VFN+D+P   E+Y+HRIGRTGRAG+ G A T    +DI+ I  I
Sbjct: 298 ATDVAARGIDVESIEAVFNYDIPQDEESYVHRIGRTGRAGKEGVAITFAFGKDIRKIKTI 357

Query: 361 EKLIEKKVDWLN----GDLSSLNPPL 382
           +K    K+   N     D+  +   +
Sbjct: 358 QKHTNVKIVRKNVPSQSDVEDIRAEM 383


>gi|209447030|ref|NP_001129273.1| probable ATP-dependent RNA helicase DDX27 [Rattus norvegicus]
 gi|169642292|gb|AAI60885.1| Ddx27 protein [Rattus norvegicus]
          Length = 761

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 155/465 (33%), Positives = 245/465 (52%), Gaps = 23/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 184 LTFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 243

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++  +  ++T  L +GG+  ++Q   L 
Sbjct: 244 ERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALR 303

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 304 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 363

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 364 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 423

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 424 LMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 483

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K +  
Sbjct: 484 VATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 543

Query: 360 IEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K  +                  K++ +  D+ ++     +    Q + A+ +      
Sbjct: 544 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEREVQQSEAQIDTAQRLL 603

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
           S G  ++  +   ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 604 SKG--KQTADQEPERSWFQTKEERKKEKIAKALQEFD---LALRG 643


>gi|283784562|ref|YP_003364427.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
 gi|282948016|emb|CBG87580.1| putative ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
          Length = 451

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 160/391 (40%), Positives = 236/391 (60%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P+++ A+ + GY +PTP+Q + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPEILRAIAEQGYREPTPVQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L   +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITQQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D++++++E  L NP  IEV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKRLAEKLLHNPLEIEVARRNTASEQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 QMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKID 386
             IEKL++K++  +   G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRMTTPGYEPDPSIKAEPIQ 388


>gi|330448478|ref|ZP_08312126.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492669|dbj|GAA06623.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 494

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 190/461 (41%), Positives = 270/461 (58%), Gaps = 11/461 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  ++ AV   GY KP+PIQ K IP +L+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLSAPILDAVAKQGYEKPSPIQEKAIPAILEGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G   R    R L+L PTRELAAQV ++   YGKN  ++ A++ GG+    Q  ++
Sbjct: 61  ERLAGGCPARSNHVRALVLTPTRELAAQVGESVATYGKNLRISSAVVFGGVKVNPQMLRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D  ++  +   +IEILV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLHSQNAVKFRDIEILVLDEADRMLDMGFIRDIRKILALLPKERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++++++  + +P  I+VN  + TA T+            KK   L   L
Sbjct: 181 NLLFSATFSDEIRELAKGLVNDPVEIDVNPRNQTARTV---KQWICPVDKKKKPNLLTKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+   K  ++F   K     L   LE +G +  AIHGN  Q +R K L+NFK G I+++
Sbjct: 238 LSERNWKQVLVFTKTKHGANKLSAHLESRGITAAAIHGNKSQGARTKALANFKAGEIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+P+ AE+Y+HRIGRTGRAG  G+A +LV+ ++ K + A
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPHVAEDYVHRIGRTGRAGCEGEAISLVSADEFKELVA 357

Query: 360 IEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE+L ++ ++   ++G   +   P  K+D        K    P+K   F  R+   +S+ 
Sbjct: 358 IERLTQQVLEREIVDGFKPTNALPASKLDT--RPIKPKKPKKPKKDKPFTPREGTTASES 415

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
                +   K +  +   Q NDA   G   N PA   P+N 
Sbjct: 416 RPANNQAKRKPASRRPQGQGNDAKEQG---NKPARSKPRNP 453


>gi|148379740|ref|YP_001254281.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A str. ATCC
           3502]
 gi|153931372|ref|YP_001384037.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A str. ATCC
           19397]
 gi|153936334|ref|YP_001387579.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A str. Hall]
 gi|148289224|emb|CAL83319.1| ATP-dependent RNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152927416|gb|ABS32916.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum A str. ATCC
           19397]
 gi|152932248|gb|ABS37747.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum A str. Hall]
          Length = 481

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 132/429 (30%), Positives = 226/429 (52%), Gaps = 13/429 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  LS +++ ++   GY  P+ +Q + IPL+L+  D+   ++TG+GKTA+F +P+ 
Sbjct: 4   LTFENYKLSDEILKSLGKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPIC 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE      + P+ L+L PTRELA Q+ +          L    + G  P   Q ++L+
Sbjct: 64  EKLEL---EEKDPQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRELK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR LDH  R  L +  I+  V+DEAD ML+MGFI  ++ +   +P  R T
Sbjct: 121 QRVHLVVGTPGRTLDHIERENLNLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRVT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ ++++ + + +       E    +    T        Y    K    L Q + 
Sbjct: 181 MLFSATIPEKVENLCKKY---MNNPENININPENITTGTINQCYYEVEDKDKFYLLQKII 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++ + N IIFCN ++ V  +   ++K+G +   +HG ++Q+ R++ +  FKEG  Q +V
Sbjct: 238 YKEVVDNSIIFCNTREKVDEVLKHMKKKGLNAIGLHGGMEQKDRLETMKKFKEGEFQFLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ I ++ HV N+++P   E+Y+HRIGRTGRAG+ G A T +    ++ +  I
Sbjct: 298 CTDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFLKDI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  IEK++       S      +KI   ++   R    +P+ +      KK     K +I
Sbjct: 358 EDYIEKEIPKRKEPSSEEVAKGKKI-FEENIKNRIKTKVPKDN------KKQKDITKIYI 410

Query: 421 PLKESEKIS 429
                +KI 
Sbjct: 411 SAGRKKKIR 419


>gi|167769379|ref|ZP_02441432.1| hypothetical protein ANACOL_00705 [Anaerotruncus colihominis DSM
           17241]
 gi|167668347|gb|EDS12477.1| hypothetical protein ANACOL_00705 [Anaerotruncus colihominis DSM
           17241]
          Length = 439

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 149/377 (39%), Positives = 227/377 (60%), Gaps = 6/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ AV D GYV+P+ IQ + IP  L  HDV G AQTGTGKTA+F +P+L
Sbjct: 19  MKFEELGLIQPILRAVRDEGYVEPSAIQQQAIPPALAGHDVLGCAQTGTGKTAAFAIPIL 78

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L+   A ++ P  +   +L PTRELA Q+ D+F+ YG+   L   ++ GG+P   Q  
Sbjct: 79  QRLDTQCASIKTPCVIRALVLTPTRELAIQIKDSFQSYGRYMRLRSTVVFGGVPQTPQVD 138

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG D+L+ TPGR+ D   +G + ++++ + V+DEADRMLDMGFI  ++ + + +P  
Sbjct: 139 ELRRGVDILVATPGRLNDLIGQGIIDLSSVSVFVLDEADRMLDMGFIHDVERVINHLPNK 198

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL FSATM   +  + +  L +P ++ V   SS  E IE           ++  +   
Sbjct: 199 RQTLFFSATMPKAIMHLCDRILTDPVKVAVTPVSSPVEAIEQRLYFVDKPNKRRLLIYLL 258

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                 ++ + ++F   K     +   L K G    AIHG+  Q +R + LS FK G I+
Sbjct: 259 ---EDVSIVSALVFTFTKHGADRVARELVKAGIKAQAIHGDKSQGARQRALSAFKNGDIR 315

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++ HVFN+D+PN  E Y+HRIGRTGRAG  G A +  +  +++++
Sbjct: 316 VLVATDIAARGIDIDELSHVFNYDLPNIPETYVHRIGRTGRAGLGGIAISFCSIVEMENL 375

Query: 358 DAIEKLIEKKVDWLNGD 374
            AIEKLI +K+  +  +
Sbjct: 376 HAIEKLIGRKIPVVKEN 392


>gi|187778617|ref|ZP_02995090.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC
           15579]
 gi|187772242|gb|EDU36044.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC
           15579]
 gi|322807112|emb|CBZ04686.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
          Length = 524

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 141/383 (36%), Positives = 225/383 (58%), Gaps = 5/383 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L L+  V+ A+   G+  P+ IQ K+IP+VL+  DV   AQTGTGKT +F  P+++
Sbjct: 5   NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +  + L+L PTRELA Q+ D  ++  K     V  + GG   E Q K ++ 
Sbjct: 65  TL-CDEGKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKS 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR+LDH NR  L +  I+ LV+DEAD ML+MGFI  I+ I +  P  +QT+
Sbjct: 124 GVDIVVGTPGRVLDHINRRTLKLGGIDFLVLDEADEMLNMGFIEDIETIMASTPEEKQTM 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K++ N+++           S                 K  A+ +  +  
Sbjct: 184 LFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICR--IID 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  ++ IIFC  K+ V  L  +++ +G++V  +HG++ Q  R+  L  FK+ T+  +VA
Sbjct: 242 SEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ ++ HV N+D+P  AE+Y+HRIGRTGRA + G A++LV   ++  I  IE
Sbjct: 302 TDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIE 361

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
           ++I+ K+     +L +L   LEK
Sbjct: 362 RIIKSKIT--KKELPTLEDILEK 382


>gi|227891791|ref|ZP_04009596.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
 gi|227866356|gb|EEJ73777.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
          Length = 499

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 168/485 (34%), Positives = 256/485 (52%), Gaps = 49/485 (10%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGL   ++ AV  +G+ + TPIQ +TIPLVL  +DV G AQTGTGKTA+F LP+L
Sbjct: 8   LKFGELGLDKSLLKAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVL 67

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-L 119
             L+    +++     I+ PTRELA Q  +     GK     V ++ GG     Q K+  
Sbjct: 68  QQLDLDLRQIQAV---IISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLE 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +L+ TPGR+LDH  RG + + +++ L++DEAD MLDMGF+  I+ I   VP  RQ
Sbjct: 125 QHTPHILVGTPGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E+ K+ E F+ NP+ +++     T + ++  FV T               
Sbjct: 185 TLLFSATMPKEILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRL--- 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  I+F   K+ V  L   LE +G++   IHG++ Q+ RM +L  FK G + ++
Sbjct: 242 IDVQAPELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDIL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG HG + T V   ++ ++  
Sbjct: 302 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRV 361

Query: 360 IEKLIEKKVDWLNG----------------DLSSL-------------NPPLEKIDIAQH 390
           IEKL +K++D L                  D+  L                LE+ D  + 
Sbjct: 362 IEKLTKKRMDPLKPPTQDEAFIGQVSSALDDIKDLIADTDTERYEAQAQALLEQYDAVEV 421

Query: 391 NHARKNNPIPQKSTG----------FDRRKKNYSS---QKSHIPLKESEKISKLQQDIQE 437
             A  NN   + ++             RRKK   +   ++ +   K S++ +K  ++ ++
Sbjct: 422 VAAFLNNMTKKDASDVPVKITPEKPLPRRKKGRRNGNYRRGNDNFKRSKRFNKHDRNNRD 481

Query: 438 NDADS 442
           N   S
Sbjct: 482 NKRRS 486


>gi|323967399|gb|EGB62820.1| DEAD/DEAH box helicase [Escherichia coli M863]
 gi|327253583|gb|EGE65212.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli STEC_7v]
          Length = 454

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 161/391 (41%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKNLAEKLLHNPLEIEVARRNTASEQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|307278457|ref|ZP_07559532.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
 gi|306504963|gb|EFM74158.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
          Length = 536

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 152/384 (39%), Positives = 229/384 (59%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGL+P+++ AV  AG+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 22  LKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++      R+ + L++ PTRELA Q  +   + G++  + V  + GG     Q + L+
Sbjct: 82  NKIDADN---RVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLK 138

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  +E LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 139 DRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQT 198

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F++ P+ +++     TA+ I+  +V +                
Sbjct: 199 LLFSATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLL--- 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 256 DVQTPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 315

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 316 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVI 375

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       ++ L PP EK
Sbjct: 376 ENLTKKR-------MTPLRPPTEK 392


>gi|29375434|ref|NP_814588.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis V583]
 gi|227520091|ref|ZP_03950140.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX0104]
 gi|227554958|ref|ZP_03985005.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           HH22]
 gi|229546689|ref|ZP_04435414.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX1322]
 gi|229548784|ref|ZP_04437509.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           ATCC 29200]
 gi|293383725|ref|ZP_06629632.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|293388799|ref|ZP_06633292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|307267925|ref|ZP_07549313.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|307271845|ref|ZP_07553113.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|307275145|ref|ZP_07556297.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|307286655|ref|ZP_07566741.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|307290778|ref|ZP_07570673.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|312901614|ref|ZP_07760885.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|312904406|ref|ZP_07763566.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|312907060|ref|ZP_07766056.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|312952884|ref|ZP_07771745.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|312978684|ref|ZP_07790411.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|29342894|gb|AAO80658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis V583]
 gi|227072435|gb|EEI10398.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX0104]
 gi|227175901|gb|EEI56873.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           HH22]
 gi|229306092|gb|EEN72088.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           ATCC 29200]
 gi|229308195|gb|EEN74182.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX1322]
 gi|291078801|gb|EFE16165.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|291081956|gb|EFE18919.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|306498159|gb|EFM67681.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|306502133|gb|EFM71417.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|306508173|gb|EFM77291.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|306511351|gb|EFM80353.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|306515566|gb|EFM84093.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|310627045|gb|EFQ10328.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|310629187|gb|EFQ12470.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|310632233|gb|EFQ15516.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|311288391|gb|EFQ66947.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|311291302|gb|EFQ69858.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|315027034|gb|EFT38966.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
 gi|315029211|gb|EFT41143.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
 gi|315032370|gb|EFT44302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
 gi|315034370|gb|EFT46302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
 gi|315145185|gb|EFT89201.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
 gi|315148006|gb|EFT92022.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
 gi|315149607|gb|EFT93623.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
 gi|315153133|gb|EFT97149.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
 gi|315155152|gb|EFT99168.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
 gi|315158764|gb|EFU02781.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
 gi|315163093|gb|EFU07110.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
 gi|315165079|gb|EFU09096.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
 gi|315167890|gb|EFU11907.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
 gi|315171750|gb|EFU15767.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
 gi|315174909|gb|EFU18926.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
 gi|315574115|gb|EFU86306.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
 gi|315577243|gb|EFU89434.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
 gi|315581764|gb|EFU93955.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
 gi|327534429|gb|AEA93263.1| ATP-dependent RNA helicase DeaD [Enterococcus faecalis OG1RF]
          Length = 536

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 152/384 (39%), Positives = 229/384 (59%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGL+P+++ AV  AG+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 22  LKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++      R+ + L++ PTRELA Q  +   + G++  + V  + GG     Q + L+
Sbjct: 82  NKIDADN---RVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLK 138

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  +E LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 139 DRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQT 198

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F++ P+ +++     TA+ I+  +V +                
Sbjct: 199 LLFSATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLL--- 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 256 DVQTPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 315

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 316 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVI 375

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       ++ L PP EK
Sbjct: 376 ENLTKKR-------MTPLRPPTEK 392


>gi|253990397|ref|YP_003041753.1| ATP-dependent RNA helicase RhlE [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781847|emb|CAQ85010.1| putative atp-dependent rna helicase rhle [Photorhabdus asymbiotica]
          Length = 444

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 172/432 (39%), Positives = 247/432 (57%), Gaps = 10/432 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   ++CA+ + GY  PTPIQ + IP+VL   D+   AQTGTGKTA F LPML
Sbjct: 1   MSFESLGLDADILCAIEEQGYSAPTPIQQQAIPVVLAGKDLLASAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L     +    R  R LIL PTRELAAQV +N   Y K   L   ++ GG+    Q  
Sbjct: 61  QLLNNSPVQTKGRRPVRALILTPTRELAAQVGENVRNYSKYLRLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVDLSRVEILVLDEADRMLDMGFIHDIRRVLNKLPPK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L NP  +EV   +S +E I       +    K+   L  
Sbjct: 181 RQNLLFSATFSDEIKNLASKLLHNPVSVEVARRNSASEQI---EQFVHFVDKKRKGELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L      +  ++F   K     L   L K G +  AIHGN  Q +R + L++FKEG I+
Sbjct: 238 FLIGSRNWQQVLVFTRTKHGANRLAEQLNKDGVTASAIHGNKSQGARTRALADFKEGRIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + +V NF++PN +E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPYVVNFELPNVSEDYVHRIGRTGRADATGQALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE+L+++++  +       +P ++   I     AR +N    +     RR    S Q+
Sbjct: 358 KDIERLLKREIPRVAIPGYDPDPTIKAEPIQNGRQARGDN----RQKNSHRRSGAPSRQR 413

Query: 418 SHIPLKESEKIS 429
           SH     S K S
Sbjct: 414 SHNRADVSNKAS 425


>gi|71908923|ref|YP_286510.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71848544|gb|AAZ48040.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 507

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 150/377 (39%), Positives = 232/377 (61%), Gaps = 8/377 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL+P+++ AVLD GY KPTPIQ + IPLV+   D+ G AQTGTGKTA+F LP+L
Sbjct: 23  ITFADLGLAPELLRAVLDEGYTKPTPIQAQAIPLVISGKDIMGGAQTGTGKTAAFTLPIL 82

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             +    +    P        IL PTRELA QV ++ + Y K+  +      GG+    Q
Sbjct: 83  QRILPFASSSPSPAKHPVRALILAPTRELAMQVFESVKTYSKHTPIRAMCAYGGVDIRPQ 142

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L++G ++L+ TPGR+LDH     +  N+++ LV+DEADRMLDMGF+P +  I +++P
Sbjct: 143 IAELKKGVEILVATPGRLLDHVENKSVSFNSVQALVLDEADRMLDMGFVPDVTRILNMLP 202

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ+LLFSAT ++E++K+++  L++P  IEV   +  ++TI H          +     
Sbjct: 203 AQRQSLLFSATFSEEIKKLADTMLKSPILIEVARRNQVSDTITHRVHPVSEYGKRGLLTK 262

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                    ++  I+FC  K+    L   L++ G    AIHG+  Q  R+K L  FK G 
Sbjct: 263 LL---KSGEIRQCIVFCRTKQGCSRLTRELQRAGIKADAIHGDKSQLERIKALEAFKGGE 319

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
              ++A+D+AARGLD+ D+ +V N+++P+  E+Y+HRIGRTGRAG+ G A +LV+  ++ 
Sbjct: 320 TDALIATDVAARGLDVDDLPYVINYELPHTPEDYVHRIGRTGRAGKKGNAISLVSAHEVC 379

Query: 356 HIDAIEKLIEKKVDWLN 372
           ++  IEKLI++ ++ + 
Sbjct: 380 YLVDIEKLIKRPIEQVE 396


>gi|332687106|ref|YP_004456880.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311]
 gi|332371115|dbj|BAK22071.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311]
          Length = 502

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 151/383 (39%), Positives = 228/383 (59%), Gaps = 13/383 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS +++ A+  +G+ + TPIQ +TIPL L+  DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKELGLSSQLLLAIERSGFEEATPIQAETIPLALKGKDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++    +++    L++ PTRELA Q  +   + G++  + +  + GG     Q + L+
Sbjct: 61  EKIDTKNQKLQ---GLVIAPTRELAIQTQEELYRLGRDKKIKIQAVYGGADIGRQIRALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  IE LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 ERPQIVVGTPGRLLDHLNRRTLKLEVIETLVLDEADEMLNMGFLEDIEKIISQVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F++NP  +++     TA+ I+  +V +                
Sbjct: 178 LLFSATMPTAIKNIGIKFMKNPDHVKIKAKEMTADLIDQYYVRSKDYEKFDIMTRLL--- 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L  FK G + ++V
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRAFKNGDLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           E L +K+       +S+L PP E
Sbjct: 355 EDLTKKR-------MSTLRPPTE 370


>gi|296200672|ref|XP_002747679.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Callithrix
           jacchus]
          Length = 764

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 156/465 (33%), Positives = 243/465 (52%), Gaps = 23/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 186 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 245

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     R  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 246 ERLIYKPRRGPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEVALR 305

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 306 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 365

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 366 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 425

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 426 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQMQRLEALRRFKDEQIDIL 485

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 486 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 545

Query: 360 IEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K  +                  K++ +  D+ ++     +    Q + A+ N      
Sbjct: 546 IVKAAKAPVKARILPQDVVLKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLL 605

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             G +   +    ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 606 EKGKEAVVQE--PERSWFQTKEERKKEKIAKALQEFD---LALRG 645


>gi|260866964|ref|YP_003233366.1| RNA helicase RhlE [Escherichia coli O111:H- str. 11128]
 gi|257763320|dbj|BAI34815.1| RNA helicase RhlE [Escherichia coli O111:H- str. 11128]
 gi|323175585|gb|EFZ61180.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1180]
          Length = 454

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 232/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I 
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIC 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|193069347|ref|ZP_03050302.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E110019]
 gi|192957300|gb|EDV87748.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E110019]
          Length = 454

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARCNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|189426565|ref|YP_001953742.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
 gi|189422824|gb|ACD97222.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 436

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 157/449 (34%), Positives = 246/449 (54%), Gaps = 25/449 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGL P+++ A+   GY  PTPIQ + IP++ +  D+   AQTGTGKTA+F LP++
Sbjct: 6   VSFDSLGLRPELLSAITSLGYTSPTPIQAEAIPVIFEGCDLLAGAQTGTGKTAAFALPIV 65

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +        + R PR L+L PTRELAAQV+D   +Y +  +L   ++ GG+  +AQ ++
Sbjct: 66  QMLAETTPAEKRRKPRALVLVPTRELAAQVSDEMNRYARRLSLRSTMIYGGVTIQAQIER 125

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+++ TPGR+LDH  RG + ++ I+ LV+DEADRMLD+GFI  I+ +   +P   
Sbjct: 126 LHRGVDIVVATPGRLLDHAERGTIDLSRIKFLVLDEADRMLDLGFIDEIKKVAEYLPAKH 185

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  ++++++  L  PKR+EV   + TAE +            +    +   
Sbjct: 186 QALLFSATYSQNIKQLADQLLDQPKRVEVARRTLTAEAVTQAVYQVERSRKR---EMLSF 242

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  ++     ++F   +     L   L   G    AIH N  Q  R + L+ FK+G  ++
Sbjct: 243 LIRKNGWNQVLVFTRTRYGADKLTEELLFDGIKAAAIHSNKSQSIRTRTLAEFKQGAFRV 302

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV N+D+P   E+Y+HRIGRTGRAG  G A +LV++E+   + 
Sbjct: 303 LVATDVAARGLDIERLPHVVNYDLPQVPEDYVHRIGRTGRAGEEGIAISLVSQEEQILLA 362

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           AIEKL+++ +            P + +        R+     +     ++ K   +  K+
Sbjct: 363 AIEKLVKQSI------------PRQSLAEFPQYAVRRTVKAKEGKLAKEQAKPKKTEVKA 410

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRG 447
             P        K ++ + E  A   G RG
Sbjct: 411 ATP--------KRKKVVPERPAPKTGRRG 431


>gi|218261592|ref|ZP_03476346.1| hypothetical protein PRABACTJOHN_02014 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223947|gb|EEC96597.1| hypothetical protein PRABACTJOHN_02014 [Parabacteroides johnsonii
           DSM 18315]
          Length = 419

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 156/422 (36%), Positives = 241/422 (57%), Gaps = 8/422 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L   +  A+    Y  PTPIQ + IPLVL   D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFEQLELIEPIRKALKKEKYTTPTPIQAEAIPLVLDGSDLLGCAQTGTGKTAAFSIPII 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +E+  +    P     +L PTRELA Q+ ++F  YG   ++   ++ GG+  + Q   
Sbjct: 61  QKIEEQISSRCKPGIKALVLTPTRELAIQIGESFTAYGCYTHVKHTVIFGGVGQKPQTDA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG DVLI TPGR+LD  ++G + ++ +E  V+DEADRMLDMGFI  I+ I  L+P  R
Sbjct: 121 LERGVDVLIATPGRLLDLLSQGFIRLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+++++   L  P+++EV   SST +TI+                  + 
Sbjct: 181 QSLFFSATMPPEIERLAGTILHEPEKVEVTPVSSTVDTIDQSVYFVEKVEKINL---LKN 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L    ++++ ++F   K     +   L K G    AIHG+  Q +R + LS+FK+ T+++
Sbjct: 238 LLEDRSLESVLVFTRTKYGADKVARVLNKSGIGAEAIHGDKGQNARQRALSSFKDHTLRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RG+D+  + HV N+D+PN  E Y+HRIGRTGRAGR G AF+    E++ ++ 
Sbjct: 298 LIATDIASRGIDVDHLSHVINYDLPNVPETYVHRIGRTGRAGRSGIAFSFCDVEEVPYLK 357

Query: 359 AIEKLIEKKVDWLNG---DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            I+KLI K V    G   + + +   + +   A    +++ N    K  G   R K  ++
Sbjct: 358 DIQKLIGKDVPVAGGHMFETAEVKEAVAEKKKAMKEESKRRNMFGNKRDGSFWRNKKRTA 417

Query: 416 QK 417
            K
Sbjct: 418 NK 419


>gi|332289496|ref|YP_004420348.1| ATP-dependent RNA helicase DeaD [Gallibacterium anatis UMN179]
 gi|330432392|gb|AEC17451.1| ATP-dependent RNA helicase DeaD [Gallibacterium anatis UMN179]
          Length = 590

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 155/491 (31%), Positives = 255/491 (51%), Gaps = 42/491 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGL   ++ A+ D G++ P+PIQ   IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 1   MTFADLGLPENLLSAISDLGFINPSPIQQACIPHLLNGEDVLGMAQTGSGKTAAFALPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + ++      + P+ L++ PTRELA QVAD  E++ KN      + +  G  ++ Q + L
Sbjct: 61  SKIDL---DKKYPQLLVMAPTRELAIQVADACEQFAKNLKGINIVTVYGGQRYDIQLRAL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  R  L ++ ++ +V+DEAD ML MGFI  ++ + + +P + Q
Sbjct: 118 KQGAQVVVGTPGRILDHIRRKTLDLSALKAIVLDEADEMLRMGFIEDVETVMAELPESHQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F++ P+ I++ +   TA  I   +           +      
Sbjct: 178 TALFSATMPEPIRRITRRFMREPQEIKIQSTQQTAPDITQSYWFVNGFKK---SEALVRF 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     I+F   K     +   LE+ GF   A++G++ Q+ R + L   + G + ++
Sbjct: 235 LEVEEFDAAIVFTRTKTGTTEVTDLLERNGFRCAALNGDMTQQLREQTLDKLRNGRLDIV 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P   E+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 295 VATDVAARGIDIDRISLVVNYDIPLDPESYVHRIGRTGRAGRAGRALLFVEAREKRLLRN 354

Query: 360 IEKLIEKKVDWLNG-------------------------DLSSLNPPLEKI---DIAQHN 391
           IE+L++K VD +                           DL      LE I   D +Q +
Sbjct: 355 IERLMKKTVDEVQIPNHEQLQQVRRDKFRQRITAQLEHHDLDQYRSLLEDIFAADQSQED 414

Query: 392 HARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQEND--ADSLGFRGNM 449
            A     + Q      ++K          P +   +  +  ++ +EN   A+  G R  +
Sbjct: 415 IAAAMMMLLQG-----KQKLILPPDPEIKPARRENRRDRADRERKENPRSAERRGVRNEL 469

Query: 450 PAFMLPKNRGK 460
           P  +     G+
Sbjct: 470 PMDLYRIEVGR 480


>gi|104773512|ref|YP_618492.1| DEAD-box ATP dependent DNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116513507|ref|YP_812413.1| superfamily II DNA/RNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103422593|emb|CAI97196.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116092822|gb|ABJ57975.1| Superfamily II DNA and RNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|325125143|gb|ADY84473.1| ATP-dependent RNA helicase-like protein [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 483

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 146/388 (37%), Positives = 227/388 (58%), Gaps = 11/388 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+  ++ A+  +G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFTELGLNDNILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  +   +  + +++EPTRELA Q  +   + G++    V ++ GG     Q + L+
Sbjct: 61  QKLDLDKQE-QAIQAIVIEPTRELAIQTQEELFRLGRDEKAKVQVVYGGADIGRQIRDLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  ++L+ TPGR+LDH  R  + ++ ++ +V+DEAD MLDMGFI  I++I +      QT
Sbjct: 120 KVPEILVGTPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +Q + E F+ +P+ +++     TA+ I+  FV                  
Sbjct: 180 LLFSATMPKPIQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRL---I 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     ++F   K+ V  L   L  +G++   IHG++ Q  RM++L  FKEG + ++V
Sbjct: 237 DVENPDLAVVFGRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG+ G + T V   +I ++  I
Sbjct: 297 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGMSVTFVTPNEIGYMRTI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           E L +KK       +S L PP +    A
Sbjct: 357 EDLTKKK-------MSPLRPPTDAQAFA 377


>gi|15223841|ref|NP_175549.1| eukaryotic translation initiation factor 4A, putative / eIF-4A,
           putative [Arabidopsis thaliana]
 gi|108861889|sp|Q9C8J1|RH34_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 34
 gi|4836949|gb|AAD30651.1|AC006085_24 RNA helicase [Arabidopsis thaliana]
 gi|16604541|gb|AAL24276.1| At1g51380/F11M15_24 [Arabidopsis thaliana]
 gi|18958046|gb|AAL79596.1| At1g51380/F11M15_24 [Arabidopsis thaliana]
 gi|332194539|gb|AEE32660.1| DEAD-box ATP-dependent RNA helicase 34 [Arabidopsis thaliana]
          Length = 392

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 132/374 (35%), Positives = 201/374 (53%), Gaps = 5/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+G++ KV+  V D GY KP+ IQ + +  +L+  DV   AQ+GTGKT+   + +  
Sbjct: 23  SFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQ 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I+     +V++   L+L P+RELA+Q     +  G + N+     IGG       KKLER
Sbjct: 83  IVNISSRKVQV---LVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLER 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G   +  TPGR+ D   RG L    +++LV+DE+D ML  G    I ++   +P   Q  
Sbjct: 140 GVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVC 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++E F+ +P RI V     T E I+  +V    +  K   L       
Sbjct: 200 LISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDL--YG 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T+   IIFCN ++ V  L   +    F V ++HG+  Q+ R  I++ F+    ++++A
Sbjct: 258 RLTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIA 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+ ARG+D+  V HV N+D+PN  E YIHRIGR GR GR G A   V   D+K +  IE
Sbjct: 318 SDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKDIE 377

Query: 362 KLIEKKVDWLNGDL 375
           +    K+  +  DL
Sbjct: 378 RHYGTKIREMPADL 391


>gi|222056385|ref|YP_002538747.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32]
 gi|221565674|gb|ACM21646.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32]
          Length = 443

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 158/458 (34%), Positives = 242/458 (52%), Gaps = 23/458 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F      P +  AV +AGYV PTPIQ + IP V+   DV G+AQTGTGKTA+FVLP+L
Sbjct: 1   MNFQLFNFHPLISAAVKEAGYVTPTPIQTQAIPPVMDGKDVMGLAQTGTGKTAAFVLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +G       R LI+ PTRELA Q+ +     G+   L  A + GG+    Q +KL 
Sbjct: 61  QRLMEGPR--GRVRALIIAPTRELAEQIHEAITVLGQQTRLKSATVYGGVNINPQIQKLR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G ++++  PGR+LDH  +  + ++++E+LV+DEAD+M DMGF+P I+ I   +P  RQT
Sbjct: 119 NGVEIVVACPGRLLDHMGQRTIDLSHLEVLVLDEADQMFDMGFLPDIRRILGQLPKKRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  ++++++   L NP  ++V + +         +  +    +     L +   
Sbjct: 179 LLFSATMPPDIKRLAGEILHNPVTVQVGSTAPPVTVNHAIYPVSQHLKTPLLLELLRHTD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++F   K     +   LEK G+   ++ GN+ Q  R   L  F++G+ Q++V
Sbjct: 239 K----QSVLVFTKTKHRAKRVGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGSFQILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+D+ ++AE YIHRIGRTGRA R G AFTLV  ED   +  I
Sbjct: 295 ATDIAARGIDVTQISHVVNYDITDKAETYIHRIGRTGRASRSGDAFTLVTAEDTAMVRTI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EK              +L  PLE+  +   ++   N P P +   F R  +    +K   
Sbjct: 355 EK--------------ALGAPLERRTVEGFDY---NVPAPHRDAEFARPPRTPQVRKQPK 397

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
               + K +   +  Q     + G  G        + R
Sbjct: 398 AKPAANKSAAPAKGGQPAKQVAAGHPGKEARPGASRQR 435


>gi|87198262|ref|YP_495519.1| DEAD/DEAH box helicase-like [Novosphingobium aromaticivorans DSM
           12444]
 gi|87133943|gb|ABD24685.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 498

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 170/490 (34%), Positives = 250/490 (51%), Gaps = 26/490 (5%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M  F+DLGL+  ++ A+   GY  PTPIQ + IP +L+  D+ GIAQTGTGKTA+F LP 
Sbjct: 1   MSYFSDLGLAEPILRALETKGYNDPTPIQRQAIPALLEGRDLLGIAQTGTGKTAAFALPS 60

Query: 60  LTI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L          +    R L+L PTRELAAQ+ADN + Y +N NL V  + GG+P   Q +
Sbjct: 61  LHRLAANPQPRKPASCRMLVLSPTRELAAQIADNMKGYARNLNLIVDCVFGGVPIGKQAR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G D+L+ TPGR+LD  +   L +   EI V+DEAD+M+D+GFI  ++ + +L+P T
Sbjct: 121 RLVPGVDILVATPGRLLDLIDNRALTLGRTEIFVLDEADQMMDLGFIHALKRVANLLPKT 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK-CALLQ 236
           RQ+L FSATM   ++ + + F+ NP R+EV   S+TAE +E           +    L  
Sbjct: 181 RQSLFFSATMPKAIEDLGKQFIVNPVRVEVAPNSTTAERVEQYVTFINQAEKQALLTLRI 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + L     +   ++F   K     +   L   G    AIHGN  Q  R   L  F++G+ 
Sbjct: 241 RDLLKTKELDRALVFTRTKHGADRVVRHLSSAGIDARAIHGNKSQAQRTAALEAFRQGSC 300

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+D+  V HVFNF++PN  E Y+HRIGRT RAG  G A +  A ++  +
Sbjct: 301 PVLVATDIAARGIDVSGVSHVFNFELPNVPEQYVHRIGRTARAGADGIAISFCAPDEKPY 360

Query: 357 IDAIEKLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIPQ--------- 401
           +  IE+L   KVD L        + + L  P  K    + +  R                
Sbjct: 361 LKDIERLTRVKVDALPLPENFTAEAAKLPAPSRKPAEQEQDARRDARDARGNGGRGGQGR 420

Query: 402 ------KSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFR-GNMPAFML 454
                 ++ G D R ++ S ++           + L  D  +      G R GN P    
Sbjct: 421 GQAHGGRAQGRDGRPRDASPRQDRREGDRGPVRNPLHTDRTDRPERIEGERDGNKPRRFR 480

Query: 455 PKNRGKLNDK 464
           P+    +   
Sbjct: 481 PRGAPGVGAH 490


>gi|315644143|ref|ZP_07897313.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315280518|gb|EFU43807.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 481

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 145/424 (34%), Positives = 229/424 (54%), Gaps = 18/424 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS ++  A+   GY  PT +Q + IP+ L++ D+   +QTG+GKTA++ +P+   
Sbjct: 6   FTDYPLSEEIRRALDSLGYTTPTEVQTEVIPVALEKRDLVVKSQTGSGKTAAYGIPLCEQ 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ LIL PTRELA QV ++    G+   +    L G  PF  Q  +L++ 
Sbjct: 66  VEWNENK---PQALILTPTRELALQVNEDITNIGRFKRIKATPLYGRHPFHMQKAELKQR 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  RG L ++ I  LVIDEAD ML+MGFI  +Q+I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIERGSLSLDRISHLVIDEADEMLNMGFIEQVQSIIQALPRNRVTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT  +++ K++  ++ +P++IE+     T  TI+H   A           + Q L   
Sbjct: 183 FSATFPEDVAKLAHKYMNHPEQIEIKASGLTTATIDH---AQVQVKEADKLAVLQNLLIT 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
               + I+FC  +++V  L  +L   G+    IHG ++Q  R +++  F+ G  + ++A+
Sbjct: 240 TNPDSCIVFCRTQEHVDTLFRALADLGYPCDRIHGGMEQEERFEVMHAFRRGQFRYLIAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG+ G A TLV   D   +  IE 
Sbjct: 300 DVAARGIDISNITHVINYDIPLEKESYVHRTGRTGRAGQTGSAITLVTPRDSGRLADIEA 359

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR------KKNYSSQ 416
            I   +  +        P  EK+D  +    RK N  P+       +      K N++  
Sbjct: 360 YIGFAIPKMTA------PSEEKVDECREAFERKLNIRPKLKKDKREQLNQQIMKLNFNGG 413

Query: 417 KSHI 420
           K   
Sbjct: 414 KKKK 417


>gi|16264922|ref|NP_437714.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
           1021]
 gi|15141061|emb|CAC49574.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
           1021]
          Length = 503

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 163/460 (35%), Positives = 250/460 (54%), Gaps = 4/460 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  +V  +   G+ KPTPIQ + IPLVL+ HD+ G+AQTGTGKTA+F LPM+ 
Sbjct: 3   TFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIE 62

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L     R   R  R L+L PTREL  Q+A N + + K   L + L++GG+    Q ++L
Sbjct: 63  KLVADGRRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD  +R  + +     LV+DEAD+MLD+GFI  ++ I+ LVP  RQ
Sbjct: 123 ARGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKNRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + +++  +L +P ++EV+ P   A+ +E        +  K      +  
Sbjct: 183 TLLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTI--LKQT 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +     +IF   K     L   L+  GF   +IHGN  Q  R + L  F++G I+++
Sbjct: 241 LTANPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V HV+N+D+P   + Y+HRIGRT R GR G A    A ++I+ +  
Sbjct: 301 VATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRD 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IEKL+  ++   +G+  +      K    + N   + N  P+ +    R+      +   
Sbjct: 361 IEKLMGIQIAVASGEAPADQARPSKGRGGRGNGQPRGNGQPRGNGAGQRQGGPRRDRPQR 420

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRG 459
                     +L +D + ++       G+ PA   P+   
Sbjct: 421 QAAAGGFAGDELLRDERSHERRDQRAAGHGPADGRPEGHR 460


>gi|89072882|ref|ZP_01159439.1| putative ATP-dependent RNA helicase RhlE [Photobacterium sp. SKA34]
 gi|89051404|gb|EAR56859.1| putative ATP-dependent RNA helicase RhlE [Photobacterium sp. SKA34]
          Length = 496

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 188/473 (39%), Positives = 269/473 (56%), Gaps = 26/473 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  ++ AV   GY KP+PIQ + IP +L   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLSAPILEAVAKQGYEKPSPIQEQAIPAILAGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  GR  R    R L+L PTRELAAQV ++   Y KN  L+ A++ GG+    Q  ++
Sbjct: 61  ERLANGRPARSNHVRALVLTPTRELAAQVGESVATYSKNLRLSSAVVFGGVKVNPQMLRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D  ++  +   ++EILV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLHSQNAVKFRDVEILVLDEADRMLDMGFIRDIRKILALLPKERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++++++  + NP  I+VN  + TA T++           KK   L   L
Sbjct: 181 NLLFSATFSDEIRELAKGLVSNPVEIDVNPRNQTARTVKQWICPVDQ---KKKPNLLTKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   K  ++F   K     L   LE +G S  AIHGN  Q +R K L+NFK G I+++
Sbjct: 238 LNKRNWKQVLVFTKTKHGANKLATHLESRGISAAAIHGNKSQGARTKALANFKSGDIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+P+ AE+Y+HRIGRTGRAG  G+A +LV+ E+ K + A
Sbjct: 298 VATDIAARGLDIEQLPQVVNFDLPHVAEDYVHRIGRTGRAGCVGEAISLVSAEEAKDLAA 357

Query: 360 IEKLIEK--KVDWLNGDLSSLNPPLEKID---------------IAQHNHARKNNPIPQK 402
           IE+L ++  + + + G   +   P  K+D               +A+   A         
Sbjct: 358 IERLTQQVFEREIIEGFKPTNALPQSKLDTRPIKPKKPKKQKTFVARDGGATGEKRSANN 417

Query: 403 STGFDR----RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
           +TG  R    R+    S  +    K SE+ ++  +  +  DA      G+ P 
Sbjct: 418 NTGAKRKPASRRPQGQSADAANNEKRSEQGARPARKPRNTDAKPQS-NGDQPR 469


>gi|254445656|ref|ZP_05059132.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198259964|gb|EDY84272.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 426

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 159/375 (42%), Positives = 231/375 (61%), Gaps = 8/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  A+ + G+ KPTPIQ + IP+VL+  D+ G AQTGTGKTA+F LP+L
Sbjct: 28  MPFSGLGLSEPINKALSELGFEKPTPIQEQAIPIVLEGRDLIGSAQTGTGKTAAFGLPIL 87

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +  G    +  + LILEPTRELAAQV +    + KN  + + L+ GG+ +  Q K +E
Sbjct: 88  QRIVPG----KPFQCLILEPTRELAAQVEEALTVFAKNLGIKIGLIYGGVKYGGQLKMME 143

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY-IQNITSLVPFTRQ 179
            GA++++ TPGR+LDH  +G L +  ++ LV+DE DRMLDMGF+P   + + +     RQ
Sbjct: 144 GGAEIIVATPGRLLDHLGQGNLSLKQMDYLVLDEVDRMLDMGFLPDVKRIVQNYCSAERQ 203

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLF+ATM   ++ ++   L+NP  +E+    S AET+ H   A Y    ++   L   L
Sbjct: 204 TLLFTATMPAAIKTLTGWVLKNPAVVEIGKNRSAAETVSH---AFYPVVERQKYKLLLEL 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ +IF   K N   +   LE+    V A+H +  Q  R   L  FK+G  +++
Sbjct: 261 LERTHYESVLIFTRTKFNADMITRRLERLDHKVAALHSDRSQSERTAALKGFKDGRYEVL 320

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV N+DVP  AE+Y+HRIGRTGRA + G AFTL+ ++++K+  A
Sbjct: 321 VATDIAARGLDIAGVTHVINYDVPLHAEDYVHRIGRTGRASKEGDAFTLLTEDEVKNAAA 380

Query: 360 IEKLIEKKVDWLNGD 374
           IE  I KKV+    D
Sbjct: 381 IEHFIGKKVERKKLD 395


>gi|251764757|sp|B5FZY7|IF4A3_TAEGU RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|197128100|gb|ACH44598.1| putative DEAD box polypeptide 48 [Taeniopygia guttata]
          Length = 410

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 38  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 97

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 98  CLDI---QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 154

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 155 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 214

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 215 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 272

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 273 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 332

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 333 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 392

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 393 QYYSTQIDEMPMNVADL 409


>gi|114794619|pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
 gi|114794620|pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
 gi|114794621|pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
 gi|114794622|pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
          Length = 391

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 17  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 76

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 77  CLDI---QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 134 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 194 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 252 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 312 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 371

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 372 QYYSTQIDEMPMNVADL 388


>gi|114794629|pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
           Trapped Dead-Box Helicase Bound To Rna
 gi|114794633|pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
           Trapped Dead-Box Helicase Bound To Rna
 gi|217035449|pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
 gi|217035453|pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
          Length = 413

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 99  CLDI---QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 216 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 274 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 334 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 393

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 394 QYYSTQIDEMPMNVADL 410


>gi|114794876|pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
           A Resolution
 gi|114794877|pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
           A Resolution
 gi|116668327|pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
           A Resolution
          Length = 410

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 38  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 97

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 98  CLDI---QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 154

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 155 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 214

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 215 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 272

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 273 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 332

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 333 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 392

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 393 QYYSTQIDEMPMNVADL 409


>gi|71897163|ref|NP_001025820.1| eukaryotic initiation factor 4A-III [Gallus gallus]
 gi|82197884|sp|Q5ZM36|IF4A3_CHICK RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|53127756|emb|CAG31207.1| hypothetical protein RCJMB04_3e17 [Gallus gallus]
          Length = 412

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 40  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 99

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 100 CLDI---QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 156

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 157 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 216

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 217 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 274

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 275 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 334

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 335 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 394

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 395 QYYSTQIDEMPMNVADL 411


>gi|40788956|dbj|BAA04879.2| KIAA0111 [Homo sapiens]
          Length = 412

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 40  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 99

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 100 CLDI---QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 156

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 157 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 216

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 217 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 274

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 275 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 334

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 335 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 394

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 395 QYYSTQIDEMPMNVADL 411


>gi|60652753|gb|AAX29071.1| DEAD box polypeptide 48 [synthetic construct]
          Length = 412

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 99  CLDI---QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 216 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 274 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 334 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 393

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 394 QYYSTQIDEMPMNVADL 410


>gi|114051321|ref|NP_001039653.1| eukaryotic initiation factor 4A-III [Bos taurus]
 gi|154147644|ref|NP_001093663.1| eukaryotic initiation factor 4A-III [Sus scrofa]
 gi|157821621|ref|NP_001093628.1| eukaryotic initiation factor 4A-III [Rattus norvegicus]
 gi|126308661|ref|XP_001370945.1| PREDICTED: similar to Chain C, Structure Of The Human Exon Junction
           Complex With A Trapped Dead-Box Helicase Bound To Rna
           [Monodelphis domestica]
 gi|109825494|sp|Q2NL22|IF4A3_BOVIN RecName: Full=Eukaryotic initiation factor 4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|123780398|sp|Q3B8Q2|IF4A3_RAT RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|251764755|sp|A6M931|IF4A3_PIG RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|77748037|gb|AAI05876.1| Eukaryotic translation initiation factor 4A, isoform 3 [Rattus
           norvegicus]
 gi|84708898|gb|AAI11185.1| Eukaryotic translation initiation factor 4A, isoform 3 [Bos taurus]
 gi|85792296|gb|ABC84196.1| eukaryotic translation initiation factor 4A isoform 3 [Sus scrofa]
 gi|149054966|gb|EDM06783.1| rCG33565, isoform CRA_a [Rattus norvegicus]
 gi|296476097|gb|DAA18212.1| eukaryotic initiation factor 4A-III [Bos taurus]
          Length = 411

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 99  CLDI---QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 216 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 274 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 334 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 393

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 394 QYYSTQIDEMPMNVADL 410


>gi|73964736|ref|XP_533130.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 48
           isoform 1 [Canis familiaris]
          Length = 411

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 99  CLDI---QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 216 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 274 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 334 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 393

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 394 QYYSTQIDEMPMNVADL 410


>gi|7661920|ref|NP_055555.1| eukaryotic initiation factor 4A-III [Homo sapiens]
 gi|109118862|ref|XP_001110130.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Macaca
           mulatta]
 gi|297701955|ref|XP_002827960.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Pongo abelii]
 gi|332263899|ref|XP_003280987.1| PREDICTED: eukaryotic initiation factor 4A-III [Nomascus
           leucogenys]
 gi|20532400|sp|P38919|IF4A3_HUMAN RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           initiation factor 4A-like NUK-34; AltName:
           Full=Eukaryotic translation initiation factor 4A isoform
           3; AltName: Full=Nuclear matrix protein 265; Short=NMP
           265; Short=hNMP 265
 gi|295982193|pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
           Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
           Machinery
 gi|295982194|pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
           Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
           Machinery
 gi|13177790|gb|AAH03662.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo
           sapiens]
 gi|13325146|gb|AAH04386.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo
           sapiens]
 gi|15029856|gb|AAH11151.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo
           sapiens]
 gi|48145617|emb|CAG33031.1| DDX48 [Homo sapiens]
 gi|60655857|gb|AAX32492.1| DEAD-box polypeptide 48 [synthetic construct]
 gi|119609990|gb|EAW89584.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, isoform CRA_a [Homo
           sapiens]
 gi|119609991|gb|EAW89585.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, isoform CRA_a [Homo
           sapiens]
 gi|158254648|dbj|BAF83297.1| unnamed protein product [Homo sapiens]
 gi|168274374|dbj|BAG09607.1| eukaryotic initiation factor 4A-III [synthetic construct]
          Length = 411

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 99  CLDI---QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 216 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 274 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 334 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 393

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 394 QYYSTQIDEMPMNVADL 410


>gi|58336606|ref|YP_193191.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           NCFM]
 gi|227903163|ref|ZP_04020968.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus acidophilus
           ATCC 4796]
 gi|58253923|gb|AAV42160.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           NCFM]
 gi|227869149|gb|EEJ76570.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus acidophilus
           ATCC 4796]
          Length = 495

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 146/382 (38%), Positives = 226/382 (59%), Gaps = 14/382 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+  ++ A+  +G+ + TPIQ +TIPL L+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLNEALLKAIKRSGFEEATPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-L 119
            I++K   + +  + +I+EPTRELA Q  +   + G++    V ++ GG     Q +   
Sbjct: 61  QIIDK---KEKAIQAIIIEPTRELAIQTQEELFRLGRDERAHVQVVYGGADIGRQIRSLK 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LDH  RG + ++ ++ +V+DEAD MLDMGFI  I++I        Q
Sbjct: 118 HHVPSILVGTPGRLLDHLKRGTIDLDKVKTVVLDEADEMLDMGFIQDIESILKYAKNRNQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + ++ E F+ NP+ +++     TA+ I+  FV                 
Sbjct: 178 TLLFSATMPKPILRIGEKFMNNPEIVQIKAKELTADLIDQYFVRAKESEKFDIMCRL--- 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++F   K+ V  L   L+ +G++   IHG++ Q  RM +L  F+EG + ++
Sbjct: 235 IDVQGPDLAVVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPP 381
           IE+L +KK       +S L PP
Sbjct: 355 IEQLTKKK-------MSPLRPP 369


>gi|124249330|ref|NP_694705.2| probable ATP-dependent RNA helicase DDX27 [Mus musculus]
 gi|74140985|dbj|BAE22077.1| unnamed protein product [Mus musculus]
 gi|74210620|dbj|BAE23664.1| unnamed protein product [Mus musculus]
 gi|123240386|emb|CAM17306.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Mus musculus]
 gi|148674548|gb|EDL06495.1| mCG14602, isoform CRA_c [Mus musculus]
          Length = 760

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 155/465 (33%), Positives = 244/465 (52%), Gaps = 23/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 184 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 243

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++  +  ++T  L +GG+  ++Q   L 
Sbjct: 244 ERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALR 303

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 304 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 363

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 364 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 423

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 424 LMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 483

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K +  
Sbjct: 484 VATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 543

Query: 360 IEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K  +                  K++ L  D+ ++     +    Q + A+ +    Q+
Sbjct: 544 IVKAAKAPVKARILPQDVILKFRDKIEKLEKDVYAVLQLEAEEKEMQQSEAQID--TAQR 601

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
                +   +   ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 602 LLAKGKETADQEPERSWFQTKEERKKEKIAKALQEFD---LALRG 643


>gi|284920649|emb|CBG33712.1| putative ATP-dependent RNA helicase [Escherichia coli 042]
          Length = 454

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 234/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV+  ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKNLAEKLLHNPLEIEVSRRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|152992886|ref|YP_001358607.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
 gi|151424747|dbj|BAF72250.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
          Length = 457

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 169/457 (36%), Positives = 259/457 (56%), Gaps = 13/457 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+  ++ A+ D GY  PTPIQ + IP+V++  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTNLGLNESLLKAIKDQGYTSPTPIQKQAIPVVIEGKDVLAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +   ++  +  R L+L PTRELAAQVA++ + YGK    T  ++ GG+    Q   
Sbjct: 61  ERLSETHPKMGKKQIRVLVLTPTRELAAQVAESIKTYGKYMKYTSTVVYGGVGINPQLAT 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           + RG D++I TPGR+LD   +  +  + +E LV+DEADRMLDMGFI  I+ +  ++P  R
Sbjct: 121 IRRGVDIVIATPGRLLDIAGQQGIDFSALETLVLDEADRMLDMGFIHDIKKLMKMMPKER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT + E++K++   L+NP  +EV   ++TA+ I            ++       
Sbjct: 181 QTLLFSATFSLEIKKLASGLLKNPVLVEVARENTTADQISQVVHFVDKSRKRELLSQL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  +  ++F   K     L   LE+ G S  AIHGN  Q +R K L++FK   I++
Sbjct: 239 -IKTKDWRQVLVFTRTKHGANRLTKQLEEAGISAAAIHGNKSQGARTKALASFKANEIRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV N+++PN  E+Y+HRIGRTGRAG+ G+A +LV  ++ K + 
Sbjct: 298 LVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGQSGEAVSLVCVDEHKLLF 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNP-----PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            IEK I+ ++  ++ +  + +P     P++            N+    ++T    R+   
Sbjct: 358 DIEKFIKSEIKKVHIEAFTPDPNIKAEPIQNGRGGGQKRGGGNSRNRSRNTNTSNREHKE 417

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMP 450
           SS K      ++   +K+  +IQE   D L  R   P
Sbjct: 418 SSAKKANT--KNSAAAKIGNNIQEK-LDKLEKRDMNP 451


>gi|68248840|ref|YP_247952.1| cold-shock DEAD-box protein A-like protein [Haemophilus influenzae
           86-028NP]
 gi|68057039|gb|AAX87292.1| Cold-shock DEAD-box protein A homolog [Haemophilus influenzae
           86-028NP]
          Length = 613

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 139/405 (34%), Positives = 231/405 (57%), Gaps = 20/405 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 5   ITFNDLGLPEFILKAVSDLGFETPSPIQQACIPHLLNGNDVLGMAQTGSGKTAAFALPLL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E++ K  +   +  L GG  ++ Q + L
Sbjct: 65  AQIDPSE---KHPQMLVMAPTRELAIQVADACEQFVKYAHGTRIVTLYGGQRYDIQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  R  L ++ +  +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 122 KQGAQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+ +P+ +++       E       + +  +  +        
Sbjct: 182 TALFSATMPEPIRRITKRFMNDPQEVKIKV---NNENAPDIDQSCWYVHGVRKNEALLRF 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 239 LEVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 299 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 358

Query: 360 IEKLIEKKVDWLN-------------GDLSSLNPPLEKIDIAQHN 391
           IE L++K ++ +                ++ +   LE  D+ Q+ 
Sbjct: 359 IEHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYR 403


>gi|297847510|ref|XP_002891636.1| hypothetical protein ARALYDRAFT_474250 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337478|gb|EFH67895.1| hypothetical protein ARALYDRAFT_474250 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 392

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 131/374 (35%), Positives = 200/374 (53%), Gaps = 5/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+G++ KV+  V D GY KP+ IQ + +  +L+  DV   AQ+GTGKT+   + +  
Sbjct: 23  SFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQ 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I+     +V+    L+L P+RELA+Q     +  G + N+     IGG       KKLER
Sbjct: 83  IVNTSSRKVQA---LVLSPSRELASQTEKTIQVIGAHTNIQAHACIGGKSIGEDIKKLER 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G   +  TPGR+ D   RG L    +++LV+DE+D ML  G    I ++   +P   Q  
Sbjct: 140 GVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVC 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++E F+ +P RI V     T E I+  +V    +  K   L       
Sbjct: 200 LISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDL--YG 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN ++ V  L   +    F V ++HG+  Q+ R +I++ F+    ++++A
Sbjct: 258 RLIINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDEIMNQFRSFKSRVLIA 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+ ARG+D+  V HV N+D+PN  E YIHRIGR GR GR G A   V   D+K +  IE
Sbjct: 318 SDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKDIE 377

Query: 362 KLIEKKVDWLNGDL 375
           +    K+  +  DL
Sbjct: 378 RHYGTKIREMPADL 391


>gi|315637497|ref|ZP_07892707.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
 gi|315478215|gb|EFU68938.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
          Length = 435

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 168/432 (38%), Positives = 262/432 (60%), Gaps = 7/432 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL  +++ A+ + GY  PTPIQ K+IP++L + DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSNLGLCKEILRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L+      +    R LIL PTRELAAQVA + E YGK      A++ GG+    Q   
Sbjct: 61  QRLKDSNLKDKKTQVRALILTPTRELAAQVAQSVETYGKYLPFKSAVIFGGVGINPQKAL 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G D++I TPGR+LD  ++  L ++ IE LV+DEADRMLDMGFI  I+ I +++P  R
Sbjct: 121 LKKGVDIIIATPGRLLDLISQDSLDLSKIEFLVLDEADRMLDMGFINDIKKILAILPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT ++E++K+++  L++P  +EV+  +S +  +E           K+       
Sbjct: 181 QNLLFSATFSNEIKKLADGLLKSPVLVEVSKANSASFKVEQVVHHVDKDRKKEL---LLH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L ++++ +  ++F   K     L  +L K   +  AIHGN  Q +R K L +FK G +++
Sbjct: 238 LVNKNSWQQVLVFTRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV NF++PN AE+Y+HRIGRTGRAG +G A +LV  ++ +++ 
Sbjct: 298 LVATDIAARGIDIEQLPHVVNFELPNVAEDYVHRIGRTGRAGNNGIAISLVCVDEHEYLF 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IE+LI++K+  +  +   +NP ++   I   N + + N     +     + KN +S  S
Sbjct: 358 GIERLIKQKIKKVEINGFKVNPNIKAEPIG--NRSNRGNKANNSNQNRKVKPKNENSSSS 415

Query: 419 HIPLKESEKISK 430
             P + + K  +
Sbjct: 416 TKPRRFASKNRR 427


>gi|315037505|ref|YP_004031073.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus
           GRL 1112]
 gi|325955969|ref|YP_004286579.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           30SC]
 gi|312275638|gb|ADQ58278.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus
           GRL 1112]
 gi|325332534|gb|ADZ06442.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           30SC]
 gi|327182801|gb|AEA31248.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus
           GRL 1118]
          Length = 497

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 145/382 (37%), Positives = 226/382 (59%), Gaps = 14/382 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+  ++ A+  +G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-L 119
             ++K   + +  + +I+EPTRELA Q  +   + G++ +  V ++ GG     Q +   
Sbjct: 61  QTIDK---KEKAIQAIIIEPTRELAIQTQEELFRLGRDEHTHVQVVYGGADIGRQIRSLK 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LDH  RG + ++ ++ +V+DEAD MLDMGFI  I++I       +Q
Sbjct: 118 HHVPSILVGTPGRLLDHLKRGTINLDKVKAVVLDEADEMLDMGFIQDIESILKYAKNRKQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + ++ E F+ +PK +++     TA+ I+  FV                 
Sbjct: 178 TLLFSATMPKPILRIGEKFMNHPKIVQIKAKELTADLIDQYFVRAKESEKFDIMCRL--- 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++F   K+ V  L   L+ +G++   IHG++ Q  RM +L  F+EG + ++
Sbjct: 235 IDVQGPDLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPP 381
           IE+L +KK       +S L PP
Sbjct: 355 IEQLTQKK-------MSPLRPP 369


>gi|170754257|ref|YP_001782408.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum B1 str.
           Okra]
 gi|169119469|gb|ACA43305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum B1 str. Okra]
          Length = 524

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 140/383 (36%), Positives = 223/383 (58%), Gaps = 5/383 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L L+  V+ A+   G+  P+ IQ K+IP+VL+  DV   AQTGTGKT +F  P+++
Sbjct: 5   NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +  + L+L PTRELA Q+ D  ++  K     V  + GG   E Q K ++ 
Sbjct: 65  AL-CDNEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKS 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGRILDH NR  L +  I+ L++DEAD ML+MGFI  I+ I       +QT+
Sbjct: 124 GVDIVVGTPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K++ N+++           S                 K  A+ +  +  
Sbjct: 184 LFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICR--IID 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  ++ IIFC  K+ V  L  +++ +G++V  +HG++ Q  R+  L  FK+ T+  +VA
Sbjct: 242 SEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ ++ HV N+D+P  AE+Y+HRIGRTGRA + G A++LV   ++  I  IE
Sbjct: 302 TDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIE 361

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
           ++I+ K+     +L +L   LEK
Sbjct: 362 RIIKSKIT--KKELPTLEDILEK 382


>gi|119897299|ref|YP_932512.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
 gi|119669712|emb|CAL93625.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
          Length = 494

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 158/374 (42%), Positives = 233/374 (62%), Gaps = 8/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGL P++  AV DAGY +PTPIQ + IP+V+  +DV G AQTGTGKTA F LP+L
Sbjct: 1   MSFADLGLIPELQRAVADAGYTEPTPIQRQAIPIVIAGNDVMGGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L +       P        IL PTRELA QV ++ + Y K+  L    + GG+    Q
Sbjct: 61  HRLARHANTSTSPARHQTRALILAPTRELAMQVYESVKTYSKHLPLRATCIYGGVDMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L RG +++I TPGR+LDH  +  + +  +E+LV+DEADRMLDMGFIP I+ I +L+P
Sbjct: 121 IQELRRGIEIVIATPGRLLDHVQQKTINLTQVEMLVLDEADRMLDMGFIPDIKRILALLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +RQ+LLFSAT +DE++K+++  L+NP+ IEV   +  +ETI H      +   +     
Sbjct: 181 ASRQSLLFSATFSDEIKKLADQMLKNPQLIEVARRNMVSETITHRVHPVSSGMKRNLLAH 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                        ++F + K     L H LE+   S  +IHG+  Q+ R + L  FK G 
Sbjct: 241 LL---RHQPDTQALVFVDTKLVCGRLAHFLERHSISADSIHGDKSQQQRTETLEAFKAGK 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARG+DI ++ +V N+++P+ AE+Y+HRIGRTGRAG  G A +LV  E+  
Sbjct: 298 LRVLVATDVAARGIDIDELPYVINYELPHTAEDYVHRIGRTGRAGHQGNAVSLVCTEEKH 357

Query: 356 HIDAIEKLIEKKVD 369
            +  I+KLI+ ++ 
Sbjct: 358 LLADIQKLIKLEIP 371


>gi|88801632|ref|ZP_01117160.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
 gi|88782290|gb|EAR13467.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
          Length = 432

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 167/435 (38%), Positives = 248/435 (57%), Gaps = 10/435 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGLSP +V AV + GY KP+PIQ K IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFKDLGLSPALVKAVEEKGYTKPSPIQEKAIPHILEGKDILASAQTGTGKTAGFTLPVL 60

Query: 61  TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L + +     P R L+L PTRELAAQV DN  +Y K  ++   ++ GG+  + Q   L
Sbjct: 61  QYLVETKHPKYRPLRALVLTPTRELAAQVHDNVREYSKYVDIKSTVVFGGVNAKPQIATL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD  ++  L    +E+L++DEADRMLDMGF+  I  I S +P  RQ
Sbjct: 121 RSGVDILVATPGRLLDLHDQKALSFKRVEVLILDEADRMLDMGFVRDINKIISFMPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +++++K++   L++P  +E    +STA+ + H           +  +     
Sbjct: 181 NLMFSATFSNDIKKLASGILRDPVSVETAPQNSTAKKVTHKVYKVDKNKKTEFTIKL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      ++F   K     L   L K   S  AIHGN  Q +R K L NFK+G+I+++
Sbjct: 238 IKEGNWNQVLVFTRTKHGANKLTEKLIKADISAAAIHGNKSQGARTKALKNFKDGSIKIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + HV NF++PN  E+Y+HRIGRTGRAG  G+A +LV  E+ ++   
Sbjct: 298 VATDIAARGLDIPLLPHVVNFELPNVPEDYVHRIGRTGRAGAAGEAISLVCSEESEYQSE 357

Query: 360 IEKLIEKKVD---WLNGDLSSLNPPLEKIDIAQHNHARKNNP---IPQKSTGFDRRKKNY 413
           IEKL+ +K+        + +  +PP      ++ +  +KN      P+    F   K + 
Sbjct: 358 IEKLLNEKLKSTIVAGFEPTDTDPPKRAASQSKGSFGKKNKADGNKPKSKPHFKGNKPSE 417

Query: 414 SSQKSHIPLKESEKI 428
            S +      + ++ 
Sbjct: 418 PSGRGRTSAPKKKRY 432


>gi|21673432|ref|NP_661497.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
 gi|21646533|gb|AAM71839.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
          Length = 657

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 142/373 (38%), Positives = 222/373 (59%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F  L L+  ++ A+   GY  PTPIQ  TIPL+L+  DV G AQTGTGKTA+F LP+L
Sbjct: 27  VNFRSLELAEPLLRALEAVGYENPTPIQASTIPLLLEGRDVLGQAQTGTGKTAAFALPVL 86

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + ++        P+ L+L PTRELA QVA+ F  Y +       L I  G  +  Q + L
Sbjct: 87  SNIDLS---ATDPQALVLAPTRELAIQVAEAFHTYAEFMPGFHVLPIYGGQDYGVQIRNL 143

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGR++DH  +G L ++N++ LV+DEAD ML MGFI  ++ I    P +RQ
Sbjct: 144 KRGVHVVVGTPGRVMDHMRKGTLNLDNLKCLVLDEADEMLRMGFIDDVEWILDQTPESRQ 203

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   + +++  +L+ P  I + T ++T ETI   +      +          +
Sbjct: 204 VALFSATMPQPIVRIARKYLKAPAEITIQTKTTTVETIRQRYWMVGGHHKLDALTRILEV 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D +   IIF   K   V L   L+ +G++  A++G++ Q +R + +   K+GT+ ++
Sbjct: 264 EPFDGI---IIFVRTKTETVALAEKLQARGYAAAALNGDMVQSARERTIEQLKDGTLNIV 320

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   V+  +   + A
Sbjct: 321 IATDVAARGLDVERISHVINYDIPTDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLFA 380

Query: 360 IEKLIEKKVDWLN 372
           IE+   K+++ + 
Sbjct: 381 IERATRKRIELME 393


>gi|163755613|ref|ZP_02162732.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1]
 gi|161324526|gb|EDP95856.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1]
          Length = 438

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 164/408 (40%), Positives = 241/408 (59%), Gaps = 6/408 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGLS  ++ A+   GY  P+PIQ K IPLVL+R DV   AQTGTGKTA F LPM 
Sbjct: 1   MSFKSLGLSDALLRAISKKGYTTPSPIQAKAIPLVLERKDVLASAQTGTGKTAGFTLPML 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + ++   R R  R LIL PTRELAAQV  N ++Y    ++   ++ GG+    Q   L
Sbjct: 61  QLLSQQPPLRKRPIRALILTPTRELAAQVYANVKEYSTFLDIRSTVIFGGVNARPQIATL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD  ++  L +  +E+LV+DEADRMLDMGF+  I+ +  LVP  RQ
Sbjct: 121 RNGVDILVATPGRLLDLHSQKALSLAKVEMLVLDEADRMLDMGFLRDIKRVIELVPKRRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + +++K++++ L +P  +E    ++TAE +             +  +     
Sbjct: 181 NLLFSATFSKDIKKLAQSILHHPVSVEATPENTTAEKVNQKVYKVDKPRKTELLIKL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+      ++F   K     L   L  +  S  AIHGN  Q +R K L  FK+GTI+++
Sbjct: 238 ISEGNWSQVLVFTRTKHGANRLTKKLIAKHISAAAIHGNKTQNARTKALDGFKKGTIRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + HV NF++PN  E+Y+HRIGRTGRAG  G+A +LV+ E+ +++  
Sbjct: 298 VATDIAARGLDIPLLPHVINFELPNVPEDYVHRIGRTGRAGASGEAISLVSAEEYEYVRG 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           IEKL+++K+  + + G  +  N              +K+N  P+ ++G
Sbjct: 358 IEKLLDEKLHSEEIEGFEADPNYTPPPKQQRPQRSRKKSNSSPRGNSG 405


>gi|169347296|ref|ZP_02866234.1| hypothetical protein CLOSPI_00011 [Clostridium spiroforme DSM 1552]
 gi|169293913|gb|EDS76046.1| hypothetical protein CLOSPI_00011 [Clostridium spiroforme DSM 1552]
          Length = 531

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 134/371 (36%), Positives = 223/371 (60%), Gaps = 4/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLS +V+ A+ D G+ KP+ IQ K IP++L   D  G AQTGTGKT +F   +L+
Sbjct: 5   KFEQLGLSEEVLKAIKDMGFSKPSQIQEKAIPILLTGVDAIGQAQTGTGKTLAFGSVLLS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    R   P+ +IL PTRELA Q+ +   + GK+    +  + GG   E Q + +++
Sbjct: 65  KIKPIDDR--FPQAIILSPTRELAMQIHEEMNRIGKHNGSKIVCVFGGSDIEKQIRSIKK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR++D   R  L  +N++ +V+DEAD ML+MGF+  I+ I   V   RQT+
Sbjct: 123 GVDIVVGTPGRVMDLMRRKVLKFDNVKYVVLDEADEMLNMGFVEDIETILEKVDDARQTI 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K+++N++ +  +        T  T    F        +   L +     
Sbjct: 183 LFSATMPAGIKKIAQNYMHDDFKHVAVLSKQTTATSVKQFYYEVKPKDRFETLCRL--ID 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +K GIIFC  K++V  +   +++  ++V A+HG+++Q  RM  L  FK+GTI  +VA
Sbjct: 241 VANIKTGIIFCRTKRSVDEVTEQMQQSNYNVEAMHGDLNQNHRMNTLRKFKKGTINFLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ +V HV N+++P   E+Y+HRIGRTGRA + G A+++++ +++  +  IE
Sbjct: 301 TDVAARGIDVENVTHVINYELPQDIESYVHRIGRTGRADKEGLAYSIISPKEVSFLKQIE 360

Query: 362 KLIEKKVDWLN 372
           ++ +  +  +N
Sbjct: 361 RVTKSTITKVN 371


>gi|29427914|sp|Q921N6|DDX27_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
           Full=DEAD box protein 27
          Length = 760

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 154/465 (33%), Positives = 244/465 (52%), Gaps = 23/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 184 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 243

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++  +  ++T  L +GG+  ++Q   L 
Sbjct: 244 ERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALR 303

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEAD+MLD  F   ++ I  +    RQ
Sbjct: 304 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADKMLDEYFEEQMKEIIRMCSHHRQ 363

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 364 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 423

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 424 LMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 483

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K +  
Sbjct: 484 VATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 543

Query: 360 IEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K  +                  K++ L  D+ ++     +    Q + A+ +    Q+
Sbjct: 544 IVKAAKAPVKARILPQDVILKFRDKIEKLEKDVYAVLQLEAEEKEMQQSEAQID--TAQR 601

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
                +   +   ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 602 LLAKGKETADQEPERSWFQTKEERKKEKIAKALQEFD---LALRG 643


>gi|295104477|emb|CBL02021.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
           SL3/3]
          Length = 641

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 158/414 (38%), Positives = 233/414 (56%), Gaps = 8/414 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ AV +AGY  P+PIQ   IP VL   D+ G AQTGTGKTA+F LPML
Sbjct: 1   MTFKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPML 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                    R    R LIL PTRELA Q+ ++FE YGK   L   ++ GG+    Q + L
Sbjct: 61  DRLTANAPRRKGAVRALILTPTRELALQIGESFEAYGKYLKLRSTVIFGGVGQAPQVEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G D+LI  PGR+ D   +G + ++ +EI V+DEADRMLDMGF+  ++ + + +P  RQ
Sbjct: 121 KKGVDILIACPGRLNDLIGQGFIDLSALEIFVLDEADRMLDMGFVHDVKKVIAKLPAQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  E+++++   L +P  ++V+  SST + I+           K       + 
Sbjct: 181 NLMFSATMPAEIEQLAAGILHDPAFVKVDPVSSTVDRIQQSLYYVEKGNKKLLLPWL-IK 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  + N ++F   K     +   L KQG    AIHGN  Q +R+  L +FK G  +++
Sbjct: 240 NLQPPVVNALVFSRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALEDFKSGKTRVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI ++ HVFN+D+P   E Y+HRIGRT RAG  G A +  A E+ +++  
Sbjct: 300 VATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEQEYLAG 359

Query: 360 IEKLIEKKVDWLNG-DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           IEKL  +K+  ++G     +  P+  +        R   P P+     +  KK 
Sbjct: 360 IEKLNRRKIPVVSGHPWDGVPAPVRPV-----LPVRGKKPRPEAENLAEAPKKQ 408


>gi|255533359|ref|YP_003093731.1| DEAD/DEAH box helicase domain-containing protein [Pedobacter
           heparinus DSM 2366]
 gi|255346343|gb|ACU05669.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 437

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 163/430 (37%), Positives = 242/430 (56%), Gaps = 17/430 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY +PTPIQ + IP +LQ  D+ G AQTGTGKTA+F +PML
Sbjct: 1   MLFKELNLIEPILNALQTEGYTQPTPIQEQAIPSILQNRDLLGCAQTGTGKTAAFAIPML 60

Query: 61  T---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                        ++ + L+L PTRELA Q+ ++F+ YGKN  +   ++ GG+  +AQ  
Sbjct: 61  QLLSKPHTNTKIHKVIKALVLTPTRELAIQIEESFKAYGKNLPIRHLVIFGGVGQKAQTD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+L+ TPGR+LD  N+G + + +IEI V+DEADRMLDMGFI  ++ + + +P  
Sbjct: 121 ALHRGVDILVATPGRLLDLMNQGFINLRDIEIFVLDEADRMLDMGFIHDVKKVIAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL FSATM  E+Q +++  L NP ++EV   SSTAE I            K   +   
Sbjct: 181 RQTLFFSATMPKEIQGLADTILTNPVKVEVTPVSSTAEKIRQEIFYVEKGDKKGLLMHIL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                 T++  ++F   K     +   L K G    AIHGN  Q +R + L+NFK  T +
Sbjct: 241 ---QDKTIETALVFARTKHGADRIVKDLIKVGVKAEAIHGNKSQNARQRALTNFKAKTTR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HV N+++PN  E Y+HRIGRTGRAG  G A +    E+ + +
Sbjct: 298 ILVATDIAARGIDVDELSHVINYELPNIPETYVHRIGRTGRAGLSGTALSFCDAEEKEFL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           D IEKLI  K+           P  E    A    +  +     K+ G  +  +   S++
Sbjct: 358 DDIEKLIGLKL-----------PVTEDHPFAMSWQSLLSGAAAAKTKGKTKPSRGQRSER 406

Query: 418 SHIPLKESEK 427
           +  P K+  +
Sbjct: 407 TSRPEKKEHE 416


>gi|160942681|ref|ZP_02089924.1| hypothetical protein FAEPRAM212_00153 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446036|gb|EDP23039.1| hypothetical protein FAEPRAM212_00153 [Faecalibacterium prausnitzii
           M21/2]
          Length = 641

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 158/414 (38%), Positives = 233/414 (56%), Gaps = 8/414 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ AV +AGY  P+PIQ   IP VL   D+ G AQTGTGKTA+F LPML
Sbjct: 1   MTFKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPML 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                    R    R LIL PTRELA Q+ ++FE YGK   L   ++ GG+    Q + L
Sbjct: 61  DRLTANAPRRKGAVRALILTPTRELALQIGESFEAYGKYLKLRSTVIFGGVGQAPQVEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G D+LI  PGR+ D   +G + ++ +EI V+DEADRMLDMGF+  ++ + + +P  RQ
Sbjct: 121 KKGVDILIACPGRLNDLIGQGFIDLSALEIFVLDEADRMLDMGFVHDVKKVIAKLPAQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  E+++++   L +P  ++V+  SST + I+           K       + 
Sbjct: 181 NLMFSATMPAEIEQLAAGILHDPAFVKVDPVSSTVDRIQQSLYYVEKGNKKLLLPWL-IK 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  + N ++F   K     +   L KQG    AIHGN  Q +R+  L +FK G  +++
Sbjct: 240 NLQPPVVNALVFSRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALEDFKSGKTRVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI ++ HVFN+D+P   E Y+HRIGRT RAG  G A +  A E+ +++  
Sbjct: 300 VATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEQEYLAG 359

Query: 360 IEKLIEKKVDWLNG-DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           IEKL  +K+  ++G     +  P+  +        R   P P+     +  KK 
Sbjct: 360 IEKLNRRKIPVVSGHPWDGVPAPVRPV-----LPVRGKKPRPEAENLAEAPKKQ 408


>gi|90022842|ref|YP_528669.1| dystroglycan-type cadherin-like protein [Saccharophagus degradans
           2-40]
 gi|89952442|gb|ABD82457.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 516

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 163/407 (40%), Positives = 234/407 (57%), Gaps = 10/407 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+LGL P +  AVL+ GY  PTPIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 18  MKFAELGLCPAIQKAVLEQGYETPTPIQAQAIPPVLEGRDVMAAAQTGTGKTAGFTLPIL 77

Query: 61  TILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            IL +G       +    R L+L PTRELAAQV +N   YGK   +   ++ GG+    Q
Sbjct: 78  EILAEGIENGRKVKPNQARALVLTPTRELAAQVGENVALYGKYLPIKSTIVFGGVKINPQ 137

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL  G D+L+ TPGR++D +N+  +  + +E+LV+DEADRMLDMGFI  I+ I +++P
Sbjct: 138 MMKLRGGVDILVATPGRLMDLYNQRAVKFDQLEMLVLDEADRMLDMGFIHDIRKIMAILP 197

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ L+FSAT + ++++++++ + NP  I VN       T             K+   L
Sbjct: 198 KKRQNLMFSATFSQDIRELAKSIVNNPVEITVNP---PNSTATRVKQWICPVDKKEKPAL 254

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L   +  +  ++F   K     L   LE  G    AIHGN  Q +R K L+ FK GT
Sbjct: 255 LTHLIKTNKWQQVLVFSRTKHGANKLVKQLEGSGLRAAAIHGNKSQGARTKALAEFKNGT 314

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGLDI  +  V NFD+P  AE+Y+HRIGRTGRAG  G A +LV+ ++ +
Sbjct: 315 VKILVATDIAARGLDIDQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGNAVSLVSADEFQ 374

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
            +  IE+L +  +  + + G     N P  ++D       +   P P
Sbjct: 375 MLKEIERLTKTLLTREVIQGFEPDHNLPESRLDTRPIRPNKPKRPKP 421


>gi|324517616|gb|ADY46875.1| Eukaryotic initiation factor 4A-III [Ascaris suum]
          Length = 405

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 137/377 (36%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+GL  +++  +   G+ KP+ IQ + I  +++  DV   AQ+GTGKTA+F + +L 
Sbjct: 33  TFDDMGLREELIRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQAQSGTGKTATFSISVLQ 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L       +    LIL PTRELA+Q+       G   N+     IGG       +KL+ 
Sbjct: 93  GLNTTIRETQA---LILSPTRELASQIQKVILALGDYMNVQCHACIGGTNVGEDIRKLDY 149

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I +LV+DEAD ML+ GF   + +I   +P   Q +
Sbjct: 150 GQHVVSGTPGRVFDMIRRRNLRTRSIRMLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVV 209

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ NP RI V     T E I+  FVA   +  K   L       
Sbjct: 210 LLSATLPHEILEMTSKFMTNPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLCDL--YD 267

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L++  F+V A+HG+++Q+ R  I+  F+ GT +L+++
Sbjct: 268 TLTITQAVIFCNTRRKVDWLAEKLKEANFTVSAMHGDMEQKERDAIVKEFRSGTSRLLIS 327

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLDIP V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 328 TDVFARGLDIPQVSLVVNYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIE 387

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 388 QYYATQIDEMPMNVADL 404


>gi|325293690|ref|YP_004279554.1| dead-box ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
 gi|325061543|gb|ADY65234.1| dead-box ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
          Length = 500

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 167/431 (38%), Positives = 244/431 (56%), Gaps = 7/431 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++LGLS K+V +V   GY  PTPIQ K IPL+L+  D+ G+AQTGTGKTA+F LP++ 
Sbjct: 11  SFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 70

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +L K   R   R  RTLIL PTREL  Q+ +N   + K   L +  ++GG     Q  +L
Sbjct: 71  MLMKQADRPANRTTRTLILAPTRELVNQIGENLRSFVKKTPLRINQVVGGASINKQQLQL 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G DVL+ TPGR+LD   R  + ++ +  LV+DEAD+MLD+GFI  ++ I+ +VP  RQ
Sbjct: 131 EKGTDVLVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISKMVPAKRQ 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + +++ NFL +P ++EV  P   A+ +E        +  K    L +  
Sbjct: 191 TLLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTD--LLKKS 248

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++     I+F   K     L   LE  GF V +IHGN  Q  R + L  FK+G I+++
Sbjct: 249 LNENPDGRSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVL 308

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V HVFN+D+P   + Y+HRIGRT RAGR G A    A ++ + +  
Sbjct: 309 VATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHD 368

Query: 360 IEKLIEKKVDWLNGDLSS-LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           IEKL++  +   +G+  + L  P    +  +  +     P   +  G  R        + 
Sbjct: 369 IEKLMKIDIPVASGERPAGLASPTRPNNNNRGRNNNGGQPRGPREGG--RHNGEPRPSRH 426

Query: 419 HIPLKESEKIS 429
           H P      + 
Sbjct: 427 HAPRDADNDLE 437


>gi|28211624|ref|NP_782568.1| ATP-dependent RNA helicase [Clostridium tetani E88]
 gi|28204066|gb|AAO36505.1| ATP-dependent RNA helicase [Clostridium tetani E88]
          Length = 524

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 145/370 (39%), Positives = 219/370 (59%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGL+  ++ A+ D G+  P+ IQ + IP+VLQ  DV G AQTGTGKT +F  P+L
Sbjct: 4   LKFNNLGLNEDILKAIEDMGFETPSKIQAEVIPIVLQGFDVIGQAQTGTGKTLAFGAPVL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +V+     IL PTRELA QV        K     +  + GG   + Q K L+
Sbjct: 64  NSISNESKKVKSI---ILAPTRELAIQVYKELTTVAKYTKFKLLPVYGGDSIDRQIKSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D++I TPGR+ D  NR  L +++IE LV+DEAD ML+MGF+  I+NI       R+T
Sbjct: 121 KGIDIVIGTPGRVQDLINRKALNLSHIEFLVLDEADEMLNMGFVDDIENILKSCNEDRRT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++K+++ +++   +      +S   +    F     Q +K  +L +  + 
Sbjct: 181 LLFSATMPSEIKKIAKKYMKKDAKHVAIAQNSMTVSSVEQFYYEVKQKNKFESLCK--VL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S D     IIFC  KK V  L  S++++GFS   +HG++ Q  R+  L+ FKE TI  +V
Sbjct: 239 SVDEPTRAIIFCKTKKGVDELVSSMKEKGFSAEGMHGDMTQSHRLNTLNRFKERTIPFLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D  HV N+D+P   E+Y+HRIGRTGRA + G A+T V  ++   +  I
Sbjct: 299 ATDVAARGIDVKDTSHVINYDLPQDTESYVHRIGRTGRANKKGTAYTFVTPKEFSSLKRI 358

Query: 361 EKLIEKKVDW 370
           +K+ + K++ 
Sbjct: 359 QKISKSKINK 368


>gi|30249765|ref|NP_841835.1| putative ATP-dependent RNA helicase protein [Nitrosomonas europaea
           ATCC 19718]
 gi|30180802|emb|CAD85718.1| putative ATP-dependent RNA helicase protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 457

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 171/434 (39%), Positives = 249/434 (57%), Gaps = 13/434 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F +L L P +V AVL AGY  PTPIQ + IP ++  HDV   AQTGTGKTA+F+LP +
Sbjct: 1   MSFENLNLHPAIVKAVLAAGYTAPTPIQQQAIPDLIAGHDVMASAQTGTGKTAAFMLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKK 118
             +    + R R PR L+L PTRELA QV+D   KYGK       + I GG+P+  QNK 
Sbjct: 61  HRLATPAQIRGRGPRILVLTPTRELALQVSDAASKYGKFLPRINVVSILGGMPYPLQNKL 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  DVL+ TPGR++DH  RG++  + +E+LV+DEADRMLDMGFI  ++ I    P TR
Sbjct: 121 LSQTVDVLVATPGRLIDHIERGRIDFSRLEMLVLDEADRMLDMGFIQDVERIALSTPATR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+   ++K++   L+ PKRI+V    +  + IE           K    L   
Sbjct: 181 QTLLFSATLDVAIEKIATRLLKAPKRIQVAAQHTKLDHIEQRMHYVDDLTHKNR--LLDH 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L    T+K  I+F   K++  +L  +L  QG    A+HG++ QR R + L+  ++G +++
Sbjct: 239 LLRDTTIKQAIVFTATKRDADSLADNLSSQGHKAAAMHGDMTQRERTRTLTGLRQGRLKI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI D+ HV NFD+P  AE+Y+HRIGRTGRAG  G A +  + +D+ H+ 
Sbjct: 299 LVATDVAARGIDIADITHVINFDLPKFAEDYVHRIGRTGRAGASGIAVSFASGKDVAHLK 358

Query: 359 AIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            IE+    + ++  + G      P   + D        K    P  S    + ++++S  
Sbjct: 359 RIERFTGNRFEFHVIPGIEPRTKPRFGRSD-------DKPGRRPSSSAAAHKTRRSWSDN 411

Query: 417 KSHIPLKESEKISK 430
            +        +  K
Sbjct: 412 PNTRTASPGHRGDK 425


>gi|294056537|ref|YP_003550195.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615870|gb|ADE56025.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 524

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 146/368 (39%), Positives = 227/368 (61%), Gaps = 7/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL P+++ ++   G+ +P+PIQ +TIP+ L   D+ G++QTG+GKTA+F LP L 
Sbjct: 5   TFADLGLRPELLESIQRLGFEQPSPIQARTIPVALDGSDIVGLSQTGSGKTAAFALPALH 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            L+      ++   L+L PTRELA QV +   +         AL + G  P + Q + L+
Sbjct: 65  GLDLSNKATQV---LVLCPTRELAVQVCEEIHRLSTAMPKLQALPVYGGTPIDRQIRALK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR++DH  R  L  ++I + ++DEADRMLDMGF   ++ I   +P  RQT
Sbjct: 122 KGVHVVVGTPGRVMDHMKRKTLKTDSIRLCILDEADRMLDMGFREDMEIILDAIPQERQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   +Q + + F  + K+IE+   + T E+IE  +     +   +       ++
Sbjct: 182 LFFSATMNRGVQGLIKAFSHDAKQIEIEQKTLTVESIEQVYYEVRNRSKVEVMCRLLDME 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  GI+FCN K+ V ++C +L  +G++   IHG+I Q  R K++  F++  I+++V
Sbjct: 242 PTQ---RGIVFCNTKQMVEDVCEALNARGYTADRIHGDISQGIREKVIRRFRDNAIEILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+  VFN+D+P   E+Y+HRIGRTGRAGR GK+ T V   DI+ ++AI
Sbjct: 299 ATDVAARGLDIDDIELVFNYDLPYDPEDYVHRIGRTGRAGRSGKSITFVYGRDIRRLEAI 358

Query: 361 EKLIEKKV 368
           E+ I + +
Sbjct: 359 ERYIRQSI 366


>gi|30249980|ref|NP_842050.1| rhlE; ATP-dependent RNA helicase RhlE [Nitrosomonas europaea ATCC
           19718]
 gi|30139087|emb|CAD85951.1| rhlE; ATP-dependent RNA helicase RhlE [Nitrosomonas europaea ATCC
           19718]
          Length = 498

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 169/451 (37%), Positives = 254/451 (56%), Gaps = 17/451 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LGLS +++ AV D GYV PTPIQ + IP +L   DV   AQTGTGKTA F LP+L
Sbjct: 5   VTFAQLGLSSEILHAVNDEGYVNPTPIQAQVIPSILAGKDVMASAQTGTGKTAGFTLPLL 64

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L+        P        I+ PTRELA Q+ ++  KYGK   L  A++ GGI  E Q
Sbjct: 65  YRLQAYANTSVSPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRTAVVFGGINIEPQ 124

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G ++L+ TPGR+LD   +  +  +  EILV+DEADRMLDMGF+P I+ + +L+ 
Sbjct: 125 IAALQAGVEILVATPGRLLDLVEQKAVNFSKTEILVLDEADRMLDMGFLPDIKRVMALLS 184

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ+L+FSAT + E++K++++ L+ P RIE    ++  E+I H               L
Sbjct: 185 PQRQSLMFSATFSGEIRKLADSLLKQPVRIEAAVQNTVNESISHVIHWVKPDSK---FAL 241

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L  Q  +K  +IF   K    +L   L +   S  AIHG+ +Q+ R + L+ FK G 
Sbjct: 242 LLHLIRQQNLKQALIFVKTKHGASHLAQMLSRHEISAVAIHGDRNQQQRTQALAEFKHGD 301

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARG+DI  + HV N+++P   E+Y+HRIGRTGRAG  GKA +LV++ + +
Sbjct: 302 VQILVATDVAARGIDIEKLSHVINYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHEKE 361

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +  IEKL+  K++      +      +    A+    RKN      S   ++  +N S 
Sbjct: 362 LLANIEKLLNAKLE------TEQIAGFDAEQFARSLPDRKNRMSAGNSRYGNKPMENGSE 415

Query: 416 Q---KSHIPLKESEKISKLQQDIQENDADSL 443
           +   + H  L  S+K S  ++   +  +D +
Sbjct: 416 KSRSEKHRKLPSSQKYSGSRRGGTQKYSDPI 446


>gi|237730773|ref|ZP_04561254.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2]
 gi|226906312|gb|EEH92230.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2]
          Length = 448

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 161/391 (41%), Positives = 234/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P+++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPEILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITNQPHGKSRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVLI TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLIATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPTK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKSLAEKLLHNPLEIEVARRNTASEQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 QMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKID 386
             IEKL++K++  +   G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIATPGYEPDPSIKAEPIQ 388


>gi|169346889|ref|ZP_02865837.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens C str.
           JGS1495]
 gi|169296948|gb|EDS79072.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens C str.
           JGS1495]
          Length = 478

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 132/420 (31%), Positives = 229/420 (54%), Gaps = 6/420 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ A+ + GY  P+ +Q  +IP +L+  D+   +QTG+GKTASF +P+ 
Sbjct: 1   MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVC 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +V+    L+L PTRELA QV D     G+   +    + G  PF  Q ++L+
Sbjct: 61  EKINIEEKKVQC---LVLTPTRELAIQVKDELSNIGRIKKVRCVAIFGKQPFNEQIRELK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+ DH  RG L ++ +  +VIDEAD+ML MGFI  I++I   +   + T
Sbjct: 118 QRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT + E++++ E +++NP  +EV +     + IE    +      K          
Sbjct: 178 ALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEE---SAIEIEEKNKGKALWKCL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ I+FCN +  V ++   L+ +G +   +HG+++Q+ R++++ NF++   +++V
Sbjct: 235 YAYHPESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ +  +  V N++VP   E+Y+HRIGRTGRAGR GKA T V   + K+++ +
Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+ I  ++  ++           KI         K +  P+K    D  K + +  K   
Sbjct: 355 EEYIGYEIKKVSLPSDEEVKAGRKIFKESQKVQLKESKKPKKEVHSDIVKIHVNGGKKKK 414


>gi|193212728|ref|YP_001998681.1| DEAD/DEAH box helicase domain-containing protein [Chlorobaculum
           parvum NCIB 8327]
 gi|193086205|gb|ACF11481.1| DEAD/DEAH box helicase domain protein [Chlorobaculum parvum NCIB
           8327]
          Length = 427

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 157/424 (37%), Positives = 238/424 (56%), Gaps = 18/424 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL   ++ A+ + GY  PTPIQ + IPL+L+ HD+ G AQTGTGKTA+F LP+L
Sbjct: 1   MQFSALGLIDPLLKALDEEGYSSPTPIQAEAIPLLLEGHDLLGCAQTGTGKTAAFALPIL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                ++   R R  R L+L PTRELA Q+ ++FE YG++  L   ++ GG+    Q + 
Sbjct: 61  QLLHQDQEHGRKRKIRCLVLTPTRELALQIGESFEAYGRHTGLKSTVIFGGVNQNPQTRT 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+L+ TPGR+LD   +  L + +IE  V+DEADRMLDMGFI  ++ + + +P  +
Sbjct: 121 LAGGVDILVATPGRLLDLMGQEHLHLRDIEYFVLDEADRMLDMGFIHDVKKVLAALPKKK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM   +  ++ + L  PK++ V   SSTAE I    +    +         + 
Sbjct: 181 QSLFFSATMPPAIVNLAASILHQPKKVTVTPVSSTAEIINQHILFVDRENKNSL---LEH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L     + + + F   K     +   L ++     AIHGN  Q +R + L NFK G  ++
Sbjct: 238 LLQNRDISSVLAFTRTKHGADKVAKFLTRKNIKAEAIHGNKSQNARQRALGNFKSGETRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+ +V N D+PN AE Y+HRIGRTGRAG  G A++    E+ +++ 
Sbjct: 298 LVATDIAARGIDVDDLEYVINIDLPNVAETYVHRIGRTGRAGNRGTAYSFCNAEEKEYLR 357

Query: 359 AIEKLIEKKV--------DWLNGDLSSLNPPLEK-----IDIAQHNHARKNNPIPQKSTG 405
            IEKLI+K +          +N ++ +  P + K         +    +       KS+G
Sbjct: 358 DIEKLIDKSITVIDNHPYPMMNFEVEAPKPIVSKKGNGGQQKPKEKEKKAKQDSATKSSG 417

Query: 406 FDRR 409
             RR
Sbjct: 418 RKRR 421


>gi|47221754|emb|CAG08808.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1046

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 148/449 (32%), Positives = 239/449 (53%), Gaps = 15/449 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ A+    Y KPTPIQ + IP V+   D+ GIA+TG+GKT +F+LPM  
Sbjct: 344 TWVQCGVSMKILSALKKHTYEKPTPIQAQAIPAVMSGRDLIGIAKTGSGKTIAFLLPMFR 403

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 404 HIMDQRPLEESEGPIAVIMTPTRELALQITKECKKFSKPLGLRVVCVYGGTGISEQIAEL 463

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 464 KRGAEIIVCTPGRMIDMLGANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDSVRP 523

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S     +E        +   K   L 
Sbjct: 524 DRQTVMFSATFPRAMEALARRILNKPIEVQVGGRSVVCSDVEQHV--LVIEEDNKFLKLL 581

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + IIF +++++   L   L K  +   ++HG IDQ  R  I+++FK G  
Sbjct: 582 ELLGHYQERGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKSGAC 641

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +LMVA+ +AARGLD+  +  V N++ PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 642 RLMVATSVAARGLDVKQLILVVNYNCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARY 701

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     L+G  SS+ P LE++ ++  +  +    I + S+GF  +   +  +
Sbjct: 702 AGDIIKALE-----LSG--SSVPPELEQLWVSFKDQQKAEGKIIKSSSGFSGKGFKF-DE 753

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGF 445
             H    E +K+ K    +Q++D +    
Sbjct: 754 TEHALANERKKLQKAALGLQDSDDEDGAL 782


>gi|330812324|ref|YP_004356786.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380432|gb|AEA71782.1| putative ATP-dependent RNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 622

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 166/408 (40%), Positives = 245/408 (60%), Gaps = 17/408 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGLS  +V A+  AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP+ 
Sbjct: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 60  ------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                     +  R   R PR L+L PTRELAAQV ++F+ Y ++     A + GG+   
Sbjct: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + + RG DVL+  PGR+LD   +G + ++++EILV+DEADRMLDMGF+  ++ + + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A + +   
Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRAL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L +    +  ++F   K     L   L+K G    AIHGN  Q +R K L++FK 
Sbjct: 240 --LAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 GEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPP----LEKIDIAQHNHAR 394
            K + +IE++ ++K+   D +  D S++        E+ D+    +AR
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDVRNPRNAR 405


>gi|148264031|ref|YP_001230737.1| DEAD/DEAH box helicase domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146397531|gb|ABQ26164.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
           Rf4]
          Length = 438

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 157/450 (34%), Positives = 245/450 (54%), Gaps = 20/450 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL  +++ A+   GY  PTPIQ + IP++ +  D+   AQTGTGKTA+F LP++
Sbjct: 1   MSFESLGLRAELLSAIAAQGYTTPTPIQTEAIPVIFEGCDLLAGAQTGTGKTAAFALPIV 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                     + R PR L+L PTRELAAQV++    Y +  +L   ++ GG+  +AQ ++
Sbjct: 61  QRLGENIPPDKRRRPRALVLVPTRELAAQVSEQMNNYARRLSLRSTMIYGGVNIQAQIER 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+++ TPGR+LDH  RG + ++ I+ LV+DEADRMLD+GFI  I  +   +P  R
Sbjct: 121 LHRGVDIVVATPGRLLDHAERGTINLSRIKFLVLDEADRMLDLGFIDDIHKVAEYLPAKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT +  ++++++  L  P+RIEV   +  A+ +            +    +   
Sbjct: 181 QTMLFSATYSQSIKQLADELLDQPRRIEVARRNIAADAVTQAVYQVEKSRKR---EMLSF 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S+      ++F   +     L   L   G    AIH N  Q  R + L+ FK G  ++
Sbjct: 238 LISKGNWNQVLVFARTRYGADKLTEELLYDGIKAAAIHSNKSQSIRTRTLAEFKRGEFRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV N+D+P   E+Y+HRIGRTGRAG +G A +LV+ E+   + 
Sbjct: 298 LVATDVAARGLDIERLPHVVNYDLPQVPEDYVHRIGRTGRAGENGVALSLVSHEEQSLLQ 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKI-DIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           AIEKL++  +            PL+ + +  Q+   R +     K      + +    + 
Sbjct: 358 AIEKLLKYAI------------PLQTLAEFPQYAVRRVDKSKEIKPGNGPSKTRKRVEKS 405

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRG 447
           +  P K +    + ++ + E  A   G RG
Sbjct: 406 AKAPAKTT--TPQRKKVVAERPAPKTGRRG 433


>gi|290474026|ref|YP_003466900.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Xenorhabdus bovienii SS-2004]
 gi|289173333|emb|CBJ80110.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Xenorhabdus bovienii SS-2004]
          Length = 459

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 168/440 (38%), Positives = 257/440 (58%), Gaps = 13/440 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LGL   ++ AV + GYV+PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MNFESLGLKADILRAVEEQGYVEPTPIQQQAIPVVLSGKDLLASAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L +  A+    R  R LIL PTRELAAQV +N   Y K   L   ++ GG+    Q  
Sbjct: 61  QLLSESPAQAKGRRPVRALILTPTRELAAQVGENVCNYSKYLRLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++++EIL++DEADRMLDMGFI  I+ + S +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVDLSHVEILILDEADRMLDMGFIHDIRRVLSKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++   L++P  IEV   +S +E I     A +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKSLANKLLRDPVSIEVARRNSASEQI---DQAVHFVDKKRKGELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +      +  ++F   K     L   L + G +  AIHGN  Q +R + L++FK G I+
Sbjct: 238 YMIGNQNWQQVLVFTRTKHGANRLAEQLSQDGVTAAAIHGNKSQGARTRALADFKSGRIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI  + HV NF++PN AE+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 ALVATDIAARGLDIDQLPHVVNFELPNVAEDYVHRIGRTGRAEATGQAISLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-------KNNPIPQKSTGFDRRK 410
             IE+L+++++  +       +P ++   I   +++R       + +P  Q S+  +R  
Sbjct: 358 HDIERLLKREIPRIAISGYDPDPSIKAEPILNGSNSRGSQRGNGRQSPSNQGSSKPNRSN 417

Query: 411 KNYSSQKSHIPLKESEKISK 430
           ++ S+Q S     +  +   
Sbjct: 418 QSRSNQGSTKQHSDRPRSKG 437


>gi|119470499|ref|ZP_01613202.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7]
 gi|119446200|gb|EAW27477.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7]
          Length = 408

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 136/391 (34%), Positives = 207/391 (52%), Gaps = 9/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F++  L  K++ A+   GY KPT IQ + IP  LQ  D+   A TGTGKTA+F++P +
Sbjct: 1   MQFSEFDLDTKLLDAIDKMGYEKPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R      R LI+ PTRELA Q+ +  E   K  +L + ++ GGI +    +  
Sbjct: 61  QYLLDFPRREPGFARVLIMTPTRELAYQIHEQCELLAKRTHLKIGVVTGGINYGTHKEIF 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+  DVLI TPGR++++         ++E+L+IDEADRMLDMGF   +  I       RQ
Sbjct: 121 EKNNDVLIATPGRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEAKNRRQ 180

Query: 180 TLLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             LFSAT   D +++ +E  L +P  +E  +       I          + K    L   
Sbjct: 181 CFLFSATLEGDSVERFAETTLNDPALLEAESSRKEKAKIHQWVHLADDYHHKLE--LLVN 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +   +   I+F   ++ +  L   L   G     + G + Q  RMK + NF  G  ++
Sbjct: 239 TLNGPDVSKAIVFVKTRERLETLIGELTNNGVKAAWLRGEMPQDKRMKAMENFHSGRTKI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+ D+ HV NFD+P  A+ Y+HRIGRTGRAG+ G A +LV   DI  + 
Sbjct: 299 LIATDVAARGIDVSDISHVINFDMPRTADVYVHRIGRTGRAGKKGIAISLVEAHDIGILY 358

Query: 359 AIEKLIEKK-----VDWLNGDLSSLNPPLEK 384
            +E+ IE+K     +  +        PP++K
Sbjct: 359 KVERYIEQKLKRRVIKGIEPQHKEAKPPVKK 389


>gi|242007840|ref|XP_002424727.1| eukaryotic initiation factor 4A-II, putative [Pediculus humanus
           corporis]
 gi|212508220|gb|EEB11989.1| eukaryotic initiation factor 4A-II, putative [Pediculus humanus
           corporis]
          Length = 449

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 208/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+GL  +++  +   G+ KP+ IQ + I   ++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 77  NFDDMGLKEELLRGIYAYGFEKPSAIQQRAIMPCIKGHDVTAQAQSGTGKTATFSISILQ 136

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G   N      IGG       +KLE 
Sbjct: 137 QIDTSINE---CQALILAPTRELAQQIQKVVIALGDFMNAMCHACIGGTNVREDMRKLEH 193

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L  + I+I V+DEAD ML  GF   I ++   +    Q +
Sbjct: 194 GVHVVVGTPGRVYDMINRRCLRTDRIKIFVLDEADEMLSRGFKDQIHDVFQTLDVDVQVI 253

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS+ F++NP  I V     T E I+  +++   +  K   L       
Sbjct: 254 LLSATMPHDVLEVSKKFMRNPINILVQKDELTLEGIKQFYISVEREEWKFETLCDL--YE 311

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + K+ F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 312 TLTITQAVIFCNTRRKVDMLTDFMHKKDFTVSAMHGDMEQREREFIMRQFRSGSSRVLIT 371

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V ++D + ++ IE
Sbjct: 372 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTEQDKRTLNDIE 431

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     +  +  +++ L
Sbjct: 432 QFFNTHIIEMPMNVADL 448


>gi|167756706|ref|ZP_02428833.1| hypothetical protein CLORAM_02244 [Clostridium ramosum DSM 1402]
 gi|237732712|ref|ZP_04563193.1| helicase [Mollicutes bacterium D7]
 gi|167702881|gb|EDS17460.1| hypothetical protein CLORAM_02244 [Clostridium ramosum DSM 1402]
 gi|229384207|gb|EEO34298.1| helicase [Coprobacillus sp. D7]
          Length = 535

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 136/388 (35%), Positives = 231/388 (59%), Gaps = 10/388 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS +V+ A+ D G+ KP+ IQ + IP++L   DV G AQTGTGKT +F   +L+
Sbjct: 5   KFNELGLSNEVLKAIEDMGFSKPSKIQEEAIPVLLTGVDVIGQAQTGTGKTLAFGSVLLS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +   + ++  P+ +IL PTRELA Q+ +  E+ GK     +  + GG   E Q + +++
Sbjct: 65  KITPSQRKL--PQAIILSPTRELAMQIHEEMERIGKYNGSRITCVYGGSDIERQIRTIKK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR++D   R  L +N+++ +V+DEAD ML+MGF+  I+ I   V   RQT+
Sbjct: 123 GIDIIVGTPGRVMDLMRRNVLKLNDVKFVVLDEADEMLNMGFVEDIETILEKVDDDRQTI 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K+++N++ +           T  T    F     Q  +  A+ +     
Sbjct: 183 LFSATMPAGIKKIAQNYMHDNFEHVAVLSKQTTATSVKQFYYEVKQKDRFEAMCRL--ID 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              ++ GIIFC  K++V  +   +++  ++V A+HG++ Q  RM  L  FK+GTI  ++A
Sbjct: 241 VANVQTGIIFCRTKRSVDEVTEQMQQANYNVEAMHGDLSQNHRMNTLRKFKKGTINFLIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ +V HV N+++P   E+Y+HRIGRTGRA + G+A++++   +   +  IE
Sbjct: 301 TDVAARGIDVENVTHVINYELPQDIESYVHRIGRTGRADKEGQAYSIITPREKGFLRQIE 360

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
           ++ +  +        +  P L++I  A+
Sbjct: 361 RVTKSSIT------KATIPTLQEISEAK 382


>gi|118602178|ref|YP_903393.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567117|gb|ABL01922.1| DEAD/DEAH box helicase domain protein [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 434

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 146/372 (39%), Positives = 229/372 (61%), Gaps = 4/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           MDF+ LGLS  ++ A+   GY +P+ IQ + IP +L+  DV   AQTGTGKTA F+LP+ 
Sbjct: 1   MDFSKLGLSDSILKAIEQQGYREPSLIQAQAIPAILEGKDVMAAAQTGTGKTAGFILPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +    +    R LIL PTRELAAQV+D+   YGK  +   +++ GG+    Q +KL
Sbjct: 61  EILSKCSPIKFNQVRMLILTPTRELAAQVSDSVTIYGKYLSFKSSVVFGGVKINPQMRKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD +++  +  + +EI+V DEADRMLDMGFI  I+ I  ++P  +Q
Sbjct: 121 RDGVDILVATPGRLLDLYSKNAVKFDTLEIIVFDEADRMLDMGFIHDIKRILKILPQKKQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT +++++ ++++ + NP  I V   +ST +T++           +   +     
Sbjct: 181 TLMFSATFSNDIRILAKSLVNNPVEISVTPRNSTVKTVKQWIHPVDKFKKQALLIYL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             + +    ++F   K     +   LEK+  S   IHGN  Q +R + L++FK   + ++
Sbjct: 238 IQEHSWYQVLVFSRTKHGANRIATQLEKKKISATVIHGNKSQGARTRALADFKNAKVNVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV NFD+P   E+Y+HRIGRTGRAG  G+A +LV+ ++ K +  
Sbjct: 298 VATDIAARGIDIDQLPHVVNFDLPRVPEDYVHRIGRTGRAGSKGEAISLVSVDEAKQLFD 357

Query: 360 IEKLIEKKVDWL 371
           IE+LI+ K+D +
Sbjct: 358 IERLIQNKLDRI 369


>gi|218549636|ref|YP_002383427.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ATCC 35469]
 gi|218357177|emb|CAQ89812.1| RNA helicase [Escherichia fergusonii ATCC 35469]
          Length = 454

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 160/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKNLAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|258648442|ref|ZP_05735911.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           tannerae ATCC 51259]
 gi|260851194|gb|EEX71063.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           tannerae ATCC 51259]
          Length = 484

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 152/430 (35%), Positives = 248/430 (57%), Gaps = 9/430 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL LS  V+ A+ D  + K TP+Q + IP +L+  DV GIAQTGTGKTA+++LP+LT+
Sbjct: 9   FEDLALSDDVLDALYDMRFEKCTPVQARCIPPILEGRDVIGIAQTGTGKTAAYLLPLLTL 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNKKL 119
           L++          L++ PTRELA Q+    + +G   ++    + GG     +E + K L
Sbjct: 69  LKQESHPTDAVNCLVMAPTRELAQQIDQALQGFGYYVDVNGVAVYGGNDGVRYEQERKSL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGAD++I TPGR+L H + G   ++    LV+DEADRMLDMGF   I  I   +P  RQ
Sbjct: 129 KRGADIVIATPGRLLTHLDLGTFDLSRTTHLVLDEADRMLDMGFSDDILKIVKHLPEQRQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  ++++++   + NP+        + ++  E+   + +         + + L
Sbjct: 189 TILFSATMPAKIRELAHKIMHNPEE----VSIAISKPAENIRQSLFICKENDKTAIIKHL 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  IIFC  K+ V  L  +L+++G++V A+H +++Q+ R +++  FK G I ++
Sbjct: 245 FADQKPERVIIFCGSKQKVKELNITLKRKGYNVEAMHSDLEQKQRDEVMLGFKAGRIDIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARG+DI D+  V N+DVP  AE+Y+HRIGRT RAGR+G+A TLV ++D   +  
Sbjct: 305 VATDIVARGIDIDDITLVINYDVPRDAEDYVHRIGRTARAGRNGRAVTLVGEKDRYALRN 364

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE+L++K++  + L    +    P       + N  R++  I Q+     +R+       
Sbjct: 365 IEQLLDKELPREVLPEGFTPPEKPTATSGERRGNAHRRSASIKQREQHDHKRRDKRKPAG 424

Query: 418 SHIPLKESEK 427
           +     E +K
Sbjct: 425 AKHNDGEGQK 434


>gi|325498031|gb|EGC95890.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ECD227]
          Length = 453

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKNLAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|323976817|gb|EGB71905.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
          Length = 454

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKNLAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|221211314|ref|ZP_03584293.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD1]
 gi|221168675|gb|EEE01143.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD1]
          Length = 480

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 161/400 (40%), Positives = 234/400 (58%), Gaps = 9/400 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTFYTEHRSAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAET+            ++     
Sbjct: 181 RRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHAR 394
           +  IE+LI++++  + + G     N   E I   +    R
Sbjct: 358 LRDIERLIKREIPREVIAGFEPDPNAKPEPIQQRRGQQPR 397


>gi|218699169|ref|YP_002406798.1| ATP-dependent RNA helicase RhlE [Escherichia coli IAI39]
 gi|218369155|emb|CAR16910.1| RNA helicase [Escherichia coli IAI39]
          Length = 453

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKNLAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|321479177|gb|EFX90133.1| hypothetical protein DAPPUDRAFT_300157 [Daphnia pulex]
          Length = 404

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  V++  DV   AQ+GTGKTA+F + +L 
Sbjct: 32  TFDSMGLREDLLRGIYAYGFEKPSAIQQRAIAPVIKGRDVIAQAQSGTGKTATFSISILQ 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            LE      ++   L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 92  SLEIQTRETQI---LVLSPTRELAVQIQKVILALGDYMNVQCHACIGGTNVGEDVRKLDY 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L   +I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 149 GQHIVSGTPGRVFDMIRRRTLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 209 LLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  ++++ 
Sbjct: 267 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDTIMKEFRNGQSRVLIT 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 327 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRDIE 386

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +VD +  +++ L
Sbjct: 387 QYYATQVDEMPMNVADL 403


>gi|255324480|ref|ZP_05365597.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
           SK141]
 gi|255298386|gb|EET77686.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
           SK141]
          Length = 619

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 149/383 (38%), Positives = 234/383 (61%), Gaps = 9/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL  K++ AV   G+ KP+PIQ +TIP++++  DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 57  FAHLGLPEKILEAVAKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQ 116

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    + R P+ L+L PTRELA QVAD+F+ + ++      L I  G  +  Q   L R
Sbjct: 117 IDT---KARHPQALVLAPTRELALQVADSFQSFAESLKGVEVLPIYGGQAYGIQLSGLRR 173

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  +G L ++ ++ LV+DEAD ML+MGF   ++ I    P  +Q  
Sbjct: 174 GAQVIVGTPGRVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILEDTPDRKQVA 233

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++S+ +L NP  + V +   T + I   F+    +           + +
Sbjct: 234 LFSATMPNAIRRLSKQYLDNPAEVTVKSERRTNDNITQRFLLIPHRAKMDAFTRILEVIN 293

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D +   I+FC  K     +  +L  +GFS  AI+G+I Q  R + +   K+G + ++VA
Sbjct: 294 YDAI---IVFCRTKHETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 350

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV NFD+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 351 TDVAARGLDVERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 410

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
           ++   +++ +  DL S++   EK
Sbjct: 411 RVTNARLEEM--DLPSVDEVNEK 431


>gi|311740664|ref|ZP_07714491.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304184|gb|EFQ80260.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 619

 Score =  178 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 149/383 (38%), Positives = 234/383 (61%), Gaps = 9/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL  K++ AV   G+ KP+PIQ +TIP++++  DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 57  FAHLGLPEKILEAVAKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQ 116

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    + R P+ L+L PTRELA QVAD+F+ + ++      L I  G  +  Q   L R
Sbjct: 117 IDT---KARHPQALVLAPTRELALQVADSFQSFAESLKGVEVLPIYGGQAYGIQLSGLRR 173

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  +G L ++ ++ LV+DEAD ML+MGF   ++ I    P  +Q  
Sbjct: 174 GAQVIVGTPGRVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILEDTPDRKQVA 233

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++S+ +L NP  + V +   T + I   F+    +           + +
Sbjct: 234 LFSATMPNAIRRLSKQYLDNPAEVTVKSERRTNDNITQRFLLIPHRAKMDAFTRILEVIN 293

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D +   I+FC  K     +  +L  +GFS  AI+G+I Q  R + +   K+G + ++VA
Sbjct: 294 YDAI---IVFCRTKHETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 350

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV NFD+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 351 TDVAARGLDVERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 410

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
           ++   +++ +  DL S++   EK
Sbjct: 411 RVTNARLEEM--DLPSVDEVNEK 431


>gi|261380720|ref|ZP_05985293.1| putative ATP-dependent RNA helicase RhlE [Neisseria subflava
           NJ9703]
 gi|284796437|gb|EFC51784.1| putative ATP-dependent RNA helicase RhlE [Neisseria subflava
           NJ9703]
          Length = 469

 Score =  178 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 154/442 (34%), Positives = 231/442 (52%), Gaps = 8/442 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L   D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALDGRDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QKLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    ++P+ IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKDPETIEVERVDDQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK I +K+  L   +  + P  ++          K     +KS G+   KK       
Sbjct: 360 KIEKYIGRKLPELT--IEGMEPTRKRKSAGAKPKG-KGGWGDRKSGGWRGDKKPAKEGFG 416

Query: 419 HIPLKESEKISKLQQDIQENDA 440
                E  K    ++D  + D 
Sbjct: 417 GKARGEGHKKDGFKKDGFKKDG 438


>gi|167585532|ref|ZP_02377920.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
          Length = 408

 Score =  178 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 228/391 (58%), Gaps = 9/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFESLGLAEPLVKAVNELGYTSPTPIQSQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   +     R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTFYAEHHHAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L RG D+++ TPGR+LDH  +  + ++ ++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALRRGVDIVVATPGRLLDHMQQKTIDLSQLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAET+            ++     
Sbjct: 181 RRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKI 385
           +  IE+LI++++  + + G     N   E I
Sbjct: 358 LRDIERLIKREIPQEVIPGFEPDPNAKPEPI 388


>gi|324506599|gb|ADY42814.1| Eukaryotic initiation factor 4A [Ascaris suum]
 gi|324507947|gb|ADY43360.1| Eukaryotic initiation factor 4A [Ascaris suum]
          Length = 415

 Score =  178 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 201/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  V   G+ KP+ IQ + I     + DV   AQ+GTGKTA+F + +L 
Sbjct: 43  SFDDMNLKEDLLRGVYAFGFEKPSAIQQRAIVPCCMKRDVIAQAQSGTGKTATFSVSVLQ 102

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++    V+    L++ PTRELA Q+       G+   +     IGG       +KLE 
Sbjct: 103 NIDESIPEVQA---LVMAPTRELAQQIQKVMVSLGEYMGVKCHACIGGTNVRDDQRKLES 159

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I  +   +P   Q +
Sbjct: 160 GVHIVVGTPGRVNDMIQRQSLQTSAIKMFVLDEADEMLSRGFKDQIYEVFKCMPNDVQVV 219

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+ +V+  F+ +P RI V     T E I   ++    +  K   L       
Sbjct: 220 LLSATMPAEVLEVTNRFMNDPVRILVKKEELTLEGIRQFYIDVEKEEWKFETLCDL--YQ 277

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IFCN ++ V  L + + K+ ++V  +HG+++Q  R  I+  F+ G+ ++++ 
Sbjct: 278 TVNVTQAVIFCNTRRKVDYLANQMTKEKYTVSCMHGDMEQSERDLIMREFRSGSSRVLIT 337

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V ++D + +  IE
Sbjct: 338 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTEQDTRQLKDIE 397

Query: 362 KLIEKKVDWLNGDLSSL 378
                +++ +  D+++L
Sbjct: 398 SFYNTQIEEMPMDIANL 414


>gi|24112165|ref|NP_706675.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 2a str. 301]
 gi|30062282|ref|NP_836453.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 2a str. 2457T]
 gi|110804797|ref|YP_688317.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 5 str. 8401]
 gi|24051003|gb|AAN42382.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str. 301]
 gi|30040527|gb|AAP16259.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str.
           2457T]
 gi|110614345|gb|ABF03012.1| putative ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401]
 gi|281600121|gb|ADA73105.1| putative ATP-dependent RNA helicase [Shigella flexneri 2002017]
 gi|313650305|gb|EFS14717.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri 2a str.
           2457T]
 gi|332759696|gb|EGJ89999.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri
           4343-70]
 gi|332760467|gb|EGJ90756.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri
           2747-71]
 gi|332763287|gb|EGJ93529.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-671]
 gi|332767959|gb|EGJ98145.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Shigella flexneri 2930-71]
 gi|333006587|gb|EGK26086.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri VA-6]
 gi|333021182|gb|EGK40438.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-304]
          Length = 406

 Score =  178 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 160/407 (39%), Positives = 237/407 (58%), Gaps = 6/407 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSVAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
             IEKL++K++  +       +P ++   I      R    +  K  
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQRGGIRLMNKRK 404


>gi|18310378|ref|NP_562312.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens str. 13]
 gi|110801126|ref|YP_696091.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens ATCC
           13124]
 gi|110803627|ref|YP_698708.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens SM101]
 gi|18145058|dbj|BAB81102.1| ATP-dependent RNA helicase [Clostridium perfringens str. 13]
 gi|110675773|gb|ABG84760.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens ATCC 13124]
 gi|110684128|gb|ABG87498.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens SM101]
          Length = 528

 Score =  178 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 149/410 (36%), Positives = 238/410 (58%), Gaps = 11/410 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ A+ D G+ +P+ IQ ++IP+ L+ HD+ G AQTGTGKTA+F   ++
Sbjct: 4   IKFDDLGLKESLLKAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGCAII 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +    + + P+ LIL PTRELA QV +   + GK+  L+V  + GG P + Q + L+
Sbjct: 64  NNADFSG-KKKSPKALILAPTRELAIQVNEELVRLGKHEKLSVLPIYGGQPIDRQIRALK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+++ TPGR+LD   R  L +N+I  LV+DEAD ML+MGFI  ++ I   +   RQT
Sbjct: 123 NGVDIVVGTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDRQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  +++K++ N+++   +      SS   +    F        +   L +  + 
Sbjct: 183 LLFSATMPPQIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRDRFETLCR--VL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D     IIFC  KK V  +   ++ +G+ V  +HG++ Q  R++ L  FKEG++  +V
Sbjct: 241 DFDEPNAAIIFCKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEGSLDFLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV N+D+P   E+Y+HRIGRTGRA R G A++LV  ++   +  I
Sbjct: 301 ATDVAARGIDVESVTHVINYDLPQDNESYVHRIGRTGRANREGVAYSLVTPKEYMMLKQI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN--NPIPQKSTGFDR 408
           +K  + K+      +    P +++I   +HN+   N  + I + S  F +
Sbjct: 361 QKHTKSKI------IRKAVPTVDEIFQNKHNNIINNVKSTIEEASEDFQK 404


>gi|241663607|ref|YP_002981967.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12D]
 gi|240865634|gb|ACS63295.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
          Length = 493

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 169/435 (38%), Positives = 251/435 (57%), Gaps = 8/435 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F   GL P V+ A+ ++GY KPTPIQ   IP+V    DV G AQTGTGKTA F LP++
Sbjct: 13  VTFDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGRDVMGAAQTGTGKTAGFSLPII 72

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L         P        IL PTRELA QV DN  KY K   L  A++ GG+    Q
Sbjct: 73  HNLLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQ 132

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L RG ++L+ TPGR+LDH  +  + ++ + +LV+DEADRMLDMGF+P +Q I +L+P
Sbjct: 133 TEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLP 192

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCAL 234
             RQTLLFSAT + E++K++ ++L++P+ IEV   ++TAE +          + +     
Sbjct: 193 AHRQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATAENVRQVIYTVPDNHKQAALVH 252

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L +    Q   +  I+F N K     L  +LE++G +  AIHG+  Q  RM+ L  FK+G
Sbjct: 253 LLKQRAEQGLPRQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQG 312

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           T+ ++VA+D+AARGLDI  +  V NFD+P  AE+Y+HRIGRTGRAG  G A +L A  D 
Sbjct: 313 TVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDE 372

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           + +  IEKLI++ +      L+  +P  E+    +     +     +     +R ++N +
Sbjct: 373 RLLADIEKLIKRNLPR--EQLADFDPTGEQARDRERRERDEKRARGEVRRARERDERNGA 430

Query: 415 SQKSHIPLKESEKIS 429
               H  ++ + + S
Sbjct: 431 RVLDHTIVRPAFRPS 445


>gi|109896747|ref|YP_660002.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c]
 gi|109699028|gb|ABG38948.1| ATP-dependent RNA helicase CsdA [Pseudoalteromonas atlantica T6c]
          Length = 579

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 149/381 (39%), Positives = 229/381 (60%), Gaps = 8/381 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL L  +++ A+   GY KPTPIQ + IPL+++ HD+ G AQTGTGKTA+F LPML
Sbjct: 7   LTFKDLNLPAELLQALEKVGYEKPTPIQAQCIPLIMEGHDLLGTAQTGTGKTAAFALPML 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++   +  +    L+L PTRELA QVA+ F+ Y         L I  G  ++ Q ++L
Sbjct: 67  ANVDANNSNTQ---LLVLAPTRELAIQVAEAFQVYASFSRKLNVLPIYGGSSYDNQIRQL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA V++ TPGR++DH  +G L ++N++ LV+DEAD ML MGFI  ++ I S  P  RQ
Sbjct: 124 RRGAQVVVGTPGRVIDHIKKGTLKLDNLKFLVLDEADEMLRMGFIDDVEWILSHAPAERQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM D ++K+++ +L +PK++++ +  +TA TI+  +      +          +
Sbjct: 184 TALFSATMPDPIRKITKRYLSDPKQVKIESKVATASTIKQRYCQVAGHHK---LEALTRI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   + L   L  +G++V  ++G+I Q SR + +   K G I ++
Sbjct: 241 MEVEEFDAVIIFVRTKTATMELSEKLSARGYAVEPLNGDIPQNSRERTVERLKRGKIDIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+  V HV N+DVP   E+Y+HRIGRTGRAGR G A   ++  + + + +
Sbjct: 301 VATDVVARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAGRQGDAILFISHREKRMLFS 360

Query: 360 IEKLIEKKVDWLN-GDLSSLN 379
           IE+   + +D +    +S LN
Sbjct: 361 IERATRQSIDPMPIPSISQLN 381


>gi|269104692|ref|ZP_06157388.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268161332|gb|EEZ39829.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 430

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 170/430 (39%), Positives = 247/430 (57%), Gaps = 12/430 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G S ++V A+ + GY K TPIQ + IP + + HDV   AQTGTGKTA+F LP++
Sbjct: 1   MSFSAQGFSQELVKALTEIGYEKLTPIQKQAIPQLRRGHDVLANAQTGTGKTAAFSLPII 60

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +            R LIL PTREL  Q+A+N + Y +  +LT   + GG     Q KK
Sbjct: 61  QKMLDNPQPRSRMNVRALILAPTRELVEQIANNIKDYTRYTDLTTVAVFGGRKIATQEKK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+L+H     +L++NIE LV DEADRMLDMGFI  I+ I S V  T 
Sbjct: 121 LESGCDILVATPGRLLEHLELQNVLLSNIEFLVFDEADRMLDMGFISAIRTILSNVNSTP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT + ++ K++   L  PKRI V   +STAET+ H     Y    ++   +   
Sbjct: 181 QIMLFSATFSSQMNKLAGELLNKPKRISVTPENSTAETVAH---VVYPVDEERKREMLSE 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +   +  ++F N K+    L   LE  G      HG+  Q +R + L  FKEG  ++
Sbjct: 238 LIGKKNWQQVLVFVNYKETANQLVEELELDGIKAVLCHGDKAQGARRRALKEFKEGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+++AARGLDI  + HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+   + 
Sbjct: 298 MVATEVAARGLDIQGLPHVVNYDMPFLAEDYVHRIGRTGRAGQQGHAVSFVSREEELTLI 357

Query: 359 AIEKLIEKKV---DWLNGDLSSLNPPLEKIDIA---QHNHARKNNPIPQKSTGFDRRKKN 412
            IE+LI +++     +  +  S +  LEK++     +    R NNP   KS+  +RR + 
Sbjct: 358 QIERLIGQRIHRVQLVGYEPKSRDALLEKMNTKASFRDRRGRTNNPNEDKSSA-ERRARL 416

Query: 413 YSSQKSHIPL 422
             + ++   L
Sbjct: 417 RKAIQNKAKL 426


>gi|77359468|ref|YP_339043.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874379|emb|CAI85600.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
          Length = 408

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 136/391 (34%), Positives = 204/391 (52%), Gaps = 9/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F++  L  K++ A+   GY  PT IQ + IP  LQ  D+   A TGTGKTA+F++P +
Sbjct: 1   MQFSEFDLDNKLLDAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R      R L++ PTRELA Q+ +  E   K  NL + ++ GGI +    +  
Sbjct: 61  QYLLDFPRRDPGFARVLVMTPTRELAYQIHEQCELLAKRTNLKIGVVTGGINYGTHKEIF 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+  D+LI TPGR++++         ++E+L+IDEADRMLDMGF   +  I       RQ
Sbjct: 121 EKNNDILIATPGRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEAKNRRQ 180

Query: 180 TLLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             LFSAT   D +++ +E  L +P  +E  +       I          + K    L   
Sbjct: 181 CFLFSATLEGDSVERFAETTLNDPALLEAESSRKEKAKIHQWVHLADDYHHKLE--LLVN 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +   +   I+F   ++ +  L   L         + G + Q  RMK + NF  G  ++
Sbjct: 239 TLNGPDVTKAIVFVKTRERLETLIGELTTNDVKAAWLRGEMPQDKRMKAMENFHSGKTRI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+ HV NFD+P  A+ Y+HRIGRTGRAG+ G A +LV   DI  + 
Sbjct: 299 LVATDVAARGIDVADISHVINFDLPRTADIYVHRIGRTGRAGKKGIAISLVEAHDIGILY 358

Query: 359 AIEKLIEKK-----VDWLNGDLSSLNPPLEK 384
            IE+ IE+K     +  L        PP +K
Sbjct: 359 KIERYIEQKLKRRVIKGLEPKHKEAKPPAKK 389


>gi|224134991|ref|XP_002327540.1| predicted protein [Populus trichocarpa]
 gi|222836094|gb|EEE74515.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 140/419 (33%), Positives = 221/419 (52%), Gaps = 17/419 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+G    V+  +  AG+ +PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP + 
Sbjct: 92  SFHDVGFPDYVLQEISKAGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAII 151

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA Q+     K+G +  +    + GG+P   Q + L
Sbjct: 152 HVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEAAKFGASSRIKNTCIYGGVPKGPQVRDL 211

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 212 QKGVEIVIATPGRLIDMMESHHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 271

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL +SAT   E+++++   L NP ++ + +P   A       V   ++  K    L +LL
Sbjct: 272 TLYWSATWPKEVEQLARQSLYNPYKVIIGSPDLKANHAIRQHVDIVSENQKY-NKLVKLL 330

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +IF + KK    +   L   G+   +IHG+  Q  R  +LS FK G   +M
Sbjct: 331 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 390

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD+ DV +V N+D P   E+Y+HRIGRTGRAG  G A+T     + +    
Sbjct: 391 TATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAGNARFAKE 450

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           +  ++E+    ++ +L+++              AR   P+     GF  R + YS  +S
Sbjct: 451 LVTILEEAGQKVSPELTAM--------------ARGAPPLLSGHGGFRDRGRGYSGGRS 495


>gi|90579695|ref|ZP_01235504.1| ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90439269|gb|EAS64451.1| ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 455

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 161/445 (36%), Positives = 248/445 (55%), Gaps = 7/445 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL+  +V AV + GY  PTPIQ K IP+ L   ++   AQTGTGKTA FVLP+L
Sbjct: 1   MPFSKLGLNDSIVKAVTEMGYTSPTPIQEKAIPVALTGKNLMAAAQTGTGKTAGFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L+ G   R +  R LIL PTRELA QV DN ++Y K+ NLT   + GG+ +E Q ++L
Sbjct: 61  QMLDDGTKVRAKRIRALILAPTRELAVQVEDNIKQYSKHLNLTSMAMYGGVDYEPQKRRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + IEILV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IEGVDILVATPGRLLDMYTKRAIHFDAIEILVLDEADRMLDMGFIEDINKIVERLPVDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT++D+++ +++  ++NP  I   + +  A                  + L   L
Sbjct: 181 NMLFSATLSDQVRFLAKTAVRNPIEI---SVAKDASADPKIDQWLVTVDKDMKSALLSHL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      +IF   K     L   LEK+G S  + H    Q  R ++L +FK G +Q +
Sbjct: 238 IQEQKWDQALIFIETKHGAAKLVTQLEKRGISAESFHSGRSQAVRSQLLEDFKNGKLQYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ +A+RG+DI  +  V N+D+P   E Y+HRIGRTGRAG  G+A + V++++ K++  
Sbjct: 298 IATGVASRGIDIEQLTRVVNYDLPFPPEEYVHRIGRTGRAGASGEAISFVSRDNFKNLCM 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE L+   +    + G +   + P+  ++  +    +   P    S   +R+ +  +  K
Sbjct: 358 IESLLGHLITRKEVEGFVPKKDVPVSVLN-YKPKFKKPMTPRDGDSENSERKPRRDTRTK 416

Query: 418 SHIPLKESEKISKLQQDIQENDADS 442
           ++ P  E  K  K ++     D D+
Sbjct: 417 NNAPRGEKTKSPKPKRRKPITDRDT 441


>gi|138893877|ref|YP_001124330.1| DEAD-box ATP dependent DNA helicase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265390|gb|ABO65585.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Geobacillus
           thermodenitrificans NG80-2]
          Length = 467

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 156/382 (40%), Positives = 234/382 (61%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS +V+ A+   G+ + TPIQ KTIPL LQ  DV G AQTGTGKTA+F +P++ 
Sbjct: 3   TFQELGLSKEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +  + + L++ PTRELA QV++   K G    + V  + GG   E Q + L++
Sbjct: 63  KVDV---KNGVIQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGRI+DH NRG L + ++  +V+DEAD ML+MGFI  I+ I   VP  RQTL
Sbjct: 120 HPHVIVGTPGRIIDHINRGTLRLEHVRTVVLDEADEMLNMGFIEDIEAILRHVPTERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+ +P+ ++V     T   I+         + KK   +   L  
Sbjct: 180 LFSATMPDPIRRIAERFMNDPELVKVKAKEMTVPNIQQ---YYLEVHEKKKFDILTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G++   IHG++ Q  R+ +L  FKEG+I+++VA
Sbjct: 237 IQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   +I  +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++K++ +     +LN  LE
Sbjct: 357 RTTKRKMERMKP--PTLNEALE 376


>gi|194442237|ref|YP_002040055.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194400900|gb|ACF61122.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
          Length = 453

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 165/435 (37%), Positives = 243/435 (55%), Gaps = 22/435 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 QMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKIDIAQHNH--------------ARKNNPIPQ 401
             IEKL++K++  +   G     +   E I   +                  R   P  Q
Sbjct: 358 RDIEKLLKKEIPRITTPGYEPDPSIKAEPIQNGRQQRGGGGRGRGQNQGGAGRSQQPRRQ 417

Query: 402 KSTGFDRRKKNYSSQ 416
            S     + K  + +
Sbjct: 418 DSGAAKAKPKPRTGE 432


>gi|308322209|gb|ADO28242.1| eukaryotic initiation factor 4a-iii [Ictalurus furcatus]
          Length = 406

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 34  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ 93

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 94  CLDI---QVRETQALILAPTRELAGQIQKVLLALGDFMNVQCHACIGGTNVGEDIRKLDY 150

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 151 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 210

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 211 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 268

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 269 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 328

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 329 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 388

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 389 QYYSTQIDEMPMNVADL 405


>gi|242280538|ref|YP_002992667.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
 gi|242123432|gb|ACS81128.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
          Length = 493

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 146/466 (31%), Positives = 236/466 (50%), Gaps = 11/466 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F       +++  +   GY  PTPIQ K IP VL+  DV G+AQTGTGKTA+F LP++
Sbjct: 1   MSFKQFSFDRRIMAGIHACGYETPTPIQTKAIPEVLKGRDVMGLAQTGTGKTAAFALPIM 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L + +   + P  + +L PTRELA Q+ +NF + G    +  A + GG+    Q +  
Sbjct: 61  QRLLEKKFSGQGPIRVLVLAPTRELALQIHENFMELGVEAGIRSAAVFGGVGAMPQIQAA 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R + ++ C   R+LD  N+G + ++ ++ LV+DEADRMLDMGF+P I+ I S +P  RQ
Sbjct: 121 RRSSVIVACPG-RLLDLMNQGVIKLDKVDTLVLDEADRMLDMGFLPDIRKIMSKLPQRRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM D+++ +++  L  P  ++V   +         +  +    +     + +  
Sbjct: 180 NLLFSATMPDDIRDLADKILYRPATVQVANTAPAKTVEHVFYPVSQHLKNNLLFKVLEQT 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + ++F   K    NL   L  +G     + GN+ Q  R + L  F++G+ ++M
Sbjct: 240 DY----DSLLVFTRTKHKAKNLARRLAARGHKATFLQGNMSQNQRQRALDGFRDGSFKVM 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D   + HV N DVP+ AE Y HRIGRTGRAGR G AF+ V ++D++ +  
Sbjct: 296 VATDIAARGIDCDRITHVVNLDVPDTAETYTHRIGRTGRAGRSGSAFSFVTRDDLRLMRE 355

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK----NNPIPQKSTGFDRR-KKNYS 414
           IEK +   ++    +    + P      A+    RK      P  ++  G  R+  +   
Sbjct: 356 IEKAVGYSIEHRTLEDFDYDKPNTHPAPAKRGGGRKPAADRKPAGERRPGRGRKPAEARD 415

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
             +S  P  E +   + +       +       +      P ++ K
Sbjct: 416 GDESRKPAGERKSGGRRKPGGGRKPSGGPAKSSDERRDSRPSSKRK 461


>gi|254251488|ref|ZP_04944806.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
 gi|124894097|gb|EAY67977.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
          Length = 480

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 161/400 (40%), Positives = 233/400 (58%), Gaps = 9/400 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 4   MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 63

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 64  QRLHTFYAEHRNAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 123

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 124 DALKRGVDIVVATPGRLLDHMQQKTIDLSSLDILVLDEADRMLDMGFIHDIKRVLAKLPP 183

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAET+            ++     
Sbjct: 184 RRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHL 243

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 244 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALTEFKNSTL 300

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 301 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 360

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHAR 394
           +  IE+LI++++  + + G     N   E I   +    R
Sbjct: 361 LRDIERLIKREIPQEVIAGFEPDPNAKPEPIQQRRGQQPR 400


>gi|56414080|ref|YP_151155.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|167550495|ref|ZP_02344252.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|168240684|ref|ZP_02665616.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168263681|ref|ZP_02685654.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168466416|ref|ZP_02700278.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|194451116|ref|YP_002044848.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197363003|ref|YP_002142640.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198243732|ref|YP_002214783.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|207856257|ref|YP_002242908.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|56128337|gb|AAV77843.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|194409420|gb|ACF69639.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|195631083|gb|EDX49669.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197094480|emb|CAR59997.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|197938248|gb|ACH75581.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205324518|gb|EDZ12357.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205339744|gb|EDZ26508.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205347690|gb|EDZ34321.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206708060|emb|CAR32351.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|322616296|gb|EFY13205.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619546|gb|EFY16421.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622758|gb|EFY19603.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628670|gb|EFY25457.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631607|gb|EFY28363.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637134|gb|EFY33837.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641666|gb|EFY38302.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644539|gb|EFY41079.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322654208|gb|EFY50531.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658123|gb|EFY54390.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663597|gb|EFY59799.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322670333|gb|EFY66473.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671569|gb|EFY67691.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676925|gb|EFY72992.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682850|gb|EFY78869.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686529|gb|EFY82511.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194574|gb|EFZ79767.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199095|gb|EFZ84191.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202050|gb|EFZ87109.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208924|gb|EFZ93861.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213909|gb|EFZ98679.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215239|gb|EFZ99984.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220842|gb|EGA05280.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227299|gb|EGA11467.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229917|gb|EGA14040.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233142|gb|EGA17238.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240877|gb|EGA24919.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243194|gb|EGA27214.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248733|gb|EGA32661.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251737|gb|EGA35604.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323261448|gb|EGA45029.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267879|gb|EGA51358.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|326622538|gb|EGE28883.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 453

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 165/435 (37%), Positives = 243/435 (55%), Gaps = 22/435 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 QMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKIDIAQHNH--------------ARKNNPIPQ 401
             IEKL++K++  +   G     +   E I   +                  R   P  Q
Sbjct: 358 RDIEKLLKKEIPRITTPGYEPDPSIKAEPIQNGRQQRGGGGRGRGQNQGGAGRSQQPRRQ 417

Query: 402 KSTGFDRRKKNYSSQ 416
            S     + K  + +
Sbjct: 418 DSGAAKAKPKPRTGE 432


>gi|152995016|ref|YP_001339851.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150835940|gb|ABR69916.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 463

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 172/469 (36%), Positives = 263/469 (56%), Gaps = 16/469 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ D GY +P+ IQ + IP +L+  DV   AQTGTGKTA F LP+L
Sbjct: 5   MSFNKLGLSAPILKAIEDQGYTEPSAIQAQAIPAILEGQDVMAAAQTGTGKTAGFTLPLL 64

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            IL KG   +    R L+L PTRELAAQVA++ + YG++ +L   ++ GG+    Q   L
Sbjct: 65  EILSKGENAQSNQVRALVLTPTRELAAQVAESVKNYGQHLSLKSTVVFGGVKINPQMMAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGAD+LI TPGR++D +N+  +  + +E+LV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 125 RRGADILIATPGRMMDLYNQKAVRFDKLEVLVLDEADRMLDMGFIHDIKKILAILPKKRQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I   + +    T        +    K+   L   L
Sbjct: 185 NLLFSATFSPEIRQLAKGLVNNPIEI---SVTPRNATAVSVEQWLHPVDKKRKTELLIQL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       ++F   K     +   LE  G    AIHGN  Q +R + L++FKEG I+++
Sbjct: 242 IADGRWDQALVFSRTKHGANKITKQLEDAGIRASAIHGNKSQGARTRALADFKEGRIRIL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + HV NFD+P+ AE+Y+HRIGRTGRAG  GKA +LVA +++  + A
Sbjct: 302 VATDIAARGLDIEQLPHVVNFDLPDVAEDYVHRIGRTGRAGATGKAISLVAADELDQLRA 361

Query: 360 IEKLIEKKVDWLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQKST---GFDRRKKNYS 414
           IE+L +K ++    D  + +   P   +D       +   P  Q +    G   ++    
Sbjct: 362 IERLTQKLIERRYEDDFMPTHMLPDTTLDTRPIKPNKPKRPREQTNGPRQGNGAKQGGNP 421

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
           +++ + P   + + S  + ++        G R      + P  R +  D
Sbjct: 422 AKQGNAPKSGNRRPSAPKAEMT----PGQGLRSK---PLAPARRNRKPD 463


>gi|33594279|ref|NP_881923.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|33564354|emb|CAE43658.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|332383691|gb|AEE68538.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
          Length = 477

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 163/432 (37%), Positives = 248/432 (57%), Gaps = 18/432 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD GL P ++  + D GY  PTPIQ + IP+V++  DV G AQTGTGKTA+F LP+L 
Sbjct: 18  TFADFGLHPLLLKLIADTGYTNPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILH 77

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QV ++ ++Y  +  L  A++ GG+    Q 
Sbjct: 78  RLMPLANTSASPARHPVRALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQK 137

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +VL+ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF+P ++ I  L+P 
Sbjct: 138 EALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPA 197

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT ++E++K+  ++L +P  IEV   ++TA+T+       +    +   +  
Sbjct: 198 QRQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATADTVTQIAYQMHGDTKRAAVVHL 257

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                   +K  I+F N K     L   LE+ G    +IHG+  Q  RMK L  FK G +
Sbjct: 258 ---VKSRGLKQVIVFSNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKAGDL 314

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLD+  V  V N+D+P  AE+Y+HRIGRTGRAG  G+A  L   ++ ++
Sbjct: 315 EVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEERY 374

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  IEKLI+++V     +L +        D+   +H R  +   ++  G DR +    + 
Sbjct: 375 LLDIEKLIKRQVPRGKLELPA--------DLVARSHGRDRDAPRER--GADRHRGERCTS 424

Query: 417 KSHIPLKESEKI 428
            +  P +  +++
Sbjct: 425 GAAAPRQPVDEL 436


>gi|320527000|ref|ZP_08028189.1| putative ATP-dependent RNA helicase RhlE [Solobacterium moorei
           F0204]
 gi|320132585|gb|EFW25126.1| putative ATP-dependent RNA helicase RhlE [Solobacterium moorei
           F0204]
          Length = 459

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 160/415 (38%), Positives = 238/415 (57%), Gaps = 12/415 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F DL L   ++ AV  A Y  P+PIQ K IP++L+  D+   AQTGTGKTA+F LP+L
Sbjct: 1   MNFTDLELKEPILSAVNKAKYETPSPIQEKAIPVMLEGKDIVACAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE    +    R L+L PTRELA Q+ +NF+K+G+   L    + GG P   Q K L 
Sbjct: 61  NKLEYK--KKHQIRALVLTPTRELAVQIFENFKKFGRYLKLRACCVYGGAPSGPQRKALR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+LI TPGR+ D   +G++++++IE+ V+DEADRMLDMGFI  ++ I S +P  RQT
Sbjct: 119 SGCDILIATPGRLNDFMVQGEIILSDIEVFVLDEADRMLDMGFIGDVRTIASRIPEARQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSATM  E+++++   L +P  I V  P+S AETI    V       K+     + + 
Sbjct: 179 VMFSATMPKEIKELANELLHDPVDIRVAPPASPAETITQYLVYCEKADKKRL---LKDML 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   I+F   K     L   L + G  V  IHG+  Q  R   L  F+   + ++V
Sbjct: 236 VSPEVTKAIVFTRTKIGADRLTKKLIEDGIKVLTIHGDKTQGQRQNALQRFRTNQVDVLV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + HVFN+D+P   E+YIHRIGR GRAG+ G + +L   E++  + +I
Sbjct: 296 ATDVAARGIDISGISHVFNYDLPEEDESYIHRIGRAGRAGKEGISISLCCHEELGLLASI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           EK+++K++  +  + S     L++    +   A K+N  P      D R  +  S
Sbjct: 356 EKMLKKEIPLIRTEYS---IELKR----KKASADKSNRRPSFKKKLDSRSGSDKS 403


>gi|119357571|ref|YP_912215.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354920|gb|ABL65791.1| ATP-dependent RNA helicase CsdA [Chlorobium phaeobacteroides DSM
           266]
          Length = 589

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 137/372 (36%), Positives = 218/372 (58%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L L   ++ A+ + GY  PTPIQ +TIPL+L+  D+ G AQTGTGKTA+F LP+L+
Sbjct: 10  NFRSLQLIEPLMKALEEVGYENPTPIQAQTIPLLLEGRDLLGQAQTGTGKTAAFALPILS 69

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            +   R     P+ L+L PTRELA QVA+ F +Y +       L I  G  +  Q + L+
Sbjct: 70  NITIARRE---PQALVLAPTRELAIQVAEAFHRYAEYLKGFHVLPIYGGQDYGIQLRMLK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR++DH  RG L ++ ++ LV+DEAD ML MGFI  ++ I    P  RQ 
Sbjct: 127 QGVHVVVGTPGRVMDHMRRGSLNLDGLQCLVLDEADEMLRMGFIDDVEWILDQTPKGRQV 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT+   ++++++ +L NP  I +   ++T E I   +      +          ++
Sbjct: 187 ALFSATLPVPIRRIAQKYLNNPAEITIQNKTTTVEAIRQRYWIVGGSHKLDVLTRILEVE 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +   +IF   K   + L   L+ +G+   A++G++ Q  R + +   K G + +++
Sbjct: 247 PFDGI---LIFVRTKTMTLELAEKLQARGYDASALNGDMAQNMRERTVEQLKSGALNIVI 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G+A   V+  +   + AI
Sbjct: 304 ATDVAARGLDVDRISHVINYDIPSDTESYVHRIGRTGRAGRSGEAILFVSPREKNMLYAI 363

Query: 361 EKLIEKKVDWLN 372
           EK   K+++ + 
Sbjct: 364 EKATRKRIELME 375


>gi|323953540|gb|EGB49406.1| DEAD/DEAH box helicase [Escherichia coli H252]
          Length = 453

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 160/391 (40%), Positives = 234/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  RTLIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRTLILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|218132094|ref|ZP_03460898.1| hypothetical protein BACEGG_03721 [Bacteroides eggerthii DSM 20697]
 gi|217985744|gb|EEC52085.1| hypothetical protein BACEGG_03721 [Bacteroides eggerthii DSM 20697]
          Length = 392

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 149/368 (40%), Positives = 224/368 (60%), Gaps = 3/368 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL ++  ++ A+ + GYV PTPIQ K IP +L   D+ G AQTGTGKTA+F +P++
Sbjct: 21  MTFKDLNITESILKAIEEKGYVNPTPIQAKAIPALLVGKDILGCAQTGTGKTAAFAIPII 80

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  ++     + LIL PTRELA Q+++  + Y K   +   ++ GG+    Q   L 
Sbjct: 81  QQLQADKSLNNSIKALILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRTQVNMLH 140

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+LD  N+G + +NNI+  V+DEADRMLDMGFI  I+ +   +P  +QT
Sbjct: 141 KGVDILVATPGRLLDLMNQGYVRLNNIQHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQT 200

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D +  ++ + L+ P +I +   SST + I       Y    K+ + L   + 
Sbjct: 201 LLFSATMPDTIISLTNSLLKQPVKISITPKSSTVDAI---EQTVYFVEKKEKSKLLISIL 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   ++ ++F   K N   +   L K G    AIHGN  Q +R   L NFK G I++M+
Sbjct: 258 HKTQGQSVLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQNARQSALENFKSGKIRVMI 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A +  ++E+ K ++ I
Sbjct: 318 ATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNSGTALSFCSQEERKLVNDI 377

Query: 361 EKLIEKKV 368
           +KL  KK+
Sbjct: 378 QKLTGKKL 385


>gi|303251558|ref|ZP_07337732.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649556|gb|EFL79738.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 619

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 140/372 (37%), Positives = 224/372 (60%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   ++ AV D G+V P+PIQ +TIP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 6   LTFADLGLPQSILDAVNDMGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++      R P+ L++ PTRELA QVAD  E++ KN      + +  G  ++ Q + L
Sbjct: 66  AQIDPT---KRHPQMLVMAPTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G+ V++ TPGRILDH  RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 KQGSQVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+Q+P+ +++     +A  I   +                  
Sbjct: 183 TALFSATMPEPIRRITRRFMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDA---LLRF 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++    E+ G+   A++G++ Q++R + L   K G + ++
Sbjct: 240 LEVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V NFD+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 300 VATDVAARGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359

Query: 360 IEKLIEKKVDWL 371
           IE L++K +D +
Sbjct: 360 IEHLMKKPIDEV 371


>gi|165975989|ref|YP_001651582.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876090|gb|ABY69138.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 619

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 140/372 (37%), Positives = 224/372 (60%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   ++ AV D G+V P+PIQ +TIP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 6   LTFADLGLPQSILDAVNDMGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++      R P+ L++ PTRELA QVAD  E++ KN      + +  G  ++ Q + L
Sbjct: 66  AQIDPT---KRHPQMLVMAPTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G+ V++ TPGRILDH  RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 KQGSQVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+Q+P+ +++     +A  I   +                  
Sbjct: 183 TALFSATMPEPIRRITRRFMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDA---LLRF 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++    E+ G+   A++G++ Q++R + L   K G + ++
Sbjct: 240 LEVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V NFD+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 300 VATDVAARGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359

Query: 360 IEKLIEKKVDWL 371
           IE L++K +D +
Sbjct: 360 IEHLMKKPIDEV 371


>gi|73620773|sp|Q4R3Q1|IF4A3_MACFA RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|67971846|dbj|BAE02265.1| unnamed protein product [Macaca fascicularis]
          Length = 411

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL P RELA Q+       G   N+     IGG       +KL+ 
Sbjct: 99  CLDI---QVRETQALILAPARELAVQIQKGLLTLGDYMNVQCHACIGGTNVGEDIRKLDY 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 216 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 274 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 334 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 393

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 394 QYYSTQIDEMPMNVADL 410


>gi|46143724|ref|ZP_00134573.2| COG0513: Superfamily II DNA and RNA helicases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208057|ref|YP_001053282.1| cold-shock DEAD box protein A-like protein [Actinobacillus
           pleuropneumoniae L20]
 gi|190149888|ref|YP_001968413.1| cold-shock DEAD box protein A-like protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303252206|ref|ZP_07338374.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|126096849|gb|ABN73677.1| cold-shock DEAD box protein A-like protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189915019|gb|ACE61271.1| cold-shock DEAD box protein A-like protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302648989|gb|EFL79177.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
          Length = 619

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 140/372 (37%), Positives = 224/372 (60%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   ++ AV D G+V P+PIQ +TIP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 6   LTFADLGLPQSILDAVNDMGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++      R P+ L++ PTRELA QVAD  E++ KN      + +  G  ++ Q + L
Sbjct: 66  AQIDPT---KRHPQMLVMAPTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G+ V++ TPGRILDH  RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 KQGSQVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+Q+P+ +++     +A  I   +                  
Sbjct: 183 TALFSATMPEPIRRITRRFMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDA---LLRF 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++    E+ G+   A++G++ Q++R + L   K G + ++
Sbjct: 240 LEVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V NFD+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 300 VATDVAARGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359

Query: 360 IEKLIEKKVDWL 371
           IE L++K +D +
Sbjct: 360 IEHLMKKPIDEV 371


>gi|41055130|ref|NP_957372.1| eukaryotic initiation factor 4A-III [Danio rerio]
 gi|82209617|sp|Q7ZVA6|IF4A3_DANRE RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|28277876|gb|AAH45939.1| Eukaryotic translation initiation factor 4A, isoform 3 [Danio
           rerio]
 gi|182892106|gb|AAI65833.1| Eif4a3 protein [Danio rerio]
          Length = 406

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 205/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 34  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ 93

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 94  CLDI---QVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDY 150

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q  
Sbjct: 151 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVC 210

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 211 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 268

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 269 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 328

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 329 TDVWARGLDVSQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 388

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 389 QYYSTQIDEMPMNVADL 405


>gi|260597188|ref|YP_003209759.1| ATP-dependent RNA helicase RhlE [Cronobacter turicensis z3032]
 gi|260216365|emb|CBA29399.1| Putative ATP-dependent RNA helicase rhlE [Cronobacter turicensis
           z3032]
          Length = 500

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 167/463 (36%), Positives = 257/463 (55%), Gaps = 15/463 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP+++ A+ + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 3   MSFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLL 62

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                        R  R LIL PTRELAAQV +N  +Y K  ++   ++ GG+    Q  
Sbjct: 63  QRLTAKAPHAQGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMM 122

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVLI TPGR+LD  ++  + ++ +E+LV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 123 KLRSGVDVLIATPGRLLDLEHQNAVKLDQVEVLVLDEADRMLDMGFIHDIRRVLAKLPPK 182

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L+NP+ +EV   ++ +E I       +    K+   L  
Sbjct: 183 RQNLLFSATFSDDIKTLAEKLLRNPEEVEVARRNTASEQI---TQHVHFVDKKRKRELLS 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L      +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK G I+
Sbjct: 240 YLIGDGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIR 299

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 300 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 359

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKI------DIAQHNHARKNNPIPQKSTGFDRR 409
             IE+++++++  +   G     + P E I         +            +    D  
Sbjct: 360 RDIERVLQREIPRMAIAGYEPDPSIPAEPIVNGRQGRGGRGGQGGGGGRGQGQPRRQDGE 419

Query: 410 KKNYSSQKSHIPLKESEKISKLQQDIQENDAD-SLGFRGNMPA 451
               S +++  P  E  + +  +   Q+ + +   G R   PA
Sbjct: 420 GSRSSGERARRPAGEGNRPAGERSRRQDGEGNRPSGERSRRPA 462


>gi|196250549|ref|ZP_03149239.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
 gi|196209898|gb|EDY04667.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
          Length = 467

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 156/382 (40%), Positives = 233/382 (60%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS +V+ A+   G+ + TPIQ KTIPL LQ  DV G AQTGTGKTA+F +P++ 
Sbjct: 3   TFQELGLSKEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +    + L++ PTRELA QV++   K G    + V  + GG   E Q + L++
Sbjct: 63  KVDV---KNGAIQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGRI+DH NRG L + ++  +V+DEAD ML+MGFI  I+ I   VP  RQTL
Sbjct: 120 HPHVIVGTPGRIIDHINRGTLRLEHVRTVVLDEADEMLNMGFIEDIEAILRHVPTERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+ +P+ ++V     T   I+         + KK   +   L  
Sbjct: 180 LFSATMPDPIRRIAERFMNDPELVKVKAKEMTVPNIQQ---YYLEVHEKKKFDILTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G++   IHG++ Q  R+ +L  FKEG+I+++VA
Sbjct: 237 IQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   +I  +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++K++ +     +LN  LE
Sbjct: 357 RTTKRKMERMKP--PTLNEALE 376


>gi|315645365|ref|ZP_07898490.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315279407|gb|EFU42713.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 506

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 167/432 (38%), Positives = 246/432 (56%), Gaps = 14/432 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL +SP ++ A+    Y +PTPIQ + IP VL   D+ G AQTGTGKTA+F +PM+
Sbjct: 17  MTFQDLNISPVILKALAKENYKEPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMI 76

Query: 61  TILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L +   +  M    R L+L PTRELA Q++DN + Y +   L    ++GG+  + Q +
Sbjct: 77  QLLNEQPPKPGMARRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQER 136

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++GAD+LI TPGR+LD  N+ ++ + ++EILV+DEADRMLDMGFI  ++ I S +P  
Sbjct: 137 ALQQGADILIATPGRLLDLMNQKRIDLQHVEILVLDEADRMLDMGFIHDVKRIISKMPSK 196

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTL FSATM  E+ ++ +  LQNP ++E+   SSTAE I+                   
Sbjct: 197 KQTLFFSATMPAEITQLVKTLLQNPVKVEITPVSSTAERIKQSVYLLETGNK---QKQLN 253

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++ + ++F   K+    +   L K   +  AIHGN  Q SR   L NFK G  +
Sbjct: 254 ELMKDPSIVSALVFTRTKRGADRVVRDLTKVNITAQAIHGNKSQVSRQTALKNFKSGETR 313

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++ HV NF++PN  E Y+HRIGRTGRAG  G A +    ++I  +
Sbjct: 314 VLVATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAISFCEVDEIPFL 373

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLE--KIDI------AQHNHARKNNPIPQKSTGFDRR 409
             IEKLI K +  +      ++  L   K+D       A+  +A+     P K  G   R
Sbjct: 374 RDIEKLIGKSIPEVKDHDFPMSSSLRSAKVDRSPKSGSARPGNAKSAAARPAKPKGDAAR 433

Query: 410 KKNYSSQKSHIP 421
           K    + +   P
Sbjct: 434 KPKADTARKPKP 445


>gi|333030152|ref|ZP_08458213.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
 gi|332740749|gb|EGJ71231.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
          Length = 404

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 145/415 (34%), Positives = 233/415 (56%), Gaps = 17/415 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L   V+ A+    + + TPIQ K IP++L+  D+  +AQTGTGKTA+F+LP+L
Sbjct: 1   MKFSELNLHDSVLEALDAMNFEESTPIQEKAIPIILENKDLIAVAQTGTGKTAAFLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +G+        +I+ PTRELA Q+    E +    +++   + GG    A  ++  
Sbjct: 61  DKLSEGKHIPDKVNCIIMSPTRELAQQIDQQMEGFSYFLSVSSVAIYGGSDGIAFEQQKR 120

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
               GA+V+I TPGR+L H   G + ++ ++  ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTMGAEVVIATPGRLLSHLKLGYVDLSEVKHFILDEADRMLDMGFFDDIMQIAQYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM D++QK+++N L NP+ I++       +       A Y  Y  +   +  
Sbjct: 181 RQTIMFSATMPDKIQKLAQNILHNPEEIKLAVSKPAEKI----LQAAYVCYEGQKLNIIN 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L S+   +  ++F + K  V  +  +L+K    V  IH +++Q++R ++L NFK G I 
Sbjct: 237 DLFSKSKSEKSLVFASSKAKVKEVARALKKMDLKVGEIHSDLNQKTREEMLQNFKAGNID 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+ ARG+D+ D+  V N+DVPN +E+Y+HRIGRT RA   G A T V  +D ++ 
Sbjct: 297 ILVGTDIIARGIDVDDIRLVINYDVPNDSEDYVHRIGRTARANNDGVAITFVNTKDQQNF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK---NNPIPQKSTGFDRR 409
             IE  +EK       D+  +  P E  D  ++   R+   N    +K+ G  R+
Sbjct: 357 LEIEDFLEK-------DIFKIPIPTEFGDAPEYTPKRRTQSNKGGFKKNRGSRRK 404


>gi|312885453|ref|ZP_07745092.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311302033|gb|EFQ79063.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 450

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 149/421 (35%), Positives = 240/421 (57%), Gaps = 6/421 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D   + +++ A+ DAGY + TP+Q K IP ++   DV GIAQTGTGKTA+++LP++
Sbjct: 3   VTFEDFNFNRQILNAIADAGYTEATPVQQKAIPPIMNGQDVMGIAQTGTGKTAAYMLPII 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  +      R +++ PTRELA Q+ +N +++ K  +L +  L GG+  + Q + ++
Sbjct: 63  MRLKYAQGSDA--RAIVIAPTRELALQIEENAKEFAKYTDLRIVSLYGGLGPKTQKELMD 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TPGR +D +  G ++   +E+LV+DEAD+M+DMGF+P I  I  +VP  RQ 
Sbjct: 121 KGVDIIVATPGRFMDVYLTGHMVTKKLEVLVLDEADKMMDMGFMPQINRILEVVPRKRQN 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+D++Q++S NFL+ P  +EV   ++ A+T+           +K   L + L  
Sbjct: 181 LLFSATMSDKIQELSSNFLEFPTVVEVTPQATPAQTVNQVLYHVPNMKTKINLLKKLLDA 240

Query: 241 SQDTMKNGIIFCNQK-KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             D  K  I    +     V      +     V  +H N  Q +R+  ++ FK   ++++
Sbjct: 241 PDDIKKLIIFCKTRVAAEDVYKFLLRKFGEKEVRVLHANKGQNTRINAINAFKNDEVKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RG+D+ DV HV NFDVP   E+Y+HRIGRTGRA + G+A T     +  +I  
Sbjct: 301 VATDVASRGIDVSDVSHVINFDVPVVYEDYVHRIGRTGRAFQSGEAITFCNPAEEYYIRK 360

Query: 360 IEKLIEKKVD--WLNGDL-SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           IEKLI +++    L  D+     P  E+ D  +    +K    P     F  +K     +
Sbjct: 361 IEKLIRQQIPVVLLPPDVFVDETPYEERQDQNKEIDLQKRKDDPDFKGAFHEKKTVNQRK 420

Query: 417 K 417
           K
Sbjct: 421 K 421


>gi|224539911|ref|ZP_03680450.1| hypothetical protein BACCELL_04822 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518465|gb|EEF87570.1| hypothetical protein BACCELL_04822 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 435

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 142/436 (32%), Positives = 235/436 (53%), Gaps = 10/436 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+ +V+ A+    + + TPIQ K+IP++L+  D+  +AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELQLNDQVLDALEAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
             L +G         +++ PTRELA Q+    E +     ++   + GG     FE Q K
Sbjct: 61  NKLSEGGHPEDAINCIVMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLMLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFFDDIMQIVKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++   L NP  +++       +       A Y  Y  +   + +
Sbjct: 181 RQTIMFSATMPAKIQQLANTILNNPAEVKLAVSRPADKI----VQAAYVCYENQKLGIIR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L ++ T +  IIF + K  V  +  +L+    +V  +H +++Q  R +++  FK G I 
Sbjct: 237 SLFAEQTPERVIIFASSKLKVKEVTKALKMMKLNVGEMHSDLEQAQREEVMHEFKAGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V +++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQSNF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEK---IDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
             IE  +E+ +  +         P  K    D     + R       K +G   +K + S
Sbjct: 357 KQIENFLERDIYKIPVPEELGESPEYKPRSYDGRGKRNFRAKGRNTNKGSGNAPKKGDAS 416

Query: 415 SQKSHIPLKESEKISK 430
             + + P K +    K
Sbjct: 417 KGRGNAPRKSANPSGK 432


>gi|326932134|ref|XP_003212175.1| PREDICTED: hypothetical protein LOC100549747 [Meleagris gallopavo]
          Length = 1561

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 158/475 (33%), Positives = 246/475 (51%), Gaps = 18/475 (3%)

Query: 1    MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F+LP+L
Sbjct: 983  LSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVL 1042

Query: 61   TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              L     +  + R L+L PTREL  QV    ++  +  ++T  L +GG+  + Q   L 
Sbjct: 1043 ERLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTSCLAVGGLDVKTQEAALR 1102

Query: 121  RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+LI TPGR++DH  N     ++++E+L++DEADRMLD  F   ++ I  L    RQ
Sbjct: 1103 SGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSKHRQ 1162

Query: 180  TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            T+LFSATMT+E++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 1163 TMLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSAL 1222

Query: 240  QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 1223 LTRTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQIDIL 1282

Query: 300  VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K +  
Sbjct: 1283 VATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 1342

Query: 360  IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH------ARKNNPIPQKSTGFDRRKKNY 413
            I K  +  V         +    EKI+  + +        R+   + Q     ++ KK  
Sbjct: 1343 IVKSAKTPVKARILPQDVILKFREKIENLEKDVYAVLCLEREEREMQQSEAQINKAKKQL 1402

Query: 414  SS----------QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
                        ++S    +E  K  KL + +QE D    G +     FM    R
Sbjct: 1403 EEGKQETATKGVERSWFQTREERKKEKLAKALQEFDLALRGKKKR-KKFMQDTQR 1456


>gi|167754851|ref|ZP_02426978.1| hypothetical protein CLORAM_00355 [Clostridium ramosum DSM 1402]
 gi|167704901|gb|EDS19480.1| hypothetical protein CLORAM_00355 [Clostridium ramosum DSM 1402]
          Length = 436

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 163/436 (37%), Positives = 250/436 (57%), Gaps = 11/436 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L   ++ AV +  Y  P+PIQ + IP ++   D+ G A+TGTGKTA+F LP+L
Sbjct: 1   MKFSELELIEPLLNAVKEMKYDIPSPIQEQAIPAIISGRDIFGCAKTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L       + PRT+   IL PTRELA Q+ + FE      NL  A++ GG+   +Q  
Sbjct: 61  QKLYLRDESEKYPRTIKALILAPTRELAIQINETFEAMNPQVNLKSAVIFGGVRQGSQVT 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           K+ RG DVLI TPGR++D +N+G + + ++E LV+DEADRMLDMGFI  I+ I   +P  
Sbjct: 121 KINRGIDVLIATPGRLIDLYNQGLVDLKHVEYLVLDEADRMLDMGFIKDIRKILRFIPRR 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            QT+LFSAT+ DE++ +  + L +P +I +++ + T E I             K  +   
Sbjct: 181 HQTMLFSATLPDEIKHLVSDLLNDPLKIMISSGNVTVEKINQSLYFVDKVNKAKLLIKLL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                  + N I+F   K+NV  LC  L K   +   IHG+  Q +R++ L+NFK   ++
Sbjct: 241 ---ENPQIYNAIVFVRTKRNVDTLCKKLIKAQITCEGIHGDKSQNARVRALNNFKNDKVR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VASD+AARG+DI ++ HV NFD+P++AENY+HRIGRT RAG  G+A T  + ++   +
Sbjct: 298 VLVASDIAARGIDIDELTHVINFDLPDQAENYVHRIGRTARAGASGEAITFCSFQEKALL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             I+K I + +  ++        P++ + I +  H  K     QKS    +  K    +K
Sbjct: 358 KDIQKFINQDIPVVDNPYY----PMKDLSIPEKKHKSKKKGETQKSRDKAKHLKQ-GQKK 412

Query: 418 SHIPLKESEKISKLQQ 433
           S +     +K SK ++
Sbjct: 413 SSVRTNNIKKNSKTKR 428


>gi|242024557|ref|XP_002432694.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212518164|gb|EEB19956.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 407

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + ++ 
Sbjct: 35  TFDRMGLREELLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISIIQ 94

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+      ++     L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 95  SLDTTVRETQVLC---LSPTRELAVQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDY 151

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 152 GQHVISGTPGRVFDMIRRRVLRTRFIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 211

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 212 LISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 269

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V  +HG++ Q+ R  I+  F+ G  ++++ 
Sbjct: 270 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSCMHGDMPQKERDAIMKEFRTGLSRVLIT 329

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 330 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIE 389

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 390 QYYSTQIDEMPMNVADL 406


>gi|312377148|gb|EFR24056.1| hypothetical protein AND_11649 [Anopheles darlingi]
          Length = 400

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 205/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L 
Sbjct: 28  TFNSMGLREELLRGIYAYGFEKPSAIQQRSIQPIVKGRDVIAQAQSGTGKTATFSISILQ 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++      ++     L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 88  SMDTTLRETQVLC---LSPTRELAVQIQKVILALGDFMNIQCHACIGGTNLGEDIRKLDY 144

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 145 GQHVVSGTPGRVFDMIKRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 204

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 205 LISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 262

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R +I+  F+ G  ++++ 
Sbjct: 263 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRSGQSRVLIT 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 323 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIE 382

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 383 QYYSTQIDEMPMNVADL 399


>gi|148825485|ref|YP_001290238.1| preprotein translocase subunit SecF [Haemophilus influenzae PittEE]
 gi|229846320|ref|ZP_04466428.1| preprotein translocase subunit SecF [Haemophilus influenzae 7P49H1]
 gi|89892371|gb|ABD78963.1| HI0231-like protein [Haemophilus influenzae]
 gi|148715645|gb|ABQ97855.1| preprotein translocase subunit SecF [Haemophilus influenzae PittEE]
 gi|229810413|gb|EEP46131.1| preprotein translocase subunit SecF [Haemophilus influenzae 7P49H1]
          Length = 613

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 141/405 (34%), Positives = 232/405 (57%), Gaps = 20/405 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 5   ITFNDLGLPEFILKAVSDLGFETPSPIQQACIPHLLSGNDVLGMAQTGSGKTAAFALPLL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E++ K  +   +  L GG  ++ Q + L
Sbjct: 65  AQIDPSE---KHPQMLVMAPTRELAIQVADACEQFVKYAHGSRIVTLYGGQRYDIQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 122 KQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+ +PK +++       E       + +  +  +        
Sbjct: 182 TALFSATMPEPIRRITKRFMNDPKEVKIKV---NNENAPDIEQSCWYVHGVRKNEALLRF 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 239 LEVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 299 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 358

Query: 360 IEKLIEKKVDWLN-------------GDLSSLNPPLEKIDIAQHN 391
           IE L++K ++ +                ++ +   LE  D+ Q+ 
Sbjct: 359 IEHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYR 403


>gi|187733875|ref|YP_001881017.1| ATP-dependent RNA helicase RhlE [Shigella boydii CDC 3083-94]
 gi|187430867|gb|ACD10141.1| putative ATP-dependent RNA helicase RhlE [Shigella boydii CDC
           3083-94]
 gi|320175218|gb|EFW50327.1| ATP-dependent RNA helicase RhlE [Shigella dysenteriae CDC 74-1112]
 gi|320183285|gb|EFW58140.1| ATP-dependent RNA helicase RhlE [Shigella flexneri CDC 796-83]
 gi|332097530|gb|EGJ02510.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 3594-74]
          Length = 454

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 158/391 (40%), Positives = 232/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK   I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSSDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|16764183|ref|NP_459798.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167992052|ref|ZP_02573150.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|16419327|gb|AAL19757.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|205329602|gb|EDZ16366.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261246078|emb|CBG23880.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267992563|gb|ACY87448.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157405|emb|CBW16894.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312911844|dbj|BAJ35818.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321226393|gb|EFX51444.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129127|gb|ADX16557.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332987751|gb|AEF06734.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 454

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 164/431 (38%), Positives = 244/431 (56%), Gaps = 8/431 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 QMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
             IEKL++K++  +   G     +   E I   +            ++ G   R +    
Sbjct: 358 RDIEKLLKKEIPRITTPGYEPDPSIKAEPIQNGRQQRGGGGGRGRGQNQGGAGRSQQPRR 417

Query: 416 QKSHIPLKESE 426
           Q S     + +
Sbjct: 418 QDSGAAKAKPK 428


>gi|168207624|ref|ZP_02633629.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens E str.
           JGS1987]
 gi|170661029|gb|EDT13712.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens E str.
           JGS1987]
          Length = 478

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 130/402 (32%), Positives = 225/402 (55%), Gaps = 6/402 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ A+ + GY  P+ +Q  +IP +L+  D+   +QTG+GKTASF +P+ 
Sbjct: 1   MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVC 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +V+    L+L PTRELA QV D     G+   +  A++ G  PF  Q ++L+
Sbjct: 61  EKINIEEKKVQC---LVLTPTRELAIQVKDELSNIGRIKKVRCAVIFGKQPFNEQIRELK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+ DH  RG L ++ +  +VIDEAD+ML MGFI  I++I   +   + T
Sbjct: 118 QRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT + E++++ E +++NP  +EV +     + IE    +      K          
Sbjct: 178 ALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEE---SAIEIEEKNKGKALWKCL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ I+FCN +  V ++   L+ +G +   +HG+++Q+ R++++ NF++   +++V
Sbjct: 235 YAYHPESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ +  +  V N++VP   E+Y+HRIGRTGRAGR GKA T V   + K+++ +
Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           E+ I  ++   +           KI         K +  P+K
Sbjct: 355 EEYIGYEIRKASLPSDDEVKAGRKIFKESQKVQLKESKKPKK 396


>gi|161614932|ref|YP_001588897.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168230715|ref|ZP_02655773.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168820033|ref|ZP_02832033.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194471685|ref|ZP_03077669.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|200390413|ref|ZP_03217024.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|161364296|gb|ABX68064.1| hypothetical protein SPAB_02686 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194458049|gb|EDX46888.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|199602858|gb|EDZ01404.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205334823|gb|EDZ21587.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205343118|gb|EDZ29882.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|320085093|emb|CBY94880.1| probable ATP-dependent RNA helicase DDX17 DEAD box protein 17;
           RNA-dependent helicase p72; DEAD box protein p72
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 454

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 164/431 (38%), Positives = 244/431 (56%), Gaps = 8/431 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 QMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
             IEKL++K++  +   G     +   E I   +            ++ G   R +    
Sbjct: 358 RDIEKLLKKEIPRITTPGYEPDPSIKAEPIQNGRQQRGGGGGRGRGQNQGGAGRSQQPRR 417

Query: 416 QKSHIPLKESE 426
           Q S     + +
Sbjct: 418 QDSGAAKAKPK 428


>gi|50122209|ref|YP_051376.1| ATP-dependent RNA helicase SrmB [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612735|emb|CAG76185.1| ATP-dependent RNA helicase [Pectobacterium atrosepticum SCRI1043]
          Length = 441

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 140/442 (31%), Positives = 228/442 (51%), Gaps = 8/442 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++L L   ++ A+ D GY +PT IQ + IP  ++  DV G A TGTGKTA+++LP + 
Sbjct: 5   NFSELDLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++  R +   PR LIL PTRELA QVAD    +  + +L +A + GG+ +    +   
Sbjct: 65  HLIDFPRKKSGPPRVLILTPTRELAMQVADQARAFAAHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ T GR++ +          +E L++DEADRMLDMGF   I++I     + +QT
Sbjct: 125 ENQDVVVATTGRLMQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ +             + +E+ +  S  E  +       A   K    L     
Sbjct: 185 LLFSATL-EGNAIKDFAERLLNEPVEIESDPSRRERKKILQWYYRADDLKHKTTLLCHQL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   IIF  +++ V  L   L + G + C + G + Q  R + +    +G + ++V
Sbjct: 244 KQPDVTRSIIFVRKRERVHELVSWLHEAGINSCYLEGEMVQAKRNEAIKRMSDGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HVFNFD+P  A+ Y+HRIGRTGRAGR G A + V   D   +  I
Sbjct: 304 ATDIAARGIDIDDVSHVFNFDLPRTADTYLHRIGRTGRAGRKGCAISFVEAHDHLLLGKI 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
            + + + +      +  L P  E    +     + +  +   +   ++++K     K  +
Sbjct: 364 SRYLNEPLK--PRVIEELRP--ETKAPSAKTTGKPSKKVL--AKRKEKKEKEKEKVKVKV 417

Query: 421 PLKESEKISKLQQDIQENDADS 442
             ++S+ + K +Q  Q+ D  S
Sbjct: 418 RDRDSKNVGKRRQATQKTDEPS 439


>gi|218193167|gb|EEC75594.1| hypothetical protein OsI_12293 [Oryza sativa Indica Group]
          Length = 404

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 132/377 (35%), Positives = 198/377 (52%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G+   ++  +   G+ KP+ IQ + +  ++   DV   AQ+GTGKT+   L +  
Sbjct: 32  SFDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQ 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I+      V+    LIL PTRELAAQ        G   N+ V   IGG       +KLE 
Sbjct: 92  IVNTAVREVQA---LILSPTRELAAQTERVMLAIGDYINIQVHACIGGKSIGEDIRKLEH 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++L++DEAD ML  GF   I ++   +P   Q  
Sbjct: 149 GVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQVC 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 209 LISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL--YD 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   +    F+V A+HG++ Q+ R  I+  F+ G  ++++ 
Sbjct: 267 TLTITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLIT 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V KEDI+ +  IE
Sbjct: 327 TDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILRDIE 386

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 387 QYYSTQIDEMPMNVADL 403


>gi|187925284|ref|YP_001896926.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
 gi|187716478|gb|ACD17702.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 515

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 173/454 (38%), Positives = 247/454 (54%), Gaps = 13/454 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGR-----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L         +  R  R LIL PTRELAAQV ++   YGK   L   ++ GG+    Q
Sbjct: 61  QRLNTMPAVTTGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G D+++ TPGR+LDH  +  + ++++EILV+DEADRMLDMGFI  I+ + + +P
Sbjct: 121 IGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT +DE++ +++N L +P  IEV   ++TAET+            ++    
Sbjct: 181 PKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTH 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 Q      ++F   K     L   L K   S  AIHGN  Q +R + L+ FK+GT
Sbjct: 241 L---IKQHNWFQVLVFTRTKHGANRLAEQLTKDSISALAIHGNKSQSARTRALAEFKDGT 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARG+DI  + HV N+D+PN  E+Y+HRIGRTGRAG  G+A +LV  ++++
Sbjct: 298 LQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAISLVCVDELQ 357

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            +  IEKLI++ V  + + G         E I              P++  G  +R    
Sbjct: 358 LLKDIEKLIKRPVPQEVIAGFEPDPTAKPEPILRRGQGGGGGGGRSPRQGQGAPKRDGAG 417

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
           S++ +    +        QQ  +   A   G  G
Sbjct: 418 SAKPAQRSGQRPANG---QQQPKPQGAKPAGNGG 448


>gi|38233613|ref|NP_939380.1| DEAD-box helicase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199873|emb|CAE49539.1| DEAD-box helicase [Corynebacterium diphtheriae]
          Length = 680

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 143/378 (37%), Positives = 226/378 (59%), Gaps = 9/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   ++ AV   G+  P+PIQ +TIP+++Q HDV G+AQTGTGKTA+F LP+L+ 
Sbjct: 69  FEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAAFALPILSR 128

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    + R P+ LIL PTRELA QVAD+F+ +  +      L I  G  +  Q   L R
Sbjct: 129 IDV---KKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRR 185

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  +G L ++N+  LV+DEAD ML+MGF   ++ I    P  +Q  
Sbjct: 186 GAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVA 245

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++S +++++P  I+V + + T   I   ++       +        +  
Sbjct: 246 LFSATMPNGIRRLSRDYMKDPHEIQVKSQTRTNTNITQRYLNVAH---RNKLDALTRILE 302

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K     +   L  +GFS  AI+G+I Q  R + +   K+G + ++VA
Sbjct: 303 VTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 362

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HVFN+D+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 363 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 422

Query: 362 KLIEKKVDWLNGDLSSLN 379
           +    K+  +  DL +++
Sbjct: 423 RATNAKL--IEMDLPTVD 438


>gi|94311518|ref|YP_584728.1| DEAD/DEAH box helicase-like protein [Cupriavidus metallidurans
           CH34]
 gi|93355370|gb|ABF09459.1| RNA helicase [Cupriavidus metallidurans CH34]
          Length = 556

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 173/483 (35%), Positives = 249/483 (51%), Gaps = 35/483 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL P+++ A+ + GY KPTPIQ + IP+VL   DV G AQTGTGKTA F LP++ 
Sbjct: 74  TFESFGLDPRILRALTEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQ 133

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        +L PTRELA QV DN  +Y K+ +L   ++ GG+    Q 
Sbjct: 134 RLLPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQT 193

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L RG ++L+ TPGR+LDH  +  + ++ +++LV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 194 DALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPA 253

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL- 235
            RQTLLFSAT + E++K++ ++L+ P  IEV   +ST E +          + +   +  
Sbjct: 254 QRQTLLFSATFSPEIKKLASSYLKQPVTIEVARSNSTNENVRQVVYQVQDGHKQAAVVHL 313

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +   ++   +  I+F N K     L   LE++G +  AIHG+  Q  RM+ L  FK GT
Sbjct: 314 LKQRANEQQSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLDGFKNGT 373

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT-LVAKEDI 354
           I  +VA+D+AARGLDIP +  V NFD+P  AE+Y+HRIGRTGRAG  G A +  V   D 
Sbjct: 374 IDALVATDVAARGLDIPAMPCVINFDLPFSAEDYVHRIGRTGRAGASGDALSIFVPGNDD 433

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ-------------------HNHARK 395
           + +  IEKLI++ +    G L   +P  E+                            R+
Sbjct: 434 RLLADIEKLIKRSIPR--GSLDGFDPTGERARQEDSDRRRARTEVRRVRDNGEGEEQQRR 491

Query: 396 NNPIPQKSTGFDR-------RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
               P     F         R    S   +  P  E +  + L +  Q          G 
Sbjct: 492 RRTEPNGRQAFRPSDDPFFSRPYEPSGSYTPAPKTEEQLAAALTRGRQAPKRPVAALLGG 551

Query: 449 MPA 451
           +P 
Sbjct: 552 VPR 554


>gi|157160272|ref|YP_001457590.1| ATP-dependent RNA helicase RhlE [Escherichia coli HS]
 gi|157065952|gb|ABV05207.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli HS]
          Length = 454

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 158/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  I+V   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIKVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|324114364|gb|EGC08333.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
          Length = 453

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 160/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|118783118|ref|XP_312776.3| AGAP003089-PA [Anopheles gambiae str. PEST]
 gi|116129059|gb|EAA08469.4| AGAP003089-PA [Anopheles gambiae str. PEST]
          Length = 400

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 205/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L 
Sbjct: 28  TFNSMGLREELLRGIYAYGFEKPSAIQQRSIQPIVKGRDVIAQAQSGTGKTATFSISILQ 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++      ++     L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 88  SMDTTLRETQVLC---LSPTRELAVQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDY 144

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 145 GQHVVSGTPGRVFDMIKRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 204

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 205 LISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 262

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG++ Q+ R +I+  F+ G  ++++ 
Sbjct: 263 TLTITQAVIFCNTRRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRSGQSRVLIT 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 323 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIE 382

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 383 QYYSTQIDEMPMNVADL 399


>gi|241737496|ref|XP_002414033.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215507887|gb|EEC17341.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 402

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 128/377 (33%), Positives = 205/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ ++I  V++  DV   AQ+GTGKTA+F + +L 
Sbjct: 30  TFDAIGLREDLLRGIYAYGFEKPSAIQQRSIKPVIKGRDVIAQAQSGTGKTATFSIGVLQ 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++      +    LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 90  TIDTQMRETQA---LILSPTRELAGQIQKVILALGDYMNVQCHSCIGGTNLGEDIRKLDY 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L   +I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 147 GQHIVSGTPGRVFDMIKRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPCTQVV 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 207 LISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G+ ++++ 
Sbjct: 265 TLTITQAVIFCNTKRKVDWLSEKMREANFTVSSMHGDMPQKERDAIMKEFRSGSSRVLIT 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 325 TDIWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRDIE 384

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 385 QYYSTQIDEMPMNVADL 401


>gi|324018526|gb|EGB87745.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 117-3]
          Length = 442

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|324011108|gb|EGB80327.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 60-1]
          Length = 438

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|315299273|gb|EFU58525.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 16-3]
          Length = 446

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|315287179|gb|EFU46591.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 110-3]
          Length = 439

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|331656814|ref|ZP_08357776.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA206]
 gi|331682303|ref|ZP_08382922.1| ATP-dependent RNA helicase RhlE [Escherichia coli H299]
 gi|331055062|gb|EGI27071.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA206]
 gi|331079934|gb|EGI51113.1| ATP-dependent RNA helicase RhlE [Escherichia coli H299]
          Length = 453

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|331651800|ref|ZP_08352819.1| ATP-dependent RNA helicase RhlE [Escherichia coli M718]
 gi|331050078|gb|EGI22136.1| ATP-dependent RNA helicase RhlE [Escherichia coli M718]
          Length = 454

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|301646226|ref|ZP_07246122.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 146-1]
 gi|301075563|gb|EFK90369.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 146-1]
          Length = 446

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|300947123|ref|ZP_07161337.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300453201|gb|EFK16821.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
          Length = 433

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|301020713|ref|ZP_07184781.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 69-1]
 gi|300398524|gb|EFJ82062.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 69-1]
          Length = 452

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|300957744|ref|ZP_07169931.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 175-1]
 gi|300315560|gb|EFJ65344.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 175-1]
          Length = 439

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|301024520|ref|ZP_07188196.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 196-1]
 gi|299880373|gb|EFI88584.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 196-1]
          Length = 438

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|260854088|ref|YP_003227979.1| RNA helicase RhlE [Escherichia coli O26:H11 str. 11368]
 gi|257752737|dbj|BAI24239.1| RNA helicase RhlE [Escherichia coli O26:H11 str. 11368]
 gi|323155682|gb|EFZ41853.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli EPECa14]
          Length = 454

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|170683710|ref|YP_001742900.1| ATP-dependent RNA helicase RhlE [Escherichia coli SMS-3-5]
 gi|170521428|gb|ACB19606.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli SMS-3-5]
          Length = 454

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|117622979|ref|YP_851892.1| ATP-dependent RNA helicase RhlE [Escherichia coli APEC O1]
 gi|115512103|gb|ABJ00178.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli APEC O1]
          Length = 453

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|91209829|ref|YP_539815.1| ATP-dependent RNA helicase RhlE [Escherichia coli UTI89]
 gi|218557702|ref|YP_002390615.1| ATP-dependent RNA helicase RhlE [Escherichia coli S88]
 gi|218688583|ref|YP_002396795.1| ATP-dependent RNA helicase RhlE [Escherichia coli ED1a]
 gi|237707244|ref|ZP_04537725.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 3_2_53FAA]
 gi|91071403|gb|ABE06284.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli UTI89]
 gi|218364471|emb|CAR02153.1| RNA helicase [Escherichia coli S88]
 gi|218426147|emb|CAR06967.1| RNA helicase [Escherichia coli ED1a]
 gi|226898454|gb|EEH84713.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 3_2_53FAA]
 gi|294493052|gb|ADE91808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Escherichia coli
           IHE3034]
 gi|307627793|gb|ADN72097.1| ATP-dependent RNA helicase RhlE [Escherichia coli UM146]
 gi|323958086|gb|EGB53795.1| DEAD/DEAH box helicase [Escherichia coli H263]
          Length = 453

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|82776130|ref|YP_402477.1| ATP-dependent RNA helicase RhlE [Shigella dysenteriae Sd197]
 gi|81240278|gb|ABB60988.1| putative ATP-dependent RNA helicase [Shigella dysenteriae Sd197]
          Length = 454

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|15800548|ref|NP_286560.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 EDL933]
 gi|15830129|ref|NP_308902.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           Sakai]
 gi|168752016|ref|ZP_02777038.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4113]
 gi|168756582|ref|ZP_02781589.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4401]
 gi|168764299|ref|ZP_02789306.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4501]
 gi|168767298|ref|ZP_02792305.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4486]
 gi|168777223|ref|ZP_02802230.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4196]
 gi|168779341|ref|ZP_02804348.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4076]
 gi|168787011|ref|ZP_02812018.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC869]
 gi|168799929|ref|ZP_02824936.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC508]
 gi|195936837|ref|ZP_03082219.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808862|ref|ZP_03251199.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4206]
 gi|208814983|ref|ZP_03256162.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4045]
 gi|208822342|ref|ZP_03262661.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4042]
 gi|209396359|ref|YP_002269466.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4115]
 gi|217324654|ref|ZP_03440738.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. TW14588]
 gi|254791991|ref|YP_003076828.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           TW14359]
 gi|261225444|ref|ZP_05939725.1| RNA helicase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258587|ref|ZP_05951120.1| RNA helicase [Escherichia coli O157:H7 str. FRIK966]
 gi|291281794|ref|YP_003498612.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
           CB9615]
 gi|293414075|ref|ZP_06656724.1| ATP-dependent RNA helicase RhlE [Escherichia coli B185]
 gi|12513789|gb|AAG55168.1|AE005260_7 putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
           EDL933]
 gi|13360334|dbj|BAB34298.1| putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
           Sakai]
 gi|187767485|gb|EDU31329.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4196]
 gi|188014049|gb|EDU52171.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4113]
 gi|189002895|gb|EDU71881.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4076]
 gi|189356291|gb|EDU74710.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4401]
 gi|189363536|gb|EDU81955.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4486]
 gi|189365692|gb|EDU84108.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4501]
 gi|189373064|gb|EDU91480.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC869]
 gi|189377707|gb|EDU96123.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC508]
 gi|208728663|gb|EDZ78264.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4206]
 gi|208731631|gb|EDZ80319.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4045]
 gi|208737827|gb|EDZ85510.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4042]
 gi|209157759|gb|ACI35192.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4115]
 gi|209775908|gb|ACI86266.1| putative ATP-dependent RNA helicase [Escherichia coli]
 gi|209775910|gb|ACI86267.1| putative ATP-dependent RNA helicase [Escherichia coli]
 gi|209775912|gb|ACI86268.1| putative ATP-dependent RNA helicase [Escherichia coli]
 gi|209775914|gb|ACI86269.1| putative ATP-dependent RNA helicase [Escherichia coli]
 gi|209775916|gb|ACI86270.1| putative ATP-dependent RNA helicase [Escherichia coli]
 gi|217320875|gb|EEC29299.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. TW14588]
 gi|254591391|gb|ACT70752.1| RNA helicase [Escherichia coli O157:H7 str. TW14359]
 gi|290761667|gb|ADD55628.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
           CB9615]
 gi|291434133|gb|EFF07106.1| ATP-dependent RNA helicase RhlE [Escherichia coli B185]
 gi|320192728|gb|EFW67369.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           EC1212]
 gi|320637659|gb|EFX07451.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           G5101]
 gi|320642785|gb|EFX11986.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str.
           493-89]
 gi|320648241|gb|EFX16896.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str. H
           2687]
 gi|320654078|gb|EFX22146.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320659701|gb|EFX27257.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320664171|gb|EFX31322.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326338317|gb|EGD62146.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           1125]
 gi|326346295|gb|EGD70033.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           1044]
          Length = 455

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|157155652|ref|YP_001461987.1| ATP-dependent RNA helicase RhlE [Escherichia coli E24377A]
 gi|193064450|ref|ZP_03045531.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E22]
 gi|194428200|ref|ZP_03060743.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B171]
 gi|256021133|ref|ZP_05434998.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9]
 gi|260843040|ref|YP_003220818.1| RNA helicase RhlE [Escherichia coli O103:H2 str. 12009]
 gi|293433058|ref|ZP_06661486.1| ATP-dependent RNA helicase RhlE [Escherichia coli B088]
 gi|300824257|ref|ZP_07104374.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 119-7]
 gi|331676532|ref|ZP_08377228.1| ATP-dependent RNA helicase RhlE [Escherichia coli H591]
 gi|332282359|ref|ZP_08394772.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9]
 gi|157077682|gb|ABV17390.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Escherichia coli
           E24377A]
 gi|192928912|gb|EDV82525.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E22]
 gi|194413760|gb|EDX30039.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B171]
 gi|257758187|dbj|BAI29684.1| RNA helicase RhlE [Escherichia coli O103:H2 str. 12009]
 gi|291323877|gb|EFE63299.1| ATP-dependent RNA helicase RhlE [Escherichia coli B088]
 gi|300523231|gb|EFK44300.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 119-7]
 gi|320198986|gb|EFW73583.1| ATP-dependent RNA helicase RhlE [Escherichia coli EC4100B]
 gi|323159727|gb|EFZ45705.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli E128010]
 gi|323185047|gb|EFZ70413.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1357]
 gi|323947045|gb|EGB43058.1| DEAD/DEAH box helicase [Escherichia coli H120]
 gi|331075221|gb|EGI46519.1| ATP-dependent RNA helicase RhlE [Escherichia coli H591]
 gi|332104711|gb|EGJ08057.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9]
          Length = 454

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|16128765|ref|NP_415318.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89107648|ref|AP_001428.1| RNA helicase [Escherichia coli str. K-12 substr. W3110]
 gi|170020847|ref|YP_001725801.1| ATP-dependent RNA helicase RhlE [Escherichia coli ATCC 8739]
 gi|170080456|ref|YP_001729776.1| RNA helicase [Escherichia coli str. K-12 substr. DH10B]
 gi|188494973|ref|ZP_03002243.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 53638]
 gi|191166178|ref|ZP_03028012.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B7A]
 gi|194433132|ref|ZP_03065414.1| putative ATP-dependent RNA helicase RhlE [Shigella dysenteriae
           1012]
 gi|194438467|ref|ZP_03070557.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 101-1]
 gi|209918043|ref|YP_002292127.1| ATP-dependent RNA helicase RhlE [Escherichia coli SE11]
 gi|218553381|ref|YP_002386294.1| ATP-dependent RNA helicase RhlE [Escherichia coli IAI1]
 gi|218694271|ref|YP_002401938.1| ATP-dependent RNA helicase RhlE [Escherichia coli 55989]
 gi|238900056|ref|YP_002925852.1| RNA helicase [Escherichia coli BW2952]
 gi|253774200|ref|YP_003037031.1| ATP-dependent RNA helicase RhlE [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160874|ref|YP_003043982.1| ATP-dependent RNA helicase RhlE [Escherichia coli B str. REL606]
 gi|256023607|ref|ZP_05437472.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 4_1_40B]
 gi|297521312|ref|ZP_06939698.1| ATP-dependent RNA helicase RhlE [Escherichia coli OP50]
 gi|300816442|ref|ZP_07096664.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 107-1]
 gi|300907124|ref|ZP_07124790.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 84-1]
 gi|300920043|ref|ZP_07136502.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 115-1]
 gi|300922820|ref|ZP_07138906.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 182-1]
 gi|300929402|ref|ZP_07144871.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 187-1]
 gi|301303551|ref|ZP_07209673.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 124-1]
 gi|301327988|ref|ZP_07221153.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 78-1]
 gi|307137421|ref|ZP_07496777.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736]
 gi|307313793|ref|ZP_07593410.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|309794255|ref|ZP_07688679.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 145-7]
 gi|312970872|ref|ZP_07785051.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1827-70]
 gi|331641310|ref|ZP_08342445.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736]
 gi|548730|sp|P25888|RHLE_ECOLI RecName: Full=ATP-dependent RNA helicase rhlE
 gi|560801|gb|AAA53653.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           W3110]
 gi|1787016|gb|AAC73884.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|4062355|dbj|BAA35457.1| RNA helicase [Escherichia coli str. K12 substr. W3110]
 gi|169755775|gb|ACA78474.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
 gi|169888291|gb|ACB01998.1| RNA helicase [Escherichia coli str. K-12 substr. DH10B]
 gi|188490172|gb|EDU65275.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 53638]
 gi|190903787|gb|EDV63502.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B7A]
 gi|194418629|gb|EDX34716.1| putative ATP-dependent RNA helicase RhlE [Shigella dysenteriae
           1012]
 gi|194422691|gb|EDX38688.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 101-1]
 gi|209911302|dbj|BAG76376.1| putative ATP-dependent RNA helicase [Escherichia coli SE11]
 gi|218351003|emb|CAU96707.1| RNA helicase [Escherichia coli 55989]
 gi|218360149|emb|CAQ97698.1| RNA helicase [Escherichia coli IAI1]
 gi|238863492|gb|ACR65490.1| RNA helicase [Escherichia coli BW2952]
 gi|242376589|emb|CAQ31298.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
 gi|253325244|gb|ACT29846.1| DEAD/DEAH box helicase domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972775|gb|ACT38446.1| RNA helicase [Escherichia coli B str. REL606]
 gi|253976995|gb|ACT42665.1| RNA helicase [Escherichia coli BL21(DE3)]
 gi|260450056|gb|ACX40478.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
 gi|300401169|gb|EFJ84707.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 84-1]
 gi|300412990|gb|EFJ96300.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 115-1]
 gi|300420852|gb|EFK04163.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 182-1]
 gi|300462602|gb|EFK26095.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 187-1]
 gi|300531132|gb|EFK52194.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 107-1]
 gi|300841050|gb|EFK68810.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 124-1]
 gi|300845553|gb|EFK73313.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 78-1]
 gi|306906433|gb|EFN36947.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|308122160|gb|EFO59422.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 145-7]
 gi|309701075|emb|CBJ00373.1| putative ATP-dependent RNA helicase [Escherichia coli ETEC H10407]
 gi|310336633|gb|EFQ01800.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1827-70]
 gi|315060033|gb|ADT74360.1| RNA helicase [Escherichia coli W]
 gi|315135447|dbj|BAJ42606.1| ATP-dependent RNA helicase RhlE [Escherichia coli DH1]
 gi|315257782|gb|EFU37750.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 85-1]
 gi|320178508|gb|EFW53473.1| ATP-dependent RNA helicase RhlE [Shigella boydii ATCC 9905]
 gi|323172087|gb|EFZ57726.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli LT-68]
 gi|323379408|gb|ADX51676.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11]
 gi|323942670|gb|EGB38835.1| DEAD/DEAH box helicase [Escherichia coli E482]
 gi|323963044|gb|EGB58615.1| DEAD/DEAH box helicase [Escherichia coli H489]
 gi|323971962|gb|EGB67183.1| DEAD/DEAH box helicase [Escherichia coli TA007]
 gi|331038108|gb|EGI10328.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736]
 gi|332091029|gb|EGI96119.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
           155-74]
 gi|332342129|gb|AEE55463.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMNK88]
          Length = 454

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|26246770|ref|NP_752810.1| ATP-dependent RNA helicase RhlE [Escherichia coli CFT073]
 gi|110641001|ref|YP_668729.1| ATP-dependent RNA helicase RhlE [Escherichia coli 536]
 gi|191174652|ref|ZP_03036132.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli F11]
 gi|227884241|ref|ZP_04002046.1| ATP-dependent RNA helicase RhlE [Escherichia coli 83972]
 gi|300939831|ref|ZP_07154469.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 21-1]
 gi|300992077|ref|ZP_07179779.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 200-1]
 gi|300993271|ref|ZP_07180318.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 45-1]
 gi|301051284|ref|ZP_07198110.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 185-1]
 gi|306812801|ref|ZP_07446994.1| ATP-dependent RNA helicase RhlE [Escherichia coli NC101]
 gi|331646014|ref|ZP_08347117.1| ATP-dependent RNA helicase RhlE [Escherichia coli M605]
 gi|26107169|gb|AAN79353.1|AE016757_257 Putative ATP-dependent RNA helicase rhlE [Escherichia coli CFT073]
 gi|110342593|gb|ABG68830.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 536]
 gi|190905071|gb|EDV64730.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli F11]
 gi|222032528|emb|CAP75267.1| ATP-dependent RNA helicase rhlE [Escherichia coli LF82]
 gi|227838993|gb|EEJ49459.1| ATP-dependent RNA helicase RhlE [Escherichia coli 83972]
 gi|300297043|gb|EFJ53428.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 185-1]
 gi|300305406|gb|EFJ59926.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 200-1]
 gi|300406679|gb|EFJ90217.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 45-1]
 gi|300455363|gb|EFK18856.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 21-1]
 gi|305853564|gb|EFM54003.1| ATP-dependent RNA helicase RhlE [Escherichia coli NC101]
 gi|307552642|gb|ADN45417.1| ATP-dependent RNA helicase [Escherichia coli ABU 83972]
 gi|312945315|gb|ADR26142.1| ATP-dependent RNA helicase RhlE [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315292604|gb|EFU51956.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 153-1]
 gi|320196708|gb|EFW71331.1| ATP-dependent RNA helicase RhlE [Escherichia coli WV_060327]
 gi|324009618|gb|EGB78837.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 57-2]
 gi|330910540|gb|EGH39050.1| ATP-dependent RNA helicase RhlE [Escherichia coli AA86]
 gi|331044766|gb|EGI16893.1| ATP-dependent RNA helicase RhlE [Escherichia coli M605]
          Length = 453

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|261492525|ref|ZP_05989078.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496800|ref|ZP_05993174.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261307547|gb|EEY08876.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311684|gb|EEY12834.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 601

 Score =  177 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 138/372 (37%), Positives = 227/372 (61%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   ++ AV + G+V P+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 6   LTFADLGLPQPILDAVNEMGFVNPSPIQQECIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++  +   R P+ L++ PTRELA QVAD  E++ KN   + V  + GG  ++ Q + L
Sbjct: 66  AQIDPTQ---RHPQMLVMAPTRELAIQVADACEQFAKNMKGIRVVTVYGGQRYDIQLRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G+ V++ TPGRILDH  RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P T Q
Sbjct: 123 KQGSQVVVGTPGRILDHIRRGTLDLSELKFIVLDEADEMLRMGFIDDVETVMAELPETHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+++P+ +++     +A  IE  +                  
Sbjct: 183 TALFSATMPEPIRRITRRFMKDPQEVKIKATERSAPDIEQSYWLVNGFRKNDA---LLRF 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++    E+ G+   A++G++ Q++R + L   + G + ++
Sbjct: 240 LEVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLRSGRLDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P   E+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 300 VATDVAARGIDIERISLVINYDIPLEEESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359

Query: 360 IEKLIEKKVDWL 371
           IE LI+K ++ +
Sbjct: 360 IENLIKKPINEV 371


>gi|254361250|ref|ZP_04977393.1| superfamily II helicase [Mannheimia haemolytica PHL213]
 gi|110735365|gb|ABG89253.1| ATP-dependent RNA helicase [Mannheimia haemolytica]
 gi|153092746|gb|EDN73789.1| superfamily II helicase [Mannheimia haemolytica PHL213]
          Length = 602

 Score =  177 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 138/372 (37%), Positives = 227/372 (61%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   ++ AV + G+V P+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 6   LTFADLGLPQPILDAVNEMGFVNPSPIQQECIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++  +   R P+ L++ PTRELA QVAD  E++ KN   + V  + GG  ++ Q + L
Sbjct: 66  AQIDPTQ---RHPQMLVMAPTRELAIQVADACEQFAKNMKGIRVVTVYGGQRYDIQLRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G+ V++ TPGRILDH  RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P T Q
Sbjct: 123 KQGSQVVVGTPGRILDHIRRGTLDLSELKFIVLDEADEMLRMGFIDDVETVMAELPETHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+++P+ +++     +A  IE  +                  
Sbjct: 183 TALFSATMPEPIRRITRRFMKDPQEVKIKATERSAPDIEQSYWLVNGFRKNDA---LLRF 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++    E+ G+   A++G++ Q++R + L   + G + ++
Sbjct: 240 LEVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLRSGRLDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P   E+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 300 VATDVAARGIDIERISLVINYDIPLEEESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359

Query: 360 IEKLIEKKVDWL 371
           IE LI+K ++ +
Sbjct: 360 IENLIKKPINEV 371


>gi|224024964|ref|ZP_03643330.1| hypothetical protein BACCOPRO_01695 [Bacteroides coprophilus DSM
           18228]
 gi|224018200|gb|EEF76198.1| hypothetical protein BACCOPRO_01695 [Bacteroides coprophilus DSM
           18228]
          Length = 423

 Score =  177 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 137/426 (32%), Positives = 227/426 (53%), Gaps = 7/426 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L   V+ A+    + + TP+Q  TIP++L+  D+ G+AQTGTGKTA+++LP+L
Sbjct: 1   MQFSELNLEDSVLDALDAMNFRECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L KG         +I+ PTRELA Q+    E +      +   + GG       ++ +
Sbjct: 61  NQLSKGNYPEDAINCIIMAPTRELAMQIDQQMEGFSYFMPASSVAVYGGNDGIRFEQEKK 120

Query: 121 RGA---DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 DV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFAEDIMQIVKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q++++  L NP  +++       +       A Y  Y  +   + +
Sbjct: 181 RQTIMFSATMPTKIQQLAKTILTNPVEVKLAVSKPAEKI----IQAAYICYEAQKLGIIE 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +   +  IIF + K  V  +  +L++   +V  +H ++DQ  R  I+  F+ G I 
Sbjct: 237 SLFKEQQPERVIIFASSKIKVKEVTKALKRLKLNVGEMHSDLDQSQREAIMHEFRNGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V++ +    
Sbjct: 297 MLVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGCAITFVSETEQNKF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE  +EK++  +         P      A+     ++    ++S   +RR+K  S+  
Sbjct: 357 KQIENFLEKEIYKIPVPEELGEAPAYNPRSAKPKGNSQSASGKKRSCNGNRRRKKKSAPA 416

Query: 418 SHIPLK 423
           S  P K
Sbjct: 417 SPSPAK 422


>gi|168212498|ref|ZP_02638123.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens CPE str.
           F4969]
 gi|170715966|gb|EDT28148.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens CPE str.
           F4969]
          Length = 478

 Score =  177 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 133/420 (31%), Positives = 229/420 (54%), Gaps = 6/420 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ A+ + GY  P+ +Q  +IP +L+  D+   +QTG+GKTASF +P+ 
Sbjct: 1   MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPLC 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +V+    L+L PTRELA QV D     G+   +  A + G  PF  Q ++L+
Sbjct: 61  EKINIEEKKVQC---LVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIRELK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+ DH  RG L ++ +  +VIDEAD+ML MGFI  I++I   +   + T
Sbjct: 118 QRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT + E++++ E +++NP  +EV +     + IE    +      K          
Sbjct: 178 ALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEE---SAIEIEEKNKGKALWKCL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ I+FCN +  V ++   L+ +G +   +HG+++Q+ R++++ NF++   +++V
Sbjct: 235 YAYHPESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ +  +  V N++VP   E+Y+HRIGRTGRAGR GKA T V   + K+++ +
Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+ I  ++   +           KI         K +  P+K    D  K + +  K   
Sbjct: 355 EEYIGYEIRKASLPSDEEVKAGRKIFKESQKVQLKESKKPKKEVHVDIVKIHVNGGKKKK 414


>gi|157963311|ref|YP_001503345.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157848311|gb|ABV88810.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 511

 Score =  177 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 179/463 (38%), Positives = 261/463 (56%), Gaps = 15/463 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS +++ AV + GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG     +  R L+L PTRELAAQV ++ E YGKN  L  A++ GG+    Q  KL
Sbjct: 61  ELLSKGTKAPAKQVRALVLTPTRELAAQVGESVETYGKNLPLKSAVVFGGVGIGPQITKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD +N+  L  + +E+LV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 NRGVDILVATPGRLLDLYNQRALSFSQLEVLVLDEADRMLDMGFIHDIKKILAILPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +D+++++++  + NP  I V   ++TA T++               +     
Sbjct: 181 NLMFSATFSDDIRQLAKGLVNNPVEISVTPRNATANTVQQWVCPVDQSQKTAVLVKL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  +  ++F   K     L  +LE +  +  AIHGN  Q +R K L++FK G ++++
Sbjct: 238 IKQNDWQQVLVFSRTKHGANRLAKNLEAKDITAAAIHGNKSQGARTKALADFKSGAVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G A +LV+ E+ K +  
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGHAVSLVSNEETKLLRD 357

Query: 360 IEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR-RKKNYSSQ 416
           IE LI++ ++   + G   + N P   +    H   R       +S G  R R  N    
Sbjct: 358 IELLIKQNLERRVVEGLEPTHNLPETDLTGKSHGQNRGPRNSGNQSRGNGRSRSPNSGGA 417

Query: 417 KSHIPLKESEKISKLQQDIQE------NDADSLG--FRGNMPA 451
            +  P +         Q+  +       D    G   RG+ P+
Sbjct: 418 GNKPPQRRQSNGQNNAQNSNDGAKTEHRDGQRSGEMARGHQPS 460


>gi|268563240|ref|XP_002638790.1| Hypothetical protein CBG05145 [Caenorhabditis briggsae]
 gi|187035232|emb|CAP25672.1| hypothetical protein CBG_05145 [Caenorhabditis briggsae AF16]
          Length = 400

 Score =  177 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 213/377 (56%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + IP +L+  DV   AQ+GTGKTA+F + +L 
Sbjct: 28  TFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQ 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 88  SLDT---QVRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDY 144

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   + +I   +P   Q +
Sbjct: 145 GQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVV 204

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L+      
Sbjct: 205 LLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDKEEWKFDTLIDL--YD 262

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   ++FCN ++ V  L   +++  F+V ++HG+++Q+ R +++  F+ G  +++++
Sbjct: 263 TLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGNTRVLIS 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  V N+D+PN  E YIHRIGR+GR GR G A   V ++D++ +  IE
Sbjct: 323 TDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDIE 382

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ +
Sbjct: 383 QYYSTQIDEMPMNIADI 399


>gi|300853611|ref|YP_003778595.1| putative ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300433726|gb|ADK13493.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 496

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 137/429 (31%), Positives = 228/429 (53%), Gaps = 13/429 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  LS  ++ ++   GY  P+ +Q K IPL+ +  D+   +QTG+GKTA+F +P+ 
Sbjct: 19  LEFKDFALSEDILKSIEKLGYKNPSQVQEKVIPLIFKNKDIIVKSQTGSGKTAAFAIPIC 78

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +E      + P+ L+L PTRELA Q+ ++F   G+   +    + G  P   Q K+L+
Sbjct: 79  EKIEL---EEKNPQVLVLAPTRELALQIKEDFYDIGRFKRINCTAIFGKEPITTQIKELK 135

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V++ TPGR LDH  +  L +  I+ L+IDEAD ML+MGFI  ++ +   +P  R T
Sbjct: 136 QRTHVIVGTPGRTLDHIEKDTLSLKKIQYLIIDEADEMLNMGFIDQVKAVLDKLPKNRVT 195

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  E+ K+   ++ NP  +E++        I   +    A        L   L 
Sbjct: 196 LLFSATIPQEILKLCAAYMNNPINVEIDAEDPVINRINQIYYQIEAYKK---FDLLNKLV 252

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ +IFC  KKNV +L   ++ +G+S   +HG + Q  R+ ++  FK G    +V
Sbjct: 253 YTQRPESSMIFCRTKKNVEDLVLQMKGKGYSCSGLHGGMLQSERIDVMKRFKRGEFIFLV 312

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+D+ ++ H+ N+D+P   E+Y+HRIGRTGRAG+ G A T V  ++ + ++ I
Sbjct: 313 CTDVAARGIDVENITHIINYDIPMEKESYVHRIGRTGRAGKSGTAITFVTPKEYRFLEEI 372

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EK     ++          P  E+++  +  +  K    P+        K N    K +I
Sbjct: 373 EKFFNLTIE------KGTIPSKEEVEKGKDIYKEKLKAAPKIKKDKST-KLNKDITKIYI 425

Query: 421 PLKESEKIS 429
              + +KI 
Sbjct: 426 SAGKKKKIR 434


>gi|257440057|ref|ZP_05615812.1| putative ATP-dependent RNA helicase RhlE [Faecalibacterium
           prausnitzii A2-165]
 gi|257197409|gb|EEU95693.1| putative ATP-dependent RNA helicase RhlE [Faecalibacterium
           prausnitzii A2-165]
          Length = 641

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 164/446 (36%), Positives = 247/446 (55%), Gaps = 3/446 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  V+ AV  AGY  P+PIQ   IP VL   D+ G AQTGTGKTA+F LPML
Sbjct: 1   MTFNELNLSAPVLRAVAQAGYESPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPML 60

Query: 61  TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L     R +   R LIL PTRELA Q+ ++FE YGK   L   ++ GG+    Q   L
Sbjct: 61  DRLTASAPRKKGAIRALILTPTRELALQIGESFEAYGKYLTLRSTVIFGGVGQAPQVAAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G D+LI  PGR+ D   +G L ++NIEI V+DEADRMLDMGF+  ++ + + +P  RQ
Sbjct: 121 KKGVDILIACPGRLNDLVGQGLLDLSNIEIFVLDEADRMLDMGFVHDVKKVIAKLPRQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  E+++++   L +P  ++V+  SST + I+           K       + 
Sbjct: 181 NLMFSATMPKEIEQLAAGILHDPAFVKVDPVSSTVDRIQQSLYFVEKGNKKFLLPWL-IK 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +  + N ++F   K     +   L KQG    AIHGN  Q +R+  L +FK G  +++
Sbjct: 240 NLKPEVVNALVFSRTKHGADKIAKDLNKQGIPAAAIHGNKSQTARVTALEDFKAGKTRVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI ++ HVFN+D+P   E Y+HRIGRT RAG  G A +  A E+ +++  
Sbjct: 300 VATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEKEYLAG 359

Query: 360 IEKLIEKKVDWLNG-DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           IEKL  +++  ++G     +  P++     +    +     P+K    ++  K   + K+
Sbjct: 360 IEKLNRRQIPVVSGHPWDGVPAPVKAAPPVRGKKPKAEAEQPEKPVKAEKPAKAEKAAKA 419

Query: 419 HIPLKESEKISKLQQDIQENDADSLG 444
             P    ++ +  +Q   +N     G
Sbjct: 420 EKPAVPKKEKAAAKQPSPKNTEPKEG 445


>gi|168185435|ref|ZP_02620070.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
           Eklund]
 gi|169296498|gb|EDS78631.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
           Eklund]
          Length = 476

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 144/429 (33%), Positives = 240/429 (55%), Gaps = 13/429 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F D  LS +++  +   GY  PT +Q KTIP+VLQ  D+   +QTG+GKTASF +P+ 
Sbjct: 1   MNFNDFKLSSEILKTIKMLGYKNPTEVQEKTIPIVLQGKDIIVKSQTGSGKTASFGIPLC 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++    +   P+ LIL PTRELA Q+ ++    G+   +    + G  P   Q  +L+
Sbjct: 61  EKVKLENKK---PQALILTPTRELAVQIKEDISNIGRFKKVKCVAVYGKEPVSIQKNQLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR  DH  +G L +++++ L+IDEAD+ML+MGFI  +++I   +   R T
Sbjct: 118 QRVHIVVGTPGRTFDHIQKGNLDLSDVKYLIIDEADKMLNMGFIDQVEDIIKRLSTDRIT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ + ++K+ + ++ NP++IE+   + T + IE  +         K       + 
Sbjct: 178 MLFSATLEERIEKLCKRYMNNPEKIEIKRENVTTDVIEQEYYKVDHS---KRFNTLTKVI 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +   + IIFCN K  V N+ + ++ +GF+  A+HG +DQ+ R+  +++FK G  Q +V
Sbjct: 235 YAEVPDSAIIFCNTKVEVGNVANKMKNEGFNAKALHGGMDQKDRLYTINDFKRGKFQFLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HV N++VP   E Y+HRIGRTGRAG  GK+ T V+  + +  + I
Sbjct: 295 ATDVAARGIDVEEITHVINYEVPVEKEGYVHRIGRTGRAGHKGKSITFVSDYEKRMFNEI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+ I   V           P  E+I+  +     K    P K       + +    K HI
Sbjct: 355 EEYIGYSVPEKEI------PQEEEIEKGKKLFEEKARQRP-KFKKVKGHEIDKKITKIHI 407

Query: 421 PLKESEKIS 429
              + +K+ 
Sbjct: 408 NAGKKKKVR 416


>gi|71906757|ref|YP_284344.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Dechloromonas aromatica RCB]
 gi|71846378|gb|AAZ45874.1| ATP-dependent RNA helicase CsdA [Dechloromonas aromatica RCB]
          Length = 606

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 143/371 (38%), Positives = 227/371 (61%), Gaps = 6/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS  ++  +   GY  P+PIQ + IP++L+ HD+ G+AQTGTGKTA+F LP++ 
Sbjct: 7   SFADLGLSETLLQTLTQIGYETPSPIQAQCIPVLLEGHDLIGMAQTGTGKTAAFALPLME 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++    ++  P+ LIL PTRELA QVA+  + Y KN      L I  G  +  Q K+L 
Sbjct: 67  QIDV---KLTKPQALILTPTRELAIQVAEALQTYAKNLPGFHVLPIYGGQSYTIQLKQLS 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  R  L +++++ +V+DEAD ML MGFI  ++ I    P   QT
Sbjct: 124 RGAHVIVGTPGRVMDHLERKTLNLDHLKTMVLDEADEMLRMGFIDDVEWILERTPAQHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +++++V++ +L  P+ I++ + ++T   I   +      +      L ++L+
Sbjct: 184 ALFSATMPEQIRRVAQKYLVEPREIKIKSATATVAAIRQVYWQVSGMHK--LDALTRILE 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     IIF   K   V L   L  +G++  A++G+++Q+ R +++   K G + +++
Sbjct: 242 VEEDFDAAIIFVRTKTATVELADKLSARGYAAAALNGDLNQQMRERVIEQLKSGALDIVI 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+P V HV N+D+P   E Y+HRIGRTGRAGR G A   VA  +I+ +  I
Sbjct: 302 ATDVAARGIDVPRVSHVVNYDIPYDTEAYVHRIGRTGRAGRTGNAILFVAPREIRMLRTI 361

Query: 361 EKLIEKKVDWL 371
           E+     +  L
Sbjct: 362 ERATRSPIAPL 372


>gi|290968757|ref|ZP_06560294.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781053|gb|EFD93644.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 520

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 160/463 (34%), Positives = 252/463 (54%), Gaps = 15/463 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L +S  ++ A+   G+ +PTPIQ ++IP+ LQ  D+ G AQTGTGKTA+F +P+L 
Sbjct: 4   KFQNLKISEVILQALNAMGFEEPTPIQAESIPVALQGADMIGQAQTGTGKTAAFGIPVLE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + K     +  +T++L PTRELA QVA+      +   +    + GG   E Q ++L +
Sbjct: 64  KILKNEP-TQSIQTVVLSPTRELAMQVAEELNHLAQCTTIQALPIYGGQDMERQLRRLRK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++DH  RG + +++I  +V+DEAD MLDMGFI  I  I S  P TRQTL
Sbjct: 123 HPQIIVATPGRLMDHMKRGTIDLSDIHTIVLDEADEMLDMGFIDDINTIMSATPDTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +Q+++E FL  P+ I +     T + IE    +      ++   +   L  
Sbjct: 183 LFSATMPKPIQQLAETFLHEPQIIRMKAKEVTMDLIEQ---SYIETPDRQKFDVLCRLLD 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIF   K+ V  +  +L+K+G+S   IHG++ Q  R  ++  F+E TI ++VA
Sbjct: 240 LQEPDLAIIFVRTKRRVDEVAEALKKRGYSSEGIHGDLTQAKRDSVIRQFREKTIDILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HVFN+D+P   E+Y+HR+GRTGRAG+ G+A T V   +++H+ AIE
Sbjct: 300 TDVAARGLDISGVTHVFNYDLPQDPESYVHRVGRTGRAGKSGEATTFVIPREMEHLRAIE 359

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK--NNPIPQKSTGFDRRKKNYSSQKSH 419
           +LI++ +              + ++ AQ    R+  N    ++S  +    +   S    
Sbjct: 360 RLIKRHITRRKA-----PTLAQALEGAQQAAIRRLINTAEDERSGQYRGNAEELLSHYDS 414

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
           I L  +     ++   +E D   +      P  +   NR    
Sbjct: 415 ITLLSAA----IKLLTKEPDMTPVKITEEAPLRIRRANRRTDR 453


>gi|268680741|ref|YP_003305172.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618772|gb|ACZ13137.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 583

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 136/369 (36%), Positives = 217/369 (58%), Gaps = 5/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL   ++ A+ +AG+ +P+P+Q + IPLVLQ HD+   AQTGTGKTA+F LP ++
Sbjct: 3   TFESFGLHQDILKAINEAGFTEPSPVQAEAIPLVLQGHDIVAQAQTGTGKTAAFGLPTMS 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++  + RV+    L++ PTRELA QV+D     G+   +    + GG  +  Q   +E+
Sbjct: 63  MIDANQNRVQ---LLVITPTRELATQVSDELYSLGRFCGIKTVTIYGGSSYSRQIGLIEK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR+LD    G+L     +++V+DEAD MLDMGF+  I+ I + +P  RQTL
Sbjct: 120 GASVIVATPGRMLDLLKNGRLPGFAPKMVVLDEADEMLDMGFLEDIEEIFTYLPKERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++   L  PK + +     T             +Y +  A+++     
Sbjct: 180 LFSATMPEPIKRLASKILHEPKFVSITPKDHTTNEDIEQLYYVINEYERDDAMIRL--LD 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+FC  KK V  L   L   G++   +HG+++Q  R  ++  F+   I+++VA
Sbjct: 238 ALEPEKSIVFCRTKKEVDRLSTQLMAVGYAAKGLHGDMEQNQRESVIKAFRSSQIEILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGL++ D+ HVFN+ +P   E+Y+HRIGRTGRAG+ G A TLV   +   +  I 
Sbjct: 298 TDVAARGLNVADISHVFNYHMPFDPESYVHRIGRTGRAGKKGTAITLVTPIEFHSMQRIG 357

Query: 362 KLIEKKVDW 370
           K +  K++ 
Sbjct: 358 KKVGSKIEH 366


>gi|219669142|ref|YP_002459577.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
 gi|219539402|gb|ACL21141.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 530

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 149/384 (38%), Positives = 234/384 (60%), Gaps = 9/384 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ LS +V+ A+ + G+ +P+PIQ   IP+ +   D+ G AQTGTGKTA+F +P+  
Sbjct: 8   SFGEISLSKQVLQALSEMGFEEPSPIQKAAIPVAMDGVDLIGQAQTGTGKTAAFGIPICE 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +      V+    LIL PTRELA QV++   K GK  ++    + GG   + Q + L  
Sbjct: 68  KVNPKFQAVQA---LILTPTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIRALRF 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G+ V++ TPGRILDH NRG L +  ++++V+DEAD MLDMGF+  I+ I   VP   + +
Sbjct: 125 GSQVVVGTPGRILDHLNRGTLKLQYVKMVVLDEADEMLDMGFVEDIETILKQVPKEERQV 184

Query: 182 L-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + FSATM  E++K+++N++  PK + V+    T   IE      Y    K        + 
Sbjct: 185 MLFSATMPPEIKKLAQNYMHQPKSVAVSRDELTVPLIEQ---VFYEARDKIKVDALCRII 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +   IIFC  K+ V  L  +LE +G+   A+HG++ Q+ R +++  F++G ++L+V
Sbjct: 242 DMEDIGQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELLV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI +V HV NFD+P   E+Y+HRIGRTGRAGR G+A TLV+  + + +  I
Sbjct: 302 ATDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVSSREYRQLRLI 361

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E+LI+ ++  +  +L +L    E+
Sbjct: 362 ERLIKTRI--IRKELPTLADVSER 383


>gi|315648503|ref|ZP_07901602.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315276197|gb|EFU39543.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 536

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 151/402 (37%), Positives = 238/402 (59%), Gaps = 11/402 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FAD GL P+V+ A+ + G+ + TPIQ ++IP+ L   D+ G AQTGTGKTA+F LP++ 
Sbjct: 3   NFADFGLEPRVLQAITELGFEEATPIQSQSIPIALTGRDMIGQAQTGTGKTAAFGLPLIH 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + K   R+    +LI+ PTRELA QVA+   K  +   +    + GG     Q + L++
Sbjct: 63  KIAKEEERIV---SLIMTPTRELAIQVAEEIGKLSRFKGIRSLAIYGGQDIGRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH NR  + +++++ +V+DEAD MLDMGF+  IQ+I  LVP  RQTL
Sbjct: 120 KPQIIIGTPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDIQSILKLVPEERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +QK++  FL++P+ + V     +A  I     A      ++       L  
Sbjct: 180 LFSATMPANIQKLASQFLKDPEHVSVIPKHVSAPLI---DQAYIEVPERQKFEALSRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            ++ +  I+F   K+ V  L  +L+K+G+S   +HG++ Q  R  ++  F++G+I ++VA
Sbjct: 237 MESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HV NFD+P   E+Y+HRIGRTGRAG+ G A++ V   ++ H+  IE
Sbjct: 297 TDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLYFIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           ++   ++         L    E I+  Q   A +   I ++ 
Sbjct: 357 RVTRHRIPRKP-----LPTIAEAIEGKQRIIAERVLEIIEQG 393


>gi|251793160|ref|YP_003007888.1| cold-shock deAd box protein a [Aggregatibacter aphrophilus NJ8700]
 gi|247534555|gb|ACS97801.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Aggregatibacter aphrophilus NJ8700]
          Length = 600

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 137/373 (36%), Positives = 221/373 (59%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGL   ++ AV D G+  P+PIQ   IP +L+  DV G+AQTG+GKTA+F LP+L
Sbjct: 6   MTFADLGLPEFILNAVSDLGFETPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFSLPIL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E + K       + +  G  ++ Q + L
Sbjct: 66  AKIDPAE---KHPQLLVMAPTRELAIQVADACEHFVKYAKGINVVTLYGGQRYDIQLRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  RG L +  ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 KQGAQVVVGTPGRILDHLRRGTLSLAELKAIVLDEADEMLRMGFIDDVETVMAELPEHHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+++P+ +++     +A  I       +              
Sbjct: 183 TALFSATMPEPIRRITKRFMKDPQEVKIKATQQSAPDIAQSCWYVHGLRKNDA---LLRF 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 240 LEVEDFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSLDIV 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 300 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359

Query: 360 IEKLIEKKVDWLN 372
           +E LI+K ++ + 
Sbjct: 360 VEHLIKKNIEEVK 372


>gi|115453811|ref|NP_001050506.1| Os03g0566800 [Oryza sativa Japonica Group]
 gi|122246919|sp|Q10I26|RH34_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 34
 gi|13957631|gb|AAK50586.1|AC084404_11 putative translation initiation factor [Oryza sativa Japonica
           Group]
 gi|108709369|gb|ABF97164.1| Eukaryotic initiation factor 4A-3, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113548977|dbj|BAF12420.1| Os03g0566800 [Oryza sativa Japonica Group]
          Length = 404

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 132/377 (35%), Positives = 199/377 (52%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G+   ++  +   G+ KP+ IQ + +  ++   DV   AQ+GTGKT+   L +  
Sbjct: 32  SFDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQ 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I++     V+    LIL PTRELAAQ        G   N+ V   IGG       +KLE 
Sbjct: 92  IVDTAVREVQA---LILSPTRELAAQTERVMLAIGDYINIQVHACIGGKSIGEDIRKLEH 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++L++DEAD ML  GF   I ++   +P   Q  
Sbjct: 149 GVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQVC 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 209 LISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL--YD 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   +    F+V A+HG++ Q+ R  I+  F+ G  ++++ 
Sbjct: 267 TLTITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLIT 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V KEDI+ +  IE
Sbjct: 327 TDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILRDIE 386

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 387 QYYSTQIDEMPMNVADL 403


>gi|227503818|ref|ZP_03933867.1| superfamily II helicase [Corynebacterium striatum ATCC 6940]
 gi|227199642|gb|EEI79690.1| superfamily II helicase [Corynebacterium striatum ATCC 6940]
          Length = 678

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 145/383 (37%), Positives = 230/383 (60%), Gaps = 9/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL  +V  AV   G+ +P+PIQ +TIP++++  DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 56  FATLGLPEEVQQAVAKVGFTQPSPIQEQTIPILMEGRDVVGLAQTGTGKTAAFALPVLSQ 115

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLER 121
           ++     VR P+ L+L PTRELA QVAD+F+ +  +      L I G   +  Q   L R
Sbjct: 116 VDP---EVRHPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRR 172

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  +G L ++ +  LV+DEAD ML+MGF   ++ I    P  +Q  
Sbjct: 173 GAQIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILEDTPEEKQVA 232

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++S+ +L +P  + V +   T + I   ++ T  +           +  
Sbjct: 233 LFSATMPNSIRRLSKQYLNDPAEVTVKSERRTNDNITQRYLLTPHRQKMDAFTRILEVIE 292

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D +   I+FC  K     +  SL   G++  AI+G+I Q+ R + +   K+G + ++VA
Sbjct: 293 YDAI---IVFCRTKHETEEVADSLRDAGYNAAAINGDIAQQQRERTVDQLKDGRLDILVA 349

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 350 TDVAARGLDVDRITHVVNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 409

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
           ++   +++ +  DL S +   EK
Sbjct: 410 RVTNARLEEM--DLPSADAVNEK 430


>gi|71995724|ref|NP_490761.2| hypothetical protein Y65B4A.6 [Caenorhabditis elegans]
 gi|31746585|gb|AAK29954.2| Hypothetical protein Y65B4A.6 [Caenorhabditis elegans]
          Length = 399

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 214/377 (56%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + IP +L+  DV   AQ+GTGKTA+F + +L 
Sbjct: 27  TFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQ 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 87  SLDT---QVRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDY 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   + +I   +P   Q +
Sbjct: 144 GQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVV 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L+      
Sbjct: 204 LLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDL--YD 261

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   ++FCN ++ V  L   +++  F+V ++HG+++Q+ R +++  F+ GT +++++
Sbjct: 262 TLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLIS 321

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  V N+D+PN  E YIHRIGR+GR GR G A   V ++D++ +  IE
Sbjct: 322 TDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDIE 381

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ +
Sbjct: 382 QYYSTQIDEMPMNIADI 398


>gi|319944378|ref|ZP_08018652.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
 gi|319742339|gb|EFV94752.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
          Length = 546

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 180/475 (37%), Positives = 268/475 (56%), Gaps = 30/475 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+D GL P V+ AV  AGY KPTPIQ K IP+V+  HDV   AQTGTGKTA F LP++
Sbjct: 18  VTFSDFGLHPDVLKAVTAAGYTKPTPIQAKAIPVVMAGHDVMAAAQTGTGKTAGFALPII 77

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +L    +    P        I+ PTRELA Q+ DN + Y +   L  A + GG+  + Q
Sbjct: 78  NVLMPSASHSASPARHPVRALIIAPTRELADQIHDNVKTYIQFTPLRSAAVFGGVDMQPQ 137

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G ++LI TPGR+LDH  +  + ++ +++LV+DEADRMLDMGF+P IQ I +L+ 
Sbjct: 138 TNALRAGVEILIATPGRLLDHVQQKSVNLSQVQLLVLDEADRMLDMGFLPDIQRIINLLN 197

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ L+FSAT +DE++K+++ FL  PK IEV  P++ AE +E       ++  K+ A+ 
Sbjct: 198 PRRQNLMFSATFSDEIRKLAKRFLNEPKLIEVARPNTLAENVEQTVYHVPSEDLKRDAVG 257

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 +  ++  I+F N K     L   L+K+GF   AIHG+  Q+ R+K L  FK G 
Sbjct: 258 AL--IRERGIEQVIVFSNTKIGAGRLARHLQKEGFLAEAIHGDKSQQERLKTLDGFKAGE 315

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+AARGLDI ++  V N+D+P+  E+Y+HRIGRTGRAG  G A +L+   D K
Sbjct: 316 IKVLVATDVAARGLDIAELPAVINYDLPHSPEDYVHRIGRTGRAGASGMALSLMVDHDQK 375

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +  IEKL ++K+     D+  L  P      A+    R++          D R+ +   
Sbjct: 376 ALAEIEKLTKRKL-----DVQELQLPAS----ARGRGERRSR---------DDRRGHREG 417

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLG-FRGNMP----AFMLPKNRGKLNDKL 465
            +     ++S  I    +  ++  +   G  RG+ P    A   P  +  ++D L
Sbjct: 418 GEETARSEDSRGIGAPSRSGRDRGSRREGNLRGHAPSAERAARYPAPQPVVDDPL 472


>gi|146329248|ref|YP_001209905.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
 gi|146232718|gb|ABQ13696.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
          Length = 442

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 150/445 (33%), Positives = 241/445 (54%), Gaps = 12/445 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++LGLS +++  +   GY KPTPIQ + IPL LQ  D+   AQTG+GKTA+FVLP+L 
Sbjct: 4   TFSELGLSTQILRTISRHGYEKPTPIQARAIPLALQGRDLLLSAQTGSGKTAAFVLPILQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL-IGGIPFEAQNKKLE 120
            L     + ++PR LI+ PTRELA QV D+  +Y + +    ++  +GG  ++ Q + L+
Sbjct: 64  QLAAEPTKSKLPRALIVIPTRELAQQVQDSVFQYSREFKELYSITLVGGTAYQKQIRALK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH   G L ++ I  LV+DEADRMLDMGF   +  I    P  RQT
Sbjct: 124 KGVSIVVATPGRLLDHVREGHLDLSQIRYLVLDEADRMLDMGFSDDMHAIIKQCPQNRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT    + K++  F  N ++I +   +S  E I +       + +     +   L 
Sbjct: 184 IMSSATWDGNVGKIAAGFTHNAEKIIIAPETSHIEEISYFTDDQAHKNA-----VLDRLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + +   I+F   K     + H L + GF    +HG++ Q+ R +I+  F+ G I ++V
Sbjct: 239 ADEAVTQCIVFTATKSTTETVAHHLYENGFQAQFLHGDLQQQKRNRIIERFRNGQINVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DIP + HV N+D+P ++E+Y+HRIGR+GRAGR G A  LV+  D   +  I
Sbjct: 299 ATDIAARGIDIPAISHVINYDLPRQSEDYVHRIGRSGRAGRSGVALNLVSLTDRAAMAHI 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+ +++ +       + +   LE   +              ++ G     +  S  KS  
Sbjct: 359 ERYLKRAIK------TDVLEGLEPTKVPSKKKPSSGRGKTWQARGAKNGSRANSEAKSAR 412

Query: 421 PLKESEKISKLQQDIQENDADSLGF 445
                 K  K+    + + A+   F
Sbjct: 413 GNWHDRKTGKITVARKRSRAEGKSF 437


>gi|91228021|ref|ZP_01262106.1| ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
 gi|269964531|ref|ZP_06178770.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|91188250|gb|EAS74549.1| ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
 gi|269830658|gb|EEZ84878.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 439

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 140/432 (32%), Positives = 218/432 (50%), Gaps = 10/432 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL P+V+  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADLGLKPQVIEGLDKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 E    +   PR +I+ PTRELA Q+ ++ E   ++  L  AL  GG  ++ Q  
Sbjct: 70  HLLTTPEHEGRKPTQPRAIIMAPTRELAIQIYNDAESLTESTGLKTALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G D+LI T GRI+D + +    +NNI+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           ++ L    + T   +     F       E        +T        +   ++    L Q
Sbjct: 190 KERLNMLFSATLSYRVQELAFEH-MNTPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R KIL  F +G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAVNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE+ IE  +     D    +  L  P+ ++   ++   R N    +  +G  + +   
Sbjct: 369 PAIEEYIEHTIPVSEYDSSALIQDLPAPI-RMRAPRNQQRRTNTGGTRSGSGNRKPQGRR 427

Query: 414 SSQKSHIPLKES 425
             Q      K+S
Sbjct: 428 PRQPRQSAPKQS 439


>gi|157146569|ref|YP_001453888.1| ATP-dependent RNA helicase RhlE [Citrobacter koseri ATCC BAA-895]
 gi|157083774|gb|ABV13452.1| hypothetical protein CKO_02330 [Citrobacter koseri ATCC BAA-895]
          Length = 454

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 160/391 (40%), Positives = 234/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L   +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITQQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPPK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 QMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKID 386
             IEKL++K++  +   G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRITTPGYEPDPSIKAEPIQ 388


>gi|74317119|ref|YP_314859.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
 gi|74056614|gb|AAZ97054.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 460

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 155/423 (36%), Positives = 236/423 (55%), Gaps = 16/423 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGL+P ++ A+ + GYV PTPIQ + IP  LQ  D+ G AQTGTGKTA+F LP++ 
Sbjct: 3   TFAELGLAPDILRALDEMGYVSPTPIQAQVIPRALQGGDILGAAQTGTGKTAAFALPLIQ 62

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QV +  + Y K+  L   ++ GG+    Q 
Sbjct: 63  RLLPFANTSTSPAKHPIRALILTPTRELAIQVEEAIQAYTKHVPLRSLVVYGGVNINTQI 122

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+ G ++L+ TPGR+LDH     L++  +  LV+DEADRMLDMGF+P ++ I +L+P 
Sbjct: 123 PILKTGVEILVATPGRLLDHVQNKTLMLTQVNTLVLDEADRMLDMGFMPDLRRIVALLPA 182

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R  ++FSAT  +E++K++++ L  P  IEV       ET        +  + ++   L 
Sbjct: 183 QRVNMMFSATFPEEIRKLADSILSTPTFIEVAR----NETAVTVTQVVHPVHHERKRQLL 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L     ++  ++F   K     L + L K G    AIHG+  Q+ R+K L  FK GTI
Sbjct: 239 AHLIKSRDLRQVLVFTGTKLGCNRLANELNKAGIHADAIHGDKTQQERIKALDAFKAGTI 298

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARG+DI  +  V N+D+P+ AE+Y+HRIGRTGRAG  G+A +LV++ + ++
Sbjct: 299 RVLVATDVAARGIDIEALPFVVNYDLPHNAEDYVHRIGRTGRAGAKGEAISLVSEAETRY 358

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  IE+LI   ++     +    P    +   +   AR       +S+   R +     Q
Sbjct: 359 LKDIERLIGTPLE--PVIVPGFEPGAADVPAFESRPARAP-----RSSDRGRERAPAKPQ 411

Query: 417 KSH 419
            S 
Sbjct: 412 PSR 414


>gi|114046344|ref|YP_736894.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113887786|gb|ABI41837.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 549

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 181/484 (37%), Positives = 262/484 (54%), Gaps = 23/484 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV + GY  P+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSSLGLSLPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   +    R L+L PTRELAAQV+++ E YGK   L  A++ GG+P   Q +KL
Sbjct: 61  ELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR+LD   +  +  N +EILV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RHGVDVLVATPGRLLDLVQQNVVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++++++  +  P  I V   ++ A T++               +     
Sbjct: 181 NLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  +  ++F   K     L  SL +   S  AIHGN  Q +R K L++FK G ++++
Sbjct: 238 IKQEDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ E+ K +  
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEFKLLRD 357

Query: 360 IEKLIEKKVDWLNGD-------------LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
           IE+LI + ++    +             ++       K   +Q  H     P P+  TG 
Sbjct: 358 IERLINRVLERQEIEGFGPAHALPESTLIAHGKDNKVKAVASQRKHRSAGKPTPRTGTGR 417

Query: 407 DRRKKNYS-----SQKSHIPLK-ESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
           D RK   S      QK+  P + +     + ++     +A+      +  A   PK + K
Sbjct: 418 DGRKTPDSIDGSAQQKNSNPNQGQRNNQGQHKRPQSSKNAEHKNTHSSTEAGRTPKPQDK 477

Query: 461 LNDK 464
               
Sbjct: 478 RPQH 481


>gi|229542534|ref|ZP_04431594.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
 gi|229326954|gb|EEN92629.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
          Length = 475

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 145/367 (39%), Positives = 225/367 (61%), Gaps = 6/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L LSP ++ AV   G+ + +PIQ  TIPL +Q  D+ G AQTGTGKTA+F +P++ 
Sbjct: 3   KFSELNLSPAILKAVKRMGFEEASPIQAATIPLTMQGKDIIGQAQTGTGKTAAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    R R  + +I+ PTRELA QV++   + G++  + V  + GG     Q + L+ 
Sbjct: 63  KIDH---RSRNIQGIIIAPTRELAIQVSEELYRIGQDSRVHVLAVYGGQDISRQIRALKN 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH +RG L ++++  LV+DEAD ML+MGFI  I+ I S VP  RQT+
Sbjct: 120 HPQIIVGTPGRILDHIHRGTLKLDHVHTLVLDEADEMLNMGFIDDIEAILSTVPKDRQTM 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++K++E F+ NP+ + V     T  +I            ++   +   L  
Sbjct: 180 LFSATMPDPIRKIAERFMNNPELVRVKAKEMTVPSI---EQYYVKVQEREKFDVLSRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             +    I+F   K+ V  L ++L  +G+    IHG++ Q  R+ +L  FK+G I ++VA
Sbjct: 237 VQSPDLAIVFGRTKRRVDELANALNLRGYLAEGIHGDLSQAKRLSVLRKFKDGKIDVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAGR G A T V   ++ ++  +E
Sbjct: 297 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGREGMAMTFVTPREMGYLKTVE 356

Query: 362 KLIEKKV 368
           +  +K++
Sbjct: 357 QTTKKRM 363


>gi|333009786|gb|EGK29235.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-272]
 gi|333020451|gb|EGK39714.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-227]
          Length = 454

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSVAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|260770664|ref|ZP_05879595.1| ATP-dependent RNA helicase RhlB [Vibrio furnissii CIP 102972]
 gi|260614390|gb|EEX39578.1| ATP-dependent RNA helicase RhlB [Vibrio furnissii CIP 102972]
 gi|315178384|gb|ADT85298.1| ATP-dependent RNA helicase RhlB [Vibrio furnissii NCTC 11218]
          Length = 435

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 138/413 (33%), Positives = 212/413 (51%), Gaps = 5/413 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD GL P+VV  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADFGLHPQVVEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFH 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 E    +   PR +I+ PTRELA Q+ ++ E    +  +  AL  GG  ++ Q  
Sbjct: 70  HLLTTPEIEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G DVLI T GRI+D + +    +NNI+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLQDGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +  L    + T   +     F       E      T +T        +   ++    L Q
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMHN-PEHVVVEPTQKTGHRIKEELFYPSNEHKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     I+F N K     +   L   G  V  ++G++ Q+ R +IL  F +G + 
Sbjct: 249 TLLEEEWPDRAIVFANTKHRCEQIWGHLAADGHRVGLLNGDVPQKKRERILEQFTKGELD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 309 VLVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
             IE+ IE  +     D S+L   L K    + +  R+ N   Q++ G  + +
Sbjct: 369 PGIEEYIEHAIPTSEYDPSALLTDLPKALTMRSSQQRRTNTGGQRNNGNRKSQ 421


>gi|168180793|ref|ZP_02615457.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|226950212|ref|YP_002805303.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           botulinum A2 str. Kyoto]
 gi|182668220|gb|EDT80199.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|226841562|gb|ACO84228.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 524

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 140/383 (36%), Positives = 224/383 (58%), Gaps = 5/383 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L L+  V+ A+   G+  P+ IQ K+IP+VL+  DV   AQTGTGKT +F  P+++
Sbjct: 5   NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   + + +  + L+L PTRELA Q+ D  ++  K     V  + GG   E Q K ++ 
Sbjct: 65  AL-CDKEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKS 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR+LDH NR  L +  I+ LV+DEAD ML+MGFI  I+ I       +QT+
Sbjct: 124 GVDIVVGTPGRVLDHINRRTLKLGGIDFLVLDEADEMLNMGFIEDIETIMESTSEEKQTM 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++K++ N+++           S                 K  AL +  +  
Sbjct: 184 LFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAVKNKDKLEALCR--IID 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  ++ IIFC  K+ V  L  +++ +G++V  +HG++ Q  R+  L  FK+ T+  +VA
Sbjct: 242 SEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ ++ HV N+D+P  AE+Y+HRIGRTGRA + G A++LV   ++  I  IE
Sbjct: 302 TDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIE 361

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
           ++ + K+     +L +L   LEK
Sbjct: 362 RITKSKIK--KKELPTLEDILEK 382


>gi|254230204|ref|ZP_04923597.1| ATP-dependent RNA helicase RhlB [Vibrio sp. Ex25]
 gi|262392870|ref|YP_003284724.1| ATP-dependent RNA helicase RhlB [Vibrio sp. Ex25]
 gi|151937289|gb|EDN56154.1| ATP-dependent RNA helicase RhlB [Vibrio sp. Ex25]
 gi|262336464|gb|ACY50259.1| ATP-dependent RNA helicase RhlB [Vibrio sp. Ex25]
          Length = 439

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 140/432 (32%), Positives = 218/432 (50%), Gaps = 10/432 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL P+V+  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADLGLKPQVIEGLDKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 E    +   PR +I+ PTRELA Q+ ++ E   ++  L  AL  GG  ++ Q  
Sbjct: 70  HLLTTPEHEGRKPTQPRAIIMAPTRELAIQIYNDAEALTESTGLKTALAYGGESYDKQLN 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G D+LI T GRI+D + +    +NNI+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           ++ L    + T   +     F       E        +T        +   ++    L Q
Sbjct: 190 KERLNMLFSATLSYRVQELAFEH-MNTPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R KIL  F +G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE+ IE  +     D    +  L  P+ ++   ++   R N    +  +G  + +   
Sbjct: 369 PAIEEYIEHTIPVSEYDSSALIQDLPAPI-RMRAPRNQQRRTNTGGTRSGSGNRKPQGRR 427

Query: 414 SSQKSHIPLKES 425
             Q      K+S
Sbjct: 428 PRQPRQSAPKQS 439


>gi|293397166|ref|ZP_06641440.1| ATP-dependent RNA helicase RhlE [Serratia odorifera DSM 4582]
 gi|291420637|gb|EFE93892.1| ATP-dependent RNA helicase RhlE [Serratia odorifera DSM 4582]
          Length = 447

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 170/450 (37%), Positives = 254/450 (56%), Gaps = 20/450 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS +++ AV + GY +PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPVL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L K    V   R  R LIL PTRELAAQ+ +N + Y K+  L   ++ GG+    Q  
Sbjct: 61  QLLSKHDHAVKGRRPVRALILTPTRELAAQIGENVQAYSKHLRLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + S +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLSKLPPK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I     + +    K+   L  
Sbjct: 181 RQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQI---EQSVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G I+
Sbjct: 238 QMIGEGDWRQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHAR------------KNNPIPQKS 403
             IE+L+++++    L G         E I   +    R             N    +++
Sbjct: 358 RDIERLLKREIPRIALPGYEPDPTIKAEPIINGRQGGGRGAPRGNGGGQRNGNGGGQREN 417

Query: 404 TGFDRRKKNYSSQKSHIPLKESEKISKLQQ 433
            G    +     Q+   P     + SK  +
Sbjct: 418 RGNGNARPQGDGQRRGAPPARRPRRSKPAE 447


>gi|260663734|ref|ZP_05864622.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
 gi|260551785|gb|EEX24901.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
          Length = 495

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 154/441 (34%), Positives = 243/441 (55%), Gaps = 14/441 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGLS K++ A+  +GY + TPIQ +TIP+VL   DV G AQTGTGKTA+F LP +  
Sbjct: 6   FSELGLSNKLLKAIQRSGYEEATPIQEQTIPMVLAGKDVIGQAQTGTGKTAAFGLPTIEH 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++         + LI+ PTRELA Q  +   + GK   + V ++ GG     Q + LE+ 
Sbjct: 66  VDV---ENPAIQALIISPTRELAIQTEEELFRLGKEKRVKVQVVYGGADIRRQIRSLEKN 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +L+ TPGR+ DH  RG + ++ ++ LV+DEAD ML+MGF+  I++I    P  RQTLL
Sbjct: 123 PQILVGTPGRLRDHLRRGTVDLSGVQTLVLDEADEMLNMGFLEDIEDIIKQTPSERQTLL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++++   F+ +P+ +++     T + ++  +V                +   
Sbjct: 183 FSATMPPEIKRIGVQFMHDPQTVKIKAKELTTDLVDQYYVRAKDYEKFDIMTR---MIDV 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F   K+ V  L   L  +G++   IHG++ Q  R KI+  FKEG + ++VA+
Sbjct: 240 QDPDLTIVFGRTKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDILVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P+  ++Y+HRIGRTGRAG HG + T V   ++ ++  IEK
Sbjct: 300 DVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMNYLHEIEK 359

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPL 422
           L   +       +  L PP E+ +  +   A   N I          + +  + K     
Sbjct: 360 LTRAR-------MLPLKPPTEE-EAFRGQVASAYNDIDSLVADPTTNRYSEDAAKLLEKY 411

Query: 423 KESEKISKLQQDIQENDADSL 443
              E ++ L  D+ ++DA  +
Sbjct: 412 DAVELVAALLNDLTKDDASQV 432


>gi|227432573|ref|ZP_03914553.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227351656|gb|EEJ41902.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 536

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 147/373 (39%), Positives = 223/373 (59%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++LGLS  ++ A+   GYV+ TPIQ KTIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 13  LKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGRDVIGQAQTGTGKTAAFGLPIL 72

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    LI+ PTRELA Q A+  +K G++  + V ++ GG     Q + L+
Sbjct: 73  EHIDLNNKNIQ---ALIVSPTRELAIQTAEELKKLGRDKRVDVQVVFGGADIRRQIQNLK 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LDH NR  + ++++  LV+DEAD ML+MGF+  I+ I S  P  RQT
Sbjct: 130 SHPQILVGTPGRLLDHINRKTVKIDSVRTLVLDEADEMLNMGFLDDIEAIISKTPAERQT 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+ NP+ I++     T + +             +       + 
Sbjct: 190 LLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLV---DQYFVRMRENEKFDTMTRIF 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  I+F   K+ V  L   LE +G+    +HG++ Q+ R ++L+ FK   I ++V
Sbjct: 247 DVQAPKLAIVFGRTKRRVEELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HV+NFD+P   E+Y+HRIGRTGRAG  G + T VA  ++ ++ A+
Sbjct: 307 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTFVAPNEMDYLRAV 366

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 367 EDLTKKRMTPLEP 379


>gi|227514325|ref|ZP_03944374.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus fermentum
           ATCC 14931]
 gi|227087297|gb|EEI22609.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus fermentum
           ATCC 14931]
          Length = 495

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 154/441 (34%), Positives = 243/441 (55%), Gaps = 14/441 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGLS K++ A+  +GY + TPIQ +TIP+VL   DV G AQTGTGKTA+F LP +  
Sbjct: 6   FSELGLSNKLLKAIQRSGYEEATPIQEQTIPMVLAGKDVIGQAQTGTGKTAAFGLPTIEH 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++         + LI+ PTRELA Q  +   + GK   + V ++ GG     Q + LE+ 
Sbjct: 66  VDV---ENPAIQALIISPTRELAIQTEEELFRLGKEKRVKVQVVYGGADIRRQIRSLEKN 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +L+ TPGR+ DH  RG + ++ ++ LV+DEAD ML+MGF+  I++I    P  RQTLL
Sbjct: 123 PQILVGTPGRLRDHLRRGTVDLSGVQTLVLDEADEMLNMGFLEDIEDIIKQTPSERQTLL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++++   F+ +P+ +++     T + ++  +V                +   
Sbjct: 183 FSATMPPEIKRIGVQFMHDPQTVKIKAKELTTDLVDQYYVRAKDYEKFDIMTR---MIDV 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F   K+ V  L   L  +G++   IHG++ Q  R KI+  FKEG + ++VA+
Sbjct: 240 QDPDLTIVFGRTKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDILVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P+  ++Y+HRIGRTGRAG HG + T V   ++ ++  IEK
Sbjct: 300 DVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMNYLHEIEK 359

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPL 422
           L   +       +  L PP E+ +  +   A   N I          + +  + K     
Sbjct: 360 LTRAR-------MLPLKPPTEE-EAFRGQVASAYNDIDSLVADPTTNRYSEDAAKLLEKY 411

Query: 423 KESEKISKLQQDIQENDADSL 443
              E ++ L  D+ ++DA  +
Sbjct: 412 DAVELVAALLNDLTKDDASQV 432


>gi|20149756|ref|NP_619610.1| eukaryotic initiation factor 4A-III [Mus musculus]
 gi|42560197|sp|Q91VC3|IF4A3_MOUSE RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|14198152|gb|AAH08132.1| Eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|15277517|gb|AAH12862.1| Eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|74138617|dbj|BAE27130.1| unnamed protein product [Mus musculus]
 gi|74142343|dbj|BAE31931.1| unnamed protein product [Mus musculus]
 gi|74146845|dbj|BAE41387.1| unnamed protein product [Mus musculus]
 gi|74186129|dbj|BAE34233.1| unnamed protein product [Mus musculus]
 gi|74188979|dbj|BAE39256.1| unnamed protein product [Mus musculus]
 gi|74212198|dbj|BAE40258.1| unnamed protein product [Mus musculus]
 gi|74214032|dbj|BAE29433.1| unnamed protein product [Mus musculus]
 gi|74220630|dbj|BAE31525.1| unnamed protein product [Mus musculus]
 gi|122889626|emb|CAM14996.1| eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|123264877|emb|CAM18884.1| eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|148702746|gb|EDL34693.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48 [Mus musculus]
          Length = 411

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 99  CLDI---QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 216 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 274 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 334 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 393

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 394 QYYSTQIDEMPMNVADL 410


>gi|238913888|ref|ZP_04657725.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 455

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 165/439 (37%), Positives = 244/439 (55%), Gaps = 24/439 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 QMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKIDIAQHNH----------------ARKNNPI 399
             IEKL++K++  +   G     +   E I   +                    R   P 
Sbjct: 358 RDIEKLLKKEIPRITTPGYEPDPSIKAEPIQNGRQQRGGGGGGRGRGQNQGGAGRSQQPR 417

Query: 400 PQKSTGFDRRKKNYSSQKS 418
            Q S     + K  + ++ 
Sbjct: 418 RQDSGAAKAKPKPRTGEEK 436


>gi|197247942|ref|YP_002145775.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197211645|gb|ACH49042.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 453

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 165/435 (37%), Positives = 243/435 (55%), Gaps = 22/435 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 QMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKIDIAQHNH--------------ARKNNPIPQ 401
             IEKL++K++  +   G     +   E I   +                  R   P  Q
Sbjct: 358 RDIEKLLKKEIPRITTPGYEPDPSIKAEPIQNGRQQRGGGGRGRGQNQGGAGRNQQPRRQ 417

Query: 402 KSTGFDRRKKNYSSQ 416
            S     + K  + +
Sbjct: 418 DSGAAKAKPKPRTGE 432


>gi|326928709|ref|XP_003210518.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Meleagris gallopavo]
          Length = 1027

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 143/448 (31%), Positives = 232/448 (51%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ A+   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 369 TWVQCGISMKILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFR 428

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 429 HIMDQRALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 488

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     N     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 489 KRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 548

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S               +   K   L 
Sbjct: 549 DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSD--VEQHVIVIEEENKFLKLL 606

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT 
Sbjct: 607 ELLGHYQEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTC 666

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 667 KLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARY 726

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E   + +  DL       EK+        +    + +KS+GF  +   +   
Sbjct: 727 AGDIIKALELSGNPIPADL-------EKLWADFKEQQKAEGKLIKKSSGFSGKGFKFDET 779

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +   E +K+ K    +Q++D +   
Sbjct: 780 EQAL-ANERKKLQKAALGLQDSDDEDTA 806


>gi|319902651|ref|YP_004162379.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
 gi|319417682|gb|ADV44793.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
          Length = 422

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 159/422 (37%), Positives = 240/422 (56%), Gaps = 8/422 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+ + GY  PTPIQ K+IP++LQ  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MTFENLKLIEPILKALQEEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K   R    + LIL PTRELA Q+ ++FE YGK   L   ++ GG+  + Q   L+
Sbjct: 61  QKLYKTDNRKG-IKALILTPTRELAIQIGESFEAYGKYTGLKHTVIFGGVGQKPQTDDLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +LI TPGR+ D  N+G + +  ++  V+DEADRMLDMGFI  I+ I  ++P  RQT
Sbjct: 120 RGTQILIATPGRLQDLVNQGFINLKTLDFFVLDEADRMLDMGFIHDIRRILKMLPTQRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++ ++ + L NP ++EV   SST +TI         +  K   +      
Sbjct: 180 LFFSATMPSEIETLANSMLSNPAKVEVTPVSSTVDTISQSVYFVEKKEKKDLLIHLL--- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +++ ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  TI++++
Sbjct: 237 KNTAIESVLVFTRTKYGADKLARILSKSGISAEAIHGNKSQNARQRALTGFKSHTIRVLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+++PN  E Y+HRIGRTGRAG  G A +    E++ ++  I
Sbjct: 297 ATDIAARGIDVEQLSHVINYELPNVPETYVHRIGRTGRAGHEGTALSFCESEELPYLKDI 356

Query: 361 EKLIEKKVDWLNGDL----SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +KLI K +  +          +N    K +  +           ++S G   R++  ++Q
Sbjct: 357 QKLIGKTIPVIEHHPFITTEGINAQEVKTEEIKAKAKENKTYRGKRSNGDFWRRQKRTAQ 416

Query: 417 KS 418
            +
Sbjct: 417 NN 418


>gi|118097584|ref|XP_414629.2| PREDICTED: similar to Prp5-like DEAD-box protein [Gallus gallus]
          Length = 1043

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 143/448 (31%), Positives = 232/448 (51%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ A+   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 377 TWVQCGISMKILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFR 436

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 437 HIMDQRALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 496

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     N     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 497 KRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 556

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S               +   K   L 
Sbjct: 557 DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSD--VEQHVIVIEEENKFLKLL 614

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT 
Sbjct: 615 ELLGHYQEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTC 674

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 675 KLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARY 734

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E   + +  DL       EK+        +    + +KS+GF  +   +   
Sbjct: 735 AGDIIKALELSGNPIPADL-------EKLWADFKEQQKAEGKLIKKSSGFSGKGFKFDET 787

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +   E +K+ K    +Q++D +   
Sbjct: 788 EQAL-ANERKKLQKAALGLQDSDDEDTA 814


>gi|325284979|ref|YP_004260769.1| DEAD/DEAH box helicase domain-containing protein [Cellulophaga
           lytica DSM 7489]
 gi|324320433|gb|ADY27898.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
           7489]
          Length = 429

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 164/427 (38%), Positives = 250/427 (58%), Gaps = 12/427 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS  ++ A+   GY  P+PIQ K IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MTFKNLGLSNNLLKAIDKKGYTTPSPIQEKAIPPVLEGKDVLASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L + +A    P    IL PTRELAAQ+  N ++Y +  +L  A++ GG+  + Q   L
Sbjct: 61  HLLSEQKALRHRPVRALILTPTRELAAQIFANVKEYSEFLDLRSAVIFGGVNQKPQIANL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG DVL+ TPGR+LD  N+  L ++ +EI V+DEADRMLDMGF+  I+ +  L+P  RQ
Sbjct: 121 KRGMDVLVATPGRLLDLHNQRFLSLDKVEIFVLDEADRMLDMGFLRDIERVMKLIPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT + +++K++   L NP ++E    ++  E I+               +     
Sbjct: 181 NLMFSATFSKDIKKLAHGILNNPIQVEATPENTAVEVIKQKVYRVAKGKKTGLIIKL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S    +  ++F   K    NLC  +  +G S  AIHGN  Q +R K L  FK+GT++++
Sbjct: 238 ISDGNWQQVLVFTRTKHGANNLCKKMSSKGISAAAIHGNKSQGARTKALDGFKKGTLRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + HV N+++PN +E+Y+HRIGRTGRAG  G+A +LV+ ++  ++  
Sbjct: 298 VATDIAARGLDIPLLPHVINYEIPNISEDYVHRIGRTGRAGASGEAVSLVSADETTYLKD 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQ------HNHARKNNPIPQKSTGFDRRKK 411
           I+KLI  ++  + + G     N   + I   Q       + ++      + +T  +RR K
Sbjct: 358 IQKLIGMQIPVEIVEGFEPDPNASTKPIKQGQRNNRSRSSSSKPKGGASKNNTSNNRRPK 417

Query: 412 NYSSQKS 418
             + ++S
Sbjct: 418 RNNDRRS 424


>gi|204929853|ref|ZP_03220874.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204320847|gb|EDZ06048.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 453

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 165/435 (37%), Positives = 243/435 (55%), Gaps = 22/435 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQLHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 QMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKIDIAQHNH--------------ARKNNPIPQ 401
             IEKL++K++  +   G     +   E I   +                  R   P  Q
Sbjct: 358 RDIEKLLKKEIPRITTPGYEPDPSIKAEPIQNGRQQRGGGGRGRGQNQGGAGRSQQPRRQ 417

Query: 402 KSTGFDRRKKNYSSQ 416
            S     + K  + +
Sbjct: 418 DSGAAKAKPKPRTGE 432


>gi|257867061|ref|ZP_05646714.1| helicase [Enterococcus casseliflavus EC30]
 gi|257873396|ref|ZP_05653049.1| helicase [Enterococcus casseliflavus EC10]
 gi|257877139|ref|ZP_05656792.1| helicase [Enterococcus casseliflavus EC20]
 gi|257801117|gb|EEV30047.1| helicase [Enterococcus casseliflavus EC30]
 gi|257807560|gb|EEV36382.1| helicase [Enterococcus casseliflavus EC10]
 gi|257811305|gb|EEV40125.1| helicase [Enterococcus casseliflavus EC20]
          Length = 507

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 151/384 (39%), Positives = 227/384 (59%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS +++ +V  AG+ + TPIQ  TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKDLELSNELLTSVERAGFEEATPIQEATIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++    +++    L++ PTRELA Q  +   + GK+  + V  + GG     Q ++L+
Sbjct: 61  EKIDPTNHQLQ---GLVIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIRQLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  +E LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPDVRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F++ P+ +++     TA+ I+  +V +                
Sbjct: 178 LLFSATMPPAIKNIGVKFMKEPEHVQIKAKEMTADLIDQYYVRSKDYEKFDIMTRLL--- 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGQLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMSYLHVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       ++ + PP EK
Sbjct: 355 ENLTKKR-------MTPMRPPTEK 371


>gi|330719371|ref|ZP_08313971.1| superfamily II DNA/RNA helicase [Leuconostoc fallax KCTC 3537]
          Length = 551

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 153/401 (38%), Positives = 232/401 (57%), Gaps = 17/401 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS +++ ++ + GYV+ TPIQ KTIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFNELGLSQELLQSIAEHGYVEATPIQEKTIPLTLVGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    LI+ PTRELA Q AD  +K G++ ++ V ++ GG     Q + L+
Sbjct: 61  EHIDLNNKNIQ---ALIVSPTRELAIQTADELKKLGRDKHVDVQVVFGGADIRRQIQNLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LDH NR  + ++++  LV+DEAD ML+MGF+  I+ I    P TRQT
Sbjct: 118 SHPQILVGTPGRLLDHTNRKTVKLDHVNTLVLDEADEMLNMGFLDDIEAIIEKTPATRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F+ NP+ I++     T + +             +       + 
Sbjct: 178 LLFSATMPPAIKLIGVKFMTNPEHIQIEAKELTTDLV---DQYFVRVRENEKFDTMTRIF 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  I+F   K+ V  L   LE +G+    +HG++ Q+ R ++L+ FK   I ++V
Sbjct: 235 DVQAPKLAIVFGRTKRRVEELARGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HV+NFD+P   E+Y+HRIGRTGRAG  G + T VA  ++ ++ A+
Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAEGVSVTFVAPNEMDYLRAV 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           E L +K++            PLE   + Q    + NN   +
Sbjct: 355 ENLTKKRMT-----------PLEPATLQQARVGKINNAAGE 384


>gi|324116221|gb|EGC10143.1| DEAD/DEAH box helicase [Escherichia coli E1167]
          Length = 454

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 234/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|209518298|ref|ZP_03267123.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209501217|gb|EEA01248.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 443

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 170/413 (41%), Positives = 241/413 (58%), Gaps = 9/413 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSEPLVRAVNELGYTSPTPIQTQAIPAVLDGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                +       R+ R LIL PTRELAAQV ++   YGK   L   ++ GG+    Q  
Sbjct: 61  QRLNSMPPAAGGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQID 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+RG D+++ TPGR+LDH  +  + ++++EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 ALKRGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAET+            ++      
Sbjct: 181 RQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHL- 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               Q      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK+GT+Q
Sbjct: 240 --IRQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++++ +
Sbjct: 298 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNP-PLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             IEKLI++ V      ++   P P  K +  Q          P++  G  RR
Sbjct: 358 KDIEKLIKRPVP--QEVIAGFEPDPTAKPEPIQRRSQGGGGRSPRQGQGAGRR 408


>gi|73540602|ref|YP_295122.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72118015|gb|AAZ60278.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 537

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 164/422 (38%), Positives = 238/422 (56%), Gaps = 13/422 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL  +++ A+ + GY KPTPIQ + IP+VL   DV G AQTGTGKTA F LP++ 
Sbjct: 55  TFESFGLDARILRALSEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQ 114

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L    +    P        +L PTRELA QV DN  +Y K+ +L   ++ GG+    Q 
Sbjct: 115 RLLPMASASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQT 174

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L RG ++L+ TPGR+LDH  +  + ++ +++LV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 175 DALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPA 234

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E+++++ ++L+ P  IEV   +ST E +            +   +  
Sbjct: 235 QRQTLLFSATFSPEIKRLAASYLKQPVTIEVARSNSTNENVRQMVYQVEDGQKQAAVVHL 294

Query: 237 QLLQSQDTMKNGIIFCNQKK-NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              +++  +    I     K     L   LE++G +  AIHG+  Q  RM+ L  FK GT
Sbjct: 295 LRQRAEQGLSKQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEGFKNGT 354

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I  +VA+D+AARGLDI D+  V NFD+P  AE+Y+HRIGRTGRAG  G A ++    D +
Sbjct: 355 IDALVATDVAARGLDIADMPCVINFDLPFSAEDYVHRIGRTGRAGASGDALSIFVPGDER 414

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKI-----DIAQHNHARKNNPIPQKSTGFDRRK 410
            +  IEKLI++ V    G L   +P  EK      D  +     +         G DRR+
Sbjct: 415 LLTDIEKLIKRSVPR--GTLEGFDPTGEKARQEDSDRRRQRTDVRRARGNGDGEGEDRRR 472

Query: 411 KN 412
           ++
Sbjct: 473 RH 474


>gi|90414211|ref|ZP_01222192.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90324761|gb|EAS41299.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 431

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 160/435 (36%), Positives = 249/435 (57%), Gaps = 12/435 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA    SP++V A+ + GY K TPIQ + IP   +  D+   AQTGTGKTA+F LP++
Sbjct: 1   MSFASQNFSPEIVRALTECGYEKLTPIQQQAIPHARRGSDILANAQTGTGKTAAFSLPII 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                +         R LIL PTRELAAQ+A N  +Y K  +L  A + GG    +Q + 
Sbjct: 61  QQILDKPKSRGRFNVRALILAPTRELAAQIAQNIAEYTKYTDLKTAAIYGGTKMSSQERT 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE+G D+L+ TPGR+++H +   + + NIE LV DEADRMLDMGFI  ++ +   V    
Sbjct: 121 LEKGVDILVATPGRLIEHVDLKNVSLTNIEFLVFDEADRMLDMGFITDMRKVMGEVNSNP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + ++  ++ + L+ PKRI V+  ++TA+T+ H       +  ++       
Sbjct: 181 QIMMFSATSSKQMNALASDILRKPKRIMVDRENTTADTVAHVVYPVDQERKRELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   K  ++F N K+    L   L+K G      HG+  Q +R + L  FKEG  ++
Sbjct: 239 -IGKKNWKQVLVFVNYKETANELVKELKKDGIKAVLCHGDKAQSARRRALDEFKEGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+++AARGLDI  + HV NFD+P  AE+Y+HRIGRTGRAG  G A + V+KE+   + 
Sbjct: 298 MVATEVAARGLDIQALPHVVNFDMPFLAEDYVHRIGRTGRAGLKGHAISFVSKEEELTLV 357

Query: 359 AIEKLIEKKV---DWLNGDLSSLNPPLEKIDIA---QHNHARKNNPIPQKSTGFDRRKKN 412
            +E+LI +++     L  + ++ +  ++K++     +   +R NNP  Q+S+  +RR + 
Sbjct: 358 QVEQLIGQRIHRVQLLGYEPTNRDAFVQKMNTKAAFKDRKSRTNNPSEQQSSS-ERRVRL 416

Query: 413 YSSQKSHIPLKESEK 427
             + KS   +   +K
Sbjct: 417 RQAIKSKAKITTLKK 431


>gi|307319802|ref|ZP_07599226.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
 gi|306894533|gb|EFN25295.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
          Length = 504

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 163/460 (35%), Positives = 250/460 (54%), Gaps = 4/460 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  +V  +   G+ KPTPIQ + IPLVL+ HD+ G+AQTGTGKTA+F LPM+ 
Sbjct: 3   TFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIE 62

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L     R   R  R L+L PTREL  Q+A N + + K   L + L++GG+    Q ++L
Sbjct: 63  KLVADGRRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD  +R  + +     LV+DEAD+MLD+GFI  ++ I+ LVP  RQ
Sbjct: 123 ARGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKNRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + +++  +L +P ++EV+ P   A+ +E        +  K      +  
Sbjct: 183 TLLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTI--LKQT 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +     +IF   K     L   L+  GF   +IHGN  Q  R + L  F++G I+++
Sbjct: 241 LTANPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V HV+N+D+P   + Y+HRIGRT R GR G A    A ++I+ +  
Sbjct: 301 VATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRD 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IEKL+  ++   +G+  +      K    + N   + N  P+ +    R+      +   
Sbjct: 361 IEKLMGIQIAVASGEAPADQARPSKGRGGRGNGQPRGNAQPRGNGAGQRQGGPRRDRPQR 420

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRG 459
                     +L +D + ++       G+ PA   P+   
Sbjct: 421 QAAAGGFAGDELLRDERSHERRDQRAVGHGPADGRPEGHR 460


>gi|150017632|ref|YP_001309886.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149904097|gb|ABR34930.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 481

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 127/400 (31%), Positives = 226/400 (56%), Gaps = 12/400 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  LS +++ A+    + + T +Q + IP+ L+  D+   ++TG+GKTAS+ +P+  
Sbjct: 5   NFNDYKLSSELLKAISMLNFKELTKVQEQVIPIALEEKDIVVKSKTGSGKTASYAIPICQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    +   P+ L++ PTRELA QV ++F   G+   +  A + G   F  Q K+L++
Sbjct: 65  LVDWEENK---PQALVITPTRELAIQVKEDFFNIGRFKRIKAAAIYGKSSFYDQEKELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI+DH  +G   ++ I+ L+IDEAD ML+MGF+  I+ I   +   R T+
Sbjct: 122 KTHIVVGTPGRIIDHIEKGTFDLSKIKYLIIDEADEMLNMGFVEQIETIIKSLSKERVTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  +++ +   ++++P  IE+   +  A+ I                   + +  
Sbjct: 182 LLSATMPKDIETLCNKYMKDPIHIEIEEQNKAADNICQERYNVNELNKIDL---LRDITI 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + +IFCN K+ V  +   L K  +    IHG ++Q  R+++++NFK G  + ++A
Sbjct: 239 LENPDSCMIFCNTKQKVDEVYKELAKLQYDCRKIHGGMEQSDRLRVMNNFKLGYFRYLIA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HRIGRTGRAG+ G+A T V + + K ++ I 
Sbjct: 299 TDVAARGIDIDNITHVINYDIPEDKESYVHRIGRTGRAGKMGRAITFVTQNESKFLNDIH 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           + I K++           P +E ++  +   A K N  P+
Sbjct: 359 EYIGKEIPLKE------RPKVETVNNLKEEFALKMNTRPE 392


>gi|227894493|ref|ZP_04012298.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus ultunensis
           DSM 16047]
 gi|227863652|gb|EEJ71073.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus ultunensis
           DSM 16047]
          Length = 496

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 145/382 (37%), Positives = 225/382 (58%), Gaps = 14/382 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+  ++ A+  +G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-L 119
             ++K   + +  + +I+EPTRELA Q  +   + G++    V ++ GG     Q +   
Sbjct: 61  QTIDK---KEKAIQAIIIEPTRELAIQTQEELFRLGRDERAHVQVVYGGADIGRQIRSLK 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LDH  RG + ++ ++ +V+DEAD MLDMGFI  I++I       +Q
Sbjct: 118 HHVPSILVGTPGRLLDHLKRGTIDLDKVKTVVLDEADEMLDMGFIQDIESILKYAKNRKQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + ++ E F+ NP+ +++     TA+ I+  FV                 
Sbjct: 178 TLLFSATMPKPILRIGEKFMNNPEIVQIKAKELTADLIDQYFVRAKESEKFDIMCRL--- 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++F   K+ V  L   L+ +G++   IHG++ Q  RM +L  F+EG + ++
Sbjct: 235 IDVQGPDLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMTVLKRFREGKLDIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPP 381
           IE+L +KK       +S L PP
Sbjct: 355 IEQLTKKK-------MSPLRPP 369


>gi|150017770|ref|YP_001310024.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149904235|gb|ABR35068.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 524

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 136/366 (37%), Positives = 218/366 (59%), Gaps = 5/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL   ++ A+   G+ +P+ IQ + IP++L+ HDV G AQTGTGKT +F  P+L+ 
Sbjct: 6   FSELGLDENILKAIDAMGFEEPSKIQAEVIPVLLEGHDVIGQAQTGTGKTLAFGAPVLSR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +     ++      IL PTRELA QV D   +  K   + +  + GG P + Q   L RG
Sbjct: 66  IRSSEGKISSI---ILTPTRELAIQVNDELNRIAKFTKIKLLPVYGGQPIDRQISALRRG 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+LD   R  L + +I+ LV+DEAD ML+MGFI  I+ I       RQT+L
Sbjct: 123 IDIVVGTPGRVLDLIRRKVLNLGSIKFLVLDEADEMLNMGFIDDIEEIIKNSNQDRQTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E++++++ ++++  +      ++    +       Y   +K        +   
Sbjct: 183 FSATMPEEIKRLAKRYMKSETKHIAILKNAMT--VATVDQYYYEIKNKDRFETLCRILDV 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D   + IIFC  K+NV  L   L+ +G++   +HG+++Q  R+  L  FKEG+++ ++A+
Sbjct: 241 DEPTSAIIFCKTKRNVDELVEGLQGRGYTAEGMHGDMNQNQRINTLRKFKEGSLEFLIAT 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+D+ +V HV N+D+P   E+Y+HRIGRTGRA R G A+TLV   +   +  IEK
Sbjct: 301 DVAARGIDVENVTHVINYDLPQDVESYVHRIGRTGRANRKGVAYTLVTAREYMSLKHIEK 360

Query: 363 LIEKKV 368
           + + K+
Sbjct: 361 VTKSKI 366


>gi|323190923|gb|EFZ76190.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli RN587/1]
          Length = 453

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 YMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|215485885|ref|YP_002328316.1| ATP-dependent RNA helicase RhlE [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312969182|ref|ZP_07783389.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2362-75]
 gi|215263957|emb|CAS08297.1| RNA helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|312286584|gb|EFR14497.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2362-75]
          Length = 453

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QYLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|161506849|ref|YP_001576803.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus DPC
           4571]
 gi|160347838|gb|ABX26512.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus DPC
           4571]
          Length = 503

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 146/388 (37%), Positives = 231/388 (59%), Gaps = 7/388 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F++LGL+  ++ A+  +G+ + TPIQ +TIPL LQ  DV G AQTGTGKTA+F LP+ 
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK- 118
            +I +K +A   + + +I+EPTRELA Q  +   + G++ +  V ++ GG     Q +  
Sbjct: 61  QSIDKKEKAIQAIIQAIIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIRRQIRSL 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +    +L+ TPGR+LDH  RG + ++ +  +V+DEAD MLDMGFI  I++I       +
Sbjct: 121 KQHAPSILVGTPGRLLDHLKRGTIDLDKVNTVVLDEADEMLDMGFIKDIESILKYAKNCK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM   + ++ E F+++P  +++     TA+ I+  FV                
Sbjct: 181 QTLLFSATMPKPILRIGEKFMKDPAIVQIKAKELTADLIDQYFVRAKESEKFDIMCRL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     ++F   K+ V  L   L+ +G++   IHG++ Q  RM +L  F+EG + +
Sbjct: 239 -IDVQGPDLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++ 
Sbjct: 298 LVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGVSVTFVTPNEIGYMR 357

Query: 359 AIEKLIEKKVD--WLNGDLSSLNPPLEK 384
            IE+L +KK+    L  D  +L   L++
Sbjct: 358 TIEQLTKKKMSPIHLPTDDQALRGQLKQ 385


>gi|317477122|ref|ZP_07936363.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906665|gb|EFV28378.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 392

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 149/368 (40%), Positives = 224/368 (60%), Gaps = 3/368 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL ++  ++ A+ + GYV PTPIQ K IP +L   D+ G AQTGTGKTA+F +P++
Sbjct: 21  MTFKDLNITESILKAIEEKGYVNPTPIQAKAIPALLVGKDILGCAQTGTGKTAAFAIPII 80

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  R   +  + LIL PTRELA Q+++  + Y +   +   ++ GG+    Q   L 
Sbjct: 81  QQLQADRNLNKSIKALILTPTRELALQISECIDDYARYTQVCHGVIFGGVNQRTQVNMLH 140

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+LD  N+G + +NNI+  V+DEADRMLDMGFI  I+ +   +P  +QT
Sbjct: 141 KGVDILVATPGRLLDLMNQGYVRLNNIQHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQT 200

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D +  ++ + L+ P +I +   SST + I       Y    K+ + L   + 
Sbjct: 201 LLFSATMPDTIISLTNSLLKQPVKISITPKSSTVDAI---EQTVYFVEKKEKSKLLISIL 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   ++ ++F   K N   +   L K G    AIHGN  Q +R   L NFK G I++M+
Sbjct: 258 HKTQGQSVLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQNARQSALENFKSGKIRVMI 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A +  ++E+ K ++ I
Sbjct: 318 ATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNSGTALSFCSQEERKLVNDI 377

Query: 361 EKLIEKKV 368
           +KL  KK+
Sbjct: 378 QKLTGKKL 385


>gi|295101226|emb|CBK98771.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
           L2-6]
          Length = 648

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 162/454 (35%), Positives = 255/454 (56%), Gaps = 11/454 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  ++ AV +AGY  P+PIQ   IP VL+  D+ G AQTGTGKTA+F LPML
Sbjct: 1   MTFNDLKLSAPLLKAVSEAGYETPSPIQASAIPPVLEGRDLMGCAQTGTGKTAAFALPML 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                    R    R LIL PTRELA Q+ ++F+ YGK   L   ++ GG+    Q + +
Sbjct: 61  DRLSAAAPRRKGAVRALILTPTRELALQIGESFDAYGKYLKLRSTVIFGGVGQAPQVEAI 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+LI  PGR+ D   +G + ++N+E+ V+DEADRMLDMGF+  ++ + + +P  RQ
Sbjct: 121 RKGVDILIACPGRLNDLIGQGHIDLSNLEVFVLDEADRMLDMGFVHDVKKVIAKLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  E+++++   L +P  ++V+  SST E I+           K       + 
Sbjct: 181 NLMFSATMPKEIEQLAAGILHDPAFVKVDPVSSTVERIDQSLYFVEKGNKKLLLPWL-IK 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                ++N ++F   K     +   L KQG +  AIHGN  Q +R+  L  FKEG  +++
Sbjct: 240 NLTPPVQNALVFSRTKHGADKIARDLTKQGITAAAIHGNKSQTARVAALEGFKEGKTRVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI ++ HVFN+D+P   E Y+HRIGRT RAG  G A +  A E+++++  
Sbjct: 300 VATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEMEYLAG 359

Query: 360 IEKLIEKKVDWLNG-DLSSLNPPLE--------KIDIAQHNHARKNNPIPQKSTGFDRRK 410
           IEKL  +K+  ++G     +  P++        K    Q    +   P  +K+      +
Sbjct: 360 IEKLNRRKIPVVSGHPWDGVPAPVKAAPPVRGRKPKAEQPAPEKAEAPKAEKAARPAAPE 419

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQENDADSLG 444
           K  +++ S    +++ KI   ++ + +++  + G
Sbjct: 420 KKSAARPSAAKKQKAPKIEAKEERLMDDNKRTPG 453


>gi|167625497|ref|YP_001675791.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167355519|gb|ABZ78132.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 492

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 169/429 (39%), Positives = 254/429 (59%), Gaps = 6/429 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS +++ AV + GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG     +  R L+L PTRELAAQ+ ++ E YG+   L  A++ GG+    Q  KL
Sbjct: 61  ELLSKGTKAPAKQVRALVLTPTRELAAQIGESVEVYGQFLPLKSAVIFGGVGIGPQITKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD +N+  +  + +E+LV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 NRGVDILVATPGRLLDLYNQRAVSFSQLEVLVLDEADRMLDMGFIHDIKKILAILPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +D+++++++  + NP  I V   ++TA T++               +     
Sbjct: 181 NLMFSATFSDDIRQLAKGLVNNPVEISVTPRNATANTVKQWICPVDHGQKVAVLIEL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  +  ++F   K     L  +LE +G +  AIHGN  Q +R K L++FK G ++++
Sbjct: 238 IKQNDWQQVLVFSRTKHGANRLAKNLEAKGITAAAIHGNKSQGARTKALADFKSGAVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  G A +LV+ E+IK +  
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGHAVSLVSSEEIKLLRD 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI--PQKSTGFDRRKKNYSSQK 417
           IE LI++ ++    +       L + D+   +H +   P     +S G  R +   S   
Sbjct: 358 IELLIKQNLERRPVEGFEPTHSLPETDLTGKSHGQNKGPRNSGNQSRGNGRSRSPNSGGA 417

Query: 418 SHIPLKESE 426
            + P +  +
Sbjct: 418 GNKPPQRRQ 426


>gi|158423990|ref|YP_001525282.1| helicase [Azorhizobium caulinodans ORS 571]
 gi|158330879|dbj|BAF88364.1| helicase [Azorhizobium caulinodans ORS 571]
          Length = 540

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 157/447 (35%), Positives = 242/447 (54%), Gaps = 10/447 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++LGL+  +V A+ +  +V PTPIQ + IP +L   D+ GIAQTGTGKTA+F LP+L 
Sbjct: 3   SFSELGLAEPIVRALTEEKHVTPTPIQAQAIPAILSGKDLIGIAQTGTGKTAAFGLPILD 62

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L +   R+        IL PTREL+ Q+ DN +K+G++  L+  L IGG+P   Q + L
Sbjct: 63  HLSRNPRRIEPRSCRVLILSPTRELSGQILDNLDKFGRHIRLSTTLAIGGVPMGRQIRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG DVL+ TPGR++D      L ++ +E+ V+DEAD+MLDMGF+  I+ I   +P  R 
Sbjct: 123 QRGVDVLVATPGRLMDLVENNALKLDTVEVFVLDEADQMLDMGFVHAIKAIVRRLPHKRH 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +L FSATM   +  ++ + L+NP  + V   + TA+ ++   +          A +   +
Sbjct: 183 SLFFSATMPSAIADLAASMLRNPVTVAVTPVAKTADRVDQRVIFVEKPAK---AKMLAEV 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S + +   ++F   K     +   L + G    AIHGN  Q  R ++L+ F+EG+++ +
Sbjct: 240 LSTEEVDRALVFTRTKHGADKVVQVLARAGHKAEAIHGNKSQNQRDRVLAAFREGSLRTL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV N+D+PN  E+Y+HRIGRT RAGR G A +    E+  ++ +
Sbjct: 300 VATDIAARGIDVTGVSHVINYDLPNVPESYVHRIGRTARAGREGIAISFCDGEERAYLRS 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IEKLI   +     D      P E  D    +  R N    Q       R++    +K  
Sbjct: 360 IEKLIRMTLP--TTDRRGEARPAEAADAVGEDRPRAN---AQPRGERQERREPRGERKEA 414

Query: 420 IPLKESEKISKLQQDIQENDADSLGFR 446
            P +      +  Q  +       G R
Sbjct: 415 RPPRAERPQGERVQGDRPRGERPRGER 441


>gi|293391610|ref|ZP_06635944.1| preprotein translocase subunit SecF [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952144|gb|EFE02263.1| preprotein translocase subunit SecF [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 595

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 137/373 (36%), Positives = 221/373 (59%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL   ++ AV D G+  P+PIQ   IP +L+  DV G+AQTG+GKTA+F LP+L
Sbjct: 1   MTFMDLGLPEFILNAVSDLGFETPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E++ K       + +  G  ++ Q + L
Sbjct: 61  AKIDPNE---KHPQLLVMAPTRELAIQVADACEQFMKYAKGINIVTLYGGQRYDIQLRAL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  RG L +  ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 118 KQGAQVVVGTPGRILDHIRRGTLNLAELKAIVLDEADEMLRMGFIEDVETVMAELPEHHQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+++P+ I++     +A  I       +              
Sbjct: 178 TALFSATMPEPIRRITKRFMKDPQEIKIKATQQSAPDIAQSCWYVHGFRKNDA---LLRF 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 235 LEVEDFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSLDIV 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 295 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 354

Query: 360 IEKLIEKKVDWLN 372
           +E LI+K ++ + 
Sbjct: 355 VEHLIKKNIEEVE 367


>gi|221043088|dbj|BAH13221.1| unnamed protein product [Homo sapiens]
          Length = 765

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 155/465 (33%), Positives = 243/465 (52%), Gaps = 23/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 187 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 246

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 247 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 306

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 307 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 366

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 367 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 426

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 427 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 486

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 487 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 546

Query: 360 IEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K  +                  K++ +  D+ ++     +    Q + A+ N      
Sbjct: 547 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLL 606

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             G +   +    ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 607 EKGKEAVVQE--PERSWFQTKEERKKEKIAKALQEFD---LALRG 646


>gi|189342956|gb|ACD91989.1| DEAD box polypeptide 27 [Homo sapiens]
 gi|313883628|gb|ADR83300.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [synthetic construct]
          Length = 765

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 155/465 (33%), Positives = 243/465 (52%), Gaps = 23/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 187 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 246

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 247 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 306

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 307 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 366

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 367 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 426

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 427 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 486

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 487 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 546

Query: 360 IEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K  +                  K++ +  D+ ++     +    Q + A+ N      
Sbjct: 547 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLL 606

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             G +   +    ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 607 EKGKEAVVQE--PERSWFQTKEERKKEKIAKALQEFD---LALRG 646


>gi|157691224|ref|YP_001485686.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
 gi|157679982|gb|ABV61126.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
          Length = 513

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 149/372 (40%), Positives = 223/372 (59%), Gaps = 6/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  LS  ++ A+   G+ + TPIQ +TIPL LQ  DV G AQTGTGKTA+F +P++
Sbjct: 20  ITFQDFQLSESLMKAINRMGFEEATPIQAETIPLGLQNKDVIGQAQTGTGKTAAFGIPLV 79

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++     I+ PTRELA QV++   K G++    V  + GG     Q + L+
Sbjct: 80  EKIDPASPNIQAI---IIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRSLK 136

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+LDH NR  + + N+E +V+DEAD ML+MGFI  I++I S VP   QT
Sbjct: 137 KNPHIIVGTPGRLLDHINRRTMRLQNVETVVLDEADEMLNMGFIEDIESILSNVPSEHQT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +++++E F+ NP+ ++V     T   I+         + +K       L 
Sbjct: 197 LLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQ---FYLDIHERKKFDTLTRLL 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM  L  FKEG+I ++V
Sbjct: 254 DIQSPELSIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGSIDVLV 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFDVP   E+Y+HRIGRTGRAGR G A T +   +   + AI
Sbjct: 314 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGRTGMAMTFITPREKDMLRAI 373

Query: 361 EKLIEKKVDWLN 372
           E+  ++K+D + 
Sbjct: 374 EQTTKRKMDRMK 385


>gi|114682555|ref|XP_001166506.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 5 [Pan
           troglodytes]
          Length = 796

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 155/465 (33%), Positives = 243/465 (52%), Gaps = 23/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 218 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 277

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 278 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 397

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 398 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 457

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 458 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 517

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 518 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 577

Query: 360 IEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K  +                  K++ +  D+ ++     +    Q + A+ N      
Sbjct: 578 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLL 637

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             G +   +    ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 638 EKGKEAVVQE--PERSWFQTKEERKKEKIAKALQEFD---LALRG 677


>gi|114682561|ref|XP_001166253.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 isoform 1 [Pan
           troglodytes]
          Length = 737

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 155/465 (33%), Positives = 243/465 (52%), Gaps = 23/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 159 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 218

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 219 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 278

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 279 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 338

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 339 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 398

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 399 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 458

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 459 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 518

Query: 360 IEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K  +                  K++ +  D+ ++     +    Q + A+ N      
Sbjct: 519 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLL 578

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             G +   +    ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 579 EKGKEAVVQE--PERSWFQTKEERKKEKIAKALQEFD---LALRG 618


>gi|114682563|ref|XP_001166284.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 isoform 2 [Pan
           troglodytes]
          Length = 745

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 155/465 (33%), Positives = 243/465 (52%), Gaps = 23/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 167 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 226

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 227 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 286

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 287 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 346

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 347 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 406

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 407 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 466

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 467 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 526

Query: 360 IEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K  +                  K++ +  D+ ++     +    Q + A+ N      
Sbjct: 527 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLL 586

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             G +   +    ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 587 EKGKEAVVQE--PERSWFQTKEERKKEKIAKALQEFD---LALRG 626


>gi|114682559|ref|XP_001166388.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 isoform 3 [Pan
           troglodytes]
          Length = 791

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 155/465 (33%), Positives = 243/465 (52%), Gaps = 23/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 218 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 277

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 278 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 397

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 398 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 457

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 458 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 517

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 518 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 577

Query: 360 IEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K  +                  K++ +  D+ ++     +    Q + A+ N      
Sbjct: 578 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLL 637

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             G +   +    ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 638 EKGKEAVVQE--PERSWFQTKEERKKEKIAKALQEFD---LALRG 677


>gi|40225538|gb|AAH11927.2| DDX27 protein [Homo sapiens]
 gi|48257213|gb|AAH16060.2| DDX27 protein [Homo sapiens]
          Length = 767

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 155/465 (33%), Positives = 243/465 (52%), Gaps = 23/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 189 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 248

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 249 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 308

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 309 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 368

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 369 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 428

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 429 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 488

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 489 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 548

Query: 360 IEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K  +                  K++ +  D+ ++     +    Q + A+ N      
Sbjct: 549 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLL 608

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             G +   +    ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 609 EKGKEAVVQE--PERSWFQTKEERKKEKIAKALQEFD---LALRG 648


>gi|32425487|gb|AAH09304.2| DDX27 protein [Homo sapiens]
          Length = 769

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 155/465 (33%), Positives = 243/465 (52%), Gaps = 23/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 191 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 250

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 251 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 310

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 311 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 370

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 371 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 430

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 431 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 490

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 491 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 550

Query: 360 IEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K  +                  K++ +  D+ ++     +    Q + A+ N      
Sbjct: 551 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLL 610

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             G +   +    ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 611 EKGKEAVVQE--PERSWFQTKEERKKEKIAKALQEFD---LALRG 650


>gi|224593278|ref|NP_060365.7| probable ATP-dependent RNA helicase DDX27 [Homo sapiens]
 gi|29427946|sp|Q96GQ7|DDX27_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
           Full=DEAD box protein 27
 gi|55663788|emb|CAH70236.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
 gi|56203613|emb|CAI22427.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
 gi|116497013|gb|AAI26288.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
 gi|119596072|gb|EAW75666.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, isoform CRA_b [Homo
           sapiens]
 gi|120660308|gb|AAI30276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
 gi|219519028|gb|AAI44126.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
 gi|313883552|gb|ADR83262.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [synthetic construct]
          Length = 796

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 155/465 (33%), Positives = 243/465 (52%), Gaps = 23/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 218 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 277

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 278 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 397

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 398 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 457

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 458 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 517

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 518 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 577

Query: 360 IEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K  +                  K++ +  D+ ++     +    Q + A+ N      
Sbjct: 578 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLL 637

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             G +   +    ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 638 EKGKEAVVQE--PERSWFQTKEERKKEKIAKALQEFD---LALRG 677


>gi|220933289|ref|YP_002512188.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219994599|gb|ACL71201.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 602

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 160/468 (34%), Positives = 246/468 (52%), Gaps = 20/468 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL+P V+ A+ D GY  PTPIQ + IP +L   D+ G AQTGTGKTA+F LP L+ 
Sbjct: 11  FDALGLNPAVLKALTDTGYEAPTPIQAEGIPPLLAGRDLLGQAQTGTGKTAAFALPALSR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R +    L+L PTRELA QVA+ F+ Y ++      L I  G P+  Q K+L R
Sbjct: 71  LDLKDNRTQ---VLVLAPTRELAIQVAEAFQTYARHLPGFHVLPIYGGQPYGIQLKQLSR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  RG L ++ +  LV+DEAD ML MGFI  ++ I    P +RQ  
Sbjct: 128 GAQVVVGTPGRVMDHMRRGTLKLDALRTLVLDEADEMLRMGFIDDVEWILEQTPASRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++V+   L+ P  + + + ++TA TI   +      +           + 
Sbjct: 188 LFSATMPEVIRRVAHTHLKEPAEVRIRSATTTATTIRQRYWRVSGLHKLDALTRLLETEP 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   +IF   K   V L   L  +G +  A++G+I Q  R +++   K+G + ++VA
Sbjct: 248 FDAM---LIFVRTKTETVELAERLTARGHACEALNGDIPQNQRERVVERLKKGQLDILVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G+A   VA  + + + AIE
Sbjct: 305 TDVVARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRTGEAILFVAPREQRMLKAIE 364

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK-----KNYSSQ 416
           +   + ++ ++   +         D+     AR    I +     D         +Y  +
Sbjct: 365 RATRQPIEPMHMPTAG--------DVNAQRIARFKERINEALGSDDLEPFLELVTDYQQE 416

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
               PL+ +  +++L Q  +    D          FM    R     +
Sbjct: 417 TGAEPLEIAAALARLAQGKEPLLLDERAPPPPRAEFMPRPERDTGRAE 464


>gi|149177361|ref|ZP_01855966.1| ATP-dependent RNA helicase DeaD [Planctomyces maris DSM 8797]
 gi|148843886|gb|EDL58244.1| ATP-dependent RNA helicase DeaD [Planctomyces maris DSM 8797]
          Length = 606

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 156/464 (33%), Positives = 253/464 (54%), Gaps = 23/464 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L   ++  +++ GY  PTPIQ +TIP +L+  D+ G AQTGTGKTA+F LP+L+
Sbjct: 10  KFTDLELCQPILDVLVELGYDTPTPIQAQTIPHLLEGRDLVGQAQTGTGKTAAFALPLLS 69

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     +R P+ L+L PTRELA QV ++F++YG        L I  G  F+ Q + L+
Sbjct: 70  KIDL---ELRAPQVLVLAPTRELAIQVGESFKEYGSQLKGLQVLPIYGGADFKGQLQPLK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG L ++N+  LV+DEAD ML MGFI  ++ I    P   QT
Sbjct: 127 RGVHVVVGTPGRVMDHMRRGTLKLDNLRCLVLDEADEMLRMGFIDDVEWILEQTPDNHQT 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++ N+L++P+ I V   + TA+TI   +      +          + 
Sbjct: 187 ALFSATMPEAIRRIAGNYLKSPQEITVKDKTRTADTIRQRYWLAKGHHK---LDALTRIL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K     L   LE +GF    ++G+I Q+ R + +   K G + +++
Sbjct: 244 EAEETDGVIIFVRTKSITTELSEKLEARGFLAAPLNGDIPQKQRERTVGRLKAGHVNIVI 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P  +E Y+HRIGRTGRAGR G+A   V+  + + +  I
Sbjct: 304 ATDVAARGLDVDRISHVINYDLPGDSEAYVHRIGRTGRAGRTGEAIMFVSPREQRSLSGI 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+ I+ K++ +        P + +I+  +    +++      S  F++ +K  S  K+  
Sbjct: 364 ERAIKLKIERME------LPSINQINKRRTERFKESVTKAMDSPDFEQFQKLLSEFKTES 417

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
              E +  + L          +  F+G  P F+    + +    
Sbjct: 418 ERSEIDIAAAL----------ACMFQGKRPLFLKETPQQRETSH 451


>gi|323453004|gb|EGB08876.1| Apo-Eif4aiii [Aureococcus anophagefferens]
          Length = 395

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 199/377 (52%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+ +P+ IQ + I  ++   DV   +Q+GTGKTA F + ML 
Sbjct: 23  SFEGMALREDLLRGIYAYGFERPSAIQQRAITPIVAGRDVIAQSQSGTGKTAVFCIAMLQ 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LE      +M     + PTRELA Q        G   N+     IGG       ++L+ 
Sbjct: 83  VLESATNETQMLT---ISPTRELAEQTQKVCLALGDYMNVQCHACIGGKSIGEDIRRLDY 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L   N+++LVIDEAD ML+ GF   I +I   +P + Q +
Sbjct: 140 GVQIVSGTPGRVFDMIKRRNLRTRNLKMLVIDEADEMLNRGFKEQIYDIYRYLPPSTQVV 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+  ++  F+  P R+ V     T E I+  FVA   +  K   L       
Sbjct: 200 LISATMPQEVLDMTRKFMNEPVRVLVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L + + +  F+V A+HG++ QR R  I++ F+ G  ++++A
Sbjct: 258 TLTITQAVIFCNTKRKVDWLANKMREANFTVSAMHGDMPQRERDAIMAEFRGGASRVLIA 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+  RGLD+  V  V  +D+PN  E YIHRIGR+GR GR G A   V  +D++ +  IE
Sbjct: 318 TDIWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDVRILRDIE 377

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 378 QYYSTQIDEMPMNVADL 394


>gi|148380762|ref|YP_001255303.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153932415|ref|YP_001385046.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936759|ref|YP_001388516.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           Hall]
 gi|148290246|emb|CAL84365.1| ATP-dependent RNA helicase (cold-shock dead-box protein)
           [Clostridium botulinum A str. ATCC 3502]
 gi|152928459|gb|ABS33959.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932673|gb|ABS38172.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. Hall]
          Length = 524

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 140/383 (36%), Positives = 224/383 (58%), Gaps = 5/383 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L L+  V+ A+   G+  P+ IQ K+IP+VL+  DV   AQTGTGKT +F  P+++
Sbjct: 5   NFENLNLNEDVLKAIQYMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   + + +  + L+L PTRELA Q+ D  ++  K     V  + GG   E Q K ++ 
Sbjct: 65  AL-CDKEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKS 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGRILDH NR  L +  I+ L++DEAD ML+MGFI  I+ I       +QT+
Sbjct: 124 GVDIVVGTPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K++ N+++           S                 K  A+ +  +  
Sbjct: 184 LFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICR--IID 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  ++ IIFC  K+ V  L  +++ +G++V  +HG++ Q  R+  L  FK+ T+  +VA
Sbjct: 242 SEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ ++ HV N+D+P  AE+Y+HRIGRTGRA + G A++LV   ++  I  IE
Sbjct: 302 TDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIE 361

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
           ++I+ K+     +L +L   LEK
Sbjct: 362 RIIKSKIT--KKELPTLEDILEK 382


>gi|325568403|ref|ZP_08144770.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
           12755]
 gi|325158172|gb|EGC70325.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
           12755]
          Length = 508

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 150/384 (39%), Positives = 227/384 (59%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS +++ +V  AG+ + TPIQ  TIPL L   DV G AQTGTGKTA+F LPML
Sbjct: 1   MKFKDLELSNELLTSVERAGFEEATPIQEATIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++    +++    L++ PTRELA Q  +   + GK+  + V  + GG     Q ++L+
Sbjct: 61  EKIDPANHQLQ---GLVIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIRQLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L +  +E LV+DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPDVRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +   F++ P+ +++     TA+ I+  +V +                
Sbjct: 178 LLFSATMPPAIKNIGVKFMKEPEHVQIKAKEMTADLIDQYYVRSKDYEKFDVMTRLL--- 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              + +  I+F   K+ V  L   LE +G+    IHG++ Q+ RM +L +FK G + ++V
Sbjct: 235 DVQSPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGQLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMSYLHVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E L +K+       ++ + PP EK
Sbjct: 355 ENLTKKR-------MTPMRPPTEK 371


>gi|168216267|ref|ZP_02641892.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens NCTC 8239]
 gi|182381904|gb|EDT79383.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens NCTC 8239]
          Length = 478

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 130/402 (32%), Positives = 224/402 (55%), Gaps = 6/402 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ A+ + GY  P+ +Q  +IP +L+  D+   +QTG+GKTASF +P+ 
Sbjct: 1   MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVC 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +V+    L+L PTRELA QV D     G+   +  A + G  PF  Q ++L+
Sbjct: 61  EKINIEEKKVQC---LVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIRELK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+ DH  RG L ++ +  +VIDEAD+ML MGFI  I++I   +   + T
Sbjct: 118 QRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT + E++++ E +++NP  +EV +     + IE    +      K          
Sbjct: 178 ALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEE---SAIEIEEKNKGKALWKCL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ I+FCN +  V ++   L+ +G +   +HG+++Q+ R++++ NF++   +++V
Sbjct: 235 YAYHPESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ +  +  V N++VP   E+Y+HRIGRTGRAGR GKA T V   + K+++ +
Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           E+ I  ++   +           KI         K +  P+K
Sbjct: 355 EEYIGYEIRKASLPSDDEVKAGRKIFKESQKVQLKESKKPKK 396


>gi|197265494|ref|ZP_03165568.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197243749|gb|EDY26369.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
          Length = 453

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 165/435 (37%), Positives = 242/435 (55%), Gaps = 22/435 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 QMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKIDIAQHNH--------------ARKNNPIPQ 401
             IEKL++K++  +   G         E I   +                  R   P  Q
Sbjct: 358 RDIEKLLKKEIPRITTPGYEPDPLIKAEPIQNGRQQRGGGGRGRGQNQGGAGRSQQPRRQ 417

Query: 402 KSTGFDRRKKNYSSQ 416
            S     + K  + +
Sbjct: 418 DSGAAKAKPKPRTGE 432


>gi|281177933|dbj|BAI54263.1| putative ATP-dependent RNA helicase [Escherichia coli SE15]
          Length = 453

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 156/374 (41%), Positives = 229/374 (61%), Gaps = 6/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL 371
             IEKL++K++  +
Sbjct: 358 RDIEKLLKKEIPRI 371


>gi|261820510|ref|YP_003258616.1| ATP-dependent RNA helicase SrmB [Pectobacterium wasabiae WPP163]
 gi|261604523|gb|ACX87009.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 441

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 133/383 (34%), Positives = 204/383 (53%), Gaps = 4/383 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++L L   ++ A+ D GY +PT IQ + IP  ++  DV G A TGTGKTA+++LP + 
Sbjct: 5   NFSELDLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++  R +   PR LIL PTRELA QVAD    +  + +L +A + GG+ +    +   
Sbjct: 65  HLIDFPRKKSGPPRILILTPTRELAMQVADQARAFAAHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT
Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+  +  K     L N     + +  S  E  +       A   K    L     
Sbjct: 185 MLFSATLEGDAIKDFAERLLNEPIE-IESDPSRRERKKILQWYYRADDLKHKTALLCHQL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   IIF  +++ V  L   L + G + C + G + Q  R + +    +G + ++V
Sbjct: 244 KQPDVTRSIIFVRKRERVHELVSWLHEAGINSCYLEGEMVQAKRNEAIKRMSDGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HVFNFD+P  A+ Y+HRIGRTGRAGR G A + V   D   +  I
Sbjct: 304 ATDIAARGIDIDDVSHVFNFDLPRTADTYLHRIGRTGRAGRKGCAISFVEAHDHLLLGKI 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
            + + + +      +  L P  +
Sbjct: 364 SRYLNEPLK--PRVVEELRPETK 384


>gi|238920509|ref|YP_002934024.1| ATP-dependent RNA helicase RhlE [Edwardsiella ictaluri 93-146]
 gi|238870078|gb|ACR69789.1| ATP-dependent RNA helicase RhlE [Edwardsiella ictaluri 93-146]
          Length = 440

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 165/447 (36%), Positives = 257/447 (57%), Gaps = 11/447 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL  +++ AV + GY +PTPIQ + IP+VLQR D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLCAELLRAVEEQGYREPTPIQQQAIPVVLQRRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L +        R  R LIL PTRELAAQ+ +N  +Y ++  L   ++ GG+    Q  
Sbjct: 61  QLLHQNPKSGKGRRPVRALILTPTRELAAQIGENVREYSRHLPLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++ + L NP  +EV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDEIKALAASLLHNPAEVEVARRNTASELV---TQHVHLVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L      +  ++F   K    +L   L K G S  AIHGN  Q +R + L++FK G I+
Sbjct: 238 FLIGTRDWRQVLVFTRTKYGANHLAEQLNKDGISAAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + +V N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPYVVNYELPNVPEDYVHRIGRTGRAQATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE+L+++ +  +       +P ++   I       + N    + +G  RR +    Q+
Sbjct: 358 RDIERLLKRPIPRMAIAGYEPDPSIKAEPIQNGRQGGRQNSGRTERSGQGRRAE---GQR 414

Query: 418 SHIPLKESEKISKLQQDIQENDADSLG 444
           S  P +   +  + ++  ++    + G
Sbjct: 415 STAPRQGQNR--RPRRPAEQGKGRTEG 439


>gi|213620634|ref|ZP_03373417.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 402

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 160/391 (40%), Positives = 234/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 QMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKID 386
             IEKL++K++  +   G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRITTPGYEPDPSIKAEPIQ 388


>gi|16759741|ref|NP_455358.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29142486|ref|NP_805828.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213163843|ref|ZP_03349553.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213424785|ref|ZP_03357535.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213854569|ref|ZP_03382809.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|25385229|pir||AI0599 probable ATP-dependent RNA helicase rhlE STY0855 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16502034|emb|CAD05267.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29138117|gb|AAO69688.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 455

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 165/437 (37%), Positives = 243/437 (55%), Gaps = 24/437 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 QMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKIDIAQHNH----------------ARKNNPI 399
             IEKL++K++  +   G     +   E I   +                    R   P 
Sbjct: 358 RDIEKLLKKEIPRITTPGYEPDPSIKAEPIQNGRQQRGGGGGGRGRGQNQGGAGRSQQPR 417

Query: 400 PQKSTGFDRRKKNYSSQ 416
            Q S     + K  + +
Sbjct: 418 RQDSGAAKAKPKPRTGE 434


>gi|149908418|ref|ZP_01897081.1| putative ATP-dependent RNA helicase RhlE [Moritella sp. PE36]
 gi|149808581|gb|EDM68516.1| putative ATP-dependent RNA helicase RhlE [Moritella sp. PE36]
          Length = 449

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 173/447 (38%), Positives = 262/447 (58%), Gaps = 12/447 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGLS  ++ AV + GY  P+ IQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTDLGLSAPILKAVAEKGYDTPSAIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            IL +G   R    RTLIL PTRELAAQ+A+N E Y K+  LT  ++ GG+    Q  +L
Sbjct: 61  EILSQGPRPRANQARTLILTPTRELAAQIAENIEVYSKHLRLTSTVVFGGVKINPQMTRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD +N+  +  + +EILV+DEADRMLDMGF+  I+ I +++P  RQ
Sbjct: 121 RRGVDILVATPGRLLDLYNQNAIRFHQLEILVLDEADRMLDMGFLRDIRKILAVLPQKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +D++++++   + +P  I V   ++ A+++       +    KK ALL   L
Sbjct: 181 NLLFSATFSDDIRQLARGLINDPVEISVTPRNAAAKSV---EQWMHPVDKKKKALLLTHL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  ++F   K     L   LE+QG +  AIHGN  Q +R K L+NFK G ++ +
Sbjct: 238 IKENDWKQVLVFTKTKHGANKLTKHLEEQGINAAAIHGNKSQSARTKALANFKSGEVRAL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI  +  V NFD+PN  E+Y+HRIGRTGRAG  G A +LV  +++K + A
Sbjct: 298 IATDIAARGIDIVQLPQVVNFDLPNVPEDYVHRIGRTGRAGSEGTAISLVCHDEMKELVA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+L +K ++ +  D          +D        +     +        +++  + + H
Sbjct: 358 IEQLTQKHLERVVID------GFAPMDSFPTTPGIRPPKEKKPKKDHQDGQRSGENSRGH 411

Query: 420 IPLKESEKISKLQQDIQENDADSLGFR 446
            P  ++ + +  + ++  N + + G R
Sbjct: 412 KPASKNRRHTGPRSEV--NPSANKGNR 436


>gi|169860811|ref|XP_001837040.1| ATP-dependent RNA helicase FAL1 [Coprinopsis cinerea okayama7#130]
 gi|116501762|gb|EAU84657.1| ATP-dependent RNA helicase FAL1 [Coprinopsis cinerea okayama7#130]
          Length = 396

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   ++  +    + KP+ IQ + I  ++Q  DV   AQ+GTGKTA+F + +L 
Sbjct: 24  TFDDLGLKEDLLRGIYAYNFEKPSAIQQRAILPIIQGRDVIAQAQSGTGKTATFSISILQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KLE 
Sbjct: 84  SIDVT---VRETQALVLSPTRELATQIQSVILALGDYMNVQCHACIGGTSIGEDIRKLEY 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 141 GQHVVSGTPGRVFDMIRRRSLRTRNIKMLVLDEADELLNKGFKDQIYDVYRYLPPATQVV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  ++ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 201 LLSATLPYDVLEMTTKFMTDPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDL--YD 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   +    F+V ++HG + Q+ R  I++ F+ GT ++++ 
Sbjct: 259 TLTITQAVIFCNTRRKVDWLTEKMRASNFTVSSMHGEMVQKERDAIMAEFRSGTSRVLIT 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 319 TDVWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTVEDVRILRDIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  + + L
Sbjct: 379 QFYGTQIDEMPVNAAEL 395


>gi|82543242|ref|YP_407189.1| ATP-dependent RNA helicase RhlE [Shigella boydii Sb227]
 gi|81244653|gb|ABB65361.1| putative ATP-dependent RNA helicase [Shigella boydii Sb227]
          Length = 454

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  LQNP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLQNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK   I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSSDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|312881437|ref|ZP_07741232.1| ATP-dependent RNA helicase RhlB [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370919|gb|EFP98376.1| ATP-dependent RNA helicase RhlB [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 433

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 138/425 (32%), Positives = 216/425 (50%), Gaps = 7/425 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L P++V  +++ G+   TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADLNLHPQIVTGLMNKGFNFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 E    +V  PR +I+ PTRELA Q+ ++ +   ++  +  AL  GG  +E Q  
Sbjct: 70  HLLNVPEHTGRKVTQPRAIIMAPTRELAIQIYNDAKPLRESTGIRTALAYGGESYEKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KLE G D+LI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLEDGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +  L    + T   +     F       E        +T        +   ++    L Q
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMHN-PEHVVVEPEQKTGHRIQEELFYPSNEHKMPLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L      V  + G++ Q+ R +IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHKCESIWGHLAADEHRVGLLTGDVPQKKRERILEQFTRGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   ++   ++
Sbjct: 309 ILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSVSFACEDYAVNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPL-EKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            AIE+ IE  +     D S+L P L   + +  H   ++        +G  RR  + S  
Sbjct: 369 PAIEEYIEHTIPVSEYDPSALIPDLPAPLRLRTHRQQQRRTNTGGSRSG-QRRSNHRSRP 427

Query: 417 KSHIP 421
           + H  
Sbjct: 428 RQHKE 432


>gi|270260820|ref|ZP_06189093.1| ATP-dependent RNA helicase [Serratia odorifera 4Rx13]
 gi|270044304|gb|EFA17395.1| ATP-dependent RNA helicase [Serratia odorifera 4Rx13]
          Length = 452

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 160/390 (41%), Positives = 237/390 (60%), Gaps = 8/390 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS +++ AV + GY +PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N E Y K+  L   ++ GG+    Q  
Sbjct: 61  QLLSKHDHPIKGRRPVRALILTPTRELAAQIGENVEAYSKHLRLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++   L NP  +EV   ++ +E I     + +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALANKLLHNPASVEVARRNTASEQI---EQSVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   K  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G I+
Sbjct: 238 QMIGEGDWKQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKI 385
             IE+L+++++    L G     +   E I
Sbjct: 358 RDIERLLKREIPRIALPGYEPDPSIKAEPI 387


>gi|146319228|ref|YP_001198940.1| superfamily II DNA/RNA helicase [Streptococcus suis 05ZYH33]
 gi|146321430|ref|YP_001201141.1| superfamily II DNA/RNA helicase [Streptococcus suis 98HAH33]
 gi|253752268|ref|YP_003025409.1| DEAD box helicase family protein [Streptococcus suis SC84]
 gi|253754094|ref|YP_003027235.1| DEAD box helicase family protein [Streptococcus suis P1/7]
 gi|253756028|ref|YP_003029168.1| DEAD box helicase family protein [Streptococcus suis BM407]
 gi|145690034|gb|ABP90540.1| Superfamily II DNA and RNA helicase [Streptococcus suis 05ZYH33]
 gi|145692236|gb|ABP92741.1| Superfamily II DNA and RNA helicase [Streptococcus suis 98HAH33]
 gi|251816557|emb|CAZ52193.1| DEAD box helicase family protein [Streptococcus suis SC84]
 gi|251818492|emb|CAZ56321.1| DEAD box helicase family protein [Streptococcus suis BM407]
 gi|251820340|emb|CAR46890.1| DEAD box helicase family protein [Streptococcus suis P1/7]
 gi|319758658|gb|ADV70600.1| superfamily II DNA/RNA helicase [Streptococcus suis JS14]
          Length = 514

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 154/418 (36%), Positives = 239/418 (57%), Gaps = 20/418 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  ++ AV  AG+  P+PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTDLQLSEDILLAVEKAGFETPSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++   +LI+ PTRELA Q  +   K+G+   + V  + GG   E Q K L 
Sbjct: 61  NKIDTNNQAIQ---SLIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L ++ +E L++DEAD ML+MGF+  I+ I   VP +RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPESRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + ++++   F++ P+ +++     T   ++  ++                  
Sbjct: 178 LLFSATMPEPIKRIGVKFMKEPEHVKIAAKELTNVNVDQYYLRVKEHEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLAII 354

Query: 361 EKLIEKKVDWLNGD------LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           E L +K++  L          +     L+KI+    +   +NN        FD+ KK+
Sbjct: 355 EDLTKKRMKGLKPATAEEAFEAKKKVALKKIEREMADETIRNN--------FDKFKKD 404


>gi|261250046|ref|ZP_05942623.1| ATP-dependent RNA helicase RhlB [Vibrio orientalis CIP 102891]
 gi|260939550|gb|EEX95535.1| ATP-dependent RNA helicase RhlB [Vibrio orientalis CIP 102891]
          Length = 433

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 140/429 (32%), Positives = 215/429 (50%), Gaps = 10/429 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL P++   +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADLGLHPQITEGLEKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 E    +   PR +I+ PTRELA Q+ ++ E    +  +  AL  GG  ++ Q  
Sbjct: 70  HLLTTSEHEGRKPNQPRAIIMAPTRELAIQIYNDAESLIASTGIKAALAYGGESYDKQLS 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KLE G DVLI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLEDGVDVLIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           ++ L    + T   +     F       E        +T        +   ++    L Q
Sbjct: 190 KERLNMLFSATLSYRVQELAFEHMHN-PEHVVVEPEVKTGHRIQEELFYPSNEHKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R +IL  F +G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHKCESVWGYLAADGHRVGLLTGDVPQKKRERILEQFTKGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   ++   ++
Sbjct: 309 LLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAINL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE+ IE  +   + D S+L       D+      R N P  +++     R  N  S  
Sbjct: 369 PPIEEYIEHTIPVSDYDPSALIE-----DLPAPIRMRSNRPQQRRTNTGGSRSGNRRSNH 423

Query: 418 SHIPLKESE 426
              P ++ +
Sbjct: 424 RSRPRQQKD 432


>gi|153938870|ref|YP_001392080.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum F str.
           Langeland]
 gi|152934766|gb|ABS40264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. Langeland]
 gi|295320089|gb|ADG00467.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. 230613]
          Length = 524

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 138/383 (36%), Positives = 223/383 (58%), Gaps = 5/383 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L L+  V+ A+   G+  P+ IQ K+IP+VL+  DV   AQTGTGKT +F  P+++
Sbjct: 5   NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   + + +  + L+L PTRELA Q+ D  ++  K     V  + GG   E Q K ++ 
Sbjct: 65  AL-CDKEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKS 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR+LDH NR  L +  I+ L++DEAD ML+MGFI  I+ I       +QT+
Sbjct: 124 GVDIVVGTPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K++ N+++           S                 K  A+ +  +  
Sbjct: 184 LFSATMPAPIKKLALNYMKKDVEHIAIVKKSLTVDKIAQHYFAVKNKDKLEAICR--IID 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  ++ IIFC  K+ V  L  +++ +G++V  +HG++ Q  R+  L  FK+ T+  +VA
Sbjct: 242 SEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ ++ HV N+D+P  AE+Y+HRIGRTGRA + G A++LV   ++  I  IE
Sbjct: 302 TDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIE 361

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
           ++ + K+     +L +L   LEK
Sbjct: 362 RITKSKIT--KKELPTLEDILEK 382


>gi|127511465|ref|YP_001092662.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126636760|gb|ABO22403.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 599

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 142/372 (38%), Positives = 218/372 (58%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ A+ + GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L 
Sbjct: 7   TFRELGLSEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++  R    +P+ L+L PTRELA QVA+ F  Y K       L I  G     Q   L 
Sbjct: 67  AIDPNR---NVPQILVLAPTRELAVQVAEAFGSYSKFMKGLHVLPIYGGQSMHQQLNALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++DH  RG L +  +  LV+DEAD ML MGFI  I+ I    P  RQ 
Sbjct: 124 RGPQIVVGTPGRVMDHMRRGTLKLETLNALVLDEADEMLKMGFIDDIEWILEHTPQERQL 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +++++V+  +LQ P  I +    +T E+IE  FV        +  +    ++
Sbjct: 184 ALFSATMPEQIKRVANKYLQTPVHISIAASHTTVESIEQRFVQVSQHNKLEALVRVLEVE 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + +   IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++
Sbjct: 244 NTEGI---IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +GHV N+D+P   E Y+HRIGRTGRAGR G A   V   +++ +  I
Sbjct: 301 ATDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI 360

Query: 361 EKLIEKKVDWLN 372
           E+  + ++  +N
Sbjct: 361 ERATKSRISPMN 372


>gi|56756857|gb|AAW26600.1| SJCHGC06283 protein [Schistosoma japonicum]
          Length = 402

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+ +P+ IQ + I  +++  DV   AQ+GTGKTA+  + +L 
Sbjct: 30  SFDSMCLRDDLLRGIYAYGFERPSAIQQRAIKQIIKGRDVIAQAQSGTGKTATLGISILQ 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+      +    L+L PTRELA+Q+       G   N+      GG       +KL+ 
Sbjct: 90  MLDTQLRETQA---LVLSPTRELASQIQKVILALGDYTNVHCHACYGGTNIGEDIRKLDY 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    +++ V+DEAD MLD GF   I ++   +P   Q +
Sbjct: 147 GQHVISGTPGRVFDMIRRRSLRTRAVKLFVLDEADEMLDKGFKEQIYDVYRYLPPGTQVV 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+ +++  F+ NP RI V     T E I+  FVA   +  K   L       
Sbjct: 207 LLSATMPHEILEMTSKFMTNPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + K  F+V ++HG++ Q+ R KI+ +F+ G  ++++ 
Sbjct: 265 TLTVTQSVIFCNTKRKVAWLTEKMLKNNFTVASMHGDMVQKEREKIMKDFRAGDSRVLIT 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +  IE
Sbjct: 325 TDLWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKTDDIKILRDIE 384

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  ++S L
Sbjct: 385 QYYSTQIDEMPMNVSDL 401


>gi|56418761|ref|YP_146079.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
 gi|81675946|sp|Q5L3G9|CSHA_GEOKA RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|56378603|dbj|BAD74511.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
          Length = 467

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 157/382 (41%), Positives = 232/382 (60%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS +V+ A+   G+ + TPIQ KTIPL LQ  DV G AQTGTGKTA+F +P++ 
Sbjct: 3   TFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +    + V+    L++ PTRELA QV++   K G    + V  + GG   E Q + L++
Sbjct: 63  KVNVKNSAVQA---LVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGRI+DH NRG L + ++  +V+DEAD ML+MGFI  I+ I S VP  RQTL
Sbjct: 120 HPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+  P+ ++V     T   I+         + KK   +   L  
Sbjct: 180 LFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQ---YYLEVHEKKKFDILTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G++   IHG++ Q  R+ +L  FKEG I+++VA
Sbjct: 237 IQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   +I  +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++K++ +     +L+  LE
Sbjct: 357 RTTKRKMERMKP--PTLDEALE 376


>gi|47209111|emb|CAF90069.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 415

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 131/382 (34%), Positives = 207/382 (54%), Gaps = 7/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 35  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ 94

Query: 62  ILEKGR-----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L+         +VR  + LIL PTRELA Q+       G   N+     IGG       
Sbjct: 95  CLDIQVSGSTLVQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDI 154

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +KL+ G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P 
Sbjct: 155 RKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP 214

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q +L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L  
Sbjct: 215 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 274

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                  T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  
Sbjct: 275 L--YDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGAS 332

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ 
Sbjct: 333 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRI 392

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
           +  IE+    ++D +  +++ L
Sbjct: 393 LRDIEQYYSTQIDEMPMNVADL 414


>gi|238917309|ref|YP_002930826.1| ATP-dependent RNA helicase DeaD [Eubacterium eligens ATCC 27750]
 gi|238872669|gb|ACR72379.1| ATP-dependent RNA helicase DeaD [Eubacterium eligens ATCC 27750]
          Length = 571

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 130/369 (35%), Positives = 215/369 (58%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +  +++ AV D G+ + +PIQ + IP VL+  DV G AQTGTGKTA++ +PML
Sbjct: 1   MKFDELNIDERILRAVEDMGFEETSPIQTQAIPAVLEGIDVIGQAQTGTGKTAAYSIPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             +      V+ P+ ++L PTRELA QVA+   K  K  +    L +  G     Q K L
Sbjct: 61  QKI---NPDVKKPQAIVLCPTRELAVQVAEEIRKLAKYMSDIKVLPVYGGQEIVRQIKSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  +++ TPGR++DH  R  +  +++ ++++DEAD MLDMGF   ++ I +  P  RQ
Sbjct: 118 KAGVQIIVGTPGRVMDHMRRKTVKFDSVSMVILDEADEMLDMGFREDMETILTETPEERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + +++  F ++ + I+V     T   I+  +        K    +   L
Sbjct: 178 TVLFSATMPKPIMEIARKFQKDARIIKVVRKELTVSNIDQFYYEVRP---KNKTEILSRL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  ++FCN K+ V  L   L+ +G+    IHG++ Q+ R +++ +F+ G  +++
Sbjct: 235 IDIYNPKLSVVFCNTKRQVDELISELKGRGYFADGIHGDMKQQQRDRVMDDFRSGKTEIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+  V  VFN+D+P   E Y+HRIGRTGRAG+ G A + ++  ++  +  
Sbjct: 295 IATDVAARGIDVDGVDIVFNYDLPQDEEYYVHRIGRTGRAGKSGLALSFISGREVYKLKD 354

Query: 360 IEKLIEKKV 368
           IE+  + K+
Sbjct: 355 IERYCKTKI 363


>gi|126290158|ref|XP_001370541.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Monodelphis domestica]
          Length = 1175

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 141/448 (31%), Positives = 231/448 (51%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 517 TWVQCGISMKILNSLKKHGYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 576

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 577 HIMDQRALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 636

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 637 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 696

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S               +   K   L 
Sbjct: 697 DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSD--VEQQVIVIEEENKFLKLL 754

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT 
Sbjct: 755 ELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTC 814

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 815 KLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARY 874

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     +  DL  L    +       +  +    I +KS+GF  +   +   
Sbjct: 875 AGDIIKALELSGTAVPHDLEKLWSDFK-------DQQKAEGKIIKKSSGFSGKGFKFDET 927

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +   E +K+ K    +Q++D +   
Sbjct: 928 EQAL-ANERKKLQKAALGLQDSDDEDTA 954


>gi|255036249|ref|YP_003086870.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254949005|gb|ACT93705.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 446

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 153/444 (34%), Positives = 231/444 (52%), Gaps = 9/444 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L+  ++ A+ +AGY  PTPIQ K   +++   DVCGIAQTGTGKT +++LP L
Sbjct: 2   MTFEDLNLTKPLLKALSEAGYTTPTPIQHKVFSVMMSGKDVCGIAQTGTGKTFAYLLPTL 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +E  + R+  P+ L+L PTREL  QV +   K      L V  + GG   + Q  +L 
Sbjct: 62  RQIEYAKDRL--PQLLVLVPTRELVVQVVEEVRKLAAYTTLQVVGVYGGGNIKVQMAELH 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GADV++ TPGR+ D    G L   +++ LVIDE D ML++GF   ++NI  L+P  RQ 
Sbjct: 120 EGADVVVATPGRLFDLAMNGSLKTKSVKKLVIDEVDEMLNLGFRTQLKNILDLLPQRRQN 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+T E++ + + +  +P RIE     +  + IE         Y+K   L + L Q
Sbjct: 180 LLFSATITQEVEALMKAYFNDPVRIEAAPVGTPLDNIEQQAYYVPNFYTKVNLLDKLLEQ 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  K  I    +K                +  IH N DQ  R   +  F  G  +L++
Sbjct: 240 HEEMNKVLIFVATKKLADQLYGQLELGYLDRIGVIHSNKDQNHRFNTIRQFHAGNYRLLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD+ +V HVFNFD+P   ENYIHRIGRTGRA R G A + +++ +    + I
Sbjct: 300 ATDIIARGLDVAEVSHVFNFDIPEIPENYIHRIGRTGRADRKGIAISFISEREKPFQEQI 359

Query: 361 EKLIEKKVDWLN----GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS- 415
           E L++ ++  L       +S +  P E+  I   N   K          F  +K      
Sbjct: 360 EALMDFEIPVLPLPEDLKISEVLTPDEEPKIFMKNIELKRPKREDVGAAFHEKKAKNQKV 419

Query: 416 --QKSHIPLKESEKISKLQQDIQE 437
             ++ H   K ++    +++  ++
Sbjct: 420 NVRRDHAKEKMAKYGRPIKRSGKK 443


>gi|153874150|ref|ZP_02002476.1| ATP-dependent RNA helicase RhlE [Beggiatoa sp. PS]
 gi|152069386|gb|EDN67524.1| ATP-dependent RNA helicase RhlE [Beggiatoa sp. PS]
          Length = 441

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 157/418 (37%), Positives = 230/418 (55%), Gaps = 14/418 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L P ++ A+   GY  PT +Q + IP VL   D+   A TGTGKTA+FVLP L
Sbjct: 1   MSFEEFNLHPIILKAIQQCGYTTPTGVQAEAIPKVLNGSDLIASANTGTGKTAAFVLPAL 60

Query: 61  TILEKGRARVR----MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L     RV+     P  L+L PTRELA Q++     YGKN       L+GG+P+E Q 
Sbjct: 61  QRLTNKEHRVKKQNGKPSVLVLTPTRELANQISQAIRNYGKNLRFFSTNLVGGMPYEPQL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L R  D+++ TPGR+LD   R  + ++ + +LV+DEADRMLDMGF+  +  I S  P 
Sbjct: 121 RALSRPIDIVVATPGRLLDLVERRNIDLSGVNMLVLDEADRMLDMGFVDEVNKIASFTPE 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           TRQTLLFSAT  + +  ++   L++P+RI+V +  +     +   +A      K    L 
Sbjct: 181 TRQTLLFSATWDNTMASLARRLLKDPERIQVESQVTQNNIEQRLHIADDF---KHKNRLL 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             +   + +   IIF   K+   +L   L+ QG S  A+HG++ Q +R + L N + G +
Sbjct: 238 LHVLDNEELTQAIIFSATKQGANDLAQELKAQGHSAAALHGDMKQGARNRTLMNLRRGKL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+D+AARG+D+  V HV NFD+P  AE+Y+HRIGRTGRAG  G A +    +D +H
Sbjct: 298 RLLVATDVAARGIDVTTVTHVINFDLPRFAEDYVHRIGRTGRAGAAGTAISFALPDDARH 357

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKI-DIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           +  IE+    +V  +      + P LE    + Q    +K       S    R+K  Y
Sbjct: 358 LARIERYTGIQVPQV------IIPGLEPTRSLYQRRTQKKRQYRGGYSAAAPRKKSGY 409


>gi|304408600|ref|ZP_07390221.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307305428|ref|ZP_07585176.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304352421|gb|EFM16818.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306911731|gb|EFN42156.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 467

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 158/432 (36%), Positives = 242/432 (56%), Gaps = 6/432 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F+ LGLS  ++ A+ + GY +PTPIQ K IP++L+  ++   AQTGTGKTASFVLP+ 
Sbjct: 1   MPFSQLGLSDPILRAITELGYSQPTPIQEKAIPVILKGKNLLAGAQTGTGKTASFVLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +  + R +  R LIL PTRELA QV DN  KY K   LT   + GG+    Q ++L
Sbjct: 61  QMFADMPKIRAKRVRALILTPTRELAVQVEDNIAKYAKYLPLTSMAMYGGVDAAPQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + I +LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDEISVLVLDEADRMLDMGFIEDINKIIERLPTERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++ +++  ++NP  IE+   S+ A  I+   +                 
Sbjct: 181 NLLFSATLSKQVRFLAKTAVENPVEIEIARDSANAPQIDQWLITVDKDKKSALLSKL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  +IF   K+    L   LEK+G +  AIH    Q  R ++L +FK G ++ +
Sbjct: 238 ITEQAWEQALIFIQTKQGAAKLVSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGKLRFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +A+RG+DI  +  V N+D+P+ A++YIHRIGRTGRAG  G+A + V+K+D +++ A
Sbjct: 298 VATGVASRGIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGACGEAISFVSKDDFRNLCA 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE+ ++  +    + G + +   P+  +D    N   K            R  K  S + 
Sbjct: 358 IERRLDHIIVRKEIEGFVPNKEVPVSILDFVPKNTTPKTFKARAPDARTSRPAKEGSFET 417

Query: 418 SHIPLKESEKIS 429
           +H     S K  
Sbjct: 418 AHAKKHRSAKSK 429


>gi|254805163|ref|YP_003083384.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha14]
 gi|254668705|emb|CBA06474.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha14]
          Length = 462

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 161/456 (35%), Positives = 240/456 (52%), Gaps = 16/456 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QRLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLMDLMQSGKVDFGRLEVLILDEADRMLDMGFIDDIETIVEATPTDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    ++P+ IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK I +K+  L  +      P  K   A      K     +KS G   R+ ++   K 
Sbjct: 360 KIEKYINRKLPELTIE---GMEPTRKRKSAGGKPKGKGGWGDRKSGG---RRGDHKPGKE 413

Query: 419 HIPLK---ESEKISKLQQDIQENDADSLGFRGNMPA 451
               K   ES K    ++D  +   +  GF+G   A
Sbjct: 414 GFGGKTRGESFKKEGFKKDGFKKTGE--GFKGKRKA 447


>gi|294497056|ref|YP_003560756.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
 gi|294346993|gb|ADE67322.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
          Length = 503

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 155/392 (39%), Positives = 228/392 (58%), Gaps = 15/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS ++  AV   G+ + TPIQ +TIPL L+ HD+ G AQTGTGKTA+F +P++  
Sbjct: 4   FQDLGLSQQLNKAVSKMGFEEATPIQSETIPLALEGHDLIGQAQTGTGKTAAFGIPLIEK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     V   + LI+ PTRELA QV++   K G+   + V  + GG     Q + L++ 
Sbjct: 64  VDVN---VDAIQGLIIAPTRELAVQVSEELYKIGQTKRVRVLSIYGGQDISRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH NR  L + ++  +++DEAD ML+MGFI  I+ I S VP   QTLL
Sbjct: 121 PHIIVGTPGRMLDHINRRTLRLQDVHTVILDEADEMLNMGFIEDIEKILSNVPENHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +++++E F+  PK ++V     T   I            K+   +   L   
Sbjct: 181 FSATMPTPIRRIAEKFMNEPKVVKVKAKEVTMPNI---TQYYLEVQEKRKFDILTRLLDM 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  IIF   K+ V  L  +L  +G+S   IHG++ Q  R+ +L  FKEG+I ++VA+
Sbjct: 238 QSPELAIIFGRTKRRVDELSEALNMRGYSAQGIHGDLTQSKRLSVLRQFKEGSIDVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   +   +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGAAMTFVTPRETGQLHNIER 357

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
             ++K++        L PP   +D A     R
Sbjct: 358 TTKRKMER-------LTPP--TLDEAMEGQQR 380


>gi|293409172|ref|ZP_06652748.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291469640|gb|EFF12124.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 454

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 158/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP V++  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVMEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|218704175|ref|YP_002411694.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMN026]
 gi|293404097|ref|ZP_06648091.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1412]
 gi|298379878|ref|ZP_06989483.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1302]
 gi|300898284|ref|ZP_07116635.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 198-1]
 gi|331662152|ref|ZP_08363075.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA143]
 gi|218431272|emb|CAR12150.1| RNA helicase [Escherichia coli UMN026]
 gi|291428683|gb|EFF01708.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1412]
 gi|298279576|gb|EFI21084.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1302]
 gi|300358073|gb|EFJ73943.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 198-1]
 gi|331060574|gb|EGI32538.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA143]
          Length = 454

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 158/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP V++  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVMEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|322514213|ref|ZP_08067275.1| superfamily II helicase [Actinobacillus ureae ATCC 25976]
 gi|322119906|gb|EFX91915.1| superfamily II helicase [Actinobacillus ureae ATCC 25976]
          Length = 607

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 139/372 (37%), Positives = 227/372 (61%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   ++ AV + G+V P+PIQ +TIP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 6   LTFADLGLPQSILDAVNEIGFVNPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++  +     P+ L++ PTRELA QVAD  E++ KN   + V  + GG  ++ Q + L
Sbjct: 66  AQIDPTQ---HHPQMLVMAPTRELAIQVADACEQFTKNMKGVRVVTVYGGQRYDIQLRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G+ V++ TPGRILDH  RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 KQGSQVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+++P+ +++     +A  I   +                  
Sbjct: 183 TALFSATMPEPIRRITRRFMKDPQEVKIQATQRSAPDITQSYWLVNGFRKNDA---LLRF 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++    E+ G+   A++G++ Q++R + L+  K G + ++
Sbjct: 240 LEVEEFDAAIIFTRTKTGTIDITELCERNGYRAAALNGDMTQQAREQTLAKLKSGRLDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V NFD+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 300 VATDVAARGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359

Query: 360 IEKLIEKKVDWL 371
           IE L++K +D +
Sbjct: 360 IEHLMKKPIDEV 371


>gi|168183134|ref|ZP_02617798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|182673701|gb|EDT85662.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
          Length = 524

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 139/383 (36%), Positives = 224/383 (58%), Gaps = 5/383 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L L+  V+ A+   G+  P+ IQ K+IP+VL+  DV   AQTGTGKT +F  P+++
Sbjct: 5   NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   + + +  + L+L PTRELA Q+ D  ++  K     V  + GG   E Q K ++ 
Sbjct: 65  AL-CDKEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKS 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR+LDH NR  L +  I+ L++DEAD ML+MGFI  I+ I       +QT+
Sbjct: 124 GVDIVVGTPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++K++ N+++           S                 K  AL +  +  
Sbjct: 184 LFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAVKNKDKLEALCR--IID 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  ++ IIFC  K+ V  L  +++ +G++V  +HG++ Q  R+  L  FK+ T+  +VA
Sbjct: 242 SEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ ++ HV N+D+P  AE+Y+HRIGRTGRA + G A++LV   ++  I  IE
Sbjct: 302 TDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIE 361

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
           ++ + K+     +L +L   LEK
Sbjct: 362 RITKSKIK--KKELPTLEDILEK 382


>gi|163786067|ref|ZP_02180515.1| putative ATP-dependent RNA helicase RhlE [Flavobacteriales
           bacterium ALC-1]
 gi|159877927|gb|EDP71983.1| putative ATP-dependent RNA helicase RhlE [Flavobacteriales
           bacterium ALC-1]
          Length = 436

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 160/411 (38%), Positives = 239/411 (58%), Gaps = 7/411 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+   GY  P+PIQ K IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFKSLGLSEPLLRAISKKGYETPSPIQAKAIPPVLEEKDVLASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +   +   P    IL PTRELAAQV  N ++Y +  N+   ++ GG+  + Q   +
Sbjct: 61  HLLSQRPVQKHRPIRALILTPTRELAAQVHTNVKEYSEFLNIKSTVIFGGVNQKPQVATI 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DVL+ TPGR++D  ++G L +  +EI V+DEADRMLDMGF+  I+ +  L+P  RQ
Sbjct: 121 RKGVDVLVATPGRLIDLESQGLLSLKRVEIFVLDEADRMLDMGFLRDIERVMKLMPDKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT + +++K++ + L NP ++E    ++  E I+               +     
Sbjct: 181 NLMFSATFSKDIKKLAYSILNNPVKVEATPENTAVEVIDQKVYRVAKGKKTGLIIKL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+   K  ++F   K     LC  +   G +  AIHGN  Q +R K L+ FK G ++++
Sbjct: 238 ISEGNWKQVLVFTRTKHGANKLCKKMISAGITAAAIHGNKSQGARTKALAGFKSGKVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + HV N+++PN +E+Y+HRIGRTGRAG  G+A +LV+ ++  ++ +
Sbjct: 298 VATDIAARGLDIPLLPHVVNYEIPNISEDYVHRIGRTGRAGASGEAISLVSADETTYLRS 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           IEKLI+ K+  + + G     N   E I   Q N  R       K++   R
Sbjct: 358 IEKLIDMKIEVEVVEGFEPDPNASTEPIKPGQ-NRNRGRGGNQNKNSNSRR 407


>gi|310641357|ref|YP_003946115.1| dead/deah box helicase domain-containing protein [Paenibacillus
           polymyxa SC2]
 gi|309246307|gb|ADO55874.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
           polymyxa SC2]
          Length = 525

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 151/402 (37%), Positives = 237/402 (58%), Gaps = 11/402 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+  L PKV+ A+ + G+ + TPIQ K+IP+ LQ  D+ G AQTGTGKTA+F +PM+ 
Sbjct: 3   TFAEFDLEPKVIQAITELGFEEATPIQSKSIPIALQGKDMIGQAQTGTGKTAAFGIPMIN 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + K   ++R    LI+ PTRELA QVA+  EK  +   L    + GG     Q + L++
Sbjct: 63  KISKNDEKIRA---LIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH NR  + + ++  +V+DEAD MLDMGF+  IQ+I   VP  RQT+
Sbjct: 120 KPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQTM 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +++++E FL++P+ + V     +A  I     A      ++       L  
Sbjct: 180 LFSATMPPNIKRLAEQFLKDPEHVSVIPKQVSAPLI---DQAYIEVPERQKFEALSRLID 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            ++ +  I+F   K+ V  L  +L+K+G+S   +HG++ Q  R  ++  F++G+I ++VA
Sbjct: 237 MESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HV NFD+P   E+Y+HRIGRTGRAG+ G+A++ V   +I H+  IE
Sbjct: 297 TDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHFIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           ++   ++         L    E ++  Q   A +   + +K 
Sbjct: 357 RVTRHRIPRKP-----LPTLAEALEGKQRIIAERLLEVVEKG 393


>gi|261418549|ref|YP_003252231.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC61]
 gi|297528577|ref|YP_003669852.1| DEAD/DEAH box helicase [Geobacillus sp. C56-T3]
 gi|319765363|ref|YP_004130864.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC52]
 gi|261375006|gb|ACX77749.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC61]
 gi|297251829|gb|ADI25275.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. C56-T3]
 gi|317110229|gb|ADU92721.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC52]
          Length = 467

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 156/382 (40%), Positives = 232/382 (60%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS +V+ A+   G+ + TPIQ KTIPL LQ  DV G AQTGTGKTA+F +P++ 
Sbjct: 3   TFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +    + L++ PTRELA QV++   K G    + V  + GG   E Q + L++
Sbjct: 63  KVDV---KNGAIQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGRI+DH NRG L + ++  +V+DEAD ML+MGFI  I+ I S VP  RQTL
Sbjct: 120 HPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+  P+ ++V     T   I+         + KK   +   L  
Sbjct: 180 LFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQ---YYLEVHEKKKFDILTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G++   IHG++ Q  R+ +L  FKEG I+++VA
Sbjct: 237 IQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   +I  +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++K++ +     +L+  LE
Sbjct: 357 RTTKRKMERMKP--PTLDEALE 376


>gi|156087226|ref|XP_001611020.1| eukaryotic initiation factor 4A-3 (eIF4A-3)  [Babesia bovis T2Bo]
 gi|154798273|gb|EDO07452.1| eukaryotic initiation factor 4A-3 (eIF4A-3) , putative [Babesia
           bovis]
          Length = 395

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 199/377 (52%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL  +++  +   G+ KP+ +Q + I  +L   DV   +Q+GTGKT  F L  L 
Sbjct: 23  SFEGLGLREEILKGIFSYGFDKPSAVQQRAIKPILDGRDVIIQSQSGTGKTCVFCLGALQ 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I+     + ++   L+L PTRELA Q        G   N+ V   IGG       K LE 
Sbjct: 83  IVNPASKQTQV---LLLSPTRELAEQSQKVCLALGDYCNVEVHCCIGGKRVSDDIKALES 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+        L   NI+ +++DEAD ML+ GF   + +I   +P T Q +
Sbjct: 140 GVHIVSGTPGRVNHMIAERHLNTRNIKQMILDEADEMLNRGFKDQVYSIYRYLPPTLQVI 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++E F+ NP R+ V     T + I+  FVA   +  K   L       
Sbjct: 200 LVSATLPQEVVEITEKFMNNPFRVLVKRDELTLDGIKQFFVAVEKEQWKFDTLCDL--YE 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   ++FCN ++ V  L   ++   F+VC +HG + Q+ R  I+  F+ G  +++++
Sbjct: 258 SLIITQAVVFCNTREKVDWLAKRMQDSNFTVCKMHGEMSQKERNDIMQRFRRGESRVLIS 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+  RGLD+  V  V N+D+PN  ENYIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 318 TDIWGRGLDVQQVSLVVNYDLPNSRENYIHRIGRSGRYGRKGVAINFVKDDDIRILRDIE 377

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 378 QYYSTQIDEMPMNIAEL 394


>gi|253575100|ref|ZP_04852439.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845556|gb|EES73565.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 410

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 150/403 (37%), Positives = 232/403 (57%), Gaps = 9/403 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           M F +L L P ++ A+    Y  PTPIQ + IP +L   D+ G AQTGTGKTA+F +P  
Sbjct: 1   MQFKELNLIPSILKALEQENYTAPTPIQQQAIPPILSGQDLLGCAQTGTGKTAAFAIPTL 60

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L      RA  R  R L++ PTRELA Q+ +NF  YGK   L  A++ GG+  + Q  
Sbjct: 61  QLLHKDGAPRAGRRNIRALVITPTRELALQIYENFCAYGKYLPLKCAVIFGGVSQKPQEA 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+L+ TPGR+ D   +  + + N+E+L++DEADRMLDMGFI  ++ I +  P  
Sbjct: 121 ALQKGVDILVATPGRLNDLMQQKLIDLKNVELLILDEADRMLDMGFIHDVKKIIAKTPSQ 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM D + +++++ L+NP ++E+   SST +TI            +   +   
Sbjct: 181 RQTLLFSATMPDAIAQMADSILRNPVKVEITPVSSTVDTIGQYLYYVDKGNKRDLLIHLL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                 ++++ I+F   K     L   L K   S  AIHG+  Q +R   L +FK  T++
Sbjct: 241 ---KDPSIESAIVFTRTKHGADRLVRHLTKAQVSAKAIHGDKSQGARQTALQDFKNRTLR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++ HV N+++PN  E Y+HRIGRTGRAG+ G A +    ++  ++
Sbjct: 298 VLVATDIAARGIDIDELSHVINYELPNIPETYVHRIGRTGRAGQSGVAISFCDFDEKPYL 357

Query: 358 DAIEKLIEKKVDWL---NGDLSSLNPPLEKIDIAQHNHARKNN 397
             IEKLI K++  +      +       + +  A+ +  R  +
Sbjct: 358 ADIEKLIGKRIPVIKEHPYPMQQTALAPKPVQPARESKKRTES 400


>gi|160946735|ref|ZP_02093938.1| hypothetical protein PEPMIC_00693 [Parvimonas micra ATCC 33270]
 gi|158447119|gb|EDP24114.1| hypothetical protein PEPMIC_00693 [Parvimonas micra ATCC 33270]
          Length = 580

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 139/385 (36%), Positives = 219/385 (56%), Gaps = 8/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  LS +V+ AV++ G+ +P+PIQ + IP +L   D+ G AQTGTGKTASF +P++ 
Sbjct: 4   NFNDFNLSKEVLKAVVEMGFEEPSPIQKQAIPTMLNNEDIIGQAQTGTGKTASFGIPIVE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + K     +  + ++L PTREL+ QVA+   K  K   +TV  + GG P E Q + L+ 
Sbjct: 64  KVNKN---SKTTQAMVLCPTRELSIQVAEEISKLAKYKGVTVVPIYGGQPIERQIRSLKM 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  R  L   NI+  V+DEAD M DMGF   I+ I   +P+ RQT 
Sbjct: 121 GVQVIVGTPGRVIDHIKRKTLKTENIKTFVLDEADEMFDMGFREDIEKIIGFLPYERQTT 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E+   +  +   P+ I+V     T   +   + A           +   +  
Sbjct: 181 FFSATMDHEMMDFAARYQSEPRLIKVVPKELTVPKVTQYYFALKHNMK---LEILSRILD 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  ++FCN KK V +L   L+ +G+    +HG++ Q  R  +++ F+  TI ++VA
Sbjct: 238 VQNPKLTVVFCNTKKMVDDLTAGLQSRGYFADGLHGDLKQIQRDGVMNKFRNSTIDILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  V N+D+P   E Y+HRIGRT RAGR G A + V+  ++  +  I+
Sbjct: 298 TDVAARGIDVDDVDLVINYDMPQDVEYYVHRIGRTARAGREGTAISFVSPREMNTLSQIQ 357

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKID 386
           K  + K++    D+ +L   +++ +
Sbjct: 358 KYTKTKIE--KRDMPTLKDLIKRHE 380


>gi|22536941|ref|NP_687792.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae
           2603V/R]
 gi|22533794|gb|AAM99664.1|AE014227_8 ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 2603V/R]
          Length = 528

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 155/394 (39%), Positives = 233/394 (59%), Gaps = 7/394 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ AV  AG+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L 
Sbjct: 61  NKIHT---EDNTIQALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGR+LD   R  L +N+IE L++DEAD ML+MGF+  I+ I S VP TRQT
Sbjct: 118 SGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T   ++  +V                  
Sbjct: 178 LLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLTII 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           E L +K++  +    +S     +K  +A    AR
Sbjct: 355 ENLTKKRMTGMKPATASEAFQAKK-KVALKRIAR 387


>gi|25010852|ref|NP_735247.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae NEM316]
 gi|76786821|ref|YP_329524.1| DEAD/DEAH box helicase [Streptococcus agalactiae A909]
 gi|76799328|ref|ZP_00781491.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 18RS21]
 gi|77406817|ref|ZP_00783849.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae H36B]
 gi|77411327|ref|ZP_00787675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae CJB111]
 gi|23095231|emb|CAD46441.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76561878|gb|ABA44462.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae A909]
 gi|76585318|gb|EAO61913.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 18RS21]
 gi|77162587|gb|EAO73550.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae CJB111]
 gi|77174571|gb|EAO77408.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae H36B]
          Length = 528

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 155/394 (39%), Positives = 233/394 (59%), Gaps = 7/394 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ AV  AG+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L 
Sbjct: 61  NKIHT---EDNTIQALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGR+LD   R  L +N+IE L++DEAD ML+MGF+  I+ I S VP TRQT
Sbjct: 118 SGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T   ++  +V                  
Sbjct: 178 LLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLTII 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           E L +K++  +    +S     +K  +A    AR
Sbjct: 355 ENLTKKRMTGMKPATASEAFQAKK-KVALKRIAR 387


>gi|332088993|gb|EGI94105.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 5216-82]
          Length = 441

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 234/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT++D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATLSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|323268735|gb|EGA52195.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 404

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 160/390 (41%), Positives = 234/390 (60%), Gaps = 8/390 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 QMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKI 385
             IEKL++K++  +   G     +   E I
Sbjct: 358 RDIEKLLKKEIPRITTPGYEPDPSIKAEPI 387


>gi|224582633|ref|YP_002636431.1| ATP-dependent RNA helicase rhlE [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224467160|gb|ACN44990.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 488

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 160/390 (41%), Positives = 234/390 (60%), Gaps = 8/390 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 QMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKI 385
             IEKL++K++  +   G     +   E I
Sbjct: 358 RDIEKLLKKEIPRITTPGYEPDPSIKAEPI 387


>gi|261408394|ref|YP_003244635.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|329929405|ref|ZP_08283153.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
 gi|261284857|gb|ACX66828.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
 gi|328936492|gb|EGG32937.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
          Length = 533

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 149/402 (37%), Positives = 231/402 (57%), Gaps = 11/402 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FAD GL P+V+ A+ + G+ + TPIQ ++IP+ L   D+ G AQTGTGKTA+F LP++ 
Sbjct: 3   NFADFGLEPRVLQAITELGFEEATPIQSQSIPIALTGKDMIGQAQTGTGKTAAFGLPLIH 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + K   R+     LI+ PTRELA QVA+   K  +   +    + GG     Q + L+R
Sbjct: 63  KIAKEEERIV---ALIMTPTRELAIQVAEEIGKLSRFKGIRSLAIYGGQDIGRQIRALKR 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH NR  + +++++ +V+DEAD MLDMGF+  IQ+I  LVP  RQTL
Sbjct: 120 KPQIIIGTPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDIQSILKLVPEERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +QK++  F    K  E  +      +      A      ++       L  
Sbjct: 180 LFSATMPANIQKLASQF---LKEPEHVSVIPKHVSAPLIDQAYIEVPERQKFEALSRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            ++ +  I+F   K+ V  L  +L+K+G+S   +HG++ Q  R  ++  F++G+I ++VA
Sbjct: 237 MESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HV NFD+P   E+Y+HRIGRTGRAG+ G A++ V   ++ H+  IE
Sbjct: 297 TDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLYFIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           ++   ++         L    E I+  Q   A +   I ++ 
Sbjct: 357 RVTRHRIPRKP-----LPTIAEAIEGKQRIIAERVLEIIEQG 393


>gi|157105113|ref|XP_001648723.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108869079|gb|EAT33304.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 400

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL  +++  V   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L 
Sbjct: 28  TFNSMGLREELLRGVYAYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSIAILQ 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++      ++     L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 88  SMDTTLRETQVLC---LSPTRELAVQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDY 144

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++LV+DEAD ML+ GF   I ++   +P   Q  
Sbjct: 145 GQHVVSGTPGRVFDMIKRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVC 204

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 205 LISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 262

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R +I+  F+ G  ++++ 
Sbjct: 263 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRSGQSRVLIT 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 323 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIE 382

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 383 QYYSTQIDEMPMNVADL 399


>gi|237796237|ref|YP_002863789.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Ba4 str. 657]
 gi|229263626|gb|ACQ54659.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Ba4 str. 657]
          Length = 524

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 138/383 (36%), Positives = 224/383 (58%), Gaps = 5/383 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L L+  V+ A+   G+  P+ IQ K+IP+VL+  DV   AQTGTGKT +F  P+++
Sbjct: 5   NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   + + +  + L+L PTRELA Q+ D  ++  +     V  + GG   E Q K ++ 
Sbjct: 65  AL-CDKEKKKGVKALVLTPTRELALQIKDELKRLSEYSKTKVLPVYGGESIERQIKDIKS 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR+LDH NR  L +  I+ L++DEAD ML+MGFI  I+ I       +QT+
Sbjct: 124 GVDIVVGTPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++K++ N+++           S                 K  AL +  +  
Sbjct: 184 LFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAVKNKDKLEALCR--IID 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  ++ IIFC  K+ V  L  +++ +G++V  +HG++ Q  R+  L  FK+ T+  +VA
Sbjct: 242 SEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ ++ HV N+D+P  AE+Y+HRIGRTGRA + G A++LV   ++  I  IE
Sbjct: 302 TDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIE 361

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
           ++ + K+     +L +L   LEK
Sbjct: 362 RITKSKIK--KKELPTLEDILEK 382


>gi|255009347|ref|ZP_05281473.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313147103|ref|ZP_07809296.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313135870|gb|EFR53230.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
          Length = 418

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 142/430 (33%), Positives = 234/430 (54%), Gaps = 16/430 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ + IP++L+  D+  +AQTGTGKTA+F+LP+L
Sbjct: 1   MKFSELQLNDNVLEALDAMRFEECTPIQEQAIPVILEGRDLIAVAQTGTGKTAAFLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
             L +G         +I+ PTRELA Q+    E +     ++   + GG     FE Q K
Sbjct: 61  NRLSEGGHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLMLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYEDIMQIVKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++   L NP  +++       +       A Y  Y  +   + +
Sbjct: 181 RQTIMFSATMPSKIQQLANTILNNPVEVKLAVSKPAEKI----VQAAYVCYENQKLGIVR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L +++  +  IIF + K  V  +  +L+    +V  +H +++Q  R  I+  FK G I 
Sbjct: 237 SLFAEEVPERVIIFASSKLKVKEVAKALKMMKLNVGEMHSDLEQAQREFIMHEFKSGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ +RG+DI D+  V NFDVP+ +E+Y+HRIGRT RA   G A T V +++  + 
Sbjct: 297 ILVATDIVSRGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF-DRRKKNYSSQ 416
             IE  +EK++  +        P   ++  A   + R NN   +    F +  ++N +  
Sbjct: 357 KNIENFLEKEIYKI--------PVPSELGEAPQYNPRSNNSGGRGGRNFRNGGRRNSNGG 408

Query: 417 KSHIPLKESE 426
           +S  P    +
Sbjct: 409 RSASPRSGRK 418


>gi|90408477|ref|ZP_01216636.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
 gi|90310409|gb|EAS38535.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
          Length = 426

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 157/371 (42%), Positives = 228/371 (61%), Gaps = 4/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL  +++ AV + GY KP+PIQ + IP++L   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLPEELLRAVKEQGYTKPSPIQEQAIPVILSGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L KG   +    R LIL PTRELAAQ+ ++   YG+N  L  A++ GG+    Q + L
Sbjct: 61  ANLMKGERAKANQVRVLILTPTRELAAQIHESVCNYGQNLPLRSAVVFGGVKINPQMQLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DVL+ TPGR+LD + +  +    +E+LV+DEADRMLDMGFI  I+ I   +P  RQ
Sbjct: 121 RRGVDVLVATPGRLLDLYQQNAVRFKQLEVLVLDEADRMLDMGFIHDIKRIIKFLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +++++K+++  + +P  I V+  ++TAE++                      
Sbjct: 181 NLLFSATFSNDIRKLAKGLVNDPVEISVSPRNTTAESVTQFIYEVDKTKKSPLLSTL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  ++F   K     L   LE +G    AIHGN  Q +R + L++FKEG I ++
Sbjct: 238 IKENKWKQVLVFSKTKHGANRLVKQLEGRGILSAAIHGNKSQAARTRALASFKEGKITVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V NFD+P+ +E+Y+HRIGRTGRAG  G+A +LV +++ K +  
Sbjct: 298 VATDIAARGIDIDQLEQVVNFDLPHVSEDYVHRIGRTGRAGNKGEAISLVCEDEFKLLKD 357

Query: 360 IEKLIEKKVDW 370
           IEKLI+K +  
Sbjct: 358 IEKLIKKIIPR 368


>gi|331701930|ref|YP_004398889.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus
           buchneri NRRL B-30929]
 gi|329129273|gb|AEB73826.1| DEAD/DEAH box helicase domain protein [Lactobacillus buchneri NRRL
           B-30929]
          Length = 506

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 137/368 (37%), Positives = 218/368 (59%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+ ++G+ + TPIQ +TIP+VL+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLSDHLLTAINNSGFEEATPIQGETIPMVLKGEDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   + GK+    V ++ GG     Q   L+
Sbjct: 61  QKIDFDNPNVQ---ALIISPTRELAIQTQEEIYRLGKDEKAKVQVVYGGADIRRQINALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILDH  R  L + +++ LV+DEAD ML+MGF+  I++I    P  RQT
Sbjct: 118 GHPQIVVGTPGRILDHIRRHTLKLEHVKTLVLDEADEMLNMGFLDDIEDIIKQTPKERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  ++++V   F+++P ++ +     T + I+  +V                  
Sbjct: 178 LLFSATMPAQIKRVGVQFMRDPHQVTIKAKELTTDLIDQYYVRVKEYEKFDTMTR---FF 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+FC  K+ V  +   L+ +G+    +HG++ Q  R +I+  FK   I ++V
Sbjct: 235 DVQDPEVTIVFCRTKRRVDEVSKGLQARGYKAAGLHGDLTQARRTQIMQEFKAAKIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  V HV+N+D+P   + Y+HR+GRTGRAG+HG + T     ++ ++  I
Sbjct: 295 ATDVAARGIDISGVTHVYNYDIPQDPDGYVHRVGRTGRAGKHGVSITFATPNEMDYLREI 354

Query: 361 EKLIEKKV 368
           EKL + ++
Sbjct: 355 EKLTKVRM 362


>gi|294789302|ref|ZP_06754540.1| ATP-dependent RNA helicase RhlE [Simonsiella muelleri ATCC 29453]
 gi|294482727|gb|EFG30416.1| ATP-dependent RNA helicase RhlE [Simonsiella muelleri ATCC 29453]
          Length = 455

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 153/442 (34%), Positives = 236/442 (53%), Gaps = 11/442 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + FADL L   ++ A+  AGY  PTPIQ++ IP  L   D+   AQTG+GKTA+F+LP +
Sbjct: 3   IQFADLNLDKNILSALQSAGYHSPTPIQMQAIPAALADKDIMASAQTGSGKTAAFLLPSL 62

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
             I+++     + PR L+L PTRELAAQV  N + Y  N        L+GG  F  Q K 
Sbjct: 63  QKIIKRSEKPGKGPRVLVLTPTRELAAQVEKNAQIYANNMKWVRTVTLVGGSSFGQQIKM 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R  DV++ TPGR++DH   G++    +E+L++DEADRMLDMGFI  I+ I +  P  R
Sbjct: 123 LSRPIDVIVATPGRLMDHMRSGRIDFERLEVLILDEADRMLDMGFIDDIETIVAATPEDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    +NP+ IE+       +  E         +  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKNPEIIEIEREDKQGKIEEQLLYCDDKNHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     L   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A +     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGMAISFAEVNEYIAVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IE+ IE+K+  +      +   LE       N  RK         G    ++  S +  
Sbjct: 360 KIERYIERKLPEV------VIEGLEPTRKRNKNADRKPRGKGGFGGGKRDGERWSSGRGE 413

Query: 419 HIPLKESEKISKLQQDIQENDA 440
                + +  +K   D +++ A
Sbjct: 414 KKSYGDKKPYAKRDGDFKKDGA 435


>gi|307729080|ref|YP_003906304.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307583615|gb|ADN57013.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
          Length = 487

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 174/431 (40%), Positives = 244/431 (56%), Gaps = 18/431 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+P ++ AV ++GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L    +    P        IL PTRELA QVA N + Y K+  L  A++ GG+    Q+
Sbjct: 72  RLLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQS 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 EQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   +STA  +                +  
Sbjct: 192 ERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQIVYEVAEGDKTGAVVQL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                + ++K  I+FCN K     L  SLE+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 ---IRERSLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  IEKLI++ +     D+  L      +D    +H     P  ++  G D R     + 
Sbjct: 369 LADIEKLIKRPL-----DVQRLT-----VDAPVRHHHEDRAPRRERGEGRDERGARRRAG 418

Query: 417 KSHIPLKESEK 427
            S         
Sbjct: 419 SSSGSFDRPHH 429


>gi|77413593|ref|ZP_00789780.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 515]
 gi|77160359|gb|EAO71483.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 515]
          Length = 528

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 155/394 (39%), Positives = 232/394 (58%), Gaps = 7/394 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ AV  AG+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L 
Sbjct: 61  NKIHT---EDNTIQALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGR+LD   R  L +N+IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPEARQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++NP+ +++     T   ++  +V                  
Sbjct: 178 LLFSATMPDPIKRIGVKFMKNPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLTII 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           E L +K++  +    +S     +K  +A    AR
Sbjct: 355 ENLTKKRMTGMKPATASEAFQAKK-KVALKRIAR 387


>gi|254884100|ref|ZP_05256810.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA]
 gi|319640865|ref|ZP_07995576.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A]
 gi|254836893|gb|EET17202.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA]
 gi|317387502|gb|EFV68370.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A]
          Length = 425

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 134/423 (31%), Positives = 225/423 (53%), Gaps = 15/423 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L   V+ A+    + + TP+Q  TIP++L+  D+ G+AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELNLEEGVLQALDAMRFEECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L KG         +I+ PTRELA Q+    E +      +   + GG       ++ +
Sbjct: 61  NQLSKGGYPEDAINCVIMSPTRELAQQIDQQMEGFSYFLPASSVAVYGGNDGVRFEQEKK 120

Query: 121 RGA---DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 DV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q++++  L NP  I++       +         Y  Y ++   + Q
Sbjct: 181 RQTIMFSATMPAKIQQLAKTILNNPVEIKLAVSKPAEKI----IQTAYICYERQKLGIIQ 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    T +  IIF + K  V  +  + ++   +V  +H +++Q  R +I+  FK G I 
Sbjct: 237 SLFQDQTPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+ +RG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V++++    
Sbjct: 297 ILIATDIVSRGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANHDGCAITFVSEKEQTQF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            AIE  + + +  +        P  E++  A   + R          G  R++ NY  +K
Sbjct: 357 KAIENFLGRNIYKI--------PVPEELGEAPEYNPRSGAGRSNHKGGGSRKQGNYKGKK 408

Query: 418 SHI 420
           +  
Sbjct: 409 NST 411


>gi|47217410|emb|CAG00770.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 456

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 142/441 (32%), Positives = 226/441 (51%), Gaps = 13/441 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGLS  +V      G  KPTP+Q   +P +LQ  D  G A+TG+GKTA+FVLP+L 
Sbjct: 3   DFSSLGLSDWLVKQCKQLGIHKPTPVQENCVPAILQGRDCMGCAKTGSGKTAAFVLPVLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +          L+L PTRELA Q+A+ F   GK   L   +++GG+   +Q  +L  
Sbjct: 63  KLSE---DPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLRDCIVVGGMDMVSQASELSN 119

Query: 122 GADVLICTPGRILDHFNRGKLLMN-NIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR+ DH           I+ L++DEADR+L+ G   + +++ +++P     
Sbjct: 120 QPHVVVATPGRLADHIRSSSTFSMSKIQFLIMDEADRLLEQGCTDFTKDLETIMPALPAK 179

Query: 181 LL---FSATMTDELQKVSENFLQNPKRIE-VNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
                FSAT+TD LQ++    +  P   E  +   +  E  +   +            L 
Sbjct: 180 RQTLLFSATLTDTLQELKNIAMNKPFFWESKSETRTVDELDQRYILTPEKVKDAYLVHLI 239

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q    Q    + IIF N  KN   L   L++  F   ++H  + Q+ R   L+ FK    
Sbjct: 240 QTFTDQHDDWSIIIFTNTCKNCQILTMMLQQFNFPTISLHSMMKQKQRFANLAKFKASVY 299

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++A+D+AARGLDIP V  V N + P   + YIHR+GRT RAGR+G + TLV + DI  
Sbjct: 300 KILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHL 359

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           + +IE+ I+ K+     +   +   L      Q N  R+   I  +ST FD +K+    +
Sbjct: 360 VHSIEEQIQTKLKEFPVEEKEVLKIL-----TQVNVTRRECEIRLESTDFDEKKEINKRK 414

Query: 417 KSHIPLKESEKISKLQQDIQE 437
           +  +  K+ +  +K + ++++
Sbjct: 415 QLILEGKDPDLEAKRKAELEK 435


>gi|149039843|gb|EDL93959.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Rattus norvegicus]
          Length = 940

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 142/448 (31%), Positives = 236/448 (52%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 432

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 433 HIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 492

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 493 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 552

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S     +E   +    +      L  
Sbjct: 553 DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLEL 612

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                     + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT 
Sbjct: 613 L--GHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTC 670

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 671 KLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARY 730

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   +   
Sbjct: 731 AGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDET 783

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +   E +K+ K    +Q++D +   
Sbjct: 784 EQAL-ANERKKLQKAALGLQDSDDEDAA 810


>gi|126303302|ref|XP_001379053.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX27
           (DEAD box protein 27) [Monodelphis domestica]
          Length = 796

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 154/457 (33%), Positives = 241/457 (52%), Gaps = 24/457 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 223 LTFQDMNLSRPLLKAITTMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 282

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++  +   +T  L +GG+  ++Q   L 
Sbjct: 283 ERLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSTVTTCLAVGGLDVKSQEAALR 342

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            G D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 343 AGPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIQMCSHHRQ 402

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 403 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSAL 462

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 463 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 522

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K +  
Sbjct: 523 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 582

Query: 360 IEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K  +                  K++ +  D+ ++     +    QH+ A+ N      
Sbjct: 583 IVKSAKAPVKARILPQDVILKFRGKIEKMEKDVYAVLRLEAEEKEMQHSEAQINTAKRLL 642

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQEND 439
             G      N   +++    KE  K  K+ + +QE D
Sbjct: 643 EKG------NEEPERTWFQSKEERKKEKIAKALQEFD 673


>gi|89894700|ref|YP_518187.1| hypothetical protein DSY1954 [Desulfitobacterium hafniense Y51]
 gi|89334148|dbj|BAE83743.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 537

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 149/384 (38%), Positives = 234/384 (60%), Gaps = 9/384 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ LS +V+ A+ + G+ +P+PIQ   IP+ +   D+ G AQTGTGKTA+F +P+  
Sbjct: 15  SFGEISLSKQVLQALSEMGFEEPSPIQKAAIPVAMDGLDLIGQAQTGTGKTAAFGIPICE 74

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +      V+    LIL PTRELA QV++   K GK  ++    + GG   + Q + L  
Sbjct: 75  KINPKFQAVQA---LILTPTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIRALRF 131

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G+ V++ TPGRILDH NRG L +  ++++V+DEAD MLDMGF+  I+ I   VP   + +
Sbjct: 132 GSQVVVGTPGRILDHLNRGTLKLQYVKMVVLDEADEMLDMGFVDDIETILKQVPKEERQV 191

Query: 182 L-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + FSATM  E++K+++N++  PK + V+    T   IE      Y    K        + 
Sbjct: 192 MLFSATMPPEIKKLAQNYMSQPKSVAVSRDELTVPLIEQ---VFYETRDKIKVDALCRII 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +   IIFC  K+ V  L  +LE +G+   A+HG++ Q+ R +++  F++G ++L+V
Sbjct: 249 DMEDIGQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELLV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI +V HV NFD+P   E+Y+HRIGRTGRAGR G+A TLV+  + + +  I
Sbjct: 309 ATDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVSSREYRQLRLI 368

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E+LI+ ++  +  +L +L    E+
Sbjct: 369 ERLIKTRI--VRKELPTLADVSER 390


>gi|222054856|ref|YP_002537218.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32]
 gi|221564145|gb|ACM20117.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32]
          Length = 456

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 146/432 (33%), Positives = 216/432 (50%), Gaps = 18/432 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L  +V+  + D G+   TPIQ K +P  L   DV G AQTGTGKTA+F++ + 
Sbjct: 1   MKFTDLNLPEQVLKGIADTGFTDCTPIQEKALPPALLGKDVAGQAQTGTGKTAAFLISLF 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           T    ++       PR LIL PTREL  Q+  + +  GK     +  + GG+ +  Q   
Sbjct: 61  TRLLNQEKAGTEHHPRALILAPTRELVVQIEKDAQALGKYTGFNIQAIYGGVDYMKQKNA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D++I TPGR++D+  +    + NIE LVIDEADRM DMGFI  ++ I   +P   
Sbjct: 121 LKEGVDIVIGTPGRLIDYLKQKVYSLKNIEALVIDEADRMFDMGFIADLRFILRRLPPFD 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
                  + T   + +   +       +V        T E      Y    K+   L   
Sbjct: 181 ARQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQM-TAERVEQVLYHVARKEKFPLLLG 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +  M   +IF N K+    L   L    F    I G+++QR RM+IL +FK G + +
Sbjct: 240 LLRKKGMDRTMIFVNTKREAEYLYDRLNANEFPARVISGDVEQRKRMRILEDFKNGKLPI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+D+A+RGL I  V HV N+D+P  AE+Y+HRIGRT RAG  GKA +L  ++   HI+
Sbjct: 300 MIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISLADEDGAFHIE 359

Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKSTGFDRRKKNYSS 415
            I + I++K+  +W   +L              H++ R K  P P+       + +N+  
Sbjct: 360 DIHEYIKEKIPVEWAEDELFV------------HDYKRTKPRPKPESKPAAKPKGRNHGK 407

Query: 416 QKSHIPLKESEK 427
                P +  EK
Sbjct: 408 SGGKAPARTVEK 419


>gi|157737720|ref|YP_001490403.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018]
 gi|157699574|gb|ABV67734.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018]
          Length = 435

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 168/438 (38%), Positives = 264/438 (60%), Gaps = 6/438 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL  +++ A+ + GY  PTPIQ K+IP++L + DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSNLGLCKEILRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L+    + +  +    IL PTRELAAQVA + E YGK      A++ GG+    Q   
Sbjct: 61  QRLKDSNFKDKKTQVRALILTPTRELAAQVAQSVETYGKYLPFKSAVIFGGVGINPQKAL 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G D++I TPGR+LD  ++  L ++ IE LV+DEADRMLDMGFI  I+ I +++P  R
Sbjct: 121 LKKGVDIIIATPGRLLDLISQDSLDLSKIEFLVLDEADRMLDMGFINDIKKILAILPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT ++E++K+++  L++P  +EV+  +S +  +E           K+       
Sbjct: 181 QNLLFSATFSNEIKKLADGLLKSPVLVEVSKANSASFKVEQVVHHVDKDRKKEL---LLH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L ++++ +  ++F   K     L  +L K   +  AIHGN  Q +R K L +FK G +++
Sbjct: 238 LVNKNSWQQVLVFTRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV NF++PN AE+Y+HRIGRTGRAG +G A +LV  ++ +++ 
Sbjct: 298 LVATDIAARGIDIEQLPHVVNFELPNVAEDYVHRIGRTGRAGNNGIAISLVCVDEHEYLF 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIA-QHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            IEKLI++K+  +  +   +NP ++   I  + N   K N   Q      + + + SS K
Sbjct: 358 GIEKLIKQKIKKVEINGFKVNPNIKAEPIGNRSNRGNKANNSNQNRKVKPKDENSSSSTK 417

Query: 418 SHIPLKESEKISKLQQDI 435
           S      + + +   ++I
Sbjct: 418 SKRFASRNRRTNTSSKNI 435


>gi|74142079|dbj|BAE41100.1| unnamed protein product [Mus musculus]
          Length = 411

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 99  CLDI---QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKELIYDVYRYLPPATQVV 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 216 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 274 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 334 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 393

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 394 QYYSTQIDEMPMNVADL 410


>gi|88813706|ref|ZP_01128932.1| DEAD/DEAH box helicase-like protein [Nitrococcus mobilis Nb-231]
 gi|88789025|gb|EAR20166.1| DEAD/DEAH box helicase-like protein [Nitrococcus mobilis Nb-231]
          Length = 586

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 157/437 (35%), Positives = 241/437 (55%), Gaps = 16/437 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL+P V+ A+ D GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L
Sbjct: 9   ITFQDLGLNPAVLNALHDVGYEVPSPIQAHTIPHILAGRDVLGQAQTGTGKTAAFALPLL 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + L+  +    +P+ L+L PTRELA QVA+ F++Y         L +  G  +  Q ++L
Sbjct: 69  SRLDLSQ---AVPQVLVLTPTRELAIQVAEAFQRYAARLTGFHVLPLYGGQDYRGQFQRL 125

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  V++ TPGR++DH  RG L ++ +  LV+DEAD ML MGFI  ++ I   +P TRQ
Sbjct: 126 AHGTHVVVGTPGRVMDHMRRGTLKLDALACLVLDEADEMLRMGFIDDVEWILDQIPSTRQ 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSAT+   ++++++  L NP+ I +   ++TAETI   +      +           
Sbjct: 186 IALFSATLPPVIRRIAKKHLHNPQEISIKVRTATAETIRQRYWLVNGTHKLDALTRILEA 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   I+F   +   V L   LE +G++  A+ G+I Q+ R   +   K G + ++
Sbjct: 246 EPFDGM---IVFVRTRTATVELAEKLEARGYAAAALSGDISQKLREHTVQRLKGGKLDIL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+PN  E Y+HRIGRTGRAGR G A   V   + + +  
Sbjct: 303 VATDVAARGLDVERISHVINYDIPNDTEAYVHRIGRTGRAGRAGDAILFVTPREQRMLRM 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKID---IAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           IEK   +K+  ++       P  E I+   IA+      +    Q  + +    ++Y   
Sbjct: 363 IEKATRQKITAMS------PPSTEAINDQRIARFQQKISDVMAAQDLSFYRELMESYQRH 416

Query: 417 KSHIPLKESEKISKLQQ 433
                ++ +  ++KL Q
Sbjct: 417 HDVPAIEIAAALAKLVQ 433


>gi|91087239|ref|XP_975511.1| PREDICTED: similar to eIF4AIII CG7483-PA [Tribolium castaneum]
 gi|270010579|gb|EFA07027.1| hypothetical protein TcasGA2_TC009998 [Tribolium castaneum]
          Length = 404

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L  +++  V   G+ KP+ IQ + I  +++  DV   AQ+GTGKTA+F + +L 
Sbjct: 32  QFKNMHLKEELLRGVFAYGFEKPSAIQQRAIKPIIKGRDVIAQAQSGTGKTATFSIAILQ 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+      ++     L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 92  SLDLQTRETQVLC---LSPTRELAVQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDY 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   ++++LV+DEAD ML+ GF   I ++   +P + Q +
Sbjct: 149 GQHVVSGTPGRVYDMIRRRALRTRSVKMLVLDEADEMLNKGFKEQIYDVYRFLPPSTQVV 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 209 LISATLPHEILEITSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  ++++ 
Sbjct: 267 TLTITQAVIFCNTKRKVDWLTEKMRENNFTVSSMHGDMPQKERDNIMKEFRSGQSRVLIT 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 327 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIE 386

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 387 QYYSTQIDEMPMNVADL 403


>gi|150005667|ref|YP_001300411.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482]
 gi|149934091|gb|ABR40789.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482]
          Length = 425

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 134/421 (31%), Positives = 225/421 (53%), Gaps = 15/421 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L   V+ A+    + + TP+Q  TIP++L+  D+ G+AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELNLEEGVLQALDAMRFEECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L KG         +I+ PTRELA Q+    E +      +   + GG       ++ +
Sbjct: 61  NQLSKGGYPEDAINCVIMSPTRELAQQIDQQMEGFSYFLPASSVAVYGGNDGVRFEQEKK 120

Query: 121 RGA---DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 DV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q++++  L NP  I++       +         Y  Y ++   + Q
Sbjct: 181 RQTIMFSATMPAKIQQLAKTILNNPVEIKLAVSKPAEKI----IQTAYICYERQKLGIIQ 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    T +  IIF + K  V  +  + ++   +V  +H +++Q  R +I+  FK G I 
Sbjct: 237 SLFQDQTPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+ +RG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V++++    
Sbjct: 297 ILIATDIVSRGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANHDGCAITFVSEKEQTQF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            AIE  + + +  +        P  E++  A   + R          G  R++ NY  +K
Sbjct: 357 KAIENFLGRNIYKI--------PVPEELGEAPEYNPRSGAGRSNHKGGGSRKQGNYKGKK 408

Query: 418 S 418
           +
Sbjct: 409 N 409


>gi|120556730|ref|YP_961081.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120326579|gb|ABM20894.1| DEAD/DEAH box helicase domain protein [Marinobacter aquaeolei VT8]
          Length = 443

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 170/411 (41%), Positives = 238/411 (57%), Gaps = 5/411 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS ++V A  D GY  P+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSSLGLSEQLVRATADQGYETPSPIQQQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +     + PR LIL PTRELAAQV D+   Y K      A++ GG+    Q  KL 
Sbjct: 61  QRLAENPRTGKGPRALILTPTRELAAQVHDSVNLYSKYVPTKAAVVFGGVKINPQMMKLR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVL+ TPGR++D + +  +  N +EILV+DEADRMLDMGFI  I+ I +L+P  RQ 
Sbjct: 121 KGLDVLVATPGRLMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILALLPAKRQN 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT ++E++ +++  L NP ++EV   ++TAE ++                      
Sbjct: 181 LLFSATFSNEIRTLAQGLLDNPVQVEVAARNTTAEKVKQSVYPVDQSQKTALLSKL---V 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     ++F   K     L   LEK G +  AIHGN  Q +R + L++FK G ++++V
Sbjct: 238 RDNAWDQVLVFTRTKHGANRLTQKLEKDGITAAAIHGNKSQGARTRALADFKAGEVRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV+ ++ K +  I
Sbjct: 298 ATDIAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADEGKLLAGI 357

Query: 361 EKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           EKLI+K++    + G     N PL+    A  + AR   P       F  +
Sbjct: 358 EKLIKKQLPRKEVEGFEPKNNLPLKPKAKADPSKARNRRPQGGNGKNFGPK 408


>gi|319938171|ref|ZP_08012569.1| ATP-dependent RNA helicase RhlE [Coprobacillus sp. 29_1]
 gi|319806692|gb|EFW03341.1| ATP-dependent RNA helicase RhlE [Coprobacillus sp. 29_1]
          Length = 437

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 158/441 (35%), Positives = 246/441 (55%), Gaps = 10/441 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   +  A+    Y + TPIQ + IPL+L+  D+ G A+TGTGKTA+F LP+L
Sbjct: 1   MKFKELKLIEPLQMAIEKLNYTEATPIQEQAIPLLLEGRDLLGCAKTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L       + PRT+   IL PTRELA Q+ + F+      NL   ++ GG+   +Q  
Sbjct: 61  QKLYLRDESEKYPRTIKALILAPTRELAMQIDETFQSMNSFVNLKSTVIFGGVRQGSQVT 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           K+ERG DVLI TPGR+ D + +G L +++IE  V+DEADRMLDMGFI  I+ I   +P  
Sbjct: 121 KIERGIDVLIATPGRLSDLYKQGLLDLSHIEYFVLDEADRMLDMGFINDIRRIMKYIPKQ 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT+  E+Q + +  L NP+++ V++   T E I+            K  +   
Sbjct: 181 RQTMLFSATLPKEIQHLIDEILNNPEKVMVSSGQMTVERIQQSLYYVDKANKAKLLIKLL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                  + N I+F   K+N   LC  L++ G    AIHG+  Q +R++ L+ FKE  ++
Sbjct: 241 ---ENPQIYNAIVFVRTKRNANTLCKKLQRAGIEAEAIHGDKSQNARVRALNRFKEDKVR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+  + HV NFD+P +AENY+HRIGRT RAG  G A T    ++   +
Sbjct: 298 VLVATDIAARGIDVDHLTHVVNFDLPEQAENYVHRIGRTARAGADGTAITFCCFQEKSDL 357

Query: 358 DAIEKLIEKKVDWLN---GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
             +EK I +K+  +      +   + P++K+  +Q   + + +    +       +K   
Sbjct: 358 SEVEKFIGEKIPVIENPYYPMEDFSVPVKKV-TSQMKKSNQTSKKNNQKQKNQNTQKIIQ 416

Query: 415 SQKSHIPLKESEKISKLQQDI 435
            QK   P ++     + ++ +
Sbjct: 417 KQKHSQPKQKKRSFHQNKKTV 437


>gi|197334079|ref|YP_002154825.1| ATP-dependent RNA helicase RhlB [Vibrio fischeri MJ11]
 gi|226739236|sp|B5FF87|RHLB_VIBFM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|197315569|gb|ACH65016.1| ATP-dependent RNA helicase RhlB [Vibrio fischeri MJ11]
          Length = 432

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 143/423 (33%), Positives = 216/423 (51%), Gaps = 9/423 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FADLGL P+V+  +   G++K TPIQ K +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  NFADLGLQPQVIDGLNAKGFIKCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      ++  PR +I+ PTRELA Q+ ++ E    +  L  AL  GG  +E Q +
Sbjct: 70  HLLTTPAPEGRKITQPRAIIMAPTRELAIQIFNDAESLIASTGLKAALAYGGERYEKQQQ 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +E+G D+LI T GRI+D + +G +    I+ +V+DEADRM D+GFI  I+ I   +P  
Sbjct: 130 VIEQGVDILIGTTGRIIDFYKQGHIDFKMIQAVVLDEADRMFDLGFIKDIRFIFRRMPAP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T   +     F    +  E        +T        +   +     L Q
Sbjct: 190 TERLNMLFSATLSYRVQELAFEH-MQEPEHVVVEPEQKTGHRIKEELFYPSNDHKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L      V  + G++ Q+ R +IL  F +G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHKCESVWGHLAADKHRVGLLTGDVPQKKRERILEEFTQGNVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFNFD+PN AE+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGASGNSISFACEEYAINL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE+ IE  +   + D    L  L  PL      Q N    N      +    R ++  
Sbjct: 369 PAIEEYIEHSIPQSDYDASALLEDLPAPLRLQRRPQQNRRNNNGQRQGGNRKHSRPRQPR 428

Query: 414 SSQ 416
           ++Q
Sbjct: 429 NTQ 431


>gi|317010528|gb|ADU84275.1| ATP-dependent RNA helicase [Helicobacter pylori SouthAfrica7]
          Length = 494

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 137/392 (34%), Positives = 215/392 (54%), Gaps = 7/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL   V+ +V +AG+  P+PIQ K IP +LQ  DV   AQTGTGKTA+F LP++ 
Sbjct: 23  SFNGLGLKESVLKSVYEAGFTSPSPIQEKAIPAILQGRDVIAQAQTGTGKTAAFALPIIN 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK+       + GG   + Q + +++
Sbjct: 83  NLKNN----HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKK 138

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH    ++     +++V+DE+D MLDMGF+  I+ I   +P   Q L
Sbjct: 139 NPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 198

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++++  L+NP +I +   + T   I   F         +  +       
Sbjct: 199 LFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERSEAIMRLL---D 255

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   KK    L   L  + +   A+HG++DQR R   +  FK+    ++VA
Sbjct: 256 TQAPEKSIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVA 315

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HVFN+ +P   E+YIHRIGRTGRAG+ G A TLV   + K +  ++
Sbjct: 316 TDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 375

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K I+ +++       + N  ++ +  A+ +  
Sbjct: 376 KEIDSEIELFEIPTINENQIIKTLHDAKVSEG 407


>gi|283833909|ref|ZP_06353650.1| ATP-dependent RNA helicase RhlE [Citrobacter youngae ATCC 29220]
 gi|291070581|gb|EFE08690.1| ATP-dependent RNA helicase RhlE [Citrobacter youngae ATCC 29220]
          Length = 447

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 161/391 (41%), Positives = 234/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLVTHQPHGKSRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVLI TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLIATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKSLAEKLLRNPLEIEVARRNTASEQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 QMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKID 386
             IEKL++K++  +   G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRITTPGYEPDPSIKAEPIQ 388


>gi|116787191|gb|ABK24405.1| unknown [Picea sitchensis]
          Length = 408

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 200/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G+   ++  +   G+ KP+ IQ + +  ++   DV   AQ+GTGKT+   L +  
Sbjct: 36  SFDQMGIRDDLLRGIYQYGFEKPSAIQQRAVMPIINGRDVIAQAQSGTGKTSMIALAVCQ 95

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I++     V+    LI+ PTRELAAQ        G   N+     IGG       +KLE 
Sbjct: 96  IIDTSIREVQA---LIVSPTRELAAQTEKVILAIGDFINVQAHACIGGKSIGEDIRKLEY 152

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    +++LV+DE+D ML  GF   I ++   +P   Q +
Sbjct: 153 GVHVVSGTPGRVCDMIKRRTLRTRAVKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVV 212

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 213 LISATLPHEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 270

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   +    F+V ++HG++ Q+ R  I++ F+ GT ++++ 
Sbjct: 271 TLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFRAGTTRVLIT 330

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 331 TDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDIRILRDIE 390

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 391 QYYSTQIDEMPMNVADL 407


>gi|253689449|ref|YP_003018639.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756027|gb|ACT14103.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 441

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 145/442 (32%), Positives = 225/442 (50%), Gaps = 8/442 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++L L   ++ A+ D GY +PT IQ + IP  ++  DV G A TGTGKTA+++LP + 
Sbjct: 5   NFSELDLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++  R +   PR LIL PTRELA QVAD    +  + +L VA + GG+ +    +   
Sbjct: 65  HLIDFPRKKSGPPRILILTPTRELAMQVADQARAFAAHTHLDVATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT
Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  +  K     L N     + +  S  E  +       A   K    L     
Sbjct: 185 LLFSATLEGDAIKDFAERLLNDPVE-IESDPSRRERKKILQWYYRADDVKHKTALLCHQL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   IIF  +++ V  L   L + G + C + G + Q  R + +    +G + ++V
Sbjct: 244 KQPDVTRSIIFVRKRERVHELVAWLREAGINSCYLEGEMVQAKRNEAIKRLSDGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HVFNFD+P  ++ Y+HRIGRTGRAGR G A + V   D   +  I
Sbjct: 304 ATDIAARGIDINDVSHVFNFDLPRTSDTYLHRIGRTGRAGRKGCAISFVEAHDHLLLGKI 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
            + +    + L   +     P  K   A+         +  +    ++ K+    +  H 
Sbjct: 364 SRYLN---EPLKPRVIDELRPTTKAPSAKTTGKPSKKVLAMRKEKKEKEKEKVKVKVRH- 419

Query: 421 PLKESEKISKLQQDIQENDADS 442
             ++S+ I K +Q  Q+ D  S
Sbjct: 420 --RDSKNIGKRRQPTQKTDEPS 439


>gi|110803350|ref|YP_698172.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens SM101]
 gi|110683851|gb|ABG87221.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens SM101]
          Length = 478

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 130/402 (32%), Positives = 224/402 (55%), Gaps = 6/402 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ A+ + GY  P+ +Q  +IP +L+  D+   +QTG+GKTASF +P+ 
Sbjct: 1   MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVC 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +V+    L+L PTRELA QV D     G+   +  A + G  PF  Q ++L+
Sbjct: 61  EKINIEEKKVQC---LVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIRELK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+ DH  RG L ++ +  +VIDEAD+ML MGFI  I++I   +   + T
Sbjct: 118 QRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT + E++++ E +++NP  +EV +     + IE    +      K          
Sbjct: 178 ALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEE---SAIEIEEKNKGKALWKCL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ I+FCN +  V ++   L+ +G +   +HG+++Q+ R++++ NF++   +++V
Sbjct: 235 YAYHPESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ +  +  V N++VP   E+Y+HRIGRTGRAGR GKA T V   + K+++ +
Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           E+ I  ++   +           KI         K +  P+K
Sbjct: 355 EEYIGYEIRKASLPSDEEVKAGRKIFKESQKVQLKESKKPKK 396


>gi|54302687|ref|YP_132680.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46916111|emb|CAG22880.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
          Length = 431

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 159/429 (37%), Positives = 245/429 (57%), Gaps = 12/429 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA    SP++V A+ + GY K TPIQ + IP   +  D+   AQTGTGKTA+F LP++
Sbjct: 1   MSFASQNFSPEIVRALTECGYEKLTPIQAQAIPHARRGSDILANAQTGTGKTAAFSLPII 60

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +  +         R LIL PTRELAAQ+A N  +Y K  +L  A + GG    +Q + 
Sbjct: 61  QQILEKPKSRGRFNVRALILAPTRELAAQIAQNIAEYTKYTDLKTAAIYGGTKMSSQERT 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE+G D+L+ TPGR+++H +   + + NIE LV DEADRMLDMGFI  ++ +   V    
Sbjct: 121 LEKGVDILVATPGRLIEHVDLKNVSLANIEFLVFDEADRMLDMGFITDMRKVMGEVNTNP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + ++  ++ + L+ PKRI V+  ++TA+T+ H       +  ++       
Sbjct: 181 QIMMFSATSSKQMNALASDILRKPKRIMVDRENTTADTVSHVVYPVDQERKRELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   K  ++F N K+    L   L+K G      HG+  Q +R + L  FKEG  ++
Sbjct: 239 -IGKKNWKQVLVFVNYKETANELVKELKKDGIKAVLCHGDKAQSARRRALDEFKEGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+++AARGLDI  + HV NFD+P  AE+Y+HRIGRTGRAG  G A + V+KE+   + 
Sbjct: 298 MVATEVAARGLDIQALPHVVNFDMPFLAEDYVHRIGRTGRAGLKGHAISFVSKEEELTLV 357

Query: 359 AIEKLIEKKV---DWLNGDLSSLNPPLEKIDIA---QHNHARKNNPIPQKSTGFDR-RKK 411
            +E+LI +++     L  + ++ +  ++K++     +    R NNP  Q+S+   R R +
Sbjct: 358 QVEQLIGQRIHRVQLLGYEPANRDAFVQKMNTKAAFKDRKGRTNNPTEQQSSSERRVRLR 417

Query: 412 NYSSQKSHI 420
                K+ I
Sbjct: 418 QAIKGKAKI 426


>gi|238753347|ref|ZP_04614710.1| ATP-dependent RNA helicase rhlE [Yersinia ruckeri ATCC 29473]
 gi|238708300|gb|EEQ00655.1| ATP-dependent RNA helicase rhlE [Yersinia ruckeri ATCC 29473]
          Length = 453

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 162/413 (39%), Positives = 242/413 (58%), Gaps = 7/413 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ A+ + GY+ PTPIQ + IP+VLQ  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAIEEQGYLVPTPIQRQAIPVVLQGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            IL +    +   R  R LIL PTRELAAQ+ +N E+Y K   L   ++ GG+    Q  
Sbjct: 61  QILNENAQPIKGRRPVRALILTPTRELAAQIGENVEQYSKYLKLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I            ++      
Sbjct: 181 RQNLLFSATFSDEIKGLASKLLNNPASVEVARRNTASEQITQSVHFVDKNRKREL---LS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +      +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G I+
Sbjct: 238 QMIGSQNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCIDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
             IE+L+++++     +    +P + K D  Q+    +    P    G   R 
Sbjct: 358 RDIERLLKREIPRFAIEGYEPDPSI-KADPIQNGRQGRGASRPGMGRGSATRS 409


>gi|77409647|ref|ZP_00786319.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae COH1]
 gi|77171747|gb|EAO74944.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae COH1]
 gi|319744779|gb|EFV97119.1| ATP-dependent RNA helicase [Streptococcus agalactiae ATCC 13813]
          Length = 528

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 154/394 (39%), Positives = 232/394 (58%), Gaps = 7/394 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ AV  AG+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L 
Sbjct: 61  NKIHT---EDNTIQALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGR+LD   R  L +N+IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPEARQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T   ++  +V                  
Sbjct: 178 LLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLTII 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           E L +K++  +    +S     +K  +A    AR
Sbjct: 355 ENLTKKRMTGMKPATASEAFQAKK-KVALKRIAR 387


>gi|323938152|gb|EGB34412.1| DEAD/DEAH box helicase [Escherichia coli E1520]
          Length = 454

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 158/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +++++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSNDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|226942043|ref|YP_002797117.1| RhlE3 [Laribacter hongkongensis HLHK9]
 gi|226716970|gb|ACO76108.1| RhlE3 [Laribacter hongkongensis HLHK9]
          Length = 582

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 168/472 (35%), Positives = 256/472 (54%), Gaps = 22/472 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ A+ +AGY +PTPIQ + I  VL   D+   AQTGTGKTA F LP+L
Sbjct: 4   ISFADLQLVDPLLRAITEAGYTEPTPIQREAIAPVLAGRDLMAAAQTGTGKTAGFALPLL 63

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                          PR L+L PTRELAAQV ++    G +  LT  ++ GG+  + Q +
Sbjct: 64  QRLAATHPHPHPAGRPRGLVLTPTRELAAQVGESIATLGTHLPLTSLVIFGGVRVKPQIE 123

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +  D+LI TPGR++D   +  + ++ +EILV+DEADRMLDMGFI  ++ +  L+P  
Sbjct: 124 ALTQRVDILIATPGRLIDLAKQEAVDLSGVEILVLDEADRMLDMGFIRDVRKVLKLLPAE 183

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT  D+++ +++ FL +P+ +EV+ P+ST E + H          ++      
Sbjct: 184 RQNLLFSATFNDDIKALADTFLHDPQLVEVSPPNSTTELVTHHVHLVDRNRKRELLTHL- 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                   +  ++F   K     L   L K G    AIHGN  Q +R + LS FK+G+++
Sbjct: 243 --VESRQWQQVLVFTRTKHGANRLAEVLAKGGIPAAAIHGNKSQGARTRALSEFKDGSLR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++  V N+++PN  E+Y+HRIGRTGRAG  G+A +LV  +++K +
Sbjct: 301 VLVATDIAARGIDISELPQVVNYELPNVPEDYVHRIGRTGRAGSPGEAVSLVCVDELKLL 360

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
             IE  I + +      G  + L+ P + +   +H   R++        G  R ++N   
Sbjct: 361 ADIEAFIGRPIPQFTEPGFEADLSVPPQPLLPPRHQQGRQDGE-----GGEPRGQRN--K 413

Query: 416 QKSHIPLKESEKISKLQQDIQEND-------ADSLGFRGNMPAFMLPKNRGK 460
           +K H           L  D  E+D       A++   R   PA   P   GK
Sbjct: 414 KKPHNKPARRADAPTLPMDAPEHDSGAPAPVAEAQPPRQRKPAPGQPNPAGK 465


>gi|323699639|ref|ZP_08111551.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. ND132]
 gi|323459571|gb|EGB15436.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
           ND132]
          Length = 369

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 142/369 (38%), Positives = 207/369 (56%), Gaps = 6/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+   L  +++  V D GY  PTPIQ + IPLVL+ HDV G+AQTGTGKTA+F LP+L
Sbjct: 1   MTFSTFSLDRRILAGVRDCGYETPTPIQEQAIPLVLKGHDVMGLAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G    R  P  L+L PTRELA Q+ +NF + G++  +    +IGG+    Q K  
Sbjct: 61  QRLLTGNKSGRALPSVLVLAPTRELALQIDENFNQLGRHTGIRCGAVIGGVGMNPQIKAF 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++ C    +    N    L +   + V+DEADRMLDMGF+P I+ I + +P  RQ
Sbjct: 121 SHCRVIVACPGRLVRLLNNGSVSLTHIDTL-VLDEADRMLDMGFMPDIKRILAKLPARRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  +++K++EN L +PK ++V             +     + S+    L    
Sbjct: 180 NLLFSATMPQDIRKLAENILNDPKTVQVANTQPVESVEHSFYATENNRKSELLTKLLDRA 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +     ++ ++F   K    NL   L   G++   + GN+ Q  R + L  F++G+  +M
Sbjct: 240 EH----QSVLVFTKTKHKAKNLARKLAGSGYNATFLQGNMSQNQRQRALDGFRDGSYDIM 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D   + HV NFD+P+  E Y HRIGRTGRAGR G A +LV  ED   +  
Sbjct: 296 VATDIAARGIDCERISHVINFDMPDTVETYTHRIGRTGRAGRSGHAVSLVTGEDKTQVRD 355

Query: 360 IEKLIEKKV 368
           IE+++  K+
Sbjct: 356 IERVMRVKL 364


>gi|300692445|ref|YP_003753440.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum PSI07]
 gi|299079505|emb|CBJ52183.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum PSI07]
          Length = 549

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 167/444 (37%), Positives = 253/444 (56%), Gaps = 23/444 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY +PTPIQ + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 61  TI--------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                     +          R L+L PTRELAAQV ++   YGK   L   ++ GG+  
Sbjct: 61  HRLSAVQPNKVHTSHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q   L+RG D+++ TPGR+LDH  +  + +++IE+LV+DEADRMLDMGFI  I+ I +
Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           ++P  RQ LLFSAT +D+++ +++  L  P  IEV   ++TAET+E        +  ++ 
Sbjct: 181 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKREL 240

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                 L   +     ++F   K     L   L + G    AIHGN  Q +R + LS FK
Sbjct: 241 ---LAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALSEFK 297

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT++++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  +
Sbjct: 298 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 357

Query: 353 DIKHIDAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           +   +  IE+LI++++    L G         E I      + R +   P++  G +++ 
Sbjct: 358 EHGLLRDIERLIKRELPRTVLPGFEPDPTIAPEPIP-----NGRNSARSPRQGGGRNQQP 412

Query: 411 K-----NYSSQKSHIPLKESEKIS 429
           +     N + ++   P +   + S
Sbjct: 413 RQAAAGNAAPREPRAPREPRRESS 436


>gi|114330892|ref|YP_747114.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas
           eutropha C91]
 gi|114307906|gb|ABI59149.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91]
          Length = 455

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 177/446 (39%), Positives = 256/446 (57%), Gaps = 22/446 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F +L L P +V AVL AGY  PTPIQ + IP ++  HDV   AQTGTGKTA+F+LP +
Sbjct: 1   MSFENLNLHPAIVKAVLAAGYTSPTPIQQQAIPELIAGHDVMASAQTGTGKTAAFMLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKK 118
             +    + + R PR L+L PTRELA QV++   KYGK       + I GG+P+  QNK 
Sbjct: 61  HRLATPAKIQGRGPRILVLTPTRELALQVSEAASKYGKFLPRVNVVSILGGMPYPLQNKL 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  DVL+ TPGR++DH  RG++  + +E+LV+DEADRMLDMGFI  ++ I S  P  R
Sbjct: 121 LSQVVDVLVATPGRLIDHIERGRIDFSRLEMLVLDEADRMLDMGFIHDVERIASSTPTNR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+   ++K++   L+ PKRI++ +  +  + IE           K    L   
Sbjct: 181 QTLLFSATLDTAIEKIATRLLKMPKRIQIASQHAKLDHIEQRMHYVDDLTHKNR--LLDH 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L    T+K  I+F   K++  +L  +L  QG    A+HG++ QR R + L+  ++G +++
Sbjct: 239 LLCDTTIKQAIVFTATKRDADSLADNLSAQGHKAAAMHGDMTQRERTRTLTGLRQGRLKI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI D+ HV NFD+P  AE+Y+HRIGRTGRAG  G A +  + +D  H+ 
Sbjct: 299 LVATDVAARGIDIADITHVINFDLPKFAEDYVHRIGRTGRAGASGIAVSFASGKDGIHLK 358

Query: 359 AIEKLIEKKVDW--LNGDLSSLNPPLEKID--------IAQHNHARK-NNPIPQKST--G 405
            IE+      ++  + G      P   + D         A H   R   N    ++T  G
Sbjct: 359 RIERFTGNHFEFQVVPGMEPRTKPRFSRNDDKSGKRPSSAAHKTRRSWPNDASTRTTAQG 418

Query: 406 FDRRKKNYSSQ-----KSHIPLKESE 426
           F   KK+  SQ         PL++S+
Sbjct: 419 FRGDKKSEFSQPFARDTRRRPLRDSK 444


>gi|326502382|dbj|BAJ95254.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 412

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G+   ++  + D G+ KP+ IQ + +  ++   DV   AQ+GTGKT+   L +  
Sbjct: 40  SFDAMGIREDLLRGIYDYGFEKPSAIQQRAVIPIITGRDVIAQAQSGTGKTSMISLSVCQ 99

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E     V+    LIL PTRELA Q     +  G   +++V   +GG       +KLE 
Sbjct: 100 VIETNVHEVQA---LILSPTRELATQTERVMQAVGSFMSVSVHACVGGKSIGEDIRKLES 156

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML  GF   I ++   +P   Q +
Sbjct: 157 GVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDEADEMLSRGFKDQIYDVYRYLPPELQVV 216

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  ++ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 217 LISATLPHDILEITSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL--YD 274

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   +    F+V A+HG++ Q+ R  I++ F+ GT ++++ 
Sbjct: 275 TLTITQAVIFCNTKRKVDWLTERMRTNNFTVSAMHGDMPQKERDAIMNEFRGGTTRVLIT 334

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V K+DI+ +  IE
Sbjct: 335 TDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRKDDIRILRDIE 394

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 395 QYYSTQIDEMPMNVADL 411


>gi|315126148|ref|YP_004068151.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           sp. SM9913]
 gi|315014662|gb|ADT68000.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           sp. SM9913]
          Length = 607

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 161/479 (33%), Positives = 261/479 (54%), Gaps = 28/479 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L LSP ++ AV + GY  P+ IQ + IPL+L+R DV G+AQTGTGKTA+F LP+L
Sbjct: 5   VTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++     V+ P+ L+L PTRELA QVA+ FE+Y K+      L +  G  +  Q   L
Sbjct: 65  NNIDPS---VKQPQILVLTPTRELAIQVAEAFEQYAKHTRGVEVLALYGGQSYSIQLSAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR++DH NRG +  + ++ LV+DEAD ML MGFI  ++NI    P  +Q
Sbjct: 122 RRGAQIIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVENIMEKTPREKQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM  ++Q +S  ++ NP+++ ++  +ST  ++E  F   +   +K      +  
Sbjct: 182 TCLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNAHVHKNKAIVRFLEAE 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q     +  I+F   + + V L   LE++GFS   ++G+++Q++R + +   K G + ++
Sbjct: 242 QY----EGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNVV 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  +E Y+HRIGRTGRAGR GKA   V   +   +  
Sbjct: 298 IATDVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKN 357

Query: 360 IEKLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNH------------ARKNNPIPQ 401
           I +  + ++  +        +   +N   EK+ +A  N             A+K    P+
Sbjct: 358 IIRHTKSEIAQVELPTAKVVEEKRINALQEKLTLALENKDITFFNEVAANMAQKLELAPE 417

Query: 402 KSTGFDRRKKNYSS--QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
              G         S  +   + ++  E+  +  ++ + ND      RG   A   P+ R
Sbjct: 418 DLAGALLCLAQQQSPIKVEEVKIQPRERNERNDRNPRSNDRGRRNERGGERAERKPRER 476


>gi|197284517|ref|YP_002150389.1| ATP-dependent RNA helicase [Proteus mirabilis HI4320]
 gi|194682004|emb|CAR41470.1| putative ATP-dependent RNA helicase [Proteus mirabilis HI4320]
          Length = 465

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 168/452 (37%), Positives = 249/452 (55%), Gaps = 15/452 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGLS  ++ A+ + GY  PTPIQ + I  +L   DV   AQTGTGKTA+F LP+L 
Sbjct: 3   DFTSLGLSEALLRAIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPILE 62

Query: 62  ILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L     +    +  + LIL PTRELAAQ+ADN + Y +   +   ++ GG+    Q  K
Sbjct: 63  KLATSAEKTKGRKPVKALILTPTRELAAQIADNVKAYSRYLPIRSLVVFGGVSINPQMMK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G DVLI TPGR+LD  ++  + ++ +E+LV+DEADRMLDMGFI  I+ + + +P  R
Sbjct: 123 LRGGVDVLIATPGRLLDLEHQNAVDLSRVEVLVLDEADRMLDMGFIHDIRRVINKLPKKR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT + E+  ++ + L NP  I V   +S AE++       +    K+   L   
Sbjct: 183 QNLLFSATFSKEITGLANSLLNNPISIAVAPKNSAAESV---DQYVHLVDKKRKTELLSH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   +     +IF   K     L   L   G    AIHGN  Q +R + L++FK+G ++ 
Sbjct: 240 LIGLENWPQVLIFTRTKHGANKLAEHLNLDGIKSAAIHGNKSQGARTRALADFKDGKLKA 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + +V NF++P  AE+Y+HRIGRTGRA   GKA +LV  ++   + 
Sbjct: 300 LVATDIAARGLDIDQLPYVVNFELPQVAEDYVHRIGRTGRAAATGKAISLVCVDEHGLLA 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLE--KIDIAQHNHARKNNP-------IPQKSTGFDRR 409
            IE+L+++++  L  +    +P ++   +     N AR N         I  K      R
Sbjct: 360 DIERLLKREIPRLALEGYDPDPSIKAAPLHKKPKNKARNNKEGGHGRADIRGKDNRHTPR 419

Query: 410 KKNYSSQKSHIPLKESEKISKLQQDIQENDAD 441
            KN  +QK     +  +  SK  +  +++D D
Sbjct: 420 NKNSRNQKESETGEIKQNKSKPARRSRKHDDD 451


>gi|188591276|ref|YP_001795876.1| ATP-dependent RNA helicase hydrolase [Cupriavidus taiwanensis LMG
           19424]
 gi|170938170|emb|CAP63156.1| ATP-dependent RNA helicase hydrolase [Cupriavidus taiwanensis LMG
           19424]
          Length = 516

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 166/398 (41%), Positives = 243/398 (61%), Gaps = 17/398 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY  PTPIQ + IP +L+  D+   AQTGTGKTA F LPML
Sbjct: 1   MSFSELGLSEKIVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRARVRMPRTL---------ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
            +L +  AR                +L PTRELAAQV ++   YGK   L   ++ GG+ 
Sbjct: 61  QLLSETAARQAGGAQRGGRVAVRALVLTPTRELAAQVEESVRNYGKYLRLRSMVMFGGVG 120

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q ++L+RG ++++ TPGR+LDH ++  + ++ +E+LV+DEADRMLDMGFI  I+ I 
Sbjct: 121 INPQIEQLKRGVEIVVATPGRLLDHVSQRTIDLSQVELLVLDEADRMLDMGFIHDIRKIL 180

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +++P  RQ LLFSAT +D+++ +++  L NP  IEV   ++TAET++        +  ++
Sbjct: 181 NVLPAKRQNLLFSATFSDDIRALADRLLNNPASIEVARRNTTAETVDQRVYPVDRERKRE 240

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                  L  Q      ++F   K     L   L K G S  AIHGN  Q +R + LS F
Sbjct: 241 L---LAHLVRQHDWHQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEF 297

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K GT++L+VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  
Sbjct: 298 KAGTLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCV 357

Query: 352 EDIKHIDAIEKLIEKKVDW-----LNGDLSSLNPPLEK 384
           +++  +  IE+LI++K++         D S    P++K
Sbjct: 358 DELGLLRDIERLIKRKLEQTVLPGFEVDPSIAPEPIQK 395


>gi|110799701|ref|YP_695305.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens ATCC
           13124]
 gi|168209167|ref|ZP_02634792.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens B str.
           ATCC 3626]
 gi|110674348|gb|ABG83335.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens ATCC
           13124]
 gi|170712632|gb|EDT24814.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens B str.
           ATCC 3626]
          Length = 478

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 133/420 (31%), Positives = 229/420 (54%), Gaps = 6/420 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ A+ + GY  P+ +Q  +IP +L+  D+   +QTG+GKTASF +P+ 
Sbjct: 1   MKFNELNLSDDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVC 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +V+    L+L PTRELA QV D     G+   +  A + G  PF  Q ++L+
Sbjct: 61  EKINIEEKKVQC---LVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIRELK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+ DH  RG L ++ +  +VIDEAD+ML MGFI  I++I   +   + T
Sbjct: 118 QRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT + E++++ E +++NP  +EV +     + IE    +      K          
Sbjct: 178 ALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEE---SAIEIEEKNKGKALWKCL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ I+FCN +  V ++   L+ +G +   +HG+++Q+ R++++ NF++   +++V
Sbjct: 235 YSYHPESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ +  +  V N++VP   E+Y+HRIGRTGRAGR GKA T V   + K+++ +
Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+ I  ++   +           KI         K +  P+K    D  K + +  K   
Sbjct: 355 EEYIGYEIRKASLPSDEEVKAGRKIFKESQKVQLKESKKPKKEVHVDIVKIHVNGGKKKK 414


>gi|82702922|ref|YP_412488.1| DEAD/DEAH box helicase-like [Nitrosospira multiformis ATCC 25196]
 gi|82410987|gb|ABB75096.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
           25196]
          Length = 472

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 169/433 (39%), Positives = 247/433 (57%), Gaps = 14/433 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F  L L P ++ A+ DAGY  PTPIQ + IP +L  HDV   AQTGTGKTA+F+LP +
Sbjct: 1   MSFESLNLHPLILKAINDAGYTSPTPIQEQAIPELLTGHDVLASAQTGTGKTAAFMLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
             +    + R R PR L+L PTRELA QV++   KYGK      V  ++GG+P+  QNK 
Sbjct: 61  HRLASPSQVRSRGPRVLVLTPTRELALQVSEATAKYGKYLPRAKVVSILGGMPYPLQNKL 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+L+ TPGR++DH  RG++  + +E+LV+DEADRMLDMGFI  ++ I S  P TR
Sbjct: 121 LSQVVDILVATPGRLIDHIQRGRIDFSRLEMLVLDEADRMLDMGFIEDVERIASATPATR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+   +  V+   L +PKRI+V T  +    IE           K    L   
Sbjct: 181 QTLLFSATLDSAMDNVAARLLNSPKRIQVATSKARLNNIEQRLHYVDDISHK--NQLLDH 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L     +K  I+F   K++   L   L  QG +  A+HG++ QR R + L   ++G I++
Sbjct: 239 LLRDIELKQAIVFTATKRDADMLADGLSAQGHAAAALHGDMSQRDRNRTLIKLRQGGIRV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + HV NFD+P  AE+Y+HRIGRTGRAG  G A +  + +D  H+ 
Sbjct: 299 LVATDVAARGIDVAGITHVINFDLPKFAEDYVHRIGRTGRAGASGIAVSFASSKDGIHLK 358

Query: 359 AIEKLIEKKV--DWLNGDLSSLNP-------PLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            IE+   +++    + G      P       P     +A       ++ +P +S+ + R 
Sbjct: 359 KIERFTGQRIASHVVPGLEPRAKPRPGASAQPRSTPSVAHKRSRTWSSDVPHRSSAY-RS 417

Query: 410 KKNYSSQKSHIPL 422
             ++ + +S  P 
Sbjct: 418 DGDWKAGQSRSPA 430


>gi|217973506|ref|YP_002358257.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217498641|gb|ACK46834.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 467

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 162/455 (35%), Positives = 251/455 (55%), Gaps = 14/455 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F+ LGLS  ++ A+ + GY +PTPIQ K IP++L+  ++   AQTGTGKTASFVLP+ 
Sbjct: 1   MPFSKLGLSDPILRAITELGYSQPTPIQEKAIPVILKGKNLLAGAQTGTGKTASFVLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +  + R +  R LIL PTRELA QV DN  KY K   LT   + GG+    Q ++L
Sbjct: 61  QMFADMPKIRAKRVRALILTPTRELAVQVEDNIAKYAKYLPLTSMAMYGGVDAAPQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + I +LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDEISVLVLDEADRMLDMGFIEDINKIIERLPTERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++ +++  ++NP  IE+   S+ A  I+   +                 
Sbjct: 181 NLLFSATLSKQVRFLAKTAVENPVEIEIARDSANAPQIDQWLITVDKDKKSALLSKL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  +IF   K+    L   LEK+G +  AIH    Q  R ++L +FK G ++ +
Sbjct: 238 ITEQAWEQALIFIQTKQGAAKLVSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGKLRFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +A+RG+DI  +  V N+D+P+ A++YIHRIGRTGRAG  G+A + V+K+D +++ A
Sbjct: 298 VATGVASRGIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGACGEAISFVSKDDFRNLCA 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE+ +   +    + G + +   P+  +D    N   K            R  K  S + 
Sbjct: 358 IERRLGHIIVRKEIEGFVPNKEVPVSILDFVPKNTTPKTFKARAPEARTSRPAKEGSFET 417

Query: 418 SHIPLKESEK--------ISKLQQDIQENDADSLG 444
           +H     S K        +++ Q    EN +++ G
Sbjct: 418 AHAKKHRSAKSKPEAKAAVARPQSAQTENSSEATG 452


>gi|119899811|ref|YP_935024.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
 gi|119672224|emb|CAL96138.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
          Length = 537

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 163/377 (43%), Positives = 227/377 (60%), Gaps = 6/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LGL+  ++ A+ D GY  PTPIQ K IPLVL   D+   AQTGTGKTA F LP+L
Sbjct: 5   LTFASLGLAEPLLRAISDTGYTTPTPIQAKAIPLVLAGGDLLAAAQTGTGKTAGFTLPVL 64

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                          PR LIL PTRELAAQV ++ + YGK+  LT  ++ GG+    Q  
Sbjct: 65  HKLAATHVHPHPAGKPRCLILTPTRELAAQVEESVQTYGKHLALTSMVMFGGVNINPQIS 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++  D+L+ TPGR+LDH  +  L ++ +EILV+DEADRMLDMGFI  I+ + +L+P  
Sbjct: 125 ALKKRVDILVATPGRLLDHVGQKTLDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E +E           K+   L  
Sbjct: 185 RQNLLFSATFSDEIRDLANGLLHNPGCVEVAPRNTASERVEQTVYMIGQ---KQKRELLA 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +      ++F   K     L   L K      AIHGN  Q +R + LS FK+G++ 
Sbjct: 242 WLIKEKQWFQALVFTRTKHGANKLAEYLTKHDIPAAAIHGNKSQSARTRALSQFKDGSLP 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV  E++K +
Sbjct: 302 VLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGADGNAISLVDGEEVKLL 361

Query: 358 DAIEKLIEKKVDWLNGD 374
            AIE+LI +K+D    +
Sbjct: 362 TAIERLIRRKIDRATAE 378


>gi|307352826|ref|YP_003893877.1| DEAD/DEAH box helicase domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307156059|gb|ADN35439.1| DEAD/DEAH box helicase domain protein [Methanoplanus petrolearius
           DSM 11571]
          Length = 536

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 140/369 (37%), Positives = 225/369 (60%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L +SP+++ A+ D G+ +PTPIQ ++IPL+L   DV G AQTGTGKTA+F +P++
Sbjct: 5   LKFNELNISPEILRAIEDMGFEEPTPIQQRSIPLILSGRDVTGQAQTGTGKTAAFAIPLI 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             +E  +  V+     +L PTREL  Q+++ F +  K       L +  G   E Q  +L
Sbjct: 65  EKIEPEKCSVQSI---VLSPTRELTIQISEEFNRLLKYRKDIRVLPVYGGQAIERQLHEL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G  ++I TPGR++DH  RG L ++ I+ +V+DEAD+ML+MGF   ++ I S  P  RQ
Sbjct: 122 KKGVHIIIGTPGRVMDHMKRGTLSLSGIKTVVLDEADQMLEMGFREDMEEILSKAPGERQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + K+S++F + P+ + +N    T   I            K    +   L
Sbjct: 182 TILFSATMPKPILKISKSFQKKPEFVTINPGQLTVPLI---EQKYLEVREKDKLEVLCRL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              ++    +IFCN KK V  L   L  +G+    +HG++ Q+ R +++S F+ G+I ++
Sbjct: 239 IDINSSDLSMIFCNTKKAVDELSEMLRSRGYFAEGLHGDMKQQQRDRVMSRFRSGSIDIL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI D+  V+N+DVP   E YIHRIGRTGRAG+ G ++T V+ ++I  +  
Sbjct: 299 IATDVAARGIDIDDIDVVYNYDVPQDVEYYIHRIGRTGRAGKSGMSYTFVSPKEIYKLRM 358

Query: 360 IEKLIEKKV 368
           I+K+ +  +
Sbjct: 359 IKKIAKVNI 367


>gi|258623163|ref|ZP_05718173.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM573]
 gi|258584555|gb|EEW09294.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM573]
          Length = 663

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 148/463 (31%), Positives = 240/463 (51%), Gaps = 35/463 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 26  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N      L I  G     Q + L
Sbjct: 86  NKLNLSQHK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 142

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 143 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 202

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL+NP+ ++V   + T   +E  +         +        
Sbjct: 203 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLET 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 263 EET---DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 320 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 379

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE++    ++ +        P  +K+  ++                  +  +  ++ K H
Sbjct: 380 IERVTRSSMEEIQ------LPHRDKVAESR----------------LTKLGQELAADKEH 417

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
             L+    + +  Q   E D+ +L       A +L + +GK  
Sbjct: 418 SSLERFADLVEKLQASLEIDSTTLA------AILLKRQQGKRP 454


>gi|170760570|ref|YP_001788120.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169407559|gb|ACA55970.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 524

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 140/383 (36%), Positives = 223/383 (58%), Gaps = 5/383 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L L+  V+ A+   G+  P+ IQ K+IP+VL+  DV   AQTGTGKT +F  P+++
Sbjct: 5   NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +  + L+L PTRELA Q+ D  ++  K     V  + GG   E Q K ++ 
Sbjct: 65  SL-CDNEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKS 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGRILDH NR  L +  I+ L++DEAD ML+MGFI  I+ I    P  +QT+
Sbjct: 124 GVDIVVGTPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTPEEKQTM 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K++ N+++           S                 K  A+ +  +  
Sbjct: 184 LFSATMPAAIKKLALNYMKEDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICR--IID 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  ++ IIFC  K+ V  L  +++ +G++V  +HG++ Q  R+  L  FK+ T+  +VA
Sbjct: 242 SEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ ++ HV N+D+P  AE+Y+HRIGRTGRA + G A++LV   ++  I  IE
Sbjct: 302 TDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIE 361

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
           ++ + K+     +L +L   LEK
Sbjct: 362 RITKSKIT--KKELPTLEDILEK 382


>gi|167617991|ref|ZP_02386622.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
          Length = 435

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 162/392 (41%), Positives = 233/392 (59%), Gaps = 9/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                   + R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRGARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            ++     
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKNCTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKID 386
           +  IE+LI++++  + + G     N   E I 
Sbjct: 358 LRDIERLIKREISQEVIPGFEPDPNAKPEPIQ 389


>gi|83719171|ref|YP_441164.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
 gi|257140174|ref|ZP_05588436.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
 gi|83652996|gb|ABC37059.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
          Length = 482

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 162/392 (41%), Positives = 233/392 (59%), Gaps = 9/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                   + R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRGARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            ++     
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKNCTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKID 386
           +  IE+LI++++  + + G     N   E I 
Sbjct: 358 LRDIERLIKREISQEVIPGFEPDPNAKPEPIQ 389


>gi|82705769|ref|XP_727104.1| eukaryotic initiation factor 4a-3 [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23482794|gb|EAA18669.1| eukaryotic initiation factor 4a-3 [Plasmodium yoelii yoelii]
          Length = 390

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 193/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G+   ++  +   G+ KP+ IQ + I  +L   DV   +Q+GTGKT  F +  L 
Sbjct: 18  SFESIGIDEGLLRGIYAYGFEKPSAIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGALN 77

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + +  +  ++    IL PTRELA Q            ++TV   IGG       K L  
Sbjct: 78  CVNRNISETQVI---ILSPTRELAEQTQKVCLALADYIHVTVYCCIGGKKMSEDIKALNN 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGRI    N   L    I+ LVIDEAD ML+ GF   + +I   +    Q +
Sbjct: 135 GVHIISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPNTQIV 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ NP +I V     T E I+  FV+   +  K        L  
Sbjct: 195 LSSATLPHEVLEITNKFMHNPVKILVKRDELTLEGIKQFFVSIEKEQWKYET--LADLYE 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   ++FCN K  V  L   +++  F+VC +H  + Q  R  I+  F++   +++++
Sbjct: 253 SLTITQAVVFCNTKLKVDWLAKKMQESNFTVCKMHAGMSQSERDDIMLKFRQCKYRVLIS 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+  RGLD+ +V  V N+D+PN  E+YIHRIGR+GR GR G A   V  +DIK +  IE
Sbjct: 313 TDIWGRGLDVHEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIE 372

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 373 QFYSTQIDEMPMNITEL 389


>gi|295425677|ref|ZP_06818364.1| RNA helicase DeaD [Lactobacillus amylolyticus DSM 11664]
 gi|295064693|gb|EFG55614.1| RNA helicase DeaD [Lactobacillus amylolyticus DSM 11664]
          Length = 493

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 148/396 (37%), Positives = 229/396 (57%), Gaps = 16/396 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+  ++ A+  +G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFLELGLNEDLLKAIKRSGFEEATPIQAETIPLALAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-L 119
             L+K    ++     I+EPTRELA Q  +   + G++ +  V ++ GG     Q +   
Sbjct: 61  QNLDKHEKTIQAV---IIEPTRELAIQTQEELFRLGRDEHARVQVVYGGADIGRQIRSLK 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LDH  RG + ++  + +V+DEAD MLDMGFI  I++I   V   +Q
Sbjct: 118 HHVPAILVGTPGRLLDHLKRGTIDLSKTKTVVLDEADEMLDMGFIQDIESILKYVGERKQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + ++ E F+ +P+ +++     TA+ I+  FV                 
Sbjct: 178 TLLFSATMPKPILQIGEKFMHDPEVVKIKAKELTADLIDQYFVRAKESEKFDIMCRL--- 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++F   K+ V  L   L+ +G++   IHG++ Q  RM +L  F+ G ++++
Sbjct: 235 IDVQGPDLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKQFRAGKLEIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEISYMQT 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           IE+L +KK       +S L PP +  D A H   ++
Sbjct: 355 IEQLTKKK-------MSPLRPPTD--DQALHGQLKQ 381


>gi|170755466|ref|YP_001781330.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum B1 str.
           Okra]
 gi|169120678|gb|ACA44514.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B1 str.
           Okra]
          Length = 481

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 137/430 (31%), Positives = 239/430 (55%), Gaps = 15/430 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  LS +++ ++   GY  P+ +Q + IPL+L+  D+   ++TG+GKTA+F +P+ 
Sbjct: 4   LTFENYKLSDEILKSLGKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPVC 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE      + P+ L+L PTRELA Q+ +          L    + G  P   Q ++L+
Sbjct: 64  EKLEL---EEKDPQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRELK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR LDH  R  L +  I+  V+DEAD ML+MGFI  ++ +   +P  R T
Sbjct: 121 QRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRVT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ ++++ + + ++ NP+ I +N  + T +TI       Y    K    L Q + 
Sbjct: 181 MLFSATIPEKIENLCKKYMNNPQNININPENITTDTINQ---CYYEVEDKDKFSLLQKII 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++ + N IIFCN ++ V  +  +++K+G +   +HG ++Q+ R++ +  FKEG  Q +V
Sbjct: 238 YKEVVDNSIIFCNTREKVDEVLKNMKKKGLNAVGLHGGMEQKDRLETMKKFKEGEFQFLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ I ++ HV N+++P   E+Y+HRIGRTGRAG+ G A T +    +  ++ I
Sbjct: 298 CTDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVIFLEDI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK-NNPIPQKSTGFDRRKKNYSSQKSH 419
           E  IEK++           P  E++D  +        N I  K    ++++K+ +  K +
Sbjct: 358 EDYIEKEIPKRK------EPSSEEVDKGKKIFEENIKNRIKTKVPKNNKKQKDIT--KIY 409

Query: 420 IPLKESEKIS 429
           I     +KI 
Sbjct: 410 ISAGRKKKIR 419


>gi|37525462|ref|NP_928806.1| ATP-dependent RNA helicase RhlE [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784890|emb|CAE13804.1| ATP-dependent RNA helicase RhlE [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 434

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 165/426 (38%), Positives = 243/426 (57%), Gaps = 8/426 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LGLS  ++ AV + GY  PTPIQ + IP+VL   D+   AQTGTGKTA F LPML
Sbjct: 7   MNFKSLGLSADILRAVEEQGYSAPTPIQQQAIPVVLAGKDLLASAQTGTGKTAGFTLPML 66

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L     ++   R  R LIL PTRELAAQV +N   Y K   L   ++ GG+    Q  
Sbjct: 67  QRLNDSPIQMKGRRPVRALILTPTRELAAQVGENVRDYSKYLRLRSLVVFGGVSINPQMM 126

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 127 KLRGGVDILVATPGRLLDLEHQNAVDLSRVEILVLDEADRMLDMGFIHDIRRVLNKLPPK 186

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++   L++P  +EV   +S +E I       +    K+   L  
Sbjct: 187 RQNLLFSATFSDDIKSLASKLLRDPVSVEVARRNSASEQI---EQLVHFVDKKRKGELLS 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L      +  ++F   K     L   L K G +  AIHGN  Q +R + L++FK+G I+
Sbjct: 244 FLIGSRNWQQVLVFTRTKHGANRLAEQLNKDGVTASAIHGNKSQGARTRALADFKDGRIR 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + +V NF++PN AE+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 304 VLVATDIAARGLDIDQLPYVVNFELPNVAEDYVHRIGRTGRADATGQALSLVCVDEHKLL 363

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
             IE+L+++++  +   G         E I   +            + +G   R+++ S 
Sbjct: 364 KDIERLLKREIPRMAIPGYEPDPTIKAEPIQNGRQARGDNRQKNSHRRSGAPSRQRSSSH 423

Query: 416 QKSHIP 421
             SH  
Sbjct: 424 DVSHKS 429


>gi|303251782|ref|ZP_07337953.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307249083|ref|ZP_07531090.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302649212|gb|EFL79397.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306854371|gb|EFM86567.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 445

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 143/439 (32%), Positives = 230/439 (52%), Gaps = 11/439 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F +L L+P+++ A+   GY +PT +Q +TIP  L   D+ G A TGTGKTA+F+LP +
Sbjct: 8   MTFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAI 67

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QVA+  + + +   L++A + GGI ++   +  
Sbjct: 68  QHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGIAYQNHGEVF 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR++ +          +EIL+ DEADRML MGF    + I +   + + 
Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT+  EL     + + +     ++   S  E  +      +A   +    L   L
Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLK-IDAEPSRRERKKIQQWYYHADNVEHKTKLLARL 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S   M+  I+F  ++++V  L  +L K+G     + G++ Q  R + ++  KEG + ++
Sbjct: 247 ISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAITRLKEGVVNVL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI DV +V NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D K +  
Sbjct: 307 VATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGK 366

Query: 360 IEKLIEK--KVDWLNGDLSSLNPPLE-------KIDIAQHNHARKNNPIPQKSTGFDRRK 410
           I++  E+  K   + G       P +       K + A+    ++      K+    R K
Sbjct: 367 IKRYTEELLKPRVIEGLEPRTKAPKDGELNTTTKKEKARIKKRKEAKKEAAKAKVKVRHK 426

Query: 411 KNYSSQKSHIPLKESEKIS 429
              +  K   P  E+ K +
Sbjct: 427 DTKNVGKRRKPASEAAKSA 445


>gi|325142563|gb|EGC64962.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           961-5945]
 gi|325198512|gb|ADY93968.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           G2136]
          Length = 462

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 159/455 (34%), Positives = 238/455 (52%), Gaps = 14/455 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QKLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPTDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    ++P+ IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK I +K+  L  +      P  K   A      K     +KS G  RR  +   ++ 
Sbjct: 360 KIEKYINRKLPELTIE---GMEPTRKRKSAGGKPKGKGGWGDRKSGG--RRGDHKPGKEG 414

Query: 419 HIPLKESE--KISKLQQDIQENDADSLGFRGNMPA 451
                  E  K    ++D  +   +  GF+G   A
Sbjct: 415 FGGKTRGEGFKKEGFKKDGFKKTGE--GFKGKRKA 447


>gi|291409987|ref|XP_002721272.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Oryctolagus
           cuniculus]
          Length = 789

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 157/465 (33%), Positives = 244/465 (52%), Gaps = 23/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 212 LSFQDMNLSRPLLKAISAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 271

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++  +  ++T  L +GG+  ++Q   L 
Sbjct: 272 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALR 331

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +N+IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 332 AAPDILIATPGRLIDHLHNCPSFHLNSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 391

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 392 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 451

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    L   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 452 LTRTFTDHVMLFTQTKKQAHRLHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDVL 511

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K +  
Sbjct: 512 VATDVAARGLDIEGVKTVVNFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 571

Query: 360 IEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K  +                  K++ +  D+ ++     +    Q + A+ N      
Sbjct: 572 IVKAAKAPVKARILPQDVILRFRDKIEAMEKDVYAVLQLEAEEKAMQQSEAQINTAKRLL 631

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             G +   +    ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 632 EKGKEAPGQE--PERSWFQTKEERKKEKIAKALQEFD---LALRG 671


>gi|227501650|ref|ZP_03931699.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
 gi|306835824|ref|ZP_07468821.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
 gi|227077675|gb|EEI15638.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
 gi|304568298|gb|EFM43866.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
          Length = 623

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 147/383 (38%), Positives = 231/383 (60%), Gaps = 9/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  K++ AV   G+  P+PIQ +TIP++++  DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 57  FEHLGLPDKILQAVAKVGFTTPSPIQAETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQ 116

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLER 121
           L+    + R P+ L+L PTRELA QVAD F+ + +       L I G   +  Q   L R
Sbjct: 117 LDP---QARHPQALVLAPTRELALQVADAFQSFAETLKGIEVLPIYGGQAYGIQLSGLRR 173

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  +G L ++ ++ LV+DEAD ML+MGF   ++ I    P  +Q  
Sbjct: 174 GAQVIVGTPGRVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILESTPDRKQVA 233

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++S+ +L NP  + V +   T + I+  F+    +           + +
Sbjct: 234 LFSATMPNAIRRLSKQYLHNPAEVTVKSERRTNDNIKQRFLLIPHRAKMDAFTRILEVIT 293

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D +   I+FC  K     +  +L  +G+S  AI+G+I Q  R + +   K+G + ++VA
Sbjct: 294 YDAI---IVFCRTKHETEEVAEALRDRGYSAAAINGDIAQAQRERTVDQLKDGRLDILVA 350

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV NFD+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 351 TDVAARGLDVERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 410

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
           ++   +++ +  DL S++   EK
Sbjct: 411 RVTNARLEEM--DLPSVDEVNEK 431


>gi|115438787|ref|NP_001043673.1| Os01g0639100 [Oryza sativa Japonica Group]
 gi|75321708|sp|Q5VNM3|RH2_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 2
 gi|55297015|dbj|BAD68586.1| putative nicotiana eukaryotic translation initiation factor 4A
           [Oryza sativa Japonica Group]
 gi|55297606|dbj|BAD68952.1| putative nicotiana eukaryotic translation initiation factor 4A
           [Oryza sativa Japonica Group]
 gi|113533204|dbj|BAF05587.1| Os01g0639100 [Oryza sativa Japonica Group]
 gi|215707106|dbj|BAG93566.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222618929|gb|EEE55061.1| hypothetical protein OsJ_02769 [Oryza sativa Japonica Group]
          Length = 404

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 132/377 (35%), Positives = 199/377 (52%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G+   ++  +   G+ KP+ IQ + +  ++   DV   AQ+GTGKT+   L +  
Sbjct: 32  SFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQ 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I++     V+    LIL PTRELAAQ        G   N+ V   IGG       +KLE 
Sbjct: 92  IVDTAVREVQA---LILSPTRELAAQTERVMLAIGDFINIQVHACIGGKSIGEDIRKLEH 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++L++DEAD ML  GF   I ++   +P   Q  
Sbjct: 149 GVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQVC 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 209 LISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL--YD 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   +    F+V A+HG++ Q+ R  I+  F+ G  ++++ 
Sbjct: 267 TLTITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLIT 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V KEDI+ +  IE
Sbjct: 327 TDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILRDIE 386

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 387 QYYSTQIDEMPMNVADL 403


>gi|308810286|ref|XP_003082452.1| putative nicotiana eukaryotic (ISS) [Ostreococcus tauri]
 gi|116060920|emb|CAL57398.1| putative nicotiana eukaryotic (ISS) [Ostreococcus tauri]
          Length = 404

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 128/377 (33%), Positives = 205/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G+   ++  +   G+ KP+ IQ + +  ++   DV   AQ+GTGKT+   L +  
Sbjct: 32  TFDAMGIREDLLRGLYSYGFEKPSAIQQRAVVPIISGRDVIAQAQSGTGKTSMISLALCQ 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+     V+    L+L PTRELA Q        G   N+ V   IGG       +KL+ 
Sbjct: 92  MLDTTSREVQG---LVLSPTRELAVQTEKTALALGNFMNVQVHACIGGRSIGEDIRKLDY 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L    I+ILV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 149 GCHIVSGTPGRVFDMIKRRNLRTRGIKILVLDEADEMLNKGFKEQIYDVYRYLPPETQVV 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+ +E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 209 LVSATLPNEVLEMTGKFMTDPLRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN KK V  L   + +  F+V A+HG++ Q+ R +I++ F+ GT ++++ 
Sbjct: 267 TLTITQAVIFCNTKKKVDWLTEKMRQNNFTVSAMHGDMPQKEREEIMNEFRGGTTRVLIT 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V +ED++ +  IE
Sbjct: 327 TDMWARGIDVQQVSLVINYDLPGNRENYIHRIGRSGRYGRKGVAINFVKEEDVRALRDIE 386

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ +
Sbjct: 387 QYYSTQIDEMPMNVADM 403


>gi|315634792|ref|ZP_07890074.1| ATP-dependent RNA helicase DeaD [Aggregatibacter segnis ATCC 33393]
 gi|315476344|gb|EFU67094.1| ATP-dependent RNA helicase DeaD [Aggregatibacter segnis ATCC 33393]
          Length = 600

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 136/373 (36%), Positives = 221/373 (59%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL   ++ AV D G+  P+PIQ   IP +L+  DV G+AQTG+GKTA+F LP+L
Sbjct: 6   MTFKDLGLPEFILNAVSDLGFETPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFSLPIL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E++ K       + +  G  ++ Q + L
Sbjct: 66  AQIDPTE---KHPQLLVMAPTRELAIQVADACEQFVKYAKGINIVTLYGGQRYDIQLRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  RG L +  ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 KQGAQVVVGTPGRILDHLRRGTLSLAELKAIVLDEADEMLRMGFIDDVETVMAELPEHHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+++P+ +++     +A  I       +              
Sbjct: 183 TALFSATMPEPIRRITKRFMKDPQEVKIKATQQSAPDIAQSCWYVHGVRKNDA---LLRF 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 240 LEVEDFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSLDIV 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 300 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359

Query: 360 IEKLIEKKVDWLN 372
           +E LI+K ++ + 
Sbjct: 360 VEHLIKKNIEEVE 372


>gi|302388236|ref|YP_003824058.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
 gi|302198864|gb|ADL06435.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
           WM1]
          Length = 471

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 147/444 (33%), Positives = 244/444 (54%), Gaps = 16/444 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL + P ++ A+    Y+ PTPIQ + IP++L   D+ G AQTGTGKTA+F +P +
Sbjct: 1   MQFKDLNIIPDIIKALEKESYLIPTPIQEEAIPVILSGRDLLGCAQTGTGKTAAFAIPTI 60

Query: 61  T---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 ++     +  R LI+ PTRELA Q+ ++F  YGK  +L   ++ GG+  + Q +
Sbjct: 61  QLLREEKESHGAKQNIRALIVTPTRELALQIYESFNTYGKFTDLKCCVVFGGVSQKPQEE 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL++  D+L+ TPGR+L   ++  + +++I+IL++DEADRMLDMGFI  ++ I +  P  
Sbjct: 121 KLKQRVDILVATPGRLLALIDQKIVNIDHIKILILDEADRMLDMGFIHDVKKIIARTPLK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTLLFSATM  ++ K++   L+ P +IE+   SST +TI            K       
Sbjct: 181 KQTLLFSATMPPDIAKLAGTILKAPAKIEITPVSSTVDTIGQYVYFVDKSNKKDL---LL 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   + + + ++F   K     L   L +      AIHG+  Q +R   L+NFK  +++
Sbjct: 238 HVLKDNNIVSALVFTRTKHGADRLNKQLSRNNVIAQAIHGDKSQGARQSALNNFKNKSLR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARG+DI ++ HV N+D+P+  E Y+HRIGRTGRAG  G A +    ++ + +
Sbjct: 298 ILIATDIAARGIDIDELTHVINYDLPDIPETYVHRIGRTGRAGLGGTAISFCDYDEKEQL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           + IE+LI KK+  +      L   +  I   Q          P++      + K    ++
Sbjct: 358 NDIERLIGKKITEIKDHPYPLKNNVPGIKAVQ----------PRREAAKTEKTKAKHPER 407

Query: 418 SHIPLKESEKISKLQQDIQENDAD 441
           + +  K S + + L+  +      
Sbjct: 408 AFLKSKASLQTASLKPGVSSKREP 431


>gi|145631096|ref|ZP_01786871.1| preprotein translocase subunit SecF [Haemophilus influenzae R3021]
 gi|144983381|gb|EDJ90863.1| preprotein translocase subunit SecF [Haemophilus influenzae R3021]
          Length = 614

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 140/405 (34%), Positives = 232/405 (57%), Gaps = 20/405 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 5   ITFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E++ K  +   +  L GG  ++ Q + L
Sbjct: 65  AQIDPSE---KHPQMLVMAPTRELAIQVADACEQFVKYAHGTRIVTLYGGQRYDIQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 122 KQGAQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+ +P+ +++       E       + +  +  +        
Sbjct: 182 TALFSATMPEPIRRITKRFMNDPQEVKIKV---NNENAPDIEQSCWYVHGVRKNEALLRF 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 239 LEVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 299 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 358

Query: 360 IEKLIEKKVDWLN-------------GDLSSLNPPLEKIDIAQHN 391
           IE L++K ++ +                ++ +   LE  D+ Q+ 
Sbjct: 359 IEHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYR 403


>gi|147785805|emb|CAN62124.1| hypothetical protein VITISV_037577 [Vitis vinifera]
          Length = 398

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 129/381 (33%), Positives = 203/381 (53%), Gaps = 8/381 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  +G+   ++  +   G+ KP+ IQ + +  ++Q  DV   AQ+GTGKT+   L + 
Sbjct: 22  MSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVLPIIQGRDVIAQAQSGTGKTSMIALTVC 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++     V+    LIL PTRELA+Q        G   N+     IGG       +KLE
Sbjct: 82  QMVDTSNREVQA---LILSPTRELASQTEKVILAIGDFINIQAHACIGGKSVGEDIRKLE 138

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  ++  TPGR+ D   R  L    I++LV+DE+D ML  GF   I ++   +P   Q 
Sbjct: 139 YGVHIVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQV 198

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SAT+ +E+ +++  F+ +P RI V     T E I+  FVA   +  K   L      
Sbjct: 199 VLISATLPNEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--Y 256

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IFCN K+ V  L   +    F+V ++HG++ Q+ R  I++ F+ GT ++++
Sbjct: 257 DTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFRSGTTRVLI 316

Query: 301 ASDLAARGLDIPDVGHV---FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +D+ ARGLD+    HV    N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +
Sbjct: 317 TTDVWARGLDVQQASHVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKTDDIKIL 376

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             IE+    ++D +  +++ L
Sbjct: 377 RDIEQYYSTQIDEMPMNVADL 397


>gi|332186948|ref|ZP_08388689.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
 gi|332012958|gb|EGI55022.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
          Length = 459

 Score =  176 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 167/435 (38%), Positives = 246/435 (56%), Gaps = 11/435 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+  +V A+   GY +PTPIQ  +IP +L+  D+ GIAQTGTGKTA+FVLP +
Sbjct: 1   MSFSELGLAEPLVRALEAKGYSEPTPIQRDSIPTLLEGRDLLGIAQTGTGKTAAFVLPSI 60

Query: 61  TILEKGRARVRMPRTLI--LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +   RV      +  L PTRELA+Q+ADN + Y K   L VA + GG       + 
Sbjct: 61  QRLVEANKRVLPTHCRMLVLAPTRELASQIADNAKGYAKFSKLAVATVFGGTSINKNRQD 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR++D   +G L ++ IEILV+DEAD+MLD+GFI  ++ I  ++P  R
Sbjct: 121 LSRGVDILVATPGRLIDLVEQGFLNLSMIEILVLDEADQMLDLGFIHALRRIVKMIPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM   ++ +++ FL NP  + V   S+TAE +E        Q  +    +   
Sbjct: 181 QTLFFSATMPAAIRDLADKFLDNPATVSVTPVSTTAERVEQSVTFVTQQEKQALLTILL- 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +   ++  ++F   K     +   L   G +  AIHGN  Q  R + L  F+ G  ++
Sbjct: 240 --ADPAIELALVFTRTKHGADRVVKLLAGNGIAANAIHGNKSQGQRERALGEFRSGQTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DIP V HVFNF++PN AE Y+HRIGRT RAGR G A    A+++  ++ 
Sbjct: 298 LVATDIAARGIDIPGVSHVFNFELPNVAEQYVHRIGRTARAGRSGLAIAFCAEDERPYLK 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEKL  +K+  +    +      E I  +Q   A   +P P+     DR +     + +
Sbjct: 358 DIEKLTRQKITVVPLP-ADFVKRAETIK-SQRVKAIGADPAPR----VDRPRDPARPRAT 411

Query: 419 HIPLKESEKISKLQQ 433
           H P     +  + +Q
Sbjct: 412 HHPRATDARAPQGRQ 426


>gi|311249333|ref|XP_003123579.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Sus
           scrofa]
 gi|311249349|ref|XP_003123587.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Sus
           scrofa]
          Length = 483

 Score =  176 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 160/472 (33%), Positives = 235/472 (49%), Gaps = 31/472 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  LSE---DPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 123 ADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI---QNITSLVPFTR 178
             V+I TPGR      +     +  I  LV+DEADR+L+ G   +    + I + VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQ 237
           QTLLFSAT+TD L+++       P   E   P  T E ++  ++             L Q
Sbjct: 181 QTLLFSATLTDTLRELQSLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQ 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             Q +    + IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK    +
Sbjct: 241 NFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI  +
Sbjct: 301 ILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLV 360

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK------ 411
            AIE+ I+KK++  + + + +   L      Q N  R+   I  ++  FD +K+      
Sbjct: 361 HAIEEQIKKKLEEFSVEEAEVLQIL-----TQVNVVRRECEIKLEAANFDEKKEINKRKQ 415

Query: 412 ------------NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
                          ++ + I  K      K++Q +Q   A   G  G  P 
Sbjct: 416 MILEGKDPDLEAKRKAELAKIKQKNRRFKEKVEQALQRQKAGRAGHGGCPPR 467


>gi|294637108|ref|ZP_06715421.1| ATP-dependent RNA helicase RhlE [Edwardsiella tarda ATCC 23685]
 gi|291089702|gb|EFE22263.1| ATP-dependent RNA helicase RhlE [Edwardsiella tarda ATCC 23685]
          Length = 452

 Score =  176 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 167/450 (37%), Positives = 254/450 (56%), Gaps = 7/450 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL  +++ AV + GY  PTPIQ + IPLVLQR D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLCAELLRAVEEQGYRDPTPIQQQAIPLVLQRRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L +        R  R LIL PTRELAAQ+ DN  +Y ++  L   ++ GG+    Q  
Sbjct: 61  QLLHQNPKNGKGRRPVRALILTPTRELAAQIGDNVREYSRHLPLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++ + L NP  +EV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDEIKALAASLLHNPAEVEVARRNTASELV---SQHVHLVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L      +  ++F   K    +L   L K G S  AIHGN  Q +R + L++FK G I+
Sbjct: 238 FLIGSQDWRQVLVFTRTKYGANHLAEQLNKDGISAAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + +V N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPYVVNYELPNVPEDYVHRIGRTGRAQATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST-GFDRRKKNYSSQ 416
             IE+L+++ +  +       +P ++   I       + N   ++ T G  RR     S+
Sbjct: 358 RDIERLLKRPIPRMAIAGYEPDPSIKAEPIQNGRQGGRQNGRNERGTQGQGRRGTGTRSK 417

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFR 446
           +S     +    ++  Q+ +     +    
Sbjct: 418 ESSAAEGQRNPAARPGQNRRPRRPAAEAKG 447


>gi|82196760|sp|Q5U526|I4A3A_XENLA RecName: Full=Eukaryotic initiation factor 4A-III-A;
           Short=eIF-4A-III-A; Short=eIF4A-III-A; AltName:
           Full=ATP-dependent RNA helicase DDX48-A; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3-A; AltName:
           Full=DEAD box protein 48-A; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3 A
 gi|54311504|gb|AAH84859.1| Unknown (protein for MGC:85498) [Xenopus laevis]
          Length = 415

 Score =  176 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 205/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 43  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ 102

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 103 CLDI---QVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDY 159

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q  
Sbjct: 160 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVC 219

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 220 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 277

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 278 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 337

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR G  G A   V  +DI+ +  IE
Sbjct: 338 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGGKGVAINFVKNDDIRILRDIE 397

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 398 QYYSTQIDEMPMNVADL 414


>gi|168056517|ref|XP_001780266.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668320|gb|EDQ54930.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 397

 Score =  176 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 200/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G+   ++  +   G+ KP+ IQ + +  ++   D    AQ+GTGKT+   L +  
Sbjct: 25  SFDQMGIREDLLRGIYAYGFEKPSAIQQRAVMPIISGRDAIAQAQSGTGKTSMIALAVCQ 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     V+    LIL PTRELAAQ        G   N+     IGG       +KLE 
Sbjct: 85  MIDTATREVQA---LILSPTRELAAQTEKVILAIGDFMNVQAHACIGGKSIGEDIRKLEY 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++L++DE+D ML  GF   I ++   +P   Q +
Sbjct: 142 GVHVVSGTPGRVYDMIKRRTLRTRSIKLLILDESDEMLSRGFKDQIYDVYRYLPPELQVV 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 202 LVSATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   +    F+V A+HG++ Q+ R  I++ F+ GT ++++ 
Sbjct: 260 TLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSAMHGDMPQKERDAIMAEFRSGTTRVLIT 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 320 TDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRSDDIRILRDIE 379

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 380 QYYSTQIDEMPMNVADL 396


>gi|327262701|ref|XP_003216162.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Anolis
           carolinensis]
          Length = 420

 Score =  176 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 131/375 (34%), Positives = 206/375 (54%), Gaps = 5/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 38  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 97

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 98  CLDI---QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 154

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 155 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 214

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 215 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 272

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 273 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 332

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 333 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 392

Query: 362 KLIEKKVDWLNGDLS 376
           +    ++D +  ++S
Sbjct: 393 QYYSTQIDEMPMNVS 407


>gi|167835531|ref|ZP_02462414.1| putative ATP-dependent RNA helicase rhlE [Burkholderia
           thailandensis MSMB43]
          Length = 402

 Score =  176 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 164/392 (41%), Positives = 236/392 (60%), Gaps = 9/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R+  R  R LIL PTRELAAQV ++   Y K   L  A++ GG+    Q 
Sbjct: 61  QRLHTFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSAVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            ++     
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLAKDGISAMAIHGNKSQSARTRALSEFKNSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKID 386
           +  IE+LI++++  + + G     N   E I 
Sbjct: 358 LRDIERLIKREIPQEVIPGFEPDPNAKPEPIQ 389


>gi|187779626|ref|ZP_02996099.1| hypothetical protein CLOSPO_03222 [Clostridium sporogenes ATCC
           15579]
 gi|187773251|gb|EDU37053.1| hypothetical protein CLOSPO_03222 [Clostridium sporogenes ATCC
           15579]
          Length = 481

 Score =  176 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 135/429 (31%), Positives = 237/429 (55%), Gaps = 13/429 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  LS +++ ++   GY  P+ +Q + IPL+L+  D+   ++TG+GKTA+F +P+ 
Sbjct: 4   LTFENYKLSDEILKSLRKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPVC 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE      + P+ L+L PTRELA Q+ +          L    + G  P   Q ++L+
Sbjct: 64  EKLEL---EEKDPQVLVLTPTRELALQIKEEISNIALYKRLRCTAIFGKQPMSLQKRELK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR LDH  R  L +  I+  ++DEAD ML+MGFI  ++ +   +P  R T
Sbjct: 121 QRVHLVVGTPGRTLDHIERENLNLKKIKYFILDEADEMLNMGFIDQVEAVIKRLPKDRVT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ D+++ + + ++ NP+ I +N  + T +TI       Y    K    L Q + 
Sbjct: 181 MLFSATIPDKIENLCKRYMNNPENININPENITTKTINQ---CYYEVEGKNKFSLLQKII 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++ + N IIFCN ++ V  +   ++K+GF+  A+HG ++Q+ R++ +  FK+G  Q +V
Sbjct: 238 YKEVVDNSIIFCNTREKVDEILKYMKKEGFNAIALHGGMEQKDRLETMKKFKQGQFQFLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ I ++ HV N+++P   E+Y+HRIGRTGRAG+ G A T +    ++ +  I
Sbjct: 298 CTDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFLKDI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  I+K++           P LE+++  +           +     D +K+   + K +I
Sbjct: 358 EDYIDKEISKRE------EPSLEEVNKGKKIFEENIKDRLKIKVQKDNKKQKDIT-KIYI 410

Query: 421 PLKESEKIS 429
                +KI 
Sbjct: 411 SAGRKKKIR 419


>gi|149189555|ref|ZP_01867838.1| ATP-dependent RNA helicase DeaD [Vibrio shilonii AK1]
 gi|148836534|gb|EDL53488.1| ATP-dependent RNA helicase DeaD [Vibrio shilonii AK1]
          Length = 634

 Score =  176 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 157/463 (33%), Positives = 243/463 (52%), Gaps = 35/463 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+   G+V PTPIQ   IP +L   D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             L   + +   P+ ++L PTRELA QVA   +  G+N N    L I G      Q + L
Sbjct: 66  NKLNLDQRK---PQAVVLAPTRELAIQVAAEMKNLGQNINGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D  NR +L ++ +   V+DEAD ML+MGF+  +  I    P T Q
Sbjct: 123 KNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPETAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   L+K+ + FL+ P+ ++V   + T + +E  F         +        
Sbjct: 183 RVLFSATMPPMLKKIVDRFLREPEYVDVAGKNHTVDKVEQQFWVVKGVEKDEAMARLLET 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D     I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 243 EETD---ASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE++ +  ++ +   L           +A+    +    + Q              +K H
Sbjct: 360 IERVTKSSMEEIQLPLRD--------KVAEARLVKLGAELEQ--------------EKEH 397

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
             L +  ++ +  Q+  E DA +L       A +L + +GK  
Sbjct: 398 KSLDKFAELVEKLQESLEIDAATLA------AILLKRQQGKRP 434


>gi|291387348|ref|XP_002710262.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Oryctolagus
           cuniculus]
          Length = 1030

 Score =  176 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 143/448 (31%), Positives = 234/448 (52%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 372 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 431

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 432 HIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 491

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 492 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 551

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S     +E        +  KK   L 
Sbjct: 552 DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQV--IVIEEEKKFLKLL 609

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT 
Sbjct: 610 ELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTC 669

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 670 KLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARY 729

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     +  DL  L    +       +  +    I +KS+GF  +   +   
Sbjct: 730 AGDIIKALELSGTTVPSDLEKLWSDFK-------DQQKAEGKIIKKSSGFSGKGFKFDET 782

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +   E +K+ K    +Q++D +   
Sbjct: 783 EQAL-ANERKKLQKAALGLQDSDDEDAA 809


>gi|57235067|ref|YP_180931.1| DEAD-box ATP dependent DNA helicase [Dehalococcoides ethenogenes
           195]
 gi|57225515|gb|AAW40572.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dehalococcoides
           ethenogenes 195]
          Length = 560

 Score =  176 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 150/409 (36%), Positives = 225/409 (55%), Gaps = 9/409 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P V+  V   GY +PTPIQ + IP +L+ HDV G+AQTGTGKTA++ LP++
Sbjct: 1   MSFESFNFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          RTL+L PTRELA Q+A++F   G+   +    + GG+  + Q ++L 
Sbjct: 61  QKMLSTPR--GRVRTLVLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIRRLR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++  PGR+LDH  RG + +  +E L+IDEADRM DMGF P IQ+I   +    QT
Sbjct: 119 SGVDVVVACPGRLLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++K++     NP  I++ T +  +      +     Q +     + +   
Sbjct: 179 LLFSATMPPEVRKLTLETQTNPVTIQIGTQAPASSVSHSVYPVKNHQKTPLLIEILK--- 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K+ +IF   K    NL   + + GF+  ++ GN+ Q  R  ++  F+ G  +++V
Sbjct: 236 -TTETKSVLIFARTKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + HV N+D+P+  E+Y HRIGRTGR  R G+A +LV   D   +  I
Sbjct: 295 ATDIAARGLDIDHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMVRDI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST-GFDR 408
           +KLI   +  L  D    +    + D   H+  R   P    S  G++R
Sbjct: 355 QKLINSPIQRLRVD--GFDYATTRNDGQNHSQRRGFAPRRGYSAEGYNR 401


>gi|239825779|ref|YP_002948403.1| DEAD/DEAH box helicase [Geobacillus sp. WCH70]
 gi|239806072|gb|ACS23137.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. WCH70]
          Length = 466

 Score =  176 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 152/382 (39%), Positives = 231/382 (60%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS +++ A+   G+ + TPIQ +TIPL LQ  DV G AQTGTGKTA+F +P++ 
Sbjct: 3   TFHELGLSNELMKAIRRMGFEETTPIQAETIPLSLQNKDVIGQAQTGTGKTAAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +    + L++ PTRELA QV++   K G    + V  + GG   E Q + L++
Sbjct: 63  KVDV---KNEAIQGLVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI+DH NR  L ++N+  +V+DEAD ML+MGFI  I+ I S VP  RQTL
Sbjct: 120 RPHIIVGTPGRIIDHINRKTLRLDNVHTVVLDEADEMLNMGFIDDIEAILSNVPEKRQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++E F+  P  ++V     T   I+           KK   +   L  
Sbjct: 180 LFSATMPEPIRRIAERFMNEPHIVKVKAKEMTVPNIQQ---YYLEVQEKKKFDILTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G++   IHG++ Q  R+ +L  FKEG+I+++VA
Sbjct: 237 IQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   +I  +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHNIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++K++ +     +L+  LE
Sbjct: 357 RTTKRKMERMKP--PTLDEALE 376


>gi|333007150|gb|EGK26642.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-218]
          Length = 406

 Score =  176 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 160/407 (39%), Positives = 236/407 (57%), Gaps = 6/407 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSVAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N ++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNHELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
             IEKL++K++  +       +P ++   I      R    +  K  
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQRGGIRLMNKRK 404


>gi|309378859|emb|CBX22564.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 462

 Score =  176 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 159/453 (35%), Positives = 235/453 (51%), Gaps = 10/453 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L   D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPSALDGRDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QRLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLMDLMRSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPSDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    ++P+ IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK I +K+  L  +      P  K   A      K     +KS G+   KK       
Sbjct: 360 KIEKYINRKLPELTIE---GMEPTRKRKPAGGKPKGKGGRGERKSGGWRGDKKPGKEGFG 416

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
                E  K    ++D  +   +  GF+G   A
Sbjct: 417 GKTRGEGFKKEGFKKDGFKKTGE--GFKGKRKA 447


>gi|295702421|ref|YP_003595496.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294800080|gb|ADF37146.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
          Length = 503

 Score =  176 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 155/392 (39%), Positives = 228/392 (58%), Gaps = 15/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS ++  AV   G+ + TPIQ +TIPL L+ HD+ G AQTGTGKTA+F +P++  
Sbjct: 4   FQDLGLSQQLNKAVSKMGFEEATPIQSETIPLALEGHDLIGQAQTGTGKTAAFGIPLIEK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     V   + LI+ PTRELA QV++   K G+   + V  + GG     Q + L++ 
Sbjct: 64  VDVN---VDAIQGLIIAPTRELAVQVSEELYKIGQTKRVRVLSIYGGQDISRQIRALKKH 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH NR  L + ++  +++DEAD ML+MGFI  I+ I S VP   QTLL
Sbjct: 121 PHIIVGTPGRMLDHINRRTLRLQDVHTVILDEADEMLNMGFIEDIEKILSNVPENHQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +++++E F+  PK ++V     T   I            K+   +   L   
Sbjct: 181 FSATMPTPIRRIAEKFMNEPKVVKVQAKEVTMPNI---TQYYLEVQEKRKFDILTRLLDM 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  IIF   K+ V  L  +L  +G+S   IHG++ Q  R+ +L  FKEG+I ++VA+
Sbjct: 238 QSPELAIIFGRTKRRVDELSEALNMRGYSAQGIHGDLTQSKRLSVLRQFKEGSIDVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   +   +  IE+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGAAMTFVTPRETGQLHNIER 357

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
             ++K++        L PP   +D A     R
Sbjct: 358 TTKRKMER-------LTPP--TLDEAMEGQQR 380


>gi|260102329|ref|ZP_05752566.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           helveticus DSM 20075]
 gi|260083862|gb|EEW67982.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           helveticus DSM 20075]
 gi|328463453|gb|EGF35104.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus MTCC
           5463]
          Length = 503

 Score =  176 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 146/388 (37%), Positives = 231/388 (59%), Gaps = 7/388 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F++LGL+  ++ A+  +G+ + TPIQ +TIPL LQ  DV G AQTGTGKTA+F LP+ 
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK- 118
            +I +K +A   + + +I+EPTRELA Q  +   + G++ +  V ++ GG     Q +  
Sbjct: 61  QSIDKKEKAIQAIIQAIIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSL 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +    +L+ TPGR+LDH  RG + ++ +  +V+DEAD MLDMGFI  I++I       +
Sbjct: 121 KQHAPSILVGTPGRLLDHLKRGTIDLDKVNTVVLDEADEMLDMGFIKDIESILKYAKNCK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM   + ++ E F+++P  +++     TA+ I+  FV                
Sbjct: 181 QTLLFSATMPKPILRIGEKFMKDPAIVQIKAKELTADLIDQYFVRAKESEKFDIMCRL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     ++F   K+ V  L   L+ +G++   IHG++ Q  RM +L  F+EG + +
Sbjct: 239 -IDVQGPDLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++ 
Sbjct: 298 LVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGVSVTFVTPNEIGYMR 357

Query: 359 AIEKLIEKKVDW--LNGDLSSLNPPLEK 384
            IE+L +KK+    L  D  +L   L++
Sbjct: 358 TIEQLTKKKMSPISLPTDDQALRGQLKQ 385


>gi|257056836|ref|YP_003134668.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
 gi|256586708|gb|ACU97841.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
          Length = 570

 Score =  176 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 151/401 (37%), Positives = 221/401 (55%), Gaps = 20/401 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL P+++ A+ + GY +PTPIQ   IP +L   DV G A TGTGKTA+F LP+L  
Sbjct: 18  FSELGLRPELLQALAELGYEEPTPIQRAAIPPLLDGCDVVGQAATGTGKTAAFALPVLHR 77

Query: 63  LEKGR--------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           +  G          R   P  ++L PTRELAAQV +   +YG+   + V  + GG     
Sbjct: 78  IRDGERGERGARAQRGAAPSAVVLVPTRELAAQVCEAMRRYGRRLGVRVLPVYGGQSMSR 137

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LE G DV++ TPGR LDH +RG L ++ + ++V+DEAD MLDMGF   I  I    
Sbjct: 138 QLRALEEGVDVVVATPGRALDHLSRGSLDLSALRMVVLDEADEMLDMGFAEDIDTILERT 197

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQT+LFSATM   +  +   +L++P+RIE++   S            Y         
Sbjct: 198 PDDRQTMLFSATMPPRIAGLVRRYLRDPRRIELSRAESLDGDAASITQTAYVVPRGHKPA 257

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
               +   +T +  ++FC  ++ V  L  ++  +G+   A+HG +DQ  R +++   + G
Sbjct: 258 ALGRVLDIETPEATVVFCRTREEVDRLTETMNGRGYRAEALHGGMDQHQRNRVVGRLRTG 317

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           T  L+VA+D+AARGLDI  + HV N+DVP+  E Y+HRIGR GRAGR G A TL    + 
Sbjct: 318 TADLVVATDVAARGLDIDQLTHVVNYDVPSAPEVYVHRIGRVGRAGRQGSAITLAEPGEH 377

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           + I AIE++  + V            P+ K+       AR+
Sbjct: 378 RMIKAIERVTGQPV------------PIRKLPTVADLRARR 406


>gi|145353098|ref|XP_001420866.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581101|gb|ABO99159.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 404

 Score =  176 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 128/377 (33%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G+   ++  +   G+ KP+ IQ + +  ++   DV   AQ+GTGKT+   L +  
Sbjct: 32  TFDAMGIREDLLRGLYSYGFEKPSAIQQRAVVPIISGRDVIAQAQSGTGKTSMISLALCQ 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+     V+    L+L PTRELA Q        G   N+ V   IGG       +KL+ 
Sbjct: 92  MLDTTSREVQG---LVLSPTRELAVQTEKTALSLGNFMNVQVHACIGGRSIGDDIRKLDY 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L    I+ILV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 149 GCHIVSGTPGRVFDMIKRRNLRTRGIKILVLDEADEMLNKGFKEQIYDVYRYLPPETQVV 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+ +E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 209 LVSATLPNEVLEMTSKFMTDPMRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN KK V  L   + +  F+V A+HG++ Q+ R +I++ F+ GT ++++ 
Sbjct: 267 TLTITQAVIFCNTKKKVDWLTEKMRQNNFTVSAMHGDMPQKEREEIMNEFRGGTTRVLIT 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  IE
Sbjct: 327 TDVWARGIDVQQVSLVINYDLPGNRENYIHRIGRSGRYGRKGVAINFVKADDVRALRDIE 386

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 387 QYYSTQIDEMPMNVADL 403


>gi|238021260|ref|ZP_04601686.1| hypothetical protein GCWU000324_01158 [Kingella oralis ATCC 51147]
 gi|237868240|gb|EEP69246.1| hypothetical protein GCWU000324_01158 [Kingella oralis ATCC 51147]
          Length = 449

 Score =  176 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 151/450 (33%), Positives = 242/450 (53%), Gaps = 13/450 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + FADL L   ++ A+  AGY +PTPIQ ++IP  L   D+   AQTG+GKTA+F+LP +
Sbjct: 3   IKFADLNLDKNILSALKSAGYEEPTPIQAQSIPAALANQDIMASAQTGSGKTAAFLLPSL 62

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
             I+++     + PR L+L PTRELA QV  N + Y +N        L+GG  F  Q K 
Sbjct: 63  QKIIKRSEQPGKGPRVLVLTPTRELAQQVEKNAQLYAQNMKWVRTVTLVGGSSFGQQIKA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R  D+++ TPGR++DH   G++  + +E+LV+DEADRMLDMGFI  I+ I + +P +R
Sbjct: 123 LSRPIDIVVATPGRLMDHMRSGRIDFDRLEVLVLDEADRMLDMGFIDDIETIVAAMPESR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    +NP+ IE+    +  +  E         +  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKNPEVIEIERAEAQGKIEEQLLYCDDRNHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF   K     L   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDANIDQCVIFTATKAMTETLADELYEKGFAANCLHGDMPQGWRNRTLMDVRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A +    ++   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAVSFADAKEYMMVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IE+ I +K+  +   +  + P        + N   +  P  +   G  R +      + 
Sbjct: 360 KIERYINRKLPEI--VIEGMEP------TRKRNKNAERKPKGKGGWGGKRGEGERWGIRD 411

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGN 448
             P  E +   K +   ++      GF+  
Sbjct: 412 KKPFGEKKFGGKREGGFKKEGFKKDGFKAK 441


>gi|145640153|ref|ZP_01795737.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|145274739|gb|EDK14601.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.4-21]
          Length = 613

 Score =  176 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 141/405 (34%), Positives = 232/405 (57%), Gaps = 20/405 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 5   ITFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E++ K  +   +  L GG  ++ Q + L
Sbjct: 65  AQIDPSE---KHPQMLVMAPTRELAIQVADACEQFVKYAHGTRIVTLYGGQRYDIQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 122 KQGAQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+ +PK +++       E       + +  +  +        
Sbjct: 182 TALFSATMPEPIRRITKRFMNDPKEVKIKV---NNENAPDIDQSCWYVHGVRKNEALLRF 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 239 LEVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 299 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 358

Query: 360 IEKLIEKKVDWLN-------------GDLSSLNPPLEKIDIAQHN 391
           IE L++K ++ +                ++ +   LE  D+ Q+ 
Sbjct: 359 IEHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYR 403


>gi|145637208|ref|ZP_01792870.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
 gi|145269653|gb|EDK09594.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
          Length = 613

 Score =  176 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 141/405 (34%), Positives = 232/405 (57%), Gaps = 20/405 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 5   ITFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E++ K  +   +  L GG  ++ Q + L
Sbjct: 65  AQIDPSE---KHPQMLVMAPTRELAIQVADACEQFVKYAHGTRIVTLYGGQRYDIQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 122 KQGAQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+ +PK +++       E       + +  +  +        
Sbjct: 182 TALFSATMPEPIRRITKRFMNDPKEVKIKV---NNENAPDIDQSCWYVHGVRKNEALLRF 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 239 LEVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 299 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 358

Query: 360 IEKLIEKKVDWLN-------------GDLSSLNPPLEKIDIAQHN 391
           IE L++K ++ +                ++ +   LE  D+ Q+ 
Sbjct: 359 IEHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYR 403


>gi|114777228|ref|ZP_01452239.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal
           [Mariprofundus ferrooxydans PV-1]
 gi|114552373|gb|EAU54856.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal
           [Mariprofundus ferrooxydans PV-1]
          Length = 426

 Score =  176 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 170/435 (39%), Positives = 242/435 (55%), Gaps = 15/435 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGLS  ++ AV D GY  PTP+Q  +IP++L  HDV   AQTGTGKTA F LPM 
Sbjct: 1   MSFEKLGLSADLLRAVADQGYETPTPVQANSIPVILAGHDVLAGAQTGTGKTAGFTLPML 60

Query: 60  --LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             +      R+R    R L+L PTRELAAQV ++   YGK   L   ++ GG+    Q +
Sbjct: 61  QLMHKTHPERSRNHPIRALVLTPTRELAAQVGESIATYGKYLPLRSTVVFGGVGINPQIQ 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+RG D+L+ TPGR+LD   +GK  + ++E  V+DEADRMLDMGFI  I+ +  ++P  
Sbjct: 121 KLQRGVDILVATPGRLLDLIGQGKANLGHVEFFVLDEADRMLDMGFIHDIRKVLKMLPKK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT ++E++K++  FL  P         +  ET        +     K   L  
Sbjct: 181 RQNLLFSATFSEEIKKLANGFLHAPVY----VEVARNETAHQVTQVVHPVSKAKKRDLLS 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  Q   +  ++F   K     L   LE  G +  AIHGN  Q +R K L+ FK G+++
Sbjct: 237 HLIRQGDWQQVLVFTKTKHGANKLTTQLESDGITAVAIHGNKSQTARTKALAGFKAGSVR 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MVA+D+AARGLDI  + HV N+++P+ AE+Y+HRIGRTGRAG  G++ +LV+ ++ K +
Sbjct: 297 VMVATDIAARGLDIDSLPHVVNYELPHVAEDYVHRIGRTGRAGNSGESLSLVSGDEKKLL 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK--KNYSS 415
             IE+LI+K +  +      + P  E  D      A K     Q+          +   S
Sbjct: 357 VGIERLIKKPIAKV------VVPGFEPNDAEDVAAAAKEPKPGQRGQRRHDPSSPRKPHS 410

Query: 416 QKSHIPLKESEKISK 430
            +S  P + +   SK
Sbjct: 411 NRSRRPGRNARAASK 425


>gi|325291138|ref|YP_004267319.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324966539|gb|ADY57318.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 518

 Score =  176 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 138/367 (37%), Positives = 210/367 (57%), Gaps = 6/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+GLS  ++ A  D G+ + TPIQ KTIP+ +   D+ G AQTGTGKTA+F +PM+ 
Sbjct: 3   TFFDMGLSNFIIKATADMGFEEATPIQEKTIPVAMAGRDIIGQAQTGTGKTAAFAIPMIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            LE+          L++ PTRELA QVA+   K G+   +    + GG     Q + L  
Sbjct: 63  NLERH---AEGIGGLVVTPTRELAVQVAEEINKIGQFKGIHAQPIYGGQDINRQIRALRN 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++DH  R  + ++++ + V+DEAD ML MGFI  I++I   +    QTL
Sbjct: 120 RPQIIVGTPGRLMDHMRRHTIRLDHVSMAVLDEADEMLSMGFIEDIESILGEIQHKHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +  +S+ F+  P+ I +     T    E           ++   +   L  
Sbjct: 180 LFSATMPQSILNLSKRFMLEPEFISIKAKEVTVPNTEQ---YYVELPERQKFDVLCRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             +    I+F   K+ V  L  +L K+G+S   IHG++ Q  R  +L +FKEG   ++VA
Sbjct: 237 IQSPDLAIVFGRTKRRVDELYEALNKRGYSAEGIHGDLTQLRRDSVLRHFKEGVTDILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V H++NFD+P   E+Y+HRIGRTGRAG+ G A T V   ++ H+  IE
Sbjct: 297 TDVAARGLDISGVTHIYNFDIPQDPESYVHRIGRTGRAGKTGLAVTFVTPRELNHLRLIE 356

Query: 362 KLIEKKV 368
           ++ ++++
Sbjct: 357 QVTKRRI 363


>gi|296136685|ref|YP_003643927.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
 gi|295796807|gb|ADG31597.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
          Length = 666

 Score =  176 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 145/398 (36%), Positives = 226/398 (56%), Gaps = 13/398 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL   ++ A+ D GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L  
Sbjct: 9   FAELGLPEPLLQALRDVGYETPSPIQAATIPPLLAGRDVLGQAQTGTGKTAAFALPILAK 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++      R  + L+L PTRELA QVA+ F +Y  +      L I  G  +  Q   L+R
Sbjct: 69  IDCN---ARHTQALVLAPTRELAIQVAEAFARYATHLPGFNVLPIYGGQSYVPQLASLKR 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH  RG L ++ +  +V+DEAD ML MGFI  +++I    P  RQ  
Sbjct: 126 GAHVVVGTPGRIIDHLERGTLKLDQLAHMVLDEADEMLRMGFIDDVESILKKTPPQRQVA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P+ I +   ++TA  I+  +      +          ++ 
Sbjct: 186 LFSATMPSAIRRIAQTYLRDPQEITIKAATTTATHIQQRYWMVSGLHKLDALTRILEVEP 245

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + M   IIF   K+    L   L  +GF+  A++G++ Q  R +++   K+G + ++VA
Sbjct: 246 FEGM---IIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A   V   +   + AIE
Sbjct: 303 TDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAILFVTPRERHLLRAIE 362

Query: 362 KLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHA 393
           +   + +  +        + S ++  +E+I  A+    
Sbjct: 363 RATRQPITQMQLPSTEAVNDSRISRFMERITEAREQEG 400


>gi|311031130|ref|ZP_07709220.1| DEAD/DEAH box helicase domain protein [Bacillus sp. m3-13]
          Length = 507

 Score =  176 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 150/406 (36%), Positives = 228/406 (56%), Gaps = 10/406 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  ++ ++   G+ + TPIQ +TIP+ L   DV G AQTGTGKT +F LP+L  
Sbjct: 4   FKELGLSEDIMKSIDRMGFEEATPIQSETIPVALTGKDVIGQAQTGTGKTIAFGLPLLEN 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     ++     ++ PTRELA QVA+   K   +    V  + GG     Q + L++ 
Sbjct: 64  VDVTNESIQGI---VIAPTRELAIQVAEEIYKASYHKRARVLSVFGGQDISRQIRSLKKN 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH NR  L + N+  +V+DEAD ML+MGFI  I+ I +  P  +QTLL
Sbjct: 121 PHIVVGTPGRLLDHINRKTLRLQNVNTVVLDEADEMLNMGFIEDIEKILAETPEKKQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   ++ ++E F             +   TI +          KK       L   
Sbjct: 181 FSATMPAPIRAIAERF---MSEPVNVKVQAKELTISNIQQFYVEVPEKKKFDTLTRLLDI 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  IIF   K+ V  L  +L  +G+S   IHG++ Q  RM +L  FKEG+I ++VA+
Sbjct: 238 QSPELAIIFGRTKRRVDELSDALNVRGYSAEGIHGDLSQAKRMSVLRKFKEGSIDVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V+  ++ ++  +E+
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAITFVSPREVSYLHHVER 357

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           + ++K+D L     +L+  LE     + +  +    +  K+ GF R
Sbjct: 358 VTKRKMDKLKA--PTLDEALEGQQ--KMSMEKLTQAVEAKNLGFYR 399


>gi|283851662|ref|ZP_06368941.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. FW1012B]
 gi|283572992|gb|EFC20973.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. FW1012B]
          Length = 492

 Score =  176 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 155/458 (33%), Positives = 222/458 (48%), Gaps = 12/458 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    L   +   +   GY  PTPIQ + IP V +  D+ G+AQTGTGKTA+F+LP++
Sbjct: 1   MSFDSFCLHATITENIKRLGYENPTPIQAEAIPHVTEGRDLMGLAQTGTGKTAAFLLPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   ++  R  R LIL PTRELA Q+       G+   L  A++ GG+    Q + L 
Sbjct: 61  HRLMTTKSEKRGVRALILAPTRELAEQIYRAGLDLGRGTRLRAAVIYGGVGMFPQTRALR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++  PGR+LDH N+G +  + +E LV+DEAD M DMGF+P I+ I S +P  RQT
Sbjct: 121 QGVDIIVACPGRLLDHMNQGNVRFDALETLVLDEADHMFDMGFLPDIKRILSALPSERQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +               V         +     A Y     + A L   L 
Sbjct: 181 LLFSATMPPAISG----LAHETLTDPVTVRIGHMAPLSTVEHAIYPISHTQKAPLLLHLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   ++ I+F   K    NL   L + G     + GN+ QR R   +  F+ G+ Q++V
Sbjct: 237 EEAGKQSVIVFTRTKHRAKNLALQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  VGHV NFD+P+ AE Y HRIGRTGRA   G+A T V  ED+  + AI
Sbjct: 297 ATDIAARGIDVSQVGHVVNFDIPDTAEAYTHRIGRTGRAEHEGQAHTFVTGEDMGMVRAI 356

Query: 361 EKLIEK-----KVDWLNGDLSSLN---PPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           E  ++K     +V+    D S       P  +             P      G   R ++
Sbjct: 357 ESHMKKPLPRREVEGFEPDPSEFRRSYAPAPRYPARGRQGGYGGRPQQGGYRGQGDRARS 416

Query: 413 YSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMP 450
               +      E  +  + + D    D  +   R   P
Sbjct: 417 SDRPQGERSFSERPQGDRPRDDRARPDTRTERPRQERP 454


>gi|325128442|gb|EGC51323.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           N1568]
          Length = 462

 Score =  176 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 159/455 (34%), Positives = 238/455 (52%), Gaps = 14/455 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QRLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPTDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    ++P+ IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK I +K+  L  +      P  K   A      K     +KS G  RR  +   ++ 
Sbjct: 360 KIEKYINRKLPELTIE---GMEPTRKRKSAGGKPKGKGGWGDRKSGG--RRGDHKPGKEG 414

Query: 419 HIPLKESE--KISKLQQDIQENDADSLGFRGNMPA 451
                  E  K    ++D  +   +  GF+G   A
Sbjct: 415 FGGKTRGEGFKKEGFKRDGFKKTGE--GFKGKRKA 447


>gi|241760530|ref|ZP_04758623.1| dead/deah box helicase [Neisseria flavescens SK114]
 gi|241319034|gb|EER55536.1| dead/deah box helicase [Neisseria flavescens SK114]
          Length = 464

 Score =  176 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 155/436 (35%), Positives = 229/436 (52%), Gaps = 8/436 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L   D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALDGRDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QKLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++D    GK+  + +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIETIVEATPSDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    ++P+ IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKDPETIEVERVDDQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK I +K+  L  +      P  K   A      K     +KS G+   KK       
Sbjct: 360 KIEKYIARKLPELTIE---GMEPTRKRKSAGGKPKGKGGWGDRKSGGWRGDKKPAKEGFG 416

Query: 419 HIPLKESEKISKLQQD 434
                E  K    ++D
Sbjct: 417 GKARGEGHKKDGFKKD 432


>gi|109091647|ref|XP_001099400.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Macaca
           mulatta]
          Length = 763

 Score =  176 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 154/465 (33%), Positives = 243/465 (52%), Gaps = 23/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 185 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 244

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 245 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 304

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 305 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 364

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 365 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 424

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 425 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 484

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 485 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 544

Query: 360 IEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K  +                  K++ +  D+ ++     +    Q + A+ N      
Sbjct: 545 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLL 604

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             G +   +    +++    KE  K  K+ + +QE D   L  RG
Sbjct: 605 EKGKEAVVQE--PERNWFQTKEERKKEKIAKALQEFD---LALRG 644


>gi|19113775|ref|NP_592863.1| ATP-dependent RNA helicase, eIF4A related (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|1352438|sp|Q10055|FAL1_SCHPO RecName: Full=ATP-dependent RNA helicase fal1
 gi|1103737|emb|CAA92238.1| ATP-dependent RNA helicase, eIF4A related (predicted)
           [Schizosaccharomyces pombe]
          Length = 394

 Score =  176 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 203/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L   ++  +   GY  P+ +Q + I  + +  DV   AQ+GTGKTA+F + +L 
Sbjct: 22  SFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQ 81

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     VR  + LIL PTRELA Q+ +     G + N+     IGG       KKL+ 
Sbjct: 82  SIDLS---VRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDY 138

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   N+++L++DEAD +L+ GF   I +I   +P   Q +
Sbjct: 139 GQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVV 198

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++ +++  F  NP RI V     T E ++  F+A   +  K   L       
Sbjct: 199 VVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDL--YD 256

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  ++++ 
Sbjct: 257 TLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLIC 316

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 317 TDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIE 376

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     +D +  ++  +
Sbjct: 377 QYYSTVIDEMPMNIGDM 393


>gi|298490698|ref|YP_003720875.1| DEAD/DEAH box helicase domain-containing protein ['Nostoc azollae'
           0708]
 gi|298232616|gb|ADI63752.1| DEAD/DEAH box helicase domain protein ['Nostoc azollae' 0708]
          Length = 492

 Score =  176 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 174/468 (37%), Positives = 248/468 (52%), Gaps = 22/468 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L LSP+++ AV + GY KPTPIQ++ IP VL   D+   AQTGTGKTASF LP+L
Sbjct: 1   MSFSNLALSPEIIRAVTERGYTKPTPIQMQAIPAVLSGGDLLAGAQTGTGKTASFTLPLL 60

Query: 61  TILEKGRARVRMPRTL------ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L   +               IL PTRELAAQV ++   YGK   L    + GG+    
Sbjct: 61  HQLSSNKNVKSNSTGWVPIRALILTPTRELAAQVEESVHDYGKYLKLKSMAMFGGVSINP 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L+ G D+++ TPGR+LDH  +G + ++ IE+LV+DEADRMLDMGFI  I+ I S++
Sbjct: 121 QKRLLKSGVDIVVSTPGRLLDHVEQGTVNLSRIEVLVLDEADRMLDMGFIRDIRRIMSIL 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLF AT +D++++++   L  P  IEV   + TA+TI                 
Sbjct: 181 PKKRQNLLFFATFSDKIKELAAGLLNRPTMIEVARRNVTADTIAQRAYQVDRDKK---PQ 237

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L   L  QD     ++F   K     L   L        AIHGN  Q +R   L+ FK G
Sbjct: 238 LLAHLIKQDDWYQVLVFTRTKYGADRLVKQLNDDRIQALAIHGNKSQGARTHALAKFKNG 297

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           ++Q++VA+D+AARGLDI ++ HV N+D+P   E+Y+HRIGRTGRAG  G+A +LV  ++ 
Sbjct: 298 SLQVLVATDIAARGLDISELPHVVNYDLPYVPEDYVHRIGRTGRAGARGEAISLVCVDEY 357

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS----------- 403
             +  IEKLI++K+         +NP ++   I Q+   +K  P P +            
Sbjct: 358 HLLADIEKLIQQKLPLEVITGFGINPEIKPEPI-QNGRRQKPKPGPDQEMVGSGSKPKLS 416

Query: 404 -TGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMP 450
                +RK   SS         S    + +Q  + +        G  P
Sbjct: 417 PQTLGKRKAALSSTDGRKSGASSSASHERKQKPKPSRHQETTRSGAKP 464


>gi|161504014|ref|YP_001571126.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865361|gb|ABX21984.1| hypothetical protein SARI_02107 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 455

 Score =  176 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 167/437 (38%), Positives = 244/437 (55%), Gaps = 24/437 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPPK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G ++
Sbjct: 238 LLIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDLR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCIDEHKLL 357

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKID----------------IAQHNHARKNNPI 399
             IEKL++K++  +   G     +   E I                  +Q    R   P 
Sbjct: 358 RDIEKLLKKEIPRITTPGYEPDPSIKAEPIQNGRQQRGGGGGGRGRGQSQGGAGRSQQPR 417

Query: 400 PQKSTGFDRRKKNYSSQ 416
            Q S     + K  + +
Sbjct: 418 RQDSGAPKAKSKPRAGE 434


>gi|88858341|ref|ZP_01132983.1| putative ATP-dependent RNA helicase (rhlE-like); DEAD-box protein
           family protein [Pseudoalteromonas tunicata D2]
 gi|88819958|gb|EAR29771.1| putative ATP-dependent RNA helicase (rhlE-like); DEAD-box protein
           family protein [Pseudoalteromonas tunicata D2]
          Length = 413

 Score =  176 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 172/424 (40%), Positives = 243/424 (57%), Gaps = 13/424 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+ ++V A+ + GY  PTPIQ   I  +LQ  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MGFAALGLNQQLVQALTECGYDTPTPIQTAAIGEILQGKDVMAGAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R    RTL+L PTRELA QV  +FEKYG++  LT AL  GG+    Q K ++
Sbjct: 61  QRLAEQPERKGQLRTLVLTPTRELAQQVFASFEKYGQHSELTAALAYGGVSIGEQIKAIK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+++ TPGR+LDH  +G + ++N++ LV DEADRMLDMGFI  I NI   +P  RQT
Sbjct: 121 AGVDIMVATPGRLLDHLVKGTVNLSNVQYLVFDEADRMLDMGFIDEINNILRRLPKERQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D + K+S+  L  P  IEVN  +  A  +E    A  A   ++         
Sbjct: 181 LLFSATFDDAIFKLSKKLLNQPVLIEVNQRNQAASEVEQIVYAVDADRKRELISHL---I 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  ++F   K+    L   + K G    AIHG+  Q +R K LS FKEG  +++V
Sbjct: 238 GAKNWQQVLVFTRTKQTADELAKEMCKDGLKTQAIHGDKSQGARDKALSEFKEGKTRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + +V N+++P  AE+YIHRIGRTGRAG  G A +L++ ++   ++ I
Sbjct: 298 ATDVAARGIDIQQLQYVINYELPYIAEDYIHRIGRTGRAGEKGLAISLLSIDENWLLEEI 357

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           E +++K++   WL G    L    E +D       RKN  + +K     R     +  ++
Sbjct: 358 EAVLDKRLPQQWLPGYEPDLTK--EPVD------KRKNGKVAEKRRAKKRLSGQKTGNRA 409

Query: 419 HIPL 422
               
Sbjct: 410 QRKR 413


>gi|212712156|ref|ZP_03320284.1| hypothetical protein PROVALCAL_03238 [Providencia alcalifaciens DSM
           30120]
 gi|212685203|gb|EEB44731.1| hypothetical protein PROVALCAL_03238 [Providencia alcalifaciens DSM
           30120]
          Length = 477

 Score =  176 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 163/450 (36%), Positives = 249/450 (55%), Gaps = 12/450 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L+ +++ A+ + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L 
Sbjct: 31  SFSDLALNEEILRAINELGYESPTPIQQQAIPAVLAGKDLLASAQTGTGKTAGFTLPILQ 90

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                      R  R LIL PTRELAAQVA+N ++Y ++  +   ++ GG+    Q  KL
Sbjct: 91  KLVDNPRGNNRRPIRALILTPTRELAAQVAENVKEYSRHLKIRSFVVFGGVSINPQMMKL 150

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVLI TPGR+LD  ++  + ++ +E+ V+DEADRMLDMGFI  I+ + + +P  RQ
Sbjct: 151 RGGVDVLIATPGRLLDLEHQNAVDLSQVEVFVLDEADRMLDMGFIHDIRRVITKLPKKRQ 210

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE+++++   L NP  IEV   +S +E +             +       +
Sbjct: 211 NLLFSATFSDEIKQLASKLLNNPVSIEVAPRNSASEQVTQYVHLVDKNRKAEL---LSFM 267

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  +  ++F   K     L   L K G    AIHGN  Q +R + L++FK G I+++
Sbjct: 268 IGRENWQQVLVFTRTKHGANRLAEHLNKDGVKAAAIHGNKSQGARTRALADFKSGDIRVL 327

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + +V NF++PN AE+Y+HRIGRTGRA   G A +LV  ++ K +  
Sbjct: 328 VATDIAARGLDIEQLPYVVNFELPNVAEDYVHRIGRTGRAEATGMAVSLVCIDEAKLLKD 387

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDI---AQHNHAR----KNNPIPQKSTGFDRRKKN 412
           IEKL++K +  +  +    NP ++   I   +Q N  R    +       + G  R ++ 
Sbjct: 388 IEKLLKKSIPLMAIEGYEPNPSIKAEPIQKPSQRNDRRSPDNRGGERSNSNKGHSRPRRQ 447

Query: 413 YSSQKSHIPLKESEKISKLQQDIQENDADS 442
            +S                Q+ +++  ++S
Sbjct: 448 NTSAGKGQSESAGSPWRSAQKRVRQGRSES 477


>gi|153835973|ref|ZP_01988640.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810]
 gi|308094943|ref|ZP_05892523.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus AN-5034]
 gi|308095142|ref|ZP_05903781.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus Peru-466]
 gi|308125529|ref|ZP_05775749.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus K5030]
 gi|149750727|gb|EDM61472.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810]
 gi|308085569|gb|EFO35264.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus Peru-466]
 gi|308092338|gb|EFO42033.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus AN-5034]
 gi|308112170|gb|EFO49710.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus K5030]
          Length = 444

 Score =  176 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 131/424 (30%), Positives = 201/424 (47%), Gaps = 8/424 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + KPT IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKDLGLDNRLLKNLKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR +IL PTRELA QV           +   AL++GG  F  Q K L
Sbjct: 61  HKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYDAALILGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH     L ++ +E L++DEADRMLD+GF P ++ I +     R+
Sbjct: 121 RRYPKFIVATPGRLADHLEHRSLYLDGLETLILDEADRMLDLGFAPELRRIHNAAKHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +              +    S  E  +         +      + + +
Sbjct: 181 QTLMFSATLDHAEVNDIASEMLNAPKRIAVGVSNEEHKDITQKFYLCDHLDHKEAILERV 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+   +  IIF   + +   L   L ++     A+ GN++Q  R  I+S F+    +++
Sbjct: 241 LSEAEYRQVIIFTATRDDTERLTAKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDI  V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D      
Sbjct: 301 VTTDVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKR 360

Query: 360 IEKLIEKKV-----DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           IE  +++ +     + L G    L PP  K D        K      K       K++ S
Sbjct: 361 IETYLQQDLAFSVFEDLKGKFKGLKPP--KKDFRNKKATTKKARPQAKKVAKQPAKRDKS 418

Query: 415 SQKS 418
             K+
Sbjct: 419 FYKN 422


>gi|261868715|ref|YP_003256637.1| cold-shock deAd box protein a [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414047|gb|ACX83418.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 595

 Score =  176 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 137/373 (36%), Positives = 221/373 (59%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL   ++ AV D G+  P+PIQ   IP +L+  DV G+AQTG+GKTA+F LP+L
Sbjct: 1   MTFMDLGLPEFILNAVSDLGFQTPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E++ K       + +  G  ++ Q + L
Sbjct: 61  AKIDPNE---KHPQLLVMAPTRELAIQVADACEQFMKYAKGINIVTLYGGQRYDIQLRAL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  RG L +  ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 118 KQGAQVVVGTPGRILDHIRRGTLNLAELKAIVLDEADEMLRMGFIEDVETVMAELPEHHQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+++P+ I++     +A  I       +              
Sbjct: 178 TALFSATMPEPIRRITKRFMKDPQEIKIKATQQSAPDIAQSCWYVHGFRKNDA---LLRF 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 235 LEVEDFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSLDIV 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 295 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 354

Query: 360 IEKLIEKKVDWLN 372
           +E LI+K ++ + 
Sbjct: 355 VEHLIKKNIEEVE 367


>gi|187736504|ref|YP_001878616.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426556|gb|ACD05835.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 400

 Score =  176 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 145/405 (35%), Positives = 220/405 (54%), Gaps = 7/405 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  V+ AV   GY  PTPIQ + IP++L+  D+ G +QTGTGKTA+F LP+L
Sbjct: 1   MLFSELGLSEPVLKAVEKCGYEHPTPIQEQAIPIILEGRDLIGASQTGTGKTAAFALPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T ++     +  P+ L+LEPTRELA QVA++F +YG+   L VALL GG+ +  Q + L+
Sbjct: 61  TRIQP----IGKPQILVLEPTRELADQVAESFAEYGEFTGLKVALLYGGVGYGKQTEDLK 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GAD+++ TPGR++DHF R  +    ++ LV+DE DRMLDMGF+P ++ I +L P+  + 
Sbjct: 117 KGADIVVATPGRLVDHFYRCTMRFGEVKALVLDEVDRMLDMGFLPIVRKIVNLCPWEGRQ 176

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LF +     +      +               A TI H F         +  L      
Sbjct: 177 TLFFSATMPPVIAGFAKWCLTDPAEVTIARREVAATISHAFYPVALDQRDELLLALLKGT 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              ++        ++ + V            V  +H +I Q+ RM+ L  FK G   ++V
Sbjct: 237 DFRSVMIF-TRTRKEADAVCGMLKHHGYRGEVAVMHSDIPQKERMEALKGFKSGKYDILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  V HV N+ VP  AE+Y+HRIGRTGRA   G AFT++  +++    A+
Sbjct: 296 ATDVAARGIDISGVTHVINYRVPENAEDYVHRIGRTGRAEASGDAFTIMTADELDFAAAV 355

Query: 361 EKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           E  I K ++   L+G   +    LE   +      +   P  ++ 
Sbjct: 356 ENFIGKPIERKKLDGFNYTYTALLEDKPVKSVRKPKPAGPKRRRR 400


>gi|328853252|gb|EGG02392.1| hypothetical protein MELLADRAFT_75483 [Melampsora larici-populina
           98AG31]
          Length = 486

 Score =  176 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 149/423 (35%), Positives = 230/423 (54%), Gaps = 7/423 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LGL   +  A     +  PTPIQ ++IP  LQ  D+ G+AQTG+GKTA+F LP+L
Sbjct: 59  ITFASLGLIEPLCKACESLNFKTPTPIQTESIPYALQNKDIIGLAQTGSGKTAAFALPVL 118

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L    +        +L PTRELA Q++  F+  G    +   +++GG+   +Q   L 
Sbjct: 119 QSLWDSPSAFFA---CVLAPTRELAYQISQQFDALGSTIGVKTVVIVGGMDMMSQAIALS 175

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   V++ TPGR+ DH    K     N++ L++DEADR+LDM F P I  I  ++P  R+
Sbjct: 176 KRPHVIVATPGRLHDHLEHTKGFSLRNLQFLIMDEADRLLDMDFGPVIDKILKVIPKERK 235

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT ++ K+    L NP ++EV+    T   +   ++       K        L
Sbjct: 236 TYLFSATMTTKVAKLQRASLNNPVKVEVSAKYDTVSALVQTYLFLPF---KHKDTYLVYL 292

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++ + K+ I+F     +   L   L   GF    +HG + Q +R+  L+ FK G   L+
Sbjct: 293 ANELSGKSLIVFTRTVHDASRLSLILRTLGFPAVPLHGQLSQSARLGALNKFKSGDQSLL 352

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GK+ TLV + D++ +  
Sbjct: 353 VATDVASRGLDIPAVDCVINFDLPTNSKDYIHRVGRTARAGRSGKSITLVTQYDVELLQR 412

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE +I KK++        +    E++  A    AR+   I +    F+R++K+   + S 
Sbjct: 413 IEGVIGKKMNEFEHQKEQVMVLGERVGEAAREVAREMREIERNGNKFNRKRKSGEMKPSK 472

Query: 420 IPL 422
           I +
Sbjct: 473 IKM 475


>gi|307258113|ref|ZP_07539865.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306863476|gb|EFM95407.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 445

 Score =  176 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 141/439 (32%), Positives = 230/439 (52%), Gaps = 11/439 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F +L L+P+++ A+   GY +PT +Q +TIP  L   D+ G A TGTGKTA+F+LP +
Sbjct: 8   MTFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAI 67

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QVA+  + + +   L++A + GG+ ++   +  
Sbjct: 68  QHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEVF 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR++ +          +EIL+ DEADRML MGF    + I +   + + 
Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT+  EL     + + +     ++   S  E  +      +A   +    L   L
Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLK-IDAEPSRRERKKIQQWYYHADNVEHKTKLLARL 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S   M+  I+F  ++++V  L  +L K+G     + G++ Q  R + ++  K+G + ++
Sbjct: 247 ISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDGVVNVL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI DV +V NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D K +  
Sbjct: 307 VATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGK 366

Query: 360 IEKLIEK--KVDWLNGDLSSLNPPLE-------KIDIAQHNHARKNNPIPQKSTGFDRRK 410
           I++  E+  K   + G       P +       K + A+    ++      K+    R K
Sbjct: 367 IKRYTEELLKPRVIEGLEPRTKAPKDGELNTTTKKEKARIKKRKEAKKEAAKAKVKVRHK 426

Query: 411 KNYSSQKSHIPLKESEKIS 429
              +  K   P  E+ K +
Sbjct: 427 DTKNVGKRRKPASEAAKSA 445


>gi|317488345|ref|ZP_07946905.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
 gi|325830722|ref|ZP_08164106.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
 gi|316912552|gb|EFV34101.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
 gi|325487129|gb|EGC89572.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
          Length = 443

 Score =  176 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 152/419 (36%), Positives = 233/419 (55%), Gaps = 18/419 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGLS   + AV   G+  PTP+Q + IPLVL+  DV   A TGTGKTA+F LP+  
Sbjct: 33  TFQDLGLSETTLSAVERMGFTAPTPVQEQAIPLVLEGRDVVAAATTGTGKTAAFALPLFE 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + + + R   PR L++ PTRELA Q+     +  K  N  +  ++GG  ++ Q  KL+R
Sbjct: 93  RIGRAK-RPGSPRALVVSPTRELAQQIDAACTQLAKASNRRMLTVMGGTKYKGQIAKLDR 151

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVL+ TPGR+ D   RG + + ++E+LV+DEADRMLDMGF P ++ + +  P +RQTL
Sbjct: 152 GIDVLVATPGRLYDLMERGVVKLRDVEVLVLDEADRMLDMGFWPTMKKVVAATPSSRQTL 211

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ +   + L++P  +     S   ET +            K   L +L+  
Sbjct: 212 LFSATLDRKVMQSVSSILKDPAFV---EVSHKGETADTIDQFMIPVGPMKKPELLRLVLQ 268

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   K  I+F + K         L++ GF   +IH +  Q  R + L  F +G I ++VA
Sbjct: 269 QRGSKRVIVFTDTKTRAEICTGQLKRAGFRADSIHSDKTQVQRKRALEGFSKGAIDVLVA 328

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+ ++ +V N+D+P   E+Y+HRIGRTGRAG  G A + V+ E    +  IE
Sbjct: 329 TDVLARGIDVSNIEYVVNYDLPESPEDYVHRIGRTGRAGETGYAISFVSPEAKAQLLDIE 388

Query: 362 KLIEKKVDWLNGD----------LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           KL+ +++  L+ D          L+S   P   +  A  + + + N     ++GF RR+
Sbjct: 389 KLLGERIPTLDIDGYDATEAEKALASQFVPKATVGSAAFSRSLRRN----GASGFGRRR 443


>gi|228968588|ref|ZP_04129573.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791080|gb|EEM38697.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 481

 Score =  176 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 143/409 (34%), Positives = 234/409 (57%), Gaps = 10/409 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++K+S  ++ +P  IE+     T + IEH     +     +   L + +  
Sbjct: 182 LFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEH---TLFEAIEDEKFSLLKDVTM 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
             I  ++    G L       EK    +  HA+   PI +K    D  K
Sbjct: 359 DYIGFEIPKAIGPLKE-EVMKEKAAFEEKIHAK---PIIKKDKNADINK 403


>gi|227356697|ref|ZP_03841083.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
 gi|227163205|gb|EEI48136.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
          Length = 465

 Score =  176 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 167/452 (36%), Positives = 249/452 (55%), Gaps = 15/452 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGLS  ++ A+ + GY  PTPIQ + I  +L   DV   AQTGTGKTA+F LP+L 
Sbjct: 3   DFTSLGLSEALLRAIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPILE 62

Query: 62  ILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L     +    +  + LIL PTRELAAQ+ADN + Y +   +   ++ GG+    Q  K
Sbjct: 63  KLATSAEKTKGRKPVKALILTPTRELAAQIADNVKAYSRYLPIRSLVVFGGVSINPQMMK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G DVLI TPGR+LD  ++  + ++ +E+LV+DEADRMLDMGFI  I+ + + +P  R
Sbjct: 123 LRGGVDVLIATPGRLLDLEHQNAVDLSRVEVLVLDEADRMLDMGFIHDIRRVINKLPKKR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT + E+  ++ + L NP  I V   +S AE++       +    K+   L   
Sbjct: 183 QNLLFSATFSKEITGLANSLLNNPISIAVAPKNSAAESV---DQYVHLVDKKRKTELLSH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   +     +IF   K     L   L   G    AIHGN  Q +R + L++FK+G ++ 
Sbjct: 240 LIGLENWPQVLIFTRTKHGANKLAEHLNLDGIKSAAIHGNKSQGARTRALADFKDGKLKA 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + +V NF++P  AE+Y+HRIGRTGRA   GKA +LV  ++   + 
Sbjct: 300 LVATDIAARGLDIDQLPYVVNFELPQVAEDYVHRIGRTGRAAATGKAISLVCVDEHGLLA 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLE--KIDIAQHNHARKNNP-------IPQKSTGFDRR 409
            IE+L+++++  L  +    +P ++   +     N AR N         +  K      R
Sbjct: 360 DIERLLKREIPRLALEGYDPDPSIKAAPLHKKPKNKARNNKEGGHGRADMRGKDNRHTPR 419

Query: 410 KKNYSSQKSHIPLKESEKISKLQQDIQENDAD 441
            KN  +QK     +  +  SK  +  +++D D
Sbjct: 420 NKNSRNQKESETGEIKQNKSKPARRSRKHDDD 451


>gi|307730917|ref|YP_003908141.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307585452|gb|ADN58850.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
          Length = 517

 Score =  176 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 175/459 (38%), Positives = 253/459 (55%), Gaps = 15/459 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L            R  R LIL PTRELAAQV ++   YGK   L   ++ GG+    Q
Sbjct: 61  QRLHSMPPVAAASGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G D+++ TPGR+LDH  +  + ++++EILV+DEADRMLDMGFI  I+ + + +P
Sbjct: 121 IGALKSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT +DE++ +++N L +P  IEV   ++TAET+            ++    
Sbjct: 181 PKRQNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTH 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 Q      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK+GT
Sbjct: 241 L---IKQHNWFQVLVFTRTKHGANRLAEQLSKDGISALAIHGNKSQSARTRALAEFKDGT 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++++
Sbjct: 298 LQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQ 357

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            +  IEKLI++ V  + + G         E I + +          P++  G  +     
Sbjct: 358 LLKDIEKLIKRPVPQEVIPGFEPDPTAKPEPI-LRRGQGGGGGGRSPRQGQGAPKAGNGG 416

Query: 414 SSQKSHIPLKESEKISKL----QQDIQENDADSLGFRGN 448
           +   +  P   S++  +     QQ  + + A   G  G+
Sbjct: 417 NGGSARAPQGTSQRSGQRAPSGQQQPKPSGAKPAGNGGH 455


>gi|195452524|ref|XP_002073391.1| GK13178 [Drosophila willistoni]
 gi|194169476|gb|EDW84377.1| GK13178 [Drosophila willistoni]
          Length = 395

 Score =  176 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L 
Sbjct: 23  TFNAMNLKEELLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQ 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+      ++     L PTRELA Q+       G   N+   + IGG       +KL+ 
Sbjct: 83  SLDTTLRETQVLC---LSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDY 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 140 GQHIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 200 LISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R +I+  F+ G  ++++ 
Sbjct: 258 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLIT 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 318 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIE 377

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 378 QYYSTQIDEMPMNVADL 394


>gi|194744201|ref|XP_001954583.1| GF18341 [Drosophila ananassae]
 gi|194903996|ref|XP_001980981.1| GG24917 [Drosophila erecta]
 gi|195055753|ref|XP_001994777.1| GH14195 [Drosophila grimshawi]
 gi|195110945|ref|XP_002000040.1| GI24868 [Drosophila mojavensis]
 gi|195391782|ref|XP_002054539.1| GJ24512 [Drosophila virilis]
 gi|195499068|ref|XP_002096791.1| GE25867 [Drosophila yakuba]
 gi|190627620|gb|EDV43144.1| GF18341 [Drosophila ananassae]
 gi|190652684|gb|EDV49939.1| GG24917 [Drosophila erecta]
 gi|193892540|gb|EDV91406.1| GH14195 [Drosophila grimshawi]
 gi|193916634|gb|EDW15501.1| GI24868 [Drosophila mojavensis]
 gi|194152625|gb|EDW68059.1| GJ24512 [Drosophila virilis]
 gi|194182892|gb|EDW96503.1| GE25867 [Drosophila yakuba]
          Length = 399

 Score =  176 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L 
Sbjct: 27  TFNAMNLKEELLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQ 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+      ++     L PTRELA Q+       G   N+   + IGG       +KL+ 
Sbjct: 87  SLDTTLRETQVLC---LSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDY 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 144 GQHIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 204 LISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 261

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R +I+  F+ G  ++++ 
Sbjct: 262 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLIT 321

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 322 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIE 381

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 382 QYYSTQIDEMPMNVADL 398


>gi|168704554|ref|ZP_02736831.1| ATP-dependent RNA helicase [Gemmata obscuriglobus UQM 2246]
          Length = 523

 Score =  176 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 132/370 (35%), Positives = 207/370 (55%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADL L   ++ A+  AGY  PTPIQ   IP  L+  DV G AQTGTGKTA+F++P L
Sbjct: 86  MLFADLKLMRPLMDAITAAGYKNPTPIQENVIPPALRGKDVIGQAQTGTGKTAAFLIPFL 145

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                   +   P  +++ PTRELA Q+A+  EK   +       + GG   + Q   L 
Sbjct: 146 NRWRPHTLKG--PIGVVMTPTRELALQIANEAEKLAPSKRFRCVPVYGGTGMQRQLDGLT 203

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+++ TPGR+LDH  RG + ++ +   V+DEADRMLD+GF   I+ I    P  RQT
Sbjct: 204 RGCDLVVGTPGRMLDHLQRGSMSLSQVRYAVLDEADRMLDIGFRDDIERILKRCPSERQT 263

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL SAT+ D ++++   ++++P  + +     T + I   +             L + + 
Sbjct: 264 LLMSATVPDSIKRLVNRYMRDPVHLHMMPEKPTVDKIRQSYFTVDQDRK---FELLKRVV 320

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  +IF  +K+   NL   L++       IHG++ Q  R KI++ F+   I+ ++
Sbjct: 321 EREKPRQCLIFVERKRWADNLYRDLKRAVPKAAVIHGDLPQSQREKIMAAFRTADIKYLI 380

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ +RG+D+  + HV N+D+P   ENY+HRIGRTGR G+ G A + V  E  +H+  I
Sbjct: 381 ATDVMSRGIDVSGLSHVINYDLPMDIENYVHRIGRTGRIGKDGIAISFVLPEQGEHLTNI 440

Query: 361 EKLIEKKVDW 370
           E +I + ++ 
Sbjct: 441 EMMINRLIEE 450


>gi|90577494|ref|ZP_01233305.1| putative ATP-dependent RNA helicase RhlE [Vibrio angustum S14]
 gi|90440580|gb|EAS65760.1| putative ATP-dependent RNA helicase RhlE [Vibrio angustum S14]
          Length = 497

 Score =  176 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 190/487 (39%), Positives = 271/487 (55%), Gaps = 34/487 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  ++ AV   GY KP+PIQ + IP +L   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLSAPILEAVAKQGYEKPSPIQEQAIPAILAGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  GR  R    R L+L PTRELAAQV ++   YGKN  L+ A++ GG+    Q  ++
Sbjct: 61  ERLANGRPARSNHVRALVLTPTRELAAQVGESVATYGKNLRLSSAVVFGGVKVNPQMLRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D  ++  +   ++EILV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLHSQNAVKFRDVEILVLDEADRMLDMGFIRDIRKILALLPKERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++++++  + NP  I+VN  + TA T++           KK   L   L
Sbjct: 181 NLLFSATFSDEIRELAKGLVNNPVEIDVNPRNQTARTVKQWICPVDQ---KKKPNLLTKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   K  ++F   K     L   LE +G S  AIHGN  Q +R K L+NFK G ++++
Sbjct: 238 LNERNWKQVLVFTKTKHGANKLATHLESRGVSAAAIHGNKSQGARTKALANFKSGDVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+P+ AE+Y+HRIGRTGRAG  G+A +LV+ E+ K + A
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPHVAEDYVHRIGRTGRAGCVGEAISLVSAEEAKDLAA 357

Query: 360 IEKLIEKKVDW--LNGDLSSLNPPLEKID---------------IAQHNHARKNNPIPQK 402
           IE+L ++  D   + G   +   P  K+D               +A+   A         
Sbjct: 358 IERLTQQVFDREIIEGFKPTNALPQSKLDTRPIKPKKPKKQKTFVAREGAATGEKRSTNN 417

Query: 403 STGFDRRK-----KNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
           + G  +RK         S  +    K SE+ ++  +  +  DA               K 
Sbjct: 418 NNGGAKRKPASRRPQGQSTDAANNEKRSEQGARPARKPRNTDAKPQSNGD--------KP 469

Query: 458 RGKLNDK 464
           R + ND+
Sbjct: 470 RRRFNDE 476


>gi|256829787|ref|YP_003158515.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578963|gb|ACU90099.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
           DSM 4028]
          Length = 545

 Score =  176 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 160/438 (36%), Positives = 239/438 (54%), Gaps = 10/438 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL  +++ A+ + GY  PT IQ + IP++L   D+   AQTGTGKT +F LP++
Sbjct: 1   MSFDQLGLRVELLKAIKNKGYEAPTAIQAQAIPVILAGRDILARAQTGTGKTDAFGLPIV 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL   R     PR LIL PTRELA QV ++ + Y +  +L   +  GG+  E Q  +LE
Sbjct: 61  QILGLTRGNGHHPRALILTPTRELALQVGESIKAYARKVSLRCTVAFGGVRIEPQIARLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+LD  ++  L + +IE LV DEADRMLD+GF   I  I  L+P  R+T
Sbjct: 121 RGIDILVATPGRLLDLASQEHLSLASIEFLVFDEADRMLDLGFSGEINAILDLLPTVRRT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT T +++ ++   L  P+ IE+   ++ AE +       +         L   L 
Sbjct: 181 MLFSATYTPQIKALAAKMLDKPEYIEITPDTAAAEAV---QQKVHHVNKDNKLPLLLHLI 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      ++F   +     L   L   G SV A+HG+  Q  R + L  FK+G I ++V
Sbjct: 238 EKQKQDRILVFARTRTWANRLTDKLAAHGISVAALHGSKSQSLRKRTLEEFKDGKIHILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V N+D+PN  E+Y+HRIGRTGRAG  G A +LV+ E+   + AI
Sbjct: 298 ATDVAARGLDISNLPLVVNYDIPNSPEDYVHRIGRTGRAGVSGIAVSLVSPEERNLLLAI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E L+  ++      + ++    E  D+      R  NP  +++    R  K   ++KS  
Sbjct: 358 EDLLRHQIP-----VEAVKGFTEDSDVPDFVLYRPGNPKSERNA--PRAIKELVAKKSPA 410

Query: 421 PLKESEKISKLQQDIQEN 438
            L    +  K +    E+
Sbjct: 411 KLTVQGRGKKPKDAGPES 428


>gi|205352078|ref|YP_002225879.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205271859|emb|CAR36694.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326627120|gb|EGE33463.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 453

 Score =  176 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 164/435 (37%), Positives = 242/435 (55%), Gaps = 22/435 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 QMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++   +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHNLL 357

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKIDIAQHNH--------------ARKNNPIPQ 401
             IEKL++K++  +   G     +   E I   +                  R   P  Q
Sbjct: 358 RDIEKLLKKEIPRITTPGYEPDPSIKAEPIQNGRQQRGGGGRGRGQNQGGAGRSQQPRRQ 417

Query: 402 KSTGFDRRKKNYSSQ 416
            S     + K  + +
Sbjct: 418 DSGAAKAKPKPRTGE 432


>gi|298674218|ref|YP_003725968.1| DEAD/DEAH box helicase domain-containing protein [Methanohalobium
           evestigatum Z-7303]
 gi|298287206|gb|ADI73172.1| DEAD/DEAH box helicase domain protein [Methanohalobium evestigatum
           Z-7303]
          Length = 431

 Score =  176 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 154/367 (41%), Positives = 224/367 (61%), Gaps = 6/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  +  A+ D GY +PTPIQ ++IP ++Q  DV G AQTGTGKTA+F +P L 
Sbjct: 5   TFNELNLSRDIEKAIEDLGYEEPTPIQARSIPYIMQGRDVIGQAQTGTGKTAAFGIPALE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++   +V+     +L PTRELA QVAD   K  +   + V  + GG P E Q K L +
Sbjct: 65  KVDRNSKKVQTI---VLCPTRELANQVADELNKLARYKKIKVLPIYGGQPIERQIKALNK 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA ++I TPGRILDH  R  L ++N+++ V+DEAD MLDMGF   I+ I S +P  RQT 
Sbjct: 122 GAQIVIGTPGRILDHMERHTLSLDNVKMTVLDEADEMLDMGFREDIELILSKLPDKRQTT 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   + K+++ +  NP+ I          T+       +    +        L  
Sbjct: 182 LFSATMPGPIMKMTKKYQDNPELI---KTVHKKLTVPQVEQTYFEVKERSKPEALCRLTD 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +K+ ++FCN KK V NL  +L+ +G+    +HG++ Q+ R K++SNFK G I+ +VA
Sbjct: 239 FYNIKSSLVFCNTKKGVDNLVETLKTRGYLADGLHGDMKQKQRDKVMSNFKNGEIETLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ ++  VFN+DVP   E+Y+HRIGRTGRAG+ GKAFT    ++I  I  I+
Sbjct: 299 TDVAARGIDVENIEVVFNYDVPQDEESYVHRIGRTGRAGKQGKAFTFAFGKEIYKIKDIQ 358

Query: 362 KLIEKKV 368
           K  + K+
Sbjct: 359 KYTQTKI 365


>gi|295397627|ref|ZP_06807702.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
 gi|294974090|gb|EFG49842.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
          Length = 509

 Score =  176 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 152/381 (39%), Positives = 224/381 (58%), Gaps = 14/381 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F ++ LS  ++ A+ + G+ + TPIQ +TIP+ L+  DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFNEMNLSKPLLRAIEEMGFEEATPIQAQTIPMALEGKDVFGQAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + LI+EPTRELA Q  +   + GK   +    + GG     Q K L+
Sbjct: 61  EKVH----ETGGVQALIIEPTRELAVQTGEELYRLGKFKGIHTTTVYGGASIGHQIKLLK 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V+I TPGRILD   RG L +NN+E LV+DEAD ML MGF+  I++I   +P  RQT
Sbjct: 117 KNPPVVIGTPGRILDLIKRGVLKLNNVETLVLDEADEMLKMGFVEDIESIIRELPTERQT 176

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  E++++++NF+ +P  + V T   TA+ I             +   L     
Sbjct: 177 LLFSATVPQEIKRIADNFMNDPATVHVKTKQMTADLI---DQYYSRCKDYEKFDLLTRFI 233

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  +   L ++G+S   IHG++ Q  R+ +L NFK G + ++V
Sbjct: 234 DVQNPELSIVFARTKRRVDEVARGLVERGYSAEGIHGDLSQDKRLGVLRNFKNGKLDILV 293

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G + T V   ++ ++  I
Sbjct: 294 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKEGMSVTFVTSNEMSYLRTI 353

Query: 361 EKLIEKKVDWLNGDLSSLNPP 381
           E L +K+       +S+L PP
Sbjct: 354 EDLTKKQ-------MSALRPP 367


>gi|242067108|ref|XP_002454843.1| hypothetical protein SORBIDRAFT_04g038330 [Sorghum bicolor]
 gi|241934674|gb|EES07819.1| hypothetical protein SORBIDRAFT_04g038330 [Sorghum bicolor]
          Length = 407

 Score =  176 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 199/377 (52%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G+   ++  +   G+ KP+ IQ + +  ++   DV   AQ+GTGKT+   L +  
Sbjct: 35  SFDQMGIKDDLLRGIYGYGFEKPSAIQQRAVLPIINGRDVIAQAQSGTGKTSMISLTVCQ 94

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I++     V+    LIL PTRELA+Q        G + N+ V   IGG       ++LE 
Sbjct: 95  IVDTAVREVQA---LILSPTRELASQTERVMLAIGDHLNVQVHACIGGKSIGEDIRRLEN 151

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML  GF   I ++   +P   Q  
Sbjct: 152 GVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDEADEMLSRGFKDQIYDVYRYLPPELQVC 211

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+  P RI V     T E I+  FVA   +  K   L       
Sbjct: 212 LISATLPHEILEMTSKFMTEPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL--YD 269

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   +    F+V A+HG++ Q+ R  I+  F+ G  ++++ 
Sbjct: 270 TLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSAMHGDMPQQERDAIMGEFRSGDTRVLIT 329

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V K+DI+ +  IE
Sbjct: 330 TDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRKDDIRILRDIE 389

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 390 QYYSTQIDEMPMNVADL 406


>gi|294340821|emb|CAZ89216.1| Cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
           [Thiomonas sp. 3As]
          Length = 666

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 145/398 (36%), Positives = 226/398 (56%), Gaps = 13/398 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL   ++ A+ D GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L  
Sbjct: 9   FAELGLPEPLLQALRDVGYETPSPIQAATIPPLLAGRDVLGQAQTGTGKTAAFALPILAK 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++      R  + L+L PTRELA QVA+ F +Y  +      L I  G  +  Q   L+R
Sbjct: 69  IDCN---ARHTQALVLAPTRELAIQVAEAFARYAAHLPGFNVLPIYGGQSYVPQLASLKR 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH  RG L ++ +  +V+DEAD ML MGFI  +++I    P  RQ  
Sbjct: 126 GAHVVVGTPGRIIDHLERGTLKLDQLAHMVLDEADEMLRMGFIDDVESILKKTPPQRQVA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P+ I +   ++TA  I+  +      +          ++ 
Sbjct: 186 LFSATMPSAIRRIAQTYLRDPQEITIKAATTTATHIQQRYWMVSGLHKLDALTRILEVEP 245

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + M   IIF   K+    L   L  +GF+  A++G++ Q  R +++   K+G + ++VA
Sbjct: 246 FEGM---IIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A   V   +   + AIE
Sbjct: 303 TDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAILFVTPRERHLLRAIE 362

Query: 362 KLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHA 393
           +   + +  +        + S ++  +E+I  A+    
Sbjct: 363 RATRQPITQMQLPSTEAVNDSRISRFMERITEAREQEG 400


>gi|254481835|ref|ZP_05095078.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214037964|gb|EEB78628.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 435

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 170/417 (40%), Positives = 245/417 (58%), Gaps = 6/417 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGLS  ++ A+   GY +P+PIQ K IP VL   DV   AQTGTGKTA+F LP+ 
Sbjct: 1   MTFDQLGLSSALLRAIEKKGYSEPSPIQAKAIPAVLSGKDVMAAAQTGTGKTAAFTLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +      +    R LIL PTRELAAQVA +   YG +  L  A++ GG+   +Q  +L
Sbjct: 61  QRLNASAPIKPHRIRALILTPTRELAAQVAQSVSTYGLHTPLKSAVVFGGVKINSQIAQL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+LI TPGR+LD   +G++    +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 RRGVDILIATPGRLLDLHGQGEVDFGELEILVLDEADRMLDMGFIHDIRRILKLLPAERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT   E++++++ FLQ+P  +EV + ++TA+ +       Y    K+   L + L
Sbjct: 181 NLLFSATFAAEIRELTKKFLQDPIEVEVASRNATADKV---EQWVYPVDKKRKGALLREL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      ++F   K     L   L+K G    AIHGN  Q +R + L +FK G ++++
Sbjct: 238 VEEKCWTQVLVFSRTKHGANRLAQQLDKAGIEATAIHGNKSQGARTRALEDFKSGRLRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN A++Y+HRIGRTGRAG  GKA++LV  ++IK ++ 
Sbjct: 298 VATDIAARGLDIAQLPQVVNFDLPNVAQDYVHRIGRTGRAGASGKAYSLVCADEIKQLND 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           IE+LI++ +      +    P  E    A     R+    P K +G       ++++
Sbjct: 358 IEQLIQRHLPR--EYIDGFEPEHEVPASAPLRKPRQPGRRPPKHSGGGSNAGKHTAK 412


>gi|170758858|ref|YP_001787102.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405847|gb|ACA54258.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 481

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 133/433 (30%), Positives = 229/433 (52%), Gaps = 18/433 (4%)

Query: 1   MD---FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           M+   F +  LS +++ ++   GY  P+ +Q + IPL+L+  D+   ++TG+GKTA+F +
Sbjct: 1   MNKLGFENYELSDEILKSLGRLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSI 60

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           P+   +E        P+ L+L PTRELA Q+ +          L    + G  P   Q +
Sbjct: 61  PICEKIELEEKE---PQVLVLTPTRELALQIKEEISSIALYRRLRCTAIFGKQPMNLQKR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++   +++ TPGR LDH  R  L +  I+  V+DEAD ML+MGFI  ++ +   +P  
Sbjct: 118 DLKQRVHLVVGTPGRTLDHIERENLNLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKN 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R T+LFSAT+ ++++ + + +       E    +    T        Y    K    L Q
Sbjct: 178 RVTMLFSATIPEKIENLCKKY---MNNPENININPENITTGTINQCYYEVEDKDKFFLLQ 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  ++ + N IIFCN ++ V  +   ++K+GF+   +HG ++Q+ R++ +  FKEG  Q
Sbjct: 235 RIIYKEVVDNSIIFCNTRERVDEVLKHMKKKGFNAIGLHGGMEQKDRLETMKKFKEGEFQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +V +D+AARG+ I ++ HV N+++P   E+Y+HRIGRTGRAG+ G A T +    ++ +
Sbjct: 295 FLVCTDVAARGIHIENISHVVNYEMPYEKESYVHRIGRTGRAGKEGVAITFIESNKVRFL 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK-NNPIPQKSTGFDRRKKNYSSQ 416
             IE  IEK++           P LE++   +        N I  K    ++++K+ +  
Sbjct: 355 KDIEDYIEKEIPKRK------EPSLEEVAKGKKIFEENIKNRIKTKVPKDNKKQKDIT-- 406

Query: 417 KSHIPLKESEKIS 429
           K +I     +KI 
Sbjct: 407 KIYISAGRKKKIR 419


>gi|119477017|ref|ZP_01617298.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
 gi|119449824|gb|EAW31061.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
          Length = 431

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 173/429 (40%), Positives = 248/429 (57%), Gaps = 15/429 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  ++ AV D GY  P+PIQ + IP V+   DV   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLSAPILDAVADQGYDTPSPIQAQAIPAVIGGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L  G+ A+    R LIL PTRELAAQV ++   YGKN  L  A++ GG+    Q  KL
Sbjct: 61  ELLIPGKLAQANQARVLILTPTRELAAQVGESVATYGKNLPLRSAVVFGGVKINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DVL+ TPGR+LD +N+  +  +++E+LV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 RQGVDVLVATPGRLLDLYNQRAVKFDHLEVLVLDEADRMLDMGFIHDIKKILAVLPKKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +++++ +++  + NP  I V+  ++T E+++H           K  +     
Sbjct: 181 NLLFSATFSNDIRGLAKGLVNNPVEISVSPANTTVESVQHWIYPVDKNQKSKLLIHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     ++F   K     L   L+  G +  AIHGN  Q +R K L++FK G +Q++
Sbjct: 238 IQDNQWSQVLVFSRTKHGANKLAKQLDGAGINAAAIHGNKSQGARTKALADFKGGKVQVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ ++ K +  
Sbjct: 298 VATDIAARGLDIEQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVSADEFKQLSD 357

Query: 360 IEKLIE-----------KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           IE+LI            K V+ L     +  P             R      + S G   
Sbjct: 358 IERLIGELLQRQSVDGFKPVNELPESRLNRRPQTPSRPKKAKVGHRDGQRSGENSQGHRT 417

Query: 409 RKKNYSSQK 417
           R +N S+Q+
Sbjct: 418 RGRNNSAQR 426


>gi|49903707|gb|AAH75762.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Danio rerio]
          Length = 468

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 152/441 (34%), Positives = 227/441 (51%), Gaps = 13/441 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLS  ++      G  +PT +Q K IP +L   D  G A+TG+GKTA+FVLP+L 
Sbjct: 3   TFESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    V     L+L PTRELA Q+A+ F   GK   L   +++GG+    Q  +L +
Sbjct: 63  KLSEDPYGVF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSK 119

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYI---QNITSLVPFT 177
              V++ TPGR+ DH      +  N I+ L++DEADR+L+ G   +    + I S VP  
Sbjct: 120 KPHVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILSAVPAK 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKCALLQ 236
           RQTLLFSAT+TD LQ++    +  P   E  +   T E   +   +            L 
Sbjct: 180 RQTLLFSATLTDTLQQLQSIAMNRPFFWEHKSDVQTVEELDQRFILTPEKVKDAYLVHLI 239

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q  Q +    + IIF N  K+   L   L +  F   ++H  + QR R   L  FK    
Sbjct: 240 QTFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLVKFKSNVF 299

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++A+D+AARGLDIP V  V N + P   + YIHR+GRT RAGR+G + TLV + DI  
Sbjct: 300 KILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHL 359

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           I+AIE+  + K+     +   +   L      Q N  R+   I  +ST FD +KK    +
Sbjct: 360 INAIEEQNQTKLKEFPIEEKEVLKIL-----TQVNVTRRQCEIKLESTDFDEKKKINKRK 414

Query: 417 KSHIPLKESEKISKLQQDIQE 437
           +  +  K+ +   K + ++++
Sbjct: 415 QMILDGKDPDLEEKRKNELEK 435


>gi|291242437|ref|XP_002741112.1| PREDICTED: eukaryotic translation initiation factor 4A-like
           [Saccoglossus kowalevskii]
          Length = 398

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++GL   ++  +   G+ KP+ IQ + +  V++  DV   AQ+GTGKTA+F + +L 
Sbjct: 26  TFDNMGLREDLLRGIYAYGFEKPSAIQQRAVRPVVKGRDVIAQAQSGTGKTATFSISILQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   ++     IGG       +KL+ 
Sbjct: 86  TLDT---QVRETQALILSPTRELAVQIQKVILALGDYMSVQCHSCIGGTNIGEDIRKLDY 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 143 GQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQIYDVYRYLPPATQVI 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  E+ +++  F+  P RI V     T E I+  FVA   +  K   L       
Sbjct: 203 LFSATLPHEILEMTHKFMTEPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  ++++ 
Sbjct: 261 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGASRVLIT 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 321 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKSDDIRILRDIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 381 QYYSTQIDEMPMNVADL 397


>gi|121635074|ref|YP_975319.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
 gi|120866780|emb|CAM10533.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
 gi|325132439|gb|EGC55132.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M6190]
 gi|325134396|gb|EGC57041.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M13399]
 gi|325138213|gb|EGC60782.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           ES14902]
 gi|325144497|gb|EGC66796.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240013]
 gi|325205865|gb|ADZ01318.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M04-240196]
          Length = 462

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 159/455 (34%), Positives = 238/455 (52%), Gaps = 14/455 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QRLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPTDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    ++P+ IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK I +K+  L  +      P  K   A      K     +KS G  RR  +   ++ 
Sbjct: 360 KIEKYINRKLPELTIE---GMEPTRKRKSAGGKPKGKGGWGDRKSGG--RRGDHKPGKEG 414

Query: 419 HIPLKESE--KISKLQQDIQENDADSLGFRGNMPA 451
                  E  K    ++D  +   +  GF+G   A
Sbjct: 415 FGGKTRGEGFKKEGFKKDGFKKTGE--GFKGKRKA 447


>gi|103487431|ref|YP_616992.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
 gi|98977508|gb|ABF53659.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
          Length = 459

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 152/451 (33%), Positives = 240/451 (53%), Gaps = 18/451 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL   +  A+    Y +PTPIQ + IP +++  D+CGIAQTGTGKTA F LP + 
Sbjct: 3   SFNDFGLHADINRALAAKDYTQPTPIQTQAIPPLMKGRDLCGIAQTGTGKTAGFSLPSIH 62

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L     R      R L+L PTRELAAQ+A +   YG+   L+V+ + GG+P   Q + L
Sbjct: 63  HLLTYPHRPTPRGCRMLVLAPTRELAAQIAQSCRDYGRFTKLSVSTVFGGVPINKQIRDL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD  ++  L ++++EI V+DEAD+M+DMGFI  ++ +  L+P  RQ
Sbjct: 123 SQGVDILVATPGRLLDLIDQRALRLDDVEIFVLDEADQMMDMGFIHSLRRVAKLLPSRRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSATM  E+  +++ FL +P  + V   ++TAE +            K+   L   +
Sbjct: 183 NLFFSATMPKEIAGLADQFLNDPVTVSVAPQATTAEKVRQFATFVEQ---KEKQALLHHV 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   +IF   K     +   L+  G    AIHGN  Q  R   L  F+ G ++L+
Sbjct: 240 IKTSDIDRALIFTRTKHGADRVVRHLKGAGIEAFAIHGNKSQAQRTAALQAFRSGQVRLL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV NF++PN  E Y+HRIGRT RAG  G A + +A ++  +I  
Sbjct: 300 VATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGAEGIAISFIAPDERPYIRD 359

Query: 360 IEKLIEKKVDWL------NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR----R 409
           IE++   + + +      N  + +L  P++     +   +R  +P  Q+     +    +
Sbjct: 360 IERVTRTRAEPMPLPEGFNELVRNLPKPVQP---PRDTGSRGRDPNRQRQDARRQPSGGQ 416

Query: 410 KKNYSSQKSHIPLKESEKISKLQQDIQENDA 440
            +     +   P  E  +  + ++    N +
Sbjct: 417 PRGDRGPRRDAPAGEGAEGQRKRRFRPRNKS 447


>gi|306833030|ref|ZP_07466162.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338]
 gi|304424929|gb|EFM28063.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338]
          Length = 526

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 154/373 (41%), Positives = 231/373 (61%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ AV  AG+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R  V+    L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L 
Sbjct: 61  NKIDTNRNVVQ---ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L ++++E L++DEAD ML+MGF+  I+ I S VP TRQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + ++++   F+QNP+ ++V     T + ++  ++    Q             
Sbjct: 178 LLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +G+    IHG++DQ  R+++L +FK   I ++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+HG++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYLSII 354

Query: 361 EKLIEKKVDWLNG 373
           EKL +K++  L  
Sbjct: 355 EKLTKKRMKGLKP 367


>gi|150390712|ref|YP_001320761.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149950574|gb|ABR49102.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 433

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 164/438 (37%), Positives = 248/438 (56%), Gaps = 11/438 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   +  A+   GY + TPIQ K IP +L+  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MLFENLNIIKPIQRALTTEGYTEATPIQEKAIPSLLKGMDLLGCAQTGTGKTAAFAIPIL 60

Query: 61  T---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 ++     R  + LIL PTRELA Q+AD+FE YGK+  L   ++ GG+    Q K
Sbjct: 61  QGLSSEQRNLKGSRQIQALILAPTRELAIQIADSFETYGKHLGLRTLVIYGGVSQHPQTK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+L+ TPGR+LD  N+  + +N+I+  V+DEAD MLDMG I  ++ I   +P  
Sbjct: 121 SLNRGIDILVATPGRLLDLINQKFVRLNSIKYFVLDEADMMLDMGMIHDVRRIIKYIPAV 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+ FSATM  E+ K+++  L+ P ++E+   SST + IE            +  +   
Sbjct: 181 RQTMFFSATMPAEIAKLADQILKEPVKVEITPVSSTVDIIEQAVYYVNKSNKVQLLIHLL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                  + + ++F   K     +  SLEK G    AIHGN  Q +R   L+NFKE   +
Sbjct: 241 ---KSKAIVSALVFSRTKHGADKIVKSLEKAGLQAQAIHGNKSQNARQLALNNFKERKTR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HV NFD+P   E Y+HRIGRTGRAG  G A +  A+E+   +
Sbjct: 298 ILVATDIAARGIDVEELSHVINFDLPEVPETYVHRIGRTGRAGLGGIAISFCAQEEKNLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS-SQ 416
             I+KLI K V  +        P +E ++ ++    RK++  P+ +   +RR K  S ++
Sbjct: 358 KEIQKLISKSVPVVE---DHPFPLVETLNESKEVFTRKSS-APKTTPANNRRNKEASFAK 413

Query: 417 KSHIPLKESEKISKLQQD 434
           KS     +S   +K ++ 
Sbjct: 414 KSAAKNSKSRYYTKNKRK 431


>gi|223932903|ref|ZP_03624899.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
 gi|330833198|ref|YP_004402023.1| DEAD/DEAH box helicase domain-containing protein [Streptococcus
           suis ST3]
 gi|223898484|gb|EEF64849.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
 gi|329307421|gb|AEB81837.1| DEAD/DEAH box helicase domain protein [Streptococcus suis ST3]
          Length = 526

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 150/412 (36%), Positives = 233/412 (56%), Gaps = 8/412 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  ++ AV  AG+  P+PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTDLQLSEDILLAVEKAGFETPSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    LI+ PTRELA Q  +   K+G+   + V  + GG   E Q K L 
Sbjct: 61  NKIDTNNQAIQ---ALIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L ++ +E L++DEAD ML+MGF+  I+ I   VP +RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPESRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + ++++   F++ P+ +++     T   ++  ++                  
Sbjct: 178 LLFSATMPEPIKRIGVKFMKEPEHVKIAAKELTNVNVDQYYLRVKEHEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLAII 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           E L +K++  L    ++     E           +        + FD+ KK+
Sbjct: 355 EDLTKKRMKGLKP--ATAQEAFEAKKKVALKKIEREMADETIRSNFDKFKKD 404


>gi|116668332|pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
           A Resolution
          Length = 374

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 132/377 (35%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 2   TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA QV       G   N+     IGG       +KL+ 
Sbjct: 62  CLDI---QVRETQALILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 119 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 179 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 237 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 297 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIRVLRDIE 356

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 357 QYYSTQIDEMPMNVADL 373


>gi|317477042|ref|ZP_07936284.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906835|gb|EFV28547.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 428

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 142/438 (32%), Positives = 240/438 (54%), Gaps = 23/438 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ ++IP++L+  D+  +AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELKLNDNVLEALDAMRFDECTPIQEQSIPVILEGRDLIAVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
             L +G         +++ PTRELA Q+    E +     ++   + GG     FE Q +
Sbjct: 61  NKLSEGGHPEDSINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++++ L NP  +++       +       A Y  Y  +   +  
Sbjct: 181 RQTIMFSATMPAKIQQLAKSILNNPAEVKLAVSKPAEKI----VQAAYVCYENQKLGIIH 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L ++ T +  IIF + K  V  +  +L++   +V  +H +++Q  R +++  FK G I 
Sbjct: 237 SLFAEQTPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V +++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-------- 409
             IE  +EK++  +        P  E++  A     R N+   +   G  RR        
Sbjct: 357 KGIENFLEKEIYKI--------PVPEELGEAPEYKPRSNDGRKRSYKGGGRRNAGSGKGG 408

Query: 410 KKNYSSQKSHIPLKESEK 427
            +N S ++   P   ++K
Sbjct: 409 NRNNSRRREGRPSSGTKK 426


>gi|261212543|ref|ZP_05926828.1| cold-shock DEAD-box protein A [Vibrio sp. RC341]
 gi|260838474|gb|EEX65130.1| cold-shock DEAD-box protein A [Vibrio sp. RC341]
          Length = 639

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 149/463 (32%), Positives = 240/463 (51%), Gaps = 35/463 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N      L I  G     Q + L
Sbjct: 66  NKLNLSQHK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P T Q
Sbjct: 123 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPETAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL+NP+ ++V   + T   +E  +         +        
Sbjct: 183 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLET 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 243 EET---DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE++    ++ +        P  +K+  ++                  +  +  ++ K  
Sbjct: 360 IERVTRSSMEEIQ------LPHRDKVAESR----------------LTKLGQELAADKEF 397

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
             L+   ++ +  Q   E DA +L       A +L + +GK  
Sbjct: 398 SSLERFAELVEKLQASLEIDATTLA------AILLKRQQGKRP 434


>gi|255017210|ref|ZP_05289336.1| hypothetical protein LmonF_04463 [Listeria monocytogenes FSL
           F2-515]
          Length = 394

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 150/372 (40%), Positives = 225/372 (60%), Gaps = 6/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++ GL  K+V +V   G+ + TPIQ KTIPL L+  D+ G AQTGTGKTA+F LPM+ 
Sbjct: 3   KFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIH 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++   +    + LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++
Sbjct: 63  KIDQ---KSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L ++++E LV+DEAD ML+MGFI  I+ I   VP  RQTL
Sbjct: 120 NPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++++ E F+ +P+ I +     TA  I          + K+   +   L  
Sbjct: 180 LFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLI---EQFFVKVHEKEKFDVLSRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA
Sbjct: 237 VQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E
Sbjct: 297 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVE 356

Query: 362 KLIEKKVDWLNG 373
           +  +K++  L  
Sbjct: 357 ETTKKRMQPLQA 368


>gi|227112916|ref|ZP_03826572.1| ATP-dependent RNA helicase SrmB [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 441

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 141/445 (31%), Positives = 226/445 (50%), Gaps = 14/445 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++L L   ++ A+ D GY +PT IQ + IP  ++  DV G A TGTGKTA+++LP + 
Sbjct: 5   NFSELDLDESLLDALRDMGYERPTVIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++  R +   PR LIL PTRELA QVAD    +  + +L +A + GG+ +    +   
Sbjct: 65  HLIDFPRKKSGPPRILILTPTRELAMQVADQARAFAAHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+  +  K     L N     + +  S  E  +       A   K    L     
Sbjct: 185 MLFSATLEGDAIKDFAERLLNEPVE-IESDPSRRERKKILQWYYRADDLKHKTALLCHQL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   IIF  +++ V  L   L + G + C + G + Q  R + +    +G + ++V
Sbjct: 244 KQPDVTRSIIFVRKRERVHELVAWLREAGINSCYLEGEMVQAKRNEAIKRLSDGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HVFNFD+P  A+ Y+HRIGRTGRAGR G A + V   D   +  I
Sbjct: 304 ATDIAARGIDIDDVSHVFNFDLPRTADTYLHRIGRTGRAGRKGCAISFVEAHDHLLLGKI 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
            + + + +             +E++       + K    P K     R++K    ++   
Sbjct: 364 SRYLNEPLK---------PRVIEELRPVTKAPSAKTTGKPSKKVLAKRQEKKEKEKEKVK 414

Query: 421 PL---KESEKISKLQQDIQENDADS 442
                ++S+ + K +Q  ++ D  S
Sbjct: 415 VKVRDRDSKNVGKRRQPTKKTDEPS 439


>gi|116872279|ref|YP_849060.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741157|emb|CAK20277.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 518

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 150/372 (40%), Positives = 225/372 (60%), Gaps = 6/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++ GL  K+V +V   G+ + TPIQ KTIPL L+  D+ G AQTGTGKTA+F LPM+ 
Sbjct: 3   KFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIH 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++   +    + LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++
Sbjct: 63  KIDQ---KSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L ++++E LV+DEAD ML+MGFI  I+ I   VP  RQTL
Sbjct: 120 NPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++++ E F+ +P+ I +     TA  I          + K+   +   L  
Sbjct: 180 LFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLI---EQFFVKVHEKEKFDVLSRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA
Sbjct: 237 VQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E
Sbjct: 297 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVE 356

Query: 362 KLIEKKVDWLNG 373
           +  +K++  L  
Sbjct: 357 ETTKKRMQPLQA 368


>gi|39996017|ref|NP_951968.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
 gi|39982782|gb|AAR34241.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
          Length = 447

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 162/441 (36%), Positives = 241/441 (54%), Gaps = 10/441 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF   G  P V   +  AGY  PTPIQ + IP V+   DV G+AQTGTGKTA+F LP+L
Sbjct: 1   MDFKSFGFHPAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++G       R L++ PTRELA Q+ D+F   G+   L    + GG+    Q +KL+
Sbjct: 61  HRLQQG--ERGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA+V++  PGR+LDH  +G + ++ +E+LV+DEAD+M DMGF+P I+ +   +P  RQT
Sbjct: 119 AGAEVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  +++ ++++ L +P  ++V T +         +       +     L +   
Sbjct: 179 LLFSATMPIDIRTLAQDILVDPVTVQVGTVAPAVTVAHALYPVEQHLKTPLLLELLR--- 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ +IF   K     L   LEK G+   ++ GN+ Q  R   L  F++GT Q++V
Sbjct: 236 -HTDTESVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV N+D+P+ AE YIHRIGRTGRA R G AFTLV  +D   + AI
Sbjct: 295 ATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGAMVRAI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+ +   ++         + P  K D+     AR      Q     ++ KK  ++     
Sbjct: 355 ERSLGAPIERRTVQGFDYSVPAPKKDV---EFARPPREPRQARPHANQPKKGGAAASPSA 411

Query: 421 PLKESE-KISKLQQDIQENDA 440
             + S  K S  +Q  Q   A
Sbjct: 412 SGRPSHPKDSGRRQPGQGAPA 432


>gi|16802907|ref|NP_464392.1| hypothetical protein lmo0866 [Listeria monocytogenes EGD-e]
 gi|224499403|ref|ZP_03667752.1| hypothetical protein LmonF1_06772 [Listeria monocytogenes Finland
           1988]
 gi|224503166|ref|ZP_03671473.1| hypothetical protein LmonFR_11698 [Listeria monocytogenes FSL
           R2-561]
 gi|254827809|ref|ZP_05232496.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N3-165]
 gi|254832169|ref|ZP_05236824.1| hypothetical protein Lmon1_12514 [Listeria monocytogenes 10403S]
 gi|254898962|ref|ZP_05258886.1| hypothetical protein LmonJ_04075 [Listeria monocytogenes J0161]
 gi|254911550|ref|ZP_05261562.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J2818]
 gi|254935876|ref|ZP_05267573.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes F6900]
 gi|16410269|emb|CAC98944.1| lmo0866 [Listeria monocytogenes EGD-e]
 gi|258600190|gb|EEW13515.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N3-165]
 gi|258608464|gb|EEW21072.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes F6900]
 gi|293589496|gb|EFF97830.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J2818]
          Length = 520

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 150/372 (40%), Positives = 225/372 (60%), Gaps = 6/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++ GL  K+V +V   G+ + TPIQ KTIPL L+  D+ G AQTGTGKTA+F LPM+ 
Sbjct: 3   KFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIH 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++   +    + LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++
Sbjct: 63  KIDQ---KSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L ++++E LV+DEAD ML+MGFI  I+ I   VP  RQTL
Sbjct: 120 NPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++++ E F+ +P+ I +     TA  I          + K+   +   L  
Sbjct: 180 LFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLI---EQFFVKVHEKEKFDVLSRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA
Sbjct: 237 VQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E
Sbjct: 297 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVE 356

Query: 362 KLIEKKVDWLNG 373
           +  +K++  L  
Sbjct: 357 ETTKKRMQPLQA 368


>gi|47094873|ref|ZP_00232487.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 1/2a
           F6854]
 gi|284801196|ref|YP_003413061.1| hypothetical protein LM5578_0946 [Listeria monocytogenes 08-5578]
 gi|284994338|ref|YP_003416106.1| hypothetical protein LM5923_0900 [Listeria monocytogenes 08-5923]
 gi|47016755|gb|EAL07674.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 1/2a
           F6854]
 gi|284056758|gb|ADB67699.1| hypothetical protein LM5578_0946 [Listeria monocytogenes 08-5578]
 gi|284059805|gb|ADB70744.1| hypothetical protein LM5923_0900 [Listeria monocytogenes 08-5923]
          Length = 522

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 150/372 (40%), Positives = 225/372 (60%), Gaps = 6/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++ GL  K+V +V   G+ + TPIQ KTIPL L+  D+ G AQTGTGKTA+F LPM+ 
Sbjct: 5   KFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIH 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++   +    + LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++
Sbjct: 65  KIDQ---KSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L ++++E LV+DEAD ML+MGFI  I+ I   VP  RQTL
Sbjct: 122 NPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++++ E F+ +P+ I +     TA  I          + K+   +   L  
Sbjct: 182 LFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLI---EQFFVKVHEKEKFDVLSRLLD 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA
Sbjct: 239 VQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E
Sbjct: 299 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVE 358

Query: 362 KLIEKKVDWLNG 373
           +  +K++  L  
Sbjct: 359 ETTKKRMQPLQA 370


>gi|317404315|gb|EFV84742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
          Length = 413

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 159/383 (41%), Positives = 230/383 (60%), Gaps = 8/383 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+  ++ A+ D GY  PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L 
Sbjct: 6   SFADLGLADSLLRAIADTGYTAPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFTLPILH 65

Query: 62  ILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L + +    +   PR LIL PTREL AQVA++ + YGK+ +LT  ++ GG+    Q   
Sbjct: 66  LLMQSKPEARKAGRPRCLILTPTRELTAQVAESVQTYGKHTSLTSMVMFGGVNINPQISA 125

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+L+ TPGR+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ I +L+P  R
Sbjct: 126 LRKPLDILVATPGRLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKILALLPKQR 185

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +DE++ ++   L NP  + V   ++  E +          + +        
Sbjct: 186 QNLLFSATFSDEIRSLARGVLNNPGEVSVTPRNTATELVTQTVHLVEQHHKRDLISHI-- 243

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +      ++F   K     L   L K G +  AIHGN  Q +R + L+ FK+GT+ +
Sbjct: 244 -IRESGWHQVLVFTRTKHGANRLAEKLVKDGLTAAAIHGNKSQSARTRALAGFKDGTVTV 302

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV   +IK + 
Sbjct: 303 LVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDNSEIKLLK 362

Query: 359 AIEKLIEKKVDWLNGDLSSLNPP 381
            IE+LI+K ++     ++   PP
Sbjct: 363 DIERLIKKTIERKP--VADWTPP 383


>gi|38198641|ref|NP_938179.1| probable ATP-dependent RNA helicase DDX49 [Danio rerio]
 gi|28839770|gb|AAH47834.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Danio rerio]
          Length = 468

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 152/441 (34%), Positives = 228/441 (51%), Gaps = 13/441 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLS  ++      G  +PT +Q K IP +L   D  G A+TG+GKTA+FVLP+L 
Sbjct: 3   TFESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    V     L+L PTRELA Q+A+ F   GK   L   +++GG+    Q  +L +
Sbjct: 63  KLSEDPYGVF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSK 119

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYI---QNITSLVPFT 177
              V++ TPGR+ DH      +  N I+ L++DEADR+L+ G   +    + I S VP  
Sbjct: 120 KPHVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILSAVPAK 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKCALLQ 236
           RQTLLFSAT+TD LQ++    +  P   E  +   T E   +   +            L 
Sbjct: 180 RQTLLFSATLTDTLQQLQSIAMNRPFFWEHKSDVQTVEELDQRFILTPEKVKDAYLVHLI 239

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q  Q +    + IIF N  K+   L   L +  F   ++H  + QR R   L+ FK    
Sbjct: 240 QTFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLAKFKSNVF 299

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++A+D+AARGLDIP V  V N + P   + YIHR+GRT RAGR+G + TLV + DI  
Sbjct: 300 KILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHL 359

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           I+AIE+  + K+     +   +   L      Q N  R+   I  +ST FD +KK    +
Sbjct: 360 INAIEEQNQTKLKEFPIEEKEVLKIL-----TQVNVTRRQCEIKLESTDFDEKKKINKRK 414

Query: 417 KSHIPLKESEKISKLQQDIQE 437
           +  +  K+ +   K + ++++
Sbjct: 415 QMILDGKDPDLEEKRKNELEK 435


>gi|331005215|ref|ZP_08328608.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989]
 gi|330420958|gb|EGG95231.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989]
          Length = 464

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 166/390 (42%), Positives = 232/390 (59%), Gaps = 7/390 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV D GY  P+PIQ K IP+VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTTLGLSDPILKAVTDKGYDTPSPIQAKAIPVVLEGRDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            IL KG+  R    R L+L PTRELAAQVA++ E YGK+  L  A++ GG+    Q  KL
Sbjct: 61  EILSKGQPARANQVRALVLTPTRELAAQVAESVETYGKHLKLRSAVVFGGVKINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+LI TPGR+LD   +  +  N +EIL++DEADRMLDMGFI  I+ I   +P  RQ
Sbjct: 121 RGGVDILIATPGRLLDLHQQNAMSFNKLEILILDEADRMLDMGFINDIRKILKALPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +D+++ +++  +  P  I   + +    T        +    K+   L   L
Sbjct: 181 NLMFSATFSDDIRDLAKTIVNKPIEI---SVTPKNSTATTVTQWIHPVDKKQKPSLLVEL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  ++F   K     L   LEK      AIHGN  Q +R + L++FK G ++++
Sbjct: 238 IYQHKWEQVLVFSRTKHGANKLATFLEKHSIKAAAIHGNKSQGARTRALADFKAGKVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N D+PN AE+Y+HRIGRTGRAG  G+A +LV+ ++I+ +  
Sbjct: 298 VATDIAARGLDIEQLPQVVNIDLPNVAEDYVHRIGRTGRAGATGQAVSLVSADEIQQLQD 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
           IE+LI+K    L   L     P+  +  ++
Sbjct: 358 IERLIQK---LLPRKLVDGYEPIHDVPESK 384


>gi|171693103|ref|XP_001911476.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946500|emb|CAP73301.1| unnamed protein product [Podospora anserina S mat+]
          Length = 488

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + ML 
Sbjct: 115 TFESMSLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQ 174

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 175 VIDTA---VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDY 231

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 232 GQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVV 291

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 292 VVSATLPHDVLTMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDL--YD 349

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG++ Q+ R  I+ +F++G  +++++
Sbjct: 350 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLIS 409

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 410 TDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVRILRDIE 469

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 470 LYYSTQIDEMPMNVADL 486


>gi|157371914|ref|YP_001479903.1| ATP-dependent RNA helicase SrmB [Serratia proteamaculans 568]
 gi|157323678|gb|ABV42775.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
          Length = 441

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 145/445 (32%), Positives = 237/445 (53%), Gaps = 16/445 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++L L  +++ A+ D GY +PT IQ + IP  +   DV G A TGTGKTA+F+LP + 
Sbjct: 5   NFSELELDERLINALRDKGYERPTAIQAEAIPPAMDGRDVLGSAPTGTGKTAAFLLPVLQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +   + +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ T GR+L +          +E L++DEADRMLDMGF   I+ I++   +  QT
Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRNQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT   D +++ +E  L+ P  +E +      + I   +        K    L   L
Sbjct: 185 LLFSATLEGDAIREFAERILKEPVEVEADPSRRERKKILQWYYRADDVVHKTA--LLVHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  ++  +IF  +++ V  L   L + G + C + G + Q  R + +    +G + ++
Sbjct: 243 LKQPDVQKSVIFVRKRERVHELAAWLREAGINTCYLEGEMVQAKRNEAVKRMMDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDVAARGLDILDITHVFNFDMPRTADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGK 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR---RKKNYSSQ 416
           + + + + +             +E++  +    + K+N  P K     R   ++KN    
Sbjct: 363 VGRYLNEPLK---------ARVIEELRPSTKVPSEKSNGKPSKKVIAKRAADKEKNKEKA 413

Query: 417 KSHIPLKESEKISKLQQDIQENDAD 441
           K  +  ++++ + K +Q   + +++
Sbjct: 414 KVKVRHRDAKNVGKRRQPKAKPESN 438


>gi|4104820|gb|AAD02177.1| RNA helicase [Anabaena variabilis]
          Length = 425

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 165/421 (39%), Positives = 239/421 (56%), Gaps = 17/421 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS +++ AV + GY KPTPIQ+++IP VL   D+   AQTGTGKTASF LP+L
Sbjct: 1   MSFSHLGLSNEIINAVTELGYTKPTPIQMQSIPAVLSGRDLLRGAQTGTGKTASFTLPLL 60

Query: 61  TILEKGRARVRMPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               K   +       I      PTRELAAQV  +   YGK   L   ++ GG+    Q 
Sbjct: 61  HYYPKIVLKALQCFLTIRALILTPTRELAAQVESSVRDYGKYLKLNSMVMFGGVSINPQK 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++L+   D+L+ TPGR+LDH  +G + ++ IEILV+DEADRMLDMGFI  I+ I SL+P 
Sbjct: 121 QRLKGRVDILVATPGRLLDHVQQGTVNLSQIEILVLDEADRMLDMGFIRDIRRILSLLPK 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLF AT +D++++++   L  P+ IEV   + TA+T+            +      
Sbjct: 181 QRQNLLFFATFSDKIKELAAGLLNRPQMIEVARRNVTADTVTQKVYKIERDRKRDL---L 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L  +D     ++F   K     L   L  +     AIHGN  Q +R   L+ FK G++
Sbjct: 238 AHLIRKDNWYQVLVFTRTKYGADRLVKQLGHERIQALAIHGNKSQSARTHALAKFKNGSL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARGLDI ++ +V NFD+P   E+Y+HRIGRTGRAG  G+A +LV+ ++   
Sbjct: 298 QVLVATDIAARGLDISELPYVVNFDLPYVPEDYVHRIGRTGRAGASGEAVSLVSADEYHL 357

Query: 357 IDAIEKLIEKKVDW-----LNGDLSSLNPP-----LEKIDIAQHNHARKNNPIPQKSTGF 406
           +  IEKLIEK++ +     +  +  +   P      +K   +QH        +P+KS   
Sbjct: 358 LADIEKLIEKRLPFELVAGIGANSQAKPEPTQDERKQKPKDSQHQPRSAAQGVPKKSGKK 417

Query: 407 D 407
            
Sbjct: 418 R 418


>gi|157374161|ref|YP_001472761.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157316535|gb|ABV35633.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 435

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 161/436 (36%), Positives = 248/436 (56%), Gaps = 15/436 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P+++ A+ + GY K TP+Q + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFAPEILRAISECGYQKMTPVQQEAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       +   T   IL PTRELA+Q+ADN   Y K   ++V  + GG+  E Q +K
Sbjct: 61  QKMFDNPTETQRSNTRALILTPTRELASQIADNINDYSKYMEVSVLTIYGGVKLETQAQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RGAD+++ TPGR+L+H     L ++N++ +V+DEADRMLDMGFI  IQ I   V   R
Sbjct: 121 LKRGADIIVATPGRLLEHLQACNLNLSNVDFMVLDEADRMLDMGFISDIQKIMQAVNKNR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  ++K++ + L  PK I V++ +STA+T+         +  ++       
Sbjct: 181 QNLLFSATFSSAVKKLANDMLVKPKLISVDSQNSTADTVSQVVYPVEQRRKRELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F   +     L   L   G +   +HG   Q +R + L  FKEG ++ 
Sbjct: 239 -IGKKNWQQVLVFTATRDAADKLVKELNLDGITSAVVHGEKAQGNRRRALREFKEGKVRA 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDI D+ +V N+D+P  AE+Y+HRIGRTGRAG+ G A +LV++E+ + + 
Sbjct: 298 LVATEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEERTLA 357

Query: 359 AIEKLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNP----IPQKSTGFDR 408
            IEKLI K++  +       G    L   ++K         R++N     I +K+ G  R
Sbjct: 358 DIEKLIGKQLRRITVPGYEVGSRELLIKQIQKRRSFAKKQQREDNTGAQMIAEKNLGSRR 417

Query: 409 RKKNYSSQKSHIPLKE 424
            K   SS K+   +K+
Sbjct: 418 VKVKNSSNKAPTKVKK 433


>gi|55963471|emb|CAI11913.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Danio rerio]
          Length = 468

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 151/441 (34%), Positives = 228/441 (51%), Gaps = 13/441 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLS  ++      G  +PT +Q K IP +L   D  G A+TG+GKTA+FVLP+L 
Sbjct: 3   TFESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    V     L+L PTRELA Q+A+ F   GK   L   +++GG+    Q  +L +
Sbjct: 63  KLSEDPYGVF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSK 119

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYI---QNITSLVPFT 177
              V++ TPGR+ DH      +  N I+ L++DEADR+L+ G   +    + I S VP  
Sbjct: 120 KPHVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILSAVPVK 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP-SSTAETIEHCFVATYAQYSKKCALLQ 236
           RQTLLFSAT+TD LQ++    +  P   E  +   +  E  +   +            L 
Sbjct: 180 RQTLLFSATLTDTLQQLQSIAMNRPFFWEHKSDVQTVKELDQRFILTPEKVKDAYLVHLI 239

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q  Q +    + IIF N  K+   L   L +  F   ++H  + QR R   L+ FK    
Sbjct: 240 QTFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLAKFKSNVF 299

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++A+D+AARGLDIP V  V N + P   + YIHR+GRT RAGR+G + TLV + DI  
Sbjct: 300 KILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHL 359

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           I+AIE+  + K+     +   +   L      Q N  R+   I  +ST FD +KK    +
Sbjct: 360 INAIEEQNQTKLKEFPIEEKEVLKIL-----TQVNVTRRQCEIKLESTDFDEKKKINKRK 414

Query: 417 KSHIPLKESEKISKLQQDIQE 437
           +  +  K+ +   K + ++++
Sbjct: 415 QMILDGKDPDLEEKRKNELEK 435


>gi|301168896|emb|CBW28490.1| ATP-dependent RNA helicase [Haemophilus influenzae 10810]
          Length = 613

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 140/405 (34%), Positives = 231/405 (57%), Gaps = 20/405 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 5   ITFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E++ K      +  L GG  ++ Q + L
Sbjct: 65  AQIDPSE---KHPQMLVMAPTRELAIQVADACEQFVKYAQGTRIVTLYGGQRYDIQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 122 KQGAQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+ +P+ +++       E       + +  +  +        
Sbjct: 182 TALFSATMPEPIRRITKRFMNDPQEVKIKV---NNENAPDIDQSCWYVHGVRKNEALLRF 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 239 LEVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 299 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 358

Query: 360 IEKLIEKKVDWLN-------------GDLSSLNPPLEKIDIAQHN 391
           IE L++K ++ +                ++ +   LE  D+ Q+ 
Sbjct: 359 IEHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYR 403


>gi|163838674|ref|NP_001106217.1| eukaryotic initiation factor 4A-III [Bombyx mori]
 gi|110376569|gb|ABG73410.1| eIF4AIII protein [Bombyx mori]
          Length = 405

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L 
Sbjct: 33  TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+      ++   LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 93  TLDTTLRETQV---LILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDY 149

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 150 GQHVVSGTPGRVFDMIRRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 209

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 210 LISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 267

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   +++  F+V ++HG++ Q+ R  I+  F+ G  ++++ 
Sbjct: 268 TLTITQAVIFCNTKRKVDWLTQKMQEANFTVSSMHGDMPQKERDNIMKEFRSGQSRVLIT 327

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 328 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIE 387

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 388 QYYSTQIDEMPMNVADL 404


>gi|75908173|ref|YP_322469.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC
           29413]
 gi|75701898|gb|ABA21574.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC
           29413]
          Length = 426

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 171/422 (40%), Positives = 243/422 (57%), Gaps = 17/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS +++ AV + GY KPTPIQ+++IP VL   D+   AQTGTGKTASF LP+L
Sbjct: 1   MSFSHLGLSNEIIRAVTELGYTKPTPIQMQSIPAVLSGRDLLAGAQTGTGKTASFTLPLL 60

Query: 61  T-----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  L+   +     R LIL PTRELAAQV  +   YGK  NL   ++ GG+    Q
Sbjct: 61  HLLSQDSLKSASSPSSPIRALILTPTRELAAQVESSVRDYGKYLNLNSMVMFGGVSINPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L+   D+L+ TPGR+LDH  +G + ++ IEILV+DEADRMLDMGFI  I+ I SL+P
Sbjct: 121 KQRLKGRVDILVATPGRLLDHVQQGTVNLSQIEILVLDEADRMLDMGFIRDIRRILSLLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLF AT +D++++++   L  P+ IEV   + TA+T+            +     
Sbjct: 181 KQRQNLLFFATFSDKIKELAAGLLNRPQMIEVARRNVTADTVTQKVYKIERDRKRDL--- 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L  +D     ++F   K     L   L  +     AIHGN  Q +R   L+ FK G+
Sbjct: 238 LAHLIRKDNWYQVLVFTRTKYGADRLVKQLGHERIQALAIHGNKSQSARTHALAKFKNGS 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARGLDI ++ +V NFD+P   E+Y+HRIGRTGRAG  G+A +LV+ ++  
Sbjct: 298 LQVLVATDIAARGLDISELPYVVNFDLPYVPEDYVHRIGRTGRAGASGEAVSLVSADEYH 357

Query: 356 HIDAIEKLIEKKVDWL----NGDLSSLNPPLEKIDIAQHNHARKNNPIPQ-----KSTGF 406
            +  IEKLIEK++ +      G  S   P   + +  Q     K+ P        K +G 
Sbjct: 358 LLADIEKLIEKRLPFELVAGIGANSQTKPEPSQDERKQKPKDSKHQPRSAAQAVPKKSGK 417

Query: 407 DR 408
            R
Sbjct: 418 KR 419


>gi|172087635|ref|YP_203439.2| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|226739701|sp|Q5E8U5|RHLB_VIBF1 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|171902232|gb|AAW84551.2| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 432

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 143/423 (33%), Positives = 216/423 (51%), Gaps = 9/423 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FADLGL P+V+  +   G++K TPIQ K +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  NFADLGLQPQVIDGLNAKGFIKCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      ++  PR +I+ PTRELA Q+ ++ E    +  L  AL  GG  +E Q +
Sbjct: 70  HLLTTPAPEGRKITQPRAIIMAPTRELAIQIFNDAESLIASTGLKAALAYGGERYEKQQQ 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +E+G D+LI T GRI+D + +G +    I+ +V+DEADRM D+GFI  I+ I   +P  
Sbjct: 130 VIEQGVDILIGTTGRIIDFYKQGHIDFKMIQAVVLDEADRMFDLGFIKDIRFIFRRMPAP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T   +     F    +  E        +T        +   +     L Q
Sbjct: 190 TERLNMLFSATLSYRVQELAFEH-MQEPEHVVVEPEQKTGHRIKEELFYPSNDHKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L      V  + G++ Q+ R +IL  F +G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHKCESVWGHLAADKHRVGLLTGDVPQKKRERILEEFTQGNVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFNFD+PN AE+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGASGNSISFACEEYAINL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE+ IE  +   + D    L  L  PL      Q N    N      +    R ++  
Sbjct: 369 PAIEEYIEHSIPQSDYDASALLEDLPAPLRLQRRPQQNRRNNNGQRQGGNRKHTRPRQPR 428

Query: 414 SSQ 416
           ++Q
Sbjct: 429 NTQ 431


>gi|34498347|ref|NP_902562.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
 gi|34104201|gb|AAQ60560.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 439

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 152/399 (38%), Positives = 237/399 (59%), Gaps = 6/399 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F+DLG++P ++ A+  AGY  PT +Q + +P  +   D+   AQTG+GKTA+F+LP +
Sbjct: 1   MTFSDLGIAPTILRALQAAGYENPTAVQAEAVPAAIAGRDLLVSAQTGSGKTAAFLLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKK 118
             + E+  A+ + PR L+L PTRELA QV  N  +YGK+   +  A L+GG  F  Q + 
Sbjct: 61  TKLSERSTAKGQGPRVLVLTPTRELAQQVEKNALEYGKDLRWMRTACLVGGSSFGYQIRA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R  D+++ TPGR++DH   G++  + +E+LV+DEADRMLDMGFI  I+ I    P TR
Sbjct: 121 LSRPIDLIVATPGRLMDHMRSGRIDFSRLEMLVLDEADRMLDMGFIDDIEAIVKATPETR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT+   + +++E   ++P+RIE+    ++  TIE   +       K    L   
Sbjct: 181 QTVLFSATLDGIVGRMAEKMTRDPQRIEIARTETSGGTIEEHLLYADDLNHKHR--LLDY 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +      +IF   K     L   L  QG+S   +HG++ Q  R + L++ + G I++
Sbjct: 239 ILKESGFDQCVIFSATKAYSEELADKLSDQGYSAACLHGDMPQSWRNRTLNDLRRGRIKV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV NFD+P +AE+Y+HRIGRTGRAGR G A TL   ++   + 
Sbjct: 299 LVATDVAARGIDVPTITHVVNFDLPKQAEDYVHRIGRTGRAGRDGTAITLAESKEFHKVR 358

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
            IE+ +++++    G +  L P        + N+  K  
Sbjct: 359 RIEQYLKRQITE--GVIDGLEPTRRPPKGPRRNNNGKGG 395


>gi|297707298|ref|XP_002830447.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Pongo
           abelii]
          Length = 765

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 154/465 (33%), Positives = 242/465 (52%), Gaps = 23/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 187 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 246

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 247 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 306

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 307 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 366

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 367 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 426

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 427 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 486

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 487 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 546

Query: 360 IEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K  +                  K++ +  D+ ++     +    Q + A+ N      
Sbjct: 547 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLL 606

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             G +   +    ++     KE  K  K+ + +QE D   L  RG
Sbjct: 607 EKGKEAVVQE--PERGWFQTKEERKKEKIAKALQEFD---LALRG 646


>gi|237748776|ref|ZP_04579256.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
 gi|229380138|gb|EEO30229.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
          Length = 465

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 152/442 (34%), Positives = 240/442 (54%), Gaps = 39/442 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL P +  A+ D  Y KPTP+Q K IP  ++  D+   +QTG+GKTA+F+LP L
Sbjct: 1   MTFEALGLHPLIQKALADIHYDKPTPVQEKAIPAGIEGKDLLVSSQTGSGKTAAFMLPAL 60

Query: 61  TIL------------------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYG 96
                                      EK R     P+ L+L PTRELA Q+  + E Y 
Sbjct: 61  HRFASVPFEKSDKKTFNQKRQAARAKGEKVRYEPAHPKMLVLTPTRELAMQIVQSSEDYS 120

Query: 97  KNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEA 155
               +     ++GG+P+  Q + L +  ++L+ TPGR++DH + GK+  + +EILV+DEA
Sbjct: 121 AYLKHFRTVAILGGMPYPKQMQLLAKNPEILVATPGRLIDHMHSGKIRFDQLEILVLDEA 180

Query: 156 DRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
           DRMLDMGFI  I+ I +  P TRQT+LFSAT+   +  ++    ++P+ I +++ +S  E
Sbjct: 181 DRMLDMGFIDDIETIIAATPETRQTMLFSATLDGIVGNMARKITRDPELIHIHSVASRHE 240

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
            I+           K    L   L    ++   ++F   K++   +   L   GFS  A+
Sbjct: 241 NIDQMIHFVDDLPHKNR--LLDHLLHDRSLDQALVFTATKRDADIVADRLAIAGFSAAAL 298

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG++ Q +R + L+  + G ++++VA+D+AARG+DIP++ HV N+D+P   E+Y+HRIGR
Sbjct: 299 HGDMPQGARNRTLTKLRRGQVKILVATDVAARGIDIPNITHVVNYDLPKFPEDYVHRIGR 358

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           TGRAGRHG A +LV   D  ++  IE+  ++ +            P+  I+  +   + K
Sbjct: 359 TGRAGRHGLAISLVNHNDNNNVRKIERFTKQSI------------PVNVIEGFEPKLSFK 406

Query: 396 NNPIPQKSTGFDRRKKNYSSQK 417
             P  +K +G+    K  +S K
Sbjct: 407 AAPSKRKPSGWKPGSKRNASPK 428


>gi|209809436|ref|YP_002264974.1| ATP-dependent RNA helicase [Aliivibrio salmonicida LFI1238]
 gi|208010998|emb|CAQ81411.1| ATP-dependent RNA helicase [Aliivibrio salmonicida LFI1238]
          Length = 450

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 124/440 (28%), Positives = 208/440 (47%), Gaps = 12/440 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           + F DLGL  +++  +      KPT IQ K +P+ +   DV   ++TG+GKT +FVLPM 
Sbjct: 6   LQFKDLGLDNRLLKNLAHQNIKKPTEIQRKAVPVAMAGKDVLASSKTGSGKTLAFVLPML 65

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L+        PR +IL PTRELA QV  +            AL+ GG  F  Q   L
Sbjct: 66  HKSLKSKSFSKNDPRAVILAPTRELAKQVYMHLRAMLGGLTYDAALITGGENFNDQVNAL 125

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +    ++ TPGR+ DH     L +N +E+L++DEADRMLD+GF  ++Q I +     R+
Sbjct: 126 RKFPKFIVATPGRLADHLEHQSLFLNGLEMLILDEADRMLDLGFAEHLQKIHAAANHRRR 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D                 V+   ST +  +         +      L   +
Sbjct: 186 QTLMFSATLDHEAVTKFAGNMLDNPKVVSVGLSTDQHADITQSFYLCDHLDHKQALLDKI 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     +IF   + +   L   L ++     A+ G+++Q +R  I+S F+    +++
Sbjct: 246 IETEKYFQIMIFTATRADTDRLTDLLNERKLKAVALSGDMNQTARNNIMSQFERRAHKIL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+  V HV NFD+P   E Y+HR+GRTGRAG+ G A +LV  +D +    
Sbjct: 306 VTTDVASRGLDLTSVTHVINFDMPKHMEEYVHRVGRTGRAGKKGTAISLVGPKDWESFKR 365

Query: 360 IEKLIEKKV-----DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-- 412
           IE  +++ +     + L G    L P  ++  + + +  +        +    +++ N  
Sbjct: 366 IETFLQQDLAFSEFEDLKGKFKGLKPKHKREFVKKGDDKKTTAKRGSYTPKKSKKRDNTF 425

Query: 413 ----YSSQKSHIPLKESEKI 428
                  ++  +P K+ ++I
Sbjct: 426 HTNVAVGEQVFMPKKKPKQI 445


>gi|262403840|ref|ZP_06080398.1| cold-shock DEAD-box protein A [Vibrio sp. RC586]
 gi|262350344|gb|EEY99479.1| cold-shock DEAD-box protein A [Vibrio sp. RC586]
          Length = 643

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 148/463 (31%), Positives = 240/463 (51%), Gaps = 35/463 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N      L I  G     Q + L
Sbjct: 66  NKLNLSQHK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 123 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL+NP+ ++V   + T   +E  +         +        
Sbjct: 183 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLET 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 243 EET---DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE++    ++ +        P  +K+  ++                  +  +  ++ K  
Sbjct: 360 IERVTRSSMEEIQ------LPHRDKVAESR----------------LTKLGQELAADKEF 397

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
             L+   ++ +  Q   E DA +L       A +L + +GK  
Sbjct: 398 SSLERFAELVEKLQASLEIDATTLA------AILLKRQQGKRP 434


>gi|262174005|ref|ZP_06041682.1| cold-shock DEAD-box protein A [Vibrio mimicus MB-451]
 gi|261891363|gb|EEY37350.1| cold-shock DEAD-box protein A [Vibrio mimicus MB-451]
          Length = 643

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 148/463 (31%), Positives = 240/463 (51%), Gaps = 35/463 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N      L I  G     Q + L
Sbjct: 66  NKLNLSQHK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 123 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL+NP+ ++V   + T   +E  +         +        
Sbjct: 183 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLET 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 243 EET---DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE++    ++ +        P  +K+  ++                  +  +  ++ K  
Sbjct: 360 IERVTRSSMEEIQ------LPHRDKVAESR----------------LTKLGQELAADKEF 397

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
             L+   ++ +  Q   E DA +L       A +L + +GK  
Sbjct: 398 SSLERFAELVEKLQASLEIDATTLA------AILLKRQQGKRP 434


>gi|260365571|ref|ZP_05778108.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260877635|ref|ZP_05889990.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260895944|ref|ZP_05904440.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308085216|gb|EFO34911.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308090909|gb|EFO40604.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308114339|gb|EFO51879.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
          Length = 417

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 158/435 (36%), Positives = 252/435 (57%), Gaps = 22/435 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++FADLG+  ++V  + +   V PTP+Q K+IP VL+  D+   AQTGTGKTA+F LP++
Sbjct: 3   VNFADLGIEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPII 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++ + R   P  LIL PTRELA QV DN  +Y ++ +L +  + GG     Q  KLE
Sbjct: 63  QAVQQKK-RNGTPHALILVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGTSIGVQKNKLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+LI TPGR+LDH   G + ++   +LV+DEADRMLDMGF P +Q I   +P  +Q 
Sbjct: 122 EGADILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPNDKQI 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++ ++   + +P  +EV+  ++TAET+       Y    K+   L   L 
Sbjct: 182 MLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETV---KQMVYPVDKKRKRELLAYLI 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  ++F   K+    L   L+  G    +I+G+  Q +R + L  FK+G ++ ++
Sbjct: 239 GSRNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++   + AI
Sbjct: 299 ATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLRAI 358

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           E L+++++  +WL G   SL   +E                P++  G  R+ ++   +K 
Sbjct: 359 ETLLDQRLPQEWLEGFEPSLIEEVE----------------PERDGGGRRKSRSSEKRKL 402

Query: 419 HIPLKESEKISKLQQ 433
              L   +   K ++
Sbjct: 403 KAKLAIHKNRGKHRK 417


>gi|257790938|ref|YP_003181544.1| DEAD/DEAH box helicase domain-containing protein [Eggerthella lenta
           DSM 2243]
 gi|257474835|gb|ACV55155.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
          Length = 414

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 151/419 (36%), Positives = 232/419 (55%), Gaps = 18/419 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGLS   + AV   G+  PTP+Q + IPLVL+  DV   A TGTGKTA+F LP+  
Sbjct: 4   TFQDLGLSETTLSAVERMGFTAPTPVQEQAIPLVLEGRDVVAAATTGTGKTAAFALPLFE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + + + R   PR L++ PTREL  Q+     +  K  N  +  ++GG  ++ Q  KL+R
Sbjct: 64  RIGRAK-RPGSPRALVVSPTRELTQQIDAACTQLAKASNRRMLTVMGGTKYKGQIAKLDR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVL+ TPGR+ D   RG + + ++E+LV+DEADRMLDMGF P ++ + +  P +RQTL
Sbjct: 123 GIDVLVATPGRLYDLMERGVVKLRDVEVLVLDEADRMLDMGFWPTMKKVVAATPSSRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ +   + L++P  +     S   ET +            K   L +L+  
Sbjct: 183 LFSATLDRKVMQSVSSILKDPAFV---EVSHKGETADTIDQFMIPVGPMKKPALLRLVLQ 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   K  I+F + K         L++ GF   +IH +  Q  R + L  F +G I ++VA
Sbjct: 240 QRGSKRVIVFADTKTRAEICTGQLKRAGFRADSIHSDKTQVQRKRALEGFSKGAIDVLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+ ++ +V N+D+P   E+Y+HRIGRTGRAG  G A + V+ E    +  IE
Sbjct: 300 TDVLARGIDVSNIEYVVNYDLPESPEDYVHRIGRTGRAGETGYAISFVSPEAKAQLLDIE 359

Query: 362 KLIEKKVDWLNGD----------LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           KL+ +++  L+ D          L+S   P   +  A  + + + N     ++GF RR+
Sbjct: 360 KLLGERIPTLDIDGYDATEAEKALASQFVPKATVGSAAFSRSLRRN----GASGFGRRR 414


>gi|224373572|ref|YP_002607944.1| ATP-dependent RNA helicase DeaD [Nautilia profundicola AmH]
 gi|223588451|gb|ACM92187.1| ATP-dependent RNA helicase DeaD [Nautilia profundicola AmH]
          Length = 467

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 139/395 (35%), Positives = 216/395 (54%), Gaps = 15/395 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L  +++  + + G+ KP+PIQ K IP+VLQ  D+   AQTGTGKTA+F LP+L
Sbjct: 1   MTFNDFNLKKEILKRLEEIGFEKPSPIQEKAIPVVLQGKDIVAQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +LEKG+  +      I+ PTRELA QV++   ++GK+  +  A + GG  +  Q   ++
Sbjct: 61  NMLEKGQKAL------IITPTRELAIQVSEEIFRFGKHLGIHTATVYGGSSYSRQINHIK 114

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++      I         +    E +V+DEAD MLDMGF+  I+ I   VP  RQT
Sbjct: 115 NSEVIVATPGRLIDLL--SSGKIDIAPEYVVLDEADEMLDMGFLDDIKEIFKYVPSNRQT 172

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +  +++  L++P+ I++     T E I+  F            +      
Sbjct: 173 LLFSATMPKPILSLAKTILKDPEFIQITKKEVTNENIKEYFYVIDEHERNDALIRL---I 229

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+FC  KK+V  +   L   GF    +HG++DQR R +++  FK   I+++V
Sbjct: 230 DYKQPNKAIVFCRTKKDVDTVADFLSGVGFDAKGLHGDMDQRKREEVIKGFKGNRIEILV 289

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HVFN+ +P   E+Y+HRIGRTGRAG+ G A +LV   + + +  I
Sbjct: 290 ATDVAARGLDVNDVTHVFNYHLPLDPESYVHRIGRTGRAGKEGMAISLVTPHEFRALSKI 349

Query: 361 EKLIEKKVDWLNG----DLSSLNPPLEKIDIAQHN 391
           +K+ + ++  +        + +   +EKI   + N
Sbjct: 350 QKISKIELKEVPTLQDVKNTEIQKIMEKISSIEPN 384


>gi|254515124|ref|ZP_05127185.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium NOR5-3]
 gi|219677367|gb|EED33732.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium NOR5-3]
          Length = 444

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 165/390 (42%), Positives = 237/390 (60%), Gaps = 7/390 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGLS +++ AV   GY + TPIQ K IPLVLQ HD+   AQTGTGKTA F LP+L
Sbjct: 1   MLFKDLGLSAELLRAVEKQGYDEATPIQQKAIPLVLQGHDLLAGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L+     V+   P+ L+L PTRELAAQV ++   YG+      A++ GG+    Q +K
Sbjct: 61  QRLQSKYQDVQKSFPKVLVLTPTRELAAQVHESVRDYGRYLPFRSAVIFGGVSINPQKQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+++ TPGR+LDH  +  + ++ IEILV+DEADRMLDMGFI  I+ +  ++P  R
Sbjct: 121 LIKGVDIVVATPGRLLDHVQQRSIDLSRIEILVLDEADRMLDMGFIHDIRRVMKVIPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT + E++K++  FL+ P++I+V   ++    +            ++       
Sbjct: 181 QTLLFSATFSSEIKKLASEFLEQPEQIQVTPQNTATTLVSQLVYPVDKNRKREL---LSQ 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  +IF   K     L   L+K G S  AIHGN  Q +R + L +FK GTI+ 
Sbjct: 238 QIGEGNWQQVLIFTRTKHGANKLAEQLDKDGISAAAIHGNKSQGARTRALGDFKAGTIRA 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV NF++PN  E+YIHRIGRT RAG+ G A +LV  +++K + 
Sbjct: 298 LVATDIAARGIDIDKLPHVVNFELPNVPEDYIHRIGRTARAGQQGHAISLVCVDELKLLR 357

Query: 359 AIEKLIEKKVD--WLNGDLSSLNPPLEKID 386
            IEKL+ K ++  +L G     +   E I 
Sbjct: 358 DIEKLLGKDIEKVYLPGFEVDPSIKAEPIQ 387


>gi|195330738|ref|XP_002032060.1| GM23722 [Drosophila sechellia]
 gi|194121003|gb|EDW43046.1| GM23722 [Drosophila sechellia]
          Length = 399

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L 
Sbjct: 27  TFNAMNLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQ 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+      ++     L PTRELA Q+       G   N+   + IGG       +KL+ 
Sbjct: 87  SLDTTLRETQILC---LSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDY 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 144 GQHIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 204 LISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 261

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R +I+  F+ G  ++++ 
Sbjct: 262 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLIT 321

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 322 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIE 381

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 382 QYYSTQIDEMPMNVADL 398


>gi|170698992|ref|ZP_02890050.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170136099|gb|EDT04369.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 472

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 160/400 (40%), Positives = 233/400 (58%), Gaps = 9/400 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + ++N++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAE++            ++     
Sbjct: 181 QRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHAR 394
           +  IE+LI++++  + + G     +   E I   +    R
Sbjct: 358 LRDIERLIKREIPQEVIAGFEPDPSAKPEPIQQRRGQQPR 397


>gi|172061636|ref|YP_001809288.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171994153|gb|ACB65072.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 479

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 160/400 (40%), Positives = 233/400 (58%), Gaps = 9/400 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + ++N++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAE++            ++     
Sbjct: 181 QRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHAR 394
           +  IE+LI++++  + + G     +   E I   +    R
Sbjct: 358 LRDIERLIKREIPQEVIAGFEPDPSAKPEPIQQRRGQQPR 397


>gi|28900700|ref|NP_800355.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28809080|dbj|BAC62188.1| ATP-dependent RNA helicase, DEAD box family [Vibrio
           parahaemolyticus RIMD 2210633]
          Length = 421

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 158/435 (36%), Positives = 252/435 (57%), Gaps = 22/435 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++FADLG+  ++V  + +   V PTP+Q K+IP VL+  D+   AQTGTGKTA+F LP++
Sbjct: 7   VNFADLGIEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPII 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++ + R   P  LIL PTRELA QV DN  +Y ++ +L +  + GG     Q  KLE
Sbjct: 67  QAVQQKK-RNGTPHALILVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGTSIGVQKNKLE 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+LI TPGR+LDH   G + ++   +LV+DEADRMLDMGF P +Q I   +P  +Q 
Sbjct: 126 EGADILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPNDKQI 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++ ++   + +P  +EV+  ++TAET+       Y    K+   L   L 
Sbjct: 186 MLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETV---KQMVYPVDKKRKRELLAYLI 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  ++F   K+    L   L+  G    +I+G+  Q +R + L  FK+G ++ ++
Sbjct: 243 GSRNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALI 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++   + AI
Sbjct: 303 ATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLRAI 362

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           E L+++++  +WL G   SL   +E                P++  G  R+ ++   +K 
Sbjct: 363 ETLLDQRLPQEWLEGFEPSLIEEVE----------------PERDGGGRRKSRSSEKRKL 406

Query: 419 HIPLKESEKISKLQQ 433
              L   +   K ++
Sbjct: 407 KAKLAIHKNRGKHRK 421


>gi|115352774|ref|YP_774613.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115282762|gb|ABI88279.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
          Length = 480

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 160/400 (40%), Positives = 233/400 (58%), Gaps = 9/400 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + ++N++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAE++            ++     
Sbjct: 181 QRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHAR 394
           +  IE+LI++++  + + G     +   E I   +    R
Sbjct: 358 LRDIERLIKREIPQEVIAGFEPDPSAKPEPIQQRRGQQPR 397


>gi|307308978|ref|ZP_07588661.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
 gi|306900612|gb|EFN31225.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 504

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 162/460 (35%), Positives = 248/460 (53%), Gaps = 4/460 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  +V  +   G+ KPTPIQ + IPLVL+ HD+ G+AQTGTGKTA+F LPM+ 
Sbjct: 3   TFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIE 62

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L     R   R  R L+L PTREL  Q+A N + + K   L + L++GG+    Q ++L
Sbjct: 63  KLVADGRRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD  +R  + +     LV+DEAD+MLD+GFI  ++ I+ LVP  RQ
Sbjct: 123 ARGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKNRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + +++  +L +P ++EV+ P   A+ +E        +  K      +  
Sbjct: 183 TLLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTI--LKQT 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +     +IF   K     L   L+  GF   +IHGN  Q  R + L  F++G I+++
Sbjct: 241 LTANPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V HV+N+D+P   + Y+HRIGRT R GR G A    A ++I+ +  
Sbjct: 301 VATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRD 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IEKL+  ++   +G+  +      K    + N   + N   + +    R+      +   
Sbjct: 361 IEKLMGIQIAVASGEAPADQARPSKGRGGRGNGQPRGNGQSRGNGAGQRQGGPRRDRPQR 420

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRG 459
                      L +D + ++       G+ PA   P+   
Sbjct: 421 QAAAGGFAGDDLLRDERSHERRDQRAAGHGPADGRPEGHR 460


>gi|308068476|ref|YP_003870081.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus polymyxa
           E681]
 gi|305857755|gb|ADM69543.1| Probable RNA helicase exp9 (Exported protein 9) [Paenibacillus
           polymyxa E681]
          Length = 529

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 148/382 (38%), Positives = 232/382 (60%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+  L PKV+ A+ + G+ + TPIQ ++IP+ LQ  D+ G AQTGTGKTA+F +P++ 
Sbjct: 3   TFAEFDLEPKVIQAITELGFEEATPIQSQSIPIALQGRDMIGQAQTGTGKTAAFGIPLIN 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + +   ++R    LI+ PTRELA QVA+  EK  +   L    + GG     Q + L++
Sbjct: 63  KISRSDEKIRA---LIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH NR  + + ++  +V+DEAD MLDMGF+  IQ+I   VP  RQT+
Sbjct: 120 KPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQTM 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +++++E FL+NP+ + V     +A  I     A      ++       L  
Sbjct: 180 LFSATMPANIKRLAEQFLKNPEHVSVIPKQVSAPLI---DQAYIEVPERQKFEALSRLID 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            ++ +  I+F   K+ V  L  +L+K+G+S   +HG++ Q  R  ++  F++G+I ++VA
Sbjct: 237 MESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HV NFD+P   E+Y+HRIGRTGRAG+ G+A++ V   +I H+  IE
Sbjct: 297 TDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHFIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           ++   ++      L +L   LE
Sbjct: 357 RVTRHRIPRKP--LPTLAEALE 376


>gi|283769405|ref|ZP_06342304.1| putative ATP-dependent RNA helicase RhlE [Bulleidia extructa W1219]
 gi|283104062|gb|EFC05446.1| putative ATP-dependent RNA helicase RhlE [Bulleidia extructa W1219]
          Length = 425

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 163/434 (37%), Positives = 249/434 (57%), Gaps = 9/434 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   ++ ++  A Y KP+PIQ K IP++L+  D+   AQTGTGKTA+F LP+L
Sbjct: 1   MTFNEFNLRKPLLDSLAKASYKKPSPIQEKGIPILLEGSDLIACAQTGTGKTATFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   + +    R LIL PTRELA Q+ +N + +G+  +L    + GG P   Q K + 
Sbjct: 61  NSL--SKEKNHSIRALILTPTRELATQIFENIKMFGRYMHLRACCVYGGSPAAPQLKAIR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+LI TPGR+LD+   GK+ + +IE LV+DEADRMLDMGFI  ++ I   +P  R T
Sbjct: 119 SGCDILIATPGRLLDYLAHGKISLRHIEFLVLDEADRMLDMGFIADVRKIVQQIPNDRIT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+Q+++ + L+NPK + +     TA TI+   + T     KK  +      
Sbjct: 179 ALFSATMPKEIQELARDILKNPKEVRIEAEKFTASTIDQYLIYTEKSSKKKVLVNLL--- 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +++K  I+F   K     L   L+++  +   IHG+  Q  R+  L  F+   I++++
Sbjct: 236 NTESIKKTIVFTRTKIGADRLEKYLKEKEIACLVIHGDKTQGQRLNALQRFRTNQIRILI 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV NFD+P   ENY+HRIGRTGRA + G + +LV KE++  +  I
Sbjct: 296 ATDVAARGIDIKDISHVINFDLPEDIENYVHRIGRTGRAKQEGVSISLVCKEELNLLANI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  I+ ++  L  +L SL  PLE+    + +  +      ++ +   +R K  S  +  I
Sbjct: 356 ESYIQFQIP-LKQNLYSL--PLERKKKRKSSIHKTTRK-KERFSNQKKRSKKKSFHEGLI 411

Query: 421 PLKESEKISKLQQD 434
           P K     SK ++ 
Sbjct: 412 PQKGISPKSKQKRK 425


>gi|301112965|ref|XP_002998253.1| eukaryotic initiation factor 4A-III, putative [Phytophthora
           infestans T30-4]
 gi|262112547|gb|EEY70599.1| eukaryotic initiation factor 4A-III, putative [Phytophthora
           infestans T30-4]
          Length = 406

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 197/377 (52%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I   +Q  D+   +Q+GTGKTA F + +L 
Sbjct: 34  TFEAMGLKEDLLRGIYSYGFEKPSAIQQRAIKPAIQGRDLIAQSQSGTGKTAVFSISILQ 93

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+      +    L++ PTRELA Q        G   N+     IGG       ++L+ 
Sbjct: 94  SLDTSSNETQA---LVVSPTRELAEQTQKVVLALGDFMNVQCHACIGGKSVGEDIRRLDF 150

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGRI D   R  L   NI++LVIDEAD ML+ GF   I +I   +P + Q L
Sbjct: 151 GVQVVSGTPGRIFDMIRRRNLRTRNIKMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVL 210

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+  ++  F+  P ++ V     T E I+  FVA   +  K   L       
Sbjct: 211 LVSATMPQEVLDLTRKFMNEPVKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL--YD 268

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V A+HG++ Q+ R  I+  F+ G  ++++ 
Sbjct: 269 TLTITQAVIFCNTKRKVDWLTSKMREANFTVSAMHGDMPQKERDAIMQEFRSGGSRVLIT 328

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+  RGLD+  V  V  +D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 329 TDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKDDDIRILRDIE 388

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 389 QYYSTQIDEMPMNVADL 405


>gi|71024093|ref|XP_762276.1| hypothetical protein UM06129.1 [Ustilago maydis 521]
 gi|74699014|sp|Q4P184|FAL1_USTMA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|46101778|gb|EAK87011.1| hypothetical protein UM06129.1 [Ustilago maydis 521]
          Length = 397

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +    + KP+ IQ + I  +++  DV   AQ+GTGKTA+F + ML 
Sbjct: 25  TFDAMGLKEDLLRGIYAYNFEKPSAIQQRAILPIIRGRDVIAQAQSGTGKTATFSISMLQ 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++      +    L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 85  SIDTTLRETQA---LVLSPTRELAIQIQSVVLALGDYLNVQCHACIGGTSVGEDIRKLDY 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L   NI++L++DE+D +L+MGF   I ++   +P + Q +
Sbjct: 142 GQHIVSGTPGRVYDMIRRRHLRTKNIKMLILDESDELLNMGFKDQIYDVYRYLPPSTQVV 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  ++ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 202 LLSATLPQDVLEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL--YD 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   +++  F V ++HG + Q+ R ++++ F++G+ ++++ 
Sbjct: 260 TLTITQAVIFCNTRRKVDWLSAKMKENNFQVSSMHGEMQQKERDEVMAEFRQGSSRVLIT 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+DI ++  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  IE
Sbjct: 320 TDVWARGIDIANISLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTVDDVRTLRDIE 379

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +   L  +
Sbjct: 380 QFYSTQIDEMPVKLEDM 396


>gi|153809380|ref|ZP_01962048.1| hypothetical protein BACCAC_03694 [Bacteroides caccae ATCC 43185]
 gi|149127966|gb|EDM19188.1| hypothetical protein BACCAC_03694 [Bacteroides caccae ATCC 43185]
          Length = 375

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 150/375 (40%), Positives = 226/375 (60%), Gaps = 6/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L ++  ++ A+ + GY  PTPIQ K IP  L + D+ G AQTGTGKTASF +P++
Sbjct: 1   MTFKELNITEPILKAIKEKGYTVPTPIQEKAIPAALAKRDILGCAQTGTGKTASFAIPII 60

Query: 61  TILE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L+   K   + +  + LIL PTRELA Q+++  + Y K   +   ++ GG+    Q  
Sbjct: 61  QHLQVVSKESVKRQGIKALILTPTRELALQISECIDDYSKYTRVRHGVIFGGVNQRPQVD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +G D+L+ TPGR+LD  N+G + ++ I+  V+DEADRMLDMGFI  I+ I   +P  
Sbjct: 121 MLRKGIDILVATPGRLLDLMNQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTL FSATM D +  ++++ L+NP +I +   SST ++I       Y    K+ + L  
Sbjct: 181 KQTLFFSATMPDTIVTLTKSLLKNPVKIYITPKSSTVDSI---NQVVYFVEKKEKSQLLI 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   ++ +IF   K N   +   L K G    AIHGN  Q +R   L NFK G  +
Sbjct: 238 SILQKAEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MVA+D+A+RG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A T  ++E+ K +
Sbjct: 298 VMVATDIASRGIDISELPMVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQEERKLV 357

Query: 358 DAIEKLIEKKVDWLN 372
           + I+KL  KK++  N
Sbjct: 358 NDIQKLTGKKLNKAN 372


>gi|253996647|ref|YP_003048711.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera
           mobilis JLW8]
 gi|253983326|gb|ACT48184.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8]
          Length = 576

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 144/370 (38%), Positives = 223/370 (60%), Gaps = 3/370 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F  L L+P ++ A+ + GY  PTPIQ + IP+V++ HD+   AQTGTGKTA F+LP +
Sbjct: 1   MSFESLNLNPAILRAIEETGYTTPTPIQAQAIPVVMEGHDLMASAQTGTGKTAGFMLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +     +R R PR L+L PTRELAAQV +   KYGK        ++GG+P+  QNK L
Sbjct: 61  NLLATPHESRSRGPRILVLTPTRELAAQVNEAARKYGKFLRARTVSIVGGMPYPLQNKLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+L+ TPGR+LDH  RG++ ++ +++L++DEADRMLDMGF+P ++ I   +   RQ
Sbjct: 121 SQPLDILVATPGRLLDHMERGRIDLSRLQMLILDEADRMLDMGFLPDVERICEQLSAERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT+  ++ ++++  L+NPK ++V         IE           K    L + L
Sbjct: 181 TLLFSATLDGDIARIAQQILKNPKTVQVAAQKEKHANIEQRLHFVDDMTHK--NKLLEHL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   IIF + K++   L   L   G    A+HG++ Q +R + L+  + G ++++
Sbjct: 239 LIAPEVNQTIIFTSTKRHADVLAEDLYAAGHKTAALHGDMTQGARNRTLTKLRHGDVKVL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HV N+D+P  AE+Y+HRIGRTGRA   G A +  +  D   +  
Sbjct: 299 VATDVAARGIDVHGITHVINYDLPKFAEDYVHRIGRTGRANNTGIAISFASNMDRHLLRK 358

Query: 360 IEKLIEKKVD 369
           IE+    +++
Sbjct: 359 IEQYTGNRLE 368


>gi|154492527|ref|ZP_02032153.1| hypothetical protein PARMER_02161 [Parabacteroides merdae ATCC
           43184]
 gi|154087752|gb|EDN86797.1| hypothetical protein PARMER_02161 [Parabacteroides merdae ATCC
           43184]
          Length = 419

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 160/418 (38%), Positives = 241/418 (57%), Gaps = 9/418 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L   +  A+    Y  PTPIQ + IP+VL   D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFEQLELIEPIRKALKKEKYTTPTPIQAEAIPVVLDGSDLLGCAQTGTGKTAAFSIPII 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +E+  +R R P     IL PTRELA Q+ ++F  YG+  ++   ++ GG+  + Q   
Sbjct: 61  QKIEERISRGRKPGIKALILTPTRELAIQIGESFTAYGRYTHVKHTVIFGGVGQKPQTDA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG DVLI TPGR+LD  N+G + ++ +E  V+DEADRMLDMGFI  I+ I  L+P  R
Sbjct: 121 LERGVDVLIATPGRLLDLINQGFIRLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+++++   L  P+++EV   SST +TI+                  + 
Sbjct: 181 QSLFFSATMPPEIERLAGTILHEPEKVEVTPVSSTVDTIDQSVYFVEKVEKINL---LKN 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L    ++++ ++F   K     +   L K G    AIHGN  Q +R + LS+FK+ T+++
Sbjct: 238 LLEDRSLESVLVFTRTKHGADKVARVLNKSGIGAEAIHGNKGQSARQRALSSFKDHTLRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RG+D+  + HV N+D+PN  E Y+HRIGRTGRAGR G AF+    E++ ++ 
Sbjct: 298 LIATDIASRGIDVDHLSHVINYDLPNVPETYVHRIGRTGRAGRSGIAFSFCDVEEVPYLK 357

Query: 359 AIEKLIEKKVD----WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            I+KLI K+V      +   +       EK    +    R+N    ++   F R KK 
Sbjct: 358 DIQKLIGKEVPVAGGHMFETVEVKEAVAEKKKAIKEESKRRNMFGSKRDGSFWRNKKR 415


>gi|313619814|gb|EFR91407.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
           S4-378]
          Length = 518

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 151/372 (40%), Positives = 224/372 (60%), Gaps = 6/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++ GL  K+V +V   G+ + TPIQ KTIPL L   D+ G AQTGTGKTA+F LPM+ 
Sbjct: 5   KFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIH 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++    V+    LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++
Sbjct: 65  KIDQKNNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L ++++E LV+DEAD ML+MGFI  I+ I   VP  RQTL
Sbjct: 122 NPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++++ E F+ +P+ I +     TA  I          + K+   +   L  
Sbjct: 182 LFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLI---EQFFVKVHEKEKFDVLSRLLD 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA
Sbjct: 239 VQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E
Sbjct: 299 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVE 358

Query: 362 KLIEKKVDWLNG 373
           +  +K++  L  
Sbjct: 359 ETTKKRMQPLQA 370


>gi|262164855|ref|ZP_06032593.1| cold-shock DEAD-box protein A [Vibrio mimicus VM223]
 gi|262027235|gb|EEY45902.1| cold-shock DEAD-box protein A [Vibrio mimicus VM223]
          Length = 643

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 135/373 (36%), Positives = 211/373 (56%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N      L I  G     Q + L
Sbjct: 66  NKLNLSQHK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 123 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL+NP+ ++V   + T   +E  +         +        
Sbjct: 183 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLET 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 243 EET---DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVDWLN 372
           IE++    ++ + 
Sbjct: 360 IERVTRSSMEEIQ 372


>gi|258624003|ref|ZP_05718956.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM603]
 gi|258583797|gb|EEW08593.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM603]
          Length = 663

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 135/373 (36%), Positives = 211/373 (56%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 26  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N      L I  G     Q + L
Sbjct: 86  NKLNLSQHK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 142

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 143 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 202

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL+NP+ ++V   + T   +E  +         +        
Sbjct: 203 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLET 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 263 EET---DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 320 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 379

Query: 360 IEKLIEKKVDWLN 372
           IE++    ++ + 
Sbjct: 380 IERVTRSSMEEIQ 392


>gi|326430178|gb|EGD75748.1| eIF-4a [Salpingoeca sp. ATCC 50818]
          Length = 409

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+GL  +++  +   G+ +P+ IQ + I    +  DV   AQ+GTGKTA+F + +L 
Sbjct: 37  NFDDMGLKAELLRGIYSYGFERPSAIQQRAIVPCTKGRDVIAQAQSGTGKTATFSVSVLQ 96

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  R      + LIL PTRELA Q  D  E  G+  ++     IGG   +    KLE+
Sbjct: 97  RIDTTRPE---CQALILAPTRELATQSLDVLENLGQYMDVKTMGCIGGTRVQDDMAKLEQ 153

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+    N G L ++N+ + V+DEAD ML  GF   I +I   +P   Q +
Sbjct: 154 GVQVIVGTPGRVFHMINSGALDVSNLGVFVLDEADEMLSFGFTDQIYDIFQTLPKDVQVI 213

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM D++ +V++ F+++P RI V     T E I   +V    +  K        +  
Sbjct: 214 LISATMPDDVLEVTKRFMRDPIRILVKKEQLTLEGIRQFYVDVGKEDWKLET--LSDIWK 271

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  +G  V   HG++ Q  R  I+  F+ G+ ++++ 
Sbjct: 272 TITISQAVIFCNTRRKVDWLTEQLRARGHQVSCTHGDMTQDERNMIMKEFRAGSTRVLIT 331

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P+  ENY+HRIGR+GR GR G A   VA++D++ +  +E
Sbjct: 332 TDLLARGIDVQQVSLVINFDLPSNRENYLHRIGRSGRFGRKGVAINFVAEDDVRRLKELE 391

Query: 362 KLIEKKVDWLNGDLSSL 378
           +  + ++D +  +++  
Sbjct: 392 EFYQTQIDEMPKNVADF 408


>gi|325977801|ref|YP_004287517.1| DEAD-box ATP-dependent RNA helicase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325177729|emb|CBZ47773.1| DEAD-box ATP-dependent RNA helicase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 526

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 154/373 (41%), Positives = 231/373 (61%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ AV  AG+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R  V+    L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L 
Sbjct: 61  DKIDTNRNLVQ---ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L ++++E L++DEAD ML+MGF+  I+ I S VP TRQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + ++++   F+QNP+ ++V     T + ++  ++    Q             
Sbjct: 178 LLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +G+    IHG++DQ  R+++L +FK   I ++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+HG++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYLSII 354

Query: 361 EKLIEKKVDWLNG 373
           EKL +K++  L  
Sbjct: 355 EKLTKKRMKGLKP 367


>gi|294776591|ref|ZP_06742061.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
 gi|294449579|gb|EFG18109.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
          Length = 425

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 133/421 (31%), Positives = 224/421 (53%), Gaps = 15/421 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L   V+ A+    + + TP+Q  TIP++L+  D+ G+AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELNLEEGVLQALDAMRFEECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L KG         +I+ PTRELA Q+    E +      +   + GG       ++ +
Sbjct: 61  NQLSKGGYPEDAINCVIMSPTRELAQQIDQQMEGFSYFLPASSVAVYGGNDGVRFEQEKK 120

Query: 121 RGA---DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 DV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q++++  L NP  I++       +         Y  Y ++   + Q
Sbjct: 181 RQTIMFSATMPAKIQQLAKTILNNPVEIKLAVSKPAEKI----IQTAYICYERQKLGIIQ 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    T +  IIF + K  V  +  + ++   +V  +H +++Q  R +I+  FK G I 
Sbjct: 237 SLFQDQTPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+ +RG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V++++    
Sbjct: 297 ILIATDIVSRGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANHDGCAITFVSEKEQPQF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            AIE  + + +  +        P  E++  A   + R             R++ NY  +K
Sbjct: 357 KAIENFLGRNIYKI--------PVPEELGEAPEYNPRSGAGRSNHKGSGSRKQGNYKGKK 408

Query: 418 S 418
           +
Sbjct: 409 N 409


>gi|288904866|ref|YP_003430088.1| ATP-dependent RNA helicase [Streptococcus gallolyticus UCN34]
 gi|288731592|emb|CBI13147.1| putative ATP-dependent RNA helicase [Streptococcus gallolyticus
           UCN34]
          Length = 526

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 154/373 (41%), Positives = 231/373 (61%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ AV  AG+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R  V+    L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L 
Sbjct: 61  DKIDTNRNLVQ---ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L ++++E L++DEAD ML+MGF+  I+ I S VP TRQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + ++++   F+QNP+ ++V     T + ++  ++    Q             
Sbjct: 178 LLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +G+    IHG++DQ  R+++L +FK   I ++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+HG++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYLSII 354

Query: 361 EKLIEKKVDWLNG 373
           EKL +K++  L  
Sbjct: 355 EKLTKKRMKGLKP 367


>gi|317132682|ref|YP_004091996.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315470661|gb|ADU27265.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 435

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 153/408 (37%), Positives = 238/408 (58%), Gaps = 7/408 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L+P ++ A+  AGY +PTPIQ ++IP +L++ D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MQFSQLQLNPSILKALAAAGYEQPTPIQEQSIPYILEKRDLLGTAQTGTGKTAAFAVPIL 60

Query: 61  TILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L +   +    R  R L+L PTRELA Q+ ++F++Y +  +L   ++ GG+    Q  
Sbjct: 61  DLLCREHGQSTGSRHIRALVLSPTRELAIQIKESFDQYSRFLHLRNTVIFGGVSQIPQVS 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G D+L+ TPGR+LD  N+  + ++++   V+DEADRMLDMGFI  +  +   +P  
Sbjct: 121 RLREGVDILVATPGRLLDLMNQRHVDLSHVSYFVLDEADRMLDMGFIHDVHKVVEKLPQN 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM  ++ ++++  L+NP ++ V   SSTAET+E        +  K   +   
Sbjct: 181 RQTLLFSATMPPDIARLADKLLKNPAQVSVAPVSSTAETVEQKLFYVDKKNKKHLLVHLL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                   ++ ++F   K     +   LEK G    AIHGN  Q +R + L  FK   I 
Sbjct: 241 KTADM---ESVLVFSRTKHGANKIVEHLEKAGIPSKAIHGNKSQSARQQALREFKSRKIH 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HV N+D+PN  E Y+HRIGRTGRAG+ G AF+   +E+  ++
Sbjct: 298 VLVATDIAARGIDVTELSHVINYDLPNEPETYVHRIGRTGRAGQSGMAFSFCDEEEHDYL 357

Query: 358 DAIEKLIEKKVDWLNG-DLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
             IE+LI K +   N     +   P        H   R+  P   ++ 
Sbjct: 358 RTIERLIGKHIPVENDHPYPATMAPTAPPKQGGHGGGRRPAPRNPRTG 405


>gi|156389356|ref|XP_001634957.1| predicted protein [Nematostella vectensis]
 gi|156222046|gb|EDO42894.1| predicted protein [Nematostella vectensis]
          Length = 794

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 139/448 (31%), Positives = 233/448 (52%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+  K++  +    Y KPTPIQ + IP+++   D+ GIA+TG+GKT +F++PM  
Sbjct: 138 TWAQTGVQLKILDVLKKNSYEKPTPIQAQAIPVIMSGRDMIGIAKTGSGKTLAFLIPMFR 197

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++      R   P  +++ PTRELA Q+    +K+ K  NL    + GG     Q  +L
Sbjct: 198 HIKDQPPLEREEGPIAIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYGGTGISEQIAEL 257

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     N           LV+DEADRM DMGF P +  I   +  
Sbjct: 258 KRGAEIIVCTPGRMIDMLTANNGRVTNCQRCTYLVLDEADRMFDMGFEPQVMRIIDCIRP 317

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   L  P  I+V   S     +E        +   K   L 
Sbjct: 318 DRQTVMFSATFPRQMEALARKILDKPIEIQVGGRSVVCSDVEQNV--VVIEEDDKFLKLL 375

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + ++F  ++ +  +L   L K+ +   ++HG +DQ  R   +++FK G  
Sbjct: 376 ELLGLYQEQGSVLVFVEKQDSADSLFKDLLKRSYPCLSLHGGMDQFDRDSTIADFKNGVT 435

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +LM+A+ +AARGLD+  +  V N+D PN  E+Y+HR+GRTGRAG  G A+T +  E  + 
Sbjct: 436 KLMIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRVGRTGRAGNKGTAYTFLTPEQGRF 495

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              + K +E   + +  D+ +L     +   A+  +  KN+    K   F+  +K     
Sbjct: 496 AIDVIKALEMAENPVPEDVRNLANTYIETRKAEGKNIVKNSGFSGKGFKFNDEEK----- 550

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
                + E++KI K    +Q++D ++  
Sbjct: 551 ---AKVSEAKKIQKWALGLQDSDDEAEA 575


>gi|153955940|ref|YP_001396705.1| RNA helicase [Clostridium kluyveri DSM 555]
 gi|219856282|ref|YP_002473404.1| hypothetical protein CKR_2939 [Clostridium kluyveri NBRC 12016]
 gi|146348798|gb|EDK35334.1| Predicted RNA helicase [Clostridium kluyveri DSM 555]
 gi|219570006|dbj|BAH07990.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 524

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 150/383 (39%), Positives = 228/383 (59%), Gaps = 7/383 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL L PKV  A+ + G+ +P+ IQ ++IP++L+ +D+ G AQTGTGKT +F  PML
Sbjct: 4   ISFNDLNLHPKVFEAIDNMGFEEPSQIQAESIPVILEGNDIIGQAQTGTGKTLAFGAPML 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + +     + +    LIL PTRELA QV D   +  K   + +  + GG P E Q K L+
Sbjct: 64  SKI---TPKNKHISALILTPTRELAIQVNDELSRIAKFMKILLLPIYGGQPIERQIKSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++++ TPGRILDH +R  L ++NIE L IDEAD MLDMGFI  I+ I       RQT
Sbjct: 121 RGINIVVGTPGRILDHLHRKTLDLSNIEFLTIDEADEMLDMGFIEDIEEIIKASNPNRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D++++++  ++ +  +    T +    T+E      Y    K        + 
Sbjct: 181 LLFSATMPDQVKRLASKYMSSNTKYI--TIAKNTLTVEKTKQYYYEIKHKDRFESLCRIL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D   + IIFC  K+ V  L  S++ +G++V  +HG++ Q  R+  L  FKEG++  +V
Sbjct: 239 DVDEPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLDFLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ +V HV N+D+P   E+Y+HRIGRTGRA + G A++LV   +   +  I
Sbjct: 299 ATDVAARGIDVENVSHVINYDLPQDTESYVHRIGRTGRANKEGIAYSLVTPREYILLKQI 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           EK  + K+     D+ +++   E
Sbjct: 359 EKFTKSKIKR--KDIPTIDEIFE 379


>gi|153839935|ref|ZP_01992602.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|260901625|ref|ZP_05910020.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|149746542|gb|EDM57530.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|308108886|gb|EFO46426.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|328470634|gb|EGF41545.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus 10329]
          Length = 417

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 158/435 (36%), Positives = 252/435 (57%), Gaps = 22/435 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++FADLG+  ++V  + +   V PTP+Q K+IP VL+  D+   AQTGTGKTA+F LP++
Sbjct: 3   VNFADLGIEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPII 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++ + R   P  LIL PTRELA QV DN  +Y ++ +L +  + GG     Q  KLE
Sbjct: 63  QAVQQKK-RNGTPHALILVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGTSIGVQKNKLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+LI TPGR+LDH   G + ++   +LV+DEADRMLDMGF P +Q I   +P  +Q 
Sbjct: 122 EGADILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPNDKQI 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++ ++   + +P  +EV+  ++TAET+       Y    K+   L   L 
Sbjct: 182 MLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETV---KQMVYPVDKKRKRELLAYLI 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  ++F   K+    L   L+  G    +I+G+  Q +R + L  FK+G ++ ++
Sbjct: 239 GSRNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++   + AI
Sbjct: 299 ATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSQDEEYLLRAI 358

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           E L+++++  +WL G   SL   +E                P++  G  R+ ++   +K 
Sbjct: 359 ETLLDQRLPQEWLEGFEPSLIEEVE----------------PERDGGGRRKSRSSEKRKL 402

Query: 419 HIPLKESEKISKLQQ 433
              L   +   K ++
Sbjct: 403 KAKLAIHKNRGKHRK 417


>gi|15677233|ref|NP_274386.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
 gi|7226614|gb|AAF41742.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
 gi|308389485|gb|ADO31805.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha710]
 gi|316984178|gb|EFV63156.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           H44/76]
 gi|325130443|gb|EGC53205.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           OX99.30304]
 gi|325136474|gb|EGC59080.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M0579]
 gi|325140412|gb|EGC62933.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           CU385]
 gi|325200011|gb|ADY95466.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           H44/76]
 gi|325201923|gb|ADY97377.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240149]
 gi|325208326|gb|ADZ03778.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           NZ-05/33]
          Length = 462

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 158/453 (34%), Positives = 235/453 (51%), Gaps = 10/453 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QKLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    ++P+ IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK I +K+  L  +      P  K   A      K     +KS G+    K       
Sbjct: 360 KIEKYINRKLPELTIE---GMEPTRKRKSAGGKPKGKGGWGDRKSGGWRGDHKPSKEGFG 416

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
                E  K    ++D  +   +  GF+G   A
Sbjct: 417 GKTRGEGFKKEGFKRDGFKKTGE--GFKGKRKA 447


>gi|24645031|ref|NP_649788.2| eIF4AIII [Drosophila melanogaster]
 gi|7299019|gb|AAF54221.1| eIF4AIII [Drosophila melanogaster]
          Length = 399

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L 
Sbjct: 27  TFNAMNLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQ 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+      ++     L PTRELA Q+       G   N+   + IGG       +KL+ 
Sbjct: 87  SLDTTLRETQVLC---LSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDY 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 144 GQHIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 204 LISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 261

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R +I+  F+ G  ++++ 
Sbjct: 262 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLIT 321

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 322 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIE 381

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 382 QYYSTQIDEMPMNVADL 398


>gi|126174213|ref|YP_001050362.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125997418|gb|ABN61493.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 467

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 161/455 (35%), Positives = 251/455 (55%), Gaps = 14/455 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F+ LGLS  ++ A+ + GY +PTPIQ K IP++L+  ++   AQTGTGKTASFVLP+ 
Sbjct: 1   MPFSKLGLSDPILRAITELGYSQPTPIQEKAIPVILKGKNLLAGAQTGTGKTASFVLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +  + R +  R LIL PTRELA QV DN  KY K   LT   + GG+    Q ++L
Sbjct: 61  QMFADMPKIRAKRVRALILTPTRELAVQVEDNISKYAKYLPLTSMAMYGGVDAAPQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + I +LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDEISVLVLDEADRMLDMGFIEDINKIIERLPTERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++ +++  ++NP  IE+   S+ A  I+   +                 
Sbjct: 181 NLLFSATLSKQVRFLAKTAVENPVEIEIARDSANAPQIDQWLITVDKDKKSALLSKL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  +IF   K+    L   LEK+G +  AIH    Q  R ++L +FK G ++ +
Sbjct: 238 ITEQAWEQALIFIQTKQGAAKLVSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGRLRFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +A+RG+DI  +  V N+D+P+ A++YIHRIGRTGRAG  G+A + V+K+D +++ A
Sbjct: 298 VATGVASRGIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGACGEAISFVSKDDFRNLCA 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE+ +   +    + G + +   P+  +D    N   K            R  K  S + 
Sbjct: 358 IERRLGHIIVRKEIEGFVPNKEVPVSILDFVPKNTTPKTFKARAPEARTSRPAKEGSFET 417

Query: 418 SHIPLKESEK--------ISKLQQDIQENDADSLG 444
           +H     S K        +++ Q    +N +++ G
Sbjct: 418 AHAKKHRSAKSKPEAKATVARPQSAQTDNSSETTG 452


>gi|84684138|ref|ZP_01012040.1| hypothetical protein 1099457000262_RB2654_16856 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667891|gb|EAQ14359.1| hypothetical protein RB2654_16856 [Rhodobacterales bacterium
           HTCC2654]
          Length = 439

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 155/385 (40%), Positives = 230/385 (59%), Gaps = 5/385 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL PK++ AV  AGY  P+PIQ++ IP  L   DV G+AQTGTGKTA+F LP++ 
Sbjct: 3   TFNDLGLDPKLLAAVKAAGYQTPSPIQVQAIPHALAGTDVLGLAQTGTGKTAAFGLPLVQ 62

Query: 62  ILEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L  G  +   +  R L+L PTREL  Q+ADN   Y K  ++ V  ++GG     Q + L
Sbjct: 63  QLLGGHDKREPKGVRALVLAPTRELVNQIADNLIAYVKGTHIKVNTVVGGKSINKQVQIL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR++D  +R  + ++    LV+DEAD+MLDMGFI  ++ I   +   RQ
Sbjct: 123 AKGTDILVATPGRLIDLMDRKAVRLDTATFLVLDEADQMLDMGFIHALRRIAPELGTPRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  +++++S  +L +P +++V  P   A+ I         +  K    + +  
Sbjct: 183 TMLFSATMPKQMEELSRAYLTDPVKVQVAAPGKAADKITQGVHWAQDKGDKID--ILKAY 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S +     ++F   K     L   L   GF   +IHGN  Q  R + L+ F++G  +++
Sbjct: 241 LSDEPDGLSLVFARTKHGAERLMKQLCASGFDAVSIHGNKSQGQRDRALAAFRDGKARVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V HVFNFD+PN AENY+HRIGRT RAG  G A +LV  +++ ++  
Sbjct: 301 VATDVAARGIDIPGVSHVFNFDLPNVAENYVHRIGRTARAGADGDAISLVTGDELGYLRD 360

Query: 360 IEKLIEKKVDWLNGDL-SSLNPPLE 383
           I+KL++  +  L G+    L PP +
Sbjct: 361 IQKLMKIDIPVLGGNRPEELAPPKQ 385


>gi|56963965|ref|YP_175696.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
 gi|56910208|dbj|BAD64735.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
          Length = 537

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 151/382 (39%), Positives = 228/382 (59%), Gaps = 9/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +S +V  A+ D G+ +P+PIQ K IP +L   DV G AQTGTGKTA+F +P++  
Sbjct: 4   FTDFDISDQVKQAIQDMGFEEPSPIQEKAIPAILTGGDVIGQAQTGTGKTAAFGIPVVDK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +       R  + LIL PTRELA QV+   +K   +  +    + GG     Q K L +G
Sbjct: 64  VT----EERYIQALILTPTRELAIQVSGELQKLSAHKRIRTLPIYGGQSIGHQIKALRQG 119

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH  RG L +N++  +V+DEAD MLDMGF+  I+ I   V   RQTLL
Sbjct: 120 VQVVIGTPGRMLDHLRRGTLKLNSVHTVVLDEADEMLDMGFVDDIEAILKEVNQVRQTLL 179

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   ++K+S  ++ +PK + +N    TA +I       Y    +        +   
Sbjct: 180 FSATMPPAIRKLSRKYMNDPKTVTINKGEVTAPSINQ---VYYKVLERNKIDSLCRIIDS 236

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D ++ GI+FC  KK V  L  +L+ +G+ V  +HG++ Q  R  ++  F++ +I+ ++A+
Sbjct: 237 DDVELGILFCRTKKGVAELTEALQARGYLVDGLHGDLTQSQRDVVMKKFRDSSIEFLIAT 296

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+D+ +V HV N+D+P   E+Y+HRIGRTGRAGR G A TLV   ++KH+ +IEK
Sbjct: 297 DVAARGIDVENVTHVINYDIPQDPESYVHRIGRTGRAGRTGAAITLVTPREMKHLRSIEK 356

Query: 363 LIEKKVDWLNGDLSSLNPPLEK 384
            I+  +   +  + ++   +EK
Sbjct: 357 EIKMHIP--SASVPTIEEVVEK 376


>gi|309972622|gb|ADO95823.1| ATP-dependent RNA helicase DeaD [Haemophilus influenzae R2846]
          Length = 613

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 140/405 (34%), Positives = 231/405 (57%), Gaps = 20/405 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 5   ITFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E++ K      +  L GG  ++ Q + L
Sbjct: 65  AQIDPSE---KHPQMLVMAPTRELAIQVADACEQFVKYAQGTRIVTLYGGQRYDIQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 122 KQGAQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+ +P+ +++       E       + +  +  +        
Sbjct: 182 TALFSATMPEPIRRITKRFMNDPQEVKIKV---NNENAPDIEQSCWYVHGVRKNEALLRF 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 239 LEVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 299 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 358

Query: 360 IEKLIEKKVDWLN-------------GDLSSLNPPLEKIDIAQHN 391
           IE L++K ++ +                ++ +   LE  D+ Q+ 
Sbjct: 359 IEHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYR 403


>gi|315281538|ref|ZP_07870145.1| dead-box ATP-dependent rna helicase ydbr [Listeria marthii FSL
           S4-120]
 gi|307570401|emb|CAR83580.1| ATP-dependent RNA helicase [Listeria monocytogenes L99]
 gi|313609827|gb|EFR85263.1| dead-box ATP-dependent rna helicase ydbr [Listeria monocytogenes
           FSL F2-208]
 gi|313614811|gb|EFR88348.1| dead-box ATP-dependent rna helicase ydbr [Listeria marthii FSL
           S4-120]
          Length = 518

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 150/372 (40%), Positives = 224/372 (60%), Gaps = 6/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++ GL  K+V +V   G+ + TPIQ KTIPL L   D+ G AQTGTGKTA+F LPM+ 
Sbjct: 5   KFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIH 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++   +    + LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++
Sbjct: 65  KIDQ---KSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L ++++E LV+DEAD ML+MGFI  I+ I   VP  RQTL
Sbjct: 122 NPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++++ E F+ +P+ I +     TA  I          + K+   +   L  
Sbjct: 182 LFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLI---EQFFVKVHEKEKFDVLSRLLD 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA
Sbjct: 239 VQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E
Sbjct: 299 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVE 358

Query: 362 KLIEKKVDWLNG 373
           +  +K++  L  
Sbjct: 359 ETTKKRMQPLQA 370


>gi|255023649|ref|ZP_05295635.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-208]
          Length = 399

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 150/372 (40%), Positives = 224/372 (60%), Gaps = 6/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++ GL  K+V +V   G+ + TPIQ KTIPL L   D+ G AQTGTGKTA+F LPM+ 
Sbjct: 5   KFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIH 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++   +    + LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++
Sbjct: 65  KIDQ---KSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L ++++E LV+DEAD ML+MGFI  I+ I   VP  RQTL
Sbjct: 122 NPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++++ E F+ +P+ I +     TA  I          + K+   +   L  
Sbjct: 182 LFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLI---EQFFVKVHEKEKFDVLSRLLD 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA
Sbjct: 239 VQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E
Sbjct: 299 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVE 358

Query: 362 KLIEKKVDWLNG 373
           +  +K++  L  
Sbjct: 359 ETTKKRMQPLQA 370


>gi|226223484|ref|YP_002757591.1| ATP-dependent RNA helicase [Listeria monocytogenes Clip81459]
 gi|225875946|emb|CAS04650.1| Putative ATP-dependent RNA helicase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|328467139|gb|EGF38229.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 1816]
 gi|328475471|gb|EGF46234.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 220]
          Length = 517

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 150/372 (40%), Positives = 224/372 (60%), Gaps = 6/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++ GL  K+V +V   G+ + TPIQ KTIPL L   D+ G AQTGTGKTA+F LPM+ 
Sbjct: 3   KFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIH 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++   +    + LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++
Sbjct: 63  KIDQ---KSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L ++++E LV+DEAD ML+MGFI  I+ I   VP  RQTL
Sbjct: 120 NPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++++ E F+ +P+ I +     TA  I          + K+   +   L  
Sbjct: 180 LFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLI---EQFFVKVHEKEKFDVLSRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA
Sbjct: 237 VQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E
Sbjct: 297 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVE 356

Query: 362 KLIEKKVDWLNG 373
           +  +K++  L  
Sbjct: 357 ETTKKRMQPLQA 368


>gi|157369574|ref|YP_001477563.1| ATP-dependent RNA helicase RhlE [Serratia proteamaculans 568]
 gi|157321338|gb|ABV40435.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
          Length = 456

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 164/390 (42%), Positives = 239/390 (61%), Gaps = 8/390 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS +++ AV + GY +PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L K    V   R  R LIL PTRELAAQ+ +N E Y K   L   ++ GG+    Q  
Sbjct: 61  QLLSKHDHAVKGRRPVRALILTPTRELAAQIGENVESYSKYLRLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQRAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++   L NP  +EV   ++ +E I     + +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKGLANKLLHNPASVEVARRNTASEQI---EQSVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   K  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G I+
Sbjct: 238 QMIGEGDWKQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKI 385
             IE+L+++++    L G     +   E I
Sbjct: 358 RDIERLLKREIPRIALPGYEPDPSIKAEPI 387


>gi|16799933|ref|NP_470201.1| hypothetical protein lin0859 [Listeria innocua Clip11262]
 gi|217965039|ref|YP_002350717.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Listeria monocytogenes HCC23]
 gi|290892943|ref|ZP_06555933.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-071]
 gi|16413310|emb|CAC96091.1| lin0859 [Listeria innocua Clip11262]
 gi|217334309|gb|ACK40103.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Listeria monocytogenes HCC23]
 gi|290557519|gb|EFD91043.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-071]
          Length = 516

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 150/372 (40%), Positives = 224/372 (60%), Gaps = 6/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++ GL  K+V +V   G+ + TPIQ KTIPL L   D+ G AQTGTGKTA+F LPM+ 
Sbjct: 3   KFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIH 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++   +    + LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++
Sbjct: 63  KIDQ---KSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L ++++E LV+DEAD ML+MGFI  I+ I   VP  RQTL
Sbjct: 120 NPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++++ E F+ +P+ I +     TA  I          + K+   +   L  
Sbjct: 180 LFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLI---EQFFVKVHEKEKFDVLSRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA
Sbjct: 237 VQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E
Sbjct: 297 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVE 356

Query: 362 KLIEKKVDWLNG 373
           +  +K++  L  
Sbjct: 357 ETTKKRMQPLQA 368


>gi|46907098|ref|YP_013487.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47092073|ref|ZP_00229866.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 4b
           H7858]
 gi|254992756|ref|ZP_05274946.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-064]
 gi|255521719|ref|ZP_05388956.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-175]
 gi|258611720|ref|ZP_05241706.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-503]
 gi|293596169|ref|ZP_05228867.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-194]
 gi|293596832|ref|ZP_05264606.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes HPB2262]
 gi|300764074|ref|ZP_07074069.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N1-017]
 gi|46880365|gb|AAT03664.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47019513|gb|EAL10253.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 4b
           H7858]
 gi|258605664|gb|EEW18272.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-503]
 gi|293582796|gb|EFF94828.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes HPB2262]
 gi|293593090|gb|EFG00851.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-194]
 gi|300515064|gb|EFK42116.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N1-017]
 gi|332311273|gb|EGJ24368.1| ATP-dependent RNA helicase [Listeria monocytogenes str. Scott A]
          Length = 519

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 150/372 (40%), Positives = 224/372 (60%), Gaps = 6/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++ GL  K+V +V   G+ + TPIQ KTIPL L   D+ G AQTGTGKTA+F LPM+ 
Sbjct: 5   KFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIH 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++   +    + LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++
Sbjct: 65  KIDQ---KSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L ++++E LV+DEAD ML+MGFI  I+ I   VP  RQTL
Sbjct: 122 NPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++++ E F+ +P+ I +     TA  I          + K+   +   L  
Sbjct: 182 LFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLI---EQFFVKVHEKEKFDVLSRLLD 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA
Sbjct: 239 VQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E
Sbjct: 299 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVE 358

Query: 362 KLIEKKVDWLNG 373
           +  +K++  L  
Sbjct: 359 ETTKKRMQPLQA 370


>gi|161870238|ref|YP_001599408.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
           053442]
 gi|161595791|gb|ABX73451.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
           053442]
          Length = 462

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 159/455 (34%), Positives = 238/455 (52%), Gaps = 14/455 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QKLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    ++P+ IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK I +K+  L  +      P  K   A      K     +KS G  RR  +   ++ 
Sbjct: 360 KIEKYINRKLPELTIE---GMEPTRKRKSAGGKPKGKGGWGDRKSGG--RRGDHKPGKEG 414

Query: 419 HIPLKESE--KISKLQQDIQENDADSLGFRGNMPA 451
                  E  K    ++D  +   +  GF+G   A
Sbjct: 415 FGGKTRGEGFKKEGFKKDGFKKTGE--GFKGKRKA 447


>gi|229506042|ref|ZP_04395551.1| cold-shock DEAD-box protein A [Vibrio cholerae BX 330286]
 gi|229510102|ref|ZP_04399582.1| cold-shock DEAD-box protein A [Vibrio cholerae B33]
 gi|229517768|ref|ZP_04407213.1| cold-shock DEAD-box protein A [Vibrio cholerae RC9]
 gi|229605573|ref|YP_002876277.1| cold-shock DEAD-box protein A [Vibrio cholerae MJ-1236]
 gi|229345804|gb|EEO10777.1| cold-shock DEAD-box protein A [Vibrio cholerae RC9]
 gi|229352547|gb|EEO17487.1| cold-shock DEAD-box protein A [Vibrio cholerae B33]
 gi|229356393|gb|EEO21311.1| cold-shock DEAD-box protein A [Vibrio cholerae BX 330286]
 gi|229372059|gb|ACQ62481.1| cold-shock DEAD-box protein A [Vibrio cholerae MJ-1236]
          Length = 653

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 134/373 (35%), Positives = 211/373 (56%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 16  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 75

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N      L I  G     Q + L
Sbjct: 76  NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 132

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 133 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 192

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL+NP+ ++V   + T   +E  +         +        
Sbjct: 193 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLET 252

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 253 EET---DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HV+N+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 310 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 369

Query: 360 IEKLIEKKVDWLN 372
           IE++    ++ + 
Sbjct: 370 IERVTRSSMEEIQ 382


>gi|188585530|ref|YP_001917075.1| DEAD/DEAH box helicase domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350217|gb|ACB84487.1| DEAD/DEAH box helicase domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 474

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 138/382 (36%), Positives = 223/382 (58%), Gaps = 7/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL+  V+ A+ + G+ + TPIQ + IP V+   D+ G AQTGTGKTA+F +P + 
Sbjct: 3   TFNDLGLNDGVIKAISEMGFEETTPIQRQAIPQVMNGQDIIGQAQTGTGKTAAFGIPYIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +       ++ PTRELA QVA+   + G+   +T   + GG     Q K L++
Sbjct: 63  RIQDPNNKEIKGL--VVTPTRELAIQVAEEINRLGQYNGITALPIYGGQSIGHQIKALKK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++DH NR  + +NN+ ++ +DEAD ML+MGFI  I+ I    P  +QTL
Sbjct: 121 RPQIIVGTPGRLIDHLNRKTIKLNNVNMVTLDEADEMLNMGFIEDIKTILQKTPSHKQTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM   ++ ++E F+ +P+ I   T   T  +IE  +V                   
Sbjct: 181 MFSATMPGPIKSLAEQFMNDPEIIRTKTKEITVPSIEQQYVEVKEGDKFDVFCRL---VD 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  I+F   K+ V  L  +L+K+G+    IHG++ Q  R  ++ NF+ G  +L+VA
Sbjct: 238 SQSPEKAIVFGRTKRRVDELYQALKKRGYFAEGIHGDMPQTKRDHVIKNFRTGATELLVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLD+  + H++NFD+P  A++Y+HRIGRTGRAG+ G A TLV   +  H++ IE
Sbjct: 298 TDVASRGLDVTGISHIYNFDIPQDADSYVHRIGRTGRAGQSGAAVTLVTPREKGHLNLIE 357

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           + I++++        S++  LE
Sbjct: 358 QSIKRQIPRRPK--PSVDEALE 377


>gi|124267275|ref|YP_001021279.1| putative ATP-dependent RNA helicase 1 [Methylibium petroleiphilum
           PM1]
 gi|124260050|gb|ABM95044.1| putative ATP-dependent RNA helicase 1 [Methylibium petroleiphilum
           PM1]
          Length = 453

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 10/397 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+  ++ A++DAGY  PTPIQ + IP V+   D+   AQTGTGKTA FVLPML
Sbjct: 1   MSFKELGLAEPLLQAIVDAGYETPTPIQKQAIPAVMLGGDLLAGAQTGTGKTAGFVLPML 60

Query: 61  TILE-----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L      K        R LIL PTRELAAQV ++   YGK+  L+  ++ GG+  + Q
Sbjct: 61  HRLMARPAVKDARGKSPVRALILTPTRELAAQVEESVRIYGKHAKLSSMVMFGGVGMQPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L+RG D+L+ TPGR+LDH  +  L ++++EI V+DEADRMLDMGFI  I+ + ++VP
Sbjct: 121 IDRLKRGVDILVATPGRLLDHHQQRTLDLSHVEIFVLDEADRMLDMGFIHDIKKVLAIVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE++ +++  L +P+ IEV   +ST ETI            K+    
Sbjct: 181 KQKQSLLFSATFSDEIKTLADRLLNSPQVIEVARRNSTVETIAQKIHPVDRDKKKEL--- 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L         ++FC  K     L   L  Q  +  AIHGN  Q +R K L++FK G 
Sbjct: 238 LAHLIKSQDWHQVLVFCRMKHGANRLTEYLNDQRITAMAIHGNKSQTARTKALADFKSGA 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARG+DI  + HV NF++PN +E+Y+HRIGRTGRAG  G+A +LV  ++  
Sbjct: 298 LQVLVATDIAARGIDIDQLPHVVNFELPNVSEDYVHRIGRTGRAGALGEAVSLVCVDEDG 357

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQH 390
            +  IEKLI++ +  + + G         + I I + 
Sbjct: 358 FLRDIEKLIKRSIPREVVPGFEPDPRAVAQPIQIGRQ 394


>gi|255746441|ref|ZP_05420388.1| cold-shock DEAD-box protein A [Vibrio cholera CIRS 101]
 gi|262148974|ref|ZP_06028121.1| cold-shock DEAD-box protein A [Vibrio cholerae INDRE 91/1]
 gi|255736195|gb|EET91593.1| cold-shock DEAD-box protein A [Vibrio cholera CIRS 101]
 gi|262031252|gb|EEY49869.1| cold-shock DEAD-box protein A [Vibrio cholerae INDRE 91/1]
          Length = 643

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 134/373 (35%), Positives = 211/373 (56%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N      L I  G     Q + L
Sbjct: 66  NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 123 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL+NP+ ++V   + T   +E  +         +        
Sbjct: 183 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLET 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 243 EET---DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HV+N+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVDWLN 372
           IE++    ++ + 
Sbjct: 360 IERVTRSSMEEIQ 372


>gi|15601559|ref|NP_233190.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121588090|ref|ZP_01677839.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 2740-80]
 gi|121730005|ref|ZP_01682420.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V52]
 gi|153819412|ref|ZP_01972079.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae NCTC 8457]
 gi|153823796|ref|ZP_01976463.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae B33]
 gi|227812370|ref|YP_002812380.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae M66-2]
 gi|254849961|ref|ZP_05239311.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MO10]
 gi|298499594|ref|ZP_07009400.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MAK 757]
 gi|9658230|gb|AAF96702.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547686|gb|EAX57782.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 2740-80]
 gi|121628252|gb|EAX60768.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V52]
 gi|126510058|gb|EAZ72652.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae NCTC 8457]
 gi|126518684|gb|EAZ75907.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae B33]
 gi|227011512|gb|ACP07723.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae M66-2]
 gi|254845666|gb|EET24080.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MO10]
 gi|297541575|gb|EFH77626.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MAK 757]
          Length = 663

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 134/373 (35%), Positives = 211/373 (56%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 26  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N      L I  G     Q + L
Sbjct: 86  NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 142

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 143 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 202

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL+NP+ ++V   + T   +E  +         +        
Sbjct: 203 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLET 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 263 EET---DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HV+N+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 320 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 379

Query: 360 IEKLIEKKVDWLN 372
           IE++    ++ + 
Sbjct: 380 IERVTRSSMEEIQ 392


>gi|84385216|ref|ZP_00988248.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01]
 gi|84379813|gb|EAP96664.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01]
          Length = 673

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 148/463 (31%), Positives = 239/463 (51%), Gaps = 35/463 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L L+  ++ A+   G+V PTPIQ   IPL+L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFNELALNDNILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             +   + +   P+ +I+ PTRELA QVA   +  G++ N    L I  G     Q + L
Sbjct: 66  NKINLNQHK---PQAIIMAPTRELAIQVAAEIKNLGRDINGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR+ D   R +L ++     V+DEAD ML MGF+  +  I    P + Q
Sbjct: 123 SRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++ + + +L+NP R++V   + T + +   +         +        
Sbjct: 183 RVLFSATMPPMVKTIVDRYLRNPARVDVAGTNHTVDKVAQNYWVVKGVEKDEAMSRLLET 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 243 EET---DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE++ + +++ +           ++ ++A    A+    +               ++K  
Sbjct: 360 IERVTKSQMEEIQ--------LPQRDEVAAARVAKLGAELE--------------TEKES 397

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
             L+    +    Q+  E DA +L       A +L + +GK  
Sbjct: 398 KALENFAGLISTLQESLEVDAATLA------AMLLKRQQGKSP 434


>gi|312069559|ref|XP_003137738.1| hypothetical protein LOAG_02152 [Loa loa]
 gi|307767094|gb|EFO26328.1| hypothetical protein LOAG_02152 [Loa loa]
          Length = 415

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 205/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++GL   ++  +   G+ KP+ IQ + I    ++ DV   AQ+GTGKTA+F + +L 
Sbjct: 43  NFDEMGLKENLLRGIYAFGFEKPSAIQQRAIIPCTKKRDVIAQAQSGTGKTATFSVAVLQ 102

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++    V+    L++ PTRELA Q+       G+   +     IGG       +KLE 
Sbjct: 103 NIDETIPEVQA---LVMAPTRELAQQIQKVMLSLGEYLGVKCHASIGGTNVRDDQRKLES 159

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  NNI++ V+DEAD ML  GF   I ++   +P   Q +
Sbjct: 160 GVHVVVGTPGRVNDMITRQSLQTNNIKMFVLDEADEMLSRGFKEQIYDVFKCMPNDVQVV 219

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+ +V+  F+ +P RI V     T E I   ++    +  K   L      S
Sbjct: 220 LLSATMPSEVLEVTNRFMNDPIRILVKREELTLEGIRQFYINVEKEEWKFETLCDL--YS 277

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IFCN ++ V  L   + K+ ++V  +HG ++Q  R  I+  F+ G+ ++++ 
Sbjct: 278 TVNVTQAVIFCNTRRKVDYLATQMSKEKYTVSCMHGEMEQSERDVIMREFRSGSSRVLIT 337

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   + + D++ +  IE
Sbjct: 338 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFITEADMRMMKDIE 397

Query: 362 KLIEKKVDWLNGDLSSL 378
                +++ +  D+++L
Sbjct: 398 SFYNTQIEEMPMDIANL 414


>gi|297539139|ref|YP_003674908.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera sp.
           301]
 gi|297258486|gb|ADI30331.1| DEAD/DEAH box helicase domain protein [Methylotenera sp. 301]
          Length = 532

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 167/417 (40%), Positives = 249/417 (59%), Gaps = 12/417 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +LGLS  ++ A+ DAGY  PTPIQ K IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 7   LNFNELGLSEPILRAINDAGYTTPTPIQSKAIPQVLSGGDLLAGAQTGTGKTAGFTLPIL 66

Query: 61  T---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                          PR L+L PTRELAAQ+ ++ + YGK   LT  ++ GG+    Q  
Sbjct: 67  HLLSQKPLSEVVKGRPRCLMLTPTRELAAQIEESVKVYGKFLPLTSTVIFGGVNANPQIA 126

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L++  D+L+ TPGR+LDH N+  + ++ IEILV+DEADRMLDMGFI  I+ I +++P  
Sbjct: 127 RLKKPLDILVATPGRLLDHANQKNVDLSGIEILVLDEADRMLDMGFIRDIKKILAMLPKQ 186

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ +++  L NP  +EV   ++ +E +E         + ++      
Sbjct: 187 RQNLLFSATFSDEIKALADGLLHNPGFVEVARRNTASELVEQTVHMVAQGHKRELMSHL- 245

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               Q+  +  +IF   K     L   L K G    AIHGN  Q +R K L+ FK+GT++
Sbjct: 246 --IQQNDWQQVLIFTRTKHGANRLAEKLVKDGIQSAAIHGNKSQSARTKALAQFKDGTMR 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV +E++K +
Sbjct: 304 VLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSSGAAVSLVDREELKLL 363

Query: 358 DAIEKLIEKKVDWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
             IEKLI++++  +  +  +  + P  +   +   H R     P +  G  +++K +
Sbjct: 364 KDIEKLIKREIPKVQVEGFTPSDKPEPEAPRSTQPHGR-----PPRGHGQGQQRKAH 415


>gi|254228728|ref|ZP_04922151.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262396550|ref|YP_003288403.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|151938675|gb|EDN57510.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262340144|gb|ACY53938.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
          Length = 443

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 130/424 (30%), Positives = 200/424 (47%), Gaps = 8/424 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + KPT IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKDLGLDNRLLKNLKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR +IL PTRELA QV           +   AL++GG  F  Q K L
Sbjct: 61  HKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYEAALILGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH     L +  +E L++DEADRMLD+GF P ++ I       R+
Sbjct: 121 RRYPKFIVATPGRLADHLEHRSLYLEGLETLILDEADRMLDLGFAPELRRIHKAAKHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D                 +    S  E  +         +      +   +
Sbjct: 181 QTLMFSATLDHADVNDIAAEMLNSPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILDRV 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+   +  IIF   + +   L   L ++     A+ GN++Q  R  I+S F+    +++
Sbjct: 241 LSEAEYRQVIIFTATRDDTERLTAKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDI  V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D      
Sbjct: 301 VTTDVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKR 360

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +E  +++ +++     L G    L PP  K D        K +    K +     K++ S
Sbjct: 361 VEAYLQQDLEFSVFEDLKGKFKGLKPP--KPDFRNKKATAKKSRPQAKKSAKKPVKRDKS 418

Query: 415 SQKS 418
             K+
Sbjct: 419 FYKN 422


>gi|37681367|ref|NP_935976.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus YJ016]
 gi|39931700|sp|Q7MGP7|RHLB_VIBVY RecName: Full=ATP-dependent RNA helicase rhlB
 gi|37200119|dbj|BAC95947.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus YJ016]
          Length = 435

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 143/432 (33%), Positives = 218/432 (50%), Gaps = 14/432 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+P+VV  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADLGLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +   PR +I+ PTRELA Q+ ++ E    +  +  AL  GG  ++ Q  
Sbjct: 70  HLLTTHAHEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G DVLI T GRI+D + +    +NNI+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLQGGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPAP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           ++ L    + T   +     F       E        +T        +   ++    L Q
Sbjct: 190 QERLNMLFSATLSYRVQELAFEHMHN-PEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R KIL  F +G++ 
Sbjct: 249 TLIEEEWPDRAIIFANTKYKCESIWAHLAADGHRVGLLTGDVPQKKREKILEQFTQGSVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   ++   ++
Sbjct: 309 LLVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAINL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE+ IE  +   + D    +  L  P+     +  N  R+ N    +S     RK N 
Sbjct: 369 PAIEEYIEHTIPVSDYDSSALIQDLPAPVRTP--SARNQQRRTNTGGARSGD---RKSNN 423

Query: 414 SSQKSHIPLKES 425
              +     KE+
Sbjct: 424 RRPRQPRQHKEA 435


>gi|238750395|ref|ZP_04611896.1| ATP-dependent RNA helicase srmB [Yersinia rohdei ATCC 43380]
 gi|238711326|gb|EEQ03543.1| ATP-dependent RNA helicase srmB [Yersinia rohdei ATCC 43380]
          Length = 438

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 142/442 (32%), Positives = 232/442 (52%), Gaps = 14/442 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP + 
Sbjct: 5   NFSELDLDERLIDALRDKGYERPTAIQASAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K+  L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I +   + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT   + +++ +E  L  P  +E +      + I+  +        K    L   L
Sbjct: 185 LLFSATLEGEAIREFAERILDEPVELEADPSRRERKKIQQWYYRADNIEHKTA--LLVHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  ++  IIF   ++ V  L   L + G +   + G + Q  R + +    +G + ++
Sbjct: 243 LKQPEVQKSIIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDVASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHDHLLLGR 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           I + +++ +      +  L P       ++   A+      +K     +  K  S +K+ 
Sbjct: 363 IGRYLKEPLK--PRVIDELRP------TSKEPSAKSTGKPSKKVLAKRKELKEASKEKAK 414

Query: 420 IPL--KESEKISKLQQDIQEND 439
           + +  ++++ + K ++   + D
Sbjct: 415 VKVRHRDAKNVGKRRKPKDKAD 436


>gi|311112058|ref|YP_003983280.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
 gi|310943552|gb|ADP39846.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
          Length = 695

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 146/375 (38%), Positives = 222/375 (59%), Gaps = 7/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL P+V+ A+ + GY KP+PIQ +TIPL+L   DV G+AQTGTGKTA+F LP L+ 
Sbjct: 106 FTDLGLDPRVLSALEEVGYEKPSPIQEQTIPLLLDGKDVVGLAQTGTGKTAAFALPALSR 165

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKK 118
           +          R  + L+L PTRELA QVA+ F  Y  +      L I  G P+  Q   
Sbjct: 166 MAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAG 225

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RGA V++ TPGR++DH  +G L ++N++ LV+DEAD ML MGF   ++ I    P  +
Sbjct: 226 LRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVETILEGTPDAK 285

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q  LFSATM + ++K+++ +L +P  + V T ++T   I   ++     +          
Sbjct: 286 QVALFSATMPNSIRKIAQQYLNDPTEVRVKTKTTTGANIRQRYMQVMHSHKLDAMTRVLE 345

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +++ D +   I+F   KK    +   L+ +GF   AI+G+I Q+ R + +   ++G I +
Sbjct: 346 VENYDGI---IVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRIDI 402

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  +  V N+D+P+  E+Y+HRIGRTGRAGR G+A   V   +   + 
Sbjct: 403 LVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRDGEAILFVTPREKYMLR 462

Query: 359 AIEKLIEKKVDWLNG 373
            IEK   +KV+ ++ 
Sbjct: 463 QIEKATRQKVEPMHM 477


>gi|145632474|ref|ZP_01788208.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655]
 gi|144986669|gb|EDJ93221.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655]
          Length = 613

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 140/405 (34%), Positives = 229/405 (56%), Gaps = 20/405 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 5   ITFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E + K      +  L GG  ++ Q + L
Sbjct: 65  AQIDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  R  L ++ +  +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 122 KQGAQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+ NP+ +++       E       + +  +  +        
Sbjct: 182 TALFSATMPEPIRRITKRFMNNPQEVKIKV---NNENAPDIDQSCWYVHGVRKNEALLRF 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 239 LEVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 299 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 358

Query: 360 IEKLIEKKVDWLN-------------GDLSSLNPPLEKIDIAQHN 391
           IE L++K ++ +                ++ +   LE  D+ Q+ 
Sbjct: 359 IEHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYR 403


>gi|319896568|ref|YP_004134761.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
 gi|317432070|emb|CBY80420.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
          Length = 613

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 139/405 (34%), Positives = 229/405 (56%), Gaps = 20/405 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 5   ITFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E + K      +  L GG  ++ Q + L
Sbjct: 65  AQIDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 122 KQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+ +P+ +++       E       + +  +  +        
Sbjct: 182 TALFSATMPEPIRRITKRFMNDPQEVKIKV---NNENAPDIDQSCWYVHGVRKNEALLRF 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   +  ++ ++
Sbjct: 239 LEVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNRSLDIV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 299 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 358

Query: 360 IEKLIEKKVDWLN-------------GDLSSLNPPLEKIDIAQHN 391
           IE L++K ++ +                ++ +   LE  D+ Q+ 
Sbjct: 359 IEHLMKKGINEVELPNHEVLQECRRKKFVAKITKQLEHHDLEQYR 403


>gi|260576594|ref|ZP_05844582.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
 gi|259021198|gb|EEW24506.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
          Length = 453

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 157/389 (40%), Positives = 228/389 (58%), Gaps = 10/389 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLSPK+   +  AGY KPTPIQ++ IPL++Q  D+ G+AQTGTGKTA+F LP+L 
Sbjct: 3   TFDSLGLSPKLAKGLEKAGYTKPTPIQLQAIPLIMQGRDLMGLAQTGTGKTAAFGLPLLH 62

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                      R  R LI+ PTREL +Q+++  E + K   + V  + GG     Q+++L
Sbjct: 63  RLLDIGHPPAPRSVRALIMAPTRELVSQISEALEVFTKGTAVKVVTVTGGASLFRQSERL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGADVL+ TPGR++D  +R  L + +   LV+DEAD+MLDMGFI  ++ I   +P  RQ
Sbjct: 123 ARGADVLVATPGRLIDLLDRNALTLEHCGYLVLDEADQMLDMGFIHALKKIAKHLPLKRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   ++ +++ +L++P +++V  P    E I      T      +     +  
Sbjct: 183 TLLFSATMPKLIEDLAQTYLRDPVKVQVAPPGKPIEAIVQGVHYTPQGDKARL---LEEY 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  ++F   K     L   L   GF   +IHGN  Q  R + LS F+EG + ++
Sbjct: 240 LKTHPGEMALVFGRTKHGSEKLMKLLVAWGFKAGSIHGNKSQNQRERTLSEFREGALDVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  V HV+N+D+PN  ENY+HRIGRT RAG  GKA    A  +++ I A
Sbjct: 300 VATDVAARGIDISGVRHVYNYDMPNVPENYVHRIGRTARAGADGKAVAFCAPAEMEEIQA 359

Query: 360 IEKLIEKKVDWLNG-----DLSSLNPPLE 383
           IEKL++ ++  L G     DL+  + P +
Sbjct: 360 IEKLLKTRIPVLGGAPWAADLAGASKPAQ 388


>gi|187929488|ref|YP_001899975.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12J]
 gi|187726378|gb|ACD27543.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
          Length = 493

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 165/390 (42%), Positives = 237/390 (60%), Gaps = 8/390 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F   GL P V+ A+ ++GY KPTPIQ   IP+V   HDV G AQTGTGKTA F LP++
Sbjct: 13  VTFDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGHDVMGAAQTGTGKTAGFSLPII 72

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L         P        IL PTRELA QV DN  KY K   L  A++ GG+    Q
Sbjct: 73  HNLLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQ 132

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L RG ++L+ TPGR+LDH  +  + ++ + +LV+DEADRMLDMGF+P +Q I +L+P
Sbjct: 133 TEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLP 192

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCAL 234
             RQTLLFSAT + E+++++ ++L++P+ IEV   ++TAE +          + +     
Sbjct: 193 AHRQTLLFSATFSPEIKRLAASYLRHPQTIEVARSNATAENVRQVIYTVPDNHKQAALVH 252

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L +    Q   +  I+F N K     L  +LE++G +  AIHG+  Q  RM+ L  FK+G
Sbjct: 253 LLRQRAEQGLPRQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQG 312

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           T+ ++VA+D+AARGLDI  +  V NFD+P  AE+Y+HRIGRTGRAG  G A +L A  D 
Sbjct: 313 TVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDE 372

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
           + +  IEKLI++ +      L+  +P  E+
Sbjct: 373 RLLADIEKLIKRNLPR--EQLADFDPTGEQ 400


>gi|168067781|ref|XP_001785785.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662575|gb|EDQ49411.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 395

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 200/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G+   ++  +   G+ KP+ IQ + +  ++   D    AQ+GTGKT+   L +  
Sbjct: 23  SFDQMGIREDLLRGIYAYGFEKPSAIQQRAVMPIISGRDAIAQAQSGTGKTSMIALTVCQ 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     V+    LIL PTRELAAQ        G   N+     IGG       +KLE 
Sbjct: 83  MIDIATREVQA---LILSPTRELAAQTEKVILAIGDFMNVQAHACIGGKSIGEDIRKLEY 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++L++DE+D ML  GF   I ++   +P   Q +
Sbjct: 140 GVHVVSGTPGRVYDMIKRRTLRTRSIKLLILDESDEMLSRGFKDQIYDVYRYLPPELQVV 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 200 LVSATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   +    F+V A+HG++ Q+ R  I++ F+ GT ++++ 
Sbjct: 258 TLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSAMHGDMPQKERDAIMAEFRSGTTRVLIT 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 318 TDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRSDDIRILRDIE 377

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 378 QYYSTQIDEMPMNVADL 394


>gi|309781736|ref|ZP_07676469.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
 gi|308919377|gb|EFP65041.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
          Length = 498

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 165/390 (42%), Positives = 237/390 (60%), Gaps = 8/390 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F   GL P V+ A+ ++GY KPTPIQ   IP+V   HDV G AQTGTGKTA F LP++
Sbjct: 18  VTFDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGHDVMGAAQTGTGKTAGFSLPII 77

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L         P        IL PTRELA QV DN  KY K   L  A++ GG+    Q
Sbjct: 78  HNLLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQ 137

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L RG ++L+ TPGR+LDH  +  + ++ + +LV+DEADRMLDMGF+P +Q I +L+P
Sbjct: 138 TEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLP 197

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCAL 234
             RQTLLFSAT + E+++++ ++L++P+ IEV   ++TAE +          + +     
Sbjct: 198 AHRQTLLFSATFSPEIKRLAASYLRHPQTIEVARSNATAENVRQVIYTVPDNHKQAALVH 257

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L +    Q   +  I+F N K     L  +LE++G +  AIHG+  Q  RM+ L  FK+G
Sbjct: 258 LLRQRAEQGLPRQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQG 317

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           T+ ++VA+D+AARGLDI  +  V NFD+P  AE+Y+HRIGRTGRAG  G A +L A  D 
Sbjct: 318 TVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDE 377

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
           + +  IEKLI++ +      L+  +P  E+
Sbjct: 378 RLLADIEKLIKRNLPR--EQLADFDPTGEQ 405


>gi|254237339|ref|ZP_04930662.1| hypothetical protein PACG_03411 [Pseudomonas aeruginosa C3719]
 gi|126169270|gb|EAZ54781.1| hypothetical protein PACG_03411 [Pseudomonas aeruginosa C3719]
          Length = 639

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 172/455 (37%), Positives = 250/455 (54%), Gaps = 17/455 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           M F+ LGLS  +  AV  AGY +PT +Q + IP VLQ  D+   AQTGTGKT  F LP  
Sbjct: 1   MSFSSLGLSEALARAVEAAGYSQPTRVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 59  -----MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                      + R   R  R L+L PTRELAAQV D+F+ Y ++  L    + GG+   
Sbjct: 61  ERLFPAGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L +G DVL+  PGR+LD   + K+ ++++EILV+DEADRMLDMGFI  ++ + + 
Sbjct: 121 PQIQALAKGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLFSAT + ++  ++   L NP+RIEV  P++T E IE       A   +   
Sbjct: 181 LPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALL 240

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                  +    +  ++F   K     L   L K G    AIHGN  Q +R K L++FK 
Sbjct: 241 AHL---VTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             ++++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRAGR G+A +LVA ++
Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            K + AIEK+  +++   +GD    +P     ++AQ     +    PQK    D+ +++ 
Sbjct: 358 EKLLKAIEKMTRQRIP--DGDAQGFDPEAVLPEVAQP----EPREAPQKQPRRDKDRRSS 411

Query: 414 SSQKSH-IPLKESEKISKLQQDIQENDADSLGFRG 447
             +K         +      QD  E  A     RG
Sbjct: 412 RERKPKDAQASNPDSNVAAAQDGTEKPAGKRRRRG 446


>gi|218768385|ref|YP_002342897.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
 gi|121052393|emb|CAM08725.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
 gi|319410631|emb|CBY91000.1| putative ATP-dependent RNA helicase [Neisseria meningitidis WUE
           2594]
          Length = 462

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 158/453 (34%), Positives = 235/453 (51%), Gaps = 10/453 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QRLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPEDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    ++P+ IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDADIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK I +K+  L  +      P  K   A      K     +KS G+    K       
Sbjct: 360 KIEKYINRKLPELTIE---GMEPTRKRKSAGGKPKGKGGWGDRKSGGWRGDHKPSKEGFG 416

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
                E  K    ++D  +   +  GF+G   A
Sbjct: 417 GKTRGEGFKKEGFKRDGFKKTGE--GFKGKRKA 447


>gi|125775187|ref|XP_001358845.1| GA20384 [Drosophila pseudoobscura pseudoobscura]
 gi|195144826|ref|XP_002013397.1| GL23429 [Drosophila persimilis]
 gi|54638586|gb|EAL27988.1| GA20384 [Drosophila pseudoobscura pseudoobscura]
 gi|194102340|gb|EDW24383.1| GL23429 [Drosophila persimilis]
          Length = 399

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L 
Sbjct: 27  TFNAMNLKEELLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQ 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+      ++     L PTRELA Q+       G   N+   + IGG       +KL+ 
Sbjct: 87  SLDTTLRETQVLC---LSPTRELAVQIQKVILALGDMMNVLCHVCIGGTNLGEDIRKLDY 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 144 GQHIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 204 LISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 261

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R +I+  F+ G  ++++ 
Sbjct: 262 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLIT 321

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 322 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIE 381

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 382 QYYSTQIDEMPMNVADL 398


>gi|327278500|ref|XP_003224000.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like [Anolis
           carolinensis]
          Length = 1030

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 141/448 (31%), Positives = 232/448 (51%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 371 TWVQCGISMKILNSLKKHGYEKPTPIQAQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFR 430

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   + V  + GG     Q  +L
Sbjct: 431 HIMDQRPLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGVRVVCVYGGTGISEQIAEL 490

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     N     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 491 KRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 550

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S               +   K   L 
Sbjct: 551 DRQTVMFSATFPRAMEALARRILNKPIEVQVGGRSVVCSD--VEQNVIVIEEENKFLKLL 608

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL         IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK G  
Sbjct: 609 ELLGHFQEQGAVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKSGVC 668

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 669 KLLVATSVAARGLDVKHLMLVINYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARY 728

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     L+G  + +   LEK+     +  +      +KS+GF  +   +   
Sbjct: 729 AGDIIKALE-----LSG--TPVPSELEKLWNDFKDQQKAEGKTIKKSSGFSGKGFKFDET 781

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +   E +K+ K    +Q++D +   
Sbjct: 782 EEAL-ANERKKLQKAALGLQDSDDEDTA 808


>gi|238059366|ref|ZP_04604075.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           sp. ATCC 39149]
 gi|237881177|gb|EEP70005.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           sp. ATCC 39149]
          Length = 576

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 143/366 (39%), Positives = 210/366 (57%), Gaps = 1/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL  +++ A+   GY +PTPIQ + IP +L   D+ G A TGTGKTA+F LP+L  
Sbjct: 28  FTDLGLRAELLGALSALGYEEPTPIQREAIPPLLAGRDLLGQAATGTGKTAAFALPLLHR 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +  GRA    P  L+L PTRELA QV++ F +YGK+    V  + GG P   Q + L+ G
Sbjct: 88  MPDGRA-GGEPVALVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALDLG 146

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR LDH  RG L +  +  +V+DEAD MLDMGF   I+ I    P  RQT+L
Sbjct: 147 VDVVVATPGRALDHIARGTLRLGGLATVVLDEADEMLDMGFAEDIEAILEHAPQQRQTVL 206

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +  ++   L +P RI++      A        + Y             +   
Sbjct: 207 FSATMPSRIDGMARQHLTDPVRIQIGREQQVAGETPRVRQSAYIVARAHKPAALGRVLDV 266

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           ++    I+FC  ++ V  L  ++  +G+   A+HG + Q  R +++   + GT  L+VA+
Sbjct: 267 ESPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVAT 326

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  + HV N+DVP+  E+Y+HRIGR GRAGR G A TL    + + +  IE+
Sbjct: 327 DVAARGLDVEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIER 386

Query: 363 LIEKKV 368
           +  +++
Sbjct: 387 VTGQRI 392


>gi|311109370|ref|YP_003982223.1| DEAD/DEAH box helicase family protein [Achromobacter xylosoxidans
           A8]
 gi|310764059|gb|ADP19508.1| DEAD/DEAH box helicase family protein [Achromobacter xylosoxidans
           A8]
          Length = 590

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 160/452 (35%), Positives = 246/452 (54%), Gaps = 11/452 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F +LGL+P ++ AV +AG+  PTP+Q   IP  L  HD+   +QTG+GKTA+F+LP +
Sbjct: 1   MSFENLGLAPALLSAVQEAGFSTPTPVQASAIPQALAGHDLMVSSQTGSGKTAAFMLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
             I +    +    + L+L PTRELA QV D    YG+       A ++GG+P+ AQ K 
Sbjct: 61  HRIAQMPANKGVGVQVLVLTPTRELALQVTDATATYGRKLADLRTATVVGGMPYGAQLKA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R  DVL+ TPGR++DH N G++ +N +  LV+DEADRMLDMGFI  I+ I   +P  R
Sbjct: 121 LSRRVDVLVATPGRLIDHLNSGRVKLNTVHTLVLDEADRMLDMGFIEDIETIVGRLPEDR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+   + K++   +++P+RIE+         I    +       K    L   
Sbjct: 181 QTLLFSATLDGTIAKLAARMMRDPQRIEMAGAKEKHTNITQSLLYADDASHK--MQLLDH 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   I+F + K+   +L   L  QGF+  A+HG+++QR R + LS  + G +++
Sbjct: 239 VLRDAALDQAIVFTSTKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLSQLQRGQLRI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + H  NFD+P +AE+Y+HRIGRTGRAGR G AFTL    +   + 
Sbjct: 299 LVATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRTGRAGRSGLAFTLATHSERHKVR 358

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IE  I + +      ++ L P             +     P      +R  +++   + 
Sbjct: 359 RIEHYIGQSIT--PEVIAGLEPKRTPRPSTGGGGGKPYGKRPGGGYQGNREGRSFGGPRG 416

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMP 450
               +E        Q  +++     G++GN P
Sbjct: 417 EFKPRE-----GGYQGNRDSAPREGGYQGNRP 443


>gi|152981148|ref|YP_001352987.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151281225|gb|ABR89635.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 448

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 174/417 (41%), Positives = 246/417 (58%), Gaps = 18/417 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL+  +V AV ++GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFTDLGLAEGIVRAVTESGYTNPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TI------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                        +  R  R L+L PTRELAAQV ++   YGK  NL  A++ GG+    
Sbjct: 61  HRLATSGTPHASASAQRPIRALVLTPTRELAAQVEESVRTYGKYLNLNSAVIFGGVGINP 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q K L+ G D+L+ TPGR+LDH  +G + +N+I+ILV+DEADRMLDMGFI  I+ + + +
Sbjct: 121 QIKMLKHGVDILVATPGRLLDHMQQGTVNLNHIQILVLDEADRMLDMGFIKDIRRVLAAL 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT ++E++ +++  L +P  IEV   +ST E IE                
Sbjct: 181 PKNRQNLLFSATFSNEIKALADGLLNSPATIEVARRNSTVEIIEQKIHPVDRDKK---HP 237

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   L   +     ++F   K     L   LEK G S  AIHGN  Q +R + LS FK+G
Sbjct: 238 MLAHLIKSNNWSQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTRALSEFKDG 297

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           ++Q++VA+D+AARG+DI  + HV N+D+PN  E+Y+HRIGRTGRAG  G+A +LV  +++
Sbjct: 298 SLQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEL 357

Query: 355 KHIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           + +  IEKLI++K+  + + G    LN   + I        R++N  P +      R
Sbjct: 358 EMLKDIEKLIKRKLPSEVIPGFEPDLNAKPQPIQ-------RRSNDAPGRRPQGQGR 407


>gi|197336796|ref|YP_002158115.1| ATP-dependent RNA helicase [Vibrio fischeri MJ11]
 gi|197314048|gb|ACH63497.1| ATP-dependent RNA helicase [Vibrio fischeri MJ11]
          Length = 460

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 120/424 (28%), Positives = 197/424 (46%), Gaps = 12/424 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +      KPT IQ K +P+ +   DV   ++TG+GKT +FVLPML
Sbjct: 16  LQFKDLGLDNRLLKNLAHQNIKKPTEIQRKAVPVAIAGKDVLASSKTGSGKTLAFVLPML 75

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        PR +IL PTRELA QV  +             L+ GG  F  Q   L
Sbjct: 76  HKSLKTKSFSKNDPRAVILAPTRELAKQVYSHLRAMLGGLTYDATLITGGENFNDQVNAL 135

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +    ++ TPGR+ DH     L ++ +E L++DEADRMLD+GF  ++Q I       R+
Sbjct: 136 RKHPKFIVATPGRLADHLEHQSLYLDGLETLILDEADRMLDLGFAEHLQKIHKAASHRRR 195

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D                 ++   S  E  +         +      +   +
Sbjct: 196 QTLMFSATLDHDAVNKFAGNMLDNPKRISVGLSNDEHKDITQRFYLCDHLDHKQAILNKI 255

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     +IF   + +   L   L ++     A+ G+++Q +R  I+S F+    +++
Sbjct: 256 IETEDYFQIMIFTATRSDTDRLTKLLNEENLKAVALSGDMNQTARNNIMSQFERRVHKIL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+  V HV NFD+P   E Y+HR+GRTGRAG+ G A +LV  +D +    
Sbjct: 316 VTTDVASRGLDLTSVTHVINFDMPKHMEEYVHRVGRTGRAGKKGTAISLVGPKDWESFKR 375

Query: 360 IEKLIEKKV-----DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +E  +++ +     + L G    L P  ++         +K +P   K+ G   + K   
Sbjct: 376 VETFLQQDLSFSVFEELKGKFKGLKPKHKR------TFVKKGDPKKFKAKGNQNKPKAPK 429

Query: 415 SQKS 418
            + +
Sbjct: 430 KRDN 433


>gi|59713557|ref|YP_206332.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|59481805|gb|AAW87444.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 434

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 165/433 (38%), Positives = 248/433 (57%), Gaps = 21/433 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+ +++  V + G+ + TPIQ + IPLVLQ HDV   AQTGTGKTA+F LP++
Sbjct: 17  MSFASLGLTKQILTTVAELGFKEATPIQEQAIPLVLQGHDVLAGAQTGTGKTAAFGLPLI 76

Query: 61  TI----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                   +     ++ R+LIL PTRELA QV D+   Y +N  L V +  GG     Q 
Sbjct: 77  QRLIESPIERHEESKVVRSLILTPTRELAQQVFDSLVSYTQNTELKVVVAYGGTSINVQK 136

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  GAD+LI TPGR+LDH +   + +N  E LV+DEADRMLDMGFIP I+ I   +P 
Sbjct: 137 ENLLGGADILIATPGRLLDHLHIKTITLNQAEYLVLDEADRMLDMGFIPDIKKILRKMPD 196

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSAT + ++++++   L  PK ++V   +STAET+E            +     
Sbjct: 197 ERQTLFFSATFSKKVREIAYYMLNKPKEVQVTPTNSTAETVEQMVYPVDKHRKSEL---L 253

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L      +  ++F   K+    L   L+K G    +I+G+  Q +R++ L  FK G +
Sbjct: 254 AYLIGSRNWQQVLVFTKTKQGSDELVKELKKDGIKAASINGDKSQGARLRALEEFKTGKV 313

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V N+++P +AE+Y+HRIGRTGRAG  GKA +L++ ++   
Sbjct: 314 RALIATDVAARGLDIEQLECVINYELPFKAEDYVHRIGRTGRAGHTGKAISLMSMDEEYL 373

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           + AIE L++ ++  +WL G     N PL           R++ P   +    D+RK   +
Sbjct: 374 LKAIETLLDTRLPQEWLQGYEPDPNAPL-----------REDRPRQSRGRSSDKRKMK-A 421

Query: 415 SQKSHIPLKESEK 427
             K H    ++++
Sbjct: 422 KLKIHANRGKNKR 434


>gi|237736924|ref|ZP_04567405.1| ATP-dependent RNA helicase [Fusobacterium mortiferum ATCC 9817]
 gi|229420786|gb|EEO35833.1| ATP-dependent RNA helicase [Fusobacterium mortiferum ATCC 9817]
          Length = 545

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 127/368 (34%), Positives = 209/368 (56%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
            F +LGLS K + A+   GY +PTPIQ  TIP +L    D+ G AQTGTGKTA+F LP+L
Sbjct: 6   QFRELGLSEKTLKALAKKGYEQPTPIQALTIPALLNGDKDIIGQAQTGTGKTAAFSLPIL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E  +      + ++L PTRELA QVA+          + +  + GG   E Q ++L+
Sbjct: 66  ENFEPSKV----IQAIVLAPTRELALQVAEEMNSLAHGKKIRITPVYGGQSIEFQIRQLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TPGR++D   R  + + +++  ++DEAD ML+MGF+  I+ I       ++ 
Sbjct: 122 KGTDIIVGTPGRVIDLMERKLIKLQDLKYFILDEADEMLNMGFVEDIEKILEATNEDKRM 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM +E+ K+++N +++ + + V     T +         +  + K        + 
Sbjct: 182 LFFSATMPNEIMKIAKNHMKDYEVLAVKARELTTDLT---DQIYFEVHEKDKFEALCRII 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  GI+FC  K +  +L   L  +G+    +HG+I Q  R   L  FK   I ++V
Sbjct: 239 DLTRDFYGIVFCRTKNDANDLVGKLNDRGYDAEGLHGDISQNYREVTLKRFKAKKINVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV N+ +P  AE+Y+HRIGRTGRAG+ G A T +  ++ + +  I
Sbjct: 299 ATDVAARGIDVNDLSHVINYSIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 358

Query: 361 EKLIEKKV 368
           +++++ ++
Sbjct: 359 QRIVKTEI 366


>gi|256424779|ref|YP_003125432.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256039687|gb|ACU63231.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 492

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 152/432 (35%), Positives = 236/432 (54%), Gaps = 18/432 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGL   ++ A+ + GY  PTPIQ + IP VL   D+ G AQTGTGKTA+F +P+L
Sbjct: 27  LSFEQLGLIEPLLKALDNEGYTAPTPIQQQAIPHVLDTRDLLGCAQTGTGKTAAFAIPLL 86

Query: 61  TILEKGRARVR-----MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            ++ + +   +       + LIL PTRELA Q+ ++F  YGK  +L   ++ GG+    Q
Sbjct: 87  QLMHQDQQAQQRKGLRNIKALILTPTRELAIQIQESFTAYGKFLDLKSLVIFGGVSQHPQ 146

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L++G D+LI TPGR+LD  ++  + + +I+  V+DEADRMLDMGF+  +Q +   +P
Sbjct: 147 TEALKKGVDILIATPGRLLDLISQNYITLRDIKYFVLDEADRMLDMGFVHDVQRVIVKLP 206

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ+L FSATM  E+Q +++  L+N       TP S+        +    +  K    L
Sbjct: 207 EQRQSLFFSATMPPEIQTLAKAILRNNPAKVEVTPVSSTAETITQSMYFVNKNDK--RNL 264

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              +     +K  ++F   K     +   L K   +  AIHGN  Q +R + L+NFK   
Sbjct: 265 LLHILKDKAIKTLLVFTRTKHGADRVVKDLHKAEITAEAIHGNKSQNARQRALNNFKSQQ 324

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            +++VA+D+AARG+DI ++ HV N+++PN  E Y+HRIGRTGRAG  G A +    E+  
Sbjct: 325 TRVLVATDIAARGIDIDELTHVVNYELPNVPETYVHRIGRTGRAGADGIAISFCEPEEKA 384

Query: 356 HIDAIEKLIEKKV------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            +  I KLI +++       + NGD  +L  P      A     ++ +P  +K  GF R 
Sbjct: 385 FLKDILKLISREIPVETEHPFHNGDSMALPAP----KPAPQQKPKQQHPRDKKG-GFSRN 439

Query: 410 KKNYSSQKSHIP 421
           ++     +   P
Sbjct: 440 RQGVVQSRDARP 451


>gi|293602448|ref|ZP_06684894.1| ATP-dependent RNA helicase [Achromobacter piechaudii ATCC 43553]
 gi|292819210|gb|EFF78245.1| ATP-dependent RNA helicase [Achromobacter piechaudii ATCC 43553]
          Length = 597

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 161/456 (35%), Positives = 248/456 (54%), Gaps = 9/456 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F +LGL+P ++ AV +AG+  PT +Q   IP  L  HD+   +QTG+GKTA+F+LP +
Sbjct: 1   MSFENLGLAPALLSAVQEAGFNTPTAVQAAAIPQALAGHDLMVSSQTGSGKTAAFMLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
             I +    +    + L+L PTRELA QV +    YG+       A ++GG+P+ AQ K 
Sbjct: 61  HRIAQMPANKGVGVQVLVLTPTRELALQVTEATATYGRKLADLRTATVVGGMPYGAQLKA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R  DVL+ TPGR++DH   G++ +N +  LV+DEADRMLDMGFI  I+ I S +P  R
Sbjct: 121 LSRRVDVLVATPGRLIDHLQSGRVKLNTVHTLVLDEADRMLDMGFIEDIETIVSRLPEDR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+   + K++   +++P+RIE+         I    +       K    L   
Sbjct: 181 QTLLFSATLDGTIAKLAAKMMRDPQRIEMAGAKEKHTNITQSLLYADDASHK--MQLLDH 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   I+F + K+   +L   L  QGF+  A+HG+++QR R + LS  + G +++
Sbjct: 239 VLRDAKLDQAIVFTSTKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLSQLQRGQLRI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + H  NFD+P +AE+Y+HRIGRTGRAGR+G AFTL    +   + 
Sbjct: 299 LVATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRTGRAGRNGLAFTLATHSERHKVR 358

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA-RKNNPIPQKSTGF--DRRKKNYSS 415
            IE  I + +      ++ L P       A  + A R   P  ++  GF   R +  Y  
Sbjct: 359 RIEHYIGQSIT--PEVIAGLEPKRTPRPSAGGSGAPRGGKPFGKRPGGFGGSRHEGGYQG 416

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
            + +       +    + + +  +    G R   P 
Sbjct: 417 NRENRSFGGPREGGAPRGEFKPREGGYQGNRDGAPR 452


>gi|261392357|emb|CAX49897.1| putative ATP-dependent RNA helicase [Neisseria meningitidis 8013]
 gi|325204361|gb|ADY99814.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240355]
          Length = 462

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 158/453 (34%), Positives = 235/453 (51%), Gaps = 10/453 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QRLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    ++P+ IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK I +K+  L  +      P  K   A      K     +KS G+    K       
Sbjct: 360 KIEKYINRKLPELTIE---GMEPTRKRKSAGGKPKGKGGWGDRKSGGWRGDHKPGKEGFG 416

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
                E  K    ++D  +   +  GF+G   A
Sbjct: 417 GKTRGEGFKKEGFKKDGFKKTGE--GFKGKRKA 447


>gi|254674247|emb|CBA10031.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha275]
          Length = 462

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 158/453 (34%), Positives = 235/453 (51%), Gaps = 10/453 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QRLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    ++P+ IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK I +K+  L  +      P  K   A      K     +KS G+    K       
Sbjct: 360 KIEKYINRKLPELTIE---GMEPTRKRKSAGGKPKGKGGWGDRKSGGWRGDHKPGKEGFG 416

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
                E  K    ++D  +   +  GF+G   A
Sbjct: 417 GKTRGEGFKKEGFKKDGFKKTGE--GFKGKRKA 447


>gi|229526685|ref|ZP_04416089.1| cold-shock DEAD-box protein A [Vibrio cholerae bv. albensis VL426]
 gi|229336843|gb|EEO01861.1| cold-shock DEAD-box protein A [Vibrio cholerae bv. albensis VL426]
          Length = 651

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 133/373 (35%), Positives = 211/373 (56%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 16  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 75

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N      L I  G     Q + L
Sbjct: 76  NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 132

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 133 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 192

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL++P+ ++V   + T   +E  +         +        
Sbjct: 193 RVLFSATMPPMVKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLET 252

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 253 EET---DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HV+N+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 310 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 369

Query: 360 IEKLIEKKVDWLN 372
           IE++    ++ + 
Sbjct: 370 IERVTRSSMEEIQ 382


>gi|229514239|ref|ZP_04403700.1| cold-shock DEAD-box protein A [Vibrio cholerae TMA 21]
 gi|229522353|ref|ZP_04411769.1| cold-shock DEAD-box protein A [Vibrio cholerae TM 11079-80]
 gi|229528334|ref|ZP_04417725.1| cold-shock DEAD-box protein A [Vibrio cholerae 12129(1)]
 gi|229334696|gb|EEO00182.1| cold-shock DEAD-box protein A [Vibrio cholerae 12129(1)]
 gi|229340338|gb|EEO05344.1| cold-shock DEAD-box protein A [Vibrio cholerae TM 11079-80]
 gi|229348219|gb|EEO13177.1| cold-shock DEAD-box protein A [Vibrio cholerae TMA 21]
          Length = 653

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 133/373 (35%), Positives = 211/373 (56%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 16  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 75

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N      L I  G     Q + L
Sbjct: 76  NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 132

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 133 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 192

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL++P+ ++V   + T   +E  +         +        
Sbjct: 193 RVLFSATMPPMVKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLET 252

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 253 EET---DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HV+N+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 310 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 369

Query: 360 IEKLIEKKVDWLN 372
           IE++    ++ + 
Sbjct: 370 IERVTRSSMEEIQ 382


>gi|254226977|ref|ZP_04920540.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V51]
 gi|125620490|gb|EAZ48861.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V51]
          Length = 576

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 133/373 (35%), Positives = 211/373 (56%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 26  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N      L I  G     Q + L
Sbjct: 86  NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 142

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 143 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 202

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL++P+ ++V   + T   +E  +         +        
Sbjct: 203 RVLFSATMPPMVKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLET 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 263 EET---DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HV+N+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 320 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 379

Query: 360 IEKLIEKKVDWLN 372
           IE++    ++ + 
Sbjct: 380 IERVTRSSMEEIQ 392


>gi|147671700|ref|YP_001215271.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
 gi|153216449|ref|ZP_01950468.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 1587]
 gi|153802978|ref|ZP_01957564.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MZO-3]
 gi|153830498|ref|ZP_01983165.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 623-39]
 gi|254292037|ref|ZP_04962815.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae AM-19226]
 gi|297580174|ref|ZP_06942101.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae RC385]
 gi|124114251|gb|EAY33071.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 1587]
 gi|124121501|gb|EAY40244.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MZO-3]
 gi|146314083|gb|ABQ18623.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
 gi|148874031|gb|EDL72166.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 623-39]
 gi|150422062|gb|EDN14031.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae AM-19226]
 gi|227015452|gb|ACP11661.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
 gi|297535820|gb|EFH74654.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae RC385]
          Length = 663

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 133/373 (35%), Positives = 211/373 (56%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 26  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N      L I  G     Q + L
Sbjct: 86  NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 142

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 143 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 202

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL++P+ ++V   + T   +E  +         +        
Sbjct: 203 RVLFSATMPPMVKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLET 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 263 EET---DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HV+N+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 320 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 379

Query: 360 IEKLIEKKVDWLN 372
           IE++    ++ + 
Sbjct: 380 IERVTRSSMEEIQ 392


>gi|153827325|ref|ZP_01979992.1| cold-shock deAd box protein a [Vibrio cholerae MZO-2]
 gi|262169080|ref|ZP_06036773.1| cold-shock DEAD-box protein A [Vibrio cholerae RC27]
 gi|262190964|ref|ZP_06049177.1| cold-shock DEAD-box protein A [Vibrio cholerae CT 5369-93]
 gi|149738767|gb|EDM53109.1| cold-shock deAd box protein a [Vibrio cholerae MZO-2]
 gi|262022361|gb|EEY41069.1| cold-shock DEAD-box protein A [Vibrio cholerae RC27]
 gi|262033168|gb|EEY51693.1| cold-shock DEAD-box protein A [Vibrio cholerae CT 5369-93]
          Length = 643

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 133/373 (35%), Positives = 211/373 (56%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N      L I  G     Q + L
Sbjct: 66  NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 123 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL++P+ ++V   + T   +E  +         +        
Sbjct: 183 RVLFSATMPPMVKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLET 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 243 EET---DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HV+N+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVDWLN 372
           IE++    ++ + 
Sbjct: 360 IERVTRSSMEEIQ 372


>gi|85103782|ref|XP_961600.1| eukaryotic initiation factor 4A-12 [Neurospora crassa OR74A]
 gi|74625334|sp|Q9P735|FAL1_NEUCR RecName: Full=ATP-dependent RNA helicase fal-1
 gi|16415977|emb|CAB88547.2| probable translation initiation factor eIF-4A [Neurospora crassa]
 gi|28923147|gb|EAA32364.1| eukaryotic initiation factor 4A-12 [Neurospora crassa OR74A]
          Length = 400

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + ML 
Sbjct: 27  TFESMSLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQ 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 87  VIDTA---VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDY 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 144 GQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVV 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 204 VVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDL--YD 261

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG++ Q+ R  I+ +F++G  +++++
Sbjct: 262 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLIS 321

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 322 TDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIE 381

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 382 LYYSTQIDEMPMNVADL 398


>gi|73540223|ref|YP_294743.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72117636|gb|AAZ59899.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 506

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 161/372 (43%), Positives = 233/372 (62%), Gaps = 6/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY  PTPIQ + IP +L+  D+   AQTGTGKTA F LPML
Sbjct: 1   MSFSELGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML 60

Query: 61  T---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                    R      R L+L PTRELAAQV ++   YGK   L   ++ GG+    Q +
Sbjct: 61  QLLSESAPQRQGKPAVRALVLTPTRELAAQVEESVRNYGKYVRLRSMVMFGGVGINPQIE 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG ++++ TPGR+LDH ++  + ++++E+LV+DEADRMLDMGFI  I+ I +++P  
Sbjct: 121 QLRRGVEIVVATPGRLLDHVSQRTIDLSSVELLVLDEADRMLDMGFIHDIRKILNVLPPK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ +++  L NP  IEV   ++TAET+         +  ++      
Sbjct: 181 RQNLLFSATFSDDIRALADRLLNNPASIEVARRNTTAETVAQRVYPVDRERKREL---LA 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +      ++F   K     L   L K G S  AIHGN  Q +R + LS FK GT++
Sbjct: 238 HLVREHDWHQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEFKAGTLR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++   +
Sbjct: 298 LLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDEHGLL 357

Query: 358 DAIEKLIEKKVD 369
             IE+LI++K++
Sbjct: 358 RDIERLIKRKLE 369


>gi|221133986|ref|ZP_03560291.1| ATP-dependent RNA helicase [Glaciecola sp. HTCC2999]
          Length = 622

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 143/373 (38%), Positives = 220/373 (58%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L  +++ A+   GY  P+PIQ ++IPL+L+ HD+ G AQTGTGKTA+F LPML
Sbjct: 7   MTFKDLNLPSEILQALEKVGYETPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPML 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++        P+ L+L PTRELA QVA+ F+ Y         L I  G  ++ Q ++L
Sbjct: 67  ANIDV---EESFPQLLVLAPTRELAIQVAEAFQVYASFSKKIRVLPIYGGQSYDNQIRQL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGR++DH  R  L ++ ++ LV+DEAD ML MGFI  ++ I S  P  +Q
Sbjct: 124 KRGVQVVVGTPGRVIDHIQRKTLKLDRLKFLVLDEADEMLRMGFIDDVELILSHSPKEKQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM   ++K++E +L  PK +++ +  STA TI   +      +          +
Sbjct: 184 TALFSATMPGPIKKITERYLHEPKHVKIASKVSTASTIRQRYCQVAGHHK---LEALTRI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     I+F   K   + L   L  +G+ V  ++G+I Q+SR + +   K G+I ++
Sbjct: 241 LEVEQFDGVIVFVRTKTATLELADKLSARGYDVEPLNGDIPQKSRERTVERLKSGSIDIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+ ARGLD+  V HV NFD+P   E+Y+HRIGRTGRAGR G A   ++  + + +  
Sbjct: 301 IATDVVARGLDVERVSHVINFDIPYDTESYVHRIGRTGRAGRQGDAILFISHREKRLLFQ 360

Query: 360 IEKLIEKKVDWLN 372
           IEK  ++ ++ + 
Sbjct: 361 IEKTTKQSIEQMP 373


>gi|159901480|ref|YP_001547727.1| DEAD/DEAH box helicase domain-containing protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894519|gb|ABX07599.1| DEAD/DEAH box helicase domain protein [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 584

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 141/370 (38%), Positives = 217/370 (58%), Gaps = 6/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL    + A+ + GY +PTPIQ ++I L+L  +D+   AQTGTGKTA+F LP + 
Sbjct: 3   TFTELGLGEATLRAITELGYEEPTPIQAQSIGLMLSGNDIIAQAQTGTGKTAAFSLPTIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +    + LIL PTRELA QV+D    YGK  N+    + GG P + Q + L+R
Sbjct: 63  RIDP---KAMGVQALILTPTRELAVQVSDAISAYGKYLNIRALPVYGGQPIDRQLRALKR 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G +++I TPGR++DH  RG L ++ +  +V+DEAD ML+MGF+  I+ I    P  RQT 
Sbjct: 120 GVNIVIGTPGRLMDHMERGTLDLSTVRTVVLDEADEMLNMGFVDDIEYILERAPKDRQTA 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SATM DE+ +++  +L++P+ + +     T   I       Y   ++    +   +  
Sbjct: 180 LYSATMPDEIARLARKYLRSPQMVTIEREQLTVPQIRQ---VYYEIGARDKFEVLTRILD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  K  V  L   L  +G+    +HG++ Q  R +++  F+E  ++++VA
Sbjct: 237 LEMPTSAIIFCRTKAMVDELGEKLLARGYGAELLHGDLSQAMRDRVMKRFREEQVEILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV N+D+P   E Y+HRIGRTGRAGR G A TLV   + + +  IE
Sbjct: 297 TDVAARGLDIEHVSHVINYDIPLDPEAYVHRIGRTGRAGRSGVAVTLVTPRERRQLRTIE 356

Query: 362 KLIEKKVDWL 371
           ++    +  L
Sbjct: 357 RMTGAPIQRL 366


>gi|318054604|ref|NP_001187599.1| eukaryotic initiation factor 4a-iii [Ictalurus punctatus]
 gi|308323464|gb|ADO28868.1| eukaryotic initiation factor 4a-iii [Ictalurus punctatus]
          Length = 389

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 17  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVSAQSQSGTGKTATFCVSVLQ 76

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 77  CLDI---QVRETQALILAPTRELAGQIQKVLLALGDFMNVQCHACIGGTNVGEDIRKLDY 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 134 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 194 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 252 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ A GLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 312 TDVWAGGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 371

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 372 QYYSTQIDEMPMNVADL 388


>gi|221053806|ref|XP_002258277.1| eukaryotic initiation factor [Plasmodium knowlesi strain H]
 gi|193808110|emb|CAQ38814.1| eukaryotic initiation factor, putative [Plasmodium knowlesi strain
           H]
          Length = 390

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 193/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++G+   ++  +   G+ KP+ IQ + I  +L   DV   +Q+GTGKT  F +  L 
Sbjct: 18  SFENIGIDEGLLRGIYAYGFEKPSAIQQRGIKPILSGRDVILQSQSGTGKTCVFAVGALN 77

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + +  +  ++    IL PTRELA Q            ++T+   IGG       K L  
Sbjct: 78  CVNRNLSETQVI---ILSPTRELAEQTQKVCLALADYIHVTIYCCIGGKKMSDDIKALNN 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGRI    N   L    I+ LVIDEAD ML+ GF   + +I   +    Q +
Sbjct: 135 GVHIISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPNTQIV 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+  P +I V     T E I+  FV+   +  K        L  
Sbjct: 195 LSSATLPQEVLEITNKFMHRPVKILVKRDELTLEGIKQFFVSIEKEQWKYET--LADLYE 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   ++FCN K  V  L   +++  F+VC +H  + Q  R  I+  F++   +++++
Sbjct: 253 SLTITQAVVFCNTKMKVDWLTKKMQEANFTVCKMHAGMSQSERDDIMLKFRQCKFRVLIS 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+  RGLD+ +V  V N+D+PN  E+YIHRIGR+GR GR G A   V  +DIK +  IE
Sbjct: 313 TDIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIE 372

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 373 QYYSTQIDEMPMNITEL 389


>gi|213406593|ref|XP_002174068.1| ATP-dependent RNA helicase, eIF4A related [Schizosaccharomyces
           japonicus yFS275]
 gi|212002115|gb|EEB07775.1| ATP-dependent RNA helicase, eIF4A related [Schizosaccharomyces
           japonicus yFS275]
          Length = 394

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L   ++  +   GY  P+ IQ + I  + +  DV   AQ+GTGKTA+F + +L 
Sbjct: 22  SFEEMKLKEDLLRGIYAYGYETPSAIQSRAITQICKGRDVIAQAQSGTGKTATFSIGILQ 81

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     VR  + LIL PTRELA Q+ +     G + N+     IGG       KKL+ 
Sbjct: 82  SIDLS---VRETQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDY 138

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L + N+++LV+DEAD +L+ GF   I +I   +P   Q +
Sbjct: 139 GQHVVSGTPGRVTDMIRRRNLRVRNVKMLVLDEADELLNRGFKDQIYDIYRYLPPGTQVV 198

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++ +++  F  +P RI V     T E ++  F+A   +  K   L       
Sbjct: 199 VVSATLPQDVLELTNKFTTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDL--YD 256

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+  F++G  ++++ 
Sbjct: 257 TLTITQAVIFCNSRRKVDWLAEKMREANFTVTSMHGEMPQKERDAIMQEFRQGHSRVLLC 316

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  +D++ +  IE
Sbjct: 317 TDIWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTNDDVRILRDIE 376

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     +D +  ++  +
Sbjct: 377 QYYSTVIDEMPINIGDM 393


>gi|229844936|ref|ZP_04465073.1| hypothetical protein CGSHi6P18H1_04237 [Haemophilus influenzae
           6P18H1]
 gi|229812070|gb|EEP47762.1| hypothetical protein CGSHi6P18H1_04237 [Haemophilus influenzae
           6P18H1]
          Length = 613

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 139/405 (34%), Positives = 229/405 (56%), Gaps = 20/405 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 5   ITFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E + K      +  L GG  ++ Q + L
Sbjct: 65  AQIDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  R  L ++ +  +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 122 KQGAQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+ +P+ +++       E       + +  +  +        
Sbjct: 182 TALFSATMPEPIRRITKRFMNDPQEVKIKV---NNENAPDIDQSCWYVHGVRKNEALLRF 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 239 LEVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 299 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 358

Query: 360 IEKLIEKKVDWLN-------------GDLSSLNPPLEKIDIAQHN 391
           IE L++K ++ +                ++ +   LE  D+ Q+ 
Sbjct: 359 IEHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYR 403


>gi|145635138|ref|ZP_01790843.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
 gi|145267559|gb|EDK07558.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
          Length = 613

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 139/405 (34%), Positives = 229/405 (56%), Gaps = 20/405 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 5   ITFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E + K      +  L GG  ++ Q + L
Sbjct: 65  AQIDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  R  L ++ +  +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 122 KQGAQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+ +P+ +++       E       + +  +  +        
Sbjct: 182 TALFSATMPEPIRRITKRFMNDPQEVKIKV---NNENAPDIDQSCWYVHGVRKNEALLRF 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 239 LEVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 299 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 358

Query: 360 IEKLIEKKVDWLN-------------GDLSSLNPPLEKIDIAQHN 391
           IE L++K ++ +                ++ +   LE  D+ Q+ 
Sbjct: 359 IEHLMKKGINEVELPNHLVLQEYRRKKFVAKITKQLEHHDLEQYR 403


>gi|221200134|ref|ZP_03573177.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD2M]
 gi|221206713|ref|ZP_03579725.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD2]
 gi|221173368|gb|EEE05803.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD2]
 gi|221180373|gb|EEE12777.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD2M]
          Length = 480

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 160/391 (40%), Positives = 232/391 (59%), Gaps = 9/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTFYTEHRSAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAET+            ++     
Sbjct: 181 RRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKI 385
           +  IE+LI++++  + + G     N   E I
Sbjct: 358 LRDIERLIKREIPREVIAGFEPDPNAKPEPI 388


>gi|161523807|ref|YP_001578819.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|189351431|ref|YP_001947059.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
 gi|160341236|gb|ABX14322.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
           ATCC 17616]
 gi|189335453|dbj|BAG44523.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
          Length = 480

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 160/391 (40%), Positives = 232/391 (59%), Gaps = 9/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTFYTEHRSAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAET+            ++     
Sbjct: 181 RRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKI 385
           +  IE+LI++++  + + G     N   E I
Sbjct: 358 LRDIERLIKREIPREVIAGFEPDPNAKPEPI 388


>gi|121719103|ref|XP_001276289.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus clavatus NRRL 1]
 gi|142985525|sp|A1C595|FAL1_ASPCL RecName: Full=ATP-dependent RNA helicase fal1
 gi|119404487|gb|EAW14863.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus clavatus NRRL 1]
          Length = 399

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 203/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L 
Sbjct: 26  TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 86  VIDTA---VRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDY 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 143 GQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P R+ V     T E I+  F+A   +  K   L       
Sbjct: 203 VVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDL--YD 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++++
Sbjct: 261 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIS 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  IE
Sbjct: 321 TDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 381 LYYSTQIDEMPMNVADL 397


>gi|241895833|ref|ZP_04783129.1| DEAD box ATP-dependent RNA helicase SrmB [Weissella
           paramesenteroides ATCC 33313]
 gi|241870876|gb|EER74627.1| DEAD box ATP-dependent RNA helicase SrmB [Weissella
           paramesenteroides ATCC 33313]
          Length = 512

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 147/373 (39%), Positives = 227/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+  ++ A+   GYV+ TPIQ KTIPL +   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLTQDLLTAIEKHGYVEATPIQEKTIPLTMAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++     V+    L++ PTRELA Q  D   K G++ ++ V  + GG     Q   L 
Sbjct: 61  EMIDNENKDVQ---ALVVSPTRELAIQTQDELFKLGRDKHVRVQAVFGGADIRRQINGLN 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR++DH  RG + +++++ LV+DEAD ML+MGF+  I++I   VP  RQT
Sbjct: 118 HGAHIVVGTPGRLIDHIRRGTINLSHVKTLVLDEADEMLNMGFLEDIESILKAVPDERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+ NP+ I++     T + ++  +V            +   + 
Sbjct: 178 LLFSATMPPAIKRIGVQFMTNPEHIQIAAKELTTDLVDQYYVRVRDFEK---FDVLTRIL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L   L  +GF    IHG++ Q+ R ++L  FK   I+++V
Sbjct: 235 DVQQPELAIMFGRTKRRVDELTRGLTLRGFKAAGIHGDLTQQKRTQVLKQFKNREIKILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V +V+NFD+P  +E+Y+HRIGRTGRAG HG + T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTYVYNFDIPQDSESYVHRIGRTGRAGAHGNSVTFVSNSEMDYLKDI 354

Query: 361 EKLIEKKVDWLNG 373
           EKL +K++  L  
Sbjct: 355 EKLTKKRMQPLKP 367


>gi|260945385|ref|XP_002616990.1| hypothetical protein CLUG_02434 [Clavispora lusitaniae ATCC 42720]
 gi|238848844|gb|EEQ38308.1| hypothetical protein CLUG_02434 [Clavispora lusitaniae ATCC 42720]
          Length = 397

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 205/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P+++  +   G+  P+ IQ + I  ++   D    AQ+GTGKTA+F + ML 
Sbjct: 26  TFESMKLKPELLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     VR  + L+L PTRELA Q+ +     G   N+     IGG       KKL +
Sbjct: 86  AIDWN---VRQCQALVLSPTRELAIQIHNVIRNLGTYMNIHTHACIGGKQVGDDLKKLNQ 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+LD   R  L   N+++L++DEAD ++  GF   I  I   +P T Q +
Sbjct: 143 GQHIVSGTPGRVLDVIKRRNLATRNVQMLILDEADELMTKGFKEQIYEIYRHLPSTVQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+T E+ +++  F  +P +I V     T E I+   +    +  K   L       
Sbjct: 203 VVSATLTREVLEITSKFTTDPVKILVKKEDVTLEGIKQYHIQCEKEEWKFDTLCDL--YD 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K  V  L   L K  F+V ++HG++ Q  R  I+++F+ G  +++++
Sbjct: 261 SLTITQAVIFCNTKSKVNWLADQLRKANFAVSSMHGDMKQEERDSIMNDFRTGNSRVLIS 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENY+HRIGR+GR GR G A  L+ K+D+  +  +E
Sbjct: 321 TDVWARGIDVQQVSLVINYDLPLDKENYVHRIGRSGRFGRKGVAINLITKDDVAEMKDLE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
           +  + ++  +  DLSSL
Sbjct: 381 RYYKIRIREMPSDLSSL 397


>gi|148827371|ref|YP_001292124.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG]
 gi|148718613|gb|ABQ99740.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG]
          Length = 613

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 140/405 (34%), Positives = 230/405 (56%), Gaps = 20/405 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 5   ITFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E + K      +  L GG  ++ Q + L
Sbjct: 65  AQIDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 122 KQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+ +P+ +++       E       + +  +  +        
Sbjct: 182 TALFSATMPEPIRRITKRFMNDPQEVKIKV---NNENAPDIDQSCWYVHGVRKNEALLRF 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 239 LEVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 299 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 358

Query: 360 IEKLIEKKVDWLN-------------GDLSSLNPPLEKIDIAQHN 391
           IE L++K ++ +                ++ +   LE  D+ Q+ 
Sbjct: 359 IEHLMKKGINEVELPNHLVLQECRRKKFIAKITKQLEHHDLEQYR 403


>gi|256077147|ref|XP_002574869.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238660085|emb|CAZ31102.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 401

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+ +P+ IQ + I  +++  DV   AQ+GTGKTA+  + +L 
Sbjct: 29  SFDSMCLRDDLLRGIYAYGFERPSAIQQRAIKQIVKGRDVIAQAQSGTGKTATLGISILQ 88

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+      +    L+L PTRELA+Q+       G   N+      GG       +KL+ 
Sbjct: 89  MLDTQLRETQA---LVLSPTRELASQIQKVILALGDYMNVQCHACYGGTNIGEDIRKLDY 145

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    +++ V+DEAD MLD GF   I ++   +P   Q +
Sbjct: 146 GQHVISGTPGRVFDMIRRRSLRTRAVKLFVLDEADEMLDKGFKEQIYDVYRYLPPGTQVV 205

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+ +++  F+ NP RI V     T E I+  FVA   +  K   L       
Sbjct: 206 LLSATMPHEILEMTSKFMTNPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + K  F+V ++HG++ Q+ R +I+ +F+ G  ++++ 
Sbjct: 264 TLTVTQSVIFCNTKRKVAWLTEKMLKNNFTVASMHGDMVQKEREEIMKDFRAGDSRVLIT 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +  IE
Sbjct: 324 TDLWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKTDDIKILRDIE 383

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  ++S L
Sbjct: 384 QYYSTQIDEMPMNVSDL 400


>gi|257064977|ref|YP_003144649.1| DNA/RNA helicase, superfamily II [Slackia heliotrinireducens DSM
           20476]
 gi|256792630|gb|ACV23300.1| DNA/RNA helicase, superfamily II [Slackia heliotrinireducens DSM
           20476]
          Length = 657

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 140/371 (37%), Positives = 204/371 (54%), Gaps = 4/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + GLS   + AV D GY +PTPIQ + IP+VL+  D+   A+TGTGKTA+F LP + 
Sbjct: 8   TFDESGLSATALAAVYDLGYEEPTPIQQQAIPVVLEGRDLIAAAKTGTGKTAAFALPTMD 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +   P  +I+ PTRELA Q+++  E   K  N  V  L+GG+ +  Q KKL  
Sbjct: 68  KLPYAG-KGEGPVMVIVTPTRELAMQISEVCETIAKRTNHRVVTLLGGVSYTPQIKKLRS 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D++I TPGR+LD   + +  ++ +++LV+DEADRMLDMGF P +  I    P  RQTL
Sbjct: 127 GCDIIIATPGRLLDLMRQHEADLDLVQVLVLDEADRMLDMGFWPQVSEIVDATPSERQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+     KV  + L +P+ I     S   +T +           ++   L      
Sbjct: 187 LFSATIDRSQDKVMFSLLNHPEII---EISHRGDTADLVDQYIIWTGRREKPALLNAFIR 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      I+F   K    N    L K G    AIH +  Q  R + L  F+EG   ++VA
Sbjct: 244 EKGGFRVIVFTKTKGGADNCTRRLCKIGIGAEAIHADRSQAQRQRALERFREGKTHVIVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+P+V +V N+D+P   E+Y+HRIGRTGRAG  G A + V  +    + +I+
Sbjct: 304 TDVLARGIDVPEVDYVVNYDLPMMPEDYVHRIGRTGRAGVAGYAVSFVTPDTKNLLRSIQ 363

Query: 362 KLIEKKVDWLN 372
           K I + +  + 
Sbjct: 364 KFIGEDIQVME 374


>gi|115437508|ref|XP_001217828.1| eukaryotic initiation factor 4A-12 [Aspergillus terreus NIH2624]
 gi|121734188|sp|Q0CAS8|FAL1_ASPTN RecName: Full=ATP-dependent RNA helicase fal1
 gi|114188643|gb|EAU30343.1| eukaryotic initiation factor 4A-12 [Aspergillus terreus NIH2624]
          Length = 399

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 118/377 (31%), Positives = 201/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L 
Sbjct: 26  TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++      +    L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 86  VIDTVVRESQA---LVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDY 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 143 GQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P R+ V     T E I+  F+A   +  K   L       
Sbjct: 203 VVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDL--YD 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++++
Sbjct: 261 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIS 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  IE
Sbjct: 321 TDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 381 LYYSTQIDEMPMNVADL 397


>gi|331006491|ref|ZP_08329791.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC1989]
 gi|330419691|gb|EGG94057.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC1989]
          Length = 573

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 156/422 (36%), Positives = 245/422 (58%), Gaps = 10/422 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L   ++  +++ GY  P+PIQ  +IP++ +  D+ G AQTGTGKTA+F LP+L+
Sbjct: 11  SFSELNLPEAILKTLVELGYETPSPIQAASIPIIQEGRDLLGQAQTGTGKTAAFALPLLS 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++      + P+ L+L PTRELA QVA+ F+ Y ++ + TV  + GG  ++ Q ++L+R
Sbjct: 71  KIDPT---KKHPQLLVLAPTRELAIQVAEAFQTYSRHMSCTVLPIYGGQSYDNQLRQLKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH  R  L ++ +E LV+DEAD ML MGFI  ++ I    P +RQ  
Sbjct: 128 GTQIIVGTPGRVMDHIRRKTLKLDQLEALVLDEADEMLRMGFIDDVEWILEHTPKSRQIA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++KV++ +L NPK I++ T +STA TI   F                 ++ 
Sbjct: 188 LFSATMPKEIKKVADKYLVNPKHIKIETKTSTATTIRQRFSIVNRNQKLDAFTRILEVED 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D +   I+F   K   + L   L  +G S  A++G+I Q  R  I+   K GT+ +++A
Sbjct: 248 FDGV---IVFVRTKVATLELAEKLSARGHSCAALNGDIPQNQRENIVEKLKRGTLDILIA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   V   +   + AIE
Sbjct: 305 TDVVARGLDVKRISHVINYDIPLDTESYVHRIGRTGRAGRSGEAILFVTSRERHLLRAIE 364

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           +     V+    D+ S +   +K   A+    R N+ I QK  G      N + Q++  P
Sbjct: 365 RDTNSVVE--PMDVPSASDVNQK--RAEVFKKRINDAITQKDLGIYHDIINQTIQENDHP 420

Query: 422 LK 423
           ++
Sbjct: 421 ME 422


>gi|307130576|ref|YP_003882592.1| putative ATP-dependent RNA helicase [Dickeya dadantii 3937]
 gi|306528105|gb|ADM98035.1| Putative ATP-dependent RNA helicase [Dickeya dadantii 3937]
          Length = 454

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 165/441 (37%), Positives = 256/441 (58%), Gaps = 13/441 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY +PTP+Q + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFESLGLSADILRAVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L    ++    R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    Q  
Sbjct: 61  QLLNGRPSQAKGRRPVRALILTPTRELAAQIGENVQAYSKYLRLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+LI TPGR+LD  ++  + ++++EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILIATPGRLLDLEHQNAVDLSHVEILVLDEADRMLDMGFIHDIRRVLAKLPPK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE+++++   L NP  +EV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDEIKELAGKLLTNPASVEVVRRNTPSELV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L+NFK+G I+
Sbjct: 238 HLIGKHDWRQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALANFKDGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNP-PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
             IE+L+++++  +  +++   P P  K +  Q+                DR +   +S+
Sbjct: 358 RDIERLLKREIPRM--EIAGYEPDPTIKAEPIQNGRQGGRGGRGGAPRQGDRPQGERASR 415

Query: 417 ----KSHIPLKESEKISKLQQ 433
               + H P ++       Q+
Sbjct: 416 PQGDRPHQPRRDGAARPAGQR 436


>gi|294139294|ref|YP_003555272.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293325763|dbj|BAJ00494.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 478

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 164/400 (41%), Positives = 244/400 (61%), Gaps = 4/400 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV   GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTSLGLSAPILKAVASKGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +G   + +  R L+L PTRELAAQVA++ E YGK   L  A++ GG+    Q  KL
Sbjct: 61  ELLSRGNRAQAKKVRALVLTPTRELAAQVAESVETYGKYLPLKSAVIFGGVGIGPQISKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD +N+G +  N +E+L++DEADRMLDMGFI  I+ I  ++P  RQ
Sbjct: 121 GKGVDILVATPGRLLDLYNQGAVNFNQLEVLILDEADRMLDMGFIHDIKKILRVLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +D+++K+++  + NP  I V   ++TA+++E           K+       L
Sbjct: 181 NLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATAKSVEQYIYMVDQ---KQKTAALIHL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  K  ++F   K     +  +LE    +  AIHGN  Q +R K L+NFK G ++++
Sbjct: 238 IKQNDWKQVLVFSRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKALANFKNGAVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + +V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV+ ++ K +  
Sbjct: 298 VATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSGDESKLLRD 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           IE+LI++ +     +       + + D+    H +   P 
Sbjct: 358 IERLIKQNIPRKEVEGFVPTQIVAETDLNDSKHGQNRGPR 397


>gi|291616785|ref|YP_003519527.1| RhlE [Pantoea ananatis LMG 20103]
 gi|291151815|gb|ADD76399.1| RhlE [Pantoea ananatis LMG 20103]
          Length = 449

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 166/452 (36%), Positives = 251/452 (55%), Gaps = 15/452 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLSGRDLLASAQTGTGKTAGFTLPLL 60

Query: 61  TI--LEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                  G  R R P    IL PTRELAAQV +N  +Y K   L   ++ GG+    Q  
Sbjct: 61  QKLSANTGAVRGRRPVRALILTPTRELAAQVGENVVEYSKYLPLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ +E+LV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLVHQNAVDLSQVEVLVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++E  L NP+++EV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTASEQV---SQQVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK G I+
Sbjct: 238 QLIGEGNWQQVLVFTRTKHGANHLAEQLGKDGITAAAIHGNKSQGARTRALADFKSGAIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN AE+Y+HRIGRTGRA   G A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGVALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF-------DR 408
             IE+L+++++  L   G     +   E I   + +   +     Q   G        D+
Sbjct: 358 RDIERLLKREIPRLAVPGYEPDPSIKAEPIVNGRQSQQPRGRARSQGGQGAGAARPQGDK 417

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDA 440
           R +      +  P  +     +     +  +A
Sbjct: 418 RSQPRRQGPAAGPSDKPAARPRRPASKRSGNA 449


>gi|229823669|ref|ZP_04449738.1| hypothetical protein GCWU000282_00970 [Catonella morbi ATCC 51271]
 gi|229786906|gb|EEP23020.1| hypothetical protein GCWU000282_00970 [Catonella morbi ATCC 51271]
          Length = 518

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 144/409 (35%), Positives = 227/409 (55%), Gaps = 20/409 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ ++ D G+ +PTPIQ + +P+ L+  D+ G AQTGTGKTA+F LPML
Sbjct: 1   MKFTELNLIQPLLDSLADMGFEEPTPIQQQAVPVALEGQDLIGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN-KKL 119
             L+K ++ ++    L++ PTRELA QV +   + GK     + ++ GG     Q     
Sbjct: 61  NKLDKNQSAIQ---GLVVAPTRELAIQVQEELYRLGKYQRARIYVVYGGSSIGKQIEWIK 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +++ TPGRILD   R  L + +++ LV+DEAD ML+MGFI  ++ I +  P +RQ
Sbjct: 118 RNQPQIVVGTPGRILDLMRRKALSLKHLKTLVLDEADEMLNMGFIEDVKEIVATTPASRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E++ +++ FL+ P  +++     TA+ I             +   +   L
Sbjct: 178 TLLFSATMPPEIRSLADQFLKEPAHVKIEAKQMTADLI---EQFFIKCRDDEKFDIFTRL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    I+FC  KK V  +   L  +G++   IHG+I Q+ R  +++ F++G ++L+
Sbjct: 235 LDVQMPTQAIVFCRTKKRVDEVARGLSLRGYNAELIHGDIPQQKRTSVINAFRQGQVELL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG  G + T V   ++ ++  
Sbjct: 295 VATDVAARGLDISGVTHVYNYDISQDPESYVHRIGRTGRAGNEGMSITFVTPAEMSYLRV 354

Query: 360 IEKLIEKKVDWLNGD-------------LSSLNPPLEKIDIAQHNHARK 395
           IE L  K++  +                +  LN  LE  D  +H +  K
Sbjct: 355 IEDLTRKRMQPMKPPTLKEAQAGQVQSLIDQLNETLEAGDADEHRNTAK 403


>gi|218676896|ref|YP_002395715.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218325164|emb|CAV27059.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 689

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 146/463 (31%), Positives = 238/463 (51%), Gaps = 35/463 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L L+  ++ A+   G+V PTPIQ   IPL+L+  D  G AQTGTGKTA+F LP+L
Sbjct: 34  IQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 93

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             +   + +   P+ +I+ PTRELA QVA   +  G++      L I  G     Q + L
Sbjct: 94  NKINLNQHK---PQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQMRAL 150

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR+ D   R +L ++     V+DEAD ML MGF+  +  I    P + Q
Sbjct: 151 SRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQ 210

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++ + + +L+NP +++V   + T + +   +         +        
Sbjct: 211 RVLFSATMPPMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQNYWVVKGVEKDEAMSRLLET 270

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 271 EET---DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 327

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 328 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 387

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE++ + +++ +           ++ ++A    A+    +               ++K  
Sbjct: 388 IERVTKSQMEEIQ--------LPQRDEVAAARVAKLGAELE--------------TEKES 425

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
             L+    +    Q+  E DA +L       A +L + +GK  
Sbjct: 426 KALENFAGLISTLQESLEVDAATLA------AMLLKRQQGKSP 462


>gi|86145756|ref|ZP_01064085.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222]
 gi|85836455|gb|EAQ54584.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222]
          Length = 665

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 146/463 (31%), Positives = 238/463 (51%), Gaps = 35/463 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L L+  ++ A+   G+V PTPIQ   IPL+L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             +   + +   P+ +I+ PTRELA QVA   +  G++      L I  G     Q + L
Sbjct: 66  NKINLNQHK---PQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR+ D   R +L ++     V+DEAD ML MGF+  +  I    P + Q
Sbjct: 123 SRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++ + + +L+NP +++V   + T + +   +         +        
Sbjct: 183 RVLFSATMPPMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQNYWVVKGVEKDEAMSRLLET 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 243 EET---DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE++ + +++ +           ++ ++A    A+    +               ++K  
Sbjct: 360 IERVTKSQMEEIQ--------LPQRDEVAAARVAKLGAELE--------------TEKES 397

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
             L+    +    Q+  E DA +L       A +L + +GK  
Sbjct: 398 KALENFAGLISTLQESLEVDAATLA------AMLLKRQQGKSP 434


>gi|110598397|ref|ZP_01386670.1| Helicase-like:DbpA, RNA-binding:DEAD/DEAH box helicase-like
           [Chlorobium ferrooxidans DSM 13031]
 gi|110340006|gb|EAT58508.1| Helicase-like:DbpA, RNA-binding:DEAD/DEAH box helicase-like
           [Chlorobium ferrooxidans DSM 13031]
          Length = 598

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 139/372 (37%), Positives = 221/372 (59%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  L L+  ++ A+ + GY  PTPIQ +TIPL+L+  DV G AQTGTGKTA+F LP+L+
Sbjct: 10  DFRSLQLAEPLMQALEEVGYENPTPIQAETIPLLLEGRDVLGQAQTGTGKTAAFALPVLS 69

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            +    A    P+ L+L PTRELA QVA+ F++Y  +      + I  G  +  Q + L+
Sbjct: 70  NIRLALAE---PQALVLAPTRELAIQVAEAFQRYAVHLKGFHVVPIYGGQDYGIQLRMLK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG L +++++ LV+DEAD ML MGFI  ++ I    P  RQ 
Sbjct: 127 RGVHVVVGTPGRVMDHMRRGSLNLDSLQCLVLDEADEMLRMGFIDDVEWILDQTPKDRQV 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++++++ +L NP ++ + T ++T ETI   +      +      +   + 
Sbjct: 187 ALFSATMPSAIRRIAQKYLNNPAQVTIQTKTTTVETIRQRYWIVGGSHK---LDILTRIL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     +IF   K   + L   L+ +G+   A++G++ Q  R + +   K G + +++
Sbjct: 244 EVEPFDGILIFVRTKTMTIELAEKLQARGYGAAALNGDMAQNQRERTVDQLKNGALSIVI 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  +   + AI
Sbjct: 304 ATDVAARGLDVERISHVINYDIPSDTESYVHRIGRTGRAGRTGDAILFVSPREKNMLYAI 363

Query: 361 EKLIEKKVDWLN 372
           EK    +++ + 
Sbjct: 364 EKATHSRIELME 375


>gi|260582883|ref|ZP_05850668.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
 gi|260094096|gb|EEW77999.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
          Length = 613

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 140/405 (34%), Positives = 230/405 (56%), Gaps = 20/405 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 5   ITFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E + K      +  L GG  ++ Q + L
Sbjct: 65  AQIDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 122 KQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+ +P+ +++       E       + +  +  +        
Sbjct: 182 TALFSATMPEPIRRITKRFMNDPQEVKIKV---NNENAPDIDQSCWYVHGVRKNEALLRF 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 239 LEVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 299 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 358

Query: 360 IEKLIEKKVDWLN-------------GDLSSLNPPLEKIDIAQHN 391
           IE L++K ++ +                ++ +   LE  D+ Q+ 
Sbjct: 359 IEHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYR 403


>gi|145628549|ref|ZP_01784349.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
 gi|145639856|ref|ZP_01795457.1| preprotein translocase subunit SecF [Haemophilus influenzae PittII]
 gi|144979019|gb|EDJ88705.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
 gi|145271074|gb|EDK10990.1| preprotein translocase subunit SecF [Haemophilus influenzae PittII]
          Length = 613

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 140/405 (34%), Positives = 230/405 (56%), Gaps = 20/405 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 5   ITFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E + K      +  L GG  ++ Q + L
Sbjct: 65  AQIDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 122 KQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+ +P+ +++       E       + +  +  +        
Sbjct: 182 TALFSATMPEPIRRITKRFMNDPQEVKIKV---NNENAPDIDQSCWYVHGVRKNEALLRF 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 239 LEVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 299 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 358

Query: 360 IEKLIEKKVDWLN-------------GDLSSLNPPLEKIDIAQHN 391
           IE L++K ++ +                ++ +   LE  D+ Q+ 
Sbjct: 359 IEHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYR 403


>gi|309750350|gb|ADO80334.1| ATP-dependent RNA helicase DeaD [Haemophilus influenzae R2866]
          Length = 613

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 140/405 (34%), Positives = 230/405 (56%), Gaps = 20/405 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 5   ITFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E + K      +  L GG  ++ Q + L
Sbjct: 65  AQIDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 122 KQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+ +P+ +++       E       + +  +  +        
Sbjct: 182 TALFSATMPEPIRRITKRFMNDPQEVKIKV---NNENAPDIDQSCWYVHGVRKNEALLRF 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 239 LEVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 299 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 358

Query: 360 IEKLIEKKVDWLN-------------GDLSSLNPPLEKIDIAQHN 391
           IE L++K ++ +                ++ +   LE  D+ Q+ 
Sbjct: 359 IEHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYR 403


>gi|328849915|gb|EGF99087.1| hypothetical protein MELLADRAFT_50777 [Melampsora larici-populina
           98AG31]
          Length = 395

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 203/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL   ++  +    + KP+ IQ + I  + +  DV   AQ+GTGKTA+F + +L 
Sbjct: 23  TFDSLGLKDDLLRGIYAYNFEKPSAIQQRAILPITKGRDVIAQAQSGTGKTATFSISILQ 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++      +    L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 83  SIDTQIRETQA---LVLSPTRELATQIQSVILALGDYMNIQCHACIGGTSIGEDIRKLDH 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   NI++LV+DEAD +L++GF   I ++   +P   Q +
Sbjct: 140 GQHVVSGTPGRVYDMIRRRNLRTRNIKMLVLDEADELLNLGFKDQIYDVYRYLPPQTQVV 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 200 VLSATLPYDVLEMTTKFMTDPIRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL--YD 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG++ Q+ R  I+  F+ GT ++++ 
Sbjct: 258 TLTITQAVIFCNTRRKVDWLTEKMREANFTVSSMHGDMPQKERDTIMGEFRNGTSRVLIT 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 318 TDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIE 377

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  ++  +
Sbjct: 378 QYYSTQIDEMPVNIGEV 394


>gi|327485805|gb|AEA80211.1| Cold-shock DEAD-box protein A [Vibrio cholerae LMA3894-4]
          Length = 644

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 134/373 (35%), Positives = 210/373 (56%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IP++L   D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLDGRDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L   + +   P+ +++ PTRELA QVA   +  G+N      L I  G     Q + L
Sbjct: 66  NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     ++DEAD ML MGF+  +  I    P + Q
Sbjct: 123 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++++ E FL+NP+ ++V   + T   +E  +         +        
Sbjct: 183 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLET 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 243 EET---DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HV+N+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVDWLN 372
           IE++    ++ + 
Sbjct: 360 IERVTRSSMEEIQ 372


>gi|239626754|ref|ZP_04669785.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239516900|gb|EEQ56766.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
           bacterium 1_7_47FAA]
          Length = 572

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 135/384 (35%), Positives = 223/384 (58%), Gaps = 9/384 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L L  +++ A+ + G+ + +PIQ + IP+ ++  D+ G AQTGTGKTA+F +P+L
Sbjct: 4   VKFDELQLDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++    +V+  + +IL PTRELA QVA+   +  K  + T  L I  G     Q + L
Sbjct: 64  QKVDP---KVKKLQAIILLPTRELAIQVAEEMRRLAKFMHGTKVLPIYGGQDIVKQIRSL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  +++ TPGR++DH  R  + M+++  +V+DEAD ML+MGF+  ++ I S +P  RQ
Sbjct: 121 KDGTQIVVGTPGRVMDHMRRKTVKMDHVHTVVLDEADEMLNMGFLEDMETILSQLPEERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSATM   +  ++  F  +P  + V     T   +   +     +   +        
Sbjct: 181 TLMFSATMPQAIADIARKFQDDPVTVRVIKKELTVPKVTQYYYEVKPKNKVEVMCRLL-- 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  I+FCN K+ V  L  +L+ +G+    +HG++ Q  R +++ +F+ G   ++
Sbjct: 239 -DMYAPKLSIVFCNTKRQVDELVQALQGRGYFAEGLHGDLKQVQRDRVMGSFRNGRTDIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  VFN+DVP   E Y+HRIGRTGRAGR GKAF+LV  +++  +  
Sbjct: 298 VATDVAARGIDVGDVEAVFNYDVPQDDEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRD 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE 383
           I++  + K+  +   + SLN   E
Sbjct: 358 IQRYCKTKI--IPQAIPSLNDITE 379


>gi|254505608|ref|ZP_05117754.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16]
 gi|219551261|gb|EED28240.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16]
          Length = 647

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 157/463 (33%), Positives = 247/463 (53%), Gaps = 35/463 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+   G+V PTPIQ   IP +L   D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L+ G+ +   P+ ++L PTRELA QVA   +  GKN      L I  G     Q + L
Sbjct: 66  NKLDLGQRK---PQAIVLAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D  NR +L ++ +   V+DEAD ML+MGF+  +  I    P + Q
Sbjct: 123 KNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   L+ + E FL++P+ I+V   + T + +E  F         +        
Sbjct: 183 RVLFSATMPPMLKSIVERFLRDPETIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLET 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 243 EET---DASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    ++ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRT 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE++ +  ++ +        P  +K  +A+   A+    +               ++K H
Sbjct: 360 IERVTKSSMEEIQ------LPHRDK--VAESRLAKLGAELE--------------TEKEH 397

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
             L++  ++ +  Q+  E DA +L       A +L + +GK  
Sbjct: 398 KALEKFSELVEKLQESLELDAATLA------AILLKRQQGKRP 434


>gi|124505577|ref|XP_001351530.1| eukaryotic initiation factor, putative [Plasmodium falciparum 3D7]
 gi|23498289|emb|CAD49261.1| eukaryotic initiation factor, putative [Plasmodium falciparum 3D7]
 gi|117956286|gb|ABK58711.1| eIF4A-like protein [Plasmodium falciparum]
          Length = 390

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 191/377 (50%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++G+   ++  +   G+ KP+ IQ + I  +L   DV   +Q+GTGKT  F +  L 
Sbjct: 18  SFENIGIDEGLLRGIYAYGFEKPSAIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGALN 77

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + +     ++    IL PTRELA Q            ++T+   IGG       K L  
Sbjct: 78  CVNRNLNETQVI---ILSPTRELAEQTQKVCLALADYIHVTIYCCIGGKKMSDDIKALNN 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGRI    N   L    I+ LVIDEAD ML+ GF   + +I   +    Q +
Sbjct: 135 GVHVISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPNTQII 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+  P +I V     T E I+  FV+   +  K        L  
Sbjct: 195 LSSATLPQEVLEITNKFMHKPVKILVKRDELTLEGIKQFFVSIEKEQWKYET--LADLYE 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   ++FCN +  V  L   + +  F+VC +H  + Q  R  I+  F++   +++++
Sbjct: 253 SLTITQAVVFCNTQMKVDWLTKKMLESNFTVCKMHAGMSQSERDDIMLKFRQCKFRVLIS 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+  RGLD+ +V  V N+D+PN  E+YIHRIGR+GR GR G A   V  +DIK +  IE
Sbjct: 313 TDIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIE 372

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 373 QYYSTQIDEMPMNITEL 389


>gi|75674512|ref|YP_316933.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
 gi|74419382|gb|ABA03581.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
          Length = 476

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 173/466 (37%), Positives = 251/466 (53%), Gaps = 19/466 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL+  +  A+ +  Y+ PTPIQ +TIP+ L   D+ GIAQTGTGKTA+F LP+L 
Sbjct: 9   SFQDFGLADPISRALAEENYLTPTPIQAQTIPIALTGRDLVGIAQTGTGKTAAFALPILH 68

Query: 62  ILEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L + R + +     +L   PTREL+ Q+ +NF  YG++  LT AL IGG+P   Q + +
Sbjct: 69  RLLQNRIKPQPKSCRVLVLSPTRELSGQILENFNAYGRHLRLTSALAIGGVPMGRQVRAV 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G +V++ TPGR+LD      L +  +E LV+DEADRMLDMGFI  I+ + + +P  RQ
Sbjct: 129 MHGVEVMVATPGRLLDLVQSNGLKLGQVEFLVLDEADRMLDMGFIHDIRKVVAKLPAKRQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM  ++ +++   L++P R+ V   SST + I    +          A     L
Sbjct: 189 TLFFSATMPKDIAELANQMLRDPARVAVTPVSSTVDRITQRIIQVDHAGK---AAFLAQL 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+ +   +IF   K     +  SL K G    AIHGN  Q  R ++L+ F+ G I+ +
Sbjct: 246 LKQEPVNRALIFTRTKHGADKVVKSLAKSGIRSNAIHGNKSQNHRERVLAEFRAGEIRTL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           VA+D+AARG+D+  + HV NFD+PN  E Y+HRIGRT RAG  G A +LVA  E++ ++ 
Sbjct: 306 VATDIAARGIDVDGISHVVNFDLPNVPETYVHRIGRTARAGTDGAAISLVAGAEEMAYLR 365

Query: 359 AIEKLIEKKVDWLN----GDLSSLNPPLEKI--DIAQHNHARKNNPIPQKSTGFDRRKKN 412
            IEKLI   +   +    G   +   P +      A H HA +            RR K 
Sbjct: 366 DIEKLIRVVLPREDRRTSGQREAAPAPQQNRGGSPAPHGHAARAGDASSGKGSRRRRSKK 425

Query: 413 YSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
            + Q S  P    ++ S+         +   G +G   AF+  K+R
Sbjct: 426 GTPQTSRRPESGRQETSRSA-----PGSKPGGMQG--VAFLHRKSR 464


>gi|34496458|ref|NP_900673.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
 gi|34102311|gb|AAQ58677.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 441

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 165/462 (35%), Positives = 252/462 (54%), Gaps = 33/462 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLSP+++ A+ + GY +PTPIQ K IPLVL   D+   AQTGTGKTA+F+LP+L
Sbjct: 1   MLFSELGLSPEILRAIDEQGYSQPTPIQEKAIPLVLSGRDLLAAAQTGTGKTAAFMLPIL 60

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L+K       P        +L PTRELA Q+  N + Y K   L    + GG+  + Q
Sbjct: 61  ERLKKFANTSVSPAMHPIRALVLSPTRELADQIGVNVQTYTKYLPLRATTVFGGVNMDPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L RG ++LI TPGR+LDH  +  + +N +E+LV+DE DRMLDMGFI  I+ I  ++P
Sbjct: 121 TQELRRGVEILIATPGRLLDHIQQKTVQLNKVEVLVLDEGDRMLDMGFIQDIRKIMGMLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT   E+++++ +F+  P+ +EV   ++T + +E           ++    
Sbjct: 181 KERQTLLFSATFAPEIKRLAADFMHAPQTVEVARQNATNDQVEQLVFQVDNFKKRQL--- 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L     M   I+FC  K +   L   L++ G    AIHG+  Q +R++ L+ FKEG 
Sbjct: 238 LAHLIRSREMSQVIVFCKTKISADQLARDLKRDGLDAEAIHGDKTQGARLETLAGFKEGK 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGLDI ++ +V NF++P   E+Y+HRIGRTGRAG  G A +L+  ++ +
Sbjct: 298 LRVLVATDVAARGLDISELPYVVNFELPTSPEDYVHRIGRTGRAGAKGIAISLMCPDESR 357

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
             +AIEKL ++ +      +    P            +  +  +P  S G          
Sbjct: 358 QHEAIEKLTKQTLT--PQSVDGFWPSWLPRPKPAREPSSASPSMPALSAGKSE------G 409

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
            K   P + S K  +                  +PA +LP  
Sbjct: 410 LKQARPGRRSRKAKR-----------------EIPALLLPPR 434


>gi|218131071|ref|ZP_03459875.1| hypothetical protein BACEGG_02675 [Bacteroides eggerthii DSM 20697]
 gi|217986775|gb|EEC53108.1| hypothetical protein BACEGG_02675 [Bacteroides eggerthii DSM 20697]
          Length = 428

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 142/438 (32%), Positives = 241/438 (55%), Gaps = 23/438 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ ++IP++L+  D+  +AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELKLNDNVLEALDAMRFDECTPIQEQSIPVILEGRDLIAVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
             L +G         +++ PTRELA Q+    E +     ++   + GG     FE Q +
Sbjct: 61  NKLSEGGHPEDSINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++++ L NP  +++       +       A Y  Y  +   + +
Sbjct: 181 RQTIMFSATMPAKIQQLAKSILNNPAEVKLAVSKPAEKI----VQAAYVCYENQKLGIIR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L ++ T +  IIF + K  V  +  +L++   +V  +H +++Q  R +++  FK G I 
Sbjct: 237 SLFAEQTPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V +++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-------- 409
             IE  +EK++  +        P  E++  A     R N+   +   G  RR        
Sbjct: 357 KGIENFLEKEIYKI--------PVPEELGEAPEYKPRSNDGRKRSYKGGGRRNAGSGKGG 408

Query: 410 KKNYSSQKSHIPLKESEK 427
            +N S ++   P   ++K
Sbjct: 409 NRNNSRRREGRPSSGTKK 426


>gi|119499061|ref|XP_001266288.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Neosartorya fischeri NRRL 181]
 gi|142985577|sp|A1D071|FAL1_NEOFI RecName: Full=ATP-dependent RNA helicase fal1
 gi|119414452|gb|EAW24391.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Neosartorya fischeri NRRL 181]
          Length = 399

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 203/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L 
Sbjct: 26  TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 86  VIDTV---VRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDY 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 143 GQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P R+ V     T E I+  F+A   +  K   L       
Sbjct: 203 VVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDL--YD 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++++
Sbjct: 261 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIS 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  IE
Sbjct: 321 TDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 381 LYYSTQIDEMPMNVADL 397


>gi|238897524|ref|YP_002923203.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           protein [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465281|gb|ACQ67055.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           protein [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 414

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 164/418 (39%), Positives = 244/418 (58%), Gaps = 9/418 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV +  Y  PTPIQ + IPL+L + D+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFHSLGLNADILRAVSEHNYSAPTPIQRQAIPLILAKRDLMASAQTGTGKTAAFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L +  A V   R  R LIL PTRELAAQ+A N   Y +   L    + GG+    Q  
Sbjct: 61  QLLSQNTALVKGRRQIRALILTPTRELAAQIAQNVSDYSQYLQLRSLAVFGGVSINPQTM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+LI TPGR+LD  ++  L ++ IEILV+DEADRMLDMGFI  I+ I + +P  
Sbjct: 121 KLRGGVDILIATPGRLLDLEHQNALALSQIEILVLDEADRMLDMGFIHDIRRILAKLPKK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+LLFSAT ++E++ +S   L +P  +EV   ++TA+ I            +       
Sbjct: 181 RQSLLFSATFSNEIKSLSTKLLTHPAFVEVAPCNTTAQQISQYVHFVDKNRKRAL---LS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FKEG I 
Sbjct: 238 HMIGRGNWQQVLVFNRTKHGANHLSEQLNKDGITAAAIHGNKSQGARTRALADFKEGKIT 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + +V N+D+P+  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPYVVNYDLPHIPEDYVHRIGRTGRAQHAGEAISLVCVDEDKLL 357

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
             IE+L+++++  +  +G    L    E I   + N  ++         G + ++KN+
Sbjct: 358 KDIERLLKREIPRMAVSGYEPDLRIKAEPIQQRRQNRGKREGRQSVNRIG-NTKEKNH 414


>gi|145481077|ref|XP_001426561.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393636|emb|CAK59163.1| unnamed protein product [Paramecium tetraurelia]
          Length = 395

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L  +++  +   G+ KP+ +Q + I  V+Q  DV   +Q+GTGKTA F L  L+
Sbjct: 23  TFESMSLREELLRGIYAFGFNKPSAVQQRAIVPVIQGRDVIVQSQSGTGKTAVFSLSALS 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++        P+ LIL  TRELA Q A      G   N+++   IGG   +    KL+ 
Sbjct: 83  MIDLSIRE---PQVLILSNTRELAEQSAKVAMALGDFLNVSIHACIGGHSIQDDISKLQH 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R +L + ++++L++DEAD ML  GF   + +I   +P T Q +
Sbjct: 140 GVQIVSGTPGRVFDMIQRKELRVRHLKMLILDEADEMLTKGFKQQVYDIYRYLPPTTQNV 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  E+  +++ F+ NP +I V     T E I+  F+    +  K   L       
Sbjct: 200 VVSATLPQEILDMTDKFMNNPLKILVKRDELTLEGIKQFFIQVDKEEWKFDTLCDL--YD 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFC+       L + + +  F+V  ++G + Q+ R KI++ F++G  ++++A
Sbjct: 258 TLTITQAVIFCSTINKCEWLANKMREHEFTVVQMNGKMSQKERDKIMAEFRQGNKRVLIA 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+  RGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V +ED++ +  IE
Sbjct: 318 TDVWGRGLDVQQVSLVINYDLPNSRELYIHRIGRSGRFGRKGVAINFVKQEDVRLLRDIE 377

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 378 QYYSTQIDEMPMNVTDL 394


>gi|328768329|gb|EGF78376.1| eIF4AIII protein [Batrachochytrium dendrobatidis JAM81]
          Length = 445

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 123/373 (32%), Positives = 199/373 (53%), Gaps = 5/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +    + KP+ IQ + I  +L+  DV   AQ+GTGKTA+F + +L 
Sbjct: 41  SFDQMGLKEDLLRGIFAYNFEKPSAIQQRAIAPILKGRDVIAQAQSGTGKTATFSISVLQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  R + +    LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 101 TIDTTRRQTQA---LILSPTRELATQIQSVVLALGDYMNVQCHACIGGTSIGEDIRKLDH 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++L++DEAD ML  GF   I ++   +P + Q +
Sbjct: 158 GQHVVSGTPGRVFDMIKRRNLQTRDIKMLILDEADEMLSKGFKEQIYDVYRYLPPSTQVV 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P R+ V     T E I+  FVA   +  K   L       
Sbjct: 218 ILSATLPHDVLDMTSKFMTDPVRVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL--YD 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V A+HG + Q+ R  I+  F+ G  ++++ 
Sbjct: 276 TLTITQAVIFCNTRRKVDWLTEKMREANFTVAAMHGEMPQKERDAIMQEFRSGASRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  +D+  +  IE
Sbjct: 336 TDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVKNDDVNILRDIE 395

Query: 362 KLIEKKVDWLNGD 374
           +    ++D +  +
Sbjct: 396 QYYSTQIDEMPMN 408


>gi|148244296|ref|YP_001218990.1| ATP-dependent RNA helicase RhlE [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326123|dbj|BAF61266.1| ATP-dependent RNA helicase RhlE [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 422

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 160/429 (37%), Positives = 246/429 (57%), Gaps = 11/429 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F+ LGLS  ++ A+   GY +P+PIQ ++IP +L   DV   AQTGTGKTA F LP+ 
Sbjct: 1   MSFSKLGLSDSILKAIEQKGYSEPSPIQNQSIPAILNGKDVMAAAQTGTGKTACFALPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K   +    RTLIL PTRELA QV+D+   YGK   L  +++ GG+    Q ++L
Sbjct: 61  EILSKKKPTKSNQVRTLILTPTRELAIQVSDSVTTYGKYLPLKSSVVFGGVKINPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD +++  +  + +EI+V DEADRMLDMGFI  I+ I  ++P  +Q
Sbjct: 121 CSGVDILVATPGRLLDLYSQNSVKFDMLEIVVFDEADRMLDMGFINDIKRILKILPSKKQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT ++++  ++++ + NP  I V   +ST + I+                     
Sbjct: 181 TLMFSATFSNKILTLAKSLVNNPVEISVTPRNSTVKAIKQWIHPVDKSKKHALLTHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      ++F   K     + + LEK+     AIH N  Q +R + L +FK   + ++
Sbjct: 238 IQEHNWHQVLVFSRTKYGANRIVNQLEKKKIRATAIHSNKSQGARTRALLDFKNHEVNVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG++I  + HV NFD+P   E+Y+HRIGRTGRAG  G+A +LV+ ++ K +  
Sbjct: 298 VATDIAARGIEINQLPHVINFDLPYVPEDYVHRIGRTGRAGSKGEAISLVSADEAKQLFD 357

Query: 360 IEKLIEKKVDW--LNGDLSSLNPPLE-KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +E LI+ K+D   + G +   N P   K  ++  N   KN+    KS    R  KN S +
Sbjct: 358 VECLIQNKLDRVMVEGFVPDHNLPESGKKLLSPKNRNFKNS----KSRNRLRYGKNSSFK 413

Query: 417 KSHIPLKES 425
           K ++ +K S
Sbjct: 414 KINLTMKNS 422


>gi|332662165|ref|YP_004444953.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332330979|gb|AEE48080.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 451

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 140/432 (32%), Positives = 222/432 (51%), Gaps = 13/432 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F + GL P ++  V    Y   TPIQ K IP++L+  D+ GIAQTGTGKTA+F+LP+L
Sbjct: 1   MNFTEFGLHPDLLDGVDAMNYKTATPIQEKAIPIILEGKDLIGIAQTGTGKTAAFILPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + +        +TL++ PTRELA Q+    E Y     ++   + GG   +   ++  
Sbjct: 61  NEIIESG-EANFIQTLVIVPTRELAVQIDQVIEAYSYFTGVSSIAIYGGGDGKEFAQEKN 119

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
               G D++I TPGR++ H N G +  + +  LV+DEADRM+DMGF P +  I   +P  
Sbjct: 120 ALVSGVDIVIATPGRLISHLNMGYVNFSKLRFLVLDEADRMMDMGFQPDLMRIIGKIPQK 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM + + K++            +   + ++  E      Y  Y ++   L  
Sbjct: 180 RQTLLFSATMPESVMKLARQLTH----NAESVSIALSKPAEGVTQRAYVVYEEQKLQLVT 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L      +  ++FC+ K +V +L   L ++  SV  +  +++Q  R + +  F+   I 
Sbjct: 236 ELLKDRKGQRIVVFCSSKASVSSLYSKLHRKNLSVGQMSSDVEQDQREETMLAFRNSKID 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ +RG+D+  +  V N+DVP   E+Y+HR+GRT RA R G+A TLV+  D    
Sbjct: 296 IIVATDVISRGIDVDGIDLVVNYDVPRDPEDYVHRVGRTARAERKGEAITLVSPGDQLRF 355

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA----RKNNPIPQKSTGFDRRKKNY 413
             IEKLI+K ++ L G   +L P  E    A+         +      K        ++ 
Sbjct: 356 RRIEKLIDKDIEKL-GPPQNLGPGPEYAPNARRGKTFGPPHRQANAQGKGGNNQHSNRSN 414

Query: 414 SSQKSHIPLKES 425
           S      P K+ 
Sbjct: 415 SGGGGGGPHKKK 426


>gi|320589959|gb|EFX02415.1| eukaryotic initiation factor 4a-12 [Grosmannia clavigera kw1407]
          Length = 403

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 118/377 (31%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   GY  P+ +Q + I  V +  D    AQ+GTGKTA+F + ML 
Sbjct: 30  TFESMSLKENLLRGIYAYGYETPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQ 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++       +    L+L PTRELA Q+    +  G   N+     IGG       +KL++
Sbjct: 90  VINTASRETQA---LVLSPTRELATQIQSVVKALGDYMNVQCHACIGGTNVGEDIRKLDQ 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I  +   +P   Q +
Sbjct: 147 GQHIVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNQGFREQIYEVYRYLPPATQVV 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++ +++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 207 VVSATLPQDVLEMTYKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDL--YD 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG++ Q+ R  I+ +F++   +++++
Sbjct: 265 TLTITQAVIFCNTRRKVDWLTDKMRESNFTVSSMHGDMPQKERDSIMQDFRQFNTRVLIS 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 325 TDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIE 384

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ +
Sbjct: 385 LYYSTQIDEMPMNVADI 401


>gi|313624489|gb|EFR94491.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
           J1-023]
          Length = 516

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 152/372 (40%), Positives = 224/372 (60%), Gaps = 6/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++ GL  K+V +V   G+ + TPIQ KTIPL L   D+ G AQTGTGKTA+F LPM+ 
Sbjct: 3   KFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIH 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++    V+    LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++
Sbjct: 63  KIDQKNNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L ++N+E LV+DEAD ML+MGFI  I+ I   VP  RQTL
Sbjct: 120 NPQIVVGTPGRILDHINRRTLKLDNVETLVLDEADEMLNMGFIDDIETILKEVPAERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++++ E F+ +P+ I +     TA  I          + K+   +   L  
Sbjct: 180 LFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLI---EQFFVKVHEKEKFDVLSRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA
Sbjct: 237 VQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E
Sbjct: 297 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVE 356

Query: 362 KLIEKKVDWLNG 373
           +  +K++  L  
Sbjct: 357 ETTKKRMQPLQA 368


>gi|319941925|ref|ZP_08016246.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
           [Sutterella wadsworthensis 3_1_45B]
 gi|319804578|gb|EFW01448.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
           [Sutterella wadsworthensis 3_1_45B]
          Length = 503

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 162/468 (34%), Positives = 246/468 (52%), Gaps = 13/468 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL P+++ A+   GY +PTPIQ K IP+VL   DV G AQTGTGKTA + LP++ 
Sbjct: 29  SFDQFGLDPRILSAIERMGYTQPTPIQEKAIPVVLMGGDVMGAAQTGTGKTAGYGLPLIA 88

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +         P        IL PTRELA QV+DN  KY  +  L   ++ GG+    Q 
Sbjct: 89  RILPKANTSMSPARHPVRALILAPTRELADQVSDNLVKYCADTPLRAGVVYGGVDIRPQA 148

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L RG ++L  TPGR+LDH  +  + ++ +EI+V+DEADRMLDMGF+P I  I  L+P 
Sbjct: 149 DMLRRGVEILTATPGRLLDHVQQRSVNLSQVEIVVLDEADRMLDMGFLPDISRILQLLPQ 208

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC---A 233
            RQ+LLFSAT + E++K++++FL++   +      ++        +       K      
Sbjct: 209 HRQSLLFSATFSPEIKKLAKSFLKDNPTVIEVARENSTAETVTQELFAVNDREKTDVLID 268

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +L+        +   ++F N K     L  +LE+ G +  AIHG+  Q  R   L  FK 
Sbjct: 269 MLKTRGPEGTPLTQVLVFVNAKITCRRLARTLERVGINADAIHGDKTQEERQVALEGFKN 328

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I ++VA+D+AARGLDI ++  V N+DVP  AE+Y+HRIGRTGRAG  G A  L   ED
Sbjct: 329 GAIHVLVATDVAARGLDIKELPFVINYDVPYSAEDYVHRIGRTGRAGAKGVATMLATPED 388

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            + ++AIE L ++    ++    S  P   +   A +    +++   +  T  D R    
Sbjct: 389 KRLVEAIEALTKQTFKPISI---SPMPRTRRGSGAPYRRDDRSSYAERVDTPEDER-LAR 444

Query: 414 SSQKSHIPLKESEKISKLQQDIQEND-ADSLGFRGNMPAFMLPKNRGK 460
              ++++P  +  +         EN  A S   + + P F+  + + +
Sbjct: 445 ERARAYMPPAQRHRDPIFDMPYLENPRATSSAQKADAPVFLERQEKRR 492


>gi|293602831|ref|ZP_06685270.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
           43553]
 gi|292818625|gb|EFF77667.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
           43553]
          Length = 414

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 156/375 (41%), Positives = 225/375 (60%), Gaps = 6/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  ++ A+ D GY  PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L +
Sbjct: 7   FADLGLADSLLRAIADTGYTAPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFTLPILHL 66

Query: 63  LEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L + +    +   PR LIL PTREL AQVA++ + YGK  +LT  ++ GG+    Q   L
Sbjct: 67  LMQQKPEARKPGRPRCLILTPTRELTAQVAESVQTYGKYTSLTSMVMFGGVNINPQISAL 126

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+L+ TPGR+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 127 RKPLDILVATPGRLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKILALLPKQRQ 186

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ ++   L NP  + V   ++  E +          + +         
Sbjct: 187 NLLFSATFSDEIRTLARGVLNNPGEVSVTPRNTATELVTQTVHMVEQHHKRDLISHI--- 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      ++F   K     L   L K G +  AIHGN  Q +R + L+ FK+ T+ ++
Sbjct: 244 IRESGWHQVLVFTRTKHGANRLAEKLVKDGLTAAAIHGNKSQSARTRALAGFKDSTVTVL 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV   +IK +  
Sbjct: 304 VATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDNSEIKLLKD 363

Query: 360 IEKLIEKKVDWLNGD 374
           IE+LI+K ++    +
Sbjct: 364 IERLIKKTIERKPVE 378


>gi|224096586|ref|XP_002310663.1| predicted protein [Populus trichocarpa]
 gi|222853566|gb|EEE91113.1| predicted protein [Populus trichocarpa]
          Length = 407

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 133/377 (35%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++GL   V+  + + G+ KP+ IQ + +  +++  DV   AQ+GTGKT+   L    
Sbjct: 35  SFDEMGLKEDVLRGIYNYGFEKPSAIQQRALMPIIKGRDVIAQAQSGTGKTSMIALTACQ 94

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     V+    LIL PTRELA Q        G+N N+ V   IGG       +KLE 
Sbjct: 95  LVDTANREVQA---LILSPTRELAEQTEKVITAIGENINIQVHACIGGKSVGEDIRKLEY 151

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I +LV+DE+D ML  GF   I ++   +P   Q +
Sbjct: 152 GVHVVSGTPGRVCDMIKRRSLRTRAIRVLVLDESDEMLSRGFKDQIYDVYRYLPPELQVV 211

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+ +E+ +++  F+ +P +I V     T E I+  FVA   +  K        L  
Sbjct: 212 LISATLPNEILEITSKFMTDPVKILVKRDELTLEGIKQFFVAVEKEEWKFET--LTDLYD 269

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V A+HG++ QR R  I+SNF+ G  ++++ 
Sbjct: 270 TLTITQAVIFCNTKRKVDWLTAKMVEFNFTVSAMHGDMPQRERDAIMSNFRLGETRVLIT 329

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 330 TDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIE 389

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  ++  L
Sbjct: 390 QYYSTQIDEMPMNIGDL 406


>gi|89901799|ref|YP_524270.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
 gi|89346536|gb|ABD70739.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
          Length = 506

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 175/446 (39%), Positives = 244/446 (54%), Gaps = 19/446 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA L L+  +  AV D GY   TPIQ + IP+VLQ  DV G AQTGTGKTA+F LP+L
Sbjct: 15  MAFAQLQLAAPLARAVADMGYETMTPIQAQAIPVVLQGRDVMGAAQTGTGKTAAFALPLL 74

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             + K       P        +L PTRELA QVA   + Y  + NL  A++ GG+  + Q
Sbjct: 75  QRMLKHENSSTSPARHPVRALVLLPTRELADQVAQAIKDYAVHTNLRSAVVFGGMDMKPQ 134

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P
Sbjct: 135 TLELKKGVEVLVATPGRLLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 194

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R TLLFSAT + E+++++ ++LQ+P  IEV   ++ A T+E  F +  A   +     
Sbjct: 195 KQRITLLFSATFSSEIKRLASSYLQDPVTIEVARSNAAASTVEQHFYSVDADDKRHA--- 251

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              +     MK   +F N K     L  SLE +G    A+HG+  Q  R+K L  FK G 
Sbjct: 252 LHQILKSRGMKQAFVFVNSKLGCARLARSLEHEGLKTTALHGDKSQDERLKALEAFKSGE 311

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + L+V +D+AARGLDI DV  VFNFD+P  AE+Y+HRIGRTGRAG  G A + VAK DI+
Sbjct: 312 VDLLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGAAGLAVSFVAKSDIR 371

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +  IEKL+  K++    +     P +           RK   I      +    +N S 
Sbjct: 372 LVADIEKLLNTKIELEAVEYDEDVPDI-----------RKQGRINDGHRMYAEGAQNDSR 420

Query: 416 QKSHIPLKESEKISKLQQDIQENDAD 441
             +H      +   + Q    E    
Sbjct: 421 HGAHRSGSLRDVAHEGQYARPERPPR 446


>gi|255072433|ref|XP_002499891.1| predicted protein [Micromonas sp. RCC299]
 gi|226515153|gb|ACO61149.1| predicted protein [Micromonas sp. RCC299]
          Length = 394

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 201/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G+   ++  +   G+ KP+ IQ + I  +    DV   AQ+GTGKT+   L +  
Sbjct: 22  TFDGMGIREDLLRGLYSYGFEKPSAIQQRAIVPITSGRDVIAQAQSGTGKTSMISLALCQ 81

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+     V+    L+L PTRELA Q        G   ++ V   IGG       +KL+ 
Sbjct: 82  MLDTNTREVQA---LVLSPTRELATQTEKTALALGNFMSVQVHACIGGRSIGEDIRKLDH 138

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L   NI+ L++DEAD ML+ GF   I ++   +P   Q +
Sbjct: 139 GVHIVSGTPGRVFDMIKRRNLRTRNIKALILDEADEMLNKGFKEQIYDVYRYLPPETQVV 198

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 199 LVSATLPQEVLEMTTKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL--YD 256

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ GT ++++ 
Sbjct: 257 TLTITQAVIFCNTKRKVDWLTDKMRQNNFTVSSMHGDMPQKERDAIMGEFRGGTTRVLIT 316

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  ENYIHRIGR+GR GR G A   V  +D++ +  IE
Sbjct: 317 TDVWARGIDVQQVSLVINYDLPNNRENYIHRIGRSGRYGRKGVAINFVKADDVRILRDIE 376

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 377 QYYSTQIDEMPMNVADL 393


>gi|27364381|ref|NP_759909.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus CMCP6]
 gi|32363316|sp|Q8DDN6|RHLB_VIBVU RecName: Full=ATP-dependent RNA helicase rhlB
 gi|27360500|gb|AAO09436.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus CMCP6]
          Length = 435

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 143/432 (33%), Positives = 218/432 (50%), Gaps = 14/432 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+P+VV  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADLGLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +   PR +I+ PTRELA Q+ ++ E    +  +  AL  GG  ++ Q  
Sbjct: 70  HLLTTPAHEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLT 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G DVLI T GRI+D + +    +NNI+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLQGGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPAP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           ++ L    + T   +     F       E        +T        +   ++    L Q
Sbjct: 190 QERLNMLFSATLSYRVQELAFEHMHN-PEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R KIL  F +G++ 
Sbjct: 249 TLIEEEWPDRAIIFANTKYKCESIWAHLAADGHRVGLLTGDVPQKKREKILEQFTQGSVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   ++   ++
Sbjct: 309 LLVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAINL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE+ IE  +   + D    +  L  P+     +  N  R+ N    +S     RK N 
Sbjct: 369 PAIEEYIEHTIPVSDYDSSALIQDLPAPVRTP--SARNQQRRTNTGGARSGD---RKSNN 423

Query: 414 SSQKSHIPLKES 425
              +     KE+
Sbjct: 424 RRPRQPRQHKEA 435


>gi|258571293|ref|XP_002544450.1| eukaryotic initiation factor 4A-12 [Uncinocarpus reesii 1704]
 gi|237904720|gb|EEP79121.1| eukaryotic initiation factor 4A-12 [Uncinocarpus reesii 1704]
          Length = 399

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   G+  P+ IQ + I  + +  D    AQ+GTGKTA+F + +L 
Sbjct: 26  TFDDMHLKENLLRGIYAYGFESPSAIQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++      +    L+L PTRELA Q+ +     G   N+     IGG       +KL+ 
Sbjct: 86  VIDTALRETQA---LVLSPTRELATQIQNVIMAVGDYMNVQCHACIGGTNVGDDIRKLDH 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++LV+DEAD +L  GF   I ++   +P   Q +
Sbjct: 143 GQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADDLLARGFRDQIYDVYRYLPPATQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 203 VLSATLPYDVLSMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDL--YD 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++++
Sbjct: 261 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIS 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 321 TDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 381 LYYSTQIDEMPMNVADL 397


>gi|254509500|ref|ZP_05121567.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221533211|gb|EEE36199.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 419

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 151/406 (37%), Positives = 233/406 (57%), Gaps = 8/406 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGL+P +  A+  A + +PTPIQ + IPL L  HD+ G+AQTGTGKT +F LP++ 
Sbjct: 3   DFDMLGLAPALNDALKRANFTQPTPIQNQAIPLALNGHDILGLAQTGTGKTLAFGLPLID 62

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               + G+   +  + LIL PTREL  Q+AD+     K   L VA ++GG     Q   L
Sbjct: 63  HLLAQPGKPAPKTAKALILAPTRELVNQIADSLRGLTKKTKLRVATVVGGQSINKQIMFL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR++D   RG + ++++  LV+DEAD+MLDMGFI  ++ I   +   RQ
Sbjct: 123 SRGTDILVATPGRLIDLMERGAVDLSSVRHLVLDEADQMLDMGFIHALRRIAPELGTPRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  +++++S  +L NP+R++V+ P   A+ I                   + +
Sbjct: 183 TMLFSATMPKQMEELSRAYLTNPQRVQVSPPGKAADKITQSIHFVEKPAK---PAKLREI 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S D     ++F   K     L   L   G++  +IHGN  Q  R + +  F+ G I ++
Sbjct: 240 LSADMDALTLVFSRTKHGAEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRAGEINIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V +V N+D+P   +NY+HRIGRT RAGR G+A    + E++  +  
Sbjct: 300 VATDVAARGIDIPGVAYVINYDLPEVPDNYVHRIGRTARAGREGEAIAFCSAEEVDLLRQ 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           I+KL++ ++   +G++     P +    A+  + R+  P PQ S  
Sbjct: 360 IQKLMKIEIPVASGEMPEAVAPKKP---ARRQNNRRRGPKPQHSGA 402


>gi|91206662|sp|Q4WEB4|FAL1_ASPFU RecName: Full=ATP-dependent RNA helicase fal1
          Length = 398

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 203/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L 
Sbjct: 25  TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSIGILQ 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 85  VIDTV---VRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDY 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 142 GQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVV 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P R+ V     T E I+  F+A   +  K   L       
Sbjct: 202 VVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDL--YD 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++++
Sbjct: 260 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIS 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  IE
Sbjct: 320 TDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIE 379

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 380 LYYSTQIDEMPMNVADL 396


>gi|16272194|ref|NP_438403.1| ATP-dependent RNA helicase [Haemophilus influenzae Rd KW20]
 gi|260580884|ref|ZP_05848709.1| ATP-dependent RNA helicase [Haemophilus influenzae RdAW]
 gi|1169261|sp|P44586|DEAD_HAEIN RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|1573195|gb|AAC21900.1| ATP-dependent RNA helicase (deaD) [Haemophilus influenzae Rd KW20]
 gi|260092507|gb|EEW76445.1| ATP-dependent RNA helicase [Haemophilus influenzae RdAW]
          Length = 613

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 140/405 (34%), Positives = 230/405 (56%), Gaps = 20/405 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 5   ITFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E + K      +  L GG  ++ Q + L
Sbjct: 65  AQIDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 122 KQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+ +P+ +++       E       + +  +  +        
Sbjct: 182 TALFSATMPEPIRRITKRFMNDPQEVKIKV---NNENAPDIDQSCWYVHGVRKNEALLRF 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 239 LEVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 299 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 358

Query: 360 IEKLIEKKVDWLN-------------GDLSSLNPPLEKIDIAQHN 391
           IE L++K ++ +                ++ +   LE  D+ Q+ 
Sbjct: 359 IEHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYR 403


>gi|313638753|gb|EFS03844.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL S4-171]
          Length = 525

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 152/372 (40%), Positives = 223/372 (59%), Gaps = 6/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++ GL  K+V +V   G+ + TPIQ KTIPL L   D+ G AQTGTGKTA+F LPM+ 
Sbjct: 3   KFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIH 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++   +    + LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++
Sbjct: 63  KIDQ---KSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L + N+E LV+DEAD ML+MGFI  I+ I   VP  RQTL
Sbjct: 120 FPQIVVGTPGRILDHINRRTLKLENVETLVLDEADEMLNMGFIDDIETILKEVPAERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++++ E F+ +P+ I +     TA  I          + K+   +   L  
Sbjct: 180 LFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLI---EQFFVKVHEKEKFDVLSRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  IIF   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA
Sbjct: 237 VQAPELAIIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E
Sbjct: 297 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVE 356

Query: 362 KLIEKKVDWLNG 373
           +  +K++  L  
Sbjct: 357 ETTKKRMQPLQA 368


>gi|331224537|ref|XP_003324940.1| ATP-dependent rRNA helicase RRP3 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309303930|gb|EFP80521.1| ATP-dependent rRNA helicase RRP3 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 521

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 149/414 (35%), Positives = 230/414 (55%), Gaps = 10/414 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL P++  A     Y +PTPIQ ++IP  L+  D+ G+AQTG+GKTA+F LP+L 
Sbjct: 76  TFEELGLIPELCEACRTLNYKRPTPIQAESIPYALEDRDIIGLAQTGSGKTAAFALPVLQ 135

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L       +     +L PTRELA Q++  F+  G    +  A+++GGI   +Q   L +
Sbjct: 136 SL---WNDPKPFFCCVLAPTRELAYQISQQFDALGSTIGVKTAVIVGGIDMMSQAIALSK 192

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+ DH    K     N++ L++DEADR+LDM F P I  I  ++P  R+T
Sbjct: 193 RPHIIVATPGRLHDHLENTKGFSLRNLKYLIMDEADRLLDMDFGPVIDKILKVIPRERRT 252

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+    L +P +++++T   T + +   ++       K        L 
Sbjct: 253 YLFSATMTTKVAKLQRASLVSPVKVQMSTKYDTVDGLVQLYMFFPF---KNKDAYLVYLV 309

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++ + K+ IIF     +   L   L   GF    +HG + Q +R+  L+ FK G   ++V
Sbjct: 310 NELSGKSMIIFTRTVYDANRLSIILRLLGFPSIPLHGQLSQSTRLSSLNQFKSGNRSILV 369

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA TLV + D++ +  I
Sbjct: 370 ATDVASRGLDIPTVDCVINFDLPTNSKDYIHRVGRTARAGRSGKAVTLVTQYDVELLQRI 429

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK---NNPIPQKSTGFDRRKK 411
           E +I KK++    D   +    E++  A     R+   N     K +G  RRK+
Sbjct: 430 EGVIGKKMEEFPHDKEQVFLLSERVGEASREATREIRDNERNGGKKSGKFRRKR 483


>gi|289434134|ref|YP_003464006.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170378|emb|CBH26918.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 526

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 152/372 (40%), Positives = 223/372 (59%), Gaps = 6/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++ GL  K+V +V   G+ + TPIQ KTIPL L   D+ G AQTGTGKTA+F LPM+ 
Sbjct: 5   KFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIH 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++   +    + LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++
Sbjct: 65  KIDQ---KSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L + N+E LV+DEAD ML+MGFI  I+ I   VP  RQTL
Sbjct: 122 FPQIVVGTPGRILDHINRRTLKLENVETLVLDEADEMLNMGFIDDIETILKEVPAERQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++++ E F+ +P+ I +     TA  I          + K+   +   L  
Sbjct: 182 LFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLI---EQFFVKVHEKEKFDVLSRLLD 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  IIF   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA
Sbjct: 239 VQAPELAIIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E
Sbjct: 299 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVE 358

Query: 362 KLIEKKVDWLNG 373
           +  +K++  L  
Sbjct: 359 ETTKKRMQPLQA 370


>gi|167763057|ref|ZP_02435184.1| hypothetical protein BACSTE_01423 [Bacteroides stercoris ATCC
           43183]
 gi|167699397|gb|EDS15976.1| hypothetical protein BACSTE_01423 [Bacteroides stercoris ATCC
           43183]
          Length = 430

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 139/435 (31%), Positives = 237/435 (54%), Gaps = 8/435 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ K+IP++L+  D+  +AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELNLNDNVLEALDAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
             L +G         +++ PTRELA Q+    E +     ++   + GG     FE Q +
Sbjct: 61  NKLSEGGHPEDSINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q++++N L NP  +++       +       A Y  Y  +   + +
Sbjct: 181 RQTIMFSATMPAKIQQLAQNILHNPAEVKLAVSKPAEKI----VQAAYICYENQKLGIIR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L ++ T +  IIF + K  V  +  +L++   +V  +H +++Q  R +++  FK G I 
Sbjct: 237 SLFAEQTPERVIIFASSKLKVKEVAKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V +++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            +IE  +EK++  +      L    E    +     R +     +      +  N ++ K
Sbjct: 357 KSIENFLEKEIYKIPVP-EELGEAPEYKPRSNDGRKRSSFKGGGRRNNGTGKGGNRNNNK 415

Query: 418 SHIPLKESEKISKLQ 432
                K+  +  K +
Sbjct: 416 RRDGSKKPTQAEKQE 430


>gi|118374919|ref|XP_001020647.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89302414|gb|EAS00402.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 396

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL  +++  +L  G+ KP+ +Q + I  +++  DV   +Q GTGKT  F +  L 
Sbjct: 24  QFEKMGLKEELLRGILTYGFDKPSAVQQRAIKPIIKGRDVIVQSQAGTGKTGVFTIAALQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I++K       P+ ++L PTRELA Q        G   N+ V   IGG   +    +LE+
Sbjct: 84  IVDKNLRE---PQVIVLSPTRELAEQTQKVCLALGDYMNILVHCCIGGKSMDDDINRLEK 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGRI D   R  L   N+++LV+DEAD+ML MGF   + +I   +P   Q +
Sbjct: 141 GVQIISGTPGRIYDMIQRRHLKTRNVKMLVLDEADQMLSMGFKEQVYDIYRYLPHKNQNV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  E+ +++  F+ +P +  V     T E I+  F+    +  K   L      +
Sbjct: 201 VVSATLPQEILEMTNKFMNDPIKFLVKRDELTLEGIKQFFILVEKEEWKFETLCDL--YN 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN  K V  L   + +Q FS+C+IHG ++Q+ R KI+ +F+ G  +++VA
Sbjct: 259 TITITQAVIFCNTIKAVKWLSGKMREQNFSLCSIHGELNQKERDKIMQDFRNGEYRVLVA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+  RGLD+  V  V N+D+P   E YIHRIGR+GR GR G A   V  ED+  +  IE
Sbjct: 319 TDIWGRGLDVQQVSVVINYDLPTNRELYIHRIGRSGRFGRKGVAINFVKNEDVSALRDIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  ++S L
Sbjct: 379 QYYSTQIDEMPYNVSEL 395


>gi|296314174|ref|ZP_06864115.1| putative ATP-dependent RNA helicase RhlE [Neisseria polysaccharea
           ATCC 43768]
 gi|296839180|gb|EFH23118.1| putative ATP-dependent RNA helicase RhlE [Neisseria polysaccharea
           ATCC 43768]
          Length = 457

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 158/457 (34%), Positives = 238/457 (52%), Gaps = 23/457 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QRLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLMDLMQSGKVDFGRLEVLILDEADRMLDMGFIDDIETIVEATPSDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    ++P+ IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK I +K+  L             I+  +    RK+     K  G    +K    +  
Sbjct: 360 KIEKYINRKLPEL------------TIEGMEPTRKRKSAGGKPKGKGGWGDRKAGGRRGD 407

Query: 419 HIPLKE----SEKISKLQQDIQENDADSLGFRGNMPA 451
           H P KE      +    ++D  +   +  GF+G   A
Sbjct: 408 HKPGKEGFGGKTRGEGFKKDGFKKTGE--GFKGKRKA 442


>gi|168183325|ref|ZP_02617989.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Bf]
 gi|182673470|gb|EDT85431.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Bf]
          Length = 425

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 172/430 (40%), Positives = 257/430 (59%), Gaps = 11/430 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   +  A+ + GY K TPIQ K+IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L K +   + PR +   +L PTRELA Q+A++FE YGK  NL  A++ GG+    Q K
Sbjct: 61  QNLSKDKKANKNPRPIRALVLAPTRELAIQIAESFECYGKYINLKSAVIFGGVSQNPQTK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+LI TPGR+LD FN+  + + NIE  V+DEADRMLDMG I  ++ I S +P  
Sbjct: 121 VLREGVDILIATPGRMLDLFNQKYIDLRNIEFFVLDEADRMLDMGMIHDVKKIISKLPKI 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  E+ K+ ++ +++P R+EV   SST +TI       Y    K+   L +
Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTI---TQEVYHVRKKQKRALLK 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++++ ++F   K+    +   L + G    AIHGN  Q +R + L+NFKEG I+
Sbjct: 238 HLLKDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HVFN+++P+  E Y+HRIGRTGRAG  G A +    E+ K +
Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357

Query: 358 DAIEKLIEKKVDWL---NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
            AIEKLI K++  +      +  +N    K +  ++N+ ++  P  ++  G  R   N  
Sbjct: 358 KAIEKLINKEIPVVEDHPYKIRHINENEVKKENTKNNYNKR--PFSKRQGGNCRYSNNRR 415

Query: 415 SQKSHIPLKE 424
              S   +K+
Sbjct: 416 KNNSTKQIKK 425


>gi|299066188|emb|CBJ37372.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
           CMR15]
          Length = 481

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 164/418 (39%), Positives = 244/418 (58%), Gaps = 8/418 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   GL P ++ A+ ++GY + TPIQ   IP+V+   DV G AQTGTGKTA F LP++
Sbjct: 1   MTFDTFGLHPDILRALAESGYTRATPIQAAAIPVVIAGRDVMGAAQTGTGKTAGFSLPII 60

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L    +    P        IL PTRELA QV DN  KY K+  L  A++ GG+    Q
Sbjct: 61  QNLLPDASTSASPARHPVRALILTPTRELADQVYDNVAKYAKHTALRSAVVFGGVDMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L RG +VL+ TPGR+LDH  +  + ++ + +LV+DEADRMLDMGF+P +Q I +L+P
Sbjct: 121 TEQLRRGVEVLVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCAL 234
             RQTLLFSAT + E++K++ ++L++P+ IEV   ++TA+ +          + +     
Sbjct: 181 AHRQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVH 240

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L +    Q      I+F N K     L  +LE++  +  AIHG+  Q  RM+ L  FK+G
Sbjct: 241 LLRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQTERMQTLEAFKQG 300

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           T+ ++VA+D+AARGLDI  +  V NFD+P  AE+Y+HRIGRTGRAG  G A +L A  D 
Sbjct: 301 TVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDE 360

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           + +  IEKLI++ +      L+  +P  E+    +     +     +     +R ++N
Sbjct: 361 RLLADIEKLIKRNLPR--EALTDFDPTGEQARERERRERDERRNRTEIRRARERDERN 416


>gi|134296873|ref|YP_001120608.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134140030|gb|ABO55773.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
           G4]
          Length = 486

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 160/395 (40%), Positives = 232/395 (58%), Gaps = 9/395 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTFYTEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAET+            ++     
Sbjct: 181 RRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQ 389
           +  IE+LI++++  + + G     N   E I   +
Sbjct: 358 LRDIERLIKREIPQEVIAGFEPDPNVKPEPIQQRR 392


>gi|315302253|ref|ZP_07873161.1| dead-box ATP-dependent rna helicase ydbr [Listeria ivanovii FSL
           F6-596]
 gi|313629376|gb|EFR97601.1| dead-box ATP-dependent rna helicase ydbr [Listeria ivanovii FSL
           F6-596]
          Length = 526

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 151/372 (40%), Positives = 224/372 (60%), Gaps = 6/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++ GL  K+V +V   G+ + TPIQ KTIPL L   D+ G AQTGTGKTA+F LPM+ 
Sbjct: 5   KFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIH 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++   +    + LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++
Sbjct: 65  KIDQ---KSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L ++N+E LV+DEAD ML+MGFI  I+ I   VP  RQTL
Sbjct: 122 NPQIVVGTPGRILDHINRRTLKLDNVETLVLDEADEMLNMGFIDDIETILKEVPAERQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++++ E F+ +P+ I +     TA  I          + K+   +   L  
Sbjct: 182 LFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLI---EQFFVKVHEKEKFDVLSRLLD 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA
Sbjct: 239 VQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E
Sbjct: 299 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVE 358

Query: 362 KLIEKKVDWLNG 373
           +  +K++  L  
Sbjct: 359 ETTKKRMQPLQA 370


>gi|220909835|ref|YP_002485146.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp.
           PCC 7425]
 gi|219866446|gb|ACL46785.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7425]
          Length = 457

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 151/368 (41%), Positives = 221/368 (60%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGLSP  V  +   G+ +PTPIQI+ IP +L   DV G AQTGTGKTA+F LP+L
Sbjct: 3   LSFSQLGLSPARVQRLEALGFNEPTPIQIQAIPPLLAGRDVIGQAQTGTGKTAAFALPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LIL PTRELA QV+ +   +  +  + V  + GG   E Q ++L 
Sbjct: 63  ERIDTQSPAVQ---ALILTPTRELAVQVSQSIYNFKADPKIRVLAIYGGQAIERQIERLH 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA VL+ TPGR+LD  NRG L +N +  LV+DEAD MLDMGF+P ++ I S  P  RQ 
Sbjct: 120 KGAQVLVGTPGRVLDLLNRGVLNLNALAWLVLDEADEMLDMGFMPDVKQILSQAPAQRQM 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM   + +++  FL++P+ I V  P +    IE         +SK  +   QL+ 
Sbjct: 180 AFFSATMAPPVYRLATQFLRSPETITVEHPKAAPSRIEQVAYKVPRGWSK--STTLQLVL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  ++ IIF   +K    L   L+  G+SV   HG++ Q  R ++L  F++G I+ +V
Sbjct: 238 EMEDPESAIIFVRTRKVAAELTSQLQSHGYSVDEYHGDLSQSQRERLLQRFRQGQIRWVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL + D+ HV N+D+P+  E+Y+HRIGRTGRAG+ G A +L    +   +  I
Sbjct: 298 ATDIAARGLHVDDLTHVINYDLPDSVESYVHRIGRTGRAGKTGIAVSLFQPLERHKLGQI 357

Query: 361 EKLIEKKV 368
           E+ I +K+
Sbjct: 358 ERHIRQKL 365


>gi|87121489|ref|ZP_01077378.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
 gi|86163332|gb|EAQ64608.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
          Length = 617

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 155/442 (35%), Positives = 243/442 (54%), Gaps = 28/442 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL   V+ AV+D GY +P+PIQ ++IP +L+ HD+ G AQTGTGKTA+F LP+L+
Sbjct: 9   TFASLGLDANVLKAVVDQGYEQPSPIQAQSIPHLLEGHDLLGQAQTGTGKTAAFALPLLS 68

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            +     + +  + L+L PTRELA QV++ F+ Y +N      L I  G+ ++ Q ++L 
Sbjct: 69  RI---NPKDKNTQLLVLAPTRELAIQVSEAFQTYARNIPDFHVLPIYGGMSYDTQLRQLR 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  R  L +++++ LV+DEAD ML MGFI  ++ I    P  RQ 
Sbjct: 126 RGVQVVVGTPGRVMDHIRRKTLKLDSLQALVLDEADEMLRMGFIDDVEWILEHTPEQRQI 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   +++V+   L NPK +++ T ++T  +I   +      +          + 
Sbjct: 186 ALFSATMPSVIRQVANRHLNNPKEVKIVTKTATNTSITQKYWQVSGLHKLDALTRILEMS 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M   IIF   K   V L   L  +G +  A++G+I Q  R + +   K G I ++V
Sbjct: 246 EHDGM---IIFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVERIKRGQIDILV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLDI  + HV N+D+P   E+Y+HRIGRTGRAGR G A   VA  + + + AI
Sbjct: 303 ATDVVARGLDIDRISHVVNYDIPYDTESYVHRIGRTGRAGRTGNAILFVAHRERRMLQAI 362

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG---------FDRRKK 411
           E+   + ++ +            ++  A   + ++ N   Q+ T          F    +
Sbjct: 363 ERATRQPIERM------------QLPTASDINTQRVNRFKQRITDTLDNADLDFFIELAE 410

Query: 412 NYSSQKSHIPLKESEKISKLQQ 433
           +Y  +    PLK +  ++ + Q
Sbjct: 411 SYQKEHEAEPLKVAAALAHMAQ 432


>gi|330445855|ref|ZP_08309507.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490046|dbj|GAA04004.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 455

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 156/436 (35%), Positives = 241/436 (55%), Gaps = 6/436 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V AV + GY  PTPIQ K IP+ L   ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSDSIVKAVTEMGYTSPTPIQEKAIPVALTGKNLMAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L+ G   R +  R LIL PTRELA QV DN ++Y K+ NL    + GG+ +E Q ++L
Sbjct: 61  QMLDDGIKVRPKRVRALILAPTRELAVQVEDNIKQYSKHLNLKSMAMYGGVDYEPQKRRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + IEILV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDAIEILVLDEADRMLDMGFIEDINKIVERLPVDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT++D+++ +++  ++NP  I   + +  A                  + L   L
Sbjct: 181 NMLFSATLSDQVRFLAKTAVRNPIEI---SVAKNASADPKIDQWLVTVDKDMKSSLLSHL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  +IF   K     L   LEK+G    + H    Q  R ++L +FK G +Q +
Sbjct: 238 IQEQQWEQALIFIETKHGAAKLVTQLEKRGIKAESFHSGRSQGVRSQLLEDFKNGKLQYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ +A+RG+DI  +  V N+D+P   E Y+HRIGRTGRAG  G+A + V+K++ K++  
Sbjct: 298 IATGVASRGIDIEQLTRVVNYDLPFPPEEYVHRIGRTGRAGASGEAISFVSKDNFKNLCM 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE L+   +    + G       P+  ++               +    +R+ +  +  +
Sbjct: 358 IESLLGHLIVRKEIEGFKPKKEVPVSILNYKPKFKKPAKPRDDAEGENNERKPRRDNRSR 417

Query: 418 SHIPLKESEKISKLQQ 433
           ++ P  +  K +K ++
Sbjct: 418 NNAPRGDKSKSTKPKR 433


>gi|332637958|ref|ZP_08416821.1| putative ATP-dependent RNA helicase [Weissella cibaria KACC 11862]
          Length = 524

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 150/368 (40%), Positives = 228/368 (61%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+   GYV+ TPIQ +TIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFSELGLSQDLLTAIEKHGYVEATPIQEQTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++    +V+    L++ PTRELA Q  D   K G++  + V  + GG     Q   L 
Sbjct: 61  NMIDTDSNQVQ---ALVVSPTRELAIQTQDELFKLGRDKRVKVQAVFGGADIRRQINGLS 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR++DH NRG + ++N++ LV+DEAD ML+MGF+  I++I   VP  RQT
Sbjct: 118 HGAHIVVGTPGRLIDHINRGTINLSNVKTLVLDEADEMLNMGFLEDIESILKAVPDQRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+  P+ I++     T + +E  +V                + 
Sbjct: 178 LLFSATMPPAIKRIGVQFMTEPEHIQIAAKELTTDLVEQYYVRVRDFEK---FDTLTHIL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  I+F   K+ V  L   LE +GF+   IHG++ Q+ R ++L  FK G I+++V
Sbjct: 235 DVQQPKLAIMFGRTKRRVDELTRGLELRGFNAAGIHGDLTQQKRSQVLKQFKNGEIKILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V +V+NFD+P  +E+Y+HRIGRTGRAG HG + T ++  ++ ++  I
Sbjct: 295 ATDVAARGLDVSGVDYVYNFDIPQDSESYVHRIGRTGRAGAHGTSVTFISNAEMDYLKDI 354

Query: 361 EKLIEKKV 368
           EKL +K++
Sbjct: 355 EKLTKKRM 362


>gi|53718749|ref|YP_107735.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           K96243]
 gi|53725492|ref|YP_103512.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
 gi|67643786|ref|ZP_00442529.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
 gi|121599991|ref|YP_992380.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
 gi|124383787|ref|YP_001026818.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
 gi|126449417|ref|YP_001079898.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
 gi|126454058|ref|YP_001065480.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
 gi|134281039|ref|ZP_01767748.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
 gi|167893438|ref|ZP_02480840.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 7894]
 gi|217419830|ref|ZP_03451336.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
 gi|242317719|ref|ZP_04816735.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
 gi|52209163|emb|CAH35107.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           K96243]
 gi|52428915|gb|AAU49508.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
 gi|121228801|gb|ABM51319.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
 gi|124291807|gb|ABN01076.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
 gi|126227700|gb|ABN91240.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
 gi|126242287|gb|ABO05380.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
 gi|134247345|gb|EBA47430.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
 gi|217397134|gb|EEC37150.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
 gi|238525219|gb|EEP88647.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
 gi|242140958|gb|EES27360.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
          Length = 482

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 175/469 (37%), Positives = 252/469 (53%), Gaps = 17/469 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+ +++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   ++ A T+            +   +  
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                  ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 ---IRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKK--VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +  IEKLI++   ++ L  DL             +    R+  P  ++S G +R      
Sbjct: 369 LADIEKLIKRTLSLETLALDLPRHRHDDRGGRRERDRDERRGAPAGRRSAGGERTHHPRR 428

Query: 415 SQ-------KSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPK 456
                    K ++P   + +  + +    E  A        +  F +P+
Sbjct: 429 EAPIDDFFLKPYVPSPSANQPDEAKPVQPEKKAPKQPLAALLGGFGMPR 477


>gi|126442203|ref|YP_001058242.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
 gi|167901897|ref|ZP_02489102.1| DEAD/DEAH box helicase [Burkholderia pseudomallei NCTC 13177]
 gi|237811490|ref|YP_002895941.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
 gi|126221696|gb|ABN85202.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
 gi|237505268|gb|ACQ97586.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
          Length = 481

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 175/469 (37%), Positives = 252/469 (53%), Gaps = 17/469 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+ +++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   ++ A T+            +   +  
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                  ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 ---IRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKK--VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +  IEKLI++   ++ L  DL             +    R+  P  ++S G +R      
Sbjct: 369 LADIEKLIKRTLSLETLALDLPRHRHDDRGGRRERDRDERRGAPAGRRSAGGERTHHPRR 428

Query: 415 SQ-------KSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPK 456
                    K ++P   + +  + +    E  A        +  F +P+
Sbjct: 429 EAPIDDFFLKPYVPSPSANQPDEAKPVQPEKKAPKQPLAALLGGFGMPR 477


>gi|283779149|ref|YP_003369904.1| DEAD/DEAH box helicase domain-containing protein [Pirellula staleyi
           DSM 6068]
 gi|283437602|gb|ADB16044.1| DEAD/DEAH box helicase domain protein [Pirellula staleyi DSM 6068]
          Length = 598

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 156/397 (39%), Positives = 230/397 (57%), Gaps = 10/397 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           M F DLGL+  +V A+  A Y +PT IQ++ IP  +   D+ G AQTGTGKTA+F LP  
Sbjct: 1   MSFEDLGLAEPLVRALNAANYTEPTAIQLQAIPPAIAGRDLQGCAQTGTGKTAAFALPLL 60

Query: 59  --MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             ++    +G+ R R+PR L+L PTRELA Q+ D+  +YG++       + GG+    Q 
Sbjct: 61  DRLIKNPRQGKLRGRLPRALVLSPTRELAGQIHDSVRRYGRHAMQNSLTIYGGVSQVPQV 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  G DVLI TPGR+ D   +G + ++ IE+ V+DEADRMLDMGF+P I+ I + +P 
Sbjct: 121 KGLNAGQDVLIATPGRLCDLMQQGYINLSEIEVFVLDEADRMLDMGFMPDIRRIIAKLPQ 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +QTLLFSATM  E+QK++   L +P  I +    +TA+ I     + Y   +K    L 
Sbjct: 181 QKQTLLFSATMPPEIQKLASQLLHDPVEINIEPERATADGI---TQSLYYVPTKHKPELL 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             +  ++ +   ++F   K         LEK G  V AIHGN  Q +R + L  FK G I
Sbjct: 238 ASVLKREEVTRAVVFVRTKHGCNKAALQLEKTGLKVDAIHGNKSQSARQRTLYAFKNGHI 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARGLD+  V HV N+D+P   E Y+HRIGRTGRAG+ G A +    E    
Sbjct: 298 QVLVATDVAARGLDVTGVSHVINYDLPMEPETYVHRIGRTGRAGKSGIAISFCDDEQRGL 357

Query: 357 IDAIEKLIEKKVD---WLNGDLSSLNPPLEKIDIAQH 390
           +  +++++ KK+     +   +  L   +++   A+ 
Sbjct: 358 LRDVQRILGKKIPVENEMPDGIPGLPANIDRDGGAKR 394


>gi|261250797|ref|ZP_05943371.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891]
 gi|260937670|gb|EEX93658.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891]
          Length = 660

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 157/463 (33%), Positives = 245/463 (52%), Gaps = 35/463 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+   G+V PTPIQ   IP +L   D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             L+  + +   P+ +IL PTRELA QVA   +  GKN      L I G      Q + L
Sbjct: 66  NKLDLAQRK---PQAIILAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D  NR +L ++ +   V+DEAD ML+MGF+  +  I    P + Q
Sbjct: 123 KNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPSSAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   L+ + E FL++P+ I+V   + T + +E  F         +        
Sbjct: 183 RVLFSATMPPMLKSIVERFLRDPETIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLET 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D     I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 243 EETD---ASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    ++ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRT 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE++ +  ++ +        P  +K+  A+                  +      ++K H
Sbjct: 360 IERVTKSSMEEIQ------LPHRDKVAEAR----------------LAKLGAELETEKEH 397

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
             L++  ++ +  Q+  E DA +L       A +L + +GK  
Sbjct: 398 KALEKFSELVEKLQESLELDAATLA------AILLKRQQGKRP 434


>gi|146310946|ref|YP_001176020.1| ATP-dependent RNA helicase RhlE [Enterobacter sp. 638]
 gi|145317822|gb|ABP59969.1| DEAD/DEAH box helicase domain protein [Enterobacter sp. 638]
          Length = 462

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 162/461 (35%), Positives = 256/461 (55%), Gaps = 22/461 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P+++ AV + GY++PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDTLGLNPEILRAVAEQGYLEPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L +        R  R LIL PTRELAAQ+ +N  +Y +  ++   ++ GG+    Q  
Sbjct: 61  QRLVQNEPHAKGRRPVRALILTPTRELAAQIGENVREYSRYLDIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRSGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++E  L+NP  IEV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDEIKGLAEKLLRNPLEIEVARRNTASEQV---SQYVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 QMIGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDI----------------AQHNHARKNNPIPQ 401
             IE+L++K++  +  +   ++  ++   I                 +    R++     
Sbjct: 358 HDIERLLKKEIPRIAIEGYEVDKSIKADPIQNGRQGGGGRGQGGGGGRSQQPRRSESGAP 417

Query: 402 KSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADS 442
           K++G   R+   +      P +  E     +   +      
Sbjct: 418 KASGKPPRRSGDAKPAGENPWRSGEAKPAGEGQRRRKPRKP 458


>gi|300856701|ref|YP_003781685.1| putative RNA helicase [Clostridium ljungdahlii DSM 13528]
 gi|300436816|gb|ADK16583.1| predicted RNA helicase [Clostridium ljungdahlii DSM 13528]
          Length = 525

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 149/368 (40%), Positives = 225/368 (61%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F+DL L PKV+ A+ D G+ +P+ IQ ++IP++L  +DV G AQTGTGKT +F  PML
Sbjct: 4   INFSDLNLDPKVLQAIDDMGFEEPSQIQAESIPVILDGNDVIGQAQTGTGKTLAFGAPML 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + +     + +    LI+ PTRELA QV D   +  K   + +  + GG P + Q + L+
Sbjct: 64  SKI---TTKSKHISALIVTPTRELAIQVNDELSRIAKFKKVALLPIYGGQPIDRQIRSLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGRILDH  R  L ++NIE L++DEAD MLDMGFI  I+NI       RQT
Sbjct: 121 RGMDVVVGTPGRILDHIKRKTLDLSNIEFLILDEADEMLDMGFIEDIENIIKATNSDRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D+++K+S  ++++  +      +    T++      Y    K        + 
Sbjct: 181 LLFSATMPDQIKKLSSRYMKSNIKSI--KIAKNTLTVDKTKQYYYEIKQKDRFESLCRIL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D   + IIFC  K+ V  L   L+ +G++V  +HG++ Q  R+  L  FKEG+++ +V
Sbjct: 239 DVDEPSSAIIFCKTKRGVDELVEGLQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLEFLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ +V HV N+D+P   E+Y+HRIGRTGRA + G A++LV   +   +  I
Sbjct: 299 ATDVAARGIDVENVSHVINYDLPQDTESYVHRIGRTGRANKEGIAYSLVTPREYILLKQI 358

Query: 361 EKLIEKKV 368
           EK  + K+
Sbjct: 359 EKFTKSKI 366


>gi|300742137|ref|ZP_07072158.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
 gi|300381322|gb|EFJ77884.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
          Length = 719

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 145/375 (38%), Positives = 222/375 (59%), Gaps = 7/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL P+V+ A+ + GY KP+PIQ +TIP +L  +DV G+AQTGTGKTA+F LP L+ 
Sbjct: 130 FTDLGLDPRVLSALEEVGYEKPSPIQEQTIPPLLDGNDVVGLAQTGTGKTAAFALPALSR 189

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKK 118
           +          R  + L+L PTRELA QVA+ F  Y  +      L I  G P+  Q   
Sbjct: 190 MAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAG 249

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RGA V++ TPGR++DH  +G L ++N++ LV+DEAD ML MGF   ++ I    P  +
Sbjct: 250 LRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVETILEGTPDAK 309

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q  LFSATM + ++K+++ +L +P  + V T ++T   I   ++     +          
Sbjct: 310 QVALFSATMPNSIRKIAQQYLNDPTEVRVKTKTTTGANIRQRYMQVMHSHKLDAMTRVLE 369

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +++ D +   I+F   KK    +   L+ +GF   AI+G+I Q+ R + +   ++G I +
Sbjct: 370 VENYDGI---IVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRIDI 426

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  +  V N+D+P+  E+Y+HRIGRTGRAGR G+A   V   +   + 
Sbjct: 427 LVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRDGEAILFVTPREKYMLR 486

Query: 359 AIEKLIEKKVDWLNG 373
            IEK   +KV+ ++ 
Sbjct: 487 QIEKATRQKVEPMHM 501


>gi|303319503|ref|XP_003069751.1| Eukaryotic translation initiation factor, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|142985565|sp|Q1DTB3|FAL1_COCIM RecName: Full=ATP-dependent RNA helicase FAL1
 gi|240109437|gb|EER27606.1| Eukaryotic translation initiation factor, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|320040787|gb|EFW22720.1| ATP-dependent RNA helicase FAL1 [Coccidioides posadasii str.
           Silveira]
          Length = 399

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   G+  P+ IQ + I  + +  D    AQ+GTGKTA+F + +L 
Sbjct: 26  TFDDMHLKENLLRGIYAYGFESPSAIQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++      +    L+L PTRELA Q+ +     G   N+     IGG       +KL+ 
Sbjct: 86  VIDTALRETQA---LVLSPTRELATQIQNVIMAVGDYMNVQCHACIGGTNVGDDIRKLDH 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++LV+DEAD +L  GF   I ++   +P   Q +
Sbjct: 143 GQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADDLLARGFREQIYDVYRYLPPATQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 203 VLSATLPYDVLSMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDL--YD 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++++
Sbjct: 261 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIS 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 321 TDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 381 LYYSTQIDEMPMNVADL 397


>gi|116668333|pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
           A Resolution
          Length = 374

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 132/377 (35%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 2   TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA QV       G   N+     IGG       +KL+ 
Sbjct: 62  CLDI---QVRETQALILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTNVGEDIRKLDY 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 119 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 179 LISATLPHEVLEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 237 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 297 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIRVLRDIE 356

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 357 QYYSTQIDEMPMNVADL 373


>gi|238502855|ref|XP_002382661.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus flavus NRRL3357]
 gi|317027125|ref|XP_001400167.2| ATP-dependent RNA helicase FAL1 [Aspergillus niger CBS 513.88]
 gi|317148165|ref|XP_001822547.2| ATP-dependent RNA helicase FAL1 [Aspergillus oryzae RIB40]
 gi|152032452|sp|A5AAE5|FAL1_ASPNC RecName: Full=ATP-dependent RNA helicase fal1
 gi|220691471|gb|EED47819.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus flavus NRRL3357]
          Length = 399

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 118/377 (31%), Positives = 201/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L 
Sbjct: 26  TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++      +    L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 86  VIDTVVRESQA---LVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDY 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 143 GQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P R+ V     T E I+  F+A   +  K   L       
Sbjct: 203 VVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDL--YD 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++++
Sbjct: 261 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIS 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  IE
Sbjct: 321 TDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 381 LYYSTQIDEMPMNVADL 397


>gi|76808776|ref|YP_332762.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           1710b]
 gi|76578229|gb|ABA47704.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           1710b]
          Length = 559

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 175/469 (37%), Positives = 252/469 (53%), Gaps = 17/469 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+ +++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 89  TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 148

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q 
Sbjct: 149 RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 208

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 209 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 268

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   ++ A T+            +   +  
Sbjct: 269 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 328

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                  ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 329 ---IRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEI 385

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 386 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 445

Query: 357 IDAIEKLIEKK--VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +  IEKLI++   ++ L  DL             +    R+  P  ++S G +R      
Sbjct: 446 LADIEKLIKRTLSLETLALDLPRHRHDDRGGRRERDRDERRGAPAGRRSAGGERTHHPRR 505

Query: 415 SQ-------KSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPK 456
                    K ++P   + +  + +    E  A        +  F +P+
Sbjct: 506 EAPIDDFFLKPYVPSPSANQPDEAKPVQPEKKAPKQPLAALLGGFGMPR 554


>gi|91206663|sp|Q2UAK1|FAL1_ASPOR RecName: Full=ATP-dependent RNA helicase fal1
 gi|83771282|dbj|BAE61414.1| unnamed protein product [Aspergillus oryzae]
          Length = 398

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 118/377 (31%), Positives = 201/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L 
Sbjct: 25  TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++      +    L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 85  VIDTVVRESQA---LVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDY 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 142 GQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVV 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P R+ V     T E I+  F+A   +  K   L       
Sbjct: 202 VVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDL--YD 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++++
Sbjct: 260 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIS 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  IE
Sbjct: 320 TDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIE 379

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 380 LYYSTQIDEMPMNVADL 396


>gi|33599198|ref|NP_886758.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
 gi|33575244|emb|CAE30707.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
          Length = 574

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 160/450 (35%), Positives = 247/450 (54%), Gaps = 9/450 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F DLGL+P ++ A+ +AG+ +PT +Q   IP  +   D+   +QTG+GKTA+F+LP +
Sbjct: 13  MSFEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPAL 72

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
             I  +   +    + L+L PTRELA QVAD    YG+N      A ++GG+P+ AQ K 
Sbjct: 73  NRIAHQPGNKGVGVQVLVLTPTRELALQVADATASYGRNLPGLRTATVVGGMPYGAQLKA 132

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R  DVL+ TPGR++DH   G++ +N +  LV+DEADRMLDMGFI  I+ I   +P  R
Sbjct: 133 LSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPKER 192

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+   + +++E  ++ P+RIE+         I    +       K    L   
Sbjct: 193 QTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKHANITQSLLYADDAAHKMR--LLDH 250

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   I+F   K+   +L   L  QGF+  A+HG+++QR R + L   + G +++
Sbjct: 251 VLRDARLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGQLQRGQLRV 310

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + H  NFD+P +AE+Y+HRIGRTGRAGR G+AFTL    +   + 
Sbjct: 311 LVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGQAFTLATHAERHKVR 370

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG--FDRRKKNYSSQ 416
            IE  I + +   N ++ +   P      +     R   P+  K  G     R+     Q
Sbjct: 371 RIEHYIGQSI---NAEVIAGLEPQRTPRPSTGGPRRGGKPMGGKRPGGYGAPREFGDRPQ 427

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFR 446
           + +    + +   + Q+D  +    S G R
Sbjct: 428 RPYGDRPQRDFGDRPQRDASDRPQRSFGDR 457


>gi|33593984|ref|NP_881628.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|33564058|emb|CAE43326.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|332383401|gb|AEE68248.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
          Length = 574

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 160/450 (35%), Positives = 247/450 (54%), Gaps = 9/450 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F DLGL+P ++ A+ +AG+ +PT +Q   IP  +   D+   +QTG+GKTA+F+LP +
Sbjct: 13  MSFEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPAL 72

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
             I  +   +    + L+L PTRELA QVAD    YG+N      A ++GG+P+ AQ K 
Sbjct: 73  NRIAHQPGNKGVGVQVLVLTPTRELALQVADATASYGRNLPGLRTATVVGGMPYGAQLKA 132

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R  DVL+ TPGR++DH   G++ +N +  LV+DEADRMLDMGFI  I+ I   +P  R
Sbjct: 133 LSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPKER 192

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+   + +++E  ++ P+RIE+         I    +       K    L   
Sbjct: 193 QTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKHANITQSLLYADDAAHKMR--LLDH 250

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   I+F   K+   +L   L  QGF+  A+HG+++QR R + L   + G +++
Sbjct: 251 VLRDARLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGQLQRGQLRV 310

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + H  NFD+P +AE+Y+HRIGRTGRAGR G+AFTL    +   + 
Sbjct: 311 LVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGQAFTLATHAERHKVR 370

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG--FDRRKKNYSSQ 416
            IE  I + +   N ++ +   P      +     R   P+  K  G     R+     Q
Sbjct: 371 RIEHYIGQSI---NAEVIAGLEPQRTPRPSTGGPRRGGKPMGGKRPGGYGAPREFGDRPQ 427

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFR 446
           + +    + +   + Q+D  +    S G R
Sbjct: 428 RPYGDRPQRDFGDRPQRDASDRPQRSFGDR 457


>gi|320157764|ref|YP_004190143.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus MO6-24/O]
 gi|319933076|gb|ADV87940.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus MO6-24/O]
          Length = 435

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 143/432 (33%), Positives = 218/432 (50%), Gaps = 14/432 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+P+VV  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADLGLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +   PR +I+ PTRELA Q+ ++ E    +  +  AL  GG  ++ Q  
Sbjct: 70  HLLTTPAHEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G DVLI T GRI+D + +    +NNI+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLQGGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPAP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           ++ L    + T   +     F       E        +T        +   ++    L Q
Sbjct: 190 QERLNMLFSATLSYRVQELAFEHMHN-PEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R KIL  F +G++ 
Sbjct: 249 TLIEEEWPDRAIIFANTKYKCESIWAHLAADGHRVGLLTGDVPQKKREKILEQFTQGSVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   ++   ++
Sbjct: 309 LLVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAINL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE+ IE  +   + D    +  L  P+     +  N  R+ N    +S     RK N 
Sbjct: 369 PAIEEYIEHTIPVSDYDSSALIQDLPAPVRTP--SARNQQRRTNTGGARSGD---RKSNN 423

Query: 414 SSQKSHIPLKES 425
              +     KE+
Sbjct: 424 RRPRQPRQHKEA 435


>gi|90416628|ref|ZP_01224559.1| putative ATP-dependent RNA helicase RhlE [marine gamma
           proteobacterium HTCC2207]
 gi|90331827|gb|EAS47055.1| putative ATP-dependent RNA helicase RhlE [marine gamma
           proteobacterium HTCC2207]
          Length = 549

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 182/452 (40%), Positives = 261/452 (57%), Gaps = 9/452 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGLS  ++ A+   GY  P+PIQ K IP VL   DV   AQTGTGKTA F LP+L 
Sbjct: 3   TFKDLGLSAPILKAITAQGYDTPSPIQAKAIPAVLDGRDVMAAAQTGTGKTAGFTLPILQ 62

Query: 62  ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L  G+  +    RTLIL PTRELAAQV ++   YGK+ +L+ A++ GG+    Q  KL 
Sbjct: 63  LLSAGKRAQPNQVRTLILTPTRELAAQVGESVATYGKHMSLSSAVVFGGVKINPQMMKLR 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVL+ TPGR++D +++  +    +E+LV+DEADRMLDMGFI  I+ I SL+P  RQ 
Sbjct: 123 RGVDVLVATPGRLMDLYSQNAVKFTYLEVLVLDEADRMLDMGFIHDIKRIISLLPKRRQN 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT +D+++K+++  + NP  I V   ++TA T+     + Y    K+ A +   L 
Sbjct: 183 LMFSATFSDDIRKLAKGLVHNPIEISVTPRNATAPTV---TQSIYTVDKKQKAGVLTRLI 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     ++F   K     L   LE +G    AIHGN  Q +R K L+ FK G ++++V
Sbjct: 240 HDNKWGQALVFTKTKHGANKLTKHLEAEGIVAAAIHGNKSQGARTKALAGFKAGEVRILV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NFD+PN AE+Y+HRIGRTGRAG  G A +LV+ +++  +  I
Sbjct: 300 ATDIAARGLDIEQLPQVVNFDLPNVAEDYVHRIGRTGRAGSTGTAISLVSADEVDLLSDI 359

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDI-AQHNHARKNNPIPQKSTGFDR--RKKNYSS 415
           E+L +K +  + ++G   S + P   +D   + N  RK       S G  +   K   SS
Sbjct: 360 ERLTQKLLPREVMDGFEPSHDVPETFLDRPVRTNKQRKALNSQTNSRGKSKPDPKVKRSS 419

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             SH P   ++  +       + D    G R 
Sbjct: 420 TYSHGPKPGAKHKTGGGSHSGQRDGSRDGNRD 451


>gi|298385617|ref|ZP_06995175.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
 gi|298261758|gb|EFI04624.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
          Length = 413

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 141/424 (33%), Positives = 231/424 (54%), Gaps = 16/424 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ + IP++L+  D+  +AQTGTGKTA+F+LP+L
Sbjct: 1   MKFSELKLNANVLDALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
             L +G         +I+ PTRELA Q+    E +      +   + GG     FE Q K
Sbjct: 61  NKLSEGGHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPASSVAVYGGNDGILFEQQKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIVKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q++++  L NP  I++       +       A Y  Y  +   + +
Sbjct: 181 RQTIMFSATMPAKIQQLAKTILNNPAEIKLAVSRPADKI----IQAAYVCYENQKLGIIR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L + +  +  IIF + K  V  +  +L+    +V  +H +++Q  R  ++  FK G I 
Sbjct: 237 SLFTDEVPERVIIFASSKIKVKEVTKALKMMKLNVGEMHSDLEQAQREVVMHEFKAGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V NFDVP+ +E+Y+HRIGRT RA   G A T +++++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQSNF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI--PQKSTGFDRRKKNYSS 415
            +IE  +EK++         +  P E  +  ++     NN      K   F  ++ N + 
Sbjct: 357 KSIENFLEKEI-------YKIPVPAELGEAPEYKPRSYNNKRGDSSKRRSFGGKRNNNNG 409

Query: 416 QKSH 419
           +K  
Sbjct: 410 KKRQ 413


>gi|261822185|ref|YP_003260291.1| ATP-dependent RNA helicase RhlE [Pectobacterium wasabiae WPP163]
 gi|261606198|gb|ACX88684.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 476

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 161/458 (35%), Positives = 249/458 (54%), Gaps = 13/458 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGLS  ++ A+ + GY  PTP+Q + IP+VL+  D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFDSLGLSADILRAIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 60  ----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                   +      R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    Q
Sbjct: 61  QLLTSREAQHKGKGRRPVRALILTPTRELAAQIDENVKAYSKYLPLRSLVVFGGVSINPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P
Sbjct: 121 MMKLRGGVDILVATPGRLLDLEHQRAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E +         +  ++    
Sbjct: 181 AKRQNLLFSATFSDEIKALANKLLTNPASVEVVRRNTPSELVTQHVHFVDKRRKRELLSQ 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 ++  +  ++F   K    +L   LEK G +  AIHGN  Q +R + L+NFK+G+
Sbjct: 241 L---IGENNWQQVLVFTRTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANFKDGS 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K
Sbjct: 298 IRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCVDEHK 357

Query: 356 HIDAIEKLIEKKVDWL-----NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            +  IE+L+++++  +       D S    P+              N  P+  +G  R +
Sbjct: 358 LLRDIERLLKREIPRIAVEGYEPDPSIKAEPIVNGRQGNRGGGGARNAAPRAQSGAPRGQ 417

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
                +      + S + ++  +    N     G  G 
Sbjct: 418 SERGERSQGQGERRSAEGNRQPRKAGGNSDSPWGTGGK 455


>gi|73748116|ref|YP_307355.1| ATP-dependent RNA helicase, DEAD [Dehalococcoides sp. CBDB1]
 gi|147668820|ref|YP_001213638.1| DEAD/DEAH box helicase domain-containing protein [Dehalococcoides
           sp. BAV1]
 gi|289432193|ref|YP_003462066.1| DEAD/DEAH box helicase [Dehalococcoides sp. GT]
 gi|73659832|emb|CAI82439.1| ATP-dependent RNA helicase, DEAD [Dehalococcoides sp. CBDB1]
 gi|146269768|gb|ABQ16760.1| DEAD/DEAH box helicase domain protein [Dehalococcoides sp. BAV1]
 gi|288945913|gb|ADC73610.1| DEAD/DEAH box helicase domain protein [Dehalococcoides sp. GT]
          Length = 561

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 141/374 (37%), Positives = 207/374 (55%), Gaps = 6/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F      P V+  V   GY +PTPIQ + IP ++  HDV G+AQTGTGKTA++ LP++
Sbjct: 1   MSFESFNFDPAVMAGVRACGYKEPTPIQAQAIPPIMAGHDVIGLAQTGTGKTAAYALPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          RTL++ PTRELA Q++D+F   G+   +    + GG+  + Q ++L 
Sbjct: 61  QKMLSTPR--GRVRTLVIAPTRELACQISDSFRSLGQRARIRECSIYGGVNMDQQIRRLR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++  PGR+LDH  RG + +  +E L+IDEADRM DMGF P IQ+I   +    QT
Sbjct: 119 SGVDVVVACPGRLLDHIWRGTIDVCGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++K         +   V     T   +     + Y   S +   L   + 
Sbjct: 179 LLFSATMPPEVRK----LTLETQTNPVTVQVGTQSPVSSVSHSVYPVKSHQKTPLLLEIL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K+ +IF   K    NL   + K GF+  ++ GN+ Q  R  ++  F+ G  +++V
Sbjct: 235 KTVETKSVLIFARTKYGAENLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + HV N+D+P+  E+Y HRIGRTGR  R G+AF+LV   D   +  I
Sbjct: 295 ATDIAARGLDIDHISHVINYDMPDSPEDYTHRIGRTGRFDRTGQAFSLVTGRDGDMVRDI 354

Query: 361 EKLIEKKVDWLNGD 374
           ++L+   +  L  D
Sbjct: 355 QRLLSSPIQRLRVD 368


>gi|284929206|ref|YP_003421728.1| superfamily I DNA/RNA helicaseI [cyanobacterium UCYN-A]
 gi|284809650|gb|ADB95347.1| DNA/RNA helicase, superfamily II [cyanobacterium UCYN-A]
          Length = 477

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 146/369 (39%), Positives = 223/369 (60%), Gaps = 5/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS   V  + + G+  PT IQ K IPL+L+ HDV G +QTGTGKTA++ LP+L
Sbjct: 3   ISFENLGLSETRVNKLKELGFENPTEIQEKAIPLMLEGHDVLGQSQTGTGKTAAYSLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V++   LIL PTRELA QVA+  + +     L +  + GG   + Q + LE
Sbjct: 63  EKVDIQDPSVQV---LILTPTRELAQQVAEALKDFTVRRRLYILTVYGGQSIDRQIRSLE 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++D   R KL+++++   V+DEAD ML MGFI  ++ I    P +R T
Sbjct: 120 RGVQIVVGTPGRVIDLIERKKLILDSLRWAVLDEADEMLSMGFIDDVKTILKKTPESRST 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM  E++++   FL++P  I V    +    IE         +SK+ A   Q + 
Sbjct: 180 ACFSATMPREIRELVNQFLKSPVTISVERTQAAPTRIEQNIYMVPRGWSKRKA--LQPVL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  ++ IIF   K+   +L   L++ G  V   HGN+ Q  R +++  F++G I+L+V
Sbjct: 238 EIEDPESAIIFVRTKQTASDLTTRLQEIGHCVDEYHGNLSQSQRERLVHRFRDGRIKLVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+ +E YIHRIGRTGRAG+ GKA ++V   D + I  I
Sbjct: 298 ATDIAARGLDVEGLSHVINYDLPDNSETYIHRIGRTGRAGKTGKAISIVESADRRMIRQI 357

Query: 361 EKLIEKKVD 369
           E+ + +K+D
Sbjct: 358 ERKLRQKID 366


>gi|254521627|ref|ZP_05133682.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14]
 gi|219719218|gb|EED37743.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14]
          Length = 648

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 152/468 (32%), Positives = 248/468 (52%), Gaps = 29/468 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LGLS  V+ AV   GY  P+PIQ  TIP +L+  DV G AQTGTGKTA+F LP+L
Sbjct: 9   LQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + ++  + +   P+ LIL PTRELA QVA+ F+ Y         L +  G P+  Q   L
Sbjct: 69  SNIDLQQIK---PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSAL 125

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG  +++ TPGR++DH +R  L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ
Sbjct: 126 RRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQ 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  +++++++ +LQ+P  + +   ++T+  I   +      +          +
Sbjct: 186 VALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALTRILEV 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   IIF   K     L   L+ +G +  AI+G++ Q  R + ++  KEG + ++
Sbjct: 246 EPFDAM---IIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDIL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A       +   +  
Sbjct: 303 VATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGMLRQ 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH--ARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE+   + ++ +        P +E ++  + N    R    +      F R+       +
Sbjct: 363 IERATRQPIEEMQ------LPSVEAVNDTRINKFTTRITETLGAGGLDFYRQLLERFENE 416

Query: 418 SHIPLKE-SEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            ++P  E +  ++K+              +G+ P  + P  R    ++
Sbjct: 417 QNVPAIEVAAALAKM-------------LQGDTPFLLQPPVRAPREER 451


>gi|187934290|ref|YP_001887690.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722443|gb|ACD23664.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B str.
           Eklund 17B]
          Length = 432

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 159/423 (37%), Positives = 244/423 (57%), Gaps = 15/423 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL +   +  A+ +AGY  PTPIQ ++IP +L   D  G AQTGTGKTA+F +P+L
Sbjct: 1   MLFKDLNIIEPIQRALTEAGYTNPTPIQEQSIPSLLNGKDFLGCAQTGTGKTAAFAIPVL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             + + + +   PRT+   IL PTRELA Q+ +NF  Y K+ N+   ++ GG+  + Q +
Sbjct: 61  QNIAQNQKKSDKPRTIKALILAPTRELAIQIEENFTLYSKHTNIKNTVIFGGVSQKPQTR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+LI TPGR+LD  ++  + ++N++  V+DEADRM DMG +  ++ I + +P  
Sbjct: 121 ILGEGVDILIATPGRLLDLIDQKYIDLSNVKHFVLDEADRMFDMGMVRDVKKIVAKLPKV 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  E++ +  + L++P ++EV   SST +TI         +  K   +   
Sbjct: 181 RQNLLFSATMPSEVKSLVNSILKDPVKVEVAPVSSTIDTITQGVYFVTKKDKKSLLVHLL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                +++K+ ++F   K    N+   L K G    AIHGN  Q +R   LSNFKEG I+
Sbjct: 241 ---KDESIKSLLVFSRTKYGANNIVKDLAKTGTESQAIHGNKSQNARQLALSNFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+  + HV N+D+P+  E Y+HRIGRTGRAG  G A +    ++   +
Sbjct: 298 VLVATDIAARGIDVDGLSHVINYDLPDVPETYVHRIGRTGRAGNSGVAISFCDVDEKSAL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-KKNYSSQ 416
             IEK I K +  +       N   E+I I +    RK     +K+T  +++ K+N+   
Sbjct: 358 KDIEKTIGKNIPVMK------NVEFERIAITREPAQRKE--ADKKTTDANKKPKRNWYGD 409

Query: 417 KSH 419
           K  
Sbjct: 410 KRR 412


>gi|90410084|ref|ZP_01218101.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90329437|gb|EAS45694.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 420

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 159/427 (37%), Positives = 241/427 (56%), Gaps = 8/427 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F++LGLS  ++ AV + GY  PTPIQ K IP++L   ++   AQTGTGKTASFVLP +
Sbjct: 1   MSFSNLGLSDPILKAVAELGYETPTPIQEKAIPVILTGKNLIAAAQTGTGKTASFVLPLL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +    R +  R LIL PTRELA QV  N  +Y K+ +LT   + GG+ ++ Q ++L
Sbjct: 61  EKFSDMPPIRAKRIRALILVPTRELAVQVDANITQYSKHLSLTSLAMYGGVDYKDQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  L  + +E+LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IDGVDILVATPGRLLDMYTQRALHFDELEVLVLDEADRMLDMGFIEDINKILERLPKERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++D+++ ++       +R    + S    T              K + L   +
Sbjct: 181 NLLFSATLSDQVRVLA---KTAVERPVEISVSPENTTTPKIDQWLITVDKDKKSALLSHM 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  +IF   K     L   LEK+G    AIHG   Q  R K+L++FK G + L+
Sbjct: 238 IKENEWKQALIFIQTKHGAAKLVGQLEKRGIVAEAIHGGRSQAVREKLLNDFKSGELGLL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI D+  V N+D+P++A++Y+HRIGRTGRAG  G+A + V+++D +H+ A
Sbjct: 298 VATGIAARGIDIDDLTRVINYDLPDQADDYVHRIGRTGRAGATGEAISFVSRDDFRHLCA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE  +   +  +  ++    P  E + ++  N+      I  +   F  ++ +     SH
Sbjct: 358 IETRLGHLI--VRKEIEGFVPQKE-VPVSILNYVP-ETKIAARRKNFKNKQNSQDKPTSH 413

Query: 420 IPLKESE 426
              K   
Sbjct: 414 AIPKGRR 420


>gi|323494189|ref|ZP_08099304.1| ATP-dependent RNA helicase RhlB [Vibrio brasiliensis LMG 20546]
 gi|323311583|gb|EGA64732.1| ATP-dependent RNA helicase RhlB [Vibrio brasiliensis LMG 20546]
          Length = 434

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 142/430 (33%), Positives = 214/430 (49%), Gaps = 11/430 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL P++   +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADLGLHPQITEGLEKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTAAFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 E    +   PR +I+ PTRELA Q+ ++ E    +  +  AL  GG  ++ Q  
Sbjct: 70  HLLTTSEHEGRKPNQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KLE G DVLI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLEDGVDVLIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           ++ L    + T   +     F       E        +T        +   ++    L Q
Sbjct: 190 KERLNMLFSATLSYRVQELAFEHMHN-PEHVVVEPEVKTGHRIQEELFYPSNEHKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R +IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKRERILDQFTRGEVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   ++   ++
Sbjct: 309 LLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAINL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF-DRRKKNYSSQ 416
             IE+ IE  +   + D S+L       D+      R N P  Q+ T     R  N  S 
Sbjct: 369 PPIEEYIEHTIPVSDYDPSALIQ-----DLPAPIRMRSNRPQQQRRTNTGGSRSGNRRSN 423

Query: 417 KSHIPLKESE 426
               P ++ +
Sbjct: 424 HRSRPRQQKD 433


>gi|217419732|ref|ZP_03451238.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           576]
 gi|217397036|gb|EEC37052.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           576]
          Length = 485

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 163/399 (40%), Positives = 234/399 (58%), Gaps = 9/399 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                   + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            ++     
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHA 393
           +  IE+LI++++    + G     N   E I       A
Sbjct: 358 LRDIERLIKREIPQQVIPGFEPDPNAKPEPIQRRGQRGA 396


>gi|167909652|ref|ZP_02496743.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           112]
          Length = 419

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 163/399 (40%), Positives = 234/399 (58%), Gaps = 9/399 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                   + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            ++     
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHA 393
           +  IE+LI++++    + G     N   E I       A
Sbjct: 358 LRDIERLIKREIPQQVIPGFEPDPNAKPEPIQRRGQRGA 396


>gi|167903972|ref|ZP_02491177.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           NCTC 13177]
          Length = 430

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 163/399 (40%), Positives = 234/399 (58%), Gaps = 9/399 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                   + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            ++     
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHA 393
           +  IE+LI++++    + G     N   E I       A
Sbjct: 358 LRDIERLIKREIPQQVIPGFEPDPNAKPEPIQRRGQRGA 396


>gi|167892936|ref|ZP_02480338.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           7894]
          Length = 416

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 163/399 (40%), Positives = 234/399 (58%), Gaps = 9/399 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                   + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            ++     
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHA 393
           +  IE+LI++++    + G     N   E I       A
Sbjct: 358 LRDIERLIKREIPQQVIPGFEPDPNAKPEPIQRRGQRGA 396


>gi|167844421|ref|ZP_02469929.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           B7210]
          Length = 427

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 163/399 (40%), Positives = 234/399 (58%), Gaps = 9/399 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                   + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            ++     
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHA 393
           +  IE+LI++++    + G     N   E I       A
Sbjct: 358 LRDIERLIKREIPQQVIPGFEPDPNAKPEPIQRRGQRGA 396


>gi|167737241|ref|ZP_02410015.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           14]
 gi|167822848|ref|ZP_02454319.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           9]
          Length = 414

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 163/399 (40%), Positives = 234/399 (58%), Gaps = 9/399 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                   + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            ++     
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHA 393
           +  IE+LI++++    + G     N   E I       A
Sbjct: 358 LRDIERLIKREIPQQVIPGFEPDPNAKPEPIQRRGQRGA 396


>gi|167718208|ref|ZP_02401444.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           DM98]
          Length = 434

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 163/399 (40%), Positives = 234/399 (58%), Gaps = 9/399 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                   + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            ++     
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHA 393
           +  IE+LI++++    + G     N   E I       A
Sbjct: 358 LRDIERLIKREIPQQVIPGFEPDPNAKPEPIQRRGQRGA 396


>gi|126440586|ref|YP_001057787.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           668]
 gi|126220079|gb|ABN83585.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           668]
          Length = 485

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 163/399 (40%), Positives = 234/399 (58%), Gaps = 9/399 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                   + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            ++     
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHA 393
           +  IE+LI++++    + G     N   E I       A
Sbjct: 358 LRDIERLIKREIPQQVIPGFEPDPNAKPEPIQRRGQRGA 396


>gi|76811549|ref|YP_332327.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
 gi|126454229|ref|YP_001065030.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1106a]
 gi|242316165|ref|ZP_04815181.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1106b]
 gi|254196606|ref|ZP_04903030.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           S13]
 gi|254260651|ref|ZP_04951705.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1710a]
 gi|76581002|gb|ABA50477.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
 gi|126227871|gb|ABN91411.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1106a]
 gi|169653349|gb|EDS86042.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           S13]
 gi|242139404|gb|EES25806.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1106b]
 gi|254219340|gb|EET08724.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1710a]
          Length = 485

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 163/399 (40%), Positives = 234/399 (58%), Gaps = 9/399 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                   + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            ++     
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHA 393
           +  IE+LI++++    + G     N   E I       A
Sbjct: 358 LRDIERLIKREIPQQVIPGFEPDPNAKPEPIQRRGQRGA 396


>gi|53718338|ref|YP_107324.1| putative ATP-dependent RNA helicase 1 [Burkholderia pseudomallei
           K96243]
 gi|53724700|ref|YP_102079.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
 gi|67641488|ref|ZP_00440266.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei GB8 horse 4]
 gi|126450332|ref|YP_001081986.1| putative ATP-dependent RNA helicase rhlE [Burkholderia mallei NCTC
           10247]
 gi|134279667|ref|ZP_01766379.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           305]
 gi|226196769|ref|ZP_03792349.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           Pakistan 9]
 gi|52208752|emb|CAH34688.1| putative ATP-dependent RNA helicase 1 [Burkholderia pseudomallei
           K96243]
 gi|52428123|gb|AAU48716.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
 gi|126243202|gb|ABO06295.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10247]
 gi|134248867|gb|EBA48949.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           305]
 gi|225931300|gb|EEH27307.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           Pakistan 9]
 gi|238522432|gb|EEP85876.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei GB8 horse 4]
          Length = 485

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 163/399 (40%), Positives = 234/399 (58%), Gaps = 9/399 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                   + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            ++     
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHA 393
           +  IE+LI++++    + G     N   E I       A
Sbjct: 358 LRDIERLIKREIPQQVIPGFEPDPNAKPEPIQRRGQRGA 396


>gi|260913800|ref|ZP_05920275.1| ATP-dependent RNA helicase DeaD [Pasteurella dagmatis ATCC 43325]
 gi|260632113|gb|EEX50289.1| ATP-dependent RNA helicase DeaD [Pasteurella dagmatis ATCC 43325]
          Length = 610

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 139/373 (37%), Positives = 222/373 (59%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 6   ITFNDLGLPEFLLDAVSDLGFETPSPIQQTCIPYLLDGNDVLGMAQTGSGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E++ K    T  + +  G  ++ Q + L
Sbjct: 66  AQIDL---DKKYPQMLVMAPTRELAIQVADACEQFCKYAKNTRIVTLYGGQRYDIQLRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  RG L ++N+  +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 KQGAQVVVGTPGRILDHIRRGTLDLSNLRFMVLDEADEMLRMGFIDDVETVMAELPEEHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+++PK I++ +  +T   I       +              
Sbjct: 183 TALFSATMPEPIRRITKRFMKDPKEIKIKSTQTTNPDITQSCWYVHGFRKNDA---LLRF 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 240 LEVENFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLERLRNGSLDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 300 VATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRTGRALLFVEPRERRLLRN 359

Query: 360 IEKLIEKKVDWLN 372
           IE L +K +  + 
Sbjct: 360 IEHLTKKPITEVE 372


>gi|254363222|ref|ZP_04979270.1| ATP-dependent RNA helicase [Mannheimia haemolytica PHL213]
 gi|153095119|gb|EDN75666.1| ATP-dependent RNA helicase [Mannheimia haemolytica PHL213]
          Length = 444

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 133/381 (34%), Positives = 212/381 (55%), Gaps = 4/381 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F +L LSP+++ A+   GY +PT IQ  TIP  L+  D+ G A TGTGKTA+F+LP +
Sbjct: 5   MTFEELDLSPQLLKALAHKGYNRPTAIQQATIPAALEGRDLLGSAPTGTGKTAAFLLPAI 64

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QVA+  +   K   L++A + GG+ ++   +  
Sbjct: 65  QHLLDYPRRKPGAPRILILTPTRELAMQVAEQAQALAKFTQLSIATITGGVAYQNHGEVF 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++ +          +E+L+ DEADRML MGF    + I +   + + 
Sbjct: 125 NKNQDIVVATPGRLMQYIKEENFDCRAVEVLIFDEADRMLQMGFGQDAEKIAAETRWRKH 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT+  EL +     L N     V+   S  E  +      +A   +    L   +
Sbjct: 185 TWLFSATLEGELLEDFAERLLNDPIK-VDAEPSRRERKKIQQWYYHADNVEHKTKLLARI 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+ +++  I+F  ++++V  L  +L K+G     + G + Q  R + ++  KEG + ++
Sbjct: 244 ISEFSVERAIVFVRRREDVRELSETLRKRGIRSTYLEGEMAQTQRNQAINRLKEGVVNVL 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI D+  V N+D+P  A+ Y+HRIGRT RAG+ G A +LV   D K +  
Sbjct: 304 VATDVAARGIDIDDIDFVLNYDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGK 363

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           I++  E+ +      +  L P
Sbjct: 364 IKRYTEEVLK--PRIIEGLEP 382


>gi|162464317|ref|NP_001105848.1| putative RH2 protein [Zea mays]
 gi|84322402|gb|ABC55720.1| putative RH2 protein [Zea mays]
 gi|146217167|gb|ABQ10647.1| RNA helicase 2 [Zea mays]
 gi|194700534|gb|ACF84351.1| unknown [Zea mays]
          Length = 407

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 200/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G+   ++  +   G+ KP+ IQ + +  ++   DV   AQ+GTGKT+   L +  
Sbjct: 35  SFDQMGIKDDLLRGIYGYGFEKPSAIQQRAVLPIINGRDVIAQAQSGTGKTSMISLTVCQ 94

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I++     V+    LIL PTRELA+Q        G + N+ V   IGG       ++LE 
Sbjct: 95  IVDTAVREVQA---LILSPTRELASQTERVMLAIGDHLNVQVHACIGGKSIGEDIRRLEN 151

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML  GF   I ++   +P   Q +
Sbjct: 152 GVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDEADEMLSRGFKDQIYDVYRYLPPELQVV 211

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+  P RI V     T E I+  FVA   +  K   L       
Sbjct: 212 LISATLPHEILEMTSKFMTEPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL--YD 269

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   +    F+V A+HG++ Q+ R  I+  F+ G  ++++ 
Sbjct: 270 TLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSAMHGDMPQQERDAIMGEFRSGATRVLIT 329

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V K+DI+ +  IE
Sbjct: 330 TDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRKDDIRILRDIE 389

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 390 QYYSTQIDEMPMNVADL 406


>gi|74311340|ref|YP_309759.1| ATP-dependent RNA helicase RhlE [Shigella sonnei Ss046]
 gi|73854817|gb|AAZ87524.1| putative ATP-dependent RNA helicase [Shigella sonnei Ss046]
 gi|323165715|gb|EFZ51501.1| putative ATP-dependent RNA helicase rhlE [Shigella sonnei 53G]
          Length = 454

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 233/391 (59%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDYLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKID 386
             IEKL++K++    + G     +   E I 
Sbjct: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388


>gi|313900312|ref|ZP_07833806.1| ATP-dependent RNA helicase RhlE [Clostridium sp. HGF2]
 gi|312954861|gb|EFR36535.1| ATP-dependent RNA helicase RhlE [Clostridium sp. HGF2]
          Length = 437

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 165/439 (37%), Positives = 251/439 (57%), Gaps = 8/439 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L ++  ++ AV + GYV PTPIQ + IP  LQ  D+ G AQTGTGKTA+F +P +
Sbjct: 1   MKFQTLHITEPILKAVKEQGYVDPTPIQEQAIPYALQGRDILGCAQTGTGKTAAFSIPTI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+K   +    R+LI+ PTRELA Q+ +N   Y +   +  A++ GG+P + Q + L+
Sbjct: 61  QLLKKHYKQS--IRSLIVTPTRELAIQIQENITAYAQYTTIRSAVIFGGVPQKPQERILK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGR+ D   +G + +++IEI ++DEADRMLDMGF+P ++ I + +P  +QT
Sbjct: 119 AGVDILVATPGRLNDLIQQGIIDISHIEIFILDEADRMLDMGFLPDVKRIIAKLPKRKQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++++ L  P  IEV   S+T E I+                L   L 
Sbjct: 179 LFFSATMPSEIRKLAQSLLHEPVSIEVTPASTTVEKIDQSLYYVDKA---NKKRLLLKLL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++ ++N ++F   K N   L   L + G +   IHGN  Q +R + L  FKEG  +++V
Sbjct: 236 QKNRVQNALVFTRTKSNANRLAKYLNENGVTSGVIHGNKSQNARQQALLQFKEGKSRVLV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HVFNFD+PN AE Y+HRIGRTGRAGR G A       + +++  I
Sbjct: 296 ATDIAARGIDVQELSHVFNFDIPNEAEVYVHRIGRTGRAGRQGCAIAFSDCNEAEYVKNI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EKLI   +  +      +   LE    AQ  + R+  P  + S     R +N S+   H 
Sbjct: 356 EKLIRMHIPVVEDREFPMRN-LEPAASAQSQNRRRQKPAAKPSA--SNRSENRSAAVKHQ 412

Query: 421 PLKESEKISKLQQDIQEND 439
               + K +  ++  Q   
Sbjct: 413 TSAAAPKRNNRRRRPQSQK 431


>gi|224824946|ref|ZP_03698052.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224602617|gb|EEG08794.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 438

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 145/385 (37%), Positives = 229/385 (59%), Gaps = 7/385 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M FADLGL+P +  A+  AGY  PTP+Q  +IP  L  HD+   AQTG+GKTA+F+LP +
Sbjct: 1   MHFADLGLAPAITSALDAAGYTTPTPVQAASIPAALAGHDLLVSAQTGSGKTAAFLLPSL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
             + E+     + PR L+L PTRELA QV  N  +YG          L+GG  F  Q + 
Sbjct: 61  QKLTERSTGSGQGPRILVLTPTRELAQQVEKNATEYGSQLRWLRTVCLVGGASFGYQIRA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           + R  D+++ TPGR++DH   G++  + +E+L++DEADRMLDMGFI  I+ I    P +R
Sbjct: 121 MARPVDIMVATPGRLMDHMRSGRIDFSRLEMLILDEADRMLDMGFIEDIETIVKATPDSR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT+   + K+++   ++P+RIE+    +     EH   A   ++ ++       
Sbjct: 181 QTVLFSATLDGTVGKLAQKLTRDPQRIEIAREETGGNIEEHLLYADDNRHKERL---LDH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +      +IF   K     L   L  QG++   +HG++ Q  R + L++ + G +++
Sbjct: 238 ILKEAGFDQAVIFTATKIGSEELADKLSDQGYAAACLHGDMPQNWRNRTLNDLRRGRVRI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A TL   ++   + 
Sbjct: 298 LVATDVAARGIDVPTITHVVNYDLPKQAEDYVHRIGRTGRAGRDGVAITLAESKEFHKVR 357

Query: 359 AIEKLIEKKVDW--LNGDLSSLNPP 381
            IE+ +++++    + G   +  PP
Sbjct: 358 RIEQYLKRQITEGVIEGMEPTRRPP 382


>gi|332253514|ref|XP_003275885.1| PREDICTED: probable ATP-dependent RNA helicase DDX49 [Nomascus
           leucogenys]
          Length = 483

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 159/472 (33%), Positives = 237/472 (50%), Gaps = 31/472 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  LSE---DPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 123 ADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI---QNITSLVPFTR 178
             V+I TPGR      +     +  I  LV+DEADR+L+ G   +    + I + VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQ 237
           QTLLFSAT+TD L+++       P   E   P ST E ++  ++             L Q
Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQ 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             Q +    + IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK    +
Sbjct: 241 CFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI  +
Sbjct: 301 ILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLV 360

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK------ 411
            AIE+ I+KK++  + + + +   L      Q N  R+   I  ++  FD +K+      
Sbjct: 361 HAIEEQIKKKLEEFSVEEAKVLQIL-----TQVNVVRRECEIKLEAAHFDEKKEINKRKQ 415

Query: 412 ------------NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
                          ++ + I  K      K+++ ++   A   G +G  P 
Sbjct: 416 LILEGKDPDLEAKRKAELAKIKQKNRRFKEKVEETLKRQKAGKAGHKGRPPR 467


>gi|309792104|ref|ZP_07686577.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
           DG6]
 gi|308225848|gb|EFO79603.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
           DG6]
          Length = 422

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 150/426 (35%), Positives = 231/426 (54%), Gaps = 15/426 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+FAD  L P ++  V   G+ +PTPIQ +TIPL L   ++ G+AQTGTGKTA+FVLP+L
Sbjct: 1   MNFADFALHPALMQNVSAQGFTQPTPIQAQTIPLALSGQNLIGLAQTGTGKTAAFVLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L + R R    + LI+ PTRELA Q+ D          L  A + GG+  E Q + L 
Sbjct: 61  QRLLQNRQRGT--QALIVTPTRELAEQINDTIRVLAHGTGLRSAPIYGGVGMEPQERALR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G ++++  PGR++DH  RG   ++ +++LV+DEADRMLDMGF+P IQ I S +P  RQT
Sbjct: 119 AGVEIVVACPGRLIDHLGRGSARLDGVQMLVLDEADRMLDMGFLPAIQRILSALPTRRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+  ELQ+++     + K +++             +     + +     L     
Sbjct: 179 MLFSATLPAELQQLAATTAPHAKLVQIGLVRPAHTITHAIYPVPPHRKTALLLDLLH--- 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F   K     L   + ++G S   +H N  Q  R   L  F++G  +++V
Sbjct: 236 -KANSGSVLVFTRTKHRANRLLQQIAREGHSAAVLHSNKSQNQRQLALDGFRDGRFRILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  + YIHRIGRTGRA R G AFTLV  ED   +  I
Sbjct: 295 ATDIAARGLDVERISHVINYDIPDTPDAYIHRIGRTGRATRSGDAFTLVTPEDASQVRQI 354

Query: 361 EKLIEKKVDW-------LNGDLSSLNPPLEKIDIAQH--NHARKNNPIPQKSTGFDRRKK 411
           E+ I   ++         N  + ++N         +H   +A + +  P+ S G   R+ 
Sbjct: 355 ERAIGAPLERRQLAGFDYNAQVPAVNLDERPPRPPRHENRNAPRTSVPPRSSAGNAPRRD 414

Query: 412 NYSSQK 417
              +++
Sbjct: 415 QRPARR 420


>gi|156098189|ref|XP_001615127.1| eukaryotic initiation factor [Plasmodium vivax SaI-1]
 gi|148804001|gb|EDL45400.1| eukaryotic initiation factor, putative [Plasmodium vivax]
          Length = 388

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 193/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++G+   ++  +   G+ KP+ IQ + I  +L   DV   +Q+GTGKT  F +  L 
Sbjct: 16  SFENIGIDEGLLRGIYAYGFEKPSAIQQRGIKPILSGRDVILQSQSGTGKTCVFAVGALN 75

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + +  +  ++    IL PTRELA Q            ++T+   IGG       K L  
Sbjct: 76  CVNRNLSETQVI---ILSPTRELAEQTQKVCLALADYIHVTIYCCIGGKKMSDDIKALSN 132

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGRI    N   L    I+ LVIDEAD ML+ GF   + +I   +    Q +
Sbjct: 133 GVHIISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPNTQIV 192

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+  P +I V     T E I+  FV+   +  K        L  
Sbjct: 193 LSSATLPQEVLEITNKFMHRPVKILVKRDELTLEGIKQFFVSIEKEQWKYET--LADLYE 250

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   ++FCN K  V  L   +++  F+VC +H  + Q  R  I+  F++   +++++
Sbjct: 251 SLTITQAVVFCNTKLKVDWLTKKMQEANFTVCKMHAGMSQSERDDIMLKFRQCKFRVLIS 310

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+  RGLD+ +V  V N+D+PN  E+YIHRIGR+GR GR G A   V  +DIK +  IE
Sbjct: 311 TDIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIE 370

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 371 QYYSTQIDEMPMNITEL 387


>gi|148977343|ref|ZP_01813957.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3]
 gi|145963456|gb|EDK28720.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3]
          Length = 646

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 134/378 (35%), Positives = 210/378 (55%), Gaps = 7/378 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L L+  ++ A+   G+V PTPIQ   IPL+L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             +   + +   P+ +I+ PTRELA QVA   +  G++      + I  G     Q + L
Sbjct: 66  NKINLNQHK---PQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVIEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR+ D   R +L ++     V+DEAD ML MGF+  +  I    P + Q
Sbjct: 123 SRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++ + + +L+NP +++V   + T + +   F         +        
Sbjct: 183 RVLFSATMPPMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQNFWVVKGVEKDEAMSRLLET 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 243 EET---DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVDWLNGDLSS 377
           IE++ +  ++ +   L  
Sbjct: 360 IERVTKSTMEEIQLPLRD 377


>gi|17545258|ref|NP_518660.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
 gi|17427549|emb|CAD14067.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
           GMI1000]
          Length = 540

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 165/440 (37%), Positives = 250/440 (56%), Gaps = 18/440 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY +PTPIQ + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 61  TI--------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                     ++         R L+L PTRELAAQV ++   YGK   L   ++ GG+  
Sbjct: 61  HRLSAVQPNKVQTPHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q   L+RG D+++ TPGR+LDH  +  + +++IE+LV+DEADRMLDMGFI  I+ I +
Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           ++P  RQ LLFSAT +D+++ +++  L  P  IEV   ++TAET+E        +  ++ 
Sbjct: 181 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKREL 240

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                 L S +     ++F   K     L   L + G    AIHGN  Q +R + LS FK
Sbjct: 241 ---LAKLVSDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALSEFK 297

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT++++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  +
Sbjct: 298 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 357

Query: 353 DIKHIDAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           +   +  IE+LI++++    L G         E I      + R +   P++  G  +  
Sbjct: 358 EHGLLRDIERLIKRELPRTVLAGFEPDPTIAPEPIP-----NGRNSARAPRQGGGRSQPP 412

Query: 411 KNYSSQKSHIPLKESEKISK 430
           +  +   +    +   +  +
Sbjct: 413 RQAAGNAAPREPRAPREPRR 432


>gi|301155361|emb|CBW14827.1| ATP-dependent RNA helicase [Haemophilus parainfluenzae T3T1]
          Length = 442

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 140/402 (34%), Positives = 217/402 (53%), Gaps = 9/402 (2%)

Query: 1   MD---FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           M+   F +  LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+L
Sbjct: 1   MNLSPFEEFDLSPELLKALEKKGYTRPTAIQLEAIPAAMEERDVLGSAPTGTGKTAAFLL 60

Query: 58  P-MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           P +  +L+  R +   PR LIL PTRELA QVA+  E+  +  +L +A + GG+ ++   
Sbjct: 61  PAIQHLLDYPRRKPGAPRILILTPTRELAMQVAEQAEELAQFTHLKIATITGGVAYQNHG 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +      D+++ TPGR+L +          +E+L+ DEADRML MGF    + I +   +
Sbjct: 121 EVFNSNQDIVVATPGRLLQYIKEENFDCRAVEMLIFDEADRMLQMGFGQDAEKIAAETRW 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +QTLLFSAT+  EL       L N     ++   S  E  +      +A  ++    L 
Sbjct: 181 RKQTLLFSATLEGELLVDFAERLLNDPVK-IDAEPSRRERKKINQWYYHADSNEHKIKLL 239

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                 + +  GI+F  ++++V  L  +L K+G     + G++ Q  R   +   K G +
Sbjct: 240 ARFIETEKVSRGIVFVRRREDVRELSETLRKRGIRSTYLEGDMAQTQRNNAIDKLKSGVV 299

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K 
Sbjct: 300 TVLVATDVAARGIDIDDVTHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKL 359

Query: 357 IDAIEKLIEK--KVDWLNGDLSSLNPPL--EKIDIAQHNHAR 394
           +  I++  E+  K   L G      PP   E   +++   AR
Sbjct: 360 LGKIKRYTEELLKARILEGLEPRTKPPKDGEVKSMSKKQKAR 401


>gi|296332826|ref|ZP_06875286.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305673172|ref|YP_003864844.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150106|gb|EFG90995.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411416|gb|ADM36535.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 494

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 148/383 (38%), Positives = 224/383 (58%), Gaps = 8/383 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  LS  ++ A+   G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F +P++
Sbjct: 3   ITFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLV 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + +++ PTRELA QV++   K G++    V  + GG     Q + L+
Sbjct: 63  EKINP---ESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+LDH NR  + +NN+  +V+DEAD ML+MGFI  I++I S VP   QT
Sbjct: 120 KNPHIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +++++E F+  P+ ++V     T   I+           +K       L 
Sbjct: 180 LLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQ---FYLEVQERKKFDTLTRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM  L  FKEG I+++V
Sbjct: 237 DIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFDVP   E+Y+HRIGRTGRAG+ G A T +   +   + AI
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           E+  ++K+D +     +L+  LE
Sbjct: 357 EQTTKRKMDRMK--EPTLDEALE 377


>gi|206559326|ref|YP_002230087.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia
           J2315]
 gi|198035364|emb|CAR51239.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia
           J2315]
          Length = 477

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 231/391 (59%), Gaps = 9/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAE++            ++     
Sbjct: 181 QRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKI 385
           +  IE+LI++++  + + G     N   E I
Sbjct: 358 LRDIERLIKREIPQEVIAGFEPDPNAKPEPI 388


>gi|170734034|ref|YP_001765981.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169817276|gb|ACA91859.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 486

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 231/391 (59%), Gaps = 9/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAE++            ++     
Sbjct: 181 QRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKI 385
           +  IE+LI++++  + + G     N   E I
Sbjct: 358 LRDIERLIKREIPQEVIAGFEPDPNAKPEPI 388


>gi|107023606|ref|YP_621933.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
 gi|116690690|ref|YP_836313.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|105893795|gb|ABF76960.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
           1054]
 gi|116648779|gb|ABK09420.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           HI2424]
          Length = 486

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 159/391 (40%), Positives = 231/391 (59%), Gaps = 9/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAE++            ++     
Sbjct: 181 QRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKI 385
           +  IE+LI++++  + + G     N   E I
Sbjct: 358 LRDIERLIKREIPQEVIAGFEPDPNAKPEPI 388


>gi|172039349|ref|YP_001805850.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142]
 gi|171700803|gb|ACB53784.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142]
          Length = 480

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 149/388 (38%), Positives = 225/388 (57%), Gaps = 7/388 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS   +  +   G+  PT IQ K IPL+L+ HDV G +QTGTGKTA++ LP+L
Sbjct: 3   ISFENLGLSEARINQLQTLGFESPTEIQEKAIPLLLEGHDVLGQSQTGTGKTAAYSLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++    R    + LIL PTRELA QVA+  + +     L +  + GG   E Q + LE
Sbjct: 63  EQIDT---RNSNVQALILTPTRELAQQVAEALKDFSTERRLYILTVYGGQSIERQIRSLE 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++D   R KL+++++   V+DEAD ML MGFI  ++ I    P  R T
Sbjct: 120 RGVQIVVGTPGRVIDLLERKKLVLDSLRWAVLDEADEMLSMGFIDDVKTILRKTPDARNT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM  E++ +   FL++P  + V    +    I+         +SK+ A   Q + 
Sbjct: 180 ACFSATMPREIRDLVNQFLKSPVTVSVERTQAAPTRIDQHLYMVPRGWSKRKA--LQPIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  ++ IIF   K+   +L   L++ G SV   HGN+ Q  R +++  F+EG I+L+V
Sbjct: 238 EIEDPESAIIFVRTKQTASDLTSKLQEIGHSVDEYHGNLSQSQRERLVHRFREGKIKLVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++ HV N+D+P+ +E YIHRIGRTGRAG+ G A +LV   D + +  I
Sbjct: 298 ATDIAARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLVEPIDRRMVRQI 357

Query: 361 EKLIEKKVD--WLNGDLSSLNPPLEKID 386
           EK + +K++   L          LEK+ 
Sbjct: 358 EKRLRQKLETCKLPSRSQVEAKRLEKLQ 385


>gi|313634128|gb|EFS00790.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL N1-067]
          Length = 526

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 153/372 (41%), Positives = 223/372 (59%), Gaps = 6/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++ GL  K+V +V   G+ + TPIQ KTIPL L   D+ G AQTGTGKTA+F LPM+ 
Sbjct: 5   KFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIH 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++    V+    LI+ PTRELA QV++   K   + ++ V  + GG     Q + L++
Sbjct: 65  KIDQKSNSVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NR  L + N+E LV+DEAD ML+MGFI  I+ I   VP  RQTL
Sbjct: 122 FPQIVVGTPGRILDHINRRTLKLENVETLVLDEADEMLNMGFIDDIETILKEVPAERQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++++ E F+ +P+ I +     TA  I          + K+   +   L  
Sbjct: 182 LFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLI---EQFFVKVHEKEKFDVLSRLLD 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  IIF   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA
Sbjct: 239 VQAPELAIIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E
Sbjct: 299 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVE 358

Query: 362 KLIEKKVDWLNG 373
           +  +K++  L  
Sbjct: 359 ETTKKRMQPLQA 370


>gi|315047704|ref|XP_003173227.1| ATP-dependent RNA helicase DHH1 [Arthroderma gypseum CBS 118893]
 gi|311343613|gb|EFR02816.1| ATP-dependent RNA helicase DHH1 [Arthroderma gypseum CBS 118893]
          Length = 508

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 129/450 (28%), Positives = 211/450 (46%), Gaps = 23/450 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +   ++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFEDFYIKRDLMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                   ++   + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 107 ERTNP---KIAKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLN 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   ++     V+DEAD++L   F P I+ + +  P  RQ 
Sbjct: 164 DTVHIIVGTPGRILDLASKGVADLSECTTFVMDEADKLLSPEFTPVIEQLLTFHPKDRQV 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F     R           T+            ++       L 
Sbjct: 224 MLFSATFPIIVKT----FKDKHMRNPYEINLMDELTLRGITQYYAFVEERQKVHCLNTLF 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRYNLYKI 399

Query: 361 EKLIEKKVDWLNGDLSSL----------------NPPLEKIDIAQHNHARKNNPIPQKST 404
           E+ +  ++  +   +                   NPP +    +Q NH R+ +  P    
Sbjct: 400 EQELGTEIQPIPPSIDKKLYVYDTPNTIPRPISNNPPEQHKPTSQENHPRRQSNNPSNGH 459

Query: 405 GFDRRKKNYSSQKSHIPLKESEKISKLQQD 434
           G     + + S+ S+   + S + S   ++
Sbjct: 460 GQYNSNRGHYSRGSYRGGRGSSQRSNNHEN 489


>gi|304403848|ref|ZP_07385510.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304346826|gb|EFM12658.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 546

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 150/394 (38%), Positives = 231/394 (58%), Gaps = 11/394 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+ GL PKV+ A+ + G+ + TPIQ K+IP+ L   D+ G AQTGTGKTA+F +P++ 
Sbjct: 3   TFAEFGLEPKVLQAITELGFEEATPIQSKSIPIALTGSDLIGQAQTGTGKTAAFGIPLIN 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +     R+     LI+ PTRELA QVA+   K  +   L    + GG     Q + L++
Sbjct: 63  KIPVTEDRIVA---LIMTPTRELAIQVAEEIGKLTRYKGLRSLPIYGGQEIGRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH NR  + + +++ +++DEAD MLDMGF+  I +I S+VP  RQT+
Sbjct: 120 HPQIIIGTPGRLLDHINRKTIKLADVQTVILDEADEMLDMGFMEDITSILSMVPAERQTM 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +Q++++ FL NP+ + V     +A  I     A    + ++       L  
Sbjct: 180 LFSATMPPNIQRLAQTFLNNPEHVSVIPKQVSAPLI---DQAYIEVHERQKFEALSRLID 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            ++ +  IIF   K+ V  L  +L+K+G+S   +HG++ Q  R  ++  F++G+I ++VA
Sbjct: 237 MESPELAIIFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HV NFD+P   E+Y+HRIGRTGRAG+ G A++ V   +  H+  IE
Sbjct: 297 TDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPRETDHLHFIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           K+   K+         L    E I+  Q   A +
Sbjct: 357 KVTRHKITRKP-----LPSIAEAIEGKQRVTAER 385


>gi|302205951|gb|ADL10293.1| DEAD-box helicase [Corynebacterium pseudotuberculosis C231]
          Length = 650

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 143/378 (37%), Positives = 224/378 (59%), Gaps = 9/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   ++ AV   G+  P+PIQ +TIP++++ HDV G+AQTGTGKTA+F LP+L+ 
Sbjct: 68  FEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAFALPILSR 127

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     + R P+ LIL PTRELA QVAD+F+ +  +      L I  G  +  Q   L R
Sbjct: 128 I---NVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRR 184

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  +G L ++N+  LV+DEAD ML MGF   I+ I    P  +Q  
Sbjct: 185 GAQIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERILEDTPADKQVA 244

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++S+ ++++P+ I+V + + T   I   F+       +        +  
Sbjct: 245 LFSATMPNGIRRLSKQYMKDPREIQVKSETRTNTNITQRFLNVAH---RNKLDALTRILE 301

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K     +   L  +GFS  AI+G+I Q  R + +   K+G + ++VA
Sbjct: 302 VTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 361

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HVFN+D+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 362 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 421

Query: 362 KLIEKKVDWLNGDLSSLN 379
           +      + +  DL +++
Sbjct: 422 RATNA--ELIEMDLPTVD 437


>gi|300858229|ref|YP_003783212.1| hypothetical protein cpfrc_00811 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685683|gb|ADK28605.1| hypothetical protein cpfrc_00811 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302330505|gb|ADL20699.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 1002]
 gi|308276186|gb|ADO26085.1| DEAD-box helicase [Corynebacterium pseudotuberculosis I19]
          Length = 660

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 143/378 (37%), Positives = 224/378 (59%), Gaps = 9/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   ++ AV   G+  P+PIQ +TIP++++ HDV G+AQTGTGKTA+F LP+L+ 
Sbjct: 68  FEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAFALPILSR 127

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     + R P+ LIL PTRELA QVAD+F+ +  +      L I  G  +  Q   L R
Sbjct: 128 I---NVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRR 184

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  +G L ++N+  LV+DEAD ML MGF   I+ I    P  +Q  
Sbjct: 185 GAQIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERILEDTPADKQVA 244

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++S+ ++++P+ I+V + + T   I   F+       +        +  
Sbjct: 245 LFSATMPNGIRRLSKQYMKDPREIQVKSETRTNTNITQRFLNVAH---RNKLDALTRILE 301

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K     +   L  +GFS  AI+G+I Q  R + +   K+G + ++VA
Sbjct: 302 VTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 361

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HVFN+D+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 362 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 421

Query: 362 KLIEKKVDWLNGDLSSLN 379
           +      + +  DL +++
Sbjct: 422 RATNA--ELIEMDLPTVD 437


>gi|227832855|ref|YP_002834562.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
           700975]
 gi|262182657|ref|ZP_06042078.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
           700975]
 gi|227453871|gb|ACP32624.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 669

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 142/371 (38%), Positives = 227/371 (61%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   V  AV   G+ KP+PIQ +TIP++++  DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 65  FAHLGLPDDVQEAVSKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQ 124

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLER 121
           ++      R P+ L+L PTRELA QVAD+F+ +  +      L I G   +  Q   L R
Sbjct: 125 IDT---EARYPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRR 181

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  +G L ++ +  LV+DEAD ML+MGF   ++ I    P  +Q  
Sbjct: 182 GAQIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVA 241

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++S+ +L NP  + V +   T + I   F+ T  ++          +  
Sbjct: 242 LFSATMPNSIRRLSKQYLNNPAEVTVKSERRTNDNITQRFLLTPHRHKMDAFTRILEVID 301

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D +   I+FC  K    ++  SL++ G++  AI+G+I Q+ R + +   K+G + ++VA
Sbjct: 302 YDAI---IVFCRTKHATEDVADSLKEAGYNAAAINGDIAQQQRERTVDQLKDGRLDILVA 358

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 359 TDVAARGLDVDRITHVVNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 418

Query: 362 KLIEKKVDWLN 372
           ++   +++ ++
Sbjct: 419 RVTNARLEEMD 429


>gi|313676359|ref|YP_004054355.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312943057|gb|ADR22247.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 413

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 162/412 (39%), Positives = 240/412 (58%), Gaps = 6/412 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   ++ A+ +  Y +PT IQ + IPL+LQ++D+   AQTGTGKTA+F +P+L
Sbjct: 1   MRFEELNIIAPILRALKEENYSEPTSIQEQAIPLLLQKNDIMASAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LEK  +  +  ++LIL PTRELA Q+ ++F  YGK  ++   ++ GG+    Q   + 
Sbjct: 61  QHLEKDNSNSKKIKSLILTPTRELAIQIGESFTTYGKYTSIRNTVIFGGVNQNKQTAAIR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+LD  N+G + + +I+  V+DEADRMLDMGFI  I+ + +++P  RQ+
Sbjct: 121 NGVDVLIATPGRLLDLMNQGFISLKDIQYFVLDEADRMLDMGFIHDIKKVIAVLPSKRQS 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM D + ++S   L NPK+I V   SSTAETI+     T     K        + 
Sbjct: 181 LFFSATMPDTIVELSRKILINPKKIAVTPVSSTAETIQQYLYYTNKSTKKDL---LLHIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               M   ++F   K     +   L+K+  S  AIHG+  Q  R K L+ FK+  I+++V
Sbjct: 238 KDSKMDQVLLFDRTKHGADRIVKELKKKNISAAAIHGDKAQNQRQKALTQFKDKEIRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + +V NFD+PN AE Y+HRIGR+GRAG  G + +L   E+  ++  I
Sbjct: 298 ATDIAARGIDIDKLQYVINFDIPNVAETYVHRIGRSGRAGEAGVSISLCEPEENDYLKDI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           EKLI +K+  +     +  P  +K          +     +K   F  RKKN
Sbjct: 358 EKLINQKIPVVK---DNPFPQTDKPMTTAEKKEFEKEKQRRKQEFFANRKKN 406


>gi|258620667|ref|ZP_05715704.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
 gi|258623759|ref|ZP_05718717.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
 gi|262172593|ref|ZP_06040271.1| ATP-dependent RNA helicase RhlB [Vibrio mimicus MB-451]
 gi|258583956|gb|EEW08747.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
 gi|258587182|gb|EEW11894.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
 gi|261893669|gb|EEY39655.1| ATP-dependent RNA helicase RhlB [Vibrio mimicus MB-451]
          Length = 436

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 136/429 (31%), Positives = 213/429 (49%), Gaps = 7/429 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD GL P+V+  +   G++  TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADFGLHPQVIDGLEKKGFIYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                          PR +I+ PTRELA Q+ ++ E       L  AL  GG  ++ Q  
Sbjct: 70  HLLTTPAAEGRAETQPRAIIMAPTRELAIQIYNDAEPLLATTGLKAALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G D+LI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +  L    + T   +     F       E        +T        +   +     L Q
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMNN-PEHVVVEPEQKTGHRIQEELFYPSNDHKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L      V  + G++ Q+ R +IL  F +G + 
Sbjct: 249 TLVEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPL-EKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            AIE  I+  +   + D S+L   L   + +      R+ N    ++ G +R+ +     
Sbjct: 369 PAIESYIDHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNNGGNRKPQQRRP- 427

Query: 417 KSHIPLKES 425
           ++  P KE+
Sbjct: 428 RAPRPKKEA 436


>gi|312797197|ref|YP_004030119.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
 gi|312168972|emb|CBW75975.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
          Length = 555

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 168/411 (40%), Positives = 234/411 (56%), Gaps = 8/411 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 7   MSFNSLGLSEPLVRAVNELGYTTPTPIQRQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 66

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L   RA          IL PTRELAAQV  +  +YGK   L   ++ GG+    Q   
Sbjct: 67  ERLSHSRATSGKIPVRALILTPTRELAAQVEQSVREYGKYLKLRSTVMFGGVGINPQIDA 126

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ +   +P  R
Sbjct: 127 LRRGVDIVVATPGRLLDHLQQRTIDLSSLQILVLDEADRMLDMGFIHDIKRVLKYLPSQR 186

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +DE++ +++N L +P  IEV   ++TAET+            ++       
Sbjct: 187 QNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAETVTQTIYPVDRDRKRELLTHL-- 244

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     ++F   K     L   L K G S  AIHGN  Q +R + LS FK+GT+Q+
Sbjct: 245 -IKAHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQAARTRALSEFKDGTLQV 303

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + + 
Sbjct: 304 LVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAISLVCIDEHQLLT 363

Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
            IE+LI++ +  + + G     N   E I   +   AR   P   +  G  
Sbjct: 364 DIERLIKRTLPREVIAGFEPDPNAKPEPIQ-RRSQPARGAGPREPRRAGIK 413


>gi|162451805|ref|YP_001614172.1| hypothetical protein sce3532 [Sorangium cellulosum 'So ce 56']
 gi|161162387|emb|CAN93692.1| deaD2 [Sorangium cellulosum 'So ce 56']
          Length = 478

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 158/372 (42%), Positives = 232/372 (62%), Gaps = 4/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FADL L   ++ A+   GY  PTPIQ + IP +L+ +D+ G AQTGTGKTA+F LP+ 
Sbjct: 1   MQFADLKLIEPLLRAIEAEGYSAPTPIQQQAIPPILEGNDLLGCAQTGTGKTAAFALPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + + G  R    R L+L PTRELAAQVA++F  YGKN  L  A++ GG+    Q + L
Sbjct: 61  QRLAQSGGPRQGGLRVLVLTPTRELAAQVAESFTTYGKNLGLRTAVVFGGVGQRPQMEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DVL+ TPGR+LD  ++G      ++ LV+DEADRMLDMGFI  I+ + +++P  RQ
Sbjct: 121 RRGVDVLVATPGRLLDLCSQGIAPFGRLDTLVLDEADRMLDMGFIHDIRRVLAMLPERRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  ++ K++ + L++P R+EV   ++TAE I+   V       +    + + +
Sbjct: 181 TLLFSATMPPDILKLANSILRSPVRVEVARIATTAENIDQRVVFVERSDKR---AMLEHV 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                ++  I+F   K     +   L +      AIHGN  Q +R + L++FK+GT  ++
Sbjct: 238 LKDPALRRAIVFTRTKHGANRVVQQLSRARIEAVAIHGNKSQGARERALASFKQGTTSVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI D+ HV N+D+PN  E+Y+HRIGRT RAG  G A +    E+  ++  
Sbjct: 298 VATDIAARGIDIDDISHVINYDLPNIPESYVHRIGRTARAGASGVALSFCDSEERAYLAD 357

Query: 360 IEKLIEKKVDWL 371
           IE+LI+K++  L
Sbjct: 358 IERLIQKRLPLL 369


>gi|153939895|ref|YP_001390000.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str.
           Langeland]
 gi|152935791|gb|ABS41289.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str.
           Langeland]
 gi|295318086|gb|ADF98463.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str.
           230613]
          Length = 425

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 171/425 (40%), Positives = 256/425 (60%), Gaps = 11/425 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   +  A+ + GY K TPIQ ++IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MLFENLEIIKPIQKALKEEGYKKTTPIQERSIPYILDGKDLVGCAQTGTGKTAAFAVPVL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L K +   + PR +   +L PTRELA Q+A++FE YGK  NL  A++ GG+    Q K
Sbjct: 61  QNLSKDKKANKNPRPIRALVLAPTRELAIQIAESFECYGKYINLKSAVIFGGVSQNPQTK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+LI TPGR+LD FN+  + + NIE  V+DEADRMLDMG I  ++ I S +P  
Sbjct: 121 VLREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKV 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  E+ K+ ++ +++P R+EV   SST +TI       Y    K+   L +
Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTI---TQEVYHVRKKQKRALLK 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++++ ++F   K+    +   L + G    AIHGN  Q +R + L+NFKEG I+
Sbjct: 238 HLLKDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HVFN+++P+  E Y+HRIGRTGRAG  G A +    E+ K +
Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357

Query: 358 DAIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS--TGFDRRKKN 412
            AIEKLI K++   +     +  +N    K +   +N  +K +   Q       + R+KN
Sbjct: 358 KAIEKLINKEIPVVEEHPYKIRHINEDEVKKENTNNNSNKKPSSKRQGGNWRYSNNRRKN 417

Query: 413 YSSQK 417
            S+++
Sbjct: 418 NSTKQ 422


>gi|19528517|gb|AAL90373.1| RE50350p [Drosophila melanogaster]
          Length = 399

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L 
Sbjct: 27  TFNAMNLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQ 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+      ++     L PTRELA Q+       G   N+   + IGG       +KL+ 
Sbjct: 87  SLDTTLRETQVLC---LSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDY 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 144 GQHIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 204 LISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 261

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R +I+  F+ G  ++++ 
Sbjct: 262 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLIT 321

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 322 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIE 381

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 382 QYYSTQIDEMPVNVADL 398


>gi|240950103|ref|ZP_04754398.1| ATP-dependent RNA helicase SrmB [Actinobacillus minor NM305]
 gi|240295404|gb|EER46173.1| ATP-dependent RNA helicase SrmB [Actinobacillus minor NM305]
          Length = 445

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 138/439 (31%), Positives = 223/439 (50%), Gaps = 17/439 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F +L LSP+++ A+   GY +PT +Q +TIP  L   D+ G A TGTGKTA+F+LP +
Sbjct: 8   LTFEELDLSPQLLKALHKKGYKRPTSVQAQTIPYALDGRDLLGSAPTGTGKTAAFLLPAI 67

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QVA+  E+  +  NL++A + GG+ ++   +  
Sbjct: 68  QHLLDYPRRKPGAPRILILTPTRELAMQVAEQAEELAEFTNLSIATITGGVAYQNHGEVF 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++ +          +EIL+ DEADRML MGF    + I +   + + 
Sbjct: 128 NKNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT+  EL       L N        PS         +             L   L
Sbjct: 188 TWLFSATLEGELLVDFAERLLNDPVQIEAEPSRRERKKIQQWYYHADNLD-HKTKLLARL 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +   M+  I+F  +++ V  L  +L K+G     + G++ Q  R + ++  KE  + ++
Sbjct: 247 INDFEMEKVIVFVRRREAVRELSDTLRKRGLRSTYLEGDMAQTQRNQAINRLKENVVNVL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++D+AARG+DI DV  V NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D K +  
Sbjct: 307 VSTDVAARGIDIDDVDFVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGK 366

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           I++  E+ +      +  L P             R   P   +     +++K    Q+  
Sbjct: 367 IKRYTEEPLK--PRIIEGLEP-------------RTKAPKDGELNSKTKKEKARIKQRKE 411

Query: 420 IPLKESEKISKLQQDIQEN 438
              + ++  +K++    +N
Sbjct: 412 AKKEAAKAKTKVRHKDTKN 430


>gi|78042906|ref|YP_359101.1| DEAD-box ATP dependent DNA helicase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995021|gb|ABB13920.1| ATP-dependent RNA helicase, DEAD box family [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 430

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 155/394 (39%), Positives = 228/394 (57%), Gaps = 12/394 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LGL   ++ AV D G+  PTPIQ + IPL+L+ H++ G A TGTGKTA+++LP+L 
Sbjct: 3   EFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++G+      + LI+ PTRELA QVAD   K GK   +    + GG   E Q + L +
Sbjct: 63  RIQRGKKA----QVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQ 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G +V++ TPGRILDH  R       I+I+++DEAD MLDMGFI  I+ I + +   +QTL
Sbjct: 119 GVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTL 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ + + FL   K +         +T+       Y     +       + +
Sbjct: 179 LFSATLPAPIKTIIKKFLGGYKTV---KLVGREKTVPAIRQVYYELPETEKIEGLVSILN 235

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I+FC  KK V  +   L  +G++   +HG++ QR R + + +FK G  +L+VA
Sbjct: 236 SELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVA 295

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIPDV HV NFD+P   E+YIHRIGRTGRAGR GKA TL+   + K + AIE
Sbjct: 296 TDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIE 355

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           + I K++         L  P++  +      A+K
Sbjct: 356 EAINKRLKR-----EILPEPVDLEEARFKKIAKK 384


>gi|34541680|ref|NP_906159.1| DEAD-box ATP dependent DNA helicase [Porphyromonas gingivalis W83]
 gi|34397998|gb|AAQ67058.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Porphyromonas
           gingivalis W83]
          Length = 427

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 135/420 (32%), Positives = 215/420 (51%), Gaps = 9/420 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L  +V+  +    +++ TP+Q  TIP +L+  DV   AQTGTGKTA+++LP+L
Sbjct: 1   MRFDELNLGDEVLDGLDAMNFIETTPVQAATIPPILEGRDVIACAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  G     +   +I+ PTRELA Q+    E +     ++   + GG    A  ++  
Sbjct: 61  DRLSAGEFASDVVNAVIMAPTRELAQQIDQQVEGFSYFMPVSAVAIYGGTDGVAWEQQRR 120

Query: 121 RGAD---VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             A    ++I TPGR++ H N G   ++++   V+DEADRMLDMGF   I  I   +P +
Sbjct: 121 GMAMGADIVIATPGRLISHLNLGSADLSHVSYFVLDEADRMLDMGFFDDIMQIYKQLPSS 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            QT++FSATM  +++K       +  R  +    + +   E    + Y  +  +   + +
Sbjct: 181 CQTVMFSATMPPKIRK----LAASILRDPIEVEIAISRPPESIMQSAYICHEAQKLPILR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  Q   K  IIF + K  V  L  +L K GF+V  +H +++Q  R +++ +FK G + 
Sbjct: 237 KLFEQSAPKRTIIFASAKLKVRELTSTLRKMGFNVADMHSDLEQSQREQVMRDFKNGYVD 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
           ++VA+D+ ARG+DI ++  V N+D+P+  E+Y+HRIGRT R     G A T V++E+   
Sbjct: 297 VLVATDIVARGIDIDNIRVVINYDIPHDPEDYVHRIGRTARGTNGEGLAITFVSEEEQSD 356

Query: 357 IDAIEKLIEKKVDWLNGDLS-SLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
              IE  + K V  L  DL     P  E          R       +S    R+ K  S+
Sbjct: 357 FHKIETFLGKSVYKLPVDLEFGEVPAYEPAKRRPRRLGRSGEARSGRSETNKRQGKTASN 416


>gi|320539202|ref|ZP_08038873.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
 gi|320030840|gb|EFW12848.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
          Length = 440

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 146/443 (32%), Positives = 235/443 (53%), Gaps = 12/443 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F++L L  +++ A+ D GY +PT IQ + IP  +   DV G A TGTGKTA+F+LP +  
Sbjct: 6   FSELELDERLIIALHDKGYDRPTAIQAEAIPPAMNGRDVLGSAPTGTGKTAAFLLPVLQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R +   PR LIL PTRELA QVAD   +   + +L +A + GG+ +    +    
Sbjct: 66  LLDFPRKKSGPPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMNHAEVFSE 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I++   +  QTL
Sbjct: 126 NQDMVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEIISAETRWRNQTL 185

Query: 182 LFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT   + +   +E  L+ P ++E +      + I   +        K    L   L 
Sbjct: 186 LFSATLEGEAIHAFAERILKEPVKVEADPSRRERKKILQWYYRADDVQHKTA--LLVHLL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  ++  +IF  +++ V  L   L + G + C + G + Q  R + +    +G I ++V
Sbjct: 244 KQPDVQKSVIFVRKRERVHELATWLREAGINTCYLEGEMVQAKRNEAVKRMMDGRIDVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D + +  +
Sbjct: 304 ATDVAARGLDIIDITHVFNFDMPRTADTYLHRIGRTGRAGRKGTAISLVEAHDHRLLGKV 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
            + + + +      +  L P   K+   + N       + ++      + KN    K  +
Sbjct: 364 GRYLNEPLK--PRVIDELRPKT-KVPNEKSNGKPSKKVLAKRMQD---KAKNKEKAKVKV 417

Query: 421 PLKESEKISKLQQ--DIQENDAD 441
             ++++ + K +Q    +ENDA+
Sbjct: 418 RHRDTKNVGKRRQAKAKRENDAE 440


>gi|190573462|ref|YP_001971307.1| putative DEAD-box helicase [Stenotrophomonas maltophilia K279a]
 gi|190011384|emb|CAQ44999.1| putative DEAD-box helicase [Stenotrophomonas maltophilia K279a]
          Length = 654

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 152/468 (32%), Positives = 248/468 (52%), Gaps = 29/468 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LGLS  V+ AV   GY  P+PIQ  TIP +L+  DV G AQTGTGKTA+F LP+L
Sbjct: 9   LQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + ++  + +   P+ LIL PTRELA QVA+ F+ Y         L +  G P+  Q   L
Sbjct: 69  SNIDLQQIK---PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSAL 125

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG  +++ TPGR++DH +R  L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ
Sbjct: 126 RRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQ 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  +++++++ +LQ+P  + +   ++T+  I   +      +          +
Sbjct: 186 VALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALTRILEV 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   IIF   K     L   L+ +G +  AI+G++ Q  R + ++  KEG + ++
Sbjct: 246 EPFDAM---IIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDIL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A       +   +  
Sbjct: 303 VATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGMLRQ 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH--ARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE+   + ++ +        P +E ++  + N    R    +      F R+       +
Sbjct: 363 IERATRQPIEEMQ------LPSVEAVNDNRINKFTTRITETLGAGGLDFYRQLLERFENE 416

Query: 418 SHIPLKE-SEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            ++P  E +  ++K+              +G+ P  + P  R    ++
Sbjct: 417 QNVPAIEIAAALAKM-------------LQGDTPFLLQPPVRAPREER 451


>gi|325265712|ref|ZP_08132401.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
 gi|324982843|gb|EGC18466.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
          Length = 449

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 150/443 (33%), Positives = 235/443 (53%), Gaps = 18/443 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + FADL L   ++ A+  AGY  PTPIQ ++IP  L   D+   AQTG+GKTA+F+LP +
Sbjct: 3   IKFADLNLDKNILSALQAAGYDSPTPIQAQSIPAALADKDIMASAQTGSGKTAAFLLPSL 62

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
             I+++     + PR L+L PTRELAAQV  N + Y KN        L+GG  F  Q K 
Sbjct: 63  QKIVKRSEKPGKGPRVLVLTPTRELAAQVEKNAQIYAKNMKWVRSVTLVGGSSFGQQIKA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           + +  D+++ TPGR++DH   G++  + +E+L++DEADRMLDMGFI  I+ I +  P  R
Sbjct: 123 MSKPIDIIVATPGRLMDHMRSGRVDFDRLEVLILDEADRMLDMGFIDDIETIVAATPEDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    +NP+ IE+       +  E         +  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKNPEVIEIEREDKQGKIDEQLLYCDDKNHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     L   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A +     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRSGLAISFAEVNEYMAVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK-------NNPIPQKSTGFDRRKK 411
            IE+ I +K+  +      L   LE       N  RK                G    KK
Sbjct: 360 KIERYIGRKLPEV------LIEGLEPTRKRNKNAERKPRGKGGFGGKREDGRWGKGGNKK 413

Query: 412 NYSSQKSHIPLKESEKISKLQQD 434
           ++  +        +++    ++D
Sbjct: 414 SFGDKHGGFKKDGAKREGGFKKD 436


>gi|194290299|ref|YP_002006206.1| dead box ATP-dependent RNA helicase with p-loop hydrolase domain
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224134|emb|CAQ70143.1| DEAD box ATP-dependent RNA helicase with P-loop hydrolase domain
           [Cupriavidus taiwanensis LMG 19424]
          Length = 511

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 165/433 (38%), Positives = 243/433 (56%), Gaps = 10/433 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL  +++ A+ + GY  PTPIQ + IP+VL   DV G AQTGTGKTA F LP++ 
Sbjct: 31  TFDSFGLDARILRALSEQGYTSPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQ 90

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        +L PTRELA QV DN  +Y K+ +L   ++ GG+    Q 
Sbjct: 91  RLLPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQT 150

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L RG ++L+ TPGR+LDH  +  + ++ +++LV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 151 DALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPA 210

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL- 235
            RQTLLFSAT + E+++++ ++L+ P  IEV   +ST E +          + +   +  
Sbjct: 211 QRQTLLFSATFSPEIKRLASSYLKQPVTIEVARSNSTNENVRQAVYQVEDGHKQAAVVHL 270

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +    Q   +  I+F N K     L   LE++G +  AIHG+  Q  RM+ L  FK GT
Sbjct: 271 LKQRAEQSQSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLDGFKSGT 330

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDI 354
           I  +VA+D+AARGLDIPD+  V NFD+P  AE+Y+HRIGRTGRAG  G A ++     D 
Sbjct: 331 IDALVATDVAARGLDIPDMPCVINFDLPYSAEDYVHRIGRTGRAGASGDALSIYVPGNDE 390

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA-QHNHARKNNPIPQKSTGFDRRKKNY 413
           + +  IEKLI++ +    G L   +P  E+   A       +N+    +    + R + +
Sbjct: 391 RLLSDIEKLIKRSIPR--GKLEGFDPTGERARQADSERRRERNDLRRARGADSEDRPRRH 448

Query: 414 SSQKSHIPLKESE 426
               S    + S+
Sbjct: 449 DHGASRQAFRASD 461


>gi|218900583|ref|YP_002448994.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|218541686|gb|ACK94080.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
          Length = 481

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 143/409 (34%), Positives = 234/409 (57%), Gaps = 10/409 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++K+S  ++ +P  IE+     T + IEH     +     +   L + +  
Sbjct: 182 LFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEH---TLFEAIEDEKFSLLKDVTM 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
             I  ++    G  S      EK    +  HA+   PI +K    D  K
Sbjct: 359 DYIGFEIPKAIGP-SKEEVMKEKAAFEEKIHAK---PIIKKDKNADINK 403


>gi|37521894|ref|NP_925271.1| ATP-dependent RNA helicase [Gloeobacter violaceus PCC 7421]
 gi|35212893|dbj|BAC90266.1| gll2325 [Gloeobacter violaceus PCC 7421]
          Length = 384

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 155/371 (41%), Positives = 211/371 (56%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADL L P +V AV   G+ +PTPIQ   IP  L   DV   A TG+GKTA+F+LP+L
Sbjct: 1   MTFADLQLHPDLVRAVEQLGFTQPTPIQTLAIPPALAGRDVLACAMTGSGKTAAFLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L          R L+L PTRELA Q+  +  +  +   L  A +IGG+  E Q +   
Sbjct: 61  QQLIAQPRSTT--RALVLTPTRELAGQIEMHLGQLARYSALRGASIIGGVSPEPQARAFH 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G +VLI TPGR+LDHF++    + N+EILV+DEADRML+MGF+P I+ I       RQT
Sbjct: 119 KGVEVLIGTPGRLLDHFDQPYARLANLEILVLDEADRMLEMGFLPDIRRILRHTGHRRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   + K++   L+NP  +     ++ A  I H             +     L 
Sbjct: 179 LFFSATMPGPIAKLATEILRNPVTLNQERKAAPAVGITHSVYPVAQNLK---SKFLLELL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++ M+  I+F   K     L   L K   S   IHGN  Q  R + L+ FK G  +++V
Sbjct: 236 EREGMRQVIVFTRTKHRANRLSEYLSKARISCERIHGNRSQGQRTEALAGFKSGKYRVLV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RG+DI  +GHV NFDVP  AE+YIHR+GRT RA R G AFT V+ E+   + AI
Sbjct: 296 ATDIASRGIDIEALGHVVNFDVPQAAEDYIHRVGRTARAERTGDAFTFVSPEEEDQLRAI 355

Query: 361 EKLIEKKVDWL 371
           E+ I K++  L
Sbjct: 356 ERAIGKRLPRL 366


>gi|241948951|ref|XP_002417198.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223640536|emb|CAX44790.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 399

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P ++  +   G+  P+ IQ + I  ++   D    AQ+GTGKTA+F + ML 
Sbjct: 27  TFESMNLKPDLLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLE 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    + +  + LIL PTRELA Q+ +  +  G   N+     IGG       KKL++
Sbjct: 87  VIDT---KSKECQALILSPTRELAIQIQNVVKHLGDYMNIHTHACIGGKNVGDDVKKLQQ 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR++D   R  L   NI++L++DEAD +   GF   I  I   +P + Q +
Sbjct: 144 GQQIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYEIYKHLPPSVQVV 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  E+ +++  F  +P +I V     +   I+  +V    +  K   L       
Sbjct: 204 VVSATLPREVLEMTSKFTTDPVKILVKRDEISLSGIKQFYVQCEREDWKFDTLCDL--YD 261

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K  V  L   ++KQ F+V A+HG++ Q  R  I++ F+ G  +++++
Sbjct: 262 NLTITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNEFRRGNSRVLIS 321

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A  L+ K+D+  +  +E
Sbjct: 322 TDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVATLKDLE 381

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    K+  +  +++ +
Sbjct: 382 KYYSTKIKEMPMNINDI 398


>gi|183598226|ref|ZP_02959719.1| hypothetical protein PROSTU_01610 [Providencia stuartii ATCC 25827]
 gi|188020395|gb|EDU58435.1| hypothetical protein PROSTU_01610 [Providencia stuartii ATCC 25827]
          Length = 445

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 165/416 (39%), Positives = 248/416 (59%), Gaps = 9/416 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L+ +++ A+ + GY  PTPIQ + IP VL  HD+   AQTGTGKTA F LP+L 
Sbjct: 3   SFSDLALNEEILLAINELGYEAPTPIQQQAIPAVLDGHDLLASAQTGTGKTAGFTLPILQ 62

Query: 62  I---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 +     +  R LIL PTRELAAQVA+N ++Y ++  +   ++ GG+    Q  K
Sbjct: 63  KLISTPRIGKDRKPIRALILTPTRELAAQVAENVKEYSRHLRIRSFVVFGGVSINPQMMK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+LI TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + S +P  R
Sbjct: 123 LRGGVDILIATPGRLLDLEHQNAVNLSQVEILVLDEADRMLDMGFIHDIRRVISKLPKKR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT ++E+++++   L NP  IEV   +S +E +       +    K+ A L   
Sbjct: 183 QNLLFSATFSNEIKQLANKLLDNPVTIEVAPRNSASEQV---TQFVHHVDKKRKAELLSY 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  ++  +  ++F   K     L   L K G    AIHGN  Q +R + L++FK G +++
Sbjct: 240 MIGRENWQQVLVFTRTKHGANRLAEHLNKDGVKAAAIHGNKSQGARTRALADFKSGDVRV 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + +V NF++PN AE+Y+HRIGRTGRA   G A +LV  +++K + 
Sbjct: 300 LVATDIAARGLDIEQLPYVVNFELPNVAEDYVHRIGRTGRADTTGMAVSLVCVDELKLLK 359

Query: 359 AIEKLIEKKVDWL--NGDLSSLNPPLEKIDIA-QHNHARKNNPIPQKSTGFDRRKK 411
            IEKL++K V  +   G     +   E I  A Q N+ R++      ++   RR++
Sbjct: 360 DIEKLLKKPVPVMAIEGYEPDPSIKPEPIQKAPQRNNERRSANKRHNTSVKPRRER 415


>gi|260777273|ref|ZP_05886167.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606939|gb|EEX33213.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450]
          Length = 641

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 157/463 (33%), Positives = 245/463 (52%), Gaps = 35/463 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+   G+V PTPIQ   IP +++  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLMEGTDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             LE  + +   P+ ++L PTRELA QVA   +  G+N +    L I G      Q + L
Sbjct: 66  NKLELSQRK---PQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D  NR +L ++ +   V+DEAD ML+MGF+  +  I    P + Q
Sbjct: 123 KNGAHIVVGTPGRVQDLINRERLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   L+ + E FL++P  I+V   + T + +E  F         +        
Sbjct: 183 RVLFSATMPPMLKNIVERFLRDPITIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLET 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D     I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 243 EETD---ASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE++ +  ++ +   L           +A+    +    + Q              +K H
Sbjct: 360 IERVTKSSMEEIQLPLRD--------KVAEARLVKLGAELEQ--------------EKEH 397

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
             L++  ++ +  QD  E DA +L       A +L + +GK  
Sbjct: 398 KSLEKFGELVEKLQDALEIDAATLA------AILLKRQQGKRP 434


>gi|145219726|ref|YP_001130435.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205890|gb|ABP36933.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeovibrioides
           DSM 265]
          Length = 412

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 156/418 (37%), Positives = 236/418 (56%), Gaps = 11/418 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L +   ++ A+ + GY  PTPIQ + IP+VL+  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MQFSSLHIIDPILQALQEEGYSHPTPIQAEAIPVVLKGGDILGCAQTGTGKTAAFAIPIL 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 + + R++  R+LI+ PTRELA Q+ ++F  YG++  LT  ++ GG+    Q  +
Sbjct: 61  QRLGESRVQGRIKKIRSLIVTPTRELAIQIGESFSAYGRHTPLTNTVIFGGVNQNPQISR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+L+ TPGR+LD  N+G + ++++EILV+DEADRMLDMGFI  I+ + + +P  +
Sbjct: 121 LKNGVDILVATPGRLLDLMNQGFINLHDVEILVLDEADRMLDMGFIHDIRKVLAALPKEK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  ++ ++S   L NP +I V  PSST E I                +    
Sbjct: 181 QSLFFSATMPPDIVRLSSTILHNPAKISVTPPSSTVEIINQQIYFVDKGNKSPLLVHLL- 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                 +   ++F   K     +   L K G +  AIHGN  Q +R + LSNFK    ++
Sbjct: 240 --KNPDITTALVFTRTKHGADKVVKHLLKNGITAEAIHGNKAQNARQRALSNFKSQKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ ++ HV N+D  N  E Y+HRIGRTGRAG  G A +    E+  ++ 
Sbjct: 298 LVATDIAARGIDVDELQHVINYDTSNIPETYVHRIGRTGRAGASGTAISFCDAEEKAYLK 357

Query: 359 AIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            IEKLI K +   +     L   NP        Q    R  +P P+       +++ Y
Sbjct: 358 DIEKLIAKSIPVVEEHPFPLVDHNPVKA---AQQQGRGRSGHPAPRPQGNSRPKQRRY 412


>gi|39940710|ref|XP_359892.1| eukaryotic initiation factor 4A-12 [Magnaporthe oryzae 70-15]
 gi|152032454|sp|A4QU31|FAL1_MAGO7 RecName: Full=ATP-dependent RNA helicase FAL1
 gi|145010887|gb|EDJ95543.1| eukaryotic initiation factor 4A-12 [Magnaporthe oryzae 70-15]
          Length = 401

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   GY  P+ +Q + I  V +  D    AQ+GTGKTA+F + ML 
Sbjct: 28  TFESMALKESLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQ 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 88  VIDTA---VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDY 144

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 145 GQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVV 204

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 205 VVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAIEKEDWKFDTLCDL--YD 262

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG++ Q+ R  I+ +F++G  +++++
Sbjct: 263 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLIS 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 323 TDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIE 382

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 383 LYYSTQIDEMPMNVADL 399


>gi|310800687|gb|EFQ35580.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 401

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   GY  P+ +Q + I  V +  D    AQ+GTGKTA+F + ML 
Sbjct: 28  TFESMSLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQ 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 88  VIDTA---VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDY 144

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 145 GQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVV 204

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 205 VVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDL--YD 262

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG++ Q+ R  I+ +F++G  +++++
Sbjct: 263 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLIS 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 323 TDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIE 382

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 383 LYYSTQIDEMPMNVADL 399


>gi|269139672|ref|YP_003296373.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|267985333|gb|ACY85162.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|304559541|gb|ADM42205.1| ATP-dependent RNA helicase RhlE [Edwardsiella tarda FL6-60]
          Length = 440

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 164/441 (37%), Positives = 252/441 (57%), Gaps = 11/441 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL  +++ AV + GY  PTPIQ + IPLVLQR D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLCAELLRAVEEQGYRDPTPIQQQAIPLVLQRRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L +        R  R LIL PTRELAAQ+ +N  +Y ++  L   ++ GG+    Q  
Sbjct: 61  QLLHQNPKNGKGRRPVRALILTPTRELAAQIGENVREYSRHLPLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++ + L NP  +EV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDEIKALAASLLHNPAEVEVARRNTASELV---TQHVHLVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L      +  ++F   K    +L   L K G S  AIHGN  Q +R + L++FK G I+
Sbjct: 238 FLIGTRDWRQVLVFTRTKYGANHLAEQLNKDGISAAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + +V N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPYVVNYELPNVPEDYVHRIGRTGRAQATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ- 416
             IE+L+++ +  +  +    +P ++   I       + N    +  G  RR +   +  
Sbjct: 358 RDIERLLKRPIPRMAIEGYEPDPTIKAEPIQNGRQGGRQNSGRTERPGQGRRAEGPRNAA 417

Query: 417 ----KSHIPLKESEKISKLQQ 433
               ++  P + +E+     +
Sbjct: 418 PRQGQNRRPRRPAEQGKGRTE 438


>gi|149186749|ref|ZP_01865060.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
 gi|148829657|gb|EDL48097.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
          Length = 455

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 155/424 (36%), Positives = 229/424 (54%), Gaps = 6/424 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGLS  V+ A+   GY  PTPIQ + IP VL+  D+ GIAQTGTGKTA+F+LP + 
Sbjct: 3   QFTDLGLSQPVLQALDIKGYTTPTPIQAQAIPPVLEGRDLMGIAQTGTGKTAAFMLPSID 62

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L     +      R LIL PTRELA Q+AD+ + YG    L V  ++GG        KL
Sbjct: 63  RLRDADKQSPFKSCRMLILAPTRELAGQIADSAKDYGALAGLKVHSIVGGTSVNKDRNKL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD  ++    ++ +EIL++DEAD+MLD+GFI  ++ I+ LVP  RQ
Sbjct: 123 HRGTDILVATPGRLLDLIDQKAFTLDKVEILILDEADQMLDLGFIHALRKISELVPDDRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--Q 237
           TL FSATM  ++Q++   + +NP ++ V   S+TAE I+           +    +   +
Sbjct: 183 TLFFSATMPKQIQELVGKYCRNPVKVSVTPESTTAERIDQYLFMVQQDEKQTLLEMILSE 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             Q     +  +IF   K     +   L + G    AIHGN  Q  R + L  FK     
Sbjct: 243 RHQVPGKFERVLIFARTKHGCDRIVKKLGQSGIPANAIHGNKSQPQRERALDEFKRAKTP 302

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DIP V HV N+++PN  E Y+HRIGRT RAGR G A    A+++  ++
Sbjct: 303 ILVATDVAARGIDIPGVSHVLNYELPNVPEQYVHRIGRTARAGRDGVAIAFCAEDERDYL 362

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
             I K  + + +   L  +  ++   +      Q     +    P       + K+ + +
Sbjct: 363 KDIRKKTDAEFERLPLPDNFRAVVEGVGPTKREQKPKLARPKVRPTGGAAKPKPKQKHPA 422

Query: 416 QKSH 419
           +K  
Sbjct: 423 RKGK 426


>gi|261202786|ref|XP_002628607.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis
           SLH14081]
 gi|225556973|gb|EEH05260.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus G186AR]
 gi|239590704|gb|EEQ73285.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis
           SLH14081]
 gi|239612419|gb|EEQ89406.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis ER-3]
 gi|240277518|gb|EER41026.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus H143]
 gi|325093598|gb|EGC46908.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus H88]
 gi|327355221|gb|EGE84078.1| ATP-dependent RNA helicase FAL1 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 399

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L 
Sbjct: 26  TFEDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++      +    L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 86  VIDTVLRETQA---LVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDH 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 143 GQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 203 VVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDL--YD 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++++
Sbjct: 261 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIS 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 321 TDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 381 LYYSTQIDEMPMNVADL 397


>gi|62179387|ref|YP_215804.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62127020|gb|AAX64723.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322713858|gb|EFZ05429.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 453

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 165/435 (37%), Positives = 242/435 (55%), Gaps = 22/435 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 QMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKIDIAQHNH--------------ARKNNPIPQ 401
             IEKL++K+   +   G     +   E I   +                  R   P  Q
Sbjct: 358 RDIEKLLKKESPRITTPGYEPDPSIKAEPIQNGRQQRGGGGRGRGQNQGGAGRSQQPRRQ 417

Query: 402 KSTGFDRRKKNYSSQ 416
            S     + K  + +
Sbjct: 418 DSGAAKAKPKPRTGE 432


>gi|325577158|ref|ZP_08147642.1| ATP-dependent RNA helicase SrmB [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160740|gb|EGC72861.1| ATP-dependent RNA helicase SrmB [Haemophilus parainfluenzae ATCC
           33392]
          Length = 443

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 140/402 (34%), Positives = 217/402 (53%), Gaps = 9/402 (2%)

Query: 1   MD---FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           M+   F +  LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+L
Sbjct: 1   MNLSPFEEFDLSPELLKALEKKGYTRPTAIQLEAIPAAMEERDVLGSAPTGTGKTAAFLL 60

Query: 58  P-MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           P +  +L+  R +   PR LIL PTRELA QVA+  E+  +  +L +A + GG+ ++   
Sbjct: 61  PAIQHLLDYPRRKPGAPRILILTPTRELAMQVAEQAEELAQFTHLKIATITGGVAYQNHG 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +      D+++ TPGR+L +          +E+L+ DEADRML MGF    + I +   +
Sbjct: 121 EVFNSNQDIVVATPGRLLQYIKEENFDCRAVEMLIFDEADRMLQMGFGQDAEKIAAETRW 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +QTLLFSAT+  EL       L N     ++   S  E  +      +A  ++    L 
Sbjct: 181 RKQTLLFSATLEGELLVDFAERLLNDPVK-IDAEPSRRERKKINQWYYHADSNEHKIKLL 239

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                 + +  GI+F  ++++V  L  +L K+G     + G++ Q  R   +   K G +
Sbjct: 240 ARFIETEKVSRGIVFVRRREDVRELSDTLRKRGIRSTYLEGDMAQTQRNNAIDKLKSGVV 299

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K 
Sbjct: 300 TVLVATDVAARGIDIDDVTHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKL 359

Query: 357 IDAIEKLIEK--KVDWLNGDLSSLNPPL--EKIDIAQHNHAR 394
           +  I++  E+  K   L G      PP   E   +++   AR
Sbjct: 360 LGKIKRYTEELLKARILEGLEPRTKPPKDGEVKSMSKKQKAR 401


>gi|237810939|ref|YP_002895390.1| ATP-dependent RNA helicase RhlE [Burkholderia pseudomallei MSHR346]
 gi|237503374|gb|ACQ95692.1| ATP-dependent RNA helicase RhlE [Burkholderia pseudomallei MSHR346]
          Length = 488

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 162/392 (41%), Positives = 233/392 (59%), Gaps = 9/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                   + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            ++     
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKID 386
           +  IE+LI++++    + G     N   E I 
Sbjct: 358 LRDIERLIKREIPQQVIPGFEPDPNAKPEPIQ 389


>gi|197337346|ref|YP_002157966.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197314598|gb|ACH64047.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 418

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 160/410 (39%), Positives = 240/410 (58%), Gaps = 10/410 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+ +++  V + G+ + TP+Q + IPLVLQ HDV   AQTGTGKTA+F LP++
Sbjct: 1   MSFASLGLTEQILTTVAELGFKEATPVQKQAIPLVLQGHDVLAGAQTGTGKTAAFGLPLI 60

Query: 61  TI----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                   +     ++ R+LIL PTRELA QV D+   Y +N  L V +  GG     Q 
Sbjct: 61  QRLIESPIERHEESKVVRSLILTPTRELAQQVFDSLVSYTQNTELKVVVAYGGTSINVQK 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  GAD+LI TPGR+LDH +   + +N  E LV+DEADRMLDMGFIP I+ I   +P 
Sbjct: 121 ENLLGGADILIATPGRLLDHLHIKTITLNQAEYLVLDEADRMLDMGFIPDIKKILRKMPD 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSAT + ++++++   L  PK ++V   +STA+T+E            +     
Sbjct: 181 ERQTLFFSATFSKKVREIAYYMLNKPKEVQVTPTNSTADTVEQMVYPVDKHRKSEL---L 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L      +  ++F   K+    L   L+K G    +I+G+  Q +R++ L  FK G +
Sbjct: 238 AYLIGSRNWQQVLVFTKTKQGSDELVKELKKDGIKAASINGDKSQGARLRALEEFKTGKV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V N+++P +AE+Y+HRIGRTGRAG  GKA +L++ ++   
Sbjct: 298 RALIATDVAARGLDIEQLECVINYELPFKAEDYVHRIGRTGRAGHTGKAISLMSMDEEYL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           + AIE L++ ++  +WL G     N PL K D  +    R ++    K+ 
Sbjct: 358 LKAIETLLDTRLPQEWLQGYEPDPNAPL-KEDRPRQGRGRSSDKRKMKAK 406


>gi|113868675|ref|YP_727164.1| ATP-dependent helicase [Ralstonia eutropha H16]
 gi|113527451|emb|CAJ93796.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
           [Ralstonia eutropha H16]
          Length = 520

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 161/429 (37%), Positives = 239/429 (55%), Gaps = 12/429 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL  +++ A+ + GY  PTPIQ + IP+VL   D+ G AQTGTGKTA F LP++ 
Sbjct: 39  TFDSFGLDARILRALSEQGYTTPTPIQAQAIPVVLIGKDMMGAAQTGTGKTAGFALPIIQ 98

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        +L PTRELA QV DN  +Y K+ +L   ++ GG+    Q 
Sbjct: 99  RLLPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQT 158

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L RG ++L+ TPGR+LDH  +  + ++ +++LV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 159 DALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPA 218

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E+++++ ++L++P  IEV   +ST E +          + +   +  
Sbjct: 219 HRQTLLFSATFSPEIKRLASSYLKHPVTIEVARSNSTNENVRQMVYLVEDGHKQAAVVHL 278

Query: 237 QLLQSQDTMKNGIIFCNQKK-NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              +++  +    I     K     L   LE++G +  AIHG+  Q  RM+ L  FK GT
Sbjct: 279 LKQRAEQGLSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEGFKSGT 338

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDI 354
           I  +VA+D+AARGLDIPD+  V NFDVP  AE+Y+HRIGRTGRAG  G A ++     D 
Sbjct: 339 IDALVATDVAARGLDIPDMPCVVNFDVPYSAEDYVHRIGRTGRAGASGDALSIYVPGNDE 398

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI---DIAQHNHARKNNPIPQKSTGFDRRKK 411
           + +  IEKLI++ +    G L   +P  E+    D  +               G +R ++
Sbjct: 399 RLLSDIEKLIKRSIPR--GKLEGFDPTGERARQGDTERRRERSDVRRARGNGEGEERPRR 456

Query: 412 NYSSQKSHI 420
           +  S    +
Sbjct: 457 HEHSANRQV 465


>gi|320546379|ref|ZP_08040695.1| ATP-dependent RNA helicase DeaD [Streptococcus equinus ATCC 9812]
 gi|320448989|gb|EFW89716.1| ATP-dependent RNA helicase DeaD [Streptococcus equinus ATCC 9812]
          Length = 530

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 153/373 (41%), Positives = 229/373 (61%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ AV  AG+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELNLSEAILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R  V+    L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L 
Sbjct: 61  DKIDTSRNLVQ---ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + ++E L++DEAD ML+MGF+  I+ I S VP TRQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLEHVETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + ++++   F+QNP+ ++V     T + ++  ++    Q             
Sbjct: 178 LLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +G+    IHG++DQ  R+++L +FK   I ++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKQGQSITFVAPNEMGYLSII 354

Query: 361 EKLIEKKVDWLNG 373
           EKL +K++  L  
Sbjct: 355 EKLTKKRMKGLKP 367


>gi|59713736|ref|YP_206511.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|59481984|gb|AAW87623.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 460

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 119/424 (28%), Positives = 196/424 (46%), Gaps = 12/424 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +       PT IQ K +P+ +   DV   ++TG+GKT +FVLPML
Sbjct: 16  LQFKDLGLDNRLLKNLAHQNIKTPTEIQRKAVPVAIAGKDVLASSKTGSGKTLAFVLPML 75

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        PR +IL PTRELA QV  +             L+ GG  F  Q   L
Sbjct: 76  HKSLKTKSFSKNDPRAVILAPTRELAKQVYSHLRAMLGGLTYDATLITGGENFNDQVNAL 135

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +    ++ TPGR+ DH     L ++ +E L++DEADRMLD+GF  ++Q I       R+
Sbjct: 136 RKHPKFIVATPGRLADHLEHQSLYLDGLETLILDEADRMLDLGFAEHLQKIHKAASHRRR 195

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D                 ++   S  E  +         +      +   +
Sbjct: 196 QTLMFSATLDHDAVNKFAGNMLDNPKRISVGLSNDEHKDITQRFYLCDHLDHKQAILNKI 255

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     +IF   + +   L   L ++     A+ G+++Q +R  I+S F+    +++
Sbjct: 256 IETEDYFQIMIFTATRSDTDRLTKLLNEENLKAVALSGDMNQTARNNIMSQFERRVHKIL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+  V HV NFD+P   E Y+HR+GRTGRAG+ G A +LV  +D +    
Sbjct: 316 VTTDVASRGLDLTSVTHVINFDMPKHMEEYVHRVGRTGRAGKKGTAISLVGPKDWESFKR 375

Query: 360 IEKLIEKKV-----DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +E  +++ +     + L G    L P  ++         +K +P   K+ G   + K   
Sbjct: 376 VETFLQQDLSFSVFEELKGKFKGLKPKHKR------TFVKKGDPKKFKAKGNQNKPKAPK 429

Query: 415 SQKS 418
            + +
Sbjct: 430 KRDN 433


>gi|67902058|ref|XP_681285.1| hypothetical protein AN8016.2 [Aspergillus nidulans FGSC A4]
 gi|74656894|sp|Q5AUL4|FAL1_EMENI RecName: Full=ATP-dependent RNA helicase fal1
 gi|40740448|gb|EAA59638.1| hypothetical protein AN8016.2 [Aspergillus nidulans FGSC A4]
 gi|259480767|tpe|CBF73711.1| TPA: ATP-dependent RNA helicase fal1 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5AUL4] [Aspergillus
           nidulans FGSC A4]
          Length = 399

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F +  L 
Sbjct: 26  TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISALQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 86  VIDTV---VRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDY 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 143 GQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P R+ V     T E I+  F+A   +  K   L       
Sbjct: 203 VVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDL--YD 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++++
Sbjct: 261 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIS 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  IE
Sbjct: 321 TDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 381 LYYSTQIDEMPMNVADL 397


>gi|300690871|ref|YP_003751866.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
           PSI07]
 gi|299077931|emb|CBJ50571.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
           PSI07]
          Length = 495

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 167/436 (38%), Positives = 253/436 (58%), Gaps = 8/436 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F   GL P ++ A+ ++GY +PTPIQ   IP+V+   DV G AQTGTGKTA F LP++
Sbjct: 15  VTFDTFGLHPDILRALAESGYTRPTPIQAAAIPVVVAGRDVMGAAQTGTGKTAGFSLPII 74

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L         P        IL PTRELA QV DN  KYGK   L  A++ GG+    Q
Sbjct: 75  QNLLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYGKYTALRSAVVFGGVDMNPQ 134

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L RG ++L+ TPGR+LDH  +  + ++ + +LV+DEADRMLDMGF+P +Q I +L+P
Sbjct: 135 TEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLP 194

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCAL 234
             RQTLLFSAT + E++K++ ++L++P+ IEV   ++TA+ +          + +     
Sbjct: 195 AHRQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVH 254

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L +    Q      I+F N K     L  +LE++G +  AIHG+  Q  RM+ L  FK+G
Sbjct: 255 LLRQRAEQGLPSQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQG 314

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           T+ ++VA+D+AARGLDI  +  V NFD+P  AE+Y+HRIGRTGRAG  G A +L A  D 
Sbjct: 315 TVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDE 374

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           + +  IEKLI++ +      L+  +P  E+    +     +     +     +R ++N +
Sbjct: 375 RLLADIEKLIKRNLPR--ETLTDFDPTGEQARERERRERDERRNRTEIRRSRERDERNGA 432

Query: 415 SQKSHIPLKESEKISK 430
               H  ++ + + S+
Sbjct: 433 RVLDHTVVRPAFRASE 448


>gi|17232210|ref|NP_488758.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
 gi|17133855|dbj|BAB76417.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
          Length = 426

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 168/422 (39%), Positives = 244/422 (57%), Gaps = 18/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS +++ AV + GY KPTPIQ+++IP VL   D+   AQTGTGKTASF LP+L
Sbjct: 1   MSFSHLGLSNEIINAVTELGYTKPTPIQMQSIPAVLSGRDLLAGAQTGTGKTASFTLPLL 60

Query: 61  TILEKGRAR-----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +L +   +         R LIL PTRELAAQV  +   YGK   L   ++ GG+    Q
Sbjct: 61  HLLSQDSLKSASNASSPIRALILTPTRELAAQVESSVRDYGKYLKLNSMVMFGGVSINPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L+   D+L+ TPGR+LDH  +G + ++ IEILV+DEADRMLDMGFI  I+ I SL+P
Sbjct: 121 KQRLKGRVDILVATPGRLLDHVQQGTVNLSQIEILVLDEADRMLDMGFIRDIRRILSLLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLF AT +D++++++   L  P+ IEV   + TA+T+            +     
Sbjct: 181 KQRQNLLFFATFSDKIKELAAGLLNRPQMIEVARRNVTADTVTQKVYKIERDRKRDL--- 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L  +D     ++F   K     L   L  +     AIHGN  Q +R   L+ FK G+
Sbjct: 238 LAHLIRKDNWYQVLVFTRTKYGADRLVKQLGHERIQALAIHGNKSQSARTHALAKFKNGS 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARGLDI ++ +V NFD+P   E+Y+HRIGRTGRAG  G+A +LV+ ++  
Sbjct: 298 LQVLVATDIAARGLDISELPYVVNFDLPYVPEDYVHRIGRTGRAGASGEAVSLVSADEYH 357

Query: 356 HIDAIEKLIEKKVDW-----LNGDLSSLNPP-----LEKIDIAQHNHARKNNPIPQKSTG 405
            +  IEKLIEK++ +     +  +  +   P      +K   +QH        +P+KS  
Sbjct: 358 LLADIEKLIEKRLPFELVAGIGANSQAKPEPTQDERKQKPKDSQHQPRSAAQGVPKKSGK 417

Query: 406 FD 407
             
Sbjct: 418 KR 419


>gi|17507121|ref|NP_491703.1| hypothetical protein F33D11.10 [Caenorhabditis elegans]
 gi|2773184|gb|AAB96704.1| Hypothetical protein F33D11.10 [Caenorhabditis elegans]
          Length = 399

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 214/377 (56%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + +P +L+  DV   AQ+GTGKTA+F + +L 
Sbjct: 27  TFDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSISVLQ 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 87  SLDT---QVRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDY 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   + +I   +P   Q +
Sbjct: 144 GQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVV 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L+      
Sbjct: 204 LLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDL--YD 261

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   ++FCN ++ V  L   +++  F+V ++HG+++Q+ R +++  F+ GT +++++
Sbjct: 262 TLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLIS 321

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  V N+D+PN  E YIHRIGR+GR GR G A   V ++D++ +  IE
Sbjct: 322 TDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDIE 381

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ +
Sbjct: 382 QYYSTQIDEMPMNIADI 398


>gi|288554498|ref|YP_003426433.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288545658|gb|ADC49541.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 502

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 148/367 (40%), Positives = 217/367 (59%), Gaps = 6/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + GL+ +VV AV   G+ + TPIQ  TIP  L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   TFYEFGLNSEVVRAVTQMGFEEATPIQAATIPTALEGKDIIGQAQTGTGKTGAFGVPLID 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +      V+    LIL PTRELA QVA++  K+GK   +   ++ GG     Q + L+ 
Sbjct: 63  RINIENDHVQA---LILAPTRELANQVAESLFKFGKYKGVRTVVVYGGQDMRKQIRDLKN 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR++DH  R  + +  +E +V+DEAD ML+MGFI  I+ I S VP  RQTL
Sbjct: 120 KPHVVVATPGRLMDHMRRKTIRLGQVETVVLDEADEMLNMGFIEDIETILSEVPNERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K+++ F+  PK I V +   T E IE         + ++          
Sbjct: 180 LFSATMPKRIEKLAQTFMSEPKLIAVKSKEVTMENIEQ---QYVEVHERQKFDTLCRFID 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T +  I+F   K+ V  L  +L K+G+    IHG+++Q  R  +L  FK G + ++VA
Sbjct: 237 IHTPELAIVFGRTKRRVDELSEALTKRGYRAEGIHGDLNQAKRDSVLRKFKNGLVDVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T     + +H+  IE
Sbjct: 297 TDVAARGLDITGVTHVYNFDLPQDPESYVHRIGRTGRAGKSGLALTFATPREREHVKTIE 356

Query: 362 KLIEKKV 368
           ++ +KK+
Sbjct: 357 QVSKKKM 363


>gi|194365003|ref|YP_002027613.1| DEAD/DEAH box helicase domain-containing protein [Stenotrophomonas
           maltophilia R551-3]
 gi|194347807|gb|ACF50930.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 646

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 153/468 (32%), Positives = 250/468 (53%), Gaps = 29/468 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LGLS  V+ AV   GY  P+PIQ  TIP +L+  DV G AQTGTGKTA+F LP+L
Sbjct: 9   LQFAQLGLSESVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + ++  + +   P+ L+L PTRELA QVA+ F+ Y         L +  G P+  Q   L
Sbjct: 69  SNIDLQQIK---PQALVLAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSAL 125

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG  +++ TPGR++DH +R  L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ
Sbjct: 126 RRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPAKRQ 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  +++++++ +LQ+P  + +   ++T+  I   +      +          +
Sbjct: 186 VALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALTRILEV 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   IIF   K     L   L+ +G +  AI+G++ Q  R + ++  KEG + ++
Sbjct: 246 EPFDAM---IIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDIL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A       +   +  
Sbjct: 303 VATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGMLRQ 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH--ARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE+   + ++ +        P +E ++  + N   +R    + Q    F R+       +
Sbjct: 363 IERATRQPIEEMQ------LPSVEAVNDNRINKFTSRITETLGQGGLDFYRQLLERFETE 416

Query: 418 SHIPLKE-SEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            ++P  E +  ++K+ Q             G+ P  + P  R    ++
Sbjct: 417 QNVPAIEVAAALAKMMQ-------------GDTPFLLQPPVRAPREER 451


>gi|237807374|ref|YP_002891814.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237499635|gb|ACQ92228.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 642

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 140/394 (35%), Positives = 218/394 (55%), Gaps = 15/394 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++LGL+  ++ AV   GY  P+PIQ   IP +L+  D+ G AQTGTGKT +F LP+L+
Sbjct: 9   SFSELGLAAPILKAVAAVGYEDPSPIQAAAIPPLLEGRDLLGQAQTGTGKTGAFALPILS 68

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   +   +    LIL PTRELA QVA+  + Y +       L I  G  +++Q + L 
Sbjct: 69  RLNLTQMDTQ---VLILAPTRELAIQVAEACQSYAQFIPDFHVLPIYGGSSYDSQLRALR 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++D   RGKL ++ ++ LV+DEAD ML MGFI  ++ +    P  RQ 
Sbjct: 126 RGAQVVVGTPGRVMDMMRRGKLDLSALKTLVLDEADEMLRMGFIDDVEWVIEQCPLDRQI 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +++++++   L+ P  I++ + +STA  I   +      +          + 
Sbjct: 186 ALFSATMPEQIRRIAHRHLKTPVEIKIASKTSTAANIRQRYWLVSGLHKLDAMTR---ML 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     ++F   K     L   L  +G S  A+HG+I Q+ R + +   K G I +++
Sbjct: 243 EVEQYDALLVFVRTKTAAEELTSKLSARGHSCEALHGDIPQKLRERTVEKLKAGQIDILI 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A   VA  + + +  I
Sbjct: 303 ATDVAARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLRMI 362

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           E+   + ++ +    +         DI +H   R
Sbjct: 363 EQATRQPIEPMQMPTAK--------DINKHRLER 388


>gi|322712791|gb|EFZ04364.1| eukaryotic initiation factor 4A-12 [Metarhizium anisopliae ARSEF
           23]
          Length = 402

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   GY  P+ +Q + I  V +  D    AQ+GTGKTA+F + ML 
Sbjct: 29  TFESMSLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQ 88

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 89  VIDTA---VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDY 145

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 146 GQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPATQVV 205

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 206 VVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDL--YD 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG++ Q+ R  I+ +F++G  +++++
Sbjct: 264 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLIS 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 324 TDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVRILRDIE 383

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 384 LYYSTQIDEMPMNVADL 400


>gi|322698074|gb|EFY89847.1| eukaryotic initiation factor 4A-12 [Metarhizium acridum CQMa 102]
          Length = 402

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   GY  P+ +Q + I  V +  D    AQ+GTGKTA+F + ML 
Sbjct: 29  TFESMSLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQ 88

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 89  VIDTA---VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDY 145

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 146 GQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPATQVV 205

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 206 VVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDL--YD 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG++ Q+ R  I+ +F++G  +++++
Sbjct: 264 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLIS 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 324 TDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVRILRDIE 383

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 384 LYYSTQIDEMPMNVADL 400


>gi|195998213|ref|XP_002108975.1| hypothetical protein TRIADDRAFT_63563 [Trichoplax adhaerens]
 gi|190589751|gb|EDV29773.1| hypothetical protein TRIADDRAFT_63563 [Trichoplax adhaerens]
          Length = 654

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 144/426 (33%), Positives = 222/426 (52%), Gaps = 9/426 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F++      V+  + + G+  PTPIQ ++ P+ L   DV GIAQTG+GKT ++VLP  
Sbjct: 79  LSFSEASFPDYVMSEINNQGFKLPTPIQAQSWPVGLSGRDVVGIAQTGSGKTLAYVLPSI 138

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +    +        P  LIL PTRELA QV      +G+   +  A + GG P   Q ++
Sbjct: 139 IHIKNQPPLRHGDGPIALILCPTRELAQQVHSVSTTFGRLARINCACIYGGSPKGPQLRE 198

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG ++ + TPGR+LD     +  +N    LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 199 LSRGVEICVATPGRLLDFLESRRTNLNRCSYLVLDEADRMLDMGFEPQIKQIIGSIKCPR 258

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQ 237
           QT+++SAT   E++ ++  FL++  +I + +   T        V    +  K+       
Sbjct: 259 QTVMWSATWPKEIRTLAREFLRDYVQINIGSSDLTTNHNIKQIVEVCREEEKEDKLCKLL 318

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               +   K  I+F   KK    L   L + G+ V  IHG+  Q  R ++LS F+ G I 
Sbjct: 319 SDILRQDEKKTIVFVETKKKSDYLSRRLVRSGWPVLCIHGDKCQSERDRVLSEFRSGRIP 378

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARGLDI DV  V N+D PN +E+Y+HRIGRT R+G+ G A+T     +I+  
Sbjct: 379 VLIATDVAARGLDISDVKLVINYDFPNNSEDYVHRIGRTARSGKTGTAYTFFTASNIRQS 438

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             +  L+ +    +N DL  L       D A+   A+K+    +    F  R +N S++ 
Sbjct: 439 PNLIALLREANQPINPDLIQLG------DAARAEMAQKHRGKMRGRDRFYNRDRNASNRY 492

Query: 418 SHIPLK 423
            +   K
Sbjct: 493 PYAKSK 498


>gi|46122961|ref|XP_386034.1| hypothetical protein FG05858.1 [Gibberella zeae PH-1]
 gi|91206664|sp|Q4IAA0|FAL1_GIBZE RecName: Full=ATP-dependent RNA helicase FAL1
          Length = 401

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   GY  P+ +Q + I  V +  D    AQ+GTGKTA+F + ML 
Sbjct: 28  TFESMSLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQ 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 88  VIDTA---VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDY 144

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 145 GQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPATQVV 204

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 205 VVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDL--YD 262

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG++ Q+ R  I+ +F++G  +++++
Sbjct: 263 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLIS 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 323 TDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVRILRDIE 382

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 383 LYYSTQIDEMPMNVADL 399


>gi|312882439|ref|ZP_07742180.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369839|gb|EFP97350.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 452

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 171/453 (37%), Positives = 256/453 (56%), Gaps = 14/453 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGLS  ++ A+ + GY  P+PIQ + IP VL   DV   AQTGTGKTA F LP+ 
Sbjct: 1   MGFTSLGLSAPILKAIEELGYDTPSPIQKQAIPAVLSGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +    R +    R LIL PTRELAAQ+ +N  KY ++  LT  ++ GG+    Q  KL
Sbjct: 61  ERLDNNQRVKGNHVRALILTPTRELAAQIQENVFKYSRHQRLTSQVVFGGVKINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DVL+ TPGR++D + +  +  + +E+LV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGCDVLVATPGRLMDLYQQKAIKFDQLEVLVLDEADRMLDMGFIHDIRKILNLLPKKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + +P  I   + +    T      + Y    ++ A +   L
Sbjct: 181 NLLFSATFSAEIRQLAKGLVNDPVEI---SVTPQNSTAVTVEQSVYPADKRQKAPMLVEL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q   +  ++FC  K     L   L K   +  AIHGN  Q +R + LS FK G I+++
Sbjct: 238 ITQGKWQQVLVFCRTKHGANRLAQFLNKAEITAAAIHGNKSQGARTRALSEFKTGEIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NFD+PN AE+Y+HRIGRTGRAG  GKAF+LV  ++   +  
Sbjct: 298 VATDIAARGIDIPQLPQVVNFDLPNVAEDYVHRIGRTGRAGEAGKAFSLVEADEASDLFG 357

Query: 360 IEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY---- 413
           IE+LI+K +    L G   +   P  K+D       +   P   KS+  +++ K +    
Sbjct: 358 IERLIQKVLPRFTLEGFQPTKALPESKLDTRPIKPKKPKKPKKPKSSNAEQQNKPHETTG 417

Query: 414 ----SSQKSHIPLKESEKISKLQQDIQENDADS 442
               +  K H   K S +    ++   + +A++
Sbjct: 418 KATQTKNKRHFGAKNSARRPNQKRRFNKENAET 450


>gi|313668514|ref|YP_004048798.1| ATP-dependent RNA helicase [Neisseria lactamica ST-640]
 gi|313005976|emb|CBN87433.1| putative ATP-dependent RNA helicase [Neisseria lactamica 020-06]
          Length = 462

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 159/453 (35%), Positives = 235/453 (51%), Gaps = 10/453 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L   D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPSALDGRDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QRLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPSDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    ++P+ IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK I +K+  L  +      P  K   A      K     +KS G+   KK       
Sbjct: 360 KIEKYINRKLPELTIE---GMEPTRKRKPAGGKPKGKGGWSERKSGGWRGDKKPGKEGFG 416

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
                E  K    ++D  +   +  GF+G   A
Sbjct: 417 GKTRGEGFKKEGFKKDGFKKTGE--GFKGKRKA 447


>gi|258577027|ref|XP_002542695.1| ATP-dependent RNA helicase p62 [Uncinocarpus reesii 1704]
 gi|237902961|gb|EEP77362.1| ATP-dependent RNA helicase p62 [Uncinocarpus reesii 1704]
          Length = 1336

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 133/380 (35%), Positives = 212/380 (55%), Gaps = 3/380 (0%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
             F + G    V+  V   G+ KPTPIQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 920  SFDEAGFPQYVISEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 979

Query: 62   ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +      A    P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 980  HINAQPLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPRGPQIRDL 1039

Query: 120  ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 1040 ARGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 1099

Query: 180  TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            T ++SAT   E+++++ +FL +  ++ + +   +A       V   + + K+  ++Q + 
Sbjct: 1100 TCMWSATWPKEVRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMIQHME 1159

Query: 240  QSQDTMKNGIIFCNQKKNV-VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +  D  K+ I+     K V   +   L + G+   +IHG+  Q  R  +L+ FK G   +
Sbjct: 1160 RIMDDKKSKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPI 1219

Query: 299  MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
            MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG +G A TL   ++ K   
Sbjct: 1220 MVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGANGTAITLFTTDNAKQAR 1279

Query: 359  AIEKLIEKKVDWLNGDLSSL 378
             +  ++ +    ++  L+ +
Sbjct: 1280 DLVNILTESKQQIDPRLAEM 1299


>gi|496902|emb|CAA56074.1| translation initiation factor [Homo sapiens]
          Length = 411

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 99  CLDI---QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPSATQVV 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 216 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 274 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+G+ GR G A   V  +DI+ +  IE
Sbjct: 334 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGQYGRKGVAINFVKNDDIRILRDIE 393

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 394 QYYSTQIDEMPMNVADL 410


>gi|257091933|ref|YP_003165574.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044457|gb|ACV33645.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 474

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 145/393 (36%), Positives = 233/393 (59%), Gaps = 26/393 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+FA++GL P ++ A+ D+GY +PTP+Q + IP  ++  D+   +QTG+GKTA+F+LP L
Sbjct: 1   MNFAEIGLHPAILKALTDSGYSEPTPVQQQAIPPAIEGRDLMVSSQTGSGKTAAFMLPAL 60

Query: 61  TI-----------------------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK 97
                                     ++ R +   PR L+L PTRELA QV    EKYG+
Sbjct: 61  HRFALQERPAAVPRPSERGAARPRGHDRQRFQAAQPRMLVLTPTRELALQVTAATEKYGR 120

Query: 98  NYNLTVALLI-GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEAD 156
             +   A+ I GG+P+  Q + L R  ++L+ TPGR++DH + GK+  + ++ILV+DEAD
Sbjct: 121 QLHHVRAVAILGGMPYPKQMELLGRNPEILVATPGRLIDHMSSGKIDFSQLQILVLDEAD 180

Query: 157 RMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
           RMLDMGFI  I+ I +  P +RQTLLFSAT+   + ++++   +   RI+V+  S+  + 
Sbjct: 181 RMLDMGFIEDIERIVAATPGSRQTLLFSATLDGTVGELAQRMTRAALRIQVDATSARHDN 240

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
           IE           K    L   L    T+   ++F   K++   +   L   G +  A+H
Sbjct: 241 IEQRMHFVDDLAHKNR--LLDHLLRDATIDQALVFTATKRDADTVSDRLNVAGLNAAALH 298

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G++ Q +R + L+  + G ++++VA+D+AARG+D+P + HVFN+D+P  AE+Y+HRIGRT
Sbjct: 299 GDMHQGARNRTLAAMRRGQVRILVATDVAARGIDVPTITHVFNYDLPKFAEDYVHRIGRT 358

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           GRAGR+G A +LV   +  ++  IE+  ++ + 
Sbjct: 359 GRAGRNGLAISLVHHAEHFNVRKIERFTKQPIP 391


>gi|251796145|ref|YP_003010876.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
 gi|247543771|gb|ACT00790.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
          Length = 535

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 155/400 (38%), Positives = 237/400 (59%), Gaps = 11/400 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+ GL PKV+ A+ + G+ + TPIQ K+IP+ +   D+ G AQTGTGKTA+F +P++ 
Sbjct: 3   TFAEFGLEPKVLQAITELGFEESTPIQDKSIPIAMAGSDMIGQAQTGTGKTAAFGIPLIN 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +     R+     LI+ PTRELA QVAD   K  K   L    + GG     Q + L++
Sbjct: 63  KISINEERIVA---LIMTPTRELAIQVADEIGKLTKYKGLRSLPIYGGQEIGRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH NR  + + +++ +V+DEAD MLDMGF+  IQ+I   VP  RQTL
Sbjct: 120 KPQIIIGTPGRLLDHINRKTIKLEDVQTVVLDEADEMLDMGFMEDIQSILKQVPEERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +QK+++ FL+NP+ + V +   TA TI+      +  + ++       L  
Sbjct: 180 LFSATMPPNIQKLAQQFLKNPEHVAVISKQVTAPTIQQ---NYFEVHERQKFEALCRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            ++ +  IIF   K+ V  L   L+K+G++   +HG++ Q  R  ++  F++G+I ++VA
Sbjct: 237 MESPELAIIFGRTKRRVDELSEGLQKRGYTADGLHGDLSQNQRDNVMRKFRDGSIDVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HV NFD+P   E+Y+HRIGRTGRAG+ G A++ V   ++ H+  IE
Sbjct: 297 TDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGSAYSFVTPREVDHLHFIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           K+  +++         L    E I+  Q   A +   I Q
Sbjct: 357 KVTRQRISKKP-----LPSLAEAIEGKQRLTAERVLEIVQ 391


>gi|193214029|ref|YP_001995228.1| DEAD/DEAH box helicase domain-containing protein [Chloroherpeton
           thalassium ATCC 35110]
 gi|193087506|gb|ACF12781.1| DEAD/DEAH box helicase domain protein [Chloroherpeton thalassium
           ATCC 35110]
          Length = 431

 Score =  174 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 153/410 (37%), Positives = 231/410 (56%), Gaps = 10/410 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F  + L+P ++ A+ + GY  PT IQ   IP  +   D+   AQTGTGKTA+F LP+L
Sbjct: 4   INFESISLNPSILRALKELGYETPTAIQAAAIPEAILGKDILATAQTGTGKTAAFALPIL 63

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               E     +R PR LIL PTRELA Q+ +N   Y +   L   +++GG+P   Q K L
Sbjct: 64  HRLGENRSYDIRAPRALILTPTRELALQIDNNIRLYARYLRLRTGVIMGGVPAHPQIKML 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R  D+L+ TPGR++D F++G + ++ I+  V+DEADRMLDMGFI  I+ I SL P   Q
Sbjct: 124 RRNPDILVATPGRLIDLFDQGFIGLDQIQTFVLDEADRMLDMGFIDDIRRIESLQPRDHQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT++ E++ ++   L+ P RIEV   SS A+ I    +       ++       L
Sbjct: 184 TLLFSATLSPEIEALASRMLREPVRIEVAPVSSVADNITQKVLFVEQNNKREL---LHNL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++ +K  ++F   K+   ++   L + G S  AIH +  QR+R + L  F  G I ++
Sbjct: 241 FKENDIKRALVFTRTKQRANHVAEQLIRLGISADAIHSSKSQRARQRALMLFDRGKINVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HV N+++P+  ENY+HRIGRT RAG  G A +    ++++ +  
Sbjct: 301 VATDIAARGIDVDGISHVINYELPDDPENYVHRIGRTARAGASGTALSFCDADEVRMLKG 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           IEKL +  +   +      N P   I +A  +   K    PQ      RR
Sbjct: 361 IEKLTKSSIAICD------NNPFHSIAVASMHKVAKAGNKPQYFQKKPRR 404


>gi|297704172|ref|XP_002828993.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Pongo
           abelii]
          Length = 483

 Score =  174 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 159/472 (33%), Positives = 237/472 (50%), Gaps = 31/472 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  LSE---DPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 123 ADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI---QNITSLVPFTR 178
             V+I TPGR      +     +  I  LV+DEADR+L+ G   +    + I + VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPAHR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQ 237
           QTLLFSAT+TD L+++       P   E   P ST E ++  ++             L Q
Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQ 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             Q +    + IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK    +
Sbjct: 241 RFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI  +
Sbjct: 301 ILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLV 360

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK------ 411
            AIE+ I+KK++  + + + +   L      Q N  R+   I  ++  FD +K+      
Sbjct: 361 HAIEEQIKKKLEEFSVEEAEVLQIL-----TQVNVVRRECEIKLEAAHFDEKKEINKRKQ 415

Query: 412 ------------NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
                          ++ + I  K      K+++ ++   A   G +G  P 
Sbjct: 416 LILEGKDPDLEAKRKAELAKIKQKNRRFKEKVEETLKRQKAGRAGHKGRPPR 467


>gi|294893710|ref|XP_002774608.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239880001|gb|EER06424.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 520

 Score =  174 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 130/381 (34%), Positives = 204/381 (53%), Gaps = 2/381 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F   G    ++  +  AG+V PTPIQI+  P+ +   D+ GIA+TG+GKT +F+LP +
Sbjct: 111 VTFEQAGFPDYILHELAQAGFVAPTPIQIQGWPVAMSGRDMVGIAETGSGKTLAFLLPAI 170

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L++ PTRELA Q+ +   K+GK+  +      GG+P   Q + 
Sbjct: 171 VHINAQPYLQRGDGPIVLVMAPTRELAVQIQEECNKFGKSSKIKNTCCYGGVPRGPQARD 230

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G ++ I TPGR++D     +  +  +  LV+DEADRMLDMGF P I+ ITS +   R
Sbjct: 231 LSEGVEICIATPGRLIDFLESQRTNLRRVTYLVLDEADRMLDMGFEPQIRKITSQIRPDR 290

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLL+SAT   E+Q ++ +  +           +              Q  +K   L+ L
Sbjct: 291 QTLLWSATWPKEVQGLARDLCREEPVHINVGTLTLKACHNVTQYVDVVQEYEKRDRLKVL 350

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+        +IF + K+   +L  +L   G+    IHG+  Q  R  +L  FK G   +
Sbjct: 351 LERVMDGSKLLIFTDTKRGADDLTRTLRMDGWPALCIHGDKKQEERDWVLHEFKSGKSPI 410

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+D+A+RGLD+ D+ HV N+D P + E+Y+HRIGRTGRAG  G A+T    + IK   
Sbjct: 411 MIATDVASRGLDVKDIRHVVNYDFPGQIEDYVHRIGRTGRAGCKGNAYTFFTPDKIKMAR 470

Query: 359 AIEKLIEKKVDWLNGDLSSLN 379
            + +++ +    ++ +L  L+
Sbjct: 471 DLVQILREANQTVSPELERLS 491


>gi|237793963|ref|YP_002861515.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Ba4 str.
           657]
 gi|229261675|gb|ACQ52708.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Ba4 str.
           657]
          Length = 425

 Score =  174 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 171/430 (39%), Positives = 256/430 (59%), Gaps = 11/430 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   +  A+ + GY K TPIQ K+IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L K +   + PR +   +L PTRELA Q+A++FE YGK  NL   ++ GG+    Q K
Sbjct: 61  QNLSKDKKANKNPRPIRALVLAPTRELAIQIAESFECYGKYINLKSVVIFGGVSQNPQTK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+LI TPGR+LD FN+  + + NIE  V+DEADRMLDMG I  ++ I S +P  
Sbjct: 121 VLREGVDILIATPGRMLDLFNQKYIDLRNIEFFVLDEADRMLDMGMIHDVKKIISKLPKI 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  E+ K+ ++ +++P R+EV   SST +TI       Y    K+   L +
Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTI---TQEVYHVRKKQKRALLK 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++++ ++F   K+    +   L + G    AIHGN  Q +R + L+NFKEG I+
Sbjct: 238 HLLKDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HVFN+++P+  E Y+HRIGRTGRAG  G A +    E+ K +
Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357

Query: 358 DAIEKLIEKKVDWL---NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
            AIEKLI K++  +      +  +N    K +  ++N+ ++  P  ++  G  R   N  
Sbjct: 358 KAIEKLINKEIPVVEDHPYKIRHINENEVKKENTKNNYNKR--PFSKRQGGNCRYSNNRR 415

Query: 415 SQKSHIPLKE 424
              S   +K+
Sbjct: 416 KNNSTKQIKK 425


>gi|126659493|ref|ZP_01730626.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110]
 gi|126619227|gb|EAZ89963.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110]
          Length = 478

 Score =  174 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 147/388 (37%), Positives = 225/388 (57%), Gaps = 7/388 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS   +  +   G+  PT IQ K IPL+L+ HDV G +QTGTGKTA++ LP+L
Sbjct: 3   ISFENLGLSEARINQLQTLGFESPTEIQEKAIPLLLEGHDVLGQSQTGTGKTAAYSLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++    R    + LIL PTRELA QVA+  + +     L +  + GG   E Q + LE
Sbjct: 63  EQIDT---RNSNVQALILTPTRELAQQVAEALKDFSTERRLYILTVYGGQSIERQIRSLE 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++D   R KL+++++   V+DEAD ML MGFI  ++ I    P  R T
Sbjct: 120 RGVQIVVGTPGRVIDLLERKKLVLDSLRWAVLDEADEMLSMGFIDDVKTILRKTPDARNT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM  E++ +   FL++P  + V    +    I+         +SK+ A   Q + 
Sbjct: 180 ACFSATMPREIRDLVNQFLKSPVTVSVERTQAAPTRIDQHLYMVPRGWSKRKA--LQPIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  ++ IIF   K+   +L   L++ G SV   HGN+ Q  R +++  F++G I+L+V
Sbjct: 238 EIEDPESAIIFVRTKQTASDLTSKLQEIGHSVDEYHGNLSQSQRERLVHRFRDGKIKLVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++ HV N+D+P+ +E YIHRIGRTGRAG+ G A +L+   D + +  I
Sbjct: 298 ATDIAARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLIEPIDRRMVRQI 357

Query: 361 EKLIEKKVD--WLNGDLSSLNPPLEKID 386
           EK + +K++   L          LEK+ 
Sbjct: 358 EKRLRQKLETCKLPSRSQVEAKRLEKLQ 385


>gi|3097266|emb|CAA76677.1| translation initiation factor [Pisum sativum]
          Length = 407

 Score =  174 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 195/377 (51%), Gaps = 4/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G+   ++  +   G+ KP+ IQ + +  ++Q  DV   AQ+GTGKT+   L +  
Sbjct: 34  TFEGMGIKEDLLRGIYAYGFEKPSAIQQRAVAPIIQGRDVIAQAQSGTGKTSMIALTVCQ 93

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     V+    LI+ PTRELA Q        G + N+     IGG       +KLE 
Sbjct: 94  VVDTSVREVQA---LIVSPTRELATQTEKVILAIGDHINIQAHACIGGKSVGEDIRKLEH 150

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DE+D ML  GF   I ++   +P   Q  
Sbjct: 151 GVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVC 210

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L S T+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L    +  
Sbjct: 211 LISRTLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCVIFMIL 270

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +   N K+ V  L   +    F+V ++HG++ Q+ R  I+  F+ GT ++++ 
Sbjct: 271 SPSL-KLLYSVNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFRAGTTRVLIT 329

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +  IE
Sbjct: 330 TDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIE 389

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  ++  L
Sbjct: 390 QYYSTQIDEMPMNIGDL 406


>gi|317492534|ref|ZP_07950962.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919526|gb|EFV40857.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 465

 Score =  174 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 170/454 (37%), Positives = 257/454 (56%), Gaps = 9/454 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS +++ AV + GY +PTPIQ + IP+VLQR D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDTLGLSAELLRAVEEQGYREPTPIQSQAIPVVLQRRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            IL +        R  R LIL PTRELAAQ+ +N   Y K  NL   ++ GG+    Q  
Sbjct: 61  QILSQDTQPAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQHAVDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE+++++   L NP  +EV   ++ +E +         +  ++      
Sbjct: 181 RQNLLFSATFSDEIKELANKLLTNPASVEVARRNTASEQVAQSVHFVDKRRKRELLSQL- 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK G+I+
Sbjct: 240 --IGTHNWQQVLVFTRTKYGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGSIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAECTGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE+L+++++  +  +    +P ++   I     ++       +S G  R + N  S+ 
Sbjct: 358 RDIERLLKREIPRIAIEGYEPDPSIKADPIQNGRQSQGRGQGRGQSQG--RSQGNGQSRD 415

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
                 +    +  Q+  Q         RG+ PA
Sbjct: 416 GARSGDKPRANNGGQRRAQGEGRKPES-RGDAPA 448


>gi|226947893|ref|YP_002802984.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A2 str.
           Kyoto]
 gi|226840806|gb|ACO83472.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A2 str.
           Kyoto]
          Length = 425

 Score =  174 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 172/425 (40%), Positives = 259/425 (60%), Gaps = 11/425 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   +  A+ + GY K TPIQ K+IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPIL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L K +   + PRT+   +L PTRELA Q+ ++FE YGK  NL  A++ GG+    Q K
Sbjct: 61  QNLSKDKKVNKNPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+LI TPGR+LD FN+  + + NIE  V+DEADRMLDMG I  ++ I S +P  
Sbjct: 121 ALREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPRG 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  E+ K+ ++ +++P R+EV   SST +TI       Y    K+   L +
Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTI---TQEVYHVRKKQKRSLLK 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   +++++ ++F   K+    +   L + G    AIHGN  Q +R + L+NFKEG I+
Sbjct: 238 HLLKDESIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HVFN+++P+  E Y+HRIGRTGRAG  G A +    E+ K +
Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357

Query: 358 DAIEKLIEKKVDWL---NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS--TGFDRRKKN 412
            AIEKLI K++  +      +  +N    K +  ++N+ +K +   Q       + R+KN
Sbjct: 358 KAIEKLIHKEIPVVEDHPYKIRHINEDEVKKENTKNNYNKKPSSKRQGGNWRYSNNRRKN 417

Query: 413 YSSQK 417
            S+++
Sbjct: 418 NSTKQ 422


>gi|89074347|ref|ZP_01160829.1| ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89049834|gb|EAR55375.1| ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 455

 Score =  174 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 162/463 (34%), Positives = 254/463 (54%), Gaps = 14/463 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL+  +V AV + GY  PTPIQ K IP+ L   ++   AQTGTGKTA FVLP+L
Sbjct: 1   MPFSKLGLNDSIVKAVTEMGYTSPTPIQEKAIPVALTGKNLMAAAQTGTGKTAGFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L+ G   R +  R LIL PTRELA QV DN ++Y K+ NL    + GG+ +E Q ++L
Sbjct: 61  QMLDDGTKVRAKRIRALILAPTRELAVQVEDNIKQYSKHLNLASMAMYGGVDYEPQKRRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + IE LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IEGVDILVATPGRLLDMYTKRAIHFDAIETLVLDEADRMLDMGFIEDINKIVERLPVDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT++D+++ +++  ++NP  I   + +  A                  + L   L
Sbjct: 181 NMLFSATLSDQVRFLAKTAVRNPIEI---SVAKDASADPKIDQWLVTVDKDMKSALLSSL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      +IF   K     L   LEK+G S  + H    Q  R ++L +FK G +Q +
Sbjct: 238 IQEQKWDQALIFIETKHGAAKLVTQLEKRGISAESFHSGRSQAVRSQLLEDFKNGKLQYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ +A+RG+DI  +  V N+D+P   E Y+HRIGRTGRAG  G+A + V++++ K++  
Sbjct: 298 IATGVASRGIDIEQLTRVVNYDLPFPPEEYVHRIGRTGRAGASGEAISFVSRDNFKNLCM 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE L+   +    + G +   + P+  ++  +    +   P    S   +R+ +  +  K
Sbjct: 358 IESLLGHLITRKEIEGFVPKKDVPVSVLN-YKPKFKKPMTPRDGDSESSERKPRRDTRTK 416

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
           ++ P   + K +K ++     D D+      +P    P+N+ K
Sbjct: 417 NNAPRGGNTKSTKPKRRKPITDRDT-----GIPRI--PRNKAK 452


>gi|302754310|ref|XP_002960579.1| hypothetical protein SELMODRAFT_164382 [Selaginella moellendorffii]
 gi|302771598|ref|XP_002969217.1| hypothetical protein SELMODRAFT_91413 [Selaginella moellendorffii]
 gi|300162693|gb|EFJ29305.1| hypothetical protein SELMODRAFT_91413 [Selaginella moellendorffii]
 gi|300171518|gb|EFJ38118.1| hypothetical protein SELMODRAFT_164382 [Selaginella moellendorffii]
          Length = 401

 Score =  174 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G++  ++  V + G+ +P+ IQ + +  +++  DV   AQ+GTGKT+   + +  
Sbjct: 29  QFEKMGINESLLRGVFEYGFERPSAIQQRALIPIMRGRDVIAQAQSGTGKTSMIGIAVNQ 88

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     V+    L+L PTRELA Q A      G + N+     IGG  F    +KLE 
Sbjct: 89  LIDTSVREVQA---LVLSPTRELADQTAKVVLTLGSHMNVQAHTCIGGKSFSEDIRKLEH 145

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R      +++ILV+DE+D ML  GF   I +    +P   Q +
Sbjct: 146 GVHVVSGTPGRVYDMLKRRTFRTRHVKILVLDESDEMLSRGFKEQIIDCYRYLPPDLQVV 205

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 206 LVSATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL--YD 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   +    F+V ++HG + Q+ R  I+  F+EG  ++++ 
Sbjct: 264 TLTITQAVIFCNTKRKVEWLSEKMRSSNFTVSSMHGEMPQKERDTIMKEFREGQTRVLIT 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 324 TDVWARGLDVQQVSLVINYDLPNSRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRDIE 383

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +VD +  +++ L
Sbjct: 384 QYYSTQVDEMPMNVADL 400


>gi|26344810|dbj|BAC36054.1| unnamed protein product [Mus musculus]
          Length = 411

 Score =  174 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 39  TFDTMGLRGDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 99  CLDI---QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 216 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 274 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 334 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 393

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 394 QYYSTQIDEMPMNVADL 410


>gi|255020706|ref|ZP_05292767.1| Cold-shock DEAD-box protein A [Acidithiobacillus caldus ATCC 51756]
 gi|254969860|gb|EET27361.1| Cold-shock DEAD-box protein A [Acidithiobacillus caldus ATCC 51756]
          Length = 615

 Score =  174 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 140/373 (37%), Positives = 219/373 (58%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+D  L+  +  AV + GY +P+PIQ ++IP +L   DV G+AQTGTGKTA+F LP+L
Sbjct: 10  LSFSDFALAEPLQRAVREIGYEQPSPIQAQSIPPLLAGRDVIGLAQTGTGKTAAFALPLL 69

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + ++     +R P+ L+L PTRELA QVA+  + Y K       L I  G     Q K+L
Sbjct: 70  SRVDLS---LRFPQILVLAPTRELAIQVAEAMQSYAKFLPGFHVLPIYGGQSMGLQLKQL 126

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGRI DH  R  L ++ ++ +V+DEAD ML MGFI  ++ I    P  RQ
Sbjct: 127 QRGVQVVVGTPGRIQDHLRRETLKLDRLQAVVLDEADEMLRMGFIDAVEEILKHTPTQRQ 186

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM + +++++  +L++P  I + + +ST   I   +      +          +
Sbjct: 187 VALFSATMPEAIRRIARTYLRDPLEIRIKSTTSTVAAIRQRYWLVSGTHKLDALTRILEV 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +     IIF   K   V L   LE +G++  A++G++ Q  R + +   K G++ ++
Sbjct: 247 EDSNAW---IIFVRTKTATVELAERLEARGYACGALNGDMTQAMREQTIERVKSGSLDIV 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+PN  E Y+HRIGRTGRAGR G+A   VA  +   + A
Sbjct: 304 VATDVAARGLDVERITHVINYDIPNDTEAYVHRIGRTGRAGRKGEAILFVAPRERYLLKA 363

Query: 360 IEKLIEKKVDWLN 372
           IE+   + ++ ++
Sbjct: 364 IERATGQPIEPMH 376


>gi|226330865|ref|ZP_03806383.1| hypothetical protein PROPEN_04786 [Proteus penneri ATCC 35198]
 gi|225201660|gb|EEG84014.1| hypothetical protein PROPEN_04786 [Proteus penneri ATCC 35198]
          Length = 475

 Score =  174 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 164/456 (35%), Positives = 253/456 (55%), Gaps = 17/456 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGLS  ++ A+ + GY  PTPIQ + I  +L   DV   AQTGTGKTA+F LP+L 
Sbjct: 3   DFTSLGLSEALLRAIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPILE 62

Query: 62  ILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L +   +    +  + LIL PTRELAAQ+A+N + Y +   +   ++ GG+    Q  K
Sbjct: 63  KLSQSATKTKGRQPVKALILTPTRELAAQIAENVKAYSRYIPIRSLVVFGGVSINPQMMK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G DVLI TPGR+LD  ++  + ++ +E+LV+DEADRMLDMGFI  I+ + + +P  R
Sbjct: 123 LRGGVDVLIATPGRLLDLEHQNAVDLSRVEVLVLDEADRMLDMGFIHDIRRVINKLPKKR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT + E+  ++ + L NP  I V   +S AE++       +    K+   L   
Sbjct: 183 QNLLFSATFSKEITGLANSLLNNPVSISVAPKNSAAESV---DQYVHLVDKKRKTELLSH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   +     +IF   K     L   L   G    AIHGN  Q +R + L++FK+G ++ 
Sbjct: 240 LIGLENWPQVLIFTRTKHGANKLAEHLNADGIKSAAIHGNKSQGARTRALADFKDGKLKA 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + +V NF++P  AE+Y+HRIGRTGRA   GKA +LV  ++   + 
Sbjct: 300 LVATDIAARGLDIDQLPYVVNFELPQVAEDYVHRIGRTGRAAATGKAISLVCVDEHGLLA 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-------KK 411
            IE+L+++++  L  +    +P ++    A   H +  N  P++S+G   R        +
Sbjct: 360 DIERLLKREIPRLALEGYDPDPSIK----AAPLHKKPKNNAPRRSSGGHGRADIRGKDNR 415

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
           N + +++     +     K +++ +  D    G  G
Sbjct: 416 NNARKENDSEGSKDGGRYKSKENYRNKDGSRTGKLG 451


>gi|325120651|emb|CBZ56206.1| DEAD-box ATP-dependent RNA helicase 34, related [Neospora caninum
           Liverpool]
          Length = 411

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L+  ++  +   G+ KP+ IQ + I  +L RHD  G AQ+GTGKTA+F +  L 
Sbjct: 39  SFDALKLNESLLRGIYSYGFEKPSAIQQRGIKPILDRHDTIGQAQSGTGKTATFAIAALQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     +   + LIL PTRELA Q+       G    +     +GG        KL+ 
Sbjct: 99  LIDYN---INNCQVLILAPTRELAQQIQKVVLALGDYLQVRCHACVGGTVVRDDIAKLKA 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D   +  L ++++++ ++DEAD ML  GF   I ++   +P   Q  
Sbjct: 156 GVHMVVGTPGRVHDMMEKRHLRVDDMKLFIMDEADEMLSRGFKSQIYDVFKKLPPDVQVA 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  ++ +++  F+++PKRI V     T E I   +VA   +  K   L       
Sbjct: 216 LFSATMPQDILELTTKFMRDPKRILVKNDELTLEGIRQFYVAVEKEDWKLETLCDL--YE 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   II+CN ++ V  L   + ++ F+V ++HG++DQ+SR  I+  F+ G+ ++++ 
Sbjct: 274 TLTITQAIIYCNTRRKVDFLTSKMSERDFTVSSMHGDMDQKSREMIMREFRSGSTRVLIT 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V   D++ +  IE
Sbjct: 334 TDLLARGIDVQQVSLVINYDLPATKENYIHRIGRSGRFGRKGVAINFVTSSDVEQLKEIE 393

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    +++ +  +++  
Sbjct: 394 KHYNTQIEEMPMEVAEF 410


>gi|237836123|ref|XP_002367359.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii
           ME49]
 gi|14595111|emb|CAC43441.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii]
 gi|211965023|gb|EEB00219.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii
           ME49]
 gi|221484990|gb|EEE23280.1| conserved hypothetical protein [Toxoplasma gondii GT1]
 gi|221505957|gb|EEE31592.1| eukaryotic translation initiation factor 4A, putative [Toxoplasma
           gondii VEG]
          Length = 412

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L+  ++  +   G+ KP+ IQ + I  +L RHD  G AQ+GTGKTA+F +  L 
Sbjct: 40  SFDALKLNESLLRGIYSYGFEKPSAIQQRGIKPILDRHDTIGQAQSGTGKTATFAIAALQ 99

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     +   + LIL PTRELA Q+       G    +     +GG        KL+ 
Sbjct: 100 LIDYN---INNCQVLILAPTRELAQQIQKVVLALGDYLQVRCHACVGGTVVRDDIAKLKA 156

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D   +  L ++++++ ++DEAD ML  GF   I ++   +P   Q  
Sbjct: 157 GVHMVVGTPGRVHDMMEKRHLRVDDMKLFIMDEADEMLSRGFKSQIYDVFKKLPPDVQVA 216

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  ++ +++  F+++PKRI V     T E I   +VA   +  K   L       
Sbjct: 217 LFSATMPQDILELTTKFMRDPKRILVKNDELTLEGIRQFYVAVEKEDWKLETLCDL--YE 274

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   II+CN ++ V  L   + ++ F+V ++HG++DQ+SR  I+  F+ G+ ++++ 
Sbjct: 275 TLTITQAIIYCNTRRKVDFLTSKMSERDFTVSSMHGDMDQKSREMIMREFRSGSTRVLIT 334

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V   D++ +  IE
Sbjct: 335 TDLLARGIDVQQVSLVINYDLPATKENYIHRIGRSGRFGRKGVAINFVTSSDVEQLKEIE 394

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    +++ +  +++  
Sbjct: 395 KHYNTQIEEMPMEVAEF 411


>gi|150391088|ref|YP_001321137.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149950950|gb|ABR49478.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 549

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 146/450 (32%), Positives = 240/450 (53%), Gaps = 9/450 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LG+S ++   +  +   +PTP+Q++ IP +L + DV   AQTGTGKT +F+LP+L 
Sbjct: 4   KFAKLGISEEIENVLNKSDITEPTPVQLQAIPPLLAQRDVMAQAQTGTGKTLAFILPILE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +          + LI+ PTRELA Q+    +K  +   + +    GG   E Q +KL+ 
Sbjct: 64  RVNV---EKPTIQALIITPTRELAIQITAETKKLAEVKGINILAAYGGQDVEQQLRKLKG 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH  R  + +  + +LV+DEAD+ML MGF+  +++I + +P  RQ +
Sbjct: 121 SIHIIIGTPGRLLDHLRRKTINLGKLSMLVLDEADQMLHMGFLRDVEDIMTHIPKRRQNM 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM ++++ ++E ++++P +I+V +   T + I    + T  +  +          +
Sbjct: 181 FFSATMPNQVRTLAEQYMKDPVQIQVQSKRVTLDEIRQVVIETTDRGKQDLLCQLFDEYN 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFC  K+  + L  +L   G++   +HG++ Q  R K++  FK+  IQ +VA
Sbjct: 241 PFM---AIIFCRTKRRAIALNEALINLGYNSDELHGDLTQAKREKVMKAFKKSKIQYLVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V H+FN+D+P   E+YIHRIGRTGRAG  G A T +   D   +  IE
Sbjct: 298 TDVAARGLDIEGVTHIFNYDIPQDGESYIHRIGRTGRAGETGMAITFMTSRDRDELKIIE 357

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           K+I+  +D        ++   E+ D  +    R N+       G    KK     K   P
Sbjct: 358 KVIKMDLDVQKSKSGKIDLDEEEQDTKKSPKGRGNDKSKDFKKGKYGDKKGKPGDKKGRP 417

Query: 422 LKESEK---ISKLQQDIQENDADSLGFRGN 448
             + ++         D ++  +D+ G  G+
Sbjct: 418 GDKRDRPTDKKGRPGDKRDRPSDNKGRPGD 447


>gi|91787410|ref|YP_548362.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
 gi|91696635|gb|ABE43464.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
          Length = 492

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 166/388 (42%), Positives = 238/388 (61%), Gaps = 8/388 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L+  +  AV + GY   TPIQ + IP+VLQ  DV G AQTGTGKTA+F LP+L 
Sbjct: 4   SFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFSLPLLQ 63

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + K       P        +L PTRELA QVA+  + Y K+ NL  A++ GG+  + Q 
Sbjct: 64  RMLKHENASTSPARHPVRALVLLPTRELAVQVAEQVKLYAKHTNLRSAVVFGGMDMKPQT 123

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P 
Sbjct: 124 LELKQGVEVLVATPGRLLDHIEAKNTVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPK 183

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R TLLFSAT + E+++++ ++LQ+P  IEV   ++TA T+E  F +  A   ++     
Sbjct: 184 QRITLLFSATFSPEIKRLASSYLQDPVTIEVARSNATASTVEQHFYSVGADDKRRA---L 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             +  +  MK   +F N K     L  SLE++G    A+HG+  Q  R+K L  FK+G +
Sbjct: 241 HQILKERGMKQAFVFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLKALDAFKKGEV 300

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+V +D+AARGLDI DV  VFNFDVP  AE+Y+HRIGRTGRAG  G A + VA  D + 
Sbjct: 301 DLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVSFVASSDQRL 360

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
           +  IEKLI+ K++    +     P + +
Sbjct: 361 VADIEKLIKTKIELEPIEFDEDRPRISE 388


>gi|228942602|ref|ZP_04105134.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228982168|ref|ZP_04142457.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis Bt407]
 gi|228777520|gb|EEM25798.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis Bt407]
 gi|228817028|gb|EEM63121.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326943251|gb|AEA19147.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 481

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 143/409 (34%), Positives = 235/409 (57%), Gaps = 10/409 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPIKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++K+S  ++ +P  IE+     T + IEH     +     +   L + + +
Sbjct: 182 LFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEH---TLFEVIEDEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L +  +    IHG + Q  R +++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLNRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           + I  ++    G  S      EK    +  HA+   PI +K    D  K
Sbjct: 359 EYIGFEIPKAIGP-SKEEVMKEKAAFEEKIHAK---PIIKKDKNADINK 403


>gi|149199772|ref|ZP_01876803.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa
           HTCC2155]
 gi|149137177|gb|EDM25599.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa
           HTCC2155]
          Length = 437

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 161/406 (39%), Positives = 242/406 (59%), Gaps = 6/406 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL  +++  +   GY +PTPIQ + IP++L+  D+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFENLGLRTEILTGIKFQGYTQPTPIQEQAIPIILKGGDILAGAQTGTGKTAAFTLPIL 60

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L     R    PR L+L PTRELAAQV ++ E YGK  ++   ++ GG+    Q +KL
Sbjct: 61  HLLSTADNRGGHRPRALVLTPTRELAAQVGESVELYGKGLDIRSTVIFGGVGINPQKQKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+++ TPGR+LD   +  L ++ IE L++DEADRMLDMGFI  I+ I  LVP  RQ
Sbjct: 121 RKGVDIVVGTPGRLLDLAGQKALDLSRIEYLILDEADRMLDMGFIHDIKKIIKLVPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSAT + +++ +SE+ L+NP  +EV   +++AET++           +         
Sbjct: 181 TLFFSATYSKDIKALSESILRNPSLVEVARQNTSAETVDQSVYHVGKNKKRNLLSSL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++F   K     L + L   G +  AIHGN  Q +R + L++FK   ++++
Sbjct: 238 IRDGEWNQVLVFTRTKHGANKLTNMLIADGITAAAIHGNKSQNARTRALADFKAIKVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV N+++P  AE+Y+HRIGRTGRAG  G+A +LVAKE+   + A
Sbjct: 298 VATDIAARGIDIDRLPHVVNYELPEIAEDYVHRIGRTGRAGCSGEAISLVAKEEASLLFA 357

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           IEKLI KKV+   + G         +  +  +    R+N+    +S
Sbjct: 358 IEKLINKKVNVKEIPGITEKAPSQSQAREAEKELKKRRNDNRQNRS 403


>gi|228911292|ref|ZP_04075096.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis IBL 200]
 gi|228848310|gb|EEM93160.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis IBL 200]
          Length = 481

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 143/409 (34%), Positives = 236/409 (57%), Gaps = 10/409 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++K+S  ++ +P  IE+     T + IEH     +    ++   L + +  
Sbjct: 182 LFSATLPEDVEKLSRTYMNSPIHIEIKAAGITTDKIEH---TLFEVTEEEKLSLLKDVTI 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           + I  ++    G  S      EK    +  HA+   PI +K    D  K
Sbjct: 359 EYIGFEIPKAIGP-SKEEVMKEKAAFEEKIHAK---PIIKKDKNADINK 403


>gi|186475195|ref|YP_001856665.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184191654|gb|ACC69619.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 522

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 165/390 (42%), Positives = 230/390 (58%), Gaps = 8/390 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSEPLVRAVNELGYTSPTPIQQQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                +       R+ R LIL PTRELAAQV ++   YGK   L   ++ GG+    Q  
Sbjct: 61  QRLLTMPPAPGGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQID 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+++ TPGR+LDH  +  + ++++EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 ALRRGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++++ L  P  IEV   ++TAET+            ++      
Sbjct: 181 RQNLLFSATFSDEIKALADSLLDAPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHL- 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               Q      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+Q
Sbjct: 240 --IKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKNNTLQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++++ +
Sbjct: 298 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLL 357

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLEKI 385
             IEKLI++ V  + + G     N   E I
Sbjct: 358 KDIEKLIKRAVPQEVIAGYEPDPNARPEPI 387


>gi|308187815|ref|YP_003931946.1| ATP-dependent RNA helicase [Pantoea vagans C9-1]
 gi|308058325|gb|ADO10497.1| ATP-dependent RNA helicase [Pantoea vagans C9-1]
          Length = 442

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 137/431 (31%), Positives = 221/431 (51%), Gaps = 14/431 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ A+ + G+ +PT IQ   IP  L+  DV G A TGTGKTA+++LP + 
Sbjct: 5   TFSELELDESLLQALQEKGFTRPTVIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LI+ PTRELA QVAD+  +  K+ +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILIVTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E LV+DEADRMLDMGF   I+ I +   + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLVLDEADRMLDMGFAQDIETIAAETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT   D ++  +E  L  P  +E +      + I+  +        K    L   L
Sbjct: 185 MLFSATLEGDNIRDFAERLLNEPVELEADPSRRERKKIQQWYYRADDLQHK--TKLLIHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  +   I+F  +++ +  L   L + G     + G + Q  R + +    EG + ++
Sbjct: 243 LQQPDVTRSIVFVRKRERLHELVSWLHEAGIRSSYLEGEMVQAKRNEAIKRLSEGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV HVFN+D+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDIAARGIDVEDVSHVFNYDMPRTADTYLHRIGRTGRAGRKGIAISLVEAHDFVLLGK 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           I + + + +     D         ++         K    P K     +R +  +S+   
Sbjct: 363 ITRYVNEPIKARVID---------ELRPETRAPGAKTTGKPSKKV-LAKRAEKKASETEK 412

Query: 420 IPLKESEKISK 430
             +K+  + +K
Sbjct: 413 PRVKKRHRDAK 423


>gi|319426187|gb|ADV54261.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 467

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 158/432 (36%), Positives = 238/432 (55%), Gaps = 6/432 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F+ LGLS  +V A+ + GY  PTPIQ K IP++L   +V G AQTGTGKTASFVLP +
Sbjct: 1   MPFSKLGLSDPIVKAITELGYASPTPIQTKAIPVILSGKNVLGAAQTGTGKTASFVLPLL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +  + R +  R +IL PTRELA QV +N  +Y K   LT   + GG+    Q KKL
Sbjct: 61  QMFADAPKIRPKRVRAIILTPTRELAVQVEENIRQYAKYLPLTSMAMYGGVDAAPQKKKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + + +LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDELSVLVLDEADRMLDMGFIEDINKIIEKLPTQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++ +++  ++NP  IE++  ++TA  I+                     
Sbjct: 181 NLLFSATLSKQVRVLAKTAVENPVEIEISRNTATAPQIDQWLTTVDKDKKSALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      +IF   K+    L   LEK+  S  A H    Q  R ++L++FK G +  +
Sbjct: 238 IKEQAWDQALIFIQTKQGAAKLVSQLEKRDISAEAFHSGRSQAVREQLLADFKSGKLAFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +A+RG+DI  +  V N+D+P+ A++YIHRIGRTGRAG HG+A + V+K+D K++ A
Sbjct: 298 VATGVASRGIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGEHGEAISFVSKDDFKNLCA 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE+ +   +    + G       P+  +D    +   K     + + G  R  K  + + 
Sbjct: 358 IERRLGHLIVRKEVEGFAPKKEVPISILDFVPKHKPEKTFRPTESAAGTYRSAKEGTFET 417

Query: 418 SHIPLKESEKIS 429
           +      S K  
Sbjct: 418 AKAKKHRSAKSQ 429


>gi|188587881|ref|YP_001922673.1| putative ATP-dependent RNA helicase RhlE [Clostridium botulinum E3
           str. Alaska E43]
 gi|188498162|gb|ACD51298.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 432

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 158/423 (37%), Positives = 243/423 (57%), Gaps = 15/423 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL +   +  A+ +AGY  PTPIQ ++IP +L+  D  G AQTGTGKTA+F +P+L
Sbjct: 1   MLFKDLNIIEPIQKALTEAGYTNPTPIQEQSIPSLLEGKDFLGCAQTGTGKTAAFAIPVL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +    + R  + LIL PTRELA Q+ +NF  Y K+ N+   ++ GG+  + Q +
Sbjct: 61  QNIAKNQNKSDKSRTIKALILAPTRELAIQIEENFTLYSKHTNIKNTVIFGGVSQKPQTR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+LI TPGR+LD  ++  + ++N++  V+DEADRM DMG +  ++ I + +P  
Sbjct: 121 ILGEGVDILIATPGRLLDLIDQKYIDLSNVKHFVLDEADRMFDMGMVRDVKKIVAKLPKV 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  E++ +  + L++P ++EV   SST +TI         +  K   +   
Sbjct: 181 RQNLLFSATMPSEVKSLVNSILKDPVKVEVAPVSSTIDTITQGVYFVTKKDKKSLLVHLL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                +++K+ ++F   K    N+   L K G    AIHGN  Q +R   LSNFKEG I+
Sbjct: 241 ---KDESIKSLLVFSRTKYGANNIVKDLAKTGTESQAIHGNKSQNARQLALSNFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+  + HV N+D+P+  E Y+HRIGRTGRAG  G A +    ++   +
Sbjct: 298 VLVATDIAARGIDVDGLSHVINYDLPDVPETYVHRIGRTGRAGNSGVAISFCDVDEKSSL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-KKNYSSQ 416
             IEK I K +  +       N   E+I I +    RK     +K+T  +++ K+N+  +
Sbjct: 358 KDIEKTIGKNIPVMK------NVEFERIAITREPAQRKE--ADKKTTDANKKPKRNWYGE 409

Query: 417 KSH 419
           K  
Sbjct: 410 KRR 412


>gi|160897598|ref|YP_001563180.1| DEAD/DEAH box helicase domain-containing protein [Delftia
           acidovorans SPH-1]
 gi|160363182|gb|ABX34795.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
          Length = 504

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 168/421 (39%), Positives = 242/421 (57%), Gaps = 16/421 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L+  +  AV D GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L 
Sbjct: 4   SFSNLQLAESLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQ 63

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L +       P        +L PTRELA QVA    +Y K   L   ++ GG+  + Q 
Sbjct: 64  RLMRHENTSASPARHPVRALVLLPTRELADQVAQQIAQYAKYTKLRSTVVFGGMDMKPQT 123

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P 
Sbjct: 124 LELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSHLPK 183

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           TR TLLFSAT + E+++++ ++LQ+P  IEV       ET        Y+          
Sbjct: 184 TRTTLLFSATFSPEIKRLASSYLQDPVTIEVAR---PNETASTVEQRFYSVSDDDKRYAL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + L  Q  ++   +F N K     L  +LE+ G    A+HG+  Q  R+K L  FK G +
Sbjct: 241 RSLLKQRDIRQAFVFSNSKLGCARLTRALERDGLRATALHGDKSQDERLKALEAFKRGEV 300

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+V +D+AARGLDI DV  VFN+DVP  AE+Y+HRIGRTGRAG  G A TLV   D + 
Sbjct: 301 DLLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGIAVTLVTNHDARL 360

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  IEKLI+KK++           P+E    +     R  + +P++S+G   R+++  ++
Sbjct: 361 VGEIEKLIKKKINVEPC-------PMEDFRGSAPRGHR-FDELPRQSSGGYGRERDRGAE 412

Query: 417 K 417
           +
Sbjct: 413 R 413


>gi|90580587|ref|ZP_01236392.1| putative ATP-dependent RNA helicase SrmB [Vibrio angustum S14]
 gi|90438245|gb|EAS63431.1| putative ATP-dependent RNA helicase SrmB [Photobacterium angustum
           S14]
          Length = 416

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 205/371 (55%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF++L L  +++ A+ + GY +PT +Q + IP  L   DV   A TGTGKTA+F+LPM+ 
Sbjct: 3   DFSELELDSELLRAIEEIGYSRPTVVQAQAIPHALDGKDVMASAPTGTGKTAAFLLPMIQ 62

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    +   P  + IL PTRELA QVAD      K   L V  + GGI ++   + L 
Sbjct: 63  HLQDFPRKRPGPARILILTPTRELAIQVADQARALAKYTTLKVFTITGGISYDEHAEMLG 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR++++    K     IE L++DEADRMLDMGF   ++ +     + RQ+
Sbjct: 123 KTQDIVVATPGRLMEYIEAEKFDCRAIECLILDEADRMLDMGFGKIVERLNHECRWRRQS 182

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     +++ SE  L  P  +  +      + I   ++       K         
Sbjct: 183 LLFSATLEGKGVREFSETILNEPVEVNADPSRRERKKIHQMYLRCDNMDHKLA---LLEN 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  +  IIF   ++ +  L   LE  G     I G + Q +R  +++ F++G + ++
Sbjct: 240 IIKEQAERTIIFVKTRERLGILRGQLEAMGIPCNWIQGEMAQAARTNMITRFRDGVVNVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV NFD+P  AE Y+HRIGRT RAG+ G A +LV   D   I+ 
Sbjct: 300 IATDVAARGIDLPDVSHVINFDLPRTAEVYVHRIGRTARAGKKGTAISLVEAHDQSMIER 359

Query: 360 IEKLIEKKVDW 370
           I + ++++V  
Sbjct: 360 ISRYMKEEVQE 370


>gi|29347295|ref|NP_810798.1| putative ATP-dependent RNA helicase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29339194|gb|AAO76992.1| putative ATP-dependent RNA helicase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 374

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 155/372 (41%), Positives = 226/372 (60%), Gaps = 5/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L ++  ++ A+ + GY  PTPIQ K IP+ L + D+ G AQTGTGKTASF +P++
Sbjct: 1   MTFKELNITEPILKAIEEKGYTVPTPIQEKAIPVALAKKDILGCAQTGTGKTASFAIPII 60

Query: 61  TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L   KG  +    + LIL PTRELA Q+++  E Y K   +   ++ GG+    Q   
Sbjct: 61  QHLHLNKGEGKRSEIKALILTPTRELALQISECIEDYSKYTRIRHGVIFGGVNQRPQVDM 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD  N+G + ++NI+  V+DEADRMLDMGFI  I+ I   +P  +
Sbjct: 121 LHKGIDILVATPGRLLDLMNQGHIRLDNIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM D +  ++ + L+NP +I V   SST ++I       Y    K+ +LL   
Sbjct: 181 QTLFFSATMPDTIIALTNSLLKNPVKIYVTPKSSTVDSI---KQLVYFVEKKEKSLLLIS 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   ++ +IF   K N   +   L K G    AIHGN  Q +R   L NFK G  ++
Sbjct: 238 ILQKSEDRSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A T  ++E+ K I+
Sbjct: 298 MVATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGMALTFCSQEERKQIN 357

Query: 359 AIEKLIEKKVDW 370
            I+KL  KK++ 
Sbjct: 358 DIQKLTGKKLNR 369


>gi|85708371|ref|ZP_01039437.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
 gi|85689905|gb|EAQ29908.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
          Length = 484

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 157/436 (36%), Positives = 229/436 (52%), Gaps = 10/436 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLGLS  V+ A+   GY  PTPIQ + IP VL+  D+ GIAQTGTGKTA+F+LP + 
Sbjct: 3   QFSDLGLSQPVLQALDLKGYSTPTPIQEQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSID 62

Query: 62  ILEKGRARVRMPRTLI--LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L +   R+      +  L PTREL +Q+A + + YG    L V  ++GG        KL
Sbjct: 63  RLREADNRIPFKSCRMLVLAPTRELVSQIAASAKDYGALAGLKVQSIVGGTSVNKDRNKL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+LI TPGR+LD  ++    + ++E+LV+DEAD+MLD+GF+  ++ I+ LVP  RQ
Sbjct: 123 HRGTDILIATPGRLLDLIDQKAFNLGSVEVLVLDEADQMLDLGFVHALRRISQLVPKERQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ-- 237
           TL FSATM   ++++   +  NP ++ V   S+TAE I+           +    L    
Sbjct: 183 TLFFSATMPKAIKELVSGYCNNPVQVSVTPESTTAERIDQYLFMVQQDEKQSLLELILSG 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             +     +  +IF   K     +   L + G    AIHGN  Q  R + L  F+ G   
Sbjct: 243 RHKVPGEFERILIFTRTKHGADRVVKKLSRAGIPANAIHGNKSQPQRQRALDEFRRGKTM 302

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DIP V HV N+++PN  E Y+HRIGRT RAG+ G A    A+++  ++
Sbjct: 303 ILVATDVAARGIDIPGVSHVLNYELPNVPEQYVHRIGRTARAGKDGVAIAFCAEDERAYL 362

Query: 358 DAIEKLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
             I K    ++D LN        +  + P       A    A+K  P P  ++       
Sbjct: 363 KDIRKTTGAELDRLNLPENFRAVVEGVGPTKPAPRGATRVSAKKIKPKPAGASAGKPAGD 422

Query: 412 NYSSQKSHIPLKESEK 427
             S  K       S K
Sbjct: 423 GSSKPKKPGGKHPSRK 438


>gi|66472376|ref|NP_001018522.1| probable ATP-dependent RNA helicase DDX47 [Danio rerio]
 gi|63102032|gb|AAH95776.1| Zgc:112350 [Danio rerio]
          Length = 512

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 153/462 (33%), Positives = 241/462 (52%), Gaps = 32/462 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG++  +  A    G+ KPT IQI+ IP+ LQ  DV G+A+TG+GKT +F +P+L 
Sbjct: 80  SFKELGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAVPVLQ 139

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     R+     L+L PTRELA Q+A+ F+  G +  +  A+++GGI   +Q   L +
Sbjct: 140 SLLACAQRLHT---LVLTPTRELAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAK 196

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V+I TPGR++DH    K      ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 197 KPHVVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVIPRDRRT 256

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    LQ+P +  V++  +T + ++          SK        + 
Sbjct: 257 FLFSATMTKKVQKLQRAALQDPVKCSVSSKYATVDKLQQ---FYIFIPSKYKDCYLVSIL 313

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + ++FC    N   +   L   G +   +HG + Q  R+  L+ FK  +  +++
Sbjct: 314 NELAGNSFMVFCGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLL 373

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GK+ T V + D++    I
Sbjct: 374 ATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 433

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI KK+         +   +E++  AQ                F R +   SS+K   
Sbjct: 434 EALIGKKLPAFPTQEEEVMMLVERVSEAQR---------------FARIEMKESSEKRKR 478

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMP--AFMLPKNRGK 460
           P           Q++ E+   S G R  +    F  P  RG+
Sbjct: 479 PSA--------AQEVDEDGEQSSGVRKKVKGGGFRRPSRRGR 512


>gi|187777742|ref|ZP_02994215.1| hypothetical protein CLOSPO_01334 [Clostridium sporogenes ATCC
           15579]
 gi|187774670|gb|EDU38472.1| hypothetical protein CLOSPO_01334 [Clostridium sporogenes ATCC
           15579]
          Length = 425

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 172/425 (40%), Positives = 260/425 (61%), Gaps = 11/425 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   +  A+ + GY K TPIQ K+IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L K +   + PRT+   +L PTRELA Q+ ++FE YGK  NL  A++ GG+    Q K
Sbjct: 61  QNLSKDKKVNKNPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+LI TPGR+LD FN+  + + NIE  V+DEADRMLDMG I  ++ I S +P  
Sbjct: 121 ALREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKV 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  E+ K+ ++ +++P R+EV   SST +TI       Y    K+   L +
Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTI---TQEVYHVRKKQKRSLLK 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   +++++ ++F   K+    +   L + G    AIHGN  Q +R + L+NFKEG I+
Sbjct: 238 HLLKDESIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HVFN+++P+  E Y+HRIGRTGRAG  G A +    E+IK +
Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEEIKSL 357

Query: 358 DAIEKLIEKKVDWL---NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS--TGFDRRKKN 412
            AIEKLI K++  +      +  +N    K +  ++N+ ++ +   Q       + R+KN
Sbjct: 358 KAIEKLIHKEIPVVEDHPYKIRHINEDEVKKENTKNNYNKRPSSKRQGGNWRYSNNRRKN 417

Query: 413 YSSQK 417
            S+++
Sbjct: 418 NSTKQ 422


>gi|67459931|ref|NP_001019988.1| probable ATP-dependent RNA helicase DDX46 [Danio rerio]
 gi|82277867|sp|Q4TVV3|DDX46_DANRE RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46
 gi|66473312|gb|AAY46301.1| DEAD box protein 46 [Danio rerio]
          Length = 1018

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 145/449 (32%), Positives = 232/449 (51%), Gaps = 15/449 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S KV+ A+    Y KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 341 TWVQCGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 400

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               ++       P  +I+ PTRELA Q+    +K+ K+  L V  + GG     Q  +L
Sbjct: 401 HILDQRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGISEQIAEL 460

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     N     +  +  +VIDEADRM DMGF P +  I   V  
Sbjct: 461 KRGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRP 520

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S               +  KK   L 
Sbjct: 521 DRQTVMFSATFPRTMEALARRILSKPVEVQVGGRSVVCSD--VEQHVIVIEEEKKFLKLL 578

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L       + IIF +++++   L   L K  +   ++HG IDQ  R  I+++FK G  
Sbjct: 579 EILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGAC 638

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + +   ++
Sbjct: 639 RLLVATSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEGQARY 698

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     L+G  SS+   LE++        +    I + S+GF  +   +  +
Sbjct: 699 SGDILKALE-----LSG--SSVPAELEQLWTNFKEQQKAEGKIIKSSSGFSGKGFKF-DE 750

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGF 445
             H    E +K+ K    + ++D +    
Sbjct: 751 TEHALANERKKLQKWALGLHDSDDEDTAL 779


>gi|329115283|ref|ZP_08244038.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
 gi|326695726|gb|EGE47412.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
          Length = 488

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 156/391 (39%), Positives = 233/391 (59%), Gaps = 12/391 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+DL L+P ++ A+ + GY  PTPIQ ++IP +LQ  D+ G+AQTGTGKTASF LP+  
Sbjct: 51  KFSDLALAPPLLKALAEQGYDTPTPIQERSIPYLLQGRDLLGLAQTGTGKTASFALPILE 110

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I        + PR L+L PTREL AQ++D+F+ Y ++   T A++ GG+    Q + +
Sbjct: 111 HLIKNPRANTPKQPRVLVLAPTRELVAQISDSFKAYARHMKFTQAVVFGGVGQGRQVEAM 170

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DVL+  PGR+LD   +G + ++ +EILV+DEADRMLDMGF+  I+ I + VP  RQ
Sbjct: 171 RRGVDVLVAAPGRLLDLMGQGFIDLSGLEILVLDEADRMLDMGFVRDIRRIMTFVPEQRQ 230

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   ++ ++ + L +P R+EV  PSST + I+   +       K+       +
Sbjct: 231 TLLFSATMPRSIEDLAASLLNDPARVEVAPPSSTVDRIQQAVMFVNGAGDKRD--ALLNM 288

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   ++F   K     +   L K      AIHGN  Q +R + +  F+ G+++++
Sbjct: 289 VESPKVSRAVVFTLMKHEANKVAEFLNKNNVVAEAIHGNKSQGARERAMKGFRSGSVKVL 348

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV HVFN+D+PN  E+Y+HRIGRT RAGR G A +    E    +  
Sbjct: 349 VATDIAARGIDVDDVSHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSFCDAEQRAWLRD 408

Query: 360 IEKLIEKKVDWL--------NGDLSSLNPPL 382
           IE+ I K V  +          + S++ PP+
Sbjct: 409 IERTIGKTVPVVRDHPWHSDEAEASTMRPPV 439


>gi|258541735|ref|YP_003187168.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256632813|dbj|BAH98788.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256635870|dbj|BAI01839.1| RNA helicase [Acetobacter pasteurianus IFO 3283-03]
 gi|256638925|dbj|BAI04887.1| RNA helicase [Acetobacter pasteurianus IFO 3283-07]
 gi|256641979|dbj|BAI07934.1| RNA helicase [Acetobacter pasteurianus IFO 3283-22]
 gi|256645034|dbj|BAI10982.1| RNA helicase [Acetobacter pasteurianus IFO 3283-26]
 gi|256648089|dbj|BAI14030.1| RNA helicase [Acetobacter pasteurianus IFO 3283-32]
 gi|256651142|dbj|BAI17076.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654133|dbj|BAI20060.1| RNA helicase [Acetobacter pasteurianus IFO 3283-12]
          Length = 445

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 156/391 (39%), Positives = 233/391 (59%), Gaps = 12/391 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+DL L+P ++ A+ + GY  PTPIQ ++IP +LQ  D+ G+AQTGTGKTASF LP+  
Sbjct: 3   KFSDLALAPPLLKALAEQGYDTPTPIQERSIPYLLQGRDLLGLAQTGTGKTASFALPILE 62

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I        + PR L+L PTREL AQ++D+F+ Y ++   T A++ GG+    Q + +
Sbjct: 63  HLIKNPRANTPKQPRVLVLAPTRELVAQISDSFKAYARHMKFTQAVVFGGVGQGRQVEAM 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DVL+  PGR+LD   +G + ++ +EILV+DEADRMLDMGF+  I+ I + VP  RQ
Sbjct: 123 RRGVDVLVAAPGRLLDLMGQGFIDLSGLEILVLDEADRMLDMGFVRDIRRIMTFVPEQRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   ++ ++ + L +P R+EV  PSST + I+   +       K+       +
Sbjct: 183 TLLFSATMPRSIEDLAASLLNDPARVEVAPPSSTVDRIQQAVMFVNGAGDKRD--ALLNM 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   ++F   K     +   L K      AIHGN  Q +R + +  F+ G+++++
Sbjct: 241 VESPKVSRAVVFTLMKHEANKVAEFLNKNNVVAEAIHGNKSQGARERAMKGFRSGSVKVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV HVFN+D+PN  E+Y+HRIGRT RAGR G A +    E    +  
Sbjct: 301 VATDIAARGIDVDDVSHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSFCDAEQRAWLRD 360

Query: 360 IEKLIEKKVDWL--------NGDLSSLNPPL 382
           IE+ I K V  +          + S++ PP+
Sbjct: 361 IERTIGKTVPVVRDHPWHSAEAEASTMRPPV 391


>gi|227357070|ref|ZP_03841440.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus
           mirabilis ATCC 29906]
 gi|227162762|gb|EEI47725.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus
           mirabilis ATCC 29906]
          Length = 611

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 144/391 (36%), Positives = 232/391 (59%), Gaps = 7/391 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS  ++ A+ D GY KP+PIQ + IP +L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 7   MTFADLGLSAPILTALNDLGYEKPSPIQQQCIPFLLDGNDVLGMAQTGSGKTAAFSLPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L++    ++ P+ L+L PTRELA QVA+  E + K+      + +  G  ++ Q + L
Sbjct: 67  HNLDES---LKAPQILVLAPTRELAVQVAEAIEDFSKHLPKVNVVALYGGQRYDVQLRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  V++ TPGR+LDH NRG L ++ ++ LV+DEAD ML MGFI  ++NI S +P   Q
Sbjct: 124 RQGPQVVVGTPGRLLDHLNRGTLDLSKLKGLVLDEADEMLRMGFIEDVENILSKIPAEHQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+ +PK + + +  +T   I   +  TY     +        
Sbjct: 184 TALFSATMPEAIRRITRRFMNDPKEVRIQSSVTTRPDISQSYWMTYGARKNEA---LIRF 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K G + ++
Sbjct: 241 LEAEDFDAAIIFVRTKNATLEVAETLERNGYNSAALNGDMNQSLREQTLERLKNGRLDIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 301 IATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAILFVDNRERRLLRN 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           IE+ ++  +  +    + L     +   AQ 
Sbjct: 361 IERTMKMSIPEVELPNAELISQRRQEKFAQQ 391


>gi|197287236|ref|YP_002153108.1| ATP-dependent RNA helicase DeaD [Proteus mirabilis HI4320]
 gi|194684723|emb|CAR46715.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus
           mirabilis HI4320]
          Length = 616

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 144/391 (36%), Positives = 232/391 (59%), Gaps = 7/391 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS  ++ A+ D GY KP+PIQ + IP +L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 12  MTFADLGLSAPILTALNDLGYEKPSPIQQQCIPFLLDGNDVLGMAQTGSGKTAAFSLPLL 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L++    ++ P+ L+L PTRELA QVA+  E + K+      + +  G  ++ Q + L
Sbjct: 72  HNLDES---LKAPQILVLAPTRELAVQVAEAIEDFSKHLPKVNVVALYGGQRYDVQLRAL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  V++ TPGR+LDH NRG L ++ ++ LV+DEAD ML MGFI  ++NI S +P   Q
Sbjct: 129 RQGPQVVVGTPGRLLDHLNRGTLDLSKLKGLVLDEADEMLRMGFIEDVENILSKIPAEHQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+ +PK + + +  +T   I   +  TY     +        
Sbjct: 189 TALFSATMPEAIRRITRRFMNDPKEVRIQSSVTTRPDISQSYWMTYGARKNEA---LIRF 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K G + ++
Sbjct: 246 LEAEDFDAAIIFVRTKNATLEVAETLERNGYNSAALNGDMNQSLREQTLERLKNGRLDIL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 306 IATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAILFVDNRERRLLRN 365

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           IE+ ++  +  +    + L     +   AQ 
Sbjct: 366 IERTMKMSIPEVELPNAELISQRRQEKFAQQ 396


>gi|221308280|ref|ZP_03590127.1| hypothetical protein Bsubs1_02593 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312602|ref|ZP_03594407.1| hypothetical protein BsubsN3_02569 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317526|ref|ZP_03598820.1| hypothetical protein BsubsJ_02533 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321802|ref|ZP_03603096.1| hypothetical protein BsubsS_02604 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321314132|ref|YP_004206419.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
 gi|134039178|sp|P96614|CSHA_BACSU RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|291482867|dbj|BAI83942.1| hypothetical protein BSNT_00786 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320020406|gb|ADV95392.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis BSn5]
          Length = 494

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 148/383 (38%), Positives = 225/383 (58%), Gaps = 8/383 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  LS  ++ A+   G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F +P++
Sbjct: 3   ITFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLV 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + +++ PTRELA QV++   K G++    V  + GG     Q + L+
Sbjct: 63  EKINP---ESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  ++++ TPGR+LDH NR  + +NN+  +V+DEAD ML+MGFI  I++I S VP   QT
Sbjct: 120 KNPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +++++E F+  P+ ++V     T   I+           +K       L 
Sbjct: 180 LLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQ---FYLEVQERKKFDTLTRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM  L  FKEG I+++V
Sbjct: 237 DIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFDVP   E+Y+HRIGRTGRAG+ G A T +   +   + AI
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           E+  ++K+D +     +L+  LE
Sbjct: 357 EQTTKRKMDRMK--EPTLDEALE 377


>gi|16077525|ref|NP_388339.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|1881268|dbj|BAA19295.1| ydbR [Bacillus subtilis]
 gi|2632758|emb|CAB12265.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 511

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 148/383 (38%), Positives = 225/383 (58%), Gaps = 8/383 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  LS  ++ A+   G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F +P++
Sbjct: 20  ITFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLV 79

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + +++ PTRELA QV++   K G++    V  + GG     Q + L+
Sbjct: 80  EKINP---ESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALK 136

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  ++++ TPGR+LDH NR  + +NN+  +V+DEAD ML+MGFI  I++I S VP   QT
Sbjct: 137 KNPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +++++E F+  P+ ++V     T   I+           +K       L 
Sbjct: 197 LLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQ---FYLEVQERKKFDTLTRLL 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM  L  FKEG I+++V
Sbjct: 254 DIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFDVP   E+Y+HRIGRTGRAG+ G A T +   +   + AI
Sbjct: 314 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 373

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           E+  ++K+D +     +L+  LE
Sbjct: 374 EQTTKRKMDRMK--EPTLDEALE 394


>gi|311103372|ref|YP_003976225.1| ATP-dependent RNA helicase RhlE 1 [Achromobacter xylosoxidans A8]
 gi|310758061|gb|ADP13510.1| ATP-dependent RNA helicase RhlE 1 [Achromobacter xylosoxidans A8]
          Length = 506

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 155/382 (40%), Positives = 224/382 (58%), Gaps = 8/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  ++ A+ + GY  PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L +
Sbjct: 7   FADLGLADSLLRAIAETGYTAPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFTLPILHL 66

Query: 63  LEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L + +    +   PR LIL PTREL AQV ++ + YGK   L   ++ GG+    Q   L
Sbjct: 67  LMQKKPELRKPGRPRCLILTPTRELTAQVEESVQTYGKYTPLNSMVMFGGVNINPQISAL 126

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+L+ TPGR+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 127 RKPLDILVATPGRLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKILALLPKQRQ 186

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ ++   L NP  + V   ++  E +          + +         
Sbjct: 187 NLLFSATFSDEIRTLARGVLNNPGEVSVTPRNTATELVTQTVHMVEQHHKRDLISHI--- 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      ++F   K     L   L K G +  AIHGN  Q +R + L+ FK+ T+ ++
Sbjct: 244 IRESGWHQVLVFTRTKHGANRLAEKLVKDGLTAAAIHGNKSQSARTRALAGFKDSTVTVL 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV   +IK +  
Sbjct: 304 VATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDNSEIKLLKD 363

Query: 360 IEKLIEKKVDWLNGDLSSLNPP 381
           IE+LI+K ++     +    PP
Sbjct: 364 IERLIKKTIERKP--VEGWTPP 383


>gi|297568967|ref|YP_003690311.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924882|gb|ADH85692.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 442

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 168/452 (37%), Positives = 256/452 (56%), Gaps = 11/452 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL  +++ AV ++GY +P+PIQ K IP+VLQ  D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFNELGLRAELLRAVSESGYSQPSPIQSKAIPVVLQGGDLLAGAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +  A+   P    +L PTRELAAQV  +F  YGK+  L   ++ GG+    Q   L
Sbjct: 61  QRLSEKPAQKSRPIRALVLTPTRELAAQVEASFRLYGKHLPLRTTVVFGGVSIRPQITTL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LDH ++  + ++ +E+LV+DEADRMLDMGF+  I+ I +L+P  RQ
Sbjct: 121 RQGVDILVATPGRLLDHVSQKTIDLSKVEMLVLDEADRMLDMGFLRDIRKILALLPIQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++++++  L++P  IEV   ++ AE ++           +         
Sbjct: 181 NLLFSATFSDEIKRLADGLLKSPTLIEVARRNTAAEQVDQAIYRIDKGLKRALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S    +  ++F   K     L   L K G S  AIHGN  Q +R + L++FK+G ++++
Sbjct: 238 ISGQNWQQVLVFTRTKHGANRLAGQLAKDGISSTAIHGNKSQGARTRALADFKQGKVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRAG  G A + V  E+ K +  
Sbjct: 298 VATDIAARGLDIEQLPHVVNYELPNVPEDYVHRIGRTGRAGCSGNAISFVCAEEHKQLHD 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE L+++++  L      L     ++D  +H   R+       +T    R++     +S 
Sbjct: 358 IESLLKRRIP-LQEQEPGLTLTRSEVDTVRHRTPRRP------ATPAASRRQRTGGNRST 410

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
               ++ K  K Q       A      G+ P 
Sbjct: 411 AARPDAGKAKKPQPGANARSARPKAHYGSSPR 442


>gi|134300131|ref|YP_001113627.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134052831|gb|ABO50802.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 482

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 147/410 (35%), Positives = 232/410 (56%), Gaps = 12/410 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  V  ++   G+ + TPIQ K IP+ L   D+ G A TGTGKTA+F +PM+ 
Sbjct: 3   SFYELGLSKSVSESIKLMGFEEATPIQEKAIPIALSGGDLIGQAHTGTGKTAAFGIPMVE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              + +  ++    LI+ PTRELA QVA+   + G+   +    + GG     Q + L++
Sbjct: 63  RFSRQQDTIQG---LIITPTRELAVQVAEEMNRIGQVKGIHTLPVYGGQDINRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++DH  R  + +N + ++V+DEAD ML+MGFI  I+ I   VP  RQTL
Sbjct: 120 KPHIIVGTPGRLMDHMKRKTIRLNELTMVVLDEADEMLNMGFIEDIEEILQQVPEERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT++  +Q+++  FL+NP+ I +     T  +I     +      K+   +      
Sbjct: 180 LFSATISKPIQELARRFLKNPEFIAIKAKEVTVPSI---DQSYVEVQEKQKFEVLSTFLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             +    I+F   K+ V  L  +L K+G+S   IHG++ Q  R  +L  FKEG I+++VA
Sbjct: 237 IQSPDLAIVFGRTKRRVDELYEALSKRGYSAEGIHGDLTQSKRESVLRQFKEGIIEVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G+A T V   ++ H+  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGEAITFVTPREMNHLRLIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           ++ + K+           P ++++   Q   A +      +  GF+  ++
Sbjct: 357 RITKHKISRRPI------PTIKEVIEGQQRLAVEKLLKVVEEGGFEHYRR 400


>gi|295402561|ref|ZP_06812510.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112527|ref|YP_003990843.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1]
 gi|294975409|gb|EFG51038.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217628|gb|ADP76232.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1]
          Length = 465

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 151/382 (39%), Positives = 230/382 (60%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS +++ A+   G+ + TPIQ +TIPL LQ  DV G AQTGTGKTA+F +P++ 
Sbjct: 3   TFYELGLSNELMKAIRRMGFEETTPIQAETIPLSLQNKDVIGQAQTGTGKTAAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++    L++ PTRELA QV++   K G    + V  + GG     Q + L++
Sbjct: 63  KVDVTNEAIQG---LVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIGRQIRALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI+DH NR  L + N+  +V+DEAD ML+MGFI  I+ I S VP  RQTL
Sbjct: 120 RPHIIVGTPGRIIDHINRKTLHLENVHTVVLDEADEMLNMGFIDDIEAILSNVPEKRQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + +++++E F+  P+ ++V     T   I+           KK   +   L  
Sbjct: 180 LFSATMPEPIRRIAERFMNEPQIVKVKAKEMTVPNIQQ---YYLEVQEKKKFDILTRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G++   IHG++ Q  R+ +L  FKEG+I+++VA
Sbjct: 237 IQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   +I  +  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHNIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  ++K++ +     +L+  LE
Sbjct: 357 RTTKRKMERMKP--PTLDEALE 376


>gi|223041595|ref|ZP_03611794.1| ATP-dependent RNA helicase [Actinobacillus minor 202]
 gi|223017570|gb|EEF15982.1| ATP-dependent RNA helicase [Actinobacillus minor 202]
          Length = 443

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 137/439 (31%), Positives = 222/439 (50%), Gaps = 17/439 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F +L LSP+++ A+   GY +PT +Q +TIP  L   D+ G A TGTGKTA+F+LP +
Sbjct: 8   LTFEELDLSPQLLKALHKKGYKRPTSVQAQTIPYALDGRDLLGSAPTGTGKTAAFLLPAI 67

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QVA+  E+  +  NL++A + GG+ ++   +  
Sbjct: 68  QHLLDYPRRKPGAPRILILTPTRELAMQVAEQAEELAEFTNLSIATITGGVAYQNHGEVF 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR++ +          +EIL+ DEADRML MGF    + I +   + + 
Sbjct: 128 NKNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT+  EL       L N        PS         +             L   L
Sbjct: 188 TWLFSATLEGELLVDFAERLLNDPVQIEAEPSRRERKKIQQWYYHADNLD-HKTKLLARL 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                M+  I+F  +++ V  L  +L K+G     + G++ Q  R + ++  K+  + ++
Sbjct: 247 IKDFEMEKVIVFVRRREAVRELSDTLRKRGLRSTYLEGDMAQTQRNQAINRLKDSVVNVL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++D+AARG+DI DV  V NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D K +  
Sbjct: 307 VSTDVAARGIDIDDVDFVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGK 366

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           I++  E+ +      +  L P             R   P   +     +++K    Q+  
Sbjct: 367 IKRYTEEPLK--PRIIEGLEP-------------RTKAPKDGELNSKTKKEKARIKQRKE 411

Query: 420 IPLKESEKISKLQQDIQEN 438
              + ++  +K++    +N
Sbjct: 412 AKKEAAKAKTKVRHKDTKN 430


>gi|238878985|gb|EEQ42623.1| eukaryotic initiation factor 4A-12 [Candida albicans WO-1]
          Length = 399

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 205/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P ++  +   G+  P+ IQ + I  ++   D    AQ+GTGKTA+F + ML 
Sbjct: 27  TFESMNLKPDLLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLE 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    + +  + LIL PTRELA Q+ +  +  G   N+     IGG       KKL++
Sbjct: 87  VIDT---KSKECQALILSPTRELAIQIQNVVKHLGDYMNIHTHACIGGKNVGEDVKKLQQ 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR++D   R  L   NI++L++DEAD +   GF   I  I   +P + Q +
Sbjct: 144 GQQIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYEIYKHLPPSVQVV 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  E+ +++  F  +P +I V     +   I+  +V    +  K   L       
Sbjct: 204 VVSATLPREVLEMTSKFTTDPVKILVKRDEISLSGIKQYYVQCEREDWKFDTLCDL--YD 261

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K  V  L   ++KQ F+V A+HG++ Q  R  I+++F+ G  +++++
Sbjct: 262 NLTITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFRRGNSRVLIS 321

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A  L+ K+D+  +  +E
Sbjct: 322 TDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVVTLKELE 381

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    K+  +  +++ +
Sbjct: 382 KYYSTKIKEMPMNINDI 398


>gi|51244788|ref|YP_064672.1| ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54]
 gi|50875825|emb|CAG35665.1| probable ATP-dependent RNA helicase [Desulfotalea psychrophila
           LSv54]
          Length = 423

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 174/427 (40%), Positives = 246/427 (57%), Gaps = 9/427 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ K IP++++  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFNTLGLSAPLLKAVAEKGYDTPSPIQAKAIPVIMEGKDVMAAAQTGTGKTAAFTLPIL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L + + RV+  +    IL PTRELAAQ+ ++   YGK  +LT A++ GG+    Q K+
Sbjct: 61  ELLSQSKRRVQANQARVLILTPTRELAAQIGESVTTYGKGLSLTSAVIFGGVNINPQMKR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+L+ TPGR+LD   +  +  N +EILV+DEADRMLDMGFI  I+ + + +P  R
Sbjct: 121 LRGGVDILVATPGRLLDLHRQNAIKFNRLEILVLDEADRMLDMGFINDIRKVLAFLPKER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT +  +  ++     NP  I V  P+ST E I       Y    K+   L   
Sbjct: 181 QNLMFSATFSSSINNLARGMFNNPVEISVTPPNSTVEII---DQCIYPVDKKQKPALLIQ 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   +     ++F   K     L   L+K+G +  AIHGN  Q +R K L+ FK GT+Q+
Sbjct: 238 LIRDNKWGQTLVFSKTKHGANRLVGQLQKKGINAAAIHGNKSQSARTKALAEFKNGTVQI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV NFD+P+  E+YIHRIGRTGRAG  G+A +LV  ++   + 
Sbjct: 298 LVATDIAARGLDIDLLPHVVNFDLPHVQEDYIHRIGRTGRAGASGEAISLVCADEFALLA 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IE+LI+K    L         P+  +  +  N        P+K+T   R ++  S   S
Sbjct: 358 DIERLIKK---ILPRKSVEGFEPVHPLPESCLNTRPFRAKSPKKNTE-GRTRRQGSRPNS 413

Query: 419 HIPLKES 425
             P K S
Sbjct: 414 RGPKKPS 420


>gi|127511538|ref|YP_001092735.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126636833|gb|ABO22476.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 491

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 177/468 (37%), Positives = 254/468 (54%), Gaps = 13/468 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV D GY  P+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTSLGLSAPILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +G   R +  R L+L PTRELAAQ+A++   YG++  L  A++ GG+    Q  +L
Sbjct: 61  ELLSQGPRARSKQVRALVLTPTRELAAQIAESVTTYGQHLPLRSAVVFGGVGISPQISQL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG D+L+ TPGR+LD + +  +  + +E LV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 KRGVDILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAILPPKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++ +++  + NP  I V   +STA T++               +     
Sbjct: 181 NLMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAALVKL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  ++F   K     L   LE +G +  AIHGN  Q +R K L+NFK G ++++
Sbjct: 238 IQQGDWQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+PN  E+Y+HRIGRTGRAG  GKA +LV+ E+ K +  
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKLLAD 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPP-------LEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           IE+LI K +     ++    P        L      QH   R   P        +R    
Sbjct: 358 IERLIGKLLPR--AEVEGFEPTHTLPETNLTPKRHGQHKGPRNPKPKSNSQRSSNRSSNG 415

Query: 413 YSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
             S K+  P +  +     +   +     S G           +N+GK
Sbjct: 416 QRSDKAGQPRRGDQAQGNKEGQGRRRTGASTGTSKPASEGQQAQNQGK 463


>gi|325108112|ref|YP_004269180.1| DEAD/DEAH box helicase [Planctomyces brasiliensis DSM 5305]
 gi|324968380|gb|ADY59158.1| DEAD/DEAH box helicase domain protein [Planctomyces brasiliensis
           DSM 5305]
          Length = 475

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 145/370 (39%), Positives = 217/370 (58%), Gaps = 5/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L   +  A+    Y  PTPIQ +TIP +L   D+ G AQTGTGKTA+F LP+L 
Sbjct: 3   SFSDLNLIAPIQRAIKAQNYTTPTPIQAQTIPEILNGRDILGSAQTGTGKTAAFALPILD 62

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L +   R     P  L+L PTRELA QV D+F  YG++  +  AL+ GG+    Q + L
Sbjct: 63  YLGRQNRRPIPNEPTVLVLVPTRELAIQVGDSFATYGRHLRVRHALIYGGVNQFRQVRDL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG  +L+ TPGR+LD  N+G + ++ +E+  +DEADRM+DMGF+P ++ I   +P  RQ
Sbjct: 123 NRGVHILVATPGRLLDLMNQGHIDLSRLELFAVDEADRMMDMGFLPDLKKIIREIPQERQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +L FSAT+  ++ ++S   L +P  + ++    + E IE   +    Q  K        +
Sbjct: 183 SLFFSATLPPKINELSRELLTDPVSVTIDPEVRSVEAIEQSLIYVDQQSKKDL---LLDI 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++ +   ++F   K     L   L K G S  AIHGN  Q +R K L  F+   ++++
Sbjct: 240 LNEEGIGQTVVFTKTKFCANRLEEQLRKSGVSAIAIHGNKSQNARQKALLAFRNEKVKVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV NF++P+  E+Y+HRIGRTGRAG  G A +  +  +   + A
Sbjct: 300 VATDVAARGIDVDGVTHVINFELPHEPESYVHRIGRTGRAGASGIAISFCSNAERAELRA 359

Query: 360 IEKLIEKKVD 369
           IE+ IE+KV 
Sbjct: 360 IERQIEQKVP 369


>gi|307251282|ref|ZP_07533202.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306856680|gb|EFM88816.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 445

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 140/435 (32%), Positives = 228/435 (52%), Gaps = 11/435 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F +L L+P+++ A+   GY +PT +Q +TIP  L   D+ G A TGTGKTA+F+LP +
Sbjct: 8   MTFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAI 67

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QVA+  + + +   L++A + GG+ ++   +  
Sbjct: 68  QHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEVF 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR++ +          +EIL+ DEADRML MGF    + I +   + + 
Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT+  EL     + + +     ++   S  E  +      +A   +    L   L
Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLK-IDAEPSRRERKKIQQWYYHADNVEHKTKLLARL 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S   M+  I+F  ++++V  L  +L K+G     + G++ Q  R + ++  K+G + ++
Sbjct: 247 ISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDGVVNVL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI DV +V NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D K +  
Sbjct: 307 VATDVAARGIDINDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGK 366

Query: 360 IEKLIEK--KVDWLNGDLSSLNPPLE-------KIDIAQHNHARKNNPIPQKSTGFDRRK 410
           I++  E+  K   + G       P +       K + A+    ++      K+    R K
Sbjct: 367 IKRYTEELLKPRVIEGLEPRTKAPKDGELNTTTKKEKARIKKRKEAKKEAAKAKVKVRHK 426

Query: 411 KNYSSQKSHIPLKES 425
              +  K   P  E+
Sbjct: 427 DTKNVGKRRKPASEA 441


>gi|170701603|ref|ZP_02892549.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170133486|gb|EDT01868.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 571

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 166/446 (37%), Positives = 245/446 (54%), Gaps = 17/446 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+  ++ A+ + GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 86  TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 145

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L    +    P        IL PTRELA QVA N   Y K+ +L  A++ GG+    Q 
Sbjct: 146 RLLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQM 205

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 206 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 265

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +                +  
Sbjct: 266 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKHSAVVQL 325

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                   +K  I+FCN K     L  +LE+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 326 L---RDRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEI 382

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 383 EALVATDVAARGLDIVELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 442

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  IEKLI++ ++       +L+ P      ++H H  +      + +G    ++    +
Sbjct: 443 LADIEKLIKRPLEVQTL---ALDKP------SRHRHDERGGERAGERSGERAGERGGRRE 493

Query: 417 KSHIPLKESEKISKLQQDIQENDADS 442
           +       + +    ++       ++
Sbjct: 494 RDEHRGASARRSGGSERGGHHRRHEA 519


>gi|158514834|sp|A3LS22|RRP3_PICST RecName: Full=ATP-dependent rRNA helicase RRP3
          Length = 484

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 139/419 (33%), Positives = 225/419 (53%), Gaps = 7/419 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L P+++ A+    + KPTPIQ + IP  L+  D+ G+AQTG+GKTA+F +P+L 
Sbjct: 72  TFSELKLVPELLEAIQQMKFSKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQ 131

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L + +        L+L P RELA Q+ + F+  G    +    L+GG+    Q + L R
Sbjct: 132 SLWEAQTPYF---GLVLAPARELAYQIKETFDALGSTMGVRTVCLVGGMDMMDQARDLMR 188

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGRI+DH  +     +  ++  V+DEAD++LD+ F P +  I   +P  R T
Sbjct: 189 KPHIIIATPGRIMDHLEHTKGFSLKMLKYFVMDEADKLLDLEFGPVLDKILKQIPSKRTT 248

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT++++K+    L NP R+ V++   TA+ +     +               L 
Sbjct: 249 YLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNL---IQSMMLVSDGYKNTYLIHLL 305

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   K+ IIF   + +           GFS   +HG++ Q  R+  L+ FK GT  +++
Sbjct: 306 NEFVGKSIIIFARTRAHTQRTSILCRILGFSAVPLHGDLTQAQRLGSLNKFKSGTANILI 365

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V N+D+P  ++ Y+HR+GRT RAGR GK+ +LV + D++    I
Sbjct: 366 ATDVAARGLDIPSVDVVINYDIPTDSKAYVHRVGRTARAGRSGKSISLVTQYDLEMYLRI 425

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           E+ I+KK+        ++   L       +  A +      + T   RR K+   ++ H
Sbjct: 426 EQSIQKKLPKDPSPPKAMLDALHVHVDRAYAEAIRQTKEFHEKTRRGRRGKDDKDREEH 484


>gi|149639330|ref|XP_001510706.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46,
           partial [Ornithorhynchus anatinus]
          Length = 974

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 142/448 (31%), Positives = 232/448 (51%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 316 SWVQCGISMKILNSLRKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 375

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 376 HIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKALGLRVVCVYGGTGISEQIAEL 435

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 436 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 495

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S     +E        +   K   L 
Sbjct: 496 DRQTVMFSATFPRAMEALARRILNKPVEVQVGGRSVVCSDVEQQV--IVIEEENKFLKLL 553

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT 
Sbjct: 554 ELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKSGTC 613

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G AFT + ++  ++
Sbjct: 614 KLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGHAFTFITEDQARY 673

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     +  DL  L    +       +  +      +KS+GF  +   +   
Sbjct: 674 AGDIIKALELSGTAVPADLEKLWSDFK-------DQQKAEGKTIKKSSGFSGKGFKFDET 726

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +   E +K+ K    +Q++D +   
Sbjct: 727 EQAL-ANERKKLQKAALGLQDSDDEDTA 753


>gi|296157319|ref|ZP_06840155.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295892655|gb|EFG72437.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 520

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 174/456 (38%), Positives = 251/456 (55%), Gaps = 12/456 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS ++V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSEQLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGR-----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L         +  R  R LIL PTRELAAQV ++   YGK   L   ++ GG+    Q
Sbjct: 61  QRLNSSPAVANGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G D+++ TPGR+LDH  +  + ++++EILV+DEADRMLDMGFI  I+ + + +P
Sbjct: 121 IGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT +DE++ +++N L +P  IEV   ++TAE++            ++    
Sbjct: 181 PKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAESVAQKIHPVDRDKKRELLTH 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 Q      ++F   K     L   L K G +  AIHGN  Q +R + L+ FK+GT
Sbjct: 241 L---IKQHNWFQVLVFTRTKHGANRLAEQLTKDGINSLAIHGNKSQSARTRALAEFKDGT 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARG+DI  + HV N+D+PN  E+Y+HRIGRTGRAG  G+A +LV  ++++
Sbjct: 298 LQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQ 357

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            +  IEKLI++ V  + + G         E I              P++  G  +R    
Sbjct: 358 LLKDIEKLIKRPVPQEVVAGFEPDPTAKPEPILRRGQGGGGGGGRSPRQGQGAPKRDDAR 417

Query: 414 S-SQKSHIPLKES-EKISKLQQDIQENDADSLGFRG 447
                S  P + S ++ +  QQ  +   A   G  G
Sbjct: 418 RGGAGSAKPAQRSGQRPANGQQQPKPQGAKPAGNDG 453


>gi|167580312|ref|ZP_02373186.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
 gi|167618435|ref|ZP_02387066.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
 gi|257139776|ref|ZP_05588038.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
          Length = 481

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 173/469 (36%), Positives = 250/469 (53%), Gaps = 17/469 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+ +++ A+ + GY  PTPIQ   IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   ++ A T+            +   +  
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                  ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 ---IRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKK--VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +  IEKLI++   ++ L  DL             +    R+     ++S G +R      
Sbjct: 369 LADIEKLIKRTLSLETLELDLPRHRHDERGGRRERERDERRGASAGRRSAGGERAHHPRR 428

Query: 415 SQ-------KSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPK 456
                    K ++P   + +  + +    E  A        +  F +P+
Sbjct: 429 EAPIDDFFLKPYVPSSSANQPEEAKPAQPEKKAPKQPLAALLGGFGMPR 477


>gi|89072528|ref|ZP_01159100.1| putative ATP-dependent RNA helicase SrmB [Photobacterium sp. SKA34]
 gi|89051632|gb|EAR57085.1| putative ATP-dependent RNA helicase SrmB [Photobacterium sp. SKA34]
          Length = 412

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 130/371 (35%), Positives = 205/371 (55%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF++L L  +++ A+ + GY +PT +Q + IP  L   DV   A TGTGKTA+F+LPM+ 
Sbjct: 3   DFSELELDSELLRAIEEIGYSRPTVVQAQAIPHALDGKDVMASAPTGTGKTAAFLLPMIQ 62

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    +   P  + IL PTRELA QVAD      K   L V  + GGI ++   + L 
Sbjct: 63  HLQDFPRKRPGPARILILTPTRELAIQVADQARALAKYTTLKVFTITGGISYDEHAEMLG 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR++++    K     +E L++DEADRMLDMGF   ++ +     + RQ+
Sbjct: 123 KTQDIVVATPGRLMEYIEAEKFDCRAVECLILDEADRMLDMGFGKIVERLNHECRWRRQS 182

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     +++ SE  L  P  +  +      + I   ++       K         
Sbjct: 183 LLFSATLEGKGVREFSETILNEPVEVNADPSRRERKKIHQMYLRCDNMDHKLA---LLEN 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  +  IIF   ++ +  L   LE  G     I G + Q +R  +++ F++G + ++
Sbjct: 240 IIKEQAERTIIFVKTRERLGILRGQLEAMGIPCNWIQGEMAQAARTNMITRFRDGVVNVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV NFD+P  AE Y+HRIGRT RAG+ G A +LV   D   I+ 
Sbjct: 300 IATDVAARGIDLPDVSHVINFDLPRTAEVYVHRIGRTARAGKKGTAISLVEAHDQNMIER 359

Query: 360 IEKLIEKKVDW 370
           I + ++++V  
Sbjct: 360 ISRYMKEEVQE 370


>gi|269469155|gb|EEZ80700.1| ATP-dependent RNA helicase RhlE [uncultured SUP05 cluster
           bacterium]
          Length = 434

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 157/372 (42%), Positives = 236/372 (63%), Gaps = 4/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ AV   GY KP+PIQ K+IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MGFSKLGLSDSILKAVKQQGYDKPSPIQEKSIPIVLDGKDLMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG+       RTLIL PTRELAAQV D+   YGK+  L   ++ GG+    Q KKL
Sbjct: 61  QLLSKGKPTNSNQVRTLILTPTRELAAQVQDSVATYGKHLPLKSTVVFGGVKINPQMKKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD +++  +  + +EI+V DEADRMLDMGFI  I+ I  ++P  RQ
Sbjct: 121 RGGVDILVATPGRLLDLYSQNAVKFDQLEIIVFDEADRMLDMGFIHDIKRILKVLPPKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT +DE++K++++ + NP  +     ++T ++++           +         
Sbjct: 181 TLMFSATFSDEIRKLAKSLVHNPVEVSTTPRNTTVKSVKQWIHPVDKSKKQALLTKL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               +    ++F   K     +   L K+G +  AIHGN  Q +R + L++FK+G + ++
Sbjct: 238 IKDHSWYQVLVFSRTKHGANRIATQLGKRGITAAAIHGNKSQGARTRALADFKDGKVNVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI ++ HV NFD+P+  E+Y+HRIGRTGRAG  G+A +LV+ +++K +  
Sbjct: 298 VATDIAARGIDIIELPHVVNFDLPHVPEDYVHRIGRTGRAGSKGEAISLVSADEVKQLFD 357

Query: 360 IEKLIEKKVDWL 371
           IE+LI+ K+D +
Sbjct: 358 IERLIQNKLDRI 369


>gi|229181700|ref|ZP_04309023.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 172560W]
 gi|228601733|gb|EEK59231.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 172560W]
          Length = 481

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 143/409 (34%), Positives = 236/409 (57%), Gaps = 10/409 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++K+S  ++ +P  IE+     T + IEH     +     +   L + + +
Sbjct: 182 LFSATLPEDVEKLSRTYMNSPIHIEIKAAGITTDKIEH---TLFEVIEDEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           + I  ++    G  S      EK    +  HA+   PI +K    D  K
Sbjct: 359 EYIGFEIPKAIGP-SKEEVMKEKAAFEEKIHAK---PIIKKDKNADINK 403


>gi|226312984|ref|YP_002772878.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226095932|dbj|BAH44374.1| probable ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 529

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 142/382 (37%), Positives = 227/382 (59%), Gaps = 9/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L   ++ A+ D G+ +P+PIQ   IP VL   D+ G AQTGTGKTA+F +P++  
Sbjct: 4   FSDFPLHKSILQAIHDMGFEEPSPIQAACIPKVLDGGDLIGQAQTGTGKTAAFGIPLVEK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +          + ++L PTRELA QVA    +  K   +    + GG     Q + L +G
Sbjct: 64  ITP----ANRVQAIVLTPTRELAIQVAGELLRISKYNKVRTLPIYGGQSIGHQIRALRQG 119

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++DH  R  L ++++  LV+DEAD MLDMGFI  I+ I + +P  RQTLL
Sbjct: 120 VQIVVGTPGRVMDHLRRKTLKLDHVHTLVLDEADEMLDMGFIEDIETIINHMPDERQTLL 179

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+++++  +++ P+ I V+    TA  I       Y  + +        +   
Sbjct: 180 FSATMPPEIKRLATRYMKQPQTIAVSREEVTAPLI---EQVYYKVFDRNKVESLCRILDS 236

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           + ++ GIIFC  K+ V  L   L+ +G+    +HG++ Q  R K+++ F+EG+I+ ++A+
Sbjct: 237 EDVELGIIFCRTKRGVDELSEVLQSRGYLADGLHGDLSQAQRDKVMNAFREGSIEFLIAT 296

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+D+ +V HV N+D+P  +E+Y+HRIGRTGRAGR G A TLV   +++ +  I+K
Sbjct: 297 DVAARGIDVGNVSHVINYDIPQDSESYVHRIGRTGRAGRKGIAMTLVTPREVRQMMFIQK 356

Query: 363 LIEKKVDWLNGDLSSLNPPLEK 384
             + K   L+ ++ SL    E+
Sbjct: 357 --QTKAQVLSRNVPSLEEVAER 376


>gi|229072918|ref|ZP_04206114.1| ATP-dependent RNA helicase dbpA [Bacillus cereus F65185]
 gi|228710164|gb|EEL62142.1| ATP-dependent RNA helicase dbpA [Bacillus cereus F65185]
          Length = 481

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 143/409 (34%), Positives = 236/409 (57%), Gaps = 10/409 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++K+S  ++ +P  IE+     T + IEH     +     +   L + + +
Sbjct: 182 LFSATLPEDVEKLSRTYMNSPIHIEIKAAGITTDKIEH---TLFEVIEDEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           + I  ++    G  S      EK    +  HA+   PI +K    D  K
Sbjct: 359 EYIGFEIPKAIGP-SKEEVMKEKAAFEEKIHAK---PIIKKDKNADINK 403


>gi|332534743|ref|ZP_08410571.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035830|gb|EGI72314.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 408

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 132/391 (33%), Positives = 205/391 (52%), Gaps = 9/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F++  L  K++ A+   GY  PT IQ + IP  LQ  D+   A TGTGKTA+F++P +
Sbjct: 1   MQFSEFDLDNKLLDAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R      R L++ PTRELA Q+ +  E   K  +L + ++ GGI +    +  
Sbjct: 61  QYLLDFPRRDPGFARVLVMTPTRELAYQIHEQCELLAKRTHLKIGVVTGGINYGTHKEIF 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+  D+LI TPGR++++         ++E+L+IDEADRMLDMGF   +  I       RQ
Sbjct: 121 EKNNDILIATPGRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEAKNRRQ 180

Query: 180 TLLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             LFSAT   D +++ +E  L +P  +E  +       I          + K    L   
Sbjct: 181 CFLFSATLEGDSVERFAEKTLNDPALLEAESSRKEKAKIHQWVHLADDYHHKLE--LLVN 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +   +   I+F   ++ +  L   L   G     + G + Q  RMK + NF  G  ++
Sbjct: 239 TLNGPDVTKAIVFVKTRERLETLIGELTNNGVKAAWLRGEMPQDKRMKAMENFHSGKTRI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+ D+ HV NFD+P  A+ Y+HRIGRTGRAG+ G A +LV   DI  + 
Sbjct: 299 LIATDVAARGIDVSDISHVINFDMPRTADVYVHRIGRTGRAGKKGIAISLVEAHDIGILY 358

Query: 359 AIEKLIEKK-----VDWLNGDLSSLNPPLEK 384
            +E+ +E+K     +  +        PP +K
Sbjct: 359 KVERYVEQKLKRRVIKGVEPQHKEAKPPAKK 389


>gi|159904844|ref|YP_001548506.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           maripaludis C6]
 gi|159886337|gb|ABX01274.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
           C6]
          Length = 546

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 139/387 (35%), Positives = 224/387 (57%), Gaps = 9/387 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
            F +LGLS +++ A+   G+  PTPIQ + IP++++   DV G AQTGTGKTA+F +P+L
Sbjct: 3   SFKNLGLSDEIIKALEKKGFTNPTPIQEQAIPILIEGKRDVVGQAQTGTGKTAAFGIPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++G    +    LIL PTRELA QVA+  +    +  L +  + GG   + Q ++L+
Sbjct: 63  ETIDEGSRNTQA---LILAPTRELAIQVAEEIDSIKGSKRLNIFPVYGGQSIDRQIRELK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGRILDH +R  + + N+  +V+DEAD ML+MGFI  ++ I   V   ++ 
Sbjct: 120 RGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTEKRM 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ D + K+++N+++    I+V     T         + Y  +S+    L   + 
Sbjct: 180 LLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLT---DQSYYEIHSRDKFELLSRII 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +    G+IFC  K +V  +   L ++G++   +HG++ Q  R K L  FK   I ++V
Sbjct: 237 DVEKEFYGLIFCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLEKFKARKINVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV N+D+P   E+Y+HRIGRTGRAG+ G A T V   + +    I
Sbjct: 297 ATDVAARGIDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKFKYI 356

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKI 385
           +K+   ++  + +      +     KI
Sbjct: 357 QKIANTEIRKEEVPDVKDIIGAKKRKI 383


>gi|330009971|ref|ZP_08306668.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. MS 92-3]
 gi|328534645|gb|EGF61216.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. MS 92-3]
          Length = 509

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 157/374 (41%), Positives = 228/374 (60%), Gaps = 6/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ AV + GYV+PTPIQ + IP VLQ  D+   AQTGTGKTA F LP+L
Sbjct: 59  MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 118

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L +        R  R LIL PTRELAAQV +N   Y K  N+   ++ GG+    Q  
Sbjct: 119 QRLIQNEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMM 178

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 179 KLRGGVDILVATPGRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDIRRVLAKLPAR 238

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++E  L NP  +EV   ++ +E I            ++      
Sbjct: 239 RQNLLFSATFSDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQL- 297

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 298 --IGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIR 355

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 356 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 415

Query: 358 DAIEKLIEKKVDWL 371
             IE+L++K++  +
Sbjct: 416 RDIERLLKKEIPRI 429


>gi|262041112|ref|ZP_06014330.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041562|gb|EEW42615.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 519

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 157/374 (41%), Positives = 228/374 (60%), Gaps = 6/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ AV + GYV+PTPIQ + IP VLQ  D+   AQTGTGKTA F LP+L
Sbjct: 69  MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 128

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L +        R  R LIL PTRELAAQV +N   Y K  N+   ++ GG+    Q  
Sbjct: 129 QRLIQNEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMM 188

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 189 KLRGGVDILVATPGRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDIRRVLAKLPAR 248

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++E  L NP  +EV   ++ +E I            ++      
Sbjct: 249 RQNLLFSATFSDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQL- 307

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 308 --IGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIR 365

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 366 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 425

Query: 358 DAIEKLIEKKVDWL 371
             IE+L++K++  +
Sbjct: 426 RDIERLLKKEIPRI 439


>gi|229112867|ref|ZP_04242398.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock1-15]
 gi|296505875|ref|YP_003667575.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|228670546|gb|EEL25859.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock1-15]
 gi|296326927|gb|ADH09855.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
          Length = 481

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 143/409 (34%), Positives = 236/409 (57%), Gaps = 10/409 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++K+S  ++ +P  IE+     T + IEH     +     +   L + + +
Sbjct: 182 LFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEH---TLFEVIEDEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           + I  ++    G  S      EK    +  HA+   PI +K    D  K
Sbjct: 359 EYIGFEIPKAIGP-SKEEVMKEKAAFEEKIHAK---PIIKKDKNADINK 403


>gi|229148341|ref|ZP_04276624.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST24]
 gi|228635135|gb|EEK91682.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST24]
          Length = 481

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 143/409 (34%), Positives = 236/409 (57%), Gaps = 10/409 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++K+S  ++ +P  IE+     T + IEH     +     +   L + + +
Sbjct: 182 LFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEH---TLFEVIEDEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           + I  ++    G  S      EK    +  HA+   PI +K    D  K
Sbjct: 359 EYIGFEIPKAIGP-SKEEVMKEKAAFEEKIHAK---PIIKKDKNADINK 403


>gi|218233461|ref|YP_002370229.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|229153612|ref|ZP_04281789.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1550]
 gi|218161418|gb|ACK61410.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228629841|gb|EEK86493.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1550]
          Length = 481

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 143/409 (34%), Positives = 236/409 (57%), Gaps = 10/409 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++K+S  ++ +P  IE+     T + IEH     +     +   L + + +
Sbjct: 182 LFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEH---TLFEVIEDEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           + I  ++    G  S      EK    +  HA+   PI +K    D  K
Sbjct: 359 EYIGFEIPKAIGP-SKEEVMKEKAAFEEKIHAK---PIIKKDKNADINK 403


>gi|170578019|ref|XP_001894230.1| eukaryotic initiation factor 4A [Brugia malayi]
 gi|158599270|gb|EDP36940.1| eukaryotic initiation factor 4A, putative [Brugia malayi]
          Length = 413

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 203/377 (53%), Gaps = 9/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++GL   ++  +   G+ KP+ IQ + I    ++ DV   AQ+GTGKTA+F + +L 
Sbjct: 45  NFDEMGLKENLLRGIYAFGFEKPSAIQQRAIIPCTKKRDVIAQAQSGTGKTATFSVAVLQ 104

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++    V+    L++ PTRELA Q+       G+   +     IGG       +KLE 
Sbjct: 105 NIDETIPEVQA---LVMAPTRELAQQIQKVMLSLGEYLGVKCHASIGGTNVRDDQRKLES 161

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  NNI++ V+DEAD ML  GF   I ++   +P   Q +
Sbjct: 162 GVHVVVGTPGRVNDMITRQSLQTNNIKMFVLDEADEMLSRGFKEQIYDVFKCMPSDVQVV 221

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+ +V+  F+ +P RI V     T E I           ++        L S
Sbjct: 222 LLSATMPSEVLEVTNRFMNDPIRILVKREELTLEGI------RQFYINEWKFETLCDLYS 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IFCN ++ V  L   + K+ ++V  +HG ++Q  R  I+  F+ G+ ++++ 
Sbjct: 276 TVNVTQAVIFCNTRRKVDYLAAQMSKEKYTVSCMHGEMEQNERDVIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   + + D++ +  IE
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFITETDMRMMKDIE 395

Query: 362 KLIEKKVDWLNGDLSSL 378
                +++ +  D+++L
Sbjct: 396 SFYNTQIEEMPMDIANL 412


>gi|152969387|ref|YP_001334496.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954236|gb|ABR76266.1| putative ATP-dependent RNA helicase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 451

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 157/374 (41%), Positives = 228/374 (60%), Gaps = 6/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ AV + GYV+PTPIQ + IP VLQ  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L +        R  R LIL PTRELAAQV +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QRLIQNEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDIRRVLAKLPAR 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++E  L NP  +EV   ++ +E I            ++      
Sbjct: 181 RQNLLFSATFSDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQL- 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 240 --IGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL 371
             IE+L++K++  +
Sbjct: 358 RDIERLLKKEIPRI 371


>gi|153000529|ref|YP_001366210.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151365147|gb|ABS08147.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 467

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 158/432 (36%), Positives = 240/432 (55%), Gaps = 6/432 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F+ LGLS  ++ A+ + GY +PTPIQ K IP++L+  ++   AQTGTGKTASFVLP+ 
Sbjct: 1   MPFSKLGLSNPILRAITELGYSQPTPIQEKAIPVILKGKNLLAGAQTGTGKTASFVLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +  + R +  R LIL PTRELA QV DN  KY K   LT   + GG+    Q + L
Sbjct: 61  QMFADMPKIRAKRVRALILTPTRELAVQVEDNIAKYAKYLPLTSMAMYGGVDAAPQKQSL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + I +LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDEISVLVLDEADRMLDMGFIEDINKIIERLPTERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++ +++  ++NP  IE+   S+ A  I+   +                 
Sbjct: 181 NLLFSATLSKQVRFLAKTAVENPVEIEIARDSANAPQIDQWLITVDKDKKSALLSKL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  +IF   K+    L   LEK+G +  AIH    Q  R ++L +FK G ++ +
Sbjct: 238 ITEQAWEQALIFIQTKQGAAKLVSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGKLRFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +A+RG+DI  +  V N+D+P+ A++YIHRIGRTGRAG  G+A + V+K+D +++ A
Sbjct: 298 VATGVASRGIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGACGEAISFVSKDDFRNLCA 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE+ +   +    + G + +   P+  +D    N   K            R  K  S + 
Sbjct: 358 IERRLGHIIVRKEIEGFVPNKEVPVSILDFVPKNTTPKTFKARAPEAKTSRPAKEGSFET 417

Query: 418 SHIPLKESEKIS 429
           +H     S K  
Sbjct: 418 AHAKKHRSAKSK 429


>gi|170725001|ref|YP_001759027.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169810348|gb|ACA84932.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 605

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 139/372 (37%), Positives = 219/372 (58%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ A+ + GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L 
Sbjct: 7   TFRELGLSEPLLRALDELGYEKPTPIQAASIDPLMANKDILGQAQTGTGKTGAFALPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++        P+ L+L PTRELA QVA+ F  Y K       L I  G   + Q   L 
Sbjct: 67  SIDPT---TNAPQILVLAPTRELAVQVAEAFASYSKFMKGMHVLPIYGGQSMQQQLNSLR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++DH  RG L +  ++ +V+DEAD ML MGFI  I+ I    P  RQ 
Sbjct: 124 RGPQIIVGTPGRVMDHMRRGTLKLATLKAMVLDEADEMLKMGFIDDIEWILEHTPQERQL 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +++++V+  +L NP  +++   ++T ETIE  FV        +  +    ++
Sbjct: 184 ALFSATMPEQIKRVANKYLDNPVHVKIAATTTTVETIEQRFVQVSQHNKLEALVRVLEVE 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +   IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++
Sbjct: 244 KTEGI---IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIII 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +GHV N+D+P   E Y+HRIGRTGRAGR G A   V   +++ +  I
Sbjct: 301 ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI 360

Query: 361 EKLIEKKVDWLN 372
           E+  + ++  ++
Sbjct: 361 ERATKSRISPMD 372


>gi|237807743|ref|YP_002892183.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237500004|gb|ACQ92597.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 438

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 134/384 (34%), Positives = 216/384 (56%), Gaps = 4/384 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L P ++ AV + G+ +PT IQ + IP+ ++  DV   A TGTGKTA+F+LP++
Sbjct: 1   MSFESLELDPVLLQAVEELGFKRPTTIQSQVIPVAMEGRDVMASAPTGTGKTAAFLLPIM 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +     R   P    IL PTRELA Q+ +  E      ++ VA +IGG+  E Q   L
Sbjct: 61  QHMIDFPRRRPGPARALILTPTRELALQITEQAEALAAYTHMKVASIIGGVAEEKQLPAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+  D++I TPGR++ +    +    +IEILV+DEADRMLDMGFI  +  I +   + +Q
Sbjct: 121 EKTVDIIIATPGRLMQYIEDERFDSRDIEILVLDEADRMLDMGFIGDVDRIAAEARWRKQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT+ +                E+      +E  +   +  +A  ++    L + L
Sbjct: 181 TMLFSATL-EGAGLKKFAEDLLKDPAELYAEPPRSERKKIQQLVYFADTAEHKFNLLKYL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+ +   IIF   ++ +  L   L+  G     + G ++Q  R++ L+ F+   ++++
Sbjct: 240 LQQEDVTRSIIFVKTRERLAELVSQLQANGIDCAWLRGEMEQEKRIEALNRFRSDRVKIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RG+D+PDV HVFN+D+P  A+ YIHRIGRTGRAG+ G A  L+   D+  ++ 
Sbjct: 300 VATDVASRGIDLPDVSHVFNYDMPRSADTYIHRIGRTGRAGKKGCAINLIEAHDVGMMER 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE 383
           +E+  E+K+  +   + S+ P  +
Sbjct: 360 VERYAEEKM--MRRVVDSMRPQHK 381


>gi|312881457|ref|ZP_07741251.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370879|gb|EFP98337.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 620

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 157/463 (33%), Positives = 248/463 (53%), Gaps = 35/463 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+   G+V PTPIQ  +IP +++  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNDAILSALDGMGFVSPTPIQAASIPHLMKGSDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             LE  + +   P+ ++L PTRELA QVA   +  G+N +    L I G      Q + L
Sbjct: 66  NKLELSQRK---PQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGTSIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D  NR +L ++ +   V+DEAD ML+MGF+  +  I    P + Q
Sbjct: 123 KSGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTAIMEHAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   L+ + E FL+NP  I+V   + T + +E  F         +        
Sbjct: 183 RVLFSATMPPMLKNIVERFLRNPITIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLET 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D     I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 243 EETD---ASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    ++ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRT 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE++ +  ++ +        P  +K+  A+                 ++      ++K H
Sbjct: 360 IERVTKSTMEEIQ------LPHRDKVAAAR----------------LEKLGAELETEKEH 397

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
             L++  ++ +  QD  E DA +L       A +L + +GK  
Sbjct: 398 KALEKFTELVEKLQDTLELDAATLA------AILLKRQQGKRP 434


>gi|212637255|ref|YP_002313780.1| DEAD box helicase [Shewanella piezotolerans WP3]
 gi|212558739|gb|ACJ31193.1| Helicase:DbpA, RNA-binding:DEAD/DEAH box helicase [Shewanella
           piezotolerans WP3]
          Length = 611

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 137/372 (36%), Positives = 218/372 (58%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL+  ++ A+ + GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L 
Sbjct: 7   TFRELGLAEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++        P+ L+L PTRELA QVA+ F  Y K       L I  G     Q   L 
Sbjct: 67  SIDPNTNS---PQILVLAPTRELAVQVAEAFGSYAKFMKGLHVLPIYGGQSMHQQLNALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++DH  RG L + +++ +V+DEAD ML MGFI  I+ I    P  RQ 
Sbjct: 124 RGPQIIVGTPGRVMDHMRRGTLKLESLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQL 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +++++V+  +L  P  +++   ++T ETIE  FV        +  +    ++
Sbjct: 184 ALFSATMPEQIKRVANKYLSEPVHVKIAATTTTVETIEQRFVQVSQHNKLEALVRVLEVE 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +   IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++
Sbjct: 244 KTEGI---IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIII 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +GHV N+D+P   E Y+HRIGRTGRAGR G A   V   +++ +  I
Sbjct: 301 ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI 360

Query: 361 EKLIEKKVDWLN 372
           E+  + ++  ++
Sbjct: 361 ERATKSRISPMD 372


>gi|332971571|gb|EGK10521.1| ATP-dependent RNA helicase [Kingella kingae ATCC 23330]
          Length = 481

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 143/386 (37%), Positives = 220/386 (56%), Gaps = 7/386 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F+DL L   ++ A+  AGY  PTPIQ++ IP  L   D+   AQTG+GKTA+F+LP +
Sbjct: 23  IKFSDLNLDKNILSALKSAGYDSPTPIQMQAIPAALDNRDIMASAQTGSGKTAAFLLPSL 82

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
             + ++     + PR L+L PTRELAAQV  N + Y +N        L+GG  F  Q K 
Sbjct: 83  QKLTQRSEKSGKSPRVLVLTPTRELAAQVEKNAQIYSQNMKWLRSVTLVGGSSFGQQIKA 142

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R  DV++ TPGR++DH   G++  + +E+LV+DEADRMLDMGFI  I+ I +  P  R
Sbjct: 143 LSRPIDVIVATPGRLMDHMRSGRIDFDRLEVLVLDEADRMLDMGFIDDIETIVAATPEDR 202

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    +NP+ IE+       +  E         +  +       
Sbjct: 203 QTLLFSATWDGAVGKLARKLTKNPEVIEIEREDKQGKIEEQLLYCDDKNHKNRL---LDH 259

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     L   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 260 ILRDANIDQCVIFTSTKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 319

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A +     +   + 
Sbjct: 320 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRSGIAISFAEVNEYMAVH 379

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
            IE+ I  K+  +   +  L P  ++
Sbjct: 380 KIERYINHKLPEV--VIEGLEPTRKR 403


>gi|321253117|ref|XP_003192635.1| hypothetical protein CGB_C1160C [Cryptococcus gattii WM276]
 gi|317459104|gb|ADV20848.1| hypothetical protein CNBC0850 [Cryptococcus gattii WM276]
          Length = 396

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L   ++  +    + KP+ IQ + I  +++  DV   AQ+GTGKTA+F + ML 
Sbjct: 24  TFEALNLKEDLLRGIYAYNFEKPSAIQQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++      +    L+L PTRELA Q+       G   N++    IGG       +KLE 
Sbjct: 84  SIDTNLRETQA---LVLSPTRELAVQIQTVVLALGDYMNVSCHACIGGTSVGEDIRKLEA 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++L++DE+D +L+ GF   I +I   +P   Q +
Sbjct: 141 GQQVVSGTPGRVFDMIRRRNLRTKDIKMLILDESDELLNKGFKDQIYDIYRYLPPATQVV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 201 VVSATLPHDVLEMTTKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDL--YD 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I++ F+ G  ++++ 
Sbjct: 259 TLTITQAVIFCNTRRKVDWLTEKMREANFTVSSMHGEMVQKERDAIMAEFRGGQSRVLIT 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENY+HRIGR+GR GR G A   V  +D++ +  IE
Sbjct: 319 TDVWARGIDVQQVSLVINYDLPTSRENYLHRIGRSGRFGRKGVAINFVTVDDVRILRDIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 379 QYYSTQIDEMPMNVAEL 395


>gi|58265474|ref|XP_569893.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108955|ref|XP_776592.1| hypothetical protein CNBC0850 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74686072|sp|Q5KJJ2|FAL1_CRYNE RecName: Full=ATP-dependent RNA helicase FAL1
 gi|50259272|gb|EAL21945.1| hypothetical protein CNBC0850 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226125|gb|AAW42586.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 396

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L   ++  +    + KP+ IQ + I  +++  DV   AQ+GTGKTA+F + ML 
Sbjct: 24  TFEALNLKEDLLRGIYAYNFEKPSAIQQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++      +    L+L PTRELA Q+       G   N++    IGG       +KLE 
Sbjct: 84  SIDTNLRETQA---LVLSPTRELAVQIQTVVLALGDYMNVSCHACIGGTSVGEDIRKLEA 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++L++DE+D +L+ GF   I +I   +P   Q +
Sbjct: 141 GQQVVSGTPGRVFDMIRRRNLRTKDIKMLILDESDELLNKGFKDQIYDIYRYLPPATQVV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 201 VVSATLPHDVLEMTTKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDL--YD 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I++ F+ G  ++++ 
Sbjct: 259 TLTITQAVIFCNTRRKVDWLTEKMREANFTVSSMHGEMVQKERDAIMAEFRGGQSRVLIT 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENY+HRIGR+GR GR G A   V  +D++ +  IE
Sbjct: 319 TDVWARGIDVQQVSLVINYDLPTSRENYLHRIGRSGRFGRKGVAINFVTVDDVRILRDIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 379 QYYSTQIDEMPMNVAEL 395


>gi|149757285|ref|XP_001503455.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 isoform 1
           [Equus caballus]
          Length = 483

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 160/471 (33%), Positives = 234/471 (49%), Gaps = 31/471 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  LSE---DPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 123 ADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI---QNITSLVPFTR 178
             V+I TPGR      +     +  I  LV+DEADR+L+ G   +    + I + VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSSTFSIKKIRFLVLDEADRLLEQGCTDFTVDLEAILAAVPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQ 237
           QTLLFSAT+TD L+++       P   E   P  T E ++  ++             L Q
Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQ 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             Q +    + IIF N  K    LC  L K GF   A+H  + Q+ R   L+ FK    +
Sbjct: 241 NFQDEHQDWSIIIFTNTCKTCQILCMMLRKFGFPAVALHSTMRQKERFAALAKFKSSIYR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI  +
Sbjct: 301 ILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLV 360

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK------ 411
            AIE+ I+KK++  +   + +   L      Q N  R+   I  ++  F  +K+      
Sbjct: 361 HAIEEQIKKKLEEFSVKEADVLQIL-----TQVNVVRRECEIKLEAANFGEKKEINKRKQ 415

Query: 412 ------------NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMP 450
                          ++ + I  K      K++Q +Q   A     RG  P
Sbjct: 416 LILEGKDPDLEAKRKAELAKIKQKNRRFKEKVEQALQRQKASRADHRGRPP 466


>gi|307255928|ref|ZP_07537729.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307260381|ref|ZP_07542088.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306861196|gb|EFM93189.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865632|gb|EFM97513.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 445

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 141/435 (32%), Positives = 228/435 (52%), Gaps = 11/435 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F +L L+P+++ A+   GY +PT +Q +TIP  L   D+ G A TGTGKTA+F+LP +
Sbjct: 8   MTFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAI 67

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QVA+  + + +   L++A + GG+ ++   +  
Sbjct: 68  QHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEVF 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR++ +          +EIL+ DEADRML MGF    + I +   + + 
Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT+  EL     + + +     ++   S  E  +      +A   +    L   L
Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLK-IDAEPSRRERKKIQQWYYHADNLEHKTKLLARL 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S   M+  I+F  ++++V  L  +L K+G     + G++ Q  R + ++  KEG + ++
Sbjct: 247 ISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKEGVVNVL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI DV +V NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D K +  
Sbjct: 307 VATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGK 366

Query: 360 IEKLIEK--KVDWLNGDLSSLNPPLE-------KIDIAQHNHARKNNPIPQKSTGFDRRK 410
           I++  E+  K   + G       P +       K + A+    ++      K+    R K
Sbjct: 367 IKRYTEELLKPRVIEGLEPRTKAPKDGELNTTTKKEKARIKKRKEAKKEAAKAKVKVRHK 426

Query: 411 KNYSSQKSHIPLKES 425
              +  K   P  E+
Sbjct: 427 DTKNIGKRRKPASEA 441


>gi|300722435|ref|YP_003711723.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628940|emb|CBJ89523.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Xenorhabdus nematophila ATCC 19061]
          Length = 498

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 163/415 (39%), Positives = 239/415 (57%), Gaps = 11/415 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LGL   ++ AV + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MNFESLGLKADILRAVEEQGYAEPTPIQQQAIPVVLSGKDLLASAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L +   +V   R  R LIL PTRELAAQV +N   Y K   L   ++ GG+    Q  
Sbjct: 61  QRLSESPTQVKGRRPVRALILTPTRELAAQVGENVHNYSKYLKLRSFVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++++EIL++DEADRMLDMGFI  I+ I + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVDLSHVEILILDEADRMLDMGFIHDIRRILNKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L +P  +EV   +S +E I     + +    K+   L  
Sbjct: 181 RQNLLFSATFSDEIKNLANKLLNDPVSVEVARRNSASEQI---AQSIHFVDKKRKGELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +      +  ++F   K     L   L K G +  AIHGN  Q +R + L++FK G I+
Sbjct: 238 YMIGSQNWQQVLVFTRTKHGANKLAELLNKDGVTAAAIHGNKSQGARTRALADFKSGQIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI  + HV N+++PN AE+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 ALVATDIAARGLDIDQLPHVVNYELPNVAEDYVHRIGRTGRADATGQAISLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             IE+L+++++  +       +P      I         N     S G + R+ N
Sbjct: 358 KDIERLLKREIPRIAIQGYEPDP-----SIKAEPIQNGRNDRGDGSRGSNSRENN 407


>gi|172061278|ref|YP_001808930.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171993795|gb|ACB64714.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 511

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 175/484 (36%), Positives = 249/484 (51%), Gaps = 33/484 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+  ++ A+ + GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 34  TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L    +    P        IL PTRELA QVA N   Y K+ +L  A++ GG+    Q 
Sbjct: 94  RLLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQM 153

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 154 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 213

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +                +  
Sbjct: 214 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKHGAVVQL 273

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                   +K  ++FCN K     L  +LE+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 274 L---RDRGLKQVLVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEI 330

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 331 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 390

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA---------------QHNHARKNNPIPQ 401
           +  IEKLI++ ++     L    P   + D                 +H  A        
Sbjct: 391 LADIEKLIKRPLEVQTLALD--KPSRHRHDERGGERGGERGGRRERDEHRGASARRSGSS 448

Query: 402 KSTGFDRRKKN------YSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLP 455
           +  G  RR +           +  +P  + E+    QQ   E           +  F +P
Sbjct: 449 ERGGHHRRHEAPVDDFFLKPYEPSVPATQPEETQSAQQ--HEKKGPKRQVAALLGGFGMP 506

Query: 456 KNRG 459
           +   
Sbjct: 507 RKPS 510


>gi|167855886|ref|ZP_02478636.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis 29755]
 gi|167852974|gb|EDS24238.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis 29755]
          Length = 441

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 134/381 (35%), Positives = 211/381 (55%), Gaps = 4/381 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F +L LSP+++ A+   GY +PT IQ +TIP  ++  DV G A TGTGKTA+F+LP +
Sbjct: 5   ITFEELDLSPELLQALEKKGYKRPTAIQQETIPPAMEGRDVLGSAPTGTGKTAAFLLPAL 64

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QVA+  E+  +  NL +A + GG+ ++   +  
Sbjct: 65  QHLLDHPRRKPGPPRILILTPTRELAMQVAEQAEELAQFTNLKIATITGGVAYQNHGEVF 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR+  +         ++EIL+ DEADRML MGF    + I +   + + 
Sbjct: 125 NTNQDLVVATPGRLQQYIQEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRWRKY 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT+  EL       + N     ++   S  E  +      +A   +    L   L
Sbjct: 185 TWLFSATLEGELLVDFAERILNDPVQ-IDAEPSRRERKKIQQWYYHADNLEHKTKLLARL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+  ++  I+F  ++++V  L  +L K+G     + G + Q  R + ++  K+G + ++
Sbjct: 244 ISEFEIERSIVFVRRRESVRELSETLRKRGIRSTYLEGEMAQTQRNQAIARLKDGVVNVL 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI DV  V NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D K +  
Sbjct: 304 VATDVAARGIDIDDVDFVINFDLPYSADTYLHRIGRTARAGKKGSAVSLVEAHDYKLLGK 363

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           I++  E+ +      +  L P
Sbjct: 364 IKRYTEEPLK--PRIIEGLAP 382


>gi|71906517|ref|YP_284104.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71846138|gb|AAZ45634.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 425

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 162/425 (38%), Positives = 243/425 (57%), Gaps = 12/425 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL  +++ AV D GY  PTPIQ + IP V+   D+   AQTGTGKTA F LP+L
Sbjct: 1   MHFSDLGLKAELLRAVADQGYDTPTPIQQQAIPAVMTGRDLMATAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRAR-----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L  G         + PR L+L PTRELA QV ++   YGK+  +T   + GG+    Q
Sbjct: 61  HRLCSGPNDRLTRVAKTPRVLVLTPTRELAIQVEESVRTYGKHLPITSLAVFGGVGINPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG D+L+ TPGR+LDH  +  + ++ IEI V+DEADRMLDMGFI  I+ I +L+P
Sbjct: 121 IANLRRGVDILVATPGRLLDHVQQRTVDLSKIEIFVLDEADRMLDMGFIRDIRKIIALLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ L+FSAT + ++++++   L NP  ++V   ++ AET+    + T     K+    
Sbjct: 181 KQRQNLMFSATFSPDIRELAAGLLHNPASVDVAARNTAAETVTQRVIETNRDQKKELLCH 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                        ++F   K     L  +LEK G    AIHG+  Q +R + L+ FKEG 
Sbjct: 241 L---FETRGWHQVLVFARTKHGADALSKTLEKAGIKSAAIHGDKSQGARTRALTEFKEGK 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +  +VA+D+AARG+DI  + +V N+++PN AE+Y+HRIGRTGRAG  G+A +LV+ ++  
Sbjct: 298 LVALVATDIAARGIDIDALPYVINYELPNVAEDYVHRIGRTGRAGMEGEAISLVSHDERG 357

Query: 356 HIDAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            +  IE+LI++ ++   + G   S   P + +   +   ARK  P    +    ++    
Sbjct: 358 SLRDIERLIKRDLERVVIPGFEPSAIAPPKPVQPPR--GARKPQPGRPSAQKTAQKPGGP 415

Query: 414 SSQKS 418
           +  +S
Sbjct: 416 AQHRS 420


>gi|325280173|ref|YP_004252715.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324311982|gb|ADY32535.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
           20712]
          Length = 417

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 138/422 (32%), Positives = 227/422 (53%), Gaps = 13/422 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F ++ L   V+  +    + + TP+Q +TIP++L+  D+ G AQTGTGKTA++ LP+L
Sbjct: 1   MRFDEVNLDENVLQGIEAMNFQEMTPVQEQTIPVILEGKDIIGCAQTGTGKTAAYTLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + L          R +I+ PTRELA Q+   FE +     ++  ++ GG      +++ +
Sbjct: 61  SRLVAEGNPDNHIRAVIMVPTRELAQQIDMQFEGFSYFLPISTTVVYGGGDGAGWDQQKK 120

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
               GADV+I TPGR+L H     + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLLMGADVVIATPGRLLSHIANSGIDLSQVSYFILDEADRMLDMGFFDDIMQIVKQMPTK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT+  ++++      +   +       + ++  E    + Y  Y  +   + Q
Sbjct: 181 RQTILFSATLPPKIRQ----LAKQILKDPAEINIAISKPNEAIIQSAYICYETQKMAIIQ 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L S+   K  IIF + K+ V +L +SL++   +V A+H +++Q  R  ++ +FK G   
Sbjct: 237 ELFSKPNRKKTIIFSSSKQKVKDLAYSLKRMKLNVAAMHSDLEQEQREAVMLDFKNGKTD 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+G V N+DVP+  E+YIHRIGRT RA   G A T V + +    
Sbjct: 297 ILVATDIVARGIDIDDIGLVINYDVPHDPEDYIHRIGRTARANADGVAITFVCEPEQGKF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE+ IEK +  +      L P +    +  +  A +  P  +       RK+ Y+ +K
Sbjct: 357 HKIEEFIEKDIYKIP-----LPPTVGPGPVY-NPQAFERRPRGKFKNNRPGRKRPYTRKK 410

Query: 418 SH 419
           + 
Sbjct: 411 NF 412


>gi|225684976|gb|EEH23260.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb03]
 gi|226294288|gb|EEH49708.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb18]
          Length = 399

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L 
Sbjct: 26  TFEDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++      +    L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 86  VIDTVLRETQA---LVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDH 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 143 GQHVVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 203 VVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDL--YD 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++++
Sbjct: 261 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIS 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 321 TDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 381 LYYSTQIDEMPMNVADL 397


>gi|110638956|ref|YP_679165.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110281637|gb|ABG59823.1| possible ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 446

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 163/417 (39%), Positives = 233/417 (55%), Gaps = 8/417 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   ++ A+ + GY  PTPIQ + IP VLQ  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MLFQDLKLIDPILKALSEEGYTTPTPIQSQAIPYVLQGKDLLGCAQTGTGKTAAFSIPIL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               ++K   R R  R+LI+ PTRELA Q+ ++ + YGK   LT  ++ GG+    Q   
Sbjct: 61  QLLSVKKSTDRKRPIRSLIVTPTRELAIQIGESLQAYGKYTGLTSTVIFGGVNQSRQVTA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G DVL+ TPGR+LD  N+G + + +IEI V+DEADRMLDMGF+  ++ +   +P  R
Sbjct: 121 LQNGIDVLVATPGRLLDLMNQGFISLRHIEIFVLDEADRMLDMGFVHDVRRLLLALPAKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+ K+++N L NP ++EV   SSTA+TI+               +    
Sbjct: 181 QSLFFSATMPPEIVKLADNILVNPSKVEVTPVSSTADTIKQFMYFVDRGNKNNLLVEVL- 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                 +K  ++F   K     +   L +      AIHGN  Q +R   L+NFK  T ++
Sbjct: 240 --QDPKIKTCLVFTRTKHVADKVVKMLAEHKIKAEAIHGNKSQNARQNALTNFKAQTTRI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ ++  V N+++PN  E Y+HRIGRTGRAG  G AF+    E+  ++ 
Sbjct: 298 LVATDIAARGIDVDNLEFVINYEIPNIPETYVHRIGRTGRAGAKGTAFSFCDAEEKAYLK 357

Query: 359 AIEKLIEKK---VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            IEKLI KK   +D     L   NPP       Q   +         +     R  N
Sbjct: 358 DIEKLISKKIPVIDEHPYPLMDHNPPKTPQGRQQRPASSSRPKAASGANSGSSRAGN 414


>gi|254480404|ref|ZP_05093651.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214038987|gb|EEB79647.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 429

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 163/389 (41%), Positives = 241/389 (61%), Gaps = 5/389 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGLS +++ AV   GY + TPIQ + IPLVL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MLFKDLGLSAELLRAVETQGYDEATPIQQQAIPLVLKGKDVLAGAQTGTGKTAGFTLPVL 60

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L+      + R PR L+L PTRELAAQV ++   YG+      A++ GG+    Q +K
Sbjct: 61  QRLQSSHAEGQKRHPRVLVLTPTRELAAQVHESVRDYGRFLPFRSAVIFGGVSINPQKQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DV++ TPGR+LDH  +  + ++ +E+LV+DEADRMLDMGFI  I+ + + +P  R
Sbjct: 121 LIKGVDVVVATPGRLLDHLQQRSIDLSKVEVLVLDEADRMLDMGFIRDIRKVLNAIPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT + E++ ++  FL  P  I+V   ++ AE +       Y    K+   L   
Sbjct: 181 QTLLFSATFSKEIKSLAAEFLHQPTEIQVTPQNTAAELV---SQIVYPVDKKRKRELLSQ 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  +  ++F   K     L   L K G +  AIHGN  Q +R K L+NFK+G++++
Sbjct: 238 KIGEENWQQVLVFTRTKHGANKLSEQLGKDGITSAAIHGNKSQGARTKALANFKQGSVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV NF++PN AE+Y+HRIGRT RAG+ G A +LV  +++K + 
Sbjct: 298 LVATDIAARGIDIDKLPHVVNFELPNVAEDYVHRIGRTARAGQEGHAVSLVCVDELKLLS 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
            IEKL+   ++ +N     ++P ++   I
Sbjct: 358 DIEKLLGTSIEKVNLPGYDVDPSIKAEPI 386


>gi|171057308|ref|YP_001789657.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170774753|gb|ACB32892.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 479

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 169/407 (41%), Positives = 241/407 (59%), Gaps = 8/407 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L PK++ A++DAGY+  TPIQ K IP+VL   DV G AQTGTGKTA+F LP+L  
Sbjct: 17  FDSLPLDPKLLRAIVDAGYLTMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAAFSLPLLQK 76

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + +       P        +L PTRELA QVA+N + Y ++  L V  + GGI    Q  
Sbjct: 77  MLRHENASASPARHPVRALVLAPTRELADQVANNVKTYARHSQLRVTCVFGGIDMAPQTA 136

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L+RG +VLI TPGR+LDH       +N +E +V+DEADRMLD+GF+P +Q I S +P T
Sbjct: 137 ELKRGVEVLIATPGRLLDHIQAKNCQLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKT 196

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K+++++LQ+P  +EV        T  +     Y+           
Sbjct: 197 RQTLLFSATFSPEIKKLAQSYLQDPLLVEVAR---PNATATNVEQRFYSVTDDDKRRTVL 253

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  + ++   I+F N K     L  S E+ G    A+HG+  Q  R+K L  FK G + 
Sbjct: 254 HILRERSITQAIVFVNSKLGAARLARSFERDGLRTSALHGDKSQDERLKALDAFKRGEVD 313

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI D+  VFNFD+P  AE+Y+HRIGRTGRAG  G A +LV+ +D + +
Sbjct: 314 VLVATDVAARGLDIADLPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSLVSHDDNRLV 373

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
             IE+LI+KK++    +L+   P          + A  + P P+ S 
Sbjct: 374 SDIEQLIKKKIEIEAIELNDERPRRPPRREIVDDVAVVDAPAPRYSR 420


>gi|158257264|dbj|BAF84605.1| unnamed protein product [Homo sapiens]
          Length = 483

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 158/472 (33%), Positives = 236/472 (50%), Gaps = 31/472 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PTRELA Q+A+ F   GK   L   +++ G+   AQ  +L R 
Sbjct: 64  LSE---DPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVDGMDMVAQALELSRK 120

Query: 123 ADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI---QNITSLVPFTR 178
             V+I TPGR      +     +  I  LV+DEADR+L+ G   +    + I + VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQ 237
           QTLLFSAT+TD L+++       P   E   P ST E ++  ++             L Q
Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQ 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             Q +    + IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK    +
Sbjct: 241 RFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI  +
Sbjct: 301 ILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLV 360

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK------ 411
            AIE+ I+KK++  + + + +   L      Q N  R+   I  ++  FD +K+      
Sbjct: 361 HAIEEQIKKKLEEFSVEEAEVLQIL-----TQVNVVRRECEIKLEAAHFDEKKEINKRKQ 415

Query: 412 ------------NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
                          ++ + I  K      K+++ ++   A   G +G  P 
Sbjct: 416 LILEGKDPDLEAKRKAELAKIKQKNRRFKEKVEETLKRQKAGRAGHKGRPPR 467


>gi|6468270|emb|CAB61567.1| ATP-dependent RNA helicase [Candida albicans]
          Length = 399

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P ++  +   G+  P+ IQ + I  ++   D    AQ+GTGKTA+F + ML 
Sbjct: 27  TFESMNLKPDLLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLE 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    + +  + LIL PTRELA Q+ +     G   N+     IGG       KKL++
Sbjct: 87  VIDT---KSKECQALILSPTRELAIQIQNVVMHLGDYMNIHTHACIGGKNVGEDVKKLQQ 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR++D   R  L   NI++L++DEAD +   GF   I  I   +P + Q +
Sbjct: 144 GQQIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYEIYKHLPPSVQVV 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  E+ +++  F  +P +I V     +   I+  +V    +  K   L       
Sbjct: 204 VVSATLPREVLEMTSKFTTDPVKILVKRDEISLSGIKQYYVQCEREDWKFDTLCDL--YD 261

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K  V  L   ++KQ F+V A+HG++ Q  R  I+++F+ G  +++++
Sbjct: 262 NLTITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFRRGNSRVLIS 321

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A  L+ K+D+  +  +E
Sbjct: 322 TDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVVTLKELE 381

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    K+  +  +++ +
Sbjct: 382 KYYSTKIKEMPMNINDI 398


>gi|83720702|ref|YP_441535.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
 gi|83654527|gb|ABC38590.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
          Length = 571

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 173/469 (36%), Positives = 250/469 (53%), Gaps = 17/469 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+ +++ A+ + GY  PTPIQ   IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 102 TFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 161

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q 
Sbjct: 162 RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 221

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 222 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 281

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   ++ A T+            +   +  
Sbjct: 282 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 341

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                  ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 342 ---IRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEI 398

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 399 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 458

Query: 357 IDAIEKLIEKK--VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +  IEKLI++   ++ L  DL             +    R+     ++S G +R      
Sbjct: 459 LADIEKLIKRTLSLETLELDLPRHRHDERGGRRERERDERRGASAGRRSAGGERAHHPRR 518

Query: 415 SQ-------KSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPK 456
                    K ++P   + +  + +    E  A        +  F +P+
Sbjct: 519 EAPIDDFFLKPYVPSSSANQPEEAKPAQPEKKAPKQPLAALLGGFGMPR 567


>gi|120599060|ref|YP_963634.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|146292869|ref|YP_001183293.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|120559153|gb|ABM25080.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145564559|gb|ABP75494.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 467

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 157/432 (36%), Positives = 236/432 (54%), Gaps = 6/432 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F+ LGLS  +V A+ + GY  PTPIQ K IP++L   +V G AQTGTGKTASFVLP +
Sbjct: 1   MPFSKLGLSDPIVKAITELGYASPTPIQTKAIPVILSGKNVLGAAQTGTGKTASFVLPLL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +  + R +  R +IL PTRELA QV +N  +Y K   LT   + GG+    Q KKL
Sbjct: 61  QMFADAPKIRPKRVRAIILTPTRELAVQVEENIRQYAKYLPLTSMAMYGGVDAAPQKKKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + + +LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDELSVLVLDEADRMLDMGFIEDINKIIEKLPPQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++ +++  ++NP  IE+   ++TA  I+                     
Sbjct: 181 NLLFSATLSKQVRVLAKTAVENPIEIEIARNAATAPQIDQWLTTVDKDKKSALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      +IF   K+    L   LEK+     A H    Q  R ++L++FK G +  +
Sbjct: 238 IKEQAWDQALIFIQTKQGAAKLVSQLEKRDIGAEAFHSGRSQAVREQLLADFKSGKLAFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +A+RG+DI  +  V N+D+P+ A++YIHRIGRTGRAG HG+A + V+K+D K++ A
Sbjct: 298 VATGVASRGIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGEHGEAISFVSKDDFKNLCA 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE+ +   +    + G       P+  +D    +   K     + + G  R  K  + + 
Sbjct: 358 IERRLGHLIVRKEVEGFAPKKEVPISILDFVPKHKPEKTFRPTESAAGTYRSAKEGTFET 417

Query: 418 SHIPLKESEKIS 429
           +      S K  
Sbjct: 418 AKAKKHRSAKSQ 429


>gi|188533127|ref|YP_001906924.1| ATP-dependent RNA helicase SrmB [Erwinia tasmaniensis Et1/99]
 gi|188028169|emb|CAO96027.1| ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99]
          Length = 442

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 139/430 (32%), Positives = 223/430 (51%), Gaps = 11/430 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ ++ + G+ +PT IQ + IP  L+  DV G A TGTGKTA+++LP + 
Sbjct: 5   TFSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K+ +L +A + GG+ F    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAFMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ T GR+L +          +E L++DEADRMLDMGF   I+ I++   + +QT
Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  E  K     + N     +    +  E  +       A   K    L   L 
Sbjct: 185 LLFSATLEGEAIKDFAERILNEPVE-IEADPARRERKKIQQWYYRADDIKHKTALLLHLL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   ++F  +++ V  +C  L + G +   + G + Q  R + +    +G + ++V
Sbjct: 244 KQPEVTRAVVFVRKRERVHEVCGWLREAGINTSYLEGELVQAKRNEAIKRVVDGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HVFNFD+P  ++ Y+HRIGRTGRAG+ G A +LV   D   +  I
Sbjct: 304 ATDIAARGIDIDDVSHVFNFDMPVTSDTYLHRIGRTGRAGKKGIAISLVEAHDNLLLGKI 363

Query: 361 EKLIEKKVDWLNGDL--SSLNPPLEKID-------IAQHNHARKNNPIPQKSTGFDRRKK 411
            + +++ +     D    +  PP EK+        +A+    +      +K    +R + 
Sbjct: 364 IRYVKEPIKARVIDELRPTTRPPSEKLKGKPSKKVLAKRVETKNKQKAEEKPRVKERHRD 423

Query: 412 NYSSQKSHIP 421
           + +  K   P
Sbjct: 424 SKNIGKRRKP 433


>gi|119357064|ref|YP_911708.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354413|gb|ABL65284.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeobacteroides
           DSM 266]
          Length = 418

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 162/421 (38%), Positives = 241/421 (57%), Gaps = 5/421 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L +   ++ A+ + GY  PTPIQ + IP+VLQ  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MQFESLNIIEPILLALREEGYSTPTPIQAEAIPIVLQGIDLLGCAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            IL + +   + R  R+LI+ PTRELA Q+ ++F+ YG++  LT  ++ GG+    Q   
Sbjct: 61  QILSENKLVDKSRKIRSLIVTPTRELAIQIGESFKAYGRHTGLTNTVIFGGVNQNPQTAS 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+LD  N+G L + ++EILV+DEADRMLDMGFI  ++ I + +P  +
Sbjct: 121 LLRGVDILVATPGRLLDLMNQGHLHLRDVEILVLDEADRMLDMGFIHDVKKILAHLPKKK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+ K++   L NP ++ V   SST E I                 L   
Sbjct: 181 QSLFFSATMPPEIVKLAATILHNPSKVSVTPVSSTVEIINQAIYFVDKGNK---NSLLLD 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L     +K  ++F   K     +   L K   +  AIHGN  Q +R + L+NFK  T ++
Sbjct: 238 LLKDKNIKTSLVFTRTKHGADKVVKYLLKHHITAEAIHGNKAQNARQRALNNFKAQTTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+ +V NF++PN  E Y+HRIGRTGRAG  G A +    E+ +++ 
Sbjct: 298 LVATDIAARGIDVDDLEYVINFEMPNIPETYVHRIGRTGRAGAKGTALSFCDAEEKEYLR 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEKLI KK+  +      L          Q    +  +P P+ S      + + + +K+
Sbjct: 358 DIEKLIAKKIPVIESHPFPLMDHNPVKTAKQQGRGQSGHPGPKPSGRTASSRWSVNPRKA 417

Query: 419 H 419
            
Sbjct: 418 R 418


>gi|210614158|ref|ZP_03290078.1| hypothetical protein CLONEX_02291 [Clostridium nexile DSM 1787]
 gi|210150802|gb|EEA81810.1| hypothetical protein CLONEX_02291 [Clostridium nexile DSM 1787]
          Length = 530

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 147/417 (35%), Positives = 233/417 (55%), Gaps = 17/417 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +LGL  ++  AV   G+ + +PIQ K IP++L+  D+ G AQTGTGKTA+F +P+L
Sbjct: 4   MNFENLGLCSEIQKAVKYMGFEEASPIQAKAIPVILEGKDIIGQAQTGTGKTAAFGIPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++    +++     +L PTRELA QVAD      K  +    L I  G     Q + L
Sbjct: 64  QKVDPKNKKLQGI---VLCPTRELAIQVADEIRNLAKYMHGIKVLPIYGGQEIVKQIRSL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  ++I TPGR++DH  R  + M+ +  +V+DEAD ML+MGF   I+ I S VP  RQ
Sbjct: 121 KSGTQIIIGTPGRVMDHMRRKTIKMDQVHTVVLDEADEMLNMGFREDIETILSGVPEERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + ++++ F +N + ++V     T   IE  +        K    +   L
Sbjct: 181 TVLFSATMPKAIMEITKKFQKNAQMVKVTKKELTVPNIEQFYYEVRP---KNKEEVLTRL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T K  +IFCN KK V  L  +L  +G+    +HG++ Q  R +++  F+ G   ++
Sbjct: 238 LDIYTPKLSVIFCNTKKQVDLLVTALLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTDIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V  VFN+D+P   E Y+HRIGRTGRAGR G++F+ V+ +++  +  
Sbjct: 298 VATDVAARGIDVDEVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKLKE 357

Query: 360 IEKLIEKKV---------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           I++  + K+         D  N  + ++   +++I I   +     N I  K  G D
Sbjct: 358 IQRYCKTKIYAQKVPSLDDVANTKMENILEDIDRI-IETEDLTAMVNAIESKVNGSD 413


>gi|91789374|ref|YP_550326.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
 gi|91698599|gb|ABE45428.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
          Length = 579

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 157/376 (41%), Positives = 232/376 (61%), Gaps = 8/376 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F +L L+P ++ AVL+ GY  PTPIQ + IP VL   D+ G AQTGTGKTA+F LPM 
Sbjct: 1   MTFEELKLAPAILKAVLEQGYDTPTPIQAQAIPAVLAGSDLLGGAQTGTGKTAAFTLPML 60

Query: 60  ----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                      R  V   R LI+ PTRELAAQV ++   YGK  +LT  ++ GG+   AQ
Sbjct: 61  QRLSTEPRLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYLDLTSMVMFGGVGMGAQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL RG D+L+ TPGR+LDH  +G L ++ ++ILV+DEADRMLDMGFI  I+ + +LVP
Sbjct: 121 IDKLRRGVDILVATPGRLLDHAGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLALVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE+++++   L++P  I+V   ++T + I            K     
Sbjct: 181 KHKQSLLFSATFSDEIRELANGLLRDPLHIQVTPRNTTVQRITQTIHPVGRSKKKAL--- 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              + ++      ++F   K    N+   L K G    A+HGN  Q +R + L  FK+GT
Sbjct: 238 LTHIINEHNWSQVLVFTRTKFGANNVAEHLTKNGIEAMALHGNKSQTARTQALQGFKDGT 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ +VA+D+AARG+DI ++ HV N+++PN +E+Y+HRIGRTGRAG  G+A +LV  ++  
Sbjct: 298 IRALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGEAVSLVCLDEEG 357

Query: 356 HIDAIEKLIEKKVDWL 371
            +  IE+  ++ ++ +
Sbjct: 358 FMQDIERFTKQNIEKV 373


>gi|330508037|ref|YP_004384465.1| ATP-dependent RNA helicase [Methanosaeta concilii GP-6]
 gi|328928845|gb|AEB68647.1| ATP-dependent RNA helicase, putative [Methanosaeta concilii GP-6]
          Length = 427

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 156/427 (36%), Positives = 231/427 (54%), Gaps = 7/427 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   ++ A+   GY  PTPIQ+  IP +L+  D+ GIAQTGTGKTA+FVLP+L
Sbjct: 1   MSFGNLNIIDPLLRAIALEGYTTPTPIQMLAIPPLLEGKDLLGIAQTGTGKTAAFVLPIL 60

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +   R   R   PR L+L PTRELAAQ+  +F  YGK       ++ GG+    Q   
Sbjct: 61  QRMSAERRASRPGSPRVLVLAPTRELAAQIGQSFATYGKFLRFRQLVIFGGVRQGPQVNM 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+LD  N+G + +  +E  V+DE DRMLDMGFI  ++ I S +P   
Sbjct: 121 LSRGVDILVATPGRLLDLMNQGYIELKGVEFFVLDEIDRMLDMGFIRDVKRIVSALPEKH 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            +L FSAT+T E  +++++ L +P  ++ +  + T ++I+               L   L
Sbjct: 181 SSLFFSATLTRETGELAQSLLNDPVHVQASPSACTLDSIDQQVFFVDQNSKNSLLLDLLL 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +     K  ++F   K     +   L K      AIHGN  Q  R K +  F+ G I++
Sbjct: 241 KEDM---KRVLVFARTKHRADKVAQMLSKNRIQSDAIHGNKSQNQRTKTMERFRSGRIRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI D+ HV N+D+PN  E+Y+HRIGRTGRAG  G AF+  + E+   + 
Sbjct: 298 LVATDIAARGIDIDDITHVVNYDLPNEPESYVHRIGRTGRAGASGNAFSFCSAEERSFLK 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK-IDIAQHNHAR-KNNPIPQKSTGFDRRKKNYSSQ 416
            IE+L  +K++       S         D    + AR +   + Q+  G     K  +S 
Sbjct: 358 DIERLTREKIEEREHKYHSPRAKAATGADAKPLSPARSRVTRVQQRPVGGKVPGKQATSH 417

Query: 417 KSHIPLK 423
           +   P K
Sbjct: 418 RISHPAK 424


>gi|255559772|ref|XP_002520905.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223539871|gb|EEF41450.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 407

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 201/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++G+   ++  +   G+ KP+ IQ + +  +++  DV   AQ+GTGKT+   L    
Sbjct: 35  SFDEMGIKNDLLRGIYAYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTACQ 94

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     V+    LIL PTRELAAQ        G   N+     IGG       +KLE 
Sbjct: 95  LVDTSSREVQA---LILSPTRELAAQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEY 151

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DE+D ML  GF   I ++   +P   Q +
Sbjct: 152 GVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVV 211

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+ +E+ +++  F+ +P +I V     T E I+  FVA   +  K   L       
Sbjct: 212 LISATLPNEILEMTSKFMTDPIKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 269

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   +    F+V ++HG++ Q+ R  I+  F+ GT ++++ 
Sbjct: 270 TLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFQSGTTRVLIT 329

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +  +E
Sbjct: 330 TDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDME 389

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 390 QYYSTQIDEMPMNVADL 406


>gi|298484048|ref|ZP_07002217.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
 gi|298269829|gb|EFI11421.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
          Length = 420

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 142/429 (33%), Positives = 232/429 (54%), Gaps = 12/429 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ + IP++L+  D+  +AQTGTGKTA+F+LP+L
Sbjct: 1   MKFSELQLNANVLEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
             L +G+        +I+ PTRELA Q+    E +     ++   + GG     FE Q K
Sbjct: 61  NKLSEGKHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIAKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++   L +P  I++       +       A Y  Y  +   + +
Sbjct: 181 RQTIMFSATMPAKIQQLANTILNDPSEIKLAVSKPAEKI----IQAAYVCYENQKLGIIR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   +  +  I+F + K  V  +  +L+    +V  +H +++Q  R  ++  FK G I 
Sbjct: 237 SLFMDEVPERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V NFDVP+ +E+Y+HRIGRT RA   G A T + +++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFINEKEQSNF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            +IE  +EK++  +         P  K      +  +  N    K   F R K+N   +K
Sbjct: 357 KSIENFLEKEIYKIPIPEGLGEAPEYK----PRSFNKNRNGNFSKRKDF-RGKRNNGGKK 411

Query: 418 SHIPLKESE 426
           S+ P    +
Sbjct: 412 SNYPAPRQK 420


>gi|323493912|ref|ZP_08099029.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323311853|gb|EGA65000.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 419

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 152/409 (37%), Positives = 229/409 (55%), Gaps = 10/409 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL   ++  +   G+ +PT +Q + IP VL+  DV   AQTGTGKTA+F LP+L 
Sbjct: 4   QFAALGLGSTLLSTLESLGFKQPTEVQTQAIPHVLEGKDVLAGAQTGTGKTAAFGLPILQ 63

Query: 62  ILEKGRARVRMPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L     +  +    +      PTRELA QV DN  +Y     + V  + GG     Q +
Sbjct: 64  KLIDSDTKRDIQSNDVRALVLVPTRELAQQVFDNLTQYAAQTKIKVVAVYGGTSMNVQTR 123

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+LI TPGR++DH     + ++  E LV+DEADRMLDMGF+P I+ I       
Sbjct: 124 NLDQGCDILIATPGRLIDHMYCKNINLHKTEYLVLDEADRMLDMGFMPDIKRILQRCNDD 183

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL FSAT    ++ ++   L+ P  ++V+  +STAET+       Y    K+ A L  
Sbjct: 184 RQTLFFSATFDKRIKTIAYRMLEEPVEVQVSPSNSTAETV---KQMVYPVDKKRKAELLA 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L      +  ++F   K+    L   L+  G    +I+G+  Q +R K L +FK G ++
Sbjct: 241 YLIGSRNWQQVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGQVR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++A+D+AARGLDI  +  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++   +
Sbjct: 301 ALIATDVAARGLDIQQLEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAVSLMSRDEEYLL 360

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
            AIE+L++ K+  +WL G   SL   +E  D A     R ++    K+ 
Sbjct: 361 HAIERLLDTKLPQEWLQGFEPSLIEEIEP-DKAPRRKGRNSDKRKMKAK 408


>gi|193669397|ref|XP_001951491.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Acyrthosiphon
           pisum]
          Length = 401

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 201/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L   +V  +   G+ +P+ IQ + I  +++  DV   AQ+GTGKTA+F + ML 
Sbjct: 29  TFDNMKLREDLVRGIYSYGFERPSAIQQRAIKPMIKGRDVIAQAQSGTGKTATFSIAMLQ 88

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++      ++     L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 89  SIDSQLRDTQVLC---LSPTRELAVQIQKVVLALGDYLNVQCHACIGGTNLGEDLRKLDF 145

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L   NI+ LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 146 GQHIVSGTPGRVFDMIRRKALRTRNIKTLVLDEADEMLNKGFKEQIYDVYRFLPPATQVI 205

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 206 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFC+ K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  ++++ 
Sbjct: 264 TLTITQAVIFCSTKRKVDWLTEKMRESNFTVSSMHGDMPQKERDAIMKEFRAGQTRVLIT 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 324 TDIWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIE 383

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 384 QYYSTQIDEMPMNVADL 400


>gi|253572829|ref|ZP_04850228.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298385203|ref|ZP_06994762.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
 gi|251837561|gb|EES65653.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298262347|gb|EFI05212.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
          Length = 374

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 155/372 (41%), Positives = 226/372 (60%), Gaps = 5/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L ++  ++ A+ + GY  PTPIQ K IP+ L + D+ G AQTGTGKTASF +P++
Sbjct: 1   MTFKELNITEPILKAIEEKGYTVPTPIQEKAIPVALAKKDILGCAQTGTGKTASFAIPII 60

Query: 61  TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L   KG  +    + LIL PTRELA Q+++  E Y K   +   ++ GG+    Q   
Sbjct: 61  QHLHLNKGEGKRSGIKALILTPTRELALQISECIEDYSKYTRIRHGVIFGGVNQRPQVDM 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD  N+G + ++NI+  V+DEADRMLDMGFI  I+ I   +P  +
Sbjct: 121 LHKGIDILVATPGRLLDLMNQGHIRLDNIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM D +  ++ + L+NP +I V   SST ++I       Y    K+ +LL   
Sbjct: 181 QTLFFSATMPDTIIALTNSLLKNPLKIYVTPKSSTVDSI---KQLVYFVEKKEKSLLLIS 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   ++ +IF   K N   +   L K G    AIHGN  Q +R   L NFK G  ++
Sbjct: 238 ILQKSEDRSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A T  ++E+ K I+
Sbjct: 298 MVATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGMALTFCSQEERKQIN 357

Query: 359 AIEKLIEKKVDW 370
            I+KL  KK++ 
Sbjct: 358 DIQKLTGKKLNR 369


>gi|148975750|ref|ZP_01812581.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3]
 gi|145964823|gb|EDK30075.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3]
          Length = 551

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 182/458 (39%), Positives = 268/458 (58%), Gaps = 19/458 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+   GY KP+PIQ K +P VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R    R L+L PTRELAAQV  +  KYG N  LT +++ GG+    Q +KL
Sbjct: 61  ELLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGLNLPLTSSVVFGGVKINPQMQKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G+DVL+ TPGR+LD +N+  +  + +EILV+DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 121 RKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +D+++ +++  + NP  I V+  +STA+T+     + Y    KK + +   L
Sbjct: 181 NLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAKTV---EQSIYPVDKKKKSPMLAKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  ++F   K     L   L++QG +   IHGN  Q +R K L NFK G ++++
Sbjct: 238 IKDNDWRQVLVFSKTKHGANKLARFLDEQGITAAPIHGNKSQGARTKALENFKTGKVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NFD+P+ +E+Y+HRIGRTGRAG  GKA +LV  +++  +  
Sbjct: 298 VATDIAARGIDIPQLPQVVNFDLPHVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFG 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDIA-------QHNHARKNNPIPQKSTGFDR 408
           IE+LI++ ++    +L   +P    P  ++D         +     + +   Q+S    R
Sbjct: 358 IERLIQQVLER--RELEGFSPVNKLPESRLDTRPIKPKKPKKAKQPREHSDGQRSGDNAR 415

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQ--ENDADSLG 444
             K     K H+P   S    K  Q  +  EN+  ++G
Sbjct: 416 GHKPAGKNKRHVPGTGSAPKRKPTQGRKPAENNPAAMG 453


>gi|325983359|ref|YP_004295761.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
           AL212]
 gi|325532878|gb|ADZ27599.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
          Length = 457

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 167/437 (38%), Positives = 257/437 (58%), Gaps = 23/437 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F  L L P ++ A+ +AGY  PTPIQ + +P ++  HDV   AQTGTGKTA+F+LP +
Sbjct: 1   MSFEKLNLHPSILKAIQEAGYTTPTPIQQQAVPELIAGHDVMASAQTGTGKTAAFMLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKK 118
            T+    + R R PR L+L PTRELA QV++  +KYGK       + I GG+P+  QNK 
Sbjct: 61  HTLATPAQIRSRGPRVLVLTPTRELALQVSEAAKKYGKYLPRINVVSILGGMPYPLQNKL 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+L+ TPGR++DH  RG++    +++LV+DEADRMLDMGFI  ++ I +  P TR
Sbjct: 121 LSQPVDILVATPGRLIDHIQRGRIDFKRLQMLVLDEADRMLDMGFIEDVETIAAATPATR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+ + + +V+   L+ P+RI+V++P S  + IE           K    L   
Sbjct: 181 QTLLFSATLDNAIDRVAAKLLKTPQRIQVSSPKSKLDNIEQRLHYADDMSHKNR--LLDH 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   +T+K  I+F   K++  +L  +L  QG++  A+HG+++QR R + L+  + G +++
Sbjct: 239 VLRDETLKQAIVFTATKRDADSLADTLYAQGYAAAALHGDMNQRERNRTLTRLRNGGLRV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+ HV NFD+P  AE+Y+HRIGRTGRAG  G A +  + +D  H+ 
Sbjct: 299 LVATDVAARGIDVADITHVINFDLPKFAEDYVHRIGRTGRAGAAGIAVSFASVKDSMHLT 358

Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLE----KIDIAQHNHARKNNPIPQKSTGFDRR--- 409
            IE+   +++    + G    + P       +         RK  P     +GFD R   
Sbjct: 359 KIERYTGQRIASHTIPGLEPRIKPRFHGNGPRGTAPNVTQKRKRAPF----SGFDSRPSF 414

Query: 410 ------KKNYSSQKSHI 420
                  +N + Q++  
Sbjct: 415 GAPGESDRNRNGQRTRT 431


>gi|157377161|ref|YP_001475761.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157319535|gb|ABV38633.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 610

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 138/372 (37%), Positives = 219/372 (58%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL+  ++ A+ + GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L 
Sbjct: 7   TFRELGLAEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++        P+ L+L PTRELA QVA+ F  Y K       L I  G     Q   L 
Sbjct: 67  SIDPN---TNAPQILVLAPTRELAVQVAEAFGSYAKFMKGLHVLPIYGGQSMHQQLNALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++DH  RG L + +++ +V+DEAD ML MGFI  I+ I    P  RQ 
Sbjct: 124 RGPQIIVGTPGRVMDHMRRGTLKLESLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQL 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +++++V+  +L  P  +++   ++T ETIE  FV        +  +    ++
Sbjct: 184 ALFSATMPEQIKRVANKYLSEPVHVKIAATTTTVETIEQRFVQVSQHNKLEALVRVLEVE 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +   IIF   + + V L   LE +G++   +HG+++Q++R + +   K GT+ +++
Sbjct: 244 KTEGI---IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGTLDIII 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +GHV N+D+P   E Y+HRIGRTGRAGR G A   V   +++ +  I
Sbjct: 301 ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI 360

Query: 361 EKLIEKKVDWLN 372
           E+  + ++  ++
Sbjct: 361 ERATKSRISPMD 372


>gi|306830918|ref|ZP_07464080.1| ATP-dependent RNA helicase DeaD [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426941|gb|EFM30051.1| ATP-dependent RNA helicase DeaD [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 526

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 152/373 (40%), Positives = 230/373 (61%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  V  AG+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELNLSENILATVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R  V+    L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L 
Sbjct: 61  DKIDTNRNLVQ---ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L ++++E L++DEAD ML+MGF+  I+ I S VP TRQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + ++++   F+QNP+ ++V     T + ++  ++    Q             
Sbjct: 178 LLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +G+    IHG++DQ  R+++L +FK   I ++V
Sbjct: 235 DVNQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+HG++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYLSII 354

Query: 361 EKLIEKKVDWLNG 373
           EKL +K++  L  
Sbjct: 355 EKLTKKRMKGLKP 367


>gi|197119659|ref|YP_002140086.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
 gi|197089019|gb|ACH40290.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
          Length = 471

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 150/390 (38%), Positives = 227/390 (58%), Gaps = 8/390 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF    L PKV   +   GYV PTPIQ++ IP V+   DV G+AQTGTGKTA+F LPML
Sbjct: 1   MDFKQFNLHPKVQAGIEAMGYVTPTPIQLQAIPSVISGQDVLGLAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +        R L+L PTRELA Q+ D     GK   L    + GG+    Q KKL+
Sbjct: 61  HRLVQE--ERGHVRGLVLAPTRELAEQINDALNGMGKQTRLRSVTVYGGVNINTQIKKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA++++  PGR+LDH ++G + ++ +EILV+DEAD+M DMGF+P ++ I   +P  RQ 
Sbjct: 119 EGAEIVVACPGRLLDHISQGTIDLSRVEILVLDEADQMFDMGFLPDVRKILRALPGKRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSATM D++++++   L+NP  ++V+  +  A      +       +     + +   
Sbjct: 179 LMFSATMPDDIRRLAHEILRNPVTVQVSRTAPAATVSHALYPVGQHLKTPLLFEMLK--- 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ +IF   K     +   LEK G+   ++ GN+ Q  R   L  F++GT Q+MV
Sbjct: 236 -HTDTESVLIFTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIMV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+D+P+  E Y HRIGRTGRA + G AFT+V  ED   + +I
Sbjct: 295 ATDIAARGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTSEDDYTVRSI 354

Query: 361 EKLIEKKVD--WLNGDLSSLNPPLEKIDIA 388
           EK++  K++   + G   ++  P +  + A
Sbjct: 355 EKVLGTKIERRRIEGFDYAVPAPQKDTEFA 384


>gi|260903903|ref|ZP_05912225.1| DEAD/DEAH box helicase domain-containing protein [Brevibacterium
           linens BL2]
          Length = 606

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 158/466 (33%), Positives = 245/466 (52%), Gaps = 46/466 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++LGL P V+ AV   GY  PTPIQ +TIP +++  DV G+AQTGTGKTA+F LP L+
Sbjct: 14  KFSELGLHPLVLQAVQAQGYETPTPIQAETIPALVEGRDVIGLAQTGTGKTAAFALPALS 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L +       P  L+L PTRELA QVA+ F  Y  N +    L I  G  +  Q   L+
Sbjct: 74  DLAEAGRANDGPFALVLTPTRELAIQVAEAFTSYATNLDDFSVLPIYGGQAYGPQLSGLK 133

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  +G L + ++  L++DEAD ML MGF   I+ I S    +RQ 
Sbjct: 134 RGAQVVVGTPGRVIDHLKKGSLKLGSLRHLILDEADEMLKMGFAEDIEEIFSQSGDSRQV 193

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   + +++  +L NPK + V + S T   I   +      +          ++
Sbjct: 194 ALFSATMPTSIHRLTGKYLNNPKEVRVASKSQTGSNIRQRYHMVQHSHKLDALTRILEVE 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +   I+F   K+    L   L  +GF   AI+G+I Q++R + +   + G + ++V
Sbjct: 254 EYEGI---IMFVRTKQATEELAEKLRARGFKASAINGDIPQQARERTIDMLRNGKVDILV 310

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V NFD+P+  E+Y+HRIGRTGRAGR G+A   V   + + + +I
Sbjct: 311 ATDVAARGLDVERITLVVNFDIPHDTESYVHRIGRTGRAGRSGEAILFVTPREQRLLGSI 370

Query: 361 EKLIEKKVDWLNG-------------------------DLSSLNPPLEKIDIAQHNHAR- 394
           E+  ++KV+ L                           +L+ L   +E+ +++++  A  
Sbjct: 371 ERATKQKVEQLKMPSVEELTNTRVEKFTKRIDDVLATTELTELATVIEQYELSRNVPATD 430

Query: 395 ---------------KNNPIPQKSTGFDRRKKNYSSQKSHIPLKES 425
                          K +P+P+ S G   R ++ S  +   P +E 
Sbjct: 431 IAAALASLVLESNTLKADPMPEPSRGKPGRDRD-SGGRDGKPGRER 475


>gi|317494807|ref|ZP_07953218.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917132|gb|EFV38480.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 429

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 139/421 (33%), Positives = 219/421 (52%), Gaps = 8/421 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  L P VV A+   G+   TPIQ   +PL +   DV G AQTGTGKT +F+     
Sbjct: 10  KFADFALHPTVVKALESKGFHNCTPIQALALPLTVNGRDVAGQAQTGTGKTLAFLASTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +   PR LI+ PTRELA Q+  + E       L + L  GG  ++ Q K
Sbjct: 70  YLLTHPVAENRKTNQPRALIMAPTRELAVQIHSDAEALAHETGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +G + +  I+++V+DEADRM D+GFI  I+ +   +P T
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQGHIDLGCIQVVVLDEADRMFDLGFIKDIRWLFRRMPAT 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F        +       +T        +   +++   L Q
Sbjct: 190 NQRLNMMFSATLSYRVRELAFEHMNNAEYIEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G + 
Sbjct: 249 TLIEEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGNLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + TL  +E + ++
Sbjct: 309 ILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGYSITLACEEYVLNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
            AIE  IE  +     +  +L    P  +++   + N+ ++ +  P+++ G  R+ +  +
Sbjct: 369 PAIEAYIEHSIPVSKYNSEALLTDLPAPKRLTRPRSNNGQRRSSGPRRNNGSMRQSRKRT 428

Query: 415 S 415
           S
Sbjct: 429 S 429


>gi|297581767|ref|ZP_06943689.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC385]
 gi|297534174|gb|EFH73013.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC385]
          Length = 438

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 141/432 (32%), Positives = 211/432 (48%), Gaps = 11/432 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD GL P+V+  +   G+V  TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                          PR +I+ PTRELA Q+ ++ E    +  L  AL  GG  ++ Q  
Sbjct: 70  HLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G D+LI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +  L    + T   +     F       E        +T        +   ++    L Q
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMNN-PEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L      V  + G++ Q+ R +IL  F +G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE  IE  +   + D    L+ L  PL      Q    R N    + S     RK   
Sbjct: 369 PAIESYIEHAIPTSDYDPSTLLTDLPAPLSLRSSPQQR--RTNTAGSRNSNNGGNRKPQQ 426

Query: 414 SSQKSHIPLKES 425
              ++  P KE+
Sbjct: 427 RRPRAPRPKKEA 438


>gi|15640333|ref|NP_229960.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121591056|ref|ZP_01678369.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 2740-80]
 gi|121729652|ref|ZP_01682129.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V52]
 gi|147674746|ref|YP_001218575.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O395]
 gi|153803135|ref|ZP_01957721.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-3]
 gi|153822829|ref|ZP_01975496.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33]
 gi|153827161|ref|ZP_01979828.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-2]
 gi|153831014|ref|ZP_01983681.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 623-39]
 gi|227080519|ref|YP_002809070.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae M66-2]
 gi|229506898|ref|ZP_04396406.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae BX 330286]
 gi|229509271|ref|ZP_04398754.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33]
 gi|229512687|ref|ZP_04402155.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TMA 21]
 gi|229516215|ref|ZP_04405663.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC9]
 gi|229520976|ref|ZP_04410397.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TM 11079-80]
 gi|229524737|ref|ZP_04414142.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae bv. albensis
           VL426]
 gi|229527200|ref|ZP_04416593.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 12129(1)]
 gi|229606411|ref|YP_002877059.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MJ-1236]
 gi|254227021|ref|ZP_04920581.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V51]
 gi|254851439|ref|ZP_05240789.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MO10]
 gi|255744103|ref|ZP_05418057.1| ATP-dependent RNA helicase RhlB [Vibrio cholera CIRS 101]
 gi|262161995|ref|ZP_06031012.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae INDRE 91/1]
 gi|262167974|ref|ZP_06035673.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC27]
 gi|262192566|ref|ZP_06050716.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae CT 5369-93]
 gi|298500937|ref|ZP_07010739.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MAK 757]
 gi|32363416|sp|Q9KV52|RHLB_VIBCH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040085|sp|A5F3R4|RHLB_VIBC3 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797692|sp|C3LQR1|RHLB_VIBCM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|9654717|gb|AAF93479.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547089|gb|EAX57224.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 2740-80]
 gi|121628586|gb|EAX61065.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V52]
 gi|124121326|gb|EAY40069.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-3]
 gi|125620457|gb|EAZ48831.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V51]
 gi|126519647|gb|EAZ76870.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33]
 gi|146316629|gb|ABQ21168.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O395]
 gi|148873506|gb|EDL71641.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 623-39]
 gi|149738958|gb|EDM53276.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-2]
 gi|227008407|gb|ACP04619.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae M66-2]
 gi|227012164|gb|ACP08374.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O395]
 gi|229335208|gb|EEO00692.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 12129(1)]
 gi|229338318|gb|EEO03335.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae bv. albensis
           VL426]
 gi|229341861|gb|EEO06862.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TM 11079-80]
 gi|229346641|gb|EEO11611.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC9]
 gi|229350197|gb|EEO15149.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TMA 21]
 gi|229353586|gb|EEO18523.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33]
 gi|229356003|gb|EEO20922.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae BX 330286]
 gi|229369066|gb|ACQ59489.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MJ-1236]
 gi|254847144|gb|EET25558.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MO10]
 gi|255738368|gb|EET93759.1| ATP-dependent RNA helicase RhlB [Vibrio cholera CIRS 101]
 gi|262023507|gb|EEY42209.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC27]
 gi|262028373|gb|EEY47029.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae INDRE 91/1]
 gi|262031611|gb|EEY50199.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae CT 5369-93]
 gi|297540441|gb|EFH76500.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MAK 757]
 gi|327483175|gb|AEA77582.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae LMA3894-4]
          Length = 438

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 141/432 (32%), Positives = 211/432 (48%), Gaps = 11/432 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD GL P+V+  +   G+V  TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                          PR +I+ PTRELA Q+ ++ E    +  L  AL  GG  ++ Q  
Sbjct: 70  HLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G D+LI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +  L    + T   +     F       E        +T        +   ++    L Q
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMNN-PEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L      V  + G++ Q+ R +IL  F +G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE  IE  +   + D    L+ L  PL      Q    R N    + S     RK   
Sbjct: 369 PAIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQR--RTNTAGSRNSNNGGNRKPQQ 426

Query: 414 SSQKSHIPLKES 425
              ++  P KE+
Sbjct: 427 RRPRAPRPKKEA 438


>gi|311745694|ref|ZP_07719479.1| putative ATP-dependent RNA helicase [Algoriphagus sp. PR1]
 gi|126575136|gb|EAZ79486.1| putative ATP-dependent RNA helicase [Algoriphagus sp. PR1]
          Length = 453

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 159/439 (36%), Positives = 241/439 (54%), Gaps = 8/439 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L+ +++ A+ +AGY  PT IQ K IPL L  HDV GIAQTGTGKTA++VLP+L  
Sbjct: 8   FEAFKLNRQLLEAIGEAGYAHPTAIQEKAIPLALAGHDVLGIAQTGTGKTAAYVLPILMK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    +    R LIL PTREL  Q+ +  ++     +L V  L GG+  + Q + ++ G
Sbjct: 68  VKYA--QGLHARALILAPTRELVMQIEEVTKQLATYTDLRVVSLYGGLGPKTQIETIQAG 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR LD + +  L    ++ +V+DEAD+M+DMGF+P I++I  ++P  RQ LL
Sbjct: 126 VDIIISTPGRFLDIYRKNMLYTKALKTMVLDEADKMMDMGFMPQIRSILEVIPVKRQNLL 185

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    ++K++  FL+ P+R+EV   ++TAETI+           K    L   L  +
Sbjct: 186 FSATFGTRIEKLAHEFLEFPERVEVTPQATTAETIDQVMYFVPNI--KTKINLLAKLLEE 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHS-LEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + +   IIF   +KN   + H    +    V  IH N  Q +R+  + +FK G ++++VA
Sbjct: 244 EAVNRAIIFTRSRKNAEEVFHFLENRHFGEVRVIHANKGQNTRINSMEDFKGGEVRILVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V HV NFD+P   E+Y+HRIGRTGRA   GKA + V   +  H + IE
Sbjct: 304 TDVASRGLDITMVSHVINFDIPLIYEDYVHRIGRTGRAEHEGKAISFVNPAEAYHFEKIE 363

Query: 362 KLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKSTGFDRRKKNYSSQKS 418
           ++I  KV    +   +   N P E+    +    R K    P     F  +K     +  
Sbjct: 364 EIIRMKVVEKPIPKGVDVTNTPFEEKQAYERELDRLKQRDNPDYKGAFHEKKAQPKKKNI 423

Query: 419 HIPLKESEKISKLQQDIQE 437
               K   K S  +++  +
Sbjct: 424 GKGEKARSKKSGNKKNRNQ 442


>gi|237713244|ref|ZP_04543725.1| ATP-dependent RNA helicase [Bacteroides sp. D1]
 gi|262406616|ref|ZP_06083165.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646166|ref|ZP_06723822.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC
           2a]
 gi|294807864|ref|ZP_06766646.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229446711|gb|EEO52502.1| ATP-dependent RNA helicase [Bacteroides sp. D1]
 gi|262355319|gb|EEZ04410.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638495|gb|EFF56857.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC
           2a]
 gi|294444926|gb|EFG13611.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 420

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 142/429 (33%), Positives = 231/429 (53%), Gaps = 12/429 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ + IP++L+  D+  +AQTGTGKTA+F+LP+L
Sbjct: 1   MKFSELQLNANVLEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
             L +G+        +I+ PTRELA Q+    E +     ++   + GG     FE Q K
Sbjct: 61  NKLSEGKHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIAKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++   L  P  I++       +       A Y  Y  +   + +
Sbjct: 181 RQTIMFSATMPAKIQQLANTILNEPSEIKLAVSKPAEKI----IQAAYVCYENQKLGIIR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   +  +  I+F + K  V  +  +L+    +V  +H +++Q  R  ++  FK G I 
Sbjct: 237 SLFMDEVPERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V NFDVP+ +E+Y+HRIGRT RA   G A T + +++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFINEKEQSNF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            +IE  +EK++  +         P  K      +  +  N    K   F R K+N   +K
Sbjct: 357 KSIENFLEKEIYKIPIPEGLGEAPEYK----PRSFNKNRNGNFSKRKDF-RGKRNNGGKK 411

Query: 418 SHIPLKESE 426
           S+ P    +
Sbjct: 412 SNYPAPRQK 420


>gi|115379574|ref|ZP_01466663.1| heliCase, c-terminal:dead/deah box helicase, n-terminal
           [Stigmatella aurantiaca DW4/3-1]
 gi|115363432|gb|EAU62578.1| heliCase, c-terminal:dead/deah box helicase, n-terminal
           [Stigmatella aurantiaca DW4/3-1]
          Length = 608

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 141/368 (38%), Positives = 195/368 (52%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL P +V A+   GY +PTPIQ   +P +L+  D+ GIA TGTGKTA+F LP+L 
Sbjct: 37  TFESLGLLPPLVEALSALGYEEPTPIQRAALPPLLEGKDLLGIAATGTGKTAAFSLPLLQ 96

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  G         L+L PTRELA QVA+   +YG+   ++V  L GG     Q + L+R
Sbjct: 97  RITPGAHAPFTASALVLVPTRELAMQVAEAIHRYGQKLGISVVPLYGGQVISQQLRVLKR 156

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR LDH  R  L +  + ++V+DEAD MLDMGF   ++ I S  P  RQT 
Sbjct: 157 GVDVVVATPGRALDHLQRKTLKLEQVRVVVLDEADEMLDMGFAEDLEAILSSTPEKRQTA 216

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +  ++E  L+ P R+ +      +  +       Y             +  
Sbjct: 217 LFSATLPPRIASIAERHLREPVRVRIAREKVESGELPRVRQTAYIVPRAFKVATLSRVLD 276

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I+FC  +  V  L  SL   G+   A                    +  L+VA
Sbjct: 277 VEAPTAAIVFCRTRTEVDELTLSLNGHGWRXXAXXXXXXXXXXXGXXXXRLSHSADLLVA 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  + HV NFDVPN  E Y+HRIGRTGRAGR G A TLV   + + +  IE
Sbjct: 337 TDVAARGLDISRLSHVVNFDVPNAPEAYVHRIGRTGRAGREGVAITLVEPREHRLLRNIE 396

Query: 362 KLIEKKVD 369
           KL  ++++
Sbjct: 397 KLTGQRIE 404


>gi|328470415|gb|EGF41326.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus 10329]
          Length = 643

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 157/463 (33%), Positives = 240/463 (51%), Gaps = 35/463 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+   G+V PTPIQ   IP +L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             L+  + +   P+ ++L PTRELA QVA   +  GKN      L I G      Q + L
Sbjct: 66  NKLDLDQRK---PQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA V++ TPGR+ D  NR +L ++ +   V+DEAD ML+MGF+  +  I    P + Q
Sbjct: 123 KNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   L+ + E FL++P  ++V   + T + ++  F         +        
Sbjct: 183 RVLFSATMPPMLKNIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLET 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D     I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 243 EETD---ASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE++ +  ++ +   L             Q   AR N    +             ++K H
Sbjct: 360 IERVTKSSMEEIQLPLRD-----------QVAEARLNKLAAE-----------LEAEKEH 397

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
             L +  ++ +  Q   E D   L       A +L + +GK  
Sbjct: 398 KALDKFAELVEKLQTSLEIDPAMLA------AMLLKRQQGKRP 434


>gi|283457475|ref|YP_003362053.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133468|dbj|BAI64233.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 732

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 148/392 (37%), Positives = 229/392 (58%), Gaps = 7/392 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL  +V+ A+ + GY KP+PIQ +TIPL+L+ HDV G+AQTGTGKTA+F LP L+ 
Sbjct: 63  FTDLGLDARVLAALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPALSR 122

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKK 118
           +          R  + L+L PTRELA QVA+ F  Y  +      L I  G P+  Q   
Sbjct: 123 MAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAG 182

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RGA V++ TPGR++DH  +G L ++N++ LV+DEAD ML MGF   ++ I    P ++
Sbjct: 183 LRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDSK 242

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q  LFSATM + ++K+++ +L +P+ + V   ++T+  I   ++     +          
Sbjct: 243 QVALFSATMPNSIRKIAQQYLNDPREVRVKAKTTTSSNISQRYMQVMHSHKLDAMTRVLE 302

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +++ D +   I+F   KK    +   L+ +GF+  AI+G+I Q+ R + +   ++G I +
Sbjct: 303 VENYDGI---IVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDI 359

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  +  V N+D+P+  E+Y+HRIGRTGRAGR G A   V   +   + 
Sbjct: 360 LVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYMLR 419

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
            IEK   +KV+ ++   +       K   AQ 
Sbjct: 420 QIEKATRQKVEPMHMPTAEAVNETRKQRFAQQ 451


>gi|228961717|ref|ZP_04123322.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228797966|gb|EEM44974.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 481

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 143/409 (34%), Positives = 235/409 (57%), Gaps = 10/409 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++K+S  ++ +P  IE+     T + IEH     +     +   L + + +
Sbjct: 182 LFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEH---TLFEVIEDEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G    +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFFYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           + I  ++    G  S      EK    +  HA+   PI +K    D  K
Sbjct: 359 EYIGFEISKAIGP-SKEEVMKEKAAFEEKIHAK---PIIKKDKNADINK 403


>gi|28900463|ref|NP_800118.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365616|ref|ZP_05778137.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus K5030]
 gi|260877415|ref|ZP_05889770.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AN-5034]
 gi|260898897|ref|ZP_05907338.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus Peru-466]
 gi|260901269|ref|ZP_05909664.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AQ4037]
 gi|28808843|dbj|BAC61951.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308089202|gb|EFO38897.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus Peru-466]
 gi|308090808|gb|EFO40503.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AN-5034]
 gi|308106808|gb|EFO44348.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AQ4037]
 gi|308111459|gb|EFO48999.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus K5030]
          Length = 643

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 157/463 (33%), Positives = 240/463 (51%), Gaps = 35/463 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+   G+V PTPIQ   IP +L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             L+  + +   P+ ++L PTRELA QVA   +  GKN      L I G      Q + L
Sbjct: 66  NKLDLDQRK---PQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA V++ TPGR+ D  NR +L ++ +   V+DEAD ML+MGF+  +  I    P + Q
Sbjct: 123 KNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   L+ + E FL++P  ++V   + T + ++  F         +        
Sbjct: 183 RVLFSATMPPMLKNIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLET 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D     I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 243 EETD---ASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE++ +  ++ +   L             Q   AR N    +             ++K H
Sbjct: 360 IERVTKSSMEEIQLPLRD-----------QVAEARLNKLAAE-----------LEAEKEH 397

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
             L +  ++ +  Q   E D   L       A +L + +GK  
Sbjct: 398 KALDKFAELVEKLQTSLEIDPAMLA------AMLLKRQQGKRP 434


>gi|170091668|ref|XP_001877056.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648549|gb|EDR12792.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 396

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 203/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   ++  +    + KP+ IQ + I  + Q  DV   AQ+GTGKTA+F + +L 
Sbjct: 24  TFDDLGLKEDLLRGIYAYNFEKPSAIQQRAILPITQGRDVIAQAQSGTGKTATFSISILQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KLE 
Sbjct: 84  SIDVT---VRETQALVLSPTRELATQIQSVVLALGDYMNVQCHACIGGTSIGEDIRKLEY 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 141 GQHVVSGTPGRVFDMIRRRSLRTRNIKMLVLDEADELLNKGFKDQIYDVYRYLPPATQVI 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  ++ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 201 LLSATLPYDVLEMTTKFMTDPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDL--YD 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   +    F+V ++HG + Q+ R  I++ F+ GT ++++ 
Sbjct: 259 TLTITQAVIFCNTRRKVDWLTEKMRASNFTVSSMHGEMVQKERDAIMAEFRGGTSRVLIT 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  IE
Sbjct: 319 TDVWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTVDDVRILRDIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  + + L
Sbjct: 379 QFYSTQIDEMPVNAAEL 395


>gi|91785132|ref|YP_560338.1| putative ATP-dependent RNA helicase 1 [Burkholderia xenovorans
           LB400]
 gi|91689086|gb|ABE32286.1| Putative ATP-dependent RNA helicase 1 [Burkholderia xenovorans
           LB400]
          Length = 543

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 176/459 (38%), Positives = 252/459 (54%), Gaps = 17/459 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 23  MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 82

Query: 61  TILEKGR-----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L         +  R  R LIL PTRELAAQV ++   YGK   L   ++ GG+    Q
Sbjct: 83  QRLNSSPAVANGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ 142

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G D+++ TPGR+LDH  +  + ++++EILV+DEADRMLDMGFI  I+ + + +P
Sbjct: 143 IGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP 202

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT +DE++ +++N L +P  IEV   ++TAET+            ++    
Sbjct: 203 PKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTH 262

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 Q      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK+GT
Sbjct: 263 L---IKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGT 319

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARG+DI  + HV N+D+PN  E+Y+HRIGRTGRAG  G+A +LV  ++++
Sbjct: 320 LQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQ 379

Query: 356 HIDAIEKLIEKKVDW-----LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            +  IEKLI++ V          D ++   P+  +   Q          P++  G  +R 
Sbjct: 380 LLKDIEKLIKRPVPQEVVAGFEPDPTAKPEPI--LRRGQGGGGGGGGRSPRQGQGAPKRD 437

Query: 411 KNYS-SQKSHIPLKES-EKISKLQQDIQENDADSLGFRG 447
                   S  P + S ++ +  QQ  +   A   G  G
Sbjct: 438 DARRDGAGSAKPAQRSGQRPANGQQQPKPQGAKPAGNGG 476


>gi|301753949|ref|XP_002912858.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like
           [Ailuropoda melanoleuca]
          Length = 477

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 159/446 (35%), Positives = 236/446 (52%), Gaps = 17/446 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  LSE---DPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 123 ADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI---QNITSLVPFTR 178
             V+I TPGR      +     +  I  LV+DEADR+L+ G   +    + I + VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQ 237
           QTLLFSAT+TD L+++       P   E   P  T E ++  ++             L Q
Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQ 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             Q +    + IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK    +
Sbjct: 241 NFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI  +
Sbjct: 301 ILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLV 360

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK-NYSSQ 416
            AIE+ I+KK++ L+ + + +   L      Q N  R+   I  ++  FD +K+ N   Q
Sbjct: 361 HAIEEQIKKKLEELSVEEAKVLQIL-----TQVNVVRRECEIKLEAANFDEKKEINKRKQ 415

Query: 417 ---KSHIPLKESEKISKLQQDIQEND 439
              +   P  E+++ ++L +  Q+N 
Sbjct: 416 LILEGKDPDLEAKRKAELAKIKQKNR 441


>gi|281343550|gb|EFB19134.1| hypothetical protein PANDA_000569 [Ailuropoda melanoleuca]
          Length = 457

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 159/446 (35%), Positives = 236/446 (52%), Gaps = 17/446 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  LSE---DPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 123 ADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI---QNITSLVPFTR 178
             V+I TPGR      +     +  I  LV+DEADR+L+ G   +    + I + VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQ 237
           QTLLFSAT+TD L+++       P   E   P  T E ++  ++             L Q
Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQ 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             Q +    + IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK    +
Sbjct: 241 NFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI  +
Sbjct: 301 ILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLV 360

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK-NYSSQ 416
            AIE+ I+KK++ L+ + + +   L      Q N  R+   I  ++  FD +K+ N   Q
Sbjct: 361 HAIEEQIKKKLEELSVEEAKVLQIL-----TQVNVVRRECEIKLEAANFDEKKEINKRKQ 415

Query: 417 ---KSHIPLKESEKISKLQQDIQEND 439
              +   P  E+++ ++L +  Q+N 
Sbjct: 416 LILEGKDPDLEAKRKAELAKIKQKNR 441


>gi|28901323|ref|NP_800978.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28809870|dbj|BAC62811.1| ATP-dependent RNA helicase, DEAD box family [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|328469261|gb|EGF40207.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus 10329]
          Length = 448

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 130/424 (30%), Positives = 201/424 (47%), Gaps = 8/424 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + KPT IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 5   LQFKDLGLDNRLLKNLKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 64

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR +IL PTRELA QV           +   AL++GG  F  Q K L
Sbjct: 65  HKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYDAALILGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH     L ++ +E L++DEADRMLD+GF P ++ I +     R+
Sbjct: 125 RRYPKFIVATPGRLADHLEHRSLYLDGLETLILDEADRMLDLGFAPELRRIHNAAKHRRR 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +              +    S  E  +         +      + + +
Sbjct: 185 QTLMFSATLDHAEVNDIASEMLNAPKRIAVGVSNEEHKDITQKFYLCDHLDHKEAILERV 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+   +  IIF   + +   L   L ++     A+ GN++Q  R  I+S F+    +++
Sbjct: 245 LSEAEYRQVIIFTATRDDTERLTAKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDI  V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D      
Sbjct: 305 VTTDVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKR 364

Query: 360 IEKLIEKKV-----DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           IE  +++ +     + L G    L PP  K D        K      K       K++ S
Sbjct: 365 IETYLQQDLAFSVFEDLKGKFKGLKPP--KKDFRNKKATTKKARPQAKKVAKQPAKRDKS 422

Query: 415 SQKS 418
             K+
Sbjct: 423 FYKN 426


>gi|284040525|ref|YP_003390455.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
 gi|283819818|gb|ADB41656.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
          Length = 475

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 151/450 (33%), Positives = 238/450 (52%), Gaps = 11/450 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L+ +++ AV + GY  PTPIQ KTIPL L  HDV GIAQTGTGKTA+++LP+L 
Sbjct: 5   SFEQFELNRQLLNAVAELGYTVPTPIQQKTIPLSLGNHDVLGIAQTGTGKTAAYLLPILM 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  + +   PR LIL PTREL  Q+     + GK  +L    L GG+  + Q + L  
Sbjct: 65  KVKYAQGK--NPRALILAPTRELVMQINQAVSELGKYTDLRHLALYGGLGPKTQIETLRN 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR +D +  G+++   I  +V+DEAD+M+DMGF+P I++I  ++P  RQ L
Sbjct: 123 GVDIIVATPGRFMDLYRSGEIVTKEIRTMVLDEADKMMDMGFMPQIRSILEIIPTKRQNL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLLQ 240
           LFSAT    ++++S  FL+ P ++EV   +STA+ +           +K          +
Sbjct: 183 LFSATFGGRVERLSSEFLEAPIKVEVTPQASTADMVSQVIYEAPNFRTKINMLDYLMRQE 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +           N+         +   +  IH N  Q +R+  +  FKEG IQ++V
Sbjct: 243 DFQRVIIFARTKGTADNIYKFLSRKVIEPEKIRVIHANKGQNTRINAMDAFKEGNIQVLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D+AARG+D+ +V HV NFD+P   E+Y+HRIGRTGRA R G+A T + K +  H+  I
Sbjct: 303 STDVAARGIDVAEVSHVINFDLPLIYEDYVHRIGRTGRANRTGEAITFLTKAEEYHVQKI 362

Query: 361 EKLIEKKVDWLN---GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           E++I+  +       G + +  P  E+  + +    ++    P     F  +K       
Sbjct: 363 ERIIKATIPRQPLPAGVVVAETPFEEEQAMLREIDEQRRKEDPTFLGAFHEKKIT----- 417

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRG 447
           +  P +E +K        ++      G R 
Sbjct: 418 NMAPGRERDKAQAKLSGAKKPSPSGPGTRS 447


>gi|302878537|ref|YP_003847101.1| DEAD/DEAH box helicase domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302581326|gb|ADL55337.1| DEAD/DEAH box helicase domain protein [Gallionella
           capsiferriformans ES-2]
          Length = 461

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 159/399 (39%), Positives = 240/399 (60%), Gaps = 10/399 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FADL L+P+++ A++++GY KPTPIQ + IPLVL+  D+   AQTGTGKTA+F LP+L 
Sbjct: 3   NFADLNLAPEILRALIESGYTKPTPIQAQAIPLVLEGSDLMAGAQTGTGKTAAFALPVLQ 62

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L    +    P        IL PTRELA QV  + + Y K  +L   ++ GG+  + Q 
Sbjct: 63  KLMPFASSSPSPARHAVRALILVPTRELAIQVEASVKAYAKYSHLRSLVVFGGVDIKTQT 122

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G ++L+ TPGR+LDH  +  + +N +++LV+DEADRMLDMGF+P ++ I +L+P 
Sbjct: 123 PHLRAGIEILVATPGRLLDHIEQKSVQLNQVQMLVLDEADRMLDMGFMPDLKRILALLPR 182

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ L+FSAT + E++K+S  FL NPK IEV   ++T+E +         +         
Sbjct: 183 QRQNLMFSATFSAEIKKLSAEFLVNPKLIEVARSNATSENVTQKVYLVGHEEKHALLAHL 242

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                       ++F   K     +   L+++GF+  AIHG+  Q  RM+ L  FK G I
Sbjct: 243 L---RGTGAVQTLVFTKTKLTASRIARQLQREGFASDAIHGDKSQLERMQALDAFKSGKI 299

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARGLDI  +  V N+++P+ AE+Y+HRIGRTGRAG  G A +LVA E+ K+
Sbjct: 300 TVLIATDVAARGLDIDQLPVVINYEIPSAAEDYVHRIGRTGRAGAFGVAISLVAPEEEKY 359

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           +  IEKLI+  +  +  +L +   PL +   A+  H  +
Sbjct: 360 LLEIEKLIKCTIQRV--ELPASEKPLARAPRAESAHEPR 396


>gi|167622911|ref|YP_001673205.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167352933|gb|ABZ75546.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 432

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 155/440 (35%), Positives = 238/440 (54%), Gaps = 16/440 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P+++ A+ + GY K TPIQ + IP V +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFAPEILRAISECGYEKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +    +          IL PTRELAAQ+ADN   Y K  ++ V  ++GG+  ++Q  K
Sbjct: 61  QKMLDNPSTTGRSNARALILTPTRELAAQIADNINDYAKYLDMKVVTVLGGVKMDSQATK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RGAD++I TPGR+L+H     L ++N++ LV+DEADRMLDMGF   IQ I   V   R
Sbjct: 121 LKRGADIIIATPGRLLEHIVACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  +++++   +  P  I  +  ++TA T+         +  ++       
Sbjct: 181 QNLLFSATFSTAVKQLANVMMVKPNIIAADKQNTTAVTVSQVVYPVEQRRKRELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   K  ++F   +     L   L   G     +HG   Q SR + L  FKEG +++
Sbjct: 239 -IGKKNWKQVLVFTATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREFKEGKMRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDI  + +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLA 357

Query: 359 AIEKLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            IEKLI +++  ++      G    L   L+K         R +N   Q        +KN
Sbjct: 358 DIEKLIGQQLRRISIPGYEVGSRDLLIKQLQKRRSFAKKQQRVDNAGAQVIA-----EKN 412

Query: 413 YSSQKSHIPLKESEKISKLQ 432
              ++  +      KI K++
Sbjct: 413 MQGRRVKVKNASPAKIKKIK 432


>gi|78067467|ref|YP_370236.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
 gi|77968212|gb|ABB09592.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
          Length = 484

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 156/373 (41%), Positives = 224/373 (60%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T     R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTFYADNRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + ++N++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAE++            ++     
Sbjct: 181 QRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKVD 369
           +  IE+LI++++ 
Sbjct: 358 LRDIERLIKREIP 370


>gi|30023480|ref|NP_835111.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|229130700|ref|ZP_04259653.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-Cer4]
 gi|29899041|gb|AAP12312.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|228652717|gb|EEL08602.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-Cer4]
          Length = 481

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 143/409 (34%), Positives = 236/409 (57%), Gaps = 10/409 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++K+S  ++ +P  IE+     T + IEH     +     +   L + + +
Sbjct: 182 LFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEH---TLFEVIEDEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           + I  ++    G  S      EK    +  HA+   PI +K    D  K
Sbjct: 359 EYIGFEIPKAIGP-SKEEVMKEKAAFEEKLHAK---PIIKKDKNADINK 403


>gi|298482320|ref|ZP_07000507.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
 gi|298271607|gb|EFI13181.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
          Length = 374

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 149/372 (40%), Positives = 226/372 (60%), Gaps = 5/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L ++  ++ A+ + GY  PTPIQ K IP  L + D+ G AQTGTGKTASF +P++
Sbjct: 1   MTFKELNITEPILKAIEEKGYTVPTPIQEKAIPPALAKRDILGCAQTGTGKTASFAIPII 60

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L+  +   R +  + LIL PTRELA Q+++  + Y K+  +   ++ GG+    Q   
Sbjct: 61  QHLQLDKEAARRQGIKALILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVDL 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD   +G + ++ I+  V+DEADRMLDMGFI  I+ I   +P  +
Sbjct: 121 LRKGIDILVATPGRLLDLMTQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM D +  ++++ L+NP +I +   SST ++I       Y    K+ + L   
Sbjct: 181 QTLFFSATMPDSIISLTKSLLKNPVKIYITPKSSTVDSI---KQVVYFVEKKEKSQLLIS 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S+   ++ +IF   K N   +   L K G    AIHGN  Q +R   L NFK G  ++
Sbjct: 238 ILSKAEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A T  ++E+ K ++
Sbjct: 298 MVATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNMGTALTFCSQEERKLVN 357

Query: 359 AIEKLIEKKVDW 370
            I+KL  KK++ 
Sbjct: 358 DIQKLTGKKLNK 369


>gi|253682634|ref|ZP_04863431.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873]
 gi|253562346|gb|EES91798.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873]
          Length = 476

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 141/429 (32%), Positives = 240/429 (55%), Gaps = 13/429 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +  LS +++  +   GY  PT +Q K IP+ L+  D+   +QTG+GKTASF +P+ 
Sbjct: 1   MNFKEFNLSNEILKTIKMLGYKSPTEVQEKVIPIALKDKDIIVKSQTGSGKTASFGIPVC 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +   P+ LIL PTRELA Q+ ++    G+   +    + G  P   Q  +L+
Sbjct: 61  EKVLLENKK---PQVLILTPTRELAVQIKEDISNIGRFKKIKCVAVYGKEPVSIQKNQLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR  DH  +G + +++I  L+IDEAD+ML+MGFI  ++++   +P  R T
Sbjct: 118 QRVHIVVGTPGRTFDHIEKGNMELSDIRYLIIDEADKMLNMGFIDQVEDVIKRLPKDRVT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ ++++K+   ++ NP++IE++  + T + I       Y   S +   L   + 
Sbjct: 178 MLFSATLEEKIEKLCVKYMNNPEKIEISKKNITTDII---EQEYYEVESDRKFSLLNKII 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +   + IIFCN K  V ++   ++ +GF   A+HG ++Q+ R++++  FK G    +V
Sbjct: 235 YTERPDSCIIFCNTKAEVGSIAIKMKNKGFDTKALHGGMEQKDRLEVIQEFKRGRFPFLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++ HV N++VP+  E+Y+HRIGRTGRAG  GK+ TLV++ + +   +I
Sbjct: 295 ATDVAARGIDIEEITHVINYEVPSEKESYVHRIGRTGRAGHKGKSITLVSEYENRRFKSI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+ I   V           P  E++   +     KN   P+        + N    K HI
Sbjct: 355 EEYIGYSVPKKEI------PSEEEVQEGRKLFREKNKVRPKLKKDKS-HEINKKITKIHI 407

Query: 421 PLKESEKIS 429
              + +KI 
Sbjct: 408 NAGKKKKIR 416


>gi|84393512|ref|ZP_00992267.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
 gi|84375865|gb|EAP92757.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
          Length = 423

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 151/425 (35%), Positives = 239/425 (56%), Gaps = 14/425 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLS +++  + +  +  PT +Q + IPLVL+  DV   AQTGTGKTA+F LP++ 
Sbjct: 7   SFNQLGLSEQLLTTLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLPIIQ 66

Query: 62  ILEKGRARVRMPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L + +  V     L+      PTRELA QV DN   Y K  ++ V +  GG+  + Q  
Sbjct: 67  RLIETKDNVIPNPKLVRALVLVPTRELAQQVFDNVTSYAKGTDIKVVVAYGGVSMKVQTD 126

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GAD+L+ TPGR++DH     ++++  E+LV+DEADRMLDMGF+P I+ I S +   
Sbjct: 127 NLRGGADILVATPGRLIDHMFTKNIMLSQTEVLVLDEADRMLDMGFMPDIKRILSRMNDV 186

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL FSAT  ++++ ++   +Q+P  I+V   +STA+T+             +      
Sbjct: 187 RQTLFFSATFDNKIKALAHRMMQSPSEIQVTPKNSTADTVTQMVYPVDKSRKSEL---LA 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L      +  ++F   K+    L   L+  G    +I+G+  Q +R K L +FK G ++
Sbjct: 244 YLIGSKNWQQVLVFTKTKQGTDALVKELKLDGIKAASINGDKSQGARQKALDDFKSGKVR 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++A+D+AARG+DI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L+++++   +
Sbjct: 304 ALIATDVAARGIDIQQLEQVVNYDMPFKAEDYVHRIGRTGRAGNTGLAISLMSQDEAYLL 363

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
             IE+L++ ++  +WL G      P LEK DIA     R  +   +K     + K + + 
Sbjct: 364 GDIERLLDTRLPQEWLEG----FEPSLEK-DIAPDRGGRSKSRSSEKRKIKAKLKIHQNR 418

Query: 416 QKSHI 420
            K+  
Sbjct: 419 GKARR 423


>gi|323491514|ref|ZP_08096694.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546]
 gi|323314239|gb|EGA67323.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546]
          Length = 643

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 156/463 (33%), Positives = 244/463 (52%), Gaps = 35/463 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+   G+V PTPIQ   IP +L   D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             L+  + +   P+ ++L PTRELA QVA   +  GKN      L I G      Q + L
Sbjct: 66  NKLDLAQRK---PQAIVLAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D  NR +L ++ +   V+DEAD ML+MGF+  +  I    P + Q
Sbjct: 123 KNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   L+ + E FL++P+ I+V   + T + +E  F         +        
Sbjct: 183 RVLFSATMPPMLKSIVERFLRDPETIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLET 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D     I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 243 EETD---ASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    ++ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRT 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE++ +  ++ +        P  +K+  A+                  +      ++K H
Sbjct: 360 IERVTKSSMEEIQ------LPHRDKVAEAR----------------LAKLGAELETEKEH 397

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
             L++  ++    Q+  E DA +L       A +L + +GK  
Sbjct: 398 KALEKFAELVDKLQESLELDAATLA------AILLKRQQGKRP 434


>gi|84498694|ref|ZP_00997447.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
 gi|84381031|gb|EAP96918.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
          Length = 601

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 141/372 (37%), Positives = 211/372 (56%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLGL  +V+ A+ D GY  P+PIQ  TIP +L    V G+AQTGTGKTA+F LP+L+
Sbjct: 22  TFSDLGLDERVLRALKDVGYETPSPIQAATIPALLAGRHVVGLAQTGTGKTAAFALPILS 81

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+    + + P+ L+L PTRELA QV + FEKY         L +  G  +  Q   L 
Sbjct: 82  RLDL---KQKTPQALVLAPTRELALQVCEAFEKYASRMPGVHVLPVYGGQAYGVQLSALR 138

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGRI+DH  +G L ++ +  LV+DEAD ML MGF   ++ I +  P  +  
Sbjct: 139 RGVHIVVGTPGRIMDHLEKGTLDLSELRFLVLDEADEMLKMGFAEDVETILADTPAEKHV 198

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  +++++S+ +L +   I V   + TA  I   ++                ++
Sbjct: 199 ALFSATMPSQIRRISKKYLTDALEITVERTTETAPNITQRYLFCSYPQKIDALTRILEVE 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + M   I+F   K     L   L  +GFS  AI+G+I Q  R + ++  K G + ++V
Sbjct: 259 NFEGM---IVFVRTKNETEMLAEKLRARGFSATAINGDIAQNQRERTVAQLKSGKLDILV 315

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A + V   +   + AI
Sbjct: 316 ATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFVTPREKYLLKAI 375

Query: 361 EKLIEKKVDWLN 372
           EK  +  +  + 
Sbjct: 376 EKATKTTLTEMQ 387


>gi|153950343|ref|YP_001400107.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis IP
           31758]
 gi|170023425|ref|YP_001719930.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis YPIII]
 gi|152961838|gb|ABS49299.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis IP
           31758]
 gi|169749959|gb|ACA67477.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           YPIII]
          Length = 441

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 144/446 (32%), Positives = 225/446 (50%), Gaps = 12/446 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP + 
Sbjct: 5   NFSELDLDERLIDALRDKGYERPTAIQASAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K   L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKYTQLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ T GR+L +          +E L++DEADRMLDMGF   I+ I++   + +QT
Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  E  +     + N     +    S  E  +       A   K    L   L 
Sbjct: 185 LLFSATLEGEAIREFAERILNEPVE-LEADPSRRERKKIQQWYYRADDIKHKTALLCHLL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   IIF   ++ V  L   L + G +   + G + Q  R + +    +G + ++V
Sbjct: 244 KQPDVSKSIIFVRTRERVHELVSWLREAGINAWFLEGEMVQAKRTEAVIRLGDGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  I
Sbjct: 304 ATDIASRGLDIDDISHVFNFDMPRTADVYLHRIGRTGRAGRKGVAISLVEAHDHILLGKI 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
            + + + +      +  L P       ++    +      +K     + +K  S +K  +
Sbjct: 364 GRYLNEPLK--PRVIDELRP------TSKAPSEKATGKPSKKVLAKRKEQKEASKEKVKV 415

Query: 421 PL--KESEKISKLQQDIQENDADSLG 444
            +  ++++ + K +    + D  S G
Sbjct: 416 KVRHRDAKNVGKRRTPKAKPDTKSAG 441


>gi|242791510|ref|XP_002481772.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218718360|gb|EED17780.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 387

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L 
Sbjct: 14  TFEDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     VR  + L+L PTRELA Q+       G   N+     IGG       +KLE 
Sbjct: 74  VIDTV---VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEY 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 131 GQHVVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVV 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 191 VVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDL--YD 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++++
Sbjct: 249 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIS 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  +D++ +  IE
Sbjct: 309 TDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIE 368

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 369 LYYSTQIDEMPMNVADL 385


>gi|212534920|ref|XP_002147616.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|212534922|ref|XP_002147617.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|242791505|ref|XP_002481771.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
 gi|210070015|gb|EEA24105.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|210070016|gb|EEA24106.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|218718359|gb|EED17779.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 399

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L 
Sbjct: 26  TFEDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     VR  + L+L PTRELA Q+       G   N+     IGG       +KLE 
Sbjct: 86  VIDTV---VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEY 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 143 GQHVVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 203 VVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDL--YD 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++++
Sbjct: 261 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIS 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  +D++ +  IE
Sbjct: 321 TDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 381 LYYSTQIDEMPMNVADL 397


>gi|77918185|ref|YP_356000.1| DNA/RNA helicase [Pelobacter carbinolicus DSM 2380]
 gi|77544268|gb|ABA87830.1| DNA/RNA helicase, ATP-dependent, DEAD-box family [Pelobacter
           carbinolicus DSM 2380]
          Length = 432

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 151/405 (37%), Positives = 230/405 (56%), Gaps = 7/405 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F      P+V   ++ AGYV PTPIQ + IP V+   DV G+AQTGTGKTA+F LP+L
Sbjct: 1   MEFNSFNFHPQVAKGIVAAGYVTPTPIQAQAIPSVIDGRDVMGLAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  G       R L++ PTRELA Q+     + G++  L    + GG+    Q   L+
Sbjct: 61  QRLIDGPR--GRLRALVVAPTRELAEQIHQAIGELGRHTGLRSMTVYGGVNIRPQIAGLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+++  PGR++DH  +  + ++NIE+LV+DEAD+M DMGF P ++ I   VP  RQT
Sbjct: 119 RGVDIVVACPGRLIDHIGQKTIDLSNIEVLVLDEADQMFDMGFFPAVRQILRHVPAQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++S   L +P  ++V   +         +     Q +     L     
Sbjct: 179 LLFSATMPAAIRRLSGEVLTSPMTVQVGNTTPAETVSHALYPVAQHQKTAMLLELL---- 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S    ++ ++F   K     L   L K G+   ++ GN+ Q  R + L+ F++G  +++V
Sbjct: 235 SAVDSRSVLVFTRTKHRAKRLGLQLGKAGYQATSLQGNLSQARRQEALTGFRDGKYEILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV N+D+P+ AE Y+HRIGRTGRA R G+AFTLV  ED   + AI
Sbjct: 295 ATDIAARGIDVSQVSHVINYDIPDTAEAYVHRIGRTGRASRKGEAFTLVTGEDNAMVRAI 354

Query: 361 EKLIEKKVDWLNGDLSSLN-PPLEKIDIAQHNHARKNNPIPQKST 404
           EK+++  ++    +    N P   + D A   +A + +P   +S+
Sbjct: 355 EKVLDASLERRTIEGFDYNTPAPPRTDRAGRGNASRRSPRTTRSS 399


>gi|22125187|ref|NP_668610.1| ATP-dependent RNA helicase SrmB [Yersinia pestis KIM 10]
 gi|45442294|ref|NP_993833.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51597216|ref|YP_071407.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis IP
           32953]
 gi|108808436|ref|YP_652352.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Antiqua]
 gi|108811359|ref|YP_647126.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Nepal516]
 gi|145598847|ref|YP_001162923.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Pestoides F]
 gi|149365400|ref|ZP_01887435.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125]
 gi|162420447|ref|YP_001607925.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Angola]
 gi|165925272|ref|ZP_02221104.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165937169|ref|ZP_02225734.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166008251|ref|ZP_02229149.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212404|ref|ZP_02238439.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399586|ref|ZP_02305110.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167421460|ref|ZP_02313213.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167423084|ref|ZP_02314837.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167470537|ref|ZP_02335241.1| ATP-dependent RNA helicase SrmB [Yersinia pestis FV-1]
 gi|186896313|ref|YP_001873425.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis PB1/+]
 gi|218929780|ref|YP_002347655.1| ATP-dependent RNA helicase SrmB [Yersinia pestis CO92]
 gi|229838271|ref|ZP_04458430.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229895533|ref|ZP_04510704.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|229898835|ref|ZP_04513980.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229901609|ref|ZP_04516731.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|270489798|ref|ZP_06206872.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294504499|ref|YP_003568561.1| ATP-dependent RNA helicase [Yersinia pestis Z176003]
 gi|21958051|gb|AAM84861.1|AE013731_6 ATP-dependent RNA helicase [Yersinia pestis KIM 10]
 gi|45437158|gb|AAS62710.1| ATP-dependent RNA helicase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590498|emb|CAH22138.1| ATP-dependent RNA helicase [Yersinia pseudotuberculosis IP 32953]
 gi|108775007|gb|ABG17526.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|108780349|gb|ABG14407.1| ATP-dependent RNA helicase [Yersinia pestis Antiqua]
 gi|115348391|emb|CAL21327.1| ATP-dependent RNA helicase [Yersinia pestis CO92]
 gi|145210543|gb|ABP39950.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides F]
 gi|149291813|gb|EDM41887.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125]
 gi|162353262|gb|ABX87210.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Angola]
 gi|165915032|gb|EDR33644.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165922879|gb|EDR40030.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992633|gb|EDR44934.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206335|gb|EDR50815.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166960949|gb|EDR56970.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167052090|gb|EDR63498.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057254|gb|EDR67000.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|186699339|gb|ACC89968.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229681538|gb|EEO77632.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|229688383|gb|EEO80454.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229694637|gb|EEO84684.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701339|gb|EEO89367.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|262362509|gb|ACY59230.1| ATP-dependent RNA helicase [Yersinia pestis D106004]
 gi|262366486|gb|ACY63043.1| ATP-dependent RNA helicase [Yersinia pestis D182038]
 gi|270338302|gb|EFA49079.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294354958|gb|ADE65299.1| ATP-dependent RNA helicase [Yersinia pestis Z176003]
 gi|320016083|gb|ADV99654.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 441

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 145/430 (33%), Positives = 217/430 (50%), Gaps = 12/430 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP + 
Sbjct: 5   NFSELDLDERLIDALRDKGYERPTAIQASAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K   L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKYTQLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ T GR+L +          +E L++DEADRMLDMGF   I+ I++   + +QT
Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  E  +     + N     +    S  E  +       A   K    L   L 
Sbjct: 185 LLFSATLEGEAIREFAERILNEPVE-LEADPSRRERKKIQQWYYRADDIKHKTALLCHLL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   IIF   ++ V  L   L + G +   + G + Q  R + +    +G + ++V
Sbjct: 244 KQPDVSKSIIFVRTRERVHELVSWLREAGINAWFLEGEMVQAKRTEAVIRLGDGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  I
Sbjct: 304 ATDIASRGLDIDDISHVFNFDMPRTADVYLHRIGRTGRAGRKGVAISLVEAHDHILLGKI 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
            + + + +      +  L P            + K    P K     +RK+   S K  +
Sbjct: 364 GRYLNEPLK--PRVIDELRP-------TSKAPSEKATGKPSKKV-LAKRKEQKESSKEKV 413

Query: 421 PLKESEKISK 430
            +K   + +K
Sbjct: 414 KVKVRHRDAK 423


>gi|260943624|ref|XP_002616110.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238849759|gb|EEQ39223.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 477

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 135/416 (32%), Positives = 216/416 (51%), Gaps = 13/416 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L L P+++ A+    + KPTPIQ + IP  L+  DV G+A TG+GKTA+F +P+L 
Sbjct: 66  SFTELKLIPELLEAIQSMKFTKPTPIQAEAIPHALEGKDVIGLAVTGSGKTAAFAIPILQ 125

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            L   +        L+L PTRELA Q+ D F+  G    L    ++GG+    Q +  + 
Sbjct: 126 SLWHDQLPYY---CLVLSPTRELAYQIKDTFDALGSGMGLRACCIVGGMDMMDQARDLMR 182

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      +    +     + N++ LV+DEADR+LD+ F P +  I  ++P  R T
Sbjct: 183 KPHVIVATPGRIVDHLEHTKGFSLKNLKYLVMDEADRLLDLDFGPELDKILRVIPRERNT 242

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT++++K+    L NP RI V++   TA+ +    +     Y     +      
Sbjct: 243 YLFSATMTNKIEKLQRASLNNPVRIAVSSKYQTADNLVQSMMLVSDGYKNTYLVHLL--- 299

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   K+ IIF     +           GFS   +HG + Q  R+  L+ FK G   ++V
Sbjct: 300 NEFVGKSIIIFTRTCAHSQRTALLARILGFSAVPLHGQLSQSQRLGSLNKFKSGKANILV 359

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V N+D+P  ++ YIHR+GRT RAGR GK+ +LV + D++    I
Sbjct: 360 ATDVAARGLDIPAVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLVTQYDLEMYLRI 419

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           E +++KK+           PP + +D    +  R      +++  F  +K    S+
Sbjct: 420 EAVLQKKLP------KDPAPPKDVLDALHVHVDRATAEAIKQTKDFHEKKGKKKSR 469


>gi|238893853|ref|YP_002918587.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae NTUH-K2044]
 gi|238546169|dbj|BAH62520.1| putative ATP-dependent RNA helicase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 451

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 157/374 (41%), Positives = 228/374 (60%), Gaps = 6/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ AV + GYV+PTPIQ + IP VLQ  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L +        R  R LIL PTRELAAQV +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QRLIQNEPHAKGRRPVRALILTPTRELAAQVGENVCDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDIRRVLAKLPAR 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++E  L NP  +EV   ++ +E I            ++      
Sbjct: 181 RQNLLFSATFSDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQL- 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 240 --IGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL 371
             IE+L++K++  +
Sbjct: 358 RDIERLLKKEIPRI 371


>gi|31542656|ref|NP_061943.2| probable ATP-dependent RNA helicase DDX49 [Homo sapiens]
 gi|114676212|ref|XP_512518.2| PREDICTED: probable ATP-dependent RNA helicase DDX49 [Pan
           troglodytes]
 gi|74753527|sp|Q9Y6V7|DDX49_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX49; AltName:
           Full=DEAD box protein 49
 gi|2443870|gb|AAB81544.1| R27090_2 [Homo sapiens]
 gi|12803677|gb|AAH02674.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Homo sapiens]
 gi|119605165|gb|EAW84759.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49, isoform CRA_b [Homo
           sapiens]
 gi|312152524|gb|ADQ32774.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [synthetic construct]
          Length = 483

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 159/472 (33%), Positives = 237/472 (50%), Gaps = 31/472 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  LSE---DPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 123 ADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI---QNITSLVPFTR 178
             V+I TPGR      +     +  I  LV+DEADR+L+ G   +    + I + VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQ 237
           QTLLFSAT+TD L+++       P   E   P ST E ++  ++             L Q
Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQ 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             Q +    + IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK    +
Sbjct: 241 RFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI  +
Sbjct: 301 ILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLV 360

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK------ 411
            AIE+ I+KK++  + + + +   L      Q N  R+   I  ++  FD +K+      
Sbjct: 361 HAIEEQIKKKLEEFSVEEAEVLQIL-----TQVNVVRRECEIKLEAAHFDEKKEINKRKQ 415

Query: 412 ------------NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
                          ++ + I  K      K+++ ++   A   G +G  P 
Sbjct: 416 LILEGKDPDLEAKRKAELAKIKQKNRRFKEKVEETLKRQKAGRAGHKGRPPR 467


>gi|160883549|ref|ZP_02064552.1| hypothetical protein BACOVA_01521 [Bacteroides ovatus ATCC 8483]
 gi|237722794|ref|ZP_04553275.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|293371813|ref|ZP_06618223.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CMC 3f]
 gi|299147643|ref|ZP_07040707.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_23]
 gi|156110962|gb|EDO12707.1| hypothetical protein BACOVA_01521 [Bacteroides ovatus ATCC 8483]
 gi|229447316|gb|EEO53107.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292633265|gb|EFF51836.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CMC 3f]
 gi|298514430|gb|EFI38315.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_23]
          Length = 374

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 150/372 (40%), Positives = 223/372 (59%), Gaps = 5/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L ++  ++ A+ + GY  PTPIQ + IP  L + D+ G AQTGTGKTASF +P++
Sbjct: 1   MTFKELNITEPILKAIEEKGYAVPTPIQGEAIPAALAKRDILGCAQTGTGKTASFAIPII 60

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L+  +   + R  + LIL PTRELA Q+++    Y K   +   ++ GG+    Q   
Sbjct: 61  QHLQMNKEAAKCRGIKALILTPTRELALQISECINDYAKYTQVRHGVIFGGVNQRPQVDM 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD  N+G + ++ I+  V+DEADRMLDMGFI  I+ I   +P  +
Sbjct: 121 LHKGIDILVATPGRLLDLMNQGHIHLDKIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM D +  ++ + L+NP RI +   SST + I       Y    K+ +LL   
Sbjct: 181 QTLFFSATMPDTIISLTNSLLKNPVRISITPKSSTVDAI---EQMVYFVEKKEKSLLLVS 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   ++ ++F   K N   +   L K G    AIHGN  Q +R   L NFK G  ++
Sbjct: 238 ILQKSEDQSVLVFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQLALGNFKSGKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A T  ++E+ K ++
Sbjct: 298 MVATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQEERKLVN 357

Query: 359 AIEKLIEKKVDW 370
            I+KL  KK++ 
Sbjct: 358 DIQKLTGKKLNK 369


>gi|78486348|ref|YP_392273.1| DEAD/DEAH box helicase-like [Thiomicrospira crunogena XCL-2]
 gi|78364634|gb|ABB42599.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
          Length = 574

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 137/373 (36%), Positives = 225/373 (60%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DLGLS  ++  + + GY  P+PIQ + IP++L+  D+ G+AQTGTGKTA+F LP+L
Sbjct: 5   IKFSDLGLSAPILKTLEEIGYETPSPIQEQAIPVLLKGGDILGMAQTGTGKTAAFALPIL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKL 119
           + ++    + + P+ L+L PTRELA QVA+ F+ + +       L I G   +  Q + L
Sbjct: 65  SKIDL---KQKDPQVLVLAPTRELAIQVAEAFQTFSRGVKGLHVLPIYGGSEYGTQIRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGR++DH  +G L ++ ++++++DEAD ML MGFI  ++ I    P TRQ
Sbjct: 122 KRGVHVVVGTPGRVMDHIKKGTLKLDTLKVMILDEADEMLRMGFIDDVEWILKHTPDTRQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  E+ +++  +LQ+P  + +   ++TA  IE  +      +           
Sbjct: 182 IALFSATMPKEVHRIANTYLQDPTEVIIKQKAATASLIEQKYWLVSGLHKLDALTRILEA 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++ D +   IIF   K   V L   LE +G++  A++G++ Q  R + +   K+G + ++
Sbjct: 242 ETFDGI---IIFVRTKTATVELAEKLEARGYAAAALNGDVAQNQRERTVDQLKKGKLDIL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+ ARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A   VA  + + + +
Sbjct: 299 IATDVVARGLDVERISHVINYDIPYDNESYVHRIGRTGRAGRSGTAILFVAPRERRLLRS 358

Query: 360 IEKLIEKKVDWLN 372
           IE   +KK+  + 
Sbjct: 359 IEASTKKKITQME 371


>gi|322804966|emb|CBZ02525.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum H04402 065]
          Length = 425

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 171/425 (40%), Positives = 258/425 (60%), Gaps = 11/425 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   +  A+ + GY K TPIQ K+IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L K +   + PR++   +L PTRELA Q+ ++FE YGK  NL  A++ GG+    Q K
Sbjct: 61  QNLSKDKKANKNPRSIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+LI TPGR+LD FN+  + + NIE  V+DEADRMLDMG I  ++ I S +P  
Sbjct: 121 VLREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKI 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  E+ K+ ++ +++P R+EV   SST +TI       Y    K+   L +
Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTI---TQEVYHVRKKQKRALLK 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++++ ++F   K+    +   L + G    AIHGN  Q +R + L+NFKEG I+
Sbjct: 238 HLLKDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HVFN+++P+  E Y+HRIGRTGRAG  G A +    E+ K +
Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357

Query: 358 DAIEKLIEKKVDWL---NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS--TGFDRRKKN 412
            AIEKLI K++  +      +  +N    K +  ++N+ +K +   Q       + R+KN
Sbjct: 358 KAIEKLIHKEIPVVEDHPYKIRHINEDEVKKENTKNNYNKKPSSKRQGGNWRYSNNRRKN 417

Query: 413 YSSQK 417
            S+++
Sbjct: 418 NSTKQ 422


>gi|45358020|ref|NP_987577.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           maripaludis S2]
 gi|44920777|emb|CAF30013.1| Probable ATP dependent RNA helicase [Methanococcus maripaludis S2]
          Length = 538

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 137/370 (37%), Positives = 219/370 (59%), Gaps = 7/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
            F +LGLS +++ A+   G+  PTPIQ + IP++++   D+ G AQTGTGKTA+F +P+L
Sbjct: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++     +    LIL PTRELA QVA+  +    +  L V  + GG   + Q ++L 
Sbjct: 63  ETIDEHSRNTQA---LILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIRELR 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGRILDH +R  + + N+  +V+DEAD ML+MGFI  ++ I   V   ++ 
Sbjct: 120 RGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRM 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ D + K+++N+++    I+V     T         + Y  +S+    L   + 
Sbjct: 180 LLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLT---DQSFYEIHSRDKFELLSRII 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +    G+IFC  K +V  + + L ++G++   +HG++ Q  R K L  FK   I ++V
Sbjct: 237 DTEKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV NFD+P   E+Y+HRIGRTGRAG+ G A T V   + +    I
Sbjct: 297 ATDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYI 356

Query: 361 EKLIEKKVDW 370
           +K+ + ++  
Sbjct: 357 QKIAKTEIKR 366


>gi|319775896|ref|YP_004138384.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
 gi|317450487|emb|CBY86704.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
          Length = 613

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 138/405 (34%), Positives = 229/405 (56%), Gaps = 20/405 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 5   ITFNNLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E + K      +  L GG  ++ Q + L
Sbjct: 65  AQIDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 122 KQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+ +P+ +++       E       + +  +  +        
Sbjct: 182 TALFSATMPEPIRRITKRFMNDPQEVKIKV---NNENAPDIDQSCWYVHGVRKNEALLRF 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   +  ++ ++
Sbjct: 239 LEVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNRSLDIV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 299 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 358

Query: 360 IEKLIEKKVDWLN-------------GDLSSLNPPLEKIDIAQHN 391
           IE L++K ++ +                ++ +   LE  D+ Q+ 
Sbjct: 359 IEHLMKKGINEVELPNHEVLQECRRKKFVAKITKQLEHHDLEQYR 403


>gi|313241110|emb|CBY33407.1| unnamed protein product [Oikopleura dioica]
          Length = 847

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 144/448 (32%), Positives = 226/448 (50%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            +A  G S KV+  +    + KPTPIQ + +P ++   DV GIA+TG+GKT  FVLPM  
Sbjct: 349 TWAQSGCSSKVLTLIKRMKFEKPTPIQAQCLPAIMSGRDVIGIAKTGSGKTLGFVLPMLR 408

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               ++   +   P  +I+ PTRELA Q+  +  K+  +       + GG     Q  +L
Sbjct: 409 HMEHQREVEKGEGPIAVIMTPTRELAIQITKDTRKFANHMRWRTVCVYGGTGISEQISEL 468

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA+++ICTPGR++D     N     +      V+DEADRM DMGF P + +I + V  
Sbjct: 469 KRGAEIIICTPGRMIDMLAANNGRVTNLRRCTYCVLDEADRMFDMGFEPQVMHILNSVRP 528

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ +LFSAT    ++ ++   L  P  I V   S   +               K   L 
Sbjct: 529 DRQLVLFSATFPRSMEALARRILTKPLEITVGGKSVVCDD--VQQNVVVLNDEDKFLKLL 586

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + I+F ++ +    L   + K G+   A+HG +DQ  R  ++++FK+G  
Sbjct: 587 ELLGRFQESGSVIVFTHKHEVADALLKEVLKAGYPAQALHGGMDQYDRDSVINDFKKGVS 646

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L++A+ +AARGLD+ ++  V NFD PN  E+Y+HR GRTGRAG  G A+T + +E+ K+
Sbjct: 647 NLLIATSVAARGLDVKNLILVVNFDCPNHYEDYVHRCGRTGRAGNKGTAYTFLTEEEGKY 706

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     +   L +L    E+  + Q     K     QKS+GF      +   
Sbjct: 707 AGDIIKALEMSKAEVPKHLENL---WERYKLNQE----KLGKTVQKSSGFSGSGFKFDEA 759

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           ++ +  K+ + + K      E+D +  G
Sbjct: 760 ENQMD-KDRKNMQKQALGYHESDDEDTG 786


>gi|313238875|emb|CBY13871.1| unnamed protein product [Oikopleura dioica]
          Length = 1036

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 144/448 (32%), Positives = 226/448 (50%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            +A  G S KV+  +    + KPTPIQ + +P ++   DV GIA+TG+GKT  FVLPM  
Sbjct: 373 TWAQSGCSSKVLTLIKRMKFEKPTPIQAQCLPAIMSGRDVIGIAKTGSGKTLGFVLPMLR 432

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               ++   +   P  +I+ PTRELA Q+  +  K+  +       + GG     Q  +L
Sbjct: 433 HMEHQREVEKGEGPIAVIMTPTRELAIQITKDTRKFANHMRWRTVCVYGGTGISEQISEL 492

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA+++ICTPGR++D     N     +      V+DEADRM DMGF P + +I + V  
Sbjct: 493 KRGAEIIICTPGRMIDMLAANNGRVTNLRRCTYCVLDEADRMFDMGFEPQVMHILNSVRP 552

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ +LFSAT    ++ ++   L  P  I V   S   +               K   L 
Sbjct: 553 DRQLVLFSATFPRSMEALARRILTKPLEITVGGKSVVCDD--VQQNVVVLNDEDKFLKLL 610

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + I+F ++ +    L   + K G+   A+HG +DQ  R  ++++FK+G  
Sbjct: 611 ELLGRFQESGSVIVFTHKHEVADALLKEVLKAGYPAQALHGGMDQYDRDSVINDFKKGVS 670

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L++A+ +AARGLD+ ++  V NFD PN  E+Y+HR GRTGRAG  G A+T + +E+ K+
Sbjct: 671 NLLIATSVAARGLDVKNLILVVNFDCPNHYEDYVHRCGRTGRAGNKGTAYTFLTEEEGKY 730

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     +   L +L    E+  + Q     K     QKS+GF      +   
Sbjct: 731 AGDIIKALEMSKAEVPKHLENL---WERYKLNQE----KLGKTVQKSSGFSGSGFKFDEA 783

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           ++ +  K+ + + K      E+D +  G
Sbjct: 784 ENQMD-KDRKNMQKQALGYHESDDEDTG 810


>gi|255326780|ref|ZP_05367856.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
 gi|255295997|gb|EET75338.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
          Length = 744

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 149/392 (38%), Positives = 228/392 (58%), Gaps = 7/392 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL  +V+ A+ + GY KP+PIQ +TIPL+L+ HDV G+AQTGTGKTA+F LP L+ 
Sbjct: 68  FTDLGLDARVLAALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPALSR 127

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKK 118
           +          R  + L+L PTRELA QVA+ F  Y  +      L I  G P+  Q   
Sbjct: 128 MAELADVNGISRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAG 187

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RGA V++ TPGR++DH  +G L ++N++ LV+DEAD ML MGF   ++ I    P ++
Sbjct: 188 LRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDSK 247

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q  LFSATM + ++K+++ +L +P  I V   ++T+  I   ++     +          
Sbjct: 248 QVALFSATMPNSIRKIAQQYLNDPTEIRVKAKTTTSANISQRYMQVMHSHKLDAMTRVLE 307

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +++ D +   I+F   KK    +   L+ +GF+  AI+G+I Q+ R + +   ++G I +
Sbjct: 308 VENYDGI---IVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDI 364

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  +  V N+D+P+  E+Y+HRIGRTGRAGR G A   V   +   + 
Sbjct: 365 LVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYMLR 424

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
            IEK   +KV+ ++   +       K   AQ 
Sbjct: 425 QIEKATRQKVEPMHMPTAEAVNETRKQRFAQQ 456


>gi|167585895|ref|ZP_02378283.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
          Length = 487

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 176/481 (36%), Positives = 251/481 (52%), Gaps = 29/481 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+  ++ A+ + GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP+L 
Sbjct: 12  TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPILQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N   YGK+  L  A++ GG+    Q 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYGKHTPLRSAVVFGGVDMNPQM 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  +++LV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +            +   +  
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                   +K  I+FCN K     L  +LE+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 L---RSRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA---------------QHNHARKNNPIPQ 401
           +  IEKLI++ ++     L+   P   + D                 +H  A    P   
Sbjct: 369 LADIEKLIKRPLEV--QTLAIDKPARHRHDERGGERGGERGGRRERDEHRGAAGRRPAGA 426

Query: 402 KSTGFDRRKKNYSSQ---KSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
           +  G  RR +        K + P   +++  + +    E           +  F +P+  
Sbjct: 427 E-RGHHRRHEAPIDDFFLKPYEPSASAKQPEEAKPAPHEKKGPKRQVAALLGGFGMPRKP 485

Query: 459 G 459
            
Sbjct: 486 S 486


>gi|255067653|ref|ZP_05319508.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC
           29256]
 gi|255048127|gb|EET43591.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC
           29256]
          Length = 457

 Score =  173 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 153/413 (37%), Positives = 225/413 (54%), Gaps = 8/413 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QRLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPTDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    +NP+ IEV    +  +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKNPEIIEVERVDNQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            IEK I +K+  L  +      P  K   A      K     +KS G+   KK
Sbjct: 360 KIEKYIARKLPELTVE---GMEPTRKRKSAGGKPKGKGGWGDRKSGGWRGDKK 409


>gi|227538144|ref|ZP_03968193.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241987|gb|EEI92002.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 435

 Score =  173 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 160/420 (38%), Positives = 246/420 (58%), Gaps = 7/420 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL L   ++ A+  +GY  PTPIQ + IP++ QR D+   AQTGTGKTA+F +P+L
Sbjct: 18  LQFKDLKLIAPILKALEASGYQNPTPIQEQAIPIIFQRKDLLACAQTGTGKTAAFAIPIL 77

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L   + +   +  RTL+L PTRELA Q+ +NF+ Y K   +   ++ GG+  + Q   
Sbjct: 78  QMLTYSKEKTAQKRIRTLVLTPTRELAIQIKENFDAYSKELPIRNLVIYGGVGQQPQRDA 137

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+LI TPGR+LD +N+G + +  +E  V+DEADRMLDMGFI  ++ + S++P  R
Sbjct: 138 LRKGIDILIATPGRLLDLYNQGFIDLKQLEYFVLDEADRMLDMGFIHDVKKVISIIPKKR 197

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM  E+QK++ + L+ P ++EV   S+TAE I+           +        
Sbjct: 198 QTLLFSATMPAEIQKLASHILEEPSKVEVTPESTTAEKIQQSVYFVSKSDKRHLLTHLL- 256

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               + +++ ++F   K     +   L KQG    AIHGN  Q +R   LSNFK+  +++
Sbjct: 257 --KSENIEHTLVFSRTKHGADRIAKDLAKQGIQAAAIHGNKSQSARQNALSNFKDRKLRV 314

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI D+ +V NFD+PN  E+Y+HRIGRTGRAG+ GKA +    E+  ++ 
Sbjct: 315 LVATDIAARGIDIDDLSYVINFDLPNIPESYVHRIGRTGRAGKDGKAISFCDDEEYAYLL 374

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR--RKKNYSSQ 416
            IEK I  ++  +     SL+   +K   A        N    +S    +  R+  + ++
Sbjct: 375 DIEKSIRMEIPRVEDQPYSLHISPKKPGQAAKKPGTDKNRSKARSGASKKPFRRGKFKTK 434


>gi|197334932|ref|YP_002155940.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197316422|gb|ACH65869.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 431

 Score =  173 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 163/429 (37%), Positives = 242/429 (56%), Gaps = 12/429 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P++V A+ + GY K TPIQ K IPL  + HD+   AQTGTGKTA+F LP++
Sbjct: 1   MSFSSQGFAPEIVKALTECGYQKLTPIQQKAIPLARKGHDILANAQTGTGKTAAFALPVI 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L   +           IL PTRELA Q+A N   Y K  +LTV  + GG    +Q + 
Sbjct: 61  QQLLDSKKSATRRTARALILAPTRELAEQIAVNIADYTKYTSLTVTSVFGGKKMSSQERA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H     + + N+E LV DEADRMLDMGF+  I+NI   V  + 
Sbjct: 121 LEPGVDILVATPGRLQEHIEEENVSIANLEFLVFDEADRMLDMGFVNAIRNIMMEVNTSP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT + ++ K++ + L+ PKRI V+  ++TA TI H     Y    ++   L   
Sbjct: 181 QIMLFSATSSAQMNKLASDILRKPKRISVDPENTTASTIAH---VVYPVDEERKTELLSE 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +   +  ++F N K+    +   L+  G      HG+  Q +R + L  FKEG  ++
Sbjct: 238 LIGRKNWQQVLVFVNYKETANEIVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+   + 
Sbjct: 298 MVATDVAARGLDIADLPHVINYDMPFLAEDYVHRIGRTGRAGKKGHAISFVSREEELTVV 357

Query: 359 AIEKLIEKKVDWL------NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR-RKK 411
            +E LI++++  +        +  +    +      ++   R NNP   +S+   R R K
Sbjct: 358 QVETLIQQRIRRVEQPGYEPKNRDAYIDKVNTKSAFKNRKGRTNNPNEDQSSAERRMRLK 417

Query: 412 NYSSQKSHI 420
           N    K+ I
Sbjct: 418 NVIQNKARI 426


>gi|172040364|ref|YP_001800078.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
 gi|171851668|emb|CAQ04644.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
          Length = 778

 Score =  173 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 154/402 (38%), Positives = 236/402 (58%), Gaps = 9/402 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLSP+V  AV   G+ KP+PIQ +TIPL++   DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 133 FGDLGLSPEVFDAVRAVGFTKPSPIQEQTIPLLMAGEDVVGLAQTGTGKTAAFALPILSR 192

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L     + R P+ L+L PTRELA QVA++FE + +       L I  G P+ AQ   L R
Sbjct: 193 L---NLKSRKPQALVLAPTRELALQVAESFEDFAEKMGGVNILPIYGGQPYGAQLSGLRR 249

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  +G L ++ +  +V+DEAD ML+MGF   ++ I    P  +Q  
Sbjct: 250 GAHVVVGTPGRVIDHLQKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPEDKQVA 309

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++ +S+ +L +P+ + V +   TAE IE  ++  +    ++       +  
Sbjct: 310 LFSATMPSAIRHLSKRYLNSPQEVTVKSTQRTAENIEQDYLIVHH---REKLDALTRILE 366

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K +   L   L  +G+   AI+G+I Q  R + +   K+G + ++VA
Sbjct: 367 VTDFDAMIMFVRTKNDTEELAERLRARGYEAAAINGDIAQAQRERTVDQLKDGRLDILVA 426

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HVFN+D+P   E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 427 TDVAARGLDVERITHVFNYDIPRDTESYVHRIGRTGRAGRSGRAVLFVTPRERRMLKSIE 486

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           +  + +++ +  +L S++   E      +    KN   PQ S
Sbjct: 487 RATKSRLNEI--ELPSVDQVNEARKAKFNRELTKNLEDPQVS 526


>gi|325188274|emb|CCA22814.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 414

 Score =  173 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+ KP+ IQ + +  +L  HD    AQ+GTGKTA+F + +L 
Sbjct: 42  TFDAMELREDLLRGIYAYGFEKPSAIQQRAVKPILLGHDCIAQAQSGTGKTATFTVSILQ 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +    LIL PTRELA Q+       G   ++ V   +GG         L++
Sbjct: 102 KININLKETQA---LILAPTRELAQQIVKVIAAIGDYMSINVHACVGGTAVRDDIHTLQQ 158

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D  N+G L    +++ V+DEAD ML  GF   I ++   +P + Q  
Sbjct: 159 GVHIVVGTPGRVGDMINQGALRTEAVKMFVLDEADEMLSRGFQDQIYDVFRFLPESVQVA 218

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+ +V++ F+++P RI V     T E I+  FVA   +  K   L       
Sbjct: 219 LFSATMPQEVLEVTQKFMRDPIRIMVKRDELTLEGIKQFFVAIEREEWKFDTLCDL--YE 276

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   II+CN ++ V  L   ++ + F+V A+HG++DQR R  I+  F+ G+ ++++ 
Sbjct: 277 TLTITQAIIYCNTRRKVDWLTEKMQSKDFTVSAMHGDMDQRQRDIIMREFRSGSSRVLIT 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   + + D++++  IE
Sbjct: 337 TDLLARGIDVQQVSLVVNYDLPLNRENYIHRIGRSGRFGRKGVAINFLTECDVRYLKDIE 396

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    +++ +  +++ L
Sbjct: 397 KFYNTQIEEMPMNVADL 413


>gi|262273976|ref|ZP_06051788.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
 gi|262221786|gb|EEY73099.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
          Length = 441

 Score =  173 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 124/416 (29%), Positives = 201/416 (48%), Gaps = 6/416 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F DLGL  +++  +   G+  PT +Q   IP+V    D+   ++TG+GKT +F+LP +
Sbjct: 1   MQFEDLGLDKRLLKTMELWGFDTPTDVQASAIPVVCAGKDLLASSKTGSGKTLAFLLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++         PR ++L PTREL  QV     K          L++GG  F  Q K+ 
Sbjct: 61  QRVMRSKAFSRSGPRVVVLAPTRELVKQVYGELRKLLAGTQFKGMLILGGENFNDQAKEF 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +    ++ TPGR+ DH     L +  +E+L++DEADRMLD+GF P ++ I S     R+
Sbjct: 121 RKNPAFIVATPGRLADHLEHRHLSLEGLELLILDEADRMLDLGFAPQLKAINSAANHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  Q              V       E  +         +      L   +
Sbjct: 181 QTLMFSATLDHQQVNEIAADMLKDPKRVAIGFVNEEHKDIEQRFFLCDHLDHKQALLDRV 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q++ +  +IF   + +   L     ++G    A+ G++ Q +R +I++ F+ G  +++
Sbjct: 241 MEQESYQQVMIFTATRADTDRLATWFVERGIKAVALSGDLSQSARNRIMNEFERGLHKVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDI +V HV NFD+P  AE Y+HRIGRTGRAG  G A + V  +D      
Sbjct: 301 VTTDVASRGLDISNVSHVVNFDMPKHAEEYVHRIGRTGRAGNKGIAISFVGPKDWNSFKN 360

Query: 360 IEKLIEKK-----VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           IE  ++K+     ++ L G    L P  +K    +  H +K +   QK     +++
Sbjct: 361 IEGFLDKRMSFQTLEGLEGKFKGLAPKKKKTFSKKPQHKKKGDKPTQKKAAVPKKR 416


>gi|302879666|ref|YP_003848230.1| DEAD/DEAH box helicase domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302582455|gb|ADL56466.1| DEAD/DEAH box helicase domain protein [Gallionella
           capsiferriformans ES-2]
          Length = 504

 Score =  173 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 174/449 (38%), Positives = 254/449 (56%), Gaps = 10/449 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA L L+  ++ A+ DAGY +PTP+Q + IPLVL   D+   AQTGTGKTA F LP+L
Sbjct: 10  VTFASLNLAEPIMRAIADAGYTQPTPVQAQAIPLVLAGGDLLAGAQTGTGKTAGFTLPVL 69

Query: 61  T---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                          PR LIL PTRELAAQV ++ + YGK  +L   ++ GG+    Q K
Sbjct: 70  HLLNSRPAANPGAGRPRCLILTPTRELAAQVEESVQTYGKYLSLKSLVMFGGVNINPQIK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L    D+L+ TPGR+LDH  +  L ++ +EIL++DEADRMLDMGFI  I+ I +L+P T
Sbjct: 130 SLRGQVDILVATPGRLLDHVGQKTLDLSAVEILILDEADRMLDMGFIRDIKKILALLPKT 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT ++E++ +S+  L NP  +EV   ++T+E +            K  + L  
Sbjct: 190 RQNLLFSATFSEEIKTLSDGLLNNPGFVEVARRNTTSELVAQTVHMVAQ---KLKSHLLS 246

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   +  K  ++F   K     L   L   G    AIHGN  Q +R K LS FK+GT+ 
Sbjct: 247 HLIKHNDWKQVLVFTRTKHGANRLAEKLNADGIPAAAIHGNKSQSARTKALSQFKDGTMP 306

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAG +G A +LV  E+++H+
Sbjct: 307 VLVATDIAARGLDIDMLPHVVNFELPNVPEDYVHRIGRTGRAGSNGAAISLVDSEELQHL 366

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE+LI+ ++  +  D  S  PP      A      ++      +T     ++  + + 
Sbjct: 367 KDIERLIKTQIPRIAID--SFVPPTHIPPEAPRPPRPQHGQKRHSNTTARPPREGQAPRD 424

Query: 418 SHIPLKESE--KISKLQQDIQENDADSLG 444
            + P +E +    ++  +D Q       G
Sbjct: 425 GNRPPREGQGPTGNRAPRDPQARTQPPRG 453


>gi|167526114|ref|XP_001747391.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774226|gb|EDQ87858.1| predicted protein [Monosiga brevicollis MX1]
          Length = 504

 Score =  173 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 149/391 (38%), Positives = 220/391 (56%), Gaps = 5/391 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+  +  A     + KPT IQ ++IPL LQ  DV G+A+TG+GKTA+F LP+L 
Sbjct: 82  TFADLGLAEVLCEACATLKFTKPTEIQRRSIPLALQGKDVIGLAETGSGKTAAFALPVLH 141

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   + +      L+L PTRELA Q+   F   G    L  A+L+GGI    Q   L +
Sbjct: 142 DLLATKGKKEF-FALVLAPTRELAFQIRQTFNALGSPIGLKSAVLVGGIDMTTQAIALAK 200

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              VLI TPGR++DH    K      +  L++DEADRML+M +   +  I +++P  R+T
Sbjct: 201 KPHVLIATPGRLVDHLENTKGFHLKALRYLIMDEADRMLNMDYEKELDKILAVIPRERRT 260

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+    L++P ++EVN+   T +T+   ++       K        L 
Sbjct: 261 FLFSATMTSKVGKLQRASLRDPVKVEVNSKYKTVDTLIQRYMFVPQ---KFKDCYLIYLM 317

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +Q    + IIFC+   NV+     L   GF    +HG + Q  R+  L+ F   +  ++V
Sbjct: 318 NQLRGNSFIIFCSTCNNVMKATLVLRDLGFDAVCLHGQMSQPKRLGALAKFTSQSHTILV 377

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR G A T+  + D++    I
Sbjct: 378 ATDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGHAITIATQYDVELFQRI 437

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
           E LI KK++    + S +   LE++  AQ N
Sbjct: 438 EALIGKKMEEYPTESSQVLQLLERVSDAQRN 468


>gi|319944884|ref|ZP_08019146.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
 gi|319741454|gb|EFV93879.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
          Length = 489

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 149/376 (39%), Positives = 221/376 (58%), Gaps = 6/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ LGL+  ++ A+ D GY  PTPIQ K IP+VL   D+   AQTGTGKTA F LP+L 
Sbjct: 14  SFSGLGLADPLLRALADVGYTNPTPIQAKAIPVVLTGRDLLAAAQTGTGKTAGFTLPILQ 73

Query: 62  I---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                     +   PR LIL PTREL AQV ++ + Y K   +   L+ GG+    Q + 
Sbjct: 74  RLLDNPMQTRKPGRPRCLILTPTRELTAQVEESVKAYAKYTRIRSVLIFGGVSINPQIQA 133

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+L+ TPGR+LDH  +G + ++ +EI V+DEADRMLDMGFI  I+ + + +P  R
Sbjct: 134 LRQPVDILVATPGRLLDHVQQGTVDLSGVEIFVLDEADRMLDMGFIHDIRRVIAKLPAKR 193

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT + E++ ++   L NP  ++V   ++ +E +            +        
Sbjct: 194 QNLLFSATFSPEIRSLAHGLLDNPAEVDVAPRNTASELVAQSAHLVPKTRKRALLSYL-- 251

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  K  ++F   K     L   L K G    AIHGN  Q +R + LS FK+G++ +
Sbjct: 252 -IGSRRWKQVLVFTKTKHGANRLAEQLGKDGIEAMAIHGNKSQGARTRALSRFKDGSLPV 310

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRAG  G A +LV +E++K + 
Sbjct: 311 LVATDIAARGLDIDELPHVVNYELPNVPEDYVHRIGRTGRAGHEGTAVSLVDREEMKLLT 370

Query: 359 AIEKLIEKKVDWLNGD 374
            IE+LI++++  +  +
Sbjct: 371 GIERLIKRQIPRVEVE 386


>gi|171317466|ref|ZP_02906657.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
 gi|171097362|gb|EDT42206.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
          Length = 480

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 156/373 (41%), Positives = 225/373 (60%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + ++N++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAE++            ++     
Sbjct: 181 QRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKVD 369
           +  IE+LI++++ 
Sbjct: 358 LRDIERLIKREIP 370


>gi|86144457|ref|ZP_01062789.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
 gi|85837356|gb|EAQ55468.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
          Length = 523

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 181/455 (39%), Positives = 261/455 (57%), Gaps = 10/455 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+   GY KP+PIQ K +P VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R    R L+L PTRELAAQV  +  KYG N  LT  ++ GG+    Q +KL
Sbjct: 61  EMLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G+DVL+ TPGR+LD +N+  +  + +EILV+DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 121 RKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +D+++ +++  + NP  I V+  +STA T+     + Y    KK A +   L
Sbjct: 181 NLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAPTV---EQSIYPVDKKKKAPMLAKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  ++F   K     L   LE+Q  +   IHGN  Q +R K L NFK G ++++
Sbjct: 238 IKDNDWRQVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NFD+PN +E+Y+HRIGRTGRAG  GKA +LV  +++  +  
Sbjct: 298 VATDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFG 357

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKID----IAQHNHARKNNPIPQKSTGFDRRKKNY 413
           IE+LI++ ++   L G       P  ++D      +     + +   Q+S    R  K  
Sbjct: 358 IERLIQQVLERRELEGFAPVNKLPESRLDSRPIKPKKPKKTREHSDGQRSGENARGHKPA 417

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
              K H+    S    K     + +D++S     +
Sbjct: 418 GKNKRHVAGNGSAPKRKPNSGNKASDSNSAAAGDD 452


>gi|322516252|ref|ZP_08069184.1| ATP-dependent RNA helicase DeaD [Streptococcus vestibularis ATCC
           49124]
 gi|322125316|gb|EFX96681.1| ATP-dependent RNA helicase DeaD [Streptococcus vestibularis ATCC
           49124]
          Length = 528

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 152/373 (40%), Positives = 224/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  +  AV+ AG+ KP+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L 
Sbjct: 61  DKIRT---EENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +NNIE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T   ++  F+    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMGYLSII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|270307613|ref|YP_003329671.1| hypothetical protein DhcVS_172 [Dehalococcoides sp. VS]
 gi|270153505|gb|ACZ61343.1| hypothetical protein DhcVS_172 [Dehalococcoides sp. VS]
          Length = 561

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 153/465 (32%), Positives = 241/465 (51%), Gaps = 21/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P V+  V   GY +PTPIQ + IP +++ HDV G+AQTGTGKTA++ LP++
Sbjct: 1   MSFESFNFAPAVMAGVRACGYQEPTPIQAQAIPPIMEGHDVIGLAQTGTGKTAAYALPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          RTL++ PTRELA Q++D+F   G+   +    + GG+  + Q ++L 
Sbjct: 61  QKMLSTPR--GRVRTLVIAPTRELACQISDSFRSLGQRARIRECSIYGGVNMDQQIRRLR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++  PGR+LDH  RG + +  +E L+IDEADRM DMGF P IQ+I   +    QT
Sbjct: 119 SGVDVVVACPGRLLDHIWRGTIDVCGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++K+++    NP  I+V T +  +      +     Q +     + +   
Sbjct: 179 LLFSATMPPEVRKLTQESQTNPVTIQVGTQAPASSVSHSVYPVKSHQKTPLLIEILK--- 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K+ +IF   K    NL   + K GF+  ++ GN+ Q  R  ++  F+    +++V
Sbjct: 236 -TVETKSVLIFARTKYGAENLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRRNFKILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + HV NFD+P+  E+Y HRIGRTGR  R G+A +LV   D   +  I
Sbjct: 295 ATDIAARGLDIDHISHVINFDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMVRDI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           ++L+   +  L            ++D   +   R +     +   F  R+   S   +  
Sbjct: 355 QRLLSSPIQRL------------RVDGFDYATTRNDGQHQSQRRDFAPRRGYSSGGYNRP 402

Query: 421 PLKESEKIS---KLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
            +  +E +      +  +      + GFR   P+   P+ R + N
Sbjct: 403 EMSVNEALQTDTPAEMPLSPARPYNAGFRPGRPSNSAPRFRREGN 447


>gi|218676102|ref|YP_002394921.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218324370|emb|CAV25741.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 523

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 181/455 (39%), Positives = 261/455 (57%), Gaps = 10/455 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+   GY KP+PIQ K +P VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R    R L+L PTRELAAQV  +  KYG N  LT  ++ GG+    Q +KL
Sbjct: 61  EMLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G+DVL+ TPGR+LD +N+  +  + +EILV+DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 121 RKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +D+++ +++  + NP  I V+  +STA T+     + Y    KK A +   L
Sbjct: 181 NLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAPTV---EQSIYPVDKKKKAPMLAKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  ++F   K     L   LE+Q  +   IHGN  Q +R K L NFK G ++++
Sbjct: 238 IKDNDWRQVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NFD+PN +E+Y+HRIGRTGRAG  GKA +LV  +++  +  
Sbjct: 298 VATDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFG 357

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKID----IAQHNHARKNNPIPQKSTGFDRRKKNY 413
           IE+LI++ ++   L G       P  ++D      +     + +   Q+S    R  K  
Sbjct: 358 IERLIQQVLERRELEGFAPVNKLPESRLDSRPIKPKKPKKTREHSDGQRSGENARGHKPA 417

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
              K H+    S    K     + +D++S     +
Sbjct: 418 GKNKRHVAGNGSAPKRKPNSGNKASDSNSAAAGDD 452


>gi|167568882|ref|ZP_02361756.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786]
          Length = 408

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 161/392 (41%), Positives = 234/392 (59%), Gaps = 9/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTFYAENRGARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPK 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAET+            ++     
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKID 386
           +  IE+LI++++  + + G     N   E I 
Sbjct: 358 LRDIERLIKREISQEVIAGFEPDPNAKPEPIQ 389


>gi|167561646|ref|ZP_02354562.1| putative ATP-dependent RNA helicase rhlE [Burkholderia oklahomensis
           EO147]
          Length = 395

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 161/392 (41%), Positives = 234/392 (59%), Gaps = 9/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   + R   R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHTFYAENRGARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPK 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAET+            ++     
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKID 386
           +  IE+LI++++  + + G     N   E I 
Sbjct: 358 LRDIERLIKREISQEVIAGFEPDPNAKPEPIQ 389


>gi|11602713|emb|CAC18543.1| translation initiation factor 4A-like protein [Echinococcus
           multilocularis]
          Length = 403

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 197/377 (52%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+ +P+ IQ + I  ++   DV   AQ+GTGKTA+  +    
Sbjct: 31  TFDSMNLREDLLRGIYAYGFERPSAIQQRAIKQIILGRDVIAQAQSGTGKTATLAIA--- 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    ++R  + LIL PTRELA Q+       G   N+      GG       KKL+ 
Sbjct: 88  SLQVLDIQLRDTQVLILSPTRELALQIQKVILVLGDFMNVQCHACYGGTNVGEDIKKLDY 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L    I++L++DEAD MLD GF   I ++   +P   Q +
Sbjct: 148 GQHIVSGTPGRVFDMIKRRNLRTRTIKLLILDEADEMLDKGFKEQIYDVYRYLPPGTQVV 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 208 LLSATMPHDILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFETLCDL--YD 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++    L   + K  F+V  +HG++ Q+ R +I+ NF+    ++++ 
Sbjct: 266 TLTVTQSVIFCNTRRKAEWLADKMCKSNFTVTVMHGDMVQKEREEIMRNFRSSESRVLIT 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+ +PN  E YIHRIGR+GR GR G A   V  EDI+ +  IE
Sbjct: 326 TDLLARGIDVQQVSMVINYGLPNNRELYIHRIGRSGRFGRKGVAINFVKNEDIRILRDIE 385

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  ++S L
Sbjct: 386 QYYSTQIDEMPMNVSDL 402


>gi|16117825|dbj|BAB69820.1| putative ATP-dependent RNA helicase [Streptococcus sobrinus]
          Length = 522

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 144/373 (38%), Positives = 226/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  ++ AV  AG+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELHLAEDILQAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++       + + L++ PTRELA Q  +   ++G+   + V  + GG   + Q K L 
Sbjct: 61  NKIDIDN---NVIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIDKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N+IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISHVPDERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T++ +            ++       L 
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTSDNV---EQFYIRVKEREKFDTMTRLI 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +G+    IHG++DQ  R++++ +FK   + ++V
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ GK+ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGKSVTFVSPNEMGYLSII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|304398629|ref|ZP_07380501.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304353840|gb|EFM18215.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 442

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 138/436 (31%), Positives = 226/436 (51%), Gaps = 14/436 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ A+ + G+ +PT IQ   IP  L+  DV G A TGTGKTA+++LP + 
Sbjct: 5   TFSELELDESLLQALQEKGFTRPTVIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LI+ PTRELA QVAD+  +  K+ +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILIVTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E LV+DEADRMLDMGF   I+ I +   + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLVLDEADRMLDMGFAQDIETIAAETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT   D ++  +E  L +P  +E +      + I+  +        K    L   L
Sbjct: 185 MLFSATLEGDNIRDFAERLLNDPVELEADPSRRERKKIQQWYYRADDLQHK--TKLLIHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  +   I+F  +++ +  L   L + G     + G + Q  R + +    EG + ++
Sbjct: 243 LKQPDVTRCIVFVRKRERLHELVSWLHEAGIRSSYLEGEMVQAKRNEAIKRLSEGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV HVFN+D+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDIAARGIDVEDVSHVFNYDMPRTADTYLHRIGRTGRAGRKGIAISLVEAHDFVLLGK 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           I + + + +     D   L P        +   A+      +K       KK   ++K  
Sbjct: 363 ITRYVNEPIKARVID--ELRPET------RAPSAKTTGKPSKKVLAKRAEKKASETEKPR 414

Query: 420 IPL--KESEKISKLQQ 433
           +    ++++ + K ++
Sbjct: 415 VKNRHRDAKNVGKRRK 430


>gi|302408591|ref|XP_003002130.1| ATP-dependent RNA helicase FAL1 [Verticillium albo-atrum VaMs.102]
 gi|261359051|gb|EEY21479.1| ATP-dependent RNA helicase FAL1 [Verticillium albo-atrum VaMs.102]
          Length = 401

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   GY  P+ +Q + I  V +  D    AQ+GTGKTA+F + ML 
Sbjct: 28  TFESMSLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQ 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++      +    L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 88  VIDTAVRESQA---LVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDY 144

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 145 GQHIVSGTPGRVADMIRRRDLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVV 204

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 205 VVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDL--YD 262

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG++ Q+ R  I+ +F++G  +++++
Sbjct: 263 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLIS 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 323 TDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIE 382

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 383 LYYSTQIDEMPMNVADL 399


>gi|254286224|ref|ZP_04961183.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae AM-19226]
 gi|150423639|gb|EDN15581.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae AM-19226]
          Length = 438

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 141/432 (32%), Positives = 211/432 (48%), Gaps = 11/432 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD GL P+V+  +   G+V  TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                          PR +I+ PTRELA Q+ ++ E    +  L  AL  GG  ++ Q  
Sbjct: 70  HLLTTSAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G D+LI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +  L    + T   +     F       E        +T        +   ++    L Q
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMNN-PEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L      V  + G++ Q+ R +IL  F +G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE  IE  +   + D    L+ L  PL      Q    R N    + S     RK   
Sbjct: 369 PAIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQR--RTNTAGSRNSNNGGNRKPQQ 426

Query: 414 SSQKSHIPLKES 425
              ++  P KE+
Sbjct: 427 RRPRAPRPKKEA 438


>gi|312864570|ref|ZP_07724801.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus downei
           F0415]
 gi|311099697|gb|EFQ57910.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus downei
           F0415]
          Length = 521

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 143/373 (38%), Positives = 225/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  ++ AV  AG+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELHLAEDILQAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +        + + L++ PTRELA Q  +   ++G+   + V  + GG   + Q K L 
Sbjct: 61  NKIAIDN---NVIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIDKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISHVPDERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T++ +            ++       L 
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTSDNV---EQFYIRVKEREKFDTMTRLI 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +G+    IHG++DQ  R++++ +FK   + ++V
Sbjct: 235 DIEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ GK+ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGKSVTFVSPNEMGYLSII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|301093191|ref|XP_002997444.1| ATP-dependent RNA helicase eIF4A, putative [Phytophthora infestans
           T30-4]
 gi|262110700|gb|EEY68752.1| ATP-dependent RNA helicase eIF4A, putative [Phytophthora infestans
           T30-4]
          Length = 411

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+ KP+ IQ + +  +L  HD    AQ+GTGKTA+F + +L 
Sbjct: 39  TFDGMDLREDLLRGIYAYGFEKPSAIQQRAVKPILLGHDCIAQAQSGTGKTATFAVSILQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++      +    LIL PTRELA Q+       G   ++ V   +GG       + L++
Sbjct: 99  KIDINLKETQA---LILAPTRELAQQIVKVVVAIGDYMSVQVHACVGGTAVRDDIRTLQQ 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D  NR  L  + +++ V+DEAD ML  GF   I  +   +P   Q  
Sbjct: 156 GVHIVVGTPGRVGDMINRRALRTDEVKMFVLDEADEMLSRGFKDQIYEVFRFLPEKVQVA 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  ++ +V+  F++ P RI V     T E I+  F+A   +  K   L       
Sbjct: 216 LFSATMPLDVLEVTHRFMREPIRILVKRDELTLEGIKQFFIAIDREEWKFDTLCDL--YE 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   II+CN ++ V  L   ++ + F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 274 TLTITQAIIYCNTRRKVDWLTEKMQSKDFTVSAMHGDMEQRERDIIMREFRSGSSRVLIT 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   +   D++++  IE
Sbjct: 334 TDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTHNDVRYLRDIE 393

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 394 QFYNTQIDEMPMNVADL 410


>gi|212636923|ref|YP_002313448.1| DEAD box family ATP-dependent RNA helicase [Shewanella
           piezotolerans WP3]
 gi|212558407|gb|ACJ30861.1| ATP-dependent RNA helicase, DEAD box family [Shewanella
           piezotolerans WP3]
          Length = 432

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 155/440 (35%), Positives = 238/440 (54%), Gaps = 16/440 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P+++ A+ + GY K TPIQ + IP V +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFAPEILRAISECGYQKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFSLPIL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +    +  +       IL PTRELAAQ+ADN   Y K   + V  ++GG+  ++Q  K
Sbjct: 61  QKMLDNPSATQRSNARALILTPTRELAAQIADNINDYAKYLEVNVVTIVGGVKMDSQATK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RGAD++I TPGR+L+H     L ++N++ LV+DEADRMLDMGF   IQ I   V   R
Sbjct: 121 LKRGADIIIATPGRLLEHIVACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNSKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT +  ++K++   +  P  I  +  ++TA+T+         +  ++       
Sbjct: 181 QNLMFSATFSAPVKKLASEMMVKPNVITADKQNTTADTVSQVIYPVEQRRKRELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F   +     L   L   G     +HG   Q SR + L  FKEG +++
Sbjct: 239 -IGKKNWQQVLVFTATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREFKEGKMRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDI D+ +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLA 357

Query: 359 AIEKLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            IEKLI +K+  +       G    L   L+          R +N   Q        +KN
Sbjct: 358 DIEKLIGQKLRRVTVPGYEVGSRDLLIKQLQTRRSFAKKQQRADNAGAQVIA-----EKN 412

Query: 413 YSSQKSHIPLKESEKISKLQ 432
              ++  +      KI K++
Sbjct: 413 MQGRRVKVKNASPAKIKKIK 432


>gi|304387310|ref|ZP_07369503.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis ATCC 13091]
 gi|304338693|gb|EFM04810.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis ATCC 13091]
          Length = 462

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 154/457 (33%), Positives = 231/457 (50%), Gaps = 12/457 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QKLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    ++P+ IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK I +K+  L  +        +             +       G  +  K     K+
Sbjct: 360 KIEKYINRKLPELTIEGMEPTRKRKPAGGKPKGKGGWGDRKAGGQRGDHKPGKEGFGGKT 419

Query: 419 HIP--LKESEKISKLQQ-----DIQENDADSLGFRGN 448
                 KES K    ++       +    DS   RG 
Sbjct: 420 RGEGFKKESFKKDGFKKTGEGFKGKRKAGDSFAGRGE 456


>gi|170725457|ref|YP_001759483.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169810804|gb|ACA85388.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 432

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 155/436 (35%), Positives = 246/436 (56%), Gaps = 8/436 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P+++ A+ + GY K TP+Q + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFAPEILRAISECGYQKMTPVQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +    +  +   T   IL PTRELA+Q+ADN   Y K+  ++V  + GG+  E Q +K
Sbjct: 61  QKMIDKPSETQRSNTRALILTPTRELASQIADNINDYSKHMQVSVLTIYGGVKLETQAQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++RG D+++ TPGR+L+H     L ++N++ +V+DEADRMLDMGF+  IQ +   V    
Sbjct: 121 IKRGVDIIVATPGRLLEHIQACNLNLSNVDFMVLDEADRMLDMGFVSDIQKVLQAVNKNS 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT +  ++K++ +FL  PK I V+  ++TA+T+         +  ++       
Sbjct: 181 QKMLFSATFSSSVKKLANDFLDKPKLISVDKQNTTADTVSQVVYPVEQRRKRELVSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   K  +IF   +     L   L   G     +HG   Q +R + L  FKEG +++
Sbjct: 239 -IGKKNWKQVLIFTATRDAADKLVKELNLDGIPSSVVHGEKAQGNRRRALREFKEGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDI D+ +V N+D+P  AE+Y+HRIGRTGRAG+ G A +LV++E+ + + 
Sbjct: 298 LVATEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEERTLA 357

Query: 359 AIEKLIEKKVDWLN--GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            IEKLI KK+  +   G        L K    + + A+K N     S      ++N   +
Sbjct: 358 DIEKLIGKKLPRITIAGYEVGSRDLLIKHLQTRRSFAKKQNRQDNVSEQVIG-ERNMQGR 416

Query: 417 KSHIPLKESEKISKLQ 432
           +  +    + KI K +
Sbjct: 417 RVKVKNSSNAKIKKSK 432


>gi|52078994|ref|YP_077785.1| ATP-dependent RNA helicase YdbR [Bacillus licheniformis ATCC 14580]
 gi|52784366|ref|YP_090195.1| YdbR [Bacillus licheniformis ATCC 14580]
 gi|81691189|sp|Q65N62|CSHA_BACLD RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|52002205|gb|AAU22147.1| probable ATP-dependent RNA helicase YdbR [Bacillus licheniformis
           ATCC 14580]
 gi|52346868|gb|AAU39502.1| YdbR [Bacillus licheniformis ATCC 14580]
          Length = 487

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 143/373 (38%), Positives = 218/373 (58%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  LS  +  A+   G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F +P++
Sbjct: 3   ITFQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLV 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + +++ PTRELA QV++   K G++    V  + GG     Q + L+
Sbjct: 63  EKINP---ESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+LDH NR  + +  +  +V+DEAD ML+MGFI  I++I S VP   QT
Sbjct: 120 KNPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +++++E F+ NP+ ++V     T   I+         + +K       L 
Sbjct: 180 LLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQ---FYLEVHERKKFDTLTRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM  L  FK+G I+++V
Sbjct: 237 DIQSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFDVP   E+Y+HRIGRTGRAG+ G A T +   +   + AI
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAI 356

Query: 361 EKLIEKKVDWLNG 373
           E+  ++K+D +  
Sbjct: 357 EQTTKRKMDRMKA 369


>gi|150401787|ref|YP_001325553.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           aeolicus Nankai-3]
 gi|150014490|gb|ABR56941.1| DEAD/DEAH box helicase domain protein [Methanococcus aeolicus
           Nankai-3]
          Length = 529

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 141/383 (36%), Positives = 222/383 (57%), Gaps = 9/383 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F +LGL    V A+   G+  PTPIQ K IP++L   +DV G AQTGTGKTA+F LP++
Sbjct: 5   EFLELGLCENTVEALEKKGFKHPTPIQKKAIPMLLDGDYDVVGQAQTGTGKTAAFGLPII 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE     V+     IL PTRELA QV+D       + NL +  + GG P + Q ++L+
Sbjct: 65  EKLENTDKEVQAI---ILTPTRELALQVSDELNSLRGSKNLKIVAMYGGQPIQEQIRQLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G +V++ TPGRI+DH  RG L ++ I+  V+DEAD MLDMGFI  I++I       ++ 
Sbjct: 122 KGVNVVVGTPGRIMDHLKRGTLRLHTIKYFVLDEADEMLDMGFIDDIEDILRYTNPDKKM 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+   +  +++ ++   K I V + + T + +E  +    +    +       + 
Sbjct: 182 LLFSATLPRRIMGLAKRYMGKYKVISVKSENLTTDMVEQVYYEVRSSDKFEALCRVIDIN 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +     GI+FC  +  V ++ + L  +G+    +HG+I Q  R KIL+ FK    +++V
Sbjct: 242 KEFY---GIVFCKTRAEVNDIANKLSAKGYFAEGLHGDIAQNQREKILNRFKAKRTKILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV N+D+P   E Y+HRIGRTGRAG+ G A T V  ++ + +  I
Sbjct: 299 ATDVAARGIDVTDLTHVVNYDIPQNPEAYVHRIGRTGRAGKRGTAITFVQPDEFRRLKDI 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           ++  + ++     D+ S+    E
Sbjct: 359 KRTAKTEI--AKKDVPSIEEIKE 379


>gi|160875166|ref|YP_001554482.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|160860688|gb|ABX49222.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315267360|gb|ADT94213.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 467

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 157/432 (36%), Positives = 240/432 (55%), Gaps = 6/432 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F+ LGLS  ++ A+ + GY +PTPIQ K IP++ +  ++   AQTGTGKTASFVLP+ 
Sbjct: 1   MPFSKLGLSDPILRAITELGYSQPTPIQEKAIPVIFKGKNLLAGAQTGTGKTASFVLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +  + R +  R LIL PTRELA QV DN  KY K   LT   + GG+    Q ++L
Sbjct: 61  QMFADMPKIRAKRVRALILTPTRELAVQVEDNIAKYAKYLPLTSMAMYGGVDAAPQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + I +LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDEISVLVLDEADRMLDMGFIEDINKIIERLPTERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++ +++  ++NP  IE+   S+ A  I+   +                 
Sbjct: 181 NLLFSATLSKQVRFLAKTAVENPVEIEIARDSANAPQIDQWLITVDKDKKSALLSKL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  +IF   K+    L   LEK+G +  AIH    Q  R ++L +FK G ++ +
Sbjct: 238 ITEQAWEQALIFIQTKQGAAKLVSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGKLRFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +A+RG+DI  +  V N+D+P+ A++YIHRIGRTGRAG  G+A + V+K+D +++ A
Sbjct: 298 VATGVASRGIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGACGEAISFVSKDDFRNLCA 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE+ +   +    + G + +   P+  +D    N   K            R  K  S + 
Sbjct: 358 IERRLGHIIVRKEIEGFVPNKEVPVSILDFVPKNTTPKTFKARAPDARTSRPAKEGSFET 417

Query: 418 SHIPLKESEKIS 429
           +H     S K  
Sbjct: 418 AHAKKHRSAKSK 429


>gi|310644788|ref|YP_003949547.1| dead/deah box helicase domain protein [Paenibacillus polymyxa SC2]
 gi|309249739|gb|ADO59306.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
          Length = 481

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 145/393 (36%), Positives = 225/393 (57%), Gaps = 12/393 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  LS ++V A+   GY  PT IQ + IP+ L++ D+   +QTG+GKTA++ +P+  +
Sbjct: 6   FADYPLSEEIVRALNSLGYETPTEIQTEVIPVALEKKDLVAKSQTGSGKTAAYGIPLCEL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    +   P+ LIL PTRELA QV ++    G+   +    L G  PF  Q  +L++ 
Sbjct: 66  VDWNENK---PQALILTPTRELALQVTEDITNIGRFKRIKATPLYGKHPFHIQKAELKQR 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V + TPGR+LDH  RG L +N I  LVIDEAD ML+MGFI  +Q+I   +P  R T+L
Sbjct: 123 THVAVGTPGRVLDHIERGTLSLNRIAYLVIDEADEMLNMGFIEQVQSIIQALPNDRVTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT  +++ K+S  ++ +P  IE+     T  TI+H   +           L Q L   
Sbjct: 183 FSATFPEDVAKLSRKYMNDPVEIEIKATGVTTATIDH---SLIQVREADKLALLQDLLVV 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  +++V  L  +L    +    IHG ++Q  R ++++ F+ G  + ++A+
Sbjct: 240 ENPDSCIIFCRTQEHVDTLFRALADLEYPCDRIHGGMEQDERFEVMNAFRRGQFRYLIAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG+ GKA TL+  +D K +  IE 
Sbjct: 300 DVAARGIDITNITHVINYDIPLEKESYVHRTGRTGRAGKTGKAITLITPKDSKRLADIEA 359

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
            I   +  +        P  E +D+ + +  RK
Sbjct: 360 YIGFAIPQVKA------PSEEAVDLHREDFERK 386


>gi|221640283|ref|YP_002526545.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides KD131]
 gi|332559285|ref|ZP_08413607.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
           WS8N]
 gi|221161064|gb|ACM02044.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
           KD131]
 gi|332276997|gb|EGJ22312.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
           WS8N]
          Length = 453

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 158/450 (35%), Positives = 241/450 (53%), Gaps = 12/450 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGLS +++  +  A + +PTPIQ++ IP V+Q  D+ G+AQTGTGKT +F LP+L 
Sbjct: 3   DFSTLGLSERLMQGLAKAQFTQPTPIQVEAIPYVMQGRDLMGLAQTGTGKTLAFGLPLLH 62

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                      R  R LIL PTREL  Q+A N E + K   + V  + GG     Q ++L
Sbjct: 63  RLLGVGHPPPPRTIRALILAPTRELVTQIATNLELFTKGTPVKVVTITGGASINRQTERL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGAD+++ TPGR++D  +R  +++++   LV+DEAD+MLDMGFI  ++ I   +P  RQ
Sbjct: 123 ARGADIMVATPGRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPLKRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   +++++  +L+ P +++V  P    E I      T      K     +  
Sbjct: 183 TLLFSATMPKLIEELAHTYLREPVKVQVAPPGKPVEKIAQGVHFTPQGDKAKL---LESY 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   L   GF   +IHGN  Q  R + L+ F++G++ ++
Sbjct: 240 LQKHPGEQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGSLDVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V HV+N+D+PN  ENY+HRIGRT RAG  G A   VA  +++   A
Sbjct: 300 VATDVAARGIDIPGVRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVAPAEMEEFRA 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ--K 417
           +EKL+++ +  + G      P    I  A     +K     +  TG   + K  +    K
Sbjct: 360 VEKLLKQPIPVIGG-----APWAADIVAAAPRPGQKPRQGGRPKTGAKPQGKPQAKAQPK 414

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRG 447
                K   +  +       + A     RG
Sbjct: 415 PQGAAKAHPRAGRPAGAPGGHAAPKRAARG 444


>gi|171681521|ref|XP_001905704.1| hypothetical protein [Podospora anserina S mat+]
 gi|170940719|emb|CAP65947.1| unnamed protein product [Podospora anserina S mat+]
          Length = 540

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 186/377 (49%), Gaps = 7/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F D GL   ++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 31  MEFEDFGLKRSLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVIPAL 90

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     ++   + LIL PTRELA Q +   +  GK+  + V +  GG        +L+
Sbjct: 91  QKI---NPKINKIQCLILVPTRELAMQTSQVCKTLGKHLGVNVMVTTGGTGLRDDIVRLQ 147

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +    ++   + ++DEAD++L   F P I+ +    P  RQ 
Sbjct: 148 DPVHIVVGTPGRILDLAGKQVADLSECPMFIMDEADKLLSAEFTPVIEQLLQFHPKDRQV 207

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F     +           T+            K+       L 
Sbjct: 208 MLFSATFPISVKD----FSDKNMKEPYEINLMDELTLRGITQYYAYVEEKQKVHCLNTLF 263

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 264 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMQQHARNRVFHDFRNGVCRNLV 323

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 324 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNI 383

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +   +  
Sbjct: 384 ERDLGTEIQPIPATIDK 400


>gi|91206542|sp|Q4PHU9|DBP2_USTMA RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 552

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 129/379 (34%), Positives = 205/379 (54%), Gaps = 2/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    ++  +   G+ +P+ IQ +  P+ L   D+  IA+TG+GKT  F LP + 
Sbjct: 131 SFDEAGFPDYILSEIKKMGFSEPSAIQSQAWPMALSGRDLVAIAETGSGKTIGFALPAMV 190

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  LIL PTRELA Q+     ++G +  L    + GG+P   Q + L
Sbjct: 191 HINAQPLLKPGDGPIALILAPTRELANQIQVECNRFGGSSRLRTCAVYGGVPKGPQIRDL 250

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA++ I TPGR++D  + GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 251 QRGAEICIATPGRLIDMVDAGKTNLRRVTYLVMDEADRMLDMGFEPQIRKILQQIRPDRQ 310

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT   E+Q+++ +FL N  ++ + +    A       +    ++ KK  L+  L 
Sbjct: 311 TLMFSATWPKEVQRLAGDFLNNYAQVNIGSTELAANHNVKQIIEVCTEFEKKGKLIGHLE 370

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIF + K+   +L   L + G+   AIHG+  Q+ R  +L+ FK G   +M
Sbjct: 371 TISAENGKVIIFTSTKRVADDLTKFLRQDGWPALAIHGDKQQQERDWVLAEFKSGRSPIM 430

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +A+RGLD+ D+ +V N+D P   E+Y+H+IGRTGRAGR G A+T    E+ K    
Sbjct: 431 VATAVASRGLDVKDISYVINYDFPTNTEDYVHQIGRTGRAGRTGTAYTYFTPENSKSARE 490

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +  ++ +    +  ++  +
Sbjct: 491 LIGILREAKQEIPREIEEM 509


>gi|77464394|ref|YP_353898.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides 2.4.1]
 gi|77388812|gb|ABA79997.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides 2.4.1]
          Length = 461

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 158/450 (35%), Positives = 241/450 (53%), Gaps = 12/450 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGLS +++  +  A + +PTPIQ++ IP V+Q  D+ G+AQTGTGKT +F LP+L 
Sbjct: 11  DFSTLGLSERLMQGLAKAQFTQPTPIQVEAIPYVMQGRDLMGLAQTGTGKTLAFGLPLLH 70

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                      R  R LIL PTREL  Q+A N E + K   + V  + GG     Q ++L
Sbjct: 71  RLLGVGHPPPPRTIRALILAPTRELVTQIATNLELFTKGTPVKVVTITGGASINRQTERL 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGAD+++ TPGR++D  +R  +++++   LV+DEAD+MLDMGFI  ++ I   +P  RQ
Sbjct: 131 ARGADIMVATPGRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPLKRQ 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   +++++  +L+ P +++V  P    E I      T      K     +  
Sbjct: 191 TLLFSATMPKLIEELAHTYLREPVKVQVAPPGKPVEKIAQGVHFTPQGDKAKL---LESY 247

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   L   GF   +IHGN  Q  R + L+ F++G++ ++
Sbjct: 248 LQKHPGEQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGSLDVL 307

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V HV+N+D+PN  ENY+HRIGRT RAG  G A   VA  +++   A
Sbjct: 308 VATDVAARGIDIPGVRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVAPAEMEEFRA 367

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ--K 417
           +EKL+++ +  + G      P    I  A     +K     +  TG   + K  +    K
Sbjct: 368 VEKLLKQPIPVIGG-----APWAADIVAAAPRPGQKPRQGGRPKTGAKPQGKPQAKAQPK 422

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRG 447
                K   +  +       + A     RG
Sbjct: 423 PQGAAKAHPRAGRPAGAPGGHAAPKRAARG 452


>gi|323507844|emb|CBQ67715.1| probable RNA helicase dbp2 (DEAD box protein) [Sporisorium
           reilianum]
          Length = 536

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 127/379 (33%), Positives = 205/379 (54%), Gaps = 2/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    ++  +   G+ +P+ IQ +  P+ L   D+  IA+TG+GKT  F LP + 
Sbjct: 114 SFDEAGFPEYILSEIKKMGFSEPSAIQSQAWPMALSGRDLVAIAETGSGKTIGFALPAMV 173

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  LIL PTRELA Q+     ++G +  L    + GG+P   Q + L
Sbjct: 174 HINAQPLLKPGDGPIALILAPTRELANQIQVECNRFGGSSRLRTCAVYGGVPKGPQIRDL 233

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA++ I TPGR++D  + GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 234 QRGAEICIATPGRLIDMVDAGKTNLRRVTYLVMDEADRMLDMGFEPQIRKILQQIRPDRQ 293

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT   E+Q+++ +FL N  ++ + +    A       +    ++ K+  L+  L 
Sbjct: 294 TLMFSATWPKEVQRLAGDFLNNFAQVNIGSTELAANHNVKQIIEVCTEFEKRGKLIGHLE 353

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIF + K+   ++   L + G+   AIHG+  Q+ R  +L+ FK G   +M
Sbjct: 354 LISADNGKVIIFTSTKRVADDITKFLRQDGWPALAIHGDKQQQERDWVLAEFKSGRSPIM 413

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +A+RGLD+ D+ +V N+D P   E+Y+H+IGRTGRAGR G A+T    E+ K    
Sbjct: 414 VATAVASRGLDVKDISYVINYDFPTNTEDYVHQIGRTGRAGRTGTAYTYFTPENSKSARE 473

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +  ++ +    +  ++  +
Sbjct: 474 LVGILREAKQEIPREIEEM 492


>gi|327294865|ref|XP_003232128.1| eukaryotic initiation factor 4A-12 [Trichophyton rubrum CBS 118892]
 gi|326466073|gb|EGD91526.1| eukaryotic initiation factor 4A-12 [Trichophyton rubrum CBS 118892]
          Length = 399

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L 
Sbjct: 26  TFDDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++      +    L+L PTRELA Q+       G   N+     IGG       +KLE 
Sbjct: 86  VIDTVLRESQA---LVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEH 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I +I   +P   Q +
Sbjct: 143 GQHVVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDIYRYLPPATQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 203 VVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDL--YD 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++++
Sbjct: 261 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIS 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 321 TDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 381 LYYSTQIDEMPMNVADL 397


>gi|297620744|ref|YP_003708881.1| ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU 86-1044]
 gi|297376045|gb|ADI37875.1| ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU 86-1044]
          Length = 439

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 156/448 (34%), Positives = 243/448 (54%), Gaps = 11/448 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L   ++ A+  AGY  PT IQ K IP  ++  D+   AQTG+GKTA+F+LP L
Sbjct: 1   MTFDALNLHSDLLKALNAAGYKSPTEIQCKAIPKAVKGFDLRASAQTGSGKTAAFLLPAL 60

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKK 118
                   +  + PR LIL PTRELA Q+A   +KY K  N   ++ I  G+P+  Q +K
Sbjct: 61  HHCVANPRKPTVGPRVLILSPTRELAMQIATQADKYSKFLNRVKSVCISGGVPYHVQQRK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R  ++LI TPGR++D+ N+  + ++ IEILV+DEADRMLDMGFI  ++ I +  P +R
Sbjct: 121 LRRPYEILIATPGRLIDYINQKAINLSAIEILVLDEADRMLDMGFIEPVEKIAAATPSSR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM   +  +S   L  P  I +++  +  E I            K    L + 
Sbjct: 181 QTLLFSATMQGSVLNLSNRLLNEPMDIVIHSEKTKHENITQKLHYVDGLQHK--NQLLEH 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + + D +K+ I+F + K++   L   L  +G    A+HG++ QR R + ++  + G I++
Sbjct: 239 ILNDDVVKHAIVFTSTKRHASQLVFELHDKGLLAGALHGDMSQRQRSRTIAQLRTGKIKV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ ++ HV NFD+P   E+Y+HRIGRTGRAG  G A +  + +D   + 
Sbjct: 299 LVATDVAARGIDVQNITHVINFDLPRNVEDYVHRIGRTGRAGAAGTALSFASGKDTSLVK 358

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IE+   + +D     ++ L P   K +     H  K    P        R K  S+ ++
Sbjct: 359 KIEEYTGQPIDV--AVVAGLEPKPIKTE-----HKNKPAKRPANKWKGKHRHKKPSAGRA 411

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFR 446
               ++ E+ ++     +     +   R
Sbjct: 412 FKGSQQQERPTQTSPSWKGKRGRTTSHR 439


>gi|149278660|ref|ZP_01884796.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
 gi|149230655|gb|EDM36038.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
          Length = 435

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 165/424 (38%), Positives = 243/424 (57%), Gaps = 17/424 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY +PTPIQ ++IP +L   D+ G AQTGTGKTA+F +PML
Sbjct: 1   MLFEELNLIEPILKALQTEGYTQPTPIQEQSIPTILTSRDLLGCAQTGTGKTAAFAIPML 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L K     + PR +   +L PTRELA Q+ ++F+ YG+N +L   ++ GG+  +AQ  
Sbjct: 61  QLLNKEHQNAKGPRPIRALVLTPTRELAIQIEESFKAYGRNLSLRHLVIFGGVGQKAQTD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+LI TPGR+LD  N+G + + +IEI V+DEADRMLDMGFI  ++   + +P  
Sbjct: 121 ALHRGVDILIATPGRLLDLMNQGFINLKDIEIFVLDEADRMLDMGFIHDVKKTIAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL FSATM  E+QK++   L +P ++EV   SSTAE IE           K       
Sbjct: 181 RQTLFFSATMPPEIQKLANTILVDPLKVEVTPVSSTAEKIEQMIYFVEKGDKKNL---LI 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +    T++  ++F   K     +   L K G    AIHGN  Q +R + L+NFK  T +
Sbjct: 238 HILQDKTIQTALVFTRTKHGADRVVKDLIKVGVKAEAIHGNKSQNARQRALTNFKAKTTR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HV N+++PN  E Y+HRIGRTGRAG  G +F+    E+ + +
Sbjct: 298 ILVATDIAARGIDVDELTHVINYELPNIPETYVHRIGRTGRAGNSGISFSFCDGEEKEFL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           D IEKLI  K+           P  E    A    +  ++    KS G  +  +    ++
Sbjct: 358 DDIEKLIALKI-----------PVQEDHPYAMSWQSLMSSAAAAKSKGKSKPSRGARPER 406

Query: 418 SHIP 421
           +   
Sbjct: 407 TERQ 410


>gi|126463236|ref|YP_001044350.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126104900|gb|ABN77578.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 461

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 158/450 (35%), Positives = 241/450 (53%), Gaps = 12/450 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGLS +++  +  A + +PTPIQ++ IP V+Q  D+ G+AQTGTGKT +F LP+L 
Sbjct: 11  DFSTLGLSERLMQGLAKAQFTQPTPIQVEAIPYVMQGRDLMGLAQTGTGKTLAFGLPLLH 70

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                      R  R LIL PTREL  Q+A N E + K   + V  + GG     Q ++L
Sbjct: 71  RLLGVGHPPPPRTIRALILAPTRELVTQIATNLELFTKGTPVKVVTITGGASINRQTERL 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGAD+++ TPGR++D  +R  +++++   LV+DEAD+MLDMGFI  ++ I   +P  RQ
Sbjct: 131 ARGADIMVATPGRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPLKRQ 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   +++++  +L+ P +++V  P    E I      T      K     +  
Sbjct: 191 TLLFSATMPKLIEELAHTYLREPVKVQVAPPGKPVEKIAQGVHFTPQGDKAKL---LESY 247

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   L   GF   +IHGN  Q  R + L+ F++G++ ++
Sbjct: 248 LQKHPREQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGSLDVL 307

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V HV+N+D+PN  ENY+HRIGRT RAG  G A   VA  +++   A
Sbjct: 308 VATDVAARGIDIPGVRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVAPAEMEEFRA 367

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ--K 417
           +EKL+++ +  + G      P    I  A     +K     +  TG   + K  +    K
Sbjct: 368 VEKLLKQPIPVIGG-----APWAADIVAAAPRPGQKPRQGGRPKTGAKPQGKPQAKAQPK 422

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRG 447
                K   +  +       + A     RG
Sbjct: 423 PQGAAKAHPRAGRPAGAPGGHAAPKRAARG 452


>gi|260774297|ref|ZP_05883212.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14]
 gi|260611258|gb|EEX36462.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14]
          Length = 633

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 152/463 (32%), Positives = 238/463 (51%), Gaps = 35/463 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+ + G+V PTPIQ   IPL+L   D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLALNSTLLSALNEMGFVTPTPIQSAAIPLLLAGRDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L+  + +   P+ +++ PTRELA QVA   +  GKN      L I  G     Q + L
Sbjct: 66  NKLDLTQYK---PQAIVMAPTRELAIQVAAEIKTLGKNIKGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR+ D   R +L ++     V+DEAD ML MGF+  +  I    P T Q
Sbjct: 123 KSGAHIIVGTPGRVKDLITRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQSPETAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++ + + FL++P R++V   + T   +E  +         +        
Sbjct: 183 RVLFSATMPPIVKDIVDRFLRDPARVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLET 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 243 EET---DASIVFVRTRQDTERLADWLIARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRINHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE++    ++ +        P  +K+  ++                         + K H
Sbjct: 360 IERVTRTSMEEIQ------LPHRDKVAESRLTQL----------------GLELEADKDH 397

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
             L++  ++ +  Q   E DA +L       A +L + +GK  
Sbjct: 398 AALEKFAELVEKLQASLEVDATTLA------AILLKRQQGKRP 434


>gi|238925630|ref|YP_002939147.1| DEAD/DEAH box helicase-like protein [Eubacterium rectale ATCC
           33656]
 gi|238877306|gb|ACR77013.1| DEAD/DEAH box helicase-like protein [Eubacterium rectale ATCC
           33656]
 gi|291524137|emb|CBK89724.1| Superfamily II DNA and RNA helicases [Eubacterium rectale DSM
           17629]
 gi|291527820|emb|CBK93406.1| Superfamily II DNA and RNA helicases [Eubacterium rectale M104/1]
          Length = 530

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 134/367 (36%), Positives = 209/367 (56%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L+PK++  + D G+ + TPIQ + IP VL   DV G AQTGTGKTA+F +P+L  
Sbjct: 6   FDELELNPKILRGIKDMGFEEATPIQAQGIPAVLSGRDVIGQAQTGTGKTAAFGIPVLES 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    + ++    IL PTRELA QVAD   K  K  +    L +  G     Q K L+ 
Sbjct: 66  VDASSHKTQVI---ILSPTRELAIQVADEIRKLAKYMHGVKVLPVYGGQDISRQIKALKG 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR++DH  R  +  ++++ +V+DEAD ML+MGF   I+ +   +P   QT+
Sbjct: 123 GVQIIIGTPGRLMDHLRRKTIRPDHVKTIVLDEADEMLNMGFREDIETVLEYLPQEHQTV 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   + +++  +  +              T+ +     Y    K    +   L  
Sbjct: 183 LFSATMPKPILEITRKYQHDAI---NIKIVKKELTVANIDQYYYDVKRKDKIDVLTRLLD 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  ++FCN KK V  L + L  +G+S   +HG++ Q  R +++ NF+ G   +++A
Sbjct: 240 YYNPKLSLVFCNTKKMVDELAYELCGRGYSAEGLHGDMKQVQRDRVMKNFRNGKTDILIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR GKAF+ V  +++  +  I+
Sbjct: 300 TDVAARGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGRCGKAFSFVKGKEVYKLKDIQ 359

Query: 362 KLIEKKV 368
           +  + K+
Sbjct: 360 RYCKTKI 366


>gi|154308886|ref|XP_001553778.1| eukaryotic initiation factor 4A-12 [Botryotinia fuckeliana B05.10]
 gi|160385734|sp|A6S4N4|FAL1_BOTFB RecName: Full=ATP-dependent RNA helicase fal1
 gi|150852597|gb|EDN27789.1| eukaryotic initiation factor 4A-12 [Botryotinia fuckeliana B05.10]
          Length = 399

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 203/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + ML 
Sbjct: 26  TFQDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 86  VIDTA---VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDY 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 143 GQHIVSGTPGRVADMIRRRNLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 203 VVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDL--YD 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++++
Sbjct: 261 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIS 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 321 TDVWARGIDVQQVSLVINYDLPVNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 381 LYYSTQIDEMPMNVADL 397


>gi|323140806|ref|ZP_08075722.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium sp.
           YIT 12067]
 gi|322414722|gb|EFY05525.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium sp.
           YIT 12067]
          Length = 529

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 140/368 (38%), Positives = 217/368 (58%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L  K+V A+ D G+ +P+PIQ  TIPLVL+ +DV G AQTGTGKTA+F +P++  
Sbjct: 8   FGSLELDKKIVTALTDMGFEEPSPIQAATIPLVLEGNDVIGQAQTGTGKTAAFGIPLVQ- 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                   +  + LI+ PTRELA QVA+   K G+   +    + GG P E Q + L   
Sbjct: 67  ---AITDFKHIQALIMTPTRELAIQVAEEVGKIGRTRRVRALPVYGGQPIERQIRALRNN 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++I TPGR++DH NRG + +++I+ LV+DEAD MLDMGF+  I+ I   +P  RQTLL
Sbjct: 124 VQIVIGTPGRLIDHINRGTIRLDHIKFLVLDEADEMLDMGFVDDIEEIMRSLPVERQTLL 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +  +++ +++ P        + + E +    +  Y   +K        L   
Sbjct: 184 FSATMPRPILSLTKKYMKAP-----KNVTISKEELTVPLIEQYYFETKDKIEGLCRLLDA 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     IIFC  KK V +L  +L  +G+    +HG++ Q  R +++  F+EG + +++A+
Sbjct: 239 EIDGKLIIFCRTKKGVDDLSIALSSRGYMAEGLHGDLSQNQRDRVMKKFREGAVDVLIAT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+D+ ++ HV NFD+P   E+Y+HRIGRTGRAG  G A T +   + + +  IE+
Sbjct: 299 DVAARGIDVDNITHVINFDIPQDPESYVHRIGRTGRAGNTGVAMTFITPREFRQLKLIER 358

Query: 363 LIEKKVDW 370
            ++ K+  
Sbjct: 359 TVKTKIQR 366


>gi|168178014|ref|ZP_02612678.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum NCTC 2916]
 gi|182671239|gb|EDT83213.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum NCTC 2916]
          Length = 425

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 169/425 (39%), Positives = 256/425 (60%), Gaps = 11/425 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   +  A+ + GY K TPIQ K+IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L K +   + P+ +   +L PTRELA Q+ ++FE YGK  NL  A++ GG+    Q K
Sbjct: 61  QNLSKDKKANKNPKPIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+LI TPGR+LD FN+  + + NIE  V+DEADRMLDMG I  ++ I S +P  
Sbjct: 121 VLREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKI 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  E+ K+ ++ +++P R+EV   SST +TI       Y    K+   L +
Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTI---TQEVYHVRKKQKRSLLK 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++++ ++F   K+    +   L + G    AIHGN  Q +R + L+NFKEG I+
Sbjct: 238 HLLRDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HVFN+++P+  E Y+HRIGRTGRAG  G A +    E+ K +
Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357

Query: 358 DAIEKLIEKKVDWL---NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS--TGFDRRKKN 412
            AIEKLI K++  +      +  +N    + +  ++N  +K +   Q       + R+KN
Sbjct: 358 KAIEKLINKEIPVVEDHPYKIRHINEDEVRKENTKNNSNKKPSSKRQGGNWRYSNNRRKN 417

Query: 413 YSSQK 417
            S+++
Sbjct: 418 NSTKQ 422


>gi|62898149|dbj|BAD97014.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 variant [Homo sapiens]
          Length = 483

 Score =  173 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 159/472 (33%), Positives = 238/472 (50%), Gaps = 31/472 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  +V      G  +PTP+Q+  IP++L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPVILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  LSE---DPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 123 ADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI---QNITSLVPFTR 178
             V+I TPGR      +     +  I  LV+DEADR+L+ G   +    + I + VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQ 237
           QTLLFSAT+TD L+++       P   E   P ST E ++  ++             L Q
Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQ 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             Q +    + IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK    +
Sbjct: 241 RFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI  +
Sbjct: 301 ILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLV 360

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK------ 411
            AIE+ I+KK++  + + + +   L      Q N  R+   I  ++  FD +K+      
Sbjct: 361 HAIEEQIKKKLEEFSVEEAEVLQIL-----TQVNVVRRECEIKLEAAHFDEKKEINKRKQ 415

Query: 412 ------------NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
                          ++ + I  K      K+++ ++   A   G +G  P 
Sbjct: 416 LILEGKDPDLEAKRKAELAKIKQKNRRFKEKVEETLKRQKAGRAGHKGRPPR 467


>gi|218676562|ref|YP_002395381.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218324830|emb|CAV26551.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 423

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 150/425 (35%), Positives = 240/425 (56%), Gaps = 14/425 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLS  ++  + +  +  PT +Q + IPLVL+  DV   AQTGTGKTA+F LP++ 
Sbjct: 7   SFNQLGLSEHLLATLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLPIIQ 66

Query: 62  ILEKGRARVRMPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L + +  V     L+      PTRELA QV DN   Y K  ++ V +  GG+  + Q +
Sbjct: 67  RLIETKDNVIPNPKLVRALVLVPTRELAQQVFDNVTSYAKGTDIKVVVAYGGVSMKVQTE 126

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GAD+L+ TPGR++DH     +++++ E+LV+DEADRMLDMGF+P I+ I S +   
Sbjct: 127 NLRGGADILVATPGRLIDHMFTKNIMLSHTEVLVLDEADRMLDMGFMPDIKRILSRMNEV 186

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL FSAT  ++++ ++   +Q+P  I+V   +STA+T+             +      
Sbjct: 187 RQTLFFSATFDNKIKALAHRMMQSPSEIQVTPKNSTADTVTQMVYPVDKSRKSEL---LA 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L      +  ++F   K+    L   L+  G    +I+G+  Q +R K L +FK G ++
Sbjct: 244 YLIGSKNWQQVLVFTKTKQGTDALVKELKLDGIKAASINGDKSQGARQKALDDFKSGKVR 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++A+D+AARG+DI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L+++++   +
Sbjct: 304 ALIATDVAARGIDIQQLEQVVNYDMPFKAEDYVHRIGRTGRAGNSGLAISLMSQDEAYLL 363

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
             IE+L++ ++  +WL G      P LEK D+A     R  +   +K     + K + + 
Sbjct: 364 GDIERLLDTRLPQEWLEG----FEPSLEK-DLAPDRGGRSKSRSSEKRKMKAKLKIHQNR 418

Query: 416 QKSHI 420
            K+  
Sbjct: 419 GKARR 423


>gi|55821544|ref|YP_139986.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55737529|gb|AAV61171.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
          Length = 528

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 152/373 (40%), Positives = 225/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  +  AV+ AG+ +P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L 
Sbjct: 61  DKIHT---EENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +NNIE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T   ++  F+    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R++I+ +FK G I ++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLGII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|221134107|ref|ZP_03560412.1| DEAD/DEAH box helicase domain-containing protein [Glaciecola sp.
           HTCC2999]
          Length = 442

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 152/375 (40%), Positives = 224/375 (59%), Gaps = 5/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLGLSP V+ AV D GY +P+PIQ + I  VL   DV   AQTGTGKT +F LP++ 
Sbjct: 4   SFSDLGLSPAVLQAVSDQGYTQPSPIQQQAIGPVLDGQDVMAAAQTGTGKTGAFALPIVN 63

Query: 62  ILEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +L +   R      + LIL PTRELAAQVA++ +   ++  L   ++ GG+    Q + L
Sbjct: 64  LLSETSKRPSPNNIKALILTPTRELAAQVAESVKACAQHTQLRSMVVFGGVSINPQMQGL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+LI TPGR+LD   +  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 124 RRGCDILIATPGRLLDLHQQNAVKFSQLEILVLDEADRMLDMGFIHDIKRIMKLIPAKRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT +D ++++++ F Q P  I V   +ST   ++   V           +     
Sbjct: 184 TLLFSATFSDPIRELAKQFTQEPIEISVTPKNSTTPLVKQLLVHAEKSSKTTLLIKL--- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  ++F   K     +   L  +  +  AIHGN  Q +R K L++FK G ++++
Sbjct: 241 IKDNDWQQVLVFTRTKHGANRIAQKLGNKNITAAAIHGNKSQGARTKALADFKSGDVRVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + +V N+D+P+  E+Y+HRIGRTGRAG  G A +    EDIK ++ 
Sbjct: 301 VATDIAARGIDIDQLPNVINYDLPHVPEDYVHRIGRTGRAGATGHAVSFATNEDIKQLND 360

Query: 360 IEKLIEKKVDWLNGD 374
           I+ LI + ++ L  +
Sbjct: 361 IQNLIGEHIEVLEVE 375


>gi|67539522|ref|XP_663535.1| hypothetical protein AN5931.2 [Aspergillus nidulans FGSC A4]
 gi|74657087|sp|Q5B0J9|DBP2_EMENI RecName: Full=ATP-dependent RNA helicase dbp2
 gi|40738604|gb|EAA57794.1| hypothetical protein AN5931.2 [Aspergillus nidulans FGSC A4]
 gi|259479898|tpe|CBF70542.1| TPA: ATP-dependent RNA helicase dbp2 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5B0J9] [Aspergillus
           nidulans FGSC A4]
          Length = 563

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 131/380 (34%), Positives = 209/380 (55%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ KPT IQ +  P+ L   DV GIA+TG+GKT S+ LP + 
Sbjct: 141 TFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIV 200

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 201 HINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDL 260

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 261 SRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQ 320

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T ++SAT   E+++++ +FL N  ++ + +   +A       V   +++ K+  +++ L 
Sbjct: 321 TCMWSATWPKEVRQLASDFLNNYIQVNIGSMDLSANHRITQIVEVISEFEKRDRMIKHLE 380

Query: 240 QSQDTMKNGIIFCNQKKN-VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   N  +     K     +   L + G+   +IHG+  Q+ R  +L+ FK G   +
Sbjct: 381 KIMENRGNKCLVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPI 440

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A T    ++ K   
Sbjct: 441 MVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNAKQAR 500

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    ++  L+ +
Sbjct: 501 DLVTILSEAKQQIDPRLAEM 520


>gi|197337466|ref|YP_002157976.1| cold-shock deAd box protein a [Vibrio fischeri MJ11]
 gi|197314718|gb|ACH64167.1| cold-shock deAd box protein a [Vibrio fischeri MJ11]
          Length = 640

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 138/372 (37%), Positives = 209/372 (56%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L L   ++ A+ D G+V PTPIQ  +IPL+L+  D  G AQTGTGKTA+F LP+L 
Sbjct: 7   EFRQLALDESILSALDDMGFVAPTPIQAASIPLLLEGRDALGKAQTGTGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            +     +   P+ +I+ PTRELA QVA   +  G+N      L I  G     Q + L 
Sbjct: 67  KI---NLKQHNPQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMRALS 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +++ TPGR+ D  NR +L +  +   ++DEAD ML MGF+  +  I    P T Q 
Sbjct: 124 RGAHIIVGTPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPDTAQR 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++ + + +L++P R++V   + T + +E  F         +        +
Sbjct: 184 ILFSATMPPMVKTIVDRYLRDPARVDVAGTNHTVDKVEQNFWVVKGVEKDEAMSRLLETE 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   +++   L   L  +GF   A+HG+I Q  R + + N K G I ++V
Sbjct: 244 ET---DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    ++ +  I
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQMRMLRTI 360

Query: 361 EKLIEKKVDWLN 372
           E++ +  ++ + 
Sbjct: 361 ERVTKSTMEEIQ 372


>gi|294670965|ref|ZP_06735821.1| hypothetical protein NEIELOOT_02671 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307452|gb|EFE48695.1| hypothetical protein NEIELOOT_02671 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 453

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 152/419 (36%), Positives = 229/419 (54%), Gaps = 8/419 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVSSEGYENPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QRLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++D    GK+  + +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIETIVEATPTDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    +NP+ +EV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKNPEVVEVERVDDQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            IEK I++K++ +  +      P  K   A      K     +KS G+   KK    +K
Sbjct: 360 KIEKYIDRKLNEVTVE---GMEPTRKRKSAGGKPKGKGGWGDRKSGGWRGDKKPGGDKK 415


>gi|121606092|ref|YP_983421.1| DEAD/DEAH box helicase domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120595061|gb|ABM38500.1| DEAD/DEAH box helicase domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 487

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 166/388 (42%), Positives = 236/388 (60%), Gaps = 8/388 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L+  +  AV + GY   TPIQ + IP+VLQ  DV G AQTGTGKTA+F LP+L 
Sbjct: 4   SFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFALPLLQ 63

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + K       P        +L PTRELA QVA+  + Y K  NL  A++ GG+  + Q 
Sbjct: 64  RMMKHENASTSPARHPVRALVLLPTRELAVQVAEQVKLYAKYTNLNSAVVFGGMDMKPQT 123

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P 
Sbjct: 124 LELKKGVEVLVATPGRLLDHIEAKNTVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPK 183

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R TLLFSAT + E+++++ +FLQ+P  IEV   ++TA T+E  F +  A   ++     
Sbjct: 184 QRITLLFSATFSPEIKRLAASFLQDPVTIEVARSNATAATVEQHFYSVGADDKRRA---L 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             +     +K   +F N K     L  SLE++G    A+HG+  Q  R+K L +FK G +
Sbjct: 241 HQILKARDLKQAFVFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLKALESFKSGEV 300

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+V +D+AARGLDI DV  VFNFDVP  AE+Y+HRIGRTGRAG  G A + VA  D + 
Sbjct: 301 DLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVSFVAASDQRL 360

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
           +  IEKLI+ K++    +     P + +
Sbjct: 361 VTDIEKLIKTKIEIEPMEFEEDTPRISE 388


>gi|332798288|ref|YP_004459787.1| DEAD/DEAH box helicase domain-containing protein [Tepidanaerobacter
           sp. Re1]
 gi|332696023|gb|AEE90480.1| DEAD/DEAH box helicase domain protein [Tepidanaerobacter sp. Re1]
          Length = 529

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 154/392 (39%), Positives = 221/392 (56%), Gaps = 13/392 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++ A+ D G+ + TPIQ + IP + +  DV G AQTGTGKTA+F LP+L
Sbjct: 4   MKFEELNLSKELLRAINDMGFEEATPIQSQAIPYIYEGRDVIGQAQTGTGKTAAFGLPIL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
            +++      +     IL PTRELA QVA+  +   K       L +  G P E Q   L
Sbjct: 64  DMIDTDDKNQQAI---ILCPTRELAIQVAEELKALSKYKEGMKILPVYGGQPIERQIHAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  ++I TPGR++DH  R  L + N +I+V+DEAD MLDMGF   I+ I    P  RQ
Sbjct: 121 KRGVQIIIGTPGRVMDHMRRHTLKLQNTKIVVLDEADEMLDMGFREDIEKILEDTPKARQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT+   + +++E +L NP+ I          T+       +    +        L
Sbjct: 181 TLMFSATIPKPILELAERYLNNPQLI---KVVHKELTVPSVEQYYFEVKERDKVEALSRL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++FCN KK V  L   L+ +G+S   +HG++ Q  R ++++ FK GTI ++
Sbjct: 238 IDFYNPNLALVFCNTKKRVDELMEQLQARGYSADGLHGDMSQSQRDRVMTKFKNGTIDIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV  V NFDVP   E Y+HRIGRTGRAGR GKAFT V   DI  +  
Sbjct: 298 VATDVAARGLDVDDVDVVVNFDVPQNDEYYVHRIGRTGRAGRSGKAFTFVIGRDIYKLKD 357

Query: 360 IEKLIEKKV------DWLNGDLSSLNPPLEKI 385
           I++    K+        L+ + + +N  LEK+
Sbjct: 358 IQRYANTKILRREIPSLLDVEETRINLLLEKV 389


>gi|313885567|ref|ZP_07819317.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619297|gb|EFR30736.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 526

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 136/372 (36%), Positives = 216/372 (58%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DL L  +++  + + G+ +PTPIQ + IP VLQ  D+ G AQTGTGKTA+F LPML
Sbjct: 1   MKFSDLNLKTELIETLDELGFEEPTPIQQQAIPFVLQGRDLVGQAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+     ++    LI+ PTRELA QV D      K     V  + GG     Q  +++
Sbjct: 61  QGLDTDHRALQ---ALIIAPTRELAIQVHDELYSLSKGLKTKVYAVYGGYSIGKQIDRIQ 117

Query: 121 R-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    V++ TPGR+LD   R  +  + ++ L++DEAD ML+MGFI  I+ I    P +RQ
Sbjct: 118 KLKPQVIVGTPGRLLDLMRRQIIDTSYLKTLIMDEADEMLNMGFIEDIKAIVEQTPSSRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSATM   +Q +++ FL  P  +++     TA+ I             +   +   +
Sbjct: 178 TLMFSATMPKSVQNLAQQFLTQPAEVKIEAKHLTADLI---DQYFVKCRDSEKFDILTRM 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              ++    IIF   KK V  +   L  +G+    IHG++ Q+ R ++++ FK+G ++L+
Sbjct: 235 LDIESPDKAIIFARTKKRVDEIGRGLSLRGYDAELIHGDVTQQKRTQVMNEFKQGRLELL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV+N+D+P   E+Y+HRIGRTGRAG  G++ T V + ++ ++  
Sbjct: 295 VATDVAARGIDVSGVTHVYNYDIPQDPESYVHRIGRTGRAGNEGQSVTFVMESELPYLRT 354

Query: 360 IEKLIEKKVDWL 371
           IE L + ++  +
Sbjct: 355 IESLTKNQMTPM 366


>gi|77360862|ref|YP_340437.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76875773|emb|CAI86994.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 466

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 164/469 (34%), Positives = 251/469 (53%), Gaps = 9/469 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AVL+ GY  PTPIQ + IP +++R DV   AQTGTGKTA F LP++
Sbjct: 1   MSFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLI 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G   +    R LIL PTRELA QV++N E+Y K+ N++  ++ GG+    Q ++L
Sbjct: 61  ERLSSGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR++D  N+  +  +++E+LV+DEADRMLDMGFI  I+ + + +P  RQ
Sbjct: 121 RKGVDILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++ +++  + +P  I V   ++TA+++  C  A                
Sbjct: 181 NLMFSATFSDEIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKPRKTALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  ++F   K     L   LE+      AIHGN  Q +R+K L  FK G ++++
Sbjct: 238 IRTNDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLDI ++ HV N+D+PN  E+Y+HRIGRTGRAG  G A + V  ED   +  
Sbjct: 298 VATDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTTEDAVDLYG 357

Query: 360 IEKLIEKKVDWLNGD-LSSLNP-PLEKID---IAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           IE+ I + +     +    +NP P   +D   IA     + N P  +  +   +      
Sbjct: 358 IERFIGELIPRATEEGFEPVNPVPERDLDARPIAPKKAKKTNQPFNKPKSDSSKPNNKKP 417

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
           +   +          K      +        R ++      + R   ND
Sbjct: 418 NNGGNGTGARRGGSKKPVAKTDDKAQSPWAKRESVGGNTQRRRRPSNND 466


>gi|329123747|ref|ZP_08252307.1| ATP-dependent RNA helicase DeaD [Haemophilus aegyptius ATCC 11116]
 gi|327469946|gb|EGF15411.1| ATP-dependent RNA helicase DeaD [Haemophilus aegyptius ATCC 11116]
          Length = 613

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 139/405 (34%), Positives = 230/405 (56%), Gaps = 20/405 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGL   ++ AV D G+  P+PIQ   IP +L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 5   ITFNNLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++      + P+ L++ PTRELA QVAD  E + K      +  L GG  ++ Q + L
Sbjct: 65  AQIDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA V++ TPGRILDH  RG L ++ +  +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 122 KQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++++ F+ +P+ +++       E       + +  +  +        
Sbjct: 182 TALFSATMPEPIRRITKRFMNDPQEVKIKV---NNENAPDIDQSCWYVHGVRKNEALLRF 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++   LEK GF   A++G++ Q+ R + L   + G++ ++
Sbjct: 239 LEVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIV 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 299 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 358

Query: 360 IEKLIEKKVDWLN-------------GDLSSLNPPLEKIDIAQHN 391
           IE L++K ++ +                ++ +   LE  D+ Q+ 
Sbjct: 359 IEHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYR 403


>gi|300311049|ref|YP_003775141.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300073834|gb|ADJ63233.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 520

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 164/408 (40%), Positives = 232/408 (56%), Gaps = 19/408 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS ++V AV + GY  PTPIQ + +P VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMPRTLIL----EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L     +       I      PTRELAAQV ++  +YGK   LT A + GG+    Q 
Sbjct: 61  QRLSAMPRQKINGHVPIRALILAPTRELAAQVEESVRQYGKYLPLTSACIFGGVGINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+L+ TPGR+LDH  +G + + +I+ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 TLLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAALPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT  DE++K++++ L NP  IEV   +ST E I                 + 
Sbjct: 181 KRQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPVDRDKK---HPML 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L      K  ++F   K     L   L + G +  AIHGN  Q +R K L+ FK+G +
Sbjct: 238 AHLIKTHQWKQVLVFTRTKHGANKLVEQLGRDGITAMAIHGNKSQSARTKALAEFKDGKL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             ++A+D+AARG+DI  + HV N+D+PN  E+Y+HRIGRTGRAG  G+A +LV  ++   
Sbjct: 298 TALIATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCIDERDL 357

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           +  IE+ I++++            P+E I   + +   K  PI  +S 
Sbjct: 358 LHDIERFIKREI------------PVEVIAGFEPDPTAKPQPIQLRSG 393


>gi|156052539|ref|XP_001592196.1| eukaryotic initiation factor 4A-12 [Sclerotinia sclerotiorum 1980]
 gi|160385735|sp|A7EM88|FAL1_SCLS1 RecName: Full=ATP-dependent RNA helicase fal1
 gi|154704215|gb|EDO03954.1| eukaryotic initiation factor 4A-12 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 399

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 203/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + ML 
Sbjct: 26  TFQDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 86  VIDTA---VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDY 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 143 GQHIVSGTPGRVADMIRRRNLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 203 VVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDL--YD 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++++
Sbjct: 261 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIS 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 321 TDVWARGIDVQQVSLVINYDLPVNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 381 LYYSTQIDEMPMNVADL 397


>gi|312863656|ref|ZP_07723894.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           vestibularis F0396]
 gi|311101192|gb|EFQ59397.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           vestibularis F0396]
          Length = 529

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 152/373 (40%), Positives = 224/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  +  AV+ AG+ KP+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L 
Sbjct: 61  NKIRT---EENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +NNIE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T   ++  F+    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMGYLGII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|157960747|ref|YP_001500781.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157845747|gb|ABV86246.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 432

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 153/436 (35%), Positives = 237/436 (54%), Gaps = 8/436 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P+++ A+ + GY K TPIQ + IP V +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFAPEILRAISECGYEKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +    +          IL PTRELAAQ+ADN   Y K  +L V  + GG+  ++Q  K
Sbjct: 61  QKMLDNPSTTGRSNARALILTPTRELAAQIADNINDYAKYLDLKVVTVYGGVKMDSQATK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RGAD++I TPGR+L+H     L ++N++ LV+DEADRMLDMGF   IQ I   V   R
Sbjct: 121 LKRGADIIIATPGRLLEHIIACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  +++++   +  P  I  +  ++TA T+         +  ++       
Sbjct: 181 QNLLFSATFSTAVKQLANEMMVKPNVIAADKQNTTAITVSQVVYPVEQRRKRELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F   +     L   L   G     +HG   Q SR + L  FKEG +++
Sbjct: 239 -IGKKNWQQVLVFTATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREFKEGKMRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDI  + +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLA 357

Query: 359 AIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            IEKLI +++    + G        L K   ++ + A+K   +          +KN   +
Sbjct: 358 DIEKLIGQQLRRISIPGYEVGSRDLLIKQLQSRRSFAKKQQRVDNAGAQMIA-EKNMQGR 416

Query: 417 KSHIPLKESEKISKLQ 432
           +  +      KI K++
Sbjct: 417 RVKVKNSSQAKIKKIK 432


>gi|78189083|ref|YP_379421.1| DEAD/DEAH box helicase-like [Chlorobium chlorochromatii CaD3]
 gi|78171282|gb|ABB28378.1| ATP-dependent RNA helicase CsdA [Chlorobium chlorochromatii CaD3]
          Length = 640

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 139/371 (37%), Positives = 216/371 (58%), Gaps = 7/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L L   ++ A+ + GY  PTPIQ +TIP +L   DV G AQTGTGKTA+F LP+L 
Sbjct: 11  NFFSLQLPELLMKALEEVGYESPTPIQAQTIPFLLAGRDVLGQAQTGTGKTAAFALPILA 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++  +A    P+ L+L PTRELA QVA+ F++Y +       + I  G  +  Q + L 
Sbjct: 71  SIDIQQAE---PQALVLAPTRELAIQVAEAFQRYAEYLKGFHVVPIYGGQDYGIQFRMLR 127

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG L + +++ LV+DEAD ML MGFI  ++ I    P  RQ 
Sbjct: 128 RGVQVVVGTPGRVMDHIRRGSLNLTHLKTLVLDEADEMLRMGFIDDVEWILEQTPAGRQV 187

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++++++ +L  P  + + T ++T +TI   +      +      +   + 
Sbjct: 188 ALFSATMPPPIRRIAQKYLDQPAEVTIQTKTTTVDTIRQRYWVVGGSHK---LDILTRIL 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + L   L+ +G++  A++G++ Q  R + +   K G I ++V
Sbjct: 245 EVEPFDGMIIFSRTKTMTIELAEKLQARGYAAAALNGDMPQNQRERTIEQLKNGNINIVV 304

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   VA  +   + AI
Sbjct: 305 ATDVAARGLDVERISHVVNYDIPSDTESYVHRIGRTGRAGRAGDAILFVAPREKNMLYAI 364

Query: 361 EKLIEKKVDWL 371
           EK    +++ +
Sbjct: 365 EKATRSRIEQM 375


>gi|33594923|ref|NP_882566.1| putative ATP-dependent RNA helicase [Bordetella parapertussis
           12822]
 gi|33564999|emb|CAE39946.1| putative ATP-dependent RNA helicase [Bordetella parapertussis]
          Length = 582

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 160/450 (35%), Positives = 246/450 (54%), Gaps = 9/450 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F DLGL+P ++ A+ +AG+ +PT +Q   IP  +   D+   +QTG+GKTA+F+LP +
Sbjct: 37  MSFEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPAL 96

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
             I  +   +    + L+L PTRELA QVAD    YG+N      A ++GG+P+ AQ K 
Sbjct: 97  NRIAHQPGNKGVGVQVLVLTPTRELALQVADATASYGRNLPGLRTATVVGGMPYGAQLKA 156

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R  DVL+ TPGR++DH   G++ +N +  LV+DEADRMLDMGFI  I+ I   +P  R
Sbjct: 157 LSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPKER 216

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+   + +++E  ++ P+RIE+         I    +       K    L   
Sbjct: 217 QTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKHANITQSLLYADDAAHKMR--LLDH 274

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   I+F   K+   +L   L  QGF+  A+HG+++QR R + L   + G +++
Sbjct: 275 VLRDARLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGQLQRGQLRV 334

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + H  NFD+P +AE+Y+HRIGRTGRAGR G+AFTL    +   + 
Sbjct: 335 LVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGQAFTLATHAERHKVR 394

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG--FDRRKKNYSSQ 416
            IE  I + +   N ++ +   P            R   P+  K  G     R+     Q
Sbjct: 395 RIEHYIGQSI---NAEVIAGLEPQRTPRPNTGGPRRGGKPMGGKRPGGYGAPREFGDRPQ 451

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFR 446
           + +    + +   + Q+D  +    S G R
Sbjct: 452 RPYGDRPQRDFGDRPQRDASDRPQRSFGDR 481


>gi|293603664|ref|ZP_06686084.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
           43553]
 gi|292817932|gb|EFF76993.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
           43553]
          Length = 493

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 164/435 (37%), Positives = 247/435 (56%), Gaps = 15/435 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD GL P ++ ++ + GY  PTPIQ + IP+V++  DV G AQTGTGKTA+F +P+L 
Sbjct: 18  TFADFGLHPLLLQSIAETGYTVPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTVPILH 77

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QV ++ ++Y K   L  A++ GG+    Q 
Sbjct: 78  RLMPLANASASPARHPVRALILTPTRELADQVFESVKRYSKQTPLRSAVVFGGVDIGPQK 137

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG ++L+ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF+P ++ I  L+P 
Sbjct: 138 EALRRGCEILVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPA 197

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT ++E++K+  ++L  P  IEV   ++TA TI        +   +   +  
Sbjct: 198 QRQGLLFSATFSNEIRKLGRSYLNQPVEIEVAARNATATTITQIAYKMSSDAKRAAVVHL 257

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                   +K  I+F N K     L   LE+ G    +IHG+  Q  RMK L  FK G +
Sbjct: 258 ---VKSRGLKQVIVFSNTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKAGDL 314

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLD+  V  V N+D+P  AE+Y+HRIGRTGRAG  G+A  L   ++ + 
Sbjct: 315 EVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPDEERF 374

Query: 357 IDAIEKLIEKKVDWLNGDL--SSLNPPLEKIDIAQHNHARKNNPIPQKSTG-----FDRR 409
           +  IEKLI+++V     DL   ++     + +    + +R+     ++S G        R
Sbjct: 375 LLDIEKLIKREVPRGTLDLPADAVARSHRRSEDRPSSSSREGREGGRESRGERGGRSSDR 434

Query: 410 KKNYSSQKSHIPLKE 424
           +  Y+S  S  P+ +
Sbjct: 435 RSGYTSGPSRQPVDD 449


>gi|260777564|ref|ZP_05886457.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605577|gb|EEX31862.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 420

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 155/424 (36%), Positives = 227/424 (53%), Gaps = 12/424 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLS  +   V   G+  PTPIQ + IP VL+  DV   AQTGTGKTA+F LP+L 
Sbjct: 3   SFQHLGLSQALASTVEKLGFDTPTPIQEQAIPHVLEGKDVLAGAQTGTGKTAAFGLPLLN 62

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +      L++ PTRELA QV D+   Y     + +    GG     Q +
Sbjct: 63  KLLDQEASRDPQSNDVLALVVVPTRELAQQVFDSLTAYASAAEIKIVTAYGGTSMNVQTQ 122

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +G DVLI TPGR+LDH     + +     LV+DEADRMLDMGF+P IQ I   +   
Sbjct: 123 NLRQGCDVLIATPGRLLDHLYCKNINLRKTSYLVLDEADRMLDMGFMPDIQRILKKLNPE 182

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL FSAT    ++ ++   +  P  ++V   +STAE +       Y    K+ A L  
Sbjct: 183 RQTLFFSATFDKRIKTIAHKLMNEPVEVQVTPSNSTAEKV---KQMVYPVDKKRKAELLA 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L      +  ++F   K+    L   L+  G    +I+G+  Q +R K L +FK GTI+
Sbjct: 240 YLIGSRNWQQVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGTIR 299

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++A+D+AARGLDI  +  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L++K++   +
Sbjct: 300 ALIATDVAARGLDINQLEQVVNFDMPYKAEDYVHRIGRTGRAGQEGLAVSLMSKDEEYLL 359

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           +AIE+L++ ++  +WL G   S+  P E     +    R+ +   +K     + K + + 
Sbjct: 360 EAIERLLDARLPQEWLQGFEPSIEEPTEN---ERERGGRRKSRSSEKRKMKAKLKIHANR 416

Query: 416 QKSH 419
            K  
Sbjct: 417 GKKK 420


>gi|152981028|ref|YP_001352892.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151281105|gb|ABR89515.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 466

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 146/458 (31%), Positives = 243/458 (53%), Gaps = 31/458 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   ++ A+ ++GY  PT +Q + IP  ++  D+   +QTG+GKTA+F+LP L
Sbjct: 1   MTFESLGLHASIIKALTESGYTAPTGVQAQAIPAAIEGRDMMVSSQTGSGKTAAFMLPAL 60

Query: 61  TIL------------------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYG 96
                                      ++ R +   P+ L+L PTRELA QV  + +KYG
Sbjct: 61  HKFASEGDQPQTGKTPNQEAQSARSRGDRPRFKPAQPKMLVLTPTRELALQVTTSTDKYG 120

Query: 97  KNYNLTVALLI-GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEA 155
                  A+ I GG+P+  Q + L +  ++L+ TPGR++DH   GK+  + ++ILV+DEA
Sbjct: 121 AFMKRVKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA 180

Query: 156 DRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
           DRMLDMGFI  I+ I +  P  RQT+LFSAT+   +  +++   ++   I++   ++  E
Sbjct: 181 DRMLDMGFIDDIEKIVAATPEGRQTMLFSATLDGMVGNMAKRITKDALIIQIAGSATKHE 240

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
            I+ C         K    +   L   +TM   ++F   K++   +   L   GF+  A+
Sbjct: 241 NIKQCVHFVDDLSHKNR--MLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAAAL 298

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG++ Q +R + L   + G I+++VA+D+AARG+D+P + HV N+D+P   E+Y+HRIGR
Sbjct: 299 HGDMHQGARNRTLDGLRRGQIRVLVATDVAARGIDVPGITHVVNYDLPKFPEDYVHRIGR 358

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           TGRAGR+G A +LV   +  ++  IE+ I++    +  ++     P       + NH + 
Sbjct: 359 TGRAGRNGIAVSLVNHAESMNVKRIERFIKQ---LIPVEVIEGFEPKRSASAPRSNH-KP 414

Query: 396 NNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQ 433
               P  + G   +    +  K + P K+    +K  +
Sbjct: 415 GGWKPGDNRGNTAKPGQRTFSKPNAPRKDGSSFNKGPR 452


>gi|312278882|gb|ADQ63539.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
           thermophilus ND03]
          Length = 528

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 153/373 (41%), Positives = 225/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  +  AV+ AG+ +P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L 
Sbjct: 61  DKIRT---EENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +NNIE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T   ++  F+    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R++I+ +FK G I +MV
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDIMV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLGII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|271500987|ref|YP_003334012.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270344542|gb|ACZ77307.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
          Length = 452

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 165/455 (36%), Positives = 253/455 (55%), Gaps = 15/455 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY +PTP+Q + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFQSLGLSADILRAVEEQGYREPTPVQSQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L +        R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    Q  
Sbjct: 61  QLLNESPVLAKGRRPVRALILTPTRELAAQIGENVQAYSKYLRLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+LI TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILIATPGRLLDLEHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLAKLPPK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE+++++   L NP  +EV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDEIKELAGKLLTNPASVEVVRRNTPSELV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L+NFK+G I+
Sbjct: 238 HLIGKHNWQQVLVFTRTKHGANHLAELLNKDGITAAAIHGNKSQGARTRALANFKDGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL-----NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             IE+L+++++  +       D +    P++         A +    PQ      R + +
Sbjct: 358 RDIERLLKREIPRIAIPGYEPDPTIKAEPIQNGRQGGRGGAPRQGDRPQGERATARPQGD 417

Query: 413 YSSQKSH----IPLKESEKISKLQQDIQENDADSL 443
              Q        P    E     ++  +   A++ 
Sbjct: 418 RPLQPRRDGGARPAGRPEGQPARRRPPRNKPANAQ 452


>gi|59713567|ref|YP_206342.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|59481815|gb|AAW87454.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 634

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 138/372 (37%), Positives = 208/372 (55%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L L   ++ A+ D G+V PTPIQ  +IPL+L+  D  G AQTGTGKTA+F LP+L 
Sbjct: 7   EFRQLALDESILSALDDMGFVAPTPIQAASIPLLLEGRDALGKAQTGTGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            +     +   P+ +I+ PTRELA QVA   +  G+N      L I  G     Q + L 
Sbjct: 67  KI---NLKQHNPQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMRALS 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +++ TPGR+ D  NR +L +  +   ++DEAD ML MGF+  +  I    P T Q 
Sbjct: 124 RGAHIIVGTPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPDTAQR 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++ + + +L+ P R++V   + T + +E  F         +        +
Sbjct: 184 ILFSATMPPMVKTIVDRYLREPARVDVAGTNHTVDKVEQNFWVVKGVEKDEAMSRLLETE 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   +++   L   L  +GF   A+HG+I Q  R + + N K G I ++V
Sbjct: 244 ET---DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    ++ +  I
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQMRMLRTI 360

Query: 361 EKLIEKKVDWLN 372
           E++ +  ++ + 
Sbjct: 361 ERVTKSTMEEIQ 372


>gi|315049467|ref|XP_003174108.1| ATP-dependent RNA helicase fal1 [Arthroderma gypseum CBS 118893]
 gi|311342075|gb|EFR01278.1| ATP-dependent RNA helicase fal1 [Arthroderma gypseum CBS 118893]
          Length = 403

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L 
Sbjct: 30  TFDDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++      +    L+L PTRELA Q+       G   N+     IGG       +KLE 
Sbjct: 90  VIDTVLRESQA---LVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEH 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 147 GQHVVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVV 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 207 VVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDL--YD 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++++
Sbjct: 265 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIS 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 325 TDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIE 384

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 385 LYYSTQIDEMPMNVADL 401


>gi|307720922|ref|YP_003892062.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979015|gb|ADN09050.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 417

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 161/397 (40%), Positives = 241/397 (60%), Gaps = 7/397 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLS  ++ A+ + GY  PTPIQ K IP++L++ D+   AQTGTGKTA F LP+L 
Sbjct: 6   TFNSLGLSAPILKAIKEQGYNTPTPIQQKAIPVILEKKDILAGAQTGTGKTAGFTLPLLE 65

Query: 62  --ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               EK   +    R LIL PTRELAAQV ++   YGK+      ++ GG+    Q   L
Sbjct: 66  LLSREKPTKQKHKIRALILTPTRELAAQVGESVALYGKHLPFKSTVIFGGVKINPQISNL 125

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D++I TPGR+LDH ++  + +  +E L++DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 126 RKGTDIVIATPGRLLDHISQKTIDLREVEYLILDEADRMLDMGFINDIKKILNIIPNQRQ 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT +D ++K+S  FL  PK IEV   ++++E ++           ++        
Sbjct: 186 TLLFSATYSDAIKKLSNQFLNAPKLIEVARANTSSEIVKQAVYHVDKTRKRELLTHL--- 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  ++F   K     L   LE  G +  AIHGN  Q +R K L++FK+G ++++
Sbjct: 243 INEGKWQQVLVFTRTKHGANRLSGQLESDGITAVAIHGNKSQNARTKALADFKKGDVRVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV N+++PN +E+Y+HRIGRTGRAG  G+A +LV  ++ + +  
Sbjct: 303 VATDIAARGIDIDQLPHVINYELPNVSEDYVHRIGRTGRAGNGGEAISLVCVDEDEFLQN 362

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHAR 394
           IEKLI+K +   WL G     +   E I++  +  AR
Sbjct: 363 IEKLIKKDIPKVWLKGFKPDPSIKAEPINMGGNRGAR 399


>gi|302654809|ref|XP_003019203.1| hypothetical protein TRV_06752 [Trichophyton verrucosum HKI 0517]
 gi|291182911|gb|EFE38558.1| hypothetical protein TRV_06752 [Trichophyton verrucosum HKI 0517]
          Length = 403

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L 
Sbjct: 30  TFDDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++      +    L+L PTRELA Q+       G   N+     IGG       +KLE 
Sbjct: 90  VIDTVLRESQA---LVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEH 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 147 GQHVVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVV 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 207 VVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDL--YD 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++++
Sbjct: 265 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIS 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 325 TDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIE 384

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 385 LYYSTQIDEMPMNVADL 401


>gi|296817029|ref|XP_002848851.1| eukaryotic initiation factor 4A-12 [Arthroderma otae CBS 113480]
 gi|302506162|ref|XP_003015038.1| hypothetical protein ARB_06798 [Arthroderma benhamiae CBS 112371]
 gi|238839304|gb|EEQ28966.1| eukaryotic initiation factor 4A-12 [Arthroderma otae CBS 113480]
 gi|291178609|gb|EFE34398.1| hypothetical protein ARB_06798 [Arthroderma benhamiae CBS 112371]
 gi|326469057|gb|EGD93066.1| eukaryotic initiation factor 4A-12 [Trichophyton tonsurans CBS
           112818]
 gi|326480615|gb|EGE04625.1| eukaryotic initiation factor 4A-12 [Trichophyton equinum CBS
           127.97]
          Length = 399

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L 
Sbjct: 26  TFDDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++      +    L+L PTRELA Q+       G   N+     IGG       +KLE 
Sbjct: 86  VIDTVLRESQA---LVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEH 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 143 GQHVVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 203 VVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDL--YD 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++++
Sbjct: 261 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIS 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 321 TDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 381 LYYSTQIDEMPMNVADL 397


>gi|299822345|ref|ZP_07054231.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601]
 gi|299815874|gb|EFI83112.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601]
          Length = 512

 Score =  173 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 155/393 (39%), Positives = 230/393 (58%), Gaps = 12/393 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++ GL  KVV +V   G+ + TPIQ KTIPL L   D+ G AQTGTGKTA+F LP++ 
Sbjct: 5   KFSEFGLDEKVVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPIIN 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++   +    + LI+ PTRELA QV++   K   + +  V  + GG     Q + L++
Sbjct: 65  KIDQ---KNNNIQALIIAPTRELAIQVSEELYKLSYDKHARVLAVYGGSDISRQIRSLKK 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LD  NR  L + N+E LV+DEAD ML+MGFI  I+ I   VP  RQTL
Sbjct: 122 NPQIIVGTPGRMLDLINRRVLKLENVETLVLDEADEMLNMGFIDDIEAILKSVPSERQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +++++E F+ +P+ + +     TA  IE         + K+   +   L  
Sbjct: 182 LFSATMPDPIRRIAERFMHSPELVRIKAKEMTALLIEQ---FFVKVHEKEKFDVLSRLLD 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  IIF   K+ V  L  +L+ +G+    IHG++ Q  RM +L  FKEG I ++VA
Sbjct: 239 VQAPELAIIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E
Sbjct: 299 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVE 358

Query: 362 KLIEKKVDWLNGD------LSSLNPPLEKIDIA 388
           +  +K+++ L            L    EKI+ A
Sbjct: 359 ETTKKRMEPLKPPTWDEAFAGQLRVAQEKIEEA 391


>gi|170693410|ref|ZP_02884569.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170141565|gb|EDT09734.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 510

 Score =  172 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 172/466 (36%), Positives = 247/466 (53%), Gaps = 25/466 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGLS  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                       +  R  R LIL PTRELAAQV ++   YGK   L   ++ GG+    Q
Sbjct: 61  QRLNSMPANTSASGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G D+++ TPGR+LDH  +  + ++++EILV+DEADRMLDMGFI  I+ + + +P
Sbjct: 121 IGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT +DE++ +++N L +P  IEV   ++TAET+            ++    
Sbjct: 181 PKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTH 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 Q      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK+GT
Sbjct: 241 L---IKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGT 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++++
Sbjct: 298 LQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQ 357

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKI-------DIAQHNHARKNNPIPQKSTGF 406
            +  IEKLI++ V  + + G         E I               R+    P+   G 
Sbjct: 358 LLKDIEKLIKRPVPQEVIAGFEPDPTAKPEPILRRGQGGGGGGGRSPRQGQGAPKGGNGG 417

Query: 407 DRRKKNYSSQKSHIPLKESE--------KISKLQQDIQENDADSLG 444
             +    S Q+     ++ +           + ++D Q  D     
Sbjct: 418 AAKPAQRSGQRPANAQQQPKPQGAKPAGNGGQPRRDGQRQDDRPRA 463


>gi|149371676|ref|ZP_01891092.1| RNA helicase [unidentified eubacterium SCB49]
 gi|149355303|gb|EDM43863.1| RNA helicase [unidentified eubacterium SCB49]
          Length = 419

 Score =  172 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 153/370 (41%), Positives = 226/370 (61%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGLS  ++ A+   GY  P+PIQ K IP +L+  DV   AQTGTGKTA F LPML
Sbjct: 1   MTFKDLGLSDPLLKAISKKGYTTPSPIQAKAIPKILEGKDVLASAQTGTGKTAGFSLPML 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            I+ K   +   P    I+ PTRELAAQ+    + Y    ++   ++ GG+    Q + L
Sbjct: 61  HIITKQPFQRHRPVKALIVTPTRELAAQILKEIKDYSAFTDVRSTVIFGGVNANPQIRAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G D+L+ TPGR+LD  ++G   M  +E LV+DEADRMLDMGF+  I  I +++P  RQ
Sbjct: 121 KQGTDILVATPGRLLDLHSQGVFNMKKVEFLVLDEADRMLDMGFVRDINKILAILPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++K++++FL NP  +E    +STAE ++     T         +     
Sbjct: 181 NLLFSATFSKEIKKLAQSFLTNPVLVEAQRENSTAEKVKQTIYKTNKSAKTNLVIKL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  +IF   K     L   L K      AIHGN  Q +R K L+ FK+G+I+++
Sbjct: 238 ITEGNWEQVLIFTRTKHGANRLAEKLGKADVKSAAIHGNKSQGARTKALAGFKDGSIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + HV N+++PN  E+Y+HRIGRT RAG  G A ++V+ ++ +++  
Sbjct: 298 VATDIAARGLDIPLLPHVINYELPNIPEDYVHRIGRTARAGASGDAISIVSVDEFEYVKG 357

Query: 360 IEKLIEKKVD 369
           IEKL+ +K++
Sbjct: 358 IEKLLGEKLN 367


>gi|319787505|ref|YP_004146980.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466017|gb|ADV27749.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 616

 Score =  172 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 139/371 (37%), Positives = 214/371 (57%), Gaps = 7/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL   ++ A+   GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+
Sbjct: 13  TFGELGLPEPLLAALTAVGYETPSPIQAATIPALLSGRDVLGTAQTGTGKTAAFALPILS 72

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+   AR   P+ L+L PTRELA QVA+ F++Y         L I  G  +  Q   L 
Sbjct: 73  HLDLKLAR---PQALVLAPTRELAIQVAEAFQRYAVQMPGFQVLPIYGGQGYGPQLHALR 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG L ++ +  LV+DEAD ML MGFI  ++ +   VP  RQ 
Sbjct: 130 RGVHVVVGTPGRVIDHLERGTLDLSGLRNLVLDEADEMLRMGFIDDVEAVLKKVPDERQV 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++++++ +L+ P  + + + ++T+  I   +      +           +
Sbjct: 190 ALFSATMPPPIRRIAQTYLREPVEVTIASKTTTSANIRQRYWFVSGMHKLDALTRILEAE 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M   I+F   K     L + L+ +G +  AI+G++ Q+ R + +   K+G + ++V
Sbjct: 250 PFDAM---IVFARTKAATEELANKLQARGVAAAAINGDMQQQQRERTIQQLKDGRLDVLV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   V   +   + AI
Sbjct: 307 ATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVTPREKGMLRAI 366

Query: 361 EKLIEKKVDWL 371
           E+   + ++ +
Sbjct: 367 ERATRQPIEEM 377


>gi|225155423|ref|ZP_03723915.1| Superfamily II DNA and RNA helicase-like protein [Opitutaceae
           bacterium TAV2]
 gi|224803879|gb|EEG22110.1| Superfamily II DNA and RNA helicase-like protein [Opitutaceae
           bacterium TAV2]
          Length = 536

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 164/372 (44%), Positives = 232/372 (62%), Gaps = 6/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL+  +  AV + GY +PTPIQ + +P VL   DV G AQTGTGKTA+F LP+L  
Sbjct: 135 FSKLGLNDALAFAVTEMGYTEPTPIQAQAVPAVLAGRDVTGSAQTGTGKTAAFALPILHK 194

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     R+R    L+LEPTRELA QV + F+KY K  +LT  ++ GG+ +  Q + L+RG
Sbjct: 195 LGAHERRLRC---LVLEPTRELALQVEEAFQKYSKYTDLTATVVYGGVGYGKQREDLQRG 251

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV+  TPGR+LDH  +G + + ++EILV+DE DRMLDMGF+P ++ I    P  RQTL 
Sbjct: 252 VDVVAATPGRLLDHIEQGTMTLADVEILVLDEVDRMLDMGFLPDVKRIVQQCPQARQTLF 311

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  EL +++   L++P  I++    S AETI H F    A       +      S+
Sbjct: 312 FSATLPPELAQLASWALRDPVEIKIGQRRSPAETISHAFYPVVASQKFDLLIDLL---SR 368

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K+ IIF   K     + H L+++G +V  IH + +QR R++ L  FK G  +++VA+
Sbjct: 369 TEFKSVIIFTRTKMGADRIAHRLQREGHTVGVIHSDRNQRERVEALEGFKSGKFEVLVAT 428

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV N+DVP   E+Y+HRIGRTGRA   G AFTLV ++D++   +IE+
Sbjct: 429 DIAARGLDIAGVSHVINYDVPENPEDYVHRIGRTGRANASGDAFTLVTEDDVRDARSIER 488

Query: 363 LIEKKVDWLNGD 374
            I  +++    D
Sbjct: 489 YINAEIERKKID 500


>gi|91794665|ref|YP_564316.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91716667|gb|ABE56593.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 611

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 151/484 (31%), Positives = 251/484 (51%), Gaps = 44/484 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ A+ + GY  PTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L 
Sbjct: 7   TFRELGLSENLLRALDELGYENPTPIQSASIDPLMAGKDIIGQAQTGTGKTGAFALPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++    ++  P+ L+L PTRELA QVA+ F  Y K+      L I  G     Q   L+
Sbjct: 67  KVDM---KINAPQILVLAPTRELAVQVAEAFGSYAKHMKGFHVLPIYGGQSMHQQLSALK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG L +++++ LV+DEAD ML MGFI  I+ +    P   Q 
Sbjct: 124 RGPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWVLEHKPKDSQL 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +++++V+   L NP  I +   ++T E+I+  FV        +  +    ++
Sbjct: 184 ALFSATMPEQIKRVAAKHLTNPVNISIAASTTTVESIDQRFVQVSQHNKLEALVRVLEVE 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + +   IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++
Sbjct: 244 NTEGV---IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +GHV N+D+P   E Y+HRIGRTGRAGR G A   V   +++ +  I
Sbjct: 301 ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTI 360

Query: 361 EKLIEKKV------------------------DWLNGDLSSLNPPLEKID---------I 387
           E+    ++                        + LNGDL  +   + ++          +
Sbjct: 361 ERATNSRIAPMKVPSPESVAERRLSRLGELIQETLNGDLDFMKSAVAELCQQLEVDTDLL 420

Query: 388 AQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKI----SKLQQDIQENDADSL 443
           A     +     P +      R+++   ++S    + SE+      + Q+  ++      
Sbjct: 421 AAALLQQVQAERPLQLPAIQERQRDSRDERSERSGERSERSGDRGERSQRPRRDARPAPT 480

Query: 444 GFRG 447
            F G
Sbjct: 481 SFGG 484


>gi|85713494|ref|ZP_01044484.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
 gi|85699398|gb|EAQ37265.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
          Length = 479

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 174/466 (37%), Positives = 254/466 (54%), Gaps = 20/466 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL+  +  A+ +  Y+ PTPIQ +TIP+ L   D+ GIAQTGTGKTASF LP+L 
Sbjct: 9   SFQDFGLADPISRALAEENYLTPTPIQAQTIPIALTGRDIVGIAQTGTGKTASFALPILH 68

Query: 62  ILEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L + R + +     +L   PTREL+ Q+ DNF  YG++  LT AL IGG+P   Q + +
Sbjct: 69  RLLQNRIKPQPKSCRVLVLSPTRELSGQILDNFNAYGRHLRLTSALAIGGVPMGRQVRSV 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DV++ TPGR+LD      L +  +E LV+DEADRMLDMGFI  I+ + + +P  RQ
Sbjct: 129 MHGVDVMVATPGRLLDLVQSNGLKLGQVEFLVLDEADRMLDMGFIHDIRKVIAKLPVKRQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  ++ +++   L++P R+ V   +ST + I    +                L
Sbjct: 189 TLLFSATMPKDIAELANQMLRDPARVAVTPVASTVDRIAQRIIQVDHASK---PAHLAQL 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+ +   +IF   K     +  SL K G    AIHGN  Q  R ++L+ F+ G I+ +
Sbjct: 246 LKQEPVNRALIFTRTKHGADKVVKSLAKSGIRSNAIHGNKSQNHRERVLAAFRTGEIRTL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           VA+D+AARG+D+  + HV NFD+PN  E Y+HRIGRT RAG  G A +LVA  E++ ++ 
Sbjct: 306 VATDIAARGIDVDGISHVVNFDLPNVPETYVHRIGRTARAGTEGAAISLVAGAEEMAYLR 365

Query: 359 AIEKLIEKKVDWLN----GDLSSLNPPLEKI--DIAQHNHARKNNPIPQKSTGFDRRKKN 412
            IEKLI   +   +    G   +   P +    + A H HA +   +     G  RR+  
Sbjct: 366 DIEKLIRVVIPREDRRTSGQREAAPAPQQHRGGNNAPHGHAARAGDVSS-GKGSRRRRGK 424

Query: 413 YSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
            + Q +  P    ++  +  Q      +   G +G   AF+  K+R
Sbjct: 425 GTPQTNRRPESSRQETPRSAQ-----GSKPGGMQG--VAFLHRKSR 463


>gi|269963221|ref|ZP_06177555.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio harveyi
           1DA3]
 gi|269832026|gb|EEZ86151.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio harveyi
           1DA3]
          Length = 421

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 160/435 (36%), Positives = 253/435 (58%), Gaps = 22/435 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++FADLG+  ++V  +     V PTP+Q K+IP VL+  D+   AQTGTGKTA+F LP++
Sbjct: 7   VNFADLGIEQQLVDTLSGMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPII 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++ + R   P+ LIL PTRELA QV DN  +Y  N +L +  + GG     Q +KLE
Sbjct: 67  QTVQQKK-RNGTPQALILVPTRELAQQVMDNLTQYSANTDLKIVCVYGGTSIGVQKRKLE 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+LI TPGR+LDH   G + ++   +LV+DEADRMLDMGF P +Q I   +P  +Q 
Sbjct: 126 EGADILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPQDKQI 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++ ++   + +P  +EV+  ++TAET+       Y    K+   L   L 
Sbjct: 186 MLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETV---KQMVYPVDKKRKRELLAYLI 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  ++F   K+    L   L+  G    +I+G+  Q +R + L  FKEG ++ ++
Sbjct: 243 GSRNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKEGKVRALI 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++   + AI
Sbjct: 303 ATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLHAI 362

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           E L+++++  +WL G   SL   +E                P+++ G  R+ ++   +K 
Sbjct: 363 ENLLDQRLPQEWLEGFEPSLIEEVE----------------PERNGGGRRKSRSSEKRKM 406

Query: 419 HIPLKESEKISKLQQ 433
              L   +   K ++
Sbjct: 407 KAKLAIHKNRGKNRK 421


>gi|300772766|ref|ZP_07082636.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761069|gb|EFK57895.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 435

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 159/420 (37%), Positives = 247/420 (58%), Gaps = 7/420 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL L   ++ A+  +GY  PTPIQ + IP++ QR D+   AQTGTGKTA+F +P+L
Sbjct: 18  LQFKDLKLIAPILKALDASGYQNPTPIQEQAIPIIFQRKDLLACAQTGTGKTAAFAIPIL 77

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L   + +   +  RTL+L PTRELA Q+ +NF+ Y K   +   ++ GG+  + Q   
Sbjct: 78  QMLTYSKEKTAQKRIRTLVLTPTRELAIQIKENFDAYSKELPIRNLVIYGGVGQQPQRDA 137

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+LI TPGR+LD +N+G + +  +E  V+DEADRMLDMGFI  ++ + S++P  R
Sbjct: 138 LRKGIDILIATPGRLLDLYNQGFIDLKQLEYFVLDEADRMLDMGFIHDVKKVISIIPKKR 197

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM  E+QK++ + L++P ++EV   S+TAE I+           +        
Sbjct: 198 QTLLFSATMPAEIQKLASHILEDPSKVEVTPESTTAEKIQQSVYFVSKSDKRHLLTHLL- 256

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               + +++ ++F   K     +   L KQG    AIHGN  Q +R   L+NFK+  +++
Sbjct: 257 --KSENIEHTLVFSRTKHGADRIAKDLAKQGIQAAAIHGNKSQSARQNALNNFKDRKLRV 314

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI D+ +V NFD+PN  E+Y+HRIGRTGRAG+ GKA +    E+  ++ 
Sbjct: 315 LVATDIAARGIDIDDLSYVINFDLPNIPESYVHRIGRTGRAGKDGKAISFCDDEEYAYLL 374

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR--RKKNYSSQ 416
            IEK I  ++  +     SL+   +K   A        N    +S    +  R+  + ++
Sbjct: 375 DIEKSIRMEIPRVEDQPYSLHISPKKPGQAAKKPGTDKNRSKARSGASKKPFRRGKFKTK 434


>gi|186683738|ref|YP_001866934.1| DEAD/DEAH box helicase domain-containing protein [Nostoc
           punctiforme PCC 73102]
 gi|186466190|gb|ACC81991.1| DEAD/DEAH box helicase domain protein [Nostoc punctiforme PCC
           73102]
          Length = 443

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 170/427 (39%), Positives = 244/427 (57%), Gaps = 9/427 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+ LGLS +++ AV + GY +PTPIQ + IP VL   D+   AQTGTGKTASF LP+L
Sbjct: 1   MNFSTLGLSNEIIRAVTERGYTEPTPIQRQAIPAVLSGSDLLAGAQTGTGKTASFTLPLL 60

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   ++      R  R LIL PTRELAAQV ++  +YGK   L   ++ GG+    
Sbjct: 61  HRLSSEKNVKVTSNGYRPIRALILTPTRELAAQVEESVREYGKYLQLNSMVMFGGVGINL 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++L+   D+L+ TPGR+LDH  +G L +++IE+LV+DEADRMLDMGFI  I+ I +++
Sbjct: 121 QKQRLKNRVDILVATPGRLLDHVQQGTLNLSHIEVLVLDEADRMLDMGFIHDIRRILAIL 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLF AT +D+++ ++   L NPK IEV   + TAETI            ++   
Sbjct: 181 PKQRQNLLFFATFSDKIKALAAGLLNNPKMIEVARRNVTAETIAQKIYQVDRDKKRQL-- 238

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
               L  +D     ++F   K     L   L +      AIHGN  Q  R   L+ FK G
Sbjct: 239 -LAHLIRRDNWYQVLVFTRTKYGADRLVKQLGEDRIQALAIHGNKSQPVRTNALAKFKNG 297

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           ++Q++VA+D+AARGLDI ++ HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ 
Sbjct: 298 SLQVLVATDIAARGLDISELPHVVNFDLPNVPEDYVHRIGRTGRAGASGEAVSLVCVDEY 357

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
             +  IEKLIE+++          NP      I      R  +   ++S    +     S
Sbjct: 358 SLLTDIEKLIEQRLPREVVAGFGPNPDTTAEPIPNGRQHRPKSGGEKRSPRTPKPLPRTS 417

Query: 415 SQKSHIP 421
           +++   P
Sbjct: 418 AKRKAAP 424


>gi|167753303|ref|ZP_02425430.1| hypothetical protein ALIPUT_01576 [Alistipes putredinis DSM 17216]
 gi|167659234|gb|EDS03364.1| hypothetical protein ALIPUT_01576 [Alistipes putredinis DSM 17216]
          Length = 476

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 129/374 (34%), Positives = 221/374 (59%), Gaps = 7/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L  +V+  +    + + TP+Q +TIP++L   D+   AQTGTGKTA++ LP+L
Sbjct: 1   MRFDELDLEDEVLDGIDAMNFQEMTPVQEQTIPIILDGRDIIACAQTGTGKTAAYTLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL- 119
             L        + +++I+ PTRELA Q+   F+ +     ++ A++ GG      +++  
Sbjct: 61  NRLLLEGNEKNVVKSVIIVPTRELAQQIDMQFQGFSYYMPVSTAVIYGGGDGRGWDQQKR 120

Query: 120 --ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             + GADV+I TPGR++ H    ++ +++++ L++DEADRMLDMGF   I  I S +P +
Sbjct: 121 GLQMGADVVIATPGRLISHLMNSRVDLSHVDYLILDEADRMLDMGFYDDIMQIVSYMPKS 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL+FSAT+  +++++++  L +P         + ++  E      Y  Y  +   + +
Sbjct: 181 RQTLMFSATLPPKIRQMAKQILNDPAE----VNIAISKPNEAIEQGAYICYEGQKLGIVR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            + S  +    IIF + K+ V  L H+L++    V  +H ++DQ  R +++ +FK   ++
Sbjct: 237 EMFSWPSESKTIIFSSSKQKVKELAHTLKRMKLDVAPMHSDLDQEKREQVMLDFKNNKVR 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+G V N+DVP+  E+YIHRIGRT RA   G+A T V +E+    
Sbjct: 297 ILVATDIVARGIDIEDIGMVINYDVPHDPEDYIHRIGRTARASATGRAVTFVNEEEQGKF 356

Query: 358 DAIEKLIEKKVDWL 371
             IE+ IE+++  L
Sbjct: 357 HRIEEFIEREIPKL 370


>gi|15896262|ref|NP_349611.1| ATP-dependent RNA [Clostridium acetobutylicum ATCC 824]
 gi|15026068|gb|AAK80951.1|AE007798_3 ATP-dependent RNA helicase (superfamily II), YDBR B.subtilis
           ortholog [Clostridium acetobutylicum ATCC 824]
 gi|325510417|gb|ADZ22053.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
           acetobutylicum EA 2018]
          Length = 528

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 136/367 (37%), Positives = 216/367 (58%), Gaps = 3/367 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L+  V+ A+ D G+ +P+ IQ + IP+V+  +D+ G AQTGTGKT +F  P+++
Sbjct: 5   KFSDLKLNSSVLKAIDDMGFEEPSKIQAEAIPVVIDGYDMIGQAQTGTGKTVAFGAPIIS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +    + +IL PTRELA Q+ D   +  K   + V  + GG   E Q + ++R
Sbjct: 65  KIKDIDEK-EGVQAIILTPTRELAIQITDELTRLSKYARVRVLPIYGGQSIERQMRAIKR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGRI+DH  R  + ++ ++ LV+DEAD MLDMGFI  I+ I   +   RQT+
Sbjct: 124 GVDVIVATPGRIMDHIKRKTVKLDKVKFLVLDEADEMLDMGFIDDIEGIIKNISGDRQTM 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K++ N+++   +         + T+E      +   +K        +  
Sbjct: 184 LFSATMPAPIKKLASNYMKKEVKHI--AIIKNSLTVERIQQFYFEVKNKDKFEALCRIID 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  IIFC  K+ V  L  S++ +G++V  +HG++ Q  R+  L  FKE  I  +VA
Sbjct: 242 VEEPETTIIFCRTKRGVDELVESMQFRGYNVEGMHGDMSQNQRINTLKKFKENNIDFLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ +V HV N+D+P   E+Y+HRIGRTGRA   G A++LV   +   I  IE
Sbjct: 302 TDVAARGIDVHNVSHVINYDIPQDMESYVHRIGRTGRANAEGIAYSLVTPREYVMIKQIE 361

Query: 362 KLIEKKV 368
           K  + K+
Sbjct: 362 KFTKSKI 368


>gi|261392319|emb|CAX49846.1| putative ATP-dependent RNA helicase [Neisseria meningitidis 8013]
          Length = 457

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 161/447 (36%), Positives = 253/447 (56%), Gaps = 29/447 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +      +
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVTAQNTTNANVEQHIIAVDTIQKRNL---LE 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 242 RLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPTQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           +AI+KL   K+             +E+I+  +     +    P+K+   + R++N     
Sbjct: 362 EAIKKLTGNKL------------LIERIEGFEPRWWEQEGSKPEKTETSEPRQRNRY--- 406

Query: 418 SHIPLKESEKISKLQQDIQENDADSLG 444
                 ES K  + +    EN A+  G
Sbjct: 407 ------ESAKAQREKNTRPENAANDAG 427


>gi|54302911|ref|YP_132904.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
           SS9]
 gi|46916335|emb|CAG23104.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
           SS9]
          Length = 471

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 175/463 (37%), Positives = 261/463 (56%), Gaps = 12/463 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  ++ AV   GY  P+PIQ + IP V++  DV   AQTGTGKTA+F LP+L
Sbjct: 7   MSFASLGLSAPILEAVTKQGYETPSPIQAQAIPAVIEGKDVMAAAQTGTGKTAAFTLPVL 66

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G   +    R L+L PTRELAAQVA++   Y KN  L+ A++ GG+    Q  +L
Sbjct: 67  ERLSNGPRVKPNQVRALVLTPTRELAAQVAESVALYAKNLPLSSAVVFGGVKINPQMMRL 126

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR+LD +N+  +  + IE+LV+DEADRMLDMGFI  I+ + + +P  RQ
Sbjct: 127 RQGADVLVATPGRLLDLYNQRAVRFDQIEVLVLDEADRMLDMGFIRDIRKLLAAMPKQRQ 186

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++++++  + NP  I V   ++TA T++                     
Sbjct: 187 NLLFSATFSDEIRQLAKGLVNNPVEISVTPRNATAPTVKQWICPVDKSRKANLLTKLLKE 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       ++F   K     L   LE +G    AIHGN  Q +R K L+NFK   IQ++
Sbjct: 247 NNW---GQVLVFTKTKHGANRLTTHLEGRGIKAAAIHGNKSQGARTKALANFKSNEIQVL 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NF++P+ AE+Y+HRIGRTGRAG  G+A +LV  ++ K + A
Sbjct: 304 VATDIAARGLDIEQLPQVVNFELPHVAEDYVHRIGRTGRAGCEGQAISLVCADEYKDLAA 363

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE+LI++ +  + ++G  +    P  ++D      ++   P      G    +++  + K
Sbjct: 364 IERLIKQVLPREQVSGFEAVNKLPESRLDTRAIKPSKPKKPKTDHRDG----QRSGENAK 419

Query: 418 SHIPLKESEK--ISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
            H P  ++++    K Q +     ++  G     P     K R
Sbjct: 420 GHKPQGKNKRHVGGKSQNEGTGKPSNRSGAGTGAPKAKPAKRR 462


>gi|322373478|ref|ZP_08048014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C150]
 gi|321278520|gb|EFX55589.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C150]
          Length = 528

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 152/373 (40%), Positives = 224/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  +  AV+ AG+ KP+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L 
Sbjct: 61  DKIRT---EENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +NNIE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T   ++  F+    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMGYLGII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|307246946|ref|ZP_07529011.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306852231|gb|EFM84471.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 449

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 130/367 (35%), Positives = 208/367 (56%), Gaps = 2/367 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F +L L+P+++ A+   GY +PT +Q +TIP  L   D+ G A TGTGKTA+F+LP +
Sbjct: 8   MTFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAI 67

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QVA+  + + +   L++A + GG+ ++   +  
Sbjct: 68  QHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEVF 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR++ +          +EIL+ DEADRML MGF    + I +   + + 
Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT+  EL     + + +     ++   S  E  +      +A   +    L   L
Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLK-IDAEPSRRERKKIQQWYYHADNLEHKTKLLARL 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S   M+  I+F  ++++V  L  +L K+G     + G++ Q  R + ++  KEG + ++
Sbjct: 247 ISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKEGVVNVL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI DV +V NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D K +  
Sbjct: 307 VATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGK 366

Query: 360 IEKLIEK 366
           I++  E+
Sbjct: 367 IKRYTEE 373


>gi|228477095|ref|ZP_04061733.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
           salivarius SK126]
 gi|228251114|gb|EEK10285.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
           salivarius SK126]
          Length = 528

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 152/373 (40%), Positives = 224/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  +  AV+ AG+ KP+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L 
Sbjct: 61  DKIRT---EENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +NNIE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T   ++  F+    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMGYLGII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|171778647|ref|ZP_02919743.1| hypothetical protein STRINF_00595 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282604|gb|EDT48028.1| hypothetical protein STRINF_00595 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 533

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 150/373 (40%), Positives = 228/373 (61%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ AV  AG+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELNLSEAILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R  V+    L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L 
Sbjct: 61  DKIDTSRNLVQ---ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + ++E L++DEAD ML+MGF+  I+ I S VP +RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLEHVETLILDEADEMLNMGFLEDIEAIISRVPESRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + ++++  NF++NP+ +++     T E I+  ++                  
Sbjct: 178 LLFSATMPEPIKRIGVNFMKNPEHVKIAAKELTTELIDQYYLRVKENEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK   + ++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQGKRLRVLRDFKNDNLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLAII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|86142428|ref|ZP_01060938.1| putative ATP-dependent RNA helicase [Leeuwenhoekiella blandensis
           MED217]
 gi|85831180|gb|EAQ49637.1| putative ATP-dependent RNA helicase [Leeuwenhoekiella blandensis
           MED217]
          Length = 442

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 149/375 (39%), Positives = 222/375 (59%), Gaps = 6/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL   ++ A+ D GY  PTPIQ + IP++L+  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MTFKELGLIDPILKALADKGYTHPTPIQRQAIPILLKGKDLLGSAQTGTGKTAAFTIPIL 60

Query: 61  TILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             +       +  R    LI+ PTRELA Q+ DN ++Y K   +   ++ GG+   +Q +
Sbjct: 61  QQIYDKVGSGKGKRKLKALIVTPTRELAIQIEDNVKEYSKYTGIQSTVIFGGVKQASQVQ 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            + +G DVL  TPGR+LD   +G + +  IE LV+DEAD+MLDMGFI  I+ I  LVP  
Sbjct: 121 AMRKGVDVLTATPGRLLDLVKQGFIDLGTIEYLVLDEADQMLDMGFIHDIKKILKLVPHK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+L FSATM  E+  +S+  L + +++ +     TAE +     A Y    K  A L +
Sbjct: 181 RQSLFFSATMPKEIIDLSKLILGDFEKVSIAPEKPTAERV---DQAVYFVSKKNKAKLLK 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   +  +  ++F   K     +   L+K G    AIHGN  Q +R K L+ FKEG + 
Sbjct: 238 HLIDTEKPETLLVFSRTKHGANKIVKVLDKAGIQAAAIHGNKSQAARQKALNAFKEGKLH 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++  V  +D+PN  E Y+HRIGRTGRA   G A +  A ++  ++
Sbjct: 298 VLVATDIAARGIDVSELELVIQYDLPNVPETYVHRIGRTGRAKASGIAISFCATDERAYL 357

Query: 358 DAIEKLIEKKVDWLN 372
             IEKLI++K+  + 
Sbjct: 358 KDIEKLIKQKIHVIE 372


>gi|68474769|ref|XP_718592.1| hypothetical protein CaO19.10024 [Candida albicans SC5314]
 gi|68474936|ref|XP_718509.1| hypothetical protein CaO19.2488 [Candida albicans SC5314]
 gi|74627388|sp|Q5A9Z6|FAL1_CANAL RecName: Full=ATP-dependent RNA helicase FAL1
 gi|46440277|gb|EAK99585.1| hypothetical protein CaO19.2488 [Candida albicans SC5314]
 gi|46440366|gb|EAK99673.1| hypothetical protein CaO19.10024 [Candida albicans SC5314]
          Length = 399

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P ++  +   G+  P+ IQ + I  ++   D    AQ+GTGKTA+F + ML 
Sbjct: 27  TFESMNLKPDLLKGIYAYGFETPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLE 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    + +  + LIL PTRELA Q+ +  +  G   N+     IGG       KKL++
Sbjct: 87  VIDT---KSKECQALILSPTRELAIQIQNVVKHLGDYMNIHTHACIGGKNVGEDVKKLQQ 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR++D   R  L   NI++L++DEAD +   GF   I  I   +P + Q +
Sbjct: 144 GQQIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYEIYKHLPPSVQVV 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  E+ +++  F  +P +I V     +   I+  +V    +  K   L       
Sbjct: 204 VVSATLPREVLEMTSKFTTDPVKILVKRDEISLSGIKQYYVQCEREDWKFDTLCDL--YD 261

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K  V  L   ++KQ F+V A+HG++ Q  R  I+++F+ G  +++++
Sbjct: 262 NLTITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFRRGNSRVLIS 321

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A  L+ K+D+  +   E
Sbjct: 322 TDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVVTLKEFE 381

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    K+  +  +++ +
Sbjct: 382 KYYSTKIKEMPMNINDI 398


>gi|307262511|ref|ZP_07544156.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306867888|gb|EFM99719.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 449

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 130/367 (35%), Positives = 207/367 (56%), Gaps = 2/367 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F +L L+P+++ A+   GY +PT +Q +TIP  L   D+ G A TGTGKTA+F+LP +
Sbjct: 8   MTFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAI 67

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QVA+  + + +   L++A + GG+ ++   +  
Sbjct: 68  QHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEVF 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR++ +          +EIL+ DEADRML MGF    + I +   + + 
Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT+  EL     + + +     ++   S  E  +      +A   +    L   L
Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLK-IDAEPSRRERKKIQQWYYHADNVEHKTKLLARL 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S   M+  I+F  ++++V  L  +L K+G     + G++ Q  R + ++  KEG + ++
Sbjct: 247 ISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKEGVVNVL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI DV +V NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D K +  
Sbjct: 307 VATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGK 366

Query: 360 IEKLIEK 366
           I +  E+
Sbjct: 367 IRRYTEE 373


>gi|298706995|emb|CBJ29803.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 402

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  +GL  +++  V   G+ +P+ +Q + +  +    DV   +Q+GTGKTA F + +L 
Sbjct: 30  NFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPITSGRDVIAQSQSGTGKTAVFSMGILQ 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+   +  +    L+L PTRELA Q        G   N+     IGG       ++L+ 
Sbjct: 90  MLDTTSSDTQA---LVLSPTRELAEQTQKVILALGDFMNVQCHACIGGKSIGEDIRRLDY 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   N+++LVIDEAD ML+ GF   I +I   +P + Q +
Sbjct: 147 GVQVVSGTPGRVFDMIRRRNLRTRNLQMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVV 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+  +++ F+  P +I V     T E I+  FVA   +  K   L       
Sbjct: 207 LISATMPQEVLDMTKKFMNMPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL--YD 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  ++++A
Sbjct: 265 TLTVTQAVIFCNTKRKVDWLTAKMREVNFTVSSMHGDMPQKERDAIMEEFRSGRSRVLIA 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+  RGLD+  V  V  +D+PN  E YIHRIGR+GR GR G A   V  +D++ +  IE
Sbjct: 325 TDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDVRILRDIE 384

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ +
Sbjct: 385 QYYSTQIDEMPMNITDM 401


>gi|331268829|ref|YP_004395321.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum BKT015925]
 gi|329125379|gb|AEB75324.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum BKT015925]
          Length = 476

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 140/431 (32%), Positives = 240/431 (55%), Gaps = 17/431 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +  LS +++  +   GY  PT +Q K IP+ L+  D+   +QTG+GKTASF +P+ 
Sbjct: 1   MNFKEFNLSNEILKTIQMLGYKSPTEVQEKVIPIALKDKDIIVKSQTGSGKTASFGIPVC 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++    +   P+ LIL PTRELA Q+ ++    G+   +    + G  P   Q  +L+
Sbjct: 61  EKVKLENKK---PQALILTPTRELAVQIKEDISNIGRFKKIKCVAVYGKEPVSIQKNQLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR  DH  +G + ++++  L+IDEAD+ML+MGFI  ++++   +P  R T
Sbjct: 118 QRVHIVVGTPGRTFDHIEKGNMELSDVRYLIIDEADKMLNMGFIDQVEDVIKSLPKDRVT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ + ++K+   ++ +P++IE++  + T + I       Y   S +   L   + 
Sbjct: 178 MLFSATLEERIEKLCVKYMNDPEKIEIDKKNVTTDII---EQEYYDVESDRKFSLLNKII 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +   + IIFCN K  V ++   ++ +GF   A+HG ++Q+ R++++  FK G    +V
Sbjct: 235 YTERPDSCIIFCNTKAEVGSIAVKMKNKGFDTKALHGGMEQKDRLEVIQEFKRGRFPFLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++ HV N++VP   E+Y+HRIGRTGRAG  GK+ T V + + +   +I
Sbjct: 295 ATDVAARGIDIEEITHVINYEVPAEKESYVHRIGRTGRAGHKGKSITFVCEYEDRKFKSI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQH--NHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           E+ I   V           P  E+++  +      RK  P  +K    +  KK     K 
Sbjct: 355 EEYIGYSVPKKEI------PSEEEVNQGRELFREKRKVRPKLKKDKSHEINKK---ITKI 405

Query: 419 HIPLKESEKIS 429
           HI   + +KI 
Sbjct: 406 HINAGKKKKIR 416


>gi|302696869|ref|XP_003038113.1| hypothetical protein SCHCODRAFT_63532 [Schizophyllum commune H4-8]
 gi|300111810|gb|EFJ03211.1| hypothetical protein SCHCODRAFT_63532 [Schizophyllum commune H4-8]
          Length = 396

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L   ++  +    + KP+ IQ + I  + Q  DV   AQ+GTGKTA+F + +L 
Sbjct: 24  TFDDLNLKEDLLRGIYAYNFEKPSAIQQRAILPITQGRDVIAQAQSGTGKTATFSISILQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     VR  + L+L PTRELA Q+       G   N+     IGG       +KLE 
Sbjct: 84  SIDVT---VRETQALVLSPTRELATQIQSVVLALGDYMNVQCHACIGGTSVGEDIRKLEY 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 141 GQHVVSGTPGRVFDMIRRRSLRTRNIKMLVLDEADELLNKGFKDQIYDVYRYLPPATQVV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  ++ ++++ F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 201 LLSATLPYDVLEMTQKFMTDPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDL--YD 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I++ F+ GT ++++ 
Sbjct: 259 TLTITQAVIFCNTRRKVDWLTEKMRQSNFTVSSMHGEMVQKERDAIMAEFRAGTSRVLIT 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  IE
Sbjct: 319 TDVWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTVDDVRILRDIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  + + L
Sbjct: 379 QFYSTQIDEMPVNAAEL 395


>gi|296533085|ref|ZP_06895723.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
 gi|296266590|gb|EFH12577.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
          Length = 389

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 149/370 (40%), Positives = 217/370 (58%), Gaps = 5/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA LGL+  ++ A+   GY  PTPIQ + IP VL   D+ GIAQTGTGKTA+F LP+L 
Sbjct: 3   DFAALGLAEPLLRALTQEGYTTPTPIQAQAIPHVLAGRDLLGIAQTGTGKTAAFALPVLH 62

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L   +A          IL PTRELA+Q+ DN   YG+   L+ A++ GG+    Q + L
Sbjct: 63  HLADRKAPAPRGGCRALILSPTRELASQIHDNIRAYGRFLGLSSAVIFGGVGARPQVEAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DVL+ TPGR+ DH   G   +  +E+LV+DEAD+MLD GF P ++ ++S++   RQ
Sbjct: 123 RRGVDVLVATPGRLQDHVQTGAAKLQGVEVLVLDEADQMLDRGFWPAVKRLSSVMSKNRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM  E+ K++   L++P ++ V   ++TAE IE   +   A   +        +
Sbjct: 183 TLFFSATMPAEIAKIAAEMLKDPAKVSVTPVATTAERIEQKLIHIDASQKRVL---LSEM 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  +   ++F   K     +   L   G +  AIHG+  Q  R + L+ F+ G   ++
Sbjct: 240 LRQPGIGRALVFARTKHGADRVTKHLNADGIAAHAIHGDRSQGQRERALAEFRTGRAPIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RG+D+  V HVF FD+P+  E Y+HRIGRT RAG  G+A    A +++  + A
Sbjct: 300 VATDIASRGIDVDGVTHVFQFDLPDTPEAYVHRIGRTARAGASGEAIAFCAPDEVAKLKA 359

Query: 360 IEKLIEKKVD 369
           +EKLI  K+ 
Sbjct: 360 VEKLIAMKIP 369


>gi|134046209|ref|YP_001097694.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           maripaludis C5]
 gi|132663834|gb|ABO35480.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
           C5]
          Length = 541

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 138/387 (35%), Positives = 223/387 (57%), Gaps = 9/387 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
            F +LGLS +++ A+   G+  PTPIQ + IP++++   D+ G AQTGTGKTA+F +P+L
Sbjct: 3   SFKNLGLSDEILEALEKKGFTTPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++     +    LIL PTRELA QVA+  +    +  L V  + GG   + Q ++L 
Sbjct: 63  ETIDESSRNTQA---LILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIRELR 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGRILDH +R  + + N+  +V+DEAD ML+MGFI  ++ I   V   ++ 
Sbjct: 120 RGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTEKRM 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ D + K+++N+++    I+V     T         + Y  +S+    L   + 
Sbjct: 180 LLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLT---DQSFYEIHSRDKFELLSRII 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +    G+IFC  K +V  +   L ++G++   +HG++ Q  R K L  FK   I ++V
Sbjct: 237 DLEKEFYGLIFCKTKADVDEVSSRLNEKGYAAEGLHGDMTQAQREKTLDKFKGRKINVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV N+D+P   E+Y+HRIGRTGRAG+ G A T V   + +    I
Sbjct: 297 ATDVAARGIDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKFKYI 356

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKI 385
           +K+ + ++  + +      +     KI
Sbjct: 357 QKIAKTEIRKEEVPDVKDIIGAKKRKI 383


>gi|224369411|ref|YP_002603575.1| RhlE2 [Desulfobacterium autotrophicum HRM2]
 gi|223692128|gb|ACN15411.1| RhlE2 [Desulfobacterium autotrophicum HRM2]
          Length = 460

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 165/439 (37%), Positives = 252/439 (57%), Gaps = 27/439 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL  +++ AV   GY++PTPIQI+ IP +L   D+   AQTGTGKT +F LP++
Sbjct: 1   MSFEELGLRAELIKAVKTKGYIEPTPIQIRVIPAILNGQDILARAQTGTGKTDAFALPIV 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL +G+A  R PR L+L PTRELA QV ++ + Y +  +L   ++ GG+    Q  +L+
Sbjct: 61  EILARGKAHRRHPRALVLTPTRELALQVGESIKAYARRVSLRCTVVYGGVNVNPQIDRLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           RG D+L+ TPGR+LD     + +  + IE LV DEADRMLD+GF   I  I  LVP  R+
Sbjct: 121 RGVDILVATPGRLLDLAAFNRDVKLSKIEFLVFDEADRMLDLGFSDEISQILELVPQDRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT T +++ +++  L+ P++IEV   ++ AE+I            ++  +     
Sbjct: 181 TMLFSATYTRQIRDLADKMLKTPEQIEVTPNTTVAESIVQKVHLVEKSNKRELLIHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  ++F   K     L   L +   S  A+HGN  Q  R + L  FK G I+++
Sbjct: 238 ITRSDWRQVLVFTRTKHGANKLAERLAQVKISAAALHGNKSQSFRTRTLQEFKNGEIRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + HV N+D+P+ AE+Y+HRIGRTGRAG  G A +LV+KE+   + +
Sbjct: 298 VATDVAARGLDITGLPHVVNYDMPSVAEDYVHRIGRTGRAGIQGVAVSLVSKEEKVFLKS 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA-------RKNNPIPQKSTGFDRR--- 409
           +E L+E+K+            P+E +     + A       R ++PI ++      +   
Sbjct: 358 VESLLEQKI------------PVETVKGYTVDSAVPSFVLLRPDSPISEQRADKGLKEIV 405

Query: 410 -KKNYSSQKSHIPLKESEK 427
            K+N S + S   LK   K
Sbjct: 406 SKRNASKKSSKPGLKIRSK 424


>gi|325297782|ref|YP_004257699.1| DEAD/DEAH box helicase domain-containing protein [Bacteroides
           salanitronis DSM 18170]
 gi|324317335|gb|ADY35226.1| DEAD/DEAH box helicase domain protein [Bacteroides salanitronis DSM
           18170]
          Length = 418

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 130/418 (31%), Positives = 220/418 (52%), Gaps = 7/418 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   V+ A+    + + TP+Q +TIP++L+  D+ G+AQTGTGKTA+++LP++
Sbjct: 1   MKFTELNLEESVLDALDAMNFKECTPVQEQTIPVILEGRDLIGVAQTGTGKTAAYLLPVI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L KG         +I+ PTRELA Q+    E +     ++   + GG       ++ +
Sbjct: 61  NQLSKGGYPADAINCVIMAPTRELAQQIDQQMEGFSYFMPVSSVAIYGGNDGIRFEQEKK 120

Query: 121 RGA---DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 DV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++++ L +P  +++       +       A Y  Y  +   + +
Sbjct: 181 RQTIMFSATMPAKIQQLAQSILHDPAEVKLAVSKPADKI----IQAAYICYEAQKLGIIE 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  Q   +  IIF + K  V  +  +L++   +V  +H +++Q  R +I+  F+ G I 
Sbjct: 237 SLFRQQEPERVIIFASSKLKVKEVTKALKRLKLNVGEMHSDLEQSQRDEIMHEFRNGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V++ +    
Sbjct: 297 MLVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGCAITFVSENEQTRF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
             IE  + K++  L         P+     +  N          K   F+ R+     
Sbjct: 357 KQIEDFLGKEIYKLPVPAELGEAPVYAPHTSSRNKPGNKGKGGWKKRSFNNRRPQKKG 414


>gi|323499260|ref|ZP_08104237.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326]
 gi|323315648|gb|EGA68682.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326]
          Length = 646

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 155/462 (33%), Positives = 246/462 (53%), Gaps = 35/462 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L+  ++ A+   G+V PTPIQ  +IP +++  D  G AQTGTGKTA+F LP+L 
Sbjct: 7   QFSDLALNDSILSALEGMGFVSPTPIQAASIPHLMEGVDALGKAQTGTGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            L+ G+ +   P+ ++L PTRELA QVA   +  G+N +    L I G      Q + L+
Sbjct: 67  KLDLGQRK---PQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGTSIVDQMRALK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ D  NR +L ++ +   V+DEAD ML+MGF+  +  I    P + Q 
Sbjct: 124 HGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTAIMEHAPESAQR 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   L+ + E FL+ P  I+V   + T + +E  F         +        +
Sbjct: 184 VLFSATMPPMLKNIVERFLREPVTIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLETE 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D     I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++V
Sbjct: 244 ETD---ASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    ++ +  I
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E++ +  ++ +        P  +K+  A+                  +      ++K H 
Sbjct: 361 ERVTKSSMEEIQ------LPHRDKVAEAR----------------LAKLGAELETEKEHK 398

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
            L++  ++ +  Q+  E DA +L       A +L + +GK  
Sbjct: 399 ALEKFSELVEKLQESLELDAATLA------AILLKRQQGKRP 434


>gi|262275389|ref|ZP_06053199.1| ATP-dependent RNA helicase RhlE [Grimontia hollisae CIP 101886]
 gi|262220634|gb|EEY71949.1| ATP-dependent RNA helicase RhlE [Grimontia hollisae CIP 101886]
          Length = 436

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 159/430 (36%), Positives = 242/430 (56%), Gaps = 10/430 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F +LGLS  ++ A+ + GY  P+PIQ++ IP VL+  DV   AQTGTGKTA FVLP+ 
Sbjct: 1   MGFTELGLSAPILRAIQEKGYDTPSPIQMQAIPAVLEGKDVMAAAQTGTGKTAGFVLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   GR R    R LIL PTRELAAQ+ +N   Y ++  L  +++ GG+    Q   L
Sbjct: 61  ERLSNGGRTRPNHVRALILTPTRELAAQIHENAVVYSRHLPLRSSVVFGGVKINPQMMAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD + +  +  + +E+LV+DEADRMLDMGF   I+ I  L+P  RQ
Sbjct: 121 RKGTDILVATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFFRDIKKILDLLPKNRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT +DE++ +++  + NP  I   + +    T        Y    KK   +   L
Sbjct: 181 SLLFSATFSDEIRNLAKGLVNNPVEI---SVTPANSTARTVEQCIYPADKKKKPAMLSKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  ++F   K     L   L ++G +   IHGN  Q +R K L++FK G ++++
Sbjct: 238 IKDGDWKQVLVFTRTKHGANKLARFLNEEGITAAPIHGNKSQSARTKALADFKTGDVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P+ AE+Y+HRIGRTGRAG  GKA +LV  ++   +  
Sbjct: 298 VATDIAARGIDIPQLPQVVNFEIPHVAEDYVHRIGRTGRAGEPGKAISLVCADEADDLFG 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           IE+LI++ +     +L+   P    P + +D       +       +     + K+N  +
Sbjct: 358 IERLIQQLLPR--QELAGFKPTNPLPEKALDTRPIKPKKPKKAKKPQPKSAGQGKENKPT 415

Query: 416 QKSHIPLKES 425
                P ++ 
Sbjct: 416 TNKPTPRRKP 425


>gi|294901515|ref|XP_002777392.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239885023|gb|EER09208.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 531

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 128/380 (33%), Positives = 202/380 (53%), Gaps = 2/380 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F   G    ++  +  AG+ KP+PIQ++  P+ +   D+ GIA+TG+GKT +F+LP +
Sbjct: 117 VTFEQAGFPDYILHEIKQAGFEKPSPIQVQGWPVAMSGRDMVGIAETGSGKTLAFLLPAI 176

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA Q  +   ++G++  +    + GG P   Q + 
Sbjct: 177 VHINAQPYLQRGDGPIVLVLAPTRELAVQTQEECNRFGRSSRIRNTCVYGGTPRGPQARA 236

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G ++ I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ ITS V   R
Sbjct: 237 LANGVEICIATPGRLIDFLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKITSQVRPDR 296

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLL+SAT   E+Q ++ +  +           S   +          Q  +K   L+QL
Sbjct: 297 QTLLWSATWPKEIQGLARDLCREEPVHINVGSMSLRASHNVTQYVDIVQDYEKKDKLKQL 356

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+        +IF + K+   +L   L   G+   +IHG+  Q  R  +L  FK G   +
Sbjct: 357 LERIMDGSKIVIFTDTKRAADDLTRMLRMDGWPALSIHGDKKQEERDWVLQEFKSGKSPI 416

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+D+A+RGLD+ D+ HV N+D P + E+Y+HRIGRTGRAG  G A++    +  K   
Sbjct: 417 MIATDVASRGLDVKDLRHVINYDFPGQIEDYVHRIGRTGRAGAKGSAYSFFTPDKYKLAK 476

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    +  +L  +
Sbjct: 477 DLIGVLREAEQAVPPELEKI 496


>gi|119898413|ref|YP_933626.1| ATP-dependent RNA helicase [Azoarcus sp. BH72]
 gi|119670826|emb|CAL94739.1| ATP-dependent RNA helicase [Azoarcus sp. BH72]
          Length = 650

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 146/372 (39%), Positives = 221/372 (59%), Gaps = 6/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ A+ D GY  P+PIQ   IP +L  HD+ G AQTGTGKTA+F LPML
Sbjct: 5   VTFADLALPAPLLQALADVGYETPSPIQAACIPHLLAGHDILGEAQTGTGKTAAFALPML 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L+    R   P+ L+L PTRELA QVA+ F+KY  +      L +  G     Q ++L
Sbjct: 65  ARLDLADRR---PQVLVLTPTRELAIQVAEAFQKYAHHLRDFHVLPLYGGQSMVVQLRQL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR++DH  RG L ++ +  LV+DEAD ML MGFI  ++ I    P  RQ
Sbjct: 122 SRGAQIIVGTPGRVMDHLERGSLKLDTLSGLVLDEADEMLRMGFIEDVEWILEHTPSGRQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM D +++V+   L+ PK +++   +ST   I   +             L ++L
Sbjct: 182 TALFSATMPDAIRRVAHQHLREPKEVKIRAATSTVSAISQRYWLVRGVDK--LDALTRIL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++ +   I+F   K     L   LE +G++  A++G++ Q  R +++   K G++ ++
Sbjct: 240 DAEEKLDAAIVFVRTKTATTELADKLEARGYAAAALNGDMTQGLRERVIEQLKNGSLDIV 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV N+D+P   E Y+HRIGRTGRAGR G A   VA  + + + A
Sbjct: 300 VATDVAARGIDVPRISHVINYDIPYDTEAYVHRIGRTGRAGREGSAILFVAPRESRMLKA 359

Query: 360 IEKLIEKKVDWL 371
           IE+   + ++ +
Sbjct: 360 IERATRQPIEAI 371


>gi|295394794|ref|ZP_06805009.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972390|gb|EFG48250.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 586

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 152/388 (39%), Positives = 225/388 (57%), Gaps = 11/388 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L  +V  AV D GY  P+PIQ KTIP +LQ  DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 16  FSDFDLDERVARAVADLGYESPSPIQAKTIPFLLQGRDVIGLAQTGTGKTAAFALPLLSS 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +  GR R   P  LIL PTRELA QVA+    Y  +      L I  G  +  Q   L+R
Sbjct: 76  I-AGRERPTSPLALILAPTRELAIQVAEALTSYATHLGDFSVLPIYGGQSYTPQISGLKR 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  RG L ++++E LV+DEAD ML MGF   I+ I +     RQ  
Sbjct: 135 GAHVVVGTPGRVIDHIKRGTLDLSHVEHLVLDEADEMLKMGFQEDIEEIFAKTNPDRQVA 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   + +++  +L +P  + +   ++T+  I   ++     +          ++ 
Sbjct: 195 LFSATMPASIHRITGQYLNDPAEVRIQAKTTTSANIRQRYLTVMHSHKLDALTRILEVEK 254

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D +   I+F   K+    L   L+ +GFS  AI+G+I Q  R + +   + G+I ++VA
Sbjct: 255 YDGI---IMFVRTKQETEELADKLKARGFSAAAINGDIPQVVRERTVEALRSGSIDILVA 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V NFD+P+  E+Y+HRIGRTGRAGR G+A   V   + + + AIE
Sbjct: 312 TDVAARGLDVERISLVVNFDIPHDTESYVHRIGRTGRAGRTGEAILFVTPRENRLLKAIE 371

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
           K   +KV+ L      + P +E++ + +
Sbjct: 372 KATRQKVEPL------VMPTVEELTVTR 393


>gi|170759986|ref|YP_001785987.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406975|gb|ACA55386.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 425

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 172/428 (40%), Positives = 258/428 (60%), Gaps = 11/428 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   +  A+ + GY K TPIQ K+IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGRDLVGCAQTGTGKTAAFAVPVL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L K +   + PRT+   +L PTRELA Q+ ++FE YGK  NL  A++ GG+    Q K
Sbjct: 61  QNLSKDKKVNKDPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+LI TPGR+LD FN+  + + NIE  V+DEADRMLDMG I  ++ I S +P  
Sbjct: 121 ALREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKA 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  E+ K+ ++ +++P R+EV   SST +TI       Y    K+   L +
Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTI---TQEVYHVRKKQKRALLK 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++++ ++F   K+    +   L + G    AIHGN  Q +R + L+NFKEG I+
Sbjct: 238 HLLKDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HVFN+++P+  E Y+HRIGRTGRAG  G A +    E+ K +
Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDIPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357

Query: 358 DAIEKLIEKKVDWL---NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS--TGFDRRKKN 412
            AIEKLI K++  +      +  +N    K +  + N  +K++   Q       + R+KN
Sbjct: 358 KAIEKLINKEIPVVEDHPYKIRHINEGEIKKENTKDNFNKKSSTKRQGGNWRYSNNRRKN 417

Query: 413 YSSQKSHI 420
            S++++  
Sbjct: 418 NSTKQTKK 425


>gi|118590800|ref|ZP_01548201.1| ATP-dependent RNA helicase protein [Stappia aggregata IAM 12614]
 gi|118436776|gb|EAV43416.1| ATP-dependent RNA helicase protein [Stappia aggregata IAM 12614]
          Length = 436

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 161/419 (38%), Positives = 236/419 (56%), Gaps = 13/419 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGLS  +V AV + GY  PTPIQ K IPL+L+  D+ G+AQTGTGKTA+F LP++ 
Sbjct: 3   DFQSLGLSNGLVTAVSENGYDTPTPIQQKAIPLILEGRDLMGLAQTGTGKTAAFGLPLID 62

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L+  + +     T   IL PTREL  Q+A N   + K+  L V+ ++GG+    Q K+L
Sbjct: 63  RLQAEKKKAVPKGTRALILAPTRELVNQIAKNLISFLKHTPLRVSSVVGGVSINGQIKRL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD  +R  + +     LV+DEAD+MLD+GFI  ++ I  LV   RQ
Sbjct: 123 SKGTDILVATPGRLLDLVDREAIDLRTASYLVLDEADQMLDLGFIHALRRIAGLVADKRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  ++ ++++++L+NP+R+     +   +T +    + +              
Sbjct: 183 TLLFSATMPKQINELAQSYLRNPERV---EVAPAGKTADKVTQSVHFMDKNSKGDFLVDQ 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++FC  K     L   L   G S  +IHGN  Q  R + +   +EGTI ++
Sbjct: 240 LRDKPDGLSLVFCRTKHGAERLMRKLSHSGISAGSIHGNKSQNQRDRAIKELREGTINVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V HV+NF++P  AE Y+HRIGRT RAG  G+A  L A E+I     
Sbjct: 300 VATDVAARGIDIPGVSHVYNFELPEVAEAYVHRIGRTARAGAEGEAIALCAPEEIGLFRQ 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           IEKLI  ++    G++    PP+     A    A++     +  +G    KK +  Q S
Sbjct: 360 IEKLIGIEITVAGGEI----PPMS----AASGRAKRGGSNNRNGSGKPASKKPFRKQSS 410


>gi|288925923|ref|ZP_06419853.1| ATP-dependent RNA helicase RhlE [Prevotella buccae D17]
 gi|288337347|gb|EFC75703.1| ATP-dependent RNA helicase RhlE [Prevotella buccae D17]
          Length = 375

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 151/378 (39%), Positives = 218/378 (57%), Gaps = 5/378 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +S  ++ A+    Y  PTPIQ K IP+ L+  D+ GIAQTGTGKTA+F +P++
Sbjct: 1   MTFNELNISKPILKALELKEYETPTPIQQKAIPIGLEGRDLLGIAQTGTGKTAAFAIPII 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                     R R  + LIL PTRELA Q+ + F+ Y K   L   ++ GG+    Q K+
Sbjct: 61  QQLAKSADDNRRRDIKALILTPTRELAIQIEECFKDYSKFTRLRCCVIFGGVSQNGQVKE 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG D+LI TPGR+LD  ++  + + +I   V+DEADRMLDMGFI  I+ +  L+P  R
Sbjct: 121 LERGVDILIATPGRLLDLISQHIITLEHICHFVLDEADRMLDMGFIHDIKKLIPLLPKRR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM + + K+S++ L  P R+EV   SS  +TIE               +    
Sbjct: 181 QTLLFSATMPETIAKLSKSLLYKPARVEVAPVSSVVDTIEQRLYFVEKPQKTDLLVSVLK 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  ++ ++F   K     +   L+ +     AIHGN  Q +R + L+NFK G  ++
Sbjct: 241 NDGN---RSALVFSRTKHGADRIARKLKARHIECEAIHGNKSQNARQRALTNFKSGKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI ++  V N+D+P+ AE Y+HRIGRTGRAG  G A T   +++   + 
Sbjct: 298 IVATDIAARGIDIANLQMVINYDLPDVAETYVHRIGRTGRAGNSGVALTFCTQDERPMVR 357

Query: 359 AIEKLIEKKVDWLNGDLS 376
            I+KL  KK+      L 
Sbjct: 358 DIQKLTGKKLPIAQSPLK 375


>gi|195542171|gb|ACF98296.1| eIF-4A [Pennisetum glaucum]
          Length = 407

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 200/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G+   ++  +   G+ KP+ IQ + +  ++   DV   AQ+GTGK++   L +  
Sbjct: 35  SFDQMGIKDDLLRGIYGYGFEKPSAIQQRAVLPIINGRDVIAQAQSGTGKSSMISLTVCQ 94

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I++     V+    LIL PTRELA+Q        G   N+ V   IGG       ++LE 
Sbjct: 95  IVDTAVREVQA---LILSPTRELASQTEKVMLAVGDYLNIQVHACIGGKSISEDIRRLEN 151

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML  GF   I ++   +P   Q +
Sbjct: 152 GVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDEADEMLSRGFKDQIYDVYRYLPPELQVV 211

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+  P RI V     T E I+  FVA   +  K   L       
Sbjct: 212 LISATLPHEILEMTSKFMTEPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL--YD 269

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   +    F+V A+HG++ Q+ R  I++ F+ G  ++++ 
Sbjct: 270 TLTITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQQERDAIMTEFRSGATRVLIT 329

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V K+DI+ +  IE
Sbjct: 330 TDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRKDDIRILRDIE 389

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 390 QYYSTQIDEMPMNVADL 406


>gi|167569331|ref|ZP_02362205.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786]
          Length = 411

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 168/387 (43%), Positives = 229/387 (59%), Gaps = 10/387 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+ +++ A+ D GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L    +    P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q 
Sbjct: 72  RLLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG +VLI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 AELRRGVEVLIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   ++TA  +            +   +  
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNATATNVTQIVYDVAEGDKQAAVVKL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                   +K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 ---IRDRALKQVIVFCNSKIGASRLARQIERDGIVASAIHGDRSQSERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIVELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKK--VDWLNGDLSSLNPP 381
           +  IEKLI++   ++ L  DL    PP
Sbjct: 369 LADIEKLIKRALPLEALELDLPRHRPP 395


>gi|5410326|gb|AAD43033.1| RNA helicase [Homo sapiens]
          Length = 1031

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 133/447 (29%), Positives = 221/447 (49%), Gaps = 14/447 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 432

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+      +       V +  G    E   +  
Sbjct: 433 HIMDQRSLEEGEGPLAVIMTPTRELALQIPKGVRSFKTLGLRVVCVYGGTGISEQIAELK 492

Query: 120 ERGADVLICTPGRILDH--FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                ++      I      +     +  +  +V+DEADRM DMGF P +  I   V   
Sbjct: 493 RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPD 552

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSAT    ++ ++   L  P  ++V   S     +E        +  KK   L +
Sbjct: 553 RQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQV--IVIEEEKKFLKLLE 610

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL       + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT +
Sbjct: 611 LLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCK 670

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++ 
Sbjct: 671 LLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYA 730

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   +   +
Sbjct: 731 GDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETE 783

Query: 418 SHIPLKESEKISKLQQDIQENDADSLG 444
             +   E +K+ K    +Q++D +   
Sbjct: 784 QAL-ANERKKLQKAALGLQDSDDEDAA 809


>gi|302690998|ref|XP_003035178.1| hypothetical protein SCHCODRAFT_14350 [Schizophyllum commune H4-8]
 gi|300108874|gb|EFJ00276.1| hypothetical protein SCHCODRAFT_14350 [Schizophyllum commune H4-8]
          Length = 449

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 148/411 (36%), Positives = 222/411 (54%), Gaps = 7/411 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL   ++ A+    +  PT IQ + +P  L+  D+ G+A TG+GKTA+F LP+L 
Sbjct: 15  TFKSLGLIDPLLEALDKMSFKAPTEIQAQALPHALEGRDIIGVASTGSGKTAAFALPILQ 74

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L      +      +L PTRELA Q++  FE  G    +  A+++GG    AQ   L +
Sbjct: 75  KLWDDPKGLFA---CVLAPTRELAYQISQQFEALGSAMGVRCAVIVGGTDIMAQKVALAK 131

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+ DH  + K      I+ LV+DEADR+LDM F P I  I  ++P  R T
Sbjct: 132 RPHIVVATPGRLDDHLEKTKGFNLRGIKFLVLDEADRLLDMDFGPVIDKILKVIPKERTT 191

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+    L NP R+EVNT   T +++   ++       K+   L   L 
Sbjct: 192 YLFSATMTTKVAKLQRASLSNPVRVEVNTKYQTVDSLLQYYLLMPL---KEKDTLLVYLA 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +     + IIF     +   L   L   GF    +HG + Q  R+  LS FK G  +++V
Sbjct: 249 NTLAQNSIIIFTRTVNDAARLSIILRTLGFPAVPLHGQLSQSQRLGALSKFKSGGRKVLV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GK+ T V + D++ I  I
Sbjct: 309 ATDVASRGLDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRAGKSITFVTQYDVEFIMRI 368

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           EK+I KK++    D   ++   E++  A    A +     +   G  +R++
Sbjct: 369 EKVIGKKMELWPTDEEEVSLLRERVGEAARVAAAEMRDQAKAGHGGKKRRR 419


>gi|227542566|ref|ZP_03972615.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227181764|gb|EEI62736.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 718

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 136/373 (36%), Positives = 216/373 (57%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGL   ++ AV   G+  P+PIQ +TIP +L   DV G+AQTGTGKTA+F LP++
Sbjct: 110 LSFDKLGLPSDILEAVKKVGFETPSPIQARTIPALLDGRDVVGLAQTGTGKTAAFALPII 169

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++K       P+ L+L PTRELA QVAD F+++  +      L I  G  +  Q   L
Sbjct: 170 ARIDKSNRS---PQALVLAPTRELALQVADAFQEFADHVGGINVLPIYGGQAYGIQLSGL 226

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR++DH  +G L +++++ LV+DEAD ML+MGF   ++ I    P  +Q
Sbjct: 227 RRGAHIIVGTPGRVIDHLKKGSLDISHLDYLVLDEADEMLNMGFQEDVERILEDTPDKKQ 286

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM + ++++S+ +L +P  + V   + T   I   ++       +        +
Sbjct: 287 VALFSATMPNAIRRLSQQYLDDPYEVTVKAETRTNTNISQRYLNVAH---RNKLDALTRI 343

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  IIF   K     L   L  +GFS  AI+G+I Q+ R + +   ++G + ++
Sbjct: 344 LEVTEFEAMIIFVRTKYETEELAEKLRARGFSAQAINGDIAQQQRERTVDQLRDGRLDIL 403

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P+  E+YIHRIGRTGRAGR G+A   V   + + + +
Sbjct: 404 VATDVAARGLDVDRISHVLNYDIPHDTESYIHRIGRTGRAGRTGEAILFVTPRERRMLRS 463

Query: 360 IEKLIEKKVDWLN 372
           IE++    ++ + 
Sbjct: 464 IERVTNATLEEMQ 476


>gi|227487924|ref|ZP_03918240.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227092130|gb|EEI27442.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 718

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 136/373 (36%), Positives = 216/373 (57%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGL   ++ AV   G+  P+PIQ +TIP +L   DV G+AQTGTGKTA+F LP++
Sbjct: 110 LSFDKLGLPSDILEAVKKVGFETPSPIQARTIPALLDGRDVVGLAQTGTGKTAAFALPII 169

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++K       P+ L+L PTRELA QVAD F+++  +      L I  G  +  Q   L
Sbjct: 170 ARIDKSNRS---PQALVLAPTRELALQVADAFQEFADHVGGINVLPIYGGQAYGIQLSGL 226

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR++DH  +G L +++++ LV+DEAD ML+MGF   ++ I    P  +Q
Sbjct: 227 RRGAHIIVGTPGRVIDHLKKGSLDISHLDYLVLDEADEMLNMGFQEDVERILEDTPDKKQ 286

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM + ++++S+ +L +P  + V   + T   I   ++       +        +
Sbjct: 287 VALFSATMPNAIRRLSQQYLDDPYEVTVKAETRTNTNISQRYLNVAH---RNKLDALTRI 343

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  IIF   K     L   L  +GFS  AI+G+I Q+ R + +   ++G + ++
Sbjct: 344 LEVTEFEAMIIFVRTKYETEELAEKLRARGFSAQAINGDIAQQQRERTVDQLRDGRLDIL 403

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P+  E+YIHRIGRTGRAGR G+A   V   + + + +
Sbjct: 404 VATDVAARGLDVDRISHVLNYDIPHDTESYIHRIGRTGRAGRTGEAILFVTPRERRMLRS 463

Query: 360 IEKLIEKKVDWLN 372
           IE++    ++ + 
Sbjct: 464 IERVTNATLEEMQ 476


>gi|150403372|ref|YP_001330666.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           maripaludis C7]
 gi|150034402|gb|ABR66515.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
           C7]
          Length = 546

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 139/387 (35%), Positives = 223/387 (57%), Gaps = 9/387 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
            F +LGLS +++ A+   G+  PTPIQ + IP++++   DV G AQTGTGKTA+F +P+L
Sbjct: 3   SFKNLGLSDEIIKALEKKGFTNPTPIQEQAIPILIEGKRDVVGQAQTGTGKTAAFGIPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++     +    LIL PTRELA QVA+  +    +  L V  + GG   + Q ++L+
Sbjct: 63  ETIDESSRNTQA---LILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIRELK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGRILDH +R  + + N+  +V+DEAD ML+MGFI  ++ I   V   ++ 
Sbjct: 120 RGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTEKRM 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ D + K+++N+++    I+V     T         + Y  +S+    L   + 
Sbjct: 180 LLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLT---DQSYYEIHSRDKFELLSRII 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +    G+IFC  K +V  +   L ++G++   +HG++ Q  R K L  FK   I ++V
Sbjct: 237 DVEKEFYGLIFCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLDKFKARKINVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV N+D+P   E+Y+HRIGRTGRAG+ G A T V   + +    I
Sbjct: 297 ATDVAARGIDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKFKYI 356

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKI 385
           +K+   ++  + +      +     KI
Sbjct: 357 QKIANTEIRKEEVPDVKDIIGAKKRKI 383


>gi|160873699|ref|YP_001553015.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|304411613|ref|ZP_07393226.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307306611|ref|ZP_07586353.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|160859221|gb|ABX47755.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|304350140|gb|EFM14545.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306910579|gb|EFN41008.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|315265932|gb|ADT92785.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 640

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 141/372 (37%), Positives = 220/372 (59%), Gaps = 8/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ A+ + GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L 
Sbjct: 7   TFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            +         P+ L+L PTRELA QVA+ F  Y K       L I  G   + Q   L+
Sbjct: 67  KVTSQ----TTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG L +++++ LV+DEAD ML MGFI  I+ I    P  RQ 
Sbjct: 123 RGPQVIVGTPGRVMDHMRRGTLKLDSLQALVLDEADEMLKMGFIDDIEWILEHTPSERQL 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +++++V+   L+NP  + + +  +T E+IE  FV        +  +    ++
Sbjct: 183 ALFSATMPEQIKRVANQHLRNPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLEVE 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + +   IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++
Sbjct: 243 NTEGV---IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +GHV N+D+P  AE Y+HRIGRTGRAGR G A   V   +++ +  I
Sbjct: 300 ATDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTI 359

Query: 361 EKLIEKKVDWLN 372
           E+    ++  + 
Sbjct: 360 ERSTNSRISPMK 371


>gi|126175951|ref|YP_001052100.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|152999102|ref|YP_001364783.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|217971789|ref|YP_002356540.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|125999156|gb|ABN63231.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
 gi|151363720|gb|ABS06720.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|217496924|gb|ACK45117.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 640

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 141/372 (37%), Positives = 220/372 (59%), Gaps = 8/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ A+ + GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L 
Sbjct: 7   TFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            +         P+ L+L PTRELA QVA+ F  Y K       L I  G   + Q   L+
Sbjct: 67  KVTSQ----TTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG L +++++ LV+DEAD ML MGFI  I+ I    P  RQ 
Sbjct: 123 RGPQVIVGTPGRVMDHMRRGTLKLDSLQALVLDEADEMLKMGFIDDIEWILEHTPSERQL 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +++++V+   L+NP  + + +  +T E+IE  FV        +  +    ++
Sbjct: 183 ALFSATMPEQIKRVANQHLRNPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLEVE 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + +   IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++
Sbjct: 243 NTEGV---IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +GHV N+D+P  AE Y+HRIGRTGRAGR G A   V   +++ +  I
Sbjct: 300 ATDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTI 359

Query: 361 EKLIEKKVDWLN 372
           E+    ++  + 
Sbjct: 360 ERSTNSRISPMK 371


>gi|190151364|ref|YP_001969889.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307264721|ref|ZP_07546300.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189916495|gb|ACE62747.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|306869917|gb|EFN01682.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 445

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 130/367 (35%), Positives = 208/367 (56%), Gaps = 2/367 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F +L L+P+++ A+   GY +PT +Q +TIP  L   D+ G A TGTGKTA+F+LP +
Sbjct: 8   MTFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAI 67

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QVA+  + + +   L++A + GG+ ++   +  
Sbjct: 68  QHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEVF 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR++ +          +EIL+ DEADRML MGF    + I +   + + 
Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT+  EL     + + +     ++   S  E  +      +A   +    L   L
Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLK-IDAEPSRRERKKIQQWYYHADNVEHKTKLLARL 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S   M+  I+F  ++++V  L  +L K+G     + G++ Q  R + ++  KEG + ++
Sbjct: 247 ISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAITRLKEGVVNVL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI DV +V NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D K +  
Sbjct: 307 VATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGK 366

Query: 360 IEKLIEK 366
           I++  E+
Sbjct: 367 IKRYAEE 373


>gi|90408322|ref|ZP_01216486.1| ATP-dependent RNA helicase DeaD [Psychromonas sp. CNPT3]
 gi|90310553|gb|EAS38674.1| ATP-dependent RNA helicase DeaD [Psychromonas sp. CNPT3]
          Length = 579

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 137/373 (36%), Positives = 218/373 (58%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L L   ++  V + GY  P+PIQ + IP +L   DV G+AQTGTGKTA+F LP+L
Sbjct: 11  ITFNELNLPEALLKVVSEMGYETPSPIQAQCIPHLLNGKDVLGLAQTGTGKTAAFALPLL 70

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++     ++ P+ L+L PTRELA QVA+ F+ Y ++      + I  G  +  Q  +L
Sbjct: 71  ANIDLS---LKAPQVLVLAPTRELAIQVAEAFQTYSRHLAGFHVMPIYGGQSYNIQFGQL 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG  V++ TPGRI+DH  R  L ++N+  LV+DEAD ML MGFI  ++ I   +P   Q
Sbjct: 128 RRGPQVVVGTPGRIMDHLKRKTLDLSNLTTLVLDEADEMLRMGFIDDVETIMKDMPAKHQ 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM D+++++++ ++ +P  +++   +ST E IE                    +
Sbjct: 188 TALFSATMPDQIKRITKRYMNDPIEVKIKAKTSTVENIEQKCWIVRGVNK---LDALTRM 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   V L   LE +G+   A++G+++Q++R + ++  K G + ++
Sbjct: 245 LETEEFDGVIIFARTKTATVELAERLEARGYRSAALNGDMNQQTRERTIARLKSGGLDIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +  V N+D+P   E+Y+HRIGRTGRAGR GKA    A  + + + A
Sbjct: 305 VATDVAARGLDVERISLVVNYDIPTDTESYVHRIGRTGRAGRKGKAILFAAPRERRLLKA 364

Query: 360 IEKLIEKKVDWLN 372
           IE+   +++  + 
Sbjct: 365 IERATRQEITIME 377


>gi|149191365|ref|ZP_01869617.1| ATP-dependent RNA helicase [Vibrio shilonii AK1]
 gi|148834782|gb|EDL51767.1| ATP-dependent RNA helicase [Vibrio shilonii AK1]
          Length = 430

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 135/423 (31%), Positives = 217/423 (51%), Gaps = 11/423 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L L P+++  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFAELDLQPQIIEGLEKKGFEYCTPIQALALPVLLAGRDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 E    +   PR +I+ PTRELA Q+ ++ +   ++  L  AL  GG  ++ Q  
Sbjct: 70  HLLTTPEHDGRKPNQPRAIIMAPTRELAIQIQNDAKPLIESTGLKTALAYGGDSYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KLE G D+LI T GRI+D + +    +NNI+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLEEGVDILIGTCGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +  L    + T   +     F       E        +T        +   + +   L Q
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMHN-PEHVVVEPEQKTGHRIKEELFYPSNNEKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R KIL  F  G + 
Sbjct: 249 TLVEEEWPDRAIIFANTKHKCEKVWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE+ IE ++   + D    L+ L  PL  +  ++++  R+ N    + +    +++  
Sbjct: 369 PAIEEYIEHQIPVSDYDSSALLTELPAPL--VLKSRNSGQRRTNTGGSRPSNRKPQRRPR 426

Query: 414 SSQ 416
           + +
Sbjct: 427 AQR 429


>gi|260223394|emb|CBA33917.1| Putative ATP-dependent RNA helicase rhlE [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 520

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 170/457 (37%), Positives = 244/457 (53%), Gaps = 14/457 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA L L+  +  AV + GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L
Sbjct: 22  MAFAQLQLADPLARAVAEMGYTTMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFALPLL 81

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L K       P        +L PTRELA QVA   + Y K  NL  A++ GG+  + Q
Sbjct: 82  QRLMKHENASTSPARHPVRALVLLPTRELADQVAQQVKLYAKYTNLRSAVVFGGMDMKPQ 141

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L+ G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P
Sbjct: 142 TLELKAGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 201

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            TR TLLFSAT + E+++++ ++LQNP  IEV   ++TA T+E  F        +     
Sbjct: 202 KTRTTLLFSATFSPEIKRLANSYLQNPITIEVARSNATASTVEQHFYRVNDDDKRHA--- 258

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              +     +K   +F N K     L  +LE+ G    A+HG+  Q  R+K L  FK+G 
Sbjct: 259 LLQIVRSKDIKQAFVFVNSKLGCARLTRALERDGLRAAALHGDKSQDERLKALEAFKKGE 318

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDI 354
           + L+V +D+AARGLDI DV  VFN D+P  AE+Y+HRIGRTGRAG  G A + V    D 
Sbjct: 319 VDLLVCTDVAARGLDIKDVPAVFNMDIPFNAEDYVHRIGRTGRAGASGLAVSFVGGGNDA 378

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           + +  IEKLI+ K++     L ++    ++ DI           +  ++    R  ++  
Sbjct: 379 RLVADIEKLIKTKIE-----LEAVEFDEDRPDIRSQGRINDGRRMYAENGEQARGPRSEG 433

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
              S    +     ++     +       G     P 
Sbjct: 434 RGDSRGEGRGRSHSNERDDAYRTRAPREYGRPAPAPR 470


>gi|119481045|ref|XP_001260551.1| RNA helicase (Dbp), putative [Neosartorya fischeri NRRL 181]
 gi|134034066|sp|A1DGZ7|DBP2_NEOFI RecName: Full=ATP-dependent RNA helicase dbp2
 gi|119408705|gb|EAW18654.1| RNA helicase (Dbp), putative [Neosartorya fischeri NRRL 181]
          Length = 545

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 209/380 (55%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F + G    V+  V   G+ +PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 120 NFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 179

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 180 HINAQPLLAPGDGPIVLILAPTRELAVQIQTEISKFGKSSRIRNTCVYGGVPKGPQIRDL 239

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 240 SRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQ 299

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T ++SAT   E+++++ +FL +  ++ + +   +A       V   + + K+  +++ L 
Sbjct: 300 TCMWSATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLE 359

Query: 240 QSQDTMKNGIIFCNQKKN-VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   N  +     K     +   L + G+   +IHG+  Q+ R  +L+ FK G   +
Sbjct: 360 KIMENRGNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPI 419

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ D+ HV N+D PN +E+YIHRIGRTGRAG  G A T    E+ K   
Sbjct: 420 MVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSKQAR 479

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    ++  L+ +
Sbjct: 480 DLVTILTEAKQQIDPRLAEM 499


>gi|300703503|ref|YP_003745105.1| ATP-dependent RNA helicase, dead-box family [Ralstonia solanacearum
           CFBP2957]
 gi|299071166|emb|CBJ42480.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
           CFBP2957]
          Length = 495

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 163/418 (38%), Positives = 241/418 (57%), Gaps = 8/418 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F   GL P ++ A+ ++GY +PTPIQ   IP+V+   DV G AQTGTGKTA F LP++
Sbjct: 15  VTFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPII 74

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L         P        IL PTRELA QV DN  KY K   L  A++ GG+    Q
Sbjct: 75  QNLLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQ 134

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L RG ++L+ TPGR+LDH  +  + ++ + +LV+DEADRMLDMGF+P +Q I +L+P
Sbjct: 135 TEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLP 194

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCAL 234
             RQTLLFSAT + E++K++ ++L++P+ IEV   ++TA+ +          + +     
Sbjct: 195 AHRQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVH 254

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L +    Q      I+F N K     L  +LE++  +  AIHG+  Q  RM+ L  FK+G
Sbjct: 255 LLRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQG 314

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           T+ ++VA+D+AARGLDI  +  V NFD+P  AE+Y+HRIGRTGRAG  G A +L A  D 
Sbjct: 315 TVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDE 374

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           + +  IEKLI++ +      L   +P  E+          +     +     +R ++N
Sbjct: 375 RLLADIEKLIKRNLPR--EALVDFDPTGEQARERDRRERDERRNRTEIRRSRERDERN 430


>gi|207723759|ref|YP_002254157.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
 gi|207743814|ref|YP_002260206.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
 gi|206588963|emb|CAQ35925.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
 gi|206595214|emb|CAQ62141.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
          Length = 495

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 163/418 (38%), Positives = 242/418 (57%), Gaps = 8/418 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F   GL P ++ A+ ++GY +PTPIQ   IP+V+   DV G AQTGTGKTA F LP++
Sbjct: 15  VTFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPII 74

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L         P        IL PTRELA QV DN  KY K   L  A++ GG+    Q
Sbjct: 75  QNLLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQ 134

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L RG ++L+ TPGR+LDH  +  + ++ + +LV+DEADRMLDMGF+P +Q I +L+P
Sbjct: 135 TEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLP 194

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCAL 234
             RQTLLFSAT + E++K++ ++L++P+ IEV   ++TA+ +          + +     
Sbjct: 195 AHRQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVH 254

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L +    Q      I+F N K     L  +LE++  +  AIHG+  Q  RM+ L  FK+G
Sbjct: 255 LLRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQG 314

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           T+ ++VA+D+AARGLDI  +  V NFD+P  AE+Y+HRIGRTGRAG  G A +L A  D 
Sbjct: 315 TVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDE 374

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           + +  IEKLI++ +      L   +P  E+    +     +     +     +R ++N
Sbjct: 375 RLLADIEKLIKRNLPR--EALVDFDPTGEQARDRERRERDERRNRTEIRRSRERDERN 430


>gi|1170507|sp|P41380|IF4A3_NICPL RecName: Full=Eukaryotic initiation factor 4A-3; Short=eIF-4A-3;
           AltName: Full=ATP-dependent RNA helicase eIF4A-3
 gi|19699|emb|CAA43514.1| nicotiana eukaryotic translation initiation factor 4A [Nicotiana
           plumbaginifolia]
          Length = 391

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 205/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA++G+   ++  V   G+ KP+ IQ + +  ++   DV   AQ+GTGKT+   L +  
Sbjct: 19  SFAEMGIKDDLLRGVYQYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMIALTVCQ 78

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I++   + V+    LIL PTRELAAQ        G   N+     IGG       +KLE 
Sbjct: 79  IVDTKSSEVQA---LILSPTRELAAQTEKVILAIGDYINVQAHACIGGKSVGEDIRKLEH 135

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++L++DE+D ML  GF   I ++   +P   Q +
Sbjct: 136 GVQVVSGTPGRVCDMIKRRTLRTRGIKLLILDESDEMLSRGFKDQIYDVYRYLPPELQVV 195

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+ +E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 196 LISATLPNEILEITSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL--YD 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I++ F+ GT ++++ 
Sbjct: 254 TLTITQAVIFCNTKRKVDWLTSKMRENNFTVSSMHGDMPQKERDAIMAEFRGGTTRVLIT 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +  IE
Sbjct: 314 TDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIE 373

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 374 QYYSTQIDEMPMNVADL 390


>gi|332849248|ref|XP_511724.3| PREDICTED: eukaryotic initiation factor 4A-III [Pan troglodytes]
          Length = 411

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 99  CLDI---QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 216 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 274 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E  IHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 334 TDVWARGLDVPQVSLIINYDLPNNRELSIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 393

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 394 QYYSTQIDEMPMNVADL 410


>gi|308485730|ref|XP_003105063.1| hypothetical protein CRE_20763 [Caenorhabditis remanei]
 gi|308257008|gb|EFP00961.1| hypothetical protein CRE_20763 [Caenorhabditis remanei]
          Length = 401

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 131/379 (34%), Positives = 214/379 (56%), Gaps = 7/379 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + IP +L+  DV   AQ+GTGKTA+F + +L 
Sbjct: 27  TFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQ 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 87  TLDT---QVRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDY 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   + +I   +P   Q +
Sbjct: 144 GQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVV 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L+      
Sbjct: 204 LLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDKEEWKFDTLIDL--YD 261

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   ++FCN ++ V  L   +++  F+V ++HG+++Q+ R +++  F+ GT +++++
Sbjct: 262 TLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLIS 321

Query: 302 SDLAARGLDIPDVGHV--FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +D+ ARGLD+P V  V   N+D+PN  E YIHRIGR+GR GR G A   V ++D++ +  
Sbjct: 322 TDVWARGLDVPQVSLVSVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRD 381

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    ++D +  +++ +
Sbjct: 382 IEQYYSTQIDEMPMNIADI 400


>gi|320164743|gb|EFW41642.1| DEAD box ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC
           30864]
          Length = 594

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 151/433 (34%), Positives = 227/433 (52%), Gaps = 19/433 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+ P +V A    G+  PTPIQ ++IP+ L   D+ G+A+TG+GKTASF LP+L 
Sbjct: 147 TFQALGIVPSLVEACSRMGFKAPTPIQRQSIPVALTGRDIIGLAETGSGKTASFALPVLQ 206

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    LIL PTRELA Q+++ FE  G    +   +++GG+    Q   L +
Sbjct: 207 KL---LEKPQPLFALILTPTRELAYQISEQFEALGSTIGVKCCVIVGGMDMTTQAIALSK 263

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +LI TPGRI+DH    K     ++ L++DEADR+L+M F   +  I   +P  R T 
Sbjct: 264 KPHILIATPGRIVDHLENTKGY---LKFLIMDEADRILNMDFEEEVDKILKAIPKERNTY 320

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SATMT ++ K+    L+NP +IEV T     +T+           ++          +
Sbjct: 321 LYSATMTSKVAKLQRASLRNPVKIEVATKY---QTVGTLVQQYLFIPARFKDCYLTYALN 377

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q    + IIF     N   +   L   GF    +HG + Q  R+  L+ FKE +  ++VA
Sbjct: 378 QLAGNSTIIFTMTCANAQRVALMLRNLGFPAIPLHGQLTQPKRLGALNKFKEQSRSILVA 437

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR G++ T+V + D++    IE
Sbjct: 438 TDVASRGLDIPHVDLVINYDIPTHSKDYIHRVGRTARAGRSGRSITMVTQYDVELFQRIE 497

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQH----NHARKNNPIPQKSTGFDR------RKK 411
           +LI KK++    +   +   LE+   AQ         +N+P   K  G DR      R+ 
Sbjct: 498 QLINKKMELYESEEEQVLMLLERTSEAQRMAITQMRDENDPRNGKRRGHDRDDDTEERQH 557

Query: 412 NYSSQKSHIPLKE 424
           N        P  E
Sbjct: 558 NIGKHLHKKPRSE 570


>gi|269137456|ref|YP_003294156.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda EIB202]
 gi|267983116|gb|ACY82945.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda EIB202]
 gi|304557530|gb|ADM40194.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda FL6-60]
          Length = 424

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 138/422 (32%), Positives = 217/422 (51%), Gaps = 10/422 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  L P V+ A+   G+   TPIQ   +PL +   DV G AQTGTGKT +F+     
Sbjct: 5   KFADFALHPMVIKALESKGFHSCTPIQALALPLAIAGRDVAGQAQTGTGKTLAFLASTFH 64

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q +
Sbjct: 65  YLLTHPAIAERKTNQPRALIMAPTRELAVQIHSDAEPLAQETGLRLGLAYGGDGYDKQLR 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE+G D+LI T GR++D+  +G + +  I+++V+DEADRM D+GFI  I+ +   +P T
Sbjct: 125 VLEQGVDILIGTTGRLIDYAKQGHVDLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPT 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F        V       +T        +   +++   L Q
Sbjct: 185 AQRLNMLFSATLSYRVRELAFEHMNNAEYVEVEPEQ-KTGHRIQEELFYPSNEEKMRLLQ 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G I 
Sbjct: 244 TLLEEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVPQKKRLRILEDFTKGHID 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  GK+ +L  +E + ++
Sbjct: 304 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGKSISLACEEYVLNL 363

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE  I   +     +    L  L  P +++  +++    +    P++ +G  R  +  
Sbjct: 364 PAIESYIGHSIPVSKYNSDALLKDLPAP-KRLSRSRNGAGARRPGSPRRGSGAPRPNRKR 422

Query: 414 SS 415
           S 
Sbjct: 423 SG 424


>gi|210631565|ref|ZP_03296936.1| hypothetical protein COLSTE_00821 [Collinsella stercoris DSM 13279]
 gi|210160006|gb|EEA90977.1| hypothetical protein COLSTE_00821 [Collinsella stercoris DSM 13279]
          Length = 595

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 149/380 (39%), Positives = 213/380 (56%), Gaps = 10/380 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS +V+ AV D GY  PTP+Q  +IP  L   DV   AQTGTGKTA+F+LP + 
Sbjct: 40  TFADLGLSDEVLAAVADMGYTSPTPVQAASIPHALDGEDVLAAAQTGTGKTAAFLLPTMN 99

Query: 62  ILEK-------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            L         GR   + P  L++ PTRELA Q+ D      K    T   ++GG+ +  
Sbjct: 100 NLPHVPRGRARGRVAAQGPLMLVVTPTRELAQQIEDVCRAIAKCTGHTSVTVVGGVSYNP 159

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL+RG D+LI TPGR+ D  ++G   ++ +++LV+DEADRMLDMGF+P ++ I    
Sbjct: 160 QRDKLKRGCDILIATPGRLQDLIDQGACSLDQVQVLVLDEADRMLDMGFLPAVRRIVGYT 219

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTLLFSAT+ ++      + + +P R+E+   +STA+T+E   +    +       
Sbjct: 220 RDDRQTLLFSATLDEQAVGSITDLVHDPARVEIAPVTSTADTVEQYVLPVSLEAKNAL-- 277

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
               +  ++     I+FC  K         L + G +  AIHG+  Q  R + L  F+ G
Sbjct: 278 -LASVLKREGASRAIVFCRTKHRADACSRRLARAGITCAAIHGDRSQAQRERALKAFRAG 336

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+ ARG+DI DV +V NFDVP    +YIHRIGRTGRAG  G + T V  +D+
Sbjct: 337 ECDVLVATDVLARGIDISDVRYVVNFDVPEDPVDYIHRIGRTGRAGELGWSLTFVTPDDV 396

Query: 355 KHIDAIEKLIEKKVDWLNGD 374
                IE L+ K  D  + +
Sbjct: 397 AEFYDIEALMGKTADLFDAE 416


>gi|119493424|ref|XP_001263902.1| ATP dependent RNA helicase (Dhh1), putative [Neosartorya fischeri
           NRRL 181]
 gi|142981160|sp|A1D8G1|DHH1_NEOFI RecName: Full=ATP-dependent RNA helicase dhh1
 gi|119412062|gb|EAW22005.1| ATP dependent RNA helicase (Dhh1), putative [Neosartorya fischeri
           NRRL 181]
          Length = 507

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 126/424 (29%), Positives = 204/424 (48%), Gaps = 12/424 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     + +    LIL PTRELA Q +   +  GK+  + V +  GG        +L 
Sbjct: 107 ERINPKSTKTQA---LILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRLN 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 164 DAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F     R           T+            K+       L 
Sbjct: 224 MLFSATFPLIVKS----FKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q+ R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKI 399

Query: 361 EKLIEKKVDWLNGDLSSL-----NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           E+ +  ++  +  ++        +P      I+  +  R+    P  ++  DRR  N+ +
Sbjct: 400 EQELGTEIQPIPQNIDKKLYVYDSPETIPRPISNPSQPRQITNTPANTSTADRRHHNHPN 459

Query: 416 QKSH 419
              +
Sbjct: 460 NGQY 463


>gi|288936404|ref|YP_003440463.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
 gi|288891113|gb|ADC59431.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
          Length = 451

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 156/374 (41%), Positives = 228/374 (60%), Gaps = 6/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ AV + GYV+PTPIQ + IP V+Q  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVMQGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L          R  R LIL PTRELAAQV +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QRLIDKEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++++EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVSLDSVEILVLDEADRMLDMGFIHDIRRVLAKLPAR 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++E  L NP  +EV   ++ +E I            ++      
Sbjct: 181 RQNLLFSATFSDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQL- 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 240 --IGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL 371
             IE+L++K++  +
Sbjct: 358 RDIERLLKKEIPRI 371


>gi|238897556|ref|YP_002923235.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465313|gb|ACQ67087.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 598

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 143/398 (35%), Positives = 233/398 (58%), Gaps = 11/398 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGLSP ++ A+ D GY KP+PIQ++ IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 7   ISFSKLGLSPSILSALTDLGYEKPSPIQLECIPHLLNGSDVLGMAQTGSGKTAAFGLPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++     ++ P+ L+L PTRELA QVA     + K       L +  G P+  Q K L
Sbjct: 67  QNIKP---DIKAPQILVLAPTRELAVQVAQALTNFSKYMKGINVLALYGGQPYHVQLKAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  +++ TPGR+LDH  RG L ++++  LV+DEAD ML MGFI  ++NI + +P   Q
Sbjct: 124 RQGPQIVVGTPGRLLDHLKRGTLNLSSLTGLVLDEADEMLRMGFIEDVENILAKIPAEHQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM D +++++  F++ PK + +++  +T   I   +   +     +        
Sbjct: 184 TALFSATMPDAIRRITRRFMKEPKEVRIHSNVTTKPDINQSYWPVFGMRKNQA---LVRF 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   + +  +LE  G++  A++G+++Q  R + L   K+G + ++
Sbjct: 241 LEVEDFDAAIIFVRTKNATLEVAEALEDSGYNSAALNGDMNQSLREQTLERLKDGRLDIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 301 IATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLKN 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPP--LEKI--DIAQHNHA 393
           IE++I++ +  +    + L     LEK    + QH  +
Sbjct: 361 IERVIKQPIPEIQLPKAELLSQRRLEKFAATVRQHIES 398


>gi|206579391|ref|YP_002239559.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae
           342]
 gi|290510541|ref|ZP_06549911.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. 1_1_55]
 gi|206568449|gb|ACI10225.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae
           342]
 gi|289777257|gb|EFD85255.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. 1_1_55]
          Length = 451

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 156/374 (41%), Positives = 228/374 (60%), Gaps = 6/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ AV + GYV+PTPIQ + IP V+Q  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVMQGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L          R  R LIL PTRELAAQV +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QRLIDKEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++++EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVSLDSVEILVLDEADRMLDMGFIHDIRRVLAKLPAR 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++E  L NP  +EV   ++ +E I            ++      
Sbjct: 181 RQNLLFSATFSDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQL- 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               +   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 240 --IGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL 371
             IE+L++K++  +
Sbjct: 358 RDIERLLKKEIPRI 371


>gi|83746502|ref|ZP_00943553.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
 gi|83726833|gb|EAP73960.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
          Length = 566

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 163/418 (38%), Positives = 242/418 (57%), Gaps = 8/418 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F   GL P ++ A+ ++GY +PTPIQ   IP+V+   DV G AQTGTGKTA F LP++
Sbjct: 86  VTFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPII 145

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L         P        IL PTRELA QV DN  KY K   L  A++ GG+    Q
Sbjct: 146 QNLLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQ 205

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L RG ++L+ TPGR+LDH  +  + ++ + +LV+DEADRMLDMGF+P +Q I +L+P
Sbjct: 206 TEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLP 265

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCAL 234
             RQTLLFSAT + E++K++ ++L++P+ IEV   ++TA+ +          + +     
Sbjct: 266 AHRQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVH 325

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L +    Q      I+F N K     L  +LE++  +  AIHG+  Q  RM+ L  FK+G
Sbjct: 326 LLRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQG 385

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           T+ ++VA+D+AARGLDI  +  V NFD+P  AE+Y+HRIGRTGRAG  G A +L A  D 
Sbjct: 386 TVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDE 445

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           + +  IEKLI++ +      L   +P  E+    +     +     +     +R ++N
Sbjct: 446 RLLADIEKLIKRNLPR--EALVDFDPTGEQARDRERRERDERRNRTEIRRSRERDERN 501


>gi|114564231|ref|YP_751745.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114335524|gb|ABI72906.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 433

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 156/409 (38%), Positives = 231/409 (56%), Gaps = 11/409 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P+++ A+ + GY   TPIQ + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MKFESFSFAPEILRAIAECGYQSMTPIQQQAIPAIRRGEDVLASAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +           T   IL PTRELAAQVADN   Y K+ NLTV  + GG+  + Q++K
Sbjct: 61  QRMCDNPKETMPSNTRTLILTPTRELAAQVADNISAYSKHLNLTVLTIYGGVKIDTQSQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RGADV++ TPGR+L+H     L ++N+E LV+DEADRMLDMGF   I+ I   V   R
Sbjct: 121 LKRGADVIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSADIKKILQAVNKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT + E++K++ + L+ PK I V+  ++TA+T+         +  ++       
Sbjct: 181 QNMLFSATFSSEVKKLANDMLEKPKVITVDKQNTTADTVSQVVYPVEQRRKRELISEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  +  ++F   +     L   L   G     +HG   Q SR + L  F EG I++
Sbjct: 239 -IGTKNWQQVLVFTATRDAADKLVKELNLDGIPSGVVHGEKAQGSRRRALREFVEGKIRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDI ++ +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIKNLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLA 357

Query: 359 AIEKLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            IEKLI + +  +       G    L   +EK         R +N   Q
Sbjct: 358 DIEKLIGQPIRRVTVPGYEVGSREVLLKQIEKRRSFAKKQQRGDNAGAQ 406


>gi|329847732|ref|ZP_08262760.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
           biprosthecum C19]
 gi|328842795|gb|EGF92364.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
           biprosthecum C19]
          Length = 606

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 154/440 (35%), Positives = 252/440 (57%), Gaps = 17/440 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLGLSP ++  +   GY KPTP+Q + IP +L+ HD+ GIAQTGTGKTA+F LP+L 
Sbjct: 3   KFSDLGLSPTLLMTLEREGYEKPTPVQAQAIPYLLKGHDLLGIAQTGTGKTAAFALPILQ 62

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                +     +M R LIL PTRELA+Q+A++F+ Y K   L +A + GG+ +  Q K L
Sbjct: 63  HLLSNRKMPSPKMVRALILSPTRELASQIAESFKTYSKGMGLQIATIYGGVKYGPQYKAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+CTPGR++DH  +  + ++ +E  V+DEAD+MLD+GF+  I+ + S +P  RQ
Sbjct: 123 LGGLDVLVCTPGRLIDHIEQKTVDLSQVECFVLDEADQMLDLGFVKPIRQVASRLPKKRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSATM  E+  ++   L +PKR+E+   ++TAE +    +   AQ  +        +
Sbjct: 183 NLFFSATMPKEIGVLASELLTDPKRVEITPEATTAERVSQQVLFIEAQRKRAL---LSEM 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +   ++  ++F   K++   +   L+  G    AIHG+ +Q  R + L  F+ G ++ +
Sbjct: 240 YADAVLERTLVFTRTKRSADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFRAGKVRAL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V HV N+++PN AE Y+HRIGRT RAG+ G + TL A ++ + +  
Sbjct: 300 VATDIAARGIDVDNVSHVINYELPNVAEAYVHRIGRTARAGKSGVSITLCADDERRLLKD 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ------------HNHARKNNPIPQKSTGFD 407
           IE++  +++   +         L++  +A               H +K +P P +S+  D
Sbjct: 360 IERVTRQRIPSFDRRKDQALKLLDEAILASGQTEKPSTPDRLPEHRKKGDPKPGQSSRRD 419

Query: 408 RRKKNYSSQKSHIPLKESEK 427
              ++       +  +   +
Sbjct: 420 DGPRHSDPDAEFVHKRSRNR 439


>gi|313887901|ref|ZP_07821580.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846067|gb|EFR33449.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 544

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 142/373 (38%), Positives = 219/373 (58%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DL LS +V+ A+ D G+  P+ +Q  TIPL+L+  DV   AQTGTGKTASF +PM+
Sbjct: 1   MRFSDLNLSKEVLQAIDDMGFESPSEVQEATIPLILEGRDVLAQAQTGTGKTASFGIPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             +E    +    + L+L PTRELA QV+D  +K  K       + I  G     Q + L
Sbjct: 61  EGIED---KSHNLQGLVLVPTRELARQVSDELKKLAKYKKFISIVPIYGGADMGKQLRDL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GAD+++ TPGR++DH  R  +++++++ L +DEAD M DMGF   ++ I       RQ
Sbjct: 118 KKGADIVVGTPGRVMDHMKRKTIVLDDLKFLTLDEADEMFDMGFRDDMKTIIEKTNPDRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSAT  +++++ S  +  +P ++ +     TAE IE  ++            +   L
Sbjct: 178 TLFFSATFDNDIKEFSRLYQVDPAKVIIEKKELTAEKIEQFYLELNRNMK---TEILNRL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  IIFCN K+ V  L   + ++G+ V ++HG++ Q SR  ++  F+ GTI ++
Sbjct: 235 ILIHKPKKSIIFCNTKRMVEALELEIAQRGYKVDSLHGDMRQSSRDNVMKKFRNGTIDVL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+ D+  VFN+D+P +AE Y+HRIGRT RAG+ G +FT V   D      
Sbjct: 295 IATDVAARGLDVSDIDLVFNYDLPQQAEYYVHRIGRTARAGKKGASFTFVTSRDYPKFKE 354

Query: 360 IEKLIEKKVDWLN 372
           IEK    K++ + 
Sbjct: 355 IEKYANTKMEKMK 367


>gi|87199313|ref|YP_496570.1| DEAD/DEAH box helicase-like [Novosphingobium aromaticivorans DSM
           12444]
 gi|87134994|gb|ABD25736.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 464

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 213/462 (46%), Positives = 288/462 (62%), Gaps = 12/462 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS +++ +VLDAGY +PTPIQ + IP VL   D+ GIAQTGTGKTA FVLPM+
Sbjct: 1   MKFADLGLSDELLKSVLDAGYDEPTPIQAQAIPAVLMMKDIIGIAQTGTGKTAGFVLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  GR R  MPR+LILEPTRELAAQVA+NFEKYGKN++L +ALLIGG+    Q K L+
Sbjct: 61  DILAHGRRRALMPRSLILEPTRELAAQVAENFEKYGKNHDLKMALLIGGVQMGDQVKALQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR++D F RGK+L+   E+LVIDEADRMLDMGFIP I+NI S +P TRQT
Sbjct: 121 EGVDVLIATPGRLMDLFERGKILLTGCEMLVIDEADRMLDMGFIPDIENICSKLPTTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++ FL NPK IEV  P++T   I    V +  +  ++     + L 
Sbjct: 181 LLFSATMPPPIKKLADKFLSNPKSIEVARPAATNTNIAQFKVRSTTRQKREV---LRHLL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +   IIF N+K  V  L  SL++ GF+   IHG++DQ +R   L  FK+G I ++ 
Sbjct: 238 RTDNVSTAIIFANRKTTVRELAKSLQRHGFAAGEIHGDMDQSARNAELQKFKDGEISILC 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLD+  V HVFNFD P   ++Y+HR+GRTGR G  G+AFTLV+ ED + I+ +
Sbjct: 298 ASDVAARGLDVKGVSHVFNFDTPWHPDDYVHRVGRTGRGGATGRAFTLVSDEDSESIENV 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ---------KSTGFDRRKK 411
           EKL   K+     +L        +   A+ +   K     +         ++    R ++
Sbjct: 358 EKLQGTKIPEFKVELPGKEERKPRESGAERDEEPKRGSRRERPAREERKPRAERESRPER 417

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFM 453
               ++     +   +     +D  E  +    + G +P F+
Sbjct: 418 EARPEREVRAERAPRREPTPYRDQSEPPSKPGEWNGPIPEFL 459


>gi|251780900|ref|ZP_04823820.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243085215|gb|EES51105.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 432

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 158/423 (37%), Positives = 242/423 (57%), Gaps = 15/423 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL +   +  A+ +AGY  PTPIQ ++IP +L+  D  G AQTGTGKTA+F +P+L
Sbjct: 1   MLFKDLNIIEPIQKALTEAGYTNPTPIQEQSIPSLLEGKDFLGCAQTGTGKTAAFAIPVL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +    + R  + LIL PTRELA Q+ +NF  Y K+ N+   ++ GG+  + Q +
Sbjct: 61  QNIAKNQNKSDKSRTIKALILAPTRELAIQIEENFTLYSKHTNIKNTVIFGGVSQKPQTR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+LI TPGR+LD  ++  + ++N++  V+DEADRM DMG +  ++ I + +P  
Sbjct: 121 ILGEGVDILIATPGRLLDLIDQKYIDLSNVKHFVLDEADRMFDMGMVRDVKKIVAKLPKV 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  E++ +  + L++P ++EV   SST +TI         +  K   +   
Sbjct: 181 RQNLLFSATMPSEVKSLVNSILKDPVKVEVAPVSSTIDTITQGVYFVTKKDKKSLLVHLL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                +++K+ ++F   K    N+   L K G    AIHGN  Q +R   LSNFKEG I+
Sbjct: 241 ---KDESIKSLLVFSRTKYGANNIVKDLAKTGTESQAIHGNKSQNARQLALSNFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+  + HV N+D+P+  E Y+HRIGRTGRAG  G A +    ++   +
Sbjct: 298 VLVATDIAARGIDVDGLSHVINYDLPDVPETYVHRIGRTGRAGNSGVAISFCDVDEKSAL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-KKNYSSQ 416
             IEK I K +  +       N   E+I I +    RK     +K+T  +++ K+N+   
Sbjct: 358 KDIEKTIGKNIPVMK------NVEFERIAITREPAQRKE--ADKKTTDANKKPKRNWYGD 409

Query: 417 KSH 419
           K  
Sbjct: 410 KRR 412


>gi|189346086|ref|YP_001942615.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245]
 gi|189340233|gb|ACD89636.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245]
          Length = 418

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 161/430 (37%), Positives = 240/430 (55%), Gaps = 17/430 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L +   ++ A+ + GY  PTPIQ + IPL+L  +D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MQFRSLAIIEPILQAIEEEGYQTPTPIQAEAIPLILDGNDLLGCAQTGTGKTAAFAIPVL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 K   + R  R+LI+ PTRELA Q+ ++F+ YG++  LT  ++ GG+    Q   
Sbjct: 61  QLLNAVKTNEKKRKIRSLIITPTRELAIQIGESFKAYGRHTGLTSTVIFGGVNQNPQTAS 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G D+LI TPGR+LD  N+G L + NIE  V+DEADRMLDMGFI  I+ I + +P  +
Sbjct: 121 LQKGIDILIATPGRLLDLMNQGHLHLRNIEFFVLDEADRMLDMGFIHDIRKILAELPKKK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+ +++ + L NP  + V   SST E I                +    
Sbjct: 181 QSLFFSATMPPEITRLAASILHNPVEVSVTPVSSTVEIINQQIFFVDKGNKNNLLVHLL- 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                 +K  ++F   K     +   L K   +  AIHGN  Q +R + L+NFKE T+++
Sbjct: 240 --KNQDIKTALVFTRTKHGADKVVKYLLKHDITAAAIHGNKAQNARQRALTNFKEQTMRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ ++ +V NFD+ N AE Y+HRIGRTGRAG  G A +    E+ +++ 
Sbjct: 298 LVATDIAARGIDVDELEYVINFDMSNIAETYVHRIGRTGRAGAKGTAISFCDAEEKEYLR 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK---KNYSS 415
            +EKLI KK+  +               +  HN  +      + ++G    K   K+ S 
Sbjct: 358 DVEKLIAKKIPVVES---------HPFPLIDHNPVKTPKQQGRGNSGHPGPKPPAKSASK 408

Query: 416 QKSHIPLKES 425
           + S  P K  
Sbjct: 409 RWSSNPRKAR 418


>gi|307111380|gb|EFN59614.1| hypothetical protein CHLNCDRAFT_29172 [Chlorella variabilis]
          Length = 402

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL  +++  +   G+ KP+ IQ + +  + Q  DV   AQ+GTGKT+   + +  
Sbjct: 30  SFDAMGLREQLLRGIYQFGFEKPSAIQQRAVLPITQGRDVIAQAQSGTGKTSLIAITLCQ 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+     V+    L+L PTRELA Q   N    G +  +     IGG       +KLE 
Sbjct: 90  MLDTTLREVQA---LVLSPTRELATQTEKNILAIGDHMAVQAHACIGGKSVGDDIRKLEN 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L   NI+ LV+DEAD ML+ GF   I +I   +P   Q +
Sbjct: 147 GVHIVSGTPGRVFDMIKRRSLRTRNIKTLVLDEADEMLNKGFKEQIYDIYRYLPPETQVV 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 207 LVSATLPHEVLEMTHKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V A+HG++ Q+ R  I+  F++G  ++++ 
Sbjct: 265 TLTITQAVIFCNTKRKVDWLTEKMRQNNFTVSAMHGDMPQKEREAIMDEFRKGATRVLIT 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +  IE
Sbjct: 325 TDVWARGLDVQQVSLVINYDLPNSRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIE 384

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 385 QFYSTQIDEMPMNVADL 401


>gi|124485198|ref|YP_001029814.1| hypothetical protein Mlab_0371 [Methanocorpusculum labreanum Z]
 gi|124362739|gb|ABN06547.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum
           Z]
          Length = 656

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 135/368 (36%), Positives = 217/368 (58%), Gaps = 7/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+  +S +++ A+ D G+ +PTPIQ   IP +L   DV G AQTGTGKTA+F +P++ 
Sbjct: 6   TFAEFAISEELLQAIGDMGFEEPTPIQAMAIPQILDGKDVTGQAQTGTGKTAAFGIPIIE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     V+    L+L PTRELA Q A+ F +  K       + I  G P E Q + L+
Sbjct: 66  RLDPDNKNVQ---ALVLSPTRELAIQTAEEFSRLMKYKKGLNVVPIYGGQPIERQLRALK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGR++DH  RG L ++++ + ++DEAD+MLDMGF   I++I    P  RQT
Sbjct: 123 GTVQVVIGTPGRVIDHIKRGTLHLDSVTMFILDEADQMLDMGFREDIEDIFRDTPKDRQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +  ++  F ++P+ +++     T   I            +          
Sbjct: 183 ILFSATMPQPILDITRRFQRDPQFVKITRKELTVPQI---EQTYIEVRERDKLEALCRTL 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  ++FCN K+ V +L   ++ +G+ V A+HG++ Q+ R ++++ F+ G+I +++
Sbjct: 240 DMNNPELALVFCNTKRTVDDLMSRMQARGYFVEALHGDMKQQQRDRVMARFRSGSIDVLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV  VFN+DVP   E Y+HRIGRT RAGR GK+ T VA  +I  +  I
Sbjct: 300 ATDVAARGIDVDDVDIVFNYDVPQDVEYYVHRIGRTARAGRTGKSVTFVAPREIYKLRDI 359

Query: 361 EKLIEKKV 368
           ++  + ++
Sbjct: 360 QRYAKIQI 367


>gi|114564376|ref|YP_751890.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114335669|gb|ABI73051.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 477

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 172/452 (38%), Positives = 249/452 (55%), Gaps = 11/452 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL+  ++ AV   GY  P+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSSLGLNAAILKAVEKQGYDTPSPIQAQAIPAVLAGQDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   +    R L+L PTRELAAQV ++   YG N  L  A++ GG+    Q   L
Sbjct: 61  ELLSKGERAQRGQVRALVLTPTRELAAQVQESVATYGVNLPLKSAVVFGGVSIVPQLAAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD   +  +  + +EILV+DEADRMLDMGFI  I+ + +L+P  RQ
Sbjct: 121 RNGVDILVATPGRLLDLCQQKAISFSKLEILVLDEADRMLDMGFIRDIKKVLALLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT ++E++++++  + NP  I V   ++TA T+  C             +     
Sbjct: 181 NLMFSATFSNEIRELAKGLVNNPVEISVTPRNATANTVTQCVYPVDKTRKSMALIEL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  K  ++F   K     L  SLE  G    AIHGN  Q +R K L++FK G +Q+M
Sbjct: 238 IKTNDWKQVLVFSRTKHGANRLAKSLEAAGIKAAAIHGNKSQTARTKALADFKAGAVQVM 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  E++K +  
Sbjct: 298 VATDIAARGIDIDQLPFVVNFDLPNVPEDYVHRIGRTGRAGSTGQAVSLVGLEEVKLLHD 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPL---EKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           IE+LI + ++     L+    P    E    +  N A+K NP   K          +  +
Sbjct: 358 IERLINRVIERKQ--LAGFEAPFTIPEASSRSGGNSAKKPNPNRSKHAQQHANDGAHGDK 415

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
            +  P  +S + S+      +  A++      
Sbjct: 416 PARKP--DSRQPSRSHDKPVDPKAEARANGNK 445


>gi|91206537|sp|Q4X195|DBP2_ASPFU RecName: Full=ATP-dependent RNA helicase dbp2
          Length = 547

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 209/380 (55%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F + G    V+  V   G+ +PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 122 NFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 181

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 182 HINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDL 241

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 242 SRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 301

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T ++SAT   E+++++ +FL +  ++ + +   +A       V   + + K+  +++ L 
Sbjct: 302 TCMWSATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLE 361

Query: 240 QSQDTMKNGIIFCNQKKN-VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   N  +     K     +   L + G+   +IHG+  Q+ R  +L+ FK G   +
Sbjct: 362 KIMENRSNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPI 421

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ D+ HV N+D PN +E+YIHRIGRTGRAG  G A T    E+ K   
Sbjct: 422 MVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSKQAR 481

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    ++  L+ +
Sbjct: 482 DLVTILTEAKQQIDPRLAEM 501


>gi|67967779|dbj|BAE00372.1| unnamed protein product [Macaca fascicularis]
          Length = 764

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 153/465 (32%), Positives = 242/465 (52%), Gaps = 23/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PT IQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 186 LSFQDMNLSRPLLKAITAMGFKQPTSIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 245

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 246 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 305

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 306 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 365

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 366 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 425

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 426 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 485

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 486 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 545

Query: 360 IEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K  +                  K++ +  D+ ++     +    Q + A+ N      
Sbjct: 546 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLL 605

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             G +   +    +++    KE  K  K+ + +QE D   L  RG
Sbjct: 606 EKGKEAVVQE--PERNWFQTKEERKKEKIAKALQEFD---LALRG 645


>gi|57101724|ref|XP_541930.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 49
           isoform 1 [Canis familiaris]
          Length = 488

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 158/446 (35%), Positives = 236/446 (52%), Gaps = 17/446 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  LSE---DPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 123 ADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI---QNITSLVPFTR 178
             V+I TPGR      +     +  I  LV+DEADR+L+ G   +    + I + VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQ 237
           QTLLFSAT+TD L+++       P   E   P  T E ++  ++             L Q
Sbjct: 181 QTLLFSATLTDTLKELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQ 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             Q +    + IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK    +
Sbjct: 241 NFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI  +
Sbjct: 301 ILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLV 360

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK-NYSSQ 416
            AIE+ I+K+++ L+ + + +   L      Q N  R+   I  ++  FD +K+ N   Q
Sbjct: 361 HAIEEQIKKQLEELSVEEAKVLQIL-----TQVNVVRRECEIKLEAANFDEKKEINKRKQ 415

Query: 417 ---KSHIPLKESEKISKLQQDIQEND 439
              +   P  E+++ ++L +  Q+N 
Sbjct: 416 LILEGKDPDLEAKRKAELAKIKQKNR 441


>gi|262405028|ref|ZP_06081580.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC586]
 gi|262348867|gb|EEY98008.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC586]
          Length = 436

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 137/429 (31%), Positives = 214/429 (49%), Gaps = 7/429 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD GL P+V+  +   G+V  TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                          PR +I+ PTRELA Q+ ++ E       L  AL  GG  ++ Q  
Sbjct: 70  HLLTTPAAEGRAETQPRAIIMAPTRELAIQIYNDAEPLLATTGLKAALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G D+LI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLQSGVDILIGTTGRIIDFYKQRAFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +  L    + T   +     F       E        +T        +   ++    L Q
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMNN-PEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L      V  + G++ Q+ R +IL  F +G + 
Sbjct: 249 TLVEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPL-EKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            AIE  I+  +   + D S+L   L   + +      R+ N    ++ G +R+ +     
Sbjct: 369 PAIESYIDHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNNGGNRKPQQRRP- 427

Query: 417 KSHIPLKES 425
           ++  P KE+
Sbjct: 428 RAPRPKKEA 436


>gi|292493687|ref|YP_003529126.1| DEAD/DEAH box helicase [Nitrosococcus halophilus Nc4]
 gi|291582282|gb|ADE16739.1| DEAD/DEAH box helicase domain protein [Nitrosococcus halophilus
           Nc4]
          Length = 423

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 140/418 (33%), Positives = 220/418 (52%), Gaps = 8/418 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L L+  ++  + DAG+   TPIQ  T+PL+L   DV G AQTGTGKTA+F+L  +
Sbjct: 9   ISFDALNLAKPLIQGIQDAGFTVCTPIQALTLPLLLAGKDVAGQAQTGTGKTAAFLLATM 68

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                + G  + + PR LIL PTRELA Q+  + +  G++  L   ++ GG  +  Q   
Sbjct: 69  QYLLRDLGIEQGQQPRALILAPTRELAIQIKKDAQLLGRHTGLRSVVVYGGANYRKQRHL 128

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE+G D+LI TPGR++D++ +       ++++V+DEADRM D+GFI  I+ I   +P   
Sbjct: 129 LEQGCDILIGTPGRLIDYYKQQIFDFKKVQVVVLDEADRMFDLGFIRDIRYILRRLPPPH 188

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           + L    + T  L+     +        V T S      +      +    +K  LL   
Sbjct: 189 KRLGMLFSATLSLRVTELAYEHMNNPRLVQTESQKVTADKIKERVYFPANEEKIPLLLA- 247

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +   ++ I+F N K     +   LE  GF    + G++ Q  R ++L  F+EG+  +
Sbjct: 248 LLKRLAPQHAIVFVNTKYAAEQVWGYLEGNGFKAALLSGDVPQGKRQRLLKEFQEGSYPI 307

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGL IP V HVFN+D+P   E+Y+HRIGRT RAG  G A +   ++    + 
Sbjct: 308 LVATDVAARGLHIPTVTHVFNYDLPQDPEDYVHRIGRTARAGASGSAVSFACEDYAFSLP 367

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            IE+ I  K+   + D  +L+ P + I +       ++N   +K     R+KK  S +
Sbjct: 368 DIEEYIGHKLAPFSVDDEALSIPKQPISLP-----PRDNRNLRKGGHRSRQKKKDSRK 420


>gi|327403899|ref|YP_004344737.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327319407|gb|AEA43899.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 375

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 143/372 (38%), Positives = 220/372 (59%), Gaps = 5/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F +L L P ++ A+ +  Y  PTPIQ ++IP +LQ  D+ G AQTGTGKTA+F LP+ 
Sbjct: 1   MQFDELNLLPHLLDALKELEYTTPTPIQEQSIPSLLQGKDLFGCAQTGTGKTAAFALPIL 60

Query: 60  LTILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +   G+ + + P    +L PTRELA Q+ D+F+ YGK+  L   ++ GG+    Q  +
Sbjct: 61  QHLDPDGQVKGKRPIRCLVLAPTRELANQINDSFKSYGKHSKLRSMVIFGGVNQNKQVNQ 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+L+ TPGR+LD  N+G + ++ I   V+DEADRMLDMGFI  I+ I   +P  +
Sbjct: 121 LNAGIDILVATPGRLLDLMNQGHIQLSKITHFVLDEADRMLDMGFIHDIKKILPRLPKNK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q + FSAT++  + +++   L +P  + V   SSTAE +E           +      + 
Sbjct: 181 QNIFFSATISPTIMELAGTILFDPVNVRVTPVSSTAEIVEQFVYYVEKADKRNF---LKQ 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   + + + I+F   K     +   L K G    AIHG+  Q +R + L+ FK  T+  
Sbjct: 238 LIKTENISHAIVFTRTKHGADRVARELTKSGLKAEAIHGDKSQNARERALAGFKNRTVSF 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RG+DI  + +V NF++P  AE Y+HRIGRTGRAG  G A+TL + E+  ++ 
Sbjct: 298 LIATDIASRGIDIDLLEYVINFEIPEVAETYVHRIGRTGRAGASGIAYTLCSSEEKAYLK 357

Query: 359 AIEKLIEKKVDW 370
           AI+KLI +++  
Sbjct: 358 AIQKLINQQIPE 369


>gi|92112945|ref|YP_572873.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
           DSM 3043]
 gi|91796035|gb|ABE58174.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
           DSM 3043]
          Length = 452

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 159/371 (42%), Positives = 218/371 (58%), Gaps = 4/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ K IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTSLGLSAPILDAVAEQGYETPSPIQAKAIPAVLEGRDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G     +  R LIL PTRELAAQ+  N E YGK+  L  A++ GG+    Q  KL
Sbjct: 61  ERLAAGTRAPGKQVRALILTPTRELAAQIGANIEAYGKHLPLRSAVVFGGVKINPQIAKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD   +  +  + +++LV+DEADRMLDMGFI  I+ I   +P  RQ
Sbjct: 121 RGGVDILVATPGRLLDLHGQKAVNFDALDVLVLDEADRMLDMGFIHDIRRILKTLPSKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + +P  I V   ++TAET+                      
Sbjct: 181 NLLFSATFSQEIRQLAKGLVNDPVEISVTPRNTTAETVTQWIHPVDKARKPALLTHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   LE+ G    AIHGN  Q +R K L  FK G I+++
Sbjct: 238 IHEHQWQQVLVFMRTKHGANRLSRHLEEAGIEAAAIHGNKSQNARTKALDGFKSGEIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NF++PN AE+Y+HRIGRTGRAG  G A +LV  E+ K +  
Sbjct: 298 VATDIAARGLDINQLPQVVNFELPNVAEDYVHRIGRTGRAGASGHAISLVCAEEGKELAG 357

Query: 360 IEKLIEKKVDW 370
           IE+LI + ++ 
Sbjct: 358 IERLIRQTLER 368


>gi|88857246|ref|ZP_01131889.1| RNA helicase DeaD [Pseudoalteromonas tunicata D2]
 gi|88820443|gb|EAR30255.1| RNA helicase DeaD [Pseudoalteromonas tunicata D2]
          Length = 624

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 132/372 (35%), Positives = 218/372 (58%), Gaps = 7/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L   V+ A+ + GY+ PTPIQ + IP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 9   FDQLNLLAPVLQAINEMGYITPTPIQSQAIPSLLAGKDVLGEAQTGTGKTAAFGLPLLSR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           L+     ++ P+ L++ PTRELA QVA+    + K+   L VA + GG  +  Q + L R
Sbjct: 69  LDA---DLKQPQMLVVCPTRELAIQVAEALTDFAKHIRGLFVATVYGGQSYTPQLRDLAR 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH  +G+L ++N++  V+DEAD ML+MGF+  I+ I + +P   Q  
Sbjct: 126 GPQIVVGTPGRMMDHIKKGRLKLDNLKACVLDEADEMLNMGFLEDIEWILNQIPDQTQMA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   ++K++  FL +P  +++    S    I                +  + +  
Sbjct: 186 FFSATMPAPIKKITNQFLTDPIHVKIAVQKSDKPKITQKSWTVGRIGK---TVGLERIAE 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   + + + L   L  +GF   A++G++ Q+ R +I+   K G I +++A
Sbjct: 243 VVDYDAMIVFVRTRNDTLVLAEHLVSKGFKASALNGDMQQQDRERIVEQLKNGRINILIA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P + HV N+D+P+ +E+Y+HRIGRTGRAGR G+A    +  +++ +  +E
Sbjct: 303 TDVVARGLDVPRITHVINYDLPHDSESYVHRIGRTGRAGREGEAILFASHREVRSLSRLE 362

Query: 362 KLIEKKVDWLNG 373
           ++ E K++  + 
Sbjct: 363 RITEGKIEVFDM 374


>gi|172058935|ref|YP_001815395.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171991456|gb|ACB62378.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 410

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 145/419 (34%), Positives = 233/419 (55%), Gaps = 14/419 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L +  + V  +   G  +PTPIQ + IP +L   D+ G AQTGTGKT +F+LP+L 
Sbjct: 3   TFEALHIQEQWVKKLQKQGIKQPTPIQEQAIPHLLAGRDLIGKAQTGTGKTLAFLLPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++     V+    LI+ PTRELA Q+AD   K  +N     AL + G      Q ++L 
Sbjct: 63  QIDLESKTVQA---LIVAPTRELARQIADETHKLIRNMEDIRALAVYGGQDVFKQIQRLG 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++I TPGRILDH  RG L ++ ++ LV+DEAD+ML +GF+P I++I +  P  RQ 
Sbjct: 120 RMPQIIIGTPGRILDHVGRGTLDLSELKTLVLDEADQMLQIGFLPEIEDIIAAAPVDRQF 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SATM ++++++++ +L++P  ++V     T + IE           ++     + + 
Sbjct: 180 VMLSATMPEKVEQLAKTYLRDPIEVQVEAEKVTVDAIEQ---FVVETTDRRKQATLRTML 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      IIFC  ++ V  L   L+ QG+    +HG + Q  R K ++ F +G    ++
Sbjct: 237 DEMRPYAAIIFCRTQRRVSKLNEELQMQGYPTDELHGGLTQGKREKAMAKFYQGKTPFLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLD+  V HVFN+D+P+ AE+Y+HRIGRTGRAG  G A ++V   D +    +
Sbjct: 297 ATDVASRGLDVTGVTHVFNYDLPDDAESYVHRIGRTGRAGNDGVAISIVTPRDGRSFRDM 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           E+ +  +V  +  +LS       ++  AQH+ + K    P +  G  RR  N    + H
Sbjct: 357 ERELGVEVTPIVVELSD------EMIRAQHDQS-KGTKKPAEGRGNTRRSSNRRPGRDH 408


>gi|170691820|ref|ZP_02882984.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170143104|gb|EDT11268.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 493

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 165/375 (44%), Positives = 231/375 (61%), Gaps = 8/375 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+P ++ AV ++GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L    +    P        IL PTRELA QVA N + Y K+  L  A++ GG+    Q+
Sbjct: 72  RLLPQASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQS 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 EQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L++P+ IEV   +STA  +                +  
Sbjct: 192 ERQTLLFSATFSGEIKKLAATYLRDPQTIEVARSNSTATNVTQIVYEVAEGDKTGAVVQL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                + ++K  I+FCN K     L  SLE+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 ---IRERSLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRTQNERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKKVDWL 371
           +  IEKLI++ ++ L
Sbjct: 369 LADIEKLIKRPLEVL 383


>gi|15422163|gb|AAK95821.1| RNA helicase-like protein [Homo sapiens]
          Length = 796

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 155/465 (33%), Positives = 242/465 (52%), Gaps = 23/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 218 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 277

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 278 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 397

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 398 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 457

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 458 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 517

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 518 VATDVAARGLDIEGVKTVINFTMPNTIKHYDHRVGRTARAGRAGRSVSLVGEDERKMLKE 577

Query: 360 IEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K  +                  K++ +  D+ ++     +    Q + A+ N      
Sbjct: 578 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLL 637

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             G +   +    ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 638 EKGKEAVVQE--PERSWFQTKEERKKEKIAKALQEFD---LALRG 677


>gi|10434683|dbj|BAB14343.1| unnamed protein product [Homo sapiens]
          Length = 765

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 155/465 (33%), Positives = 242/465 (52%), Gaps = 23/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 187 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 246

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 247 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 306

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 307 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 366

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 367 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 426

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 427 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 486

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 487 VATDVAARGLDIEGVKTVINFTMPNTIKHYDHRVGRTARAGRAGRSVSLVGEDERKMLKE 546

Query: 360 IEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K  +                  K++ +  D+ ++     +    Q + A+ N      
Sbjct: 547 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLL 606

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             G +   +    ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 607 EKGKEAVVQE--PERSWFQTKEERKKEKIAKALQEFD---LALRG 646


>gi|331696881|ref|YP_004333120.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951570|gb|AEA25267.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 659

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 145/365 (39%), Positives = 208/365 (56%), Gaps = 2/365 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+P++  A+ + GY +P+PIQ + IP ++   D+ G A TGTGKTA+F LPML  
Sbjct: 92  FADLGLAPELQRALDELGYERPSPIQAEAIPSLIDGRDLIGQAATGTGKTAAFALPMLQR 151

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E+  +R   P  L+L PTRELA QV +   +YGK     V  + GG P   Q   L+
Sbjct: 152 LAQERRGSRGTAPLGLVLAPTRELAMQVTEAIARYGKGLRARVLAVYGGAPIGPQLGALK 211

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR +D  NRG L ++ +E++V+DEAD MLDMGF+  I+ I    P TRQ 
Sbjct: 212 RGVDVVVATPGRAIDLINRGALSLDELEVVVLDEADEMLDMGFVEDIETILQATPDTRQA 271

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++ ++  +L +P  + +                 Y             + 
Sbjct: 272 VLFSATMPRRIEVLARTYLTDPVLVRIQREEVPEGEAPRVRQTAYMVPRSHTTAALGRIL 331

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     I+FC  + +V  +  +L  +G    A+HG +DQ  R +++   + G   L+V
Sbjct: 332 ELERPTAAIVFCRTRADVDAVTEALTGRGLRAEALHGGMDQEHRTRVVDRLRNGRTDLLV 391

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + HV N DVP   E+Y+HRIGR GRAGR G A TLVA   ++H+  I
Sbjct: 392 ATDVAARGLDIDQLTHVVNHDVPKSPESYVHRIGRVGRAGREGVAITLVAPASVRHLRNI 451

Query: 361 EKLIE 365
           E+L  
Sbjct: 452 ERLTG 456


>gi|323527279|ref|YP_004229432.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323384281|gb|ADX56372.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
          Length = 530

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 166/392 (42%), Positives = 231/392 (58%), Gaps = 10/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L            R  R LIL PTRELAAQV ++   YGK   L   ++ GG+    Q
Sbjct: 61  QRLHSMPPLAAASGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G D+++ TPGR+LDH  +  + ++++EILV+DEADRMLDMGFI  I+ + + +P
Sbjct: 121 IGALKSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT +DE++ +++N L +P  IEV   ++TAET+            ++    
Sbjct: 181 PKRQNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTH 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 Q      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK+GT
Sbjct: 241 L---IKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGT 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++++
Sbjct: 298 LQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQ 357

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKI 385
            +  IEKLI++ V  + + G         E I
Sbjct: 358 LLKDIEKLIKRPVPQEVIPGFEPDPTAKPEPI 389


>gi|323525320|ref|YP_004227473.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323382322|gb|ADX54413.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
          Length = 486

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 165/373 (44%), Positives = 228/373 (61%), Gaps = 8/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+P ++ AV ++GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L    +    P        IL PTRELA QVA N + Y K+  L  A++ GG+    Q+
Sbjct: 72  RLLPHASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQS 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 DQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   +STA  +                +  
Sbjct: 192 ERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQIVYEVAEGDKTGAVVQL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +  +K  I+FCN K     L  SLE+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 ---IRERNLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFSPNEKKQ 368

Query: 357 IDAIEKLIEKKVD 369
           +  IEKLI++ ++
Sbjct: 369 LADIEKLIKRPLE 381


>gi|147772471|emb|CAN65105.1| hypothetical protein VITISV_021046 [Vitis vinifera]
          Length = 592

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 140/419 (33%), Positives = 221/419 (52%), Gaps = 11/419 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+   V A  + G  +PTP+Q   IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 155 TFADLGLAEWAVQACKELGMRRPTPVQHHCIPRILAGDDVLGLAQTGSGKTAAFALPILH 214

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    V     L++ PTRELA Q+A+ F   G   +L  A+++GG+    Q + L +
Sbjct: 215 RLAEDPFGVFA---LVVTPTRELAYQLAEQFRALGSCLHLRCAVVVGGMDMINQAQTLMQ 271

Query: 122 GADVLICTPGRILDHFNRGKLL---MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              V+I TPGR+     +   +       + LV+DEADR+LD+GF   ++ +   +P  R
Sbjct: 272 RPHVVIATPGRVKVLLEQNPDIPAVFARTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 331

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATMT +LQ + E         E      T E+++  ++           L    
Sbjct: 332 QTLLFSATMTSDLQTLLELSSNKAYFYEAYEGFKTVESLKQQYIFVPKNVKDVYLLHILS 391

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +  +++ IIF +  ++   L   LE+    V A+H    Q  R+  +  FK G + +
Sbjct: 392 KMEEMGIRSAIIFVSTCRSCHLLSLLLEELDLEVAALHSFKSQSLRLAAVHRFKSGQVPI 451

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDIP V  V N+D+P    +Y+HR+GRT RAGR G + ++V + D+  I 
Sbjct: 452 LLATDVASRGLDIPTVDLVVNYDIPRYPRDYVHRVGRTARAGRGGLSLSIVTQNDVDLIH 511

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            IE ++ K++D  +     +   + K+       AR+   +     GF+ + K   +QK
Sbjct: 512 EIEAVLGKQLDKFDCKEKEVLDNITKV-----YKARRVATMKMMDDGFEEKAKARKAQK 565


>gi|89092720|ref|ZP_01165673.1| putative ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
 gi|89083232|gb|EAR62451.1| putative ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
          Length = 427

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 169/421 (40%), Positives = 243/421 (57%), Gaps = 4/421 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L L P++   + + GY +PTPIQ + IPLVL+  D+   AQTGTGKTASF LP++ 
Sbjct: 5   SFAELALCPELQFTLKNLGYEQPTPIQSQAIPLVLRGDDLLAEAQTGTGKTASFALPIIE 64

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L K       P    +L PTRELA QVADN  +YG++  + V  + GG+P E Q K+L+
Sbjct: 65  KLSKNPIDGYRPVRALVLAPTRELAIQVADNTLEYGRDLGMRVISVYGGVPVENQIKRLK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+LD   +  + +  +E LV+DEADRMLD+GFI  IQ I       RQT
Sbjct: 125 RGTDILVATPGRLLDLLRQKAISLEKLEYLVLDEADRMLDLGFIDPIQKIMDYAADDRQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLF+AT  + ++ ++E +L NP +I+V   +STA+ I               A +   L 
Sbjct: 185 LLFTATADESVEVLAEFYLNNPTKIKVTPRNSTAKQIRQFAYQVDYGQK---ADILSYLI 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      ++F   KK V  L   L K+G +  AIHG   QR R+++L+ F  G + ++V
Sbjct: 242 TEGKWGQTLVFVRTKKRVDELTQYLCKEGINAAAIHGEKSQRERVRMLNEFIAGDLHVLV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + +V N+D+PN+ E Y+HRIGRTGRAG  G+A +LVA  + + +  I
Sbjct: 302 ATDVAARGLDIESLPYVVNYDLPNQPEAYVHRIGRTGRAGETGEAVSLVAPAEREFLQRI 361

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EKLI++K+             LE  D A     RK     Q+        +   S+K+  
Sbjct: 362 EKLIKQKIKLRPVPRIEDGKRLEIDDFADKPMKRKPAKAKQQKRKKVESYQPDKSKKAIR 421

Query: 421 P 421
           P
Sbjct: 422 P 422


>gi|163751207|ref|ZP_02158436.1| ATP-dependent RNA helicase DeaD [Shewanella benthica KT99]
 gi|161329036|gb|EDQ00109.1| ATP-dependent RNA helicase DeaD [Shewanella benthica KT99]
          Length = 611

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 140/385 (36%), Positives = 225/385 (58%), Gaps = 9/385 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS  ++ ++ + GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L
Sbjct: 6   LTFRELGLSEPLLRSLDELGYEKPTPIQAASIIPLMAGKDILGQAQTGTGKTGAFALPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + ++     +  P+ L+L PTRELA QVA+ F  Y K       L I  G     Q   L
Sbjct: 66  SNIDPA---INAPQILVLAPTRELAVQVAEAFATYAKFVKGLHVLPIYGGQSMHQQLNAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG  V++ TPGR++DH  RG L +++++ +V+DEAD ML MGFI  I+ I    P  RQ
Sbjct: 123 RRGPQVIVGTPGRVMDHMRRGTLKLDSLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM +++++V+  +L +P  +++   ++T ET E  FV        +  +    +
Sbjct: 183 LALFSATMPEQIKRVANKYLTDPIHVKIAATTATVETTEQRFVQVSQHNKLEALVRVLEV 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   IIF   + + V L   LE +G++   +HG+++Q++R + +   K G++ ++
Sbjct: 243 EKTEGI---IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGSLDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  + HV N+D+P   E YIHRIGRTGRAGR G A   V   +++ +  
Sbjct: 300 IATDVAARGLDVERIRHVINYDIPYDTEAYIHRIGRTGRAGRTGMAILFVTHREMRMLRT 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE+  + ++     D+ S     E+
Sbjct: 360 IERATKSRIS--PMDVPSPESVTER 382


>gi|55823472|ref|YP_141913.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
 gi|55739457|gb|AAV63098.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 528

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 152/373 (40%), Positives = 225/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  +  AV+ AG+ +P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L 
Sbjct: 61  DKIRT---EENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +NNIE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T   ++  F+    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R++I+ +FK G I ++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLGII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|260774368|ref|ZP_05883282.1| ATP-dependent RNA helicase RhlB [Vibrio metschnikovii CIP 69.14]
 gi|260610495|gb|EEX35700.1| ATP-dependent RNA helicase RhlB [Vibrio metschnikovii CIP 69.14]
          Length = 433

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 134/408 (32%), Positives = 213/408 (52%), Gaps = 6/408 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD GL P+V+  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADFGLHPQVIEGLDKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 E    +   PR +I+ PTRELA Q+ ++ E       +  AL  GG  ++ Q  
Sbjct: 70  HLLTTPEAEGRKPNQPRAIIMAPTRELAIQIYNDAESLIATTGIKTALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           K++ G DVLI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KIQEGVDVLIGTTGRIIDFYKQKAFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           ++ L    + T   +     F       E     +T +T        +   ++    L Q
Sbjct: 190 KERLNMLFSATLSYRVQELAFEHMHN-PEHVVVEATQKTGHRIKEELFYPSNEHKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  ++     I+F N K     +  SL   G  V  + G++ Q+ R +IL  F +G + 
Sbjct: 249 TIIEEEWPDKAIVFANTKHRCEQVWGSLAADGHRVGLLTGDVPQKKRERILEQFTQGELD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+ +E+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHIPLVTHVFNYDLPDDSEDYVHRIGRTGRAGESGSSISFACEEYAVNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEK-IDIAQHNHARKNNPIPQKST 404
            AIE+ IE  +   + D ++L   L K + +   +  R+ N    +S 
Sbjct: 369 PAIEEYIEHSIPMSDYDPTALLTDLPKPLTLRSSSQQRRTNTTGSRSG 416


>gi|145632667|ref|ZP_01788401.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655]
 gi|229846508|ref|ZP_04466616.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 7P49H1]
 gi|144986862|gb|EDJ93414.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655]
 gi|229810601|gb|EEP46319.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 7P49H1]
          Length = 439

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 137/398 (34%), Positives = 211/398 (53%), Gaps = 6/398 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP + 
Sbjct: 5   QFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   P  LIL PTRELA QVA+  E+  +  +L +A + GG+ ++       
Sbjct: 65  HLLDYPRRKPGPPCILILTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QT
Sbjct: 125 TNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL       L N     V+   S  E  +      +A  ++    L     
Sbjct: 185 LLFSATLEGELLVDFAERLLNDPVK-VDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +  GI+F  ++++   +  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 244 ETEKVTRGIVFVRRREDAREVSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPPL--EKIDIAQHNHAR 394
           ++  E+  K   L G      PP   E   +++   AR
Sbjct: 364 KRYTEEILKARILAGLEPRTKPPKDGEVKSVSKKQKAR 401


>gi|187479813|ref|YP_787838.1| ATP-dependent RNA helicase [Bordetella avium 197N]
 gi|115424400|emb|CAJ50953.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
          Length = 477

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 160/376 (42%), Positives = 230/376 (61%), Gaps = 6/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+  ++ A+ + GY  PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L 
Sbjct: 6   SFADLGLADSLLRAIAETGYTAPTPIQAQAIPQVLRGGDLLAAAQTGTGKTAGFTLPILH 65

Query: 62  ILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L + +   R    PR LIL PTREL AQVA++ + YGK+  LT  ++ GG+    Q   
Sbjct: 66  MLSQNKPAKRSAGRPRCLILTPTRELTAQVAESVQVYGKHTGLTSMVMFGGVNINPQISA 125

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+L+ TPGR+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ + +L+P +R
Sbjct: 126 LRKPVDILVATPGRLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKSR 185

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +DE+++++   L NP  + V   ++  E +          + +        
Sbjct: 186 QNLLFSATFSDEIRELARGVLHNPGEVSVTPRNTATELVTQTVYLVDQAHKRDLVSHL-- 243

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S+      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK+G++ +
Sbjct: 244 -ISESGWHQVLVFTRTKHGANRLAEKLVKDGLSAAAIHGNKSQSARTRALAGFKDGSVAV 302

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV   +IK + 
Sbjct: 303 LVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDSSEIKLLK 362

Query: 359 AIEKLIEKKVDWLNGD 374
           AIE+LI+K +D    D
Sbjct: 363 AIERLIKKTIDRKTVD 378


>gi|120610479|ref|YP_970157.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120588943|gb|ABM32383.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
          Length = 599

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 158/431 (36%), Positives = 242/431 (56%), Gaps = 7/431 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AV + GY  PTPIQ + IP VL  HD+   AQTGTGKTA+F LPML
Sbjct: 1   MTFDELNLAPAILKAVHEQGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +G            +L PTRELAAQV +N   Y K+ ++   ++ GG+    Q  +
Sbjct: 61  HRLTQGGTARPAGGIRALVLTPTRELAAQVEENLRAYAKHLDVKSTVIFGGVGMNPQIDR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++RG D+L+ TPGR+LD   +G L ++ +EILV+DEADRMLDMGFI  ++ + +LVP  +
Sbjct: 121 IKRGVDILVATPGRLLDLQQQGFLDLSRVEILVLDEADRMLDMGFIHDVKKVLALVPRDK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+LLFSAT +DE+++++   L+NP+ I+V   ++T + I            K+       
Sbjct: 181 QSLLFSATFSDEIRELAGTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKQV---LLH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  Q      ++F   K    N+   L K G +  A+HGN  Q +R + L+ FK G I+ 
Sbjct: 238 IIQQHNWSQVLVFTRTKFGANNVAEFLTKNGVTAMALHGNKSQSARTQALAGFKSGDIRA 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI ++ HV N+++PN  E+Y+HRIGRTGRAG  G+A +LV  ++   + 
Sbjct: 298 LVATDIAARGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGASGEAVSLVCMDEEGFMM 357

Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            IE+  ++++    L G         E I + +          P +       K   S  
Sbjct: 358 EIERFTKQEIPVQVLEGFGPEEGEKAEPIAMGRQTIWGGAGKPPSREVMQAAAKAARSEM 417

Query: 417 KSHIPLKESEK 427
              I   ++ +
Sbjct: 418 MERIRTNKAAQ 428


>gi|325188273|emb|CCA22813.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 465

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+ KP+ IQ + +  +L  HD    AQ+GTGKTA+F + +L 
Sbjct: 93  TFDAMELREDLLRGIYAYGFEKPSAIQQRAVKPILLGHDCIAQAQSGTGKTATFTVSILQ 152

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +    LIL PTRELA Q+       G   ++ V   +GG         L++
Sbjct: 153 KININLKETQA---LILAPTRELAQQIVKVIAAIGDYMSINVHACVGGTAVRDDIHTLQQ 209

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D  N+G L    +++ V+DEAD ML  GF   I ++   +P + Q  
Sbjct: 210 GVHIVVGTPGRVGDMINQGALRTEAVKMFVLDEADEMLSRGFQDQIYDVFRFLPESVQVA 269

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+ +V++ F+++P RI V     T E I+  FVA   +  K   L       
Sbjct: 270 LFSATMPQEVLEVTQKFMRDPIRIMVKRDELTLEGIKQFFVAIEREEWKFDTLCDL--YE 327

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   II+CN ++ V  L   ++ + F+V A+HG++DQR R  I+  F+ G+ ++++ 
Sbjct: 328 TLTITQAIIYCNTRRKVDWLTEKMQSKDFTVSAMHGDMDQRQRDIIMREFRSGSSRVLIT 387

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   + + D++++  IE
Sbjct: 388 TDLLARGIDVQQVSLVVNYDLPLNRENYIHRIGRSGRFGRKGVAINFLTECDVRYLKDIE 447

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    +++ +  +++ L
Sbjct: 448 KFYNTQIEEMPMNVADL 464


>gi|262396820|ref|YP_003288673.1| cold-shock DEAD-box protein A [Vibrio sp. Ex25]
 gi|262340414|gb|ACY54208.1| cold-shock DEAD-box protein A [Vibrio sp. Ex25]
          Length = 644

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 154/463 (33%), Positives = 242/463 (52%), Gaps = 35/463 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+   G+V PTPIQ   IP +L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             ++  + +   P+ ++L PTRELA QVA   +  GKN      L I G      Q + L
Sbjct: 66  NKIDLNQRK---PQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA V++ TPGR+ D  NR +L ++ +   V+DEAD ML+MGF+  +  I    P + Q
Sbjct: 123 KSGAQVIVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   L+K+ E FL+ P  ++V   + T + ++  F         +        
Sbjct: 183 RVLFSATMPPMLKKIVERFLREPVMVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLET 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D     I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 243 EETD---ASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE++ +  ++ +   L           +A+   A+    +               ++K H
Sbjct: 360 IERVTKSSMEEIQLPLRD--------QVAEARLAKLGAELE--------------AEKEH 397

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
             L +  ++ +  Q   + D  +L       A +L + +GK  
Sbjct: 398 KALDKFAELVEKLQTSLDIDPATLA------AMLLKRQQGKRP 434


>gi|268565371|ref|XP_002639425.1| Hypothetical protein CBG04018 [Caenorhabditis briggsae]
 gi|187036206|emb|CAP24812.1| hypothetical protein CBG_04018 [Caenorhabditis briggsae AF16]
          Length = 393

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 207/377 (54%), Gaps = 12/377 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL  +++  +   G+ KP+ IQ + IP +L+  DV   AQ+GTGKTA+F + +L 
Sbjct: 28  TFDKMGLREELLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQ 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 88  SLDT---QVRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDY 144

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   + +I   +P   Q +
Sbjct: 145 GQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVV 204

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L+      
Sbjct: 205 LLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLYDT- 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                   +  +    V  L   +++  F+V ++HG+++Q+ R +++  F+ G  +++++
Sbjct: 264 --------LTSSSFLKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGNTRVLIS 315

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  V N+D+PN  E YIHRIGR+GR GR G A   V ++D++ +  IE
Sbjct: 316 TDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDIE 375

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ +
Sbjct: 376 QYYSTQIDEMPMNIADI 392


>gi|194224511|ref|XP_001501169.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
           [Equus caballus]
          Length = 724

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 150/448 (33%), Positives = 236/448 (52%), Gaps = 20/448 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 236 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 295

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV    ++  +  ++T  L +GG+  ++Q   L 
Sbjct: 296 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALR 355

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 356 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 415

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 416 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 475

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 476 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 535

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K +  
Sbjct: 536 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 595

Query: 360 IEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I K  +                  K++ +  D+ ++     +    Q + A+ N      
Sbjct: 596 IVKTAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLL 655

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISK 430
             G +    N+  ++S    KE  K  K
Sbjct: 656 EKGKE--GPNHEPERSWFQTKEERKKEK 681


>gi|251790108|ref|YP_003004829.1| DEAD/DEAH box helicase domain-containing protein [Dickeya zeae
           Ech1591]
 gi|247538729|gb|ACT07350.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
          Length = 455

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 162/440 (36%), Positives = 249/440 (56%), Gaps = 10/440 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY +PTP+Q + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFESLGLSADILRAVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L +        R  R LIL PTRELAAQ+ +N   Y K   L   ++ GG+    Q  
Sbjct: 61  QLLNERPVLAKGRRPVRALILTPTRELAAQIGENVLAYSKYLRLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+LI TPGR+LD  ++  + ++ ++ILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILIATPGRLLDLEHQNAVDLSQVDILVLDEADRMLDMGFIHDIRRVLAKLPPK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE+++++   L NP  +EV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDEIKELAGKLLTNPASVEVVRRNTPSELV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L+NFK+G I+
Sbjct: 238 HLIGKHDWRQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALANFKDGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS--TGFDRRKKNY 413
             IE+L+++++    + G         E I   +      +   P++   +  +R     
Sbjct: 358 RDIERLLKREIPRIAIPGYEPDPTIKAEPIQNGRQGGRGGHGGAPRQGDRSQGERASGRP 417

Query: 414 SSQKSHIPLKESEKISKLQQ 433
              + H P ++       Q+
Sbjct: 418 QGDRPHQPRRDGASRPAGQR 437


>gi|225462242|ref|XP_002263207.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 582

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 140/419 (33%), Positives = 221/419 (52%), Gaps = 11/419 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+   V A  + G  +PTP+Q   IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 145 TFADLGLAEWAVQACKELGMRRPTPVQHHCIPRILAGDDVLGLAQTGSGKTAAFALPILH 204

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    V     L++ PTRELA Q+A+ F   G   +L  A+++GG+    Q + L +
Sbjct: 205 RLAEDPFGVFA---LVVTPTRELAYQLAEQFRALGSCLHLRCAVVVGGMDMINQAQTLMQ 261

Query: 122 GADVLICTPGRILDHFNRGKLL---MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              V+I TPGR+     +   +       + LV+DEADR+LD+GF   ++ +   +P  R
Sbjct: 262 RPHVVIATPGRVKVLLEQNPDIPAVFARTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 321

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATMT +LQ + E         E      T E+++  ++           L    
Sbjct: 322 QTLLFSATMTSDLQTLLELSSNKAYFYEAYEGFKTVESLKQQYIFVPKNVKDVYLLHILS 381

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +  +++ IIF +  ++   L   LE+    V A+H    Q  R+  +  FK G + +
Sbjct: 382 KMEEMGIRSAIIFVSTCRSCHLLSLLLEELDLEVAALHSFKSQSLRLAAVHRFKSGQVPI 441

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDIP V  V N+D+P    +Y+HR+GRT RAGR G + ++V + D+  I 
Sbjct: 442 LLATDVASRGLDIPTVDLVVNYDIPRYPRDYVHRVGRTARAGRGGLSLSIVTQNDVDLIH 501

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            IE ++ K++D  +     +   + K+       AR+   +     GF+ + K   +QK
Sbjct: 502 EIEAVLGKQLDKFDCKEKEVLDNITKV-----YKARRVATMKMMDDGFEEKAKARKAQK 555


>gi|172056656|ref|YP_001813116.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171989177|gb|ACB60099.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 530

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 145/367 (39%), Positives = 220/367 (59%), Gaps = 6/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  ++  VL  G+ + TPIQ +TIP+ L   D+ G AQTGTGKTA+F +P + 
Sbjct: 3   TFRELNLSEALIKGVLKMGFEEATPIQAETIPVGLSGVDLIGQAQTGTGKTAAFGIPTIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    + R  + LIL PTRELA QVA+   + G+   +    + GG   + Q + L +
Sbjct: 63  RLDA---KSRYIQALILAPTRELAIQVAEELNRIGEVKRVHALPVYGGQQIDRQIRALRK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++DH NR  L +++++ +++DEAD ML+MGF+  I+ I   +P TRQTL
Sbjct: 120 NPQIVVATPGRLMDHMNRKTLNLDHVQTVILDEADEMLNMGFVEDIEKILGTLPPTRQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  +++K+++ F+  P  I+V     T E I+  F+                   
Sbjct: 180 LFSATMPPQIRKIADRFMTTPTHIKVKAKEMTVENIDQSFIELKESQKFDVLCRL---ID 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D+ +  IIF   KK V  +   L ++G++   +HG++ Q  R +++  FK+GTI ++VA
Sbjct: 237 TDSPELSIIFGRTKKRVDEMTEGLIQRGYTADGLHGDLTQAKRDQVIRRFKKGTIDILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFDVP   E+Y+HRIGRTGRAG+ G A T V   +   I  IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGSAITFVTPREFGQIKTIE 356

Query: 362 KLIEKKV 368
           ++  KK+
Sbjct: 357 RVTNKKM 363


>gi|301772834|ref|XP_002921834.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic initiation factor
           4A-III-like [Ailuropoda melanoleuca]
          Length = 417

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 131/383 (34%), Positives = 207/383 (54%), Gaps = 11/383 (2%)

Query: 2   DFADLGLSPKVVCAVLD------AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF 55
            F  +GL   ++  +         G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F
Sbjct: 39  TFDTMGLREDLLRGIYAXVRRVVLGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATF 98

Query: 56  VLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            + +L  L+    +VR  + LIL PTRELA Q+       G   N+     IGG      
Sbjct: 99  SISVLQCLDI---QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGED 155

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            +KL+ G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P
Sbjct: 156 IRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP 215

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q +L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L 
Sbjct: 216 PATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLC 275

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                   T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G 
Sbjct: 276 DL--YDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA 333

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++++D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+
Sbjct: 334 SRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIR 393

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
            +  IE+    ++D +  +++ L
Sbjct: 394 ILRDIEQYYSTQIDEMPMNVADL 416


>gi|297736137|emb|CBI24175.3| unnamed protein product [Vitis vinifera]
          Length = 489

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 140/419 (33%), Positives = 221/419 (52%), Gaps = 11/419 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+   V A  + G  +PTP+Q   IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 52  TFADLGLAEWAVQACKELGMRRPTPVQHHCIPRILAGDDVLGLAQTGSGKTAAFALPILH 111

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    V     L++ PTRELA Q+A+ F   G   +L  A+++GG+    Q + L +
Sbjct: 112 RLAEDPFGVFA---LVVTPTRELAYQLAEQFRALGSCLHLRCAVVVGGMDMINQAQTLMQ 168

Query: 122 GADVLICTPGRILDHFNRGKLL---MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              V+I TPGR+     +   +       + LV+DEADR+LD+GF   ++ +   +P  R
Sbjct: 169 RPHVVIATPGRVKVLLEQNPDIPAVFARTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 228

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATMT +LQ + E         E      T E+++  ++           L    
Sbjct: 229 QTLLFSATMTSDLQTLLELSSNKAYFYEAYEGFKTVESLKQQYIFVPKNVKDVYLLHILS 288

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +  +++ IIF +  ++   L   LE+    V A+H    Q  R+  +  FK G + +
Sbjct: 289 KMEEMGIRSAIIFVSTCRSCHLLSLLLEELDLEVAALHSFKSQSLRLAAVHRFKSGQVPI 348

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDIP V  V N+D+P    +Y+HR+GRT RAGR G + ++V + D+  I 
Sbjct: 349 LLATDVASRGLDIPTVDLVVNYDIPRYPRDYVHRVGRTARAGRGGLSLSIVTQNDVDLIH 408

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            IE ++ K++D  +     +   + K+       AR+   +     GF+ + K   +QK
Sbjct: 409 EIEAVLGKQLDKFDCKEKEVLDNITKV-----YKARRVATMKMMDDGFEEKAKARKAQK 462


>gi|152981099|ref|YP_001355159.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151281176|gb|ABR89586.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 778

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 162/462 (35%), Positives = 247/462 (53%), Gaps = 23/462 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL LS  ++  + + GY  P+PIQ  TIPL+L   DV G AQTGTGKTASF LP+L  
Sbjct: 9   FADLKLSEPLLRVLQELGYESPSPIQAATIPLLLNNRDVLGQAQTGTGKTASFALPILAR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    +   P+ L+L PTRELA QVA+ F++Y         L I  G  + AQ   L R
Sbjct: 69  IDI---KQTTPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQLSALRR 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  +G L ++ I+ +V+DEAD ML MGFI  ++ I    P +RQT 
Sbjct: 126 GVHVVVGTPGRVIDHLEKGSLDLSRIKTMVLDEADEMLRMGFIDDVETILQKTPESRQTA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +++++  +L++P  I V   + TA+ I   +                  ++
Sbjct: 186 LFSATMPSAIKRIATTYLRDPDLITVAAKTGTADNIRQRYWLVSGMQKLDALTRILEAEN 245

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   IIF   K     L   L+ +GFS  AI+G+I Q+ R + +   K+G I ++VA
Sbjct: 246 FDGM---IIFARTKLGTEELASKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDILVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+DVP+  E+Y HRIGRTGRAGR G+A   +A  +   + AIE
Sbjct: 303 TDVAARGLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPRERNLLKAIE 362

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           +   + +  L  +L S+   +  + I++                F    ++Y  + +   
Sbjct: 363 RATRQPISVL--ELPSVEA-VNDVRISRFKEQIAETIAAGGLEVFHSLIEDYEREHNVPA 419

Query: 422 LKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
           ++ +  ++KL              RG++P  +  KN  +   
Sbjct: 420 VEIAAALAKLA-------------RGDVPLLLDKKNEVRERS 448


>gi|269962576|ref|ZP_06176923.1| ATP-dependent RNA helicase DeaD [Vibrio harveyi 1DA3]
 gi|269832689|gb|EEZ86801.1| ATP-dependent RNA helicase DeaD [Vibrio harveyi 1DA3]
          Length = 644

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 156/463 (33%), Positives = 239/463 (51%), Gaps = 35/463 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+   G+V PTPIQ   IP +L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             L+  + +   P+ ++L PTRELA QVA   +  GKN      L I G      Q + L
Sbjct: 66  NKLDLDQRK---PQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA V++ TPGR+ D  NR +L ++ +   V+DEAD ML+MGF+  +  I    P + Q
Sbjct: 123 KNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   L+ + E FL+ P  ++V   + T + ++  F         +        
Sbjct: 183 RVLFSATMPPMLKNIVERFLREPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLET 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D     I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 243 EETD---ASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE++ +  ++ +   L             Q   AR +    +             ++K H
Sbjct: 360 IERVTKSSMEEIQLPLRD-----------QVAEARLSKLAAE-----------LEAEKEH 397

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
             L +  ++ +  Q   E D   L       A +L + +GK  
Sbjct: 398 KSLDKFAELVEKLQTSLEIDPAMLA------AMLLKRQQGKRP 434


>gi|261365074|ref|ZP_05977957.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC
           25996]
 gi|288566497|gb|EFC88057.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC
           25996]
          Length = 457

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 153/428 (35%), Positives = 227/428 (53%), Gaps = 21/428 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QRLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++D    GK+  + +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIETIVEATPTDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    +NP+ +EV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKNPEVVEVERVDDQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS--Q 416
            IEK I++K              L ++ +      RK  P   K  G D      S   +
Sbjct: 360 KIEKYIDRK--------------LNEVTVEGMEPTRKRKPAGGKPKGKDGWGDRKSGGWR 405

Query: 417 KSHIPLKE 424
               P KE
Sbjct: 406 GDKKPGKE 413


>gi|165977454|ref|YP_001653047.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165877555|gb|ABY70603.1| ATP-dependent RNA helicase protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 449

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 208/367 (56%), Gaps = 2/367 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F +L L+P+++ A+   GY +PT +Q +TIP  L   D+ G A TGTGKTA+F+LP +
Sbjct: 8   MTFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAI 67

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QV++  + + +   L++A + GG+ ++   +  
Sbjct: 68  QHLLDYPRRKPGAPRILILTPTRELAMQVSEEAQAFAEFTKLSIATITGGVAYQNHGEVF 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR++ +          +EIL+ DEADRML MGF    + I +   + + 
Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT+  EL     + + +     ++   S  E  +      +A   +    L   L
Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLK-IDAEPSRRERKKIQQWYYHADNLEHKTKLLARL 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S   M+  I+F  ++++V  L  +L K+G     + G++ Q  R + ++  KEG + ++
Sbjct: 247 ISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKEGVVNVL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI DV +V NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D K +  
Sbjct: 307 VATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGK 366

Query: 360 IEKLIEK 366
           I++  E+
Sbjct: 367 IKRYTEE 373


>gi|255527323|ref|ZP_05394201.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|255508970|gb|EET85332.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
          Length = 527

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 149/396 (37%), Positives = 226/396 (57%), Gaps = 12/396 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L  KV+ A+   G+ +P+ IQ + IP++L  +D+ G AQTGTGKT +F  P+L
Sbjct: 4   IKFSDLNLHKKVLQAIDAMGFEEPSQIQAEAIPVILSGNDMIGQAQTGTGKTLAFGAPVL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + +E           L+L PTRELA QV D   +  K     +  + GG P + Q K L 
Sbjct: 64  SQIE----SSDKISALVLTPTRELAIQVNDELARIAKFKRTKLLPVYGGQPIDRQIKSLR 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGRILDH  R  L ++ +  LV+DE+D ML+MGFI  I+ I   +   RQT
Sbjct: 120 RGVDVVVGTPGRILDHIKRNTLDLSGVNFLVLDESDEMLNMGFIDDIEEIIKSLNKDRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+ K++  +++N  +      +S        +        +  +L +  + 
Sbjct: 180 LLFSATMPKEIAKLASKYMKNEVKHIKIVKNSLTVEKIKQYYYEVKHKDRFESLCR--IL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D   + IIFC  K+ V  L  S++ +G++V  +HG++ Q  R+  L  FKEGT+  +V
Sbjct: 238 DIDEPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGTLDFLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV HV N+D+P   E+Y+HRIGRTGRA + G A++LV   +   I  +
Sbjct: 298 ATDVAARGIDVDDVSHVINYDLPQDMESYVHRIGRTGRANKEGIAYSLVTPREYIMIKQL 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
           EK  + K+           P L++I  A++N   K+
Sbjct: 358 EKFTKSKIKRKEI------PTLDEIFEAKYNSMLKD 387


>gi|332978670|gb|EGK15368.1| ATP-dependent RNA helicase RhlE [Psychrobacter sp. 1501(2011)]
          Length = 519

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 141/388 (36%), Positives = 235/388 (60%), Gaps = 8/388 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL L+P+++ A+  +GY  PTPIQ ++IP  L   D+   AQTG+GKTA+FVLPML
Sbjct: 40  ITFVDLDLAPELLSALTSSGYEHPTPIQAQSIPPALAGRDLLLSAQTGSGKTAAFVLPML 99

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL-IGGIPFEAQNKKL 119
             + + +A  ++  T+IL PTRELA QV+D+  +Y        ++  +GG P+  Q + L
Sbjct: 100 DKIIRDKATNKVVHTVILTPTRELANQVSDSVRQYSSKTRNIFSVPLVGGAPYGGQIRAL 159

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  ++I TPGR +DH N G++ ++ ++IL++DEADRMLDMGF   I+ + S  P +RQ
Sbjct: 160 NKGVQIIIATPGRFIDHMNSGRIDLSELDILILDEADRMLDMGFADDIEKVMSAAPKSRQ 219

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++ SAT    + K++ +F  NP+RI++   +   +   +       +       +   L
Sbjct: 220 TIMCSATWDGPVGKIAASFTNNPERIDIKAETKHIDESVYYADDFNHKNR-----ILDHL 274

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q  +   IIF   K++   L  SL++QG     +HG++ Q  R +I+++ K G I ++
Sbjct: 275 LTQKDVNQAIIFAATKRSCETLAKSLKEQGHKASFLHGDLPQAKRTRIINDVKAGKISIL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HVFN+D+P + E+Y+HRIGR+GRAGR G A  + + +D   +DA
Sbjct: 335 VATDVAARGIDVSGITHVFNYDLPRQTEDYVHRIGRSGRAGRTGIAINICSIDDRPQLDA 394

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
           I + +++ +     ++  + P     D+
Sbjct: 395 INRYLKRTMSV--EEIEGMEPKKNTKDM 420


>gi|260433348|ref|ZP_05787319.1| dead/deah box helicase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417176|gb|EEX10435.1| dead/deah box helicase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 416

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 152/419 (36%), Positives = 236/419 (56%), Gaps = 8/419 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGL+P +  A+  A + +PTPIQ + IPL ++ HD+ G+AQTGTGKT +F LP++ 
Sbjct: 3   DFDMLGLAPALNDALARAKFTQPTPIQNQAIPLAMEGHDILGLAQTGTGKTLAFGLPLID 62

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               + G+   +  + LIL PTREL  Q+AD+         L VA ++GG     Q   L
Sbjct: 63  HLLAQPGKPAPKTAKALILAPTRELVNQIADSLRSLTTKTKLRVATVVGGQSINKQIMFL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR++D  +RG + + ++  LV+DEAD+MLDMGFI  ++ I   +   RQ
Sbjct: 123 SRGTDILVATPGRLIDLMDRGAVDLGSVRRLVLDEADQMLDMGFIHALRRIAPELGTPRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  +++++S  +L NP+R++V+ P   A+ I                   + +
Sbjct: 183 TMLFSATMPKQMEELSRAYLTNPQRVQVSPPGKAADKITQSVHFVSKPGK---PEKLRQI 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            SQDT    ++F   K     L   L   G++  +IHGN  Q  R + +  F+ G I ++
Sbjct: 240 LSQDTDALTLVFARTKHGAEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRAGEITVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V +V N+D+P   +NY+HRIGRT RAGR G+A    A ++   +  
Sbjct: 300 VATDVAARGIDIPGVAYVINYDLPEVPDNYVHRIGRTARAGREGEAIAFCAPDEFDLLRQ 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           I+KL++ ++   +G   +     E      H   R+  P PQ + G   R++    + +
Sbjct: 360 IQKLMKIQIPVASG---TAPEASETTKPGGHQRNRRRGPKPQGAPGAANRRRRPRHKSA 415


>gi|224418675|ref|ZP_03656681.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter
           canadensis MIT 98-5491]
 gi|253826788|ref|ZP_04869673.1| ATP-dependent RNA helicase DeaD [Helicobacter canadensis MIT
           98-5491]
 gi|313142197|ref|ZP_07804390.1| ATP-dependent RNA helicase [Helicobacter canadensis MIT 98-5491]
 gi|253510194|gb|EES88853.1| ATP-dependent RNA helicase DeaD [Helicobacter canadensis MIT
           98-5491]
 gi|313131228|gb|EFR48845.1| ATP-dependent RNA helicase [Helicobacter canadensis MIT 98-5491]
          Length = 505

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 148/384 (38%), Positives = 218/384 (56%), Gaps = 9/384 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+ GL  KV+  + +AG+ +P+PIQ + IP++L   DV   AQTGTGKTA+F LP++  
Sbjct: 11  FAEFGLKSKVLKGIDEAGFKEPSPIQKEVIPVILDGLDVIAQAQTGTGKTAAFALPLINE 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L            LI+ PTREL  Q+ D   K GK   +    L GG P   Q + LE+ 
Sbjct: 71  LRHD----GSIEVLIVAPTRELVMQIGDEVFKLGKYNKVRTVSLFGGQPIRRQIELLEKK 126

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++I TPGR+LDH   G+L   +  ++V+DE+D MLDMGF+  I+ I + +   RQTLL
Sbjct: 127 PQIVIATPGRLLDHLRNGRLKDFDPRVVVLDESDEMLDMGFLDDIEEIFTYLSSDRQTLL 186

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   ++ +++  L NPK I+V    +T + I   +     Q  +   +        
Sbjct: 187 FSATMPTPIKHLAQKILHNPKLIKVTPSDTTNQDISQRYYIINEQEREDAIVRL---IDS 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     IIF   KK    LC  L  +G+   A+HG+++QR R K +  FK+ +I ++VA+
Sbjct: 244 EMPSKAIIFTRMKKEADLLCERLVNRGYKAGALHGDMEQRERQKSIKAFKDSSINVLVAT 303

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HVFNF +P   E+Y+HRIGRTGRAG+ G A TL    + K +  I++
Sbjct: 304 DIAARGLDISGVSHVFNFHIPLNPESYVHRIGRTGRAGKKGVAITLATPLEFKELRRIKE 363

Query: 363 LIEKKVDWLNGDLSSLNPPLEKID 386
             + K++    ++  L   + K D
Sbjct: 364 NTKAKIELY--EIPDLQDTINKKD 385


>gi|126664485|ref|ZP_01735469.1| DNA and RNA helicase [Marinobacter sp. ELB17]
 gi|126630811|gb|EBA01425.1| DNA and RNA helicase [Marinobacter sp. ELB17]
          Length = 444

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 160/374 (42%), Positives = 231/374 (61%), Gaps = 3/374 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V A LD GY  P+PIQ+K IP VL   DV   AQTGTGKTA FVLP+L
Sbjct: 1   MSFSSLGLSEPLVRATLDQGYETPSPIQLKAIPAVLAGKDVMAAAQTGTGKTAGFVLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +LE+     + PR LIL PTRELAAQV D+   Y +      A++ GG+    Q  KL 
Sbjct: 61  QMLEQNPRTGKGPRVLILTPTRELAAQVHDSVNLYSRYVPTRAAVVFGGVKINPQMMKLR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVL+ TPGR++D + +  +  N +E LV+DEADRMLDMGFI  I+ I +++P  RQ+
Sbjct: 121 KGLDVLVATPGRLMDLYQQNAVRFNEVEFLVLDEADRMLDMGFIRDIRKILAMLPAKRQS 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT ++E++ +++  L +P +I+V   ++TAE++                       
Sbjct: 181 LLFSATFSNEIRTLAKGLLNDPVQIDVAVRNTTAESVIQSVYPVDQSQKTALLSKL---V 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             ++ +  ++F   K     L   L K G +  AIHGN  Q +R + L+ FK+G I+++V
Sbjct: 238 RDNSWEQVLVFTRTKHGANRLTEKLGKDGITAAAIHGNKSQGARTRALAEFKQGDIRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV+ +++  +  I
Sbjct: 298 ATDIAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADELSMLVGI 357

Query: 361 EKLIEKKVDWLNGD 374
           EKLI+K++     +
Sbjct: 358 EKLIKKQLPRKEVE 371


>gi|330999043|ref|ZP_08322768.1| cold-shock DEAD-box protein A [Parasutterella excrementihominis YIT
           11859]
 gi|329575785|gb|EGG57311.1| cold-shock DEAD-box protein A [Parasutterella excrementihominis YIT
           11859]
          Length = 586

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 138/369 (37%), Positives = 211/369 (57%), Gaps = 1/369 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS K+V ++   G+ +PTPIQ K IP++L+  DV G A TGTGKTA+F LP++  
Sbjct: 6   FLELGLSEKLVNSLSSLGFEEPTPIQTKAIPVLLEGRDVLGQAATGTGKTAAFSLPLIQR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                     P+ LIL PTREL  QV++    + ++  + V  + GG  +  Q K L RG
Sbjct: 66  YCLDT-EPGKPQVLILTPTRELCIQVSEAINSFARSSGVYVLPVYGGQDYSRQIKALSRG 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR LDH  RG L +  I+ +V+DEAD MLDMGF   ++ I + +P  RQT L
Sbjct: 125 VQIVVATPGRALDHIRRGTLNLTEIKAVVLDEADEMLDMGFAEDLEAIFAALPEKRQTAL 184

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  ++ K++EN L +   I +               + Y             +   
Sbjct: 185 FSATLPPKIAKIAENHLHDAFHILIPKEKVPEGEQPKVKQSAYIVGRNHKTAALGRILDI 244

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           ++ +  I+F   +  V  L  SL  +G+SV  +HG +DQ  R +++   +   + ++VA+
Sbjct: 245 ESPRLAIVFARTRNEVDELAESLRGRGYSVEPLHGGLDQAQRDRVMKRARAEQVDVIVAT 304

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + HV NF +P+ AE Y+HRIGRTGRAGR G A T++   + + +  IE+
Sbjct: 305 DVAARGIDIDHLTHVINFGIPSSAETYVHRIGRTGRAGREGTAITILEPRESRLLKNIER 364

Query: 363 LIEKKVDWL 371
           L ++K+  L
Sbjct: 365 LTKRKITLL 373


>gi|308498555|ref|XP_003111464.1| hypothetical protein CRE_03767 [Caenorhabditis remanei]
 gi|308241012|gb|EFO84964.1| hypothetical protein CRE_03767 [Caenorhabditis remanei]
          Length = 405

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 131/380 (34%), Positives = 214/380 (56%), Gaps = 8/380 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + IP +L+  DV   AQ+GTGKTA+F + +L 
Sbjct: 30  TFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQ 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 90  SLDT---QVRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDY 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   + +I   +P   Q +
Sbjct: 147 GQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVV 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L+      
Sbjct: 207 LLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDL--YD 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   ++FCN ++ V  L   +++  F+V ++HG+++Q+ R +++  F+ GT +++++
Sbjct: 265 TLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLIS 324

Query: 302 SDLAARGLDIPDVGHV---FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +D+ ARGLD+P V  V    N+D+PN  E YIHRIGR+GR GR G A   V ++D++ + 
Sbjct: 325 TDVWARGLDVPQVSLVSNVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILR 384

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            IE+    ++D +  +++ +
Sbjct: 385 DIEQYYSTQIDEMPMNIADI 404


>gi|78184025|ref|YP_376460.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
 gi|78168319|gb|ABB25416.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
          Length = 458

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 156/430 (36%), Positives = 236/430 (54%), Gaps = 6/430 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L L  + V ++ ++GY+ PTPIQ  TIP VLQ  D+   AQTGTGKTA+F+LP++
Sbjct: 24  LTFEQLELCAETVRSIKESGYLSPTPIQALTIPEVLQGKDIMASAQTGTGKTAAFILPII 83

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +  + + +     +L+L PTRELAAQV  + + Y K   L    + GG+    Q K+L
Sbjct: 84  ELLRAEDKPKRYQVHSLVLTPTRELAAQVEASAKAYTKYLALRSDAVFGGVSIRPQVKRL 143

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D+L+ TPGR+LD  N+  +  +N+++LV+DEADRMLDMGFI  I+ +   +P  RQ
Sbjct: 144 QGGVDILVATPGRLLDLINQKMIRFDNLKVLVLDEADRMLDMGFIRDIKKVIEYLPKNRQ 203

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++FSAT +  ++K++   L +P  I+ +  +  A TIEH                    
Sbjct: 204 NMMFSATFSTPIKKLALGLLNDPVEIKASVQNQAAPTIEHLVHPCDMARKVDLLCHL--- 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  K  ++F   K     +   L  Q     AIHGN  Q +R + L  FK G I+++
Sbjct: 261 IKTNKWKQVLVFARTKHGADKVVKILCHQHMRASAIHGNKSQGARTRALEGFKNGDIKIL 320

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + +V N D+PN AE+Y+HRIGRTGRAG  G A +LVA E+   + A
Sbjct: 321 VATDIAARGIDIHQLPYVINLDLPNVAEDYVHRIGRTGRAGEAGHAISLVAAEEALLLKA 380

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IEK I   +  +  D+      + K +  +    R+  P      G   +  + SSQ+  
Sbjct: 381 IEKFIGNPLPKV--DVVGFEQKILKAEPLKQGGQRQRRPSQSARPGQKAKTNHASSQQRR 438

Query: 420 IPLKESEKIS 429
              ++S   S
Sbjct: 439 SDWRKSSNRS 448


>gi|170754379|ref|YP_001780277.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B1 str.
           Okra]
 gi|169119591|gb|ACA43427.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B1 str.
           Okra]
          Length = 425

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 173/425 (40%), Positives = 256/425 (60%), Gaps = 11/425 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   +  A+ + GY K TPIQ K+IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGIDLVGCAQTGTGKTAAFAVPVL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L KG+   + PR +   +L PTRELA Q+ D+FE YGK  NL  A++ GG+    Q K
Sbjct: 61  QNLSKGKKVNKNPRPIRALVLAPTRELAIQIGDSFECYGKYINLKSAVIFGGVSQNPQTK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+LI TPGR+LD FN+  + + NIE  V+DEADRMLDMG I  ++ I S +P  
Sbjct: 121 ALREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKV 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  E+ K+ ++ +++P R+EV   SST +TI       Y    K+   L +
Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPASSTVDTI---TQEVYHVRKKQKRALLK 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++++ ++F   K+    +   L + G    AIHGN  Q +R + L+NFKEG I+
Sbjct: 238 HLLKDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HVFN+++P+  E Y+HRIGRTGRAG  G A +    E+ K +
Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357

Query: 358 DAIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS--TGFDRRKKN 412
            AIEKLI K++   +     +  +N    K +   +N  +K +   Q       + R+KN
Sbjct: 358 KAIEKLINKEIPVVEEHPYKIRHINEDEVKKENTNNNSNKKPSSKRQGGNWRYSNNRRKN 417

Query: 413 YSSQK 417
            S+++
Sbjct: 418 NSTKQ 422


>gi|212709939|ref|ZP_03318067.1| hypothetical protein PROVALCAL_00989 [Providencia alcalifaciens DSM
           30120]
 gi|212687451|gb|EEB46979.1| hypothetical protein PROVALCAL_00989 [Providencia alcalifaciens DSM
           30120]
          Length = 657

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 143/393 (36%), Positives = 232/393 (59%), Gaps = 7/393 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS  ++ A+ D GY KP+PIQ + IPL+L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 7   MSFADLGLSASILNALSDLGYEKPSPIQQQCIPLLLDGNDVLGMAQTGSGKTAAFSLPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++     ++ P+ L+L PTRELA QVA+    + K+ N    + +  G  ++ Q + L
Sbjct: 67  HNIDA---DLKAPQILVLAPTRELAVQVAEAMSDFSKHMNRVNVVALYGGQRYDVQLRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  V++ TPGR+LDH  RG L ++N++ LV+DEAD ML MGFI  ++NI S +P   Q
Sbjct: 124 RQGPQVVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+++PK I +    +T   I   +   Y     +        
Sbjct: 184 TALFSATMPEPIRRITRRFMKDPKEIRIQASITTRPDIAQSYWTVYGMRKNEA---LVRF 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + ++
Sbjct: 241 LEAEDFDAAIIFVRTKNATLEVAETLERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 301 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           +E+ ++  +  +    + L     +   A+   
Sbjct: 361 VERTMKLTIPEVELPDADLLSQRRQAKFAEQIQ 393


>gi|298505039|gb|ADI83762.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens KN400]
          Length = 446

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 156/431 (36%), Positives = 236/431 (54%), Gaps = 12/431 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF   G  P V   V  AGY  PTPIQ + IP V+   DV G+AQTGTGKTA+F LP+L
Sbjct: 1   MDFKSFGFHPAVSGGVAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++G       R L++ PTRELA Q+ D+F   G+   L    + GG+    Q +KL+
Sbjct: 61  HRLQQG--ERGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA+V++  PGR+LDH  +G + ++ +E+LV+DEAD+M DMGF+P I+ +   +P  RQT
Sbjct: 119 AGAEVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPSRRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  +++ +++  L +P  ++V   +         +       +     L +   
Sbjct: 179 LLFSATMPIDIRALAQEILVDPVTVQVGNVAPAVTVAHALYPVEQHLKTPLLLELLR--- 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ +IF   K     L   LEK G+   ++ GN+ Q  R   L  F++GT Q++V
Sbjct: 236 -HTDTESVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTYQILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV N+D+P+ AE YIHRIGRTGRA R G AFTLV  +D   + +I
Sbjct: 295 ATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGAMVRSI 354

Query: 361 EKLIEKKVDW--LNGDLSSLNPPLEKIDIAQ----HNHARKNNPIPQKSTGFDRRKKNYS 414
           E+ +   ++   + G   S+  P + ++ A+       AR +   P+K            
Sbjct: 355 ERSLGATIERRTVQGFDYSVPAPKKDVEFARPPREPRQARPHGSQPKKGGAAASPPSGRP 414

Query: 415 SQKSHIPLKES 425
           S       ++ 
Sbjct: 415 SHPKEPGQRQP 425


>gi|261400326|ref|ZP_05986451.1| putative ATP-dependent RNA helicase RhlE [Neisseria lactamica ATCC
           23970]
 gi|269209952|gb|EEZ76407.1| putative ATP-dependent RNA helicase RhlE [Neisseria lactamica ATCC
           23970]
          Length = 462

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 143/376 (38%), Positives = 212/376 (56%), Gaps = 5/376 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L   D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPSALDGRDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QRLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPSDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    ++P+ IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDADIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGD 374
            IEK I +K+  L  +
Sbjct: 360 KIEKYIGRKLPELTIE 375


>gi|223937377|ref|ZP_03629282.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
 gi|223893928|gb|EEF60384.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
          Length = 437

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 156/431 (36%), Positives = 235/431 (54%), Gaps = 12/431 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   ++ AV +AGY +PTPIQ   IP ++  HD+ GIAQTGTGKTA+FVLP+L
Sbjct: 1   MSFRTLGLDANILKAVQEAGYTEPTPIQAAAIPQIIAGHDLIGIAQTGTGKTAAFVLPIL 60

Query: 61  TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L   +        R L++ PTREL  Q+ +N   Y K+  L VA + GG+    Q + 
Sbjct: 61  AKLAGMKREANQRGIRALVVAPTRELVVQIEENVRAYSKHLPLKVATVFGGVGEHPQIQA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D++I TPGR+LD  +R     + I  LV+DEADRMLDMGF+P I+ I   +P  R
Sbjct: 121 LRSGVDMVIATPGRLLDLMDRRHGDFSGINFLVLDEADRMLDMGFLPSIRQIVKALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT++ E++ ++  F   PK +++   S+ AET+                +    
Sbjct: 181 QTLLFSATLSREIEGLTHEFQHAPKTVQIGRRSNPAETVTQLVYEVPKHLKPALLVHLLR 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S D +   ++F   K +   +  +LE +G     +H N  Q  R++ L +FK G +++
Sbjct: 241 DPSMDMV---LVFSRMKHSADRIARNLENKGIKTATLHSNRSQNQRLRALKDFKSGAVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + HV N+D P  AE+Y+HRIGRTGRA   G A + V  ED   + 
Sbjct: 298 LVATDIAARGIDVDGISHVVNYDFPMHAEDYVHRIGRTGRAHAVGDAISFVTSEDHGTLR 357

Query: 359 AIEKLIEKKVDWLNG---DLSSLNPPLEKIDIAQ---HNHARKNNPIPQKSTGFDRRKKN 412
           ++E+ I + +        D ++  P ++  D  +     +AR + P  + S G   R   
Sbjct: 358 SLERFIGRGIVRKKAEGFDYNAAAPAVQAGDRERPPMQGNARPSQPA-RHSGGSHPRGNG 416

Query: 413 YSSQKSHIPLK 423
              Q +    +
Sbjct: 417 SGRQGASASRR 427


>gi|85373802|ref|YP_457864.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
 gi|84786885|gb|ABC63067.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
          Length = 492

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 154/418 (36%), Positives = 226/418 (54%), Gaps = 10/418 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLS  V+ A+   GY +PTPIQ + IP VL+  D+ GIAQTGTGKTA+F+LP + 
Sbjct: 5   TFDQLGLSQPVLQALDMKGYNEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSID 64

Query: 62  ILEKGRARVRMPRTLI--LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L +   +       +  L PTRELA Q+A + + YG    L V  ++GG        KL
Sbjct: 65  RLREADNQTPFKSCRMLVLAPTRELAGQIAQSAKDYGAMAGLKVHSIVGGTSVGKDRNKL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD  ++    +N +EILV+DEAD+MLD+GFI  ++ I  LVP  RQ
Sbjct: 125 HRGTDILVATPGRLLDLIDQKAFKLNAVEILVLDEADQMLDLGFIHALRQINDLVPAERQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM  ++Q++   + +NP ++ V   ++TAE I+           +    +    
Sbjct: 185 TLFFSATMPKQIQELVGKYCRNPVKVSVTPAATTAERIDQYLFMVQQDEKQALIEMILKG 244

Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +     K    ++F   K     +   L + G    AIHGN  Q  R + L  FK     
Sbjct: 245 RHAVPGKQERILVFTRTKHGADRVVKKLRQAGIESNAIHGNKSQPQRQRALDEFKRAKTP 304

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARG+DIP V HV N+++PN  E Y+HRIGRT RAG+ G A    A+++  ++
Sbjct: 305 ILIATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGKDGVAIAFCAEDERAYL 364

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLE-----KIDIAQHNHARKNNPIPQKSTGFDRRK 410
             I+K  + + D L     +    +E     K +  Q     K  P  +K  G +R K
Sbjct: 365 KDIQKNTDAEFDRLPLP-ENFRAVVEGVGPTKREQKQRGPRIKPKPKARKQGGTNRSK 421


>gi|294886917|ref|XP_002771918.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239875718|gb|EER03734.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 521

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 131/381 (34%), Positives = 205/381 (53%), Gaps = 2/381 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F   G    ++  +  AG+V PTPIQI+  P+ +   D+ GIA+TG+GKT +F+LP +
Sbjct: 116 VTFEQAGFPDYILHELAQAGFVAPTPIQIQGWPVAMSGRDMVGIAETGSGKTLAFLLPAI 175

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L++ PTRELA Q+ +   K+GK+  +      GG+P   Q + 
Sbjct: 176 VHINAQPYLQRGDGPIVLVMAPTRELAVQIQEECNKFGKSSKIKNTCCYGGVPRGPQARD 235

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G ++ I TPGR++D     +  +  +  LV+DEADRMLDMGF P I+ ITS +   R
Sbjct: 236 LSEGVEICIATPGRLIDFLESQRTNLRRVTYLVLDEADRMLDMGFEPQIRKITSQIRPDR 295

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLL+SAT   E+Q ++ +  +           +              Q  +K   L+QL
Sbjct: 296 QTLLWSATWPKEVQGLARDLCREEPVHINVGTLTLKACHNVTQYVDVVQEYEKRDRLKQL 355

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+        +IF + K+   +L  +L   G+    IHG+  Q  R  +L  FK G   +
Sbjct: 356 LERVMDGSKLLIFTDTKRGADDLTRTLRMDGWPALCIHGDKKQEERDWVLHEFKSGKSPI 415

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+D+A+RGLD+ D+ HV N+D P + E+Y+HRIGRTGRAG  G A+T    + IK   
Sbjct: 416 MIATDVASRGLDVKDIRHVVNYDFPGQIEDYVHRIGRTGRAGCKGNAYTFFTADKIKMAR 475

Query: 359 AIEKLIEKKVDWLNGDLSSLN 379
            + +++ +    ++ +L  L+
Sbjct: 476 GLVQILREANQTVSPELERLS 496


>gi|238918068|ref|YP_002931582.1| ATP-dependent RNA helicase RhlB [Edwardsiella ictaluri 93-146]
 gi|238867636|gb|ACR67347.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 424

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 140/422 (33%), Positives = 218/422 (51%), Gaps = 10/422 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  L P V+ A+   G+   TPIQ   +PL +   DV G AQTGTGKT +F+     
Sbjct: 5   KFADFALHPMVIKALESKGFHSCTPIQALALPLAIAGRDVAGQAQTGTGKTLAFLASTFH 64

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q +
Sbjct: 65  YLLTHPAIAERKTNQPRALIMAPTRELAVQIHSDAEPLAQETGLRLGLAYGGDGYDKQLR 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE+G D+LI T GR++D+  +G + +  I+++V+DEADRM D+GFI  I+ +   +P T
Sbjct: 125 VLEQGVDILIGTTGRLIDYAKQGHVDLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPT 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F        V       +T        +   +++   L Q
Sbjct: 185 AQRLNMLFSATLSYRVRELAFEHMNNAEYVEVEPEQ-KTGHRIQEELFYPSNEEKMRLLQ 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G I 
Sbjct: 244 TLLEEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVPQKKRLRILEDFTKGHID 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E + ++
Sbjct: 304 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGNSISLACEEYVLNL 363

Query: 358 DAIEKLIEKKVD--WLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE  I   +     NGD  L  L  P +++  +++    +    P++ +G  R  +  
Sbjct: 364 PAIESYIGHSIPVSKYNGDALLKDLPAP-KRLSRSRNGTGARRPGSPRRGSGAPRPNRKR 422

Query: 414 SS 415
           S 
Sbjct: 423 SG 424


>gi|67483578|ref|XP_657009.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56474243|gb|EAL51623.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 384

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL  +++  +   GY KP+ IQ K I  + +  DV   +Q+GTGKTA+F + +L 
Sbjct: 13  TFESMGLKDELLKGIYQQGYTKPSGIQQKGIVPITKGRDVIAQSQSGTGKTATFSIGILQ 72

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +E  +  V++    I+ PTRELA Q         +   + V   IGG   +   K +E+
Sbjct: 73  NVESNKREVQVI---IISPTRELAVQSERVISGLSQYMAIQVRGCIGGKSEKEDIKAIEK 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGRI+    +  + + +I+ LVIDEAD ML+ GF+P I +I   +P  RQ +
Sbjct: 130 GCQVISGTPGRIMGLIKKRVINVRHIKTLVIDEADEMLNKGFMPIIYDIFKYLPIKRQIV 189

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+T ++ ++    +  P  I +     T E I+  F+    +  K   L +  +  
Sbjct: 190 LCSATLTPDVIEIGTKIMNKPIEILIKRDEVTVEEIKQYFIEMEGEEQKFDTLCE--IYD 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN +K V  L  ++ K  F V ++H  + Q+ R  I++ F++G  ++++ 
Sbjct: 248 SMTITQSVIFCNMRKKVDWLTENMMKANFPVISMHSEMPQQERDYIMNIFRKGEKRVLIT 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  +  V N+D+P   E YIHRIGR+GR GR G A   V K +++ +  +E
Sbjct: 308 TDVWARGIDVTQISLVINYDMPLNREVYIHRIGRSGRFGRTGIAINFVLKNEMEELRDLE 367

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ L  + + L
Sbjct: 368 RYYSTQINELPENFADL 384


>gi|315606927|ref|ZP_07881933.1| ATP-dependent RNA helicase RhlE [Prevotella buccae ATCC 33574]
 gi|315251308|gb|EFU31291.1| ATP-dependent RNA helicase RhlE [Prevotella buccae ATCC 33574]
          Length = 375

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 152/378 (40%), Positives = 218/378 (57%), Gaps = 5/378 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +S  ++ A+    Y  PTPIQ K IP+ L+  D+ GIAQTGTGKTA+F +P++
Sbjct: 1   MTFNELNISKPILKALELKEYETPTPIQQKAIPIGLEGRDLLGIAQTGTGKTAAFAIPII 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                     R R  + LIL PTRELA Q+ + F+ Y K   L   ++ GG+    Q K+
Sbjct: 61  QQLAKSADDNRRRDIKALILTPTRELAIQIEECFKDYSKFTRLRCCVIFGGVSQNGQVKE 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG D+LI TPGR+LD  ++  + + +I   V+DEADRMLDMGFI  I+ +  L+P  R
Sbjct: 121 LERGVDILIATPGRLLDLISQHIITLEHIRHFVLDEADRMLDMGFIHDIKKLIPLLPKRR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM + + K+S++ L  P R+EV   SS  +TIE               +    
Sbjct: 181 QTLLFSATMPETIAKLSKSLLYKPARVEVAPVSSVVDTIEQRLYFVEKPQKTDLLVSVLK 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  ++ ++F   K     +   L+ +     AIHGN  Q +R + L+NFK G  ++
Sbjct: 241 NDGN---RSALVFSRTKHGADRIARKLKARHIECEAIHGNKSQNARQRALTNFKSGKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI ++  V N+D+P+ AE Y+HRIGRTGRAG  G A T   +E+   + 
Sbjct: 298 IVATDIAARGIDIANLQMVINYDLPDVAETYVHRIGRTGRAGNSGVALTFCTQEERPMVR 357

Query: 359 AIEKLIEKKVDWLNGDLS 376
            I+KL  KK+      L 
Sbjct: 358 DIQKLTGKKLPIAQSPLK 375


>gi|228924198|ref|ZP_04087469.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835416|gb|EEM80786.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 481

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 142/409 (34%), Positives = 236/409 (57%), Gaps = 10/409 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFSNYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLAPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++K+S  ++ +P  IE+     T + IEH     +     +   L + + +
Sbjct: 182 LFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEH---TLFEVIEDEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           + I  ++    G  S      EK    +  HA+   PI +K    D  K
Sbjct: 359 EYIGFEIPKAIGP-SKEEVMKEKAAFEEKIHAK---PIIKKDKNADINK 403


>gi|319424978|gb|ADV53052.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 635

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 140/372 (37%), Positives = 220/372 (59%), Gaps = 8/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ A+ + GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L 
Sbjct: 7   TFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            +         P+ L+L PTRELA QVA+ F  Y K       L I  G   + Q   L+
Sbjct: 67  KVTSQ----TTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG L +++++ LV+DEAD ML MGFI  I+ I    P  RQ 
Sbjct: 123 RGPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWILEHTPSERQL 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +++++V+   L++P  + + +  +T E+IE  FV        +  +    ++
Sbjct: 183 ALFSATMPEQIKRVANQHLRSPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLEVE 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + +   IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++
Sbjct: 243 NTEGV---IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +GHV N+D+P  AE Y+HRIGRTGRAGR G A   V   +++ +  I
Sbjct: 300 ATDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTI 359

Query: 361 EKLIEKKVDWLN 372
           E+    ++  + 
Sbjct: 360 ERSTNSRISPMK 371


>gi|120600329|ref|YP_964903.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|146291742|ref|YP_001182166.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|120560422|gb|ABM26349.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145563432|gb|ABP74367.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 640

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 140/372 (37%), Positives = 220/372 (59%), Gaps = 8/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ A+ + GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L 
Sbjct: 7   TFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            +         P+ L+L PTRELA QVA+ F  Y K       L I  G   + Q   L+
Sbjct: 67  KVTSQ----TTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG L +++++ LV+DEAD ML MGFI  I+ I    P  RQ 
Sbjct: 123 RGPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWILEHTPSERQL 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +++++V+   L++P  + + +  +T E+IE  FV        +  +    ++
Sbjct: 183 ALFSATMPEQIKRVANQHLRSPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLEVE 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + +   IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++
Sbjct: 243 NTEGV---IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +GHV N+D+P  AE Y+HRIGRTGRAGR G A   V   +++ +  I
Sbjct: 300 ATDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTI 359

Query: 361 EKLIEKKVDWLN 372
           E+    ++  + 
Sbjct: 360 ERSTNSRISPMK 371


>gi|308050678|ref|YP_003914244.1| ATP-dependent RNA helicase CsdA [Ferrimonas balearica DSM 9799]
 gi|307632868|gb|ADN77170.1| ATP-dependent RNA helicase CsdA [Ferrimonas balearica DSM 9799]
          Length = 649

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 134/374 (35%), Positives = 215/374 (57%), Gaps = 7/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F+ LGL   ++ A+   G+  PTPIQ + IP +L  HD+ G A TGTGKTA+F LP L
Sbjct: 5   VEFSSLGLPESLLSALSAMGFTSPTPIQAQAIPFMLDGHDILGEAATGTGKTAAFGLPAL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++    R R  + L+L PTRELA QVA   E++  N   + V  L GG P+  Q + L
Sbjct: 65  AGIDP---RQRAAQMLVLAPTRELAIQVATALEEFAVNMKGMRVTTLYGGQPYGPQLRDL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG  V++ TPGR++DH  RG + +++I+  V+DEAD ML+MGF+  I+ I   +P   Q
Sbjct: 122 ERGTQVVVATPGRLMDHIRRGSIELDSIQCCVLDEADEMLNMGFLEDIEWILEHLPDQTQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM +++++++E FL++PK +++ +  +    I                      
Sbjct: 182 MALFSATMPNQIRRIAERFLKDPKHVKIASDRTQKANIVQKAWKVSGLNKLTALERLSET 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D M   I+F   + + + L + L   GF   A++G++ Q+ R   ++   +G I ++
Sbjct: 242 LDYDAM---IVFVRTRNDTMELANHLNNMGFKAAALNGDMSQQQREHTVAQLHKGKINIL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+ ARGLD+P + HV NFD+P  +E+Y+HRIGRTGRAGR G+A       +++ +  
Sbjct: 299 IATDVVARGLDVPRITHVLNFDLPMDSESYVHRIGRTGRAGRSGEAILFARPRELRQLRF 358

Query: 360 IEKLIEKKVDWLNG 373
            E+     ++ +  
Sbjct: 359 YERSTGGTIEMMEM 372


>gi|326316545|ref|YP_004234217.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323373381|gb|ADX45650.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 605

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 157/429 (36%), Positives = 242/429 (56%), Gaps = 7/429 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AV + GY  PTPIQ + IP VL  HD+   AQTGTGKTA+F LPML
Sbjct: 1   MTFDELNLAPAILKAVHEQGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +G            +L PTRELAAQV +N   Y K+ ++   ++ GG+    Q  +
Sbjct: 61  HRLTQGGTARPAGGIRALVLTPTRELAAQVEENLRAYAKHLDVKSTVIFGGVGMNPQIDR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++RG D+L+ TPGR+LD   +G L ++ +EILV+DEADRMLDMGFI  ++ + +LVP  +
Sbjct: 121 IKRGVDILVATPGRLLDLQQQGFLDLSKVEILVLDEADRMLDMGFIHDVKKVLALVPRDK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+LLFSAT +DE+++++   L+NP+ I+V   ++T + I            K+       
Sbjct: 181 QSLLFSATFSDEIRELANTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKQV---LLH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +      ++F   K    N+   L K G +  A+HGN  Q +R + L+ FK G I+ 
Sbjct: 238 IIQEHNWSQVLVFTRTKFGANNVAEFLTKNGVNAMALHGNKSQSARTQALAGFKSGDIRA 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI ++ HV N+++PN  E+Y+HRIGRTGRAG  G+A +LV  ++   + 
Sbjct: 298 LVATDIAARGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGASGEAVSLVCMDEEGFMM 357

Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            IE+  ++++    L+G         E I + +          P +       K   S  
Sbjct: 358 EIERFTKQEIPVQVLDGFGPEEGEKAEPIAMGRQTIWGGAGKPPSREVMQAAAKAARSEM 417

Query: 417 KSHIPLKES 425
              I   ++
Sbjct: 418 MERIRTNKA 426


>gi|59711751|ref|YP_204527.1| DNA and RNA helicase [Vibrio fischeri ES114]
 gi|59479852|gb|AAW85639.1| DNA and RNA helicase [Vibrio fischeri ES114]
          Length = 431

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 163/429 (37%), Positives = 242/429 (56%), Gaps = 12/429 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P++V A+ + GY K TPIQ K IPL  + HD+   AQTGTGKTA+F LP++
Sbjct: 1   MSFSSQGFAPEIVKALTECGYQKLTPIQQKAIPLARKGHDILANAQTGTGKTAAFALPVI 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L   +           IL PTRELA Q+A N   Y K  +LTV  + GG    +Q + 
Sbjct: 61  QQLLDSKKSATRRTARALILAPTRELAEQIAVNIADYIKYTSLTVTSVFGGKKMSSQERA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H     + + N+E LV DEADRMLDMGF+  I+NI   V  + 
Sbjct: 121 LEPGVDILVATPGRLQEHIEEENVSIANLEFLVFDEADRMLDMGFVNAIRNIMMEVNTSP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT + ++ K++ + L+ PKRI V+  ++TA TI H     Y    ++   L   
Sbjct: 181 QIMLFSATSSAQMNKLASDILRKPKRISVDPENTTASTIAH---VVYPVDEERKTELLSE 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +   +  ++F N K+    +   L+  G      HG+  Q +R + L  FKEG  ++
Sbjct: 238 LIGRKNWQQVLVFVNYKETANEIVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+   + 
Sbjct: 298 MVATDVAARGLDIADLPHVINYDMPFLAEDYVHRIGRTGRAGKKGHAVSFVSREEELTVV 357

Query: 359 AIEKLIEKKVDWL------NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR-RKK 411
            +E LI++++  +        +  +    +      ++   R NNP   +S+   R R K
Sbjct: 358 QVETLIQQRIRRVEQPGYEPKNRDAYIDKVNTKSAFKNRKGRTNNPNEDQSSAERRMRLK 417

Query: 412 NYSSQKSHI 420
           N    K+ I
Sbjct: 418 NVIQNKARI 426


>gi|148827621|ref|YP_001292374.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittGG]
 gi|148718863|gb|ABQ99990.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG]
          Length = 439

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 139/398 (34%), Positives = 214/398 (53%), Gaps = 6/398 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP + 
Sbjct: 5   QFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEARDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++       
Sbjct: 65  HLLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QT
Sbjct: 125 TNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL     + L N     V+   S  E  +      +A  ++    L     
Sbjct: 185 LLFSATLEGELLVDFADRLLNDPVR-VDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +  GI+F  ++++   L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 244 ETEEVTRGIVFIRRREDARELSETLRKRGIRSAYLEGKMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPPL--EKIDIAQHNHAR 394
           ++  E+  KV  L G      PP   E   +++   AR
Sbjct: 364 KRYTEEILKVRILAGLEPRTKPPKDGEVKSVSKKQKAR 401


>gi|187476686|ref|YP_784709.1| ATP-dependent RNA helicase [Bordetella avium 197N]
 gi|115421272|emb|CAJ47777.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
          Length = 592

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 161/465 (34%), Positives = 249/465 (53%), Gaps = 19/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M FADLGLSP ++ A+   G+ +PTP+Q   IP  +   D+   +QTG+GKTA+F+LP +
Sbjct: 1   MSFADLGLSPTILSAIEATGFSEPTPVQAAAIPRAMAGADLMVSSQTGSGKTAAFMLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
             +  +   +    + L+L PTRELA QVAD    YG N        ++GG+P+ AQ K 
Sbjct: 61  NRVAGQSPNKGVGVQILVLTPTRELALQVADATATYGANLPGLRTTTVVGGVPYGAQLKA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R  DVL+ TPGR++DH   G++ +N +  LV+DEADRMLDMGFI  I+ I   +P +R
Sbjct: 121 LSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPQSR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+   + +++E  ++ P+RIE+         I    +       K    L   
Sbjct: 181 QTLLFSATLDGSVARLAEKMMREPERIEIAGHRDKHANITQSLLYADDASHKMR--LLDH 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L     +   I+F   K+   +L   L +QGFS  A+HG+++QR R + L+  + G +++
Sbjct: 239 LLRDTRLDQAIVFTATKRGADDLADRLSEQGFSAAALHGDMNQRQRTRTLTQLQRGQVRV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + H  NFD+P +AE+Y+HRIGRTGRAGR G A+TL    +   + 
Sbjct: 299 LVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGLAYTLAVHSERHKVR 358

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IE  I + +      ++ L P             R ++  P+ + G     + +   + 
Sbjct: 359 RIEHYIGQTIT--PETIAGLEP---------QRSPRPSSGGPRGNGGKRPDGRRFGGDRP 407

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFR--GNMP--AFMLPKNRG 459
                +  +  +  +D  +    S G R  G+ P   F     R 
Sbjct: 408 QRSFGDRPQGDRPPRDFGDRPQRSFGDRPQGDRPQRDFGDRPQRS 452


>gi|269124787|ref|YP_003298157.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora
           curvata DSM 43183]
 gi|268309745|gb|ACY96119.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM
           43183]
          Length = 562

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 146/393 (37%), Positives = 212/393 (53%), Gaps = 13/393 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P+++ A+   GY +PTPIQ + IP +L   D+ G A TGTGKTA+F LP+L  
Sbjct: 12  FADLQLRPELLTALAGLGYEEPTPIQREAIPHLLAGRDLLGQAATGTGKTAAFALPILHR 71

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             +       P  L+L PTRELA QVAD F +YG+   + V  + GG P   Q + L+RG
Sbjct: 72  TPRPADEPD-PGALVLVPTRELAVQVADAFHRYGREMGVRVLPVYGGAPIGRQIQVLKRG 130

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR LD  +R  L +  +  +V+DEAD MLDMGF   I+ I +  P  RQT+L
Sbjct: 131 VDVVVATPGRALDLIDRDVLRLARLRTVVLDEADEMLDMGFAEDIEAILAQTPPQRQTVL 190

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  ++   L+ P RIE+  P              Y             L   
Sbjct: 191 FSATVPPRIDGIARRHLREPVRIEIARPEREVGRPPLVRQRAYVVDRAHKPAALGRLLDV 250

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     I+FC  +  V  L   L  +G+   A+HG + Q  R +++   + GT +L++A+
Sbjct: 251 EAPTAAIVFCRTRDQVDELTEMLNGRGYRAEALHGGMSQDQRDRVMGRLRAGTAELLIAT 310

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+D+  + HV N+ VP+  ++Y+HRIGR GRAGR G AFTL    + + + +IE+
Sbjct: 311 DVAARGIDVEHLTHVVNYHVPSDPDSYVHRIGRVGRAGREGVAFTLAEPREHRMLKSIER 370

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
               K+             +EKI       AR+
Sbjct: 371 ATGHKI------------TIEKIPTVADLRARR 391


>gi|207742395|ref|YP_002258787.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
 gi|206593785|emb|CAQ60712.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
          Length = 545

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 163/401 (40%), Positives = 238/401 (59%), Gaps = 13/401 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY +PTPIQ + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 61  TI--------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                     +          R L+L PTRELAAQV ++   YGK   L   ++ GG+  
Sbjct: 61  HRLSAAQPNKVHTPHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q   L+RG D+++ TPGR+LDH  +  + +++IE+LV+DEADRMLDMGFI  I+ I +
Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           ++P  RQ LLFSAT +D+++ +++  L  P  IEV   ++TAET+E        +  ++ 
Sbjct: 181 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKREL 240

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                 L   +     ++F   K     L   L + G S  AIHGN  Q +R + LS FK
Sbjct: 241 ---LAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGISALAIHGNKSQSARTRALSEFK 297

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT++++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  +
Sbjct: 298 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 357

Query: 353 DIKHIDAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHN 391
           +   +  IE+LI++++    L G         E I   ++N
Sbjct: 358 EHGLLRDIERLIKRELPRTVLEGFEPDPTIAPEPIPNGRNN 398


>gi|207727993|ref|YP_002256387.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
 gi|206591237|emb|CAQ56849.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
          Length = 559

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 163/401 (40%), Positives = 238/401 (59%), Gaps = 13/401 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY +PTPIQ + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 17  MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 76

Query: 61  TI--------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                     +          R L+L PTRELAAQV ++   YGK   L   ++ GG+  
Sbjct: 77  HRLSAAQPNKVHTPHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 136

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q   L+RG D+++ TPGR+LDH  +  + +++IE+LV+DEADRMLDMGFI  I+ I +
Sbjct: 137 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 196

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           ++P  RQ LLFSAT +D+++ +++  L  P  IEV   ++TAET+E        +  ++ 
Sbjct: 197 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKREL 256

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                 L   +     ++F   K     L   L + G S  AIHGN  Q +R + LS FK
Sbjct: 257 ---LAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGISALAIHGNKSQSARTRALSEFK 313

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT++++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  +
Sbjct: 314 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 373

Query: 353 DIKHIDAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHN 391
           +   +  IE+LI++++    L G         E I   ++N
Sbjct: 374 EHGLLRDIERLIKRELPRTVLEGFEPDPTIAPEPIPNGRNN 414


>gi|83746106|ref|ZP_00943161.1| ATP-dependent RNA helicase RhlE [Ralstonia solanacearum UW551]
 gi|83727289|gb|EAP74412.1| ATP-dependent RNA helicase RhlE [Ralstonia solanacearum UW551]
          Length = 603

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 163/401 (40%), Positives = 238/401 (59%), Gaps = 13/401 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY +PTPIQ + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 59  MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 118

Query: 61  TI--------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                     +          R L+L PTRELAAQV ++   YGK   L   ++ GG+  
Sbjct: 119 HRLSAAQPNKVHTPHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 178

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q   L+RG D+++ TPGR+LDH  +  + +++IE+LV+DEADRMLDMGFI  I+ I +
Sbjct: 179 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 238

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           ++P  RQ LLFSAT +D+++ +++  L  P  IEV   ++TAET+E        +  ++ 
Sbjct: 239 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKREL 298

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                 L   +     ++F   K     L   L + G S  AIHGN  Q +R + LS FK
Sbjct: 299 ---LAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGISALAIHGNKSQSARTRALSEFK 355

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT++++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  +
Sbjct: 356 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 415

Query: 353 DIKHIDAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHN 391
           +   +  IE+LI++++    L G         E I   ++N
Sbjct: 416 EHGLLRDIERLIKRELPRTVLEGFEPDPTIAPEPIPNGRNN 456


>gi|319637745|ref|ZP_07992511.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
 gi|317400900|gb|EFV81555.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
          Length = 463

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 166/438 (37%), Positives = 255/438 (58%), Gaps = 23/438 (5%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F+ LGL  ++V A+ D GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP 
Sbjct: 1   MNPFSSLGLGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 60

Query: 60  LTILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           L  L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+  + 
Sbjct: 61  LERLKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDK 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++
Sbjct: 121 QTADLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQML 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A  A   +    
Sbjct: 181 PKQRQTLLFSATFSPPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALKKRNL-- 238

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             + L     M   I+FC  K++V  +   L ++  +  +IHG+  Q+SR++ L+ FKEG
Sbjct: 239 -LERLIVDLHMNQVIVFCKTKQSVDQVTRDLVRRHIAAQSIHGDKSQQSRLETLNAFKEG 297

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           T++++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ K + 
Sbjct: 298 TLRVLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQ 357

Query: 355 KHIDAIEKLIEK--KVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           K  +AI++L     KV+ + G      S+ N    +    QHN +R            DR
Sbjct: 358 KMFEAIKELTGSDLKVERIEGFEPHWWSNSNQDEAETHQNQHNDSRSRRD--------DR 409

Query: 409 RKKNYSSQKSHIPLKESE 426
            K++  + KS    K++E
Sbjct: 410 NKRSEYASKSDKNSKKTE 427


>gi|317488296|ref|ZP_07946860.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
 gi|316912603|gb|EFV34148.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
          Length = 516

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 146/464 (31%), Positives = 242/464 (52%), Gaps = 12/464 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS + + AV   GY  PTP+Q + IPL L+  D+   A+TGTGKTA+F LP L 
Sbjct: 13  QFNELGLSDQALEAVARLGYEAPTPVQEQAIPLALEGRDLIAAAKTGTGKTAAFSLPSLD 72

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   +   + P  L++ PTRELA Q+ +       + +  +  ++GG+ +  Q  KL+ 
Sbjct: 73  RLGHAKG-GQGPLMLVVTPTRELAQQIGEVCTAIAASTHHRILTVVGGLSYTPQINKLKH 131

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+LI TPGR++D   +G + + ++E+LV+DEADRMLDMGF P ++ I    P +RQTL
Sbjct: 132 GVDILIATPGRLVDLMEQGAVRLGDVEVLVLDEADRMLDMGFWPAMKKIIGATPASRQTL 191

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++      L +P  +     +   ET +                L + + +
Sbjct: 192 LFSATIDASIKNSVGKLLHDPAFV---EIAHKGETADTVEQYIVHVAQTLKPALLKAVLA 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      I+F   +    + C  L++ G++  AIH +  Q  R + L NF  G   ++VA
Sbjct: 249 EKGSDRVIVFARTRSRADSTCRRLKRAGYTAEAIHSDRSQAQRRRALDNFAAGKTGVLVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+ +V +V N+D+P + E+Y+HRIGRTGRAG  G A + V+ E    +  IE
Sbjct: 309 TDVLARGIDVEEVDYVVNYDLPTQPEDYVHRIGRTGRAGAAGFAVSFVSPETADALRDIE 368

Query: 362 KLIEKKVDWLN-GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           KLI++ +  +      +     E    A    AR++  I Q +     R++  +  +   
Sbjct: 369 KLIKRPIPEMEVPSFDAEQAAEEAAGKAARADARRDPEIKQAAKEMAARERKKAKAREQA 428

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
             +++ K +  ++  ++     +  +G  P     +  G+ N K
Sbjct: 429 QAEDAPKNAPKRKAPKK----PVASKGAQPN---RQQPGRANAK 465


>gi|219872069|ref|YP_002476444.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis SH0165]
 gi|219692273|gb|ACL33496.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis SH0165]
          Length = 441

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 133/380 (35%), Positives = 210/380 (55%), Gaps = 4/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F +L LSP+++ A+   GY +PT IQ +TIP  ++  DV G A TGTGKTA+F+LP + 
Sbjct: 6   TFEELDLSPELLQALEKKGYKRPTAIQQETIPPAMEGRDVLGSAPTGTGKTAAFLLPALQ 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVA+  E+  +  +L +A + GG+ ++   +   
Sbjct: 66  HLLDHPRRKPGPPRILILTPTRELAMQVAEQAEELTQFTSLKIATITGGVAYQNHGEVFN 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+  +         ++EIL+ DEADRML MGF    + I +   + + T
Sbjct: 126 TNQDLVVATPGRLQQYIQEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRWRKYT 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT+  EL       + N     ++   S  E  +      +A   +    L   L 
Sbjct: 186 WLFSATLEGELLVDFAERILNDPVQ-IDAEPSRRERKKIQQWYYHADNLEHKTKLLARLI 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  ++  I+F  ++++V  L  +L K+G     + G + Q  R + ++  K+G + ++V
Sbjct: 245 SEFEIERSIVFVRRRESVRELSETLRKRGIRSTYLEGEMAQTQRNQAIARLKDGVVNVLV 304

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV  V NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D K +  I
Sbjct: 305 ATDVAARGIDIDDVDFVINFDLPYSADTYLHRIGRTARAGKKGSAVSLVEAHDYKLLGKI 364

Query: 361 EKLIEKKVDWLNGDLSSLNP 380
           ++  E+ +      +  L P
Sbjct: 365 KRYTEEPLK--PRIIEGLAP 382


>gi|218676343|ref|YP_002395162.1| Superfamily II DNA and RNA helicase [Vibrio splendidus LGP32]
 gi|218324611|emb|CAV26155.1| Superfamily II DNA and RNA helicase [Vibrio splendidus LGP32]
          Length = 428

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 157/419 (37%), Positives = 237/419 (56%), Gaps = 13/419 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P++V A+ + GY K TPIQ K IP+  + HD+   AQTGTGKTA+F LP++
Sbjct: 1   MSFSSQGFAPELVKALTECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPVI 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +         IL PTRELAAQ+A N + Y K   L+V+ + GG    +Q ++
Sbjct: 61  QHLLNSGKKASRGTARGLILAPTRELAAQIAQNIKDYVKYTELSVSAVYGGNKMSSQVRQ 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H   G + + N+E LV DEADR+LDMGFI  ++ I   V  + 
Sbjct: 121 LELGVDILVATPGRLEEHLEAGNVSIANLEFLVFDEADRILDMGFINAVRKIMLDVETSP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L ++S + L+ PKRI V   +STA T+ H       +   +       
Sbjct: 181 QIMMFSATTSTQLNQLSVDILRKPKRISVERENSTAATVGHVVYPVDQERKTELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F N K+   ++   L+  G      HG+  Q +R + L +FKEG  ++
Sbjct: 239 -IGRKNWRQVLVFVNYKETANDVVKELKLDGIKAVLCHGDKAQSARRRALDDFKEGRARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V +E+   + 
Sbjct: 298 MVATDVAARGLDIEDLPHVINYDMPFLAEDYVHRIGRTGRAGKQGHAISFVNREEELTVV 357

Query: 359 AIEKLIEKKVDWL------NGDLSSLNPPLEKIDIAQHNHARKN--NPIPQKSTGFDRR 409
            +EKLI++++  +           +    L      ++   RKN  N  PQ     +RR
Sbjct: 358 QVEKLIQQRIRRVEQPGYEPKKRDAYIEKLNTKSAYKNRQGRKNNANEEPQDQASAERR 416


>gi|311071129|ref|YP_003976052.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
 gi|310871646|gb|ADP35121.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
          Length = 497

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 147/372 (39%), Positives = 222/372 (59%), Gaps = 6/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  LS  ++ A+   G+ + TPIQ +TIPL LQ  DV G AQTGTGKTA+F +P++
Sbjct: 3   ITFQDFQLSSDLMKAINRLGFEEATPIQAETIPLGLQHKDVIGQAQTGTGKTAAFGIPLV 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + +++ PTRELA QV++   K G++    V  + GG     Q + L+
Sbjct: 63  EKINP---ESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+LDH NR  L +NN+  +V+DEAD ML+MGFI  I++I S VP   QT
Sbjct: 120 KNPHIIVGTPGRLLDHINRRTLRLNNVNTVVMDEADEMLNMGFIEDIESILSNVPSEHQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +++++E F+ NP+ ++V     T   I+         + +K       L 
Sbjct: 180 LLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQ---FYLEVHERKKFDTLTRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM  L  FK+G I+++V
Sbjct: 237 DIQSPELAIVFGRTKRRVDELSEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFDVP   E+Y+HRIGRTGRAG+ G A T +   +   + AI
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAI 356

Query: 361 EKLIEKKVDWLN 372
           E+  ++K+D + 
Sbjct: 357 EQTTKRKMDRMK 368


>gi|300705099|ref|YP_003746702.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum
           CFBP2957]
 gi|299072763|emb|CBJ44116.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum
           CFBP2957]
          Length = 547

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 161/401 (40%), Positives = 236/401 (58%), Gaps = 13/401 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY +PTPIQ + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMPRTLIL--------EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
             L   +         +          PTRELAAQV ++   YGK   L   ++ GG+  
Sbjct: 61  HRLSAAQPNKVHTPHGMRYPVRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q   L+RG D+++ TPGR+LDH  +  + +++IE+LV+DEADRMLDMGFI  I+ I +
Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           ++P  RQ LLFSAT +D+++ +++  L  P  IEV   ++TAET+E        +  ++ 
Sbjct: 181 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKREL 240

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                 L   +     ++F   K     L   L + G S  AIHGN  Q +R + LS FK
Sbjct: 241 ---LAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGISALAIHGNKSQSARTRALSEFK 297

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT++++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  +
Sbjct: 298 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 357

Query: 353 DIKHIDAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHN 391
           +   +  IE+LI++++    L G         E I   ++N
Sbjct: 358 EHGLLRDIERLIKRELPRTVLEGFEPDPTIAPEPIPNGRNN 398


>gi|297538309|ref|YP_003674078.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera sp.
           301]
 gi|297257656|gb|ADI29501.1| DEAD/DEAH box helicase domain protein [Methylotenera sp. 301]
          Length = 466

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 161/425 (37%), Positives = 248/425 (58%), Gaps = 14/425 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL+P+++ A+ ++GY KPTPIQ + IP+ L   D+   AQTGTGKTA+F LP+L  
Sbjct: 12  FTDLGLAPELLKALTESGYTKPTPIQAQAIPVALAGGDLMAGAQTGTGKTAAFALPLLQK 71

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L    +    P        IL PTRELA QV ++ + Y K+  L   ++ GG+  + Q  
Sbjct: 72  LLPLASSSASPAKHPVRALILTPTRELAIQVEESVKAYAKHTPLRSLVVYGGVDIKTQTP 131

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G +VL+ TPGR+LDH  +  + +N ++ILV+DEADRMLDMGF+P ++ I +L+P  
Sbjct: 132 HLKTGVEVLVATPGRLLDHIEQKTIQLNQVQILVLDEADRMLDMGFMPDLKRILALLPKQ 191

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ L+FSAT +++++K+++ FL  P+ IEV   ++T + +            +   +   
Sbjct: 192 RQNLMFSATFSNDIKKLADEFLTKPQLIEVARSNATNDNVTQKVYEVAQSDKETLLIQLL 251

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      IIF   K     L  SL ++G +  AIHG+  Q+ R+K L  FK GTI 
Sbjct: 252 ---KAANASQVIIFTKTKITASRLSRSLAREGIAADAIHGDKTQQERIKALDGFKAGTIT 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V N+++P+  E+Y+HRIGRTGRAG  G A + V+ E+ K+I
Sbjct: 309 ALVATDVAARGLDISELPMVINYEIPSAPEDYVHRIGRTGRAGALGIAISFVSPEEDKYI 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IEKLI++++     +  +L  P  K   A+    ++++  P  +      K+    +K
Sbjct: 369 VEIEKLIKRQI---PKETVALEKPSSK---ARSTSNKESSYKPNNTQDASATKRMPPKKK 422

Query: 418 SHIPL 422
           S  P 
Sbjct: 423 SSDPW 427


>gi|254282473|ref|ZP_04957441.1| dead/deah box helicase domain protein [gamma proteobacterium
           NOR51-B]
 gi|219678676|gb|EED35025.1| dead/deah box helicase domain protein [gamma proteobacterium
           NOR51-B]
          Length = 433

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 164/419 (39%), Positives = 242/419 (57%), Gaps = 6/419 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTA--SFVLP 58
           M F DLGLS +++ AV   GY + TPIQ + IPLVL+  DV   AQTGTGKTA  +  L 
Sbjct: 1   MFFKDLGLSAELIRAVEKKGYSEATPIQQQAIPLVLRGKDVLAGAQTGTGKTAGFTLPLL 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                         PR L+L PTRELAAQV ++   YG       A++ GG+    Q +K
Sbjct: 61  QQLQNLHKPGHKSFPRVLVLTPTRELAAQVQESVRDYGAFLPFRSAVIFGGVSINPQKQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+++ TPGR+LDH  +  + +  IE LV+DEADRMLDMGFI  I+ I  ++P  R
Sbjct: 121 LIRGVDIIVATPGRLLDHVQQRSVDLTRIETLVLDEADRMLDMGFIHDIKRIVKIIPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT + E++ ++  FL++P+ I+V   ++  + +       Y    K+   L   
Sbjct: 181 QTLLFSATFSREIKGLAAEFLRSPEEIQVTPQNTATDLV---TQVVYPVDKKRKRELLSQ 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  +  +IF   K +   L   L+K G +  AIHGN  Q +R + L++FK GTI+ 
Sbjct: 238 QIGENNWQQVLIFTRTKHSANRLAEQLDKDGITAAAIHGNKSQGARTRALADFKNGTIRA 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV NF++PN AE+Y+HRIGRT RAG+ G A +LV  +++K + 
Sbjct: 298 LVATDIAARGIDIQKLPHVVNFELPNTAEDYVHRIGRTARAGQEGSAISLVCVDELKLLK 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            IEKL  + ++ +      ++P + K +  Q+   ++       S G  R     SS +
Sbjct: 358 DIEKLTGQNIEKVYLPGFEVDPTI-KAEAIQNGGGKRGGGGRGNSQGRKRPGAGRSSAR 415


>gi|146338133|ref|YP_001203181.1| ATP-dependent RNA helicase [Bradyrhizobium sp. ORS278]
 gi|146190939|emb|CAL74944.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
           (rhlE gene) [Bradyrhizobium sp. ORS278]
          Length = 473

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 167/469 (35%), Positives = 247/469 (52%), Gaps = 19/469 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L+  +  A+ +  Y  PTPIQ +TIPL LQ  DV GIAQTGTGKTASF LP+L 
Sbjct: 3   SFQDFNLADALTRALKEENYTTPTPIQAQTIPLALQGRDVIGIAQTGTGKTASFALPILH 62

Query: 62  ILEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L + R + +     +L   PTREL+ Q+ D+F  YG++  L+  L IGG+P   Q + +
Sbjct: 63  RLLENRIKPQPKTARVLVLSPTRELSGQILDSFNTYGRHIRLSSTLAIGGVPMGRQVRAV 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR+LD      L ++++E LV+DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 123 MPGVDVLVATPGRLLDLVQGNALKLSHVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM  ++ +++++ L++P R+ V   SST E I    +                 
Sbjct: 183 TLFFSATMPKDIAELADSMLRDPARVAVTPVSSTVERIAQRVIQVDHSAKPSLLAQLL-- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              + +   ++F   K     +   LEK G    AIHGN  Q  R + L+ F+ G I+ +
Sbjct: 241 -KNEPVNRALVFTRTKHGADKVVKGLEKAGIPAQAIHGNKSQNHRERTLAAFRTGEIRTL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           VA+D+AARG+D+  V HV NFD+PN  E Y+HRIGRT RAG  G A +LVA  +++ ++ 
Sbjct: 300 VATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTARAGADGVAISLVAGADEMSYLR 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IE+L +  +            P ++ D A     ++ N       G    + N     +
Sbjct: 360 DIERLTKTTLPR-----EDRRTPGQR-DAAPAGQHQRQNGHGGGRPGMQNARSNEGGNAA 413

Query: 419 HIPLKESEKISKLQ-----QDIQENDADSLGFRGNMP--AFMLPKNRGK 460
             P +     +K+      +   +      G  G++   AF+  + R K
Sbjct: 414 KGPRRRRRSNAKMPPLPGNRQEPQRPPQGGGKAGSIQGVAFLHREGRPK 462


>gi|262381688|ref|ZP_06074826.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_33B]
 gi|262296865|gb|EEY84795.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_33B]
          Length = 421

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 158/424 (37%), Positives = 240/424 (56%), Gaps = 8/424 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   +  A++  GY  PTPIQ + IP+V Q +D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFEDLDLIEPICKALVQEGYTTPTPIQSEAIPIVSQGYDLLGCAQTGTGKTAAFSIPII 60

Query: 61  TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L   + +      + LIL PTRELA Q+ ++F  YG+   L   ++ GG+  + Q + 
Sbjct: 61  QRLYLQKKKGYKRGIKALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG D+LI TPGR+LD   +G + ++ +E  V+DEADRMLDMGFI  I+ I  L+P  R
Sbjct: 121 LERGIDILIATPGRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+++++   L  P+++EV   SST + I+                  + 
Sbjct: 181 QSLFFSATMPPEIERLAGTILSEPQKVEVTPASSTVDAIDQSVYFVEKAEKINL---LKS 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L     +++ +IF   K     +   L K      AIHGN  Q +R + L+NFK+ T ++
Sbjct: 238 LLENPELESVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+  + HV N+++PN  E Y+HRIGRTGRAGR G AF+    E++  + 
Sbjct: 298 LIATDIAARGIDVDHLTHVINYELPNVPETYVHRIGRTGRAGREGVAFSFCDAEEVPLLK 357

Query: 359 AIEKLIEKKVDWLNG---DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            I+KLI K+V    G   +   +   + +   A    +++ N    K  G   R K  ++
Sbjct: 358 DIQKLIGKEVPVAGGHMYETKEVKAAVAEKKEAIKQESKRRNMFGSKRDGSYWRNKKRAA 417

Query: 416 QKSH 419
             S 
Sbjct: 418 NSSK 421


>gi|330822482|ref|XP_003291680.1| hypothetical protein DICPUDRAFT_156303 [Dictyostelium purpureum]
 gi|325078116|gb|EGC31785.1| hypothetical protein DICPUDRAFT_156303 [Dictyostelium purpureum]
          Length = 397

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 126/376 (33%), Positives = 208/376 (55%), Gaps = 5/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL  +++  + + G+ KP+ IQ + I  +++  D    AQ+GTGKTA+F +  L 
Sbjct: 24  TFESMGLGEELLRGIYNYGFEKPSAIQQRAIVPIIKGRDTIAQAQSGTGKTATFSIGALQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     VR P+ LIL PTRELA Q+        +  N+ V   +GG       KKLE 
Sbjct: 84  CIDVN---VRSPQALILSPTRELAQQIQKVALALSEYMNVQVHACVGGKNMSDDIKKLET 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+LD   R  L   +I+++++DEAD ML +GF   I ++   +P   Q +
Sbjct: 141 GVHIVSGTPGRVLDMITRKSLSTRHIKMMILDEADEMLSLGFQQQINDVYRYLPEATQIV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+T ++  ++E F+  P RI +     T + I+  FV+   +  K   L    +  
Sbjct: 201 LVSATLTQDVVTMTEKFMSKPVRILLKRDELTLDGIKQFFVSVEKEEWKFGTLCD--IYD 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN KK V  L   + +  F+V ++HG++ Q+ R +I+ +F+ G  ++++ 
Sbjct: 259 SLTITQAVIFCNTKKKVDQLTEKMREANFTVASMHGDMVQKEREEIIKSFRSGENRVLIT 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENY+HRIGR+GR GR G A   V   DI+ +  IE
Sbjct: 319 TDILARGIDVQQVSLVINYDLPIDRENYLHRIGRSGRFGRKGVAINFVKNSDIRILRDIE 378

Query: 362 KLIEKKVDWLNGDLSS 377
           +    ++D +  + + 
Sbjct: 379 QFYSTQIDEMPMNFAD 394


>gi|323701905|ref|ZP_08113575.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533209|gb|EGB23078.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum nigrificans
           DSM 574]
          Length = 532

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 150/382 (39%), Positives = 226/382 (59%), Gaps = 8/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L   +V  ++D G+ +PTPIQ   +PLVL  HD+ G AQTGTGKTA+F +P++  
Sbjct: 10  FGNLELDSCIVQGLVDMGFEEPTPIQQLAVPLVLAGHDIIGQAQTGTGKTAAFGIPLVAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     R R  + +I+ PTRELA QV +   K G+     V  + GG   E Q + L +G
Sbjct: 70  LNF---RKRGVQAIIITPTRELAIQVGEEINKIGRYRRARVLPIYGGQSIERQIRSLRQG 126

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+LDH  R  L ++ + ++V+DEAD MLDMGFI  I+ I    P  RQTLL
Sbjct: 127 VHVVVGTPGRLLDHLRRQTLKLDQVSMVVLDEADEMLDMGFIDDIEEILRHTPPERQTLL 186

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E+ +++  ++ +PK + V+  + TA +IE      Y    K        +   
Sbjct: 187 FSATMPEEISRLARQYMTDPKFVTVSKANITAPSIEQ---IYYEAPEKHKLEALCRILDT 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +  GI+FC  K+ V  L   L+ +G++  ++HG++ Q+ R  ++  F+ G ++L+VA+
Sbjct: 244 TEITQGIVFCRTKRGVDELVAGLQARGYTAVSLHGDLSQQQRNTVMRQFRSGEVELLVAT 303

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV N+D+P   E Y+HRIGRTGRAGR G A T++   + + +  IE 
Sbjct: 304 DVAARGLDIEGVSHVINYDIPQDPEFYVHRIGRTGRAGRSGVAITIITPREYRQLRLIEN 363

Query: 363 LIEKKVDWLNGDLSSLNPPLEK 384
           L + ++    G L S+    E+
Sbjct: 364 LTKTRIKR--GRLPSIADVAER 383


>gi|310779133|ref|YP_003967466.1| DEAD/DEAH box helicase domain protein [Ilyobacter polytropus DSM
           2926]
 gi|309748456|gb|ADO83118.1| DEAD/DEAH box helicase domain protein [Ilyobacter polytropus DSM
           2926]
          Length = 526

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 146/411 (35%), Positives = 224/411 (54%), Gaps = 20/411 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F  LGLS K +  +L+ G+ KP+PIQ  TIP++L    DV G AQTGTGKTA+F LP+L
Sbjct: 6   EFKALGLSEKTLRPLLEKGFEKPSPIQALTIPVLLNGDKDVIGQAQTGTGKTAAFSLPIL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +EK    ++     +L PTRELA QVA+         NL +A + GG   E Q K+L 
Sbjct: 66  EKIEKSTGSIQAI---VLAPTRELAVQVAEEMNSLSHGRNLRIAPVYGGQSIEFQIKQLR 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR++D  NR  L ++ I+  ++DEAD ML+MGF+  ++ I       ++ 
Sbjct: 123 RGIDVVVGTPGRVIDLMNRKILKLDKIDYFILDEADEMLNMGFLEDVEMILQNTSKDKRM 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+ +V++   ++    EV     T  T        +    K        + 
Sbjct: 183 LFFSATMPKEILRVAK---KHMGEHEVLAVKKTELTTNLTDQIYFEVKEKDKFEALCRIM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +    GI+FC  K +V  L   L+ +G+    +HG+I Q  R   L  FKE  I +++
Sbjct: 240 DLELDFYGIVFCRTKNDVNVLVGKLQDRGYDSEGLHGDISQNHREITLKRFKEKKINVLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T +   + + I  I
Sbjct: 300 ATDVAARGIDVNDLSHVINYAIPQDPESYVHRIGRTGRAGKEGTAITFITPSEYRKILQI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKID-IAQHNHARKNNPIPQKSTGFDRRK 410
           +++++ ++              EK+  + +   A+KN    + +   D RK
Sbjct: 360 QRIVKTEIRK------------EKVPGVKEVIQAKKNRMREELNEILDERK 398


>gi|240115845|ref|ZP_04729907.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
 gi|260440339|ref|ZP_05794155.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI2]
 gi|268601522|ref|ZP_06135689.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|291043632|ref|ZP_06569348.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|268585653|gb|EEZ50329.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|291012095|gb|EFE04084.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 462

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 157/453 (34%), Positives = 232/453 (51%), Gaps = 10/453 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QRLTKRSEKPGKGPRALVLAPTRELAAQVEKNALAYAKNMRWFRTVSIVGGTSFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR+ D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    ++ + IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L++ ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK I +K+  L  +      P  K   A      K     +KS G  RR  +   ++ 
Sbjct: 360 KIEKYINRKLPELTIE---GMEPTRKRKSAGGKPKGKGGWGDRKSGG--RRGDHKPGKEG 414

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
                  E   K             GF+G   A
Sbjct: 415 FGGKTRGEGFKKEGFKKDSFKKTGEGFKGKRKA 447


>gi|162448970|ref|YP_001611337.1| ATP-independent RNA helicase [Sorangium cellulosum 'So ce 56']
 gi|161159552|emb|CAN90857.1| ATP-independent RNA helicase [Sorangium cellulosum 'So ce 56']
          Length = 624

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 148/368 (40%), Positives = 215/368 (58%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LG++P ++  + + GY +PTPIQ + IP +L   D+ G A TGTGKTA+F LP+L 
Sbjct: 9   SFAALGIAPALLGVLAELGYEEPTPIQREAIPHLLTGRDLLGQAATGTGKTAAFALPLLQ 68

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            LE G    R+P  L+L PTRELA QVA+   +YG+   + V  + GG PF  Q + L R
Sbjct: 69  RLEIGGEPPRLPEALVLVPTRELAMQVAEAMHRYGRRLGVQVLSVYGGQPFGQQLRALRR 128

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR LDH  RG L ++ I  +V+DEAD MLDMGF   ++ I S  P  RQT+
Sbjct: 129 GVHVVVATPGRTLDHIGRGTLALDGIRTVVLDEADEMLDMGFAEALEEILSATPGARQTV 188

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +  ++   L+ P R+++    +    +       Y       +     +  
Sbjct: 189 LFSATLPPRIAAIAGRHLREPVRVKIAGEKAAPGELPRVRQTAYIVPRAHKSAALTRVLD 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + I+FC  +  V  L  +L  +G+   A+HG   Q  R ++++ F+ GT +L+VA
Sbjct: 249 MEDPSSAILFCRTRNEVDELTEALRARGYEAQALHGGFSQEHRDRVMARFRAGTAELLVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV N+DVP   E Y+HRIGRTGRAGR G A TLV   +   I  +E
Sbjct: 309 TDVAARGLDIEHVSHVINYDVPCAPEVYVHRIGRTGRAGREGAAITLVEPREHYLIRNVE 368

Query: 362 KLIEKKVD 369
           +L  ++++
Sbjct: 369 RLTGQRIE 376


>gi|229020923|ref|ZP_04177614.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1273]
 gi|229026894|ref|ZP_04183218.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1272]
 gi|228734397|gb|EEL85067.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1272]
 gi|228740374|gb|EEL90681.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1273]
          Length = 481

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 142/411 (34%), Positives = 237/411 (57%), Gaps = 14/411 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFADYALSKEIVRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLACLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++K+S  ++ +P  IE+     T + IEH     +    ++   L + + +
Sbjct: 182 LFSATLPEDVEKLSRKYMDSPTHIEIKAAGITTDKIEH---TLFETREEEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVFKQLDRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNKGKAITFITPYENRFLEEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK--NNPIPQKSTGFDRRK 410
           + I  ++        +L P  E++   +     K    PI +K    D  K
Sbjct: 359 EYIGFEIP------KALAPSKEEVMKGKAVFEEKIHAKPIIKKDKNADLNK 403


>gi|116628255|ref|YP_820874.1| superfamily II DNA/RNA helicase [Streptococcus thermophilus LMD-9]
 gi|116101532|gb|ABJ66678.1| Superfamily II DNA and RNA helicase [Streptococcus thermophilus
           LMD-9]
          Length = 527

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 151/373 (40%), Positives = 224/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  +  AV+ AG+ +P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L 
Sbjct: 61  DKIRT---EENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +NNIE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEKRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T   ++  F+    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +G     IHG++DQ  R++I+ +FK G I ++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGSRAEGIHGDLDQNKRLRIIRDFKNGQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLGII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKS 367


>gi|240016422|ref|ZP_04722962.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA6140]
          Length = 462

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 157/453 (34%), Positives = 232/453 (51%), Gaps = 10/453 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QRLTKRSEKPGKGPRALVLAPTRELAAQVEKNALAYAKNMRWFRTVSIVGGTSFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR+ D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    ++ + IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L++ ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK I +K+  L  +      P  K   A      K     +KS G  RR  +   ++ 
Sbjct: 360 KIEKYINRKLPELTIE---GMEPTRKRKSASGKPKGKGGWGDRKSGG--RRGDHKPGKEG 414

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
                  E   K             GF+G   A
Sbjct: 415 FGGKTRGEGFKKEGFKKDSFKKTGEGFKGKRKA 447


>gi|149917594|ref|ZP_01906091.1| putative ATP-dependent RNA helicase RhlE [Plesiocystis pacifica
           SIR-1]
 gi|149821657|gb|EDM81055.1| putative ATP-dependent RNA helicase RhlE [Plesiocystis pacifica
           SIR-1]
          Length = 437

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 155/409 (37%), Positives = 227/409 (55%), Gaps = 4/409 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV +AGY  PTPIQ + IP  +   D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MSFETLGLAKPLLRAVREAGYETPTPIQTQAIPSAIAGRDILGCAQTGTGKTAAFSLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+         R LI+ PTRELAAQ+  N   Y K+  L   ++ GG+  + Q  +L 
Sbjct: 61  QRLDADPPDEPRIRALIVSPTRELAAQIGANIGSYAKHLELWHTVIFGGVKDKPQIAELR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVL+ TPGR+LD   RG + +  +E+ V+DEAD+MLDMGF+P I+ I   +P  RQT
Sbjct: 121 RGVDVLVATPGRLLDLMGRGHIDLKRVEVFVLDEADQMLDMGFLPDIRRIVKALPSKRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   +++++   L +P  + V   S  A+  +  +        K    L +   
Sbjct: 181 LFFSATMPSAIKELAATLLDDPVEVAVARVSEPADVDQRLYFVDKGNKRKLLVDLLR--- 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  ++   ++F   K     +   L   G S  AIHGN  Q +R + L  FK G ++++V
Sbjct: 238 ADPSVSRSLVFSRTKHGANRIAKHLSAAGVSSAAIHGNKSQNARTRALEAFKGGELRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV NFD+PN  E YIHRIGRT RAG  G A +    E+  ++  I
Sbjct: 298 ATDIAARGLDISKVSHVINFDLPNVPETYIHRIGRTARAGNSGIALSFCDVEERAYLVDI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKI-DIAQHNHARKNNPIPQKSTGFDR 408
           E+L+   ++ +       +  L ++ D+A      K     +K +G ++
Sbjct: 358 ERLLRAHIERIEDHGYPPSQALPELTDLAARRSGSKPGGGAKKKSGANK 406


>gi|257790993|ref|YP_003181599.1| DEAD/DEAH box helicase domain-containing protein [Eggerthella lenta
           DSM 2243]
 gi|325830863|ref|ZP_08164247.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
 gi|257474890|gb|ACV55210.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
 gi|325487270|gb|EGC89713.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
          Length = 506

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 146/464 (31%), Positives = 242/464 (52%), Gaps = 12/464 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS + + AV   GY  PTP+Q + IPL L+  D+   A+TGTGKTA+F LP L 
Sbjct: 3   QFNELGLSDQALEAVARLGYEAPTPVQEQAIPLALEGRDLIAAAKTGTGKTAAFSLPSLD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   +   + P  L++ PTRELA Q+ +       + +  +  ++GG+ +  Q  KL+ 
Sbjct: 63  RLGHAKG-GQGPLMLVVTPTRELAQQIGEVCTAIAASTHHRILTVVGGLSYTPQINKLKH 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+LI TPGR++D   +G + + ++E+LV+DEADRMLDMGF P ++ I    P +RQTL
Sbjct: 122 GVDILIATPGRLVDLMEQGAVRLGDVEVLVLDEADRMLDMGFWPAMKKIIGATPASRQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++      L +P  +     +   ET +                L + + +
Sbjct: 182 LFSATIDASIKNSVGKLLHDPAFV---EIAHKGETADTVEQYIVHVAQTLKPALLKAVLA 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      I+F   +    + C  L++ G++  AIH +  Q  R + L NF  G   ++VA
Sbjct: 239 EKGSDRVIVFARTRSRADSTCRRLKRAGYTAEAIHSDRSQAQRRRALDNFAAGKTGVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+ +V +V N+D+P + E+Y+HRIGRTGRAG  G A + V+ E    +  IE
Sbjct: 299 TDVLARGIDVEEVDYVVNYDLPTQPEDYVHRIGRTGRAGAAGFAVSFVSPETADALRDIE 358

Query: 362 KLIEKKVDWLN-GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           KLI++ +  +      +     E    A    AR++  I Q +     R++  +  +   
Sbjct: 359 KLIKRPIPEMEVPSFDAEQAAEEAAGKAARADARRDPEIKQAAKEMAARERKKAKAREQA 418

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
             +++ K +  ++  ++     +  +G  P     +  G+ N K
Sbjct: 419 QAEDAPKNAPKRKAPKK----PVASKGAQPN---RQQPGRANAK 455


>gi|45361669|ref|NP_989409.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Xenopus (Silurana)
           tropicalis]
 gi|40787696|gb|AAH64887.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Xenopus (Silurana)
           tropicalis]
          Length = 479

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 156/464 (33%), Positives = 236/464 (50%), Gaps = 13/464 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGLS  ++      G +KP+P+Q   IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FSRLGLSSWLIDQCSQLGILKPSPVQENCIPPILEGRDCMGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  LSE---DPFGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQN---ITSLVPFTR 178
             V+I TPGR+ DH        +  I  LV+DEADR+L+ G   + Q+   I   VP  R
Sbjct: 121 PHVVIATPGRLADHIRSSNTFSIKKIRFLVLDEADRLLEQGCTDFTQDLQVILEAVPAQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKCALLQQ 237
           QTLLFSAT+TD LQ++    +  P   E  +   T E   +   +            L Q
Sbjct: 181 QTLLFSATLTDTLQELKTIAMNKPFFWESTSEVRTVEQLDQRYILVPEKVKDAYLVHLIQ 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             Q +    + +IF N  K    L   L +  F   A+H  + Q+ R   L+ FK    +
Sbjct: 241 KFQDEHEDWSIMIFTNTCKTCQILNMMLREFSFPSVALHSMMKQKQRFAALAKFKSSVFK 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARGLDIP V  V N + P   + YIHR+GRT RAGR+G A TLV + DI  +
Sbjct: 301 ILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGMAITLVTQYDIHLV 360

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            AIE+ I  K++      S +   L      Q N  R+   I  + T FD +K+    ++
Sbjct: 361 HAIEEQINMKLEEFKVKESEVLKIL-----TQVNVTRRECEIKLECTDFDEKKEINKRKQ 415

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKL 461
             +  K+ +  +K + ++++       F+ ++   M  K   ++
Sbjct: 416 LILEGKDPDLEAKRKAELEKIKKQKKKFKEHIQETMQKKREAQV 459


>gi|253699589|ref|YP_003020778.1| DEAD/DEAH box helicase [Geobacter sp. M21]
 gi|251774439|gb|ACT17020.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
          Length = 453

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 150/390 (38%), Positives = 226/390 (57%), Gaps = 8/390 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF    L PKV   +   GYV PTPIQ++ IP V+   DV G+AQTGTGKTA+F LPML
Sbjct: 1   MDFKQFNLHPKVQAGIEAMGYVTPTPIQLQAIPSVVSGQDVLGLAQTGTGKTAAFGLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +        R L+L PTRELA Q+ +     GK   L    + GG+    Q KKL+
Sbjct: 61  HRLVQE--ERGHVRGLVLAPTRELAEQINEALNGMGKQTRLRSITVYGGVNINTQIKKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA++++  PGR+LDH ++G + ++ +EILV+DEAD+M DMGF+P ++ I   +P  RQ 
Sbjct: 119 EGAEIVVACPGRLLDHISQGTIDLSKVEILVLDEADQMFDMGFLPDVRKILRALPGKRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSATM D++++++   L+NP  ++V+  +  A      +       +     + +   
Sbjct: 179 LMFSATMPDDIRRLAHEILRNPVTVQVSRTAPAATVSHALYPVGQHLKTPLLFEMLK--- 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ +IF   K     +   LEK G+   ++ GN+ Q  R   L  F++GT Q+MV
Sbjct: 236 -HTDTESVLIFTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIMV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+D+P+  E Y HRIGRTGRA + G AFT+V  ED   + AI
Sbjct: 295 ATDIAARGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTSEDDYTVRAI 354

Query: 361 EKLIEKKVD--WLNGDLSSLNPPLEKIDIA 388
           EK++  K++     G   ++  P +  + A
Sbjct: 355 EKVLGTKIERRRFEGFDYAVPAPQKDAEFA 384


>gi|182680762|ref|YP_001828922.1| DEAD/DEAH box helicase domain-containing protein [Xylella
           fastidiosa M23]
 gi|182630872|gb|ACB91648.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23]
 gi|307579229|gb|ADN63198.1| DEAD/DEAH box helicase domain-containing protein [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 609

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 144/371 (38%), Positives = 220/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV   GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+LT 
Sbjct: 11  FADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
               + +   P+ L+L PTRELA QVA+ F++Y  +     V  + GG  +  Q   L+R
Sbjct: 71  TVLNQVK---PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P +RQ  
Sbjct: 128 GVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  +++++++ +LQ+P  + + T ++TA  I   +      +          +++
Sbjct: 188 LFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVET 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   IIF   K     L   L+ +G +  AI+G++ Q  R + +   K+G + ++VA
Sbjct: 248 FDAM---IIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   V   +   +  IE
Sbjct: 305 TDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIE 364

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 365 RATHQPIEAMQ 375


>gi|59801077|ref|YP_207789.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|194098823|ref|YP_002001886.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239999112|ref|ZP_04719036.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae 35/02]
 gi|240113089|ref|ZP_04727579.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
 gi|240125882|ref|ZP_04738768.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           SK-92-679]
 gi|254493889|ref|ZP_05107060.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268594948|ref|ZP_06129115.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268599176|ref|ZP_06133343.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268684482|ref|ZP_06151344.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|293398939|ref|ZP_06643104.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
 gi|59717972|gb|AAW89377.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|193934113|gb|ACF29937.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512929|gb|EEH62274.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548337|gb|EEZ43755.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268583307|gb|EEZ47983.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268624766|gb|EEZ57166.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|291610353|gb|EFF39463.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
 gi|317164404|gb|ADV07945.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 462

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 157/453 (34%), Positives = 232/453 (51%), Gaps = 10/453 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QRLTKRSEKPGKGPRALVLAPTRELAAQVEKNALAYAKNMRWFRTVSIVGGTSFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR+ D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    ++ + IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L++ ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK I +K+  L  +      P  K   A      K     +KS G  RR  +   ++ 
Sbjct: 360 KIEKYINRKLPELTIE---GMEPARKRKSAGGKPKGKGGWGDRKSGG--RRGDHKPGKEG 414

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
                  E   K             GF+G   A
Sbjct: 415 FGGKTRGEGFKKEGFKKDSFKKTGEGFKGKRKA 447


>gi|28198133|ref|NP_778447.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
 gi|28056193|gb|AAO28096.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
          Length = 615

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 144/371 (38%), Positives = 220/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV   GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+LT 
Sbjct: 17  FADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTR 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
               + +   P+ L+L PTRELA QVA+ F++Y  +     V  + GG  +  Q   L+R
Sbjct: 77  TVLNQVK---PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKR 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P +RQ  
Sbjct: 134 GVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVA 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  +++++++ +LQ+P  + + T ++TA  I   +      +          +++
Sbjct: 194 LFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVET 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   IIF   K     L   L+ +G +  AI+G++ Q  R + +   K+G + ++VA
Sbjct: 254 FDAM---IIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVA 310

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   V   +   +  IE
Sbjct: 311 TDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIE 370

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 371 RATHQPIEAMQ 381


>gi|71898665|ref|ZP_00680835.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
 gi|71731612|gb|EAO33673.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
          Length = 609

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 144/371 (38%), Positives = 220/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV   GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+LT 
Sbjct: 11  FADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
               + +   P+ L+L PTRELA QVA+ F++Y  +     V  + GG  +  Q   L+R
Sbjct: 71  TVLNQVK---PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P +RQ  
Sbjct: 128 GVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  +++++++ +LQ+P  + + T ++TA  I   +      +          +++
Sbjct: 188 LFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVET 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   IIF   K     L   L+ +G +  AI+G++ Q  R + +   K+G + ++VA
Sbjct: 248 FDAM---IIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   V   +   +  IE
Sbjct: 305 TDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIE 364

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 365 RATHQPIEAMQ 375


>gi|71276350|ref|ZP_00652627.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Dixon]
 gi|71901364|ref|ZP_00683458.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
 gi|170729445|ref|YP_001774878.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
 gi|71162812|gb|EAO12537.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Dixon]
 gi|71728863|gb|EAO31000.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
 gi|167964238|gb|ACA11248.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
          Length = 609

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 144/371 (38%), Positives = 220/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV   GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+LT 
Sbjct: 11  FADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
               + +   P+ L+L PTRELA QVA+ F++Y  +     V  + GG  +  Q   L+R
Sbjct: 71  TVLNQVK---PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P +RQ  
Sbjct: 128 GVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  +++++++ +LQ+P  + + T ++TA  I   +      +          +++
Sbjct: 188 LFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVET 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   IIF   K     L   L+ +G +  AI+G++ Q  R + +   K+G + ++VA
Sbjct: 248 FDAM---IIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   V   +   +  IE
Sbjct: 305 TDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIE 364

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 365 RATHQPIEAMQ 375


>gi|303315651|ref|XP_003067830.1| ATP-dependent RNA helicase DBP2, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240107506|gb|EER25685.1| ATP-dependent RNA helicase DBP2, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|320034056|gb|EFW16002.1| ATP-dependent RNA helicase DBP2 [Coccidioides posadasii str.
           Silveira]
          Length = 545

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 132/380 (34%), Positives = 210/380 (55%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ KPTPIQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 129 TFDEAGFPQYVISEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 188

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 189 HINAQPLLGPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQIRDL 248

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 249 SRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 308

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T ++SAT   E+++++ +FL +  ++ + +   +A       V   + + K+  ++  L 
Sbjct: 309 TCMWSATWPKEVRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMINHLE 368

Query: 240 QSQDTMKNGIIFCNQKKNV-VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  D  K+ I+     K V  ++   L + G+   +IHG+  Q  R  +L+ FK G   +
Sbjct: 369 RIMDDKKSKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPI 428

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A TL   ++ K   
Sbjct: 429 MVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQAR 488

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    ++  L+ +
Sbjct: 489 DLVNILTESKQQIDPRLAEM 508


>gi|15836857|ref|NP_297545.1| ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
 gi|9105065|gb|AAF83065.1|AE003878_13 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
          Length = 614

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 144/371 (38%), Positives = 220/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV   GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+LT 
Sbjct: 17  FADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTR 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
               + +   P+ L+L PTRELA QVA+ F++Y  +     V  + GG  +  Q   L+R
Sbjct: 77  TVLNQVK---PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKR 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P +RQ  
Sbjct: 134 GVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVA 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  +++++++ +LQ+P  + + T ++TA  I   +      +          +++
Sbjct: 194 LFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVET 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   IIF   K     L   L+ +G +  AI+G++ Q  R + +   K+G + ++VA
Sbjct: 254 FDAM---IIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVA 310

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   V   +   +  IE
Sbjct: 311 TDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIE 370

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 371 RATHQPIEAMQ 381


>gi|68071941|ref|XP_677884.1| eukaryotic initiation factor [Plasmodium berghei strain ANKA]
 gi|56498165|emb|CAH98223.1| eukaryotic initiation factor, putative [Plasmodium berghei]
          Length = 390

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 191/377 (50%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G+   ++  +   G+ +P+ IQ + I  +L   DV   +Q+GTGKT  F +  L 
Sbjct: 18  SFESIGIDEGLLRGIYAYGFDRPSAIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGALN 77

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + +     ++    IL PTRELA Q            ++TV   IGG       K L  
Sbjct: 78  CVNRNLNETQII---ILSPTRELAEQTQKVCLALADYIHVTVYCCIGGKKLSDDIKALNN 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGRI    N   L    I+ LVIDEAD ML+ GF   + +I   +    Q +
Sbjct: 135 GVHIISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPNTQIV 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ NP +I V     T E I+  F++   +  K        L  
Sbjct: 195 LSSATLPHEVLEITNKFMHNPVKILVKRDELTLEGIKQFFISIEKEQWKYET--LADLYE 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   ++FCN K  V  L   +++  F+VC +H  + Q  R  I+  F++   +++++
Sbjct: 253 SLTITQAVVFCNTKLKVDWLAKKMQESNFTVCKMHAGMSQSERDDIMLKFRQCKYRVLIS 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+  RGLD+ +V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DIK +  IE
Sbjct: 313 TDIWGRGLDVHEVSLVVNYDLPNSRECYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIE 372

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 373 QFYSTQIDEMPMNITEL 389


>gi|317132017|ref|YP_004091331.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315469996|gb|ADU26600.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 530

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 143/400 (35%), Positives = 234/400 (58%), Gaps = 18/400 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLS  V+ A+   G+ +P+ IQ + IP++L+ +DV G AQTGTGKT ++  P++++
Sbjct: 6   FAKLGLSEDVLKAIDLMGFEEPSQIQTQAIPVILEGNDVIGQAQTGTGKTLAYSAPVISL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E G  +V+    LIL PTRELA QV D   +  +  + T   + GG P + Q + L++G
Sbjct: 66  MEHGPHQVQ---ALILVPTRELAIQVNDELVRINRFTHFTSIPVYGGQPIDRQIRALQKG 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGRILDH  RG +  +++   V+DE+D ML+MGFI  IQ +   +P  RQ+LL
Sbjct: 123 VDIVVATPGRILDHIRRGTVDFSHVRFFVLDESDEMLNMGFIDDIQAVLDTLPAERQSLL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  +++K+++  ++   +  V   S+   T+   F        +   L +  +   
Sbjct: 183 FSATMPMQIRKLAQQHMKPDVKNIVIAKSTLTATLTEQFYFEVKHRDRFETLCR--ILDV 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D  ++ IIFC  K+ V  L  +++ +G+ V  +HG++ Q  R   L  F++G +  +VA+
Sbjct: 241 DEPESAIIFCRTKRGVDELVENMQSRGYIVEGMHGDMGQNQRQNTLKKFRDGNLDFLVAT 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+++P  AE+Y+HRIGRTGRA R G A++LV   +   +  IE+
Sbjct: 301 DVAARGIDIENISHVINYELPEDAESYVHRIGRTGRANRTGIAYSLVTPREYIILKQIER 360

Query: 363 LI-----EKKVDWLNGD--------LSSLNPPLEKIDIAQ 389
           +       K++  +           L+ +   LEK D  +
Sbjct: 361 VTHGHIKRKEIPTVEDIYEVKYKNVLTKVKEELEKNDFEK 400


>gi|34495838|ref|NP_900053.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
 gi|34101693|gb|AAQ58061.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 472

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 160/388 (41%), Positives = 227/388 (58%), Gaps = 6/388 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + FADLGL+  ++ AV D GY  PTPIQ + IP VLQ  D+   AQTGTGKTA F LP +
Sbjct: 4   LTFADLGLADPLLRAVADTGYTTPTPIQAQAIPQVLQGGDLLAAAQTGTGKTAGFTLPLL 63

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++         PR L+L PTRELAAQV ++   Y K   L   ++ GG+    Q K L
Sbjct: 64  QLLMCSPSHHAGRPRALVLTPTRELAAQVEESVRTYSKYLPLKSLVMFGGVNINPQIKAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+L+ TPGR+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  RQ
Sbjct: 124 RAPVDILVATPGRLLDHVGQKTVDLSGVEILVLDEADRMLDMGFIHDIKKVLAKLPAQRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ +++  L NPK +EV   ++T E +             +  +     
Sbjct: 184 NLLFSATFSDEIKALADKLLDNPKLVEVARRNTTNELVSQKVHLVDRDKKTELLIHL--- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      ++F   K     L   L+K G    AIHGN  Q +R + L++FK G +Q++
Sbjct: 241 IREQNWFQVLVFTRTKHGANRLAEKLDKIGIPAAAIHGNKSQNARTRALADFKSGELQVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAG  G+A +LV  ++   +  
Sbjct: 301 VATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGSPGEALSLVCVDEFSFLRD 360

Query: 360 IEKLIEKKVDWL--NGDLSSLNPPLEKI 385
           IEKLI+  ++     G  + LN   E I
Sbjct: 361 IEKLIKMSIERFTVPGFEADLNVKPEPI 388


>gi|162148820|ref|YP_001603281.1| cold-shock DEAD box protein A-like protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787397|emb|CAP56992.1| Cold-shock DEAD box protein A homolog [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 483

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 204/477 (42%), Positives = 266/477 (55%), Gaps = 39/477 (8%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
            GY  PTPIQ + IP VL   DV G+AQTGTGKTASF LPML IL   RAR RMPR+LIL
Sbjct: 1   MGYRHPTPIQAQAIPYVLMGRDVLGVAQTGTGKTASFTLPMLEILSGSRARARMPRSLIL 60

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
           EPTRELA QVA+NF  YGK   L  ALLIGG     Q   L RG DVLI TPGR++D F 
Sbjct: 61  EPTRELALQVAENFVNYGKYLKLNHALLIGGESMAEQKDVLNRGVDVLIATPGRLIDLFE 120

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           RG LL+    +LVIDEADRMLDMGFIP I+ I +++   RQTL FSATM  E++++++ F
Sbjct: 121 RGGLLLTQTRLLVIDEADRMLDMGFIPDIEKIVAMLSPVRQTLFFSATMAPEIRRLADMF 180

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           LQNPK I V+ PSS A TIE   V       ++     + +   D ++N I+FCN+K++V
Sbjct: 181 LQNPKEITVSRPSSVATTIETGLVVVDEADKRRV---LRRMLRDDAVQNAIVFCNRKRDV 237

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             L  SL K  FS  A+HG++ Q  R   L  FK G ++++V SD+AARG+DI  + HVF
Sbjct: 238 DVLYKSLVKHDFSAGALHGDLPQSVRFATLERFKSGELKILVCSDVAARGIDIGGLSHVF 297

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD-LSS 377
           NFD+P  AE+Y+HRIGRTGRAGR G A++L    D    +AIE LI   +  L  + ++ 
Sbjct: 298 NFDLPFHAEDYVHRIGRTGRAGRSGHAYSLATPYDRALAEAIETLIGHAIPRLEVEGVTQ 357

Query: 378 LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS----------------------- 414
           L    E          R     P +  G   R +N +                       
Sbjct: 358 LEWSEESGTRGGRGRGRGKGKAPDRRGGKPDRARNDATPAEDKAEPVAPPQPVSAPVPPP 417

Query: 415 ------------SQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRG 459
                        +      ++ ++    +  I   +   +GF  ++PAFM    RG
Sbjct: 418 SPAAVPAEAASPRRSGPNRQRDRDRDRHAEDGISGQNGTVIGFGDDVPAFMTLPRRG 474


>gi|229065102|ref|ZP_04200395.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH603]
 gi|228716131|gb|EEL67850.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH603]
          Length = 481

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 142/411 (34%), Positives = 237/411 (57%), Gaps = 14/411 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFADYALSKEIVRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  +++K+S  ++ +P  IE+     T + IEH     +    ++   L + + +
Sbjct: 182 LFSATLPKDVEKLSRTYMDSPTHIEIKATGITTDKIEH---TLFEMREEEKLSLLKDITT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVFQQLKRINYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG +GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK--NNPIPQKSTGFDRRK 410
           + I  ++        +L P  E++   +     K    PI +K    D  K
Sbjct: 359 EYIGFEIP------KALAPSKEEVMKGKAVFEEKIHAKPIIKKDKNADLNK 403


>gi|90414421|ref|ZP_01222398.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
           3TCK]
 gi|90324534|gb|EAS41090.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
           3TCK]
          Length = 464

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 178/474 (37%), Positives = 261/474 (55%), Gaps = 21/474 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  ++ AV   GY  P+PIQ + IP V++  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLSAPILEAVAKQGYETPSPIQAQAIPAVIEGKDVMAAAQTGTGKTAGFTLPVL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G   +    R L+L PTRELAAQVA++   Y KN  L+ A++ GG+    Q  +L
Sbjct: 61  ERLSNGPRVKPNQVRALVLTPTRELAAQVAESVALYAKNLPLSSAVVFGGVKINPQMMRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR+LD +N+  +  + +E+LV+DEADRMLDMGFI  I+ + +++P  RQ
Sbjct: 121 RQGADVLVATPGRLLDLYNQRAVRFDQLEVLVLDEADRMLDMGFIRDIRKLLAVMPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++++++  + NP  I V   ++TA T++                     
Sbjct: 181 NLLFSATFSDEIRQLAKGLVNNPVEISVTPRNATAPTVKQWICPVDKSRKANLLTKLLKE 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       ++F   K     L   LE +G    AIHGN  Q +R K L+NFK   IQ++
Sbjct: 241 NNW---GQVLVFTKTKHGANRLTTHLEGRGIKAAAIHGNKSQGARTKALANFKSNEIQVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NF++P+ AE+Y+HRIGRTGRAG  G+A +LV  ++ K + A
Sbjct: 298 VATDIAARGLDIEQLPQVVNFELPHVAEDYVHRIGRTGRAGCEGQAISLVCADEYKDLAA 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ- 416
           IE+LI++ +  + ++G  +    P  ++D           PI  K    D R    S + 
Sbjct: 358 IERLIKQVLPREQVSGFEAVNKLPESRLDT---------RPIKPKKPKKDHRDGQRSGEN 408

Query: 417 -KSHIPLKESEK----ISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDKL 465
            K H P  ++++      K Q +     ++  G     P     K R      +
Sbjct: 409 AKGHKPQGKNKRHVGGQGKSQNESAGKPSNRSGAGTGAPKAKPAKRRAPRPASV 462


>gi|301310161|ref|ZP_07216100.1| putative ATP-dependent RNA helicase RhlE [Bacteroides sp. 20_3]
 gi|300831735|gb|EFK62366.1| putative ATP-dependent RNA helicase RhlE [Bacteroides sp. 20_3]
          Length = 421

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 158/424 (37%), Positives = 240/424 (56%), Gaps = 8/424 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   +  A++  GY  PTPIQ + IP+V Q +D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFEDLDLIEPIRKALVQEGYTTPTPIQSEAIPIVSQGYDLLGCAQTGTGKTAAFSIPII 60

Query: 61  TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L   + +      + LIL PTRELA Q+ ++F  YG+   L   ++ GG+  + Q + 
Sbjct: 61  QRLYLQKKKGYKRGIKALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG D+LI TPGR+LD   +G + ++ +E  V+DEADRMLDMGFI  I+ I  L+P  R
Sbjct: 121 LERGIDILIATPGRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+++++   L  P+++EV   SST + I+                  + 
Sbjct: 181 QSLFFSATMPPEIERLAGTILSEPQKVEVTPASSTVDAIDQSVYFVEKAEKINL---LKS 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L     +++ +IF   K     +   L K      AIHGN  Q +R + L+NFK+ T ++
Sbjct: 238 LLENPELESVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+  + HV N+++PN  E Y+HRIGRTGRAGR G AF+    E++  + 
Sbjct: 298 LIATDIAARGIDVDHLTHVINYELPNVPETYVHRIGRTGRAGREGVAFSFCDAEEVPLLK 357

Query: 359 AIEKLIEKKVDWLNG---DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            I+KLI K+V    G   +   +   + +   A    +++ N    K  G   R K  ++
Sbjct: 358 DIQKLIGKEVPVAGGHMYETKEVKAAVAEKKEAIKQESKRRNMFGSKRDGSYWRNKKRAA 417

Query: 416 QKSH 419
             S 
Sbjct: 418 NSSK 421


>gi|297797303|ref|XP_002866536.1| hypothetical protein ARALYDRAFT_496494 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312371|gb|EFH42795.1| hypothetical protein ARALYDRAFT_496494 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 588

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 135/378 (35%), Positives = 204/378 (53%), Gaps = 3/378 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D      ++ A+   G+ +PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP L  
Sbjct: 164 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 223

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       +   P  LIL PTRELA Q+ +   K+G    +    + GG P   Q + L 
Sbjct: 224 VSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLR 283

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   RQT
Sbjct: 284 RGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQT 343

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT   E++ ++  FL++P +  + +    A    +  +       K    L  LL+
Sbjct: 344 LLWSATWPREVESLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKY-NRLLTLLK 402

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF   K+    +   L   G+   AIHG+  Q  R ++L+ FK G   +M 
Sbjct: 403 QLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQPERDRVLAEFKSGRSPIMT 462

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+  V N+D PN  E+YIHRIGRTGRAG  G AFT    ++ K    +
Sbjct: 463 ATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFAREL 522

Query: 361 EKLIEKKVDWLNGDLSSL 378
            K++++    +   LS+L
Sbjct: 523 IKILQEAGQVVPPTLSAL 540


>gi|291241720|ref|XP_002740759.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Saccoglossus kowalevskii]
          Length = 1091

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 138/447 (30%), Positives = 227/447 (50%), Gaps = 15/447 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +   G+S KV+  +    Y KPTPIQ + IP ++   ++ GIA+TG+GKT +F+LPM   
Sbjct: 426 WVQCGVSKKVLDVLKKLKYEKPTPIQAQAIPAIMSGRNLIGIAKTGSGKTLAFLLPMFRH 485

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +           P  +I+ PTRELA Q+    +++ +  N+    + GG     Q  +L+
Sbjct: 486 IMDQDPLEADDGPLAVIMSPTRELAMQIYKECKRFCRALNVRGVCVYGGTGISEQIAELK 545

Query: 121 RGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D     +     +     +V+DEADRM DMGF P +  I   +   
Sbjct: 546 RGAEIIVCTPGRMIDMLTANSGRVTNLRRCTYVVLDEADRMFDMGFEPQVMRIVDNIRPD 605

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSAT   +++ ++   L  P  ++V   S     +E           +K   L +
Sbjct: 606 RQTVMFSATFPRQMEALARRILNKPLEVQVGGRSVVCSDVEQKV--AIVDDDQKFLTLLE 663

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL       + ++F  +++    L   L K  +S  ++HG IDQ  R   + +FK G I+
Sbjct: 664 LLGVYQEQGSVLVFVEKQEGADQLLKDLMKASYSCLSLHGGIDQYDRDSAIQDFKAGNIK 723

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L++A+ +AARGLD+  +  V N+D PN  E+Y+HR+GRTGRAG  G AFT +  E  ++ 
Sbjct: 724 LLIATSVAARGLDVKHLVLVVNYDCPNHYEDYVHRVGRTGRAGNKGNAFTFITPEQGRYA 783

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             I K  E        +L  L     +   A+     K++    K   FD  +K  +++K
Sbjct: 784 GDIIKAFEMADKKAPPELLQLWSEFTEKQKAEGKSIMKSSGFSGKGFKFDETEKELANEK 843

Query: 418 SHIPLKESEKISKLQQDIQENDADSLG 444
                   +K+ K    +Q++D +  G
Sbjct: 844 --------KKLQKAALGLQDSDEEDAG 862


>gi|32035479|ref|ZP_00135436.1| COG0513: Superfamily II DNA and RNA helicases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126209462|ref|YP_001054687.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
           L20]
 gi|303250442|ref|ZP_07336639.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307251483|ref|ZP_07533390.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|126098254|gb|ABN75082.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|302650430|gb|EFL80589.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860947|gb|EFM92953.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 445

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 140/439 (31%), Positives = 230/439 (52%), Gaps = 11/439 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F +L L+P+++ A+   GY +PT +Q +T+P  L   D+ G A TGTGKTA+F+LP +
Sbjct: 8   MTFEELDLAPQLLKALNKKGYKRPTSVQAETVPHALDGRDLLGSAPTGTGKTAAFLLPAI 67

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QVA+  + + +   L++A + GG+ ++   +  
Sbjct: 68  QHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEVF 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR++ +          +EIL+ DEADRML MGF    + I +   + + 
Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT+  EL     + + +     ++   S  E  +      +A   +    L   L
Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLK-IDAEPSRRERKKIQQWYYHADNVEHKTKLLARL 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S   M+  I+F  ++++V  L  +L K+G     + G++ Q  R + ++  K+G + ++
Sbjct: 247 ISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDGVVNVL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI DV +V NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D K +  
Sbjct: 307 VATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGK 366

Query: 360 IEKLIEK--KVDWLNGDLSSLNPPLE-------KIDIAQHNHARKNNPIPQKSTGFDRRK 410
           I++  E+  K   + G       P +       K + A+    ++      K+    R K
Sbjct: 367 IKRYTEELLKPRVIEGLEPRTKAPKDGELNTTTKKEKARIKKRKEAKKEAAKAKVKVRHK 426

Query: 411 KNYSSQKSHIPLKESEKIS 429
              +  K   P  E+ K +
Sbjct: 427 DTKNVGKRRKPASEAAKSA 445


>gi|329119861|ref|ZP_08248535.1| ATP-dependent RNA helicase RhlE [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464017|gb|EGF10328.1| ATP-dependent RNA helicase RhlE [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 444

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 147/435 (33%), Positives = 236/435 (54%), Gaps = 10/435 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L   ++ A++ AGY  PTPIQ + +P  L+  D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFSDLNLDKNILSALVSAGYETPTPIQAQAVPFALEGRDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L +   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QRLTRRSEKPGKGPRALVLTPTRELAAQVEKNALTYAKNMKWFRTVSIVGGASFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++D  + GK+    +E+L++DEADRMLDMGFI  I+ I +  P  R
Sbjct: 123 LSKPVDLIVATPGRLMDLMDSGKVDFARLEVLILDEADRMLDMGFIEDIETIVAATPEDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    +NP+ +E+       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKNPEVVEIERVDEQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRSGIAVTFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK I +K+  L   +  + P  ++          K         GFD+ KK++  ++ 
Sbjct: 360 KIEKYIGRKLPELT--VEGMEPTRKR---KAAGGKPKGRGGWGGKGGFDKDKKSFGRREG 414

Query: 419 HIPLKESEKISKLQQ 433
               +   K    ++
Sbjct: 415 GFKKEGGFKKEGFKK 429


>gi|241766307|ref|ZP_04764197.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
 gi|241363561|gb|EER58995.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
          Length = 448

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 160/432 (37%), Positives = 246/432 (56%), Gaps = 10/432 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AV + GY  PTPIQ + IP VL+ HD+   AQTGTGKTA+F LPML
Sbjct: 1   MKFEELNLAPAILKAVQETGYETPTPIQAQAIPAVLEGHDLLAGAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L +G A          R L+L PTRELAAQV ++  +YGK  ++   ++ GG+    Q
Sbjct: 61  HRLSQGTAPKNKFGGKGIRALVLTPTRELAAQVEESVREYGKYLDINSTVVFGGVGMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +++RG D+L+ TPGR+LD   +G L ++ +E+LV+DEADRMLDMGFI  ++ + +LVP
Sbjct: 121 IDRIKRGVDILVATPGRLLDLQQQGFLDLSTVEVLVLDEADRMLDMGFIHDVKKVLALVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE+++++   L+NP+ I+V   ++T + I            K+    
Sbjct: 181 KDKQSLLFSATFSDEIRELANTLLKNPQSIQVTPSNTTVQRITQVIHPVGRGKKKQV--- 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              +  Q      ++F   K    N+   L K G    A+HGN  Q +R + L+ FK G 
Sbjct: 238 LLHIIQQHNWSQVLVFTRTKFGANNVAEFLTKNGVQAMALHGNKSQSARTQALAGFKSGE 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ +VA+D+AARG+DI D+ HV N+++PN +E+Y+HRIGRTGRAG  G+A +LV  ++  
Sbjct: 298 IRALVATDIAARGIDIDDLPHVVNYEIPNVSEDYVHRIGRTGRAGASGEAVSLVCMDEEG 357

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            +  IE+  ++++    + G         E I + +          P +       K   
Sbjct: 358 FMMDIERFTKQQIPVQVIEGFGPEPGEKAEPIAMGRQTIWGGAGKPPSRDVMQAAAKAAR 417

Query: 414 SSQKSHIPLKES 425
           S     I   ++
Sbjct: 418 SEMMERIRANKA 429


>gi|253991496|ref|YP_003042852.1| ATP-dependent RNA helicase DeaD [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638374|emb|CAR66996.1| cold-shock dead box protein a (ec 3.6.1.-) (atp-dependent rna
           helicas dead) [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782946|emb|CAQ86111.1| cold-shock dead box protein A [Photorhabdus asymbiotica]
          Length = 635

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 137/379 (36%), Positives = 225/379 (59%), Gaps = 7/379 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 12  ISFADLGLSAPILSALEDLGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             +    A ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L
Sbjct: 72  HNI---NAELKAPQILVLAPTRELAVQVAEACADFSKHMRNVNVVALYGGQRYDVQLRAL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI S +P   Q
Sbjct: 129 RQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMSQIPAEHQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+ +P+ + +    +T   I   + + Y     +        
Sbjct: 189 TALFSATMPEAIRRITRRFMNDPQEVRIQASVTTRPDISQSYWSVYGMRKNEA---LVRF 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + ++
Sbjct: 246 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 306 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 365

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +E+ ++  +  +    + L
Sbjct: 366 VERTMKLTIPEVELPNAEL 384


>gi|161579561|ref|NP_931687.2| ATP-dependent RNA helicase DeaD [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 639

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 137/379 (36%), Positives = 225/379 (59%), Gaps = 7/379 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 7   ISFADLGLSAPILSALEDLGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             +    A ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L
Sbjct: 67  HNI---NAELKAPQILVLAPTRELAVQVAEACADFSKHMRNVNVVALYGGQRYDVQLRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI S +P   Q
Sbjct: 124 RQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMSQIPAEHQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+ +P+ + +    +T   I   + + Y     +        
Sbjct: 184 TALFSATMPEAIRRITRRFMNDPQEVRIQASVTTRPDISQSYWSVYGMRKNEA---LVRF 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + ++
Sbjct: 241 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 301 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 360

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +E+ ++  +  +    + L
Sbjct: 361 VERTMKLTIPEVELPNAEL 379


>gi|36787780|emb|CAE16895.1| inducible ATP-independent RNA helicase [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 644

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 137/379 (36%), Positives = 225/379 (59%), Gaps = 7/379 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 12  ISFADLGLSAPILSALEDLGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             +    A ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L
Sbjct: 72  HNI---NAELKAPQILVLAPTRELAVQVAEACADFSKHMRNVNVVALYGGQRYDVQLRAL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI S +P   Q
Sbjct: 129 RQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMSQIPAEHQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+ +P+ + +    +T   I   + + Y     +        
Sbjct: 189 TALFSATMPEAIRRITRRFMNDPQEVRIQASVTTRPDISQSYWSVYGMRKNEA---LVRF 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + ++
Sbjct: 246 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 306 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 365

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +E+ ++  +  +    + L
Sbjct: 366 VERTMKLTIPEVELPNAEL 384


>gi|240013980|ref|ZP_04720893.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI18]
 gi|240121547|ref|ZP_04734509.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID24-1]
          Length = 462

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 157/450 (34%), Positives = 231/450 (51%), Gaps = 10/450 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QRLTKRSEKPGKGPRALVLAPTRELAAQVEKNALAYAKNMRWFRTVSIVGGTSFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR+ D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    ++ + IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L++ ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DIP + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDIPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK I +K+  L  +      P  K   A      K     +KS G  RR  +   ++ 
Sbjct: 360 KIEKYINRKLPELTIE---GMEPTRKRKSASGKPKGKGGWGDRKSGG--RRGDHKPGKEG 414

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGN 448
                  E   K             GF+G 
Sbjct: 415 FGGKTRGEGFKKEGFKKDSFKKTGEGFKGK 444


>gi|255034017|ref|YP_003084638.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254946773|gb|ACT91473.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 590

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 135/370 (36%), Positives = 217/370 (58%), Gaps = 7/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL+  ++ A+ + G+ KP+PIQ + IP VLQ  DV G AQTGTGKTA+F +P+L 
Sbjct: 8   TFEELGLNENILKALQEMGFEKPSPIQAQGIPAVLQGSDVIGQAQTGTGKTAAFGIPVLE 67

Query: 62  ILEKGRARVRMPRTLILEPTRE-LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ++     V+    LIL PTRE       +          + +  + GG   + Q + L+
Sbjct: 68  RIDTSSNAVQ---ALILCPTRELAVQVSEELGRLSKFMRGVRIEAIYGGDSIDRQIRSLK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR++DH  R  L  + + ++V+DEAD MLDMGF   I++I + +P  RQT
Sbjct: 125 KGVHIVVGTPGRVMDHMERRTLKFDEVRMMVLDEADEMLDMGFREDIESILADMPEDRQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM+  +  +++ FL +P  I+V     T + IE  +     Q   +         
Sbjct: 185 ILFSATMSKPIMSITKRFLNDPTLIKVVRNELTNQNIEQVYFEVKPQAKVEVMTRL---I 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +K+ ++FCN K+ V  +   L+ +G++   IHG++ Q+ R  ++S FK G   ++V
Sbjct: 242 DMHHIKSLLVFCNTKRKVDEIVEDLQLRGYASEGIHGDLRQQQRSNVMSKFKAGVTTILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  +  V N+D+P   E Y+HRIGRTGRAG  GKAF+LVA+++   + +I
Sbjct: 302 ATDVAARGIDVSGLDGVINYDIPMDEEYYVHRIGRTGRAGMSGKAFSLVARDEKYRLKSI 361

Query: 361 EKLIEKKVDW 370
           E   + K++ 
Sbjct: 362 ESYTKVKIEK 371


>gi|148977043|ref|ZP_01813689.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3]
 gi|145963703|gb|EDK28964.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3]
          Length = 428

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 158/419 (37%), Positives = 241/419 (57%), Gaps = 13/419 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P++V A+ + GY K TPIQ K IP+  + HD+   AQTGTGKTA+F LP++
Sbjct: 1   MSFSSQGFAPELVKALTECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPVI 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +         IL PTRELAAQ+A N + Y K   L+V+ + GG    +Q ++
Sbjct: 61  QHLLNSGKKASRGTARGLILAPTRELAAQIAQNIKDYVKYTELSVSAVYGGNKMSSQVRQ 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H   G + + N+E LV DEADR+LDMGFI  ++ I   V  + 
Sbjct: 121 LELGVDILVATPGRLEEHLEAGNVSIANLEFLVFDEADRILDMGFINAVRKIMLDVETSP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L ++S + L+ PKRI V   +STA T+ H       +   +       
Sbjct: 181 QIMMFSATTSTQLNQLSVDILRKPKRISVERENSTAATVGHVVYPVDQERKTELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F N K+    +   L+  G      HG+  Q +R + L +FKEG  ++
Sbjct: 239 -IGRKNWRQVLVFVNYKETANEVVKELKLDGIKAVLCHGDKAQSARRRALDDFKEGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V +E+   + 
Sbjct: 298 MVATDVAARGLDIEDLPHVINYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVV 357

Query: 359 AIEKLIEKKVDWLN---GDLSSLNPPLEKIDIA---QHNHARKN--NPIPQKSTGFDRR 409
            +EKLI++++  +     +    +  +EK++     ++   RKN  N  PQ     +RR
Sbjct: 358 QVEKLIQQRIRRVEQPGYEPKKRDAYIEKLNTKAAYKNRQGRKNNANDAPQDQASAERR 416


>gi|284035184|ref|YP_003385114.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
 gi|283814477|gb|ADB36315.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
          Length = 643

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 141/369 (38%), Positives = 222/369 (60%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L +SP+++ AV D G++ P+PIQ + IP +L   DV G AQTGTGKTA+F +P L +
Sbjct: 33  FSSLAISPELLQAVTDMGFISPSPIQAEAIPPILDGRDVIGQAQTGTGKTAAFGIPALDL 92

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           ++     V+   TLIL PTRELA QVA+  +K  K    + +  + GG   E Q + L+ 
Sbjct: 93  IDVQDRSVQ---TLILCPTRELALQVAEEIKKLAKYKRGIRIEAIYGGDSIERQIRSLKS 149

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR++DH  R  L +NN++++++DEAD MLDMGF   I++I   +P  RQT+
Sbjct: 150 GVHIVIGTPGRVMDHMERNTLKLNNVKMMILDEADEMLDMGFREDIESILEEMPEERQTI 209

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM+  + ++++ F ++P  +          T  +     +   SK    +   L  
Sbjct: 210 LFSATMSKPIMQITQKFQKDPVLV---KVVKKELTNVNIEQVYFEVKSKAKVEVMCRLID 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +K  ++FCN K+ V  +   L+ +G+    +HG++ Q  R  ++S F+ GT  ++VA
Sbjct: 267 MYDLKLLLVFCNTKRKVDEIVEDLQIRGYQAEGLHGDLRQAQRNNVMSKFRAGTTNILVA 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  V NFD+P   E Y+HRIGRTGRAG+ G+AF+ V +++      I+
Sbjct: 327 TDVAARGIDVDDVDAVINFDIPLDEEYYVHRIGRTGRAGKSGRAFSFVGRDEKYRFREIQ 386

Query: 362 KLIEKKVDW 370
              + KV+ 
Sbjct: 387 TYTKVKVEK 395


>gi|197285752|ref|YP_002151624.1| ATP-dependent RNA helicase SrmB [Proteus mirabilis HI4320]
 gi|227356264|ref|ZP_03840653.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
 gi|194683239|emb|CAR43939.1| ATP-dependent RNA helicase [Proteus mirabilis HI4320]
 gi|227163728|gb|EEI48644.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
          Length = 451

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 138/449 (30%), Positives = 232/449 (51%), Gaps = 8/449 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F+ L L   ++ A+ + GY +PT IQ + IP  ++  D+ G A TGTGKTA+F+LP + 
Sbjct: 5   TFSSLELDESLLTALEEKGYQRPTAIQAEAIPAAMEGRDILGSAPTGTGKTAAFLLPAIQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD  ++   + +L +A + GG+ +    +   
Sbjct: 65  HLLDYPRKKSGPPRVLILTPTRELAMQVADQAKELCAHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E+L++DEADRMLDMGF   I+ I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVEMLILDEADRMLDMGFANDIETIAGETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ +    +        + +E+N   S  E  +      +A        L   L 
Sbjct: 185 LLFSATL-EGNAVIDFAQRILNEPVELNADPSRRERKKIQQFYYHADNLDHKTALLAHLL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+ +K  I+F  +++ V  L  +LEKQG     + G + Q  R + +   + G + +++
Sbjct: 244 KQEEVKKSIVFVRKRERVRELAAALEKQGIKASYLEGEMAQTQRNEAIKRVESGKMHVLI 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLD+ D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  I
Sbjct: 304 ATDVASRGLDLEDITHVFNFDLPRTADVYLHRIGRTGRAGRKGTAISLVEAHDYPLLGKI 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
            + I++ + +    ++ L P  +           K     +K+   + +K      ++  
Sbjct: 364 SRYIQEPIKY--RVVAQLRPVTKAPSQKASFKPSKKVLAKRKAKKVEEKKNVKEKVRA-- 419

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNM 449
             ++ + I K ++   +    +     ++
Sbjct: 420 --RDRKNIGKRRKTATDKTTITAEKTNHI 446


>gi|305667396|ref|YP_003863683.1| DEAD/DEAH box helicase-like protein [Maribacter sp. HTCC2170]
 gi|88709444|gb|EAR01677.1| DEAD/DEAH box helicase-like protein [Maribacter sp. HTCC2170]
          Length = 432

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 147/416 (35%), Positives = 237/416 (56%), Gaps = 9/416 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F +LG+   ++ A+   GY  PTPIQ + +P++L+  D+ G AQTGTGKTA+F +P+ 
Sbjct: 1   MTFKNLGIIEPILKALGQEGYSSPTPIQEQAVPILLKGKDLLGCAQTGTGKTAAFAIPIL 60

Query: 60  --LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             +    +   R R  + L++ PTRELA Q+ ++F  YGK   +   ++ GG+    Q +
Sbjct: 61  QQIHNDRQSNDRHRKIKALVVTPTRELAIQIGESFTAYGKFTGIRNTVIFGGVKQGKQTQ 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G D+LI TPGR+LD  N+G + + +IE  V+DEAD+MLDMGFI  I+ I + +P  
Sbjct: 121 ALKNGVDILIATPGRLLDLMNQGFISLRDIEYAVLDEADQMLDMGFIHDIRKIIAKLPPK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+L FSATM  ++  +S   L + +R+ +    +TAE +E            K  +   
Sbjct: 181 RQSLFFSATMPKDIVALSRTILGDFERVTIKPEQATAEKVEQLVYFVNKSNKVKLLVHLL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             +      + ++F   K     +   L +   +  AIHGN  Q +R K L +FK G ++
Sbjct: 241 ENRPN---SSVLVFSRTKHGANKIVKKLGQADIASAAIHGNKSQTARQKALGDFKAGELK 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARG+D+ D+  V NFD+PN  E Y+HRIGRTGRA   G A +   +++  ++
Sbjct: 298 VLIATDIAARGIDVDDLALVVNFDLPNVPETYVHRIGRTGRASASGIAISFCDRDEQPYL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
             IEKLI+++V  +       +   E ++  Q+   + N+    +S+  +RRK NY
Sbjct: 358 RDIEKLIKQQVPRMPEHPFISDDSTEVLNPKQN---KGNSGNRNRSSSQNRRKSNY 410


>gi|297538310|ref|YP_003674079.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera sp.
           301]
 gi|297257657|gb|ADI29502.1| DEAD/DEAH box helicase domain protein [Methylotenera sp. 301]
          Length = 630

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 157/449 (34%), Positives = 247/449 (55%), Gaps = 12/449 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L L   ++ A+ ++GY  PT IQ + IP+V   HD+   AQTGTGKTA+F+LP L
Sbjct: 23  LSFESLNLDNALLRAIEESGYTTPTAIQSQAIPVVTAGHDLMASAQTGTGKTAAFMLPAL 82

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L      + R PR L+L PTRELA QV +   KYGK        ++GG+P+  QNK L
Sbjct: 83  NLLATPHELKSRGPRILVLVPTRELATQVNEAARKYGKFIRARTVSIVGGMPYPLQNKLL 142

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+L+ TPGR+LDH  RG++ ++ +++L++DEADRMLDMGF+P ++ I   +   RQ
Sbjct: 143 SQPLDILVATPGRLLDHMERGRIDLSRLQMLILDEADRMLDMGFLPDVERICEQLSAERQ 202

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT+  ++ +V++  L+NPK I+V         IE           K    L + L
Sbjct: 203 TLLFSATLDGDIARVAKQILKNPKTIQVAGQKEKHANIEQRLHYVDDMTHK--NKLLEHL 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   IIF + K++   L   L   G    A+HG++ Q +R + L+  ++G ++++
Sbjct: 261 LIAPEVNQVIIFTSTKRHCDVLAEDLYAAGHKTAALHGDMTQGARNRTLTKLRQGDVKVL 320

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV N+D+P  AE+Y+HRIGRTGRAG+ G A +  +  D   +  
Sbjct: 321 VATDVAARGIDINGISHVINYDLPKFAEDYVHRIGRTGRAGKTGIAISFASNMDRHILRK 380

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE-KIDIAQHNHA-----RKNNPIPQKSTGFDRR-KKN 412
           IE+    +++   G +    P    K+D   +        R++   P    GF  R  + 
Sbjct: 381 IEQFTGNRME--PGVVEGFEPKRAMKMDGPGNGRGDRGDIRRDAHKPGGRGGFKPRDDRG 438

Query: 413 YSSQKSHIPLKESEKISKLQQDIQENDAD 441
             + ++  P  +    ++      EN  +
Sbjct: 439 GFNNRNSEPRGDRPSFNRDSSSRDENRGN 467


>gi|220927762|ref|YP_002504671.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
 gi|219998090|gb|ACL74691.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
           H10]
          Length = 542

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 148/443 (33%), Positives = 230/443 (51%), Gaps = 8/443 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+S  ++ A+ D G+  PT +Q K IP +L   D+  +++TG+GKTA F + +L 
Sbjct: 4   TFNELGISAPILKAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVSILQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +          P+ LIL P RELA QV ++  K  K        + G      + + L +
Sbjct: 64  LT---NPEEAGPQGLILTPARELAVQVDNDIRKMAKYLKHKTTAIYGQHNINLETQILNK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ DH + G L   NI  LV+DEADRMLDMGF+  +  I   +P  R TL
Sbjct: 121 GVSIVTGTPGRVFDHISHGTLSTKNIRFLVLDEADRMLDMGFLDQVVRIVKTLPKERITL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+  + + ++ NP  IE+ + + T +TI   +                 L  
Sbjct: 181 LFSATMPPEIHNICKRYMNNPVTIEIESQTKTVDTIHQVYYRVNYNEK---NTQLNRLLI 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  ++ +IFCN K  V  +   L K+G+S  A+HG+I Q  R+  +  FK+G   ++VA
Sbjct: 238 VEKPESCMIFCNTKAAVDRVQSFLGKKGYSSRALHGDIPQSKRLNTIQQFKQGKFHILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ I D+  V N+DVPN  +NY+HRIGRTGRAG  G+AF+LV  +DI  +  IE
Sbjct: 298 TDVAARGIHIEDLSLVINYDVPNDKDNYVHRIGRTGRAGHEGRAFSLVTGDDIISLYEIE 357

Query: 362 KLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           + I   +  + L  + +      E     + N  ++  P    +    ++K+   + KS+
Sbjct: 358 EHIGTLILEEELPDEEAFTKAREEAAQWIKANSLKEKAPRSASADSSVKQKRTGQNSKSN 417

Query: 420 IPLKESEKISKLQQDIQENDADS 442
                  + SK       +   S
Sbjct: 418 RIPNGRPEYSKRPDGQSRHTGKS 440


>gi|118579192|ref|YP_900442.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118501902|gb|ABK98384.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
           2379]
          Length = 447

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 162/470 (34%), Positives = 240/470 (51%), Gaps = 29/470 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF      P +   +  AGY  PTPIQ ++IP V+   DV G+AQTGTGKTA+F LP+L
Sbjct: 1   MDFQKFEFHPTIAAGISAAGYSTPTPIQKQSIPPVMAGSDVMGLAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +G  +    R LI+ PTRELA Q+  +  + G    L    + GG+    Q ++L 
Sbjct: 61  HRLMEG--KQGTVRALIIAPTRELAEQINTSIAQLGAKTGLKSMTVYGGVSVNPQIERLR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+++  PGR+LDH N+G + ++ IE+LV+DEAD+M DMGF+P I+ +   +P  RQT
Sbjct: 119 RGVDIVVACPGRLLDHINQGTIDLSRIEVLVLDEADQMFDMGFLPDIRRVLKHLPAQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D++++       +  R  +   + +         A Y         L   L 
Sbjct: 179 LLFSATMPDDIRR----LASDILRQPITVQAGSTAPPVTVSHALYPVSQHLKTPLLLELL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ +IF   K     L   LEK G+   ++ GN+ Q  R   L  F++GT Q+MV
Sbjct: 235 RHTDTESVLIFARTKHRAKRLGEQLEKAGYRATSLQGNLSQNRRQAALDGFRDGTFQIMV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+D+P+ AE YIHRIGRTGRA R G AFTLV  +D   +  I
Sbjct: 295 ATDIAARGIDVSQISHVVNYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTPDDNAMVRTI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EK               LN  LE+  + Q +++    P P K + F R  +         
Sbjct: 355 EK--------------KLNAELERRTVDQFDYSV---PAPHKDSEFARPPRPPRGGGRQA 397

Query: 421 PLKESEKISKLQQDIQENDADSLGF------RGNMPAFMLPKNRGKLNDK 464
             K + + +        ++A + G          +PA  + + +      
Sbjct: 398 SGKPATRGNTAGSGAPRDNAAAAGKPKTGKPGSAVPAQAVRRPQRSQRAH 447


>gi|240080542|ref|ZP_04725085.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA19]
 gi|240118143|ref|ZP_04732205.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
 gi|240123692|ref|ZP_04736648.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
 gi|268596673|ref|ZP_06130840.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268603859|ref|ZP_06138026.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268682325|ref|ZP_06149187.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268550461|gb|EEZ45480.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268587990|gb|EEZ52666.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268622609|gb|EEZ55009.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
          Length = 462

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 156/450 (34%), Positives = 231/450 (51%), Gaps = 10/450 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QRLTKRSEKPGKGPRALVLAPTRELAAQVEKNALAYAKNMRWFRTVSIVGGTSFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR+ D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    ++ + IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L++ ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK I +K+  L  +      P  K   A      K     +KS G  RR  +   ++ 
Sbjct: 360 KIEKYINRKLPELTIE---GMEPTRKRKSAGGKPKGKGGWGDRKSGG--RRGDHKPGKEG 414

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGN 448
                  E   K             GF+G 
Sbjct: 415 FGGKTRGEGFKKEGFKKDSFKKTGEGFKGK 444


>gi|24379088|ref|NP_721043.1| ATP-dependent RNA helicase [Streptococcus mutans UA159]
 gi|24376988|gb|AAN58349.1|AE014905_2 putative ATP-dependent RNA helicase, DEAD-box family [Streptococcus
           mutans UA159]
          Length = 517

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 146/373 (39%), Positives = 228/373 (61%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  ++ AV   G+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  NKIDVTNNVVQA---LVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N++E L++DEAD ML+MGF+  I+ I S VP TRQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T + ++  ++                  
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +G+    IHG++DQ  R+++L +FK   + ++V
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+HG++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           EKL +K++  +  
Sbjct: 355 EKLTKKRMKGMKP 367


>gi|171913474|ref|ZP_02928944.1| DEAD/DEAH box helicase-like protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 452

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 145/370 (39%), Positives = 220/370 (59%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   ++ A+ +AGY +PTPIQ   IP V+  HD+ GIAQTGTGKTA+F LPML
Sbjct: 1   MPFRALGLHENILKAIQEAGYSEPTPIQAAAIPQVVAGHDMIGIAQTGTGKTAAFTLPML 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                  G+  +R  + LIL PTREL AQ+ DN   Y K+  L VA++ GG+    Q + 
Sbjct: 61  HLLAQLHGQGPLRGIKALILAPTRELVAQIHDNVRAYAKHLPLKVAMIFGGVGERPQIEA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D++I TPGR++D   +     N++E LV+DEADRMLDMGF+P I+ I   +P  R
Sbjct: 121 LRAGTDLVIATPGRLIDLMGQRHGNFNSLEFLVLDEADRMLDMGFLPSIKRIVKALPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT++ E++ ++  FL +PK +++   S+ AE++                +    
Sbjct: 181 QTLLFSATLSKEIEALTHEFLNHPKTVQIGKRSNPAESVTQFVYEVPKHLKPALLVHLLK 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             + + +   ++F   K     +   L++ G     +H N  Q  R++ L++FK G  ++
Sbjct: 241 DPAFNMV---LVFSRMKHGADRIARHLDRYGIKTVTLHSNRTQNQRLRALADFKSGAARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + HV N+D P  AE+Y+HRIGRTGRA   G A + ++ ED   + 
Sbjct: 298 LVATDIAARGIDVDGISHVVNYDFPMHAEDYVHRIGRTGRAHAVGDAISFISPEDHGPLK 357

Query: 359 AIEKLIEKKV 368
           ++E+ I + +
Sbjct: 358 SLERFIGRGI 367


>gi|164661763|ref|XP_001732004.1| hypothetical protein MGL_1272 [Malassezia globosa CBS 7966]
 gi|159105905|gb|EDP44790.1| hypothetical protein MGL_1272 [Malassezia globosa CBS 7966]
          Length = 470

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 147/417 (35%), Positives = 224/417 (53%), Gaps = 10/417 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLG+   +  A     +  PT IQ + IP  LQ  DV G+AQTG+GKTA+F +P+L 
Sbjct: 26  SFSDLGVIEPICEACEKLHFSAPTDIQAQAIPHALQGRDVIGLAQTGSGKTAAFSIPILQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L      +      IL PTREL+ Q++   E  G    +  A ++GG+    Q+  L +
Sbjct: 86  GLWDDPRPLF---ACILAPTRELSYQISQQIEALGATIGVRCATIVGGMDMMTQSIALSK 142

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR+ DH  N     + ++  LV+DEADR+LD+ F P I  +   +P  R+T
Sbjct: 143 RPHVIVATPGRLQDHLENTKGFSLRSLRYLVMDEADRLLDLDFGPIIDKLLQNIPKERRT 202

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT ++ K+    L+NP RIE+ T  ST  T++  ++     +     +      
Sbjct: 203 MLFSATMTTKVAKLQRASLRNPVRIEIGTKYSTVSTLQQYYLFMPFAHKDTYLVHLA--- 259

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + I+F     +   L   L   GFS   +HG + Q +R+  L+ FK G   +MV
Sbjct: 260 NEQVGHSIIVFTRTVHDAQRLAVLLRLLGFSAIPLHGQLSQTARLGALNKFKAGGRSIMV 319

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARGLDIP V  V NFD+P  +++YIHR+GRT RAGR G++ TLV + D++ +  I
Sbjct: 320 CTDVAARGLDIPAVDLVVNFDIPTHSKDYIHRVGRTARAGRQGRSVTLVTQYDVELLQRI 379

Query: 361 EKLIEKKVDWLN--GDLSSLNPPLEKIDIAQHNHARKNNPIP-QKSTGFDRRKKNYS 414
           E  I K++D     GD   +    E++  AQ    R+        + G  RRK+  +
Sbjct: 380 EAAIGKRLDEFPGAGDRDMIMLLSERVGEAQRAAIRELQEKGFGNAGGAGRRKRKQA 436


>gi|255013488|ref|ZP_05285614.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_7]
          Length = 421

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 158/424 (37%), Positives = 240/424 (56%), Gaps = 8/424 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   +  A++  GY  PTPIQ + IP+V Q +D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFEDLDLIEPICKALVQEGYTTPTPIQSEAIPIVSQGYDLLGCAQTGTGKTAAFSIPII 60

Query: 61  TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L   + +      + LIL PTRELA Q+ ++F  YG+   L   ++ GG+  + Q + 
Sbjct: 61  QRLYLQKKKGYKRGIKALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG D+LI TPGR+LD   +G + ++ +E  V+DEADRMLDMGFI  I+ I  L+P  R
Sbjct: 121 LERGIDILIATPGRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+++++   L  P+++EV   SST + I+                  + 
Sbjct: 181 QSLFFSATMPPEIERLAGTILSEPQKVEVTPASSTVDAIDQSVYFVEKAEKINL---LKS 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L     +++ +IF   K     +   L K      AIHGN  Q +R + L+NFK+ T ++
Sbjct: 238 LLENPELESVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+  + HV N+++PN  E Y+HRIGRTGRAGR G AF+    E++  + 
Sbjct: 298 LIATDIAARGIDVDHLTHVINYELPNVPETYVHRIGRTGRAGREGVAFSFCDAEEVPLLK 357

Query: 359 AIEKLIEKKVDWLNG---DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            I+KLI K+V    G   +   +   + +   A    +++ N    K  G   R K  ++
Sbjct: 358 DIQKLIGKEVPIAGGHMYETKEVKAAVAEKKEAIKQESKRRNMFGSKRDGSYWRNKKRAA 417

Query: 416 QKSH 419
             S 
Sbjct: 418 NSSK 421


>gi|126274138|ref|XP_001387431.1| RNA helicase involved in maturation of 18S rRNA [Scheffersomyces
           stipitis CBS 6054]
 gi|146286171|sp|A3GFV3|FAL1_PICST RecName: Full=ATP-dependent RNA helicase FAL1
 gi|126213301|gb|EAZ63408.1| RNA helicase involved in maturation of 18S rRNA [Pichia stipitis
           CBS 6054]
          Length = 399

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 203/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P ++  +   G+  P+ IQ + I  ++   D    AQ+GTGKTA+F + ML 
Sbjct: 27  TFESMNLKPDLLKGIYGYGFEAPSAIQSRAIMQIINGRDTIAQAQSGTGKTATFSIGMLQ 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++      +  + LIL PTRELA Q+ +  +  G   N+     IGG       KKL++
Sbjct: 87  AIDTN---AKDCQALILSPTRELAVQIQNVVKHLGDYMNIHTHACIGGTHVGDDIKKLKQ 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR++D   R +L   NI++L++DEAD +   GF   I  +   +P + Q +
Sbjct: 144 GQQIVSGTPGRVVDMVKRQQLSTRNIKMLILDEADELFTKGFKEQIYEVYKYLPPSVQVV 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT++ E+ +++  F  +P +I V     T E I+   V    +  K   L       
Sbjct: 204 VVSATLSREVLEMTNKFTTDPVKILVKRDQITLEGIKQYHVQCEKEDWKFDTLCDL--YD 261

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K  V  L   + KQ F+V ++HG++ Q  R  I+++F+ G  +++++
Sbjct: 262 NLTITQAVIFCNTKLKVNWLTDQMRKQNFTVVSMHGDMKQDERDSIMNDFRTGNSRVLIS 321

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A  L+ KED+  +   E
Sbjct: 322 TDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGVAINLITKEDVATLRDFE 381

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    K+  +  +++ +
Sbjct: 382 KYYSTKIREMPMNINDI 398


>gi|91772311|ref|YP_565003.1| DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM
           6242]
 gi|91711326|gb|ABE51253.1| DEAD-box RNA helicase [Methanococcoides burtonii DSM 6242]
          Length = 463

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 156/407 (38%), Positives = 233/407 (57%), Gaps = 13/407 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   +  A+ + GY  PTPIQ  +IP +L   D+ GIAQTGTGKTA+F+LP+L
Sbjct: 1   MSFDNLNLIFPLQRALTEEGYTSPTPIQELSIPHLLDNRDMIGIAQTGTGKTAAFILPIL 60

Query: 61  TILEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +     +   + PR L+L PTRELAAQ+ ++F  YGK       ++ GG+    Q + 
Sbjct: 61  QNMSAIHKKATPKKPRVLVLAPTRELAAQIGESFATYGKYTRYKHTVVFGGVGQTPQVRA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D L+ TPGR+LD   +G + ++N+E  V+DEADRMLDMGF+  +  I  ++P  R
Sbjct: 121 LSRGVDCLVATPGRLLDLIQQGHIKLSNVEYFVLDEADRMLDMGFLNDVNKIVDMLPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM+ E+  ++   L NP ++EV   ++T E IE       +    +  L    
Sbjct: 181 QSLFFSATMSPEISTLARKMLSNPAQVEVTPQATTVERIEQFIFFVDSDNKNELLLHLLR 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +  D +   ++F   K     +   L K   +  AIHG+  Q  R K L NFK G +++
Sbjct: 241 GEHLDCV---LVFTRTKHRANKVTEMLNKSNINAGAIHGSKSQTHRTKTLQNFKSGQLRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI D+ HV N+D+PN  E+Y+HRIGRT RAG  G A++  A ++   + 
Sbjct: 298 LVATDIAARGIDIEDISHVINYDLPNIPESYVHRIGRTARAGAEGTAYSFCAADERDFLR 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            IEKL + +++    +  S     EK   A  + A+   P P++  G
Sbjct: 358 DIEKLTDMEIEVAEHNYHS-----EKAKNATGDAAK---PAPKQQRG 396


>gi|27363997|ref|NP_759525.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus CMCP6]
 gi|27360114|gb|AAO09052.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus CMCP6]
          Length = 408

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 126/371 (33%), Positives = 204/371 (54%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L P ++ A+ + GY +PT IQ + IP  L+  D+   A TGTGKTA+FVLP L 
Sbjct: 4   TFADLDLDPNLLAAIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    R   P  + IL PTRELA QVAD      KN +L +  + GG+ ++     L 
Sbjct: 64  YLQDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTSLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR++++    +     IE L++DEADRMLDMGF P +  +++   + +QT
Sbjct: 124 TTQDIVVATPGRLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT     ++  + + L +P  I+        + I   +        K         
Sbjct: 184 MLFSATLEGKGVEGFTADLLNDPADIDAEPSRRERKKITQWYYRADNMEHKLA---LLKD 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F   ++ + +L   LE +  +   I G + Q  R   ++ F++G++ ++
Sbjct: 241 IINNQAERTIVFLKTRERLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV NFD+P  A+ Y+HRIGRT RAG+ G A ++V   D   +D 
Sbjct: 301 LATDVAARGIDLPDVSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR 360

Query: 360 IEKLIEKKVDW 370
           + + +++ +  
Sbjct: 361 VARYVKEDIKE 371


>gi|119504065|ref|ZP_01626146.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2080]
 gi|119460068|gb|EAW41162.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2080]
          Length = 437

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 154/367 (41%), Positives = 227/367 (61%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ AV D GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSTLGLSESLLKAVADEGYTTPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L KG+  +    R L+L PTRELAAQVA++ + YGK  NL  A++ GG+    Q  +L
Sbjct: 61  HGLSKGQPAKANQVRALVLTPTRELAAQVAESVDIYGKYLNLRSAVVFGGVKINPQMMRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+LI TPGR+LD + +  +    +E+L++DEADRMLDMGFI  I+ I   +P  RQ
Sbjct: 121 RKGVDILIATPGRLLDLYQQNAMSFQKLEVLILDEADRMLDMGFIHDIRRIMKALPNKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +++++ +++  + NP  I V   +STA ++            +   +     
Sbjct: 181 NLMFSATFSEDIRDLAKTIVNNPVEISVTPRNSTAVSVTQWIHPVDKNQKRHLLVEL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q   +  ++F   K+    L   L+K+G    AIHGN  Q +R + LS FK G ++++
Sbjct: 238 INQHNWEQVLVFSRTKRGANRLAEFLDKKGIQAAAIHGNKSQGARTRALSEFKSGKLRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N D+P  A++Y+HRIGRTGRAG  G+A +LV+ ++ + +  
Sbjct: 298 VATDIAARGLDIEQLPQVVNLDLPEVAQDYVHRIGRTGRAGATGQAISLVSADEAQLLQD 357

Query: 360 IEKLIEK 366
           IE+LI+ 
Sbjct: 358 IERLIQT 364


>gi|290580897|ref|YP_003485289.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025]
 gi|254997796|dbj|BAH88397.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025]
          Length = 517

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 146/373 (39%), Positives = 228/373 (61%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  ++ AV   G+V+P+PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  NKIDVINNVVQA---LVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N++E L++DEAD ML+MGF+  I+ I S VP TRQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T + ++  ++                  
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIVAKELTTDLVDQYYIRVKENEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +G+    IHG++DQ  R+++L +FK   + ++V
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+HG++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           EKL +K++  +  
Sbjct: 355 EKLTKKRMKGMKP 367


>gi|161486658|ref|NP_933453.2| ATP-dependent RNA helicase SrmB [Vibrio vulnificus YJ016]
          Length = 408

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 126/371 (33%), Positives = 205/371 (55%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L P ++ A+ + GY +PT IQ + IP  L+  D+   A TGTGKTA+FVLP L 
Sbjct: 4   TFADLDLDPNLLSAIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    R   P  + IL PTRELA QVAD      KN +L +  + GG+ ++     L 
Sbjct: 64  YLQDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTSLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR++++    +     IE L++DEADRMLDMGF P +  +++   + +QT
Sbjct: 124 TTQDIVVATPGRLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT     ++  + + L +P  I+        + I   +    +   K         
Sbjct: 184 MLFSATLEGKGVEGFTADLLNDPADIDAEPSRRERKKITQWYYRADSMEHKLA---LLKD 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F   ++ + +L   LE +  +   I G + Q  R   ++ F++G++ ++
Sbjct: 241 IINNQAERTIVFLKTRERLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV NFD+P  A+ Y+HRIGRT RAG+ G A ++V   D   +D 
Sbjct: 301 LATDVAARGIDLPDVSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR 360

Query: 360 IEKLIEKKVDW 370
           + + +++ +  
Sbjct: 361 VARYVKEDIKE 371


>gi|37197585|dbj|BAC93424.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 441

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 126/371 (33%), Positives = 205/371 (55%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L P ++ A+ + GY +PT IQ + IP  L+  D+   A TGTGKTA+FVLP L 
Sbjct: 37  TFADLDLDPNLLSAIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLPALQ 96

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    R   P  + IL PTRELA QVAD      KN +L +  + GG+ ++     L 
Sbjct: 97  YLQDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTSLNIFTITGGVQYQEHADILA 156

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR++++    +     IE L++DEADRMLDMGF P +  +++   + +QT
Sbjct: 157 TTQDIVVATPGRLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQT 216

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT     ++  + + L +P  I+        + I   +    +   K         
Sbjct: 217 MLFSATLEGKGVEGFTADLLNDPADIDAEPSRRERKKITQWYYRADSMEHKLA---LLKD 273

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F   ++ + +L   LE +  +   I G + Q  R   ++ F++G++ ++
Sbjct: 274 IINNQAERTIVFLKTRERLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV NFD+P  A+ Y+HRIGRT RAG+ G A ++V   D   +D 
Sbjct: 334 LATDVAARGIDLPDVSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR 393

Query: 360 IEKLIEKKVDW 370
           + + +++ +  
Sbjct: 394 VARYVKEDIKE 404


>gi|255945213|ref|XP_002563374.1| Pc20g08510 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588109|emb|CAP86180.1| Pc20g08510 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 525

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 126/405 (31%), Positives = 198/405 (48%), Gaps = 10/405 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 46  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 105

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     + +    LIL PTRELA Q +   +  GK+  + V +  GG        +L 
Sbjct: 106 ERINPKSTKTQA---LILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRLN 162

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 163 DPVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLMSFHPKDRQV 222

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F     R           T+            K+       L 
Sbjct: 223 MLFSATFPLIVKS----FKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 278

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q+ R ++  +F+ G  + +V
Sbjct: 279 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLV 338

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 339 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYKI 398

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           E+ +  ++  +     +++  L   D  ++     +NP PQ   G
Sbjct: 399 EQELGTEIQPIP---QNIDKKLYVYDSPENIPRPISNPPPQTGAG 440


>gi|261345155|ref|ZP_05972799.1| ATP-dependent RNA helicase DeaD [Providencia rustigianii DSM 4541]
 gi|282566845|gb|EFB72380.1| ATP-dependent RNA helicase DeaD [Providencia rustigianii DSM 4541]
          Length = 660

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 141/391 (36%), Positives = 230/391 (58%), Gaps = 7/391 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS  ++ A+ D GY KP+PIQ + IPL+L  +DV G+AQTG+GKTA+F LP+L
Sbjct: 7   MSFADLGLSASILNALSDLGYEKPSPIQQQCIPLLLNGNDVLGMAQTGSGKTAAFGLPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++     ++ P+ L+L PTRELA QVA+    + K+ N    + +  G  ++ Q + L
Sbjct: 67  HNIDP---DLKAPQILVLAPTRELAVQVAEALSDFSKHMNRVNVVALYGGQRYDVQLRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  V++ TPGR+LDH  RG L ++ ++ LV+DEAD ML MGFI  ++NI S +P   Q
Sbjct: 124 RQGPQVVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIDDVENIMSQIPAQHQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+++PK I + +  +T   I   +         +        
Sbjct: 184 TALFSATMPEPIRRITRRFMKDPKEIRIQSSITTRPDIAQSYWTVSGMRKNEA---LVRF 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K G + ++
Sbjct: 241 LESEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKNGRLDIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 301 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           +E+ ++  +  ++   + L     +   A  
Sbjct: 361 VERTMKLTIPEVDLPNAELLSQRRQAQFAAK 391


>gi|255691877|ref|ZP_05415552.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides
           finegoldii DSM 17565]
 gi|260622430|gb|EEX45301.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides
           finegoldii DSM 17565]
          Length = 421

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 139/417 (33%), Positives = 229/417 (54%), Gaps = 18/417 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ + IP++L+  D+  +AQTGTGKTA+F+LP+L
Sbjct: 1   MKFSELQLNANVLEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
             L +G         +I+ PTRELA Q+    E +     ++   + GG     FE Q K
Sbjct: 61  NKLSEGNHPEDAINCIIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYDDIMQIVKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++   L NP  I++       +       A Y  Y  +   + +
Sbjct: 181 RQTVMFSATMPAKIQQLANTILNNPSEIKLAVSKPAEKI----IQAAYVCYENQKLGIIR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L + +  +  IIF + K  V  +  +L     +V  +H +++Q  R  ++  FK G + 
Sbjct: 237 SLFADEVPERVIIFASSKIKVKEVAKALMAMKLNVGEMHSDLEQAQRETVMHEFKAGRVN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V NFDVP+ +E+Y+HRIGRT RA   G A T V++++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFVSEKEQSNF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
            +IE  +EK       D+  +  P E  +  ++    K     +   G + +++N+ 
Sbjct: 357 KSIENFLEK-------DIYKIPIPAELGEAPEY----KPRSFSKSRYGSNPKRRNFR 402


>gi|24375521|ref|NP_719564.1| ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1]
 gi|24350394|gb|AAN57008.1|AE015835_4 ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1]
          Length = 623

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 139/372 (37%), Positives = 215/372 (57%), Gaps = 8/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ A+ + GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L 
Sbjct: 7   TFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            +         P+ L+L PTRELA QVA+ F  Y K       L I  G   + Q   L+
Sbjct: 67  KVTSQ----TTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG L +  ++ LV+DEAD ML MGFI  I+ I    P  RQ 
Sbjct: 123 RGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPPQRQL 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +++++V+   L+N   I +    +T ++IE  FV        +  +    ++
Sbjct: 183 ALFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVE 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + +   IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++
Sbjct: 243 NTEGI---IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +GHV N+D+P   E Y+HRIGRTGRAGR G A   V   +++ +  I
Sbjct: 300 ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTI 359

Query: 361 EKLIEKKVDWLN 372
           E+    ++  + 
Sbjct: 360 ERATNSRISPMK 371


>gi|315505697|ref|YP_004084584.1| dead/deah box helicase domain protein [Micromonospora sp. L5]
 gi|315412316|gb|ADU10433.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5]
          Length = 585

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 144/366 (39%), Positives = 211/366 (57%), Gaps = 1/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL  +++ A+   GY +PTPIQ + IP +L   D+ G A TGTGKTA+F LP+L  
Sbjct: 22  FADLGLRTELLGALSALGYEEPTPIQREAIPPLLAGQDLLGQAATGTGKTAAFALPLLQR 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +  GRA    P +L+L PTRELA QV++ F +YGK+    V  + GG P   Q + L+ G
Sbjct: 82  MPVGRAEGD-PVSLVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALDHG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR LDH  RG L +  +  +V+DEAD MLDMGF   I+ I    P  RQT+L
Sbjct: 141 VDVVVATPGRALDHIARGTLRLGALSTVVLDEADEMLDMGFAEDIEAILEHAPAGRQTVL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +  ++   L +P RI +      A        + Y             +   
Sbjct: 201 FSATMPARIDGLARQHLTDPVRIRIERERPVAGEAPRVRQSAYIVARAHKPAALGRVLDV 260

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           ++    I+FC  ++ V  L  ++  +G+   A+HG + Q  R +++   + GT  L+VA+
Sbjct: 261 ESPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVAT 320

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  + HV N+DVP+  E+Y+HRIGR GRAGR G A TL    + + +  IE+
Sbjct: 321 DVAARGLDVEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIER 380

Query: 363 LIEKKV 368
           +  +++
Sbjct: 381 VTGQRI 386


>gi|261210411|ref|ZP_05924705.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC341]
 gi|260840469|gb|EEX67035.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC341]
          Length = 436

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 138/429 (32%), Positives = 214/429 (49%), Gaps = 7/429 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD GL P+V+  +   G+V  TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                          PR +I+ PTRELA Q+ ++ E    +  L  AL  GG  ++ Q  
Sbjct: 70  HLLTTPAAEGRTDTQPRAIIMAPTRELAIQIYNDAEPLLASTGLKAALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G D+LI T GRI+D + +    +N I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLQSGVDILIGTTGRIIDFYKQRVFSLNYIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +  L    + T   +     F       E        +T        +   ++    L Q
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMNN-PEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     L   L      V  + G++ Q+ R +IL  F +G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEQLWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPL-EKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            AIE  IE  +   + D S+L   L   + +      R+ N    ++ G +R+ +     
Sbjct: 369 PAIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNNGGNRKPQQRRP- 427

Query: 417 KSHIPLKES 425
           ++  P K++
Sbjct: 428 RAPRPKKDA 436


>gi|74317751|ref|YP_315491.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
 gi|74057246|gb|AAZ97686.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 477

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 164/410 (40%), Positives = 240/410 (58%), Gaps = 12/410 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L L+  ++ A+ DAGY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L 
Sbjct: 6   TFASLALAEPILRAIADAGYTAPTPIQAQAIPHVLAGGDLLAAAQTGTGKTAGFTLPILH 65

Query: 62  ILEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L        +   PR LIL PTRELAAQV ++ + YGK  +LT  ++ GG+    Q K 
Sbjct: 66  QLSTRAAVAPKPGRPRCLILVPTRELAAQVEESVKTYGKYLSLTSMVMFGGVNINPQFKA 125

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+   D+L+ TPGR+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ + +++P  R
Sbjct: 126 LKARVDILVATPGRLLDHVAQKTVDLSGVEILVLDEADRMLDMGFIRDIRRVLAVLPKQR 185

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +DE++ ++   L NPK +EV   ++TAE +E         + +        
Sbjct: 186 QNLLFSATFSDEIRTLANGLLNNPKSVEVARRNTTAEVVEQSMHRVPQAHKRDL---LAH 242

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L      +  ++F   K     L   L K G +  AIHGN  Q +R K L++FK+G+++ 
Sbjct: 243 LIKHHDWQQVLVFTRTKHGANKLAEKLNKDGITAAAIHGNKSQSARTKALASFKDGSVRA 302

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV  E++ ++ 
Sbjct: 303 LVATDIAARGIDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGSALSLVDDEEMGYLR 362

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
            IEKLI++ +  +  +   + P    +       + +  P P +  G  R
Sbjct: 363 DIEKLIKRAIVRVEIEPGFVPPAKADL------MSDERPPRPPQGRGASR 406


>gi|156084974|ref|XP_001609970.1| p68-like protein [Babesia bovis]
 gi|154797222|gb|EDO06402.1| p68-like protein [Babesia bovis]
          Length = 529

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 125/380 (32%), Positives = 201/380 (52%), Gaps = 2/380 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F        ++ A+  AG+  PTPIQ++  P+ L   DV GIA+TG+GKT +F+LP +
Sbjct: 108 VSFEHTSFPDYILKAIRAAGFTAPTPIQVQGWPIALSGRDVIGIAETGSGKTLAFLLPAV 167

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +           P  L+L PTREL  Q+     ++G +  +  ++  GG+P   Q  +
Sbjct: 168 VHINAQHLLRPGDGPIVLVLAPTRELVEQIRQQCVQFGASSRIKSSVAYGGVPKRQQMYE 227

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RG ++L+  PGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   R
Sbjct: 228 LKRGVEILLACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDR 287

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+Q ++ +  +                          +  +K + L+++
Sbjct: 288 QTLMWSATWPREVQSLAHDLCREEPVHINVGSLDLKTCHNVSQEVFVIEEHEKRSQLKKI 347

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L         +IF + KK   ++   L   G+   +IHG+  Q  R  +L+ FK G   +
Sbjct: 348 LGQIGQGTKILIFTDTKKTADSITKELRLDGWPALSIHGDKKQEERNWVLNEFKSGKHPI 407

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RGLD+ DV  V NFD PN+ E+Y+HRIGRTGR G  G ++T +  +  +   
Sbjct: 408 MVATDVASRGLDVRDVKVVINFDFPNQIEDYVHRIGRTGRGGNKGASYTFLTPDKNRVAR 467

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + KL+ +    ++ +LS L
Sbjct: 468 ELVKLMREAKQQISPELSKL 487


>gi|91225696|ref|ZP_01260725.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 12G01]
 gi|269966740|ref|ZP_06180817.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 40B]
 gi|91189585|gb|EAS75860.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 12G01]
 gi|269828663|gb|EEZ82920.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 40B]
          Length = 643

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 155/463 (33%), Positives = 243/463 (52%), Gaps = 35/463 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+   G+V PTPIQ   IP +L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             L+  + +   P+ ++L PTRELA QVA   +  GKN      L I G      Q + L
Sbjct: 66  NKLDLNQRK---PQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA V++ TPGR+ D  NR +L ++ +   V+DEAD ML+MGF+  +  I    P + Q
Sbjct: 123 KSGAHVVVGTPGRVQDLINRERLHLDEVSTFVLDEADEMLNMGFVDDVTAIMEHAPESAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   L+K+ E FL++P  ++V   + T + ++  F         +        
Sbjct: 183 RVLFSATMPPMLKKIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLET 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D     I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 243 EETD---ASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE++ +  ++ +   L           +A+   A+    +               ++K H
Sbjct: 360 IERVTKSSMEEIQLPLRD--------QVAEARLAKLGAELE--------------AEKEH 397

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
             L +  ++ +  Q   + D  +L       A +L + +GK  
Sbjct: 398 KALDKFAELVEKLQTSLDIDPATLA------AMLLKRQQGKRP 434


>gi|17546930|ref|NP_520332.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
 gi|17429230|emb|CAD15918.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
           GMI1000]
          Length = 495

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 163/418 (38%), Positives = 243/418 (58%), Gaps = 8/418 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F   GL P ++ A+ ++GY + TPIQ   IP+V+   DV G AQTGTGKTA F LP++
Sbjct: 15  VTFDTFGLHPDILRALAESGYTRATPIQAAAIPVVIAGRDVMGAAQTGTGKTAGFSLPII 74

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L         P        IL PTRELA QV DN  KY K+  L  A++ GG+    Q
Sbjct: 75  QNLLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKHTALRSAVVFGGVDMNPQ 134

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L RG +VL+ TPGR+LDH  +  + ++ + +LV+DEADRMLDMGF+P +Q I +L+P
Sbjct: 135 TEQLRRGVEVLVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLP 194

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCAL 234
             RQTLLFSAT + E++K++ ++L++P+ IEV   ++TA+ +          + +     
Sbjct: 195 AHRQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVH 254

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L +    Q      I+F N K     L  +LE++  +  AIHG+  Q  RM+ L  FK+G
Sbjct: 255 LLRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQTERMQTLEAFKQG 314

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           T+ ++VA+D+AARGLDI  +  V NFD+P  AE+Y+HRIGRTGRAG  G A +L A  D 
Sbjct: 315 TVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDE 374

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           + +  IEKLI++ +      L+  +P  E+    +     +     +     +R ++N
Sbjct: 375 RLLADIEKLIKRNLPR--ETLTDFDPTGEQARERERRERDERRNRTEIRRARERDERN 430


>gi|330804914|ref|XP_003290434.1| hypothetical protein DICPUDRAFT_37328 [Dictyostelium purpureum]
 gi|325079445|gb|EGC33045.1| hypothetical protein DICPUDRAFT_37328 [Dictyostelium purpureum]
          Length = 600

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 139/430 (32%), Positives = 222/430 (51%), Gaps = 11/430 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL+ K+   +    Y KPTPIQ +TIP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 28  SWSQAGLTEKIHLMLKKFQYEKPTPIQSQTIPAIMSGRDLIGIARTGSGKTLAFLLPMFR 87

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      V     +  I+ PTRELA Q+    +K+ KN  L VA + GG     Q   L
Sbjct: 88  HILAQPKTVPGDGMIGLIMSPTRELALQIFSECKKFTKNLGLRVACIYGGASISEQIADL 147

Query: 120 ERGADVLICTPGRIL---DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGAD+++CTPGR++      NR    +  +  LV+DEADRM DMGF P I  +   +  
Sbjct: 148 KRGADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQIMCVIDNIRP 207

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++  ++  L  P  I     S  +  I+            +   L 
Sbjct: 208 DRQTIMFSATFPPKVENAAKKILTKPLEIIAGGRSIVSSDIDQHV--EVRPSETRFRRLI 265

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL         +IF N+++   NL   L    +   ++HG+ DQ  R + +++FK    
Sbjct: 266 ELLSLWYHKGQILIFTNRQETTDNLFRQLASSQYQCLSLHGSKDQTDRDETITDFKNKVK 325

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+ LA+RGLDI D+  V NFD P+  E+Y+HR+GRTGRAG  G A+T +  E+ ++
Sbjct: 326 TILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNKGTAYTFITPEEERY 385

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
             +I K +E+    +  +L  LN   ++    +    ++    P   TG   +       
Sbjct: 386 SPSIIKALEQSGSKVPDELKKLNESYDR----KRKEGKEVLLAPTGFTGRGHKFDAAEEN 441

Query: 417 KSHIPLKESE 426
           K +I  K+ +
Sbjct: 442 KKNIERKQQK 451


>gi|224825987|ref|ZP_03699090.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224601624|gb|EEG07804.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 562

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 161/388 (41%), Positives = 227/388 (58%), Gaps = 6/388 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGLS  ++ AV + GY  PTPIQ + IP V++  D+   AQTGTGKTA F LP+L
Sbjct: 4   IKFTDLGLSEPLLRAVAETGYTTPTPIQAQAIPQVIKGGDLLAAAQTGTGKTAGFTLPLL 63

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                        PR L+L PTRELAAQV ++   YGK       ++ GG+    Q   L
Sbjct: 64  HRLGPAPTHLKGRPRALVLTPTRELAAQVEESVRTYGKYLPHKSMVMFGGVGINPQIAAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+L+ TPGR+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ + +L+P  RQ
Sbjct: 124 RKPLDILVATPGRLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIHDIKKVLALLPAKRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ +++  L NP+ +EV   ++  E +E            +        
Sbjct: 184 NLLFSATFSDEIKVLADRLLNNPQLVEVARRNTANELVEQKVHLVDRDKKTELLTHL--- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            SQ      ++F   K     L   L+K G +  AIHGN  Q +R K L++FK  T+Q++
Sbjct: 241 ISQGDWHQVLVFTRTKHGANRLAEKLDKSGITAAAIHGNKSQNARTKALADFKANTLQVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAG  G+A +LV  ++ K +  
Sbjct: 301 VATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGNEGEAVSLVCVDEFKFLKD 360

Query: 360 IEKLIEKKVDWL--NGDLSSLNPPLEKI 385
           IEKLI+K +      G  + L    E I
Sbjct: 361 IEKLIKKDIPQFTVPGYEADLTVTPEPI 388


>gi|325188272|emb|CCA22812.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 470

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+ KP+ IQ + +  +L  HD    AQ+GTGKTA+F + +L 
Sbjct: 98  TFDAMELREDLLRGIYAYGFEKPSAIQQRAVKPILLGHDCIAQAQSGTGKTATFTVSILQ 157

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +    LIL PTRELA Q+       G   ++ V   +GG         L++
Sbjct: 158 KININLKETQA---LILAPTRELAQQIVKVIAAIGDYMSINVHACVGGTAVRDDIHTLQQ 214

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D  N+G L    +++ V+DEAD ML  GF   I ++   +P + Q  
Sbjct: 215 GVHIVVGTPGRVGDMINQGALRTEAVKMFVLDEADEMLSRGFQDQIYDVFRFLPESVQVA 274

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+ +V++ F+++P RI V     T E I+  FVA   +  K   L       
Sbjct: 275 LFSATMPQEVLEVTQKFMRDPIRIMVKRDELTLEGIKQFFVAIEREEWKFDTLCDL--YE 332

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   II+CN ++ V  L   ++ + F+V A+HG++DQR R  I+  F+ G+ ++++ 
Sbjct: 333 TLTITQAIIYCNTRRKVDWLTEKMQSKDFTVSAMHGDMDQRQRDIIMREFRSGSSRVLIT 392

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   + + D++++  IE
Sbjct: 393 TDLLARGIDVQQVSLVVNYDLPLNRENYIHRIGRSGRFGRKGVAINFLTECDVRYLKDIE 452

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    +++ +  +++ L
Sbjct: 453 KFYNTQIEEMPMNVADL 469


>gi|251793531|ref|YP_003008260.1| ATP-dependent RNA helicase SrmB [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534927|gb|ACS98173.1| ATP-dependent RNA helicase SrmB [Aggregatibacter aphrophilus
           NJ8700]
          Length = 441

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 134/433 (30%), Positives = 226/433 (52%), Gaps = 7/433 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            FAD  L+P+++ A+   GY +PT IQ +T+P  +   DV G A TGTGKTA+F+LP + 
Sbjct: 6   QFADFDLAPELLKAIQKKGYQRPTAIQQETLPAAMDGEDVLGSAPTGTGKTAAFLLPAIQ 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVA+  E+      L++A + GG+ ++   +   
Sbjct: 66  HLLDYPRRKPGAPRVLILTPTRELAMQVAEQAEELACFTKLSIATITGGVAYQNHGEIFN 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR+L +          +EIL+ DEADRML MGF    + I++   + +QT
Sbjct: 126 KNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKISAETRWRKQT 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  +L +       N     ++   S  E  +      +A  ++    L     
Sbjct: 186 LLFSATLEGDLLEDFAERTLNEPVK-IDAEPSRRERKKIQQWYYHADSNEHKFKLLARFI 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+ +  GI+F  ++++V  L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 245 EQEQVSKGIVFVRRREDVRELAENLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGVVTVLV 304

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D++ARG+DI DV H+ NFD+P  A+ Y+HRIGRT RAG+ G A + V   D + +  I
Sbjct: 305 STDVSARGIDIDDVSHIMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYRLLGKI 364

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           ++  +   + L   +     P  K    +    +  +   +      R  +  + +K+  
Sbjct: 365 KRYTQ---EILKARVIEGLEPRTK--APKDGEIKTVSKKQKAKKLEKREAQKKTDKKAKQ 419

Query: 421 PLKESEKISKLQQ 433
             ++ + I K ++
Sbjct: 420 RHQDRKNIGKRRK 432


>gi|303271803|ref|XP_003055263.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463237|gb|EEH60515.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 394

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 200/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G+   ++  +   G+ KP+ IQ + +  +    DV   AQ+GTGK++   L +  
Sbjct: 22  TFDAMGIREDLLRGLYSYGFEKPSAIQQRAVMPICSGRDVIAQAQSGTGKSSMISLALCQ 81

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+     V+    L+L PTRELA Q        G   ++ V   IGG       +KL+ 
Sbjct: 82  MLDTSTREVQA---LVLSPTRELATQTEKVALALGNFMSVQVHACIGGRSIGEDIRKLDH 138

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L   NI+ L++DEAD ML+ GF   I ++   +P   Q +
Sbjct: 139 GVHIVSGTPGRVFDMIKRRNLRTRNIKTLILDEADEMLNKGFKEQIYDVYRYLPPETQVV 198

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 199 LVSATLPVEVLEMTTKFMTDPIRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL--YD 256

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   +    F+V A+HG++ Q+ R  I+  F+ GT ++++ 
Sbjct: 257 TLTITQAVIFCNTKRKVDWLTEKMRANNFTVSAMHGDMPQKERDAIMGEFRGGTTRVLIT 316

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  ENYIHRIGR+GR GR G A   V  +D++ +  IE
Sbjct: 317 TDVWARGIDVQQVSLVINYDLPNNRENYIHRIGRSGRYGRKGVAINFVKADDVRILRDIE 376

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 377 QYYSTQIDEMPMNVADL 393


>gi|206970279|ref|ZP_03231232.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|206734856|gb|EDZ52025.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
          Length = 481

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 142/409 (34%), Positives = 236/409 (57%), Gaps = 10/409 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  LS ++V A+   GY  PT +Q + IP+ L++ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFSDYKLSTEIVRALTGLGYNHPTEVQGEVIPVALEKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++K+S  ++ +P  IE+     T + IEH     +     +   L + + +
Sbjct: 182 LFSATLPEDVEKLSRTYMNSPIHIEIKAAGITTDKIEH---TLFEVIEDEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           + I  ++    G  S      EK    +  HA+   PI +K    D  K
Sbjct: 359 EYIGFEIPKAIGP-SKEEVMKEKAAFEEKIHAK---PIIKKDKNADINK 403


>gi|145636310|ref|ZP_01791979.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
 gi|145270475|gb|EDK10409.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
          Length = 439

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 143/440 (32%), Positives = 226/440 (51%), Gaps = 9/440 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP + 
Sbjct: 5   QFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R ++  PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++       
Sbjct: 65  HLLDYPRRKLGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QT
Sbjct: 125 TNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL       L N     V+   S  E  +      +A  ++    L     
Sbjct: 185 LLFSATLEGELLVDFAERLLNDPVK-VDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +  GI+F  ++++   L   L K+G     + G + Q  R   +   K G + ++V
Sbjct: 244 ETEEVTRGIVFVRRREDARELSEILRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           ++  E+  K   L G      PP  K    +    ++   I +K     + +     +  
Sbjct: 364 KRYTEEILKARILEGLEPRTKPP--KDGEVKSVSKKQKARIKEKREDKKKTEAKKKVKLR 421

Query: 419 HIPLKESEKISKLQQDIQEN 438
           H   K+++ I K ++    N
Sbjct: 422 H---KDTKNIGKRRKPSNSN 438


>gi|40063513|gb|AAR38313.1| ATP-dependent RNA helicase RhlE [uncultured marine bacterium 581]
          Length = 446

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 154/367 (41%), Positives = 227/367 (61%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ AV D GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSTLGLSESLLKAVADEGYTTPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L KG++ +    R L+L PTRELAAQVA++ + YGK  NL  A++ GG+    Q  +L
Sbjct: 61  HGLSKGQSAKANQVRALVLTPTRELAAQVAESVDIYGKYLNLRSAVVFGGVKINPQMMRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+LI TPGR+LD + +  +    +E+L++DEADRMLDMGFI  I+ I   +P  RQ
Sbjct: 121 RKGVDILIATPGRLLDLYQQNAMSFQKLEVLILDEADRMLDMGFIHDIRRIMKALPNKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +++++ +++  + NP  I V   +STA ++            +   +     
Sbjct: 181 NLMFSATFSEDIRDLAKTIVNNPVEISVTPRNSTAVSVTQWIHPVDKNQKRHLLVEL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q   +  ++F   K+    L   LEK+     AIHGN  Q +R + LS FK G ++++
Sbjct: 238 INQHNWEQVLVFSRTKRGANRLAEFLEKKDIQAAAIHGNKSQGARTRALSEFKSGKLRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N D+P  A++Y+HRIGRTGRAG  G+A +LV+ ++ + +  
Sbjct: 298 VATDIAARGLDIEQLPQVVNLDLPEVAQDYVHRIGRTGRAGATGQAISLVSADEAQLLQD 357

Query: 360 IEKLIEK 366
           IE+LI+ 
Sbjct: 358 IERLIQT 364


>gi|317052319|ref|YP_004113435.1| DEAD/DEAH box helicase domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316947403|gb|ADU66879.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum
           S5]
          Length = 457

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 176/462 (38%), Positives = 267/462 (57%), Gaps = 21/462 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGLS  ++ AV   GY +PTP+Q + IP +LQ  D+   AQTGTGKTA F LPML
Sbjct: 1   MLFSDLGLSAPILRAVAAEGYTQPTPVQQQAIPAILQGRDIQAGAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ILE+   R R      IL PTRELAAQV ++   YGK+ +L  A++ GG+    Q   L
Sbjct: 61  EILERQAIRGRRHVRALILTPTRELAAQVEESVRTYGKHLSLKSAVIFGGVAMGPQLANL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+++ TPGR+LDH  +  + ++ +E LV+DEADRMLDMGFI  I+ + +L+P  RQ
Sbjct: 121 RRGVDIVVATPGRLLDHVQQKSIDLSKVEFLVLDEADRMLDMGFIHDIRKVLALLPKERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E+ +++ +F+++P ++EV   ++ AET++        +  ++        
Sbjct: 181 NLLFSATFSREITELASSFMKDPVQVEVARRNTAAETVDQVVHLVDRERKRELLSKL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+   +  ++F   K     L   LEK G    AIHGN  Q +R K L++FK+G ++++
Sbjct: 238 ISEGKWQQVLVFTRTKHGANRLAQQLEKDGIHSAAIHGNKSQSARTKALADFKKGQVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++ HV NF++PN  E+Y+HRIGRTGRAG  GKA +LV  ++ + +  
Sbjct: 298 VATDIAARGLDIDELPHVVNFELPNVPEDYVHRIGRTGRAGNCGKACSLVCVDEKQLLKG 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNH------------ARKNNPIPQKSTG 405
           IE L+++ +  + + G     + P E I   ++N             A+     P  STG
Sbjct: 358 IEGLLKRDIPQEHIKGFEPDPSIPAEPIQNGRNNRQGQGRARSGAQPAKSARAFPSTSTG 417

Query: 406 FDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
              R K+  S+ +       +++ K Q   ++       FR 
Sbjct: 418 A--RPKSAGSRPARQGASAGKQV-KFQGASRDGKPRVFDFRS 456


>gi|284037338|ref|YP_003387268.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
 gi|283816631|gb|ADB38469.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
          Length = 485

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 151/376 (40%), Positives = 231/376 (61%), Gaps = 7/376 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L   ++ A+ + GY  PTPIQ K IP++L R D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MQFSELSLIDPILKALTEEGYTNPTPIQEKAIPILLSRRDLLGCAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGRARVRMPRTLIL----EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +L + R++       I      PTRELA Q+A++F  YG++ N+   ++ GG+   +Q 
Sbjct: 61  QLLSEERSKSTGGPRRIKTLILTPTRELAIQIAESFTAYGRHLNIRNTVIFGGVSQHSQV 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+ G DVLI TPGR+LD  N+G + + +++  V+DEADRMLDMGFI  ++ + + +P 
Sbjct: 121 NTLKAGVDVLIATPGRLLDLMNQGFISLRDVQFFVLDEADRMLDMGFIHDVKKVITKLPT 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ+L FSATM  ++ K+++  L NP ++EV   SSTA+TIE        +  +K     
Sbjct: 181 HRQSLFFSATMPPDVAKLADTILNNPAKVEVTPVSSTADTIEQAMYFVGKEDKRKL---L 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             +     +K+ ++F   K     +   L K G    AIHGN  Q +R + LSNFK    
Sbjct: 238 VHILDDKNIKSALVFARTKHGADKVVKDLLKAGIGAEAIHGNKSQNARQRALSNFKSRET 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARG+D+ ++ HV N+++PN  E Y+HRIGRTGRAG  G A +    E+ ++
Sbjct: 298 RVLVATDIAARGIDVDELSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCDAEETEY 357

Query: 357 IDAIEKLIEKKVDWLN 372
           +  I KLI K+V  ++
Sbjct: 358 LRDIHKLIGKRVPVID 373


>gi|330829717|ref|YP_004392669.1| ATP-dependent RNA helicase RhlE [Aeromonas veronii B565]
 gi|328804853|gb|AEB50052.1| ATP-dependent RNA helicase RhlE [Aeromonas veronii B565]
          Length = 466

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 159/371 (42%), Positives = 226/371 (60%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY  P+PIQ + IP VL   D+   AQTGTGKTA F LPML
Sbjct: 1   MSFTSLGLAEPLLRAVAEQGYDTPSPIQQQAIPAVLAGRDLMAAAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L + + +V   R    +L PTRELAAQV ++   YGK+  +   ++ GG+    Q   
Sbjct: 61  QRLMESKRKVSPNRVRALVLTPTRELAAQVGESVRNYGKHLPMRSHVVFGGVSINPQMMA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             RG DVL+  PGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I +L+P  R
Sbjct: 121 TRRGLDVLVACPGRLIDLYNQNAVKFDEVEILVLDEADRMLDMGFIRDIRRILALMPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT  DE+++++   L NP  IEV   +STAE IE                    
Sbjct: 181 QNLLFSATFADEIRELATGLLDNPAVIEVAPRNSTAERIEQLVHPCDKANKIALLSHL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             + +  +  ++F   K     +  +L+K G S  AIHGN  Q +R + L+ FK+G++++
Sbjct: 239 -VTSNNWQQVLVFTRTKHMANRVAETLDKNGVSAAAIHGNKSQGARTRALAGFKDGSVKV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  +  V NF++PN AE+Y+HRIGRTGRAG  G A +LVA ++ K I 
Sbjct: 298 LVATDIAARGLDIDKLPQVVNFELPNVAEDYVHRIGRTGRAGAAGHAISLVAADEGKLIK 357

Query: 359 AIEKLIEKKVD 369
           AIE+L ++ + 
Sbjct: 358 AIERLTKQSIP 368


>gi|238759754|ref|ZP_04620912.1| ATP-dependent RNA helicase rhlE [Yersinia aldovae ATCC 35236]
 gi|238701986|gb|EEP94545.1| ATP-dependent RNA helicase rhlE [Yersinia aldovae ATCC 35236]
          Length = 452

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 165/450 (36%), Positives = 253/450 (56%), Gaps = 9/450 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY+ PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L + +  +   R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    Q  
Sbjct: 61  QLLSQDQQPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I            ++      
Sbjct: 181 RQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQITQSVHFVDKNRKREL---LS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G I+
Sbjct: 238 QMIGEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKSTGFDRRKKNYSSQ 416
             IE+L+++++  +  D    +P ++   I      R    P   +  G  R + +  + 
Sbjct: 358 RDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGRGAQRPGMGRGNGAGRPQSSAGAA 417

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFR 446
                 + S    + Q D Q   A      
Sbjct: 418 AGRGDSRTSR--PRSQADGQRRPAAPSARG 445


>gi|308272082|emb|CBX28690.1| ATP-dependent RNA helicase rhlE [uncultured Desulfobacterium sp.]
          Length = 398

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 155/404 (38%), Positives = 235/404 (58%), Gaps = 6/404 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F    L+P +   + DAG+V PTPIQ K IPLV+   D+ G+AQTGTGKTA+FVLP+L
Sbjct: 1   MEFKTFNLNPDIEAGIADAGFVTPTPIQTKAIPLVMDGQDIMGLAQTGTGKTAAFVLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +G  +    R+LI+ PTRELA Q+ D+    GK+  +    + GG+    Q +KL+
Sbjct: 61  HRLIQG--KRGHVRSLIIAPTRELAEQIHDDINTLGKDTRIRSVTVYGGVNINTQIQKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA++++  PGR+LDH  R  + +  +E+LVIDEAD M DMGF+P I+ I   +P  RQT
Sbjct: 119 RGAEIVVACPGRLLDHMTRKTIDLTRVEVLVIDEADHMFDMGFLPDIRRILKHLPAQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM DE++ ++++ L++P  I+V+            +       +     L +   
Sbjct: 179 LLFSATMPDEIKSLAKDILKDPITIKVSETVPADTVSHAHYPVAQHLKTAFLLKLLE--- 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K+ ++F   K    +L   L K GF   ++ GN+ Q  R   L  F+ G IQ++V
Sbjct: 236 -HINSKSVLVFTRTKHRAKHLDEQLAKAGFRSASLQGNLSQVRRQAALDGFRNGRIQVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+D+P+  + YIHRIGRTGRA + G AFTL+  ED K ++ I
Sbjct: 295 ATDIAARGIDVCKISHVINYDIPDTPDAYIHRIGRTGRADQSGDAFTLITSEDKKMVNII 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           +++I  K++           P  K  +     +R++  I + S 
Sbjct: 355 DRVIGSKIEHRTLKGFDYGKPDPKKHLQVTPGSRRHGGIRKYSA 398


>gi|226506900|ref|NP_001142117.1| hypothetical protein LOC100274281 [Zea mays]
 gi|194704910|gb|ACF86539.1| unknown [Zea mays]
 gi|194707190|gb|ACF87679.1| unknown [Zea mays]
          Length = 494

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 138/419 (32%), Positives = 220/419 (52%), Gaps = 20/419 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+G    V+  +  AG+V+PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP + 
Sbjct: 92  EFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIV 151

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA Q+     K+G +  +    + GG+P   Q + L
Sbjct: 152 HVNAQPILSPGDGPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDL 211

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 212 QKGVEIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQ 271

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL +SAT   E+++++ NFL +P ++ + +    A       V   ++  K    L  LL
Sbjct: 272 TLYWSATWPKEVEQLARNFLFDPYKVTIGSEDLKANHAIVQHVEILSESQKY-NKLVNLL 330

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +IF + KK        L   G+   +IHG+  Q  R  +LS FK G   +M
Sbjct: 331 EDIMDGSRILIFMDTKKGCDQTTRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIM 390

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD+ DV +V N+D P   E+Y+HRIGRTGRAG  G A+T     + +    
Sbjct: 391 TATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKE 450

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           +  ++E+    ++ +L+++                     P  S+G+  R + Y   +S
Sbjct: 451 LINILEEAGQKVSSELAAM-----------------GRGAPPPSSGYRDRYRGYGGGRS 492


>gi|150007803|ref|YP_001302546.1| ATP-dependent RNA helicase DeaD [Parabacteroides distasonis ATCC
           8503]
 gi|256840069|ref|ZP_05545578.1| ATP-dependent RNA helicase DeaD [Parabacteroides sp. D13]
 gi|298376828|ref|ZP_06986783.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_19]
 gi|149936227|gb|ABR42924.1| ATP-dependent RNA helicase DeaD [Parabacteroides distasonis ATCC
           8503]
 gi|256738999|gb|EEU52324.1| ATP-dependent RNA helicase DeaD [Parabacteroides sp. D13]
 gi|298266706|gb|EFI08364.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_19]
          Length = 421

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 158/424 (37%), Positives = 240/424 (56%), Gaps = 8/424 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   +  A++  GY  PTPIQ + IP+V Q +D+ G AQTGTGKTA+F +P++
Sbjct: 1   MTFEDLDLIEPIRKALVQEGYTTPTPIQSEAIPIVSQGYDLLGCAQTGTGKTAAFSIPII 60

Query: 61  TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L   + +      + LIL PTRELA Q+ ++F  YG+   L   ++ GG+  + Q + 
Sbjct: 61  QRLYLQKKKGYKRGIKALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG D+LI TPGR+LD   +G + ++ +E  V+DEADRMLDMGFI  I+ I  L+P  R
Sbjct: 121 LERGIDILIATPGRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+++++   L  P+++EV   SST + I+                  + 
Sbjct: 181 QSLFFSATMPPEIERLAGTILSEPQKVEVTPASSTVDAIDQSVYFVEKAEKINL---LKS 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L     +++ +IF   K     +   L K      AIHGN  Q +R + L+NFK+ T ++
Sbjct: 238 LLENPELESVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+  + HV N+++PN  E Y+HRIGRTGRAGR G AF+    E++  + 
Sbjct: 298 LIATDIAARGIDVDHLTHVINYELPNVPETYVHRIGRTGRAGREGVAFSFCDAEEVPLLK 357

Query: 359 AIEKLIEKKVDWLNG---DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            I+KLI K+V    G   +   +   + +   A    +++ N    K  G   R K  ++
Sbjct: 358 DIQKLIGKEVPIAGGHMYETKEVKAAVAEKKEAIKQESKRRNMFGSKRDGSYWRNKKRAA 417

Query: 416 QKSH 419
             S 
Sbjct: 418 NSSK 421


>gi|228994170|ref|ZP_04154070.1| ATP-dependent RNA helicase dbpA [Bacillus pseudomycoides DSM 12442]
 gi|228765622|gb|EEM14276.1| ATP-dependent RNA helicase dbpA [Bacillus pseudomycoides DSM 12442]
          Length = 481

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 141/411 (34%), Positives = 234/411 (56%), Gaps = 16/411 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  LS ++V A+    Y +PT +Q K IP+ L++ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFKEYALSKEIVRALTSLKYEQPTEVQGKVIPVALEKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ LIL PTRELAAQV ++    G+   +    + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALILTPTRELAAQVKEDITNIGRFKRIKATAVYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G   +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTDRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++ +S  ++++P  IE+     T + IEH          ++   L Q + +
Sbjct: 182 LFSATLPEDVENLSHTYMKSPTHIEIKASGITTDKIEH---ILLEVREEEKFSLLQDITT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++ G+    IHG + Q  R  ++++FK G  + +VA
Sbjct: 239 LENPDSCIIFCRTQENVDHVFRQLKRSGYPCDKIHGGMIQEDRFAVMNDFKRGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T V   + + +  IE
Sbjct: 299 TDVAARGIDIENITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFVTPYEERFLVEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP----QKSTGFDR 408
           + I  ++  +        P  E++   +     K N  P    +KS G ++
Sbjct: 359 EYIGFEIQKIEA------PSKEELAKGKAAFEDKINAKPIMKKEKSAGLNK 403


>gi|156740947|ref|YP_001431076.1| DEAD/DEAH box helicase domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156232275|gb|ABU57058.1| DEAD/DEAH box helicase domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 450

 Score =  171 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 151/395 (38%), Positives = 219/395 (55%), Gaps = 9/395 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F      P++   + D GY  PTPIQ + IP  L   DV GIAQTGTGKTA+FVLP+L
Sbjct: 1   MSFEIFRFHPQINAGIRDLGYHTPTPIQEQVIPHALAGRDVIGIAQTGTGKTAAFVLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +G       R +I+ PTRELA Q+    E  GK+  +    L GG+ ++ Q ++L 
Sbjct: 61  HHLMRGPR--GRVRAMIVTPTRELAEQIQGVIEALGKHTGIRSVTLYGGVGYQGQIQRLR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ +  PGR+LDH  RG L ++++E+L +DEAD+M DMGF+P ++ I  L P  RQT
Sbjct: 119 RGVEIAVVCPGRLLDHLERGTLTLDHLEVLTLDEADQMFDMGFLPDVRRILRLAPVERQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM D ++       +   R  +      +  +     A Y         L   L 
Sbjct: 179 MLFSATMPDAVRS----LAREALRDPLTVQIGRSAPVATVTHAIYPVPEHLKTSLLIELL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   ++ +IF   K     L  +L + G+   ++HGN+ Q  R   L  F+ G  Q++ 
Sbjct: 235 ERTDAESVLIFTRTKHRAQRLGDTLARLGYRATSLHGNLSQNRRQAALDGFRSGRYQILT 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+D+P  AE Y HRIGRTGRA R G AFTLV + D   + AI
Sbjct: 295 ATDIAARGIDVARISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRGDTAMVRAI 354

Query: 361 EKLIEK--KVDWLNG-DLSSLNPPLEKIDIAQHNH 392
           E+LI +  K + + G D ++  P  E    A H++
Sbjct: 355 ERLIGEPLKREIVPGFDYNAAAPVHETRSDAVHSN 389


>gi|154490238|ref|ZP_02030499.1| hypothetical protein PARMER_00470 [Parabacteroides merdae ATCC
           43184]
 gi|154089130|gb|EDN88174.1| hypothetical protein PARMER_00470 [Parabacteroides merdae ATCC
           43184]
          Length = 427

 Score =  171 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 134/433 (30%), Positives = 226/433 (52%), Gaps = 13/433 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   V+  +    +++ TP+Q  TIP++L+  D+   AQTGTGKTA++VLP++
Sbjct: 1   MRFDELDLEEAVLDGLDAMNFLETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L KG         +I+ PTRELA Q+    E +     ++   + GG    A  ++  
Sbjct: 61  NELSKGLHPANAINAIIMAPTRELAQQIDQQIEGFTYFVPVSAVAVYGGTDGIAWEQQKR 120

Query: 121 RGAD---VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGR+L H   G + ++ +   V+DEADRMLDMGF   I  +  L+P T
Sbjct: 121 GMEMGADIVIATPGRLLSHIKLGTVDLSQVSFFVLDEADRMLDMGFYDDIMQVYKLLPAT 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            QT++FSATM  +++       Q   +       + +   E      Y  Y  +   + +
Sbjct: 181 CQTIMFSATMPPKIRT----LAQTILKNPEEVKIAISRPPETIMQTAYVCYDMQKLRILE 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L S+   +  IIF + K  V  L  +L++  F+V A+H +++Q  R +++  FK G I 
Sbjct: 237 DLFSKSRPQRVIIFSSSKMKVKELASTLKRMKFNVAAMHSDLEQSQREEVMKEFKNGRID 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
           ++VA+D+ +RG+DI D+  V NFD+P+  E+Y+HRIGRT R     G A T ++ E+   
Sbjct: 297 ILVATDVVSRGIDINDIKLVINFDIPHDPEDYVHRIGRTARGTNGEGLAITFISTEEQFQ 356

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF---DRRKKNY 413
              IE+ ++K++  +  D      PL   +  ++++ R+    P+K  G    D R  + 
Sbjct: 357 FKRIEEFLDKEIYKIPVDPKFGETPL--YEPEKYSNMRRGRGRPRKDGGKGKSDNRSGSG 414

Query: 414 SSQKSHIPLKESE 426
           ++Q+    L++  
Sbjct: 415 NNQRRRGRLRKEA 427


>gi|118579798|ref|YP_901048.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118502508|gb|ABK98990.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
           2379]
          Length = 475

 Score =  171 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 144/424 (33%), Positives = 222/424 (52%), Gaps = 5/424 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L   +   + DAG+V  TPIQ +T+P+ L   DV G AQTGTGKTA+F++ + 
Sbjct: 1   MKFSELPLPEPLQNGLADAGFVDCTPIQERTLPISLSGKDVAGQAQTGTGKTAAFLVTLF 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           T    +        PR LIL PTREL  Q+  + +  G+   LT+  + GG+ +  Q   
Sbjct: 61  TRLLKDSPPEGTHHPRALILAPTRELVVQIEQDAQLLGRQCGLTIQAIYGGVDYMKQRDA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  GADV+I TPGR++D+  +    +  IE+LVIDEADRM DMGFI  ++ I   +P   
Sbjct: 121 LREGADVIIGTPGRLIDYLKQKVYSLKQIEMLVIDEADRMFDMGFIADLRFILRRLPPFD 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +      + T   + +   +       +V+       T E+     Y    K+   L   
Sbjct: 181 KRQNLMFSATLNQRVMELAYEFMNMPEKVSVTPEKM-TAENVEQVIYHASRKEKFPLLLG 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +D M+  +IF N K+    L   L   GF    I G++DQ+ R++IL  FK G + +
Sbjct: 240 LLRRDGMERTMIFINTKREGEYLHDRLNANGFPCRLISGDVDQKKRLRILEQFKSGELPI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGL I  V HV N+D+P   E+Y+HRIGRT RAG  GKA +L  ++   +++
Sbjct: 300 LIATDVASRGLHIDGVTHVVNYDLPQDCEDYVHRIGRTARAGAQGKAISLADEDGALYLE 359

Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           AIE+ I+ K+  +W   +L   +             +R     P++     R+K+  S +
Sbjct: 360 AIEEYIKAKIPCEWAEDELFVTDFKRVARPKRAPLPSRGKEARPERGKTSSRQKRTPSGK 419

Query: 417 KSHI 420
            S  
Sbjct: 420 GSET 423


>gi|163855229|ref|YP_001629527.1| putative ATP-dependent RNA helicase [Bordetella petrii DSM 12804]
 gi|163258957|emb|CAP41256.1| putative ATP-dependent RNA helicase [Bordetella petrii]
          Length = 476

 Score =  171 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 155/380 (40%), Positives = 225/380 (59%), Gaps = 8/380 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD GL P+++ +V D GY  PTPIQ + +P V+   DV G AQTGTGKTA+F LP+L 
Sbjct: 18  TFADFGLHPQLLQSVADTGYTTPTPIQAQALPAVMAGRDVMGAAQTGTGKTAAFTLPILH 77

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QV ++ ++Y K+  L  A++ GG+    Q 
Sbjct: 78  RLMPLANTSASPARHPVRTLILTPTRELADQVYESVKRYSKHTPLRSAVVFGGVDIGPQK 137

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG ++L+ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF+P +  I  L+P 
Sbjct: 138 EALRRGCEILVATPGRLLDHVEQKTVNLSQVGILVLDEADRMLDMGFLPDLDRIVRLLPA 197

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT ++E++K+   +L  P  IEV   ++TA+T+        +   +   +  
Sbjct: 198 QRQGLLFSATFSNEIRKLGRTYLNQPVEIEVAARNATADTVSQIAYQMPSDAKRAAVVHL 257

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                   +K  I+F N K     L   LE+ G    +IHG+  Q  RMK L  FK G +
Sbjct: 258 ---VKSRGLKQVIVFSNTKIGTARLARELERDGVRAESIHGDKSQADRMKALDAFKAGEL 314

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLD+  V  V N+D+P+ AE+Y+HRIGRTGRAG  G+A  L   ++ ++
Sbjct: 315 EVLVATDVAARGLDVAGVPCVINYDLPHNAEDYVHRIGRTGRAGASGEAIALFTADETRY 374

Query: 357 IDAIEKLIEKKVDWLNGDLS 376
           +  IEKL ++ V     D+ 
Sbjct: 375 LQDIEKLTKRPVPRGTLDVP 394


>gi|33152628|ref|NP_873981.1| ATP-dependent RNA helicase [Haemophilus ducreyi 35000HP]
 gi|33148852|gb|AAP96370.1| cold-shock DEAD box protein-A [Haemophilus ducreyi 35000HP]
          Length = 606

 Score =  171 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 137/370 (37%), Positives = 225/370 (60%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DLGL   ++ AV D  +V P+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 6   LTFSDLGLPQSILDAVNDMSFVTPSPIQQECIPHLLAGSDVLGMAQTGSGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++  +   R P+ L++ PTRELA QVAD  E++ KN   + V  + GG  ++ Q + L
Sbjct: 66  AQIDPNQ---RHPQMLVMAPTRELAIQVADACEQFTKNMKGIRVVTVYGGQRYDIQLRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G+ V++ TPGRILDH  RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P   Q
Sbjct: 123 KQGSQVVVGTPGRILDHIRRGTLNLSTLKSIVLDEADEMLRMGFIDDVETVMAELPEKHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+ +PK +++     +A  I   +         +        
Sbjct: 183 TALFSATMPEPIRRITRRFMSDPKEVKIQATQRSAPDITQSYWLVNGFRKNEA---LLRF 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   +++    E+ G+   A++G++ Q++R + L   K G + ++
Sbjct: 240 LEVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 300 VATDVAARGLDVERISLVVNYDIPLDSESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359

Query: 360 IEKLIEKKVD 369
           IE+L++K +D
Sbjct: 360 IEQLMKKPID 369


>gi|298368676|ref|ZP_06979994.1| ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282679|gb|EFI24166.1| ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 443

 Score =  171 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 144/376 (38%), Positives = 215/376 (57%), Gaps = 5/376 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QRLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++D    GK+  + +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIETIVEATPSDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    +NP+ IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKNPEIIEVERVDDQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGD 374
            IEK I++K+  L  +
Sbjct: 360 KIEKYIDRKLTELTVE 375


>gi|145298914|ref|YP_001141755.1| ATP-dependent RNA helicase RhlE [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851686|gb|ABO90007.1| ATP-dependent RNA helicase RhlE [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 467

 Score =  171 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 159/371 (42%), Positives = 228/371 (61%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL+  ++ AV + GY  P+PIQ++ IP VL   D+   AQTGTGKTA F LPML
Sbjct: 1   MSFSSLGLAEPLLRAVAEQGYDTPSPIQLQAIPAVLAGRDLMAAAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L + + +V     R L+L PTRELAAQV ++   YGK+  +   ++ GG+    Q   
Sbjct: 61  QRLMESKRKVSPNRIRALVLTPTRELAAQVGESVRNYGKHLPMRSHVVFGGVSINPQMMA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             RG DVL+  PGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I +L+P  R
Sbjct: 121 TRRGLDVLVACPGRLMDLYNQNAVKFDEVEILVLDEADRMLDMGFIRDIRKILALMPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT  +E+++++   L NP  IEV   +STAE IE                    
Sbjct: 181 QNLLFSATFAEEIRELATGLLNNPAVIEVAPRNSTAERIEQLVHPCDKANKIGLLSHL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             + +  +  ++F   K     +  +L+K G S  AIHGN  Q +R + L+ FK+G +++
Sbjct: 239 -VTSNDWQQVLVFTRTKHMANRVAETLDKNGVSAAAIHGNKSQGARTRALAGFKDGNVKV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  +  V NF++PN AE+Y+HRIGRTGRAG  G A +LVA ++ K I 
Sbjct: 298 LVATDIAARGLDIDKLPQVVNFELPNVAEDYVHRIGRTGRAGAAGHAISLVAADEGKLIK 357

Query: 359 AIEKLIEKKVD 369
           AIE+L ++ + 
Sbjct: 358 AIERLTKQNIP 368


>gi|242239842|ref|YP_002988023.1| DEAD/DEAH box helicase [Dickeya dadantii Ech703]
 gi|242131899|gb|ACS86201.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
          Length = 452

 Score =  171 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 164/437 (37%), Positives = 247/437 (56%), Gaps = 7/437 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY +PTP+Q + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFESLGLSADILRAVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L     +    R  R LIL PTRELAAQ+ DN   Y K   L   ++ GG+    Q  
Sbjct: 61  QLLNDNPPQAKGRRPVRALILTPTRELAAQIGDNVTAYSKYLRLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+LI TPGR+LD  ++  + ++ ++ILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILIATPGRLLDLEHQNAVDLSKVDILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDEIKALAGKLLTNPASVEVVRRNTPSELV---TQHVHLVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  Q+  +  ++F   K    +L   L K G +  AIHGN  Q +R + L+NFK+G I+
Sbjct: 238 HLIGQNNWRQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALANFKDGEIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY-SSQ 416
             IE+L+++ +  +       +P ++   I       +     Q     D   +N     
Sbjct: 358 RDIERLLKRDIPRVAIPGYEPDPSIKAEPIQNGRQGGRGGAPRQGGRSQDEGAQNRPQGD 417

Query: 417 KSHIPLKESEKISKLQQ 433
           ++  P +E       Q+
Sbjct: 418 RARHPRREGSVRPAGQR 434


>gi|119773652|ref|YP_926392.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
 gi|119766152|gb|ABL98722.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
          Length = 637

 Score =  171 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 139/372 (37%), Positives = 219/372 (58%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL+  V+ A+ + GY  PTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L 
Sbjct: 7   TFRELGLTESVLRALDELGYETPTPIQAASIQPLMSGQDILGQAQTGTGKTGAFALPLLC 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     +  P+ L+L PTRELA QVA+ F  Y K+      L I  G     Q + L 
Sbjct: 67  SVDAN---LNAPQILVLAPTRELAVQVAEAFTSYAKHMKGFHVLPIYGGQSMYQQLQALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG L ++ ++ LV+DEAD ML MGFI  I+ I    P +RQ 
Sbjct: 124 RGPQVVVGTPGRVMDHMRRGTLKLDTLKALVLDEADEMLKMGFIDDIEWILEHTPESRQL 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +++++V+   L+NP  I +    +T E+IE  FV        +  +    ++
Sbjct: 184 ALFSATMPEQIKRVANKHLRNPVNISIAASHTTVESIEQRFVQVSQHNKLEALVRVLEVE 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + +   IIF   + + + L   LE +G++   +HG+++Q++R + +   K G + +++
Sbjct: 244 NTEGI---IIFVRTRNSCMELAEKLEARGYAASPLHGDMNQQARERAVDQLKSGKLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +GHV N+D+P   E Y+HRIGRTGRAGR G A   V   +++ +  I
Sbjct: 301 ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTI 360

Query: 361 EKLIEKKVDWLN 372
           E+    ++  + 
Sbjct: 361 ERATNSRISPMK 372


>gi|302867898|ref|YP_003836535.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302570757|gb|ADL46959.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca
           ATCC 27029]
          Length = 585

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 144/366 (39%), Positives = 211/366 (57%), Gaps = 1/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL  +++ A+   GY +PTPIQ + IP +L   D+ G A TGTGKTA+F LP+L  
Sbjct: 22  FADLGLRTELLGALSALGYEEPTPIQREAIPPLLAGQDLLGQAATGTGKTAAFALPLLQR 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +  GRA    P +L+L PTRELA QV++ F +YGK+    V  + GG P   Q + L+ G
Sbjct: 82  MPVGRADGD-PVSLVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALDHG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR LDH  RG L +  +  +V+DEAD MLDMGF   I+ I    P  RQT+L
Sbjct: 141 VDVVVATPGRALDHIARGTLRLGALSTVVLDEADEMLDMGFAEDIEAILEHAPAGRQTVL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +  ++   L +P RI +      A        + Y             +   
Sbjct: 201 FSATMPARIDGLARQHLTDPVRIRIERERPVAGEAPRVRQSAYIVARAHKPAALGRVLDV 260

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           ++    I+FC  ++ V  L  ++  +G+   A+HG + Q  R +++   + GT  L+VA+
Sbjct: 261 ESPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVAT 320

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  + HV N+DVP+  E+Y+HRIGR GRAGR G A TL    + + +  IE+
Sbjct: 321 DVAARGLDVEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIER 380

Query: 363 LIEKKV 368
           +  +++
Sbjct: 381 VTGQRI 386


>gi|295085349|emb|CBK66872.1| Superfamily II DNA and RNA helicases [Bacteroides xylanisolvens
           XB1A]
          Length = 374

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 149/372 (40%), Positives = 227/372 (61%), Gaps = 5/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L ++  ++ A+ + GY  PTPIQ K IP  L + D+ G AQTGTGKTASF +P++
Sbjct: 1   MTFKELNITEPILKAIGEKGYTVPTPIQEKAIPPALAKRDILGCAQTGTGKTASFAIPII 60

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L+  +   R +  + LIL PTRELA Q+++  + Y K+  +   ++ GG+    Q   
Sbjct: 61  QHLQLDKEAARRQGIKALILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVDL 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD  ++G + ++ I+  V+DEADRMLDMGFI  I+ I   +P  +
Sbjct: 121 LRKGIDILVATPGRLLDLMSQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM D +  ++++ L+NP +I +   SST ++I       Y    K+ + L   
Sbjct: 181 QTLFFSATMPDSIISLTKSLLKNPVKIYITPKSSTVDSI---KQVVYFVEKKEKSQLLIS 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S+   ++ +IF   K N   +   L K G    AIHGN  Q +R   L NFK G  ++
Sbjct: 238 ILSKAEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A T  ++E+ K ++
Sbjct: 298 MVATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNMGTALTFCSQEERKLVN 357

Query: 359 AIEKLIEKKVDW 370
            I+KL  KK++ 
Sbjct: 358 DIQKLTGKKLNK 369


>gi|42573778|ref|NP_974985.1| ethylene-responsive DEAD box RNA helicase, putative (RH30)
           [Arabidopsis thaliana]
 gi|108861888|sp|Q8W4R3|RH30_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 30
 gi|110741550|dbj|BAE98724.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|332010323|gb|AED97706.1| DEAD-box ATP-dependent RNA helicase 30 [Arabidopsis thaliana]
          Length = 591

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 135/378 (35%), Positives = 204/378 (53%), Gaps = 3/378 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D      ++ A+   G+ +PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP L  
Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 226

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       +   P  LIL PTRELA Q+ +   K+G    +    + GG P   Q + L 
Sbjct: 227 VSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLR 286

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   RQT
Sbjct: 287 RGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQT 346

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT   E++ ++  FL++P +  + +    A    +  +       K    L  LL+
Sbjct: 347 LLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKY-NRLLTLLK 405

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF   K+    +   L   G+   AIHG+  Q  R ++L+ FK G   +M 
Sbjct: 406 QLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMT 465

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+  V N+D PN  E+YIHRIGRTGRAG  G AFT    ++ K    +
Sbjct: 466 ATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFAREL 525

Query: 361 EKLIEKKVDWLNGDLSSL 378
            K++++    +   LS+L
Sbjct: 526 VKILQEAGQVVPPTLSAL 543


>gi|10177293|dbj|BAB10554.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
          Length = 564

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 135/378 (35%), Positives = 204/378 (53%), Gaps = 3/378 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D      ++ A+   G+ +PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP L  
Sbjct: 140 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 199

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       +   P  LIL PTRELA Q+ +   K+G    +    + GG P   Q + L 
Sbjct: 200 VSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLR 259

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   RQT
Sbjct: 260 RGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQT 319

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT   E++ ++  FL++P +  + +    A    +  +       K    L  LL+
Sbjct: 320 LLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKY-NRLLTLLK 378

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF   K+    +   L   G+   AIHG+  Q  R ++L+ FK G   +M 
Sbjct: 379 QLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMT 438

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+  V N+D PN  E+YIHRIGRTGRAG  G AFT    ++ K    +
Sbjct: 439 ATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFAREL 498

Query: 361 EKLIEKKVDWLNGDLSSL 378
            K++++    +   LS+L
Sbjct: 499 VKILQEAGQVVPPTLSAL 516


>gi|256821642|ref|YP_003145605.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256795181|gb|ACV25837.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 598

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 149/373 (39%), Positives = 220/373 (58%), Gaps = 7/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLSP V+ ++   GY +P+PIQ  +IP+++   D+ G AQTGTGKTA+F LPML+
Sbjct: 9   SFDELGLSPAVLKSIKQVGYEQPSPIQSASIPVLMAGKDIIGQAQTGTGKTAAFALPMLS 68

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-E 120
            L+    +    + L+L PTRELA QVA+  + Y KN      L I G        +  +
Sbjct: 69  RLDA---KDNNTQLLVLAPTRELAIQVAEACQSYAKNMPGLNVLPIYGGQKYDIQLRQLK 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +++ TPGR++DH  RG L ++N++ LV+DEAD ML MGFI  ++ +    P TRQ 
Sbjct: 126 RGAQIVVGTPGRVMDHIRRGTLKLDNLKALVLDEADEMLRMGFIDDVEWVLGHTPKTRQI 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E++KV+E +L  P+ I++ T +STA TI   +      +           +
Sbjct: 186 ALFSATMPKEIKKVAEKYLHEPEHIKIQTKTSTATTINQRYWLVSGIHKLDALTRVLETE 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M   IIF   K     L   L  +GF   A++G+I Q +R +I+   K+G I +++
Sbjct: 246 EFDGM---IIFVRTKIATTELADKLTARGFRAEALNGDIAQTTRERIVEKLKKGQIDILI 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A   VA  + + + AI
Sbjct: 303 ATDVAARGLDVERISHVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFVAHRERRMLKAI 362

Query: 361 EKLIEKKVDWLNG 373
           E+   + +  +  
Sbjct: 363 ERATNQPITEMQM 375


>gi|332296357|ref|YP_004438280.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
           DSM 14796]
 gi|332179460|gb|AEE15149.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
           DSM 14796]
          Length = 531

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 154/383 (40%), Positives = 226/383 (59%), Gaps = 12/383 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ LS   V A+ + G+ +P+ IQ +TIP+V+Q  DV G AQTGTGKTA+F +P++  
Sbjct: 7   FGEIELSKDTVLALKEMGFEEPSEIQKQTIPIVMQGFDVIGQAQTGTGKTAAFGIPIVEK 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                 + R+P++L+L PTRELA QVA+   K  K   L V  + GG   E Q K L+ G
Sbjct: 67  TT----KDRVPQSLVLTPTRELAIQVAEEISKISKYRGLRVVPIYGGQSIERQIKALKNG 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A V+I TPGR++DH  RG L ++ I ILV+DEAD MLDMGFI  I+ I   +       L
Sbjct: 123 AQVIIGTPGRLIDHIKRGTLFLSKISILVLDEADEMLDMGFIEDIETIMKSIKNENIQTL 182

Query: 183 -FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM D +  +++ +++NP        S + E +       +   +K        +  
Sbjct: 183 LFSATMPDPIMALTKKYMKNP-----KVVSISKEQLTVPLTDQFYCEAKDKLEALCRILE 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + M   IIFC  KK V  L  SL  +G+S   +HG++ Q  R K++ +F+E  ++++VA
Sbjct: 238 TEDMDKTIIFCRTKKGVDELVASLNTRGYSAEGLHGDLTQAQRDKVMKSFRERNLEVLVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI DV HV NFD+P   E+Y+HRIGRTGRAG+ G A T +   + + +  IE
Sbjct: 298 TDVAARGLDISDVSHVINFDIPQDPESYVHRIGRTGRAGKSGIAITFITPREFRQLRLIE 357

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
           K+I   +     ++ S++  LEK
Sbjct: 358 KVIRTTIKR--KEVPSISDLLEK 378


>gi|222096052|ref|YP_002530109.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
 gi|221240110|gb|ACM12820.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
          Length = 451

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 144/409 (35%), Positives = 231/409 (56%), Gaps = 14/409 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ + IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 3   NFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 63  KIDPECSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T  TIE           +      + + 
Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQ---RVIETTDRAKPDALRFVM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           EK +   +     +     P ++++D    N      P P+KS  + +R
Sbjct: 357 EKTLGAPIQREIIE----QPKIKRVD---ENGKPVPRPAPKKSGEYRQR 398


>gi|320540183|ref|ZP_08039838.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
 gi|320029849|gb|EFW11873.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
          Length = 623

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 226/379 (59%), Gaps = 7/379 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 7   ISFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L+     ++ P+ L+L PTRELA QVA+    + K+ +    + +  G  ++ Q + L
Sbjct: 67  HNLQA---DLKAPQILVLAPTRELAVQVAEAMTDFSKHMHSVNVVALYGGQRYDVQLRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   Q
Sbjct: 124 RQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+++P+ + + +  +T   I   +   +     +        
Sbjct: 184 TALFSATMPEAIRRITRRFMKDPQEVHIQSSITTRPDISQSYWTVHGMRKNEA---LVRF 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   + +  +LE+ G+S  A++G+++Q  R + L   K+G + ++
Sbjct: 241 LEAEDFDAAIIFVRTKNATLEVAETLERSGYSSAALNGDMNQALREQTLERLKDGRLDIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 301 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 360

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+ ++  +  +    + L
Sbjct: 361 IERTMKLTIPEVELPNAEL 379


>gi|301612898|ref|XP_002935945.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 isoform 2
           [Xenopus (Silurana) tropicalis]
          Length = 1024

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 137/449 (30%), Positives = 228/449 (50%), Gaps = 15/449 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++    Y KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 347 SWVQCGISMKILNSLKKHAYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 406

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 407 HIMDQRPLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 466

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     N     +  +  +V+DEADRM DMGF P +  I   +  
Sbjct: 467 KRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNIRP 526

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S     +E   +    +      L  
Sbjct: 527 DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLEL 586

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK G  
Sbjct: 587 LGHYQEKGA--VIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGVC 644

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G AFT + ++  ++
Sbjct: 645 KLLVATSVAARGLDVKQLILVINYACPNHYEDYVHRAGRTGRAGNKGYAFTFITEDQARY 704

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     +  +L  L    ++   A+    +K +    K   FD  ++  ++ 
Sbjct: 705 AGDIIKALELSGTAVPAELEQLWNEFKEQQKAEGKIIKKTSGFSGKGFKFDETEQALAN- 763

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGF 445
                  E +K+ K    +Q++D +    
Sbjct: 764 -------ERKKLQKAALGLQDSDDEDTAL 785


>gi|301612896|ref|XP_002935944.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 isoform 1
           [Xenopus (Silurana) tropicalis]
          Length = 1049

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 137/449 (30%), Positives = 228/449 (50%), Gaps = 15/449 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++    Y KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 372 SWVQCGISMKILNSLKKHAYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 431

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 432 HIMDQRPLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 491

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     N     +  +  +V+DEADRM DMGF P +  I   +  
Sbjct: 492 KRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNIRP 551

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S     +E   +    +      L  
Sbjct: 552 DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLEL 611

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK G  
Sbjct: 612 LGHYQEKGA--VIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGVC 669

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G AFT + ++  ++
Sbjct: 670 KLLVATSVAARGLDVKQLILVINYACPNHYEDYVHRAGRTGRAGNKGYAFTFITEDQARY 729

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     +  +L  L    ++   A+    +K +    K   FD  ++  ++ 
Sbjct: 730 AGDIIKALELSGTAVPAELEQLWNEFKEQQKAEGKIIKKTSGFSGKGFKFDETEQALAN- 788

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGF 445
                  E +K+ K    +Q++D +    
Sbjct: 789 -------ERKKLQKAALGLQDSDDEDTAL 810


>gi|319940808|ref|ZP_08015147.1| DNA/RNA helicase, superfamily II [Sutterella wadsworthensis
           3_1_45B]
 gi|319805690|gb|EFW02471.1| DNA/RNA helicase, superfamily II [Sutterella wadsworthensis
           3_1_45B]
          Length = 601

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 143/368 (38%), Positives = 216/368 (58%), Gaps = 1/368 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA+LGLSP++V ++   G+ +PTPIQ   IP +L   DV G A TGTGKTA+F LP++ 
Sbjct: 3   DFAELGLSPQLVSSLTALGFEEPTPIQEAAIPAILAGSDVLGQAATGTGKTAAFALPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
               G+     P  L+L PTREL  QV+++F  YG++  + V  + GG  +  Q + L+R
Sbjct: 63  RWALGK-EPSDPVILVLTPTRELCLQVSESFHSYGRDAGIIVTPIYGGQEYGRQIRSLKR 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR LDH NRG L ++ ++ +V+DEAD MLD+GF   +  I   +P   QT 
Sbjct: 122 GTHVVVATPGRALDHINRGTLKLDAVKAVVLDEADEMLDLGFADELDAIFEALPEGVQTA 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   + K+++  L+NP RI +    +            Y             +  
Sbjct: 182 LFSATLPPRIAKIADEHLKNPVRIAIAKEETPEGEAPRVPQIAYIVGRNYRTAALGRILD 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  IIF   +  V  L  +L  +G+SV A+HG +DQ +R +++ N + G I  +VA
Sbjct: 242 LEDPELAIIFARTRNEVDELTEALRVRGYSVEALHGGLDQPTRDRVMRNARSGKIDAIVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ ++ HV NF +P   E Y+HRIGRTGRAGR G A T++   + +HI A+E
Sbjct: 302 TDVAARGIDLENLTHVINFGIPASYETYVHRIGRTGRAGRTGTAITILEPREHRHIRALE 361

Query: 362 KLIEKKVD 369
           +    K++
Sbjct: 362 RATRSKIE 369


>gi|159125976|gb|EDP51092.1| inositol 5-phosphatase, putative [Aspergillus fumigatus A1163]
          Length = 429

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 119/373 (31%), Positives = 200/373 (53%), Gaps = 5/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L 
Sbjct: 35  TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 94

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 95  VIDTV---VRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDY 151

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 152 GQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVV 211

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P R+ V     T E I+  F+A   +  K   L       
Sbjct: 212 VVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDL--YD 269

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++++
Sbjct: 270 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIS 329

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  IE
Sbjct: 330 TDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIE 389

Query: 362 KLIEKKVDWLNGD 374
                ++D +  +
Sbjct: 390 LYYSTQIDEMPMN 402


>gi|310764827|gb|ADP09777.1| ATP-dependent RNA helicase SrmB [Erwinia sp. Ejp617]
          Length = 442

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 133/439 (30%), Positives = 221/439 (50%), Gaps = 4/439 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ ++ + G+ +PT IQ + IP  L+  DV G A TGTGKTA+++LP + 
Sbjct: 5   TFSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K+ +L +A + GG+ F    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAFMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ T GR+L +          +E L++DEADRMLDMGF   I+ I++   + +QT
Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  E  +     + N     +    +  E  +       A   K    L   L 
Sbjct: 185 LLFSATLEGEAIQDFAERILNEPVE-IEADPARRERKKIQQWYYRADDIKHKTALLLHLL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   ++F  +++ V  +C  L + G +   + G + Q  R + +    +G + ++V
Sbjct: 244 KQPEVTRAVVFVRKRERVHEVCGWLREAGINNSYLEGELVQAKRNEAIKRVVDGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  ++ Y+HRIGRTGRAG+ G A +LV   D   +  I
Sbjct: 304 ATDIAARGIDIDDVSHVINFDMPVTSDTYLHRIGRTGRAGKKGIAISLVEAHDNLLLGKI 363

Query: 361 EKLIEKKVDWLNGDL--SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            + +++ +     D    +   P EK+               +     + + +     ++
Sbjct: 364 IRYVKEPIKARVIDELRPTTRAPSEKLKGKPSKKVLAKRTEQKNKQKAEEKPRVKERHRN 423

Query: 419 HIPLKESEKISKLQQDIQE 437
              + +  + +  + D  E
Sbjct: 424 RKNIGKRRQPASAKTDPAE 442


>gi|319947383|ref|ZP_08021615.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC
           700641]
 gi|319746323|gb|EFV98584.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC
           700641]
          Length = 524

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 154/420 (36%), Positives = 241/420 (57%), Gaps = 9/420 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIRT---EEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +++IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEDIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR--KNNPIPQKSTGFDRRKKNYSSQKS 418
           E L +K++  L    S+      K  +A     R   N  I      F +  +  +S+ S
Sbjct: 355 ENLTKKRMKGLKP-ASAEEAFQAKKQVALKKIERDFANEEIRSNFEKFGKDARQLASEFS 413


>gi|188994014|ref|YP_001928266.1| putative ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC
           33277]
 gi|188593694|dbj|BAG32669.1| putative ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC
           33277]
          Length = 427

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 135/431 (31%), Positives = 220/431 (51%), Gaps = 17/431 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L  +V+  +    +++ TP+Q  TIP +L+  DV   AQTGTGKTA+++LP+L
Sbjct: 1   MRFDELNLGDEVLDGLDAMNFIETTPVQAATIPPILEGRDVIACAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  G     +   +I+ PTRELA Q+    E +     ++   + GG    A  ++  
Sbjct: 61  DRLSAGEFASDVVNAVIMAPTRELAQQIDQQVEGFSYFMPVSAVAIYGGTDGVAWEQQRR 120

Query: 121 RGAD---VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             A    ++I TPGR++ H N G   ++++   V+DEADRMLDMGF   I  I   +P +
Sbjct: 121 GMAMGADIVIATPGRLISHLNLGSADLSHVSYFVLDEADRMLDMGFFDDIMQIYKQLPSS 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            QT++FSATM  +++K       +  R  +    + +   E    + Y  Y  +   + +
Sbjct: 181 CQTVMFSATMPPKIRK----LAASILRDPIEVEIAISRPPESIMQSAYICYEAQKLPILR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  Q   K  IIF + K  V  L  +L K GF+V  +H +++Q  R +++ +FK G + 
Sbjct: 237 KLFEQSAPKRTIIFASAKLKVRELTSTLRKMGFNVADMHSDLEQSQREQVMRDFKNGYVD 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
           ++VA+D+ ARG+DI ++  V N+D+P+  E+Y+HRIGRT R     G A T V++E+   
Sbjct: 297 VLVATDIVARGIDIDNIRVVINYDIPHDPEDYVHRIGRTARGTNGEGLAITFVSEEEQSD 356

Query: 357 IDAIEKLIEKKVDWLN-----GDLSSLNPPLEKIDIAQH----NHARKNNPIPQKSTGFD 407
              IE  + K V  L      G++ +  P   +   +         R      Q  T  +
Sbjct: 357 FHKIETFLGKSVYKLPVDPEFGEVPAYEPAKRRPRRSGRSGDGRSGRSEKDKRQGKTAPN 416

Query: 408 RRKKNYSSQKS 418
            RK+  + Q+ 
Sbjct: 417 GRKRGGTRQRR 427


>gi|167622568|ref|YP_001672862.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167352590|gb|ABZ75203.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 625

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 142/372 (38%), Positives = 220/372 (59%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL+  +V A+ D GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L 
Sbjct: 7   TFRELGLNESLVRALDDLGYEKPTPIQAASIEPLMANKDILGQAQTGTGKTGAFALPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++        P+ L+L PTRELA QVA+ F  Y K       L I  G   + Q   L 
Sbjct: 67  SIDPN---TNAPQILVLAPTRELAVQVAEAFASYAKYMKGLHVLPIYGGQSMQQQLNALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++DH  RG L ++ ++ +V+DEAD ML MGFI  I+ I    P TRQ 
Sbjct: 124 RGPQIIVGTPGRVMDHMRRGTLKLDTLKAMVLDEADEMLKMGFIDDIEWILEHTPKTRQL 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +++++V+  +L NP  +++   +ST ETIE  FV        +  +    ++
Sbjct: 184 ALFSATMPEQIKRVANKYLDNPVHVKIAATTSTVETIEQRFVQVSQHNKLEALVRVLEVE 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +   IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++
Sbjct: 244 KTEGI---IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAIDQLKRGQLDIII 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +GHV N+D+P   E Y+HRIGRTGRAGR G A   V   +++ +  I
Sbjct: 301 ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI 360

Query: 361 EKLIEKKVDWLN 372
           E+    ++  ++
Sbjct: 361 ERATNSRIAPMD 372


>gi|153953072|ref|YP_001393837.1| ATP-dependent RNA helicase [Clostridium kluyveri DSM 555]
 gi|219853723|ref|YP_002470845.1| hypothetical protein CKR_0380 [Clostridium kluyveri NBRC 12016]
 gi|146345953|gb|EDK32489.1| Predicted ATP-dependent RNA helicase [Clostridium kluyveri DSM 555]
 gi|219567447|dbj|BAH05431.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 481

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 137/429 (31%), Positives = 226/429 (52%), Gaps = 13/429 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  LS  ++ ++   GY  P+ +Q K IPL+L+  D+   +QTG+GKTA+F +P+ 
Sbjct: 4   LNFKDFQLSNTILESLQKLGYNSPSEVQEKVIPLILKNKDIIVKSQTGSGKTAAFAIPIC 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +E      + P+ L+L PTRELA Q+ ++F   G+   +    + G  P   Q KKL+
Sbjct: 64  EKIEI---EEKNPQALVLTPTRELALQIKEDFSYIGRLKKINCTAVFGKEPISLQIKKLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V+  TPGRILDH  R  L++  I+ LVIDEAD ML  GF+  ++++   +P  R T
Sbjct: 121 QRVHVVTGTPGRILDHIERNTLVLEKIKYLVIDEADEMLSRGFMEQVESVIGSLPKNRTT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ DE+ K+   +++NP           +   +      Y   +     L   + 
Sbjct: 181 LLFSATIPDEILKLCNVYMENPL---NIEVQCESSVKDRITQMYYKIEAPYKFSLLNKII 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +   + +IFC  KKNV +L   ++ + +S  A+HG + Q  R+  + +FK G    ++
Sbjct: 238 YTERPDSSMIFCRTKKNVDDLVLQMKARKYSCEALHGGMLQNERIDKIESFKRGEFTFLI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+D+ ++ H+ N+D+P   ENYIHRIGRTGR   +G A T V  ++  ++  I
Sbjct: 298 CTDIAARGIDVENITHIINYDIPMERENYIHRIGRTGRFTSNGTAITFVTPKEYLYLKKI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+     +   +       P LE+++  +     K    P++       K N    K +I
Sbjct: 358 EEYFHITIKEGSI------PSLEEVETGKKLFYEKLKSAPKRKEDKST-KFNRDITKIYI 410

Query: 421 PLKESEKIS 429
              + +KI 
Sbjct: 411 SAGKRKKIR 419


>gi|119178046|ref|XP_001240731.1| conserved hypothetical protein [Coccidioides immitis RS]
 gi|118575172|sp|Q1DP69|DBP2_COCIM RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 542

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 132/380 (34%), Positives = 210/380 (55%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ KPTPIQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 126 TFDEAGFPQYVISEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 185

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 186 HINAQPLLGPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQIRDL 245

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 246 SRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 305

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T ++SAT   E+++++ +FL +  ++ + +   +A       V   + + K+  ++  L 
Sbjct: 306 TCMWSATWPKEVRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMINHLE 365

Query: 240 QSQDTMKNGIIFCNQKKNV-VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  D  K+ I+     K V  ++   L + G+   +IHG+  Q  R  +L+ FK G   +
Sbjct: 366 RIMDDKKSKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPI 425

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A TL   ++ K   
Sbjct: 426 MVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQAR 485

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    ++  L+ +
Sbjct: 486 DLVNILTESKQQIDPRLAEM 505


>gi|59713334|ref|YP_206109.1| RNA helicase [Vibrio fischeri ES114]
 gi|59481582|gb|AAW87221.1| RNA helicase [Vibrio fischeri ES114]
          Length = 500

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 178/470 (37%), Positives = 261/470 (55%), Gaps = 9/470 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ++ IP V++  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G  R        +L PTRELAAQV ++ EKY KN  LT  ++ GG+    Q ++L
Sbjct: 61  ERLSNGPKRKFNQVRALVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DVL+ TPGR+LD  N+  +  + +EILV+DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 121 RRGVDVLVATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILAKLPKNRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++++++  +++P  I V   ++TAET+E                +   L
Sbjct: 181 NLLFSATFSDEIRQLAKGLVKDPVEISVAKRNTTAETVEQSVYVMDKGRK---PKVLTKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  K  ++F   K     L  +LE++G S  AIHGN  Q +R K L+NFK G ++++
Sbjct: 238 IKDNDWKQVLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N D+P   E+Y+HRIGRTGRAG  GKA + V++++ K + A
Sbjct: 298 VATDIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEAKELFA 357

Query: 360 IEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE+LI+K +    L G       P  K+D       +   P   +    D ++   +   
Sbjct: 358 IERLIQKVLPRHVLEGFEPVNKVPESKLDTRPIKPKKPKKPKAPRVEHKDGQRSGENRNG 417

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRGNM---PAFMLPKNRGKLNDK 464
           +    K+ +K +  +           G   +    P    PK +G   ++
Sbjct: 418 NKQGAKQGQKPATKRTPTNNPSGKKEGTDSDKKKRPFSGKPKTKGTGENR 467


>gi|119470813|ref|ZP_01613424.1| ATP-dependent RNA helicase, cold shock protein A [Alteromonadales
           bacterium TW-7]
 gi|119446040|gb|EAW27319.1| ATP-dependent RNA helicase, cold shock protein A [Alteromonadales
           bacterium TW-7]
          Length = 600

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 143/369 (38%), Positives = 224/369 (60%), Gaps = 8/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L LSP ++ AV + GY  P+ IQ + IPL+L+R DV G+AQTGTGKTA+F LP+L
Sbjct: 5   VTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++     V+ P+ L+L PTRELA QVA+ FE+Y K       L +  G  +  Q   L
Sbjct: 65  NNIDPS---VKQPQILVLTPTRELAIQVAEAFEQYAKGTRGVEVLALYGGQSYSIQLSAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR++DH NRG +  + ++ LV+DEAD ML MGFI  ++NI    P  +Q
Sbjct: 122 RRGAQIIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVENIMEKTPREKQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM  ++Q +S  ++ NP+++ ++  +ST  ++E  F       +K      +  
Sbjct: 182 TCLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNASVHKNKAIVRFLEAE 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q     +  I+F   + + V L   LE++GFS   ++G+++Q++R + +   K G + ++
Sbjct: 242 QY----EGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNVV 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  +E Y+HRIGRTGRAGR GKA   V   +   +  
Sbjct: 298 IATDVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKN 357

Query: 360 IEKLIEKKV 368
           I +  + ++
Sbjct: 358 IIRHTKSEI 366


>gi|72161844|ref|YP_289501.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Thermobifida fusca YX]
 gi|71915576|gb|AAZ55478.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Thermobifida fusca YX]
          Length = 562

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 143/361 (39%), Positives = 211/361 (58%), Gaps = 1/361 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL P+++ A+ + GY +PT IQ + IP +L+  D+ G A TGTGKTA+F LP+L 
Sbjct: 11  SFADLGLRPELLDALAEVGYEEPTAIQREAIPSLLEGRDLLGQAATGTGKTAAFSLPILH 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     R   P  LIL PTRELA QV++   +YG++    +  + GG P   Q + LER
Sbjct: 71  RLPDSD-RGDTPSALILVPTRELALQVSEALHRYGRHLKARILPIYGGQPIGRQLRALER 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR LDH  RG L+++ +  +V+DEAD MLDMGF   I+ I   VP  RQT+
Sbjct: 130 GVDVVVATPGRALDHIGRGTLVLDTVRTVVLDEADEMLDMGFAEDIEAIIEEVPENRQTV 189

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++ ++   L +P R+ +   S             Y             +  
Sbjct: 190 LFSATMPDRIEGIARRHLTDPVRVRIARTSPAPGEEPKVRQNAYIVARPYKPAALGRVLD 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            ++    ++FC  ++ V  L  +L  +G+   A+HG + Q  R ++++  + GT  L++A
Sbjct: 250 MESPTAALVFCRTREEVDQLTETLNARGYRAEALHGGMSQEQRDRVMARLRGGTADLLIA 309

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  + HV N++VP+  E Y+HRIGR GRAGR G A TLV   + + +  I+
Sbjct: 310 TDVAARGLDIEHLTHVVNYNVPSATETYVHRIGRVGRAGREGVAITLVEPREHRMLKTIQ 369

Query: 362 K 362
           +
Sbjct: 370 R 370


>gi|311070440|ref|YP_003975363.1| ATP-dependent RNA helicase [Bacillus atrophaeus 1942]
 gi|310870957|gb|ADP34432.1| ATP-dependent RNA helicase [Bacillus atrophaeus 1942]
          Length = 481

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 137/409 (33%), Positives = 223/409 (54%), Gaps = 12/409 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  LS ++V A+   GY+ PT +Q K +P  L++ D+   +QTG+GKTA+F +P+ 
Sbjct: 4   ISFKDYTLSAEIVRALEGLGYMSPTEVQQKVMPQALEKKDLVVKSQTGSGKTAAFGIPIC 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + +    +   P+ LIL PTRELA QV ++    G+   +  A + G  PF+ Q  +L+
Sbjct: 64  EMADWDENK---PQALILTPTRELAVQVKEDITNIGRFKRMKAAAVFGKSPFDKQKAELK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+LDH  +G   +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T
Sbjct: 121 QKTHIVVGTPGRVLDHIEKGTFPLERLKYLVIDEADEMLNMGFIEQVEAIIKHLPRDRMT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ ++++++S  +++NP+ IE+     T + IEH   +           L + + 
Sbjct: 181 MLFSATLPEDVEQLSRKYMKNPEHIEIKAAGLTTKHIEH---SVIEVREDHKFSLLKDVL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +   + IIFC  K+NV  L   L+   +    IHG + Q  R  +++ FK G  + + 
Sbjct: 238 VTENPDSCIIFCRTKENVDKLSEELDALDYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLA 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T V   + + +  I
Sbjct: 298 ATDVAARGIDIENITHVINYDLPLEKESYVHRTGRTGRAGNQGKAITFVTPYEKRFLAEI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           E  I  ++           P  E++   +     K N  P        +
Sbjct: 358 EAYIGFEIPQAEA------PSREEVSRKKPAFLEKLNDRPTVKKDKSEQ 400


>gi|300312721|ref|YP_003776813.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300075506|gb|ADJ64905.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 510

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 145/394 (36%), Positives = 225/394 (57%), Gaps = 27/394 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ +AGY  PTP+Q K IP  +   D+   +QTG+GKTA+F+LP L
Sbjct: 1   MTFEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSL 60

Query: 61  TI------------------------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG 96
                                      E+ R +   P+ L+L PTRELA QV    +KYG
Sbjct: 61  HQLADLPPAPQAARTPNQERQASRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYG 120

Query: 97  KNYNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEA 155
                  V  ++GG+P+  Q + L R  ++L+ TPGR++DH   GK+  + ++ILV+DEA
Sbjct: 121 AYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA 180

Query: 156 DRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
           DRMLDMGFI  I+ I +  P TRQT+LFSAT+   +  +++    NP  I++ + S+  E
Sbjct: 181 DRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRHE 240

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
            I            K    L   L    ++   +IF   K++   +   L   GF+  A+
Sbjct: 241 NIMQRVHFVDDLSHKNR--LLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAAL 298

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG++ Q +R + L++ + G ++++VA+D+AARG+D+P + HVFN+D+P  AE+Y+HRIGR
Sbjct: 299 HGDMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGR 358

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           TGRAGR+G A +LV   +   +  IE+  ++ + 
Sbjct: 359 TGRAGRNGVAISLVNHAEGMQVKRIERFTKQTIP 392


>gi|224370360|ref|YP_002604524.1| putative helicase of superfamily II [Desulfobacterium autotrophicum
           HRM2]
 gi|223693077|gb|ACN16360.1| putative helicase of superfamily II [Desulfobacterium autotrophicum
           HRM2]
          Length = 402

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 161/405 (39%), Positives = 236/405 (58%), Gaps = 5/405 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   GL  +++ AV   GY +PTPIQ + IP+VL+  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFEIFGLRAELLRAVAAEGYKEPTPIQDQAIPVVLRGEDVLAGAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L K   R   PR L+L PTRELAAQV  +FE  G++ +L   ++ GG+  + Q  KL+
Sbjct: 61  EMLSKTSKRTYTPRCLVLAPTRELAAQVQASFESLGRSLHLRSTVVFGGVGIQPQIDKLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+LDH  R  L ++ +EILV+DEADRMLDMGFI  I+ +  L+P  RQ 
Sbjct: 121 KGVDILVATPGRLLDHAGRRTLDLSKVEILVLDEADRMLDMGFIHDIKKVLKLLPGKRQN 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT + E+++ ++  L NPK IEV+  +  A+ +            ++         
Sbjct: 181 LLFSATYSTEIKRFADGLLNNPKIIEVSASNKAADGVTQAVYPVQKTKKRELLSTL---I 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     ++F   K     L   L   G    AIHGN  Q +R + L++FK G+I+ +V
Sbjct: 238 RNENWTKVLVFTRTKHGANRLTKQLITDGIKAAAIHGNKSQSTRTRALADFKNGSIKALV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + HV N+D+PN  E+Y+HRIGRTGRAG  G A +LV  ++ K +  I
Sbjct: 298 ATDIAARGLDIDMLPHVVNYDLPNVPEDYVHRIGRTGRAGATGIALSLVCSDEQKQLKEI 357

Query: 361 EKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           ++L++  +    ++G       P +  +      A +N     + 
Sbjct: 358 QRLLKHNIPVKTMDGFFQVQETPAKPAEFRNKRPAGQNRSAQYRR 402


>gi|320157377|ref|YP_004189756.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus MO6-24/O]
 gi|319932689|gb|ADV87553.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus MO6-24/O]
          Length = 408

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 126/371 (33%), Positives = 205/371 (55%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L P ++ A+ + GY +PT IQ + IP  L+  D+   A TGTGKTA+FVLP L 
Sbjct: 4   TFADLDLDPNLLAAIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    R   P  + IL PTRELA QVAD      KN +L +  + GG+ ++     L 
Sbjct: 64  YLQDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTSLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR++++    +     IE L++DEADRMLDMGF P +  +++   + +QT
Sbjct: 124 TTQDIVVATPGRLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT     ++  + + L +P  I+        + I   +    +   K         
Sbjct: 184 MLFSATLEGKGVEGFTADLLNDPADIDAEPSRRERKKITQWYYRADSMEHKLA---LLKD 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F   ++ + +L   LE +  +   I G + Q  R   ++ F++G++ ++
Sbjct: 241 IINNQAERTIVFLKTRERLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV NFD+P  A+ Y+HRIGRT RAG+ G A ++V   D   +D 
Sbjct: 301 LATDVAARGIDLPDVSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR 360

Query: 360 IEKLIEKKVDW 370
           + + +++ +  
Sbjct: 361 VARYVKEDIKE 371


>gi|295675961|ref|YP_003604485.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
 gi|295435804|gb|ADG14974.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 484

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 164/373 (43%), Positives = 227/373 (60%), Gaps = 8/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+P ++ A+ ++GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N + Y K+  L  A++ GG+    Q+
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQS 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  +++LV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 DQLRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   +STA  +                +  
Sbjct: 192 ERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEVAEGDKTGAVVQL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +  +K  I+FCN K     L  SLE+ G    AIHG+  Q  RM+ L  FK G +
Sbjct: 252 ---IRERGLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQSERMQALDAFKRGEV 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKKVD 369
           +  IEKLI++ +D
Sbjct: 369 LADIEKLIKRPLD 381


>gi|160937140|ref|ZP_02084503.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440041|gb|EDP17789.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
           BAA-613]
          Length = 569

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 135/384 (35%), Positives = 225/384 (58%), Gaps = 9/384 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L L  +++ A+ + G+ + +PIQ + IP+ ++  D+ G AQTGTGKTA+F LP+L
Sbjct: 4   VKFDELQLDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGLPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++    +V+  + ++L PTRELA QVA+   ++ K  +    L I  G     Q + L
Sbjct: 64  QKVDP---KVKKLQAIVLLPTRELAIQVAEEMRRFAKFMHGVKVLPIYGGQDIVKQIRSL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  V++ TPGR++DH  R  + ++++  +V+DEAD ML+MGF+  ++ I S +P  RQ
Sbjct: 121 KDGTQVIVGTPGRVMDHMRRKTVKVDHVLTVVLDEADEMLNMGFLEDMETILSQLPEERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSATM   + +++  F ++P  +          T+       Y    K    +   L
Sbjct: 181 TLMFSATMPQAIAEIARKFQKDPVTV---RVIKKELTVPKVTQYYYEVKPKNKVEVMSRL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  I+FCN K+ V +L   L+ +G+    +HG++ Q  R +++ +F+ G   ++
Sbjct: 238 LDMYAPKLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQVQRDRVMDSFRNGRTDIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR GKAF+LV  +++  +  
Sbjct: 298 VATDVAARGIDVGDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVMGKEVYKLRD 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE 383
           I++  + K+  +   + SLN   E
Sbjct: 358 IQRYCKTKI--IPQAIPSLNDITE 379


>gi|160881936|ref|YP_001560904.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160430602|gb|ABX44165.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
           ISDg]
          Length = 527

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 137/371 (36%), Positives = 220/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ L   ++ A+ + GY + TPIQ + IP+VL+  D+ G AQTGTGKTA+F +P+L  
Sbjct: 5   FDEMELQTPIIRAIEELGYEEMTPIQAQAIPVVLEGKDIVGQAQTGTGKTAAFSIPILQK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    +V+  + +IL PTRELA QV+D   K+ K  +   A+ I  G     Q + L+ 
Sbjct: 65  IDP---KVKGLQAVILCPTRELAIQVSDEMHKFSKFMHGIKAIPIYGGQDITRQIRSLKA 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR++DH  R  +  + + ++ +DEAD ML+MGF   I+ I   +P  RQTL
Sbjct: 122 GVQIVIGTPGRVMDHMRRKTVKFDKVSMIALDEADEMLNMGFREDIETILKEMPEDRQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +  ++  + ++   ++V     T   IE  +        K    +   L  
Sbjct: 182 LFSATMPQPIMDIARTYQKDATIVKVVKKELTVPKIEQYYYEVRP---KNKVDVLSRLLD 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + K  ++FCN K+ V  L  +L  +GF    +HG++ Q+ R +++S+F+ G  +++VA
Sbjct: 239 MYSPKRCLVFCNTKRQVDELVTALSGRGFFAEGLHGDLKQQQRDRVMSSFRTGKAEILVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+DVP   E Y+HRIGRTGRAGR G+AFTLV  +++  +  I+
Sbjct: 299 TDVAARGIDVDDVEAVFNYDVPQDEEYYVHRIGRTGRAGRTGRAFTLVVGKEVYKLRDIQ 358

Query: 362 KLIEKKVDWLN 372
           +  + K+  + 
Sbjct: 359 RYCKTKIKVMP 369


>gi|303238460|ref|ZP_07324994.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302593858|gb|EFL63572.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 481

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 135/406 (33%), Positives = 225/406 (55%), Gaps = 11/406 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  LS +++ A+    Y  PT +Q   IP VL+  DV   +QTG+GKTA+F +P+  
Sbjct: 5   SFENYKLSSELLKAIDMLNYKSPTKVQEMVIPAVLEHKDVIVKSQTGSGKTAAFAIPICD 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    +   P+ L++ PTRELA QV ++    G+   L V+ + G   F  Q K+L++
Sbjct: 65  LVDWDENK---PQVLVITPTRELAIQVKEDIFNLGRFKRLKVSAIYGRSSFYNQEKELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGRI+DH  RG    + I+ L+IDEAD ML MGF+  I++I   +P  R T+
Sbjct: 122 KTHVVVGTPGRIIDHLERGTFDTSKIKYLIIDEADEMLSMGFVEQIEDIIGKLPDERTTI 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  ++  + + +++NP            + I+      Y         L + + +
Sbjct: 182 LLSATLPKDIAVLCDKYMKNPV---YAEIEEENKAIDRIVQERYEVDENDKLNLLRDITT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC+ K     L   L K  ++   IHG ++Q  R++++++FK+G  + +VA
Sbjct: 239 LENPDSCIIFCSTKIKTDELFDELAKLNYTCEKIHGGMEQSDRLRVMNDFKQGYFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI D+  V N+D+P   E+Y+HRIGRTGR  R+GKA T V  ++ K++D I 
Sbjct: 299 TDVAARGIDIDDISLVINYDIPQDKESYVHRIGRTGRVDRNGKAITFVTPDESKYLDDIH 358

Query: 362 KLIEKKVDWLN-GDLSSLNPP----LEKIDIAQHNHARKNNPIPQK 402
           K I K+++     D  ++       +EK++ A     RK   + + 
Sbjct: 359 KYIGKEIELKERPDKEAVKDKEQEFIEKMNGAPEIKQRKGEQLSRD 404


>gi|237746640|ref|ZP_04577120.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
 gi|229377991|gb|EEO28082.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
          Length = 461

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 239/465 (51%), Gaps = 29/465 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL P ++ A+    Y  PTP+Q K IPL ++  D+   +QTG+GKTA+F+LP L
Sbjct: 1   MTFETLGLHPSILKALAGIHYDIPTPVQTKAIPLAIEGKDLLVSSQTGSGKTAAFMLPAL 60

Query: 61  TILEKG------------------------RARVRMPRTLILEPTRELAAQVADNFEKY- 95
                                         R +   P+ L+L PTRELA Q+  + E+Y 
Sbjct: 61  HRFATQKISETSQKTPNQQRQSAKAKGERARFKAAQPKMLVLTPTRELALQIVSSTEQYS 120

Query: 96  GKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEA 155
               +     ++GG+P+  Q + L R  ++L+ TPGR++DH   GK+  + +EILV+DEA
Sbjct: 121 ACLKHFRTVAILGGMPYPKQMQLLARNPEILVATPGRLIDHMQSGKIRFDQLEILVLDEA 180

Query: 156 DRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
           DRMLDMGFI  I+ + +  P TRQT+LFSAT+   + K++ +   + + I + + +S  E
Sbjct: 181 DRMLDMGFIDDIETVIAATPATRQTMLFSATLDGIVGKMARSVTHDAESIHITSSASRHE 240

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
            IE           K    L        ++   ++F   K++   +   L   GFS  A+
Sbjct: 241 NIEQMIHYVDDLPHKNR--LLAHWLQDRSLGQALVFTATKRDADLVADRLAIAGFSTAAL 298

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG++ Q +R + L+  ++G ++++VA+D+AARG+DIP + HVFN+D+P   E+Y+HRIGR
Sbjct: 299 HGDMPQNARNRTLAKLRDGKVKILVATDVAARGIDIPSITHVFNYDLPKFPEDYVHRIGR 358

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           TGRAGRHG A +LV+  D   +  IE+  ++ +      +    P +     A     + 
Sbjct: 359 TGRAGRHGLAISLVSHSDSASMKRIERFTKQTIPV--NVIEGFEPKMTFRPTAPSKRGKP 416

Query: 396 NNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDA 440
                 +     +  + + S+ ++       +  + ++      A
Sbjct: 417 GWKPGSRKQAASKTGQRHFSKPANATRNTEARPRRHRKSEHRQAA 461


>gi|320538877|ref|ZP_08038553.1| putative RNA helicase [Serratia symbiotica str. Tucson]
 gi|320031037|gb|EFW13040.1| putative RNA helicase [Serratia symbiotica str. Tucson]
          Length = 437

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 167/441 (37%), Positives = 246/441 (55%), Gaps = 13/441 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS +++ AV + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFKTLGLSAEILRAVEEQGYREPTPIQRQAIPMVLAGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 E+     R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    Q  
Sbjct: 61  QLLSQHEQPAKGRRPVRALILTPTRELAAQIGENVDAYSKYLRLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD       L     ILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEQNAVDLSKIE-ILVLDEADRMLDMGFIHDIRRVLAKLPAK 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++   L NP  +EV   ++ +E I     + Y    K+   L  
Sbjct: 180 RQNLLFSATFSDDIKALANKLLHNPASVEVARRNTASEQI---EQSVYFVDKKRKRELLS 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +      K  ++F   K    +L   L K G +  AIHGN  Q +R + L++FKEG I+
Sbjct: 237 QMIGAGDWKQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKEGKIR 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ K +
Sbjct: 297 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLL 356

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKI----DIAQHNHARKNNPIPQKSTGFDRRKK 411
             IE+L+++++    L G         E+I     +        N+   +  +G + R +
Sbjct: 357 RDIERLLKREIPRIALPGYEPDPTIKAEQIINGRQLPGAIRGGGNSGQRENRSGGNARPQ 416

Query: 412 NYSSQKSHIPLKESEKISKLQ 432
               ++S  P + S    + +
Sbjct: 417 GEGQRRSGAPSRGSRSRKQTE 437


>gi|293373074|ref|ZP_06619442.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CMC 3f]
 gi|292631960|gb|EFF50570.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CMC 3f]
          Length = 422

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 139/416 (33%), Positives = 230/416 (55%), Gaps = 19/416 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ + IP++L+  D+  +AQTGTGKTA+F+LP+L
Sbjct: 1   MKFSELQLNANVLEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
             L +G+        +I+ PTRELA Q+    E +     ++   + GG     FE Q K
Sbjct: 61  NKLSEGKHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIAKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++   L NP  I+        +       A Y  Y  +   + +
Sbjct: 181 RQTIMFSATMPAKIQQLANTILNNPSEIKPAVSKPAEKI----IQAAYVCYENQKLGIIR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   +  +  I+F + K  V  +  +L+    +V  +H +++Q  R  ++  FK G I 
Sbjct: 237 SLFMDEVPERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V NFDVP+ +E+Y+HRIGRT RA   G A T +++++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQSNF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            +IE  +EK++  +        P  E++  A     R  +    K  G + ++K++
Sbjct: 357 KSIENFLEKEIYKI--------PIPEELGEAPEYKPRSFS----KGKGGNYKRKDF 400


>gi|320158163|ref|YP_004190541.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
 gi|319933475|gb|ADV88338.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
          Length = 443

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 131/422 (31%), Positives = 199/422 (47%), Gaps = 11/422 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + K T IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKDLGLDNRLLKNLKHLDFQKATKIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      R PR +IL PTRELA QV           +    L++GG  F  Q K L
Sbjct: 61  HKSLKTKALSARDPRGVILAPTRELAKQVYGELRTMLGGLSYDATLIVGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH     + +  +E LV+DEADRMLD+GF P ++ I +     R+
Sbjct: 121 ARYPKFIVATPGRLADHLEHKSVFLEGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +              +    S  E  +         +      L + +
Sbjct: 181 QTLMFSATLDHAEVNDIASEMLDAPKRIAIGVSNEEHKDITQRFYLCDHLDHKEALLERV 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+   +  IIF   + +   L   L ++     A+ G+++Q  R  I+S F+    +++
Sbjct: 241 LSEAEYRQVIIFTATRSDTDRLTEKLNEKKLKAIALSGSLNQNQRNTIMSQFERTVFKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDI  V HV NFD+P   E Y+HRIGRTGRAG  G A +LV  +D      
Sbjct: 301 VTTDVASRGLDISTVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAISLVGPKDWDSFKR 360

Query: 360 IEKLIEKKV-----DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK---STGFDRRKK 411
           +E  +++ +     D L G    + P   K D      A      PQK   S    +R K
Sbjct: 361 VEAYLQQDIAFSEFDDLKGKFKGIKP--RKPDFRAKKQATTKKARPQKKAVSKAPAKRDK 418

Query: 412 NY 413
           ++
Sbjct: 419 SF 420


>gi|253991618|ref|YP_003042974.1| ATP-dependent RNA helicase RhlB [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783068|emb|CAQ86233.1| ATP-dependent RNA helicase [Photorhabdus asymbiotica]
          Length = 428

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 140/419 (33%), Positives = 218/419 (52%), Gaps = 9/419 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKV+ A+ + G+   TPIQ  T+P  ++  DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVIEALDNKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKTLAFLASAFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLTHPIAKGRQTNQPRALIMAPTRELAVQIYSDAEDLAQTTGLKMGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +G + +N ++++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYTKQGHINLNAVQVVVLDEADRMYDLGFIKDIRWLFRRMPSA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + +    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 NERMNLLFSATLSYRVRELAFEQMNHAEYVEVEPLQ-KTGHRIREELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G I 
Sbjct: 249 TLLEEEWPDRCIIFANTKHRCEDIWAHLAADGHRVGLLTGDVAQKKRLRILEEFSNGNID 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            AIE  I+ ++     +    L  L  P  +      NH R+NN   + +T  + RK++
Sbjct: 369 PAIEDYIQHQIPVSKYNSNALLKDLPVPKRRHRSRSGNHQRRNNLSHRNNTPRNNRKRS 427


>gi|59712397|ref|YP_205173.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|59480498|gb|AAW86285.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 398

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 153/403 (37%), Positives = 240/403 (59%), Gaps = 8/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ A+ + GY  PTPIQ K IP+ L   ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSDPILKAIDELGYKAPTPIQQKAIPVALTGKNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            IL +   +VR    R LIL PTRELA QV +N ++Y K+ ++T   + GG+ ++ Q ++
Sbjct: 61  EILSEDPTKVRAKRIRALILTPTRELAIQVEENIQQYSKHIDITSLAMYGGVDYKEQKQR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G DVL+ TPGR+LD + +  +  + ++ILV+DEADRMLDMGFI  I  I   +P  R
Sbjct: 121 LIEGVDVLVATPGRLLDMYTQRAIHFDELDILVLDEADRMLDMGFIEDINKIIERLPLDR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT++D+++ +++  + NP  I ++  ++++  I+                    
Sbjct: 181 QNMLFSATLSDQVRYLAKTAINNPIEISISPKTTSSPQIDQWLTTVDKDKKSALLSHL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++     +IF   K     L   LEK+     A H    Q +R K+L++FKEG +Q 
Sbjct: 239 -IKENNWNQALIFIETKHGAAKLVSQLEKRDIRAEAFHSGRSQEARAKVLNDFKEGKLQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+ +AARG+DI ++  V N+D+P  A++Y+HRIGRTGRAG  G+A + V+K+D K++ 
Sbjct: 298 LVATGIAARGIDIDELTRVVNYDLPFPADDYVHRIGRTGRAGAKGEAISFVSKDDFKNLC 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            IE  +   +  +  ++     P +++ I+  N+  K  P P+
Sbjct: 358 MIESRLGHLI--VRKEIEGF-APRKEVPISILNYKPKRKPTPK 397


>gi|53713588|ref|YP_099580.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46]
 gi|60681868|ref|YP_212012.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|253565577|ref|ZP_04843032.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5]
 gi|265763909|ref|ZP_06092477.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16]
 gi|52216453|dbj|BAD49046.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46]
 gi|60493302|emb|CAH08086.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|251945856|gb|EES86263.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5]
 gi|263256517|gb|EEZ27863.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16]
 gi|301163360|emb|CBW22910.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 638R]
          Length = 418

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 133/375 (35%), Positives = 215/375 (57%), Gaps = 7/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ + IP++L+  D+  +AQTGTGKTA+F+LP+L
Sbjct: 1   MKFSELQLNDNVLEALDAMRFEECTPIQEQAIPVILEGRDLIAVAQTGTGKTAAFLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
             L +G         +I+ PTRELA Q+    E +     ++   + GG     FE Q K
Sbjct: 61  NKLSEGGHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLMLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYEDIMQIVKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++   L NP  +++       +       A Y  Y  +   + +
Sbjct: 181 RQTIMFSATMPAKIQQLANTILNNPAEVKLAVSKPAEKI----VQAAYVCYENQKLGIVR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L +++  +  IIF + K  V  +  +L+    +V  +H +++Q  R  I+  FK G I 
Sbjct: 237 SLFAEEVPERVIIFASSKIKVKEVAKALKMMKLNVGEMHSDLEQVQREFIMHEFKSGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ +RG+DI D+  V NFDVP+ +E+Y+HRIGRT RA   G A T V +++  + 
Sbjct: 297 ILVATDIVSRGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNF 356

Query: 358 DAIEKLIEKKVDWLN 372
             IE  +EK++  + 
Sbjct: 357 KNIENFLEKEIYKIP 371


>gi|39104531|dbj|BAC98030.2| mKIAA0801 protein [Mus musculus]
          Length = 1044

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 132/445 (29%), Positives = 223/445 (50%), Gaps = 14/445 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ ++   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 390 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 449

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K   L V  + GG     Q  +L
Sbjct: 450 HIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 509

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA++++CTPGR++D              L        +   F+     I   V   RQ
Sbjct: 510 KRGAEIIVCTPGRMIDMLAANSGKSRVFYYLFSLLFVLDMI--FVEADLRIVDNVRPDRQ 567

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++FSAT    ++ ++   L  P  ++V   S     +E   +    +      L     
Sbjct: 568 TVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGH 627

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + IIF +++++   L   L +  +   ++HG IDQ  R  I+++FK GT +L+
Sbjct: 628 YQESG--SVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL 685

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRAG  G A+T + ++  ++   
Sbjct: 686 VATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGD 745

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           I K +E     L+G  +++ P LEK+     +  +    I +KS+GF  +   +   +  
Sbjct: 746 IIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQA 798

Query: 420 IPLKESEKISKLQQDIQENDADSLG 444
           +   E +K+ K    +Q++D +   
Sbjct: 799 L-ANERKKLQKAALGLQDSDDEDAA 822


>gi|70985190|ref|XP_748101.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus fumigatus Af293]
 gi|66845729|gb|EAL86063.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus fumigatus Af293]
          Length = 505

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 119/373 (31%), Positives = 200/373 (53%), Gaps = 5/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L 
Sbjct: 111 TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSIGILQ 170

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 171 VIDTV---VRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDY 227

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 228 GQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVV 287

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P R+ V     T E I+  F+A   +  K   L       
Sbjct: 288 VVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDL--YD 345

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++++
Sbjct: 346 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIS 405

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  IE
Sbjct: 406 TDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIE 465

Query: 362 KLIEKKVDWLNGD 374
                ++D +  +
Sbjct: 466 LYYSTQIDEMPMN 478


>gi|154150192|ref|YP_001403810.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Methanoregula boonei 6A8]
 gi|153998744|gb|ABS55167.1| DEAD/DEAH box helicase domain protein [Methanoregula boonei 6A8]
          Length = 532

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 134/373 (35%), Positives = 209/373 (56%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL LS ++  A+ + G+ +PTPIQ   IPL+    DV   AQTGTGKT++F +P++
Sbjct: 5   LQFSDLSLSKEIAKAIENMGFEEPTPIQALAIPLIQAGRDVTAQAQTGTGKTSAFGIPVI 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++  +  V++    +L PTRELA Q+A+ F            L +  G P E Q K L
Sbjct: 65  ENIDASQRVVQVI---VLCPTRELAIQIAEEFSHLLAYLPKISVLPVYGGQPIERQLKAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  ++I TPGR++DH  R  L ++++ ++V+DEAD+MLDMGF   I+ I   VP  RQ
Sbjct: 122 ANGVHIVIGTPGRVMDHLKRRTLSLDHVSMVVLDEADQMLDMGFRDDIELILKRVPQKRQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT+   + ++S+ F     R E         T+     +      +        +
Sbjct: 182 TLLFSATLPKPIIEISKRF---QNRPEFVRVEYQELTVPAIEQSYIEVRDRDKLDSLCRV 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  IIFCN K+   +L   +  +G+    +HG++ Q  R +++  F++GTI ++
Sbjct: 239 IDVVDPQLAIIFCNTKRGAEDLAGRIRARGYRAEELHGDMKQSQRDRVMGGFRKGTIDIL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+ DV  V N+DVP   + YIHRIGRTGRAG+ G+A T V   D   +  
Sbjct: 299 IATDVAARGIDVEDVDMVINYDVPQDVDYYIHRIGRTGRAGKSGRAITFVTSRDFTKLRE 358

Query: 360 IEKLIEKKVDWLN 372
           I+K I+ ++    
Sbjct: 359 IQKYIKVQIPRKP 371


>gi|113970505|ref|YP_734298.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113885189|gb|ABI39241.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 487

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 158/459 (34%), Positives = 244/459 (53%), Gaps = 17/459 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F+ LGL   +V AV + GY  PTPIQ K IP +L   +V   AQTGTGKTASFVLP +
Sbjct: 1   MPFSQLGLHSALVKAVTELGYTTPTPIQTKAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +  + R +  R +IL PTRELA QV +N  +Y K   LT   + GG+    Q K+L
Sbjct: 61  HRFADAPKIRPKRVRAIILTPTRELALQVEENINQYAKYLPLTAMAMYGGVDAAPQKKRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + + +LV+DEADRMLDMGFI  I +I   +P  RQ
Sbjct: 121 IEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINSIIEKLPEQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++ ++++ + +   IE++     +    H           K + L   L
Sbjct: 181 NLLFSATLSKQVKALAKSAIPDAIEIEISR---KSAASTHIDQWLTTVDKDKKSALLSHL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++     +IF   K     L   LEK+G    A H    Q  R ++L +FK G +  +
Sbjct: 238 IQENNWSQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLIDFKAGKVSFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +A+RG+DI  +  V N+D+P+ A++YIHRIGRTGRAG  G+A + V+K+D +++ A
Sbjct: 298 VATGVASRGIDIDALARVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           IE+ +   +  +  +++   P    P+  +D    + +      P K T    + + YSS
Sbjct: 358 IERRLGHVI--VRREIAGFEPKKIVPISILDFVPKSASTTERK-PHKPTDTSAQPRPYSS 414

Query: 416 QK------SHIPLKESEKISKLQQDIQENDADSLGFRGN 448
            K      +      S K +   +  +       G R +
Sbjct: 415 GKPGTFEATQAKKHRSAKATPAPKAPKTGTDSRSGTRSD 453


>gi|116748890|ref|YP_845577.1| DEAD/DEAH box helicase domain-containing protein [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697954|gb|ABK17142.1| DEAD/DEAH box helicase domain protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 471

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 164/466 (35%), Positives = 246/466 (52%), Gaps = 21/466 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS +++ A+ D  Y  PTPIQ + +P++L   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFHSLGLSAELLRAIADQHYKHPTPIQQQAVPVILDGKDVLAGAQTGTGKTAGFALPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                          R LIL PTRELAAQV ++   YGK   L  A++ GG+    Q  K
Sbjct: 61  QLLSKRPRTKGKTSVRALILTPTRELAAQVEESVASYGKYLPLKAAVVHGGVNINPQIAK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+LDH  +  L +  +EILV+DEADRMLDMGFI  I+ I +L+P  R
Sbjct: 121 LRRGIDILVATPGRLLDHVQQRTLDLCAVEILVLDEADRMLDMGFIRDIRKILALLPVRR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLF AT +DE++ ++E+ L++P  IE    ++ AE++            ++       
Sbjct: 181 QNLLFFATFSDEIKTLAEDLLRSPVLIETERRNTPAESVAQLIHPVDRVRKRELLSFL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               +  +  ++F   K     L   LE  G    AIH N  Q +R + L++FK G +++
Sbjct: 239 -IGSNNWRQVLVFTRTKHGADRLTRQLEHDGIRAAAIHSNKSQATRTRSLADFKHGDVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV NF++P+ + +Y+HRIGRTGRA R G A +LV+ ++ + + 
Sbjct: 298 LVATDIAARGLDIDHLPHVVNFELPSVSRDYVHRIGRTGRAERSGTAISLVSIDEREQLK 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IE+L+ + +            P E I   + + + K+ PI +     ++R+   S    
Sbjct: 358 EIERLLNRAI------------PREIIKGYEPDPSIKSEPILRGRNDSNQRRPGNSKPSR 405

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
                +S  +   +Q        + G         LP        +
Sbjct: 406 FRGSADSPDLGANRQYSPGKGRRNEGHGNE----GLPTRGPGDASR 447


>gi|302875685|ref|YP_003844318.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307689114|ref|ZP_07631560.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302578542|gb|ADL52554.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
           743B]
          Length = 472

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 147/413 (35%), Positives = 226/413 (54%), Gaps = 8/413 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  L+  ++ ++    +  PT +Q K IPL L   D+   AQTG+GKTA+F +P++
Sbjct: 2   INFKDFNLNESMLKSLKLMNFDVPTEVQEKVIPLALSGDDIIVKAQTGSGKTAAFAIPII 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L      V+    L+L PTRELA QV + F   G    +    + G  P   Q  +L 
Sbjct: 62  ENLIANENAVQA---LVLTPTRELAVQVQETFSTLGVYKKIKTVAVYGKQPMSIQKNQLS 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR LDH  +G L +++++ L+IDEAD ML+MGFI  ++NI   VP  RQT
Sbjct: 119 QRVHIVVGTPGRTLDHIEKGNLDISSVKYLIIDEADEMLNMGFIDEVENIIKKVPKLRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT++ E++++   ++ +PK IE+   + T   I       Y         L + L 
Sbjct: 179 LMFSATLSYEIKELINKYMFSPKLIELTPETLTVAKINQ---KYYEIDENLKYNLLEDLI 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +   I+FC  KKNV  L   +    +SV  IHG++ Q  R+  L  FKE   Q +V
Sbjct: 236 KTEDITKAILFCRTKKNVAYLASRMRVSSYSVTEIHGDMLQNDRLSALKAFKEDKFQFIV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ +V HVFN+D+P   E Y+HRIGRTGRAG  G+A T V + + K + AI
Sbjct: 296 ATDVAARGIDVNNVSHVFNYDIPLELEAYVHRIGRTGRAGSSGEAITFVTRYEDKFLKAI 355

Query: 361 EKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           E+ I  K+           LN P ++   +      K++ I +      ++KK
Sbjct: 356 EEFINMKIPQGIHPSKEEVLNAPKKEFKPSVAKINNKSSDIIKIHINGGKKKK 408


>gi|315612763|ref|ZP_07887674.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis ATCC 49296]
 gi|315314873|gb|EFU62914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis ATCC 49296]
          Length = 525

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 145/373 (38%), Positives = 226/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS +++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIRT---EEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T E ++  ++    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTHL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|237713858|ref|ZP_04544339.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409233|ref|ZP_06085777.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645798|ref|ZP_06723482.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CC 2a]
 gi|294809471|ref|ZP_06768175.1| ATP-dependent RNA helicase RhlE [Bacteroides xylanisolvens SD CC
           1b]
 gi|229446014|gb|EEO51805.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352980|gb|EEZ02076.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638877|gb|EFF57211.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CC 2a]
 gi|294443343|gb|EFG12106.1| ATP-dependent RNA helicase RhlE [Bacteroides xylanisolvens SD CC
           1b]
          Length = 374

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 149/372 (40%), Positives = 227/372 (61%), Gaps = 5/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L ++  ++ A+ + GY  PTPIQ K IP  L + D+ G AQTGTGKTASF +P++
Sbjct: 1   MTFKELNITEPILKAIGEKGYTVPTPIQEKAIPPALAKRDILGCAQTGTGKTASFAIPII 60

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L+  +   R +  + LIL PTRELA Q+++  + Y K+  +   ++ GG+    Q   
Sbjct: 61  QHLQLDKEAARRQGIKALILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVDL 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD  ++G + ++ I+  V+DEADRMLDMGFI  I+ I   +P  +
Sbjct: 121 LRKGIDILVATPGRLLDLMSQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM D +  ++++ L+NP +I +   SST ++I       Y    K+ + L   
Sbjct: 181 QTLFFSATMPDSIISLTKSLLKNPVKIYITPKSSTVDSI---KQLVYFVEKKEKSQLLIS 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S+   ++ +IF   K N   +   L K G    AIHGN  Q +R   L NFK G  ++
Sbjct: 238 ILSKAEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A T  ++E+ K ++
Sbjct: 298 MVATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNMGTALTFCSQEERKLVN 357

Query: 359 AIEKLIEKKVDW 370
            I+KL  KK++ 
Sbjct: 358 DIQKLTGKKLNK 369


>gi|254428186|ref|ZP_05041893.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
 gi|196194355|gb|EDX89314.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
          Length = 457

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 152/371 (40%), Positives = 226/371 (60%), Gaps = 4/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL   +  AV + GY  P+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MHFSDLGLCDALQAAVAERGYDTPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G   R    R L+L PTRELAAQVA++   YGKN  LT +++ GG+    Q ++L
Sbjct: 61  ERLRTGTPARNNQVRALVLTPTRELAAQVAESVSTYGKNLPLTSSVVFGGVKINPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR+LD + +  +  +++E+L++DEADRMLDMGFI  I+ I S +P  RQ
Sbjct: 121 RGGCDVLVATPGRLLDLYQQNAVKFDHLEVLILDEADRMLDMGFIHDIRKILSKLPPKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT + E++ +++  + +P  ++++  ++T E +            K+   L   L
Sbjct: 181 NLMFSATFSPEIRALAKGLVNDPVEVDISPRNTTTELV---TQWIAPVDKKRKPALLTHL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      ++F   K     L   LE  G    AIHGN  Q +R + L++FK G ++ +
Sbjct: 238 IQEHGWFQVLVFSRTKHGANKLAKQLEANGIEAAAIHGNKSQNARTRALADFKNGKVRAL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N D+PN  E+Y+HRIGRTGRAG  G+A +LV+ ++ + +  
Sbjct: 298 VATDIAARGLDIEQLPQVVNVDLPNVPEDYVHRIGRTGRAGATGQAISLVSADEFQQLKD 357

Query: 360 IEKLIEKKVDW 370
           IE+L +++++ 
Sbjct: 358 IERLTQQQLER 368


>gi|119471733|ref|ZP_01614093.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Alteromonadales bacterium TW-7]
 gi|119445356|gb|EAW26644.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Alteromonadales bacterium TW-7]
          Length = 465

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 164/470 (34%), Positives = 255/470 (54%), Gaps = 12/470 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AVL+ GY  PTPIQ + IP +++R DV   AQTGTGKTA F LP++
Sbjct: 1   MSFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLI 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G   +    R LIL PTRELA QV++N E+Y K+ N++  ++ GG+    Q ++L
Sbjct: 61  ERLSTGPKAKSNHVRALILAPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR++D  N+  +  +++E+LV+DEADRMLDMGFI  I+ + + +P  RQ
Sbjct: 121 RKGVDILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +D+++ +++  + +P  I V   ++TA+++     A                
Sbjct: 181 NLMFSATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQSVYAVDKGRKTALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  ++F   K     L   LE+      AIHGN  Q +R+K L  FK G ++++
Sbjct: 238 IRSNDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLDI ++ HV N+D+PN  E+Y+HRIGRTGRAG  G A + V  +D   +  
Sbjct: 298 VATDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTVDDAVDLYG 357

Query: 360 IEKLIEKKVDWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIPQK-----STGFDRRKKNY 413
           IE+ I + +     +    +NP  E+   A+   A+K             +     KK  
Sbjct: 358 IERFIGELIPRAEEEGFEPVNPVAERALDARPLPAKKPKKKQPFNKPKSDSSKPNSKKPN 417

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
           +      P +   K    ++D  +N  +    R ++      + R   ND
Sbjct: 418 NGGNGTGPRRGGSKKPATKKD--DNAQNPWAKRQSVGGNGQRRRRPNNND 465


>gi|187923247|ref|YP_001894889.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
 gi|187714441|gb|ACD15665.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 489

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 171/431 (39%), Positives = 243/431 (56%), Gaps = 17/431 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+P ++ AV ++GY  PTPIQ + IP+VL   D+ G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L    +    P        IL PTRELA QVA N + Y K+  L  A++ GG+    Q+
Sbjct: 72  RLLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQS 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 EQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   +STA  +                +  
Sbjct: 192 ERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEVAEGDKTGAVVQL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +  +K  I+FCN K     L  SLE+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 ---IRERGLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRTQNERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  IEKLI++ +D     + +           +H+H  +     + S G + R     + 
Sbjct: 369 LADIEKLIKRPLDVQRLTVEA---------PVRHHHEERAPRRERSSEGREDRGSRRRTG 419

Query: 417 KSHIPLKESEK 427
            S         
Sbjct: 420 ASSGSYDRPHH 430


>gi|91792246|ref|YP_561897.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91714248|gb|ABE54174.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 433

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 148/402 (36%), Positives = 230/402 (57%), Gaps = 8/402 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P+++ A+ + GY   TP+Q + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MKFESFSFAPEILRAIAECGYQNMTPVQQQAIPAIRRGEDVLASAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             + +    V+       IL PTRELAAQVADN   Y K+ N++V  + GG+    Q +K
Sbjct: 61  QKMHERPMTVQHSNARALILTPTRELAAQVADNISAYSKHMNISVLTIYGGMKMATQAQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++GAD+++ TPGR+L+H     L ++N+E LV+DEADRMLDMGF   IQ I   V   R
Sbjct: 121 LKQGADIIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSTDIQKILQAVNKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  ++K++ + L  PK I  +  ++TA T+         +  ++       
Sbjct: 181 QNLLFSATFSTAVKKLANDMLDKPKIISADKQNTTAATVSQVVYPVEQRRKRELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  +  ++F   + +   L   L   G     +HG   Q SR + L  F EG +++
Sbjct: 239 -IGTKNWQQVLVFTATRADADKLVTELNLDGIPSAVVHGEKAQGSRRRALREFIEGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDI  + +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLA 357

Query: 359 AIEKLIEKKVDWLN---GDLSSLNPPLEKIDIAQHNHARKNN 397
            IEKLI +K+  +     ++SS    L+ I+  +    ++  
Sbjct: 358 DIEKLIGQKIRRITVPGYEVSSRELLLKTIEKRRSFGKKQER 399


>gi|260063256|ref|YP_003196336.1| DEAD/DEAH box helicase-like protein [Robiginitalea biformata
           HTCC2501]
 gi|88783350|gb|EAR14522.1| DEAD/DEAH box helicase-like protein [Robiginitalea biformata
           HTCC2501]
          Length = 422

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 159/413 (38%), Positives = 231/413 (55%), Gaps = 9/413 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L+  ++ A+    Y +PT IQ + IP VL R DV G AQTGTGKTA+F +P+L
Sbjct: 1   MTFEQLELAEPILRALKKENYSRPTDIQAQAIPHVLNRRDVMGSAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             LE+ R    +  +   LI+ PTRELA Q+ ++   YG    +   ++ GG+    Q +
Sbjct: 61  QHLERDRRYGGKRGVVNALIVTPTRELAIQIGESLTAYGHYTGIRNTVIFGGVKQGKQVE 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+L+ TPGR+LD  ++G + ++ +E  V+DEADRMLDMGFI  I+ I + +P  
Sbjct: 121 ALRRGVDILVATPGRLLDLMDQGIISLSKVEYFVLDEADRMLDMGFIHDIRKIIARLPAE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+L FSATM D++  +S   L +P ++ V+  SSTAETI      T             
Sbjct: 181 RQSLFFSATMPDDIVSLSRKILSDPVKVAVSPVSSTAETIRQYLYYTNKSDKNDL---LL 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +     M   ++F   K     +  +L K+  S  AIHGN  Q  R K L  FK+G ++
Sbjct: 238 HILKDPDMDQVLLFARTKHGADRIVKNLGKKKISAAAIHGNKSQNQRQKALGQFKDGKVR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  + +V NFD+PN AE Y+HRIGR+GRAG  G + +L   E+  +I
Sbjct: 298 VLVATDIAARGIDIDQLRYVVNFDIPNVAETYVHRIGRSGRAGEEGVSISLCEPEENAYI 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
             IEKLI+ K++ +        P  E+   A      +     +K   F  RK
Sbjct: 358 RDIEKLIDLKIERVE---DHPFPQTERPMTAAEKQEFEKEKQRRKQEYFASRK 407


>gi|322515347|ref|ZP_08068343.1| ATP-dependent RNA helicase DeaD [Actinobacillus ureae ATCC 25976]
 gi|322118634|gb|EFX90856.1| ATP-dependent RNA helicase DeaD [Actinobacillus ureae ATCC 25976]
          Length = 445

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 139/439 (31%), Positives = 231/439 (52%), Gaps = 11/439 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F +L L+P+++ A+   GY +PT +Q +TIP  L   D+ G A TGTGKTA+F+LP +
Sbjct: 8   ITFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAI 67

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R ++  PR LIL PTRELA QVA+  + + +   L++A + GG+ ++   +  
Sbjct: 68  QNLLDYPRRKLGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEVF 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR++ +          +EIL+ DEADRML MGF    + I +   + + 
Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT+  EL     + + +     ++   S  E  +      +A   +    L   L
Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLK-IDAEPSRRERKKIQQWYYHADNLEHKTKLLARL 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S   M+  I+F  ++++V  L  +L K+G     + G++ Q  R + ++  K+G + ++
Sbjct: 247 ISTMKMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDGVVNVL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI DV +V NFD+P  A+ Y+HR+GRT RAG+ G A +LV   D K +  
Sbjct: 307 VATDVAARGIDIDDVDYVINFDLPYSADTYLHRVGRTARAGKKGSAISLVEAHDYKLLGK 366

Query: 360 IEKLIEK--KVDWLNGDLSSLNPPLE-------KIDIAQHNHARKNNPIPQKSTGFDRRK 410
           I++  E+  K   + G       P +       K + A+    ++      K+    R K
Sbjct: 367 IKRYTEELLKARVIEGLEPRTKAPKDGELNTTTKKEKARIKKRKEAKKEAAKAKVKVRHK 426

Query: 411 KNYSSQKSHIPLKESEKIS 429
              +  K   P  E+ K +
Sbjct: 427 DTKNIGKRRKPASEAAKFA 445


>gi|332293596|ref|YP_004432205.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171682|gb|AEE20937.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 427

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 169/435 (38%), Positives = 250/435 (57%), Gaps = 18/435 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ K IP+VLQ  DV   AQTGTGKTA F LPM+
Sbjct: 1   MSFKSLGLSDALLKAVSEKGYTTPSPIQQKAIPVVLQGKDVLASAQTGTGKTAGFTLPMI 60

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L     + R   R L+L PTRELAAQ+ +N  +Y K  ++   ++ GG+    Q + L
Sbjct: 61  HRLINNPKQGRRKIRALVLTPTRELAAQIQENVLEYSKYVDIKSMVIFGGVNQNPQVRTL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD  N+G L ++++E LV+DEADRMLDMGFI  I+ +  +VP  RQ
Sbjct: 121 RQGVDILVATPGRLLDLQNQGLLSLSDVEFLVLDEADRMLDMGFIHDIKKVLKMVPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT   +++K + + L NP  +E    ++TAE ++                +    
Sbjct: 181 NLLFSATFNTDIKKFASSILTNPVLVEATPENTTAEKVDQKSYRVDKSRK---TEMLIKF 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      ++F   K     L   LEK G S  AIHGN  Q +R+K L+ FK G ++++
Sbjct: 238 IREGNWDQVLVFTRTKHGANRLSQKLEKDGISSAAIHGNKTQNARVKALAGFKSGKVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + +V N+++PN  E+Y+HRIGRTGRAG  G+A +LV  +++ ++  
Sbjct: 298 VATDIAARGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVDYVRG 357

Query: 360 IEKLIEKKV--DWLNG-----DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           IEKL+ +K+  + L G      L+ +     + + A+H   R+N      S     R K+
Sbjct: 358 IEKLLGEKLHSEVLEGFQPTDTLAQIKKEAAE-NKARHQQGRRN------SGNSGGRGKS 410

Query: 413 YSSQKSHIPLKESEK 427
               KS     ++ +
Sbjct: 411 AGGSKSSDSRNKNSR 425


>gi|126632201|gb|AAI33101.1| Ddx46 protein [Danio rerio]
          Length = 1032

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 144/449 (32%), Positives = 231/449 (51%), Gaps = 15/449 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S KV+ A+    Y KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 355 TWVQCGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 414

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               ++       P  +I+ PTRELA Q+    +K+ K+  L V  + GG     Q  +L
Sbjct: 415 HILDQRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGISEQIAEL 474

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     N     +  +  +VIDEADRM DMGF P +  I   V  
Sbjct: 475 KRGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRP 534

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L  P  ++V   S               +  KK   L 
Sbjct: 535 DRQTVMFSATFPRTMEALARRILSKPVEVQVGGRSVVCSD--VEQHVIVIEEEKKFLKLL 592

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L       + IIF +++++   L   L K  +   ++HG IDQ  R  I+++FK G  
Sbjct: 593 EILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGAC 652

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+  PN  E+Y+HR GRTGRA   G A+T + +   ++
Sbjct: 653 RLLVATSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRARNKGYAYTFITEGQARY 712

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E     L+G  SS+   LE++        +    I + S+GF  +   +  +
Sbjct: 713 SGDILKALE-----LSG--SSVPAELEQLWTNFKEQQKAEGKIIKSSSGFSGKGFKF-DE 764

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGF 445
             H    E +K+ K    + ++D +    
Sbjct: 765 TEHALANERKKLQKAALGLHDSDDEDTAL 793


>gi|325928505|ref|ZP_08189695.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118]
 gi|325541118|gb|EGD12670.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118]
          Length = 537

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 142/371 (38%), Positives = 222/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV + GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 11  FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
            +  + +   P+ L+L PTRELA QVA+ F+KY +       L +  G P+  Q   L+R
Sbjct: 71  ADLHQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P  + +   ++T+  I   +      +          ++ 
Sbjct: 188 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEP 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   IIF   K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++VA
Sbjct: 248 FDGM---IIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR+G A   V   +   + +IE
Sbjct: 305 TDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIE 364

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 365 RATRQPIEEMQ 375


>gi|307941598|ref|ZP_07656953.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
 gi|307775206|gb|EFO34412.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
          Length = 436

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 157/416 (37%), Positives = 231/416 (55%), Gaps = 9/416 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LGLS  ++ A+ + GY  PTPIQ   IPL+L+ +D+ G+AQTGTGKTA+F LP+  
Sbjct: 3   EFKSLGLSDTLLKAIEEIGYDTPTPIQKNAIPLILKGNDLLGLAQTGTGKTAAFGLPLAH 62

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               E      +  R LIL PTREL  Q+A N   + +   L V  ++GG+    Q K+L
Sbjct: 63  RLLEEGRTPEPKAARALILAPTRELVNQIASNLTSFIRKTPLRVTSVVGGVSINPQIKRL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD  +R  + +N    LV+DEAD+MLD+GFI  ++ I  LV   RQ
Sbjct: 123 GRGTDILVATPGRLLDLVDRKAVHLNKASYLVLDEADQMLDLGFIHALRRIAGLVAEKRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  +++ ++  +L  P+R+EV     TAE +            K  +     +
Sbjct: 183 TLLFSATMPRQIEDLARTYLHKPERVEVAPAGKTAERVAQSVHFMDQ---KAKSGFLVDM 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      ++FC  K     L   L   G S  +IHGN  Q  R + +   +EGT++++
Sbjct: 240 ICERADDTCLVFCRTKHGAERLMKRLVAAGVSAGSIHGNKSQNQRDRAIKGLREGTLKVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V HV+NF++P  AE Y+HRIGRT RAG  G A +L + E++  +  
Sbjct: 300 VATDVAARGIDIPGVSHVYNFELPEVAEAYVHRIGRTARAGASGDAISLCSAEEVALLRQ 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           IEKL   +++  +G+     P   K+     N      P   K+ G   ++    S
Sbjct: 360 IEKLTGIEIEVASGE----APAPVKLVRKGRNQRSGQRPAQHKARGNGGQRSGEKS 411


>gi|115352406|ref|YP_774245.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115282394|gb|ABI87911.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
          Length = 497

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 165/425 (38%), Positives = 233/425 (54%), Gaps = 10/425 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+  ++ A+ + GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L    +    P        IL PTRELA QVA N   Y K+ +L  A++ GG+    Q 
Sbjct: 72  RLLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQM 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +                +  
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKHGAVVQL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                   +K  ++FCN K     L  +LE+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 L---RDRGLKQVLVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  IEKLI++ ++     L    P   + D        +         G  R +  +   
Sbjct: 369 LADIEKLIKRPLEVQTLALD--KPSRHRHDERGGERGGERAGERSGERGGRRERDEHRGA 426

Query: 417 KSHIP 421
            +   
Sbjct: 427 SARRS 431


>gi|291522717|emb|CBK81010.1| Superfamily II DNA and RNA helicases [Coprococcus catus GD/7]
          Length = 526

 Score =  171 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 140/367 (38%), Positives = 215/367 (58%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+  +++ AV + G+ + TPIQ K IP V+   D+ G AQTGTGKTASF +PML  
Sbjct: 6   FEDLGVDERILRAVTEMGFEEATPIQAKAIPEVMTGQDIIGQAQTGTGKTASFGIPMLQK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    + +  + ++L PTRELA Q AD   K  K  +    L I  G     Q + L+ 
Sbjct: 66  VDP---KNKHVQAIVLCPTRELAIQSADEIRKLAKFMHGIKVLPIYGGQDIVKQIRSLKT 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  VLI TPGR++DH  R  + +++++I+V+DEAD ML+MGF   I+ I S  P  RQTL
Sbjct: 123 GVQVLIGTPGRVMDHMRRHTIKLDDLKIVVLDEADEMLNMGFREDIETILSQTPEERQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   + +++  + +N K ++V     T   IE  +        K    +   L  
Sbjct: 183 LFSATMPQPIMEIARTYQKNAKIVKVVKRELTVANIEQYYYEVRP---KNKEEVLSRLLD 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++FCN K+ V  L   L+ +G+    +HG++ Q+ R ++++ F+ G  +++VA
Sbjct: 240 IYNPALSVVFCNTKRQVDELVEGLKGRGYFAEGLHGDMKQQQRDRVMNGFRNGRTEILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAG++GKAFT +   +   +  I+
Sbjct: 300 TDVAARGIDVDDVDAVFNYDLPQDDEYYVHRIGRTGRAGKNGKAFTFITGREFYKLKDIQ 359

Query: 362 KLIEKKV 368
           +    K+
Sbjct: 360 RYCRTKI 366


>gi|319898057|ref|YP_004136254.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
 gi|317433563|emb|CBY81947.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
          Length = 439

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 144/440 (32%), Positives = 227/440 (51%), Gaps = 9/440 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP + 
Sbjct: 5   QFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++       
Sbjct: 65  HLLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QT
Sbjct: 125 TNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL       L N     V+   S  E  +      +A  ++    L     
Sbjct: 185 LLFSATLEGELLVDFAERLLNDPVK-VDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +  GI+F  ++++V  L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 244 ETEKVTRGIVFVRRREDVRELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           ++  E+  K   L G      PP  K    +    ++   I +K     + +     +  
Sbjct: 364 KRYTEEILKARILAGLEPRTKPP--KDGEVKSVSKKQKARIKEKREDKKKTEAKKKVKLR 421

Query: 419 HIPLKESEKISKLQQDIQEN 438
           H   K+++ I K ++    N
Sbjct: 422 H---KDTKNIGKRRKPSNSN 438


>gi|229000239|ref|ZP_04159808.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock3-17]
 gi|228759571|gb|EEM08548.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock3-17]
          Length = 481

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 140/411 (34%), Positives = 233/411 (56%), Gaps = 16/411 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  LS ++V A+    Y +PT +Q K IP+ L++ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFKEYALSKEIVRALTSLKYEQPTEVQGKVIPVALEKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ LIL PTRELA QV ++    G+   +    + G  PF  Q  +L++
Sbjct: 65  MIEWEENK---PQALILTPTRELAVQVKEDITNIGRFKRIKATAVYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G   +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTDRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++ +S  ++++P  IE+     T + IEH          ++   L Q + +
Sbjct: 182 LFSATLPEDVENLSHTYMKSPTHIEIKASGITTDKIEH---ILLEVREEEKFSLLQDITT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++ G+    IHG + Q  R  ++++FK G  + +VA
Sbjct: 239 LENPDSCIIFCRTQENVDHVFRQLKRSGYPCDKIHGGMIQEDRFAVMNDFKRGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T V   + + +  IE
Sbjct: 299 TDVAARGIDIENITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFVTPYEERFLVEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP----QKSTGFDR 408
           + I  ++  +        P  E++   +     K N  P    +KS G ++
Sbjct: 359 EYIGFEIQKIEA------PSKEELAKGKVAFEDKINAKPIMKKEKSAGLNK 403


>gi|259907666|ref|YP_002648022.1| ATP-dependent RNA helicase SrmB [Erwinia pyrifoliae Ep1/96]
 gi|224963288|emb|CAX54773.1| ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
 gi|283477516|emb|CAY73432.1| ATP-dependent RNA helicase [Erwinia pyrifoliae DSM 12163]
          Length = 442

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 134/439 (30%), Positives = 221/439 (50%), Gaps = 4/439 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ ++ + G+ +PT IQ + IP  L+  DV G A TGTGKTA+++LP + 
Sbjct: 5   TFSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K+ +L +A + GG+ F    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAFMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ T GR+L +          +E L++DEADRMLDMGF   I+ I++   + +QT
Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  E  K     + N     +    +  E  +       A   K    L   L 
Sbjct: 185 LLFSATLEGEAIKDFAERILNEPVE-IEADPARRERKKIQQWYYRADDIKHKTALLLHLL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   ++F  +++ V  +C  L + G +   + G + Q  R + +    +G + ++V
Sbjct: 244 KQPEVTRAVVFVRKRERVHEVCGWLREAGINNSYLEGELVQAKRNEAIKRVVDGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  ++ Y+HRIGRTGRAG+ G A +LV   D   +  I
Sbjct: 304 ATDIAARGIDIDDVSHVINFDMPVTSDTYLHRIGRTGRAGKKGIAISLVEAHDNLLLGKI 363

Query: 361 EKLIEKKVDWLNGDL--SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            + +++ +     D    +   P EK+               +     + + +     ++
Sbjct: 364 IRYVKEPIKARVIDELRPTTRAPSEKLKGKPSKKVLAKRTEQKNKQKAEEKPRVKERHRN 423

Query: 419 HIPLKESEKISKLQQDIQE 437
              + +  + +  + D  E
Sbjct: 424 RKNIGKRRQPASAKTDPAE 442


>gi|206974096|ref|ZP_03235014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217959967|ref|YP_002338523.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|229139159|ref|ZP_04267734.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST26]
 gi|206748252|gb|EDZ59641.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217065592|gb|ACJ79842.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|228644218|gb|EEL00475.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST26]
          Length = 454

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 143/409 (34%), Positives = 231/409 (56%), Gaps = 14/409 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ + IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPECSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLTTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ ++V +   T  TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMVQVQSEEVTVNTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           EK +   +     +     P ++++D    N      P P+KS  + +R
Sbjct: 360 EKTLGAPIQREIIE----QPKIKRVD---ENGKPVPRPAPKKSGEYRQR 401


>gi|123455589|ref|XP_001315537.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121898217|gb|EAY03314.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 598

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 204/380 (53%), Gaps = 4/380 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L L   +   + D  + KPTPIQ  +IP+ L+ HD+ GIA+TG+GKTA+F++P +
Sbjct: 125 LTFEELNLPDTITKTITDNKWEKPTPIQSVSIPVALKGHDLIGIAKTGSGKTAAFLIPAM 184

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +  ++   R   P  L+L PTRELA Q+A+  + +  N  +    L GG     Q   
Sbjct: 185 VHIGLQEPMYRGDGPIVLVLSPTRELAQQIAEVAKGFCDNLMIRQTCLFGGAGRGPQAND 244

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L     +++ TPGR++D    G+  MN +  LV+DEAD+MLDMGF P I+ I   +   R
Sbjct: 245 LRHLPSLVVATPGRLIDFIEGGQCPMNRVNFLVLDEADQMLDMGFEPQIRKIIGHISKDR 304

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT++FSAT   E+Q+++ +FL +P  + +     T  +     +    ++ K    L+  
Sbjct: 305 QTMMFSATWPKEIQQLAADFLVDPVHMIIGNKDLTTNSNIKQVITKCEEFEKLSKCLE-- 362

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + ++      IIF   K+   +L  +L  +GF   ++HG+  Q  R  +L  F+     +
Sbjct: 363 VLNEHKDDKIIIFTKTKRTTDDLQENLNMKGFQAYSLHGDKAQNQRDFVLGKFRSCKKGI 422

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ D+  V N+D P   E Y+HRIGRT R  + G A T    E+     
Sbjct: 423 LVATDVAARGLDVNDIDIVINYDFPGDIETYVHRIGRTARGNKEGLAVTFFTDENKNMSR 482

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + K++ +    L   L +L
Sbjct: 483 KLAKIMTQAKQELPDWLKAL 502


>gi|326795184|ref|YP_004313004.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326545948|gb|ADZ91168.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 619

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 150/399 (37%), Positives = 224/399 (56%), Gaps = 15/399 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL+  ++ AV D GY +P+ IQ ++IP +L+ HD+ G AQTGTGKTA+F LP+L+
Sbjct: 9   TFDSLGLAAPILKAVADLGYEQPSAIQAQSIPYLLEGHDLLGQAQTGTGKTAAFALPLLS 68

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++      +    L+L PTRELA QV++ F+ Y +N      L I  G+ ++ Q ++L 
Sbjct: 69  RIDVTNKSTQ---LLVLAPTRELAIQVSEAFQSYARNIPDFHVLPIYGGMSYDTQLRQLR 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  R  L ++ ++ LV+DEAD ML MGFI  ++ I    P   QT
Sbjct: 126 RGVQVVVGTPGRVMDHIRRKTLKLDGLQALVLDEADEMLRMGFIDDVEWILEHTPDGHQT 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++KV+   L NPK +++ T +STA TI   +      +          + 
Sbjct: 186 ALFSATMPPVIRKVANKHLNNPKEVKILTKTSTATTISQKYWQVSGIHKLDALTRILEMN 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M   IIF   K   V L   L  +G +  A++G+I Q  R + +   K+G I ++V
Sbjct: 246 EHDGM---IIFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVDRIKKGQIDILV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD+  V HV N+D+P   E+Y+HRIGRTGRAGR G A   V   + + +  I
Sbjct: 303 ATDVVARGLDVDRVSHVVNYDIPYDTESYVHRIGRTGRAGRSGTAILFVGHRERRMLQQI 362

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           E+   + ++ +    +S        DI +   AR    I
Sbjct: 363 ERATRQAIERMQLPTAS--------DINEQRVARFKQRI 393


>gi|300721544|ref|YP_003710819.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus
           nematophila ATCC 19061]
 gi|297628036|emb|CBJ88585.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus
           nematophila ATCC 19061]
          Length = 649

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 136/373 (36%), Positives = 223/373 (59%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 7   ISFADLGLSAPILSALGDMGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFTLPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             +    A ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L
Sbjct: 67  HNI---NAELKAPQILVLAPTRELAVQVAEACSDFSKHMRSVNVVALYGGQRYDVQLRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  +++ TPGR+LDH  RG L ++N++ LV+DEAD ML MGFI  ++NI S +P   Q
Sbjct: 124 RQGPQIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+ +P+ + + +  +    I   + + Y     +        
Sbjct: 184 TALFSATMPEAIRRITRRFMNDPQEVRIQSSVTNRPDISQSYWSVYGVRKNEA---LVRF 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K G + ++
Sbjct: 241 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQTLREQTLERLKNGRLDIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 301 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 360

Query: 360 IEKLIEKKVDWLN 372
           IE+ ++  +  + 
Sbjct: 361 IERTMKLTIPEVE 373


>gi|118475108|ref|YP_891966.1| putative ATP-dependent RNA helicase RhlE [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118414334|gb|ABK82754.1| putative ATP-dependent RNA helicase RhlE [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 624

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 155/447 (34%), Positives = 238/447 (53%), Gaps = 14/447 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+D  LS  ++ A+ +  Y  PT IQ   IP ++Q  D+   A+TGTGKTA+F LP+L
Sbjct: 1   MLFSDFDLSSAILEALKELNYDAPTQIQQVAIPAIMQGKDILAGARTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L       + P+T   +L PTRELA QV  N + Y K        + GG+    Q + 
Sbjct: 61  EKLSSKERNKKRPQTRVLVLVPTRELANQVTQNIKSYAKKLPFKTLPVFGGVSSYPQIQA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+++ TPGR+LD   +  L + +I+ LV DEADRM DMGFI  I+ I  ++P  R
Sbjct: 121 LKSGIDIVVATPGRLLDLALQNALSLEHIDTLVFDEADRMFDMGFIHDIKQIVKMLPEKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT   E+  +  + L++P RI++        T  +           K   L   
Sbjct: 181 QNLLFSATYPSEVMSLCNSMLKDPLRIQIEE---QNSTALNIIQRVILVDRDKKMELLNE 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   +++   ++F   K++       L   GFSV A+HG+  Q  R K L  FK G  ++
Sbjct: 238 VFGVESIDQALVFTRTKRSADKCSSYLHTLGFSVAALHGDKSQSVRSKTLEKFKNGKTKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI ++  V N ++PN  E+Y+HRIGRTGRAG  G A +LV  ++ K + 
Sbjct: 298 LVATDIAARGLDIKELPFVINLELPNVPEDYVHRIGRTGRAGNDGVAISLVCVDEFKFLI 357

Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQ--HNHARKNNPIPQKSTGFDRRKKNYS 414
            IEKLI+KK+  +  +G  + L    + I   Q  +  + +++    K    +R+ + ++
Sbjct: 358 DIEKLIDKKLIRESFSGFEADLRVKPQPIRRGQNMNKSSERDDRNGNKIDKKERKPREFN 417

Query: 415 SQKSHIPLKESEKISKLQQDIQENDAD 441
           S K     K+  K  + + D +    D
Sbjct: 418 SDK-----KDESKRGRNRDDFKGEFRD 439


>gi|119946865|ref|YP_944545.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119865469|gb|ABM04946.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 429

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 159/371 (42%), Positives = 234/371 (63%), Gaps = 4/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   ++ AV + GY +P+PIQ + IP +L+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFDLLGLPDSLLKAVKEQGYTEPSPIQAQAIPAILEGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           T+LEKG   +    R L+L PTRELAAQV  +   YGKN  L  A++ GG+    Q + L
Sbjct: 61  TLLEKGNRPKPNQVRALVLTPTRELAAQVHASVATYGKNMPLRSAVVFGGVKINPQMQIL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DVL+ TPGR++D +N+  +    +E+L++DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 RQGVDVLVATPGRLIDLYNQNAVSFKQLEVLILDEADRMLDMGFIHDIKRILAVLPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + +++++++  + NP  I V+  ++TAE +               +++   L
Sbjct: 181 NLLFSATFSPDIRRLAKGLVNNPVEISVSPRNTTAENVTQTVYEVDKTKK---SIVLSTL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  +  ++F   K     L  SLE +G +  AIHGN  Q +R + L+ FKEG ++ +
Sbjct: 238 IKQNDWQQVLVFVKTKHGANRLVKSLEGRGITAAAIHGNKSQAARTRALAGFKEGQVRAL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V NFD+P+ +E+Y+HRIGRTGRAG  G+A +LV  E+ K +  
Sbjct: 298 VATDIAARGIDIDQLPQVVNFDLPHVSEDYVHRIGRTGRAGNEGQALSLVCNEEFKLLKD 357

Query: 360 IEKLIEKKVDW 370
           IEKLI+K +  
Sbjct: 358 IEKLIKKVIPR 368


>gi|120405422|ref|YP_955251.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           vanbaalenii PYR-1]
 gi|119958240|gb|ABM15245.1| ATP-dependent RNA helicase CsdA [Mycobacterium vanbaalenii PYR-1]
          Length = 564

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 150/384 (39%), Positives = 226/384 (58%), Gaps = 8/384 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL + P V+ AV D GY  P+PIQ  TIP +L   DV G+AQTGTGKTA+F +P+L
Sbjct: 13  LTFADLQIHPAVLQAVADVGYETPSPIQAATIPAILDGSDVVGLAQTGTGKTAAFAIPIL 72

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + ++      R  + L+L PTRELA QVA+ F +YG +  + V  + GG  +  Q   L+
Sbjct: 73  SKIDT---DSRNTQALVLAPTRELALQVAEAFGRYGAHLRVNVLPIYGGASYVPQLSGLK 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  +G L +++++ LV+DEAD ML MGF   ++ I +  P  +Q 
Sbjct: 130 RGAQVVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQV 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++K++  +L +P  + V + + TAE I   +                 ++
Sbjct: 190 ALFSATMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYFLVSYPRKMDALTRLLEVE 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M   +      + V     S   +GF+  AI+G+I Q  R + +S  K+GTI ++V
Sbjct: 250 QGDAMIVFVRTKQATEEVAEKLRS---RGFAAAAINGDIPQAVRERTISQLKDGTIDILV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV NFD+P+  E+Y+HRIGRTGRAGR G A   V   +   + AI
Sbjct: 307 ATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLGAI 366

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E++  +K+  +  +L S+    EK
Sbjct: 367 ERVTRQKL--VESELPSVEDVNEK 388


>gi|74695852|sp|Q75EW9|RRP3_ASHGO RecName: Full=ATP-dependent rRNA helicase RRP3
          Length = 487

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 140/426 (32%), Positives = 225/426 (52%), Gaps = 9/426 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L L P+++ A  +  + KPTPIQ K IP  LQ  D+ G+AQTG+GKTA+F +P+L 
Sbjct: 67  SFRELDLVPELIEACDNLNFTKPTPIQSKAIPPALQGKDIIGLAQTGSGKTAAFAIPILN 126

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   +         IL PTRELA Q+ + F+  G    +    ++GG+    Q + L R
Sbjct: 127 RLWHDQQPYY---ACILAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMR 183

Query: 122 GADVLICTPGRILDHFNRGKLLM--NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              ++I TPGR++DH    K        + LV+DEADR+L+M F P +  I   +P   +
Sbjct: 184 KPHIIIATPGRLMDHLEVHKRGFALRKQQFLVMDEADRLLNMKFGPVLDRILKNIPTKVR 243

Query: 180 TLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           T   FSATMT ++ K+    L N  +  V+    T +T+    +           +    
Sbjct: 244 TTYLFSATMTSKIDKLQRASLTNTVKCAVSNKYQTVDTLVQTLIVVPGGLKNTFLIYLL- 302

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             ++   K  I+F   K N   +        FS  A+HG+++Q  R   L  FK G   +
Sbjct: 303 --NEFIGKTTIVFTRTKANAERISGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKKSI 360

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV++ D++ I 
Sbjct: 361 LVATDVAARGLDIPSVDLVINYDIPVDSKSYIHRVGRTARAGRSGKSVSLVSQYDLELIL 420

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IE+++ KK+   N D S +    + +D A      + N   ++     + +++ ++ + 
Sbjct: 421 RIEEVLGKKLPKENVDKSIVLSLRDSVDKANGEVIMELNRRNKEKQTRGKGRRSRTATRE 480

Query: 419 HIPLKE 424
           ++  +E
Sbjct: 481 NMDKEE 486


>gi|114046038|ref|YP_736588.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113887480|gb|ABI41531.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 622

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 138/372 (37%), Positives = 215/372 (57%), Gaps = 8/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ A+ + GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L 
Sbjct: 7   TFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            +        +P+ L+L PTRELA QVA+ F  Y K       L I  G     Q   L+
Sbjct: 67  KVTSQ----AVPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNALK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG L +  ++ LV+DEAD ML MGFI  I+ I    P  RQ 
Sbjct: 123 RGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQRQL 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +++++V+   L++   I +    +T ++IE  FV        +  +    ++
Sbjct: 183 ALFSATMPEQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVE 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + +   IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++
Sbjct: 243 NTEGI---IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +GHV N+D+P   E Y+HRIGRTGRAGR G A   V   +++ +  I
Sbjct: 300 ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTI 359

Query: 361 EKLIEKKVDWLN 372
           E+    ++  + 
Sbjct: 360 ERATNSRISPMK 371


>gi|149375720|ref|ZP_01893489.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
 gi|149360122|gb|EDM48577.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
          Length = 441

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 166/395 (42%), Positives = 237/395 (60%), Gaps = 5/395 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS ++V A  D GY  P+PIQ K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSSLGLSEQLVRATADQGYETPSPIQAKAIPAVLSGRDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +     + PR LIL PTRELAAQV D+   Y +      A++ GG+    Q  KL 
Sbjct: 61  QRLAENPRTGKGPRVLILAPTRELAAQVHDSVALYSRYMPTKSAVVFGGVKINPQMMKLR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVL+ TPGR++D + +  +  N +EILV+DEADRMLDMGFI  I+ I +L+P  RQ 
Sbjct: 121 KGLDVLVATPGRLMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILALLPAKRQN 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT ++E++ ++E  L NP ++EV   ++ AE+I+                      
Sbjct: 181 LLFSATFSNEIRTLAEGLLDNPVQVEVAARNTAAESIKQSVYPVDQSQKTALLSKL---V 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  ++F   K     L   LE+ G +  AIHGN  Q +R + L++FK+G ++++V
Sbjct: 238 RDNGWEQVLVFTRTKHGANRLTQKLERDGITAAAIHGNKSQGARTRALADFKQGEVRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV+ ++ K +  I
Sbjct: 298 ATDIAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADEGKMLAGI 357

Query: 361 EKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHA 393
           E+LI+K++    + G   + N PL+    A  + A
Sbjct: 358 ERLIKKQLPRKSVEGFEPTNNLPLKPKAKADPSRA 392


>gi|330826029|ref|YP_004389332.1| DEAD/DEAH box helicase domain-containing protein [Alicycliphilus
           denitrificans K601]
 gi|329311401|gb|AEB85816.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           K601]
          Length = 568

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 152/374 (40%), Positives = 232/374 (62%), Gaps = 8/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AV + GY  PTPIQ + IP VL  HD+   AQTGTGKTA+F LPML
Sbjct: 1   MTFEELKLAPALLQAVQEQGYQNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML 60

Query: 61  TILEKGR-----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L +G+        R  R L+L PTRELAAQV ++   YGK+ ++   ++ GG+    Q
Sbjct: 61  HRLAQGQAPTSRFGGRGVRALVLTPTRELAAQVEESVRAYGKHLDIKSTVIFGGVGMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++++RG DVL+ TPGR+LD   +G + ++ +EILV+DEADRMLDMGFI  ++ + +L+P
Sbjct: 121 IERIKRGVDVLVATPGRLLDLQQQGFMDLSQVEILVLDEADRMLDMGFIHDVKKVLALLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE+++++   L +P+ I+V   ++T + I            K+    
Sbjct: 181 KAKQSLLFSATFSDEIRELAAGLLNDPQSIQVTPRNTTVQRISQVIHPVGRGKKKQV--- 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              +  Q      ++F   K    N+   L K G    A+HGN  Q +R + L  FK G 
Sbjct: 238 LLHIIQQHDWSQVLVFTRTKFGANNVAEYLTKHGVQAMALHGNKSQSARTQALEGFKSGQ 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ +VA+D+AARG+DI D+ HV N+++PN  E+Y+HRIGRTGRAG+ G+A +LV  ++  
Sbjct: 298 IRALVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGKEGQAVSLVCMDEEG 357

Query: 356 HIDAIEKLIEKKVD 369
            +  IE+  ++++ 
Sbjct: 358 FMMEIERFTKQEIP 371


>gi|229007762|ref|ZP_04165353.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock1-4]
 gi|228753532|gb|EEM02979.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock1-4]
          Length = 481

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 140/411 (34%), Positives = 233/411 (56%), Gaps = 16/411 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  LS ++V A+    Y +PT +Q K IP+ L++ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFKEYALSKEIVRALTSLKYEQPTEVQGKVIPVALEKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ LIL PTRELA QV ++    G+   +    + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALILTPTRELAVQVKEDITNIGRFKRIKATAVYGKSPFVRQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G   +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTDRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++ +S  ++++P  IE+     T + IEH          ++   L Q + +
Sbjct: 182 LFSATLPEDVENLSHTYMKSPTHIEIKASGITTDKIEH---ILLEVREEEKFSLLQDITT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++ G+    IHG + Q  R  ++++FK G  + +VA
Sbjct: 239 LENPDSCIIFCRTQENVDHVFRQLKRSGYPCDKIHGGMIQEDRFAVMNDFKRGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T V   + + +  IE
Sbjct: 299 TDVAARGIDIENITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFVTPYEERFLVEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP----QKSTGFDR 408
           + I  ++  +        P  E++   +     K N  P    +KS G ++
Sbjct: 359 EYIGFEIQKIEA------PSKEELAKGKVAFEDKINAKPIMKKEKSAGLNK 403


>gi|77359936|ref|YP_339511.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874847|emb|CAI86068.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 616

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 149/394 (37%), Positives = 232/394 (58%), Gaps = 15/394 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L LSP ++ AV + GY  P+ IQ + IPL+L+R DV G+AQTGTGKTA+F LP+L
Sbjct: 5   VTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++     V+ P+ L+L PTRELA QVA+ FE+Y K+      L +  G  +  Q   L
Sbjct: 65  NNIDPS---VKQPQILVLTPTRELAIQVAEAFEQYAKHVRGIEVLALYGGQSYSIQLSAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA V++ TPGR++DH NRG +  + ++ LV+DEAD ML MGFI  +++I    P  +Q
Sbjct: 122 RRGAQVIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPREKQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM  ++Q +S  ++ NP+++ ++  +ST  ++E  F       +K      +  
Sbjct: 182 TCLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNASIHKNKAIVRFLEAE 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q     +  I+F   + + V L   LE++GFS   ++G+++Q++R + +   K G + ++
Sbjct: 242 QY----EGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVERLKSGMLNVV 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  +E Y+HRIGRTGRAGR GKA   V   +   +  
Sbjct: 298 IATDVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKN 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           I +         N D++ +  P  KI   +   A
Sbjct: 358 IIRHT-------NSDIAQVELPTAKIVEEKRIEA 384


>gi|209964196|ref|YP_002297111.1| DEAD/DEAH box helicase protein [Rhodospirillum centenum SW]
 gi|209957662|gb|ACI98298.1| DEAD/DEAH box helicase protein [Rhodospirillum centenum SW]
          Length = 528

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 145/388 (37%), Positives = 226/388 (58%), Gaps = 7/388 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F+DLGL P ++ AV + G+  PTPIQ + +P  L   DV   A TGTGKTA+FVLP  
Sbjct: 8   VSFSDLGLLPHLLKAVEELGFTTPTPIQQQALPAALTGRDVVASANTGTGKTAAFVLPSL 67

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                         PR L+L PTRELA+QV ++     K   +    ++GG+P+  Q + 
Sbjct: 68  QRIATTARAEAAWGPRVLVLTPTRELASQVLESVRNLSKFGRIQTGTILGGMPYRQQLEM 127

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R  D+++ TPGR++DH  RG+L ++ +E+LV+DEADRMLDMGF   ++ I +  P  R
Sbjct: 128 LRRRVDLIVATPGRLMDHMERGRLDLSGVEVLVLDEADRMLDMGFREAVEFIAAACPAER 187

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLF+AT+    +++++   ++P RI+V   +     +E  ++       K    L + 
Sbjct: 188 QTLLFTATLDRTAERLAQTLTRDPVRIDVAGKAVVTAQVEQRWLRADGLEHKHR--LLET 245

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   +    GI+F   K +   L  +L ++G     +HG++ QR R +++   ++G I +
Sbjct: 246 LLGGEEFGKGIVFIATKLDADRLADTLSEKGHKAMPLHGDMQQRDRNRVVQWLRDGRINV 305

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI D+ HV NFD+P +AE+Y+HRIGRTGRAG  G +++L  + + + + 
Sbjct: 306 IVATDVAARGIDIADLTHVINFDLPKQAEDYVHRIGRTGRAGASGVSYSLFTRMEWRQVR 365

Query: 359 AIEKLIEKKVD--WLNGDLSSLNPPLEK 384
           AIE    K  D   L G L  +  P  +
Sbjct: 366 AIEAYTNKAADMHVLPG-LEPMPEPERR 392


>gi|311696498|gb|ADP99371.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15]
          Length = 440

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 171/418 (40%), Positives = 245/418 (58%), Gaps = 5/418 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS ++V A  D GY  P+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSSLGLSEQLVRATSDQGYETPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +     + PR LIL PTRELAAQV D+   Y K      A++ GG+    Q  KL 
Sbjct: 61  QRLGENPRTGKGPRALILTPTRELAAQVHDSVNLYSKYIPTKAAVVFGGVKINPQMMKLR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVL+ TPGR++D + +  +  N +EILV+DEADRMLDMGFI  I+ I SL+P  RQ 
Sbjct: 121 KGLDVLVATPGRLMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILSLLPAKRQN 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT ++E++ ++E  L NP ++EV   +++AE I+                      
Sbjct: 181 LLFSATFSNEIRTLAEGLLDNPVQVEVAARNTSAENIKQSVYPVDQSQKTALLSKL---V 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             ++    ++F   K     L   LEK G +  AIHGN  Q +R + L++FK G ++++V
Sbjct: 238 RDNSWDQVLVFTRTKHGANRLTQKLEKDGITAAAIHGNKSQGARTRALADFKAGEVRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV+ ++ K +  I
Sbjct: 298 ATDIAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADEGKMLAGI 357

Query: 361 EKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           E+LI+K++    + G   + N PL+    A  + AR  N     +     + K++ ++
Sbjct: 358 ERLIKKQLPRTEVEGFEPTNNLPLKPKAKADPSRARNRNGNGGGNGRPGGKPKSFGAK 415


>gi|320583801|gb|EFW98014.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Pichia angusta DL-1]
          Length = 396

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 200/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L   ++  +   G+  P+ IQ + I  V+Q  DV   AQ+GTGKTA+F + ML 
Sbjct: 24  SFEEMSLKESLLKGIYAYGFEAPSAIQSRAIAQVIQGRDVIAQAQSGTGKTATFTIGMLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++  +   +    L+L  TRELAAQ+       G    +     +GG       + L +
Sbjct: 84  VVDTSKFETQA---LVLSTTRELAAQIRSVISALGDYMKIRCHACVGGKSVGEDIRALSK 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+LD   R  L + N+++LV+DEAD +L  GF   I  I   +P + Q +
Sbjct: 141 GQHIVSGTPGRVLDMIKRRTLSIRNVKMLVLDEADELLGKGFQDQISEIYQYLPPSTQVV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+   +  ++  F+ +P +I V     T E I   ++    +  K   L       
Sbjct: 201 VVSATLPKAVLSLTNKFMSDPVKILVKRDELTLEGINQYYIQVEKEDWKFDTLCDL--YD 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN KK V  L  SL K  F+V ++HG++ Q  R +++  F+ G  +++++
Sbjct: 259 SLTITQAVIFCNTKKKVDWLSESLRKANFTVSSMHGDMQQDERDRVMDEFRLGNSRVLIS 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENY+HRIGR+GR GR G A   V + ++  +  IE
Sbjct: 319 TDIWARGIDVQQVSLVINYDLPYDKENYVHRIGRSGRFGRKGVAINFVTRNELGDLTEIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    K+D +  DLS +
Sbjct: 379 EFFSIKIDEMPSDLSDV 395


>gi|256376393|ref|YP_003100053.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
 gi|255920696|gb|ACU36207.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
          Length = 561

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 145/394 (36%), Positives = 217/394 (55%), Gaps = 12/394 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL P+++ A+   GY +PTPIQ + I  + +  D+ G A TGTGKTA+F LP+L 
Sbjct: 11  SFADLGLRPELLRALSGLGYEEPTPIQREAIVPLTEGRDLLGQAATGTGKTAAFALPVLE 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R   P  L+L PTRELA QV++   +YG+     V  + GG P   Q + LER
Sbjct: 71  RLAQVEKRGDAPFALVLVPTRELAVQVSEAVHRYGRELGARVLPIYGGQPIGRQLRVLER 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR +DH  RG L + +++++V+DEAD MLDMGF   +  I +  P  RQT+
Sbjct: 131 GVDVVVATPGRAVDHLGRGTLNLEDLQVVVLDEADEMLDMGFAEDLDTILAETPKQRQTV 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   + K++   L  P RI +N   +            Y             +  
Sbjct: 191 LFSATMPPRIDKLARQHLTEPARITINQERAEPGEAPRVRQVAYVVPRAHKPAALGRVLD 250

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I+FC  +  V  L  +L  +G+   ++HG I Q  R ++++  + GT  L+VA
Sbjct: 251 VEAPTAAIVFCRTRDEVDQLTETLNGRGYRAESLHGGISQEQRDRVMARLRNGTADLLVA 310

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N++VP+  E+Y+HRIGR GRAGR G A TL    +   +  IE
Sbjct: 311 TDVAARGLDVEQLTHVVNYNVPSAPESYVHRIGRVGRAGREGVAITLAEPREHGMLKTIE 370

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           ++ ++++             +EK+       AR+
Sbjct: 371 RVTKQRI------------TMEKVPTVADLRARR 392


>gi|302874235|ref|YP_003842868.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307689501|ref|ZP_07631947.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302577092|gb|ADL51104.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
           743B]
          Length = 536

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 140/369 (37%), Positives = 225/369 (60%), Gaps = 5/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L L  +++ A+ D G+ +P+PIQ ++IP+ ++ +D+ G AQTGTGKTA+F   +L 
Sbjct: 6   TFNELNLKDEILKAINDMGFEEPSPIQSESIPVGIEGYDLIGQAQTGTGKTAAFGSIILN 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + +   + R+P+ LIL PTRELA QV +   +  KN  L +  + GG P + Q + L  
Sbjct: 66  NMSE---KRRVPQALILAPTRELAIQVNEELVRIAKNMRLNILPIYGGQPIDRQLRALRN 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR+LDH  R  L    ++ LV+DEAD ML+MGFI  I+ +   +   RQTL
Sbjct: 123 GVDIVVGTPGRVLDHLRRKSLNTEFVKFLVLDEADEMLNMGFIDDIEEVMKSLNEDRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++++S+ ++++  ++     ++   +    +        +  +L +  +  
Sbjct: 183 LFSATMPDAIKRLSKRYMKSDAKLISIEKNTVTASTITQYYYEIKNSDRFESLCR--IID 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D  +  IIFC  KK V  L  S++++G+ V  +HG+++Q  RM  L  FKE  +  +VA
Sbjct: 241 ADEPEAAIIFCKTKKGVDELVSSMQRRGYVVEGMHGDMNQNQRMNTLKKFKESNLDFLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ +V HV N+D+P  AE+Y+HRIGRTGRA + GKA+TLV   +   +  IE
Sbjct: 301 TDVAARGIDVENVTHVINYDLPQDAESYVHRIGRTGRANKEGKAYTLVTPREYIVLKQIE 360

Query: 362 KLIEKKVDW 370
           K  + K+  
Sbjct: 361 KTTKSKIKR 369


>gi|255729496|ref|XP_002549673.1| hypothetical protein CTRG_03970 [Candida tropicalis MYA-3404]
 gi|240132742|gb|EER32299.1| hypothetical protein CTRG_03970 [Candida tropicalis MYA-3404]
          Length = 554

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 128/432 (29%), Positives = 204/432 (47%), Gaps = 9/432 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L  +++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTASF++P L 
Sbjct: 31  SFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQ 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    +V+    LIL PTRELA Q +      GK+  +   +  GG        +L  
Sbjct: 91  LVKPKLNKVQ---ALILVPTRELALQTSQVVRTLGKHLGVQCMVTTGGTSLRDDIVRLHD 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD   R  + ++   + V+DEAD+ML   F   I+ I    P  RQ L
Sbjct: 148 PVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKMLSREFKGIIEQILEFFPANRQAL 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F+                T++           K+       L S
Sbjct: 208 LFSATFPLAVKS----FMDQHLNKPYEINLMDELTLKGISQFYAFVEEKQKLHCLNTLFS 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S    H  + Q++R K+   F++G ++ +V 
Sbjct: 264 KLQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVC 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L++  D   +  IE
Sbjct: 324 SDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYSLYKIE 383

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           + +  ++  +   +       E  D        + + +P+ +     R   Y  Q    P
Sbjct: 384 QELGTEIKPIPATIDKALYVAENADAVPRPF--RIDELPKGNATVHNRGYEYKGQPEVKP 441

Query: 422 LKESEKISKLQQ 433
           ++  +   ++QQ
Sbjct: 442 VENGKSERQVQQ 453


>gi|225457931|ref|XP_002273443.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 732

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 137/460 (29%), Positives = 218/460 (47%), Gaps = 22/460 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  ++ A    GY KPTPIQ   IP+ L   D+CG A TG+GKTA+F LP L 
Sbjct: 126 SFLELNLSRPLLRACEALGYTKPTPIQAACIPIALTGRDICGSAITGSGKTAAFSLPTLE 185

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            L     RV+  R L+L PTRELA QV    EK  +  ++   L++GG      +     
Sbjct: 186 RLLFRPKRVQAIRVLVLTPTRELAVQVHSMMEKLAQFTDIRCCLIVGGLSSKMQETALRS 245

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+      I    N   + + ++ +L++DEADR+L++GF   I+ +  L P  RQT
Sbjct: 246 MPDVVVATPGRMIDHLRNSMSVDLEDLAVLILDEADRLLELGFNAEIRELVRLCPKRRQT 305

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+E+ ++ +  +  P R+  +  +    T+    V            +   L 
Sbjct: 306 MLFSATMTEEVDELVKLSMTKPMRLAADPSTKRPATLTEEVVRIRRMREVNQEAVLLALC 365

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+      IIF   K+    L       GF    +HGN+ Q  R+  L  F++  +  ++
Sbjct: 366 SKTFTAKAIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRLDALELFRKQQVDFLI 425

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V N+  P    +Y+HR+GRT RAGR G A T V   D   + +I
Sbjct: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKSI 485

Query: 361 EKLIEKK-----------------VDWLNGDLSSLNPPLEKIDI---AQHNHARKNNPIP 400
            K    K                 ++ +   ++++     +  I   A+    +  N I 
Sbjct: 486 VKRAGSKLRSRIVAEQSIIKWSHMIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 545

Query: 401 QKSTGFDRRKKN-YSSQKSHIPLKESEKISKLQQDIQEND 439
            K   + R K+  ++++K    + ++ K S  +++   N+
Sbjct: 546 HKDDIYSRPKRTWFATEKEKKSVAKAAKDSLEKENGSGNN 585


>gi|149377730|ref|ZP_01895465.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
 gi|149358015|gb|EDM46502.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
          Length = 503

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 165/469 (35%), Positives = 250/469 (53%), Gaps = 39/469 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL P V+ AV   GY KP+PIQ +TIP +L    + G+AQTGTGKTA+F LP+L
Sbjct: 4   LSFADLGLDPAVLEAVAAVGYEKPSPIQAQTIPALLAGKHLLGVAQTGTGKTAAFALPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + ++     V  P+ L+L PTRELA QVA+ F  Y   +     L I  G  F  Q K L
Sbjct: 64  SRIDAS---VMAPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFFPQIKGL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA V++ TPGR+LDH  +G L +++++ LV+DEAD ML MGFI  ++ I +  P   Q
Sbjct: 121 RRGAQVIVGTPGRMLDHLRKGTLKLDSLKALVLDEADEMLRMGFIDDVEAILAKTPDNCQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  +++KV++ +L++   +++ + + T E I          Y+++       +
Sbjct: 181 RALFSATMPPQIKKVAQTYLRDATEVKIESETRTVERI---SQFVLPVYAERKLDALTRI 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              + +   IIF   K     L   L  +G +V  ++G+++QR R + + + K G   ++
Sbjct: 238 LEVEPVDGTIIFVRTKAETTLLAEKLSARGHAVAPLNGDLNQRQREQTVEDLKRGKKDII 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+P + HV N+DVP   E YIHR+GRTGRAGR GKA  LV   +   +  
Sbjct: 298 VATDVAARGLDVPRITHVINYDVPYDTEAYIHRVGRTGRAGREGKAILLVTPRERSWLRT 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E+                N P+E  ++   N  +K             R++ + SQ   
Sbjct: 358 LERAT--------------NSPMESYELPSPNALKKM------------REEQFESQ--L 389

Query: 420 IPLKESEKISK----LQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
           +   E  K+ K    L +  + ND D     G +  ++     G L  +
Sbjct: 390 LGFAEDGKLGKAMALLDEIAERNDMDIAMVAGALACYLEASQPGSLPLE 438


>gi|37528482|ref|NP_931827.1| ATP-dependent RNA helicase RhlB [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|39931722|sp|Q7MYL2|RHLB_PHOLL RecName: Full=ATP-dependent RNA helicase rhlB
 gi|36787920|emb|CAE17037.1| ATP-dependent RNA helicase RhlB [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 428

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 140/419 (33%), Positives = 218/419 (52%), Gaps = 9/419 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKV+ A+ + G+   TPIQ  T+P  ++  DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVIEALDNKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKTLAFLASAFH 69

Query: 62  ILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L         +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLTHPAAEERQTNQPRALIMAPTRELAVQIYSDAEDLAQATGLKMGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +G + +N ++++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 ILESGVDILIGTTGRLIDYTKQGHINLNAVQVVVLDEADRMYDLGFIKDIRWLFRRMPPV 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + +    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 190 NERMNLLFSATLSYRVRELAFEQMNHAEYIEVEPLQ-KTGHRIREELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G I 
Sbjct: 249 TLLEEEWPDRCIIFANTKHRCEDIWAHLAADGHRVGLLTGDVAQKKRLRILEEFSNGNID 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            AIE  I+  +     +    L  L  P  +      NH R+NN   + +T  + RK++
Sbjct: 369 PAIEDYIQHSIPVSKYNSQALLKDLPAPKRRYRSRSGNHQRRNNLSHRNNTPRNNRKRS 427


>gi|124360402|gb|ABN08415.1| Helicase, C-terminal [Medicago truncatula]
          Length = 499

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 141/418 (33%), Positives = 221/418 (52%), Gaps = 19/418 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D      V+  V  AG+V+PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP + 
Sbjct: 96  SFSDAAFPDYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 155

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA Q+     K+G +  +    + GG+P   Q + L
Sbjct: 156 HVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDL 215

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 216 QKGVEIIIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQ 275

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL +SAT   E+++++  FL NP ++ + +    A      +V    +  K   L  +LL
Sbjct: 276 TLYWSATWPKEVEQLARQFLYNPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKL-VKLL 334

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +IF + KK    +   L   G+   +IHG+  Q  R  +LS FK G   +M
Sbjct: 335 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIM 394

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD+ DV +V N+D P   E+Y+HRIGRTGRAG  G A+T     + +    
Sbjct: 395 TATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKE 454

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           +  ++E+    ++ +L+++               R   P P  S GF  R K++ S +
Sbjct: 455 LISILEEAGQRVSSELAAM--------------GRGAPPPP--SGGFRDRGKSFGSGR 496


>gi|255716462|ref|XP_002554512.1| KLTH0F07106p [Lachancea thermotolerans]
 gi|238935895|emb|CAR24075.1| KLTH0F07106p [Lachancea thermotolerans]
          Length = 525

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 140/425 (32%), Positives = 227/425 (53%), Gaps = 8/425 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L P+++ A  +  Y KPTPIQ + IP  L+  D+ G+AQTG+GKTA+F +P+L 
Sbjct: 106 SFSELNLVPELIEACENLKYSKPTPIQAEAIPPALEGKDIIGLAQTGSGKTAAFAIPILN 165

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   +         +L PTRELA Q+ + F+  G    +    ++GG+    Q + L R
Sbjct: 166 QLWHDQQPYY---ACVLAPTRELAQQIKETFDSLGGAMGVRTTCIVGGMNMIDQARDLMR 222

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH  N     M  ++ LV+DEADR+LDM F P +  I  ++P   +T
Sbjct: 223 KPHIIIATPGRLMDHLENTKGFSMRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQGRT 282

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSATMT ++ K+    L NP +  V+T   T +T+    +           +     
Sbjct: 283 TYLFSATMTSKIDKLQRASLTNPVKCAVSTKYQTVDTLIQTLMVVPGGLKNTFLIYLL-- 340

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   K  I+F   K N   +        FS  A+HG+++Q  R   L  FK G   ++
Sbjct: 341 -NEFLGKTAIVFTRTKANAERIATLCNLLEFSATALHGDLNQNQRTGALDLFKAGRRSIL 399

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV++ D++ I  
Sbjct: 400 VATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 459

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE ++ +K+   N D   +    + +D A      + N   ++     + +++    + +
Sbjct: 460 IEDVLGRKLPKENVDKGVILSLRDTVDKANGEVVMELNRRNKEKVARGKGRRSRMHSREN 519

Query: 420 IPLKE 424
           +  +E
Sbjct: 520 MDKEE 524


>gi|209694846|ref|YP_002262774.1| putative helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida
           LFI1238]
 gi|208008797|emb|CAQ78997.1| putative helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida
           LFI1238]
          Length = 434

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 165/444 (37%), Positives = 251/444 (56%), Gaps = 16/444 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  GL+P+VV A+ + GY K TPIQ K IPL  + HD+   AQTGTGKTA+F LP++
Sbjct: 1   MSFSSQGLAPEVVKALTECGYQKLTPIQQKAIPLARKGHDILANAQTGTGKTAAFALPVI 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L   +           IL PTRELA Q+A N   Y K  +L V  + GG    +Q + 
Sbjct: 61  QRLLDTKKSATRRSARALILAPTRELAEQIAVNIISYTKYTSLKVTAVFGGKKMSSQERA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+L+ TPGR+ +H   G + + N+E LV DEADRMLDMGF+  I+NI   V    
Sbjct: 121 LDPGVDILVATPGRLQEHIEEGNVSIANLEFLVFDEADRMLDMGFVNAIRNIMMEVNSAP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT + ++ K++ + L+ PKRI V+  + TA TI H     Y    ++   L   
Sbjct: 181 QIMLFSATSSAQMNKLASDILRKPKRISVDRENMTATTISH---VVYPVDEERKTELLSE 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +   +  ++F N K+   N+   L+  G      HG+  Q +R + L  FKEG  ++
Sbjct: 238 LIGRKNWQQVLVFVNYKETANNIVKELKLDGIKAVICHGDKAQSARRRALEEFKEGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+   + 
Sbjct: 298 MVATDVAARGLDIADLPHVINYDMPFLAEDYVHRIGRTGRAGKKGHAISFVSREEELTVV 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +E LI++++  +        P  E    ++ ++  K N    K+   DR+ +  ++  +
Sbjct: 358 QVETLIQQRIHRVE------QPGYEP--KSRESYIEKVN---TKAGFKDRKGRTNNATNA 406

Query: 419 HIPLKESEKISKLQQDIQENDADS 442
           +     +E+  +L+  IQ+    +
Sbjct: 407 NQDQSSAERRMRLKNAIQKKAGIT 430


>gi|84387538|ref|ZP_00990556.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01]
 gi|84377586|gb|EAP94451.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01]
          Length = 531

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 178/458 (38%), Positives = 264/458 (57%), Gaps = 17/458 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+   GY KP+PIQ K +P VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R    R L+L PTRELAAQV  +  KYG N  LT  ++ GG+    Q +KL
Sbjct: 61  EMLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G+DVL+ TPGR+LD +N+  +  + +EILV+DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 121 RKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +D+++ +++  + NP  I V+  +STA T+     + Y    KK + +   L
Sbjct: 181 NLLFSATFSDDIRGLAKGLVNNPVEISVSPANSTAPTV---EQSIYPVDKKKKSAMLAKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  ++F   K     L H L++QG S   IHGN  Q +R K L NFK G ++++
Sbjct: 238 IKDNDWRQVLVFSKTKHGANKLSHFLDEQGISAAPIHGNKSQGARTKALENFKTGKVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NFD+PN +E+Y+HRIGRTGRAG  GKA +LV  +++  +  
Sbjct: 298 VATDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFG 357

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKID-----------IAQHNHARKNNPIPQKSTGF 406
           IE+LI++ ++   L G       P  ++D             +H+  +++    +     
Sbjct: 358 IERLIQQVLERRELEGFAPVNKLPESRLDSRPIKPKKPKKTREHSDGQRSGENARGHKPA 417

Query: 407 DRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLG 444
            + K++ S   S    K +        +  ++++   G
Sbjct: 418 GKNKRHVSGSGSAPKRKPNANKPNSGNNGSDSNSTVAG 455


>gi|330448082|ref|ZP_08311730.1| csdA, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492273|dbj|GAA06227.1| csdA, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 627

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 142/397 (35%), Positives = 221/397 (55%), Gaps = 7/397 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L L+  ++ A+ + G+V PTPIQ  +IPL+L   D  G AQTGTGKTA+F LP+L 
Sbjct: 7   EFRQLDLADTLLSALDNMGFVAPTPIQAASIPLLLTGVDALGKAQTGTGKTAAFSLPVLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKLE 120
            +   + +   P+ +++ PTRELA QVA   +  G+N      L I G      Q + L+
Sbjct: 67  KVNLSQHK---PQAIVMAPTRELAIQVAAEMKTLGQNIKGLKVLEIYGGASIVDQMRALK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ D  +R +L ++ +   V+DEAD ML MGF+  +  I    P + Q 
Sbjct: 124 NGAHIVVGTPGRVKDLISRKQLHLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPESAQR 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++++ + FL+NP+RI+V   + T   +E  F         +        +
Sbjct: 184 VLFSATMPPIVKEIVDRFLRNPERIDVAGENRTVSKVEQQFWVVKGVEKDEAMSRLLETE 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D     I+F   +++   L   L  +GF   A+HG+I Q  R + + + K G I ++V
Sbjct: 244 DTD---ASIVFVRTRQDTERLADWLCSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  I
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRTGKAILLVRTNQIRMLRTI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           E++ + +++ +   L  L        + +   A+K  
Sbjct: 361 ERVTKSRMEEIQLPLRDLVAAARLSRLGEELQAQKEQ 397


>gi|311104225|ref|YP_003977078.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
 gi|310758914|gb|ADP14363.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
          Length = 493

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 155/381 (40%), Positives = 226/381 (59%), Gaps = 8/381 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL P ++ ++ + GY  PTPIQ + IP+V++  DV G AQTGTGKTA+F LP+L 
Sbjct: 18  TFTDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILH 77

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QV ++ ++Y K   L  A++ GG+    Q 
Sbjct: 78  RLMPLANTSASPARHPVRALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQK 137

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L RG +VL+ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF+P ++ I  L+P 
Sbjct: 138 EALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPA 197

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT ++E++K+  ++L +P  IEV   ++TA TI        +   +   +  
Sbjct: 198 QRQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATANTITQIAYKMPSDAKRAAVVHL 257

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                   +   I+F N K     L   LE+ G    +IHG+  Q  RMK L  FK G +
Sbjct: 258 ---VKSRGLNQVIVFSNTKIGTARLARDLERDGVKAESIHGDKTQADRMKALEAFKAGEL 314

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLD+  V  V N+D+P  AE+Y+HRIGRTGRAG  G+A  L   ++ + 
Sbjct: 315 EVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPDEERF 374

Query: 357 IDAIEKLIEKKVDWLNGDLSS 377
           +  IEKLI+++V     D+ +
Sbjct: 375 LLDIEKLIKREVPRGTLDVPA 395


>gi|332521202|ref|ZP_08397660.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332043295|gb|EGI79492.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 411

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 153/403 (37%), Positives = 235/403 (58%), Gaps = 10/403 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L+  ++ A+ + GY  PT IQ +TIPLVL + DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFKDLKLNRPLLRAIAEKGYDNPTLIQERTIPLVLNKKDVIASAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L   +   +  + +   I+ PTRELA Q+ +NF+ Y    NL   ++ GG   E Q  
Sbjct: 61  QLLYDKQDAAKNQKKVRALIISPTRELAIQIQENFQDYLIYTNLRSTVIFGGASIEPQKD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +G D+LI TPGR+LD   + ++ ++ +E LV+DEAD MLDMGFI  ++ I  L P  
Sbjct: 121 VLRKGVDILIATPGRLLDLHKQDEVNLDYVETLVLDEADLMLDMGFIDDVKKIERLCPAE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +Q LLFSATM  +++++++  L NPKR+EV+  SST+  I             +  L   
Sbjct: 181 KQILLFSATMPYKVEQLAKTILNNPKRVEVSQNSSTSTNINQALYYVPKPKKIELCLHLL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               +  +   IIF   K  V  L  +L +  +   +IHG+  Q  R + L+ FK+  + 
Sbjct: 241 RNTVKGKI---IIFRRTKYGVDKLEKTLLRNNYKADSIHGDKSQTLRQEALNRFKKNEVN 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARG+DI +V  V NFD+PN  E Y+HRIGRTGRAG  G A++  + ++ ++I
Sbjct: 298 ILIATDVAARGIDIENVDAVINFDMPNVPETYVHRIGRTGRAGNTGMAYSFCSADEKEYI 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPP----LEKIDIAQHNHARKN 396
             I++LI  ++D +      L+P     + K   +++   RK+
Sbjct: 358 KTIQQLINLQLDIVEDHPYPLDPKAKPQVHKKQGSKYKKGRKS 400


>gi|78048530|ref|YP_364705.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036960|emb|CAJ24661.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 648

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 142/371 (38%), Positives = 222/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV + GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 27  FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
            +  + +   P+ L+L PTRELA QVA+ F+KY +       L +  G P+  Q   L+R
Sbjct: 87  ADLHQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 144 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPAQRQVA 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P  + +   ++T+  I   +      +          ++ 
Sbjct: 204 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEP 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   IIF   K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++VA
Sbjct: 264 FDGM---IIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVA 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR+G A   V   +   + +IE
Sbjct: 321 TDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIE 380

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 381 RATRQPIEEMQ 391


>gi|229136279|ref|ZP_04265026.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST196]
 gi|228647151|gb|EEL03239.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST196]
          Length = 481

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 141/411 (34%), Positives = 237/411 (57%), Gaps = 14/411 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFTDYALSKEIVRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L ++ ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLDCLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  +++K+S  ++ +P  IE+     T + IEH     +    ++   L + + +
Sbjct: 182 LFSATLPKDVEKLSRTYMDSPTHIEIKATGITTDKIEH---TLFEMREEEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVFQQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG +GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK--NNPIPQKSTGFDRRK 410
           + I  ++        +L P  E++   +     K    PI +K    D  K
Sbjct: 359 EYIGFEIP------KALAPSKEEVMKGKAVFEEKIHAKPIIKKDKNADLNK 403


>gi|189207078|ref|XP_001939873.1| ATP-dependent RNA helicase fal1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|330936277|ref|XP_003305321.1| hypothetical protein PTT_18129 [Pyrenophora teres f. teres 0-1]
 gi|187975966|gb|EDU42592.1| ATP-dependent RNA helicase fal1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|311317725|gb|EFQ86604.1| hypothetical protein PTT_18129 [Pyrenophora teres f. teres 0-1]
          Length = 399

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 205/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   GY  P+ +Q + I  V +  D    AQ+GTGKTA+F + +L 
Sbjct: 26  TFEAMHLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 86  VIDTA---VRETQALVLSPTRELATQIQSVIMGLGDYMNVQCHACIGGTNVGEDIRKLDY 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 143 GQHVVSGTPGRVADMIRRRNLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++ +++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 203 VVSATLPYDVLEMTTKFMTDPVRILVKRDELTLEGLKQYFIAIEKEEWKFDTLCDL--YD 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG++ QR R  I+ +F++   +++++
Sbjct: 261 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQRERDSIMQDFRQANSRVLIS 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V ++D++ +  IE
Sbjct: 321 TDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTQDDVRILRDIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 381 LYYSTQIDEMPMNVADL 397


>gi|88705999|ref|ZP_01103707.1| ATP-dependent RNA helicase RhlE [Congregibacter litoralis KT71]
 gi|88699713|gb|EAQ96824.1| ATP-dependent RNA helicase RhlE [Congregibacter litoralis KT71]
          Length = 443

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 162/399 (40%), Positives = 237/399 (59%), Gaps = 5/399 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS +++ AV   GY K TPIQ K IPLVL+  D+   AQTGTGKTA F LPML
Sbjct: 1   MLFKDLSLSAELLRAVEKQGYDKATPIQQKAIPLVLEGSDLLAGAQTGTGKTAGFTLPML 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                +        P+ L+L PTRELAAQV ++   YG       A++ GG+    Q +K
Sbjct: 61  QRLQNKYPGTAKSYPKALVLTPTRELAAQVHESVRDYGAYLPFKSAVIFGGVSINPQKQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DV++ TPGR+LDH  +  + ++ IEILV+DEADRMLDMGFI  I+ +  ++P  R
Sbjct: 121 LIKGVDVVVATPGRLLDHVQQRSIDLSKIEILVLDEADRMLDMGFIHDIRRVMKVIPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT ++E++K++  FL+NP++I+V   ++  + +            ++       
Sbjct: 181 QTLLFSATFSNEIKKLASEFLENPQQIQVTPQNTATKLVSQRVYPVDKGRKREL---LSQ 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  +IF   K     L   L K G S  AIHGN  Q +R + L+ FK G I+ 
Sbjct: 238 QIGEGNWQQVLIFTRTKHGANRLAEQLSKDGISSAAIHGNKSQGARTRALAEFKSGAIRA 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV N+++PN AE+YIHRIGRT RAG+ G A +LV  +++K + 
Sbjct: 298 LVATDIAARGIDIDKLPHVVNYELPNVAEDYIHRIGRTARAGQEGHAISLVCVDELKLLR 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
            IEKL+   ++ +      ++P ++   I      R+N+
Sbjct: 358 DIEKLLGSAIEKVYLPGFEIDPSIKAEPIQNGRGGRQNS 396


>gi|67920440|ref|ZP_00513960.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Crocosphaera watsonii WH 8501]
 gi|67857924|gb|EAM53163.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Crocosphaera watsonii WH 8501]
          Length = 480

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 142/369 (38%), Positives = 219/369 (59%), Gaps = 5/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS   V  +   G+  PT IQ K IPL+L+ +D+ G +QTGTGKTA++ LP+L
Sbjct: 3   ISFENLGLSDARVNKLQRLGFESPTEIQEKAIPLILESNDILGQSQTGTGKTAAYSLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LIL PTRELA QVA+  + +     L +  + GG   E Q + LE
Sbjct: 63  EQIDTKNPNVQT---LILTPTRELAQQVAEALKDFSTERRLYILTVYGGQSIERQIRSLE 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++D   R KL+++ +   V+DEAD ML MGFI  ++ I    P TR T
Sbjct: 120 RGVQIVVGTPGRVIDLLERKKLVLDCLRWAVLDEADEMLSMGFIDDVKTILRKTPETRNT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM  E++ +   FL++P  + V    +    I+         +SK+ A   Q + 
Sbjct: 180 ACFSATMPREIRDLVNQFLKSPVTVSVERKQAAPTHIDQHLYYVPRGWSKRKA--LQPIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  ++ IIF   K+    L   L++ G SV   HGN+ Q  R +++  F++G I+L+V
Sbjct: 238 EMEDPESAIIFVRTKQTASELTTRLQEIGHSVDEYHGNLSQSQRERLVYRFRDGKIKLVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++ HV N+D+P+ +E YIHRIGRTGRAG+ G A +L+   D + +  I
Sbjct: 298 ATDIAARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLIEPVDRRMVRQI 357

Query: 361 EKLIEKKVD 369
           E+ + +K++
Sbjct: 358 ERKLRQKLE 366


>gi|269104706|ref|ZP_06157402.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161346|gb|EEZ39843.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 647

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 143/397 (36%), Positives = 220/397 (55%), Gaps = 7/397 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L L+  ++ A+   G+V PTPIQ  +IPL+L   D  G AQTGTGKTA+F LP+L 
Sbjct: 7   EFRQLELADTLLSALDKMGFVAPTPIQAASIPLLLTGTDALGKAQTGTGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKLE 120
            L+  + +   P+ +++ PTRELA QVA   +  G+N      L I G      Q + L+
Sbjct: 67  KLKLSQHK---PQAIVMAPTRELAIQVAAEVKTLGQNIQGLKVLEIYGGASIVDQMRALK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ D   R +L ++ +   V+DEAD ML MGF+  +  I    P T Q 
Sbjct: 124 NGAHIVVGTPGRVKDLITRDRLHLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQR 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++++ + FL+NP RI+V   + T   ++  F         +  +     +
Sbjct: 184 VLFSATMPPIVKEIVDRFLRNPARIDVAGENRTVAKVDQQFWVVKGVEKDEAMMRLLETE 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D     I+F   +++   L   L  +GF   A+HG+I Q  R + + + K G I ++V
Sbjct: 244 DTD---ASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVEHIKRGVIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  I
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGREGKAILLVRTNQIRMLRTI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           E++ + +++ +   L           +A+   A+K  
Sbjct: 361 ERVTKSRMEEIQLPLRDAVAEARLNRLAKELEAQKEQ 397


>gi|240128393|ref|ZP_04741054.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268686791|ref|ZP_06153653.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|268627075|gb|EEZ59475.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 462

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 152/426 (35%), Positives = 227/426 (53%), Gaps = 17/426 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QRLTKRSEKPGKGPRALVLAPTRELAAQVEKNALAYAKNMRWFRTVSIVGGTSFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR+ D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    ++ + IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L++ ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK I +K+  L             I+  +    RK+     K  G    +K+   +  
Sbjct: 360 KIEKYINRKLPEL------------TIEGMESTRKRKSASGKPKGKGGWGDRKSGGRRGD 407

Query: 419 HIPLKE 424
           H P KE
Sbjct: 408 HKPGKE 413


>gi|225390528|ref|ZP_03760252.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme
           DSM 15981]
 gi|225043410|gb|EEG53656.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme
           DSM 15981]
          Length = 595

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 136/384 (35%), Positives = 222/384 (57%), Gaps = 9/384 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L  +++ AV + G+ + +PIQ + IP+ ++  D+ G AQTGTGKTA+F +P+L
Sbjct: 31  MKFDTLQLDERILRAVTEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIPLL 90

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++    +V+  + ++L PTRELA QVA+   + GK  +    L I  G     Q + L
Sbjct: 91  QKVDP---KVKKLQAIVLLPTRELAIQVAEEVRRLGKFMHGIKVLPIYGGQDIVKQIRSL 147

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  V+I TPGR++DH  R  + ++ +  +V+DEAD ML+MGF+  ++ I S +P  RQ
Sbjct: 148 KDGTQVIIGTPGRVMDHMRRKTVKLDYVNTVVLDEADEMLNMGFLEDMETILSQLPEERQ 207

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSATM   + +++  F + P  + V     T   +   +     +   +        
Sbjct: 208 TLMFSATMPPAIAEIARKFQKEPVTVRVVKKELTVPKVTQYYYEVKPKNKVEVMCRLL-- 265

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  I+FCN KK V  L  +L+ +G+    +HG++ Q  R +++++F+ G   ++
Sbjct: 266 -DLYAPKLSIVFCNTKKQVDELVQALQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDIL 324

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR GKAF+LV   ++  +  
Sbjct: 325 VATDVAARGIDVGDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVVGREVYKLRD 384

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE 383
           I++  + ++  +   + SLN   E
Sbjct: 385 IQRYCKTRI--IPQAIPSLNDITE 406


>gi|39995599|ref|NP_951550.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
 gi|39982362|gb|AAR33823.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
 gi|298504618|gb|ADI83341.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens KN400]
          Length = 450

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 157/437 (35%), Positives = 250/437 (57%), Gaps = 15/437 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M FA+L L+P ++ AV   GY +PTP+Q   +P  L+  D+   AQTGTGKTA+FVLP +
Sbjct: 1   MTFAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +    +   R PR L+L PTRELA QV D    YG    +    ++GG+P+ AQ + L
Sbjct: 61  QRLSSPPQGPGRGPRVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLRLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D ++ TPGR++D  +R  L ++ +E+LV+DEADRMLDMGF   +  I +  P TRQ
Sbjct: 121 SAPVDFIVATPGRLVDLLDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPATRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLF+ATM   + +++   L+ P+RI++    +T E IE         + K    L + L
Sbjct: 181 TLLFTATMDSAMARLAGRLLREPERIDIAGTKTTHEHIEQRLHVADDLHHKNR--LLRHL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + ++++  IIF   K++  NL   L+ QG S  A+HG++ Q +R + ++  K+G I+L+
Sbjct: 239 ITDESLRRAIIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRLL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV NFD+P  AE+Y+HRIGRTGRAG  G A +  +  ++ ++  
Sbjct: 299 VATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYLAR 358

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDI------------AQHNHARKNNPIPQKSTGFD 407
           IE+ I + +   +      + PL ++              A+   + + +      +G  
Sbjct: 359 IERYIGQTLPEHHIPGLEPSRPLRRVSAGSGRKPGMGAGPARKGSSNRPSGAAPGRSGKS 418

Query: 408 RRKKNYSSQKSHIPLKE 424
             + ++ S++S  P+ E
Sbjct: 419 SDRTSWGSRRSKDPVVE 435


>gi|113971754|ref|YP_735547.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113886438|gb|ABI40490.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 622

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 138/372 (37%), Positives = 215/372 (57%), Gaps = 8/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ A+ + GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L 
Sbjct: 7   TFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            +        +P+ L+L PTRELA QVA+ F  Y K       L I  G     Q   L+
Sbjct: 67  KVTSQ----AVPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNALK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG L +  ++ LV+DEAD ML MGFI  I+ I    P  RQ 
Sbjct: 123 RGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQRQL 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +++++V+   L++   I +    +T ++IE  FV        +  +    ++
Sbjct: 183 ALFSATMPEQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVE 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + +   IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++
Sbjct: 243 NTEGI---IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +GHV N+D+P   E Y+HRIGRTGRAGR G A   V   +++ +  I
Sbjct: 300 ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTI 359

Query: 361 EKLIEKKVDWLN 372
           E+    ++  + 
Sbjct: 360 ERATNSRISPMK 371


>gi|154252927|ref|YP_001413751.1| DEAD/DEAH box helicase domain-containing protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154156877|gb|ABS64094.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 448

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 156/444 (35%), Positives = 243/444 (54%), Gaps = 15/444 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLG++  +  A+    Y  PTPIQ + IP +L+  D+ G+AQTGTGKTA+F LP+L
Sbjct: 4   VTFADLGVAEPLCRALAANNYTNPTPIQAQAIPALLEGRDLLGLAQTGTGKTAAFALPIL 63

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            IL     + +       IL PTRELA Q++ + E YGKN+ L   ++ GG+    Q K 
Sbjct: 64  QILAAANEKRQPKEARALILAPTRELAVQISQSIESYGKNFKLRHTVIFGGVNQFRQVKA 123

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +  G D+++ TPGR+LD  N+  + ++   +LV+DEADRMLDMGFI  ++ I + +P  R
Sbjct: 124 MTAGVDIVVATPGRLLDLMNQKHVNLSRTSLLVLDEADRMLDMGFIRDVRKIIAAMPRQR 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+LLFSATM   +Q +++  L+ P R+EV     T + I            K+   L   
Sbjct: 184 QSLLFSATMPSSIQHLADEILREPVRVEVTPEVVTVDKI---DQRVLHVDGKRKRELLAK 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L     +   I+F   K     +   L+K G    AIHGN  Q +R + L  F+ G  ++
Sbjct: 241 LLDNSELSRVIVFTRTKHCANRVSEQLDKSGVLSEAIHGNKSQGARQRALDMFRNGKARV 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+ HV N+++PN  E+Y+HRIGRT RAG+ G A +     +  H+ 
Sbjct: 301 LVATDIAARGIDVSDITHVINYELPNEPESYVHRIGRTARAGKSGIALSFCDASERSHLR 360

Query: 359 AIEKLIEKKV------DWLNGDLS-SLNPPLEKIDIAQHNHARKN---NPIPQKSTGFDR 408
           +IEKL ++ +      +WL   ++     P+ K    ++    +N   N  P K   F  
Sbjct: 361 SIEKLTKRPLTVMDTTEWLGEQVAVPAGEPMAKRAGNRNGGGPRNGNSNRQPGKPRRFGG 420

Query: 409 RKKNYSSQKSHIPLKESEKISKLQ 432
           +    +  +   P ++  + S+ Q
Sbjct: 421 KPGGGAGNRGQKPGQKGGQQSRRQ 444


>gi|327302680|ref|XP_003236032.1| ATP-dependent RNA helicase DBP2 [Trichophyton rubrum CBS 118892]
 gi|326461374|gb|EGD86827.1| ATP-dependent RNA helicase DBP2 [Trichophyton rubrum CBS 118892]
          Length = 538

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 133/380 (35%), Positives = 216/380 (56%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ KPTPIQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 123 TFDEAGFPQYVMSEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 182

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 183 HINAQPLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQIRDL 242

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 243 TRGVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQ 302

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T ++SAT   ++++++ +FLQ+  ++ + +   +A       V   +++ K+  +++ L 
Sbjct: 303 TCMWSATWPKDVRQLANDFLQDYIQVYIGSQDLSANHRITQIVEVVSEFEKRDRMIKHLE 362

Query: 240 QSQDTMKNGIIFCNQKKNV-VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +  K+ ++     K V  ++   L + G+   +IHG+  Q  R  +L+ FK G   +
Sbjct: 363 RIMEDKKSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPI 422

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ D+ HV N D PN +E+Y+HRIGRTGRAG +G A TL   E+ K   
Sbjct: 423 MVATDVASRGIDVRDITHVLNHDYPNNSEDYVHRIGRTGRAGANGTAITLFTTENAKQAR 482

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + K++ +    ++  L+ +
Sbjct: 483 DLVKILTESKQQIDPRLAEM 502


>gi|332525460|ref|ZP_08401618.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus
           JA2]
 gi|332108727|gb|EGJ09951.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus
           JA2]
          Length = 483

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 170/380 (44%), Positives = 235/380 (61%), Gaps = 8/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L PK++ AV DAGY   TPIQ K IP+VL   DV G AQTGTGKTA+F +P+L  
Sbjct: 19  FDTLALDPKLLRAVADAGYRAMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAAFTIPLLQK 78

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + +       P        +L PTRELA QVA N + Y K+  L  A++ GG+  + Q  
Sbjct: 79  MLRHENTSMSPARHPVRALVLAPTRELADQVAANVKTYAKHTRLRSAVVFGGVDMKPQTA 138

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L+ G +VLI TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P T
Sbjct: 139 ELKAGVEVLIATPGRLLDHIEARNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSFLPKT 198

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E+++++ ++LQ+P  +EV  P++TA T+       Y           +
Sbjct: 199 RQTLLFSATFSPEIKRLAGSYLQDPVTVEVARPNATASTV---EQRFYGVGDDDKRATVR 255

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q  +   I+F N K     L  S E+ G    A+HG+  Q  R+K L+ FK G + 
Sbjct: 256 QILRQRELSQAIVFVNSKLGAARLARSFERDGLKTQALHGDKSQDERLKALAAFKAGEVD 315

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+D+AARGLDI D+  VFNFDVP  AE+Y+HRIGRTGRAG  G A TLV ++D + I
Sbjct: 316 LLVATDVAARGLDIADLPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVTRDDTRLI 375

Query: 358 DAIEKLIEKKVDWLNGDLSS 377
             IEKLI+KK++    ++  
Sbjct: 376 GDIEKLIKKKIEIEPFEIED 395


>gi|294665477|ref|ZP_06730761.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292604731|gb|EFF48098.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 648

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 142/371 (38%), Positives = 222/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV + GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 27  FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
            +  + +   P+ L+L PTRELA QVA+ F+KY +       L +  G P+  Q   L+R
Sbjct: 87  ADLNQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 144 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVA 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P  + +   ++T+  I   +      +          ++ 
Sbjct: 204 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEP 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   IIF   K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++VA
Sbjct: 264 FDGM---IIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVA 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR+G A   V   +   + +IE
Sbjct: 321 TDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIE 380

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 381 RATRQPIEEMQ 391


>gi|294625117|ref|ZP_06703762.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292600581|gb|EFF44673.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 648

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 142/371 (38%), Positives = 222/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV + GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 27  FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
            +  + +   P+ L+L PTRELA QVA+ F+KY +       L +  G P+  Q   L+R
Sbjct: 87  ADLNQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 144 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVA 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P  + +   ++T+  I   +      +          ++ 
Sbjct: 204 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEP 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   IIF   K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++VA
Sbjct: 264 FDGM---IIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVA 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR+G A   V   +   + +IE
Sbjct: 321 TDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIE 380

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 381 RATRQPIEEMQ 391


>gi|254247597|ref|ZP_04940918.1| Helicase [Burkholderia cenocepacia PC184]
 gi|124872373|gb|EAY64089.1| Helicase [Burkholderia cenocepacia PC184]
          Length = 521

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 163/373 (43%), Positives = 225/373 (60%), Gaps = 8/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+P ++ A+++ GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 35  TFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 94

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q+
Sbjct: 95  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQS 154

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 155 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 214

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +            +   +  
Sbjct: 215 ERQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQL 274

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                   +K  I+FCN K     L  +LE+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 275 L---RDRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEI 331

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 332 EALVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 391

Query: 357 IDAIEKLIEKKVD 369
           +  IEKLI++ +D
Sbjct: 392 LADIEKLIKRPLD 404


>gi|21243540|ref|NP_643122.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109105|gb|AAM37658.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 632

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 142/371 (38%), Positives = 222/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV + GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 11  FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
            +  + +   P+ L+L PTRELA QVA+ F+KY +       L +  G P+  Q   L+R
Sbjct: 71  ADLNQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P  + +   ++T+  I   +      +          ++ 
Sbjct: 188 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEP 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   IIF   K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++VA
Sbjct: 248 FDGM---IIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR+G A   V   +   + +IE
Sbjct: 305 TDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIE 364

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 365 RATRQPIEEMQ 375


>gi|107023254|ref|YP_621581.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
 gi|116690337|ref|YP_835960.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|170733675|ref|YP_001765622.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|105893443|gb|ABF76608.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
           1054]
 gi|116648426|gb|ABK09067.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           HI2424]
 gi|169816917|gb|ACA91500.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 520

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 163/373 (43%), Positives = 225/373 (60%), Gaps = 8/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+P ++ A+++ GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 34  TFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q+
Sbjct: 94  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQS 153

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 154 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 213

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +            +   +  
Sbjct: 214 ERQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQL 273

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                   +K  I+FCN K     L  +LE+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 274 L---RDRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEI 330

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 331 EALVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 390

Query: 357 IDAIEKLIEKKVD 369
           +  IEKLI++ +D
Sbjct: 391 LADIEKLIKRPLD 403


>gi|332285792|ref|YP_004417703.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
 gi|330429745|gb|AEC21079.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
          Length = 550

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 148/404 (36%), Positives = 232/404 (57%), Gaps = 10/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F  LGL+P ++ AVL AG+ +PT +Q   IP  L  HD+   +QTG+GKTA+F+LP +
Sbjct: 1   MSFDTLGLAPSLLSAVLKAGFTEPTSVQAAAIPKALAGHDLMVSSQTGSGKTAAFMLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
             I      +    + L+L PTRELA QVA+  ++YG +      A+++GG+P+ AQ K 
Sbjct: 61  NRISNMPPNKGSGVQVLVLTPTRELAMQVAEATKQYGAHLKDLRTAVVVGGMPYGAQLKA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R  DVL+ TPGR++DH    ++ ++ +  LV+DEADRMLDMGFI  I+ I    P  R
Sbjct: 121 LSRRVDVLVATPGRLIDHLQAKRVNLSTVHTLVLDEADRMLDMGFIEDIETIVGRTPSDR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+   + +++   +++P +IE++        I    +       K    L   
Sbjct: 181 QTLLFSATLDGTIARLAAKMMRDPLQIEISGQKQKHTNITQSLLYADDNGHKMR--LLDH 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L     +   I+F + K+   +L   L  QGF+  A+HG+++QR R + L   ++G +++
Sbjct: 239 LLRDSNLDQAIVFTSTKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGMLQKGKLRI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + H  N+D+P +AE+Y+HRIGRTGRAGR G A+TL    +   + 
Sbjct: 299 LVATDVAARGIDVQGISHAVNYDLPMQAEDYVHRIGRTGRAGRSGLAYTLATHSERHKVR 358

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
            IE  I + +       + +   LE    A+  +  +N    +K
Sbjct: 359 RIEHFIGQPIP------AEVIEGLEPKKTARPTYTDRNGSGGKK 396


>gi|331266806|ref|YP_004326436.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5]
 gi|326683478|emb|CBZ01096.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5]
          Length = 525

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 144/373 (38%), Positives = 226/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS +++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIRT---EEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T E ++  ++    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|293364998|ref|ZP_06611715.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037]
 gi|291316448|gb|EFE56884.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037]
          Length = 524

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 144/373 (38%), Positives = 226/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS +++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIRT---EEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T E ++  ++    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|153806359|ref|ZP_01959027.1| hypothetical protein BACCAC_00620 [Bacteroides caccae ATCC 43185]
 gi|149131036|gb|EDM22242.1| hypothetical protein BACCAC_00620 [Bacteroides caccae ATCC 43185]
          Length = 420

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 139/413 (33%), Positives = 227/413 (54%), Gaps = 18/413 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ + IP++L+  D+  +AQTGTGKTA+F+LP+L
Sbjct: 1   MKFSELQLNANVLEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
             L +G+        +I+ PTRELA Q+    E +      +   + GG     FE Q K
Sbjct: 61  NKLSEGKHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPASSVAVYGGNDGILFEQQKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYDDIMQIVKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++   L NP  I++       +       A Y  Y  +   + +
Sbjct: 181 RQTIMFSATMPAKIQQLANTILNNPSEIKLAVSRPADKI----IQAAYVCYENQKLGIIR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   +  +  IIF + K  V  +  +L+    +V  +H +++Q  R  ++ +FK G I 
Sbjct: 237 NLFMDEVPERVIIFASSKIKVKEVTKALKSMKLNVGEMHSDLEQVQREAVMHDFKAGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V NFDVP+ +E+Y+HRIGRT RA   G A T V++++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFVSEKEQSNF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            +IE  +EK++         +  P E  +  ++    K      K   + +R+
Sbjct: 357 KSIENFLEKEI-------YKIPIPTELGEAPEY----KPRSFSNKGGNYSKRR 398


>gi|332534395|ref|ZP_08410235.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036129|gb|EGI72604.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 425

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 141/421 (33%), Positives = 223/421 (52%), Gaps = 9/421 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  ++P+VV  + + G+   TPIQ K +P +    D+ G AQTGTGKT +F+     
Sbjct: 10  KFSDFAIAPEVVAGLTENGFEYCTPIQAKCLPFICDGRDIAGQAQTGTGKTLAFLTATCH 69

Query: 62  IL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L +  +A  + PR LI+ PTRELA Q+  + +    + NL + L+ GG  +E Q  +LE
Sbjct: 70  RLLQSSKAPSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGEDYEKQRAQLE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+LI T GR++D + +G   +N IE++V+DEADRM D+GFI  I+ +   +P T + 
Sbjct: 130 KGVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMFDRMPDTSKR 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L    + T   +     F       E        +T +      +    +    L   L 
Sbjct: 190 LNLLFSATLSYRVQELAFEHMTN-PEHVQIEPDVKTGKRIQEELFHPSQEDKIKLLLTLI 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  I+F N K +   +   L+  G  V  + G+++Q+ R  IL+ F +G +  +V
Sbjct: 249 EEEWPEKAIVFANTKHSCETVYAWLKSDGHRVGMLTGDVNQKKRQTILAQFSKGDLDFLV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL IP+V HVFNFD+P+  E+Y+HRIGRTGRAG  G A +   ++   ++  I
Sbjct: 309 ATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTGRAGASGHAISFACEQYAYNLHEI 368

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN--PIPQKSTGFDRRKKNYSSQKS 418
           E+ IE  +   + D ++L       D+ Q    RK N    P+  +    R+ N S QK 
Sbjct: 369 EEYIEHSIPLSHYDKTALLD-----DLTQPIIQRKRNYSTGPRNRSNNSGRRPNNSYQKG 423

Query: 419 H 419
            
Sbjct: 424 R 424


>gi|299067900|emb|CBJ39113.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum CMR15]
          Length = 548

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 164/437 (37%), Positives = 249/437 (56%), Gaps = 13/437 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY +PTPIQ + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 61  TI--------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                     ++         R L+L PTRELAAQV ++   YGK   L   ++ GG+  
Sbjct: 61  HRLSAVQPNKVQTPNGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q   L+RG D+++ TPGR+LDH  +  + +++IE+LV+DEADRMLDMGFI  I+ I +
Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           ++P  RQ LLFSAT +D+++ +++  L  P  IEV   ++TAET+E        +  ++ 
Sbjct: 181 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKREL 240

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                 L S +     ++F   K     L   L + G    AIHGN  Q +R + LS FK
Sbjct: 241 ---LAKLVSDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALSEFK 297

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT++++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  +
Sbjct: 298 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 357

Query: 353 DIKHIDAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           +   +  IE+LI++++    L+G         E I   +++          +     +  
Sbjct: 358 EHGLLRDIERLIKRELPRTVLSGFEPDPTIAPEPIPNGRNSARAPRQGGGGRGQQPRQAA 417

Query: 411 KNYSSQKSHIPLKESEK 427
            N + ++   P +   +
Sbjct: 418 GNAAPREPRAPREPRRE 434


>gi|229196679|ref|ZP_04323422.1| ATP-dependent RNA helicase [Bacillus cereus m1293]
 gi|228586754|gb|EEK44829.1| ATP-dependent RNA helicase [Bacillus cereus m1293]
          Length = 451

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 145/409 (35%), Positives = 231/409 (56%), Gaps = 14/409 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 3   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 63  KIDPECSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLTTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T  TIE           +      + + 
Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQ---RVIETTDRAKPDALRFVM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGIAITFVAAKDEKHLEEI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           EK +   +     +     P ++++D    N      P P+KS  + +R
Sbjct: 357 EKTLGAPIQREIIE----QPKIKRVD---ENGKPVPRPAPKKSGEYRQR 398


>gi|148378643|ref|YP_001253184.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC
           3502]
 gi|153933936|ref|YP_001383027.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC
           19397]
 gi|153937665|ref|YP_001386574.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. Hall]
 gi|148288127|emb|CAL82195.1| putative ATP-dependent RNA helicase rhle [Clostridium botulinum A
           str. ATCC 3502]
 gi|152929980|gb|ABS35480.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC
           19397]
 gi|152933579|gb|ABS39078.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. Hall]
          Length = 425

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 172/425 (40%), Positives = 256/425 (60%), Gaps = 11/425 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   +  A+ + GY K TPIQ K+IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGRDLVGCAQTGTGKTAAFAVPVL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L K +   + PRT+   +L PTRELA Q+ ++FE YGK  NL  A++ GG+    Q K
Sbjct: 61  QNLSKDKKVNKNPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+LI TPGR+LD FN+  + + NIE  V+DEADRMLDMG I  ++ I S +P  
Sbjct: 121 ALREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKA 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM  E+ K+ ++ +++P R+EV   SST +TI       Y    K+   L +
Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTI---TQEVYHVRKKQKRALLK 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++++ ++F   K+    +   L + G    AIHGN  Q +R + L+NFKEG I+
Sbjct: 238 HLLKDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HVFN+++P+  E Y+HRIGRTGRAG  G A +    E+ K +
Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDIPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357

Query: 358 DAIEKLIEKKVDWL---NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS--TGFDRRKKN 412
            AIEKLI K++  +      +  +N    K +  + N   K++   Q       + R+KN
Sbjct: 358 KAIEKLINKEIPVVEDHPYKIRHINEGEIKKENTKDNFNEKSSTKRQGGNWRYSNNRRKN 417

Query: 413 YSSQK 417
            S+++
Sbjct: 418 NSTKQ 422


>gi|332532553|ref|ZP_08408430.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037974|gb|EGI74422.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 434

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 155/434 (35%), Positives = 238/434 (54%), Gaps = 9/434 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F     +P+++ A+ +  Y   TPIQ   IP V +  DV   AQTGTGKTA+F LP++
Sbjct: 1   MNFKSFSFAPEIIQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPII 60

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +        P  L+L PTRELA Q+A+NF  + K+ +L V  L GG+    Q   L
Sbjct: 61  QKLVESELSTTNAPHALVLAPTRELAEQIANNFRDFAKHTSLKVVSLFGGVSTAGQANAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D+++ TPGR+ DH   G L + +++ LV+DEADRMLDMGFI  +QN+       RQ
Sbjct: 121 KEGVDIVVATPGRLFDHIRLGNLSLASVKHLVLDEADRMLDMGFIEDMQNVIKSCAEERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT    +++ +   L+  + + V+    T  T        Y    ++   L   L
Sbjct: 181 ILLFSATFPAAIKQFASKVLKQAEIVRVD---QTNSTASTVEHVVYPVEERRKQELLSEL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F N K+    L   L   G      HG+  Q +R + L  FKEG ++++
Sbjct: 238 IGKKNWQQVLVFVNMKETADELVKELNLDGIPAGVCHGDKSQGNRRRALREFKEGKVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+++AARG+DI  +  V N D+P  AE+Y+HRIGRTGRAGR G+A + V++E+   +  
Sbjct: 298 VATEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGRQGQAISFVSREEENTLFE 357

Query: 360 IEKLIEKKVD--WLNG-DLSSLNPPLEKI-DIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           IE LI +K+   +L G ++S+    ++KI     H    ++N +  ++TG + R  N S 
Sbjct: 358 IETLIGQKIKRVYLEGYEVSNREVLIDKIGKKPAHLRRTRSNKLSGQATG-EARAVNRSR 416

Query: 416 QKSHIPLKESEKIS 429
             S     + EK+S
Sbjct: 417 ISSVRKSLKGEKLS 430


>gi|148825298|ref|YP_001290051.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittEE]
 gi|148715458|gb|ABQ97668.1| ATP-dependent RNA helicase [Haemophilus influenzae PittEE]
          Length = 439

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 143/440 (32%), Positives = 226/440 (51%), Gaps = 9/440 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP + 
Sbjct: 5   QFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++       
Sbjct: 65  HLLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QT
Sbjct: 125 TNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL       L N     V+   S  E  +      +A  ++    L     
Sbjct: 185 LLFSATLEGELLVDFAERLLNDPVK-VDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +  GI+F  ++++   L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 244 ETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           ++  E+  K   L G      PP  K    +    ++   I +K     + +     +  
Sbjct: 364 KRYTEEILKARILAGLEPRTKPP--KDGEVKSVSKKQKARIKEKREDKKKTEAKKKVKLR 421

Query: 419 HIPLKESEKISKLQQDIQEN 438
           H   K+++ I K ++    N
Sbjct: 422 H---KDTKNIGKRRKPSNSN 438


>gi|171318169|ref|ZP_02907335.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
 gi|171096637|gb|EDT41526.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
          Length = 571

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 176/492 (35%), Positives = 250/492 (50%), Gaps = 41/492 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+  ++ A+ + GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 86  TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 145

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L    +    P        IL PTRELA QVA N   Y K+ +L  A++ GG+    Q 
Sbjct: 146 RLLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQM 205

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 206 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 265

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +                +  
Sbjct: 266 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKHSAVVQL 325

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                   +K  I+FCN K     L  +LE+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 326 L---RDRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEI 382

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 383 EALVATDVAARGLDIVELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 442

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA-----------------------QHNHA 393
           +  IEKLI++ ++     L    P   + D                         +H  A
Sbjct: 443 LADIEKLIKRPLEVQTLALD--KPSRHRHDDRGGERAGERGGERGGERGGRRERDEHRGA 500

Query: 394 RKNNPIPQKSTGFDRRKKN------YSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
                   + +G  RR +           +  +P  + E+    QQ   E          
Sbjct: 501 SARRSGGSERSGHHRRHEAPVDDFFLKPYEPSVPATQPEETQSAQQ--HEKKGPKRQVAA 558

Query: 448 NMPAFMLPKNRG 459
            +  F +P+   
Sbjct: 559 LLGGFGMPRKPS 570


>gi|126175289|ref|YP_001051438.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|153001611|ref|YP_001367292.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|160876347|ref|YP_001555663.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|217972460|ref|YP_002357211.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|125998494|gb|ABN62569.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
 gi|151366229|gb|ABS09229.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|160861869|gb|ABX50403.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|217497595|gb|ACK45788.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
 gi|315268537|gb|ADT95390.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 433

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 154/434 (35%), Positives = 237/434 (54%), Gaps = 11/434 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     SP+++ A+ D GY + TPIQ + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             + +  +          IL PTRELAAQVADN   Y K  N +V  + GG+  E Q +K
Sbjct: 61  QKMVENPSETLKSNARVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RGADV++ TPGR+L+H     L ++N++ LV+DEADRMLDMGF   IQ I   V   R
Sbjct: 121 LKRGADVIVATPGRLLEHLTACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  ++K++ + +  P+ I V+  ++TA+T+         +  ++       
Sbjct: 181 QNLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F   +     L   L   G     +HG+  Q SR + L  F  G +++
Sbjct: 239 -IGKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGDKGQGSRRRALREFVAGDVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDIP + +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLA 357

Query: 359 AIEKLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            IEKLI +++  +       G    L   L+          R +N   Q +   + + + 
Sbjct: 358 DIEKLIGQQIRRVTVPGYEVGSRELLLKQLQTRRSFAKKQQRTDNVGAQVTAEKNMQGRR 417

Query: 413 YSSQKSHIPLKESE 426
              +    P K  +
Sbjct: 418 VKMKVGQAPSKAKK 431


>gi|325191409|emb|CCA26186.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 463

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 143/429 (33%), Positives = 222/429 (51%), Gaps = 7/429 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+   +  A+   G+ KP+ IQ + IP  L   D+ G+A+TG+GKT +FV+P+L 
Sbjct: 30  TFEQLGVDATLCEAIASLGWSKPSKIQQEAIPHGLAGRDLIGLAETGSGKTGAFVIPILQ 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  L  A ++GGI    Q   L R
Sbjct: 90  SLLRSPQRLYA---LVLAPTRELAYQISEQFEALGASIGLKCACVVGGIDMMNQQIALAR 146

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K      I+ LV+DEADRML M F   I  I  L+P  R T
Sbjct: 147 KPHIIIATPGRLVDHLENTKGFSLRTIKFLVLDEADRMLSMDFEEEINQIVQLMPSERNT 206

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+    L NP +I     +    T E+         +K        + 
Sbjct: 207 YLFSATMTSKVAKLQRASLLNPIKI---EITHKFATPENLRQHYLFIPAKFKDCYLSYIL 263

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ +IF +       +   L   GF    +HG + Q +R+  L+ FK  T +++V
Sbjct: 264 NEVAGQSILIFASTCNGTQKVTLMLRNLGFQAICLHGQMSQPNRLGALNKFKAKTRKILV 323

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A+RGLDIP V  V N+D+P   ++YIHR+GRT RAGR G A + V + D++    I
Sbjct: 324 CTDVASRGLDIPSVDVVMNYDIPTHGKDYIHRVGRTARAGRAGIAVSFVTQYDVELYQRI 383

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E L+ KK+D    D  ++    E++  AQ     +   +  K      R+ +  +  +H 
Sbjct: 384 EFLLGKKLDAYPCDEQTVLIMQERVGEAQRIATNEMKELASKRGKRHDRESDDDNTDAHH 443

Query: 421 PLKESEKIS 429
              ++ K +
Sbjct: 444 GSTKNYKSA 452


>gi|160884579|ref|ZP_02065582.1| hypothetical protein BACOVA_02566 [Bacteroides ovatus ATCC 8483]
 gi|237718558|ref|ZP_04549039.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4]
 gi|260174903|ref|ZP_05761315.1| ATP-dependent RNA helicase [Bacteroides sp. D2]
 gi|299145716|ref|ZP_07038784.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_23]
 gi|315923146|ref|ZP_07919386.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156110318|gb|EDO12063.1| hypothetical protein BACOVA_02566 [Bacteroides ovatus ATCC 8483]
 gi|229452018|gb|EEO57809.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4]
 gi|298516207|gb|EFI40088.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_23]
 gi|313697021|gb|EFS33856.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 422

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 139/416 (33%), Positives = 231/416 (55%), Gaps = 19/416 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ + IP++L+  D+  +AQTGTGKTA+F+LP+L
Sbjct: 1   MKFSELQLNANVLEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
             L +G+        +I+ PTRELA Q+    E +     ++   + GG     FE Q K
Sbjct: 61  NKLSEGKHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIAKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++   L NP  I++       +       A Y  Y  +   + +
Sbjct: 181 RQTIMFSATMPAKIQQLANTILNNPSEIKLAVSKPAEKI----IQAAYVCYENQKLGIIR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   +  +  I+F + K  V  +  +L+    +V  +H +++Q  R  ++  FK G I 
Sbjct: 237 SLFMDEVPERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V NFDVP+ +E+Y+HRIGRT RA   G A T +++++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQSNF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            +IE  +EK++  +        P  E++  A     R  +    K  G + ++K++
Sbjct: 357 KSIENFLEKEIYKI--------PIPEELGEAPEYKPRSFS----KGKGGNYKRKDF 400


>gi|114682557|ref|XP_001166433.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 isoform 4 [Pan
           troglodytes]
          Length = 807

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 153/476 (32%), Positives = 238/476 (50%), Gaps = 34/476 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 218 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 277

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 278 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 397

Query: 180 TLLFSATMTDELQKVSENFLQN-----------PKRIEVNTPSSTAETIEHCFVATYAQY 228
           T+LFSATMTDE  + +                 P RI VN+ +  A  +   F+      
Sbjct: 398 TMLFSATMTDERAEETWLCAWQVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNR 457

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
                 +   L ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L
Sbjct: 458 EGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEAL 517

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             FK+  I ++VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +L
Sbjct: 518 RRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSL 577

Query: 349 VAKEDIKHIDAIEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHN 391
           V +++ K +  I K  +                  K++ +  D+ ++     +    Q +
Sbjct: 578 VGEDERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQS 637

Query: 392 HARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
            A+ N        G +   +    ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 638 EAQINTAKRLLEKGKEAVVQE--PERSWFQTKEERKKEKIAKALQEFD---LALRG 688


>gi|54307767|ref|YP_128787.1| ATP-dependent RNA helicase SrmB [Photobacterium profundum SS9]
 gi|46912190|emb|CAG18985.1| putative ATP-dependent RNA helicase SrmB [Photobacterium profundum
           SS9]
          Length = 419

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 129/370 (34%), Positives = 201/370 (54%), Gaps = 3/370 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF++L L   ++ A+ + GY +PT +Q + IP  L   DV   A TGTGKTA+F+LPM+ 
Sbjct: 3   DFSELELDSALLNAIEEIGYTRPTEVQAQAIPHALDGRDVLASAPTGTGKTAAFLLPMIQ 62

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L     +   P  + IL PTRELA Q+AD+     KN +L +  + GGI ++   + L 
Sbjct: 63  HLLDFPRKKPGPARVLILTPTRELAIQIADHARALAKNTHLKIFTITGGISYDDHAELLG 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR++++    +     IE L++DEADRMLDMGF   ++ I     + RQ+
Sbjct: 123 KTQDIVVATPGRLMEYVESERFDCRAIECLILDEADRMLDMGFTKIVERINHECRWRRQS 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  +  +     +        + PS       H           K ALL+Q   
Sbjct: 183 LLFSATLEGKGVREFSETILKEPVEVNSAPSRRERKKIHQLYLRCDDMDHKLALLEQ--I 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F   +  +  L   L         I G + Q SR   +S F++G + +++
Sbjct: 241 LKHQAERSIVFVKTRDRLAMLRDQLASMNVKCSWIQGEMAQLSRNNAISRFRDGDVNILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+PD+ HV NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D   I+ +
Sbjct: 301 ATDVAARGIDLPDISHVINFDMPRTADVYLHRIGRTARAGKKGIAISLVEAHDQAMIERV 360

Query: 361 EKLIEKKVDW 370
            + +E++V  
Sbjct: 361 SRYMEEEVPE 370


>gi|315040958|ref|XP_003169856.1| ATP-dependent RNA helicase DBP2 [Arthroderma gypseum CBS 118893]
 gi|311345818|gb|EFR05021.1| ATP-dependent RNA helicase DBP2 [Arthroderma gypseum CBS 118893]
          Length = 558

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 133/380 (35%), Positives = 216/380 (56%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ KPTPIQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 142 TFDEAGFPQYVMSEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 201

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 202 HINAQPLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQIRDL 261

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 262 TRGVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQ 321

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T ++SAT   ++++++ +FLQ+  ++ + +   +A       V   +++ K+  +++ L 
Sbjct: 322 TCMWSATWPKDVRQLANDFLQDYIQVYIGSQDLSANHRITQIVEVVSEFEKRDRMIKHLE 381

Query: 240 QSQDTMKNGIIFCNQKKNV-VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +  K+ ++     K V  ++   L + G+   +IHG+  Q  R  +L+ FK G   +
Sbjct: 382 RIMEDKKSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPI 441

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ D+ HV N D PN +E+Y+HRIGRTGRAG +G A TL   E+ K   
Sbjct: 442 MVATDVASRGIDVRDITHVLNHDYPNNSEDYVHRIGRTGRAGANGTAITLFTTENAKQAR 501

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + K++ +    ++  L+ +
Sbjct: 502 DLVKILTESKQQIDPRLAEM 521


>gi|197335615|ref|YP_002156614.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197317105|gb|ACH66552.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 398

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 153/403 (37%), Positives = 240/403 (59%), Gaps = 8/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ A+ + GY  PTPIQ K IP+ L   ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSDPILKAIDELGYKAPTPIQQKAIPVALTGKNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            IL +   +VR    R LIL PTRELA QV +N ++Y K+ ++T   + GG+ ++ Q ++
Sbjct: 61  EILSEDSTKVRAKRIRALILTPTRELAIQVEENIQQYSKHIDITSLAMYGGVDYKDQKQR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G DVL+ TPGR+LD + +  +  + ++ILV+DEADRMLDMGFI  I  I   +P  R
Sbjct: 121 LIEGVDVLVATPGRLLDMYTQRAIHFDELDILVLDEADRMLDMGFIEDINKIIERLPLDR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT++D+++ +++  + NP  I ++  ++++  I+                    
Sbjct: 181 QNMLFSATLSDQVRYLAKTAINNPIEISISPKTTSSPQIDQWLTTVDKDKKSALLSHL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++     +IF   K     L   LEK+     A H    Q +R K+L++FKEG +Q 
Sbjct: 239 -IKENNWDQALIFIETKHGAAKLVSQLEKRDIRAEAFHSGRSQEARAKVLNDFKEGKLQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+ +AARG+DI ++  V N+D+P  A++Y+HRIGRTGRAG  G+A + V+K+D K++ 
Sbjct: 298 LVATGIAARGIDIDELTRVVNYDLPFPADDYVHRIGRTGRAGAKGEAISFVSKDDFKNLC 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            IE  +   +  +  ++     P +++ I+  N+  K  P P+
Sbjct: 358 MIESRLGHLI--VRKEIEGF-APRKEVPISILNYKPKRKPAPK 397


>gi|293375719|ref|ZP_06621991.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
           PC909]
 gi|325838961|ref|ZP_08166744.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
 gi|292645662|gb|EFF63700.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
           PC909]
 gi|325490616|gb|EGC92928.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
          Length = 538

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 144/412 (34%), Positives = 240/412 (58%), Gaps = 13/412 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL LSP  + A+ + GYVKP+PIQ + IP+VL   D+ G AQTGTGKTA+F+LP+L
Sbjct: 4   ITFKDLALSPSTLKAIEEIGYVKPSPIQAEAIPVVLAGKDIIGQAQTGTGKTAAFMLPIL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++     V+    L+L PTRELA QV +  +K+ +N      L I  G  ++ Q + L
Sbjct: 64  EKIDPKNKNVQ---ALVLCPTRELAVQVHEESKKFSRNNRDVHILSIYGGQSYDPQIRAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G  +++ TPGR++DH  RG L + N+++LV+DEAD ML+MGF   I+ I    P +RQ
Sbjct: 121 KKGVQIVVGTPGRVMDHMRRGTLKLENLKMLVLDEADEMLNMGFKDDIEEILEKTPESRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++FSATM  E+  +++ + +NP+ ++V +   + + I+  +V    Q   +  +     
Sbjct: 181 TVMFSATMAREIMNIAKTYQKNPEVVKVVSEELSNKKIDQYYVEVKRQDRVQAMIR---C 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                + + I+F N K+ V  L   L+++G+    +HG++ Q  R +++++F+   + ++
Sbjct: 238 IDMMGLTSSIVFTNTKREVDELVSKLQEEGYVTEGLHGDLKQAQRDRVMNSFRRKNVNIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V  VFN+D+P   ENY+HRIGRTGRAG  G + T V  +D+  I  
Sbjct: 298 VATDIAARGIDVSNVEAVFNYDIPLNEENYVHRIGRTGRAGMTGLSITFVFGKDMFRIRR 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           IE   + K+  +        P +E+I   +  +         +   F +  +
Sbjct: 358 IEDYTKTKMSKMPI------PSVEEIQAKKSTNVIDEIVANLEGKDFSKENE 403


>gi|260175083|ref|ZP_05761495.1| putative ATP-dependent RNA helicase [Bacteroides sp. D2]
 gi|315923311|ref|ZP_07919551.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697186|gb|EFS34021.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 374

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 149/372 (40%), Positives = 222/372 (59%), Gaps = 5/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L ++  ++ A+ + GY  PTPIQ + IP  L + D+ G AQTGTGKTASF +P++
Sbjct: 1   MTFKELNITEPILKAIEEKGYAVPTPIQGEAIPAALAKRDILGCAQTGTGKTASFAIPII 60

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L+  +   + R  + LIL  TRELA Q+++    Y K   +   ++ GG+    Q   
Sbjct: 61  QHLQMNKEAAKCRGIKALILTSTRELALQISECINDYAKYTQVRHGVIFGGVNQRPQVDM 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD  N+G + ++ I+  V+DEADRMLDMGFI  I+ I   +P  +
Sbjct: 121 LHKGIDILVATPGRLLDLMNQGHIHLDKIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM D +  ++ + L+NP RI +   SST + I       Y    K+ +LL   
Sbjct: 181 QTLFFSATMPDTIISLTNSLLKNPVRISITPKSSTVDAI---EQMVYFVEKKEKSLLLVS 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   ++ ++F   K N   +   L K G    AIHGN  Q +R   L NFK G  ++
Sbjct: 238 ILQKSEDQSVLVFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQLALGNFKSGKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A T  ++E+ K ++
Sbjct: 298 MVATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQEERKLVN 357

Query: 359 AIEKLIEKKVDW 370
            I+KL  KK++ 
Sbjct: 358 DIQKLTGKKLNK 369


>gi|18645108|gb|AAL76409.1| ATP-dependent RNA helicase RhlE [uncultured marine proteobacterium]
          Length = 446

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 154/367 (41%), Positives = 226/367 (61%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ AV D GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 10  MSFSTLGLSESLLKAVADEGYTAPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLL 69

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L KG+  +    R L+L PTRELAAQVA++ + YGK  NL  A++ GG+    Q  +L
Sbjct: 70  HGLSKGQPAKANQVRALVLTPTRELAAQVAESVDIYGKYLNLRSAVVFGGVKINPQMMRL 129

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+LI TPGR+LD + +  +    +E+L++DEADRMLDMGFI  I+ I   +P  RQ
Sbjct: 130 RKGVDILIATPGRLLDLYQQNAMSFQKLEVLILDEADRMLDMGFIHDIRRIMKALPKKRQ 189

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +++++ +++  + NP  I V   +STA ++            +   +     
Sbjct: 190 NLMFSATFSEDIRDLAKTIVNNPVEISVTPRNSTAVSVTQWIHPVDKNQKRHLLVEL--- 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q   +  ++F   K+    L   LEK+     AIHGN  Q +R + LS FK G ++++
Sbjct: 247 INQHNWEQVLVFSRTKRGANRLAEFLEKKDIQAAAIHGNKSQGARTRALSEFKSGKLRVL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N D+P  A++Y+HRIGRTGRAG  G+A +LV+ ++ + +  
Sbjct: 307 VATDIAARGLDIEQLPQVVNLDLPEVAQDYVHRIGRTGRAGATGQAISLVSADEAQLLQD 366

Query: 360 IEKLIEK 366
           IE+LI+ 
Sbjct: 367 IERLIQT 373


>gi|163943135|ref|YP_001648019.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|163865332|gb|ABY46391.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
          Length = 481

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 141/411 (34%), Positives = 236/411 (57%), Gaps = 14/411 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFTDYALSKEIVRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  +++K+S  ++ +P  IE+     T + IEH     +    ++   L + + +
Sbjct: 182 LFSATLPKDVEKLSRTYMDSPTHIEIKATGITTDKIEH---TLFEMKEEEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVFQQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG +GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK--NNPIPQKSTGFDRRK 410
           + I  ++        +L P  E++   +     K    PI +K    D  K
Sbjct: 359 EYIGFEIP------KALAPSKEEVMKGKAVFEEKIHAKPIIKKDKNADLNK 403


>gi|85058891|ref|YP_454593.1| ATP-dependent RNA helicase RhlE [Sodalis glossinidius str.
           'morsitans']
 gi|84779411|dbj|BAE74188.1| putative ATP-dependent RNA helicase [Sodalis glossinidius str.
           'morsitans']
          Length = 453

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 160/432 (37%), Positives = 245/432 (56%), Gaps = 25/432 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGLS +V+ A+ + GY++PTP+Q + IP VLQ  D+   AQTGTGKTA+F LP+ 
Sbjct: 1   MSFDSLGLSAEVLRALAEKGYLEPTPVQQQAIPYVLQGRDIMASAQTGTGKTAAFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                       + R  R LIL PTRELAAQ+ +N  +Y  +  L   ++ GG+    Q 
Sbjct: 61  QLLDQRPAPAGKQRRPIRALILTPTRELAAQIGENITEYSAHLGLRSLVVFGGVSINPQM 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            KL  G +VL+ TPGR+LD   +  + ++ +EILV+DEADRMLDMGFI  I+ +  L+P 
Sbjct: 121 MKLRGGVEVLVATPGRLLDLAQQRAVDLSQVEILVLDEADRMLDMGFIHDIRRVMKLLPT 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ+L+FSAT +DE++ ++ + L NP  +EV   ++ +E I       +    K+   L 
Sbjct: 181 KRQSLMFSATFSDEIKTLANSLLDNPASVEVARRNTASEQI---TQFVHMVDKKRKRELL 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             +  ++  +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G+I
Sbjct: 238 SDMIGRNNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKQGSI 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI  + HV N+++P  AE+Y+HRIGRTGRA   G+A +LV  +++  
Sbjct: 298 RVLVATDIAARGLDIDLLPHVVNYELPQVAEDYVHRIGRTGRAAATGEALSLVCVDELGL 357

Query: 357 IDAIEKLIEKKVDW--LNGDLSSLNPPLEKID----------------IAQHNHARKNNP 398
           +  IE+L++K +    L G     +   E I                     + AR +  
Sbjct: 358 LRDIERLLKKPIPRIVLPGYDPDSSIKAEPIQQGRGSRGGGGARGGRGAPAGDAARDSRS 417

Query: 399 IPQKSTGFDRRK 410
            P++     RR 
Sbjct: 418 GPRRDGAQSRRS 429


>gi|167835963|ref|ZP_02462846.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis MSMB43]
          Length = 397

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 165/399 (41%), Positives = 234/399 (58%), Gaps = 18/399 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+ +++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L++P+ IEV   ++ A T+            +   +  
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRDPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                  ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 ---IRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIVELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           +  IEKLI++ +      L +L     ++D+ +H H  +
Sbjct: 369 LADIEKLIKRTLS-----LETL-----ELDLPRHRHDER 397


>gi|288959250|ref|YP_003449591.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
 gi|288911558|dbj|BAI73047.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
          Length = 456

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 161/461 (34%), Positives = 247/461 (53%), Gaps = 8/461 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F++LGL P V+ A+    Y  PTP+Q+  IP  LQ  D+   A+TGTGKTA+F+LP +
Sbjct: 1   MSFSELGLHPLVLKALEAFEYTTPTPVQLAAIPPALQGRDILATAETGTGKTAAFMLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               E        PR L+L PTRELA QV D   KY K   L +  ++GG+P+  Q + L
Sbjct: 61  TRTAELPLNGAATPRVLVLAPTRELAKQVTDAARKYAKFMKLNIVDVVGGMPYREQLRLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R  DVL+ TPGR+LDH  R ++ ++ +E+L++DEADRMLDMGF+  ++ I    P TRQ
Sbjct: 121 SRPVDVLVATPGRLLDHVARRRIALDEVEVLILDEADRMLDMGFLDDVETIAKCCPPTRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLF+AT+   + +++ N L+NP+R+ V + +++    +    A    + ++     Q  
Sbjct: 181 TLLFTATLDRRMAQLAGNLLRNPERVAVESQATSVNVEQRLHHADDMDHKRRL---LQHF 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q+ +   IIF   K++   L   L   G +  A+HG++DQ  R + L   + G ++L+
Sbjct: 238 AAQEEVGKAIIFAATKRDADTLAEELSAAGHAAAALHGDMDQTKRNRTLQRLRTGQVRLL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ D+ HV NFD+P  AE+Y+HRIGRTGRAG  G A +  A+ D + +  
Sbjct: 298 VATDVAARGIDVRDITHVINFDLPRSAEDYVHRIGRTGRAGASGVAISFAARADRETLVR 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+  +  ++     +  L  P               N  P    G     +N  S+  H
Sbjct: 358 IERYTKATLEV--HVVPGLE-PTRPFTTGGGGRPAGRNGRPGGGAGKPWH-RNGESKGPH 413

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
            P       ++      ++  D    R +      P  R K
Sbjct: 414 APRGPRPDYARNDNHRGDSRPDHGHARRDAHGNGKPAARAK 454


>gi|225028959|ref|ZP_03718151.1| hypothetical protein EUBHAL_03251 [Eubacterium hallii DSM 3353]
 gi|224953734|gb|EEG34943.1| hypothetical protein EUBHAL_03251 [Eubacterium hallii DSM 3353]
          Length = 529

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 145/384 (37%), Positives = 219/384 (57%), Gaps = 9/384 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L + P+++ AV + G+   +PIQ K IP+ L   DV G AQTGTGKTA+F +P+L
Sbjct: 4   VKFTELDIKPEILKAVANMGFEAMSPIQAKAIPVELSGKDVIGQAQTGTGKTAAFGIPIL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++    +++ P+ ++L PTRELA QVAD   K  K  +    L I  G     Q + L
Sbjct: 64  QKVDP---KLKKPQAIVLCPTRELAIQVADEIRKLAKYMSSVKILPIYGGQEISKQIRSL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  ++I TPGR++DH  R  +  +NI  +V+DEAD MLDMGF   I+ I + VP  RQ
Sbjct: 121 KAGVQIIIGTPGRMMDHMRRKTVKFDNIHTVVLDEADEMLDMGFREDIETILNGVPEERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + +++  + QNP+ I+V     T   I   +        K  + +   L
Sbjct: 181 TMLFSATMPKPIMELARAYQQNPEIIKVIRKELTVPNITQYYYEVRP---KNKSEVLSRL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  ++FCN KK V  L   L+ +G+    +HG++ Q  R +++  F+ G   ++
Sbjct: 238 LDIYDPKLSVVFCNTKKGVDELVADLKGRGYFAEGLHGDMKQTMRDRVMHRFRSGKTDIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G AF+ V   ++  +  
Sbjct: 298 VATDVAARGIDVDDVDAVFNYDLPQDEEYYVHRIGRTGRAGRTGMAFSFVVGREVYKLKD 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE 383
           I +  + K+      + SLN   E
Sbjct: 358 IRRYCKAKIKAQP--IPSLNDVTE 379


>gi|163800537|ref|ZP_02194438.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           AND4]
 gi|159175980|gb|EDP60774.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           AND4]
          Length = 416

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 160/420 (38%), Positives = 250/420 (59%), Gaps = 9/420 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++FADLG++ ++V  +     V PTP+Q K+IP +L+  D+   AQTGTGKTA+F LP++
Sbjct: 3   VNFADLGIAQQLVDTLSGMNIVTPTPVQEKSIPHILEGKDLLAAAQTGTGKTAAFGLPII 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++ + R   P+ LIL PTRELA QV DN  +Y  N NL +  + GG     Q KKLE
Sbjct: 63  QSVQQNK-RDGAPKALILVPTRELAQQVMDNLIQYSANTNLNIVCVYGGTSIGVQKKKLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+LI TPGR+LDH   G +++    ILV+DEADRMLDMGF P +Q I   +P  +QT
Sbjct: 122 EGADILIATPGRLLDHLFNGNVIIAKTGILVLDEADRMLDMGFWPDLQRILRRLPQDKQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT  + ++ ++   +  P  +EV+  ++TAE +       Y    K+   L   L 
Sbjct: 182 MLFSATFEERIKTIAYKLMDTPIEVEVSPANTTAENV---KQMVYPVDKKRKRELLAYLI 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  ++F   K+    L   L+  G    +I+G+  Q +R + L +FKEG ++ ++
Sbjct: 239 GSRNWQQVLVFTKTKQGSDELVKELKLDGIKAVSINGDKSQGARQRALDDFKEGKVRALI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L++ ++   + AI
Sbjct: 299 ATDVAARGLDIQALEQVVNFDLPFKAEDYVHRIGRTGRAGKSGLAVSLMSHDEEYLLTAI 358

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           E L++K++  +WL G   SL   +E+++  +++  RK+    ++             +K 
Sbjct: 359 ENLLDKRLPQEWLEGFEPSL---IEEVEPERNSGGRKSRSSEKRKMKAKLAIHKNRGKKR 415


>gi|154285130|ref|XP_001543360.1| eukaryotic initiation factor 4A-12 [Ajellomyces capsulatus NAm1]
 gi|160385733|sp|A6QSQ0|FAL1_AJECN RecName: Full=ATP-dependent RNA helicase FAL1
 gi|150407001|gb|EDN02542.1| eukaryotic initiation factor 4A-12 [Ajellomyces capsulatus NAm1]
          Length = 450

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 118/373 (31%), Positives = 199/373 (53%), Gaps = 5/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L 
Sbjct: 26  TFEDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++      +    L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 86  VIDTVLRETQA---LVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDH 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 143 GQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 203 VVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDL--YD 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++++
Sbjct: 261 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIS 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 321 TDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIE 380

Query: 362 KLIEKKVDWLNGD 374
                ++D +  +
Sbjct: 381 LYYSTQIDEMPMN 393


>gi|91775610|ref|YP_545366.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|91709597|gb|ABE49525.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
          Length = 460

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 160/442 (36%), Positives = 255/442 (57%), Gaps = 19/442 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA L L+P+++ A+ ++GY  PTPIQ + IP+VL+  D+   AQTGTGKTA+F LP+L
Sbjct: 14  ISFASLNLAPELLKALDESGYTTPTPIQAQAIPVVLEGSDLMAGAQTGTGKTAAFTLPLL 73

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L    +    P        IL PTRELA QV ++ + Y K+  L   ++ GG+  ++Q
Sbjct: 74  QKLLPLASSSASPARHPVRALILTPTRELAIQVEESVKTYAKHTPLRSLVVFGGVDIKSQ 133

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L +G ++L+ TPGR+LDH  +  + +  +++LV+DEADRMLDMGF+P ++ I +L+P
Sbjct: 134 TPTLMKGVEILVATPGRLLDHVEQRTVQLGQVQMLVLDEADRMLDMGFMPDLKRILALLP 193

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ L+FSAT + E++K+SE FL  P  IEV   ++T+E +    +   +++ +     
Sbjct: 194 KQRQNLMFSATFSPEIKKLSEEFLTKPVLIEVARSNATSENVTQKILLVESEHKQHVLAD 253

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 +      I+F   K +   L   LE++G +  AIHG+  Q  R++ L  FK+G 
Sbjct: 254 LL----RKEATQVIVFTKTKLSASRLARHLEREGIAAGAIHGDKSQLERIQALDAFKQGK 309

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I  +VA+D+AARGLDI  +  V N+++P+ AE+Y+HRIGRTGRAG  G A +LV+ E+ K
Sbjct: 310 ITALVATDVAARGLDIDQLPMVVNYELPSAAEDYVHRIGRTGRAGASGIAISLVSSEEEK 369

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY-- 413
            +  IEKLI++    L  + ++   P+ +    Q   A  +    Q+  G ++  + +  
Sbjct: 370 FLKEIEKLIKR---ELPKEQANAPQPVRRGQDTQRQKAPASIAPRQRHAGRNKEDEWFFK 426

Query: 414 -----SSQKSHIPLKESEKISK 430
                +   +  P+   EK  K
Sbjct: 427 PYEPSTDAPAPKPMHSREKSKK 448


>gi|300933595|ref|ZP_07148851.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
          Length = 779

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 143/395 (36%), Positives = 232/395 (58%), Gaps = 13/395 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL+ +V+ AV   G+  P+PIQ +TIP++++ +DV G+AQTGTGKTA+F LP+L 
Sbjct: 112 TFDNLGLTSEVLEAVKKVGFEAPSPIQEQTIPVLMEGNDVVGLAQTGTGKTAAFALPILA 171

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++      R P+ L+L PTRELA QVA++FE +  +      L I G   +  Q   L 
Sbjct: 172 RIDPS---KRHPQALVLAPTRELALQVAESFESFATHLGGIHVLPIYGGQAYGIQLSGLR 228

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +++ TPGR++DH N+G L ++ +  +V+DEAD ML+MGF   ++ I    P  +Q 
Sbjct: 229 RGAHIVVGTPGRVIDHLNKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPEDKQV 288

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++++S+ +L +P+ I V +   T+E IE  ++       +        + 
Sbjct: 289 ALFSATMPAGIRRLSKQYLNDPQEITVKSTQRTSENIEQDYLFVNH---RNKLEALTRIL 345

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K     L   L  +GF+  AI+G+I Q  R + +   K+G + ++V
Sbjct: 346 EVTEFEAMIMFVRTKNETEELAERLRARGFNAAAINGDIAQAQRERTVDQLKDGRLDILV 405

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HVFN+D+P+  E+Y+HRIGRTGRAGR G+A   V   + + + AI
Sbjct: 406 ATDVAARGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAGRSGRAILFVTPRERRLLKAI 465

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           E+  +  ++ +        P ++ ++ A+    R+
Sbjct: 466 ERATKSTLNEIE------LPSVDAVNDARKEKFRE 494


>gi|143361556|sp|Q5QMN3|RH20_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 20
          Length = 494

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 138/419 (32%), Positives = 220/419 (52%), Gaps = 20/419 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+G    V+  +  AG+V+PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP + 
Sbjct: 92  EFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIV 151

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA Q+     K+G +  +    + GG+P   Q + L
Sbjct: 152 HVNAQPILAPGDGPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDL 211

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 212 QKGVEIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQ 271

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL +SAT   E+++++ NFL +P ++ + +    A       V   ++  K    L  LL
Sbjct: 272 TLYWSATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILSESQKY-NKLVNLL 330

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +IF + KK    +   L   G+   +IHG+  Q  R  +LS FK G   +M
Sbjct: 331 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIM 390

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD+ DV +V N+D P   E+Y+HRIGRTGRAG  G A+T     + +    
Sbjct: 391 TATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKD 450

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           +  ++E+    ++ +L+++                     P  S+G   R + Y   +S
Sbjct: 451 LINILEEAGQKVSPELANM-----------------GRGAPPPSSGHRDRYRGYGGGRS 492


>gi|146276411|ref|YP_001166570.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145554652|gb|ABP69265.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 453

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 156/420 (37%), Positives = 231/420 (55%), Gaps = 10/420 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGLS K++  +  A + K TPIQ++ IP V+Q  D+ G+AQTGTGKT +F LP+L 
Sbjct: 11  DFSTLGLSEKILQGLAKAQFTKATPIQVEAIPHVMQGRDLMGLAQTGTGKTLAFGLPLLH 70

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                      R  R LIL PTREL +Q+A N E + K   + V  + GG     Q ++L
Sbjct: 71  RLLGVGHPPPPRTIRALILAPTRELVSQIAANLELFTKGTPVKVVTITGGASINRQTERL 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGAD+++ TPGR++D  +R  +++++   LV+DEAD+MLDMGFI  ++ I   +P  RQ
Sbjct: 131 ARGADIMVATPGRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPLKRQ 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   +++++  FL+ P R++V  P    E I             K     +  
Sbjct: 191 TLLFSATMPKLIEELAHTFLREPVRVQVAPPGKPVEKIAQGVHFIPQGDKAKL---LESY 247

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   L   GF   +IHGN  Q  R + L+ F++GT+ ++
Sbjct: 248 LLKHPGEQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGTLDVL 307

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V HV+N+D+PN  ENY+HRIGRT RAG  G A   VA  ++    A
Sbjct: 308 VATDVAARGIDIPGVRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVAPAEMDEFRA 367

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +EKL+++ +  + G      P    I  A     +K     +       + K     K+H
Sbjct: 368 VEKLLKQPIPVIGG-----APWAADIVAAAPRPGQKPRQGGRPRAAGKPQGKPQGQAKAH 422


>gi|296271676|ref|YP_003654307.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296095851|gb|ADG91801.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 488

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 134/369 (36%), Positives = 208/369 (56%), Gaps = 9/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ DAG+ +P+PIQ   IP+VL   D+ G AQTGTGKTA+F LPM+
Sbjct: 1   MTFKDFNFKENLQRAIEDAGFKEPSPIQQDAIPVVLSGKDMVGQAQTGTGKTAAFGLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ++            +++ PTRELA QV+D   ++GK+  +  A + GG  +  Q + ++
Sbjct: 61  NMMNGN----SGVEAVVIVPTRELAMQVSDELFRFGKSSGMNTATVYGGQSYNMQLRNID 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R + ++      I     +GK +      +V+DEAD MLDMGF+  I+ I + +P  RQT
Sbjct: 117 RASIIVATPGRLIDLL--KGKKIDIKPSFVVLDEADEMLDMGFLDDIKEIFTYLPKERQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++N L+ P+ I V     T   I   F            +      
Sbjct: 175 LLFSATMPPAIKKLAQNILKEPEFITVTKAEMTNSKITQLFYVVDEYERDDALIRL---F 231

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  IIFC  KK V  L   L  QG     +HG+++QR R +++ +FK+G + +++
Sbjct: 232 DFKNPEKSIIFCRTKKEVDRLSTYLVSQGHMAKGLHGDMEQRQREEVIRSFKKGALDVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HVFN+ +P  +E+Y+HRIGRTGRAG+ G A ++V   + + I  I
Sbjct: 292 ATDVAARGLDVNDVSHVFNYHLPFDSESYVHRIGRTGRAGKEGVAISIVTPHEFRMIQKI 351

Query: 361 EKLIEKKVD 369
           + +   K++
Sbjct: 352 QHVTGGKME 360


>gi|222110403|ref|YP_002552667.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221729847|gb|ACM32667.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
          Length = 578

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 153/374 (40%), Positives = 234/374 (62%), Gaps = 8/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AV + GY  PTPIQ + IP VL  HD+   AQTGTGKTA+F LPML
Sbjct: 1   MTFEELKLAPAILRAVQEQGYDNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML 60

Query: 61  TILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L +G     +   +  R L+L PTRELAAQV ++   YGK  +L   ++ GG+    Q
Sbjct: 61  HRLAEGQAPRSQFGGKGVRALVLTPTRELAAQVEESVRGYGKYLDLNSTVIFGGVGMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++++RG DVL+ TPGR+LD   +G + ++ +EILV+DEADRMLDMGFI  ++ + +L+P
Sbjct: 121 IERIKRGVDVLVATPGRLLDLQQQGFMDLSTVEILVLDEADRMLDMGFIHDVKKVLALLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            ++Q+LLFSAT +D++++++ + L+NP+ I+V   ++T + I            K+    
Sbjct: 181 QSKQSLLFSATFSDDIRELANSLLKNPQSIQVTPRNTTVQRISQVIHPVGRGKKKQV--- 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              +  +      ++F   K    N+   L K G S  A+HGN  Q +R + L  FK G 
Sbjct: 238 LLHIIQEHDWSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGQ 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ +VA+D+AARG+DI D+ HV N+++PN  E+Y+HRIGRTGRAGR G A +LV  ++  
Sbjct: 298 IRALVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGREGHAVSLVCMDEEG 357

Query: 356 HIDAIEKLIEKKVD 369
            +  IE+  ++++ 
Sbjct: 358 FMMEIERFTKQEIP 371


>gi|121594947|ref|YP_986843.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
           JS42]
 gi|120607027|gb|ABM42767.1| DEAD/DEAH box helicase domain protein [Acidovorax sp. JS42]
          Length = 577

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 153/374 (40%), Positives = 234/374 (62%), Gaps = 8/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AV + GY  PTPIQ + IP VL  HD+   AQTGTGKTA+F LPML
Sbjct: 1   MTFEELKLAPAILRAVQEQGYDNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML 60

Query: 61  TILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L +G     +   +  R L+L PTRELAAQV ++   YGK  +L   ++ GG+    Q
Sbjct: 61  HRLAEGQAPRSQFGGKGVRALVLTPTRELAAQVEESVRGYGKYLDLNSTVIFGGVGMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++++RG DVL+ TPGR+LD   +G + ++ +EILV+DEADRMLDMGFI  ++ + +L+P
Sbjct: 121 IERIKRGVDVLVATPGRLLDLQQQGFMDLSTVEILVLDEADRMLDMGFIHDVKKVLALLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            ++Q+LLFSAT +D++++++ + L+NP+ I+V   ++T + I            K+    
Sbjct: 181 QSKQSLLFSATFSDDIRELANSLLKNPQSIQVTPRNTTVQRISQVIHPVGRGKKKQV--- 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              +  +      ++F   K    N+   L K G S  A+HGN  Q +R + L  FK G 
Sbjct: 238 LLHIIQEHDWSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGQ 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ +VA+D+AARG+DI D+ HV N+++PN  E+Y+HRIGRTGRAGR G A +LV  ++  
Sbjct: 298 IRALVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGREGHAVSLVCMDEEG 357

Query: 356 HIDAIEKLIEKKVD 369
            +  IE+  ++++ 
Sbjct: 358 FMMEIERFTKQEIP 371


>gi|209550473|ref|YP_002282390.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209536229|gb|ACI56164.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 567

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 156/434 (35%), Positives = 241/434 (55%), Gaps = 11/434 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LG+S  +V  +   G   PTPIQ + IPL+L+  D+ G+AQTGTGKTA+F LP++ 
Sbjct: 3   NFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 62

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L     R      RTLIL PTREL  Q+A+  +K+ +  +L + +++GG+    Q  +L
Sbjct: 63  KLLADERRPDNRTTRTLILAPTRELVNQIAETLKKFIRKSHLRINVVVGGVSINKQQLQL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G DVL+ TPGR+LD  NR  + +  +  LV+DEAD+MLD+GF+  ++ I  +VP  RQ
Sbjct: 123 EKGTDVLVATPGRLLDLINRRAISLTTVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   +  ++ ++L +P ++EV  P   A+ +E        +  K    L +  
Sbjct: 183 TMLFSATMPKAIADLAGDYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTE--LLRKS 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++     I+F   K     L   LE  G+SV +IHGN  Q  R + L  F++G+I+ +
Sbjct: 241 LTENPDGRAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKTL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DIP V HV+N+D+P   + Y+HRIGRT RAGR G A    A ++ K +  
Sbjct: 301 IATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRD 360

Query: 360 IEKLIEKKVD----WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF---DRRKKN 412
           IE+L+   +         ++SS  P     +    N         Q          R ++
Sbjct: 361 IERLMGIDIAVASGEAPANISSAGPRRGNGNGNNRNRGGGQGREGQGRGEGRGDQNRSEH 420

Query: 413 YSSQKSHIPLKESE 426
             S++   P +E E
Sbjct: 421 RGSRQERRPRREGE 434


>gi|152977726|ref|YP_001343355.1| ATP-dependent RNA helicase RhlB [Actinobacillus succinogenes 130Z]
 gi|189040023|sp|A6VKC3|RHLB_ACTSZ RecName: Full=ATP-dependent RNA helicase rhlB
 gi|150839449|gb|ABR73420.1| DEAD/DEAH box helicase domain protein [Actinobacillus succinogenes
           130Z]
          Length = 413

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 139/409 (33%), Positives = 213/409 (52%), Gaps = 8/409 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P+++ A+ D  +   TPIQ  ++PL LQ  DV G AQTGTGKT +F+      
Sbjct: 11  FADLPLHPQILAALNDQNFEYCTPIQALSLPLTLQGKDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               +       PR LIL PTRELA Q+A + E   +   L +AL  GG  ++ Q K +E
Sbjct: 71  LLTHQPDFITNQPRALILAPTRELAVQIAHDAESLAQTTKLRIALAYGGDGYDKQLKTIE 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+LI T GR++D+  +G +  N+I+++V+DEADRM D+GFI  I+ +    P  +  
Sbjct: 131 NGVDILIGTTGRVIDYVKQGIIRFNDIQVVVLDEADRMFDLGFIKDIRYLLRKCPAPKSR 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L    + T   +     F       E        +T        +   ++    L   L 
Sbjct: 191 LTMLFSATLSYKVRELAFEDMND-PEYIEIEPLQKTGHRIKEELFYPSNRDKMALLMTLL 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  IIF N K     +   L   G  V  + G++ Q+ R+ +L  F +G + ++V
Sbjct: 250 EEEWPERCIIFANTKHRCEEIWGYLAADGQRVGLLTGDVAQKKRLALLKQFTDGELDILV 309

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL IPDV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   ++   ++ AI
Sbjct: 310 ATDVAARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGMSISFACEQYAMNLPAI 369

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           E+ I   +     D  SL       D+ +    ++N+ IP  S  + +R
Sbjct: 370 EEYIGHHIPVSQYDPDSLIN-----DLPKPYRIKRNHTIPHSSRDYKKR 413


>gi|317472067|ref|ZP_07931399.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
 gi|316900471|gb|EFV22453.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
          Length = 528

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 143/367 (38%), Positives = 224/367 (61%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L ++ K++ AV + G+   +PIQ   IP+VL+  D+ G AQTGTGKTA+F +P+L  
Sbjct: 6   FDELNINDKILKAVKEMGFEAASPIQGAAIPVVLEGRDIVGQAQTGTGKTAAFGIPLLEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    +V+ P+ +IL PTRELA QVAD   K  K  +    L I  G     Q + L+ 
Sbjct: 66  MDT---KVKRPQAMILCPTRELAIQVADEIRKLAKFMHGAKVLPIYGGQNITNQIRSLKT 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA++++ TPGRI+DH  R  L + +++++V+DEAD ML+MGF   I++I   VP  RQTL
Sbjct: 123 GANIIVGTPGRIMDHMRRHTLKLEDLKMVVLDEADEMLNMGFREDIESILKEVPEERQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +  +++ + ++ K I+V     T   IE  +        K+   +   L  
Sbjct: 183 LFSATMPKAILDITKKYQKDSKLIKVVRKELTVPNIEQYYYEVRP---KQKVEVLCRLLD 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + K  I+FCN K+ V  +   L+ +G+    IHG++ Q  R +++ +F+ G + ++VA
Sbjct: 240 MHSPKLSIVFCNTKRMVDEVTGELKGRGYFAEGIHGDLKQSQRDRVMKSFRGGRVDILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G AFT VA ++I  +  ++
Sbjct: 300 TDVAARGIDVDDVDAVFNYDLPQDDEFYVHRIGRTGRAGRTGNAFTFVAGKEIYKLRDVQ 359

Query: 362 KLIEKKV 368
           +  + K+
Sbjct: 360 RYCKTKI 366


>gi|205372271|ref|ZP_03225085.1| hypothetical protein Bcoam_02010 [Bacillus coahuilensis m4-4]
          Length = 499

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 154/410 (37%), Positives = 238/410 (58%), Gaps = 12/410 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L LSP ++ ++   G+ + TPIQ  TIPL L+  D+ G AQTGTGKTA+F +P++ 
Sbjct: 3   KFSELNLSPSMLKSINRMGFEEATPIQAGTIPLSLEGKDIIGQAQTGTGKTAAFGIPLVE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+    LI+ PTRELA QV++   K G +  + V  + GG     Q + +++
Sbjct: 63  KIDTKNTNVQ---GLIIAPTRELAIQVSEELYKVGYDKRVRVLAVYGGQDINRQIRAMKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH NR  L ++ +  LV+DEAD ML+MGFI  I++I   VP  RQTL
Sbjct: 120 GPHIIVGTPGRLLDHINRRTLKLDQVHTLVLDEADEMLNMGFIDDIESILKNVPEGRQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K++ENF+ NP+ ++V +   T   I            ++   +   L  
Sbjct: 180 LFSATMPGPIRKIAENFMTNPETVKVKSKEMTVSLI---DQYFVKAQEREKFDILARLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  I+F   K+ V  L  +L  +G+    IHG++ Q  R  +L  FKEG I+++VA
Sbjct: 237 TQSPELAIVFGRTKRRVDELSKALSIRGYQAEGIHGDLSQAKRSSVLRKFKEGRIEVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E
Sbjct: 297 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAMTFVTPREMGYLRIVE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           +   K++  +     S+N  LE     Q   A++       S G D  +K
Sbjct: 357 QTTNKRMTPMRP--PSVNEALE----GQQRLAKEKLVEAINSNGLDEYEK 400


>gi|68249023|ref|YP_248135.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 86-028NP]
 gi|68057222|gb|AAX87475.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 86-028NP]
          Length = 439

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 134/385 (34%), Positives = 206/385 (53%), Gaps = 4/385 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP + 
Sbjct: 5   QFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   P  LIL PTRELA QVA+  E+  +  +L +A + GG+ ++       
Sbjct: 65  HLLDYPRRKPGPPCILILTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QT
Sbjct: 125 TNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL       L N     V+   S  E  +      +A  ++    L     
Sbjct: 185 LLFSATLEGELLVDFAERLLNDPVK-VDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +  GI+F  ++++   +  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 244 ETEKVTRGIVFVRRREDAREVSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPPLE 383
           ++  E+  K   L G      PP +
Sbjct: 364 KRYTEEILKARILAGLEPRTKPPKD 388


>gi|327439299|dbj|BAK15664.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 481

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 142/455 (31%), Positives = 232/455 (50%), Gaps = 31/455 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  LSP++  A+ D  Y  PT +Q K +P  L+  D+   AQTG+GKTA+F +P+  
Sbjct: 4   NFNEFPLSPELQNALKDLDYSTPTEVQQKVLPHALKEQDLIVKAQTGSGKTAAFAIPICE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +E    +   P+ L+L PTRELA QV + F   G+   +    L G  PF  Q  +L++
Sbjct: 64  NIEWIENK---PQALVLTPTRELAVQVKEEFTNIGRYKRIKATALYGKQPFRYQQDELKQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              + + TPGR+LDH  +G L ++ I  +V+DEAD ML+MGFI  ++ I + V      +
Sbjct: 121 KTHIAVGTPGRVLDHIEKGTLKLDKIRYVVLDEADEMLNMGFIEQVEAILAHVEHREVMM 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ + ++K++ N+L       V+    + E       A      ++     + +  
Sbjct: 181 LFSATVPESIKKLASNYLN----DPVDIEVQSEEAAPKIEHAVIEVQDEEKTAAVEKIAV 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     IIFC  K  V  L   L  + +SV  +HG +DQ +R+ +++++K G  + +VA
Sbjct: 237 VENPDTCIIFCRTKDRVDALHDYLYDREYSVDKLHGGMDQSTRLLVMNDYKRGDFRYLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++  V N+D+P   E Y+HR GRTGRAG+ GKA T V   +   +  IE
Sbjct: 297 TDVAARGIDIENISLVINYDLPMEKEAYVHRTGRTGRAGKEGKAVTFVTPFEHDFLAGIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           +LI   +               K+D+  H        +  K+  FD++ ++   +K    
Sbjct: 357 ELIGFTIT--------------KVDLPTHE------EVEAKAEAFDKKMQSRPQKKKQKN 396

Query: 422 LKESEKISKLQ----QDIQENDADSLGFRGNMPAF 452
            K    I+KL     +  +    D +G    +P  
Sbjct: 397 AKVDANITKLYFNGGKKKKLRAVDFVGTIAKIPGM 431


>gi|327393211|dbj|BAK10633.1| putative ATP-dependent RNA helicase RhlE [Pantoea ananatis AJ13355]
          Length = 449

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 160/390 (41%), Positives = 235/390 (60%), Gaps = 8/390 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLSGRDLLASAQTGTGKTAGFTLPLL 60

Query: 61  TI--LEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                  G  R R P    IL PTRELAAQV +N  +Y K   L   ++ GG+    Q  
Sbjct: 61  QKLSANTGAVRGRRPVRALILTPTRELAAQVGENVVEYSKYLPLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ +E+LV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLVHQNAVDLSQVEVLVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++E  L NP+++EV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTASEQV---SQQVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK G I+
Sbjct: 238 QLIGEGNWQQVLVFTRTKHGANHLAEQLGKDGITAAAIHGNKSQGARTRALADFKSGAIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN AE+Y+HRIGRTGRA   G A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGVALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWL--NGDLSSLNPPLEKI 385
             IE+L+++++  L   G     +   E I
Sbjct: 358 RDIERLLKREIPRLAVPGYEPDPSIKAEPI 387


>gi|288870006|ref|ZP_06112545.2| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM
           13479]
 gi|288868832|gb|EFD01131.1| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM
           13479]
          Length = 561

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 131/380 (34%), Positives = 217/380 (57%), Gaps = 9/380 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L L  +++ AV D G+ + +PIQ + IP+ ++  D+ G AQTGTGKTA+F +P+L
Sbjct: 4   LRFDELQLDERILRAVADMGFEEASPIQAQAIPVQMEGRDIIGQAQTGTGKTAAFGIPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++    +++      L PTRELA QVAD   +  K  +    L I  G     Q + L
Sbjct: 64  QKVDPKSKKLQAIA---LCPTRELAIQVADEIRRLAKYMHGVKVLPIYGGQDIVKQIRSL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  ++I TPGR++DH  R  +  ++I  +V+DEAD ML+MGF+  ++ I S +P  RQ
Sbjct: 121 KDGTQIIIGTPGRVMDHMRRKTVKFDHIHTVVMDEADEMLNMGFLEDMETILSQLPEDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++FSATM   +  ++  F + P  ++V     T   +   +     +   +        
Sbjct: 181 TVMFSATMPQAIADIAHKFQKEPVTVKVVKKELTVPKVTQYYYEVKPKTKVEVMCRLL-- 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  ++FCN KK V  L  +L+ +G+    +HG++ Q  R +++++F+ G   ++
Sbjct: 239 -DMYAPKLSVVFCNTKKGVDELVQALQGRGYFAEGLHGDLKQIQRDRVMNSFRNGRTDIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G AF+ V  +++  +  
Sbjct: 298 VATDVAARGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGREGIAFSFVVGKEVYKLRD 357

Query: 360 IEKLIEKKVDWLNGDLSSLN 379
           I++  + K+  +   + SLN
Sbjct: 358 IQRYCKTKI--IPQAIPSLN 375


>gi|241662052|ref|YP_002980412.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12D]
 gi|240864079|gb|ACS61740.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
          Length = 565

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 158/395 (40%), Positives = 234/395 (59%), Gaps = 13/395 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY +PTPIQ + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMPRTLIL--------EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
             L   +         +          PTRELAAQV ++   YGK   L   ++ GG+  
Sbjct: 61  HRLSASQPNKVQTPQGMRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q   L+RG D+++ TPGR+LDH  +  + +++IE+LV+DEADRMLDMGFI  I+ I +
Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           ++P  RQ LLFSAT +D+++++++  L  P  IEV   ++TAET+E        +  ++ 
Sbjct: 181 ILPPKRQNLLFSATFSDDIRELADRLLDKPALIEVARRNTTAETVEQRIYPVDRERKREL 240

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                 L   +     ++F   K     L   L + G    AIHGN  Q +R + L+ FK
Sbjct: 241 ---LAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALTEFK 297

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT++++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  +
Sbjct: 298 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 357

Query: 353 DIKHIDAIEKLIEKKVDW--LNGDLSSLNPPLEKI 385
           +   +  IE+LI++++    L G     +   E I
Sbjct: 358 EHGLLRDIERLIKRELPRTVLEGFEPDPSIAAEPI 392


>gi|209517599|ref|ZP_03266438.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209502012|gb|EEA02029.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 510

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 164/373 (43%), Positives = 229/373 (61%), Gaps = 8/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+P ++ A+ ++GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 34  TFDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L    +    P        IL PTRELA QVA N + Y K+  L  A++ GG+    Q+
Sbjct: 94  RLLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQS 153

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++L RG ++LI TPGR+LDH  +    +  +++LV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 154 EQLRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPK 213

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   +STA  +                +  
Sbjct: 214 ERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEVAEGDKTGAVVKL 273

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +  +K  I+FCN K     L  SLE+ G    AIHG+  Q  RM+ L  FK G +
Sbjct: 274 ---IRERGLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQSERMQALDAFKRGEV 330

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 331 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 390

Query: 357 IDAIEKLIEKKVD 369
           +  IEKLI++ +D
Sbjct: 391 LADIEKLIKRPLD 403


>gi|121715524|ref|XP_001275371.1| RNA helicase (Dbp), putative [Aspergillus clavatus NRRL 1]
 gi|134034064|sp|A1C6C4|DBP2_ASPCL RecName: Full=ATP-dependent RNA helicase dbp2
 gi|119403528|gb|EAW13945.1| RNA helicase (Dbp), putative [Aspergillus clavatus NRRL 1]
          Length = 549

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 129/380 (33%), Positives = 209/380 (55%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ +PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 126 TFDEAGFPQYVLSEVKSQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 185

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 186 HINAQPLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQIRDL 245

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 246 SRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQ 305

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T ++SAT   E+++++ +FL +  ++ + +   +A       V   + + K+  +++ L 
Sbjct: 306 TCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLE 365

Query: 240 QSQDTMKNGIIFCNQKKN-VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   N I+     K     +   L + G+   +IHG+  Q+ R  +L+ FK G   +
Sbjct: 366 KIMEDRSNKILIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKAGKSPI 425

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ D+ HV N+D PN +E+YIHRIGRTGRAG  G A T    ++ K   
Sbjct: 426 MVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSKQAR 485

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    ++  L+ +
Sbjct: 486 DLVTILTEAKQQIDPRLAEM 505


>gi|325915753|ref|ZP_08178055.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538017|gb|EGD09711.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
          Length = 461

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 168/466 (36%), Positives = 247/466 (53%), Gaps = 13/466 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PT IQ + IPLVL  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      V  PR     IL PTRELA QV D+   Y K   +  A++ GG+    Q  
Sbjct: 61  QHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+LI  PGR++DH  R  + ++ IE+L++DEADRMLDMGF+P I+ I + +P  
Sbjct: 121 TLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180

Query: 178 RQTL-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +   LFSAT  + +++++  F++NP +I+V   ++ AE+I H          +   L  
Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               S+   +  ++F   K     L   LEK G    AIHGN  Q  RM+ LS+FK G +
Sbjct: 241 LAQDSR---EQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LVA+++ K 
Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  I +++ + V+    D+    P    I        R   P   ++      ++ +   
Sbjct: 358 LRQIVRMLGRDVEI--RDVPGYEPQT-PIRWGNSAPGRAEQPGGDRAPRKSHARRPHGDA 414

Query: 417 KSHIPLKESEKISKLQQDI---QENDADSLGFRGNMPAFMLPKNRG 459
                     K    Q++    Q N     G R +      P NRG
Sbjct: 415 PRQAHAHAGPKKPGGQRNAGPRQANAGAGAGRRDSRGGAGRPANRG 460


>gi|78186849|ref|YP_374892.1| DEAD/DEAH box helicase-like [Chlorobium luteolum DSM 273]
 gi|78166751|gb|ABB23849.1| DEAD/DEAH box helicase-like protein [Chlorobium luteolum DSM 273]
          Length = 418

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 159/420 (37%), Positives = 238/420 (56%), Gaps = 5/420 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L +   ++ A+ + GY  PTPIQ + IPL+L+  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MKFSSLHIIEPILRALEEEGYTHPTPIQTEAIPLILKGSDLLGCAQTGTGKTAAFAIPIL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 K     R  R+LI+ PTRELA Q+ ++F  YG++  LT  ++ GG+    Q   
Sbjct: 61  QLLRERKAIDGKRKIRSLIVTPTRELAIQIGESFSAYGRHTGLTNTVIFGGVGQNPQVNA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+LD  N+G L +++IEILV+DEADRMLDMGFI  I+ I + VP  R
Sbjct: 121 LRRGVDILVATPGRLLDLMNQGILHLHDIEILVLDEADRMLDMGFIHDIRKILAAVPKER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+Q++S   L++P ++ V   SST + I                +    
Sbjct: 181 QSLFFSATMPPEIQRLSSTILRHPAKVSVTPVSSTVDIINQQIYFVDRGNKSGLLVHLL- 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                 ++  ++F   K     +   LEK   +  AIHGN  Q +R + LSNFK    ++
Sbjct: 240 --QNPDIRTVLVFTRTKHGADKVVRHLEKHNITAEAIHGNKAQNARQRALSNFKSQKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+  V N+++ N AE Y+HRIGRTGRAG  G A +    E+ +++ 
Sbjct: 298 LVATDIAARGIDVDDLEWVINYEMSNIAETYVHRIGRTGRAGSAGTAISFCDAEEKEYLR 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEKLI K +  ++     L        I +    R  +P P+       +++  ++ K 
Sbjct: 358 DIEKLIAKSIPVVDSHPFPLMDHNPVKIIKEQGRGRSGHPAPRPQGNARPKQRPANAGKR 417


>gi|167562078|ref|ZP_02354994.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis EO147]
          Length = 408

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 169/398 (42%), Positives = 233/398 (58%), Gaps = 22/398 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+ +++ A+ D GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L    +    P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q 
Sbjct: 72  RLLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG +VLI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 AELRRGVEVLIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   ++TA  +            +   +  
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNATATNVTQIVYDVAEGDKQAAVVKL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                   +K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 ---IRDRALKQVIVFCNSKIGASRLARQIERDGIVASAIHGDRSQSERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIVELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLE--KIDIAQHNH 392
           +  IEKLI++ +            PLE  ++D+ +H H
Sbjct: 369 LADIEKLIKRAL------------PLEALELDLPRHRH 394


>gi|89094261|ref|ZP_01167203.1| DEAD/DEAH box helicase-like [Oceanospirillum sp. MED92]
 gi|89081516|gb|EAR60746.1| DEAD/DEAH box helicase-like [Oceanospirillum sp. MED92]
          Length = 592

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 142/373 (38%), Positives = 223/373 (59%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+LG++  V+  + + GY  P+PIQ  +IP +L+  D+ GIAQTGTGKTA+F LP+L
Sbjct: 7   LSFAELGIAEPVLKVLDEIGYETPSPIQAASIPHLLEGRDLLGIAQTGTGKTAAFSLPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + L     + R  + LIL PTRELA QVA+  + Y +N      L I  G  +++Q ++L
Sbjct: 67  SRL---NLKSRNTQLLILAPTRELAIQVAEACQTYARNLPDFHVLPIYGGQAYDSQLRQL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA V++ TPGR++DH  RG L ++ ++ LV+DEAD ML MGFI  +  +    P  RQ
Sbjct: 124 KRGAQVVVGTPGRVMDHMRRGSLKLDKLQALVLDEADEMLRMGFIDDVNWVLEHTPEDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  +++ V+E  L +P  + +   ++TA TI   ++                +
Sbjct: 184 IALFSATMPAQIKSVAEAHLNDPAEVRIKAKTATATTITQKYLRVSGNQKLDAVTRILEM 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q+ D M   ++F   K   V L   L  +G++  A++G+I Q  R + +   K G I ++
Sbjct: 244 QAFDAM---LVFVRTKSATVELAEKLSARGYACEALNGDISQNLRERTIDKLKRGQIDIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+ ARGLD+  + HV N+D+P   E+YIHRIGRTGRAGR G+A   V+  + + + +
Sbjct: 301 IATDVVARGLDVERISHVLNYDIPYDTESYIHRIGRTGRAGREGEAILFVSPREQRMLKS 360

Query: 360 IEKLIEKKVDWLN 372
           IE+   +K++ + 
Sbjct: 361 IERATRQKIESMQ 373


>gi|313672966|ref|YP_004051077.1| dead/deah box helicase domain protein [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939722|gb|ADR18914.1| DEAD/DEAH box helicase domain protein [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 528

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 138/360 (38%), Positives = 214/360 (59%), Gaps = 7/360 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
            F +LGLS  V+ A+   G+ +PTPIQ   IP +LQ   D+ G AQTGTGKTA+F LP++
Sbjct: 6   KFKELGLSENVLKALSKKGFEEPTPIQELVIPKLLQGERDIVGQAQTGTGKTAAFGLPLI 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+    +    + ++L PTRELA QVA+          L +  + GG   E Q ++LE
Sbjct: 66  ELLDD---KSPFVQAIVLTPTRELALQVAEEMNSLKGKKRLNIVPIYGGQSMELQLRRLE 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             A +++ TPGR++DH NR  L +N ++ +V+DEAD ML+MGFI  I+ I       ++ 
Sbjct: 123 NNAHIVVGTPGRVIDHINRKTLRLNKLKFMVLDEADEMLNMGFIEDIEEIIKHTNEDKRM 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+  +++ ++++ + + V T   T E  E  +     +   +     + ++
Sbjct: 183 LLFSATMPKEILNIAKKYMKDYEVLAVKTKQLTTELTEQIYFQVREEDKFEALCRIRDME 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +     G+IFC  K +V  +C+ L  +G++  A+HG+I Q  R +IL  FK   I ++V
Sbjct: 243 KEFY---GLIFCRTKVDVDTVCNRLIDRGYNAEALHGDISQYQRERILKRFKAKQINMLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T V  E+ + +  I
Sbjct: 300 ATDVAARGIDISDLTHVINYSLPQDPESYVHRIGRTGRAGKEGTAITFVTPEEYRKLLYI 359


>gi|167823349|ref|ZP_02454820.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 9]
 gi|226195327|ref|ZP_03790916.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
 gi|225932529|gb|EEH28527.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
          Length = 478

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 167/419 (39%), Positives = 239/419 (57%), Gaps = 18/419 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+ +++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   ++ A T+            +   +  
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                  ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 ---IRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           +  IEKLI++ +      L +L      +D+ +H H  +     +        ++ ++S
Sbjct: 369 LADIEKLIKRTLS-----LETLA-----LDLPRHRHDDRGGRRERDRDERRGARRAHAS 417


>gi|167748398|ref|ZP_02420525.1| hypothetical protein ANACAC_03142 [Anaerostipes caccae DSM 14662]
 gi|167652390|gb|EDR96519.1| hypothetical protein ANACAC_03142 [Anaerostipes caccae DSM 14662]
          Length = 466

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 143/367 (38%), Positives = 224/367 (61%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L ++ K++ AV + G+   +PIQ   IP+VL+  D+ G AQTGTGKTA+F +P+L  
Sbjct: 15  FDELNINDKILKAVKEMGFEAASPIQGAAIPVVLEGRDIVGQAQTGTGKTAAFGIPLLEK 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    +V+ P+ +IL PTRELA QVAD   K  K  +    L I  G     Q + L+ 
Sbjct: 75  MDT---KVKKPQAMILCPTRELAIQVADEIRKLAKFMHGAKVLPIYGGQNITNQIRSLKT 131

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA++++ TPGRI+DH  R  L + +++++V+DEAD ML+MGF   I++I   VP  RQTL
Sbjct: 132 GANIIVGTPGRIMDHMRRHTLKLEDLKMVVLDEADEMLNMGFREDIESILKEVPEERQTL 191

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +  +++ + ++ K I+V     T   IE  +        K+   +   L  
Sbjct: 192 LFSATMPKAILDITKKYQKDSKLIKVVRKELTVPNIEQYYYEVRP---KQKVEVLCRLLD 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + K  I+FCN K+ V  +   L+ +G+    IHG++ Q  R +++ +F+ G + ++VA
Sbjct: 249 MHSPKLSIVFCNTKRMVDEVTGELKGRGYFAEGIHGDLKQSQRDRVMKSFRGGRVDILVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G AFT VA ++I  +  ++
Sbjct: 309 TDVAARGIDVDDVDAVFNYDLPQDDEFYVHRIGRTGRAGRTGNAFTFVAGKEIYKLRDVQ 368

Query: 362 KLIEKKV 368
           +  + K+
Sbjct: 369 RYCKTKI 375


>gi|154247132|ref|YP_001418090.1| DEAD/DEAH box helicase domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154161217|gb|ABS68433.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus
           Py2]
          Length = 559

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 171/491 (34%), Positives = 263/491 (53%), Gaps = 33/491 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++LGL+  +V A+ +A +V PTPIQ + IP +L   D+ GIAQTGTGKTA+F LP+L 
Sbjct: 38  SFSNLGLAEPIVRALTEAQHVTPTPIQAEAIPQILAGRDLIGIAQTGTGKTAAFALPILD 97

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L +   R         +L PTREL+ Q+ +NFEK+G++ N++V+L IGG+P   Q + L
Sbjct: 98  RLVRHPHRPEPKSVRALVLSPTRELSGQIVENFEKFGRHANISVSLAIGGVPMGRQIRAL 157

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DVL+ TPGR++D      + ++ +E+LV+DEAD+MLDMGF+  I+ I   +P  R 
Sbjct: 158 SRGVDVLVATPGRLIDLVENHAVKLDQVEVLVLDEADQMLDMGFVHAIRAIVRRLPHKRH 217

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +L FSATM   + +++ + L++P R+ V   + TA+ +E   +            L   +
Sbjct: 218 SLFFSATMPHAIAELAGSMLRDPVRVAVTPVAKTADRVEQRVILVDKANK---GQLLAEV 274

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S + +   ++F   K     +   L K G +  AIHGN  Q  R ++L+ F+EG I+ +
Sbjct: 275 LSTEDIDRALVFSRTKHGADKVVRVLAKAGIAAEAIHGNKSQNQRDRVLAAFREGKIRTL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+  V HV NFD+PN  E+Y+HRIGRT RAGR G A +    E+   + +
Sbjct: 335 IATDIAARGIDVTGVSHVINFDLPNVPESYVHRIGRTARAGREGIAISFCDHEERAFLRS 394

Query: 360 IEKLIEKKVDWLNGDLSSLN---PPLEKI--DIAQHNHAR--------KNNPIPQKSTGF 406
           IEKLI+ ++   +   +      P LE I  D       R        + NP  Q+    
Sbjct: 395 IEKLIKMQLPSSDRRGAGTRFAVPELEPIILDERDETSERSDYIGRSGRQNPRGQRPRHG 454

Query: 407 DRRKKNYSSQ------------KSHIPLKESEKISKLQQDIQE-NDADSLGFRGNMPAFM 453
           D R     S+            ++H P  E        +   +   A   G R   PA  
Sbjct: 455 DERSGEGRSRAPRSEEGRPQAARAHQPRGEGRPAGGRPEGRPDAGGAQGAGHRAGQPA-- 512

Query: 454 LPKNRGKLNDK 464
             + RG+  ++
Sbjct: 513 RAEGRGQRTER 523


>gi|319775651|ref|YP_004138139.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
 gi|317450242|emb|CBY86458.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
          Length = 444

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 137/398 (34%), Positives = 211/398 (53%), Gaps = 6/398 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP + 
Sbjct: 5   QFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++       
Sbjct: 65  HLLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QT
Sbjct: 125 TNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL       L N     V+   S  E  +      +   ++    L     
Sbjct: 185 LLFSATLEGELLVDFAERLLNDPVK-VDAEPSRRERKKINQWYYHPDSNEHKIKLLARFI 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +  GI+F  ++++   L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 244 ETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPPL--EKIDIAQHNHAR 394
           ++  E+  K   L G      PP   E   +++   AR
Sbjct: 364 KRYTEEILKARILAGLEPRTKPPKDGEVKSVSKKQKAR 401


>gi|312129179|ref|YP_003996519.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311905725|gb|ADQ16166.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 373

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 151/373 (40%), Positives = 225/373 (60%), Gaps = 3/373 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +L LS  +  A+ + GY   TPIQ + IP VLQ  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MNFENLNLSAPLAQALQEYGYTSLTPIQEQAIPKVLQGQDLLGCAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + +     R  R LIL PTRELA Q+ DNF+ Y K+  ++ A++ GG+    Q  +L+
Sbjct: 61  ERILQNPKNKRQIRVLILTPTRELAIQIGDNFKAYSKHIKISHAVIFGGVNQNKQVNQLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G ++LI TPGR+LD  ++G + +N ++ LV+DEADRMLDMGF+  ++ I + +P  RQT
Sbjct: 121 QGVEILIATPGRLLDLMSQGFVRLNGLDTLVLDEADRMLDMGFVHDVKKILTKIPTERQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   ++K + + L NP  +EV   SSTAET+       Y    K+   L   + 
Sbjct: 181 LFFSATMPQSIRKFAASILTNPAYVEVTPVSSTAETV---KQGVYFVDKKEKTPLLINIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              +    +IF   K     L   L K G    AIHGN  Q +R + L +FK   + +++
Sbjct: 238 KDQSTDRTLIFTRTKHGADKLVKQLGKVGIPAAAIHGNKSQNARQRALEDFKSSRLNVLI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++ +V N+++PN  E Y+HRIGRTGRAG  G A +   +E++     I
Sbjct: 298 ATDIAARGIDIEELPYVINYELPNVPETYVHRIGRTGRAGAEGVAVSFCDQEELNDFKNI 357

Query: 361 EKLIEKKVDWLNG 373
           +KL   +++ L+ 
Sbjct: 358 QKLTGIRIEVLSP 370


>gi|66767801|ref|YP_242563.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188990915|ref|YP_001902925.1| Cold-shock DEAD-box protein A [Xanthomonas campestris pv.
           campestris str. B100]
 gi|66573133|gb|AAY48543.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167732675|emb|CAP50869.1| Cold-shock DEAD-box protein A [Xanthomonas campestris pv.
           campestris]
          Length = 642

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 157/462 (33%), Positives = 251/462 (54%), Gaps = 23/462 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV   GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 11  FADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
            +  + +   P+ L+L PTRELA QVA+ F+KY +       L +  G P+  Q   L+R
Sbjct: 71  ADLNQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P  + +   ++T+  I   +      +          ++ 
Sbjct: 188 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEP 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   IIF   K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++VA
Sbjct: 248 FDGM---IIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HV N+D+P   E+Y+HRIGRTGRAGR+G A   V   +   + AIE
Sbjct: 305 TDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRAIE 364

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           +   + ++ +   L S++  +    +A+            +   +    + Y S+ +   
Sbjct: 365 RATRQPIEEMQ--LPSVDA-VNDTRVARFMTRITETLAGGQIEMYRDLLQRYESENNVPA 421

Query: 422 LKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
           +  +  ++KL              +G+ P  + P  RG   D
Sbjct: 422 IDIAAAMAKL-------------LQGDAPFLLTPPVRGARED 450


>gi|56478694|ref|YP_160283.1| ATP-dependent RNA helicase DeaD [Aromatoleum aromaticum EbN1]
 gi|56314737|emb|CAI09382.1| ATP-dependent RNA helicase DeaD [Aromatoleum aromaticum EbN1]
          Length = 658

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 145/372 (38%), Positives = 222/372 (59%), Gaps = 6/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L L   ++ A+ + GY  P+PIQ   IP +L  HD+ G AQTGTGKTA+F LP+L 
Sbjct: 45  SFAQLDLRAPLLDALSEIGYETPSPIQAICIPHLLAGHDLLGEAQTGTGKTAAFALPLLD 104

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            L+     V+ P+ L+L PTRELA QVA+ F++Y KN      L + G      Q ++L 
Sbjct: 105 RLDLA---VKNPQVLVLAPTRELAIQVAEAFQRYAKNLPGFHVLPVYGGQSMVVQLRQLA 161

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  R  L ++++  LV+DEAD ML MGFI  ++ I    P  RQT
Sbjct: 162 RGAHVIVGTPGRVMDHIERKSLNLDSLTTLVLDEADEMLRMGFIDDVEWILQHTPAERQT 221

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM D +++V+  +L+ P+ +++   ++T  T    +      +      L ++L+
Sbjct: 222 ALFSATMPDAIRRVAHRYLREPREVKIKASTTTVSTTRQRYCQISVAHK--LDALTRILE 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     IIF   K   V L   LE +G+S  A++G++ Q+ R +++   K G + ++V
Sbjct: 280 VEEDFDAAIIFVRTKTATVELADKLEARGYSAAALNGDMTQQLRERVIEQLKGGQLDIVV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P   E Y+HRIGRTGRAGR G A   VA  +++ +  I
Sbjct: 340 ATDVAARGLDVSRISHVINYDIPYDTEAYVHRIGRTGRAGRTGSAILFVAPREMRMLKVI 399

Query: 361 EKLIEKKVDWLN 372
           E+   + ++ L 
Sbjct: 400 ERATRQPIEALQ 411


>gi|284044842|ref|YP_003395182.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
 gi|283949063|gb|ADB51807.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
           14684]
          Length = 590

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 137/394 (34%), Positives = 211/394 (53%), Gaps = 13/394 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L  +++ A+   GY +PTPIQ + IP +L+  D+ G A TGTGKTA+F LP+L 
Sbjct: 16  TFADLALRRELLDALTGLGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAAFALPILQ 75

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +E GR     P  L+L PTRELA QV++   +YG++    V  + GG P   Q   L+R
Sbjct: 76  RMEPGR-SAIGPLALVLVPTRELAVQVSEALHRYGRSLGARVLPIYGGQPIGRQLNALKR 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR+LDH +R  L ++ + I+V+DEAD MLDMGF   I++I +  P   +  
Sbjct: 135 GVDVVVGTPGRVLDHISRNTLRLDELRIVVLDEADEMLDMGFAEDIESILAETPDGGRQT 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +               +          ++A        + Y             +  
Sbjct: 195 VLFSATMPPRIDRIARAHLSDPVRIEIARETSAGDTPLVRQSAYVVARAHKPAALGRVLD 254

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            ++    I+FC  +  V  L  +L  +G+   A+HG + Q  R ++++  + GT  L+VA
Sbjct: 255 VESPTAAIVFCRTRDEVDQLTETLNGRGYRAEALHGGMTQEQRDRVMARLRNGTADLLVA 314

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+DVP+  E+Y+HRIGR GRAGR G A TL    + +++  IE
Sbjct: 315 TDVAARGLDVEQLTHVVNYDVPSSPESYVHRIGRVGRAGREGAAITLAEPREHRYLKTIE 374

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           ++ ++++             +EKI      HARK
Sbjct: 375 RVTKQRI------------AIEKIPTVADLHARK 396


>gi|253582317|ref|ZP_04859540.1| ATP-dependent RNA helicase [Fusobacterium varium ATCC 27725]
 gi|251835856|gb|EES64394.1| ATP-dependent RNA helicase [Fusobacterium varium ATCC 27725]
          Length = 527

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 129/368 (35%), Positives = 212/368 (57%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F  LGL  K + A+   GY KPTPIQ  TIP +L    D+ G AQTGTGKTA+F LP+L
Sbjct: 6   EFKKLGLGEKTIKALSKKGYEKPTPIQALTIPALLDGEKDIIGQAQTGTGKTAAFSLPIL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E G+      + ++L PTRELA QVA+          + +  + GG   E Q ++L+
Sbjct: 66  ERFEPGKV----VQAIVLAPTRELAIQVAEEMNSLANGKKIRITPVYGGQSIEFQIRQLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TPGR++D  +R  + ++N++  ++DEAD ML+MGF+  ++ I       ++ 
Sbjct: 122 KGTDIIVGTPGRVMDLMDRKLIKLDNLKYFILDEADEMLNMGFLEDVEKILESTNDDKRM 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM +E+ KV++  +++ + + V T   T +         +  + +        + 
Sbjct: 182 LFFSATMPNEILKVAKKHMRDYEVLAVKTRELTTDLT---DQIYFEVHERDKFEALCRII 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  GI+FC  K +V ++   L  +G+    +HG+I Q  R   L  FK   I ++V
Sbjct: 239 DLTKDFYGIVFCRTKNDVNDVVGKLNDRGYDAEGLHGDISQNYREVTLKRFKAKKINVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV N+ +P  AE+Y+HRIGRTGRAG+ G A T +  ++ + +  I
Sbjct: 299 ATDVAARGIDVNDLSHVINYSIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 358

Query: 361 EKLIEKKV 368
           +K+++ ++
Sbjct: 359 QKIVKTEI 366


>gi|21232073|ref|NP_637990.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|21113816|gb|AAM41914.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 642

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 144/371 (38%), Positives = 221/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV   GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 11  FADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
            +  + +   P+ L+L PTRELA QVA+ F+KY +       L +  G P+  Q   L+R
Sbjct: 71  ADLNQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P  + +   ++T+  I   +      +          ++ 
Sbjct: 188 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEP 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   IIF   K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++VA
Sbjct: 248 FDGM---IIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HV N+D+P   E+Y+HRIGRTGRAGR+G A   V   +   + AIE
Sbjct: 305 TDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRAIE 364

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 365 RATRQPIEEMQ 375


>gi|114048383|ref|YP_738933.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113889825|gb|ABI43876.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 433

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 157/438 (35%), Positives = 245/438 (55%), Gaps = 12/438 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F      P+++ A+ D GY K TPIQ + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             + +  +          IL PTRELAAQVADN E Y K  N +V  + GG+  E Q +K
Sbjct: 61  QKMVENPSETLKSNARVLILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RGAD+++ TPGR+L+H     L +++++ LV+DEADRMLDMGF   IQ I   V   R
Sbjct: 121 LKRGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFNADIQKILQAVNKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  ++K++ + +  P+ I  +  ++TA+T+         +  ++       
Sbjct: 181 QNLLFSATFSSAVKKLANDMMVKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F   +     L   L   G     +HG   Q SR + L  F  G +++
Sbjct: 239 -IGKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFMSGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDIP + +V NFD+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLA 357

Query: 359 AIEKLIEKKVDWLN---GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            IEKLI +K+  +     ++ S +  L+++   + + A+K   +   S      K   S 
Sbjct: 358 DIEKLIGQKIRRITVPGYEVGSRDLLLKQLQT-RRSFAKKQQRLDNVSEQIVAEK---SM 413

Query: 416 QKSHIPLKESEKISKLQQ 433
           Q   + +K  +  SK ++
Sbjct: 414 QGRRVKMKVGQAPSKAKK 431


>gi|145222813|ref|YP_001133491.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           gilvum PYR-GCK]
 gi|145215299|gb|ABP44703.1| ATP-dependent RNA helicase CsdA [Mycobacterium gilvum PYR-GCK]
          Length = 559

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 148/384 (38%), Positives = 226/384 (58%), Gaps = 8/384 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL + P V+ AV D GY  P+PIQ  TIP +L+  DV G+AQTGTGKTA+F +P+L
Sbjct: 13  LTFADLQIHPAVLKAVADVGYESPSPIQAATIPAILEGSDVVGLAQTGTGKTAAFAIPIL 72

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + ++      R  + L+L PTRELA QVA+ F +YG    + V  + GG  +  Q   L+
Sbjct: 73  SKIDT---DSRNTQALVLAPTRELALQVAEAFGRYGAQLRVNVLPIYGGSSYVPQLAGLK 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  +G L +++++ LV+DEAD ML MGF   ++ I +  P  +Q 
Sbjct: 130 RGAQVVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQV 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++K++  +L +P  + V + + TAE I   +                  +
Sbjct: 190 ALFSATMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYFLVSYPRKMDALTRLLETE 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M   +      + V     +   +GF+  AI+G+I Q  R + ++  K+GTI ++V
Sbjct: 250 QGDAMIVFVRTKQATEEVAEKLRA---RGFAASAINGDIPQAVRERTIAQLKDGTIDILV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV NFD+P+  E+Y+HRIGRTGRAGR G A   V   +   + AI
Sbjct: 307 ATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLGAI 366

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E++  +K+  +  +L S++   EK
Sbjct: 367 ERVTRQKL--VESELPSVDDVNEK 388


>gi|329122297|ref|ZP_08250885.1| ATP-dependent RNA helicase SrmB [Haemophilus aegyptius ATCC 11116]
 gi|327473858|gb|EGF19275.1| ATP-dependent RNA helicase SrmB [Haemophilus aegyptius ATCC 11116]
          Length = 444

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 138/419 (32%), Positives = 216/419 (51%), Gaps = 17/419 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP + 
Sbjct: 5   QFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++       
Sbjct: 65  HLLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QT
Sbjct: 125 TNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL       L N     V+   S  E  +      +A  ++    L     
Sbjct: 185 LLFSATLEGELLVDFAERLLNDPVK-VDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +  GI+F  ++++   L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 244 ETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           ++  E+ +      L+SL P             R   P   +     +++K    +K  
Sbjct: 364 KRYTEEILKA--RILASLEP-------------RTKPPKDGEVKSVSKKQKARIKEKRE 407


>gi|127511883|ref|YP_001093080.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126637178|gb|ABO22821.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 432

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 159/436 (36%), Positives = 244/436 (55%), Gaps = 16/436 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P+++ A+ + GY K TPIQ + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFAPEILHAISECGYQKMTPIQKEAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +    +  +   T   IL PTREL AQVADN ++Y +   ++V  + GG+  + Q  K
Sbjct: 61  QKMFDSPSDTQRSNTRALILAPTRELVAQVADNIKQYSRYLPISVLTVYGGVKMDTQAAK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +++GAD+++ TPGR+L+H     L ++N++ LV+DEADRMLDMGFI  IQ I   V   R
Sbjct: 121 VKKGADIIVATPGRLLEHLQACNLNLSNVDFLVLDEADRMLDMGFITDIQKILQQVNRDR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  +++++   L  PK I V+  ++TA T+         +  ++       
Sbjct: 181 QNLLFSATFSSAVKQLANEMLVKPKLIAVDKQNTTAVTVSQVVYPVEQRRKRELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F   ++    L   L   G     +H    Q +R + L  FKEG ++ 
Sbjct: 239 -IGKKNWQQVLVFTATREAADVLVKELNLDGIPSAVVHSEKAQGNRRRALREFKEGKVRA 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDIP++ +V NFD+P  AE+Y+HRIGRTGRAGR G A +LV++E+ + + 
Sbjct: 298 LVATEVAARGLDIPELEYVVNFDLPFLAEDYVHRIGRTGRAGRTGVAISLVSREEERTLA 357

Query: 359 AIEKLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNN----PIPQKSTGFDR 408
            IEKLI  K+  +       G    L   L+K         R +N     I +K+ G  R
Sbjct: 358 DIEKLIGNKIRRITIPGYEVGSRDLLIKQLQKRRSFAKKQQRSDNVGAQVIAEKNMG-AR 416

Query: 409 RKKNYSSQKSHIPLKE 424
           R K  +S  + I  ++
Sbjct: 417 RVKVKNSSNAKIKKQK 432


>gi|258645792|ref|ZP_05733261.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
           DSM 15470]
 gi|260403163|gb|EEW96710.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
           DSM 15470]
          Length = 510

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 132/360 (36%), Positives = 219/360 (60%), Gaps = 6/360 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL P+++ A+ D G+ +PTPIQ  +IP  ++  D+ G AQTGTGKTA+F +P+L 
Sbjct: 4   TFKELGLVPEIMKAIEDMGFEEPTPIQKVSIPAAMEGKDLIGQAQTGTGKTAAFGIPILE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++      + P+ ++L PTRELA Q A+   +  +   +    + GG   E Q + L +
Sbjct: 64  KIDTTE---KGPQAIVLSPTRELAIQSAEEMNRLAQYLPIHALPIYGGQDIERQFRALRK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             ++++ TPGR++DH  RG + +++++ILV+DE D M+DMGFI  I+ I + +P  RQT+
Sbjct: 121 KPNIIVATPGRLMDHMKRGTIDLSHVQILVLDEGDEMVDMGFIDDIRTILAGMPEERQTM 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   +++++E+FL++P  +++   + T + +             +       L  
Sbjct: 181 FFSATMPAPIRELAESFLRDPVLVKIKAATVTIDLV---EQEYIELPDMQKFDCLCRLLD 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  I+F   K+    +  +L+K+G+    +HG++ Q+ R  ++  FKEGTI ++VA
Sbjct: 238 MENPELAIVFVRTKRRADEVTEALKKRGYMAEGLHGDLSQQKRDAVVRQFKEGTIDILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P  +E Y+HR+GRTGRAG+ G A T V   +I  +  IE
Sbjct: 298 TDVAARGLDISGVTHVYNFDMPQDSETYVHRVGRTGRAGQTGLAMTFVVSREIGQLHDIE 357


>gi|193664366|ref|XP_001952053.1| PREDICTED: eukaryotic initiation factor 4A-like [Acyrthosiphon
           pisum]
          Length = 411

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L  +++  +   G+ KP+ IQ + I   ++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 39  NFDEMNLKEELLRGIYGYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTATFSISILQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G          IGG       +KL+ 
Sbjct: 99  QIDTSLNE---CQALILAPTRELAQQIQKVVIALGDFMKADCHACIGGTNVRDDMRKLDT 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G+ V++ TPGR+ D   R  L    I+I V+DEAD ML  GF   I+ +   +    Q +
Sbjct: 156 GSHVVVGTPGRVYDMIARKSLRTQFIKIFVLDEADEMLSRGFKDQIKEVFKFLEEDIQVI 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM +++  VS +F++NP RI V     T E I+  ++    +  K   L       
Sbjct: 216 LLSATMPEDVLDVSTHFMRNPVRILVQKEELTLEGIKQFYINVTKEEWKFDTLCDL--YD 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L  ++  + F+V A+HG +DQR R  I+  F+ G+ ++++ 
Sbjct: 274 TLSITQAVIFCNTRRKVEWLTENMRLKTFTVSAMHGEMDQRQRELIMRQFRSGSSRVLIT 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   + ++D + +  IE
Sbjct: 334 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFITEDDKRAMKDIE 393

Query: 362 KLIEKKVDWLNGDLSSL 378
                 V  +  +++ L
Sbjct: 394 SFYNTHVLEMPQNVADL 410


>gi|86132795|ref|ZP_01051387.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
 gi|85816749|gb|EAQ37935.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
          Length = 425

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 166/418 (39%), Positives = 243/418 (58%), Gaps = 12/418 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ K IP VL+  DV   AQTGTGKTA F LPML
Sbjct: 1   MSFKSLGLSDALLKAVSEKGYTTPSPIQQKAIPKVLEGKDVLASAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L     + R      +L PTRELAAQ+ DN  +Y K  ++   ++ GG+    Q + +
Sbjct: 61  HNLIANPRQGRRKVRALVLTPTRELAAQIYDNVREYSKYVDIKSTVIFGGVNQNPQVRTI 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD  N+G L +++IE LV+DEADRMLDMGFI  I+ +  LVP  RQ
Sbjct: 121 RQGVDILVATPGRLLDLENQGLLSLSDIEFLVLDEADRMLDMGFIHDIKKVLRLVPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT   +++K++ + L NP  +E    ++TAE ++                +    
Sbjct: 181 NLLFSATFNKDIKKLASSILTNPVLVEATPENTTAEKVDQKTYRVDKSRK---TEMLIKF 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      ++F   K     L   L+K G +  AIHGN  Q +R+K L+ FK G I+++
Sbjct: 238 INEGNWDQVLVFTRTKHGANRLSQKLDKAGITSAAIHGNKTQNARVKALAGFKSGKIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + +V N+++PN  E+Y+HRIGRTGRAG  G+A +LV  +++ ++  
Sbjct: 298 VATDIAARGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVAYVRG 357

Query: 360 IEKLIEKKV--DWLNG-----DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           IEKL+ +K+  + L G      L  L     + + A+H   R+N+   + S      K
Sbjct: 358 IEKLLGEKLHSEVLEGFQPTDTLEQLKKEAAE-NKARHQQGRRNSRNSKPSGDKRNDK 414


>gi|282164729|ref|YP_003357114.1| putative ATP-dependent RNA helicase [Methanocella paludicola SANAE]
 gi|282157043|dbj|BAI62131.1| putative ATP-dependent RNA helicase [Methanocella paludicola SANAE]
          Length = 471

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 141/372 (37%), Positives = 211/372 (56%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS   + A+   G+ + TPIQ + IP  L   DV G AQTGTGKTA+F +PM+ 
Sbjct: 3   TFQELSLSNATLKALAGMGFEEATPIQEQAIPAALAGKDVIGQAQTGTGKTAAFGIPMIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++ G   ++     ++ PTRELA QVA+   + G+   +    + GG   + Q   L+R
Sbjct: 63  NIDAGSGDIQGI---VITPTRELAVQVAEELNRIGEFRGIHTLPIYGGQDIKRQINGLKR 119

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR++DH  R K +   NI  +V+DEAD MLDMGFI  I+ I    P  RQT
Sbjct: 120 RPQIIVGTPGRLVDHMMRRKTISLKNIRTVVLDEADEMLDMGFIEDIEEILKRTPEGRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+   ++K++E F+++P+ I + + S T    E    A Y    K    +   L 
Sbjct: 180 LLFSATIPAPIRKLAERFMKDPQTIGIKSKSMTVSGTEQ---AYYEVPEKHKFEVLCRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K+ V  L  +L ++G+    IHG++ Q  R  ++  FKEGT +++V
Sbjct: 237 DVQLPALAIVFVRTKRRVDELTKALGERGYPAEGIHGDLAQSKRDSVMRGFKEGTTEVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N D+P   ++Y+HRIGRTGRAG+ G A T V   ++  +  I
Sbjct: 297 ATDVAARGLDISGVTHVYNLDIPQDPDSYVHRIGRTGRAGKKGTAITFVTPREMGLLRFI 356

Query: 361 EKLIEKKVDWLN 372
           EK+    ++   
Sbjct: 357 EKITRHSIERRP 368


>gi|109898452|ref|YP_661707.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c]
 gi|109700733|gb|ABG40653.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 435

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 167/436 (38%), Positives = 249/436 (57%), Gaps = 21/436 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLSP ++ AV   GY  P+PIQ + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFADLGLSPAILSAVTAKGYTDPSPIQAQAIPAILEGKDIMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +G   R    R L+L PTRELAAQVA +   YGK+  L  A++ GG+    Q  KL
Sbjct: 61  ELLNRGTHARGNQARALVLTPTRELAAQVAASVVDYGKDLPLRSAVVFGGVGINPQMIKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD +N+  +  +++EILV+DEADRMLDMGFI  I+ +  L+P  RQ
Sbjct: 121 RKGVDILVATPGRLLDLYNQNAVRFDDLEILVLDEADRMLDMGFIHDIKKVLKLLPTKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +D+++ +++  + NP  + V+ P++T E +E                    +
Sbjct: 181 NLLFSATFSDDIRALAKGLVNNPVEVSVSPPNTTVEAVEQFVCPVDKNQKTPA---LIRM 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  ++F   K     +   LE +G +  AIHGN  Q +R K L+ FK G ++ +
Sbjct: 238 IKDNDWQQVLVFSRTKHGANRIAKQLEARGITSAAIHGNKSQGARTKALAEFKSGKVRAL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+D+PN AE+Y+HRIGRTGRAG  G+A +LV  ++   +  
Sbjct: 298 VATDIAARGLDISQLPQVVNYDLPNVAEDYVHRIGRTGRAGASGQAISLVTADEFSLLAD 357

Query: 360 IEKLIEKKVDW--LNGDLSSLNPPLEKIDIA------------QHNHARKNNPIPQKSTG 405
           IE+  ++ +    + G       P  ++D              QH   +++    +    
Sbjct: 358 IERFTKQIIPRKGIEGFEPVHALPESRLDSRPIKPKKPKKPRVQHRDGQRSGDNARGHHS 417

Query: 406 FDRRK---KNYSSQKS 418
            +RR    KN S ++S
Sbjct: 418 GNRRGNGPKNASPRRS 433


>gi|229014620|ref|ZP_04171734.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides DSM 2048]
 gi|228746631|gb|EEL96520.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides DSM 2048]
          Length = 464

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 142/410 (34%), Positives = 236/410 (57%), Gaps = 14/410 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS ++V A+   GY  PT +Q + IP+ LQR D+   +QTG+GKTASF +P+  +
Sbjct: 6   FTDYALSKEIVRALTGLGYEHPTEVQGEVIPVALQRKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +++K+S  ++ +P  IE+     T + IEH     +    ++   L + + + 
Sbjct: 183 FSATLPKDVEKLSRTYMDSPTHIEIKATGITTDKIEH---ILFEMREEEKLSLLKDVTTI 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 240 ENPDSCIIFCRTQENVDHVFQQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG +GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIEE 359

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK--NNPIPQKSTGFDRRK 410
            I  ++        +L P  E++   +     K    PI +K    D  K
Sbjct: 360 YIGFEIP------KALAPSKEEVMKGKAVFEEKIHAKPIIKKDKNADLNK 403


>gi|152992584|ref|YP_001358305.1| DEAD-box ATP dependent DNA helicase [Sulfurovum sp. NBC37-1]
 gi|151424445|dbj|BAF71948.1| ATP-dependent RNA helicase, DEAD-box family [Sulfurovum sp.
           NBC37-1]
          Length = 492

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 141/368 (38%), Positives = 214/368 (58%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L   +  AV +AG+ +P+P+Q   IPLVL+ HD+   AQTGTGKTA+F LP++
Sbjct: 1   MKFTDFNLKDTIQAAVAEAGFKEPSPVQKDAIPLVLEGHDMIAQAQTGTGKTAAFGLPIM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++++           L++ PTRELA QV+D   ++GK   L  A + GG  +  Q ++++
Sbjct: 61  SMMKAD----GSVEGLVIVPTRELAMQVSDELFRFGKLSGLKTATVYGGTAYGKQIERIK 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           + + V+                +  N   +V+DEAD MLDMGF+  I+NI + +P  RQT
Sbjct: 117 QASIVVATPGRLQDLL--MSGKIKLNPHFVVLDEADEMLDMGFLDEIKNIFTFLPKERQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSATM + ++K++E  L NPK +   + + +  T        Y    ++       L 
Sbjct: 175 LMFSATMPNGIRKLAEQILNNPKTV---SITKSESTNSKITQYYYVVQERERDDALVRLI 231

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  IIFC  KK V  L   L  QGF V  +HG+++Q+ R   +  FK+G I + V
Sbjct: 232 DYKNPEKCIIFCRMKKEVDRLVAHLTAQGFKVSGLHGDMEQKQREVTIRAFKQGGIDIFV 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HVFN+ +P  +E+Y+HRIGRTGRAG+ G+A TLV+  +++ I  I
Sbjct: 292 ATDVAARGLDVNDVTHVFNYHIPFDSESYVHRIGRTGRAGKTGEAITLVSPNELRTIKRI 351

Query: 361 EKLIEKKV 368
           EK +  K+
Sbjct: 352 EKDVGTKM 359


>gi|29346241|ref|NP_809744.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568326|ref|ZP_04845737.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6]
 gi|29338136|gb|AAO75938.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842399|gb|EES70479.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6]
          Length = 422

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 133/375 (35%), Positives = 216/375 (57%), Gaps = 7/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ + IP++L+  D+  +AQTGTGKTA+F+LP+L
Sbjct: 1   MKFSELKLNANVLDALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
             L +G         +I+ PTRELA Q+    E +      +   + GG     FE Q K
Sbjct: 61  NKLSEGGHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPASSVAVYGGNDGILFEQQKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIVKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q++++  L NP  I++       +       A Y  Y  +   + +
Sbjct: 181 RQTIMFSATMPAKIQQLAKTILNNPAEIKLAVSRPADKI----IQAAYVCYENQKLGIIR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L + +  +  IIF + K  V  +  +L+    +V  +H +++Q  R  ++  FK G I 
Sbjct: 237 SLFTDEVPERVIIFASSKIKVKEVTKALKMMKLNVGEMHSDLEQAQREVVMHEFKAGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V NFDVP+ +E+Y+HRIGRT RA   G A T +++++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQSNF 356

Query: 358 DAIEKLIEKKVDWLN 372
            +IE  +EK++  + 
Sbjct: 357 KSIENFLEKEIYKIP 371


>gi|87119807|ref|ZP_01075704.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
 gi|86165283|gb|EAQ66551.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
          Length = 450

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 157/371 (42%), Positives = 237/371 (63%), Gaps = 4/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+LGLS  ++ A+ ++GY KP+PIQ + IP +L+ +D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFAELGLSKPILTAIKESGYSKPSPIQQQAIPAILESNDIMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            IL +G +A     R L+L PTRELAAQVAD+   YG++ NL   ++ GG+    Q  +L
Sbjct: 61  EILSRGAKANANQVRALVLTPTRELAAQVADSVATYGQHLNLRSDVVFGGVKINPQMMRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD +N+  +  + +E+LV+DEADRMLDMGFI  I+ + +L+P  RQ
Sbjct: 121 RKGTDILVATPGRLLDLYNQKAIRFDQLEVLVLDEADRMLDMGFIHDIKKVLALLPKRRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +D+++++++  + NP  + V+  ++   T+       +    K+   L   L
Sbjct: 181 NLLFSATFSDDIRQLAKGLMNNPVEVSVSPANAATPTV---KHLLHPVDKKEKTALLIHL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  ++F   K     +   L   G S  AIHGN  Q +R K L++FK   I+++
Sbjct: 238 IVTQDWQQALVFSRTKHGANKIVQKLNDAGISAAAIHGNKSQGARTKALADFKNSDIRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V NFD+PN AE+Y+HRIGRTGRAG  GKA +LV+ +++  +  
Sbjct: 298 VATDIAARGIDIEQLPQVVNFDLPNVAEDYVHRIGRTGRAGATGKAVSLVSADEVDQLKD 357

Query: 360 IEKLIEKKVDW 370
           IE+LI+K +  
Sbjct: 358 IERLIKKLIPR 368


>gi|238788773|ref|ZP_04632564.1| ATP-dependent RNA helicase rhlE [Yersinia frederiksenii ATCC 33641]
 gi|238723078|gb|EEQ14727.1| ATP-dependent RNA helicase rhlE [Yersinia frederiksenii ATCC 33641]
          Length = 451

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 164/454 (36%), Positives = 252/454 (55%), Gaps = 16/454 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY+ PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L + +  +   R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    Q  
Sbjct: 61  QLLSQNQQPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I            ++      
Sbjct: 181 RQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKREL---LS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G I+
Sbjct: 238 QMIGEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR----------KNNPIPQKSTGFD 407
             IE+L+++++  +  D    +P ++   I      R           N   PQ   G  
Sbjct: 358 RDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGRGAQRPGMGRGSNAGRPQNGGGAA 417

Query: 408 RRKKNYSSQKSHIPLKESEKISKLQQDIQENDAD 441
            R  + +S+       +        +    N  +
Sbjct: 418 SRGDSRNSRPRSQADGQRRPAGPSSRGRSRNPGE 451


>gi|150390823|ref|YP_001320872.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149950685|gb|ABR49213.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 529

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 151/412 (36%), Positives = 234/412 (56%), Gaps = 11/412 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL +   ++ A+ + G+  PTPIQ++ IP +    D+ G AQTGTGKTA+F +PM+
Sbjct: 4   MHFEDLDIKKDILKALKELGFEVPTPIQVQAIPHLKMGKDIIGQAQTGTGKTAAFGIPMI 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             +      V+    LI+ PTREL+ QVAD  +K+  +      L I  G P   Q K L
Sbjct: 64  ERVNPKNKAVQ---ILIMAPTRELSVQVADEIQKFSNHVIGVKTLAIYGGQPISTQIKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGRILDH NR  L +  +  +V+DEAD+MLDMGF   ++ I    P  RQ
Sbjct: 121 KRGVQIIVGTPGRILDHINRKTLKLGEVIGVVLDEADQMLDMGFQEDMEAILKETPTERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T +FSAT++ E++++++ +++ P++I V   + T   I   +         +        
Sbjct: 181 TAMFSATISREIERIAQKYMKQPEKIMVAQKALTVPQISQYYFEVKPHEKVEALCRIL-- 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D    GIIFC  K++V  L   L+ +G+S  AIHG++ Q  R +++  F+  TI L+
Sbjct: 239 -DMDKTDLGIIFCRTKRSVDELTEKLQNRGYSAAAIHGDLKQTQRDRVMKKFRNRTIDLL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  V N+D+P   E Y+HRIGRTGRAG+ G A+TL   + ++ + A
Sbjct: 298 VATDVAARGIDVNDVEMVMNYDIPEDFEYYVHRIGRTGRAGKEGVAYTLATGKQMRTLKA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKI--DIAQHNHARKNNPIPQKSTGFDRR 409
           +E  I+ K+  +   + ++N  +EK    IA   HA        + T F  +
Sbjct: 358 LESYIKGKI--VRRKIPTVNDVVEKQKDSIADQIHAVIEKGGLTEYTNFVEK 407


>gi|255731175|ref|XP_002550512.1| eukaryotic initiation factor 4A-12 [Candida tropicalis MYA-3404]
 gi|240132469|gb|EER32027.1| eukaryotic initiation factor 4A-12 [Candida tropicalis MYA-3404]
          Length = 399

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 205/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P+++  +   G+  P+ IQ + I  ++   D    AQ+GTGKTA+F + ML 
Sbjct: 27  TFESMKLKPELLKGIYAYGFEAPSAIQSRAIMQIISGKDTIAQAQSGTGKTATFSIGMLE 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    + +  + LIL PTRELA Q+ +  +  G   N+     IGG       KKL++
Sbjct: 87  VIDT---KSKECQALILSPTRELATQIQNVVKHLGDYMNIHTHACIGGKNVGDDVKKLQQ 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+LD   R  L   NI++L++DEAD +   GF   I  I   +P   Q +
Sbjct: 144 GQQIVSGTPGRVLDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYEIYKHLPPAVQVV 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT++ E+ +++  F  +P +I V     +   I+  +V    +  K   L       
Sbjct: 204 VVSATLSREVLEMTSKFTTDPVKILVKQDEISLSGIKQYYVQCEQEDWKFDTLCDL--YD 261

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K  V  L   + KQ F+V ++HG++ Q  R  I+++F+ G  +++++
Sbjct: 262 NLTITQAVIFCNTKLKVNWLTDQMRKQNFTVVSMHGDMKQDERESIMNDFRTGNSRVLIS 321

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A  L+ K+D+  +  +E
Sbjct: 322 TDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVSTLKELE 381

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    K+  +  +++ +
Sbjct: 382 RHYSTKIREMPMNINDI 398


>gi|148910547|gb|ABR18348.1| unknown [Picea sitchensis]
 gi|224284155|gb|ACN39814.1| unknown [Picea sitchensis]
 gi|224286107|gb|ACN40764.1| unknown [Picea sitchensis]
          Length = 413

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 196/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  SFDEMGLHENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G   +   + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 101 QLDYG---LLDCQALVLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTSVRDDQRILMS 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVFDMLRRHSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V K+D + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLQDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     V+ L  +++ L
Sbjct: 396 RFYNVVVEELPSNVADL 412


>gi|167628011|ref|YP_001678511.1| ATP-dependent RNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167598012|gb|ABZ88010.1| ATP-dependent RNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 445

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 154/403 (38%), Positives = 238/403 (59%), Gaps = 8/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+P +  A+   GY KPTPIQ K IPLVL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MQFSDLGLNPLICSALEKKGYTKPTPIQAKAIPLVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVVFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  L  +++   V+DEADRMLDMGFI  ++ I  L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQNALKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E+  ++  FL +P+ +  +  ++T + I                +     
Sbjct: 181 TLMFSATFSPEITSLANEFLDSPQSVSADVVNTTVKKITQKIYTLDKSTKINALISL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   ++F   K     +   L   G +  AIHGN  Q +R K L++FK   I ++
Sbjct: 238 IKDQDLHQVLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFKSKDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+PN AE+Y+HRIGRTGRAG+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQDGLAISLVSADEVESLSN 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           IE LI   +  + L G  ++ N P+  +  ++   A+K + + 
Sbjct: 358 IEHLIGHLLPREELEGFEATHNVPITSM--SRKTKAKKIDEVK 398


>gi|143462274|sp|Q0CIQ3|RRP3_ASPTN RecName: Full=ATP-dependent rRNA helicase rrp3
          Length = 445

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 137/415 (33%), Positives = 212/415 (51%), Gaps = 9/415 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+   +  A  + GY  PTPIQ + IP+ L+  D+ G+A+TG+GKTA+FVLPML 
Sbjct: 29  TFRELGVIDSLCEACEELGYTAPTPIQERCIPIALEGRDLIGLAETGSGKTAAFVLPMLQ 88

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +   +LIL PTRELA Q+A   E  G   ++   LLIGG+   +Q   L +
Sbjct: 89  ALMD---KPQQFHSLILAPTRELAQQIAHTVEALGARISVRCTLLIGGMDMISQAIALGK 145

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+LDH    K         ++ +    L       I +    +   R+T 
Sbjct: 146 KPHVIVATPGRLLDHLENTKGFSLRTLKYLVLDEADRLLDLDFGPILDKLLRLLPKRKTY 205

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM+ +++ +    L +P R+ V+T + TA  +   ++       K        L +
Sbjct: 206 LFSATMSSKVESLQRASLSDPVRVSVSTKNQTASKLLQSYLFIPH---KFKDFYLVYLLN 262

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   + GIIF         L   L   GF    IHG + Q +R+  L+ F+  +  L++A
Sbjct: 263 ERAGQMGIIFTRTVHETQRLSIMLRNLGFPAIPIHGQLSQSARLASLNKFRARSRNLLIA 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP V +V N+D+P  ++ YIHR+GRT RAG+ G AF+ V + +++    IE
Sbjct: 323 TDVAARGLDIPAVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVTQYEVELWLRIE 382

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNY 413
             + KKV+    +   +    E+++ AQ   A   R       K  G   RK+  
Sbjct: 383 DALGKKVEEYKPEKDEVMIFAERVNDAQRVAALTMRDMQDKDNKGRGPRNRKRTR 437


>gi|120609836|ref|YP_969514.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120588300|gb|ABM31740.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
          Length = 489

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 168/425 (39%), Positives = 235/425 (55%), Gaps = 14/425 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L+  +  AV + GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L 
Sbjct: 4   SFSNLSLAEPLARAVAEMGYTSMTPIQAEAIPVVLTGQDVMGAAQTGTGKTAAFSLPLLQ 63

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L K       P        +L PTRELA QVA     Y K   L   ++ GG+  + Q 
Sbjct: 64  RLLKHENSSTSPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQT 123

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P 
Sbjct: 124 LELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPK 183

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           TR TLLFSAT + E+++++ ++LQNP  IEV       ET        Y+          
Sbjct: 184 TRTTLLFSATFSPEIKRLAGSYLQNPVTIEVAR---PNETASTVEQRFYSVNDDDKRRAI 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             +     +K   +F N K     L  +LE++G    A+HG+  Q  R+K L  FK G +
Sbjct: 241 HHVLRTRGVKQAFVFVNSKLGCARLSRTLEREGLKAAALHGDKSQDERLKALDAFKRGEV 300

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+V +D+AARGLDI DV  VFNFDVP  AE+Y+HRIGRTGRAG  G A TLV+  D + 
Sbjct: 301 DLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSSSDARL 360

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  IEKL +KK+     DL +L    ++    + N  R+     +       R+ +    
Sbjct: 361 VADIEKLTKKKI-----DLEALEVEEDR-PRGRFNDGRRGWRDDESGGDARGRRDSRGEG 414

Query: 417 KSHIP 421
           +   P
Sbjct: 415 RDSRP 419


>gi|78776226|ref|YP_392541.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251]
 gi|78496766|gb|ABB43306.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 398

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 165/401 (41%), Positives = 246/401 (61%), Gaps = 6/401 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ D GY KPTPIQ + IP++L + D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFTTLGLSAPILKAIKDQGYTKPTPIQKQAIPIILSKKDILAGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L + ++   +  R LIL PTRELAAQV ++   YGK  + T  ++ GG+    Q   L
Sbjct: 61  ELLSRDKSSTKKRIRALILTPTRELAAQVGESVSIYGKYLSFTSTIIYGGVSINPQLSAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D++I TPGR+LDH ++  + + ++E LV+DEADRMLDMGFI  I+ + +++P  +Q
Sbjct: 121 RKGVDIVIATPGRLLDHLSQKSIDLKDVEFLVLDEADRMLDMGFINDIKKVLAVLPKNKQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT +DE++K+S+  L +P  IEV  P+ TA++I+        +  ++  +     
Sbjct: 181 TLLFSATYSDEIKKLSDRLLNSPVLIEVERPNKTAQSIKQIVYPVDKERKRELLVHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   LEK G S  AIHGN  Q +RMK L  FK+G I+++
Sbjct: 238 IKEGKWQQVLVFTRTKHGANKLSAQLEKDGISSSAIHGNKSQNARMKALQEFKDGDIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV N+++PN  E+Y+HRIGRTGRAG  G A +LV  ++ +++ +
Sbjct: 298 VATDIAARGIDIDQLPHVINYELPNVPEDYVHRIGRTGRAGSSGDAISLVCIDEHEYLSS 357

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           IEKLI+  +   WL       +   E I+      + K   
Sbjct: 358 IEKLIKTDIQKVWLKDFKPDPSIKAEPINQGGQRGSHKKRR 398


>gi|309798558|ref|ZP_07692833.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
           infantis SK1302]
 gi|308117794|gb|EFO55195.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
           infantis SK1302]
          Length = 525

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 154/420 (36%), Positives = 239/420 (56%), Gaps = 9/420 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIRT---EEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR--KNNPIPQKSTGFDRRKKNYSSQKS 418
           E L +K++  L    S+      K  +A     R   N  I      F +  +  +S+ S
Sbjct: 355 ENLTKKRMKGLKP-ASAEEAFQAKKQVALKKIERDFANEEIRSNFEKFGKDARQLASEFS 413


>gi|126306068|ref|XP_001381369.1| PREDICTED: similar to Chain C, Structure Of The Human Exon Junction
           Complex With A Trapped Dead-Box Helicase Bound To Rna
           [Monodelphis domestica]
          Length = 404

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + +  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 32  TFDLVGLREDLLRGIYAYGFEKPSAIQQRALKQIIKGRDVIAQSQSGTGKTATFSISVLQ 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       ++L+R
Sbjct: 92  CLDI---QVRETQALILAPTRELAVQIQKVLLALGDYMNVQCHACIGGTNVGDDIRQLDR 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD+MLD GF   I ++   +P + Q +
Sbjct: 149 GQHVVAGTPGRVFDMIRRRSLTTRAIKMLVLDEADQMLDKGFKEQIYDVYRYLPPSIQVV 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   +       
Sbjct: 209 LISATLPHEILEMTTKFMTDPIRILVRRDELTLEGIKQFFVAVEREEWKFDTVCDL--YD 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V +IHG++  R R  I+  F+ G  +++++
Sbjct: 267 SLTITQAVIFCNTKRKVDWLTEKMREANFTVSSIHGDMPSRERKFIMKEFRSGVNRVLIS 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 327 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 386

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 387 QYYSTQIDEMPMNVADL 403


>gi|311693479|gb|ADP96352.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15]
          Length = 507

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 159/465 (34%), Positives = 242/465 (52%), Gaps = 31/465 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+LGL P V+ AV   GY  P+PIQ + IP +L  + + G+AQTGTGKTA+F LP+L
Sbjct: 4   LSFAELGLDPAVLEAVSAVGYETPSPIQAQAIPALLAGNHLLGVAQTGTGKTAAFALPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + ++     V  P+ L+L PTRELA QVA+ F  Y   +     L I  G  F  Q K L
Sbjct: 64  SRIDAS---VTDPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFYPQIKGL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA V++ TPGR+LDH  +G L +++++ LV+DEAD ML MGFI  ++ I +  P   Q
Sbjct: 121 RRGAQVIVGTPGRMLDHLRKGTLKLDSLKALVLDEADEMLRMGFIDDVEAILAKTPENCQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  +++KV++ +L+N   + + + + T E I          Y+++       +
Sbjct: 181 RALFSATMPPQIKKVAQTYLRNATEVRIESETRTVERI---SQFVLPVYAERKLDALTRI 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              + +   IIF   K     L   L  +G +V  + G+++QR R + + + K G   ++
Sbjct: 238 LEVEPIDAAIIFVRTKAETTMLAEKLSARGHAVAPLSGDLNQRQREQTVEDLKRGKKDII 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  + HV N+DVP   E YIHR+GRTGRAGR GKA  LV   +   +  
Sbjct: 298 IATDVAARGLDVSRITHVINYDVPYDTEAYIHRVGRTGRAGREGKAILLVTPRERSWLRT 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E+     ++        L  P+E           +      +  GF   KK        
Sbjct: 358 LERATNSPMEAYE-----LPSPVE-------LKKMREQQFESQLLGFAEDKKL------- 398

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
                ++ +S L +  + ND D     G +  +M     G L  +
Sbjct: 399 -----AKAMSLLDEIAERNDMDMAMVAGALACWMEAAQPGSLPLE 438


>gi|257470192|ref|ZP_05634283.1| ATP-dependent RNA helicase [Fusobacterium ulcerans ATCC 49185]
 gi|317064408|ref|ZP_07928893.1| ATP-dependent RNA helicase [Fusobacterium ulcerans ATCC 49185]
 gi|313690084|gb|EFS26919.1| ATP-dependent RNA helicase [Fusobacterium ulcerans ATCC 49185]
          Length = 527

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 129/368 (35%), Positives = 212/368 (57%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F  LGL  K + A+   GY KPTPIQ  TIP +L    D+ G AQTGTGKTA+F LP+L
Sbjct: 6   EFKKLGLGEKTIKALSKKGYEKPTPIQALTIPALLDGEKDIIGQAQTGTGKTAAFSLPIL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E G+      + ++L PTRELA QVA+          + +  + GG   E Q ++L+
Sbjct: 66  ERFEPGKV----VQAIVLAPTRELAIQVAEEMNSLANGKKIRITPVYGGQSIEFQIRQLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TPGR++D  +R  + ++N++  ++DEAD ML+MGF+  ++ I       ++ 
Sbjct: 122 KGTDIIVGTPGRVMDLMDRKLIKLDNLKYFILDEADEMLNMGFLEDVEKILESTNDEKRM 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM +E+ KV++  +++ + + V T   T +         +  + +        + 
Sbjct: 182 LFFSATMPNEILKVAKKHMRDYEVLAVKTRELTTDLT---DQIYFEVHERDKFEALCRII 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  GI+FC  K +V ++   L  +G+    +HG+I Q  R   L  FK   I ++V
Sbjct: 239 DLTKDFYGIVFCRTKNDVNDVVGKLNDRGYDAEGLHGDISQNYREVTLKRFKAKKINVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV N+ +P  AE+Y+HRIGRTGRAG+ G A T +  ++ + +  I
Sbjct: 299 ATDVAARGIDVNDLSHVINYSIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 358

Query: 361 EKLIEKKV 368
           +K+++ ++
Sbjct: 359 QKIVKTEI 366


>gi|71022263|ref|XP_761361.1| hypothetical protein UM05214.1 [Ustilago maydis 521]
 gi|74699927|sp|Q4P3U9|RRP3_USTMA RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|46097669|gb|EAK82902.1| hypothetical protein UM05214.1 [Ustilago maydis 521]
          Length = 551

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 146/420 (34%), Positives = 236/420 (56%), Gaps = 10/420 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F+DLG+ P++V A  + G+  PTPIQ+K IP  LQ  DV G+AQTG+GKTA+F +P+L
Sbjct: 104 VEFSDLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPIL 163

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L       +     +L PTRELA Q++   E  G    +  A ++GG+   +Q+  L 
Sbjct: 164 QALWDN---PKPFFACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALS 220

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   V++ TPGR+ DH  N     +  ++ LV+DEADR+LDM F P I  +   +P  R+
Sbjct: 221 KRPHVIVATPGRLQDHLENTKGFSLRGLQYLVMDEADRLLDMDFGPIIDKLLQSIPRERR 280

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMT ++ K+    L+NP R+EV+T  +T  T++  ++     +     +     
Sbjct: 281 TMLFSATMTTKVAKLQRASLKNPVRVEVDTKYTTVSTLKQHYMFMPFAHKDTYLVHLA-- 338

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + I+F     +   L   L   GF    +HG + Q++R+  L+ FK G   ++
Sbjct: 339 -NEQAGHSIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSIL 397

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR G++ TLV + D++ +  
Sbjct: 398 VATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVELLQR 457

Query: 360 IEKLIEKKVDWLNG--DLSSLNPPLEKIDIAQHNHARK-NNPIPQKSTGFDRRKKNYSSQ 416
           IE +I  K+    G  D  ++    E++  A     R+  +     + G  +RK+    +
Sbjct: 458 IEAVIGLKMTEFPGGNDKEAVMLLSERVAEAHRAAVRELKDKGVGSAGGSGKRKRKMDGK 517


>gi|322374711|ref|ZP_08049225.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9)
           [Streptococcus sp. C300]
 gi|321280211|gb|EFX57250.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9)
           [Streptococcus sp. C300]
          Length = 449

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 145/373 (38%), Positives = 226/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS +++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIRT---EEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T E ++  ++    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|319902155|ref|YP_004161883.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
 gi|319417186|gb|ADV44297.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
          Length = 415

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 134/375 (35%), Positives = 221/375 (58%), Gaps = 7/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+ +V+ A+    + + TPIQ K+IP++L+  D+  +AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELQLNDQVLDALDAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
             L +G+        +I+ PTRELA Q+    E +     ++   + GG     FE Q K
Sbjct: 61  NNLSEGKHPEDSINCIIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSRVTYFILDEADRMLDMGFYDDIMQIVKFLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++ N L NP  +++       +       A Y  Y  +   + +
Sbjct: 181 RQTIMFSATMPTKIQQLANNILNNPAEVKLAVSKPADKI----VQAAYVCYENQKLGIIR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L ++ T +  IIF + K  V  +  +L++   +V  +H +++Q  R  ++  FK G I 
Sbjct: 237 NLFAEQTPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREDVMYEFKAGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T +++++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQTNF 356

Query: 358 DAIEKLIEKKVDWLN 372
             IEK +EK +  + 
Sbjct: 357 KNIEKFLEKDIYKIP 371


>gi|270293148|ref|ZP_06199359.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M143]
 gi|270279127|gb|EFA24973.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M143]
          Length = 520

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 145/373 (38%), Positives = 226/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS +++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIRT---EEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F+++P+ +++     T E ++  ++    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|239995610|ref|ZP_04716134.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126]
          Length = 483

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 159/428 (37%), Positives = 238/428 (55%), Gaps = 6/428 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ A+   G+  P+PIQ K IP VLQ  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+       R LIL PTRELAAQV ++   + +   L  A++ GG+    Q  KL
Sbjct: 61  QRLMEGQPVSGNNVRALILTPTRELAAQVEESIRAFSEFLPLKTAVVFGGVGINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DVLI TPGR+LD + +  +  + +E+LV+DEADRMLDMGFI  I+ +  L+P  RQ
Sbjct: 121 RKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIRRVLKLLPQERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT +DE+  +++   +NP  I     ++T E ++   V           +     
Sbjct: 181 SLLFSATFSDEITALAKTITRNPVSISTAPANTTVEAVQQHLVTIDKSKKTTALICL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  ++F   K     +   L +      AIHGN  Q +R K L++FK G I+++
Sbjct: 238 IKQQKWEQVLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALADFKNGAIKVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI ++  V N D+PN A +Y+HRIGRTGRAG  G+A++ V  E+++++  
Sbjct: 298 VATDIAARGIDISELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVCAEELQNLKD 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE LI+K +  + L G       P+  +   +     K    PQ  +G + ++   + + 
Sbjct: 358 IETLIQKLLPRETLEGFEPQQAVPVTTLSKPKKPKKPKKPKAPQGESGSEGKRSGENKKS 417

Query: 418 SHIPLKES 425
                  S
Sbjct: 418 GQRQGNRS 425


>gi|117924939|ref|YP_865556.1| DEAD/DEAH box helicase [Magnetococcus sp. MC-1]
 gi|117608695|gb|ABK44150.1| DEAD/DEAH box helicase domain protein [Magnetococcus sp. MC-1]
          Length = 439

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 153/370 (41%), Positives = 225/370 (60%), Gaps = 5/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA L L   ++ A+  AGY  PTPIQ + IP +L   D+ GIAQTGTGKTA+F LP+L 
Sbjct: 3   DFASLNLVKPLLNALTQAGYTTPTPIQAQAIPHLLAGRDLLGIAQTGTGKTAAFALPILN 62

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                KGR     PR LIL PTRELA+Q+ ++   YGK+   T  ++ GG+  + Q + L
Sbjct: 63  KLSQIKGRPAPNAPRALILTPTRELASQIGNSIAVYGKHVPTTHTVVFGGVGKQPQIRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD      + ++ I++ V+DEADRMLDMGFI  I+ I  ++P  R 
Sbjct: 123 SRGVDILVATPGRLLDLMGERHVRLDQIQVFVLDEADRMLDMGFIHDIRRIIKVIPAKRH 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  ++ +++E  L NP ++EV   S+T E I    +    Q  +      + +
Sbjct: 183 TLLFSATMPKDIAELAEGLLTNPAKVEVTPESTTVERITQKVLFVDKQNKRSL---LKNV 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              ++++  ++F   K     +   L+K   +  AIHGN  Q +R K L  F++G ++++
Sbjct: 240 LEHESIEQVLVFTRTKHGANRVAEYLDKHRIASAAIHGNKSQSAREKALDGFRKGKLKVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HV NFD+PN +E+Y+HRIGRT RAGR G A +    E+  ++  
Sbjct: 300 VATDIAARGIDVAGISHVINFDLPNESESYVHRIGRTARAGRDGNAISFCDAEERGYLLD 359

Query: 360 IEKLIEKKVD 369
           IEK I + V 
Sbjct: 360 IEKTIRQTVP 369


>gi|229828479|ref|ZP_04454548.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM
           14600]
 gi|229793073|gb|EEP29187.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM
           14600]
          Length = 538

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 164/427 (38%), Positives = 251/427 (58%), Gaps = 7/427 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++ GL   ++ A+  AGY +PTP+Q ++IP++L+  D+ G AQTGTGKTA+F LP+L
Sbjct: 62  LKFSEFGLKKDLLSAIRKAGYEEPTPVQEESIPVILEGRDMIGCAQTGTGKTAAFALPVL 121

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +    R L+L PTRELA Q+ DNF+KYG+  +L    L GG     Q   L 
Sbjct: 122 HKLT--LLKRPRVRALVLTPTRELAIQIFDNFKKYGRYLHLRTVCLYGGAKRGPQIGALR 179

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGAD+L+ TPGR+LD   +  + ++++EILV+DEADRMLDMGF+P +  I    P  RQT
Sbjct: 180 RGADILVATPGRLLDFMGQDLVDLSSVEILVLDEADRMLDMGFLPDVSRIVESTPSKRQT 239

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSATM  E++++++  L++P +++V   +  A+T+E   + +  +  ++         
Sbjct: 240 LMFSATMEKEVRQLADRMLKDPVQVQVTPENEAADTVEQKLIFSSREDKREIIASLL--- 296

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + +++ I+F   K     L   L+++G    AIHG+  Q  R   L+ FK G +++MV
Sbjct: 297 TDEAVESAIVFTRTKHGADKLSRELKRRGIESVAIHGDKTQGQRQDALNRFKSGKVRVMV 356

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP + HVFN+DVP  A  YIHRIGRTGRAG  G A TL  + ++  +  +
Sbjct: 357 ATDVAARGLDIPKLSHVFNYDVPEEAGAYIHRIGRTGRAGESGIAITLCCEAELDALREV 416

Query: 361 EKLIEKKVDWLNGDLS-SLNPPLEKIDIAQHNHARKN-NPIPQKSTGFDRRKKNYSSQKS 418
           E+L+EK +  L    S  L     K    +  H R       QK+ G    K    +++ 
Sbjct: 417 EELLEKPIPELQTQWSLPLERKARKGKGGRTRHGRSGYRSGGQKNAGKSGHKTGSRNRQG 476

Query: 419 HIPLKES 425
           H   ++ 
Sbjct: 477 HADRRQK 483


>gi|223590207|sp|A5DE68|FAL1_PICGU RecName: Full=ATP-dependent RNA helicase FAL1
 gi|190345565|gb|EDK37471.2| hypothetical protein PGUG_01569 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 397

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P+++  + + G+  P+ IQ + I  +++  D    AQ+GTGKTA+F + +L+
Sbjct: 25  TFESMNLKPELLKGIYNYGFEAPSAIQSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILS 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    + +  + L+L PTRELA Q+ +  E  G   N+     IGG       KKL++
Sbjct: 85  SIDT---KSKDCQALVLSPTRELAQQIENVIEHLGDYMNVRSHACIGGTQVGEDVKKLQQ 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+LD   R  ++  ++++LV+DEAD +L  GF   I  I   +P   Q +
Sbjct: 142 GQHIISGTPGRVLDMIKRRNIMPRHVKMLVLDEADELLTKGFKEQIYEIYKTLPAGAQVV 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+T E+ +++  F  +P +I V     T + I+  ++    +  K   L       
Sbjct: 202 VVSATLTPEVLEMTNKFTSDPVKILVKRDDVTLKGIKQYYIQCEKEDWKFDTLCDL--YD 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K  V  L   + K  F+V A+HG++ Q  R  I+  F+ G+ +++++
Sbjct: 260 NLTITQAVIFCNTKAKVNWLAGQMRKSNFTVAAMHGDMKQEDRDSIMKEFRSGSTRVLIS 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENY+HRIGR+GR GR G A  L+  +D   + +++
Sbjct: 320 TDVWARGIDVQQVSLVINYDLPLDKENYVHRIGRSGRFGRKGTAINLLTSQDKDELKSLQ 379

Query: 362 KLIEKKVDWLNGDLSSL 378
                K+  +  DLS +
Sbjct: 380 HYYSTKIREVPADLSKI 396


>gi|163751726|ref|ZP_02158944.1| ATP-dependent RNA helicase [Shewanella benthica KT99]
 gi|161328378|gb|EDP99537.1| ATP-dependent RNA helicase [Shewanella benthica KT99]
          Length = 453

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 152/415 (36%), Positives = 242/415 (58%), Gaps = 7/415 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ ++ + GY  PTPIQ + IPL L+  ++   AQTG+GKTA+FVLPML
Sbjct: 6   MSFSNLGLSDPILTSLAELGYSSPTPIQAEAIPLALKGKNLIAAAQTGSGKTATFVLPML 65

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +G   R +  R LIL PTRELA QV ++ E YGK  NL    + GG+ +E Q + L
Sbjct: 66  EMLARGETQRKKRVRALILTPTRELAVQVCNSIEAYGKYLNLKALAVYGGVDYEPQKQAL 125

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR+ D + +  +  + IE+LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 126 IEGIDIVVATPGRLRDLYTQRSIHFDEIEMLVLDEADRMLDMGFIEDITKIIDTLPVDRQ 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  + N  ++   + +  +E   +           K + L   L
Sbjct: 186 NLLFSATLSRQVRELAKETIPNAIQL---SVTKKSEGKPNIDQWLVTVDKDKKSALLSHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  +  +IF   K     L   LEK+G     IH    Q  R +IL++FK G IQ +
Sbjct: 243 IKENRWQQALIFIETKHGAAKLVTQLEKRGIQAECIHSGRAQAIREQILADFKSGKIQFL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++ ++ARG+DI ++  V N+D+P  A+ Y+HRIGRT RAG  G+A +LV+K+D K++  
Sbjct: 303 ISTGISARGIDIDELPLVINYDLPYPADEYVHRIGRTARAGAAGEAISLVSKDDFKNLCM 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           IEK ++  ++     + +   P +++ ++  N   KN P    S     + K+  
Sbjct: 363 IEKRLDHLIER---KVVAGFEPRKEVPVSVLNFVPKNKPARDDSKDSRPKPKDKR 414


>gi|157960395|ref|YP_001500429.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157845395|gb|ABV85894.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 623

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 142/372 (38%), Positives = 220/372 (59%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL+  +V A+ D GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L 
Sbjct: 7   TFRELGLTESLVRALDDLGYEKPTPIQAASIEPLMANKDILGQAQTGTGKTGAFALPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++        P+ L+L PTRELA QVA+ F  Y K       L I  G   + Q   L 
Sbjct: 67  SIDPN---TNAPQILVLAPTRELAVQVAEAFASYAKYMKGLHVLPIYGGQSMQQQLNALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++DH  RG L ++ ++ +V+DEAD ML MGFI  I+ I    P TRQ 
Sbjct: 124 RGPQIIVGTPGRVMDHMRRGTLKLDTLKAMVLDEADEMLKMGFIDDIEWILEHTPKTRQL 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +++++V+  +L NP  +++   +ST ETIE  FV        +  +    ++
Sbjct: 184 ALFSATMPEQIKRVANKYLDNPVHVKIAATTSTVETIEQRFVQVSQHNKLEALVRVLEVE 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +   IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++
Sbjct: 244 KTEGI---IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAIEQLKRGQLDIII 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +GHV N+D+P   E Y+HRIGRTGRAGR G A   V   +++ +  I
Sbjct: 301 ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI 360

Query: 361 EKLIEKKVDWLN 372
           E+    ++  ++
Sbjct: 361 ERATNSRIAPMD 372


>gi|227822942|ref|YP_002826914.1| dead-box ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
 gi|227341943|gb|ACP26161.1| dead-box ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
          Length = 520

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 151/378 (39%), Positives = 227/378 (60%), Gaps = 4/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS +++  +   G+ KPTPIQ + IPLVL+ HD+ G+AQTGTGKTA+F LPM+ 
Sbjct: 13  TFKELGLSQQILATLSANGFEKPTPIQAQAIPLVLKGHDLIGLAQTGTGKTAAFGLPMIE 72

Query: 62  ILEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L     R   R  R L+L PTREL  Q+A N + + K   L V +++GG+    Q ++L
Sbjct: 73  KLVADGKRPDPRNIRALVLAPTRELVNQIATNLKLFVKKSPLKVGVVVGGVSINKQTEQL 132

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD   R  + +     LV+DEAD+MLD+GFI  ++ I+ LVP  RQ
Sbjct: 133 ARGVDILVATPGRLLDLVARKAVTLTQGRYLVLDEADQMLDLGFIHDLRKISKLVPKNRQ 192

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  ++ +++  +L +P ++EV  P   A+ +E        +  K    + +  
Sbjct: 193 TLLFSATMPKQIAELAGEYLTDPVKVEVTPPGKAADKVEQYVHFVPGKDLK--TTILKQS 250

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +     ++F   K     L   L+  GF   +IHGN  Q  R + L  F++G I+++
Sbjct: 251 LTNNPDGLSLVFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKGFRDGEIRVL 310

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V HV+N+D+P   + Y+HRIGRT R GR G A    A ++I+ +  
Sbjct: 311 VATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRD 370

Query: 360 IEKLIEKKVDWLNGDLSS 377
           IEKL+  ++   +G+  S
Sbjct: 371 IEKLMGIQIAVASGEAPS 388


>gi|159482639|ref|XP_001699375.1| eukaryotic initiation factor [Chlamydomonas reinhardtii]
 gi|158272826|gb|EDO98621.1| eukaryotic initiation factor [Chlamydomonas reinhardtii]
          Length = 392

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 198/377 (52%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL  +++  +   G+ KP+ IQ + +  ++Q  DV   AQ+GTGK++   +    
Sbjct: 20  TFDAMGLKEELLRGLYAYGFEKPSAIQQRAVLPIVQGRDVIAQAQSGTGKSSMISVSTCQ 79

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++  +      + LIL PTRELA Q        G   N+     +GG       +KLE 
Sbjct: 80  LVDVQQRE---CQVLILSPTRELAQQTEKVILAVGDFMNIQAHACVGGKSLGEDIRKLEN 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I+ L++DEAD ML   F   I +I   +P   Q +
Sbjct: 137 GVHVVSGTPGRVFDMIQRRNLRTRHIKTLILDEADEMLAKNFKDQIYDIYRYLPPETQVV 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P R+ V     T E I+  FVA   +  K   L       
Sbjct: 197 LVSATLPAEVLEMTNKFMTDPIRVLVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 254

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  ++++ 
Sbjct: 255 TLTITQAVIFCNTKRKVDWLTEKMRQNNFTVASMHGDMVQKEREAIMGEFRSGAARVLIT 314

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 315 TDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDIRILRDIE 374

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 375 QYYSTQIDEMPMNVAEL 391


>gi|146418894|ref|XP_001485412.1| hypothetical protein PGUG_03141 [Meyerozyma guilliermondii ATCC
           6260]
 gi|152013508|sp|A5DIP0|DHH1_PICGU RecName: Full=ATP-dependent RNA helicase DHH1
 gi|146390885|gb|EDK39043.1| hypothetical protein PGUG_03141 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 547

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 135/462 (29%), Positives = 219/462 (47%), Gaps = 16/462 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + GL  +++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTASF++P L 
Sbjct: 30  SFEEFGLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPALQ 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    ++   + LIL PTRELA Q +   +  GK+  L   +  GG        +L+ 
Sbjct: 90  QVKT---KLNKIQVLILVPTRELALQTSQVVKTLGKHLKLQCMVTTGGTLLRDDVMRLDE 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD   R     +   + V+DEAD+ML   F   I+ I    P  RQ+L
Sbjct: 147 PVHILVGTPGRVLDLAARSIADFSECPMFVMDEADKMLSREFKGIIEQILEFFPKNRQSL 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F+                T+            K+       L S
Sbjct: 207 LFSATFPLAVKS----FMDKHLNKPYEINLMDELTLRGISQFYAFVEEKQKLHCLNTLFS 262

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S    H  + Q++R K+   F++G+++ +V 
Sbjct: 263 KLKINQAIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGSVRTLVC 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A   +  +D K +  IE
Sbjct: 323 SDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINFIHWDDRKSLFNIE 382

Query: 362 KLIEKKVDWLNGDLS-SLNPPLEKIDIAQH---NHARKNNPIPQKSTGFDRRKKNYSSQK 417
             +  ++  +  D+  SL    ++  I +    +   K N   +K  G++ R +  S   
Sbjct: 383 TELGTEIKPIPSDIDRSLYVTEDEASIPRPFKIDELPKGNEHSRKRNGYEYRGQPTSQGF 442

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRG 459
              P + +   +++ Q        + G +G+ P  +    +G
Sbjct: 443 PQQPPQANTGYNQVPQ----GSPQAQGLQGS-PQGLQGSPQG 479


>gi|121604151|ref|YP_981480.1| DEAD/DEAH box helicase domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120593120|gb|ABM36559.1| DEAD/DEAH box helicase domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 571

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 162/427 (37%), Positives = 244/427 (57%), Gaps = 10/427 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F +L L+P ++ AVL+ GY  PTPIQ + IP VL   D+ G AQTGTGKTA+F LP+ 
Sbjct: 1   MKFEELNLAPAILKAVLEQGYDTPTPIQAQAIPAVLAGGDLLGGAQTGTGKTAAFTLPLL 60

Query: 60  ----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                      R  V   R LI+ PTRELAAQV ++   YGK  +LT  ++ GG+   AQ
Sbjct: 61  QRLSTEPRLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYLDLTSMVMFGGVGMGAQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            +KL RG D+L+ TPGR+LDH ++G L ++ ++IL++DEADRMLDMGFI  I+ + +LVP
Sbjct: 121 IEKLRRGVDILVATPGRLLDHASQGTLDLSQVQILILDEADRMLDMGFIHDIKKVLALVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +QTLLFSAT +DE+++++   L+NP  I+V   ++T + I            K     
Sbjct: 181 KQKQTLLFSATFSDEIRELANGLLRNPLSIQVTPRNTTVQRITQTIHPVGRSKKKAL--- 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              + ++      ++F   K    N+   L K G    A+HGN  Q +R + L  FK G 
Sbjct: 238 LTHIINEHNWSQVLVFTRTKFGANNVAEHLTKAGIPAMALHGNKSQTARTQALQGFKNGD 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ +VA+D+AARG+DI ++ HV N+++PN +E+Y+HRIGRTGRAG  G+A +LV  ++  
Sbjct: 298 IRALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGQAVSLVCLDEEG 357

Query: 356 HIDAIEKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            +  IE+  ++ ++   + G  +      E + + +          P +       K   
Sbjct: 358 FMQDIERFTKQNIENIVVPGFEAEPGEKAEPLAMGRQTIWGGLGKPPSRDVMQAAAKAAR 417

Query: 414 SSQKSHI 420
           S   + I
Sbjct: 418 SEMMTRI 424


>gi|113971144|ref|YP_734937.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113885828|gb|ABI39880.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 433

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 158/438 (36%), Positives = 244/438 (55%), Gaps = 12/438 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F      P+++ A+ D GY K TPIQ + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             + +  +          IL PTRELAAQVADN E Y K  N +V  + GG+  E Q +K
Sbjct: 61  QKMAENPSETLKSNARVLILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RGAD+++ TPGR+L+H     L +++I+ LV+DEADRMLDMGF   IQ I   V   R
Sbjct: 121 LKRGADIIVATPGRLLEHLTACNLSLSSIDFLVLDEADRMLDMGFNADIQKILQAVNKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  ++K++   +  P+ I  +  ++TA+T+         +  ++       
Sbjct: 181 QNLLFSATFSSAVKKLANEMMVKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F   +     L   L   G     +HG   Q SR + L  F  G +++
Sbjct: 239 -IGKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFMSGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDIP + +V NFD+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLA 357

Query: 359 AIEKLIEKKVDWLN---GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            IEKLI +K+  +     ++ S +  L+++   + + A+K   +   S      K   S 
Sbjct: 358 DIEKLIGQKIRRITVPGYEVGSRDLLLKQLQT-RRSFAKKQQRLDNVSEQIVAEK---SM 413

Query: 416 QKSHIPLKESEKISKLQQ 433
           Q   + +K  +  SK ++
Sbjct: 414 QGRRVKMKVGQAPSKAKK 431


>gi|295677616|ref|YP_003606140.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
 gi|295437459|gb|ADG16629.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 518

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 162/372 (43%), Positives = 229/372 (61%), Gaps = 6/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSEPLVRAVNELGYTSPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                +       R+ R LIL PTRELAAQV ++   YGK   L   ++ GG+    Q  
Sbjct: 61  QRLNSMAPAAGGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQID 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+RG D+++ TPGR+LDH  +  + ++++EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 ALKRGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAET+            ++      
Sbjct: 181 RQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHL- 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               Q +    ++F   K     L   L K G S  AIHGN  Q +R + L+ FK+GT+Q
Sbjct: 240 --IRQHSWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  ++++ +
Sbjct: 298 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLL 357

Query: 358 DAIEKLIEKKVD 369
             IEKLI++ V 
Sbjct: 358 KDIEKLIKRPVP 369


>gi|109898646|ref|YP_661901.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c]
 gi|109700927|gb|ABG40847.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 426

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 139/406 (34%), Positives = 230/406 (56%), Gaps = 10/406 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+ L L+P++  A+   GY K TPIQ + I +  +  DV   AQTGTGKTA+F +P+L
Sbjct: 1   MNFSSLDLAPELQQAIDACGYKKMTPIQQQAIVVARRGRDVLASAQTGTGKTAAFAVPIL 60

Query: 61  TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +     +     PR LIL PTRELA Q+A N   Y K  +++V  L GG+    Q  K
Sbjct: 61  QQMLNKPKKTTPGTPRALILTPTRELAEQLATNIANYAKFTDISVTALYGGVKLGGQASK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D++I TPGR+L+H     + + N+E +V+DEADRMLDMGFI  ++ + + +    
Sbjct: 121 LSAGVDIVISTPGRLLEHMTLKNVELANVEFVVLDEADRMLDMGFIADVRQMLAQITSAH 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT++  + +++   L+N + I     +S A+T++H       +   +       
Sbjct: 181 QTLLFSATISPTVNELAHKLLKNHQEIRATQLNSAADTVQHVMYPVSEEDKIRLFKTLLA 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            Q+       ++F + K+    L  +L+         H +  Q +R + +++FK   +Q+
Sbjct: 241 EQNW---YQVLVFTSTKEQADKLMAALKTSKIDAAVCHADKSQGARRRAIADFKSAKLQV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+++AARGLDI  + +V N+++P   E+Y+HRIGRTGRAG+ G A + V++E+ + ++
Sbjct: 298 LIATEVAARGLDIQGLDYVVNYNLPYLPEDYVHRIGRTGRAGQQGNAISFVSREEERTVE 357

Query: 359 AIEKLIEKKVDWLNGD---LSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            IE+LI  K+  ++      SS    L+   + +H+   + N   Q
Sbjct: 358 RIERLINGKIKRISRPDFAFSSRESLLKT--VRKHSKNSRTNKASQ 401


>gi|302910116|ref|XP_003050220.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256731157|gb|EEU44507.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 407

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 121/378 (32%), Positives = 204/378 (53%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPK-VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F  + L  + ++  +   GY  P+ +Q + I  V +  D    AQ+GTGKTA+F + ML
Sbjct: 33  TFESMSLKAENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISML 92

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ++      VR  + L+L PTRELA Q+       G   N+     IGG       +KL+
Sbjct: 93  QVINIA---VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLD 149

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  ++  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q 
Sbjct: 150 HGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPATQV 209

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +  K   L      
Sbjct: 210 VVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDL--Y 267

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IFCN ++ V  L   + +  F+V ++HG++ Q+ R  I+ +F++G  ++++
Sbjct: 268 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLI 327

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  I
Sbjct: 328 STDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVRILRDI 387

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E     ++D +  +++ L
Sbjct: 388 ELYYSTQIDEMPMNVADL 405


>gi|71280656|ref|YP_266818.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71146396|gb|AAZ26869.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 420

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 160/419 (38%), Positives = 236/419 (56%), Gaps = 7/419 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+   L   ++ A+ ++ Y +PT IQ ++IPL+L +HDV   AQTGTGKTA+F LP+L
Sbjct: 5   MTFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPIL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   +      R L+L PTRELA QV  +F  YG+  ++T+ +  GG+  + Q  +L+
Sbjct: 65  QQLISVQPCKPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+LI TPGR+LD      + ++NIE LV DEADRMLDMGF   I  IT  +P T+QT
Sbjct: 125 VGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D++ K+S+N L  PK +E++  +  A+ +E       A   ++         
Sbjct: 185 LLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDADRKRELTSFL---I 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  ++F   K+   +L   + K G    AIHG+  Q +R K L  FKEG ++ ++
Sbjct: 242 GSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALI 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + HV N+++P  AE+Y+HRIGRT RAG  G A +LV+  +   + AI
Sbjct: 302 ATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLLTAI 361

Query: 361 EKLIEKKV--DWLNGDLSSLNPPL--EKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           E+L++ ++   WL G    L       K  I + N  +       KS G     +N   
Sbjct: 362 EELLDIQLLQQWLPGYELDLTKIANSNKRPINKKNARKDALSAGDKSKGHRPNTRNRRR 420


>gi|304410127|ref|ZP_07391746.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307302161|ref|ZP_07581919.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304351536|gb|EFM15935.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306914199|gb|EFN44620.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 433

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 154/434 (35%), Positives = 237/434 (54%), Gaps = 11/434 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     SP+++ A+ D GY + TPIQ + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             + +  +          IL PTRELAAQVADN   Y K  N +V  + GG+  E Q +K
Sbjct: 61  QKMVENPSETLKSNARVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RGADV++ TPGR+L+H     L ++N++ LV+DEADRMLDMGF   IQ I   V   R
Sbjct: 121 LKRGADVIVATPGRLLEHLTACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  ++K++ + +  P+ I V+  ++TA+T+         +  ++       
Sbjct: 181 QNLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F   +     L   L   G     +HG+  Q SR + L  F  G +++
Sbjct: 239 -IGKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGDKGQGSRRRALREFVAGDVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDIP + +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLA 357

Query: 359 AIEKLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            IEKLI +++  +       G    L   L+          R +N   Q +   + + + 
Sbjct: 358 DIEKLIGQQIRRVTVPGYEVGSRELLLKQLQTRRSFAKKQQRTDNVDAQVTAEKNMQGRR 417

Query: 413 YSSQKSHIPLKESE 426
              +    P K  +
Sbjct: 418 VKMKVGQAPSKAKK 431


>gi|302306296|ref|NP_982501.2| AAL041Cp [Ashbya gossypii ATCC 10895]
 gi|299788450|gb|AAS50325.2| AAL041Cp [Ashbya gossypii ATCC 10895]
          Length = 486

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 142/425 (33%), Positives = 228/425 (53%), Gaps = 8/425 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L L P+++ A  +  + KPTPIQ K IP  LQ  D+ G+AQTG+GKTA+F +P+L 
Sbjct: 67  SFRELDLVPELIEACDNLNFTKPTPIQSKAIPPALQGKDIIGLAQTGSGKTAAFAIPILN 126

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   +         IL PTRELA Q+ + F+  G    +    ++GG+    Q + L R
Sbjct: 127 RLWHDQQPYY---ACILAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMR 183

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH  N     +  ++ LV+DEADR+LDM F P +  I   +P   +T
Sbjct: 184 KPHIIIATPGRLMDHLENTKGFALRKLQFLVMDEADRLLDMEFGPVLDRILKNIPTKGRT 243

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSATMT ++ K+    L NP +  V+    T +T+    +           +     
Sbjct: 244 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGLKNTFLIYLL-- 301

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   K  I+F   K N   +        FS  A+HG+++Q  R   L  FK G   ++
Sbjct: 302 -NEFIGKTTIVFTRTKANAERISGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKKSIL 360

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV++ D++ I  
Sbjct: 361 VATDVAARGLDIPSVDLVINYDIPVDSKSYIHRVGRTARAGRSGKSVSLVSQYDLELILR 420

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+++ KK+   N D S +    + +D A      + N   ++     + +++ ++ + +
Sbjct: 421 IEEVLGKKLPKENVDKSIVLSLRDSVDKANGEVIMELNRRNKEKQTRGKGRRSRTATREN 480

Query: 420 IPLKE 424
           +  +E
Sbjct: 481 MDKEE 485


>gi|56552313|ref|YP_163152.1| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241761630|ref|ZP_04759717.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260753995|ref|YP_003226888.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|56543887|gb|AAV90041.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241373938|gb|EER63471.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258553358|gb|ACV76304.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 458

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 152/374 (40%), Positives = 227/374 (60%), Gaps = 4/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGL   +V A+   GY KPTPIQ + IP +L+  D+CGIAQTGTGKTA+F LP +
Sbjct: 6   VSFKTLGLDSSLVQALDGLGYSKPTPIQAQAIPHLLEGKDLCGIAQTGTGKTAAFALPSI 65

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                       R  R LIL PTRELA+Q+A     Y ++  ++V  + GG+P   Q + 
Sbjct: 66  HYLATNPQARPQRGCRMLILSPTRELASQIARACNDYTRHLRMSVNAVFGGVPIGRQMRM 125

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RG D+L+ TPGR+LD  ++  L++ ++E+ V+DEAD+MLD+GFI  ++ I  L+P  R
Sbjct: 126 LDRGTDILVATPGRLLDLIDQRALVLKDVEVFVLDEADQMLDLGFIHALRRIDKLLPKNR 185

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM   +Q++S  FL +P  + V   SSTAE +E   +       +    +   
Sbjct: 186 QTLFFSATMPKTIQELSSQFLSDPVTVSVAPQSSTAERVEQFGIFVNQSEKQALLTITL- 244

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            ++   +   ++F   K     +   LE  G    AIHGN  Q  R + L+ F+ G +++
Sbjct: 245 -KNTPGLDRALVFTRTKHGADRVVRHLEAAGLPAAAIHGNKSQPQRERALNAFRNGRLKI 303

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P V HVFN+++PN AE Y+HRIGRT RAGR G+A + +A ++  ++ 
Sbjct: 304 LVATDIAARGIDVPGVSHVFNYELPNVAEQYVHRIGRTARAGRDGQAISFIANDERSYLR 363

Query: 359 AIEKLIEKKVDWLN 372
           +IE+L   K+  L 
Sbjct: 364 SIERLTRVKLQILP 377


>gi|308487516|ref|XP_003105953.1| CRE-INF-1 protein [Caenorhabditis remanei]
 gi|308254527|gb|EFO98479.1| CRE-INF-1 protein [Caenorhabditis remanei]
          Length = 402

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 200/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L  +++  +   G+ KP+ IQ + I       DV   AQ+GTGKTA+F + +L 
Sbjct: 30  SFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQ 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+    L++ PTRELA Q+       G+  N+ +   IGG       +KLE 
Sbjct: 90  RIDHEDPHVQA---LVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEN 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L  + I++ V+DEAD ML  GF   I ++   +P   Q +
Sbjct: 147 GIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYDVFRSMPQDVQVV 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+  V++ F++NP RI V     T E I   ++       K   L      +
Sbjct: 207 LLSATMPSEVLDVTDRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCDL--YN 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IFCN ++ V  L   +  + F+V  +HG++DQ  R  I+  F+ G+ ++++ 
Sbjct: 265 VVNVTQAVIFCNTRRKVDQLTEQMTNKQFTVSCLHGDMDQAERDTIMREFRSGSSRVLIT 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V + D + +  IE
Sbjct: 325 TDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEIE 384

Query: 362 KLIEKKVDWLNGDLSSL 378
                +++ +   ++ L
Sbjct: 385 TYYTTQIEEMPESIADL 401


>gi|229087937|ref|ZP_04220048.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-44]
 gi|228695405|gb|EEL48279.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-44]
          Length = 481

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 135/407 (33%), Positives = 233/407 (57%), Gaps = 8/407 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  LS +++ A+    Y +PT +Q K IP+ L+R D+   +QTG+GKTASF +P+  
Sbjct: 5   NFKEYALSGEIIRALTSLKYEQPTEVQGKVIPIALERKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ LIL PTRELAAQV ++    G+   +    + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALILTPTRELAAQVKEDITNIGRFKRIKATAIYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G   +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++ +S  ++++P  IE+     T + IEH          ++   L + + +
Sbjct: 182 LFSATLPEDVENLSRTYMESPINIEITASGITTDKIEH---RILEVREEEKFSLLKDITT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            ++  + IIFC  ++NV ++   L++  +    +HG + Q  R  ++++FK G  + +VA
Sbjct: 239 VESPDSCIIFCRTQENVDHVFRQLKRSSYPCDKLHGGMIQEDRFAVMNDFKRGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + +  IE
Sbjct: 299 TDVAARGIDIENITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEERFLAEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           + I  ++  +     S    ++K    +     K     +KS G ++
Sbjct: 359 EYIGFEIQKIEA--PSKESVVKKKAAFEEKINSKPIMKKEKSAGLNK 403


>gi|221633115|ref|YP_002522340.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
 gi|221156880|gb|ACM06007.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
          Length = 534

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 153/414 (36%), Positives = 227/414 (54%), Gaps = 17/414 (4%)

Query: 1   MD---FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           M+   FA LGLSP ++ A+ D G+ +P P+Q + IP++L   D    A TGTGKTA+F L
Sbjct: 9   MNPSGFAALGLSPALLAALRDVGFEQPMPVQTEAIPVLLSGRDAIVQAHTGTGKTAAFAL 68

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           P+L  L         P+ L+L PTRELA QVA+   + G+  +  V  L GG P E Q +
Sbjct: 69  PILQGLVPY---GHGPQALVLTPTRELAIQVAEAIHRLGRYLDARVLALYGGQPIERQLR 125

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L    DV++ TPGRI+DH  R  L ++ + ++++DEAD MLDMGFI  ++ I   VP  
Sbjct: 126 ALRHPVDVIVGTPGRIMDHLRRETLRLDQVRVVILDEADEMLDMGFIEDVEWILEHVPRE 185

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT LFSAT+   ++++++ +L+ P  I ++    T  +I        A           
Sbjct: 186 RQTALFSATIPPRIRQLTQRYLRAPVTIAIHPERVTVPSIAQTVYEVAAHAK---LEALS 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +   + IIF   K     L H L+  G++  AIHG++ Q  R + +  F+ G + 
Sbjct: 243 RILDYEAPTSAIIFVRTKSGADELAHKLQSLGYAAEAIHGDLSQAMRDRAMQRFRAGQVD 302

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L++A+D+AARGLDIP V HV NFD+P+  E+Y+HRIGRTGRAG  G A TL+   +   +
Sbjct: 303 LLIATDVAARGLDIPAVSHVINFDIPSDPESYVHRIGRTGRAGATGTAITLIEPRERWLL 362

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN--HARKNNPIPQKSTGFDRR 409
             IE+ I +++      +    P  E+I   Q     A  +  I Q+     RR
Sbjct: 363 RTIERAIGQRL------IPKRIPTREEIARRQRELLGASLSEVIEQRDLELGRR 410


>gi|50555013|ref|XP_504915.1| YALI0F02695p [Yarrowia lipolytica]
 gi|74632960|sp|Q6C347|FAL1_YARLI RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49650785|emb|CAG77720.1| YALI0F02695p [Yarrowia lipolytica]
          Length = 397

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+  P+ IQ + I  +++  D    AQ+GTGKTA+F + ML 
Sbjct: 25  TFESMDLKDDLLRGIYAYGFEAPSAIQSRAITQIIKGRDTIAQAQSGTGKTATFSISMLE 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++      +    ++L PTRELA Q+       G   N+     IGG       KKLE 
Sbjct: 85  VIDTKHRETQA---MVLSPTRELATQIQSVILALGDYMNVQCHACIGGTSLSVDMKKLEA 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR LD   +G L   N+++L++DEAD +L+ GF   I +I   +P   Q +
Sbjct: 142 GQQVVSGTPGRCLDMIKKGCLRTKNLKMLILDEADELLNKGFQEQIYDIYRYLPAATQVV 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+   + +++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 202 VVSATLPHSVLEMTSKFMTDPVRILVKRDELTLEGLKQYFIAVEQEEWKFDTLCDL--YD 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN KK V  L   ++   F+VC++HG++ Q+ R  I++ F+ G  +++++
Sbjct: 260 TLTITQAVIFCNTKKKVDWLTQQMKDNNFTVCSMHGDMAQKDRDSIMNEFRSGRSRVLIS 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A      +DI  +  IE
Sbjct: 320 TDVWARGIDVQQVSLVINYDLPPNRENYIHRIGRSGRFGRKGVAINFATNDDITTLRDIE 379

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ +
Sbjct: 380 QYYSTQIDEMPVNVTDM 396


>gi|194333556|ref|YP_002015416.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris
           aestuarii DSM 271]
 gi|194311374|gb|ACF45769.1| DEAD/DEAH box helicase domain protein [Prosthecochloris aestuarii
           DSM 271]
          Length = 607

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 142/372 (38%), Positives = 212/372 (56%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L+  V+ A+   GY  PTPIQ++TIP +LQ  DV G AQTGTGKTA+F LP+L+
Sbjct: 32  SFRDLELAAPVIEALDKVGYENPTPIQLQTIPYILQGRDVLGQAQTGTGKTAAFALPILS 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++        P+ L+L PTRELA QVA+ F++Y         L I  G  +  Q K+L+
Sbjct: 92  RIDC---DKNYPQALVLTPTRELAIQVAEAFQRYAACMPDFHVLPIYGGQDYAGQLKRLK 148

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  R  L ++ +  LV+DEAD ML MGF+  ++ I    P +RQ 
Sbjct: 149 RGVHVVVGTPGRVIDHIKRSSLKLDKLHTLVLDEADEMLRMGFVDDVEWILEQTPASRQV 208

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   + +++   L +P  I + + SST + I   F+   A +          + 
Sbjct: 209 ALFSATMPSVILRIARKHLSDPAEITIKSKSSTVDAITQRFLTVGAHHK---LEALTRIL 265

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   +    +L   L  +G++  A+ G + Q  R K +   K G + ++V
Sbjct: 266 EAEPFDGVIIFVRTRTATQDLSEKLRARGYAAAALSGEMVQHQREKTIDQLKNGKLNIIV 325

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV N+D+P+  E+Y+HRIGRTGRAGR G A   V   ++  +  I
Sbjct: 326 ATDVAARGLDVERVTHVINYDIPSDTESYVHRIGRTGRAGRSGDAILFVTSREMSMLRTI 385

Query: 361 EKLIEKKVDWLN 372
           E+ + + +D + 
Sbjct: 386 ERAVRRSIDRME 397


>gi|323358213|ref|YP_004224609.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
 gi|323274584|dbj|BAJ74729.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
          Length = 585

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 147/372 (39%), Positives = 224/372 (60%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   V+ A+ D GY  P+ IQ  TIP++LQ  DV G+AQTGTGKTA+F LP+L
Sbjct: 19  LTFADLGLDANVLKALKDVGYETPSAIQAATIPVLLQGRDVVGLAQTGTGKTAAFALPVL 78

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + +E G    + P+ L+L PTRELA QV + FEKY  +      L +  G  +  Q   L
Sbjct: 79  SQMETGH---KNPQALVLAPTRELALQVCEAFEKYAAHIKGVSVLPVYGGQGYGQQLSAL 135

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DV++ TPGRI+DH ++G L ++ ++ LV+DEAD ML MGF   ++ I +  P T+Q
Sbjct: 136 RRGVDVIVGTPGRIMDHLDKGTLDLSELKFLVLDEADEMLKMGFAEDVETILADTPSTKQ 195

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  +++++S  +L +P+ I V T ++T+  I   ++    Q           +
Sbjct: 196 VALFSATMPAQIRRISAQYLNDPEEITVKTKTTTSANITQRYLIVSYQQKIDALTRILEV 255

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++ + M   I+F   K     +   L  +G++  AI+G+I Q  R + ++  K G + ++
Sbjct: 256 ENFEGM---IVFTRTKNETETVAEKLRARGYTAAAINGDIAQVQRERTVNQLKSGKLDIL 312

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A + V   + + + A
Sbjct: 313 VATDVAARGLDVERISHVVNYDLPIDTESYVHRIGRTGRAGRTGDAISFVTPRERRMLTA 372

Query: 360 IEKLIEKKVDWL 371
           IEK   + +  +
Sbjct: 373 IEKATRQPLTEM 384


>gi|213647600|ref|ZP_03377653.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 364

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 156/367 (42%), Positives = 225/367 (61%), Gaps = 6/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +D+++ ++E  L+NP  IEV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQV---TQHVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q   +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 238 QMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357

Query: 358 DAIEKLI 364
             IEKL+
Sbjct: 358 RDIEKLL 364


>gi|152996400|ref|YP_001341235.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150837324|gb|ABR71300.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 632

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 159/438 (36%), Positives = 239/438 (54%), Gaps = 20/438 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL   V+ AV D GY +P+ IQ ++IP +L+  D+ G AQTGTGKTA+F LP+L+
Sbjct: 9   TFDSLGLIAPVLKAVADLGYEQPSAIQAQSIPYLLEGRDLLGQAQTGTGKTAAFALPLLS 68

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++      +  + L+L PTRELA QV++ F+ Y +N      L I  G+ ++ Q ++L+
Sbjct: 69  RIDVTD---KTTQLLVLAPTRELAIQVSEAFQSYARNLPDFHVLPIYGGMSYDTQLRQLK 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  R  L ++ I+ LV+DEAD ML MGFI  ++ I    P TRQ 
Sbjct: 126 RGVQVVVGTPGRVMDHIRRKTLKLDGIKALVLDEADEMLRMGFIDDVEWILEQTPPTRQI 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   +++V+   L NPK +++ T +STA TI   +      +          + 
Sbjct: 186 ALFSATMPAVIRQVANRHLNNPKEVKIVTKTSTAMTITQKYWPVSGLHKLDALTRILEMN 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M   IIF   K   V L   L  +G +  A++G+I Q  R + +   K+G I ++V
Sbjct: 246 EHDGM---IIFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVDRIKKGQIDILV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD+  V HV N+D+P   E+Y+HRIGRTGRAGR G A   VA  + + + AI
Sbjct: 303 ATDVVARGLDVERVSHVVNYDIPYDTESYVHRIGRTGRAGRSGTAILFVAHRERRMLQAI 362

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG-----FDRRKKNYSS 415
           E+   + ++ +    +S        DI  H   R    I           F    ++Y  
Sbjct: 363 ERATRQPIESMTLPTAS--------DINAHRVNRFKQSITDAMDNEDLDFFLELVQSYQK 414

Query: 416 QKSHIPLKESEKISKLQQ 433
           +    PLK +  ++ + Q
Sbjct: 415 ENEVDPLKMAAALAHMAQ 432


>gi|317493632|ref|ZP_07952053.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918575|gb|EFV39913.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 636

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 133/378 (35%), Positives = 225/378 (59%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   SFADLGLAAPIIQALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLH 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     ++ P+ L+L PTRELA QV++    + K+ N    + +  G  ++ Q + L 
Sbjct: 67  NIDPS---LKAPQVLVLAPTRELAVQVSEAMADFAKHMNGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAQHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSITTRPDISQSYWTVFGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G+S  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E++++  +  +    + L
Sbjct: 361 ERIMKLTIPEVEIPNAEL 378


>gi|294338780|emb|CAZ87114.1| ATP-dependent RNA helicase [Thiomonas sp. 3As]
          Length = 533

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 155/392 (39%), Positives = 237/392 (60%), Gaps = 10/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL   +V AV + GY  PTPIQ++ IP+VL  HD+   AQTGTGKTA F LPML
Sbjct: 1   MSFQDLGLIEPLVRAVAEQGYTVPTPIQLQAIPVVLAGHDLLAAAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRAR-----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L  G          +PR LIL PTRELAAQV +N   YG++  L    + GG+  + Q
Sbjct: 61  QRLSGGEPARNAKGKIIPRALILTPTRELAAQVHENLAAYGRHLKLHSMAMYGGVGMQPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG D+++ TPGR+LDH ++  + ++ +++LV+DEADRMLDMGF+  ++ I +L+P
Sbjct: 121 INALARGMDIVVATPGRLLDHQSQRNIDLSAVQMLVLDEADRMLDMGFVHDMRRIVALLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT ++E+++++ +FL NP+++ V   ++TA+ +E        +  +   + 
Sbjct: 181 KQRQNLLFSATFSEEIKRLAGDFLVNPQQVAVARQNATADLVEQIVFPVDRERKRDMLVH 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 +      ++F   K     L   L+K G      HGN  Q +R++ L++FK G 
Sbjct: 241 L---IRERNWPQTLVFTRTKHGANRLAEQLDKDGIVATGFHGNKTQSARLRALADFKSGK 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARG+DI  +  V N+++PN  E+Y+HRIGRTGRAG +G+A +LV  +++ 
Sbjct: 298 LQVLVATDIAARGIDIDQLPVVVNYELPNIPEDYVHRIGRTGRAGSNGQAISLVCVDELG 357

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKI 385
            +  IEKL+   +  + + G     N   + I
Sbjct: 358 FLRDIEKLVRNPITQEVIPGFEPDPNAKAQPI 389


>gi|296134828|ref|YP_003642070.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
 gi|295794950|gb|ADG29740.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
          Length = 533

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 155/392 (39%), Positives = 237/392 (60%), Gaps = 10/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL   +V AV + GY  PTPIQ++ IP+VL  HD+   AQTGTGKTA F LPML
Sbjct: 1   MSFQDLGLIEPLVRAVAEQGYTVPTPIQLQAIPVVLAGHDLLAAAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRAR-----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L  G          +PR LIL PTRELAAQV +N   YG++  L    + GG+  + Q
Sbjct: 61  QRLSGGEPARNAKGKIIPRALILTPTRELAAQVHENLAAYGRHLKLHSMAMYGGVGMQPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG D+++ TPGR+LDH ++  + ++ +++LV+DEADRMLDMGF+  ++ I +L+P
Sbjct: 121 INALARGMDIVVATPGRLLDHQSQRNIDLSAVQMLVLDEADRMLDMGFVHDMRRIVALLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT ++E+++++ +FL NP+++ V   ++TA+ +E        +  +   + 
Sbjct: 181 KQRQNLLFSATFSEEIKRLAGDFLVNPQQVAVARQNATADLVEQIVFPVDRERKRDMLVH 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 +      ++F   K     L   L+K G      HGN  Q +R++ L++FK G 
Sbjct: 241 L---IRERNWPQTLVFTRTKHGANRLAEQLDKDGIVATGFHGNKTQSARLRALADFKSGK 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARG+DI  +  V N+++PN  E+Y+HRIGRTGRAG +G+A +LV  +++ 
Sbjct: 298 LQVLVATDIAARGIDIDQLPVVVNYELPNIPEDYVHRIGRTGRAGSNGQAISLVCVDELG 357

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKI 385
            +  IEKL+   +  + + G     N   + I
Sbjct: 358 FLRDIEKLVRNPITQEVIPGFEPDPNAKAQPI 389


>gi|167910130|ref|ZP_02497221.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           112]
          Length = 400

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 165/390 (42%), Positives = 231/390 (59%), Gaps = 11/390 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+ +++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   ++ A T+            +   +  
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                  ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 ---IRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
           +  IEKLI++    L+ +  +L+ P  + D
Sbjct: 369 LADIEKLIKRT---LSLETLALDLPRHRHD 395


>gi|167844897|ref|ZP_02470405.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           B7210]
          Length = 399

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 165/390 (42%), Positives = 231/390 (59%), Gaps = 11/390 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+ +++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   ++ A T+            +   +  
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                  ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 ---IRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
           +  IEKLI++    L+ +  +L+ P  + D
Sbjct: 369 LADIEKLIKRT---LSLETLALDLPRHRHD 395


>gi|254259821|ref|ZP_04950875.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
 gi|254218510|gb|EET07894.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
          Length = 486

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 165/390 (42%), Positives = 231/390 (59%), Gaps = 11/390 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+ +++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   ++ A T+            +   +  
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                  ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 ---IRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
           +  IEKLI++    L+ +  +L+ P  + D
Sbjct: 369 LADIEKLIKRT---LSLETLALDLPRHRHD 395


>gi|319937469|ref|ZP_08011874.1| helicase [Coprobacillus sp. 29_1]
 gi|319807309|gb|EFW03918.1| helicase [Coprobacillus sp. 29_1]
          Length = 520

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 143/372 (38%), Positives = 224/372 (60%), Gaps = 5/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGLS  V+  +   GYV P+PIQ K+IP++L+  D+ G AQTGTGKT +F     
Sbjct: 4   VTFKDLGLSSDVLKGIEMMGYVSPSPIQEKSIPVLLEGQDIIGQAQTGTGKTLAFG---S 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L K +   +  + LIL PTRELA Q+ +  ++ GK  NL++  + GG   E Q K L+
Sbjct: 61  VLLSKIQKEGKHVKALILSPTRELALQIHEELKRIGKCTNLSIVSVFGGSDIERQIKDLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGAD+++ TPGR+ D   R  L +NNI+ +V+DEAD ML+MGF+  I+ I    P  +QT
Sbjct: 121 RGADIVVGTPGRVQDLMRRRVLKINNIDFMVLDEADEMLNMGFVEDIETILKATPDNKQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++K++ N++Q+          +   +    +       +K   L +  + 
Sbjct: 181 VLFSATMPATIKKIASNYMQDDYMHIQIKSKTKTASTVSQYYFETRPTNKFETLCR--IL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               M+N IIFC  K++V  +  S++++ + V A+HG++ Q  R   L  FK G IQ +V
Sbjct: 239 DSRQMENTIIFCKTKRSVDEVVASMQQKHYDVEAMHGDLSQNQRTNTLKRFKSGHIQYLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HV N+++P   E YIHRIGRTGRA + G+A++LV   +   + +I
Sbjct: 299 ATDVAARGIDVDNISHVINYEMPQDEELYIHRIGRTGRANKKGEAYSLVTNREKNFLMSI 358

Query: 361 EKLIEKKVDWLN 372
           +K     ++ L+
Sbjct: 359 QKRTNSHIEKLD 370


>gi|78485124|ref|YP_391049.1| DEAD/DEAH box helicase-like [Thiomicrospira crunogena XCL-2]
 gi|78363410|gb|ABB41375.1| ATP-dependent RNA helicase [Thiomicrospira crunogena XCL-2]
          Length = 445

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 177/451 (39%), Positives = 250/451 (55%), Gaps = 9/451 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  ++ AV   GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLSKPILDAVTQQGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L KG+          IL PTRELAAQV+D+ E YGK  +L   ++ GG+    Q  +L
Sbjct: 61  ERLSKGKPAGPNQARALILTPTRELAAQVSDSVETYGKQLSLKSTVVFGGVKINPQMMRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD FN+  +  + +EILV+DEADRMLDMGFI  I+ I   +P  RQ
Sbjct: 121 RKGVDILVATPGRLLDLFNQNAIKFDQLEILVLDEADRMLDMGFIHDIKRILKALPKNRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT ++E++++++  + NP  I V   ++TA T+                      
Sbjct: 181 NLLFSATFSNEIRQLAKGLVNNPVEISVTPRNTTATTVTQWIYPVDKGRKAALLTKL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++     +IF   K     L   LE +G    AIHGN  Q +R K L++FK+GT+Q +
Sbjct: 238 IKENDWSQVLIFSRTKHGANRLTKQLEGKGIKAAAIHGNKSQGARTKALASFKDGTVQAL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV NFD+PN AE+Y+HRIGRTGRAG  G+A +LV+ +++K +  
Sbjct: 298 VATDIAARGIDIDQLPHVVNFDLPNVAEDYVHRIGRTGRAGAVGEAVSLVSADEVKELAG 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK-- 417
           IE LI+K    L   +     P   +   + NH  K    P+K        K+ S  K  
Sbjct: 358 IENLIQK---LLPRKIIDGFEPTNDVPETRLNHRPKKPKKPKKPKAPHTSGKDTSENKPD 414

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRGN 448
           +H P K     ++     + +         +
Sbjct: 415 AHAPKKNPANRNRRTNKPKSSPHSGSPKTSH 445


>gi|299530317|ref|ZP_07043742.1| hypothetical protein CTS44_06063 [Comamonas testosteroni S44]
 gi|298721688|gb|EFI62620.1| hypothetical protein CTS44_06063 [Comamonas testosteroni S44]
          Length = 613

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 169/480 (35%), Positives = 267/480 (55%), Gaps = 37/480 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AV + GY  PTPIQ + IPLVL  HD+   AQTGTGKTA+F LPML
Sbjct: 1   MTFEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L  G A          RTL+L PTRELAAQV +N   Y K  ++T  ++ GG+  + Q
Sbjct: 61  QRLASGAAPKNKFGGKGIRTLVLTPTRELAAQVEENLRGYAKYLDITSTVIFGGVGMKPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             ++E+G DVL+ TPGR+LD   +G + ++ +E+L++DEADRMLDMGFI  ++ + +LVP
Sbjct: 121 IARIEKGVDVLVATPGRLLDLAGQGFMDLSTVEMLILDEADRMLDMGFIHDVKKVLALVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE+++++   L+NP+ I+V   ++T + I+           K+    
Sbjct: 181 KDKQSLLFSATFSDEIRELANGLLRNPQSIQVTPRNTTVQRIKQVIHPVGRGKKKQV--- 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              +  ++     ++F   K    N+   L K G S  A+HGN  Q +R + L  FK G 
Sbjct: 238 LLHIIQENNWSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGE 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VA+D+AARG+DI ++ +V N+++PN +E+Y+HRIGRTGRAGR G A +LV  ++  
Sbjct: 298 LRALVATDIAARGIDIDELPNVVNYEIPNISEDYVHRIGRTGRAGREGNAVSLVCMDEEG 357

Query: 356 HIDAIEKLIEKKVDWLN--------GDLSSL-------------NPPLEKIDIAQHNHAR 394
            +  IE+  ++++            G+++                PP   +  A    AR
Sbjct: 358 FMMDIERFTKQEIPVQPIEGFGPEEGEIAEPIAMGRQTLWGGAGKPPSRDVMQAAAKAAR 417

Query: 395 -------KNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
                  ++N  P  S G  RR     +Q+     +  ++ ++  +    N  +S   +G
Sbjct: 418 QEMMERIRSNKTPNGSRG-GRRPAAADAQQGEAEGEAQQRPARQHKPRSNNRVNSQRSQG 476


>gi|260775114|ref|ZP_05884013.1| ATP-dependent RNA helicase RhlB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609031|gb|EEX35191.1| ATP-dependent RNA helicase RhlB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 433

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 139/406 (34%), Positives = 210/406 (51%), Gaps = 10/406 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL P+VV  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADLGLHPQVVEGLKKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 E    +   PR +I+ PTRELA Q+ ++ E       +  AL  GG  ++ Q  
Sbjct: 70  HLLNTPEHEGRKPTQPRAIIMAPTRELAIQIYNDAEPLVAETGIKAALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KLE+G DVLI T GRI+D + +    +NNI+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLEQGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           ++ L    + T   +     F       E        +T        +   ++    L Q
Sbjct: 190 KERLNMLFSATLSYRVQELAFEHMHN-PEHVVVEPEVKTGHRIQEELFYPSNEHKMSLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++  +  IIF N K    ++   L   G  V  + G++ Q+ R +IL  F +G + 
Sbjct: 249 TLIEEEWPERAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKRERILEQFTKGEVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   ++   ++
Sbjct: 309 LLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAINL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
             IE+ IE  +   + D S+L       D+      R N P  +++
Sbjct: 369 PPIEEYIEHTIPVSDYDPSALIE-----DLPAPLRMRSNRPQQRRT 409


>gi|186476836|ref|YP_001858306.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184193295|gb|ACC71260.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 482

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 163/373 (43%), Positives = 224/373 (60%), Gaps = 8/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL   ++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLHADILKAIAEQGYTTPTPIQAKAIPVVLGGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N + Y K+  L  A++ GG+    Q+
Sbjct: 72  RLLPLANTSASPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQS 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  +++LV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPT 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   +STA  +                +  
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTATNVTQIVYEVAEGDKTGAVVQL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                + ++K  I+FCN K     L   LE+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 ---IRERSLKQVIVFCNSKIGASRLARQLERDGVVATAIHGDRSQSERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFSPNERKQ 368

Query: 357 IDAIEKLIEKKVD 369
           +  IEKLI++ +D
Sbjct: 369 LADIEKLIKRPLD 381


>gi|90021156|ref|YP_526983.1| DNA topoisomerase III [Saccharophagus degradans 2-40]
 gi|89950756|gb|ABD80771.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 398

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 155/404 (38%), Positives = 232/404 (57%), Gaps = 7/404 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F+ LGL   ++ A+ D GY  PT IQ + IP +L   DV   AQTGTGKTASFVLP+ 
Sbjct: 1   MTFSTLGLCDPILQALNDVGYEAPTAIQEQAIPPILAGRDVLAKAQTGTGKTASFVLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            T  +K   R +  + LIL PTRELA QV DN   YG + +LT   ++GG+  E Q  KL
Sbjct: 61  QTFKDKANRRAKRIKALILVPTRELAIQVEDNIRLYGAHLSLTSMAMVGGVDIEPQKAKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR++D  ++  L  + +E LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 VEGVDILVATPGRLIDLMHQRALHFDELEFLVLDEADRMLDMGFIGDINKIIERLPERRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT++D+++ +++  + N   I +     +   I    V                 
Sbjct: 181 SLLFSATLSDKVRLLAKTAIVNAVEISIAADKKSTPPITQWLVTVDKHNKSALLTHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++  K  +IF   K     L   LEK+G    +IH    Q  R ++L++FK G I  +
Sbjct: 238 INENGWKQALIFIRTKHGAAKLVTQLEKRGIKAESIHSGRSQAVRTQLLADFKAGKIGFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI D+  V N+D+P+ A +Y+HRIGRTGRAG  G+A +L++ +D K + A
Sbjct: 298 VATGIAARGIDIDDLDRVVNYDLPDDAHDYVHRIGRTGRAGVSGEAVSLISMDDFKRLCA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           IE  +   +D    +++     ++++ I+  N+ +K+   PQ+ 
Sbjct: 358 IESRLGHIIDR--KEVAEF-KAVKEVPISILNYVKKSAKKPQRR 398


>gi|332285242|ref|YP_004417153.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
 gi|330429195|gb|AEC20529.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
          Length = 455

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 158/381 (41%), Positives = 220/381 (57%), Gaps = 8/381 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D GL P V+ AV + GY  PTPIQ + +P+V+   DV G AQTGTGKTA+F LP+L 
Sbjct: 13  TFSDFGLHPSVLQAVTETGYTTPTPIQAQAMPMVMDGRDVMGAAQTGTGKTAAFTLPILH 72

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L +       P        IL PTRELA QVAD+   Y K   L   ++ GG+    Q 
Sbjct: 73  RLMQFANTSASPARHPVRALILTPTRELADQVADSVTTYAKFTPLRSTVVFGGVDIGPQR 132

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L RG ++LI TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF+P +  I  L+P 
Sbjct: 133 DALRRGCEILIATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLDRIVRLLPA 192

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT ++E++K+  ++L NP  IEV   ++TA+T+            +   +  
Sbjct: 193 KRQGLLFSATFSNEIRKLGRSYLSNPAEIEVAARNATADTVTQIAYPLAGSDKRAAVVHL 252

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                       I+F N K     L   L + G    +IHG+  Q  RMK L  FK G +
Sbjct: 253 ---VKSRGFNQVIVFSNTKIGTSRLARELVRDGVKAESIHGDKSQLDRMKALDAFKAGEL 309

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLD+  V  V N+D+P  AE+Y+HRIGRTGRAG  G+A      E+ ++
Sbjct: 310 EVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGNTGEAIAFFTPEEERY 369

Query: 357 IDAIEKLIEKKVDWLNGDLSS 377
           +  IEKLI+ K+      LS+
Sbjct: 370 LLDIEKLIKAKIPRGQLALST 390


>gi|322387454|ref|ZP_08061064.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC
           700779]
 gi|321141983|gb|EFX37478.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC
           700779]
          Length = 524

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 155/420 (36%), Positives = 240/420 (57%), Gaps = 9/420 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  ++  V  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFNLSADLLAEVEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIRT---EEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +++IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR--KNNPIPQKSTGFDRRKKNYSSQKS 418
           E L +K++  L    S+      K  +A     R   N  I      F +  +  +S+ S
Sbjct: 355 ENLTKKRMKGLKP-ASAEEAFQAKKQVALKKIERDFANEEIRSNFEKFGKDARQLASEFS 413


>gi|294637929|ref|ZP_06716198.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda ATCC 23685]
 gi|291088955|gb|EFE21516.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda ATCC 23685]
          Length = 429

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 135/421 (32%), Positives = 214/421 (50%), Gaps = 8/421 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  L P V+ A+   G+   TPIQ   +PL +   DV G AQTGTGKT +F+     
Sbjct: 10  KFADFALHPMVIKALESKGFHSCTPIQALALPLAIAGRDVAGQAQTGTGKTLAFLASTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLTHPAIAERKTNQPRALIMAPTRELAVQIHSDAEPLARETGLRLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE+G D+LI T GR++D+  +G + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLEQGVDILIGTTGRLIDYAKQGHVDLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPV 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F        V       +T        +   +++   L Q
Sbjct: 190 AQRLNMLFSATLSYRVRELAFEHMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G I 
Sbjct: 249 TLLEEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVPQKKRLRILDDFTKGHID 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E + ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGNSISLACEEYVLNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
            AIE  I   +     +  +L    P  +++  +++    +    P++  G  R  +  +
Sbjct: 369 PAIENYIGHSIPVSKYNSEALLTDLPAPKRLSRSRNAGGARRPGAPRRGNGAPRPNRKRT 428

Query: 415 S 415
            
Sbjct: 429 G 429


>gi|261379789|ref|ZP_05984362.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
           subflava NJ9703]
 gi|284797475|gb|EFC52822.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
           subflava NJ9703]
          Length = 463

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 164/439 (37%), Positives = 254/439 (57%), Gaps = 23/439 (5%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F+ LGL  ++V A+ D GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP 
Sbjct: 1   MNPFSSLGLGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 60

Query: 60  LTILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           L  L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+  + 
Sbjct: 61  LERLKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDK 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++
Sbjct: 121 QTADLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQML 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A  A   +    
Sbjct: 181 PKQRQTLLFSATFSPPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALKKRNL-- 238

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             + L     M   I+FC  K++V  +   L ++  +  +IHG+  Q+SR++ L+ FKEG
Sbjct: 239 -LERLIVDLHMNQVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEG 297

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           T++++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ K + 
Sbjct: 298 TLRVLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQ 357

Query: 355 KHIDAIEKLIEK--KVDWLNGDLS----SLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           K  ++I++L      V+ + G       + N    +    QHN +R            DR
Sbjct: 358 KMFESIKELTGSDLNVERIEGFEPYWWGNDNQDEAEAQPVQHNDSRSRRE--------DR 409

Query: 409 RKKNYSSQKSHIPLKESEK 427
            K+N  + KS    K++E+
Sbjct: 410 NKRNEYANKSDKSSKKAEE 428


>gi|302854756|ref|XP_002958883.1| eukaryotic initiation factor [Volvox carteri f. nagariensis]
 gi|300255785|gb|EFJ40071.1| eukaryotic initiation factor [Volvox carteri f. nagariensis]
          Length = 400

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 197/377 (52%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL  +++  +   G+ KP+ IQ + +  ++Q  DV   AQ+GTGK++   +    
Sbjct: 28  TFDSMGLKEELLRGLYAYGFEKPSAIQQRAVLPIVQGRDVIAQAQSGTGKSSMISVSTCQ 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++         + LIL PTRELA Q        G   N+     IGG       +KL+ 
Sbjct: 88  LVDVTLRE---CQVLILSPTRELAQQTEKVILAVGDFMNIQAHACIGGKSLGEDIRKLDS 144

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I+ L++DEAD ML   F   I +I   +P   Q +
Sbjct: 145 GVHVVSGTPGRVFDMIQRRNLRTRHIKTLILDEADEMLAKNFKDQIYDIYRYLPPETQVV 204

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P R+ V     T E I+  FVA   +  K   L       
Sbjct: 205 LVSATLPAEVLEMTNKFMTDPIRVLVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 262

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  ++++ 
Sbjct: 263 TLTITQAVIFCNTKRKVDWLTEKMRQNNFTVASMHGDMVQKEREAIMGEFRSGAARVLIT 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 323 TDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDIRILRDIE 382

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 383 QYYSTQIDEMPMNVAEL 399


>gi|154684961|ref|YP_001420122.1| YdbR [Bacillus amyloliquefaciens FZB42]
 gi|154350812|gb|ABS72891.1| YdbR [Bacillus amyloliquefaciens FZB42]
          Length = 511

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 147/383 (38%), Positives = 224/383 (58%), Gaps = 8/383 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  LS  ++ ++   G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F +P++
Sbjct: 20  ITFQDFQLSSDLMKSINRMGFEEATPIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIPLV 79

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + +++ PTRELA QV++   K G++    V  + GG     Q + L+
Sbjct: 80  EKMNP---ESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALK 136

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+LDH NR  + +NN+  +V+DEAD ML+MGFI  I++I S VP   QT
Sbjct: 137 KNPHIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSDHQT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +++++E F+  P+ ++V     T   I+           +K       L 
Sbjct: 197 LLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQ---FYLEVQERKKFDTLTRLL 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM  L  FKEG I+++V
Sbjct: 254 DIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFDVP   E+Y+HRIGRTGRAG+ G A T +   +   + AI
Sbjct: 314 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 373

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           E+  ++K+D +     +L+  LE
Sbjct: 374 EQTTKRKMDRMK--EPTLDEALE 394


>gi|149912233|ref|ZP_01900811.1| ATP-dependent RNA helicase [Moritella sp. PE36]
 gi|149804692|gb|EDM64744.1| ATP-dependent RNA helicase [Moritella sp. PE36]
          Length = 421

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 129/383 (33%), Positives = 201/383 (52%), Gaps = 6/383 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  L L P+++ A+ D   V+PT IQ + +P  ++  D+   A TGTGKT +F+LP +
Sbjct: 1   MDFESLDLDPQLIVALTDNNLVQPTLIQQQVLPTAMEGRDILASAPTGTGKTLAFLLPAI 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L     R   P  + IL PTRELA+QV    +      +  V+++ GG+ +    + L
Sbjct: 61  QHLLDFPRRELGPGRVLILTPTRELASQVFQQAKMLAAYTDHKVSMVTGGVDYALHAEVL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   D++I TPGR+L++  R       IE+L++DEADRMLDMGF   ++ IT+ +   +Q
Sbjct: 121 KNNLDIVIATPGRLLEYIRRDAFECAAIEVLILDEADRMLDMGFYDDVKRITNEMTRRQQ 180

Query: 180 TLLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           T+LFSAT     + + +E  L  P     N        I            K+       
Sbjct: 181 TMLFSATLEGRGIDRFAEELLNEPVEFTANPSRREKAKIHQFMHHVDNHAHKQAL--LVH 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               ++    I+F   ++ +  L   L+ Q      + G +DQ  R + L+ FK   +++
Sbjct: 239 WLRDESTTRSIVFVKTRERLAELVSYLQSQDIPCAYLRGEMDQAKRTRSLNQFKNDKVKV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+ DV HVFNFD+P  AE Y+HRIGRT RAG+ G A +LV   D++   
Sbjct: 299 LIATDVAARGIDVQDVSHVFNFDLPRSAEIYVHRIGRTARAGKKGTAISLVEAHDLRIFG 358

Query: 359 AIEKLIEKKVDWLNGDLSSLNPP 381
            IE+  E+ +      +  L P 
Sbjct: 359 KIERYTEETIKR--RVIQDLKPK 379


>gi|262173979|ref|ZP_06041656.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
 gi|261891337|gb|EEY37324.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
          Length = 422

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 150/410 (36%), Positives = 229/410 (55%), Gaps = 11/410 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGL P ++  + D G V PTPIQ + IP VLQ  DV   AQTGTGKTA+F LP++
Sbjct: 6   ITFSQLGLDPHLLNTLSDLGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65

Query: 61  TILEKGRARVRMPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               +           I      PTRELA QV D+ + Y K   L +  + GG   + Q 
Sbjct: 66  QRFIEQPWVREENSKEIRALVLVPTRELAQQVLDSMQAYAKGTELKIVAVYGGTSMKVQL 125

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G D+LI TPGR+LDH +   L +  +E+LV+DEADRMLDMGF+P +Q +   +  
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSAT   +++ V+   +++P  ++V   +STAET+       Y    K+   L 
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPVEVQVTPSNSTAETV---QQMVYPVDKKRKRELL 242

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L      +  ++F   ++    L   L+  G    +I+G+  Q +R K L +FK G +
Sbjct: 243 SYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKVGKV 302

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L++ ++   
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEEPQ 362

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           ++AIE+L+  ++  +WL G   S  P + + +  + +  R       K+ 
Sbjct: 363 LEAIERLLNTRLPQEWLKGFEPS--PVVREENSPRRSSGRSAEKRKMKAK 410


>gi|258620256|ref|ZP_05715295.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
           VM573]
 gi|258623978|ref|ZP_05718931.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
           VM603]
 gi|258583772|gb|EEW08568.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
           VM603]
 gi|258587614|gb|EEW12324.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
           VM573]
          Length = 422

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 150/410 (36%), Positives = 229/410 (55%), Gaps = 11/410 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGL P ++  + D G V PTPIQ + IP VLQ  DV   AQTGTGKTA+F LP++
Sbjct: 6   ITFSQLGLDPHLLNTLSDLGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65

Query: 61  TILEKGRARVRMPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               +           I      PTRELA QV D+ + Y K   L +  + GG   + Q 
Sbjct: 66  QRFIEQPWVREENSKEIRALVLVPTRELAQQVLDSMQAYAKGTELKIVAVYGGTSMKVQL 125

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G D+LI TPGR+LDH +   L +  +E+LV+DEADRMLDMGF+P +Q +   +  
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSAT   +++ V+   +++P  ++V   +STAET+       Y    K+   L 
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPVEVQVTPSNSTAETV---QQMVYPVDKKRKRELL 242

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L      +  ++F   ++    L   L+  G    +I+G+  Q +R K L +FK G +
Sbjct: 243 SYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L++ ++   
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEEPQ 362

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           ++AIE+L+  ++  +WL G   S  P + + +  + +  R       K+ 
Sbjct: 363 LEAIERLLNTRLPQEWLKGFEPS--PVVREENSPRRSSGRSAEKRKMKAK 410


>gi|50420221|ref|XP_458643.1| DEHA2D04048p [Debaryomyces hansenii CBS767]
 gi|74602737|sp|Q6BT27|FAL1_DEBHA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49654310|emb|CAG86782.1| DEHA2D04048p [Debaryomyces hansenii]
          Length = 399

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 203/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+  P+ IQ + I  ++   D    AQ+GTGKTA+F + ML 
Sbjct: 27  TFESMNLKTDLLKGIYGYGFEAPSAIQSRAIMQIISGKDTIAQAQSGTGKTATFSIGMLE 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    + +  + LIL PTRELA Q+    +  G   N+     IGG       KKL++
Sbjct: 87  VIDT---KSKDCQALILSPTRELAQQIQSVVKHLGDYMNVHTHACIGGTHVGEDIKKLQQ 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR++D   R  L   NI+++++DEAD ++  GF   I  I   +P   Q +
Sbjct: 144 GQQIVSGTPGRVVDMIKRRNLATRNIKMMILDEADELMTKGFKEQIYEIYRYLPPGVQVV 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT++ E+ +V+  F  +P +I V     T E I+   +    +  K   L       
Sbjct: 204 VVSATLSREVLEVTGKFTTDPVKILVKRDDITLEGIKQYHIQCEKEDWKFDTLCDL--YD 261

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K  V  L   ++K  F+V A+HG++ Q  R  I+++F+ G  +++++
Sbjct: 262 SLTITQAVIFCNTKVKVNWLTDQMKKANFTVVAMHGDMKQDERDSIMNDFRTGNSRVLIS 321

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENY+HRIGR+GR GR G A  LV KED+  +  IE
Sbjct: 322 TDVWARGIDVQQVSLVINYDLPTDKENYVHRIGRSGRFGRKGVAINLVTKEDVDELRDIE 381

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++  +  +++ +
Sbjct: 382 RFYRIRIKEMPVNVNDI 398


>gi|114564866|ref|YP_752380.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114336159|gb|ABI73541.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 634

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 136/372 (36%), Positives = 220/372 (59%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ ++ + GY  PTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L 
Sbjct: 6   TFRELGLSESLLRSLDELGYENPTPIQAASIDPLMAGKDIIGQAQTGTGKTGAFALPLLN 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++    ++  P+ L+L PTRELA QVA+ F  Y K       L I  G   + Q   L+
Sbjct: 66  KIDM---KINAPQILVLAPTRELAVQVAEAFGSYAKFMKGFHVLPIYGGQSMQQQLNALK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG L ++N++ LV+DEAD ML MGFI  I+ +    P   Q 
Sbjct: 123 RGPQVIVGTPGRVMDHMRRGTLKLDNLKALVLDEADEMLKMGFIDDIEWVLEHKPADSQL 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +++++V+   L NP  I + +  +T E+I+  +V        +  +    ++
Sbjct: 183 ALFSATMPEQIKRVAAKHLSNPVNISIASSQTTVESIDQRYVQVSQHNKLEALVRVLEVE 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + +   IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++
Sbjct: 243 NTEGI---IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGKLDILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +GHV N+D+P  +E Y+HRIGRTGRAGR G A   V   +++ +  I
Sbjct: 300 ATDVAARGLDVERIGHVVNYDIPYDSEAYVHRIGRTGRAGRTGMAILFVTNREMRMLRTI 359

Query: 361 EKLIEKKVDWLN 372
           E+    ++  + 
Sbjct: 360 ERATNSRISPMK 371


>gi|226228176|ref|YP_002762282.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
 gi|226091367|dbj|BAH39812.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
          Length = 374

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 153/371 (41%), Positives = 219/371 (59%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGL+  ++ A+ DAGY +PTPIQ + IPL L   D+ G+AQTGTGKTASF LP++
Sbjct: 1   MTFADLGLARPLLDALHDAGYERPTPIQREAIPLALLGRDLIGLAQTGTGKTASFTLPVV 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  G  R R    L+L PTREL  QV ++  KY     + V  + GG+ +E Q K L 
Sbjct: 61  HRLLGGPRRTR---VLVLTPTRELCLQVEESVRKYSSRSPVDVIPVYGGVGYEPQEKALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR+LDH  +  +    +E LV+DEADRMLDMGF P I  I   +P  RQT
Sbjct: 118 RGVDVVVATPGRLLDHLEKRNVDFTYLETLVLDEADRMLDMGFAPQINRIVDQIPRYRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++ +   +L+ P  ++V   SS A T+ H           +  +      
Sbjct: 178 LLFSATMPPEVEALGRKYLRKPVVVQVGRRSSAATTVTHAVYPVPRHRKNELLVHLLTNS 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++F   K     +   L +      A+H +  QR R++ L +FK G ++++V
Sbjct: 238 DH---ESVLVFTRTKSGADRVVSDLAQAKIHAGAMHADKSQRERIQALEDFKSGKLRVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A RGLDI  + HV NFDVP + E+Y+HRIGRTGRA   G A+T ++ E+I  +  I
Sbjct: 295 ATDIAQRGLDISGITHVINFDVPQQPEDYVHRIGRTGRAASTGDAYTFMSAEEIGMVRTI 354

Query: 361 EKLIEKKVDWL 371
           E+ I +++  +
Sbjct: 355 ERTIGQEIPRV 365


>gi|225011497|ref|ZP_03701935.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-2A]
 gi|225004000|gb|EEG41972.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-2A]
          Length = 415

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 137/374 (36%), Positives = 222/374 (59%), Gaps = 6/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   ++ A+   GY +PTPIQ + IP++L+ HD+ G+AQTGTGKTA+F +P+L
Sbjct: 1   MTFKDLKLELPILKALEKQGYTQPTPIQEQAIPILLKGHDLLGVAQTGTGKTAAFGIPIL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                        R  + L++ PTRELA Q+A+NF  Y +  +L   ++ GG+    Q  
Sbjct: 61  NHLLKENNSGQGKRKIKALVVTPTRELAIQIAENFTDYSQFTHLRNTVIFGGVKQSKQVA 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+L+ TPGR+LD  N+G +   +++ +V+DEAD+MLDMGFI  ++ I + +P  
Sbjct: 121 SLQQGVDILVATPGRLLDLMNQGYITFRDLKYVVLDEADQMLDMGFIHDVKKIIAKLPPN 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+L FSATM   + ++S+  L + +R+ +    +TAE ++               +   
Sbjct: 181 RQSLFFSATMPKTIVELSQKMLGDFERVTIKPEQATAEKVKQGVYFVSKNNKPNLLIHLL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             + Q    + ++F   K     +  +L+K      AIHGN  Q  R K L  FK+G+++
Sbjct: 241 DQRPQ---DSVLVFSRTKHGANKIVKTLDKAKIKSAAIHGNKSQAQRQKALGEFKDGSLK 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARG+D+ D+  V N+D+PN +E Y+HRIGRTGRA   G A +    ++  ++
Sbjct: 298 VLIATDIAARGIDVDDLALVINYDLPNVSETYVHRIGRTGRASASGIALSFCMGDERPYL 357

Query: 358 DAIEKLIEKKVDWL 371
             IEKLI+++V  +
Sbjct: 358 KDIEKLIKQQVPRM 371


>gi|196012612|ref|XP_002116168.1| hypothetical protein TRIADDRAFT_30653 [Trichoplax adhaerens]
 gi|190581123|gb|EDV21201.1| hypothetical protein TRIADDRAFT_30653 [Trichoplax adhaerens]
          Length = 976

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 139/427 (32%), Positives = 221/427 (51%), Gaps = 7/427 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++A  GLS K++ ++    Y KPTP+Q + IP ++   DV GIA+TG+GKT +F+LPM  
Sbjct: 307 NWAQCGLSVKLLDSLKRVKYEKPTPVQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFR 366

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      +    P  LI+ PTRELA Q+     ++ K   + V  + GG     Q  +L
Sbjct: 367 HILDQNALSPGDGPIGLIMTPTRELAIQITRECRRFTKAIGMHVVCVYGGTGISEQIAEL 426

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     N     +  +  LV+DEADRM DMGF P +  I   +  
Sbjct: 427 KRGAEIVVCTPGRMIDMLLANNGRVTNLRRVTYLVLDEADRMFDMGFEPQVMKIVESIRP 486

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   L  P  IEV   S                   K   L 
Sbjct: 487 DRQTVMFSATFPRQMEALARKMLTKPIEIEVGGRSIVCSD--IEQHVVIINEEDKFLKLL 544

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + ++F  ++++   L   L K  +   ++HG +DQ  R   + ++K G I
Sbjct: 545 ELLGLYQPYGSVLVFVEKQESSDQLLKDLMKASYPCLSLHGGMDQSDRDSTIVDYKNGVI 604

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+ ++  V N+D PN  E+Y+HR GRTGRAG  G A+TL+ ++  K+
Sbjct: 605 KLLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRAGRTGRAGNKGYAYTLITEDQGKY 664

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I + +E   + +   L  L    ++   AQ  H  KN     K   FD  ++   ++
Sbjct: 665 AGDIIRALELSKNSIPESLEKLWSDYKEELKAQGKHIAKNRGFSGKGFKFDEAERAQMNE 724

Query: 417 KSHIPLK 423
                 K
Sbjct: 725 FKKQQKK 731


>gi|171059329|ref|YP_001791678.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170776774|gb|ACB34913.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 479

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 171/470 (36%), Positives = 249/470 (52%), Gaps = 17/470 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL+  ++ AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFDDLGLAQPILRAVHEEGYSIPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L  G            R LIL PTRELAAQV ++   YGK   LT  ++ GG+    Q
Sbjct: 61  HKLAAGEPVKNRNGRPAIRALILTPTRELAAQVEESVRTYGKYLQLTSMVIFGGVGMGPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L +G D+L+ TPGR+LDH  +G + ++ ++  V+DEADRMLDMGF+  I+ + +++P
Sbjct: 121 VDRLRKGVDILVATPGRLLDHHQQGTIDLSQVQFFVLDEADRMLDMGFVHDIKKVLAIIP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE++ +++  L  P+ IEV   ++TAETI    +    +  K     
Sbjct: 181 AKKQSLLFSATFSDEIKALADRLLNKPQVIEVARRNTTAETIAQRVIKVGRENKKDL--- 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L         ++F   K     LC  L K   S  AIHGN  Q +R K L+ FK G 
Sbjct: 238 LAHLIKSQNWHQVLVFTRMKHGANRLCEFLNKNDISAMAIHGNKSQGARTKALAEFKTGD 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARG+DI  + HV N+++PN  E+Y+HRIGRTGRAG  G+A +LV  ++  
Sbjct: 298 LTVLVATDIAARGIDIDMLPHVINYELPNVPEDYVHRIGRTGRAGAQGEALSLVCVDEEG 357

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ---KSTGFDRRK 410
            +  IEKLI++ +  + + G         E I + +    R  N  P+   + +G    K
Sbjct: 358 FLADIEKLIKRSIAREVVAGFEPDPGERAEPIQVGR----RTLNGAPRGAHRPSGNGAPK 413

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
             +    S  P   +   S                R   P      ++G 
Sbjct: 414 PTHRGGNSSAPRSSAGHASGNGNHSAHARPAGQQPRSGQPNGAGRSSQGT 463


>gi|330818246|ref|YP_004361951.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           gladioli BSR3]
 gi|327370639|gb|AEA61995.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           gladioli BSR3]
          Length = 505

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 161/391 (41%), Positives = 233/391 (59%), Gaps = 9/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTEPTPIQTQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRARVRMPRTL----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L    A     +      IL PTRELAAQV ++   YGK   L   ++ GG+    Q 
Sbjct: 61  QRLNASTAAQAGGKRAVRALILTPTRELAAQVEESVRAYGKYLKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + ++ ++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSQLDILVLDEADRMLDMGFIHDIKRVLARLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            ++     
Sbjct: 181 KRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETIAQKIYPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK GT+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLGKDGISALAIHGNKSQSARTRALTEFKAGTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV N+++PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + 
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKI 385
           +  IEKLI++++  + + G     N   E I
Sbjct: 358 LRDIEKLIKREIPQEVIAGFEPDPNAKPEPI 388


>gi|209693767|ref|YP_002261695.1| ATP-dependent RNA helicase RhlB [Aliivibrio salmonicida LFI1238]
 gi|226739529|sp|B6EPA4|RHLB_ALISL RecName: Full=ATP-dependent RNA helicase rhlB
 gi|208007718|emb|CAQ77831.1| ATP-dependent RNA helicase RhlB [Aliivibrio salmonicida LFI1238]
          Length = 434

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 142/426 (33%), Positives = 213/426 (50%), Gaps = 8/426 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL P+V+  +   G++  TPIQ K +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADLGLEPQVLDGLNAKGFINCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLAATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      ++  PR +I+ PTRELA Q+ ++ E    +  L  AL  GG  +E Q K
Sbjct: 70  HLLTTPAPEGRKITQPRAIIMAPTRELAIQIYNDAESLIASTGLKAALAYGGERYEKQQK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +E G D+LI T GRI+D + +G++    I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VIEAGVDILIGTTGRIIDFYKQGQIDFKAIQVVVLDEADRMFDLGFIKDIRFVFRRMPAP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T   +     F    +  E        +T        +   +     L Q
Sbjct: 190 AERLNMLFSATLSYRVQELAFEH-MQEPEHVVVEPDQKTGHLITEELFYPSNDHKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L      V  + G++ Q+ R +IL  F +G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHKCELVWGHLAADKHRVGLLTGDVPQKKRERILEEFTKGEVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFNFD+PN AE+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGESGNSISFACEEYAINL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            AIE+ IE  +   + D S+L   LE +        R        S    R+  N    +
Sbjct: 369 PAIEEYIEHSIPQSDYDTSAL---LEDLPAPIRLQRRPPQNRRNGSNNGQRQSGNRKHSR 425

Query: 418 SHIPLK 423
              P  
Sbjct: 426 PRPPRS 431


>gi|322833775|ref|YP_004213802.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
 gi|321168976|gb|ADW74675.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
          Length = 470

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 159/390 (40%), Positives = 234/390 (60%), Gaps = 8/390 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           M F  LGLS +++ AV + GY +PTPIQ + IP+VL+  D+   AQTGTGKTA F LP  
Sbjct: 1   MSFDSLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            ML+         R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    Q  
Sbjct: 61  NMLSHTNAQFKGRRPVRALILTPTRELAAQIGENVQAYSKYLTLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVLI TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLIATPGRLLDLEHQRAVDLSQVEILVLDEADRMLDMGFIHDIRRLLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L NP  +EV   ++ +  I     + +    K+   L  
Sbjct: 181 RQNLLFSATFSDEIKGLASKLLTNPASVEVARRNTASAQI---EQSVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   K  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK G+++
Sbjct: 238 QMIGEGDWKQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKAGSVR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDMLPHVVNYELPNVPEDYVHRIGRTGRAEATGEAISLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKI 385
             IE+L+++++    L G     +   E I
Sbjct: 358 RDIERLLKREIPRIALEGYEPDPSIKAEPI 387


>gi|302327262|gb|ADL26463.1| ATP-dependent RNA helicase DeaD [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 739

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 133/378 (35%), Positives = 210/378 (55%), Gaps = 7/378 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGLSP+V+ AV  AGY  P+PIQ K IP +LQ  ++ G AQTGTGKTA+F LP+L
Sbjct: 61  VTFDDLGLSPEVLEAVKLAGYETPSPIQAKAIPALLQGANLLGTAQTGTGKTAAFSLPLL 120

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + +            L+L PTRELA QV+D  ++Y         + +  G     Q + L
Sbjct: 121 SRINFNGRETS---MLVLTPTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQLRAL 177

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +R A +++ TPGR++DH  RG + +  ++ +V+DEAD MLDMGF+  ++ I   +P   Q
Sbjct: 178 KRKASIVVATPGRLIDHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPADAQ 237

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM D ++K+ +  L   +   +   ++T E I           ++        +
Sbjct: 238 RALFSATMPDSVKKIIDQHLGEYEEARIEGKTTTVENI---CQRYLLVKNEHKIEALARV 294

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     +IF   K+N   +   LE +GF+V  ++G++ Q  R + ++  K G + ++
Sbjct: 295 LEGEEFDGVLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIV 354

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  +  V N+D+P   E+Y+HRIGRTGRAGR G A   +   + + +  
Sbjct: 355 VATDVAARGIDVDRISLVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFITPREKRMLKT 414

Query: 360 IEKLIEKKVDWLNGDLSS 377
           IEK   + +D +    S 
Sbjct: 415 IEKATRQPIDVMEMPTSE 432


>gi|254294585|ref|YP_003060608.1| DEAD/DEAH box helicase [Hirschia baltica ATCC 49814]
 gi|254043116|gb|ACT59911.1| DEAD/DEAH box helicase domain protein [Hirschia baltica ATCC 49814]
          Length = 769

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 151/373 (40%), Positives = 226/373 (60%), Gaps = 5/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L+  V+ A+   GY  PTPIQ + IPLV++  D+ GIAQTGTGKTA+F LP+L 
Sbjct: 3   KFSDFDLASPVLKALDKEGYETPTPIQAQAIPLVMEGGDILGIAQTGTGKTAAFALPLLH 62

Query: 62  ILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L            R L++ PTRELA+Q+A+ F KYG+  +L V  + GG+P   Q + L
Sbjct: 63  HLCKLPDMPGPGAVRCLVIAPTRELASQIAEAFSKYGQCLSLRVLKVFGGVPIRKQMRDL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGADVL+ TPGR++D   +G + ++ +E LV+DEAD+MLD+GFI  ++ I + VP  RQ
Sbjct: 123 HRGADVLVATPGRLIDLMEQGAVDLSYVEKLVLDEADQMLDLGFIHPLRRIAAAVPKERQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM   +  ++  FL NPK++ +   S+TAE +                 L  + 
Sbjct: 183 TLFFSATMPSNVSGLANQFLTNPKKVSIAQESTTAERVTQTMSHVNQAQK---GPLLLVN 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +++   ++F   K     +   L   G    AIHGN  Q  R + L+ F+ G  +++
Sbjct: 240 LQDESIDRALVFTRTKHGADKVVSKLMNAGIRCGAIHGNKSQAQRERALNAFRNGDSKVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P V HVFN+++PN  E Y+HRIGRT RAGR GKA + V++++ K++  
Sbjct: 300 VATDIAARGIDVPGVSHVFNYEIPNVPEQYVHRIGRTARAGREGKAISFVSRDEKKYLLD 359

Query: 360 IEKLIEKKVDWLN 372
           I++ I  K+  ++
Sbjct: 360 IQRQIRMKIPIVD 372


>gi|261416325|ref|YP_003250008.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372781|gb|ACX75526.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 802

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 133/378 (35%), Positives = 210/378 (55%), Gaps = 7/378 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGLSP+V+ AV  AGY  P+PIQ K IP +LQ  ++ G AQTGTGKTA+F LP+L
Sbjct: 124 VTFDDLGLSPEVLEAVKLAGYETPSPIQAKAIPALLQGANLLGTAQTGTGKTAAFSLPLL 183

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + +            L+L PTRELA QV+D  ++Y         + +  G     Q + L
Sbjct: 184 SRINFNGRETS---MLVLTPTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQLRAL 240

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +R A +++ TPGR++DH  RG + +  ++ +V+DEAD MLDMGF+  ++ I   +P   Q
Sbjct: 241 KRKASIVVATPGRLIDHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPADAQ 300

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM D ++K+ +  L   +   +   ++T E I           ++        +
Sbjct: 301 RALFSATMPDSVKKIIDQHLGEYEEARIEGKTTTVENI---CQRYLLVKNEHKIEALARV 357

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     +IF   K+N   +   LE +GF+V  ++G++ Q  R + ++  K G + ++
Sbjct: 358 LEGEEFDGVLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIV 417

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  +  V N+D+P   E+Y+HRIGRTGRAGR G A   +   + + +  
Sbjct: 418 VATDVAARGIDVDRISLVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFITPREKRMLKT 477

Query: 360 IEKLIEKKVDWLNGDLSS 377
           IEK   + +D +    S 
Sbjct: 478 IEKATRQPIDVMEMPTSE 495


>gi|301169122|emb|CBW28719.1| ATP-dependent RNA helicase [Haemophilus influenzae 10810]
          Length = 439

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 138/398 (34%), Positives = 212/398 (53%), Gaps = 6/398 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP + 
Sbjct: 5   QFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++       
Sbjct: 65  HLLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QT
Sbjct: 125 TNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL       L N     V+   S  E  +      +A  ++    L     
Sbjct: 185 LLFSATLEGELLVDFAERLLNDPVK-VDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +  GI+F  ++++   L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 244 ETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPPL--EKIDIAQHNHAR 394
           ++  E+  K   L G      PP   E   +++   AR
Sbjct: 364 KRYTEEILKARILAGLEPRTKPPKDGEVKSVSKKQKAR 401


>gi|296159168|ref|ZP_06841995.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295890729|gb|EFG70520.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 491

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 176/456 (38%), Positives = 252/456 (55%), Gaps = 16/456 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+P ++ AV ++GY  PTPIQ + IP+VL   D+ G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L    +    P        IL PTRELA QVA N + Y K+  L  A++ GG+    Q+
Sbjct: 72  RLLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQS 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 EQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L++P+ IEV   +STA  +                +  
Sbjct: 192 ERQTLLFSATFSGEIKKLAATYLRDPQTIEVARSNSTATNVRQIVYEVAEGDKTGAVVQL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +  +K  I+FCN K     L  SLE+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 ---IRERGLKQVIVFCNSKIGASRLARSLERDGVIATAIHGDRSQNERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKKVDW--------LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           +  IEKLI++ ++         +        P  E+    + +   +       S  FDR
Sbjct: 369 LADIEKLIKRPLEVQRLTVEAPVRHHHEERAPRRERSSEGREDRGGRRRTGASSSGSFDR 428

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLG 444
              + +       LK  E      + ++E DA S  
Sbjct: 429 PHHHRAQPVDDFFLKPYEPSPASVRKVEEADAASAA 464


>gi|284007123|emb|CBA72399.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
          Length = 438

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 161/439 (36%), Positives = 247/439 (56%), Gaps = 18/439 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS +++ A+ +AGY KPT IQ + IP +L   D+   AQTGTGKTA FVLP+L
Sbjct: 7   MCFNSLGLSAEILSAIKEAGYEKPTSIQQQAIPAILAGKDLLASAQTGTGKTAGFVLPIL 66

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L +    V   +  R LIL PTRELAAQV  N   Y +   L   ++ GG+    Q  
Sbjct: 67  QHLSQTPVVVKGKKPVRALILAPTRELAAQVGQNVRNYSQFLRLKSLVVFGGVSINPQMM 126

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD   +  + ++ +EILV+DEADRMLDMGFI  I+ I   +P  
Sbjct: 127 KLRGGVDILVATPGRLLDLVQQNAVSLSQVEILVLDEADRMLDMGFIHDIRRILDKLPTK 186

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT ++++++++ + L NP  +     +      +      +    ++ A L  
Sbjct: 187 RQNLLFSATFSNQIKQLANSLLHNPTIL---EVAPRNSASQQVKQLIHFVDKRRKAELLS 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   +  +  ++F   K     L   L K G    AIHGN  Q +R + L++FK G I+
Sbjct: 244 YLIGSENWQQVLVFTRTKYGANRLTEHLIKDGIKAMAIHGNKSQGARTRALADFKSGAIR 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + +V N+++PN AE+Y+HRIGRTGRA   G A +LVA ++   +
Sbjct: 304 VLVATDIAARGLDIEQLPYVVNYELPNVAEDYVHRIGRTGRAAATGLAVSLVAIDEQSLL 363

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            AIE+L+++ +  +   L+   P          +   +  P+PQK     + +++ +++ 
Sbjct: 364 TAIERLLKQSIPRM--ALAGYEP----------DPTIRPEPMPQKKPANKQHRRHSAAKV 411

Query: 418 SHIPLKESEKISKLQQDIQ 436
           SH   K  ++ +    D +
Sbjct: 412 SHANGKPQKQRTTRNVDNK 430


>gi|15030137|gb|AAH11321.1| Ddx27 protein [Mus musculus]
          Length = 572

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 152/460 (33%), Positives = 241/460 (52%), Gaps = 23/460 (5%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           + LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L  L  
Sbjct: 1   MNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIY 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
              +  + R L+L PTREL  QV    ++  +  ++T  L +GG+  ++Q   L    D+
Sbjct: 61  KPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDI 120

Query: 126 LICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           LI TPGR++DH  N     +++IE+L++DEAD+MLD  F   ++ I  +    RQT+LFS
Sbjct: 121 LIATPGRLIDHLHNCPSFHLSSIEVLILDEADKMLDEYFEEQMKEIIRMCSHHRQTMLFS 180

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           ATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L  +  
Sbjct: 181 ATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMRTF 240

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++VA+D+
Sbjct: 241 TDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDV 300

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +E+ K +  I K  
Sbjct: 301 AARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAA 360

Query: 365 EK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           +                  K++ L  D+ ++     +    Q + A+ +    Q+     
Sbjct: 361 KAPVKARILPQDVILKFRDKIEKLEKDVYAVLQLEAEEKEMQQSEAQID--TAQRLLAKG 418

Query: 408 RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
           +   +   ++S    KE  K  K+ + +QE D   L  RG
Sbjct: 419 KETADQEPERSWFQTKEERKKEKIAKALQEFD---LALRG 455


>gi|328552138|gb|AEB22630.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens TA208]
          Length = 494

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 147/383 (38%), Positives = 224/383 (58%), Gaps = 8/383 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  LS  ++ ++   G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F +P++
Sbjct: 3   ITFQDFQLSSDLMKSINRMGFEEATPIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIPLV 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + +++ PTRELA QV++   K G++    V  + GG     Q + L+
Sbjct: 63  EKMNP---ESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+LDH NR  + +NN+  +V+DEAD ML+MGFI  I++I S VP   QT
Sbjct: 120 KNPHIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +++++E F+  P+ ++V     T   I+           +K       L 
Sbjct: 180 LLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQ---FYLEVQERKKFDTLTRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM  L  FKEG I+++V
Sbjct: 237 DIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFDVP   E+Y+HRIGRTGRAG+ G A T +   +   + AI
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           E+  ++K+D +     +L+  LE
Sbjct: 357 EQTTKRKMDRMK--EPTLDEALE 377


>gi|307709536|ref|ZP_07645990.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
 gi|307619667|gb|EFN98789.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
          Length = 523

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 151/413 (36%), Positives = 238/413 (57%), Gaps = 9/413 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIRT---EEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK---IDIAQHNHARKNNPIPQKSTGFDRRK 410
           E L +K++  L    +      +K   +   + + A +      +  G D RK
Sbjct: 355 ENLTKKRMKGLKPASAEEAFQAKKQVALKKIERDFADETIRANFEKFGKDARK 407


>gi|308172326|ref|YP_003919031.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605190|emb|CBI41561.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens DSM 7]
          Length = 511

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 147/383 (38%), Positives = 224/383 (58%), Gaps = 8/383 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  LS  ++ ++   G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F +P++
Sbjct: 20  ITFQDFQLSSDLMKSINRMGFEEATPIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIPLV 79

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + +++ PTRELA QV++   K G++    V  + GG     Q + L+
Sbjct: 80  EKMNP---ESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALK 136

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+LDH NR  + +NN+  +V+DEAD ML+MGFI  I++I S VP   QT
Sbjct: 137 KNPHIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +++++E F+  P+ ++V     T   I+           +K       L 
Sbjct: 197 LLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQ---FYLEVQERKKFDTLTRLL 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              + +  I+F   K+ V  L  +L  +G++   IHG++ Q  RM  L  FKEG I+++V
Sbjct: 254 DIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFDVP   E+Y+HRIGRTGRAG+ G A T +   +   + AI
Sbjct: 314 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 373

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           E+  ++K+D +     +L+  LE
Sbjct: 374 EQTTKRKMDRMK--EPTLDEALE 394


>gi|300715940|ref|YP_003740743.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
 gi|299061776|emb|CAX58892.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
          Length = 480

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 159/390 (40%), Positives = 239/390 (61%), Gaps = 6/390 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           M F  LGL+  ++ AV + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP  
Sbjct: 1   MSFDSLGLNADILRAVAEQGYDEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPVL 60

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L+         R  R LIL PTRELAAQ+ +N + Y K  +L   ++ GG+    Q  
Sbjct: 61  QLLSSHNPHPKGRRPVRALILTPTRELAAQIGENVQDYSKYLDLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  L ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRSGVDVLVATPGRLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++E  L NP+ + V   ++ +E I       +    K+   L  
Sbjct: 181 RQNLLFSATFSDEIKGLAEKLLHNPEEVSVARRNTASEQI---TQHVHMVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +D  +  ++F   K    +L   L K G +  AIHGN  Q +R + LS+FKEG I+
Sbjct: 238 FLIGRDNWQQVLVFTRTKHGANHLAEQLNKDGITSAAIHGNKSQGARTRALSDFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++ HV NF++PN  E+Y+HRIGRTGRA   G+A +LV  +++K +
Sbjct: 298 VLVATDIAARGIDISELPHVVNFELPNVPEDYVHRIGRTGRAAATGEALSLVCVDELKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
             IE+++++++  +  +    +P ++   I
Sbjct: 358 RDIERVLKREIPRMAIEGYEPDPSIKAEPI 387


>gi|238019582|ref|ZP_04600008.1| hypothetical protein VEIDISOL_01451 [Veillonella dispar ATCC 17748]
 gi|237864281|gb|EEP65571.1| hypothetical protein VEIDISOL_01451 [Veillonella dispar ATCC 17748]
          Length = 432

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 152/447 (34%), Positives = 237/447 (53%), Gaps = 19/447 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+  +++ A+   G  +PTPIQ + IP+V + +DV   AQTGTGKT +F+LP+L 
Sbjct: 3   SFKSLGVCDELIQALQKQGIKEPTPIQEQAIPVVFKGNDVIAKAQTGTGKTLAFLLPILQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +      V   + LI+ PTREL  Q++D  ++ G   N+ +  LIGG   EAQ ++L R
Sbjct: 63  RVHT---DVHQEQVLIIAPTRELVKQISDEAKEIGSILNVDILPLIGGKTIEAQLQQLGR 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+LDH  RG L ++ I  +V+DEAD+ML MGF+P I+N+ S     RQ L
Sbjct: 120 RPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLISQTDANRQLL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ D+++ +++ ++  P  +       T E+I+        +           +  
Sbjct: 180 LFSATIPDKIRNLAKAYMSKPASVTAEGKHVTLESIDQRVYMMNTEEK---TQRLIKMIE 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I+FCN+++  V L + L   G ++  +HG++ Q  R +IL +F +   Q++VA
Sbjct: 237 EDNPFLAIVFCNKREGAVRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI  + HV+N+DVP   + YIHRIGRTGRAG  G A T    +D   +  IE
Sbjct: 297 TDIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGVAVTFATPQDESWLRRIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           + I+  +     D            I    +A    P   K +G  +   +Y S K+   
Sbjct: 357 RAIQATLTKYTKDGQ----------IKTKGNA-SAAPKRAKVSGKPKITSSYQSTKAKAH 405

Query: 422 LKESEKISKLQQDIQENDADSLGFRGN 448
                K +  +Q  +       G RG 
Sbjct: 406 KARGHKGANTRQ--RRTSTSQTGRRGK 430


>gi|118639520|gb|ABL09512.1| ATP-dependent RNA helicase [Halobacillus halophilus DSM 2266]
          Length = 395

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 147/410 (35%), Positives = 227/410 (55%), Gaps = 18/410 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+    +  +   G   PTPIQ + IP ++   DV   AQTGTGKT +F+LP+L 
Sbjct: 4   TFEQLGVRKDFIDKLTQEGIGAPTPIQQEAIPALMDGRDVIAQAQTGTGKTFAFLLPILQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +    A V+     I+ PTRELA Q+ +   K        +A+  GG     Q  KL+ 
Sbjct: 64  NIRVDEASVQAV---IVTPTRELALQITEEVRKLKTEDMHVLAVY-GGQDVAKQAHKLDG 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            A ++I TPGR+LDH  RG + +  ++ +V+DEAD+ML+ GF+P +++I S  P  +QT+
Sbjct: 120 QAHIVIATPGRMLDHLRRGTISLEAVKYMVLDEADQMLEAGFLPDVKDILSQTPEAKQTM 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+T ++ ++ +  L++P+RI V   + T E I       Y    +        +  
Sbjct: 180 LFSATITTQVNQLGKKILKDPRRITVQEKTVTLEGI---KQLVYETTDRAKQDTLIEIMQ 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      +IFC  K+    L  +L   GF    +HG++ Q  R K++  F++  IQ +VA
Sbjct: 237 EHRPFLALIFCRTKRRARKLNDALLSHGFEADELHGDLSQAKREKVMKRFRDAKIQYLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T  A +D + + +IE
Sbjct: 297 TDVAARGLDVEGVTHVFNYDIPQDPESYIHRIGRTGRAGGKGLAITFAAPKDRQALQSIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           K I++K++     L++L+P  EK            +  P+K T   +R++
Sbjct: 357 KSIKQKIER--RSLANLSPGKEK---------ESKSEPPKKKTKRSQRRR 395


>gi|329954895|ref|ZP_08295912.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
 gi|328526999|gb|EGF54010.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
          Length = 499

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 134/413 (32%), Positives = 231/413 (55%), Gaps = 8/413 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ K+IP++L+  D+  +AQTGTGKTA+++LP+L
Sbjct: 65  MKFSELKLNDNVLEALDAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPIL 124

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
             L +G         +++ PTRELA Q+    E +     ++   + GG     FE Q +
Sbjct: 125 NKLSEGGHPEDSINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKR 184

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 185 GLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKYLPKE 244

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++++ L +P  +++       +       A Y  Y  +   + +
Sbjct: 245 RQTIMFSATMPAKIQQLAQSILNDPAEVKLAVSKPAEKI----VQAAYVCYENQKLGIIR 300

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L ++ T +  IIF + K  V  +  +L++   +V  +H +++Q  R +++  FK G + 
Sbjct: 301 SLFAEQTPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRVN 360

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V +++  + 
Sbjct: 361 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNF 420

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
             IE  +EK++  +         P+ K   +     R N     + +G + + 
Sbjct: 421 KGIENFLEKEIYKIPVPEELGEAPVYK-PRSNDGRKRSNFKGGGRRSGGNEKS 472


>gi|319762158|ref|YP_004126095.1| dead/deah box helicase domain protein [Alicycliphilus denitrificans
           BC]
 gi|317116719|gb|ADU99207.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           BC]
          Length = 564

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 151/374 (40%), Positives = 232/374 (62%), Gaps = 8/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AV + GY  PTPIQ + IP VL  HD+   AQTGTGKTA+F LPML
Sbjct: 1   MTFEELKLAPAILQAVQEQGYQNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML 60

Query: 61  TILEKGR-----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L +G+        R  R L+L PTRELAAQV ++   YGK+ ++   ++ GG+    Q
Sbjct: 61  HRLAQGQAPTSRFGGRGVRALVLTPTRELAAQVEESVRTYGKHLDIKSTVIFGGVGMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++++RG DVL+ TPGR+LD   +G + ++ +EILV+DEADRMLDMGFI  ++ + +L+P
Sbjct: 121 IERIKRGVDVLVATPGRLLDLQQQGFIDLSQVEILVLDEADRMLDMGFIHDVKKVLALLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE+++++   L +P+ I+V   ++T + I            K+    
Sbjct: 181 KAKQSLLFSATFSDEIRELAAGLLNDPQSIQVTPRNTTVQRISQVIHPVGRGKKKQV--- 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              +  +      ++F   K    N+   L K G    A+HGN  Q +R + L  FK G 
Sbjct: 238 LLHIIQEHDWSQVLVFTRTKFGANNVAEYLTKHGVQAMALHGNKSQSARTQALEGFKSGQ 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ +VA+D+AARG+DI D+ HV N+++PN  E+Y+HRIGRTGRAG+ G+A +LV  ++  
Sbjct: 298 IRALVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGKEGQAVSLVCMDEEG 357

Query: 356 HIDAIEKLIEKKVD 369
            +  IE+  ++++ 
Sbjct: 358 FMMEIERFTKQEIP 371


>gi|167918160|ref|ZP_02505251.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BCC215]
          Length = 414

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 166/396 (41%), Positives = 232/396 (58%), Gaps = 18/396 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+ +++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   ++ A T+            +   +  
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                  ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 ---IRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           +  IEKLI++ +      L +L      +D+ +H H
Sbjct: 369 LADIEKLIKRTLS-----LETLA-----LDLPRHRH 394


>gi|167814905|ref|ZP_02446585.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           91]
          Length = 411

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 166/396 (41%), Positives = 232/396 (58%), Gaps = 18/396 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+ +++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   ++ A T+            +   +  
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                  ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 ---IRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           +  IEKLI++ +      L +L      +D+ +H H
Sbjct: 369 LADIEKLIKRTLS-----LETLA-----LDLPRHRH 394


>gi|167718732|ref|ZP_02401968.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           DM98]
          Length = 409

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 166/396 (41%), Positives = 232/396 (58%), Gaps = 18/396 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+ +++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   ++ A T+            +   +  
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                  ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 ---IRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           +  IEKLI++ +      L +L      +D+ +H H
Sbjct: 369 LADIEKLIKRTLS-----LETLA-----LDLPRHRH 394


>gi|284006674|emb|CBA71936.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase)
           [Arsenophonus nasoniae]
          Length = 615

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 139/406 (34%), Positives = 239/406 (58%), Gaps = 7/406 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 12  ISFADLGLSTPILSALNDLGYEKPSPIQQQCIPYLLDGCDVLGMAQTGSGKTAAFSLPLL 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++     ++ P+ L+L PTRELA QVA+   ++ K+      + +  G  +++Q + L
Sbjct: 72  HNIDIT---LKAPQILVLAPTRELAVQVAEAMGEFSKHMRSVNVVALYGGQRYDSQLRAL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  +++ TPGR+LDH  RG L ++++  LV+DEAD ML MGFI  ++NI S +P   Q
Sbjct: 129 RQGPQIVVGTPGRLLDHLKRGTLNLSHLRGLVLDEADEMLRMGFIEDVENIMSQIPSEHQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+++PK I + +  +T   I   + + Y     +        
Sbjct: 189 TALFSATMPEAIRRITRRFMKSPKEISIQSSVTTRPDITQSYWSVYGMRKNEA---LVRF 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + ++
Sbjct: 246 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSSALNGDMNQALREQTLERLKDGRLDIL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 306 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRAILFVDNRERRLLRN 365

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           IE+ +++ +  +    +++     +   A++   +  +   +K   
Sbjct: 366 IERTMKQPITEVELPSAAVLSERRQAKFAENIQKQLESGDLEKYRA 411


>gi|91088115|ref|XP_969791.1| PREDICTED: similar to GA21647-PA [Tribolium castaneum]
 gi|270012107|gb|EFA08555.1| hypothetical protein TcasGA2_TC006210 [Tribolium castaneum]
          Length = 451

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 139/412 (33%), Positives = 226/412 (54%), Gaps = 10/412 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++DLGL   +  A     + +P+ IQ + IP+ LQ  DV G+A+TG+GKTA+F LP+L 
Sbjct: 20  TWSDLGLVDVLCKACEQLKWAQPSKIQKEAIPVALQGKDVIGLAETGSGKTAAFALPILQ 79

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R      LIL PTRELA Q+++  E  G N  +  A+++GG+   +Q   L +
Sbjct: 80  SLLENPQRYFA---LILTPTRELAFQISEQIEALGANIGVKCAVIVGGMDMMSQALILAK 136

Query: 122 GADVLICTPGRI-LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +LI TPGR+     N     +  ++ LV+DEADR+L+M F   +  I  ++P  R T
Sbjct: 137 KPHILIATPGRLLDHLENTKGFNLKALKYLVMDEADRILNMDFEVEVDKILKVIPRERHT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT +++K+    L++P ++EV+T   T E ++  ++       K   +    + 
Sbjct: 197 FLFSATMTKKVKKLQRACLRDPVKVEVSTKYQTVEKLQQYYIFIPV---KFKDVYLVHIL 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N +     L   G +   +HG + Q  R+  L+ FK     +++
Sbjct: 254 NEMAGNSFMIFCSTCNNTIRTALLLRNLGLTAVPLHGQMSQNKRLAALTKFKAKNRSILI 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 314 STDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRI 373

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           E+LI K++     +   +    E++  +Q     +   +  K     +RKKN
Sbjct: 374 EQLIGKQLPLYKTEEDEVMVLQERVAESQRLAKMEMKDLGDKKG---KRKKN 422


>gi|327440903|dbj|BAK17268.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 436

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 144/441 (32%), Positives = 219/441 (49%), Gaps = 16/441 (3%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M  + D    P +  A+   G+ +PTPIQ + IPLVL+     G A TGTGKT SF+LP+
Sbjct: 1   MSKYTDYQFKPFLQDAIAKLGFTEPTPIQKEMIPLVLKGKSAIGQAHTGTGKTHSFLLPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  + + +  V+     I  PTRELA Q+ D   +  +   ++  L IGG   +    +L
Sbjct: 61  VERIVEEKQEVQAV---ITSPTRELAQQIFDALNQLVEGTEISTKLFIGGTDKQRTIDRL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +++ TPGRI D      LL++   ILV+DEAD   DMGFI  I    S +P   +
Sbjct: 118 KTQPQIVVGTPGRIKDLVKENALLVHTAPILVVDEADLAFDMGFIEDIDGFASHMPEKLE 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +FSAT+ ++L+   + ++ +P  I +N     AE I           SK        +
Sbjct: 178 MFVFSATIPEKLKPFLKKYMDSPIHIHMNDKRPVAEGI---DFVLVPVRSKARNTRLLEV 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    +IFCN +KN  ++   L +QG     IHG++  R R K++   ++   Q +
Sbjct: 235 IKGINPFLAVIFCNTRKNAESVASFLAEQGIRAGQIHGDLSPRDRKKMMKQVRDLEFQYI 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+DI  + HV N+++P   E +IHR+GRT RAG  G A TL   ED   +  
Sbjct: 295 VATDLAARGIDIQGISHVINYEIPEDLEFFIHRVGRTARAGSKGTAITLFQPEDEDAVVR 354

Query: 360 IEK----LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           IEK     ++K +   NG+ S L    ++   A     RK + I  K+    R+ K    
Sbjct: 355 IEKMGIPFVQKDIK--NGEWSDLK---DRHQRASRKGERKEDEIDAKAKALVRKPKKVKP 409

Query: 416 QKSHIPLKESEKISKLQQDIQ 436
                   E EK+ K ++ I+
Sbjct: 410 GYKRNMKWEMEKVKKRERRIK 430


>gi|238020287|ref|ZP_04600713.1| hypothetical protein GCWU000324_00164 [Kingella oralis ATCC 51147]
 gi|237867267|gb|EEP68273.1| hypothetical protein GCWU000324_00164 [Kingella oralis ATCC 51147]
          Length = 468

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 159/446 (35%), Positives = 253/446 (56%), Gaps = 13/446 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL  ++  A+ +  Y  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 4   FTELGLGHEICTALAEQNYQTPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 63

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+    Q  
Sbjct: 64  LKRYANASASPAMHPVRMLVLTPTRELADQIDQNTQNYIKNMPLRHTVLFGGVNMNKQTA 123

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G +++I T GR+LDH  +  + ++ +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 124 ELRAGCEIVIATVGRLLDHVKQKNINLSKVEIVVLDEADRMLDMGFIDDIRTIMQMLPKP 183

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT    ++K++++F+  P+ +EV   ++T   +E   ++  +   ++     +
Sbjct: 184 RQTLLFSATFAPAIRKLAQDFMNAPQIVEVAAQNTTNANVEEHVISIDSHRKREL---LE 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L     M   I+FC  K++   +   L ++G S  AIHG+  Q++R+ +L+ FK G ++
Sbjct: 241 RLIVDLNMNQVIVFCKTKQSADQVSRDLVRRGLSANAIHGDKSQQTRLDVLNQFKSGELR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P +AE+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 301 VLVATDVAARGLDIAELPFVVNYEMPTQAEDYVHRIGRTGRAGADGVAISLMDETEQKMY 360

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           +AI+ L   ++      +    P  E+   AQ   + KN   P+ S+  + R+    S+K
Sbjct: 361 EAIKALTGNELPI--SRIEGFEPHWEQ---AQAEGSLKNENSPRASSRRNEREPQERSEK 415

Query: 418 SHIPLKESEKISKLQQDIQENDADSL 443
           +        + S   Q+I   DA  +
Sbjct: 416 NDRRASSRNERSGRHQEIPTVDASKI 441


>gi|148258225|ref|YP_001242810.1| ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1]
 gi|146410398|gb|ABQ38904.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
           (rhlE gene) [Bradyrhizobium sp. BTAi1]
          Length = 469

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 173/470 (36%), Positives = 247/470 (52%), Gaps = 25/470 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L+  +  A+ +  Y  PTPIQ +TIP+ LQ  DV GIAQTGTGKTASF LP+L 
Sbjct: 3   SFQDFNLADALTRALKEENYTTPTPIQAQTIPIALQGRDVIGIAQTGTGKTASFALPILH 62

Query: 62  ILEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L + R + +     +L   PTREL+ Q+ D+F  YG++  LT AL IGG+P   Q + L
Sbjct: 63  RLLENRIKPQPKTARVLVLSPTRELSGQILDSFNTYGRHIRLTSALAIGGVPMGRQVRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR+LD      L +  +E LV+DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 123 MPGVDVLVATPGRLLDLVQGNALKLTQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM  ++ ++++  L++P R+ V   SST E I    +                 
Sbjct: 183 TLFFSATMPKDIAELADAMLRDPARVAVTPVSSTVERITQRVIQVDHSAKPSLLAQLL-- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              + +   ++F   K     +   LEK G    AIHGN  Q  R + L+ F+ G I+ +
Sbjct: 241 -KDEPVNRALVFTRTKHGADKVVKGLEKAGIPAQAIHGNKSQNHRERTLAAFRTGEIRTL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           VA+D+AARG+D+  V HV NFD+PN  E Y+HRIGRT RAG  G A +LVA  +++ ++ 
Sbjct: 300 VATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTARAGADGVAISLVAGADELSYLR 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP-IPQKSTGFDRRKKNYSSQK 417
            IE+L +  +           P  ++      + A    P  P    G    + N     
Sbjct: 360 DIERLTKTTL-----------PREDRRTPGHRDAAPAGQPQRPGGRPGMQNARANDGGNA 408

Query: 418 SHIPLKESE---KISKLQQDIQENDADSL--GFRGNMP--AFMLPKNRGK 460
           +  P +      K+  L  + QE +  S   G  G++   AF+  + R K
Sbjct: 409 AKGPRRRRRSNAKMPALPGNRQEPNRPSQGGGKSGSIQGVAFLHREGRPK 458


>gi|262401641|ref|ZP_06078207.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586]
 gi|262352058|gb|EEZ01188.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586]
          Length = 416

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 130/371 (35%), Positives = 204/371 (54%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L P ++ A+ + G+ +PT +Q + IP  L   DV   A TGTGKTA+F +P L 
Sbjct: 4   TFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L     R   P  + IL PTRELA QVA+  +   KN  L +  + GG+ ++     L 
Sbjct: 64  YLLDFPRRKPGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L++ +  +     IE L++DEADRMLDMGF P +  +++   + +QT
Sbjct: 124 TTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     ++  + + L++P  ++   P    + I   +        K         
Sbjct: 184 LLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVE---LLKK 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F   ++ + +L   LEK       I G + Q  R   +S F+EG + ++
Sbjct: 241 ILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PD+ HV NFD+P  A+ Y+HRIGRTGRAG+ G A +LV   D   +  
Sbjct: 301 LATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMAR 360

Query: 360 IEKLIEKKVDW 370
           +E+ I+++V  
Sbjct: 361 VERYIKEEVKE 371


>gi|189425674|ref|YP_001952851.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
 gi|189421933|gb|ACD96331.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 439

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 145/386 (37%), Positives = 213/386 (55%), Gaps = 6/386 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F      PKVV  +   GY  PTPIQ + IP ++  HD+ G+AQTGTGKTA+F LP+L
Sbjct: 1   MPFQQFSFHPKVVAGINALGYTTPTPIQAQAIPKIMAGHDLMGLAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +G  +    R L++ PTRELA Q+ D   + G+   L    + GG+    Q +KL+
Sbjct: 61  HRLMQGPRK--QVRALVIAPTRELAEQINDAMLELGQQTRLKSITVYGGVNVNPQIEKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G ++++  PGR+LDH N+G + + N+E+LV+DEAD+M DMGF+P I+ I   +P  RQT
Sbjct: 119 NGVEIVVACPGRLLDHINQGTIDLTNLELLVLDEADQMFDMGFLPDIRRILKHLPAQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  E++       +   R                  A Y         L   L 
Sbjct: 179 MLFSATMPAEIRG----LAREILRDPATVQVDNVAPAATVSHALYPVAQHLKTPLLMQLL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + +IF   K     +   LEK G++  ++ GN+ Q  R   +  F+ GT Q++V
Sbjct: 235 KHTDTDSVLIFTRTKHRAKRVGEQLEKAGYTAASLQGNLSQNRRQAAMDGFRNGTYQILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV N+D+P+ +E YIHRIGRTGRA R+G AFT+V  ED   + AI
Sbjct: 295 ATDIAARGIDVSQVSHVINYDIPDTSEAYIHRIGRTGRAARNGDAFTMVTDEDTLMVKAI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKID 386
           E+ +   ++    +    + P  + D
Sbjct: 355 ERTLGAAIERRTVEGFDYSVPAPRKD 380


>gi|120599766|ref|YP_964340.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120559859|gb|ABM25786.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 433

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 156/434 (35%), Positives = 237/434 (54%), Gaps = 11/434 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     SP+++ A+ D GY + TPIQ + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             + +  +       R LIL PTRELAAQVADN   Y K  N +V  + GG+  E Q +K
Sbjct: 61  QKMVEKPSETLKSNTRVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RGADV++ TPGR+L+H     + ++N++ LV+DEADRMLDMGF   IQ I   V   R
Sbjct: 121 LKRGADVIVATPGRLLEHLTACNVSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  ++K++ + +  P+ I V+  ++TA+T+         +  ++       
Sbjct: 181 QNLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F   ++    L   L   G     +HG   Q SR + L  F  G +++
Sbjct: 239 -IGKKNWQQVLVFTATREAADTLVKELNLDGIPSEVVHGEKGQGSRRRALREFVAGDVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDIP + +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLA 357

Query: 359 AIEKLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            IEKLI +K+  +       G    L   L+          R +N   Q       + + 
Sbjct: 358 DIEKLIGQKIRRVTVPGYEVGSRELLLKQLQTRRSFAKKQQRTDNAGAQVIAEKSMQGRR 417

Query: 413 YSSQKSHIPLKESE 426
              +    P K  +
Sbjct: 418 VKVKVGQAPSKAKK 431


>gi|311277865|ref|YP_003940096.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308747060|gb|ADO46812.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
          Length = 643

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 133/378 (35%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSRLSGLVLDEADEMLRMGFIEDVETIMAEIPDGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P   E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDTESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+L++  +  +    + L
Sbjct: 361 ERLMKLTIPEVELPNAEL 378


>gi|313157396|gb|EFR56819.1| putative ATP-dependent RNA helicase RhlE [Alistipes sp. HGB5]
          Length = 473

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 152/450 (33%), Positives = 233/450 (51%), Gaps = 9/450 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ AV + GYV PTPIQ + IP  L+  D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MTFKELNLIEPIMHAVAEKGYVTPTPIQEQAIPPALEGRDLMGCAQTGTGKTAAFTLPIL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                       R  + L+L PTRELA Q+ +    Y +  +L   ++ GG+    Q   
Sbjct: 61  QLLSARPRTKGRRPIKALVLTPTRELAIQIDECCRDYARYTDLRHCVIFGGVNQRPQVDA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RG D+L+ TPGR+LD   +G + +++I   V+DEADRMLDMGFI  I+ I  L+P  R
Sbjct: 121 LQRGVDLLVATPGRLLDLIGQGYVSLSDIRFFVLDEADRMLDMGFIHDIKRILPLLPKER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM  ++  ++ + L +P  + V  P+S  ETI    +       K   +    
Sbjct: 181 QTLFFSATMPSDIVTLANSMLHDPVHVTVTPPASVVETISQSVMFAEKAEKKDLLISLL- 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              + +  + ++F   K     +   L K G    AIHG+  Q +R + +++F+ G  ++
Sbjct: 240 --RERSEGSVLVFSRTKHGADRIARILTKAGIEGRAIHGDKSQGARERAMNDFRAGRCRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI ++  V N+D+P  AE Y+HRIGRTGRAG  G A    ++++   + 
Sbjct: 298 LIATDIAARGIDISELPLVINYDLPEVAETYVHRIGRTGRAGHDGTAIAFCSEDERPLLK 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST-GFDRRKKNYSSQK 417
            I+KL       L+ D   L P ++    +           P+++  G D R     S  
Sbjct: 358 DIQKLTGL---VLDPDSGRLTPGMQTDTKSPRKQESSQRSAPKQAAQGGDGRTPAGQSGD 414

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRG 447
           +  P +      K +   Q   A      G
Sbjct: 415 AKGPRRRRRNAPKREGQAQSAHAPQPQNGG 444


>gi|313667868|ref|YP_004048152.1| ATP-dependent RNA helicase [Neisseria lactamica ST-640]
 gi|313005330|emb|CBN86763.1| putative ATP-dependent RNA helicase [Neisseria lactamica 020-06]
          Length = 457

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 160/447 (35%), Positives = 253/447 (56%), Gaps = 29/447 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALALQGYETPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +      +
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNL---LE 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 242 RLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           +AI++L   K+             +E+I+  +     +    P+K+   + R++N     
Sbjct: 362 EAIKELTGNKL------------LIERIEGFEPRWWEQEGSKPEKTETSEPRQRNRY--- 406

Query: 418 SHIPLKESEKISKLQQDIQENDADSLG 444
                 ES K  + +    EN A+  G
Sbjct: 407 ------ESAKAQREKNTRPENAANDAG 427


>gi|261401858|ref|ZP_05987983.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
           lactamica ATCC 23970]
 gi|269207983|gb|EEZ74438.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
           lactamica ATCC 23970]
          Length = 457

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 160/447 (35%), Positives = 253/447 (56%), Gaps = 29/447 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALALQGYETPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +      +
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNL---LE 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 242 RLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           +AI++L   K+             +E+I+  +     +    P+K+   + R++N     
Sbjct: 362 EAIKELTGNKL------------LIERIEGFEPRWWEQEGSKPEKTETSEPRQRNRY--- 406

Query: 418 SHIPLKESEKISKLQQDIQENDADSLG 444
                 ES K  + +    EN A+  G
Sbjct: 407 ------ESAKAQREKNTRPENAANDAG 427


>gi|295660379|ref|XP_002790746.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb01]
 gi|226281299|gb|EEH36865.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb01]
          Length = 408

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 119/373 (31%), Positives = 199/373 (53%), Gaps = 5/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L 
Sbjct: 26  TFEDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++      +    L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 86  VIDTVLRETQA---LVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDH 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 143 GQHVVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 203 VVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDL--YD 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++++
Sbjct: 261 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIS 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 321 TDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIE 380

Query: 362 KLIEKKVDWLNGD 374
                ++D +  +
Sbjct: 381 LYYSTQIDEMPMN 393


>gi|312883052|ref|ZP_07742783.1| ATP-dependent RNA helicase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369212|gb|EFP96733.1| ATP-dependent RNA helicase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 443

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 128/437 (29%), Positives = 203/437 (46%), Gaps = 11/437 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    +   T IQ + IP+ +   D+   ++TG+GKT +FVLP+L
Sbjct: 1   MQFKDLGLDNRLLKNLKHFDFKNATKIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPIL 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR LIL PTRELA QV    +      +   +L++GG  F  Q K L
Sbjct: 61  HKSLKNKSFSAKDPRALILAPTRELAKQVYGELKSMLGGLSYDASLIVGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH     L ++ +E LV+DEADRMLD+GF P ++ I       R+
Sbjct: 121 RRYPKFIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHMAAKHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D                 +     +AE  +         +      L +  
Sbjct: 181 QTLMFSATLDHADVNDIALEMLDAPKRIAIDIGSAEHKDISQKFYLCDHLDHKESLLERA 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   K  IIF   + +   L   L   G    A+ G++ Q  R  I+S F+    +++
Sbjct: 241 IQEANYKQLIIFTATRVDTERLTEKLNSDGLKAIALSGSLTQTQRNTIMSQFERAVFKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDI +V HV NFD+P   E Y+HR+GRTGRAG  G A + V  +D      
Sbjct: 301 VTTDIASRGLDIANVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISFVGPKDWDSFKR 360

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +E  +++ +++     L G    L P  +       +  + +     K+    +R K++ 
Sbjct: 361 VETYLQQDINFSQFDGLEGKFKGLKPAKQDYRGKAKSTKKPSKNTKLKTKKAIKRDKSFH 420

Query: 415 SQKS-----HIPLKESE 426
              S      IP K+S+
Sbjct: 421 QNVSVGDNVFIPKKKSQ 437


>gi|209363862|ref|YP_001424084.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111]
 gi|212212853|ref|YP_002303789.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212]
 gi|212219099|ref|YP_002305886.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154]
 gi|215919015|ref|NP_819700.2| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
           493]
 gi|206583900|gb|AAO90214.2| ATP-dependent RNA helicase [Coxiella burnetii RSA 493]
 gi|207081795|gb|ABS77088.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111]
 gi|212011263|gb|ACJ18644.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212]
 gi|212013361|gb|ACJ20741.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154]
          Length = 420

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 166/412 (40%), Positives = 246/412 (59%), Gaps = 13/412 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS +++ A+ + GYV+PTP+Q + IP++LQ  DV   AQTGTGKTA F LP+L
Sbjct: 10  MSFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLL 69

Query: 61  TILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L   R  ++       R LIL PTRELA QV +    YGK   L   ++ GG+  + Q
Sbjct: 70  QRLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQ 129

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG D+L+ TPGR+LD  N+G L ++ +E  V+DEADRMLDMGF+P I+ I  L+P
Sbjct: 130 INHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLP 189

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +RQ LLFSAT + E++++++  L +P  IEV   ++ A  I H       Q  ++    
Sbjct: 190 ESRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDRQRKREL--- 246

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              +      +  ++F   K     L   LE  G S  AIHGN  Q +RM+ L+ FK+G 
Sbjct: 247 LSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGK 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+AARGLDI  + HV NF++P+ A++Y+HR+GRTGRA   G A +LV+ ++++
Sbjct: 307 IRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVR 366

Query: 356 HIDAIEKLIEKKV--DWLNGDLSS---LNPPLEKIDIAQHNHARKNNPIPQK 402
            +  IEKL++ K+  + + G   S      P++ +  A+ N   KNN    +
Sbjct: 367 LLRDIEKLLQSKMPQEVIPGYEPSPFTKAAPVQAVRRARSNQRGKNNGKRAR 418


>gi|153207356|ref|ZP_01946093.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161830442|ref|YP_001596593.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
           331]
 gi|165918485|ref|ZP_02218571.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
           334]
 gi|120576665|gb|EAX33289.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161762309|gb|ABX77951.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
           331]
 gi|165917853|gb|EDR36457.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
           334]
          Length = 411

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 166/412 (40%), Positives = 246/412 (59%), Gaps = 13/412 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS +++ A+ + GYV+PTP+Q + IP++LQ  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L   R  ++       R LIL PTRELA QV +    YGK   L   ++ GG+  + Q
Sbjct: 61  QRLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG D+L+ TPGR+LD  N+G L ++ +E  V+DEADRMLDMGF+P I+ I  L+P
Sbjct: 121 INHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +RQ LLFSAT + E++++++  L +P  IEV   ++ A  I H       Q  ++    
Sbjct: 181 ESRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDRQRKREL--- 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              +      +  ++F   K     L   LE  G S  AIHGN  Q +RM+ L+ FK+G 
Sbjct: 238 LSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGK 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+AARGLDI  + HV NF++P+ A++Y+HR+GRTGRA   G A +LV+ ++++
Sbjct: 298 IRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVR 357

Query: 356 HIDAIEKLIEKKV--DWLNGDLSS---LNPPLEKIDIAQHNHARKNNPIPQK 402
            +  IEKL++ K+  + + G   S      P++ +  A+ N   KNN    +
Sbjct: 358 LLRDIEKLLQSKMPQEVIPGYEPSPFTKAAPVQAVRRARSNQRGKNNGKRAR 409


>gi|326800907|ref|YP_004318726.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21]
 gi|326551671|gb|ADZ80056.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21]
          Length = 420

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 129/375 (34%), Positives = 207/375 (55%), Gaps = 8/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF++     +++  ++  G+  PTPIQ + IP++ ++HD+   AQTGTGKTAS++LP++
Sbjct: 1   MDFSEFNFDDRLLEGLMSMGFKIPTPIQQQAIPVIAEKHDLIACAQTGTGKTASYLLPLM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + K   R      LIL PTRELA Q+    +       +T   + GG       ++  
Sbjct: 61  DAICKNDDRPS-ISALILAPTRELALQIDQQIQGLAYFTGITSIAVYGGGDGVGYEQQRR 119

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
               G D++I TPGR++ H +   + +  I+ L++DEADRMLDMGF   I  I   +P  
Sbjct: 120 SLKEGVDIVIATPGRLIAHMSSSTVRLEKIDFLILDEADRMLDMGFKDDILRIVRQLPEQ 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM  +++     F +   +       + ++  E      Y  + ++   L +
Sbjct: 180 RQTLLFSATMPQKIRL----FAKALLKNPQQVNIAISQPAEKIKQQYYRTFDEQKVTLLK 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            + S D+  + IIFC+ K+NV  L   L K    V + H ++ Q  R +IL +FK   + 
Sbjct: 236 HILSTDSFYSIIIFCSTKENVKLLEKELFKNDLKVRSFHSDLQQDEREQILLDFKNRKLN 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+ +RG+DI  +  V N+DVP   E+YIHRIGRT RA R G A T V   D + +
Sbjct: 296 ILVGTDVLSRGIDIEGIDLVVNYDVPGDPEDYIHRIGRTARAERTGTAITFVNNRDFRKL 355

Query: 358 DAIEKLIEKKVDWLN 372
            +IEK++++ ++ + 
Sbjct: 356 LSIEKMMDRTIEEVQ 370


>gi|308050752|ref|YP_003914318.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307632942|gb|ADN77244.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 426

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 161/431 (37%), Positives = 237/431 (54%), Gaps = 13/431 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA  G  P++V A+   GY K TPIQ K IPL  + HD+   AQTGTGKTA+F LPML
Sbjct: 1   MSFASQGFCPEIVQALEQCGYQKMTPIQQKAIPLARKGHDILANAQTGTGKTAAFALPML 60

Query: 61  TILEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +     +   R  R LIL PTRELA QVADN  +Y +    T A+  GG+   +Q ++
Sbjct: 61  QSMVDKPQQRSRRHVRGLILAPTRELAQQVADNVAQYHQFLPFTSAVAYGGVKMASQARQ 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +      + +  +E LV+DEADRMLDMGFI  IQ I   +    
Sbjct: 121 LEAGVDILVATPGRLQELMEMNMVSLAQVEYLVLDEADRMLDMGFIGDIQRIRDQIKLPH 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT   ++++++   L+ PK + V   + TAET+ H     Y     +   L   
Sbjct: 181 QTMLFSATYPPKMKQLAAELLKKPKMVSVGEENRTAETVAH---VFYPVDEDRKIELLSE 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +   +  ++F N K++   +   L   G +    HG+  Q +R + L  FKEG +++
Sbjct: 238 LIGRKNWQQVLVFVNYKEHADAIAEELNNDGLTTGVCHGDRSQGNRRRALKEFKEGKLRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV N+D+P  AE+Y+HRIGRTGRAG  G A +LV +ED     
Sbjct: 298 LVATDVAARGLDIQGLPHVVNYDLPFLAEDYVHRIGRTGRAGLQGHAVSLVGREDELTAV 357

Query: 359 AIEKLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            IE+LI +++  +        +  +L          +    R N    Q  +G +R+ + 
Sbjct: 358 QIERLIGQRIRRVEQPGYEARNRDALVDKFNSKAAFRDRKGRTNRASDQ--SGAERQLRL 415

Query: 413 YSSQKSHIPLK 423
             + K+ +  +
Sbjct: 416 RQAVKARLKQR 426


>gi|162148995|ref|YP_001603456.1| cold-shock DEAD box protein A [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209545253|ref|YP_002277482.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787572|emb|CAP57168.1| putative cold-shock DEAD box protein A [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532930|gb|ACI52867.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 423

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 152/391 (38%), Positives = 228/391 (58%), Gaps = 13/391 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L+  ++ A+ + GY  PTPIQ   IP +L   D+ G+AQTGTGKTA+F LP+L 
Sbjct: 3   TFADLQLAEPLLRALNEEGYTTPTPIQAGAIPHLLAGRDLLGLAQTGTGKTAAFALPILQ 62

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L     R         +L PTRELA+Q+ ++F+ Y ++  L+  ++ GG+    Q + +
Sbjct: 63  RLLTHHRRANPKGARVLVLAPTRELASQIDESFKSYARHMRLSHTVIFGGVGQGRQVEAM 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DVL+  PGR+LD   +G + ++ +E+LV+DEADRMLDMGF+  I+ I + +P  RQ
Sbjct: 123 RRGVDVLVAAPGRLLDLMGQGHIDLSGLEVLVLDEADRMLDMGFVRDIRRIVAELPRDRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   +  ++   L++P  ++V  PSST + I    +       +      QLL
Sbjct: 183 TLLFSATMPKSIADLAHGLLRDPATVQVTPPSSTVDRIRQAVMFVDTDNKRAA---LQLL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                ++  ++F   K     +   L   G    AIHGN  Q +R + ++ F+ G ++++
Sbjct: 240 VDSPKVERAVVFTLMKHEANKVAAFLNDHGIIAEAIHGNKSQGARERAMAGFRSGAVKVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV HVFN+D+PN  E+Y+HRIGRT RAGR G A +L   E    +  
Sbjct: 300 VATDIAARGIDVDDVTHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSLCDAEQRAWLRD 359

Query: 360 IEKLIEKKVDWLN--------GDLSSLNPPL 382
           IEK I KK+  +          + S+L PP+
Sbjct: 360 IEKAIGKKIPVVQEHPYHSEAAENSTLRPPV 390


>gi|323497187|ref|ZP_08102207.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
 gi|323317762|gb|EGA70753.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
          Length = 419

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 154/424 (36%), Positives = 235/424 (55%), Gaps = 14/424 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LGLS  ++  +   G+  PT +Q ++IP +L   DV   AQTGTGKTA+F LP++ 
Sbjct: 4   EFESLGLSQPLLTTLNTLGFTTPTQVQQQSIPHILLGKDVLAGAQTGTGKTAAFGLPIIQ 63

Query: 62  ILEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L +       +    R L+L PTRELA QV DN  +Y ++  L +    GG     Q +
Sbjct: 64  QLIQSESVRDPQGNDVRALVLVPTRELAQQVYDNLVQYAESTPLKIVTAYGGTSINVQTR 123

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +G D+LI TPGR++DH     + +   E LV+DEADRMLDMGF+P IQ I       
Sbjct: 124 NLHQGCDILIVTPGRLIDHMFCKNVSLAKTEYLVLDEADRMLDMGFMPDIQRILKRFNPE 183

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL FSAT    ++ ++    ++P  I+V+  +STAET+       Y    K+ A L  
Sbjct: 184 RQTLFFSATFDKRIKNIAYKLQKDPIEIQVSPSNSTAETV---KQMVYPVDKKRKAELLA 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L      +  ++F   K+    L   L+  G    +I+G+  Q +R K L +FK G ++
Sbjct: 241 YLIGSRNWQQVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGKVR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++A+D+AARGLDI  +  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++   +
Sbjct: 301 ALIATDVAARGLDINQLEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAVSLMSQDEHYLL 360

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           +AIE+L++ ++  +WL G   SL       D+      RK +   +K     + K + + 
Sbjct: 361 EAIERLLDTRLPQEWLQGFEPSLVE-----DVTPERTPRKKSRSSEKRKMKAKLKIHANR 415

Query: 416 QKSH 419
            K  
Sbjct: 416 GKKR 419


>gi|292487709|ref|YP_003530582.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora
           CFBP1430]
 gi|292898944|ref|YP_003538313.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291198792|emb|CBJ45901.1| putative ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291553129|emb|CBA20174.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora
           CFBP1430]
 gi|312171822|emb|CBX80079.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora ATCC
           BAA-2158]
          Length = 470

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 158/390 (40%), Positives = 239/390 (61%), Gaps = 6/390 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                        R  R LIL PTRELAAQV +N + Y K  ++   ++ GG+    Q  
Sbjct: 61  QLLSSHNPHPKGRRPVRALILTPTRELAAQVGENVQDYSKYLDMRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  L ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++E  L NP+++EV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTASEQV---TQHVHLVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + LS+FK+G I+
Sbjct: 238 LLIGRGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKDGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGIDIEELPHVVNYELPNVPEDYVHRIGRTGRAAAVGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
             IE+++++++  +  D    +P ++   I
Sbjct: 358 RDIERVLKREIPRMAIDGFEPDPAIKAEPI 387


>gi|226315226|ref|YP_002775122.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226098176|dbj|BAH46618.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 513

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 146/369 (39%), Positives = 221/369 (59%), Gaps = 6/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL   +V A+ + G+ + T IQ +T+P+ LQ  D+ G AQTGTGKTA+F +P++ 
Sbjct: 3   TFNDFGLHHSIVRALSNMGFEEATAIQDQTVPVALQGRDLIGQAQTGTGKTAAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++    ++     +L PTRELA QVA+   K  +  N++   + GG     Q K L++
Sbjct: 63  RMDETSGNIQGV---VLTPTRELAVQVAEEINKIAQFKNISALPIYGGQDITRQIKALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR +DH  R  + ++ IE++V+DEAD ML+MGFI  I+ I   VP +RQTL
Sbjct: 120 RPQIIVATPGRFMDHMRRRTIRLDAIEVVVLDEADEMLNMGFIDDIKEILKEVPESRQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +Q++++ F+  P  I+V     T   I            K+   +   L  
Sbjct: 180 LFSATMPRAIQEIAQQFMNEPTIIQVKAKEVTVPNIAQ---EYMEVAEKQKFDVLCRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  IIF   K+ V  L  +L K+G+    IHG+++Q  R  +L  FKEGTI+++VA
Sbjct: 237 IHSPELAIIFGRTKRRVDELSEALTKRGYGAEGIHGDLNQAKRDSVLRKFKEGTIEVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HVFNFD+P  +E+Y+HRIGRTGRAG+ G A T V   +I H+  IE
Sbjct: 297 TDVAARGLDISGVTHVFNFDIPQDSESYVHRIGRTGRAGKTGLAITFVTSREIDHLRLIE 356

Query: 362 KLIEKKVDW 370
           +   ++++ 
Sbjct: 357 RTTNRRMER 365


>gi|254508548|ref|ZP_05120665.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus 16]
 gi|219548490|gb|EED25498.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus 16]
          Length = 433

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 137/413 (33%), Positives = 210/413 (50%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL P++   +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADLGLHPQITEGLEKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 E    +   PR +I+ PTRELA Q+ ++ E    +  +  AL  GG  ++ Q  
Sbjct: 70  HLLTTSEHEGRKPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KLE G DVLI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLEDGVDVLIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           ++ L    + T   +     F       E        +T        +   ++    L Q
Sbjct: 190 KERLNMLFSATLSYRVQELAFEHMHN-PEHVVVEPEVKTGHRIQEELFYPSNEHKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++  +  IIF N K    ++   L   G  V  + G++ Q+ R +IL  F +G + 
Sbjct: 249 TLIEEEWPERAIIFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKRERILEQFTKGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   ++   ++
Sbjct: 309 LLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAINL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
             IE+ IE  +   + D S+L       D+      R N P  +++     R 
Sbjct: 369 PPIEEYIEHTIPVSDYDPSALIE-----DLPAPIRMRSNRPQQRRTNTGGSRS 416


>gi|124026185|ref|YP_001015301.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           NATL1A]
 gi|123961253|gb|ABM76036.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           NATL1A]
          Length = 589

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 144/417 (34%), Positives = 229/417 (54%), Gaps = 9/417 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++   S +++  + D GY  PTPIQ   IP +L   D+ G AQTGTGKTA+F LP+L  
Sbjct: 38  FSEFNFSEELIQTISDKGYSSPTPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPILER 97

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKLER 121
           L+K    V  P+ L+L PTRELA QVA++F  Y   +     L I G   F  Q   L R
Sbjct: 98  LKKN---VGHPQVLVLAPTRELAMQVAESFRTYSAGHPHFKVLAIYGGSDFRNQINTLRR 154

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR++DH  +  L  +++  LV+DEAD ML MGFI  ++ I   +P  RQ +
Sbjct: 155 GVDVVVGTPGRVMDHMRQKTLNTSHLSCLVLDEADEMLRMGFIDDVEWILEQLPEERQLV 214

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++S+ +L +P  I +         I   +++    Y        Q +  
Sbjct: 215 LFSATMPSEIRRLSKKYLNSPAEITIKATELKERLIRQRYISVQNVYK---VNALQRVLE 271

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  IIF   K   + +   LE  G++V  ++G+I Q  R + +   ++G+I ++VA
Sbjct: 272 AVSEEGVIIFARTKAITIVVAEKLESYGYNVAVLNGDIPQNQRERTVERLRQGSINILVA 331

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N+D+P   E Y+HRIGRTGRAGR+G+A   V   +   +  +E
Sbjct: 332 TDVAARGLDVDRIGLVINYDMPFDREAYVHRIGRTGRAGRNGEAILFVNPRERSFLSNLE 391

Query: 362 KLIEKKVDWLNGDLSSL--NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           + + + ++ ++   + L  N  ++K+       A      P+++   +   KN   +
Sbjct: 392 RAVGQPIEKMDIPDNDLINNNRIKKLQAKLIKAASTERDNPEEANILEELIKNVEKE 448


>gi|72382486|ref|YP_291841.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Prochlorococcus marinus str. NATL2A]
 gi|72002336|gb|AAZ58138.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str.
           NATL2A]
          Length = 589

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 144/417 (34%), Positives = 229/417 (54%), Gaps = 9/417 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++   S +++  + D GY  PTPIQ   IP +L   D+ G AQTGTGKTA+F LP+L  
Sbjct: 38  FSEFNFSEELIQTISDKGYSSPTPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPILER 97

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKLER 121
           L+K    V  P+ L+L PTRELA QVA++F  Y   +     L I G   F  Q   L R
Sbjct: 98  LKKN---VGHPQVLVLAPTRELAMQVAESFRTYSAGHPHFKVLAIYGGSDFRNQINTLRR 154

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR++DH  +  L  +++  LV+DEAD ML MGFI  ++ I   +P  RQ +
Sbjct: 155 GVDVVVGTPGRVMDHMRQKTLNTSHLSCLVLDEADEMLRMGFIDDVEWILEQLPEERQLV 214

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++S+ +L +P  I +         I   +++    Y        Q +  
Sbjct: 215 LFSATMPSEIRRLSKKYLNSPAEITIKATELKERLIRQRYISVQNVYK---VNALQRVLE 271

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  IIF   K   + +   LE  G++V  ++G+I Q  R + +   ++G+I ++VA
Sbjct: 272 AVSEEGVIIFARTKAITIVVAEKLESYGYNVAVLNGDIPQNQRERTVERLRQGSINILVA 331

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N+D+P   E Y+HRIGRTGRAGR+G+A   V   +   +  +E
Sbjct: 332 TDVAARGLDVDRIGLVINYDMPFDREAYVHRIGRTGRAGRNGEAILFVNPRERSFLSNLE 391

Query: 362 KLIEKKVDWLNGDLSSL--NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           + + + ++ ++   + L  N  ++K+       A      P+++   +   KN   +
Sbjct: 392 RAVGQPIEKMDIPDNDLINNNRIKKLQAKLIKAASTERDNPEEANILEELIKNVEKE 448


>gi|28899776|ref|NP_799381.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153839108|ref|ZP_01991775.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AQ3810]
 gi|260362509|ref|ZP_05775435.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus K5030]
 gi|260877189|ref|ZP_05889544.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AN-5034]
 gi|260897233|ref|ZP_05905729.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus Peru-466]
 gi|260901365|ref|ZP_05909760.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AQ4037]
 gi|32363280|sp|Q87KH5|RHLB_VIBPA RecName: Full=ATP-dependent RNA helicase rhlB
 gi|28808028|dbj|BAC61265.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149747404|gb|EDM58368.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AQ3810]
 gi|308088928|gb|EFO38623.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus Peru-466]
 gi|308094139|gb|EFO43834.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AN-5034]
 gi|308107202|gb|EFO44742.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AQ4037]
 gi|308112656|gb|EFO50196.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus K5030]
 gi|328471326|gb|EGF42225.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus 10329]
          Length = 437

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 139/429 (32%), Positives = 213/429 (49%), Gaps = 6/429 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL P+V   +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADLGLQPQVTEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 E    +   PR +I+ PTRELA Q+ ++ E    +  L  AL  GG  ++ Q  
Sbjct: 70  HLLTTPEHEGRQPTQPRAIIMAPTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G D+LI T GRI+D + +    +NNI+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           ++ L    + T   +     F       E        +T        +   ++    L Q
Sbjct: 190 KERLNMLFSATLSYRVQELAFEHMHN-PEHVVVEPAQKTGHRIQEELFYPSNEDKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     I+F N K    ++   L   G  V  + G++ Q+ R KIL  F +G + 
Sbjct: 249 TLIEEEWPDRAIVFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPL-EKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            AIE+ IE  +     D S+L   L   I +      ++        +G  + +     Q
Sbjct: 369 PAIEEYIEHTIPVSEYDASALIQDLPAPIRMRAPRVQQRRTNTGGTRSGNRKPQGRRPRQ 428

Query: 417 KSHIPLKES 425
                 K+S
Sbjct: 429 PRQSAPKQS 437


>gi|332525968|ref|ZP_08402109.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332109519|gb|EGJ10442.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 500

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 159/374 (42%), Positives = 233/374 (62%), Gaps = 8/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+DLGL+  ++ AV + GY  PTPIQ + IP VLQ  D+   AQTGTGKTA F LPML
Sbjct: 1   MNFSDLGLAEPLLRAVREQGYDVPTPIQAQAIPAVLQGGDLLAGAQTGTGKTAGFTLPML 60

Query: 61  TI-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                    +        R L+L PTRELAAQV ++   YGK   LT  ++ GG+  + Q
Sbjct: 61  QRLSASKPVRDSRGRIAVRALVLTPTRELAAQVEESVRAYGKYLPLTSMVMFGGVGMQPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L +G D+L+ TPGR+LDH  +G L ++ ++ILV+DEADRMLDMGFI  I+ + +++P
Sbjct: 121 IDRLRKGVDILVATPGRLLDHHGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLAVLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE++ +++  L  P  IEV   ++TA+TI         +  K+    
Sbjct: 181 QKKQSLLFSATFSDEIKALADRLLNQPALIEVARRNATADTIAQKVHPVGREKKKEL--- 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L  Q      ++F   K     L   L +QG +  AIHGN  Q +R K L+ FK GT
Sbjct: 238 LAHLIRQGDWHQVLVFTRMKHGANRLAEYLNEQGITAMAIHGNKSQGARTKALAEFKAGT 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARG+DI  + HV N+++PN  E+Y+HRIGRTGRAG  G+A +LV  ++  
Sbjct: 298 LQVLVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGASGEAVSLVCLDEEI 357

Query: 356 HIDAIEKLIEKKVD 369
            +  I++LI++++ 
Sbjct: 358 FLRDIQRLIKREIP 371


>gi|331268314|ref|YP_004394806.1| ATP-dependent RNA helicase [Clostridium botulinum BKT015925]
 gi|329124864|gb|AEB74809.1| ATP-dependent RNA helicase [Clostridium botulinum BKT015925]
          Length = 528

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 144/371 (38%), Positives = 213/371 (57%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL +S ++  A+ D G+  P+PIQ K IP +L   D+ G AQTGTGKTA+F +P L
Sbjct: 4   IKFEDLPISDEIKRAIADMGFEAPSPIQEKAIPFILSGKDIIGQAQTGTGKTAAFGIPAL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++     ++    ++L PTRELA Q      K GK       L +  G P + Q K L
Sbjct: 64  DTIDLNNKSLQ---IMVLCPTRELAIQATQEVHKLGKYKKDISVLAVYGGQPIDRQIKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  ++I TPGR++DH  R  L  +NI+++V+DEAD MLDMGF   I+ I   +P  RQ
Sbjct: 121 KRGVQIIIGTPGRVIDHIRRKTLKTDNIKMIVLDEADEMLDMGFRDDIETIIQEIPQNRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + ++S+ +  N + I          T+ +               +   L
Sbjct: 181 TILFSATMAKAIIELSKKYQNNAEFI---KVVHKQLTVPNIEQRYLEVKENNKLEVLSRL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  +IFCN KK V  +   L+ +G+    +HG++ Q  R ++++ F+ GTI+++
Sbjct: 238 IDMRNPKLSVIFCNTKKRVDEVVSQLQARGYFAEGLHGDMKQPQRDRVMNKFRNGTIEIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G AFT VA + I+ +  
Sbjct: 298 VATDVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRSGIAFTFVAGKAIRKLRD 357

Query: 360 IEKLIEKKVDW 370
           IE+  + KV  
Sbjct: 358 IERYTKTKVKR 368


>gi|296119482|ref|ZP_06838040.1| putative cold shock DEAD-box protein A [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967365|gb|EFG80632.1| putative cold shock DEAD-box protein A [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 658

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 142/371 (38%), Positives = 222/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL  KV  AV   GY  P+PIQ +TIP++++  DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 62  FGNLGLPDKVQDAVAKVGYTTPSPIQAQTIPILMEGRDVVGLAQTGTGKTAAFALPVLSQ 121

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLER 121
           ++      R P+ L+L PTRELA QVAD+F+ +  +      L I G   +  Q   L R
Sbjct: 122 IDVN---ARHPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRR 178

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  +G L ++ +  LV+DEAD ML+MGF   ++ I +  P  +Q  
Sbjct: 179 GAQIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILADTPEEKQVA 238

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++S+ +L +P  + V +   T + I+  F+ T  +           +  
Sbjct: 239 LFSATMPNSIRRLSKKYLNSPAEVTVKSEQRTNDNIKQRFLLTAHRAKLDAFTRILEVTD 298

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   I+FC  K     +   L   G++  AI+G+I Q  R + +   K+G + ++VA
Sbjct: 299 YDAM---IVFCRTKHETEEVAEKLRDAGYNAAAINGDIAQNQRERTVDQLKDGRLDILVA 355

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV NFD+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 356 TDVAARGLDVDRITHVVNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 415

Query: 362 KLIEKKVDWLN 372
           ++   +++ + 
Sbjct: 416 RVTNARLEEME 426


>gi|255654809|ref|ZP_05400218.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-23m63]
 gi|296449553|ref|ZP_06891330.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
 gi|296878124|ref|ZP_06902139.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
 gi|296261617|gb|EFH08435.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
 gi|296430877|gb|EFH16709.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
          Length = 537

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 141/384 (36%), Positives = 224/384 (58%), Gaps = 9/384 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL +S  +  A+ + G+ +P+PIQ ++IP +L   DV G AQTGTGKTA+F +P+L 
Sbjct: 5   KFEDLPISEGIKKAIAEMGFEEPSPIQAQSIPAILSGKDVIGQAQTGTGKTAAFSIPILE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     ++     +L PTRELA QV+    K  K  +    L I  G P + Q K L+
Sbjct: 65  TIDPNNRSLQAV---VLCPTRELAIQVSTEIRKLAKYSHGIKTLPIYGGQPIDRQIKSLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  V+I TPGR +DH NR  L M+N++++++DEAD MLDMGF   I+ I S +P  RQT
Sbjct: 122 SGVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMILSKIPEERQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM   + ++++ + ++P+ I+V     T    +  ++ T +    +         
Sbjct: 182 TFFSATMPRGILELTKRYQKDPEHIKVVRKELTVSNTKQYYIETRSSNKLEVLCRL---V 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  ++FCN K+    L   L+ +G+   A+HG++ Q  R  ++  F+ GTI ++V
Sbjct: 239 DVYDPKLSVVFCNTKRKADELVGDLQARGYFADALHGDLKQTQRDIVMDKFRNGTIDILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G +FT V  ++++ +  I
Sbjct: 299 ATDVAARGIDVDDVECVFNYDLPQDEEYYVHRIGRTGRAGREGMSFTFVFGKEMRKMKDI 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E+  + K+  +  ++ ++    EK
Sbjct: 359 ERYTKSKL--IKHNIPTITDVEEK 380


>gi|163800381|ref|ZP_02194282.1| hypothetical protein 1103602000595_AND4_06859 [Vibrio sp. AND4]
 gi|159175824|gb|EDP60618.1| hypothetical protein AND4_06859 [Vibrio sp. AND4]
          Length = 619

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 146/403 (36%), Positives = 221/403 (54%), Gaps = 7/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL L+  ++ A+   G+V PTPIQ   IP +L+  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFRDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             L+  + +   P+ ++L PTRELA QVA   +  GKN      L I G      Q + L
Sbjct: 66  NKLDLDQRK---PQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA V++ TPGR+ D  NR +L ++ ++  V+DEAD ML+MGF+  +  I    P + Q
Sbjct: 123 KNGAHVIVGTPGRVQDLINRERLHLDEVKTFVLDEADEMLNMGFVDDVTAIMEHSPDSAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   L+ + E FL++P  ++V   + T + ++  F         +        
Sbjct: 183 RVLFSATMPPMLKSICERFLRSPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLET 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D     I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 243 EETD---ASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKKGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRINHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           IE++ +  ++ +   L           +A    A K +    K
Sbjct: 360 IERVTKSSMEEIQLPLRDQVAEARLNKLAAELEAEKEHKALDK 402


>gi|126698341|ref|YP_001087238.1| putative ATP-dependent RNA helicase [Clostridium difficile 630]
 gi|254974380|ref|ZP_05270852.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-66c26]
 gi|255091773|ref|ZP_05321251.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP
           107932]
 gi|255099876|ref|ZP_05328853.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-63q42]
 gi|255305765|ref|ZP_05349937.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC
           43255]
 gi|255313504|ref|ZP_05355087.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-76w55]
 gi|255516192|ref|ZP_05383868.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-97b34]
 gi|255649288|ref|ZP_05396190.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-37x79]
 gi|260682458|ref|YP_003213743.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260686057|ref|YP_003217190.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
 gi|306519386|ref|ZP_07405733.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-32g58]
 gi|115249778|emb|CAJ67595.1| putative ATP-dependent RNA helicase [Clostridium difficile]
 gi|260208621|emb|CBA61352.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260212073|emb|CBE02663.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
          Length = 537

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 141/384 (36%), Positives = 224/384 (58%), Gaps = 9/384 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL +S  +  A+ + G+ +P+PIQ ++IP +L   DV G AQTGTGKTA+F +P+L 
Sbjct: 5   KFEDLPISEGIKKAIAEMGFEEPSPIQAQSIPAILSGKDVIGQAQTGTGKTAAFSIPILE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     ++     +L PTRELA QV+    K  K  +    L I  G P + Q K L+
Sbjct: 65  TIDPNNRSLQAV---VLCPTRELAIQVSTEIRKLAKYSHGIKTLPIYGGQPIDRQIKSLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  V+I TPGR +DH NR  L M+N++++++DEAD MLDMGF   I+ I S +P  RQT
Sbjct: 122 SGVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMILSKIPEERQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM   + ++++ + ++P+ I+V     T    +  ++ T +    +         
Sbjct: 182 TFFSATMPRGILELTKRYQKDPEHIKVVRKELTVSNTKQYYIETRSSNKLEVLCRL---V 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  ++FCN K+    L   L+ +G+   A+HG++ Q  R  ++  F+ GTI ++V
Sbjct: 239 DVYDPKLSVVFCNTKRKADELVGDLQARGYFADALHGDLKQTQRDIVMDKFRNGTIDILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G +FT V  ++++ +  I
Sbjct: 299 ATDVAARGIDVDDVECVFNYDLPQDEEYYVHRIGRTGRAGREGMSFTFVFGKEMRKMKDI 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E+  + K+  +  ++ ++    EK
Sbjct: 359 ERYTKSKL--IKHNIPTITDVEEK 380


>gi|317026711|ref|XP_001399394.2| ATP-dependent RNA helicase dbp2 [Aspergillus niger CBS 513.88]
          Length = 564

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 128/380 (33%), Positives = 208/380 (54%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ +PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 138 TFDEAGFPQYVLSEVKAQGFDRPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 197

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 198 HINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDL 257

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 258 SRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQ 317

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T ++SAT   E+++++ +FL +  ++ + +   +A       V   + + K+  +++ L 
Sbjct: 318 TCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLE 377

Query: 240 QSQDTMKNGIIFCNQKKN-VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   N  +     K     +   L + G+   +IHG+  Q+ R  +L+ FK G   +
Sbjct: 378 KIMENRANKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPI 437

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A T    ++ K   
Sbjct: 438 MVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQAR 497

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    ++  L+ +
Sbjct: 498 DLVTILTEAKQQIDPRLAEM 517


>gi|167757993|ref|ZP_02430120.1| hypothetical protein CLOSCI_00330 [Clostridium scindens ATCC 35704]
 gi|167664425|gb|EDS08555.1| hypothetical protein CLOSCI_00330 [Clostridium scindens ATCC 35704]
          Length = 526

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 138/367 (37%), Positives = 215/367 (58%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL P+++ AV + G+ + +PIQ K IP +L+  D+ G AQTGTGKTA+F +P+L  
Sbjct: 6   FEDLGLCPEIMKAVKNMGFEEASPIQAKAIPAMLEGKDIIGQAQTGTGKTAAFGIPLLEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    +++     +L PTRELA QVA+      K  +    L I  G     Q + L+ 
Sbjct: 66  IDPKNKKLQAI---VLCPTRELAIQVAEEIRNLAKYMHAIKVLPIYGGQEIVKQIRSLKS 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR++DH  R  + M N+  +V+DEAD ML+MGF   I+ I   VP  RQT+
Sbjct: 123 GTQLIIGTPGRVMDHMRRKTVKMENVHTVVLDEADEMLNMGFREDIETILEGVPEERQTV 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +  +++ F +N + I+V     T   IE  +        K    +   L  
Sbjct: 183 LFSATMPKPILDITKRFQKNAELIKVTKKELTVPNIEQFYYEVKP---KNKEEVLSRLLD 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  +IFCN KK V  L + L  +G+    +HG++ Q  R +++  F++G  +++VA
Sbjct: 240 IYNPKLSVIFCNTKKQVDLLVNGLLGRGYFAAGLHGDMKQAQRDRVMDGFRKGKTEILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ +V  VFN+D+P   E Y+HRIGRTGRAGR G++F+ V  +++  +  I+
Sbjct: 300 TDVAARGIDVEEVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVTGKEVYKLKEIQ 359

Query: 362 KLIEKKV 368
           +  + K+
Sbjct: 360 RYCKTKI 366


>gi|88860256|ref|ZP_01134894.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2]
 gi|88817454|gb|EAR27271.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2]
          Length = 408

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 132/376 (35%), Positives = 203/376 (53%), Gaps = 4/376 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M FADL L  K++ A+  AGY  PT IQ   IP  +   D+   A TGTGKTA+F+LP +
Sbjct: 1   MQFADLDLDKKILNAIDKAGYKTPTSIQQLAIPEAMAGRDILASAPTGTGKTAAFLLPSI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R      R LI+ PTRELA Q+ +    +  N +L + ++ GGI + +     
Sbjct: 61  QYLLDFPRRDPGFARVLIMTPTRELAYQIHEQCVLFAANTHLKIGVVTGGINYGSHKDIF 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+  D+LI TPGR++D+    +    N+EIL++DEADRMLDMGF   +  I       RQ
Sbjct: 121 EKNNDILIATPGRLMDYMKTEEFHAENVEILILDEADRMLDMGFRSEMMKICDEATNRRQ 180

Query: 180 TLLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             LFSAT   D +++ ++  L +P  +E  +       I        ++  K    L + 
Sbjct: 181 CFLFSATLEGDSVERFADTILNDPALLEAESSRKEQGKILQWVHLADSRNHKLD--LLEA 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   + M   I+F   ++ +  L   L  +      + G + Q  RM  ++NF+ G   +
Sbjct: 239 ILKAEDMSKAIVFVKTREKLEELVGLLVARDIKTAWLRGEMPQDKRMAAMANFQSGRANI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+ HV N+D+P  A+ Y+HRIGRTGRAG+ G A +LV   D+  + 
Sbjct: 299 LVATDVAARGIDVTDISHVINYDMPRTADIYVHRIGRTGRAGKKGVAISLVEAHDVGILK 358

Query: 359 AIEKLIEKKVDWLNGD 374
            IE+  E+ +   N  
Sbjct: 359 KIERYTEQNLKRRNIK 374


>gi|254561714|ref|YP_003068809.1| RNA helicase [Methylobacterium extorquens DM4]
 gi|254268992|emb|CAX24953.1| RNA helicase [Methylobacterium extorquens DM4]
          Length = 510

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 146/396 (36%), Positives = 231/396 (58%), Gaps = 8/396 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL+  V+ A+ +AGYV PTPIQ + +P  ++  D+CGIAQTGTGKTA+F LP+L 
Sbjct: 3   QFTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILH 62

Query: 62  ILEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L     R       +L   PTRELA+Q+AD+F  YG++   T  ++ GG+    Q + +
Sbjct: 63  RLSLDSRRAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQERAI 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR++D  +R  L +  +EILV+DEAD+MLD+GFI  ++ I  ++P  RQ
Sbjct: 123 APGVDILVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAKRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +L FSATM   +  +++ +L NP ++ V   ++TAE ++   +  +    +        +
Sbjct: 183 SLFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCHTGAKQAL---LNHV 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                ++  ++F   K     +   L+K      AIHGN  Q  R + L+ F++G+ +++
Sbjct: 240 LRDPKIERVLVFTRTKHGADRVVRGLDKANVVSAAIHGNKSQPQRERALAAFRDGSCRVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV N+D+PN  E+Y+HRIGRT RAG  G+A +    E+  ++  
Sbjct: 300 VATDIAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRD 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           IE+   +K+  + G      PP  +   AQ N A +
Sbjct: 360 IERTTRQKIP-VGGFPEGFVPPSRQ--EAQDNAAEE 392


>gi|169829133|ref|YP_001699291.1| ATP-dependent RNA helicase yqfR [Lysinibacillus sphaericus C3-41]
 gi|168993621|gb|ACA41161.1| Probable ATP-dependent RNA helicase yqfR [Lysinibacillus sphaericus
           C3-41]
          Length = 434

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 133/437 (30%), Positives = 214/437 (48%), Gaps = 10/437 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M  + D    P +  A+ + G+ +PTPIQ + IPL+L+     G A TGTGKT SF++P+
Sbjct: 2   MSKYTDYNFQPFLQDAIAELGFTEPTPIQKEIIPLILKGKSAIGQAHTGTGKTHSFLIPI 61

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  ++  +  V+     I  PTRELA Q+ D   +  +   +   L IGG   +    KL
Sbjct: 62  VQRIDVEKQEVQAV---ITSPTRELAQQIYDALNQLIEGTAIQAKLFIGGTDKQRSIDKL 118

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +++ TPGRI D  +   L ++   ILV+DEAD   DMGFI  I    S +P   +
Sbjct: 119 KTQPQIVVGTPGRIRDLVSAQALFVHTAPILVVDEADLAFDMGFIEEIDGFASQMPEKLE 178

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +FSAT+ ++LQ   + ++  P  + +N     AE I           SK        +
Sbjct: 179 MFVFSATIPEKLQPFLKKYMDAPVHVHMNDKRPVAEGI---DFMLVPVRSKSRNKRLLEV 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    +IF N +K+  ++   L + G     IHG++  R R K++   ++   Q +
Sbjct: 236 IEGINPFLAVIFTNTRKSAEHVAGYLNEHGIRCGQIHGDLSPRDRKKMMKQIRDLEYQYI 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+DI  + HV N+++P   E +IHR+GRT RAG  G A TL    +   +  
Sbjct: 296 VATDLAARGIDIQGISHVINYEIPEDLEFFIHRVGRTARAGNKGTAITLFEPSEEDAVVR 355

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +EK+    + ++  D+ +      K   A+ N  ++ N I  K+    R+ K        
Sbjct: 356 VEKM---GIPFVQMDVKNGEWSELKERHARKNRVKQENEIDVKAKALVRKPKKVKPGYKR 412

Query: 420 IPLKESEKISKLQQDIQ 436
               E EKI K ++ ++
Sbjct: 413 NMKWEMEKIKKRERRLK 429


>gi|84394092|ref|ZP_00992827.1| Superfamily II DNA and RNA helicase [Vibrio splendidus 12B01]
 gi|86146725|ref|ZP_01065046.1| Superfamily II DNA and RNA helicase [Vibrio sp. MED222]
 gi|84375283|gb|EAP92195.1| Superfamily II DNA and RNA helicase [Vibrio splendidus 12B01]
 gi|85835572|gb|EAQ53709.1| Superfamily II DNA and RNA helicase [Vibrio sp. MED222]
          Length = 428

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 156/419 (37%), Positives = 236/419 (56%), Gaps = 13/419 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P++V A+ + GY K TPIQ K IP+  + HD+   AQTGTGKTA+F LP++
Sbjct: 1   MSFSSQGFAPELVKALTECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPVI 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +         IL PTRELAAQ+A N + Y K   L+V+ + GG    +Q ++
Sbjct: 61  QHLLNSGKKASRGTARGLILAPTRELAAQIAQNIKDYVKYTELSVSAVYGGNKMSSQVRQ 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H   G + + N+E LV DEADR+LDMGFI  ++ I   V  + 
Sbjct: 121 LELGVDILVATPGRLEEHLEAGNVSIANLEFLVFDEADRILDMGFINAVRKIMLDVETSP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L ++S + L+ PKRI V   +STA T+ H       +   +       
Sbjct: 181 QIMMFSATTSTQLNQLSVDILRKPKRISVERENSTASTVGHVVYPVDQERKTELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F N K+   ++   L+  G      HG+  Q +R + L +FKEG  ++
Sbjct: 239 -IGRKNWRQVLVFVNYKETANDVVKELKLDGIKAVLCHGDKAQSARRRALDDFKEGRARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V +E+   + 
Sbjct: 298 MVATDVAARGLDIEDLPHVINYDMPFLAEDYVHRIGRTGRAGKQGHAISFVNREEELTVV 357

Query: 359 AIEKLIEKKVDWL------NGDLSSLNPPLEKIDIAQHNHARKN--NPIPQKSTGFDRR 409
            +E LI++++  +           +    L      ++   RKN  N  PQ     +RR
Sbjct: 358 QVETLIQQRIRRVEQPGYEPKKRDAYIEKLNTKSAYKNRQGRKNNANEEPQDQASAERR 416


>gi|315635445|ref|ZP_07890711.1| ATP-dependent RNA helicase DeaD [Arcobacter butzleri JV22]
 gi|315480203|gb|EFU70870.1| ATP-dependent RNA helicase DeaD [Arcobacter butzleri JV22]
          Length = 516

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 131/369 (35%), Positives = 206/369 (55%), Gaps = 9/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ +AG+ +P+PIQ + IP +L   D+ G A TGTGKTA+F LP+L
Sbjct: 1   MTFNDFNFKELLQKAIDEAGFKEPSPIQEQAIPYILDGRDIVGQAHTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++           +++ PTRELA QV+D   ++GK   +  A + GG  +  Q K +E
Sbjct: 61  NKIKA----KSGVEAVVIVPTRELAMQVSDELYRFGKFLGINTATVYGGQAYARQIKLIE 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             + ++      +     RG  +    + +++DEAD MLDMGF+  I+ I + +P  RQT
Sbjct: 117 NSSVIVATPGRFLDLL--RGDKISIKPKFVILDEADEMLDMGFLDDIKEIFTFLPENRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +++  L+ P+ + +     T   I       Y    K+       L 
Sbjct: 175 LLFSATMPTAIKNLAKTILKEPEFVTLTKSDVTNSKI---TQTFYVVDEKERDDALIRLF 231

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  IIFC  KK+V  L   L  QGF   A+HG+++Q+ R + +  FK   +++++
Sbjct: 232 DFKNPKKSIIFCRTKKDVDRLSTFLVSQGFMAKALHGDMEQKQREEAIRAFKSSKLEILI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HVFN+ +P  +E+Y+HRIGRTGRAG+ G A ++V   + + +  I
Sbjct: 292 ATDVAARGLDVNDVTHVFNYHLPFDSESYVHRIGRTGRAGKEGMAISIVTPHEFRMLQKI 351

Query: 361 EKLIEKKVD 369
           EK I  K++
Sbjct: 352 EKSIGTKLE 360


>gi|212543663|ref|XP_002151986.1| RNA helicase (Dbp), putative [Penicillium marneffei ATCC 18224]
 gi|210066893|gb|EEA20986.1| RNA helicase (Dbp), putative [Penicillium marneffei ATCC 18224]
          Length = 554

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 129/380 (33%), Positives = 207/380 (54%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ KPT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 126 SFDEAGFPNYVLSEVKAQGFAKPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 185

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      +    P  LIL PTRELA Q+     K+G++  +    + GG+P   Q + L
Sbjct: 186 HINAQPLLSPGDGPIVLILAPTRELAVQIQTEISKFGRSSRIRNTCVYGGVPKGPQIRDL 245

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 246 SRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 305

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T ++SAT   E+++++ +FL +  ++ + +   +A       V   + + K+  +++ L 
Sbjct: 306 TCMWSATWPKEVRQLASDFLNDFIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLE 365

Query: 240 QSQDTMKNGIIFCNQKKNV-VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +  KN  +     K V  ++   L + G+   +IHG+  Q  R  +L  FK G   +
Sbjct: 366 KIMEDRKNKCLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLQEFKNGKSPI 425

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A T    ++ K   
Sbjct: 426 MVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQAR 485

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    ++  L  +
Sbjct: 486 DLVTILSEAKQQIDPRLHEM 505


>gi|157736313|ref|YP_001488996.1| DEAD-box ATP dependent DNA helicase [Arcobacter butzleri RM4018]
 gi|157698167|gb|ABV66327.1| ATP-dependent RNA helicase, DEAD box family [Arcobacter butzleri
           RM4018]
          Length = 516

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 131/369 (35%), Positives = 206/369 (55%), Gaps = 9/369 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ +AG+ +P+PIQ + IP +L   D+ G A TGTGKTA+F LP+L
Sbjct: 1   MTFNDFNFKELLQKAIDEAGFKEPSPIQEQAIPYILDGRDIVGQAHTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++           +++ PTRELA QV+D   ++GK   +  A + GG  +  Q K +E
Sbjct: 61  NKIKA----KSGVEAVVIVPTRELAMQVSDELYRFGKFLGINTATVYGGQAYARQIKLIE 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             + ++      +     RG  +    + +++DEAD MLDMGF+  I+ I + +P  RQT
Sbjct: 117 NSSVIVATPGRFLDLL--RGDKISIKPKFVILDEADEMLDMGFLDDIKEIFTFLPENRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ +++  L+ P+ + +     T   I       Y    K+       L 
Sbjct: 175 LLFSATMPTAIKNLAKTILKEPEFVTLTKSDVTNSKI---TQTFYVVDEKERDDALIRLF 231

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  IIFC  KK+V  L   L  QGF   A+HG+++Q+ R + +  FK   +++++
Sbjct: 232 DFKNPKKSIIFCRTKKDVDRLSTFLVSQGFMAKALHGDMEQKQREEAIRAFKSSKLEILI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HVFN+ +P  +E+Y+HRIGRTGRAG+ G A ++V   + + +  I
Sbjct: 292 ATDVAARGLDVNDVTHVFNYHLPFDSESYVHRIGRTGRAGKEGMAISIVTPHEFRMLQKI 351

Query: 361 EKLIEKKVD 369
           EK I  K++
Sbjct: 352 EKSIGTKLE 360


>gi|163851993|ref|YP_001640036.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|240139120|ref|YP_002963595.1| RNA helicase [Methylobacterium extorquens AM1]
 gi|163663598|gb|ABY30965.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           PA1]
 gi|240009092|gb|ACS40318.1| RNA helicase [Methylobacterium extorquens AM1]
          Length = 510

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 146/396 (36%), Positives = 231/396 (58%), Gaps = 8/396 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL+  V+ A+ +AGYV PTPIQ + +P  ++  D+CGIAQTGTGKTA+F LP+L 
Sbjct: 3   QFTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILH 62

Query: 62  ILEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L     R       +L   PTRELA+Q+AD+F  YG++   T  ++ GG+    Q + +
Sbjct: 63  RLSLDSRRAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQERAI 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR++D  +R  L +  +EILV+DEAD+MLD+GFI  ++ I  ++P  RQ
Sbjct: 123 APGVDILVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAKRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +L FSATM   +  +++ +L NP ++ V   ++TAE ++   +  +    +        +
Sbjct: 183 SLFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCHTGAKQAL---LNHV 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                ++  ++F   K     +   L+K      AIHGN  Q  R + L+ F++G+ +++
Sbjct: 240 LRDPKIERVLVFTRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSCRVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV N+D+PN  E+Y+HRIGRT RAG  G+A +    E+  ++  
Sbjct: 300 VATDIAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRD 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           IE+   +K+  + G      PP  +   AQ N A +
Sbjct: 360 IERTTRQKIP-VGGFPEGFVPPTRQ--EAQDNAAEE 392


>gi|304413058|ref|ZP_07394531.1| RNA helicase [Candidatus Regiella insecticola LSR1]
 gi|304283901|gb|EFL92294.1| RNA helicase [Candidatus Regiella insecticola LSR1]
          Length = 446

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 156/414 (37%), Positives = 236/414 (57%), Gaps = 6/414 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ A+ +  Y  PTPIQ K IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 36  MSFDSLGLNADILRAITEQKYSAPTPIQEKAIPEVLAGRDLMASAQTGTGKTAGFTLPLL 95

Query: 61  T---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQ+ DN + Y +   L   ++ GG+    Q  
Sbjct: 96  QLLSENQSLIKGRRPVRALILTPTRELAAQIGDNVKNYSEFLKLRSMVVFGGVSINPQMM 155

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + +  IEILV+DEADRMLDMGFI  I+ I + +P  
Sbjct: 156 KLRGGVDILVATPGRLLDLEHQNAVDLAKIEILVLDEADRMLDMGFIHDIRRILAKLPAK 215

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +++++ +++  L NP  IEV+  ++TA+ I            ++      
Sbjct: 216 RQNLLFSATFSNDIKLLAKKLLNNPAYIEVSPGNTTAKHITQRVHFVDKSRKRQL---LS 272

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +      +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G I+
Sbjct: 273 YMIGSQNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIR 332

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 333 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAECSGEAISLVCVDEHKLL 392

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
             IE+L++ ++  +  D    +P ++   I      R ++   +      R ++
Sbjct: 393 RDIERLLKNEIPRIAIDGYQPDPTIKAEPIQNGRQGRGSSNRGKNKNQTSRSRR 446


>gi|262163925|ref|ZP_06031664.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus VM223]
 gi|262027453|gb|EEY46119.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus VM223]
          Length = 416

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 205/371 (55%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L P ++ A+ + G+ +PT +Q + IP  L   DV   A TGTGKTA+F +P L 
Sbjct: 4   TFADLELDPVLLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L     R   P  + IL PTRELA QVA+  +   KN  L +  + GG+ ++     L 
Sbjct: 64  YLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L++ +  +     IE L++DEADRMLDMGF P +  +++   + +QT
Sbjct: 124 TTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSAECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     ++  + + L+NP  I+   P    + I   +        K         
Sbjct: 184 LLFSATLEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWYHRADDMPHKVE---LLKK 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F   ++ + +L   LEK       I G + Q  R   ++ F+EG++ ++
Sbjct: 241 ILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMQQDRRNNAITRFREGSVNIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PD+ HV NFD+P  A+ Y+HRIGRTGRAG+ G A +LV   D   +  
Sbjct: 301 LATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMAR 360

Query: 360 IEKLIEKKVDW 370
           +E+ I+++V  
Sbjct: 361 VERYIKEEVKE 371


>gi|262172263|ref|ZP_06039941.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus MB-451]
 gi|261893339|gb|EEY39325.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus MB-451]
          Length = 416

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 205/371 (55%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L P ++ A+ + G+ +PT +Q + IP  L   DV   A TGTGKTA+F +P L 
Sbjct: 4   TFADLELDPVLLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L     R   P  + IL PTRELA QVA+  +   KN  L +  + GG+ ++     L 
Sbjct: 64  YLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L++ +  +     IE L++DEADRMLDMGF P +  +++   + +QT
Sbjct: 124 TTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSAECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     ++  + + L+NP  I+   P    + I   +        K         
Sbjct: 184 LLFSATLEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWYHRADDMPHKVE---LLKK 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F   ++ + +L   LEK       I G + Q  R   ++ F+EG++ ++
Sbjct: 241 ILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFREGSVNIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PD+ HV NFD+P  A+ Y+HRIGRTGRAG+ G A +LV   D   +  
Sbjct: 301 LATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMAR 360

Query: 360 IEKLIEKKVDW 370
           +E+ I+++V  
Sbjct: 361 VERYIKEEVKE 371


>gi|258620330|ref|ZP_05715368.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM573]
 gi|258624701|ref|ZP_05719635.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM603]
 gi|258582988|gb|EEW07803.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM603]
 gi|258587209|gb|EEW11920.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM573]
          Length = 416

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 205/371 (55%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L P ++ A+ + G+ +PT +Q + IP  L   DV   A TGTGKTA+F +P L 
Sbjct: 4   TFADLELDPVLLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L     R   P  + IL PTRELA QVA+  +   KN  L +  + GG+ ++     L 
Sbjct: 64  YLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L++ +  +     IE L++DEADRMLDMGF P +  +++   + +QT
Sbjct: 124 TTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSAECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     ++  + + L+NP  I+   P    + I   +        K         
Sbjct: 184 LLFSATLEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWYHRADDMPHKVE---LLKK 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F   ++ + +L   LEK       I G + Q  R   ++ F+EG++ ++
Sbjct: 241 ILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFREGSVNIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PD+ HV NFD+P  A+ Y+HRIGRTGRAG+ G A +LV   D   +  
Sbjct: 301 LATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMAR 360

Query: 360 IEKLIEKKVDW 370
           +E+ I+++V  
Sbjct: 361 VERYIKEEVKE 371


>gi|115525740|ref|YP_782651.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris BisA53]
 gi|115519687|gb|ABJ07671.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           BisA53]
          Length = 490

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 170/466 (36%), Positives = 245/466 (52%), Gaps = 17/466 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+  +  A+ +  Y  PTPIQ +TIPL L   DV GIAQTGTGKTASF LP+L 
Sbjct: 17  SFQVFGLAEPLTRALAEENYTTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILH 76

Query: 62  ILEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            + + R +       +L   PTREL+ Q+ ++F  YG++  L  AL IGG+P   Q + +
Sbjct: 77  RMLENRIKPLPKTCRVLVLSPTRELSGQILESFNAYGRHIRLASALAIGGVPMGRQVRSI 136

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR+LD      L +  +E LV+DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 137 MPGLDVLVATPGRLLDLVQTNALKLTQVEFLVLDEADRMLDMGFIHDIRKIVAKLPIKRQ 196

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM  ++  ++E  L++P R+ V   +ST + I    +            +   +
Sbjct: 197 TLFFSATMPKDIADLAEQMLRDPARVAVTPVASTVDRITQRVIQLDHSAK---PTVLAQI 253

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             QD +   ++F   K     +   L + G +  AIHGN  Q  R ++L+ F+ G I  +
Sbjct: 254 LKQDDVNRALVFTRTKHGADKVVKGLARAGIAAEAIHGNKSQNHRERVLAAFRTGEILTL 313

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV NFD+PN  E Y+HRIGRT RAG  G A +L A E++ ++  
Sbjct: 314 VATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGAEGVAISLCAGEELAYLRD 373

Query: 360 IEKLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           IEKLI   +   +       D ++   P      A H HA +    P       RR+   
Sbjct: 374 IEKLIRITLPREDRRTPGHRDTAAKTSPHRGAHAAPHVHAPRGEHAPGSKAANRRRRPAG 433

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRG 459
            S    +P   +E         Q +  +  G +G   AF+  ++R 
Sbjct: 434 GSV--AVPTARAETSRHEPSRPQHHGKE--GLQG--VAFLHRESRA 473


>gi|332072754|gb|EGI83235.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA17545]
          Length = 524

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 145/373 (38%), Positives = 224/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIRT---EEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|315126209|ref|YP_004068212.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315014723|gb|ADT68061.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 465

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 164/468 (35%), Positives = 249/468 (53%), Gaps = 8/468 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AVL+ GY  PTPIQ + IP ++ R DV   AQTGTGKTA F LP++
Sbjct: 1   MSFDGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIARRDVMAAAQTGTGKTAGFTLPLI 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G   +    R LIL PTRELA QV++N E+Y K+ +++  ++ GG+    Q ++L
Sbjct: 61  ERLSSGTKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR++D  N+  +  ++IE+LV+DEADRMLDMGFI  I+ + + +P  RQ
Sbjct: 121 RKGVDILVATPGRLIDLHNQNAVKFDSIEVLVLDEADRMLDMGFIHDIKRLIAKMPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +D+++ +++  + +P  I V   ++TA+++  C  A                
Sbjct: 181 NLMFSATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKARKTALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  ++F   K     L   LE+      AIHGN  Q +R+K L  FK G ++++
Sbjct: 238 IRSNNWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALEGFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLDI ++ HV N+D+PN  E+Y+HRIGRTGRAG  G A + V  +D   +  
Sbjct: 298 VATDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTVDDAVDLYG 357

Query: 360 IEKLIEKKVDWLNGD-LSSLNPPLEK-IDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE+ I + +     +     NP  E+ +D       +     P      D  K N     
Sbjct: 358 IERFIGELIPRAEEEGFEPANPVAERALDARPLPAKKPKKKQPFNKPKSDSSKPNSKKPN 417

Query: 418 SHIPLKESEK--ISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
           +        +    K      EN  +    R ++      + R   ND
Sbjct: 418 NGGNGTGPRRGGSKKPAAKTDENAQNPWAKRQSVGGTGQRRRRPANND 465


>gi|296876849|ref|ZP_06900897.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           15912]
 gi|296432351|gb|EFH18150.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           15912]
          Length = 523

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 143/373 (38%), Positives = 228/373 (61%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS +++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++       + + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDVDN---TVIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N+IE L++DEAD ML+MGF+  I+ I S VP TRQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + ++++   F++ P+ +++     T + ++  ++                  
Sbjct: 178 LLFSATMPEAIKRIGVQFMKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  IIF   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELAIIFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNVDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKTGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  +  
Sbjct: 355 ENLTKKRMKGMKP 367


>gi|294497529|ref|YP_003561229.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
 gi|294347466|gb|ADE67795.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
          Length = 481

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 136/407 (33%), Positives = 222/407 (54%), Gaps = 12/407 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+  GLS KV  A+    Y  PT +Q K +P+ L+  DV   +QTG+GKTASF +P+  
Sbjct: 5   SFSQYGLSDKVAKALSSLQYNHPTEVQSKVLPIALEERDVVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++     +   P+ L+L PTRELAAQV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  LVNWEENK---PQALVLTPTRELAAQVKEDITNIGRFKRIKAAAVYGKSPFAKQKVELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +  L +  I  LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKETLALEKIRYLVIDEADEMLNMGFIDQVEAIIQHLPSERVTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++++S  +    K+       +   T      +  +  +++   L + + +
Sbjct: 182 LFSATLPEDIEELSRKY---MKKPVDVEIKANGLTTSTIDHSVISVENERKFELLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++ V  L   L+  G+    IHG + Q  R +++++FK+G  + +VA
Sbjct: 239 VENPDSCIIFCRTQEQVNTLLDDLDDFGYPCDKIHGAMVQEDRFEVMNDFKKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG+ GKA T V   + + +  IE
Sbjct: 299 TDVAARGIDIDNITHVINYDLPLEKESYVHRTGRTGRAGKKGKAITFVTPYEKRMLSEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           + I   +       +S  P  E++  A      K N  P+       
Sbjct: 359 EYIGFSIP------TSAPPSKEEVQQAASAFTEKINERPEVKKDKSE 399


>gi|114567412|ref|YP_754566.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338347|gb|ABI69195.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 530

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 155/403 (38%), Positives = 233/403 (57%), Gaps = 12/403 (2%)

Query: 1   MDFA---DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           M F     +GL   ++  + + G+ KPTPIQ+K+IP+ +   D+ G AQTGTGKTASF +
Sbjct: 1   MSFENFYSMGLKTDLLQMIDEKGFEKPTPIQVKSIPIAMAGLDLMGQAQTGTGKTASFGI 60

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           P+L  + KG       + L+L PTRELA QV +      +   + V  + GG   E Q +
Sbjct: 61  PILNRVIKGEG----LQALVLCPTRELAVQVTEEISSLSRRMRIQVLAIYGGQSIELQLR 116

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L R  ++++ TPGR++DH NRG + ++ ++ +V+DEAD MLDMGF+P IQ I S  P  
Sbjct: 117 SLRRNPEIIVGTPGRLMDHMNRGTISLSPLKYVVLDEADEMLDMGFLPDIQKILSQCPRE 176

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT LFSAT+ DE++++   F++ P+ I + +P  T   IE      Y   S++      
Sbjct: 177 RQTFLFSATLPDEVRELGTKFMKQPEIILIESPERTVPEIEQ---YYYQVNSRRKIETLC 233

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IFC  K+N   L   L  +G++  A+HG++ QR R  ++  F++G  +
Sbjct: 234 RIIDAQQPPISLIFCRTKRNADELARVLTSRGYNADALHGDMSQRERDHVMHGFRQGNTK 293

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+DLAARGLDI  V HVFNFD+P   ++YIHR+GRTGRAGR G A TLV    I+ +
Sbjct: 294 ILVATDLAARGLDIELVTHVFNFDIPEDLDSYIHRVGRTGRAGRSGIAITLVEPTQIRLL 353

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
             IE+   K+++     L +L   +EK         R+ +  P
Sbjct: 354 RMIERHTGKRIER--ALLPTLAEAVEKRQDLLLERVRQASAEP 394


>gi|326479821|gb|EGE03831.1| ATP-dependent RNA helicase DBP2 [Trichophyton equinum CBS 127.97]
          Length = 536

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 133/380 (35%), Positives = 217/380 (57%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ KPTPIQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 121 TFDEAGFPQYVMSEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 180

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 181 HINAQPLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQIRDL 240

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 241 TRGVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQ 300

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T ++SAT   ++++++ +FLQ+  ++ + + + +A       V   +++ K+  +++ L 
Sbjct: 301 TCMWSATWPKDVRQLANDFLQDYIQVYIGSQALSANHRITQIVEVVSEFEKRDRMIKHLE 360

Query: 240 QSQDTMKNGIIFCNQKKNV-VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +  K+ ++     K V  ++   L + G+   +IHG+  Q  R  +L+ FK G   +
Sbjct: 361 RIMEDKKSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPI 420

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ D+ HV N D PN +E+Y+HRIGRTGRAG +G A TL   E+ K   
Sbjct: 421 MVATDVASRGIDVRDITHVLNHDYPNNSEDYVHRIGRTGRAGANGTAITLFTTENAKQAR 480

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + K++ +    ++  L+ +
Sbjct: 481 DLVKILTESKQQIDPRLAEM 500


>gi|294498466|ref|YP_003562166.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
 gi|294348403|gb|ADE68732.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
          Length = 466

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 143/392 (36%), Positives = 215/392 (54%), Gaps = 13/392 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  LS  +  AV + G+ + TPIQ + IP+ +   D+ G AQTGTGKT +F +P++ 
Sbjct: 3   KFSDFNLSKDIEKAVHNLGFEEATPIQAEAIPIAMAGKDLIGQAQTGTGKTTAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +E G   ++     +L PTRELA QVA+   + G+   +    + GG     Q K L+ 
Sbjct: 63  RVELGEEGIQGI---VLAPTRELAIQVAEELNRIGQVKGVKTLPIYGGQDINRQIKALKN 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++  TPGR+ DH  R  + +N+I   V+DEAD ML+MGFI  IQ+I   +    QTL
Sbjct: 120 RPHIISATPGRLKDHMKRRTIRLNHIRTAVLDEADEMLNMGFIEDIQSILGGISSPHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM+ ++Q +++ F+ +P+ ++V     T + IE  ++                   
Sbjct: 180 LFSATMSKQVQSLAQKFMNDPELVKVKAKELTVKNIEQQYMEIPENRKFDVLCNL---VD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   KK V  L   L+K+G++   IHG++ Q  R  ++  FK  TI++MVA
Sbjct: 237 LQVPDLAIVFGRTKKRVDELAEGLKKRGYAAEGIHGDLTQSKRADVIRQFKNHTIEIMVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG  G A T +   +  H+  IE
Sbjct: 297 TDVAARGLDITGVSHVYNFDIPQDPESYVHRIGRTGRAGTKGLAVTFITPRERNHLKVIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
            + + K       +S  +PP     +A H  A
Sbjct: 357 DVTKTK-------MSRQSPPTSSEVMAGHQEA 381


>gi|145634582|ref|ZP_01790291.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
 gi|229844418|ref|ZP_04464558.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 6P18H1]
 gi|145268127|gb|EDK08122.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
 gi|229812667|gb|EEP48356.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 6P18H1]
          Length = 439

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 138/398 (34%), Positives = 212/398 (53%), Gaps = 6/398 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP + 
Sbjct: 5   QFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++       
Sbjct: 65  HLLDYPRRKPGSPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QT
Sbjct: 125 TNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL       L N     V+   S  E  +      +A  ++    L     
Sbjct: 185 LLFSATLEGELLVDFAERLLNDPVK-VDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +  GI+F  ++++   L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 244 ETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPPL--EKIDIAQHNHAR 394
           ++  E+  K   L G      PP   E   +++   AR
Sbjct: 364 KRYTEEILKARILAGLEPRTKPPKDGEVKSVSKKQKAR 401


>gi|329923450|ref|ZP_08278932.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
 gi|328941342|gb|EGG37636.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
          Length = 538

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 150/448 (33%), Positives = 241/448 (53%), Gaps = 20/448 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LG+  + V  + + G  +PTP+Q ++IPL+LQ  DV   A+TGTGKT +F+LP+L 
Sbjct: 13  NFQQLGIDEQRVRKLKEQGITEPTPVQQESIPLLLQGKDVIARAKTGTGKTLAFMLPILQ 72

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEK--YGKNYNLTVALLIGGIPFEAQNKKL 119
            ++    +   P+ LI+ PTRELA Q+ +  +K   G+   + +  + GG   E Q +KL
Sbjct: 73  HIDP---KRAYPQALIIAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVEKQLRKL 129

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G  ++I TPGR+LDH  RG L +  ++ LV+DEAD+ML MGF+  ++ +   +P+ RQ
Sbjct: 130 EGGRQLIIGTPGRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDEVEALIHALPYRRQ 189

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   +++++ N++  P  I +   S          V      SK+     + +
Sbjct: 190 TMLFSATMPAGVKQLAGNYMNQPVDIVIKGASPIPLEQIQQVVVECTDRSKQD--ALRAM 247

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      IIFC  K+    L  +L   G+    +HG++ Q  R  ++  F+E  +QL+
Sbjct: 248 IEEHNPFLAIIFCRTKRRATTLNEALLAHGYQSDELHGDLSQAKREAVMKRFREAKLQLL 307

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  V HVFN+D+P+  E+YIHRIGRTGRAG  G A T  A +D+  +  
Sbjct: 308 VATDVAARGLDVEGVTHVFNYDMPHDVESYIHRIGRTGRAGGSGMAITFAAGKDLNDLQR 367

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+ I +++  +  D             +     R+++    + TG  R+ +N SS +S 
Sbjct: 368 IEEGISQRLKRVRYD-------------SAAGSLRESSGSSGRDTGRPRKARNVSSLESD 414

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRG 447
               +    S        +  +  G   
Sbjct: 415 NERGQGRSRSDRGTGSGRSRGNEQGRGS 442


>gi|255533113|ref|YP_003093485.1| DEAD/DEAH box helicase domain-containing protein [Pedobacter
           heparinus DSM 2366]
 gi|255346097|gb|ACU05423.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 444

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 162/415 (39%), Positives = 238/415 (57%), Gaps = 10/415 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L+ +++ AV DAG+ + TPIQ K I  VL   D+ GIAQTGTGKTA++VLP+L 
Sbjct: 4   KFEDFNLNRQILNAVADAGFTEATPIQEKAIAPVLSGQDIFGIAQTGTGKTAAYVLPILM 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+  +      R LIL PTRELA Q+A++ + +    +L   ++ GGI  + Q ++++ 
Sbjct: 64  QLKYAQGDAA--RALILAPTRELAMQIAEHVKMFAAYTDLRSVVIFGGIGPKTQIEQIKA 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D++I TPGR LD +  G +    ++ LV+DEAD+M+DMGFI  I  I  +VP  RQ L
Sbjct: 122 GVDIIIATPGRFLDIYLAGHINTQYLKFLVLDEADKMMDMGFIGSIHRILEVVPRKRQNL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM++ +QK++ +FL+NP  IEV   ++ A T+            K    L Q L  
Sbjct: 182 LFSATMSNLVQKIAGDFLKNPTIIEVAEQATPAATVTQTLYEVPNF--KTKINLLQHLMK 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGF---SVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            D     +I   + K V +  +S   + F   +V  IH N  Q +R+  ++NFKEG I++
Sbjct: 240 NDEEFKRLIIFCKTKTVADNIYSFITRRFGEDAVRVIHANKGQNTRINSINNFKEGNIRV 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RG+D+ +V HV NFDVP   E+Y+HRIGRTGRA   G A T  +  +  +I 
Sbjct: 300 LVATDVASRGIDVSEVSHVINFDVPIIIEDYVHRIGRTGRAYAKGDALTFCSPAEKYYIQ 359

Query: 359 AIEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            IEKLI +++  +           P  EK  IA+    +K    P     F  +K
Sbjct: 360 KIEKLIRQQIPVVPLPPEVFVEETPYDEKQAIARAIDDQKRKDDPDFKGAFHEKK 414


>gi|163859073|ref|YP_001633371.1| putative ATP-dependent RNA helicase [Bordetella petrii DSM 12804]
 gi|163262801|emb|CAP45104.1| putative ATP-dependent RNA helicase [Bordetella petrii]
          Length = 584

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 155/446 (34%), Positives = 238/446 (53%), Gaps = 7/446 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F  LGL+P ++ A+  AG+  PTP+Q   IP  L  HD+   +QTG+GKTA+F+LP +
Sbjct: 1   MSFETLGLAPTLLSALQAAGFSAPTPVQAAAIPQALAGHDLMVSSQTGSGKTAAFMLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
             I  +   +    + L+L PTRELA QV +    YG+N      A ++GG+P+ AQ K 
Sbjct: 61  NRIAGQPGNKGVGVQVLVLTPTRELALQVTEATGSYGRNLPGLRTATVVGGMPYGAQLKA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R  DVL+ TPGR++DH   G++ +N +  LV+DEADRMLDMGFI  I+ I   +P  R
Sbjct: 121 LSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPQER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+   + K++   ++ P+RIE+         I    +       K    L   
Sbjct: 181 QTLLFSATLDGTVAKLAARMMREPQRIEMAGQKEKHTNITQSLLYADDASHK--MQLLDH 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   I+F   K+   +L   L  QGF+  A+HG+++QR R + L+  + G +++
Sbjct: 239 VLRDAKLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLTQLQRGQLRI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + H  NFD+P +AE+Y+HRIGRTGRAGR G+A+TL    +   + 
Sbjct: 299 LVATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRTGRAGRDGQAYTLATHAERHKVR 358

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IE  I + +      ++ L P             R   P  ++  GF   +  +   + 
Sbjct: 359 RIEHYIGQSIT--PETIAGLEPKRTPRPF-TGGPGRGGKPFGKRPGGFGGDRPQFREGRG 415

Query: 419 HIPLKESEKISKLQQDIQENDADSLG 444
                + E       + +  D    G
Sbjct: 416 FRADAQREGGGWRGYESKPRDGAPRG 441


>gi|330468685|ref|YP_004406428.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
 gi|328811656|gb|AEB45828.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
          Length = 566

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 142/366 (38%), Positives = 208/366 (56%), Gaps = 1/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL  +++ A+   GY +PTPIQ + I  +L   D+ G A TGTGKTA+F LP+L  
Sbjct: 17  FADLGLRSELLAALSALGYEEPTPIQREAIGPLLAGRDLLGQAATGTGKTAAFALPLLQR 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +   R     P  L+L PTRELA QV++ F +YGK+    V  + GG P   Q + L+ G
Sbjct: 77  MPDERP-TGDPVALVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALDNG 135

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR LDH  RG L + N+  +V+DEAD MLDMGF   I+ I    P  RQT+L
Sbjct: 136 VDVVVATPGRALDHIARGTLRLGNLATVVLDEADEMLDMGFAEDIEAILEHTPEQRQTVL 195

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +  ++   L +P RI +      A        + Y             +   
Sbjct: 196 FSATMPSRIDGMARAHLTDPVRILIAREQPVAGEAPRVRQSAYLVARAHKPAALGRVLDV 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           ++    I+FC  ++ V  L  ++  +G+   A+HG + Q  R +++   + GT  L+VA+
Sbjct: 256 ESPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRGGTADLLVAT 315

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  + HV N+DVP+  E+Y+HRIGR GRAGR G A TL    + + +  IE+
Sbjct: 316 DVAARGLDVEQLSHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIER 375

Query: 363 LIEKKV 368
           +  +++
Sbjct: 376 VTGQRI 381


>gi|238493219|ref|XP_002377846.1| RNA helicase (Dbp), putative [Aspergillus flavus NRRL3357]
 gi|317157028|ref|XP_001826178.2| ATP-dependent RNA helicase dbp2 [Aspergillus oryzae RIB40]
 gi|220696340|gb|EED52682.1| RNA helicase (Dbp), putative [Aspergillus flavus NRRL3357]
          Length = 556

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 128/380 (33%), Positives = 208/380 (54%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ +PT IQ +  P+ L   DV GIA+TG+GKT S+ LP + 
Sbjct: 133 TFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIV 192

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 193 HINAQPLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQIRDL 252

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 253 SRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQ 312

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T ++SAT   E+++++ +FL +  ++ + +   +A       V   + + K+  +++ L 
Sbjct: 313 TCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLE 372

Query: 240 QSQDTMKNGIIFCNQKKN-VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   N  +     K     +   L + G+   +IHG+  Q+ R  +L+ FK G   +
Sbjct: 373 KIMENRGNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPI 432

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A T    ++ K   
Sbjct: 433 MVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQAR 492

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    ++  L+ +
Sbjct: 493 DLVTILTEAKQQIDPRLAEM 512


>gi|145630403|ref|ZP_01786184.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|260582313|ref|ZP_05850106.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
 gi|144984138|gb|EDJ91575.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|260094681|gb|EEW78576.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
          Length = 444

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 138/398 (34%), Positives = 212/398 (53%), Gaps = 6/398 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP + 
Sbjct: 5   QFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++       
Sbjct: 65  HLLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QT
Sbjct: 125 TNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL       L N     V+   S  E  +      +A  ++    L     
Sbjct: 185 LLFSATLEGELLVDFAERLLNDPVK-VDAEPSRRERKKINQWYYHADSNEHKIKLLVRFI 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +  GI+F  ++++   L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 244 ETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPPL--EKIDIAQHNHAR 394
           ++  E+  K   L G      PP   E   +++   AR
Sbjct: 364 KRYTEEILKARILAGLEPRTKPPKDGEVKSVSKKQKAR 401


>gi|121728399|ref|ZP_01681427.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V52]
 gi|147674594|ref|YP_001216154.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
 gi|153215838|ref|ZP_01950170.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 1587]
 gi|153802013|ref|ZP_01956599.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-3]
 gi|153829171|ref|ZP_01981838.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 623-39]
 gi|229512921|ref|ZP_04402388.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TMA 21]
 gi|229525313|ref|ZP_04414718.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae bv. albensis
           VL426]
 gi|229530466|ref|ZP_04419854.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 12129(1)]
 gi|254226532|ref|ZP_04920115.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V51]
 gi|254291900|ref|ZP_04962682.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae AM-19226]
 gi|262169959|ref|ZP_06037649.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC27]
 gi|262191213|ref|ZP_06049412.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae CT 5369-93]
 gi|297580786|ref|ZP_06942712.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC385]
 gi|121629333|gb|EAX61765.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V52]
 gi|124114555|gb|EAY33375.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 1587]
 gi|124122472|gb|EAY41215.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-3]
 gi|125620936|gb|EAZ49287.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V51]
 gi|146316477|gb|ABQ21016.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
 gi|148875360|gb|EDL73495.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 623-39]
 gi|150422186|gb|EDN14151.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae AM-19226]
 gi|227012485|gb|ACP08695.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
 gi|229332239|gb|EEN97727.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 12129(1)]
 gi|229338894|gb|EEO03911.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae bv. albensis
           VL426]
 gi|229350170|gb|EEO15123.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TMA 21]
 gi|259156570|gb|ACV96513.1| ATP-dependent RNA helicase SrmB [Vibrio fluvialis Ind1]
 gi|262021693|gb|EEY40404.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC27]
 gi|262032915|gb|EEY51454.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae CT 5369-93]
 gi|297535202|gb|EFH74037.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC385]
 gi|327483459|gb|AEA77866.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae LMA3894-4]
          Length = 423

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 205/371 (55%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L P ++ A+ + G+ +PT +Q + IP  L   DV   A TGTGKTA+FV+P L 
Sbjct: 4   TFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L     R   P  + IL PTRELA QVA+  +   KN  L +  + GG+ ++     L 
Sbjct: 64  YLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L++ +  +     IE L++DEADRMLDMGF P +  +++   + +QT
Sbjct: 124 TTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     ++  + + L++P  ++   P    + I   +        K         
Sbjct: 184 LLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVE---LLKK 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F   ++ + +L   LEK       I G + Q  R   +S F+EG + ++
Sbjct: 241 ILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PD+ HV NFD+P  A+ Y+HRIGRTGRAG+ G A +LV   D   +  
Sbjct: 301 LATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMAR 360

Query: 360 IEKLIEKKVDW 370
           +E+ I+++V  
Sbjct: 361 VERYIKEEVKE 371


>gi|66825831|ref|XP_646270.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           discoideum AX4]
 gi|74897412|sp|Q55D61|IF4A_DICDI RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=ATP-dependent RNA helicase tifA
 gi|60474009|gb|EAL71946.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           discoideum AX4]
          Length = 405

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL  +++  + + G+ KP+ IQ + I  +++  D    AQ+GTGKTA+F +  L 
Sbjct: 33  TFESMGLREELLRGIFNYGFEKPSAIQQRAILPIIKGRDTIAQAQSGTGKTATFSIGALQ 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +E     VR P+ LIL PTRELA Q+        +  N+ V   +GG       KKLE 
Sbjct: 93  CVEVN---VRSPQVLILSPTRELAQQIQKVALALSEFMNIQVHACVGGKNLSDDVKKLET 149

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+LD   R  L   +I+++++DEAD ML +GF   I ++   +P   Q +
Sbjct: 150 GVHIVSGTPGRVLDMITRKSLPTRHIKMMILDEADEMLSLGFQQQINDVYRYLPNGTQIV 209

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+T ++  ++E F+  P RI +     T + I+  FV+   +  K   L    +  
Sbjct: 210 LVSATLTQDVVSMTEKFMTKPVRILLKRDELTLDGIKQFFVSVEKEDWKFGTLCD--IYD 267

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN KK V  L   +    F+V ++HG++ Q+ R +I+ +F+ G  ++++ 
Sbjct: 268 SLTITQAVIFCNTKKKVDQLTEQMRDANFTVASMHGDMVQKEREEIIKSFRSGENRVLIT 327

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V   DI+ +  IE
Sbjct: 328 TDILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAINFVKNSDIRILRDIE 387

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  + +S+
Sbjct: 388 QFYSTQIDEMPVNFASI 404


>gi|15640680|ref|NP_230309.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121587852|ref|ZP_01677609.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 2740-80]
 gi|153818685|ref|ZP_01971352.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae NCTC 8457]
 gi|153822294|ref|ZP_01974961.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|227080841|ref|YP_002809392.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae M66-2]
 gi|229505718|ref|ZP_04395228.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae BX 330286]
 gi|229508708|ref|ZP_04398201.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|229519543|ref|ZP_04408986.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC9]
 gi|229608737|ref|YP_002879385.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MJ-1236]
 gi|254850991|ref|ZP_05240341.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MO10]
 gi|255743880|ref|ZP_05417836.1| ATP-dependent RNA helicase SrmB [Vibrio cholera CIRS 101]
 gi|262156099|ref|ZP_06029218.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae INDRE 91/1]
 gi|298500776|ref|ZP_07010579.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MAK 757]
 gi|9655098|gb|AAF93826.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547888|gb|EAX57972.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 2740-80]
 gi|126510765|gb|EAZ73359.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae NCTC 8457]
 gi|126520190|gb|EAZ77413.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|227008729|gb|ACP04941.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae M66-2]
 gi|229344232|gb|EEO09207.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC9]
 gi|229354232|gb|EEO19162.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|229357941|gb|EEO22858.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae BX 330286]
 gi|229371392|gb|ACQ61815.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MJ-1236]
 gi|254846696|gb|EET25110.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MO10]
 gi|255738511|gb|EET93900.1| ATP-dependent RNA helicase SrmB [Vibrio cholera CIRS 101]
 gi|262030135|gb|EEY48780.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae INDRE 91/1]
 gi|297540557|gb|EFH76615.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MAK 757]
          Length = 423

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 205/371 (55%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L P ++ A+ + G+ +PT +Q + IP  L   DV   A TGTGKTA+FV+P L 
Sbjct: 4   TFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L     R   P  + IL PTRELA QVA+  +   KN  L +  + GG+ ++     L 
Sbjct: 64  YLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L++ +  +     IE L++DEADRMLDMGF P +  +++   + +QT
Sbjct: 124 TTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     ++  + + L++P  ++   P    + I   +        K         
Sbjct: 184 LLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVE---LLKK 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F   ++ + +L   LEK       I G + Q  R   +S F+EG + ++
Sbjct: 241 ILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PD+ HV NFD+P  A+ Y+HRIGRTGRAG+ G A +LV   D   +  
Sbjct: 301 LATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMAR 360

Query: 360 IEKLIEKKVDW 370
           +E+ I+++V  
Sbjct: 361 VERYIKEEVKE 371


>gi|261212229|ref|ZP_05926515.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341]
 gi|260838837|gb|EEX65488.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341]
          Length = 421

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 129/371 (34%), Positives = 204/371 (54%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L P ++ A+ + G+ +PT +Q + IP  L   DV   A TGTGKTA+F +P L 
Sbjct: 4   TFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L     R   P  + IL PTRELA QVA+  +   KN  L +  + GG+ ++     L 
Sbjct: 64  YLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L++ +  +     IE L++DEADRMLDMGF P +  +++   + +QT
Sbjct: 124 TTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     ++  + + L++P  ++   P    + I   +        K         
Sbjct: 184 LLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVE---LLKK 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F   ++ + +L   LEK       I G + Q  R   ++ F+EG + ++
Sbjct: 241 ILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFREGDVNIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PD+ HV NFD+P  A+ Y+HRIGRTGRAG+ G A +LV   D   +  
Sbjct: 301 LATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMAR 360

Query: 360 IEKLIEKKVDW 370
           +E+ I+++V  
Sbjct: 361 VERYIKEEVKE 371


>gi|126652237|ref|ZP_01724416.1| YqfR [Bacillus sp. B14905]
 gi|126590969|gb|EAZ85081.1| YqfR [Bacillus sp. B14905]
          Length = 434

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 134/437 (30%), Positives = 212/437 (48%), Gaps = 10/437 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M  + D    P +  A+ + G+ +PTPIQ + IPL+L+     G A TGTGKT SF++P+
Sbjct: 2   MSKYTDYNFQPFLQNAIAELGFTEPTPIQKEIIPLLLKGKSAIGQAHTGTGKTHSFLIPI 61

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  ++  +  V+     I  PTRELA Q+ D   +  +   +   L IGG   +    KL
Sbjct: 62  VQRIDVEKQEVQAV---ITSPTRELAQQIYDALSQLIEGTAIQAKLFIGGTDKQRSIDKL 118

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +++ TPGRI D  +   L ++   ILV+DEAD   DMGFI  I    S +P   +
Sbjct: 119 KTQPQIVVGTPGRIRDLVSAQALFVHTAPILVVDEADLAFDMGFIEEIDGFASQMPEKLE 178

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +FSAT+ ++LQ   + ++  P  + +N     AE I           SK        +
Sbjct: 179 MFVFSATIPEKLQPFLKKYMDAPVHVHMNDKRPVAEGI---DFMLVPVRSKSRNKRLLEV 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    +IF N +K   ++   L + G     IHG++  R R K++   ++   Q +
Sbjct: 236 IEGINPFLAVIFTNTRKTAEHVAGYLNEHGIRCGQIHGDLSPRDRKKMMKQVRDLEYQYI 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+DI  V HV N+++P   E +IHR+GRT RAG  G A TL    +   +  
Sbjct: 296 VATDLAARGIDIQGVSHVINYEIPEDLEFFIHRVGRTARAGNKGTAITLFEPSEEDAVVR 355

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +EK+    + ++  D+        K   A+ N  ++ N I  K+    R+ K        
Sbjct: 356 VEKM---GIPFVQMDVKDGEWSELKERHARKNRVKQENEIDVKAKALVRKPKKVKPGYKR 412

Query: 420 IPLKESEKISKLQQDIQ 436
               E EKI K ++ ++
Sbjct: 413 NMKWEMEKIKKRERRLK 429


>gi|226941463|ref|YP_002796537.1| RhlE4 [Laribacter hongkongensis HLHK9]
 gi|226716390|gb|ACO75528.1| RhlE4 [Laribacter hongkongensis HLHK9]
          Length = 457

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 153/373 (41%), Positives = 221/373 (59%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+LGL  +V  AV + GY +PTPIQ + IP VL   DV   AQTGTGKTA+F LP++
Sbjct: 2   MTFAELGLPAEVQRAVDELGYAEPTPIQARAIPEVLTGRDVLAAAQTGTGKTAAFTLPII 61

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L         P        IL PTRELA Q+A + + Y K   L    + GG+  + Q
Sbjct: 62  ARLRHYATHSVSPAMHPVRCLILTPTRELADQIAASVQSYTKYLPLRHTCVFGGVNMDPQ 121

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG D+++ TPGR+LDH  +  + +N +E+LV+DEADRMLDMGFI  I+ I + +P
Sbjct: 122 KADLMRGMDIVVATPGRLLDHLEQKTIQLNRVEMLVLDEADRMLDMGFILDIRRILAQLP 181

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            TRQTLLFSAT + E++K++  F ++P  IEV   ++TA T+E    A  A   ++    
Sbjct: 182 KTRQTLLFSATFSPEIKKLAAEFQRDPVTIEVARQNTTAATVEQAVYAVDAGQKRRLLAR 241

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
               ++   +            +               AIHG+  Q++R+  L+ FK+G 
Sbjct: 242 LINERAMSQVIVFCRTKQGADRLAR--ELRNFDRLDAEAIHGDKAQQARLDTLAAFKDGK 299

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGLD+ D+  V NFD+PN  E+Y+HRIGRTGRAG+ G A +L+  E+ K
Sbjct: 300 LRILVATDVAARGLDVSDLPFVVNFDLPNSPEDYVHRIGRTGRAGQSGVAISLMDAEEQK 359

Query: 356 HIDAIEKLIEKKV 368
            ++AIEKL  + +
Sbjct: 360 LLEAIEKLTRQTL 372


>gi|126734915|ref|ZP_01750661.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
           CCS2]
 gi|126715470|gb|EBA12335.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
           CCS2]
          Length = 435

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 156/386 (40%), Positives = 226/386 (58%), Gaps = 5/386 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  LGL+P++V  + + G   PTPIQ + IP  +   DV G+AQTG+GKTA+F LPM+
Sbjct: 1   MDFDMLGLAPRLVNVLKEQGITDPTPIQTQAIPHAMNGRDVMGLAQTGSGKTAAFGLPMI 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L K   +     +   IL PTRELA Q+ADN   Y K  +L VAL++GG    AQ K+
Sbjct: 61  HALMKAGVKPNPKTSRGLILAPTRELAKQIADNLTAYTKGSHLKVALVVGGAGIVAQTKR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+L+ TPGR++D  +R  + ++    LV+DEAD+MLDMGFI  ++ I  L+   R
Sbjct: 121 LAGGVDLLVATPGRLIDLLDRRAVRLDETIYLVLDEADQMLDMGFIHALRRIAPLLAKDR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT++FSATM   + +++  +L +  R++VN P    + I                +    
Sbjct: 181 QTMMFSATMPKLMGELAGTYLTDAVRVQVNPPGQAVKKINQSVHFVAQAAKTDLLIELL- 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  I+F   K     L   LEK+GF+  +IHGN  Q  R + L  FK G  ++
Sbjct: 240 --DKHRDELAIVFGRTKHGCEKLYKVLEKKGFAAASIHGNKSQGQRQRALEAFKSGKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIPDV  V+N+D+PN AENY+HRIGRT RAG  G A  LVA +++  + 
Sbjct: 298 LVATDVAARGLDIPDVRFVYNYDLPNVAENYVHRIGRTARAGADGSAVALVAPDEMIELK 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
            IEK +++ +   +G    + P  +K
Sbjct: 358 DIEKAMKETIPVASGREWEIQPGQKK 383


>gi|24374114|ref|NP_718157.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24348604|gb|AAN55601.1|AE015698_9 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 475

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 150/420 (35%), Positives = 229/420 (54%), Gaps = 7/420 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F+ LGL   +V AV + GY  PTPIQ + IP +L   +V   AQTGTGKTASFVLP +
Sbjct: 1   MPFSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +  + R +  R++IL PTRELA QV  N  +Y K   LT   + GG+    Q K+L
Sbjct: 61  HRFADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + + +LV+DEADRMLDMGFI  I NI   +P  RQ
Sbjct: 121 IEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++ +++  + +   IE++                      + + L   L
Sbjct: 181 NLLFSATLSKQVKALAKTAIPDAIEIEISR---KNAASTQIDQWLTTVDKDRKSALLSHL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++     +IF   K     L   LEK+G    A H    Q  R ++L +FK G +  +
Sbjct: 238 IKENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ + +RG+DI  +  V N+D+P+ A++YIHRIGRTGRAG  G+A + V+K+D +++ A
Sbjct: 298 VATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCA 357

Query: 360 IEKLIEKKVDWLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE+ +   ++  N +        P+  +D    + +R  +  P  +     +   YSS K
Sbjct: 358 IERRLGHIIERKNIEGFEPKKAVPISILDFVPKSASRSAHK-PNNTAAVKDQASPYSSGK 416


>gi|312081503|ref|XP_003143055.1| ATP-dependent helicase DDX48 [Loa loa]
 gi|307761780|gb|EFO21014.1| ATP-dependent helicase DDX48 [Loa loa]
          Length = 399

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 132/373 (35%), Positives = 204/373 (54%), Gaps = 5/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL  +++  +   G+ KP+ IQ + I  +++  DV   AQ+GTGKTA+F + +L 
Sbjct: 32  TFDSMGLGEELLRGIYSYGFEKPSAIQQRAIKQIVKGRDVIAQAQSGTGKTATFSIAVLQ 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+      +    LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 92  SLDISLRETQA---LILSPTRELAVQIQKVVLALGDYLNVQCHACIGGTNVGEDIRKLDY 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++LV+DEAD ML+ GF   + +I   +P   Q +
Sbjct: 149 GQHVVSGTPGRVFDMIRRRNLRTRSIKMLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVV 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 209 LLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLCDL--YD 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L++  F+V ++HG ++Q+ R  I+  F+ G  +L+++
Sbjct: 267 TLTITQAVIFCNTRRKVDWLAEKLKEANFTVSSMHGEMEQKERDAIMKEFRGGASRLLIS 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLDIP V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 327 TDVFARGLDIPQVSLVVNYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIE 386

Query: 362 KLIEKKVDWLNGD 374
           +    ++D +  +
Sbjct: 387 QYYATQIDEMPMN 399


>gi|307706894|ref|ZP_07643696.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
 gi|307617767|gb|EFN96932.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
          Length = 524

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 151/413 (36%), Positives = 239/413 (57%), Gaps = 9/413 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIRT---EEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP +RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPESRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK---IDIAQHNHARKNNPIPQKSTGFDRRK 410
           E L +K++  L    +      +K   +   + + A +      +  G D RK
Sbjct: 355 ENLTKKRMKGLKPASAEEAFQAKKHVALKKIERDFADETIRANFEKFGKDARK 407


>gi|295702900|ref|YP_003595975.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294800559|gb|ADF37625.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
          Length = 481

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 136/407 (33%), Positives = 223/407 (54%), Gaps = 12/407 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+  GLS KV  A+    Y  PT +Q K +P+ L+  DV   +QTG+GKTASF +P+  
Sbjct: 5   SFSQYGLSDKVAKALSSLQYNHPTEVQSKVLPIALEERDVVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++     +   P+ L+L PTRELAAQV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  LVNWEENK---PQALVLTPTRELAAQVKEDITNIGRFKRIKAAAVYGKSPFAKQKVELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +  L +  I  LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKETLALEKIRYLVIDEADEMLNMGFIDQVEAIIQHLPSERVTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++++S  +    K+       +   T      +  +  +++   L + + +
Sbjct: 182 LFSATLPEDIEELSRKY---MKKPVDVEIKANGLTTSTIDHSVISVGNERKFELLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++ V  L   L+  G+    IHG + Q  R +++++FK+G  + +VA
Sbjct: 239 VENPDSCIIFCRTQEQVNTLLDDLDDLGYPCDKIHGAMVQEDRFEVMNDFKKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG+ GKA T V   + + +  IE
Sbjct: 299 TDVAARGIDIDNITHVINYDLPLEKESYVHRTGRTGRAGKKGKAITFVTPYEERMLSEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           + I   +       +S  P  E++  A+     K N  P+       
Sbjct: 359 EYIGFSIP------TSTPPSKEEVQQAESAFTDKINERPEVKKDKSE 399


>gi|326203304|ref|ZP_08193169.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325986562|gb|EGD47393.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 542

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 154/432 (35%), Positives = 228/432 (52%), Gaps = 9/432 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+S  ++ A+ D G+  PT +Q K IP +L   D+  +++TG+GKTA F + ML 
Sbjct: 4   TFNDLGVSAPLLKAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVSMLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           + +        P  LIL P RELA QV  +  K  K        + G      + + L++
Sbjct: 64  MTDP---EAEGPLGLILTPARELAVQVDSDIHKMAKYLKHKTTAVYGQHNINVETQTLKK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ DH + G L+  NI  LV+DEADRMLDMGF+  +  I   +P  R TL
Sbjct: 121 GVSIVTGTPGRVFDHISHGSLVTKNIRFLVLDEADRMLDMGFLDQVVRIIKTLPKDRITL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+  +   ++QNP  IE+ + + T +TI   +                 L  
Sbjct: 181 LFSATMPPEIHNICSRYMQNPTTIEIESQTKTVDTIHQVYYRVNYNEK---NTQLNRLLI 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  ++ +IFCN K  V  +   L K+G+S  A+HG+I Q  R+  +  FK+G   ++VA
Sbjct: 238 VEKPESCMIFCNTKAAVDRVQSFLTKKGYSSQALHGDIPQSKRLNTIQQFKQGKFHILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ I  +  V N+DVPN  +NY+HRIGRTGRAG  G+AF+LV  +DI  +  IE
Sbjct: 298 TDVAARGIHIEGLSLVINYDVPNDKDNYVHRIGRTGRAGHDGRAFSLVTGDDIISLYEIE 357

Query: 362 KLIEKKVDWLN-GDLSSLNPPL-EKIDIAQHNHARKNNPIPQKSTGFD-RRKKNYSSQKS 418
           + I   V      D S+ N  L E     + N  +   P    S   D ++K +YS    
Sbjct: 358 EHIGALVPEEELPDESTFNKALVEAEQWIKTNSLKDKAPRSTSSESTDIKKKSSYSKDPQ 417

Query: 419 HIPLKESEKISK 430
             P  + +   +
Sbjct: 418 KTPRSKPDYSRR 429


>gi|188996905|ref|YP_001931156.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931972|gb|ACD66602.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 405

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 151/414 (36%), Positives = 227/414 (54%), Gaps = 16/414 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL LS + + ++ + GY KPT IQ K IP V+   D+   AQTGTGKTA+F +P++ 
Sbjct: 7   TFKDLNLSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAFGVPIVE 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            +   + +V+    LIL PTRELA QVA   ++ GKN    T+A+  G       N   +
Sbjct: 67  KVNPKQKKVQA---LILVPTRELAIQVAKEIKELGKNKKVYTLAVYGGKSISHQINFLKK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V++ TPGR+ D   RG L ++N+++ V+DEADRML+MGFI  I+ I S +P  RQ 
Sbjct: 124 GSDVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSYLPEDRQN 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+  ++E FL          P           +       K   L +  + 
Sbjct: 184 LLFSATMPKEILDLAEEFLNENYETIRVKPDEVTVEKIKQIIYRVNPRDKFKKLTE--VL 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ+  +  IIF   K     L   L ++GF+  AIHG+  Q+ R  +L NF+ G ++++V
Sbjct: 242 SQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V N+ +P  AE+YIHRIGRTGRAGR G A +++   + K +  I
Sbjct: 302 ATDVAARGLDIKGVDLVINYGLPRDAESYIHRIGRTGRAGREGTAISIMTPSEDKQLQNI 361

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +K  +  ++ +N          +K+  AQ + + +     ++S+    R++  S
Sbjct: 362 QKKTKANIEVIN------EAQEKKLSSAQKDKSSQK----ERSSRNQTRRRQRS 405


>gi|170578338|ref|XP_001894368.1| ATP-dependent helicase DDX48 [Brugia malayi]
 gi|158599081|gb|EDP36794.1| ATP-dependent helicase DDX48, putative [Brugia malayi]
          Length = 399

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 132/373 (35%), Positives = 204/373 (54%), Gaps = 5/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL  +++  +   G+ KP+ IQ + I  +++  DV   AQ+GTGKTA+F + +L 
Sbjct: 32  TFDSMGLGEELLRGIYSYGFEKPSAIQQRAIKQIVKGRDVIAQAQSGTGKTATFSIAVLQ 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+      +    LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 92  SLDISLRETQA---LILSPTRELAVQIQKVVLALGDYLNVQCHACIGGTNVGEDIRKLDY 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++LV+DEAD ML+ GF   + +I   +P   Q +
Sbjct: 149 GQHVVSGTPGRVFDMIRRRNLRTRSIKMLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVV 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 209 LLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLCDL--YD 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L++  F+V ++HG ++Q+ R  I+  F+ G  +L+++
Sbjct: 267 TLTITQAVIFCNTRRKVDWLAEKLKEANFTVSSMHGEMEQKERDAIMKEFRGGASRLLIS 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLDIP V  V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 327 TDVFARGLDIPQVSLVVNYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIE 386

Query: 362 KLIEKKVDWLNGD 374
           +    ++D +  +
Sbjct: 387 QYYATQIDEMPMN 399


>gi|254251800|ref|ZP_04945118.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
 gi|124894409|gb|EAY68289.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
          Length = 511

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 160/373 (42%), Positives = 223/373 (59%), Gaps = 8/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F   GL+  ++ A+ + GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 34  NFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q 
Sbjct: 94  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 153

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 154 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 213

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +            +   +  
Sbjct: 214 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQL 273

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +  +K  I+FCN K     L   LE+ G    AIHG+  Q  RM+ L  FK G +
Sbjct: 274 L---RERGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEV 330

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 331 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 390

Query: 357 IDAIEKLIEKKVD 369
           +  IEKLI++ ++
Sbjct: 391 LADIEKLIKRPLE 403


>gi|300781459|ref|ZP_07091313.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
           33030]
 gi|300533166|gb|EFK54227.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
           33030]
          Length = 675

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 142/391 (36%), Positives = 231/391 (59%), Gaps = 13/391 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   V+ A+   G+  P+ IQ +TIPL+++  DV G+AQTGTGKTA+F LP+L  
Sbjct: 72  FNGLGLPAPVLDAIKRVGFESPSQIQAETIPLLMEGRDVVGLAQTGTGKTAAFALPILAR 131

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLER 121
           ++      R P+ LIL PTRELA QV+D+F+ +  +      L I G   +  Q   L R
Sbjct: 132 IDTS---ARYPQALILAPTRELALQVSDSFQSFADHLGGISVLPIYGGQAYGIQLSGLRR 188

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  +G L ++N+  LV+DEAD ML+MGF   ++ I    P  +Q  
Sbjct: 189 GAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVA 248

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++S ++L +P+ + V   + T   I   ++ T  +           +  
Sbjct: 249 LFSATMPNAIRRISHDYLNDPEEVTVKAKTRTNTNITQRYLFTAHRNKLDAITRVLEVTE 308

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   I+F   K+    +   L  +GFS  AI+G+I Q+ R + +   ++G + ++VA
Sbjct: 309 FDAM---IVFVRTKQETEEIAEKLRARGFSAAAINGDIAQQQRERTVDMLRDGRLDILVA 365

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 366 TDVAARGLDVERISHVLNYDIPNDTESYVHRIGRTGRAGRTGEALLFVTPRERRMLRSIE 425

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           K+   K++ ++       P ++++++++ N 
Sbjct: 426 KVTGAKIEEMD------LPTVDEVNVSRMNK 450


>gi|261866893|ref|YP_003254815.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412225|gb|ACX81596.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 443

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 133/434 (30%), Positives = 223/434 (51%), Gaps = 7/434 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + FAD  L+P+++ A+   GY +PT IQ +TIP  ++  DV G A TGTGKTA+F+LP +
Sbjct: 5   IQFADFDLAPELLNALQKKGYQRPTAIQQETIPAAMEGGDVLGSAPTGTGKTAAFLLPAI 64

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR L+L PTRELA QVA+  ++      L++A + GG+ ++   +  
Sbjct: 65  QHLLDYPRRKPGAPRVLVLTPTRELAMQVAEQAKELACFTKLSIATITGGVAYQNHGEIF 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR+L +          +EIL+ DEADRML MGF    + I +   + +Q
Sbjct: 125 NKNQDIVVATPGRLLQYIKEENFDCRTVEILIFDEADRMLQMGFGQDAEKIAAETRWRKQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT+  +L +       N     +    S  E  +      +A   +    L    
Sbjct: 185 TLLFSATLEGDLLEDFAARTLNEPVK-IEAEPSRRERKKIQQWYYHADSHEHKFKLLARF 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+ +  GI+F  +++ V  L  +L K+G     + G + Q  R   +   K G ++++
Sbjct: 244 IEQEQVSKGIVFVRRREEVRELAENLRKRGIRSAYLEGEMAQTQRNNAIDKLKNGVVKVL 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++D++ARG+DI DV H+ NFD+P  A+ Y+HRIGRT RAG+ G A + V   D + +  
Sbjct: 304 VSTDVSARGIDIDDVSHIMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYRLLGK 363

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           I++      + L   +     P  K    +    +  +   +      R  +  + +K  
Sbjct: 364 IKRYTG---EILKARVIEGLEPRTK--APKDGEIKTVSKKQKAKKLEKREARKKADKKVK 418

Query: 420 IPLKESEKISKLQQ 433
              ++ + I K ++
Sbjct: 419 QRHQDRKNIGKRRK 432


>gi|253681284|ref|ZP_04862082.1| cold-shock deAd box protein a [Clostridium botulinum D str. 1873]
 gi|253562522|gb|EES91973.1| cold-shock deAd box protein a [Clostridium botulinum D str. 1873]
          Length = 528

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 149/392 (38%), Positives = 221/392 (56%), Gaps = 13/392 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL +S ++  A+ D G+  P+PIQ K IP +L   D+ G AQTGTGKTA+F +P L
Sbjct: 4   IKFEDLPISDEIKRAIADMGFEAPSPIQEKAIPFILSGKDIIGQAQTGTGKTAAFGIPAL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++     ++    ++L PTRELA Q      K GK       L +  G P + Q K L
Sbjct: 64  DTIDLDNKSLQ---IMVLCPTRELAIQATQEVHKLGKYKKGINVLAVYGGQPIDRQIKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  ++I TPGR++DH  R  L  +NI+++V+DEAD MLDMGF   I+ I   +P  RQ
Sbjct: 121 KRGVQIIIGTPGRVIDHIRRKTLKTDNIKMIVLDEADEMLDMGFRDDIETIIQAIPQNRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + ++S+ +  N + I          T+ +               +   L
Sbjct: 181 TILFSATMAKAIIELSKKYQNNAEFI---KVVHKQLTVPNIEQRYLEVKENNKLEVLSRL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  +IFCN KK V  +   L+ +G+    +HG++ Q  R ++++ F+ GTI+++
Sbjct: 238 IDMRNPKLSVIFCNTKKRVDEVVSQLQARGYFAEGLHGDMKQPQRDRVMNKFRNGTIEIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G AFT VA + I+ +  
Sbjct: 298 VATDVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRSGIAFTFVAGKAIRKLRD 357

Query: 360 IEKLIEKKVDWLNGDLSS------LNPPLEKI 385
           IE+  + KV       +S      +N  LEK+
Sbjct: 358 IERYTKTKVKRAEIPSASDVEEFKVNAFLEKV 389


>gi|255572963|ref|XP_002527412.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223533222|gb|EEF34978.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 505

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 133/379 (35%), Positives = 209/379 (55%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+G    V+  V  AG+V+PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP + 
Sbjct: 100 SFRDVGFPDYVLEEVTRAGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 159

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA Q+     K+G +  +    + GG+P   Q + L
Sbjct: 160 HVNAQPILAPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKNTCIYGGVPKGPQVRDL 219

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 220 QKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQ 279

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL +SAT   E+++++  FL NP ++ + +    A       V   ++  K    L +LL
Sbjct: 280 TLYWSATWPKEVEQLARQFLYNPYKVVIGSADLKANHAIRQHVDIVSENQKY-NKLVKLL 338

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +IF + KK    +   L   G+   +IHG+  Q  R  +LS FK G   +M
Sbjct: 339 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 398

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD+ DV  V N+D P   E+Y+HRIGRTGRAG  G A+T     + +    
Sbjct: 399 TATDVAARGLDVKDVKFVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTASNARFAKE 458

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +  ++E+    ++ +L+++
Sbjct: 459 LISILEEAGQKVSPELAAM 477


>gi|222086716|ref|YP_002545250.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
 gi|221724164|gb|ACM27320.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
          Length = 556

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 159/454 (35%), Positives = 246/454 (54%), Gaps = 10/454 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGLS ++V  +    +  PTPIQ + IPLVLQ  D+ G+AQTGTGKTA+F LP++ 
Sbjct: 19  DFHSLGLSKQIVDTLSQNNFATPTPIQAQAIPLVLQGRDLIGLAQTGTGKTAAFGLPIIE 78

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +L K   R      RTLIL PTREL  Q+ADN + + +   L + +++GG     Q  +L
Sbjct: 79  MLLKDAKRPDNRTVRTLILAPTRELVNQIADNLKLFVRKTALRINVVVGGASINKQQLQL 138

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+L+ TPGR+LD  +R  L +  +  LV+DEAD+MLD+GFI  ++ I+ +VP  RQ
Sbjct: 139 ERGTDILVATPGRLLDLISRRALSLGQVSYLVLDEADQMLDLGFIHDLRKISKMVPAKRQ 198

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   +  ++  +L NP ++EV+ P   A+ +E        Q  K    + +  
Sbjct: 199 TMLFSATMPKTIADLAAEYLTNPVKVEVSPPGKAADKVEQYVHFVSGQNHKTE--ILKES 256

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S +     ++F   K     L   LE  GF+  +IHGN  Q  R + L  F++G ++++
Sbjct: 257 ISANPDGRAMVFLRTKHGAEKLMKHLEHVGFAAASIHGNKSQGQRERALKGFRDGEVRVL 316

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V HV+N+D+P   + Y+HRIGRT RAGR G A    A ++ + +  
Sbjct: 317 VATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEARLLRD 376

Query: 360 IEKLIEKKVDWLNGDLSS------LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           IE+L+  ++   +G+  +                 Q     +      ++ G   R    
Sbjct: 377 IERLMGIEIAVASGEAPADRGRPARGNNRAGGRGGQGQGQGRGGAGQGRAEGRPARPARR 436

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
             ++       +    + ++  Q  +  +  FRG
Sbjct: 437 PHREGEAGEARAHNGERQERRPQRENNRNADFRG 470


>gi|239617313|ref|YP_002940635.1| DEAD/DEAH box helicase domain protein [Kosmotoga olearia TBF
           19.5.1]
 gi|239506144|gb|ACR79631.1| DEAD/DEAH box helicase domain protein [Kosmotoga olearia TBF
           19.5.1]
          Length = 524

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 142/385 (36%), Positives = 221/385 (57%), Gaps = 14/385 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+++GLS K++ ++   G+V+PTPIQ K IP++L   D+ G A TGTGKTA+F +P+L
Sbjct: 3   MNFSEMGLSRKMLNSIEKVGFVEPTPIQSKAIPVILNGRDIIGQAHTGTGKTAAFGIPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
            +L+    +V+    LIL PTRELA QVA        N      L I  G   E Q   L
Sbjct: 63  EMLDYSSKKVQ---ALILCPTRELAVQVAREIAALASNRKEIEVLAIYGGQSIERQINTL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G  V++ TPGRI+DH  R  L +++ + +V+DEAD ML+MGF+  I+ I S V   RQ
Sbjct: 120 KKGIQVVVGTPGRIMDHMRRKTLKLDDTKFVVLDEADEMLNMGFLEDIRYILSHVGKERQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +FSATM   +  +++ F + P+ I      +   T+             +       L
Sbjct: 180 ITMFSATMPKAIIALAQEFQKEPELI---KVINRELTVSTVEQYYLEIGESRKFDALSKL 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  ++FCN KK V  L   L+ +G+ V  +HG++ Q  R +++++F+  +I+++
Sbjct: 237 IEYYNPQLSLVFCNTKKKVDELVPMLQAKGYLVDGLHGDMSQSLRNRVMNSFRNKSIKVL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ D+  VFN+D+P   E Y+HRIGRTGRAG+ GKAF+      +  +  
Sbjct: 297 VATDVAARGIDVDDIEAVFNYDIPQDEEYYVHRIGRTGRAGKTGKAFSFAYGRSLHRLRE 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           I++  + K+        SLN P EK
Sbjct: 357 IQRYTKIKI-------KSLNVPSEK 374


>gi|109899589|ref|YP_662844.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas atlantica T6c]
 gi|109701870|gb|ABG41790.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 412

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 130/404 (32%), Positives = 205/404 (50%), Gaps = 11/404 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L  ++  AV D GY +PT IQ   IP  ++  D+   A TGTGKTA+F+LP+   
Sbjct: 2   FEQLELDDELCRAVADLGYSEPTSIQQLVIPAAMEGKDILASAPTGTGKTAAFLLPVCQF 61

Query: 63  LEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L     R     R LIL PTRELA QV +   +  +  ++   ++ GGI +       E+
Sbjct: 62  LLDYPRRHPGSTRILILTPTRELAQQVYNQALELSRYTDIVCGVITGGINYGTDRDTFEK 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+L+ TPGR+ +H  +      +IE L++DEADRMLDMGF   +  I++   + +Q++
Sbjct: 122 NLDILVATPGRLFEHIEQESFDCRDIECLILDEADRMLDMGFSSIVNQISAEARWRKQSM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+      +S               +S+ +         +     K          
Sbjct: 182 LFSATLEGT--GISRFAKDILNDPVELEAASSRKEQGKIHQWLHIADDAKHKYALLKHIL 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +++ ++F   +  +  L   LE+ GF+VC + G + Q  R   ++ F+ G +++++A
Sbjct: 240 THQVESAVVFVKTRDRLNELKQILERDGFTVCWLQGEMPQDKRNLSMAKFRSGEVKILIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+  + HV N+D+P  A+ Y+HRIGRTGRAG  G A +LV   DI  +  IE
Sbjct: 300 TDVAARGIDVESISHVINYDMPRTADVYVHRIGRTGRAGNKGTAISLVEAHDIGIVPKIE 359

Query: 362 KLIEKK-----VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           +  E+      +D L        PP ++      N A+K   IP
Sbjct: 360 RYTEQPLKRRVIDELRPKNKEAKPPAKR---KISNKAKKAAGIP 400


>gi|307326471|ref|ZP_07605666.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306887879|gb|EFN18870.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 559

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 144/366 (39%), Positives = 210/366 (57%), Gaps = 1/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P+++ A+   GY +PTPIQ + IP +L   D+ G A TGTGKTA+F LP+L  
Sbjct: 12  FADLRLRPELLRALAGLGYEEPTPIQREAIPPLLDGRDLLGQAATGTGKTAAFALPVLQR 71

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + +       P  L+L PTRELA Q ++   +YG++    V  + GG P   Q + LERG
Sbjct: 72  ISQDGGGAE-PSALVLVPTRELAMQASEAIHRYGRDLGTRVLPVYGGQPIGRQLRALERG 130

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR LDH  RG L ++++E LV+DEAD MLDMGF   I  I    P  RQT+L
Sbjct: 131 VDVVVATPGRALDHIGRGTLRLDSLETLVLDEADEMLDMGFAEDIDAILEGTPADRQTVL 190

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +  ++   L+ P RI++               + Y     +       +   
Sbjct: 191 FSATMPARIDAMARRHLRGPVRIQIEREKPAPGETPKVRQSAYVVARAQKPAALGRVLDV 250

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           ++ +  I+FC  +  V  L  +L  +G+   A+HG + Q  R +++   + GT  L+VA+
Sbjct: 251 ESPEATIVFCRTRDQVDQLTETLNGRGYRAEALHGGMGQEQRDRVMGRVRGGTADLLVAT 310

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  + HV N+DVP+  E+Y+HRIGR GRAGR G A TL    + + + AIE+
Sbjct: 311 DVAARGLDIEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKAIER 370

Query: 363 LIEKKV 368
              +++
Sbjct: 371 TTRRQI 376


>gi|308071529|ref|YP_003873134.1| ATP-dependent RNA helicase dbpA [Paenibacillus polymyxa E681]
 gi|305860808|gb|ADM72596.1| ATP-dependent RNA helicase dbpA [Paenibacillus polymyxa E681]
          Length = 481

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 139/393 (35%), Positives = 223/393 (56%), Gaps = 12/393 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS ++V A+   GY  PT IQ + IP+ L++ D+   +QTG+GKTA++ +P+  +
Sbjct: 6   FTDYALSEEIVRALSSLGYETPTEIQTEVIPVALEKKDLVAKSQTGSGKTAAYGIPICEL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    +   P+ LIL PTRELA QV ++    G+   +    L G  PF  Q  +L++ 
Sbjct: 66  VDWNENK---PQALILTPTRELALQVTEDITNIGRFKRIKATPLYGKHPFHIQKAELKQR 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V + TPGR+LDH  RG L ++ I  LVIDEAD ML+MGFI  +Q+I   +P  R T+L
Sbjct: 123 THVAVGTPGRVLDHIERGTLSLDRIAYLVIDEADEMLNMGFIEQVQSIIQALPSDRVTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT  +++  +S  ++ +P +IE+     T  TI+H  +              Q L   
Sbjct: 183 FSATFPEDVATLSRKYMNDPVKIEIKATGITTATIDHSLIQVKESDKLAL---LQDLLIV 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV  L  +L    +    IHG ++Q  R ++++ F+ G  + ++A+
Sbjct: 240 ENPDSCIIFCRTQENVDTLFRALADLEYPCDRIHGGMEQDERFEVMNAFRRGQFRYLIAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG+ GKA +L+  +D + +  IE 
Sbjct: 300 DVAARGIDITNITHVINYDIPLEKESYVHRTGRTGRAGKTGKAISLITPKDGRRLADIEA 359

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
            I   +  +        P  E +D+ + +  +K
Sbjct: 360 YIGFAIPQVKA------PSEEAVDLRREDFEQK 386


>gi|167737747|ref|ZP_02410521.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           14]
          Length = 409

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 166/396 (41%), Positives = 232/396 (58%), Gaps = 18/396 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+ +++ A+ + GY  PTPIQ K IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   ++ A T+            +   +  
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQAIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                  ++K  I+FCN K     L   +E+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 ---IRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           +  IEKLI++ +      L +L      +D+ +H H
Sbjct: 369 LADIEKLIKRTLS-----LETLA-----LDLPRHRH 394


>gi|310767076|gb|ADP12026.1| ATP-dependent RNA helicase RhlE [Erwinia sp. Ejp617]
          Length = 469

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 158/390 (40%), Positives = 239/390 (61%), Gaps = 6/390 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                        R  R LIL PTRELAAQV +N + Y K  ++   ++ GG+    Q  
Sbjct: 61  QLLSSHNPHPKGRRPVRALILTPTRELAAQVGENVQDYSKYLDMRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  L ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++E  L NP+++EV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDEIKILAEKLLHNPEQVEVARRNTASEQV---TQHVHLVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + LS+FK+G I+
Sbjct: 238 LLIGRGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKDGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGIDIEELPHVVNYELPNVPEDYVHRIGRTGRAAAVGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
             IE+++++++  +  D    +P ++   I
Sbjct: 358 RDIERVLKREIPRMAIDGFEPDPSIKAEPI 387


>gi|269468408|gb|EEZ80073.1| hypothetical protein Sup05_1317 [uncultured SUP05 cluster
           bacterium]
          Length = 614

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 154/397 (38%), Positives = 233/397 (58%), Gaps = 7/397 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D GLS  ++  +   GY  P+PIQ + I  +L   D+ G AQTGTGKTA+F LP+L 
Sbjct: 13  KFSDFGLSDSILKVLDSIGYETPSPIQEQCITHLLNGEDIIGQAQTGTGKTAAFALPLLD 72

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++     +  P+ LIL PTRELA QV++  + Y +       L I G   ++ Q + L+
Sbjct: 73  NIDLS---LNAPQLLILAPTRELAIQVSEAVQVYARGLKGFHVLPIYGGQSYDIQLRPLK 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG   ++ TPGR++DH  +G L ++ ++  V+DEAD ML MGFI  I+ +   +P  RQ 
Sbjct: 130 RGVHCVVGTPGRVMDHIKKGTLKLDQLKSFVLDEADEMLKMGFIDDIKWVMERIPEQRQI 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++V+E FL NPK ++V T + TA TI   +        K  AL + L  
Sbjct: 190 ALFSATMPNIIKRVAEKFLNNPKIVKVKTKTETAPTIGQKYCLVGGLSQKLDALTRILEV 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      IIF   K   + L   L  +GFS  AI+G+I Q  R KI++ FK+G I ++V
Sbjct: 250 TEFDAM--IIFARTKTLTIELSEKLSARGFSAEAINGDIQQSQREKIINKFKKGGIDILV 307

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+P + HV N+D+P  AE Y+HRIGRTGRAGR G+A   V+  + + ++ I
Sbjct: 308 ATDVAARGLDVPRISHVVNYDIPQDAETYVHRIGRTGRAGREGEAILFVSHRERRMLNNI 367

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           E++  +K++ L    + +    ++ID  +       N
Sbjct: 368 ERVTRQKIEPLELPTAKIINE-KRIDTFKKRITETIN 403


>gi|229520951|ref|ZP_04410373.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TM 11079-80]
 gi|229342184|gb|EEO07180.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TM 11079-80]
          Length = 423

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 206/371 (55%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L P ++ A+ + G+ +PT +Q + IP  L   DV   A TGTGKTA+FV+P L 
Sbjct: 4   TFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L     R   P  + IL PTRELA QVA+  +   KN  L +  + GG+ ++     L 
Sbjct: 64  YLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L++ +  +     IE L++DEADRMLDMGF P +  +++   + +QT
Sbjct: 124 TTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     ++  + + L++P  ++  +P    + I   +        K         
Sbjct: 184 LLFSATLEGRGVEGFTADLLKDPAHVDAESPRRERKKISQWYHRADDMPHKVE---LLKK 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F   ++ + +L   LEK       I G + Q  R   +S F+EG + ++
Sbjct: 241 ILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PD+ HV NFD+P  A+ Y+HRIGRTGRAG+ G A +LV   D   +  
Sbjct: 301 LATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMAR 360

Query: 360 IEKLIEKKVDW 370
           +E+ I+++V  
Sbjct: 361 VERYIKEEVKE 371


>gi|319957469|ref|YP_004168732.1| dead/deah box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
 gi|319419873|gb|ADV46983.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
          Length = 477

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 139/445 (31%), Positives = 232/445 (52%), Gaps = 16/445 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D    P++  A+ +AG+ +P+P+Q + IPL+L+  D+   A TGTGKTA+F LP+L
Sbjct: 1   MTFEDFNFKPQLAQAIKEAGFREPSPVQKEAIPLILEGRDLIAQAHTGTGKTAAFGLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L            L++ PTRELA QV+D   ++GK  ++  A + GG  +  Q + ++
Sbjct: 61  QQLSCD----GSVEALVIVPTRELATQVSDEIFRFGKALSIRTATVYGGSSYTRQIQHVQ 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             + V+      I     +   +  +   +++DEAD MLDMGF+  I+ I + +P +RQT
Sbjct: 117 SASVVVATPGRLIDLL--QSGKISLSPRFVILDEADEMLDMGFLDDIKEIFTHLPESRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E++ +++  L++P  + +   + T E I   F            +      
Sbjct: 175 LLFSATMSKEIRTLAQRILKDPATVSITGGNVTNEKIRQLFYVVDEPERDDALVRLL--- 231

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIFC  KK V  L   L  QG+    +HG++DQR R   +  FK G  ++++
Sbjct: 232 DYKNPDKSIIFCRMKKEVDRLRDFLAAQGYDAKGLHGDMDQRQREATIRAFKNGQAEILI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HVFN+ +P   E+Y+HRIGRTGRAGR G A ++V+  + + +  I
Sbjct: 292 ATDVAARGLDVNDVSHVFNYHLPFDPESYVHRIGRTGRAGREGTAISIVSPHEFRSLQRI 351

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           +K +   ++      S + P +E++   + +   +     +  T      +    +    
Sbjct: 352 QKSVGSSIE------SRIIPRIEEVRAQRSDALIQRIEKQEVDTASYELIEELKEEYDLT 405

Query: 421 PLKESEKISKLQQDIQENDADSLGF 445
            L   + +S L+ + +   AD +G 
Sbjct: 406 TL-ACKLLSMLRDEEEVRGADRIGK 429


>gi|146419877|ref|XP_001485898.1| hypothetical protein PGUG_01569 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 397

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P+++  + + G+  P+ IQ + I  +++  D    AQ+GTGKTA+F + +L+
Sbjct: 25  TFESMNLKPELLKGIYNYGFEAPSAIQSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILS 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    + +  + L+L PTRELA Q+ +  E  G   N+     IGG       KKL++
Sbjct: 85  LIDT---KSKDCQALVLSPTRELAQQIENVIEHLGDYMNVRSHACIGGTQVGEDVKKLQQ 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+LD   R  ++  ++++LV+DEAD +L  GF   I  I   +P   Q +
Sbjct: 142 GQHIISGTPGRVLDMIKRRNIMPRHVKMLVLDEADELLTKGFKEQIYEIYKTLPAGAQVV 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+T E+ +++  F  +P +I V     T + I+  ++    +  K   L       
Sbjct: 202 VVSATLTPEVLEMTNKFTSDPVKILVKRDDVTLKGIKQYYIQCEKEDWKFDTLCDL--YD 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K  V  L   + K  F+V A+HG++ Q  R  I+  F+ G+ +++++
Sbjct: 260 NLTITQAVIFCNTKAKVNWLAGQMRKSNFTVAAMHGDMKQEDRDSIMKEFRSGSTRVLIS 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENY+HRIGR+GR GR G A  L+  +D   +  ++
Sbjct: 320 TDVWARGIDVQQVSLVINYDLPLDKENYVHRIGRSGRFGRKGTAINLLTSQDKDELKLLQ 379

Query: 362 KLIEKKVDWLNGDLSSL 378
                K+  +  DLS +
Sbjct: 380 HYYSTKIREVPADLSKI 396


>gi|146307171|ref|YP_001187636.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145575372|gb|ABP84904.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 560

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 143/371 (38%), Positives = 224/371 (60%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL P ++ A+   GY +P+PIQ + IP++L  HD+ G AQTGTGKTA+F LP+L+ 
Sbjct: 8   FAALGLHPNILAALTAVGYEEPSPIQSQAIPVILAGHDMIGQAQTGTGKTAAFALPLLSK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++  +     P+ LIL PTRELA QVA  FE Y K       + +  G P   Q K L  
Sbjct: 68  IDPAKRE---PQVLILAPTRELALQVATAFETYSKQMPGVNVVAVYGGAPMGPQLKALRM 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  R   +++ I+ LV+DEAD ML +GF+  ++ I   +P +RQ++
Sbjct: 125 GAQIIVATPGRLVDHLRRDDKVLSTIQHLVLDEADEMLKLGFMDDLEIIFEAMPESRQSV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L+ P+ I++   + T   IE   +  +A       L       
Sbjct: 185 LFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVSRIEQAHLMIHADQKTNAVLRLL---E 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I F   K+  ++L  +LE +GF   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 242 VEDFDALIAFVRTKQATLDLASALEAKGFKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKVDWLN 372
           ++  +KV  + 
Sbjct: 362 RVTGQKVGEVK 372


>gi|242814538|ref|XP_002486388.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218714727|gb|EED14150.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 502

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 129/422 (30%), Positives = 203/422 (48%), Gaps = 12/422 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+F++P L
Sbjct: 45  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFIIPTL 104

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     + +    LIL PTRELA Q +   +  GK+  + V +  GG        +L 
Sbjct: 105 ERINPKSTKTQ---ALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRLN 161

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 162 DTVHIIVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 221

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F     R           T+            K+       L 
Sbjct: 222 MLFSATFPMIVKS----FKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 277

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 278 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLV 337

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 338 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKI 397

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST-GFDRRKKNYSSQKSH 419
           E+ +  ++  +     S++  L   D +     R     PQ  T G  R +K    Q +H
Sbjct: 398 EQELGTEIQPIP---QSIDKKLYVYD-SPDTIPRPIASGPQPGTEGQQRSEKQGYRQGNH 453

Query: 420 IP 421
            P
Sbjct: 454 HP 455


>gi|197123442|ref|YP_002135393.1| DEAD/DEAH box helicase [Anaeromyxobacter sp. K]
 gi|196173291|gb|ACG74264.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp. K]
          Length = 478

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 146/408 (35%), Positives = 225/408 (55%), Gaps = 15/408 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL LS K + A+  AG+  PTPIQ + IP  L   DV G A TGTGKTA+F+LP++ 
Sbjct: 8   TFADLNLSEKTLQALERAGFEHPTPIQAQAIPPALGGRDVIGAAATGTGKTAAFLLPIIE 67

Query: 62  ILEKGRARVRM--------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
            L  G  + R         PR L+L PTRELA Q+A   E++G+  ++  AL+IGG+   
Sbjct: 68  RLAGGAPKDRPAAAHGKPGPRALVLAPTRELAVQIAGELERFGRGRHVRGALVIGGVGMG 127

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           AQ+  L     + + TPGR++DH  +G   ++ +E+LV+DEADRMLDMGF P ++ I + 
Sbjct: 128 AQSAALRDHEVI-VATPGRLVDHLQQGTARLDGLEVLVLDEADRMLDMGFAPQLKRILAR 186

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           VP  RQTLLFSATM  E+      F +   R  V    + + T+            ++  
Sbjct: 187 VPKVRQTLLFSATMAGEVAD----FARAHLRDPVRVEVARSGTLAERAEQRVFLPEQREK 242

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L   L   ++   + ++F   K+    +  +L++ G  V  IH +  Q  R   L  F++
Sbjct: 243 LPLLLALLEEDDLSTLVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFRD 302

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G  +++VA+D+AARG+D+ ++GHV NFD+P+  E+Y+HR+GRT R    G+A    + E+
Sbjct: 303 GQYRVLVATDIAARGIDVAEIGHVVNFDLPHVPEDYVHRVGRTARMAASGRASAFASPEE 362

Query: 354 IKHIDAIEKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           +  +  IE+L    +    +  + ++    L++ D AQ N      P 
Sbjct: 363 LDLLRDIERLTRAPIPRAEVPREHATFQAELQRADAAQANPGPGARPA 410


>gi|91206538|sp|Q2U070|DBP2_ASPOR RecName: Full=ATP-dependent RNA helicase dbp2
 gi|83774922|dbj|BAE65045.1| unnamed protein product [Aspergillus oryzae]
          Length = 554

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 128/380 (33%), Positives = 208/380 (54%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ +PT IQ +  P+ L   DV GIA+TG+GKT S+ LP + 
Sbjct: 131 TFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIV 190

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 191 HINAQPLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQIRDL 250

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 251 SRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQ 310

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T ++SAT   E+++++ +FL +  ++ + +   +A       V   + + K+  +++ L 
Sbjct: 311 TCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLE 370

Query: 240 QSQDTMKNGIIFCNQKKN-VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   N  +     K     +   L + G+   +IHG+  Q+ R  +L+ FK G   +
Sbjct: 371 KIMENRGNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPI 430

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A T    ++ K   
Sbjct: 431 MVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQAR 490

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    ++  L+ +
Sbjct: 491 DLVTILTEAKQQIDPRLAEM 510


>gi|326911972|ref|XP_003202329.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like
           [Meleagris gallopavo]
          Length = 645

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 150/451 (33%), Positives = 228/451 (50%), Gaps = 18/451 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+ A++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 82  FHQCSFPQYVMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 141

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 142 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 201

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 202 RGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 261

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FLQ+  +I V     +A       V    +  K   L+Q + +
Sbjct: 262 LMWSATWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 321

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 322 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 381

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    
Sbjct: 382 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 441

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK------NNPIPQKSTGFDRRKKNY 413
           + K++E+    +N  L  L              +R       NNP        DRR +  
Sbjct: 442 LIKVLEEANQAINPKLMQLVDHRGGGGGGGGGRSRYRTSSSVNNPNLMYQEECDRRLRG- 500

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLG 444
                   +KE  + S   +D +  D+ + G
Sbjct: 501 --------VKEGRRDSGGFRDRERGDSYANG 523


>gi|259909026|ref|YP_002649382.1| ATP-dependent RNA helicase RhlE [Erwinia pyrifoliae Ep1/96]
 gi|224964648|emb|CAX56162.1| Putative ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
 gi|283479042|emb|CAY74958.1| putative ATP-dependent RNA helicase rhlE [Erwinia pyrifoliae DSM
           12163]
          Length = 471

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 158/390 (40%), Positives = 239/390 (61%), Gaps = 6/390 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                        R  R LIL PTRELAAQV +N + Y K  ++   ++ GG+    Q  
Sbjct: 61  QLLSSHNPHPKGRRPVRALILTPTRELAAQVGENVQDYSKYLDMRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  L ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++E  L NP+++EV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTASEQV---TQHVHLVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + LS+FK+G I+
Sbjct: 238 LLIGRGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKDGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGIDIEELPHVVNYELPNVPEDYVHRIGRTGRAAAVGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
             IE+++++++  +  D    +P ++   I
Sbjct: 358 RDIERVLKREIPRMAIDGFEPDPSIKAEPI 387


>gi|218887215|ref|YP_002436536.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758169|gb|ACL09068.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 531

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 138/369 (37%), Positives = 217/369 (58%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L LS +++ A+ + G+ + +PIQ   IP +L+  DV G AQTGTGKTA+F +P+L
Sbjct: 4   LRFEELSLSKEILKAIEEMGFEETSPIQALAIPHILEGRDVIGQAQTGTGKTAAFGIPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++    R +  + +IL PTRELA QVA+   +          L +  G P + Q K L
Sbjct: 64  ERIDP---REKDIQGIILCPTRELAIQVAEELTQLASRKRGLYVLPVYGGQPIDRQFKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA V++ TPGR++DH  RG + ++ + + V+DEAD MLDMGF   I++I   VP   Q
Sbjct: 121 RRGAQVVVGTPGRVMDHMERGTINLSTVRMAVLDEADEMLDMGFRDDIEHILGQVPGEAQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+ FSATM   +  +++ FL+ P+ ++V     T  +IE  +         +        
Sbjct: 181 TVFFSATMPPAILDMAQRFLKTPEFLKVTQKQVTVPSIEQIYYEVRPFQKLEALCRVL-- 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  I+FC+ K+ V  L   L+ +G+    +HGN++Q  R ++++ F+   I+++
Sbjct: 239 -DLYNPKRAIVFCSTKRGVDELTQHLQGRGYQADGLHGNLNQSQRDRVMARFRSNGIEIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  V N+D+PN  E+Y+HRIGRTGRAGR G+AFT V+  D   +  
Sbjct: 298 VATDVAARGIDVDDVEAVVNYDIPNAVEHYVHRIGRTGRAGRSGRAFTFVSGRDFYKLRD 357

Query: 360 IEKLIEKKV 368
           I+K  +  +
Sbjct: 358 IKKFTKAHI 366


>gi|148984940|ref|ZP_01818193.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP3-BS71]
 gi|307127794|ref|YP_003879825.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
 gi|147922962|gb|EDK74078.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP3-BS71]
 gi|301800413|emb|CBW33045.1| DEAD box helicase family protein [Streptococcus pneumoniae OXC141]
 gi|306484856|gb|ADM91725.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
          Length = 524

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 145/373 (38%), Positives = 224/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIRT---EEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|332345119|gb|AEE58453.1| cold-shock DEAD box protein A [Escherichia coli UMNK88]
          Length = 629

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 222/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++ +F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRHFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|119946809|ref|YP_944489.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119865413|gb|ABM04890.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 581

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 141/372 (37%), Positives = 223/372 (59%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L L   +   V + GY  P+PIQ + IPL+L+  DV G+AQTGTGKTA+F LP+L 
Sbjct: 15  NFTELNLPEALTKVVSELGYETPSPIQAQCIPLLLEGKDVLGLAQTGTGKTAAFALPLLA 74

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     +  P+ L L PTRELA QVA+ F+ Y ++      L I  G  ++ Q K+L+
Sbjct: 75  NIDIN---LNQPQVLALAPTRELAIQVAEAFQTYARHLRGFHVLPIYGGQSYDIQFKQLK 131

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGRI+DH  R  L ++NI+ L++DEAD ML MGFI  ++ I   +P  RQT
Sbjct: 132 RGPQVVVGTPGRIMDHLKRKTLDLSNIKTLILDEADEMLRMGFIDDVETIMKEMPDKRQT 191

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM D+++++++ ++ +P  +++ + +ST E IE                    + 
Sbjct: 192 ALFSATMPDQIKRITKRYMNSPTEVKIQSKTSTVENIEQKCWIVRGVNK---LDALTRML 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   V L   LE +G+   A++G+++Q+ R + ++  K G + ++V
Sbjct: 249 ETEEYDGVIIFARTKTATVELAERLEARGYRSAALNGDMNQQVRERTIARLKSGGLDILV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P   E+Y+HRIGRTGRAGR GKA    A  + + + AI
Sbjct: 309 ATDVAARGLDVERLSLVVNYDIPTDTESYVHRIGRTGRAGRKGKAILFAAPRERRLLKAI 368

Query: 361 EKLIEKKVDWLN 372
           E+   +++  ++
Sbjct: 369 ERATRQEITIMD 380


>gi|116511209|ref|YP_808425.1| superfamily II DNA/RNA helicase [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116106863|gb|ABJ72003.1| Superfamily II DNA and RNA helicase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 551

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 151/384 (39%), Positives = 231/384 (60%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  +V  + + GY +PTPIQ +TI L L+  DV G AQTGTGKTA+F LP +
Sbjct: 1   MKFSELGLSEGIVKTLTEIGYEQPTPIQEETIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +    A     + L++ PTRELA Q  +   ++GK+  L V  + GG   E Q K L+
Sbjct: 61  EKI---NAENPAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIKGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR++D   R  + ++ +E L++DEAD ML+MGF+  I  I    P  RQT
Sbjct: 118 AGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  +++K+   F++NP+ I++     TA+ I+  FV T          +   L 
Sbjct: 178 LLFSATMPADIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKTKEFEK---FDVLTRLL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +G+    +HG++DQ  R+ +L +FK G I ++V
Sbjct: 235 DVERPQLAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++ AI
Sbjct: 295 ATDVAARGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           EKL  K       ++  L PP ++
Sbjct: 355 EKLTNK-------EMKGLKPPTKE 371


>gi|241760372|ref|ZP_04758467.1| dead/deah box helicase [Neisseria flavescens SK114]
 gi|241319250|gb|EER55728.1| dead/deah box helicase [Neisseria flavescens SK114]
          Length = 487

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 162/433 (37%), Positives = 252/433 (58%), Gaps = 11/433 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F+ LGL  ++V A+ D GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP 
Sbjct: 25  MNPFSSLGLGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 84

Query: 60  LTILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           L +L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+  + 
Sbjct: 85  LELLKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDK 144

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++
Sbjct: 145 QTADLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQML 204

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A  A   +    
Sbjct: 205 PKQRQTLLFSATFSPPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALKKRSL-- 262

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             + L     M   I+FC  K++V  +   L ++  +  +IHG+  Q+SR++ L+ FKEG
Sbjct: 263 -LERLIVDLHMNQVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEG 321

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           T++++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ K + 
Sbjct: 322 TLRVLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQ 381

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           K  +AI++L    ++     +    P     D      A+       +S   DR K+N  
Sbjct: 382 KMFEAIKELTGSDLNV--ERIEGFEPHWWDNDNQNEAEAQPVQHNDSRSRRDDRNKRNEY 439

Query: 415 SQKSHIPLKESEK 427
           + KS    K++E+
Sbjct: 440 ANKSDKNSKKAEE 452


>gi|315443280|ref|YP_004076159.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
 gi|315261583|gb|ADT98324.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
          Length = 561

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 148/384 (38%), Positives = 226/384 (58%), Gaps = 8/384 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL + P V+ AV D GY  P+PIQ  TIP +L+  DV G+AQTGTGKTA+F +P+L
Sbjct: 13  LTFADLQIHPAVLKAVADVGYESPSPIQAATIPAMLEGSDVVGLAQTGTGKTAAFAIPIL 72

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + ++      R  + L+L PTRELA QVA+ F +YG    + V  + GG  +  Q   L+
Sbjct: 73  SKIDT---ESRNTQALVLAPTRELALQVAEAFGRYGAQLRVNVLPIYGGSSYVPQLAGLK 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  +G L +++++ LV+DEAD ML MGF   ++ I +  P  +Q 
Sbjct: 130 RGAQVVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQV 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++K++  +L +P  + V + + TAE I   +                  +
Sbjct: 190 ALFSATMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYFLVSYPRKMDALTRLLETE 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M   +      + V     +   +GF+  AI+G+I Q  R + ++  K+GTI ++V
Sbjct: 250 QGDAMIVFVRTKQATEEVAEKLRA---RGFAASAINGDIPQAVRERTITQLKDGTIDILV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV NFD+P+  E+Y+HRIGRTGRAGR G A   V   +   + AI
Sbjct: 307 ATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLGAI 366

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E++  +K+  +  +L S++   EK
Sbjct: 367 ERVTRQKL--VESELPSVDDVNEK 388


>gi|307702062|ref|ZP_07639069.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261]
 gi|307616549|gb|EFN95739.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261]
          Length = 521

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 146/373 (39%), Positives = 225/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIRT---EEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|264677685|ref|YP_003277591.1| hypothetical protein CtCNB1_1549 [Comamonas testosteroni CNB-2]
 gi|262208197|gb|ACY32295.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 616

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 168/480 (35%), Positives = 266/480 (55%), Gaps = 37/480 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AV + GY  PTPIQ + IPLVL  HD+   AQTGTGKTA+F LPML
Sbjct: 4   MTFEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPML 63

Query: 61  TILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L  G A          RTL+L PTRELAAQV +N   Y K  ++T  ++ GG+  + Q
Sbjct: 64  QRLASGTAPKNKFGGKGIRTLVLTPTRELAAQVEENLRGYAKYLDITSTVIFGGVGMKPQ 123

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             ++E+G DVL+ TPGR+LD   +G + ++ +E+L++DEADRMLDMGFI  ++ + +LVP
Sbjct: 124 IARIEKGVDVLVATPGRLLDLAGQGFMDLSTVEMLILDEADRMLDMGFIHDVKKVLALVP 183

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE+++++   L+NP+ I+V   ++T + I+           K+    
Sbjct: 184 KDKQSLLFSATFSDEIRELANGLLRNPQSIQVTPRNTTVQRIKQVIHPVGRGKKKQV--- 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              +  ++     ++F   K    N+   L K G S  A+HGN  Q +R + L  FK G 
Sbjct: 241 LLHIIQENNWSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGE 300

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VA+D+AARG+DI ++ +V N+++PN +E+Y+HRIGRTGRAGR G A +LV  ++  
Sbjct: 301 LRALVATDIAARGIDIDELPNVVNYEIPNISEDYVHRIGRTGRAGREGNAVSLVCMDEEG 360

Query: 356 HIDAIEKLIEKKVDWLN--------GDLSSL-------------NPPLEKIDIAQHNHAR 394
            +  IE+  ++++            G+++                PP   +  A    AR
Sbjct: 361 FMMDIERFTKQEIPVQPIEGFGPEEGEIAEPIAMGRQTLWGGAGKPPSRDVMQAAAKAAR 420

Query: 395 -------KNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
                  ++N  P    G  RR     +Q+     +  ++ ++  +    N  +S   +G
Sbjct: 421 QEMMERIRSNKTPNGGRG-GRRPAAADAQQGEAEGEAQQRPARQHKPRSNNRVNSQRSQG 479


>gi|259485547|tpe|CBF82660.1| TPA: ATP-dependent RNA helicase (Eurofung) [Aspergillus nidulans
           FGSC A4]
          Length = 498

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 130/429 (30%), Positives = 205/429 (47%), Gaps = 17/429 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 39  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 98

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     + +    LIL PTRELA Q +   +  GK+  + V +  GG        +L 
Sbjct: 99  ERINPKSTKTQA---LILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRLN 155

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 156 DAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 215

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F     R           T+            K+       L 
Sbjct: 216 MLFSATFPMIVKS----FKDRHMRNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 271

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q+ R ++  +F+ G  + +V
Sbjct: 272 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLV 331

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 332 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKI 391

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF------DRRKKNYS 414
           E+ +  ++  +     +++  L   D         +NP PQ+S G         R+ N+ 
Sbjct: 392 EQELGTEIQPIP---QNIDKKLYVYDSPDTIPRPISNP-PQQSQGATAASNPSDRRHNHH 447

Query: 415 SQKSHIPLK 423
           +   H   K
Sbjct: 448 TNGGHYQSK 456


>gi|224083077|ref|XP_002306942.1| predicted protein [Populus trichocarpa]
 gi|222856391|gb|EEE93938.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 142/455 (31%), Positives = 219/455 (48%), Gaps = 22/455 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  ++ A    GY KPTPIQ   IPL L   D+CG A TG+GKTA+F LP L 
Sbjct: 137 SFMELNLSRPLLRACEALGYTKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 196

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     R+   R LIL PTRELA QV    EK  +  ++   L++GG+  + Q   L  
Sbjct: 197 RLLFRPKRILAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKVQEASLRS 256

Query: 122 GADVLICTP-GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D+++ TP   I    N   + ++++ +L++DEADR+L++GF   I  +  L P  RQT
Sbjct: 257 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFNAEIHELVRLCPKRRQT 316

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+E+  + +  L  P R+  +  +     +    +            +   L 
Sbjct: 317 MLFSATMTEEVDMLIKLSLTKPLRLSADPSAKRPAALTEEVLRLRRMREVNQEAVLLALC 376

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+      IIF   K+    L       GF    +HGN+ Q  R+  L  F++  +  ++
Sbjct: 377 SKTFTSKAIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQAQRLDALELFRKQEVDFLI 436

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V N+  P    +YIHR+GRT RAGR G A T V   D   + AI
Sbjct: 437 ATDVAARGLDIIGVQTVINYACPRDLTSYIHRVGRTARAGREGYAVTFVTDNDRSLLKAI 496

Query: 361 EKLIEKK-----------------VDWLNGDLSSLNPPLEK---IDIAQHNHARKNNPIP 400
            K    K                 ++ +   ++ +     +   I  A+    +  N I 
Sbjct: 497 AKRAGSKLRSRIVAEQSIIKWSQMIENMENQVADVLQQEREERAIRKAEMEATKAENMIA 556

Query: 401 QKSTGFDRRKKN-YSSQKSHIPLKESEKISKLQQD 434
            K   F R K+  + +++  +   ++ K S ++++
Sbjct: 557 HKDEIFSRPKRTWFVTEREKMLAAKAAKQSSVEKE 591


>gi|192361806|ref|YP_001982445.1| ATP-dependent RNA helicase DeaD [Cellvibrio japonicus Ueda107]
 gi|190687971|gb|ACE85649.1| ATP-dependent RNA helicase DeaD [Cellvibrio japonicus Ueda107]
          Length = 625

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 152/371 (40%), Positives = 224/371 (60%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL LS  V+ A+   GY  P+PIQ   IP++L   D+ G+AQTGTGKTA+F LP+L+ 
Sbjct: 31  FADLALSAPVLKAIQAVGYEVPSPIQAAAIPILLDGGDILGMAQTGTGKTAAFALPLLSK 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+  +     P+ L+L PTRELA QVA+ F+KY  +      L I  G    +Q ++L+R
Sbjct: 91  LDLSQNE---PQILVLAPTRELAIQVAEAFQKYAADMPGFHVLPIYGGQDMTSQLRQLKR 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L +NN++ LV+DEAD ML MGFI  ++ I    P TRQT 
Sbjct: 148 GVHVVVGTPGRVMDHLRRGSLNLNNLKSLVLDEADEMLRMGFIDDVEWILEHTPETRQTA 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++KV++N+L++ K I++ +   T + IE  +                 ++ 
Sbjct: 208 LFSATMPREIRKVADNYLRDAKEIKIASTQQTGDNIEQVYWMVSGTNKLDALTRILEVEP 267

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   IIF   K   V L   LE +G+S   ++G+++Q+ R + +   K   + +++A
Sbjct: 268 FDGM---IIFVRTKTATVELAEKLEARGYSAAPLNGDMNQQLRERTIERLKTSKLDIVIA 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+  V HV N+D+P  +E Y+HRIGRTGRAGR GKA   VA  + + +  IE
Sbjct: 325 TDVAARGIDVERVSHVVNYDIPYDSEAYVHRIGRTGRAGRSGKAILFVAPREKRLLYTIE 384

Query: 362 KLIEKKVDWLN 372
           K   K +  + 
Sbjct: 385 KATRKPITLME 395


>gi|260577582|ref|ZP_05845521.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
           43734]
 gi|258604306|gb|EEW17544.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
           43734]
          Length = 707

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 141/394 (35%), Positives = 229/394 (58%), Gaps = 13/394 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL   V+ AV   G+  P+PIQ +TIP++++ HDV G+AQTGTGKTA+F LP+L+
Sbjct: 75  SFDGLGLPENVLAAVKKVGFEVPSPIQAETIPVLMEGHDVVGLAQTGTGKTAAFALPILS 134

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++      R P+ L+L PTRELA QVA++F+ + ++      L I G   +  Q   L 
Sbjct: 135 RIDVS---KRHPQALVLAPTRELALQVAESFQSFSEHLGGIHVLPIYGGQAYGVQLSGLR 191

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +++ TPGR++DH  +G L ++ +  +V+DEAD ML+MGF   ++ I    P  +Q 
Sbjct: 192 RGAHIVVGTPGRVIDHLEKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPSDKQV 251

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++++S+ +L +P+ I V     T+E IE  ++       +        + 
Sbjct: 252 ALFSATMPSGIRRLSKQYLSDPREITVKATQRTSENIEQDYLLVSH---RDKLDALTRIL 308

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K     L   L  +GF+  AI+G+I Q  R + +   K+G + ++V
Sbjct: 309 EITEFEAMIMFVRTKNETEELAERLRARGFNAAAINGDIPQNLRERTVDQLKDGRLDILV 368

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HVFN+D+P+  E+Y+HRIGRTGRAGR G+A   V   + + + +I
Sbjct: 369 ATDVAARGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAGRKGRAILFVTPRERRLLKSI 428

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           E+  + +++ +        P ++ ++ A+    R
Sbjct: 429 ERATKSRLNEIE------LPTVDAVNEARKEKFR 456


>gi|117621566|ref|YP_856876.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117562973|gb|ABK39921.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 466

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 160/371 (43%), Positives = 227/371 (61%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY  P+PIQ + IP VL   D+   AQTGTGKTA F LPML
Sbjct: 1   MSFTSLGLAEPLLRAVAEQGYDTPSPIQQQAIPAVLAGRDLMAAAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L + + +V     R L+L PTRELAAQV ++   YGK+  +   ++ GG+    Q   
Sbjct: 61  QRLTESKRKVSPNRIRALVLTPTRELAAQVGESVRNYGKHLPIRSHVVFGGVSINPQMMA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             RG DVL+  PGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I +L+P  R
Sbjct: 121 TRRGLDVLVACPGRLMDLYNQNAVKFDEVEILVLDEADRMLDMGFIRDIRRILALLPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT  DE+++++   L NP  IEV   +STAE IE                    
Sbjct: 181 QNLLFSATFADEIRELATGLLDNPAVIEVAPRNSTAERIEQLVHPCDKANKIALLSHL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             + +  +  ++F   K     +  +L+K G S  AIHGN  Q +R + L+ FK+G++++
Sbjct: 239 -VTSNNWQQVLVFTRTKHMANRVAETLDKNGVSAAAIHGNKSQGARTRALAGFKDGSVKV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  +  V NF++PN AE+Y+HRIGRTGRAG  G A +LVA ++ K I 
Sbjct: 298 LVATDIAARGLDIDKLPQVVNFELPNVAEDYVHRIGRTGRAGAAGHAISLVAADEGKLIK 357

Query: 359 AIEKLIEKKVD 369
           AIE+L ++ + 
Sbjct: 358 AIERLTKQNIP 368


>gi|487961|gb|AAB68392.1| Yhr065cp [Saccharomyces cerevisiae]
          Length = 543

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 145/426 (34%), Positives = 228/426 (53%), Gaps = 8/426 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L P+++ A  +  Y KPTPIQ K IP  L+ HD+ G+AQTG+GKTA+F +P+L 
Sbjct: 124 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 183

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   +         IL PTRELA Q+ + F+  G    +    ++GG+    Q + L R
Sbjct: 184 RLWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR 240

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH  N     +  ++ LV+DEADR+LDM F P +  I  ++P   +T
Sbjct: 241 KPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT 300

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSATMT ++ K+    L NP +  V+    T +T+    +           +     
Sbjct: 301 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNE 360

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               TM   IIF   K N   L        FS  A+HG+++Q  RM  L  FK G   ++
Sbjct: 361 FIGKTM---IIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSIL 417

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV++ D++ I  
Sbjct: 418 VATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 477

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+++ KK+   + D + +    + +D A      + N   ++     + ++     + +
Sbjct: 478 IEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIARGKGRRGRMMTREN 537

Query: 420 IPLKES 425
           + + E 
Sbjct: 538 MDMGER 543


>gi|68536452|ref|YP_251157.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
 gi|68264051|emb|CAI37539.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
          Length = 713

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 141/394 (35%), Positives = 229/394 (58%), Gaps = 13/394 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL   V+ AV   G+  P+PIQ +TIP++++ HDV G+AQTGTGKTA+F LP+L+
Sbjct: 75  SFDGLGLPENVLAAVKKVGFEVPSPIQAETIPVLMEGHDVVGLAQTGTGKTAAFALPILS 134

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++      R P+ L+L PTRELA QVA++F+ + ++      L I G   +  Q   L 
Sbjct: 135 RIDVS---KRHPQALVLAPTRELALQVAESFQSFSEHLGGIHVLPIYGGQAYGVQLSGLR 191

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +++ TPGR++DH  +G L ++ +  +V+DEAD ML+MGF   ++ I    P  +Q 
Sbjct: 192 RGAHIVVGTPGRVIDHLEKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPSDKQV 251

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++++S+ +L +P+ I V     T+E IE  ++       +        + 
Sbjct: 252 ALFSATMPSGIRRLSKQYLSDPREITVKATQRTSENIEQDYLLVSH---RDKLDALTRIL 308

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K     L   L  +GF+  AI+G+I Q  R + +   K+G + ++V
Sbjct: 309 EITEFEAMIMFVRTKNETEELAERLRARGFNAAAINGDIPQNLRERTVDQLKDGRLDILV 368

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HVFN+D+P+  E+Y+HRIGRTGRAGR G+A   V   + + + +I
Sbjct: 369 ATDVAARGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAGRKGRAILFVTPRERRLLKSI 428

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           E+  + +++ +        P ++ ++ A+    R
Sbjct: 429 ERATKSRLNEIE------LPTVDAVNEARKEKFR 456


>gi|37362659|ref|NP_011932.2| Rrp3p [Saccharomyces cerevisiae S288c]
 gi|81175193|sp|P38712|RRP3_YEAST RecName: Full=ATP-dependent rRNA helicase RRP3; AltName:
           Full=Ribosomal RNA-processing protein 3
 gi|285809971|tpg|DAA06758.1| TPA: Rrp3p [Saccharomyces cerevisiae S288c]
          Length = 501

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 145/426 (34%), Positives = 228/426 (53%), Gaps = 8/426 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L P+++ A  +  Y KPTPIQ K IP  L+ HD+ G+AQTG+GKTA+F +P+L 
Sbjct: 82  SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 141

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   +         IL PTRELA Q+ + F+  G    +    ++GG+    Q + L R
Sbjct: 142 RLWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR 198

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH  N     +  ++ LV+DEADR+LDM F P +  I  ++P   +T
Sbjct: 199 KPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT 258

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSATMT ++ K+    L NP +  V+    T +T+    +           +     
Sbjct: 259 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNE 318

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               TM   IIF   K N   L        FS  A+HG+++Q  RM  L  FK G   ++
Sbjct: 319 FIGKTM---IIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSIL 375

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV++ D++ I  
Sbjct: 376 VATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 435

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+++ KK+   + D + +    + +D A      + N   ++     + ++     + +
Sbjct: 436 IEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIARGKGRRGRMMTREN 495

Query: 420 IPLKES 425
           + + E 
Sbjct: 496 MDMGER 501


>gi|260774211|ref|ZP_05883126.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260611172|gb|EEX36376.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 442

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 124/416 (29%), Positives = 203/416 (48%), Gaps = 8/416 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL  +++  +    + + T IQ + IP+ +   D+   ++TG+GKT +F+LPML
Sbjct: 1   MQFKELGLDNRLLKTLAHYDFKQATDIQRQAIPVAMAGKDLLASSKTGSGKTLAFLLPML 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      R PR +IL PTRELA QV           + T  L+ GG  F  Q   L
Sbjct: 61  HKALKTKALSARDPRGVILVPTRELAKQVYSELRSALAGLSYTATLITGGENFNDQVNAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG   ++ TPGR+ DH     L +  ++ L++DEADRMLD+GF P +++I +     R+
Sbjct: 121 RRGPKFIVATPGRLADHLEHRSLFLQGLDTLILDEADRMLDLGFAPQLRHIHNAAKHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +  +       +   +       +  +         +      L   +
Sbjct: 181 QTLMFSATLDHAEMNTIAHEMLKEPKRIAIGLGNEQHKDIRQRFYLCDHLDHKEALLDRI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  IIF   + +   L + L +Q   V A+ G++ Q  R  I+S F+    +++
Sbjct: 241 LNDAEYRQVIIFTATRADTERLTNKLNEQNLKVVALSGSLTQTQRNTIMSQFERAVFKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDI +V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D      
Sbjct: 301 VTTDIASRGLDIANVTHVINFDMPKHTEEYVHRVGRTGRAGNQGDAISLVGPKDWDSFKR 360

Query: 360 IEKLIEKKVDW-----LNGDLSSLNP--PLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           +E  +++ + +     L G  + L P  PL K  ++     ++   +PQK    D+
Sbjct: 361 VEAFLQQDIQFEVLEGLQGKFTGLRPRQPLNKATVSTGKVKKQVKTLPQKPVKRDK 416


>gi|271499180|ref|YP_003332205.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270342735|gb|ACZ75500.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
          Length = 624

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 134/378 (35%), Positives = 225/378 (59%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLS  ++ A+ + GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   SFASLGLSAPILNALSEMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     ++ P+ L+L PTRELA QVA+   ++ K+      + +  G  ++ Q + L 
Sbjct: 67  NIKA---DLKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + +P   QT
Sbjct: 124 QGPQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F+ +P+ + + +  +T   I   +   Y     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEA---LIRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E++++  +  +    + L
Sbjct: 361 ERIMKLTIPEVELPNAEL 378


>gi|111219903|ref|YP_710697.1| cold-shock DeaD box ATP-dependent RNA helicase [Frankia alni
           ACN14a]
 gi|111147435|emb|CAJ59085.1| cold-shock DeaD box ATP-dependent RNA helicase [Frankia alni
           ACN14a]
          Length = 608

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 138/393 (35%), Positives = 218/393 (55%), Gaps = 12/393 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L L P+++ ++   GY +PTPIQ + +P ++   D+ G A TGTGKTA+F LP+L  
Sbjct: 59  FAELALRPELLRSLAALGYEEPTPIQREAVPPLVAGRDLLGQAATGTGKTAAFALPLLHR 118

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   R     P+ L+L PTRELA QV++   +YG++    V  + GG P   Q + L +G
Sbjct: 119 LTDDRTGDHGPQALVLVPTRELAVQVSEAIHRYGRDLGARVLPVYGGAPIGRQVRALVQG 178

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR LDH  RG L ++ +  +V+DEAD MLDMGF   I  I    P  RQT+L
Sbjct: 179 VDVVVATPGRALDHMGRGTLRLDGLHTVVLDEADEMLDMGFAEDIDAILEQAPQKRQTVL 238

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + +++   L++P RI++   +            +Y             +   
Sbjct: 239 FSATLPPRMDQIARRHLRDPVRIQIGRAAPEPGAAPLVRQVSYVVPRAYKTAALGRILDV 298

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           ++ ++ I+FC  ++ V  L  SL  +G+   ++HG + Q  R +++   +  T  L+VA+
Sbjct: 299 ESPRSAIVFCRTREEVDQLADSLNGRGYRAESLHGGMSQEQRERVMERLRTATADLLVAT 358

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD   + HV N+ VP+  ++Y+HRIGR GRAGR G A TL    + + +  IE+
Sbjct: 359 DVAARGLDFEQLTHVVNYSVPSAPDSYVHRIGRVGRAGREGVAITLAEPREHRMLKTIER 418

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           +  +++             +EK+      HAR+
Sbjct: 419 VTRQRI------------AVEKVPTVADLHARR 439


>gi|146292298|ref|YP_001182722.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145563988|gb|ABP74923.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
 gi|319425598|gb|ADV53672.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 433

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 154/434 (35%), Positives = 235/434 (54%), Gaps = 11/434 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     SP+++ A+ D GY + TPIQ + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             + +  +          IL PTRELAAQVADN   Y K  N +V  + GG+  E Q +K
Sbjct: 61  QKMVEKPSETLKSNARVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RGADV++ TPGR+L+H     + ++N++ LV+DEADRMLDMGF   IQ I   V   R
Sbjct: 121 LKRGADVIVATPGRLLEHLTACNVSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  ++K++ + +  P+ I V+  ++TA+T+         +  ++       
Sbjct: 181 QNLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F   ++    L   L   G     +HG   Q SR + L  F  G +++
Sbjct: 239 -IGKKNWQQVLVFTATREAADTLVKELNLDGIPSEVVHGEKGQGSRRRALREFVAGDVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDIP + +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLA 357

Query: 359 AIEKLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            IEKLI +K+  +       G    L   L+          R +N   Q       + + 
Sbjct: 358 DIEKLIGQKIRRVTVPGYEVGSRELLLKQLQTRRSFAKKQQRTDNAGAQVIAEKSMQGRR 417

Query: 413 YSSQKSHIPLKESE 426
              +    P K  +
Sbjct: 418 VKVKVGQAPSKAKK 431


>gi|224095173|ref|XP_002195734.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Taeniopygia
           guttata]
          Length = 842

 Score =  169 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 147/448 (32%), Positives = 226/448 (50%), Gaps = 20/448 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+ A++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 280 FHQCSFPQYVMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 339

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 340 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 399

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 400 RGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 459

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FLQ+  +I V     +A       V    +  K   L+Q + +
Sbjct: 460 LMWSATWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 519

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 520 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 579

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    
Sbjct: 580 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 639

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           + K++E+    +N  L  L      +D              + S+  +     Y      
Sbjct: 640 LIKVLEEANQAINPKLMQL------VDHRGGGGGGGGRSRYRTSSSVNNPNLMYQ----- 688

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRG 447
                 E+  +  + ++E   DS GFR 
Sbjct: 689 ------EECDRRLRGVKEGRRDSGGFRD 710


>gi|218530745|ref|YP_002421561.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4]
 gi|218523048|gb|ACK83633.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 510

 Score =  169 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 146/396 (36%), Positives = 231/396 (58%), Gaps = 8/396 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL+  V+ A+ +AGYV PTPIQ + +P  ++  D+CGIAQTGTGKTA+F LP+L 
Sbjct: 3   QFTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILH 62

Query: 62  ILEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L     R       +L   PTRELA+Q+AD+F  YG++   T  ++ GG+    Q + +
Sbjct: 63  RLSLDSRRAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQERAI 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR++D  +R  L +  +EILV+DEAD+MLD+GFI  ++ I  ++P  RQ
Sbjct: 123 APGVDILVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAKRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +L FSATM   +  +++ +L NP ++ V   ++TAE ++   +  +    +        +
Sbjct: 183 SLFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCHTGAKQAL---LNHV 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                ++  ++F   K     +   L+K      AIHGN  Q  R + L+ F++G+ +++
Sbjct: 240 LRDPKIERVLVFTRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSCRVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV N+D+PN  E+Y+HRIGRT RAG  G+A +    E+  ++  
Sbjct: 300 VATDIAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRD 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           IE+   +K+  + G      PP  +   AQ N A +
Sbjct: 360 IERTTRQKIP-VGGFPEGFVPPSRQ--EAQDNAAEE 392


>gi|197287125|ref|YP_002152997.1| ATP-dependent RNA helicase RhlB [Proteus mirabilis HI4320]
 gi|227357184|ref|ZP_03841553.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
 gi|226739541|sp|B4F1V3|RHLB_PROMH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|194684612|emb|CAR46501.1| ATP-dependent RNA helicase [Proteus mirabilis HI4320]
 gi|227162716|gb|EEI47683.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
          Length = 432

 Score =  169 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 136/421 (32%), Positives = 219/421 (52%), Gaps = 10/421 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKV+ A+   G+   T IQ  T+P+ ++ HD+ G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVIEALEKKGFSNCTQIQALTLPITVKGHDIAGQAQTGTGKTLAFLTSTFH 69

Query: 62  ILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L             PR LI+ PTRELA Q+  + +   ++  + + L  GG  ++ Q K
Sbjct: 70  YLLTHPAKEGHEKNQPRALIMAPTRELAVQIYTDAQPLAQSTGVKMGLAYGGDGYDEQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D++I T GR++D+  +G + +N I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLNNGVDIVIGTTGRLIDYVKQGHINLNAIQVVVLDEADRMYDLGFIKDIRWLFRRMPNA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + +    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 AERMNMLFSATLSYRVRELAFEQMNNPEYVEVEPEQ-KTGFSIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++  +  IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G I 
Sbjct: 249 TLIEEEWPERCIIFANTKHRCDDIWAHLAADGHRVGLLTGDVPQKKRLRILEDFTQGNID 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG+ G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGKSGNSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE  I+  +     +    L+ L  P  +    Q    R+NN  P++     R  +N 
Sbjct: 369 PAIETYIQHAIPVSKYNSDALLTDLPEPKRRHRPRQ-GQPRRNNSAPRRGNNTQRNNRNK 427

Query: 414 S 414
            
Sbjct: 428 R 428


>gi|268573672|ref|XP_002641813.1| C. briggsae CBR-INF-1 protein [Caenorhabditis briggsae]
 gi|187026294|emb|CAP34430.1| CBR-INF-1 protein [Caenorhabditis briggsae AF16]
          Length = 402

 Score =  169 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 200/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L  +++  +   G+ KP+ IQ + I       DV   AQ+GTGKTA+F + +L 
Sbjct: 30  SFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQ 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+    L++ PTRELA Q+       G+  N+ +   IGG       +KLE 
Sbjct: 90  RIDHSDPHVQA---LVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEN 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L  + I++ V+DEAD ML  GF   I ++   +P   Q +
Sbjct: 147 GIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYDVFRSMPQDVQVV 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+  V++ F++NP RI V     T E I   ++       K   L      +
Sbjct: 207 LLSATMPAEVLDVTDRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCDL--YN 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IFCN ++ V  L   +  + F+V  +HG++DQ  R  I+  F+ G+ ++++ 
Sbjct: 265 VVNVTQAVIFCNTRRKVDQLTEQMTSKQFTVSCLHGDMDQAERDTIMREFRSGSSRVLIT 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V + D + +  IE
Sbjct: 325 TDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEIE 384

Query: 362 KLIEKKVDWLNGDLSSL 378
                +++ +   ++ L
Sbjct: 385 TYYTTQIEEMPESIADL 401


>gi|294142598|ref|YP_003558576.1| ATP-dependent RNA helicase RhlB [Shewanella violacea DSS12]
 gi|293329067|dbj|BAJ03798.1| ATP-dependent RNA helicase RhlB [Shewanella violacea DSS12]
          Length = 438

 Score =  169 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 139/426 (32%), Positives = 227/426 (53%), Gaps = 9/426 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  L   +  A+ ++G+   TPIQ  ++P++LQ+ D+ G AQTGTGKT +F++    
Sbjct: 10  KFADFSLHEGIKTALNESGFEFCTPIQAASLPILLQKKDIAGQAQTGTGKTLAFLVATFE 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      ++  PR +I+ PTRELA Q+A +     K+  L V ++ GG  +E Q K
Sbjct: 70  HLLTTPIPEGRQLNQPRAMIMAPTRELAIQIAKDATLLAKHTGLKVGIVYGGESYEVQRK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+LI T GRI+D+  +G + ++ I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLDKGIDILIGTTGRIIDYVRQGIINLSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +  L    + T  ++     +       E    +   +T ++     +     +   L  
Sbjct: 190 KSRLNMLFSATLSMKVQELAYDH-MNEPEKVVIAPNEKTSKNIKEEIFYPSMDEKMRLLL 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +D  +  I+F N K +  N+   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 SLIEEDWPEKAIVFSNTKHSCENVWSWLSGDGHRVGLLTGDVPQKKRIRILEQFTTGELD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG+ G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGISISFACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            AIE+ I   +   N D   L   LE I      H RK+N  PQ  +G  R   + +  +
Sbjct: 369 PAIEEYILHSIPVSNYDSEGL---LEDIPAPIRIH-RKHNSRPQGRSGSGRSNGSRNGNR 424

Query: 418 SHIPLK 423
           +  P +
Sbjct: 425 NSAPRR 430


>gi|229170156|ref|ZP_04297843.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH621]
 gi|228613301|gb|EEK70439.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH621]
          Length = 481

 Score =  169 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 141/411 (34%), Positives = 237/411 (57%), Gaps = 14/411 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFTDYALSKEIVRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLACLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++K+S  ++ +P  IE+     T + IEH     +    ++   L + + +
Sbjct: 182 LFSATLPEDVEKLSRKYMDSPTHIEIKAAGITTDKIEH---TLFETREEEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA
Sbjct: 239 TENPDSCIIFCRTQENVDHVFKQLDRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG +GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK--NNPIPQKSTGFDRRK 410
           + I  ++        +L P  E++   +     K    PI +K    D  K
Sbjct: 359 EYIGFEIP------KALAPSKEEVMKGKAVFEEKIHAKPIIKKDKNADLNK 403


>gi|238793027|ref|ZP_04636656.1| DEAD/DEAH box helicase domain protein [Yersinia intermedia ATCC
           29909]
 gi|238727627|gb|EEQ19152.1| DEAD/DEAH box helicase domain protein [Yersinia intermedia ATCC
           29909]
          Length = 667

 Score =  169 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 140/372 (37%), Positives = 228/372 (61%), Gaps = 6/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS  ++ A+ D GY KP+PIQ++ IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 8   SFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLH 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     ++ P+ L+L PTRELA QVA     + K+ N    + +  G  ++ Q + L 
Sbjct: 68  NIKA---ELKSPQVLVLAPTRELAIQVAQALSDFSKHINGVNVVALYGGQRYDVQLRALR 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + +P   QT
Sbjct: 125 QGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPAEHQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM D +++++  F+++P+ + + +  +T   I   F      Y K  AL++    
Sbjct: 185 ALFSATMPDAIRRITRRFMKDPQEVRIQSSVTTRPDISQSFWRVGGGYRKNEALVR--FL 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE  G++  A++G+++Q  R + L+  K+G + +++
Sbjct: 243 ESEDFDAAIIFVRTKNGTLEVAEALESSGYNCAALNGDMNQSLREQTLNRLKDGRLDILI 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 303 ATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNI 362

Query: 361 EKLIEKKVDWLN 372
           E+ ++  +  + 
Sbjct: 363 ERTMKLTIPEVQ 374


>gi|254580545|ref|XP_002496258.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
 gi|238939149|emb|CAR27325.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
          Length = 494

 Score =  169 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 140/428 (32%), Positives = 222/428 (51%), Gaps = 8/428 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L P+++ A  +  + KPTPIQ + IP  L+  D+ G+AQTG+GKTA+F +P+L 
Sbjct: 73  SFNDLNLVPELIEACKNLNFDKPTPIQARAIPPALEGRDIIGLAQTGSGKTAAFAIPILN 132

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L       +     +L PTRELA Q  + F+  G    +    ++GG+    Q ++L R
Sbjct: 133 RL---WEDKQPYYACVLAPTRELAQQTKETFDSLGALMGVRSTCIVGGMNMMDQARELMR 189

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH  N     +  +  LV+DEADR+LDM F P +  I  ++P   +T
Sbjct: 190 KPHIIIATPGRLMDHLENTKGFSLRKLRFLVMDEADRLLDMEFGPVLDKILKVIPTQDRT 249

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSATMT ++ K+    L  P +  V+    T +T+    +   +       +     
Sbjct: 250 TYLFSATMTSKIDKLQRASLTEPVKCAVSNKYQTVDTLVQTLMVVPSGLKNTYLIYLL-- 307

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++  K  IIF   K N   L        F+  A+HG+++Q  R   L  FK G   ++
Sbjct: 308 -NENIGKTVIIFTRTKANAERLSALCNLLEFNATALHGDLNQNQRTGALDLFKAGRRSIL 366

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV++ D++ I  
Sbjct: 367 VATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 426

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+++ KK+   N D   +    + +D A      + N   ++              K+ 
Sbjct: 427 IEEVLGKKLPKENCDKEVVISLRDSVDKANGEVIMELNRRNKEKAARGGGGGRRGRMKAR 486

Query: 420 IPLKESEK 427
             +   E+
Sbjct: 487 TDMDREER 494


>gi|229065471|ref|ZP_04200719.1| ATP-dependent RNA helicase [Bacillus cereus AH603]
 gi|228715789|gb|EEL67561.1| ATP-dependent RNA helicase [Bacillus cereus AH603]
          Length = 450

 Score =  169 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 151/449 (33%), Positives = 243/449 (54%), Gaps = 18/449 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ +++ P+ I+V +   T +TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMEEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K  V  L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDW------LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           EK +   +        +  ++     P++K    +    R+ +      +G     +N S
Sbjct: 360 EKTLGAPIQREIIEQPMIKNVDENGKPVQKPAPKKSGQYRQRDSREGSRSGSKGGPRNDS 419

Query: 415 SQKSHIP-----LKESEKISKLQQDIQEN 438
              S         K S K S  +Q+ Q  
Sbjct: 420 RNSSRNDNNRSFNKPSNKKSSTKQEQQRR 448


>gi|229133365|ref|ZP_04262193.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST196]
 gi|228650038|gb|EEL06045.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST196]
          Length = 450

 Score =  169 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 152/449 (33%), Positives = 242/449 (53%), Gaps = 18/449 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   DV G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDVIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ +++ P+ I+V +   T +TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMEEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K  V  L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDW------LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           EK +   +        +  ++     P++K    +    R+ +      +G     +N S
Sbjct: 360 EKTLGAPIQREIIEQPMIKNVDENGKPVQKPAPKKSGQYRQRDSREGSRSGSKGGPRNDS 419

Query: 415 SQKSHIP-----LKESEKISKLQQDIQEN 438
              S         K S K S  +Q  Q  
Sbjct: 420 RNSSRNDNNRSFNKPSNKKSSTKQGQQRR 448


>gi|197337698|ref|YP_002157744.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197314950|gb|ACH64399.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 496

 Score =  169 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 179/469 (38%), Positives = 257/469 (54%), Gaps = 11/469 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY  P+PIQ++ IP V++  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G  R        +L PTRELAAQV ++ EKY KN  LT  ++ GG+    Q ++L
Sbjct: 61  ERLSNGPKRKFNQVRALVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DVL+ TPGR+LD  N+  +  + +EILV+DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 121 RRGVDVLVATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILAKLPKNRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++++++  +++P  I V   ++TAET+E                +   L
Sbjct: 181 NLLFSATFSDEIRQLAKGLVKDPVEISVAKRNTTAETVEQSVYVMDKGRK---PKVLTKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  K  ++F   K     L  +LE++G S  AIHGN  Q +R K L+NFK G ++++
Sbjct: 238 IKDNDWKQVLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N D+P   E+Y+HRIGRTGRAG  GKA + V++++ K + A
Sbjct: 298 VATDIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEAKELFA 357

Query: 360 IEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD--RRKKNYSS 415
           IE+LI+K +    L G       P  K+D       +       +    D  R  +N + 
Sbjct: 358 IERLIQKVLPRHVLEGFEPVNKVPESKLDTRPIKPKKPKKTKAPRVEHKDGQRSGENRNG 417

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            K           +      +E        R   P    PK +G   ++
Sbjct: 418 NKQGQKPAAKRAPTNNPSSKKEGTGSDKKKR---PFSGKPKTKGTGENR 463


>gi|152995916|ref|YP_001340751.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150836840|gb|ABR70816.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 398

 Score =  169 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 154/401 (38%), Positives = 229/401 (57%), Gaps = 6/401 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M FA LGLS  +V A+ + GY  PTP+Q + IP++L   D+   AQTGTGKTA+FVLP +
Sbjct: 1   MPFAKLGLSSPLVQAITELGYKTPTPVQKQAIPIILSGKDLIATAQTGTGKTAAFVLPLL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               + G  R +  R LIL PTRELA QV  +  +Y K+  LT   + GG+  EAQ ++L
Sbjct: 61  ERFTKAGTLRGKRIRVLILVPTRELAVQVEASVAQYAKHTKLTSMAVYGGVDTEAQKERL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD  ++  L  + ++++V+DEADRM+DMGF+  I  I   +P  RQ
Sbjct: 121 IEGVDILVATPGRLLDLAHQRALHFDELKVMVLDEADRMVDMGFVGDINKIMERLPENRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQ 237
            LLFSATMTD+++ ++ +F  +         S +       +             + L  
Sbjct: 181 NLLFSATMTDDVRALAFDFSDSKMTDLAAEISISPNVRAAANIKQWLITVDKDTKSALLS 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L ++      +IF  +K     L   L K+G     IHG+  Q  R KIL+ FK G ++
Sbjct: 241 HLINEQKWDQALIFIEKKHGAAKLVDQLAKRGIVADCIHGDRSQAMREKILAQFKSGELK 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+ +AARGLDI ++  V N+D+P + E YIHRIGRTGRAG  G+A + VA  D K++
Sbjct: 301 YLVATGVAARGLDIGELSRVVNYDLPFKPEEYIHRIGRTGRAGALGEAISFVAMGDFKNL 360

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
            AIE  ++  +D    +++   P  + + ++  N+ RK N 
Sbjct: 361 CAIESRLKHIIDR--KEIAGF-PVRKVVPVSILNYVRKANR 398


>gi|160898343|ref|YP_001563925.1| DEAD/DEAH box helicase domain-containing protein [Delftia
           acidovorans SPH-1]
 gi|160363927|gb|ABX35540.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
          Length = 598

 Score =  169 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 148/374 (39%), Positives = 233/374 (62%), Gaps = 8/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AVL+ GY  PTPIQ + IP VL  HD+   AQTGTGKTA+F LPML
Sbjct: 1   MTFEELNLAPAILKAVLEEGYENPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L +G+           R L+L PTRELAAQV ++   Y K  ++   ++ GG+  + Q
Sbjct: 61  QRLSQGQVPRNKFGGKGIRALVLTPTRELAAQVEESVRSYAKYLDINSTVIFGGVGMKPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             ++++G D+L+ TPGR+LD   +G + ++ +E+LV+DEADRMLDMGFI  ++ + +LVP
Sbjct: 121 IDRIKKGVDILVATPGRLLDLQQQGFMDLSTVEVLVLDEADRMLDMGFIHDVKKVLALVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE++ ++   L+NP+ I+V   ++T + I            K+    
Sbjct: 181 KDKQSLLFSATFSDEIRDLANGLLRNPQSIQVTPSNTTVQRITQVIHPVGRGKKKQV--- 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              + +++     ++F   K    N+   L K   S  A+HGN  Q +R + L+ FK G 
Sbjct: 238 LLHIINENNWSQVLVFTRTKFGANNVAEFLTKNNISAMALHGNKSQSARTQALAGFKTGE 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VA+D+AARG+DI ++ HV N+++PN +E+Y+HRIGRTGRAGR G A +LV  ++  
Sbjct: 298 LRALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGREGHAVSLVCMDEEG 357

Query: 356 HIDAIEKLIEKKVD 369
            +  IE+  ++++ 
Sbjct: 358 FMMDIERFTKQEIP 371


>gi|50086240|ref|YP_047750.1| putative ATP-dependent RNA helicase [Acinetobacter sp. ADP1]
 gi|49532216|emb|CAG69928.1| putative ATP-dependent RNA helicase [Acinetobacter sp. ADP1]
          Length = 640

 Score =  169 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 146/462 (31%), Positives = 235/462 (50%), Gaps = 18/462 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FAD  L   +  A+ D G+  PTP+Q + IP  L+  D+   +QTG+GKTA+F+LP L 
Sbjct: 8   NFADFSLHESLQQALQDLGFTSPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLH 67

Query: 62  ---------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                      ++    V  P  L++ PTRELA QV+ +     ++        I G   
Sbjct: 68  SLAGQDTFLPFKERMRAVTQPNILVISPTRELAQQVSQDAIALVRHMKGVRIAAIMGGMP 127

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
            A+  +  +GA V++ TPGR+LD  NR ++ ++ ++ L++DEADRMLD+GF   ++ I+ 
Sbjct: 128 FAKQIQQLKGAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEADRMLDLGFSEDLEAISE 187

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L    +QTL+FSAT  D + +++E  +Q+P RI + T  ST   I      T     K  
Sbjct: 188 LAANRKQTLMFSATFADRIIRLAECMMQDPMRIAIETGHSTNTDITQTLHWTDGFEHK-- 245

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L     S ++M   ++F + +++   L   L + G SV A+HG + Q  R + L + +
Sbjct: 246 KKLLTHWLSDESMDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIR 305

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL    
Sbjct: 306 EGKAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYR 365

Query: 353 DIKHIDAIEKLIEKKVDWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           +   I A+E  +E ++     + L    PP              N    +          
Sbjct: 366 ERGKIRALEDYLEARLSVSEIEGLEPSPPPARSGRDGGGRGRGGNGGGRRDGGRGGFGGG 425

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFM 453
                +S+   ++  +  + ++   +        RG  PAF 
Sbjct: 426 RRFEGESNFKRRDGGRDDRPKRSFDDKP------RGERPAFG 461


>gi|328863155|gb|EGG12255.1| hypothetical protein MELLADRAFT_46659 [Melampsora larici-populina
           98AG31]
          Length = 542

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 133/466 (28%), Positives = 213/466 (45%), Gaps = 28/466 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F DL L   ++  + +AG+ +P+PIQ + IP+ L   D+   A+ GTGKT +FV+P L
Sbjct: 38  VEFEDLYLRRDLLMGIFEAGFERPSPIQEEAIPIALAGRDILARAKNGTGKTGAFVIPSL 97

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                   R++    LIL PTRELA Q +   +  GK+  + + +  GG   +    +L+
Sbjct: 98  EKTNVKLNRIQA---LILVPTRELALQTSQVCKTLGKHTGIQIMVTTGGTTLKDDILRLQ 154

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +G   ++  +  V+DEAD++L   F   I+ + S +   RQ 
Sbjct: 155 ETVHIVVGTPGRILDLAGKGVADLSQCKTFVMDEADKLLSPEFTVVIEQLLSFLHKERQV 214

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F                 T++           ++       L 
Sbjct: 215 MLFSATFPMIVKD----FKDKHMVKPYEINLMEELTLQGVTQYYAFLEERQKVHCLNTLF 270

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   +   G+S    H  + Q+ R ++  +F+ G  + +V
Sbjct: 271 SKLQINQAIIFCNSTNRVELLARKITDIGYSCFYSHAKMLQQHRNRVFHDFRNGVCRNLV 330

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  E+   +  I
Sbjct: 331 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGIAINLITYENRFDLYRI 390

Query: 361 EKLIEKKVDWLNGD----------LSSLNPPLEK--------IDIAQHNHARKNNPIPQK 402
           E+ +  ++  +             +     P  K         + AQH +A  NN  PQ 
Sbjct: 391 EQELGTEIQPIPAVIDKALYVAPGIEDTPAPTSKRQQQSASSTNAAQHANANTNNRGPQD 450

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
           S   + R+ N  SQ S  P +  +K +   Q +    A  +    +
Sbjct: 451 SR--NNRQAN-QSQPSSNPSQPHDKPTLPPQQLTFQKAAPIDSLSH 493


>gi|109124055|ref|XP_001115617.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Macaca
           mulatta]
          Length = 527

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 162/460 (35%), Positives = 235/460 (51%), Gaps = 31/460 (6%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M  FA+LGLS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+
Sbjct: 1   MSGFAELGLSSWLVAQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  L +          L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L
Sbjct: 61  LQKLSE---DPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALEL 117

Query: 120 ERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI---QNITSLVP 175
            R   V+I TPGR      +     +  I  LV+DEADR+L+ G   +    + I + VP
Sbjct: 118 SRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVP 177

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCAL 234
             RQTLLFSAT+TD L+++       P   E   P ST E ++  ++             
Sbjct: 178 ARRQTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVH 237

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L Q  Q +    + IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK  
Sbjct: 238 LIQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSS 297

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             ++++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI
Sbjct: 298 IYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDI 357

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
             + AIE+ I+KK++  + + + +   L      Q N  R+   I  ++  FD +K+   
Sbjct: 358 HLVHAIEEQIKKKLEEFSVEEAEVLQIL-----TQVNVVRRECEIKLEAAHFDEKKE--- 409

Query: 415 SQKSHIPLKESEKISKLQQDIQE-NDADSLGFRGNMPAFM 453
                        I+K +Q I E  D D    R + P  +
Sbjct: 410 -------------INKRKQLILEGKDPDLEAKRKSPPRAL 436


>gi|110598174|ref|ZP_01386451.1| Helicase-like:DEAD/DEAH box helicase-like [Chlorobium ferrooxidans
           DSM 13031]
 gi|110340188|gb|EAT58686.1| Helicase-like:DEAD/DEAH box helicase-like [Chlorobium ferrooxidans
           DSM 13031]
          Length = 418

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 154/427 (36%), Positives = 234/427 (54%), Gaps = 11/427 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L +   ++ ++ + GY  PTPIQ + IP+VLQ +D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MQFHSLDIIEPILKSLQEEGYTTPTPIQAEAIPIVLQGNDLLGCAQTGTGKTAAFAIPIL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                     + R  R+LIL PTRELA Q+ ++F  YG++  L   ++ GG+    Q   
Sbjct: 61  QLLSESHSNEKKRKIRSLILTPTRELAIQIGESFRAYGRHTGLNNTVIFGGVNQNPQISA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D++I TPGR+LD  N+G L + ++EI V+DEADRMLDMGFI  I+ + +++P  +
Sbjct: 121 LRNGVDIVIATPGRLLDLMNQGFLNLRDVEIFVLDEADRMLDMGFIHDIKKVLAVLPKKK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSAT+  E+ +++   L NP  + V   SST + I+                    
Sbjct: 181 QSLFFSATLPPEIVRLAGTILHNPSEVSVTPISSTVDIIQQHIYFVDKGNKNSL---LVD 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +    ++K  ++F   K     +   L        AIHGN  Q +R + LSNFK  T ++
Sbjct: 238 ILKDQSIKTALVFTRTKHGADKVVKFLSHHNIRAEAIHGNKAQNARQRALSNFKNQTTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ ++ +V NF++ N AE Y+HRIGRTGRAG  G A++    E+ +++ 
Sbjct: 298 LVATDIAARGIDVDELEYVINFEISNIAETYVHRIGRTGRAGAKGTAYSFCDAEEKEYLR 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEKLI KK+  ++      N P   ID       ++N        G     K    + S
Sbjct: 358 DIEKLIGKKIPVID------NHPFPLIDHNPVKAPKQNGRGNSGHPGPKPPAKTAPKRWS 411

Query: 419 HIPLKES 425
             P +  
Sbjct: 412 SRPGRTR 418


>gi|91792251|ref|YP_561902.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91714253|gb|ABE54179.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 473

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 156/451 (34%), Positives = 243/451 (53%), Gaps = 22/451 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ A+ + GY  PTPIQ K IP++L+ H++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSTLGLSQPILLALEELGYQTPTPIQEKAIPVILEGHNLIAAAQTGTGKTASFVLPLL 60

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            ++         + R +  R LIL PTRELA QVA+N E+Y K+ +LT   + GG+    
Sbjct: 61  ELINNTSLDNTVKVRPKRIRALILTPTRELAVQVAENIEQYSKHLSLTSLAIYGGVDAAP 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             K+L  G D+L+ TPGR+LD + +  +  + +  LV+DEADRMLDMGFI  I  I   +
Sbjct: 121 HKKRLIEGVDILVATPGRLLDMYTQRAVHFDELTHLVLDEADRMLDMGFIEDINKIIDKL 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT++ +++ +++  +Q+ K I ++      +  +        + S   + 
Sbjct: 181 PQERQNLLFSATLSPQVRFLAKTAVQHAKEIAISAKVGKPKIEQWLTAVDKEKKSALISQ 240

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L +           +IF   K     L   LEK+     AIH    Q SR ++L++FK G
Sbjct: 241 LIKENDW----PQALIFIETKHGAAKLVSQLEKRDIQAEAIHSGRSQASREQVLADFKSG 296

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            ++ +VA+ +A+RGLDI D+  V N+D+P   E+Y+HRIGRTGRAG  G+A + V+ +D 
Sbjct: 297 KVRYLVATGIASRGLDIDDLARVVNYDLPFPPEDYVHRIGRTGRAGAQGEAISFVSNDDF 356

Query: 355 KHIDAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           K++ AIE+L+  +++   + G       P   +                K  G   R   
Sbjct: 357 KNLCAIERLLGHEIERRVIAGFEPKRPLPASNLSFV----------PAHKRDGHQPRTSE 406

Query: 413 YSSQKSHIPLKESEKISKLQQDIQENDADSL 443
             + K+  P+K       +  + ++  +   
Sbjct: 407 RHTTKARTPVKPKAPREGVPFEPRQGRSAEQ 437


>gi|323354635|gb|EGA86470.1| Rrp3p [Saccharomyces cerevisiae VL3]
          Length = 501

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 145/426 (34%), Positives = 228/426 (53%), Gaps = 8/426 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L P+++ A  +  Y KPTPIQ K IP  L+ HD+ G+AQTG+GKTA+F +P+L 
Sbjct: 82  SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 141

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   +         IL PTRELA Q+ + F+  G    +    ++GG+    Q + L R
Sbjct: 142 RLWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR 198

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH  N     +  ++ LV+DEADR+LDM F P +  I  ++P   +T
Sbjct: 199 KPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT 258

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSATMT ++ K+    L NP +  V+    T +T+    +           +     
Sbjct: 259 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNE 318

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               TM   IIF   K N   L        FS  A+HG+++Q  RM  L  FK G   ++
Sbjct: 319 FIGKTM---IIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSIL 375

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV++ D++ I  
Sbjct: 376 VATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 435

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+++ KK+   + D + +    + +D A      + N   ++     + ++     + +
Sbjct: 436 IEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIARGKGRRGRMMTREN 495

Query: 420 IPLKES 425
           + + E 
Sbjct: 496 MDMGER 501


>gi|323348235|gb|EGA82484.1| Rrp3p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 543

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 145/426 (34%), Positives = 228/426 (53%), Gaps = 8/426 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L P+++ A  +  Y KPTPIQ K IP  L+ HD+ G+AQTG+GKTA+F +P+L 
Sbjct: 124 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 183

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   +         IL PTRELA Q+ + F+  G    +    ++GG+    Q + L R
Sbjct: 184 RLWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR 240

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH  N     +  ++ LV+DEADR+LDM F P +  I  ++P   +T
Sbjct: 241 KPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT 300

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSATMT ++ K+    L NP +  V+    T +T+    +           +     
Sbjct: 301 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNE 360

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               TM   IIF   K N   L        FS  A+HG+++Q  RM  L  FK G   ++
Sbjct: 361 FIGKTM---IIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSIL 417

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV++ D++ I  
Sbjct: 418 VATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 477

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+++ KK+   + D + +    + +D A      + N   ++     + ++     + +
Sbjct: 478 IEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIARGKGRRGRMMTREN 537

Query: 420 IPLKES 425
           + + E 
Sbjct: 538 MDMGER 543


>gi|259146813|emb|CAY80069.1| Rrp3p [Saccharomyces cerevisiae EC1118]
          Length = 501

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 145/426 (34%), Positives = 228/426 (53%), Gaps = 8/426 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L P+++ A  +  Y KPTPIQ K IP  L+ HD+ G+AQTG+GKTA+F +P+L 
Sbjct: 82  SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 141

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   +         IL PTRELA Q+ + F+  G    +    ++GG+    Q + L R
Sbjct: 142 RLWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR 198

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH  N     +  ++ LV+DEADR+LDM F P +  I  ++P   +T
Sbjct: 199 KPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT 258

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSATMT ++ K+    L NP +  V+    T +T+    +           +     
Sbjct: 259 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNE 318

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               TM   IIF   K N   L        FS  A+HG+++Q  RM  L  FK G   ++
Sbjct: 319 FIGKTM---IIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSIL 375

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV++ D++ I  
Sbjct: 376 VATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 435

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+++ KK+   + D + +    + +D A      + N   ++     + ++     + +
Sbjct: 436 IEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIARGKGRRGRMMTREN 495

Query: 420 IPLKES 425
           + + E 
Sbjct: 496 MDMGER 501


>gi|160358662|sp|A6ZSX1|RRP3_YEAS7 RecName: Full=ATP-dependent rRNA helicase RRP3; AltName:
           Full=Ribosomal RNA-processing protein 3
 gi|151944009|gb|EDN62302.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789]
 gi|190405848|gb|EDV09115.1| weak RNA-dependent ATPase activity which is not specific for rRNA
           [Saccharomyces cerevisiae RM11-1a]
 gi|256270568|gb|EEU05749.1| Rrp3p [Saccharomyces cerevisiae JAY291]
 gi|323333235|gb|EGA74633.1| Rrp3p [Saccharomyces cerevisiae AWRI796]
          Length = 501

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 145/426 (34%), Positives = 228/426 (53%), Gaps = 8/426 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L P+++ A  +  Y KPTPIQ K IP  L+ HD+ G+AQTG+GKTA+F +P+L 
Sbjct: 82  SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 141

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   +         IL PTRELA Q+ + F+  G    +    ++GG+    Q + L R
Sbjct: 142 RLWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR 198

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH  N     +  ++ LV+DEADR+LDM F P +  I  ++P   +T
Sbjct: 199 KPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT 258

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSATMT ++ K+    L NP +  V+    T +T+    +           +     
Sbjct: 259 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNE 318

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               TM   IIF   K N   L        FS  A+HG+++Q  RM  L  FK G   ++
Sbjct: 319 FIGKTM---IIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSIL 375

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV++ D++ I  
Sbjct: 376 VATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 435

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+++ KK+   + D + +    + +D A      + N   ++     + ++     + +
Sbjct: 436 IEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIARGKGRRGRMMTREN 495

Query: 420 IPLKES 425
           + + E 
Sbjct: 496 MDMGER 501


>gi|118444591|ref|YP_877094.1| ATP-dependent RNA helicase [Clostridium novyi NT]
 gi|118135047|gb|ABK62091.1| ATP-dependent RNA helicase [Clostridium novyi NT]
          Length = 528

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 147/384 (38%), Positives = 219/384 (57%), Gaps = 9/384 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L +S ++  A+ D G+ +P+PIQ K IP +L   D+ G AQTGTGKTA+F +P L
Sbjct: 4   IKFENLPISDEIKSAIADMGFEEPSPIQEKAIPFILSGKDIIGQAQTGTGKTAAFGIPAL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++     ++    ++L PTRELA Q      K GK       L I  G P + Q K L
Sbjct: 64  DTIDLNNRNLQ---IMVLCPTRELAIQATQEITKLGKYKKGLNVLAIYGGQPIDRQIKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  ++I TPGR++DH NR  L  +NI+++V+DEAD MLDMGF   I+ I   VP  RQ
Sbjct: 121 KRGVQIVIGTPGRVIDHINRKTLKTDNIKMVVLDEADEMLDMGFRDDIETIIQSVPENRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + ++S+ +    + I          T+ +               +   L
Sbjct: 181 TILFSATMPKAIVELSKKYQTKAEFI---KVVHRQLTVPNIEQRYIEVKENFKIEVLSRL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  +IFCN KK V  +   L+ +G+    +HG++ Q  R +++S F+ GTI+++
Sbjct: 238 IDMRNPKLSVIFCNTKKRVDEVVSELQSRGYFAEGLHGDMKQPQRDRVMSKFRNGTIEIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G AFT VA + ++ +  
Sbjct: 298 VATDVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRSGIAFTFVAGKAMRKLRD 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE 383
           IE+  + K+     ++ S N   E
Sbjct: 358 IERYTKTKIKR--AEIPSANDVEE 379


>gi|292489103|ref|YP_003531990.1| ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
 gi|292900225|ref|YP_003539594.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291200073|emb|CBJ47199.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291554537|emb|CBA22120.1| ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
 gi|312173260|emb|CBX81515.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC BAA-2158]
          Length = 442

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 138/430 (32%), Positives = 221/430 (51%), Gaps = 7/430 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ ++ + G+ +PT IQ + IP  L+  DV G A TGTGKTA+++LP + 
Sbjct: 5   TFSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K+  L +A + GG+ F    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTRLDIATITGGVAFMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ T GR+L +          +E L++DEADRMLDMGF   I+ I++   + +QT
Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  E  K     + N     +    +  E  +       A   K    L   L 
Sbjct: 185 LLFSATLEGEAIKDFAERILNEPVE-IEADPARRERKKIQQWYYRADDIKHKTALLLHLL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   ++F  +++ V  +C  L + G +   + G + Q  R + +    +G + ++V
Sbjct: 244 KQPEVTRAVVFVRKRERVHEVCGWLREAGINSSYLEGELVQAKRNEAIKRVVDGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  ++ Y+HRIGRTGRAG+ G A +LV   D   +  I
Sbjct: 304 ATDIAARGIDIDDVSHVINFDMPVTSDTYLHRIGRTGRAGKKGIAISLVEAHDNLLLGKI 363

Query: 361 EKLIEKK-----VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            + +++      +D L     + N  L+     +    R      QK+    R K+ + +
Sbjct: 364 IRYVKEPIKARVIDQLRPTTRAPNEKLKGKPSKKVLAKRVEQKNKQKAEEKPRVKERHRN 423

Query: 416 QKSHIPLKES 425
            K+    ++ 
Sbjct: 424 SKNIGKRRKP 433


>gi|326201867|ref|ZP_08191737.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325987662|gb|EGD48488.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 481

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 138/400 (34%), Positives = 228/400 (57%), Gaps = 12/400 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  LS +++ A+    +  PT +Q K IP V+++ D+   +QTG+GKTA+F +P+  
Sbjct: 4   SFIDYKLSNEILKAISMLNFKSPTKVQEKVIPAVIEKKDIIVKSQTGSGKTAAFAVPICE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   L V+ + G  PF  Q K+L++
Sbjct: 64  LVEWDENK---PQALVLTPTRELAIQVKEDIFNIGRFKRLKVSAIYGKSPFYNQEKELKQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGRI+DH  R     +NI+ LVIDEAD ML MGFI  I+ I S +   R T+
Sbjct: 121 KTHVVVGTPGRIIDHIERNTFDTSNIKYLVIDEADEMLHMGFIEQIETIVSSLSKERVTV 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  +++ +   +++ P R+E+   ++T + +             K     + +  
Sbjct: 181 LLSATMPIDIETLCNKYMKEPIRVEIEEQNTTTDRVHQERYDVERASKIKL---LRDITI 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFCN K+ V ++   L    +S   IHG +DQR R+K++++FK G  + ++A
Sbjct: 238 VENPDSCIIFCNTKQKVDDVYDRLLLFKYSCEKIHGGMDQRDRLKVMNDFKRGYFRYLIA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++  V N+D+P   E Y+HRIGRTGR GR GKA + V +++ K+++ I 
Sbjct: 298 TDVAARGIDIDNISLVINYDIPQDGETYVHRIGRTGRIGRDGKAISFVTEDESKYLNDIN 357

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           + I K++      +    P  E ++  +   + K    P+
Sbjct: 358 QYIGKEI------ILKEKPDRETVNNLKQEFSEKIVTAPE 391


>gi|117921427|ref|YP_870619.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117613759|gb|ABK49213.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 433

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 158/438 (36%), Positives = 245/438 (55%), Gaps = 12/438 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F      P+++ A+ D GY K TPIQ + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             + +  +          IL PTRELAAQVADN E Y K  N +V  + GG+  E Q +K
Sbjct: 61  QKMVENPSETLKSNARVLILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RGAD+++ TPGR+L+H     L +++I+ LV+DEADRMLDMGF   IQ I   V   R
Sbjct: 121 LKRGADIIVATPGRLLEHLTACNLSLSSIDFLVLDEADRMLDMGFNADIQKILQAVNKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  ++K++ + +  P+ I  +  ++TA+T+         +  ++       
Sbjct: 181 QNLLFSATFSSAVKKLANDMMVKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F   +     L   L   G     +HG   Q SR + L  F  G +++
Sbjct: 239 -IGKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDIP + +V NFD+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLA 357

Query: 359 AIEKLIEKKVDWLN---GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            IEKLI +K+  +     ++ S +  L+++   + + A+K   +   S      K   S 
Sbjct: 358 DIEKLIGQKIRRITVPGYEVGSRDLLLKQLQT-RRSFAKKQQRLDNVSEQIIAEK---SM 413

Query: 416 QKSHIPLKESEKISKLQQ 433
           Q   + +K  +  SK ++
Sbjct: 414 QGRRVKMKVGQAPSKAKK 431


>gi|256073063|ref|XP_002572852.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238658018|emb|CAZ29084.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 769

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 143/425 (33%), Positives = 231/425 (54%), Gaps = 7/425 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F +L +   ++  +   G+  PTPIQ +  P+ L   DV GIAQTG+GKTASF+LP  
Sbjct: 92  LSFNELNVPDYILSVIAKNGWQLPTPIQSQGWPMALSGRDVVGIAQTGSGKTASFLLPAV 151

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  + +    R   P  LIL PTRELA QV    +++    +L      GG     Q ++
Sbjct: 152 IHIMAQPRLLRNEGPICLILVPTRELAQQVLVVAKEFADAASLRAMCFYGGSAKGTQLRE 211

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +++G ++ I TPGR++D     + L++ +  LV+DEADRMLDMGF P I+ I       R
Sbjct: 212 MQKGGEICIATPGRLIDFIRVQRNLLSRVTYLVLDEADRMLDMGFEPQIRKIIGHTRPDR 271

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+Q ++  FL +  ++ + + S  A       V     +SK+  L++ L
Sbjct: 272 QTLMWSATWPREVQTLAREFLTDYIQVNIGSVSLHANPNITQIVEIMDDWSKEQRLIELL 331

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     ++F   K+    L +SL ++GF V A+HG   QR R   L+NFK G + +
Sbjct: 332 TSFGR--ARTLVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLANFKSGRMNI 389

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RGLDI ++ +V NFD PN+ E+YIHRIGRT R+ + G AFT    ++++   
Sbjct: 390 LVATDVASRGLDIDNIEYVVNFDFPNQTEDYIHRIGRTARSDKTGTAFTFFTHKNVRQAR 449

Query: 359 AIEKLIEKKVDWLNGD---LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +  ++++    ++ +   L+ ++  L K    + N        P + TGF     ++ +
Sbjct: 450 DLIDILDEANQEISAELVQLAGMSNYLRKSSTLKKNPPAFQQKPPGRITGFGNSSSSFPT 509

Query: 416 QKSHI 420
           Q   I
Sbjct: 510 QDIRI 514


>gi|254168903|ref|ZP_04875743.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|197622167|gb|EDY34742.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
          Length = 451

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 137/386 (35%), Positives = 218/386 (56%), Gaps = 13/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ +S     A+ +  +V+PT +Q K IPL ++  D+   ++TG+GKT +F++P+ 
Sbjct: 4   LKFEDMSISKGTKNALKEHNFVEPTEVQEKAIPLAIKGRDLIVQSKTGSGKTLAFLIPIF 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  G   +      +L PTRELA QV       GK +     ++ GG P E Q   L+
Sbjct: 64  ENLNSGLEAI------VLVPTRELAQQVERVARSIGKAHGKRTVVIYGGAPMERQIAGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             + V I TPGR++D   RG L +N I   V+DEADRMLDMGFI  I+ I    P  +Q 
Sbjct: 118 GASMV-IGTPGRVMDLMRRGYLNLNGIRFFVLDEADRMLDMGFIDDIKWILQKTPKDKQM 176

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  E+  ++  +++NP++I ++    TAE +   +V           + +    
Sbjct: 177 MLFSATMPPEIISLARRYMKNPEKIILSEDEITAENVAQYYVEVGEINK----IAKLSSL 232

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IFCN ++   N+   L+K GF   A+HG++ Q +R + +  FK+G I ++V
Sbjct: 233 LISERGKYLIFCNTRRKTKNIAEILQKYGFKAFALHGDMRQATRTRTMDAFKQGKIDILV 292

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D+AARG+D+  + HV N+DVP   ++Y+HRIGRTGR   HGKA T V +ED ++   I
Sbjct: 293 STDVAARGIDVHGITHVVNYDVPLYPKDYVHRIGRTGRMDAHGKAITFVTREDKEYFRRI 352

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKID 386
           E  I K++  +  ++ ++    E+ID
Sbjct: 353 EDFIGKRIPKM--EIKNVGKIKERID 376


>gi|332073919|gb|EGI84397.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA41301]
          Length = 524

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 147/373 (39%), Positives = 224/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIRT---EEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + NIE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQNIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDIAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|222149464|ref|YP_002550421.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
 gi|221736447|gb|ACM37410.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
          Length = 484

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 153/375 (40%), Positives = 222/375 (59%), Gaps = 4/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLSP VV  +   G+  PTPIQ + IP+V+   D+ G+AQTGTGKTA+F LP++ 
Sbjct: 19  SFNELGLSPTVVATLTQLGFETPTPIQAQGIPVVMAGRDLIGLAQTGTGKTAAFGLPIIE 78

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +L K   R      RTLIL PTREL  Q+ DN   + +   + +  ++GG     Q  +L
Sbjct: 79  LLMKDERRPDNRTTRTLILAPTRELVNQIGDNLRSFIRKTPIKINQVVGGASINKQQLQL 138

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+L+ TPGR+LD  +R  + +  +  LV+DEAD+MLD+GFI  ++ I  +VP  RQ
Sbjct: 139 ERGTDILVATPGRLLDLISRNAISLRAVTHLVLDEADQMLDLGFIHDLRKIAKMVPAKRQ 198

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   +  ++ +FL NP  +EV+ P   A+ +E        Q  K    L +  
Sbjct: 199 TLLFSATMPKAIADLAGSFLNNPVTVEVSPPGKAADKVEQYVHFVNGQNHKTE--LLKKT 256

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       I+F   K     L   LE  GFSV +IHGN  Q  R + L  F++G+I+ +
Sbjct: 257 LADHPDGRSIVFLRTKHGAEKLMKHLEITGFSVASIHGNKSQGQRERALKGFRDGSIRTL 316

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DIP V HVFN+D+P   + Y+HRIGRT RAGR G A      ++ + +  
Sbjct: 317 IATDVAARGIDIPAVSHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCGPDEARLLRD 376

Query: 360 IEKLIEKKVDWLNGD 374
           IE+L+  ++   +G+
Sbjct: 377 IERLMGIEISVASGE 391


>gi|77359091|ref|YP_338666.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874002|emb|CAI85223.1| ATP-dependent RNA helicase with nucleoside triP hydrolase domain,
           putative cold-shock protein [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 420

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 139/419 (33%), Positives = 224/419 (53%), Gaps = 5/419 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  ++P+VV  + ++G+   TPIQ K +P + +  D+ G AQTGTGKT +F+     
Sbjct: 5   KFSDFAIAPEVVAGLTESGFEYCTPIQAKCLPFICEGRDIAGQAQTGTGKTLAFLTATCH 64

Query: 62  IL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L +  +A  + PR LI+ PTRELA Q+  + +    + NL + L+ GG  +E Q  +LE
Sbjct: 65  RLLQSSKAPSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGEDYEKQRAQLE 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+LI T GR++D + +G   +N IE++V+DEADRM D+GFI  I+ +   +P T + 
Sbjct: 125 KGVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMFHRMPDTSKR 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L    + T   +     F       E        +T +      +    +    L   L 
Sbjct: 185 LNLLFSATLSYRVQELAFEHMTN-PEHVQIEPDVKTGKRIQEELFHPSQEDKIKLLLTLI 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  IIF N K +   +   L+  G  V  + G+++Q+ R  IL+ F +G +  +V
Sbjct: 244 EEEWPEKAIIFANTKHSCETVYAWLKADGHRVGMLTGDVNQKKRQSILAEFSKGDLDFLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL IP+V HVFNFD+P+  E+Y+HRIGRT RAG  G A +   ++   ++  I
Sbjct: 304 ATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTARAGASGHAISFACEQYAYNLHEI 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           E+ I+  +   + D ++L   L K  I   +  R  +  P+  +    R+ N S QK  
Sbjct: 364 EEYIDHSIPLSHYDKTALLDDLTKPTI---HRKRNFSTGPRNRSNNSGRRPNNSYQKGR 419


>gi|332533777|ref|ZP_08409633.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036708|gb|EGI73171.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 464

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 153/386 (39%), Positives = 231/386 (59%), Gaps = 5/386 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AVL+ GY  PTPIQ + IP +++R DV   AQTGTGKTA F LP++
Sbjct: 1   MSFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLI 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G   +    R LIL PTRELA QV++N E+Y K+ +++  ++ GG+    Q ++L
Sbjct: 61  ERLSSGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR++D  N+  +  +++E+LV+DEADRMLDMGFI  I+ + + +P  RQ
Sbjct: 121 RKGVDILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++ +++  + +P  I V   ++TA+++  C  A                
Sbjct: 181 NLMFSATFSDEIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKTRKTALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  ++F   K     L   LE+      AIHGN  Q +R+K L  FK G ++++
Sbjct: 238 IRTNDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLDI ++ HV N+D+PN  E+Y+HRIGRTGRAG  G A + V  +D   +  
Sbjct: 298 VATDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGATGHAISFVTVDDAVDLYG 357

Query: 360 IEKLIEKKVDWLNGD-LSSLNPPLEK 384
           IE+ I + +     D    +NP  E+
Sbjct: 358 IERFIGELIPRAEEDGFEPINPVAER 383


>gi|300122867|emb|CBK23874.2| unnamed protein product [Blastocystis hominis]
          Length = 394

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 127/373 (34%), Positives = 198/373 (53%), Gaps = 5/373 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +GL+P ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKT  F + +L  ++ 
Sbjct: 1   MGLNPDLLRGIYAYGFEKPSAIQQRAILPIIKGRDVIAQSQSGTGKTGVFCIGVLQNIDP 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
                +    LIL PTRELA Q        G    +     +GG       ++L+ G  V
Sbjct: 61  SLMETQA---LILSPTRELAEQSQKVLLSIGDCMKVQCHACVGGKSLSDDIRRLDYGVQV 117

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           +  TPGR+ D  NR  L   NI+ILVIDE D ML+ GF   + +I   +P   Q +L SA
Sbjct: 118 VSGTPGRVYDMINRRHLRTRNIKILVIDEGDEMLNQGFKEQLYDIYRYLPPATQVVLVSA 177

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           TM  E+  ++  F+  P +I V     T E I+  FVA   +  K   L      +  T+
Sbjct: 178 TMPKEVLDMTSKFMNEPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YNNLTI 235

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              +IFCN ++ V  L   L +  F+V ++HG++ Q+ R +I+  F+ G  ++++A+D+ 
Sbjct: 236 TQAVIFCNTRRKVEWLAAKLREANFTVSSMHGDMPQKERDRIMEEFRAGNSRVLIATDVW 295

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
            RGLD+  V  V N+D+PN  E YIHRIGR+GR GR G     V  EDI  +  IE+   
Sbjct: 296 GRGLDVQQVSLVINYDLPNSRELYIHRIGRSGRFGRKGVGINFVTNEDISVLRDIEQYYS 355

Query: 366 KKVDWLNGDLSSL 378
            ++D +  +++ L
Sbjct: 356 TQIDEMPMNINDL 368


>gi|300122033|emb|CBK22607.2| unnamed protein product [Blastocystis hominis]
          Length = 408

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 127/373 (34%), Positives = 198/373 (53%), Gaps = 5/373 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +GL+P ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKT  F + +L  ++ 
Sbjct: 1   MGLNPDLLRGIYAYGFEKPSAIQQRAILPIIKGRDVIAQSQSGTGKTGVFCIGVLQNIDP 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
                +    LIL PTRELA Q        G    +     +GG       ++L+ G  V
Sbjct: 61  SLMETQA---LILSPTRELAEQSQKVLLSIGDCMKVQCHACVGGKSLSDDIRRLDYGVQV 117

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           +  TPGR+ D  NR  L   NI+ILVIDE D ML+ GF   + +I   +P   Q +L SA
Sbjct: 118 VSGTPGRVYDMINRRHLRTRNIKILVIDEGDEMLNQGFKEQLYDIYRYLPPATQVVLVSA 177

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           TM  E+  ++  F+  P +I V     T E I+  FVA   +  K   L      +  T+
Sbjct: 178 TMPKEVLDMTSKFMNEPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YNNLTI 235

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              +IFCN ++ V  L   L +  F+V ++HG++ Q+ R +I+  F+ G  ++++A+D+ 
Sbjct: 236 TQAVIFCNTRRKVEWLAAKLREANFTVSSMHGDMPQKERDRIMEEFRAGNSRVLIATDVW 295

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
            RGLD+  V  V N+D+PN  E YIHRIGR+GR GR G     V  EDI  +  IE+   
Sbjct: 296 GRGLDVQQVSLVINYDLPNSRELYIHRIGRSGRFGRKGVGINFVTNEDISVLRDIEQYYS 355

Query: 366 KKVDWLNGDLSSL 378
            ++D +  +++ L
Sbjct: 356 TQIDEMPMNINDL 368


>gi|330503492|ref|YP_004380361.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
 gi|328917778|gb|AEB58609.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
          Length = 560

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 142/371 (38%), Positives = 226/371 (60%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL P ++ A+   GY +P+PIQ + IP++L  HD+ G AQTGTGKTA+F LP+L+ 
Sbjct: 8   FAALGLHPNILAALTAVGYEEPSPIQSQAIPVILAGHDMIGQAQTGTGKTAAFALPLLSK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++  +     P+ LIL PTRELA QVA  FE Y K       + +  G P   Q K + +
Sbjct: 68  IDPAKRE---PQVLILAPTRELALQVATAFETYSKQMPGVNVVAVYGGAPMGPQLKAIRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  R + +++ I+ LV+DEAD ML +GF+  ++ I   +P +RQ++
Sbjct: 125 GAQIIVATPGRLVDHLRRDEKVLSTIQHLVLDEADEMLKLGFMDDLEIIFEAMPESRQSV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L+ P+ I++   + T   IE   +  +A       L       
Sbjct: 185 LFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVSRIEQAHLMIHADQKTNAVLRLL---E 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I F   K+  ++L  +LE +GF   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 242 VEDFDALIAFVRTKQATLDLASALEAKGFKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKVDWLN 372
           ++  +KV  + 
Sbjct: 362 RVTGQKVGEVK 372


>gi|209808966|ref|YP_002264504.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
           [Aliivibrio salmonicida LFI1238]
 gi|208010528|emb|CAQ80896.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
           [Aliivibrio salmonicida LFI1238]
          Length = 495

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 176/435 (40%), Positives = 250/435 (57%), Gaps = 10/435 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV   GY  P+PIQ++ IP V++  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAVEAQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L KG+  +    R LIL PTRELAAQV ++ EKY  N  LT  ++ GG+    Q ++L
Sbjct: 61  ERLSKGQKLKFNQVRALILTPTRELAAQVHESVEKYSVNLPLTSDVVFGGVKANPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DVL+ TPGR+LD  N+  +  + +EILV+DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 121 RKGVDVLVATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILNKLPKNRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++++++  + NP  I V T ++TAET+E            +        
Sbjct: 181 NLLFSATFSDEIRQLAKGLVNNPVEISVATRNTTAETVEQSVYVVDKTKKARVLTKL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  K  ++F   K     L  +LE++G S  AIHGN  Q +R K L+NFK G ++++
Sbjct: 238 IKDNDWKQVLVFSKTKHGANRLAKTLEEKGISSAAIHGNKSQGARTKALANFKSGQVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N D+P   E+Y+HRIGRTGRAG  GKA + V++++   + A
Sbjct: 298 VATDIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEASELFA 357

Query: 360 IEKLIEKKVDW--LNGDLSSLNPPLEKID---IAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           IE+LI+K +    L G    +  P  ++D   I      + + P  +   G  R  +N S
Sbjct: 358 IERLIQKILPRHTLEGFEPEMKVPESRLDSRPIKAKKPKKTHAPRVEHKDG-QRSGENRS 416

Query: 415 SQKSHIPLKESEKIS 429
             K            
Sbjct: 417 GHKQGAKPAPRRNTE 431


>gi|71987143|ref|NP_001022623.1| INitiation Factor family member (inf-1) [Caenorhabditis elegans]
 gi|124217|sp|P27639|IF4A_CAEEL RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Initiation factor 1
 gi|6700|emb|CAA78102.1| unnamed protein product [Caenorhabditis elegans]
 gi|532818|gb|AAA21170.1| Initiation factor protein 1, isoform a, confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 402

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 198/377 (52%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L  +++  +   G+ KP+ IQ + I       DV   AQ+GTGKTA+F + +L 
Sbjct: 30  SFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQ 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+    L++ PTRELA Q+       G+  N+ +   IGG       +KLE 
Sbjct: 90  RIDHEDPHVQA---LVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEA 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L  + I++ V+DEAD ML  GF   I  +   +P   Q +
Sbjct: 147 GIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMPQDVQVV 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+  V+  F++NP RI V     T E I   ++       K   L      +
Sbjct: 207 LLSATMPSEVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCDL--YN 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IFCN ++ V  L   + +  F+V  +HG++DQ  R  I+  F+ G+ ++++ 
Sbjct: 265 VVNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLIT 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V + D + +  IE
Sbjct: 325 TDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEIE 384

Query: 362 KLIEKKVDWLNGDLSSL 378
                +++ +   ++ L
Sbjct: 385 SYYTTQIEEMPESIADL 401


>gi|114047740|ref|YP_738290.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113889182|gb|ABI43233.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 487

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 157/459 (34%), Positives = 244/459 (53%), Gaps = 17/459 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F+ LGL   +V AV + GY  PTPIQ K IP +L   +V   AQTGTGKTASFVLP +
Sbjct: 1   MPFSQLGLHSALVKAVTELGYTTPTPIQTKAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +  + R +  R +IL PTRELA QV +N  +Y K   LT   + GG+    Q K+L
Sbjct: 61  HRFADAPKIRPKRVRAIILTPTRELALQVEENINQYAKYLPLTAMAMYGGVDAAPQKKRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + + +LV+DEADRMLDMGFI  I +I   +P  RQ
Sbjct: 121 IEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINSIIEKLPEQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++ ++++ + +   IE++     +    H           K + L   L
Sbjct: 181 NLLFSATLSKQVKALAKSAIPDAIEIEISR---KSAASTHIDQWLTTVDKDKKSALLSHL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++     +IF   K     L   LEK+G    A H    Q  R ++L +FK G +  +
Sbjct: 238 IQENNWSQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLIDFKAGKVSFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +A+RG+DI  +  V N+D+P+ A++YIHRIGRTGRAG  G+A + V+K+D +++ A
Sbjct: 298 VATGVASRGIDIDALARVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           IE+ +   +  +  +++   P    P+  ++    + +      P K T    + + YSS
Sbjct: 358 IERRLGHVI--VRREIAGFEPKKIVPISILNFVPKSASTTERK-PHKPTDTSAQPRPYSS 414

Query: 416 QK------SHIPLKESEKISKLQQDIQENDADSLGFRGN 448
            K      +      S K +   +  +       G R +
Sbjct: 415 GKPGTFEATQAKKHRSAKATPAPKAPKTGTDSRSGTRSD 453


>gi|322389137|ref|ZP_08062700.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           903]
 gi|321144179|gb|EFX39594.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           903]
          Length = 523

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 141/373 (37%), Positives = 228/373 (61%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS +++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++       + + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDVDN---TVIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +++IE L++DEAD ML+MGF+  I+ I S VP TRQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHIETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + ++++   F++ P+ +++     T + ++  ++                  
Sbjct: 178 LLFSATMPEAIKRIGVQFMKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKTGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  +  
Sbjct: 355 ENLTKKRMKGMKP 367


>gi|296190482|ref|XP_002743273.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Callithrix
           jacchus]
          Length = 437

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 129/373 (34%), Positives = 201/373 (53%), Gaps = 5/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVTAQSQSGTGKTATFNISVLQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 99  CLDI---QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHTCIGGTNVGEDIRKLDY 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D      L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 156 GQHVVAGTPGRVFDMIRGRSLRTCAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 216 LISATLPHEILEMTNKFMTDPVRILVKRDKLTLEGIKQFFVAVEREEWKFDTLCDL--YD 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V +IHG++ Q+    I+  F+ GT Q++++
Sbjct: 274 TLTITQVVIFCNTKRKVDWLTEKMREANFTVSSIHGDMPQKEWESIMKEFRAGTSQVLIS 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  +  +D+ N  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 334 TDVWARGLDVPQVSLIITYDLTNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 393

Query: 362 KLIEKKVDWLNGD 374
           +    ++D +  +
Sbjct: 394 QYYSTQIDEMPMN 406


>gi|78067127|ref|YP_369896.1| DEAD/DEAH box helicase-like [Burkholderia sp. 383]
 gi|77967872|gb|ABB09252.1| DEAD/DEAH box helicase-like protein [Burkholderia sp. 383]
          Length = 527

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 168/403 (41%), Positives = 232/403 (57%), Gaps = 17/403 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+  ++ A+ + GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 34  TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q 
Sbjct: 94  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 153

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG +VLI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 154 AELRRGVEVLIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 213

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +            +   +  
Sbjct: 214 ERQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQL 273

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                   +K  I+FCN K     L  +LE+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 274 L---RDRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEI 330

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 331 EALVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 390

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           +  IEKLI++ ++       +L+ P      A+H H  + N  
Sbjct: 391 LADIEKLIKRPLE---MQTLALDKP------ARHRHDERGNDR 424


>gi|33240544|ref|NP_875486.1| superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33238072|gb|AAQ00139.1| Superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 603

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 220/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G S  ++  + + GY +PTPIQ  +IP ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 53  FEGFGFSEALLKTLKNKGYEEPTPIQKASIPELMLGRDLLGQAQTGTGKTAAFALPLLER 112

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKLER 121
           +    ++ R P+ L+L PTRELA QVA++F+ Y + +     L + G   F +Q   L+R
Sbjct: 113 I---NSKERNPQVLVLTPTRELAMQVAESFKAYSEGHANINILAVYGGSDFRSQIYSLKR 169

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G ++++ TPGR++DH  +G L  ++++ LV+DEAD ML MGFI  I+ I   +P  RQ +
Sbjct: 170 GVEIIVGTPGRVMDHIRQGTLNQDSLQCLVLDEADEMLRMGFIDDIEWILEQLPNERQMV 229

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++K+S+ +L++P  I   T  +  +  +          +     + + +  
Sbjct: 230 LFSATMPPEIRKLSKRYLRDPAEI---TIKAKKKEAQLIRQHYITVQNSYKLEVLRRVLE 286

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  IIF   K   + L  SLE    +V  ++G++ Q  R + +   ++G I ++VA
Sbjct: 287 LNYGEGVIIFARTKAITLKLAESLEASNHNVAVLNGDVPQNLRERTVERLRQGGINILVA 346

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N+D+P  +E Y+HRIGRTGRAGR G+A   ++  +  +++ +E
Sbjct: 347 TDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFISPRERSYLNNLE 406

Query: 362 KLIEKKVDWLN 372
           + + + ++ + 
Sbjct: 407 RAVGQSIERME 417


>gi|124383654|ref|YP_001028341.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
 gi|124291674|gb|ABN00943.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
          Length = 488

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 163/402 (40%), Positives = 234/402 (58%), Gaps = 12/402 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                   + R+  R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q 
Sbjct: 61  QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            ++     
Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+
Sbjct: 241 ---IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI---GRTGRAGRHGKAFTLVAKED 353
           Q++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRI   GRTGRAG +G+A +LV  ++
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRTGRAGANGEAVSLVCVDE 357

Query: 354 IKHIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHA 393
            + +  IE+LI++++    + G     N   E I       A
Sbjct: 358 KQLLRDIERLIKREIPQQVIPGFEPDPNAKPEPIQRRGQRGA 399


>gi|331092062|ref|ZP_08340893.1| hypothetical protein HMPREF9477_01536 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402263|gb|EGG81834.1| hypothetical protein HMPREF9477_01536 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 528

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 136/369 (36%), Positives = 212/369 (57%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LG+ P++  AV   G+ + +PIQ K IP++L+  D+ G AQTGTGKTA+F +P+L
Sbjct: 4   IKFEQLGICPEIQKAVKYMGFEEASPIQAKAIPVILEGKDIIGQAQTGTGKTAAFGIPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             +     +++     +L PTRELA QVAD      K  +    L I  G     Q + L
Sbjct: 64  QKVNPKNKKLQGI---VLCPTRELAIQVADEIRNLAKYMHGIKVLPIYGGQEIVKQIRSL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  ++I TPGR++DH  R  + M  +  +V+DEAD ML+MGF   I+ I   VP  RQ
Sbjct: 121 KNGTQIIIGTPGRVMDHMRRKTIKMEQVHTVVLDEADEMLNMGFREDIETILEGVPEERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + ++++ F +  + I+V     T   IE  +        K    +   L
Sbjct: 181 TVLFSATMPKAIMEITKKFQKKAEVIKVTKKELTVPNIEQFYYEVKP---KNKEEVLARL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T K  ++FCN KK V  L  SL  +G+    +HG++ Q  R +++  F+ G   ++
Sbjct: 238 LDIYTPKLSVVFCNTKKQVDLLVTSLLGRGYFAAGLHGDMKQVQRDRVMQGFRSGKTDIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V  VFN+D+P   E Y+HRIGRTGRAGR G++F+ V+ +++  +  
Sbjct: 298 VATDVAARGIDVDEVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKLKE 357

Query: 360 IEKLIEKKV 368
           I++  + K+
Sbjct: 358 IQRYCKTKI 366


>gi|307705294|ref|ZP_07642156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
 gi|307621081|gb|EFO00156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
          Length = 520

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 145/373 (38%), Positives = 226/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIRT---EEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP +RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPESRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFATMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|242787406|ref|XP_002481000.1| RNA helicase (Dbp), putative [Talaromyces stipitatus ATCC 10500]
 gi|218721147|gb|EED20566.1| RNA helicase (Dbp), putative [Talaromyces stipitatus ATCC 10500]
          Length = 543

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 131/380 (34%), Positives = 208/380 (54%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ KPT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 117 TFDEAGFPNYVLSEVKAQGFAKPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 176

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      +    P  LIL PTRELA Q+     K+G++  +    + GG+P   Q + L
Sbjct: 177 HINAQPLLSPGDGPIVLILAPTRELAVQIQTEISKFGRSSRIRNTCVYGGVPKGPQIRDL 236

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 237 SRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQ 296

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T ++SAT   E+++++ +FL +  ++ + +   +A       V   + + K+  +++ L 
Sbjct: 297 TCMWSATWPKEVRQLASDFLNDFIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLE 356

Query: 240 QSQDTMKNGIIFCNQKKNV-VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  D  KN  +     K V  ++   L + G+   +IHG+  Q  R  +L  FK G   +
Sbjct: 357 KIMDDRKNKCLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLQEFKNGKSPI 416

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A T    ++ K   
Sbjct: 417 MVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQAR 476

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    ++  L  +
Sbjct: 477 DLVTILSEAKQQIDPRLHEM 496


>gi|149012680|ref|ZP_01833656.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP19-BS75]
 gi|168483538|ref|ZP_02708490.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1873-00]
 gi|169832933|ref|YP_001694988.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6]
 gi|194396853|ref|YP_002038215.1| ATP-dependent RNA helicase [Streptococcus pneumoniae G54]
 gi|225857209|ref|YP_002738720.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031]
 gi|225859340|ref|YP_002740850.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585]
 gi|147763280|gb|EDK70218.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP19-BS75]
 gi|168995435|gb|ACA36047.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6]
 gi|172043152|gb|EDT51198.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1873-00]
 gi|194356520|gb|ACF54968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae G54]
 gi|225721382|gb|ACO17236.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585]
 gi|225724473|gb|ACO20325.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031]
          Length = 524

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 147/373 (39%), Positives = 224/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIRT---EEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + NIE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQNIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|322711331|gb|EFZ02905.1| ATP-dependent RNA helicase dbp-2 [Metarhizium anisopliae ARSEF 23]
          Length = 545

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 129/380 (33%), Positives = 207/380 (54%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 137 TFDEAGFPRYVLDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 196

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+G++  +    + GG+P   Q + L
Sbjct: 197 HINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGRSSRIRNTCVYGGVPKGPQIRDL 256

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 257 SRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 316

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E++ ++ +F  +  ++ + +   +A       V   +   K+  +++ L 
Sbjct: 317 TLMYSATWPKEVRAMAADFQTDFIQVNIGSMDLSANHRITQIVEVVSDMEKRDRMIKHLE 376

Query: 240 QSQDTMKNGIIFCNQKKNV-VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           Q  +  +N I+     K V  ++   L + G+   +IHG+  Q  R  +L  FK G   +
Sbjct: 377 QVMENKENKILIFVGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPI 436

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ ++ HV N+D PN +E+YIHRIGRTGRAG  G A T    ++ K   
Sbjct: 437 MVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNQKQAR 496

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++++    ++  L+ +
Sbjct: 497 ELVNVLQEAKQKIDPRLAEM 516


>gi|322700629|gb|EFY92383.1| ATP-dependent RNA helicase dbp-2 [Metarhizium acridum CQMa 102]
          Length = 552

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 129/380 (33%), Positives = 207/380 (54%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 137 TFDEAGFPRYVLDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 196

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+G++  +    + GG+P   Q + L
Sbjct: 197 HINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGRSSRIRNTCVYGGVPKGPQIRDL 256

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 257 SRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 316

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E++ ++ +F  +  ++ + +   +A       V   +   K+  +++ L 
Sbjct: 317 TLMYSATWPKEVRAMAADFQTDFIQVNIGSMDLSANHRITQIVEVVSDMEKRDRMIKHLE 376

Query: 240 QSQDTMKNGIIFCNQKKNV-VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           Q  +  +N I+     K V  ++   L + G+   +IHG+  Q  R  +L  FK G   +
Sbjct: 377 QVMENKENKILIFVGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPI 436

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ ++ HV N+D PN +E+YIHRIGRTGRAG  G A T    ++ K   
Sbjct: 437 MVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNQKQAR 496

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++++    ++  L+ +
Sbjct: 497 ELVNVLQEAKQKIDPRLAEM 516


>gi|189465693|ref|ZP_03014478.1| hypothetical protein BACINT_02054 [Bacteroides intestinalis DSM
           17393]
 gi|189433957|gb|EDV02942.1| hypothetical protein BACINT_02054 [Bacteroides intestinalis DSM
           17393]
          Length = 428

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 130/371 (35%), Positives = 217/371 (58%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+ +V+ A+    + + TPIQ K+IP++L+  D+  +AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELQLNDQVLDALEAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
             L +G         +++ PTRELA Q+    E +     ++   + GG     FE Q K
Sbjct: 61  NKLSEGNHPEDAINCIVMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLMLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++   L NP  +++       +       A Y  Y  +   + +
Sbjct: 181 RQTIMFSATMPAKIQQLANTILNNPAEVKLAVSRPAEKI----VQAAYVCYENQKLGIIR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L ++ T +  IIF + K  V  +  +L+    +V  +H +++Q  R +++  FK G + 
Sbjct: 237 SLFAEQTPERVIIFASSKLKVKEVTKALKMMKLNVGEMHSDLEQAQREEVMHEFKAGRVN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T + +++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFINEKEQSNF 356

Query: 358 DAIEKLIEKKV 368
             IE  +EK++
Sbjct: 357 KQIENFLEKEI 367


>gi|118082784|ref|XP_416260.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
           [Gallus gallus]
          Length = 655

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 150/451 (33%), Positives = 228/451 (50%), Gaps = 18/451 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+ A++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 92  FHQCSFPQYVMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 151

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 152 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 211

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 212 RGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 271

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FLQ+  +I V     +A       V    +  K   L+Q + +
Sbjct: 272 LMWSATWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 331

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 332 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 391

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    
Sbjct: 392 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 451

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK------NNPIPQKSTGFDRRKKNY 413
           + K++E+    +N  L  L              +R       NNP        DRR +  
Sbjct: 452 LIKVLEEANQAINPKLMQLVDHRGGGGGGGGGRSRYRTSSSVNNPNLMYQEECDRRLRG- 510

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLG 444
                   +KE  + S   +D +  D+ + G
Sbjct: 511 --------VKEGRRDSGGFRDRERGDSYANG 533


>gi|145589523|ref|YP_001156120.1| DEAD/DEAH box helicase domain-containing protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047929|gb|ABP34556.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 426

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 173/429 (40%), Positives = 244/429 (56%), Gaps = 10/429 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGLS  ++ A+ + GY  PTPIQ K+IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MLFTDLGLSEPILRAIAEEGYTSPTPIQAKSIPAVLKGGDLLAAAQTGTGKTAGFTLPIL 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 K  +  R+ R LIL PTRELAAQV ++   YGK   L   ++ GG+    Q K 
Sbjct: 61  QRLSSIKASSGKRVLRVLILTPTRELAAQVQESVVTYGKYTGLKSTVIFGGVGANPQIKA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +  G D+L+ TPGR+LD  ++  + +N+IEILV+DEADRMLDMGF+  I+ I + +P  R
Sbjct: 121 IAAGLDILVATPGRLLDLMSQKCVSLNDIEILVLDEADRMLDMGFLRDIKKILAALPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT + E++ +++  L  P+ IEV   +S  E I                     
Sbjct: 181 QNLLFSATFSTEIKALADGLLNKPELIEVARSNSANEAIAQLIHPVDRNQKHPL---LAH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   +  K  ++F   K     L   LEK G +  AIHGN  Q +R K L++FK G +  
Sbjct: 238 LIKSNDWKQVLVFTRTKHGANKLVTQLEKDGITSMAIHGNKSQTARTKALADFKAGKLTA 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV N+D+PN +E+Y+HRIGRTGRAG +G A +LV  ++ + + 
Sbjct: 298 LVATDIAARGIDIDQLPHVVNYDLPNVSEDYVHRIGRTGRAGSNGVAVSLVCVDEHQMLR 357

Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            IEKLI++K+  + + G     N   + I +    H +   P    S G   +K   +  
Sbjct: 358 DIEKLIKQKLPQEVIAGFEPDPNAIAQPIQLRSQQHQQSRRPKVAGSGGAPAKK---APA 414

Query: 417 KSHIPLKES 425
           K   P K S
Sbjct: 415 KRSSPPKRS 423


>gi|117922031|ref|YP_871223.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117614363|gb|ABK49817.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 619

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 137/372 (36%), Positives = 214/372 (57%), Gaps = 8/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ A+ + GY  PTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L 
Sbjct: 7   TFRELGLSENLLRALDELGYENPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            +        +P+ L+L PTRELA QVA+ F  Y K       L I  G     Q   L+
Sbjct: 67  KVTSQ----AVPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNALK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG L +  ++ LV+DEAD ML MGFI  I+ I    P  RQ 
Sbjct: 123 RGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQRQL 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +++++V+   L++   I +    +T ++IE  FV        +  +    ++
Sbjct: 183 ALFSATMPEQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVE 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + +   IIF   + + V L   LE +G++   +HG+++Q++R + +   K G + +++
Sbjct: 243 NTEGI---IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +GHV N+D+P   E Y+HRIGRTGRAGR G A   V   +++ +  I
Sbjct: 300 ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTI 359

Query: 361 EKLIEKKVDWLN 372
           E+    ++  + 
Sbjct: 360 ERATNSRISPMK 371


>gi|220933542|ref|YP_002512441.1| DEAD/DEAH box helicase domain-containing protein [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219994852|gb|ACL71454.1| DEAD/DEAH box helicase domain-containing protein [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 432

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 133/417 (31%), Positives = 207/417 (49%), Gaps = 7/417 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+   L   V   + DAG+ + TPIQ   +P+ L+ HDV G AQTGTGKTA+F++    
Sbjct: 16  SFSQFDLPDSVRQGIEDAGFSRCTPIQALALPIALKGHDVAGQAQTGTGKTAAFLIAAFN 75

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +    R LIL PTRELA Q+  +    G +  L + L  GG  ++ Q +
Sbjct: 76  RLLRDPAPAERKQNQIRALILAPTRELAIQIHKDAVTLGAHTGLKLGLAYGGTDYDKQRQ 135

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G D+LI TPGRI+D+F +    M  ++++V+DEADRM D+GFI  I+ +   +   
Sbjct: 136 QLVDGVDILIGTPGRIIDYFKQKVFDMRVVQVMVLDEADRMFDLGFIKDIRFLLRRMTPP 195

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            +      + T   + +   +       +V T            V  Y    +K  L   
Sbjct: 196 TERQSMLFSATLSHRVMELAYEHMNNPEKVQTRDEQVTAQRVRQVVYYPANPEKIPL-LL 254

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +      ++F N K     L   L+     V  + G++ Q+ R ++L  F+    Q
Sbjct: 255 GLMKRIGPSRSMVFVNTKHMADKLEAWLKGNDIKVAVLSGDVPQQKRQRLLKQFENDEFQ 314

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IPDV HVFNFD+P   E+Y+HRIGRTGRAG  G A +   ++   ++
Sbjct: 315 VLVATDVAARGLHIPDVSHVFNFDLPQSGEDYVHRIGRTGRAGAEGDAVSFACEDSAFYL 374

Query: 358 DAIEKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             IE+ I  K++   ++ +L     P  K +I +   A+       K     RR+++
Sbjct: 375 PEIEQYIGFKIEAGAIDPELLVKPAPPAKREIRERLGAQNRGDRGGKRASPRRRREH 431


>gi|289208213|ref|YP_003460279.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix]
 gi|288943844|gb|ADC71543.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix]
          Length = 441

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 157/415 (37%), Positives = 235/415 (56%), Gaps = 11/415 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+  ++ A+  AGY  PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L 
Sbjct: 6   SFADLGLAESLLRALDQAGYKTPTPIQAQAIPEVLKGGDLLAAAQTGTGKTAGFTLPILQ 65

Query: 62  ILEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L  G+    +   PR LIL PTRELAAQV D+   YG++ +L    + GG+    Q K 
Sbjct: 66  RLTTGQTPERKPGRPRALILTPTRELAAQVHDSVRTYGRHLSLKSMTIFGGVNMNPQIKA 125

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L    D+++ TPGR+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ +  L+P  R
Sbjct: 126 LRGPMDIVVATPGRLLDHAGQKTIDLSGVEILVLDEADRMLDMGFIRDIRRLIGLMPKQR 185

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT + E++ ++ + L  P  ++V   ++ AET++       +   ++       
Sbjct: 186 QNLMFSATFSGEIRTLASSLLNKPAEVDVAPRNTAAETVQQTVHLVESSRKRELLSHL-- 243

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               +     ++F   K     L   L + G    AIHGN  Q +R K L  FK G + +
Sbjct: 244 -IRSNDWGQVLVFTRTKHGANRLAQKLTQDGVPSEAIHGNKSQAARTKALKQFKTGAVPV 302

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV  E++K + 
Sbjct: 303 LVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSVGAALSLVDGEEMKLLK 362

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            IE+LI++ ++ +  D  +   P      A   + ++    P       + +++ 
Sbjct: 363 GIERLIQRPIERIETDGFATPKP-----AANDGNGQRRGGKPGGGARNGKPRQSR 412


>gi|221068202|ref|ZP_03544307.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
 gi|220713225|gb|EED68593.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
          Length = 613

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 165/458 (36%), Positives = 259/458 (56%), Gaps = 21/458 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AV + GY  PTPIQ + IPLVL  HD+   AQTGTGKTA+F LPML
Sbjct: 1   MTFEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L  G A          RTL+L PTRELAAQV +N   Y K  ++T  ++ GG+  + Q
Sbjct: 61  QRLASGTAPKNKFGGKGIRTLVLTPTRELAAQVEENLRGYAKYLDITSTVIFGGVGMKPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             ++E+G DVL+ TPGR+LD   +G + ++ +E+L++DEADRMLDMGFI  ++ + +LVP
Sbjct: 121 IARIEKGVDVLVATPGRLLDLAGQGFMDLSTVEMLILDEADRMLDMGFIHDVKKVLALVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE+++++   L+NP+ I+V   ++T + I+           K+    
Sbjct: 181 KDKQSLLFSATFSDEIRELANGLLRNPQSIQVTPRNTTVQRIKQVIHPVGRGKKKQV--- 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              +  ++     ++F   K    N+   L K G S  A+HGN  Q +R + L  FK G 
Sbjct: 238 LLHIIQENNWSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGE 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VA+D+AARG+DI ++ +V N+++PN +E+Y+HRIGRTGRAGR G A +LV  ++  
Sbjct: 298 LRALVATDIAARGIDIDELPNVVNYEIPNISEDYVHRIGRTGRAGREGNAVSLVCMDEEG 357

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +  IE+  ++++            P++ I+           PI               S
Sbjct: 358 FMMDIERFTKQEI------------PVQPIEGFGPEEGEIAEPIAMGRQTLWGGAGKPPS 405

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFM 453
           +       ++ +   +++ I+ N A + G  G  PA  
Sbjct: 406 RDVMQAAAKAARQEMMER-IRSNKAPTGGRGGRRPAAG 442


>gi|110833595|ref|YP_692454.1| DEAD-box ATP dependent DNA helicase [Alcanivorax borkumensis SK2]
 gi|110646706|emb|CAL16182.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax
           borkumensis SK2]
          Length = 459

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 151/371 (40%), Positives = 226/371 (60%), Gaps = 4/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL   +  AV + GY  P+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MHFSDLGLCDALQAAVAERGYDTPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G   R    R L+L PTRELAAQVA++   YGKN  LT  ++ GG+    Q ++L
Sbjct: 61  ERLRTGSPARNNQVRALVLTPTRELAAQVAESVATYGKNLPLTSTVVFGGVKINPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR+LD + +  +  +++E+L++DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 121 RGGCDVLVATPGRLLDLYQQNAVKFDHLEVLILDEADRMLDMGFIHDIRKILAKLPPKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT + E++ +++  + +P  ++++  ++T E +            K+   L   L
Sbjct: 181 NLMFSATFSSEIRALAKGLVNDPVEVDISPRNTTTELV---TQWIAPVDKKRKPALLTHL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++     ++F   K     L   LE  G    AIHGN  Q +R + L++FK G ++ +
Sbjct: 238 IQENGWFQVLVFSRTKHGANKLAKQLEANGIEAAAIHGNKSQNARTRALADFKSGKVRAL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N D+PN  E+Y+HRIGRTGRAG  G+A +LV+ ++ + +  
Sbjct: 298 VATDIAARGLDIEQLPQVVNVDLPNVPEDYVHRIGRTGRAGATGQAISLVSADEFQQLKD 357

Query: 360 IEKLIEKKVDW 370
           IE+L +++++ 
Sbjct: 358 IERLTQQQLER 368


>gi|309779776|ref|ZP_07674531.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
 gi|308921353|gb|EFP66995.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
          Length = 404

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 154/378 (40%), Positives = 229/378 (60%), Gaps = 11/378 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY +PTPIQ + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 12  MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILRGGDLLAGAQTGTGKTAGFTLPLL 71

Query: 61  TILEKGRARVRMPRTLIL--------EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
             L   +         +          PTRELAAQV ++   YGK   L   ++ GG+  
Sbjct: 72  HRLSAAQPNKVQTPQGMRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 131

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q   L+RG D+++ TPGR+LDH  +  + +++IE+LV+DEADRMLDMGFI  I+ I +
Sbjct: 132 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 191

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           ++P  RQ LLFSAT +D+++++++  L  P  IEV   ++TAET+E        +  ++ 
Sbjct: 192 ILPAKRQNLLFSATFSDDIRELADRLLDKPALIEVARRNTTAETVEQRIYPVDRERKREL 251

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                 L   +     ++F   K     L   L + G    AIHGN  Q +R + L+ FK
Sbjct: 252 ---LAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALTEFK 308

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT++++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  +
Sbjct: 309 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 368

Query: 353 DIKHIDAIEKLIEKKVDW 370
           +   +  IE+LI++++  
Sbjct: 369 EHGLLRDIERLIKRELPR 386


>gi|323342311|ref|ZP_08082543.1| DEAD/DEAH family ATP-dependent RNA helicase [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463423|gb|EFY08617.1| DEAD/DEAH family ATP-dependent RNA helicase [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 594

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 147/369 (39%), Positives = 219/369 (59%), Gaps = 6/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L  ++V AV + GY +PT IQ + IP++L  HD+   +QTGTGKTA+F LPML
Sbjct: 17  MTFKELELEEEIVRAVTEKGYEEPTDIQSQAIPILLGNHDLLAQSQTGTGKTAAFGLPML 76

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
           ++ + G  +     +LIL PTREL  QVA+    + K    + +A + GG P + Q + L
Sbjct: 77  SLTQPGDKK--RTNSLILCPTRELCMQVAEEMRSFSKYKQGVNIACVYGGSPIDKQIRDL 134

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGAD+++ TPGR++DH  R  + +++   +V+DEAD ML+MGFI  I+ I S +P  RQ
Sbjct: 135 KRGADIVVATPGRLMDHIRRKTIRLDDCRHIVLDEADEMLNMGFIEDIEEIFSFLPEERQ 194

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSATM  E+ K+SE FL  P+RI ++  + T   I+  +    ++      +    L
Sbjct: 195 FAFFSATMPKEIVKLSEKFLVEPERITLSRNNLTVSRIKQIYYTVESRDKVDLTIQLLQL 254

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                     IFCN KK V  L   L K GF    +HG++ Q  R  ++S FK+G + ++
Sbjct: 255 HKTSGTM---IFCNTKKMVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRFKKGMVSVL 311

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+  +  V N+D+P   E Y+HRIGRTGRAG+ G A TLV++     I  
Sbjct: 312 IATDVAARGIDVDSMDVVINYDIPQELEYYVHRIGRTGRAGKEGLAITLVSRRQRYAIKQ 371

Query: 360 IEKLIEKKV 368
           IE+L    +
Sbjct: 372 IERLSNSTI 380


>gi|187927522|ref|YP_001898009.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12J]
 gi|187724412|gb|ACD25577.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
          Length = 560

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 154/378 (40%), Positives = 229/378 (60%), Gaps = 11/378 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS K+V AV + GY +PTPIQ + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILRGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMPRTLIL--------EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
             L   +         +          PTRELAAQV ++   YGK   L   ++ GG+  
Sbjct: 61  HRLSAAQPNKVQTPQGMRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q   L+RG D+++ TPGR+LDH  +  + +++IE+LV+DEADRMLDMGFI  I+ I +
Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           ++P  RQ LLFSAT +D+++++++  L  P  IEV   ++TAET+E        +  ++ 
Sbjct: 181 ILPAKRQNLLFSATFSDDIRELADRLLDKPALIEVARRNTTAETVEQRIYPVDRERKREL 240

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                 L   +     ++F   K     L   L + G    AIHGN  Q +R + L+ FK
Sbjct: 241 ---LAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALTEFK 297

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            GT++++VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRTGRAG  G+A +LV  +
Sbjct: 298 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 357

Query: 353 DIKHIDAIEKLIEKKVDW 370
           +   +  IE+LI++++  
Sbjct: 358 EHGLLRDIERLIKRELPR 375


>gi|153835022|ref|ZP_01987689.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
 gi|148868543|gb|EDL67640.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
          Length = 430

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 158/408 (38%), Positives = 238/408 (58%), Gaps = 15/408 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P+VV A+ + GY K TPIQ K IP+  + HD+   AQTGTGKTA+F LPM+
Sbjct: 1   MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMI 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +             I+ PTRELA Q+ADN + Y K  +L+VA + GG    +Q   
Sbjct: 61  QQLLESGRSASRKTARALIMAPTRELAEQIADNIKAYTKYTDLSVAAIFGGRKMSSQVTA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H  +G + + NIE LV DEADR+LDMGFI  ++ I   V    
Sbjct: 121 LEGGVDILVATPGRLEEHIEQGNVSVANIEFLVFDEADRILDMGFIHAVRKIMMDVDTDP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L  ++++ L+ PKRIEV   ++TA+TI H       +   +       
Sbjct: 181 QIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAQTIAHVLYPVDQERKTELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   K  ++F N K+   ++   L+  G      HG+  Q +R + L  FK G  ++
Sbjct: 239 -IGRKNWKQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V +E+   + 
Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVV 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPP-----LEKIDIA---QHNHARKNNP 398
            +E LI++++  +  +L+   P      +EK++     ++   R+NNP
Sbjct: 358 QVENLIQQRIRRI--ELAGYEPKQRESYIEKLNSKPAFKNRQGRRNNP 403


>gi|189499873|ref|YP_001959343.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium
           phaeobacteroides BS1]
 gi|189495314|gb|ACE03862.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeobacteroides
           BS1]
          Length = 418

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 157/412 (38%), Positives = 235/412 (57%), Gaps = 8/412 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ + L   ++ A+ + GY  PTPIQ + IP++L+  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MGFSSIDLIDPILQALREEGYSSPTPIQAQAIPMILEGRDLLGCAQTGTGKTAAFAIPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 K   + +  R L++ PTRELA Q+ D+F  YG++  LT  ++ GG+    Q   
Sbjct: 61  QLLHARKTNEKKKKIRALVVTPTRELAMQIGDSFSAYGRHTGLTNQVIFGGVNQNPQTAS 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+++ TPGR+LD  N+G L + ++EILV+DEADRMLDMGFI  I+ I + +P  +
Sbjct: 121 LRKGVDIVVATPGRLLDLMNQGHLHLRDVEILVLDEADRMLDMGFIHDIRKILAALPQKK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+ +++   L+NP ++ V   SST +TI             +  +    
Sbjct: 181 QSLFFSATMPTEIVRLAGTILKNPAKVSVTPVSSTVDTIRQAVYFVDKGNKNRLLVHLL- 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               + +K  ++F   K     +   L+K      AIHGN  Q +R + L NFKE T ++
Sbjct: 240 --KGEEIKTALVFTRTKHGADKVVKFLQKHAVRAEAIHGNKGQGARQRALKNFKEQTTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+ HV NFD+ N AE Y+HRIGRTGRAG  G A +     + +++ 
Sbjct: 298 LVATDIAARGIDVDDLEHVINFDMSNVAETYVHRIGRTGRAGAKGTALSFCDAGEKEYLR 357

Query: 359 AIEKLIEKK---VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
            +EKLI KK   +D     L+  NP    +   + N  R       KS    
Sbjct: 358 DVEKLIAKKIPDIDHHPFPLTDHNPVKLPLQQGRRNGGRSAEKFSAKSNAKR 409


>gi|253999448|ref|YP_003051511.1| DEAD/DEAH box helicase domain-containing protein [Methylovorus sp.
           SIP3-4]
 gi|313201470|ref|YP_004040128.1| dead/deah box helicase domain-containing protein [Methylovorus sp.
           MP688]
 gi|253986127|gb|ACT50984.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. SIP3-4]
 gi|312440786|gb|ADQ84892.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688]
          Length = 459

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 158/452 (34%), Positives = 250/452 (55%), Gaps = 9/452 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+P+++ A+ + GY  PTPIQ + IP+VLQ HD+   AQTGTGKTA+F LP+L  
Sbjct: 8   FADLGLAPEILKALEEFGYTVPTPIQAQAIPVVLQGHDLMAGAQTGTGKTAAFSLPLLQK 67

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L    +    P        IL PTRELA QV ++ + Y K+  L   ++ GG+  + Q  
Sbjct: 68  LLPQASSSASPARHPVRALILTPTRELAIQVEESVKVYAKHTALRSLVVFGGVDIKTQTP 127

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +G ++L+ TPGR+LDH  +  + +  +++L++DEADRMLDMGF+P ++ I +L+P  
Sbjct: 128 SLMKGVEILVATPGRLLDHVEQRTVQLGQVQMLILDEADRMLDMGFMPDLKRILALLPKK 187

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ L+FSAT +++++K+SE FL NPK IEV   ++ ++ +                    
Sbjct: 188 RQNLMFSATFSNDIKKLSEEFLTNPKLIEVARSNAASDKVTQKVYQLDKDSKDSFLAKLL 247

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               +   +  I+F   K     L   L ++G +  AIHG+  Q+ RM+ L  FK+G + 
Sbjct: 248 ---LESNSEQTIVFTKTKLTASRLARQLVREGIAADAIHGDKSQQERMQALEAFKQGKVT 304

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI  +  V NF++P+  E+Y+HRIGRTGRAG  G A +LV  E+ K++
Sbjct: 305 TLVATDVAARGLDIDQLPMVINFELPSAPEDYVHRIGRTGRAGASGTAISLVCPEEEKYL 364

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IEKLI++++      ++       +        +    P   +S    R+ ++    K
Sbjct: 365 KEIEKLIKREIPRETAVVAERPRERAREAREPRADSADRKPSAPRSPA-PRKNQDPWFDK 423

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRGNM 449
            + P   +E    +     +   +     G +
Sbjct: 424 PYEPSGNAEVKQSMGLARNKQKKEVAALLGGL 455


>gi|125623238|ref|YP_001031721.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492046|emb|CAL96974.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300069989|gb|ADJ59389.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 551

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 151/384 (39%), Positives = 231/384 (60%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  +V  + + GY +PTPIQ +TI L L+  DV G AQTGTGKTA+F LP +
Sbjct: 1   MKFSELGLSEGIVKTLTEIGYEQPTPIQEETIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +    A     + L++ PTRELA Q  +   ++GK+  L V  + GG   E Q K L+
Sbjct: 61  EKI---NAENPAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIKGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR++D   R  + ++ +E L++DEAD ML+MGF+  I  I    P  RQT
Sbjct: 118 AGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  +++K+   F++NP+ I++     TA+ I+  FV T          +   L 
Sbjct: 178 LLFSATMPADIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKTKEFEK---FDVLTRLL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +G+    +HG++DQ  R+ +L +FK G I ++V
Sbjct: 235 DVERPELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++ AI
Sbjct: 295 ATDVAARGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           EKL  K       ++  L PP ++
Sbjct: 355 EKLTNK-------EMKGLKPPTKE 371


>gi|294139619|ref|YP_003555597.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293326088|dbj|BAJ00819.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 435

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 161/440 (36%), Positives = 245/440 (55%), Gaps = 16/440 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P+++ A+ + GY K TP+Q + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFAPEILRAISECGYQKMTPVQQEAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       +       IL PTRELA+Q+A+N   Y K  +++V  + GG+  E Q +K
Sbjct: 61  QKIFDNPMETQRSNARALILTPTRELASQIAENISDYSKYMDVSVLTIYGGVKLETQAQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RG D+++ TPGR+L+H     L ++N++ LV+DEADRMLDMGFI  IQ I   V   R
Sbjct: 121 LKRGTDIIVATPGRLLEHLQACNLNLSNVDFLVLDEADRMLDMGFISDIQKIMQAVNKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  ++K++ + L  PK I +N+ +STA+T+         +  ++       
Sbjct: 181 QNLLFSATFSSAVKKLANDMLVKPKLINLNSQNSTADTVSQVIYPVEQRRKRELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F   +     L   L   G +   +HG   Q +R + L  FKEG ++ 
Sbjct: 239 -IGKKNWQQVLVFTATRDAADKLVKELNLDGITSSVVHGEKAQGTRRRALREFKEGKVRA 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDI D+ +V N+D+P  AE+Y+HRIGRTGRAG+ G A +LV++E+ + + 
Sbjct: 298 LVATEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEERTLY 357

Query: 359 AIEKLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIPQ---KSTGFDRR 409
            IE LI KK+  +       G    L   L K         R +N   Q   +    DRR
Sbjct: 358 DIETLIGKKLPRVTIPGYEVGSRDMLIKQLHKRRSFAKKQQRDDNAGAQVVAERNMQDRR 417

Query: 410 KKNYSSQKSHIPLKESEKIS 429
            K  +S  S+ P  + +KI 
Sbjct: 418 VKVKNS--SNRPATKVKKIR 435


>gi|182413406|ref|YP_001818472.1| DEAD/DEAH box helicase domain-containing protein [Opitutus terrae
           PB90-1]
 gi|177840620|gb|ACB74872.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
          Length = 403

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 174/404 (43%), Positives = 240/404 (59%), Gaps = 16/404 (3%)

Query: 1   MD--FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           MD  F+ LGL   +  AV    YV+PTPIQ + IP+VL+  DV G AQTGTGKTA+F LP
Sbjct: 1   MDTAFSKLGLQDALAYAVQKMDYVEPTPIQAQAIPIVLKGGDVIGSAQTGTGKTAAFALP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           ++  L          R LILEPTRELA QV + F K+ K  +L V ++ GG+ +  Q   
Sbjct: 61  IIQRLSTHGR----LRCLILEPTRELALQVEEAFHKFAKFTDLRVTIVYGGVGYGKQTSD 116

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RG D+L  TPGR+LDH  +G   + ++EILV+DE DRMLDMGF+P ++ I    P  R
Sbjct: 117 LKRGMDILAATPGRLLDHLGQGNCSLEDVEILVLDEVDRMLDMGFLPDVRKIVQRCPKAR 176

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSAT+  EL++++   L NP ++E+    S AET+ H F    A        L QL
Sbjct: 177 QTLFFSATLPPELEQLAGWALHNPTKVEIGRVRSPAETVSHGFYPVVASQK---FDLLQL 233

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +   K+ +IFC  +     + H L+ +G +V  +H +  QR R++ L  FK G  ++
Sbjct: 234 LLERTEFKSVLIFCRTRMGADRIAHRLKTKGHTVGVMHSDRSQRERIEALDGFKSGKFEV 293

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  V HV N+DVP   E+Y+HRIGRTGRA   G AFTLV +ED++   
Sbjct: 294 LVATDIAARGLDIAGVSHVINYDVPENPEDYVHRIGRTGRAHHTGDAFTLVTEEDVRDAR 353

Query: 359 AIEKLIE-----KKVDWLNGDLSSL--NPPLEKIDIAQHNHARK 395
           +IE+ +      KKV+      S+L     L +I  A    A +
Sbjct: 354 SIERYMGMAVERKKVEGFPYIYSALFDEKALAEISAAAPKPAGR 397


>gi|126726299|ref|ZP_01742140.1| DEAD/DEAH box helicase [Rhodobacterales bacterium HTCC2150]
 gi|126704162|gb|EBA03254.1| DEAD/DEAH box helicase [Rhodobacterales bacterium HTCC2150]
          Length = 438

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 151/448 (33%), Positives = 245/448 (54%), Gaps = 16/448 (3%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +GLSP+++  +   G+  PTPIQ + IP +L   D+ G+AQTGTGKTA+F LP+L  L  
Sbjct: 1   MGLSPRILDRLSSKGFTDPTPIQSQAIPHILNGRDIMGLAQTGTGKTAAFGLPILHHLWH 60

Query: 66  GRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
              +         IL PTRELA+Q+ +N   + ++ +L VAL++GG+    Q K+L++G 
Sbjct: 61  VGTKPEDRSARALILAPTRELASQITENLLIFSRDTHLKVALVVGGVSINTQIKRLQKGT 120

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
           DVL+ TPGR+LD  NR  + +++   LV+DEAD+MLDMGFI  ++ I++ +P  RQT++F
Sbjct: 121 DVLVATPGRLLDLLNRRAITLSDARYLVLDEADQMLDMGFIHDLRKISTHLPEERQTMMF 180

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM   + +++E +L +P R++V+ P   A+ +                   + L    
Sbjct: 181 SATMPKLMGELAETYLNSPLRVQVSPPGKAADKVTQEVHFMLQGDK---GQHLKKLLGNH 237

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +  ++F   K     L   L   GF+  +IHGN  Q  R + L  FK G ++++VA+D
Sbjct: 238 REERALVFSRTKHGAEKLKKGLVAVGFAAASIHGNKSQGQRTRALEEFKSGEVKILVATD 297

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARG+DIP V +V+N+D+PN  ENY+HRIGRT RAG  G A    + +++  + AIEK+
Sbjct: 298 VAARGIDIPQVMYVYNYDLPNVPENYVHRIGRTARAGAEGTAIAFCSPDEMGELRAIEKV 357

Query: 364 IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLK 423
           ++  +   +G       P +  DI       K        +G    ++ + ++       
Sbjct: 358 LKSTIKISHG------KPWDG-DIEGRGPGFKPKRGRGGPSGNSSGRRRFGAKPEGAGGG 410

Query: 424 ESEKISKL----QQDIQENDADSLGFRG 447
              +  K     Q+  +++  +S G   
Sbjct: 411 GGNRSGKPGGGGQRRRKKSTRNSAGAGA 438


>gi|322377346|ref|ZP_08051837.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M334]
 gi|321281546|gb|EFX58555.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M334]
          Length = 524

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 151/413 (36%), Positives = 239/413 (57%), Gaps = 9/413 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNELNLSADLLAEIERAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIRT---EEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP +RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPESRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK---IDIAQHNHARKNNPIPQKSTGFDRRK 410
           E L +K++  L    +      +K   +   + + A +      +  G D RK
Sbjct: 355 ENLTKKRMKGLKPASAEEAFQAKKHVALKKIERDFADETIRANFEKFGKDARK 407


>gi|320014325|gb|ADV97896.1| putative ATP-dependent RNA helicase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 451

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 163/449 (36%), Positives = 248/449 (55%), Gaps = 8/449 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY+ PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L + +  +   R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    Q  
Sbjct: 61  QLLSQDQQPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ T GR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATHGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I            ++      
Sbjct: 181 RQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKREL---LS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G I+
Sbjct: 238 QMIGEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE+L+++++  +  D    +P ++   I      R              R +N     
Sbjct: 358 RDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGRGAQRPGMGRGSSAGRPQNGGGAA 417

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFR 446
                + S    + Q D Q   A      
Sbjct: 418 GRGDSRNSR--PRSQADGQRRPAGPSSRG 444


>gi|226943654|ref|YP_002798727.1| DEAD box family ATP-dependent RNA helicase [Azotobacter vinelandii
           DJ]
 gi|226718581|gb|ACO77752.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Azotobacter
           vinelandii DJ]
          Length = 558

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 146/389 (37%), Positives = 232/389 (59%), Gaps = 9/389 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+ P V+ A+   GY +P+PIQ + IP++L  HD+ G AQTGTGKTA+F LPML+ 
Sbjct: 8   FAALGIHPAVLAAITAVGYEEPSPIQAQAIPVILAGHDMIGQAQTGTGKTAAFALPMLSR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++  R     P+ LIL PTRELA QVA  FE Y      + V  + GG P   Q K L +
Sbjct: 68  IDPARRE---PQLLILAPTRELALQVATAFETYASQLPGVGVVAVYGGAPMGPQLKALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGR+ DH  R + L++ ++ LV+DEAD ML +GF+  ++ I + +P +RQT+
Sbjct: 125 GAQILVATPGRLCDHLRRDEQLLSTVKHLVLDEADEMLKLGFMEDLEVIFAALPESRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +++++    ++    +    ++  +T+     A    ++ +       L  
Sbjct: 185 LFSATLPHSIREIA---EKHLHEPQHVKIAAKTQTVARIDQAHLMVHADQKTAAVLRLLE 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 242 VEEFDALIAFVRTKQATLDLAGALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKIDIA 388
           ++  +KV    L G    L+  + K+  A
Sbjct: 362 RVTGQKVAEVHLPGAQQVLDARIRKLTAA 390


>gi|182418672|ref|ZP_02949948.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
 gi|237669697|ref|ZP_04529674.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377449|gb|EDT75004.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
 gi|237654771|gb|EEP52334.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 524

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 147/367 (40%), Positives = 222/367 (60%), Gaps = 6/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL   +V A+ D G+ KP+ IQ ++IP+ L   D+ G AQTGTGKTA++ LP+LT
Sbjct: 5   QFATLGLKESIVRAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSLPILT 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +   +      + LIL PTRELA QV D   +  K     +  + GG   + Q + L +
Sbjct: 65  KMSTNKG----IKALILAPTRELAVQVKDEMNRLSKYEKAEILAVYGGDSIDRQIRALRK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR+LD   R  L ++++E LV+DEAD ML+MGFI  I++I S  P  RQTL
Sbjct: 121 GVDVVVGTPGRMLDLIKRKCLHLDSVEFLVLDEADEMLNMGFIDDIESILSHTPEERQTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D + K+++ +++   ++   +   ++ T+     + +   +K        L  
Sbjct: 181 LFSATMPDPIAKLAKRYMKPDAKLV--SVKKSSLTVSKIEQSYFMINNKHRLEALCRLLD 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D   + IIFC  K+ V  L   L+ +G+ V  +HG++ Q  R+  LS FKEGT+ L++A
Sbjct: 239 LDNPSSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLSKFKEGTLNLLIA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+  V HVFN+D+P   E+Y+HRIGRTGRA R G A++LV  +D   +  I+
Sbjct: 299 TDVAARGIDVDGVTHVFNYDLPQDVESYVHRIGRTGRANREGTAYSLVTPKDFSMLKQIQ 358

Query: 362 KLIEKKV 368
           K+ +  +
Sbjct: 359 KVTKSAI 365


>gi|19705271|ref|NP_602766.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713234|gb|AAL94065.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 528

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 133/368 (36%), Positives = 210/368 (57%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F +LGLS K++  +   GY  PTPIQ  TIP +L+   D+ G AQTGTGKTA+F LP++
Sbjct: 9   EFRELGLSEKILKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E     +   + ++L PTRELA QVA+       +  + V  + GG   + Q K ++
Sbjct: 69  ENFEN----LEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR++D   R  L +N+++  ++DEAD ML+MGF+  I+ I +     ++ 
Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM DE+ KV++N ++  + + V +   T +  E      +    +        + 
Sbjct: 185 LFFSATMPDEIMKVAKNHMKEYEVLAVKSRELTTDLTEQ---IYFEVNERDKFEALCRII 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  GIIFC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I ++V
Sbjct: 242 DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T +  ++ + +  I
Sbjct: 302 ATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 361

Query: 361 EKLIEKKV 368
           +K ++K++
Sbjct: 362 QKAVKKEI 369


>gi|294140728|ref|YP_003556706.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293327197|dbj|BAJ01928.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 448

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 152/412 (36%), Positives = 241/412 (58%), Gaps = 9/412 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ ++ + GY  PTPIQ + IPL L+  ++   AQTG+GKTA+FVLPML
Sbjct: 1   MSFSNLGLSDPILTSLAELGYSSPTPIQAEAIPLALKGKNLIAAAQTGSGKTATFVLPML 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +G   R +  R LIL PTRELA QV  + E YGK  NL    + GG+ +  Q + L
Sbjct: 61  EMLARGENQRKKRIRALILTPTRELAVQVCTSIEAYGKYLNLKALAVYGGVDYGPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR+ D + +  +  + IE+LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IEGIDIVVATPGRLRDLYTQRSIHFDEIEMLVLDEADRMLDMGFIEDITKIIDTLPEDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  + N  ++   + +  +E   +           K + L   L
Sbjct: 181 NLLFSATLSRQVRELAKETIPNAIQL---SVTKKSEGKPNIDQWLVTVDKDKKSALLSHL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +++    +IF   K     L   LEK+G     IH    Q  R +IL++FK G I+ +
Sbjct: 238 IKENSWPQALIFIETKHGAAKLVAQLEKRGIEADCIHSGRAQAIREQILADFKTGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++ ++ARG+DI D+  V N+D+P  A+ Y+HRIGRTGRAG  G+A +LV+K+D K++  
Sbjct: 298 ISTGISARGIDIDDLPLVINYDLPYPADEYVHRIGRTGRAGAAGEAISLVSKDDFKNLCM 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           IE+ ++  ++     +     P +++ ++  N   KN  +P +    D R K
Sbjct: 358 IERRLDLLIER---KVVEGFEPRKEVPVSVLNFVPKN--MPDRDDSKDNRPK 404


>gi|242240743|ref|YP_002988924.1| ATP-dependent RNA helicase DeaD [Dickeya dadantii Ech703]
 gi|242132800|gb|ACS87102.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
          Length = 621

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 136/378 (35%), Positives = 225/378 (59%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   SFADLGLSAPILNALSDMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            +      ++ P+ L+L PTRELA QVA+   ++ K+ +    + +  G  ++ Q + L 
Sbjct: 67  NV---NPELKAPQILVLAPTRELAVQVAEACGEFSKHMHGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + +P   QT
Sbjct: 124 QGPQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPDGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F+ +P+ + + +  +T   I   +   Y     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEA---LIRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  +
Sbjct: 301 ATDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|125586856|gb|EAZ27520.1| hypothetical protein OsJ_11472 [Oryza sativa Japonica Group]
          Length = 394

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 192/377 (50%), Gaps = 15/377 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G+   ++  +   G+ KP+ IQ + +  ++   DV   AQ+GTGKT+   L +  
Sbjct: 32  SFDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQ 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I++     V+    LIL PTRELAAQ        G   N+ V   IGG       +KLE 
Sbjct: 92  IVDTAVREVQA---LILSPTRELAAQTERVMLAIGDYINIQVHACIGGKSIGEDIRKLEH 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++L++DEAD ML  GF   I ++   +P   Q  
Sbjct: 149 GVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQVC 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 209 LISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL--YD 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   +    F+V A+HG++ Q+ R  I+  F+ G  ++++ 
Sbjct: 267 TLTITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLIT 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +          DV  V N+D+PN  E YIHRIGR+GR GR G A   V KEDI+ +  IE
Sbjct: 327 T----------DVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILRDIE 376

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 377 QYYSTQIDEMPMNVADL 393


>gi|325920710|ref|ZP_08182616.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865]
 gi|325548762|gb|EGD19710.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865]
          Length = 643

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 143/371 (38%), Positives = 221/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV + GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 11  FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
            +  + +   P+ L+L PTRELA QVA+ F+KY +       L +  G P+  Q   L+R
Sbjct: 71  ADLNQLK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P  + +   ++T+  I   +      +          ++ 
Sbjct: 188 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEP 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   IIF   K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++VA
Sbjct: 248 FDGM---IIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HV N+D+P   E+Y+HRIGRTGRAGR G A   V   +   + +IE
Sbjct: 305 TDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTPREKGMLRSIE 364

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 365 RATRQPIEEMQ 375


>gi|71065641|ref|YP_264368.1| ATP-dependent DEAD/DEAH box RNA-helicase [Psychrobacter arcticus
           273-4]
 gi|71038626|gb|AAZ18934.1| possible ATP-dependent DEAD/DEAH box RNA-helicase [Psychrobacter
           arcticus 273-4]
          Length = 567

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 139/370 (37%), Positives = 224/370 (60%), Gaps = 6/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL ++  ++ A+  +GY  PTPIQ + IP  LQ  D+   AQTG+GKTA+FV+P+L
Sbjct: 44  VTFTDLNIAKPILSALERSGYTHPTPIQAEAIPFALQGRDLLLSAQTGSGKTAAFVIPVL 103

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL-IGGIPFEAQNKKL 119
             L +  +  ++ + LIL PTRELA QV D+   Y K+      +  +GG P+  Q   L
Sbjct: 104 DRLSRATSFDKLTKALILTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGAPYNGQITAL 163

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G  V++ TPGR+LDH N G++ ++++EILV+DEADRMLDMGF   I +I    P  RQ
Sbjct: 164 KKGVQVIVATPGRLLDHINAGRVDLSSLEILVLDEADRMLDMGFADDISDILRAAPIDRQ 223

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++ SAT    + K++ +F +NP+R+ +   S+  E   +       +       L   +
Sbjct: 224 TIMCSATWDGPVGKIAASFTKNPERVSIKVESAHIEEKVYYCDDFDHKNR-----LLDKI 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                M+  IIF   K++   L   L++ G     +HG++ Q  R +I+ + + G  +++
Sbjct: 279 VCHKDMEQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKCKIL 338

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+P + HV N+D+P + E+Y+HRIGR GRAGR G A +L + +D   ++A
Sbjct: 339 VATDVAARGLDVPALSHVINYDLPRQTEDYVHRIGRCGRAGRTGVAISLCSMDDRPQLNA 398

Query: 360 IEKLIEKKVD 369
           I + +++K++
Sbjct: 399 INRYLDRKME 408


>gi|226313946|ref|YP_002773842.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226096896|dbj|BAH45338.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 493

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 149/444 (33%), Positives = 243/444 (54%), Gaps = 13/444 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA  G  P+++  + D  Y +PT IQ + IPL+++  D+ G AQTGTGKTA+F+LP+L 
Sbjct: 4   SFASFGFRPELMQGIQDLYYKEPTQIQEEAIPLIMEGKDLIGQAQTGTGKTAAFMLPILN 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L++G+  ++    LIL PTREL+ Q+A   EK GK+ N+ V  L GG   + Q  KL+ 
Sbjct: 64  ALDEGKRDIQ---ALILTPTRELSIQIAKEVEKLGKHLNVNVLSLHGGTDIDKQLSKLKE 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  RG L    I  LV+DEAD+M++MGF+  ++ +    P  RQ L
Sbjct: 121 TVQIVVGTPGRVLDHMKRGSLHFGRISTLVLDEADKMMEMGFLEDVEQVIVHTPSQRQVL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++K++  F++ P  I++     T E IE  +            +       
Sbjct: 181 LFSATMPDLVKKLAHRFMKQPPHIKIEGKQKTVERIEQFYYVVNQSDKTDALVDVL---E 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q+     I+F N +  V  L   L++ G S  A++G++ Q  R +++  F+E   Q ++A
Sbjct: 238 QEQPFLTIVFANTQVRVQQLTARLQENGLSAKALYGDLSQNKREQLMKQFREIRFQFLIA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HV N+D+PN  ++YIHR+GRTGRAG+ GKA +L++      +    
Sbjct: 298 TDIAARGLDVEGVTHVINYDLPNDVDSYIHRVGRTGRAGQKGKAISLISPRQKNLMARFA 357

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           K  +  ++        +      +D  +   A +      +      +++     K   P
Sbjct: 358 KATKASIEE------RILQEGRHLDAGRRQRAEEREAHFIELRAQQAKEQQKEKDKEFSP 411

Query: 422 LKES-EKISKLQQDIQENDADSLG 444
           ++E+ +K +K++   ++  A  LG
Sbjct: 412 VREAIKKKTKVKPGYKKKMARELG 435


>gi|168491523|ref|ZP_02715666.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC0288-04]
 gi|168493488|ref|ZP_02717631.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC3059-06]
 gi|182684538|ref|YP_001836285.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           CGSP14]
 gi|221232344|ref|YP_002511497.1| DEAD/DEAH box helicase [Streptococcus pneumoniae ATCC 700669]
 gi|225855026|ref|YP_002736538.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           pneumoniae JJA]
 gi|182629872|gb|ACB90820.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           CGSP14]
 gi|183574224|gb|EDT94752.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC0288-04]
 gi|183576330|gb|EDT96858.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC3059-06]
 gi|220674805|emb|CAR69378.1| DEAD box helicase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225724107|gb|ACO19960.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           pneumoniae JJA]
          Length = 524

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 146/373 (39%), Positives = 224/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIRI---EEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|160880145|ref|YP_001559113.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160428811|gb|ABX42374.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
           ISDg]
          Length = 483

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 133/398 (33%), Positives = 225/398 (56%), Gaps = 14/398 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L  +++ A+    Y++PTPIQ K IPL L+  D+   ++TG+GKTA+F +P+  
Sbjct: 5   KFTQYKLCEEIIQALSMLHYIEPTPIQEKVIPLALEGKDIIAKSKTGSGKTAAFAIPICE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +        +P+ L+LEPTRELA QV D     G+   + V ++ GG PF+ Q   L++
Sbjct: 65  SIVW---EENLPQALVLEPTRELAYQVKDEIFNVGRMKRVKVPVVFGGFPFDKQALTLKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + +++ TPGR+LDH   G L  +N++ ++IDEAD MLDMGF+  ++ I S +P     +
Sbjct: 122 KSHIVVGTPGRVLDHCETGTLKCSNVKYVIIDEADLMLDMGFLDDVKRILSYLPENITIM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + L  +++ F+ +P  +++   +   ET++           +    L   +  
Sbjct: 182 LFSATMGEALYALTDEFMNSPVEVKLEDGT---ETVDSIEQLGCFVTEEDKYELFLRMLY 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++   N +IFC  ++ V  L + L+K+      +HG IDQ+ R+  + +F+ G  + ++A
Sbjct: 239 KNNPTNAMIFCGTREMVEVLYYKLKKEKVWCGMLHGLIDQKQRIHTIDDFRTGGFRYLIA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D  D+ HV N+D+P   E Y+HRIGRTGR G+ GKA + + +E+ K +  IE
Sbjct: 299 TDVAARGVDFDDITHVINYDLPMSKETYVHRIGRTGRNGKSGKAISFIREEEKKMLSLIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           K     ++        + PP E+ ++ +  +  K N  
Sbjct: 359 KFTGTPIEI-------VTPPSEE-EVREFLYKEKFNEA 388


>gi|238749853|ref|ZP_04611357.1| ATP-dependent RNA helicase rhlE [Yersinia rohdei ATCC 43380]
 gi|238711782|gb|EEQ03996.1| ATP-dependent RNA helicase rhlE [Yersinia rohdei ATCC 43380]
          Length = 450

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 163/438 (37%), Positives = 247/438 (56%), Gaps = 16/438 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY  PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVEEQGYEVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L + +  +   R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    Q  
Sbjct: 61  QLLSQNQQPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAR 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I            ++      
Sbjct: 181 RQNLLFSATFSDEIKGLASKLLNNPASVEVARRNTASEQIAQSVHFVDKNRKREL---LS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G I+
Sbjct: 238 QMIGEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR----------KNNPIPQKSTGFD 407
             IE+L+++++  +  D    +P ++   I      R           +   PQ   G  
Sbjct: 358 RDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGRGAQRPGMGRGSSAGRPQNGGGAG 417

Query: 408 RRKKNYSSQKSHIPLKES 425
           R     S  +S    +  
Sbjct: 418 RGDSRTSRPRSQADGQRR 435


>gi|317402151|gb|EFV82742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
          Length = 481

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 156/380 (41%), Positives = 227/380 (59%), Gaps = 8/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D GL P ++ ++ + GY  PTPIQ + IP+V++  DV G AQTGTGKTA+F LP+L  
Sbjct: 20  FSDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHR 79

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L         P        IL PTRELA QV ++ ++Y K   L  A++ GG+    Q +
Sbjct: 80  LMPLANTSASPARHPVRALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQKE 139

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG +VL+ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF+P ++ I  L+P  
Sbjct: 140 ALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQ 199

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT ++E++K+  ++L +P  IEV   ++TA TI            +   +   
Sbjct: 200 RQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATANTITQIAYKMSGDQKRAAVVHL- 258

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                  +K  I+F N K     L   LE+ G    +IHG+  Q  RMK L  FK G ++
Sbjct: 259 --VKSRGLKQVIVFSNTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKAGELE 316

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  V  V N+D+P  AE+Y+HRIGRTGRAG  G+A  L   ++ + +
Sbjct: 317 VLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGATGEAIALFTADEERFL 376

Query: 358 DAIEKLIEKKVDWLNGDLSS 377
             IEKLI+++V     D+ +
Sbjct: 377 LDIEKLIKREVPRGTLDVPA 396


>gi|304413657|ref|ZP_07395101.1| ATP-dependent RNA helicase [Candidatus Regiella insecticola LSR1]
 gi|304283748|gb|EFL92142.1| ATP-dependent RNA helicase [Candidatus Regiella insecticola LSR1]
          Length = 449

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 141/442 (31%), Positives = 233/442 (52%), Gaps = 10/442 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           + F++  L+ +++ A+ D GY +PT IQ   IP  ++  D+ G A TGTGKTA+F+LP+ 
Sbjct: 4   IHFSEFDLNDRLIKALNDKGYQRPTAIQAMAIPAAMEGRDLLGSAPTGTGKTAAFLLPIL 63

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QVA+   +   N +L +  + GG+ +    +  
Sbjct: 64  QHLLDFPRRKSGPPRILILTPTRELAMQVAEQANELAVNTSLAITTITGGVAYMNHAEIF 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ T GR+L +        + +E L++DEADRMLDMGF   I+ I +     +Q
Sbjct: 124 TENQDIVVATTGRLLQYIQEENFDCHAVETLILDEADRMLDMGFAKDIEAIAAKTCCRKQ 183

Query: 180 TLLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           TLLFSAT   + +++ ++  L++P  ++ +      + I   +        KK  L    
Sbjct: 184 TLLFSATLEGEAIREFAKRILKDPLELDADPSRRERKKIIQWYYRADDIEHKKALLC--H 241

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +Q  +K  IIF    + V  L   L +       + G + Q  R + +    +G I +
Sbjct: 242 LLTQPEVKKSIIFVRTCERVHELVGWLREADIHAWYLEGKMIQAKRTEAVIRLNDGRINV 301

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +L+   D   + 
Sbjct: 302 LVATDVASRGLDIDDISHVFNFDMPRTADVYLHRIGRTGRAGRKGTAISLIENHDYLLLQ 361

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ-- 416
            + + ++    +   D S     +E++       ++K    P K+    R+ K  + +  
Sbjct: 362 KVGRYLKAGRYF---DESLKPRVIEELRPKSKAPSKKFTGKPSKAVSAKRKAKKEAGKEK 418

Query: 417 -KSHIPLKESEKISKLQQDIQE 437
            K  I  ++S+ I K +Q  ++
Sbjct: 419 PKQKIRHRDSKNIGKRRQPTKK 440


>gi|149179168|ref|ZP_01857736.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
 gi|148841986|gb|EDL56381.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
          Length = 445

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 155/407 (38%), Positives = 241/407 (59%), Gaps = 8/407 (1%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F +L L   V  A+++  Y  PTPIQ +TIP  L+  DV G AQTGTGKTA+  LP+
Sbjct: 1   MNTFQELKLIAPVQKALVEENYKIPTPIQAQTIPAALEGRDVLGCAQTGTGKTAALALPI 60

Query: 60  LTILEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L  L K   +     P  L+L PTRELA Q+ D+F+ YG++  L   L+ GG+    Q K
Sbjct: 61  LNQLGKNSRKSIPHHPLALVLAPTRELAIQIGDSFDAYGRHLKLRSVLIYGGVGQGNQVK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+RGA +L+ TPGR+LD  N+G + +N +E+ V+DEADRMLDMGF+P ++ I + +P  
Sbjct: 121 ALKRGAHILVATPGRLLDLMNQGHIKLNQLEVFVLDEADRMLDMGFLPDLKRIITQLPTQ 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+L FSAT+  ++ +++ + L  P  + V   +++ E I+   +     + +      Q
Sbjct: 181 RQSLFFSATLAPKITELAHSLLSKPVTVNVTPKTTSVEKIQQQLMFVERNFKQPL---LQ 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   D ++  ++F   K+    L   L + GF   AIHGN  Q +R + L  F+   +Q
Sbjct: 238 KILGGDEVERALVFTKTKRTANTLSQRLVRSGFKATAIHGNKSQGARQQALEAFRRKQVQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  + HV NFD+P   E Y+HRIGRTGRAG +G A +  ++ + K +
Sbjct: 298 VLVATDVAARGIDIDGITHVINFDLPVEPEAYVHRIGRTGRAGANGIAISFCSESERKEL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
            +IE+LI +KV  ++ + S      EK++  +    R+   I Q++ 
Sbjct: 358 RSIERLIGQKVP-VSKEHSQAGLKAEKLE-PEPRRGRQPAKIRQQAA 402


>gi|148272405|ref|YP_001221966.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830335|emb|CAN01269.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 586

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 140/373 (37%), Positives = 216/373 (57%), Gaps = 7/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLGLS +V+ A+ D GY  P+ IQ  TIP +L   DV G+AQTGTGKTA+F LP+L+
Sbjct: 19  TFSDLGLSDQVLKALKDVGYETPSAIQAATIPSLLSGRDVLGVAQTGTGKTAAFALPILS 78

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+  +   + P+ L+L PTRELA QV + FE+Y         L +  G  +  Q   L 
Sbjct: 79  NLDVSQ---KTPQALVLAPTRELALQVCEAFERYASGMRGVHVLPVYGGQGYGVQLSALR 135

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGRI+DH ++G L ++ ++ LV+DEAD ML MGF   ++ I +  P ++Q 
Sbjct: 136 RGVHVVVGTPGRIMDHLDKGTLDLSQLKFLVLDEADEMLKMGFAEDVETILADTPKSKQI 195

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  +++++S  +LQ+P+ I V   ++T+      ++                 +
Sbjct: 196 ALFSATMPAQIRRISGKYLQDPEEITVKNKTTTSANTTQRYLMVSYPQKVDALTRILETE 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + M   I+F   K     L   L  +G++  AI G++ Q  R + +   K G + ++V
Sbjct: 256 NFEGM---IVFVRTKNETETLAEKLRARGYAAAAISGDVAQAQRERTVEQLKNGKLDILV 312

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A + V   + + + AI
Sbjct: 313 ATDVAARGLDVDRISHVVNYDIPIDTESYVHRIGRTGRAGRSGAAISFVTPRERRLLTAI 372

Query: 361 EKLIEKKVDWLNG 373
           EK   + +  +  
Sbjct: 373 EKATRQPLTEMRM 385


>gi|325918892|ref|ZP_08180966.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC
           35937]
 gi|325534878|gb|EGD06800.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC
           35937]
          Length = 636

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 143/371 (38%), Positives = 222/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV + GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 11  FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
            +  + +   P+ L+L PTRELA QVA+ F+KY +       L +  G P+  Q   L+R
Sbjct: 71  ADLNQLK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P  + +   ++T+  I   +      +          ++ 
Sbjct: 188 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEP 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   IIF   K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++VA
Sbjct: 248 FDGM---IIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HV N+D+P   E+Y+HRIGRTGRAGR+G A   V   +   + +IE
Sbjct: 305 TDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIE 364

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 365 RATRQPIEEMQ 375


>gi|225861416|ref|YP_002742925.1| cold-shock DEAD box protein A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298230290|ref|ZP_06963971.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255231|ref|ZP_06978817.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298503322|ref|YP_003725262.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225727400|gb|ACO23251.1| cold-shock DEAD box protein A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238917|gb|ADI70048.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327389770|gb|EGE88115.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA04375]
          Length = 524

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 146/373 (39%), Positives = 224/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIRT---EEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|149022054|ref|ZP_01836016.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP23-BS72]
 gi|147929898|gb|EDK80887.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP23-BS72]
          Length = 511

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 146/373 (39%), Positives = 224/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIRT---EEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|15901428|ref|NP_346032.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           TIGR4]
 gi|15903483|ref|NP_359033.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae R6]
 gi|111657434|ref|ZP_01408185.1| hypothetical protein SpneT_02001363 [Streptococcus pneumoniae
           TIGR4]
 gi|116516011|ref|YP_816872.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae D39]
 gi|148988638|ref|ZP_01820071.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP6-BS73]
 gi|148993389|ref|ZP_01822906.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|148997346|ref|ZP_01824951.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP11-BS70]
 gi|149003176|ref|ZP_01828072.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS69]
 gi|149007498|ref|ZP_01831133.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP18-BS74]
 gi|168486852|ref|ZP_02711360.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1087-00]
 gi|168488692|ref|ZP_02712891.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae SP195]
 gi|168575216|ref|ZP_02721179.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae MLV-016]
 gi|237650716|ref|ZP_04524968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI
           1974]
 gi|237821935|ref|ZP_04597780.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI
           1974M2]
 gi|303256042|ref|ZP_07342065.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS455]
 gi|303260214|ref|ZP_07346186.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP-BS293]
 gi|303262605|ref|ZP_07348546.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265007|ref|ZP_07350922.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS397]
 gi|303266470|ref|ZP_07352358.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS457]
 gi|303269052|ref|ZP_07354834.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS458]
 gi|307068227|ref|YP_003877193.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           AP200]
 gi|61223743|sp|P0A4D7|EXP9_STRPN RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName:
           Full=Exported protein 9
 gi|61223744|sp|P0A4D8|EXP9_STRR6 RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName:
           Full=Exported protein 9
 gi|14973078|gb|AAK75672.1| putative ATP-dependent RNA helicase [Streptococcus pneumoniae
           TIGR4]
 gi|15459096|gb|AAL00244.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116076587|gb|ABJ54307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae D39]
 gi|147756401|gb|EDK63442.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP11-BS70]
 gi|147758636|gb|EDK65633.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS69]
 gi|147760857|gb|EDK67827.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP18-BS74]
 gi|147925839|gb|EDK76914.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP6-BS73]
 gi|147927944|gb|EDK78964.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|183570214|gb|EDT90742.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1087-00]
 gi|183572869|gb|EDT93397.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae SP195]
 gi|183578956|gb|EDT99484.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae MLV-016]
 gi|301794592|emb|CBW37036.1| DEAD box helicase family protein [Streptococcus pneumoniae INV104]
 gi|301802300|emb|CBW35052.1| DEAD box helicase family protein [Streptococcus pneumoniae INV200]
 gi|302597002|gb|EFL64125.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS455]
 gi|302636322|gb|EFL66816.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638711|gb|EFL69174.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP-BS293]
 gi|302641442|gb|EFL71807.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS458]
 gi|302644048|gb|EFL74307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS457]
 gi|302645526|gb|EFL75758.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS397]
 gi|306409764|gb|ADM85191.1| Superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           AP200]
 gi|332072430|gb|EGI82913.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA17570]
 gi|332199626|gb|EGJ13701.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA41317]
 gi|332200146|gb|EGJ14219.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA47368]
 gi|332201024|gb|EGJ15095.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA47901]
          Length = 524

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 146/373 (39%), Positives = 224/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIRT---EEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|146313234|ref|YP_001178308.1| ATP-dependent RNA helicase DeaD [Enterobacter sp. 638]
 gi|145320110|gb|ABP62257.1| ATP-dependent RNA helicase CsdA [Enterobacter sp. 638]
          Length = 655

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 133/378 (35%), Positives = 226/378 (59%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     +R P+ L+L PTRELA QVA+   ++ K+      + +  G  ++ Q + L 
Sbjct: 67  NIDP---ELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ ++ LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F+++P+ + + +  +T   I   F + +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQTFWSVHGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQSLREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E++++  +   +   + L
Sbjct: 361 ERIMKLTIPEADLPNAEL 378


>gi|24662330|ref|NP_648413.1| CG6418 [Drosophila melanogaster]
 gi|7294797|gb|AAF50131.1| CG6418 [Drosophila melanogaster]
 gi|16769458|gb|AAL28948.1| LD32732p [Drosophila melanogaster]
 gi|220946788|gb|ACL85937.1| CG6418-PB [synthetic construct]
          Length = 791

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 139/412 (33%), Positives = 219/412 (53%), Gaps = 4/412 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   G   +++ AV  A Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ PML 
Sbjct: 270 SFGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLM 329

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   +       P  LIL PTREL+ Q+ +  +K+GK YNL V    GG     Q+K L
Sbjct: 330 HVMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKAL 389

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+GA++++ TPGR++D        +  +  LV+DEADRM  MGF P +++I + V   RQ
Sbjct: 390 EQGAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQ 449

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT    +++++ + L +P RI     +   + I            K   LL  L+
Sbjct: 450 CLMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLV 509

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +      + +IF  +K +   + ++L  + ++   +HG++DQ  R K+++ FK     ++
Sbjct: 510 KFLSEG-SVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDIL 568

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + +V N+D     E + HRIGRTGRAG  G A+TLV  +D +    
Sbjct: 569 VATDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVTDKDKEFAGH 628

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           + + +E     +  DL  L         ++    +   P     TG   R+K
Sbjct: 629 LVRNLEGADQLVPDDLMELAMKSSWFRSSRFKQGKGKRPTNTH-TGLGYREK 679


>gi|24372961|ref|NP_717003.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24347107|gb|AAN54448.1|AE015582_2 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 433

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 155/434 (35%), Positives = 235/434 (54%), Gaps = 11/434 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F      P+++ A+ D GY K TPIQ + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             + +  +       R LIL PTRELAAQVA+N E Y K  N +V  + GG+  E Q +K
Sbjct: 61  QKMVENPSETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RGAD+++ TPGR+L+H     L +++++ LV+DEADRMLDMGF   IQ I   V   R
Sbjct: 121 LKRGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  ++K++   +  P+ I  +  ++TA+T+         +  ++       
Sbjct: 181 QNLLFSATFSSAVKKLANEMMIKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F   +     L   L   G     +HG   Q SR + L  F  G +++
Sbjct: 239 -IGKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDIP + +V NFD+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLA 357

Query: 359 AIEKLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            IEKLI +K+  +       G    L   L+          R++N   Q       + + 
Sbjct: 358 DIEKLIGQKIRRITVPGYEVGSRDLLLKQLQTRRSFAKKQQRQDNVSEQMIAEKSMQGRR 417

Query: 413 YSSQKSHIPLKESE 426
              +    P K  +
Sbjct: 418 VKMKVGQAPSKAKK 431


>gi|325091997|gb|EGC45307.1| ATP-dependent RNA helicase DBP2 [Ajellomyces capsulatus H88]
          Length = 544

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 128/381 (33%), Positives = 211/381 (55%), Gaps = 4/381 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ +PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 127 TFDEAGFPQYVMSEVKAQGFARPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 186

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 187 HINAQPLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQIRDL 246

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 247 TRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 306

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ-- 237
           T ++SAT   ++++++++FL +  ++ + +   +A       V   +++ K+  + +   
Sbjct: 307 TCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAKHLD 366

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     +IF   K+   ++   L + G+   +IHG+  Q  R  +L+ FK G   
Sbjct: 367 RIMEDNKHSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSP 426

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A TL   ++ K  
Sbjct: 427 IMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQA 486

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             +  ++ +    ++  L+ +
Sbjct: 487 RDLVAILSESKQQIDPRLAEM 507


>gi|323491504|ref|ZP_08096686.1| ATP-dependent RNA helicase SrmB [Vibrio brasiliensis LMG 20546]
 gi|323314258|gb|EGA67340.1| ATP-dependent RNA helicase SrmB [Vibrio brasiliensis LMG 20546]
          Length = 411

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 130/371 (35%), Positives = 202/371 (54%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA+L L P ++ A+ + GY +PT IQ + IP  L   DV   A TGTGKTA+F LP L 
Sbjct: 4   NFAELELDPNLLLAIEEMGYDRPTQIQAEAIPQALDGRDVLASAPTGTGKTAAFALPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    R   P  + IL PTRELA QVAD      K+ NL +  + GG+ ++     L 
Sbjct: 64  FLQDFPRRKPGPARVLILTPTRELAMQVADQARALAKHTNLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR++++    +     IE L++DEADRMLDMGF P +  ++S   + +QT
Sbjct: 124 TTQDIVVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSSECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     ++  + + L++P  I+        + I   +        K         
Sbjct: 184 LLFSATLEGKGVEGFTADLLKDPAEIDAEPSRRERKKIAQWYHRADDMTHKLE---LLKK 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F   ++ +  L   LEK       I G + Q  R   ++ F++GT+ ++
Sbjct: 241 ILTEQAERSIVFLKTRERLAELRTELEKAQIPCAWIQGEMPQDRRNNAIARFRDGTVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A +LV   D   ID 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRSADVYLHRIGRTARAGKKGNAVSLVEAHDQPMIDR 360

Query: 360 IEKLIEKKVDW 370
           + + +++ +  
Sbjct: 361 VARYVKEDIKE 371


>gi|225555683|gb|EEH03974.1| ATP-dependent RNA helicase DBP2 [Ajellomyces capsulatus G186AR]
          Length = 544

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 128/381 (33%), Positives = 211/381 (55%), Gaps = 4/381 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ +PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 127 TFDEAGFPQYVMSEVKAQGFARPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 186

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 187 HINAQPLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQIRDL 246

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 247 TRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 306

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ-- 237
           T ++SAT   ++++++++FL +  ++ + +   +A       V   +++ K+  + +   
Sbjct: 307 TCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAKHLD 366

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     +IF   K+   ++   L + G+   +IHG+  Q  R  +L+ FK G   
Sbjct: 367 RIMEDNKHSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSP 426

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A TL   ++ K  
Sbjct: 427 IMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQA 486

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             +  ++ +    ++  L+ +
Sbjct: 487 RDLVAILSESKQQIDPRLAEM 507


>gi|255955551|ref|XP_002568528.1| Pc21g15180 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590239|emb|CAP96415.1| Pc21g15180 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 416

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 121/373 (32%), Positives = 199/373 (53%), Gaps = 5/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  V   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F +  L 
Sbjct: 26  TFEDMHLKESLLRGVYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFAISTLQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 86  IIDTV---VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDY 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 143 GQHVVSGTPGRVADMIRRRNLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P R+ V     T E I+  F+A   +  K   L       
Sbjct: 203 VVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDL--YD 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++++
Sbjct: 261 TLTITQAVIFCNTRRKVDWLADKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIS 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  IE
Sbjct: 321 TDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIE 380

Query: 362 KLIEKKVDWLNGD 374
                ++D +  +
Sbjct: 381 LYYSTQIDEMPMN 393


>gi|323693539|ref|ZP_08107743.1| hypothetical protein HMPREF9475_02606 [Clostridium symbiosum
           WAL-14673]
 gi|323502394|gb|EGB18252.1| hypothetical protein HMPREF9475_02606 [Clostridium symbiosum
           WAL-14673]
          Length = 422

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 142/421 (33%), Positives = 219/421 (52%), Gaps = 13/421 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GLS  ++ ++   GY +PT IQ + IP +L+  +V G A TG+GKTA+F +P+  
Sbjct: 8   SFGAYGLSDDILESLRLLGYERPTEIQQQVIPAMLEGKNVVGRAPTGSGKTAAFAIPICD 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +        +P+ LILEPTREL  QV +     G+   L V  + GG P + Q + L++
Sbjct: 68  KIIW---EENLPQALILEPTRELTVQVQEEVFHIGRKKRLKVPAVFGGFPIDKQIRSLKQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + ++  TPGR++DH  RG L+++ +  LVIDEAD MLDMGFI  ++ I  L+    +  
Sbjct: 125 KSHIVTGTPGRVMDHIRRGSLILDKVTCLVIDEADLMLDMGFIDEVKQILDLLSPECRIA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  E+++ + + + +   I    P +    I      T  +   K  L     ++
Sbjct: 185 LFSATLKPEIREFAGSHIHDMVMIFTEQPEAAENAITEELFETDNENKFKVFLNVLYREN 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFC  ++ V  L   L +       IHG ++Q+ R+K +  F+ G I+ ++A
Sbjct: 245 PQCC---IIFCGTREMVNVLFQKLRRHRIFCGMIHGELEQKERLKTIDAFRRGAIRYLIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ ++ HV N+D P   E Y+HRIGRTGR GR GKA +LV  ED + +   E
Sbjct: 302 TDVAARGIDLENITHVINYDFPTGRETYVHRIGRTGRNGRTGKAVSLVTAEDRRMLQMTE 361

Query: 362 KLIEKKVDWLNGDLSS-------LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +   + +  L    SS             K +      A  N  I + S G  R+ KN S
Sbjct: 362 EYTGRSLPVLVCPESSGEEEKNFWKSQRLKTEAKPSKRAALNQDIIRLSIGGGRKSKNAS 421

Query: 415 S 415
            
Sbjct: 422 R 422


>gi|226325568|ref|ZP_03801086.1| hypothetical protein COPCOM_03373 [Coprococcus comes ATCC 27758]
 gi|225206051|gb|EEG88405.1| hypothetical protein COPCOM_03373 [Coprococcus comes ATCC 27758]
          Length = 531

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 141/410 (34%), Positives = 232/410 (56%), Gaps = 17/410 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++GLS ++  AV   G+ + +PIQ K IP ++   D+ G AQTGTGKTA+F +P+L  
Sbjct: 6   FEEMGLSEEIQKAVRYMGFEEASPIQAKAIPAMISGIDLIGQAQTGTGKTAAFGIPLLEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    +++     +L PTRELA QVAD      +  +    L I  G     Q + L+ 
Sbjct: 66  VDPKLKKLQAI---VLCPTRELAIQVADEIRNLSRYMHGIKVLPIYGGQDIVKQIRSLKS 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR++DH  R  + ++ +  +V+DEAD ML+MGF   I+ + S VP  RQT+
Sbjct: 123 GTQIVIGTPGRVMDHMRRKTMKLDFVHTVVLDEADEMLNMGFREDIEFVLSGVPEERQTV 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   + ++++ F  N K I+V     T   IE  +        KK   +   L  
Sbjct: 183 LFSATMPKPIMEITKKFQNNAKVIKVTKKELTVPNIEQYYYDVKP---KKKEEVLSRLLD 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  ++FCN KK V  L ++L  +G+    +HG++ Q  R +++  F+ G  +++VA
Sbjct: 240 IYSPRLSVVFCNTKKQVDLLVNALLGRGYFAAGLHGDMKQEQRDRVMQGFRTGKTEILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ +V  VFN+D+P   E Y+HRIGRTGRAGR G+AF+ V+ +++  +  I+
Sbjct: 300 TDVAARGIDVDEVEAVFNYDLPQDDEYYVHRIGRTGRAGREGRAFSFVSGKEVYKLKEIQ 359

Query: 362 KLIEKKV---------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           +  + K+         D  N  + ++   +E++ I Q +     N I ++
Sbjct: 360 RYCKTKIYAQKVPSLNDVANTKMENILDDVERV-IEQEDLDMMINAIEER 408


>gi|147921542|ref|YP_684642.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
 gi|110620038|emb|CAJ35316.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
          Length = 497

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 141/368 (38%), Positives = 215/368 (58%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L L+P +V AV + G+ + TPIQ + IPL ++  D+ G A+TGTGKTA+F +PM+
Sbjct: 2   VKFTELNLTPSIVRAVHEMGFEEATPIQEQAIPLAMEGKDLIGQARTGTGKTAAFGIPMV 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      V+    L++ PTRELA QVA+   + GK   +    + GG  F +Q K LE
Sbjct: 62  EAIRPTSKGVQ---GLVVVPTRELAVQVAEELTRIGKVRGIRSVAIYGGQDFRSQVKALE 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+L+H  R  +  ++I I V+DEAD+MLDMGFI   + I   +P  RQT
Sbjct: 119 ELPHIVVGTPGRLLEHMRREYVRTSDIRIAVLDEADKMLDMGFIDEAEKILKKLPERRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT++  +Q ++  +L++P+ IE      T  T             K+       L 
Sbjct: 179 LLFSATLSPPVQMLARKYLKDPELIEFEEEGITVPTT---VQYYIEMPEKQKFEALTRLL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+  +  I+F   +  V  L  +L ++G+    +HG++ Q  R   L  FK G + ++V
Sbjct: 236 DQEKPELAIVFVATRIRVGELAKALVERGYHALGLHGDLLQYQRENTLDKFKAGEVSILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   ++Y+HRIGRTGRAG  G A T V  +D   ++AI
Sbjct: 296 ATDVAARGLDIQGVTHVYNFDIPRDPDSYVHRIGRTGRAGNAGTATTFVTPKDKTALEAI 355

Query: 361 EKLIEKKV 368
           E+ I+ ++
Sbjct: 356 EQAIDHQI 363


>gi|317127486|ref|YP_004093768.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315472434|gb|ADU29037.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 500

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 155/409 (37%), Positives = 230/409 (56%), Gaps = 10/409 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL + P +V A+   G+ + TPIQ K IPL  +  D+ G AQTGTGKT +F +P    
Sbjct: 4   FKDLNIQPSIVEAIEKMGFEETTPIQEKVIPLGKEGQDIIGQAQTGTGKTVAFGIP---C 60

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E+     + P+ L+L PTRELA QVA+   K G+   +    + GG     Q   L++ 
Sbjct: 61  VEQVVVEEKHPQALVLTPTRELAIQVAEELNKLGQVKGIKALPIYGGQEITRQITALKKR 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR +DH  R  +    ++I+V+DEAD ML MGFI  I+ I   VP  RQTLL
Sbjct: 121 PQIIVATPGRYMDHMRRKTIRPEFLKIVVLDEADEMLSMGFIEDIETILQEVPGERQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  +L+ +++ F+  P  I V     T E IE       A   K+       L   
Sbjct: 181 FSATMPPKLKTIADRFMNKPVSIAVKAKQLTVENIEQ---RYIALSEKEKFDTLCNLLDM 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T +  IIF   K+ V  L  SL  +GF+V  +HG++ Q  R +++  FK G+I +MVA+
Sbjct: 238 ETPELAIIFGRTKRRVDELTESLSIRGFAVEGLHGDMKQERRDQVIRKFKRGSIDVMVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+ DV HV NFD+P  +E+Y+HRIGRTGRAG+ G +++ V  ++  H+  IE+
Sbjct: 298 DVAARGLDVNDVSHVINFDLPQDSESYVHRIGRTGRAGKKGISYSFVTHKEKDHLRYIEE 357

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK--NNPIPQKSTGFDRR 409
              +K+  +  D  +L   +        N  +K  NN   ++ TG  ++
Sbjct: 358 STRQKMKQV--DAPTLADAMRGRHKQAVNELKKAVNNAASKQLTGEAKQ 404


>gi|317046374|ref|YP_004114022.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp.
           At-9b]
 gi|316947991|gb|ADU67466.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
          Length = 431

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 141/422 (33%), Positives = 215/422 (50%), Gaps = 12/422 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L         +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  HLLTHPAAEGRQVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE+G D+L+ T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLEQGVDILVGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWVFRRIPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F        V       +T        +   +++   L Q
Sbjct: 190 TQRLSMLFSATLSYRVRELAFEHMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     I+F N K    ++   L   G  V  + G++ Q+ R++IL +F +G + 
Sbjct: 249 TLLEEEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR---RK 410
            AIE+ I   +     +    LS L PP         N  R+      + +G  R   RK
Sbjct: 369 PAIEEYIGHGIPVSKYNSEALLSDLPPPKRLTRNRSGNGPRRGGNNANRRSGAPRNNNRK 428

Query: 411 KN 412
           ++
Sbjct: 429 RS 430


>gi|238028570|ref|YP_002912801.1| ATP-dependent RNA helicase [Burkholderia glumae BGR1]
 gi|237877764|gb|ACR30097.1| ATP-dependent RNA helicase [Burkholderia glumae BGR1]
          Length = 483

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 162/391 (41%), Positives = 231/391 (59%), Gaps = 9/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGL+  +V AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFASLGLAEPLVRAVNELGYNEPTPIQTQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                         R  R LIL PTRELAAQV ++   YGK   L   ++ GG+    Q 
Sbjct: 61  QRLNAFQPANANGKRAVRALILTPTRELAAQVEESVRAYGKYLKLRSTVMFGGVSINPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+RG D+++ TPGR+LDH  +  + ++ ++ILV+DEADRMLDMGFI  I+ + + +P 
Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSQLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT +DE++ ++++ L +P  IEV   ++TAETI            +    + 
Sbjct: 181 KRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKR---EML 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L  +      ++F   K     L   L K G S  AIHGN  Q +R + LS FK GT+
Sbjct: 238 THLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALSEFKAGTL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  + HV N+++PN  E+Y+HRIGRTGRAG +G+A +LV  ++   
Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKPL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKI 385
           +  IE+LI++++    + G     N   E I
Sbjct: 358 LRDIERLIKREIPQQVIAGFEPDPNAKPEPI 388


>gi|229526712|ref|ZP_04416116.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
 gi|229336870|gb|EEO01888.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
          Length = 422

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 152/433 (35%), Positives = 236/433 (54%), Gaps = 22/433 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGL  +++ A+ + G V PTPIQ + IP VLQ  DV   AQTGTGKTA+F LP++
Sbjct: 6   ITFSQLGLDSRLLNALSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65

Query: 61  TILEKGRARVRMPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               +   +       I      PTRELA QV D+ + Y K   L +  + GG   + Q 
Sbjct: 66  QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G D+LI TPGR+LDH +   L +  +E+LV+DEADRMLDMGF+P +Q +   +  
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSAT   +++ V+   +++P  ++V   +STAET+       Y    K+   L 
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETV---QQMVYPVDKKRKRELL 242

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L      +  ++F   ++    L   L+  G    +I+G+  Q +R K L +FK G +
Sbjct: 243 SYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L++ ++   
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSYDEQPQ 362

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           ++AIE+L+  ++  +WL G   S               A + N  P+ +     ++K  +
Sbjct: 363 LEAIERLLNTRLPQEWLKGFEPS-------------PVAHEENSPPRSAGRSSEKRKLKA 409

Query: 415 SQKSHIPLKESEK 427
             K H    +  +
Sbjct: 410 QLKIHAQRGKKAR 422


>gi|262193653|ref|YP_003264862.1| DEAD/DEAH box helicase [Haliangium ochraceum DSM 14365]
 gi|262077000|gb|ACY12969.1| DEAD/DEAH box helicase domain protein [Haliangium ochraceum DSM
           14365]
          Length = 497

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 163/404 (40%), Positives = 228/404 (56%), Gaps = 11/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AV DAGY   TPIQ + IP  L   D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MPFQQLGLSEPLVRAVHDAGYTNATPIQTQAIPPALDGRDLLGCAQTGTGKTAAFSLPIL 60

Query: 61  TILEKGRARVRMPRTL-------ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L +       PR         I+ PTRELAAQ+ D+   YG++  L   ++ GG+   
Sbjct: 61  QRLAETGDGNARPRRGARPIRALIVTPTRELAAQIGDSMTTYGRHLPLRNTVIFGGVNQN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L RG D+L+ TPGR+LD  ++G + ++ +E+ V+DEADRMLDMGFI  I+ I + 
Sbjct: 121 RQVDALRRGIDILVATPGRLLDLMDQGYIHLDRLEVFVLDEADRMLDMGFIHDIRKIVAA 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           VP  RQTLLFSATM  E+Q ++   LQ P ++ V   S+ AET+E C      +  +   
Sbjct: 181 VPSERQTLLFSATMPGEIQSLAAGLLQEPVKVSVTPESTAAETVEQCVYLVSREDKQSLL 240

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                   +      ++F   K     +   L K      AIHGN  Q +R++ L +FK 
Sbjct: 241 TELLRDDPEM--AKVLVFSRTKHGADRVAKRLSKSNIPAQAIHGNKSQNARLRALESFKR 298

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G  +++VASD+AARGLDI  + HV NFD+PN  E Y+HRIGRTGRAG  G A +  A E+
Sbjct: 299 GDTRVLVASDIAARGLDIDALSHVVNFDLPNEPETYVHRIGRTGRAGCEGVAMSFCADEE 358

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
             ++ +IE+LI++ +  +           +K+ + Q    R N+
Sbjct: 359 RGYLRSIERLIDQLIPVIED--HPFPAGFDKLPVEQPRPQRANH 400


>gi|114329100|ref|YP_746256.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
 gi|114317274|gb|ABI63334.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
          Length = 402

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 148/406 (36%), Positives = 228/406 (56%), Gaps = 9/406 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           + F   GL+  ++ A+  A + KPTPIQ   IP +L+  D+ GIAQTGTGKTA+F LP+ 
Sbjct: 4   VTFDSFGLAEPILQALQAASFHKPTPIQAGAIPPLLEGRDLLGIAQTGTGKTAAFSLPLL 63

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
              + ++ R R    R LIL PTRELA Q+ DN    G    +   L++GG+  + Q ++
Sbjct: 64  QHLMQKRERPRAFSTRALILAPTRELAVQIDDNLRMLGGELPIRRVLILGGVGRKPQVQR 123

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++RGAD++I TPGRI D  +  +LL++ +   V+DEADRMLD+GF+  I+ + + +P  R
Sbjct: 124 MQRGADIVIGTPGRICDLMSTNELLLDQVSHFVLDEADRMLDLGFMRDIRKVLASLPEKR 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+LLFSATM  E+ +++E  L+NP R+ +     T + I        +   +        
Sbjct: 184 QSLLFSATMPGEIGRLAEGLLRNPARVRIAVEEPTPDRIAQHVHFIESTGKRVLLTRLL- 242

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +   ++  I+F   K     +   LE+ G    AIHGN  Q +R + L  F+ G  ++
Sbjct: 243 --ADRALEKVIVFTRTKHGANRVAEHLEESGIPADAIHGNKSQNARQRALERFRSGEARV 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  V HV NF++PN  E+Y+HRIGRT RAG+ G A +     +   + 
Sbjct: 301 LVATDIAARGIDVAGVSHVVNFELPNEPESYVHRIGRTARAGQRGIAISFCDGSERPFLK 360

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           AIEKL   K+    G  S L       +  +   AR++ P  + + 
Sbjct: 361 AIEKLTRVKMSVAGGVESDLPAE----EPRKQPQARRHRPRWRNAA 402


>gi|330830109|ref|YP_004393061.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565]
 gi|328805245|gb|AEB50444.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii
           B565]
          Length = 431

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 155/404 (38%), Positives = 234/404 (57%), Gaps = 7/404 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P+++ AV D GY + TP+Q + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFDFAPEILRAVSDCGYQEMTPVQQQAIPAIRRGRDVLASAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L    A V+       IL PTRELAAQVA N   + K  ++T   ++GG   + Q KK
Sbjct: 61  QRLVDNPAPVQPSNARVLILTPTRELAAQVASNINDFAKYLDITTITIVGGGKQDVQAKK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ GA +++ TPGR+L+H     L ++ +E LV+DEADR+LDMGF   +Q I   V  TR
Sbjct: 121 LKAGAHIIVATPGRLLEHLTACNLSLSGVECLVMDEADRILDMGFSADVQKILQAVNKTR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +D ++K++   L  P+ + VN  +STA+T+ H          K+   L   
Sbjct: 181 QNLLFSATFSDAVKKLANLMLDRPQIVSVNKQNSTADTVSHTVYPVEQ---KRKRELLSE 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +   +  ++F + +++   L   L   G     +HG   Q +R + L  F EG +++
Sbjct: 238 LIGKQNWQQVLVFASTRESCDVLVEELNLDGIKSAVVHGEKAQGNRRRALREFMEGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDIPD+ +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIPDLEYVVNYDLPFLAEDYVHRIGRTGRAGKRGMAISFVSREEERTLL 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
            IE LI +K+  +      ++   E I   Q    R+    PQ+
Sbjct: 358 EIEALIGQKIRRIMVPGYEVSSRDELIKQLQER--RRFGKRPQR 399


>gi|237743040|ref|ZP_04573521.1| ATP-dependent RNA helicase [Fusobacterium sp. 7_1]
 gi|229433600|gb|EEO43812.1| ATP-dependent RNA helicase [Fusobacterium sp. 7_1]
          Length = 528

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 136/368 (36%), Positives = 210/368 (57%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F DLGLS KV+  +   GY  PTPIQ  TIP +L+   D+ G AQTGTGKTA+F LP++
Sbjct: 9   EFRDLGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E     +   + ++L PTRELA QVA+       +  + V  + GG   + Q K ++
Sbjct: 69  ENFEN----LEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR++D   R  L +N+++  ++DEAD ML+MGFI  I+ I +     ++ 
Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFIEDIEKILTFTNEDKRM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM DE+ KV++N ++  + + V +   T +  E      +    +        + 
Sbjct: 185 LFFSATMPDEIMKVAKNHMKEYEVLAVKSRELTTDLTEQ---IYFEVNERDKFEALCRII 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  GIIFC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I ++V
Sbjct: 242 DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T +  ++ + +  I
Sbjct: 302 ATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 361

Query: 361 EKLIEKKV 368
           +K ++K++
Sbjct: 362 QKAVKKEI 369


>gi|255691171|ref|ZP_05414846.1| ATP-dependent RNA helicase RhlE [Bacteroides finegoldii DSM 17565]
 gi|260623074|gb|EEX45945.1| ATP-dependent RNA helicase RhlE [Bacteroides finegoldii DSM 17565]
          Length = 374

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 150/372 (40%), Positives = 224/372 (60%), Gaps = 5/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL +   ++ A+ + GY+ PT IQ K IP  L + D+ G AQTGTGKTASF +P++
Sbjct: 1   MTFRDLNIIEPILKAIEEKGYIAPTSIQEKAIPAALAKRDILGCAQTGTGKTASFAIPII 60

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L+  +   + +  + LIL PTRELA Q+++  + Y K   +   ++ GG+    Q   
Sbjct: 61  QHLQANKETDKRQGIKALILTPTRELAMQISECIDDYSKYTRVRHGVIFGGVNQRPQVDM 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD  N+G + + NIE  V+DEADRMLDMGFI  I+ I   +P  +
Sbjct: 121 LRKGIDILVATPGRLLDLINQGHIHLTNIEYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM D +  ++++ L+NP +I +   SST ++I       Y    K+ + L   
Sbjct: 181 QTLFFSATMPDSIIALTKSLLKNPVKIYITPKSSTVDSI---KQIIYFVEKKEKSQLLIS 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   ++ +IF   K N   +   L K G    AIHGN  Q +R   L NFK G  ++
Sbjct: 238 ILQKAEDRSVLIFSRTKHNADKIVRILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTKV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G A T  ++E+ K ++
Sbjct: 298 MVATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNEGTALTFCSQEERKLVN 357

Query: 359 AIEKLIEKKVDW 370
            I+KL  KK++ 
Sbjct: 358 DIQKLTGKKLNK 369


>gi|295662382|ref|XP_002791745.1| ATP-dependent RNA helicase DBP2 [Paracoccidioides brasiliensis
           Pb01]
 gi|226279871|gb|EEH35437.1| ATP-dependent RNA helicase DBP2 [Paracoccidioides brasiliensis
           Pb01]
          Length = 547

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 129/380 (33%), Positives = 211/380 (55%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ +PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 130 TFDEAGFPQYVMTEVKAQGFARPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 189

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 190 HINAQPLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQIRDL 249

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 250 TRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 309

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T ++SAT   ++++++++FL +  ++ + +   +A       V   +++ K+  + + L 
Sbjct: 310 TCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRERMAKHLE 369

Query: 240 QSQDTMKNGIIFCNQKKNV-VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  D     I+     K V  ++   L + G+   +IHG+  Q  R  +L+ FK G   +
Sbjct: 370 RIMDDKNAKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPI 429

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A TL   ++ K   
Sbjct: 430 MVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQAR 489

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    ++  L+ +
Sbjct: 490 DLVAILNESKQQIDPRLAEM 509


>gi|50121729|ref|YP_050896.1| ATP-dependent RNA helicase RhlE [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612255|emb|CAG75705.1| putative ATP-dependent RNA helicase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 483

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 160/449 (35%), Positives = 249/449 (55%), Gaps = 22/449 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGLS  ++ A+ + GY  PTP+Q + IP+VL+  D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFDSLGLSADILRAIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 60  ----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                   +      R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    Q
Sbjct: 61  QLLTSREAQNKGKGRRPVRALILTPTRELAAQIDENVKAYSKYLPLRSLVVFGGVSINPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P
Sbjct: 121 MMKLRGGVDILVATPGRLLDLEHQRAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT +DE++ ++   L NP  +EV   +S +E +         +  ++    
Sbjct: 181 AKRQNLLFSATFSDEIKALANKLLTNPASVEVVRRNSPSELVTQNVHFVDKRRKRELLSQ 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 ++  +  ++F   K    +L   LEK G +  AIHGN  Q +R + L+NFK+G 
Sbjct: 241 L---IGENNWQQVLVFTRTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANFKDGG 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K
Sbjct: 298 IRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCVDEHK 357

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI--------------AQHNHARKNNPIPQ 401
            +  IE+L+++++  +  +    +P ++   I              A+    R  +  P+
Sbjct: 358 LLRDIERLLKREIPRIAIEGYEPDPSIKAEPIVNGRQGSRGGGSGGARSASPRAPSGAPR 417

Query: 402 KSTGFDRRKKNYSSQKSHIPLKESEKISK 430
             +    R +    ++S    ++  K S 
Sbjct: 418 GQSERSERSQGQGERRSADANRQPRKPSG 446


>gi|311032368|ref|ZP_07710458.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. m3-13]
          Length = 481

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 135/408 (33%), Positives = 232/408 (56%), Gaps = 13/408 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L   +V A+    Y+KPT +Q + IP  L + D+   +QTG+GKTA+F +P+  
Sbjct: 4   TFQQFNLGEDIVKALKSLNYLKPTNVQEEVIPKALAKSDIIVKSQTGSGKTAAFAVPLCD 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++     +   P+ L+L PTRELAAQV D+    G+   +    + G   F+ Q  +L++
Sbjct: 64  LVHWEENK---PQALVLTPTRELAAQVKDDITNIGRYKRVKATAIYGKQSFQRQKLELKQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + +++ TPGR+LDH  +G L ++ +E LVIDEAD ML+MGFI  +++I  ++P +R T+
Sbjct: 121 KSHIVVGTPGRVLDHLEKGTLDVSRLEYLVIDEADEMLNMGFIDQVESIIQMLPKSRVTM 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++++S  ++ NP  IE+ +   T + IEH +        K      + +  
Sbjct: 181 LFSATLPEDIKQLSNQYMTNPVFIEIESGGLTTDRIEHIWYEVGEGEKKFLL--LKDITV 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + I+FC  ++ V  +  +L + G+    +HG + Q  R  +++ FK G  + ++A
Sbjct: 239 VENPDSCIVFCATQEEVDKVHRNLHRAGYPCGKLHGGLVQEDRFSVMNAFKRGEFRYLIA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RG+DI D+  V N+D+P+  E ++HRIGRT RAG+ GKA TL++  +  H++ IE
Sbjct: 299 TDVASRGIDIEDISLVINYDIPSDKERFVHRIGRTARAGKSGKAITLISTSEHHHLEEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK--NNPIPQKSTGFD 407
             I  K+           P  E +  A+ +   K  N PI +++ G  
Sbjct: 359 DFIGIKISRAEA------PKREAVARAETSFLVKLENRPIKKENKGAK 400


>gi|322420867|ref|YP_004200090.1| DEAD/DEAH box helicase domain-containing protein [Geobacter sp.
           M18]
 gi|320127254|gb|ADW14814.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18]
          Length = 467

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 153/417 (36%), Positives = 230/417 (55%), Gaps = 23/417 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF    L PKV   V   GY+ PTPIQ++ IP V+   DV G+AQTGTGKTA+F LP+L
Sbjct: 1   MDFKQFNLHPKVQAGVEAVGYLTPTPIQLQAIPPVMAGQDVLGLAQTGTGKTAAFGLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +G       R L+L PTRELA Q+ ++     +   L    + GG+    Q KKL+
Sbjct: 61  HRLVEGGR--GQVRALVLAPTRELAEQINESLNALAQQTRLKSITVYGGVNINTQIKKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+++  PGR+LDH ++G + ++ +E+LV+DEAD+M DMGF+P ++ I   +P  RQ 
Sbjct: 119 EGTDIVVACPGRLLDHISQGTVNLSKVEVLVLDEADQMFDMGFLPDVRKILRALPGKRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSATM D++++++   L  P  ++V+  +  A      +       +     L +   
Sbjct: 179 LMFSATMPDDIRRLAHEILCRPVTVQVSRTAPAATVSHALYPVGQHLKTPLLFELLK--- 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ +IF   K     +   LEK G+   ++ GN+ Q  R   L  F++GT Q+MV
Sbjct: 236 -HTDTESVLIFTKTKHRAKRVGEQLEKSGYKATSLQGNLSQNRRQAALDGFRDGTYQIMV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+D+P+  E Y HRIGRTGRA + G AFT+V  ED   + +I
Sbjct: 295 ATDIAARGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTGEDEAMVRSI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           E+++  K++            LE  D A         P PQK   F R  +    +K
Sbjct: 355 ERVLGAKIERRR---------LEGFDYAV--------PAPQKDAEFARAPREPQRRK 394


>gi|134034065|sp|A2QC74|DBP2_ASPNC RecName: Full=ATP-dependent RNA helicase dbp2
 gi|134056301|emb|CAK37534.1| unnamed protein product [Aspergillus niger]
          Length = 565

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 128/380 (33%), Positives = 208/380 (54%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ +PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 138 TFDEAGFPQYVLSEVKAQGFDRPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 197

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 198 HINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDL 257

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 258 SRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQ 317

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T ++SAT   E+++++ +FL +  ++ + +   +A       V   + + K+  +++ L 
Sbjct: 318 TCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLE 377

Query: 240 QSQDTMKNGIIFCNQKKN-VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   N  +     K     +   L + G+   +IHG+  Q+ R  +L+ FK G   +
Sbjct: 378 KIMENRANKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPI 437

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A T    ++ K   
Sbjct: 438 MVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQAR 497

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    ++  L+ +
Sbjct: 498 DLVTILTEAKQQIDPRLAEM 517


>gi|126665223|ref|ZP_01736206.1| ATP-dependent RNA helicase DeaD [Marinobacter sp. ELB17]
 gi|126630593|gb|EBA01208.1| ATP-dependent RNA helicase DeaD [Marinobacter sp. ELB17]
          Length = 504

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 162/465 (34%), Positives = 245/465 (52%), Gaps = 31/465 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+LGL+P V+ AV   GY  PTPIQ ++IP +L    + G+AQTGTGKTA+F LP+L
Sbjct: 4   LSFAELGLNPAVLEAVTAVGYETPTPIQAQSIPALLSGRHLLGVAQTGTGKTAAFALPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + ++     V  P+ L+L PTRELA QVA+ F  Y         L I  G  F  Q K L
Sbjct: 64  SRVDPN---VNAPQILVLAPTRELAIQVAEAFSTYASKLPNFHVLPIYGGQDFFPQIKGL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA V++ TPGR+LDH  +G L ++N++ LV+DEAD ML MGFI  ++ I S  P   Q
Sbjct: 121 RRGAHVIVGTPGRMLDHLRKGTLKLDNLKALVLDEADEMLRMGFIDDVEAILSKTPDNCQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  +++KV++ +L++   + + + S T + I          Y+++       +
Sbjct: 181 RALFSATMPPQIKKVAQTYLKDAVEVRIESASRTVDAI---SQYVLPVYAERKLDALTRI 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   + L   L  +G +   ++G+++QR R + + + K G   ++
Sbjct: 238 LEVEPFDASIIFVRTKAETIVLAEKLAARGHAAAPLNGDLNQRQREQTVEDLKRGKKDIV 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+P + HV N+DVP   E YIHRIGRTGRAGR GKA  LV   +   +  
Sbjct: 298 VATDVAARGLDVPRITHVINYDVPYDTEAYIHRIGRTGRAGRDGKAILLVTPRERSWLRT 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E+     ++    +L S    L+K+ + Q            +  GF   +K        
Sbjct: 358 LERATNATMEAY--ELPS-PAALQKMRVDQ---------FESQLVGFAEDRKL------- 398

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
                S+ ++ L    + N+ D     G +   +     G L  +
Sbjct: 399 -----SKAMAMLDDIAERNEMDITMVAGALACMLEATQPGSLPLE 438


>gi|238784236|ref|ZP_04628248.1| ATP-dependent RNA helicase rhlE [Yersinia bercovieri ATCC 43970]
 gi|238714803|gb|EEQ06803.1| ATP-dependent RNA helicase rhlE [Yersinia bercovieri ATCC 43970]
          Length = 451

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 164/449 (36%), Positives = 249/449 (55%), Gaps = 8/449 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY+ PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L + +  +   R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    Q  
Sbjct: 61  QLLNQNQEPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I            ++      
Sbjct: 181 RQNLLFSATFSDEIKGLASKLLHNPVSVEVARRNTASEQITQSVHFVDKNRKREL---LS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G I+
Sbjct: 238 QMIGEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE+L+++++  +  D    +P ++   I      R              R +N     
Sbjct: 358 RDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGRGAQRPGMGRGSSAGRPQNGGGAA 417

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFR 446
                + S    + Q D Q   A      
Sbjct: 418 GRGDSRNSR--PRSQADGQRRPAGPSSRG 444


>gi|23011993|ref|ZP_00052190.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 551

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 146/407 (35%), Positives = 232/407 (57%), Gaps = 7/407 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL+  ++ A+ +AGYV PTPIQ + +P  ++  D+CGIAQTGTGKTA+F LP+L 
Sbjct: 41  QFTDFGLAEPILRALGEAGYVSPTPIQTQALPPAMEGRDLCGIAQTGTGKTAAFALPILH 100

Query: 62  ILEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L     R       +L   PTRELA+Q+A++F  YG++   T  ++ GG+    Q + +
Sbjct: 101 RLSLENRRAPRRGCRVLVLSPTRELASQIAESFSDYGRHLPYTSTVVFGGVNISRQERAI 160

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR++D  +R  L +  +EILV+DEAD+MLD+GFI  ++ I  ++P  RQ
Sbjct: 161 APGVDILVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPARRQ 220

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +L FSATM   +  +++ +L NP ++ V   ++TAE ++   +  +    +        +
Sbjct: 221 SLFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCHTGAKQAL---LNHV 277

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                ++  ++F   K     +   L+K G    AIHGN  Q  R + L+ F++G+ +++
Sbjct: 278 LRDPKIERVLVFTRTKHGADRVVRGLDKVGIVGAAIHGNKSQPQRERALAAFRDGSCRVL 337

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV N+D+PN  E+Y+HRIGRT RAG  G+A +    E+  ++  
Sbjct: 338 VATDIAARGIDVEGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRD 397

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI-PQKSTG 405
           IE+   +KV  + G      PP  +          +  P  PQ   G
Sbjct: 398 IERTTRQKVPVV-GFPEGFQPPSRQEAQETAAEEARRPPRQPQGRPG 443


>gi|330923164|ref|XP_003300130.1| hypothetical protein PTT_11286 [Pyrenophora teres f. teres 0-1]
 gi|311325925|gb|EFQ91808.1| hypothetical protein PTT_11286 [Pyrenophora teres f. teres 0-1]
          Length = 483

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 129/374 (34%), Positives = 208/374 (55%), Gaps = 6/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ KPT IQ +  P+ L   DV G+A+TG+GKT ++ LP + 
Sbjct: 62  TFDEAGFPSYVMNEVKAQGFAKPTAIQAQGWPMALSGRDVVGVAETGSGKTLTYCLPAIV 121

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 122 HINAQPLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQIRDL 181

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 182 ARGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 241

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T ++SAT   E+++++ ++ ++  ++ + +   +A       V    ++ K+  + + L 
Sbjct: 242 TCMWSATWPKEVRQLAADYQKDWIQVNIGSMDLSANHRIQQIVEVCTEFEKRDRMAKHLE 301

Query: 240 QSQDTMKNGIIFCNQKKNV-VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  N I+     K V   +   L + G+   +IHG+  Q  R  +L+ FK G   +
Sbjct: 302 TIMSDKDNKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPI 361

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ ++ HVFN+D PN +E+Y+HRIGRTGRAG +G A TL   ++ K   
Sbjct: 362 MVATDVASRGIDVRNITHVFNYDYPNNSEDYVHRIGRTGRAGANGTAITLFTTDNSKQAR 421

Query: 359 AIEKLI---EKKVD 369
            + +++   ++++D
Sbjct: 422 DLVQILTESKQQID 435


>gi|254506544|ref|ZP_05118685.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
 gi|219550417|gb|EED27401.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
          Length = 419

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 148/389 (38%), Positives = 221/389 (56%), Gaps = 9/389 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL P ++  +   G+ +PT +Q + IP VL+  DV   AQTGTGKTA+F LP++ 
Sbjct: 4   QFESLGLCPTILSTLSSLGFEQPTEVQTQAIPHVLEGKDVLAGAQTGTGKTAAFGLPIIQ 63

Query: 62  ILEKGRARVRMPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L +  A+       +      PTRELA QV DN  +Y +   L +    GG     Q +
Sbjct: 64  KLIESEAKRDPQSNDVRALVLVPTRELAQQVFDNLVQYAQATELKIVAAYGGTSMNVQTR 123

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE+G D+LI TPGR++DH     + +   E LV+DEADRMLDMGF+P IQ I       
Sbjct: 124 NLEQGCDILIATPGRLIDHMFCKNVSLLKSEFLVLDEADRMLDMGFMPDIQRILKRFNAV 183

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL FSAT    ++ ++      P  ++V+  +STAET+       Y    K+ A L  
Sbjct: 184 RQTLFFSATFDKRIKNIAYKLQSEPVEVQVSASNSTAETV---KQMVYPVDKKRKAELLA 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L      +  ++F   K+    L   L+  G    +I+G+  Q +R K L +FK G I+
Sbjct: 241 YLIGSRNWQQVLVFTKTKQGSDALVKELKLDGIKAASINGDKSQGARQKALDDFKAGKIR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++A+D+AARGLDI ++  V NFD+P +AE+Y+HRIGRTGRAG+ G A + +++++   +
Sbjct: 301 ALIATDVAARGLDIQELEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAVSFMSRDEHYLL 360

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLEK 384
           +AIE+L++ ++  +WL G   SL   +E 
Sbjct: 361 EAIERLLDTRLPQEWLQGFEPSLVEEVEP 389


>gi|225159079|ref|ZP_03725387.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV2]
 gi|224802337|gb|EEG20601.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV2]
          Length = 451

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 144/370 (38%), Positives = 213/370 (57%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL   +V  V   GYV PTP+Q++ IP+VL   D+   AQTGTGKTA+F LP+ 
Sbjct: 1   MPFSKLGLPSSLVRGVQAMGYVDPTPVQLRAIPVVLAGRDLVASAQTGTGKTAAFALPV- 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +   G  R   PR L+LEPTREL AQV   F  +G+  ++   ++ GG+ +  Q   L 
Sbjct: 60  -LARLGGHRPGGPRVLVLEPTRELGAQVETAFRDFGRFTDVRSTIIHGGVGYGKQRSDLR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D++I T GR++D     ++ ++++E+L++DE DRMLDMGFI  ++ I  L P  RQT
Sbjct: 119 AGTDIVIATVGRLMDFIKEKEIRLDSVEVLILDEVDRMLDMGFINDVKRIVGLCPKQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+  E++ V+   LQNP+RIE+    +  E+++H       +             
Sbjct: 179 LFFSATIPPEIEDVARFALQNPERIEIGRARTVNESVKHAIYPVTFEQKFDLLCAILDKL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ IIF   K     +   L+ +  SV  +H N  Q  R++ L  FK G  ++MV
Sbjct: 239 DY---ESVIIFSRTKHGADRIARRLKSKKHSVAVLHANRSQNQRVEALEGFKNGRYEVMV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV N+DVP   E+Y+HRIGRTGRA   G AF LV  ++   +  I
Sbjct: 296 ATDIAARGIDVAGVSHVINYDVPENPEDYVHRIGRTGRAMAVGDAFMLVTPDEAGDVHDI 355

Query: 361 EKLIEKKVDW 370
           ++ I  K+ +
Sbjct: 356 QRFIGAKIPF 365


>gi|90413176|ref|ZP_01221172.1| putative ATP-dependent RNA helicase SrmB [Photobacterium profundum
           3TCK]
 gi|90325867|gb|EAS42319.1| putative ATP-dependent RNA helicase SrmB [Photobacterium profundum
           3TCK]
          Length = 419

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 126/371 (33%), Positives = 200/371 (53%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF++L L   ++ A+ + GY +PT +Q + IP  L   DV   A TGTGKTA+F+LPM+ 
Sbjct: 3   DFSELELDSALLNAIEEIGYTRPTEVQAQAIPHALDGRDVLASAPTGTGKTAAFLLPMIQ 62

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L     +   P  + IL PTRELA Q+AD+     KN +L +  + GGI ++   + L 
Sbjct: 63  HLLDFPRKKPGPARVLILTPTRELAIQIADHARALAKNTHLKIFTITGGISYDDHAELLG 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR++++    +     IE L++DEADRMLDMGF   +  I     + RQ+
Sbjct: 123 KTQDIVVATPGRLMEYVESERFDCRAIECLILDEADRMLDMGFTKIVDRINHECRWRRQS 182

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     +++ SE  L+ P  +         + I   ++       K         
Sbjct: 183 LLFSATLEGKGVREFSETILKEPVEVNSAPSRRERKKIHQLYLRCDDMGHKLA---LLEQ 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  I+F   +  +  L   L         I G + Q SR   ++ F++G + ++
Sbjct: 240 ILKHQAERSIVFVKTRDRLATLRDQLASMNVKCSWIQGEMAQLSRNNAIARFRDGDVNIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PD+ HV NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D   I+ 
Sbjct: 300 IATDVAARGIDLPDISHVINFDMPRTADVYLHRIGRTARAGKKGIAISLVEAHDQAMIER 359

Query: 360 IEKLIEKKVDW 370
           + + +E++V  
Sbjct: 360 VSRYMEEEVPE 370


>gi|293391525|ref|ZP_06635859.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952059|gb|EFE02178.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 443

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 133/434 (30%), Positives = 221/434 (50%), Gaps = 7/434 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + FAD  L+P+++ A+   GY +PT IQ +TIP  +   DV G A TGTGKTA+F+LP +
Sbjct: 5   IQFADFDLAPELLNALQKKGYQRPTAIQQETIPAAMGGGDVLGSAPTGTGKTAAFLLPAI 64

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR L+L PTRELA QVA+  ++      L++A + GG+ ++   +  
Sbjct: 65  QHLLDYPRRKPGAPRVLVLTPTRELAMQVAEQAKELACFTKLSIATITGGVAYQNHGEIF 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+++ TPGR+L +          +EIL+ DEADRML MGF    + I +   + +Q
Sbjct: 125 NKNQDIVVATPGRLLQYIKEENFDCRTVEILIFDEADRMLQMGFGQDAEKIAAETRWRKQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT+  +L +       N     +    S  E  +      +A   +    L    
Sbjct: 185 TLLFSATLEGDLLEDFAARTLNEPVK-IEAEPSRRERKKIQQWYYHADSHEHKFKLLARF 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+ +  GI+F  +++ V  L  +L K+G     + G + Q  R   +   K G + ++
Sbjct: 244 IEQEQVSKGIVFVRRREEVRELAENLRKRGIRSAYLEGEMAQTQRNNAIDKLKNGVVTVL 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++D++ARG+DI DV H+ NFD+P  A+ Y+HRIGRT RAG+ G A + V   D + +  
Sbjct: 304 VSTDVSARGIDIDDVSHIMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYRLLGK 363

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           I++      + L   +     P  K    +    +  +   +      R  +  + +K  
Sbjct: 364 IKRYTG---ELLKARVIEGLEPRTK--APKDGEIKTVSKKQKAKKLEKREARKKADKKVK 418

Query: 420 IPLKESEKISKLQQ 433
              ++ + I K ++
Sbjct: 419 QRHQDRKNIGKRRK 432


>gi|149909181|ref|ZP_01897838.1| ATP-dependent RNA helicase [Moritella sp. PE36]
 gi|149807705|gb|EDM67651.1| ATP-dependent RNA helicase [Moritella sp. PE36]
          Length = 432

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 145/375 (38%), Positives = 224/375 (59%), Gaps = 4/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  GL+  +  AV + GY +PTPIQ K IP +L   ++   AQTGTGKTASFVLP+L
Sbjct: 29  MPFSKFGLNKLITQAVAELGYEQPTPIQQKAIPAILSGKNLIAAAQTGTGKTASFVLPLL 88

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       R +  R LIL PTRELA QVA+N E+YGK+ +LT   + GG+  + Q ++L
Sbjct: 89  QMFSHKHTLRAKRIRALILTPTRELAIQVAENVEQYGKHLHLTSMAMYGGVDMDPQKQRL 148

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD  ++  L  + +E+LVIDEADRMLDMGF+  I  I   +P  RQ
Sbjct: 149 IEGVDILVATPGRLLDMAHQRALHFDELEVLVIDEADRMLDMGFVNDINKIIERLPQERQ 208

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++++++ +++  +     I +   ++TA  I               + L   +
Sbjct: 209 NLLFSATLSNKVRFLAKTAINYALEISIEPENTTAPEI---DQWLTVVDKDVKSALLSHM 265

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  +IF   K+    L   LEK+G    + H    Q  R ++L+ FK G +  +
Sbjct: 266 IIENDWKQALIFIETKRGAAKLVSQLEKRGIKAESFHSGRSQAMREQLLAEFKAGELSFL 325

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +A+RG+DI D+  V N+D+P    +Y+HRIGRTGRAG  G+A + V+++D +++ A
Sbjct: 326 VATGVASRGIDIDDLDRVVNYDLPEEQADYVHRIGRTGRAGASGEAISFVSRDDFRNLCA 385

Query: 360 IEKLIEKKVDWLNGD 374
           IE+L++  ++    +
Sbjct: 386 IEQLLDHVIERKEVE 400


>gi|237806840|ref|YP_002891280.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237499101|gb|ACQ91694.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 489

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 170/447 (38%), Positives = 247/447 (55%), Gaps = 21/447 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLS  ++ AV D GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTELGLSEPLLRAVKDKGYDTPSPIQLQAIPAVLAGQDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G   R    R L+L PTRELAAQVA++   YGK   L   ++ GG+    Q   +
Sbjct: 61  HRLSRGNPARSNAVRALVLTPTRELAAQVAESVTTYGKYLPLKSVVVFGGVNINPQMLAM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR+LD  ++  L    +E+L++DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 RKGADVLVATPGRLLDLVSQNALHFRQLEVLILDEADRMLDMGFIRDIRKIINMLPKDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT +DE++ +++  L  P +I+V   ++TAETI+                     
Sbjct: 181 TLMFSATFSDEIRTLAKGLLNEPVQIDVAPRNTTAETIKQTICPVDKGRKPALLCHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  ++F   K     L   LE  G    AIHGN  Q +R + LS FK+G+++++
Sbjct: 238 IKHNNWQQVLVFMRTKHGANKLVTQLETAGIQAAAIHGNKSQGARTRALSGFKDGSVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N+++PN AE+Y+HRIGRTGRAG  G A +LV+ ++   +  
Sbjct: 298 VATDIAARGIDIAQLPQVVNYELPNIAEDYVHRIGRTGRAGMEGHAISLVSADEQPLLVD 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ-------------HNHARKNNPIPQKSTGF 406
           +EKLI++ +     D      P+     AQ              +  R   P  Q+S   
Sbjct: 358 VEKLIKQILPREEFDGFKPQNPVAMTTEAQLTRPVKKPKKPKMFDDGRSQEPRQQRSP-- 415

Query: 407 DRRKKNYSSQKSHIPLKESEKISKLQQ 433
             R       K+H P     +  + +Q
Sbjct: 416 --RSSQGEQHKAHSPHTGQPRPHQPKQ 440


>gi|152991450|ref|YP_001357172.1| DEAD-box ATP dependent DNA helicase [Nitratiruptor sp. SB155-2]
 gi|151423311|dbj|BAF70815.1| ATP-dependent RNA helicase, DEAD-box family [Nitratiruptor sp.
           SB155-2]
          Length = 471

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 139/374 (37%), Positives = 208/374 (55%), Gaps = 14/374 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+D  L P+++ A+  AG+ +P+PIQ + IP+VL   D+ G A TGTGKTA+F LP+L
Sbjct: 1   MTFSDFNLKPQIMKAIEQAGFKEPSPIQKEAIPVVLAGKDMVGQAHTGTGKTAAFALPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +LE           L++ PTRELA QV+D   + GK   +  A + GG  +  Q   + 
Sbjct: 61  NMLELD----GEVEALVIVPTRELATQVSDEIFRLGKYLGIKTATVYGGSSYSRQLNHIA 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             A V+      +     +   +  N + +V+DEAD MLDMGF+  I+ I + +P  RQT
Sbjct: 117 NAAVVVATPGRLLDLL--KSGKIELNPKFVVLDEADEMLDMGFLDDIKAIFNYLPTNRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++++  L +P+ I +     T   I+  +         +  +      
Sbjct: 175 LLFSATMPQAIKELAQQILHSPEFISITKKEVTNVNIKQFYYVVDEHERDEALIRLL--- 231

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIFC  K  V  L   LE QG+S   +HG++ QR R + +  FK G I++++
Sbjct: 232 DYKNPTKSIIFCRMKIEVDRLAQFLEAQGYSAKGLHGDMQQRQREETIKAFKRGNIEILI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI DV HVFN+ +P   E+Y+HRIGRTGRAG+ G A +LV   + K +  I
Sbjct: 292 ATDVAARGLDISDVSHVFNYHIPFDPESYVHRIGRTGRAGKEGIAISLVTPHEFKQLLRI 351

Query: 361 EK-----LIEKKVD 369
           +K     LI K++ 
Sbjct: 352 QKEVGSSLINKEIP 365


>gi|332306838|ref|YP_004434689.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174167|gb|AEE23421.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 428

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 138/406 (33%), Positives = 230/406 (56%), Gaps = 10/406 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+ L L+P +  A+   GY K TPIQ K I +  +  DV   AQTGTGKTA+F +P+L
Sbjct: 1   MNFSSLDLAPALQQAIDACGYKKMTPIQQKAIVVARRGRDVLASAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +           T   IL PTRELA Q+A N   Y +  +++V  L GG+    Q  K
Sbjct: 61  QQMLDKPKETVSGTTRAIILTPTRELAEQLASNIANYAQFTDISVTALYGGVKLGGQASK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D++I TPGR+L+H     + + N+E +V+DEADRMLDMGFI  ++ + + +   R
Sbjct: 121 LKAGVDIVISTPGRLLEHMTLKNIELANVEFVVLDEADRMLDMGFISDVRQMLAQIRAVR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT++  + +++   L+N + I     +S A+T++H       +   +       
Sbjct: 181 QTLLFSATISPTVNELAHKLLKNHEEIRATQLNSAADTVQHVMYPVSEEDKIRLFKTLLA 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            Q+       ++F + K+    L  +L+    +    H +  Q +R + +++FK   +Q+
Sbjct: 241 EQNW---YQVLVFTSTKEQADKLMAALKNSKINAGVCHADKSQGARRRAIADFKSAKLQV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+++AARG+DI  + HV N+++P   E+Y+HRIGRTGRAG+ G A + V++E+ + ++
Sbjct: 298 LIATEVAARGIDIQGLDHVVNYNLPYLPEDYVHRIGRTGRAGQQGNAISFVSREEERTVE 357

Query: 359 AIEKLIEKKVDWLNGD---LSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            IE+LI  K+  ++      SS    L+   + +H+ + + N   Q
Sbjct: 358 RIERLINCKIKRISRPDFAFSSRESLLKT--VRKHSKSSRTNKATQ 401


>gi|188534378|ref|YP_001908175.1| ATP-dependent RNA helicase RhlE [Erwinia tasmaniensis Et1/99]
 gi|188029420|emb|CAO97297.1| Putative ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99]
          Length = 468

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 158/390 (40%), Positives = 240/390 (61%), Gaps = 6/390 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  T---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                        R  R LIL PTRELAAQ+ +N + Y K  ++   ++ GG+    Q  
Sbjct: 61  QLLSSHNPHPKGRRPVRALILTPTRELAAQIGENVQDYSKYLDMRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  L ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNALDLSQVEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++E  L NP+++EV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTASEQV---TQHVHLVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + LS+FKEG I+
Sbjct: 238 LLIGRGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKEGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++ HV N+++PN +E+Y+HRIGRTGRA   G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGIDIEELPHVVNYELPNVSEDYVHRIGRTGRAAAVGEALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
             IE+L+++++  +  +    +P ++   I
Sbjct: 358 RDIERLLKREIPRMAVEGFEPDPSIKAEPI 387


>gi|170782231|ref|YP_001710564.1| cold-shock DEAD-box RNA helicase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156800|emb|CAQ01964.1| cold-shock DEAD-box RNA helicase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 585

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 140/373 (37%), Positives = 216/373 (57%), Gaps = 7/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLGLS +V+ A+ D GY  P+ IQ  TIP +L   DV G+AQTGTGKTA+F LP+L+
Sbjct: 18  TFSDLGLSDQVLKALKDVGYETPSAIQAATIPSLLSGRDVLGVAQTGTGKTAAFALPILS 77

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+  +   + P+ L+L PTRELA QV + FE+Y         L +  G  +  Q   L 
Sbjct: 78  NLDVAQ---KTPQALVLAPTRELALQVCEAFERYASGMRGVHVLPVYGGQGYGVQLSALR 134

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGRI+DH ++G L ++ ++ LV+DEAD ML MGF   ++ I +  P ++Q 
Sbjct: 135 RGVHVVVGTPGRIMDHLDKGTLDLSQLKFLVLDEADEMLKMGFAEDVETILADTPKSKQI 194

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  +++++S  +LQ+P+ I V   ++T+      ++                 +
Sbjct: 195 ALFSATMPAQIRRISGKYLQDPEEITVKNKTTTSANTTQRYLMVSYPQKVDALTRILETE 254

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + M   I+F   K     L   L  +G++  AI G++ Q  R + +   K G + ++V
Sbjct: 255 NFEGM---IVFVRTKNETETLAEKLRARGYAAAAISGDVAQAQRERTVEQLKNGKLDILV 311

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A + V   + + + AI
Sbjct: 312 ATDVAARGLDVDRISHVVNYDIPIDTESYVHRIGRTGRAGRSGAAISFVTPRERRLLTAI 371

Query: 361 EKLIEKKVDWLNG 373
           EK   + +  +  
Sbjct: 372 EKATRQPLTEMRM 384


>gi|108761880|ref|YP_632259.1| putative ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK
           1622]
 gi|108465760|gb|ABF90945.1| putative ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK
           1622]
          Length = 501

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 152/374 (40%), Positives = 215/374 (57%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   ++ AV   GY  PTPIQ K IP  L   DV G+AQTGTGKTA+F LP+L
Sbjct: 1   MTFDDLQLHDTLLRAVKAEGYTTPTPIQQKAIPHALAGRDVLGVAQTGTGKTAAFALPIL 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                +      R  R L+L PTRELA QV D+F  YGK   L  A++ GG+    Q + 
Sbjct: 61  QRLSAKAPAGGARPVRCLVLTPTRELAGQVGDSFGTYGKGLPLRHAVIFGGVGQNPQVQT 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G DVL+ TPGR+LD   +G + + ++E+ V+DEADRMLDMGFI  ++ +   +P  R
Sbjct: 121 LRNGVDVLVATPGRLLDLMEQGFVSLRSLEVFVLDEADRMLDMGFIHDVRRVIKALPPKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSAT+  ++  ++ + L +P R+EV   SSTAET+         +  +        
Sbjct: 181 QTLFFSATLPPDIVDLARSILTDPIRVEVTPASSTAETVSQQVYFVEREQKRGLLTHLL- 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +  +   ++F   K     +   LE  G S  AIHGN  Q +R + L  F+ GT+++
Sbjct: 240 --KEGNIHRALVFTRTKHGANRVAKQLEGAGVSSAAIHGNKSQNARERALDEFRSGTLRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + +V N+D+PN  E Y+HRIGRTGRAG  G A +    E+  ++ 
Sbjct: 298 LVATDIAARGIDIDGLSYVVNYDLPNVPEQYVHRIGRTGRAGASGTAVSFCDAEERAYLR 357

Query: 359 AIEKLIEKKVDWLN 372
            IE+ I + V  + 
Sbjct: 358 DIERTIRRNVPVVE 371


>gi|194337138|ref|YP_002018932.1| DEAD/DEAH box helicase domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309615|gb|ACF44315.1| DEAD/DEAH box helicase domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 418

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 157/374 (41%), Positives = 225/374 (60%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  L +   ++ A+ + GY  PTPIQ + IP++LQ  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MEFKSLEIIDPILQALQEEGYTTPTPIQAEAIPIILQGTDLLGCAQTGTGKTAAFAIPIL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 K   + R  RTLI+ PTRELA Q+ ++F  YG++  LT  ++ GG+    Q   
Sbjct: 61  QLLSENKVYDKKRKIRTLIVTPTRELAIQIGESFNAYGRHTGLTNTVIFGGVNQNPQTAA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D++I TPGR+LD  N+G L + ++EILV+DEADRMLDMGFI  I+ I ++VP  +
Sbjct: 121 LIRGVDIVIATPGRLLDLLNQGFLSLRHVEILVLDEADRMLDMGFIHDIKKILAVVPKQK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+ K++   L NP ++ V   SST E I                     
Sbjct: 181 QSLFFSATMPAEIVKLAATILHNPSKVSVTPVSSTVEIINQSIYFVDKGNKNSL---LVD 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +K  ++F   K     +   LEK      AIHGN  Q +R + L NFK  T ++
Sbjct: 238 ILRDQAIKTALVFTRTKHGADKVVKILEKHNIKAEAIHGNKAQNARQRALFNFKAQTTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+ +V NF++PN AE Y+HRIGRTGRAG  G A +    E+ +++ 
Sbjct: 298 LVATDIAARGIDVDDLEYVINFEMPNIAETYVHRIGRTGRAGAKGTALSFCDAEEKEYLR 357

Query: 359 AIEKLIEKKVDWLN 372
            IEKLI KK+  ++
Sbjct: 358 DIEKLIAKKIPVID 371


>gi|187734531|ref|YP_001876643.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187424583|gb|ACD03862.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 423

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 158/423 (37%), Positives = 242/423 (57%), Gaps = 6/423 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++  + +  Y  PTPIQ   IPL+LQ  D+ G+AQTGTGKTA+F LP++ 
Sbjct: 5   TFRELGLSAPILRQLENLEYKTPTPIQAACIPLLLQNKDLMGLAQTGTGKTAAFALPLIQ 64

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                 G+   R  R LIL PTRELAAQ+ +N   Y +  +L+ A++ GG+ + +Q K+L
Sbjct: 65  QLSERSGKPPGRRVRALILSPTRELAAQIHENIRAYARGLHLSTAVIFGGVGYASQFKEL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR++DH  R  + ++ +E L++DEAD MLDMGF P ++ I S +P  R 
Sbjct: 125 AGGLDILVATPGRLIDHLERRTVSLDGVETLILDEADHMLDMGFAPALKKIVSKIPRKRH 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T +FSATM D ++++++  LQ P+ + V+ PSSTA+ +E       +Q  K+  L  +LL
Sbjct: 185 TQMFSATMPDNIRQLAQTLLQKPETVRVSPPSSTADRVEQFLCMVGSQSEKRL-LTLELL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+     +IF   +     L   L  + +   AIHG+  Q  R ++L  F+ G   ++
Sbjct: 244 KQQELPGRTLIFTRTRHGADRLASFLSGKDYPASAIHGDKSQGRRERMLREFRSGKTPVL 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  V N+D+P   E Y+HRIGRT RAG  G+A  L + E+I+    
Sbjct: 304 VATDIAARGIDVKDVRLVINYDLPEEPEVYVHRIGRTARAGAAGQAIALCSPEEIRKARN 363

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           + KL+ +    L    SS + P E   + +    R +    ++S      +K Y    S 
Sbjct: 364 VHKLLGR---LLPVHASSASVPAELRAVPEARRKRSSPMQEKRSAPRREPRKGYGRNGSR 420

Query: 420 IPL 422
              
Sbjct: 421 AEA 423


>gi|154313296|ref|XP_001555974.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
 gi|160380642|sp|A6RY31|DHH1_BOTFB RecName: Full=ATP-dependent RNA helicase dhh1
 gi|150849414|gb|EDN24607.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
          Length = 538

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 114/377 (30%), Positives = 183/377 (48%), Gaps = 7/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + + GY KP+PIQ + IP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFEDFSIKRELLMGIFEMGYEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPAL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +V+    LIL PTRELA Q +   +  G++  + V +  GG        +L+
Sbjct: 107 ERINPKNTKVQ---CLILVPTRELALQTSQVCKTLGQHLGINVMVTTGGTTLRDDILRLQ 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +    ++   + V+DEAD++L   F   I+ +    P  RQ 
Sbjct: 164 EPVHIIVGTPGRILDLAGKNVADLSECNMFVMDEADKLLSPEFTIVIEQLLQFHPKDRQI 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F                 T+            K+       L 
Sbjct: 224 MLFSATFPMTVKD----FSDKNMADPYEINLMDELTLRGITQFYAFVEEKEKVHCLNTLF 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMIQANRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L++ ED  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLISWEDRFNLYNI 399

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +   +  
Sbjct: 400 ERELGTEIAPIPQIIPK 416


>gi|262403813|ref|ZP_06080371.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
 gi|262350317|gb|EEY99452.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
          Length = 421

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 150/409 (36%), Positives = 229/409 (55%), Gaps = 11/409 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGL P ++  + D G V PTPIQ + IP VLQ  DV   AQTGTGKTA+F LP++
Sbjct: 6   ITFSQLGLDPHLLNTLSDLGIVNPTPIQQQAIPYVLQGKDVLAGAQTGTGKTAAFGLPLI 65

Query: 61  TILEKGRARVRMPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               +           I      PTRELA QV D+ + Y K   L +  + GG   + Q 
Sbjct: 66  QRFIEQPWVREENSKEIRALVLVPTRELAQQVLDSMQAYAKGTELKIVAVYGGTSMKVQL 125

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G D+LI TPGR+LDH +   L +  +E+LV+DEADRMLDMGF+P +Q +   +  
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSAT   +++ V+   +++P  ++V   +STAET+       Y    K+   L 
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPAEVQVTPSNSTAETV---QQMVYPVDKKRKRELL 242

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L      +  ++F   ++    L   L+  G    +I+G+  Q +R K L +FK G +
Sbjct: 243 SYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L++ ++   
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLVGLAVSLLSHDETPQ 362

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           ++AIE+L+  ++  +WL G   S  P + + +  + +  R       K+
Sbjct: 363 LEAIERLLNTRLPQEWLKGFEPS--PEVREENSPRRSSGRSAEKRKMKA 409


>gi|255722942|ref|XP_002546405.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404]
 gi|240130922|gb|EER30484.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404]
          Length = 483

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 138/421 (32%), Positives = 229/421 (54%), Gaps = 8/421 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L L P ++ ++ +  + KPTPIQ ++IP  L+  D+ G+AQTG+GKTA+F +P+L 
Sbjct: 69  TFKELNLVPDLLESIENMKFTKPTPIQSESIPHALEGKDIIGLAQTGSGKTAAFAIPILQ 128

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   +        L+L PTRELA Q+ + F+  G +  L  + ++GG+    Q + L R
Sbjct: 129 SLWHAQQPYF---GLVLAPTRELAFQIKETFDALGSSMGLRSSCIVGGMDMMDQARDLMR 185

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGRI+DH  +     + N++ LV+DEADR+LDM F P +  I  ++P  R T
Sbjct: 186 KPHIIVATPGRIMDHLEHTKGFTLKNLKYLVMDEADRLLDMDFGPALDKILKVIPTKRTT 245

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT++++K+    L NP R+ V++   TA+ +    +     Y     +      
Sbjct: 246 YLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLL--- 302

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   K+ I+F     +           GF+   +HG + Q  R+  L+ FK  T  +++
Sbjct: 303 NEFMSKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNTANILI 362

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V N+D+P  ++ YIHR+GRT RAGR GK+ +L+ + D++    I
Sbjct: 363 ATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRI 422

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE-KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           E ++  K+   +     +   L   +D A     R+   + +K  G +RR+    + +  
Sbjct: 423 ESVLGYKLPKEDKPPKEVLDALHIHVDKATAEAIRQTKELHEKRGGNNRRRNKDDADREE 482

Query: 420 I 420
            
Sbjct: 483 R 483


>gi|228915063|ref|ZP_04078662.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228844597|gb|EEM89649.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 447

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 146/440 (33%), Positives = 237/440 (53%), Gaps = 12/440 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 3   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++     V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 63  KIDPECGDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE           +      + + 
Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFVM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EK +   +     +     P ++++D       +       +    D R+ + S  K   
Sbjct: 357 EKTLGAPIQREIIE----QPKIKRVDENGKPLPKPAPKKSGEYRQRDSREGSRSGSKGRT 412

Query: 421 PLKESEKISKLQQDIQENDA 440
              +S   S+ + +   N  
Sbjct: 413 -RNDSRNSSRNENNRSFNKP 431


>gi|220931392|ref|YP_002508300.1| DEAD/DEAH box helicase domain protein [Halothermothrix orenii H
           168]
 gi|219992702|gb|ACL69305.1| DEAD/DEAH box helicase domain protein [Halothermothrix orenii H
           168]
          Length = 527

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 145/379 (38%), Positives = 225/379 (59%), Gaps = 9/379 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++L +S +++ AV D G+ + TPIQ K IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 4   VKFSELNISKEILKAVEDMGFEETTPIQTKAIPPILNGKDIIGQAQTGTGKTAAFGIPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++    R + P+ +IL PTRELA QVA+  ++  K       L +  G   + Q K L
Sbjct: 64  EKIDT---RNKKPQAIILCPTRELAIQVAEELKRLAKYKRSLYTLPVYGGQSIKRQIKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G  V+I TPGR++DH  RG L +++I  +V+DEAD MLDMGFI  I+ I   +P  RQ
Sbjct: 121 KKGVQVIIGTPGRVMDHMRRGTLNLSHINFVVLDEADVMLDMGFIDDIKTILKDIPNDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSAT+ + +  +S+ + +  + I++     T   IE  +             +   L
Sbjct: 181 TLFFSATIPETILDLSKRYQKKSQFIKIAHEKLTVPGIEQYYYEVRRSDK---LKVLTRL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               +    +IFCN +K V  L   L+ +G+   A+HG  +Q  R +++  F+ G I+++
Sbjct: 238 IDLYSPGLSLIFCNTRKMVEELNIQLQARGYLSDALHGGFNQNQRDRVMDKFRNGIIEIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V  VFN+DVP   + Y+HRIGRTGRAG+ GKAFT V  +DI  +  
Sbjct: 298 VATDVAARGIDVNGVEAVFNYDVPQDTDYYVHRIGRTGRAGKTGKAFTFVVGKDIYKLRD 357

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+K  + ++  +  D+ +L
Sbjct: 358 IQKYTKTRI--IKQDIPTL 374


>gi|161950038|ref|YP_404825.2| ATP-dependent RNA helicase DeaD [Shigella dysenteriae Sd197]
 gi|309785489|ref|ZP_07680120.1| cold-shock DEAD box protein A [Shigella dysenteriae 1617]
 gi|308926609|gb|EFP72085.1| cold-shock DEAD box protein A [Shigella dysenteriae 1617]
          Length = 629

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGQQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|81242624|gb|ABB63334.1| inducible ATP-independent RNA helicase [Shigella dysenteriae Sd197]
          Length = 646

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 24  TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 84  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 140

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 141 QGQQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 200

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 201 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 258 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 318 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 377

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 378 ERTMKLTIPEVELPNAEL 395


>gi|221199585|ref|ZP_03572629.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
 gi|221205515|ref|ZP_03578530.1| dead/deah box helicase [Burkholderia multivorans CGD2]
 gi|221174353|gb|EEE06785.1| dead/deah box helicase [Burkholderia multivorans CGD2]
 gi|221180870|gb|EEE13273.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
          Length = 487

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 161/373 (43%), Positives = 221/373 (59%), Gaps = 8/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+  ++ A+ + GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +            +   +  
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                   +K  I+FCN K     L   LE+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 L---RDRGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKKVD 369
           +  IEKLI++ ++
Sbjct: 369 LADIEKLIKRPLE 381


>gi|221211662|ref|ZP_03584641.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
 gi|221169023|gb|EEE01491.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
          Length = 495

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 161/373 (43%), Positives = 221/373 (59%), Gaps = 8/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+  ++ A+ + GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +            +   +  
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                   +K  I+FCN K     L   LE+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 L---RDRGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKKVD 369
           +  IEKLI++ ++
Sbjct: 369 LADIEKLIKRPLE 381


>gi|189351106|ref|YP_001946734.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
 gi|189335128|dbj|BAG44198.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
          Length = 487

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 161/373 (43%), Positives = 221/373 (59%), Gaps = 8/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+  ++ A+ + GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +            +   +  
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                   +K  I+FCN K     L   LE+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 L---RDRGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKKVD 369
           +  IEKLI++ ++
Sbjct: 369 LADIEKLIKRPLE 381


>gi|156976669|ref|YP_001447575.1| ATP-dependent RNA helicase [Vibrio harveyi ATCC BAA-1116]
 gi|156528263|gb|ABU73348.1| hypothetical protein VIBHAR_05443 [Vibrio harveyi ATCC BAA-1116]
          Length = 430

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 157/408 (38%), Positives = 238/408 (58%), Gaps = 15/408 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P+VV A+ + GY K TPIQ K IP+  + HD+   AQTGTGKTA+F LPM+
Sbjct: 1   MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMI 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +             I+ PTRELA Q+ADN + Y K  +L+VA + GG    +Q   
Sbjct: 61  QQLLESGRSASRKTARALIMAPTRELAEQIADNIKAYTKYTDLSVAAIFGGRKMSSQVTA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H  +G + + +IE LV DEADR+LDMGFI  ++ I   V    
Sbjct: 121 LEGGVDILVATPGRLEEHIEQGNVSVASIEFLVFDEADRILDMGFIHAVRKIMMDVDTDP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L  ++++ L+ PKRIEV   ++TA+TI H       +   +       
Sbjct: 181 QIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAQTIAHVLYPVDQERKTELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   K  ++F N K+   ++   L+  G      HG+  Q +R + L  FK G  ++
Sbjct: 239 -IGRKNWKQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V +E+   + 
Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVV 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPP-----LEKIDIA---QHNHARKNNP 398
            +E LI++++  +  +L+   P      +EK++     ++   R+NNP
Sbjct: 358 QVENLIQQRIRRI--ELAGYEPKQRESYIEKLNSKPAFKNRQGRRNNP 403


>gi|161524137|ref|YP_001579149.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|160341566|gb|ABX14652.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
           ATCC 17616]
          Length = 509

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 161/373 (43%), Positives = 221/373 (59%), Gaps = 8/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+  ++ A+ + GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 34  TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q 
Sbjct: 94  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 153

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 154 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 213

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +            +   +  
Sbjct: 214 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQL 273

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                   +K  I+FCN K     L   LE+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 274 L---RDRGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEI 330

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 331 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 390

Query: 357 IDAIEKLIEKKVD 369
           +  IEKLI++ ++
Sbjct: 391 LADIEKLIKRPLE 403


>gi|294056345|ref|YP_003550003.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615678|gb|ADE55833.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 465

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 152/463 (32%), Positives = 239/463 (51%), Gaps = 25/463 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L L+  +  A+ D GY  P+PIQ + IP++L+  D+   AQTGTGKTA+F LP+L
Sbjct: 4   LTFQELPLAEPIQRALSDKGYTTPSPIQARAIPVLLEGGDLLACAQTGTGKTAAFALPLL 63

Query: 61  TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             + +   +      R L+L PTRELA QVA+NFE YGK+      ++ GG+  + Q K 
Sbjct: 64  HGIAERPRKPFRRGVRHLVLTPTRELAVQVAENFELYGKHIKFRSMMVYGGVSEKPQIKT 123

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+  PGR++D  ++G + ++ +E  ++DEADRMLDMGFI  I+ I + +P  R
Sbjct: 124 LFQGVDVLVACPGRLIDLMDQGHVDLSQVETFILDEADRMLDMGFIRDIRKIAAKLPKKR 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTP-SSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTLLFSATM  E+ K+    L  P  I +    ++  +  +           K    +  
Sbjct: 184 QTLLFSATMAPEITKLGHAMLHQPAEIRIAPQGTTADKVDQSLCFIGKKAKPKLLLEMLH 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               +   +  ++F   K    NL   L  +G    AIHGN  Q +R K L  ++ G I 
Sbjct: 244 RRFDEQPNELSLVFTRTKHGAKNLAKKLNGEGLKADAIHGNKSQSAREKTLERYRRGEID 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++  V NFD+P  A+ Y+HRIGRT RAG  G A +  ++E++  +
Sbjct: 304 ILVATDVAARGIDVKNITLVINFDLPMEADAYVHRIGRTARAGASGHAVSFCSEEEVALL 363

Query: 358 DAIEKLIEKKVDWLNG----DLSSLNPPLEKIDIAQHNHA-----------------RKN 396
             IE+LI+K V         D  ++   L +  + +                     RK+
Sbjct: 364 RQIERLIKKTVPVDESHPFHDADAMELHLSRRPVKKPAQGGGNRGGGGRSGAKRGGPRKS 423

Query: 397 NPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQEND 439
           +P   K  G  +        KS   ++   + +K   +   + 
Sbjct: 424 SPGKFKQGGRSKPSAGRERAKSS-EMRPKARPAKRNSNRSRSR 465


>gi|164657065|ref|XP_001729659.1| hypothetical protein MGL_3203 [Malassezia globosa CBS 7966]
 gi|159103552|gb|EDP42445.1| hypothetical protein MGL_3203 [Malassezia globosa CBS 7966]
          Length = 560

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 129/379 (34%), Positives = 202/379 (53%), Gaps = 2/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
            F + G    ++  +   G+ +P+ IQ +  PL L   D+  IA+TG+GKT  F LP  +
Sbjct: 136 TFEETGYPDYIMREINKLGFTEPSAIQSQAWPLALSGRDLVAIAETGSGKTIGFALPSIL 195

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P  LIL PTRELA Q+ +  +++G    +    + GG+P   Q + L
Sbjct: 196 HIKAQAPLQYGDGPIALILAPTRELAVQIQNECQRFGSACRVRTTSVYGGVPKGQQIRSL 255

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA+++I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 256 QRGAEIVIATPGRLIDMMEIGKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVEQIRPDRQ 315

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT   E+Q+++ +FL +  ++ + +    A       +    ++ K+  L++ L 
Sbjct: 316 TLMFSATWPKEVQRMASDFLNDYVQVNIGSMELAANHNVKQVIEVCTEFDKRGRLIKHLE 375

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIF   K+   +L   L + G+   AIHG+  Q  R  +L  FK G   +M
Sbjct: 376 HISQENGKVIIFTGTKRAADDLTKFLRQDGWPGLAIHGDKQQDERDWVLREFKSGNSPIM 435

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +A+RGLD+ D+ +V N D P   E+YIH+IGRTGRAGR G A T    E+ K    
Sbjct: 436 VATAVASRGLDVKDISYVINSDFPTNTEDYIHQIGRTGRAGRKGVAITFFTSENSKSARD 495

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +  ++ +    +  +L  +
Sbjct: 496 LVGILREANQEVPPELQDM 514


>gi|326798202|ref|YP_004316021.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21]
 gi|326548966|gb|ADZ77351.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21]
          Length = 419

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 154/417 (36%), Positives = 229/417 (54%), Gaps = 3/417 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY  PTPIQ + IP+VL   D+ G AQTGTGK+A+F+LP+L
Sbjct: 1   MSFKELKLIDPLLKAIHKEGYETPTPIQSQAIPVVLSGRDLLGCAQTGTGKSAAFILPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     + +  + L+L PTRELA Q+ ++   YG+   L   ++ GG+    Q   L+
Sbjct: 61  QQLNSLPNKEKAVKALVLAPTRELAIQINESIATYGQLLPLKHQVVYGGVNINTQISGLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+LD   +  L +  +   V+DEADRMLDMGFI  I+ + +L+P  RQT
Sbjct: 121 KGIDILVATPGRLLDLVGQRVLTLRAVSHFVLDEADRMLDMGFIHDIKKVVALLPIKRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+ K++   L+NP R+EV   SSTAE +     A       K  L     +
Sbjct: 181 LFFSATMPPEITKLANTLLKNPVRVEVTPVSSTAEKVTQVVYAVDKANKPKLLLHLLKSE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D +   ++F   K     L   L KQG    AIHGN  Q +R   L  FK G +++++
Sbjct: 241 VRDHV---LVFTRTKHGADRLVKFLAKQGVQAAAIHGNKSQNARQNALQAFKSGQLKVLI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++  V NFD+PN  E Y+HRIGRTGRAG  GKA +    E+  ++ +I
Sbjct: 298 ATDIAARGIDVEELKFVINFDLPNEPETYVHRIGRTGRAGASGKALSFCDLEERPYLQSI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             L  + +  +N            + + +     K+           RR +  ++QK
Sbjct: 358 NNLTNQAIPVINEHPFPATDKFVAVPLPKRPLQNKSEKASTNKNRKKRRFRPANAQK 414


>gi|315123425|ref|YP_004065431.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315017185|gb|ADT70522.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 433

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 153/433 (35%), Positives = 234/433 (54%), Gaps = 7/433 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F     +P+++ A+ +  Y   TPIQ   IP V +  DV   AQTGTGKTA+F LP++
Sbjct: 1   MNFKSFSFAPELIQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPII 60

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +  +     P  L+L PTRELA Q+A+NF+ + K  +L V  L GG+    Q   L
Sbjct: 61  QKLFESDSSTTNAPSALVLAPTRELAEQIANNFKDFAKYTSLKVVSLFGGVNTAGQEIAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D+++ TPGR+LDH   G L +  ++ LV+DEADRMLDMGFI  +Q++       RQ
Sbjct: 121 KEGVDIVVATPGRLLDHIRLGNLSLAQVKHLVLDEADRMLDMGFINDMQSVIKSCADERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT    +++ +   L+ P+ + V+    T  T        Y    ++   L   L
Sbjct: 181 ILLFSATFPAAIKQFASKVLKQPEIVRVD---QTNSTASTVQHVVYPVEERRKQELLSEL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F N K+    L   L   G      HG+  Q +R + L  FKEG ++++
Sbjct: 238 IGKKNWQQVLVFVNMKETADELVTELNLDGIPAAVCHGDKSQGNRRRALREFKEGKVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+++AARG+DI  +  V N D+P  AE+Y+HRIGRTGRAG  G+A + V++E+   +  
Sbjct: 298 VATEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGNQGQAISFVSREEENMLFE 357

Query: 360 IEKLIEKKVD--WLNG-DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           IE LI +K+   +L G ++S+    ++KI     +  R     P      + R KN S  
Sbjct: 358 IETLIGQKIKRVYLEGYEVSNREVLIDKIGKKPAHLRRTRANKPSGQATGEARAKNRSRI 417

Query: 417 KSHIPLKESEKIS 429
            +     + EK+S
Sbjct: 418 SNVRKSLKGEKLS 430


>gi|329891295|ref|ZP_08269638.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
 gi|328846596|gb|EGF96160.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
          Length = 589

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 153/374 (40%), Positives = 226/374 (60%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  +GL+  ++ A+   GY KPTPIQ K IP V++  D+ GIAQTGTGKTA+F LP+L
Sbjct: 4   ITFESMGLNKALLTALAATGYEKPTPIQAKAIPDVMKGKDLLGIAQTGTGKTAAFALPIL 63

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L + R   R R  R LIL PTRELA Q+ D+F++YG +    VA++ GG+ + AQ + 
Sbjct: 64  HRLAENRVAPRPRTTRALILSPTRELATQIGDSFKQYGAHLGFRVAVIFGGVKYGAQERA 123

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G DVL+  PGR+LDH  +  L ++  EI V+DEAD+MLD+GFI  I+ I S +P  R
Sbjct: 124 LQQGLDVLVAAPGRLLDHIQQKTLDLSTCEIFVLDEADQMLDLGFIKPIRQIVSRIPAKR 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L FSATM  E+ K++   L++P +++V   ++T E I+   +       +        
Sbjct: 184 QNLFFSATMPSEIGKLAGELLKDPVKVQVTPQATTVERIKQSVIWVEQGKKRALLTEL-- 241

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S       ++F   K     +   LE  G    AIHGN  Q  R + L  FK G +++
Sbjct: 242 -FSDPAYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERALEAFKNGKLRV 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  V HV NF++P   E Y+HRIGRT RAG+ G A + VA +++K + 
Sbjct: 301 LVATDIAARGIDVDKVTHVVNFELPYVPEAYVHRIGRTARAGKDGTAISFVAGDEMKLLK 360

Query: 359 AIEKLIEKKVDWLN 372
            IEK+  +K+  ++
Sbjct: 361 DIEKVTRQKIPAID 374


>gi|45440809|ref|NP_992348.1| ATP-dependent RNA helicase RhlE [Yersinia pestis biovar Microtus
           str. 91001]
 gi|45435667|gb|AAS61225.1| Superfamily II DNA and RNA helicases [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 470

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 164/449 (36%), Positives = 249/449 (55%), Gaps = 8/449 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY+ PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 20  MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 79

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L + +  +   R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    Q  
Sbjct: 80  QLLSQDQQPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM 139

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 140 KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 199

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I            ++      
Sbjct: 200 RQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKREL---LS 256

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G I+
Sbjct: 257 QMIGEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIR 316

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ K +
Sbjct: 317 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLL 376

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE+L+++++  +  D    +P ++   I      R              R +N     
Sbjct: 377 RDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGRGAQRPGMGRGSSAGRPQNGGGAA 436

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFR 446
                + S    + Q D Q   A      
Sbjct: 437 GRGDSRNSR--PRSQADGQRRPAGPSSRG 463


>gi|51595558|ref|YP_069749.1| ATP-dependent RNA helicase RhlE [Yersinia pseudotuberculosis IP
           32953]
 gi|108807091|ref|YP_651007.1| ATP-dependent RNA helicase RhlE [Yersinia pestis Antiqua]
 gi|108812974|ref|YP_648741.1| ATP-dependent RNA helicase RhlE [Yersinia pestis Nepal516]
 gi|153950333|ref|YP_001401773.1| ATP-dependent RNA helicase RhlE [Yersinia pseudotuberculosis IP
           31758]
 gi|166211637|ref|ZP_02237672.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167400295|ref|ZP_02305808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167423922|ref|ZP_02315675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|170025120|ref|YP_001721625.1| ATP-dependent RNA helicase RhlE [Yersinia pseudotuberculosis YPIII]
 gi|186894614|ref|YP_001871726.1| ATP-dependent RNA helicase RhlE [Yersinia pseudotuberculosis PB1/+]
 gi|229894068|ref|ZP_04509254.1| putative ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|229903411|ref|ZP_04518524.1| putative ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|294503186|ref|YP_003567248.1| DEAD/DEAH box helicase [Yersinia pestis Z176003]
 gi|51588840|emb|CAH20454.1| putative ATP-dependent RNA helicase rhlE [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776622|gb|ABG19141.1| DEAD/DEAH box helicase [Yersinia pestis Nepal516]
 gi|108779004|gb|ABG13062.1| DEAD/DEAH box helicase [Yersinia pestis Antiqua]
 gi|152961828|gb|ABS49289.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia
           pseudotuberculosis IP 31758]
 gi|166207408|gb|EDR51888.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167050244|gb|EDR61652.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167056771|gb|EDR66534.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169751654|gb|ACA69172.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186697640|gb|ACC88269.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679181|gb|EEO75284.1| putative ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|229703953|gb|EEO90966.1| putative ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|262361223|gb|ACY57944.1| DEAD/DEAH box helicase [Yersinia pestis D106004]
 gi|294353645|gb|ADE63986.1| DEAD/DEAH box helicase [Yersinia pestis Z176003]
          Length = 451

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 164/449 (36%), Positives = 249/449 (55%), Gaps = 8/449 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY+ PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L + +  +   R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    Q  
Sbjct: 61  QLLSQDQQPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I            ++      
Sbjct: 181 RQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKREL---LS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G I+
Sbjct: 238 QMIGEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE+L+++++  +  D    +P ++   I      R              R +N     
Sbjct: 358 RDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGRGAQRPGMGRGSSAGRPQNGGGAA 417

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFR 446
                + S    + Q D Q   A      
Sbjct: 418 GRGDSRNSR--PRSQADGQRRPAGPSSRG 444


>gi|326315975|ref|YP_004233647.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372811|gb|ADX45080.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 491

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 168/427 (39%), Positives = 237/427 (55%), Gaps = 15/427 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L+  +  AV + GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L 
Sbjct: 4   SFSNLSLAEPLARAVAEMGYTSMTPIQAEAIPVVLTGQDVMGAAQTGTGKTAAFSLPLLQ 63

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L K       P        +L PTRELA QVA     Y K   L   ++ GG+  + Q 
Sbjct: 64  RLLKHENSSTSPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQT 123

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P 
Sbjct: 124 LELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPK 183

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           TR TLLFSAT + E+++++ ++LQNP  IEV       ET        Y+          
Sbjct: 184 TRTTLLFSATFSPEIKRLAGSYLQNPVTIEVAR---PNETASTVEQRFYSVNDDDKRRAI 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             +     +K   +F N K     L  +LE++G    A+HG+  Q  R+K L  FK G +
Sbjct: 241 HHVLRTRGVKQAFVFVNSKLGCARLSRTLEREGLKAAALHGDKSQDERLKALDAFKRGEV 300

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+V +D+AARGLDI DV  VFNFDVP  AE+Y+HRIGRTGRAG  G A TLV+  D + 
Sbjct: 301 DLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSSSDARL 360

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR--KNNPIPQKSTGFDRRKKNYS 414
           +  IEKL +KK+     DL +L    ++     ++  R  +++     + G    +    
Sbjct: 361 VADIEKLTKKKI-----DLEALEVEEDRPRGRFNDGRRAWRDDESGGDARGRRESRGEGP 415

Query: 415 SQKSHIP 421
            + S  P
Sbjct: 416 GRDSRPP 422


>gi|254672936|emb|CBA07321.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis alpha275]
          Length = 489

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 165/482 (34%), Positives = 263/482 (54%), Gaps = 43/482 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +      +
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNL---LE 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 242 RLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           ++I++L   K+             +E+I+  +     +    P+K    + R++N     
Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRY--- 406

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFR-GNMP-------------AFMLPKNRGKLND 463
                 ES K  + +    EN A+  G   G +              A + P+ R K+  
Sbjct: 407 ------ESAKAQREKNTRPENAANDAGAACGKIAGRSRRSRREHRTCALLQPRYRRKITL 460

Query: 464 KL 465
           K+
Sbjct: 461 KI 462


>gi|323495931|ref|ZP_08100998.1| ATP-dependent RNA helicase RhlB [Vibrio sinaloensis DSM 21326]
 gi|323319014|gb|EGA71958.1| ATP-dependent RNA helicase RhlB [Vibrio sinaloensis DSM 21326]
          Length = 433

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 139/406 (34%), Positives = 210/406 (51%), Gaps = 10/406 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL P+V+  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADLGLHPQVIEGLDKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 E    +   PR +I+ PTRELA Q+ ++ E    +  +  AL  GG P+E Q  
Sbjct: 70  HLLNTPEHEGRKPTQPRAIIMAPTRELAIQIFNDAEPLIASTGIKAALAYGGEPYEKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KLE G DVLI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLEEGVDVLIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           ++ L    + T   +     F       E        +T        +   ++    L Q
Sbjct: 190 KERLNMLFSATLSYRVQELAFEHMHN-PEHVVVEPEVKTGHRIQEELFYPSNEHKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R +IL  F +G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKRERILEQFTKGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   ++   ++
Sbjct: 309 LLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAINL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
             IE+ IE  +   + D S+L       D+      R N P  +++
Sbjct: 369 PPIEEYIEHAIPVSDYDPSALIE-----DLPAPIRMRSNRPQQRRT 409


>gi|153834694|ref|ZP_01987361.1| ATP-dependent RNA helicase RhlB [Vibrio harveyi HY01]
 gi|148868890|gb|EDL67950.1| ATP-dependent RNA helicase RhlB [Vibrio harveyi HY01]
          Length = 437

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 139/430 (32%), Positives = 211/430 (49%), Gaps = 11/430 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL P+V   +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADLGLKPQVTEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 E    +   PR +I+ PTRELA Q+ ++ E    +  L  AL  GG  ++ Q  
Sbjct: 70  HLLTTPEHEGRKPTQPRAIIMAPTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G D+LI T GRI+D + +    +NNI+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           ++ L    + T   +     F       E        +T        +   ++    L Q
Sbjct: 190 KERLNMLFSATLSYRVQELAFEHMHN-PEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     I+F N K    ++   L   G  V  + G++ Q+ R KIL  F  G + 
Sbjct: 249 TLIEEEWPDRAIVFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGEVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   ++   ++
Sbjct: 309 LLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAINL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
             IE+ IE  +   + D    +  L  PL     A     R+ N    +S     + +  
Sbjct: 369 PPIEEYIEHAIPVSDYDASALIQDLPAPLRM--RAPRTQQRRTNTGGTRSGNRKPQGRRP 426

Query: 414 SSQKSHIPLK 423
              +   P +
Sbjct: 427 RQPRQSAPKQ 436


>gi|116203955|ref|XP_001227788.1| hypothetical protein CHGG_09861 [Chaetomium globosum CBS 148.51]
 gi|118582180|sp|Q2GQ93|DHH1_CHAGB RecName: Full=ATP-dependent RNA helicase DHH1
 gi|88175989|gb|EAQ83457.1| hypothetical protein CHGG_09861 [Chaetomium globosum CBS 148.51]
          Length = 512

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 117/372 (31%), Positives = 186/372 (50%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF D GL   ++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 11  LDFEDFGLKRDLLMGIFEAGFEKPSPIQEESIPVALVGRDILARAKNGTGKTAAFVIPAL 70

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +V   + LIL PTRELA Q +   +  GK+  + V +  GG        +L+
Sbjct: 71  EKI---NPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIVRLQ 127

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +    ++   + ++DEAD++L + F P I+ +    P  RQ 
Sbjct: 128 DPVHIVVGTPGRILDLAGKQVADLSECPMFIMDEADKLLSIEFTPVIEQLLRFHPKDRQV 187

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F                 T+            K+       L 
Sbjct: 188 MLFSATFPISVKD----FSDKNMTSPYEINLMDELTLRGITQYYAYVEEKQKVHCLNTLF 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q++R ++  +F+ G  + +V
Sbjct: 244 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMAQQARNRVFHDFRNGVCRNLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 304 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNI 363

Query: 361 EKLIEKKVDWLN 372
           E+ +  ++  + 
Sbjct: 364 ERDLGTEIQPIP 375


>gi|254228105|ref|ZP_04921535.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262395917|ref|YP_003287770.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25]
 gi|151939601|gb|EDN58429.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262339511|gb|ACY53305.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25]
          Length = 522

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 185/472 (39%), Positives = 262/472 (55%), Gaps = 22/472 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ K IP +L+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G R R    R LIL PTRELAAQV +N   YG++  L+ A++ GG+    Q ++L
Sbjct: 61  ERLSNGSRVRANQVRALILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +N+  +  + +E+LV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ +++  + NP  I VN  +STA T+E           KK A +   L
Sbjct: 181 NLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADV---KKKAPMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  ++F   K     L   L +Q     AIHGN  Q +R K L++FK G I+++
Sbjct: 238 IKDGDWKQVLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV   +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFA 357

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKIDIA--------------QHNHARKNNPIPQKS 403
           IE+LI++ +    L G   +   P  K+D                  N A +N P  +K 
Sbjct: 358 IERLIQEVLPRKELEGFAPTNVVPESKLDTRPIKPKKPKKPKKPKAPNAAGENAPATEKK 417

Query: 404 TGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLP 455
            G    K        +   K S       +   +++++  G   + P    P
Sbjct: 418 AGNGANKPKRRFNGGNNGNKNSTNQGGAGKP--KSNSEGQGRTNSKPDDRKP 467


>gi|123443103|ref|YP_001007077.1| ATP-dependent RNA helicase RhlE [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090064|emb|CAL12927.1| putative ATP-dependent RNA helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 451

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 164/449 (36%), Positives = 250/449 (55%), Gaps = 8/449 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY+ PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L + +  +   R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    Q  
Sbjct: 61  QLLSQDQQPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I            ++      
Sbjct: 181 RQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKREL---LS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G I+
Sbjct: 238 QMIGEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE+L+++++  +  D    +P ++   I      R              R +N  +  
Sbjct: 358 RDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGRGAQRPGMGRGSSASRPQNGGAAA 417

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFR 446
                + S    + Q D Q   A      
Sbjct: 418 GRGDSRTSR--PRSQADGQRRPAGPSSRG 444


>gi|88860375|ref|ZP_01135013.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           tunicata D2]
 gi|88817573|gb|EAR27390.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           tunicata D2]
          Length = 609

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 140/385 (36%), Positives = 224/385 (58%), Gaps = 10/385 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ L LSP+++ +V   GYV P+ IQ + IP +L   DV G+AQTGTGKTA+F LP+L
Sbjct: 5   VTFSSLNLSPEILKSVEKLGYVTPSEIQAQCIPFLLNGKDVLGLAQTGTGKTAAFALPLL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++     V+ P+ L+L PTRELA QVA+ FE+Y +       L +  G  +  Q   L
Sbjct: 65  NNIDAT---VKHPQVLVLAPTRELAIQVAEAFEQYAQFIKGINVLALYGGQSYNVQLSGL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  V++ TPGR++DH NRG +  ++++ LV+DEAD ML MGFI  ++ I +  P  +Q
Sbjct: 122 RNGPQVIVATPGRLIDHLNRGTIKFDHLKALVLDEADEMLRMGFIEDVETIMAKTPKQKQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM  ++QK+   +L++ + + ++  +ST E++E  +       +       Q  
Sbjct: 182 TCLFSATMPQQIQKICSTYLEDAEHVHISARNSTVESVEQVYWQANTHKNNAIIRFLQAE 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    I+F   + + V +   LE+ GFS   ++G+++Q++R + +   K G + ++
Sbjct: 242 TY----DGAIVFVRTRNDTVEIAELLEQAGFSAAPLNGDMNQQARERTVERLKNGLLDIV 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  +E Y+HRIGRTGRAGR GKA   V   +   +  
Sbjct: 298 IATDVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERHLLRN 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           I +  +  ++  N D+ S     EK
Sbjct: 358 IIQHTKSTIN--NVDMPSTALVEEK 380


>gi|323490311|ref|ZP_08095526.1| ATP-dependent RNA helicase [Planococcus donghaensis MPA1U2]
 gi|323395981|gb|EGA88812.1| ATP-dependent RNA helicase [Planococcus donghaensis MPA1U2]
          Length = 481

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 139/408 (34%), Positives = 231/408 (56%), Gaps = 12/408 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  +S ++V A+   GY +PT +Q K IP+ L + D+   +QTG+GKTA+F +P+  
Sbjct: 5   KFDEYQISEQIVKALDGLGYTEPTEVQEKVIPVALSKTDLTVKSQTGSGKTAAFGIPICE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    +   P+ LIL PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  LVDWEENK---PQALILTPTRELADQVKEDITNIGRFKRIKAAAVYGKQPFAYQQAELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+LDH  RG L +  IE LV+DEAD ML+MGF+  +++I + +P  R T+
Sbjct: 122 KCHVVVGTPGRVLDHIERGTLKLEQIEYLVLDEADEMLNMGFVEQVESIINKLPKQRTTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ + ++K+ + ++ +P+ IE+ +  +  + I+H   + +    +K   L + +  
Sbjct: 182 LFSATLPENVEKLQKKYMIDPQHIEIASTETLTDQIDH---SLFVVAEQKKFSLLRDVTI 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  K NV  +   LEK  ++   +HG + Q  R  +++ FK G  + +VA
Sbjct: 239 IENPDSCIIFCRTKDNVDFVMEQLEKHYYTCDKLHGGMLQEDRTAVMNEFKRGEFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI  + HV NFD+P   E+Y+HR GRTGRAG+ GKA + V   + K +  IE
Sbjct: 299 TDVAARGIDIDSITHVINFDLPMEKESYVHRSGRTGRAGKTGKAISFVTPNEDKFLAEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             I  ++           P + ++D A      K    P+     + +
Sbjct: 359 SYIGFEIPHRTA------PSVHEVDTAMLAFTEKLESRPKLKKNKNEQ 400


>gi|238763827|ref|ZP_04624785.1| ATP-dependent RNA helicase rhlE [Yersinia kristensenii ATCC 33638]
 gi|238697957|gb|EEP90716.1| ATP-dependent RNA helicase rhlE [Yersinia kristensenii ATCC 33638]
          Length = 452

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 163/449 (36%), Positives = 250/449 (55%), Gaps = 7/449 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY+ PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L + +  +   R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    Q  
Sbjct: 61  QLLSQDQQPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I            ++      
Sbjct: 181 RQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKREL---LS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G I+
Sbjct: 238 QMIGEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE+L+++++  +  D    +P ++   I      R              R +N     
Sbjct: 358 RDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGRGAQRPGMGRGSSAGRPQNGGGAT 417

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFR 446
           +      + +  + Q D Q   A      
Sbjct: 418 AGRGDSRTSR-PRSQADGQRRPAGPSSRG 445


>gi|229011722|ref|ZP_04168904.1| ATP-dependent RNA helicase [Bacillus mycoides DSM 2048]
 gi|229167295|ref|ZP_04295034.1| ATP-dependent RNA helicase [Bacillus cereus AH621]
 gi|228616171|gb|EEK73257.1| ATP-dependent RNA helicase [Bacillus cereus AH621]
 gi|228749519|gb|EEL99362.1| ATP-dependent RNA helicase [Bacillus mycoides DSM 2048]
          Length = 450

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 150/432 (34%), Positives = 240/432 (55%), Gaps = 16/432 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ +++ P+ I+V +   T +TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMEEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K  V  L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EK +   +     +     P ++ +D    N      P P+KS  + +R     S+    
Sbjct: 360 EKTLGAPIQRQIIE----QPMIKNVD---ENGKPVQKPAPKKSGQYRQRDSREGSRSGSK 412

Query: 421 --PLKESEKISK 430
             P  +S   S+
Sbjct: 413 GGPRNDSRNSSR 424


>gi|307153172|ref|YP_003888556.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp.
           PCC 7822]
 gi|306983400|gb|ADN15281.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7822]
          Length = 482

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 147/369 (39%), Positives = 220/369 (59%), Gaps = 5/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS   V  +   G+  PT IQ K IPL+L+ HDV G +QTGTGKTA++ LP+L
Sbjct: 3   ISFKNLGLSDARVQHLESIGFTNPTDIQQKAIPLLLEGHDVVGQSQTGTGKTAAYSLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++    V+    LIL PTRELA QVA   + +  +  L +  + GG   + Q + LE
Sbjct: 63  ERIDRHSRSVQA---LILTPTRELAQQVAQAIKDFVDDRRLFILTVYGGQSIDRQIRSLE 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++D   R KL ++ +++ V+DEAD ML MGFI  ++ I    P TRQT
Sbjct: 120 RGVQIVVGTPGRVIDLLERKKLSLDELQMAVLDEADEMLSMGFIDDVKKILQQTPSTRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM  E++++ + FL++P  +      +T E I+         +SK  A   Q + 
Sbjct: 180 ACFSATMPPEIKRLIDQFLKSPVVVSATQHEATPERIDQHIYMVPRGWSKLKA--LQPIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  ++ IIF   K+    L   L++ G  V   HGN+ Q  R +++  F+EG I+L+V
Sbjct: 238 EIEDPESAIIFVRTKQTATELTGKLQESGHHVDEYHGNLSQAQRERLVQRFREGKIKLVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+ HV NFD+P+  E YIHRIGRTGRAG+ G A +L+   D + +  I
Sbjct: 298 ATDIAARGLDVEDLSHVINFDLPDNTETYIHRIGRTGRAGKTGTAISLIEPIDRRMLRQI 357

Query: 361 EKLIEKKVD 369
           E  +  ++D
Sbjct: 358 EHRVGHRLD 366


>gi|332998804|gb|EGK18400.1| cold-shock DEAD box protein A [Shigella flexneri VA-6]
          Length = 629

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|331679243|ref|ZP_08379915.1| ATP-dependent RNA helicase DeaD [Escherichia coli H591]
 gi|331073308|gb|EGI44631.1| ATP-dependent RNA helicase DeaD [Escherichia coli H591]
          Length = 651

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 29  TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 88

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 89  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 145

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 146 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 205

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 206 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 262

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 263 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 322

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 323 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 382

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 383 ERTMKLTIPEVELPNAEL 400


>gi|331654768|ref|ZP_08355768.1| cold-shock DEAD box protein A (ATP-dependent RNA helicasedeaD)
           [Escherichia coli M718]
 gi|331048150|gb|EGI20227.1| cold-shock DEAD box protein A (ATP-dependent RNA helicasedeaD)
           [Escherichia coli M718]
          Length = 651

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 29  TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 88

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 89  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 145

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 146 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 205

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 206 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 262

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 263 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 322

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 323 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 382

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 383 ERTMKLTIPEVELPNAEL 400


>gi|320202076|gb|EFW76651.1| Cold-shock DEAD-box protein A [Escherichia coli EC4100B]
          Length = 629

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|320175526|gb|EFW50622.1| Cold-shock DEAD-box protein A [Shigella dysenteriae CDC 74-1112]
          Length = 626

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|315617245|gb|EFU97854.1| cold-shock DEAD box protein A [Escherichia coli 3431]
          Length = 632

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|312947721|gb|ADR28548.1| ATP-dependent RNA helicase DeaD [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 629

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|307313131|ref|ZP_07592757.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|306907042|gb|EFN37550.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|315062470|gb|ADT76797.1| ATP-dependent RNA helicase [Escherichia coli W]
 gi|323376942|gb|ADX49210.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11]
          Length = 629

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|300823875|ref|ZP_07103999.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 119-7]
 gi|309793740|ref|ZP_07688166.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 145-7]
 gi|300523643|gb|EFK44712.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 119-7]
 gi|308122697|gb|EFO59959.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 145-7]
          Length = 646

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 24  TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 84  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 140

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 141 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 200

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 201 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 258 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 318 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 377

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 378 ERTMKLTIPEVELPNAEL 395


>gi|300929852|ref|ZP_07145298.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 187-1]
 gi|300462214|gb|EFK25707.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 187-1]
          Length = 646

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 24  TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 84  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 140

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 141 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 200

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 201 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 258 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 318 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 377

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 378 ERTMKLTIPEVELPNAEL 395


>gi|300938072|ref|ZP_07152850.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 21-1]
 gi|300456932|gb|EFK20425.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 21-1]
          Length = 646

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 24  TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 84  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 140

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 141 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 200

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 201 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 258 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 318 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 377

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 378 ERTMKLTIPEVELPNAEL 395


>gi|301022016|ref|ZP_07185959.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 69-1]
 gi|300397731|gb|EFJ81269.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 69-1]
          Length = 646

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 24  TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 84  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 140

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 141 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 200

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 201 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 258 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 318 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 377

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 378 ERTMKLTIPEVELPNAEL 395


>gi|297521217|ref|ZP_06939603.1| ATP-dependent RNA helicase DeaD [Escherichia coli OP50]
          Length = 569

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|293406774|ref|ZP_06650700.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1412]
 gi|298382514|ref|ZP_06992111.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1302]
 gi|300897926|ref|ZP_07116305.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 198-1]
 gi|291426780|gb|EFE99812.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1412]
 gi|298277654|gb|EFI19170.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1302]
 gi|300358356|gb|EFJ74226.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 198-1]
          Length = 650

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 24  TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 84  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 140

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 141 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 200

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 201 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 258 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 318 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 377

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 378 ERTMKLTIPEVELPNAEL 395


>gi|222034881|emb|CAP77624.1| Cold-shock DEad box protein A [Escherichia coli LF82]
          Length = 645

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 23  TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 83  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 139

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 140 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 199

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 200 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 256

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 257 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 316

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 317 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 376

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 377 ERTMKLTIPEVELPNAEL 394


>gi|218706784|ref|YP_002414303.1| ATP-dependent RNA helicase DeaD [Escherichia coli UMN026]
 gi|218433881|emb|CAR14798.1| ATP-dependent RNA helicase [Escherichia coli UMN026]
 gi|284923186|emb|CBG36280.1| ATP-dependent RNA helicase (DEAD-box protein) [Escherichia coli
           042]
          Length = 655

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 29  TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 88

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 89  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 145

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 146 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 205

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 206 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 262

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 263 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 322

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 323 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 382

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 383 ERTMKLTIPEVELPNAEL 400


>gi|218701933|ref|YP_002409562.1| ATP-dependent RNA helicase DeaD [Escherichia coli IAI39]
 gi|218371919|emb|CAR19775.1| ATP-dependent RNA helicase [Escherichia coli IAI39]
          Length = 629

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|209880596|ref|XP_002141737.1| eukaryotic translation initiation factor 4A [Cryptosporidium muris
           RN66]
 gi|209557343|gb|EEA07388.1| eukaryotic translation initiation factor 4A, putative
           [Cryptosporidium muris RN66]
          Length = 404

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 126/376 (33%), Positives = 205/376 (54%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L   ++  +   G+ KP+ IQ + +  +L  +D  G AQ+GTGKTA+FV+  L  
Sbjct: 33  FEALNLDGNLLRGIFAYGFEKPSAIQQRGVKPILDGYDTIGQAQSGTGKTATFVIAALQK 92

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     +   + L+L PTRELA Q+       G   +L     +GG        KL+ G
Sbjct: 93  IDYS---LNACQVLLLAPTRELAQQIQKVALALGDYCDLRCHACVGGTSVRDDMNKLKNG 149

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ D  ++G L ++++++ ++DEAD ML  GF   I +I   +P   Q  L
Sbjct: 150 VHMVVGTPGRVFDMLDKGYLRVDHLKLFILDEADEMLSRGFKLQIHDIFKKLPQDVQVAL 209

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E+  ++  F+++PKRI V     T E I   +VA      K   L+       
Sbjct: 210 FSATMPNEILHLTTQFMRDPKRILVKQEELTLEGIRQYYVAVEKDEWKLATLVDL--YET 267

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   II+CN +  V  L   +  + F+   +HG++DQ+ R  I+  F+ G+ ++++ +
Sbjct: 268 LTIVQAIIYCNTRIRVDRLTKQMTDRDFTCSCMHGDMDQKDREVIMRQFRSGSSRVLITT 327

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P  AE YIHRIGR+GR GR G A   V  +DI+H+  IE+
Sbjct: 328 DLLARGIDVQQVSLVINYDLPVSAETYIHRIGRSGRFGRKGVAVNFVTVDDIEHLRDIER 387

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +   ++ L
Sbjct: 388 HYNTQIEEMPMYIADL 403


>gi|194433764|ref|ZP_03066039.1| cold-shock DEAD box protein A [Shigella dysenteriae 1012]
 gi|194418027|gb|EDX34121.1| cold-shock DEAD box protein A [Shigella dysenteriae 1012]
 gi|332086479|gb|EGI91626.1| cold-shock DEAD box protein A [Shigella dysenteriae 155-74]
          Length = 603

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|170766108|ref|ZP_02900919.1| cold-shock DEAD box protein A [Escherichia albertii TW07627]
 gi|170125254|gb|EDS94185.1| cold-shock DEAD box protein A [Escherichia albertii TW07627]
          Length = 627

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|162138368|ref|YP_542567.2| ATP-dependent RNA helicase DeaD [Escherichia coli UTI89]
          Length = 629

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|91074155|gb|ABE09036.1| Cold-shock DEAD-box protein A [Escherichia coli UTI89]
          Length = 651

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 29  TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 88

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 89  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 145

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 146 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 205

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 206 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 262

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 263 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 322

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 323 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 382

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 383 ERTMKLTIPEVELPNAEL 400


>gi|145727|gb|AAA23674.1| deaD [Escherichia coli]
          Length = 571

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 24  TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 84  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 140

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 141 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 200

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 201 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 258 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 318 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 377

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 378 ERTMKLTIPEVELPNAEL 395


>gi|117625458|ref|YP_858781.1| ATP-dependent RNA helicase DeaD [Escherichia coli APEC O1]
 gi|209920639|ref|YP_002294723.1| ATP-dependent RNA helicase DeaD [Escherichia coli SE11]
 gi|227887886|ref|ZP_04005691.1| ATP-dependent RNA helicase DeaD [Escherichia coli 83972]
 gi|300817586|ref|ZP_07097802.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 107-1]
 gi|300904348|ref|ZP_07122201.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 84-1]
 gi|300918917|ref|ZP_07135476.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 115-1]
 gi|300926099|ref|ZP_07141917.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 182-1]
 gi|300948811|ref|ZP_07162879.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 116-1]
 gi|300955748|ref|ZP_07168093.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 175-1]
 gi|300977829|ref|ZP_07174069.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 200-1]
 gi|300990761|ref|ZP_07179333.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 45-1]
 gi|301301782|ref|ZP_07207916.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 124-1]
 gi|301326415|ref|ZP_07219769.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 78-1]
 gi|301644873|ref|ZP_07244845.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 146-1]
 gi|606102|gb|AAA57965.1| two frameshifts relative to ECODEAD [Escherichia coli str. K-12
           substr. MG1655]
 gi|30042761|gb|AAP18484.1| inducible ATP-independent RNA helicase [Shigella flexneri 2a str.
           2457T]
 gi|56383827|gb|AAN44670.2| inducible ATP-independent RNA helicase [Shigella flexneri 2a str.
           301]
 gi|73857176|gb|AAZ89883.1| inducible ATP-independent RNA helicase [Shigella sonnei Ss046]
 gi|81247009|gb|ABB67717.1| inducible ATP-independent RNA helicase [Shigella boydii Sb227]
 gi|115514582|gb|ABJ02657.1| inducible ATP-independent RNA helicase [Escherichia coli APEC O1]
 gi|209913898|dbj|BAG78972.1| RNA helicase [Escherichia coli SE11]
 gi|227835282|gb|EEJ45748.1| ATP-dependent RNA helicase DeaD [Escherichia coli 83972]
 gi|281180206|dbj|BAI56536.1| RNA helicase [Escherichia coli SE15]
 gi|300308206|gb|EFJ62726.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 200-1]
 gi|300317381|gb|EFJ67165.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 175-1]
 gi|300403699|gb|EFJ87237.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 84-1]
 gi|300407069|gb|EFJ90607.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 45-1]
 gi|300413943|gb|EFJ97253.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 115-1]
 gi|300417864|gb|EFK01175.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 182-1]
 gi|300451700|gb|EFK15320.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 116-1]
 gi|300529884|gb|EFK50946.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 107-1]
 gi|300842763|gb|EFK70523.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 124-1]
 gi|300846904|gb|EFK74664.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 78-1]
 gi|301076818|gb|EFK91624.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 146-1]
 gi|315257088|gb|EFU37056.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 85-1]
 gi|315288936|gb|EFU48334.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 110-3]
 gi|315294907|gb|EFU54246.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 153-1]
 gi|315297886|gb|EFU57156.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 16-3]
 gi|324008761|gb|EGB77980.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 57-2]
 gi|324012112|gb|EGB81331.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 60-1]
 gi|324018314|gb|EGB87533.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 117-3]
          Length = 646

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 24  TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 84  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 140

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 141 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 200

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 201 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 258 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 318 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 377

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 378 ERTMKLTIPEVELPNAEL 395


>gi|110807031|ref|YP_690551.1| ATP-dependent RNA helicase DeaD [Shigella flexneri 5 str. 8401]
 gi|157154820|ref|YP_001464636.1| ATP-dependent RNA helicase DeaD [Escherichia coli E24377A]
 gi|157162647|ref|YP_001459965.1| ATP-dependent RNA helicase DeaD [Escherichia coli HS]
 gi|187731310|ref|YP_001881921.1| ATP-dependent RNA helicase DeaD [Shigella boydii CDC 3083-94]
 gi|188491860|ref|ZP_02999130.1| cold-shock DEAD box protein A [Escherichia coli 53638]
 gi|237706085|ref|ZP_04536566.1| cold-shock DEAD-box protein A [Escherichia sp. 3_2_53FAA]
 gi|254038328|ref|ZP_04872386.1| cold-shock DEAD-box protein A [Escherichia sp. 1_1_43]
 gi|293412537|ref|ZP_06655260.1| conserved hypothetical protein [Escherichia coli B354]
 gi|331643862|ref|ZP_08344993.1| cold-shock DEAD-box protein A [Escherichia coli H736]
 gi|331648963|ref|ZP_08350051.1| cold-shock DEAD-box protein A [Escherichia coli M605]
 gi|331674700|ref|ZP_08375459.1| cold-shock DEAD-box protein A [Escherichia coli TA280]
 gi|332280007|ref|ZP_08392420.1| cold-shock DEAD-box protein A [Shigella sp. D9]
 gi|26110171|gb|AAN82357.1|AE016767_117 Cold-shock DEAD-box protein A [Escherichia coli CFT073]
 gi|110616579|gb|ABF05246.1| inducible ATP-independent RNA helicase [Shigella flexneri 5 str.
           8401]
 gi|157068327|gb|ABV07582.1| cold-shock DEAD box protein A [Escherichia coli HS]
 gi|157076850|gb|ABV16558.1| cold-shock DEAD box protein A [Escherichia coli E24377A]
 gi|187428302|gb|ACD07576.1| cold-shock DEAD box protein A [Shigella boydii CDC 3083-94]
 gi|188487059|gb|EDU62162.1| cold-shock DEAD box protein A [Escherichia coli 53638]
 gi|226839952|gb|EEH71973.1| cold-shock DEAD-box protein A [Escherichia sp. 1_1_43]
 gi|226899125|gb|EEH85384.1| cold-shock DEAD-box protein A [Escherichia sp. 3_2_53FAA]
 gi|281602546|gb|ADA75530.1| Cold-shock DEAD-box protein A [Shigella flexneri 2002017]
 gi|291469308|gb|EFF11799.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294492243|gb|ADE90999.1| cold-shock DEAD box protein A [Escherichia coli IHE3034]
 gi|331037333|gb|EGI09557.1| cold-shock DEAD-box protein A [Escherichia coli H736]
 gi|331042710|gb|EGI14852.1| cold-shock DEAD-box protein A [Escherichia coli M605]
 gi|331068139|gb|EGI39535.1| cold-shock DEAD-box protein A [Escherichia coli TA280]
 gi|332102359|gb|EGJ05705.1| cold-shock DEAD-box protein A [Shigella sp. D9]
          Length = 651

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 29  TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 88

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 89  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 145

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 146 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 205

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 206 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 262

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 263 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 322

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 323 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 382

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 383 ERTMKLTIPEVELPNAEL 400


>gi|54026656|ref|YP_120898.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
 gi|54018164|dbj|BAD59534.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
          Length = 602

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 148/372 (39%), Positives = 215/372 (57%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+  +++ A+ D GY  P+PIQ  TIP +L   DV G+AQTGTGKTA+F +P+L 
Sbjct: 30  SFADLGIDDRILRAIADVGYESPSPIQAATIPPLLDGADVVGLAQTGTGKTAAFAIPILM 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            LE    +   PR L+L PTRELA QVA+ F +Y  +      L I  G  +  Q   L 
Sbjct: 90  GLEVTGRQ---PRALVLAPTRELAIQVAEAFGRYAAHMPGLHVLPIYGGQSYGVQLSGLR 146

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  +G L ++ ++ LV+DEAD ML MGF   ++ I +  P  +Q 
Sbjct: 147 RGAHVVVGTPGRVIDHLEKGTLDLSQLQYLVLDEADEMLKMGFQEDVERILADTPREKQV 206

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++K+S+ +L+ P  I V   + T   I   +V    Q           ++
Sbjct: 207 ALFSATMPAAIRKISKQYLREPVEITVKAKTQTNTNITQRWVQVSHQRKLDALTRVLEVE 266

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + M   IIF   K+    L   L  +GFS  AI+G+I Q  R + +   K G + ++V
Sbjct: 267 PFEAM---IIFVRTKQGTEELAEKLRARGFSAAAINGDIAQNQRERTIGQLKSGALDILV 323

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G+A   VA  +   + AI
Sbjct: 324 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGQALLFVAPRERHLLKAI 383

Query: 361 EKLIEKKVDWLN 372
           E+     ++ + 
Sbjct: 384 ERATRHPLEEMQ 395


>gi|38704144|ref|NP_312070.2| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           Sakai]
 gi|161367519|ref|NP_289738.2| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 EDL933]
 gi|168749243|ref|ZP_02774265.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4113]
 gi|168754142|ref|ZP_02779149.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4401]
 gi|168762127|ref|ZP_02787134.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4501]
 gi|168769579|ref|ZP_02794586.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773172|ref|ZP_02798179.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781305|ref|ZP_02806312.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786046|ref|ZP_02811053.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC869]
 gi|168797762|ref|ZP_02822769.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC508]
 gi|195938382|ref|ZP_03083764.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806131|ref|ZP_03248468.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812019|ref|ZP_03253348.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818284|ref|ZP_03258604.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400297|ref|YP_002272633.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327948|ref|ZP_03444031.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           TW14588]
 gi|254795113|ref|YP_003079950.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           TW14359]
 gi|261228174|ref|ZP_05942455.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255030|ref|ZP_05947563.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291284538|ref|YP_003501356.1| Cold-shock DEAD-box protein A [Escherichia coli O55:H7 str. CB9615]
 gi|331684811|ref|ZP_08385403.1| ATP-dependent RNA helicase DeaD [Escherichia coli H299]
 gi|32171494|sp|Q8XA87|DEAD_ECO57 RecName: Full=Cold-shock DEAD box protein A; AltName:
           Full=ATP-dependent RNA helicase deaD
 gi|187770756|gb|EDU34600.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4196]
 gi|188016396|gb|EDU54518.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4113]
 gi|189001016|gb|EDU70002.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358785|gb|EDU77204.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361392|gb|EDU79811.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4486]
 gi|189367581|gb|EDU85997.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4501]
 gi|189374042|gb|EDU92458.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC869]
 gi|189379846|gb|EDU98262.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC508]
 gi|208725932|gb|EDZ75533.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733296|gb|EDZ81983.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738407|gb|EDZ86089.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161697|gb|ACI39130.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4115]
 gi|217320315|gb|EEC28740.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           TW14588]
 gi|254594513|gb|ACT73874.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. TW14359]
 gi|290764411|gb|ADD58372.1| Cold-shock DEAD-box protein A [Escherichia coli O55:H7 str. CB9615]
 gi|320189516|gb|EFW64175.1| Cold-shock DEAD-box protein A [Escherichia coli O157:H7 str.
           EC1212]
 gi|320640234|gb|EFX09806.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           G5101]
 gi|320645531|gb|EFX14540.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H- str.
           493-89]
 gi|320650841|gb|EFX19298.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H- str. H
           2687]
 gi|320656222|gb|EFX24134.1| ATP-dependent RNA helicase DeaD [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661912|gb|EFX29320.1| ATP-dependent RNA helicase DeaD [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666747|gb|EFX33726.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326337864|gb|EGD61698.1| Cold-shock DEAD-box protein A [Escherichia coli O157:H7 str. 1125]
 gi|326347433|gb|EGD71158.1| Cold-shock DEAD-box protein A [Escherichia coli O157:H7 str. 1044]
 gi|331078426|gb|EGI49632.1| ATP-dependent RNA helicase DeaD [Escherichia coli H299]
          Length = 629

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|12517770|gb|AAG58298.1|AE005544_12 inducible ATP-independent RNA helicase [Escherichia coli O157:H7
           str. EDL933]
 gi|13363516|dbj|BAB37466.1| inducible ATP-independent RNA helicase [Escherichia coli O157:H7
           str. Sakai]
 gi|209758398|gb|ACI77511.1| inducible ATP-independent RNA helicase [Escherichia coli]
 gi|209758400|gb|ACI77512.1| inducible ATP-independent RNA helicase [Escherichia coli]
 gi|209758402|gb|ACI77513.1| inducible ATP-independent RNA helicase [Escherichia coli]
 gi|209758406|gb|ACI77515.1| inducible ATP-independent RNA helicase [Escherichia coli]
          Length = 646

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 24  TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 84  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 140

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 141 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 200

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 201 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 258 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 318 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 377

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 378 ERTMKLTIPEVELPNAEL 395


>gi|193067315|ref|ZP_03048283.1| cold-shock DEAD box protein A [Escherichia coli E110019]
 gi|192959272|gb|EDV89707.1| cold-shock DEAD box protein A [Escherichia coli E110019]
          Length = 629

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|191168055|ref|ZP_03029855.1| cold-shock DEAD box protein A [Escherichia coli B7A]
 gi|218555734|ref|YP_002388647.1| ATP-dependent RNA helicase DeaD [Escherichia coli IAI1]
 gi|260857291|ref|YP_003231182.1| ATP-dependent RNA helicase DeaD [Escherichia coli O26:H11 str.
           11368]
 gi|260869914|ref|YP_003236316.1| ATP-dependent RNA helicase DeaD [Escherichia coli O111:H- str.
           11128]
 gi|293449499|ref|ZP_06663920.1| ATP-dependent RNA helicase DeaD [Escherichia coli B088]
 gi|190901924|gb|EDV61673.1| cold-shock DEAD box protein A [Escherichia coli B7A]
 gi|218362502|emb|CAR00126.1| ATP-dependent RNA helicase [Escherichia coli IAI1]
 gi|257755940|dbj|BAI27442.1| ATP-dependent RNA helicase DeaD [Escherichia coli O26:H11 str.
           11368]
 gi|257766270|dbj|BAI37765.1| ATP-dependent RNA helicase DeaD [Escherichia coli O111:H- str.
           11128]
 gi|291322589|gb|EFE62018.1| ATP-dependent RNA helicase DeaD [Escherichia coli B088]
 gi|323154376|gb|EFZ40577.1| cold-shock DEAD box protein A [Escherichia coli EPECa14]
 gi|323178875|gb|EFZ64451.1| cold-shock DEAD box protein A [Escherichia coli 1180]
 gi|323183117|gb|EFZ68515.1| cold-shock DEAD box protein A [Escherichia coli 1357]
          Length = 629

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|89109927|ref|AP_003707.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111550|ref|NP_417631.2| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|110643403|ref|YP_671133.1| ATP-dependent RNA helicase DeaD [Escherichia coli 536]
 gi|161485815|ref|NP_708963.3| ATP-dependent RNA helicase DeaD [Shigella flexneri 2a str. 301]
 gi|161486111|ref|NP_755783.2| ATP-dependent RNA helicase DeaD [Escherichia coli CFT073]
 gi|161486429|ref|NP_838673.2| ATP-dependent RNA helicase DeaD [Shigella flexneri 2a str. 2457T]
 gi|161984848|ref|YP_409545.2| ATP-dependent RNA helicase DeaD [Shigella boydii Sb227]
 gi|161986443|ref|YP_312118.2| ATP-dependent RNA helicase DeaD [Shigella sonnei Ss046]
 gi|170018586|ref|YP_001723540.1| ATP-dependent RNA helicase DeaD [Escherichia coli ATCC 8739]
 gi|170082699|ref|YP_001732019.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170684314|ref|YP_001745436.1| ATP-dependent RNA helicase DeaD [Escherichia coli SMS-3-5]
 gi|191172194|ref|ZP_03033737.1| cold-shock DEAD box protein A [Escherichia coli F11]
 gi|193062213|ref|ZP_03043309.1| cold-shock DEAD box protein A [Escherichia coli E22]
 gi|194427708|ref|ZP_03060255.1| cold-shock DEAD box protein A [Escherichia coli B171]
 gi|194438758|ref|ZP_03070844.1| cold-shock DEAD box protein A [Escherichia coli 101-1]
 gi|215488480|ref|YP_002330911.1| ATP-dependent RNA helicase DeaD [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218550447|ref|YP_002384238.1| ATP-dependent RNA helicase DeaD [Escherichia fergusonii ATCC 35469]
 gi|218560234|ref|YP_002393147.1| ATP-dependent RNA helicase DeaD [Escherichia coli S88]
 gi|218691454|ref|YP_002399666.1| ATP-dependent RNA helicase DeaD [Escherichia coli ED1a]
 gi|218696869|ref|YP_002404536.1| ATP-dependent RNA helicase DeaD [Escherichia coli 55989]
 gi|238902266|ref|YP_002928062.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|253772002|ref|YP_003034833.1| ATP-dependent RNA helicase DeaD [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163106|ref|YP_003046214.1| ATP-dependent RNA helicase DeaD [Escherichia coli B str. REL606]
 gi|256018918|ref|ZP_05432783.1| ATP-dependent RNA helicase DeaD [Shigella sp. D9]
 gi|256024262|ref|ZP_05438127.1| ATP-dependent RNA helicase DeaD [Escherichia sp. 4_1_40B]
 gi|260845977|ref|YP_003223755.1| ATP-dependent RNA helicase DeaD [Escherichia coli O103:H2 str.
           12009]
 gi|293416596|ref|ZP_06659235.1| ATP-dependent RNA helicase DeaD [Escherichia coli B185]
 gi|301025993|ref|ZP_07189475.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 196-1]
 gi|306816494|ref|ZP_07450626.1| ATP-dependent RNA helicase DeaD [Escherichia coli NC101]
 gi|307139849|ref|ZP_07499205.1| ATP-dependent RNA helicase DeaD [Escherichia coli H736]
 gi|312968499|ref|ZP_07782708.1| cold-shock DEAD box protein A [Escherichia coli 2362-75]
 gi|312972567|ref|ZP_07786740.1| cold-shock DEAD box protein A [Escherichia coli 1827-70]
 gi|331659451|ref|ZP_08360393.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA206]
 gi|331664776|ref|ZP_08365681.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA143]
 gi|331669991|ref|ZP_08370836.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA271]
 gi|71154182|sp|P0A9P7|DEAD_ECOL6 RecName: Full=Cold-shock DEAD box protein A; AltName:
           Full=ATP-dependent RNA helicase deaD
 gi|71154193|sp|P0A9P6|DEAD_ECOLI RecName: Full=Cold-shock DEAD box protein A; AltName:
           Full=ATP-dependent RNA helicase deaD; AltName:
           Full=Translation factor W2
 gi|71154222|sp|P0A9P8|DEAD_SHIFL RecName: Full=Cold-shock DEAD box protein A; AltName:
           Full=ATP-dependent RNA helicase deaD
 gi|85675958|dbj|BAE77208.1| ATP-dependent RNA helicase [Escherichia coli str. K12 substr.
           W3110]
 gi|87082221|gb|AAC76196.2| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|110344995|gb|ABG71232.1| probable ATP-dependent RNA helicase DeaD [Escherichia coli 536]
 gi|169753514|gb|ACA76213.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
 gi|169890534|gb|ACB04241.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170522032|gb|ACB20210.1| cold-shock DEAD box protein A [Escherichia coli SMS-3-5]
 gi|190907504|gb|EDV67100.1| cold-shock DEAD box protein A [Escherichia coli F11]
 gi|192932433|gb|EDV85031.1| cold-shock DEAD box protein A [Escherichia coli E22]
 gi|194414216|gb|EDX30491.1| cold-shock DEAD box protein A [Escherichia coli B171]
 gi|194422230|gb|EDX38231.1| cold-shock DEAD box protein A [Escherichia coli 101-1]
 gi|215266552|emb|CAS10991.1| ATP-dependent RNA helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|218353601|emb|CAU99787.1| ATP-dependent RNA helicase [Escherichia coli 55989]
 gi|218357988|emb|CAQ90634.1| ATP-dependent RNA helicase [Escherichia fergusonii ATCC 35469]
 gi|218367003|emb|CAR04774.1| ATP-dependent RNA helicase [Escherichia coli S88]
 gi|218429018|emb|CAR09825.1| ATP-dependent RNA helicase [Escherichia coli ED1a]
 gi|238860045|gb|ACR62043.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|242378707|emb|CAQ33497.1| DeaD, DEAD-box RNA helicase [Escherichia coli BL21(DE3)]
 gi|253323046|gb|ACT27648.1| DEAD/DEAH box helicase domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975007|gb|ACT40678.1| ATP-dependent RNA helicase [Escherichia coli B str. REL606]
 gi|253979163|gb|ACT44833.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
 gi|257761124|dbj|BAI32621.1| ATP-dependent RNA helicase DeaD [Escherichia coli O103:H2 str.
           12009]
 gi|260447809|gb|ACX38231.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
 gi|291431952|gb|EFF04935.1| ATP-dependent RNA helicase DeaD [Escherichia coli B185]
 gi|299879888|gb|EFI88099.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 196-1]
 gi|305850059|gb|EFM50518.1| ATP-dependent RNA helicase DeaD [Escherichia coli NC101]
 gi|307555258|gb|ADN48033.1| cold-shock DeaD box ATP-dependent RNA helicase [Escherichia coli
           ABU 83972]
 gi|307625237|gb|ADN69541.1| ATP-dependent RNA helicase DeaD [Escherichia coli UM146]
 gi|309703590|emb|CBJ02930.1| ATP-dependent RNA helicase (DEAD-box protein) [Escherichia coli
           ETEC H10407]
 gi|310332509|gb|EFP99722.1| cold-shock DEAD box protein A [Escherichia coli 1827-70]
 gi|312286717|gb|EFR14628.1| cold-shock DEAD box protein A [Escherichia coli 2362-75]
 gi|313648596|gb|EFS13038.1| cold-shock DEAD box protein A [Shigella flexneri 2a str. 2457T]
 gi|315137750|dbj|BAJ44909.1| ATP-dependent RNA helicase DeaD [Escherichia coli DH1]
 gi|320181438|gb|EFW56356.1| Cold-shock DEAD-box protein A [Shigella boydii ATCC 9905]
 gi|320194648|gb|EFW69278.1| Cold-shock DEAD-box protein A [Escherichia coli WV_060327]
 gi|323162856|gb|EFZ48691.1| cold-shock DEAD box protein A [Escherichia coli E128010]
 gi|323165120|gb|EFZ50910.1| cold-shock DEAD box protein A [Shigella sonnei 53G]
 gi|323173578|gb|EFZ59207.1| cold-shock DEAD box protein A [Escherichia coli LT-68]
 gi|323189215|gb|EFZ74499.1| cold-shock DEAD box protein A [Escherichia coli RN587/1]
 gi|323936142|gb|EGB32436.1| DEAD/DEAH box helicase [Escherichia coli E1520]
 gi|323941736|gb|EGB37915.1| DEAD/DEAH box helicase [Escherichia coli E482]
 gi|323951318|gb|EGB47193.1| DEAD/DEAH box helicase [Escherichia coli H252]
 gi|323957689|gb|EGB53403.1| DEAD/DEAH box helicase [Escherichia coli H263]
 gi|323961066|gb|EGB56681.1| DEAD/DEAH box helicase [Escherichia coli H489]
 gi|323966344|gb|EGB61778.1| DEAD/DEAH box helicase [Escherichia coli M863]
 gi|323970273|gb|EGB65544.1| DEAD/DEAH box helicase [Escherichia coli TA007]
 gi|323979119|gb|EGB74197.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
 gi|324115232|gb|EGC09196.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
 gi|324119529|gb|EGC13411.1| DEAD/DEAH box helicase [Escherichia coli E1167]
 gi|325498745|gb|EGC96604.1| ATP-dependent RNA helicase [Escherichia fergusonii ECD227]
 gi|327251943|gb|EGE63629.1| cold-shock DEAD box protein A [Escherichia coli STEC_7v]
 gi|330909220|gb|EGH37734.1| cold-shock DEAD-box protein A [Escherichia coli AA86]
 gi|331054033|gb|EGI26062.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA206]
 gi|331058024|gb|EGI30006.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA143]
 gi|331062904|gb|EGI34818.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA271]
 gi|332086106|gb|EGI91268.1| cold-shock DEAD box protein A [Shigella boydii 5216-82]
 gi|332090717|gb|EGI95811.1| cold-shock DEAD box protein A [Shigella boydii 3594-74]
 gi|332752322|gb|EGJ82712.1| cold-shock DEAD box protein A [Shigella flexneri 4343-70]
 gi|332752849|gb|EGJ83234.1| cold-shock DEAD box protein A [Shigella flexneri K-671]
 gi|332754390|gb|EGJ84756.1| cold-shock DEAD box protein A [Shigella flexneri 2747-71]
 gi|332765159|gb|EGJ95386.1| csdA, DEAD-box RNA helicase [Shigella flexneri 2930-71]
 gi|332999241|gb|EGK18827.1| cold-shock DEAD box protein A [Shigella flexneri K-272]
 gi|333000407|gb|EGK19990.1| cold-shock DEAD box protein A [Shigella flexneri K-218]
 gi|333014540|gb|EGK33887.1| cold-shock DEAD box protein A [Shigella flexneri K-304]
 gi|333014963|gb|EGK34307.1| cold-shock DEAD box protein A [Shigella flexneri K-227]
          Length = 629

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|290473453|ref|YP_003466320.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus
           bovienii SS-2004]
 gi|289172753|emb|CBJ79524.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus
           bovienii SS-2004]
          Length = 662

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 136/379 (35%), Positives = 227/379 (59%), Gaps = 7/379 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 7   ISFADLGLSAPILAALGDMGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++     ++ P+ L+L PTRELA QVA+   ++ K       + +  G  ++ Q + L
Sbjct: 67  HNIDA---ELKAPQILVLAPTRELAVQVAEACSEFSKQMRSVNVVALYGGQRYDVQLRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  V++ TPGR+LDH  RG L ++N++ LV+DEAD ML MGFI  ++NI S +P   Q
Sbjct: 124 RQGPQVVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+ +P+ + + +  +T   I   + + +     +        
Sbjct: 184 TALFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWSVHGVRKNEA---LVRF 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + ++
Sbjct: 241 LETEDFDATIIFVRTKNATLEVAETLERHGYNSAALNGDMNQALREQTLERLKDGRLDIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 301 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 360

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +E+ ++  +  +    + L
Sbjct: 361 VERTMKLTIPEVELPNAEL 379


>gi|317049189|ref|YP_004116837.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp.
           At-9b]
 gi|316950806|gb|ADU70281.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
          Length = 442

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 133/380 (35%), Positives = 206/380 (54%), Gaps = 9/380 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ A+ + G+ +PT IQ + IP  L+  DV G A TGTGKTA+++LP M 
Sbjct: 5   TFSELELDESLLDALQEKGFTRPTAIQAEAIPAALEGRDVLGSAPTGTGKTAAYLLPAMQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++  R +   PR LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +   
Sbjct: 65  HLIDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT   D ++  +E  L +P  +E +      + I+  +        K    L   L
Sbjct: 185 LLFSATLEGDNIKDFAERLLNDPVAVEADPSQRERKKIQQWYYRADDLEHK--TKLLVHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  +   I+F  +++ +  L   L + G     + G + Q  R + L    +G + ++
Sbjct: 243 LKQPEVTRSIVFVRKRERLHELVTWLHEAGIRCSYLEGEMVQAKRNEALKRLNDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI DV HVFN+D+P  A+ Y+HRIGRT RAGR G A +LV   D   +  
Sbjct: 303 VATDVAARGIDIEDVSHVFNYDMPRTADIYLHRIGRTARAGRKGIALSLVEAHDHVLLGK 362

Query: 360 IEKLIE-----KKVDWLNGD 374
           I + I      + +D L  +
Sbjct: 363 ISRYINEPLKSRTIDELRPE 382


>gi|307188310|gb|EFN73102.1| Probable ATP-dependent RNA helicase DDX43 [Camponotus floridanus]
          Length = 677

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 119/409 (29%), Positives = 211/409 (51%), Gaps = 6/409 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILEKGRA 68
           P+++  +   G+ KP+PIQ +  P++L   D+ GIAQTGTGKT +F+LP ++ I  +   
Sbjct: 266 PEILREIQKQGFTKPSPIQCQAWPILLSGQDLIGIAQTGTGKTLAFLLPALIHIDGQITP 325

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKLERGADVLI 127
           R   P   +L         +    E    +Y    A+ + G    + Q   + +G  ++I
Sbjct: 326 RDERPGPNVLVMAPTRELALQIEKEVGKYSYRGIKAVCVYGGGNRKEQINIVTKGVQIVI 385

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+ D    G L ++ +  L++DEADRMLDMGF P I+     V   RQT++ SAT 
Sbjct: 386 ATPGRLNDLVQAGVLNVSAVTYLILDEADRMLDMGFEPQIRKTLLGVRPDRQTVMTSATW 445

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
              ++++++++++NP ++ V +    A       +    +  K   +  Q  +   +   
Sbjct: 446 PQGVRRLAQSYMKNPIQVCVGSLDLAAVHTVTQKICMINEDEKLDMMH-QFFREMGSYDK 504

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            I+F  +K  V ++   L        +IHG+ +Q  R + L + K G +Q+++A+D+A+R
Sbjct: 505 VIVFFGKKAKVDDISSDLALSKIDCQSIHGDREQADREQALEDLKTGAVQILLATDVASR 564

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           G+DI D+ HV N+D P   E Y+HR+GRTGRAGR G++ T + ++D  H   +  ++E+ 
Sbjct: 565 GIDIEDITHVLNYDFPKDIEEYVHRVGRTGRAGRTGESITFMTRQDWHHAKELINILEEA 624

Query: 368 VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              +  +L  +    E+ ++ +     + + +     G   R  N S Q
Sbjct: 625 NQEVPEELYKMA---ERYEVWKQKKDSERSYLRNSRDGNRSRDGNRSRQ 670


>gi|261820134|ref|YP_003258240.1| ATP-dependent RNA helicase DeaD [Pectobacterium wasabiae WPP163]
 gi|261604147|gb|ACX86633.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 632

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 136/378 (35%), Positives = 226/378 (59%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   SFSDLGLSAPIINALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFALPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+ +    + +  G  ++ Q + L 
Sbjct: 67  NLKP---ELKAPQMLVLAPTRELAVQVAEACNDFAKHMHGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + +P T QT
Sbjct: 124 GGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPATHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F+++P+ + + +  +T   I   +         +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVQGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  +
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|306829117|ref|ZP_07462307.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC
           6249]
 gi|304428203|gb|EFM31293.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC
           6249]
          Length = 525

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 144/373 (38%), Positives = 226/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIRT---EEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +++IE L++DEAD ML+MGF+  I+ I S VP +RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEAIISRVPESRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + ++++   F++ P+ +++     T E ++  ++    Q             
Sbjct: 178 LLFSATMPEAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|229035098|ref|ZP_04189045.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1271]
 gi|228728283|gb|EEL79312.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1271]
          Length = 481

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 147/448 (32%), Positives = 247/448 (55%), Gaps = 18/448 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++  LS +V  A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  +++K+S  ++  P  IE+     T + IEH     +    ++   L + +  
Sbjct: 182 LFSATLPKDVEKLSRTYMNAPTHIEIKAAGITTDKIEH---TLFEVREEEKLSLLKDITM 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK--NNPIPQKSTGFDRRK---KNYSSQ 416
           + I  ++         L P  E++   +     K    PI +K    D  K   K Y + 
Sbjct: 359 EYIGFEIP------KELAPSKEEVMKGKAIFEEKIYAKPIIKKDKSADLNKGIMKLYFNG 412

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
                ++  + +  + + IQ   AD +G
Sbjct: 413 GKKKKIRAVDFVGTIAK-IQGVSADDIG 439


>gi|46581710|ref|YP_012518.1| DEAD-box ATP dependent DNA helicase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46451133|gb|AAS97778.1| ATP-dependent RNA helicase, DEAD/DEAH family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235346|gb|ADP88200.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1]
          Length = 532

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 145/370 (39%), Positives = 214/370 (57%), Gaps = 7/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L  +++ A+ + G+ +P+PIQ   IP +L+  DV G AQTGTGKTA+F LP+L 
Sbjct: 6   SFKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLPLLQ 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            ++     V+    L+L PTRELA QVA+      K+   + +  + GG P E Q   L 
Sbjct: 66  RIDAADRSVQ---ALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASALR 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGRILDH NRG L +  + + V+DEAD MLDMGF   I+ I S +P   Q+
Sbjct: 123 RGAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWVQS 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM D + +++  FL+ P+ + V     T    E  +                   
Sbjct: 183 AFFSATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCRI---F 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L  +L+++G    A+HG+++Q  R +++S F+ G I ++V
Sbjct: 240 DAYIPRKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV  V NFD+PN  E Y+HRIGRTGRAGR G+AF+  A  D+  +  I
Sbjct: 300 ATDVAARGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGRAFSFAAGRDVYKLRDI 359

Query: 361 EKLIEKKVDW 370
           +++   ++D 
Sbjct: 360 QRVTGSRIDR 369


>gi|210623578|ref|ZP_03293904.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
 gi|210153448|gb|EEA84454.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
          Length = 538

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 143/371 (38%), Positives = 215/371 (57%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL ++  +  A+ + G+ +P+PIQ K+IP++L+  DV G AQTGTGKTA+F +P+L  
Sbjct: 6   FEDLDINQNIKKAIAEMGFEEPSPIQAKSIPVILEGKDVIGQAQTGTGKTAAFSIPILEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++     ++     +L PTRELA QV+    K  K       L I  G P + Q K L+ 
Sbjct: 66  IDPNDRSLQAI---VLCPTRELAIQVSQEIRKLAKYMQGIKTLPIYGGQPIDRQIKALKG 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+I TPGR +DH  R  +   N++++V+DEAD MLDMGF   I+ I   VP  RQT 
Sbjct: 123 GVQVIIGTPGRTIDHIKRKTIKPGNVKMVVLDEADEMLDMGFREDIETILENVPEERQTT 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   + ++++ +   P+ I+V     T E I+  ++ T A        +   L  
Sbjct: 183 FFSATMPKAILELTKKYQNEPEHIKVVRKELTVENIKQYYIETRASNK---IEVLSRLID 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  ++FCN KK    L   L+ +G+   A+HG++ Q  R  ++  F+ GTI ++VA
Sbjct: 240 VYNPKLSVVFCNTKKGADELVGELQGRGYFADALHGDLKQVQRDIVMDKFRNGTIDILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFNFD+P   E Y+HRIGRTGRAGR G +F+ V   D++ +  IE
Sbjct: 300 TDVAARGIDVDDVECVFNFDLPQDEEYYVHRIGRTGRAGREGLSFSFVYGRDMRKMKDIE 359

Query: 362 KLIEKKVDWLN 372
           +  + K++   
Sbjct: 360 RYTKSKLEKHP 370


>gi|209809226|ref|YP_002264764.1| putative ATP-dependent RNA helicase 1 [Aliivibrio salmonicida
           LFI1238]
 gi|208010788|emb|CAQ81183.1| putative ATP-dependent RNA helicase 1 [Aliivibrio salmonicida
           LFI1238]
          Length = 418

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 162/422 (38%), Positives = 241/422 (57%), Gaps = 20/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+ ++V  V + G+ + TP+Q + IPLVL+ HDV   AQTGTGKTA+F LP++
Sbjct: 1   MSFASLGLTTELVNIVSELGFTEATPVQQQAIPLVLKGHDVLAGAQTGTGKTAAFGLPLI 60

Query: 61  TI----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                      A  ++ RTLIL PTRELA QV D+   Y KN +L   +  GG   + Q 
Sbjct: 61  QRLIESPSPRIANSKVIRTLILTPTRELAQQVFDSLVTYTKNTDLKCVVAYGGTSVKIQT 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  GAD+L+ TPGR+LDH +   + +N  E LV+DEADRMLDMGF+P IQ I   +  
Sbjct: 121 ENLIGGADILVATPGRLLDHLHLNNITLNQAEYLVLDEADRMLDMGFMPDIQRILRKMAS 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             QTL FSAT  D++++++   L NPK ++V   +STA+T+E            +     
Sbjct: 181 KHQTLFFSATFGDKIKEIAYRILDNPKVVQVTPSNSTADTVEQMVYPVDKHRKSEL---L 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L      K  ++F   K+   +L   L+  G    +I+G+  Q +R++ L  FK G I
Sbjct: 238 AYLIGSRNWKQVLVFTKTKQGSDDLVKELKLDGIKAASINGDKSQGARIRALEEFKTGKI 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V N+++P +AE+Y+HRIGRTGRAG  GKA +L++ ++   
Sbjct: 298 RALIATDVAARGLDIEQLECVINYELPFKAEDYVHRIGRTGRAGHTGKAVSLMSADEDYL 357

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           + AIE L++ ++  +WL G     N P            ++N P   +    D+RK    
Sbjct: 358 LKAIETLLDTRLPQEWLKGYEPDPNAP-----------KKENQPRQSRGRSSDKRKMKAK 406

Query: 415 SQ 416
           + 
Sbjct: 407 TN 408


>gi|317124106|ref|YP_004098218.1| ATP-dependent RNA helicase CsdA [Intrasporangium calvum DSM 43043]
 gi|315588194|gb|ADU47491.1| ATP-dependent RNA helicase CsdA [Intrasporangium calvum DSM 43043]
          Length = 605

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 146/380 (38%), Positives = 216/380 (56%), Gaps = 8/380 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL  +++ A  D GY  P+PIQ  TIP +L+  DV G+AQTGTGKTA+F LP+L 
Sbjct: 27  TFADLGLDERILKATRDLGYEHPSPIQAATIPAMLEGRDVVGLAQTGTGKTAAFALPILA 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+    + + P+ L+L PTRELA QV + FE+Y  N      L +  G  +  Q   L 
Sbjct: 87  RLDL---KQKTPQALVLAPTRELALQVCEAFERYAANLRGVHVLPVYGGQGYGVQLSALR 143

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGRI+DH  +G L ++ +  LV+DEAD ML MGF   ++ I +  P  +Q 
Sbjct: 144 RGVHVVVGTPGRIMDHLEKGTLDLSELRFLVLDEADEMLKMGFAEDVETILADTPADKQV 203

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  +++++S+  L +P  I V   ++TA  I   ++                ++
Sbjct: 204 ALFSATMPAQIRRISKQHLTDPVEITVKAKTTTAPNITQRYLIVSYPQKVDALTRILEVE 263

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + M   I+F   K     L   L  +GFS  AI+G+I Q  R + +   + G + ++V
Sbjct: 264 NFEGM---IVFVRTKNETETLAEKLRARGFSAAAINGDIVQAQRERTVDQLRSGKLDILV 320

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV NFD+P   E+Y+HRIGRTGRAGR G A + V   +   + AI
Sbjct: 321 ATDVAARGLDVERISHVVNFDIPTDTESYVHRIGRTGRAGRSGDAISFVTPRERHLLKAI 380

Query: 361 EKLIEKKVDWL-NGDLSSLN 379
           EK   + +  +    +  +N
Sbjct: 381 EKATRQGLTEMRPPTVEDIN 400


>gi|227548399|ref|ZP_03978448.1| superfamily II helicase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079443|gb|EEI17406.1| superfamily II helicase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 683

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 142/371 (38%), Positives = 224/371 (60%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L   V+ AV   G+ +P+PIQ +TIPL+++  DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 106 FEKLDLPDSVIAAVKMVGFEQPSPIQAETIPLLMEGRDVVGLAQTGTGKTAAFALPVLSQ 165

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLER 121
           ++    ++R P+ L+L PTRELA QVAD+F+ +  +      L I G   +  Q   L R
Sbjct: 166 IDP---QLRHPQALVLAPTRELALQVADSFQSFADHLGKIQVLPIYGGQAYGIQLSGLRR 222

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  +G L ++N+  LV+DEAD ML+MGF   ++ I    P T+Q  
Sbjct: 223 GAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPNTKQVA 282

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++K+S+ +L +P  + V + + T   I   ++ T  +           +  
Sbjct: 283 LFSATMPNGIRKISKQYLNDPAEVTVKSETRTNTNITQRYLFTAHRNKLDAITRILEVTE 342

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + M   I+F   K     L   L  +GFS  AI+G+I Q+ R + +   ++G + ++VA
Sbjct: 343 FEAM---IVFVRTKHETEELAEKLRARGFSAAAINGDIAQQQRERTVDQLRDGRLDILVA 399

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HVFN+D+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 400 TDVAARGLDVERISHVFNYDIPNDIESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 459

Query: 362 KLIEKKVDWLN 372
           ++    ++ + 
Sbjct: 460 RVTNATIEEME 470


>gi|262190914|ref|ZP_06049130.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
 gi|297580199|ref|ZP_06942126.1| ATP-dependent RNA helicase [Vibrio cholerae RC385]
 gi|262033210|gb|EEY51732.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
 gi|297535845|gb|EFH74679.1| ATP-dependent RNA helicase [Vibrio cholerae RC385]
          Length = 422

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 148/409 (36%), Positives = 231/409 (56%), Gaps = 11/409 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGL  +++  + + G V PTPIQ + IP VLQ  DV   AQTGTGKTA+F LP++
Sbjct: 6   ITFSQLGLDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65

Query: 61  TILEKGRARVRMPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               +   +       I      PTRELA QV D+ + Y K   L +  + GG   + Q 
Sbjct: 66  QRFIEQPWQRETNSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G D+LI TPGR+LDH +   L +  +E+LV+DEADRMLDMGF+P +Q +   +  
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSAT   +++ V+   +++P  ++V   +STAET+       Y    K+   L 
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETV---QQMVYPVDKKRKRELL 242

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L      +  ++F   ++    L   L+  G    +I+G+  Q +R K L +FK G +
Sbjct: 243 SYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L++ ++   
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAISLLSHDEQPQ 362

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           ++AIE+L+  ++  +WL G   S  P + + +  + +  R +     K+
Sbjct: 363 LEAIERLLNTRLPQEWLKGFEPS--PVVHEENSPRRSAGRSSEKRKLKA 409


>gi|321260432|ref|XP_003194936.1| ATP-dependent RNA helicase DBP2 (p68-like protein) [Cryptococcus
           gattii WM276]
 gi|317461408|gb|ADV23149.1| ATP-dependent RNA helicase DBP2 (p68-like protein), putative
           [Cryptococcus gattii WM276]
          Length = 537

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 207/379 (54%), Gaps = 2/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    ++  +   G+  P+ IQ +  P+ L   DV  IA+TG+GKT SF LP + 
Sbjct: 110 TFEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDVVAIAETGSGKTISFCLPAMV 169

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  LIL PTRELA Q+     K+G++  +    + GG P   Q + L
Sbjct: 170 HINAQPLLAPGDGPIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQIRDL 229

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG ++ + TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 230 QRGVEICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQ 289

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   E+Q+++ +FL +  ++ + +   TA       V     + K+  LL  L 
Sbjct: 290 TLLFSATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSHLE 349

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +IF   K+   +L   L   G+   AIHG+  Q  R  +L+ FK G   +M
Sbjct: 350 KISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIM 409

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ D+G+V N+D PN  E+YIHRIGRTGRAGR G ++T    ++ K    
Sbjct: 410 LATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKSARE 469

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + +++ +    +  +L  +
Sbjct: 470 LVQILRESKADIPPELEEM 488


>gi|115444197|ref|NP_001045878.1| Os02g0146600 [Oryza sativa Japonica Group]
 gi|75325389|sp|Q6Z2Z4|IF4A3_ORYSJ RecName: Full=Eukaryotic initiation factor 4A-3; Short=eIF-4A-3;
           AltName: Full=ATP-dependent RNA helicase eIF4A-3;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 23;
           AltName: Full=eIF4A-2
 gi|45736055|dbj|BAD13081.1| putative translational initiation factor eIF-4A [Oryza sativa
           Japonica Group]
 gi|113535409|dbj|BAF07792.1| Os02g0146600 [Oryza sativa Japonica Group]
 gi|125538069|gb|EAY84464.1| hypothetical protein OsI_05839 [Oryza sativa Indica Group]
 gi|215707096|dbj|BAG93556.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222622164|gb|EEE56296.1| hypothetical protein OsJ_05367 [Oryza sativa Japonica Group]
          Length = 414

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 197/377 (52%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 42  SFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G       ++L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 102 QLDYGLVE---CQSLVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS 158

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 159 GVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 218

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 219 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDL--YE 276

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 277 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  I+
Sbjct: 337 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 396

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ L  +++ L
Sbjct: 397 RFYNVTIEELPANVADL 413


>gi|312892306|ref|ZP_07751801.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311295090|gb|EFQ72264.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 428

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 149/384 (38%), Positives = 231/384 (60%), Gaps = 6/384 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY  PTPIQ ++IP++L+R D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MSFENLKLIEPILKALKHEGYTNPTPIQEQSIPIILERKDLLGCAQTGTGKTAAFAIPIL 60

Query: 61  TILEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            IL +        +  +TLIL PTRELA Q+ ++F  YGK+  L   ++ GG+    Q +
Sbjct: 61  QILYQEKVQNRDHKGIKTLILTPTRELAIQIDESFAAYGKHTGLKHLVIFGGVSQHHQVE 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+RG D+L+ TPGR+LD   +  + + +++ILV+DEADRMLDMGF+  ++ I + +P  
Sbjct: 121 ALKRGVDILVATPGRLLDLVQQKFVHLESLKILVLDEADRMLDMGFVNDVKKIIAKIPVK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL FSATM  E+Q +++  L  P+++EV   SSTA+TI+           K       
Sbjct: 181 RQTLFFSATMPKEIQTLADTILNKPEKVEVTPVSSTADTIQQGIYFVDKNDKKSL---LI 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +     ++  ++F   K     +   L + G +  AIHGN  Q +R + L+NFK  + +
Sbjct: 238 HILKDKKIETALVFTRTKHGADKVVKDLIRVGITAEAIHGNKSQNARQRALTNFKNRSTR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ D+ HV N+++PN  E Y+HRIGRTGRAG  G A +    ++ + +
Sbjct: 298 ILVATDIAARGIDVDDLTHVINYELPNVPETYVHRIGRTGRAGASGIALSFCDADEGEFL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPP 381
             I KLI K +  ++     +  P
Sbjct: 358 YDIHKLITKAIPVIDDQPYPMKAP 381


>gi|301047996|ref|ZP_07195038.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 185-1]
 gi|300300139|gb|EFJ56524.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 185-1]
          Length = 646

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 24  TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 84  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 140

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 141 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPAGHQT 200

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 201 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 258 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 318 ATDVAARGLDVERISLVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 377

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 378 ERTMKLTIPEVELPNAEL 395


>gi|21673860|ref|NP_661925.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
 gi|21646994|gb|AAM72267.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
          Length = 414

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 154/407 (37%), Positives = 230/407 (56%), Gaps = 6/407 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LG+   +  A+ + GY  PTPIQ + IP++L+ +D+   AQTGTGKTA+F LP+L
Sbjct: 1   MPFSALGIIDHLRKALAEEGYNSPTPIQKEAIPVILEGNDLLACAQTGTGKTAAFALPVL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 +     R  R L+L PTRELA Q+ ++F  YG++  L   ++ GG+    Q  +
Sbjct: 61  QRLHQSRMHGEKRKIRCLVLTPTRELAIQIGESFTAYGRHTGLINTVIFGGVNQNPQTAR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+LD   +G L + +IE  V+DEADRMLDMGFI  I+ + +++P  R
Sbjct: 121 LVRGVDILVATPGRLLDLIGQGHLHLRDIEYFVLDEADRMLDMGFIHDIRRVLAVLPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+ K+S   L NPK + V   SST E I    +    +           
Sbjct: 181 QSLFFSATMPPEIIKLSAAILHNPKEVMVTPVSSTVEIINQQILFVDRENKNSLLAHLL- 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +  +++ ++F   K     +   L     +  AIHGN  Q +R + L NFK    ++
Sbjct: 240 --KERNIESALVFTRTKHGADKVARFLAHHDITAEAIHGNKSQNARQRALGNFKTRQTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI ++ +V N D+PN  E Y+HRIGRTGRAG  G A++    E+  ++ 
Sbjct: 298 LVATDIAARGIDIDELEYVINIDLPNIPETYVHRIGRTGRAGNRGAAYSFCNAEEKAYLR 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            IEKLI +K+  +      +   + +   A    ARK  P  +K +G
Sbjct: 358 DIEKLIARKIPVIEDHPFPMVNTIPENAAASKQPARKV-PHQKKPSG 403


>gi|91228785|ref|ZP_01262694.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
 gi|91187660|gb|EAS73983.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
          Length = 430

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 154/406 (37%), Positives = 229/406 (56%), Gaps = 11/406 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P+VV A+ + GY K TPIQ K IP+  + HD+   AQTGTGKTA+F LPM+
Sbjct: 1   MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMI 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L               IL PTRELA Q+ADN + Y K  NL+VA + GG    +Q   
Sbjct: 61  QQLLDSNRSASRKTARALILAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQVTA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H  +G + + ++E LV DEADR+LDMGFI  ++ I   V    
Sbjct: 121 LENGVDILVATPGRLEEHIEQGNVSVAHLEFLVFDEADRILDMGFIHAVRKIMLDVDTDP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L  ++++ L+ PKRIEV   ++TA+T+ H       +   +       
Sbjct: 181 QIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAQTVAHVLYPVDQERKTELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   K  ++F N K+    +   L+  G      HG+  Q +R + L  FK G  ++
Sbjct: 239 -IGRKNWKQVLVFVNYKETANEVVKELKLDGIKAVVCHGDRAQSARRRALEEFKSGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V +++   + 
Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNRDEELTVV 357

Query: 359 AIEKLIEKKVDWL------NGDLSSLNPPLEKIDIAQHNHARKNNP 398
            +E LI++++  +           S    L      ++   R+NNP
Sbjct: 358 QVENLIQQRIRRIELAGYEPKQRESYIEKLHSKPAFKNRQGRRNNP 403


>gi|223997764|ref|XP_002288555.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975663|gb|EED93991.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 369

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 129/373 (34%), Positives = 198/373 (53%), Gaps = 5/373 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           + L P ++  +   G+ KP+ IQ + I  ++   DV   +Q+GTGKTA F +   + L+ 
Sbjct: 1   MNLKPTLLRGIYAYGFEKPSAIQQRAIRPIVCGRDVIAQSQSGTGKTAVFSI---SSLQL 57

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
              R   P+ LIL PTRELA Q        G   N+     IGG       K L++G  V
Sbjct: 58  LDERSNDPQVLILSPTRELAEQTQRVVSSLGDFMNVKCHACIGGKSLGEDRKVLQQGVQV 117

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           L  TPGR+ D   RG L    ++  +IDEAD ML+ GF   I +I   +P   Q +L SA
Sbjct: 118 LSGTPGRVYDLIKRGDLTTRALKAFIIDEADEMLNKGFKEQIYDIYRYLPPQTQVVLVSA 177

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           T+  E+ +++  F+ +P RI V     T E I+  FV+   +  K   L         T+
Sbjct: 178 TLPVEVLEMTRKFMNDPIRILVKRDELTLEGIKQFFVSVEKEEWKFDTLCDL--YDTLTV 235

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              +IFCN K+ V  L   + +  F+V A+HG++ Q  R K++ +F+ G+ ++++A+DL 
Sbjct: 236 TQAVIFCNTKQKVDWLATKMRESNFTVAAMHGDMTQDERDKVMEDFRSGSSRVLIATDLW 295

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
            RG+D+  V  V  +D+P   E YIHRIGR+GR GR G A   V  ED++ +  IE+   
Sbjct: 296 GRGIDVQQVSLVICYDLPTNRELYIHRIGRSGRFGRKGVAINFVRTEDVRTLRDIEQFYS 355

Query: 366 KKVDWLNGDLSSL 378
            ++D +  ++S L
Sbjct: 356 TQIDEMPLNVSDL 368


>gi|119510127|ref|ZP_01629266.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414]
 gi|119465188|gb|EAW46086.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414]
          Length = 437

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 170/439 (38%), Positives = 246/439 (56%), Gaps = 12/439 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS +++ AV + GY +PTPIQ++ IP VL   D+   AQTGTGKTA F LPML
Sbjct: 1   MSFSTLGLSHEIIRAVTEQGYTEPTPIQMQAIPAVLSGSDLLAGAQTGTGKTAGFTLPML 60

Query: 61  T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   ++         R LIL PTRELAAQV  +   YGK   L   ++ GG+    
Sbjct: 61  HRLSSDKNVKSTSHGYSPIRALILTPTRELAAQVESSVRDYGKYLKLNSMVMFGGVSINP 120

Query: 115 QNK-KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           Q +   E   D+L+ TPGR+LDH  +G + +++IEILV+DEADRMLDMGFI  I+ I SL
Sbjct: 121 QKRLLKEGRVDILVSTPGRLLDHVQQGTVNLSHIEILVLDEADRMLDMGFIRDIRRILSL 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ LLF AT +++++ ++   L  PK IEV   + TA+T+            ++  
Sbjct: 181 LPKQRQNLLFFATFSEKIKALAAGLLNRPKMIEVARRNVTADTVTQKVYKVDRDKKRQL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L  QD     ++F   K     L   L ++     AIHGN  Q SR   L+ FK 
Sbjct: 240 --LAHLIRQDNWYQVLVFTRTKYGADRLVKQLGEERIQALAIHGNKSQSSRTHTLAKFKN 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            ++Q++VA+D+AARGLDI ++ HV NFD+PN AE+Y+HRIGRTGRAG  G+A +LV+ ++
Sbjct: 298 NSLQVLVATDIAARGLDISELPHVVNFDLPNVAEDYVHRIGRTGRAGASGEAISLVSADE 357

Query: 354 IKHIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
              +  IEKLI +++  + + G   +     + I   + +  +    +PQ S      + 
Sbjct: 358 YHLLADIEKLIAQRLPFEVVAGFGGNSYTQPKAIPNERKHKPKTGKQLPQTSAKKSTPRT 417

Query: 412 NYSSQKSHIPLKESEKISK 430
               +KS      S + +K
Sbjct: 418 VTGGKKSDARPGGSRRRTK 436


>gi|329666667|gb|AEB92615.1| putative RNA helicase [Lactobacillus johnsonii DPC 6026]
          Length = 479

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 144/389 (37%), Positives = 226/389 (58%), Gaps = 15/389 (3%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           + L P+++ A+  +G+ + TPIQ KTIPLVL+  DV G AQTGTGKTA+F LP+L  L+K
Sbjct: 1   MNLKPEILKAIKRSGFEEATPIQEKTIPLVLEEKDVIGQAQTGTGKTAAFGLPILQNLDK 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
               ++     I+EPTRELA Q  +   + G++    V ++ GG     Q + L++   +
Sbjct: 61  QHDSIQAI---IIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALKQTPAI 117

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           L+ TPGR+LDH  RG + ++ ++ +V+DEAD MLDMGFI  I++I        QTLLFSA
Sbjct: 118 LVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILKYASSKHQTLLFSA 177

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           TM   + ++ E F+ +P+ +++     TA  I             +   +   L      
Sbjct: 178 TMPKPILRIGEKFMNDPEIVKIKGKELTANLI---DQYFVRAKENEKFDILCRLIDVQNP 234

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              +IF   K+ V  L   L+ +G++   IHG++ Q  RM +L  F++G + ++VA+D+A
Sbjct: 235 DLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVA 294

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARGLDI  V HV+N+D+P   ++Y+HRIGRTGRAG++G + T V   +I ++  IE+L  
Sbjct: 295 ARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTIEQLTH 354

Query: 366 KKV---------DWLNGDLSSLNPPLEKI 385
           KK+         +   G LS+ N  + ++
Sbjct: 355 KKMMPLKPPTDEEAFKGQLSAANKKVAEL 383


>gi|323308818|gb|EGA62055.1| Rrp3p [Saccharomyces cerevisiae FostersO]
          Length = 501

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 145/426 (34%), Positives = 227/426 (53%), Gaps = 8/426 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L P+++ A  +  Y KPTPIQ K IP  L+ HD+ G+AQTG+GKTA+F +P+L 
Sbjct: 82  SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 141

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   +         IL PTRELA Q+ + F+  G    +    ++GG+    Q + L R
Sbjct: 142 RLWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR 198

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH  N     +  ++ LV+DEADR+LDM F P +  I  ++P   +T
Sbjct: 199 KPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT 258

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSATMT ++ K+    L NP +  V+    T +T+    +           +     
Sbjct: 259 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNE 318

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               TM   IIF   K N   L        FS  A+HG+++Q  RM  L  FK G   ++
Sbjct: 319 FIGKTM---IIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSIL 375

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV++ D++ I  
Sbjct: 376 VATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 435

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+++ KK+   + D + +      +D A      + N   ++     + ++     + +
Sbjct: 436 IEEVLGKKLPKESVDKNIILTLRXSVDKANGEVVMEMNRRNKEKIARGKGRRGRMMTREN 495

Query: 420 IPLKES 425
           + + E 
Sbjct: 496 MDMGER 501


>gi|163803186|ref|ZP_02197068.1| ATP-dependent RNA helicase [Vibrio sp. AND4]
 gi|159173007|gb|EDP57841.1| ATP-dependent RNA helicase [Vibrio sp. AND4]
          Length = 437

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 140/432 (32%), Positives = 215/432 (49%), Gaps = 8/432 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L P+V+  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADLDLKPQVIEGLDKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 E    +   PR +I+ PTRELA Q+ ++ E    +  L  AL  GG  ++ Q  
Sbjct: 70  HLLTTPEHEGRKPTQPRAIIMAPTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G D+LI T GRI+D + +    +NNI+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           ++ L    + T   +     F       E        +T        +   +K    L Q
Sbjct: 190 KERLNMLFSATLSYRVQELAFEHMHN-PEHVVVEPEQKTGHRIQEELFYPSNKDKMTLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +D     IIF N K    ++   L   G  V  + G++ Q+ R KIL  F  G + 
Sbjct: 249 TLIEEDWPDRAIIFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   ++   ++
Sbjct: 309 LLVATDVAARGLHIPLVTHVFNFDLPDDCEDYVHRIGRTGRAGESGHSISFACEDYAVNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE+ IE  +   + D S+L   ++ +       A +       + G     +    ++
Sbjct: 369 PPIEEYIEHSIPVSDYDASAL---IQDLPAPLRMRAPRAQQRRTNTGGTRSGNRKPHGRR 425

Query: 418 SHIPLKESEKIS 429
              P + ++K S
Sbjct: 426 PRQPHQSAQKQS 437


>gi|254374244|ref|ZP_04989726.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548]
 gi|151571964|gb|EDN37618.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548]
          Length = 441

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 152/403 (37%), Positives = 237/403 (58%), Gaps = 8/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+  +  A+   GY KPTPIQ + IP+VL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MKFSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  +  +++   V+DEADRMLDMGFI  ++ I  L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++  FL NP+ +  +  ++T + I                +     
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   ++F   K     +   L   G S  AIHGN  Q +R K L++FK   I ++
Sbjct: 238 IKDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+PN AE+Y+HRIGRTGRAG+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           IE LI   +  + L G  ++ N P+  +  +    A+K + + 
Sbjct: 358 IEHLIGHLLPREELEGFEANHNVPITSM--SHKTKAKKIDEVK 398


>gi|254506284|ref|ZP_05118427.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
 gi|219550764|gb|EED27746.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
          Length = 426

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 154/406 (37%), Positives = 233/406 (57%), Gaps = 11/406 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA    SP++V A+ + GY K TP+Q K IP   + HD+   AQTGTGKTA+F LP++
Sbjct: 1   MSFASQNFSPEIVKALTECGYEKLTPVQQKAIPFARKGHDILANAQTGTGKTAAFALPIV 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 +   +    R +IL PTRELAAQ+A N + Y K  ++    + GG    +Q K 
Sbjct: 61  QNILDNEKPRQRHQTRAVILAPTRELAAQIASNIQDYTKYTDVKTVAIYGGAKMSSQQKA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G DVL+ TPGR+++H +   + + N+E LV DEADRMLDMGFI  I++I + V    
Sbjct: 121 LEAGVDVLVATPGRLIEHMDMNNVSLANLEFLVFDEADRMLDMGFISAIESIMAGVNTKP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT + ++  ++   L+ PKR+ V   + TA+TI H       +  ++       
Sbjct: 181 QTMLFSATFSAQMNTLAGKILRQPKRVSVARENVTADTIAHVVYPVEQERKRELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F N K+    L   L+  G      HG+  Q +R + L  FK G  ++
Sbjct: 239 -IGRKNWQQVLVFVNYKETANELVKELKLDGIKAVLCHGDKAQSARRRALDEFKSGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+D+AARGLDI ++ HV NFD+P  AE+Y+HRIGRTGRAG+ G A + V +E+   + 
Sbjct: 298 MIATDVAARGLDIQNLPHVVNFDMPFLAEDYVHRIGRTGRAGQRGNAVSFVNREEELTLQ 357

Query: 359 AIEKLIEKKV--DWLNG-DLSSLNPPLEKIDIA---QHNHARKNNP 398
            +E LI +++    L G +  + +  LE++      ++   R+NNP
Sbjct: 358 QVETLIGQRIYRKELEGYEPKNRDALLERMHTKPAFKNRRTRQNNP 403


>gi|213579752|ref|ZP_03361578.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 556

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|161486782|ref|NP_806876.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|161501917|ref|NP_457662.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|213052975|ref|ZP_03345853.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425440|ref|ZP_03358190.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213646152|ref|ZP_03376205.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213850431|ref|ZP_03381329.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289825794|ref|ZP_06544962.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 629

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|25511900|pir||AB0901 ATP-dependent RNA helicase (dead-box protein) [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16504348|emb|CAD07800.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29139168|gb|AAO70736.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 646

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 24  TFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLN 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 84  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 140

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 141 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 200

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 201 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 258 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 318 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 377

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 378 ERTMKLTIPEVELPNAEL 395


>gi|332306494|ref|YP_004434345.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173823|gb|AEE23077.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 436

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 165/436 (37%), Positives = 249/436 (57%), Gaps = 21/436 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLSP ++ AV   GY  P+PIQ + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFADLGLSPAILSAVTAKGYTDPSPIQAQAIPAILEGKDIMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +G+  R    R L+L PTRELAAQV  +   YGK+  L  A++ GG+    Q  KL
Sbjct: 61  ELLNRGKHARGNQARALVLTPTRELAAQVGASVVDYGKDLPLRSAVVFGGVGINPQMIKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD +N+  +  +++E+LV+DEADRMLDMGFI  I+ +  L+P  RQ
Sbjct: 121 RKGVDILVATPGRLLDLYNQNAVRFDDLEVLVLDEADRMLDMGFIHDIKKVLKLLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +D+++ +++  + NP  + V+ P++T E +E                    +
Sbjct: 181 NLLFSATFSDDIRALAKGLVNNPVEVSVSPPNTTVEAVEQSICPVDKNQKTPA---LIRM 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  ++F   K     +   LE +G +  AIHGN  Q +R K L+ FK G ++ +
Sbjct: 238 IKDNDWQQVLVFSRTKHGANRIAKQLEARGITSAAIHGNKSQGARTKALAEFKSGKVRAL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+D+PN AE+Y+HRIGRTGRAG  G+A +LV  ++   +  
Sbjct: 298 VATDIAARGLDISQLPQVVNYDLPNVAEDYVHRIGRTGRAGASGQAISLVTADEFSLLAD 357

Query: 360 IEKLIEKKVDW--LNGDLSSLNPPLEKID------------IAQHNHARKNNPIPQKSTG 405
           IE+  ++ +    + G     + P  ++D              QH   +++    +    
Sbjct: 358 IERFTKQIIPRKGIEGFAPVHDLPESRLDNRPIKPKKPKKPRVQHRDGQRSGDNARGHYS 417

Query: 406 FDRRK---KNYSSQKS 418
             RR    KN S ++S
Sbjct: 418 GKRRGNGPKNASPRRS 433


>gi|328470214|gb|EGF41125.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus 10329]
          Length = 522

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 180/467 (38%), Positives = 262/467 (56%), Gaps = 22/467 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ K IP +L+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G   R    R LIL PTRELAAQV +N   YG++  L+ A++ GG+    Q  +L
Sbjct: 61  ERLSNGPRVRANQVRALILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMLRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +N+  +  + +E+LV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ +++  + NP  I VN  +STA T+E           KK A +   L
Sbjct: 181 NLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADV---KKKAPMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  ++F   K     L   L +Q     AIHGN  Q +R K L++FK G I+++
Sbjct: 238 IKDGDWKQVLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV   +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEIGKAISLVCALEASELFA 357

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKIDIA--------------QHNHARKNNPIPQKS 403
           IE+LI++ +    L G   +   P  K+D                  N A +N P  +K 
Sbjct: 358 IERLIQEVLPRKELEGFAPTNVVPESKLDTRPIKPKKPKKPKKPKAPNAAGENAPATEKK 417

Query: 404 T--GFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
              G ++ K+ ++   +      ++  +   +  +E+   +     +
Sbjct: 418 AGNGANKPKRRFNGGNNGNKNSTNQGGAGKPKGNREDQGRAHSKPDD 464


>gi|269962284|ref|ZP_06176636.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
 gi|269832987|gb|EEZ87094.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
          Length = 437

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 138/430 (32%), Positives = 211/430 (49%), Gaps = 11/430 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L P+V+  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADLDLKPQVIEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 E    +   PR +I+ PTRELA Q+ ++ E    +  L  AL  GG  ++ Q  
Sbjct: 70  HLLTTPEHEGRKPTQPRAIIMAPTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G D+LI T GRI+D + +    +NNI+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           ++ L    + T   +     F       E        +T        +   ++    L Q
Sbjct: 190 KERLNMLFSATLSYRVQELAFEHMHN-PEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     I+F N K    ++   L   G  V  + G++ Q+ R KIL  F  G + 
Sbjct: 249 TLIEEEWPDRAIVFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGEVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   ++   ++
Sbjct: 309 LLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAINL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
             IE+ IE  +   + D    +  L  PL     A     R+ N    +S     + +  
Sbjct: 369 PPIEEYIEHAIPVSDYDASALIQDLPAPLRM--RAPRTQQRRTNTGGTRSGNRKPQGRRP 426

Query: 414 SSQKSHIPLK 423
              +   P +
Sbjct: 427 RQPRQSAPKQ 436


>gi|269217166|ref|ZP_06161020.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC
           700122]
 gi|269129303|gb|EEZ60388.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC
           700122]
          Length = 721

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 147/376 (39%), Positives = 213/376 (56%), Gaps = 4/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGLS K + AV+D GY +PTP+Q K IP+VL+  D+   A+TGTGKTA+F LP L 
Sbjct: 25  TFNDLGLSEKALSAVVDLGYSEPTPVQEKAIPVVLEGRDLIAAAKTGTGKTAAFSLPTLD 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L         P  +I+ PTRELA Q+AD      +  N +  +L+GG+ +  Q KKL  
Sbjct: 85  QLRYRADD-EGPLMVIVTPTRELAQQIADTCAPIARRTNHSTVVLLGGVGYGPQIKKLRA 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GAD++I TPGR+LD   +G   + N+E LV+DEADRMLDMGF P +  I   +P  RQTL
Sbjct: 144 GADIIIATPGRLLDLMRQGAADLGNVEKLVLDEADRMLDMGFWPQVSEIVDAIPAERQTL 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+     KV  + L++P+ I     +   +  +           +    L      
Sbjct: 204 LFSATIDRSQDKVMFSLLKDPEII---EIAHRGDVADLIDQYVIKTDRRLKPALLNSFVR 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      I+F   K    N    L K G +  AIH +  Q  R + L NF+EG   ++VA
Sbjct: 261 ERGGFRVIVFTRTKGGADNCTKRLRKIGIATEAIHADRSQAQRARALDNFREGKTHVLVA 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ +RG+D+P+V +V N+D+P   E+Y+HRIGRTGRAG  G A + V  +    + +I+
Sbjct: 321 TDVLSRGIDVPEVDYVINYDLPMMPEDYVHRIGRTGRAGARGYAVSFVTPDTRNLLKSIQ 380

Query: 362 KLIEKKVDWLNGDLSS 377
           K I++ ++ L+  +S 
Sbjct: 381 KFIDQTIEVLDFAVSD 396


>gi|209758404|gb|ACI77514.1| inducible ATP-independent RNA helicase [Escherichia coli]
          Length = 646

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 24  TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 84  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 140

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 141 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 200

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 201 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVATRPDISQSYWTVWGMRKNEA---LVRFL 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 258 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 318 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 377

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 378 ERTMKLTIPEVELPNAEL 395


>gi|37676020|ref|NP_936416.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|326424408|ref|NP_763420.2| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|37200560|dbj|BAC96386.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|319999798|gb|AAO08410.2| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
          Length = 447

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 130/422 (30%), Positives = 199/422 (47%), Gaps = 11/422 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + K T IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 5   LQFKDLGLDNRLLKNLKHLDFQKATKIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 64

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      R PR +IL PTRELA QV           +    L++GG  F  Q K L
Sbjct: 65  HKSLKTKALSARDPRGVILAPTRELAKQVYGELRTMLGGLSYDATLIVGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH     + +  +E LV+DEADRMLD+GF P ++ I +     R+
Sbjct: 125 ARYPKFIVATPGRLADHLEHKSVFLEGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRR 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +              +    S  E  +         +      L + +
Sbjct: 185 QTLMFSATLDHAEVNDIASEMLDAPKRIAIGVSNEEHKDITQRFYLCDHLDHKEALLERV 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+   +  IIF   + +   L   L ++     A+ G+++Q  R  I+S F+    +++
Sbjct: 245 LSEAEYRQVIIFTATRSDTDRLTEKLNEKKLKAIALSGSLNQNQRNTIMSQFERTVFKIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDI  V HV NFD+P   E Y+HRIGRTGRAG  G A +LV  +D      
Sbjct: 305 VTTDVASRGLDISTVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAISLVGPKDWDSFKR 364

Query: 360 IEKLIEKKV-----DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK---STGFDRRKK 411
           +E  +++ +     D L G    + P   K D      A      PQK   S    +R K
Sbjct: 365 VEAYLQQDIAFSEFDDLKGKFKGIKP--RKPDFRAKKQATTKKARPQKKAVSKAPAKRDK 422

Query: 412 NY 413
           ++
Sbjct: 423 SF 424


>gi|167628080|ref|YP_001678580.1| DEAD/DEAH box helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|241668618|ref|ZP_04756196.1| DEAD-box subfamily ATP-dependent helicase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254877152|ref|ZP_05249862.1| ATP-dependent RNA helicase deaD [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|167598081|gb|ABZ88079.1| DEAD-box subfamily ATP-dependent helicase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|254843173|gb|EET21587.1| ATP-dependent RNA helicase deaD [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 581

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 148/454 (32%), Positives = 247/454 (54%), Gaps = 15/454 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGL+  ++  V+  GY  PTPIQ   IP +L   DV G AQTGTGKTA+F LP++ 
Sbjct: 8   DFSQLGLNQDIIDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++    R R P+ L+L PTRELA QVA+ F+ + KN        I  G  + +Q + L+
Sbjct: 68  NMDLES-RDRAPQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQIRALK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ T GR++DH  +G L ++N+  LV+DEAD ML MGFI  ++ + S V    Q 
Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHVSDECQR 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++  + + +L+NP +I+V   + TA T+   F+                ++
Sbjct: 187 LLFSATIPTDIADIIQEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLEVE 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +   IIF   K + + +  +L+  G+ V AI+G++ Q  R  I+  F+     ++V
Sbjct: 247 ETDGV---IIFVKTKTSTIEVADNLKALGYRVAAINGDMQQSQREYIVDQFRSAKSDVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+  + HV N+D+PN ++ Y+HRIGRTGRAGR G + +LV  ++++ +  +
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDSDTYVHRIGRTGRAGREGISISLVPLKEMRFLRTL 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKSTGFDRRKKNYSSQKSH 419
           E+     +  +        P  + +  ++ +H + +      K+   D  K+  +S +  
Sbjct: 364 ERFTGSPMQEV------FMPSAKDLAQSRIDHFKTRIASALDKNKSLDNYKEIITSIRDE 417

Query: 420 IPLKESE---KISKLQQDIQENDADSLGFRGNMP 450
           + L   E    ++ L Q  +      +  R + P
Sbjct: 418 LELDSDELLAVLTLLAQGKKSFFPREIQARDDRP 451


>gi|301119991|ref|XP_002907723.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262106235|gb|EEY64287.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 479

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 139/433 (32%), Positives = 215/433 (49%), Gaps = 7/433 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+   +  A+   G+  P+ IQ + IP  L   D+ G+A+TG+GKT +FV+P+L 
Sbjct: 29  SFAELGVDSAICEAIEAVGWSAPSKIQQQAIPHGLAGKDIIGLAETGSGKTGAFVIPILQ 88

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     R+     L+L PTRELA Q+ + FE  G +  L  A ++GGI    Q   L R
Sbjct: 89  SLLHNPQRLYA---LVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALAR 145

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIE-ILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V+I TPGR++DH    K         LV+DEADRML M F   I  I  L+P  R T
Sbjct: 146 KPHVVIATPGRLVDHLENTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIVQLMPADRNT 205

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT +++K+    L++P ++     +    T E          +K        + 
Sbjct: 206 YLFSATMTSKVRKLQRASLKDPVKV---EITHKFATPETLKQHYLFIPAKFKDCYLAYVL 262

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ +IF +       +   L   GF    +HG + Q SR+  L+ FK     ++V
Sbjct: 263 NEVAGQSVLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKARNVLV 322

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A+RGLDIP V  V N+D+P   ++YIHR+GRT RAGR G A + V + D++    I
Sbjct: 323 CTDVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVTQYDVELYQRI 382

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E L+  K+D  + +  ++    E+++ AQ     +        TG  R +      +   
Sbjct: 383 EHLLGTKLDAYSCEEETVLVITERVNEAQRIATIEMKEAAANGTGIKRGRYARDDNEGDD 442

Query: 421 PLKESEKISKLQQ 433
                +K     +
Sbjct: 443 EEGGEKKYKSAAR 455


>gi|86358753|ref|YP_470645.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
 gi|86282855|gb|ABC91918.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
          Length = 560

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 147/375 (39%), Positives = 225/375 (60%), Gaps = 4/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LG+S  +V  +   G   PTPIQ + IPL+L+  D+ G+AQTGTGKTA+F LP++ 
Sbjct: 24  NFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 83

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L     R      RTLIL PTREL  Q+A+N +K+ +   L + +++GG+    Q  +L
Sbjct: 84  KLLADERRPDNRTTRTLILAPTRELVNQIAENLKKFIRKSPLRINVVVGGVSINKQQLQL 143

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G D+L+ TPGR+LD  NR  + +  +  LV+DEAD+MLD+GF+  ++ I  LVP  RQ
Sbjct: 144 EKGTDILVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDLGFVHDLRKIAKLVPKKRQ 203

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   +  ++  +L +P ++EV  P   A+ +E        +  K    L +  
Sbjct: 204 TMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVGGKNDKTE--LLRKS 261

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++     I+F   K     L   L+  G+SV +IHGN  Q  R + L  F++G+I+ +
Sbjct: 262 LTENPDGRAIVFLRTKHGAEKLMKHLDNIGYSVASIHGNKSQGQRERALKAFRDGSIKTL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DIP V HV+N+D+P   + Y+HRIGRT RAGR G A    A ++ K +  
Sbjct: 322 IATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRD 381

Query: 360 IEKLIEKKVDWLNGD 374
           IE+L+   +   +G+
Sbjct: 382 IERLMGIDITVASGE 396


>gi|326801270|ref|YP_004319089.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21]
 gi|326552034|gb|ADZ80419.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21]
          Length = 442

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 154/411 (37%), Positives = 232/411 (56%), Gaps = 6/411 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D   + +++ A+ DA Y +PT IQ K I  +L   DV GIAQTGTGKTA++VLP++ 
Sbjct: 4   SFEDFKFNRQILNAIADAEYKEPTAIQQKAITPILAGQDVMGIAQTGTGKTAAYVLPIIM 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +   PR LIL PTRELA Q+ +N + + K  +L   +L GG+  + Q + LE+
Sbjct: 64  KLKYA--QGSDPRALILSPTRELAMQIEENIQLFAKYTDLRTVVLYGGLGPKQQIEALEK 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+L+ TPGR LD +    +    I++LV+DEAD+M+DMGFI  I  I  ++P  RQ L
Sbjct: 122 GVDILVATPGRFLDLYLAEHINTKQIKLLVMDEADKMMDMGFIGKIHRILEVIPRKRQNL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM++ + K++ +FL  P  +EV+  ++ A T+           +K   L   L   
Sbjct: 182 LFSATMSELVHKIAGDFLAFPTIVEVSPQATPANTVSQQLYFVPNTKTKINLLQYLLKND 241

Query: 242 QDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +D  +  I        + +    S +     V  IH N  Q +R+  ++ FKEG+++++V
Sbjct: 242 EDFHRLIIFSKTKTIADNIYHFLSRKYGEDEVRVIHANKGQNTRINSINAFKEGSVRILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HV NFD+P   E+Y+HRIGRTGRA + G A ++    +  +I  I
Sbjct: 302 ATDVAARGLDVSDVSHVINFDIPIVIEDYVHRIGRTGRATKSGIAISMCTPAEAYYITKI 361

Query: 361 EKLIEKKVD--WLNGD-LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           EKLI +++    L  + L    P  EK   A+    +K    P+    F  
Sbjct: 362 EKLIRQQIPVSELPAEVLIEKTPFEEKQAQAREIDMQKRKENPEFKGAFHE 412


>gi|50554139|ref|XP_504478.1| YALI0E27715p [Yarrowia lipolytica]
 gi|74659776|sp|Q6C4D4|DBP2_YARLI RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49650347|emb|CAG80081.1| YALI0E27715p [Yarrowia lipolytica]
          Length = 552

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 129/380 (33%), Positives = 212/380 (55%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F + G  P V+  V   G+ KPT IQ +  P+ L   DV GIA TG+GKT S+ LP + 
Sbjct: 117 NFDEAGFPPYVLKEVKQQGFEKPTAIQCQGWPMALTGRDVIGIASTGSGKTLSYCLPAIV 176

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 177 HINAQPMLSHGDGPIVLVLAPTRELAVQIQQECSKFGKSSKIRNTCVYGGVPRGQQIRDL 236

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +++I TPGR+LD    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 237 ARGVEIVIATPGRLLDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 296

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+Q+++ ++L++  ++ + +   +A       V    +Y K+  L++ L 
Sbjct: 297 TLMWSATWPKEVQRLAHDYLKDQIQVNIGSLELSASHNITQVVEVCTEYEKRDRLVKHLE 356

Query: 240 QSQDTMKNGIIFCNQKKNV-VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +  ++  +     K V  ++   L + G+   AIHG+  Q+ R  +L+ F++G   +
Sbjct: 357 TVMENKESKCLIFTGTKRVADDITKFLRQDGWPALAIHGDKQQQERDWVLNEFRQGKSPI 416

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+  +  V N+D P+ +E+Y+HRIGRTGRAG  G A+T   +++ K   
Sbjct: 417 MVATDVASRGIDVKGINFVINYDYPSNSEDYVHRIGRTGRAGTKGTAYTYFTEDNRKQAR 476

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    ++  L  +
Sbjct: 477 DLLVILREAKQHIDPKLEEM 496


>gi|332161012|ref|YP_004297589.1| ATP-dependent RNA helicase RhlE [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604884|emb|CBY26382.1| ATP-dependent RNA helicase RhlE [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665242|gb|ADZ41886.1| ATP-dependent RNA helicase RhlE [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 451

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 164/449 (36%), Positives = 250/449 (55%), Gaps = 8/449 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY+ PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L + +  +   R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    Q  
Sbjct: 61  QLLSQDQQPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I            ++      
Sbjct: 181 RQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKREL---LS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G I+
Sbjct: 238 QMIGEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE+L+++++  +  D    +P ++   I      R              R +N  +  
Sbjct: 358 RDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGRGAQRPGMGRGSSAGRPQNGGAAA 417

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFR 446
                + S    + Q D Q   A      
Sbjct: 418 GRGDSRTSR--PRSQADGQRRPAGPSSRG 444


>gi|294142501|ref|YP_003558479.1| ATP-dependent RNA helicase DeaD [Shewanella violacea DSS12]
 gi|293328970|dbj|BAJ03701.1| ATP-dependent RNA helicase DeaD [Shewanella violacea DSS12]
          Length = 617

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 142/384 (36%), Positives = 226/384 (58%), Gaps = 9/384 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ ++ D GY KPTPIQ  +I  ++   D+ G AQTGTGKT +F LP+L+
Sbjct: 7   TFRELGLSEPLLRSLDDLGYEKPTPIQAASIIPLMAGKDILGQAQTGTGKTGAFALPLLS 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     +  P+ L+L PTRELA QVA+ F  Y K+      L I  G     Q   L 
Sbjct: 67  TIDSS---LNAPQILVLAPTRELAVQVAEAFASYAKHMKGLHVLPIYGGQSMHQQLNALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG L +++++ +V+DEAD ML MGFI  I+ I    P  RQ 
Sbjct: 124 RGPQVIVGTPGRVMDHMRRGTLKLDSLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQL 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +++++V+  +L  P  +++   ++T ETIE  FV        +  +    ++
Sbjct: 184 ALFSATMPEQIKRVANKYLTEPVHVKIAATTATVETIEQRFVQVSQHNKLEALVRVLEVE 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S + +   IIF   + + V L   LE +G++   +HG+++Q++R + +   K G++ +++
Sbjct: 244 STEGI---IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGSLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +GHV N+D+P   E Y+HRIGRT RAGR G A   V   +++ +  I
Sbjct: 301 ATDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTDRAGRSGMAILFVTHREMRMLRTI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E+  + ++     D+ S     E+
Sbjct: 361 ERATKSRIS--PMDVPSPESVTER 382


>gi|206560771|ref|YP_002231536.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
           J2315]
 gi|198036813|emb|CAR52713.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
           J2315]
          Length = 494

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 161/373 (43%), Positives = 223/373 (59%), Gaps = 8/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+  ++ A+ + GY  PTPIQ + IP+VL   DV G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q+
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQS 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L+NP+ IEV   +ST   +            +   +  
Sbjct: 192 ERQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                   +K  I+FCN K     L  +LE+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 L---RDRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKKVD 369
           +  IEKLI++ ++
Sbjct: 369 LADIEKLIKRPLE 381


>gi|195552710|ref|XP_002076525.1| GD17585 [Drosophila simulans]
 gi|194202136|gb|EDX15712.1| GD17585 [Drosophila simulans]
          Length = 786

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 138/411 (33%), Positives = 218/411 (53%), Gaps = 4/411 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   G   +++ AV  A Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ PML 
Sbjct: 267 SFGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLM 326

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   +       P  LIL PTREL+ Q+ +  +K+GK YNL V    GG     Q+K L
Sbjct: 327 HVMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKAL 386

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+GA++++ TPGR++D        +  +  LV+DEADRM  MGF P +++I + V   RQ
Sbjct: 387 EQGAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQ 446

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT    +++++ + L +P RI     +   + I            K   LL  L+
Sbjct: 447 CLMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLV 506

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +      + +IF  +K +   + ++L  + ++   +HG++DQ  R K+++ FK     ++
Sbjct: 507 KFLSEG-SVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDIL 565

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + +V N+D     E + HRIGRTGRAG  G AFTLV  +D +    
Sbjct: 566 VATDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAFTLVTDKDKEFAGH 625

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST-GFDRR 409
           + + +E     +  DL  L         ++    +   P    +  G+  R
Sbjct: 626 LVRNLEGADQLVPDDLMELAMKSSWFRSSRFKQGKGKRPTNTHTGLGYRER 676


>gi|134299771|ref|YP_001113267.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134052471|gb|ABO50442.1| ATP-dependent RNA helicase DbpA [Desulfotomaculum reducens MI-1]
          Length = 532

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 155/440 (35%), Positives = 242/440 (55%), Gaps = 11/440 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L  ++V  + + G+ +PTPIQ   +P VL  +D+ G AQTGTGKTA+F +PM+  
Sbjct: 10  FGNLELDRRIVDGLKEMGFEEPTPIQQLAVPQVLAGYDMIGQAQTGTGKTAAFSIPMIER 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +  V+     I+ PTRELA QVA+   K G+   + V  + GG   E Q + L  G
Sbjct: 70  LNPRKREVQTI---IITPTRELAIQVAEEISKIGRFSRIKVLPIYGGQSIERQIRSLRLG 126

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+LDH  R  L ++ ++++++DEAD MLDMGFI  I+ I    P  RQTLL
Sbjct: 127 VQVVVGTPGRLLDHLRRQTLKVDQVDMVILDEADEMLDMGFIEDIEEIIRHTPAERQTLL 186

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E+ ++++ ++ +PK + V+  + T   IE      Y    K        +   
Sbjct: 187 FSATMPQEIIRLAQQYMTDPKYVTVSKTNLTVPQIEQ---VFYEAPEKNKLEALCRILDI 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +  GI+FC  K+ V  L   L+ +GF+  A+HG++ Q+ R  ++  F+   ++L+VA+
Sbjct: 244 SDISQGILFCRTKRGVDELVAGLQARGFAAAALHGDLSQQQRNTVMRQFRSSEVELLVAT 303

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV N+D+P   E Y+HRIGRTGRAGR G A T+++  + + +  IE 
Sbjct: 304 DVAARGLDIEGVSHVINYDIPQDPEFYVHRIGRTGRAGRSGVAITIISPREYRQLRQIEN 363

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPL 422
           + +  +      L S+   +E+    +    R    I +   G+  R    +    + P+
Sbjct: 364 ITKTHIKR--QKLPSIADVVER--QKESIKERLIQIINEGKLGY-YRSVVDALVDEYDPM 418

Query: 423 KESEKISKLQQDIQENDADS 442
             +    KL  D++ N  D 
Sbjct: 419 DIAAAALKLSMDLEPNSEDV 438


>gi|323497774|ref|ZP_08102788.1| ATP-dependent RNA helicase SrmB [Vibrio sinaloensis DSM 21326]
 gi|323317121|gb|EGA70118.1| ATP-dependent RNA helicase SrmB [Vibrio sinaloensis DSM 21326]
          Length = 398

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 126/371 (33%), Positives = 201/371 (54%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA+L L P ++ A+ + GY +PT IQ + IP  L   D+   A TGTGKTA+FVLP L 
Sbjct: 4   NFAELELDPNLLLAIEEMGYDRPTQIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    R   P  + IL PTRELA QVA+      K+  L +  + GG+ ++     L 
Sbjct: 64  YLQDFPRRKPGPARVLILTPTRELAMQVAEQARALAKHTKLNIFTITGGVQYQEHADILG 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  DV++ TPGR++++ N  +     IE L++DEADRMLDMGF P +  ++S   + +QT
Sbjct: 124 KTQDVVVATPGRLMEYINAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSSECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+SAT     ++  + + L++P  I+        + I   +        K         
Sbjct: 184 HLYSATLEGKGVEGFTADLLKDPAEIDAEPSRRERKKIAQWYHRADDMQHKFE---LLKH 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     I+F   ++ +  L   LE        I G + Q  R   ++ F++GT+ ++
Sbjct: 241 IITEQADRTIVFLKTRERLGELRAQLEAAQVPCAWIQGEMPQDRRNNAIARFRDGTVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A +LV   D   +D 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRSADVYLHRIGRTARAGKKGNAVSLVEAHDQPMMDR 360

Query: 360 IEKLIEKKVDW 370
           + + +++ +  
Sbjct: 361 VARYVKEDIKE 371


>gi|156977147|ref|YP_001448053.1| hypothetical protein VIBHAR_05933 [Vibrio harveyi ATCC BAA-1116]
 gi|156528741|gb|ABU73826.1| hypothetical protein VIBHAR_05933 [Vibrio harveyi ATCC BAA-1116]
          Length = 421

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 161/435 (37%), Positives = 252/435 (57%), Gaps = 22/435 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++FADLG+  ++V  +     V PTP+Q K+IP VL+  D+   AQTGTGKTA+F LP++
Sbjct: 7   VNFADLGIEQQLVDTLSGMNIVTPTPVQEKSIPPVLEGKDLLAAAQTGTGKTAAFGLPII 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++ + R   P+ LIL PTRELA QV DN  +Y  N +L +  + GG     Q KKLE
Sbjct: 67  QSVQQKK-RNGAPQALILVPTRELAQQVMDNLTQYAANTDLKIVCVYGGTSIGVQKKKLE 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+LI TPGR+LDH   G +++    ILV+DEADRMLDMGF P +Q I   +P  +QT
Sbjct: 126 EGADILIATPGRLLDHLFNGNVIIAKTGILVLDEADRMLDMGFWPDLQRILRRLPQDKQT 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++ ++   + +P  +EV+  ++TAET+       Y    K+   L   L 
Sbjct: 186 MLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETV---KQMVYPVDKKRKRELLAYLI 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  ++F   K+    L   L+  G    +I+G+  Q +R + L  FK G ++ ++
Sbjct: 243 GSRNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKAGKVRALI 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V NFD+P +AE+Y+HRIGRTGRA + G A +L+++++   + AI
Sbjct: 303 ATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRARKSGLAVSLMSRDEEYLLTAI 362

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           E L+++++  +WL G   SL   +E                P+++ G  R+ ++   +K 
Sbjct: 363 ENLLDQRLPQEWLEGFEPSLIEEVE----------------PERNGGGRRKSRSSEKRKM 406

Query: 419 HIPLKESEKISKLQQ 433
              L   +   K ++
Sbjct: 407 KAKLAIHKNRGKNRK 421


>gi|154271069|ref|XP_001536388.1| hypothetical protein HCAG_08709 [Ajellomyces capsulatus NAm1]
 gi|160380608|sp|A6RGE3|DBP2_AJECN RecName: Full=ATP-dependent RNA helicase DBP2
 gi|150409611|gb|EDN05055.1| hypothetical protein HCAG_08709 [Ajellomyces capsulatus NAm1]
          Length = 542

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 128/381 (33%), Positives = 211/381 (55%), Gaps = 4/381 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ +PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 126 TFDEAGFPQYVMSEVKAQGFARPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 185

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 186 HINAQPLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQIRDL 245

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 246 TRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 305

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ-- 237
           T ++SAT   ++++++++FL +  ++ + +   +A       V   +++ K+  + +   
Sbjct: 306 TCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAKHLD 365

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     +IF   K+   ++   L + G+   +IHG+  Q  R  +L+ FK G   
Sbjct: 366 RIMEANKHSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSP 425

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A TL   ++ K  
Sbjct: 426 IMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQA 485

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             +  ++ +    ++  L+ +
Sbjct: 486 RDLVAILSESKQQIDPRLAEM 506


>gi|195326619|ref|XP_002030023.1| GM24798 [Drosophila sechellia]
 gi|194118966|gb|EDW41009.1| GM24798 [Drosophila sechellia]
          Length = 786

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 138/411 (33%), Positives = 218/411 (53%), Gaps = 4/411 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   G   +++ AV  A Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ PML 
Sbjct: 267 SFGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLM 326

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   +       P  LIL PTREL+ Q+ +  +K+GK YNL V    GG     Q+K L
Sbjct: 327 HVMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKAL 386

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+GA++++ TPGR++D        +  +  LV+DEADRM  MGF P +++I + V   RQ
Sbjct: 387 EQGAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQ 446

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT    +++++ + L +P RI     +   + I            K   LL  L+
Sbjct: 447 CLMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLV 506

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +      + +IF  +K +   + ++L  + ++   +HG++DQ  R K+++ FK     ++
Sbjct: 507 KFLSEG-SVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDIL 565

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + +V N+D     E + HRIGRTGRAG  G AFTLV  +D +    
Sbjct: 566 VATDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAFTLVTDKDKEFAGH 625

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST-GFDRR 409
           + + +E     +  DL  L         ++    +   P    +  G+  R
Sbjct: 626 LVRNLEGADQVVPDDLMELAMKSSWFRSSRFKQGKGKRPTNTHTGLGYRER 676


>gi|160871634|ref|ZP_02061766.1| dead/deah box helicase [Rickettsiella grylli]
 gi|159120433|gb|EDP45771.1| dead/deah box helicase [Rickettsiella grylli]
          Length = 421

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/425 (31%), Positives = 211/425 (49%), Gaps = 21/425 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +   + +++  +   GY   TPIQIK IP +LQ  DV G+AQTGTGKTA++ LP+L
Sbjct: 1   MNFTEFNFNTQILSGIQTQGYRTATPIQIKAIPAILQGRDVVGLAQTGTGKTAAYALPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI--GGIPFEAQNKK 118
             L +G       R LIL PTR+LA Q+      +G+  +L  A +              
Sbjct: 61  QQLTEGP--PGQLRALILSPTRDLADQICVAMNHFGRQTHLRCATIYGGKINYTRQYQLL 118

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 ++ C    +     +    +  ++ LV+DEAD + D GF   I +I   +P  R
Sbjct: 119 TGGVDIIVACPGRLLDLLQGKKNNFLQQVKHLVLDEADHLFDHGFRDAIYHILKHLPPRR 178

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSATM+ +++ + +  L  P RI++       +         +         L + 
Sbjct: 179 QNLLFSATMSADIRLLIDKVLHRPVRIQIGE----PKPAVTITQTLFPVSETLKVNLLET 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +    ++ + IIF   K     L   L   G+   +  GN+ Q  R   L  F++G ++ 
Sbjct: 235 ILQNHSIHSAIIFTRTKHRAQCLAEHLRDLGYKATSFQGNLSQSRRKTALGKFRQGELKF 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV NFD+PN A  Y HRIGRTGRA + G AF+L+ K D + I 
Sbjct: 295 LVATDVAARGIDIDHLSHVINFDMPNTAIEYTHRIGRTGRADKLGMAFSLITKNDRRKIQ 354

Query: 359 AIEKLIEKKVDW-LNGDL---SSLNPPLEKIDIAQHNH---------ARKNNPIPQKSTG 405
           +IE L +K+++  +  +    + +NP +E ++  +            +RK    P+ ST 
Sbjct: 355 SIEHLQKKRLEECIIAEFDYHAKINPSMEPLNAYRRKPLSYPHSPSTSRKKIASPRHSTL 414

Query: 406 FDRRK 410
             ++K
Sbjct: 415 RSKKK 419


>gi|153800715|ref|ZP_01955301.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
 gi|227812335|ref|YP_002812345.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
 gi|229522328|ref|ZP_04411744.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|298499563|ref|ZP_07009369.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757]
 gi|124123690|gb|EAY42433.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
 gi|227011477|gb|ACP07688.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
 gi|229340313|gb|EEO05319.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|297541544|gb|EFH77595.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757]
          Length = 422

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 148/409 (36%), Positives = 231/409 (56%), Gaps = 11/409 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGL  +++  + + G V PTPIQ + IP VLQ  DV   AQTGTGKTA+F LP++
Sbjct: 6   ITFSQLGLDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65

Query: 61  TILEKGRARVRMPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               +   +       I      PTRELA QV D+ + Y K   L +  + GG   + Q 
Sbjct: 66  QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G D+LI TPGR+LDH +   L +  +E+LV+DEADRMLDMGF+P +Q +   +  
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSAT   +++ V+   +++P  ++V   +STAET+       Y    K+   L 
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETV---QQMVYPVDKKRKRELL 242

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L      +  ++F   ++    L   L+  G    +I+G+  Q +R K L +FK G +
Sbjct: 243 SYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L++ ++   
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAISLLSHDEQPQ 362

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           ++AIE+L+  ++  +WL G   S  P + + +  + +  R +     K+
Sbjct: 363 LEAIERLLNTRLPQEWLKGFEPS--PVVHEENSPRRSAGRSSEKRKLKA 409


>gi|325959925|ref|YP_004291391.1| DEAD/DEAH box helicase domain-containing protein [Methanobacterium
           sp. AL-21]
 gi|325331357|gb|ADZ10419.1| DEAD/DEAH box helicase domain protein [Methanobacterium sp. AL-21]
          Length = 529

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 143/370 (38%), Positives = 224/370 (60%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL +S ++  AV D G+ + TPIQ   IP VL+  DV G AQTGTGKTA+F +P+L
Sbjct: 4   LRFKDLNISSEIQRAVEDMGFEEATPIQSLAIPHVLEGKDVTGQAQTGTGKTAAFGIPIL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++     ++     IL PTRELA QVA+  +K  K       L +  G P E Q K L
Sbjct: 64  ETVDPSNRDLQAV---ILCPTRELAIQVAEEMKKLSKYMRKIGILPVYGGQPIERQIKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G  ++I TPGR++DH  RG + M ++++L++DEAD MLDMGF   I+ +   +P  RQ
Sbjct: 121 KKGVQIIIGTPGRVMDHMRRGTIDMGSVKMLILDEADEMLDMGFREDIEFVLDYIPDERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM+ ++  ++  + ++P+ ++V     T   I       +    K    +   L
Sbjct: 181 ILLFSATMSPDILYITRRYQESPEFLKVVPKELTVPEI---KQIYFEVKEKMKLDVLSRL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  K  ++FCN K+ V  L + L+ +G++   +HG++ QR R  ++S F+ G I+++
Sbjct: 238 LDINDFKLSLVFCNTKRRVDKLVNHLQIRGYAADGLHGDMSQRQRDNVMSKFRSGNIEIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V  VFNFDVPN  E Y+HRIGRTGRAG+ G A+T V+ +++  +  
Sbjct: 298 VATDVAARGIDVDNVEAVFNFDVPNDDEYYVHRIGRTGRAGKTGIAYTFVSGKEVYQLRD 357

Query: 360 IEKLIEKKVD 369
           I +  + K++
Sbjct: 358 IMRYTKTKIE 367


>gi|320353120|ref|YP_004194459.1| DEAD/DEAH box helicase domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320121622|gb|ADW17168.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 428

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 150/426 (35%), Positives = 229/426 (53%), Gaps = 12/426 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D   +  +  A+   G+  PTPIQ + IP VL+R D+ G+AQTGTGKTA+F+LP +
Sbjct: 1   MSFTDFHFNEHITHAISHCGFTAPTPIQQQAIPSVLERRDLLGLAQTGTGKTAAFILPTV 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   R +    R LI+ PTRELA Q+ D      +N  L    + GG+  +AQ  KL 
Sbjct: 61  QHLM--RTQAHHVRALIIAPTRELAEQINDFTRAIIRNTRLKSIAVYGGVSKQAQITKLR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+++  PGR+LD  N   + ++ ++ L++DEAD M D GF+P I+ I   +P  RQ+
Sbjct: 119 GGVDIVVACPGRLLDLLNDKAVDLSRVDTLILDEADHMFDKGFLPDIRRILRRLPAERQS 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSATM DE++ ++E+ L +P  +++N   S        +     Q +     L +   
Sbjct: 179 LVFSATMPDEIRHLAEDILTDPVTVQINPTRSVQSISHRLYAVEQEQKTDLLLQLLKDEA 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF   K    NL   L + GF   ++ GN+ Q  R + L  FK G   ++V
Sbjct: 239 M----ATTLIFTRTKHKAKNLAQKLAQSGFKATSLQGNLSQNRRQQALDGFKTGAFTILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+D+P+ AE YIHR GRTGRA R G+A T   +ED + I  I
Sbjct: 295 ATDIAARGIDVNGISHVINYDMPDTAEAYIHRTGRTGRAARTGEALTFATREDSRMIRLI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK-STGFDRRKKNYSSQKSH 419
           E+ I+ +++  +GD++ L      +   + +  +   P  +K S    R +    S    
Sbjct: 355 ERSIDGRMN--HGDVAELPAVRSAVPSVRSHAGK---PAGKKISVTKSRPEAKGESAPKA 409

Query: 420 IPLKES 425
            P K S
Sbjct: 410 SPRKRS 415


>gi|256028357|ref|ZP_05442191.1| ATP-dependent RNA helicase [Fusobacterium sp. D11]
 gi|289766283|ref|ZP_06525661.1| ATP-dependent RNA helicase [Fusobacterium sp. D11]
 gi|289717838|gb|EFD81850.1| ATP-dependent RNA helicase [Fusobacterium sp. D11]
          Length = 528

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 135/368 (36%), Positives = 210/368 (57%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F DLGLS KV+  +   GY  PTPIQ  TIP +L+   D+ G AQTGTGKTA+F LP++
Sbjct: 9   EFRDLGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E     +   + ++L PTRELA QVA+       +  + V  + GG   + Q K ++
Sbjct: 69  ENFEN----LEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR++D   R  L +N+++  ++DEAD ML+MGFI  I+ I +     ++ 
Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFIEDIEKILTFTNEDKRM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM +E+ KV++N ++  + + V +   T +  E      +    +        + 
Sbjct: 185 LFFSATMPEEIMKVAKNHMKEYEVLAVKSRELTTDLTEQ---IYFEVNERDKFEALCRII 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  GIIFC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I ++V
Sbjct: 242 DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T +  ++ + +  I
Sbjct: 302 ATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 361

Query: 361 EKLIEKKV 368
           +K ++K++
Sbjct: 362 QKAVKKEI 369


>gi|260771156|ref|ZP_05880083.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii CIP 102972]
 gi|260613753|gb|EEX38945.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii CIP 102972]
 gi|315179238|gb|ADT86152.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii NCTC 11218]
          Length = 414

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 121/371 (32%), Positives = 198/371 (53%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L P ++ A+ + G+ +PT +Q + IP  L   DV   A TGTGKTA+FV+P L 
Sbjct: 4   TFADLELDPNLLEAIEEMGFERPTQVQAEAIPHALDGRDVLASAPTGTGKTAAFVIPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    +   P  + IL PTRELA Q+ +   +  K   L +  + GG+ ++     L 
Sbjct: 64  FLQDFPRKKAGPARILILTPTRELAMQITEQARELAKYTKLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L++    +     IE L++DEADRMLDMGF P +  +++   + +QT
Sbjct: 124 TTQDIVVATPGRLLEYIEAERFDCRAIEWLILDEADRMLDMGFGPVVDRLSAECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT     ++  + + L+ P  +    P    + I   +        K         
Sbjct: 184 MLFSATLEGRGVEGFTADLLKEPAEVNAEPPRRERKKISQWYHRADDMNHKLE---LLKA 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  I+F   ++ +  +   LE    +   I G + Q  R   +S F++G++ ++
Sbjct: 241 ILTQQSERAIVFFKTRERLAEVRAVLESAQIACSWIQGEMPQDRRNNAISRFRDGSVNIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D   +D 
Sbjct: 301 LATDVAARGIDVPDVSHVINFDLPRSADVYLHRIGRTARAGKKGIAISLVEAHDQPMMDR 360

Query: 360 IEKLIEKKVDW 370
           + + +++ +  
Sbjct: 361 VARYLKEDIKE 371


>gi|262042721|ref|ZP_06015875.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039946|gb|EEW41063.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 634

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 133/378 (35%), Positives = 222/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 23  TFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLN 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     +R P+ L+L PTRELA QVA+   ++ K+      + +  G  ++ Q + L 
Sbjct: 83  NIDP---ELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALR 139

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 140 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 199

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   Y     +         
Sbjct: 200 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEA---LVRFL 256

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 257 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 316

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 317 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 376

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 377 ERTMKLTIPEVELPNAEL 394


>gi|238896669|ref|YP_002921414.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae NTUH-K2044]
 gi|329997852|ref|ZP_08302922.1| cold-shock DEAD-box protein A [Klebsiella sp. MS 92-3]
 gi|238548996|dbj|BAH65347.1| cold-shock DeaD box ATP-dependent RNA helicase [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|328538887|gb|EGF64951.1| cold-shock DEAD-box protein A [Klebsiella sp. MS 92-3]
          Length = 659

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 133/378 (35%), Positives = 222/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 23  TFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLN 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     +R P+ L+L PTRELA QVA+   ++ K+      + +  G  ++ Q + L 
Sbjct: 83  NIDP---ELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALR 139

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 140 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 199

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   Y     +         
Sbjct: 200 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEA---LVRFL 256

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 257 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 316

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 317 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 376

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 377 ERTMKLTIPEVELPNAEL 394


>gi|237809398|ref|YP_002893838.1| ATP-dependent RNA helicase RhlB [Tolumonas auensis DSM 9187]
 gi|259585616|sp|C4LB49|RHLB_TOLAT RecName: Full=ATP-dependent RNA helicase rhlB
 gi|237501659|gb|ACQ94252.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 425

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 144/419 (34%), Positives = 218/419 (52%), Gaps = 7/419 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+LGL P+V+  V   G+   TPIQ +TIPL+L   ++ G AQTGTGKT +F+    
Sbjct: 9   ITFAELGLEPQVLAGVEAKGFHNCTPIQAETIPLLLTGKNIAGQAQTGTGKTIAFLAGTF 68

Query: 61  TILEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L         R   PR LI+ PTRELA Q+ ++     ++    + L  GG  ++ Q 
Sbjct: 69  NYLLTHSASAERRQNQPRVLIMAPTRELAVQIYNDAVPMSESCGFKMGLAYGGDGYDKQL 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+ G D+LI T GRI+D+  +G + +  I+++V+DEADRM D+GFI  I+ +   +P 
Sbjct: 129 AVLQEGVDLLIGTTGRIIDYLKQGIIDLGAIQVVVLDEADRMFDLGFIKDIRFLFRRMPP 188

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q L    + T  L+     +    +   +                 Y     K  LL 
Sbjct: 189 PAQRLNMLFSATLSLRVQELAYEHMNEPQHIQIEPEQMTGQRIKEELFYPSNEDK-MLLL 247

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L  +D  +  IIF N K    ++   L+  G  V  + G++ Q+ R+KIL +F  G +
Sbjct: 248 LTLMEEDWPEKAIIFANTKHGCEDVHAWLQADGHRVGLLTGDVPQKKRLKILEDFTAGLL 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL IPDV HVFN+D+P+ AE+Y+HRIGRTGRAGR G A +   ++   +
Sbjct: 308 DVLVATDVAARGLHIPDVSHVFNYDLPDDAEDYVHRIGRTGRAGRSGHAISFACEDYAFN 367

Query: 357 IDAIEKLIEKKVDWLNGDLSS-LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +  IE+     +     D S+ L+       + +H      N   ++STG  RR  N S
Sbjct: 368 LPEIEEYTHHPIPVSKYDPSALLDDVTAPKRVVRHRLPVNRNMRDRQSTG-RRRPGNKS 425


>gi|167042639|gb|ABZ07361.1| putative DEAD/DEAH box helicase [uncultured marine crenarchaeote
           HF4000_ANIW133K13]
          Length = 430

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 153/435 (35%), Positives = 238/435 (54%), Gaps = 20/435 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LGL  K++  + DAG+ KP PIQ + IP++L  +DV G A TGTGKTA+F LPM+ 
Sbjct: 3   NFEKLGLEKKILDVLRDAGFTKPFPIQERAIPVLLDGNDVIGQAHTGTGKTAAFALPMIQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +      + +  + +I+ PTRELA Q+    +++ KN  +T A + GG     Q   L +
Sbjct: 63  L----VVKNQGIQGIIMAPTRELALQITSEIKRFAKNTGITTATIYGGQSMGIQLDALRK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             ++++ TPGR++DH  RG + +NN++ +V+DEAD MLDMGFI  I+ I  L P  R T 
Sbjct: 119 KPEIIVATPGRLIDHLKRGTIKLNNVKHVVLDEADIMLDMGFIEDIEFILDLTPEERTTS 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SATM  E+ +++E  +++PKRI V++     E        ++     +      L   
Sbjct: 179 LWSATMPPEIIRLAETNMKSPKRILVDS----DELSCAGIDQSFLIIKDREKSKYLLDFI 234

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   I+FC+ K    ++   L K G SV ++ G++ Q  R   +S F++    ++VA
Sbjct: 235 HGNIGQCIVFCSTKIRTRDVAKLLYKSGESVVSVEGDMSQHRRESSMSKFRKSNANILVA 294

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP V  V N+D+PNR   Y HRIGRT RAG  G+A T+V+   +   + I+
Sbjct: 295 TDVAARGIDIPTVALVINYDIPNRDMVYFHRIGRTARAGAKGRAITMVSYSSVGEWNEIK 354

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           K  +  +  LN     L   ++  D  +   A +          F  R KN+SSQ S   
Sbjct: 355 KQTKVNMTDLN---EKLGIEVKIPDPLKRRVATRQ---------FSHRIKNHSSQFSRRQ 402

Query: 422 LKESEKISKLQQDIQ 436
           +    K  K ++ IQ
Sbjct: 403 MSARNKYDKRKKKIQ 417


>gi|152972086|ref|YP_001337232.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956935|gb|ABR78965.1| cold-shock DeaD box ATP-dependent RNA helicase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 643

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 133/378 (35%), Positives = 222/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     +R P+ L+L PTRELA QVA+   ++ K+      + +  G  ++ Q + L 
Sbjct: 67  NIDP---ELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   Y     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|332286324|ref|YP_004418235.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
 gi|330430277|gb|AEC21611.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
          Length = 477

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 162/428 (37%), Positives = 240/428 (56%), Gaps = 8/428 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL+  ++ AV D GY  PTPIQ + IP V+Q  D+   AQTGTGKTA F LP+L 
Sbjct: 6   TFASLGLAEPLLRAVTDTGYEHPTPIQAQAIPQVMQGGDLLAAAQTGTGKTAGFTLPILH 65

Query: 62  ---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                     +   PR LIL PTREL AQV ++   Y K+ ++   ++ GG+    Q   
Sbjct: 66  RLLQNPAQGRKPGQPRVLILTPTRELTAQVEESVRTYSKHTSIRSMVMFGGVNINPQISA 125

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+L+ TPGR+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ I +L+P  R
Sbjct: 126 LRKPLDILVATPGRLLDHAQQKTVDLSAVEILVLDEADRMLDMGFIRDIRRILALLPKQR 185

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +DE++ +S+  L +P  I V   ++ +E +E   V T   + +        
Sbjct: 186 QNLLFSATFSDEIRALSKGVLNDPIEISVARRNTASELVEQSVVLTEQAHKRDL---LSH 242

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +      ++F   K     L   L K G S  AIHGN  Q +R + L+ FK+G + +
Sbjct: 243 IIRESGWHQVLVFTRTKHGANRLAEKLVKDGLSAAAIHGNKSQAARTRALAGFKDGKVAV 302

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV NF++PN  E+Y+HRIGRTGRAG  G A +LV + +IK + 
Sbjct: 303 LVATDIAARGIDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGSTGSAMSLVDRTEIKLLS 362

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           AIEKLI++ ++     +   +P + K + A    + +  P        +       ++  
Sbjct: 363 AIEKLIKRPIERTT--IEGWSPDMIKAEPAHVRASEEERPRRSNPPRRNGNGHGNGARSG 420

Query: 419 HIPLKESE 426
             P  +  
Sbjct: 421 ARPAAKPR 428


>gi|212545060|ref|XP_002152684.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Penicillium marneffei
           ATCC 18224]
 gi|210065653|gb|EEA19747.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Penicillium marneffei
           ATCC 18224]
          Length = 498

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 127/421 (30%), Positives = 202/421 (47%), Gaps = 12/421 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+F++P L
Sbjct: 45  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFIIPTL 104

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     + +    LIL PTRELA Q +   +  GK+  + V +  GG        +L 
Sbjct: 105 ERINPKSTKTQ---ALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRLN 161

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 162 DTVHIIVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 221

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F     R           T+            K+       L 
Sbjct: 222 MLFSATFPMIVKS----FKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 277

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 278 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLV 337

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 338 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKI 397

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+ +  ++  +     S++  L   D +     R     PQ      R ++ Y  Q +H 
Sbjct: 398 EQELGTEIQPIP---QSIDKKLYVYD-SPDTIPRPIASAPQPDETQQREQQGY-RQGNHH 452

Query: 421 P 421
           P
Sbjct: 453 P 453


>gi|262396801|ref|YP_003288654.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|269966728|ref|ZP_06180805.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|262340395|gb|ACY54189.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|269828651|gb|EEZ82908.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 430

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 154/406 (37%), Positives = 229/406 (56%), Gaps = 11/406 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P+VV A+ + GY K TPIQ K IP+  + HD+   AQTGTGKTA+F LPM+
Sbjct: 1   MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMI 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L               IL PTRELA Q+ADN + Y K  NL+VA + GG    +Q   
Sbjct: 61  QQLLDSNRSASRKTARALILAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQVAA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H  +G + + ++E LV DEADR+LDMGFI  ++ I   V    
Sbjct: 121 LENGVDILVATPGRLEEHIEQGNVSVAHLEFLVFDEADRILDMGFIHAVRKIMLDVDTDP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L  ++++ L+ PKRIEV   ++TA+T+ H       +   +       
Sbjct: 181 QIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAQTVAHVLYPVDQERKTELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   K  ++F N K+    +   L+  G      HG+  Q +R + L  FK G  ++
Sbjct: 239 -IGRKNWKQVLVFVNYKETANEVVKELKLDGIKAVVCHGDRAQSARRRALEEFKSGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V +++   + 
Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNRDEELTVV 357

Query: 359 AIEKLIEKKVDWL------NGDLSSLNPPLEKIDIAQHNHARKNNP 398
            +E LI++++  +           S    L      ++   R+NNP
Sbjct: 358 QVENLIQQRIRRIELAGYEPKQRESYIEKLHSKPAFKNRQGRRNNP 403


>gi|85860692|ref|YP_462894.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
 gi|85723783|gb|ABC78726.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
          Length = 423

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 135/368 (36%), Positives = 218/368 (59%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    L P++   +   GY  PTPIQ+++IP ++Q  DV G+AQTGTGKTA+F LP+L
Sbjct: 1   MSFTQFNLHPQINAGIEALGYKTPTPIQMQSIPAIIQGRDVMGLAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  G  +  M R LI+ PTRELA Q+ ++  +  ++  L    L GG+    Q +KL 
Sbjct: 61  QRLMNGPGK--MVRALIVAPTRELAEQINESINEMSRSTKLKSVALYGGVSKNPQIEKLR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA++++  PGR+LD   +G   ++ IE+ V+DEADRM DMGF+P I+ IT  +P  RQT
Sbjct: 119 QGAEIIVACPGRLLDLVAQGVADLSGIEVFVLDEADRMFDMGFLPEIRKITKQLPEKRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  +++ ++++ L +P  I +      +      +       +     L +   
Sbjct: 179 LLFSATMPADIRSLAKDILHDPLTIRIGNDIPVSTVSHTLYPVEQHLKTALLIKLLKETD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +    ++ ++F   K     +   ++K GF V ++ G++ Q  R   L+ F+EG  ++++
Sbjct: 239 T----ESVLVFARTKHRTTRVAMQMKKAGFPVSSLQGDLSQNQRQTALNGFREGKYRILI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+D+P+  E Y HRIGRTGRA + G AF+ V  E+   +D+I
Sbjct: 295 ATDIAARGIDVTRISHVINYDMPDTVEAYTHRIGRTGRATKSGDAFSFVTSEERDLVDSI 354

Query: 361 EKLIEKKV 368
           E ++ K++
Sbjct: 355 EYVLGKQI 362


>gi|307129391|ref|YP_003881407.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
 gi|306526920|gb|ADM96850.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
          Length = 631

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 133/378 (35%), Positives = 225/378 (59%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLS  ++ A+ + GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   SFASLGLSAPILNALSEMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     ++ P+ L+L PTRELA QVA+   ++ K+      + +  G  ++ Q + L 
Sbjct: 67  NIKA---DLKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F+ +P+ + + +  +T   I   +   Y     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEA---LIRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  ++   + L
Sbjct: 361 ERTMKLTIPEVDLPNAEL 378


>gi|189425337|ref|YP_001952514.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
 gi|189421596|gb|ACD95994.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 452

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 147/415 (35%), Positives = 215/415 (51%), Gaps = 11/415 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DL L  +V+  +  AG+   TPIQ +T+PL L   DV G AQTGTGKTA+F++ + 
Sbjct: 1   MKFSDLSLPAQVLQGIHQAGFNACTPIQAQTLPLSLSGKDVAGQAQTGTGKTAAFLITLF 60

Query: 61  T-----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           T             +  PR LIL PTREL  Q+  + +  G +    +  + GGI +  Q
Sbjct: 61  TKLLASPSAAADGSLPRPRALILAPTRELVVQIEKDAQLLGSHCGFNIQAIYGGIDYMKQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ GAD++I TPGR++D+  +    + +IE+LVIDEADRM DMGFIP ++ I   +P
Sbjct: 121 KNALKDGADIVIGTPGRLIDYLKQKVYSLKHIEMLVIDEADRMFDMGFIPDLRYILRRLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q      + T   + +  ++       +V+       T E      Y   +K+   L
Sbjct: 181 PFDQRQNLMFSATLNQRVMELSYEFMNVPQKVSVTPEKM-TAERVEQVLYHVSNKEKFPL 239

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L  ++ M   ++F N K+    L   L    F    I G++DQR RM IL  FK G 
Sbjct: 240 LLGLLRREGMARTMLFVNTKREAERLQDRLNANEFPCRVISGDVDQRKRMNILEQFKRGE 299

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + +++A+D+A+RGL I  V HV N+D+P  AE+Y+HRIGRT RAG  GKA +L  ++   
Sbjct: 300 LAILIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISLADEDGAF 359

Query: 356 HIDAIEKLIEKK--VDWLNGDL---SSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           +I+AIE+ I  K  V+W   DL       P      +A     R   P  +   G
Sbjct: 360 YIEAIEEYIRHKVAVEWAEDDLFIHDYKRPKHRPAPVASTKQPRGQRPKAKDQKG 414


>gi|254417807|ref|ZP_05031531.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
 gi|196183984|gb|EDX78960.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
          Length = 510

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 164/459 (35%), Positives = 252/459 (54%), Gaps = 13/459 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL+  ++ A+   GY KPTPIQ K IP V+Q  D+ GIAQTGTGKTA+F LP+L 
Sbjct: 17  TFESMGLNKALLQALASEGYTKPTPIQEKAIPDVMQGKDLLGIAQTGTGKTAAFALPILH 76

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                +   + R  R L+L PTRELA Q+ D+F+ YG +    VA++ GG+ + AQ + L
Sbjct: 77  RLAENRIAPKPRTTRVLVLSPTRELATQIGDSFKAYGAHLGFRVAVIFGGVKYGAQERAL 136

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G D+L+  PGR+LDH  +  L +++ EILV+DEAD+MLD+GFI  I+ I S +P  RQ
Sbjct: 137 QQGLDILVAAPGRLLDHIQQKNLDLSSTEILVLDEADQMLDLGFIKPIRQIVSRIPAKRQ 196

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSATM  E+ K++   L++P +++V   S+T + I    V       +        +
Sbjct: 197 NLFFSATMPTEIGKLAGELLKDPVKVQVTPQSTTVQRISQSVVHVEQGRKRAL---LTEM 253

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S       ++F   K     +   LE  G    AIHGN  Q  R + L  FK+G ++++
Sbjct: 254 FSDPEYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLDAFKKGKLRVL 313

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV NF++P+  E Y+HRIGRT RAG  G A + VA +++K +  
Sbjct: 314 VATDIAARGIDVDGVSHVVNFELPHVPEAYVHRIGRTARAGADGTAISFVAGDEMKLLKD 373

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKID-IAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           IEK+  +K+  ++      +  L ++D         K   +P++  G           +S
Sbjct: 374 IEKVTRQKIPAIDRRN---DKALGQLDATIMATGVGKKATMPEREGGERNEGGRGGRGRS 430

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
            +P ++  +     Q  ++  A      G  PA   P+ 
Sbjct: 431 RVPHRDGVRPEGGGQPHRQRRARP----GETPAAPRPER 465


>gi|302670646|ref|YP_003830606.1| RNA helicase DEAD/DEAH box family protein [Butyrivibrio
           proteoclasticus B316]
 gi|302395119|gb|ADL34024.1| RNA helicase DEAD/DEAH box family [Butyrivibrio proteoclasticus
           B316]
          Length = 711

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 134/368 (36%), Positives = 208/368 (56%), Gaps = 6/368 (1%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
            + GL  +++ AV + G+   +PIQ   IP+++Q  D+ G AQTGTGKTA+F +P+L  +
Sbjct: 62  DESGLDERIIRAVSEMGFEYMSPIQKAAIPVMIQGKDIIGQAQTGTGKTAAFGIPLLHQV 121

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLERG 122
           +     ++     +L PTRELA Q AD+   + K       L +  G     Q K L  G
Sbjct: 122 DPANKHLQAV---VLCPTRELAMQAADDIRDFAKYMFGIKVLAVYGGQDISRQIKALSNG 178

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++DH  R  + M ++++LV+DEAD MLDMGF   I+ I   +P  RQT L
Sbjct: 179 VQIVVGTPGRVMDHMRRHTMKMKDVKVLVLDEADEMLDMGFREDIETILQGMPMERQTAL 238

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + + K+++ + ++       TP     T+     A Y    K    +   L   
Sbjct: 239 FSATMPEAILKITKTYQKSDAEYIKMTPKEI--TVAAIEQAYYRVPQKLKEDVLVRLMDY 296

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IFCN K+ V  L  SL+ +G+    +HG++ Q  R  +++ F+ G I +++A+
Sbjct: 297 YNPARSLIFCNTKRMVDQLAESLKGKGYLADGLHGDLSQNQRDTVMNLFRNGRINILIAT 356

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+D+  V  VFN+D+P   E Y+HRIGRTGRAGR G +FTLV   ++  +  IEK
Sbjct: 357 DVAARGIDVSGVEAVFNYDIPEDIEYYVHRIGRTGRAGRSGMSFTLVGGREMYKLREIEK 416

Query: 363 LIEKKVDW 370
           +   K++ 
Sbjct: 417 VCHTKIEE 424


>gi|229017793|ref|ZP_04174677.1| ATP-dependent RNA helicase [Bacillus cereus AH1273]
 gi|229024016|ref|ZP_04180493.1| ATP-dependent RNA helicase [Bacillus cereus AH1272]
 gi|228737285|gb|EEL87803.1| ATP-dependent RNA helicase [Bacillus cereus AH1272]
 gi|228743484|gb|EEL93600.1| ATP-dependent RNA helicase [Bacillus cereus AH1273]
          Length = 450

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 149/432 (34%), Positives = 238/432 (55%), Gaps = 16/432 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPASKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EK +   +     +     P ++ +D    N      P P+KS  + +R     S+    
Sbjct: 360 EKTLGAPIQRQIIE----QPMIKNVD---ENGKPVQKPAPKKSGQYRQRDSREGSRSGSK 412

Query: 421 --PLKESEKISK 430
             P  +S   S+
Sbjct: 413 GGPRNDSRNSSR 424


>gi|190892959|ref|YP_001979501.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652]
 gi|190698238|gb|ACE92323.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652]
          Length = 565

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 150/375 (40%), Positives = 225/375 (60%), Gaps = 4/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LG+S  +V  +   G   PTPIQ + IPL+LQ  D+ G+AQTGTGKTA+F LP++ 
Sbjct: 24  NFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLQGRDLIGLAQTGTGKTAAFGLPLIE 83

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L     R      RTLIL PTREL  Q+ADN +K+ +   L + +++GG+    Q  +L
Sbjct: 84  KLLADERRPDNRTTRTLILAPTRELVNQIADNLKKFIRKSPLRINVVVGGVSINKQQLQL 143

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G DVL+ TPGR+LD  NR  + +  +  LV+DEAD+MLD+GF+  ++ I  LVP  RQ
Sbjct: 144 EKGTDVLVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDLGFVHDLRKIAKLVPKKRQ 203

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   +  ++  +L +P ++EV  P   A+ +E        +  K    L +  
Sbjct: 204 TMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTE--LLRKS 261

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++     I+F   K     L   L+  G+SV +IHGN  Q  R + L  F++G+I+ +
Sbjct: 262 LTENPDGRAIVFLRTKHGAEKLMKHLDNIGYSVASIHGNKSQGQRERALKAFRDGSIKTL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DIP V HV+N+D+P   + Y+HRIGRT RAGR G A    A ++ K +  
Sbjct: 322 IATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRD 381

Query: 360 IEKLIEKKVDWLNGD 374
           IE+L+   +   +G+
Sbjct: 382 IERLMGIDIAVASGE 396


>gi|148263018|ref|YP_001229724.1| DEAD/DEAH box helicase domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146396518|gb|ABQ25151.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
           Rf4]
          Length = 451

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 141/432 (32%), Positives = 221/432 (51%), Gaps = 9/432 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L  +V+  +   G+ + TPIQ K +P  L   DV G AQTGTGKTA+F++ + 
Sbjct: 1   MKFTDLNLPEQVLQGIAYTGFTECTPIQEKALPPALAGKDVAGQAQTGTGKTAAFLISLF 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           T    ++       PR LIL PTREL  Q+  + ++ GK+   T+  + GG+ +  Q   
Sbjct: 61  TRLLKQEKVGTEHHPRALILAPTRELVVQIEKDAQQLGKHTGFTIQAIYGGVDYMKQKNA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D++I TPGR++D+  +    + NIE LVIDEADRM DMGFI  ++ I   +P   
Sbjct: 121 LKEGVDIVIGTPGRLIDYLKQKVYSLKNIEALVIDEADRMFDMGFIADLRFILRRLPPFD 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +      + T   + +   +       +V        T E      Y    K+   L   
Sbjct: 181 ERQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQM-TAERVEQVIYHVSRKEKFPLLLG 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  ++ M+  +IF N K+    L   L    F    I G+++QR R++IL +FK G + +
Sbjct: 240 LLRKEGMERTMIFVNTKREAEFLFDRLNVNDFPARVISGDVEQRKRLRILEDFKSGKLPI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+D+A+RGL I  V HV N+D+P  AE+Y+HRIGRT RAG  GKA +L  ++   +++
Sbjct: 300 MIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISLADEDGALYLE 359

Query: 359 AIEKLIEKKV--DWLNGDL--SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
            I + I++++  +W   +L          +   A   H R   P P+      +  +  +
Sbjct: 360 DIHEYIKERIPVEWAEDELFVHDYIRSKPRPKPAAKPHGRA--PAPRHGKPAGKHTEKPA 417

Query: 415 SQKSHIPLKESE 426
            + +  P  E E
Sbjct: 418 EKSAEKPAGEGE 429


>gi|169779864|ref|XP_001824396.1| ATP-dependent RNA helicase dhh1 [Aspergillus oryzae RIB40]
 gi|91206577|sp|Q2U5A2|DHH1_ASPOR RecName: Full=ATP-dependent RNA helicase dhh1
 gi|83773136|dbj|BAE63263.1| unnamed protein product [Aspergillus oryzae]
          Length = 511

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 127/420 (30%), Positives = 202/420 (48%), Gaps = 12/420 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     + +    LIL PTRELA Q +   +  GK+  + V +  GG        +L 
Sbjct: 107 ERINPKSTKTQA---LILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRLN 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 164 DAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F     R           T+            K+       L 
Sbjct: 224 MLFSATFPLIVKS----FKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q+ R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKI 399

Query: 361 EKLIEKKVDWLNGDLSSL-----NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           E+ +  ++  +  ++        +P      IA  + A+      Q     +RR  N+S+
Sbjct: 400 EQELGTEIQPIPQNIDKKLYVYESPETIPRPIANASQAQLATSGNQTQNMGERRHNNHSN 459


>gi|84515959|ref|ZP_01003320.1| DEAD/DEAH box helicase [Loktanella vestfoldensis SKA53]
 gi|84510401|gb|EAQ06857.1| DEAD/DEAH box helicase [Loktanella vestfoldensis SKA53]
          Length = 447

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 152/386 (39%), Positives = 227/386 (58%), Gaps = 5/386 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  LGL+P+++  + + G   PTPIQ + IP  +   DV G+AQTGTGKTA+F LPM+
Sbjct: 2   MDFDMLGLAPRLIAVLKEQGITDPTPIQTQAIPHAMNGRDVMGLAQTGTGKTAAFGLPMI 61

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L K   +         +L PTRELA Q+ADN   Y K  +L VAL++GG    AQ K+
Sbjct: 62  HALMKAGVKPNPKAVRGLVLAPTRELAKQIADNLTAYTKGSHLKVALVVGGAGITAQTKR 121

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+L+ TPGR++D  +R  + ++    LV+DEAD+MLDMGFI  ++ I  L+   R
Sbjct: 122 LAGGVDLLVATPGRLIDLLDRRAVRLDETVYLVLDEADQMLDMGFIHALRRIAPLLAKDR 181

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT++FSATM   + ++++ FL +  R++VN P    + I                +    
Sbjct: 182 QTMMFSATMPKLMSELADAFLTDAVRVQVNPPGQAVKKIAQSVHFVAQAAKTDLLVDLL- 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F   K     L  +LE +GF+  +IHGN  Q  R + +  FK G +++
Sbjct: 241 --DKHRDELALVFGRTKHGCEKLYKTLEAKGFAAASIHGNKSQGQRERAIEAFKAGKVRV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DIP V HV+N+D+PN AENY+HRIGRT RAG  G A  LVA +++  + 
Sbjct: 299 LVATDVAARGIDIPGVRHVYNYDLPNVAENYVHRIGRTARAGADGSAIALVAPDEMIELQ 358

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
            IEK +++ +   +G    + P  +K
Sbjct: 359 DIEKAMKETIPVASGRPWEIMPGQKK 384


>gi|320158915|ref|YP_004191293.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus MO6-24/O]
 gi|319934227|gb|ADV89090.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus MO6-24/O]
          Length = 509

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 180/469 (38%), Positives = 267/469 (56%), Gaps = 21/469 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP +L+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIQEKGYDTPSPIQLQAIPAILEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L KG   R    R LIL PTRELAAQV +N   Y ++ +L  A++ GG+    Q  +L
Sbjct: 61  ERLAKGPRVRANHIRALILTPTRELAAQVQENVFMYSRHLDLNSAVVFGGVKINPQMLRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +++  +  + +E+L++DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLYSQNAVKFDQLEVLILDEADRMLDMGFIRDIRKILALLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++++++  + NP  I VN  +STA T+E C         KK   +   L
Sbjct: 181 NLLFSATFSDEIRELAKGLVNNPIEISVNPANSTARTVEQCIYPADV---KKKPAMLAKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  ++F   K     L   L  QG +  AIHGN  Q +R K L++FK G ++++
Sbjct: 238 INDGDWRQVLVFTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV   +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGETGKAISLVCALEAPELFA 357

Query: 360 IEKLIEKKVDW--LNGDLSSLNPPLEKIDI------AQHNHARKNNPIPQKSTGFDRRKK 411
           IE+LI++ +    L G   +   P  K+D             +   P  + +      K 
Sbjct: 358 IERLIQELLPRKALEGYAPTNAVPESKLDTRPIKPKKPKKPKKPKAPNAEAAGSDASSKG 417

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQ-----ENDADSLGFR----GNMPA 451
           N  ++ +  P  ++    K ++         ND+ + G R    G+ PA
Sbjct: 418 NQKAKTADKPQGQNRGNGKAKRQFSAPKEGNNDSANKGKRPNTKGSKPA 466


>gi|296328514|ref|ZP_06871033.1| DEAD/DEAH box family ATP-dependent RNA helicase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296154323|gb|EFG95122.1| DEAD/DEAH box family ATP-dependent RNA helicase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 528

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 134/368 (36%), Positives = 210/368 (57%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F +LGLS KV+  +   GY  PTPIQ  TIP +L+   D+ G AQTGTGKTA+F LP++
Sbjct: 9   EFRELGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E     +   + ++L PTRELA QVA+       +  + V  + GG   + Q K ++
Sbjct: 69  ENFEN----LEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR++D   R  L +N+++  ++DEAD ML+MGF+  I+ I +     ++ 
Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM DE+ KV++N ++  + + V +   T +  E      +    +        + 
Sbjct: 185 LFFSATMPDEIMKVAKNHMKEYEVLAVKSRELTTDLTEQ---IYFEVNERDKFEALCRII 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  GIIFC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I ++V
Sbjct: 242 DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T +  ++ + +  I
Sbjct: 302 ATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 361

Query: 361 EKLIEKKV 368
           +K ++K++
Sbjct: 362 QKAVKKEI 369


>gi|241767199|ref|ZP_04764950.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
 gi|241362168|gb|EER58246.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
          Length = 489

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 162/373 (43%), Positives = 222/373 (59%), Gaps = 8/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L+  +  AV + GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L 
Sbjct: 4   SFSNLSLAEPLARAVAEMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQ 63

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L K  +    P        +L PTRELA QVA     Y K   L   ++ GG+  + Q 
Sbjct: 64  RLLKHESSSTSPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQT 123

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P 
Sbjct: 124 LELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPK 183

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R TLLFSAT + E+++++ ++LQ+P  IEV       ET        Y+          
Sbjct: 184 QRTTLLFSATFSPEIKRLAGSYLQDPITIEVAR---PNETASTVEQHFYSANDDDKRHAI 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             +     +K   IF N K     L  SLE++G    A+HG+  Q  R+K L  FK+G +
Sbjct: 241 HQVLKSRGIKQAFIFVNSKLGCARLARSLEREGLKTAALHGDKSQDERLKALDAFKQGAV 300

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+V +D+AARGLDI DV  VFNFDVP  AE+Y+HRIGRTGRAG  G A TLV+  D + 
Sbjct: 301 DLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSGSDARL 360

Query: 357 IDAIEKLIEKKVD 369
           +  IEKL++KK+D
Sbjct: 361 VADIEKLLKKKID 373


>gi|237742838|ref|ZP_04573319.1| ATP-dependent RNA helicase [Fusobacterium sp. 4_1_13]
 gi|229430486|gb|EEO40698.1| ATP-dependent RNA helicase [Fusobacterium sp. 4_1_13]
          Length = 528

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 134/368 (36%), Positives = 210/368 (57%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F +LGLS KV+  +   GY  PTPIQ  TIP +L+   D+ G AQTGTGKTA+F LP++
Sbjct: 9   EFRELGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E     +   + ++L PTRELA QVA+       +  + V  + GG   + Q K ++
Sbjct: 69  ENFEN----LEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR++D   R  L +N+++  ++DEAD ML+MGF+  I+ I +     ++ 
Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM DE+ KV++N ++  + + V +   T +  E      +    +        + 
Sbjct: 185 LFFSATMPDEIMKVAKNHMKEYEVLAVKSRELTTDLTEQ---IYFEVNERDKFEALCRII 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  GIIFC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I ++V
Sbjct: 242 DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T +  ++ + +  I
Sbjct: 302 ATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 361

Query: 361 EKLIEKKV 368
           +K ++K++
Sbjct: 362 QKAVKKEI 369


>gi|254472453|ref|ZP_05085853.1| ATP-dependent rna helicase, dead/deah box family [Pseudovibrio sp.
           JE062]
 gi|211958736|gb|EEA93936.1| ATP-dependent rna helicase, dead/deah box family [Pseudovibrio sp.
           JE062]
          Length = 453

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 164/411 (39%), Positives = 227/411 (55%), Gaps = 7/411 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LG++     A+   GY +PTPIQ   IP +L   D+ G+AQTGTGKTA+F +P+L 
Sbjct: 3   DFDKLGVAKPFQIALKSKGYSEPTPIQENAIPYILDGKDLLGLAQTGTGKTAAFAVPLLQ 62

Query: 62  ILEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L + R R   +  R+LIL PTRELA Q+  N + Y     +  + ++GG+PF  Q   L
Sbjct: 63  RLLESRYRAAPKSVRSLILTPTRELADQITKNIKAYAGRTKMYTSCVVGGVPFPPQFHAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG DVL+ TPGR+LD   +  +  + +EI V+DEAD+MLD+GFI  ++ I  L+P  RQ
Sbjct: 123 QRGLDVLVATPGRLLDLHRKNGVSFDELEIFVLDEADQMLDLGFIAELEEIAYLLPKKRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM  E++ +SE FL NP  +    P++T ET+                      
Sbjct: 183 TLFFSATMPREIRDLSERFLTNPVEVSTAPPATTVETVTQQIAHLEKDAKFPLLKELLEK 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     ++F   KK    L   L   G    AIHG++ Q  R K L  FK G ++ +
Sbjct: 243 DECE---RALVFTLTKKGSARLAARLNADGVPAEAIHGDMSQAERQKTLDKFKRGKLKTL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ D+ HV NFD+PN  ENY+HRIGRT RAG+ G A T    ED   + A
Sbjct: 300 VATDVAARGIDVSDISHVINFDMPNATENYVHRIGRTARAGKSGTAITFCLPEDRGMLRA 359

Query: 360 IEKLIEKKVDWLNG--DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           I+KLI KK+  ++G     S   P      AQ    R     P+K  G  +
Sbjct: 360 IQKLIGKKIAEMDGFTFFPSDREPKSARSNAQVAGKRAKGSGPRKGPGNGK 410


>gi|148975453|ref|ZP_01812324.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
           bacterium SWAT-3]
 gi|145964881|gb|EDK30132.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
           bacterium SWAT-3]
          Length = 423

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 150/423 (35%), Positives = 239/423 (56%), Gaps = 12/423 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLS  ++  + +  +  PT +Q + IPLVL+  DV   AQTGTGKTA+F LP++ 
Sbjct: 7   SFNQLGLSEHLLATLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLPIIQ 66

Query: 62  ILEKGRARVRMPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L   +  V     L+      PTRELA QV DN   Y K  +L V +  GG+  + Q  
Sbjct: 67  RLLATKDNVIPNPKLVRALVLVPTRELAQQVFDNVTSYAKGTDLKVVVAYGGVSMKVQTD 126

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GAD+L+ TPGR++DH     ++++  E+LV+DEADRMLDMGF+P I+ I S +   
Sbjct: 127 NLRAGADILVATPGRLIDHMFTKNIMLSQTEVLVLDEADRMLDMGFMPDIKRILSRMNEV 186

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL FSAT  ++++ ++   +Q+P  I+V   +STAET+       Y    K+ + L  
Sbjct: 187 RQTLFFSATFDNKIKAIAHRMMQSPSEIQVTPTNSTAETV---KQMVYPVDKKRKSELLA 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   +  +  ++F   K+    L   L+  G    +I+G+  Q +R K L +FK G ++
Sbjct: 244 YLIGSNNWQQVLVFTKTKQGTDALVKELKLDGIKAASINGDKSQGARQKALDDFKSGKVR 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++A+D+AARG+DI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L++ ++   +
Sbjct: 304 ALIATDVAARGIDIQQLEQVVNYDMPYKAEDYVHRIGRTGRAGNSGLAISLMSHDEAYLL 363

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            AIE+L++ ++  +WL G   S   P + +   +   ++  +   +K     +  +N   
Sbjct: 364 GAIERLLDTRLPQEWLKGFEPS---PEQDVSPERGGSSKSRSAEKRKMKAKLKIHQNRGK 420

Query: 416 QKS 418
            + 
Sbjct: 421 ARR 423


>gi|91224087|ref|ZP_01259350.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01]
 gi|91190998|gb|EAS77264.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01]
          Length = 517

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 180/467 (38%), Positives = 261/467 (55%), Gaps = 22/467 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ K IP +L+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G   R    R LIL PTRELAAQV +N   YG++  L+ A++ GG+    Q  +L
Sbjct: 61  ERLSNGPRVRANQVRALILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMLRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +N+  +  + +E+LV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ +++  + NP  I VN  +STA T+E           KK A +   L
Sbjct: 181 NLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADV---KKKAPMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  ++F   K     L   L +Q     AIHGN  Q +R K L++FK G I+++
Sbjct: 238 IKDGDWKQVLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV   +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFA 357

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKIDIA--------------QHNHARKNNPIPQKS 403
           IE+LI++ +    L G   +   P  K+D                  N A +N P  +K 
Sbjct: 358 IERLIQEVLPRKELEGFAPTNVVPESKLDTRPIKPKKPKKPKKPKAPNAAGENAPATEKK 417

Query: 404 T--GFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
              G ++ K+ ++   +      ++  +   +  +E    +     +
Sbjct: 418 AGNGANKPKRRFNGGNNGNKNSTNQGGAGKPKGNREGQGRANSKPDD 464


>gi|34763211|ref|ZP_00144175.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|256846171|ref|ZP_05551629.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_36A2]
 gi|27887121|gb|EAA24228.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|256719730|gb|EEU33285.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_36A2]
          Length = 528

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 134/368 (36%), Positives = 210/368 (57%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F +LGLS KV+  +   GY  PTPIQ  TIP +L+   D+ G AQTGTGKTA+F LP++
Sbjct: 9   EFRELGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E     +   + ++L PTRELA QVA+       +  + V  + GG   + Q K ++
Sbjct: 69  ENFEN----LEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR++D   R  L +N+++  ++DEAD ML+MGF+  I+ I +     ++ 
Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM DE+ KV++N ++  + + V +   T +  E      +    +        + 
Sbjct: 185 LFFSATMPDEIMKVAKNHMKEYEVLAVKSRELTTDLTEQ---IYFEVNERDKFEALCRII 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  GIIFC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I ++V
Sbjct: 242 DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T +  ++ + +  I
Sbjct: 302 ATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 361

Query: 361 EKLIEKKV 368
           +K ++K++
Sbjct: 362 QKAVKKEI 369


>gi|296314358|ref|ZP_06864299.1| ATP-dependent RNA helicase RhlE [Neisseria polysaccharea ATCC
           43768]
 gi|296838913|gb|EFH22851.1| ATP-dependent RNA helicase RhlE [Neisseria polysaccharea ATCC
           43768]
          Length = 457

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 162/471 (34%), Positives = 261/471 (55%), Gaps = 34/471 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +      +
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNL---LE 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L     +   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 242 RLIVDLHIPQVIVFCKTKQSVDQVTRDLIRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPTQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416
           +AI++L   K+             +E+I+  +     +    P+K+   + R++N Y S 
Sbjct: 362 EAIKELTGNKL------------LIERIEGFEPRWWEQEGSKPEKTETSEPRQRNRYESA 409

Query: 417 KSHIPLKESEKISKLQQDIQENDADS--------LGFRGNMPAFMLPKNRG 459
           K+     + EK ++ +    +  A             R + P  +L    G
Sbjct: 410 KA-----QREKNTRPETTANDAGAACGKIAGRSRRSRREHQPCALLQPRYG 455


>gi|163789335|ref|ZP_02183776.1| putative ATP-dependent RNA helicase [Flavobacteriales bacterium
           ALC-1]
 gi|159875403|gb|EDP69466.1| putative ATP-dependent RNA helicase [Flavobacteriales bacterium
           ALC-1]
          Length = 411

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 148/388 (38%), Positives = 230/388 (59%), Gaps = 6/388 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL   +  A+  +GYV+PT +Q + IP +L + DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFKDLGLIKPLQKAIEASGYVEPTLVQQRAIPPILDKKDVIVSAQTGTGKTAAFALPIL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +    R +  + LI+ PTRELA Q+  NF+ Y +  NL   ++ GG   E Q  
Sbjct: 61  QQLFDQQDAPKRGKKIKALIISPTRELAVQIQQNFKTYAQFTNLRSLVIFGGTSIEPQID 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+L+ TPGR+LD   +  + +++IE  V+DEAD ML MGFI  ++ I  L P  
Sbjct: 121 VLKKGIDILVATPGRLLDLHKQDYVNLDHIETFVLDEADLMLAMGFIDDVKKIERLCPEN 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTLLFSAT+  ++++++   L++P+RI+V    S A+ +         +   +  L   
Sbjct: 181 KQTLLFSATIPYKIEQLASGILKDPERIDVTPTRSVAKDVSQILYYVPKRNKIELCLHL- 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                    N +IF   K  V  L  +L K G++V +IHG+ +Q  R   L+ FK G ++
Sbjct: 240 --MRNTIKGNVLIFRRTKFGVNKLEQTLLKNGYTVDSIHGDKNQSDRQTALNKFKNGYVK 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARG+DI ++ +VFNFD+PN+AE Y+HRIGRTGRAG  GKA+ + + ++  ++
Sbjct: 298 VLIATDVAARGIDIDELDNVFNFDMPNQAETYVHRIGRTGRAGNIGKAYAMCSADEKSYV 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
             IE+ I  ++         L+P  + I
Sbjct: 358 KIIEQYINVQIPIETEHPYPLDPKAKPI 385


>gi|296184919|ref|ZP_06853330.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
 gi|296050701|gb|EFG90124.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
          Length = 374

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 142/367 (38%), Positives = 215/367 (58%), Gaps = 6/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L  KV+ A+   G+ +P+ IQ + IP++L  +D+ G AQTGTGKT +F  P+L
Sbjct: 4   IKFSDLNLHKKVLQAIDAMGFEEPSQIQAEAIPVILSGNDMIGQAQTGTGKTLAFGAPVL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + +E           L+L PTRELA QV D   +  K     +  + GG P + Q K L 
Sbjct: 64  SQIE----SSDKISALVLTPTRELAIQVNDELARIAKFKRTKLLPVYGGQPIDRQIKSLR 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGRILDH  R  L ++ +  LV+DE+D ML+MGFI  I+ I   +   RQT
Sbjct: 120 RGVDVVVGTPGRILDHIKRNTLDLSGVNFLVLDESDEMLNMGFIDDIEEIIKSLNKDRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+ K++  +++N  +      +S        +        +  +L +  + 
Sbjct: 180 LLFSATMPKEIAKLASKYMKNEVKHIKIVKNSLTVEKIKQYYYEVKHKDRFESLCR--IL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D   + IIFC  K+ V  L  S++ +G++V  +HG++ Q  R+  L  FKEGT+  +V
Sbjct: 238 DIDEPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGTLDFLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV HV N+D+P   E+Y+HRIGRTGRA + G A++LV   +   I  +
Sbjct: 298 ATDVAARGIDVDDVSHVINYDLPQDMESYVHRIGRTGRANKEGIAYSLVTPREYIMIKQL 357

Query: 361 EKLIEKK 367
           EK  +++
Sbjct: 358 EKFTKRQ 364


>gi|145608086|ref|XP_360845.2| hypothetical protein MGG_03388 [Magnaporthe oryzae 70-15]
 gi|152013507|sp|A4R715|DHH1_MAGO7 RecName: Full=ATP-dependent RNA helicase DHH1
 gi|145015595|gb|EDK00085.1| hypothetical protein MGG_03388 [Magnaporthe oryzae 70-15]
          Length = 524

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 189/377 (50%), Gaps = 7/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F + GL   ++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 36  LEFENFGLKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVVPAL 95

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +V   + LIL PTRELA Q +   +  GK+  + V +  GG        +L+
Sbjct: 96  ETI---NPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTTLRDDILRLQ 152

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +    ++   + ++DEAD++L + F P I+ +    P  RQ 
Sbjct: 153 DPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQV 212

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    +++    F                 T+            K+       L 
Sbjct: 213 MLFSATFPISVKE----FSDKNMTNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 268

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q++R ++  +F+ G  + +V
Sbjct: 269 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMQQQARNRVFHDFRNGVCRNLV 328

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L++ ED  ++  I
Sbjct: 329 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLISWEDRFNLYNI 388

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +   +  
Sbjct: 389 ERDLGTEIQPIPSTIDK 405


>gi|116329398|ref|YP_799118.1| ATP-dependent RNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330001|ref|YP_799719.1| ATP-dependent RNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116122142|gb|ABJ80185.1| ATP-dependent RNA helicase (superfamily II) [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116123690|gb|ABJ74961.1| ATP-dependent RNA helicase (superfamily II) [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 513

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 142/400 (35%), Positives = 236/400 (59%), Gaps = 12/400 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++L LS ++  A+L+ G+ + +PIQ + IP++L+  D+ G AQTGTGKTA+F +P +
Sbjct: 4   LKFSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPAI 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
            +LE      +  + LIL PTREL  QV++ F K  K       + +  G   E Q K L
Sbjct: 64  ELLEV---ESKHLQALILCPTRELVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQLKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   ++I TPGR++DH  RG + +N+I+I+V+DEAD MLDMGF   ++ I    P  RQ
Sbjct: 121 RKNPQIVIATPGRMMDHMRRGSIRLNDIKIVVLDEADEMLDMGFREDMEFILKDTPIDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++FSATMT+++  + + F ++P+ I     +    +        Y             L
Sbjct: 181 TIMFSATMTEDILTLMKRFQKHPQII---DVTHQKLSAPKIEQIYYEIQENAKGEALARL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +K  ++FCN K  V  +   L+ +G+   A+HG+++Q+ R K+++ F+ G I+++
Sbjct: 238 IEYRNVKLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMNGFRNGNIEIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A RG+D+ +V  VFN+D+P   E+Y+HRIGRTGRAG+ G AF+ +  + I ++  
Sbjct: 298 VATDVAGRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKK 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           IE++   K++   G + +L+  LE+  I  H++  K   I
Sbjct: 358 IERINGIKIEA--GKIPTLDD-LEETKI--HSYTSKVRSI 392


>gi|29612573|gb|AAH49396.1| Ddx49-A-prov protein [Xenopus laevis]
          Length = 482

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 155/464 (33%), Positives = 236/464 (50%), Gaps = 13/464 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGLS  ++      G +KP+P+Q   IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 7   FSSLGLSSWLIDQCSQLGILKPSPVQENCIPPILEGRDCMGCAKTGSGKTAAFVLPILQK 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PTRELA Q+A+ F   GK   L   ++IGG+   AQ  +L R 
Sbjct: 67  LSE---DPFGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIIGGMDMVAQALELSRK 123

Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQN---ITSLVPFTR 178
             ++I TPGR+ DH        +  I  LV+DEADR+L+ G   + Q+   I   VP  R
Sbjct: 124 PHIVIATPGRLADHIRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTQDLQVILEAVPAQR 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKCALLQQ 237
           QTLLFSAT+TD LQ++    +  P   E  +   T E   +   +            L Q
Sbjct: 184 QTLLFSATLTDTLQELKTVAMNKPFFWESTSEVRTVEQLDQRYILVPEKVKDAYLVYLIQ 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             Q +    + +IF N  K    L   L +  F   A+H  + Q+ R   L+ FK    +
Sbjct: 244 KFQDEHEDWSIMIFTNTCKTCQILNMMLREFSFPSVALHSMMKQKQRFAALAKFKSSVFK 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARGLDIP V  V N + P   + YIHR+GRT RAGR+G A TLV + DI  +
Sbjct: 304 ILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGMAITLVTQYDIHLV 363

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            AIE  I  K++      + +   L      Q N AR+   I  + T FD +K+    ++
Sbjct: 364 HAIEGQINMKLEEFKVKENEVLKIL-----TQVNVARRECEIKLECTDFDEKKEINKRKQ 418

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKL 461
             +  K+ +  +K + ++++       F+ ++   +  K   ++
Sbjct: 419 LILEGKDPDLEAKRKAELEKIKKQKKKFKEHIQETIQNKRDAQV 462


>gi|325279879|ref|YP_004252421.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324311688|gb|ADY32241.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
           20712]
          Length = 374

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 144/370 (38%), Positives = 218/370 (58%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   ++ A+ + GY +PTPIQ + IP+ L R D+ G AQTGTGKTASF +P++
Sbjct: 1   MTFKELNIIQPILKAIEEKGYNRPTPIQQQAIPVALSRKDILGCAQTGTGKTASFAIPII 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                +    + +  + LIL PTRELA Q+++  ++Y +   +   ++ GG+    Q   
Sbjct: 61  QLLQADPIITKRKGVKALILTPTRELALQISECLDEYARYTPVRHGVMFGGVNQRPQVTM 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G D+L+ TPGR+LD  ++G L ++ ++  V+DEADRMLDMGFI  I+ I   +P  +
Sbjct: 121 LQKGIDILVATPGRLLDLMSQGFLSLDQVKYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM D +  ++   L+NP +I +   S T + IE            +  +    
Sbjct: 181 QTLFFSATMPDSIVTLASALLKNPVKITITPESPTVDAIEQFVYFVEKAEKGRLLISLLR 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  ++ ++F   K N   +   L K G    AIHGN  Q +R   L NFK G  ++
Sbjct: 241 KAEN---QSVLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARG+DI ++  V N+D+P+  E Y+HRIGRTGRAG  G AFT  ++E+ K +D
Sbjct: 298 MVATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGTAFTFCSQEERKLVD 357

Query: 359 AIEKLIEKKV 368
            I+KL  KK+
Sbjct: 358 NIQKLTGKKL 367


>gi|268573560|ref|XP_002641757.1| Hypothetical protein CBG10097 [Caenorhabditis briggsae]
 gi|187031542|emb|CAP29606.1| hypothetical protein CBG_10097 [Caenorhabditis briggsae AF16]
          Length = 486

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 136/412 (33%), Positives = 224/412 (54%), Gaps = 7/412 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+S  +  A L  G+ KP+ IQ   +P  L+  DV G+A+TG+GKT +F +P+L 
Sbjct: 45  TFAELGVSQPLCDACLRLGWTKPSKIQQAALPHALEGKDVIGLAETGSGKTGAFAIPVLQ 104

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L            L+L PTRELA Q+   FE  G    L VA+++GG+   AQ   L R
Sbjct: 105 SLLDHPQAFFC---LVLTPTRELAFQIGQQFEALGSGIGLIVAVIVGGVDMAAQAMALAR 161

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR++DH    K      ++ L++DEADR+L+M F   +  I  ++P  R+T
Sbjct: 162 RPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPKERRT 221

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+    L++P R+ ++T     +T+++         +K        L 
Sbjct: 222 YLFSATMTKKVSKLERASLRDPARVSISTRY---KTVDNLKQHYIFIPNKYKETYLVYLL 278

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + I+FC      + +   L + G     +HG + Q  R+  L+ FK    +++V
Sbjct: 279 NEHAGNSAIVFCATCATTMQVAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILV 338

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARGLDIP V  V N+D+P+++++Y+HR+GRT RAGR G A T+V + D++    I
Sbjct: 339 CTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGLAITVVTQYDVEAYQKI 398

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           E  + KK+D      + +   +E+   A  N   +   + +K     +R++N
Sbjct: 399 EANLGKKLDEYKCVENEVMVLVERTQEAMENAKVEMKEMDEKRKSGKKRRQN 450


>gi|260495553|ref|ZP_05815678.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_33]
 gi|260196895|gb|EEW94417.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_33]
          Length = 528

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 134/368 (36%), Positives = 210/368 (57%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F DLGLS KV+  +   GY  PTPIQ  TIP +L+   D+ G AQTGTGKTA+F LP++
Sbjct: 9   EFRDLGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E     +   + ++L PTRELA QVA+       +  + V  + GG   + Q K ++
Sbjct: 69  ENFEN----LEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR++D   R  L +N+++  ++DEAD ML+MGF+  I+ I +     ++ 
Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM +E+ KV++N ++  + + V +   T +  E      +    +        + 
Sbjct: 185 LFFSATMPEEIMKVAKNHMKEYEVLAVKSRELTTDLTEQ---IYFEVNERDKFEALCRII 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  GIIFC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I ++V
Sbjct: 242 DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T +  ++ + +  I
Sbjct: 302 ATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 361

Query: 361 EKLIEKKV 368
           +K ++K++
Sbjct: 362 QKAVKKEI 369


>gi|306825666|ref|ZP_07459005.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432027|gb|EFM35004.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 518

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 144/373 (38%), Positives = 226/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS +++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFDLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIRT---EEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +IE L++DEAD ML+MGF+  I+ I S VP +RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPDSRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T + ++  ++    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTDLVDQYYIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|115403005|ref|XP_001217579.1| hypothetical protein ATEG_08993 [Aspergillus terreus NIH2624]
 gi|121734401|sp|Q0CBE1|DHH1_ASPTN RecName: Full=ATP-dependent RNA helicase dhh1
 gi|114189425|gb|EAU31125.1| hypothetical protein ATEG_08993 [Aspergillus terreus NIH2624]
          Length = 509

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 125/418 (29%), Positives = 200/418 (47%), Gaps = 12/418 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     + +    LIL PTRELA Q +   +  GK+  + V +  GG        +L 
Sbjct: 107 ERINPKSTKTQA---LILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRLN 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 164 DAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F     R           T+            K+       L 
Sbjct: 224 MLFSATFPLIVKS----FKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q+ R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKI 399

Query: 361 EKLIEKKVDWLNGDLSSL-----NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           E+ +  ++  +  ++        +P      I+  +   +   +P      DRR  N+
Sbjct: 400 EQELGTEIQPIPQNIDKKLYVYDSPDTIPRPISNPSQPPQATGMPSGQHIGDRRHNNH 457


>gi|91782534|ref|YP_557740.1| putative ATP-dependent RNA helicase 2 [Burkholderia xenovorans
           LB400]
 gi|91686488|gb|ABE29688.1| Putative ATP-dependent RNA helicase 2 [Burkholderia xenovorans
           LB400]
          Length = 491

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 163/373 (43%), Positives = 229/373 (61%), Gaps = 8/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+P ++ AV ++GY  PTPIQ + IP+VL   D+ G AQTGTGKTASF LP++ 
Sbjct: 12  TFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPIIQ 71

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L    +    P        IL PTRELA QVA N + Y K+  L  A++ GG+    Q+
Sbjct: 72  RLLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQS 131

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++L RG ++LI TPGR+LDH  +    +  ++ILV+DEADRMLDMGF+P +Q I +L+P 
Sbjct: 132 EQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT + E++K++  +L++P+ IEV   +STA  +                +  
Sbjct: 192 ERQTLLFSATFSGEIKKLAATYLRDPQTIEVARSNSTATNVRQIVYEVAEGDKTGAVVQL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +  +K  I+FCN K     L  SLE+ G    AIHG+  Q  RM+ L  FK G I
Sbjct: 252 ---IRERGLKQVIVFCNSKIGASRLSRSLERDGVIATAIHGDRSQNERMQALDAFKRGEI 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K 
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368

Query: 357 IDAIEKLIEKKVD 369
           +  IEKLI++ ++
Sbjct: 369 LADIEKLIKRPLE 381


>gi|322391693|ref|ZP_08065161.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780]
 gi|321145504|gb|EFX40897.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780]
          Length = 523

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 146/373 (39%), Positives = 224/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  ++  V  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFNLSADLLAEVDKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIRT---EEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + ++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQHVETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ PK +++     T E ++  ++    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPKHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|156977695|ref|YP_001448601.1| hypothetical protein VIBHAR_06483 [Vibrio harveyi ATCC BAA-1116]
 gi|156529289|gb|ABU74374.1| hypothetical protein VIBHAR_06483 [Vibrio harveyi ATCC BAA-1116]
          Length = 527

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 178/465 (38%), Positives = 257/465 (55%), Gaps = 21/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G   R    R L+L PTRELAAQV +N   Y ++  LT A++ GG+    Q  +L
Sbjct: 61  ERLSNGPRVRSNHIRALVLTPTRELAAQVQENVFMYSRHLPLTSAVVFGGVKINPQMLRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +N+  +  + +E+LV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLYNQNAVKFDQLEMLVLDEADRMLDMGFIRDIRKILELLPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT ++E++ +++  + NP  I VN  +STA T+E C         KK A +   L
Sbjct: 181 NLLFSATFSNEIRDLAKGLVNNPVEISVNPANSTARTVEQCIYPADV---KKKAPMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  ++F   K     L   L  Q  +  AIHGN  Q +R K L++FK G ++++
Sbjct: 238 IKDGDWKQVLVFTKTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV   +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFA 357

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKIDI---------------AQHNHARKNNPIPQK 402
           IE+LI++ +    L G   +   P  K+D                A+  + +        
Sbjct: 358 IERLIQQLLPRKELEGYAPTNVLPESKLDTRPIKPKKPKKPKKPKAEGENGQTAEKKNSD 417

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
                RR+ N  ++      K  +  +   +  ++  A S G + 
Sbjct: 418 GNNKPRRRFNSDNKNDKGENKSGKAGAGKPKGNRDGQARSNGKQS 462


>gi|152994240|ref|YP_001339075.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150835164|gb|ABR69140.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 418

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 157/421 (37%), Positives = 235/421 (55%), Gaps = 7/421 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  V + GY  PTPIQ+  IP VL + D+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFASLGLHQDIIQQVTELGYTTPTPIQLAAIPAVLAKKDLMAGAQTGTGKTAAFALPLL 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 K     +  + L+L PTRELA QV  +F KY     +   +  GG     Q   
Sbjct: 61  HQILQAKDSNTTKGIQVLVLTPTRELAQQVHASFLKYSAKLPIQSVVAYGGASINMQLDA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+L+   +  + ++ ++ LV+DEADRMLDMGFI  IQ I   +P +R
Sbjct: 121 LRQGCDVLVATPGRLLELIMKNLIDLSKLQTLVLDEADRMLDMGFIIDIQRILKKLPKSR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSAT  DE+  +S+  L++P+ IEVN+ ++TA  +E    A               
Sbjct: 181 QTLFFSATFNDEIFALSKTLLKDPQLIEVNSRNTTATQVEQTIYAVDQDRKSALLSFL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  +  +IF   K+    L   +EK G +  +IHG+  Q +R ++L++FK G ++ 
Sbjct: 239 -IGSKNWQQVLIFTRTKQGADELAKEMEKDGIATQSIHGDKSQGARDRVLADFKAGKVRA 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + +V N ++P  AE+YIHRIGRTGRAG  G A +LV++++   + 
Sbjct: 298 LVATDVAARGIDIEQLQYVVNHELPYNAEDYIHRIGRTGRAGSTGLAISLVSEKERYLLT 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEKL+ ++  ++   L    P L K++ AQ         +  K+ G    K    +++ 
Sbjct: 358 DIEKLVGEQ--FVPQWLPGFEPDLNKVNNAQKKREPSKKELRAKALGIHPSKDKKPNKRR 415

Query: 419 H 419
            
Sbjct: 416 R 416


>gi|120601130|ref|YP_965530.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           vulgaris DP4]
 gi|120561359|gb|ABM27103.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4]
          Length = 532

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 145/370 (39%), Positives = 214/370 (57%), Gaps = 7/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L  +++ A+ + G+ +P+PIQ   IP +L+  DV G AQTGTGKTA+F LP+L 
Sbjct: 6   SFKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLPLLQ 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            ++     V+    L+L PTRELA QVA+      K+   + +  + GG P E Q   L 
Sbjct: 66  RIDAADRSVQ---ALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASALR 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGRILDH NRG L +  + + V+DEAD MLDMGF   I+ I S +P   Q+
Sbjct: 123 RGAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWVQS 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM D + +++  FL+ P+ + V     T    E  +                   
Sbjct: 183 AFFSATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCRI---F 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L  +L+++G    A+HG+++Q  R +++S F+ G I ++V
Sbjct: 240 DAYIPRKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV  V NFD+PN  E Y+HRIGRTGRAGR G+AF+  A  D+  +  I
Sbjct: 300 ATDVAARGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGQAFSFAAGRDVYKLRDI 359

Query: 361 EKLIEKKVDW 370
           +++   ++D 
Sbjct: 360 QRVTGSRIDR 369


>gi|114563961|ref|YP_751475.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114335254|gb|ABI72636.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 423

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 153/427 (35%), Positives = 233/427 (54%), Gaps = 13/427 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL P ++ AV  +GY   TP+Q   IPL L   DV   A+TGTGKTA+F LP+L
Sbjct: 1   MSFTSLGLPPLLLDAVNQSGYQTATPVQQAVIPLALDGRDVLASAETGTGKTAAFALPLL 60

Query: 61  TILEKGRARVRMPRTL----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           + L        +P       I+ PTRELA Q+  N  KY +  NLT   + GG     Q 
Sbjct: 61  SHLMNQDHSDLLPANRLRALIMTPTRELAIQIEQNLVKYSQFINLTSLAVYGGASINPQR 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K LE+G D+L+ TPGR+ D   + +L ++ +  LVIDEADRMLD+GF+  I+ +  L+  
Sbjct: 121 KALEQGIDILVATPGRLFDIIGQHELDLSFVTHLVIDEADRMLDLGFVKDIEKVKRLIAR 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             QT++FSAT +++++ ++   L NP+ + V T ++ A          Y   +++ A L 
Sbjct: 181 QHQTMMFSATFSEDVKTLAAKMLNNPEYVHVETQTTAANV----VQQVYQVDTRRKAELL 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L  +   +  ++F ++K+   +L   L   G      HG+  Q +R + L  FK G +
Sbjct: 237 SELIGKHNWQQVMVFTSRKETADHLYRELSLDGIKSSVFHGDKSQGARNRALEEFKTGQL 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++A+DLAARGLDI  +  V NF++P   E+YIHRIGRTGRAG  G+A +LV+ ++++ 
Sbjct: 297 RVLIATDLAARGLDIQALPRVINFELPEECEDYIHRIGRTGRAGLGGEAISLVSPQELEL 356

Query: 357 IDAIEKLIEKKVDWL--NGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKK 411
           + AIE+LIE+ +  L   G       P    D+A        +     P ++     RK 
Sbjct: 357 LGAIEQLIEQSLPILVPTGYEEGAPLPARYRDVAAEKPKKVLKYKRGKPSQTDVKPTRKG 416

Query: 412 NYSSQKS 418
            Y+  K 
Sbjct: 417 KYAKAKK 423


>gi|257093622|ref|YP_003167263.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046146|gb|ACV35334.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 491

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 153/376 (40%), Positives = 231/376 (61%), Gaps = 8/376 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL+P ++ A+ D GY +PTPIQ + IP+VL   D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MRFDDLGLAPDLLRAIADQGYAEPTPIQAQAIPIVLAGQDLMGGAQTGTGKTAAFTLPLL 60

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             +    +    P        +L PTRELA QV ++   Y K   L  A + GG+  + Q
Sbjct: 61  QRILPFASASLSPARHPVRVLMLAPTRELAIQVHESVRGYSKYVPLRSACVYGGVDIKPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             ++  G +VL+ TPGR+LD   +  L   +++ LV+DEADRMLDMGFIP +  I +L+P
Sbjct: 121 IAEIRLGVEVLVATPGRLLDLIEQRCLNFGSVQALVLDEADRMLDMGFIPDVTRIINLLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ+LLFSAT ++E++K+++  L++P  IEV   ++ +ETI H      A+  +   + 
Sbjct: 181 QQRQSLLFSATFSEEIKKLADRMLKSPVLIEVARRNTVSETITHRVHPVAAEAKRALLVK 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                        ++F   K     L   L++ G +  +IHG+  Q+ R+K L  FK+G+
Sbjct: 241 LL---RSSDFNQVLVFTRTKIETNKLARELQRAGIAADSIHGDKSQQERLKALEAFKDGS 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGLDI ++ HV NF++P   E+YIHRIGRTGRAG+ G A +LV+  ++ 
Sbjct: 298 VLVLVATDVAARGLDIDELPHVINFELPRTPEDYIHRIGRTGRAGKPGTAVSLVSASEVP 357

Query: 356 HIDAIEKLIEKKVDWL 371
           ++  IEKLI  +V+ +
Sbjct: 358 YLVDIEKLIRIQVEQI 373


>gi|198242882|ref|YP_002217254.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197937398|gb|ACH74731.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326625031|gb|EGE31376.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 629

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 220/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + ++ 
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILT 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|260775423|ref|ZP_05884320.1| ATP-dependent RNA helicase SrmB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608604|gb|EEX34769.1| ATP-dependent RNA helicase SrmB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 410

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 130/371 (35%), Positives = 203/371 (54%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA+L L   ++ A+ + GY +PT IQ + IP  L   D+   A TGTGKTA+FVLP L 
Sbjct: 4   NFAELELDENLLVAIEEMGYTRPTQIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    R   P  + IL PTRELA QVAD      KN NL +  + GG+ ++     L 
Sbjct: 64  YLQDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTNLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR++++    +     IE L++DEADRMLDMGF P +  ++S   + +QT
Sbjct: 124 KTQDIVVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSSECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     ++  + + L+ P  I+        + I   +        K         
Sbjct: 184 LLFSATLEGKGVEGFTADLLKEPAEIDAEPSRRERKKIAQWYHRADDMAHKLA---LLKT 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D  +  I+F   ++ +  L   LEK       I G + Q  R   ++ F++GT+ ++
Sbjct: 241 IINDQAERSIVFLKTRERLAELRVELEKAQIPCAWIQGEMPQDRRNNAIARFRDGTVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A +LV   D   +D 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRSADVYLHRIGRTARAGKKGNAISLVEAHDQTMMDR 360

Query: 360 IEKLIEKKVDW 370
           + + +++++  
Sbjct: 361 VARYVKEEIKE 371


>gi|84468282|dbj|BAE71224.1| putative replication protein A1 [Trifolium pratense]
          Length = 440

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 143/438 (32%), Positives = 228/438 (52%), Gaps = 12/438 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL  ++V A  + G+  P  IQI+ IPL LQ  DV G+AQTG+GKT +F LP+L 
Sbjct: 10  SFKDLGLPEELVEACDNLGWKTPLKIQIEAIPLALQGKDVIGLAQTGSGKTGAFALPILH 69

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R       +L PTRELA Q+++ FE  G    +  A+L+GGI    Q+ K+ +
Sbjct: 70  ALLQAP-RPNHFFACVLSPTRELAIQISEQFEALGSGIGVKSAVLVGGIDMVQQSIKIAK 128

Query: 122 GADVLICTP-GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TP   +    N     ++ ++ LV+DEADR+L+  F   +  I  ++P  R+T
Sbjct: 129 HPHIIVGTPGRVLDHLKNTKGFSLSKLKYLVLDEADRLLNEDFEESLNEILGMIPRERRT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT +++K+    L+NP +IE +T  ST +T+           +K+       + 
Sbjct: 189 FLFSATMTKKVEKLQRVCLRNPVKIEASTKYSTVDTL---KQQYRFLPAKRKDCYLVYIL 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      ++F         L   L   G     I+G++ Q  R+  L+ FK G   +++
Sbjct: 246 TEMAGSTSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNILL 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR G A +LV + +++    I
Sbjct: 306 CTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQI 365

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EKLI KK+         +    E++  A+   A K   + +      RR +  S     I
Sbjct: 366 EKLIGKKLPEYPAQEEEVLLLEERVSEAKRLAATK---MKESGGKKKRRGEGDSGDDEDI 422

Query: 421 ----PLKESEKISKLQQD 434
                LK+ +   K ++ 
Sbjct: 423 DKYFGLKDRKSSKKFRRK 440


>gi|294828452|ref|NP_714230.2| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str.
           56601]
 gi|293386306|gb|AAN51248.2| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 516

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 143/400 (35%), Positives = 236/400 (59%), Gaps = 12/400 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++L LS ++  A+L+ G+ + +PIQ + IP++L+  D+ G AQTGTGKTA+F +P +
Sbjct: 4   LKFSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTI 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
            +LE      +  + LIL PTREL  QV++ F K  K       + I  G   E Q + L
Sbjct: 64  ELLEV---ESKHLQALILCPTRELVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLRAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   ++I TPGR++DH  RG + ++ I+I+V+DEAD MLDMGF   ++ I    P  RQ
Sbjct: 121 RKNPQIVIATPGRMMDHMRRGSIHLDEIKIVVLDEADEMLDMGFREDMEFILKDTPADRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++FSATMTD++  + + F  +P+ I     +    +        Y             L
Sbjct: 181 TIMFSATMTDDVLTLMKKFQNHPQII---DVTHQKLSAPKIEQIYYEIQENAKGEALARL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +K  ++FCN K  V  +   L+ +G+   A+HG+++Q+ R K++S F++G+I+++
Sbjct: 238 IEYRNVKLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMSGFRKGSIEIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A RG+D+ +V  VFN+D+P   E+Y+HRIGRTGRAG+ G AF+ +  + I ++  
Sbjct: 298 VATDVAGRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKK 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           IE++   K++   G + +L+  LE+  I  H++  K   I
Sbjct: 358 IERINGIKIEA--GKIPTLDD-LEETKI--HSYTSKVRSI 392


>gi|253687917|ref|YP_003017107.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251754495|gb|ACT12571.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 477

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 161/441 (36%), Positives = 247/441 (56%), Gaps = 17/441 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGLS  ++ A+ + GY  PTP+Q + IP+VL+  D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFDSLGLSADILRAIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 60  ----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                   +      R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    Q
Sbjct: 61  QLLNSREAQNKGKGRRPVRALILTPTRELAAQIDENVKAYSKYLRLRSLVVFGGVSINPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P
Sbjct: 121 MMKLRGGVDILVATPGRLLDLEHQNAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E +         +  ++    
Sbjct: 181 AKRQNLLFSATFSDEIKALANKLLTNPASVEVVRRNTPSELVTQHVHFVDKRRKRELLSQ 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 ++  +  ++F   K    +L   LEK G +  AIHGN  Q +R + L+NFK+G+
Sbjct: 241 L---IGENNWQQVLVFTRTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANFKDGS 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K
Sbjct: 298 IRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCVDEHK 357

Query: 356 HIDAIEKLIEKKVDWL-----NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR-- 408
            +  IE+L+++++  +       D S    P+              N  P+  +G  R  
Sbjct: 358 LLRDIERLLKREIPRIAIEGYEPDPSIKAEPIVNGRQGNRGGGGARNGSPRAQSGAPRGQ 417

Query: 409 --RKKNYSSQKSHIPLKESEK 427
             R +  S ++S    ++  K
Sbjct: 418 SERSQGQSERRSADGNRQPRK 438


>gi|227495476|ref|ZP_03925792.1| superfamily II helicase [Actinomyces coleocanis DSM 15436]
 gi|226831023|gb|EEH63406.1| superfamily II helicase [Actinomyces coleocanis DSM 15436]
          Length = 616

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 141/373 (37%), Positives = 215/373 (57%), Gaps = 9/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L   V+ A+ + G+  PTPIQ + IP +L+  D+ GIAQTGTGKTA+F LPML 
Sbjct: 6   TFADLNLPENVLSAITEMGFETPTPIQEQAIPHLLEGRDIVGIAQTGTGKTAAFGLPMLA 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++ G   V+     +L PTRELA Q A   E +  +      + +  G  +  Q K L+
Sbjct: 66  HIDPGFNAVQAI---VLAPTRELAMQSATAIESFAAHMPKVKVVTVYGGASYTPQIKGLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGR++D   +G L +NN+ +LV+DEAD ML MGF   ++ I + +P + + 
Sbjct: 123 SGAQVVVGTPGRVIDLIEKGALKLNNVSVLVLDEADEMLRMGFAEDVETIAASMPESGKR 182

Query: 181 LL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +   FSATM D +Q+V++  L +P RIEV   SST E I   +        K        
Sbjct: 183 ITALFSATMPDFIQRVADQHLTDPVRIEVARQSSTVENIHQTYAVVPF---KHKLGALGR 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +       I+F   + +   +   +  +GF+  AI G++ Q  R +I+S  ++G++ +
Sbjct: 240 VLATRDEDAAIVFVRTRVDADEVAVDMATRGFTAAAISGDVSQNERERIVSRLRDGSLDV 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  +G V NFDVP   E Y+HR+GRTGRAGR G++ T    ++   + 
Sbjct: 300 LVATDVAARGLDVERIGLVINFDVPRETEAYVHRVGRTGRAGRAGRSLTFFTPKEQFRLR 359

Query: 359 AIEKLIEKKVDWL 371
            IEKL   K++ +
Sbjct: 360 QIEKLTGTKMEEI 372


>gi|224585078|ref|YP_002638877.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224469606|gb|ACN47436.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 626

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|207858530|ref|YP_002245181.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206710333|emb|CAR34691.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
          Length = 629

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|205354184|ref|YP_002227985.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205273965|emb|CAR38970.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326629305|gb|EGE35648.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 618

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|302036818|ref|YP_003797140.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
 gi|190343232|gb|ACE75620.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
 gi|300604882|emb|CBK41215.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
          Length = 431

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 142/372 (38%), Positives = 209/372 (56%), Gaps = 6/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+SP ++  +  AG+ +PT IQ + IP  L   DV G AQTGTGKTA+FV+PM  
Sbjct: 8   SFDSLGVSPTLLRNLTKAGFAEPTAIQAQAIPHALAGRDVLGCAQTGTGKTAAFVIPM-- 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +          PR LIL PTRELA Q+    +  G++  L    ++GG   +AQ + L +
Sbjct: 66  LERLSGTPKGQPRALILAPTRELAIQIQATIDTLGRDLQLFATTVVGGADMQAQVRGLRQ 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+LDH   G + +  + ILV+DEADRMLDMGF   I  I   +P  RQTL
Sbjct: 126 RPDIIVATPGRLLDHMWNGTISLLAMSILVLDEADRMLDMGFAQQINQILDAMPEERQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM ++L ++++  +++P R+ V   ++TA+ +      T         +       
Sbjct: 186 LFSATMPNDLARLAQASVKDPVRVMVTKSATTADGVTQAVHHTTHDRKNGLLMSLL---- 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q      ++F   K     L + L+  G  V  +HG      R   L  F+ GT +++VA
Sbjct: 242 QSESDTVLVFARTKHRADRLGNLLDSAGHRVAVLHGGRTLPQRRAALEGFRRGTYRVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ ++ HV N+DVPN  E+Y+HRIGRT R    G+A T V  ED + + AIE
Sbjct: 302 TDIAARGIDVANIAHVINYDVPNCPEDYVHRIGRTARMRTTGRATTFVTSEDQEQLRAIE 361

Query: 362 KLIEKKVDWLNG 373
           +L+ + V    G
Sbjct: 362 RLLGQAVPRAEG 373


>gi|168463497|ref|ZP_02697414.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195633290|gb|EDX51704.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 629

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|194446047|ref|YP_002042538.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194404710|gb|ACF64932.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 629

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|16421839|gb|AAL22152.1| cysteine sulfinate desulfinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|261248446|emb|CBG26283.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|332990138|gb|AEF09121.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 646

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 24  TFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLN 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 84  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 140

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 141 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 200

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 201 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 258 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 318 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 377

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 378 ERTMKLTIPEVELPNAEL 395


>gi|62129424|gb|AAX67127.1| cysteine sulfinate desulfinase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
          Length = 651

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 29  TFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLN 88

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 89  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 145

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 146 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 205

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 206 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 262

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 263 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 322

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 323 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 382

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 383 ERTMKLTIPEVELPNAEL 400


>gi|39546364|ref|NP_462193.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|56415212|ref|YP_152287.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|161616286|ref|YP_001590251.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|162139541|ref|YP_218208.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167552072|ref|ZP_02345825.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167990155|ref|ZP_02571255.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168231889|ref|ZP_02656947.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168237981|ref|ZP_02663039.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168243114|ref|ZP_02668046.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168262709|ref|ZP_02684682.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168819651|ref|ZP_02831651.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194447369|ref|YP_002047310.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194470855|ref|ZP_03076839.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194736232|ref|YP_002116230.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197249912|ref|YP_002148207.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197265213|ref|ZP_03165287.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197364142|ref|YP_002143779.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|204928320|ref|ZP_03219520.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|238910075|ref|ZP_04653912.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|56129469|gb|AAV78975.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161365650|gb|ABX69418.1| hypothetical protein SPAB_04091 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194405673|gb|ACF65892.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194457219|gb|EDX46058.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194711734|gb|ACF90955.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197095619|emb|CAR61187.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197213615|gb|ACH51012.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197243468|gb|EDY26088.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197289140|gb|EDY28509.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204322642|gb|EDZ07839.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205323189|gb|EDZ11028.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205331110|gb|EDZ17874.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205333912|gb|EDZ20676.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205337772|gb|EDZ24536.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205343559|gb|EDZ30323.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205348425|gb|EDZ35056.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|267995476|gb|ACY90361.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|312914306|dbj|BAJ38280.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320087727|emb|CBY97491.1| Cold-shock DEAD box protein A homolog; ATP-dependent RNA helicase
           deaD homolog [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225964|gb|EFX51018.1| Cold-shock DEAD-box protein A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322615285|gb|EFY12206.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618356|gb|EFY15247.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622839|gb|EFY19683.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626839|gb|EFY23636.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631408|gb|EFY28168.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635325|gb|EFY32039.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322643460|gb|EFY40023.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647104|gb|EFY43605.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648907|gb|EFY45352.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655099|gb|EFY51410.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657702|gb|EFY53970.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664198|gb|EFY60396.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667481|gb|EFY63643.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674729|gb|EFY70821.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675638|gb|EFY71711.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682274|gb|EFY78297.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684877|gb|EFY80875.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322716278|gb|EFZ07849.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323191728|gb|EFZ76980.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199035|gb|EFZ84132.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204265|gb|EFZ89274.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207612|gb|EFZ92559.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211335|gb|EFZ96179.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214723|gb|EFZ99472.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323224056|gb|EGA08349.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230295|gb|EGA14414.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233271|gb|EGA17365.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239308|gb|EGA23358.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242441|gb|EGA26467.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246951|gb|EGA30917.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323254116|gb|EGA37936.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255233|gb|EGA39010.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262696|gb|EGA46252.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264006|gb|EGA47514.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269392|gb|EGA52847.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 629

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|45659052|ref|YP_003138.1| ATP-dependent RNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45602298|gb|AAS71775.1| ATP-dependent RNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 521

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 143/400 (35%), Positives = 236/400 (59%), Gaps = 12/400 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++L LS ++  A+L+ G+ + +PIQ + IP++L+  D+ G AQTGTGKTA+F +P +
Sbjct: 9   LKFSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTI 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
            +LE      +  + LIL PTREL  QV++ F K  K       + I  G   E Q + L
Sbjct: 69  ELLEV---ESKHLQALILCPTRELVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLRAL 125

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   ++I TPGR++DH  RG + ++ I+I+V+DEAD MLDMGF   ++ I    P  RQ
Sbjct: 126 RKNPQIVIATPGRMMDHMRRGSIHLDEIKIVVLDEADEMLDMGFREDMEFILKDTPADRQ 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++FSATMTD++  + + F  +P+ I     +    +        Y             L
Sbjct: 186 TIMFSATMTDDVLTLMKKFQNHPQII---DVTHQKLSAPKIEQIYYEIQENAKGEALARL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +K  ++FCN K  V  +   L+ +G+   A+HG+++Q+ R K++S F++G+I+++
Sbjct: 243 IEYRNVKLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMSGFRKGSIEIL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A RG+D+ +V  VFN+D+P   E+Y+HRIGRTGRAG+ G AF+ +  + I ++  
Sbjct: 303 VATDVAGRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKK 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           IE++   K++   G + +L+  LE+  I  H++  K   I
Sbjct: 363 IERINGIKIEA--GKIPTLDD-LEETKI--HSYTSKVRSI 397


>gi|328676918|gb|AEB27788.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida Fx1]
          Length = 442

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 152/403 (37%), Positives = 237/403 (58%), Gaps = 8/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+  +  A+   GY KPTPIQ + IP+VL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MKFSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  +  +++   V+DEADRMLDMGFI  ++ I  L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++  FL NP+ +  +  ++T + I                +     
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   ++F   K     +   L   G S  AIHGN  Q +R K L++FK   I ++
Sbjct: 238 IKDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+PN AE+Y+HRIGRTGRAG+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           IE LI   +  + L G  ++ N P+  +  +    A+K + + 
Sbjct: 358 IEHLIGHLLPREELEGFEATHNVPITSM--SHKTKAKKIDEVK 398


>gi|313893353|ref|ZP_07826927.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313442122|gb|EFR60540.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 432

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 146/438 (33%), Positives = 234/438 (53%), Gaps = 10/438 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+  +++ A+   G  +PTPIQ ++IP+V + +DV   AQTGTGKT +F+LP+L 
Sbjct: 3   SFKTLGVCDELIQALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPILQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +      V   + LI+ PTREL  Q+AD  ++ G   N+ +  LIGG   EAQ ++L R
Sbjct: 63  RVHT---DVHQEQVLIIAPTRELIKQIADEAKEIGAILNVDILPLIGGKTIEAQLQQLGR 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+LDH  RG L ++ I  +V+DEAD+ML MGF+P I+++ S     RQ L
Sbjct: 120 RPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIESLISQTDANRQLL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ D+++ +++ ++  P  +       T E+I+        +           +  
Sbjct: 180 LFSATIPDKIRNLAKAYMSKPVSVTAEGKHVTLESIDQRVYMMNPEEK---TERLIKMIE 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I+FCN+++  V L + L   G ++  +HG++ Q  R +IL +F +   Q++VA
Sbjct: 237 EDNPFLAIVFCNKREGAVRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI  + HV+N+DVP   + YIHRIGRTGRAG  G A T    +D   +  IE
Sbjct: 297 TDIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGVAVTFATPQDESWLRRIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           + I+  +     D         K + +      K    P+ S+ +   K      + H  
Sbjct: 357 RAIQATLTKYTKD----GQIKTKGNASAAPKRSKATSKPKVSSSYQATKAKAHKARGHKG 412

Query: 422 LKESEKISKLQQDIQEND 439
               ++ +   Q  +   
Sbjct: 413 SNTRQRRTSTSQTGRRGK 430


>gi|37676819|ref|NP_937215.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|37201363|dbj|BAC97185.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 509

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 181/469 (38%), Positives = 266/469 (56%), Gaps = 21/469 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP +L+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIQEKGYDTPSPIQLQAIPAILEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L KG   R    R LIL PTRELAAQV +N   Y ++ +L  A++ GG+    Q  +L
Sbjct: 61  ERLAKGPRVRANHIRALILTPTRELAAQVQENVFMYSRHLDLNSAVVFGGVKINPQMLRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +++  +  + +E+LV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLYSQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++++++  + NP  I VN  +STA T+E C         KK   +   L
Sbjct: 181 NLLFSATFSDEIRELAKGLVNNPIEISVNPANSTARTVEQCIYPADV---KKKPAMLAKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  ++F   K     L   L  QG +  AIHGN  Q +R K L++FK G ++++
Sbjct: 238 IKDGDWRQVLVFTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGDVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV   +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGETGKAISLVCALEAPELFA 357

Query: 360 IEKLIEKKVDW--LNGDLSSLNPPLEKIDI------AQHNHARKNNPIPQKSTGFDRRKK 411
           IE+LI++ +    L G   +   P  K+D             +   P  + +      K 
Sbjct: 358 IERLIQELLPRKALEGYAPTNAVPESKLDTRPIKPKKPKKPKKPKAPNAEAAGSDASSKG 417

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQ-----ENDADSLGFR----GNMPA 451
           N  ++ +  P  ++    K ++         ND+ + G R    G+ PA
Sbjct: 418 NQKAKAADKPQGQNRGNGKAKRQFSAPKEGNNDSANKGKRPNTKGSKPA 466


>gi|315633344|ref|ZP_07888635.1| ATP-dependent RNA helicase SrmB [Aggregatibacter segnis ATCC 33393]
 gi|315477844|gb|EFU68585.1| ATP-dependent RNA helicase SrmB [Aggregatibacter segnis ATCC 33393]
          Length = 442

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 128/366 (34%), Positives = 207/366 (56%), Gaps = 2/366 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            FAD  L+P+++ A+   GY +PT IQ +TIP  ++  DV G A TGTGKTA+F+LP + 
Sbjct: 6   QFADFDLAPELLNALQKKGYQRPTAIQQETIPAAMEGFDVLGSAPTGTGKTAAFLLPAIQ 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVA+  E+      L++A + GG+ ++   +   
Sbjct: 66  HLLDYPRRKPGAPRVLILTPTRELAMQVAEQAEELACFTKLSIATITGGVAYQNHGEIFN 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR+L +          +EIL+ DEADRML MGF    + I++   + +QT
Sbjct: 126 KNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKISAETRWRKQT 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  +L +   +   N     ++   S  E  +      +A  ++    L     
Sbjct: 186 LLFSATLEGDLLEDFADRTLNEPVK-IDAEPSRRERKKIQQWYYHADSNEHKFKLLARFI 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+ +  GI+F  ++++V  L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 245 EQEQVSKGIVFVRRREDVRELAENLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGVVTVLV 304

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D++ARG+DI DV H+ NFD+P  A+ Y+HRIGRT RAG+ G A + V   D + +  I
Sbjct: 305 STDVSARGIDIDDVSHIMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYRLLGKI 364

Query: 361 EKLIEK 366
           ++  ++
Sbjct: 365 KRYTQE 370


>gi|228474931|ref|ZP_04059660.1| cold-shock DEAD box protein A [Staphylococcus hominis SK119]
 gi|314935968|ref|ZP_07843318.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           hominis subsp. hominis C80]
 gi|228271163|gb|EEK12543.1| cold-shock DEAD box protein A [Staphylococcus hominis SK119]
 gi|313655974|gb|EFS19716.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           hominis subsp. hominis C80]
          Length = 503

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 138/436 (31%), Positives = 229/436 (52%), Gaps = 17/436 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S K V  + + G+ +PTPIQ ++IP  L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDKTVKTLEEMGFKEPTPIQKESIPYTLEGKDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +          + LIL PTRELA QVA+   ++ +  N+ V  + GG+P + Q K L+R
Sbjct: 63  KVVG----KSGVQALILAPTRELAMQVAEQLREFSRGQNIQVVTVFGGMPIDRQIKALKR 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L  N+I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     +     +  K           
Sbjct: 179 MLFSATMPKAIQTLVQQFMKSPQIVKTMNNEMSDPQIDEYYTIVKELEKFDTFT--NFLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 237 VHQPELAIVFGRTKRRVDELTSALLTKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 297 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           ++ +++       + +L PP  K    +   AR+ +   +      R  ++   + S   
Sbjct: 357 EVNDRR-------MKALRPPHRK----EVLKAREEDIKDKVKNWMSRESEDRLKRISSEL 405

Query: 422 LKESEKISKLQQDIQE 437
           L+E +    +   +QE
Sbjct: 406 LEEYDSTELVASLLQE 421


>gi|149184|gb|AAA61345.1| RNA helicase [Klebsiella pneumoniae]
          Length = 659

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 133/378 (35%), Positives = 222/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 23  TFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLN 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     +R P+ L+L PTRELA QVA+   ++ K+      + +  G  ++ Q + L 
Sbjct: 83  NIDP---ELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALR 139

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 140 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 199

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   Y     +         
Sbjct: 200 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEA---LVRFL 256

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 257 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQALERLKDGRLDILI 316

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 317 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 376

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 377 ERTMKLTIPEVELPNAEL 394


>gi|8928554|sp|P33906|DEAD_KLEPN RecName: Full=Cold-shock DEAD box protein A; AltName:
           Full=ATP-dependent RNA helicase deaD
          Length = 643

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 133/378 (35%), Positives = 222/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     +R P+ L+L PTRELA QVA+   ++ K+      + +  G  ++ Q + L 
Sbjct: 67  NIDP---ELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   Y     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQALERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|317127874|ref|YP_004094156.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315472822|gb|ADU29425.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 481

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 141/425 (33%), Positives = 231/425 (54%), Gaps = 12/425 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  LS ++  A+    Y KPT +Q + IPL + + D+   +QTG+GKTA+F +P+  
Sbjct: 5   SFDEYQLSEEIHRAITLMKYEKPTEVQREVIPLAMNKEDLVVKSQTGSGKTAAFGIPICE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++     +   P+ LIL PTRELA QV ++    G+   +    + G  PF  Q ++L++
Sbjct: 65  MMNWEERK---PQALILTPTRELAVQVREDIANIGRFKLIKALAVYGKEPFAKQKEELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+LDH  R  L ++ I+ L++DEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 RNHVVVGTPGRMLDHIERETLALDEIKYLILDEADEMLNMGFINDVEEIMKALPADRVTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +++ +   +++NP+ IE+ +   T  +IEH  +       K    L + +  
Sbjct: 182 VFSATLPKDVEDLCHKYMENPQHIEIASSGITTASIEHHLMEVNP---KGKLALLKDITV 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFCN K++V  +   LE+  +S   +HG ++Q  R  ++  FK G  + +VA
Sbjct: 239 VENPDSCIIFCNTKEHVDTVFSELERANYSCEKLHGGLEQEDRFSVMDGFKRGNFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ +V  V N+DVP   E Y+HR GRTGR+G  G+A T V   D K++ AIE
Sbjct: 299 TDVAARGIDVDNVTLVINYDVPMEKEGYVHRTGRTGRSGNKGRAITFVTPNDGKYLKAIE 358

Query: 362 KLIEKKVDWLNG----DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           K I   +  +      D+S      E  +        +NN   + S    +   N   +K
Sbjct: 359 KYIGFSIPVMEAPSEKDVSGGKSAFE--EKLSGRRVVRNNKTARVSKDIMKLHFNGGKKK 416

Query: 418 SHIPL 422
              P+
Sbjct: 417 KLRPV 421


>gi|62261419|gb|AAX77988.1| unknown protein [synthetic construct]
          Length = 604

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 150/433 (34%), Positives = 242/433 (55%), Gaps = 14/433 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGL+  +V  V+  GY  PTPIQ   IP +L   DV G AQTGTGKTA+F LP++ 
Sbjct: 34  DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 93

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++    R R P+ L+L PTRELA QVA+ FE + KN        I  G  + +Q + L+
Sbjct: 94  NMDLAS-RDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 152

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ T GR++DH  +G L ++N+  LV+DEAD ML MGFI  ++ + S V    Q 
Sbjct: 153 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQCQR 212

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++  + E +L+NP +I+V   + TA T+   F+                 +
Sbjct: 213 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETE 272

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +   IIF   K + + +  +L+  G+ V AI+G++ Q  R  I+  F+     ++V
Sbjct: 273 ETDGV---IIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 329

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+  + HV N+D+PN  + Y+HRIGRTGRAGR G + +LV  ++++ +  +
Sbjct: 330 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 389

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ--HNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           E+     +  +        P  +++  ++  H  AR  + +  K+   D+ K+  +S + 
Sbjct: 390 ERFTGSPMQEV------FMPSAKELAQSRVEHFKARIISAL-DKNKSLDKYKEIITSIRD 442

Query: 419 HIPLKESEKISKL 431
            + L   E ++ L
Sbjct: 443 ELQLDSEELLAGL 455


>gi|56708511|ref|YP_170407.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670982|ref|YP_667539.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457676|ref|ZP_03666149.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371138|ref|ZP_04987140.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875360|ref|ZP_05248070.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56605003|emb|CAG46104.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321315|emb|CAL09487.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569378|gb|EDN35032.1| hypothetical protein FTBG_00898 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841359|gb|EET19795.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159724|gb|ADA79115.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 569

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 150/433 (34%), Positives = 242/433 (55%), Gaps = 14/433 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGL+  +V  V+  GY  PTPIQ   IP +L   DV G AQTGTGKTA+F LP++ 
Sbjct: 8   DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++    R R P+ L+L PTRELA QVA+ FE + KN        I  G  + +Q + L+
Sbjct: 68  NMDLAS-RDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ T GR++DH  +G L ++N+  LV+DEAD ML MGFI  ++ + S V    Q 
Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQCQR 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++  + E +L+NP +I+V   + TA T+   F+                 +
Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETE 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +   IIF   K + + +  +L+  G+ V AI+G++ Q  R  I+  F+     ++V
Sbjct: 247 ETDGV---IIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+  + HV N+D+PN  + Y+HRIGRTGRAGR G + +LV  ++++ +  +
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ--HNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           E+     +  +        P  +++  ++  H  AR  + +  K+   D+ K+  +S + 
Sbjct: 364 ERFTGSPMQEV------FMPSAKELAQSRVEHFKARIISAL-DKNKSLDKYKEIITSIRD 416

Query: 419 HIPLKESEKISKL 431
            + L   E ++ L
Sbjct: 417 ELQLDSEELLAGL 429


>gi|145245621|ref|XP_001395078.1| ATP-dependent RNA helicase dhh1 [Aspergillus niger CBS 513.88]
 gi|142981121|sp|A2QY39|DHH1_ASPNC RecName: Full=ATP-dependent RNA helicase dhh1
 gi|134079784|emb|CAK40919.1| unnamed protein product [Aspergillus niger]
          Length = 505

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 187/377 (49%), Gaps = 7/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     + +    LIL PTRELA Q +   +  GK+  + V +  GG        +L 
Sbjct: 107 ERINPKSTKTQA---LILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRLN 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 164 DAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F     R           T+            K+       L 
Sbjct: 224 MLFSATFPLIVKS----FKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q+ R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYKI 399

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +  ++  
Sbjct: 400 EQELGTEIQPIPQNIDK 416


>gi|163940245|ref|YP_001645129.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|163862442|gb|ABY43501.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
          Length = 450

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 149/432 (34%), Positives = 238/432 (55%), Gaps = 16/432 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ +++ P+ I+V +   T +TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMEEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L   L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDDLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EK +   +     +     P ++ +D    N      P P+KS  + +R     S+    
Sbjct: 360 EKTLGAPIQRQIIE----QPMIKNVD---ENGKPVQKPAPKKSGQYRQRDSREGSRSGSK 412

Query: 421 --PLKESEKISK 430
             P  +S   S+
Sbjct: 413 GGPRNDSRNSSR 424


>gi|238794074|ref|ZP_04637691.1| ATP-dependent RNA helicase rhlE [Yersinia intermedia ATCC 29909]
 gi|238726579|gb|EEQ18116.1| ATP-dependent RNA helicase rhlE [Yersinia intermedia ATCC 29909]
          Length = 451

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 164/449 (36%), Positives = 248/449 (55%), Gaps = 8/449 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY+ PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L   +  +   R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    Q  
Sbjct: 61  QLLSLDQQPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I            ++      
Sbjct: 181 RQNLLFSATFSDEIKGLASKLLNNPASVEVARRNTASEQIAQSVHFVDKNRKREL---LS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G I+
Sbjct: 238 QMIGEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE+L+++++  +  D    +P ++   I      R              R +N     
Sbjct: 358 RDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGRGAQRPGMGRGSSAGRPQNGGGAA 417

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFR 446
                + S    + Q D Q   A      
Sbjct: 418 GRGDSRNSR--PRSQADGQRRPAGPSSRG 444


>gi|254482185|ref|ZP_05095426.1| DbpA RNA binding domain family protein [marine gamma
           proteobacterium HTCC2148]
 gi|214037510|gb|EEB78176.1| DbpA RNA binding domain family protein [marine gamma
           proteobacterium HTCC2148]
          Length = 618

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 139/372 (37%), Positives = 208/372 (55%), Gaps = 8/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L LS  +  A+ D GY  P+ IQ  TIP +++  DV G AQTGTGKTA+F LP+L 
Sbjct: 9   SFAELALSEPLQKALADVGYETPSAIQAATIPALIEGRDVLGQAQTGTGKTAAFALPILA 68

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+    +   P+ L+L PTRELA QVA+ F+KY +       + I  G  +  Q ++L+
Sbjct: 69  QLQASSKK---PQVLVLAPTRELAIQVAEAFQKYARYLKDFHVVPIYGGADYRGQLRQLQ 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG L ++ +  LV+DEAD ML MGFI  ++ I    P  RQ 
Sbjct: 126 RGVQVVVGTPGRVMDHMRRGSLDLSALRTLVLDEADEMLRMGFIDDVEWILEQTPDDRQI 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   + ++++  L NP  + +   + T ++I          +          + 
Sbjct: 186 ALFSATMPTAIARIAKQHLNNPVHVAIEVQTMTNKSIRQRVWMMAGVHK---LDALTRIL 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     I+F   +     +   L  +G+S  A++G+I Q+ R   + N K GTI ++V
Sbjct: 243 EVEDFDGVIVFVRTRIATAEIAEKLAARGYSAAALNGDIPQKQREATIDNLKRGTIDILV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P   E Y+HRIGRTGRAGR G A    A  + + + AI
Sbjct: 303 ATDVAARGLDVERISHVINYDIPYDVEAYVHRIGRTGRAGREGDAILFAANRERRLLRAI 362

Query: 361 EKLIEKKVDWLN 372
           EK     ++ + 
Sbjct: 363 EKATGT-IEKME 373


>gi|71282546|ref|YP_268161.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71148286|gb|AAZ28759.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 401

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 154/404 (38%), Positives = 227/404 (56%), Gaps = 11/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A+ D GY KPT IQ K IP+VL   D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLL 60

Query: 61  TILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L           R +  R LIL PTRELA QV  +  +Y K  +++   + GG+  + 
Sbjct: 61  EQLNSQYKETGKKLRAKRIRALILVPTRELAVQVEASISQYAKYLDISSMAMYGGVDAQE 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++L  G D+L+ TPGR+LD  ++  L  + +++LV+DEADRMLDMGFI  I  I   +
Sbjct: 121 QKQRLIWGVDILVATPGRLLDMTHQRVLHFDELDMLVLDEADRMLDMGFIDDINKIIERL 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSATM++E++ +++  +  P  I +    ++   IE   V            
Sbjct: 181 PEHRQNLLFSATMSEEVRGLAKRTIHKPVEISIGADKASKPKIEQWLVTVDKANKSAL-- 238

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
               + +    +  +IF   K     L   LEK+G    +IH    Q  R KIL++FK G
Sbjct: 239 -LSHIITTQNWQQALIFIETKHGAAKLVSQLEKRGIVAESIHSGRAQDIREKILNDFKSG 297

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+ +VA+ +AARGLDI ++  V N+D+P + ++YIHRIGRTGRAG  G+A +LV+K++ 
Sbjct: 298 KIKFLVATAIAARGLDIGELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISLVSKDNF 357

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNP--PLEKIDIAQHNHARKN 396
           + + AIE  +   ++    +   +    PL K++      A K 
Sbjct: 358 RELCAIESRLGHIIERKEFEEFPVKKTVPLSKLNYVTKYAASKK 401


>gi|300779365|ref|ZP_07089223.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
 gi|300504875|gb|EFK36015.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
          Length = 434

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 171/437 (39%), Positives = 250/437 (57%), Gaps = 23/437 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F DL L   +  A+ + GY  PTPIQ ++IP +L   D  G AQTGTGKTA+F +P+L
Sbjct: 1   MNFTDLNLIEPIAKAIQEQGYTTPTPIQERSIPDILDGRDFLGCAQTGTGKTAAFSIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K +   +  + LIL PTRELA Q+ +N   YGK   L   ++ GG+    Q   L+
Sbjct: 61  QNLSKNKIPNKHIKALILTPTRELAIQIEENINAYGKYLPLKQLVIFGGVKQGNQEAALK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+LD   +G + + N+EI V+DEADRMLDMGF+  ++ +  L+P  RQT
Sbjct: 121 KGVDILVATPGRLLDFIAQGIISLKNLEIFVLDEADRMLDMGFVHDVKRVIKLLPQRRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+QK++ + L NP ++EV   SSTA+TI     + Y         L   + 
Sbjct: 181 LFFSATMPGEIQKLANSILNNPVKVEVTPVSSTADTI---KQSVYFVEKDNKLNLLSHIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D   + ++F   K     +   L+K   S  AIHGN  Q +R   L+NFK G  +++V
Sbjct: 238 KNDISDSVLVFARTKHGADKISRKLQKDNISAEAIHGNKSQNARQNALNNFKSGKTRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++  V NF++ + +E Y+HRIGRTGRAG  G + + V   D+ ++   
Sbjct: 298 ATDIAARGIDIDELKFVINFELSDVSETYVHRIGRTGRAGAEGTSISFVDGLDLLNLKNT 357

Query: 361 EKLIEKKV-----------DWLNGDLSSLNPPL----EKIDIAQHNHAR----KNNPIPQ 401
           EKLI KK+           D +     S N P+    EK   + +N++R    +  P P 
Sbjct: 358 EKLIGKKIPVVKDHPFHTDDLVAQKRDSNNKPVPAGGEKPKASNNNNSRSGKNRKKPSPT 417

Query: 402 KSTGFDRRK-KNYSSQK 417
            S GF + K KN++ +K
Sbjct: 418 ASVGFKKPKNKNFTRKK 434


>gi|27366603|ref|NP_762130.1| cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6]
 gi|37676317|ref|NP_936713.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|320158491|ref|YP_004190869.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O]
 gi|27358169|gb|AAO07120.1| Cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6]
 gi|37200858|dbj|BAC96683.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|319933803|gb|ADV88666.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O]
          Length = 641

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 142/378 (37%), Positives = 213/378 (56%), Gaps = 7/378 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+  ++ A+   G+V PTPIQ   IP +LQ  D  G AQTGTGKTA+F LP+L
Sbjct: 6   IQFSDLELNDAILSALDGMGFVSPTPIQAAAIPHLLQGVDALGKAQTGTGKTAAFSLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             L+  + +   P+ ++L PTRELA QVA   +  G+N      L I G      Q + L
Sbjct: 66  NKLDLAQRK---PQAIVLAPTRELAIQVAAEMKNLGQNIRGLKVLEIYGGASIVDQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA V++ TPGR+ D  NR +L +  +   V+DEAD ML+MGF+  +  I    P + Q
Sbjct: 123 KNGAHVIVGTPGRVQDLINRERLDLGEVHTFVLDEADEMLNMGFVDDVTEIMEHAPSSAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   L+ + E FL++P  ++V   + T + +   F         +        
Sbjct: 183 RVLFSATMPPMLKNIVERFLRDPVTVDVAGKNHTVDKVAQQFWVVKGVEKDEAMSRLLET 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D     I+F   +++   L   L  +GF   A+HG+I Q  R + + + K+G I ++
Sbjct: 243 EETD---ASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRQGKAILLVRTNQIRMLRT 359

Query: 360 IEKLIEKKVDWLNGDLSS 377
           IE++ +  ++ +   L  
Sbjct: 360 IERVTKSSMEEIQLPLRD 377


>gi|209809235|ref|YP_002264773.1| cold-shock DEAD box protein A (ATP-independent RNA helicase)
           [Aliivibrio salmonicida LFI1238]
 gi|208010797|emb|CAQ81193.1| cold-shock DEAD box protein A (ATP-independent RNA helicase)
           [Aliivibrio salmonicida LFI1238]
          Length = 641

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 137/372 (36%), Positives = 209/372 (56%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L L   ++ A+ + G+V PTPIQ ++IPL+L   D  G AQTGTGKTA+F LP+L 
Sbjct: 7   EFRQLALEETLLSALDEMGFVAPTPIQAESIPLLLAGRDALGKAQTGTGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            +     +   P+ +I+ PTRELA QVA   +  G+N      L I  G     Q + L 
Sbjct: 67  KI---NLKQHNPQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMRALS 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +++ TPGR+ D  NR +L +  +   ++DEAD ML MGF+  +  I    P T Q 
Sbjct: 124 RGAHIVVGTPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPETAQR 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++ + + +L++P R++V   ++T E +   F         +         
Sbjct: 184 ILFSATMPPMVKTIVDRYLRDPARVDVAGTNNTVEQVTQNFWIVKGVEKDEAMSRLL--- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +   I+F   +++   L   L  +GF   A+HG+I Q  R + + + K G I ++V
Sbjct: 241 ETEEIDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKRGVIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  I
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360

Query: 361 EKLIEKKVDWLN 372
           E++ +  +  + 
Sbjct: 361 ERVTKSSMVEIE 372


>gi|254302223|ref|ZP_04969581.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322415|gb|EDK87665.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 529

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 133/368 (36%), Positives = 209/368 (56%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F +LGLS KV+  +   GY  PTPIQ  TIP +L+   D+ G AQTGTGKTA+F LP++
Sbjct: 9   EFRELGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E     +   + ++L PTRELA QVA+       +  + V  + GG   + Q K ++
Sbjct: 69  ENFEN----LEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR++D   R  L +N+++  ++DEAD ML+MGF+  I+ I +     ++ 
Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM DE+ KV++  ++  + + V +   T +  E      +    +        + 
Sbjct: 185 LFFSATMPDEIMKVAKTHMKEYEVLAVKSRELTTDLTEQ---IYFEVNERDKFEALCRII 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  GIIFC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I ++V
Sbjct: 242 DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T +  ++ + +  I
Sbjct: 302 ATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 361

Query: 361 EKLIEKKV 368
           +K ++K++
Sbjct: 362 QKAVKKEI 369


>gi|269967184|ref|ZP_06181249.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|269828174|gb|EEZ82443.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 522

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 179/467 (38%), Positives = 260/467 (55%), Gaps = 22/467 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ K IP +L+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G   R    R LIL PTRELAAQV +N   Y ++  L  A++ GG+    Q ++L
Sbjct: 61  ERLSNGPRVRANQVRALILTPTRELAAQVQENVFMYSRHLPLNSAVVFGGVKINPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +N+  +  + +E+LV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ +++  + NP  I VN  +STA T+E           KK A +   L
Sbjct: 181 NLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADV---KKKAPMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  ++F   K     L   L +Q     AIHGN  Q +R K L++FK G I+++
Sbjct: 238 IKDGDWKQVLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV   +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFA 357

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKIDIA--------------QHNHARKNNPIPQKS 403
           IE+LI++ +    L G   +   P  K+D                  N A +N P  +K 
Sbjct: 358 IERLIQEVLPRKELEGFAPTNVVPESKLDTRPIKPKKPKKPKKPKAPNAAGENAPATEKK 417

Query: 404 T--GFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
              G ++ K+ ++   +      ++  +   +  +E    +     +
Sbjct: 418 AGNGANKPKRRFNGGNNGNKNSTNQGGAGKPKGNREGQGRANSKPDD 464


>gi|134096391|ref|YP_001101466.1| putative cold-shock DeaD box ATP-dependent RNA helicase (partial
           match) [Herminiimonas arsenicoxydans]
 gi|133740294|emb|CAL63345.1| putative ATP-dependent RNA helicase DeaD-like [Herminiimonas
           arsenicoxydans]
          Length = 826

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 156/455 (34%), Positives = 246/455 (54%), Gaps = 16/455 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL LS  ++  + + GY  P+PIQ  TIPL+L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 9   FSDLNLSEPLLRVLKELGYEAPSPIQAATIPLLLNNSDVLGQAQTGTGKTAAFALPILSR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    +   P+ L+L PTRELA QVA+ F++Y  +      L I  G  + AQ   L R
Sbjct: 69  IDI---KQTTPQALVLAPTRELAIQVAEAFQRYASHIPGFHVLPIYGGQSYGAQLSALRR 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  +G L ++ ++ +V+DEAD ML MGFI  ++ I    P  RQT 
Sbjct: 126 GVHVVVGTPGRVIDHLEKGSLDLSKLKTMVLDEADEMLRMGFIDDVETILQKTPEARQTA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +++++  +L++P+ I V   + TA+ I   +         +        ++
Sbjct: 186 LFSATMPSAIKRIATTYLRDPELITVAAKTGTADNIRQRYWLVSGMQKLEALTRILEAET 245

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   IIF   K     L   L+ +GFS  AI+G+I Q+ R + +   K+G I ++VA
Sbjct: 246 FDGM---IIFARTKLGTEELAGKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDILVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+DVP+  E+Y HRIGRTGRAGR G+A   +A  +   + AIE
Sbjct: 303 TDVAARGLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPRERNLLKAIE 362

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           +   + +  L  DL S+   +  + I++                F    ++Y  + +   
Sbjct: 363 RATRQPIAVL--DLPSVE-VVNDVRISKFKDQIAETIAAGGLEVFHSLIEDYEREHNVPA 419

Query: 422 LKESEKISKLQQD------IQENDADSLGFRGNMP 450
           ++ +  ++K+ +        +   A    +    P
Sbjct: 420 VEIAAALAKMARGDVPLLIDKNKPAPRESWGSEKP 454


>gi|71000753|ref|XP_755058.1| DEAD-box RNA helicase Dhh1/Vad1 [Aspergillus fumigatus Af293]
 gi|74673820|sp|Q4WWD3|DHH1_ASPFU RecName: Full=ATP-dependent RNA helicase dhh1
 gi|66852695|gb|EAL93020.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Aspergillus fumigatus
           Af293]
 gi|159128072|gb|EDP53187.1| ATP dependent RNA helicase (Dhh1), putative [Aspergillus fumigatus
           A1163]
          Length = 507

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 125/417 (29%), Positives = 200/417 (47%), Gaps = 12/417 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     + +    LIL PTRELA Q +   +  GK+  + V +  GG        +L 
Sbjct: 107 ERINPKSTKTQA---LILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRLN 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 164 DAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F     R           T+            K+       L 
Sbjct: 224 MLFSATFPLIVKS----FKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q+ R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKI 399

Query: 361 EKLIEKKVDWLNGDLSSL-----NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           E+ +  ++  +  ++        +P      I+  +  R+       ++  DRR  N
Sbjct: 400 EQELGTEIQPIPQNIDKKLYVYDSPETIPRPISNPSQQRQITNTAANTSTTDRRHHN 456


>gi|270296763|ref|ZP_06202962.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270272750|gb|EFA18613.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 429

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 142/432 (32%), Positives = 235/432 (54%), Gaps = 9/432 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ K+IP++L+  D+  +AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELHLNGNVLEALDAMRFEECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
             L +G         +++ PTRELA Q+    E +     ++   + GG     FE Q +
Sbjct: 61  NKLSEGGHPADAINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++ N L NP  +++       +       A Y  Y  +   + +
Sbjct: 181 RQTIMFSATMPAKIQQLAGNILNNPAEVKLAVSKPAEKI----VQAAYVCYENQKLGIIR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L +++T +  IIF + K  V  +  +L++   +V  +H +++Q  R +++  FK G I 
Sbjct: 237 SLFAEETPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V++++    
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVAITFVSEKEQGSF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IEK +++ +  +         P  K         R  +   +K  G    + N    K
Sbjct: 357 KNIEKFLDRDIYKIPVPEELGEAPEYKPRAFDGGGRRGGHGNGRKPGGNKNGRNNSKGGK 416

Query: 418 --SHIPLKESEK 427
             +  P   SEK
Sbjct: 417 PRAKRPQNGSEK 428


>gi|258566537|ref|XP_002584013.1| hypothetical protein UREG_06980 [Uncinocarpus reesii 1704]
 gi|237907714|gb|EEP82115.1| hypothetical protein UREG_06980 [Uncinocarpus reesii 1704]
          Length = 512

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 131/447 (29%), Positives = 210/447 (46%), Gaps = 10/447 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 51  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 110

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                   ++   + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 111 ERT---NPKISKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLN 167

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 168 DTVHIIVGTPGRILDLASKGVADLSECATFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 227

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F     R           T+            ++       L 
Sbjct: 228 MLFSATFPMIVKS----FKDKHMRNPYEINLMDELTLRGITQYYAFVEERQKVHCLNTLF 283

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q++R ++  +F+ G  + +V
Sbjct: 284 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMFQQNRNRVFHDFRNGVCRNLV 343

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 344 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLIGWEDRYNLYKI 403

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+ +  ++  +     S++  L   D  +       N    ++T   ++  N  SQ    
Sbjct: 404 EQELGTEIQPIP---PSIDKKLYVYDTPETIPRPIANAPSGRNTLSTQQATNSESQHRRQ 460

Query: 421 PLKESEKISKLQQDIQENDADSLGFRG 447
               S    +     Q++     G RG
Sbjct: 461 GHPGSGHGQQAANRGQQSRGSYRGGRG 487


>gi|225174307|ref|ZP_03728306.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
 gi|225170092|gb|EEG78887.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
          Length = 424

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 152/430 (35%), Positives = 231/430 (53%), Gaps = 27/430 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA LG+  ++   + + G   PTP+Q + IP +L   D+   AQTGTGKT +F+LP+L 
Sbjct: 4   DFASLGIRGELHKTLAELGISVPTPVQTQAIPALLSGKDIVAQAQTGTGKTLAFLLPILE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LI+ PTRELA Q+     K           + GG   E Q KKL+ 
Sbjct: 64  KVKV---DKPFIQALIITPTRELALQITAELNKLASTVGANSLAVYGGQDVERQIKKLKG 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH  RG +  + +++LV+DEAD+ML MGF+P +  I       RQT+
Sbjct: 121 AIHIVVGTPGRILDHMRRGTISFSGVQMLVLDEADQMLHMGFLPEVDQIIGQTSPKRQTM 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++ +++ +++ P  I++ +   T + I        +   +        L  
Sbjct: 181 LFSATMPGSIRNLAKRYMKTPVDIKIESKKVTLDEISQ---LVVSTTDRAKQDTLFKLID 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q      +IFC  K+    L  +L + G+S   +HG++ Q  R +++  F++  IQL+VA
Sbjct: 238 QYRPFLALIFCRTKRRAAKLNQALLEHGYSADELHGDLSQAKREQVMKRFRQAHIQLLVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HVFN+D+P   E+YIHRIGRTGRAG  G A TLVA +D   + AIE
Sbjct: 298 TDVAARGLDVEGITHVFNYDIPQDLESYIHRIGRTGRAGEKGLALTLVAPKDSPMLQAIE 357

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ-KSHI 420
           K +   +D LN               A  N  ++    P++       KK+ SSQ + H 
Sbjct: 358 KGLGYSIDNLN---------------APKNSEKQRRIQPERQD-----KKSVSSQNRQHQ 397

Query: 421 PLKESEKISK 430
           P K S++  K
Sbjct: 398 PSKFSKRTGK 407


>gi|225022855|ref|ZP_03712047.1| hypothetical protein CORMATOL_02901 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944379|gb|EEG25588.1| hypothetical protein CORMATOL_02901 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 715

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 139/373 (37%), Positives = 222/373 (59%), Gaps = 8/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL   VV AV + G+  P+PIQ +TIP++L  HDV G+AQTGTGKTA+F LP+L+
Sbjct: 80  SFDTLGLPKPVVKAVENVGFETPSPIQAQTIPVLLDGHDVLGLAQTGTGKTAAFALPILS 139

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL--LIGGIPFEAQNKKL 119
           +++     +R P+ LIL PTRELA QVAD+F+ +  + +  +++  + GG  +  Q   L
Sbjct: 140 LIDA---EIRHPQALILAPTRELALQVADSFQVFVDHLDGDISVLPIYGGQAYGIQLSGL 196

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR++DH  +G L ++ +  LV+DEAD ML+MGF   ++ I +  P  +Q
Sbjct: 197 RRGAQIVVGTPGRVIDHLEKGSLDISELRFLVLDEADEMLNMGFQEDVERILADTPEEKQ 256

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   ++++S+ ++ +P  I+V + + T   I   F+       +        +
Sbjct: 257 VALFSATMPSGIRRLSKQYMNDPHEIQVKSETRTNTNITQRFLNVAH---RNKLDALTRI 313

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  I+F   K     L   L  +GF+  AI+G+I Q+ R + +   K+G + ++
Sbjct: 314 LEVTEFEAMIMFVRTKFETEELAEKLRARGFNAAAINGDIAQQQRERTVEQLKDGRLDIL 373

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 374 VATDVAARGLDVERISHVLNYDIPSDTESYVHRIGRTGRAGRSGEAILFVTPRERRFLRN 433

Query: 360 IEKLIEKKVDWLN 372
           IE+     +  + 
Sbjct: 434 IERATNAPLQEME 446


>gi|228985558|ref|ZP_04145712.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774135|gb|EEM22547.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 454

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 143/409 (34%), Positives = 230/409 (56%), Gaps = 14/409 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ + IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPECSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLTTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T  TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           EK +   +     +     P ++++D    N        P+KS  + +R
Sbjct: 360 EKTLGAPIQREIIE----QPKIKRVD---KNGKPVPRLAPKKSGEYRQR 401


>gi|156043018|ref|XP_001588066.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|154695693|gb|EDN95431.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 535

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 116/425 (27%), Positives = 198/425 (46%), Gaps = 17/425 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +   ++  + ++G+ KP+PIQ + IP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFEDFSIKRDLLMGIFESGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPAL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +    ++V+    LIL PTRELA Q +   +  G++  + V +  GG        +L 
Sbjct: 107 ERINPKSSKVQ---CLILVPTRELALQTSQVCKTLGQHLGVNVMVTTGGTTLRDDIMRLA 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +    ++   + ++DEAD++L   F   I+ +    P  RQ 
Sbjct: 164 EPVHIIVGTPGRILDLAGKNVADLSECNMFIMDEADKLLSPEFTIVIEQLLQFHPKDRQI 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F                 T+            K+       L 
Sbjct: 224 MLFSATFPMTVKD----FSDKNMADPYEINLMDELTLRGITQFYAFVEEKEKVHCLNTLF 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMIQANRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L++ ED  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLISWEDRFNLYNI 399

Query: 361 EKLIEKKVDWLNGDL----------SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           E+ +  ++  +   +           ++  P+          + ++   P + +G  R  
Sbjct: 400 EQELGTEIAPIPAIIPRNLYVYETPENIPRPVSNFQTNTRQPSGRDQQQPTQHSGNQRSS 459

Query: 411 KNYSS 415
             +++
Sbjct: 460 GQFNN 464


>gi|195379282|ref|XP_002048409.1| GJ13954 [Drosophila virilis]
 gi|194155567|gb|EDW70751.1| GJ13954 [Drosophila virilis]
          Length = 605

 Score =  168 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 118/476 (24%), Positives = 215/476 (45%), Gaps = 21/476 (4%)

Query: 2   DFADL-----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFV 56
            F +L      L P++   +L  G+ +PTPIQ++ +P++L    +   A TG+GKT +F+
Sbjct: 121 SFDELSTPHFKLLPRLQENLLSYGFAQPTPIQMQALPVLLNNRALMACAPTGSGKTLAFL 180

Query: 57  LPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFE 113
            P++  L     +    R L+L PTRELA Q+     +  +   L    +          
Sbjct: 181 TPIINGLRS--HKTTGLRALVLAPTRELAQQIYRECAELTRGTGLRTHFISKVSEARQQH 238

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN---- 169
             + K +    +      R L       L    IE  V+DEADR+++ G   + +     
Sbjct: 239 GPDCKQKYDILISTPNRVRFLLQQQPPLLDFKGIEWFVLDEADRLMEEGQNNFKEQLDEI 298

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
             +     ++   FSAT T  + K +   L+N  R+ +   +S  +T++   +   ++  
Sbjct: 299 YAACTHPQKRVAFFSATYTVPVAKWALRHLKNLVRVTIGVQNSATDTVQQELLFVGSESG 358

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K  A+ +  +  Q      ++F   K     L   L   G +V  IH    Q  R   + 
Sbjct: 359 KLLAVRE--MVRQGLQPPVLVFVQSKDRAKQLFEELLYDGINVDVIHAERTQHQRDNCVR 416

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+EG I +++ ++L  RG+D   V  V N+D P    +YIHRIGRTGRAGR G+A T  
Sbjct: 417 AFREGHIWVLICTELMGRGIDFKGVNLVINYDFPPSTISYIHRIGRTGRAGRPGRAITFF 476

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            ++D  ++ +I ++I+       G++      ++K+  ++    R   P+ ++      R
Sbjct: 477 TQDDTANLRSIAQIIKNS----GGEVPEYMLQMKKVRKSE-AKMRAKKPLEREDISTKIR 531

Query: 410 KKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDKL 465
            +   + K+ + L++ EK  K+ +  +    ++L   G+  A    K   K+ D++
Sbjct: 532 PEPRPTPKNFVKLQKIEKTEKVLKQQKHKKHNNLAKNGDSNALRKTKKLAKIKDQI 587


>gi|323496504|ref|ZP_08101562.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           sinaloensis DSM 21326]
 gi|323318781|gb|EGA71734.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           sinaloensis DSM 21326]
          Length = 444

 Score =  168 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 130/421 (30%), Positives = 200/421 (47%), Gaps = 9/421 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + K T IQ K IP+ +   D+   ++TG+GKT +FVLP+L
Sbjct: 1   MHFKDLGLDNRLLKNLKHLDFKKATEIQQKAIPVAIAGKDLLASSKTGSGKTLAFVLPIL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +    + PR +IL PTRELA QV           +    L++GG  F  Q K L
Sbjct: 61  HKSLKSKAFSAKDPRAVILAPTRELAKQVYGELRTMLAGLSYDATLIVGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +    ++ TPGR+ DH     L +  +E LV+DEADRMLD+GF P ++ I +     R+
Sbjct: 121 RKYPKFIVATPGRLADHLEHRSLFLEGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +     F        +    S  E  +         +      + + +
Sbjct: 181 QTLMFSATLDHAEVNDIAFEMLNAPKRIAVGVSNEEHKDITQKFYLCDHLDHKEAILERV 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   K  IIF   + +   L   L ++     A+ GN++Q  R  I+S F+    +++
Sbjct: 241 IEEANYKQLIIFTATRADTDRLTEKLNEKKLKAIALSGNLNQTQRNTIMSQFERAVFKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDI +V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D      
Sbjct: 301 VTTDVASRGLDIANVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKR 360

Query: 360 IEKLIEK-----KVDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKSTGFDRRKKNY 413
           +E  +++     +++ L G    L P   K D      A  K  P   K       K++ 
Sbjct: 361 VEAYLQQDLSFSELEGLKGKFKGLKP--RKPDFRNKGKATNKKGPAQAKKATKKPIKRDK 418

Query: 414 S 414
           S
Sbjct: 419 S 419


>gi|301159830|emb|CBW19349.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|323131640|gb|ADX19070.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
          Length = 629

 Score =  168 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRVLR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|296135178|ref|YP_003642420.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
 gi|295795300|gb|ADG30090.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
          Length = 488

 Score =  168 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 161/409 (39%), Positives = 229/409 (55%), Gaps = 9/409 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L  +++ AV D GY K TPIQ K IPL+L   D+ G AQTGTGKTA+F LP+L  
Sbjct: 17  FSDLALDARILRAVSDMGYEKLTPIQAKAIPLLLDGRDIMGAAQTGTGKTAAFSLPILQQ 76

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L    +    P        +L PTRELA QV  N + Y K+  L  A + GG+    Q  
Sbjct: 77  LLPLASTSVSPARHPVRALMLAPTRELADQVYTNLKAYAKHTPLRCACVFGGMDMAPQKA 136

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G D+L+ TPGR+LDH     + +  ++ +V+DEADRMLD+GF+P +Q I   +P  
Sbjct: 137 ELRTGVDLLVATPGRLLDHLEAKTVNLGQVQFVVLDEADRMLDIGFLPDLQRILGFLPKQ 196

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R TLLFSAT + E++++++++LQNP  +EV  P++TA  +E           +   +   
Sbjct: 197 RTTLLFSATFSTEIKRLAQSYLQNPLLVEVARPNATATNVEQRVYQVEEDDKRATLVQLL 256

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                + +   I+F N +     L   LE+ G    A+HG+  Q  R+  L  FK G IQ
Sbjct: 257 ---RDNPLPQVIVFVNSRLGAGRLTRLLERDGIKAAAMHGDKSQAERLTTLEAFKRGEIQ 313

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V N+DVP  AE+Y+HRIGRTGRAG  G A TL    D + +
Sbjct: 314 ALVATDVAARGLDIAELPGVVNYDVPFSAEDYVHRIGRTGRAGASGLAITLATARDARSL 373

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKID-IAQHNHARKNNPIPQKSTG 405
             IEKLI+++ +     L     P    D   +H  AR    +P  +  
Sbjct: 374 ADIEKLIKRQFEKQTVSLERAPRPRRDADETREHRIARAPRALPSDTGA 422


>gi|268592819|ref|ZP_06127040.1| ATP-dependent RNA helicase DeaD [Providencia rettgeri DSM 1131]
 gi|291311604|gb|EFE52057.1| ATP-dependent RNA helicase DeaD [Providencia rettgeri DSM 1131]
          Length = 643

 Score =  168 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 138/393 (35%), Positives = 231/393 (58%), Gaps = 7/393 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+LGLS  ++ A+ D GY KP+PIQ + IPL++  +DV G+AQTG+GKTA+F LP+L
Sbjct: 7   ISFAELGLSASILTALNDLGYEKPSPIQQQCIPLLMDGNDVLGMAQTGSGKTAAFSLPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++     ++ P+ L+L PTRELA QVA+    + K+ N    + +  G  ++ Q + L
Sbjct: 67  HNIDP---DLKAPQILVLAPTRELAVQVAEAMSDFSKHMNRVNVVALYGGQRYDVQLRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  +++ TPGR+LDH  RG L ++ ++ LV+DEAD ML MGFI  ++NI S +P   Q
Sbjct: 124 RQGPQIVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F+++PK I +    +T   I   +   Y     +        
Sbjct: 184 TALFSATMPEPIRRITRRFMKDPKEIRIQASITTRPDIAQSYWTVYGMRKNEA---LVRF 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + ++
Sbjct: 241 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 301 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           +E+ ++  +  +    + L     +   A+   
Sbjct: 361 VERTMKLTIPEVELPDADLLSQRRQAKFAEKIQ 393


>gi|238798926|ref|ZP_04642391.1| ATP-dependent RNA helicase rhlE [Yersinia mollaretii ATCC 43969]
 gi|238717236|gb|EEQ09087.1| ATP-dependent RNA helicase rhlE [Yersinia mollaretii ATCC 43969]
          Length = 451

 Score =  168 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 163/449 (36%), Positives = 249/449 (55%), Gaps = 8/449 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY+ PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L + +  +   R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    Q  
Sbjct: 61  QLLNQNQEPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I            ++      
Sbjct: 181 RQNLLFSATFSDEIKGLASKLLHNPVSVEVARRNTASEQITQSVHFVDKNRKREL---LS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G I+
Sbjct: 238 QMIGEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE+L+++++  +  +    +P ++   I      R              R +N     
Sbjct: 358 RDIERLLKREIPRIALEGYEPDPSIKADPIQNGRQGRGAQRPGMGRGSSAGRPQNGGGAA 417

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFR 446
                + S    + Q D Q   A      
Sbjct: 418 GRGDSRNSR--PRSQADGQRRPAGPSSRG 444


>gi|296329829|ref|ZP_06872313.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305676555|ref|YP_003868227.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296152868|gb|EFG93733.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305414799|gb|ADM39918.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 479

 Score =  168 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 142/424 (33%), Positives = 230/424 (54%), Gaps = 20/424 (4%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M  F +  +S  ++ A+   GY +PT +Q   IP  L+R D+   +QTG+GKTASF +P+
Sbjct: 1   MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +    +   P+ LIL PTRELA QV ++    G+   +    + G   F+ Q  +L
Sbjct: 61  CELADWDENK---PQALILTPTRELAVQVKEDITNIGRFKRIKATSVFGKSSFDKQKAEL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++ + +++ TPGR+LDH  +G L ++ +  LVIDEAD ML+MGFI  ++ I   +P  R 
Sbjct: 118 KQKSHMVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERT 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT+ ++++K+S  ++QNP+ IE+     T + IEH   A      +    L + +
Sbjct: 178 TMLFSATLPEDIEKLSRQYMQNPQHIEIKAAGLTTKNIEH---AVIQVREENKFSLLKDV 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +   + IIFC  K++V  L   L+  G+    IHG + Q  R  +++ FK G  + +
Sbjct: 235 LMTENPDSSIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI ++  V N+D+P   E+Y+HR GRTGRAG  GKA + V   + + +  
Sbjct: 295 VATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLAD 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+ I  ++  +                +Q   ARK      K       KK+ S + + 
Sbjct: 355 IEEYIGFEIQKIEAP-------------SQEEVARKKPEFLAKMNDRPESKKDKSEELNK 401

Query: 420 IPLK 423
             +K
Sbjct: 402 DIMK 405


>gi|294339231|emb|CAZ87585.1| RNA helicase [Thiomonas sp. 3As]
          Length = 488

 Score =  168 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 161/409 (39%), Positives = 229/409 (55%), Gaps = 9/409 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L  +++ AV D GY K TPIQ K IPL+L   D+ G AQTGTGKTA+F LP+L  
Sbjct: 17  FSDLALDARILRAVSDMGYEKLTPIQAKAIPLLLDGRDIMGAAQTGTGKTAAFSLPILQQ 76

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L    +    P        +L PTRELA QV  N + Y K+  L  A + GG+    Q  
Sbjct: 77  LLPLASTSVSPARHPVRALMLAPTRELADQVYTNLKAYAKHTPLRCACVFGGMDMAPQKA 136

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G D+L+ TPGR+LDH     + +  ++ +V+DEADRMLD+GF+P +Q I   +P  
Sbjct: 137 ELRTGVDLLVATPGRLLDHLEAKTVNLGQVQFVVLDEADRMLDIGFLPDLQRILGFLPKQ 196

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R TLLFSAT + E++++++++LQNP  +EV  P++TA  +E           +   +   
Sbjct: 197 RTTLLFSATFSTEIKRLAQSYLQNPLLVEVARPNATATNVEQRVYQVEEDDKRATLVQLL 256

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                + +   I+F N +     L   LE+ G    A+HG+  Q  R+  L  FK G IQ
Sbjct: 257 ---RDNPLPQVIVFVNSRLGAGRLTRLLERDGIKAAAMHGDKSQAERLTTLEAFKRGEIQ 313

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGLDI ++  V N+DVP  AE+Y+HRIGRTGRAG  G A TL    D + +
Sbjct: 314 ALVATDVAARGLDIAELPGVVNYDVPFSAEDYVHRIGRTGRAGASGLAITLATARDARSL 373

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKID-IAQHNHARKNNPIPQKSTG 405
             IEKLI+++ +     L     P    D   +H  AR    +P  +  
Sbjct: 374 ADIEKLIKRQFEKQTVSLERAPRPRRDADETREHRIARAPRALPSDTGA 422


>gi|166711384|ref|ZP_02242591.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 634

 Score =  168 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 142/371 (38%), Positives = 222/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV + GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 11  FADLGLSGAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
            +  + +   P+ L+L PTRELA QVA+ F+KY +       L +  G P+  Q   L+R
Sbjct: 71  ADLNQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P  + +   ++T+ +I   +      +          ++ 
Sbjct: 188 LFSATMPPAIRRIAQTYLKDPVEVTIAAKTTTSASIRQRYWWVNGLHKLDALTRILEVEP 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   IIF   K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++VA
Sbjct: 248 FDGM---IIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A   V   +   + +IE
Sbjct: 305 TDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTPREKGMLRSIE 364

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 365 RATRQPIEEMQ 375


>gi|134297916|ref|YP_001111412.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134050616|gb|ABO48587.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 460

 Score =  168 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 152/461 (32%), Positives = 233/461 (50%), Gaps = 22/461 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LG+  ++   +   G  +PTPIQ +TIP++L   DV   AQTGTGKT +FVLP+L 
Sbjct: 3   DFLQLGIRRELNELLRVYGITEPTPIQKQTIPILLSGKDVIAQAQTGTGKTLAFVLPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +    + LIL PTRELA Q+    +K     +  V  + GG   E QNK+L+ 
Sbjct: 63  KIDA---KKSYIQALILTPTRELALQITTEVKKLASKMDANVLAVYGGQDVERQNKRLQG 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH  RG + +  + +LV+DEAD+ML MGF+  ++ I       RQT+
Sbjct: 120 NTHIVIATPGRLLDHLGRGTIRLTGVSMLVLDEADQMLHMGFLNEVEKIIHQTSAKRQTM 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++ +S  +++ P  I V     T E              +      + L  
Sbjct: 180 LFSATMPAEIRALSVKYMRKPMDIHVRGTGITLEKT---KQIAVETTDRTKQETLRKLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +     GIIFC  K+    L   L   G++   +HG++ Q  R +++  F+E  +Q++VA
Sbjct: 237 EYQPYLGIIFCRTKRRASALNEMLLAHGYNSDELHGDLSQAKREQVMKRFREAKLQILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T V+  D   +  IE
Sbjct: 297 TDVAARGLDVEGVTHVFNYDIPQDVESYIHRIGRTGRAGDTGLAVTFVSPRDRTDLQMIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY-------- 413
           K I  K++  +    ++          + +   K  P   +    +++  N         
Sbjct: 357 KGIGMKLEKRSAHRQTIQEVPGDKTFVKKSTKEKAGPYSTEKAMKNKKPLNGKLGFKKGK 416

Query: 414 ------SSQKSHIPLKESEKISKL--QQDIQENDADSLGFR 446
                  S K   PLK+  +      ++     + +S G +
Sbjct: 417 KNSTEAKSIKEVAPLKQKRRKESPLSKKRTSNKNGNSRGKK 457


>gi|332305447|ref|YP_004433298.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172776|gb|AEE22030.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 412

 Score =  168 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 130/404 (32%), Positives = 207/404 (51%), Gaps = 11/404 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L  ++  AV D GY +PT IQ   IP  ++  D+   A TGTGKTA+F+LP+   
Sbjct: 2   FEQLELDDELCRAVADLGYSEPTSIQQLVIPAAMEGKDILASAPTGTGKTAAFLLPVCQF 61

Query: 63  LEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L     R     R LIL PTRELA QV +   +  +  ++   ++ GGI +    + LE+
Sbjct: 62  LLDYPRRHPGSTRILILTPTRELAQQVYNQALELSRYTDIVCGVITGGINYGTDKETLEK 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+L+ TPGR+ +H  +      +IE L++DEADRMLDMGF   +  I++   + +Q++
Sbjct: 122 NLDILVATPGRLFEHIEQESFDCRDIECLILDEADRMLDMGFSSIVNQISAEARWRKQSM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+      +S               +S+ +         +     K          
Sbjct: 182 LFSATLEGA--GISRFAKDILNDPVELEAASSRKEQGKIHQWLHLADDAKHKYALLKHIL 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +++ ++F   +  +  L   LE+ GF+VC + G + Q  R   ++ F+ G +++++A
Sbjct: 240 THQVESAVVFVKTRDRLNELKQILERDGFTVCWLQGEMPQDKRNLSMAKFRSGEVKILIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ ++ HV N+D+P  A+ Y+HRIGRTGRAG  G A +LV   DI  +  IE
Sbjct: 300 TDVAARGIDVENISHVINYDMPRTADVYVHRIGRTGRAGNKGTAISLVEAHDIAIVPKIE 359

Query: 362 KLIEKK-----VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           +  E+      +D L        PP ++        A+K   IP
Sbjct: 360 RYTEQPLKRRVIDELRPKNKEAKPPAKR---KISKRAKKAAGIP 400


>gi|305682037|ref|ZP_07404841.1| ATP-dependent RNA helicase DeaD [Corynebacterium matruchotii ATCC
           14266]
 gi|305658510|gb|EFM48013.1| ATP-dependent RNA helicase DeaD [Corynebacterium matruchotii ATCC
           14266]
          Length = 721

 Score =  168 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 139/373 (37%), Positives = 222/373 (59%), Gaps = 8/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL   VV AV + G+  P+PIQ +TIP++L  HDV G+AQTGTGKTA+F LP+L+
Sbjct: 73  SFDTLGLPKPVVKAVENVGFETPSPIQAQTIPVLLDGHDVLGLAQTGTGKTAAFALPILS 132

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL--LIGGIPFEAQNKKL 119
           +++     +R P+ LIL PTRELA QVAD+F+ +  + +  +++  + GG  +  Q   L
Sbjct: 133 LIDA---DIRHPQALILAPTRELALQVADSFQVFVDHLDGDISVLPIYGGQAYGIQLSGL 189

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR++DH  +G L ++ +  LV+DEAD ML+MGF   ++ I +  P  +Q
Sbjct: 190 RRGAQIVVGTPGRVIDHLEKGSLDISELRFLVLDEADEMLNMGFQEDVERILADTPEDKQ 249

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   ++++S+ ++ +P  I+V + + T   I   F+       +        +
Sbjct: 250 VALFSATMPSGIRRLSKQYMNDPHEIQVKSETRTNTNITQRFLNVAH---RNKLDALTRI 306

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  I+F   K     L   L  +GF+  AI+G+I Q+ R + +   K+G + ++
Sbjct: 307 LEVTEFEAMIMFVRTKFETEELAEKLRARGFNAAAINGDIAQQQRERTVEQLKDGRLDIL 366

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 367 VATDVAARGLDVERISHVLNYDIPSDTESYVHRIGRTGRAGRSGEAILFVTPRERRFLRN 426

Query: 360 IEKLIEKKVDWLN 372
           IE+     +  + 
Sbjct: 427 IERATNAPLQEME 439


>gi|50119665|ref|YP_048832.1| ATP-dependent RNA helicase DeaD [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610191|emb|CAG73633.1| ATP-independent RNA helicase [Pectobacterium atrosepticum SCRI1043]
          Length = 637

 Score =  168 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 135/378 (35%), Positives = 226/378 (59%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   SFSDLGLSAPIINALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFALPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+ +    + +  G  ++ Q + L 
Sbjct: 67  NLKP---ELKAPQMLVLAPTRELAVQVAEACSDFAKHMHGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + +P T QT
Sbjct: 124 GGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPATHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F+++P+ + + +  +T   I   +         +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVQGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  +
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLAIPEVELPNAEL 378


>gi|90425187|ref|YP_533557.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
 gi|90107201|gb|ABD89238.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
          Length = 481

 Score =  168 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 159/402 (39%), Positives = 229/402 (56%), Gaps = 10/402 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL+  +  A+ +  Y+ PTPIQ +TIPL +   DV GIAQTGTGKTASF LP++ 
Sbjct: 9   SFQDFGLAEAITRALKEENYLTPTPIQAQTIPLAMAGRDVVGIAQTGTGKTASFALPIIH 68

Query: 62  ILEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L + R + +     +L   PTREL+ Q+ ++F  YG++  LT AL IGG+P   Q + +
Sbjct: 69  RLLENRIKPQPKTCRVLVLSPTRELSGQILESFNAYGRHVRLTSALAIGGVPMGRQVRSI 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR+LD      L +N +E LV+DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 129 MPGLDVLVATPGRLLDLVQTNALKLNQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM  ++  +++  L++P R+ V   +ST E I    +            L   +
Sbjct: 189 TLFFSATMPKDIADLADQMLRDPARVAVTPVASTVERITQRIIQVDHSAK---PTLLAQI 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+ +   +IF   K     +   L + G +  AIHGN  Q  R ++L+ F+ G I+ +
Sbjct: 246 LKQENVNRALIFTRTKHGADKVVKGLARAGITADAIHGNKSQNHRERVLAAFRAGEIRTL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HV NFD+PN  E Y+HRIGRT RAG  G A +LVA E++  +  
Sbjct: 306 VATDIAARGIDVDGITHVVNFDLPNIPETYVHRIGRTARAGAEGIAISLVAGEEMAFLRD 365

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           IEKLI   +            P  +  +A+ +  R  +  P 
Sbjct: 366 IEKLIRITLPR-----EDRRTPGHRDTVAKVSQHRGAHAAPH 402


>gi|323304679|gb|EGA58441.1| Rrp3p [Saccharomyces cerevisiae FostersB]
          Length = 543

 Score =  168 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 145/426 (34%), Positives = 227/426 (53%), Gaps = 8/426 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L P+++ A  +  Y KPTPIQ K IP  L+ HD+ G+AQTG+GKTA+F +P+L 
Sbjct: 124 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 183

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   +         IL PTRELA Q+ + F+  G    +    ++GG+    Q + L R
Sbjct: 184 RLWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR 240

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH  N     +  ++ LV+DEADR+LDM F P +  I  ++P   +T
Sbjct: 241 KPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT 300

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSATMT ++ K+    L NP +  V+    T +T+    +           +     
Sbjct: 301 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNE 360

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               TM   IIF   K N   L        FS  A+HG+++Q  RM  L  FK G   ++
Sbjct: 361 FIGKTM---IIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSIL 417

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV++ D++ I  
Sbjct: 418 VATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 477

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+++ KK+   + D + +      +D A      + N   ++     + ++     + +
Sbjct: 478 IEEVLGKKLPKESVDKNIILTLRGSVDKANGEVVMEMNRRNKEKIARGKGRRGRMMTREN 537

Query: 420 IPLKES 425
           + + E 
Sbjct: 538 MDMGER 543


>gi|317051368|ref|YP_004112484.1| DEAD/DEAH box helicase domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316946452|gb|ADU65928.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum
           S5]
          Length = 488

 Score =  168 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 141/393 (35%), Positives = 214/393 (54%), Gaps = 9/393 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F  LGLS + + A+ + G+ KPT IQ   IPLVL +H DV G AQTGTGKTA+F LP++
Sbjct: 9   SFESLGLSAQTLQALREKGFEKPTSIQKACIPLVLHQHVDVVGQAQTGTGKTAAFGLPII 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R +++    LIL PTRELA QVAD       +  L +A L GG     Q +KL 
Sbjct: 69  ETVKPERRQIQA---LILTPTRELALQVADEITSLCGSMKLDIATLYGGQSIGLQIQKLR 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  + + TPGRI D  +RG L ++++E +V+DEAD ML+MGFI  I+NI    P  ++ 
Sbjct: 126 RGVHIAVGTPGRIQDLIDRGNLDLSHLEYVVLDEADEMLNMGFIEDIENILQHTPAEKRM 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +  +++ +       E      T +T        Y             + 
Sbjct: 186 LLFSATMPRPILNLAKRY---MSTYEHVVAEQTQKTTSLTDQIYYEVREADKFEALCRVI 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  G++FC  K +   +   L+ + +   A+HG++ Q  R KIL  F+   + ++V
Sbjct: 243 DITPDFYGVVFCRTKVDADEITRRLQHRKYVTEALHGDVSQNQREKILDAFRRKRLNILV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HV NF +P   E+Y+HR+GRTGRAG+ G A T ++  + + +  I
Sbjct: 303 ATDVAARGIDVQNLTHVINFSLPQSPESYVHRVGRTGRAGKEGTAITFISPAEFRKLAFI 362

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHN 391
           +K+ +  +    L    + +    E I  A  N
Sbjct: 363 QKITQTTIRRQELPDVNTVIKLKKESIAGALEN 395


>gi|303238786|ref|ZP_07325318.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302593665|gb|EFL63381.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 381

 Score =  168 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 150/375 (40%), Positives = 228/375 (60%), Gaps = 6/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  L +   ++ A+ + GY  PT IQ + IP++L+  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MDFEKLNIITPILKAICEEGYTTPTLIQQQAIPVILEGRDLLGCAQTGTGKTAAFAIPLL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L K R  ++  R +   IL PTRELA Q+ ++ E YG+   +  A++ GG+    Q  
Sbjct: 61  QTLYKERTNLKGQRIVKGLILTPTRELAIQIGESLEAYGRYTGIKHAVIFGGVSQVPQVN 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+++ TPGR+LD  N+  + ++ +++L++DEADRMLDMGF   ++ I S +  T
Sbjct: 121 KLRSGVDIIVATPGRLLDLMNQKYINVSCLKMLILDEADRMLDMGFSFDVKKIISRLTDT 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM  E+ K+ +  L+NP ++EV   SST +TIE        +       L  
Sbjct: 181 RQTLLFSATMPKEITKMVDAILKNPVKVEVTPVSSTVDTIEQNVYFVEQK---DKKSLLI 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L     +++ ++F   K     +   L K   +  AIHG+  Q +R   L+NFK    +
Sbjct: 238 KLLKNRAIESVLVFTRTKHGADKIAKDLAKLSITAQAIHGDKSQVARQIALNNFKLKRTR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++ H+ NFD+PN  E Y+HRIGRTGRAG  G A +   +E++ ++
Sbjct: 298 VLVATDIAARGIDIQELSHIINFDLPNVPETYVHRIGRTGRAGMVGTALSFCDREEMGYL 357

Query: 358 DAIEKLIEKKVDWLN 372
            AI+KLI KK+  + 
Sbjct: 358 RAIQKLISKKIPVVE 372


>gi|291562141|emb|CBL40957.1| Superfamily II DNA and RNA helicases [butyrate-producing bacterium
           SS3/4]
          Length = 560

 Score =  168 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 136/395 (34%), Positives = 227/395 (57%), Gaps = 15/395 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L P+++ AV D G+   +PIQ + IP+ ++ HD+ G AQTGTGKTA+F +P+L  
Sbjct: 6   FDELNLDPRILRAVTDMGFEAASPIQAQAIPVEMEGHDMIGQAQTGTGKTAAFGIPLLMK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    + +    +IL PTRELA QVA+   +  K  +    L +  G     Q + L+ 
Sbjct: 66  MDPENRKTQ---AMILCPTRELAIQVAEELRRLAKYMSGIKILPVYGGQEIVKQIRSLKG 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH  R  +  + I  +V+DEAD ML+MGF+  ++ I   +P  RQT+
Sbjct: 123 GVQIIVGTPGRVMDHMRRKTIRTDAIHTVVLDEADEMLNMGFLEDMETILGELPEERQTV 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM   + ++++ F ++PK ++V     T   +   +     +   +          
Sbjct: 183 MFSATMPHAIAQIAQKFQKDPKMVQVVKKELTVPKVTQYYYEVKPRNKVEVMCRLL---D 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + K  + FCN KK V  L  +L+ +G+    +HG++ Q  R +++ +F+ G  +++VA
Sbjct: 240 LYSPKLSVAFCNTKKQVDELVQALQGRGYFAEGLHGDLKQEQRDRVMGSFRNGATEILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G+AF+L    ++  +  I+
Sbjct: 300 TDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGRAFSLAVGSEVYKLRDIQ 359

Query: 362 KLIEKKVDWLNGDLSSLN----PPLEKI--DIAQH 390
           +  + K+  +   + SL+       EKI  D+ QH
Sbjct: 360 RFCKTKI--VPQPIPSLDDVTAIKAEKILDDVQQH 392


>gi|200386509|ref|ZP_03213121.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199603607|gb|EDZ02152.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 629

 Score =  168 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 222/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+ +    + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMSGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|124265824|ref|YP_001019828.1| putative ATP-dependent RNA helicase 2 [Methylibium petroleiphilum
           PM1]
 gi|124258599|gb|ABM93593.1| putative ATP-dependent RNA helicase 2 [Methylibium petroleiphilum
           PM1]
          Length = 494

 Score =  168 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 169/372 (45%), Positives = 234/372 (62%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L PK++ AV ++GY+  TPIQ K IPLVL   DV G AQTGTGKTA+F LP+L  
Sbjct: 21  FDTLALDPKLLRAVAESGYLLMTPIQAKAIPLVLAGRDVMGAAQTGTGKTAAFSLPLLQK 80

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + K  +    P        +L PTRELA QVA+N + Y K+  L   ++ GGI  + Q  
Sbjct: 81  MLKHESSSTSPARHPVRALVLAPTRELADQVANNVKTYSKHTQLRATVVFGGIDMKPQTA 140

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L+RG +VLI TPGR+LDH       ++ +E +V+DEADRMLD+GF+P +Q I S +P +
Sbjct: 141 ELKRGVEVLIATPGRLLDHIEAKNCSLSQVEYVVLDEADRMLDIGFLPDLQRILSYLPKS 200

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT + E++K++ ++LQ+P  +E   P++TA T+E  F        +       
Sbjct: 201 RQTLLFSATFSPEIKKLANSYLQDPILVETARPNATASTVEQRFYRVEDDDKRNAVKQLL 260

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                  +   I+F N K     L  + E+ G    A+HG+  Q  R+K L+ FK G + 
Sbjct: 261 ---RTRAITQSIVFVNSKLGAARLARAFERDGLRTQALHGDKSQDERLKALAAFKAGEVD 317

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+D+AARGLDI D+  VFNFDVP  AE+Y+HRIGRTGRAG  G A TLV+++D + +
Sbjct: 318 LLVATDVAARGLDIADLPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAITLVSRDDARLV 377

Query: 358 DAIEKLIEKKVD 369
             IEKLI+KK+D
Sbjct: 378 SDIEKLIKKKLD 389


>gi|157368742|ref|YP_001476731.1| ATP-dependent RNA helicase DeaD [Serratia proteamaculans 568]
 gi|157320506|gb|ABV39603.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
          Length = 653

 Score =  168 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 134/372 (36%), Positives = 221/372 (59%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 8   SFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLH 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+ +    + +  G  ++ Q + L 
Sbjct: 68  NLDAS---LKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRALR 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 125 QGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +         +         
Sbjct: 185 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVQGMRKNEA---LVRFL 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G+S  A++G+++Q  R + L   K+G + +++
Sbjct: 242 EAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILI 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 302 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 361

Query: 361 EKLIEKKVDWLN 372
           E+ ++  +  + 
Sbjct: 362 ERTMKLTIPEVE 373


>gi|116071349|ref|ZP_01468618.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
 gi|116066754|gb|EAU72511.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
          Length = 467

 Score =  168 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 158/430 (36%), Positives = 236/430 (54%), Gaps = 6/430 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L L  + V ++ +AGY+ PTPIQ  TIP VLQ  D+   AQTGTGKTA+F+LP++
Sbjct: 33  LTFEQLNLCAETVRSIREAGYLSPTPIQTLTIPEVLQGKDIMASAQTGTGKTAAFILPII 92

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +  + + +     +LIL PTRELAAQV  N + Y K   +    + GG+    Q K+L
Sbjct: 93  ELLRVEDKPKRLQVHSLILTPTRELAAQVEANAKGYTKYLGIRSDAVFGGVSIRPQVKRL 152

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D+L+ TPGR+LD  N+  +  +N++ILV+DEADRMLDMGFI  I+ +   +P  RQ
Sbjct: 153 QGGVDILVATPGRLLDLINQKTIRFDNLKILVLDEADRMLDMGFIRDIKKVIEFLPKKRQ 212

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++FSAT +  ++K++   L +P  I+ +  +  A TIEH                    
Sbjct: 213 NMMFSATFSAPIKKLALGLLNDPVEIKASVQNKAAPTIEHLVHPCDMARKVDLLCHL--- 269

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  K  ++F   K     +   L  Q     AIHGN  Q +R + L  FK G ++++
Sbjct: 270 IKTNEWKQVLVFARTKHGADKVVKILCHQHIKASAIHGNKSQGARTRALEGFKNGDVKIL 329

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + +V N D+PN AE+Y+HRIGRTGRAG +G A +LVA E+   + A
Sbjct: 330 VATDIAARGIDIHQLPYVINLDLPNVAEDYVHRIGRTGRAGENGHAISLVAAEEALLLKA 389

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IEK I   +  +   +      + K +  +    R+        TG   + K  SSQ+  
Sbjct: 390 IEKFIGNPLPKV--AVVGFEQKILKAEPLKQGGQRQRRSSQSVRTGQKAKAKPGSSQQRK 447

Query: 420 IPLKESEKIS 429
              ++S   S
Sbjct: 448 NDWRKSSNRS 457


>gi|229159014|ref|ZP_04287070.1| ATP-dependent RNA helicase dbpA [Bacillus cereus ATCC 4342]
 gi|228624433|gb|EEK81204.1| ATP-dependent RNA helicase dbpA [Bacillus cereus ATCC 4342]
          Length = 481

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 132/376 (35%), Positives = 219/376 (58%), Gaps = 6/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++  LS +V  A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++++S  ++  P  IE+     T + IEH     +    ++   L + + +
Sbjct: 182 LFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEH---TLFEVREEEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L +  +    IHG + Q  R  ++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEERFLEEIE 358

Query: 362 KLIEKKVDWLNGDLSS 377
             I   +   N  L  
Sbjct: 359 AYIGFAIPKANAPLKE 374


>gi|258405603|ref|YP_003198345.1| DEAD/DEAH box helicase domain-containing protein [Desulfohalobium
           retbaense DSM 5692]
 gi|257797830|gb|ACV68767.1| DEAD/DEAH box helicase domain protein [Desulfohalobium retbaense
           DSM 5692]
          Length = 403

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 138/409 (33%), Positives = 212/409 (51%), Gaps = 6/409 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    L  K+   +   G+ +PTPIQ + +PL L+  DV G+AQTGTGKTA+FVLP+L
Sbjct: 1   MHFDAFSLHEKITTGIAACGFTQPTPIQAQALPLALEGKDVLGLAQTGTGKTAAFVLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  G  R    R LI+ PTRELA Q      + G++  L  A + GG+  + Q  K+ 
Sbjct: 61  QRLMSGPRR--RVRALIVSPTRELAEQTVQVCNQLGRHTGLKAAAVYGGVGKKPQVDKIR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA++++  PGR+LDH       +  +E+LV+DEADRM DMGF+P I  I S +P  RQ 
Sbjct: 119 SGAEIIVACPGRLLDHLTDRSFNLKQVEMLVLDEADRMFDMGFLPDIHRILSYLPAQRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++       +              +   +   A Y   ++    +   + 
Sbjct: 179 MLFSATMPADIRA----LTEKLLVDPAEVRIDHEKPSANISQALYPVEAQHKTPMLLKIL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     ++F   K     L   L+  G+    +HGN+ Q  R   ++ F+ G   ++V
Sbjct: 235 EDEPDALTLVFTKTKHGARKLAQKLKASGYKAADLHGNLSQAQRRTAMAGFRSGRFTILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  +  V NFD+P+ AENY HRIGRTGR  R G A +L+A+ D+  + AI
Sbjct: 295 ATDIAARGIDVERIARVINFDMPDTAENYTHRIGRTGRIDRSGLAMSLIARGDMHLVRAI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           E+ + K+++    D      P E +  +  +   +      +     RR
Sbjct: 355 ERNLGKRLERKTIDQMEHLAPPELMRTSSKHKKPEGPRRSGRRPSQHRR 403


>gi|268680470|ref|YP_003304901.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618501|gb|ACZ12866.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 417

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 166/420 (39%), Positives = 248/420 (59%), Gaps = 5/420 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DL L+  ++ AV + GY  PTP+Q K IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MLFSDLNLNASILKAVQEEGYTHPTPVQEKAIPFILEGRDMLAGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L K       P  R LIL PTRELAAQV ++   YGK      A++ GG+    Q + 
Sbjct: 61  ELLLKKPRNKAKPSLRVLILTPTRELAAQVGESVRTYGKYLPFKSAVIFGGVGIHPQIQT 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+L+ TPGR+LDH ++G + +  I+  V+DEADRMLDMGFI  I+ + +L+P  R
Sbjct: 121 LKNGIDILVATPGRLLDHVSQGTINLKEIDTFVLDEADRMLDMGFIKDIRKVIALLPSKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +DE++ +  + L+NP  +EV   ++++E +    +       K+   L   
Sbjct: 181 QNLLFSATYSDEIKTLCASILKNPAVVEVARRNTSSELVNQRVIIVDC---KRKTALLGK 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S+   K  ++F   K +   +   L K G S  AIHGN  Q +R K L++FK G+I++
Sbjct: 238 LISEHKWKQVLVFTRTKHHANKVSEYLSKIGISASAIHGNKSQSARTKALADFKSGSIKV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV N ++PN AE+Y+HRIGRTGRAG  G+A +LV  ++  ++ 
Sbjct: 298 LVATDIAARGLDIDQLPHVINLELPNIAEDYVHRIGRTGRAGNEGEAISLVCVDEFDYLK 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEKLI+K ++    +    +P ++   I Q   A+      ++        +    +K 
Sbjct: 358 GIEKLIKKTLEREVVEGFEPDPTIKAEPIQQGRGAKPQGQPKRREHAPREYVEKRREKKR 417


>gi|161870287|ref|YP_001599457.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
           053442]
 gi|161595840|gb|ABX73500.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
           053442]
          Length = 457

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 159/447 (35%), Positives = 251/447 (56%), Gaps = 29/447 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +      +
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNL---LE 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G ++
Sbjct: 242 RLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           ++I++L   K+             +E+I+  +     +    P+K    + R++N     
Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRY--- 406

Query: 418 SHIPLKESEKISKLQQDIQENDADSLG 444
                 ES K  + +    EN A+  G
Sbjct: 407 ------ESAKAQREKNTRPENAANDAG 427


>gi|126179703|ref|YP_001047668.1| DEAD/DEAH box helicase domain-containing protein [Methanoculleus
           marisnigri JR1]
 gi|125862497|gb|ABN57686.1| DEAD/DEAH box helicase domain protein [Methanoculleus marisnigri
           JR1]
          Length = 527

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 143/373 (38%), Positives = 218/373 (58%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L +SPK + A+ D G+ +PTPIQ+ TIP +L   DV G AQTGTGKTA+F +P +
Sbjct: 5   ITFQELNISPKTLRAIEDMGFEEPTPIQVSTIPAILDGRDVTGQAQTGTGKTAAFGVPAI 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++ G    +    L+L PTRELA Q A+ F +  K++     L I  G P + Q + L
Sbjct: 65  ERVDTGSRETQ---VLVLSPTRELAIQTAEEFSRLAKHHQGINILPIYGGQPIDRQFRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LDH +RG L    ++++V+DEAD+MLDMGF   I+ I    P  RQ
Sbjct: 122 QRGVQIVVGTPGRVLDHLDRGTLSFGAVKVVVLDEADQMLDMGFREDIEKILDDTPRDRQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT+   + ++S+ F +NP+ I V     T   I           S+    +   L
Sbjct: 182 TILFSATLPKPILEISKKFQKNPEFISVARKEVTVPQI---EQLYLEVRSRDRLEILTRL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    +IF N K+ V +L   L+ +G+    +HG++ Q  R ++++ F+ G+I ++
Sbjct: 239 LDMYDPDLTLIFSNTKRGVDDLTTHLQARGYFAEGLHGDMKQTLRDRVMAKFRAGSIDIL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  V N+DVP   E YIHRIGRT RAGR G+A T V  ++   +  
Sbjct: 299 VATDVAARGIDVEDVDLVINYDVPQDIEYYIHRIGRTARAGRTGRAVTFVGPKEYFKLRT 358

Query: 360 IEKLIEKKVDWLN 372
           I+   + K+  + 
Sbjct: 359 IQNYTKIKIARIP 371


>gi|92116022|ref|YP_575751.1| DEAD/DEAH box helicase-like [Nitrobacter hamburgensis X14]
 gi|91798916|gb|ABE61291.1| DEAD/DEAH box helicase-like protein [Nitrobacter hamburgensis X14]
          Length = 477

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 166/467 (35%), Positives = 248/467 (53%), Gaps = 20/467 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL+  +  A+ +  Y+ PTPIQ +TIPL L   D+ GIAQTGTGKTASF LP+L 
Sbjct: 9   SFQDFGLADPITRALAEENYLTPTPIQTQTIPLALAGRDIVGIAQTGTGKTASFALPILH 68

Query: 62  ILEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L + R + +     +L   PTREL+ Q+ ++F  YG++  LT AL IGG+P   Q + +
Sbjct: 69  RLLQNRIKPQPKSCRVLVLSPTRELSGQILESFNAYGRHLRLTSALAIGGVPMGRQVRAV 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G +V++ TPGR+LD      L +  +E LV+DEADRMLDMGFI  I+ + + +P  RQ
Sbjct: 129 MQGVEVMVATPGRLLDLVQSNGLKLGQVEFLVLDEADRMLDMGFIHDIRKVVAKLPVKRQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM  ++ +++E  L++P R+ V   +ST + I    +                L
Sbjct: 189 TLFFSATMPKDIAELAEQMLRDPARVAVTPVASTVDRIAQRIIQVDHASK---PAFLAQL 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+ +   +IF   K     +  SL K G    AIHGN  Q  R ++L+ F+ G I+ +
Sbjct: 246 LKQEPVNRALIFTRTKHGADKVVKSLAKSGIRSDAIHGNKSQNHRERVLAAFRTGEIRTL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           VA+D+AARG+D+  + HV NFD+PN  E Y+HRIGRT RAG  G A +LVA  E++ ++ 
Sbjct: 306 VATDIAARGIDVDGISHVVNFDLPNVPETYVHRIGRTARAGADGAAISLVAGAEEMAYLR 365

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF-------DRRKK 411
            IEKLI   +            P ++     H   R   P     T          +  +
Sbjct: 366 DIEKLIRVALPR-----EDRRTPGQREAAPAHQQHRAGRPAQPSHTTRAGDAAPGAKGPR 420

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
             S   + +P  +  +  + +         + G +G   AF+  ++R
Sbjct: 421 RRSRHGNGVPQTKRPEAGRHEPSRSSQGGKAEGMQG--VAFLHRQSR 465


>gi|332662156|ref|YP_004444944.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332330970|gb|AEE48071.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 380

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 152/375 (40%), Positives = 227/375 (60%), Gaps = 6/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   ++ A+   GY  PTPIQ K IP++L+R D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MTFKELNLIDPILHALESEGYTIPTPIQQKAIPVLLERKDLLGCAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L + +   + PR    LIL PTRELA Q++++F  YG+N  L  A++ GG+    Q +
Sbjct: 61  QLLYQDKGLSKGPRQLKALILTPTRELAIQISESFGAYGRNCGLKHAVIFGGVNQSKQVE 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +  G D+L+ TPGR+LD  N+  L + +I   V+DEADRMLDMGF+  ++ I + +P  
Sbjct: 121 AIRGGLDILVATPGRLLDLMNQQLLSLQHINTFVLDEADRMLDMGFVHDVKRIITRLPQR 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+L FSATM  E+QK++   L NP ++EV+  SST E +E        +  +   +   
Sbjct: 181 RQSLFFSATMPPEIQKLANTILSNPVKVEVSPISSTTEMVEQMVYFVEKRDKRNLLIQLL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                  +K+ ++F   K     +   + K G    AIHGN  Q +R   L+ FKEG ++
Sbjct: 241 ---RSPNVKSALVFTRTKHGADKINRDIVKAGIRSNAIHGNKSQNARQSALNGFKEGKLR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HV N+D+PN  E Y+HRIGRTGRAG  G A +    E+  ++
Sbjct: 298 VLVATDIAARGIDVDNLSHVINYDLPNIPETYVHRIGRTGRAGASGIALSFCDSEERAYL 357

Query: 358 DAIEKLIEKKVDWLN 372
             I KLI K +  +N
Sbjct: 358 RDISKLIAKNIPSVN 372


>gi|304557826|gb|ADM40490.1| Cold-shock DEAD-box protein A [Edwardsiella tarda FL6-60]
          Length = 621

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 134/378 (35%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+  ++ A+ D GY KP+PIQ   IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLAAPIIEALNDLGYEKPSPIQAACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     ++ P+ L+L PTRELA QVA+    + K+ +    + +  G  ++ Q + L 
Sbjct: 67  NIDPS---LKAPQVLVLAPTRELAVQVAEAMADFSKHMHGINVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L + ++  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLSLTSLRGLVLDEADEMLRMGFIEDVETIMAQIPAEHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F+  P+ + + +  +T   I   +   Y     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVYGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G+S  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|269137769|ref|YP_003294469.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda EIB202]
 gi|267983429|gb|ACY83258.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda EIB202]
          Length = 634

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 134/378 (35%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+  ++ A+ D GY KP+PIQ   IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLAAPIIEALNDLGYEKPSPIQAACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     ++ P+ L+L PTRELA QVA+    + K+ +    + +  G  ++ Q + L 
Sbjct: 67  NIDPS---LKAPQVLVLAPTRELAVQVAEAMADFSKHMHGINVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L + ++  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLSLTSLRGLVLDEADEMLRMGFIEDVETIMAQIPAEHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F+  P+ + + +  +T   I   +   Y     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVYGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G+S  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|28900245|ref|NP_799900.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837460|ref|ZP_01990127.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|260361632|ref|ZP_05774659.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260880805|ref|ZP_05893160.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260896485|ref|ZP_05904981.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|260899501|ref|ZP_05907896.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|28808556|dbj|BAC61733.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749260|gb|EDM60045.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|308089237|gb|EFO38932.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308092075|gb|EFO41770.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308109261|gb|EFO46801.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|308112745|gb|EFO50285.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
          Length = 522

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 179/467 (38%), Positives = 261/467 (55%), Gaps = 22/467 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ K IP +L+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G   R    R LIL PTRELAAQV +N   YG++  L+ A++ GG+    Q  +L
Sbjct: 61  ERLSNGPRVRANQVRALILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMLRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +N+  +  + +E+LV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ +++  + NP  I VN  +STA T+E           KK A +   L
Sbjct: 181 NLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADV---KKKAPMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  ++F   K     L   L +Q     AIHGN  Q +R K L++FK G I+++
Sbjct: 238 IKDGDWKQVLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV   +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFA 357

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKIDIA--------------QHNHARKNNPIPQKS 403
           IE+LI++ +    L G   +   P  K+D                  N + +N P  +K 
Sbjct: 358 IERLIQEVLPRKELEGFAPTNVVPESKLDTRPIKPKKPKKPKKPKAPNASSENAPATEKK 417

Query: 404 T--GFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
              G ++ K+ ++   +      ++  +   +  +E    +     +
Sbjct: 418 AGNGANKPKRRFNGGNNGNKNSTNQGGAGKPKGNREGQGRAHSKPDD 464


>gi|296116253|ref|ZP_06834870.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977187|gb|EFG83948.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 431

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 154/372 (41%), Positives = 226/372 (60%), Gaps = 5/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L+  ++ A+ + GY  PTPIQ   IP +LQ  D+ G+AQTGTGKTA+F LP+L 
Sbjct: 3   TFADLHLAEPLLRALNEEGYTTPTPIQAGAIPYLLQGRDLLGLAQTGTGKTAAFALPILN 62

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L   + R         +L PTRELA+Q+AD+F  Y ++   T A++ GG+    Q + L
Sbjct: 63  HLLTSKGRAHPKGARALVLAPTRELASQIADSFASYARHMKFTHAVVFGGVGQGRQIEAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DVL+  PGR+LD   +G + +  +EILV+DEADRMLDMGF+  I+ I + +P  RQ
Sbjct: 123 RRGVDVLVAAPGRLLDLMGQGHVDLAGLEILVLDEADRMLDMGFVRDIRKIVATLPTDRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + +++   L++P  ++V  PSST + I    +       ++     +LL
Sbjct: 183 TLLFSATMPKSISELAHGLLRDPATVQVTPPSSTVDRIRQAVMYVDTGNKREA---LKLL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                ++  ++F   K     +   L + G +  AIHGN  Q +R + +S F+ G ++++
Sbjct: 240 VDSPKVERAVVFTLMKHEANKVAAFLNEHGITAEAIHGNKSQGARERAMSGFRSGAVKVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV HVFN+D+PN  E+Y+HRIGRT RAGR G A +L   E    +  
Sbjct: 300 VATDIAARGIDVDDVTHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSLCDAEQRAWLRD 359

Query: 360 IEKLIEKKVDWL 371
           IEK I KK+  +
Sbjct: 360 IEKTIGKKIPVV 371


>gi|156972680|ref|YP_001443587.1| ATP-dependent RNA helicase RhlB [Vibrio harveyi ATCC BAA-1116]
 gi|189040086|sp|A7MXT4|RHLB_VIBHB RecName: Full=ATP-dependent RNA helicase rhlB
 gi|156524274|gb|ABU69360.1| hypothetical protein VIBHAR_00338 [Vibrio harveyi ATCC BAA-1116]
          Length = 437

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 138/430 (32%), Positives = 210/430 (48%), Gaps = 11/430 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL P+V   +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADLGLKPQVTEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 E    +   PR +I+ PTRELA Q+ ++      +  L  AL  GG  ++ Q  
Sbjct: 70  HLLTTPEHEGRKPTQPRAIIMAPTRELAIQIFNDAAPLIASTGLKAALAYGGESYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+ G D+LI T GRI+D + +    +NNI+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           ++ L    + T   +     F       E        +T        +   ++    L Q
Sbjct: 190 KERLNMLFSATLSYRVQELAFEHMHN-PEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     I+F N K    ++   L   G  V  + G++ Q+ R KIL  F  G + 
Sbjct: 249 TLIEEEWPDRAIVFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGEVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   ++   ++
Sbjct: 309 LLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAINL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
             IE+ IE  +   + D    +  L  PL     A     R+ N    +S     + +  
Sbjct: 369 PPIEEYIEHAIPVSDYDASALIQDLPAPLRM--RAPRTQQRRTNTGGTRSGNRKPQGRRP 426

Query: 414 SSQKSHIPLK 423
              +   P +
Sbjct: 427 RQPRQSAPKQ 436


>gi|90577457|ref|ZP_01233268.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90440543|gb|EAS65723.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 654

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 141/378 (37%), Positives = 216/378 (57%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L L+  ++ A+ + G+V PTPIQ  +IPL+L   D  G AQTGTGKTA+F LP+L 
Sbjct: 33  EFRQLDLADTLLSALDNMGFVAPTPIQAASIPLLLTGTDALGKAQTGTGKTAAFSLPVLN 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKLE 120
            ++  + +   P+ +++ PTRELA QVA   +  G+N      L I G      Q + L+
Sbjct: 93  KVDLSQHK---PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRALK 149

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ D  +R +L ++ +   V+DEAD ML MGF+  +  I    P T Q 
Sbjct: 150 NGAHIVVGTPGRVKDLISRKQLQLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQR 209

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++++ + FL+NP RI+V   + T   +E  F         +        +
Sbjct: 210 VLFSATMPPIVKEIVDRFLRNPARIDVAGENRTVSKVEQQFWVVKGVEKDEAMSRLLETE 269

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D     I+F   +++   L   L  +GF   A+HG+I Q  R + + + K G I ++V
Sbjct: 270 DTD---ASIVFVRTRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILV 326

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  I
Sbjct: 327 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRTGKAILLVRTNQIRMLRTI 386

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E++ + +++ +   L  L
Sbjct: 387 ERVTKSRMEEIQLPLRDL 404


>gi|15221998|ref|NP_175911.1| DEAD box RNA helicase, putative (RH20) [Arabidopsis thaliana]
 gi|75333448|sp|Q9C718|RH20_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 20
 gi|12321578|gb|AAG50841.1|AC073944_8 ethylene-responsive RNA helicase, putative [Arabidopsis thaliana]
 gi|17065338|gb|AAL32823.1| Unknown protein [Arabidopsis thaliana]
 gi|22136216|gb|AAM91186.1| unknown protein [Arabidopsis thaliana]
 gi|332195071|gb|AEE33192.1| DEAD-box ATP-dependent RNA helicase 20 [Arabidopsis thaliana]
          Length = 501

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 137/414 (33%), Positives = 216/414 (52%), Gaps = 17/414 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+G    V+  V  AG+ +PTPIQ +  P+ ++  D+ GIA+TG+GKT S++LP + 
Sbjct: 100 SFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIV 159

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA Q+     K+G +  +    + GG+P   Q + L
Sbjct: 160 HVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDL 219

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 220 QKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQ 279

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL +SAT   E++++S+ FL NP ++ + +    A       V   ++  K    L +LL
Sbjct: 280 TLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKY-NKLVKLL 338

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        ++F + KK    +   L   G+   +IHG+  Q  R  +LS F+ G   +M
Sbjct: 339 EDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIM 398

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD+ DV +V N+D P   E+Y+HRIGRTGRAG  G A+T     + +    
Sbjct: 399 TATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKE 458

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           +  ++++    ++ +L+S+               R   P P    GF  R    
Sbjct: 459 LTNILQEAGQKVSPELASM--------------GRSTAPPPPGLGGFRDRGSRR 498


>gi|225579790|gb|ACN94070.1| unknown [Drosophila melanogaster]
          Length = 1198

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 137/447 (30%), Positives = 230/447 (51%), Gaps = 12/447 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 511 TWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 570

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +           +I+ PTREL  Q+  +  K+ K+  L    + GG     Q  +L
Sbjct: 571 HILDQPSMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAEL 630

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 631 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRP 690

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   L+ P  + V   S   + +E            K   L 
Sbjct: 691 DRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHV--VILNDDAKFFKLL 748

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +FK G +
Sbjct: 749 ELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKV 808

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  E  ++
Sbjct: 809 RLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRY 868

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN-----HARKNNPIPQKSTGFDRRKK 411
              I + ++     +  +L +L    + +  A+                     F+  K+
Sbjct: 869 AGDIIRAMDLSGTLIPAELQALWTEYKALQEAEGKTVHTGGGFSGKGFKFDEQEFNAAKE 928

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQEN 438
           +   QK+ + L +S+    ++QDI + 
Sbjct: 929 SKKLQKAALGLADSDDEEDIEQDIDQQ 955


>gi|195493240|ref|XP_002094331.1| GE20258 [Drosophila yakuba]
 gi|194180432|gb|EDW94043.1| GE20258 [Drosophila yakuba]
          Length = 789

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 138/411 (33%), Positives = 218/411 (53%), Gaps = 4/411 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   G   +++ AV  A Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ PML 
Sbjct: 270 SFGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLM 329

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   +       P  LIL PTREL+ Q+ +  +K+GK YNL V    GG     Q+K L
Sbjct: 330 HVMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKAL 389

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+GA++++ TPGR++D        +  +  LV+DEADRM  MGF P +++I + V   RQ
Sbjct: 390 EQGAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQ 449

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT    +++++ + L +P RI     +   + I            K   LL  L+
Sbjct: 450 CLMFSATFKKRIERLARDVLTDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLVHLV 509

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +      + +IF  +K +   + ++L  + ++   +HG++DQ  R K+++ FK     ++
Sbjct: 510 KFLSEG-SVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDIL 568

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + +V N+D     E + HRIGRTGRAG  G AFTLV  +D +    
Sbjct: 569 VATDVAARGLDIPHIKNVVNYDTARDIETHTHRIGRTGRAGEKGNAFTLVTDKDKEFAGH 628

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST-GFDRR 409
           + + +E     +  DL  L         ++    +   P    +  G+  R
Sbjct: 629 LVRNLEGADQQVPDDLMELAMKSSWFRSSRFKQGKSKRPANTHTGLGYRER 679


>gi|218780159|ref|YP_002431477.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761543|gb|ACL04009.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 489

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 132/403 (32%), Positives = 213/403 (52%), Gaps = 7/403 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  L   ++  + DAG+ + TPIQ + +P+ L   D+ G AQTGTGKTA+F++PM +
Sbjct: 24  KFADFDLPETLLEGLKDAGFERCTPIQAQVLPVALSGKDIAGQAQTGTGKTAAFLVPMFS 83

Query: 62  ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L     R +  P  LI+ PTRELA Q+ +  E  G + + T+A  IGG+ +  Q   L+
Sbjct: 84  KLLGLENRSKTLPSALIVAPTRELALQIYEEAEVLGGHTDFTIAQAIGGMDYRKQMDILK 143

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GAD+LI TPGRI+D++ +G    + I+ +VIDEADR+LD+GF   ++ I   +P   + 
Sbjct: 144 QGADILIGTPGRIIDYYKQGIFKTHAIKSVVIDEADRLLDLGFAKDMRYILRKMPHYEKR 203

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
                + T   + +   +        ++             +  +    +K   L   + 
Sbjct: 204 QSMLFSATLSYRVLELTYDYMNLPEFISVTPEEVTVKGIDQILYHVGQDQKL-PLLLGVF 262

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     ++F N K  V  + H L   GF    I G++ QR R++++  FK G + ++V
Sbjct: 263 KNEDWTRALVFVNTKSGVEFVAHKLRGNGFPAGGITGDLPQRKRLQLMERFKNGELSILV 322

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RG+ + DV HV N+D+P   ENY+HRIGRT RAG+ GKA +L  +  + H++ +
Sbjct: 323 ATDVASRGIHVEDVSHVINYDLPQDPENYVHRIGRTARAGKTGKAISLACEHYVFHLEPM 382

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           E++I   +     +           D A    ARK  P P + 
Sbjct: 383 EEMIGLSLPVEWPEEEYFQE-----DKAGPMPARKRGPKPDQG 420


>gi|288959329|ref|YP_003449670.1| DEAD-box ATP-dependent RNA helicase [Azospirillum sp. B510]
 gi|288911637|dbj|BAI73126.1| DEAD-box ATP-dependent RNA helicase [Azospirillum sp. B510]
          Length = 512

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 157/402 (39%), Positives = 236/402 (58%), Gaps = 11/402 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ LGL   ++ AV + GY   TPIQ   IPL+L   DV G+AQTGTGKTA+F LP+L 
Sbjct: 10  EFSGLGLIEPLLRAVAEEGYSTATPIQAGAIPLLLAGRDVLGLAQTGTGKTAAFTLPILQ 69

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L + + RV  + PR LIL PTRELA Q+ D+F  YG++  +   ++ GG+    Q   +
Sbjct: 70  RLFQNKKRVAAKSPRVLILTPTRELALQIGDSFTTYGRHLPIRRTVIHGGVGQSPQVAAI 129

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +VLI TPGR+LD   +  + +  IE+ V+DEADRMLDMGFI  ++ + +++P  RQ
Sbjct: 130 ARGVEVLIATPGRLLDLMAQNHVNLGAIEVFVLDEADRMLDMGFIRDVRKVVAVLPKERQ 189

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM D +  ++ + L + +RIEV   S+T E I    +       ++        
Sbjct: 190 TLLFSATMPDAVVDLANSILTDAERIEVTPQSTTVERINQRVLFVERGDKRRLLADLLED 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++       I+F   K     +   L+K G +  AIHG+  Q +R++ L +F+ G ++ +
Sbjct: 250 EAM---ARTIVFARTKHGADRIADHLKKAGITADAIHGDKSQSARVRALESFRNGELRAL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV NFD+PN  E+Y+HRIGRT RAG  G A +    E++ ++  
Sbjct: 307 VATDIAARGIDIDGISHVINFDLPNEPESYVHRIGRTARAGTDGSAVSFCDHEEVGYLKD 366

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           IEK I + +       +  + P    D+AQ + + K  P P+
Sbjct: 367 IEKTIRQPIP------ADASHPYHAADVAQIHASSKPPPRPK 402


>gi|163751537|ref|ZP_02158759.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161328545|gb|EDP99698.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 444

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 157/441 (35%), Positives = 247/441 (56%), Gaps = 16/441 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P+++ A+ + GY + TP+Q + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 10  MRFESFSFAPEILRAISECGYQEMTPVQQEAIPAIRRGQDVLASAQTGTGKTAAFALPIL 69

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       +   T   IL PTRELAAQ+ADN   Y K  +++V  + GG+  ++Q +K
Sbjct: 70  QKMFDNPMPTQRSNTRALILTPTRELAAQIADNISDYSKYIDVSVLTIYGGVKVDSQAQK 129

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RG D+++ TPGR+L+H     L ++N+E LV+DEADRMLDMGFI  IQ I   V   R
Sbjct: 130 LKRGTDIIVATPGRLLEHLQACNLNLSNVEFLVLDEADRMLDMGFISDIQKIMQAVNKQR 189

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +  ++K++ + L  PK I +N+ +STA+T+         +  ++       
Sbjct: 190 QNLLFSATFSSAVKKLANDMLVKPKLISLNSQNSTADTVSQVVYPVEQRRKRELLSEL-- 247

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  +IF   +     L   L   G +   +HG   Q +R + L  FKEG ++ 
Sbjct: 248 -IGKKNWQQVLIFTATRDAADKLVKELNLDGITSSVVHGEKAQGNRRRALREFKEGKVRA 306

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDI D+ +V N+D+P  AE+Y+HRIGRTGRAG+ G A +LV++E+ + + 
Sbjct: 307 LVATEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEERTLY 366

Query: 359 AIEKLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            IE LI KK+  +       G    L   L+K         R++N   Q        ++N
Sbjct: 367 DIETLIGKKLRRITIPGYEVGSRDMLIKQLQKRRSFGKKQQREDNAGAQVVG-----ERN 421

Query: 413 YSSQKSHIPLKESEKISKLQQ 433
              ++  +    +   +K+++
Sbjct: 422 MQGRRVKVKNSSNRPATKIKK 442


>gi|16611843|gb|AAL27386.1|AF426171_17 RhlE [Yersinia pestis]
          Length = 421

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 160/408 (39%), Positives = 243/408 (59%), Gaps = 7/408 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY+ PTPIQ + IP+VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L + +  +   R  R LIL PTRELAAQ+ +N + Y K   L   ++ GG+    Q  
Sbjct: 61  QLLSQDQQPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD  ++  + ++ IEILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E I            ++      
Sbjct: 181 RQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKREL---LS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK+G I+
Sbjct: 238 QMIGEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA R G+A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
             IE+L+++++  +  D    +P + K D  Q+    +    P    G
Sbjct: 358 RDIERLLKREIPRIALDGYEPDPSI-KADPIQNGRQGRGAQRPGMGRG 404


>gi|298293432|ref|YP_003695371.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
 gi|296929943|gb|ADH90752.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
          Length = 557

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 156/465 (33%), Positives = 247/465 (53%), Gaps = 17/465 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL+  ++ A+ +A +  PTPIQ + +P VL   D+ GIAQTGTGKTA+F LP+L 
Sbjct: 8   TFPELGLAEPILKALAEANHSTPTPIQAQAVPQVLAGRDLVGIAQTGTGKTAAFALPILH 67

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L   R R         +L PTREL+ Q+ ++F  YGK+   + AL IGG+P   Q + L
Sbjct: 68  HLVTKRLRPERRSARALVLSPTRELSGQILESFRLYGKHVRPSTALAIGGVPIGRQARSL 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D      + ++ +E+ V+DEAD+MLDMGFI  I++I + +P  R+
Sbjct: 128 AGGVDVLVATPGRLVDLLENNAVRLDMVEVFVLDEADQMLDMGFIHAIRSIVARLPHKRR 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSATM  E++K+++  L +P R+ V   + TA+ IE     T         +     
Sbjct: 188 NLFFSATMPREIEKLADTLLSDPVRVAVTPVAKTADKIEQKVFFTDRAGKPNLLVEVL-- 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             + T+   ++F   K     +  SL   G +  AIHGN  Q  R + L+ F++G ++++
Sbjct: 246 -GEPTLDRALVFSRTKHGADRVVKSLAGAGINAEAIHGNKSQPQRERALAAFRQGVVKVL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P V HV N+D+PN  E+Y+HRIGRT RAGR G A +    E+   +  
Sbjct: 305 VATDIAARGIDVPGVSHVINYDLPNVPESYVHRIGRTARAGREGIAISFCDGEERPFLRD 364

Query: 360 IEKLIEKKVDWLNGDLS-----SLNPPLEKIDIA-------QHNHARKNNPIPQKSTGFD 407
           IE+LI+  +  ++         +  P   + D +       + +   + +  P++  G  
Sbjct: 365 IERLIKLTIPSVDRRGETRRDGTTRPVAGREDNSFREERGPREHRGPREDRGPRQDRGPR 424

Query: 408 RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAF 452
           R  +     +   P   S +    ++  +         RG  P  
Sbjct: 425 REGEQRPFHRGPRPEHRSGEARSEERGPRREGEQRPFHRGPRPDH 469


>gi|229176129|ref|ZP_04303622.1| ATP-dependent RNA helicase dbpA [Bacillus cereus MM3]
 gi|228607364|gb|EEK64693.1| ATP-dependent RNA helicase dbpA [Bacillus cereus MM3]
          Length = 481

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 147/448 (32%), Positives = 248/448 (55%), Gaps = 18/448 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++  LS +V  A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++K+S  ++  P  IE+     T + IEH     +    ++   L + +  
Sbjct: 182 LFSATLPEDVEKLSRTYMNAPTHIEIKAAGITTDKIEH---TLFEVREEEKLSLLKDVTM 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG +GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNNGKAITFITPYENRFLEEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKI--DIAQHNHARKNNPIPQKSTGFDRRK---KNYSSQ 416
           + I  ++         L P  E++    A         PI +K    D  K   K Y + 
Sbjct: 359 EYIGFEIP------KELTPSKEEVIKGKAVFEEKIYAKPIIKKDKNADLNKGIMKLYFNG 412

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
                ++  + +  + + IQ   AD +G
Sbjct: 413 GKKKKIRAVDFVGTIAK-IQGVSADDIG 439


>gi|170750207|ref|YP_001756467.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656729|gb|ACB25784.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 506

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 147/382 (38%), Positives = 226/382 (59%), Gaps = 6/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL+  V+ A+ +AGYV PTPIQ + IP  ++  D+CGIAQTGTGKTA+F LP+L 
Sbjct: 3   QFTDFGLAQPVLRALSEAGYVAPTPIQAQAIPPAMEGRDLCGIAQTGTGKTAAFALPILH 62

Query: 62  ILEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L     R       +L   PTRELA Q+A++F  YG++ + T  ++ GG+    Q + L
Sbjct: 63  RLSLSDRRAPRRGCRVLVLSPTRELANQIAESFTDYGRHLSYTTTVVFGGVTISRQERAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR++D  +R  L +  +EILV+DEAD+MLD+GFI  ++ I  ++P  RQ
Sbjct: 123 APGVDILVATPGRLIDLVDRRSLTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPEKRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +L FSATM   +  ++  +L +P ++ V   ++TAE +E   +  +    +        +
Sbjct: 183 SLFFSATMPKNIAGLAAQYLTDPVQVAVTPVATTAERVEQEVIFVHTGAKQAL---LGHI 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                ++  ++F   K     +   L+K G +  AIHGN  Q  R + L+ FK+G+ +++
Sbjct: 240 LRDPAIERVLVFTRTKHGADRVVRGLDKVGIAAAAIHGNKSQPQRERALAAFKDGSCRVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV NFD+PN  E+Y+HRIGRT RAG  G A +    E+  ++  
Sbjct: 300 VATDIAARGIDVEGVSHVVNFDLPNVPESYVHRIGRTARAGADGLAISFCNDEEKAYLRD 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPP 381
           IE++  +KV  + G      PP
Sbjct: 360 IERVTRQKVP-VAGFPEGFTPP 380


>gi|156837514|ref|XP_001642781.1| hypothetical protein Kpol_1005p11 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160358661|sp|A7TS37|RRP3_VANPO RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|156113348|gb|EDO14923.1| hypothetical protein Kpol_1005p11 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 506

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 142/426 (33%), Positives = 228/426 (53%), Gaps = 8/426 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L P+++ A  +  + KPTPIQ ++IP  LQ HD+ G+AQTG+GKTA+F +P+L 
Sbjct: 87  SFSDLDLVPELIEACKNLNFAKPTPIQARSIPPALQGHDIIGLAQTGSGKTAAFAIPILN 146

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   +         IL PTRELA Q+ + F+  G    +  A ++GG+    Q + L R
Sbjct: 147 RLWHDQQPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSACIVGGMNMMDQARDLMR 203

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH  N     +  ++ LV+DEADR+LDM F P +  I  ++P   +T
Sbjct: 204 KPHIIIATPGRLMDHLENTRGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQGRT 263

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSATMT ++ K+    L NP +  V+    T +T+    +           +     
Sbjct: 264 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGLKNTYLIYL--- 320

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   K  I+F   K N   +        FS  A+HG+++Q  R   L  FK G   ++
Sbjct: 321 MNEFIGKTIIVFTRTKANAERITTLANLLEFSATALHGDLNQNQRTGSLDLFKAGRRSIL 380

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV++ D++ I  
Sbjct: 381 VATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 440

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE ++ KK+   N +  ++    + +D A      + N   ++     + ++   + +  
Sbjct: 441 IEDVLGKKLPKENVNKDAILTLRDSVDKANGEVVMELNRRNKEKIARGKGRRGRMAARDD 500

Query: 420 IPLKES 425
           +   E 
Sbjct: 501 MDKGER 506


>gi|16272370|ref|NP_438583.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae Rd KW20]
 gi|260580515|ref|ZP_05848343.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae RdAW]
 gi|1174440|sp|P44701|SRMB_HAEIN RecName: Full=ATP-dependent RNA helicase srmB homolog
 gi|1573394|gb|AAC22078.1| ATP-dependent RNA helicase (srmB) [Haemophilus influenzae Rd KW20]
 gi|260092857|gb|EEW76792.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae RdAW]
          Length = 439

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 138/398 (34%), Positives = 212/398 (53%), Gaps = 6/398 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP + 
Sbjct: 5   QFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEESDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++       
Sbjct: 65  HLLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QT
Sbjct: 125 TNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL       L N     V+   S  E  +      +A  ++    L     
Sbjct: 185 LLFSATLEGELLVDFAERLLNDPVK-VDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +  GI+F  ++++   L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 244 ETEEVTRGIVFIRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPPL--EKIDIAQHNHAR 394
           ++  E+  K   L G      PP   E   +++   AR
Sbjct: 364 KRYTEEILKARILAGLEPRTKPPKDGEVKSVSKKQKAR 401


>gi|241618030|ref|XP_002408280.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215502947|gb|EEC12441.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 1025

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 138/423 (32%), Positives = 217/423 (51%), Gaps = 7/423 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++A  G+S KV+  +   G+ KPTPIQ + IP V+   D+ GIA+TG+GKT +F+LPM  
Sbjct: 350 NWAQCGVSKKVMEVLKKHGFEKPTPIQAQAIPAVMSGRDLIGIAKTGSGKTLAFLLPMFR 409

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P  +I+ PTRELA Q+  + +K+ K+ +L V  + GG     Q   L
Sbjct: 410 HILDQPPLEDDDGPIAVIMTPTRELAMQITKDCKKFTKSLSLRVVCVYGGTGISEQIADL 469

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     N           +V+DEADRM DMGF P +  I   V  
Sbjct: 470 KRGAEIIVCTPGRMIDMLAANNGRVTNFRRTTYVVLDEADRMFDMGFEPQVMRIVDSVRP 529

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   L  P  I V   S   +               K   L 
Sbjct: 530 DRQTVMFSATFPRQMEALARRILMKPIEILVGGRSVVCKE--VEQHIVIINDEDKFFKLL 587

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + I+F +++++   L   L K   +  A+HG IDQ  R   + +FK G +
Sbjct: 588 ELLGLYQDKGSAIVFVDKQEHADVLLKDLMKASHNAMALHGGIDQFDRDSTIVDFKAGKV 647

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  +  ++
Sbjct: 648 GVLIATSVAARGLDVKHLILVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITDDQGRY 707

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              + K +E   + +  DL  L    +    A+    R  +    K   FD  + +  S+
Sbjct: 708 AADLSKALELSGNPVPEDLQRLFNNYKAKQEAEGKKVRGGSGFSGKGFKFDEAESHLKSE 767

Query: 417 KSH 419
           K  
Sbjct: 768 KKK 770


>gi|156973702|ref|YP_001444609.1| hypothetical protein VIBHAR_01406 [Vibrio harveyi ATCC BAA-1116]
 gi|156525296|gb|ABU70382.1| hypothetical protein VIBHAR_01406 [Vibrio harveyi ATCC BAA-1116]
          Length = 411

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 151/414 (36%), Positives = 235/414 (56%), Gaps = 6/414 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV   GY KPT IQ K IP+VL   ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSAPITDAVKALGYEKPTSIQQKAIPIVLSGRNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G   R +  R +IL PTRELA QV  + E YGKN  L    + GG+ +  Q + L
Sbjct: 61  EKLSQGETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVDYAPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR++D + +  +  + +E+LV+DEAD+MLDMGFI  I  I   +P   Q
Sbjct: 121 IEGVDIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIVDCMPEDIQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT+++ ++ +++N + +P+ I   + +  + +  +             + L   +
Sbjct: 181 SLLFSATLSNPVRDLAKNAIVDPEEI---SIAKHSASKSNIKQWITTVDKDMKSSLLSHM 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++     ++F   K     L   LEK+G    A H   +QR R +++  FK G IQ +
Sbjct: 238 LNENDWSQVLVFIETKHGAAKLVTQLEKRGIVAEAFHSGRNQRVRQELIEQFKAGEIQYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI ++  V N+D+P  A+ Y+HRIGRTGRAG  G+A +LV+K+D K++  
Sbjct: 298 VATGVAARGIDIDNLPVVINYDLPYPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCM 357

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           IE  +   ++   + G       P+  ++    N  +  +  P++  G  R  K
Sbjct: 358 IESRLGHLLERVEIEGFAPRKPVPISILNYVPKNKRKPQDQRPRRDNGDKRDSK 411


>gi|225579808|gb|ACN94086.1| unknown [Drosophila melanogaster]
          Length = 1198

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 137/447 (30%), Positives = 230/447 (51%), Gaps = 12/447 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 511 TWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 570

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +           +I+ PTREL  Q+  +  K+ K+  L    + GG     Q  +L
Sbjct: 571 HILDQPSMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAEL 630

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 631 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRP 690

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   L+ P  + V   S   + +E            K   L 
Sbjct: 691 DRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHV--VILNDDAKFFKLL 748

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +FK G +
Sbjct: 749 ELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKV 808

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  E  ++
Sbjct: 809 RLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRY 868

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN-----HARKNNPIPQKSTGFDRRKK 411
              I + ++     +  +L +L    + +  A+                     F+  K+
Sbjct: 869 AGDIIRAMDLSGTLIPAELQALWTEYKALQEAEGKTVHTGGGFSGKGFKFDEQEFNAAKE 928

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQEN 438
           +   QK+ + L +S+    ++QDI + 
Sbjct: 929 SKKLQKAALGLADSDDEEDIEQDIDQQ 955


>gi|225579799|gb|ACN94078.1| unknown [Drosophila melanogaster]
          Length = 1195

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 137/447 (30%), Positives = 230/447 (51%), Gaps = 12/447 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 511 TWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 570

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +           +I+ PTREL  Q+  +  K+ K+  L    + GG     Q  +L
Sbjct: 571 HILDQPSMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAEL 630

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 631 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRP 690

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   L+ P  + V   S   + +E            K   L 
Sbjct: 691 DRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHV--VILNDDAKFFKLL 748

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +FK G +
Sbjct: 749 ELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKV 808

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  E  ++
Sbjct: 809 RLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRY 868

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN-----HARKNNPIPQKSTGFDRRKK 411
              I + ++     +  +L +L    + +  A+                     F+  K+
Sbjct: 869 AGDIIRAMDLSGTLIPAELQALWTEYKALQEAEGKTVHTGGGFSGKGFKFDEQEFNAAKE 928

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQEN 438
           +   QK+ + L +S+    ++QDI + 
Sbjct: 929 SKKLQKAALGLADSDDEEDIEQDIDQQ 955


>gi|229184685|ref|ZP_04311885.1| ATP-dependent RNA helicase [Bacillus cereus BGSC 6E1]
 gi|228598789|gb|EEK56409.1| ATP-dependent RNA helicase [Bacillus cereus BGSC 6E1]
          Length = 447

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 146/440 (33%), Positives = 238/440 (54%), Gaps = 12/440 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 3   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 63  KIDPESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE           +      + + 
Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFVM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EK +   +     +     P ++++D       +       +    D R+ + S  K   
Sbjct: 357 EKTLGAPIQREIIE----QPKIKRVDENGKPLPKPAPKKSGEYRQRDSREGSRSGSKGRT 412

Query: 421 PLKESEKISKLQQDIQENDA 440
              +S   S+ + +   N  
Sbjct: 413 -RNDSRNSSRNENNRSFNKP 431


>gi|254372784|ref|ZP_04988273.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570511|gb|EDN36165.1| ATP-dependent RNA helicase RhlE [Francisella novicida GA99-3549]
          Length = 442

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 152/403 (37%), Positives = 237/403 (58%), Gaps = 8/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+  +  A+   GY KPTPIQ + IP+VL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MKFSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  +  +++   V+DEADRMLDMGFI  ++ I  L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQSAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++  FL NP+ +  +  ++T + I                +     
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   ++F   K     +   L   G S  AIHGN  Q +R K L++FK   I ++
Sbjct: 238 IKDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+PN AE+Y+HRIGRTGRAG+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           IE LI   +  + L G  ++ N P+  +  +    A+K + + 
Sbjct: 358 IEHLIGHLLPREELEGFEATHNVPITSM--SHKTKAKKIDEVK 398


>gi|146197837|dbj|BAF57631.1| DEAD box polypeptide 48 protein [Dugesia japonica]
          Length = 376

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 127/375 (33%), Positives = 196/375 (52%), Gaps = 5/375 (1%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
             + L   ++  +   G+ KP+ IQ +TI  +++  DV   AQ+GTGKT+   L  ++ L
Sbjct: 5   DKMSLKEDLLRGIYAYGFEKPSAIQARTIKQIVKGRDVIAQAQSGTGKTS---LIAISSL 61

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
           +     +R  + LIL PTRELA Q        G   N+     IGG       KKL+ G 
Sbjct: 62  QLTDINLRETQVLILSPTRELAQQTQKVILALGDYMNVQCHACIGGASMAQDMKKLDYGQ 121

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            ++  TPGR+ D   R  L    I  LV+DEAD MLD GF   I  I   +P   Q +L 
Sbjct: 122 HIVSGTPGRVFDMMQRRNLRTGKISTLVLDEADEMLDKGFKEQIYQIYRYLPPGTQVILI 181

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT+  ++ +++  F+ NP RI V     T E I+  FV+   +  K   L    +    
Sbjct: 182 SATLPHDILEMTSKFMTNPIRILVKRDELTLEGIKQYFVSVEREEWKFDTLCD--IYDTV 239

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
           T+   +IFCN K+ V  L   + +  F+V +IHG++ Q  R +I   F+    ++++ +D
Sbjct: 240 TVTQVVIFCNTKRKVEWLTDKMRENNFTVSSIHGDMPQGERDEITRQFRALETRVLITTD 299

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           + ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +D++ +  IE+ 
Sbjct: 300 VWARGIDVQHVSLVINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKSDDVRILRDIEQF 359

Query: 364 IEKKVDWLNGDLSSL 378
              ++D +  +++ L
Sbjct: 360 YATQIDEMPMNMAEL 374


>gi|94676631|ref|YP_589051.1| inducible ATP-independent RNA helicase [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|94219781|gb|ABF13940.1| inducible ATP-independent RNA helicase [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 591

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 140/399 (35%), Positives = 233/399 (58%), Gaps = 9/399 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA +GL+  ++ A+ D GY  P+PIQ + IP +L   DV GIAQTG+GKTA+F LP+L 
Sbjct: 7   SFAKMGLNILLLNALKDLGYETPSPIQAECIPHLLAGRDVLGIAQTGSGKTAAFALPLLH 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            +     ++  P+ L+L PTRELA QV++ +  + K       + +  G  ++ Q + L 
Sbjct: 67  NI---NLKLNAPQVLVLAPTRELAVQVSEAYSDFAKYMKGINVVALYGGQRYDVQLRLLR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G+ V++ TPGR+LDH  RG L ++++  LV+DEAD ML MGFI  ++NI + +P   QT
Sbjct: 124 QGSQVIVGTPGRLLDHLKRGTLDLSHLHGLVLDEADEMLRMGFIEDVENILAQIPAKHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F+  PK + + +  +    I     + +  + +          
Sbjct: 184 ALFSATMPEAIRRITRRFMTEPKEVHIESNIANRPDI---SQSYWTVHGRCKNKALARFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  SLE+ G++  A++G+++Q  R + LS  K G++ +++
Sbjct: 241 EVEDFDAAIIFVRTKNATLEVSQSLEQNGYNSAALNGDMNQALREQTLSRLKNGSLDVLI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+YIHRIGRTGRAGR G+A   V + + + +  I
Sbjct: 301 ATDVAARGLDVDRISLVVNYDIPLDSESYIHRIGRTGRAGRAGRALLFVEQRERRLLRNI 360

Query: 361 EKLIEKKVDWLN-GDLSSLNP-PLEKIDIAQHNHARKNN 397
           E+L++  +  +       LN   LEK+ +   NH +  +
Sbjct: 361 ERLMKLNIPEVQLPTAEKLNTRRLEKLAVKIKNHLKNRD 399


>gi|15677281|ref|NP_274434.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
 gi|7226661|gb|AAF41783.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
 gi|316985805|gb|EFV64748.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           H44/76]
 gi|319410671|emb|CBY91048.1| putative ATP-dependent RNA helicase [Neisseria meningitidis WUE
           2594]
 gi|325128474|gb|EGC51354.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           N1568]
 gi|325130493|gb|EGC53250.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           OX99.30304]
 gi|325136534|gb|EGC59138.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M0579]
 gi|325140373|gb|EGC62894.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           CU385]
 gi|325199961|gb|ADY95416.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           H44/76]
          Length = 457

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 159/447 (35%), Positives = 251/447 (56%), Gaps = 29/447 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +      +
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNL---LE 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G ++
Sbjct: 242 RLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           ++I++L   K+             +E+I+  +     +    P+K    + R++N     
Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRY--- 406

Query: 418 SHIPLKESEKISKLQQDIQENDADSLG 444
                 ES K  + +    EN A+  G
Sbjct: 407 ------ESAKAQREKNTRPENAANDAG 427


>gi|312376439|gb|EFR23520.1| hypothetical protein AND_12717 [Anopheles darlingi]
          Length = 696

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 128/402 (31%), Positives = 208/402 (51%), Gaps = 4/402 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
            F + G   +++  +  AG+  PTPIQ +  P+ L   D+ GIA+TG+GKT S+++P  +
Sbjct: 97  TFEESGFPAEIIDELRYAGFTAPTPIQAQGWPIALSGRDMVGIAKTGSGKTLSYLIPALI 156

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +    R   P  LIL PTRELA Q+    + +G+        L GG     Q + L
Sbjct: 157 HIDQQPRLRRGDGPIALILSPTRELAQQIKQVADDFGRALKYKNTCLFGGGKKRKQQEDL 216

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G +++I TPGR++D  +  +  +     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 217 EYGVEIVIATPGRLIDFLSMNQTNLRRCSYLVLDEADRMLDMGFEPQIRTIIEQIRPDRQ 276

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQL 238
           TL++SAT  D + ++ +++L++  +I V +    A       +    +  K+    +   
Sbjct: 277 TLMWSATWPDVVARLVKDYLKDYVQINVGSLKLAANHNILQIIDVCQESEKESKLSILLR 336

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               +     IIF   KK V ++   +++ G+    IHG+  Q  R   L +F+ G   +
Sbjct: 337 EIMAEKECKTIIFIETKKRVDDITRKVKRDGWPARCIHGDKSQNERDSTLKSFRSGRTPI 396

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLD+ DV  V NFD P  +E+YIHRIGRTGR    G A+T     +     
Sbjct: 397 LIATDVAARGLDVDDVKFVINFDFPTTSEDYIHRIGRTGRCDNTGTAYTFFTPNNAAKAR 456

Query: 359 AIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPI 399
            +  ++++    +N  L  L N  ++  D+ + +     +PI
Sbjct: 457 DLIDVLKEAKQVINPKLVELANMKVKARDLDRQSRVEDGSPI 498


>gi|225579844|gb|ACN94118.1| unknown [Drosophila melanogaster]
          Length = 1224

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 137/447 (30%), Positives = 230/447 (51%), Gaps = 12/447 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 511 TWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 570

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +           +I+ PTREL  Q+  +  K+ K+  L    + GG     Q  +L
Sbjct: 571 HILDQPSMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAEL 630

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 631 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRP 690

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   L+ P  + V   S   + +E            K   L 
Sbjct: 691 DRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHV--VILNDDAKFFKLL 748

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +FK G +
Sbjct: 749 ELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKV 808

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  E  ++
Sbjct: 809 RLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRY 868

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN-----HARKNNPIPQKSTGFDRRKK 411
              I + ++     +  +L +L    + +  A+                     F+  K+
Sbjct: 869 AGDIIRAMDLSGTLIPAELQALWTEYKALQEAEGKTVHTGGGFSGKGFKFDEQEFNAAKE 928

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQEN 438
           +   QK+ + L +S+    ++QDI + 
Sbjct: 929 SKKLQKAALGLADSDDEEDIEQDIDQQ 955


>gi|225579817|gb|ACN94094.1| unknown [Drosophila melanogaster]
          Length = 1227

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 137/447 (30%), Positives = 230/447 (51%), Gaps = 12/447 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 514 TWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 573

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +           +I+ PTREL  Q+  +  K+ K+  L    + GG     Q  +L
Sbjct: 574 HILDQPSMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAEL 633

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 634 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRP 693

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   L+ P  + V   S   + +E            K   L 
Sbjct: 694 DRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHV--VILNDDAKFFKLL 751

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +FK G +
Sbjct: 752 ELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKV 811

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  E  ++
Sbjct: 812 RLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRY 871

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN-----HARKNNPIPQKSTGFDRRKK 411
              I + ++     +  +L +L    + +  A+                     F+  K+
Sbjct: 872 AGDIIRAMDLSGTLIPAELQALWTEYKALQEAEGKTVHTGGGFSGKGFKFDEQEFNAAKE 931

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQEN 438
           +   QK+ + L +S+    ++QDI + 
Sbjct: 932 SKKLQKAALGLADSDDEEDIEQDIDQQ 958


>gi|225579772|gb|ACN94054.1| unknown [Drosophila melanogaster]
          Length = 1224

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 137/447 (30%), Positives = 230/447 (51%), Gaps = 12/447 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 511 TWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 570

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +           +I+ PTREL  Q+  +  K+ K+  L    + GG     Q  +L
Sbjct: 571 HILDQPSMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAEL 630

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 631 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRP 690

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   L+ P  + V   S   + +E            K   L 
Sbjct: 691 DRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHV--VILNDDAKFFKLL 748

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +FK G +
Sbjct: 749 ELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKV 808

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  E  ++
Sbjct: 809 RLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRY 868

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN-----HARKNNPIPQKSTGFDRRKK 411
              I + ++     +  +L +L    + +  A+                     F+  K+
Sbjct: 869 AGDIIRAMDLSGTLIPAELQALWTEYKALQEAEGKTVHTGGGFSGKGFKFDEQEFNAAKE 928

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQEN 438
           +   QK+ + L +S+    ++QDI + 
Sbjct: 929 SKKLQKAALGLADSDDEEDIEQDIDQQ 955


>gi|225579763|gb|ACN94046.1| unknown [Drosophila melanogaster]
 gi|225579781|gb|ACN94062.1| unknown [Drosophila melanogaster]
 gi|225579826|gb|ACN94102.1| unknown [Drosophila melanogaster]
 gi|225579835|gb|ACN94110.1| unknown [Drosophila melanogaster]
 gi|225579853|gb|ACN94126.1| unknown [Drosophila melanogaster]
 gi|225579862|gb|ACN94134.1| unknown [Drosophila melanogaster]
 gi|225579889|gb|ACN94158.1| unknown [Drosophila melanogaster]
 gi|225579898|gb|ACN94166.1| unknown [Drosophila melanogaster]
 gi|225579916|gb|ACN94182.1| unknown [Drosophila melanogaster]
 gi|225579934|gb|ACN94198.1| unknown [Drosophila melanogaster]
 gi|225579952|gb|ACN94214.1| unknown [Drosophila melanogaster]
 gi|225579961|gb|ACN94222.1| unknown [Drosophila melanogaster]
          Length = 1224

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 137/447 (30%), Positives = 230/447 (51%), Gaps = 12/447 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 511 TWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 570

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +           +I+ PTREL  Q+  +  K+ K+  L    + GG     Q  +L
Sbjct: 571 HILDQPSMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAEL 630

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 631 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRP 690

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   L+ P  + V   S   + +E            K   L 
Sbjct: 691 DRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHV--VILNDDAKFFKLL 748

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +FK G +
Sbjct: 749 ELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKV 808

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  E  ++
Sbjct: 809 RLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRY 868

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN-----HARKNNPIPQKSTGFDRRKK 411
              I + ++     +  +L +L    + +  A+                     F+  K+
Sbjct: 869 AGDIIRAMDLSGTLIPAELQALWTEYKALQEAEGKTVHTGGGFSGKGFKFDEQEFNAAKE 928

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQEN 438
           +   QK+ + L +S+    ++QDI + 
Sbjct: 929 SKKLQKAALGLADSDDEEDIEQDIDQQ 955


>gi|224098856|ref|XP_002311293.1| predicted protein [Populus trichocarpa]
 gi|222851113|gb|EEE88660.1| predicted protein [Populus trichocarpa]
          Length = 496

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 141/419 (33%), Positives = 213/419 (50%), Gaps = 10/419 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGLS   +    + G   PT +Q   IP +L   DV G+AQTG+GKTA+F LP+L  
Sbjct: 64  FSDLGLSEWALQTCKELGMKNPTQVQSHCIPKILSGRDVLGLAQTGSGKTAAFALPILHR 123

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    V     L++ PTRELA Q+A+ F  +G   +L  A+++GG+    Q K L   
Sbjct: 124 LAEDPFGVFA---LVITPTRELAYQLAEQFRAFGSCLHLRCAVVVGGMDLLTQAKTLMGR 180

Query: 123 ADVLICTPGRILDH--FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             V+I TPGRI           + +  + LV+DEADR++D+GF   ++ +   +P +RQT
Sbjct: 181 PHVVIATPGRIKVLLENPDISPVFSRTKFLVLDEADRLIDVGFQEELRVVFKCLPKSRQT 240

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATMT ELQ + E         E      T +T+   ++       +   +      
Sbjct: 241 LLFSATMTSELQTLLELSENKAYFYEEYEGFKTVDTLNQQYIQMPKNVKEVYLVYILSKM 300

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  +++ IIF +       L   L++       ++    Q +R+  L  FK G   +++
Sbjct: 301 EEMGIRSAIIFVSACSTCRLLSSLLKELDHEPATLYSLESQSARLASLHRFKSGQASILI 360

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLDIP V  V N+D+P    +Y+HR+GRT RAGR G A +LVA+ D K + AI
Sbjct: 361 ATDLASRGLDIPTVDLVINYDLPRDPTDYVHRVGRTARAGREGLAVSLVAQHDGKLMKAI 420

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           E  + K+ +      + +       DI +   AR+   +     GFD   K    QK  
Sbjct: 421 EAEVGKQFEKFECKENEVLS-----DITKVYKARRVAKMKMMDDGFDELVKERKKQKQK 474


>gi|261409742|ref|YP_003245983.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|261286205|gb|ACX68176.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
          Length = 538

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 148/447 (33%), Positives = 241/447 (53%), Gaps = 20/447 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LG+  + V  + + G  +PTP+Q ++IPL+LQ  DV   A+TGTGKT +F+LP+L 
Sbjct: 13  NFQQLGIDEQRVRKLKEQGITEPTPVQQESIPLLLQGKDVIARAKTGTGKTLAFMLPILQ 72

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEK--YGKNYNLTVALLIGGIPFEAQNKKL 119
            ++    +   P+ LI+ PTRELA Q+ +  +K   G+   + +  + GG   E Q +KL
Sbjct: 73  HIDP---KRAYPQALIVAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVEKQLRKL 129

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G  ++I TPGR+LDH  RG L +  ++ LV+DEAD+ML MGF+  ++ +   +P+ RQ
Sbjct: 130 EGGRQLIIGTPGRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDEVEALIHALPYRRQ 189

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   +++++ N++  P  I +   S          V      SK+     + +
Sbjct: 190 TMLFSATMPAGVKQLAGNYMNQPVDIVIKGASPIPLEQIQQVVVECTDRSKQD--ALRAM 247

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      IIFC  K+    L  +L   G+    +HG++ Q  R  ++  F+E  +QL+
Sbjct: 248 IEEHNPFLAIIFCRTKRRATTLNEALLAHGYQSDELHGDLSQAKREAVMKRFREAKLQLL 307

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  V HVFN+D+P+  E+YIHRIGRTGRAG  G A T  A +D+  +  
Sbjct: 308 VATDVAARGLDVEGVTHVFNYDMPHDVESYIHRIGRTGRAGGSGMAITFAAGKDLNDLQR 367

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+ I +++  +  D             +     R+++    + TG  ++ +N SS +S 
Sbjct: 368 IEEGISQRLKRVRYD-------------SAAGSLRESSGGSGRDTGRPKKARNVSSLESD 414

Query: 420 IPLKESEKISKLQQDIQENDADSLGFR 446
               +    +        +  +  G  
Sbjct: 415 NERGQGRSRADRGTGSGRSRGNEQGRG 441


>gi|170099095|ref|XP_001880766.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644291|gb|EDR08541.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 498

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 139/387 (35%), Positives = 215/387 (55%), Gaps = 9/387 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  +G    ++ ++   G+  PTPIQ +  P+ L   DV  IAQTG+GKT SF LP +
Sbjct: 61  VSFDQVGFPEYLMSSIRAQGFDAPTPIQCQAWPMALTGRDVVAIAQTGSGKTISFALPAM 120

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +      A    P  L+L PTRELA Q+     K+G N  +    + GG P   Q + 
Sbjct: 121 LHINAQPLLAPGDGPIALVLAPTRELAVQIQQECTKFGSNSRIRNTAIYGGAPKGPQIRD 180

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RG +++I TPGR++D     K  +  +  LV+DEADRMLDMGF P I+ I S +   R
Sbjct: 181 LQRGVEIVIATPGRLIDMLETQKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDR 240

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT   ++QK++ +FL++  ++ + +   TA       V   + + K+  L++ L
Sbjct: 241 QTLMFSATWPKDVQKLANDFLRDMIQVNIGSMELTANHNIQQIVEVCSDFEKRNKLIKHL 300

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            Q        +IF   K+   ++   L + G+   AIHG+ +QR R  +L  FK G   +
Sbjct: 301 DQISAENAKVLIFVATKRVADDITKYLRQDGWPALAIHGDKEQRERDWVLGEFKAGRSPI 360

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLD+ DVG+V N+D PN  E+YIHRIGRTGRAG  G ++T    ++ K   
Sbjct: 361 LIATDVASRGLDVKDVGYVINYDFPNNCEDYIHRIGRTGRAGMKGISYTYFTTDNAKSAR 420

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKI 385
            +       +  L    +++ P LE++
Sbjct: 421 EL-------IGILREAKATVPPQLEEM 440


>gi|90578695|ref|ZP_01234505.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein [Vibrio
           angustum S14]
 gi|90439528|gb|EAS64709.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein [Vibrio
           angustum S14]
          Length = 427

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 161/432 (37%), Positives = 231/432 (53%), Gaps = 21/432 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L P ++ A+ + GY  PT +Q + IPL L+  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFQSLNLHPNLLKALTELGYSTPTDVQQQAIPLALKGDDVMAGAQTGTGKTAAFALPLL 60

Query: 61  TILE--------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
             L                        R LIL PTRELA QV D+   Y K   + VA+ 
Sbjct: 61  QRLMTLPSQAEQVSTAIENNHKSRNNIRALILTPTRELAQQVYDSITTYAKYTEIKVAVA 120

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q K L  GA++L+ TPGR+LDH   G + ++ +E  V+DEADRMLDMGFI  
Sbjct: 121 YGGTSMNVQVKALNAGAEILVATPGRLLDHVFNGSVSLSEVETFVLDEADRMLDMGFIVD 180

Query: 167 IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
           IQ I   +P  RQTL FSAT + +++K++ + L NPK +EV   ++ AET+E        
Sbjct: 181 IQRIMKRMPAERQTLFFSATFSKQVKKLAFDILTNPKMVEVTPANTAAETVEQMVYPVDK 240

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
               +       L      +  ++F   K+    L   L   G    +I+G+  Q +R +
Sbjct: 241 HRKAEL---LAYLIGSRNWRQVLVFTKTKQGSDQLAKDLGLDGIKASSINGDKSQGARQR 297

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L +FK G  +++VA+D+AARGLDI  + +V NFD+P +AE+Y+HRIGRTGRAG  G A 
Sbjct: 298 ALDDFKSGKTRVLVATDVAARGLDIEQLEYVVNFDMPFKAEDYVHRIGRTGRAGMTGHAI 357

Query: 347 TLVAKEDIKHIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           TL++ ++   + AIE+L++ ++   WL G      P L +        A +      KS 
Sbjct: 358 TLMSLDEEWALKAIEELLDSRLPQQWLEGYEPD--PALIETQSVHRGAAAEKRRAKSKSK 415

Query: 405 GFDRRKKNYSSQ 416
               R K+ + +
Sbjct: 416 IHQNRGKHRNRR 427


>gi|24642151|ref|NP_573020.2| CG6227 [Drosophila melanogaster]
 gi|7293060|gb|AAF48446.1| CG6227 [Drosophila melanogaster]
 gi|54650792|gb|AAV36975.1| LD41277p [Drosophila melanogaster]
 gi|220951960|gb|ACL88523.1| CG6227-PA [synthetic construct]
 gi|225579871|gb|ACN94142.1| unknown [Drosophila melanogaster]
 gi|225579880|gb|ACN94150.1| unknown [Drosophila melanogaster]
 gi|225579907|gb|ACN94174.1| unknown [Drosophila melanogaster]
 gi|225579925|gb|ACN94190.1| unknown [Drosophila melanogaster]
 gi|225579943|gb|ACN94206.1| unknown [Drosophila melanogaster]
 gi|225579970|gb|ACN94230.1| unknown [Drosophila melanogaster]
          Length = 1224

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 137/447 (30%), Positives = 230/447 (51%), Gaps = 12/447 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 511 TWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 570

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +           +I+ PTREL  Q+  +  K+ K+  L    + GG     Q  +L
Sbjct: 571 HILDQPSMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAEL 630

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 631 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRP 690

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   L+ P  + V   S   + +E            K   L 
Sbjct: 691 DRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHV--VILNDDAKFFKLL 748

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +FK G +
Sbjct: 749 ELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKV 808

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  E  ++
Sbjct: 809 RLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRY 868

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN-----HARKNNPIPQKSTGFDRRKK 411
              I + ++     +  +L +L    + +  A+                     F+  K+
Sbjct: 869 AGDIIRAMDLSGTLIPAELQALWTEYKALQEAEGKTVHTGGGFSGKGFKFDEQEFNAAKE 928

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQEN 438
           +   QK+ + L +S+    ++QDI + 
Sbjct: 929 SKKLQKAALGLADSDDEEDIEQDIDQQ 955


>gi|239615016|gb|EEQ92003.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis ER-3]
 gi|327357154|gb|EGE86011.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 548

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 131/381 (34%), Positives = 214/381 (56%), Gaps = 4/381 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ KPT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 131 TFDEAGFPQYVMSEVKAQGFAKPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 190

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 191 HINAQPLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQIRDL 250

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 251 TRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 310

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T ++SAT   ++++++++FL +  ++ + +   +A       V   +++ K+  + + L 
Sbjct: 311 TCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAKHLD 370

Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  +  KN   +IF   K+   ++   L + G+   +IHG+  Q  R  +L+ FK G   
Sbjct: 371 RIMEENKNAKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSP 430

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A TL   ++ K  
Sbjct: 431 IMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQA 490

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             +  ++ +    ++  L+ +
Sbjct: 491 RDLVSILTESKQQIDPRLAEM 511


>gi|226315242|ref|YP_002775138.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226098192|dbj|BAH46634.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 575

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 152/449 (33%), Positives = 230/449 (51%), Gaps = 13/449 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LG+  +++ A+   G  +PTPIQ K IP+VL+  DV   AQTGTGKT +FVLP+  
Sbjct: 6   DFLRLGIHKELIDALQANGITEPTPIQEKAIPVVLEGKDVIAQAQTGTGKTLAFVLPI-- 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            LE    +    + LIL PTRELA Q+    +K  +       L +  G     Q +KL+
Sbjct: 64  -LENADPQATHVQALILTPTRELALQITAEVKKLTEKLEDIQVLAVYGGQDVNQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGR+LDH  RG + ++ + + V+DEAD+ML MGF+P +++I +  PF +QT
Sbjct: 123 GKIHVVIATPGRLLDHLRRGTIDLSQVSMFVLDEADQMLHMGFLPEVEDIMANTPFEKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM++++Q +++ F+Q P+ I+V     T + I            +        L 
Sbjct: 183 LLFSATMSEQVQALAKRFMQKPENIKVQGKRITLDDI---RQIAVETTDRAKQATLCSLL 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      +IFC  K+    L   L+   +    +HG++ Q  R  ++  F+E  IQ +V
Sbjct: 240 DEQRPFLAVIFCRTKRRASKLNAELQGLDYMSDELHGDLSQAKREDVMKRFREARIQYLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   ++YIHRIGRTGRA   G AFTLV  +D   +  I
Sbjct: 300 ATDVAARGLDVEGVTHVFNYDIPEDVDSYIHRIGRTGRAKEKGTAFTLVTAKDWGQLREI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+ I   ++    D        E  D  +    R+      +      R K  S++    
Sbjct: 360 EQGINLSLERREMDRG------EPGDQKKQKPERERAEKADRQGDKQGRGKGKSAEGREQ 413

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNM 449
             +        +Q        + G R  +
Sbjct: 414 GSRGRRDGDGRRQAKGGGSERNSGKRERV 442


>gi|108800931|ref|YP_641128.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
 gi|119870071|ref|YP_940023.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           KMS]
 gi|126436556|ref|YP_001072247.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           JLS]
 gi|108771350|gb|ABG10072.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. MCS]
 gi|119696160|gb|ABL93233.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. KMS]
 gi|126236356|gb|ABN99756.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. JLS]
          Length = 557

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 150/425 (35%), Positives = 240/425 (56%), Gaps = 14/425 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL + P+V+ AV D GY  P+ IQ  TIP +L   DV G+AQTGTGKTA+F +P+L+
Sbjct: 14  TFADLQIHPEVLRAVTDVGYETPSAIQAATIPAMLAGSDVVGLAQTGTGKTAAFAIPILS 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++      +    L+L PTRELA QVA+ F +YG +  + V  + GG  +  Q   L+R
Sbjct: 74  KIDPNSRATQ---ALVLAPTRELALQVAEAFGRYGAHLPVNVLPVYGGSSYGPQMAGLKR 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  +G L +++++ +V+DEAD ML MGF   ++ I S  P  +Q  
Sbjct: 131 GAQVVVGTPGRVIDHLEKGSLDLSHLDYMVLDEADEMLQMGFAEDVERILSDTPEYKQVA 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K+++ +L +P  + V + + TAE I   ++                 + 
Sbjct: 191 LFSATMPPGIKKITKKYLHDPVEVTVKSKTQTAENITQRYIQVSYPRKMDALTRLLETEQ 250

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   +      + V     +   +GF+  AI+G+I Q  R + +S  K+G+I ++VA
Sbjct: 251 GDGMIVFVRTKQATEEVAEKLRA---RGFAAAAINGDIPQAVRERTISQLKDGSIDILVA 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV NFD+P+  E+Y+HRIGRTGRAGR G A   V   +   +++IE
Sbjct: 308 TDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLNSIE 367

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD--RRKKNYSSQKSH 419
           ++  +K+  +        P +E ++  +    R +      + G D  RR      + ++
Sbjct: 368 RVTRQKLVEIQ------LPSVEDVNAQRVEKFRDSIGEALNAPGIDLFRRLIEDYERDNN 421

Query: 420 IPLKE 424
           +PL +
Sbjct: 422 VPLAD 426


>gi|49477717|ref|YP_036595.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118477863|ref|YP_895014.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|196033783|ref|ZP_03101194.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196043209|ref|ZP_03110447.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|225864437|ref|YP_002749815.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|228927528|ref|ZP_04090581.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228946079|ref|ZP_04108415.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229122021|ref|ZP_04251237.1| ATP-dependent RNA helicase [Bacillus cereus 95/8201]
 gi|49329273|gb|AAT59919.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118417088|gb|ABK85507.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis str. Al Hakam]
 gi|195993463|gb|EDX57420.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196025518|gb|EDX64187.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|225786741|gb|ACO26958.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|228661364|gb|EEL16988.1| ATP-dependent RNA helicase [Bacillus cereus 95/8201]
 gi|228813592|gb|EEM59877.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228832136|gb|EEM77720.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 450

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 146/440 (33%), Positives = 238/440 (54%), Gaps = 12/440 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EK +   +     +     P ++++D       +       +    D R+ + S  K   
Sbjct: 360 EKTLGAPIQREIIE----QPKIKRVDENGKPLPKPAPKKSGEYRQRDSREGSRSGSKGRT 415

Query: 421 PLKESEKISKLQQDIQENDA 440
              +S   S+ + +   N  
Sbjct: 416 -RNDSRNSSRNENNRSFNKP 434


>gi|224285398|gb|ACN40422.1| unknown [Picea sitchensis]
          Length = 428

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 130/389 (33%), Positives = 200/389 (51%), Gaps = 8/389 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    Q  DV   AQ+GTGKTA+F   +L 
Sbjct: 39  TFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCQGLDVIQQAQSGTGKTATFCSGILQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L      V   + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 99  QLNYN---VPECQALVLAPTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLRILQA 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 156 GVHVVVGTPGRVYDMLRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPTNLQVG 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+ NP RI V     T E I+  +V    +  K   L       
Sbjct: 216 VFSATMPPEALEITRKFMTNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDL--YE 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 274 TLAITQSVIFINTRRKVDWLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V K+D + +  I+
Sbjct: 334 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLQDIQ 393

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           +     ++ L  +++  N    KI   QH
Sbjct: 394 RFYNVVIEELPNNVADFNI---KILQKQH 419


>gi|328675823|gb|AEB28498.1| Cold-shock DEAD-box protein A [Francisella cf. novicida 3523]
          Length = 570

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 138/371 (37%), Positives = 220/371 (59%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGLS  +V  V++ GY  PTPIQ   IP +L   DV G AQTGTGKTA+F LP++ 
Sbjct: 8   DFSQLGLSQDIVDTVINLGYETPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++  R+R + P+ L+L PTRELA QVA+ F+ + KN        I  G  + +Q + L+
Sbjct: 68  NIDL-RSRDKSPQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQIRALK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ T GR++DH  +G L ++N+  LV+DEAD ML MGFI  ++ + S +    Q 
Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRFVLSHISEQCQR 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++  + E +L+NP +I+V   + TA T+   F+                ++
Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLEIE 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +   IIF   K + + +  +L+  G+ V AI+G++ Q  R  I+  F+     ++V
Sbjct: 247 ETDGV---IIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRNAKSDILV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+  + HV N+D+PN  + Y+HRIGRTGRAGR G + +LV  ++++ +  +
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363

Query: 361 EKLIEKKVDWL 371
           E+     +  +
Sbjct: 364 ERFTGSPMQEV 374


>gi|325003093|ref|ZP_08124205.1| DEAD/DEAH box helicase domain protein [Pseudonocardia sp. P1]
          Length = 471

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 149/367 (40%), Positives = 207/367 (56%), Gaps = 3/367 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+P ++ A+   GY  P+PIQ   I  ++   D+ G A TGTGKTA+F LPML 
Sbjct: 35  TFADLGLAPTLLAALDGLGYETPSPIQAAAIGPLIAGRDLLGQAATGTGKTAAFALPMLQ 94

Query: 62  ILEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L  GR    R   P  ++L PTRELA QV +   KYG      VA + GG P   Q  +
Sbjct: 95  RLADGRVSRDRGPKPFGIVLAPTRELAMQVGEAVTKYGAELGARVACVFGGAPIGPQLGQ 154

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG DV++ TPGR +D  NRG L ++ IE+ V+DEAD MLDMGF+  I+ I    P  R
Sbjct: 155 LRRGVDVVVATPGRAIDLINRGALSLDAIEVAVLDEADEMLDMGFVEDIETILGSTPEGR 214

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATM   +Q ++   L +P  I +   ++            Y        +    
Sbjct: 215 QTVLFSATMPGRIQSLARTHLSDPADIRIKREATPEGEAPKVRQTAYHVPRSHVTVALGR 274

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   +     I+FC  + +V  +  +L  +G    A+HG +DQ  R +++   + G  +L
Sbjct: 275 VLEMEQPTAAIVFCRTRADVDAVTETLTARGLRAEALHGGMDQEHRTRVVERLRAGRTEL 334

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV N DVP+  E+Y+HRIGR GRAGR G A TLV    ++H+ 
Sbjct: 335 LVATDVAARGLDIDSLTHVVNHDVPSSPESYVHRIGRVGRAGREGVAITLVTPGSVRHLR 394

Query: 359 AIEKLIE 365
            IE+LI 
Sbjct: 395 NIERLIG 401


>gi|303242080|ref|ZP_07328571.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302590374|gb|EFL60131.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 499

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 154/441 (34%), Positives = 240/441 (54%), Gaps = 11/441 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+SP ++ A+ + G+  PT +Q K IP +L   D+  +++TG+GKTA F + ML 
Sbjct: 4   SFNDLGISPPILKALEEMGFEAPTEVQSKAIPHILNHEDLIVMSKTGSGKTAVFGVSMLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    +   P+ LIL PTRELA QV +  +K  K+ +     + G      + + L R
Sbjct: 64  MIDP---KADGPQGLILTPTRELAVQVDNELKKMAKHLDHHTTAVYGQHSMNVEIQALRR 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR  DH + G L+  NI  L++DEADRMLDMGF+  +  I   +P  R TL
Sbjct: 121 GISIVTGTPGRAYDHIHTGNLITKNIRFLILDEADRMLDMGFLDQVVKIIRTLPKDRVTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  E++++ + +++ P  IE+ + + T +TIE  +     Q              
Sbjct: 181 LFSATIPPEIRRICKEYMKQPLTIEIKSQTKTVDTIEQIYYRIDNQQKNTELNHLL---L 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  ++ +IFCN K  V  +   L ++G++  ++HG+I Q  RMK +  FK+G   L+VA
Sbjct: 238 IERPESCMIFCNTKIAVDKVQSFLSRKGYACQSLHGDIPQARRMKTIQQFKQGDFHLLVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ I ++  V N+DVP   +NY+HRIGRTGRAG  G+A TLV  EDI  + AIE
Sbjct: 298 TDVAARGIHIDNLSLVINYDVPLEKDNYVHRIGRTGRAGNGGRALTLVTSEDIMSLYAIE 357

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP--IPQKSTGFDRRKKNYSSQKSH 419
           + I   +    G+L +          A    AR N+    P ++      K   + Q  +
Sbjct: 358 EHIGAMITE--GELPT-QEMYNAQKAAADKWARANSLQHRPTRTDSGSNSKATPTKQSYN 414

Query: 420 IPLKESEKISKLQQDIQENDA 440
            P +   K +    +I  N A
Sbjct: 415 KPPQHHNKPNGKATEINTNKA 435


>gi|238918430|ref|YP_002931944.1| ATP-dependent RNA helicase DeaD [Edwardsiella ictaluri 93-146]
 gi|238867999|gb|ACR67710.1| cold-shock deAd box protein a [Edwardsiella ictaluri 93-146]
          Length = 634

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 134/378 (35%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+  ++ A+ D GY KP+PIQ   IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLAAPIIEALNDLGYEKPSPIQAACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     ++ P+ L+L PTRELA QVA+    + K+ +    + +  G  ++ Q + L 
Sbjct: 67  NIDPS---LKAPQVLVLAPTRELAVQVAEAMADFSKHMHGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L + ++  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLSLTSLRGLVLDEADEMLRMGFIEDVETIMAQIPAEHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F+  P+ + + +  +T   I   +   Y     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVYGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G+S  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|127511273|ref|YP_001092470.1| ATP-dependent RNA helicase RhlB [Shewanella loihica PV-4]
 gi|189040043|sp|A3Q9R3|RHLB_SHELP RecName: Full=ATP-dependent RNA helicase rhlB
 gi|126636568|gb|ABO22211.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 435

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 138/423 (32%), Positives = 225/423 (53%), Gaps = 17/423 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  L P++  A++++G+   TPIQ  ++P++L+  D+ G AQTGTGKT +F++    
Sbjct: 10  KFADFSLHPEIQQALVESGFEYCTPIQALSLPILLEHKDIAGQAQTGTGKTLAFLVATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      ++  PR +++ PTRELA Q+A + E   K+  L V ++ GG  +E Q K
Sbjct: 70  HLLTTPIPDGRQLNQPRAIVMAPTRELAIQIAKDGELLAKHTGLKVGIVYGGESYEVQRK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+LI T GRI+D+  +G + ++ I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLDKGVDILIGTTGRIIDYVRQGVINLSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T  ++     +       +V    S   +        Y     K   L  
Sbjct: 190 NERLNMLFSATLSMKVQELAYDHMNDPEKVEIAPSEKTSKNITEEIFYPSMEDK-MRLLL 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +D  +  I+F N K +  NL   LE  G  V  + G++ Q+ R++IL  F +G + 
Sbjct: 249 TLIEEDWPEKAIVFSNTKHSCENLWAHLEGDGHRVGLLTGDVPQKKRIRILEQFTKGELD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG+ G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE  I+  +   N D    L  + PP+           RK++P P   +G  + +   
Sbjct: 369 PAIEHYIQHSIPVTNYDSEALLDDIPPPV--------RIHRKHSPRPTGRSGGGKPQGGR 420

Query: 414 SSQ 416
              
Sbjct: 421 PGA 423


>gi|229918086|ref|YP_002886732.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
 gi|229469515|gb|ACQ71287.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
          Length = 509

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 145/369 (39%), Positives = 222/369 (60%), Gaps = 6/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL LS  +V  V   G+ + TPIQ +TIP+ L   DV G AQTGTGKTA+F +P + 
Sbjct: 3   KFQDLQLSEALVKGVHKMGFEEATPIQAETIPVALTGVDVLGQAQTGTGKTAAFGIPTIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    + R  + L+L PTRELA QVA+   K G+   +    + GG   + Q + L++
Sbjct: 63  RIDS---KARQVQALVLAPTRELAIQVAEELNKIGETKRVYALPVYGGQQIDRQIRGLKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++DH  R  + +++I+ +++DEAD ML+MGF+  I+ I + +P  RQTL
Sbjct: 120 NPQIVVATPGRLMDHMKRKTIKLDDIQTVILDEADEMLNMGFVEDIETILAGLPEERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  +++K++E F+++P  I+V     T E I   F+                   
Sbjct: 180 LFSATMPPQIKKIAERFMKSPTIIKVKAKEMTVENINQQFLELREGQKFDTLCRL---ID 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D+ +  IIF   KK V  +  +L K+G++   +HG++ Q  R +++  FK GTI ++VA
Sbjct: 237 IDSPELSIIFARTKKRVDEVTEALIKRGYTADGLHGDLTQSKRDQVIRRFKNGTIDILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFDVP   E+Y+HRIGRTGRAG+ G A T +   +   + AIE
Sbjct: 297 TDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGTALTFITPREFGQVKAIE 356

Query: 362 KLIEKKVDW 370
           ++  KK++ 
Sbjct: 357 RVTNKKMNR 365


>gi|182412765|ref|YP_001817831.1| DEAD/DEAH box helicase domain-containing protein [Opitutus terrae
           PB90-1]
 gi|177839979|gb|ACB74231.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
          Length = 409

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 157/371 (42%), Positives = 226/371 (60%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L LS  V+  V+ AGY  PTPIQ++ IP+VL   D+ G AQTGTGKTA+F LP+ 
Sbjct: 1   MPFKALQLSAPVLRGVVAAGYTDPTPIQLRAIPVVLGGGDLIGSAQTGTGKTAAFALPI- 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +   G    R PR L+LEPTRELAAQV   F  + +  +L    + GG+ +  Q  +L+
Sbjct: 60  -LTRLGAHAARAPRVLVLEPTRELAAQVETAFRDFARFTDLRTVAVFGGVGYGLQRTELK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR++D+ +   + +  +EILV+DE DRMLDMGF+P +++I    P  RQT
Sbjct: 119 RGVDVIVATPGRLMDYLHDRTINLQGVEILVLDEVDRMLDMGFLPVVKDIIQRCPRQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+  E+Q V+   L+NP R+EV    S  E+++H   A Y   + +   L + L 
Sbjct: 179 LFFSATVPPEIQAVASFALRNPTRVEVGVNRSVNESVKH---ALYPVAADQKFELLEALL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + ++F   K     +   L+    SV  +H N  Q  R++ L+ FK G  ++MV
Sbjct: 236 ARTDFDSVLVFSRTKHGADKIARKLKAANHSVAVLHANRSQNQRIEALAGFKSGKYEIMV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV N+DVP + E+Y+HRIGRTGRA   G AFTLV  E+   +  I
Sbjct: 296 ATDIAARGIDVAGVSHVINYDVPEKPEDYVHRIGRTGRAQAVGDAFTLVTPENAHDVRDI 355

Query: 361 EKLIEKKVDWL 371
           E+ I +K+  L
Sbjct: 356 ERFIGQKIPEL 366


>gi|254457027|ref|ZP_05070455.1| dead/deah box helicase [Campylobacterales bacterium GD 1]
 gi|207085819|gb|EDZ63103.1| dead/deah box helicase [Campylobacterales bacterium GD 1]
          Length = 431

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 155/418 (37%), Positives = 235/418 (56%), Gaps = 9/418 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGL   ++ A+ + GY  PT IQ + IPLVL + D+   AQTGTGKTA+F LP+ 
Sbjct: 1   MSFEKLGLIKPLLGAIKELGYEHPTLIQKRAIPLVLAKSDIFATAQTGTGKTAAFALPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +        R  R +IL PTREL+ Q+ ++ + Y K+ +LT A+L+GG   EAQ + L
Sbjct: 61  QKLRNTTADENRTIRAVILSPTRELSIQIHEDVKNYSKHMSLTSAILVGGKDIEAQQRML 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D++I TPGR ++  ++G  + N     V+DEADRMLDMGF   I+ I   +P   Q
Sbjct: 121 KTGIDIVIGTPGRFMELMDKGLDITNIEVF-VVDEADRMLDMGFSKEIRRIHLQLPRRHQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT +D+++K+S+  L  P  IE    ++T +TI             +       L
Sbjct: 180 TLLFSATYSDKVRKLSKQILTKPAFIETAKKNTTVDTINQVAYMVDTDRKAEL---LAYL 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++F   K +   L   L+K G     IHG+  Q +R K L+ FKEG I+++
Sbjct: 237 IGSRNFPQVLVFTKTKVSADALFIELKKDGLKCGIIHGDKTQANRQKTLTQFKEGQIRVL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI ++ +V N+++P+  E+Y+HR+GRTGRAGR G+A +L+   D  +I  
Sbjct: 297 VATDIASRGLDIEELPYVINYELPSIPEDYVHRVGRTGRAGRDGQAISLLDVYDKYNIKD 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDI----AQHNHARKNNPIPQKSTGFDRRKKNY 413
           +E+LI +K+     +    +P + + D      +  H R  N  P K +     KK +
Sbjct: 357 VERLIGQKIPQEVVEGFEPDPTIRRKDEDEVKLKSEHKRVENKRPTKKSEKIPAKKPF 414


>gi|328865226|gb|EGG13612.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 414

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 122/376 (32%), Positives = 188/376 (50%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DL L   ++  + + GYVKP+PIQ K IP+ L   D+   A+ GTGKTASF++P L 
Sbjct: 41  EFDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGKDIMARAKNGTGKTASFLIPALE 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             +         + LIL PTRELA Q +   ++ GK  N+ V    GG   +    +L  
Sbjct: 101 KTDPT---KDYIQVLILVPTRELALQTSQVCKELGKYMNVKVMATTGGTSLKDDIMRLYE 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD   +    ++N   +++DEAD++L   F P I+ + + +P  RQ L
Sbjct: 158 TVHILVATPGRVLDLAQKNVANLSNTHTIIMDEADKLLSQDFQPLIEQLINFLPPQRQIL 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F  N  +           T++           ++       L S
Sbjct: 218 LFSATFPLTVKT----FKDNYLQKAYEINLMEELTLKGVTQYYAFVDERQKIHCLNTLFS 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 274 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQAHRNRVFHDFRNGHCRNLVS 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI DV  V NFD P  +E Y+HRIGR+GR G  G A  L+  ED   +  IE
Sbjct: 334 SDLFTRGIDIQDVNVVINFDFPKHSETYLHRIGRSGRFGHLGLAINLITYEDRFSLHKIE 393

Query: 362 KLIEKKVDWLNGDLSS 377
           + +  ++  +   +  
Sbjct: 394 QELGTEIKPIPPVIDK 409


>gi|269964515|ref|ZP_06178755.1| Superfamily II DNA and RNA helicase [Vibrio alginolyticus 40B]
 gi|269830752|gb|EEZ84971.1| Superfamily II DNA and RNA helicase [Vibrio alginolyticus 40B]
          Length = 403

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 126/371 (33%), Positives = 199/371 (53%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L L   ++ A+ + GY +PT IQ + IP  L   D+   A TGTGKTA+FVLP L 
Sbjct: 4   TFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    R   P  + IL PTRELA Q+AD      KN  L +  + GG+ ++     L 
Sbjct: 64  YLQDFPRRKPGPARILILTPTRELAMQIADQARALAKNTKLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+ ++ +  +     IE L++DEADRMLDMGF P +  +++   + +QT
Sbjct: 124 TTQDIVVATPGRLKEYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     ++  + + L +P  I+  +P    + I   +        K         
Sbjct: 184 LLFSATLEGKGVEGFTADLLNDPAEIDAKSPLRERKKIAQWYHRADDAEHKLE---LLKH 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  I+F   ++ +  L   LE        I G + Q  R   +S F++GT+ ++
Sbjct: 241 IITQQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFRDGTVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A ++V   D   +D 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR 360

Query: 360 IEKLIEKKVDW 370
           + + +++ +  
Sbjct: 361 VARYVKEDIKE 371


>gi|251791029|ref|YP_003005750.1| ATP-dependent RNA helicase DeaD [Dickeya zeae Ech1591]
 gi|247539650|gb|ACT08271.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
          Length = 624

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 134/378 (35%), Positives = 225/378 (59%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLS  ++ A+ + GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   SFASLGLSAPILNALSEMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     ++ P+ L+L PTRELA QVA+   ++ K+      + +  G  ++ Q + L 
Sbjct: 67  NIKA---DLKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + +P   QT
Sbjct: 124 QGPQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F+ +P+ + + +  +T   I   +   Y     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEA---LIRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  ++   + L
Sbjct: 361 ERTMKLTIPEVDLPNAEL 378


>gi|220929887|ref|YP_002506796.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
 gi|220000215|gb|ACL76816.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
           H10]
          Length = 565

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 140/385 (36%), Positives = 224/385 (58%), Gaps = 9/385 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL LS +V  A++D G+ + TPIQ ++IP +L+ +D+ G AQTGTGKT +F +P +
Sbjct: 4   LSFKDLTLSDEVQRAIVDMGFEEATPIQSQSIPYILEGNDLIGQAQTGTGKTCAFGIPAV 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++    ++   + L+L PTRELA Q  +      K  +    L +  G P + Q   L
Sbjct: 64  EKIDP---QIDSIQVLVLSPTRELAIQSCEELRNVLKYKDGIRILPVYGGQPIDRQIMAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   ++I TPGR++DH  R  + + +++++V+DEAD ML+MGF   I  I   VP  RQ
Sbjct: 121 KKRPQIIIGTPGRVMDHMRRRTIKLESLKMIVLDEADEMLNMGFREDIDTILEKVPEDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  E+ ++++ + +NP  I     +    T+                 +   L
Sbjct: 181 TILFSATMPKEILELTKKYQKNPVHI---KIAHKELTVPSIEQYYLEVKESAKLEVLSRL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              + +K  ++FCN KK V  L  SL+ +GFS  A+HG++ Q  R K+++ F++G   ++
Sbjct: 238 IDTNDIKLSLVFCNTKKRVDELTASLQSRGFSAEALHGDMRQEHRDKVMNLFRKGNFDIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+ DV  VFN+D+PN  E Y+HRIGRTGRAGR GKAFT +   ++  +  
Sbjct: 298 IATDVAARGIDVDDVEAVFNYDLPNDDEYYVHRIGRTGRAGRTGKAFTFIYGREMYKLRD 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           I++  +  +  +     SLN   EK
Sbjct: 358 IQRYTKSTI--IPMKPPSLNEVEEK 380


>gi|91226790|ref|ZP_01261443.1| ATP-dependent RNA helicase SrmB [Vibrio alginolyticus 12G01]
 gi|91188921|gb|EAS75205.1| ATP-dependent RNA helicase SrmB [Vibrio alginolyticus 12G01]
          Length = 407

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 126/371 (33%), Positives = 199/371 (53%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L L   ++ A+ + GY +PT IQ + IP  L   D+   A TGTGKTA+FVLP L 
Sbjct: 4   TFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    R   P  + IL PTRELA Q+AD      KN  L +  + GG+ ++     L 
Sbjct: 64  YLQDFPRRKPGPARILILTPTRELAMQIADQARALAKNTKLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+ ++ +  +     IE L++DEADRMLDMGF P +  +++   + +QT
Sbjct: 124 TTQDIVVATPGRLKEYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     ++  + + L +P  I+  +P    + I   +        K         
Sbjct: 184 LLFSATLEGKGVEGFTADLLNDPAEIDAKSPLRERKKIAQWYHRADDAEHKLE---LLKH 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  I+F   ++ +  L   LE        I G + Q  R   +S F++GT+ ++
Sbjct: 241 IITQQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFRDGTVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A ++V   D   +D 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR 360

Query: 360 IEKLIEKKVDW 370
           + + +++ +  
Sbjct: 361 VARYVKEDIKE 371


>gi|289668227|ref|ZP_06489302.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 640

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 143/371 (38%), Positives = 221/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV + GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 11  FADLGLSGAVMKAVANVGYESPSPIQAATIPALLSGRDVLGQAQTGTGKTAAFALPVLSN 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
            +  + +   P+ L+L PTRELA QVA+ F+KY +       L +  G P+  Q   L+R
Sbjct: 71  ADLNQLK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   + ++++ +L++P  + +   ++T+  I   +      +          ++ 
Sbjct: 188 LFSATMPPAICRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEP 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   IIF   K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++VA
Sbjct: 248 FDGM---IIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HV N+D+P   E+Y+HRIGRTGRAGR+G A   V   +   + +IE
Sbjct: 305 TDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIE 364

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 365 RATRQPIEEMQ 375


>gi|153824344|ref|ZP_01977011.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           MZO-2]
 gi|254226198|ref|ZP_04919793.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V51]
 gi|125621300|gb|EAZ49639.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V51]
 gi|149741898|gb|EDM55927.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           MZO-2]
          Length = 422

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 148/409 (36%), Positives = 231/409 (56%), Gaps = 11/409 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGL  +++  + + G V PTPIQ + IP VLQ  DV   AQTGTGKTA+F LP++
Sbjct: 6   ITFSQLGLDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65

Query: 61  TILEKGRARVRMPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               +   +       I      PTRELA QV D+ + Y K   L +  + GG   + Q 
Sbjct: 66  QRFIEQPWQRETNSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G D+LI TPGR+LDH +   L +  +E+LV+DEADRMLDMGF+P +Q +   +  
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSAT   +++ V+   +++P  ++V   +STAET+       Y    K+   L 
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETV---QQMVYPVDKKRKRELL 242

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L      +  ++F   ++    L   L+  G    +I+G+  Q +R K L +FK G +
Sbjct: 243 SYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L++ ++   
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQ 362

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           ++AIE+L+  ++  +WL G   S  P + + +  + +  R +     K+
Sbjct: 363 LEAIERLLNTRLPQEWLKGFEPS--PVVHEENSPRRSAGRSSEKRKLKA 409


>gi|237730082|ref|ZP_04560563.1| ATP-dependent RNA helicase DeaD [Citrobacter sp. 30_2]
 gi|226908688|gb|EEH94606.1| ATP-dependent RNA helicase DeaD [Citrobacter sp. 30_2]
          Length = 642

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 133/378 (35%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G+S  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQSLREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNADL 378


>gi|225432126|ref|XP_002274485.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1864

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 144/379 (37%), Positives = 224/379 (59%), Gaps = 2/379 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G  P+++  +  AG+  PTPIQ +T P+ LQ  D+  IA+TG+GKT  +++P  
Sbjct: 498 MTFEATGFPPEILREIYSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAF 557

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L + R  V+  P  ++L PTRELA Q+ D   K+G++  ++ A L GG    AQ K+L
Sbjct: 558 ILLRRRRNNVQNGPTVMVLAPTRELATQIQDETIKFGRSSRVSCACLYGGTSRNAQLKEL 617

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGADV++ TPGR+ D     K+ +  I +LV+DEADRMLDMGF P I+ I + +P  RQ
Sbjct: 618 DRGADVVVATPGRLNDILESKKIDLGQISLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQ 677

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+++AT   E++K++ + L NP ++ + +    A               +K   L+Q+L
Sbjct: 678 TLMYTATWPKEVRKIAGDLLVNPVQVNIGSVDELAANKAITQYVEVVSPPEKQRRLEQIL 737

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +SQ+     IIFC+ KK    L  S   + F    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 738 RSQERGSKVIIFCSTKKLCDQLARS-IGRNFGAAVIHGDKSQVERDWVLNQFRSGKSPIL 796

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G ++T  +++D K+   
Sbjct: 797 VATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDCKYAAD 856

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E     +  ++  +
Sbjct: 857 LIKVLEGANQRVPPEVRDM 875


>gi|54308937|ref|YP_129957.1| ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46913367|emb|CAG20155.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Photobacterium
           profundum SS9]
          Length = 422

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 166/427 (38%), Positives = 243/427 (56%), Gaps = 16/427 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+ ++V  V + G+  PTPIQ + IP VL   D+   AQTGTGKTA+F LPM+
Sbjct: 1   MSFQALGLNTQLVDTVTELGFKTPTPIQEQAIPQVLAGDDIMAGAQTGTGKTAAFGLPMI 60

Query: 61  T---------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
                       E    +    R L+L PTRELA QV D+   Y KN ++ VA+  GG  
Sbjct: 61  QRLLASQQSEHDEGYIKKPEAIRALVLTPTRELAQQVHDSILAYSKNTSIKVAVAYGGTS 120

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q K L+ G D+LI TPGR+LDH   G + ++ IE LV+DEADRMLDMGF+  I+ I 
Sbjct: 121 MGVQVKALKSGVDILIATPGRLLDHAFTGTVDLSKIECLVLDEADRMLDMGFVVDIKRIM 180

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
             +P  RQTLLFSAT +++++K++ + L +PK IEV   + TAE++            ++
Sbjct: 181 QRMPRKRQTLLFSATFSNQVKKLAYDILADPKLIEVTPENITAESVTQMVYPVDKHRKRE 240

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                            +IF   K+    L   L   G    +I+G+  Q +R + LS+F
Sbjct: 241 LLSYL---IGSRNWNQVLIFTKTKQGSDELAKELILDGIKAVSINGDKSQGARQRALSDF 297

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           KEG ++ MVA+D+AARGLDI  +G+V NFD+P +AE+Y+HRIGRTGRAG  G A +L++ 
Sbjct: 298 KEGKVRAMVATDVAARGLDIEQLGYVVNFDLPFQAEDYVHRIGRTGRAGLTGSAISLMSI 357

Query: 352 EDIKHIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           ++   + AIE+L++ ++  +WL G      P ++  D  + +   +   I  KS     R
Sbjct: 358 DEEWALRAIEELLDTRLPQEWLEGYEPD--PTIKAQDNRRSSSTSEKRRIKAKSKIHKNR 415

Query: 410 KKNYSSQ 416
            +N + +
Sbjct: 416 GRNQTKR 422


>gi|299535847|ref|ZP_07049168.1| ATP-dependent RNA helicase yqfR [Lysinibacillus fusiformis ZC1]
 gi|298729047|gb|EFI69601.1| ATP-dependent RNA helicase yqfR [Lysinibacillus fusiformis ZC1]
          Length = 433

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 134/437 (30%), Positives = 213/437 (48%), Gaps = 10/437 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M  + D    P +  A+ + G+ +PTPIQ + IPL+L+     G A TGTGKT SF++P+
Sbjct: 1   MSKYTDYNFQPFLQDAIANLGFTEPTPIQKEIIPLLLKGKSAIGQAHTGTGKTHSFLIPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  ++  +  V+     I  PTRELA Q+ D   +  +   +   L IGG   +    KL
Sbjct: 61  VQRIDVEKQEVQAV---ITSPTRELAQQIFDALNQLIEGTAIQAKLFIGGTDKQRSIDKL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +++ TPGRI D  +   L ++   ILV+DEAD   DMGFI  I    S +P   +
Sbjct: 118 KTQPQIVVGTPGRIRDLVSAQALFVHTAPILVVDEADLAFDMGFIEEIDGFASQMPEKLE 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +FSAT+ ++LQ   + +++ P  + +N     AE I           SK        +
Sbjct: 178 MYVFSATIPEKLQPFLKKYMEAPVHVHMNDKRPVAEGI---DFVLVPVRSKSRNKRLLEV 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    +IF N +K   ++   L + G     IHG++  R R K++   ++   Q +
Sbjct: 235 IEGINPFLAVIFTNTRKTAEHVAGYLNEHGIRCGQIHGDLSPRDRKKMMKQIRDLDYQYI 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+DI  + HV N+++P   E +IHR+GRT RAG  G A TL    D   +  
Sbjct: 295 VATDLAARGIDIQGISHVINYEIPEDLEFFIHRVGRTARAGNKGTAITLFEPSDEDAVVR 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +EK+    + ++  D+        K   A+ N  ++ N I  K+    R+ K        
Sbjct: 355 VEKM---GIPFVQKDVKDGEWSELKERHARKNRVKQENEIDVKAKSLVRKPKKVKPGYKR 411

Query: 420 IPLKESEKISKLQQDIQ 436
               E EKI K ++ ++
Sbjct: 412 NMKWEMEKIKKRERRLK 428


>gi|218903612|ref|YP_002451446.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|218537452|gb|ACK89850.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
          Length = 450

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 146/440 (33%), Positives = 237/440 (53%), Gaps = 12/440 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T  TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EK +   +     +     P ++++D       +       +    D R+ + S  K   
Sbjct: 360 EKTLGAPIQREIIE----QPKIKRVDENGKPLPKPAPKKSGEYRQRDSREGSRSGSKGRT 415

Query: 421 PLKESEKISKLQQDIQENDA 440
              +S   S+ + +   N  
Sbjct: 416 -RNDSRNSSRNENNRSFNKP 434


>gi|218768426|ref|YP_002342938.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
 gi|121052434|emb|CAM08770.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
          Length = 457

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 159/447 (35%), Positives = 250/447 (55%), Gaps = 29/447 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV    +T   +E   +A      +      +
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQDTTNANVEQHIIAVDTIQKRNL---LE 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G ++
Sbjct: 242 RLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           ++I++L   K+             +E+I+  +     +    P+K    + R++N     
Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRY--- 406

Query: 418 SHIPLKESEKISKLQQDIQENDADSLG 444
                 ES K  + +    EN A+  G
Sbjct: 407 ------ESAKAQREKNTRPENAANDAG 427


>gi|89096443|ref|ZP_01169336.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
 gi|89089297|gb|EAR68405.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
          Length = 543

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 144/451 (31%), Positives = 237/451 (52%), Gaps = 17/451 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F  LG+S  ++  +   G  +PT +Q K IP+VL+  D+   AQTGTGKT +F+LP+L
Sbjct: 22  LNFKHLGISDPLIHKLAAQGIDEPTAVQEKAIPIVLEGRDIIAQAQTGTGKTLAFILPIL 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++      +    LI+ PTRELA Q+    +K  ++      L +  G   E Q  KL
Sbjct: 82  EKIDPSNGSTQ---ALIVTPTRELALQITSEVKKLIEDMPDLNVLAVYGGQDVEKQLHKL 138

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +R   +++ TPGR+LDH  RG + ++ +  LV+DEAD+ML +GF+  ++ I S  P +RQ
Sbjct: 139 QRQTQIVVATPGRLLDHLRRGTVQLDEVSFLVLDEADQMLHIGFLNEMELIISQTPASRQ 198

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM D+++K+S+  L+ P+ I +       + I            +         
Sbjct: 199 TMLFSATMPDDIRKLSKKHLKEPESIRIEKTFVPEKAI---EQLAIFTTDRAKQNALISR 255

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +D     IIFC   +    L  +L+ Q FS   +HG++ Q  R K++  F+   IQ +
Sbjct: 256 IREDRPFLAIIFCRTIRRATKLYDALKSQRFSCEELHGDLTQAKREKVMKKFRNAEIQFL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  V HV+N+D+P  +E+Y+HRIGRTGRAG+ G A T  A++D   + A
Sbjct: 316 IATDVAARGLDVEGVTHVYNYDIPQDSESYVHRIGRTGRAGKDGLAVTFYAEKDEAALKA 375

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+ +  +   L  + S+        +         +   P+  +  DRR     S++  
Sbjct: 376 IEQELNIR---LPKEESTATA-----NTTADGEKSSSGDKPKNRSDRDRRAGGAESRRRT 427

Query: 420 IPLKESEKISKLQ--QDIQENDADSLGFRGN 448
               E     +++  +  +  +  S G R +
Sbjct: 428 GGRTEGRGSREVRSTRSGERRNRSSEGRRAD 458


>gi|161506153|ref|YP_001573265.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867500|gb|ABX24123.1| hypothetical protein SARI_04344 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 649

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 24  TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLN 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 84  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 140

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 141 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 200

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 201 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 258 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 318 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 377

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 378 ERTMKLTIPEVELPNAEL 395


>gi|293393148|ref|ZP_06637463.1| ATP-dependent RNA helicase DeaD [Serratia odorifera DSM 4582]
 gi|291424294|gb|EFE97508.1| ATP-dependent RNA helicase DeaD [Serratia odorifera DSM 4582]
          Length = 642

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 136/378 (35%), Positives = 223/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 8   SFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLH 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+ N    + +  G  ++ Q + L 
Sbjct: 68  NLDAS---LKAPQILVLAPTRELAVQVAEAMTDFSKHMNGVNVVALYGGQRYDVQLRALR 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 125 QGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +         +         
Sbjct: 185 ALFSATMPEAIRRITRRFMKEPQEVRIQSSITTRPDISQSYWTAQGMRKNEA---LVRFL 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G+S  A++G+++Q  R + L   K+G + +++
Sbjct: 242 EAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILI 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 302 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 361

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 362 ERTMKLTIPEVELPNAEL 379


>gi|261342608|ref|ZP_05970466.1| cold-shock DEAD box protein A [Enterobacter cancerogenus ATCC
           35316]
 gi|288315255|gb|EFC54193.1| cold-shock DEAD box protein A [Enterobacter cancerogenus ATCC
           35316]
          Length = 629

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 133/378 (35%), Positives = 222/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLH 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     +R P+ L+L PTRELA QVA+   ++ K+      + +  G  ++ Q + L 
Sbjct: 67  NIDP---DLRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   + + Y     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +       + L
Sbjct: 361 ERTMKLTIPEAELPNAEL 378


>gi|88859624|ref|ZP_01134264.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas tunicata D2]
 gi|88818641|gb|EAR28456.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas tunicata D2]
          Length = 455

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 166/429 (38%), Positives = 240/429 (55%), Gaps = 6/429 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  ++ AV + GY  PTPIQ+  IP +++  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFARLGLSAPILDAVAEQGYDTPTPIQLAAIPAIIEGRDMMAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L KG+          +L PTRELAAQVA++ E YGKN  LT  ++ GG+    Q  +L
Sbjct: 61  ERLSKGKPAGNNQVRALVLTPTRELAAQVAESVELYGKNLKLTSFVVYGGVKVNPQMMRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD FN+  +  + +E+LV+DEADRMLDMGFI  I+ I  ++P  RQ
Sbjct: 121 RRGVDILVATPGRLLDLFNQRAVKFDQLEVLVLDEADRMLDMGFIHDIKKILKVLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +D+++ +++  + +P  + V   ++TA T+E                     
Sbjct: 181 NLMFSATFSDDIRNLAKGLINDPVEVSVAPANTTAATVEQRLHPVDKAKKPALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  K  ++F   K     L   LE    +  AIHGN  Q +RMK L+ FK+G ++++
Sbjct: 238 ILQNDWKQVLVFTRTKHGANRLVKQLEADKINAAAIHGNKSQSARMKALAGFKDGQVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLDI  +  V NFD+PN AE+Y+HRIGRTGRAG  G A + V  E+ K +  
Sbjct: 298 VATDIVARGLDIDQLPQVVNFDLPNIAEDYVHRIGRTGRAGASGHAISFVTTEEAKELAD 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE+LI   +  + + G   S       ++I      +   P    ST    +        
Sbjct: 358 IERLINATIAREVVPGFEPSNQVKETDLNIKAKKPKKAKKPREFSSTDGAAKVAQPRRSN 417

Query: 418 SHIPLKESE 426
           ++ P K+  
Sbjct: 418 ANSPAKKPA 426


>gi|260914551|ref|ZP_05921019.1| ATP-dependent RNA helicase RhlE [Pasteurella dagmatis ATCC 43325]
 gi|260631342|gb|EEX49525.1| ATP-dependent RNA helicase RhlE [Pasteurella dagmatis ATCC 43325]
          Length = 442

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 142/436 (32%), Positives = 226/436 (51%), Gaps = 11/436 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F D  L P ++ A+   GY +PT IQ +TIP  ++  DV G A TGTGKTA+F+LP + 
Sbjct: 5   TFDDFDLDPALLKALAKKGYTRPTAIQQETIPAAMEERDVLGSAPTGTGKTAAFLLPAIQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR L+L PTRELA QVA+  E+     NL++A + GG+ ++   +   
Sbjct: 65  HLLDYPRRKPGAPRVLVLTPTRELAMQVAEQAEELSAFTNLSIATITGGVAYQNHGEVFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR+L +         ++EIL+ DEADRML MGF    + I +   + +QT
Sbjct: 125 KNQDIVVATPGRLLQYIKEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL       L       ++   S  E  +      +A  ++    L     
Sbjct: 185 LLFSATLEGELLVDFAGRLLTDPVE-IDAEPSRRERKKIQQWFYHADSNEHKIKLLARFI 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++ +  GI+F  +++ V  L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 244 EEEKVSRGIVFVRRREYVRELSETLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGVVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIEDVSHVMNFDLPYSADTYLHRIGRTARAGKKGVAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           ++  E+ +       + +   LE    A  +   K     QK+    +R +    ++   
Sbjct: 364 KRYTEELLK------ARVIEGLEPRTKAPKDGEVKTVTKKQKARIKAKRDEKQKQEQKKK 417

Query: 421 PL---KESEKISKLQQ 433
                K+++ I K ++
Sbjct: 418 TKLRHKDTKNIGKRRK 433


>gi|153826515|ref|ZP_01979182.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-2]
 gi|149739695|gb|EDM53902.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-2]
          Length = 423

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 130/371 (35%), Positives = 205/371 (55%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L L P ++ A+ + G+ +PT +Q + IP  L   DV   A TGTGKTA+FV+P L 
Sbjct: 4   TFANLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L     R   P  + IL PTRELA QVA+  +   KN  L +  + GG+ ++     L 
Sbjct: 64  YLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L++ +  +     IE L++DEADRMLDMGF P +  +++   + +QT
Sbjct: 124 TTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     ++  + + L++P  ++   P    + I   +        K         
Sbjct: 184 LLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVE---LLKK 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F   ++ + +L   LEK       I G + Q  R   +S F+EG + ++
Sbjct: 241 ILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PD+ HV NFD+P  A+ Y+HRIGRTGRAG+ G A +LV   D   +  
Sbjct: 301 LATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMAR 360

Query: 360 IEKLIEKKVDW 370
           +E+ I+++V  
Sbjct: 361 VERYIKEEVKE 371


>gi|323491944|ref|ZP_08097113.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323313802|gb|EGA66897.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 482

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 176/467 (37%), Positives = 264/467 (56%), Gaps = 16/467 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ D GY KP+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIQDQGYDKPSPIQEQAIPAVLNGQDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L+ G   +    R LIL PTRELAAQV +N  KY +   LT  ++ GG+    Q  KL
Sbjct: 61  ERLDNGTRVKGNHVRALILTPTRELAAQVQENVFKYSRYQRLTSTVVFGGVKINPQMLKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G+D+++ TPGR+LD + +  +  + +E+LV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGSDIVVATPGRLLDLYQQNAIKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+       T      + Y    +K A +   L
Sbjct: 181 NLLFSATFSQEIRELAKGLVNNPVEISVSP---ENSTAVTIEQSIYPADKRKKAPMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  ++FC  K     L H L K+  +   IHGN  Q +R + L++FK G ++++
Sbjct: 238 IKDGDWKQVLVFCRTKHGANRLAHFLNKEEITAAPIHGNKSQGARTRALADFKSGDVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++PN +E+Y+HRIGRTGRAG  GKA +LV  ++   +  
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPNVSEDYVHRIGRTGRAGEVGKAISLVEADEASDLFG 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           IE+LI++ +     +L    P    P  K+D  +    +K     +  TG    +++  +
Sbjct: 358 IERLIQQVLPRF--ELEGFKPVNELPESKLDT-RPIKPKKPKKPKKPKTGHQDGQRSGDN 414

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
            + + P  ++++     +   EN+  +   RG   A    KNR   N
Sbjct: 415 ARGNKPAGKNKRHFGHNKLNGENNGSN-AKRGEGKA----KNRSTSN 456


>gi|168046775|ref|XP_001775848.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672855|gb|EDQ59387.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 482

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 138/419 (32%), Positives = 225/419 (53%), Gaps = 11/419 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL+  +V A  + G  +PT +Q   +P +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 45  TFEGLGLTDWLVRACKELGMKRPTLVQQGCVPQILAGKDVFGLAQTGSGKTAAFALPILQ 104

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    V     L+L PTRELA Q++D F+  G   NL   +++GG+    Q K L +
Sbjct: 105 KLAENPYGVFA---LVLTPTRELAFQISDQFKALGSEVNLRSTVVVGGMDMTTQAKALMQ 161

Query: 122 GADVLICTPGRILDHFNRGKLLMNNI---EILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              ++I TPGR+ DHF     + +     + LV+DEADR++D+GF   ++++   +P  R
Sbjct: 162 RPHIVIATPGRLRDHFMNDPGIPDVFAKAKYLVLDEADRLMDVGFESELRSVFETMPSNR 221

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATMT  L+ + +  L      +      T E ++  ++ T A       +    
Sbjct: 222 QTLLFSATMTSNLKALHDLSLDKAFFYQQYEGFKTVEALQQQYILTPANVKDVYLMHIMS 281

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +  +++ IIF +  +    L   + +      A+H    Q+ R+  LS FK G + +
Sbjct: 282 TLEERKIRSVIIFASSCRTCHLLSLMMSELEVDTTALHSMKTQQQRLASLSRFKSGQVSI 341

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDIP V  V N+D+P    +Y+HR+GRT RAGR G A +L+ + D++ + 
Sbjct: 342 LIATDVASRGLDIPTVDLVINYDIPRFTRDYVHRVGRTARAGRGGSAVSLITQYDVQLVQ 401

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            IE+L+ KK++    D   +   + K+       A++   +    +GF+ + K    QK
Sbjct: 402 DIEELLGKKLEEYELDEDKVLKSITKV-----YKAKRVAMLKIVDSGFEDKVKTRKEQK 455


>gi|327399574|ref|YP_004340443.1| DEAD/DEAH box helicase domain-containing protein [Hippea maritima
           DSM 10411]
 gi|327182203|gb|AEA34384.1| DEAD/DEAH box helicase domain protein [Hippea maritima DSM 10411]
          Length = 526

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 133/383 (34%), Positives = 218/383 (56%), Gaps = 12/383 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F  LGLS  ++  +   G+ KPTPIQ K IPL+LQ   D+   A TGTGKT +F LP++
Sbjct: 6   NFKGLGLSEGILKTLQKQGFEKPTPIQEKVIPLILQSSKDLVAEAPTGTGKTLAFGLPLI 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L++   +    + +IL PTRELA QV D    +     L    + GG   E Q ++L+
Sbjct: 66  DLLKE---KTGYVQAVILAPTRELAIQVCDEINAFKGKKRLKAFPIYGGQSIELQKRRLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+++ T GRI+DH NR  L ++ I+  ++DEAD ML+MGFI  I+ I +    T+  
Sbjct: 123 EGVDIVVGTAGRIIDHINRKTLNLSKIDYFILDEADEMLNMGFIDDIKEILTHTNPTKNM 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSATM +E++++++ +++ P+ + +       ++        +    +        ++
Sbjct: 183 FMFSATMPEEIKRLAKQYMKKPEFVRIE------KSKMLTSQIYFEVKEQDKFEALCRIR 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  G+IFC  K +  N+ + L  +G+   AIHG++ Q  R +IL  F++  I ++V
Sbjct: 237 DAVEDFYGLIFCKTKVDAQNVANKLIDRGYYADAIHGDLSQDKRERILKRFRDKKINMLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + HV N+ +P  AE+YIHRIGRTGRA + G A T V+  + + +  I
Sbjct: 297 ATDVAARGIDIDGLTHVINYSMPQDAESYIHRIGRTGRAQKKGIAITFVSPSEYRKLRLI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           +KL + ++      L S+   +E
Sbjct: 357 QKLAKAEIK--KEKLPSIQQAIE 377


>gi|325953815|ref|YP_004237475.1| DEAD/DEAH box helicase [Weeksella virosa DSM 16922]
 gi|323436433|gb|ADX66897.1| DEAD/DEAH box helicase domain protein [Weeksella virosa DSM 16922]
          Length = 586

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 135/374 (36%), Positives = 209/374 (55%), Gaps = 8/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59
           M F DLGL P+++ AV D G+V P+PIQ K IP +L    DV  +AQTGTGKTA+F LP+
Sbjct: 1   MTFKDLGLQPEILSAVEDMGFVSPSPIQEKAIPQILSSDQDVIALAQTGTGKTAAFGLPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
           L  L+  +  V+     IL PTREL  Q+A   E +  +   + +  + GG     Q K 
Sbjct: 61  LNQLDLSQKNVQAI---ILCPTRELCLQIAKEMESFAAHMQGVKIQAVYGGADIVKQIKG 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L     +++ TPGR +D   R  L +NNI   V+DEAD ML+MGF   I NI    P  +
Sbjct: 118 LRDNPQIVVGTPGRTMDLIKRNALKINNITWTVLDEADEMLNMGFRDEIDNILETTPEEK 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM  E+++++  ++  P  I V+  +  ++ IEH     Y   +    L  + 
Sbjct: 178 QTLLFSATMPREVRRIAAEYMFKPVEIAVSKVNMASKNIEH---QYYMVRASDRYLALKR 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +        GI+FC  ++    +   L + G++  A+HG++ Q  R  ++  F++  IQ+
Sbjct: 235 IADYYPSIYGIVFCKTRRETKEVADRLMQDGYNADALHGDLSQAQRDFVMDKFRKKNIQI 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ ++ HV N+ +P+  E Y+HR GRTGRAG  G +  +    + + + 
Sbjct: 295 LVATDVAARGIDVNELTHVINYSLPDDPEVYVHRSGRTGRAGNKGISIIIAHSREGRKVK 354

Query: 359 AIEKLIEKKVDWLN 372
            +EK I   ++   
Sbjct: 355 DVEKFISAPIELKK 368


>gi|322831220|ref|YP_004211247.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
 gi|321166421|gb|ADW72120.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
          Length = 640

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 135/378 (35%), Positives = 226/378 (59%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 8   SFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLH 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     ++ P+ L+L PTRELA QVA+    + K+ +    + +  G  ++ Q + L 
Sbjct: 68  NIDAS---LKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRALR 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 125 QGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F+++P+ + + +  +T   I   + + Y     +         
Sbjct: 185 ALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWSVYGLRKNEA---LVRFL 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G+S  A++G+++Q  R + L   K+G + +++
Sbjct: 242 EAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILI 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 302 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 361

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + +
Sbjct: 362 ERTMKLTIPEVEIPTAEV 379


>gi|308389528|gb|ADO31848.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha710]
          Length = 457

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 159/447 (35%), Positives = 250/447 (55%), Gaps = 29/447 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L+        P        +L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKSYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +      +
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNL---LE 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G ++
Sbjct: 242 RLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           ++I++L   K+             +E+I+  +     +    P+K    + R++N     
Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRY--- 406

Query: 418 SHIPLKESEKISKLQQDIQENDADSLG 444
                 ES K  + +    EN A+  G
Sbjct: 407 ------ESAKAQREKNTRPENAANDAG 427


>gi|148652953|ref|YP_001280046.1| DEAD/DEAH box helicase domain-containing protein [Psychrobacter sp.
           PRwf-1]
 gi|148572037|gb|ABQ94096.1| DEAD/DEAH box helicase domain protein [Psychrobacter sp. PRwf-1]
          Length = 516

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 141/388 (36%), Positives = 232/388 (59%), Gaps = 8/388 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL L+P+++ A+  +GY  PTPIQ  +IP  L   D+   AQTG+GKTA+FVLPML
Sbjct: 40  VTFVDLELAPELLEALTSSGYKHPTPIQALSIPPALAGRDLLLSAQTGSGKTAAFVLPML 99

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL-IGGIPFEAQNKKL 119
             + + +A  ++  T+IL PTRELA QV+D+  +Y        ++  +GG P+  Q + L
Sbjct: 100 DKIIRDKATNKVVHTVILTPTRELANQVSDSVRQYSSKTRNIFSVPLVGGAPYGGQIRAL 159

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  V+I TPGR +DH N G++ ++ ++IL++DEADRMLDMGF   I+ +    P  RQ
Sbjct: 160 NKGVQVIIATPGRFIDHMNSGRIDLSELDILILDEADRMLDMGFAEDIEKVMKAAPKNRQ 219

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++ SAT    + K++ +F  NP+RI++   +   +   +       +       +   L
Sbjct: 220 TIMCSATWDGPVGKIAASFTNNPERIDIKAETKHIDESVYYADDFNHKNR-----ILDNL 274

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +Q  +   IIF   K++   L  SL++QG     +HG++ Q  R +I+++ K G I ++
Sbjct: 275 LTQKDVNQAIIFAATKRSCETLAKSLKEQGHKASFLHGDLPQAKRSRIINDVKAGKITIL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HVFN+D+P + E+Y+HRIGR+GRAGR G A  + + +D   +DA
Sbjct: 335 VATDVAARGIDVSGITHVFNYDLPRQTEDYVHRIGRSGRAGRTGIAINICSIDDRAQLDA 394

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
           I + +++ +     ++  + P     D+
Sbjct: 395 INRYLKRTMSV--EEIEGMEPKKNTKDM 420


>gi|90414183|ref|ZP_01222164.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90324733|gb|EAS41271.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 462

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 132/448 (29%), Positives = 216/448 (48%), Gaps = 7/448 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL P+++  +   G+ + T IQ   +P+ +   DV   ++TG+GKT +F+LP +
Sbjct: 16  LHFKDLGLDPRLLKKLTHLGFDRATEIQRTAVPVAIMGKDVLASSKTGSGKTLAFLLPAM 75

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +G     R  R LIL PTRELA QV               AL++GG  F  Q K+ 
Sbjct: 76  QRMYRGKPFTRRDQRVLILTPTRELAKQVFAQLRTLNAGTPYDGALIVGGENFNDQVKEF 135

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +    ++ TPGR  DH       ++ +E+L++DEADRMLD+GF P ++ I  L    R+
Sbjct: 136 RKDPMFVVATPGRFADHLEHRSTSLDGLEMLILDEADRMLDLGFAPQLRRIHELANHRRR 195

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D    +            ++  +S  E  +         +      L   +
Sbjct: 196 QTLMFSATMDNEDVIEMASEMLNAPKRLSVGNSNEEHTDITQRFYLCDHLDHKQALLDKV 255

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   + +   L   L ++     A+ GN++Q  R  I+S F+    +++
Sbjct: 256 LETEDYNQVIIFTATRADTDRLTAELNERKLKAVALSGNLNQNQRNSIMSQFERVCHKIL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDI  V HV NFD+P  AE Y+HR+GRTGRAG  G A +LV  +D K   +
Sbjct: 316 VTTDVASRGLDIDGVSHVINFDMPKHAEEYVHRVGRTGRAGNKGDAISLVGPKDWKSFKS 375

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +E  +++ + +     L G    L P  +K  I +    +K +   +KST    +KK   
Sbjct: 376 VEAYLQQSISFSILEGLTGKFKGLKPAPKKKFIKKKPTDQKAS-AAKKSTAPKAKKKVDK 434

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADS 442
               ++ + E+    K ++D   +  D+
Sbjct: 435 RFYDNVAVGENVFKPKKKRDTDVSKDDA 462


>gi|332529812|ref|ZP_08405766.1| dead/deah box helicase domain protein [Hylemonella gracilis ATCC
           19624]
 gi|332040833|gb|EGI77205.1| dead/deah box helicase domain protein [Hylemonella gracilis ATCC
           19624]
          Length = 565

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 145/377 (38%), Positives = 231/377 (61%), Gaps = 8/377 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +L L+P ++ AV + GY  PT IQ + IPL+LQ +D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MNFEELKLAPAILKAVREQGYETPTAIQEQAIPLILQGNDLLGGAQTGTGKTAAFTLPLL 60

Query: 61  TILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L        +      R L+L PTRELAAQV ++   YGK   L   ++ GG+    Q
Sbjct: 61  HNLTMRRSAQNKWGGNGIRALVLTPTRELAAQVEESVRNYGKYLQLESTVIFGGVGMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             ++++G D+L+ TPGR+LD   +G + ++ +++LV+DEADRMLDMGFI  ++ + +L+P
Sbjct: 121 IARVKKGVDILVATPGRLLDLQQQGFMDLSQVQMLVLDEADRMLDMGFIHDVKKVLALLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE++ ++E  L+NP+ ++V   ++T + I            K     
Sbjct: 181 KDKQSLLFSATFSDEIRALAEGLLKNPQSVQVTPRNTTVQRITQSVHTVGRSKKKAL--- 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              + +       ++F   K    ++   L K G +  A+HGN  Q +R + L+ FK G 
Sbjct: 238 LAHIINAQDWSQVLVFTRTKFGANHVAEYLNKNGVTAMALHGNKSQGARTQALAGFKSGE 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ +VA+D+AARG+DI ++ HV N+++PN  E+Y+HRIGRTGRAGR G+A  LV  ++  
Sbjct: 298 IRALVATDIAARGIDIDELPHVVNYEIPNIPEDYVHRIGRTGRAGREGQAVNLVCLDEQG 357

Query: 356 HIDAIEKLIEKKVDWLN 372
            +  IE+  ++++  + 
Sbjct: 358 FMAEIERFTKQQIAVVE 374


>gi|91977976|ref|YP_570635.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
 gi|91684432|gb|ABE40734.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
          Length = 482

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 168/470 (35%), Positives = 245/470 (52%), Gaps = 21/470 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL+  +  A+ +  Y  PTPIQ +TIPL L   DV GIAQTGTGKTASF LP+L 
Sbjct: 9   SFQDFGLADPISRALQEENYTIPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILH 68

Query: 62  ILEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R + +     +L   PTREL+ Q+ D+F  YG++  L+  L IGG+P   Q + L
Sbjct: 69  RILADRIKPQPKNCRVLVLSPTRELSGQILDSFNAYGRHIRLSSTLAIGGVPMGRQVRSL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G +VL+ TPGR+LD      L +  +E LV+DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 129 MQGVEVLVATPGRLLDLVQSNALRLGQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM  ++  ++E  L++P R+ V   +ST E I    +            +   +
Sbjct: 189 TLFFSATMPKDIADLAEQMLRDPARVAVTPVASTVERINQRVIHLDHSAK---PAMLAQI 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             QD +   ++F   K     +   L++ G +  AIHGN  Q  R ++L+ F+ G ++ +
Sbjct: 246 LQQDGVNQALVFTRTKHGADKVVKGLQRAGITADAIHGNKSQNYRERVLAAFRTGELRTL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           VA+D+AARG+D+  V HV NFD+PN  E Y+HRIGRT RAG  G A +L A  E++ ++ 
Sbjct: 306 VATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGAEGTAISLCAGGEEVGYLR 365

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY----- 413
            IEKLI   +   +       P       A     ++N   P  + G D    +      
Sbjct: 366 DIEKLIRVALPKEDHRTPGAKPAPS---TAPQRGGQRNGGSPYPARGGDAAPGSNGPRRR 422

Query: 414 -----SSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
                 +   H   +  E          ++   + G +G   AF+  KNR
Sbjct: 423 RRAGGPTTGRHADARHPEAARHEPAARPQHGGQAEGLQG--VAFLQRKNR 470


>gi|550329|emb|CAA57417.1| putative RNA helicase [Dictyostelium discoideum]
          Length = 582

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 143/431 (33%), Positives = 218/431 (50%), Gaps = 11/431 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  GL+ KV   +    Y KPT IQ +TIP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 23  SWAQAGLTEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFR 82

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +            +  I+ PTRELA Q+    +K+ K   L  A + GG     Q  +L
Sbjct: 83  HILAQPKSAPGEGMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQIAEL 142

Query: 120 ERGADVLICTPGRIL---DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGAD+++CTPGR++      NR    +  +  LV+DEADRM DMGF P I  I   +  
Sbjct: 143 KRGADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSIRP 202

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ V++  L  P  I     S  +  IE            +   L 
Sbjct: 203 DRQTIMFSATFPPKVENVAKKILNKPLEIIAGGRSIVSSDIEQFV--EVRPTETRFRRLI 260

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL         +IF N+++   NL   L    +   ++HG+ DQ  R + +S+FK    
Sbjct: 261 ELLSIWYHKGQILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVK 320

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+ LA+RGLDI D+  V NFD P+  E+Y+HR+GRTGRAG  G A+T +  ++ + 
Sbjct: 321 TILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEERF 380

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
             +I K +E+    +  +L  LN   EK    +    +     P   TG   +       
Sbjct: 381 SSSIIKALEQSGSKVPDELRKLNDTYEK----KRKEGKDVLLAPTGFTGRGHKFDAAEED 436

Query: 417 KSHIPLKESEK 427
           K +I  K+  K
Sbjct: 437 KKNIERKQQRK 447


>gi|260223291|emb|CBA33706.1| Putative ATP-dependent RNA helicase rhlE [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 608

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 152/374 (40%), Positives = 233/374 (62%), Gaps = 8/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +L L+P +V AV + GY  PT IQ + IPLVL+ HD+ G AQTGTGKTA+F LP+L
Sbjct: 21  MNFEELKLAPAIVKAVREQGYETPTAIQAQAIPLVLEGHDLLGGAQTGTGKTAAFTLPLL 80

Query: 61  TILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L        +      R L+L PTRELAAQV ++  +YGK   L+  ++ GG+    Q
Sbjct: 81  HRLSMSRSAQNKFGGTGIRALVLTPTRELAAQVEESVRQYGKYLQLSSTVVFGGVGMNPQ 140

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             K+++G D+L+ TPGR+LD   +G L +  +++LV+DEADRMLDMGFI  ++ + +LVP
Sbjct: 141 ISKVKKGVDILVATPGRLLDLAQQGMLDLGQVQMLVLDEADRMLDMGFIHDVKKVLALVP 200

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE+++++   L+NP+ ++V   ++T + I            K     
Sbjct: 201 KEKQSLLFSATFSDEIRELANGLLKNPQSVQVTPRNTTVQRITQVIHPVGRGKKKAL--- 257

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              + ++      ++F   K    N+   LEK G +  A+HGN  Q +R + LS FK G 
Sbjct: 258 LAHIINEQNWSQVLVFTRTKFGANNVAEFLEKNGITAMALHGNKSQAARTQALSGFKSGD 317

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VA+D+AARG+DI D+ HV N+++PN +E+Y+HRIGRTGRAG  G A  LV  ++  
Sbjct: 318 VRALVATDIAARGIDIDDLPHVVNYEIPNVSEDYVHRIGRTGRAGADGAAVNLVCLDEEG 377

Query: 356 HIDAIEKLIEKKVD 369
            +  IE+  ++K++
Sbjct: 378 FMQDIERFTKQKIE 391


>gi|260596208|ref|YP_003208779.1| ATP-dependent RNA helicase DeaD [Cronobacter turicensis z3032]
 gi|260215385|emb|CBA27415.1| Cold-shock DEAD box protein A [Cronobacter turicensis z3032]
          Length = 638

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 133/378 (35%), Positives = 224/378 (59%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFTDLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLH 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     +R P+ L+L PTRELA QVA+    + K+ +    + +  G  ++ Q + L 
Sbjct: 67  NIDDT---LRAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++N++ LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVETIMAQIPAEHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   + + Y     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 ESEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|224081379|ref|XP_002306390.1| predicted protein [Populus trichocarpa]
 gi|222855839|gb|EEE93386.1| predicted protein [Populus trichocarpa]
          Length = 402

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 130/387 (33%), Positives = 205/387 (52%), Gaps = 15/387 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++GL   ++  + + G+ KP+ IQ + +  +++  DV   AQ+GTGKT+   L +  
Sbjct: 20  SFDEMGLKEDLLRGIYNYGFEKPSAIQQRALMPIIKGRDVIAQAQSGTGKTSMIALTVCQ 79

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     V+    LIL PTRELA Q        G+N N+ V   IGG       +KLE 
Sbjct: 80  LVDTASREVQA---LILSPTRELAEQTQRVITVIGENINIQVHACIGGKSVGEDIRKLEH 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I +LV+DE+D ML  GF   I ++   +P   Q +
Sbjct: 137 GVHVVSGTPGRVCDMIKRRSLRTRAIRVLVLDESDEMLSRGFKDQIYDVYRYLPPELQVV 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+ +E+ +++  F+ +P +I V     T E I+  FVA   +  K        L  
Sbjct: 197 LISATLPNEILEITSKFMTDPVKILVKRDELTLEGIKQFFVAVEKEEWKFET--LTDLYD 254

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+SNF+ G  ++++ 
Sbjct: 255 TLTITQAVIFCNTKRKVDWLTAKMVEFNFTVSSMHGDMPQKERDAIMSNFRSGETRVLIT 314

Query: 302 SDLAARGLDIPD----------VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +D+ ARGLD+            V  V N+D+PN  E YIHRIGR+GR GR G A   V  
Sbjct: 315 TDVWARGLDVQQASSLSSSSSIVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKS 374

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           +DI+ +  IE+    ++D +  ++  L
Sbjct: 375 DDIRILRDIEQYYSTQIDEMPMNIGDL 401


>gi|254372659|ref|ZP_04988148.1| ATP-dependent RNA helicase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570386|gb|EDN36040.1| ATP-dependent RNA helicase [Francisella novicida GA99-3549]
          Length = 569

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 150/433 (34%), Positives = 241/433 (55%), Gaps = 14/433 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGL+  +V  V+  GY  PTPIQ   IP +L   DV G AQTGTGKTA+F LP++ 
Sbjct: 8   DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++    R R P+ L+L PTRELA QVA+ FE + KN        I  G  + +Q + L+
Sbjct: 68  NMDLAS-RDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ T GR++DH  +G L ++N+  LV+DEAD ML MGFI  ++ + S V    Q 
Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQCQR 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++  + E +L+NP +I+V   + TA T+   F+                 +
Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETE 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +   IIF   K + + +  +L+  G+ V AI+G++ Q  R  I+  F+     ++V
Sbjct: 247 ETDGV---IIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+  + HV N+D+PN  + Y+HRIGRTGRAGR G + +LV  ++++ +  +
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ--HNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           E+     +  +        P  + +  ++  H  AR  + +  K+   D+ K+  +S + 
Sbjct: 364 ERFTGSPMQEV------FMPSAKDLAQSRVEHFKARIISAL-DKNKSLDKYKEIITSIRD 416

Query: 419 HIPLKESEKISKL 431
            + L   E ++ L
Sbjct: 417 ELQLDSEELLAGL 429


>gi|218186850|gb|EEC69277.1| hypothetical protein OsI_38328 [Oryza sativa Indica Group]
          Length = 802

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 153/453 (33%), Positives = 225/453 (49%), Gaps = 22/453 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  ++ A    GY KPTPIQ   IPL L   D+CG A TG+GKTA+F LP+L 
Sbjct: 195 SFLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLE 254

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     RV   R LIL PTRELAA V    EK  +  ++   L++GG+  + Q   L  
Sbjct: 255 RLLFRPKRVPAIRVLILTPTRELAAPVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRS 314

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D+++ TPGRI+DH  N   + + ++ IL++DEADR+L++GF   IQ +  + P  RQT
Sbjct: 315 MPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCPRRRQT 374

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+E+ ++    L  P R+E +       T+    V            +   L 
Sbjct: 375 MLFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREANQEAVLLALC 434

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      IIF   K +   L       G     +HGN+ Q  R++ L  FK+  +  ++
Sbjct: 435 LKTFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDFLI 494

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  V  V NF  P  A  Y+HR+GRT RAGR G A T V  +D   + AI
Sbjct: 495 ATDVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAI 554

Query: 361 EKLIEKK-----------------VDWLNGDLSSLNPPLEKIDI---AQHNHARKNNPIP 400
            K    +                 ++ L   +S++     +  I   A+    +  N I 
Sbjct: 555 AKKAGSQLKSRIVAEKPVAECAKLIEELEDQISTIIQEEREERILRKAEMEATKAENMIA 614

Query: 401 QKSTGFDRRKKN-YSSQKSHIPLKESEKISKLQ 432
            K   + R K+  ++++K    L ++ K S  Q
Sbjct: 615 HKDEIYSRPKRTWFATEKEKKLLAKAAKESTSQ 647


>gi|157368407|ref|YP_001476396.1| ATP-dependent RNA helicase RhlB [Serratia proteamaculans 568]
 gi|189040037|sp|A8G828|RHLB_SERP5 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|157320171|gb|ABV39268.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
          Length = 428

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 137/422 (32%), Positives = 215/422 (50%), Gaps = 11/422 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P V+ A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPLVLEALEKKGFQHCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                  K   ++  PR LI+ PTRELA Q+  + E   ++  L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAKQDRKINQPRALIMAPTRELAVQIHSDAEALSQSTGLKMGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+L+ T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILVGTTGRLIDYAKQNYIDLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAV 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 DQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G + 
Sbjct: 249 TLIEEEWPDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGNLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE      +     +    LS L  P +++   +  +  + N  P++  G  R  +  
Sbjct: 369 PAIETYTGHSIPVSKYNSDALLSDLPAP-KRLARPRGGNGPRRNSAPRRG-GAPRNNRKR 426

Query: 414 SS 415
           S 
Sbjct: 427 SG 428


>gi|115488568|ref|NP_001066771.1| Os12g0481100 [Oryza sativa Japonica Group]
 gi|113649278|dbj|BAF29790.1| Os12g0481100 [Oryza sativa Japonica Group]
          Length = 832

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 154/453 (33%), Positives = 226/453 (49%), Gaps = 22/453 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  ++ A    GY KPTPIQ   IPL L   D+CG A TG+GKTA+F LP+L 
Sbjct: 225 SFLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLE 284

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     RV   R LIL PTRELAAQV    EK  +  ++   L++GG+  + Q   L  
Sbjct: 285 RLLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRS 344

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D+++ TPGRI+DH  N   + + ++ IL++DEADR+L++GF   IQ +  + P  RQT
Sbjct: 345 MPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCPRRRQT 404

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+E+ ++    L  P R+E +       T+    V            +   L 
Sbjct: 405 MLFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREANQEAVLLALC 464

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      IIF   K +   L       G     +HGN+ Q  R++ L  FK+  +  ++
Sbjct: 465 LKTFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDFLI 524

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  V  V NF  P  A  Y+HR+GRT RAGR G A T V  +D   + AI
Sbjct: 525 ATDVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAI 584

Query: 361 EKLIEKK-----------------VDWLNGDLSSLNPPLEKIDI---AQHNHARKNNPIP 400
            K    +                 ++ L   +S++     +  I   A+    +  N I 
Sbjct: 585 AKKAGSQLKSRIVAEKPVAECAKLIEELEDQISTIIQEEREERILRKAEMEATKAENMIA 644

Query: 401 QKSTGFDRRKKN-YSSQKSHIPLKESEKISKLQ 432
            K   + R K+  ++++K    L ++ K S  Q
Sbjct: 645 HKDEIYSRPKRTWFATEKEKKLLAKAAKESTSQ 677


>gi|143454043|sp|Q0INC5|RH28_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 28
 gi|77555691|gb|ABA98487.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
           Japonica Group]
 gi|125579336|gb|EAZ20482.1| hypothetical protein OsJ_36091 [Oryza sativa Japonica Group]
 gi|215706455|dbj|BAG93311.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 802

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 154/453 (33%), Positives = 226/453 (49%), Gaps = 22/453 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  ++ A    GY KPTPIQ   IPL L   D+CG A TG+GKTA+F LP+L 
Sbjct: 195 SFLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLE 254

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     RV   R LIL PTRELAAQV    EK  +  ++   L++GG+  + Q   L  
Sbjct: 255 RLLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRS 314

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D+++ TPGRI+DH  N   + + ++ IL++DEADR+L++GF   IQ +  + P  RQT
Sbjct: 315 MPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCPRRRQT 374

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+E+ ++    L  P R+E +       T+    V            +   L 
Sbjct: 375 MLFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREANQEAVLLALC 434

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      IIF   K +   L       G     +HGN+ Q  R++ L  FK+  +  ++
Sbjct: 435 LKTFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDFLI 494

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  V  V NF  P  A  Y+HR+GRT RAGR G A T V  +D   + AI
Sbjct: 495 ATDVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAI 554

Query: 361 EKLIEKK-----------------VDWLNGDLSSLNPPLEKIDI---AQHNHARKNNPIP 400
            K    +                 ++ L   +S++     +  I   A+    +  N I 
Sbjct: 555 AKKAGSQLKSRIVAEKPVAECAKLIEELEDQISTIIQEEREERILRKAEMEATKAENMIA 614

Query: 401 QKSTGFDRRKKN-YSSQKSHIPLKESEKISKLQ 432
            K   + R K+  ++++K    L ++ K S  Q
Sbjct: 615 HKDEIYSRPKRTWFATEKEKKLLAKAAKESTSQ 647


>gi|322834137|ref|YP_004214164.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
 gi|321169338|gb|ADW75037.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
          Length = 442

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 148/434 (34%), Positives = 227/434 (52%), Gaps = 18/434 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L  +++ A+ D GY +PT IQ + IP  +   DV G A TGTGKTA+F+LP + 
Sbjct: 5   TFSELELDERLIEALGDKGYSRPTVIQAEAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVA+   +  K+  L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVAEQARELAKHTELDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          IE L++DEADRMLDMGF   I+ I++   + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAIETLILDEADRMLDMGFAQDIETISAEARWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT   + +++ +E  L  P  IE +      + I   +        K    +   L
Sbjct: 185 LLFSATLEGEAIREFAERILTEPVEIEADPSRRERKKILQWYYRADDLAHKTR--MLIHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+ +   +IF  +++ V  L   L + G + C + G + Q  R + +    E  + ++
Sbjct: 243 LKQEDVTKSVIFVRKRERVHELVAWLREAGINSCYLEGEMVQVKRTEAVKRMVEDRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A + V   D   +  
Sbjct: 303 VATDIAARGLDINDISHVFNFDLPLTADIYLHRIGRTGRAGRKGTAISFVEAHDHLLLGK 362

Query: 360 IEKLIEK--KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ- 416
           I + + +  K   L+        P EK+              P K     R++K  ++Q 
Sbjct: 363 IGRYLNEPLKARVLDEFRPKTKAPSEKV-----------TGKPSKKVLAKRKEKQKAAQE 411

Query: 417 KSHIPLKESEKISK 430
           KS + +K   + SK
Sbjct: 412 KSKVKVKVRHRDSK 425


>gi|198274601|ref|ZP_03207133.1| hypothetical protein BACPLE_00753 [Bacteroides plebeius DSM 17135]
 gi|198272048|gb|EDY96317.1| hypothetical protein BACPLE_00753 [Bacteroides plebeius DSM 17135]
          Length = 424

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 129/410 (31%), Positives = 217/410 (52%), Gaps = 12/410 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L   V+ A+    + + TP+Q  TIP++L+  D+ G+AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELNLEDSVLDALDAMNFQECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L KG         +I+ PTRELA Q+    E +     ++   + GG       ++ +
Sbjct: 61  NQLSKGGYPEDAINCIIMSPTRELAMQIDQQMEGFSYFMPVSSVAVYGGNDGIRFEQEKK 120

Query: 121 RGA---DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 DV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q++++  L +P  +++       +       A Y  Y  +   + Q
Sbjct: 181 RQTIMFSATMPTKIQQLAKTILHDPVEVKLAVSKPAEKI----IQAAYICYEAQKLGIIQ 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L      +  IIF + K  V  +  +L++   +V  +H +++Q  R +I+  F+   I 
Sbjct: 237 SLFQSQQPERVIIFASSKLKVKEVTKALKRMKLNVGEMHSDLEQSQREEIMHEFRNRRID 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V++ +    
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGCAITFVSETEQTRF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
             IE  + K +  L      +   L +  +     +RK      K+   +
Sbjct: 357 KQIETFLGKDIYKLP-----VPEELGEGPVYAPRTSRKEGGKQVKNFSRN 401


>gi|121704610|ref|XP_001270568.1| ATP dependent RNA helicase (Dhh1), putative [Aspergillus clavatus
           NRRL 1]
 gi|142981101|sp|A1CJ18|DHH1_ASPCL RecName: Full=ATP-dependent RNA helicase dhh1
 gi|119398714|gb|EAW09142.1| ATP dependent RNA helicase (Dhh1), putative [Aspergillus clavatus
           NRRL 1]
          Length = 503

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 187/377 (49%), Gaps = 7/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     + +    LIL PTRELA Q +   +  GK+  + V +  GG        +L 
Sbjct: 107 ERINPKSTKTQA---LILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRLN 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGR+LD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 164 DAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F     R           T+            K+       L 
Sbjct: 224 MLFSATFPLIVKS----FKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q+ R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYKI 399

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +  ++  
Sbjct: 400 EQELGTEIQPIPQNIDK 416


>gi|270265065|ref|ZP_06193328.1| cold-shock DEAD box protein A [Serratia odorifera 4Rx13]
 gi|270040999|gb|EFA14100.1| cold-shock DEAD box protein A [Serratia odorifera 4Rx13]
          Length = 655

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 135/378 (35%), Positives = 223/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 8   SFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLH 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 68  NLDAS---LKAPQILVLAPTRELAVQVAEAMTDFSKHMTGVNVVALYGGQRYDVQLRALR 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 125 QGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F+++P+ + + +  +T   I   +         +         
Sbjct: 185 ALFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTAQGMRKNEA---LVRFL 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G+S  A++G+++Q  R + L   K+G + +++
Sbjct: 242 EAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILI 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 302 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 361

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 362 ERTMKLTIPEVELPNAEL 379


>gi|28897279|ref|NP_796884.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260876244|ref|ZP_05888599.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AN-5034]
 gi|260896422|ref|ZP_05904918.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus Peru-466]
 gi|260902727|ref|ZP_05911122.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ4037]
 gi|28805488|dbj|BAC58768.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088406|gb|EFO38101.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus Peru-466]
 gi|308092964|gb|EFO42659.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AN-5034]
 gi|308107646|gb|EFO45186.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ4037]
 gi|328472043|gb|EGF42920.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 10329]
          Length = 407

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 200/371 (53%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L L   ++ A+ + GY +PT IQ + IP  L   D+   A TGTGKTA+FVLP L 
Sbjct: 4   TFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    R   P  + IL PTRELA QVAD      KN  L +  + GG+ ++     L 
Sbjct: 64  YLQDFPRRKPGPARILILTPTRELAMQVADQARALAKNTKLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+ ++ +  +     IE LV+DEADRMLDMGF P +  +++   + +QT
Sbjct: 124 TTQDIVVATPGRLREYIDAERFDCRAIEWLVLDEADRMLDMGFAPTVDRLSNECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     ++  + + L  P  I+  +P    + I   +    +   K         
Sbjct: 184 LLFSATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADSAEHKLA---LLKH 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F   ++ +  L   LE        I G + Q  R   ++ F++GT+ ++
Sbjct: 241 IITEQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFRDGTVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A ++V   D   +D 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR 360

Query: 360 IEKLIEKKVDW 370
           + + +++ +  
Sbjct: 361 VARYVKEDIKE 371


>gi|290511539|ref|ZP_06550908.1| ATP-dependent RNA helicase DeaD [Klebsiella sp. 1_1_55]
 gi|289776532|gb|EFD84531.1| ATP-dependent RNA helicase DeaD [Klebsiella sp. 1_1_55]
          Length = 659

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 133/378 (35%), Positives = 222/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 23  TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLN 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     +R P+ L+L PTRELA QVA+   ++ K+      + +  G  ++ Q + L 
Sbjct: 83  NIDP---ELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALR 139

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 140 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 199

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   Y     +         
Sbjct: 200 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEA---LVRFL 256

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 257 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 316

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 317 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 376

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 377 ERTMKLTIPEVELPNAEL 394


>gi|206579682|ref|YP_002236428.1| cold-shock DEAD box protein A [Klebsiella pneumoniae 342]
 gi|288933410|ref|YP_003437469.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
 gi|206568740|gb|ACI10516.1| cold-shock DEAD box protein A [Klebsiella pneumoniae 342]
 gi|288888139|gb|ADC56457.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
          Length = 643

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 133/378 (35%), Positives = 222/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     +R P+ L+L PTRELA QVA+   ++ K+      + +  G  ++ Q + L 
Sbjct: 67  NIDP---ELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   Y     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|27367036|ref|NP_762563.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus CMCP6]
 gi|27358604|gb|AAO07553.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus CMCP6]
          Length = 509

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 180/469 (38%), Positives = 266/469 (56%), Gaps = 21/469 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP +L+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIQEKGYDTPSPIQLQAIPAILEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L KG   R    R LIL PTRELAAQV +N   Y ++ +L  A++ GG+    Q  +L
Sbjct: 61  ERLAKGPRVRANHIRALILTPTRELAAQVQENVFMYSRHLDLNSAVVFGGVKINPQMLRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +++  +  + +E+L++DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLYSQNAVKFDQLEVLILDEADRMLDMGFIRDIRKILALLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++++++  + NP  I VN  +STA T+E C         KK   +   L
Sbjct: 181 NLLFSATFSDEIRELAKGLVNNPIEISVNPANSTARTVEQCIYPADV---KKKPAMLAKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  ++F   K     L   L  QG +  AIHGN  Q +R K L++FK G ++++
Sbjct: 238 IKDGDWQQVLVFTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV   +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGETGKAISLVCALEAPELFA 357

Query: 360 IEKLIEKKVDW--LNGDLSSLNPPLEKIDI------AQHNHARKNNPIPQKSTGFDRRKK 411
           IE+LI++ +    L G   +   P  K+D             +   P  + +      K 
Sbjct: 358 IERLIQELLPRKALEGYAPTNAVPESKLDTRPIKPKKPKKPKKPKAPNAEAAGSDASSKG 417

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQ-----ENDADSLGFR----GNMPA 451
           N  ++ +  P  ++    K ++         ND+ + G R    G+ PA
Sbjct: 418 NQKAKAADKPQGQNRGNGKAKRQFSAPKEGNNDSTNKGKRPNTKGSKPA 466


>gi|298708482|emb|CBJ30606.1| eukaryotic initiation factor 4A [Ectocarpus siliculosus]
          Length = 404

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L  +++  +   G+ KP+ IQ + +  +L   D    AQ+GTGKTA+F + +L 
Sbjct: 32  TFDAMELREELLRGIYAYGFEKPSAIQQRAVKPILMGKDCIAQAQSGTGKTATFAVSILQ 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + L+L PTRELA Q+       G    L V   +GG       + L+ 
Sbjct: 92  KIDVA---AADCQALVLAPTRELAQQIVKVVRALGDFMQLQVHACVGGTAVRDDIRTLQN 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D  +RG L ++ + + V+DEAD ML  GF   I ++   +P   Q  
Sbjct: 149 GVHIVVGTPGRVYDMISRGALRLDRVGLFVLDEADEMLSRGFKDQIYDVFQYLPERVQVA 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  ++ +V+  F+  P RI V     T E I+  ++A   +  K   L       
Sbjct: 209 LFSATMPLDVLEVTNRFMPEPVRILVKKDELTLEGIKQFYIAVDREEWKLDTLCDL--YE 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   II+CN ++ V  L   ++++ F++  +HG++ Q  R  I+  F+ G+ ++++ 
Sbjct: 267 TLTITQAIIYCNTRRRVDWLSEKMQERDFTISCMHGDMGQGERDVIMREFRSGSSRVLIT 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V + D++++  IE
Sbjct: 327 TDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTQGDVRYLRDIE 386

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +V+ +  +++ L
Sbjct: 387 EFYTTQVEEMPMNVADL 403


>gi|291614123|ref|YP_003524280.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291584235|gb|ADE11893.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 511

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 158/438 (36%), Positives = 244/438 (55%), Gaps = 5/438 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            FA LGL+P ++ AV DAGY  P+PIQ + IP  L  HD+   AQTGTGKTA+F+LP + 
Sbjct: 19  TFATLGLNPAILKAVQDAGYTVPSPIQAQAIPEALAGHDLMASAQTGTGKTAAFILPALQ 78

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  +   R + PR L+L PTRELA QV+D   KYGKN  + V  ++GG+P+  QNK L 
Sbjct: 79  RLSVESAVRSKGPRVLVLTPTRELAQQVSDAANKYGKNMRVKVVSILGGMPYPLQNKLLS 138

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+L+ TPGR++DH  RG++  + +E+LV+DEADRMLDMGFI  ++ I +  P TRQT
Sbjct: 139 GFVDILVATPGRLIDHIERGRIDFSRLEMLVLDEADRMLDMGFIDDVERIAAATPATRQT 198

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+   +  +++  L++PKRI V +  +  E IE   +       K    L   L 
Sbjct: 199 LLFSATLEGVIGNLAQRLLKSPKRISVTSAQAKHENIEQRLMYVDDMAHKNR--LLDHLL 256

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   ++F   K++  +L   L   G +  A+HG+++QR R + L N + G ++++V
Sbjct: 257 RDVDLNQALVFTATKRDADSLADELSAAGHAAAALHGDMNQRERNRTLLNLRRGNVRVLV 316

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV NFD+P  AE+Y+HRIGRTGR G  G A +  +  D  H+  I
Sbjct: 317 ATDVAARGIDVAGITHVINFDLPKFAEDYVHRIGRTGRGGASGIAVSFASNRDAMHLKKI 376

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+   + +      +  + P  +    +    +             +      +  +   
Sbjct: 377 ERYTGQPIK--THTVEGMEPKFKPRPASSQPRSGAGRSNGGGFGRNNGGGNGGNFSRHAA 434

Query: 421 PLKESEKISKLQQDIQEN 438
           P    E     +++  ++
Sbjct: 435 PDSRHEHPQGQRREGHKH 452


>gi|158284342|ref|XP_306246.4| Anopheles gambiae str. PEST AGAP012523-PA [Anopheles gambiae str.
           PEST]
 gi|157021090|gb|EAA02455.4| AGAP012523-PA [Anopheles gambiae str. PEST]
          Length = 720

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 140/465 (30%), Positives = 232/465 (49%), Gaps = 3/465 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G    ++ ++  + +  PTPIQ + IP  L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 204 SFAHFGFDESLMKSIRKSEFSTPTPIQAQAIPAALSGRDIIGIAKTGSGKTAAFLWPMLV 263

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + ++       P  LIL PTREL+ Q+ +  +K+GK YN+++    GG     Q+K L
Sbjct: 264 HIMDQRELGPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNISICCCYGGGSKWEQSKAL 323

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+GA++++ TPGR++D        +  +  LV+DEAD+M +MGF P +++I + +   RQ
Sbjct: 324 EQGAEIVVATPGRMIDMVKIKATNLQRVTYLVLDEADKMFNMGFEPQVRSICNHIRPDRQ 383

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    ++K++ + L +P RI           +    +      SK    L   L
Sbjct: 384 TLLFSATFKKRVEKLARDVLTDPVRIIHGDLGEANSDVTQRIILLPTVQSKW-NWLLTNL 442

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               +  + +IF  +K +     ++L  +   V  +HG++DQ  R  +++ FK   + +M
Sbjct: 443 VKMLSEGSVLIFVTKKADAEETANNLRLKDNDVVLLHGDMDQSERNFVITRFKRKDVDIM 502

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+D+    + + HRIGRTGRAG  G A+TL+  +D +    
Sbjct: 503 VATDVAARGLDIPHIRTVVNYDIARDIDTHTHRIGRTGRAGEKGTAYTLITDKDKEFSGH 562

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           + + +E     +  DL  L         ++  HA K   +     G   R++        
Sbjct: 563 LVRNLEGANQDVPEDLMKLAMQSSWFRNSRFKHANKGKNLNVGGAGLGFRQRAIQRGPMG 622

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
             L  S+ + +       +   S G   +  + M    R   N +
Sbjct: 623 RSLDASKVLVEDGDPSGPSPGSSKGPATDRLSAMRETFRAHYNAQ 667


>gi|21672635|ref|NP_660702.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25090073|sp|Q8K9H6|DEAD_BUCAP RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|21623269|gb|AAM67913.1| ATP-dependent RNA helicase DEAD [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 601

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 139/372 (37%), Positives = 224/372 (60%), Gaps = 8/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ LGL+P ++ ++   GYVKP+PIQ   IPL+L+  DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFSFLGLNPFIIKSLSKMGYVKPSPIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLPLLH 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA-QNKKLE 120
            L      ++ P+ L+L PTRELA QVA+ F  + K       L + G      Q + L 
Sbjct: 67  NLNIN---LKAPQILVLAPTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRYEVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I S +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLNLSNLYALVLDEADEMLRMGFIEDVETIMSQIPKEHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + ++++S+ F++NP+ I++ +  +T   I+  +   Y + +       +   
Sbjct: 184 ALFSATMPEAIRRISKRFMKNPQEIKIQSNITTRPDIKQSYWMVYGRKTDALIRFLE--- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K G + +++
Sbjct: 241 -VEDFSATIIFVKTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKSGRLDILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 359

Query: 361 EKLIEKKVDWLN 372
           E+ I + +  + 
Sbjct: 360 ERTINQTIPEVQ 371


>gi|87121447|ref|ZP_01077336.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
           sp. MED121]
 gi|86163290|gb|EAQ64566.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
           sp. MED121]
          Length = 418

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 156/421 (37%), Positives = 231/421 (54%), Gaps = 11/421 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   ++  V   GY  PTPIQ++ IP VL   DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFTSLGLHSFLLEQVELLGYQTPTPIQLEAIPAVLANKDVMAGAQTGTGKTAAFALPLL 60

Query: 61  T-----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                    +          L+L PTRELA QV  +F  YG+   L   +  GG     Q
Sbjct: 61  HRLFEAHQIENPEPNNQVSVLVLTPTRELAQQVYKSFCDYGQALPLRSVVAYGGASINPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             ++ +G DVL+ TPGR+L+   +  + ++ ++ LV+DEADRMLDMGFI  IQ I   +P
Sbjct: 121 IDEIRQGVDVLVATPGRLLELVMKDLVDVSQLKTLVLDEADRMLDMGFIIDIQRILKRLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +QTL FSAT  D + K+S+  LQ+P  IEV+  +++AE +E  F A   +        
Sbjct: 181 QQKQTLFFSATFDDAIFKLSKTLLQDPVLIEVDQRNTSAEQVEQIFYAVDKEKKSGLISY 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                     +  +IF   K+    L   ++K G    AIHG+  Q +R ++L+ FK G 
Sbjct: 241 L---IGSKNWQQVLIFTRTKEGADRLAKEMKKDGIETQAIHGDKSQGARDRVLAAFKAGE 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VA+D+AARGLDI  + +V N ++P  AE+YIHRIGRTGRAG+ G A +L+++++  
Sbjct: 298 LRALVATDVAARGLDIEALSYVINHELPYNAEDYIHRIGRTGRAGQSGLAVSLLSEKENY 357

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQ-HNHARKNNPIPQKSTGFDRRKKN 412
            +  IEKL++  +   W  G    L+ P  K +     N  ++N  +  K    ++R + 
Sbjct: 358 LLKDIEKLLDTPLASQWYPGFEPDLDKPESKSNKRPLSNKEKRNQALGIKPKAKNKRPRR 417

Query: 413 Y 413
            
Sbjct: 418 R 418


>gi|145628788|ref|ZP_01784588.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
 gi|144979258|gb|EDJ88944.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
 gi|309750162|gb|ADO80146.1| ATP-dependent RNA helicase [Haemophilus influenzae R2866]
          Length = 439

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 138/398 (34%), Positives = 212/398 (53%), Gaps = 6/398 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP + 
Sbjct: 5   QFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEECDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++       
Sbjct: 65  HLLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QT
Sbjct: 125 TNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL       L N     V+   S  E  +      +A  ++    L     
Sbjct: 185 LLFSATLEGELLVDFAERLLNDPVK-VDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +  GI+F  ++++   L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 244 ETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPPL--EKIDIAQHNHAR 394
           ++  E+  K   L G      PP   E   +++   AR
Sbjct: 364 KRYTEEILKARILAGLEPRTKPPKDGEVKSVSKKQKAR 401


>gi|194477246|ref|YP_002049425.1| putative ATP-dependent RNA helicase [Paulinella chromatophora]
 gi|171192253|gb|ACB43215.1| putative ATP-dependent RNA helicase [Paulinella chromatophora]
          Length = 631

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 137/371 (36%), Positives = 214/371 (57%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD GL+ +++ AV + GY +P+PIQ   IP ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 63  FADFGLNAEILQAVTEKGYKQPSPIQAAAIPELMLGRDLVGQAQTGTGKTAAFALPLLAR 122

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++  +     P+ L+L PTRELA QVAD+F  Y  +      L +  G  F  Q  +L+R
Sbjct: 123 MDPDQRS---PQVLVLAPTRELAVQVADSFSTYAAHLPHIRVLPVYGGADFRDQINRLKR 179

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  +G L ++ + +LV+DEAD ML MGFI  ++ I   +P  RQ +
Sbjct: 180 GIQVVVGTPGRVMDHMRQGTLDLSGLRVLVLDEADEMLRMGFIDDVEWIIEQLPKQRQVV 239

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++S N+L NP  I   T                  ++         +  
Sbjct: 240 LFSATMPTEIRRISLNYLNNPAEI---TIRQKGSDASRIRQRYLMVHAPHKLEALNRVLE 296

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +T +  IIF   K   V +  SLE  G  V  ++G++ Q  R + +   ++G+I ++VA
Sbjct: 297 AETGEGVIIFGRTKAITVTIAESLELTGHDVAVLNGDVAQSQRERTIERLRKGSINILVA 356

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V  V N+D+P  +E Y+HRIGRTGRAGR G A   +   + + +  +E
Sbjct: 357 TDVAARGLDVDRVSLVINYDIPFDSEAYVHRIGRTGRAGRTGDAILFLTPRERRFLGGLE 416

Query: 362 KLIEKKVDWLN 372
           + + + ++ ++
Sbjct: 417 RAVGRPIEPMD 427


>gi|153830439|ref|ZP_01983106.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           623-39]
 gi|229514213|ref|ZP_04403674.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
 gi|254285788|ref|ZP_04960751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           AM-19226]
 gi|148874080|gb|EDL72215.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           623-39]
 gi|150424285|gb|EDN16223.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           AM-19226]
 gi|229348193|gb|EEO13151.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
 gi|327485774|gb|AEA80180.1| ATP-dependent RNA helicase VCA0768 [Vibrio cholerae LMA3894-4]
          Length = 422

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 148/409 (36%), Positives = 231/409 (56%), Gaps = 11/409 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGL  +++  + + G V PTPIQ + IP VLQ  DV   AQTGTGKTA+F LP++
Sbjct: 6   ITFSQLGLDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65

Query: 61  TILEKGRARVRMPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               +   +       I      PTRELA QV D+ + Y K   L +  + GG   + Q 
Sbjct: 66  QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G D+LI TPGR+LDH +   L +  +E+LV+DEADRMLDMGF+P +Q +   +  
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSAT   +++ V+   +++P  ++V   +STAET+       Y    K+   L 
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETV---QQMVYPVDKKRKRELL 242

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L      +  ++F   ++    L   L+  G    +I+G+  Q +R K L +FK G +
Sbjct: 243 SYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L++ ++   
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQ 362

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           ++AIE+L+  ++  +WL G   S  P + + +  + +  R +     K+
Sbjct: 363 LEAIERLLNTRLPQEWLKGFEPS--PVVHEENSPRRSAGRSSEKRKLKA 409


>gi|261188002|ref|XP_002620418.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis SLH14081]
 gi|239593429|gb|EEQ76010.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis SLH14081]
          Length = 548

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 130/381 (34%), Positives = 214/381 (56%), Gaps = 4/381 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ KPT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 131 TFDEAGFPQYVMSEVKAQGFAKPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 190

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 191 HINAQPLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQIRDL 250

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 251 TRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 310

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T ++SAT   ++++++++FL +  ++ + +   +A       V   +++ K+  + + L 
Sbjct: 311 TCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAKHLD 370

Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  +  K+   +IF   K+   ++   L + G+   +IHG+  Q  R  +L+ FK G   
Sbjct: 371 RIMEENKSAKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSP 430

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG  G A TL   ++ K  
Sbjct: 431 IMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQA 490

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             +  ++ +    ++  L+ +
Sbjct: 491 RDLVSILTESKQQIDPRLAEM 511


>gi|295134684|ref|YP_003585360.1| ATP-dependent RNA helicase [Zunongwangia profunda SM-A87]
 gi|294982699|gb|ADF53164.1| ATP-dependent RNA helicase [Zunongwangia profunda SM-A87]
          Length = 447

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 137/399 (34%), Positives = 220/399 (55%), Gaps = 6/399 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L+  +  A+ + G  KPTPIQ +    V+   DV GIAQTGTGKT +++LP+L
Sbjct: 1   MSFQDLNLNTPLRNALEEMGIQKPTPIQEQAFAPVMSGRDVVGIAQTGTGKTYAYLLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  + +   PR LI+ PTREL  QV +  +K  K  NL VA + GG+    Q ++L+
Sbjct: 61  RMLKFSKQK--NPRILIMVPTRELVVQVVEEIDKLAKYINLRVAGIYGGVNINTQQQELQ 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+++ TP R+ D   R  + + +I+  VIDE D MLD+GF   + NI  L+P  RQ+
Sbjct: 119 RGLDIVVATPRRLYDLVLRRAVQLKSIQKFVIDEVDVMLDLGFKFQVNNIIELLPPNRQS 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSATMT+ ++++       P++I +    +  + I+          +K   L      
Sbjct: 179 IMFSATMTETVEEMINENFNAPEKISIAVSGTPLDNIQQQGYILPNFNTKANLLKHLFSD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   K  I   +++          +K    V  +H    Q  R+K + +F EG  ++M+
Sbjct: 239 KETFKKILIFISDKRIADRLFDSLGQKFPGEVSLVHTGKSQNYRLKNVEDFDEGLTRIMI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD+  V HV NFD PN  ENY+HRIGRTGRA + G +     +++++++ AI
Sbjct: 299 ATDVMARGLDLDAVSHVINFDTPNYPENYMHRIGRTGRAEKKGNSILFTTEKELEYLKAI 358

Query: 361 EKLIEKKVDWLNG----DLSSLNPPLEKIDIAQHNHARK 395
           E+L++ +V  +       +S+   P E+    + N+  K
Sbjct: 359 EELMKMEVPKIEIPAAVKISNELIPEERPRAIEINNPSK 397


>gi|254166522|ref|ZP_04873376.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|289596178|ref|YP_003482874.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|197624132|gb|EDY36693.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|289533965|gb|ADD08312.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
          Length = 451

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 136/386 (35%), Positives = 217/386 (56%), Gaps = 13/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ +S     A+ +  +V+PT +Q K IPL ++  D+   ++TG+GKT +F++P+ 
Sbjct: 4   LKFEDMSISKGTKNALKEHNFVEPTEVQEKAIPLAIKGRDLIVQSKTGSGKTLAFLIPIF 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  G   +      +L PTRELA QV       GK +     ++ GG P E Q   L+
Sbjct: 64  ENLNSGLEAI------VLVPTRELAQQVERVARSIGKAHGKRTVVIYGGAPMERQIAGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             + V I TPGR++D   RG L +N I   V+DEADRMLDMGFI  I+ I    P  +Q 
Sbjct: 118 GASMV-IGTPGRVMDLMRRGYLNLNGIRFFVLDEADRMLDMGFIDDIKWILQKTPKDKQM 176

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  E+  ++  +++NP++I ++    TAE +   +V           + +    
Sbjct: 177 MLFSATMPPEIISLARRYMKNPEKIILSEDEITAENVAQYYVEVGEINK----IAKLSSL 232

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IFCN ++   N+   L+K GF   A+HG++ Q +R + +  FK+G I ++V
Sbjct: 233 LISERGKYLIFCNTRRKTKNIAEILQKYGFKAFALHGDMRQATRTRTMDAFKQGKIDILV 292

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D+AARG+D+  + HV N+DVP   ++Y+HRIGRTGR   HGKA T V +ED ++   I
Sbjct: 293 STDVAARGIDVHGITHVVNYDVPLYPKDYVHRIGRTGRMDAHGKAITFVTREDKEYFRRI 352

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKID 386
           E  I K++  +  ++ ++    E+ D
Sbjct: 353 EDFIGKRIPKM--EIKNVGKIKERTD 376


>gi|153834507|ref|ZP_01987174.1| RhlE [Vibrio harveyi HY01]
 gi|148869093|gb|EDL68132.1| RhlE [Vibrio harveyi HY01]
          Length = 411

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 151/414 (36%), Positives = 236/414 (57%), Gaps = 6/414 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV   GY KPT IQ K IP+VL+  ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSAPITDAVKALGYEKPTSIQQKAIPIVLRGRNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G   R +  R +IL PTRELA QV  + E YGKN  L    + GG+ +  Q + L
Sbjct: 61  EKLSQGETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVDYAPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR++D + +  +  + +E+LV+DEAD+MLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIVDCMPEDIQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT+++ ++ +++N + +P+ I   + +  + +  +             + L   +
Sbjct: 181 SLLFSATLSNPVRDLAKNAIVDPEEI---SIAKHSASKSNIKQWITTVDKDMKSSLLSHM 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++     ++F   K     L   LEK+G    A H   +QR R +++  FK G IQ +
Sbjct: 238 LNENDWSQVLVFIETKHGAAKLVTQLEKRGIVAEAFHSGRNQRVRQELIEQFKAGEIQYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI ++  V N+D+P  A+ Y+HRIGRTGRAG  G+A +LV+K+D K++  
Sbjct: 298 VATGVAARGIDIDNLPVVINYDLPYPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCM 357

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           IE  +   ++   + G       P+  ++    N  +  +  P++  G  R  K
Sbjct: 358 IESRLGHLLERVEIEGFAPRKPVPISILNYVPKNKRKPQDQRPRRDNGDKRDSK 411


>gi|304310488|ref|YP_003810086.1| ATP-dependent RNA helicase [gamma proteobacterium HdN1]
 gi|301796221|emb|CBL44429.1| ATP-dependent RNA helicase [gamma proteobacterium HdN1]
          Length = 527

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 154/459 (33%), Positives = 248/459 (54%), Gaps = 13/459 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M+F+DLGL+ ++V  +   GY + TP+Q   IP  LQ  D+   + TG+GKTA+F+LP +
Sbjct: 1   MNFSDLGLNTRLVSTLQALGYEQATPVQQLAIPAALQGGDLLASSHTGSGKTAAFLLPCL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKK 118
             +++  + +    R L+L PTRELA Q+      YG+    L  A L+GG  +  Q K 
Sbjct: 61  QRMIDDPKPKSGAARMLVLTPTRELALQIEKAARNYGREVRRLNTACLVGGSSYFMQLKD 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R  ++LI TPGR+LDH  RG++ ++ IE LV+DEADRMLDMGF   I+ I +     R
Sbjct: 121 LGRQPEILIATPGRLLDHIERGRVDLSQIETLVLDEADRMLDMGFSDDIEAIVAETNPER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATM   +  ++    ++P+RIE+         IE   +       K    L   
Sbjct: 181 QTMLFSATMEGVVGALARKLTRDPQRIEIEKKPEQQAKIEQKLMMADDLAHKNR--LLGA 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   +++   ++F   K+   +L ++L  +GFSV A+HG++ Q+ R + L+  ++G I +
Sbjct: 239 LLRDESLNQAVVFTATKRAAEDLSNTLRDEGFSVEALHGDMHQKLRNRTLTKLRQGRIGI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + HV N+D P + E+Y+HRIGRTGRAGR G A TL   ++ + I 
Sbjct: 299 LVATDVAARGIDVVGISHVINYDPPRQVEDYVHRIGRTGRAGRTGTAVTLAEFKERRIIR 358

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IE+   + ++       ++ P +E     +    RK  P  +   G+     + +++  
Sbjct: 359 DIERFTGQPIEV------TVIPGMEP--TRREERPRKEGPKRKYGKGYGASNGSGNARPK 410

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
               +     S  +    ++ A+   F G  P F     
Sbjct: 411 SGGYRSQRDSSDGRSRGGDDRAEGRRF-GEGPRFSERPR 448


>gi|326523907|dbj|BAJ96964.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 414

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 128/377 (33%), Positives = 196/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 42  SFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G       + LIL PTRELA Q+       G    + V   +GG       + L  
Sbjct: 102 QLDYGLVE---CQALILAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS 158

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 159 GVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVG 218

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 219 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDL--YE 276

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 277 TLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V +ED + +  I+
Sbjct: 337 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTREDERMLFDIQ 396

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     ++ L  +++ L
Sbjct: 397 KFYNVVIEELPANVADL 413


>gi|327306565|ref|XP_003237974.1| ATP-dependent RNA helicase DHH1 [Trichophyton rubrum CBS 118892]
 gi|326460972|gb|EGD86425.1| ATP-dependent RNA helicase DHH1 [Trichophyton rubrum CBS 118892]
          Length = 508

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 126/435 (28%), Positives = 200/435 (45%), Gaps = 29/435 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +   ++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFEDFYIKRDLMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                   ++   + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 107 ERTNP---KIAKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLN 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   ++     V+DEAD++L   F P I+ + +  P  RQ 
Sbjct: 164 DTVHIIVGTPGRILDLASKGVADLSECTTFVMDEADKLLSPEFTPVIEQLLTFHPKDRQV 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F     R           T+            ++       L 
Sbjct: 224 MLFSATFPIIVKT----FKDKHMRNPYEINLMDELTLRGITQYYAFVEERQKVHCLNTLF 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRYNLYKI 399

Query: 361 EKLIEKKVDWLNGDLSSL----------------NPPLEKIDIAQHNHARKNNPIPQKST 404
           E+ +  ++  +   +                    P  E+   +  +  RK    P    
Sbjct: 400 EQELGTEIQPIPPSIDKKLYVYETPNTIPRPISNKPSEEQKPASAESQPRKQTTNPSNGH 459

Query: 405 GFDRRKKNYSSQKSH 419
           G       YSS + H
Sbjct: 460 G------QYSSNRGH 468


>gi|310814605|ref|YP_003962569.1| DEAD/DEAH box helicase domain protein [Ketogulonicigenium vulgare
           Y25]
 gi|308753340|gb|ADO41269.1| DEAD/DEAH box helicase domain protein [Ketogulonicigenium vulgare
           Y25]
          Length = 426

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 149/375 (39%), Positives = 232/375 (61%), Gaps = 5/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  LGLSP++  A+ + G  +PTPIQ + IP  +   DV G+AQTGTGKTA+F LPM+
Sbjct: 1   MDFDMLGLSPRLTKALAELGITEPTPIQAQAIPHAMNGRDVLGLAQTGTGKTAAFGLPMI 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L K   R +       +L PTRELA Q+A+N   Y K+ +L   ++ GG     Q ++
Sbjct: 61  DALIKDSRRAQAKGARALVLAPTRELAKQIAENLAAYTKDSHLKTVVVTGGAGIGGQIQR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +ERG  +L+ TPGR++D  +R  + ++  E LV+DEAD+MLD+GFI  ++ I  L+P  R
Sbjct: 121 MERGTAILVATPGRLIDLLDRKAIDLSQTEFLVLDEADQMLDLGFIHALRRIAPLLPANR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATM  ++++++ +FL NP R++VN      +       + +   S+    L   
Sbjct: 181 QTMLFSATMPKQMEELAASFLSNPIRVQVNP---PGQAATKITQSVHFVASRAKTDLLIE 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L      +  ++F   K  +  L   LE  G++V AIHGN  Q  R + L +F+ GT+++
Sbjct: 238 LLDAHRDELALVFGRTKHGMEKLAKQLENAGYAVAAIHGNKSQGQRDRALRDFRAGTLRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIPDV +V+N+++PN  +NY+HRIGRT RAG+ G+A    A +++  + 
Sbjct: 298 LVATDVAARGLDIPDVRYVYNYELPNVPDNYVHRIGRTARAGKDGQAVAFCAPDEMGDLR 357

Query: 359 AIEKLIEKKVDWLNG 373
            I+K+++  +   +G
Sbjct: 358 DIQKVMKTTIPVASG 372


>gi|322420162|ref|YP_004199385.1| DEAD/DEAH box helicase domain-containing protein [Geobacter sp.
           M18]
 gi|320126549|gb|ADW14109.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18]
          Length = 477

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 143/447 (31%), Positives = 226/447 (50%), Gaps = 16/447 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   V+  + + G+   TPIQ K +PL L   DV G AQTGTGKTA+F++ + 
Sbjct: 1   MKFTELQLPDLVLKGIEETGFTDCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIF 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           T    ++       PR LIL PTREL  Q+  + +  GK     +  + GG+ +  Q   
Sbjct: 61  TRLLNQQKTGAEHHPRALILAPTRELVVQIEKDAQTLGKYTGFNIQAIYGGVDYMKQRDA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ GAD++I TPGR++D+  +    + ++E LVIDEADRM DMGFI  ++ I   +P   
Sbjct: 121 LKAGADIVIGTPGRLIDYLKQKVYSLKDVEALVIDEADRMFDMGFIADLRFILRRLPTYD 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +      + T   + +   +       +V+       T E      Y    K+   L   
Sbjct: 181 KRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPEQM-TAERVEQVLYHASRKEKFPLLLG 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +  M+  +IF N K+    L   L    F    I G+++QR RMKILS+FK G + +
Sbjct: 240 LLRKMGMERTMIFVNTKREAEYLQDRLNANEFPCKVISGDVEQRKRMKILSDFKAGILPI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+D+A+RG+ I  V HV N+D+P   E+Y+HRIGRT RAG  G A +L  ++   +I+
Sbjct: 300 MIATDVASRGIHIEGVSHVINYDLPQDCEDYVHRIGRTARAGAEGMAISLADEDGAFYIE 359

Query: 359 AIEKLIEKKV--DWLNGDL------SSLNPPLEKIDIAQHNHAR---KNNPIPQKSTGFD 407
           AI+  I++K+  +W   D+       +  PP    D       +   +     ++    +
Sbjct: 360 AIQDFIKQKIPTEWAEDDMFVHDYKRTARPPRRSDDKPGGRGGKPAGRGAKPGEREKPRE 419

Query: 408 RRKKNYSSQKSHI--PLKESEKISKLQ 432
           RR K+   +K     P   + ++ ++Q
Sbjct: 420 RRGKSGGEKKKEAGEPATAAAEVREVQ 446


>gi|134057099|emb|CAK44387.1| unnamed protein product [Aspergillus niger]
          Length = 491

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 117/373 (31%), Positives = 198/373 (53%), Gaps = 5/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L 
Sbjct: 26  TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++      +    L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 86  VIDTVVRESQA---LVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDY 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 143 GQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P R+ V     T E I+  F+A   +  K   L       
Sbjct: 203 VVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDL--YD 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  +++++
Sbjct: 261 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIS 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V  +D++ +  IE
Sbjct: 321 TDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIE 380

Query: 362 KLIEKKVDWLNGD 374
                ++D +  +
Sbjct: 381 LYYSTQIDEMPMN 393


>gi|119195455|ref|XP_001248331.1| conserved hypothetical protein [Coccidioides immitis RS]
 gi|118582181|sp|Q1E5R1|DHH1_COCIM RecName: Full=ATP-dependent RNA helicase DHH1
          Length = 512

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 129/453 (28%), Positives = 211/453 (46%), Gaps = 11/453 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                   ++   + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 107 ERT---NPKISKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLS 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 164 DTVHIIVGTPGRILDLASKGVADLSECTTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F     R           T+            ++       L 
Sbjct: 224 MLFSATFPMIVKS----FKDKHMRNPYEINLMDELTLRGITQYYAFVEERQKVHCLNTLF 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q++R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQNRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRYNLYKI 399

Query: 361 EKLIEKKVDWLNGDLSS---LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           E+ +  ++  +   +     +    E I     N + + NP  Q +   D +    +   
Sbjct: 400 EQELGTEIQPIPPSIDKKLYVYDTPETIPRPIANASTERNPPAQLAQSSDNQNHRQAHHI 459

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRGNMP 450
           S    +++       +        + G RG  P
Sbjct: 460 SGGHGQQTANRGHSLRGSYRG-GRAQGHRGGHP 491


>gi|59800607|ref|YP_207319.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|194097783|ref|YP_002000826.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998282|ref|ZP_04718206.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae 35/02]
 gi|240013464|ref|ZP_04720377.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI18]
 gi|240015903|ref|ZP_04722443.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA6140]
 gi|240080042|ref|ZP_04724585.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA19]
 gi|240112252|ref|ZP_04726742.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
 gi|240114997|ref|ZP_04729059.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
 gi|240117282|ref|ZP_04731344.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
 gi|240120536|ref|ZP_04733498.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID24-1]
 gi|240122833|ref|ZP_04735789.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
 gi|240125029|ref|ZP_04737915.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           SK-92-679]
 gi|240127543|ref|ZP_04740204.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|254493059|ref|ZP_05106230.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae 1291]
 gi|260441187|ref|ZP_05795003.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI2]
 gi|268594137|ref|ZP_06128304.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268596188|ref|ZP_06130355.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268598313|ref|ZP_06132480.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
 gi|268600665|ref|ZP_06134832.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
 gi|268602977|ref|ZP_06137144.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
 gi|268681449|ref|ZP_06148311.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
 gi|268683617|ref|ZP_06150479.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-92-679]
 gi|268685920|ref|ZP_06152782.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-93-1035]
 gi|291044521|ref|ZP_06570230.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293397657|ref|ZP_06641863.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
 gi|59717502|gb|AAW88907.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|193933073|gb|ACF28897.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512099|gb|EEH61444.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae 1291]
 gi|268547526|gb|EEZ42944.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268549976|gb|EEZ44995.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268582444|gb|EEZ47120.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
 gi|268584796|gb|EEZ49472.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
 gi|268587108|gb|EEZ51784.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
 gi|268621733|gb|EEZ54133.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
 gi|268623901|gb|EEZ56301.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-92-679]
 gi|268626204|gb|EEZ58604.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-93-1035]
 gi|291011415|gb|EFE03411.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291611603|gb|EFF40672.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
 gi|317163562|gb|ADV07103.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 457

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 159/447 (35%), Positives = 251/447 (56%), Gaps = 29/447 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N  EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKAEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +      +
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNL---LE 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 242 RLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+YIHRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYIHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           +AI++L   K+             +E+I+  +     +    P+K+   + R++N     
Sbjct: 362 EAIKELTGNKL------------LIERIEGFEPRWWEQEGSKPEKTETSEPRQRNRY--- 406

Query: 418 SHIPLKESEKISKLQQDIQENDADSLG 444
                 ES +  + +    E  A+  G
Sbjct: 407 ------ESARAQREKNTRPETTANDAG 427


>gi|319788058|ref|YP_004147533.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466570|gb|ADV28302.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 463

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 153/387 (39%), Positives = 232/387 (59%), Gaps = 10/387 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PTPIQ + IPL L  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTPIQQQAIPLALAGHDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L     +V    R PR L+L PTRELA QV D+   Y K   +  A++ GG+    Q 
Sbjct: 61  QYLGTEPQKVGPGPRKPRALVLTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L RG D++I  PGR++DH  R  + ++ IE+L++DEADRMLDMGF+P I+ I + +P 
Sbjct: 121 DSLRRGVDMVIACPGRLIDHIERRSIDLSGIEVLILDEADRMLDMGFLPSIKRILAKLPK 180

Query: 177 TRQTL-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +   LFSAT  + +++++  F++NP+ ++V   ++ AETI H          ++  L 
Sbjct: 181 QNRQTLLFSATFPESIKQLAMEFMRNPREVQVTPQNTVAETIAHRVHPVDTARKRELLLH 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                ++      ++F   K     L   LEK G    AIHGN  Q  R++ L +FK G 
Sbjct: 241 LLGQDAR---VQTLVFAKTKHGSDKLATHLEKAGIQAAAIHGNKSQGQRLRALGDFKSGK 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G +G+A +LV++ED K
Sbjct: 298 VKVLVATDIAARGIDIDQLPRVINYDLPMVAEDYVHRIGRTGRNGANGEALSLVSQEDAK 357

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPL 382
           ++  I +++ + ++    DL    P +
Sbjct: 358 YLRQIVRMLGRDMEI--RDLPGFEPQV 382


>gi|308186129|ref|YP_003930260.1| ATP-dependent RNA helicase rhlE [Pantoea vagans C9-1]
 gi|308056639|gb|ADO08811.1| Putative ATP-dependent RNA helicase rhlE [Pantoea vagans C9-1]
          Length = 456

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 161/390 (41%), Positives = 234/390 (60%), Gaps = 6/390 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                        R  R LIL PTRELAAQV +N   Y K  +L   ++ GG+    Q  
Sbjct: 61  QKLSATATPIRGRRPVRALILTPTRELAAQVGENVSDYSKYLSLRSLVVFGGVSINPQMV 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD   +  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLAQQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++E  L NP+ IEV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDEIKGLAEKLLTNPEMIEVARRNTASEQV---AQQVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +   +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK G I+
Sbjct: 238 QLIGEGNWQQVLVFTRTKHGANHLAEQLGKDGITAAAIHGNKSQGARTRALADFKSGGIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN AE+Y+HRIGRTGRA   G A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGVALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
             IE+L+++++  L  +    +P ++   I
Sbjct: 358 RDIERLLKREIPRLAIEGYEPDPSIKAEPI 387


>gi|88707113|ref|ZP_01104807.1| ATP-dependent RNA helicase [Congregibacter litoralis KT71]
 gi|88698625|gb|EAQ95750.1| ATP-dependent RNA helicase [Congregibacter litoralis KT71]
          Length = 423

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 171/424 (40%), Positives = 247/424 (58%), Gaps = 6/424 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGLSP +V A  D GY +PTPIQ K +PLVL   DV   AQTGTGKTA+FVLP+ 
Sbjct: 1   MTFDALGLSPNLVKAANDRGYSQPTPIQTKAVPLVLDGQDVLAAAQTGTGKTAAFVLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   G AR R  RTL+L PTRELA+QV D+   YG+  +L  A++ GG+  E Q + L
Sbjct: 61  QRLAFVGGARGRQVRTLVLTPTRELASQVHDSVLTYGRYLDLRSAVVFGGVRAEPQIEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G DVL+ TPGR+LD   +G +  + +E+LV+DEADRMLDMGFI  ++ I  ++P  RQ
Sbjct: 121 EPGVDVLVATPGRLLDLAQQGYVDFSALEVLVLDEADRMLDMGFIHDMRRIIEMLPINRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++  +L  P  ++V   +ST E +E    A   ++     +     
Sbjct: 181 TLMFSATFSQEIRSLAARYLVEPVSVDVAPANSTTELVEQKAYAVDPEHKSDLLMHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      ++FC  K     L  +L   GF+   IHGN  Q +R + L  FK+G +QL+
Sbjct: 238 FREGEWGQALVFCRTKHGANQLSKALLNAGFAAAPIHGNKSQNARQRALDAFKKGDLQLL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+DLAARGLDI  +  V NFD+P+  ++Y+HRIGRTGRAG  G++ +LV+ +D   + A
Sbjct: 298 IATDLAARGLDIDQLPEVVNFDLPSVPQDYVHRIGRTGRAGATGRSHSLVSADDEPLLRA 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE LI +++  + ++G   +  PP       + +  RK      +     RR +      
Sbjct: 358 IEVLIRREIPMEHVSGFEPTDRPPSSHNTGDREDRGRKTPGSAPRDAAVARRSREPGGSS 417

Query: 418 SHIP 421
           S   
Sbjct: 418 SWKK 421


>gi|317485703|ref|ZP_07944574.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
 gi|316923068|gb|EFV44283.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
          Length = 594

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 143/379 (37%), Positives = 217/379 (57%), Gaps = 10/379 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS +++ AV D G+ +P+PIQ+  IP +L   D  G AQTGTGKTA+F LP+L 
Sbjct: 4   SFTELGLSQELLKAVEDLGFEEPSPIQVLAIPALLTGKDAVGQAQTGTGKTAAFGLPILE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            +  G    +  + L+L PTRELA QV++   K   +      L I  G P E Q + L 
Sbjct: 64  KIASG----KSVQALVLCPTRELAIQVSEELSKLAVHKRGVSVLPIYGGQPIERQLRALA 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA V++ TPGR++DH  RG L +N   I+V+DEAD MLDMGF   I+ I    P   Q 
Sbjct: 120 KGAQVVVGTPGRVIDHLQRGTLRLNEARIVVLDEADEMLDMGFREDIELILEQSPADCQR 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++++S+ FL+ P+ + +     T   IE  +                   
Sbjct: 180 VLFSATMPQPIRELSKRFLREPEMLTIAHKMLTVPAIEQVYYEVRPYQKMDALCRVL--- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  ++FC  K++V  +   L+++G+    +HG+++Q  R +++S F+   I+++V
Sbjct: 237 DSQGFRKALVFCATKRSVDEITVHLQQRGYQADGLHGDMNQTQRDRVMSRFRTDGIEILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV  V N+D+P+  E Y+HRIGRTGRAGR GKAFT V   +   I  I
Sbjct: 297 ATDVAARGIDVDDVDAVINYDIPHDVEGYVHRIGRTGRAGREGKAFTFVTVREQYKIREI 356

Query: 361 EKLIEKKVDWLNGDLSSLN 379
            +  + ++    G L +L 
Sbjct: 357 IRYTKARIQ--PGQLPTLR 373


>gi|153839129|ref|ZP_01991796.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|260902834|ref|ZP_05911229.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|149747384|gb|EDM58352.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|308107831|gb|EFO45371.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
          Length = 430

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 154/408 (37%), Positives = 236/408 (57%), Gaps = 15/408 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P+VV A+ + GY K TPIQ K IP+  + HD+   AQTGTGKTA+F LPM+
Sbjct: 1   MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMI 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L               IL PTRELA Q+ADN + Y K  +L+V  + GG    +Q   
Sbjct: 61  QQLLDSGRTASRKTARALILAPTRELAEQIADNIKAYTKYTDLSVVAVFGGRKMSSQISA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H  +G + + N+E LV DEADR+LDMGFI  ++ I   V    
Sbjct: 121 LENGVDILVATPGRLEEHIEQGNVSVANLEFLVFDEADRILDMGFIHAVRKIMLDVDTDP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L  ++++ L+ PKRIEV   ++TA T+ H       +   +       
Sbjct: 181 QIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAHTVAHVLYPVDQERKTELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F N K+   ++   L+  G      HG+  Q +R + L  FK G +++
Sbjct: 239 -IGRKNWQQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V +++   + 
Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNRDEELTVV 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPP-----LEKIDIA---QHNHARKNNP 398
            +E LI++++  +  +L+   P      +EK++     ++   R+NNP
Sbjct: 358 QVENLIQQRIRRI--ELAGYEPKQRESYIEKLNSKPAFKNRQGRRNNP 403


>gi|255261539|ref|ZP_05340881.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
 gi|255103874|gb|EET46548.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
          Length = 446

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 158/377 (41%), Positives = 228/377 (60%), Gaps = 5/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  LGL P++V  + D G   PTPIQ + IP  +   DV G+AQTGTGKTA+F LPM+
Sbjct: 1   MDFDMLGLMPRLVKKLADQGITDPTPIQAQAIPHAMNGRDVMGLAQTGTGKTAAFGLPMI 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +   +         IL PTRELA Q++DN   Y +  +L VAL++GG    AQ K+
Sbjct: 61  DALMRAGVKPEPKTVRGLILAPTRELAKQISDNLRDYTQGSHLKVALVVGGAGIVAQMKR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG D+L+ TPGR++D  +R  L ++    LV+DEAD+MLD+GFI  ++ I  L+   R
Sbjct: 121 LERGVDLLVATPGRLIDLLDRKALSLSETHYLVLDEADQMLDLGFIHALRKIAPLLADDR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATM  ++ +++  +L++P R+EVN P   A+ IE            K  +    
Sbjct: 181 QTMLFSATMPKQMNELAAAYLRSPVRVEVNPPGKAADKIEQSLHYIAKSEKPKLLIELL- 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  I+F   K     L  +LEK GF   +IHGN  Q  R + +  F+EG + +
Sbjct: 240 --GKHKGERAIVFGRTKHGCEKLYKTLEKAGFDAVSIHGNKSQGQRERAIVAFREGKVTV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIPDV HV+NFD+PN  ENY+HRIGRT RAG  G A    A +++  + 
Sbjct: 298 LVATDVAARGLDIPDVKHVYNFDLPNVPENYVHRIGRTARAGAEGMAIAFCAPDEMSELR 357

Query: 359 AIEKLIEKKVDWLNGDL 375
           +I+K+++  +   +G +
Sbjct: 358 SIQKVMKMDIPVASGRV 374


>gi|156935688|ref|YP_001439604.1| ATP-dependent RNA helicase DeaD [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156533942|gb|ABU78768.1| hypothetical protein ESA_03554 [Cronobacter sakazakii ATCC BAA-894]
          Length = 635

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 133/378 (35%), Positives = 225/378 (59%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFTDLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLH 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            +++    +R P+ L+L PTRELA QVA+    + K+ +    + +  G  ++ Q + L 
Sbjct: 67  NIDET---LRAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++N++ LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVETIMAQIPAEHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   + + Y     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|149910407|ref|ZP_01899049.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
 gi|149806555|gb|EDM66524.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
          Length = 460

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 136/471 (28%), Positives = 224/471 (47%), Gaps = 25/471 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D G+ P+++ ++   G+ + T +Q   IPL+L   D+   +QTG+GKT ++ LP+L
Sbjct: 1   MRFQDFGIDPRLISSIEHLGFEQATEVQEAAIPLILGGCDIMATSQTGSGKTIAYGLPIL 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + ++ R   R  R +IL PTRELA QV  N +  G + +  + L+IG   F+ Q K L
Sbjct: 61  QRMLKQRRFEHRAVRAVILAPTRELAIQVHANMKHLGMSLDYQIQLIIGRESFQHQEKLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  +VLI TPGR+LDH     + + ++E LV+DEADRMLDMGF   +  I++  P  ++
Sbjct: 121 RKNPEVLIATPGRLLDHIREKSISLEHLEFLVLDEADRMLDMGFRDDVSAISNSAPNVKR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +  +   + +   +           +    S  +  +      ++            L
Sbjct: 181 QTMLFSATLEHVDVANICNQVLRAPERIEINRSNDQHEKIEQRLFFSDNLTHKEEQLVHL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  +IF   K +   L   L        +IHG++ Q  R + L +F+ G + ++
Sbjct: 241 VKSEDYRQLLIFTATKLDTERLAKLLMDNDIDATSIHGDMLQNQRKRTLEDFRRGRVGVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + HV NFD+P   E++IHR GRTGRAG  G A +LV+ +D      
Sbjct: 301 VATDVAARGLDIRTLSHVINFDLPINPEDFIHRTGRTGRAGATGIAISLVSPKDWTSFGK 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           I+  ++ K+       + L     K    +   A+K  P+  K             + + 
Sbjct: 361 IQSYLKVKLP-----CTMLEGFEAKFKGFKPKPAKKRLPVSNK------------GRPAK 403

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMP-------AFMLPKNRGKLND 463
           +  K  +   K +Q+         G R +M        A M  K R ++ D
Sbjct: 404 LARKGDKNAPKQKQNTAPKQDKKQGMRDSMASAVDGGFAPMKRKPRAEIID 454


>gi|116074911|ref|ZP_01472172.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9916]
 gi|116068133|gb|EAU73886.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9916]
          Length = 449

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 154/371 (41%), Positives = 223/371 (60%), Gaps = 4/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGLS  ++ A+ + GY  P+PIQ + IP VL   D+   AQTGTGKTA F LPML 
Sbjct: 16  TFDDLGLSAPLLQALREKGYSTPSPIQEQAIPAVLSGRDLMAAAQTGTGKTAGFTLPMLE 75

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L  G    R   R L+L PTRELAAQV DN   Y ++  L   ++ GG+    Q ++L+
Sbjct: 76  TLSHGARPGRGQIRALVLTPTRELAAQVLDNARDYSRHLRLRSEVVFGGVKINPQIQRLQ 135

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+LD   +G +    +E LV+DEADRMLDMGFI  I+ + S +P  RQ 
Sbjct: 136 QGVDLLVATPGRLLDLHQQGAVRFERVEFLVLDEADRMLDMGFIHDIRRVLSRLPERRQN 195

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT +  ++K++   L +P +I++  P+ TA T++           K+   L   L 
Sbjct: 196 LLFSATFSPSIRKLATGLLNDPLQIQITPPNQTARTVQQVVHPCDM---KRKPDLLSHLI 252

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  ++F   K     +   L  +G    AIHGN  Q +R + L  FK+G+++++V
Sbjct: 253 RSNDWQQVLVFSRTKHGANRVAEKLTNEGLVAAAIHGNKSQGARTRALQGFKDGSVRVLV 312

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + HV N D+PN AE+Y+HRIGRTGRAG  G A +LVA E+   + AI
Sbjct: 313 ATDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRTGRAGECGHAISLVAAEEALLLKAI 372

Query: 361 EKLIEKKVDWL 371
           E+   + ++ +
Sbjct: 373 ERTTRESLEKV 383


>gi|332523459|ref|ZP_08399711.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314723|gb|EGJ27708.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 538

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 143/373 (38%), Positives = 224/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +        + + L++ PTRELA Q  +   ++G++  + V  + GG   + Q K L+
Sbjct: 61  NKIRTDE---NIIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGASIDKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L ++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F++NP+ +++     T   +E  +V    Q             
Sbjct: 178 LLFSATMPAPIKQIGVKFMKNPEHVQIKNKELTNVNVEQYYVRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   + ++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI +V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISNVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKQMKPLKP 367


>gi|313890723|ref|ZP_07824348.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120824|gb|EFR43938.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 538

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 143/373 (38%), Positives = 224/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTELNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +        + + L++ PTRELA Q  +   ++G++  + V  + GG   + Q K L+
Sbjct: 61  NKIRTDE---NIIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGASIDKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L ++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F++NP+ +++     T   +E  +V    Q             
Sbjct: 178 LLFSATMPAPIKQIGVKFMKNPEHVQIKNKELTNVNVEQYYVRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   + ++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI +V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISNVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKQMKPLKP 367


>gi|134095351|ref|YP_001100426.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
 gi|133739254|emb|CAL62303.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
          Length = 449

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 173/433 (39%), Positives = 250/433 (57%), Gaps = 21/433 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL+  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFTDLGLADGIVRAVTEHGYSIPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TI------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                        +  R  R L+L PTRELAAQV ++   Y K  NL  A++ GG+    
Sbjct: 61  HRLATSGTPHASASAQRPIRALVLTPTRELAAQVEESVRTYSKYLNLNSAVIFGGVGINP 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q K L+ G D+L+ TPGR+LDH  +G + ++ +EILV+DEADRMLDMGFI  I+ + +++
Sbjct: 121 QIKLLKHGVDILVATPGRLLDHMQQGTVNLSKVEILVLDEADRMLDMGFIKDIRRVLAVL 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT ++E++ +++  L +P  IEV   +ST E IE                
Sbjct: 181 PKNRQNLLFSATFSNEIKALADGLLNSPAMIEVARRNSTVEVIEQKIHPVDRDKK---HP 237

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   L   +     ++F   K     L   LEK G S  AIHGN  Q +R + LS FK+G
Sbjct: 238 MLAHLIKTNNWSQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTRALSEFKDG 297

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           ++Q++VA+D+AARG+DI  + HV N+D+PN  E+Y+HRIGRTGRAG  G+A +LV  +++
Sbjct: 298 SLQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEL 357

Query: 355 KHIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             +  IEKLI++K+  + + G    LN   + I        R++N  P +     + + N
Sbjct: 358 DMLKDIEKLIKRKLPSEVIVGFEPDLNAKPQPIQ-------RRSNDAPGRR---PQGRGN 407

Query: 413 YSSQKSHIPLKES 425
             ++ +  P  + 
Sbjct: 408 APAKSAKAPGAKP 420


>gi|91216282|ref|ZP_01253249.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
 gi|91185420|gb|EAS71796.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
          Length = 423

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 174/426 (40%), Positives = 244/426 (57%), Gaps = 6/426 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +V AV   GY  PTPIQ K+IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MLFKSLGLSEALVKAVSSQGYDTPTPIQEKSIPAVLEGKDVLASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +       P    IL PTRELAAQV  + + YGK  +L   ++ GG+  ++Q   L
Sbjct: 61  QLLSQTPPLRNRPVRALILTPTRELAAQVHQSVKDYGKFVDLRSTVIFGGVNQKSQVSTL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D  N+G L +  +EILV+DEADRMLDMGF+  I+ I  L+P  RQ
Sbjct: 121 RNGVDVLVATPGRLIDLNNQGLLSLAKVEILVLDEADRMLDMGFLRDIKKIMKLIPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT + E++ ++  FL+NP  +E    ++T E IE        +      +     
Sbjct: 181 TLLFSATFSREIRSLASEFLKNPVSVESTPENTTVEAIEQQVYRVAKEKKTDLLIKL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+   +  ++F   K     L   LE       AIHGN  Q +R K L+ FK G+++++
Sbjct: 238 ISEGNWEQVLVFSRTKHGANKLAKKLEAAKIGAAAIHGNKSQGARTKALAGFKSGSVKVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDIP + +V NF++PN +E+Y+HRIGRTGRAG  G A +LV+ ++   +  
Sbjct: 298 VATDIASRGLDIPLLPYVVNFELPNVSEDYVHRIGRTGRAGASGLAVSLVSADETVFLKD 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IEKLI  K+  D + G     N   +  +  Q     ++N    +S    R K   S Q 
Sbjct: 358 IEKLIGDKIPMDIIEGFEPDPNASTKPFNPQQRGRKPQSNSRSGQSNRPQREKSGSSRQS 417

Query: 418 SHIPLK 423
           S+ P +
Sbjct: 418 SNKPRR 423


>gi|315619798|gb|EFV00317.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 3431]
          Length = 449

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 156/386 (40%), Positives = 231/386 (59%), Gaps = 8/386 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI--- 62
           +GLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L     
Sbjct: 1   MGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLIT 60

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  KL  G
Sbjct: 61  RQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGG 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  RQ LL
Sbjct: 121 VDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L   +  +
Sbjct: 181 FSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLSHMIGK 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+++VA+
Sbjct: 238 GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +  IEK
Sbjct: 298 DIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEK 357

Query: 363 LIEKKVDW--LNGDLSSLNPPLEKID 386
           L++K++    + G     +   E I 
Sbjct: 358 LLKKEIPRIAIPGYEPDPSIKAEPIQ 383


>gi|309786547|ref|ZP_07681170.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
           1617]
 gi|308925610|gb|EFP71094.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
           1617]
          Length = 449

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 156/386 (40%), Positives = 231/386 (59%), Gaps = 8/386 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI--- 62
           +GLSP ++ AV + GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L     
Sbjct: 1   MGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLIT 60

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +      R  R LIL PTRELAAQ+ +N   Y K  N+   ++ GG+    Q  KL  G
Sbjct: 61  RQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGG 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVL+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P  RQ LL
Sbjct: 121 VDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT +D+++ ++E  L NP  IEV   ++ ++ +       +    K+   L   +  +
Sbjct: 181 FSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV---TQHVHFVDKKRKRELLSHMIGK 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  ++F   K    +L   L K G    AIHGN  Q +R + L++FK G I+++VA+
Sbjct: 238 GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI ++ HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K +  IEK
Sbjct: 298 DIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEK 357

Query: 363 LIEKKVDW--LNGDLSSLNPPLEKID 386
           L++K++    + G     +   E I 
Sbjct: 358 LLKKEIPRIAIPGYEPDPSIKAEPIQ 383


>gi|208779079|ref|ZP_03246425.1| conserved hypothetical protein [Francisella novicida FTG]
 gi|254374120|ref|ZP_04989602.1| ATP-dependent RNA helicase [Francisella novicida GA99-3548]
 gi|151571840|gb|EDN37494.1| ATP-dependent RNA helicase [Francisella novicida GA99-3548]
 gi|208744879|gb|EDZ91177.1| conserved hypothetical protein [Francisella novicida FTG]
          Length = 569

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 150/433 (34%), Positives = 241/433 (55%), Gaps = 14/433 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGL+  +V  V+  GY  PTPIQ   IP +L   DV G AQTGTGKTA+F LP++ 
Sbjct: 8   DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++    R R P+ L+L PTRELA QVA+ FE + KN        I  G  + +Q + L+
Sbjct: 68  NMDLAS-RDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ T GR++DH  +G L ++N+  LV+DEAD ML MGFI  ++ + S V    Q 
Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSDECQR 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++  + E +L+NP +I+V   + TA T+   F+                 +
Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETE 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +   IIF   K + + +  +L+  G+ V AI+G++ Q  R  I+  F+     ++V
Sbjct: 247 ETDGV---IIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+  + HV N+D+PN  + Y+HRIGRTGRAGR G + +LV  ++++ +  +
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ--HNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           E+     +  +        P  + +  ++  H  AR  + +  K+   D+ K+  +S + 
Sbjct: 364 ERFTGSPMQEV------FMPSAKDLAQSRVEHFKARIISAL-DKNKSLDKYKEIITSIRD 416

Query: 419 HIPLKESEKISKL 431
            + L   E ++ L
Sbjct: 417 ELQLDSEELLAGL 429


>gi|118497286|ref|YP_898336.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. novicida U112]
 gi|194323589|ref|ZP_03057366.1| conserved hypothetical protein, putative [Francisella tularensis
           subsp. novicida FTE]
 gi|118423192|gb|ABK89582.1| DEAD-box subfamily ATP-dependent helicase [Francisella novicida
           U112]
 gi|194322444|gb|EDX19925.1| conserved hypothetical protein, putative [Francisella tularensis
           subsp. novicida FTE]
          Length = 569

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 150/433 (34%), Positives = 241/433 (55%), Gaps = 14/433 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGL+  +V  V+  GY  PTPIQ   IP +L   DV G AQTGTGKTA+F LP++ 
Sbjct: 8   DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++    R R P+ L+L PTRELA QVA+ FE + KN        I  G  + +Q + L+
Sbjct: 68  NMDLAS-RDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ T GR++DH  +G L ++N+  LV+DEAD ML MGFI  ++ + S V    Q 
Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSDECQR 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++  + E +L+NP +I+V   + TA T+   F+                 +
Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETE 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +   IIF   K + + +  +L+  G+ V AI+G++ Q  R  I+  F+     ++V
Sbjct: 247 ETDGV---IIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+  + HV N+D+PN  + Y+HRIGRTGRAGR G + +LV  ++++ +  +
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ--HNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           E+     +  +        P  + +  ++  H  AR  + +  K+   D+ K+  +S + 
Sbjct: 364 ERFTGSPMQEV------FMPSAKDLAQSRVEHFKARIISAL-DKNKSLDKYKEIITSIRD 416

Query: 419 HIPLKESEKISKL 431
            + L   E ++ L
Sbjct: 417 ELQLDSEELLAGL 429


>gi|85059773|ref|YP_455475.1| ATP-dependent RNA helicase SrmB [Sodalis glossinidius str.
           'morsitans']
 gi|84780293|dbj|BAE75070.1| ATP-dependent RNA helicase [Sodalis glossinidius str. 'morsitans']
          Length = 447

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 135/450 (30%), Positives = 227/450 (50%), Gaps = 16/450 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ A+ D G+ +PT IQ + IP  +   DV G A TGTGKTA+++LP + 
Sbjct: 5   QFSELELHEDLLAAISDKGFERPTAIQAEAIPAAMDGRDVLGSAPTGTGKTAAYLLPVLQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LI+ PTRELA QVA+  ++   + +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRVLIVTPTRELAMQVAEQAKQLAAHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   ++ I +   + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFALDVEQIAAETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT   + ++  +   L +P  I+ +      + I   +        K   L +   
Sbjct: 185 LLFSATLEGNAVKDFAGRLLNDPVEIDASPSRRERKKIVQWYYRADDLTHKTALLCKL-- 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  +   I+F  +++ +  +   L   G   C + G + Q  R + +    +G + ++
Sbjct: 243 LKQPEVSKAIVFVRKRERLHEVVGWLRDSGIPSCYLEGELVQAKRNEAIKRISDGRMNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI D+ HV NFD+P  A+ Y+HRIGRT RAGR G A +LV   D   +  
Sbjct: 303 VATDVAARGLDIEDISHVINFDLPATADVYLHRIGRTARAGRKGCAISLVETHDHLLLGK 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ--- 416
           I + + + +     D         ++       A K +  P K     R++K   ++   
Sbjct: 363 ISRYLNEPLKARTID---------ELRPTTRAPAEKMSGKPSKKVLAKRKEKKEQARTKD 413

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFR 446
           K+ + L++ + I K +      DA ++   
Sbjct: 414 KTKVRLRDKKNIGKRRMPKVVPDAITVTKP 443


>gi|187931511|ref|YP_001891495.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|187712420|gb|ACD30717.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 569

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 149/433 (34%), Positives = 241/433 (55%), Gaps = 14/433 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGL+  ++  V+  GY  PTPIQ   IP +L   DV G AQTGTGKTA+F LP++ 
Sbjct: 8   DFSQLGLNQDIIDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++    R R P+ L+L PTRELA QVA+ FE + KN        I  G  + +Q + L+
Sbjct: 68  NMDLAS-RDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ T GR++DH  +G L ++N+  LV+DEAD ML MGFI  ++ + S V    Q 
Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQCQR 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++  + E +L+NP +I+V   + TA T+   F+                 +
Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETE 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +   IIF   K + + +  +L+  G+ V AI+G++ Q  R  I+  F+     ++V
Sbjct: 247 ETDGV---IIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+  + HV N+D+PN  + Y+HRIGRTGRAGR G + +LV  ++++ +  +
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ--HNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           E+     +  +        P  + +  ++  H  AR  + +  K+   D+ K+  +S + 
Sbjct: 364 ERFTGSPMQEV------FMPSAKDLAQSRVEHFKARIISAL-DKNKSLDKYKEIITSIRD 416

Query: 419 HIPLKESEKISKL 431
            + L   E ++ L
Sbjct: 417 ELQLDSEELLAGL 429


>gi|332704960|ref|ZP_08425046.1| DNA/RNA helicase, Superfamily II [Lyngbya majuscula 3L]
 gi|332356312|gb|EGJ35766.1| DNA/RNA helicase, Superfamily II [Lyngbya majuscula 3L]
          Length = 469

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 140/369 (37%), Positives = 213/369 (57%), Gaps = 5/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGLS   V  +   G+  PT IQ + IP +L  HDV G++QTGTGKTA+F LPML
Sbjct: 3   VSFQSLGLSESCVSQLEKIGFTTPTTIQAQAIPELLNGHDVLGMSQTGTGKTAAFSLPML 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  +  V+    LIL PTRELA QV      + ++  L +  + GG   E Q + L 
Sbjct: 63  DRIDLDKRTVQA---LILTPTRELAQQVNQAIRDFSEDRRLHILTVCGGQSIERQIRMLY 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA +++ TPGR++D  +RG L + N+  +V+DEAD ML MGFI  ++ I    P  RQT
Sbjct: 120 KGAQIVVGTPGRVIDLLDRGDLKLENLSWVVLDEADEMLSMGFIDDVKKILQQTPEERQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM   +Q++   FL++P  ++V    +    IE          SK  A     + 
Sbjct: 180 TCFSATMPRPIQELVSKFLKSPVTVKVQQSKAAPARIEQRVYMVPRGCSKIRA--LHPIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  IIF   +K    L + L+  G SV   HG++ Q  R ++L  F++  ++ +V
Sbjct: 238 ELEDPEASIIFVRTRKAAAELTNQLQAAGHSVDEYHGDLSQSQRERLLYRFRKNQVRWVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV NFD+P++ E+YIHRIGRTGRAG+ G A TL+   + + +  I
Sbjct: 298 ATDIAARGLDVDHLTHVINFDLPDQVESYIHRIGRTGRAGKTGTAITLIQPFERRKLYQI 357

Query: 361 EKLIEKKVD 369
           E+ + ++++
Sbjct: 358 ERKVRQRLE 366


>gi|321313476|ref|YP_004205763.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
 gi|320019750|gb|ADV94736.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
          Length = 479

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 135/424 (31%), Positives = 221/424 (52%), Gaps = 20/424 (4%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M  F +  +S  ++ A+   GY +PT +Q   IP  L+R D+   +QTG+GKTASF +P+
Sbjct: 1   MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +      +   P+ LIL PTRELA QV ++    G+   +    + G   F+ Q  +L
Sbjct: 61  CELANWDENK---PQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAEL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++ + +++ TPGR+LDH  +G L ++ +  LVIDEAD ML+MGFI  ++ I   +P  R 
Sbjct: 118 KQKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERT 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT+  +++K+S  +    ++ E     +   T  +   A      +    L + +
Sbjct: 178 TMLFSATLPQDIEKLSRQY---MQKPEHIEIKAAGLTTRNIEHAVIQVREENKFSLLKDV 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +   + IIFC  K++V  L   L+  G+    IHG + Q  R  +++ FK G  + +
Sbjct: 235 LMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI ++  V N+D+P   E+Y+HR GRTGRAG  GKA + V   + + +  
Sbjct: 295 VATDVAARGIDIENISLVINYDLPVEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLAD 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+ I  ++  +                +Q   ARK      K       KK+ S + + 
Sbjct: 355 IEEYIGFEIQKIEAP-------------SQEEVARKKPEFLAKMNDRPESKKDKSEELNK 401

Query: 420 IPLK 423
             +K
Sbjct: 402 DIMK 405


>gi|289167533|ref|YP_003445802.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase,
           DEAD-box family [Streptococcus mitis B6]
 gi|288907100|emb|CBJ21934.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase,
           DEAD-box family [Streptococcus mitis B6]
          Length = 521

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 144/373 (38%), Positives = 224/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L LS  ++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNKLNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIRT---EEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L + +I  L++DEAD ML+MGF+  I+ I S VP +RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIGTLILDEADEMLNMGFLEDIEAIISRVPESRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++    Q             
Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|160888241|ref|ZP_02069244.1| hypothetical protein BACUNI_00650 [Bacteroides uniformis ATCC 8492]
 gi|156862187|gb|EDO55618.1| hypothetical protein BACUNI_00650 [Bacteroides uniformis ATCC 8492]
          Length = 428

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 137/432 (31%), Positives = 232/432 (53%), Gaps = 10/432 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  V+ A+    + + TPIQ ++IP++L+  D+  +AQTGTGKTA+++LP+L
Sbjct: 1   MKFSELHLNGNVLEALDAMRFEECTPIQEQSIPVILEGRDLIAVAQTGTGKTAAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
             L +G         +++ PTRELA Q+    E +     ++   + GG     FE Q +
Sbjct: 61  NKLSEGGHPADAINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV+I TPGR++ H + G + ++ +   ++DEADRMLDMGF   I  I   +P  
Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++Q+++ N L NP  +++       +       A Y  Y  +   + +
Sbjct: 181 RQTIMFSATMPAKIQQLAGNILNNPAEVKLAVSKPAEKI----VQAAYVCYENQKLGIIR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L +++T +  IIF + K  V  +  +L++   +V  +H +++Q  R +++  FK G I 
Sbjct: 237 SLFAEETPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRIN 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+  V N+DVP+ +E+Y+HRIGRT RA   G A T V++++  + 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVAITFVSEKEQGNF 356

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEK---IDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
             IEK +++ +  +         P  K    D  +           +   G +  K    
Sbjct: 357 KNIEKFLDRDIYKIPVPEELGEAPEYKPRAFDGGRRGGRGNGRKPGENKNGRNNSKGGKP 416

Query: 415 SQKSHIPLKESE 426
             K      E +
Sbjct: 417 RAKRPQNGGEKK 428


>gi|332186551|ref|ZP_08388295.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
 gi|332013534|gb|EGI55595.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
          Length = 469

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 197/372 (52%), Positives = 253/372 (68%), Gaps = 1/372 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS +++  V DAGY +PTPIQ   IP VL   D+ GIAQTGTGKTASFVLPM+
Sbjct: 1   MSFADLGLSDELLKTVTDAGYTEPTPIQASAIPSVLMMRDIIGIAQTGTGKTASFVLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  GR+R RMPR+LILEPTRELAAQVA+NFEKYG N+ L++ALLIGG+    Q K LE
Sbjct: 61  DILAHGRSRARMPRSLILEPTRELAAQVAENFEKYGANHKLSMALLIGGVSMGDQIKALE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR++D F RG +L+    +LVIDEADRMLDMGFIP I+ I + +P  RQT
Sbjct: 121 KGVDVLIATPGRLMDLFQRGNILLTGCSMLVIDEADRMLDMGFIPDIEEICTKLPKQRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++ F     ++      ++       FV   A  S +     + L 
Sbjct: 181 LLFSATMPPPIKKLADKF-LENPKMIEVARPASTNINITQFVVPVAPQSFEKRKRLRQLL 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD ++  IIFCN+K  V  L  SL++ GF    IHG+++Q  R+  L  FK G + ++V
Sbjct: 240 KQDEVRTAIIFCNRKTTVRELNKSLKQHGFRSGEIHGDMEQPQRLAELDLFKRGEVNILV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDI  V HVFNFD P   ++Y+HRIGRTGR G  G A+T VA +D ++ID I
Sbjct: 300 ASDVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRGGATGTAYTFVAPDDAENIDNI 359

Query: 361 EKLIEKKVDWLN 372
           EKL  +++D L 
Sbjct: 360 EKLTGQRIDRLE 371


>gi|297847866|ref|XP_002891814.1| hypothetical protein ARALYDRAFT_474570 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337656|gb|EFH68073.1| hypothetical protein ARALYDRAFT_474570 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 501

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 137/414 (33%), Positives = 216/414 (52%), Gaps = 17/414 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+G    V+  +  AG+ +PTPIQ +  P+ ++  D+ GIA+TG+GKT S++LP + 
Sbjct: 100 SFRDVGFPDYVLEEIKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTISYLLPAIV 159

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA Q+     K+G +  +    + GG+P   Q + L
Sbjct: 160 HVNAQPILAPGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKSTCIYGGVPKGPQVRDL 219

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 220 QKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQ 279

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL +SAT   E++++S+ FL NP ++ + +    A       V   ++  K    L +LL
Sbjct: 280 TLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKY-NKLVKLL 338

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        ++F + KK    +   L   G+   +IHG+  Q  R  +LS F+ G   +M
Sbjct: 339 EDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIM 398

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD+ DV +V N+D P   E+Y+HRIGRTGRAG  G A+T     + +    
Sbjct: 399 TATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKE 458

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           +  ++E+    ++ +L+S+               R   P P    GF  R    
Sbjct: 459 LSNILEEAGQKVSPELASM--------------GRSTAPPPPGLGGFRDRGSRR 498


>gi|84490017|ref|YP_448249.1| helicase [Methanosphaera stadtmanae DSM 3091]
 gi|84373336|gb|ABC57606.1| predicted helicase [Methanosphaera stadtmanae DSM 3091]
          Length = 583

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 153/454 (33%), Positives = 244/454 (53%), Gaps = 7/454 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL +SP++  AV D G+ + +PIQ   IP +L   DV G AQTGTGKTA+F +P+L
Sbjct: 4   LKFKDLNISPEIQKAVADMGFEEASPIQSLAIPQILAHKDVTGQAQTGTGKTAAFGIPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++     ++     IL PTRELA QVA+   K          L +  G P + Q K L
Sbjct: 64  ENIDSEDNNLQAI---ILCPTRELAIQVAEELRKLSVYLPKIDVLPVYGGQPIDRQIKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G  ++I TPGR++DH +RG L +NNI+ +++DEAD MLDMGF   I+ I   +P+ RQ
Sbjct: 121 QKGVQIIIGTPGRVMDHIDRGTLSLNNIKTVILDEADEMLDMGFREDIEYILEDIPYERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT+  E+ ++++ +  NP+ ++V     T   +       +         L   L
Sbjct: 181 FLLFSATLPQEILQLAQRYQTNPEIVKVTKHELTTPDV---EQKYFEVKEDMKLELLSRL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++FCN K+ V  L   L+ +G+    +HG++ Q  R +++S FK+G I+++
Sbjct: 238 LDLHDFDLSLVFCNTKRKVDKLVSHLQIRGYLADGLHGDLTQNQRDRVMSKFKKGNIEIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V  VFNFD+PN  E Y+HRIGRTGRAG+ GKA++ V+  +I  +  
Sbjct: 298 VATDVAARGIDVGGVEAVFNFDIPNDNEYYVHRIGRTGRAGKTGKAYSFVSGREIYQLRD 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           I++  + K++       S    ++K +  +    + N     K T    +          
Sbjct: 358 IQRYAKTKIEQAPIPALSDVEEVKKDNFIEELKEKINTEDISKETYIIEKLVEEDYNSID 417

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFM 453
           I     + +   ++  +E   D+    G +  FM
Sbjct: 418 IAATLLKGVIDDKRYKEEEFGDTEAHEGFVRFFM 451


>gi|332363463|gb|EGJ41246.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK355]
          Length = 523

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 153/413 (37%), Positives = 240/413 (58%), Gaps = 9/413 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQA---LIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++                  
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK---IDIAQHNHARKNNPIPQKSTGFDRRK 410
           E L +K++  L    +      +K   +   + + A ++     +  G D RK
Sbjct: 355 ENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSSFEKFGKDARK 407


>gi|297626176|ref|YP_003687939.1| DEAD/DEAH box helicase domain protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921941|emb|CBL56501.1| DEAD/DEAH box helicase domain protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 501

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 145/460 (31%), Positives = 231/460 (50%), Gaps = 14/460 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG++P +V A+   G   P PIQ   IP+ L   D+ G A+TGTGKT +F +P+L 
Sbjct: 17  TFADLGVAPSIVTALDAEGITHPFPIQEMAIPIALTGTDMIGQARTGTGKTLAFGIPILQ 76

Query: 62  IL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L++ PTRELA QV  +    G++ +  V  + GG+ ++ 
Sbjct: 77  KVVLKTDEGFDQLDPKDKPQALVMSPTRELAQQVGSDLAIAGRDRHARVLTIYGGVGYDD 136

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L++G DV++ TPGR+LD  +RG L ++++ I V+DEAD MLD+GF+P +Q +    
Sbjct: 137 QLDALKKGVDVVVGTPGRLLDLVHRGNLDLSHVRIAVLDEADEMLDLGFLPDVQALLDRT 196

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P +RQT++FSATM   +         N              T+       Y  +      
Sbjct: 197 PASRQTMMFSATMP-AVIMSLARSRLNQPVNIRAEGRDAQATVPQTTQFIYQAHELDKPE 255

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +   + M+  ++F   K+    L   L  +GF   ++HG+++Q  R K +  F+  
Sbjct: 256 MIGKMLQSEGMRKMMVFTRTKRAAQRLADDLRDRGFEAASLHGDLNQSQREKTMKRFRND 315

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            IQ++VA+D+AARG+D+ DV HV N++VP+  E Y+HRIGRTGRAG  G A TLV  +D+
Sbjct: 316 KIQVLVATDVAARGIDVDDVTHVVNYEVPDDPEQYVHRIGRTGRAGHEGVAVTLVDWQDV 375

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ---KSTGFDRRKK 411
                I K ++     +    S+    LE + IA     R  +  P+   +  G +RR +
Sbjct: 376 TRWKVINKALDLPFPEIEATFSTTPQFLEDLHIAPDTKGRLADAKPRDEGEHRGDERRDR 435

Query: 412 NYSSQKSHIPLKESEKIS---KLQQDIQENDADSLGFRGN 448
                      +  ++     K +     +DA      G+
Sbjct: 436 GKGHGGKGHHDRGRDRHEGHGKKKDGEHRHDAKDKDKGGD 475


>gi|157148730|ref|YP_001456049.1| ATP-dependent RNA helicase DeaD [Citrobacter koseri ATCC BAA-895]
 gi|157085935|gb|ABV15613.1| hypothetical protein CKO_04559 [Citrobacter koseri ATCC BAA-895]
          Length = 649

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 24  TFADLGLKAPILDALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLN 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 84  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 140

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 141 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 200

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 201 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 258 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 318 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 377

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 378 ERTMKLTIPEVELPNAEL 395


>gi|223982748|ref|ZP_03632977.1| hypothetical protein HOLDEFILI_00251 [Holdemania filiformis DSM
           12042]
 gi|223965288|gb|EEF69571.1| hypothetical protein HOLDEFILI_00251 [Holdemania filiformis DSM
           12042]
          Length = 424

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 148/373 (39%), Positives = 220/373 (58%), Gaps = 4/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L + P ++      GY  PT IQ K IP VL+  D+ G+AQTGTGKTA+F LP+L
Sbjct: 1   MKFNELPIHPSILKNCQRMGYTTPTKIQQKAIPPVLEGRDLLGLAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L K   + +   + L+L PTRELA Q+ DNF+ YG+   L   ++ GG+   AQ  +L
Sbjct: 61  DQLMKQPQKGKRAIKALVLTPTRELAIQIVDNFQLYGQGLPLKTVVIFGGVKQGAQVDQL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GAD+LI TPGR+LD   +  L ++ +EI V+DEADRMLDMGFI  ++ +++L+   +Q
Sbjct: 121 KKGADILIATPGRLLDLVGQRLLDLSQVEIFVLDEADRMLDMGFIHDVKRVSALLVNKKQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E+  ++ + L+NP R+E    S+  E IE                    +
Sbjct: 181 TLLFSATMPKEIAGLAASLLKNPVRVEATPVSTPIEKIEQRVYYVEKSEKNDL---LLRV 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++ + + ++F   K     +   L K      AIHGN  Q +R K L+ FK   IQ++
Sbjct: 238 LKKEEVTSALVFTRTKHEADRVVRFLTKGHVQAMAIHGNKSQNARQKALAAFKNHEIQVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV N+++PN +E Y+HRIGRT RAG+ G A +    ++  ++  
Sbjct: 298 VATDIAARGIDIEKLSHVINYNIPNISETYVHRIGRTARAGQEGIAISFCQNDERAYLKD 357

Query: 360 IEKLIEKKVDWLN 372
           IEKLI   +  + 
Sbjct: 358 IEKLIRYTIPVVK 370


>gi|162382798|ref|YP_454063.2| ATP-dependent RNA helicase DeaD [Sodalis glossinidius str.
           'morsitans']
          Length = 622

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 133/372 (35%), Positives = 217/372 (58%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ   IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   SFADLGLKAPILNALTDLGYEKPSPIQSACIPHLLAGRDVLGMAQTGSGKTAAFSLPLLH 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     +  P+ L+L PTRELA QV +    + K+      + +  G  ++ Q + L 
Sbjct: 67  NIKP---ELAAPQVLVLAPTRELAVQVGEACADFAKHMKGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + VP   QT
Sbjct: 124 QGPQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENILAQVPAEHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F+  P+ + + +  +T   I   +         +         
Sbjct: 184 ALFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVQGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE  G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALELSGYNSAALNGDMNQALREQTLDRLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLN 372
           E++++  +  ++
Sbjct: 361 ERIMKLTIPEVD 372


>gi|84778881|dbj|BAE73658.1| inducible ATP-independent RNA helicase [Sodalis glossinidius str.
           'morsitans']
          Length = 627

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 133/372 (35%), Positives = 217/372 (58%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ   IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 12  SFADLGLKAPILNALTDLGYEKPSPIQSACIPHLLAGRDVLGMAQTGSGKTAAFSLPLLH 71

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     +  P+ L+L PTRELA QV +    + K+      + +  G  ++ Q + L 
Sbjct: 72  NIKP---ELAAPQVLVLAPTRELAVQVGEACADFAKHMKGVNVVALYGGQRYDVQLRALR 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + VP   QT
Sbjct: 129 QGPQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENILAQVPAEHQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F+  P+ + + +  +T   I   +         +         
Sbjct: 189 ALFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVQGMRKNEA---LVRFL 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE  G++  A++G+++Q  R + L   K+G + +++
Sbjct: 246 EAEDFDAAIIFVRTKNATLEVAEALELSGYNSAALNGDMNQALREQTLDRLKDGRLDILI 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 306 ATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 365

Query: 361 EKLIEKKVDWLN 372
           E++++  +  ++
Sbjct: 366 ERIMKLTIPEVD 377


>gi|291086515|ref|ZP_06356033.2| ATP-dependent RNA helicase DeaD [Citrobacter youngae ATCC 29220]
 gi|291067655|gb|EFE05764.1| ATP-dependent RNA helicase DeaD [Citrobacter youngae ATCC 29220]
          Length = 658

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 133/378 (35%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 24  TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLN 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 84  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 140

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 141 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 200

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 201 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G+S  A++G+++Q  R + L   K+G + +++
Sbjct: 258 EAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQSLREQTLERLKDGRLDILI 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 318 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 377

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 378 ERTMKLTIPEVELPNAEL 395


>gi|242009038|ref|XP_002425300.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212509065|gb|EEB12562.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 1014

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 145/467 (31%), Positives = 238/467 (50%), Gaps = 19/467 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++A  G+S KV+  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 349 EWAQCGVSKKVLEILKKNGFEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFR 408

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P  +I+ PTREL  Q+  + +K+ K+ +L V  + GG     Q  +L
Sbjct: 409 HILDQPPLEETDGPIAIIMTPTRELCMQIGKDCKKFSKSVSLKVVCVYGGTGISEQIAEL 468

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGAD+++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 469 KRGADIVVCTPGRMIDMLAANSGRVTNLLRVTYIVLDEADRMFDMGFEPQVMRIIDNVRP 528

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   L  P  ++V   S   +              KK   L 
Sbjct: 529 DRQTVMFSATFPRQMEALARRILTKPIEVQVGGRSVVCKD--VEQHVVVLDEDKKFLKLL 586

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + I+F +++++  +L   L K  +   ++HG IDQ  R   + +FK G +
Sbjct: 587 ELLGIYQNQGSVIVFVDKQESADDLLKELMKASYPSMSLHGGIDQFDRDSTIIDFKSGKV 646

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  E  ++
Sbjct: 647 KLLIATSVAARGLDVKQLILVVNYDCPNHYEDYVHRCGRTGRAGNKGVAYTFITPEQERY 706

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I + +E         LSS+  P    ++     A+      +  TG     K +   
Sbjct: 707 AGEIIRALE---------LSSVAVPESLRNLWDRYKAKLAAEGKKVHTGGGFSGKGFKFD 757

Query: 417 KSHIPL-KESEKISKLQQDIQENDADSL--GFRGNMPAFMLPKNRGK 460
           +S   +  E +K  K    +Q++D + L       +   + PK   K
Sbjct: 758 ESEAMMANEKKKFQKAALGLQDSDDEDLEQDIDQQIENMLAPKRIVK 804


>gi|296105329|ref|YP_003615475.1| ATP-dependent RNA helicase RhlB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059788|gb|ADF64526.1| ATP-dependent RNA helicase RhlB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 421

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 138/411 (33%), Positives = 211/411 (51%), Gaps = 10/411 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKV+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVIEALENKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLTQATGLKIGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
            AIE  I   +     +    LS L PP +++  A+  +  + +  P+   
Sbjct: 369 PAIEAYIGHSIPQSKYNPDALLSELPPP-KRLTRARSGNGPRRSGAPRNRR 418


>gi|269959614|ref|ZP_06173995.1| Superfamily II DNA and RNA helicase [Vibrio harveyi 1DA3]
 gi|269835672|gb|EEZ89750.1| Superfamily II DNA and RNA helicase [Vibrio harveyi 1DA3]
          Length = 407

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 199/371 (53%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L L   ++ A+ + GY +PT IQ + IP  L   D+   A TGTGKTA+FVLP L 
Sbjct: 4   TFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    R   P  + IL PTRELA QVAD      KN  L +  + GG+ ++     L 
Sbjct: 64  YLQDFPRRKPGPARILILTPTRELAMQVADQARALAKNTKLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+ ++ +  +     IE L++DEADRMLDMGF P +  +++   + +QT
Sbjct: 124 TTQDIVVATPGRLREYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     ++  + + L  P  I+  +P    + I   +        K         
Sbjct: 184 LLFSATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADDAEHKLA---LLKH 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F   ++ +  L   LE        I G + Q  R   ++ F+EGT+ ++
Sbjct: 241 IITEQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFREGTVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A ++V   D   +D 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR 360

Query: 360 IEKLIEKKVDW 370
           + + +++ +  
Sbjct: 361 VARYVKEDIKE 371


>gi|91092124|ref|XP_972501.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68
           [Tribolium castaneum]
          Length = 540

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 126/380 (33%), Positives = 198/380 (52%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  +   G+  PTPIQ +  P+ L   D+ GIA TG+GKT S++LP + 
Sbjct: 92  TFEEAGFPDYVMSEIRKMGFKHPTPIQSQGWPIALSGRDMVGIASTGSGKTLSYILPAIV 151

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       R   P  L+L PTRELA Q+      +G++  +    + GG P   Q   L
Sbjct: 152 HINHQPRLLRGDGPIALVLAPTRELAQQIQQVATDFGRSSKIRNTCVFGGAPKGPQANDL 211

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G +++I TPGR++D     +  +     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 212 MDGVEIVIATPGRLIDFLESNRTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 271

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQL 238
           TL++SAT   E+Q ++  FL++  +I V +   +A       +    +Y K+        
Sbjct: 272 TLMWSATWPKEVQALAAEFLKDYIQINVGSLQLSANHNILQIIDVCQEYEKETKLSTLLK 331

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               +     IIF   KK V  +   +++ G+    IHG+  Q+ R  +L +F+ G   +
Sbjct: 332 EIMAEKENKTIIFIETKKRVDEITRKMKRDGWPAVCIHGDKSQQERDWVLQDFRTGKAPI 391

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ DV  V NFD P+ +E+Y+HRIGRTGR+ R G A+T     +     
Sbjct: 392 LVATDVAARGLDVEDVKFVINFDYPSNSEDYVHRIGRTGRSQRTGTAYTFFTPANANKAA 451

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++++    +N  L  +
Sbjct: 452 DLVSVLKEAKQVINPKLQEM 471


>gi|312867114|ref|ZP_07727324.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           parasanguinis F0405]
 gi|311097243|gb|EFQ55477.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           parasanguinis F0405]
          Length = 536

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 141/373 (37%), Positives = 228/373 (61%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS +++  +  AG+V+ +PIQ +TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLGLEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++       + + L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDVDN---TVIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +++IE L++DEAD ML+MGF+  I+ I S VP TRQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHIETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + ++++   F++ P+ +++     T + ++  ++                  
Sbjct: 178 LLFSATMPEAIKRIGVQFMKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKTGQSITFVSPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  +  
Sbjct: 355 ENLTKKRMKGMKP 367


>gi|226229135|ref|YP_002763241.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca
           T-27]
 gi|226092326|dbj|BAH40771.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca
           T-27]
          Length = 594

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 143/368 (38%), Positives = 203/368 (55%), Gaps = 1/368 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F  LG+ PK+  A++  GY +PTP+Q   IP +L+  DV  +A TGTGKTA+F LP +  
Sbjct: 16  FGALGVHPKIAEALVGLGYEEPTPVQRAAIPPLLEGKDVLALAATGTGKTAAFSLPLLTR 75

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I EKGR     P  LIL PTRELA QVA+   +YGK   L    + GG   E Q + L R
Sbjct: 76  IAEKGRRAGNGPGVLILVPTRELAMQVAEAVHRYGKPLGLQALAVYGGASMELQVRALRR 135

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV+I TPGR +DH  RG L+ + +  +V+DEAD MLDMGF   ++ I    P  +QT 
Sbjct: 136 GVDVVIATPGRAVDHIKRGTLVFDGLSAVVLDEADEMLDMGFAEELEAILDATPENKQTA 195

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +  +++  L+ P  ++V                 Y             +  
Sbjct: 196 LFSATLPPRIGGIAQKHLRQPVHVKVEREVVAEGESARVRQVAYVVSRAHKMPALARVLD 255

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + I+FC  +  V  L  +L  +G    A+HG + Q  R +++  F+   + L++A
Sbjct: 256 IEQPTSAIVFCRTRTEVDELSETLTARGLRAEALHGGLSQDQRDRVMQKFRARKVDLLIA 315

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HV NFDVP  AE Y+HRIGRTGRAGR G A T     + + +  IE
Sbjct: 316 TDVAARGLDVKHVSHVVNFDVPVDAETYVHRIGRTGRAGREGVAVTFAEPRENRLLRNIE 375

Query: 362 KLIEKKVD 369
           +   +K++
Sbjct: 376 RQTGQKIE 383


>gi|78485359|ref|YP_391284.1| DEAD/DEAH box helicase-like [Thiomicrospira crunogena XCL-2]
 gi|78363645|gb|ABB41610.1| DEAD/DEAH box helicase family protein [Thiomicrospira crunogena
           XCL-2]
          Length = 393

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 150/373 (40%), Positives = 223/373 (59%), Gaps = 3/373 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F+ LGLS  +V AV + GY  PT IQ + IP++L   D+   AQTGTGKTASFVLP +
Sbjct: 1   MSFSKLGLSDPIVKAVSERGYDAPTDIQKQAIPIILSGKDLMAAAQTGTGKTASFVLPLL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +      R R  R LIL PTRELA QV  N   Y K+ NL+     GG   +AQ ++L
Sbjct: 61  EKLNTDNAIRGRSIRALILVPTRELAMQVETNVVDYAKHLNLSSMAAYGGTDIDAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD   +  L  +++E LV+DEAD+MLDMGFI  +  IT  +P  RQ
Sbjct: 121 MQGIDILVATPGRLLDLAYQRALFFDDLEFLVLDEADKMLDMGFIDDLYKITDRLPHQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT+T+ ++ ++ + + +       +P +        ++ T  + +K    L   L
Sbjct: 181 SLLFSATLTEAVRYLAADTVSDDATEISISPQNKTTPKIKQWLITVDKDTKSA--LLSHL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      +IF  +K +   L   L K+G    +IH    Q +R ++LS FK G ++ +
Sbjct: 239 INEQHWDQALIFVEKKHSAAKLVEQLGKRGIIADSIHSGRSQAAREQVLSEFKSGKLKFL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ +AARG+DI ++  V N+D+P  AE YIHRIGRTGRAG  G+A +LV+K+D K++ A
Sbjct: 299 IATGIAARGIDIDNLSRVVNYDLPYPAEEYIHRIGRTGRAGATGEALSLVSKDDFKNLCA 358

Query: 360 IEKLIEKKVDWLN 372
           IE L+   ++ + 
Sbjct: 359 IESLLGHLIERIE 371


>gi|89072912|ref|ZP_01159469.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89051434|gb|EAR56889.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 432

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 155/411 (37%), Positives = 235/411 (57%), Gaps = 11/411 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G S  +V A+ + GY K TP+Q K IP   +  D+  +AQTGTGKTA+F LP++
Sbjct: 1   MSFLSQGFSQDLVKALTEIGYEKLTPVQQKAIPQARRGADILALAQTGTGKTAAFSLPII 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +          R LIL PTRELA Q+A+N  +Y K  ++    + GG    +Q K+
Sbjct: 61  QKLIEKPKSKSRFNVRALILAPTRELAEQIANNINEYAKYTDVNCTAIFGGKKMSSQEKR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE+G D+L+ TPGR+++H     + + N+E LV DEADRMLDMGFI  I+ I   +    
Sbjct: 121 LEQGVDILVATPGRLIEHMELNNVSLANLEFLVFDEADRMLDMGFIGAIRVILEDIRTKP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT + ++  ++ + L  P+RI V   +STA+TI H          ++   +   
Sbjct: 181 QTMLFSATSSPQMNSLASDILHKPQRITVTPENSTADTIAHVVYPVDEDRKRE---MLSE 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +   K  ++F N K++   L   L+  G      HG+  Q +R + L  FKEG  ++
Sbjct: 238 LIGKKNWKQVLVFVNYKESANQLVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+++AARGLDI ++ +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+   + 
Sbjct: 298 MVATEVAARGLDIQNLPYVVNYDMPFLAEDYVHRIGRTGRAGQKGNAISFVSREEELTLV 357

Query: 359 AIEKLIEKKV---DWLNGDLSSLNPPLEKIDIA---QHNHARKNNPIPQKS 403
            IE+LI +++     +  +  S +  LE++           RKNNP   +S
Sbjct: 358 QIERLIGQRIHRVQLIGYEPKSRDALLERMHSKPAFSQREGRKNNPTQDQS 408


>gi|66819701|ref|XP_643509.1| hypothetical protein DDB_G0275443 [Dictyostelium discoideum AX4]
 gi|74897315|sp|Q553B1|DDX46_DICDI RecName: Full=ATP-dependent RNA helicase ddx46; AltName:
           Full=ATP-dependent RNA helicase helB1; AltName:
           Full=DEAD box protein 46
 gi|60471516|gb|EAL69472.1| hypothetical protein DDB_G0275443 [Dictyostelium discoideum AX4]
          Length = 1151

 Score =  167 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 143/431 (33%), Positives = 218/431 (50%), Gaps = 11/431 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  GL+ KV   +    Y KPT IQ +TIP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 510 SWAQAGLTEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFR 569

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +            +  I+ PTRELA Q+    +K+ K   L  A + GG     Q  +L
Sbjct: 570 HILAQPKSAPGEGMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQIAEL 629

Query: 120 ERGADVLICTPGRIL---DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGAD+++CTPGR++      NR    +  +  LV+DEADRM DMGF P I  I   +  
Sbjct: 630 KRGADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSIRP 689

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ V++  L  P  I     S  +  IE            +   L 
Sbjct: 690 DRQTIMFSATFPPKVENVAKKILNKPLEIIAGGRSIVSSDIEQFV--EVRPTETRFRRLI 747

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL         +IF N+++   NL   L    +   ++HG+ DQ  R + +S+FK    
Sbjct: 748 ELLSIWYHKGQILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVK 807

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+ LA+RGLDI D+  V NFD P+  E+Y+HR+GRTGRAG  G A+T +  ++ + 
Sbjct: 808 TILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEERF 867

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
             +I K +E+    +  +L  LN   EK    +    +     P   TG   +       
Sbjct: 868 SSSIIKALEQSGSKVPDELRKLNDTYEK----KRKEGKDVLLAPTGFTGRGHKFDAAEED 923

Query: 417 KSHIPLKESEK 427
           K +I  K+  K
Sbjct: 924 KKNIERKQQRK 934


>gi|323497478|ref|ZP_08102496.1| putative ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
 gi|323317561|gb|EGA70554.1| putative ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
          Length = 426

 Score =  167 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 154/406 (37%), Positives = 229/406 (56%), Gaps = 11/406 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA    SP++V A+ + GY K TP+Q K IP   + HD+   AQTGTGKTA+F LP++
Sbjct: 1   MSFASQNFSPEIVKALTECGYEKLTPVQQKAIPFARKGHDILANAQTGTGKTAAFALPIV 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                     +    R +IL PTRELAAQ+A N + Y K   +    + GG    +Q K 
Sbjct: 61  QNILDNAKPRQRHQARAVILAPTRELAAQIATNIQDYTKYTEIKTVAIYGGAKMSSQQKA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G DVL+ TPGR+++H +   + + N+E LV DEADRMLDMGFI  I+NI S V    
Sbjct: 121 LEAGVDVLVATPGRLIEHMDLNNVSLVNLEFLVFDEADRMLDMGFISAIENIMSGVATKP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT + ++  ++   L+ PKR+ V   ++TAET+ H       +  ++       
Sbjct: 181 QTMLFSATFSAQMNTLATKILRQPKRVSVARENATAETVAHVVYPVEQERKRELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F N K+    L   L+  G      HG+  Q +R + L  FK G  ++
Sbjct: 239 -IGRKNWQQVLVFVNYKETANELVKELKLDGIKAVLCHGDKAQSARRRALDEFKSGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+D+AARGLDI ++ HV NFD+P  AE+Y+HRIGRTGRAG+ G A + V +++   + 
Sbjct: 298 MIATDVAARGLDIQNLPHVVNFDMPFLAEDYVHRIGRTGRAGQRGNAVSFVNRDEELTLQ 357

Query: 359 AIEKLIEKKV--DWLNG----DLSSLNPPLEKIDIAQHNHARKNNP 398
            +E LI +++    L G    +  +L   +      ++   R+NNP
Sbjct: 358 QVEMLIGQRIYRKELEGYEPKNRDALLEKMHSKPAFKNRKTRQNNP 403


>gi|313205949|ref|YP_004045126.1| dead/deah box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|312445265|gb|ADQ81620.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|315022262|gb|EFT35290.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer
           RA-YM]
 gi|325336611|gb|ADZ12885.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
           RA-GD]
          Length = 371

 Score =  167 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 157/365 (43%), Positives = 218/365 (59%), Gaps = 3/365 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  L LS  ++ A+ DAGY  PT IQ K IP +L+  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MNFTQLSLSSPILKAISDAGYTTPTAIQEKAIPTILEGRDLIGCAQTGTGKTAAFSIPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL +   + +  R LIL PTRELA Q+ +N E+Y K  N+    + GG+P   Q + L 
Sbjct: 61  QILSETPKKGKSVRALILTPTRELAIQIQENIEQYSKFLNIKHLSIFGGVPQGKQERALN 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+LI TPGR+LD   +G L ++ IEILV+DEADRMLDMGF+  ++ I + VP  RQT
Sbjct: 121 QGVDILIATPGRLLDLMQQGLLSLSQIEILVLDEADRMLDMGFVNDVKKILTKVPKKRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM + +++ +E  L NP  + V   SSTA+TIE                    + 
Sbjct: 181 LFFSATMPNSIRQFAETILDNPAEVTVTPVSSTAKTIEQSVYFVEKNDKTNL---LINIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              +    +IF   K     L   L + G    AIHGN  Q +R K L +FK+  I +++
Sbjct: 238 KDTSELRSLIFTRTKHGADRLVKQLGRTGIFAAAIHGNKSQNARQKALKDFKDNRISVLI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++  V N+++PN  E Y+HRIGRTGRAG  G A +    E+ K +  I
Sbjct: 298 ATDIAARGIDIDELPQVINYELPNVPETYVHRIGRTGRAGTSGNAISFCGTEERKDLKNI 357

Query: 361 EKLIE 365
           +KLI 
Sbjct: 358 QKLIG 362


>gi|332289421|ref|YP_004420273.1| ATP-dependent RNA helicase RhlB [Gallibacterium anatis UMN179]
 gi|330432317|gb|AEC17376.1| ATP-dependent RNA helicase RhlB [Gallibacterium anatis UMN179]
          Length = 399

 Score =  167 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 118/383 (30%), Positives = 198/383 (51%), Gaps = 1/383 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P ++ A+   G    TPIQ  ++P  L   D+ G AQTGTGKT +F+  +  
Sbjct: 10  KFSDFNLHPNILSALQKMGMTYCTPIQADSLPYSLAGKDIAGQAQTGTGKTVAFLTALFQ 69

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +  A       +IL PTRELA Q+  + + + +   L + L  GG  ++ Q + L++
Sbjct: 70  KLIQEPASHHTLAAIILAPTRELAVQIYHDAQHFAQTTGLKLGLAYGGDGYDKQLQALQQ 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G ++LI T GR++D+  +  + +++++++V+DEADRM D+GFI  I+ I    P   + L
Sbjct: 130 GVNILIGTTGRVIDYMKQRIISLDHVQVVVLDEADRMFDLGFIRDIRYILRHCPPPSERL 189

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
               + T   +     F             S  +T +      +   ++    L   L  
Sbjct: 190 TMLFSATLSFKVRELAFEDMND-PHYIEIESAYKTADTVKEELFYPSNQDKMRLLLTLLE 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++  +  IIF N K     +   L         + G++ Q+ R  +L  F  G + ++VA
Sbjct: 249 EEWPERCIIFANTKHQCEKIWQYLLADQLRAGLLTGDVPQKKRFALLEQFANGQLDILVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG +G + +   ++   ++ AIE
Sbjct: 309 TDVAARGLHIPQVTHVFNYDLPDDYEDYVHRIGRTGRAGENGISISFACEDYAVNLPAIE 368

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
           + I   +   + D S+L P  ++
Sbjct: 369 QYIGHSIPVSHYDPSALLPLPKR 391


>gi|294791601|ref|ZP_06756749.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 6_1_27]
 gi|294456831|gb|EFG25193.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 6_1_27]
          Length = 432

 Score =  167 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 145/436 (33%), Positives = 232/436 (53%), Gaps = 20/436 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+  +++ A+   G  +PTPIQ ++IP+V + +DV   AQTGTGKT +F+LP+L 
Sbjct: 3   SFKSLGVCDELIQALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPVLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +      V   + LI+ PTREL  Q++D  ++ G   N+ +  LIGG   EAQ ++L R
Sbjct: 63  RVHT---DVHQEQVLIIAPTRELIKQISDEAKEIGSILNVDILPLIGGKTIEAQLQQLGR 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+LDH  RG L ++ I  +V+DEAD+ML MGF+P I+N+       RQ L
Sbjct: 120 RPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLIGQTDANRQLL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ D+++ +++ ++  P  +       T E+I+        +           +  
Sbjct: 180 LFSATIPDKIRNLAKAYMSKPVSVTAEGKHITLESIDQRVYMMNPEEK---TQRLIKMIE 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D     I+FCN+++  + L + L   G ++  +HG++ Q  R +IL +F +   Q++VA
Sbjct: 237 DDNPFLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI  + HV+N+DVP   + YIHRIGRTGRAG  G A T    +D   +  IE
Sbjct: 297 TDIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGVAVTFATPQDESWLRRIE 356

Query: 362 KLIEKKVDWLNGD-------LSSLNPPLEKI-------DIAQHNHARKNNPIPQKSTGFD 407
           + I+  +     D        +S  P   K+          Q   A+ +     K +   
Sbjct: 357 RAIQATLTKYTKDGQIKTKGNASTAPKRTKLASKPKITSTYQSTKAKAHKARGHKGSNTR 416

Query: 408 RRKKNYSSQKSHIPLK 423
           +R+ + S        +
Sbjct: 417 QRRASTSQTGRRGKRR 432


>gi|262066543|ref|ZP_06026155.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379777|gb|EFE87295.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium
           periodonticum ATCC 33693]
          Length = 528

 Score =  167 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 130/368 (35%), Positives = 206/368 (55%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F +LGL  K++  +   GY  PTPIQ  TIP +L+   D+ G AQTGTGKTA+F LP++
Sbjct: 9   EFRELGLGEKILKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E         + ++L PTRELA QVA+       +  + V  + GG   + Q K ++
Sbjct: 69  ENFEHSDH----IQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR++D   R  L +N+++  V+DEAD ML+MGF+  I+ I +     ++ 
Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFVLDEADEMLNMGFVEDIEKILTFTNDDKRM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+ K+++  ++  + + V +   T +  E      +    +        + 
Sbjct: 185 LFFSATMPPEIMKIAKTHMKEYEVLAVKSRELTTDLTEQ---IYFEVNERDKFEALCRII 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  GIIFC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I ++V
Sbjct: 242 DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T +  ++ + +  I
Sbjct: 302 ATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 361

Query: 361 EKLIEKKV 368
           +K ++K++
Sbjct: 362 QKAVKKEI 369


>gi|134102495|ref|YP_001108156.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|291004114|ref|ZP_06562087.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915118|emb|CAM05231.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 578

 Score =  167 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 149/372 (40%), Positives = 229/372 (61%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L L P+V+  + + GY  P+PIQ +TIP +L+ HDV G+AQTGTGKTA+F LP+L+
Sbjct: 3   SFDELDLDPRVLQVLSEIGYETPSPIQAQTIPPLLEGHDVMGLAQTGTGKTAAFALPILS 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+      + P+ L+L PTRELA QVA+ F++Y  +      L I  G  +  Q   L+
Sbjct: 63  RLDL---DAKTPQALVLAPTRELAIQVAEAFQRYAAHLPGFHVLPIYGGQSYGPQLAGLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH N+G L +  ++ LV+DEAD ML MGFI  ++ I   VP  RQ 
Sbjct: 120 RGAHVVVGTPGRVIDHLNKGSLDLTGLKNLVLDEADEMLRMGFIEDVETILQSVPEQRQV 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  +++K+S+++L  P  I V T ++TA  I   ++                ++
Sbjct: 180 ALFSATMPPQIRKISQSYLNEPVEISVKTKTTTATNITQRYIPVRGPAKLDALTRILEVE 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D M   I+F   K+    L   L+ +GFS  AI+G+I Q +R + + + +EG + ++V
Sbjct: 240 TFDAM---IVFVRTKQLTEELAEKLQARGFSAAAINGDIPQAARERTIGHLREGRVDILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+ +E+Y+HRIGRTGRAGR G+A   V+  +   + +I
Sbjct: 297 ATDVAARGLDVERISHVLNYDIPHDSESYVHRIGRTGRAGRSGEAILFVSPRERHMLRSI 356

Query: 361 EKLIEKKVDWLN 372
           EK   + +  + 
Sbjct: 357 EKATRQSIGQME 368


>gi|254413664|ref|ZP_05027434.1| DEAD/DEAH box helicase domain protein [Microcoleus chthonoplastes
           PCC 7420]
 gi|196179771|gb|EDX74765.1| DEAD/DEAH box helicase domain protein [Microcoleus chthonoplastes
           PCC 7420]
          Length = 464

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 135/369 (36%), Positives = 213/369 (57%), Gaps = 5/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS + +  +   G+  PT IQ + IP +L   DV   +QTGTGKTA+F LPML
Sbjct: 3   LSFNNLGLSEECLHQLEKLGFDTPTEIQSQAIPELLAGRDVVAQSQTGTGKTAAFSLPML 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LIL PTRELA QVAD       N  + +  + GG   + Q + L+
Sbjct: 63  EQIDPNARGVQ---ALILAPTRELARQVADAIRDLTSNRRVGIVTVYGGQSIDRQIRLLQ 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R A +++ TPGR++D  +RG L ++ ++ +V+DEAD ML MGFI  ++ I    P  RQT
Sbjct: 120 RNAQMVVGTPGRVIDLLDRGDLKLDQVKWVVLDEADEMLSMGFIDDVKKILKQAPKERQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM   ++ +   FL++P  + V  P +T   IE          SK  +   Q + 
Sbjct: 180 ACFSATMPKAIRDLVNQFLKSPVTVTVELPKATPARIEQRVYMIPRGCSK--SKALQPIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +  +  +IF   +++   L   L+  G SV   HG++ Q  R ++LS F++  ++ +V
Sbjct: 238 ALEDPEAALIFVRTRRSAAELTSQLQAAGHSVDEYHGDLSQSQRERLLSRFRQSQVRWVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P++ E+YIHRIGRTGRAG+ G A +L+   + + +  I
Sbjct: 298 ATDIAARGLDVDHLTHVINYDLPDQVESYIHRIGRTGRAGKTGTAISLIQPFERRKLHQI 357

Query: 361 EKLIEKKVD 369
           E+ + + + 
Sbjct: 358 ERKVRQNLQ 366


>gi|302392742|ref|YP_003828562.1| DEAD/DEAH box helicase domain protein [Acetohalobium arabaticum DSM
           5501]
 gi|302204819|gb|ADL13497.1| DEAD/DEAH box helicase domain protein [Acetohalobium arabaticum DSM
           5501]
          Length = 527

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 141/372 (37%), Positives = 213/372 (57%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS ++  AV D G+ + TPIQ + IP +L   DV G AQTGTGKTA+F +P+L 
Sbjct: 5   QFEELNLSNEITKAVEDMGFEEATPIQTEAIPHLLAGKDVIGQAQTGTGKTAAFGIPILE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     V+    L+L PTRELA QV++   +  K       L +  G   + Q K L+
Sbjct: 65  KIDPDDKSVQ---ALVLCPTRELAIQVSEEIGRLAKYKRKIKTLPVYGGQSIKRQIKALK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  ++I TPGR +DH  RG L  +N++++++DEAD ML+MGF   I+ I   V   RQT
Sbjct: 122 KGVQIVIGTPGRTMDHMRRGTLKFDNLKMVILDEADEMLNMGFRDDIETILEGVKGKRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + FSATM   + K+ + +  +P+ +          T+ +     +    +    +   L 
Sbjct: 182 IFFSATMPQSILKLRKKYQTDPEIV---KVVHKKLTVPNIEQGYFEVNRRNKLEVLSRLI 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  I+FCN +K V  L   L+ +G+ V  IHG ++Q  R ++++ FK GTI+ +V
Sbjct: 239 DIYNPKLSIVFCNTRKQVDELTIQLQARGYFVDGIHGGLNQPQRDRVMNKFKNGTIETLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGR GR G AFT V  ++I  +  I
Sbjct: 299 ATDVAARGIDVDDVEAVFNYDIPQDIEYYVHRIGRTGRVGRQGYAFTFVVGKEIYQLKKI 358

Query: 361 EKLIEKKVDWLN 372
           EK  + K++   
Sbjct: 359 EKYAKTKIERKQ 370


>gi|238879720|gb|EEQ43358.1| hypothetical protein CAWG_01593 [Candida albicans WO-1]
          Length = 562

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 129/381 (33%), Positives = 204/381 (53%), Gaps = 3/381 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
            F + G    V+  V D G+ KPTPIQ +  P+ L   D+ GIA TG+GKT S+ LP  +
Sbjct: 129 TFDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIV 188

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P  L+L PTREL  Q+     K+GK+  +    + GG P   Q + L
Sbjct: 189 HINAQPQLQYGDGPIVLVLAPTRELTVQIQTECSKFGKSSRIRNTCVYGGAPKGPQIRDL 248

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG ++ I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 249 ARGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 308

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+Q+++ ++L +P ++ + +    A       V    ++SK+  L++ L 
Sbjct: 309 TLMWSATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVKHLE 368

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            + +   N I+     K   +   +     G+   AIHG+ +Q  R  +L  F++G   +
Sbjct: 369 SALNEKDNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSI 428

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARG+D+  + HV N+D+P   E+Y+HRIGRTGR G  G A +   + + K   
Sbjct: 429 MVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGG 488

Query: 359 AIEKLIEKKVDWLNGDLSSLN 379
            + K++ +    +  +L   +
Sbjct: 489 DLCKIMREANQTVPPELQRFD 509


>gi|94498979|ref|ZP_01305517.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
 gi|94428611|gb|EAT13583.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
          Length = 457

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 160/460 (34%), Positives = 244/460 (53%), Gaps = 6/460 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L+  +V A+ + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MQFTDLALAEPIVKAIAEQGYTSPTPIQAQGIPAVLSGRDLLAAAQTGTGKTAGFTLPIL 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                     +    R L+L PTRELAAQV DN   Y K   +   ++ GG+    Q ++
Sbjct: 61  QKLLDAPKGVKPNQARVLVLTPTRELAAQVQDNVATYSKYTKIRSEVVFGGVKINPQMQR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+LD  N+  +  + ++ L++DEADRMLDMGFI  I+ I  L+P  R
Sbjct: 121 LRRGVDILVATPGRLLDLHNQNAIHFDQLDTLILDEADRMLDMGFINDIRKIMRLLPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT +D+++ +++  ++NP  + V   ++TA+ +     +  A   K+   L   
Sbjct: 181 QNLMFSATFSDKIRALAKTIVENPVEVSVTPKNTTAKKV---RQSIIAVDKKQKINLLID 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +++     ++F   K     +   L        AIHGN  Q +R + L++FK   IQ+
Sbjct: 238 LLAKEKWHQVLVFSRTKHGANKIAKQLSDADIPAAAIHGNKSQGARTRALADFKSNDIQV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV NFD+PN AENY+HRIGRT RAG  G A + V+ ++I  + 
Sbjct: 298 LVATDIAARGIDIDQLPHVINFDLPNVAENYVHRIGRTARAGSDGDALSFVSIDEIDLLA 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPL-EKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            I+  I + ++ L+    + + PL E     +    +K     Q ST      K      
Sbjct: 358 DIQNFIGEPIERLDYPGFAPSKPLPELKLNLKPKKIKKPKKPKQASTDSKAAPKQKKKPA 417

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
           +     +  K +   +  ++N   S   +  +       N
Sbjct: 418 NKSASAKKAKTTANSKPKRQNRKPSDQKKSPIKRPSQSPN 457


>gi|16331758|ref|NP_442486.1| ATP-dependent RNA helicase DeaD [Synechocystis sp. PCC 6803]
 gi|1001719|dbj|BAA10556.1| ATP-dependent RNA helicase; DeaD [Synechocystis sp. PCC 6803]
          Length = 492

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 150/368 (40%), Positives = 220/368 (59%), Gaps = 6/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS K    + D G+  PT IQ + IPL+L   D+   +QTGTGKTA+F LP++ 
Sbjct: 8   TFADLGLSEKRCQLLADIGFEAPTQIQTEAIPLLLSGRDMLAQSQTGTGKTAAFALPLMD 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA QVA+  + +     L +  + GG   E Q + LER
Sbjct: 68  RIDPEGD----LQALILTPTRELAQQVAEAMKDFSHERRLFILNVYGGQSIERQIRSLER 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++D  +R KL +  I+ +V+DEAD ML MGFI  ++ I    P TRQT 
Sbjct: 124 GVQIVVGTPGRVIDLIDRKKLKLETIQWVVLDEADEMLSMGFIDDVKTILRKTPPTRQTA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E++++   FL +P  + V    ST   IE         +SK  A   Q +  
Sbjct: 184 CFSATMPREIKELVNQFLNDPALVTVKQTQSTPTRIEQQLYHVPRGWSKAKA--LQPILE 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  ++ IIF   K+   +L   L++ G SV   HGN+ Q  R +++  F++G I+L+VA
Sbjct: 242 MEDPESAIIFVRTKQTAADLTSRLQEAGHSVDEYHGNLSQSQRERLVHRFRDGKIKLVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++ HV NFD+P+ AE YIHRIGRTGRAG+ GKA  LV   D + + +IE
Sbjct: 302 TDIAARGLDVNNLSHVVNFDLPDNAETYIHRIGRTGRAGKTGKAIALVEPIDRRLLRSIE 361

Query: 362 KLIEKKVD 369
             ++++++
Sbjct: 362 NRLKQQIE 369


>gi|66802312|ref|XP_629938.1| hypothetical protein DDB_G0291804 [Dictyostelium discoideum AX4]
 gi|74896805|sp|Q54E49|DDX6_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx6; AltName:
           Full=DEAD box protein 6
 gi|60463332|gb|EAL61523.1| hypothetical protein DDB_G0291804 [Dictyostelium discoideum AX4]
          Length = 423

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 121/376 (32%), Positives = 190/376 (50%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF DL L   ++  + + GYVKP+PIQ K IP+ L   D+   A+ GTGKTASF++P L 
Sbjct: 50  DFDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIPALE 109

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             +       + + LIL PTRELA Q +   ++ GK  N+ V    GG   +    +L  
Sbjct: 110 KTDPT---KDVIQVLILVPTRELALQTSQVCKELGKYMNVQVMASTGGTSLKDDIMRLYN 166

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD   +    ++N   +++DEAD++L   F P ++ + + +P  RQ L
Sbjct: 167 PVHILVATPGRVLDLAQKNVANLSNCHTMIMDEADKLLSQEFQPLVEQLINFLPQQRQIL 226

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F ++  +           T++           ++       L S
Sbjct: 227 LFSATFPVTVKS----FKEHYLQQAFEINLMEELTLKGVTQYYAFVEERQKIHCLNTLFS 282

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 283 KLQINQSIIFCNSVNRVELLAKKITELGYSCFFIHAKMVQAHRNRVFHDFRNGACRNLVS 342

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI DV  V NFD P  +E Y+HRIGR+GR G  G A  L+  ED   +  IE
Sbjct: 343 SDLFTRGIDIQDVNVVINFDFPKHSETYLHRIGRSGRFGHLGLAINLITYEDRFSLYKIE 402

Query: 362 KLIEKKVDWLNGDLSS 377
           + +  ++  +   +  
Sbjct: 403 QELGTEIKPIPPVIDK 418


>gi|309972421|gb|ADO95622.1| ATP-dependent RNA helicase [Haemophilus influenzae R2846]
          Length = 439

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 137/398 (34%), Positives = 211/398 (53%), Gaps = 6/398 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F    LSP+++ A+    Y +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP + 
Sbjct: 5   QFEQFDLSPELLKALEKKSYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++       
Sbjct: 65  HLLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QT
Sbjct: 125 TNQDLVVATPGRLLQYIKAENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL       L N     V+   S  E  +      +A  ++    L     
Sbjct: 185 LLFSATLEGELLVDFAARLLNDPVK-VDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +  GI+F  ++++   L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 244 ETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPPL--EKIDIAQHNHAR 394
           ++  E+  K   L G      PP   E   +++   AR
Sbjct: 364 KRYTEEILKARILEGLEPRTKPPKDGEVKSVSKKQKAR 401


>gi|326204124|ref|ZP_08193984.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325985635|gb|EGD46471.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 564

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 141/385 (36%), Positives = 223/385 (57%), Gaps = 9/385 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL LS +V  A+ D G+ + TPIQ ++IP +L+ +D+ G AQTGTGKT +F +P +
Sbjct: 4   LSFKDLTLSDEVQHAIADMGFEEATPIQSQSIPYILEGNDLIGQAQTGTGKTCAFGIPAV 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++     +   + L+L PTRELA Q  +      K  +    L +  G P + Q   L
Sbjct: 64  EKIDSH---IDSIQVLVLCPTRELAIQSCEELRNVLKYKDGIRILPVYGGQPIDRQIMAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   ++I TPGR++DH  R  L + +++++V+DEAD ML+MGF   I  I   VP  RQ
Sbjct: 121 KKRPQIIIGTPGRVMDHMRRKTLKLESLKMIVLDEADEMLNMGFREDIDTILEKVPEDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  E+ ++++ + ++P  I     +    T+                 +   L
Sbjct: 181 TILFSATMPKEILELTKKYQKDPVHI---KIAHKELTVPSIEQYYLEVKESAKLEVLSRL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              + +K  ++FCN KK V  L  SL+ +GFS  A+HG++ Q  R K++S F++G   ++
Sbjct: 238 IDTNDIKLSLVFCNTKKRVDELTASLQSRGFSAEALHGDMRQEHRDKVMSLFRKGNFDIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+ DV  VFN+D+PN  E Y+HRIGRTGRAGR GKAFT ++  ++  +  
Sbjct: 298 IATDVAARGIDVDDVEAVFNYDLPNDEEYYVHRIGRTGRAGRTGKAFTFISGREMYKLRD 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           I++  +  +  +     SLN   EK
Sbjct: 358 IQRYTKSTIVAMKP--PSLNEVEEK 380


>gi|91201974|emb|CAJ75034.1| similar to ATP-independent RNA helicase DbpA [Candidatus Kuenenia
           stuttgartiensis]
          Length = 449

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 152/454 (33%), Positives = 235/454 (51%), Gaps = 24/454 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F     +  +V  +   GYV PTPIQ++ IPL+L+  DV G+AQTGTGKTA+FVLP+L 
Sbjct: 3   NFQTFNFNSNIVAGIKSVGYVTPTPIQLQAIPLILEGTDVMGLAQTGTGKTAAFVLPILH 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +G       R L++ PTRELA QV  +F+  G   +L    + GG+    Q  +L  
Sbjct: 63  RLMQG--ERGKIRALVIVPTRELAEQVLQDFKTLGSKTSLRSISIYGGVSITQQINRLRS 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G ++++  PGR+LDH  +  + ++ +E+LV+DEAD M DMGF+P I+ I   +   RQTL
Sbjct: 121 GVEIVVACPGRLLDHMKQRTIELSRVEVLVLDEADHMFDMGFLPDIRKIIKCLSHKRQTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM DE++K+++  L  P  +++   +  +      +             + Q    
Sbjct: 181 LFSATMPDEIRKLAQEALTKPVTVQLGKTAPASTVKHALYPVKQHLKIPLLLKILQ---- 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ +IF   K    +L   L + G+   +  GN+ Q  R   L  F+ G  Q++VA
Sbjct: 237 HTDTQSVLIFTRTKYRAKSLGDRLIRAGYKATSFQGNLSQPQRQAALGGFRNGAYQILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI  + HV N+D+P+  E Y+HRIGRTGRA R G AFTLV ++D   +  IE
Sbjct: 297 TDIAARGIDISQISHVINYDIPDTPEAYVHRIGRTGRAARTGDAFTLVTEDDKAMVRGIE 356

Query: 362 KLIEKKVDWLN-GDLSSLNPPLE----------------KIDIAQHNHARKNNPIPQKST 404
            ++  +++     D     P L+                K+D  Q +  R    + +K  
Sbjct: 357 NILGSRIERYTLEDFDYSMPALKNTGTHAAPTQKKIVRNKMDWHQKSDTRGKTDL-KKDM 415

Query: 405 GFDRRKKNYSSQKSHIPLKESEKISKLQQDIQEN 438
                KK YS  K+      S  I    + ++  
Sbjct: 416 STSTMKKQYSFIKTKTTRPLSANIKTAPRPLKHK 449


>gi|323492253|ref|ZP_08097411.1| putative ATP-dependent RNA helicase RhlE [Vibrio brasiliensis LMG
           20546]
 gi|323313566|gb|EGA66672.1| putative ATP-dependent RNA helicase RhlE [Vibrio brasiliensis LMG
           20546]
          Length = 427

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 157/406 (38%), Positives = 226/406 (55%), Gaps = 11/406 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA    SP++V A+ + GY K TP+Q K IPL  + HD+   AQTGTGKTA+F LP++
Sbjct: 1   MSFASQNFSPEIVKALTECGYEKLTPVQQKAIPLARRGHDILANAQTGTGKTAAFALPIV 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +          +T   IL PTRELA QVA N + Y K  ++    + GG     Q K 
Sbjct: 61  QNILDSDKSANRHQTRAVILTPTRELAEQVASNIQDYTKYTDIKTVAIFGGKKMATQQKA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G DVL+ TPGR+++H     + + N+E LV DEADRMLDMGFI  I+ I S V    
Sbjct: 121 LEAGVDVLVATPGRLIEHIELNNVSLANLEFLVFDEADRMLDMGFIASIEKIMSGVTTKP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT + ++ K++   L+ PKR+ V   + TA+TI H       +  ++       
Sbjct: 181 QTMLFSATFSTQMNKLASEILRQPKRVSVARENVTADTIAHVVYPVEQERKRELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   K  ++F N K+    L   L+  G      HG+  Q +R + L  FK G  ++
Sbjct: 239 -IGRKNWKQVLVFVNYKETANELVKELKLDGIKAVLCHGDKAQSARRRALEEFKTGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+D+AARGLDI ++ HV NFD+P  AE+Y+HRIGRTGRAG+ G A + V +E+   + 
Sbjct: 298 MIATDVAARGLDIQNLPHVVNFDMPFLAEDYVHRIGRTGRAGQRGNAVSFVNREEELTLQ 357

Query: 359 AIEKLIEKKV--DWLNG----DLSSLNPPLEKIDIAQHNHARKNNP 398
            +E LI +++    L G    +  +L   +      ++   R NNP
Sbjct: 358 QVETLIGQRIYRKELEGYEPKNRDALLEKMHSKPAFKNRKTRTNNP 403


>gi|254229671|ref|ZP_04923081.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262395214|ref|YP_003287068.1| ATP-dependent RNA helicase SrmB [Vibrio sp. Ex25]
 gi|151937792|gb|EDN56640.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262338808|gb|ACY52603.1| ATP-dependent RNA helicase SrmB [Vibrio sp. Ex25]
          Length = 407

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 126/371 (33%), Positives = 199/371 (53%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L L   ++ A+ + GY +PT IQ + IP  L   D+   A TGTGKTA+FVLP L 
Sbjct: 4   TFAELDLDQNLLEAIEEMGYKRPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    R   P  + IL PTRELA Q+AD      KN  L +  + GG+ ++     L 
Sbjct: 64  YLQDFPRRKPGPARILILTPTRELAMQIADQARALAKNTKLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+ ++ +  +     IE L++DEADRMLDMGF P +  +++   + +QT
Sbjct: 124 TTQDIVVATPGRLKEYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     ++  + + L +P  I+  +P    + I   +        K         
Sbjct: 184 LLFSATLEGKGVEGFTADLLNDPAEIDAKSPLRERKKIAQWYHRADDAEHKLE---LLKH 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  I+F   ++ +  L   LE        I G + Q  R   +S F++GT+ ++
Sbjct: 241 IITQQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFRDGTVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A ++V   D   +D 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR 360

Query: 360 IEKLIEKKVDW 370
           + + +++ +  
Sbjct: 361 VARYVKEDIKE 371


>gi|269963602|ref|ZP_06177925.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831615|gb|EEZ85751.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 430

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 156/406 (38%), Positives = 234/406 (57%), Gaps = 11/406 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P+VV A+ + GY K TPIQ K IP+  + HD+   AQTGTGKTA+F LPM+
Sbjct: 1   MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARRGHDIFATAQTGTGKTAAFSLPMI 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L               I+ PTRELA Q+ADN + Y K  NL+VA + GG    +Q   
Sbjct: 61  QRLLDSGRNASRKTARALIMAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMPSQISA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H  +G + + NIE LV DEADR+LDMGFI  ++ I   V    
Sbjct: 121 LENGVDILVATPGRLEEHIEQGNVSVANIEFLVFDEADRILDMGFINAVRKIMLDVDTDP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L  ++ + L+ PKRIEV   ++TA+T+ H       +   +       
Sbjct: 181 QIMMFSATTSTQLNVLARDILRKPKRIEVERANTTAQTVAHVLYPVDQERKTELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   K  ++F N K+   ++   L+  G      HG+  Q +R + L  FK G +++
Sbjct: 239 -IGRKNWKQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V +E+   + 
Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVV 357

Query: 359 AIEKLIE---KKVDWLNGDLSSLNPPLEKIDIA---QHNHARKNNP 398
            +E LI+   ++++    +       +EK++     ++   R+NNP
Sbjct: 358 QVENLIQQHIRRIELAGYEPKQRESYIEKLNSKPAFKNRQGRRNNP 403


>gi|226940616|ref|YP_002795690.1| ATP-dependent RNA helicase protein [Laribacter hongkongensis HLHK9]
 gi|226715543|gb|ACO74681.1| Putative ATP-dependent RNA helicase protein [Laribacter
           hongkongensis HLHK9]
          Length = 520

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 157/466 (33%), Positives = 248/466 (53%), Gaps = 22/466 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           FA LGL  ++V A+       PTP+Q + +PL+L   D+   AQTGTGKTA+F+LP +  
Sbjct: 6   FAALGLDARLVHALEQHNITTPTPVQAEALPLLLSGRDLMASAQTGTGKTAAFLLPALSR 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
           +L +  AR R PR L+L PTREL  QVA   +++        VA +IGG  F  QN+ L 
Sbjct: 66  LLVEPVARSRGPRILVLAPTRELVQQVAKAAQEFSTKIPRVNVASVIGGTSFRTQNQMLT 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R  +V++ TPGR++D    G++  + +E+LV+DEADRMLDMGF   +  I S +P  RQT
Sbjct: 126 RPIEVMVATPGRLMDQMRSGRIDFSRLEMLVLDEADRMLDMGFSEDVMEIASQLPKARQT 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             F+ATMT  +   ++  L  P +IE+   ++  E IE   +       K+   L + + 
Sbjct: 186 AFFTATMTRRVLDFADELLTEPAKIEIAAQTAKHENIEQQAIFVDDIDHKRR--LVRHIL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ  +K  I+F   K++   L   L   G    A+HG++ QR R + L+  + G  +++V
Sbjct: 244 SQPDVKQAIVFVATKRDCDTLADELIVDGIRADALHGDMQQRDRTRTLTRLRSGQTEVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV NFD+P  AE+Y+HR+GRTGRAG  G A +LV ++D   +  I
Sbjct: 304 ATDVAARGIDVAGISHVINFDLPRFAEDYVHRVGRTGRAGATGTAVSLVGRQDAFPLKKI 363

Query: 361 EKLIEKK--VDWLNGDLSSLNPPLEKIDIAQ---------------HNHARKNNPIPQKS 403
           E+   +K  V  + G ++   P   +                     ++  +++      
Sbjct: 364 ERFTGQKLIVTEIEGMIARFKPQERREGGGGRGGFGGKPRHGNGQGRSYGDRSSAPRGGF 423

Query: 404 TGFDRRKKNYSSQKSHIPLKE-SEKISKLQQDIQENDADSLGFRGN 448
            G  +R++    ++   P ++     S   +D +  D  S   RG+
Sbjct: 424 GGHQQRREGGDDRRQFAPRQDGDAHRSGTARDGRRFDDRSSAPRGD 469


>gi|134113286|ref|XP_774667.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257311|gb|EAL20020.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 559

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 207/379 (54%), Gaps = 2/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    ++  +   G+  P+ IQ +  P+ L   D+  IA+TG+GKT SF LP + 
Sbjct: 130 TFEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLPAMV 189

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  LIL PTRELA Q+     K+G++  +    + GG P   Q + L
Sbjct: 190 HINAQPLLAPGDGPIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQIRDL 249

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG ++ + TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 250 QRGVEICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQ 309

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   E+Q+++ +FL +  ++ + +   TA       V     + K+  LL  L 
Sbjct: 310 TLLFSATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSHLE 369

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +IF   K+   +L   L   G+   AIHG+  Q  R  +L+ FK G   +M
Sbjct: 370 KISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIM 429

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ D+G+V N+D PN  E+YIHRIGRTGRAGR G ++T    ++ K    
Sbjct: 430 LATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKAARE 489

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + +++ +    +  +L  +
Sbjct: 490 LVQILRESKADIPPELEEM 508


>gi|134113284|ref|XP_774668.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257312|gb|EAL20021.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 546

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 207/379 (54%), Gaps = 2/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    ++  +   G+  P+ IQ +  P+ L   D+  IA+TG+GKT SF LP + 
Sbjct: 117 TFEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLPAMV 176

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  LIL PTRELA Q+     K+G++  +    + GG P   Q + L
Sbjct: 177 HINAQPLLAPGDGPIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQIRDL 236

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG ++ + TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 237 QRGVEICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQ 296

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   E+Q+++ +FL +  ++ + +   TA       V     + K+  LL  L 
Sbjct: 297 TLLFSATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSHLE 356

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +IF   K+   +L   L   G+   AIHG+  Q  R  +L+ FK G   +M
Sbjct: 357 KISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIM 416

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ D+G+V N+D PN  E+YIHRIGRTGRAGR G ++T    ++ K    
Sbjct: 417 LATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKAARE 476

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + +++ +    +  +L  +
Sbjct: 477 LVQILRESKADIPPELEEM 495


>gi|304395765|ref|ZP_07377648.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304357059|gb|EFM21423.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 457

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 160/390 (41%), Positives = 233/390 (59%), Gaps = 6/390 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                        R  R LIL PTRELAAQV +N   Y K  +L   ++ GG+    Q  
Sbjct: 61  QKLSATATPIRGRRPVRALILTPTRELAAQVGENVSDYSKYLSLRSMVVFGGVSINPQMV 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G D+L+ TPGR+LD   +  + ++ +E+LV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDILVATPGRLLDLAQQNAVDLSQVEVLVLDEADRMLDMGFIHDIRRVLARLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++E  L NP+ IEV   ++ +E +            K+   L  
Sbjct: 181 RQNLLFSATFSDEIKGLAEKLLTNPEMIEVARRNTASEQV---AQQVAFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +   +  ++F   K    +L   L K G S  AIHGN  Q +R + L++FK G I+
Sbjct: 238 QLIGEGNWQQVLVFTRTKHGANHLAEQLGKDGISAAAIHGNKSQGARTRALADFKSGGIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN AE+Y+HRIGRTGRA   G A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGVALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
             IE+L+++++  L  +    +P ++   I
Sbjct: 358 RDIERLLKREIPRLAVEGYEPDPSIKAEPI 387


>gi|89072916|ref|ZP_01159473.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89051438|gb|EAR56893.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 654

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 141/378 (37%), Positives = 216/378 (57%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L L+  ++ A+ + G+V PTPIQ  +IPL+L   D  G AQTGTGKTA+F LP+L 
Sbjct: 33  EFRQLDLADTLLSALDNMGFVAPTPIQAASIPLLLTGTDALGKAQTGTGKTAAFSLPVLN 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKLE 120
            ++  + +   P+ +++ PTRELA QVA   +  G+N      L I G      Q + L+
Sbjct: 93  KVDLSQHK---PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRALK 149

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ D  +R +L ++ +   V+DEAD ML MGF+  +  I    P T Q 
Sbjct: 150 NGAHIVVGTPGRVKDLISRKQLQLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQR 209

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++++ + FL+NP RI+V   + T   +E  F         +        +
Sbjct: 210 VLFSATMPPIVKEIVDRFLRNPARIDVAGENRTVSKVEQQFWVVKGVEKDEAMSRLLETE 269

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D     I+F   +++   L   L  +GF   A+HG+I Q  R + + + K G I ++V
Sbjct: 270 DTD---ASIVFVRTRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILV 326

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  I
Sbjct: 327 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRAGKAILLVRTNQIRMLRTI 386

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E++ + +++ +   L  L
Sbjct: 387 ERVTKSRMEEIQLPLRDL 404


>gi|325261674|ref|ZP_08128412.1| ATP-dependent RNA helicase, DEAD/DEAH family [Clostridium sp. D5]
 gi|324033128|gb|EGB94405.1| ATP-dependent RNA helicase, DEAD/DEAH family [Clostridium sp. D5]
          Length = 527

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 143/419 (34%), Positives = 229/419 (54%), Gaps = 20/419 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL P++V AV   G+ + +PIQ K IP++    D+ G AQTGTGKTA+F +P+L  
Sbjct: 6   FEDLGLCPEIVKAVKKMGFEEASPIQAKAIPVMKSGKDIIGQAQTGTGKTAAFGIPLLEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +E    +++     +L PTRELA QVA+      K  +    L I  G     Q + L+ 
Sbjct: 66  IEPKNKKLQAV---VLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVTQIRSLKS 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR++DH  R  + M+ +  +V+DEAD ML+MGF   I+ I   VP  RQT+
Sbjct: 123 GTQLIIGTPGRVMDHMRRKTIKMDEVHTIVLDEADEMLNMGFREDIETILEGVPEERQTV 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +  +++ F +N + ++V     T   IE  +        K    +   L  
Sbjct: 183 LFSATMPQAILDITKRFQKNAEIVKVTKKELTVPNIEQYYYEVKP---KSKEEVLARLLD 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + K  ++FCN KK V  L + L  +G+    +HG++ Q+ R +++  F+ G   ++VA
Sbjct: 240 IYSPKLSVVFCNTKKQVDILVNGLLGRGYFAAGLHGDLKQQQRDRVMQGFRSGKTDILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ +V  VFN+D+P   E Y+HRIGRTGRAGR G++F+ V+ +++  +  I+
Sbjct: 300 TDVAARGIDVEEVEAVFNYDLPQDDEYYVHRIGRTGRAGREGRSFSFVSGKEVYKLKEIQ 359

Query: 362 KLIEKKV-------------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           +  + K+               +   L  ++  +E  D+ ++  A +N       T  D
Sbjct: 360 RYCKTKIYAQKVPSLNDVANTKMENILGEIDNIIETEDLTKYLQAIENKVNESDYTAMD 418


>gi|228933771|ref|ZP_04096617.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228825843|gb|EEM71630.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 451

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 143/420 (34%), Positives = 230/420 (54%), Gaps = 11/420 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 3   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 63  KIDPESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T  TIE           +      + + 
Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQ---RVIETTDRAKPDALRFVM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EK +   +     +     P ++++D       +       +    D R+ + S  K   
Sbjct: 357 EKTLGAPIQREIIE----QPKIKRVDENGKPLPKPAPKKSGEYRQRDSREGSRSGSKGRT 412


>gi|224286258|gb|ACN40838.1| unknown [Picea sitchensis]
          Length = 411

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 196/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    Q  DV   AQ+GTGKTA+F   +L 
Sbjct: 39  TFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCQGLDVIQQAQSGTGKTATFCSGILQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L      V   + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 99  QLNYN---VPECQALVLAPTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLRILQA 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 156 GVHVVVGTPGRVYDMLRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPTNLQVG 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+ NP RI V     T E I+  +V    +  K   L       
Sbjct: 216 VFSATMPPEALEITRKFMTNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDL--YE 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 274 TLAITQSVIFINTRRKVDWLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V K+D + +  I+
Sbjct: 334 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLQDIQ 393

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ L  +++ L
Sbjct: 394 RFYNVVIEELPNNVADL 410


>gi|195356214|ref|XP_002044575.1| GM20179 [Drosophila sechellia]
 gi|194132206|gb|EDW53828.1| GM20179 [Drosophila sechellia]
          Length = 1214

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 137/447 (30%), Positives = 230/447 (51%), Gaps = 12/447 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 502 TWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 561

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +           +I+ PTREL  Q+  +  K+ K+  L    + GG     Q  +L
Sbjct: 562 HILDQPSMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAEL 621

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 622 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRP 681

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   L+ P  + V   S   + +E            K   L 
Sbjct: 682 DRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKDVEQNV--VILNDDAKFFKLL 739

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +FK G +
Sbjct: 740 ELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKV 799

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  E  ++
Sbjct: 800 RLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRY 859

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN-----HARKNNPIPQKSTGFDRRKK 411
              I + ++     +  +L +L    + +  A+                     F+  K+
Sbjct: 860 AGDIIRAMDLSGTLIPAELQTLWMEYKALQEAEGKTVHTGGGFSGKGFKFDEQEFNAAKE 919

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQEN 438
           +   QK+ + L +S+    ++QDI + 
Sbjct: 920 SKKLQKAALGLADSDDEEDIEQDIDQQ 946


>gi|89900953|ref|YP_523424.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
 gi|89345690|gb|ABD69893.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
          Length = 574

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 157/410 (38%), Positives = 240/410 (58%), Gaps = 10/410 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AVL+ GY  PTPIQ + IP VL  HD+ G AQTGTGKTA+FVLPML
Sbjct: 1   MKFEELNLAPAIIKAVLEQGYETPTPIQAQAIPAVLDGHDLLGGAQTGTGKTAAFVLPML 60

Query: 61  TILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L +      +      R L+L PTRELAAQV ++ + YGK   LT  ++ GG+    Q
Sbjct: 61  HKLSQSEAARNKFGGIGIRALVLTPTRELAAQVEESVQTYGKYVELTSTVIFGGVGMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             ++++G D+L+ TPGR+LD   +G L ++ ++ILV+DEADRMLDMGFI  ++ + ++VP
Sbjct: 121 ISRVKKGVDILVATPGRLLDLLQQGVLDLSQVQILVLDEADRMLDMGFIHDVKKVLAVVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT ++E+++++   L++P  I+V   ++T + I            K     
Sbjct: 181 KDKQSLLFSATFSEEIRELAATLLKSPLTIQVTPRNTTVQRITQLIHPVGRGKKKAL--- 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              +  +      ++F   K    N+   L K G +  A+HGN  Q +R + L+ FK G 
Sbjct: 238 LAHIVQERNWSQVLVFTRTKFGANNVAEFLTKSGINAMALHGNKSQAARTQALAGFKSGD 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ +VA+D+AARG+DI D+ HV N+D+PN  E+Y+HRIGRTGRAG  G A  LV  ++  
Sbjct: 298 IRALVATDIAARGIDIDDLPHVVNYDIPNVCEDYVHRIGRTGRAGADGAAVNLVCLDEEG 357

Query: 356 HIDAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
            + AIE+  ++ ++   + G +       E I + +          P + 
Sbjct: 358 FMQAIERFTKQDIEVQIVEGFMPEPGEQAEPIAMGRQTIWGGAGKPPSRD 407


>gi|165869135|ref|ZP_02213795.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167641387|ref|ZP_02399638.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170704569|ref|ZP_02895035.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|177649201|ref|ZP_02932203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190565289|ref|ZP_03018209.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|229603661|ref|YP_002866798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254685050|ref|ZP_05148910.1| ATP-dependent RNA helicase [Bacillus anthracis str. CNEVA-9066]
 gi|254722456|ref|ZP_05184244.1| ATP-dependent RNA helicase [Bacillus anthracis str. A1055]
 gi|254737496|ref|ZP_05195199.1| ATP-dependent RNA helicase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254743317|ref|ZP_05201002.1| ATP-dependent RNA helicase [Bacillus anthracis str. Kruger B]
 gi|254751811|ref|ZP_05203848.1| ATP-dependent RNA helicase [Bacillus anthracis str. Vollum]
 gi|254760330|ref|ZP_05212354.1| ATP-dependent RNA helicase [Bacillus anthracis str. Australia 94]
 gi|164715861|gb|EDR21378.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167510664|gb|EDR86059.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170130370|gb|EDS99231.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|172084275|gb|EDT69333.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190563316|gb|EDV17281.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|229268069|gb|ACQ49706.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
          Length = 447

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 145/440 (32%), Positives = 238/440 (54%), Gaps = 12/440 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 3   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 63  KIDPESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+  +++K+++ ++  P+ I+V +   T +TIE           +      + + 
Sbjct: 180 MLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFVM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EK +   +     +     P ++++D       +       +    D R+ + S  K   
Sbjct: 357 EKTLGAPIQREIIE----QPKIKRVDENGKPLPKPAPKKSGEYRQRDSREGSRSGSKGRT 412

Query: 421 PLKESEKISKLQQDIQENDA 440
              +S   S+ + +   N  
Sbjct: 413 -RNDSRNSSRNENNRSFNKP 431


>gi|253996648|ref|YP_003048712.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera
           mobilis JLW8]
 gi|253983327|gb|ACT48185.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8]
          Length = 459

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 156/453 (34%), Positives = 258/453 (56%), Gaps = 12/453 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ LGL+P+++ A+ ++GY  PTPIQ + IP+ L   D+   AQTGTGKTA+F LP+L 
Sbjct: 11  SFSTLGLAPELLRALTESGYTTPTPIQAQAIPVALAGGDLMAGAQTGTGKTAAFSLPLLQ 70

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA QV ++ + Y K+  L   ++ GG+  + Q 
Sbjct: 71  KLLPLANNSTSPAKHPVRALILTPTRELAIQVEESVKAYAKHTQLRSLVVYGGVDIKTQT 130

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L+ G +VL+ TPGR+LDH  +  L +N +++LV+DEADRMLDMGF+P ++ I +L+P 
Sbjct: 131 PHLKTGVEVLVATPGRLLDHIEQKTLQLNQVQMLVLDEADRMLDMGFMPDLKRILALLPK 190

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ L+FSAT ++E++K++++FL  P+ IEV   ++T + +            +   +  
Sbjct: 191 QRQNLMFSATFSNEIKKLADDFLTKPQLIEVARSNATNDNVTQKVYQVAQSDKEALLIQL 250

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +   K  I+F   K     L  SL ++G +  AIHG+ +Q+ R+K L  FK GT+
Sbjct: 251 L---READAKQVIVFTKTKLTASRLSRSLVREGIAADAIHGDKNQQERIKALDAFKAGTV 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             ++A+D+AARGLDI ++  V N+++P+  E+Y+HRIGRTGRAG  G A + V+ ++ K+
Sbjct: 308 SALIATDVAARGLDISELPMVINYEIPSAPEDYVHRIGRTGRAGALGVAISFVSDDEEKY 367

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  IEKLI++++     +  +L+ P  ++     +H     P+ ++     ++  +    
Sbjct: 368 LVEIEKLIKRQI---TKETVTLDRPSARVRSHASSHKEAAAPVAKRMPA-KKKSADPWFD 423

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNM 449
           K + P  +  K +   + +    A      G +
Sbjct: 424 KPYEPNAQRGKSTTGNKAVITKKAPVAALLGGL 456


>gi|91206539|sp|Q59LU0|DBP2_CANAL RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 562

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 130/381 (34%), Positives = 205/381 (53%), Gaps = 3/381 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
            F + G    V+  V D G+ KPTPIQ +  P+ L   D+ GIA TG+GKT S+ LP  +
Sbjct: 128 TFDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIV 187

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P  L+L PTRELA Q+     K+GK+  +    + GG P   Q + L
Sbjct: 188 HINAQPQLQYGDGPIVLVLAPTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQIRDL 247

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG ++ I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 248 ARGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 307

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+Q+++ ++L +P ++ + +    A       V    ++SK+  L++ L 
Sbjct: 308 TLMWSATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVKHLE 367

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            + +   N I+     K   +   +     G+   AIHG+ +Q  R  +L  F++G   +
Sbjct: 368 SALNEKDNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSI 427

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARG+D+  + HV N+D+P   E+Y+HRIGRTGR G  G A +   + + K   
Sbjct: 428 MVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGG 487

Query: 359 AIEKLIEKKVDWLNGDLSSLN 379
            + K++ +    +  +L   +
Sbjct: 488 DLCKIMREANQTVPPELQRFD 508


>gi|163800373|ref|ZP_02194274.1| hypothetical protein 1103602000595_AND4_06819 [Vibrio sp. AND4]
 gi|159175816|gb|EDP60610.1| hypothetical protein AND4_06819 [Vibrio sp. AND4]
          Length = 430

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 155/408 (37%), Positives = 237/408 (58%), Gaps = 15/408 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P+VV A+ + GY K TPIQ K IP+  +  D+   AQTGTGKTA+F LPM+
Sbjct: 1   MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARKGFDIFATAQTGTGKTAAFSLPMI 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +    V        ++ PTRELA Q+ADN + Y K  +L+VA + GG    +Q   
Sbjct: 61  QQLLESSRSVSRKTARALVMAPTRELAEQIADNIKAYTKYTDLSVAAIFGGRKMSSQISA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H  +G + + NI+ LV DEADR+LDMGFI  ++ I   V    
Sbjct: 121 LESGVDILVATPGRLEEHIEQGNVSVANIDFLVFDEADRILDMGFIHAVRKIMLDVDTNP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L  ++++ L  PKRIEV   ++TA+TI H       +   +       
Sbjct: 181 QIMMFSATTSSQLNLLAKDILHKPKRIEVERANTTAQTIAHVLYPVDQERKTELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F N K+   ++   L+  G      HG+  Q +R + L  FK G  ++
Sbjct: 239 -IGRKNWRQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V +E+   + 
Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVV 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPP-----LEKIDIA---QHNHARKNNP 398
            +E LI++++  +  +L+   P      +EK++     ++   R+NNP
Sbjct: 358 QVENLIQQRIRRI--ELAGYEPKQRESYIEKLNSKPAFKNRQGRRNNP 403


>gi|67623509|ref|XP_668037.1| eukaryotic initiation factor 4A-3 (eIF4A-3) (eIF-4A-3)
           [Cryptosporidium hominis TU502]
 gi|54659212|gb|EAL37800.1| eukaryotic initiation factor 4A-3 (eIF4A-3) (eIF-4A-3)
           [Cryptosporidium hominis]
          Length = 395

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 192/377 (50%), Gaps = 4/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++GL   ++  +   G+  P+ IQ + I  ++Q  D    +Q+GTGKT  F +  L 
Sbjct: 22  TFEEMGLKDNLLRGIYSYGFEFPSAIQRRAIVPIIQGRDTIIQSQSGTGKTCVFSVGALE 81

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I  K +  V  P  LIL PTRELA Q        G   ++     IGG   +   K    
Sbjct: 82  ICSKSKENV--PMVLILSPTRELAEQSEKVCTSIGDYLDIRTHSCIGGKKLKDDIKAFNS 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+L    +G L    I++L+IDEAD M D GF   + +I   +P   QT+
Sbjct: 140 GVSIISGTPGRVLQMIEQGYLSTKKIKLLIIDEADEMFDYGFKTQVYDIYKYLPPRIQTV 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+ D++  +++ F++NP +I    P       +        +  K        L  
Sbjct: 200 LVSATLPDDILVMAQKFMRNPLQIL--VPKEEVSLDKIRQYHVQVEEEKWKFETLCDLYD 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   IIFCN K  V  L   + +  F+V  +HG++ Q +R +IL  F+EG  ++++ 
Sbjct: 258 TLTVTQSIIFCNTKNKVEWLSKKMMENHFTVSFVHGDLPQVTREEILREFREGKTRVLIT 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+D+  V  V N+D+P   E YIHRIGR+GR GR G A  L+ KED   +  +E
Sbjct: 318 TDLWGRGIDVQQVNLVVNYDLPINKELYIHRIGRSGRFGRSGIAINLITKEDESMLSLLE 377

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    K+  L G++ +L
Sbjct: 378 RFYSIKISKLPGNVKNL 394


>gi|304387245|ref|ZP_07369442.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria meningitidis ATCC
           13091]
 gi|304338733|gb|EFM04846.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria meningitidis ATCC
           13091]
          Length = 457

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 159/447 (35%), Positives = 252/447 (56%), Gaps = 29/447 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +      +
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNL---LE 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 242 RLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           ++I++L   K+             +E+I+  +     +    P+K    + R++N     
Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRY--- 406

Query: 418 SHIPLKESEKISKLQQDIQENDADSLG 444
                 ES K  + +    EN A+  G
Sbjct: 407 ------ESAKAQREKNTRPENAANDAG 427


>gi|30262474|ref|NP_844851.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47527766|ref|YP_019115.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185310|ref|YP_028562.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|167632590|ref|ZP_02390917.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170687052|ref|ZP_02878271.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|227814717|ref|YP_002814726.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|30257105|gb|AAP26337.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47502914|gb|AAT31590.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49179237|gb|AAT54613.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|167532888|gb|EDR95524.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170669103|gb|EDT19847.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|227002434|gb|ACP12177.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
          Length = 450

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 145/440 (32%), Positives = 238/440 (54%), Gaps = 12/440 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+  +++K+++ ++  P+ I+V +   T +TIE           +      + + 
Sbjct: 183 MLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EK +   +     +     P ++++D       +       +    D R+ + S  K   
Sbjct: 360 EKTLGAPIQREIIE----QPKIKRVDENGKPLPKPAPKKSGEYRQRDSREGSRSGSKGRT 415

Query: 421 PLKESEKISKLQQDIQENDA 440
              +S   S+ + +   N  
Sbjct: 416 -RNDSRNSSRNENNRSFNKP 434


>gi|302840989|ref|XP_002952040.1| hypothetical protein VOLCADRAFT_81727 [Volvox carteri f.
           nagariensis]
 gi|300262626|gb|EFJ46831.1| hypothetical protein VOLCADRAFT_81727 [Volvox carteri f.
           nagariensis]
          Length = 622

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 134/380 (35%), Positives = 193/380 (50%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F  +G  P ++  +  AG+  PTPIQ +  P+ L   D+  IA+TG+GKT  F+LP ML
Sbjct: 123 TFESVGFPPDILDEIRRAGFKYPTPIQAQAWPIALSGRDLVAIAKTGSGKTCGFLLPGML 182

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I +  +     P  L+L PTRELA Q+    +K+G++  +    + GG P   Q + ++
Sbjct: 183 HIQQTRKDPRSGPTLLVLAPTRELAVQIKTEADKFGRSSGIRNTCVYGGAPKGPQLRDIQ 242

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  ++I TPGR+ D    G++ +  +  LV+DEADRMLDMGF P IQ I   +P  RQT
Sbjct: 243 HGVQIVIATPGRLNDFLEAGQVRLQQVSYLVLDEADRMLDMGFEPQIQRIVRTLPRQRQT 302

Query: 181 LLFSATMTDELQKVSENF--LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           L FSAT   E++ ++  F   Q                            S +       
Sbjct: 303 LFFSATWPREVKHIAAQFVVNQTVHVFIGGVEEKLVANKSITQHVLVLNSSHEKFGELSR 362

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +         II     K + +       + F   AIHG+  Q  R  +L  FK+G   +
Sbjct: 363 IIRSKPAGTRIIIFCTTKRMCDQLSYQMSREFRAAAIHGDKKQSERDYVLQAFKDGRTPI 422

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIP+V  V NFD P   E+YIHRIGRTGRAG  G+AFT +  ED KH  
Sbjct: 423 LVATDVAARGLDIPNVAAVVNFDFPTGTEDYIHRIGRTGRAGATGEAFTFMTGEDAKHAR 482

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + +++ +    +   L  L
Sbjct: 483 DLIQVMREAQQTVPPQLEQL 502


>gi|194868558|ref|XP_001972305.1| GG13958 [Drosophila erecta]
 gi|190654088|gb|EDV51331.1| GG13958 [Drosophila erecta]
          Length = 786

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 139/411 (33%), Positives = 218/411 (53%), Gaps = 4/411 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   G   +++ AV  A Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ PML 
Sbjct: 268 SFGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLM 327

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  LIL PTREL+ Q+ +  +K+GK YNL V    GG     Q+K L
Sbjct: 328 HVMDQRQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKAL 387

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+GA++++ TPGR++D        +  +  LV+DEADRM  MGF P +++I + V   RQ
Sbjct: 388 EQGAEIIVATPGRMIDMVKMKATNLRRVTYLVLDEADRMFHMGFEPQVRSICNHVRPDRQ 447

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT    +++++ + L +P RI     +   + I            K   LL  L+
Sbjct: 448 CLMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLV 507

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +      + +IF  +K +   + ++L  + ++   +HG++DQ  R K+++ FK     ++
Sbjct: 508 KFLSEG-SVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDIL 566

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + +V N+D     E + HRIGRTGRAG  G AFTLV  +D +    
Sbjct: 567 VATDVAARGLDIPHIKNVVNYDTARDIETHTHRIGRTGRAGEKGNAFTLVTDKDKEFAGH 626

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST-GFDRR 409
           + + +E     +  DL  L         ++    +   P    +  G+  R
Sbjct: 627 LVRNLEGADQQVPDDLMELAMKSSWFRSSRFKQGKSKRPANTHTGLGYRER 677


>gi|260802690|ref|XP_002596225.1| hypothetical protein BRAFLDRAFT_276047 [Branchiostoma floridae]
 gi|229281479|gb|EEN52237.1| hypothetical protein BRAFLDRAFT_276047 [Branchiostoma floridae]
          Length = 924

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 143/451 (31%), Positives = 239/451 (52%), Gaps = 19/451 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + +   G+S KV+  +   G+ KPTPIQ + IP+++   D+ GIA+TG+GKT +F++PM 
Sbjct: 237 LHWVQSGVSKKVLACLKKHGFEKPTPIQAQAIPVIMSGRDMIGIAKTGSGKTLAFLIPMF 296

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                ++       P  +I+ PTRELA Q+    +K+ ++ NL V  + GG     Q  +
Sbjct: 297 RHILDQRPLEDTEGPIGVIMTPTRELALQITKECKKFTRHMNLKVVCVYGGTGISEQIAE 356

Query: 119 LERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           L+RGA+++ICTPGR++D     N     +     LV+DEADRM DMGF P + +I + V 
Sbjct: 357 LKRGAEIIICTPGRMIDMLAANNGRVTNLRRCTYLVLDEADRMFDMGFEPQVMHIVNSVR 416

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT++FSAT    ++ ++   LQ P  ++V   S               +  +K   L
Sbjct: 417 PDRQTVMFSATFPRNMEALARKVLQKPIEVQVGGRSVVCSD--VEQHVIVLEEEQKFFKL 474

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +LL +     + ++F  +++    L   L K  +S  ++HG IDQ  R  I+++FK G 
Sbjct: 475 LELLGNYQEKGSVLVFVERQEVADTLLKDLLKAAYSCLSLHGGIDQYDRDSIINDFKSGN 534

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+L+VA+ +AARGLD+  +  V N+D PN  E+Y+HR+GRTGRAG  G A+T + ++  +
Sbjct: 535 IRLLVATSVAARGLDVKQLILVINYDCPNHYEDYVHRVGRTGRAGNKGYAYTFITEDQGR 594

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH--NHARKNNPIPQKSTGFDRRKKNY 413
           +   + K +E         LS    P E +++     N  +      +K++GF  +   +
Sbjct: 595 YAGDVIKALE---------LSERPVPEEVLNLWTEYVNRQKAEGKAVKKTSGFTGKGFKF 645

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLG 444
              +  +   E  K+ K    +Q++D +   
Sbjct: 646 DETEQAL-ADERRKLQKAALGLQDSDEEDAA 675


>gi|145640383|ref|ZP_01795967.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|145274969|gb|EDK14831.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.4-21]
          Length = 402

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 134/385 (34%), Positives = 206/385 (53%), Gaps = 4/385 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKTA+F+LP + 
Sbjct: 5   QFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++       
Sbjct: 65  HLLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QT
Sbjct: 125 TNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL       L N     V+   S  E  +      +A  ++    L     
Sbjct: 185 LLFSATLEGELLVDFAERLLNDPVK-VDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +  GI+F  ++++   L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 244 ETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPPLE 383
           ++   +  K   L G      PP +
Sbjct: 364 KRYTGEILKARILAGLEPRTKPPKD 388


>gi|302685145|ref|XP_003032253.1| hypothetical protein SCHCODRAFT_82297 [Schizophyllum commune H4-8]
 gi|300105946|gb|EFI97350.1| hypothetical protein SCHCODRAFT_82297 [Schizophyllum commune H4-8]
          Length = 488

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 210/379 (55%), Gaps = 2/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++G    ++  +   G+  PT IQ ++ P+ L   DV  IAQTG+GKT SF LP + 
Sbjct: 62  SFDEVGFPEYLMATIRAQGFPAPTAIQCQSWPMALSGRDVVAIAQTGSGKTISFALPAML 121

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      +    P  L+L PTRELA Q+     K+G N  +    + GG P   Q + L
Sbjct: 122 HINAQPLLSPGDGPIALVLAPTRELAVQIQQECTKFGSNSRIRNTAIYGGAPKGPQIRDL 181

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +V+I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 182 QRGVEVVIATPGRLIDMLETGKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQ 241

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT   ++QK++ +FL++  ++ + +    A           + + K+  L++ L 
Sbjct: 242 TLMFSATWPKDVQKLANDFLKDFIQVNIGSMELAANHNITQITEVCSDFEKRNKLIKHLD 301

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q        +IF   K+   ++   L + G+   AIHG+ +QR R  +L  FK G   ++
Sbjct: 302 QISSENAKVLIFVGTKRVADDITRYLRQDGWPALAIHGDKEQRERDWVLGEFKAGRSPIL 361

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ D+G+V N+D PN  E+YIHRIGRTGRAG  G A+T    E+ K    
Sbjct: 362 IATDVASRGLDVKDIGYVINYDFPNNCEDYIHRIGRTGRAGAKGTAYTYFTTENAKSARE 421

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +  ++ +    +  +L  +
Sbjct: 422 LVSILTEAKQVVPPELQEM 440


>gi|294634522|ref|ZP_06713057.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda ATCC 23685]
 gi|291092036|gb|EFE24597.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda ATCC 23685]
          Length = 643

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 134/378 (35%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+  ++ A+ D GY KP+PIQ   IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 12  TFADLGLAAPIIEALNDLGYEKPSPIQAACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLN 71

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     ++ P+ L+L PTRELA QVA+    + K+ +    + +  G  ++ Q + L 
Sbjct: 72  NIDPS---LKAPQVLVLAPTRELAVQVAEAMTDFSKHLHGINVVALYGGQRYDVQLRALR 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L + ++  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 129 QGPQIVVGTPGRLLDHLKRGTLSLASLRGLVLDEADEMLRMGFIEDVETIMAQIPAEHQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F+  P+ + + +  +T   I   +   Y     +         
Sbjct: 189 ALFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVYGMRKNEA---LVRFL 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G+S  A++G+++Q  R + L   K+G + +++
Sbjct: 246 EAEDFDAAIIFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDILI 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 306 ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRNI 365

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 366 ERTMKLTIPEVELPNAEL 383


>gi|241662507|ref|YP_002980867.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12D]
 gi|240864534|gb|ACS62195.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
          Length = 627

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 147/388 (37%), Positives = 224/388 (57%), Gaps = 23/388 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           FA LGL  ++V A+ +  Y  PTP+Q + IP  L   D+   +QTG+GKTA+F+LP    
Sbjct: 35  FAALGLDDRIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQR 94

Query: 60  -----------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNL 101
                                 + R     P  L+L PTRELA QV     +YG++   +
Sbjct: 95  ISEQPEPQRPRMDGPPQRMKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRRI 154

Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
             A ++GG+P+  Q   L R  D++I TPGR+LDH + G++ ++ +++LV DEADRMLDM
Sbjct: 155 VCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDM 214

Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
           GF   I+ I    P TRQ L+FSATM   +++++E  ++ P+RIE+         IE   
Sbjct: 215 GFSDDIEAIVGATPATRQMLMFSATMDRRIEQLAERMMREPQRIEIAAAKVDQSNIEERL 274

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
             T     K+   L   L    ++K  I+F   K++  +L   L + GFS  A+HG++ Q
Sbjct: 275 HFTDDMSHKQ--QLLDHLLRDASLKQAIVFTATKRDADSLAERLTEHGFSAGALHGDMHQ 332

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
            +R + L+  + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR
Sbjct: 333 GARNRTLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGR 392

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
            G A  LV   D      IE+ +++++D
Sbjct: 393 SGIAINLVNHNDTFQWRRIERFVDRRID 420


>gi|153839366|ref|ZP_01992033.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ3810]
 gi|149747114|gb|EDM58102.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ3810]
          Length = 407

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 126/371 (33%), Positives = 199/371 (53%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L L   ++ A+ + GY +PT IQ + IP  L   D+   A TGTGKTA+FVLP L 
Sbjct: 4   TFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    R   P  + IL PTRELA QVAD      K   L +  + GG+ ++     L 
Sbjct: 64  YLQDFPRRKPGPARILILTPTRELAMQVADQARALAKKTKLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+ ++ +  +     IE LV+DEADRMLDMGF P +  +++   + +QT
Sbjct: 124 TTQDIVVATPGRLREYIDAERFDCRAIEWLVLDEADRMLDMGFAPTVDRLSNECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     ++  + + L  P  I+  +P    + I   +    +   K         
Sbjct: 184 LLFSATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADSAEHKLA---LLKH 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F   ++ +  L   LE        I G + Q  R   ++ F++GT+ ++
Sbjct: 241 IITEQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFRDGTVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A ++V   D   +D 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR 360

Query: 360 IEKLIEKKVDW 370
           + + +++ +  
Sbjct: 361 VARYVKEDIKE 371


>gi|187927918|ref|YP_001898405.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12J]
 gi|309781089|ref|ZP_07675827.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
 gi|187724808|gb|ACD25973.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
 gi|308920155|gb|EFP65814.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
          Length = 627

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 147/388 (37%), Positives = 224/388 (57%), Gaps = 23/388 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           FA LGL  ++V A+ +  Y  PTP+Q + IP  L   D+   +QTG+GKTA+F+LP    
Sbjct: 35  FAALGLDDRIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQR 94

Query: 60  -----------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNL 101
                                 + R     P  L+L PTRELA QV     +YG++   +
Sbjct: 95  ISEQPEPQRPRMDGPPQRMKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRRI 154

Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
             A ++GG+P+  Q   L R  D++I TPGR+LDH + G++ ++ +++LV DEADRMLDM
Sbjct: 155 VCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDM 214

Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
           GF   I+ I    P TRQ L+FSATM   +++++E  ++ P+RIE+         IE   
Sbjct: 215 GFSDDIEAIVGATPATRQMLMFSATMDRRIEQLAERMMREPQRIEIAAAKVDQSNIEERL 274

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
             T     K+   L   L    ++K  I+F   K++  +L   L + GFS  A+HG++ Q
Sbjct: 275 HFTDDMSHKQ--QLLDHLLRDASLKQAIVFTATKRDADSLAERLTEHGFSAGALHGDMHQ 332

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
            +R + L+  + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR
Sbjct: 333 GARNRTLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGR 392

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
            G A  LV   D      IE+ +++++D
Sbjct: 393 SGIAINLVNHNDTFQWRRIERFVDRRID 420


>gi|83310527|ref|YP_420791.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
 gi|82945368|dbj|BAE50232.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
           AMB-1]
          Length = 476

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 156/369 (42%), Positives = 229/369 (62%), Gaps = 5/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL+  ++ A+   GY  PTPIQ ++IP +LQ  DV G+AQTGTGKTASF LP+L  
Sbjct: 5   FSELGLAEPLLKALEAEGYTTPTPIQEQSIPHLLQGSDVLGLAQTGTGKTASFALPLLQR 64

Query: 63  LEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L++ + R       IL   PTRELA QV  +F+ YG +Y L  AL+ GG+    Q K + 
Sbjct: 65  LDQFKKRAMPKSCRILVLTPTRELAVQVGQSFKTYGCHYRLRHALVFGGVGMVPQIKTMA 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVL+ TPGR+LD   +G + ++++E LV+DEADRMLDMGFI  I+ I +LVP  RQT
Sbjct: 125 GGVDVLVATPGRLLDLIEQGAIRLDSVEALVLDEADRMLDMGFIQPIRKIVALVPKQRQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM D +  ++ + L  P R+EV   SST + I+   +    ++ +        + 
Sbjct: 185 VLFSATMPDSIVGLANSVLHTPVRVEVTPVSSTVDKIDQKVLFVDREHKRTL---LTDIL 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   +   ++F   K     +   LEK G    AIHGN  Q +R K L++F++G I+ +V
Sbjct: 242 AGKDVGRALVFTRTKHGANRVVELLEKAGIDADAIHGNKSQGARQKALADFRDGRIKALV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV NF++PN  E+Y+HRIGRT RAG  G A +L   +++ ++  I
Sbjct: 302 ATDIAARGIDVDGITHVINFELPNEPESYVHRIGRTARAGASGIALSLCDGDEVAYLRDI 361

Query: 361 EKLIEKKVD 369
           EK I + + 
Sbjct: 362 EKTIRQAIP 370


>gi|301053986|ref|YP_003792197.1| ATP-dependent RNA helicase [Bacillus anthracis CI]
 gi|300376155|gb|ADK05059.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 454

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 145/416 (34%), Positives = 232/416 (55%), Gaps = 14/416 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T  TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           EK +   +     +     P ++++D    N        P+KS  + +R     S+
Sbjct: 360 EKTLGAPIQREIIE----QPKIKRVD---ENGKPVPKLAPKKSGEYRQRDSREGSR 408


>gi|237751153|ref|ZP_04581633.1| DEAD-box ATP dependent DNA helicase [Helicobacter bilis ATCC 43879]
 gi|229373598|gb|EEO23989.1| DEAD-box ATP dependent DNA helicase [Helicobacter bilis ATCC 43879]
          Length = 518

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 142/371 (38%), Positives = 204/371 (54%), Gaps = 7/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL  KV+  + +AG+  P+PIQ K IP +L+R DV   AQTGTGKTA+F LP+L 
Sbjct: 21  SFRALGLKDKVLKGIKEAGFTTPSPIQEKAIPPILERRDVIAQAQTGTGKTAAFALPILH 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+           L++ PTRELA Q++D   K GK        + GG   + Q + +E+
Sbjct: 81  SLKND----SSIEALVITPTRELAMQISDEVFKLGKFLKTKTVCVYGGQSVKKQLELIEK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VLI TPGR+LDH    +L      ++V+DE+D MLDMGFI  I+ I   +P   QTL
Sbjct: 137 KPQVLIATPGRLLDHLKNERLKNFAPNVVVLDESDEMLDMGFIDDIEEIFQYIPNNAQTL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++  L +P  I++ + S+T   I       Y     +       L  
Sbjct: 197 LFSATMPARIKQLADKILYDPVHIKIQSSSTTNADI---AQRYYIINENERNEALTRLID 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            ++    IIF   KK    +   L+ +G+   A+HG++DQR R   +  FK     ++VA
Sbjct: 254 TESPSKSIIFIRTKKEADEVNSYLQNKGYKSTALHGDMDQRMRRDSVQAFKGKEADILVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI +V HVFN+ +P   E+Y+HRIGRTGRAG  G A TL    + K +  I+
Sbjct: 314 TDVAARGLDIRNVSHVFNYHIPLNIESYVHRIGRTGRAGSKGVAITLATPLEYKDLKKIQ 373

Query: 362 KLIEKKVDWLN 372
                K +   
Sbjct: 374 NETNAKFELYE 384


>gi|217968880|ref|YP_002354114.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
 gi|217506207|gb|ACK53218.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
          Length = 441

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 159/442 (35%), Positives = 237/442 (53%), Gaps = 11/442 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M+F +LGL+ +++ AV   GY  PTP+Q + IP  +   D+   + TG+GKTA+F LP +
Sbjct: 1   MNFENLGLAEELLKAVASTGYTTPTPVQQRAIPAAIAGRDLLVSSHTGSGKTAAFTLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
             I+++  A    PR L+L PTRELA QV    + YGK       A L+GG P  AQ K+
Sbjct: 61  NRIIDRRPAPGSGPRVLVLTPTRELAQQVEKAVQTYGKALRWLNTACLVGGAPMFAQIKQ 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+R  DV++ TPGR+LDH  R K+ ++++E+L++DEADRMLDMGF   I  I +  P  R
Sbjct: 121 LQRQCDVVVATPGRLLDHLTRRKIKLSDVEVLILDEADRMLDMGFAEDIDAIVAATPAKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+   +  ++    ++ +RIE+         IE   +       K    L   
Sbjct: 181 QTLLFSATLDGVVGSMATRMTRDAERIEIEVAQEDRGQIEQRLMFADDLGHKSR--LLHA 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +D M   ++F   K++   L  +L+++G S  A+HG++ Q  R + L   ++G I +
Sbjct: 239 LLGEDGMNQAVVFTATKRSADELSLALQEKGISAAALHGDMHQTQRNRTLDRLRQGRIGV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + HV NFD P +AE+Y+HRIGRTGRAGR G A TL    +   I 
Sbjct: 299 LVATDVAARGIDVAGISHVINFDPPRQAEDYVHRIGRTGRAGRDGIAITLSGPRETGLIR 358

Query: 359 AIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST-----GFDRRKK 411
           AIE+    ++    + G   S   P              +   P  S+     G  RR  
Sbjct: 359 AIERFTGDRLAVHTIPGMEPSPRKPAGPRPGGNSGRRFGSGAKPSGSSYGRPGGDARRSG 418

Query: 412 NYSSQKSHIPLKESEKISKLQQ 433
              S+  H    E     +  +
Sbjct: 419 GGFSRDGHPSRSERSHDDRRSR 440


>gi|295704908|ref|YP_003597983.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294802567|gb|ADF39633.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
          Length = 466

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 137/367 (37%), Positives = 209/367 (56%), Gaps = 6/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D  LS  +  A+ + G+ + TPIQ + IP+ +   D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFSDFHLSKDIEKAIHNLGFEEATPIQAEAIPIAMTGKDLIGQAQTGTGKTTAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +E     ++     +L PTRELA QVA+   + G+   +    + GG     Q K L++
Sbjct: 63  RVELSEEAIQGI---VLAPTRELAIQVAEELNRIGQVKGVKTLPIYGGQDINRQIKALKK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++  TPGR++DH  R  + +N+I   V+DEAD ML+MGFI  IQ I   +    QTL
Sbjct: 120 RPHIISATPGRLMDHMKRRTIRLNHIRTAVLDEADEMLNMGFIEDIQTILGGISSPHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM+ ++Q +++ F+  P+ ++V     T + IE  +V                   
Sbjct: 180 LFSATMSKQVQSLAQKFMNTPELVQVKAKQLTVKNIEQQYVEIPENRKFDVLCNL---VD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             +    I+F   KK V  L   L+K+G++   IHG++ Q  R  ++  FKE TI++MVA
Sbjct: 237 LQSPDLAIVFGRTKKRVDELAEGLKKRGYAAEGIHGDLTQSKRADVIRQFKEHTIEIMVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG  G A T +   +  H+  IE
Sbjct: 297 TDVAARGLDITGVSHVYNFDIPQDPESYVHRIGRTGRAGTKGLAVTFIIPRERHHLKVIE 356

Query: 362 KLIEKKV 368
            + + K+
Sbjct: 357 DVTKTKM 363


>gi|170727393|ref|YP_001761419.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169812740|gb|ACA87324.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 447

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 218/464 (46%), Gaps = 22/464 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F +  L  +++ ++   G   PT IQ   IP+ L   D+   ++TG+GKT +F+LP M
Sbjct: 1   MQFTEFSLDARLLQSLSHMGITTPTEIQEMAIPVGLSGKDLMASSKTGSGKTLAFLLPAM 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I+       R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRIISTKALSKRDPRVLILLPTRELANQVYSQLRLLVANTQYKALKILGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH  +    +N +E+L++DEADRMLD+GF   ++ I +     R+
Sbjct: 121 ARDPHFVVATPGRLADHLAQHHFHLNGLELLILDEADRMLDLGFADQLKAINAAADHKRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   +  +              V   +S  E  +         +      L Q +
Sbjct: 181 QTLMFSATLNHNEINEIASELLKDPKHVAVGASNIENQDITQKIYLCDHLDHKEALLQSI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   K  IIF   +++   L   L ++GF+  ++ G+++Q +R +I+  F  G   ++
Sbjct: 241 LKRGEQKQVIIFTATRQDTDRLAKKLAEEGFNTASLSGDLNQSARNQIMDQFSRGMQDIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRT RAG  G A + V  +D  +   
Sbjct: 301 VTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTARAGAKGDAISFVGPKDWVNFKQ 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +++ + K  ++    +  L         A+    +      +KS    +R K  + QK+ 
Sbjct: 361 VQQFLSKTFEF--STIEGLK--------AKFTGLKDKPKAGKKSAAKPKRTKASTKQKNA 410

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
            P     K+ K ++ I   D       G+ P  ML K + KL D
Sbjct: 411 KP---KAKVVKDKRFITGIDI------GDAP--MLRKPKSKLQD 443


>gi|270004664|gb|EFA01112.1| hypothetical protein TcasGA2_TC010324 [Tribolium castaneum]
          Length = 574

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 126/380 (33%), Positives = 198/380 (52%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  +   G+  PTPIQ +  P+ L   D+ GIA TG+GKT S++LP + 
Sbjct: 132 TFEEAGFPDYVMSEIRKMGFKHPTPIQSQGWPIALSGRDMVGIASTGSGKTLSYILPAIV 191

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       R   P  L+L PTRELA Q+      +G++  +    + GG P   Q   L
Sbjct: 192 HINHQPRLLRGDGPIALVLAPTRELAQQIQQVATDFGRSSKIRNTCVFGGAPKGPQANDL 251

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G +++I TPGR++D     +  +     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 252 MDGVEIVIATPGRLIDFLESNRTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 311

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQL 238
           TL++SAT   E+Q ++  FL++  +I V +   +A       +    +Y K+        
Sbjct: 312 TLMWSATWPKEVQALAAEFLKDYIQINVGSLQLSANHNILQIIDVCQEYEKETKLSTLLK 371

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               +     IIF   KK V  +   +++ G+    IHG+  Q+ R  +L +F+ G   +
Sbjct: 372 EIMAEKENKTIIFIETKKRVDEITRKMKRDGWPAVCIHGDKSQQERDWVLQDFRTGKAPI 431

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ DV  V NFD P+ +E+Y+HRIGRTGR+ R G A+T     +     
Sbjct: 432 LVATDVAARGLDVEDVKFVINFDYPSNSEDYVHRIGRTGRSQRTGTAYTFFTPANANKAA 491

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++++    +N  L  +
Sbjct: 492 DLVSVLKEAKQVINPKLQEM 511


>gi|170718456|ref|YP_001783672.1| ATP-dependent RNA helicase SrmB [Haemophilus somnus 2336]
 gi|168826585|gb|ACA31956.1| DEAD/DEAH box helicase domain protein [Haemophilus somnus 2336]
          Length = 444

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 140/417 (33%), Positives = 218/417 (52%), Gaps = 17/417 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F D  L+P+++ A+   GY +PT IQ+  IP +++  DV G A TGTGKTA+F+LP + 
Sbjct: 9   QFEDFDLAPQLLKALAQKGYSRPTVIQLDAIPAIMEARDVLGSAPTGTGKTAAFLLPALQ 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR L+L PTRELA QVA+  E+  +  +L++A + GG+ ++   +   
Sbjct: 69  HLLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLSIATITGGVAYQNHGEVFN 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR+L +          +EIL+ DEADRML MGF  Y + I +   + RQT
Sbjct: 129 KNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQYAEEIAAETRWRRQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL             ++ N   S  E  +      +A  ++    L     
Sbjct: 189 LLFSATLEGELLM-DFASRLLKDPVQFNAEPSRRERKKINQWYYHADSNEHKIKLLARFI 247

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +  GI+F  +++NV  L   L K+G     + G + Q  R K +   K   + ++V
Sbjct: 248 ENEQVSRGIVFVRRRENVRELSEILRKRGIRSTYLEGEMAQTQRTKAIDKLKNDVVTVLV 307

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HR+GRT RAG+ G A + V   D K +  I
Sbjct: 308 ATDVAARGIDIDDVSHVMNFDLPYNADTYLHRVGRTARAGKKGTAVSFVEAHDYKLLGKI 367

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           ++   +               L K  I +    R N P   +     +++KN +  K
Sbjct: 368 KRYTGE---------------LLKPRIIEGLEPRTNPPKDGEIKTVSKKQKNRAKTK 409


>gi|317046747|ref|YP_004114395.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp.
           At-9b]
 gi|316948364|gb|ADU67839.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
          Length = 640

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 136/378 (35%), Positives = 229/378 (60%), Gaps = 8/378 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+  ++ A+ D GYVKP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLNESILSALNDMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     ++ P+ L+L PTRELA QVA+   ++ K+      L +  G  ++ Q + L 
Sbjct: 67  NIDPN---LKAPQILVLAPTRELAVQVAEAATEFSKHMRGVNVLALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + ++++++ F+++P+ + + +  +T   I   +   Y + +       +   
Sbjct: 184 ALFSATMPEAIRRITKRFMKDPQEVRIQSSVTTRPDISQSYWTAYGRKTDALVRFLE--- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 -AEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 359

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 360 ERTMKLTIPEVELPNAEL 377


>gi|195028030|ref|XP_001986885.1| GH21617 [Drosophila grimshawi]
 gi|193902885|gb|EDW01752.1| GH21617 [Drosophila grimshawi]
          Length = 524

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 117/441 (26%), Positives = 197/441 (44%), Gaps = 12/441 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +   +   G    TPIQ   IP +L   D  G A+TG+GKT +F LP+L  
Sbjct: 9   FLQLGLRPWLAKQLTKLGLKGATPIQENCIPAILSGKDCIGAAKTGSGKTFAFALPILER 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PT ELA Q+++ F   G+   + V ++ GG     +++KL + 
Sbjct: 69  LSE---EPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMIESQKLMQR 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++  PGR+ DH         +    ++ +    +  G       I        +  L
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKSRQNL 185

Query: 183 FSATMTDELQKVSENFL---QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           F +    +  K S  F       +  + +  ++     +   +              +  
Sbjct: 186 FFSATMKDFMKESSIFPIAKDCLEWSQDSDVATVDTLDQRYLLCADYDRDMVLVESLRKY 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++   N +IF N KK    L  +L         +HG + Q+ R+  LS FK   I+ +
Sbjct: 246 REENENSNVMIFTNTKKYCQLLSMTLANMEIENVCLHGFMRQKERVAALSRFKSNHIRTL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           +A+D+AARGLDIP V  V N  +P   + YIHR+GRT RAGR G A ++     D++ + 
Sbjct: 306 IATDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGLAISIFRFPRDLELLG 365

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           AIE  I  K+     D       +E+I   Q N +R+ + +   +  FD R +NY  +  
Sbjct: 366 AIEAEINTKLTEHPID----QRMVERI-FMQVNVSRRESEMQLDNNDFDERAQNYRRKTW 420

Query: 419 HIPLKESEKISKLQQDIQEND 439
            +  K+ +++  L +  Q++ 
Sbjct: 421 IMEGKDPDQMEALYRKKQKDK 441


>gi|167389793|ref|XP_001739087.1| ATP-dependent RNA helicase FAL1 [Entamoeba dispar SAW760]
 gi|165897365|gb|EDR24551.1| ATP-dependent RNA helicase FAL1, putative [Entamoeba dispar SAW760]
          Length = 384

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL  +++  +   GY KP+ IQ + I  + +  DV   +Q+GTGKTA+F + +L 
Sbjct: 13  TFESMGLKEELLKGIYQQGYNKPSGIQQRGIVPITKGKDVIAQSQSGTGKTATFSIGILQ 72

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +E  +  V++    I+ PTRELA Q         +   + V   IGG   +   K +E+
Sbjct: 73  NVESNKREVQVI---IISPTRELAIQSERVISGLSQYMAIQVRGCIGGKSEKEDIKAIEK 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGRI+    +  + + +I+ LVIDEAD M + GF+  I +I   +P  RQ +
Sbjct: 130 GCQVISGTPGRIMGLIKKRVINVRHIKTLVIDEADEMFNKGFMEIIYDIIKYLPIKRQIV 189

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+T ++ ++    +  P  I +     T E I+  F+    +  K   L +  +  
Sbjct: 190 LCSATLTGDVIEIGTKIMNKPIEILIKRNEITVEEIKQYFIEIEKEEQKFDTLCE--IYD 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN KK V  L  ++ K  F V ++H  + Q+ R  I++ F++G  ++++ 
Sbjct: 248 SMTITQSVIFCNMKKKVDWLTENMMKANFPVISMHSEMPQQERDYIMNIFRKGEKRVLIT 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  +  V N+D+P   E YIHRIGR+GR GR G A   V K ++ ++  +E
Sbjct: 308 TDVWARGIDVTQISLVINYDMPLNREVYIHRIGRSGRFGRTGIAINFVLKNEMDNLRDLE 367

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ L  + + L
Sbjct: 368 RYYSTQINELPENFAEL 384


>gi|110004511|emb|CAK98848.1| putative atp-dependent rna helicase protein [Spiroplasma citri]
          Length = 443

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 135/421 (32%), Positives = 219/421 (52%), Gaps = 16/421 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  L L P +   +   GY   T IQ K IP+ L   D+ G + TGTGKT +F++P+L
Sbjct: 1   MNFNTLNLYPALQRMIAKMGYTNLTEIQEKAIPVALNSQDIIGKSHTGTGKTVAFIVPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L      ++ P+ +IL PT ELA+Q+ +   K+        A LI G     +     
Sbjct: 61  QNLNTH---LKQPQAIILCPTHELASQIIEQVRKFATYLEGVNATLICGGSHIQRQIYAL 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R +++++ TPGRI DH NR  L ++ I+ +V+DEAD ML MGF   +  +    P   QT
Sbjct: 118 RKSNIIVGTPGRIADHINRKTLRLDKIKTIVLDEADEMLKMGFKTDLDKVFQNAPNKYQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  ++ +++ N+  NP  I V         I   +V   + + +   +      
Sbjct: 178 LLFSATMPKQVLEIANNYQTNPVEIVVTKNVIEQNNISQHYVNAISYHKEDVLIAL---Y 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  IIF N K     +   L   G   C I+G+  +  R + +  F++G +++MV
Sbjct: 235 KHLQPKRSIIFSNTKVFTNKIAEMLTNNGIPCCIINGDKSRYERGQAMRLFRDGKVRVMV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDA 359
           A+D+AARG+DI ++ +V N+D+P   E+YIHRIGRT RAG  G A ++V+ + D++ I  
Sbjct: 295 ATDVAARGIDIDNIDYVINYDIPTERESYIHRIGRTARAGATGVAISIVSNRNDLREIQH 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +    +KK++ L+         +   D+ Q    RKN     K + F+++  ++  + S+
Sbjct: 355 LGAYQKKKIELLD---------ITTYDLKQKPQERKNFSTNHKKSAFNKKNNSFKYEDSY 405

Query: 420 I 420
           +
Sbjct: 406 L 406


>gi|91223278|ref|ZP_01258544.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
 gi|91192091|gb|EAS78354.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
          Length = 443

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 129/440 (29%), Positives = 203/440 (46%), Gaps = 11/440 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + K T IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKDLGLDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR +IL PTRELA QV           +   AL++GG  F  Q K L
Sbjct: 61  HKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYEAALILGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH     L ++ +E L++DEADRMLD+GF P ++ I       R+
Sbjct: 121 RRYPKFIVATPGRLADHLEHRSLYLDGLETLILDEADRMLDLGFAPELRRIHKAAKHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D                 +    S  E  +         +      +   +
Sbjct: 181 QTLMFSATLDHADVNEIAAEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILDRV 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+   +  IIF   + +   L   L ++     A+ GN++Q  R  I+S F+    +++
Sbjct: 241 LSEAEYRQVIIFTATRDDTERLTEKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDI  V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D      
Sbjct: 301 VTTDVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKR 360

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +E  +++ +++     L G    L PP       +    +      + +    +R K++ 
Sbjct: 361 VEAYLQQDLEFSVFEDLKGKFKGLKPPKPDFRNKKATAKKARPQAKKSAKKPAKRDKSFY 420

Query: 415 SQKS-----HIPLKESEKIS 429
              S      IP K+    S
Sbjct: 421 KNVSVGDDVFIPKKKPAAPS 440


>gi|86148269|ref|ZP_01066565.1| ATP-dependent RNA helicase [Vibrio sp. MED222]
 gi|218710959|ref|YP_002418580.1| ATP-dependent RNA helicase RhlB [Vibrio splendidus LGP32]
 gi|254797693|sp|B7VME9|RHLB_VIBSL RecName: Full=ATP-dependent RNA helicase rhlB
 gi|85833965|gb|EAQ52127.1| ATP-dependent RNA helicase [Vibrio sp. MED222]
 gi|218323978|emb|CAV20340.1| ATP-dependent RNA helicase RhlB [Vibrio splendidus LGP32]
          Length = 436

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 139/432 (32%), Positives = 214/432 (49%), Gaps = 10/432 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L P+V+  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADLDLLPQVIEGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 E    +   PR +I+ PTRELA Q+ ++ +    +  +  AL  GG  ++ Q  
Sbjct: 70  HLLKTPEHEGRKPNQPRAIIMAPTRELAIQIYNDADSLVASTGIKAALAYGGESYDKQLG 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           K+E GAD+LI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KIEEGADILIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +  L    + T   +     F       E        +T        +   ++    L Q
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMHN-PEHVVVEPERKTGHRIQEELFYPSNEHKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R KIL  F +G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   ++   ++
Sbjct: 309 LLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGESGHSISFACEDYAINL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE+ IE  +   + D S+L       D+      R  NP  ++S     R  N    +
Sbjct: 369 PPIEEYIEHAIPMSDYDASALLE-----DLPAPMRLRTRNPQQRRSNNNGPRNGNRKPNQ 423

Query: 418 SHIPLKESEKIS 429
           +  P +      
Sbjct: 424 NRRPRQPRHNKE 435


>gi|84393643|ref|ZP_00992394.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
 gi|84375711|gb|EAP92607.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
          Length = 436

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 139/432 (32%), Positives = 215/432 (49%), Gaps = 10/432 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L P+V+  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADLDLLPQVIEGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 E    +   PR +I+ PTRELA Q+ ++ +   ++  +  AL  GG  ++ Q  
Sbjct: 70  HLLKTPEHEGRKPNQPRAIIMAPTRELAIQIYNDADSLVESTGIKAALAYGGESYDKQLG 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           K+E GAD+LI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KIEEGADILIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +  L    + T   +     F       E        +T        +   ++    L Q
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMHN-PEHVVVEPERKTGHRIQEELFYPSNEHKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R KIL  F +G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   ++   ++
Sbjct: 309 LLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGESGHSISFACEDYAINL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE+ IE  +   + D S+L       D+      R  NP  ++S     R  N    +
Sbjct: 369 PPIEEYIEHAIPMSDYDASALLE-----DLPAPMRLRTRNPQQRRSNNNGPRNGNRKPNQ 423

Query: 418 SHIPLKESEKIS 429
           +  P +      
Sbjct: 424 NRRPRQPRHNKE 435


>gi|224370609|ref|YP_002604773.1| DeaD [Desulfobacterium autotrophicum HRM2]
 gi|223693326|gb|ACN16609.1| DeaD [Desulfobacterium autotrophicum HRM2]
          Length = 616

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 147/371 (39%), Positives = 223/371 (60%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+++GL   V+ A+ D GY  PT IQ +TIP +L   D+ G AQTGTGKTA+F LP+L+ 
Sbjct: 21  FSEMGLIKPVLKALDDLGYETPTTIQAETIPYILAGRDLLGQAQTGTGKTAAFALPLLSR 80

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    +++ P+ L+L PTRELA QVA++F+ Y         L +  G  +  Q  +L+R
Sbjct: 81  IDI---KLKKPQVLVLAPTRELAIQVAESFKGYAARIKGFNVLPVYGGQAYAGQLNQLKR 137

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++D   RG L +  I  LVIDEAD ML MGFI  ++ I    P  RQ  
Sbjct: 138 GVHVIVGTPGRLMDLMKRGVLDLTQIMTLVIDEADEMLRMGFIDDVEWILEQTPPGRQVA 197

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K++  +L +PK + +   ++TA+TI   F      +           ++
Sbjct: 198 LFSATMPAPIKKIAIKYLTDPKDVFIRLRTATADTIRQRFWMVKGTHKLDALTRILEAET 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D +   I+F   K   V L   LE +G++  A++G+I Q++R + +  FK+G I ++VA
Sbjct: 258 FDAI---IVFVRTKTATVELAEKLEARGYAAVALNGDIAQKARERTIDRFKKGKIDILVA 314

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HV N+D+PN AE+Y+HRIGRTGRAGR G A   V+  +   +  IE
Sbjct: 315 TDVAARGLDVERVSHVINYDIPNGAESYVHRIGRTGRAGRAGDAILFVSPRERWMLKVIE 374

Query: 362 KLIEKKVDWLN 372
           K   ++++ + 
Sbjct: 375 KTTRQQIEMMK 385


>gi|328852836|gb|EGG01979.1| hypothetical protein MELLADRAFT_78893 [Melampsora larici-populina
           98AG31]
          Length = 537

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 135/380 (35%), Positives = 213/380 (56%), Gaps = 2/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++ G    ++  +  AG+ +P+PIQ +  P+ L   DV  I+ TG+GKT +F LP + 
Sbjct: 108 NFSEAGFPDYIMAEIRKAGFTEPSPIQCQAWPMALSGRDVVAISATGSGKTIAFSLPAMI 167

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  LIL PTRELA Q+     K+G +  +    + GG+P   Q + L
Sbjct: 168 HINAQPLLAPGDGPIVLILAPTRELAVQIQGECTKFGASSRIRNTCVYGGVPKGQQIRDL 227

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA+++I TPGR++D     +  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 228 SRGAEIVIATPGRLIDMLESRRTNLQRVTYLVMDEADRMLDMGFEPQIKKILEQIRPDRQ 287

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT   E+Q+++  +L++  ++ V +   TA       V   + + KK  L++ L 
Sbjct: 288 TLMFSATWPKEIQRLANEYLKDFIQVNVGSLELTANVNITQIVEVCSDFEKKGKLIKHLE 347

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +IF   K+   +L   L + G+   AIHG+  Q  R  +L  FK G   +M
Sbjct: 348 KISAESAKVLIFVGTKRVADDLTKYLRQDGWPSLAIHGDKQQTERDWVLGEFKSGRSPIM 407

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ DV +V N+D+PN  E+YIHRIGRTGRAGR G A++ ++ +  K    
Sbjct: 408 IATDVASRGLDVKDVAYVINYDMPNGIEDYIHRIGRTGRAGRTGTAYSYISADQGKLARE 467

Query: 360 IEKLIEKKVDWLNGDLSSLN 379
           + K+++     +   L  L+
Sbjct: 468 LVKILQDAKQVVPPALVELS 487


>gi|157375528|ref|YP_001474128.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157317902|gb|ABV37000.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 462

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 148/420 (35%), Positives = 240/420 (57%), Gaps = 8/420 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F+ LGLS  ++ A+ + GY+ PTPIQ + IPL L+  ++   AQTG+GKTA+FVLP+ 
Sbjct: 1   MSFSTLGLSAPILNAISELGYLTPTPIQAEAIPLALKGKNLIAAAQTGSGKTATFVLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +      R +  R LIL PTRELA QV  + E YGKN NL    + GG+ +  Q + L
Sbjct: 61  EMLARSETQRKKRARALILTPTRELAVQVCKSIEVYGKNLNLKSIAIYGGVDYAPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR+ D + +  +  + IE+LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IDGVDIVVATPGRLRDLYTQRAIHFDEIEMLVLDEADRMLDMGFIEDITKIIDTLPEERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ ++++++++ + N  ++  N   +    I+   +                 
Sbjct: 181 NLLFSATLSRQVRELAKDTVSNAIQLSFNKERAGKPNIDQWLITVDKDKKSALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++  +  +IF   K     L   LEK+G     IH    Q  R KIL++FK G I+ +
Sbjct: 238 INENNWQQALIFIETKHGAGKLVSQLEKRGIEAECIHSGRTQAIREKILADFKTGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++ ++ARG+DI  +  V N+D+P  A+ Y+HRIGRTGRAG  G+A +LV+K+D K++  
Sbjct: 298 ISTGVSARGIDIDVLPLVINYDLPFPADEYVHRIGRTGRAGAAGEAISLVSKDDFKNLCM 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+ ++  ++     +     P + + ++  N   KN P+ + +   + R  + SS+ ++
Sbjct: 358 IERRLDHLIER---KVVEGFEPRKVVPVSVLNFEPKNKPV-RDAASKEERGHSKSSKPAY 413


>gi|261188573|ref|XP_002620701.1| ATP-dependent RNA helicase DHH1 [Ajellomyces dermatitidis SLH14081]
 gi|239593185|gb|EEQ75766.1| ATP-dependent RNA helicase DHH1 [Ajellomyces dermatitidis SLH14081]
 gi|239613245|gb|EEQ90232.1| ATP-dependent RNA helicase DHH1 [Ajellomyces dermatitidis ER-3]
 gi|327357431|gb|EGE86288.1| ATP-dependent RNA helicase DHH1 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 507

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 187/377 (49%), Gaps = 7/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 46  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 105

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                  ++ +    LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 106 ERTNPKNSKTQ---ALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLN 162

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 163 EAVHIIVGTPGRILDLASKGVADLSECSTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 222

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F     R           T+            K+       L 
Sbjct: 223 MLFSATFPMIVKS----FKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 278

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 279 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQHNRNRVFHDFRNGVCRNLV 338

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 339 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRYNLYKI 398

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +   +  
Sbjct: 399 EQELGTEIQPIPQSIDK 415


>gi|254448048|ref|ZP_05061512.1| cold-shock deAd box protein a [gamma proteobacterium HTCC5015]
 gi|198262474|gb|EDY86755.1| cold-shock deAd box protein a [gamma proteobacterium HTCC5015]
          Length = 586

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 146/402 (36%), Positives = 223/402 (55%), Gaps = 8/402 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+L L   ++  +   GY +P+PIQ ++IP +++  D+ G AQTGTGKTA+F LP+L
Sbjct: 6   VSFAELALPAPLLKTLAHIGYEQPSPIQAESIPPLMEGRDLLGTAQTGTGKTAAFALPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           T ++     V  P+ L+L PTRELA QV++ F+ Y    N    L I  G     Q K L
Sbjct: 66  TRIDTA---VAQPQVLVLAPTRELAIQVSEAFKSYAAGMNQFRVLPIYGGADIGGQIKAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGR++DH  R  L ++ ++ +V+DEAD ML MGFI  +  I S  P  RQ
Sbjct: 123 KRGPQVIVGTPGRVMDHLRRKTLKLDQLQSVVLDEADEMLRMGFIEDVNWILSHTPEERQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   ++K+S  +L NP  I++   ++T + IE  +                 +
Sbjct: 183 IALFSATMPAPIKKLSAQYLNNPVEIKIKADTATVDRIEQSYWLVKGTNK---LDALTRI 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     I+F   K   V L   LE +G+   AI+G++ Q+ R + +   K+  I ++
Sbjct: 240 LEVEDFDGVIMFARTKNMTVELADKLEARGYRSAAINGDMTQKIRERTIKQLKDEKIDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV NFD+P   E Y+HRIGRTGRAGR GKA   VA  +   + A
Sbjct: 300 VATDVAARGIDVARVSHVINFDIPYDTEAYVHRIGRTGRAGRDGKAILFVAPRERHLLRA 359

Query: 360 IEKLIEKKVDWLNGDL-SSLNPPLEKIDIAQHNHARKNNPIP 400
           IEK   + ++ +      ++    E+  + +   A + +P  
Sbjct: 360 IEKATRQTIEPMTLPCRETVQKQREEKLVKRIVEAAEQSPRE 401


>gi|194334361|ref|YP_002016221.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris
           aestuarii DSM 271]
 gi|194312179|gb|ACF46574.1| DEAD/DEAH box helicase domain protein [Prosthecochloris aestuarii
           DSM 271]
          Length = 418

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 154/424 (36%), Positives = 240/424 (56%), Gaps = 11/424 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L +   +  A+ + GY  PTPIQ + IP++L+  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MGFSSLNIIDPIARALREEGYATPTPIQAEAIPVILEGSDLLGCAQTGTGKTAAFAIPLL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                     + R  R L++ PTRELA Q+ ++F+ YG++  LT  ++ GG+    Q   
Sbjct: 61  QLLSERNTYEKKRKIRALVVTPTRELAIQIGESFKAYGRHTGLTNRVIFGGVNQNPQAAS 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+++ TPGR+LD   +G L + ++EILV+DEADRMLDMGFI  I+ I + +P  +
Sbjct: 121 LRNGVDIVVATPGRLLDLMGQGHLHLRDVEILVLDEADRMLDMGFIHDIRKILAALPEKK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM  E+ +++   L NP ++ V   SST ETI+            +  +    
Sbjct: 181 QSLFFSATMPSEIVRLAGTILHNPAKVSVTPVSSTVETIQQQVYFVDKGNKNRLLVHLL- 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                ++K  ++F   K     +   L K   +  AIHGN  Q +R + L+NFK+ + ++
Sbjct: 240 --KDQSIKTALVFTRTKHGADKVVKFLLKHDITAEAIHGNKGQNARQRALNNFKKQSTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + +V NFD+ N AE Y+HRIGRTGRAG  G A +    E+  ++ 
Sbjct: 298 LVATDIAARGIDVDALAYVINFDMSNMAETYVHRIGRTGRAGAEGTAISFCDAEEKAYLC 357

Query: 359 AIEKLIEKK---VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +EKLI KK   +D     L+ LNP      +A         P  + S   + ++ + + 
Sbjct: 358 DVEKLIAKKIPVIDRHPFPLTDLNPVK---TVAPQGRGGSGRPGAKPSHKANSKRWSVNP 414

Query: 416 QKSH 419
           +K+ 
Sbjct: 415 RKAR 418


>gi|330447422|ref|ZP_08311071.1| srmB, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491613|dbj|GAA05568.1| srmB, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 411

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 128/371 (34%), Positives = 203/371 (54%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF++L L  +++ A+ + GY +PT +Q + IP  L   DV   A TGTGKTA+F+LPM+ 
Sbjct: 3   DFSELELDSELLQAIEEIGYSRPTVVQAQAIPHALDGKDVMASAPTGTGKTAAFLLPMIQ 62

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L     +   P  + +L PTRELA QVAD      K+  L V  + GGI ++   + L 
Sbjct: 63  HLLDFPRKKPGPARVLVLTPTRELAIQVADQARTLAKHTMLKVFTITGGISYDEHAELLG 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR++++    K     IE L++DEADRMLDMGF   ++ +     +  Q+
Sbjct: 123 KTQDIVVATPGRLMEYIEAEKFDCRAIECLILDEADRMLDMGFGKVVERLNHECRWRSQS 182

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     +++ SE  L  P  +E        + I   +        K         
Sbjct: 183 LLFSATLEGKGVREFSEKILNEPVEVEAEPSRRERKKIHQLYHRCDNMEHKLA---LLEN 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  +  IIF   ++ +  L   LE  G     I G + Q +R  +++ F++G I ++
Sbjct: 240 ILKEQAERTIIFVKTRERLAVLRGQLETMGIPCNWIQGEMAQSARNNMITRFRDGVINVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV NFD+P  A+ Y+HRIGRT RAG+ G A +L+   D   I+ 
Sbjct: 300 IATDVAARGIDLPDVSHVINFDMPRTADVYLHRIGRTARAGKKGTAISLIEAHDQAMIER 359

Query: 360 IEKLIEKKVDW 370
           + + ++++V  
Sbjct: 360 VSRYMKEEVPE 370


>gi|320590896|gb|EFX03337.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 530

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 115/377 (30%), Positives = 188/377 (49%), Gaps = 7/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F + GL   ++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFEEFGLKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVIPAL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +V   + LIL PTRELA Q +   +  GK+ N+ V +  GG        +L+
Sbjct: 107 EKI---NPKVSKIQCLILVPTRELAMQTSQVCKSLGKHLNINVMVTTGGTGLRDDIVRLQ 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++    ++   + ++DEAD++L   F P I+ +    P  RQ 
Sbjct: 164 EAVHIVVGTPGRILDLASKNVADLSECPMFIMDEADKLLSAEFTPVIEQLLQFHPKDRQV 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F                 T+            ++       L 
Sbjct: 224 MLFSATFPLSVKD----FSDKNMVSPYEINLMDELTLRGITQYYAFVEERQKVHCLNTLF 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q++R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMAQQARNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRLNLYNI 399

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +   +  
Sbjct: 400 ERDLGTEIQPIPATIDK 416


>gi|150400366|ref|YP_001324133.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           vannielii SB]
 gi|150013069|gb|ABR55521.1| DEAD/DEAH box helicase domain protein [Methanococcus vannielii SB]
          Length = 538

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 138/387 (35%), Positives = 221/387 (57%), Gaps = 9/387 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F +LGLS  ++ A+   G+ +PTPIQ K IP++++   D+ G AQTGTGKTA+F LP++
Sbjct: 3   SFRNLGLSEDIINALEKKGFTEPTPIQEKAIPILIKGEMDIVGQAQTGTGKTAAFGLPII 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++      +    LIL PTRELA QVA+  +    +  L +  + GG   + Q K+L+
Sbjct: 63  ETIDTNSRNTQA---LILTPTRELAIQVAEEIDSLKGSRRLNIFPVYGGQSIDRQIKELK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGRILDH +R  + + N+  +V+DEAD ML+MGFI  ++ I   V   ++ 
Sbjct: 120 RGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVNTEKRM 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ D + K++EN++++ + I+V     T    +  F        +    L   + 
Sbjct: 180 LLFSATLPDSIMKLAENYMRDYETIKVKKQQLTTNLTDQSFYEISP---RDKFELLSRIM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +    G+IFC  K +V +L   L ++G+    +HG++ Q  R K L  FK     ++V
Sbjct: 237 DTEKEFYGLIFCKTKADVDDLSARLVERGYPAEGLHGDMTQAQREKTLDKFKRRRTTVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++ HV N+D+P   E+Y+HRIGRTGRAG+ G A T V   + +    I
Sbjct: 297 ATDVAARGIDINELTHVVNYDLPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYI 356

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKI 385
            K+ + ++  + +      +     KI
Sbjct: 357 LKIAKTEIRREEVPDIKDVIGAKRRKI 383


>gi|119477648|ref|ZP_01617798.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143]
 gi|119449151|gb|EAW30391.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143]
          Length = 441

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 161/443 (36%), Positives = 251/443 (56%), Gaps = 7/443 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F+ LGLS  ++ AV + GY KPT IQ +TIP +L   D+   +QTGTGKTASF+LP +
Sbjct: 1   MTFSTLGLSDPLLQAVEELGYTKPTAIQEQTIPTILAGRDLLAASQTGTGKTASFILPVL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +  + + R +  R L+L PTRELA QV +   +YGK  +L   +++GG+    Q + L
Sbjct: 61  QKLTGERKRRAKRLRALVLVPTRELAIQVENTIHQYGKYLSLRSMVMVGGVDAAPQKQGL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD  ++  L  + +E+L++DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IDGLDILVATPGRLLDMAHQRALYFDELEVLILDEADRMLDMGFIGDINKIIERLPTQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++DE++ +++  + +P  I +N  ++TA  I    +                 
Sbjct: 181 NLLFSATLSDEIRLLAKTAINDPIEISINATNATAPKISQWLITVDKDSKSALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++     +IF   K     L   LEK+G    AIH    Q  R ++L++FK G I L+
Sbjct: 238 IKENQWTQALIFIRTKHGAAKLVSQLEKRGIKAEAIHSGRSQAVRTQLLADFKSGNISLL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI D+  V N+D+P+  ++YIHRIGRTGRAG  G+A +LV+++D K + A
Sbjct: 298 VATGIAARGIDIDDLDRVVNYDLPDDDDDYIHRIGRTGRAGAIGEAVSLVSRDDFKRLCA 357

Query: 360 IEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS-Q 416
           IE+ + + ++   ++G +++   P+  ++       +K     QK     +  +  SS  
Sbjct: 358 IERRLNQLIERRIIDGFIAAKEVPVSVLNHVGKKPEKKVAIATQKKQASKKNDRAKSSGH 417

Query: 417 KSHIPLKESEKISKLQQDIQEND 439
           K      E EK +   Q  ++N 
Sbjct: 418 KKSSRGPEIEKANPWSQWFEKNK 440


>gi|237755972|ref|ZP_04584559.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691876|gb|EEP60897.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 405

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 148/404 (36%), Positives = 222/404 (54%), Gaps = 6/404 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL LS + + ++ + GY KPT IQ K IP V+   D+   AQTGTGKTA+F +P++ 
Sbjct: 7   TFKDLNLSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAFGVPIVE 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            +   + +V+    LIL PTRELA QVA   ++ GKN    T+A+  G       N   +
Sbjct: 67  KVNPKQKKVQ---ALILVPTRELAIQVAKEIKELGKNKKVYTLAVYGGKSISHQINFLKK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V++ TPGR+ D   RG L ++N+++ V+DEADRML+MGFI  I+ I S +P  RQ 
Sbjct: 124 GSDVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSYLPEDRQI 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+ +++E FL          P           +       K   L +  + 
Sbjct: 184 LLFSATMPKEILELAEEFLNENYETIKVKPDEVTVEKIKQIIYRVNPRDKFKKLTE--VL 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ+  +  IIF   K     L   L ++GF+  AIHG+  Q+ R  +L NF+ G ++++V
Sbjct: 242 SQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V N+ +P  AE+YIHRIGRTGRAGR G A +++   + K +  I
Sbjct: 302 ATDVAARGLDIKGVDLVINYGLPRDAESYIHRIGRTGRAGREGTAISIMTSSEDKQLQNI 361

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           +K  +  ++ +N          +K   +Q   + +N    ++ +
Sbjct: 362 QKKTKANIEVINEAQEKKFSSAQKDKPSQKERSSRNQTRRKQRS 405


>gi|90577462|ref|ZP_01233273.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90440548|gb|EAS65728.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 432

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 155/411 (37%), Positives = 233/411 (56%), Gaps = 11/411 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G S  +V A+ + GY K TP+Q K IP   +  D+  +AQTGTGKTA+F LP++
Sbjct: 1   MSFLSQGFSQDLVKALTEIGYEKLTPVQQKAIPQARRGADILALAQTGTGKTAAFSLPII 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +          R LIL PTRELA Q+A+N  +Y K  ++    + GG     Q K+
Sbjct: 61  QKLIEKPKSKSRFNVRALILAPTRELAEQIANNINEYAKYTDVNCTAIFGGKKMSTQEKR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE+G D+L+ TPGR+++H     + + N+E LV DEADRMLDMGFI  I+ I   +    
Sbjct: 121 LEQGVDILVATPGRLIEHMELNNVSLANLEFLVFDEADRMLDMGFIGAIRVILDDIRTKP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT + ++  ++ + L  P+RI V   +STA+TI H          ++   +   
Sbjct: 181 QTMLFSATSSAQMNSLASDILHKPQRITVTPENSTADTIAHVVYPVDEDRKRE---MLSE 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +   K  ++F N K+    L   L+  G      HG+  Q +R + L  FKEG  ++
Sbjct: 238 LIGKKNWKQVLVFVNYKETANQLVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+++AARGLDI ++ +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+   + 
Sbjct: 298 MVATEVAARGLDIQNLPYVVNYDMPFLAEDYVHRIGRTGRAGQKGNAISFVSREEELTLV 357

Query: 359 AIEKLIEKKV---DWLNGDLSSLNPPLEKIDIA---QHNHARKNNPIPQKS 403
            IE+LI +++     +  +  S +  LE++           RKNNP   +S
Sbjct: 358 QIERLIGQRIHRVQLIGYEPKSRDALLERMHSKPAFSQREGRKNNPTQDQS 408


>gi|50291507|ref|XP_448186.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661162|sp|Q6FNK8|RRP3_CANGA RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|49527497|emb|CAG61137.1| unnamed protein product [Candida glabrata]
          Length = 493

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 143/426 (33%), Positives = 227/426 (53%), Gaps = 8/426 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L L P+++ A  +  + KPTPIQ + IP  L   DV G+AQTG+GKTA+F +P+L 
Sbjct: 74  SFAQLNLVPELIQACQNLNFTKPTPIQARAIPPALAGSDVIGLAQTGSGKTAAFAIPILN 133

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L + +         +L PTRELA Q+ + F+  G    +    ++GG+    Q + L R
Sbjct: 134 KLWEDQQPYY---ACVLAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMR 190

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH  N     + N++ LV+DEADR+LDM F P +  I  ++P   +T
Sbjct: 191 KPHIIIATPGRLMDHLENTKGFSLKNLKFLVMDEADRLLDMEFGPVLDRILKIIPTKGRT 250

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSATMT ++ K+    L NP +  V+    T +T+    +           +     
Sbjct: 251 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLL-- 308

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   K  IIF   K N   L        FS  A+HG+++Q  R   L  FK G   ++
Sbjct: 309 -NEFIGKTVIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSIL 367

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV++ D++ I  
Sbjct: 368 VATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 427

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+++ KK+   + D + +    + +D A      + N   ++     + ++     K +
Sbjct: 428 IEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKQARGKGRRGRMMAKEN 487

Query: 420 IPLKES 425
           +  +E 
Sbjct: 488 MDREEK 493


>gi|150008034|ref|YP_001302777.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503]
 gi|149936458|gb|ABR43155.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503]
          Length = 426

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 139/428 (32%), Positives = 228/428 (53%), Gaps = 9/428 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   V+  + D  + + TP+Q  TIP++L+  D+   AQTGTGKTA++VLP++
Sbjct: 1   MRFDELDLEDAVLDGLYDMNFDETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG----GIPFEAQN 116
             L KG         +I+ PTRELA Q+    + +        A+ +     GI +E Q 
Sbjct: 61  NELSKGCHPTDAVNAVIMAPTRELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQK 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + LE GAD++I TPGR+L H   G + ++ +   V+DEADRMLDMGF   I  +   +P 
Sbjct: 121 RGLEMGADIVIATPGRLLSHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             QT++FSATM  +++ +++  L++P+ +++         ++  ++    Q  K    + 
Sbjct: 181 YCQTIMFSATMPPKIRTLAKTILKDPEEVKIAISRPPESIMQTAYICYDPQKLK----IL 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q L +Q   +  IIF + K  V  L  +L++  F+V A+H +++Q  R +++  FK G I
Sbjct: 237 QDLFTQSRPQRVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIK 355
            ++VA+D+ ARG+DI D+  V NFD+P+  E+Y+HRIGRT R     G A T V+ ++  
Sbjct: 297 DILVATDVVARGIDINDIKLVVNFDIPHDPEDYVHRIGRTARGTNGEGLAITFVSIDEQA 356

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
               IE  +EK+V  +         PL + +    N   +  P   +  G     +  ++
Sbjct: 357 QFKRIEDFLEKEVYKIPVSPEFGEVPLYEPEKYGMNKRGRGRPRKSEDKGSSSSPQKRNT 416

Query: 416 QKSHIPLK 423
                P K
Sbjct: 417 GHRGRPKK 424


>gi|194863293|ref|XP_001970368.1| GG23409 [Drosophila erecta]
 gi|190662235|gb|EDV59427.1| GG23409 [Drosophila erecta]
          Length = 526

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 117/441 (26%), Positives = 201/441 (45%), Gaps = 12/441 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +V  +   G    TPIQ K IP +L   D  G A+TG+GKT +F LP+L  
Sbjct: 9   FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILER 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PT ELA Q+++ F   G+   + V ++ GG     +++KL + 
Sbjct: 69  LSE---EPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQR 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++  PGR+ DH         +    ++ +    +  G       I       ++  L
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKKRQNL 185

Query: 183 FSATMTDELQKVSENFL---QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           F +    +  K S  F       +  + +  ++     +   +              +  
Sbjct: 186 FFSATMKDFIKESSIFPIASDCFEWSQDSDVATVDTLDQRYLLCADYDRDMVLIEALRKY 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++   N +IF N KK    L  +L+        +HG + Q+ R+  LS FK   ++ +
Sbjct: 246 REENESANVMIFTNTKKYCQLLSMTLKNMDIDNVCLHGFMRQKERVAALSRFKSNQVRTL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           +A+D+AARGLDIP V  V N  +P   + YIHR+GRT RAGR G + ++     D++ + 
Sbjct: 306 IATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLG 365

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           AIE+ I  K+     D       +E+I   Q N  R+ + +   +  FD R +NY  +  
Sbjct: 366 AIEEEINTKLTEHPID----QRMVERI-FMQVNVTRRESEMQLDNNDFDERAQNYRRKTW 420

Query: 419 HIPLKESEKISKLQQDIQEND 439
            +  K+ +++  L +  Q++ 
Sbjct: 421 IMEGKDPDQMEALYRKKQKDK 441


>gi|323499382|ref|ZP_08104358.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
 gi|323315567|gb|EGA68602.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
          Length = 477

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 172/460 (37%), Positives = 255/460 (55%), Gaps = 18/460 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY KP+PIQ + IP VLQ  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEQGYDKPSPIQEQAIPAVLQGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L+ G   +    R L+L PTRELAAQV +N  KY +   LT  ++ GG+    Q  KL
Sbjct: 61  ERLDNGTRVKGNHVRALVLTPTRELAAQVQENVFKYSRYQRLTSQVIFGGVKANPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DVL+ TPGR+LD + +  +  + +E+LV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGCDVLVATPGRLLDLYQQNAIKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + +P  +   + S    T      + Y    +K A +   +
Sbjct: 181 NLLFSATFSPEIRELAKGLVNDPVEV---SVSKENSTAVTIEQSIYPADKRKKAPMLVKM 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  ++FC  K     L   L K+G +   IHGN  Q +R + L++FK G ++++
Sbjct: 238 IKDGDWKQTLVFCRTKHGANRLAFFLNKEGITAAPIHGNKSQGARTRALADFKSGDVKVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++PN +E+Y+HRIGRTGRAG  GKA++LV   +   +  
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPNVSEDYVHRIGRTGRAGEVGKAYSLVEAAEASELFG 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDIAQHNHARKNNPIP--------QKSTGFD 407
           IE+LI++ +  L  +L    P    P  K+D       +   P          Q+S    
Sbjct: 358 IERLIQQVLPRL--ELEGFKPVNELPESKLDTRPIKAKKPKKPKKPKVDHQDGQRSGDNA 415

Query: 408 RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
           R  K     K H    ++   +  + + +   A+  G  G
Sbjct: 416 RGNKPAGKNKRHFGHNKTSGDNNKKTENKGQRANKAGNNG 455


>gi|283788210|ref|YP_003368075.1| ATP-dependent RNA helicase (DEAD-box protein) [Citrobacter
           rodentium ICC168]
 gi|282951664|emb|CBG91364.1| ATP-dependent RNA helicase (DEAD-box protein) [Citrobacter
           rodentium ICC168]
          Length = 626

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 133/378 (35%), Positives = 221/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   V+ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPVLEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +   +     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|224135925|ref|XP_002322195.1| predicted protein [Populus trichocarpa]
 gi|222869191|gb|EEF06322.1| predicted protein [Populus trichocarpa]
          Length = 450

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 131/378 (34%), Positives = 205/378 (54%), Gaps = 3/378 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +       +  +   G+V+PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP    
Sbjct: 70  FHEANFPDYCLQVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAFVH 129

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +      V    P  L+L PTRELA Q+ +   K+G   N+    + GG P   Q + L+
Sbjct: 130 VAAQPRLVHGDGPIVLVLAPTRELAVQIQEEALKFGSKANIRSTCIYGGAPKGPQIRDLQ 189

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D      + +  +  LV+DEADRMLDMGF P I+ I S +   RQT
Sbjct: 190 RGVEIVIATPGRLIDMLGAQHVNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQT 249

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L +SAT   E++ ++ +FL NP ++ + +    A       V       K   L  +LL+
Sbjct: 250 LYWSATWPREVEALARHFLHNPYKVIIGSQDLKANQSIKQVVEVMMDLEKYKRL-IKLLK 308

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF   KK    +   L   G++  +IHG+ +Q  R  +L+ FK G   +M 
Sbjct: 309 EVMDGSRILIFMETKKGCDQVTRQLRMDGWAALSIHGDKNQAERDWVLAEFKSGRSPIMT 368

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+  V N+D P+  E+Y+HRIGRTGRAG  G A T   + + K    +
Sbjct: 369 ATDVAARGLDVKDIKCVVNYDFPSSLEDYVHRIGRTGRAGARGTALTFFTESNAKFARDL 428

Query: 361 EKLIEKKVDWLNGDLSSL 378
            K++++    +   LS++
Sbjct: 429 IKILQEAGQIVPPSLSAM 446


>gi|208779218|ref|ZP_03246564.1| dead/deah box helicase domain protein [Francisella novicida FTG]
 gi|208745018|gb|EDZ91316.1| dead/deah box helicase domain protein [Francisella novicida FTG]
          Length = 441

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 152/403 (37%), Positives = 236/403 (58%), Gaps = 8/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+  +  A+   GY KPTPIQ + IP+VL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MKFSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  +  +++   V+DEADRMLDMGFI  ++ I  L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++  FL NP+ +  +  ++T + I                +     
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   ++F   K     +   L   G S  AIHGN  Q +R K L++FK   I ++
Sbjct: 238 IKDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+PN AE+Y+HRIGRTGRAG+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           IE LI   +    L G  ++ N P+  +  +    A+K + + 
Sbjct: 358 IEHLIGHLLPRAELEGFEATHNVPITSM--SHKTKAKKIDEVK 398


>gi|28900445|ref|NP_800100.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260362335|ref|ZP_05775298.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260877397|ref|ZP_05889752.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260898434|ref|ZP_05906930.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|28808756|dbj|BAC61933.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085113|gb|EFO34808.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308090744|gb|EFO40439.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308111119|gb|EFO48659.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|328470398|gb|EGF41309.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus 10329]
          Length = 430

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 154/408 (37%), Positives = 236/408 (57%), Gaps = 15/408 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  G +P+VV A+ + GY K TPIQ K IP+  + HD+   AQTGTGKTA+F LPM+
Sbjct: 1   MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMI 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L               IL PTRELA Q+ADN + Y K  +L+V  + GG    +Q   
Sbjct: 61  QQLLDSGRTASRKTARALILAPTRELAEQIADNIKAYTKYTDLSVVAVFGGRKMSSQVSA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H  +G + + N+E LV DEADR+LDMGFI  ++ I   V    
Sbjct: 121 LENGVDILVATPGRLEEHIEQGNVSVANLEFLVFDEADRILDMGFIHAVRKIMLDVDTDP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L  ++++ L+ PKRIEV   ++TA T+ H       +   +       
Sbjct: 181 QIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAHTVAHVLYPVDQERKTELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F N K+   ++   L+  G      HG+  Q +R + L  FK G +++
Sbjct: 239 -IGRKNWQQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V +++   + 
Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNRDEELTVV 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPP-----LEKIDIA---QHNHARKNNP 398
            +E LI++++  +  +L+   P      +EK++     ++   R+NNP
Sbjct: 358 QVENLIQQRIRRI--ELAGYEPKQRESYIEKLNSKPAFKNRQGRRNNP 403


>gi|296104876|ref|YP_003615022.1| ATP-dependent RNA helicase DeaD [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059335|gb|ADF64073.1| ATP-dependent RNA helicase DeaD [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 631

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 133/378 (35%), Positives = 222/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     +R P+ L+L PTRELA QVA+   ++ K+      + +  G  ++ Q + L 
Sbjct: 67  NIDP---DLRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   + + Y     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +       + L
Sbjct: 361 ERTMKLTIPEAELPNAEL 378


>gi|209695626|ref|YP_002263555.1| putative ATP-dependent RNA helicase [Aliivibrio salmonicida
           LFI1238]
 gi|208009578|emb|CAQ79874.1| putative ATP-dependent RNA helicase [Aliivibrio salmonicida
           LFI1238]
          Length = 398

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 158/403 (39%), Positives = 237/403 (58%), Gaps = 10/403 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  ++ A+ + GY  PTPIQ K IP+ L   ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSNLGLSNPILKAINELGYKAPTPIQEKAIPVALTGKNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L + + +VR    R LIL PTRELA QV DN  KY K+ +LT   + GG+ ++ Q ++
Sbjct: 61  QMLSEEQTKVRAKRIRALILTPTRELAVQVEDNISKYSKHLDLTSLAMYGGVDYKEQKQR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+L+ TPGR+LD + +  +  + I+ILV+DEADRMLDMGFI  I  I   +P  R
Sbjct: 121 LIEGVDILVATPGRLLDMYTQRAVHFDEIDILVLDEADRMLDMGFIEDINKIIERLPLER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT++++++ ++   + NP  I +   S+    I+   +                
Sbjct: 181 QNLLFSATLSEQVRALARTAINNPIEITIERNSNAEPKIDQWLITVDKDKKSALISHL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++     +IF   K     L   LEK+G +  A H    Q +R K+L++FKEG ++ 
Sbjct: 239 -IKENDWDQALIFIETKHGAAKLVGQLEKRGITAEAFHSGRSQDARSKVLNDFKEGRLKY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+ +AARG+DI ++  V N+D+P  AE+Y+HRIGRTGRAG  G+A + V+++D K++ 
Sbjct: 298 LVATGIAARGIDIDELTRVINYDLPFPAEDYVHRIGRTGRAGSSGEAISFVSRDDFKNLC 357

Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
            IEK +   +    + G + + + P   I I      RK  P 
Sbjct: 358 MIEKRLGHLIVRKEIEGFVPNKDVP---ISILNFKPTRKPAPK 397


>gi|326493772|dbj|BAJ85348.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 414

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 196/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 42  SFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G       + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 102 QLDYGLVE---CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS 158

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 159 GVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVG 218

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 219 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDL--YE 276

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 277 TLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMRQFRSGSSRVLIT 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V +ED + +  I+
Sbjct: 337 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTREDERMLFDIQ 396

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     ++ L  +++ L
Sbjct: 397 KFYNVVIEELPANVADL 413


>gi|320580546|gb|EFW94768.1| ATP-dependent RNA helicase [Pichia angusta DL-1]
          Length = 529

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 125/383 (32%), Positives = 199/383 (51%), Gaps = 3/383 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+  PT IQ +  P+ L   D+ GIA TG+GKT S+ LP + 
Sbjct: 97  SFDEAGFPDYVLKEVKAQGFPNPTAIQCQGWPMALSGRDMVGIASTGSGKTLSYCLPAIV 156

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA Q+     K+G++  +    + GG+P   Q + L
Sbjct: 157 HINAQPLLQPGDGPICLVLAPTRELAVQIQKECSKFGRSSRIRNTCVYGGVPKGQQIRDL 216

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA++ I TPGR+LD  + G+  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 217 ARGAEICIATPGRLLDMLDSGRTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 276

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT    +Q ++ ++L +  ++ + +    A       +   ++Y K+  L + L 
Sbjct: 277 TLMWSATWPKSVQTLARDYLNDYIQVNIGSLDLAASHNIKQIIDVCSEYEKRDKLAKHLE 336

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQG-FSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +    +  +I     K   +   +  +   +   AIHG+ +QR R  +LS F+ G   +
Sbjct: 337 TAMQDPQAKVIVFASTKRTCDEITAYMRSEGWPALAIHGDKEQRERDWVLSEFRSGRSPI 396

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARG+D+  V  V N D+P   E+Y+HRIGRTGRAG  G A T+    +     
Sbjct: 397 MVATDVAARGIDVKGVTTVINHDMPGNVEDYVHRIGRTGRAGEKGTAITMFTDGNSGQAH 456

Query: 359 AIEKLIEKKVDWLNGDLSSLNPP 381
            +  ++ +    +   L +L+  
Sbjct: 457 DLITILREAKQEIPPQLQALDKK 479


>gi|260773326|ref|ZP_05882242.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260612465|gb|EEX37668.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 428

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 151/410 (36%), Positives = 234/410 (57%), Gaps = 11/410 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G +P++V A+ + GY K TPIQ + IP   + HD+   AQTGTGKTA+F LP++
Sbjct: 1   MSFLSQGFAPELVKALTECGYEKLTPIQQQAIPEARKGHDIFATAQTGTGKTAAFSLPVI 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +         IL PTRELAAQ+A N + Y K  +L+V  + GG    +Q ++
Sbjct: 61  QRLLDSGKKPSPHTARALILAPTRELAAQIAQNIKDYVKYTSLSVTAVYGGNKMSSQVRQ 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H + G + + N+E LV DEADR+LDMGFI  ++ I   V  + 
Sbjct: 121 LESGVDILVATPGRLEEHLSEGNVSLANLEFLVFDEADRILDMGFINPVRKIMLEVETSP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L +++ + L+ PKRI  +  ++TA T+ H       +   +       
Sbjct: 181 QIMMFSATTSAQLNQLAGDILRKPKRINADRVNTTASTVAHVVYPVDQERKTELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F N K+    +   L+  G      HG+  Q +R + L  FKEG  ++
Sbjct: 239 -IGRKNWQQVLVFVNYKETANQVVKELKLDGIKAVICHGDKGQSARRRALDEFKEGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+   + 
Sbjct: 298 MVATDVAARGLDIVDLPHVINYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVSREEELTLI 357

Query: 359 AIEKLIEKKVDWLN---GDLSSLNPPLEKIDIA---QHNHARKNNPIPQK 402
            +E LI++++  +     +    +  LEK+      +    R+NNP   K
Sbjct: 358 QVENLIQQRIRRVEQPGYEPKKRDAYLEKLHTKAAFKDRQGRRNNPNEDK 407


>gi|229496684|ref|ZP_04390398.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316581|gb|EEN82500.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           endodontalis ATCC 35406]
          Length = 451

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 139/467 (29%), Positives = 230/467 (49%), Gaps = 26/467 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F D   + +V+  +    + +PTPIQ  TIP +L+  D+ G AQTGTGKTA+++LP++
Sbjct: 1   MNFFDFDFADEVLDGLDAMNFSEPTPIQEATIPPLLEGRDLLGCAQTGTGKTAAYLLPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +  G       + +++ PTRELA Q+      +G   +++   + GG    A  +   
Sbjct: 61  NRIYLGEFEEGYIKAIVMAPTRELAQQIDQQITGFGYFVSISSLAIYGGTDGSAWAQAQR 120

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              RG D+++ TPGR++   N     +++    VIDEADRMLDMGF   I +I   +P T
Sbjct: 121 GAERGTDIVVATPGRLISMLNLQAADISHTSYFVIDEADRMLDMGFYDDIMSICRHLPKT 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q  LFSATM  ++++++ + L+          S   ETI       Y            
Sbjct: 181 CQIALFSATMPPKIEELARSILK-DPVHVAIAISKPPETILQSAYICYEAQKLPIVTDLL 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              S++     ++F + K  V  L  +L+ +G +V  +H ++DQ +R +++ +FK G ++
Sbjct: 240 SSMSEEKPTKTVVFSSSKLKVHQLATALKSRGVNVAEMHSDLDQTTREQVMRDFKTGYVE 299

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR--AGRHGKAFTLVAKEDIK 355
           ++VA+D+ ARG+DI D+  V N+D+P+  E+Y+HRIGRT R   GR G A TLV +E+ +
Sbjct: 300 VLVATDIVARGIDIDDIKVVINYDMPHDPEDYVHRIGRTARGTDGR-GVAITLVNEEEQR 358

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
              A+E  +   +  +         P          ++ K +     + G  RR K    
Sbjct: 359 SFAALEHFLGYSIYKVPIGSEYGEAP---------KYSPKTSQKRYNNGGNRRRPKGEKQ 409

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLG---FRGNMPAFMLPKNRG 459
            K     K+       +Q   EN     G    R   P F   +++G
Sbjct: 410 AKRASNGKQ-------KQTQSENGTTPKGRVSHRSRKPFFRKKRSKG 449


>gi|86159377|ref|YP_466162.1| DEAD/DEAH box helicase-like protein [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85775888|gb|ABC82725.1| DEAD/DEAH box helicase-like protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 487

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 143/408 (35%), Positives = 222/408 (54%), Gaps = 15/408 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
            FADL LS K + A+  AG+  PTPIQ + IP  L   DV G A TGTGKTA+F+LP++ 
Sbjct: 16  TFADLNLSEKTLHALERAGFEHPTPIQTQAIPPALAGRDVIGAAATGTGKTAAFLLPIIE 75

Query: 61  -------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                              PR L+L PTRELA Q+A   +++G+  ++  AL+IGG+   
Sbjct: 76  RLSGAATKDRPAAAHARPGPRALVLAPTRELAVQIAGELDRFGRGRHVRGALVIGGVGMG 135

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           AQ+  L     + + TPGR++DH  +G   ++ +E+LV+DEADRMLDMGF P ++ I + 
Sbjct: 136 AQSAALRDHEVI-VATPGRLVDHLQQGTARLDGLEVLVLDEADRMLDMGFAPQLKRILAR 194

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           VP  RQTLLFSATM  E+      F +   R  V    + + T+            ++  
Sbjct: 195 VPKVRQTLLFSATMAGEVAD----FARAHLRDPVRVEVARSGTLAERAEQRVFLPEQREK 250

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L   +   +D   + ++F   K+    +  +L++ G  V  IH +  Q  R   L  F++
Sbjct: 251 LPLLMALLEDDDLSTLVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFRD 310

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G  +++VA+D+AARG+D+ ++GHV NFD+P+  E+Y+HR+GRT R    G+A   V+ E+
Sbjct: 311 GQYRVLVATDIAARGIDVAEIGHVVNFDLPHVPEDYVHRVGRTARMAASGRASAFVSPEE 370

Query: 354 IKHIDAIEKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           +  +  IE+L    +    +  + ++    L++ D AQ N      P 
Sbjct: 371 LDLLRDIERLTRAPIPRAEVPREHATFQAELQRADAAQANPGPGARPA 418


>gi|86132787|ref|ZP_01051379.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
 gi|85816741|gb|EAQ37927.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
          Length = 454

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 149/452 (32%), Positives = 236/452 (52%), Gaps = 6/452 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   +  A+ D GY +PTPIQ+  +  V+   DV GIAQTGTGKT +++LP+L
Sbjct: 3   MTFKDLNLDKFLWNALDDMGYTQPTPIQVDALAPVMSGSDVVGIAQTGTGKTFAYLLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     R   PR LIL PTREL  QV +  EK  K  ++ +A + GG     Q   + 
Sbjct: 63  RTLPYS--RQENPRVLILVPTRELVLQVVNELEKLTKYIDVRIAGVYGGSNINTQKALIA 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TPGR+ D      L + +I+ +VIDE D MLD+GF P + NI  ++P  RQ 
Sbjct: 121 QGQDIVVATPGRLYDLAVSRVLQLKSIQKVVIDEVDVMLDLGFRPQLMNIFDILPKRRQH 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSATMT+++  + +++   PK I+V    +  E I+         Y+K   +L++L  
Sbjct: 181 IMFSATMTEDVDALIKDYFNKPKFIKVARSGTPLENIKQVGYKIPNFYTKVNFILEELAS 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   K  +   +++          E     V  IH N  Q  R+  ++ F EG +++MV
Sbjct: 241 AKAYPKTLLFVRDKRMADRLYLKLEEAFPGQVDLIHSNKTQNYRINSINAFSEGKVRMMV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLDI D+ HV N + P   ENY+HRIGRTGRA + G +  L    +   ++ I
Sbjct: 301 ATDVMARGLDIDDITHVINVNTPRFPENYLHRIGRTGRAQKEGTSIVLSTPAEDAFLEEI 360

Query: 361 EKLIEKK--VDWLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           E L+  K  ++ L  D  +S    P E+ +  +  +  K N   + + G    +K+  + 
Sbjct: 361 EALMGVKVPIETLPEDVQISKELTPEERPEAKEIFNPHKWNKNDEDAPGPAFHEKSEKNS 420

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
           K ++      +I+K  +  +     +   R  
Sbjct: 421 KVNLGGSYRREIAKKYKKPKTRGDKNYNKRNK 452


>gi|285019480|ref|YP_003377191.1| ATP-dependent RNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283474698|emb|CBA17197.1| probable atp-dependent rna helicase protein [Xanthomonas
           albilineans]
          Length = 456

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 165/424 (38%), Positives = 240/424 (56%), Gaps = 17/424 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PTPIQ + IP+ LQ HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTPIQSQAIPVALQGHDLMAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L      V    R PR LIL PTRELA QV D+   Y K   +  A + GG+    Q 
Sbjct: 61  QHLGTSAQTVGSGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSATIYGGVGMGNQL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L RG D+LI  PGR+LDH  R  + ++ IEILV+DEADRMLDMGF+P I+ I + +P 
Sbjct: 121 DALRRGVDLLIACPGRLLDHLERRSVDLSGIEILVLDEADRMLDMGFLPSIKRILTKLPK 180

Query: 177 TRQTL-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +   LFSAT  + +++++  F+ NP+ I+    ++ A+TI H          ++  L 
Sbjct: 181 QNRQTLLFSATFEEGIKQLAREFMHNPQEIQATPSNTVADTITHRVHPVDGARKRELLLH 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                S+   K  ++F   K     L   L+K G    AIHGN  Q  R++ L +FK   
Sbjct: 241 LLAADSR---KQTLVFARTKHGADKLTTFLDKSGIKAAAIHGNKSQGQRLRALGDFKASR 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LVA+++ K
Sbjct: 298 ITVLVATDIAARGIDIDQLPQVINYDLPMVAEDYVHRIGRTGRNGAQGEAVSLVAQDEAK 357

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            + AI +L+++ +D    D+    P       A       NNP  ++  G    ++   +
Sbjct: 358 LLRAIARLLKRDMDI--RDVPGFEP-------ATPIRWGNNNPPDERPGGNRPPRRGSHA 408

Query: 416 QKSH 419
           ++ H
Sbjct: 409 RRGH 412


>gi|229099881|ref|ZP_04230804.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-29]
 gi|228683496|gb|EEL37451.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-29]
          Length = 481

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 129/369 (34%), Positives = 222/369 (60%), Gaps = 6/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++  LS +++ A+   GY  PT +Q + IP+ L++ D+   +QTG+GKTASF +P+  
Sbjct: 5   EFSNYALSKEIIRALTGLGYEHPTEVQGEVIPVALKKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++K+S  ++ +P  IE+     T + IEH     +    ++   L + + +
Sbjct: 182 LFSATLPEDVEKLSRTYMDSPTHIEIKAAGITTDKIEH---TLFETREEEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L +  +    IHG + Q  R +++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVFRQLNRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNKGKAITFITPYENRFLEEIE 358

Query: 362 KLIEKKVDW 370
             I  ++  
Sbjct: 359 AYIGFEIPK 367


>gi|58268226|ref|XP_571269.1| p68-like protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|74684726|sp|Q5KFM6|DBP2_CRYNE RecName: Full=ATP-dependent RNA helicase DBP2-A
 gi|57227504|gb|AAW43962.1| p68-like protein, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 540

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 207/379 (54%), Gaps = 2/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    ++  +   G+  P+ IQ +  P+ L   D+  IA+TG+GKT SF LP + 
Sbjct: 111 TFEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLPAMV 170

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  LIL PTRELA Q+     K+G++  +    + GG P   Q + L
Sbjct: 171 HINAQPLLAPGDGPIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQIRDL 230

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG ++ + TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 231 QRGVEICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQ 290

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   E+Q+++ +FL +  ++ + +   TA       V     + K+  LL  L 
Sbjct: 291 TLLFSATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSHLE 350

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +IF   K+   +L   L   G+   AIHG+  Q  R  +L+ FK G   +M
Sbjct: 351 KISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIM 410

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ D+G+V N+D PN  E+YIHRIGRTGRAGR G ++T    ++ K    
Sbjct: 411 LATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKAARE 470

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + +++ +    +  +L  +
Sbjct: 471 LVQILRESKADIPPELEEM 489


>gi|58268224|ref|XP_571268.1| p68-like protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|57227503|gb|AAW43961.1| p68-like protein, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 527

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 207/379 (54%), Gaps = 2/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    ++  +   G+  P+ IQ +  P+ L   D+  IA+TG+GKT SF LP + 
Sbjct: 98  TFEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLPAMV 157

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  LIL PTRELA Q+     K+G++  +    + GG P   Q + L
Sbjct: 158 HINAQPLLAPGDGPIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQIRDL 217

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG ++ + TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 218 QRGVEICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQ 277

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   E+Q+++ +FL +  ++ + +   TA       V     + K+  LL  L 
Sbjct: 278 TLLFSATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSHLE 337

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +IF   K+   +L   L   G+   AIHG+  Q  R  +L+ FK G   +M
Sbjct: 338 KISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIM 397

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ D+G+V N+D PN  E+YIHRIGRTGRAGR G ++T    ++ K    
Sbjct: 398 LATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKAARE 457

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + +++ +    +  +L  +
Sbjct: 458 LVQILRESKADIPPELEEM 476


>gi|62390044|ref|YP_225446.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
           13032]
 gi|41325380|emb|CAF19860.1| Superfamily II DNA and RNA helicase [Corynebacterium glutamicum
           ATCC 13032]
          Length = 732

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 143/371 (38%), Positives = 215/371 (57%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  +V+ AV   GY  P+PIQ +TIP++++  DV G+AQTGTGKTA+F LP+L  
Sbjct: 104 FDALGLPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTGTGKTAAFALPILAR 163

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++K    VR P+ L+L PTRE A QVAD+F+ +  +      L I  G  +  Q   L R
Sbjct: 164 IDKS---VRSPQALVLAPTREQALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRR 220

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  +G L ++ +  LV+DEAD ML+MGF   ++ I    P  +Q  
Sbjct: 221 GAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVA 280

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++S+ +L NP  I V + + T   I   F+       +        +  
Sbjct: 281 LFSATMPNGIRRLSKQYLNNPAEITVKSETRTNTNITQRFLNVAH---RNKMDALTRILE 337

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K     +   L  +GFS  AI+G+I Q  R + +   K+G + ++VA
Sbjct: 338 VTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 397

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV NFD+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 398 TDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 457

Query: 362 KLIEKKVDWLN 372
           +     +  + 
Sbjct: 458 RATNAPLHEME 468


>gi|83945168|ref|ZP_00957517.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
 gi|83851338|gb|EAP89194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
          Length = 466

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 152/392 (38%), Positives = 223/392 (56%), Gaps = 10/392 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL+P ++ A+ + GY  PTPIQ + IP V++ HD+ G+AQTGTGKTA+FVLP++ 
Sbjct: 20  KFTDFGLNPSILTAISEQGYETPTPIQARAIPAVMKGHDLIGLAQTGTGKTAAFVLPLVH 79

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L     +         IL PTRELAAQ+ +  + Y  +  LT  ++ GG+    Q K L
Sbjct: 80  QLLAENKQAPGRSCRALILAPTRELAAQIEEQVKAYTAHTKLTSTVVFGGVKAGPQIKAL 139

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LDH    K  ++    +++DEAD+MLD+GFIP I+ +  +V   RQ
Sbjct: 140 ARGVDILVATPGRLLDHLGERKARLDLTRFVILDEADQMLDLGFIPAIRKLLRMVGEERQ 199

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSATM   +++++++FL +P+ + V  PS   E I+     T A       +     
Sbjct: 200 TLMFSATMAPAIRQLADDFLDHPETVAVTPPSKPVERIDQKVFYTEASAKPDALIDL--- 256

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +  K  IIF   K     +   L K G    AIHG+  Q  R + L  FK G   ++
Sbjct: 257 MAPEAGKRAIIFTRTKYGADRVAKRLVKYGHKANAIHGDKSQNQRTRALDAFKSGEAPVL 316

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V  V N+++PN AENY+HRIGRT RAG  G+A  L A ++   +  
Sbjct: 317 VATDIAARGIDVDGVDLVVNYELPNVAENYVHRIGRTARAGASGRAVALCAPDERVMLKD 376

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
           IEK +   +  LN       PP+ K + A+  
Sbjct: 377 IEKTMGVTIQGLND-----APPMPKGEAAKSK 403


>gi|328676775|gb|AEB27645.1| Cold-shock DEAD-box protein A [Francisella cf. novicida Fx1]
          Length = 569

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 150/433 (34%), Positives = 241/433 (55%), Gaps = 14/433 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGL+  +V  V+  GY  PTPIQ   IP +L   DV G AQTGTGKTA+F LP++ 
Sbjct: 8   DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++    R R P+ L+L PTRELA QVA+ FE + KN        I  G  + +Q + L+
Sbjct: 68  NIDLKS-RDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ T GR++DH  +G L ++N+  LV+DEAD ML MGFI  ++ + S V    Q 
Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSDECQR 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++  + E +L+NP +I+V   + TA T+   F+                 +
Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETE 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +   IIF   K + + +  +L+  G+ V AI+G++ Q  R  I+  F+     ++V
Sbjct: 247 ETDGV---IIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+  + HV N+D+PN  + Y+HRIGRTGRAGR G + +LV  ++++ +  +
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ--HNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           E+     +  +        P  + +  ++  H  AR  + +  K+   D+ K+  +S + 
Sbjct: 364 ERFTGSPMQEV------FMPSAKDLAQSRVEHFKARIISAL-DKNKSLDKYKEIITSIRD 416

Query: 419 HIPLKESEKISKL 431
            + L   E ++ L
Sbjct: 417 ELQLDSEELLAGL 429


>gi|227113019|ref|ZP_03826675.1| ATP-dependent RNA helicase RhlE [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 471

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 156/435 (35%), Positives = 244/435 (56%), Gaps = 13/435 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGLS  ++ A+ + GY  PTP+Q + IP+VL+  D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFDSLGLSADILRAIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 60  ----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                   +      R  R LIL PTRELAAQ+ +N + Y K  +L   ++ GG+    Q
Sbjct: 61  QLLTSREAQHKGKGRRPVRALILTPTRELAAQIDENVKAYSKYLSLRSLVVFGGVSINPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL  G D+L+ TPGR+LD  ++  + ++ +EILV+DEADRMLDMGFI  I+ + + +P
Sbjct: 121 MMKLRGGVDILVATPGRLLDLEHQRAVDLSQVEILVLDEADRMLDMGFIHDIRRVLAKLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT +DE++ ++   L NP  +EV   ++ +E +         +  ++    
Sbjct: 181 AKRQNLLFSATFSDEIKALANKLLTNPASVEVVRRNTPSELVTQHVHFVDKRRKRELLSQ 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 ++  +  ++F   K    +L   LEK G +  AIHGN  Q +R + L+NFK+G+
Sbjct: 241 L---IGENNWQQVLVFTRTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANFKDGS 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++ K
Sbjct: 298 IRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCVDEHK 357

Query: 356 HIDAIEKLIEKKVDWL-----NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            +  IE+L+++++  +       D S    P+              N  P+  +G  R +
Sbjct: 358 LLRDIERLLKREIPRIAIEGYEPDPSIKAEPIVNGRQGNRGGGGARNASPRAQSGAPRGQ 417

Query: 411 KNYSSQKSHIPLKES 425
                   +   +++
Sbjct: 418 GERRPADGNRQPRKA 432


>gi|95928808|ref|ZP_01311554.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
 gi|95135153|gb|EAT16806.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
          Length = 426

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 167/429 (38%), Positives = 254/429 (59%), Gaps = 11/429 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGLS +++ AV D GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+L 
Sbjct: 3   KFNDLGLSAELLRAVADQGYSEPTPIQAQAIPAVLNGGDILAAAQTGTGKTAGFTLPVLQ 62

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L         R  R L+L PTRELAAQV  +   YGK   L  A++ GG+    Q   L
Sbjct: 63  RLSDTPVSSGRRPVRALVLTPTRELAAQVGASVADYGKYLPLRSAIVFGGVKINPQISML 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LDH ++  + ++ +EIL++DEADRMLDMGFI  I+ + +L+P  RQ
Sbjct: 123 RKGVDILVATPGRLLDHVSQKTVDLSKVEILILDEADRMLDMGFIRDIRKVLALLPKKRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +D++++++++ L  P  IEV   ++ +E +E           ++       +
Sbjct: 183 NLLFSATFSDDIKRLADSLLNTPTLIEVARRNTASEQVEQSVHLIEKSRKREL---LSHM 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  ++F   K+    L   LEK G    AIHGN  Q +R K L++FK G  +++
Sbjct: 240 IGSQNWQQVLVFTRTKRGANRLAQQLEKDGLKSTAIHGNKTQGARTKALADFKAGRARVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + +V N+++P+  E+Y+HRIGRTGRAGR GKA +LV  E+ K +  
Sbjct: 300 VATDIAARGLDIDQLPNVVNYELPDVPEDYVHRIGRTGRAGRDGKAVSLVCSEEKKQLRD 359

Query: 360 IEKLIEKKV--DWLNG-DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           IE+L+++ +  + + G ++S+ N P  +   +Q   + + N  P ++   D  +KN  S 
Sbjct: 360 IERLLKRPIAKEVIAGYEVSTTNKPTAR-PASQPRKSAQRNQRPNRNA--DAGQKNAWSG 416

Query: 417 KSHIPLKES 425
           +     + +
Sbjct: 417 RRKPSSRAA 425


>gi|296210930|ref|XP_002752172.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
           [Callithrix jacchus]
          Length = 455

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 136/433 (31%), Positives = 220/433 (50%), Gaps = 7/433 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++  +  A    G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 25  TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++G            +
Sbjct: 85  ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      I    N     +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++          SK        + 
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ---YYIFIPSKFKDTYLVYIL 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI KK+         +    E++  AQ     +     +K        ++    +  I
Sbjct: 379 EHLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREHGEKKKRSREDARDNDDTEGAI 438

Query: 421 PLKESEKISKLQQ 433
            ++      K+++
Sbjct: 439 GVRNKVAGGKMKK 451


>gi|289663283|ref|ZP_06484864.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 640

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 143/371 (38%), Positives = 222/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV + GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 11  FADLGLSGAVMKAVTNVGYESPSPIQAATIPALLSGRDVLGQAQTGTGKTAAFALPVLSN 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
            +  + +   P+ L+L PTRELA QVA+ F+KY +       L +  G P+  Q   L+R
Sbjct: 71  ADLNQLK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P  + +   ++T+  I   +      +          ++ 
Sbjct: 188 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEP 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   IIF   K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++VA
Sbjct: 248 FDGM---IIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HV N+D+P   E+Y+HRIGRTGRAGR+G A   V   +   + +IE
Sbjct: 305 TDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIE 364

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 365 RATRQPIEEMQ 375


>gi|319653101|ref|ZP_08007203.1| hypothetical protein HMPREF1013_03818 [Bacillus sp. 2_A_57_CT2]
 gi|317395022|gb|EFV75758.1| hypothetical protein HMPREF1013_03818 [Bacillus sp. 2_A_57_CT2]
          Length = 463

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 145/450 (32%), Positives = 234/450 (52%), Gaps = 17/450 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LG+S K+   +L  G  KPTPIQ + IP V++  D+   AQTGTGKT +F+LP+L 
Sbjct: 3   DFLTLGISKKLTNILLSHGIGKPTPIQEQAIPAVMEGRDIIAQAQTGTGKTFAFILPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            L+         + LI+ PTRELA Q+ D  +K     +    L + G    + Q  KL+
Sbjct: 63  KLDP---DAVHIQALIVTPTRELALQITDEVQKLTAGDDDLEVLAVYGGQDVDKQLNKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+LDH  R  + ++  + LV+DEAD+ML +GF+  +++I    P  RQT
Sbjct: 120 KKVQIVVGTPGRLLDHIKRKTIDLSQADFLVLDEADQMLHIGFLDEVEDIIKETPGKRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+  E++ ++   ++ P+ +++      A+++            +        L 
Sbjct: 180 MLFSATIPAEIRNLARKHMKEPEYMQIEKTQGPAQSV---KQIAIHTIDRAKQATLMQLI 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IFC  K+ V  L   L+  GF    +HG++ Q  R +++  F++  +QL+V
Sbjct: 237 QTHRPYLAVIFCRTKRRVSKLNDVLKSNGFQCDELHGDLSQSKREQVMKRFRDAELQLLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+Y+HRIGRTGRAG  G A T  +  D   ++AI
Sbjct: 297 ATDVAARGLDVEGVTHVFNYDIPLDPESYVHRIGRTGRAGMKGMAITFYSSADKPLLEAI 356

Query: 361 EKLIEKKVDWLN-GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           EK +   +   N G+      P         + + + N   QK      RKKN + + + 
Sbjct: 357 EKGLNITISKQNLGNSQERQKP---------SRSSEKNSQVQKIPASSGRKKNDNREDAD 407

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNM 449
               E +      +  Q  ++  L   G++
Sbjct: 408 RKKTEGKTSPAKGRKGQRKNSKPLNSAGHV 437


>gi|148237396|ref|NP_001085167.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Xenopus laevis]
 gi|47938654|gb|AAH72214.1| MGC81303 protein [Xenopus laevis]
          Length = 448

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 145/437 (33%), Positives = 237/437 (54%), Gaps = 11/437 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++  +  A    G+ +PT IQI+ IP+ LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 20  TFRDLGVTDVLCEACEQLGWKQPTKIQIEAIPMALQGRDIIGLAETGSGKTGAFALPILQ 79

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 80  TLLESPQRLYA---LVLTPTRELAFQISEQFEALGSSIGVKSAVIVGGIDMMSQSLALAK 136

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K      I+ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 137 KPHIVIATPGRLIDHLENTKGFNLRAIKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+    L++P +  V++   T E ++          SK        + 
Sbjct: 197 FLFSATMTKKVHKLQRAALKDPVKCAVSSKYQTVEKLQQ---FYVFIPSKFKDSYLVYIL 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N   +   L   GF+   +HG + Q  R+  L+ FK  +  +++
Sbjct: 254 NELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMGQNKRLGALNKFKAKSRSILL 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V++ D++    I
Sbjct: 314 ATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRI 373

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI KK+         +    E++  AQ     +     +K     +R +N +      
Sbjct: 374 EHLIGKKLPAFPTQEEEVMMLNERVSEAQRFARIELREHGEK----KKRPRNDADDDKEG 429

Query: 421 PLKESEKISKLQQDIQE 437
            L   +K++  +   ++
Sbjct: 430 SLGVRKKVTGGKFKKKK 446


>gi|295095196|emb|CBK84286.1| Superfamily II DNA and RNA helicases [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 422

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 139/411 (33%), Positives = 206/411 (50%), Gaps = 9/411 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKV+ A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVIEALETKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAV 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
            AIE  I   +     +    LS L PP         N  R++   P+   
Sbjct: 369 PAIETYIGHSIPQSKYNPDALLSELPPPKRLTRPRSGNGPRRSGGAPRNRR 419


>gi|15836797|ref|NP_297485.1| ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
 gi|9104994|gb|AAF83005.1|AE003873_2 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
          Length = 446

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 155/431 (35%), Positives = 236/431 (54%), Gaps = 12/431 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LGL P ++ A+ + GY  PTPIQ + IPL L  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MNFETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L    + V    PR L+L PTRELA QV D+   Y K   ++ A++ GG+    Q   
Sbjct: 61  QRLMAASSNVGAGKPRALVLTPTRELATQVYDSLRGYAKYQRVSSAVIYGGVGMGNQLDV 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+LI  PGR++DH  R  + ++ + ILV+DEADRMLDMGF+P I+ I   +P   
Sbjct: 121 LRRGVDLLIACPGRLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPRQN 180

Query: 179 QTL-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +   LFSAT  + +++++  F+  P+ + V + ++ AETI H          ++  L   
Sbjct: 181 RQTLLFSATFAEPIKQLALEFMCRPREVMVASHNTVAETITHRVHPVDVSRKRELLLHLL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              S++     +   +    +          G    AIHGN  Q  R++ L++FK G + 
Sbjct: 241 AQDSREQTLVFVRTKHGSDKLATFLEK---YGIKTAAIHGNKTQGQRLRALNSFKAGRVT 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LV +ED K +
Sbjct: 298 VLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS-- 415
             I +L+++ +D    D+    P +  I        +   P  Q      + ++ +    
Sbjct: 358 RQIVRLLDRDMDI--RDVPDFEPQV-PIRWGNSAPGKSKQPAGQHPPRKSQHRRAFGKAS 414

Query: 416 -QKSHIPLKES 425
            Q +H   K+S
Sbjct: 415 VQTAHALTKQS 425


>gi|291486518|dbj|BAI87593.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. natto BEST195]
          Length = 479

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 142/424 (33%), Positives = 229/424 (54%), Gaps = 20/424 (4%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M  F +  +S  ++ A+   GY +PT +Q   IP  L+R D+   +QTG+GKTASF +P+
Sbjct: 1   MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +    +   P+ LIL PTRELA QV ++    G+   +    + G   F+ Q  +L
Sbjct: 61  CELADWDENK---PQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAEL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++ + +++ TPGR+LDH  +G L ++ +  LVIDEAD ML+MGFI  ++ I   +P  R 
Sbjct: 118 KQKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERT 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT+ ++++K+S  ++QNP+ IE+     T   IEH   A      +    L + +
Sbjct: 178 TMLFSATLPEDIEKLSRQYMQNPEHIEIKAAGLTTRNIEH---AVIQVREENKFSLLKDV 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +   + IIFC  K++V  L   L+  G+    IHG + Q  R  +++ FK G  + +
Sbjct: 235 LMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI ++  V N+D+P   E+Y+HR GRTGRAG  GKA + V   + + +  
Sbjct: 295 VATDVAARGIDIENISLVINYDLPVEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLAD 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+ I  ++  +                +Q   ARK      K       KK+ S + + 
Sbjct: 355 IEEYIGFEIQKIEAP-------------SQEEVARKKPEFLAKLNDRPESKKDKSEELNK 401

Query: 420 IPLK 423
             +K
Sbjct: 402 DIMK 405


>gi|195474915|ref|XP_002089735.1| GE19250 [Drosophila yakuba]
 gi|194175836|gb|EDW89447.1| GE19250 [Drosophila yakuba]
          Length = 527

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 120/441 (27%), Positives = 198/441 (44%), Gaps = 12/441 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +V  +   G    TPIQ K IP +L   D  G A+TG+GKT +F LP+L  
Sbjct: 9   FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILER 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PT ELA Q+++ F   G+   + V ++ GG     +++KL + 
Sbjct: 69  LSE---EPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQR 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++  PGR+ DH         +    ++ +    +  G       I        +  L
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKTRQNL 185

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSST---AETIEHCFVATYAQYSKKCALLQQLL 239
           F +    +  K S  F       E +  S         +   +              +  
Sbjct: 186 FFSATMKDFIKESSIFPIARDCFEWSQDSDVATVDTLDQRYLLCADYDRDMVLIEALRKY 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++   N +IF N KK    L  +L+        +HG + Q+ R+  LS FK   I+ +
Sbjct: 246 REENENANVMIFTNTKKYCQLLSMTLKNMDIDNVCLHGFMRQKERVAALSRFKSNQIRTL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           +A+D+AARGLDIP V  V N  +P   + YIHR+GRT RAGR G + ++     D++ + 
Sbjct: 306 IATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLG 365

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           AIE+ I  K+     D       +E+I   Q N  R+ + +   +  FD R +NY  +  
Sbjct: 366 AIEEEINTKLTEHPID----QRMVERI-FMQVNVTRRESEMQLDNNDFDERAQNYRRKTW 420

Query: 419 HIPLKESEKISKLQQDIQEND 439
            +  K+ +++  L +  Q++ 
Sbjct: 421 IMEGKDPDQMEALYRKKQKDK 441


>gi|42784637|ref|NP_981884.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987]
 gi|42740569|gb|AAS44492.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           ATCC 10987]
          Length = 481

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 138/418 (33%), Positives = 236/418 (56%), Gaps = 15/418 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FFEYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  ++  P  IE+     T + IEH     +     +   L + + + 
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEH---TLFEAIEDEKFSLLKDVTTI 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 240 ENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 363 LIEKKV---------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            I  ++         + + G  +       K  I +  +A  N  I +      ++KK
Sbjct: 360 YIGFEIPKAIGPSKEEVMKGKAAFEEKIHAKPIIKKDKNADINKGIMKLYFNGGKKKK 417


>gi|228997517|ref|ZP_04157133.1| ATP-dependent RNA helicase [Bacillus mycoides Rock3-17]
 gi|228762256|gb|EEM11186.1| ATP-dependent RNA helicase [Bacillus mycoides Rock3-17]
          Length = 433

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 143/440 (32%), Positives = 239/440 (54%), Gaps = 16/440 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+V+   D+ G A+TGTGKT +FVLP+L 
Sbjct: 3   NFLELGISETFNHTLRENGIAEATPIQEKAIPVVMAGKDIIGQAKTGTGKTLAFVLPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    EK   +      L I G      Q +KL+
Sbjct: 63  KIDPESSDVQA---LIVAPTRELALQITTEIEKMLVHQENINVLAIYGGQDVAQQMRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  ++++N+ +LV+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETPESKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ +++ P+ I++ +   T   I            +      + + 
Sbjct: 180 MLFSATMPKDIKKLAKRYMKEPEMIQIQSAEVTVNNI---KQRVIETTDRAKQDALRHVM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K+    L   L+  G++   +HG++ Q  R +++ +F++  IQ ++
Sbjct: 237 DRDQPFLAVIFCRTKRRASKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFRDAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D  ++  I
Sbjct: 297 ATDVAARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGESGLAITFVAPKDEMYLKEI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR----KKNYSSQ 416
           EK I   +         L  P+++ D A     ++     +K+  + ++        + Q
Sbjct: 357 EKGIGATLQR-----QELELPVKQNDDASEKKKKQQIKKTKKTGQYGQKDNPGGSKNTKQ 411

Query: 417 KSHIPLKESEKISKLQQDIQ 436
           +S     E +   K  Q  +
Sbjct: 412 RSFHKPSEKKNSKKQGQQRR 431


>gi|285018817|ref|YP_003376528.1| ATP-dependent RNA helicase (cold-shock dead box protein)
           [Xanthomonas albilineans GPE PC73]
 gi|283474035|emb|CBA16536.1| probable atp-dependent rna helicase (cold-shock dead box protein)
           [Xanthomonas albilineans]
          Length = 657

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 142/371 (38%), Positives = 222/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   V+ AV + GY  P+PIQ  TIP +L   D+ G AQTGTGKTA+F LP+L+ 
Sbjct: 11  FADLGLCSAVMKAVAEIGYESPSPIQAATIPALLTGRDLLGQAQTGTGKTAAFALPILSR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+  + +   P+ L+L PTRELA QVA+ F +Y         L +  G P+  Q   L+R
Sbjct: 71  LDFAQRK---PQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQQLSALKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P +RQ  
Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPQSRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L +P  + + + ++T+  I   + A    +          ++ 
Sbjct: 188 LFSATMPAAIKRIAQTYLNDPAEVIIASKTTTSANIRQRYWAVSGLHKLDALTRILEVEP 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   IIF   K     L   L+ +G +  AI+G+I Q  R +++   K+G + ++VA
Sbjct: 248 FDAM---IIFARTKAGTDELAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKLDILVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   V+  +   + AIE
Sbjct: 305 TDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLRAIE 364

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 365 RATRQPIEEMQ 375


>gi|167624931|ref|YP_001675225.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167354953|gb|ABZ77566.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 436

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 166/440 (37%), Positives = 248/440 (56%), Gaps = 8/440 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F+ LGLS  +V AV + GY  PTPIQ KTIP++L + ++   AQTGTGKTASFVLP+ 
Sbjct: 1   MPFSKLGLSTPIVKAVTEQGYTSPTPIQAKTIPVILSQRNLIAAAQTGTGKTASFVLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +      R +  R LIL PTRELA QV DN  +YGK+  LT   + GG+  + Q ++L
Sbjct: 61  EMLSRSETQRKKRIRALILTPTRELAVQVEDNISQYGKHLALTSMAMYGGVDSKPQRERL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + +EILV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDELEILVLDEADRMLDMGFIEDINKIMEKLPVDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT++ ++++++        R    + +   +               K + L   L
Sbjct: 181 TLLFSATLSRQVKELA---RATIVRPIEISVTHNTDNKPKIEQWLVTVDKDKKSALLSHL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  +  +IF   K+    L   LEK+G +   IHG   Q  R +IL++FK G I L+
Sbjct: 238 IQENNWQQALIFIETKQGAAKLVSQLEKRGITAECIHGGRSQEIREQILADFKAGKIGLL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ +AARGLDI ++  V N+D+P  A++YIHRIGRTGRAG  G+A  LV+K+D K++  
Sbjct: 298 IATGIAARGLDIDELPLVINYDLPYPADDYIHRIGRTGRAGASGEAVALVSKDDFKNLCM 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE  +   ++    +  +   P +++ ++  N+  K+  I        R  K   S K++
Sbjct: 358 IESRLGHLIERREIEGFA---PRKEVPVSILNYKPKSKQIAGGDKKPHRDAKEPISHKAN 414

Query: 420 IPLKESEKISKLQQDIQEND 439
               ES++  K    +  N 
Sbjct: 415 NK-SESKESGKSPNKLPPNP 433


>gi|145638668|ref|ZP_01794277.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
 gi|145272263|gb|EDK12171.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
          Length = 439

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 137/398 (34%), Positives = 211/398 (53%), Gaps = 6/398 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F    LSP+++ A+   GY +PT IQ++ IP  ++  DV G A TGTGKT +F+LP + 
Sbjct: 5   QFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEECDVLGSAPTGTGKTTAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR L+L PTRELA QVA+  E+  +  +L +A + GG+ ++       
Sbjct: 65  HLLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QT
Sbjct: 125 TNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL       L N     V+   S  E  +      +A  ++    L     
Sbjct: 185 LLFSATLEGELLVDFAERLLNDPVK-VDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +  GI+F  ++++   L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 244 ETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPPL--EKIDIAQHNHAR 394
           ++  E+  K   L G      PP   E   +++   AR
Sbjct: 364 KRYTEEILKARILAGLEPRTKPPKDGEVKSVSKKQKAR 401


>gi|89256685|ref|YP_514047.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315095|ref|YP_763818.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502845|ref|YP_001428910.1| DEAD/DEAH box helicase domain-containing protein [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167010493|ref|ZP_02275424.1| hypothetical protein Ftulh_07207 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367994|ref|ZP_04984014.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
           holarctica 257]
 gi|290954278|ref|ZP_06558899.1| DEAD/DEAH box helicase domain-containing protein [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295312305|ref|ZP_06803094.1| DEAD/DEAH box helicase domain-containing protein [Francisella
           tularensis subsp. holarctica URFT1]
 gi|89144516|emb|CAJ79831.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129994|gb|ABI83181.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253804|gb|EBA52898.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
           holarctica 257]
 gi|156253448|gb|ABU61954.1| DEAD/DEAH box helicase domain protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 569

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 140/371 (37%), Positives = 216/371 (58%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGL+  +V  V+  GY  PTPIQ   IP +L   DV G AQTGTGKTA+F LP++ 
Sbjct: 8   DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++    R R P+ L+L PTRELA QVA+ FE + KN        I  G  + +Q + L+
Sbjct: 68  NMDLAS-RDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ T GR++DH  +G L ++N+  LV+DEAD ML MGFI  +Q + S V    Q 
Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVQFVLSHVSEQCQR 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++  + E +L+NP +I+V   + TA T+   F+                 +
Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETE 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +   IIF   K + + +  +L+  G+ V AI+G++ Q  R  I+  F+     ++V
Sbjct: 247 ETDGV---IIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+  + HV N+D+PN  + Y+HRIGRTGRAGR G + +LV  ++++ +  +
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363

Query: 361 EKLIEKKVDWL 371
           E+     +  +
Sbjct: 364 ERFTGSPMQEV 374


>gi|325289283|ref|YP_004265464.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964684|gb|ADY55463.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 382

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 153/371 (41%), Positives = 227/371 (61%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   ++ A+   GY  PTPIQ + IP VL+  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MKFEELNIITPIMKALKAEGYEAPTPIQERAIPAVLKGRDLLGCAQTGTGKTAAFSIPLL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            IL + R   R PRT+   IL PTRELA Q  +N   YGK   +   ++ GG+  +AQ +
Sbjct: 61  QILSRERINERAPRTIRALILAPTRELALQTGENLRAYGKYLGIKHTVIFGGVSQDAQTR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            ++ G D+L+ TPGR+LD   +G + +++I++LV+DEADRMLDMGF   ++ I + +P  
Sbjct: 121 AMKAGVDILVATPGRLLDLMGQGYVRLDHIKLLVLDEADRMLDMGFAHDMKRILAKLPAA 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTLLFSATM  E++ ++   L NP +IEV   SSTA+TI+           K   +   
Sbjct: 181 KQTLLFSATMPPEMKAMAGAILSNPVKIEVAPVSSTADTIDQSVYFVEKSGKKALLIELL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                 ++ + ++F   K    N+  +LEK      AIHGN  Q +R   L+NFK    +
Sbjct: 241 ---RNQSVDSALVFTRTKHGADNVVRALEKARIKAQAIHGNKSQAARQTALNNFKAKRTR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HV NFD+PN  E Y+HRIGRTGRAG  G A +    E+  ++
Sbjct: 298 VLVATDIAARGIDVQELSHVINFDLPNIPETYVHRIGRTGRAGMGGTALSFCDDEEKTYL 357

Query: 358 DAIEKLIEKKV 368
             I+KLI +++
Sbjct: 358 RDIQKLIAREI 368


>gi|297569384|ref|YP_003690728.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925299|gb|ADH86109.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 612

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 143/369 (38%), Positives = 215/369 (58%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ L L+P +  AV + G+  PTPIQ ++IP +L   D+ G AQTGTGKTA+F LP+L
Sbjct: 11  LSFSQLPLAPAIHRAVDELGFETPTPIQAESIPPLLAGRDLLGQAQTGTGKTAAFSLPLL 70

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + LE      + P+ L+L PTRELA QVA+  + + ++      L +  G     Q ++L
Sbjct: 71  SQLEV---DKKYPQLLVLAPTRELALQVAEAMQSFARHLPGFQVLPLYGGQNMTLQLRRL 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA V++ TPGRI DH  RG L +  +  +V+DEAD ML MGFI  ++ I    P  RQ
Sbjct: 128 QRGAQVVVGTPGRIQDHLRRGTLRLERLSAVVVDEADEMLKMGFIDAVEQILEHAPKERQ 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   ++K++   L+NP  I++   +++   I   F A    +           
Sbjct: 188 VALFSATMPTAVRKIAHRHLKNPVEIKIKRTTTSMAAITQQFWAVKGLHKLDALTRLLEA 247

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  + +   ++F   K   V L   LE +GF+  A++G++ Q+ R K +   K G + ++
Sbjct: 248 EEFEAV---LVFVRTKVATVELAEKLEARGFAAAALNGDMTQQMREKTIEQVKSGALDIV 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+DVP   E+YIHRIGRTGRAGR GKA   V   + + + A
Sbjct: 305 VATDVAARGLDVARITHVINYDVPYDTESYIHRIGRTGRAGRQGKAIIFVTPRERRLLAA 364

Query: 360 IEKLIEKKV 368
           IE+   +K+
Sbjct: 365 IEQASGQKI 373


>gi|183221518|ref|YP_001839514.1| ATP-dependent RNA helicase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911602|ref|YP_001963157.1| superfamily II DNA and RNA helicase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776278|gb|ABZ94579.1| Superfamily II DNA and RNA helicase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779940|gb|ABZ98238.1| ATP-dependent RNA helicase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 529

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 143/453 (31%), Positives = 238/453 (52%), Gaps = 9/453 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L     +  A+   GYV+ TPIQ K+IP  ++ +D+ G+AQTGTGKT +F+LP L
Sbjct: 1   MKFNELPFHESLSKALDKIGYVELTPIQAKSIPFAMEGNDLTGLAQTGTGKTMAFLLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L        +P  L+L PTREL  Q+A+  +K  +  +L VA +IGG  +++Q + L 
Sbjct: 61  HRLLSAEEEEALPYALVLAPTRELTIQIAEEAKKLLEFTDLGVATIIGGTDYKSQEQALG 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             A +++ TPGR++D      L + NI+++++DEADRM DMGF+  ++ I       +Q+
Sbjct: 121 NKACIIVATPGRLIDFVKNHGLSLENIKVVILDEADRMFDMGFVQDLKYIFHKCKNRKQS 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT++ E+ +++  +L +P  + +N      E         +    +K   L   L 
Sbjct: 181 LLFSATLSYEVVRLASKYLNDPIEVHINPEKVITER--IDQSLLHLGREEKLPYLVNSLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +      GIIF N K N+  +  +L + G +   +   +DQ+ R+++L +FK G  + ++
Sbjct: 239 NYPIEGLGIIFTNYKMNIPKIVSALRRFGITATGLSSELDQKKRIRLLRDFKAGKYKYLI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RG+DI ++  V+N+D+P  AENY+HRIGRT RAGR G++    ++ D   ++ I
Sbjct: 299 ATDVASRGIDIENIDVVYNYDLPQDAENYVHRIGRTARAGRKGQSIGFCSETDYTELERI 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EK +  K+         L  P       +      +  IP +    DR +     +    
Sbjct: 359 EKYLNSKIPVAEIREEYLEFPK-----GEFTPVFADEVIPGEKKYQDRERGGRGGKPR-- 411

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFM 453
             +  E+ S   +    N        G+ PA M
Sbjct: 412 QGERGERGSGEHRSGDRNRHKGKTGGGHPPAKM 444


>gi|156064127|ref|XP_001597985.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|160380609|sp|A7E449|DBP2_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp2
 gi|154690933|gb|EDN90671.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 572

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 211/380 (55%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+  PTPIQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 150 TFDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 209

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 210 HINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGGQIRDL 269

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 270 AKGVEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQIRPDRQ 329

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T ++SAT   E++ ++ ++L +  ++ + +   +A       V   +++ K+  + + L 
Sbjct: 330 TCMWSATWPKEVRALASDYLNDFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTKHLE 389

Query: 240 QSQDTMKNGIIFCNQKKNV-VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   N I+     K V  ++   L + G+   +IHG+  Q  R  +L+ FK G   +
Sbjct: 390 KIMEDKDNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPI 449

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ ++ HVFN+D PN +E+YIHRIGRTGRAG+ G A TL   ++ K   
Sbjct: 450 MVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITLFTTDNQKQAR 509

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    ++  L+ +
Sbjct: 510 DLVNVLTEAKQVIDPRLAEM 529


>gi|281345231|gb|EFB20815.1| hypothetical protein PANDA_010757 [Ailuropoda melanoleuca]
          Length = 404

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 129/373 (34%), Positives = 203/373 (54%), Gaps = 7/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +    + KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 39  TFDTMGLREDLLRGIYA--FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 96

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 97  CLDI---QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 153

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 154 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 213

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 214 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 271

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 272 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 331

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 332 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 391

Query: 362 KLIEKKVDWLNGD 374
           +    ++D +  +
Sbjct: 392 QYYSTQIDEMPMN 404


>gi|195127173|ref|XP_002008043.1| GI12051 [Drosophila mojavensis]
 gi|193919652|gb|EDW18519.1| GI12051 [Drosophila mojavensis]
          Length = 797

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 131/400 (32%), Positives = 215/400 (53%), Gaps = 3/400 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F   G   +++ AV  A Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ P+  
Sbjct: 276 SFGHFGFDDQLLKAVRKAEYTQPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFIWPLLT 335

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + ++       P  LIL PTREL+ Q+ +  +K+GK YN+ V    GG     Q+K L
Sbjct: 336 HLMDQRELRAGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSKAL 395

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G ++++ TPGR++D        +  +  LV+DEADRM  MGF P +++I + V   RQ
Sbjct: 396 EQGCEIVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQ 455

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    +++++ + L +P RI     +   + I            K   LL  L+
Sbjct: 456 TLLFSATFKKRIERLARDILTDPVRIVQGDLNEANQDITQHVYVFPNPLQKWNWLLCHLV 515

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        ++F  +K +   + ++L  + ++   +HG++DQ  R K+++ FK     ++
Sbjct: 516 KFLSEG-AVLVFVTKKADAETVANNLLVKEYNCLLLHGDMDQADRNKVITQFKRKECDIL 574

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + +V N+D+    + + HRIGRTGRAG  G A+TLV  +D +    
Sbjct: 575 VATDVAARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAYTLVTDKDKEFAGH 634

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           + + +E     +  DL  L         ++    +   P+
Sbjct: 635 LVRNLEGADQTVPDDLMELAMKSSWFRSSRFKQGKGRKPV 674


>gi|329116940|ref|ZP_08245657.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parauberis
           NCFD 2020]
 gi|326907345|gb|EGE54259.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parauberis
           NCFD 2020]
          Length = 537

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 141/373 (37%), Positives = 217/373 (58%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +        + + L++ PTRELA Q  +   ++G++  + V  + GG   + Q K L+
Sbjct: 61  NKVRTDE---NIIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIDKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L ++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPANRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F    K  E     +   T  +          ++       L 
Sbjct: 178 LLFSATMPAPIKQIGVKF---MKEPEHVQIKNKELTNVNVEQFYVRVKEQEKFDTMTRLM 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   + ++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI DV HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISDVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKQMTPLKP 367


>gi|317401375|gb|EFV82010.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
          Length = 591

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 165/476 (34%), Positives = 254/476 (53%), Gaps = 24/476 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F +LGL+P ++ A+ DAG+  PT +Q   IP  L  HD+   +QTG+GKTA+F+LP +
Sbjct: 1   MSFENLGLAPALLSALQDAGFTTPTTVQASAIPQALAGHDLMVSSQTGSGKTAAFMLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
             I +    +    + L+L PTRELA QV D    YG+       A ++GG+P+ AQ K 
Sbjct: 61  HRIAQMPANKGVGVQVLVLAPTRELALQVTDATATYGRKLADLRTATVVGGMPYGAQLKA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R  DVL+ TPGR++DH N G++ +N +  LV+DEADRMLDMGFI  I+ I S +P  R
Sbjct: 121 LSRRVDVLVATPGRLIDHLNSGRVKLNTVHTLVLDEADRMLDMGFIEDIETIISRLPVER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+   + K++   +++P+RIEV         I    +       K    L   
Sbjct: 181 QTLLFSATLDGTVAKLAARMMRDPQRIEVAGAKEKHTNITQSLLYADDASHK--MQLLDH 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +    ++   I+F + K+   +L   L  QGF+  A+HG+++QR R + LS  + G +++
Sbjct: 239 VLRDASLDQAIVFTSTKRGADDLADHLADQGFAAAALHGDMNQRQRTRTLSQLQRGQLRI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + H  NFD+P +AE+Y+HRIGRTGRAGR+G AFTL    +   + 
Sbjct: 299 LVATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRTGRAGRNGLAFTLATHSERHKVR 358

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK-----------STGFD 407
            IE  I + +      ++ L P       +     R   P  ++             G  
Sbjct: 359 RIEHYIGQSIT--PEVIAGLEPKRTPRP-STGGAPRGGKPFGKRPGGFGGGYQGHRDGGS 415

Query: 408 RRKKNYSSQKSHIPLKE-----SEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
           R  +++   +     +E     + +    Q +    D  +  F G+ P+F     R
Sbjct: 416 REGRSFGGPRGEFKPREGGYQGAREGGGYQGNRPFGDRPARSF-GDRPSFGDRPQR 470


>gi|255013264|ref|ZP_05285390.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_7]
          Length = 426

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 141/432 (32%), Positives = 236/432 (54%), Gaps = 14/432 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   V+  + D  + + TP+Q  TIP++L+  D+   AQTGTGKTA++VLP++
Sbjct: 1   MRFDELDLEDAVLDGLYDMNFDETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG----GIPFEAQN 116
             L KG         +I+ PTRELA Q+    + +        A+ +     GI +E Q 
Sbjct: 61  NELSKGCHPTDAVNAVIMAPTRELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQK 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + LE GAD++I TPGR+L H   G + ++ +   V+DEADRMLDMGF   I  +   +P 
Sbjct: 121 RGLEMGADIVIATPGRLLSHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             QT++FSATM  +++ +++  L++P+ +++         ++  ++    Q  K    + 
Sbjct: 181 YCQTIMFSATMPPKIRTLAKTILKDPEEVKIAISRPPESIMQTAYICYDPQKLK----IL 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q L +Q   +  IIF + K  V  L  +L++  F+V A+H +++Q  R +++  FK G I
Sbjct: 237 QDLFTQSRPQRVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIK 355
            ++VA+D+ ARG+DI D+  V NFD+P+  E+Y+HRIGRT R     G A T V+ ++  
Sbjct: 297 DILVATDVVARGIDINDIKLVVNFDIPHDPEDYVHRIGRTARGTNGEGLAITFVSIDEQA 356

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
               IE  +EK+V  +         PL   +  ++   ++    P+KS   + ++ + S 
Sbjct: 357 QFKRIEDFLEKEVYKIPVSPEFGEVPL--YEPEKYGMNKRGRGRPRKS---EDKRSSSSP 411

Query: 416 QKSHIPLKESEK 427
           QK ++  +   K
Sbjct: 412 QKRNMGHRGRPK 423


>gi|294657345|ref|XP_459659.2| DEHA2E08052p [Debaryomyces hansenii CBS767]
 gi|91207781|sp|Q6BQ61|RRP3_DEBHA RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|199432622|emb|CAG87892.2| DEHA2E08052p [Debaryomyces hansenii]
          Length = 477

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 142/425 (33%), Positives = 226/425 (53%), Gaps = 14/425 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L L P+++ A+    + KPTPIQ + IP  L+  D+ G+AQTG+GKTA+F +P+L 
Sbjct: 66  SFNELKLIPELLEAIQQMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQ 125

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L + +A       L+L PTRELA Q+ + F+  G +  L    ++GG+    Q + L R
Sbjct: 126 ALWEAQAAYY---GLVLAPTRELAYQIKETFDALGSSMGLRSVCIVGGMDMMDQARDLMR 182

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +L+ TPGRI+DH  +     + N++ LV+DEADR+LDM F P +  I  ++P  R T
Sbjct: 183 KPHILVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKIIPTQRTT 242

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT+++ K+    L NP R+ V+    TA+ +     +               L 
Sbjct: 243 YLFSATMTNKIAKLQRASLHNPVRVAVSNKYQTADNL---VQSMMLVSDGYKNTYLIHLL 299

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   K+ IIF     +           GFS   +HG + Q  R+  L+ FK G   +++
Sbjct: 300 NEFLGKSIIIFTRTCAHSQRTALLARILGFSAVPLHGQLTQAQRLGSLNKFKAGKANILI 359

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V N+D+P  ++ YIHR+GRT RAG+ GK+ +L+ + D++    I
Sbjct: 360 ATDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGKSGKSISLITQYDLEMYLRI 419

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E ++ KK+          +P    +D    +  R +    +++  F   K+N    +   
Sbjct: 420 ESVLGKKLP------KDPSPSKAVLDTLHVHVDRASAEAIRQTKDFHE-KRNPKKNRDDR 472

Query: 421 PLKES 425
             +E 
Sbjct: 473 DREER 477


>gi|52145260|ref|YP_086717.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
 gi|51978729|gb|AAU20279.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
          Length = 481

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 147/476 (30%), Positives = 251/476 (52%), Gaps = 21/476 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++  LS +V  A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++++S  ++  P  IE+     T + IEH     +    ++   L + + +
Sbjct: 182 LFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEH---TLFEVREEEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++  +    IHG + Q  R  ++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIE 358

Query: 362 KLIEKKV---------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK- 411
             I   +         + + G  +       K  I +   A  N  I +      ++KK 
Sbjct: 359 AYIGFAIPKANAPSKEEVMKGKAAFEEKIQAKPTIKKDKSADINKGIMKLYFNGGKKKKI 418

Query: 412 ---NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
              ++    + I    +E I  +   IQ+N +      G  P  +       +  K
Sbjct: 419 RAVDFVGTIAKIQGVSAEDIGII--TIQDNVSYVEILNGKGPLVLKIMRNTTIKGK 472


>gi|54302661|ref|YP_132654.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46916085|emb|CAG22854.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
          Length = 474

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 132/448 (29%), Positives = 217/448 (48%), Gaps = 7/448 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL P+++  +   G+ + T IQ   +P+ +   DV   ++TG+GKT +F+LP +
Sbjct: 28  LHFKDLGLDPRLLKKLTHLGFERATEIQRTAVPVAIMGKDVLASSKTGSGKTLAFLLPAM 87

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +G     R  R LIL PTRELA QV               AL++GG  F  Q K+ 
Sbjct: 88  QRMYRGKPFTRRDQRVLILTPTRELAKQVFAQLRTLNAGTPYDGALIVGGENFNDQVKEF 147

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +    ++ TPGR  DH       ++ +E+L++DEADRMLD+GF P ++ I  L    R+
Sbjct: 148 RKDPMFVVATPGRFADHLEHRSTSLDGLEMLILDEADRMLDLGFAPQLRRIHELANHRRR 207

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D    +            ++  SS  E  +         +      L   +
Sbjct: 208 QTLMFSATMDNEDVIEMASEMLNAPKRLSIGSSNEEHTDITQRFYLCDHLDHKQALLDKV 267

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   + +   L   L ++     A+ GN++Q  R  I+S F+    +++
Sbjct: 268 LETEDYNQVIIFTATRADTDRLTAELNERKLKAVALSGNLNQNQRNSIMSQFERVCHKIL 327

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDI  V HV NFD+P  AE Y+HR+GRTGRAG  G A +LV  +D K   +
Sbjct: 328 VTTDVASRGLDIEGVSHVINFDMPKHAEEYVHRVGRTGRAGNKGDAISLVGPKDWKSFKS 387

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +E  +++ + +     L G    L P  +K  I +    +K +   +KST    +KK   
Sbjct: 388 VEAYLQQSISFSVFEGLAGKFKGLKPAPKKKFIKKKPTDQKAS-AAKKSTAPKAKKKVDK 446

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADS 442
               ++ + E+    K ++++  +  D+
Sbjct: 447 RFYDNVAVGENVFKPKKKRNVDVSKDDA 474


>gi|117920819|ref|YP_870011.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117613151|gb|ABK48605.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 491

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 152/422 (36%), Positives = 234/422 (55%), Gaps = 11/422 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F+ LGL   +V AV + GY  PTPIQ K IP +L   +V   AQTGTGKTASFVLP +
Sbjct: 1   MPFSQLGLHSALVKAVTELGYTTPTPIQTKAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +  + R +  R +IL PTRELA QV +N  +Y K   LT   + GG+    Q K+L
Sbjct: 61  HRFADAPKIRPKRVRAIILTPTRELALQVEENINQYAKYLPLTAMAMYGGVDAAPQKKRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + + +LV+DEADRMLDMGFI  I +I   +P  RQ
Sbjct: 121 IEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINSIIEKLPEQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++ ++++ + +   IE++     +    H           K + L   L
Sbjct: 181 NLLFSATLSKQVKALAKSAIPDAIEIEISR---KSAASTHIDQWLTTVDKDKKSALLSHL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      +IF   K     L   LEK+G    A H    Q  R ++L +FK G +  +
Sbjct: 238 IQEQNWSQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLIDFKAGKVSFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +A+RG+DI  +  V N+D+P+ A++YIHRIGRTGRAG  G+A + V+K+D +++ A
Sbjct: 298 VATGVASRGIDIDALARVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           IE+ +   +  +  +++   P    P+  +D    + ++     P      + + + YSS
Sbjct: 358 IERRLGHVI--VRREIAGFEPKKVVPISILDFVPKSASKTERK-PNSPAETNLQSRPYSS 414

Query: 416 QK 417
            K
Sbjct: 415 GK 416


>gi|86144589|ref|ZP_01062921.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           MED222]
 gi|85837488|gb|EAQ55600.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           MED222]
          Length = 443

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 124/424 (29%), Positives = 204/424 (48%), Gaps = 8/424 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + K T IQ K IP+ +   D+   ++TG+GKT +FVLPM+
Sbjct: 1   MHFKDLGLDNRLLKNLKHYDFKKATEIQSKAIPVAIAGKDLLASSKTGSGKTLAFVLPMI 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR +IL PTRELA QV           +    L++GG  F  Q K L
Sbjct: 61  HKALKTKAFSAKDPRGVILAPTRELAKQVYGELRSMLGGLSYEATLILGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +    ++ TPGR+ DH     L ++ +E L++DEADRMLD+GF P ++ I +     R+
Sbjct: 121 RKYPRFIVATPGRLADHLEHRSLFLDGVETLILDEADRMLDLGFAPELRRIANAAKHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +              ++   S  + ++         +      +   +
Sbjct: 181 QTLMFSATLDHAEVNDIANEMLDSPKRISVGVSNEQHLDITQKFYLCDHLDHKEAILDRV 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  +IF   + +   L   L ++     A+ GN++Q  R  I+S F+    +++
Sbjct: 241 IEEAEYRQVMIFTATRADTDRLTEKLNEKKLKAVALSGNLNQTQRNAIMSQFERAVYKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RG+DIP+V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D      
Sbjct: 301 VTTDVASRGIDIPNVSHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKR 360

Query: 360 IEKLIEKK-----VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +E  +++      ++ L G    + P   K   A+   A+K      K T     K++ S
Sbjct: 361 VELYLQQDLTFSVLEGLKGKFKGIKP--RKPAFAKGGPAKKKTNTQAKKTPKKPVKRDKS 418

Query: 415 SQKS 418
             K+
Sbjct: 419 FHKN 422


>gi|325204407|gb|ADY99860.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240355]
          Length = 457

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 157/447 (35%), Positives = 252/447 (56%), Gaps = 29/447 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +      +
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNL---LE 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 242 RLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           ++I++L   K+             +E+I+  +     +    P+K+   + R++N     
Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKTETSEPRQRNRY--- 406

Query: 418 SHIPLKESEKISKLQQDIQENDADSLG 444
                 ES +  + +    E  A+  G
Sbjct: 407 ------ESARAQREKNTRPETTANDAG 427


>gi|319795121|ref|YP_004156761.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS]
 gi|315597584|gb|ADU38650.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
          Length = 496

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 166/420 (39%), Positives = 238/420 (56%), Gaps = 11/420 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L+  +  AV + GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L 
Sbjct: 4   SFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLPLLQ 63

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + K       P        +L PTRELA QVA   + Y K  NL   ++ GGI  + Q 
Sbjct: 64  RMLKHENASTSPARHPVRALVLLPTRELADQVAQQVKLYAKYTNLRSTVVFGGIDMKPQT 123

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P 
Sbjct: 124 LELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPK 183

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R TLLFSAT + E+++++ ++LQNP  IEV       ET        Y+          
Sbjct: 184 QRTTLLFSATFSPEIKRLAGSYLQNPVTIEVAR---PNETASTVEQHFYSVSDDDKRRAL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + +  Q  +    +F N K     L  SLE+ G    A+HG+  Q  R+K L++FK G +
Sbjct: 241 KQIVKQRGITQAFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLKALASFKAGEV 300

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIK 355
            L+V +D+AARGLDI DV  VFNFD+P  AE+Y+HRIGRTGRAG  G A +  +   D +
Sbjct: 301 DLLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFASGGNDAR 360

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +  IEKLI+KK++    +    + P  +I+  +  H R+           D+ ++  SS
Sbjct: 361 LVADIEKLIKKKIELEPVEFEE-DRPRGRINDGR-RHWREEGEAGDARDVLDQPRERSSS 418


>gi|313682743|ref|YP_004060481.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313155603|gb|ADR34281.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 431

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 165/434 (38%), Positives = 248/434 (57%), Gaps = 7/434 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L+  ++ A+ D GY  PTP+Q + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFTDLQLNDSLLKAINDQGYTTPTPVQAQAIPFILEGRDMLAGAQTGTGKTAGFTLPLL 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            I    K     R  R LIL PTRELAAQV ++ + YGK   L  A++ GG+    Q   
Sbjct: 61  QILSDRKQPKTHRKIRALILTPTRELAAQVGESVKLYGKYLPLKSAVIFGGVGINPQITM 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+LI TPGR+LDH  +G + ++ +EI V+DEADRMLDMGFI  I+ + +++P  R
Sbjct: 121 LRNGVDILIATPGRLLDHVGQGTVDLSGVEIFVLDEADRMLDMGFIRDIRRVITILPKVR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +D+++ ++   L+NP  +EV   ++++E ++   +       K+ + L   
Sbjct: 181 QNLLFSATYSDDIKTLANTLLRNPAEVEVARRNTSSELVKQSVILVDC---KRKSSLLGE 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +   +  ++F   K     L   L+K G +  AIHGN  Q +R K L +FK  ++++
Sbjct: 238 LIGKHKWEQVLVFTRTKHGANKLTEYLQKIGITAAAIHGNKSQSARTKALDDFKRSSVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV NF++PN AE+Y+HRIGRTGRAG  G+A +LV  ++  ++ 
Sbjct: 298 LVATDIAARGIDIDALPHVVNFELPNIAEDYVHRIGRTGRAGCEGEALSLVCVDEADYLR 357

Query: 359 AIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            IEKLI KK+D   + G     +   E I   +             ++G   +       
Sbjct: 358 GIEKLINKKLDARIIEGYEPDPSIKAEPIQRGRGGSGGGGGGNRGGNSGGGAKPAQKRDG 417

Query: 417 KSHIPLKESEKISK 430
             H P   + +  +
Sbjct: 418 GRHEPKHRTNERRR 431


>gi|302900149|ref|XP_003048204.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256729136|gb|EEU42491.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 487

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 114/377 (30%), Positives = 184/377 (48%), Gaps = 7/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +  L   ++  + +AG+ KP+PIQ + IP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 49  LEFENFALKRDLLMGIFEAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPAL 108

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +V   + LIL PTRELA Q +   +  GK+  + V +  GG        +L+
Sbjct: 109 ERI---NPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGVNVMVTTGGTGLRDDIIRLQ 165

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +    ++   + ++DEAD++L + F P I+ +    P  RQ 
Sbjct: 166 DPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQV 225

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F                 T+            K+       L 
Sbjct: 226 MLFSATFPLSVKD----FSDKNMVSPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 281

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 282 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMQQHARNRVFHDFRNGVCRNLV 341

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 342 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNI 401

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +   +  
Sbjct: 402 ERDLGTEIQPIPASIDK 418


>gi|145588789|ref|YP_001155386.1| DEAD/DEAH box helicase domain-containing protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047195|gb|ABP33822.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 473

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 160/378 (42%), Positives = 230/378 (60%), Gaps = 6/378 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FAD GL PK+  AV + GY  PTPIQ ++IP VL   D+ G AQTGTGKTA+FVLP++
Sbjct: 28  ITFADFGLDPKIQKAVAEQGYSIPTPIQAQSIPHVLAGSDLMGAAQTGTGKTAAFVLPII 87

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             + +  +    P        +L PTRELA QVA+N   Y K+ +L  A++ GG+  + Q
Sbjct: 88  QQILRHASNSASPARHPIRALVLTPTRELAVQVAENAASYSKHTDLRAAVVYGGVDMKEQ 147

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G ++LI TPGR+LDH       ++ +EILV+DEADRMLDMGF+P +Q I  L+P
Sbjct: 148 VAILRNGVEILIATPGRLLDHIGSKVANLSQVEILVLDEADRMLDMGFLPDLQRIIDLIP 207

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCAL 234
             RQTLLFSAT + E++K+++++L+ P  +EV   ++ A+T++       +    +    
Sbjct: 208 AQRQTLLFSATFSPEIKKLAQSYLRTPVTVEVARQNAAADTVKQVVHMVSSGDKQRAIVK 267

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + +        +  IIF N +     L  +LE+ G    AIHG+  Q  R   L  FK G
Sbjct: 268 VLEARTRLGLSRQCIIFTNSRLGCAKLARALERDGIKAGAIHGDKSQGERTLTLDAFKSG 327

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+ +VA+D+AARGLDIPD+  V N ++P  AE++IHRIGRTGRAG  G A  LV   + 
Sbjct: 328 AIEALVATDVAARGLDIPDMPCVINHELPYNAEDFIHRIGRTGRAGSKGDAIALVDASEK 387

Query: 355 KHIDAIEKLIEKKVDWLN 372
           + +D IEKL+++K+D   
Sbjct: 388 RLLDDIEKLMKRKLDVKP 405


>gi|17555296|ref|NP_499069.1| hypothetical protein T26G10.1 [Caenorhabditis elegans]
 gi|465975|sp|P34580|DDX47_CAEEL RecName: Full=Putative ATP-dependent RNA helicase T26G10.1
 gi|3880293|emb|CAA82362.1| C. elegans protein T26G10.1, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 489

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 135/412 (32%), Positives = 223/412 (54%), Gaps = 7/412 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+S  +  A    G++KP+ IQ   +P  LQ  DV G+A+TG+GKT +F +P+L 
Sbjct: 45  SFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQ 104

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L            L+L PTRELA Q+   FE  G    L  A+++GG+   AQ   L R
Sbjct: 105 SLLDHPQAFFC---LVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALAR 161

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR++DH    K      ++ L++DEADR+L+M F   +  I  ++P  R+T
Sbjct: 162 RPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRT 221

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+    L++P R+ V++     +T+++         +K        L 
Sbjct: 222 YLFSATMTKKVSKLERASLRDPARVSVSSRY---KTVDNLKQHYIFVPNKYKETYLVYLL 278

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + I+FC      + +   L + G     +HG + Q  R+  L+ FK    +++V
Sbjct: 279 NEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILV 338

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARGLDIP V  V N+D+P+++++Y+HR+GRT RAGR G A T+V + D++    I
Sbjct: 339 CTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKI 398

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           E  + KK+D      + +   +E+   A  N   +   + +K     +R++N
Sbjct: 399 EANLGKKLDEYKCVENEVMVLVERTQEATENARIEMKEMDEKKKSGKKRRQN 450


>gi|328956797|ref|YP_004374183.1| ATP-dependent RNA helicase RhlE [Carnobacterium sp. 17-4]
 gi|328673121|gb|AEB29167.1| ATP-dependent RNA helicase RhlE [Carnobacterium sp. 17-4]
          Length = 423

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 154/427 (36%), Positives = 232/427 (54%), Gaps = 6/427 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F +L L+  ++ A+ +AGY K TPIQ   IP ++   D+ G AQTGTGKTA+F LP+ 
Sbjct: 1   MLFNELELNQHLLHALKEAGYTKATPIQEDAIPHLMNNKDLLGCAQTGTGKTAAFALPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I+E+        + LIL PTRELA Q+ D+F+ Y K   L + ++ GG+    Q   L
Sbjct: 61  QNIMEEKTIGKGAIKALILAPTRELAIQIGDSFQTYAKYLPLNIQVIFGGVSQNPQTATL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG D+L+ TPGR+LD   +G + +N ++  V+DEAD MLDMG +  +++I   +P  RQ
Sbjct: 121 KRGTDILVATPGRLLDLIRQGFVKLNQVDFFVLDEADMMLDMGMLRDVRHIIRELPKKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           ++ FSATM  E++K++   L NP ++ VN  SST E I+               +     
Sbjct: 181 SMFFSATMPSEIEKLAGTILSNPVKVVVNPVSSTVEVIQQNVYRVAKTDKTNLLIYLL-- 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                ++  ++F   K     +   L + GFS  AIHGN  Q +R + L NFK     ++
Sbjct: 239 -KNKQVERSLVFSRTKHGANKIVKKLLQAGFSAEAIHGNKSQNARQQALENFKTMKTSVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P++  V  FD+P   E Y+HRIGRTGRAG  GKA +   + +   +  
Sbjct: 298 VATDIAARGIDVPELSQVIQFDLPEVPETYVHRIGRTGRAGLSGKAISFCDETESDLLRD 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP-PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           IEKL ++KV  +      L          A+   A +N+    KS    RR    ++Q+ 
Sbjct: 358 IEKLSKRKVPVIKDHPYLLKEGTQAPTQQARKAVATRNSGTRAKSKQV-RRGGQKAAQRP 416

Query: 419 HIPLKES 425
            +  K  
Sbjct: 417 RVQTKNR 423


>gi|323127665|gb|ADX24962.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 539

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 141/371 (38%), Positives = 222/371 (59%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +        + + L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  NKIRTNE---NIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L+++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ +++     T   ++  +V    Q             
Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKQMKPL 365


>gi|322412126|gb|EFY03034.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 539

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 141/371 (38%), Positives = 222/371 (59%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +        + + L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  NKIRTNE---NIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L+++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ +++     T   ++  +V    Q             
Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKQMKPL 365


>gi|290987403|ref|XP_002676412.1| predicted protein [Naegleria gruberi]
 gi|284090014|gb|EFC43668.1| predicted protein [Naegleria gruberi]
          Length = 407

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 131/380 (34%), Positives = 202/380 (53%), Gaps = 6/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH---DVCGIAQTGTGKTASFVLP 58
           +F D+ L   ++  +   G+ KP+ IQ + I  +       DV G AQ+GTGKTA+F + 
Sbjct: 30  EFDDMNLKEDLLRGIYSYGFEKPSIIQQRAILPITTSEPPADVIGQAQSGTGKTATFTIS 89

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L  L      V  P+ L+L PTRELA Q+       G+   + V   +GG   +     
Sbjct: 90  LLQRLNISP-DVIQPQGLVLAPTRELAQQIHKVIMSLGEYMKVKVHACVGGTKVQHDIAI 148

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G  +++ TPGR+      G L +N+I++LVIDEAD ML  GF   I  I   +P   
Sbjct: 149 LEEGVHIIVGTPGRVFHMIQSGHLNVNSIKMLVIDEADEMLSRGFKDQIYAIFKNLPQDM 208

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q  LFSATM  E+ ++++ F+++P RI V     T E I+  +++   +  K   L    
Sbjct: 209 QVCLFSATMPTEVLEITDKFMRDPIRILVKKEELTLEGIKQFYISVDREDYKFETLCDLY 268

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                +    +IFCN +K V  L   L K+ F+V  +HG +D + R  I+  F+    ++
Sbjct: 269 KVLTISQC--VIFCNSRKKVEQLAEQLNKKDFTVSCMHGEMDPKDRELIMHEFRTSASRV 326

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +DL ARG+D+  V  V NFD+P   ENY+HRIGR+GR GR G A   V K+D++ + 
Sbjct: 327 LITTDLLARGIDVHHVSLVINFDLPRHKENYLHRIGRSGRYGRKGVAINFVTKDDVRSLR 386

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            IEK     ++    +++ L
Sbjct: 387 EIEKFYSTSIEECPNNIAEL 406


>gi|251782861|ref|YP_002997164.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391491|dbj|BAH81950.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 539

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 141/371 (38%), Positives = 222/371 (59%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +        + + L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  NKIRTNE---NIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L+++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ +++     T   ++  +V    Q             
Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKQMKPL 365


>gi|256821317|ref|YP_003145280.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256794856|gb|ACV25512.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 434

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 158/371 (42%), Positives = 218/371 (58%), Gaps = 4/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L   ++ A+  +GY  P+PIQ K IPL+L   DV   AQTGTGKTA F LP+L
Sbjct: 1   MPFSKLDLIQPLLDALHKSGYKTPSPIQQKVIPLILNGQDVMAAAQTGTGKTAGFSLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G R      R LIL PTRELA QV  + +KY  N +L   ++ GG+    Q  KL
Sbjct: 61  QRLSEGKRPSANSARCLILTPTRELAEQVHQSVQKYAANLHLNSIVVYGGVKINPQMLKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DVL+ TPGR+LD   +  +  N++E LV+DEADRMLDMGF+P I+ I   +P  RQ
Sbjct: 121 RRGTDVLVATPGRLLDLMEQNAVRFNDLEFLVLDEADRMLDMGFLPSIKRIIGKLPKKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT ++ ++ +S+ FL NP  +       T  T        +    K+   L   L
Sbjct: 181 TLLFSATFSESIKAISQQFLTNPSLV---ETEQTNTTAATVKQWIHPVDKKQKPALLSYL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++F   ++    L   LEK+G    AIHG   Q +R + LS FK G + ++
Sbjct: 238 IGHHRWDQLLVFVRTRRGANKLSVDLEKRGIKATAIHGGKSQGARNRALSEFKSGKVTVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+D+PN AE+Y+HRIGRTGRAG  G A +LV+ +++  + A
Sbjct: 298 VATDVAARGLDIEQMPLVINYDLPNVAEDYVHRIGRTGRAGEKGTAISLVSADEVDDLRA 357

Query: 360 IEKLIEKKVDW 370
           I+ LI K ++ 
Sbjct: 358 IQDLIRKPLER 368


>gi|213406193|ref|XP_002173868.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces japonicus
           yFS275]
 gi|212001915|gb|EEB07575.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces japonicus
           yFS275]
          Length = 553

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 129/380 (33%), Positives = 205/380 (53%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+  PTPIQ +  P+ +   D+ GI+ TG+GKT S+ LP + 
Sbjct: 127 TFEEAGFPNYVLKEVQALGFESPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIV 186

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+G    +    + GG+P   Q + L
Sbjct: 187 HINAQPLLAPGDGPIVLVLAPTRELAVQIQQECTKFGHTSRIRNTCVYGGVPRGPQIRDL 246

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG ++ I TPGR+LD  + GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 247 ARGVEICIATPGRLLDMLDSGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 306

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++FSAT   E+Q+++ ++L++  ++ V +    A       V       K+  L + L 
Sbjct: 307 TVMFSATWPKEVQRLARDYLKDYIQVTVGSLDLAASHNITQIVEVVDPADKRARLSKDLE 366

Query: 240 QSQDTMKNGIIFCNQKKNV-VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ +  ++ ++     K V   +   L + G+   AIHG+  Q  R  +L+ F+ G   +
Sbjct: 367 KAMEDKESKVLVFTGTKRVADEITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPI 426

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+  + HVFNFD P   E+Y+HRIGRTGRAG  G A+T   +E+ K   
Sbjct: 427 MVATDVASRGIDVKGITHVFNFDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTQENSKQAR 486

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    ++  L  +
Sbjct: 487 DLIGILREAKQNIDPKLEEM 506


>gi|160380700|sp|A6SFW7|DBP2_BOTFB RecName: Full=ATP-dependent RNA helicase dbp2
          Length = 514

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 210/380 (55%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+  PTPIQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 103 TFDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 162

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 163 HINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGGQIRDL 222

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 223 AKGVEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQIRPDRQ 282

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T ++SAT   E++ ++ ++L    ++ + +   +A       V   +++ K+  + + L 
Sbjct: 283 TCMWSATWPKEVRALASDYLNEFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTKHLE 342

Query: 240 QSQDTMKNGIIFCNQKKNV-VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   N I+     K V  ++   L + G+   +IHG+  Q  R  +L+ FK G   +
Sbjct: 343 KIMEDKDNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPI 402

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ ++ HVFN+D PN +E+YIHRIGRTGRAG+ G A TL   ++ K   
Sbjct: 403 MVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITLFTTDNQKQAR 462

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    ++  L+ +
Sbjct: 463 DLVNVLTEAKQVIDPRLAEM 482


>gi|154298956|ref|XP_001549899.1| p68 RNA helicase [Botryotinia fuckeliana B05.10]
 gi|150857630|gb|EDN32822.1| p68 RNA helicase [Botryotinia fuckeliana B05.10]
          Length = 473

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 210/380 (55%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+  PTPIQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 62  TFDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 121

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 122 HINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGGQIRDL 181

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 182 AKGVEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQIRPDRQ 241

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T ++SAT   E++ ++ ++L    ++ + +   +A       V   +++ K+  + + L 
Sbjct: 242 TCMWSATWPKEVRALASDYLNEFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTKHLE 301

Query: 240 QSQDTMKNGIIFCNQKKNV-VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   N I+     K V  ++   L + G+   +IHG+  Q  R  +L+ FK G   +
Sbjct: 302 KIMEDKDNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPI 361

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ ++ HVFN+D PN +E+YIHRIGRTGRAG+ G A TL   ++ K   
Sbjct: 362 MVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITLFTTDNQKQAR 421

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    ++  L+ +
Sbjct: 422 DLVNVLTEAKQVIDPRLAEM 441


>gi|150025749|ref|YP_001296575.1| DEAD-box ATP dependent DNA helicase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772290|emb|CAL43768.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
           [Flavobacterium psychrophilum JIP02/86]
          Length = 414

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 155/415 (37%), Positives = 242/415 (58%), Gaps = 9/415 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  +  AV + GY+  TPIQ ++IP++L   D+ G AQTGTGKTA+F +P++
Sbjct: 1   MLFEDLSLSKSIQRAVFEEGYLSATPIQEQSIPIILAGQDLIGCAQTGTGKTAAFAIPII 60

Query: 61  TILEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L +      + ++ RTL++ PTRELA Q+ ++F+ YGK  NL    + GG+    Q +
Sbjct: 61  HNLHRIVGSSKKEKLIRTLVVTPTRELAVQIGESFDTYGKYTNLKQLTIFGGVSQNPQVE 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L+ G D+LI TPGR+LD   +G + ++++  LV+DEAD+MLDMGFI  ++ I  L P  
Sbjct: 121 QLKSGIDILIATPGRLLDLHKQGFINLDHMHHLVLDEADQMLDMGFINDVKKIVKLTPKN 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM   +++++E FL +P  ++V   SST ET++           ++      
Sbjct: 181 RQTLLFSATMPIAIRELAEMFLTDPATVQVAPVSSTIETVDQRLYYVDKADKRQL---LY 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  ++ + N ++F   K    N+  +L+KQG +  AIHG+  Q +R + L NFK     
Sbjct: 238 HIIKEEKLSNILVFSRTKHGADNIAKALKKQGLNAEAIHGDKSQNARQRALDNFKNKACD 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  + +V NFD+PN  E Y+HRIGRTGRAGR G A +   K++  + 
Sbjct: 298 ILVATDIAARGIDIEFLPYVINFDLPNIPETYVHRIGRTGRAGREGMAISFCGKDEEGYW 357

Query: 358 DAIEKLIEKK---VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             I KL + K   +D              K++ +  +  ++ +     S    +R
Sbjct: 358 KDIIKLTKAKVTTIDEHPFPWKKGAQEATKVNSSNRSGEKEKSRKSDASKKNKKR 412


>gi|15601523|ref|NP_233154.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121590875|ref|ZP_01678199.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121728661|ref|ZP_01681679.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V52]
 gi|147671636|ref|YP_001215545.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O395]
 gi|153818645|ref|ZP_01971312.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC
           8457]
 gi|153820657|ref|ZP_01973324.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           B33]
 gi|229506074|ref|ZP_04395583.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229510069|ref|ZP_04399549.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229605606|ref|YP_002876310.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254849928|ref|ZP_05239278.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
 gi|255746472|ref|ZP_05420419.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|262152368|ref|ZP_06028501.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
 gi|262168609|ref|ZP_06036305.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|9658191|gb|AAF96666.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121547282|gb|EAX57403.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121629072|gb|EAX61518.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V52]
 gi|126510798|gb|EAZ73392.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC
           8457]
 gi|126521700|gb|EAZ78923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           B33]
 gi|146314019|gb|ABQ18559.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           O395]
 gi|227015171|gb|ACP11380.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
 gi|229352514|gb|EEO17454.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229356425|gb|EEO21343.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229372092|gb|ACQ62514.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254845633|gb|EET24047.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
 gi|255736226|gb|EET91624.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|262023138|gb|EEY41843.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|262030819|gb|EEY49450.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
          Length = 422

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 147/409 (35%), Positives = 230/409 (56%), Gaps = 11/409 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGL  +++  + + G   PTPIQ + IP VLQ  DV   AQTGTGKTA+F LP++
Sbjct: 6   ITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65

Query: 61  TILEKGRARVRMPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               +   +       I      PTRELA QV D+ + Y K   L +  + GG   + Q 
Sbjct: 66  QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G D+LI TPGR+LDH +   L +  +E+LV+DEADRMLDMGF+P +Q +   +  
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSAT   +++ V+   +++P  ++V   +STAET+       Y    K+   L 
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETV---QQMVYPVDKKRKRELL 242

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L      +  ++F   ++    L   L+  G    +I+G+  Q +R K L +FK G +
Sbjct: 243 SYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L++ ++   
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQ 362

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           ++AIE+L+  ++  +WL G   S  P + + +  + +  R +     K+
Sbjct: 363 LEAIERLLNTRLPQEWLKGFEPS--PVVHEENSPRRSAGRSSEKRKLKA 409


>gi|291392610|ref|XP_002712705.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1
           [Oryctolagus cuniculus]
          Length = 455

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 154/463 (33%), Positives = 245/463 (52%), Gaps = 36/463 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++  +  A    G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 25  TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVHCAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K      ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++          SK        + 
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ---YYIFIPSKFKDTYLVYIL 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI KK+         +    E++  AQ                          + + +
Sbjct: 379 EHLIGKKLPVFPTQDDEVMMLTERVAEAQ--------------------------RFARM 412

Query: 421 PLKES-EKISKLQQDIQENDAD--SLGFRGNMPAFMLPKNRGK 460
            L+E  EK  + ++D+ +ND    ++G R  +    + K +G+
Sbjct: 413 ELREHGEKKKRAREDVGDNDDTEGAMGVRNKVAGGKMKKRKGR 455


>gi|195581763|ref|XP_002080703.1| GD10627 [Drosophila simulans]
 gi|194192712|gb|EDX06288.1| GD10627 [Drosophila simulans]
          Length = 527

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 118/441 (26%), Positives = 200/441 (45%), Gaps = 12/441 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +V  +   G    TPIQ K IP +L   D  G A+TG+GKT +F LP+L  
Sbjct: 9   FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILER 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PT ELA Q+++ F   G+   + V ++ GG     +++KL + 
Sbjct: 69  LSE---EPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQR 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++  PGR+ DH         +    ++ +    +  G       I        +  L
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLSGDFDESLAIIERCLPKTRQNL 185

Query: 183 FSATMTDELQKVSENFL---QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           F +    +  K S  F       +  + +  ++     +   +              +  
Sbjct: 186 FFSATMRDFMKESSIFPIASNCFEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKY 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++   N +IF N KK    L  +L+        +HG + Q+ R+  LS FK   I+ +
Sbjct: 246 REENENANVMIFTNTKKYCQLLSMTLKNMDIDNVCLHGFMRQKERVAALSRFKSNQIRTL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           +A+D+AARGLDIP V  V N  +P   + YIHR+GRT RAGR G + ++     D++ + 
Sbjct: 306 IATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLA 365

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           AIE+ I  K+     D       +E+I   Q N  R+ + +   +  FD R +NY  +  
Sbjct: 366 AIEEEINTKLTEHPID----QRMVERI-FMQVNVTRRESEMQLDNNDFDERAQNYRRKTW 420

Query: 419 HIPLKESEKISKLQQDIQEND 439
            +  K+ +++  L +  Q++ 
Sbjct: 421 IMQGKDPDQMEALYRKKQKDK 441


>gi|294783794|ref|ZP_06749118.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium sp.
           1_1_41FAA]
 gi|294480672|gb|EFG28449.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium sp.
           1_1_41FAA]
          Length = 529

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 133/368 (36%), Positives = 206/368 (55%), Gaps = 7/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F +LGL  KV+  +   GY  PTPIQ  TIP +L+   D+ G AQTGTGKTA+F LP++
Sbjct: 9   EFRELGLGEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E         + ++L PTRELA QVA+       +  + V  + GG   + Q K ++
Sbjct: 69  ENFETSD---HHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR++D   R  L +N+++  V+DEAD ML+MGFI  I+ I +     ++ 
Sbjct: 126 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFVLDEADEMLNMGFIEDIEKILTFTNDDKRM 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+ K+++  ++  + + V +   T +  E      +    +        + 
Sbjct: 186 LFFSATMPPEIMKIAKTHMKEYEVLAVKSRELTTDLTEQ---IYFEVNERDKFEALCRII 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  GIIFC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I ++V
Sbjct: 243 DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV N+ VP   E+Y+HRIGRTGRAG+ G A T +  ++ + +  I
Sbjct: 303 ATDVAARGIDINDLSHVINYAVPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 362

Query: 361 EKLIEKKV 368
           +K ++K++
Sbjct: 363 QKAVKKEI 370


>gi|227818223|ref|YP_002818232.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|227005726|gb|ACP15469.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
          Length = 481

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 138/419 (32%), Positives = 233/419 (55%), Gaps = 15/419 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++  LS +V  A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQVLVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++++S  ++  P  IE+     T + IEH     +    ++   L + + +
Sbjct: 182 LFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEH---TLFEVREEEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++  +    IHG + Q  R  ++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIE 358

Query: 362 KLIEKKV---------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
             I   +         + + G  +       K  I +   A  N  I +      ++KK
Sbjct: 359 AYIGFAIPKANAPSKEEVMKGKAAFEEKIQAKPTIKKDKSADINKGIMKLYFNGGKKKK 417


>gi|207725326|ref|YP_002255722.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
 gi|206590561|emb|CAQ37523.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
          Length = 633

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 148/419 (35%), Positives = 234/419 (55%), Gaps = 32/419 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL  ++V A+ +  Y  PTP+Q + IP  L   D+   +QTG+GKTA+F+LP +  
Sbjct: 64  FAALGLDERIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQR 123

Query: 63  L--------------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNL 101
           +                     + R     P  L+L PTRELA QV     +YG++   +
Sbjct: 124 ISEQPEPQRPRVDGAPQRVKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRRI 183

Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
             A ++GG+P+  Q   L R  D++I TPGR+LDH + G++ ++ +++LV DEADRMLDM
Sbjct: 184 VCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDM 243

Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
           GF   I+ I    P +RQ L+FSATM   +++++E  ++ P+RIE+         IE   
Sbjct: 244 GFADDIEAIVGATPESRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARVDQSNIEERL 303

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
             T     K    L   L    ++K  I+F   K++  +L   L + GF+  A+HG++ Q
Sbjct: 304 HFTDDMSHK--QQLLDHLLRDASLKQAIVFTATKRDADSLAERLTETGFAAGALHGDMHQ 361

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
            +R + L+  + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR
Sbjct: 362 GARNRTLTALRRGHLRILVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGR 421

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
            G A  LV   D      IE+ ++++++            +E ++  +    R+  P P
Sbjct: 422 SGIAINLVNHGDTFQWRRIERFVDRRIN---------ATVVEGLEPKRSPKPRREGPRP 471


>gi|218248985|ref|YP_002374356.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp.
           PCC 8801]
 gi|257062070|ref|YP_003139958.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8802]
 gi|218169463|gb|ACK68200.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8801]
 gi|256592236|gb|ACV03123.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8802]
          Length = 485

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 147/369 (39%), Positives = 215/369 (58%), Gaps = 5/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGLS      +   G+  PT IQ K IPL+L+ HD+ G +QTGTGKTA++ LP+L
Sbjct: 3   ISFQSLGLSETRANQLEAIGFTSPTEIQQKAIPLLLEGHDILGQSQTGTGKTAAYSLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LIL PTRELA QVA   + +     L +  + GG   E Q + LE
Sbjct: 63  EQVDVKNPNVQA---LILTPTRELAQQVALALKDFSTERRLYILTVYGGQSIERQIRSLE 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++D  +R KL    +   V+DEAD ML MGFI  ++ I    P TR T
Sbjct: 120 RGVQIVVGTPGRVIDLLDRKKLSFEGLRWAVLDEADEMLSMGFIDDVKKILKQTPDTRST 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM  E++++   FL++P  + V  P +    IE         +SK  A   Q + 
Sbjct: 180 ACFSATMPREIRELVNQFLKSPVTVAVEQPQAAPSKIEQHLYNVPRGWSKLKA--LQPIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  ++ IIF   K+    L   L++ G SV   HGN+ Q  R +++  F+EG I+L+V
Sbjct: 238 ELEAPESAIIFVRTKQTAAELTCKLQEAGQSVDEYHGNLSQSQRERLVYRFREGKIKLVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++ HV N+D+P+ AE YIHRIGRTGRAG+ G A +LV   D + I  I
Sbjct: 298 ATDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRMIKQI 357

Query: 361 EKLIEKKVD 369
           E+ + ++++
Sbjct: 358 ERKLRQQLE 366


>gi|196036086|ref|ZP_03103486.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|195991253|gb|EDX55221.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
          Length = 481

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 138/419 (32%), Positives = 233/419 (55%), Gaps = 15/419 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++  LS +V  A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFVRQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++++S  ++  P  IE+     T + IEH     +    ++   L + + +
Sbjct: 182 LFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEH---TLFEVREEEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++  +    IHG + Q  R  ++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIE 358

Query: 362 KLIEKKV---------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
             I   +         + + G  +       K  I +   A  N  I +      ++KK
Sbjct: 359 AYIGFAIPKANAPSKEEVMKGKAAFEEKIQAKPTIKKDKSADINKGIMKLYFNGGKKKK 417


>gi|83745783|ref|ZP_00942840.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
 gi|207743697|ref|YP_002260089.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
 gi|83727473|gb|EAP74594.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
 gi|206595096|emb|CAQ62023.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
          Length = 631

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 148/419 (35%), Positives = 234/419 (55%), Gaps = 32/419 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL  ++V A+ +  Y  PTP+Q + IP  L   D+   +QTG+GKTA+F+LP +  
Sbjct: 64  FAALGLDERIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQR 123

Query: 63  L--------------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNL 101
           +                     + R     P  L+L PTRELA QV     +YG++   +
Sbjct: 124 ISEQPEPQRPRVDGAPQRVKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRRI 183

Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
             A ++GG+P+  Q   L R  D++I TPGR+LDH + G++ ++ +++LV DEADRMLDM
Sbjct: 184 VCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDM 243

Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
           GF   I+ I    P +RQ L+FSATM   +++++E  ++ P+RIE+         IE   
Sbjct: 244 GFADDIEAIVGATPESRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARVDQSNIEERL 303

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
             T     K    L   L    ++K  I+F   K++  +L   L + GF+  A+HG++ Q
Sbjct: 304 HFTDDMSHK--QQLLDHLLRDASLKQAIVFTATKRDADSLAERLTETGFAAGALHGDMHQ 361

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
            +R + L+  + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR
Sbjct: 362 GARNRTLTALRRGHLRILVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGR 421

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
            G A  LV   D      IE+ ++++++            +E ++  +    R+  P P
Sbjct: 422 SGIAINLVNHGDTFQWRRIERFVDRRIN---------ATVVEGLEPKRSPKPRREGPRP 471


>gi|224010271|ref|XP_002294093.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220970110|gb|EED88448.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 471

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 130/378 (34%), Positives = 209/378 (55%), Gaps = 3/378 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  +   V+  V+  G+ KPTPIQ +  P+ L+  ++ GI+ TG+GKT +F+LP +
Sbjct: 69  MTFEEASMPEYVLSEVIKCGFDKPTPIQSQGWPMALKGKNMVGISATGSGKTLAFLLPAM 128

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +   +       P  L+L PTRELA Q+ +  +K+G +  +   ++ GG+P   Q + 
Sbjct: 129 IHINAQQYLKPGEGPIVLVLAPTRELAVQIKEECDKFGASSEIKNTVVYGGVPKSKQVRS 188

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G +++I TPGR++DH  +G   +  +  LV+DEADRMLDMGF P ++ I S +   R
Sbjct: 189 LREGVEIVIATPGRLIDHLEQGNTNLKRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDR 248

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L++SAT   E+Q ++ ++L +  ++ V +            +   +   K   LL+ L
Sbjct: 249 QVLMWSATWPKEVQNLARDYLSDFYQVTVGSLDLAGNKDVTQMIDVCSDQDKYRNLLRYL 308

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            ++  +    ++F   KK    L  SL   GF   A+HG+  Q  R  +L  FK     L
Sbjct: 309 RENLTSKDRVLVFVETKKGCDMLTRSLRMDGFQARAMHGDKSQEERDWVLREFKSCQATL 368

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT-LVAKEDIKHI 357
           +VA+D+AARGLD+ D+  V NFD PN  E YIHRIGRTGRAG+ G A +  V +++ +  
Sbjct: 369 LVATDVAARGLDVDDIKMVVNFDFPNDTETYIHRIGRTGRAGKKGFAVSFFVTEKNGRMA 428

Query: 358 DAIEKLIEKKVDWLNGDL 375
             I +++ +    +  +L
Sbjct: 429 RDIIEILNRTQQNVPPEL 446


>gi|332826518|gb|EGJ99347.1| hypothetical protein HMPREF9455_00380 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 371

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 144/367 (39%), Positives = 214/367 (58%), Gaps = 5/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   ++ A+ + GY  PTPIQ   IP+VL+  D+ G+AQTGTGKTA+F +P++
Sbjct: 1   MTFQELNIIEPILRALQEKGYTNPTPIQEDAIPVVLKNQDMLGLAQTGTGKTAAFSIPII 60

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L + +   R R  R LI+ PTRELA Q+ D   +Y     L   ++ GG+  +AQ  +
Sbjct: 61  QHLYQNKISGRKREIRALIITPTRELAIQINDCIREYTLYTGLRHCVIFGGVKQKAQTDE 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD  N+G + +N I   V+DEADRMLDMGFI  I+ +   +P  +
Sbjct: 121 LHKGIDILVATPGRLLDLMNQGFVSLNAITHFVLDEADRMLDMGFIHDIKRLLPKLPKDK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM   +  +S + L+NP R+EV   SS  + IE        Q  K   +    
Sbjct: 181 QTLFFSATMPPAIAALSRSILRNPVRVEVAPVSSVVDVIEQSVYFVEKQDKKDLLINLLK 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   ++ ++F   K     +   L K G    AIHGN  Q +R + L+NFK    ++
Sbjct: 241 KDKK---QSVLVFSRTKHGADKIARLLCKAGIGSEAIHGNKSQNARQRALANFKSHKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+  +  V N+D+P+  E Y+HRIGRTGRAG  G A T  A+++   + 
Sbjct: 298 LIATDIAARGIDVNQLELVINYDLPDVPETYVHRIGRTGRAGHSGTALTFCAEDERPMLK 357

Query: 359 AIEKLIE 365
            I+KL  
Sbjct: 358 DIQKLTG 364


>gi|170679910|ref|YP_001746099.1| ATP-dependent RNA helicase RhlB [Escherichia coli SMS-3-5]
 gi|226739537|sp|B1LLV3|RHLB_ECOSM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|170517628|gb|ACB15806.1| ATP-dependent RNA helicase RhlB [Escherichia coli SMS-3-5]
          Length = 421

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 138/413 (33%), Positives = 207/413 (50%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLCAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGAPRNRRRSG 421


>gi|254369546|ref|ZP_04985557.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. holarctica FSC022]
 gi|157122500|gb|EDO66635.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 569

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 139/371 (37%), Positives = 216/371 (58%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGL+  +V  V+  GY  PTPIQ   IP +L   DV G AQTGTGKTA+F LP++ 
Sbjct: 8   DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++    R R P+ L+L PTRELA QVA+ FE + KN        I  G  + +Q + L+
Sbjct: 68  NMDLAS-RDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ T GR++DH  +G L ++N+  LV+DEAD ML MGFI  ++ + S V    Q 
Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQCQR 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++  + E +L+NP +I+V   + TA T+   F+                 +
Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETE 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +   IIF   K + + +  +L+  G+ V AI+G++ Q  R  I+  F+     ++V
Sbjct: 247 ETDGV---IIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+  + HV N+D+PN  + Y+HRIGRTGRAGR G + +LV  ++++ +  +
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363

Query: 361 EKLIEKKVDWL 371
           E+     +  +
Sbjct: 364 ERFTGSPMQEV 374


>gi|156973271|ref|YP_001444178.1| ATP-dependent RNA helicase SrmB [Vibrio harveyi ATCC BAA-1116]
 gi|156524865|gb|ABU69951.1| hypothetical protein VIBHAR_00952 [Vibrio harveyi ATCC BAA-1116]
          Length = 407

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 128/371 (34%), Positives = 199/371 (53%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L L   ++ A+ + GY +PT IQ + IP  L   D+   A TGTGKTA+FVLP L 
Sbjct: 4   TFAELDLDQNLLEAIDEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    R   P  + IL PTRELA QVAD      KN  L +  + GG+ ++     L 
Sbjct: 64  YLQDFPRRKPGPARILILTPTRELAMQVADQARALAKNTKLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+ ++ +  +     IE L++DEADRMLDMGF P +  +++   + +QT
Sbjct: 124 TTQDIVVATPGRLREYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     ++  + + L  P  I+  +P    + I   +        K         
Sbjct: 184 LLFSATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADDAEHKLA---LLKH 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F   ++ +  L   LE        I G + Q  R   +S F+EGT+ ++
Sbjct: 241 IITEQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFREGTVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A ++V   D   +D 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR 360

Query: 360 IEKLIEKKVDW 370
           + + +++ +  
Sbjct: 361 VARYVKEDIKE 371


>gi|90414227|ref|ZP_01222207.1| ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90324674|gb|EAS41215.1| ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 437

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 136/428 (31%), Positives = 207/428 (48%), Gaps = 9/428 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL P V+  +   G+   TPIQ   +P+VL   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADLGLEPTVLQGLDAQGFHNCTPIQALALPVVLTGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +   PR +I+ PTRELA Q+ ++      +  L   L  GG  +E Q K
Sbjct: 70  HLLLNPASDERKTNQPRAIIMAPTRELAIQIYNDAAPLLASTGLKAGLAYGGEAYEKQQK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
               G D+LI T GRI+D + +  + + +I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VFAEGVDILIGTCGRIIDFYKQRVIDLASIQVVVLDEADRMFDLGFIKDIRFLFRRMPAP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +  L    + T   +     F       E        +T        +   +++   L Q
Sbjct: 190 KARLNMLFSATLSYRVKELAFEHMNS-PESVVVEPDQKTGHRIQEELFYPSNQEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L      V  ++G++ Q+ R++IL  F +G I 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEDIWGHLAADNHRVGLLNGDVPQKKRVRILEQFTQGEID 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HV+N+D+P+ AE+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHIPQVTHVYNYDLPDDAEDYVHRIGRTGRAGESGNSISFACEEYAINL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE  IE  +     +    L  L  PL      +    R+ N   Q       R  N 
Sbjct: 369 PAIETYIEHPIPLSKYNSEALLDELPAPLRLQRTPRQGGNRRPNGNRQGQGQSRPRNNNR 428

Query: 414 SSQKSHIP 421
              +S   
Sbjct: 429 RHPQSQKQ 436


>gi|326534222|dbj|BAJ89461.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 414

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 196/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 42  SFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G       + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 102 QLDYGLVE---CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS 158

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 159 GVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVG 218

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 219 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDL--YE 276

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 277 TLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V +ED + +  I+
Sbjct: 337 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTREDERMLFDIQ 396

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     ++ L  +++ L
Sbjct: 397 KFYNVVIEELPANVADL 413


>gi|313202811|ref|YP_004041468.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312442127|gb|ADQ78483.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 451

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 161/445 (36%), Positives = 248/445 (55%), Gaps = 23/445 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L   ++ A+   GY +PTPIQ  +IP+VL+ HD+ G AQTGTGKTA+F +P+L
Sbjct: 1   MTFDKLDLIEPILNALSHEGYTQPTPIQEISIPIVLKGHDLLGCAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L+  +   R PR +   I+ PTRELA Q+ ++F  YG+  NL   ++ GG+P  AQ  
Sbjct: 61  QLLQLNKGAERAPRKIKALIVTPTRELAIQIGESFAAYGRFMNLRHTVIFGGVPQGAQVG 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G D+LI TPGR+LD   +G + +N + I V+DEADRMLDMGFI  ++ +  ++P  
Sbjct: 121 ALKMGVDILIATPGRLLDLQTQGYVKLNELSIFVLDEADRMLDMGFIHDVKKLIKIIPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+L FSATM + ++ ++ + L NP+ + V   S+TAETI+       A   K   +   
Sbjct: 181 RQSLFFSATMPESIRVLAGSILTNPEEVAVTPVSTTAETIQQEMYFVDAVNKKDLLIHLL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                 ++K  ++F   K     +   L K      AIHGN  Q +R   L NFK+ T +
Sbjct: 241 ---QDKSIKTALVFTRTKHGADKVQRLLTKARIKAEAIHGNKSQNARQNALRNFKDRTTR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI D+  V N+++PN  E Y+HRIGRTGRAG  GKA +    E+ +++
Sbjct: 298 VLVATDIAARGIDIDDLNLVINYEIPNIPETYVHRIGRTGRAGLDGKAVSFCDAEEHEYL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             I+KLI  ++  +                  H    +N P+  KS    +  +N     
Sbjct: 358 RDIQKLISIQIPVIKD----------------HPFPAENMPVVGKSKSKSKPNQNIRQPN 401

Query: 418 SHIPLKESEKISKLQQDIQENDADS 442
            + P K +   + + +   ++ A+ 
Sbjct: 402 PNKP-KITHNRAPISKAATDSAAEP 425


>gi|295090645|emb|CBK76752.1| Superfamily II DNA and RNA helicases [Clostridium cf.
           saccharolyticum K10]
          Length = 553

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 135/382 (35%), Positives = 220/382 (57%), Gaps = 9/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L  K++ AV D G+   +PIQ K IPL L+  D+ G AQTGTGKTA+F +P+L  
Sbjct: 6   FEELNLDAKILRAVTDMGFEAASPIQAKAIPLELEGKDIIGQAQTGTGKTAAFGIPLLEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    +++     +L PTRELA QVA+      K  +    L I  G     Q + L+ 
Sbjct: 66  IDPKNKKLQAV---VLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSLKD 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+I TPGR++DH  R  +    +  +V+DEAD ML+MGF+  ++ I S +P  RQT+
Sbjct: 123 GVQVIIGTPGRVMDHMRRKTIKFGQVHTVVLDEADEMLNMGFLEDMETILSELPEERQTV 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM   + ++++ F ++P+ ++V     T   +   +     +   +          
Sbjct: 183 MFSATMPQAIAEIAKKFQKDPEIVKVVKKDLTVPKVTQYYYDVKPKNKLEVMCRLL---D 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  ++FCN KK V  L  +L+ +G+    +HG++ Q  R ++++ F++G   ++VA
Sbjct: 240 MYAPKLSVVFCNTKKQVDELVLALQGRGYFAEGLHGDLKQVQRDRVMNGFRKGRTDILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR GKAF+LV  +++  +  I+
Sbjct: 300 TDVAARGIDVDDVEAVFNYDIPQDEEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRDIQ 359

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  + K+  +   + S++   E
Sbjct: 360 RYCKTKI--VPQPIPSIDDVTE 379


>gi|283798617|ref|ZP_06347770.1| ATP-dependent RNA helicase [Clostridium sp. M62/1]
 gi|291073603|gb|EFE10967.1| ATP-dependent RNA helicase [Clostridium sp. M62/1]
 gi|295115719|emb|CBL36566.1| Superfamily II DNA and RNA helicases [butyrate-producing bacterium
           SM4/1]
          Length = 553

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 135/382 (35%), Positives = 220/382 (57%), Gaps = 9/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L  K++ AV D G+   +PIQ K IPL L+  D+ G AQTGTGKTA+F +P+L  
Sbjct: 6   FEELNLDAKILRAVTDMGFEAASPIQAKAIPLELEGKDIIGQAQTGTGKTAAFGIPLLEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    +++     +L PTRELA QVA+      K  +    L I  G     Q + L+ 
Sbjct: 66  IDPKNKKLQAV---VLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSLKD 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+I TPGR++DH  R  +    +  +V+DEAD ML+MGF+  ++ I S +P  RQT+
Sbjct: 123 GVQVIIGTPGRVMDHMRRKTIKFGQVHTVVLDEADEMLNMGFLEDMETILSELPEERQTV 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM   + ++++ F ++P+ ++V     T   +   +     +   +          
Sbjct: 183 MFSATMPQAIAEIAKKFQKDPEIVKVVKKDLTVPKVTQYYYDVKPKNKLEVMCRLL---D 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  ++FCN KK V  L  +L+ +G+    +HG++ Q  R ++++ F++G   ++VA
Sbjct: 240 MYAPKLSVVFCNTKKQVDELVLALQGRGYFAEGLHGDLKQVQRDRVMNGFRKGRTDILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR GKAF+LV  +++  +  I+
Sbjct: 300 TDVAARGIDVDDVEAVFNYDIPQDEEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRDIQ 359

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +  + K+  +   + S++   E
Sbjct: 360 RYCKTKI--VPQPIPSIDDVTE 379


>gi|325577716|ref|ZP_08147991.1| ATP-dependent RNA helicase RhlB [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160461|gb|EGC72587.1| ATP-dependent RNA helicase RhlB [Haemophilus parainfluenzae ATCC
           33392]
          Length = 419

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 137/409 (33%), Positives = 211/409 (51%), Gaps = 3/409 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P V  A+ D G+   TPIQ  ++P+ LQ  DV G AQTGTGKT +F+      
Sbjct: 11  FADLPLHPIVQKALQDKGFEYCTPIQALSLPITLQGKDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               +       PR LIL PTRELA Q+ ++ E   K   L  AL  GG  ++ Q K +E
Sbjct: 71  LLTHQPDFATSQPRALILAPTRELAVQINNDAELLAKTSGLRTALAYGGDGYDKQLKAIE 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+LI T GR++D+  +G + +++I+++V+DEADRM D+GFI  I+ +    P  ++ 
Sbjct: 131 AGVDILIGTTGRVIDYVKQGIIRLDDIQVVVLDEADRMFDLGFIRDIRYLLRKCPSPQER 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L    + T   +     F       E        +T        +   ++    L   L 
Sbjct: 191 LTMLFSATLSYKVRELAFEDMNS-PEYIEIEPEQKTGHRIKEELFYPSNEDKIPLLLTLM 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G + ++V
Sbjct: 250 EEEWPERCIVFANTKHKCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFADGELDILV 309

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL I DV HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ AI
Sbjct: 310 ATDVAARGLHISDVTHVFNFDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPAI 369

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           E+ I   +     D +SL   + K    +H+   +      + T + R+
Sbjct: 370 EEYIGHSIPVSQYDPNSLISDIPKPYRLKHHSTPQTRNTSTRKTNYRRK 418


>gi|324993358|gb|EGC25278.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK405]
 gi|327458716|gb|EGF05064.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1057]
          Length = 523

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 146/373 (39%), Positives = 224/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQA---LIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P  +++     T E ++  ++                  
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPNHVKIAAKELTTELVDQYYIRVKENEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+  GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKISGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|54302107|ref|YP_132100.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46915528|emb|CAG22300.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
          Length = 623

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 136/372 (36%), Positives = 217/372 (58%), Gaps = 6/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L L+  ++ A+   G+V PTPIQ  +IPL+L   D  G AQTGTGKTA+F LP+L 
Sbjct: 7   EFRQLDLADTLLSALDSMGFVSPTPIQAASIPLLLTGVDALGKAQTGTGKTAAFSLPVLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKLE 120
            ++  + +   P+ +++ PTRELA QVA   +  G+N      L I G      Q + L+
Sbjct: 67  KVDLSQHK---PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRALK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ D  +R +L ++ +   V+DEAD ML MGF+  +  I    P + Q 
Sbjct: 124 NGAHIVVGTPGRVKDLISRDRLHLDEVSTFVLDEADEMLKMGFVDDVTWIMEQAPASAQR 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++++ + FL+NP+RI+V   + T   +   F         +     ++L+
Sbjct: 184 VLFSATMPPIVKQIVDRFLRNPERIDVAGENRTVSQVSQQFWIVKGVEKDEAM--IRMLE 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++ +   I+F   +++   L   L  +G    A+HG+I Q  R + + + K G I ++V
Sbjct: 242 TEENIDASIVFVRTRQDTERLADWLSARGCKAAALHGDIPQSLRERTVDHIKRGVIDVLV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLDI  + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  I
Sbjct: 302 ATDVVARGLDIQRITHVFNYDIPFDVESYIHRIGRTGRAGRSGKAILLVRTNQIRMLRTI 361

Query: 361 EKLIEKKVDWLN 372
           E++ + +++ + 
Sbjct: 362 ERVTKSRMEEIQ 373


>gi|295097653|emb|CBK86743.1| ATP-dependent RNA helicase CsdA [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 631

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 133/378 (35%), Positives = 222/378 (58%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     +R P+ L+L PTRELA QVA+   ++ K+      + +  G  ++ Q + L 
Sbjct: 67  NIDP---DLRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++ +  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   + + Y     +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +       + L
Sbjct: 361 ERTMKLTIPEAELPNAEL 378


>gi|315499118|ref|YP_004087922.1| dead/deah box helicase domain protein [Asticcacaulis excentricus CB
           48]
 gi|315417130|gb|ADU13771.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB
           48]
          Length = 605

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 157/450 (34%), Positives = 247/450 (54%), Gaps = 7/450 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGLS  ++  +   GY  PTPIQ + IP++L +HD+ GIAQTGTGKTA+F LP+L 
Sbjct: 3   TFKDLGLSASLLSTLEKEGYHTPTPIQAQAIPILLNKHDLLGIAQTGTGKTAAFALPILH 62

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   +     R  R L+L PTRELA Q+AD+F+ Y K   L +A + GG+ +  Q K L
Sbjct: 63  HILSNRIIPAPRSCRVLVLSPTRELATQIADSFKAYSKGLGLQIATIFGGVKYGPQYKAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D+L+ TPGR++DH  +  + +  +E LV+DEAD+MLDMGFI  I+ + S +P  RQ
Sbjct: 123 QGGIDILVATPGRLIDHIEQKTIDLKAVEHLVLDEADQMLDMGFIKPIRQVASRLPAQRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSATM  E+  ++   L NPK++E+   ++TAE +    +    Q  +         
Sbjct: 183 NLFFSATMPKEIAGLANELLTNPKKVEITPEATTAERVTQQVIFIEQQRKRALLSEL--- 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + + +   +IF   K+    +   L+  G    AIHG+ +Q  R + L  FK G ++ +
Sbjct: 240 YADEKLARTLIFTRTKRGADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFKAGRVRAL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V HV N+++P  AE Y+HRIGRT RAG+ G + TLVA ++ K +  
Sbjct: 300 VATDIAARGIDVDNVTHVINYELPFVAEAYVHRIGRTARAGKEGHSITLVADDERKLLKD 359

Query: 360 IEKLIEKKVD-WLNGDLSSLNPPLEKIDIA-QHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE++  +++  W      +L    E I  + Q    +  + + +K+            ++
Sbjct: 360 IERITRQRIPSWDRRKDQALKLLDEAILASGQTEKPKTPDRVVEKTARHLDPDAERVHKR 419

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRG 447
           S       E+    +         + G + 
Sbjct: 420 SRNRPNRDERRGNGRDGDNSRGERTFGKKD 449


>gi|209886522|ref|YP_002290379.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
           carboxidovorans OM5]
 gi|209874718|gb|ACI94514.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
           carboxidovorans OM5]
          Length = 512

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 167/431 (38%), Positives = 233/431 (54%), Gaps = 10/431 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL+  +  A+ +  YV PTPIQ +TIP+ +   DV GIAQTGTGKTASF LP+L 
Sbjct: 3   SFQDFGLAETITRALSEENYVTPTPIQAQTIPIAITGRDVIGIAQTGTGKTASFALPILH 62

Query: 62  ILEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L + R R +     +L   PTREL+ Q+ D+F  YG++  L+  L IGG+P   Q + L
Sbjct: 63  RLLENRVRPQPKTCRVLVLSPTRELSGQILDSFTAYGRHLRLSATLAIGGVPMGRQVRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G +VL+ TPGR+LD      L +  +E LV+DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 123 MGGVEVLVATPGRLLDLVQGNALKLGQVEFLVLDEADRMLDMGFIHDIRKIVAKLPHRRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM  ++  ++E+ L+ P R+ V   SST E I           S         L
Sbjct: 183 TLFFSATMPKDIADLAEHMLREPARVAVTPVSSTVERI---AQRIIQLDSSAKPATLSEL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              + +   ++F   K     +  SL K G    AIHGN  Q  R ++L+ F+ G I+ +
Sbjct: 240 LKSEPVNRALVFTRTKHGADKVVRSLVKAGIPAEAIHGNKSQNHRERVLAAFRNGDIRTL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HV NFD+PN  E Y+HRIGRT RAG  G A +LVA E+  ++  
Sbjct: 300 VATDIAARGIDVDGITHVVNFDLPNVPETYVHRIGRTARAGAEGTAISLVAGEENAYLRD 359

Query: 360 IEKLIEKKVDWLN----GDLSSLNPPLEKIDIAQHNH-ARKNNPIPQKSTGFDRRKKNYS 414
           IE+LI   +   +    G   S      +    +H H A +N   P+      R   +  
Sbjct: 360 IERLIRITLPREDRRTGGQSESAGQAAPRGRDNRHRHGAPRNGGAPRNGASHGRPGGSRQ 419

Query: 415 SQKSHIPLKES 425
                 P K +
Sbjct: 420 DHNQDRPHKSA 430


>gi|123440819|ref|YP_001004810.1| ATP-dependent RNA helicase DeaD [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087780|emb|CAL10566.1| cold-shock dead-box protein A [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 657

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 136/378 (35%), Positives = 225/378 (59%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS  ++ A+ D GY KP+PIQ++ IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 8   SFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLH 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     ++ P+ L+L PTRELA QVA+    + K+ N    + +  G  ++ Q + L 
Sbjct: 68  NIDPS---LKAPQVLVLAPTRELAIQVAEALSSFSKHMNGVNVVALYGGQRYDVQLRALR 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + +P   QT
Sbjct: 125 QGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPAEHQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +                   
Sbjct: 185 ALFSATMPEAIRRITRRFMKEPQEVRIQSSMTTRPDISQSYWVVDGVRKNDA---LVRFL 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q +R + L   K G + +++
Sbjct: 242 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQAAREQTLERLKNGRLDILI 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V + + + +  I
Sbjct: 302 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVDRRERRLLQNI 361

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 362 ERTMKMTIPPVQLPNAEL 379


>gi|118480482|ref|YP_897633.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|196045537|ref|ZP_03112768.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|225867435|ref|YP_002752813.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|229187683|ref|ZP_04314819.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BGSC 6E1]
 gi|118419707|gb|ABK88126.1| ATP-dependent RNA helicase DbpA [Bacillus thuringiensis str. Al
           Hakam]
 gi|196023744|gb|EDX62420.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|225790635|gb|ACO30852.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|228595751|gb|EEK53435.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BGSC 6E1]
          Length = 481

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 138/419 (32%), Positives = 232/419 (55%), Gaps = 15/419 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++  LS +V  A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++++S  ++  P  IE+     T + IEH     +    ++   L + + +
Sbjct: 182 LFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEH---TLFEVREEEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L +  +    IHG + Q  R  ++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMEDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIE 358

Query: 362 KLIEKKV---------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
             I   +         + + G  +       K  I +   A  N  I +      ++KK
Sbjct: 359 AYIGFAIPKANAPSKEEVMKGKAAFEEKIQAKPTIKKDKSADINKGIMKLYFNGGKKKK 417


>gi|332160085|ref|YP_004296662.1| ATP-dependent RNA helicase DeaD [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|33332423|gb|AAQ11420.1| DeaD box RNA helicase [Yersinia enterocolitica]
 gi|318607355|emb|CBY28853.1| cold-shock DEAD-box protein A [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664315|gb|ADZ40959.1| ATP-dependent RNA helicase DeaD [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862020|emb|CBX72187.1| cold-shock DEAD box protein A [Yersinia enterocolitica W22703]
          Length = 657

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 136/378 (35%), Positives = 225/378 (59%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS  ++ A+ D GY KP+PIQ++ IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 8   SFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLH 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     ++ P+ L+L PTRELA QVA+    + K+ N    + +  G  ++ Q + L 
Sbjct: 68  NIDPS---LKAPQVLVLAPTRELAIQVAEALSSFSKHMNGVNVVALYGGQRYDVQLRALR 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + +P   QT
Sbjct: 125 QGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPAEHQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +                   
Sbjct: 185 ALFSATMPEAIRRITRRFMKEPQEVRIQSSMTTRPDISQSYWVVDGVRKNDA---LVRFL 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q +R + L   K G + +++
Sbjct: 242 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQAAREQTLERLKNGRLDILI 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V + + + +  I
Sbjct: 302 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVDRRERRLLQNI 361

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 362 ERTMKMTIPPVQLPNAEL 379


>gi|332366034|gb|EGJ43790.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1059]
          Length = 523

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 146/373 (39%), Positives = 226/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQA---LIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++                  
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|327461635|gb|EGF07966.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1]
          Length = 523

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 146/373 (39%), Positives = 226/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQA---LIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++                  
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|325697116|gb|EGD39003.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK160]
 gi|327473355|gb|EGF18775.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK408]
 gi|332362751|gb|EGJ40547.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK49]
          Length = 523

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 146/373 (39%), Positives = 226/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQA---LIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++                  
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|325694070|gb|EGD35988.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK150]
          Length = 523

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 146/373 (39%), Positives = 226/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQA---LIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++                  
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|324995328|gb|EGC27240.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK678]
          Length = 523

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 146/373 (39%), Positives = 226/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQA---LIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++                  
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|324990619|gb|EGC22555.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK353]
 gi|325688268|gb|EGD30287.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK72]
          Length = 523

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 146/373 (39%), Positives = 226/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQA---LIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++                  
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|323352691|ref|ZP_08087661.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66]
 gi|322121727|gb|EFX93473.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66]
          Length = 523

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 146/373 (39%), Positives = 226/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQA---LIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++                  
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|159030016|emb|CAO90397.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 479

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 149/403 (36%), Positives = 235/403 (58%), Gaps = 13/403 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS   +  +   G+  PT IQ K IPL+L+ HD+ G++QTGTGKTA++ LP+L  
Sbjct: 5   FNNLGLSDSRLQHLETLGFTTPTEIQTKAIPLLLEGHDMVGMSQTGTGKTAAYSLPLLER 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     V+    LIL PTRELA QVA   + +  +  L +  + GG   E Q + LE+G
Sbjct: 65  MDTKNPNVQA---LILTPTRELAQQVASAIKDFSDDRRLFILTVCGGQSMERQIRSLEKG 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++D  +R KL + ++  +V+DEAD ML MGFI  ++ I    P TRQT  
Sbjct: 122 VQIVVGTPGRVIDLLDRKKLHLESLNWVVLDEADEMLSMGFIDDVKKILQASPSTRQTAC 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++ +  NFL++P  + V+ P +    IE         ++K      Q L   
Sbjct: 182 FSATMPREIRDLIANFLKSPISVTVSQPQAAPAKIEQKIYMIPRGWTKLKV--LQPLLEI 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           + +++ IIF   K+    L   L++ G +V   HGN+ Q  R +++  F+EG I+L+VA+
Sbjct: 240 EPLESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+ ++ HV N+D+P+ AE YIHRIGRTGRAG+ G A +LV   D + +  IE+
Sbjct: 300 DIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQIEQ 359

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            + ++++         +P   + ++     A+  N + +  +G
Sbjct: 360 RLRQRLES--------SPIPSRTEVEAKRLAKLQNQLKEALSG 394


>gi|3288677|dbj|BAA31233.1| rhlE [Vibrio alginolyticus]
          Length = 411

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 156/418 (37%), Positives = 242/418 (57%), Gaps = 11/418 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV   GY KPT IQ K IP+VL+  ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSASITDAVKALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G   R +  R +IL PTRELA QV  + E YGKN  L    + GG+ +  Q + L
Sbjct: 61  EKLSQGETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVEYAPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR++D + +  +  + +E+LV+DEAD+MLDMGFI  I  I   +P   Q
Sbjct: 121 IEGVDIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIIDCMPEDVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT+++ ++ +++N + +P+ I   T +  + +  +             + L   +
Sbjct: 181 SLLFSATLSNPVRDLAKNAIVDPEEI---TIAKHSASKSNIKQWITTVDKDMKSSLLSHM 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++     +IF   K     L   LEK+G    A H   +QR R +++  FK G IQ +
Sbjct: 238 LNENDWSQVLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI ++  V N+D+P  A+ Y+HRIGRTGRAG  G+A +LV+K+D K++  
Sbjct: 298 VATGVAARGIDIDNLPVVINYDLPFPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCM 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE  +   ++ +  +  +   P + + I+  N+  KN   PQ     +R ++  S Q+
Sbjct: 358 IESRLGHLLERVEIEGFA---PRKPVPISILNYVPKNKRKPQD----NRPRRENSEQR 408


>gi|47568574|ref|ZP_00239273.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|47554816|gb|EAL13168.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
          Length = 481

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 131/372 (35%), Positives = 219/372 (58%), Gaps = 6/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++  LS +V  A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++++S  ++  P  IE+     T + IEH     +    ++   L + + +
Sbjct: 182 LFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEH---TLFEVREEEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L +  +    IHG + Q  R  ++++F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMNDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEERFLEEIE 358

Query: 362 KLIEKKVDWLNG 373
             I   +   N 
Sbjct: 359 AYIGFAIPKANA 370


>gi|281211648|gb|EFA85810.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 1269

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 122/376 (32%), Positives = 186/376 (49%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DL L   ++  + + GYVKP+PIQ K IP+ L   D+   A+ GTGKTASF++P L 
Sbjct: 43  EFDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALTGKDIMARAKNGTGKTASFLIPALE 102

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             +         + LIL PTRELA Q +   ++ GK  N+ V    GG   +    +L  
Sbjct: 103 KTDPT---KDYIQVLILVPTRELALQTSQVCKELGKYMNVKVMASTGGTSLKDDIMRLYE 159

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD   +    +NN   +++DEAD++L   F P I+ +   +P  RQ L
Sbjct: 160 TVHILVATPGRVLDLAQKSVANLNNTHTMIMDEADKLLSPEFQPLIEQLIHFLPAQRQIL 219

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F +   +           T++           ++       L S
Sbjct: 220 LFSATFPVTVKA----FKEAYLQKAYEINLMEELTLKGVTQYYAFVEERQKIHCLNTLFS 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   +   G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 276 KLQINQSIIFCNSVNRVELLAKKITDLGYSCFYIHAKMLQAHRNRVFHDFRNGHCRNLVS 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI DV  V NFD P  +E Y+HRIGR+GR G  G A  L+  ED   +  IE
Sbjct: 336 SDLFTRGIDIQDVNVVINFDFPKHSETYLHRIGRSGRFGHLGLAINLITYEDRFSLHKIE 395

Query: 362 KLIEKKVDWLNGDLSS 377
           + +  ++  +   +  
Sbjct: 396 QELGTEIKPIPPVIDK 411


>gi|237739222|ref|ZP_04569703.1| ATP-dependent RNA helicase [Fusobacterium sp. 2_1_31]
 gi|229422830|gb|EEO37877.1| ATP-dependent RNA helicase [Fusobacterium sp. 2_1_31]
          Length = 529

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 133/368 (36%), Positives = 206/368 (55%), Gaps = 7/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F +LGL  KV+  +   GY  PTPIQ  TIP +L+   D+ G AQTGTGKTA+F LP++
Sbjct: 9   EFRELGLGEKVLKVLSKKGYESPTPIQKLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E         + ++L PTRELA QVA+       +  + V  + GG   + Q K ++
Sbjct: 69  ENFETSD---HHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR++D   R  L +N+++  V+DEAD ML+MGFI  I+ I +     ++ 
Sbjct: 126 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFVLDEADEMLNMGFIEDIEKILTFTNDDKRM 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+ K+++  ++  + + V +   T +  E      +    +        + 
Sbjct: 186 LFFSATMPPEIMKIAKTHMKEYEVLAVKSRELTTDLTEQ---IYFEVNERDKFEALCRII 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  GIIFC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I ++V
Sbjct: 243 DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV N+ VP   E+Y+HRIGRTGRAG+ G A T +  ++ + +  I
Sbjct: 303 ATDVAARGIDINDLSHVINYAVPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 362

Query: 361 EKLIEKKV 368
           +K ++K++
Sbjct: 363 QKAVKKEI 370


>gi|145295298|ref|YP_001138119.1| hypothetical protein cgR_1238 [Corynebacterium glutamicum R]
 gi|140845218|dbj|BAF54217.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 729

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 144/371 (38%), Positives = 217/371 (58%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  +V+ AV   GY  P+PIQ +TIP++++  DV G+AQTGTGKTA+F LP+L+ 
Sbjct: 104 FDALGLPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTGTGKTAAFALPILSR 163

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++K    VR P+ L+L PTRELA QVAD+F+ +  +      L I  G  +  Q   L R
Sbjct: 164 IDKS---VRSPQALVLAPTRELALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRR 220

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  +G L ++ +  LV+DEAD ML+MGF   ++ I    P  +Q  
Sbjct: 221 GAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVA 280

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++S+ +L NP  I V + + T   I   F+       +        +  
Sbjct: 281 LFSATMPNGIRRLSKQYLNNPAEITVKSETRTNTNITQRFLNVAH---RNKMDALTRILE 337

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K     +   L  +GFS  AI+G+I Q  R + +   K+G + ++VA
Sbjct: 338 VTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 397

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV NFD+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 398 TDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 457

Query: 362 KLIEKKVDWLN 372
           +     +  + 
Sbjct: 458 RATNAPLHEME 468


>gi|16125088|ref|NP_419652.1| DEAD-box ATP dependent DNA helicase [Caulobacter crescentus CB15]
 gi|221233815|ref|YP_002516251.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
 gi|13422088|gb|AAK22820.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter
           crescentus CB15]
 gi|220962987|gb|ACL94343.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
          Length = 476

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 145/370 (39%), Positives = 218/370 (58%), Gaps = 5/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLGL+  ++ A+ + GY +PTPIQ + IP+VLQ  D+ GIAQTGTGKTA+F LP+L 
Sbjct: 3   QFSDLGLAKPLLKALAEKGYKEPTPIQAQAIPVVLQGKDLLGIAQTGTGKTAAFALPILQ 62

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L + R        R L+L PTRELA Q+A+NF+ Y  +  L+V  + GG+ +  Q K L
Sbjct: 63  RLAEDRKPAPRRGCRCLVLSPTRELATQIAENFKAYAVHMGLSVHTIYGGVKYGPQMKAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++DH      +++  EI V+DEAD+MLD+GF+  I+ I + +   RQ
Sbjct: 123 AGGIDVLVATPGRLMDHMAEKSAIVSGTEIFVLDEADQMLDLGFVVPIRKIAAQLTKNRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSATM  E+ K++   L NP ++ V   ++T E I+   +   AQ  +        L
Sbjct: 183 NLFFSATMPSEIGKLAGELLNNPVQVSVAPQATTVERIDQRVLFIEAQRKRPL---LAEL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +  +    I+F   K+    +   L   G    +IHG+  Q  R + L+ FK G ++ +
Sbjct: 240 FADTSFSRTIVFTRTKRGADRVAKYLNAAGIEAASIHGDKTQGQRERALAAFKAGEMRAL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV HV N+++PN  E Y+HRIGRT R G+ G A +  A ++   +  
Sbjct: 300 VATDIAARGIDVNDVSHVINYELPNVPEAYVHRIGRTARKGKDGIAISFCADDERNLLKD 359

Query: 360 IEKLIEKKVD 369
           I+K   + + 
Sbjct: 360 IQKATRQTIP 369


>gi|88798356|ref|ZP_01113941.1| ATP-dependent RNA helicase, DEAD box family protein [Reinekea sp.
           MED297]
 gi|88778796|gb|EAR09986.1| ATP-dependent RNA helicase, DEAD box family protein [Reinekea sp.
           MED297]
          Length = 433

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 145/374 (38%), Positives = 220/374 (58%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  ++ AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP++
Sbjct: 1   MQFSELALADPILKAVTEQGYTTPTPIQAQGIPAVLSGRDLLAAAQTGTGKTAGFTLPII 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                E    +    R L+L PTRELAAQV DN   Y K  ++   ++ GG+    Q +K
Sbjct: 61  QHLITENRPVKANRCRVLVLTPTRELAAQVEDNVTAYAKYTDVRSEVVFGGVKINPQMQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+LD  ++  +   ++E+LV+DEADRMLDMGFI  I+ I  L+P  R
Sbjct: 121 LRRGVDILVATPGRLLDLHSQNAIDFRDLEVLVLDEADRMLDMGFIHDIRRIMRLLPTQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT +DE++ +++  ++NP  + V   ++TAE +    +           +    
Sbjct: 181 QNLMFSATFSDEIRALAKTIVENPVEVSVTPKNTTAERVRQQVIPVDKAKKTALLIDLLK 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            ++       ++F   K     +   L K      AIHGN  Q +R + LS FK   I++
Sbjct: 241 KETW---HQVLVFSRTKHGANRIAEKLNKAKIPAAAIHGNKSQGARTRALSEFKSNDIRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + HV NFD+PN AE+Y+HRIGRTGRAG  G A +  ++++   + 
Sbjct: 298 LVATDIAARGIDIDQLPHVINFDLPNVAEDYVHRIGRTGRAGSDGDAISFASRDEADLLA 357

Query: 359 AIEKLIEKKVDWLN 372
           A++  I + ++ ++
Sbjct: 358 AVQNFIGQVIERVD 371


>gi|315179704|gb|ADT86618.1| hypothetical protein vfu_A01441 [Vibrio furnissii NCTC 11218]
          Length = 536

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 175/464 (37%), Positives = 257/464 (55%), Gaps = 11/464 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ + IP VLQ  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILQAIKEKGYETPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G   R    R LIL PTRELAAQV +    Y ++  L+ A++ GG+    Q  +L
Sbjct: 61  ERLTGGPRVRANQVRALILTPTRELAAQVQECVFTYSRHLPLSSAVVFGGVKINPQMLRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +N+  +  + +E+LV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILELLPKNRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ +++  + +P  I V+  +STA+T+E C         KK A +   L
Sbjct: 181 NLLFSATFSDEIRALAKGLVNDPVEISVSPANSTAKTVEQCVYPADV---KKKAPMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  ++F   K+    L   L ++G    AIHGN  Q +R   L+ FK G ++++
Sbjct: 238 IKDGNWQQVLVFTRTKRGANKLAAFLNEEGIKAAAIHGNKSQGARTTALAEFKSGELRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++PN AE+Y+HRIGRTGRAG  G+A +LV   +   +  
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPNIAEDYVHRIGRTGRAGEAGRAISLVCAVEAPDLFG 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           IE+LI++ +  +  +L    P    P  K+D       +   P      G    +   S+
Sbjct: 358 IERLIQQVLPRV--ELDGFKPTNAVPESKLDTRPIKPKKPKKPKKPAVQGERHAQGEKSA 415

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRG 459
            +   P + +   SK  +  +     +     + P     K R 
Sbjct: 416 SQGRKPNQNAGGKSKPSRQGEARQGRAPAK-NDQPEGATSKPRS 458


>gi|15230730|ref|NP_187299.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|75313790|sp|Q9SQV1|RH40_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 40
 gi|6437557|gb|AAF08584.1|AC011623_17 putative RNA helicase [Arabidopsis thaliana]
 gi|332640879|gb|AEE74400.1| DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana]
          Length = 1088

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 144/410 (35%), Positives = 218/410 (53%), Gaps = 11/410 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F   GL P+++  +L AG+  PTPIQ +T P+ LQ  D+  IA+TG+GKT  +++P  
Sbjct: 435 ITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAF 494

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +          P  LIL PTRELA Q+ D   ++G++  ++   L GG P   Q K+L
Sbjct: 495 ILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKEL 554

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGAD+++ TPGR+ D      +    + +LV+DEADRMLDMGF P I+ I + +P  RQ
Sbjct: 555 ERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQ 614

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+++AT   E++K++ + L NP ++ +      A               +K   L+Q+L
Sbjct: 615 TLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQIL 674

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +SQ+     II     K + +       + F    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 675 RSQERGSKVII-FCSTKRLCDHLARSVGRHFGAVVIHGDKTQGERDWVLNQFRSGKSCVL 733

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G AFT   ++D K+   
Sbjct: 734 IATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPD 793

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           + K++E       G    + P +   DIA            Q   G   R
Sbjct: 794 LIKVLE-------GANQQVPPQVR--DIAMRGGGGGGPGYSQDRRGMVNR 834


>gi|30265472|ref|NP_847849.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47531039|ref|YP_022388.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188291|ref|YP_031544.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|65317435|ref|ZP_00390394.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|165872531|ref|ZP_02217164.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167636244|ref|ZP_02394547.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|167641411|ref|ZP_02399661.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170689199|ref|ZP_02880396.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|170708677|ref|ZP_02899116.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|177651890|ref|ZP_02934473.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190568924|ref|ZP_03021826.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|218906634|ref|YP_002454468.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|228930460|ref|ZP_04093460.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228949176|ref|ZP_04111444.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229124957|ref|ZP_04254131.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 95/8201]
 gi|229600530|ref|YP_002869663.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254687105|ref|ZP_05150963.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254724112|ref|ZP_05185897.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. A1055]
 gi|254733618|ref|ZP_05191335.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254742162|ref|ZP_05199849.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Kruger B]
 gi|254755928|ref|ZP_05207960.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Vollum]
 gi|254761640|ref|ZP_05213660.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Australia 94]
 gi|30260150|gb|AAP29335.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47506187|gb|AAT34863.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49182218|gb|AAT57594.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|164711754|gb|EDR17298.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167510586|gb|EDR85982.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|167528359|gb|EDR91130.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170126459|gb|EDS95347.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|170666842|gb|EDT17608.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|172082594|gb|EDT67658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190559991|gb|EDV13974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|218536757|gb|ACK89155.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|228658458|gb|EEL14124.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 95/8201]
 gi|228810459|gb|EEM56812.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228829179|gb|EEM74816.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229264938|gb|ACQ46575.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
          Length = 481

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 138/419 (32%), Positives = 233/419 (55%), Gaps = 15/419 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++  LS +V  A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++++S  ++  P  IE+     T + IEH     +    ++   L + + +
Sbjct: 182 LFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEH---TLFEVREEEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++  +    IHG + Q  R  ++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIE 358

Query: 362 KLIEKKV---------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
             I   +         + + G  +       K  I +   A  N  I +      ++KK
Sbjct: 359 AYIGFAIPKANAPSKEEVMKGKAAFEEKIQAKPTIKKDKSADINKGIMKLYFNGGKKKK 417


>gi|323448840|gb|EGB04734.1| hypothetical protein AURANDRAFT_70371 [Aureococcus anophagefferens]
          Length = 383

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 182/377 (48%), Gaps = 19/377 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+ +P+ IQ + I  ++   DV   +Q+GTGKTA F + ML 
Sbjct: 25  SFEGMALREDLLRGIYAYGFERPSAIQQRAITPIVAGRDVIAQSQSGTGKTAVFCIAMLQ 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +LE      +M     + PTRELA Q        G   N+     IGG       ++L+ 
Sbjct: 85  VLESATNETQMLT---ISPTRELAEQTQKVCLALGDYMNVQCHACIGGKSIGEDIRRLDY 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L   N+++LVIDEAD ML+ GF   I +I   +P + Q +
Sbjct: 142 GVQIVSGTPGRVFDMIKRRNLRTRNLKMLVIDEADEMLNRGFKEQIYDIYRYLPPSTQVV 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+  ++  F+  P R+ V     T E I+  FVA   +  K   L       
Sbjct: 202 LISATMPQEVLDMTRKFMNEPVRVLVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  +   + ++                         G  ++++A
Sbjct: 260 TLTITQAVIFCNTKRKVSAMHGDMPQRERDAIMAEFR--------------GGASRVLIA 305

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+  RGLD+  V  V  +D+PN  E YIHRIGR+GR GR G A   V  +D++ +  IE
Sbjct: 306 TDIWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDVRILRDIE 365

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 366 QYYSTQIDEMPMNVADL 382


>gi|289208228|ref|YP_003460294.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix]
 gi|288943859|gb|ADC71558.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix]
          Length = 627

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 133/370 (35%), Positives = 214/370 (57%), Gaps = 6/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGLS  +  A+L  G+  PTP+Q   IP +L   DV G AQTGTGKT +F LP++ 
Sbjct: 6   SFAELGLSESLARALLQLGFTTPTPVQAACIPALLAGDDVLGEAQTGTGKTGAFGLPLID 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++  + RV+    LIL PTRELA QVA   E +  + +    L +  G P   Q + L 
Sbjct: 66  SIDPAQRRVQ---ALILAPTRELAGQVATALEGFAASIDGLEILPVYGGQPMGVQIRALR 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGR++DH  RG L ++ + ++V+DEAD ML MGF+  I+ I    P  RQT
Sbjct: 123 DGAQVVVGTPGRVVDHIKRGTLTLDALRMVVLDEADEMLRMGFVEEIEWILEQTPAERQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   +++++   ++ P+ I +   +     I+  +     ++  +     ++++
Sbjct: 183 TLFSATMPAPIRRIAHRHMREPQEIRIGAGNEAGTDIDQSYCLVDQRHKTEALG--RMIE 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  +   I+F   K     +  +L  QG     ++G+++Q  R +++++ ++G + ++V
Sbjct: 241 VEAGLDAAIVFARTKAATAEIAEALNAQGVQSSPLNGDMEQGERERVVADLRDGRLDVIV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+P + HVFN+D P  AE Y+HRIGRTGRAGR G+A   +     + +  I
Sbjct: 301 ATDVAARGIDVPRITHVFNYDAPGDAEVYVHRIGRTGRAGRKGRAILFLEPRKRRMLRDI 360

Query: 361 EKLIEKKVDW 370
           E+L  K V  
Sbjct: 361 ERLTGKPVRE 370


>gi|192362464|ref|YP_001982184.1| Superfamily II DNA and RNA helicase [Cellvibrio japonicus Ueda107]
 gi|190688629|gb|ACE86307.1| Superfamily II DNA and RNA helicase [Cellvibrio japonicus Ueda107]
          Length = 474

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 164/464 (35%), Positives = 246/464 (53%), Gaps = 19/464 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGL   ++ A+ D GY  PTPIQ + IP V+   D+   AQTGTGKTA F LP+ 
Sbjct: 1   MSFESLGLRADILRAIADEGYSAPTPIQQQAIPAVINGGDILAAAQTGTGKTAGFTLPLL 60

Query: 60  ----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                    K     R  R LIL PTRELAAQV D+   YGK   L  A++ GG+    Q
Sbjct: 61  EKLSQRDPGKTPQGRRPVRALILTPTRELAAQVHDSVRTYGKYLRLRSAVVFGGVSINPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G D+L+ TPGR+LD  N+  + + ++EILV+DEADRMLDMGFI  I+ + +L+P
Sbjct: 121 MMTLRGGVDILVATPGRLLDLVNQNAVYLQDVEILVLDEADRMLDMGFIHDIKKVLALLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT +D+++ +++  L  P  IEV   ++ +E +    +       ++    
Sbjct: 181 KQRQNLLFSATFSDDIKALADKLLNQPTLIEVARRNTASERVSQRVLPVDRHRKRELLSH 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                S    +  ++F   K     L   L+  G S  AIHGN  Q +R K L +FK G 
Sbjct: 241 L---ISGGNWQQVLVFTRTKHGANKLTEQLQDDGISAAAIHGNKSQGARTKALEDFKTGR 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ ++A+D+AARG+DI  + +V N+++PN  E+Y+HRIGRTGRA   G+A +LV  ++  
Sbjct: 298 IRALIATDIAARGIDIDQLPYVVNYELPNVPEDYVHRIGRTGRAQAEGEAVSLVCVDEHS 357

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDI---------AQHNHARKNNPIPQKST 404
            +  IEKLI++++  + ++G     +   E I +         A  N  ++N   P K T
Sbjct: 358 FLRDIEKLIKREIPREMISGFEPDPSIKAEPIVLGRRMTIGVGAGKNGKQQNRGNPNKPT 417

Query: 405 GFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
                        S+    +++  +  Q+  Q+  +   G   +
Sbjct: 418 KPQLALGTKPKNGSNKQGNKAKSGNSGQKPAQQARSSQPGKPNH 461


>gi|149907510|ref|ZP_01896257.1| Helicase [Moritella sp. PE36]
 gi|149809180|gb|EDM69109.1| Helicase [Moritella sp. PE36]
          Length = 615

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 148/373 (39%), Positives = 224/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL L   ++  + D GY  PTPIQ + IPL+    DV G+AQTGTGKTA+F LP+L
Sbjct: 8   VQFTDLNLPEPILQVLNDLGYEAPTPIQAECIPLLQNGGDVLGMAQTGTGKTAAFALPLL 67

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + ++    +   P+ L+L PTRELA QVA+ F+ Y ++      L I  G  +  Q K L
Sbjct: 68  SNIDTALTK---PQILVLAPTRELAIQVAEAFQTYSRHMRGFHVLPIYGGQSYPIQLKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +R   V++ TPGR++DH NRG L ++ I+ LV+DEAD ML MGFI  +++I S  P  RQ
Sbjct: 125 KRNPQVIVGTPGRVIDHINRGTLDLSGIKALVLDEADEMLRMGFIDDVESILSKTPAERQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM +E++++++ F+ NP  +++   +ST E IE   +      +K   L + L 
Sbjct: 185 MALFSATMPEEIRRITKRFMTNPTSVKIANKTSTVENIEQKCLIIGGLQAKLDGLTRILE 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIF   K   V L   LE +G+S  A++G+++Q  R + +S  K G + ++
Sbjct: 245 TEDYDG--VIIFARTKTMTVELAEKLEARGYSAAALNGDLNQAMRERTVSRLKSGQLDIV 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+P +  V N+D+P   E+Y+HRIGRTGRAGR G A    A  + + + A
Sbjct: 303 IATDVAARGLDVPRIDLVINYDIPTDTESYVHRIGRTGRAGRKGTAILFAAPRERRLLKA 362

Query: 360 IEKLIEKKVDWLN 372
           IE+   + +  ++
Sbjct: 363 IERATRQPLTMMD 375


>gi|302388261|ref|YP_003824083.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
 gi|302198889|gb|ADL06460.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
           WM1]
          Length = 572

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 129/378 (34%), Positives = 216/378 (57%), Gaps = 9/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L  +++ AV D G+ + +PIQ + IP+  +  D+ G AQTGTGKTA+F +P+L  
Sbjct: 19  FDELQLDERILRAVADMGFEEASPIQAQAIPVQAEGRDIIGQAQTGTGKTAAFGIPLLQK 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    +++      L PTRELA QVAD   +  K  +    + I  G     Q + L+ 
Sbjct: 79  IDPKVKKLQAVA---LCPTRELAIQVADEIRRLAKYMHGVKVVPIYGGQDIVKQIRSLKD 135

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR++DH  R  +  +++  +++DEAD ML+MGF+  ++ I S +P  RQT+
Sbjct: 136 GTQIIIGTPGRVMDHMRRKTVKFDHVHTVIMDEADEMLNMGFLEDMETILSQLPEERQTV 195

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM   + +++  F Q+P  ++V     T   +   +     +   +          
Sbjct: 196 MFSATMPPAIMEIARKFQQDPVTVKVVKKELTVPKVTQYYYEVKPKSKVEVMCRLL---D 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  + FCN KK V  L  +L+ +G+    +HG++ Q  R +++ +F+ G  +++VA
Sbjct: 253 MYAPKLSVAFCNTKKQVDELVQALQGRGYFAEGLHGDLKQIQRDRVMGSFRNGKTEILVA 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G AF+ V  +++  +  I+
Sbjct: 313 TDVAARGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGREGIAFSFVVGKEVYKLRDIQ 372

Query: 362 KLIEKKVDWLNGDLSSLN 379
           +  + K+  +   + SLN
Sbjct: 373 RYCKTKI--VPQAIPSLN 388


>gi|242096928|ref|XP_002438954.1| hypothetical protein SORBIDRAFT_10g028940 [Sorghum bicolor]
 gi|241917177|gb|EER90321.1| hypothetical protein SORBIDRAFT_10g028940 [Sorghum bicolor]
          Length = 414

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 196/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 42  SFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G       + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 102 QLDYGLVE---CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS 158

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 159 GVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKIQVG 218

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 219 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDL--YE 276

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 277 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  I+
Sbjct: 337 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 396

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     ++ L  +++ L
Sbjct: 397 KFYNVVIEELPANVADL 413


>gi|221311883|ref|ZP_03593730.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221316207|ref|ZP_03598012.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221321119|ref|ZP_03602413.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221325403|ref|ZP_03606697.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|255767828|ref|NP_391790.2| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|254763269|sp|P42305|DBPA_BACSU RecName: Full=ATP-dependent RNA helicase dbpA
 gi|225185456|emb|CAB15947.2| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 479

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 143/424 (33%), Positives = 227/424 (53%), Gaps = 20/424 (4%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M  F +  +S  ++ A+   GY +PT +Q   IP  L+R D+   +QTG+GKTASF +P+
Sbjct: 1   MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +      +   P+ LIL PTRELA QV ++    G+   +    + G   F+ Q  +L
Sbjct: 61  CELANWDENK---PQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAEL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++ + +++ TPGR+LDH  +G L ++ +  LVIDEAD ML+MGFI  ++ I   +P  R 
Sbjct: 118 KQKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERT 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT+  +++K+S  ++QNP+ IEV     T   IEH   A      +    L + +
Sbjct: 178 TMLFSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEH---AVIQVREENKFSLLKDV 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +   + IIFC  K++V  L   L+  G+    IHG + Q  R  +++ FK G  + +
Sbjct: 235 LMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI ++  V N+D+P   E+Y+HR GRTGRAG  GKA + V   + + +  
Sbjct: 295 VATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLAD 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+ I  ++  +                +Q   ARK      K       KK+ S + + 
Sbjct: 355 IEEYIGFEIQKIEAP-------------SQEEVARKKPEFLAKLNDRPESKKDKSEELNK 401

Query: 420 IPLK 423
             +K
Sbjct: 402 DIMK 405


>gi|119596074|gb|EAW75668.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, isoform CRA_d [Homo
           sapiens]
          Length = 763

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 143/390 (36%), Positives = 219/390 (56%), Gaps = 4/390 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 218 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 277

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 278 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D+LI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 397

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTDE++ ++   L+NP RI VN+ +  A  +   F+            +   L
Sbjct: 398 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 457

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 458 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 517

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  
Sbjct: 518 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 577

Query: 360 IEKLIEKKVDW--LNGD-LSSLNPPLEKID 386
           I K  +  V    L  D +      +EK++
Sbjct: 578 IVKAAKAPVKARILPQDVILKFRDKIEKME 607


>gi|21957415|gb|AAM84284.1|AE013672_2 inducible ATP-independent RNA helicase [Yersinia pestis KIM 10]
 gi|45435306|gb|AAS60865.1| inducible ATP-independent RNA helicase [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 669

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 139/378 (36%), Positives = 229/378 (60%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS  ++ A+ D GY KP+PIQ++ IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 13  SFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLH 72

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     ++ P+ L+L PTRELA QVA+    + K+ N    + +  G  ++ Q + L 
Sbjct: 73  NIKA---DLKSPQVLVLAPTRELAVQVAEALSSFSKHINGVNVVALYGGQRYDVQLRALR 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 130 QGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQT 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +      Y K  AL++    
Sbjct: 190 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWRVGGGYRKNEALVR--FL 247

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 248 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 307

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 308 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNI 367

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 368 ERTMKLTIPEVELPNADL 385


>gi|51594838|ref|YP_069029.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis IP
           32953]
 gi|108808981|ref|YP_652897.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Antiqua]
 gi|108810764|ref|YP_646531.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Nepal516]
 gi|145600551|ref|YP_001164627.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Pestoides F]
 gi|153947592|ref|YP_001402544.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis IP
           31758]
 gi|153997472|ref|ZP_02022572.1| cold-shock dead-box protein A [Yersinia pestis CA88-4125]
 gi|161484874|ref|NP_668033.2| ATP-dependent RNA helicase DeaD [Yersinia pestis KIM 10]
 gi|161511438|ref|NP_991988.2| ATP-dependent RNA helicase DeaD [Yersinia pestis biovar Microtus
           str. 91001]
 gi|162420533|ref|YP_001608294.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Angola]
 gi|165925696|ref|ZP_02221528.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165936744|ref|ZP_02225311.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166010049|ref|ZP_02230947.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166214269|ref|ZP_02240304.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167398750|ref|ZP_02304274.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167420623|ref|ZP_02312376.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167423076|ref|ZP_02314829.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|186893847|ref|YP_001870959.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis PB1/+]
 gi|218930502|ref|YP_002348377.1| ATP-dependent RNA helicase DeaD [Yersinia pestis CO92]
 gi|229839140|ref|ZP_04459299.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229896629|ref|ZP_04511796.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|229899704|ref|ZP_04514845.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229900962|ref|ZP_04516086.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|270489144|ref|ZP_06206218.1| ATP-dependent RNA helicase DeaD [Yersinia pestis KIM D27]
 gi|294505188|ref|YP_003569250.1| cold-shock dead-box protein A [Yersinia pestis Z176003]
 gi|51588120|emb|CAH19726.1| cold-shock dead-box protein A [Yersinia pseudotuberculosis IP
           32953]
 gi|108774412|gb|ABG16931.1| cold-shock dead-box protein A [Yersinia pestis Nepal516]
 gi|108780894|gb|ABG14952.1| cold-shock dead-box protein A [Yersinia pestis Antiqua]
 gi|115349113|emb|CAL22076.1| cold-shock dead-box protein A [Yersinia pestis CO92]
 gi|145212247|gb|ABP41654.1| cold-shock dead-box protein A [Yersinia pestis Pestoides F]
 gi|149289109|gb|EDM39189.1| cold-shock dead-box protein A [Yersinia pestis CA88-4125]
 gi|152959087|gb|ABS46548.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia
           pseudotuberculosis IP 31758]
 gi|162353348|gb|ABX87296.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           Angola]
 gi|165915393|gb|EDR34003.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165922308|gb|EDR39485.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165990956|gb|EDR43257.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166204501|gb|EDR48981.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166961429|gb|EDR57450.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167051254|gb|EDR62662.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167057246|gb|EDR66992.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|186696873|gb|ACC87502.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682301|gb|EEO78393.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|229687196|gb|EEO79271.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695506|gb|EEO85553.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229700407|gb|EEO88439.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|262363250|gb|ACY59971.1| cold-shock dead-box protein A [Yersinia pestis D106004]
 gi|262367181|gb|ACY63738.1| cold-shock dead-box protein A [Yersinia pestis D182038]
 gi|270337648|gb|EFA48425.1| ATP-dependent RNA helicase DeaD [Yersinia pestis KIM D27]
 gi|294355647|gb|ADE65988.1| cold-shock dead-box protein A [Yersinia pestis Z176003]
 gi|320016694|gb|ADW00266.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 664

 Score =  166 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 139/378 (36%), Positives = 229/378 (60%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS  ++ A+ D GY KP+PIQ++ IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 8   SFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLH 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     ++ P+ L+L PTRELA QVA+    + K+ N    + +  G  ++ Q + L 
Sbjct: 68  NIKA---DLKSPQVLVLAPTRELAVQVAEALSSFSKHINGVNVVALYGGQRYDVQLRALR 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 125 QGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +      Y K  AL++    
Sbjct: 185 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWRVGGGYRKNEALVR--FL 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 243 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 303 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNI 362

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 363 ERTMKLTIPEVELPNADL 380


>gi|289550302|ref|YP_003471206.1| Cold-shock DEAD-box protein A [Staphylococcus lugdunensis HKU09-01]
 gi|315660238|ref|ZP_07913093.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           lugdunensis M23590]
 gi|289179834|gb|ADC87079.1| Cold-shock DEAD-box protein A [Staphylococcus lugdunensis HKU09-01]
 gi|315494665|gb|EFU83005.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           lugdunensis M23590]
          Length = 504

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 144/457 (31%), Positives = 232/457 (50%), Gaps = 15/457 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DLG+S K V  + + G+ +PTPIQ  +IP  L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKDLGISEKTVQTLENMGFKEPTPIQKDSIPYALEGRDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +          ++LIL PTRELA QVA+   ++ +  N+ V  + GG+P + Q K L++
Sbjct: 63  KVVN----KSGVQSLILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPIDRQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L  N I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     +     +  K           
Sbjct: 179 MLFSATMPKAIQALVQQFMKTPQIVKTMNNEMSDPQIDEYYTIVKELEKFDTFT--NFLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 237 VHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 297 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           ++  ++       +++L PP  K  +       K       S   + R +  SS+     
Sbjct: 357 EVNSRR-------MTALRPPHRKEVLKAREDDIKEKVQNWMSKDNEPRLQRISSELLKEY 409

Query: 422 LKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
                  S LQ+ ++ ND   +      P  +  KNR
Sbjct: 410 DSTELVASLLQELVEANDEVEVQLTFEKP--LARKNR 444


>gi|149189303|ref|ZP_01867589.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1]
 gi|148836862|gb|EDL53813.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1]
          Length = 431

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 158/431 (36%), Positives = 235/431 (54%), Gaps = 11/431 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G S ++V A+ + GY K TP+Q + IP   + HD+   AQTGTGKTA+F LP++
Sbjct: 1   MSFLSQGFSSEIVQALTECGYEKLTPVQQQAIPHARRGHDILAHAQTGTGKTAAFSLPII 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +               IL PTREL  Q+A+N E Y +  +++VA + GG    +Q +K
Sbjct: 61  QQIVDTPKARTRGAVRALILAPTRELVDQIANNIESYTQYVDVSVAAVFGGAKMSSQERK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+++H   G + + N+E LV DEADRMLDMGFI  I+ I S V    
Sbjct: 121 LEAGVDILVATPGRLIEHLELGNVKLANLEFLVFDEADRMLDMGFISAIRTIMSSVNSQP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT + ++  ++++ L+ PKRI VN  +STA+T+ H     Y     +   L   
Sbjct: 181 QTMLFSATSSPQMNALAQDLLRKPKRIIVNAENSTADTVAH---VVYPVDEDRKLELLSE 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +   +  ++F N K+    +   L+  G      HG+  Q SR + L  FK G  ++
Sbjct: 238 LIGRKNWQQVLVFVNYKETANEVVKELKLDGIKAVLCHGDKAQSSRRRALEEFKTGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+++AARGLDI  + HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+   + 
Sbjct: 298 MVATEVAARGLDIQGLPHVVNYDMPFLAEDYVHRIGRTGRAGQQGHAVSFVSREEELTLV 357

Query: 359 AIEKLIEKKVDWL------NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            IE LI+ ++  +        +  +L   +      +    R NN   Q S     R   
Sbjct: 358 QIENLIQHRIKRIQLAGYEPANRDALLQKMHTKPAYKDRQGRTNNASEQGSAERRLRLMR 417

Query: 413 YSSQKSHIPLK 423
               KS    +
Sbjct: 418 AIKNKSSKTTR 428


>gi|115375095|ref|ZP_01462364.1| superfamily II DNA and RNA helicase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310825404|ref|YP_003957762.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|115367933|gb|EAU66899.1| superfamily II DNA and RNA helicase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309398476|gb|ADO75935.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
          Length = 421

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 147/428 (34%), Positives = 226/428 (52%), Gaps = 11/428 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGLSP  + A+  A + +PTPIQ + IP  L   DV G A TGTGKTA++VLP++  
Sbjct: 5   FAQLGLSPTSLDALGRARFTQPTPIQARAIPPALAGKDVVGCAATGTGKTAAYVLPLVER 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               +  +     L+L PTREL  Q+++    + + + LT  +++GG    AQ + L+  
Sbjct: 65  FSGRKGLLG----LVLAPTRELVQQISEPVRLFAEPHGLTHTVVVGGEDMAAQVEALKER 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
              L+ TPGR++D      +    +E LV+DEADRMLDMGF   I+ I   +P  RQTLL
Sbjct: 121 PTFLLATPGRLVDLMASQAVTFPQLEALVLDEADRMLDMGFQFQIETILKALPRRRQTLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  ++ + + + L  P R+EV    + AE  E    +  A+      L       +
Sbjct: 181 FSATLGPDVTRFARDRLYQPVRVEVTRSGTPAERAEQRLYSVKAEEKSALLLTL----MR 236

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF   K+    +  +L++ G+    +H +  Q  R + L  F++GT + +VA+
Sbjct: 237 KNEGTALIFTRTKERADKVHKALQRAGYPCDVLHADRTQSQRKQALDAFRQGTCRCLVAT 296

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+ DVGHV N+D+P+  E+Y+HRIGRT RA   G A T    +D   +  IE 
Sbjct: 297 DIAARGLDVEDVGHVINYDLPHAPEDYVHRIGRTARAQASGVATTFATPKDAPTLARIES 356

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPL 422
           ++  KV  L         P+ + +  +H  A+K+   PQK  G  +R  + +  +  +  
Sbjct: 357 IMRTKVPRLPVPRED---PVFQEEWQRHLAAQKDPGPPQKDHGVSKRTPDQAPGRHALTH 413

Query: 423 KESEKISK 430
           K      K
Sbjct: 414 KRKSSSQK 421


>gi|167748599|ref|ZP_02420726.1| hypothetical protein ANACAC_03372 [Anaerostipes caccae DSM 14662]
 gi|167651913|gb|EDR96042.1| hypothetical protein ANACAC_03372 [Anaerostipes caccae DSM 14662]
          Length = 478

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 130/410 (31%), Positives = 216/410 (52%), Gaps = 16/410 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D GLS +++ A+   GY KPT IQ + IP +L   ++   A TG+GKTA+F +P+  
Sbjct: 4   EFQDFGLSIEILEALNGLGYKKPTNIQQEVIPPMLAGKNIVAKAPTGSGKTAAFAIPICQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +         P+ L+LEP RELA QV+      G+   L V  + GG P + Q + L++
Sbjct: 64  NVRW---EENAPQALVLEPARELAVQVSQEMFHIGRKKRLKVPAVFGGFPIDKQIRTLKQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + ++  TPGR++DH  R  L ++N++ LVIDEAD MLDMGFI  ++ I SLVP   +  
Sbjct: 121 KSHIVAGTPGRVMDHIRRETLKLSNVQWLVIDEADLMLDMGFIDEMKQILSLVPADCRIS 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  E++++++ F+     +         E         Y    ++       +  
Sbjct: 181 LFSATLKPEIRELADEFIPEAVLVMQEA---GEEQAPAITEKLYFASQERKYDTFLDILM 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  ++ +IFC  ++    L   L ++      +HG+++Q+ R+K ++ F+ G  + ++A
Sbjct: 238 DENPQSCMIFCGTREMTNVLFQKLRRKRIFCGMLHGDMEQKERLKTVNAFRRGGFRFLIA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D  ++ HV N+D P   E Y+HRIGRTGR G  G A +LV ++D + +  +E
Sbjct: 298 TDVAARGIDFEEISHVVNYDFPTGKETYVHRIGRTGRNGNSGTAVSLVTEDDQRMLKQVE 357

Query: 362 KLIEKKVDWLNGDLSSLNPPL---EKIDIAQHNHARKNNPIPQKSTGFDR 408
             + +       +L    PP+   EK          K    P+K    + 
Sbjct: 358 TYLGR-------ELPVTEPPVIGDEKERAFWKFQRIKAERKPEKGEALNE 400


>gi|90577843|ref|ZP_01233654.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90440929|gb|EAS66109.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 446

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 127/446 (28%), Positives = 207/446 (46%), Gaps = 10/446 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F DLGL P+++  +    + + T IQ   IP+ +   D+   ++TG+GKT +F+LP M
Sbjct: 1   MHFKDLGLDPRLLKKINHLAFDRATEIQQTAIPVAIAGKDILASSKTGSGKTLAFLLPAM 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +        R PR LIL PTRELA QV                L++GG  F  Q K L
Sbjct: 61  QRMYRSKPFTRRDPRVLILTPTRELAKQVFAQLRTLNAGTPYDGTLIVGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                 ++ TPGR+ DH       ++ +E+L++DEADRMLD+GF   ++ I       R+
Sbjct: 121 RNDPMFVVATPGRLADHLEHRSTRLDGLEMLILDEADRMLDLGFEAQLRRINEAANHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D    V            ++   S  E  +         +      L   +
Sbjct: 181 QTLMFSATLDHSDVVEIASEMLDNPKRISIGHSAEEHKDITQRFILCDHLDHKQALLDKI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  IIF   + +   L   L ++     A+ G+++Q  R  I+S F+    +++
Sbjct: 241 LETQDYKQVIIFTATRADTDRLTAELNERKLKAVALSGSLNQNQRNSIMSQFERTCHKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDI +V  V NFD+P  AE Y+HR+GRTGRAG  G A +LV  +D K    
Sbjct: 301 VTTDIASRGLDIDNVSLVINFDMPKHAEEYVHRVGRTGRAGNKGDAISLVGPKDWKSFKN 360

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKIDIAQH----NHARKNNPIPQKSTGFDRRK 410
           +E  +++K+++     L G    L P  +K  I +         K    P+     D+R 
Sbjct: 361 VEAFLKQKIEFTTIEGLEGKFKGLKPAPKKKFIKKKPTGDKVVAKKQQAPRAKKKVDKRF 420

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQ 436
               +  + + + + ++ + + +D +
Sbjct: 421 YENQAVGNDVFMPKKKRNTDVSKDGE 446


>gi|170025939|ref|YP_001722444.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis YPIII]
 gi|169752473|gb|ACA69991.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           YPIII]
          Length = 664

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 142/378 (37%), Positives = 231/378 (61%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS  ++ A+ D GY KP+PIQ++ IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 8   SFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLH 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            ++     ++ P+ L+L PTRELA QVA+    + K+ N + V  L GG  ++ Q + L 
Sbjct: 68  NIKA---DLKSPQVLVLAPTRELAVQVAEALSSFSKHINGVKVVALYGGQRYDVQLRALR 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 125 QGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   +      Y K  AL++    
Sbjct: 185 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWRVGGGYRKNEALVR--FL 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 243 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 303 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNI 362

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 363 ERTMKLTIPEVELPNADL 380


>gi|19552380|ref|NP_600382.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|21323923|dbj|BAB98549.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
           ATCC 13032]
          Length = 732

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 144/371 (38%), Positives = 216/371 (58%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  +V+ AV   GY  P+PIQ +TIP++++  DV G+AQTGTGKTA+F LP+L  
Sbjct: 104 FDALGLPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTGTGKTAAFALPILAR 163

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++K    VR P+ L+L PTRELA QVAD+F+ +  +      L I  G  +  Q   L R
Sbjct: 164 IDKS---VRSPQALVLAPTRELALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRR 220

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  +G L ++ +  LV+DEAD ML+MGF   ++ I    P  +Q  
Sbjct: 221 GAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVA 280

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++S+ +L NP  I V + + T   I   F+       +        +  
Sbjct: 281 LFSATMPNGIRRLSKQYLNNPAEITVKSETRTNTNITQRFLNVAH---RNKMDALTRILE 337

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K     +   L  +GFS  AI+G+I Q  R + +   K+G + ++VA
Sbjct: 338 VTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 397

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV NFD+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 398 TDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 457

Query: 362 KLIEKKVDWLN 372
           +     +  + 
Sbjct: 458 RATNAPLHEME 468


>gi|261343045|ref|ZP_05970903.1| ATP-dependent RNA helicase RhlB [Enterobacter cancerogenus ATCC
           35316]
 gi|288314609|gb|EFC53547.1| ATP-dependent RNA helicase RhlB [Enterobacter cancerogenus ATCC
           35316]
          Length = 421

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 138/411 (33%), Positives = 210/411 (51%), Gaps = 10/411 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKV+ A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVIEALETKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
            AIE  I   +     +    LS L PP +++  A+  +  + +  P+   
Sbjct: 369 PAIETYIGHSIPQSKYNPDALLSELPPP-KRLTRARPGNGPRRSGAPRNRR 418


>gi|255950466|ref|XP_002566000.1| Pc22g21030 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593017|emb|CAP99391.1| Pc22g21030 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 552

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 208/380 (54%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT S+ LP + 
Sbjct: 127 TFDEAGFPAYVLSEVKAQGFDAPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIV 186

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 187 HINAQPLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQIRDL 246

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 247 SRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQ 306

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T ++SAT   ++++++ +FL +  ++ V +   +A       V   A + K+  +++ L 
Sbjct: 307 TCMWSATWPKDVRQLASDFLSDYIQVNVGSTDLSANHRITQIVEVVADFEKRDKMIKHLE 366

Query: 240 QSQDTMKNGIIFCNQKKNV-VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   N  I     K V  ++   L + G+   +IHG+  Q  R  +L+ FK+G   +
Sbjct: 367 KIMEDRSNKCIIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKQGKSPI 426

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRT RAG  G A T    ++ K   
Sbjct: 427 MVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTARAGAKGTAITFFTTDNSKQAR 486

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    ++  L+ +
Sbjct: 487 DLITILTEAKQQIDPRLAEM 506


>gi|254443756|ref|ZP_05057232.1| DbpA RNA binding domain family [Verrucomicrobiae bacterium DG1235]
 gi|198258064|gb|EDY82372.1| DbpA RNA binding domain family [Verrucomicrobiae bacterium DG1235]
          Length = 603

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 154/400 (38%), Positives = 222/400 (55%), Gaps = 14/400 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL LS  V  A+++ GY  P+PIQ + IP+VL   D+ G AQTGTGKTA+F LP+L++
Sbjct: 14  FADLSLSQPVQDALVEIGYETPSPIQARAIPVVLSGRDLIGQAQTGTGKTAAFALPLLSM 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+        P+ +IL PTRELA QV++    YG+         I  G  F  Q + L+R
Sbjct: 74  LDPNE---DGPKAIILAPTRELALQVSEAISNYGRKVKRLEVTAIYGGTDFTRQFRALDR 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI+DH  RG L ++ I  +V+DEAD ML MGFI  ++ I    P  RQT 
Sbjct: 131 KPAIVVGTPGRIMDHIRRGSLDLSRISHVVLDEADEMLRMGFIEDVEWILEHTPSERQTA 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +  +++  L+ P  + +   ++T  T+   F+       K    +   L  
Sbjct: 191 LFSATMPPRIAAIAKKQLKEPVTVAIKNTTATVSTVRQRFIKCNGMRHKIE--VLGNLLE 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I+F   K     +   L   G +V AIHG+I Q  R K +S  KEG I ++VA
Sbjct: 249 TEERDAAIVFTRTKSAASMIAEELAASGHAVEAIHGDITQNKREKAVSLLKEGKIDILVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HVFNFD+P+ AE YIHRIGR GRAGR G+A  L+ + D + +  IE
Sbjct: 309 TDVAARGLDVDRISHVFNFDIPDDAEPYIHRIGRAGRAGRSGEAILLLTRRDFRKLRDIE 368

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
               +++  +        PP  +  IA+   A+    I +
Sbjct: 369 DATRQQMQPM--------PPPSRALIAEIRQAKLEKKIGE 400


>gi|114321219|ref|YP_742902.1| DEAD/DEAH box helicase domain-containing protein [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227613|gb|ABI57412.1| DEAD/DEAH box helicase domain protein [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 438

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 128/385 (33%), Positives = 201/385 (52%), Gaps = 3/385 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   ++  +  AG+   TPIQ  T+P  L+  D+ G AQTGTGK+A+F+L  +  
Sbjct: 11  FDTLGLHDALMDGIKRAGFEYCTPIQAATLPKALEGRDIAGQAQTGTGKSAAFLLAAMHR 70

Query: 63  LEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L           P TLIL PTRELA Q+  +  + G+   L  A + GG  +EAQ ++L+
Sbjct: 71  LMTVPVEEGKEGPWTLILAPTRELALQIHRDALQLGRYTGLKCAAIYGGTGYEAQRQQLQ 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D++I TPGR++D F +    + +IE++++DEADRM D+GFI  I+ +   +P   + 
Sbjct: 131 EGVDIIIGTPGRVIDFFKQRIFHLKHIEVVILDEADRMFDLGFIADIRYLMRRMPEPSKR 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +    + T   + +   +        V   S      +      +    +K  LL  L++
Sbjct: 191 MNMLFSATLSHRVMELAYEHLNDPEVVRIESEQITADKVRQKLYHVSKDEKIPLLLGLIR 250

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++ M   IIF N K+    +   L         I G+I Q+ R  +L  F++G ++ +V
Sbjct: 251 QEEAMNRSIIFVNTKRAADRVTGYLLGNDIEAAVISGDIPQKKRESLLKRFQDGELRFLV 310

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL I DV HV N+D+P   E+Y+HRIGRT RAG  G A +   +E +  +  I
Sbjct: 311 ATDVAARGLHIEDVSHVINYDLPQDPEDYVHRIGRTARAGASGDAISFACEEYVFSLPDI 370

Query: 361 EKLIEKKVD-WLNGDLSSLNPPLEK 384
           E  IE+++   +      + P   K
Sbjct: 371 ESFIEQRIPAEMPSPEMMVEPKPPK 395


>gi|52840505|ref|YP_094304.1| DEAD-box ATP dependent DNA helicase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52627616|gb|AAU26357.1| ATP-dependent RNA helicase, DEAD box family [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 414

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 152/375 (40%), Positives = 221/375 (58%), Gaps = 4/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  L L   +  AV + GY  PT IQ+K IPL+L  HD+ G AQTGTGKTASFVLP+ 
Sbjct: 1   MSFKQLALIEPLNRAVSELGYTTPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               ++ +      + LIL PTRELA QV ++  +YGK   L  A++ GG+    Q K+L
Sbjct: 61  QKASQQTQTSPNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++L+ TPGR+LD + +  +  + I+ LV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 DSGLEILVATPGRLLDLYQQRAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT T E++ ++ N L     I++   ++  +TI+    +    +           
Sbjct: 181 NLLFSATFTPEVRALARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSHLLHK 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       ++F   K     L   L +      AIHGN  Q  R+K L++FK G +Q +
Sbjct: 241 NNW---GQTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRIKALADFKSGKVQTL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI  +  V NFD+P+  E+Y+HRIGRTGRAG  G A +LV+ E+IK + +
Sbjct: 298 IATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKLLLS 357

Query: 360 IEKLIEKKVDWLNGD 374
           IEKLI +K++ +   
Sbjct: 358 IEKLINQKLERIKIK 372


>gi|323485086|ref|ZP_08090439.1| hypothetical protein HMPREF9474_02190 [Clostridium symbiosum
           WAL-14163]
 gi|323401642|gb|EGA93987.1| hypothetical protein HMPREF9474_02190 [Clostridium symbiosum
           WAL-14163]
          Length = 484

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 140/417 (33%), Positives = 217/417 (52%), Gaps = 13/417 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GLS  ++ ++   GY +PT IQ + IP +L+  +V G A TG+GKTA+F +P+  
Sbjct: 8   SFGAYGLSDDILESLRLLGYERPTEIQQQVIPAMLEGKNVVGRAPTGSGKTAAFAIPICD 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +        +P+ LILEPTREL  QV +     G+   L V  + GG P + Q + L++
Sbjct: 68  KIIW---EENLPQALILEPTRELTVQVQEEVFHIGRKKRLKVPAVFGGFPIDKQIRSLKQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + ++  TPGR++DH  RG L+++ +  LVIDEAD MLDMGFI  ++ I  L+    +  
Sbjct: 125 KSHIVTGTPGRVMDHIRRGSLILDKVTCLVIDEADLMLDMGFIDEVKQILDLLSPECRIA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  E+++ + + + +   I    P +    I      T  +   K  L     ++
Sbjct: 185 LFSATLKPEIREFAGSHIHDMVMIFTEQPEAAENAITEELFETDNENKFKVFLNVLYREN 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFC  ++ V  L   L +       IHG ++Q+ R+K +  F+ G I+ ++A
Sbjct: 245 PQCC---IIFCGTREMVNVLFQKLRRHRIFCGMIHGELEQKERLKTIDAFRRGAIRYLIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ ++ HV N+D P   E Y+HRIGRTGR GR GKA +LV  ED + +   E
Sbjct: 302 TDVAARGIDLENITHVINYDFPTGRETYVHRIGRTGRNGRTGKAVSLVTAEDRRMLQMTE 361

Query: 362 KLIEKKVDWLNGDLSS-------LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           +   + +  L    SS             K +      A  N  I + S G  R+ K
Sbjct: 362 EYTGRSLPVLVCPESSGEEEKNFWKSQRLKTEAKPSKRAALNQDITRLSIGGGRKSK 418


>gi|307178385|gb|EFN67130.1| Probable ATP-dependent RNA helicase DDX47 [Camponotus floridanus]
          Length = 435

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 146/439 (33%), Positives = 242/439 (55%), Gaps = 9/439 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           D+  LGL   +    +   + +PT IQ + IPLVL+  DV G+A+TG+GKTA+F LP+L 
Sbjct: 3   DWKALGLVDTLCTTCIQLKWNEPTKIQREAIPLVLEGKDVIGLAETGSGKTAAFALPILQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R      LIL PTRELA Q+++ FE  G +  +  A+++GG+   AQ   LE+
Sbjct: 63  ALLENPQRYFA---LILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMHAQGLLLEK 119

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K      I+ L++DEADR+L+M F   +  I  ++P  R+T
Sbjct: 120 KPHIIIATPGRLVDHLENTKGFNLRQIKFLIMDEADRILNMDFEVEVNKILRVMPRERRT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATMT ++QK+    L+NP ++EV+T   T E ++  ++       K   +    + 
Sbjct: 180 LLFSATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPV---KFKDVYLVHIL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    N +IFC    N V     L   GF+   +HG + Q  R+  L+ F+     +++
Sbjct: 237 NELAGNNFMIFCGTCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFRAKNRSILI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR G++ T + + D++    I
Sbjct: 297 STDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFITQYDVELYQRI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK--NYSSQKS 418
           E+LI K++     +   +    E++  AQ         I +      R++   N    + 
Sbjct: 357 EQLISKQLPLYPTEEEEVMLLQERVSEAQRIVKMDMKNIEENKKLGKRKRGSNNEDDTEQ 416

Query: 419 HIPLKESEKISKLQQDIQE 437
            I +++  K+   ++ +++
Sbjct: 417 SIGVRKRMKVKSKRKVMRK 435


>gi|302765623|ref|XP_002966232.1| hypothetical protein SELMODRAFT_143895 [Selaginella moellendorffii]
 gi|300165652|gb|EFJ32259.1| hypothetical protein SELMODRAFT_143895 [Selaginella moellendorffii]
          Length = 412

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 128/377 (33%), Positives = 193/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 40  TFDSMGLHENLLRGIYAYGFEKPSAIQQRGIVPFCRGLDVIQQAQSGTGKTATFCSGILQ 99

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+         + L+L PTRELA Q+       G      V   +GG       +  + 
Sbjct: 100 QLDGHLNE---CQALVLAPTRELAQQIEKVMRALGDYLQTKVHACVGGTDVRQDQRICQA 156

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L   +I + V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 157 GVHVVVGTPGRVYDMLRRRALRSEHIRMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVG 216

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E  +++  F+ NP RI V     T E I+  +V    +  K   L       
Sbjct: 217 LFSATMPPEALEITRKFMSNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDL--YE 274

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IFCN ++ V  L   L  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 275 TLAITQSVIFCNTRRKVDWLTDKLRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 334

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   + K+D K +  I+
Sbjct: 335 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFLTKDDEKMLFDIQ 394

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     ++ L  +++ L
Sbjct: 395 KFYNTVIEELPSNVADL 411


>gi|254519975|ref|ZP_05132031.1| ATP-dependent RNA helicase DeaD [Clostridium sp. 7_2_43FAA]
 gi|226913724|gb|EEH98925.1| ATP-dependent RNA helicase DeaD [Clostridium sp. 7_2_43FAA]
          Length = 481

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 141/432 (32%), Positives = 246/432 (56%), Gaps = 17/432 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ LS +++ A+ + G+ KP+ +Q + IP +L + D+   +QTG+GKTASF +P+  
Sbjct: 5   KFENMNLSEEILKALKNLGFEKPSEVQQEVIPYILDKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++     +V+    LIL PTRELA QV ++    G+   +  A + G  PF  Q ++L++
Sbjct: 65  LVNVEENKVK---ALILVPTRELAIQVKEDISNIGRLKKVRCAAIFGKQPFNEQIRELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++  TPGR++DH  RG L +N+I+ ++IDEAD+ML+MGFI  I ++   +P ++ T 
Sbjct: 122 RVHIVCGTPGRVIDHIERGNLDINDIDFVIIDEADKMLNMGFIDQITDVLDKLPQSKNTA 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  E++ +  N++ NP  + + +     + I       +    ++          
Sbjct: 182 LFSATIPKEIEGLYSNYMNNPTVLNIRSKVFNRDKI---SEKYFNVDREEKFKYLLKSLY 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T ++ IIFCN K +V NL   L+K+  SV  +HG++DQ+ R+  + NFK    +++VA
Sbjct: 239 AFTDESAIIFCNTKDSVRNLSSLLKKEKISVKELHGDMDQKDRLATMENFKNKEFKVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ I  + +VFN++VP   E+Y+HRIGR+GR  + G A +LV+K + + ++ IE
Sbjct: 299 TDVAARGIHINHITNVFNYEVPIEKESYVHRIGRSGRGDKKGLAISLVSKGERRFLNEIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ--KSH 419
           + I   ++      ++L    E I+  +     + N    K+      KKN  ++  K H
Sbjct: 359 EYINYSIEE-----ANLLEYEEIIEGRKRFFESQKNDYNNKT----NVKKNIHNEVTKIH 409

Query: 420 IPLKESEKISKL 431
           I   + +KI  +
Sbjct: 410 ITAGKKKKIRNI 421


>gi|320034926|gb|EFW16869.1| ATP-dependent RNA helicase dhh1 [Coccidioides posadasii str.
           Silveira]
          Length = 512

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 124/412 (30%), Positives = 200/412 (48%), Gaps = 10/412 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                   ++   + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 107 ERT---NPKISKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLS 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 164 DTVHIIVGTPGRILDLASKGVADLSECTTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F     R           T+            ++       L 
Sbjct: 224 MLFSATFPMIVKS----FKDKHMRNPYEINLMDELTLRGITQYYAFVEERQKVHCLNTLF 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q++R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQNRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRYNLYKI 399

Query: 361 EKLIEKKVDWLNGDLSS---LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           E+ +  ++  +   +     +    E I     N + + NP  Q +   D +
Sbjct: 400 EQELGTEIQPIPPSIDKKLYVYDTPETIPRPIANASTERNPPAQLAQSSDNQ 451


>gi|307545041|ref|YP_003897520.1| ATP-dependent RNA helicase RhlE [Halomonas elongata DSM 2581]
 gi|307217065|emb|CBV42335.1| ATP-dependent RNA helicase RhlE [Halomonas elongata DSM 2581]
          Length = 433

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 162/389 (41%), Positives = 230/389 (59%), Gaps = 6/389 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL  +++ A+   GY +PTPIQ + IP VL+  D+   AQTGTGKTA F LPML
Sbjct: 1   MSFSDLGLRAELLSAIEAQGYTEPTPIQRQAIPAVLEGGDLLASAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G+   +      +L PTRELAAQV ++   YG++ +LT  ++ GG+  + Q   +
Sbjct: 61  QRLADGKRPAKRGVRALVLTPTRELAAQVGESVRDYGRHLSLTSHVIFGGVGQQPQVDAI 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD   +G + ++ +E LV+DEADRMLDMGFI  I+ +  L+P  RQ
Sbjct: 121 RPGLDILVATPGRLLDLQQQGHVDLSGVETLVLDEADRMLDMGFIHDIRKVLKLLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT ++E+Q ++   L  P  IEV   ++TAET+E        +  +        L
Sbjct: 181 NLLFSATFSNEIQTLANQLLDRPTLIEVARRNTTAETVEQAVYRVDREKKRDL---LAHL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++F   K     L   L K+     AIHGN  Q +R K LS FK G +Q++
Sbjct: 238 IQSQRWFQVLVFTRTKHGANRLAEHLGKRDIPAMAIHGNKSQSARTKALSAFKSGDLQVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++ HV NF++PN AE+Y+HRIGRTGRAG  G+A +LV  ++   +  
Sbjct: 298 VATDIAARGLDIDELPHVVNFELPNVAEDYVHRIGRTGRAGNEGQAVSLVCVDEHGLLKN 357

Query: 360 IEKLIEKKVDWL--NGDLSSLNPPLEKID 386
           IEKLI++ +      G     N   E I+
Sbjct: 358 IEKLIKRDLVKHIEPGFEPDPNAKPEPIE 386


>gi|303310497|ref|XP_003065260.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240104922|gb|EER23115.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 510

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 124/412 (30%), Positives = 200/412 (48%), Gaps = 10/412 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 45  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 104

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                   ++   + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 105 ERT---NPKISKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLS 161

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 162 DTVHIIVGTPGRILDLASKGVADLSECTTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 221

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F     R           T+            ++       L 
Sbjct: 222 MLFSATFPMIVKS----FKDKHMRNPYEINLMDELTLRGITQYYAFVEERQKVHCLNTLF 277

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q++R ++  +F+ G  + +V
Sbjct: 278 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQNRNRVFHDFRNGVCRNLV 337

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 338 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRYNLYKI 397

Query: 361 EKLIEKKVDWLNGDLSS---LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           E+ +  ++  +   +     +    E I     N + + NP  Q +   D +
Sbjct: 398 EQELGTEIQPIPPSIDKKLYVYDTPETIPRPIANASTERNPPAQLAQSSDNQ 449


>gi|225569182|ref|ZP_03778207.1| hypothetical protein CLOHYLEM_05264 [Clostridium hylemonae DSM
           15053]
 gi|225161981|gb|EEG74600.1| hypothetical protein CLOHYLEM_05264 [Clostridium hylemonae DSM
           15053]
          Length = 526

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 136/386 (35%), Positives = 218/386 (56%), Gaps = 9/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L P+++ AV   G+ + +PIQ K IPLV +  D+ G AQTGTGKTA+F +P+L  
Sbjct: 6   FEELELCPEIMKAVKKMGFEEASPIQAKAIPLVREGRDIIGQAQTGTGKTAAFGIPLLEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    +++     +L PTRELA QVAD      +  +    L I  G     Q + L+ 
Sbjct: 66  IDPKNKKLQAV---VLCPTRELAIQVADEIRTLAEYMHGIKVLPIYGGQEIVKQIRSLKS 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR++DH  R  + M ++  +V+DEAD ML+MGF   I+ I   VP  RQT+
Sbjct: 123 GVQLMIGTPGRVMDHMRRKTVKMEHVHTVVLDEADEMLNMGFREDIETILEGVPQERQTV 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +  +++ F ++ + ++V     T   IE  +        K    +   L  
Sbjct: 183 LFSATMPKPILDITKKFQKHAEIVKVTKKELTVPNIEQFYYEVKP---KNKEEVLSRLLD 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  ++FCN KK V  L + L  +G+    +HG++ Q  R +++  F+ G   ++VA
Sbjct: 240 IYNPKLSVVFCNTKKQVDILVNGLLGRGYFAAGLHGDLKQAQRDRVMQGFRSGKTDILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ +V  VFN+D+P   E Y+HRIGRTGRAGR G++F+ V+ +++  +  I+
Sbjct: 300 TDVAARGIDVDEVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKLREIQ 359

Query: 362 KLIEKKV--DWLNGDLSSLNPPLEKI 385
           +  + K+    +       N  +EK+
Sbjct: 360 RYCKTKIYAQKVPSLDDVANTKMEKV 385


>gi|206975837|ref|ZP_03236748.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|206745931|gb|EDZ57327.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
          Length = 481

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 138/418 (33%), Positives = 236/418 (56%), Gaps = 15/418 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FFEYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  ++  P  IE+     T + IEH     +     +   L + + + 
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKVAGITTDKIEH---TLFEAIEDEKLSLLKDVTTI 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 240 ENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 363 LIEKKV---------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            I  ++         + + G  +       K  I +  +A  N  I +      ++KK
Sbjct: 360 YIGFEIPKAIGPSKEEVMKGKAAFEEKIHAKPIIKKDKNADINKGIMKLYFNGGKKKK 417


>gi|262403204|ref|ZP_06079764.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
 gi|262350703|gb|EEY99836.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
          Length = 448

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 122/386 (31%), Positives = 186/386 (48%), Gaps = 6/386 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR +IL PTRELA QV           + T  ++ GG  F  Q K L
Sbjct: 61  HKSLKTKAFSAKDPRGVILVPTRELAKQVYGELRSMLGGLSYTATVITGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG   ++ TPGR+ DH +   L ++ +E LV+DEADRMLD+GF   ++ I +     R+
Sbjct: 121 ARGPRFIVATPGRLADHLDHRSLFLDGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D                 +     + E  +         +      L   +
Sbjct: 181 QTLMFSATLDHADVNDMAMEMLNDPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  IIF   + +   L   L K      A+ GN++Q  R  I+  F+    +++
Sbjct: 241 LADADYRQVIIFTATRADTDRLTEKLNKNNLKAVALSGNLNQTQRNTIMGQFERTVFKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDIP V HV NFD+P   E Y+HRIGRTGRAG  G A +LV  +D      
Sbjct: 301 VTTDVASRGLDIPSVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAMSLVGPKDWDSFKR 360

Query: 360 IEKLIEKKVDW-----LNGDLSSLNP 380
           +E  +++++ +     L G    L P
Sbjct: 361 VEAFLQQEIQFDVMEGLEGKFKGLKP 386


>gi|325690149|gb|EGD32153.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK115]
          Length = 523

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 146/373 (39%), Positives = 226/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQA---LIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNRIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++                  
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|220918247|ref|YP_002493551.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956101|gb|ACL66485.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 488

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 143/410 (34%), Positives = 224/410 (54%), Gaps = 17/410 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL LS K + A+  AG+  PTPIQ + IP  L   DV G A TGTGKTA+F+LP++ 
Sbjct: 16  TFADLNLSEKTLQALERAGFEHPTPIQAQAIPPALGGRDVIGAAATGTGKTAAFLLPIIE 75

Query: 62  ILEKG----------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
            L  G                PR L+L PTRELA Q+A   +++G+  ++  AL+IGG+ 
Sbjct: 76  RLGGGAPAPKDRPAAAHGKPGPRALVLAPTRELAVQIAGELDRFGRGRHVRGALVIGGVG 135

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
             AQ+  L     + + TPGR++DH  +G   ++ +E+LV+DEADRMLDMGF P ++ I 
Sbjct: 136 MGAQSAALRDHEVI-VATPGRLVDHLQQGTARLDGLEVLVLDEADRMLDMGFAPQLKRIL 194

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           + VP  RQTLLFSATM  E+ +    F +   R  V    + + T+            ++
Sbjct: 195 ARVPKVRQTLLFSATMAGEVAE----FARAHLRDPVRVEVARSGTLAERAEQRVFLPEQR 250

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L   +   ++   + ++F   K+    +  +L++ G  V  IH +  Q  R   L  F
Sbjct: 251 EKLPLLMALLEEDDLSTLVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGF 310

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           ++G  +++VA+D+AARG+D+ ++GHV NFD+P+  E+Y+HR+GRT R    G+A    + 
Sbjct: 311 RDGQYRVLVATDIAARGIDVAEIGHVVNFDLPHVPEDYVHRVGRTARMAASGRASAFASP 370

Query: 352 EDIKHIDAIEKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           E++  +  IE+L    +    +  + ++    L++ D AQ N      P 
Sbjct: 371 EELDLLRDIERLTRAPIPRAEVPREHATFQAELQRADAAQANPGPGARPA 420


>gi|324329406|gb|ADY24666.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 481

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 139/418 (33%), Positives = 236/418 (56%), Gaps = 15/418 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FFEYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++K+S  ++ +P  IE+     T + IEH     +     +   L + + + 
Sbjct: 183 FSATLPEDVEKLSRTYMNSPTHIEIKAAGVTTDKIEH---VLFEVIEDEKLSLLKDVTTI 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  + NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 240 ENPDSCIIFCRTQDNVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 363 LIEKKV---------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            I  ++         + + G  +       K  I +  +A  N  I +      ++KK
Sbjct: 360 YIGFEIPKAIGPSKEEVMKGKAAFEEKIHAKPIIKKDKNADINKGIMKLYFNGGKKKK 417


>gi|113954045|ref|YP_730263.1| superfamily II DNA/RNA helicase [Synechococcus sp. CC9311]
 gi|113881396|gb|ABI46354.1| Superfamily II DNA/RNA helicase [Synechococcus sp. CC9311]
          Length = 601

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 140/411 (34%), Positives = 223/411 (54%), Gaps = 15/411 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++ G S  ++  + D GY +P+PIQ   IP ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 50  FSEFGFSEALLKTLADKGYKEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLER 109

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKLER 121
           L+       +P  L+L PTRELA QVA+ F+ Y   +     L I G   F +Q   L R
Sbjct: 110 LQG---DSPLPSVLVLAPTRELAMQVAEAFKAYSAGHPHLNVLAIYGGSDFRSQINALRR 166

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR++DH  +G L  + +  LV+DEAD ML MGFI  ++ I   +P  RQ +
Sbjct: 167 GVDVVVGTPGRVMDHMRQGTLNTSGLRSLVLDEADEMLRMGFIDDVEWILEQLPQERQVV 226

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +E++++S+ +L+ P  I + T     +             +         +  
Sbjct: 227 LFSATMPNEIRRLSKRYLREPAEITIKT---KDKEARRIRHRCITMQNSHKLEALNRVLE 283

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T +  IIF   K   + +  SLE  G  V  ++G++ Q  R + +   ++GT+ ++VA
Sbjct: 284 AVTGEGVIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVERLRKGTVNILVA 343

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N+D+P  +E Y+HRIGRTGRAGR G A   +   + + +  +E
Sbjct: 344 TDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRSGDAILFITPRERRFVGNLE 403

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           + + + ++    D+ S        +I Q    R    +  ++T  D+ ++ 
Sbjct: 404 RAVGQAIE--PMDIPS------NAEINQSRLDRLRTRLSTEATSEDKPEEE 446


>gi|90418358|ref|ZP_01226270.1| putative RNA helicase, DEAD/DEAH box family [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90338030|gb|EAS51681.1| putative RNA helicase, DEAD/DEAH box family [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 455

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 156/388 (40%), Positives = 220/388 (56%), Gaps = 8/388 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF   GL+  ++ A+      +PTPIQ + IP V++  DV GIAQTGTGKTA+F LP++ 
Sbjct: 5   DFKAFGLADTLLSALARLDITQPTPIQAQAIPAVMKGRDVLGIAQTGTGKTAAFSLPVID 64

Query: 62  --ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I + GR   + P+ L+L PTRELA+Q+A N + Y     LT  ++ GG+    Q + +
Sbjct: 65  ALIAKGGRPAPKTPKVLVLTPTRELASQIAGNVKSYTAGTKLTHHVIFGGVSIRPQIEAM 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D++I TPGR+LD  N+  L ++ +  +V+DEADRMLDMGF+  +  I S +P  RQ
Sbjct: 125 RRGVDIVIATPGRLLDLLNQRALTLSEVHHVVLDEADRMLDMGFVKDVMRIVSQLPADRQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSATM   +++++   L NP R+EV     T E I         +  K   L     
Sbjct: 185 SLLFSATMPRAMEELAAKILTNPVRVEVTPEVVTVEKINQSVFLVPQKAKK---LWLIEH 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  +IF   K     L   LEK G    AIHGN  Q +R K L  F+ GT+ ++
Sbjct: 242 LAKPDFEKTVIFTRTKHGANKLAADLEKAGIDARAIHGNKSQGARQKALGEFQTGTVSVL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARG+ + D+ HV NFD+P   E+Y+HRIGRT RAG+ G A  LV   +   +  
Sbjct: 302 VATDIVARGIHVDDISHVVNFDLPEEPESYVHRIGRTARAGKSGIAVALVDPSERSKLRQ 361

Query: 360 IEKLIEKKVDWLNGDLS---SLNPPLEK 384
           IE+L     D    D S    LN P EK
Sbjct: 362 IERLTGLNFDLQQTDYSAHVDLNAPEEK 389


>gi|54293256|ref|YP_125671.1| hypothetical protein lpl0304 [Legionella pneumophila str. Lens]
 gi|53753088|emb|CAH14535.1| hypothetical protein lpl0304 [Legionella pneumophila str. Lens]
          Length = 414

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 161/417 (38%), Positives = 235/417 (56%), Gaps = 14/417 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  L L   +  AV + GY  PT IQ+K IPL+L  HD+ G AQTGTGKTASFVLP+ 
Sbjct: 1   MSFKQLALIEPLNRAVSELGYTTPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               ++  A     + LIL PTRELA QV ++  +YGK   L  A++ GG+    Q K+L
Sbjct: 61  QKAGQQTPASPNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++L+ TPGR+LD + +  +  + I+ LV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 DSGLEILVATPGRLLDLYQQRAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT T E++ ++ N L     I++   ++  +TI+    +    +           
Sbjct: 181 NLLFSATFTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSHLLHK 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       ++F   K     L   L +      AIHGN  Q  R K L++FK G +Q +
Sbjct: 241 NNW---GQTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKVQTL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI  +  V NFD+P+  E+Y+HRIGRTGRAG  G A +LV+ E+IK + +
Sbjct: 298 IATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKLLLS 357

Query: 360 IEKLIEKKVDWLNG-------DLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           IEKLI +K++ +         + S L +  ++K   A      K N   +  T F++
Sbjct: 358 IEKLINQKLERIKIKDFEFLHNFSDLVSAKIQK--FAPPKAGYKGNISRKSRTAFNK 412


>gi|332293602|ref|YP_004432211.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171688|gb|AEE20943.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 452

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 150/431 (34%), Positives = 225/431 (52%), Gaps = 11/431 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   +  A+ D G+ +PTPIQ+  +  V+   DV GIAQTGTGKT +++LP+L
Sbjct: 1   MTFKDLNLDKFLWNALDDMGFTQPTPIQVDALAPVMSGGDVVGIAQTGTGKTYAYLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     R   PR LIL PTREL  QV    EK     ++ VA + GG     Q   + 
Sbjct: 61  RTLPYS--RQENPRVLILVPTRELVLQVVSELEKLTTYIDVRVAGVYGGANINTQKALIA 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TPGR+ D      L + +I+ +VIDE D MLD+GF P + NI  ++P  RQ 
Sbjct: 119 QGQDIVVATPGRLYDLAVSRVLQLKSIQKVVIDEVDVMLDLGFRPQLMNIFDILPKRRQH 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSATMT+++  + ++F   P+ I V    +  E I          Y+K   LL++L  
Sbjct: 179 IMFSATMTEDVDALIKDFFSTPQFIRVAKSGTPLENITQIGYKMPNFYTKVNFLLEELAF 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+   K  +   +++          E     V  IH N  Q  R+  ++ F +G +++MV
Sbjct: 239 SKKYPKTLLFVRDKRMADRLYLKLEEAFPGDVDLIHSNKTQNYRINSINAFAKGKVRMMV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLDI D+ HV N + P   ENY+HRIGRTGRA + G +  L   E+ +++  I
Sbjct: 299 ATDVMARGLDIDDITHVININTPRFPENYLHRIGRTGRAQKEGVSIVLSTPEEDEYLAEI 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E L+  KV        ++ P  E + I++     +  P  ++     R  KN        
Sbjct: 359 EALMGVKV--------AIQPLPEDVAISKE-LTPEERPEAKEIFNPHRWNKNDDDAPGPA 409

Query: 421 PLKESEKISKL 431
              +SEK SK+
Sbjct: 410 FHDKSEKNSKV 420


>gi|294793457|ref|ZP_06758594.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 3_1_44]
 gi|294455027|gb|EFG23399.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 3_1_44]
          Length = 432

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 151/447 (33%), Positives = 234/447 (52%), Gaps = 19/447 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+  +++ A+   G  +PTPIQ ++IP+V + +DV   AQTGTGKT +F+LP+L 
Sbjct: 3   SFKSLGVCDELIIALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPILQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +      V   + LI+ PTREL  Q++D  ++ G   N+ +  LIGG   EAQ ++L R
Sbjct: 63  RVHT---DVHQEQVLIIAPTRELIKQISDEAKELGSILNVDILPLIGGKTIEAQLQQLGR 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+LDH  RG L ++ I  +V+DEAD+ML MGF+P I+N+       RQ L
Sbjct: 120 RPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLIGQTDANRQLL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ D+++ +++ ++  P  +       T E+I+        +           +  
Sbjct: 180 LFSATIPDKIRNLAKAYMSKPISVTAEGKHITLESIDQRVYMMNPEEK---TQRLIKMIE 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D     I+FCN+++  + L + L   G ++  +HG++ Q  R +IL +F +   Q++VA
Sbjct: 237 DDNPFLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI  + HV+N+DVP   + YIHRIGRTGRAG  G A T    +D   +  IE
Sbjct: 297 TDIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGIAVTFATPQDEAWLRRIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           + I+  +     D            I    +A    P   KS    +    Y S K+   
Sbjct: 357 RAIQATLTKYTKDGQ----------IKTKGNA-STAPKRTKSASKPKVTSTYQSTKAKAH 405

Query: 422 LKESEKISKLQQDIQENDADSLGFRGN 448
                K S  +Q  +       G RG 
Sbjct: 406 KARGHKGSNTRQ--RRASTSQTGRRGK 430


>gi|195332686|ref|XP_002033028.1| GM21090 [Drosophila sechellia]
 gi|194124998|gb|EDW47041.1| GM21090 [Drosophila sechellia]
          Length = 522

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 118/441 (26%), Positives = 199/441 (45%), Gaps = 12/441 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +V  +   G    TPIQ K IP +L   D  G A+TG+GKT +F LP+L  
Sbjct: 9   FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILER 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PT ELA Q+++ F   G+   + V ++ GG     +++KL + 
Sbjct: 69  LSE---EPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQR 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++  PGR+ DH         +    ++ +    +  G       I        +  L
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKTRQNL 185

Query: 183 FSATMTDELQKVSENFL---QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           F +    +  K S  F       +  + +  ++     +   +              +  
Sbjct: 186 FFSATMKDFMKESSIFPIASDCFEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKY 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +   N +IF N KK    L  +L+        +HG + Q+ R+  LS FK   I+ +
Sbjct: 246 REGNENANVMIFTNTKKYCQLLSMTLKNMDIDNVCLHGFMRQKERVAALSRFKSNQIRTL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           +A+D+AARGLDIP V  V N  +P   + YIHR+GRT RAGR G + ++     D++ + 
Sbjct: 306 IATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLA 365

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           AIE+ I  K+     D       +E+I   Q N  R+ + +   +  FD R +NY  +  
Sbjct: 366 AIEEEINTKLTEHPID----QRMVERI-FMQVNVTRRESEMQLDNNDFDERAQNYRRKTW 420

Query: 419 HIPLKESEKISKLQQDIQEND 439
            +  K+ +++  L +  Q++ 
Sbjct: 421 IMEGKDPDQMEALYRKKQKDK 441


>gi|254367888|ref|ZP_04983908.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
           holarctica 257]
 gi|134253698|gb|EBA52792.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
           holarctica 257]
          Length = 441

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 152/403 (37%), Positives = 238/403 (59%), Gaps = 8/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+  +  A+   GY KPTPIQ + IP+VL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MKFSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  +  +++   V+DEADRMLDMGFI  ++ I +L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++  FL NP+ +  +  ++T + I                +     
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   ++F   K     +   L   G S  AIHGN  Q +R K L++FK   I ++
Sbjct: 238 IKDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+ N AE+Y+HRIGRTGRAG+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           IE LI   +  + L G  ++ N P+  +  +  N A+K + + 
Sbjct: 358 IEHLIGHLLPREELEGFEATHNVPITSM--SHKNKAKKIDEVK 398


>gi|134301686|ref|YP_001121654.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049463|gb|ABO46534.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 569

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 150/433 (34%), Positives = 241/433 (55%), Gaps = 14/433 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGL+  +V  V+  GY  PTPIQ   IP +L   DV G AQTGTGKTA+F LP++ 
Sbjct: 8   DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++    R R P+ L+L PTRELA QVA+ FE + KN        I  G  + +Q + L+
Sbjct: 68  NMDLAS-RDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ T GR++DH  +G L ++N+  LV+DEAD ML MGFI  ++ + S V    Q 
Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQSQR 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++  + E +L+NP +I+V   + TA T+   F+                 +
Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETE 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +   IIF   K + + +  +L+  G+ V AI+G++ Q  R  I+  F+     ++V
Sbjct: 247 ETDGV---IIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+  + HV N+D+PN  + Y+HRIGRTGRAGR G + +LV  ++++ +  +
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ--HNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           E+     +  +        P  + +  ++  H  AR  + +  K+   D+ K+  +S + 
Sbjct: 364 ERFTGSPMQEV------FMPSAKDLAQSRVEHFKARIISAL-DKNKSLDKYKEIITSIRD 416

Query: 419 HIPLKESEKISKL 431
            + L   E ++ L
Sbjct: 417 ELQLDSEELLAGL 429


>gi|89256570|ref|YP_513932.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315000|ref|YP_763723.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167010034|ref|ZP_02274965.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|89144401|emb|CAJ79691.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129899|gb|ABI83086.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 441

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 152/403 (37%), Positives = 238/403 (59%), Gaps = 8/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+  +  A+   GY KPTPIQ + IP+VL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MKFSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  +  +++   V+DEADRMLDMGFI  ++ I +L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++  FL NP+ +  +  ++T + I                +     
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   ++F   K     +   L   G S  AIHGN  Q +R K L++FK   I ++
Sbjct: 238 IKDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+ N AE+Y+HRIGRTGRAG+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           IE LI   +  + L G  ++ N P+  +  +  N A+K + + 
Sbjct: 358 IEHLIGHLLPREELEGFEATHNVPITSM--SHKNKAKKIDEVK 398


>gi|254517068|ref|ZP_05129126.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3]
 gi|219674573|gb|EED30941.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3]
          Length = 609

 Score =  166 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 139/372 (37%), Positives = 214/372 (57%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L L   ++ A+ D GY  P+ IQ  TIP +L+  D+ G AQTGTGKTA+F LP+L 
Sbjct: 9   SFDELQLPAFLMKALSDVGYETPSAIQTMTIPPLLEGKDLVGQAQTGTGKTAAFALPILA 68

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKLE 120
            L+    ++  P+ L+L PTRELA QVA+ F+KY ++      L I G   +  Q ++LE
Sbjct: 69  RLDP---KLSKPQALVLAPTRELAIQVAEAFQKYARHSKGFKVLPIYGGSDYRTQLRQLE 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG L ++ +  LV+DEAD ML MGFI  ++ I    P  RQ 
Sbjct: 126 RGVHVIVGTPGRVMDHMRRGSLNLSALTTLVLDEADEMLRMGFIDDVEWILEQTPPKRQI 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM D ++++++  L  P+ I +   + T  +I          +          + 
Sbjct: 186 ALFSATMPDAIRRIAKQHLNKPEEITIKLKTVTNASIRQRVWMMGGMHK---LDALTRIL 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   +     L   L  +G++  A++G+I Q  R K + N K+G + +++
Sbjct: 243 ETEDTDGVIIFVRTRIATQELADKLSARGYATAALNGDIAQNQREKTVENLKKGGLDILI 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+PN  E Y+HRIGRTGRAGR G+A    A  + + +  I
Sbjct: 303 ATDVAARGLDVERISHVINYDIPNDPEAYVHRIGRTGRAGRTGEAILFAANRERRLLRTI 362

Query: 361 EKLIEKKVDWLN 372
           E++  +K++ + 
Sbjct: 363 ERVTGQKIESME 374


>gi|302801091|ref|XP_002982302.1| hypothetical protein SELMODRAFT_228839 [Selaginella moellendorffii]
 gi|300149894|gb|EFJ16547.1| hypothetical protein SELMODRAFT_228839 [Selaginella moellendorffii]
          Length = 412

 Score =  166 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 192/377 (50%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 40  TFDSMGLHENLLRGIYAYGFEKPSAIQQRGIVPFCRGLDVIQQAQSGTGKTATFCSGILQ 99

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+         + L+L PTRELA Q+       G      V   +GG       +  + 
Sbjct: 100 QLDGHLNE---CQALVLAPTRELAQQIEKVMRALGDYLQTKVHACVGGTDVRQDQRICQS 156

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L   +I + V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 157 GVHVVVGTPGRVYDMLRRRALRSEHIRMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVG 216

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 217 LFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDL--YE 274

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IFCN ++ V  L   L  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 275 TLAITQSVIFCNTRRKVDWLTDKLRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 334

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   + K+D K +  I+
Sbjct: 335 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFLTKDDEKMLFDIQ 394

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     ++ L  +++ L
Sbjct: 395 KFYNTVIEELPSNVADL 411


>gi|261251247|ref|ZP_05943821.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
 gi|260938120|gb|EEX94108.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
          Length = 419

 Score =  166 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 149/409 (36%), Positives = 224/409 (54%), Gaps = 10/409 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGL   ++  +    +  PT +Q   IP VL+  DV   AQTGTGKTA+F LP++ 
Sbjct: 4   DFQSLGLCSTLLTTLEKLNFKLPTEVQKHAIPHVLEGQDVLAGAQTGTGKTAAFGLPIIQ 63

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +      L+L PTRELA QV DN   Y ++  + V    GG     Q +
Sbjct: 64  RLLESETTRDIQSNDVLALVLVPTRELAQQVFDNITLYAQDTIIKVVTAYGGTSMNVQTR 123

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+LI TPGR+LDH     + +   + LV+DEADRMLDMGF+P I+ I       
Sbjct: 124 NLDQGCDILIATPGRLLDHLFCKNINLTKTQYLVLDEADRMLDMGFMPDIKRILKRCNEE 183

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+ FSAT    ++ ++   L  P  ++V   +STAET+       Y    K+ A L  
Sbjct: 184 RQTMFFSATFDKRIKTIAYKMLSEPVEVQVTPSNSTAETV---KQMVYPVDKKRKAELLA 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L      +  ++F   K+    L   L+  G    +I+G+  Q +R K L +FK G ++
Sbjct: 241 YLIGSRNWQQVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGQVR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++A+D+AARGLDI  +  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++   +
Sbjct: 301 ALIATDVAARGLDIQQLEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAVSLMSRDEEYLL 360

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           +AIE+L++ K+  +WL G   SL   +E  D +     R ++    K+ 
Sbjct: 361 EAIERLLDGKLPQEWLEGFEPSLIEEVET-DRSPKRKGRNSDKRKMKAK 408


>gi|171463886|ref|YP_001797999.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193424|gb|ACB44385.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 479

 Score =  166 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 159/378 (42%), Positives = 232/378 (61%), Gaps = 6/378 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FAD GL P++  AV + GY  PTPIQ ++IP VL  +D+ G AQTGTGKTA+FVLP++
Sbjct: 31  ITFADFGLDPQIQKAVAEQGYNTPTPIQAQSIPHVLAGNDLMGAAQTGTGKTAAFVLPII 90

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             + +  +    P        +L PTRELA QVA+N   Y K+ +L  A++ GG+  + Q
Sbjct: 91  QKILRHASNSASPARHPIRALVLTPTRELAVQVAENAASYSKHTDLRAAVVYGGVDMKEQ 150

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G ++LI T GR+LDH       ++ +EILV+DEADRMLDMGF+P +Q I SL+P
Sbjct: 151 VAILRNGVEILIATLGRLLDHIGSKVANLSQVEILVLDEADRMLDMGFLPDLQRIISLIP 210

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCAL 234
             RQTLLFSAT + E++K+++++L++P  +EV   ++ A+T++       +    +    
Sbjct: 211 AQRQTLLFSATFSPEIKKLAQSYLRSPVTVEVARQNAAADTVKQVVHMVSSADKQRAIVK 270

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + +        +  IIF N +     L  +LE+ G    AIHG+  Q  R   L  FK G
Sbjct: 271 VLEARARAGLSRQCIIFTNSRLGCAKLSRTLERDGIKAGAIHGDKGQGERTLTLDAFKSG 330

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I+ +VA+D+AARGLDIPD+  V N ++P  AE++IHRIGRTGRAG  G A  LV   + 
Sbjct: 331 AIEALVATDVAARGLDIPDMPCVINHELPYNAEDFIHRIGRTGRAGSKGDAIALVDLSEK 390

Query: 355 KHIDAIEKLIEKKVDWLN 372
           + +D IEKL+++K+D   
Sbjct: 391 RLLDDIEKLMKRKLDVKP 408


>gi|91227745|ref|ZP_01261972.1| RhlE [Vibrio alginolyticus 12G01]
 gi|269967907|ref|ZP_06181947.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 40B]
 gi|91188392|gb|EAS74687.1| RhlE [Vibrio alginolyticus 12G01]
 gi|269827430|gb|EEZ81724.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 40B]
          Length = 402

 Score =  166 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 151/405 (37%), Positives = 229/405 (56%), Gaps = 7/405 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV   GY KPT IQ K IP+VL+  ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSASIADAVKALGYEKPTSIQQKAIPIVLRGRNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G   R +  R +IL PTRELA QV  + E YGKN  L    + GG+ +  Q + L
Sbjct: 61  EKLSRGETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVDYAPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR++D + +  +  + +E+LV+DEAD+MLDMGFI  I  I   +P   Q
Sbjct: 121 IEGVDIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDAIDKIVDCMPEHVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT+++ ++ +++N + +P+ I +   S++   I+                     
Sbjct: 181 SLLFSATLSNPVRDLAKNAIIDPEEITIAKHSASKSNIKQWITTVDKDMKSSLLSHLLKE 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++F   K     L   LEK+G    A H   +QR R +++  FK G IQ +
Sbjct: 241 NDW---SQVLVFIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI ++  V N+D+P  A+ Y+HRIGRTGRAG  G+A +LV+K+D K++  
Sbjct: 298 VATGVAARGIDIDNLPVVINYDLPYPADEYVHRIGRTGRAGAKGEAISLVSKDDFKNLCM 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           IE  +   ++ +  +  +   P + + I+  N+  KN   P    
Sbjct: 358 IESRLGHLLERVEIEGFA---PRKPVPISILNYVPKNKRKPHDKR 399


>gi|319956997|ref|YP_004168260.1| dead/deah box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
 gi|319419401|gb|ADV46511.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
          Length = 462

 Score =  166 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 139/362 (38%), Positives = 217/362 (59%), Gaps = 6/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P+V   V  AG+ +P+PIQ + IP++L+  D+ G A TGTGKTA+F LP+L
Sbjct: 1   MTFKDFDLHPEVAKGVRIAGFKEPSPIQKEAIPIILEGRDLVGQAHTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + +G       R L++ PTRELA QV+D     G+   +    + GG+ +  Q   + 
Sbjct: 61  DRIARGEIE----RALVITPTRELATQVSDELYHLGRFAGIRTLAVYGGVGYGRQIALIH 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR+ D + +GK+ + N E++V+DEAD MLDMGF+  ++ I   +P  RQT
Sbjct: 117 RGVQIVVATPGRLKDLYQKGKIDVFNPEVVVLDEADEMLDMGFLDDVREIFEYIPQNRQT 176

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++++  L  P+ I V    +T       +     +  +  A+++ L  
Sbjct: 177 LLFSATMPDPIKELADTLLYEPEFISVVGEETTKNVDIEQYYYVINENQRDEAIVRLLET 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IFC  K+ V  L   L+  GF+   +HG+IDQ  R  I+ +F+ G  ++++
Sbjct: 237 ENY--DKALIFCRMKREVDRLAEELKALGFNAAGLHGDIDQMERDAIVKSFRRGETRILI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI +V HVFN+ +P   ++Y+HRIGRTGRAG+ G+A TL + E+ + +  I
Sbjct: 295 ATDVAARGLDIKNVTHVFNYHIPFDPQSYVHRIGRTGRAGKRGRAITLASTEEFRELQRI 354

Query: 361 EK 362
            K
Sbjct: 355 RK 356


>gi|121611662|ref|YP_999469.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121556302|gb|ABM60451.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 581

 Score =  166 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 151/398 (37%), Positives = 239/398 (60%), Gaps = 8/398 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+P ++ AV + GY  PTPIQ + IP VL  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MTFDELNLAPAILKAVHETGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPIL 60

Query: 61  TILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L +  A          R L+L PTRELAAQV ++  +YGK   +   ++ GG+    Q
Sbjct: 61  HRLSQNPAAKNKFGGKGIRALVLTPTRELAAQVEESVREYGKYLAIDSTVVFGGVGMAPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L+RG D+L+ TPGR+LD   +G + + ++++LV+DEADRMLDMGFI  ++ + +LVP
Sbjct: 121 IERLQRGVDILVATPGRLLDLQQQGFVDLASVQVLVLDEADRMLDMGFIQDVKKVLALVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +D++++++ + L+NP+ I+V   +ST + I            K+    
Sbjct: 181 GDKQSLLFSATFSDDIRELANSLLKNPQSIQVTPRNSTVQRIAQVIHPVGRGKKKQV--- 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            + +  Q      ++F   K    ++   L K G +  A+HGN  Q +R + L++FK G 
Sbjct: 238 LRHIIEQHDWSQVLVFTRTKFGANSVAEFLTKNGVNAMALHGNKSQSARTQALADFKNGD 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ +VA+D+AARG+DI ++ HV N+++PN  E+Y+HRIGRTGRAG  G+A +LV  ++  
Sbjct: 298 IRALVATDIAARGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGATGQAVSLVCMDEEG 357

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
            +  IE+  ++++     +     P  +   IA     
Sbjct: 358 FMMDIERFTQQQIPVQPIEGFGPEPGEKAEPIAMGRQT 395


>gi|228936735|ref|ZP_04099526.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228822944|gb|EEM68785.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 481

 Score =  166 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 130/369 (35%), Positives = 219/369 (59%), Gaps = 6/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  LS ++V A+   GY  PT +Q + IP+ L++ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFTNYALSKEIVRALTGLGYENPTEVQGEVIPVALKKRDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++K+S  ++  P  IE+     T + IEH     +    ++   L + + +
Sbjct: 182 LFSATLPEDVEKLSRTYMDLPTYIEIKAAGITTDKIEH---TLFETREEEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L +  +    IHG + Q  R +++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVFRQLNRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNKGKAITFITPYEDRFLEEIE 358

Query: 362 KLIEKKVDW 370
             I  ++  
Sbjct: 359 SYIGFEIPK 367


>gi|183600372|ref|ZP_02961865.1| hypothetical protein PROSTU_03938 [Providencia stuartii ATCC 25827]
 gi|188020163|gb|EDU58203.1| hypothetical protein PROSTU_03938 [Providencia stuartii ATCC 25827]
          Length = 622

 Score =  166 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 140/393 (35%), Positives = 230/393 (58%), Gaps = 7/393 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGLS  ++ A+ D GY KP+PIQ + IPL++  +DV G+AQTG+GKTA+F LP+L
Sbjct: 7   ISFADLGLSASILTALNDLGYEKPSPIQKQCIPLLMDGNDVLGMAQTGSGKTAAFSLPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++     ++ P+ L+L PTRELA QVA+    + K+ +    + +  G  ++ Q + L
Sbjct: 67  HNIDP---DLKAPQILVLAPTRELAVQVAEAMGDFSKHMSRVNVVALYGGQRYDVQLRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  V++ TPGR+LDH  RG L ++ ++ LV+DEAD ML MGFI  ++NI S +P   Q
Sbjct: 124 RQGPQVVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++++  F++ PK I +    +T   I   +   Y     +        
Sbjct: 184 TALFSATMPEPIRRITRRFMKEPKEIRIQASITTRPDIAQSYWTVYGMRKNEA---LVRF 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + ++
Sbjct: 241 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 301 IATDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           +E+ ++  +  +    S L     +   A+   
Sbjct: 361 VERTMKLTIPEVELPDSQLLSERRQAKFAEKIQ 393


>gi|149244712|ref|XP_001526899.1| eukaryotic initiation factor 4A-12 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152032453|sp|A5DWJ1|FAL1_LODEL RecName: Full=ATP-dependent RNA helicase FAL1
 gi|146449293|gb|EDK43549.1| eukaryotic initiation factor 4A-12 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 399

 Score =  166 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P+++  +   G+  P+ IQ + I  ++   D    AQ+GTGKTA+F + ML 
Sbjct: 27  TFESMRLKPELLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLE 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+    + +  + L+L PTRELA Q+ +  +  G   N+     IGG       K+L++
Sbjct: 87  VLDS---KSKECQALVLSPTRELATQIQNVIKHLGDYMNIQTYACIGGKNVGTDIKRLQQ 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+LD   R  L   +I++L++DEAD +   GF   I  I   +P   Q +
Sbjct: 144 GQQIVSGTPGRVLDVIKRRNLSTRHIKMLILDEADELFTKGFKEQIYEIYKHLPPGVQVV 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+T E+ +++  F  +P +I V     +   I+  ++    +  K   L       
Sbjct: 204 VVSATLTHEVLEMTGKFTTDPVKILVKREEVSLSGIKQYYIQCEKEDWKFDTLCDL--YD 261

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K  V  L   + KQ F+V A+HG++ Q  R  I+++F+ G  +++++
Sbjct: 262 NLTITQAVIFCNTKIKVNWLTDQMRKQNFTVVAMHGDMKQEERDAIMNDFRSGNSRVLIS 321

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  +  V N+D+P   ENYIHRIGR+GR GR G A  L+ K D   + A+E
Sbjct: 322 TDVWARGIDVQQISLVINYDLPLDKENYIHRIGRSGRFGRKGTAINLLTKSDTIELKALE 381

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    K+  +  +++ +
Sbjct: 382 KYYSTKIKEMPSNVNDV 398


>gi|66363178|ref|XP_628555.1| eIF4A-1; eukaryotic translation initiation factor 4A-1; RNA SFII
           helicase [Cryptosporidium parvum Iowa II]
 gi|46229820|gb|EAK90638.1| eIF4A-1; eukaryotic translation initiation factor 4A-1; RNA SFII
           helicase [Cryptosporidium parvum Iowa II]
          Length = 396

 Score =  166 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 193/377 (51%), Gaps = 4/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++GL   ++  +   G+  P+ IQ + I  ++Q  D    +Q+GTGKT  F +  L 
Sbjct: 23  TFEEMGLKDNLLRGIYSYGFEFPSAIQRRAIVPIIQGRDTIIQSQSGTGKTCVFSVGALE 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I  K +  V  P  LIL PTRELA Q        G   ++     IGG   +   K L  
Sbjct: 83  ICSKSKENV--PMVLILSPTRELAEQSEKVCTSIGDYLDIRAHSCIGGKKLKDDIKALNS 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+L    +G L    I++L+IDEAD M D GF   + +I   +P   QT+
Sbjct: 141 GVSIISGTPGRVLQMIEQGYLSTKKIKLLIIDEADEMFDYGFKTQVYDIYKYLPPRIQTV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+ D++  +++ F++NP +I    P       +        +  K        L  
Sbjct: 201 LVSATLPDDILVMAQKFMRNPLQIL--VPKEEVSLDKIRQYHVQVEEEKWKFETLCDLYD 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   IIFCN K  V  L   + +  F+V  +HG++ Q +R +IL  F+EG  ++++ 
Sbjct: 259 TLTVTQSIIFCNTKNKVEWLSKKMMENHFTVSFVHGDLPQVTREEILREFREGKTRVLIT 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+D+  V  V N+D+P   E YIHRIGR+GR GR G A  L+ KED   +  +E
Sbjct: 319 TDLWGRGIDVQQVNLVVNYDLPINKELYIHRIGRSGRFGRSGIAINLITKEDESMLSLLE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    K+  L G++ +L
Sbjct: 379 RFYSIKISKLPGNVKNL 395


>gi|261364093|ref|ZP_05976976.1| ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC 25996]
 gi|288567659|gb|EFC89219.1| ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC 25996]
          Length = 471

 Score =  166 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 156/437 (35%), Positives = 251/437 (57%), Gaps = 14/437 (3%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ FA LGL  ++V A+ + GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP 
Sbjct: 1   MNPFASLGLGSELVSALTEQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 60

Query: 60  LTILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           L  L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+  + 
Sbjct: 61  LERLKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDK 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++
Sbjct: 121 QTADLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQML 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQTLLFSAT    ++K++++F+  P+ +EV   ++T+  +E   +A  A   +    
Sbjct: 181 PKQRQTLLFSATFAPPIRKLAKDFMNAPEIVEVAAQNTTSANVEQHIIAVDALKKRNL-- 238

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             + L     M   I+FC  K++V  +   L ++  +  +IHG+  Q+SR++ L+ FKEG
Sbjct: 239 -LERLIVDLQMNQVIVFCKTKQSVDQVTRDLVRRNLAAQSIHGDKSQQSRLETLNAFKEG 297

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           +++++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ K + 
Sbjct: 298 SLRVLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQ 357

Query: 355 KHIDAIEKLIE-----KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           K  +AI++L       ++++         +   +     QH   R       +S   +R 
Sbjct: 358 KMFEAIKELTGNDLAVERIEGFEPQWWGTDADGDAATDTQHAPTRSRGSDRNRSERNNRS 417

Query: 410 KKNYSSQKSHIPLKESE 426
           ++N  ++++    K  +
Sbjct: 418 ERNERNERNDRGDKSPK 434


>gi|307133003|ref|YP_003885019.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
 gi|306530532|gb|ADN00463.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
          Length = 428

 Score =  166 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 136/418 (32%), Positives = 211/418 (50%), Gaps = 8/418 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P+V+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPQVIEALENKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +   PR LI+ PTRELA Q+  + E   K   L + L  GG  ++ Q K
Sbjct: 70  YLLTHPAPAERQTNQPRALIMAPTRELAVQIHTDAEALAKATGLRLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + M  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLEDGVDILIGTTGRLIDYTKQNHVNMGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G + 
Sbjct: 249 TLIEEEWPDRCIIFANTKHRCEDIWGHLASDGHRVGLLTGDVAQKKRLRILEDFTQGNLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGCSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            AIE  I  ++        +L    P  +++   +     +    P++S      +K 
Sbjct: 369 PAIEDYIGHRIPVSKYSSEALLTELPEPKRLSRPRSAGGPRRPGAPRRSGAPRNNRKR 426


>gi|224031067|gb|ACN34609.1| unknown [Zea mays]
          Length = 414

 Score =  166 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 196/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 42  SFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G       + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 102 QLDYGLVE---CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILGS 158

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 159 GVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKIQVG 218

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 219 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDL--YE 276

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 277 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  I+
Sbjct: 337 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 396

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     ++ L  +++ L
Sbjct: 397 KFYNVLIEELPANVADL 413


>gi|90413445|ref|ZP_01221437.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90325533|gb|EAS42010.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 626

 Score =  166 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 134/372 (36%), Positives = 217/372 (58%), Gaps = 6/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L L+  ++ A+   G+V PTPIQ  +IPL+L   D  G AQTGTGKTA+F LP+L 
Sbjct: 7   EFRQLDLADTLLSALDSMGFVSPTPIQAASIPLLLTGVDALGKAQTGTGKTAAFSLPVLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKLE 120
            ++  + +   P+ +++ PTRELA QVA   +  G+N      L I G      Q + L+
Sbjct: 67  KVDLSQHK---PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRALK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ D  +R +L ++ +   V+DEAD ML MGF+  +  I    P + Q 
Sbjct: 124 NGAHIVVGTPGRVKDLISRDRLHLDEVSTFVLDEADEMLKMGFVDDVTWIMEQAPASAQR 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++++ + FL++P+RI+V   + T   +   F         +     ++L+
Sbjct: 184 VLFSATMPPIVKQIVDRFLRSPERIDVAGENRTVSQVSQQFWIVKGVEKDEAM--IRMLE 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++ +   I+F   +++   L   L  +G    A+HG+I Q  R + + + K G I ++V
Sbjct: 242 TEENIDASIVFVRTRQDTERLADWLSSRGCKAAALHGDIPQSLRERTVDHIKRGVIDVLV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD+  + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  I
Sbjct: 302 ATDVVARGLDVQRITHVFNYDIPFDVESYIHRIGRTGRAGRSGKAILLVRTNQIRMLRTI 361

Query: 361 EKLIEKKVDWLN 372
           E++ + +++ + 
Sbjct: 362 ERVTKSRMEEIQ 373


>gi|327489488|gb|EGF21281.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1058]
          Length = 523

 Score =  166 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 147/373 (39%), Positives = 226/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ KTIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEKTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQA---LIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++                  
Sbjct: 178 LLFSATMPDAIKRIGIKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|326791603|ref|YP_004309424.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
 gi|326542367|gb|ADZ84226.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
           5427]
          Length = 477

 Score =  166 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 154/454 (33%), Positives = 243/454 (53%), Gaps = 30/454 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL   ++ A    G+ KPTP+Q + IP VL++ D+   +QTG+GKTA+F +P+ 
Sbjct: 1   MSFKNYGLEKSLLKAATLLGFNKPTPVQERVIPEVLRKQDLIVQSQTGSGKTAAFAIPIC 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +   P+ L+L PTRELA QV ++F + G+   +    L G  PFE Q K+L 
Sbjct: 61  QEVIWEENK---PQALVLTPTRELAIQVKEDFFQIGRFKRIKAVGLYGKAPFEVQQKELS 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V++ TPGR+LDH  RG L  ++I  LVIDEAD ML MGFI  +++I + +P  R T
Sbjct: 118 QKTHVVVGTPGRVLDHLERGTLEASHISYLVIDEADEMLRMGFIDQVESIIAALPLNRVT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +Q++ E +L+ PK I + T         +        + +    + + + 
Sbjct: 178 LLFSATMAPHIQQLCEKYLRTPKTIHITTDL---SKPNNIEEIGIETHEQTKLAVLEAVT 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  ++ IIFCN+K+ V  +   L    + V  IHG+++Q+ R  ++ +F++G  + +V
Sbjct: 235 IVENPESCIIFCNRKERVEMVWKRLNDLNYGVGKIHGDMEQKQRFAVMEDFRKGRFRYLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + HV NFDVP +AENY+HR+GRTGRAGR GK F  +  ED +++  I
Sbjct: 295 ATDVAARGIDIDHITHVINFDVPEQAENYVHRMGRTGRAGRSGKTFIFIQPEDKRNLAVI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E    +K+                        A +   I      F+ + K     K   
Sbjct: 355 ESYTMRKIP--------------------MRTAYREEEIASAKKAFEEKMKQPLQFKETK 394

Query: 421 PLKESEKISKLQ----QDIQENDADSLGFRGNMP 450
               +++I KL     +  +    D +G   ++P
Sbjct: 395 GEVLNQEIMKLHINAGKKTKMRPVDIVGTLCHLP 428


>gi|282848965|ref|ZP_06258354.1| toxin-antitoxin system toxin component, PIN family [Veillonella
           parvula ATCC 17745]
 gi|282581240|gb|EFB86634.1| toxin-antitoxin system toxin component, PIN family [Veillonella
           parvula ATCC 17745]
          Length = 432

 Score =  166 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 152/447 (34%), Positives = 236/447 (52%), Gaps = 19/447 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+  +++ A+   G  +PTPIQ ++IP+V + +DV   AQTGTGKT +F+LP+L 
Sbjct: 3   SFKSLGVCDELIIALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPILQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +      V   + LI+ PTREL  Q++D  ++ G   N+ +  LIGG   EAQ ++L R
Sbjct: 63  RVHT---DVHQEQVLIIAPTRELIKQISDEAKELGSILNVDILPLIGGKTIEAQLQQLGR 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+LDH  RG L ++ I  +V+DEAD+ML MGF+P I+N+ S     RQ L
Sbjct: 120 RPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLISQTDANRQLL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ D+++ +++ ++  P  +       T E+I+        +           +  
Sbjct: 180 LFSATIPDKIRNLAKAYMSKPISVTAEGKHITLESIDQRVYMMNPEEK---TQRLIKMIE 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D     I+FCN+++  + L + L   G ++  +HG++ Q  R +IL +F +   Q++VA
Sbjct: 237 DDNPFLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI  + HV+N+DVP+  + YIHRIGRTGRAG  G A T    +D   +  IE
Sbjct: 297 TDIAARGIDIEGITHVYNYDVPHDVDYYIHRIGRTGRAGNSGIAVTFATPQDEAWLRRIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           + I+  +     D            I    +A    P   KS    +    Y S K+   
Sbjct: 357 RAIQATLTKYTKDGQ----------IKTKGNA-STAPKRTKSASKPKVTSTYQSTKAKAH 405

Query: 422 LKESEKISKLQQDIQENDADSLGFRGN 448
                K S  +Q  +       G RG 
Sbjct: 406 KARGHKGSNTRQ--RRASTSQTGRRGK 430


>gi|325663268|ref|ZP_08151718.1| hypothetical protein HMPREF0490_02459 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470722|gb|EGC73952.1| hypothetical protein HMPREF0490_02459 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 529

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 135/369 (36%), Positives = 214/369 (57%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LG+ P++  AV   G+ + +PIQ K IP+++   D+ G AQTGTGKTA+F +PML
Sbjct: 4   LRFEELGICPEIQKAVKHMGFEEASPIQSKAIPVMMTGKDIIGQAQTGTGKTAAFGIPML 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++    +++     +L PTRELA QVA+      K  +    L I  G     Q + L
Sbjct: 64  EKIDPKNKKLQGI---VLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  ++I TPGR++DH  R  + M  +  +++DEAD ML+MGF   I+ I   VP  RQ
Sbjct: 121 KSGTQLIIGTPGRVMDHMRRKTIKMEQVHTVILDEADEMLNMGFREDIETILEGVPEERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + ++++ F +N + I+V     T   IE  +        K    +   L
Sbjct: 181 TVLFSATMPKAIMEITKKFQKNAEVIKVTKKELTVPNIEQFYYEVKP---KNKEEVLTRL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T K  +IFCN KK V  L  +L  +G+    +HG++ Q  R +++  F+ G   ++
Sbjct: 238 LDIYTPKLSVIFCNTKKQVDLLVTALLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTDIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V  VFN+D+P   E Y+HRIGRTGRAGR G++F+ V+ +++  +  
Sbjct: 298 VATDVAARGIDVDEVEAVFNYDLPQDEEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKLKE 357

Query: 360 IEKLIEKKV 368
           I++  + K+
Sbjct: 358 IQRYCKTKI 366


>gi|320583325|gb|EFW97540.1| ATP-dependent rRNA helicase, putative [Pichia angusta DL-1]
          Length = 470

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 148/411 (36%), Positives = 230/411 (55%), Gaps = 10/411 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL P ++ A+    +  PTPIQ +++P  LQ  D+ GIAQTG+GKTA+F +P+L  
Sbjct: 69  FKELGLQPDILDAIEKLNFSTPTPIQAQSLPHSLQGRDIIGIAQTGSGKTAAFAIPILQA 128

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L + +         +L PTRELA Q+ + F+  G N  L  + ++GG+    Q K+L R 
Sbjct: 129 LWEAQTPYF---ACVLAPTRELAYQIRETFDALGVNMGLRCSTIVGGMDMMEQAKELMRK 185

Query: 123 ADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             V++ TPGR++DH  N     +  ++ LV+DEADR+LDM F P +  I +++P  R+T 
Sbjct: 186 PHVIVATPGRLMDHLENTKGFSLKALKYLVMDEADRLLDMEFGPVLDRILNIIPRERKTY 245

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+T +++K+    L +P +I VN   ST +T+                     L +
Sbjct: 246 LFSATLTSKVEKLQRASLIDPVKIAVNDKYSTVDTL---IQTLMVVPDGYKNTYLIYLLN 302

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   K+ I+F     +   +       GFS   +HG + Q  R+  L+ FK G  Q++VA
Sbjct: 303 EYVGKSVIVFARTCAHAQKVALLARILGFSAIPLHGQLTQAQRLGALNKFKSGDKQILVA 362

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP V  V N+D+P  ++ YIHR+GRT RAGR GK+ +LV + D++ I  IE
Sbjct: 363 TDVAARGLDIPSVDLVVNYDIPTDSKAYIHRVGRTARAGRSGKSVSLVTQYDLELILRIE 422

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           K+I+ K   L  ++ + N  L   D      A+  + + +  +    RKK+
Sbjct: 423 KVIDMK---LPKEVPNKNEILALHDSVDRATAQAVSKVKEFHSKRKFRKKD 470


>gi|168015786|ref|XP_001760431.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688445|gb|EDQ74822.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 675

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 130/379 (34%), Positives = 210/379 (55%), Gaps = 2/379 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  +GL P ++  +  AG+  PTPIQ ++ P+ +Q  D+  IA+TG+GKT  +++P  
Sbjct: 155 LSFEAVGLPPDMLREIQAAGFKSPTPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPAF 214

Query: 61  TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             LE+ R   R  P  L++ PTRELA Q+ +   K+G++  +T   + GG P   Q + +
Sbjct: 215 LHLERHRNNSRLGPSVLVIAPTRELATQIQEECVKFGRSSRITSTCVYGGAPKGPQLRDI 274

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGAD++I TPGR+ D     K+ +  +  LV+DEADRMLDMGF P I+ I + +   RQ
Sbjct: 275 ERGADIVIATPGRLNDFLEVKKISLRQVSYLVLDEADRMLDMGFEPQIRKIVNEILSRRQ 334

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+++AT   E++K++ + L NP ++ +      +               +      + +
Sbjct: 335 TLMYTATWPKEVRKIAGDLLINPVQVNIGNTDELSANKSITQHVEVVVPYE-KQRRLEQI 393

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + II     K + ++      + F   AIHG+  Q  R  +LS F+ G   ++
Sbjct: 394 LRSQEPGSKIIVFCSTKRMCDMLSRNLGRDFGAAAIHGDKSQSERDFVLSQFRTGRTPIL 453

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G A+T  +++D K+   
Sbjct: 454 VATDVAARGLDIKDIRFVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFSEQDGKYAKE 513

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E     +  +L  +
Sbjct: 514 LIKVLEGANQKVPQELKDI 532


>gi|121593545|ref|YP_985441.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
           JS42]
 gi|120605625|gb|ABM41365.1| DEAD/DEAH box helicase domain protein [Acidovorax sp. JS42]
          Length = 484

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 179/470 (38%), Positives = 254/470 (54%), Gaps = 24/470 (5%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
           + L L+  +  AV + GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L  L
Sbjct: 6   STLALAEPLKRAVAEMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRL 65

Query: 64  EKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            K       P        +L PTRELA QVA     Y K   L   ++ GG+  + Q  +
Sbjct: 66  LKHENSSASPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQTIE 125

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P  R
Sbjct: 126 LKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQR 185

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            TLLFSAT + E+++++ ++LQ+P  IEV  P+ TA T+E  F A      ++     + 
Sbjct: 186 TTLLFSATFSPEIKRLAGSYLQDPITIEVARPNETASTVEQRFFAVDGDDKRRA---IRH 242

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + ++  +K   IF N K     L  SLE+ G    A+HG+  Q  R+K L  FK G + L
Sbjct: 243 VLNERGLKQAFIFVNSKLGCARLARSLERDGLKTAALHGDKSQDERLKALEAFKSGEVDL 302

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V +D+AARGLDI DV  VFN+DVP  AE+Y+HRIGRTGRAG  G A TL A  D + + 
Sbjct: 303 LVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLAASSDTRLVA 362

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD--RRKKNYSSQ 416
            IEKLI+KK++    +L    P        ++N  R+ +       G     R +  S+ 
Sbjct: 363 DIEKLIKKKIELEPLELQEDRP------RGRYNDGRRASGGDDSGEGAPAAPRSRERSAY 416

Query: 417 KSHIPLKESEKISKLQQDIQ--------ENDADSLGFRGNMPAFMLPKNR 458
           +S           K  +           E    +   RG + A + PK +
Sbjct: 417 RSAPAASRDPFFDKPYEASTSAGASASWEVAPKASPARGGISANIKPKRK 466


>gi|19113315|ref|NP_596523.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces pombe 972h-]
 gi|10720389|sp|P24782|DBP2_SCHPO RecName: Full=ATP-dependent RNA helicase dbp2; AltName:
           Full=p68-like protein
 gi|173419|gb|AAA35319.1| p68 RNA helicase [Schizosaccharomyces pombe]
 gi|3810840|emb|CAA21801.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces pombe]
          Length = 550

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 126/380 (33%), Positives = 202/380 (53%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+  PTPIQ +  P+ +   D+ GI+ TG+GKT S+ LP + 
Sbjct: 123 TFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIV 182

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      +    P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 183 HINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDL 242

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG ++ I TPGR+LD  +  K  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 243 IRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 302

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++FSAT   E+Q+++ ++L +  ++ V +    A       V       K+  L + + 
Sbjct: 303 TVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIE 362

Query: 240 QSQDTMKNGIIFCNQKKNV-VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +      N ++     K V  ++   L + G+   AIHG+  Q  R  +L+ F+ G   +
Sbjct: 363 EVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPI 422

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+  + HVFN+D P   E+Y+HRIGRTGRAG  G A+T    ++ K   
Sbjct: 423 MVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQAR 482

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    ++  L  +
Sbjct: 483 ELVSILSEAKQDIDPKLEEM 502


>gi|229164405|ref|ZP_04292334.1| ATP-dependent RNA helicase dbpA [Bacillus cereus R309803]
 gi|228619055|gb|EEK75952.1| ATP-dependent RNA helicase dbpA [Bacillus cereus R309803]
          Length = 481

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 130/369 (35%), Positives = 223/369 (60%), Gaps = 6/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++  L+ ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   NFSNYALNKEIVRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++K+S  ++ +P  IE+     T + IEH     +    ++   L + + +
Sbjct: 182 LFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEH---TLFEVGEEEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG+ GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGKKGKAITFITPYENRFLEEIE 358

Query: 362 KLIEKKVDW 370
             I   +  
Sbjct: 359 TYIGFAIPK 367


>gi|258516257|ref|YP_003192479.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779962|gb|ACV63856.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 539

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 155/391 (39%), Positives = 230/391 (58%), Gaps = 10/391 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L L+ ++V A+++ G+ +PTPIQ KTIP+ L+  D+ G AQTGTGKTA+F +P+L 
Sbjct: 13  KFGELTLNSRIVQALVNMGFEEPTPIQQKTIPISLEGKDIIGQAQTGTGKTAAFAIPVLE 72

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            ++    R    + LI+ PTRELA QVA+     GK   +    + GG   + Q K   +
Sbjct: 73  KIDS---RRNGVQALIITPTRELAIQVAEEISNIGKYCRIRALPIYGGQSIDRQIKALKQ 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++I TPGR+LDH  RG L +  +  +V+DEAD MLDMGFI  I+ I +  P TRQT
Sbjct: 130 QRVQIVIGTPGRLLDHLRRGTLRLEQVATVVLDEADEMLDMGFIEDIEAILNQTPTTRQT 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT+ +E+ ++S  +L +P+ I V+  + T   IE      Y             L 
Sbjct: 190 FLFSATIPEEILRLSRKYLNSPEFITVSRNNLTVPLIEQ---VYYETRESTKLDALARLL 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   IIFC  K+ V  L  SL+ +G+    +HG++ Q  R  ++  FK G ++ +V
Sbjct: 247 DALDISLAIIFCRTKRGVDELVASLQVRGYQAAGLHGDLSQYQRNHVMRQFKAGQVEFLV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI +V HV NFDVP   E Y+HRIGRTGRAG+ G A +LV+  D + +  I
Sbjct: 307 ATDVAARGLDIENVSHVINFDVPQDPEFYVHRIGRTGRAGKTGMAISLVSPRDFRQLRLI 366

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQ 389
           EK+ + +V  + L G L+ L    +++  +Q
Sbjct: 367 EKITKSRVKREHLPG-LADLTERRKEMIKSQ 396


>gi|308178183|ref|YP_003917589.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
 gi|307745646|emb|CBT76618.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
           Re117]
          Length = 642

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 160/467 (34%), Positives = 246/467 (52%), Gaps = 26/467 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL  +V+ ++ D GY KP+PIQ  TIPL+L+  DV G+AQTGTGKTA+F LP L+ 
Sbjct: 22  FSELGLDARVLASLADLGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFALPALSR 81

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKK 118
           +          + P+ L+L PTRELA QVA+ F  Y K       L +  G P+  Q   
Sbjct: 82  MAELADTNGPAKTPQILVLAPTRELALQVAEAFTSYAKYLPNFTVLPVYGGSPYGPQLNG 141

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RGA V++ TPGR++DH N+G L ++N++ +V+DEAD ML MGF   +  I    P  +
Sbjct: 142 LRRGAQVVVGTPGRVIDHINKGSLDLSNLQYVVLDEADEMLRMGFAEEVDKILEATPEDK 201

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q  LFSATM   +++++  +L+NP+ + V +  ST   I   ++     +          
Sbjct: 202 QVALFSATMPRTIRRIASEYLRNPQEVAVKSKQSTGTNITQRYLQVMGAHKLDAMTRILE 261

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            ++ + +   +      +++ +   +   +GF+  AI+G+I Q+ R + + N + G I +
Sbjct: 262 SETFEGVIAFVRTKMATEDLADKLKA---RGFTAAAINGDIPQQQRERTIENLRSGKIDI 318

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  + HV NFD+P+  E+Y+HRIGRTGRAGR G A   +   +   + 
Sbjct: 319 LVATDVAARGLDVERISHVVNFDIPHDTESYVHRIGRTGRAGRKGDAILFMTPREKYLLR 378

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           AIEK   + V  +   L SL+                N+   QK T  DR  K  S Q  
Sbjct: 379 AIEKATRQPVTQMQ--LPSLDSV--------------NDRRIQKFT--DRIDKTISGQDL 420

Query: 419 HIPLKESEKISKLQQDI-QENDADSLGFRGNMPAFMLPKNRGKLNDK 464
               +  EK +   +D+ Q   A +L         +L         K
Sbjct: 421 TTFREIVEKFASEHEDLDQLEIAAALALMAQGGRPLLMTEPVMSPSK 467


>gi|225025644|ref|ZP_03714836.1| hypothetical protein EIKCOROL_02546 [Eikenella corrodens ATCC
           23834]
 gi|224941594|gb|EEG22803.1| hypothetical protein EIKCOROL_02546 [Eikenella corrodens ATCC
           23834]
          Length = 466

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 154/431 (35%), Positives = 249/431 (57%), Gaps = 27/431 (6%)

Query: 1   MD--FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           M+  F +LGLS ++  A+ D GY +PT IQ   IP VL  HD+   AQTGTGKTA+F+LP
Sbjct: 1   MNNPFTNLGLSAEITAALADQGYEQPTAIQTAAIPKVLAGHDLLAAAQTGTGKTAAFMLP 60

Query: 59  MLTILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
            L  L +       P        +L PTRELA Q+  N   Y KN  L   +L GG+  +
Sbjct: 61  SLERLRRYATTSTSPAMHPVRMLVLTPTRELADQIDQNTAAYIKNLPLRHTVLFGGMNMD 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  G ++++ T GR+LDH  +  + ++ +EI+V+DEADRMLDMGFI  I+ I  L
Sbjct: 121 KQTADLRAGCEIVVATVGRLLDHVQQKNIRLDKVEIVVLDEADRMLDMGFIDDIRRIMQL 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQTLLFSAT +  ++K++++F+  P++++    ++ + ++E   +A      +   
Sbjct: 181 LPKQRQTLLFSATFSPPIRKLAQDFMNRPEQVQTAPQNTASASVEQHIIAIDTAQKRNL- 239

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
              + L     +   I+FC  K++V  +   L+++G SV  IHG+  Q++R++ L+ FK 
Sbjct: 240 --LERLIVDLHINQVIVFCKTKQSVDQVARDLKRRGLSVAPIHGDKSQQTRLETLNAFKA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++++VA+D+AARGLDI ++  V N+++P +AE+Y+HRIGRTGRAG  G A +L+ +++
Sbjct: 298 GELRVLVATDVAARGLDIAELPFVINYEMPTQAEDYVHRIGRTGRAGAEGVAISLMDEDE 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI-----AQHNHARKNNPIPQKSTGFDR 408
            K  +AI++LI K++            P+E+I+       QH            S     
Sbjct: 358 QKMFEAIKELIGKEL------------PVERIEGFEPRWWQHQQEGSRPAAEHSSRDTRE 405

Query: 409 RKKNYSSQKSH 419
            ++  +S++  
Sbjct: 406 PREARNSRRGR 416


>gi|82779039|ref|YP_405388.1| ATP-dependent RNA helicase RhlB [Shigella dysenteriae Sd197]
 gi|309784492|ref|ZP_07679130.1| ATP-dependent RNA helicase rhlB [Shigella dysenteriae 1617]
 gi|123561185|sp|Q329V8|RHLB_SHIDS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|81243187|gb|ABB63897.1| putative ATP-dependent RNA helicase [Shigella dysenteriae Sd197]
 gi|308927598|gb|EFP73067.1| ATP-dependent RNA helicase rhlB [Shigella dysenteriae 1617]
          Length = 421

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 139/413 (33%), Positives = 208/413 (50%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+  M  
Sbjct: 10  KFSDFSLHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSMFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRKVNKPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGAPRNRRRSG 421


>gi|195376889|ref|XP_002047225.1| GJ13322 [Drosophila virilis]
 gi|194154383|gb|EDW69567.1| GJ13322 [Drosophila virilis]
          Length = 797

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 130/400 (32%), Positives = 213/400 (53%), Gaps = 3/400 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F   G   +++ +V  A Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ P+  
Sbjct: 280 SFGHFGFDEQLLKSVRKAEYTQPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFIWPLLT 339

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + ++       P  LIL PTREL+ Q+ +  +K+GK YN+ V    GG     Q+K L
Sbjct: 340 HLMDQRELRPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSKAL 399

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G ++++ TPGR++D        +  +  LV+DEADRM  MGF P +++I + V   RQ
Sbjct: 400 EQGCEIVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQ 459

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    +++++ + L +P RI     +   + I            K   LL  L+
Sbjct: 460 TLLFSATFKKRIERLARDILTDPVRIVQGDLNEANQDITQHVYVFPNPLQKWNWLLCHLV 519

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        ++F  +K +   + ++L  +  +   +HG++DQ  R K+++ FK     ++
Sbjct: 520 KFLSEG-AVLVFVTKKADAETVANNLIVKEHNCLLLHGDMDQADRNKVITQFKRKECDIL 578

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + +V N+D+    + + HRIGRTGRAG  G A+TLV  +D +    
Sbjct: 579 VATDVAARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAYTLVTDKDKEFAGH 638

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           + + +E     +  DL  L         ++    +   P 
Sbjct: 639 LVRNLEGADQTVPDDLMELAMKSSWFRSSRFKQGKGRKPA 678


>gi|113461438|ref|YP_719507.1| ATP-dependent RNA helicase SrmB [Haemophilus somnus 129PT]
 gi|112823481|gb|ABI25570.1| ATP-dependent RNA helicase [Haemophilus somnus 129PT]
          Length = 441

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 141/417 (33%), Positives = 219/417 (52%), Gaps = 17/417 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F D  L+P+++ A+   GY +PT IQ+  IP +++  DV G A TGTGKTA+F+LP + 
Sbjct: 5   QFEDFDLAPQLLKALAQKGYSRPTVIQLDAIPAIMEARDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR L+L PTRELA QVA+  E+  +  +L++A + GG+ ++   +   
Sbjct: 65  HLLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLSIATITGGVAYQNHGEVFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR+L +          +EIL+ DEADRML MGF  Y + I +   + RQT
Sbjct: 125 KNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQYAEEIAAETRWRRQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL  V          ++ N   S  E  +      +A  ++    L     
Sbjct: 185 LLFSATLEGEL-LVDFASRLLKDPVQFNAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +  GI+F  +++NV  L   L K+G     + G + Q  R K +   K   + ++V
Sbjct: 244 ENEQVSRGIVFVRRRENVRELSEILRKRGIRSTYLEGEMAQTQRTKAIDKLKNDVVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HR+GRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYNADTYLHRVGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           ++   +               L K  I +    R N P   +     +++KN +  K
Sbjct: 364 KRYTGE---------------LLKPRIIEGLEPRTNPPKDGEIKTVSKKQKNRAKTK 405


>gi|255534886|ref|YP_003095257.1| ATP-dependent RNA helicase RhlE [Flavobacteriaceae bacterium
           3519-10]
 gi|255341082|gb|ACU07195.1| ATP-dependent RNA helicase RhlE [Flavobacteriaceae bacterium
           3519-10]
          Length = 417

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 161/420 (38%), Positives = 242/420 (57%), Gaps = 6/420 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F DL L   +  A+ + GY +PTPIQ K IP +LQ  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MNFTDLQLIDPIAKALQEEGYTQPTPIQAKAIPSILQGRDLLGTAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R    + LIL PTRELA Q+ ++F  YG++  L   ++ GG+    Q   L+
Sbjct: 61  QNLTEKNIRNNQIKALILTPTRELAIQIEESFNAYGRHLRLRNLVVFGGVKQSGQEAALK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+LD  ++G + + N+EI V+DEADRMLDMGF+  ++ I  L+P  RQT
Sbjct: 121 KGVDILVATPGRLLDFISQGIISLKNLEIFVLDEADRMLDMGFVHDVKRIIKLLPPKRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT  DE+ K++ + L NP ++EV   S+TA+TI       Y    +    L   + 
Sbjct: 181 LFFSATFPDEISKLANSMLTNPVKVEVAPVSATADTI---KQKVYFVEKENKLELLTHIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D   + ++F   K     +   L+    S  AIHGN  Q  R   L+NFK G  +++V
Sbjct: 238 MNDISDSVLVFSRTKHGADKIARKLQSHKISAEAIHGNKSQNQRQNALNNFKSGKTRILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++ +V NF++ + +E Y+HRIGRTGRAG  G + + V   D+ ++ + 
Sbjct: 298 ATDIAARGIDIDELKYVVNFELSDVSETYVHRIGRTGRAGADGSSISFVDGLDLVNLKST 357

Query: 361 EKLIEKKVD-WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR--KKNYSSQK 417
           EKLI KK+    +    + N   EK D        +     ++S G  +   K N++  +
Sbjct: 358 EKLIGKKIPVEKDHPFHTDNLKEEKRDSNNKPFTPRPRAQGRESIGSKKPNNKSNFTRNR 417


>gi|296121514|ref|YP_003629292.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
 gi|296013854|gb|ADG67093.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
          Length = 608

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 157/409 (38%), Positives = 236/409 (57%), Gaps = 18/409 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL +SP ++ AV  +GYV PTPIQ +TIPL+++  DV G+AQTGTGKTA+F +PML 
Sbjct: 13  TFADLNISPPILSAVTASGYVNPTPIQARTIPLLIEGRDVLGMAQTGTGKTAAFAIPMLQ 72

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            ++   +  +    LIL PTRELA QVA+ FEKY  N     VA + GG  ++ Q ++L 
Sbjct: 73  AIDLSSSATQ---VLILAPTRELAMQVAEAFEKYAANLKGLRVAAIYGGQDYQLQFRQLN 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  RG L +++++ LV+DEAD ML MGF   ++ I    P  RQ 
Sbjct: 130 RGAHVIVGTPGRVMDHIRRGSLKLDSLKGLVLDEADEMLRMGFAEDVEWILEQTPSQRQI 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM D ++++++  L+NP  I +   ++TAETI   F+       +        + 
Sbjct: 190 ALFSATMPDSIRRIAQKHLKNPAEITIKRRTATAETIRQRFITVPPFQKEAV---LARIL 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +   IIF   K   V L   L  QG+   A+  ++ Q  R +I+ + K G + +++
Sbjct: 247 ETEPIDAVIIFVKTKSTTVPLAEFLASQGYRTAALSSDVPQAQRERIVEHLKSGRLDIVI 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV NFD+P+ +E+Y+HRIGRTGRAGR G     +   +   +  I
Sbjct: 307 ATDVAARGLDVQRITHVINFDLPSDSESYVHRIGRTGRAGRQGDTILFLHPRERFQLRRI 366

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           E++  + ++           P++    AQ N  R      +  T  D R
Sbjct: 367 EQVTRQPIE-----------PMQVPAAAQVNERRIERFKSKIKTALDHR 404


>gi|188581754|ref|YP_001925199.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
 gi|179345252|gb|ACB80664.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
          Length = 506

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 140/370 (37%), Positives = 222/370 (60%), Gaps = 5/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL+  V+ A+ +AGYV PTPIQ + +P  ++  D+CGIAQTGTGKTA+F LP+L 
Sbjct: 3   QFTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILH 62

Query: 62  ILEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L     R       +L   PTRELA+Q+A++F  YG++   T  ++ GG+    Q + +
Sbjct: 63  RLSLENRRAPRRGCRVLVLSPTRELASQIAESFSDYGRHLPYTNTVVFGGVNINRQERAI 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR++D  +R  L ++ +EILV+DEAD+MLD+GFI  ++ I  ++P  RQ
Sbjct: 123 APGVDILVATPGRLIDLVDRRALTLDGVEILVLDEADQMLDLGFIHALKRIVKMLPARRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +L FSATM   +  +++ +L NP ++ V   ++TAE ++   +  +    +        +
Sbjct: 183 SLFFSATMPKNIAGLADQYLTNPVQVAVTPVATTAERVDQQVIFCHTGAKQAL---LNHV 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                ++  ++F   K     +   L+K G    AIHGN  Q  R + L+ F++G+ +++
Sbjct: 240 LRDPKIERVLVFTRTKHGADRVVRGLDKAGIVGAAIHGNKSQPQRERALAAFRDGSCRVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV N+D+PN  E+Y+HRIGRT RAG  G A +    E+  ++  
Sbjct: 300 VATDIAARGIDVEGVTHVVNYDLPNVPESYVHRIGRTARAGAEGMAISFCNDEERAYLLD 359

Query: 360 IEKLIEKKVD 369
           IE+   +KV 
Sbjct: 360 IERTTRQKVP 369


>gi|313892323|ref|ZP_07825915.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
           UPII 345-E]
 gi|313119182|gb|EFR42382.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
           UPII 345-E]
          Length = 491

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 131/356 (36%), Positives = 212/356 (59%), Gaps = 6/356 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS +++ AV D G+ +P+PIQ + IP+ +Q  D+ G AQTGTGKTA+F +P+L 
Sbjct: 4   TFKELGLSEEIMKAVADMGFEEPSPIQKEAIPIAMQGKDLIGQAQTGTGKTAAFGIPILQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++        P+ ++L PTRELA Q A+      +  N+    + GG   E Q + L++
Sbjct: 64  RIDTS---KPGPQAIVLSPTRELAIQSAEEINHLAQYMNIKTIPIYGGQDIERQFRALKK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             ++++ TPGR++DH  R  + ++N++I V+DE D M+DMGFI  I+ I +  P  RQTL
Sbjct: 121 KPNIIVATPGRLMDHMKRKTIDLSNVQIAVLDEGDEMVDMGFIDDIRTIMAATPKERQTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   +++++ +FL  P+ +++   + T + I            ++       L  
Sbjct: 181 FFSATMPAPIRELANSFLNEPEIVKIKAATVTIDLI---EQEYIELPDRQKFDALCRLLD 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  I+F   K+    +  +L+K+ +S   +HG++ Q+ R  ++  FKEGTI  +VA
Sbjct: 238 MQSPELAIVFVRTKRRADEVTEALKKRAYSAEGLHGDLSQQKRDSVIRQFKEGTIDFLVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +D+AARGLDI  V HV+NFD+P   E Y+HR+GRTGRAG+ G A T V   ++  +
Sbjct: 298 TDVAARGLDISGVTHVYNFDMPQDPEIYVHRVGRTGRAGKTGLATTFVISREMGQL 353


>gi|217962948|ref|YP_002341526.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|229142204|ref|ZP_04270728.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST26]
 gi|217066069|gb|ACJ80319.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|228641222|gb|EEK97529.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST26]
          Length = 481

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 138/418 (33%), Positives = 236/418 (56%), Gaps = 15/418 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS ++V A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FFEYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  ++  P  IE+     T + IEH     +     +   L + + + 
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEH---TLFEAIEDEKLSLLKDVTTI 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 240 ENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 363 LIEKKV---------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            I  ++         + + G  +       K  I +  +A  N  I +      ++KK
Sbjct: 360 YIGFEIPKAIGPSKEEVMKGKAAFEEKIHAKPIIKKDKNADINKGIMKLYFNGGKKKK 417


>gi|77362320|ref|YP_341894.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76877231|emb|CAI89448.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 433

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 153/433 (35%), Positives = 232/433 (53%), Gaps = 7/433 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F     +P++V A+ +  Y   TPIQ   IP V +  DV   AQTGTGKTA+F LP++
Sbjct: 1   MNFKSFSFAPELVQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPII 60

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +        P  L+L PTRELA Q+A+NF+ + K+ +L V  L GG+    Q   L
Sbjct: 61  QKLFESEVSTTNAPHALVLAPTRELAEQIANNFKDFAKHTSLKVVSLFGGVNTAGQANAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D+++ TPGR+LDH   G L + +++ LV+DEADRMLDMGFI  +Q +       RQ
Sbjct: 121 KEGVDIVVATPGRLLDHIRLGNLSLASVKHLVLDEADRMLDMGFIEEMQGVIKSCADDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT    +++ +   L+ P+ + V+    T  T        Y    ++   L   L
Sbjct: 181 ILLFSATFPAAIKQFASKVLKQPEIVRVD---QTNSTASTVAHVVYPVEERRKQELLSEL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F N K+    L   L   G      HG+  Q +R + L  FKEG ++++
Sbjct: 238 IGKKNWQQVLVFVNMKETADELVTELNLDGIPAAVCHGDKSQGNRRRALREFKEGKVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+++AARG+DI  +  V N D+P  AE+Y+HRIGRTGRAG+ G+A + V++E+   +  
Sbjct: 298 VATEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGKEGQAISFVSREEENMLFE 357

Query: 360 IEKLIEKKVD--WLNGD-LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           IE LI +K+   +L G  +S+    ++KI     +  R     P      + R  N S  
Sbjct: 358 IETLIGQKIKRVYLEGYAVSNREVLIDKIGKKPAHLRRTRANKPSGQATGEARAVNRSRI 417

Query: 417 KSHIPLKESEKIS 429
                  + EK+S
Sbjct: 418 SKIRKSLKGEKLS 430


>gi|319951788|ref|YP_004163055.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM
           14237]
 gi|319420448|gb|ADV47557.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM
           14237]
          Length = 429

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 136/371 (36%), Positives = 221/371 (59%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LG++  ++ A+   GY  PTPIQ K+IP++L+  D+ G+AQTGTGKTA+F +P+L
Sbjct: 1   MTFKELGIAEPILKALTSEGYENPTPIQEKSIPILLKGKDLLGVAQTGTGKTAAFGIPIL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +    + +  R  + L++ PTRELA Q+ ++F  Y +   +   ++ GG+    Q   
Sbjct: 61  HHIYTNNSGIGKRKIKALVVTPTRELAIQIGESFTAYARFTGIKNTVIFGGVKQGKQTDA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G ++LI TPGR+LD  N+G + + ++E +V+DEAD+MLDMGFI  ++ I + +P  R
Sbjct: 121 LRQGVEILIATPGRLLDLMNQGFISLRDLEYVVLDEADQMLDMGFIHDVKKIIAKLPAKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM   + ++S+  L   +++ +    +TAE +E            K  +    
Sbjct: 181 QSLFFSATMPKTIVELSQKILGEFEQVTIKPEQATAEKVEQAIYFVPKGDKVKLLVHL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  K  ++F   K     +   L+K G +  AIHGN  Q +R   L++FK+G + +
Sbjct: 239 -IETKEAKAVLVFSRTKHGANKIVKLLDKAGINAAAIHGNKSQTARQNALNDFKDGKLTV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI D+  V N+D+PN  E Y+HRIGRTGRA   G A +   +E+  ++ 
Sbjct: 298 LVATDIAARGIDIDDLSLVVNYDLPNVPETYVHRIGRTGRANASGVALSFCDREERAYLK 357

Query: 359 AIEKLIEKKVD 369
            I+KLI++ + 
Sbjct: 358 DIQKLIKQTIP 368


>gi|302817632|ref|XP_002990491.1| hypothetical protein SELMODRAFT_131776 [Selaginella moellendorffii]
 gi|300141659|gb|EFJ08368.1| hypothetical protein SELMODRAFT_131776 [Selaginella moellendorffii]
          Length = 469

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 132/419 (31%), Positives = 220/419 (52%), Gaps = 11/419 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG++  +V A  + G   PTP+Q   +P +L+  DV G+AQTG+GKTA+F LP+L 
Sbjct: 54  SFEELGVAEWLVGACKELGMRHPTPVQRACVPQILKGKDVLGMAQTGSGKTAAFALPILQ 113

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    +     L++ PTRELA Q++D F+  G   +L  A+++GG+    Q + L  
Sbjct: 114 RLGENPYGIF---ALVMTPTRELAFQISDQFKALGAGVHLRCAVVVGGMDMTTQAQILME 170

Query: 122 GADVLICTPGRILDHFNRGKLL---MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              V+I TPGRI  H      +    +  + LV+DEAD +LD GF   +Q I   +   R
Sbjct: 171 RPHVVIATPGRIKAHIGSDPDIAAAFSKTKFLVLDEADLLLDRGFQDELQTIFDGISKQR 230

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATMT +LQ + + F       +      T E+++  ++    +           
Sbjct: 231 QTLLFSATMTGDLQALRDLFGHRAFFYQAYEGLKTVESLDQRYIFMPGKVKNVYLTYLLE 290

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               + +++ IIF ++ +    L   L++ G S  A+H    Q  R+  L+ FK G   +
Sbjct: 291 NLELEDIRSVIIFVSRCRTCHLLSLILDELGISAVALHSVKTQPQRLAALNQFKSGQATI 350

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDIP V  V N+D+P   ++Y+HR+GRT RAGR G+A +LV + D++ + 
Sbjct: 351 LIATDVASRGLDIPTVDLVVNYDIPRFTKDYVHRVGRTARAGRGGRAISLVTELDVELVH 410

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            +E  + KK++      + +   + K+       A++   +  + +G   +       K
Sbjct: 411 EVESFLGKKLEEYEVSEADVLKNITKV-----YKAKRVAIMKMEDSGIQEKMDARKKMK 464


>gi|161784286|sp|Q5ACU6|RRP3_CANAL RecName: Full=ATP-dependent rRNA helicase RRP3
          Length = 539

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 140/395 (35%), Positives = 218/395 (55%), Gaps = 14/395 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L L P ++ ++    + KPTPIQ + IP  L+  D+ G+AQTG+GKTA+F +P+L 
Sbjct: 124 TFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQ 183

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   +        L+L PTREL  Q+ D F+  G +  L  + ++GG+    Q + L R
Sbjct: 184 SLWHAQQPYF---ALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMR 240

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGRI+DH  +     + N++ LV+DEADR+LDM F P +  I  ++P  R T
Sbjct: 241 KPHVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTT 300

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT++++K+    L NP R+ V++   TA+ +    +     Y     +      
Sbjct: 301 YLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLL--- 357

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   K+ I+F     +           GF+   +HG + Q  R+  L+ FK     ++V
Sbjct: 358 NEFMGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILV 417

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V N+D+P  ++ YIHR+GRT RAGR GK+ +L+ + D++    I
Sbjct: 418 ATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRI 477

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           E ++ KK+   +       PP E +D A H H  K
Sbjct: 478 ESVLGKKLPKED------KPPKEVLD-ALHVHVDK 505


>gi|312898631|ref|ZP_07758021.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
 gi|310620550|gb|EFQ04120.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
          Length = 522

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 147/367 (40%), Positives = 225/367 (61%), Gaps = 4/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L +S  ++ A+ D G+ +PTPIQ  +IP+ L+ HD+ G AQTGTGKTA++ +P+L 
Sbjct: 8   KFKNLQISDVIINALNDMGFEEPTPIQEGSIPVALEGHDMIGQAQTGTGKTAAYGIPVLE 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +    A  +  +++IL PTRELA QVA+      +   +    + GG   E Q ++L +
Sbjct: 68  KILAAGA-PKELQSVILSPTRELAIQVAEEINHLAQYTPVQALPIYGGQDMERQLRRLRK 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++DH  RG + +++I  +V+DEAD ML+MGFI  I  I S  P TRQTL
Sbjct: 127 SPQIIVATPGRLIDHMKRGTVKLSSISTIVLDEADEMLNMGFIDDINLIMSATPETRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +QK++E FL++P+ I +     T + +E    +      ++   +   L  
Sbjct: 187 LFSATMPAPIQKLAETFLKDPQIIRMKAKEVTIDLVEQ---SYIEVADRQKFDVLCRLLD 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIF   K+ V  L   L+K+G+S   IHG++ Q  R  ++  F+E TI ++VA
Sbjct: 244 LQEPDLAIIFVRTKRRVDELSEGLKKRGYSAEGIHGDLTQAKRDSVIRQFREKTIDILVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+N+D+P   E+Y+HR+GRTGRAG+ G+A T V   +I H+  IE
Sbjct: 304 TDVAARGLDISGVTHVYNYDLPQDPESYVHRVGRTGRAGQSGEATTFVIPREIDHLRTIE 363

Query: 362 KLIEKKV 368
           KLI+ ++
Sbjct: 364 KLIKHRI 370


>gi|271502412|ref|YP_003335438.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270345967|gb|ACZ78732.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
          Length = 428

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 137/418 (32%), Positives = 212/418 (50%), Gaps = 8/418 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P+V+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPQVIEALENKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +   PR LI+ PTRELA Q+  + E   K   L + L  GG  ++ Q K
Sbjct: 70  YLLTHPAPAERQTNQPRALIMAPTRELAVQIHADAEALAKATGLRLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + M  I+++V+DEADRM D+GFI  I+ +   +P T
Sbjct: 130 VLEDGVDILIGTTGRLIDYTKQNHIHMGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPT 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F +G++ 
Sbjct: 249 TLIEEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGSLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGASGVSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLN---PPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            AIE  I   +        +L    P  +++   + +   +    P++S      +K 
Sbjct: 369 PAIEDYIGHHIPVSKYSSEALMTGLPEPKRLSRPRTSGGPRRPGAPRRSGAPRNNRKR 426


>gi|254473978|ref|ZP_05087371.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
 gi|211956867|gb|EEA92074.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
          Length = 483

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 160/400 (40%), Positives = 240/400 (60%), Gaps = 12/400 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F + GL+  ++ AV + GY  PTPIQ + IPL+ +  D+ GIAQTGTGKTA+FVLP+LT
Sbjct: 3   NFDEAGLAEPILRAVKEEGYEAPTPIQREVIPLMKEGEDILGIAQTGTGKTAAFVLPLLT 62

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L + R +         IL PTRELA+Q+A++   YG+    +VA++ GG+    Q + L
Sbjct: 63  RLAEDRKKPAPHTCRALILAPTRELASQIAESVRTYGQFIGPSVAVIFGGVKPGPQLRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D++I TPGR+ DH + G + ++    +V+DEAD+MLD+GF P I+ I   +P  RQ
Sbjct: 123 SKGLDIVIATPGRLEDHMSTGGIKLDATTTVVLDEADQMLDLGFAPAIRRILGKLPKVRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+L SATM  +++ +++ FL NP  I V   S   E I+       +   +        +
Sbjct: 183 TVLLSATMPIQIRNLAKEFLSNPHEISVAPVSRPIEKIDQSVRFLNSSSKRAA---LLDI 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+D ++  I+F   K+    +   LEK G S  AIHGN  QR+R K L  FK G I+++
Sbjct: 240 LSEDDIERAIVFTRTKRGADRVSGHLEKAGLSSAAIHGNKSQRNREKSLDGFKNGRIKIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  V HV N+++PN  E Y+HRIGRT RAG+ G A +L    +  ++  
Sbjct: 300 VATDIAARGIDIDGVSHVVNYELPNVPEAYVHRIGRTARAGKSGVAVSLCDATEQPYLRD 359

Query: 360 IEKLIEKKV-----DW--LNGDLSSLNPPLEKIDIAQHNH 392
           IE+LI +K+     DW   +GD+S+ +P  E   + +H  
Sbjct: 360 IERLIGRKIPSGDSDWDGASGDVSTFDPTAEPQRLKRHKR 399


>gi|163789736|ref|ZP_02184173.1| hypothetical protein CAT7_05876 [Carnobacterium sp. AT7]
 gi|159874958|gb|EDP69025.1| hypothetical protein CAT7_05876 [Carnobacterium sp. AT7]
          Length = 423

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 155/427 (36%), Positives = 232/427 (54%), Gaps = 6/427 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F +L L+  ++ A+ +AGY K TPIQ   IP +L   D+ G AQTGTGKTA+F LP+ 
Sbjct: 1   MLFNELELNQHLLHALKEAGYTKATPIQEDAIPHLLNNKDLLGCAQTGTGKTAAFALPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I+E+        + LIL PTRELA Q+ ++F+ Y K   L + ++ GG+    Q   L
Sbjct: 61  QNIMEEKTVGKGAIKALILAPTRELAIQIGESFQTYAKYLPLNIQVIFGGVSQNPQTATL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG D+LI TPGR+LD   +G + +N +E  V+DEAD MLDMG +  +++I   +P  RQ
Sbjct: 121 KRGTDILIATPGRLLDLIRQGFVKLNQVEFFVLDEADMMLDMGMLRDVRHIIRELPKKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           ++ FSATM  E++K++   L NP ++ VN  SST E I                +     
Sbjct: 181 SMFFSATMPTEIEKLAGTILSNPVKVVVNPVSSTVEVILQSVYRVAKTDKTNLLIHLL-- 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                ++  ++F   K     +   L + GF+  AIHGN  Q +R + L NFK     ++
Sbjct: 239 -KNKQVERSLVFSRTKHGANKIVKKLLQAGFTAEAIHGNKSQNARQQALENFKTMKTSVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P++  V  FD+P   E Y+HRIGRTGRAG  GKA +   + +   +  
Sbjct: 298 VATDIAARGIDVPELSQVIQFDLPEVPETYVHRIGRTGRAGLSGKAISFCDETESDLLRD 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP-PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           IEKL ++KV  +      L          A+   A +N+    KS    RR    ++Q+ 
Sbjct: 358 IEKLSKRKVPVIKDHPYLLKEGTQAPAQQARKAVATRNSGTRAKSKQV-RRGGQKAAQRP 416

Query: 419 HIPLKES 425
            +  K +
Sbjct: 417 RVQTKNA 423


>gi|149910902|ref|ZP_01899534.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Moritella sp.
           PE36]
 gi|149806056|gb|EDM66039.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Moritella sp.
           PE36]
          Length = 431

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 166/441 (37%), Positives = 245/441 (55%), Gaps = 21/441 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L+  ++  V   GY  PTPIQ + IP +L+  D+ G AQTGTGKTA+F LP++
Sbjct: 1   MGFSALNLNQNLINTVTKLGYETPTPIQAQAIPAILEGRDIMGGAQTGTGKTAAFALPII 60

Query: 61  TILE--------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
             L               +  R LIL PTREL+ QV  +F  Y ++  LT  L+ GG+  
Sbjct: 61  HQLMAEQLTANATEPTAKKQIRALILTPTRELSQQVHKSFVTYSEDSELTSELVYGGVSI 120

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q K L +GAD+L+ TPGR+LD  +R  L +  +E +V DEADRMLDMGF+  I+ I  
Sbjct: 121 NPQVKALVQGADILVATPGRLLDLLDRETLTLEFVEKIVFDEADRMLDMGFMEEIRRILK 180

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +P  RQT+LFSAT  D + K+S++ L +P  +EV+T ++ AE +E    A      ++ 
Sbjct: 181 HLPKKRQTMLFSATFDDAIFKLSKSLLNDPLLVEVDTRNAAAEQVEQIVYAVDNDRKREL 240

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                           +IF   K+   +L   + K G    A+HG+  Q +R + L +FK
Sbjct: 241 TSYL---IGSRNWHQVLIFTRTKQGADSLAKEMCKDGIKTIAVHGDKSQGARERGLEDFK 297

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G ++ +VA+D+AARGLDI  + HV NF++P +AE+YIHRIGRTGRAG  G A +LV+  
Sbjct: 298 NGKVRALVATDVAARGLDIEQLKHVINFELPFKAEDYIHRIGRTGRAGLSGTATSLVSIG 357

Query: 353 DIKHIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           +   ++ IE L++ ++   WL G    L+ P++       +   K        T   RR 
Sbjct: 358 ENWLLEEIETLLDTRLVAQWLPGYEPDLSKPVD-------DGRGKGGGKGNGRTDDKRRA 410

Query: 411 KNYS-SQKSHIPLKESEKISK 430
           KN S  +K++   K+  K S+
Sbjct: 411 KNRSYGKKTNNRAKKDTKPSR 431


>gi|307104817|gb|EFN53069.1| eukaryotic initiation factor 4A (ATP-dependent RNA helicase eIF4A)
           [Chlorella variabilis]
          Length = 410

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 193/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+ KP+ IQ K I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 38  SFDQMNLHENLLRGIYAYGFEKPSAIQQKGIVPFGKGLDVIQQAQSGTGKTATFCAGILQ 97

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+         + L+L PTRELA Q+       G   N+     +GG       + L+ 
Sbjct: 98  NLDYTLVE---CQALVLAPTRELAQQIEKVMRALGDYLNVKCHACVGGTSVREDTRILQS 154

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 155 GVHVVVGTPGRVYDMLRRRALRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 214

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 215 VFSATLPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDL--YE 272

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   + ++  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 273 TLAITQSVIFANTRRKVDWLTDKMRERDHTVSATHGDMDQNTRDVIMREFRSGSSRVLIT 332

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+PN  ENY+HRIGR+GR GR G A   V  +D + +  I+
Sbjct: 333 TDLLARGIDVQQVSLVINYDLPNNPENYLHRIGRSGRFGRKGVAINFVTNDDERLLQDIQ 392

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ L  +++ L
Sbjct: 393 RFYNTVIEELPSNIADL 409


>gi|195154715|ref|XP_002018267.1| GL17616 [Drosophila persimilis]
 gi|194114063|gb|EDW36106.1| GL17616 [Drosophila persimilis]
          Length = 527

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 120/441 (27%), Positives = 200/441 (45%), Gaps = 12/441 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +V  +   G    TPIQ   IP +L   D  G AQTG+GKT +F LP+L  
Sbjct: 9   FQSLGLRPWMVKQLTKLGLKGATPIQQNCIPAILSGKDCIGAAQTGSGKTFAFALPILER 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PT ELA Q+++ F   G+   + V ++ GG     +++KL + 
Sbjct: 69  LSE---EPVSHFALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQR 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++  PGR+ DH         +    ++ +    +  G       I      + +  L
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPSTRQNL 185

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSST---AETIEHCFVATYAQYSKKCALLQQLL 239
           F +    +  K S  F  +   IE +  S+        +   +              +  
Sbjct: 186 FFSATMKDFMKESSIFPISKDCIEWSQDSNVATVDTLDQRYLLCADYDRDMVLIESLRKY 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++   N +IF N KK    L  +L+        +HG + Q+ R+  LS FK   I+ +
Sbjct: 246 REENENSNVMIFTNTKKYCQLLSMTLKSMDIDNVCLHGFMRQKERVAALSRFKSNHIRTL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           +A+D+A+RGLDIP V  V N  +P   + YIHR+GRT RAGR G + ++     D++ + 
Sbjct: 306 IATDVASRGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLG 365

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           AIE  I  K+     D       +E+I   Q N  R+ + +   +  FD R +NY  +  
Sbjct: 366 AIETEINTKLTEHPID----QRMVERI-FMQVNVTRRESEMQLDNNDFDERAQNYRRKTW 420

Query: 419 HIPLKESEKISKLQQDIQEND 439
            +  K+ +++  L +  Q++ 
Sbjct: 421 IMEGKDPDEMEALYRKKQKDK 441


>gi|332084705|gb|EGI89893.1| ATP-dependent RNA helicase rhlB [Shigella boydii 5216-82]
          Length = 421

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 137/413 (33%), Positives = 206/413 (49%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PT ELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRKVNQPRALIMAPTHELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYTKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGAPRNRRRSG 421


>gi|253690374|ref|YP_003019564.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|259585615|sp|C6DHF5|RHLB_PECCP RecName: Full=ATP-dependent RNA helicase rhlB
 gi|251756952|gb|ACT15028.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 430

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 137/420 (32%), Positives = 212/420 (50%), Gaps = 10/420 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P+V+ A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKTLAFLASTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +   PR LI+ PTRELA Q+  + E       L + L  GG  ++ Q K
Sbjct: 70  YLLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLENGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 AQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F +G + 
Sbjct: 249 TLLEEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGNLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG+ G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHA-RKNNPIPQKSTGFDRRKKN 412
            AIE  I   +     +    ++ L  P       + N+  R++N  P++S      +K 
Sbjct: 369 PAIETYIGHSIPVSKYNSDALMNDLPAPKRLTRPPRSNNGPRRHNNAPRRSGAPRNNRKR 428


>gi|228991413|ref|ZP_04151368.1| ATP-dependent RNA helicase [Bacillus pseudomycoides DSM 12442]
 gi|228768343|gb|EEM16951.1| ATP-dependent RNA helicase [Bacillus pseudomycoides DSM 12442]
          Length = 433

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 144/440 (32%), Positives = 240/440 (54%), Gaps = 16/440 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+V+   D+ G A+TGTGKT +FVLP+L 
Sbjct: 3   NFLELGISETFNHTLRENGIAEATPIQEKAIPVVMAGKDIIGQAKTGTGKTLAFVLPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    EK   +      L I G      Q +KL+
Sbjct: 63  KIDPESSDVQA---LIVAPTRELALQITTEIEKMLVHQENINVLAIYGGQDVAQQMRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  ++++N+ +LV+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETPESKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ +++ P+ I++ +   T   I            +      + + 
Sbjct: 180 MLFSATMPKDIKKLAKRYMKEPEMIQIQSAEVTVNNI---KQGIIETTDRTKQDALRHVM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K+    L   L+  G++   +HG++ Q  R +++ +F++  IQ ++
Sbjct: 237 DRDQPFLAVIFCRTKRRASKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFRDAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D  ++  I
Sbjct: 297 ATDVAARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAPKDEMYLKEI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR----KKNYSSQ 416
           EK I   +         L  P+++ D A     ++    P+K+  + ++        + Q
Sbjct: 357 EKGIGATLQR-----QELELPVKQNDDASEKKKKQQIKKPKKTGQYGQKDNPGGSKNTKQ 411

Query: 417 KSHIPLKESEKISKLQQDIQ 436
           +S     E +   K  Q  +
Sbjct: 412 RSFHKPSEKKNSKKQGQQRR 431


>gi|254461770|ref|ZP_05075186.1| ATP-dependent RNA helicase DeaD [Rhodobacterales bacterium
           HTCC2083]
 gi|206678359|gb|EDZ42846.1| ATP-dependent RNA helicase DeaD [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 450

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 149/374 (39%), Positives = 226/374 (60%), Gaps = 5/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  +GLS ++V  + + G   PTPIQ + IP  L  HDV G+AQTGTGKTA+F LP++T
Sbjct: 6   EFETMGLSERLVARLKELGLTTPTPIQARAIPEALNGHDVLGLAQTGTGKTAAFGLPLIT 65

Query: 62  --ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                 GR   +  R LIL PTRELA Q+ +N + Y K   + VAL++GG     Q+K+L
Sbjct: 66  LLSENPGRPSPKTVRALILAPTRELAGQIVENLKDYTKGTPIKVALVVGGQSINVQSKRL 125

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G D+L+ TPGR++D  +R  L +     LV+DEAD+MLDMGFI  ++ I +++P  RQ
Sbjct: 126 EKGIDILVATPGRLIDLMDRRALTLKESHFLVLDEADQMLDMGFIHALRQIAAVLPEQRQ 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + +++  +L++PKRI+V+ P   A+ +            +   +     
Sbjct: 186 TMLFSATMPKLMNEIANTYLKSPKRIQVSPPGKAADKVTQVVHFIAKTEKQSLLIELL-- 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  ++F   K     L   L  +GF+  +IHGN  Q  R + L+ FK G ++++
Sbjct: 244 -GAHKDERALVFGRTKHGCEKLMKQLVARGFAATSIHGNKSQGQRERALAAFKAGEMKVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIPDV HV+N+++PN  + Y+HRIGRT RAG+ G A    A +++  +  
Sbjct: 303 VATDVAARGLDIPDVRHVYNYELPNVPDAYVHRIGRTARAGKDGAAIAFCAPDEMDLLKD 362

Query: 360 IEKLIEKKVDWLNG 373
           IEK ++  +   +G
Sbjct: 363 IEKTMKISIPVASG 376


>gi|225468923|ref|XP_002273212.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 470

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 144/433 (33%), Positives = 226/433 (52%), Gaps = 9/433 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+  ++V A  + G+  P+ IQ + IP  L+  D+ G+AQTG+GKT +F LP+L 
Sbjct: 44  SFKDLGICEQLVEACENLGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 103

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L      +      +L PTRELA Q+A+ FE  G    L  A+L+GG+    Q   L +
Sbjct: 104 ALLDTPQVLFA---CVLSPTRELAIQIAEQFEALGSGIGLKCAVLVGGVDHTQQAIALAK 160

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIE-ILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR++DH +  K         LV+DEADR+L+  F   I  I S++P  R+T
Sbjct: 161 RPHIVVGTPGRLMDHLSNTKGFSLRTMKYLVLDEADRLLNDDFEKAIDEILSVIPRERKT 220

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT +++K+    L+NP +IEV +  ST +T+           +K        + 
Sbjct: 221 YLFSATMTKKVRKLQRACLRNPVKIEVASKYSTVDTL---KQQYRFVPAKYKECYLVYIL 277

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++ +    ++F         L   L   G     I G++ Q  R+  L+ FK G   +++
Sbjct: 278 TELSGSTTMVFTRTCDATRLLALLLRNLGLRAIPISGHMSQAKRLGALNKFKAGECNILI 337

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A+RGLDIP V  V N+D+P+ +++YIHR+GRT RAGR G A +LV + +++    I
Sbjct: 338 CTDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQI 397

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI--PQKSTGFDRRKKNYSSQKS 418
           EKLI KK+         +   LE++  A+     K       +K  G D  ++      +
Sbjct: 398 EKLIGKKLPEFPAQEEEVLLLLERVTEAKRISQMKVKETGGKKKRRGGDEGEEEIDRYLA 457

Query: 419 HIPLKESEKISKL 431
               K S+K+ K 
Sbjct: 458 SKNGKSSKKLKKR 470


>gi|239816848|ref|YP_002945758.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
 gi|239803425|gb|ACS20492.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
          Length = 486

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 160/385 (41%), Positives = 224/385 (58%), Gaps = 9/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L+  +  AV + GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L 
Sbjct: 4   SFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLPLLQ 63

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + K       P        +L PTRELA QVA   + Y K  NL   ++ GGI  + Q 
Sbjct: 64  RMLKHENASTSPARHPVRALVLLPTRELADQVAQQVKLYAKYTNLRSTVVFGGIDMKPQT 123

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P 
Sbjct: 124 LELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPK 183

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R TLLFSAT + E+++++ ++LQNP  IEV       ET        Y+          
Sbjct: 184 QRTTLLFSATFSPEIKRLAGSYLQNPVTIEVAR---PNETASTVEQHFYSVTDDDKRRAL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + +  Q  +    +F N K     L  SLE+ G    A+HG+  Q  R+K L++FK G +
Sbjct: 241 KQIVKQRGITQAFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLKALASFKAGEV 300

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIK 355
            L+V +D+AARGLDI DV  VFNFD+P  AE+Y+HRIGRTGRAG  G A +  +   D +
Sbjct: 301 DLLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFASGGNDAR 360

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNP 380
            +  IEKLI+KK++    +     P
Sbjct: 361 LVADIEKLIKKKIELEPVEFEEDRP 385


>gi|198458635|ref|XP_001361114.2| GA11795 [Drosophila pseudoobscura pseudoobscura]
 gi|198136412|gb|EAL25690.2| GA11795 [Drosophila pseudoobscura pseudoobscura]
          Length = 527

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 120/441 (27%), Positives = 200/441 (45%), Gaps = 12/441 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +V  +   G    TPIQ   IP +L   D  G AQTG+GKT +F LP+L  
Sbjct: 9   FQSLGLRPWMVKQLTKLGLKGATPIQQNCIPAILSGKDCIGAAQTGSGKTFAFALPILER 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PT ELA Q+++ F   G+   + V ++ GG     +++KL + 
Sbjct: 69  LSE---EPVSHFALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQR 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++  PGR+ DH         +    ++ +    +  G       I      + +  L
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPSTRQNL 185

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSST---AETIEHCFVATYAQYSKKCALLQQLL 239
           F +    +  K S  F  +   IE +  S+        +   +              +  
Sbjct: 186 FFSATMKDFMKESSIFPISKDCIEWSQDSNVATVDTLDQRYLLCADYDRDMVLIESLRKY 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++   N +IF N KK    L  +L+        +HG + Q+ R+  LS FK   I+ +
Sbjct: 246 REENENSNVMIFTNTKKYCQLLSMTLKSMDIDNVCLHGFMRQKERVAALSRFKSNHIRTL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           +A+D+A+RGLDIP V  V N  +P   + YIHR+GRT RAGR G + ++     D++ + 
Sbjct: 306 IATDVASRGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLG 365

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           AIE  I  K+     D       +E+I   Q N  R+ + +   +  FD R +NY  +  
Sbjct: 366 AIETEINTKLTEHPID----QRMVERI-FMQVNVTRRESEMQLDNNDFDERAQNYRRKTW 420

Query: 419 HIPLKESEKISKLQQDIQEND 439
            +  K+ +++  L +  Q++ 
Sbjct: 421 IMEGKDPDEMEALYRKKQKDK 441


>gi|194904159|ref|XP_001981012.1| GG23261 [Drosophila erecta]
 gi|190652715|gb|EDV49970.1| GG23261 [Drosophila erecta]
          Length = 709

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 127/405 (31%), Positives = 210/405 (51%), Gaps = 19/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           FA+    P ++  +   G+ KP+PIQ +  P++LQ HD+ GIAQTGTGKT +F+LP M+ 
Sbjct: 294 FAEY---PDLLGEITKMGFPKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIH 350

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKLE 120
              +   R       +L         +    E    ++    A+ + G      Q   LE
Sbjct: 351 TEYQSTPRGTRGGANVLVLAPTRELALQIEMEVKKYSFRDMKAVCVYGGGDRRMQISDLE 410

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA+++ICTPGR+ D      + ++ I  LV+DEADRMLDMGF P I+ +   +   RQT
Sbjct: 411 RGAEIIICTPGRLNDLVQANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQT 470

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT    ++++++++++NP ++ V +    A       +       +K   ++  ++
Sbjct: 471 IMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIQLLEDDKEKFNTIKSFVR 530

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       IIFC +K    +L   L   GF    IHGN DQ  R + +++ K G + ++V
Sbjct: 531 NMSNTDKIIIFCGRKARADDLSSELTLDGFMTQCIHGNRDQIDREQAIADIKSGAVHILV 590

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + + + +ED      +
Sbjct: 591 ATDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGRAGRKGTSISFITREDWGMAKEL 650

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
             ++++    +  +L              HN AR+   + +K   
Sbjct: 651 IDILQEAEQEVPDEL--------------HNMARRFKAMKEKRAA 681


>gi|90412948|ref|ZP_01220947.1| putative ATP-dependent RNA helicase, DEAD box family protein
           [Photobacterium profundum 3TCK]
 gi|90326127|gb|EAS42561.1| putative ATP-dependent RNA helicase, DEAD box family protein
           [Photobacterium profundum 3TCK]
          Length = 422

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 164/427 (38%), Positives = 242/427 (56%), Gaps = 16/427 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+ ++V  V + G+  PTPIQ + IP VL   D+   AQTGTGKTA+F LPM+
Sbjct: 1   MSFQALGLNTQLVDTVTELGFKTPTPIQEQAIPQVLAGDDIMAGAQTGTGKTAAFGLPMI 60

Query: 61  T---------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
                       E    +    R L+L PTRELA QV D+   Y KN ++ VA+  GG  
Sbjct: 61  QRLLASQQSEHDEGYIKKPEAIRALVLTPTRELAQQVHDSILAYSKNTSIKVAVAYGGTS 120

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q K L+ G D+LI TPGR+LDH   G + ++ IE LV+DEADRMLDMGF+  I+ I 
Sbjct: 121 MGVQVKALKSGVDILIATPGRLLDHAFTGTVDLSKIECLVLDEADRMLDMGFVVDIKRIM 180

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
             +P  RQTLLFSAT +++++K++ + L +PK IEV   +  AE++            ++
Sbjct: 181 QRMPRKRQTLLFSATFSNQVKKLAYDILADPKLIEVTPENIAAESVTQMVYPVDKHRKRE 240

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                            +IF   K+    L   L   G    +I+G+  Q +R + LS+F
Sbjct: 241 LLSYL---IGSRNWNQVLIFTKTKQGSDELAKELILDGIKAVSINGDKSQGARQRALSDF 297

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           KEG ++ MVA+D+AARGLDI  +G+V NFD+P +AE+Y+HRIGRTGRAG  G A +L++ 
Sbjct: 298 KEGKVRAMVATDVAARGLDIEQLGYVVNFDLPFQAEDYVHRIGRTGRAGLTGSAISLMSI 357

Query: 352 EDIKHIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           ++   + AIE+L++ ++  +WL G      P ++  D  + +   +   I  KS     R
Sbjct: 358 DEEWALRAIEELLDTRLPQEWLEGYEPD--PTIKAQDNRRSSSTSEKRRIKAKSKIHKNR 415

Query: 410 KKNYSSQ 416
            ++ + +
Sbjct: 416 GRHQTKR 422


>gi|21464402|gb|AAM52004.1| RE27528p [Drosophila melanogaster]
          Length = 507

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 139/428 (32%), Positives = 230/428 (53%), Gaps = 7/428 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLGL+  +  A  +  +  P+ IQ + IP+ LQ  DV G+A+TG+GKT +F LP+L
Sbjct: 61  LTWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 120

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      L+L PTRELA Q+ + FE  G    +   +++GG+   AQ  +L 
Sbjct: 121 HALLENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 177

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGR++DH    K      I+ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 178 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 237

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L++P ++EV+    T E ++  ++       K   +    +
Sbjct: 238 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPV---KYKDVYLVHI 294

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK     ++
Sbjct: 295 LNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 354

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA TLV++ DI+    
Sbjct: 355 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQR 414

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE L+ K++     +   +    E++  AQ     +   +     G  R    +   ++ 
Sbjct: 415 IEHLLGKQLTLYKCEEDEVMALQERVAEAQRTAKLELKDLEDTRGGHKRGGDTHDDSENF 474

Query: 420 IPLKESEK 427
              ++  K
Sbjct: 475 TGARKRMK 482


>gi|24585582|ref|NP_610090.1| CG9253 [Drosophila melanogaster]
 gi|7298752|gb|AAF53963.1| CG9253 [Drosophila melanogaster]
          Length = 507

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 139/428 (32%), Positives = 230/428 (53%), Gaps = 7/428 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLGL+  +  A  +  +  P+ IQ + IP+ LQ  DV G+A+TG+GKT +F LP+L
Sbjct: 61  LTWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 120

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      L+L PTRELA Q+ + FE  G    +   +++GG+   AQ  +L 
Sbjct: 121 HALLENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 177

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGR++DH    K      I+ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 178 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 237

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L++P ++EV+    T E ++  ++       K   +    +
Sbjct: 238 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPV---KYKDVYLVHI 294

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK     ++
Sbjct: 295 LNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 354

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA TLV++ DI+    
Sbjct: 355 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQR 414

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE L+ K++     +   +    E++  AQ     +   +     G  R    +   ++ 
Sbjct: 415 IEHLLGKQLTLYKCEEDEVMALQERVAEAQRTAKLELKDLEDTRGGHKRGGDTHDDSENF 474

Query: 420 IPLKESEK 427
              ++  K
Sbjct: 475 TGARKRMK 482


>gi|325183171|emb|CCA17628.1| putative RNA helicase [Albugo laibachii Nc14]
          Length = 1157

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 208/379 (54%), Gaps = 3/379 (0%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
             F +      V+  V+  G+ KPTPIQ +  P+ L   D+ GI+ TG+GKT +F+LP + 
Sbjct: 754  TFEEASFPAYVLEEVMRLGFQKPTPIQCQGWPMALSGRDMVGISATGSGKTLAFLLPAIV 813

Query: 62   ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +           P  LI+ PTRELA Q+     K+G +  +    + GG+P   Q  +L
Sbjct: 814  HINAQPHLEPGDGPIVLIIAPTRELAVQIQQEANKFGASSKIKNTCVYGGVPKYNQIMEL 873

Query: 120  ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             +G ++ ICTPGR++D  ++GK  +  +  LV+DEADRMLDMGF P ++ I S +   RQ
Sbjct: 874  RQGVEICICTPGRMIDLLSQGKTNLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQ 933

Query: 180  TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            TL++SAT   E+  ++ +FL +  ++ V +   TA       V     + K  AL+   L
Sbjct: 934  TLMWSATWPKEIVSLAHDFLTDYIQVTVGSLELTANKKIEQIVEVMDDHQKYNALVAH-L 992

Query: 240  QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +        I+FC  K+    L  +L    +   AIHGN  Q  R  +L +FK+G  Q++
Sbjct: 993  RVIYDGGRIILFCETKRGADELSRNLRNSRYICKAIHGNKSQEERDYVLKDFKQGKTQIL 1052

Query: 300  VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            VA+D+A+RGLDI D+ +V NFD+P   E+YIHRIGRT RAG  G A +    ++ +    
Sbjct: 1053 VATDVASRGLDIKDIRYVINFDMPKNVEDYIHRIGRTARAGSKGTAISFFTSDNGRLASP 1112

Query: 360  IEKLIEKKVDWLNGDLSSL 378
            + +++E+    +   L SL
Sbjct: 1113 LIRVLEEANQQVPAALRSL 1131


>gi|118586395|ref|ZP_01543844.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163]
 gi|118433182|gb|EAV39899.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163]
          Length = 509

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 152/385 (39%), Positives = 230/385 (59%), Gaps = 14/385 (3%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM 72
           + AV   GY + TPIQ KTIPL++Q  DV G AQTGTGKTA+F LP+L  ++    +   
Sbjct: 1   MSAVKKHGYDEATPIQEKTIPLIIQGVDVIGQAQTGTGKTAAFGLPILEEVDP---KNPQ 57

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
            + L++ PTRELA Q  +   K G + ++   ++ GG     Q   L+    +L+ TPGR
Sbjct: 58  IQALVISPTRELAMQTEEELNKLGSDKHVKTQVIFGGYDIRRQIHALKEHPQILVGTPGR 117

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           ++DH NR  +    ++ LVIDEAD ML+MGF+  I+ I    P  RQTLLFSATM D+++
Sbjct: 118 LIDHLNRHTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPDDRQTLLFSATMPDDIK 177

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           K+   F+++P+ + + +   T + ++   V T                  +  +  I+F 
Sbjct: 178 KIGVKFMEDPEEVHIASKGLTIDLVDQYLVNTREYEKFDAMTRL---FDVEQPELAIVFG 234

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             K+ V  L  +L+ +G+    IHG++DQ +RM+ L +FK+G +Q +VA+D+AARGLDI 
Sbjct: 235 RTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVATDVAARGLDIS 294

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
            V HV+N+DVP   E+Y+HRIGRTGRAG HG + T V + +I ++ AIEKLI K+     
Sbjct: 295 GVTHVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVVRGEIDYLRAIEKLINKR----- 349

Query: 373 GDLSSLNPP-LEKIDIAQHNHARKN 396
             +++L PP  E+  IA+  +A+  
Sbjct: 350 --MAALKPPSAEEAHIARLKNAKAE 372


>gi|67527984|ref|XP_661837.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
 gi|74681080|sp|Q5B5E7|RRP3_EMENI RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|40740142|gb|EAA59332.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
 gi|259481158|tpe|CBF74430.1| TPA: ATP-dependent rRNA helicase rrp3 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5B5E7] [Aspergillus
           nidulans FGSC A4]
          Length = 465

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 143/426 (33%), Positives = 225/426 (52%), Gaps = 9/426 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+  ++  A  + GY  PTPIQ + IPL L+  DV G+A+TG+GKTA+F LPML 
Sbjct: 47  SFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQ 106

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    +     L+L PTRELA Q++  FE  G    +  A+++GG+   AQ+  L +
Sbjct: 107 ALMEAPQTLF---GLVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGK 163

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +    N     + N++ L IDEADR+LDM F   +  I  ++P TR T
Sbjct: 164 KPHIIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHT 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L NP R+ V++   T  T++  ++       K   L    L 
Sbjct: 224 YLFSATMSTKVESLQRASLSNPVRVSVSSKYQTVSTLQSSYICIPH---KHKNLYLVYLL 280

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ IIF         +   L   GF    +HG + Q +R+  L  F+  +  ++V
Sbjct: 281 NEFAGQSAIIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFRSRSRDILV 340

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  VFNFD+P  ++ YIHR+GRT RAG+ G A + V + D++    I
Sbjct: 341 ATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQYDVEVWLRI 400

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  + KK+     +   +    E++  A      +     +K     R KK    ++S  
Sbjct: 401 EHALSKKLPEYQVEKDEVMVMSERVAEASRQATIEMKSFDEKKGA--RGKKFGKGKRSRD 458

Query: 421 PLKESE 426
            + + E
Sbjct: 459 DMDQEE 464


>gi|329295922|ref|ZP_08253258.1| ATP-dependent RNA helicase DeaD [Plautia stali symbiont]
          Length = 617

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 136/390 (34%), Positives = 230/390 (58%), Gaps = 8/390 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+  ++ ++   GYVKP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     VR P+ L+L PTRELA QVA+   ++ K+      + +  G  ++ Q + L 
Sbjct: 67  NVDPS---VRAPQILVLAPTRELAVQVAEAMTEFSKHMRGINVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++++  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSSLRGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + ++++++ F+++P+ + + +  +T   I   +   Y + S       +   
Sbjct: 184 ALFSATMPEAIRRITKRFMKDPQEVRMQSSITTRPDISQSYWTAYGRKSDALVRFLE--- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 -AEDFDAAIIFVRTKNATLEVAETLERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           E+ ++  +  +    + L        +A  
Sbjct: 360 ERTMKLTIPEVELPNAELLSQRRLAQLAAK 389


>gi|149196871|ref|ZP_01873924.1| Probable ATP dependent RNA helicase [Lentisphaera araneosa
           HTCC2155]
 gi|149139981|gb|EDM28381.1| Probable ATP dependent RNA helicase [Lentisphaera araneosa
           HTCC2155]
          Length = 537

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 164/486 (33%), Positives = 258/486 (53%), Gaps = 36/486 (7%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLP 58
           MD F  LGL P +   +   G+ +P+PIQ + IP++L Q HD+ G AQTGTGKTA+F LP
Sbjct: 1   MDKFTALGLEPWITQCLEAKGFKEPSPIQEQAIPVLLSQDHDIIGQAQTGTGKTAAFGLP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           ++  +E G  +   P+ LIL PTRELA QV +  + + K   +T   L GG P   Q + 
Sbjct: 61  IVQKIEPGLKK---PQALILCPTRELAIQVNEEIKSFCKGRGITTVTLYGGAPIMDQKRA 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G D+++ TPGR +     GKL ++++E LV+DEAD ML+MGF+  ++ +    P  R
Sbjct: 118 LKKGVDLVVATPGRCIHFIEDGKLELDSLEYLVLDEADEMLNMGFVEDVEKVLKASPDDR 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             L+FSATM   L+K++E+++ N   I+  + + T ETI+      Y +           
Sbjct: 178 TVLMFSATMPPRLKKIAESYMHNSITIKAKSETMTMETIDQVVYEAYPENK---FAALCR 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   +    GIIFC  K  V  +   L  +G++   IHG++ Q SR ++L  F+   I L
Sbjct: 235 IMDLEKDFYGIIFCRTKVEVEKVSAGLANEGYAADYIHGDVAQESRERLLKRFRNRNISL 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+ D+ H+ NF +P + E+Y+HRIGRTGRAG+ G A TL+  ++   + 
Sbjct: 295 LIATDVAARGIDVTDLSHIVNFSLPEQFESYVHRIGRTGRAGKTGTAITLITPKERSKMS 354

Query: 359 AIEK----------------LIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHAR---KN 396
            IEK                +I+ ++  L+ +L+     N  LE++   +   A+    N
Sbjct: 355 FIEKKTGAKTERRKLPFGEEMIKLRIQKLSKELAHFQENNAELEELAPIKEVAAQLLEDN 414

Query: 397 NPIP------QKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMP 450
           +P+        K  G      NY         K+S      + +    D+ SL F     
Sbjct: 415 SPVDIITALLSKIFGTKLDASNYPDINCSAAKKKSRDSRNFKGNTASGDSKSLFFAKGKR 474

Query: 451 AFMLPK 456
             M+PK
Sbjct: 475 DGMMPK 480


>gi|149180848|ref|ZP_01859350.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. SG-1]
 gi|148851367|gb|EDL65515.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. SG-1]
          Length = 496

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 137/420 (32%), Positives = 224/420 (53%), Gaps = 11/420 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LG+S  V+  +       PTPIQ K IP V++  DV   AQTGTGKT +F+LP++ 
Sbjct: 3   NFKSLGISEAVIERLQKENVTTPTPIQEKAIPAVIKGKDVIAQAQTGTGKTLAFILPIIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
             +  +  ++    LI+ PTRELA Q+ +   K  ++      L +  G   E Q  KL 
Sbjct: 63  NFDFNQQSIQ---ALIVTPTRELALQITEEVRKLIRHIEGISVLPVYGGQDVEKQLNKLR 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRILDH  RG + ++ +  LV+DEAD+ML +GF+  ++ I    P TRQT
Sbjct: 120 KNVGIVVGTPGRILDHIGRGTIDLSELNSLVLDEADQMLHIGFLKEVEMIIRETPKTRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ DE++ +++  +++P+ I V      A+++            +        + 
Sbjct: 180 LLFSATIPDEIKTLAKKHMKSPEYISVERKQGPAKSV---EQKAVFVNDRAKQATLIEMI 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      +IFC  K+ V  L  +L  +GF    +HG++ Q  R K++  F++   QL++
Sbjct: 237 KEYRPYLAVIFCRTKRRVTKLYEALASEGFMCDELHGDLSQAKREKVMKRFRDAEFQLLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HVFN+D+P  A++Y+HRIGRTGRAG  G A T  + +    +  I
Sbjct: 297 ATDVAARGLDVEGITHVFNYDIPEDADSYVHRIGRTGRAGEKGLAVTFYSPQQKDQLAEI 356

Query: 361 EKLIEKKVDWLN----GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           EK +  ++   N     D         K   ++  H  ++    +   G   +++N+S  
Sbjct: 357 EKELNIRLPKQNIGNIIDRDDTEKRKPKKAASRKEHTSRDKKPREDRKGSRSKQENHSRN 416


>gi|322700752|gb|EFY92505.1| ATP-dependent RNA helicase DHH1 [Metarhizium acridum CQMa 102]
          Length = 502

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 114/377 (30%), Positives = 185/377 (49%), Gaps = 7/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +  L   ++  + +AG+ KP+PIQ + IP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 49  LEFENFALKRDLLMGIFEAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPAL 108

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +V   + LIL PTRELA Q +   +  GK+  + V +  GG        +L+
Sbjct: 109 ERI---NPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDILRLQ 165

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +    ++   + ++DEAD++L + F P I+ +    P  RQ 
Sbjct: 166 DPVHIVVGTPGRILDLAGKSVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQV 225

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F                 T+            K+       L 
Sbjct: 226 MLFSATFPLSVKD----FSDKNMVSPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 281

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q++R ++  +F+ G  + +V
Sbjct: 282 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMQQQARNRVFHDFRNGVCRNLV 341

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 342 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNI 401

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +   +  
Sbjct: 402 ERDLGTEIQPIPPSIDK 418


>gi|222098932|ref|YP_002532990.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
 gi|229199584|ref|ZP_04326245.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1293]
 gi|221242991|gb|ACM15701.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
 gi|228583989|gb|EEK42146.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1293]
          Length = 481

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 139/418 (33%), Positives = 236/418 (56%), Gaps = 15/418 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS ++V A+   GY  PT +Q K IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FFEYKLSKEIVRALTGLGYDHPTEVQGKVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWAENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  ++  P  IE+     T + IEH     +     +   L + + + 
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEH---TLFEAIEDEKLSLLKDVTTI 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R +++ +F++G  + +VA+
Sbjct: 240 ENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE+
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 363 LIEKKV---------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            I  ++         + + G  +       K  I +  +A  N  I +      ++KK
Sbjct: 360 YIGFEIPKAIGPSKEEVMKGKAAFEEKIHAKPIIKKDKNADINKGIMKLYFNGGKKKK 417


>gi|221483330|gb|EEE21649.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
 gi|221507816|gb|EEE33403.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
          Length = 550

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 125/379 (32%), Positives = 194/379 (51%), Gaps = 2/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F        ++  +   G+ KPT IQ++  P+ L   D+ GIA+TG+GKT +F+LP + 
Sbjct: 130 TFEYTSFPSYILDVINQTGFQKPTAIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIV 189

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       +   P  LIL PTREL  Q+      +  +  +  A+  GG+P   Q  +L
Sbjct: 190 HINAQPYLNKGDGPIVLILAPTRELVEQIRAQCRTFAASSKIHHAVAYGGVPKRPQIMEL 249

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGA++ +  PGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 250 ERGAEICVACPGRLIDFLESRVTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQ 309

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+Q ++ +  +                          Q  +K   L  LL
Sbjct: 310 TLMWSATWPKEVQNLARDLCKEEPVHINVGSLDLQACQNIKQEVMVVQEYEKRGQLMSLL 369

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +IF   K+   NL   +  +G+   ++HG+  Q  R  +L  FK G   +M
Sbjct: 370 RRIMDGSKILIFAETKRGADNLTRDMRVEGWPALSLHGDKKQEERTWVLDEFKNGRNPIM 429

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLD+ D+ HV N+D+PN+ E+YIHRIGRTGRAG  G A+T    +  +    
Sbjct: 430 VATDVASRGLDVKDIRHVINYDMPNQIEDYIHRIGRTGRAGAKGCAYTFFTPDKPRLARE 489

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + +++      +  +L SL
Sbjct: 490 LVRVLRGANQPVPPELESL 508


>gi|237839461|ref|XP_002369028.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|211966692|gb|EEB01888.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
          Length = 550

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 125/379 (32%), Positives = 194/379 (51%), Gaps = 2/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F        ++  +   G+ KPT IQ++  P+ L   D+ GIA+TG+GKT +F+LP + 
Sbjct: 130 TFEYTSFPSYILDVINQTGFQKPTAIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIV 189

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       +   P  LIL PTREL  Q+      +  +  +  A+  GG+P   Q  +L
Sbjct: 190 HINAQPYLNKGDGPIVLILAPTRELVEQIRAQCRTFAASSKIHHAVAYGGVPKRPQIMEL 249

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGA++ +  PGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 250 ERGAEICVACPGRLIDFLESRVTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQ 309

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+Q ++ +  +                          Q  +K   L  LL
Sbjct: 310 TLMWSATWPKEVQNLARDLCKEEPVHINVGSLDLQACQNIKQEVMVVQEYEKRGQLMSLL 369

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +IF   K+   NL   +  +G+   ++HG+  Q  R  +L  FK G   +M
Sbjct: 370 RRIMDGSKILIFAETKRGADNLTRDMRVEGWPALSLHGDKKQEERTWVLDEFKNGRNPIM 429

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLD+ D+ HV N+D+PN+ E+YIHRIGRTGRAG  G A+T    +  +    
Sbjct: 430 VATDVASRGLDVKDIRHVINYDMPNQIEDYIHRIGRTGRAGAKGCAYTFFTPDKPRLARE 489

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + +++      +  +L SL
Sbjct: 490 LVRVLRGANQPVPPELESL 508


>gi|226294425|gb|EEH49845.1| ATP-dependent RNA helicase DHH1 [Paracoccidioides brasiliensis
           Pb18]
          Length = 577

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 187/377 (49%), Gaps = 7/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 109 LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 168

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                  ++ +    LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 169 ERTNPKNSKTQ---ALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLN 225

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 226 EAVHIIVGTPGRILDLASKGVADLSECSTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQI 285

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F     R           T+            K+       L 
Sbjct: 286 MLFSATFPLIVKS----FKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 341

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 342 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQHNRNRVFHDFRNGVCRNLV 401

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 402 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRYNLYKI 461

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +   +  
Sbjct: 462 EQELGTEIQPIPQSIDK 478


>gi|295657321|ref|XP_002789230.1| ATP-dependent RNA helicase DHH1 [Paracoccidioides brasiliensis
           Pb01]
 gi|226283998|gb|EEH39564.1| ATP-dependent RNA helicase DHH1 [Paracoccidioides brasiliensis
           Pb01]
          Length = 515

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 187/377 (49%), Gaps = 7/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                  ++ +    LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 107 ERTNPKNSKTQ---ALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLN 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 164 EAVHIIVGTPGRILDLASKGVADLSECSTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQI 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F     R           T+            K+       L 
Sbjct: 224 MLFSATFPLIVKS----FKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQHNRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRYNLYKI 399

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +   +  
Sbjct: 400 EQELGTEIQPIPQSIDK 416


>gi|225685109|gb|EEH23393.1| ATP-dependent RNA helicase dhh1 [Paracoccidioides brasiliensis
           Pb03]
          Length = 515

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 187/377 (49%), Gaps = 7/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                  ++ +    LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 107 ERTNPKNSKTQ---ALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLN 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 164 EAVHIIVGTPGRILDLASKGVADLSECSTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQI 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F     R           T+            K+       L 
Sbjct: 224 MLFSATFPLIVKS----FKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQHNRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRYNLYKI 399

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +   +  
Sbjct: 400 EQELGTEIQPIPQSIDK 416


>gi|331086825|ref|ZP_08335902.1| hypothetical protein HMPREF0987_02205 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409991|gb|EGG89426.1| hypothetical protein HMPREF0987_02205 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 529

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 135/369 (36%), Positives = 214/369 (57%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LG+ P++  AV   G+ + +PIQ K IP+++   D+ G AQTGTGKTA+F +PML
Sbjct: 4   LRFEELGICPEIQKAVKHMGFEEASPIQSKAIPVMMTGKDIIGQAQTGTGKTAAFGIPML 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++    +++     +L PTRELA QVA+      K  +    L I  G     Q + L
Sbjct: 64  EKIDPKNKKLQGI---VLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  ++I TPGR++DH  R  + M  +  +++DEAD ML+MGF   I+ I   VP  RQ
Sbjct: 121 KSGTQLIIGTPGRVMDHMRRKTIKMEQVHTVILDEADEMLNMGFREDIETILEGVPEERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + ++++ F +N + I+V     T   IE  +        K    +   L
Sbjct: 181 TVLFSATMPKAIMEITKKFQKNAELIKVTKKELTVPNIEQFYYEVKP---KNKEEVLTRL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T K  +IFCN KK V  L  +L  +G+    +HG++ Q  R +++  F+ G   ++
Sbjct: 238 LDIYTPKLSVIFCNTKKQVDLLVTALLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTDIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V  VFN+D+P   E Y+HRIGRTGRAGR G++F+ V+ +++  +  
Sbjct: 298 VATDVAARGIDVDEVEAVFNYDLPQDEEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKLKE 357

Query: 360 IEKLIEKKV 368
           I++  + K+
Sbjct: 358 IQRYCKTKI 366


>gi|195498992|ref|XP_002096759.1| GE25850 [Drosophila yakuba]
 gi|194182860|gb|EDW96471.1| GE25850 [Drosophila yakuba]
          Length = 688

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 127/405 (31%), Positives = 211/405 (52%), Gaps = 19/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           FA+    P ++  +   G+ KP+PIQ +  P++LQ HD+ GIAQTGTGKT +F+LP M+ 
Sbjct: 273 FAEY---PDLLGEITKMGFPKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIH 329

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKLE 120
              +   R       +L         +    E    ++    A+ + G      Q   LE
Sbjct: 330 TEYQSTPRGTRGGANVLVLAPTRELALQIEMEVKKYSFRNMKAVCVYGGGDRRMQISDLE 389

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA+++ICTPGR+ D      + ++ I  LV+DEADRMLDMGF P I+ +   +   RQT
Sbjct: 390 RGAEIIICTPGRLNDLVQANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQT 449

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT    ++++++++++NP ++ V +    A       +       +K + ++  ++
Sbjct: 450 IMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIQLLEDDREKFSTIKSFVR 509

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       IIFC +K    +L   L   GF    IHGN DQ  R + +++ K G + ++V
Sbjct: 510 NMSNTDKIIIFCGRKARADDLSSDLTLDGFMTQCIHGNRDQSDREQAIADIKSGAVHILV 569

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + + + +ED      +
Sbjct: 570 ATDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGRAGRKGTSISFITREDWGMAKEL 629

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
             ++++    +  +L              HN AR+   + +K   
Sbjct: 630 IDILQEAEQEVPDEL--------------HNMARRFKAMKEKRAA 660


>gi|152986038|ref|YP_001347685.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
 gi|150961196|gb|ABR83221.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
          Length = 553

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 140/370 (37%), Positives = 226/370 (61%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+ P V+ A+   GY +P+PIQ ++IPL+L+ HD+ G AQTGTGKTA+F LP+L+ 
Sbjct: 8   FAALGIHPNVLAAITAVGYEEPSPIQAQSIPLILEGHDMIGQAQTGTGKTAAFALPLLSR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++  R     P+ L+L PTRELA QVA   E Y K    + V  + GG P   Q K L +
Sbjct: 68  IDPSRRE---PQMLVLVPTRELALQVATACETYSKQLPGVGVVAVYGGAPMGPQLKALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGR+ DH  R + L+  ++ LV+DEAD ML +GF+  ++ I   +P +RQT+
Sbjct: 125 GAQILVATPGRLCDHLRRDEKLLATVQRLVLDEADEMLKLGFMDDLEVIFEALPESRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++    ++ K+ +    ++  +T+          ++ + A   Q L  
Sbjct: 185 LFSATLPASIRGIA---ERHLKQPKHVKIAAKTQTVARIEQVHLMVHADQKAGSIQRLLE 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I F   K+  ++    LE+QG+   A++G++ Q  R +++ + K+G++ +++A
Sbjct: 242 VEQFDALIAFVRTKQATLDYAELLERQGYRAAALNGDMPQAQRERVIESLKDGSLDIVIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HV N D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVLNIDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKVDWL 371
           ++  +KV  +
Sbjct: 362 RVTGQKVGEV 371


>gi|21355075|ref|NP_649767.1| CG7878 [Drosophila melanogaster]
 gi|7298989|gb|AAF54192.1| CG7878 [Drosophila melanogaster]
 gi|15291973|gb|AAK93255.1| LD33749p [Drosophila melanogaster]
 gi|220946004|gb|ACL85545.1| CG7878-PA [synthetic construct]
 gi|220955750|gb|ACL90418.1| CG7878-PA [synthetic construct]
          Length = 703

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 127/405 (31%), Positives = 210/405 (51%), Gaps = 19/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           FA+    P ++  +   G+ KP+PIQ +  P++LQ HD+ GIAQTGTGKT +F+LP M+ 
Sbjct: 288 FAEY---PDMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIH 344

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKLE 120
              +   R       +L         +    E    ++    A+ + G      Q   LE
Sbjct: 345 TEYQSTPRGTRGGANVLVLAPTRELALQIEMEVKKYSFRGMKAVCVYGGGNRNMQISDLE 404

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA+++ICTPGR+ D      + ++ I  LV+DEADRMLDMGF P I+ +   +   RQT
Sbjct: 405 RGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQT 464

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT    ++++++++++NP ++ V +    A       +        K   +   ++
Sbjct: 465 IMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSFVK 524

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  +    IIFC +K    +L   L   GF    IHGN DQ  R + +++ K G ++++V
Sbjct: 525 NMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILV 584

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI D+ HV N+D P+  E Y+HR+GRTGRAGR G + +   +ED      +
Sbjct: 585 ATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAKEL 644

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            +++++    +  +L              HN AR+   +  K   
Sbjct: 645 IEILQEAEQEVPDEL--------------HNMARRFKAMKDKRAA 675


>gi|665989|dbj|BAA11693.1| deaD [Bacillus subtilis]
          Length = 479

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 143/424 (33%), Positives = 227/424 (53%), Gaps = 20/424 (4%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M  F +  +S  ++ A+   GY +PT +Q   IP  L+R D+   +QTG+GKTASF +P+
Sbjct: 1   MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +      +   P+ LIL PTRELA QV ++    G+   +    + G   F+ Q  +L
Sbjct: 61  CELANWDENK---PQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAEL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++ + +++ TPGR+LDH  +G L ++ +  LVIDEAD ML+MGFI  ++ I   +P  R 
Sbjct: 118 KQKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERT 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT+  +++K+S  ++QNP+ IEV     T   IEH   A      +    L + +
Sbjct: 178 TMLFSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEH---AVIQVREENKFSLLKDV 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +   + IIFC  K++V  L   L+  G+    IHG + Q  R  +++ FK G  + +
Sbjct: 235 LMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI ++  V N+D+P   E+Y+HR GRTGRAG  GKA + V   + + +  
Sbjct: 295 VATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLAD 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+ I  ++  +                +Q   ARK      K       KK+ S + + 
Sbjct: 355 IEEYIGFEIPKIEAP-------------SQEEVARKKPEFLAKLNDRPESKKDKSEELNK 401

Query: 420 IPLK 423
             +K
Sbjct: 402 DIMK 405


>gi|325134358|gb|EGC57003.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M13399]
 gi|325144657|gb|EGC66955.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240013]
 gi|325205823|gb|ADZ01276.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M04-240196]
          Length = 457

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 157/447 (35%), Positives = 252/447 (56%), Gaps = 29/447 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +      +
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNL---LE 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 242 RLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           ++I++L   K+             +E+I+  +     +    P+K+   + R++N     
Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKTEMREPRQRNRY--- 406

Query: 418 SHIPLKESEKISKLQQDIQENDADSLG 444
                 ES +  + +    E  A+  G
Sbjct: 407 ------ESARAQREKNTRPETTANDAG 427


>gi|229030176|ref|ZP_04186236.1| ATP-dependent RNA helicase [Bacillus cereus AH1271]
 gi|228731134|gb|EEL82056.1| ATP-dependent RNA helicase [Bacillus cereus AH1271]
          Length = 446

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 142/417 (34%), Positives = 230/417 (55%), Gaps = 11/417 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ + IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPECSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T  TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGIAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           EK +   +     +     P ++++D       +       +    D R+ + S  K
Sbjct: 360 EKTLGAPLQREIIE----QPKIKRVDENGKPVPKPAPKKSDQYRQRDSREGSRSGSK 412


>gi|194751055|ref|XP_001957842.1| GF23818 [Drosophila ananassae]
 gi|190625124|gb|EDV40648.1| GF23818 [Drosophila ananassae]
          Length = 795

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 139/411 (33%), Positives = 220/411 (53%), Gaps = 4/411 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
            F   G    ++ AV  A Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ P  M
Sbjct: 266 SFGHFGFDEPLLKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPLLM 325

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  LIL PTREL+ Q+ +  +K+GK YNL V    GG     Q+K L
Sbjct: 326 HLMDQKELQPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKAL 385

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+GA++++ TPGR++D        +  +  LV+DEADRM  MGF P +++I + V   RQ
Sbjct: 386 EQGAEIVVATPGRMIDMVKMKATNLKRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQ 445

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    +++++ + L +P RI     +   + I            K   LL  L+
Sbjct: 446 TLLFSATFKKRIERLARDVLTDPVRIVQGDLNEANQDITQSVFVFPNPLQKWNWLLCHLV 505

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +      + +IF  +K +   + ++L  + ++   +HG++DQ  R K+++ FK+    ++
Sbjct: 506 KFLSEG-SVLIFVTKKADAETVANNLLVKEYNCLLLHGDMDQADRNKVITQFKKKECDIL 564

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + +V N+D+    + + HRIGRTGRAG  G AFTLV  +D +    
Sbjct: 565 VATDVAARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAFTLVTDKDKEFAGH 624

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST-GFDRR 409
           + + +E     +  DL  L         ++    +   P    +  G+  R
Sbjct: 625 LVRNLEGADQQVPEDLMELAMKSSWFRSSRFKQGKGRKPANTYTGLGYRER 675


>gi|157962744|ref|YP_001502778.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157847744|gb|ABV88243.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 468

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 165/450 (36%), Positives = 248/450 (55%), Gaps = 9/450 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F+ LGLS  +V AV + GY  PTPIQ KTIP++L + ++   AQTGTGKTASFVLP+ 
Sbjct: 1   MPFSKLGLSTPIVKAVTEQGYTSPTPIQAKTIPVILSQRNLIAAAQTGTGKTASFVLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +    R +  R LIL PTRELA QV DN  +YGK+ +LT   + GG+  + Q ++L
Sbjct: 61  EMLSKSETQRKKRIRALILTPTRELAVQVEDNISQYGKHLDLTSMAMYGGVDSKPQRERL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD + +  +  + +E LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IQGVDILVATPGRLLDMYTQRAIHFDELEFLVLDEADRMLDMGFIEDINKIIEKLPVDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT++ ++++++        R    + +   +               K + L   L
Sbjct: 181 SLLFSATLSRQVKELA---RATITRPIEISVTHNTDNKPKIEQWLVTVDKDKKSALLSHL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  +  +IF   K+    L   LEK+G +   IHG   Q  R +IL++FK G I L+
Sbjct: 238 IQENNWQQALIFIETKQGAAKLVSQLEKRGITAECIHGGRSQEIREQILADFKSGKIGLL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ +AARGLDI ++  V N+D+P  A+ YIHRIGRTGRAG +G+A  LV+K+D K++  
Sbjct: 298 IATGIAARGLDIDELPLVINYDLPYPADEYIHRIGRTGRAGANGEAVALVSKDDFKNLCM 357

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKIDI---AQHNHARKNNPIPQKSTGFDRRKKNYS 414
           IE  +   ++   + G       P+  ++    ++      + P   K    D R+ +  
Sbjct: 358 IETRLGHLIERREIEGFAPRKEVPISILNFKPKSKQITGADSKPTSDKKPARDTRRTSAH 417

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLG 444
             K H       K  K++ D    D    G
Sbjct: 418 ETKVHGAKVHGAKTHKVKVDRANTDTTKAG 447


>gi|270264230|ref|ZP_06192497.1| putative ATP-dependent RNA helicase [Serratia odorifera 4Rx13]
 gi|270041879|gb|EFA14976.1| putative ATP-dependent RNA helicase [Serratia odorifera 4Rx13]
          Length = 429

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 134/422 (31%), Positives = 212/422 (50%), Gaps = 10/422 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P V+ A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPLVLEALEKKGFHHCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFH 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                  K   +   PR LI+ PTRELA Q+  + E   ++  L + L  GG  ++ Q K
Sbjct: 70  YLLSNPAKQDRQTNQPRALIMAPTRELAVQIHSDAEALSQSTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+L+ T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILVGTTGRLIDYAKQNYIDLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAV 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 DQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIQEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G + 
Sbjct: 249 TLIEEEWPDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGNLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE      +     +    L+ L  P +++   +  +  + N  P++     R  +  
Sbjct: 369 PAIETYTGHSIPVSKYNSDALLTDLPAP-KRLARPRGGNGPRRNSAPRRGGSAPRNNRKR 427

Query: 414 SS 415
             
Sbjct: 428 PG 429


>gi|228988681|ref|ZP_04148767.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771132|gb|EEM19612.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 481

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 132/376 (35%), Positives = 219/376 (58%), Gaps = 6/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++  LS +V  A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++++S  ++  P  IE+     T + IEH     +    ++   L + + +
Sbjct: 182 LFSATLPEDVERLSRTYMNAPIHIEIKAAGITTDKIEH---TLFEVREEEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L +  +    IHG + Q  R  ++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITSYEDRFLEEIE 358

Query: 362 KLIEKKVDWLNGDLSS 377
             I   +   N  L  
Sbjct: 359 AYIGFAIPKANAPLKE 374


>gi|239816654|ref|YP_002945564.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
 gi|239803231|gb|ACS20298.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
          Length = 601

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 150/374 (40%), Positives = 230/374 (61%), Gaps = 8/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +L L+P ++ AV + GY  PTPIQ + IP VL+ HD+ G AQTGTGKTA+F LPML
Sbjct: 1   MNFDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPML 60

Query: 61  TILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L  G     +      R L+L PTRELAAQV ++   YGK   L   ++ GG+    Q
Sbjct: 61  HKLSTGASATNKFGGIGIRALVLTPTRELAAQVEESVRTYGKYLELDSTVIFGGVGMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL++G D+L+ TPGR+LD   +G L ++ +++L++DEADRMLDMGFI  ++ I +LVP
Sbjct: 121 ISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE++ ++   L+NP+ I+V   ++T + I            K     
Sbjct: 181 KEKQSLLFSATFSDEIRDLAATLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKAL--- 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              + +++     ++F   K    ++   L K G    A+HGN  Q +R + L+ FK G 
Sbjct: 238 LAHIINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGD 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ +VA+D+AARG+DI ++ HV N+++PN +E+Y+HRIGRTGRAG  G+A + V  ++  
Sbjct: 298 IRALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCMDEEG 357

Query: 356 HIDAIEKLIEKKVD 369
            +  IE+  ++ + 
Sbjct: 358 FMQEIERFTKQTIP 371


>gi|196230330|ref|ZP_03129193.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
 gi|196225927|gb|EDY20434.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
          Length = 443

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 146/367 (39%), Positives = 214/367 (58%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGL P+++ A+ DAGY +PTPIQ   IP +L   DV GIAQTGTGKTA+FVLPM 
Sbjct: 1   MPFAALGLEPRLLSALKDAGYTEPTPIQGAAIPKILSGSDVIGIAQTGTGKTAAFVLPML 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +  +     R  R L+L PTRELAAQ+ +N   Y +     +A + GG+    Q + L
Sbjct: 61  QLLANRPPVSGRKIRALVLAPTRELAAQIEENARAYARYVPFRMATIFGGVGERPQIQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               +++I  PGR+LD   +       +E LV+DEADRMLDMGF+P I+ I   +P  RQ
Sbjct: 121 RDNVELIIACPGRLLDLMQQRHGDFTGLEFLVLDEADRMLDMGFLPDIRRIVKQLPRKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT++ E++ ++  FL NP  ++V   S+ AET+       Y         L   L
Sbjct: 181 TLLFSATLSGEIEALTHEFLHNPATVQVGRRSNPAETV---TQVAYEVPKHLKLALLAAL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++  M++ ++F   K     +   LE  G     +H N  Q  R++ L+ FK G ++++
Sbjct: 238 LNEPGMESVLVFSRTKHGADRIARKLESSGIKSATLHSNRTQNQRLRALAAFKAGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HV N+D P   E+Y+HRIGRTGRA   G A + V  ++   + +
Sbjct: 298 VATDIAARGIDVDGISHVINYDFPMTNEDYVHRIGRTGRANAVGDALSFVCPDEHGDLRS 357

Query: 360 IEKLIEK 366
           +E+ I +
Sbjct: 358 LERFIGR 364


>gi|224142804|ref|XP_002324737.1| predicted protein [Populus trichocarpa]
 gi|118481206|gb|ABK92554.1| unknown [Populus trichocarpa]
 gi|222866171|gb|EEF03302.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 194/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  TFDAMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     V   + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 101 QLDY---DVVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSA 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V K+D + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     V+ L  +++ L
Sbjct: 396 RFYNVTVEELPSNVADL 412


>gi|240279271|gb|EER42776.1| ATP-dependent RNA helicase DHH1 [Ajellomyces capsulatus H143]
 gi|325089541|gb|EGC42851.1| ATP-dependent RNA helicase DHH1 [Ajellomyces capsulatus H88]
          Length = 514

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 188/377 (49%), Gaps = 7/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 46  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 105

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                  ++ +    LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 106 ERTNPKNSKTQ---ALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLN 162

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   +++    V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 163 EAVHIIVGTPGRILDLASKGVADLSDCSTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 222

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F     R           T+            K+       L 
Sbjct: 223 MLFSATFPLIVKS----FKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 278

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 279 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQHNRNRVFHDFRNGVCRNLV 338

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 339 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRYNLYKI 398

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +   +  
Sbjct: 399 EQELGTEIQPIPQSIDK 415


>gi|225559536|gb|EEH07818.1| ATP-dependent RNA helicase DHH1 [Ajellomyces capsulatus G186AR]
          Length = 511

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 188/377 (49%), Gaps = 7/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 46  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 105

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                  ++ +    LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 106 ERTNPKNSKTQ---ALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLN 162

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   +++    V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 163 EAVHIIVGTPGRILDLASKGVADLSDCSTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 222

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F     R           T+            K+       L 
Sbjct: 223 MLFSATFPLIVKS----FKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 278

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 279 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQHNRNRVFHDFRNGVCRNLV 338

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 339 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRYNLYKI 398

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +   +  
Sbjct: 399 EQELGTEIQPIPQSIDK 415


>gi|119477499|ref|ZP_01617690.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
 gi|119449425|gb|EAW30664.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
          Length = 608

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 153/377 (40%), Positives = 221/377 (58%), Gaps = 8/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  V  AV   GY +P+PIQ  TIP +L   D+ G+AQTGTGKTA+F LP+L+
Sbjct: 8   SFTELALSAPVQKAVSIVGYEQPSPIQAATIPHLLNGDDLLGVAQTGTGKTAAFALPLLS 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++    +   P+ L+L PTRELA QVA+ F+ Y         L I  G     Q ++L+
Sbjct: 68  RIDL---KKNSPQVLVLAPTRELAIQVAEAFKTYASQMKGFHVLPIYGGQDMSGQLRQLK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  RG L ++ +  LV+DEAD ML MGFI  ++ I    P  RQ 
Sbjct: 125 RGAHVVVGTPGRVMDHLRRGSLNLDGLTGLVLDEADEMLRMGFIDDVEWILEHTPPKRQV 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++KV++ +L +PK + + T ++TA  IE  ++       K  A+ + L  
Sbjct: 185 ALFSATMPKPIRKVADRYLSDPKEVRIATDATTAPRIEQRYLIVNGFDRKLDAITRILEA 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   K     L   LE +G+S  A++G+++Q  R + ++  K+  + ++V
Sbjct: 245 DDFDAM--IIFVRTKTATAELAEKLEARGYSASALNGDMNQALRERTINRLKKKQLDIIV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV NFD+P   E Y+HRIGRTGRAGR GKA   VA  + + +  I
Sbjct: 303 ATDVAARGIDVERVSHVLNFDIPYDPEAYVHRIGRTGRAGREGKAILFVAPREKRLLHTI 362

Query: 361 EKLIEKKVDWLNGDLSS 377
           EK   + +  L  DL S
Sbjct: 363 EKSTRQTI--LPMDLPS 377


>gi|328870452|gb|EGG18826.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 507

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 137/413 (33%), Positives = 217/413 (52%), Gaps = 6/413 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+ P+++ A +  G+ KPT IQ ++IP  +   D+ G+AQTG+GKTA+F +P+L 
Sbjct: 83  TFDQLGMHPQIIEACVRMGFKKPTEIQRESIPHAIAGRDIIGLAQTGSGKTAAFAIPILQ 142

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    +     LIL PTRELA Q++  FE  G    +   +L+GG+    Q   L R
Sbjct: 143 QLLQSPQPLF---ALILSPTRELAFQISQQFEALGAVIGVKCGVLVGGMDVMQQAMVLAR 199

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR++ H  N     +  ++ LV+DEADR+L M F   I  I  ++P  R T
Sbjct: 200 KPHIIVGTPGRVMYHLENTKGFHLKALKFLVMDEADRLLSMDFEEEINKILKVIPKNRNT 259

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+ +  L NP +++V +   +                K        + 
Sbjct: 260 YLFSATMTSKVAKLQKASLVNPIKVQVASTKYSTVDTLVQQYCFIPYQHK--DCYLTYIL 317

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++ +  + I+F         L   L   G     I+GN+DQ  R+  L+ FK     ++V
Sbjct: 318 NELSGNSAIVFVATCAASNRLSVMLRNLGLGAIPINGNMDQTKRLASLNKFKSSVKNILV 377

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP VG V N+D+P  ++ Y+HR+GRT RAG+ G+A TLV + D++    I
Sbjct: 378 ATDVAARGLDIPSVGLVVNYDIPVNSKEYVHRVGRTARAGQSGRAITLVTQYDVEVYQRI 437

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           E  + KK++    + SS+   LE ++ A    + +     +     +R    Y
Sbjct: 438 EFALSKKLEEFPSESSSVLVFLEAVNEAARLASLEVKEDTRVMEDSERTGSAY 490


>gi|156089485|ref|XP_001612149.1| eukaryotic translation initiation factor 4A [Babesia bovis T2Bo]
 gi|154799403|gb|EDO08581.1| eukaryotic translation initiation factor 4A, putative [Babesia
           bovis]
          Length = 402

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 121/376 (32%), Positives = 204/376 (54%), Gaps = 5/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L+  ++  +   G+ +P+ IQ + I  +++ HD  G AQ+GTGKTA+F +  L 
Sbjct: 30  SFEALKLNEDLLRGIYSYGFERPSAIQQRGIKPIIENHDTIGQAQSGTGKTATFSIAALQ 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     V   + LIL PTRELA Q+       G    +     +GG        KL+ 
Sbjct: 90  LIDYS---VVSCQVLILAPTRELAQQIQKVVLALGDYLKVQCHACVGGTIVRDDVHKLKA 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D  ++  LL N I++ ++DEAD ML  GF   I  +   +P   Q  
Sbjct: 147 GVHMVVGTPGRVYDMIDKKALLTNKIKLFILDEADEMLSRGFKGQIHEVFRRMPPDVQVA 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +E+ +++  F+++PKRI V     T E I+  +V    +  K   L       
Sbjct: 207 LFSATMPNEILELTTKFMRSPKRILVKKDELTLEGIKQFYVMIDKEEYKFDTLCDL--YE 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   II+CN ++ V  L   ++++ F+V ++HG++ Q  R  I+  F+ G+ ++++ 
Sbjct: 265 SVTITQAIIYCNTRRKVDMLTSKMQERDFTVSSMHGDMSQNERDLIMREFRSGSTRVLIT 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   +NYIHRIGR+GR GR G A   +   D++ +  IE
Sbjct: 325 TDLLARGIDVQQVSLVINYDLPMSPDNYIHRIGRSGRFGRKGVAINFLTPMDVECMKNIE 384

Query: 362 KLIEKKVDWLNGDLSS 377
                +++ +  +++ 
Sbjct: 385 NYYNTQIEEMPAEIAE 400


>gi|139473559|ref|YP_001128275.1| DEAD box helicase family protein [Streptococcus pyogenes str.
           Manfredo]
 gi|134271806|emb|CAM30039.1| DEAD box helicase family protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 539

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 140/371 (37%), Positives = 222/371 (59%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +        + + L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  NKIRTNE---NIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  ++++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKAVILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ +++     T   ++  +V    Q             
Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKQMKPL 365


>gi|322708424|gb|EFZ00002.1| ATP dependent RNA helicase (Dhh1), putative [Metarhizium anisopliae
           ARSEF 23]
          Length = 489

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 114/377 (30%), Positives = 185/377 (49%), Gaps = 7/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +  L   ++  + +AG+ KP+PIQ + IP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 36  LEFENFALKRDLLMGIFEAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPAL 95

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +V   + LIL PTRELA Q +   +  GK+  + V +  GG        +L+
Sbjct: 96  ERI---NPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDILRLQ 152

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +    ++   + ++DEAD++L + F P I+ +    P  RQ 
Sbjct: 153 EPVHIVVGTPGRILDLAGKSVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQV 212

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F                 T+            K+       L 
Sbjct: 213 MLFSATFPLSVKD----FSDKNMVSPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 268

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q++R ++  +F+ G  + +V
Sbjct: 269 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMQQQARNRVFHDFRNGVCRNLV 328

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 329 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNI 388

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +   +  
Sbjct: 389 ERDLGTEIQPIPPSIDK 405


>gi|183222181|ref|YP_001840177.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912238|ref|YP_001963793.1| superfamily II DNA and RNA helicase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776914|gb|ABZ95215.1| Superfamily II DNA and RNA helicase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167780603|gb|ABZ98901.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 471

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 176/440 (40%), Positives = 241/440 (54%), Gaps = 16/440 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L   +  AV + GY KPTPIQI+ IPL+L  HD+ G AQTGTGKTA+F LPM+ 
Sbjct: 7   TFSDLKLDRYIQKAVAETGYTKPTPIQIQAIPLLLDNHDLLGCAQTGTGKTAAFALPMIH 66

Query: 62  ILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L   RA+     PR+L+L PTRELA QV ++F  YGK   +  A++ GG+    Q K +
Sbjct: 67  NLISTRAKPNPKQPRSLVLVPTRELAIQVHESFVLYGKYTQIRTAVIFGGVGQNPQAKAI 126

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVLI TPGR++D  N+  + + N+EI V+DEADRMLDMGFI  I+ I S +P  RQ
Sbjct: 127 ASGLDVLIATPGRLVDLMNQNLVSLKNLEIFVLDEADRMLDMGFIHDIRKIISYLPKRRQ 186

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSATM  E++K++ + L  P RI+V   SST E I    + T     K        L
Sbjct: 187 NLFFSATMPPEIEKLANSILVEPIRIDVTPVSSTVELISQSVMYTELADKKNL---LLHL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  IIF   K     +   L K G     IHGN  Q +R + L +F+ G  + +
Sbjct: 244 FKDKNFKKTIIFTKTKHGANKISELLNKSGIKTDVIHGNKSQSARQRALEDFRSGKNRAL 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+DI D+ HV N+++P   E Y+HRIGRT RAG++G A  +   ++   I  
Sbjct: 304 VATDLAARGIDIDDITHVINYEIPYVPETYVHRIGRTARAGKNGIAIAIAEADERSLIKD 363

Query: 360 IEKLIEKKVDWLNGD----------LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           IEK+I   +  ++ D           +   P L       +   R+       S+G +R 
Sbjct: 364 IEKVIGISIP-VDRDHPYHAARVESHTGKAPKLHGSGGGGNRGQRRPTQSGDSSSGRNRN 422

Query: 410 KKNYSSQKSHIPLKESEKIS 429
            +  S Q S+    +SEK  
Sbjct: 423 SQQNSKQNSNRSQGQSEKRK 442


>gi|261212516|ref|ZP_05926801.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
 gi|260838447|gb|EEX65103.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
          Length = 422

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 148/409 (36%), Positives = 229/409 (55%), Gaps = 11/409 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGL  +++  + D G V PT IQ + IP VLQ  DV   AQTGTGKTA+F LP++
Sbjct: 6   ITFSQLGLDSRLLNTLSDLGIVNPTLIQQQAIPHVLQGRDVLAGAQTGTGKTAAFGLPLI 65

Query: 61  TILEKGRARVRMPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                   +       I      PTRELA QV D+ + Y K  +L +  + GG   + Q 
Sbjct: 66  QRFIDQPWQREENSKEIRALVLVPTRELAQQVLDSLQAYAKGTDLKIVAVYGGTSMKVQL 125

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G D+LI TPGR+LDH +   L +  +E+LV+DEADRMLDMGF+P +Q +   +  
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSAT   +++ V+   +++P  ++V   +STAET+       Y    K+   L 
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPTEVQVTPSNSTAETV---QQMVYPVDKKRKRELL 242

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L      +  ++F   ++    L   L+  G    +I+G+  Q +R K L +FK G +
Sbjct: 243 AYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L++ ++   
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDETPQ 362

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           ++AIE+L+  ++  +WL G   S  P + + +  + +  R       K+
Sbjct: 363 LEAIERLLNTRLPQEWLKGFEPS--PEVREENSPRRSSGRSAEKRKMKA 409


>gi|218190304|gb|EEC72731.1| hypothetical protein OsI_06346 [Oryza sativa Indica Group]
          Length = 1382

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 218/379 (57%), Gaps = 2/379 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G  P+++  +  AG++ PTPIQ +T P+ LQ  D+  IA+TG+GKT  +++P  
Sbjct: 603 MTFEATGFPPEILQEIHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTLGYLIPAF 662

Query: 61  TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L + +      P  L+L PTRELA+Q+ D   K+G++  ++   L GG     Q ++L
Sbjct: 663 IHLRRYQNNPMLGPTVLVLAPTRELASQIQDEAVKFGRSSRVSCTCLYGGTSKGLQLREL 722

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGAD+++ TPGR+ D     K+ ++ +  LV+DEADRMLDMGF P I+ I   +P  RQ
Sbjct: 723 ERGADIVVATPGRLNDILEMRKISLHQVSFLVLDEADRMLDMGFEPQIRKIVDEIPRNRQ 782

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+++AT   E+ K++ + L++P ++ + +                     K   L+Q+L
Sbjct: 783 TLMYTATWPKEVTKIAGDLLKDPVQVNIGSIDELVANKSITQYVEVVPPLDKQRRLEQIL 842

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++Q+     IIFC+ KK   +       + F   +IHG+  Q  R  +L+ F+ G   ++
Sbjct: 843 RAQERGSKVIIFCSTKKMC-DQLARDIGRSFGAASIHGDKSQAERDNVLNQFRTGRAPIL 901

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G ++T  +++D K+   
Sbjct: 902 VATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKYAGD 961

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E     +  +L  +
Sbjct: 962 LVKVLEGANQHVPPELQEM 980


>gi|56119032|ref|NP_001007854.1| probable ATP-dependent RNA helicase DDX47 [Gallus gallus]
 gi|53130308|emb|CAG31483.1| hypothetical protein RCJMB04_6o10 [Gallus gallus]
          Length = 453

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 131/412 (31%), Positives = 213/412 (51%), Gaps = 12/412 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++  +  A    G+  PT IQ++ IP+ LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 26  SFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L     R+     L+L PTRELA Q+++ FE  G +  +  A+++G            +
Sbjct: 86  ALLDAPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAK 142

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      +    N     +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 143 KPHIIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKT 202

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++          SK        + 
Sbjct: 203 FLFSATMTKQVQKLQRAALKNPVKCAVSSKYQTVEKLQQ---YYIFIPSKFKDSYLVYIL 259

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 260 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILL 319

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GK+ T V + D++    I
Sbjct: 320 ATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 379

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           E LI KK+         +    E++  AQ     +   +  +  G  +R +N
Sbjct: 380 EHLIGKKLPAFPMQEEEVMMLTERVAEAQ-----RFARMELREQGEKKRSRN 426


>gi|297612409|ref|NP_001068490.2| Os11g0689400 [Oryza sativa Japonica Group]
 gi|77552592|gb|ABA95389.1| retrotransposon protein, putative, unclassified, expressed [Oryza
           sativa Japonica Group]
 gi|255680379|dbj|BAF28853.2| Os11g0689400 [Oryza sativa Japonica Group]
          Length = 1398

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 218/379 (57%), Gaps = 2/379 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G  P+++  +  AG++ PTPIQ +T P+ LQ  D+  IA+TG+GKT  +++P  
Sbjct: 604 MTFEATGFPPEILQEIHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTLGYLIPAF 663

Query: 61  TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L + +      P  L+L PTRELA+Q+ D   K+G++  ++   L GG     Q ++L
Sbjct: 664 IHLRRYQNNPMLGPTVLVLAPTRELASQIQDEAVKFGRSSRVSCTCLYGGTSKGLQLREL 723

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGAD+++ TPGR+ D     K+ ++ +  LV+DEADRMLDMGF P I+ I   +P  RQ
Sbjct: 724 ERGADIVVATPGRLNDILEMRKISLHQVSFLVLDEADRMLDMGFEPQIRKIVDEIPRNRQ 783

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+++AT   E+ K++ + L++P ++ + +                     K   L+Q+L
Sbjct: 784 TLMYTATWPKEVTKIAGDLLKDPVQVNIGSIDELVANKSITQYVEVVPPLDKQRRLEQIL 843

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++Q+     IIFC+ KK   +       + F   +IHG+  Q  R  +L+ F+ G   ++
Sbjct: 844 RAQERGSKVIIFCSTKKMC-DQLARDIGRSFGAASIHGDKSQAERDNVLNQFRTGRAPIL 902

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G ++T  +++D K+   
Sbjct: 903 VATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKYAGD 962

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E     +  +L  +
Sbjct: 963 LVKVLEGANQHVPPELQEM 981


>gi|254805204|ref|YP_003083425.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha14]
 gi|254668746|emb|CBA06600.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha14]
          Length = 457

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 159/447 (35%), Positives = 252/447 (56%), Gaps = 29/447 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +      +
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNL---LE 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 242 RLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           ++I++L   K+             +E+I+  +     +    P+K    + R++N     
Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRY--- 406

Query: 418 SHIPLKESEKISKLQQDIQENDADSLG 444
                 ES K  + +    EN A+  G
Sbjct: 407 ------ESAKAQREKNTRPENAANDAG 427


>gi|253686992|ref|YP_003016182.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753570|gb|ACT11646.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 625

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 135/378 (35%), Positives = 226/378 (59%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   SFADLGLNTSILNALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+ +    + +  G  ++ Q + L 
Sbjct: 67  NLKP---ELKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + +P   QT
Sbjct: 124 QGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F+++P+ + + +  +T   I   +         +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTVQGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  +
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|332293226|ref|YP_004431835.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171312|gb|AEE20567.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 644

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 125/371 (33%), Positives = 214/371 (57%), Gaps = 8/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPM 59
           M F +LGL+  ++ A+ D G+  P+ IQ + IP +L +  D+  +AQTGTGKTA+F  P+
Sbjct: 1   MTFDELGLNAPLLQAIADMGFETPSKIQEEAIPQLLAEDRDMVALAQTGTGKTAAFGFPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
           L  +++     +  + LI+ PTREL  Q+ +  + Y K+   + V  + GG   + Q ++
Sbjct: 61  LQNIDEN---SKTTQGLIIAPTRELCLQITNEMKLYSKHMKGVRVVAVYGGANIQEQARE 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           + RGA +++ TPGR+ D   R  + +  +   V+DEAD ML+MGF   I NI +  P  +
Sbjct: 118 ISRGAQIVVATPGRMQDMMRRRMVDITKLSYCVLDEADEMLNMGFYEDITNILADTPEDK 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            T LFSATM  E+ ++++ F+ NP  I   T     E  ++     +  +++      + 
Sbjct: 178 LTWLFSATMPREVSRIAKEFMVNPLEI---TVGHKNEGAKNVSHEYFVVHTRDRYQALKR 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   +     +IFC  K++   +   L + G++  A+HG++ Q  R  ++ +F+   IQ+
Sbjct: 235 LSDANPDIFSVIFCRTKRDTQKVAEQLIEDGYNAGALHGDLSQNQRDLVMKSFRNRQIQM 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+ HV N+ +P+  E Y HR GRTGRAG+ G +  +V K +++ I 
Sbjct: 295 LVATDVAARGIDVDDITHVVNYQLPDEIETYTHRSGRTGRAGKTGTSLVIVTKSEMRKIK 354

Query: 359 AIEKLIEKKVD 369
            +EK++ KK +
Sbjct: 355 QLEKILGKKFE 365


>gi|325132396|gb|EGC55089.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M6190]
 gi|325138385|gb|EGC60953.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           ES14902]
 gi|325142616|gb|EGC65008.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           961-5945]
 gi|325201879|gb|ADY97333.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240149]
 gi|325208368|gb|ADZ03820.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           NZ-05/33]
          Length = 457

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 157/447 (35%), Positives = 252/447 (56%), Gaps = 29/447 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +      +
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNL---LE 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 242 RLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           ++I++L   K+             +E+I+  +     +    P+K+   + R++N     
Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKTEMREPRQRNRY--- 406

Query: 418 SHIPLKESEKISKLQQDIQENDADSLG 444
                 ES +  + +    E  A+  G
Sbjct: 407 ------ESARAQREKNTRPETTANDAG 427


>gi|194753610|ref|XP_001959103.1| GF12227 [Drosophila ananassae]
 gi|190620401|gb|EDV35925.1| GF12227 [Drosophila ananassae]
          Length = 522

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 119/441 (26%), Positives = 199/441 (45%), Gaps = 12/441 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +   +   G    TPIQ   IP +L   D  G A+TG+GKT +F LP+L  
Sbjct: 9   FQSLGLRPWLAKQLTKLGLKGATPIQQNCIPAILSGRDCIGAAKTGSGKTFAFALPILEK 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PT ELA Q+++ F   G+   + V ++ GG     +++KL + 
Sbjct: 69  LSE---EPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMIESQKLMQR 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++  PGR+ DH         +    ++ +    +  G       I        +  L
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKTRQNL 185

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAET---IEHCFVATYAQYSKKCALLQQLL 239
           F +    +  K S  F  +   +E +  S  A      +   +              +  
Sbjct: 186 FFSATMKDFMKESSIFPISKDCLEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKY 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++   N +IF N KK    L  +L+        +HG + Q+ R+  LS FK   I+ +
Sbjct: 246 REENENANVMIFTNTKKYCQLLSMTLKNMDIDNVCLHGFMRQKERVAALSRFKSNHIRTL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           +A+D+AARGLDIP V  V N  +P   + YIHR+GRT RAGR G + ++     D++ + 
Sbjct: 306 IATDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLG 365

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           AIE+ I  K+     D       +E+I   Q N  R+ + +   +  FD R +NY  +  
Sbjct: 366 AIEEEINTKMTEHPID----QRMVERI-FMQVNVTRRESEMQLDNNDFDERAQNYRRKTW 420

Query: 419 HIPLKESEKISKLQQDIQEND 439
            +  K+ +++  L +  Q++ 
Sbjct: 421 IMEGKDPDEMEALYRKKQKDK 441


>gi|121635112|ref|YP_975357.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
 gi|120866818|emb|CAM10576.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
          Length = 483

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 157/447 (35%), Positives = 252/447 (56%), Gaps = 29/447 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 31  FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 90

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 91  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 150

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 151 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 210

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +      +
Sbjct: 211 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNL---LE 267

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 268 RLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 327

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 328 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 387

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           ++I++L   K+             +E+I+  +     +    P+K+   + R++N     
Sbjct: 388 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKTEMREPRQRNRY--- 432

Query: 418 SHIPLKESEKISKLQQDIQENDADSLG 444
                 ES +  + +    E  A+  G
Sbjct: 433 ------ESARAQREKNTRPETTANDAG 453


>gi|319794896|ref|YP_004156536.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS]
 gi|315597359|gb|ADU38425.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
          Length = 605

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 150/374 (40%), Positives = 230/374 (61%), Gaps = 8/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +L L+P ++ AV + GY  PTPIQ + IP VL+ HD+ G AQTGTGKTA+F LPML
Sbjct: 1   MNFDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPML 60

Query: 61  TILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L   R+          R L+L PTRELAAQV ++   YGK   L   ++ GG+    Q
Sbjct: 61  HKLTMSRSATNKFGGVGIRALVLTPTRELAAQVEESVRTYGKYLQLDSTVIFGGVGMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL++G D+L+ TPGR+LD   +G L ++ +++L++DEADRMLDMGFI  ++ I +LVP
Sbjct: 121 ISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q+LLFSAT +DE++ ++   L+NP+ I+V   ++T + I            K     
Sbjct: 181 KEKQSLLFSATFSDEIRDLAATLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKAL--- 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              + +++     ++F   K    ++   L K G    A+HGN  Q +R + L+ FK G 
Sbjct: 238 LAHIINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGD 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ +VA+D+AARG+DI ++ HV N+++PN +E+Y+HRIGRTGRAG  G+A + V  ++  
Sbjct: 298 IRALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCLDEEG 357

Query: 356 HIDAIEKLIEKKVD 369
            +  IE+  ++ + 
Sbjct: 358 FMQEIERFTKQTIP 371


>gi|154249323|ref|YP_001410148.1| DEAD/DEAH box helicase domain-containing protein [Fervidobacterium
           nodosum Rt17-B1]
 gi|154153259|gb|ABS60491.1| DEAD/DEAH box helicase domain protein [Fervidobacterium nodosum
           Rt17-B1]
          Length = 571

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 139/405 (34%), Positives = 218/405 (53%), Gaps = 8/405 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61
           F D GLS +++ A+   GY KPT IQ   +P  L    D+   AQTGTGKTA+F +P+L 
Sbjct: 20  FEDFGLSEEILLAIQKKGYEKPTEIQKIVLPYALSTDKDLIAQAQTGTGKTAAFGIPLLE 79

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +    + +I+ PTRELA Q+ +  +       + +  L GG   E Q K LE+
Sbjct: 80  RIDFKANK--FVKAIIVTPTRELALQIFEELKSLKGTKRVKITTLYGGQSLEKQFKDLEK 137

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGRI+DH NR  L ++++E LV+DEADRMLDMGF+  +  I       ++T 
Sbjct: 138 GVDIVVGTPGRIIDHLNRDTLDLSHVEYLVLDEADRMLDMGFLDDVLEIIKRTGENKRTF 197

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+  ++  F++    +       T E  E      +    K    L   +  
Sbjct: 198 LFSATMPKEIVDIARKFMKEYIHVSTVKDELTTENAEQ---LYFEVDEKDKLPLLCRIID 254

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +    GI+FC  K  V  +   L   G++   +HG+  Q  R ++L  F++  ++++V 
Sbjct: 255 MNPDFYGIVFCQTKLEVDEISKKLLDLGYNADGLHGDYSQYQRERVLDKFRKKQLRILVT 314

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI  + HV N+ VP   E Y+HRIGRTGRAG+ G A T V ++D  H   ++
Sbjct: 315 TDVAARGIDIDGLTHVINYSVPRDPEYYVHRIGRTGRAGKKGFAITFVTRDDYFHFARVK 374

Query: 362 KLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           +  + K+  D +      LN  LEK+     N  + +N + +++ 
Sbjct: 375 RFAKAKIIKDSIPQVEDILNRQLEKLLDTLKNAPKVSNELYKRAA 419


>gi|237727904|ref|ZP_04558385.1| ATP-dependent RNA helicase rhlB [Citrobacter sp. 30_2]
 gi|226910353|gb|EEH96271.1| ATP-dependent RNA helicase rhlB [Citrobacter sp. 30_2]
          Length = 422

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 138/411 (33%), Positives = 208/411 (50%), Gaps = 9/411 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKV+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVIEALENKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P T
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPT 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 TQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     I+F N K    ++  SL   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIVFANTKHRCEDIWGSLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
            AIE  I   +     +    ++ L  PL        N  R+    P+   
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGGAPRNRR 419


>gi|227496195|ref|ZP_03926501.1| superfamily II helicase [Actinomyces urogenitalis DSM 15434]
 gi|226834278|gb|EEH66661.1| superfamily II helicase [Actinomyces urogenitalis DSM 15434]
          Length = 762

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 147/403 (36%), Positives = 225/403 (55%), Gaps = 15/403 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   ++ AV D GYV PT IQ + IP++L   DV G+AQTGTGKTA+F LP+L
Sbjct: 122 VTFADLGLPADLLKAVTDMGYVTPTAIQREAIPVLLSGRDVVGVAQTGTGKTAAFGLPLL 181

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++     V+    L+L PTRELA Q A+              + +  G P+  Q   L
Sbjct: 182 DAVDARDGEVQ---ALVLAPTRELALQSAEAITDMASRSRGLDVVAVYGGAPYGPQIGAL 238

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA V++ TPGR++D  ++G L +  +   V+DEAD ML MGF   ++ I + +P  R+
Sbjct: 239 KSGAQVVVGTPGRVIDLIDKGALRLGAVRYFVLDEADEMLRMGFAEDVETIAASLPAERR 298

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM   +Q V+   L +P R+EV+  SST +T+   +        +        +
Sbjct: 299 TALFSATMPPAIQAVARQHLSDPARVEVSRQSSTVDTVHQTYAVVPF---RHKVGAVSRV 355

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  I+F   K    ++   L  +G    AI G++ QR R +++   + GT+ ++
Sbjct: 356 LATTEAEAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRSGTLDVL 415

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +G V NFDVP  AE Y+HRIGRTGRAGRHG+A T +  ++   +  
Sbjct: 416 VATDVAARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQ 475

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           IE+L   +++ +     +L  P    D+++H  A   +   Q+
Sbjct: 476 IERLTGTRLEEI-----TLPSPA---DVSRHRAATLLDKAAQR 510


>gi|49480463|ref|YP_039444.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49332019|gb|AAT62665.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 481

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 138/418 (33%), Positives = 234/418 (55%), Gaps = 15/418 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  LS +V  A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  ++  P  IE+     T + IEH     +    ++   L + + + 
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEH---TLFEVREEEKLSLLKDVTTI 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L +  +    IHG + Q +R  ++ +F++G  + +VA+
Sbjct: 240 ENPDSCIIFCRTQENVDHVYRQLNRVNYPCDKIHGGMVQENRFGVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE 
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEA 359

Query: 363 LIEKKV---------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            I   +         + + G  +       K  I +  +A  N  I +      ++KK
Sbjct: 360 YIGFTIRKVNAPSKEEVMKGKAAFEEKIHAKPTIKKDKNADINKGIMKLYFNGGKKKK 417


>gi|17136814|ref|NP_476927.1| DEAD box protein 45A [Drosophila melanogaster]
 gi|12643712|sp|Q07886|DDX49_DROME RecName: Full=Probable ATP-dependent RNA helicase Dbp45A;
           Short=DEAD box protein 45A
 gi|7303950|gb|AAF58994.1| DEAD box protein 45A [Drosophila melanogaster]
 gi|16185764|gb|AAL13957.1| LD47509p [Drosophila melanogaster]
          Length = 521

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 118/441 (26%), Positives = 201/441 (45%), Gaps = 12/441 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +V  +   G    TPIQ K IP +L   D  G A+TG+GKT +F LP+L  
Sbjct: 9   FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILER 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PT ELA Q+++ F   G+   + V ++ GG     +++KL + 
Sbjct: 69  LSE---EPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQR 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++  PGR+ DH         +    ++ +    +  G      +I        +  L
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLPKTRQNL 185

Query: 183 FSATMTDELQKVSENFL---QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           F +    +  K S  F       +  + +  ++     +   +              +  
Sbjct: 186 FFSATMKDFIKESSIFPIASDCFEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKY 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++   N +IF N KK    L  +L+        +HG + Q+ R+  LS FK   I+ +
Sbjct: 246 REENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIRTL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           +A+D+AARGLDIP V  V N  +P   + YIHR+GRT RAGR G + ++     D++ + 
Sbjct: 306 IATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLA 365

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           AIE+ I  K+     D       +E+I   Q N  R+ + +   +  FD R +NY  +  
Sbjct: 366 AIEEEINTKLTEHPID----QRMVERI-FMQVNVTRRESEMQLDNNDFDERAQNYRRKTW 420

Query: 419 HIPLKESEKISKLQQDIQEND 439
            +  K+ +++  L +  Q++ 
Sbjct: 421 IMEGKDPDQMEALYRKKQKDK 441


>gi|194434617|ref|ZP_03066873.1| ATP-dependent RNA helicase RhlB [Shigella dysenteriae 1012]
 gi|194417136|gb|EDX33249.1| ATP-dependent RNA helicase RhlB [Shigella dysenteriae 1012]
 gi|332084943|gb|EGI90125.1| ATP-dependent RNA helicase rhlB [Shigella dysenteriae 155-74]
          Length = 421

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 137/413 (33%), Positives = 206/413 (49%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PT ELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRKVNQPRALIMAPTHELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGAPRNRRRSG 421


>gi|93006205|ref|YP_580642.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5]
 gi|92393883|gb|ABE75158.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5]
          Length = 552

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 141/370 (38%), Positives = 226/370 (61%), Gaps = 6/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLG++  ++ A+  +GY  PTPIQ + IP  L   D+   AQTG+GKTA+FV+P+L
Sbjct: 38  VTFTDLGIAKPILTALDRSGYTNPTPIQAQAIPFALAGRDLLLSAQTGSGKTAAFVIPVL 97

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL-IGGIPFEAQNKKL 119
             L +  +  ++ + LIL PTRELA QV D+   Y K+      +  +GG P+  Q   L
Sbjct: 98  DRLSRATSFDKLTKALILTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGAPYNGQITAL 157

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G  V++ TPGR+LDH N G++ ++++EILV+DEADRMLDMGF   I +I    P  RQ
Sbjct: 158 KKGVQVIVATPGRLLDHINAGRVDLSSLEILVLDEADRMLDMGFADDISDILRAAPTDRQ 217

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++ SAT    + K++ +F +NP+R+ +   S+  E   +       +       L   +
Sbjct: 218 TIMCSATWDGPVGKIAASFTKNPERVSIKVESAHIEEKVYYCDDFDHKNR-----LLDKI 272

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  M+  IIF   K++   L   L++ G     +HG++ Q  R +I+ + + G ++++
Sbjct: 273 VCQQDMEQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKVKIL 332

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + HV N+D+P + E+Y+HRIGR GRAGR G A +L + +D   ++A
Sbjct: 333 VATDVAARGLDIPAISHVINYDLPRQTEDYVHRIGRCGRAGRTGIAISLCSMDDRPQLNA 392

Query: 360 IEKLIEKKVD 369
           I + +++K++
Sbjct: 393 INRYLDRKME 402


>gi|325104041|ref|YP_004273695.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324972889|gb|ADY51873.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 451

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 156/442 (35%), Positives = 242/442 (54%), Gaps = 16/442 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L   +  A+    Y  PTPIQ + IPL+LQR D+ G AQTGTGKTA+F +P+L 
Sbjct: 3   SFETLNLIQPIQKALKALNYQTPTPIQAQAIPLILQRKDLLGCAQTGTGKTAAFAIPILQ 62

Query: 62  ---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 K   +    + LI+ PTRELA Q+ D+F  YGKN  L  A++ GG+  ++Q   
Sbjct: 63  LLDEDLKKNHQKNTIKALIVTPTRELAIQIGDSFSDYGKNLRLKHAVIFGGVNQKSQVDA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G D+L+ TPGR+LD  ++  L + +I + V+DEADRMLDMGFI  ++ I +++P  R
Sbjct: 123 LQKGVDILVATPGRLLDLMHQKHLSLKHINLFVLDEADRMLDMGFINDVKKIIAVLPQHR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+L FSATM   +QK+SE  L++P ++EV   SSTA+TI                     
Sbjct: 183 QSLFFSATMPPVIQKLSEEILKSPVKVEVTPVSSTADTINQTVFFVDKNNKNDL---LLH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     + + ++F   K     +  +L KQ     AIHGN  Q +R + L +FK   I++
Sbjct: 240 ILKDQLLDSVLVFTRTKHGADRVVKTLAKQHIKSAAIHGNKSQNARQRALDDFKTKAIRV 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + +V N+++PN  E Y+HRIGR+GRAG  G A +    ++   + 
Sbjct: 300 LVATDIAARGIDIDSLKYVINYEIPNIPETYVHRIGRSGRAGAEGIAISFCDVDEKPFLK 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK+I K V     +      P+E         A++ +    K      RK   +  K+
Sbjct: 360 DIEKIIGKSVPLGEDN----PFPMENF------VAKETSKKQGKKPQQQARKPEGNKPKA 409

Query: 419 HIPLKESEKISKLQQDIQENDA 440
               K++++     ++ + + +
Sbjct: 410 AHKGKDNDRKENNWKNKERSFS 431


>gi|301056918|ref|YP_003795129.1| ATP-dependent RNA helicase [Bacillus anthracis CI]
 gi|300379087|gb|ADK07991.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 481

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 138/419 (32%), Positives = 234/419 (55%), Gaps = 15/419 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++  LS +V  A++  GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFSNYALSKEVRRALIGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++++S  ++  P  IE+     T + IEH     +    ++   L + + +
Sbjct: 182 LFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEH---TLFEVREEEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++  +    IHG + Q  R  ++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIE 358

Query: 362 KLIEKKV---------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
             I   +         + + G  +       K  I +   A  N  I +      ++KK
Sbjct: 359 AYIGFAIPKANAPSKEEVMKGKAAFEEKIQAKPTIKKDKSADINKGIMKLYFNGGKKKK 417


>gi|157734244|gb|ABV68940.1| ATP-dependent DEAD-box helicase [Apocynum venetum]
          Length = 447

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 191/377 (50%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KPTPIQ + +  ++Q  D    AQTG+GKT+   L +  
Sbjct: 33  SFNGMGLKEDLIRGIYAYGFEKPTPIQQRAVMPLIQGRDAIAQAQTGSGKTSMIALSVCQ 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           + +     V+    LIL PTRELA Q        G   N+   + IGG        KLE+
Sbjct: 93  VADTSVRDVQA---LILSPTRELATQTERVLIALGDRININAHVCIGGNSVGEDIHKLEK 149

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR++D   R  L    I+ILV+DEADRML  GF   I +    +P   Q  
Sbjct: 150 GVHVVSGTPGRLIDMIKRRTLRTRVIKILVLDEADRMLGRGFRDNIYDAYRYLPPELQVC 209

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L +AT+  EL +++  F+ +P +I       T + I+  FVA   +  K   L    +  
Sbjct: 210 LITATLPHELIEMTSKFMTDPVKILAKREDLTLDGIKQWFVAVEREDWKFDTLCD--IYD 267

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   +    F+   +H ++  + R  I++ FK G  + ++ 
Sbjct: 268 SLTISLAVIFCNTRRKVDWLTDKMHSNQFTASVMHSDMPNKEREVIMNEFKGGATKALIT 327

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  VG V N+D+P   E YIHRIGRTG+ GR       V  EDI+ +  IE
Sbjct: 328 TDVWARGIDVQQVGIVINYDLPQNRELYIHRIGRTGKFGRKSAVINFVKSEDIRLLRDIE 387

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +   ++ L
Sbjct: 388 QYYTSQIDDMPMQVAEL 404


>gi|270159019|ref|ZP_06187675.1| cold-shock DEAD box protein A [Legionella longbeachae D-4968]
 gi|289166145|ref|YP_003456283.1| ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A)
           [Legionella longbeachae NSW150]
 gi|269987358|gb|EEZ93613.1| cold-shock DEAD box protein A [Legionella longbeachae D-4968]
 gi|288859318|emb|CBJ13253.1| putative ATP-dependent RNA helicase deaD (cold-shock DEAD-box
           protein A) [Legionella longbeachae NSW150]
          Length = 569

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 158/458 (34%), Positives = 249/458 (54%), Gaps = 20/458 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA    S  +  A+ D  +  P+PIQ +TIPL+L+  D   +AQTGTGKTA+F LP+L 
Sbjct: 7   SFAAFNFSDALNRALEDMKFTTPSPIQAQTIPLLLEGRDAIALAQTGTGKTAAFALPILQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFE-KYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L      V   + LIL PTRELA QVA+ FE       ++TVA+L GG  +  Q K+L 
Sbjct: 67  NLSSS---VHGTQALILAPTRELAIQVAEQFELLSANQRSITVAVLCGGQEYGRQLKQLR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRILDH ++G LL++N+   ++DEAD ML MGFI  I+ I S +P  +Q 
Sbjct: 124 AGAQIVVGTPGRILDHLDKGTLLLDNLRTFILDEADEMLRMGFIEDIETIMSKLPEKKQI 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   +++++  +L NP  IE+   ++T ++IE  F+                + 
Sbjct: 184 GLFSATMPHRIRQIANTYLHNPAAIEIRAETATVKSIEQRFLFASGHQK---YDALLRVL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +  +  I+F   K +   +   L++QG    AIHG+I Q  R +I++ F++G I ++V
Sbjct: 241 AVEDYQGVIVFVRTKSSTEEVAEILQQQGLRAMAIHGDITQALRERIIAQFRQGAIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV N+D+P+  E Y+HRIGRTGRAGR G A   V  ++ + I +I
Sbjct: 301 ATDVAARGLDVERVTHVINYDLPHDNETYVHRIGRTGRAGRSGVAILFVTPKEGRLITSI 360

Query: 361 EKLIEKKVDWL-------------NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           E+   +++  +                ++++   LE   I  +    +       ++  D
Sbjct: 361 ERHTRQRITKVAVPTDHMIHVTRQQRFMANITARLEHEHIISYKRIIEEYIKENDASAVD 420

Query: 408 RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGF 445
                       +P ++ + + K  + I+EN  +  G 
Sbjct: 421 VAAALALLLHKDMPWQKEQALPKESRSIKENRPERNGK 458


>gi|255093167|ref|ZP_05322645.1| ATP-dependent RNA helicase [Clostridium difficile CIP 107932]
 gi|255314909|ref|ZP_05356492.1| ATP-dependent RNA helicase [Clostridium difficile QCD-76w55]
 gi|255517583|ref|ZP_05385259.1| ATP-dependent RNA helicase [Clostridium difficile QCD-97b34]
 gi|260683781|ref|YP_003215066.1| ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260209944|emb|CBA63924.1| ATP-dependent RNA helicase [Clostridium difficile CD196]
          Length = 497

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 137/431 (31%), Positives = 234/431 (54%), Gaps = 11/431 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L+ K++ ++   GY  P+ +Q + IP +L+  ++   ++TG+GKTASF +P+  
Sbjct: 4   TFEKFKLNEKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLCE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +      ++    LI+ PTRELA QV D     G+   +  + + G    + Q  +L++
Sbjct: 64  NINVDCNNIQA---LIVVPTRELALQVKDEISDIGRLKKVRCSAIFGKQSIKDQIAELKQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH N+G + + N++ LVIDEAD+M + GF+  ++ I   +P  +   
Sbjct: 121 RVHIVVATPGRILDHINKGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVS 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCALLQQLLQ 240
           LFSAT+ +E++ + E ++ +   I +    S              + + ++  +L + L 
Sbjct: 181 LFSATIDEEIKYICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYILLKELI 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  K+ IIFCN K+ V  L + + K+GF +  +H ++ Q  R+ ++ +FK     ++V
Sbjct: 241 YSENPKSVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQKFNILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +SD+A+RG+ I D+  V N+DVP   ENYIHRIGRTGR G  GKA T+V ++D K+I+ I
Sbjct: 301 SSDVASRGIHIDDISLVINYDVPQDKENYIHRIGRTGRKGNSGKAITIVTEKDEKYIENI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  I  KV+ L  D+        KI   +++       I +K +   +  KN S +   I
Sbjct: 361 ETYIGYKVNELK-DIEKSRITHGKILFEEYSKG-----ILKKVSKRKKVDKN-SYKSKDI 413

Query: 421 PLKESEKISKL 431
            L    ++ KL
Sbjct: 414 KLNIESEVVKL 424


>gi|119944600|ref|YP_942280.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119863204|gb|ABM02681.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 403

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 154/409 (37%), Positives = 237/409 (57%), Gaps = 7/409 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F+ L LS  +V AV + GY  PTPIQ + IP++L   ++   AQTGTGKTASFVLP+ 
Sbjct: 1   MLFSTLKLSDPIVKAVTELGYQTPTPIQEQAIPVILAGKNLIAAAQTGTGKTASFVLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +++    R +  R LIL PTRELA QV +N  +YGK   L    + GG+  E Q ++L
Sbjct: 61  QNLIDAPAVRAKRIRVLILTPTRELAVQVENNIAQYGKYLPLKSMAMYGGVDSEPQKQQL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + R  +  + +E+LVIDEADRMLDMGF+P I  I   +P  RQ
Sbjct: 121 IEGVDILVATPGRLLDMYTRRAIHFDELEVLVIDEADRMLDMGFLPDINKIVERLPLQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++D+++ +++  + +   I ++    TA  IE C ++                
Sbjct: 181 NLLFSATLSDQVRFLAKTAITDAVEIAISPDYRTAPQIEQCLISVDKDNKSALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  +  +IF   K+    L   LEK+G    AIH    Q  R ++L++FK G +  +
Sbjct: 238 IIENQWQQALIFIETKRGAAKLVSQLEKRGIKAEAIHSGRSQAVRTQLLADFKSGQLNFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P+ A++Y+HRIGRTGRAG  G+A + V+++D +++ A
Sbjct: 298 VATGIAARGIDIDSLARVVNYDLPDEADDYVHRIGRTGRAGVSGEAISFVSRDDFRNLCA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           IE  + + +     D     P LE +  +   +A K    P++    ++
Sbjct: 358 IENRLGEFITRKKID--GFEPKLE-VPASNVAYAPKKPQKPRRHNAKNK 403


>gi|322385798|ref|ZP_08059442.1| ATP-dependent RNA helicase DeaD [Streptococcus cristatus ATCC
           51100]
 gi|321270536|gb|EFX53452.1| ATP-dependent RNA helicase DeaD [Streptococcus cristatus ATCC
           51100]
          Length = 524

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 146/373 (39%), Positives = 227/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQA---LIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N+IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++                  
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLLII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|54310595|ref|YP_131615.1| ATP-dependent RNA helicase RhlB [Photobacterium profundum SS9]
 gi|56749602|sp|Q6LLL5|RHLB_PHOPR RecName: Full=ATP-dependent RNA helicase rhlB
 gi|46915038|emb|CAG21813.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Photobacterium
           profundum SS9]
          Length = 437

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 136/428 (31%), Positives = 207/428 (48%), Gaps = 9/428 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL P V+  +   G+   TPIQ   +P+VL   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADLGLEPTVLEGLDAQGFHYCTPIQALALPVVLTGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +   PR +I+ PTRELA Q+ ++      +  L   L  GG  +E Q K
Sbjct: 70  YLLLNPASDERKTNQPRAIIMAPTRELAIQIYNDAAPLLASTGLKAGLAYGGEAYEKQQK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
               G D+LI T GRI+D + +  + + +I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VFAEGVDILIGTCGRIIDFYKQRVIDLASIQVVVLDEADRMFDLGFIKDIRFLFRRMPAP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +  L    + T   +     F       E        +T        +   +++   L Q
Sbjct: 190 KARLNMLFSATLSYRVKELAFEHMNS-PESVVVEPNQKTGHLIQEELFYPSNQEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L      V  ++G++ Q+ R++IL  F +G I 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEDIWGHLAADNHRVGLLNGDVPQKKRVRILEQFTQGDID 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HV+N+D+P+ AE+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHIPQVTHVYNYDLPDDAEDYVHRIGRTGRAGESGSSISFACEEYAINL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE  IE  +     +    L  L  PL      +    R+ N   Q       R  N 
Sbjct: 369 PAIETYIEHPIPLSKYNSEALLDELPAPLRLQRTPRQGGNRRPNGNRQGQGQSRPRNNNR 428

Query: 414 SSQKSHIP 421
              +S   
Sbjct: 429 RHPQSQKQ 436


>gi|311255076|ref|XP_003126098.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Sus
           scrofa]
          Length = 801

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 206/379 (54%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 243 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 302

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 303 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 362

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 363 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 422

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL++  +I V     +A       V    +  K   L+Q + +
Sbjct: 423 LMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 482

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 483 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 542

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    
Sbjct: 543 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 602

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E+    +N  L  L
Sbjct: 603 LIKVLEEANQAINPKLMQL 621


>gi|301757526|ref|XP_002914626.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
           DDX17-like [Ailuropoda melanoleuca]
          Length = 775

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 206/379 (54%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 217 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 276

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 277 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 336

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 337 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 396

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL++  +I V     +A       V    +  K   L+Q + +
Sbjct: 397 LMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 456

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 457 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 516

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    
Sbjct: 517 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 576

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E+    +N  L  L
Sbjct: 577 LIKVLEEANQAINPKLMQL 595


>gi|256840789|ref|ZP_05546297.1| ATP-dependent RNA helicase [Parabacteroides sp. D13]
 gi|298376614|ref|ZP_06986569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_19]
 gi|301309869|ref|ZP_07215808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           20_3]
 gi|256738061|gb|EEU51387.1| ATP-dependent RNA helicase [Parabacteroides sp. D13]
 gi|298266492|gb|EFI08150.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_19]
 gi|300831443|gb|EFK62074.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           20_3]
          Length = 426

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 139/428 (32%), Positives = 227/428 (53%), Gaps = 9/428 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   V+  + D  + + TP+Q  TIP++L+  D+   AQTGTGKTA++VLP++
Sbjct: 1   MRFDELDLEDAVLDGLYDMNFDETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG----GIPFEAQN 116
             L KG         +I+ PTRELA Q+    + +        A+ +     GI +E Q 
Sbjct: 61  NELSKGCHPTDAVNAVIMAPTRELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQK 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + LE GAD++I TPGR+L H   G + ++ +   V+DEADRMLDMGF   I  +   +P 
Sbjct: 121 RGLEMGADIVIATPGRLLSHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPP 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             QT++FSATM  +++ +++  L++P+ +++         ++  ++    Q  K    + 
Sbjct: 181 YCQTIMFSATMPPKIRTLAKTILKDPEEVKIAISRPPESIMQTAYICYDPQKLK----IL 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q L +Q   +  IIF + K  V  L  +L++  F+V A+H +++Q  R +++  FK G I
Sbjct: 237 QDLFTQSRPQRVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIK 355
            ++VA+D+ ARG+DI D+  V NFD+P+  E+Y+HRIGRT R     G A T V+ ++  
Sbjct: 297 DILVATDVVARGIDINDIKLVVNFDIPHDPEDYVHRIGRTARGTNGEGLAITFVSIDEQA 356

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
               IE  +EK+V  +         PL + +    N   +  P   +  G     +  + 
Sbjct: 357 QFKRIEDFLEKEVYKIPVSPEFGEVPLYEPEKYGMNKRGRGRPRKSEDKGSSSSPQKRNM 416

Query: 416 QKSHIPLK 423
                P K
Sbjct: 417 GHRGRPKK 424


>gi|194226836|ref|XP_001916530.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Equus
           caballus]
          Length = 791

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 206/379 (54%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 235 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 294

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 295 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 354

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 355 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 414

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL++  +I V     +A       V    +  K   L+Q + +
Sbjct: 415 LMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 474

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 475 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 534

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    
Sbjct: 535 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 594

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E+    +N  L  L
Sbjct: 595 LIKVLEEANQAINPKLMQL 613


>gi|148613856|ref|NP_001091974.1| probable ATP-dependent RNA helicase DDX17 isoform 3 [Homo sapiens]
          Length = 731

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 206/379 (54%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 173 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 232

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 233 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 292

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 293 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 352

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL++  +I V     +A       V    +  K   L+Q + +
Sbjct: 353 LMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 412

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 413 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 472

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    
Sbjct: 473 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 532

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E+    +N  L  L
Sbjct: 533 LIKVLEEANQAINPKLMQL 551


>gi|62088770|dbj|BAD92832.1| DEAD box polypeptide 17 isoform p82 variant [Homo sapiens]
          Length = 737

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 206/379 (54%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 175 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 234

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 235 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 294

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 295 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 354

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL++  +I V     +A       V    +  K   L+Q + +
Sbjct: 355 LMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 414

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 415 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 474

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    
Sbjct: 475 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 534

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E+    +N  L  L
Sbjct: 535 LIKVLEEANQAINPKLMQL 553


>gi|38201710|ref|NP_006377.2| probable ATP-dependent RNA helicase DDX17 isoform 1 [Homo sapiens]
 gi|110611789|gb|AAH00595.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
          Length = 729

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 206/379 (54%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 173 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 232

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 233 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 292

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 293 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 352

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL++  +I V     +A       V    +  K   L+Q + +
Sbjct: 353 LMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 412

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 413 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 472

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    
Sbjct: 473 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 532

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E+    +N  L  L
Sbjct: 533 LIKVLEEANQAINPKLMQL 551


>gi|113477200|ref|YP_723261.1| DEAD/DEAH box helicase-like [Trichodesmium erythraeum IMS101]
 gi|110168248|gb|ABG52788.1| DEAD/DEAH box helicase-like [Trichodesmium erythraeum IMS101]
          Length = 495

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 128/373 (34%), Positives = 211/373 (56%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LG+S +    +   G+ +PTPIQ + IP +L+  D+ G AQTGTGKTA+F LP+L
Sbjct: 3   LSFASLGISEERANHLETIGFTEPTPIQAQAIPPLLEGKDIVGQAQTGTGKTAAFSLPIL 62

Query: 61  TILEKGRARVR----MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             ++     V+     P   +     E   Q      K      L V  + GG   E Q+
Sbjct: 63  EQIDIDTNAVQALILTPTRELALQVTEAIRQFTGINSKGPTKRRLFVLTVYGGQSIERQS 122

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++L++G  +++ TPGRI+D  NR  L +++++++V+DEAD ML MGFI  ++ I    P 
Sbjct: 123 QRLQKGVHIVVGTPGRIIDMLNRNSLKLDHLKMMVLDEADEMLSMGFIQDVEKILEAAPA 182

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT  FSATM   ++K+   +LQ+P  ++V    +T + I          +SK      
Sbjct: 183 ERQTAFFSATMDYSIRKLVNKYLQSPVTVKVAQQKTTPKRITQTVYILPRGWSK--GKAL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q +   +  +  +IF   ++    L + L+  G SV   HGN++Q  R ++L+ F+   +
Sbjct: 241 QPILELEDPEAALIFVRTRQAAAELTNQLQSAGHSVDEYHGNLNQSQRERLLTRFRNQQV 300

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLD+  + HV N+D+P+  ++Y+HRIGRTGRAGR G A +L+   D + 
Sbjct: 301 RWVVATDIAARGLDVDHLTHVINYDLPDSVDSYVHRIGRTGRAGREGTAISLIHPVDKRK 360

Query: 357 IDAIEKLIEKKVD 369
           +  IE+ + ++++
Sbjct: 361 LRLIERHLRQRLN 373


>gi|302340274|ref|YP_003805480.1| DEAD/DEAH box helicase [Spirochaeta smaragdinae DSM 11293]
 gi|301637459|gb|ADK82886.1| DEAD/DEAH box helicase domain protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 541

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 128/468 (27%), Positives = 226/468 (48%), Gaps = 19/468 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   V+  + DAG+    P+Q  T+   LQ  DV   +QTG+GKTA+F++ + 
Sbjct: 1   MKFEEFNLHEDVLAGIKDAGFEACMPVQEATLKETLQGKDVTVQSQTGSGKTAAFLVTIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                 +   R   T+I+ PTRELA Q+ D  +  G +  + +    GG+ ++ Q + L+
Sbjct: 61  QRWCTTKPEERR-STMIISPTRELAVQIEDEAKLLGAHMGMNIGCFYGGVGYKQQEEALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+ I TPGR++D     K+    I  +VIDEADR+ DMGF P I+ +  ++    + 
Sbjct: 120 KGVDLYIGTPGRLIDFGQNRKIDFTTIGTVVIDEADRLFDMGFYPDIRRMLKMMGPREKR 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +    + T   + ++  +      +EV+         E      + +  KK +L+   L 
Sbjct: 180 MTMLFSATLGTKVLNVAWEHMNMPVEVSIEPEHITVREITQELYHVEGEKKFSLML-GLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    N IIF N K   V +   L + G++   + G++ Q+ R+  +   K G I+ +V
Sbjct: 239 KKYDPPNAIIFTNMKVTAVEVAKRLSRNGYAAKFLMGDLPQKKRLSTIDRVKHGEIRFLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL + D+  V N+D+P   E+Y+HRIGRT RAG+ G+A TL  +  +  ++ I
Sbjct: 299 ATDVAARGLHVDDLAMVINYDIPEDPESYVHRIGRTARAGKSGRAITLACERYVYGLEPI 358

Query: 361 EKLIEKKVD--------WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF------ 406
           E+L+E+K+         +L    + ++   E    +      K   +PQ + G       
Sbjct: 359 EQLLEQKIPVEWADDALFLEDKSAGIDFRSEYRRASSSGTRSKGRAVPQGTKGRRKDSGG 418

Query: 407 ---DRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
               R + + + ++S    + S +  +     +++           PA
Sbjct: 419 RDTHRGQASATPRRSAASPQRSNETGRRSNQTKKHSGPKSRSNNRKPA 466


>gi|300772029|ref|ZP_07081899.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760332|gb|EFK57158.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 450

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 154/413 (37%), Positives = 231/413 (55%), Gaps = 6/413 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D   + +++ A+ +AGY  PT IQ K I  VL   D+ GIAQTGTGKTA+FVLPML 
Sbjct: 4   SFEDFKFNKQILNAISEAGYSVPTEIQQKAITPVLAGQDIMGIAQTGTGKTAAFVLPMLM 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+  + +    R LIL PTRELA Q+ ++ + + K  +L   +L GG+  + Q + LE+
Sbjct: 64  KLKYAQGKDM--RALILSPTRELAMQIEEHIQLFSKYLDLRTVVLYGGLGPKTQIENLEK 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR LD +  G + + +++ LV+DEAD+M+DMGFI  I  I  +VP  RQ L
Sbjct: 122 GVDIIVATPGRFLDLYLEGHINVKSLKFLVMDEADKMMDMGFISKIHRILEVVPRKRQNL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM++ ++K++ +FL  P  IEV   ++ A+T++        Q +K   L   L   
Sbjct: 182 LFSATMSELVRKIAGDFLAFPTVIEVTEQATPAKTVQQAVYKVPNQKTKLNLLQHLLKDD 241

Query: 242 QDTMKNGIIFCNQK-KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   +  +    +   + V      +     V  IH N  Q +R+  ++ FKEG I+++V
Sbjct: 242 ESFHRLIVFCKTKTVADNVFHFLERKYGTEQVRVIHANKGQNTRINSINAFKEGNIRILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ +V HV NF+VP   E+Y+HRIGRTGRA   G A T     +  ++  I
Sbjct: 302 ATDVAARGLDVSNVSHVINFEVPIVIEDYVHRIGRTGRAFNEGDAITFSNPAEDYYVRKI 361

Query: 361 EKLIEKKVDWLNGDLSSLNPP---LEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           EKLI + +  L              E+  IA+    +K    P     F  +K
Sbjct: 362 EKLIRQSIPVLEIPEEVFVEKTGFEERQAIAREIDNQKKKDDPDFKGAFHEKK 414


>gi|121608317|ref|YP_996124.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121552957|gb|ABM57106.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 486

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 179/472 (37%), Positives = 256/472 (54%), Gaps = 19/472 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L+  +  AV + GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L 
Sbjct: 4   SFSNLMLAEPLARAVAEMGYTAMTPIQAQAIPVVLTGQDVMGAAQTGTGKTAAFSLPLLQ 63

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L +  +    P        +L PTRELA QVA     Y ++  L   ++ GGI  + Q 
Sbjct: 64  RLLRHESSSASPARHPVRALVLLPTRELADQVARQIALYARHTKLRSTVVFGGIDMKPQT 123

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P 
Sbjct: 124 LELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPK 183

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R TLLFSAT + E+++++ ++L  P  IEV  P++TA T+E  F +      ++     
Sbjct: 184 ERTTLLFSATFSPEIRRLASSYLHQPVTIEVARPNATAATVEQRFYSANDDDKRRA---I 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             +     +K   IF N K     L  SLE++G    A+HG+  Q  R+K L  FK G +
Sbjct: 241 HQVLRTRGLKQAFIFVNSKLGCARLARSLEREGLRTAALHGDRSQDERLKALQAFKSGDV 300

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+V +D+AARGLDI DV  VFNFDVP  AE+Y+HRIGRTGRAG  G A TLV+  D + 
Sbjct: 301 DLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSGSDARL 360

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD--RRKKNYS 414
           +  IEKLI KK D L       + P  +I+  +    + +       TG    R ++  S
Sbjct: 361 VADIEKLIGKKTD-LEAIEYDEDRPRGRINDGRRAWRQDDETGHPCDTGSPATRERREPS 419

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGF--------RGNMPAFMLPKNR 458
              S  P  +    +K  +           +        RG++ A + PK  
Sbjct: 420 RGMSAAPAAQDPFFAKPYEPDSAAATAPSAWESVARPPVRGSLSANIKPKRH 471


>gi|326202741|ref|ZP_08192609.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325987325|gb|EGD48153.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 414

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 152/413 (36%), Positives = 233/413 (56%), Gaps = 6/413 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   +  A++  GY  PT IQ +TIPL+L+  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MLFDELNLISPIQKALMAEGYTAPTDIQKQTIPLLLEGKDLVGCAQTGTGKTAAFAIPIL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +    ++    +R  + LIL PTRELA Q+ ++F  YG+   L  +++ GG+  + Q  
Sbjct: 61  QMLSVEQRDSKELRRIKALILTPTRELAVQIGESFTVYGQYLGLKNSVIFGGVSQKPQTD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI TPGR+LD  N+  + +++I+  V+DEADRMLDMG +  ++ I S +P  
Sbjct: 121 ALEEGVDILIATPGRLLDLINQKYINLHHIKFFVLDEADRMLDMGLVADVKRIISHLPKI 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSATM  ++ K+ ++ L +P ++ V   SST + IE        +      LL  
Sbjct: 181 RQTMLFSATMPPDVSKLIDSILTDPVKVAVTPISSTVDIIEQAVYFVGKK---DKKLLLT 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    ++ + ++F   K     +   L K      AIHGN  Q +R + L+NFK+   +
Sbjct: 238 QLLKNKSITSALVFSRTKHGADKIVKELAKVRIHAEAIHGNKSQGARQRALNNFKDKKTR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+  + +V N+D+PN  E Y+HRIGRTGRAG  G A +    ++  ++
Sbjct: 298 VLVATDIAARGIDVEGLSYVINYDLPNIPETYVHRIGRTGRAGLGGVALSFCDADEKPYL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
             IEKLI K +  +     +L          +   A    P P      +RRK
Sbjct: 358 KDIEKLISKSIPVIEDHPYTLTITEPAEHKDKTRKAVGGKPDPNGYFRSNRRK 410


>gi|27229058|ref|NP_080636.2| probable ATP-dependent RNA helicase DDX47 [Mus musculus]
 gi|52782790|sp|Q9CWX9|DDX47_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
           Full=DEAD box protein 47
 gi|26345792|dbj|BAC36547.1| unnamed protein product [Mus musculus]
 gi|26368455|dbj|BAB26843.2| unnamed protein product [Mus musculus]
 gi|66365081|gb|AAH95944.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
 gi|124297422|gb|AAI32243.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
 gi|124298172|gb|AAI32245.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
 gi|148678592|gb|EDL10539.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_b [Mus
           musculus]
          Length = 455

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 146/433 (33%), Positives = 233/433 (53%), Gaps = 7/433 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++  +  A    G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 25  TFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K      ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++          SK        + 
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ---YYLFIPSKFKDTYLVYIL 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI KK+         +    E+++ AQ     +     +K         +   ++  I
Sbjct: 379 EHLIGKKLPVFPTQDEEVMMLTERVNEAQRFARMELREHGEKKKRKREDAGDDDDKEGAI 438

Query: 421 PLKESEKISKLQQ 433
            ++      K+++
Sbjct: 439 GVRNKVAGGKMKK 451


>gi|327284970|ref|XP_003227208.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Anolis
           carolinensis]
          Length = 647

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 205/379 (54%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 88  FHQCNFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 147

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 148 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 207

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 208 RGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 267

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL +  +I V     +A       V    +  K   L+Q + +
Sbjct: 268 LMWSATWPKEVRQLAEDFLHDYVQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 327

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 328 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 387

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    
Sbjct: 388 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 447

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E+    +N  L  L
Sbjct: 448 LIKVLEEANQAINPKLMQL 466


>gi|284006731|emb|CBA71988.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
          Length = 449

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 140/443 (31%), Positives = 223/443 (50%), Gaps = 7/443 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ A+ D GY +PT IQ+ TIP  ++  D+ G + TGTGKTA+++LP + 
Sbjct: 12  TFSELELDQSLLNALDDKGYERPTAIQLATIPAAMEGRDILGSSPTGTGKTAAYLLPVIQ 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R R   PR LIL PTRELA QVA+  +   K  +L +A + GG+ +    +   
Sbjct: 72  HLLDFPRKRSGPPRILILTPTRELAMQVAEQAKALAKYTHLDIATITGGVSYVNHAEIFS 131

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          IE L++DEADRMLDMGF   I+ I     + +QT
Sbjct: 132 ENQDIVVATTGRLLQYIKEENFDCRAIETLILDEADRMLDMGFANDIETIAGETRWRKQT 191

Query: 181 LLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT+  + +   +E  L NP  I+ +      + I+  +        K   L    L
Sbjct: 192 MLFSATLAGEAIHDFAERLLNNPHEIDADPSRRERKKIQQYYYRADNLEHKTALLC--HL 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      IIF  +++    L   L++       + G + Q  R + +     G I ++
Sbjct: 250 LKQPDASKSIIFVRKRERAHELVQWLQQANIKTWLLEGEMVQAKRTEAVKRLNSGQINVL 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI D+ HVFNFD+P  A+ Y+HRIGRT RAGR G A +LV   D   +  
Sbjct: 310 VATDVASRGLDIDDISHVFNFDLPRTADVYLHRIGRTARAGRKGIAISLVEAHDQPLLGK 369

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           I + + + +     D  SL P  +    +     + +  I  K     +  +    +   
Sbjct: 370 INRYLNEPLKIRVID--SLRPTTKAPSESSLRKTKPSKKIRLKRQEKKKIDQQQKKKTKQ 427

Query: 420 IPLKESEKISKLQQDIQENDADS 442
              ++S+ I K ++   +   +S
Sbjct: 428 RH-RDSKNIGKRRKPSVKQSDNS 449


>gi|157128260|ref|XP_001661370.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882257|gb|EAT46482.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 639

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 129/412 (31%), Positives = 209/412 (50%), Gaps = 4/412 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F ++G   ++      A +  PTPIQ +  P+ +   D+ GIA+TG+GKT S++LP  
Sbjct: 87  LTFEEVGFPAEIADEWRYAEFTTPTPIQSQGWPIAMSGRDMVGIAKTGSGKTLSYLLPAL 146

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           M    +    R   P  LIL PTRELA Q+    + +G+   +    L GG     Q   
Sbjct: 147 MHIDQQSRLRRGDGPIALILAPTRELAQQIKQVTDDFGRAMKIKNTCLFGGGAKRQQGDD 206

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G +++I TPGR++D  +     +     LV+DEADRMLDMGF P I+ I   +    
Sbjct: 207 LKYGVEIVIATPGRLIDFLSSEHTNLRRCSYLVLDEADRMLDMGFEPQIRAIIEQIRPDH 266

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQ 237
           QTL++SAT  D + ++ +++L++  +I V +    A       +    ++ K+    +  
Sbjct: 267 QTLMWSATWPDAVSRLVKDYLKDYIQINVGSLKLAANHNILQIIDVCQEHEKEAKLSILL 326

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                +     IIF   KK V ++   + + G+    IHG+  QR R   L++F+ G   
Sbjct: 327 REIMAEKECKTIIFIETKKRVDDITRKVLRDGWPAMCIHGDKSQREREYTLNSFRSGKNP 386

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARGLD+ DV  V NFD P  +E+YIHRIGRTGR+   G A+T    ++    
Sbjct: 387 ILIATDVAARGLDVDDVKFVINFDYPTTSEDYIHRIGRTGRSNNTGTAYTFFTPDNAGRA 446

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             +  ++++    +N  L  +     K    +        P  ++S  FDRR
Sbjct: 447 RELIDVLKEAKQVINPKLLDMTTMRIK-GRGKRTFISSRYPRERRSRSFDRR 497


>gi|78049289|ref|YP_365464.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325928526|ref|ZP_08189714.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
 gi|78037719|emb|CAJ25464.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325541065|gb|EGD12619.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
          Length = 462

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 161/437 (36%), Positives = 239/437 (54%), Gaps = 10/437 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PTPIQ + IPLVL  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      V  PR     IL PTRELA QV D+   Y K   +  A++ GG+    Q  
Sbjct: 61  QHLGTAPQTVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+LI  PGR++DH  R  + ++ IE+L++DEADRMLDMGF+P I+ I + +P  
Sbjct: 121 ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180

Query: 178 RQTL-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +   LFSAT  + +++++  F++NP +I+V   ++ AE+I H          +   L  
Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               S+   +  ++F   K     L   LEK G    AIHGN  Q  RM+ LS+FK G +
Sbjct: 241 LAQDSR---EQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LVA+++ K 
Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  I +++ + V+    D+    P    I        R   P  +++      ++ +   
Sbjct: 358 LRQIVRMLGRDVEI--RDVPGYEPQT-PIRWGNSAPGRAEQPGGERAPRKSHARRPHGDA 414

Query: 417 KSHIPLKESEKISKLQQ 433
                     K    Q+
Sbjct: 415 PRQAHAHAGPKKPGGQR 431


>gi|119718818|ref|YP_925783.1| DEAD/DEAH box helicase domain-containing protein [Nocardioides sp.
           JS614]
 gi|119539479|gb|ABL84096.1| ATP-dependent RNA helicase CsdA [Nocardioides sp. JS614]
          Length = 589

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 142/373 (38%), Positives = 215/373 (57%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGLS +V+ A+ D GY KP+ IQ  TIP +L   DV G+AQTGTGKTA+F LP+L
Sbjct: 14  VTFADLGLSDQVLKALADVGYEKPSAIQAATIPPLLAGRDVVGLAQTGTGKTAAFALPIL 73

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + L+  +     P+ L+L PTRELA QV + FE+Y  +      L +  G  +  Q   L
Sbjct: 74  SRLDLTQ---TTPQALVLAPTRELALQVCEAFERYAAHVKGVHVLPVYGGQGYGVQLSAL 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG  V++ TPGRI+DH  +G L ++ +  LV+DEAD ML+MGF   ++ I +  P  + 
Sbjct: 131 RRGVHVVVGTPGRIMDHLEKGTLDLSELRFLVLDEADEMLNMGFAEDVETILADTPDDKN 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  +++++S+ +L +P  I V   ++TA  I   ++                +
Sbjct: 191 VALFSATMPAQIRRISKKYLDDPAEITVKGKTATASNITQRYLTVSYPQKVDALTRILEV 250

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++ + M   I+F   K     L   L  +G S  AI+G++ Q  R + ++  K G + ++
Sbjct: 251 ENFEGM---IVFVRTKNETETLAEKLRARGLSAMAINGDVAQAQRERTVNQLKSGKLDIL 307

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A + V   +   +  
Sbjct: 308 VATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFVTPRERYLLKH 367

Query: 360 IEKLIEKKVDWLN 372
           IEK   + +  + 
Sbjct: 368 IEKATRQPLTQMQ 380


>gi|198282877|ref|YP_002219198.1| DEAD/DEAH box helicase domain-containing protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666755|ref|YP_002425078.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247398|gb|ACH82991.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518968|gb|ACK79554.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 617

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 141/373 (37%), Positives = 221/373 (59%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  L+  +  AV + GY +P+PIQ ++IP +L+  DV G+AQTGTGKTA+F LP+L
Sbjct: 7   LRFIDFALAEPIQKAVTEIGYEQPSPIQAQSIPPLLEGRDVIGLAQTGTGKTAAFALPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + ++ G   +R P+ L+L PTRELA QVA+  + Y K       L I  G     Q K+L
Sbjct: 67  SRVDLG---LRAPQLLVLAPTRELAIQVAEAMQSYAKFLPGFHVLPIYGGQAMTLQLKQL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGRI DH  R  L +++++ +V+DEAD ML MGFI  +++I    P  RQ
Sbjct: 124 QRGVQVVVGTPGRIQDHLRRKTLRLDHLQAVVLDEADEMLRMGFIDAVEDILKHTPEGRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM D ++++++ +L+NP  I + + ++T   I   +      +          +
Sbjct: 184 VALFSATMPDAIRRIAKTYLRNPLEIRIKSATTTVAAIRQRYWQVSGTHKLDALTRILEV 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +     ++F   K   V L   LE +G++  A++G++ Q  R + +   K GT+ ++
Sbjct: 244 EESNAW---LVFVRTKTATVELAERLEARGYACGALNGDLSQAMREQTIERLKAGTLDIV 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+PN  E Y+HRIGRTGRAGR G A   VA  +   + A
Sbjct: 301 VATDVAARGLDVDRISHVINYDIPNDTEAYVHRIGRTGRAGRTGDAILFVAPRERHLLHA 360

Query: 360 IEKLIEKKVDWLN 372
           IE+   + +  ++
Sbjct: 361 IERATGQTITAMH 373


>gi|145342427|ref|XP_001416184.1| Ddx49-related DEAD box helicase superfamily II protein
           [Ostreococcus lucimarinus CCE9901]
 gi|144576409|gb|ABO94477.1| Ddx49-related DEAD box helicase superfamily II protein
           [Ostreococcus lucimarinus CCE9901]
          Length = 417

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 132/422 (31%), Positives = 209/422 (49%), Gaps = 13/422 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLS  ++  +   G+ +P+ +Q   IP +LQ  DV GIA TG+GKTA+F LP++ 
Sbjct: 3   SFDKLGLSGVLLRNIRQLGFTEPSSVQKSCIPPILQGRDVIGIANTGSGKTAAFALPVVH 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L      V       L PTRELA Q+A+ F  +    +L   ++IGG     Q   L +
Sbjct: 63  VLSVDPHGVFALC---LSPTRELAYQIAEQFAVFSVGMSLRCEVVIGGEDLLRQASSLSK 119

Query: 122 GADVLICTPGRILDHFNR---GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              +++ TPGR+L+HF            ++ L++DEADR+LD  F   ++ + + +P  R
Sbjct: 120 RPHIVVATPGRLLEHFMHSSDTIECFQRLKFLILDEADRLLDSSFEAELRYLLTNLPQKR 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT+T  +  +     Q     E     +T       +     +      +    
Sbjct: 180 QTLMFSATITPSVIALKPLLGQRAFYYEEKGELTTPTGCAQYYCFMPEKVKDTYLVHVLR 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     +IFC   +    + H L   G + C++H    QR R   L+ FK   +++
Sbjct: 240 ELVSSKSTRAMIFCPTVQKCEMVSHMLHNLGIAACSLHAAKKQRDRHSTLNAFKSTMVKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+PDV  V N+D+P+    YIHRIGRT R    G+A +LV + D+  I 
Sbjct: 300 LVATDVAARGLDLPDVELVVNYDIPSDPRQYIHRIGRTARFHATGQAISLVTQYDVGKIK 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR---KKNYSS 415
            IEK +  +++  +   + +N  + ++  A    A+ +   P    GFD +   KK   S
Sbjct: 360 KIEKHLGHELEEFHVQEADVNKLVGEV-FASRKMAKLHMASP---GGFDEQLSAKKKRQS 415

Query: 416 QK 417
            K
Sbjct: 416 AK 417


>gi|50305787|ref|XP_452854.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660562|sp|Q6CT85|RRP3_KLULA RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|49641987|emb|CAH01705.1| KLLA0C14608p [Kluyveromyces lactis]
          Length = 487

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 140/424 (33%), Positives = 227/424 (53%), Gaps = 8/424 (1%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
            +L L P+++ A  +  Y KPTPIQ K IP  L+  D+ G+AQTG+GKTA+F +P+L  L
Sbjct: 70  TELDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQL 129

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
              +         IL PTRELA Q+ + F+  G    +    ++GG+    Q + L R  
Sbjct: 130 WHDQQPYYA---CILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKP 186

Query: 124 DVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++I TPGR++DH    K      ++ LV+DEADR+LDM F P +  I +++P   +T  
Sbjct: 187 HIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTY 246

Query: 183 -FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATMT ++ K+    L NP +  V+    T +T+    +           +      +
Sbjct: 247 LFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLL---N 303

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   K+ I+F   K N   + +      FS  A+HG+++Q  R   L  FK G   ++VA
Sbjct: 304 EFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVA 363

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV++ D++ I  IE
Sbjct: 364 TDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 423

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
            ++ KK+   N D  ++    + +D A      + N   ++     + ++   + + ++ 
Sbjct: 424 DVLGKKLPKENVDKDAILALRDSVDKANGEVVMELNRRNKEKQARGKGRRGRMATRDNMD 483

Query: 422 LKES 425
            +E 
Sbjct: 484 REER 487


>gi|296105809|ref|YP_003617509.1| rhlE ATP-dependent RNA helicase [Legionella pneumophila 2300/99
           Alcoy]
 gi|295647710|gb|ADG23557.1| rhlE ATP-dependent RNA helicase [Legionella pneumophila 2300/99
           Alcoy]
          Length = 414

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 161/417 (38%), Positives = 236/417 (56%), Gaps = 14/417 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  L L   +  AV + GY  PT IQ+K IPL+L  HD+ G AQTGTGKTASFVLP+ 
Sbjct: 1   MSFKQLALIEPLNRAVSELGYTNPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               ++ +      + LIL PTRELA QV ++  +YGK   L  A++ GG+    Q K+L
Sbjct: 61  QKASQQTQTSRNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++L+ TPGR+LD + +G +  + I+ LV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 DSGLEILVATPGRLLDLYQQGAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT T E++ ++ N L     I++   ++  +TI+    +    +           
Sbjct: 181 NLLFSATFTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSHLLHK 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       ++F   K     L   L +      AIHGN  Q  R K L++FK G +Q +
Sbjct: 241 NNW---GQTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKVQTL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI  +  V NFD+P+  E+Y+HRIGRTGRAG  G A +LV+ E+IK + +
Sbjct: 298 IATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKLLLS 357

Query: 360 IEKLIEKKVDWLNG-------DLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           IEKLI +K++ +         + S L +  ++K   A      K N   +  T F++
Sbjct: 358 IEKLINQKLERIKIKDFEFLHNFSDLVSAKIQK--FAPPKAGYKGNISRKSKTAFNK 412


>gi|242060494|ref|XP_002451536.1| hypothetical protein SORBIDRAFT_04g003390 [Sorghum bicolor]
 gi|241931367|gb|EES04512.1| hypothetical protein SORBIDRAFT_04g003390 [Sorghum bicolor]
          Length = 410

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 196/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 38  SFDNMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 97

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G       + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 98  QLDYGLVE---CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS 154

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 155 GVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVG 214

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 215 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDL--YE 272

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 273 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 332

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  I+
Sbjct: 333 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 392

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ L  +++ L
Sbjct: 393 RFYNVTIEELPANVADL 409


>gi|229094565|ref|ZP_04225632.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-42]
 gi|228688812|gb|EEL42643.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-42]
          Length = 481

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 138/418 (33%), Positives = 233/418 (55%), Gaps = 15/418 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  LS +V  A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  ++  P  IE+     T + IEH     +    ++   L + + + 
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEH---TLFEVREEEKLSLLKDVTTI 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L +  +    IHG + Q  R  ++ +F++G  + +VA+
Sbjct: 240 ENPDSCIIFCRTQENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE 
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEA 359

Query: 363 LIEKKV---------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            I   +         + + G  +       K  I +  +A  N  I +      ++KK
Sbjct: 360 YIGFAIPKANAPSKEEVMKGKAAFEEKIQAKPTIKKDKNADINKGIMKLYFNGGKKKK 417


>gi|115469764|ref|NP_001058481.1| Os06g0701100 [Oryza sativa Japonica Group]
 gi|97536398|sp|P35683|IF4A1_ORYSJ RecName: Full=Eukaryotic initiation factor 4A-1; Short=eIF-4A-1;
           AltName: Full=ATP-dependent RNA helicase eIF4A-1;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 4
 gi|53791892|dbj|BAD54014.1| eukaryotic initiation factor 4A [Oryza sativa Japonica Group]
 gi|53792733|dbj|BAD53769.1| eukaryotic initiation factor 4A [Oryza sativa Japonica Group]
 gi|113596521|dbj|BAF20395.1| Os06g0701100 [Oryza sativa Japonica Group]
 gi|125598400|gb|EAZ38180.1| hypothetical protein OsJ_22532 [Oryza sativa Japonica Group]
 gi|215712230|dbj|BAG94357.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215740601|dbj|BAG97257.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215767366|dbj|BAG99594.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 414

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 195/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 42  SFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     V   + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 102 QLDYA---VVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS 158

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 159 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVG 218

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 219 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDL--YE 276

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 277 TLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  I+
Sbjct: 337 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 396

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ L  +++ L
Sbjct: 397 RFYNVVIEELPANVADL 413


>gi|332361718|gb|EGJ39522.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1056]
          Length = 523

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 146/373 (39%), Positives = 226/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQA---LIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++                  
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|327468980|gb|EGF14452.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK330]
          Length = 523

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 146/373 (39%), Positives = 226/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQA---LIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++                  
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|306827075|ref|ZP_07460372.1| ATP-dependent RNA helicase DeaD [Streptococcus pyogenes ATCC 10782]
 gi|304430709|gb|EFM33721.1| ATP-dependent RNA helicase DeaD [Streptococcus pyogenes ATCC 10782]
          Length = 539

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 141/371 (38%), Positives = 222/371 (59%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +        + + L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  NKIRTNE---NIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L+++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ +++     T   ++  +V    Q             
Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKQMKPL 365


>gi|209559644|ref|YP_002286116.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131]
 gi|209540845|gb|ACI61421.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131]
          Length = 539

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 141/371 (38%), Positives = 222/371 (59%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +        + + L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  NKIRTNE---NIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L+++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ +++     T   ++  +V    Q             
Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKQMKPL 365


>gi|120602237|ref|YP_966637.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           vulgaris DP4]
 gi|120562466|gb|ABM28210.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4]
          Length = 462

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 149/465 (32%), Positives = 230/465 (49%), Gaps = 20/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADL LSP+++ A+   GY +PTP+Q   IP  L   DV  +A TGTGKTA+FVLPML
Sbjct: 1   MTFADLSLSPRLLAALDGMGYRQPTPVQRGAIPPALAGEDVLALAATGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  G       R L++ PTRELA Q  D+  + G    L    + GG+   AQ  +L 
Sbjct: 61  QRLMDGPRGA--VRALVVAPTRELAEQTHDHVRRLGSMSRLRSTTIYGGVGVVAQALRLR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G +V++  PGR+LDH  RG L ++++E+LV+DE D + D+GF+  ++ +  +VP T Q 
Sbjct: 119 AGVEVVVGCPGRLLDHIRRGNLDLSSLEVLVLDEGDSLFDLGFLADVRMLLGMVPTTCQR 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM D ++           R  V       +       A Y   +     L +   
Sbjct: 179 MLFSATMPDAVRV----LAAEALRQPVTVQVDAVQPASTVHHALYPVPAHLRTPLLKTFL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + ++F   +     L   L+  GFSV  + G + QR R+  L  F++G   ++V
Sbjct: 235 RSGPEGSVVVFVRTRHGARRLWQQLDNVGFSVTCLQGKLSQRRRLAALEGFRDGRYDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV N+DVP+ A+ YIHR+GRTGRA R+G A T V   D   +  I
Sbjct: 295 ATDVAARGLDISQVTHVVNYDVPSTADAYIHRVGRTGRAARNGTAMTFVTPADEAQVRNI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+ +   +            P E++    +  A    P   +     R+ +  + ++   
Sbjct: 355 ERALGTVI------------PRERLADFDYG-APVRGPEGARPAMPPRQPRLPAGKRPAA 401

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDKL 465
           P +  E+  + +     +          +P+  LP+      +++
Sbjct: 402 PQEAQEQPRRGRPRPPRHAVPPAAHPPTIPS-RLPRQTPAGAEQV 445


>gi|94992721|ref|YP_600820.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
 gi|94546229|gb|ABF36276.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
          Length = 416

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 141/371 (38%), Positives = 222/371 (59%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +        + + L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  NKIRTNE---NIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L+++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ +++     T   ++  +V    Q             
Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKQMKPL 365


>gi|15675334|ref|NP_269508.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS]
 gi|19746376|ref|NP_607512.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS8232]
 gi|71903810|ref|YP_280613.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
 gi|71910967|ref|YP_282517.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
 gi|94988830|ref|YP_596931.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94994657|ref|YP_602755.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
 gi|13622515|gb|AAK34229.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS]
 gi|19748574|gb|AAL98011.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS8232]
 gi|71802905|gb|AAX72258.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
 gi|71853749|gb|AAZ51772.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
 gi|94542338|gb|ABF32387.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94548165|gb|ABF38211.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
          Length = 539

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 141/371 (38%), Positives = 222/371 (59%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +        + + L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  NKIRTNE---NIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L+++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ +++     T   ++  +V    Q             
Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKQMKPL 365


>gi|21910615|ref|NP_664883.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28895696|ref|NP_802046.1| ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
 gi|21904817|gb|AAM79686.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28810945|dbj|BAC63879.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
          Length = 539

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 141/371 (38%), Positives = 222/371 (59%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +        + + L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  NKIRTNE---NIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L+++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ +++     T   ++  +V    Q             
Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKQMKPL 365


>gi|56807749|ref|ZP_00365611.1| COG0513: Superfamily II DNA and RNA helicases [Streptococcus
           pyogenes M49 591]
          Length = 385

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 141/371 (38%), Positives = 222/371 (59%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +        + + L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  NKIRTNE---NIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L+++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ +++     T   ++  +V    Q             
Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKQMKPL 365


>gi|291001041|ref|XP_002683087.1| DEAD-box ATP-dependent RNA helicase [Naegleria gruberi]
 gi|284096716|gb|EFC50343.1| DEAD-box ATP-dependent RNA helicase [Naegleria gruberi]
          Length = 887

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 137/469 (29%), Positives = 225/469 (47%), Gaps = 27/469 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++ A+ + GY  PTPIQ + IPL+L+  D+C  A TG+GKTA+F+LP L 
Sbjct: 270 SFNDMNLSRPLLKAIYEKGYEHPTPIQSRCIPLLLKGRDICASAMTGSGKTAAFILPTLE 329

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK--L 119
            L       +    + L PTRELAAQ  ++   + +  ++   L+ GG     +  +   
Sbjct: 330 RLLYRDRSRKETLVVALLPTRELAAQCYEDCSHFLQYTDIRCCLITGGNLKIQKQIQVLQ 389

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   ++      +    N     ++ +E+L++DEADR+L++GF P I+ I   +P  RQ
Sbjct: 390 SKPEIIIATPGRVVDHLLNSPNFRLDEVEVLILDEADRLLELGFEPQIKTILDHIPTARQ 449

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCALLQQL 238
           T+LFSATMTD+++++ +  L+NP R+  ++ +  A  +   F+      +      +   
Sbjct: 450 TMLFSATMTDDIEQLVKLSLKNPIRVSCDSRTGVASGLTQEFIKLADDENIIMKQAILLS 509

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L ++      IIFCN K  V  L   L  +G  V  +  ++ Q  R+K L  F       
Sbjct: 510 LCTRSFPSEVIIFCNTKSMVRKLKMLLFLKGLKVSELSSSLTQAVRLKELYKFASHETDF 569

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V +D+A+RGLDI  V  V NFD+P   + YIHR+GRT RAG  G A ++ ++  I  + 
Sbjct: 570 LVCTDVASRGLDIKGVKTVINFDMPLNLKTYIHRVGRTARAGASGVAVSMSSESSIAILR 629

Query: 359 AIEKLIEK--------------------KVDWLNGDLSSLNPPL---EKIDIAQHNHARK 395
            I +  +K                    K++ +   L  L   L   E++  A+   A+ 
Sbjct: 630 KIVRHSKKKGQSVQQRVIPTESIEFWTDKIEEMKPQLKELEQQLRMEEEMQQAEMLAAKN 689

Query: 396 NNPIPQKSTGFDRRKKNYSSQKSHI-PLKESEKISKLQQDIQENDADSL 443
            N    +     R +K +   K+    L E  K   ++QD        L
Sbjct: 690 ENIEEFREDIMSRPRKEWIMSKAQREELNEKAKAQMVEQDEPTKKKRKL 738


>gi|295688310|ref|YP_003592003.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295430213|gb|ADG09385.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
           21756]
          Length = 475

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 146/373 (39%), Positives = 220/373 (58%), Gaps = 5/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+  ++ A+ + GY +PTPIQ + IP+VLQ  D+ GIAQTGTGKTA+F LP+L 
Sbjct: 3   QFADLGLAKPLLKALAEKGYKEPTPIQAQAIPVVLQGKDLLGIAQTGTGKTAAFALPILQ 62

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L + R        R L+L PTRELA Q+A+NF+ Y  +  L+V  + GG+ +  Q K L
Sbjct: 63  RLAEDRKPAPRRGFRCLVLSPTRELATQIAENFKAYAVHMGLSVHTIYGGVKYGPQMKAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++DH      +++  EI V+DEAD+MLD+GF+  I+ I S +   RQ
Sbjct: 123 AGGIDVLVATPGRLMDHMAEKSAIVSGTEIFVLDEADQMLDLGFVVPIRKIASQLTKNRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSATM  E+ K++   L++P ++ V   ++T E I+   +   AQ  +        L
Sbjct: 183 NLFFSATMPSEIGKLAGELLKDPVQVSVAPQATTVERIDQRVLFIEAQRKRPL---LAEL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +  +    I+F   K+    +   L   G    +IHG+  Q  R + L+ FK G ++ +
Sbjct: 240 FADSSFSRTIVFTRTKRGADRVAKYLNAAGIEAASIHGDKTQGQRERALAAFKAGEMRAL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV HV N+++PN  E Y+HRIGRT R G+ G A +  A ++   +  
Sbjct: 300 VATDIAARGIDVNDVSHVINYELPNVPEAYVHRIGRTARKGKDGIAISFCADDERNLLKD 359

Query: 360 IEKLIEKKVDWLN 372
           I+K   + +   +
Sbjct: 360 IQKATRQTIPAFD 372


>gi|262274927|ref|ZP_06052738.1| ATP-dependent RNA helicase SrmB [Grimontia hollisae CIP 101886]
 gi|262221490|gb|EEY72804.1| ATP-dependent RNA helicase SrmB [Grimontia hollisae CIP 101886]
          Length = 413

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 196/371 (52%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L L P+++ A+ D G+ +PT IQ   IP  +   D+   A TGTGKTA+FVLP+L 
Sbjct: 3   TFAELELDPQLLQALDDMGFERPTAIQAGVIPHGMDGRDILASAPTGTGKTAAFVLPLLQ 62

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L     +   P    IL PTRELA Q+AD      K   L +  + GGI ++   + L 
Sbjct: 63  HLIDFPRQKPGPARALILTPTRELAIQIADQARALAKYTGLKIITITGGISYQEHAEILG 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR++++    +     IE LV+DEADRMLDMGF P +  ++S   + +Q+
Sbjct: 123 KTQDIVVATPGRLMEYVEAERFDCRAIESLVLDEADRMLDMGFGPAVDRLSSECRWRKQS 182

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT     ++   +  L +P  +E   P    + I   +        K         
Sbjct: 183 MLFSATLEGRGIEGFKKTLLTDPVEVEAEPPRRERKKITQWYYRCDDMTHKNA---LLKS 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  K  IIF   ++ +  L   L  +      + G + Q  R   +  F  G I ++
Sbjct: 240 ILTEQAKRAIIFVKTRERLAALREYLTAEKIKCAWLQGEMPQAKRTYAIERFTRGEINVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PD+ HV NFD+P +A+ Y+HRIGRT RAG+ G A +LV   D   +D 
Sbjct: 300 LATDVAARGIDVPDIDHVINFDLPRKADVYLHRIGRTARAGKKGNAISLVEAHDQPMMDR 359

Query: 360 IEKLIEKKVDW 370
           I + +++ V  
Sbjct: 360 ICRYMKEDVKE 370


>gi|254284072|ref|ZP_04959040.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
 gi|219680275|gb|EED36624.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
          Length = 598

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 166/485 (34%), Positives = 250/485 (51%), Gaps = 48/485 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L   ++ A+ D GY  P+ IQ  TIP +L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 10  FDELRLPDFLLKALADVGYESPSAIQSMTIPPLLDGHDLVGQAQTGTGKTAAFALPVLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKLER 121
           L+    +   P+ L+L PTRELA QVA+ F+KY +       + I G   +  Q ++L+R
Sbjct: 70  LDT---KAGGPQALVLTPTRELAIQVAEAFQKYARYSKGFKVVPIYGGSDYRTQLRQLQR 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH  RG L +++++ LV+DEAD ML MGFI  ++ I    P TRQ  
Sbjct: 127 GVHIIVGTPGRVMDHMRRGSLDLSSLKTLVLDEADEMLRMGFIDDVEWILEQTPATRQIA 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++++++  LQ+P+ I +   + T  +I                      + 
Sbjct: 187 LFSATMPDAIRRIAKTHLQSPQEITIKRKTVTNASIRQRVWIMAGVQKLDALTRILETED 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D +   IIF   +     L   L  +GF+  A++G+I Q  R K + +FK G + L+VA
Sbjct: 247 YDGV---IIFVRTRIATQELADKLAARGFATAALNGDIAQNQREKTVDSFKRGQLDLLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HV N+D+PN  E YIHRIGRTGRAGR G+A    AK + + + AIE
Sbjct: 304 TDVAARGLDVDRVSHVINYDIPNDPEAYIHRIGRTGRAGRTGEAILFAAKRERRLLHAIE 363

Query: 362 KLIEKKVDWLN-------------------------GDLSSLNPPLEKIDIA-------- 388
           +   +K+D +                           +LSS    +E             
Sbjct: 364 RTTGQKIDQMTLPSAEQVVDKRAARFKARITETLAASELSSARELVESYQQEFGVPVVEV 423

Query: 389 -------QHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDAD 441
                     +A    P P++     R +++ SS K+  P +   K +K +    E DA+
Sbjct: 424 AAALVVMSQGNALTPAPEPERKPRTARAERDDSSSKAPRPPRSDAK-AKPRPKRAEGDAE 482

Query: 442 SLGFR 446
           +   R
Sbjct: 483 AGMMR 487


>gi|148696858|gb|EDL28805.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Mus musculus]
          Length = 545

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 157/446 (35%), Positives = 235/446 (52%), Gaps = 17/446 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++GLS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 8   FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 68  LSE---DPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 124

Query: 123 ADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI---QNITSLVPFTR 178
             V+I TPGR      +     M  I+ LV+DEADR+L+ G   +    + I + VP  R
Sbjct: 125 PHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPARR 184

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQ 237
           QTLLFSAT+TD L+++       P   E      T E ++  ++             L Q
Sbjct: 185 QTLLFSATLTDTLKELQGLATNEPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVHLVQ 244

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             Q Q    + IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK    +
Sbjct: 245 TFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYR 304

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI  +
Sbjct: 305 ILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLL 364

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK-NYSSQ 416
            AIE+ I++++  L  + + +   L      Q N  R+   I  +++ FD +K+ N   Q
Sbjct: 365 HAIEEQIKQQLAELVVEEAEVLQIL-----TQVNVVRRECEIKLEASHFDEKKEINKRKQ 419

Query: 417 ---KSHIPLKESEKISKLQQDIQEND 439
              +   P  E+++ ++L +  Q+N 
Sbjct: 420 MILEGKDPDLEAKRKAELAKIKQQNR 445


>gi|67972435|ref|NP_001020093.2| probable ATP-dependent RNA helicase DDX49 [Mus musculus]
 gi|76364172|sp|Q4FZF3|DDX49_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX49; AltName:
           Full=DEAD box protein 49
 gi|71051022|gb|AAH99554.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Mus musculus]
          Length = 480

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 157/446 (35%), Positives = 235/446 (52%), Gaps = 17/446 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++GLS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  LSE---DPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 123 ADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI---QNITSLVPFTR 178
             V+I TPGR      +     M  I+ LV+DEADR+L+ G   +    + I + VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQ 237
           QTLLFSAT+TD L+++       P   E      T E ++  ++             L Q
Sbjct: 181 QTLLFSATLTDTLKELQGLATNEPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVHLVQ 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             Q Q    + IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK    +
Sbjct: 241 TFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI  +
Sbjct: 301 ILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLL 360

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK-NYSSQ 416
            AIE+ I++++  L  + + +   L      Q N  R+   I  +++ FD +K+ N   Q
Sbjct: 361 HAIEEQIKQQLAELVVEEAEVLQIL-----TQVNVVRRECEIKLEASHFDEKKEINKRKQ 415

Query: 417 ---KSHIPLKESEKISKLQQDIQEND 439
              +   P  E+++ ++L +  Q+N 
Sbjct: 416 MILEGKDPDLEAKRKAELAKIKQQNR 441


>gi|229005142|ref|ZP_04162865.1| ATP-dependent RNA helicase [Bacillus mycoides Rock1-4]
 gi|228756117|gb|EEM05439.1| ATP-dependent RNA helicase [Bacillus mycoides Rock1-4]
          Length = 433

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 143/440 (32%), Positives = 239/440 (54%), Gaps = 16/440 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+V+   D+ G A+TGTGKT +FVLP+L 
Sbjct: 3   NFLELGISETFNHTLRENGIAEATPIQEKAIPVVMAGKDIIGQAKTGTGKTLAFVLPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    EK   +      L I G      Q +KL+
Sbjct: 63  KIDPESSDVQA---LIVAPTRELALQITTEIEKMLVHQENINVLAIYGGQDVAQQMRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  ++++N+ +LV+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETPESKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ +++ P+ I++ +   T   I            +      + + 
Sbjct: 180 MLFSATMPKDIKKLAKRYMKEPEMIQIQSAEVTVNNI---KQRVIETTDRAKQDALRHVM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K+    L   L+  G++   +HG++ Q  R +++ +F++  IQ ++
Sbjct: 237 DRDQPFLAVIFCRTKRRASKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFRDAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D  ++  I
Sbjct: 297 ATDVAARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAPKDEMYLKEI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR----KKNYSSQ 416
           EK I   +         L  P+++ D A     ++     +K+  + ++        + Q
Sbjct: 357 EKGIGATLQR-----QELELPVKQNDDASEKKKKQQIKKTKKTGQYGQKDNPGGSKNTKQ 411

Query: 417 KSHIPLKESEKISKLQQDIQ 436
           +S     E +   K  Q  +
Sbjct: 412 RSFHKPSEKKNSKKQGQQRR 431


>gi|28198088|ref|NP_778402.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
 gi|182680716|ref|YP_001828876.1| DEAD/DEAH box helicase domain-containing protein [Xylella
           fastidiosa M23]
 gi|28056148|gb|AAO28051.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
 gi|182630826|gb|ACB91602.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23]
 gi|307579180|gb|ADN63149.1| ATP-dependent RNA helicase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 446

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 152/423 (35%), Positives = 231/423 (54%), Gaps = 9/423 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LGL P ++ A+ + GY  PTPIQ + IPL L  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MNFETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L    + V    PR L+L PTRELA QV D+   Y K   ++ A++ GG+    Q   
Sbjct: 61  QRLMAASSNVGAGKPRALVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLDV 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+LI  PGR++DH  R  + ++ + ILV+DEADRMLDMGF+P I+ I   +P   
Sbjct: 121 LRRGVDLLIACPGRLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPRQN 180

Query: 179 QTL-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +   LFSAT  + +++++  F+  P+ + V + ++ AETI H          ++  L   
Sbjct: 181 RQTLLFSATFAEPIKQLALEFMCRPREVMVASHNTVAETITHRVHPVDVSRKRELLLYLL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              S++     +   +    +          G    AIHGN  Q  R++ L++FK G + 
Sbjct: 241 AQDSREQTLVFVRTKHGSDKLATFLEK---YGIKTAAIHGNKTQGQRLRALNSFKAGRVT 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LV +ED K +
Sbjct: 298 VLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             I +L+++ +D    D+    P +  I        +   P  Q      + ++ +    
Sbjct: 358 RQIVRLLDRDMDI--RDVPDFEPQV-PIRWGNSAPGKSKQPAGQHPPRKSQHRRAFGKAS 414

Query: 418 SHI 420
            H 
Sbjct: 415 VHT 417


>gi|27366822|ref|NP_762349.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|320158706|ref|YP_004191084.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
 gi|27358389|gb|AAO07339.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|319934018|gb|ADV88881.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
          Length = 427

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 156/418 (37%), Positives = 237/418 (56%), Gaps = 11/418 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA  G +P+VV A+ + GY K TPIQ K IP+  + HD+   AQTGTGKTA+F LP++
Sbjct: 1   MSFASQGFAPEVVKALEECGYEKLTPIQQKAIPVARRGHDIFATAQTGTGKTAAFSLPLI 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +             I  PTRELA Q+ADN + Y K  NL+VA + GG    +Q + 
Sbjct: 61  QQLLESGKSASRKTARALIFAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQERM 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H   G + + NIE LV DEADR+LDMGFI  ++ I   V    
Sbjct: 121 LENGVDILVATPGRLEEHIESGNVSVANIEFLVFDEADRILDMGFINAVRKIMLDVETNP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L ++S++ L+ PKRI V   ++TA T+ H       +   +       
Sbjct: 181 QIMMFSATTSSQLNELSKDILRKPKRIAVERENTTAHTVAHVLYPVDQERKTELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F N K+   ++   L+  G      HG+  Q +R + L  FKEG +++
Sbjct: 239 -IGRKNWQQVLVFVNYKETANDIVKELKLDGIKANVCHGDKAQSARRRALEEFKEGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V +E+   + 
Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVV 357

Query: 359 AIEKLIEKKVDWLN---GDLSSLNPPLEKIDIA---QHNHARKNNPIPQKSTGFDRRK 410
            +E LI++++  +     +  S    ++K++     ++   R+NN           R+
Sbjct: 358 QVENLIQQRIRRIELAGYEPKSREAYIDKLNSKPSFKNRQGRRNNANEPTDQAAAERR 415


>gi|37676599|ref|NP_936995.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|37201142|dbj|BAC96965.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 445

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 156/418 (37%), Positives = 237/418 (56%), Gaps = 11/418 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA  G +P+VV A+ + GY K TPIQ K IP+  + HD+   AQTGTGKTA+F LP++
Sbjct: 19  MSFASQGFAPEVVKALEECGYEKLTPIQQKAIPVARRGHDIFATAQTGTGKTAAFSLPLI 78

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +             I  PTRELA Q+ADN + Y K  NL+VA + GG    +Q + 
Sbjct: 79  QQLLESGKSASRKTARALIFAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQERM 138

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G D+L+ TPGR+ +H   G + + NIE LV DEADR+LDMGFI  ++ I   V    
Sbjct: 139 LENGVDILVATPGRLEEHIESGNVSVANIEFLVFDEADRILDMGFINAVRKIMLDVETNP 198

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT + +L ++S++ L+ PKRI V   ++TA T+ H       +   +       
Sbjct: 199 QIMMFSATTSSQLNELSKDILRKPKRIAVERENTTAHTVAHVLYPVDQERKTELLSEL-- 256

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F N K+   ++   L+  G      HG+  Q +R + L  FKEG +++
Sbjct: 257 -IGRKNWQQVLVFVNYKETANDIVKELKLDGIKANVCHGDKAQSARRRALEEFKEGKVRV 315

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI D+ HV N+D+P  AE+Y+HRIGRTGRAG+ G A + V +E+   + 
Sbjct: 316 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVV 375

Query: 359 AIEKLIEKKVDWLN---GDLSSLNPPLEKIDIA---QHNHARKNNPIPQKSTGFDRRK 410
            +E LI++++  +     +  S    ++K++     ++   R+NN           R+
Sbjct: 376 QVENLIQQRIRRIELAGYEPKSREAYIDKLNSKPSFKNRQGRRNNANEPTDQAAAERR 433


>gi|71898621|ref|ZP_00680791.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|71731568|gb|EAO33629.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
          Length = 446

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 152/423 (35%), Positives = 231/423 (54%), Gaps = 9/423 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LGL P ++ A+ + GY  PTPIQ + IPL L  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MNFETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L    + V    PR L+L PTRELA QV D+   Y K   ++ A++ GG+    Q   
Sbjct: 61  QRLMAASSNVGAGKPRALVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLDV 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+LI  PGR++DH  R  + ++ + ILV+DEADRMLDMGF+P I+ I   +P   
Sbjct: 121 LRRGVDLLIACPGRLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPRQN 180

Query: 179 QTL-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +   LFSAT  + +++++  F+  P+ + V + ++ AETI H          ++  L   
Sbjct: 181 RQTLLFSATFAEPIKQLALEFMCRPREVMVASHNTVAETITHRVHPVDVSRKRELLLYLL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              S++     +   +    +          G    AIHGN  Q  R++ L++FK G + 
Sbjct: 241 AQDSREQTLVFVRTKHGSDKLATFLEK---YGIKTAAIHGNKTQGQRLRALNSFKAGRVT 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LV +ED K +
Sbjct: 298 VLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             I +L+++ +D    D+    P +  I        +   P  Q      + ++ +    
Sbjct: 358 RQIVRLLDRDMDI--RDVPDFEPQV-PIRWGNSAPGKSKQPAGQHPPRKSQHRRAFGKAS 414

Query: 418 SHI 420
            H 
Sbjct: 415 VHT 417


>gi|331655464|ref|ZP_08356457.1| ATP-dependent RNA helicase RhlB [Escherichia coli M718]
 gi|331046785|gb|EGI18869.1| ATP-dependent RNA helicase RhlB [Escherichia coli M718]
          Length = 421

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 138/413 (33%), Positives = 207/413 (50%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTCGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGAPRNRRRSG 421


>gi|296283706|ref|ZP_06861704.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354]
          Length = 461

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 150/423 (35%), Positives = 225/423 (53%), Gaps = 9/423 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGLS  V+ A+   GY +PTPIQ + IP VL+  D+ GIAQTGTGKTA+F+LP + 
Sbjct: 3   KFTDLGLSQPVLQALDMKGYSEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSID 62

Query: 62  ILEKGRARVRMPRTLI--LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L +   +       +  L PTRELA Q+A + + YG    L V  ++GG        KL
Sbjct: 63  RLREAENQTPFKSCRMLVLAPTRELAGQIAQSAKDYGALAGLKVQSIVGGTSVNKDRNKL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD  ++    ++ +EILV+DEAD+MLD+GFI  ++ I  L P TRQ
Sbjct: 123 HRGTDILVATPGRLLDLIDQRAFTLDKVEILVLDEADQMLDLGFIHALRKINELTPKTRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ-- 237
           TL FSATM   ++ +   + +NP ++ V   S+TAE IE           +    L    
Sbjct: 183 TLFFSATMPKAIKDLVSQYCRNPAQVSVTPESTTAERIEQFLFMVQQDEKQSLLELILSG 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             +    ++  ++F   K     +   L + G    AIHGN  Q  R + L  FK     
Sbjct: 243 RHEIPGKLERVLVFARTKHGCDRVVKKLAQVGIPANAIHGNKSQPQRERALDEFKRAKTP 302

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DIP V HV N+++PN  E Y+HRIGRT RAG  G A    A+++ +++
Sbjct: 303 VLVATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGADGIAIAFCAEDERQYL 362

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKI----DIAQHNHARKNNPIPQKSTGFDRRKKNY 413
             I K  + + + L     +    +E +       +    ++  P P        + K+ 
Sbjct: 363 KDIRKTTDAEFERLPLP-DNFRAVVEGVGPTKPAPKQQRGQRVTPRPIGDGARKPKAKHP 421

Query: 414 SSQ 416
           + +
Sbjct: 422 ARK 424


>gi|301110278|ref|XP_002904219.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262096345|gb|EEY54397.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 758

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 139/452 (30%), Positives = 236/452 (52%), Gaps = 22/452 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL LS  ++ A+   G+ KPTPIQ + IP+ L   D+C  AQTG+GKTA+F+LP+L 
Sbjct: 132 TFADLKLSRPIMRAISHIGFEKPTPIQQRAIPIALTGKDICASAQTGSGKTAAFLLPILE 191

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    RV+  R +I+ P RELA Q     E+  +  ++T +L +GG+P +AQ  +L  
Sbjct: 192 RLQFRSRRVQSTRVMIICPVRELATQCQSMLEQLARFTDITCSLAVGGLPLKAQEAELRN 251

Query: 122 GADVLICTP-GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV++CTP   I    N   + M+++EILV+DEADR+L++GF   +  +  + P  RQT
Sbjct: 252 RPDVVVCTPGRMIDHLRNSKSVHMDDLEILVLDEADRLLELGFTEEVLELVRMCPVQRQT 311

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT ++ ++ +  ++ P RI  +     A+ +   FV            +   L 
Sbjct: 312 MLFSATMTSKVDQLIDLSMKRPVRISTDPLFDMAKHLVQEFVRIRPNREDDREAILLALC 371

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    N I+F   K +   +       G     +HGN+ QR R++ L  F++GT+ +++
Sbjct: 372 TRTFRSNTIVFMETKSHAHRMMIIFGLAGIKAAELHGNLQQRERLEALQKFRDGTVDVLL 431

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+D+  V  V N+++P     Y+HR+GRT RAGR+G+A TL ++     +  +
Sbjct: 432 CTDIAARGIDVRGVHAVINYEMPKDITTYVHRVGRTARAGRNGRAVTLTSESRRLVMKQV 491

Query: 361 EKLI-----------------EKKVDWLNGDLSSL--NPPLEK-IDIAQHNHARKNNPIP 400
            +                   + +++ +  D+  +     LEK +  A+    R  N + 
Sbjct: 492 SRHCQGFVKSRAVPDPVIAQWKARIESMLEDVKLVMHEETLEKRMREAEKEATRATNLLK 551

Query: 401 QKSTGFDRRKKN-YSSQKSHIPLKESEKISKL 431
            +     R  +  + S+K    + E  +  + 
Sbjct: 552 HRDEINARPARTWFMSEKEKKNVNERAEEDRR 583


>gi|226501258|ref|NP_001151064.1| LOC100284697 [Zea mays]
 gi|194690824|gb|ACF79496.1| unknown [Zea mays]
 gi|195644024|gb|ACG41480.1| eukaryotic initiation factor 4A [Zea mays]
          Length = 410

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 195/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 38  SFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 97

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G       + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 98  QLDYGLVE---CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS 154

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 155 GVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVG 214

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 215 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNIDKEDWKLDTLCDL--YE 272

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 273 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 332

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  I+
Sbjct: 333 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 392

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     V+ L  +++ L
Sbjct: 393 RFYNVTVEELPANVADL 409


>gi|154340487|ref|XP_001566200.1| DEAD box RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063519|emb|CAM39700.1| putative DEAD box RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 389

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 190/374 (50%), Gaps = 6/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   GY +PT IQ + I   L+  DV   A +GTGKT++F + +L 
Sbjct: 18  TFEAMGLKEDLLKGMYRFGYKQPTAIQKRFIMPFLKGRDVIAQASSGTGKTSAFCVCLLQ 77

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             +        P+ LIL PTRELA Q  D     G +  L     IGG   E   ++LE 
Sbjct: 78  ACDPHTRE---PQALILSPTRELAVQTQDLCNNIGHHMGLKAYACIGGKSTEEDIRRLEN 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L +N ++ LV+DEAD ML  GF   I +I  ++P  +  L
Sbjct: 135 GVHIVSGTPGRVFDMIRRKSLRVNGLKTLVLDEADEMLGKGFKAQIHDIYRMIPPLQIIL 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + +    D L+   +   +    +      +     ++          K    +   L  
Sbjct: 195 VSATLPADVLEMTEKFMTEPASILVKRDEITVDSVRQY---FVSVDEEKNKFDVLMELYD 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+ + ++FCN +K V  L   + ++ F+V A+HG++ Q  R +I+  F++G  ++++ 
Sbjct: 252 SLTIAHAVVFCNTRKKVEQLAKKMTREKFTVVAMHGDMPQAERDEIMRQFRDGHSRVLIT 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   E YIHRIGRTGR GR G A T V  ++++ +  IE
Sbjct: 312 TDLWARGIDVERVSLVLNYDLPLAREQYIHRIGRTGRMGRTGLAITFVRHDELRLLRDIE 371

Query: 362 KLIEKKVDWLNGDL 375
           +    +++ L  ++
Sbjct: 372 QFYATQIEELPANI 385


>gi|88812119|ref|ZP_01127371.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis
           Nb-231]
 gi|88790623|gb|EAR21738.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis
           Nb-231]
          Length = 429

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 159/429 (37%), Positives = 238/429 (55%), Gaps = 12/429 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   GLS  ++ AV   GY  PTPIQ + IPLV+   D+   AQTGTGKTA+F LP+L
Sbjct: 1   MTFDCFGLSADILRAVRTEGYTTPTPIQAQAIPLVVAGRDLLAAAQTGTGKTAAFTLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     R R PR L+L PTRELAAQV ++   YG++  L    + GG+    Q   L 
Sbjct: 61  QRLSAVPTRHRAPRALVLTPTRELAAQVRESVRSYGRHLPLRSTAVFGGVGINPQISALR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR+LDH  +  + ++ +EI V+DEADRMLDMGFI  I+ + + +P  RQ 
Sbjct: 121 SGVDVVVATPGRLLDHLQQRTVELSRVEIFVLDEADRMLDMGFIRDIRKVMAALPQKRQN 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT + E++K+++  L +P  ++    +S AE I H          +        L 
Sbjct: 181 LLFSATFSGEIRKLADQILHDPASVDTAPRNSVAELITHKVHPVAQSRKRAL---LAHLI 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F   K     L   L++ G +  AIH +  Q +R K L +FK G ++++V
Sbjct: 238 GNGKWSQVLVFTRTKHGANRLATQLDRDGLNATAIHSSKSQSARTKALQDFKRGRVRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + HV N+++ N AE+Y+HRIGRTGRAG  G+A +LV+ ++ KH+  I
Sbjct: 298 ATDIAARGLDIEALPHVVNYELSNIAEDYVHRIGRTGRAGSQGQAVSLVSADERKHLANI 357

Query: 361 EKLIEKKVD--WLNG-------DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           E+L+ +++    + G       +  SLNP   + + A+   ++          G   R +
Sbjct: 358 ERLLGRRLPCTVIEGFEPVAANEAPSLNPTRPQPNRARRRPSQSAYANNGDGPGRSTRPR 417

Query: 412 NYSSQKSHI 420
               + +  
Sbjct: 418 GNRRRPART 426


>gi|46138553|ref|XP_390967.1| hypothetical protein FG10791.1 [Gibberella zeae PH-1]
 gi|91206578|sp|Q4HW67|DHH1_GIBZE RecName: Full=ATP-dependent RNA helicase DHH1
          Length = 486

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 119/413 (28%), Positives = 196/413 (47%), Gaps = 17/413 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +  L   ++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 42  LEFENFALKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVIPTL 101

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     ++   + LIL PTRELA Q +   +  GK+  + V +  GG        +L+
Sbjct: 102 ERI---NPKISKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIIRLQ 158

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +    ++   + ++DEAD++L + F P I+ +    P  RQ 
Sbjct: 159 DPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQV 218

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F                 T+            K+       L 
Sbjct: 219 MLFSATFPLSVKD----FSDKNMVSPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 274

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 275 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMQQHARNRVFHDFRNGVCRNLV 334

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 335 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNI 394

Query: 361 EKLIEKKVDWLNGDL----------SSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           E+ +  ++  +   +           S+  P+  +   Q   A+  +  PQ  
Sbjct: 395 ERDLGTEIQPIPASIDKSLYVYENPESIPRPISNLPRGQLPAAQGQHQNPQHG 447


>gi|170046083|ref|XP_001850610.1| ATP-dependent RNA helicase DBP8 [Culex quinquefasciatus]
 gi|167868981|gb|EDS32364.1| ATP-dependent RNA helicase DBP8 [Culex quinquefasciatus]
          Length = 516

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 122/442 (27%), Positives = 196/442 (44%), Gaps = 12/442 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL P +   +   G  +PTPIQ   IP +L   D  G A+TG+GKT +F LP+L 
Sbjct: 8   KFADLGLKPWITKQLEKLGLRRPTPIQQACIPRILDGQDCIGAAKTGSGKTFAFALPILQ 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L            LIL PT ELA Q+A+ F   G+   + V ++ GG     + ++L+ 
Sbjct: 68  RL---SEEPTSNFALILTPTHELAYQIAEQFSVAGQPMGVKVCVVTGGTDQLLEAQRLQA 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++  PGR+  H              ++ +    +  G               ++  
Sbjct: 125 RPHIVVAMPGRLAAHLTGCNTYSFRALQFLVVDEADRVLSGSFDEDLEAIKRFLPEKRQN 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPS---STAETIEHCFVATYAQYSKKCALLQQL 238
           LF +    E  + S  F       E +  S   +     +   +              + 
Sbjct: 185 LFFSATLKEFMRESSVFPIAGGAFEWSEESEVATVETLDQRYILCADYDRDMVLIETLRK 244

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            + +    N IIF N KK+   L  +L K GF    +HG + Q+ R+  L+ FK   +++
Sbjct: 245 FKEEKEDANVIIFTNSKKDCQVLSLTLNKIGFDNVCLHGFLRQKERVAALNRFKSKHVRI 304

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHI 357
           ++A+D+A+RGLDIP+V  V N  +P     YIHR+GRT RAGR G A ++     D++ +
Sbjct: 305 LIATDVASRGLDIPNVQLVLNHRLPKVPNEYIHRVGRTARAGRKGLAISIFRFPRDLEFL 364

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE LI  K+     D       +E+I   Q + AR+   +   +  FD R+ NY  +K
Sbjct: 365 GEIEALINTKLTEHPVD----QRLVERI-FMQVSVARREAEMNLDNKDFDERRHNYRRKK 419

Query: 418 SHIPLKESEKISKLQQDIQEND 439
                 + +++    +  QE  
Sbjct: 420 WLEQGLDPDEMDAKWKREQEQR 441


>gi|255033889|ref|YP_003084510.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254946645|gb|ACT91345.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 481

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 136/426 (31%), Positives = 217/426 (50%), Gaps = 18/426 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +  L   V+ AV    Y + TPIQ + IP +L   D+   AQTGTGKTA++++P+L
Sbjct: 1   MNFNEFELHEDVLNAVDSMNYQQATPIQEQAIPHILSGKDLLACAQTGTGKTAAYLIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +            LIL PTRELA Q+    +  G     T   + GG      +++ +
Sbjct: 61  DKVAHEANE--HTGALILVPTRELAVQIDQQIQGLGYFVGATSIAVYGGNKGPEWDQQKK 118

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              +GAD++I TPGR++ H   G +   ++  LV+DEADRMLDMGF+  I  I S +P  
Sbjct: 119 ALTQGADIIIATPGRLIAHLQLGYVHFRDLRHLVLDEADRMLDMGFLGDILKIMSYLPNE 178

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL+FSATM  ++  +++  L+ P+ I +                 Y    ++   L  
Sbjct: 179 RQTLMFSATMPPKIGDLAKRILKEPEEIRLAVSRPADRI----DQQFYLAKDEQKLPLLM 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L       + ++F ++K NV  +  +L K G     I  + +Q  R  +L +FK     
Sbjct: 235 HLLKGVENISMVLFTSRKSNVEPIVRALRKLGLGAHGISSDSEQGEREIVLRDFKNRQFP 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ +RG+DI ++ HV N+DVP   E+Y+HRIGRT RA   G A T + ++D K++
Sbjct: 295 ILVATDVLSRGIDIDNLSHVVNYDVPRDPEDYVHRIGRTARAESKGTAMTFINEQDQKYV 354

Query: 358 DAIEKLIEKKVDWLN-------GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
             IE+L EK+++  +       G+     PP  ++     N   +  P P   +G    +
Sbjct: 355 LKIERLFEKELEKKSLTAELGLGEAPLFEPP--RLRSGGRNKKNRKKPAPGAPSGRKPHR 412

Query: 411 KNYSSQ 416
           +    Q
Sbjct: 413 EARPRQ 418


>gi|313202589|ref|YP_004041246.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312441905|gb|ADQ78261.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 443

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 144/429 (33%), Positives = 224/429 (52%), Gaps = 10/429 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  ++  ++ A+ D G  +PT IQ K  P+++   D+ GIAQTGTGKT +++LP  
Sbjct: 1   MTFTDFNINSPLLNALSDLGLTQPTTIQEKAYPVIMSGKDMVGIAQTGTGKTIAYLLP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + +    + + P+ LI+ PTREL  QV +  EK     ++ V  + GG+    Q   + 
Sbjct: 59  CLRQWKFTKEKHPQILIVVPTRELVIQVVEQVEKLTTYMSVRVVGVYGGVNMIRQTPLVV 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVL+ TPGR+LD    G L + +I+  VIDE D ML++GF P +  I  L+P  RQ 
Sbjct: 119 AGVDVLVATPGRLLDLALNGSLKLKSIKRFVIDEVDEMLNLGFRPQLVRIIDLLPTKRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+++EL+ +  +F   P  IE     +  E I+         Y+K   L   L  
Sbjct: 179 LMFSATISEELKDLVHDFFVEPLEIEAAPTGTPLENIKQIGFRVPNFYTKVNMLEFLLNN 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  K  +    +K           K       IH N  Q +R + +  FKE   ++++
Sbjct: 239 HPEFSKVLVFTSTKKLADALYDEIASKFPGQFGLIHSNKSQNNRFESMRGFKESEYRVLI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLDI DV HV NFDVP   ENY+HRIGRTGRA + G A T + K D ++ +AI
Sbjct: 299 ATDIVARGLDISDVSHVVNFDVPEVPENYMHRIGRTGRADKKGVALTFITKADKEYREAI 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E L+ KK+         +    E++++++     +   +  K+T     KK    +  H 
Sbjct: 359 EALMNKKIP--------MTAMPEEVEVSKELTLDEMPQVTMKNTLVKLPKKEEGGEAFHE 410

Query: 421 PLKESEKIS 429
              +++K++
Sbjct: 411 KKDKNKKVN 419


>gi|302384214|ref|YP_003820037.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
 gi|302194842|gb|ADL02414.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 528

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 160/457 (35%), Positives = 243/457 (53%), Gaps = 14/457 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+  ++ A+   GY  PTPIQ + IP V+   D+ GIAQTGTGKTA+F LP+L 
Sbjct: 16  TFESFGLNKALLQALTTEGYTVPTPIQAQAIPSVMLGKDLLGIAQTGTGKTAAFALPILH 75

Query: 62  ILEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L + R     R  R LIL PTRELA+Q+AD+F+ YG++    VA++ GG+ +  Q + +
Sbjct: 76  RLAENRVAPLPRTTRCLILSPTRELASQIADSFKAYGRHLGFKVAVVFGGVKYGPQERAI 135

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G DVL+ TPGR+LDH  +  L +++ EI V+DEAD+MLD+GF+  I+ I S +P  RQ
Sbjct: 136 QAGLDVLVATPGRLLDHMQQKTLDLSSTEIFVLDEADQMLDLGFVKPIRQIVSRIPAKRQ 195

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSATM  E+ K++   L+ P +++V   S+T E I    +       +        +
Sbjct: 196 NLFFSATMPTEIGKLAGELLKEPVKVQVTPQSTTVERINQSVIHVEQGRKRAL---LTEM 252

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + D     ++F   K     +   LE  G    AIHGN  Q  R + L+ FK G ++++
Sbjct: 253 FADDNFTRCLVFTKTKHGADKVAAYLEAGGVQAGAIHGNKSQPQRERTLAAFKAGKLRVL 312

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV NF++P   E Y+HRIGRT RAG  G A + VA +++K +  
Sbjct: 313 VATDIAARGIDVDGVSHVVNFELPFVPEAYVHRIGRTARAGADGSAISFVAGDEMKLLKD 372

Query: 360 IEKLIEKKVDWLNG---------DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           IEK+  +K+   +          D S +   +           R       ++   D  K
Sbjct: 373 IEKVTRQKIPATDRRNDKSLGLLDQSIMAAGVGTKATMPDREERPRGEGRNRNPRRDGVK 432

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
           K +  Q   +  K +      +   ++ +    G R 
Sbjct: 433 KEHGGQPHRVRGKGAPNRDGARDGGRDQNRGHNGDRS 469


>gi|237752663|ref|ZP_04583143.1| ATP-dependent RNA helicase [Helicobacter winghamensis ATCC BAA-430]
 gi|229376152|gb|EEO26243.1| ATP-dependent RNA helicase [Helicobacter winghamensis ATCC BAA-430]
          Length = 515

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 146/384 (38%), Positives = 217/384 (56%), Gaps = 9/384 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G    V+  + +AG+ +P+PIQ + IPL+L   D+   AQTGTGKTA+F LP++  
Sbjct: 16  FESFGFKKSVLRGIKEAGFSEPSPIQKEAIPLILDGLDIIAQAQTGTGKTAAFGLPLINN 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           LI+ PTRELA QV+D   K GK   +    L GG P   Q + LE+ 
Sbjct: 76  LKND----GSIEVLIVTPTRELAMQVSDEIFKLGKYNRVKTVSLFGGQPIRRQIELLEKK 131

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    +L      ++V+DE+D MLDMGF+  I+ I + +   RQTLL
Sbjct: 132 PQVIIATPGRLLDHLRNERLKNFYPSVVVLDESDEMLDMGFLDDIEEIFTYLSSDRQTLL 191

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   ++ +++  L NPK I++    +T + I   +     Q  +   +        
Sbjct: 192 FSATMPTPIKHLAQKILSNPKLIKITQDDTTNQDISQRYYIINEQEREDAIVRL---IDS 248

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  +  IIF   KK    L   L  +GF   A+HG+++QR R+K +  FK+ TI ++VA+
Sbjct: 249 EMPQKAIIFTRMKKEADILSERLLSRGFKAGALHGDMEQRERVKSIKAFKDSTIDILVAT 308

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HVFNF +P   E+Y+HRIGRTGRAG+ G A TL    + K +  I++
Sbjct: 309 DIAARGLDISGVSHVFNFHIPLNPESYVHRIGRTGRAGKKGVAITLATPLEFKELRRIKE 368

Query: 363 LIEKKVDWLNGDLSSLNPPLEKID 386
             +  ++    ++ S+   ++K D
Sbjct: 369 NTKASIELY--EIPSIQDTMDKKD 390


>gi|269961856|ref|ZP_06176213.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
 gi|269833434|gb|EEZ87536.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
          Length = 526

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 172/390 (44%), Positives = 237/390 (60%), Gaps = 6/390 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G   R    R L+L PTRELAAQV +N   Y ++  LT A++ GG+    Q  +L
Sbjct: 61  ERLSNGPRVRSNQVRALVLTPTRELAAQVQENVFMYSRHLPLTSAVVFGGVKINPQMLRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR+LD +N+  +  + +E+LV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 RKGADVLVATPGRLLDLYNQNAVKFDQLEMLVLDEADRMLDMGFIRDIRKILDLLPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ +++  + NP  I VN  +STA T+E C         KK A +   L
Sbjct: 181 NLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQCIYPADV---KKKAPMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  ++F   K     L   L  Q  +  AIHGN  Q +R K L++FK G ++++
Sbjct: 238 IKDGDWKQVLVFTKTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV   +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFA 357

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKIDI 387
           IE+LI++ +    L G   +   P  K+D 
Sbjct: 358 IERLIQQLLPRKELEGYAPTNVLPESKLDT 387


>gi|153832249|ref|ZP_01984916.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
 gi|148871560|gb|EDL70415.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
          Length = 499

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 172/390 (44%), Positives = 237/390 (60%), Gaps = 6/390 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G   R    R L+L PTRELAAQV +N   Y ++  LT A++ GG+    Q  +L
Sbjct: 61  ERLSNGPRVRSNQVRALVLTPTRELAAQVQENVFMYSRHLPLTSAVVFGGVKINPQMLRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR+LD +N+  +  + +E+LV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 RKGADVLVATPGRLLDLYNQNAVKFDQLEMLVLDEADRMLDMGFIRDIRKILDLLPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ +++  + NP  I VN  +STA T+E C         KK A +   L
Sbjct: 181 NLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQCIYPADV---KKKAPMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  ++F   K     L   L  Q  +  AIHGN  Q +R K L++FK G ++++
Sbjct: 238 IKDGDWKQVLVFTKTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV   +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFA 357

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKIDI 387
           IE+LI++ +    L G   +   P  K+D 
Sbjct: 358 IERLIQQLLPRKELEGYAPTNVLPESKLDT 387


>gi|94990733|ref|YP_598833.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270]
 gi|94544241|gb|ABF34289.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270]
          Length = 539

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 142/371 (38%), Positives = 222/371 (59%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +        + + L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  NKIRTNE---NIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L+++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ +++     T   +E  +V    Q             
Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVEQYYVRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKQMKPL 365


>gi|222151982|ref|YP_002561142.1| hypothetical protein MCCL_1739 [Macrococcus caseolyticus JCSC5402]
 gi|222121111|dbj|BAH18446.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 498

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 132/393 (33%), Positives = 214/393 (54%), Gaps = 8/393 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+S   + A+   G+ +PTPIQ+ +IP  +   DV G AQTGTGKT +F +P++ 
Sbjct: 3   KFRDLGISEPTINALEKLGFTEPTPIQMDSIPHTMAGRDVLGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         ++LIL PTRELA QVA+  + + +   + V  + GG+P + Q ++L++
Sbjct: 63  KVKGR----EGIQSLILAPTRELAVQVAEQLKAFSRGQGIQVTTVFGGMPIDRQIRELKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++DH NR  L   +I  L++DEAD M++MGFI  ++ I   +P   +  
Sbjct: 119 KPQIVVGTPGRVIDHLNRRTLKTEDINTLILDEADEMMNMGFIDDMRFIMDKLPKENRQT 178

Query: 182 L-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + FSATM   +Q++ + F++NP  +      +  ++              +         
Sbjct: 179 MLFSATMPKAIQELVQKFMKNPVIV---KTMTNNDSDPSIEEFYTIVKELEKFDTFTNFL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++V
Sbjct: 236 DVHRPELAIVFGRTKRRVDELTSALISKGYRAEGLHGDITQAKRLEVLKKFKNDQIDILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+HG A + V   ++ +I  I
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDVESYTHRIGRTGRAGKHGMAISFVNPVEMDYIRQI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           EK   +++  L            + D+     A
Sbjct: 356 EKAKNRQMQALRPPTPGEVMKAREQDVKSKVKA 388


>gi|114052016|ref|NP_001039850.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus]
 gi|109825481|sp|Q29S22|DDX47_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
           Full=DEAD box protein 47
 gi|88758683|gb|AAI13208.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Bos taurus]
 gi|296487253|gb|DAA29366.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus]
          Length = 457

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 154/463 (33%), Positives = 245/463 (52%), Gaps = 36/463 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++  +  A    G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 27  TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 87  ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 143

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K      ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 144 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 203

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++          SK        + 
Sbjct: 204 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ---YYLFIPSKFKDTYLVYIL 260

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 261 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 320

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 321 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 380

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI KK+         +    E++  AQ                          + + +
Sbjct: 381 EHLIGKKLPVFPTQDDEVMMLTERVTEAQ--------------------------RFARM 414

Query: 421 PLKES-EKISKLQQDIQENDAD--SLGFRGNMPAFMLPKNRGK 460
            L+E  EK  + ++D+ +ND    ++G R  +    + K +G+
Sbjct: 415 ELREHGEKKKRSREDVGDNDDTEGAIGVRNKVAGGKMKKRKGR 457


>gi|119182910|ref|XP_001242554.1| hypothetical protein CIMG_06450 [Coccidioides immitis RS]
          Length = 388

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 117/376 (31%), Positives = 199/376 (52%), Gaps = 5/376 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           + L   ++  +   G+  P+ IQ + I  + +  D    AQ+GTGKTA+F + +L +++ 
Sbjct: 1   MHLKENLLRGIYAYGFESPSAIQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQVIDT 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
                +    L+L PTRELA Q+ +     G   N+     IGG       +KL+ G  V
Sbjct: 61  ALRETQA---LVLSPTRELATQIQNVIMAVGDYMNVQCHACIGGTNVGDDIRKLDHGQHV 117

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           +  TPGR+ D   R  L   +I++LV+DEAD +L  GF   I ++   +P   Q ++ SA
Sbjct: 118 VSGTPGRVADMIRRRHLRTRHIKMLVLDEADDLLARGFREQIYDVYRYLPPATQVVVLSA 177

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           T+  ++  ++  F+ +P RI V     T E ++  F+A   +  K   L         T+
Sbjct: 178 TLPYDVLSMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDL--YDTLTI 235

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              +IFCN ++ V  L   + +  F+V ++HG + Q+ R  I+ +F++G  ++++++D+ 
Sbjct: 236 TQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVW 295

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  IE    
Sbjct: 296 ARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIELYYS 355

Query: 366 KKVDWLNGDLSSLNPP 381
            ++D +  +   +  P
Sbjct: 356 TQIDEMPMNGKPIPTP 371


>gi|5270|emb|CAA36873.1| p68 protein [Schizosaccharomyces pombe]
          Length = 550

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 126/380 (33%), Positives = 201/380 (52%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+  PTPIQ +  P+ +   D+ GI+ TG+GKT S+ LP + 
Sbjct: 123 TFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIV 182

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      +    P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q   L
Sbjct: 183 HINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPLGPQILDL 242

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG ++ I TPGR+LD  +  K  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 243 IRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 302

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++FSAT   E+Q+++ ++L +  ++ V +    A       V       K+  L + + 
Sbjct: 303 TVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIE 362

Query: 240 QSQDTMKNGIIFCNQKKNV-VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +      N ++     K V  ++   L + G+   AIHG+  Q  R  +L+ F+ G   +
Sbjct: 363 EVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPI 422

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+  + HVFN+D P   E+Y+HRIGRTGRAG  G A+T    ++ K   
Sbjct: 423 MVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQAR 482

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    ++  L  +
Sbjct: 483 ELVSILSEAKQDIDPKLEEM 502


>gi|50556564|ref|XP_505690.1| YALI0F21032p [Yarrowia lipolytica]
 gi|74659647|sp|Q6C0X2|DHH1_YARLI RecName: Full=ATP-dependent RNA helicase DHH1
 gi|49651560|emb|CAG78499.1| YALI0F21032p [Yarrowia lipolytica]
          Length = 522

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 118/375 (31%), Positives = 181/375 (48%), Gaps = 7/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++  + +AG+  P+PIQ + IP+ L   D+   A+ GTGKTA+FV+P L  
Sbjct: 30  FEDFFLKRELLMGIFEAGFENPSPIQEEAIPIALAGRDILARAKNGTGKTAAFVIPALQQ 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +     +V   + LI+ PTRELA Q +   +  GK+  + V +  GG        +LE  
Sbjct: 90  V---NPKVNKIQALIMVPTRELALQTSQVCKTLGKHLGIKVMVTTGGTNLRDDIMRLEDT 146

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             VL+ TPGR+LD   +G   ++   + ++DEAD++L   F P I+ +    P  RQ LL
Sbjct: 147 VHVLVGTPGRVLDLAGKGVADLSESPMFIMDEADKLLSPDFTPIIEQVLHFFPEDRQILL 206

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    ++     F+                T+            K+       L S+
Sbjct: 207 FSATFPLTVKA----FMDRNLHKPYEINLMDELTLRGITQYYAFVDEKQKLHCLNTLFSK 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   IIFCN    V  L   + + G+S    H  + Q  R ++   F+ GT + +V S
Sbjct: 263 LDINQSIIFCNSTVRVELLARKITELGYSCYYSHAKMIQSHRNRVFHEFRNGTCRNLVCS 322

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+   D  ++  IE+
Sbjct: 323 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGIAINLINWNDRYNLYKIEQ 382

Query: 363 LIEKKVDWLNGDLSS 377
            +  ++  +   +  
Sbjct: 383 ELGTEIKPIPAQIDK 397


>gi|46580391|ref|YP_011199.1| ATP-dependent RNA helicase RhlE [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449808|gb|AAS96458.1| ATP-dependent RNA helicase RhlE [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311233634|gb|ADP86488.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1]
          Length = 462

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 149/465 (32%), Positives = 231/465 (49%), Gaps = 20/465 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADL LSP+++ A+   GY +PTP+Q   IP  L   DV  +A TGTGKTA+FVLPML
Sbjct: 1   MTFADLSLSPRLLAALDGMGYRQPTPVQRGAIPPALAGEDVLALAATGTGKTAAFVLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  G       R L++ PTRELA Q  D+  + G    L    + GG+   AQ  +L 
Sbjct: 61  QRLMDGPRGA--VRALVVAPTRELAEQTHDHVRRLGSMSRLRSTTIYGGVGVVAQALRLR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G +V++  PGR+LDH  RG L ++++E+LV+DE D + D+GF+  ++ +  +VP T Q 
Sbjct: 119 AGVEVVVGCPGRLLDHIRRGNLDLSSLEVLVLDEGDSLFDLGFLADVRMLLGMVPATCQR 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM D ++           R  V       +       A Y   +     L +   
Sbjct: 179 MLFSATMPDAVRV----LAAEALRQPVTVQVDAVQPASTVHHALYPVPAHLRTPLLKTFL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + ++F   +     L   L+  GFSV  + G + QR R+  L  F++G   ++V
Sbjct: 235 RSGPEGSVVVFVRTRHGARRLWQQLDNVGFSVTCLQGKLSQRRRLAALEGFRDGRYDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV N+DVP+ A+ YIHR+GRTGRA R+G A T V   D   +  I
Sbjct: 295 ATDVAARGLDISQVTHVVNYDVPSTADAYIHRVGRTGRAARNGTAMTFVTPADEAQVRNI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+++   +            P E++    +  A    P   +     R+ +  + ++   
Sbjct: 355 ERVLGTVI------------PRERLADFDYG-APVRGPEGARPAMPPRQPRLPAGKRPAA 401

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDKL 465
           P +  E+  + +     +          +P+  LP+      +++
Sbjct: 402 PQEAQEQPRRGRPRPPRHAVPPAAHPPTIPS-RLPRQTPAGAEQV 445


>gi|301059813|ref|ZP_07200707.1| putative ATP-dependent RNA helicase RhlE [delta proteobacterium
           NaphS2]
 gi|300446139|gb|EFK10010.1| putative ATP-dependent RNA helicase RhlE [delta proteobacterium
           NaphS2]
          Length = 429

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 142/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F      P+V   V+ AGYV PTPIQ + IP VL  HD+ G+AQTGTGKTA+FVLP+L
Sbjct: 1   MNFKTFNFHPRVAAGVVAAGYVDPTPIQARAIPQVLDNHDIMGVAQTGTGKTAAFVLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   +++    R LI+ PTRELA Q+    E  G+  ++    + GG+    Q + L+
Sbjct: 61  HRLMAKKSKG--VRALIMAPTRELAEQIHQAIEVLGRETHVKSVTVYGGVGIHPQIENLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+ C   R+LDH NR  +  + +E+LV+DEAD+M DMGF+P I+ I + +P  RQT
Sbjct: 119 HAHIVVACPG-RLLDHMNRKTVDFSRLEMLVVDEADQMFDMGFLPDIRRILARLPKKRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++++  + L NP  +++   +         +   +         L   L 
Sbjct: 178 LLFSATMPPEIRRLEGDILINPSMVQIGAVAPAETVRHALYPVPHH----LKTALLLKLL 233

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +K+ ++F   K    +L   L   G+   ++ GN+ Q  R   L  F++GT +++V
Sbjct: 234 GDTVVKSVLVFTRTKYRAKSLGKKLVSAGYPCASLQGNLSQGRRQAALEGFRDGTYKILV 293

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  V HV N+D+P+  E YIHRIGRTGRA R G+AFT +  ED   + AI
Sbjct: 294 ATDIAARGIDITRVSHVINYDIPSTPEAYIHRIGRTGRATRSGEAFTFMTGEDKGMVRAI 353

Query: 361 EKLIEKKVD 369
            ++++  ++
Sbjct: 354 NRILDASIE 362


>gi|148358461|ref|YP_001249668.1| DEAD box family transporter ATP-dependent RNA helicase [Legionella
           pneumophila str. Corby]
 gi|148280234|gb|ABQ54322.1| ATP-dependent RNA helicase, DEAD box family [Legionella pneumophila
           str. Corby]
          Length = 414

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 161/417 (38%), Positives = 236/417 (56%), Gaps = 14/417 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  L L   +  AV + GY  PT IQ+K IPL+L  HD+ G AQTGTGKTASFVLP+ 
Sbjct: 1   MSFKQLALIEPLNRAVSELGYTNPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               ++ +      + LIL PTRELA QV ++  +YGK   L  A++ GG+    Q K+L
Sbjct: 61  QKASQQTQTSRNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++L+ TPGR+LD + +G +  + I+ LV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 DSGLEILVATPGRLLDLYQQGAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT T E++ ++ N L     I++   ++  +TI+    +    +           
Sbjct: 181 NLLFSATFTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSHLLHK 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       ++F   K     L   L +      AIHGN  Q  R K L++FK G +Q +
Sbjct: 241 NNW---GQTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKVQTL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI  +  V NFD+P+  E+Y+HRIGRTGRAG  G A +LV+ E+IK + +
Sbjct: 298 IATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKLLLS 357

Query: 360 IEKLIEKKVDWLNG-------DLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           IEKLI +K++ +         + S L +  ++K   A      K N   +  T F++
Sbjct: 358 IEKLINQKLERIKIKDFEFLHNFSDLVSAKIQK--FAPPKAGYKGNISRKSRTAFNK 412


>gi|145611832|ref|XP_001411591.1| hypothetical protein MGG_11672 [Magnaporthe oryzae 70-15]
 gi|152060562|sp|A4RGD1|RRP3_MAGO7 RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|145019073|gb|EDK03352.1| hypothetical protein MGG_11672 [Magnaporthe oryzae 70-15]
          Length = 538

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 143/433 (33%), Positives = 228/433 (52%), Gaps = 14/433 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +  A     + KPTPIQ + IPL LQ  DV GIA+TG+GKTA+F LP+L 
Sbjct: 111 SFRDLGIVEPLCEACEALKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQ 170

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    L+L PTRELAAQ+   FE  G + +L  A+++GG+   +Q+  L +
Sbjct: 171 SL---LEKPQPLFGLVLAPTRELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSTALGK 227

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +          + +++ LV+DEADR+LD+ F P +  I   +P  R+T
Sbjct: 228 KPHIVVATPGRLLDHLEKTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILKFLPRERRT 287

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L++P +  V+  SS  +T+            K   +    L 
Sbjct: 288 FLFSATMSSKVESLQRASLRDPLK--VSVSSSQEKTVSTLIQNPLFIPHKHKDVYLIYLA 345

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   K  I+F         +   L    F    +HG + Q  R+  L+ FK  +  ++V
Sbjct: 346 NEFAGKTTIVFTRTVNEAQRVSILLRTLSFGAIPLHGQLSQSMRLGALNKFKARSRDILV 405

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP+V  V NFD+P  +  YIHR+GRT RAGR G+A +++ + D++    I
Sbjct: 406 ATDVAARGLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLELWLRI 465

Query: 361 EKLI--EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF-----DRRKKNY 413
           EK     +K+     D   +    E+++ AQ  HAR+      +  G        RK+  
Sbjct: 466 EKAALNGRKLPLFQPDKEEVMVFKERVEEAQ-RHAREEMKALHEDRGKKGAVLKGRKRGS 524

Query: 414 SSQKSHIPLKESE 426
           ++++ H  +   E
Sbjct: 525 ATKRRHDDMDAEE 537


>gi|255101321|ref|ZP_05330298.1| ATP-dependent RNA helicase [Clostridium difficile QCD-63q42]
          Length = 497

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 136/431 (31%), Positives = 234/431 (54%), Gaps = 11/431 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L+ K++ ++   GY  P+ +Q + IP +L+  ++   ++TG+GKTASF +P+  
Sbjct: 4   TFEKFKLNEKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLCE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +      ++    LI+ PTRELA QV D     G+   +  + + G    + Q  +L++
Sbjct: 64  NINVDYNNIQA---LIVVPTRELALQVKDEISDIGRLKKVRCSAIFGKQSIKDQIAELKQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NRG + + N++ LVIDEAD+M + GF+  ++ I   +P  +   
Sbjct: 121 RVHIVVATPGRILDHINRGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVS 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCALLQQLLQ 240
           LFSAT+ +E++ + E ++ +   I +    S              + + ++  +L + L 
Sbjct: 181 LFSATIDEEIKYICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYILLKELI 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  K+ IIFCN K+ V  L + + K+GF +  +H ++ Q  R+ ++ +FK     ++V
Sbjct: 241 YSENPKSVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQKFNILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +SD+A+RG+ I D+  V N+DVP   ENYIHRIGRTGR G  GKA T+V ++D K+I+ I
Sbjct: 301 SSDVASRGIHIDDISLVINYDVPQDKENYIHRIGRTGRKGNSGKAITIVTEKDEKYIENI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  I  K++ L  D+        K+   +++       I +K +   +  KN S +   I
Sbjct: 361 ETYIGYKINELK-DIEKSRITHGKVLFEEYSKG-----ILKKVSKRKKVDKN-SYKSKDI 413

Query: 421 PLKESEKISKL 431
            L    ++ KL
Sbjct: 414 KLNIESEVVKL 424


>gi|311087784|gb|ADP67863.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 601

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 138/372 (37%), Positives = 226/372 (60%), Gaps = 8/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ LGL+P ++ ++ + GYVKP+PIQ   IPL+L+  DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFSFLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLH 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA-QNKKLE 120
            L      ++ P+ L+L PTRELA QVA+ F  + K       L + G      Q + L 
Sbjct: 67  NLNIN---LKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMAQIPKEHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + ++++S+ F++NPK I++ +  +T   I+  +   Y + +       +   
Sbjct: 184 ALFSATMPEAIRRISKRFMRNPKEIKIQSNITTRPDIKQSYWMVYGRKTDALIRFLE--- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K G + +++
Sbjct: 241 -AEDFSATIIFVRTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKNGRLDILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 359

Query: 361 EKLIEKKVDWLN 372
           E+ +++ +  + 
Sbjct: 360 ERTMKQSIPEVQ 371


>gi|301765212|ref|XP_002918022.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
           [Ailuropoda melanoleuca]
          Length = 455

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 144/463 (31%), Positives = 232/463 (50%), Gaps = 36/463 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++  +  A    G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 25  TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++G            +
Sbjct: 85  ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      I    N     +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++          SK        + 
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ---YYLFIPSKFKDTYLVYIL 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI KK+         +    E++  AQ                          + + +
Sbjct: 379 EHLIGKKLPVFPTQEDEVMMLTERVTEAQ--------------------------RFARM 412

Query: 421 PLKES-EKISKLQQDIQENDA--DSLGFRGNMPAFMLPKNRGK 460
            L+E  EK  + ++D  +ND    ++G R  +    + K +G+
Sbjct: 413 ELREHGEKKKRTREDAGDNDDMEGAMGVRNKVAGGKMKKRKGR 455


>gi|291231214|ref|XP_002735561.1| PREDICTED: Ddx49-A-prov protein-like [Saccoglossus kowalevskii]
          Length = 445

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 153/429 (35%), Positives = 221/429 (51%), Gaps = 10/429 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ LGL+  +V      G  KPTPIQ   IP +L+  D  G A+TG+GKTA+F LP+L 
Sbjct: 13  KFSSLGLNDWLVKQCKAVGITKPTPIQYYCIPQILEGVDCLGCAKTGSGKTAAFALPILQ 72

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L            L+L PTRELA Q+A+ F   GK   L  A++IGG     Q   L  
Sbjct: 73  KL---CEDPYGIYALVLTPTRELAFQIAEQFRILGKPIGLKDAVIIGGRDVMRQGMDLAD 129

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V+I TPGR+ DH N         I+ LV+DEADR+L+  F   +Q I   +P  RQT
Sbjct: 130 KPHVVIATPGRLADHINSSNTFSLKKIKFLVLDEADRLLEDTFAEDLQVIFDALPEKRQT 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+TD+L+K+    L  P   +     +T E   +   +            + Q +
Sbjct: 190 LLFSATLTDKLEKLQTLALNKPFFWQSKAEIATVEQLDQKYVLIPAKVRDAYLVHILQKI 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+    + IIF N  KN  +L   L+   F    +H  I QR R+  L+ FK G ++++
Sbjct: 250 CSETEDYSMIIFSNTCKNCQSLYLMLKALEFPCTPLHSMIPQRDRIASLAQFKSGRVRIL 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLDIP V  V N +VP    +Y+HR+GRT RAGR G A TL+ + D+K I+A
Sbjct: 310 LATDVASRGLDIPIVQLVVNHNVPWSPIDYVHRVGRTARAGRGGMALTLMTQYDVKLIEA 369

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IEK I  K+     D   +   L ++ +A     ++   +  +   F  RK     +K  
Sbjct: 370 IEKQINTKLTEYPVDDKEVLTILNEVSVA-----KREAEMRLEEQDFGERKTINKRKKLI 424

Query: 420 IPLKESEKI 428
              +  +K+
Sbjct: 425 REGRNPDKV 433


>gi|15616977|ref|NP_240190.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681730|ref|YP_002468116.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682285|ref|YP_002468669.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471430|ref|ZP_05635429.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|11386733|sp|P57453|DEAD_BUCAI RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|25403610|pir||D84973 ATP-dependent RNA helicase deaD [imported] - Buchnera sp.  (strain
           APS)
 gi|10039042|dbj|BAB13076.1| ATP-dependent RNA helicase deaD [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219622018|gb|ACL30174.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624573|gb|ACL30728.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311086109|gb|ADP66191.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086682|gb|ADP66763.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087268|gb|ADP67348.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 601

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 138/372 (37%), Positives = 226/372 (60%), Gaps = 8/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ LGL+P ++ ++ + GYVKP+PIQ   IPL+L+  DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFSFLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLH 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA-QNKKLE 120
            L      ++ P+ L+L PTRELA QVA+ F  + K       L + G      Q + L 
Sbjct: 67  NLNIN---LKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMAQIPKEHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + ++++S+ F++NPK I++ +  +T   I+  +   Y + +       +   
Sbjct: 184 ALFSATMPEAIRRISKRFMRNPKEIKIQSNITTRPDIKQSYWMVYGRKTDALIRFLE--- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K G + +++
Sbjct: 241 -AEDFSATIIFVRTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKNGRLDILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 359

Query: 361 EKLIEKKVDWLN 372
           E+ +++ +  + 
Sbjct: 360 ERTMKQSIPEVQ 371


>gi|319441074|ref|ZP_07990230.1| ATP-dependent RNA helicase [Corynebacterium variabile DSM 44702]
          Length = 732

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 149/391 (38%), Positives = 224/391 (57%), Gaps = 13/391 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL  +++ AV   GYV P+PIQ  TIP ++  HDV G+AQTGTGKTA+F LP L+ 
Sbjct: 71  FAGLGLPDRILAAVEKVGYVTPSPIQAATIPALMDGHDVVGLAQTGTGKTAAFALPALSR 130

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+      R P+ L+L PTRELA Q AD FE +  +      L I  G P+ AQ   L R
Sbjct: 131 LDTTE---RHPQVLVLAPTRELALQSADAFESFASHIGGVSILPIYGGAPYGAQLSGLRR 187

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH  +G L ++++  LV+DEAD ML+MGF   ++ I +  P +RQ  
Sbjct: 188 GAQVIVGTPGRIIDHLEKGSLDLSHLRFLVLDEADEMLNMGFQEDVERILADTPDSRQVA 247

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++S+ +L +P+   V +   T + I   ++       +        +  
Sbjct: 248 LFSATMPSAIRRLSKQYLNDPQEYTVKSEQRTGDNITQDYLMVSH---RNKLDALTRILE 304

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIF   K +   L   L  +GF   AI+G+I Q  R + +   K+G + ++VA
Sbjct: 305 VTEFDAMIIFVRTKSDTEELADKLRARGFEAAAINGDIAQNQRERTVDQLKDGRLDILVA 364

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HVFN+D+P   E+Y+HRIGRTGRAGR G+A   V   + + +  IE
Sbjct: 365 TDVAARGLDVDRITHVFNYDIPRDTESYVHRIGRTGRAGRTGRAILFVTPRERRLLKNIE 424

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           +  +   + +        P +++++ A+ N 
Sbjct: 425 RATKSHPNEIQ------LPGVDEVNEARKNK 449


>gi|149187436|ref|ZP_01865734.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           shilonii AK1]
 gi|148838972|gb|EDL55911.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           shilonii AK1]
          Length = 442

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 129/439 (29%), Positives = 210/439 (47%), Gaps = 15/439 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL  +++  +    + K T IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKELGLDNRLLKNLSHYDFKKATDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +    R PR +IL PTRELA QV    +      +    L++GG  F  Q K L
Sbjct: 61  HKALKSKAFSARDPRAVILAPTRELAKQVYGELKSMLGGLSYDATLILGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH     L ++ ++ L++DEADRMLD+GF P ++ I +     R+
Sbjct: 121 RRYPKFIVATPGRLADHLEHRSLFLDGLDTLILDEADRMLDLGFAPELRRIHNAAKHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +              +    S  E  +         +      + + +
Sbjct: 181 QTLMFSATLDHAEVNDIAAEMLDAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILERI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   K  IIF   + +   L   L ++     A+ GN++Q  R  I+S F+    +++
Sbjct: 241 LEQAEYKQVIIFTATRVDTERLTKWLNEKKLKAVALSGNLNQTQRNAIMSQFERHVFKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RG+DI  V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D      
Sbjct: 301 VTTDVASRGIDIASVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKR 360

Query: 360 IEKLIEK-----KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +E  +++     +++ L G      P  +K    +   A K  P  +K+T     +++ +
Sbjct: 361 VEAFLQQDLTFSELEGLKGKFKGFRP--KKPAFNKKATATKGKPQQKKATTKKPAQRDKT 418

Query: 415 SQKS-------HIPLKESE 426
             K+        IP K+ +
Sbjct: 419 FYKNVAVGDSVFIPKKKPK 437


>gi|118602908|ref|YP_904123.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567847|gb|ABL02652.1| ATP-dependent RNA helicase CsdA [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
          Length = 606

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 164/430 (38%), Positives = 241/430 (56%), Gaps = 14/430 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLS  ++  +   GY  P+PIQ + I  +L   D+ G AQTGTGKTA+F LP+L 
Sbjct: 13  KFKCLGLSNTILKVLDAIGYETPSPIQEQCITHLLNGEDIIGQAQTGTGKTAAFSLPLLD 72

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++ G   + MP+ LIL PTRELA QV++  + Y +       L I G   ++ Q + L+
Sbjct: 73  KIDLG---INMPQLLILTPTRELAIQVSEAVQTYARGMKGFHVLPIYGGQSYDIQLRPLK 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG   ++ TPGR++DH  +G L +++++  V+DEAD ML MGFI  I+ I   +P  RQ 
Sbjct: 130 RGVHAIVGTPGRVMDHIKKGTLKLDHLKSFVLDEADEMLKMGFIDDIKWIMQRIPEQRQI 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++KV+E FL  PK +++ T + TA TI   +        K  AL + L  
Sbjct: 190 ALFSATMPSVIKKVAEQFLNQPKIVKIKTKTETATTITQKYCMVGGLSQKLEALTRILEV 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       IIF   K     L   L  +GFS  AI+G+I Q  R +I++N+K+G I +++
Sbjct: 250 TTFDAM--IIFVRTKTLTTELAEKLSARGFSAEAINGDIQQNQRERIITNYKKGKIDILI 307

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P  AE+Y+HRIGRTGRAGR G A   V+  + + ++ I
Sbjct: 308 ATDVAARGLDVERISHVVNYDIPQDAESYVHRIGRTGRAGRKGDAILFVSNRERRMLNTI 367

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ-KSTGFDRRKKNYSSQKSH 419
           E +  +K+       + +  P  KI  A+     K N      +   D  KK  S  +  
Sbjct: 368 EHITRQKI-------TPIELPSAKIINAKRIETFKQNIAQTINNQKLDIFKKLVSEFQQE 420

Query: 420 IPLKESEKIS 429
            P  E+ KIS
Sbjct: 421 NPEIETSKIS 430


>gi|269961058|ref|ZP_06175427.1| ATP-dependent RNA helicase RhlE [Vibrio harveyi 1DA3]
 gi|269834277|gb|EEZ88367.1| ATP-dependent RNA helicase RhlE [Vibrio harveyi 1DA3]
          Length = 411

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 154/422 (36%), Positives = 243/422 (57%), Gaps = 12/422 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV   GY KPT IQ K IP+VL+  ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSAPITDAVKALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G   R +  R +IL PTRELA QV  + E YGKN  L    + GG+ +  Q + L
Sbjct: 61  EKLSQGETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVDYAPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR++D + +  +  + +E+LV+DEAD+MLDMGFI  I  I   +P   Q
Sbjct: 121 IEGVDIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIVDCMPEDIQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT+++ ++ +++N + +P+ I   + +  + +  +             + L   +
Sbjct: 181 SLLFSATLSNPVRDLAKNAIVDPEEI---SIAKHSASKSNIKQWITTVDKDMKSSLLSHM 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++     ++F   K     L   LEK+G    A H   +QR R +++  FK G IQ +
Sbjct: 238 LNENDWSQVLVFIETKHGAAKLVTQLEKRGIVAEAFHSGRNQRVRQELIEQFKAGEIQYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI ++  V N+D+P  A+ Y+HRIGRTGRAG  G+A +LV+K+D K++  
Sbjct: 298 VATGVAARGIDIDNLPVVINYDLPFPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCM 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE  +   ++ +  +  +   P + + I+  N+  KN   PQ     D+R ++ +  K +
Sbjct: 358 IESRLGHLLERVEIEGFA---PRKPVPISILNYVPKNKRKPQ-----DQRPRHDAGDKRN 409

Query: 420 IP 421
             
Sbjct: 410 AK 411


>gi|221105444|ref|XP_002161749.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 1335

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 137/450 (30%), Positives = 231/450 (51%), Gaps = 19/450 (4%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
             ++  G+S KV+  +    Y KPTPIQ + IP ++   D+ GIA+TG+GKT +F++P+  
Sbjct: 674  TWSQAGVSTKVLAVLKKLKYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTLAFLIPLFR 733

Query: 62   ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +           P  +I+ PTRELA Q+    +K+ K  NLT A + GG     Q  +L
Sbjct: 734  HVIDQPPLDENDGPIAIIMTPTRELALQIFREAKKFCKQLNLTAACIYGGSGISEQIAEL 793

Query: 120  ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            ++GA++++CTPGR++D     N           LV+DEADRM DMGF P +  I   +  
Sbjct: 794  KKGAEIIVCTPGRMIDMLTANNGRVTNCRRCTYLVMDEADRMFDMGFEPQVMRILDNIRP 853

Query: 177  TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             RQT+LFSAT   +++ ++   L  P  ++V   S           A   +   K   L 
Sbjct: 854  DRQTVLFSATFPRQMEAIARKVLNKPIEVQVGGRSVVCSD--VEQHALVIEEENKFFKLL 911

Query: 237  QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +LL       + ++F  ++++   L   L K  +   ++HG +DQ  R   +++FK G  
Sbjct: 912  ELLGVYQEKGSVLVFVEKQESADMLFKDLLKNAYPCLSLHGGMDQFDRDSTIADFKNGVT 971

Query: 297  QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +LMV++ +AARGLD+ ++  V N+D PN  E+Y+HR+GRTGRAG  G +FT +  E  ++
Sbjct: 972  KLMVSTSVAARGLDVKNLVLVLNYDCPNHYEDYVHRVGRTGRAGNKGTSFTFITPEQGRN 1031

Query: 357  IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN--NPIPQKSTGFDRRKKNYS 414
               I K  E         L+   PP + +++               + + GF  +   ++
Sbjct: 1032 AGDIIKAFE---------LAKCTPPTDVMELWNKFKLEMQLAGKTLKSNCGFSGKGFKFN 1082

Query: 415  SQKSHIPLKESEKISKLQQDIQENDADSLG 444
            +    I + +++K+ K    +Q++D ++  
Sbjct: 1083 A-DEEIQVSDAKKMQKFSLGLQDSDDEAEA 1111


>gi|156362250|ref|XP_001625693.1| predicted protein [Nematostella vectensis]
 gi|156212537|gb|EDO33593.1| predicted protein [Nematostella vectensis]
          Length = 446

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 140/404 (34%), Positives = 216/404 (53%), Gaps = 7/404 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+   +  A    G+  P+ IQ + IP+ LQ  DV G+A+TG+GKT +F LP+L 
Sbjct: 15  TFKSLGVVDALCEACKQLGWKTPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILQ 74

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     R+     LIL PTRELA Q+++  E  G    +  A+++GGI   +Q   L +
Sbjct: 75  ALLDNPQRLFA---LILTPTRELAFQISEQCEALGSGIGVKCAVIVGGIDMMSQALMLAK 131

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K      ++ LV+DEADR+L+M F   +  +  ++P  R+T
Sbjct: 132 KPHIIIATPGRLIDHLENTKGFSLRTLKYLVMDEADRILNMDFEKEVDKLLKVIPKERRT 191

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    LQ P ++EV T   T E ++    +     SK        + 
Sbjct: 192 FLFSATMTKKVQKLQRASLQAPVKVEVATKYQTVEKLQQ---SYLFIPSKFKDCYLVYVL 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + ++FC    NV  +   L   G     +HG + Q  R+  L+ FK  +  ++V
Sbjct: 249 NELAGNSFMVFCGTCNNVQRVTLMLRNLGLDAVPLHGQMSQSKRLGALNKFKSKSRSILV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR G++ T V + D++    I
Sbjct: 309 ATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGRSVTFVTQYDVELYQRI 368

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           E LI KK+         +   +E++  AQ     +   I  K  
Sbjct: 369 EHLIAKKLPQYPTVEEEVMLLMERVTEAQRYARMELREINDKKK 412


>gi|254369445|ref|ZP_04985457.1| hypothetical protein FTAG_00428 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122395|gb|EDO66535.1| hypothetical protein FTAG_00428 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 441

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 151/403 (37%), Positives = 237/403 (58%), Gaps = 8/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+  +  A+   GY KPTPIQ + IP+VL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MKFSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++   ++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSGVIFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  +  +++   V+DEADRMLDMGFI  ++ I +L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++  FL NP+ +  +  ++T + I                +     
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   ++F   K     +   L   G S  AIHGN  Q +R K L++FK   I ++
Sbjct: 238 IKDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+ N AE+Y+HRIGRTGRAG+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           IE LI   +  + L G  ++ N P+  +  +  N A+K + + 
Sbjct: 358 IEHLIGHLLPREELEGFEATHNVPITSM--SHKNKAKKIDEVK 398


>gi|320103060|ref|YP_004178651.1| DEAD/DEAH box helicase domain-containing protein [Isosphaera
           pallida ATCC 43644]
 gi|319750342|gb|ADV62102.1| DEAD/DEAH box helicase domain protein [Isosphaera pallida ATCC
           43644]
          Length = 422

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 137/370 (37%), Positives = 218/370 (58%), Gaps = 6/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGLS   + A+    Y  P+PIQ   IP  L+  DV G A+TGTGKTA+F LP++ 
Sbjct: 14  SFAELGLSRLTLAALKTVNYRVPSPIQAAFIPPALEGRDVIGQAKTGTGKTAAFSLPLIE 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           + E G+     P+ +IL PTREL  Q+   FE+  +  +L V  + GG P E Q + L +
Sbjct: 74  MHEPGQ---PGPQAIILAPTRELVQQICGEFERLARGRDLVVRGIYGGEPIERQLRSLAK 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR++DH  RG + +  +  +V+DEADRMLD+GF P I+ I   VP   QTL
Sbjct: 131 GVDVVVGTPGRVIDHLQRGTMSLEGVYHVVLDEADRMLDIGFRPDIERILRKVPQPHQTL 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT++ E+++++  ++  P  + ++    + E I   ++            L   L  
Sbjct: 191 LLSATLSPEVRRLAARYMHEPVELNLSRDEPSVEKIVQKYIPVDHNRK---MELLLHLLE 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  I+FC  K+    L   L ++   V  IHG++ Q +R +++  F++G+I ++VA
Sbjct: 248 LEKPRQCIVFCRTKRGADKLAQRLARRYPGVATIHGDLPQTARNRVMRGFRDGSIPILVA 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+  RG+D+ ++ HV N+D+P+  ENY+HRIGRTGR G+ G A+T V  ++   +  IE
Sbjct: 308 TDVVGRGIDVEEISHVVNYDIPDDPENYLHRIGRTGRMGKDGVAYTFVGPDEGIPLTNIE 367

Query: 362 KLIEKKVDWL 371
            LI K ++ +
Sbjct: 368 VLINKTLERV 377


>gi|257463152|ref|ZP_05627553.1| ATP-dependent RNA helicase [Fusobacterium sp. D12]
 gi|317060745|ref|ZP_07925230.1| ATP-dependent RNA helicase [Fusobacterium sp. D12]
 gi|313686421|gb|EFS23256.1| ATP-dependent RNA helicase [Fusobacterium sp. D12]
          Length = 528

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 127/368 (34%), Positives = 207/368 (56%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F DLG+  K++ A+   GY  PTPIQ  TIP +L    D+ G AQTGTGKTA+F LP+L
Sbjct: 9   EFRDLGIGEKLLKALSKKGYETPTPIQSLTIPALLTGEKDIIGQAQTGTGKTAAFALPIL 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +E         + ++L PTRELA QVA+     G +  + +  + GG   + Q K L 
Sbjct: 69  ENIEHQDK----IQGIVLTPTRELALQVAEEMNSLGSSKKIKIIPVYGGQSIDIQRKLLR 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+++ TPGR++D   R  L + +++  ++DEAD ML+MGF+  ++ I       ++ 
Sbjct: 125 TGADIIVGTPGRVIDFIERKFLRLQDLKYFILDEADEMLNMGFLEEVEKILEATNEDKRM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM +E+ KV++  +++ + + V     T +         +    +        + 
Sbjct: 185 LFFSATMPNEILKVAKKHMKDYEILAVKARELTTDLT---DQIYFEVNERDKFEALCRII 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  GI+FC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I ++V
Sbjct: 242 DLAEDFYGIVFCRTKTDVNEVVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKARKINILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV N+ +P  AE+Y+HRIGRTGRAG+ G A T +  ++ + +  I
Sbjct: 302 ATDVAARGIDVNDLSHVINYAIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 361

Query: 361 EKLIEKKV 368
           +++++ ++
Sbjct: 362 QRIVKTEI 369


>gi|238760236|ref|ZP_04621381.1| DEAD/DEAH box helicase domain protein [Yersinia aldovae ATCC 35236]
 gi|238701559|gb|EEP94131.1| DEAD/DEAH box helicase domain protein [Yersinia aldovae ATCC 35236]
          Length = 660

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 140/378 (37%), Positives = 231/378 (61%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS  ++ A+ D GY KP+PIQ++ IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 8   SFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLH 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     ++ P+ L+L PTRELA QVA     + K+ +    + +  G  ++ Q + L 
Sbjct: 68  NIDPT---LKAPQVLVLAPTRELAIQVAQALTDFSKHMSGVNVVALYGGQRYDVQLRALR 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + +P   QT
Sbjct: 125 QGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPAEHQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   F      Y+KK AL++    
Sbjct: 185 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSFWRVGGGYNKKEALVR--FL 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 243 ESEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLDRLKDGRLDILI 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  +
Sbjct: 303 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNV 362

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 363 ERTMKLTIPEVQLPNAEL 380


>gi|227112581|ref|ZP_03826237.1| ATP-dependent RNA helicase DeaD [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 627

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 135/378 (35%), Positives = 224/378 (59%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   SFADLGLNTSILNALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+ +    + +  G  ++ Q + L 
Sbjct: 67  NLKP---ELKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + +P   QT
Sbjct: 124 GGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F+++P+ + + +  +T   I   +                   
Sbjct: 184 ALFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTVQGMRKNDA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  +
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|194364258|ref|YP_002026868.1| DEAD/DEAH box helicase domain-containing protein [Stenotrophomonas
           maltophilia R551-3]
 gi|194347062|gb|ACF50185.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 471

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 168/424 (39%), Positives = 244/424 (57%), Gaps = 22/424 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PTPIQ + IPLVL   D+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGRDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L      V    R PR LIL PTRELA QV D+   Y K   +  A + GG+    Q 
Sbjct: 61  QHLGTASQEVRTGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L RG D+L+  PGR++DH  R  + ++ IE+LV+DEADRMLDMGF+P I+ I + +P 
Sbjct: 121 DILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPK 180

Query: 177 TRQTL-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +   LFSAT  D +++++  F++NP++I+V   ++ AETI H          +   L 
Sbjct: 181 QNRQTLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDGGRKRDLLLH 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                S+   +  ++F   K     L   LEK G    AIHGN  Q  R++ L +FK G 
Sbjct: 241 LLAQDSR---EQTLVFARTKHGSDKLAAFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGR 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARG+DI ++  V NFD+P  AE+Y+HRIGRTGR G  G+A +LVA++++K
Sbjct: 298 VTVLVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVK 357

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS---TGFDRRKKN 412
            + AI +L+ + +D  +     L  P+           R  N  P K+   TG    +KN
Sbjct: 358 LLRAITRLLGRDMDIRDVPGFELQVPI-----------RWGNSAPGKAEHETGERAPRKN 406

Query: 413 YSSQ 416
           ++ +
Sbjct: 407 HARR 410


>gi|188578674|ref|YP_001915603.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188523126|gb|ACD61071.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 460

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 164/455 (36%), Positives = 242/455 (53%), Gaps = 13/455 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PT IQ + IPLVL  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      V  PR     IL PTRELA QV D+   Y K   +  A++ GG+    Q  
Sbjct: 61  QHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+LI  PGR++DH  R  + ++ IE+L++DEADRMLDMGF+P I+ I + +P  
Sbjct: 121 TLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180

Query: 178 RQTL-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +   LFSAT  + +++++  F++NP +I+V   ++ AE+I H          +   L  
Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               S+   +  ++F   K     L   LEK G    AIHGN  Q  RM+ LS+FK G +
Sbjct: 241 LAQDSR---EQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LVA+++ K 
Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  I +++ + V+    D+    P    I        R   P   ++      ++ +   
Sbjct: 358 LRQIVRMLGRDVEI--RDVPGYEPQT-PIRWGNSAPGRAEQPGGDRAPRKSHARRPHGDA 414

Query: 417 KSHIPLKESEKISKLQQD---IQENDADSLGFRGN 448
                     K    Q+     Q N     G R +
Sbjct: 415 PRQAHAHAGPKKPGGQRSGGPRQANAGPGAGRRDD 449


>gi|167950812|ref|ZP_02537886.1| DEAD/DEAH box helicase domain protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 415

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 159/420 (37%), Positives = 241/420 (57%), Gaps = 7/420 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTA--SFVLP 58
           M F  LGLS  ++ AV + GY + TP+Q + IP++L   DV   AQTGTGKTA  +  L 
Sbjct: 1   MSFEKLGLSGPILRAVSEQGYTQTTPVQQQAIPVILSGRDVMAGAQTGTGKTAGFTLPLL 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L          R  R L+L P RELAAQV ++ E+YGK   L   ++ GG+    Q +K
Sbjct: 61  ELLEEHAQGKGRRPVRALVLTPNRELAAQVGESVEQYGKYLPLKSTVIFGGVKINPQIEK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+L+ TPGR+LDH ++  L +++IEILV+DEADRMLDMGFI  I+ +  L+P  R
Sbjct: 121 LRHGVDILVATPGRLLDHVSQKTLDLSHIEILVLDEADRMLDMGFIHDIRKVLRLLPHER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT + E+++++ + L  P++IEV   ++ AE +            ++       
Sbjct: 181 QNLLFSATYSQEIKRLASDLLNQPEQIEVARRNTAAELVSQVVYPVDKARKREL---LSH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   +  +  ++F   K     L   LEK G S  AIHGN  Q +R + L+NFK G +++
Sbjct: 238 MIGANNWRQVLVFTRTKHGANRLAQQLEKDGLSAAAIHGNKSQGARTRALANFKSGEVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRAG  G+A +LV  ++ K + 
Sbjct: 298 LVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGNEGEAVSLVCIDEHKLLR 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IE+L+++K+      L    P  +    ++    R      ++     + ++  S  +S
Sbjct: 358 DIERLLKRKITE--KVLPGYEPGTQASRQSRSGQGRGAPGGQRQGRRSGQPQQRRSEGRS 415


>gi|330836276|ref|YP_004410917.1| DEAD/DEAH box helicase domain-containing protein [Spirochaeta
           coccoides DSM 17374]
 gi|329748179|gb|AEC01535.1| DEAD/DEAH box helicase domain protein [Spirochaeta coccoides DSM
           17374]
          Length = 634

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 138/369 (37%), Positives = 212/369 (57%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           + FADLGLS + +  +   G+ +PT IQ + IPL+L    DV G A+TGTGKTA+F +P+
Sbjct: 5   VTFADLGLSARTLDVLKKKGFEEPTQIQKECIPLLLHEKTDVIGQARTGTGKTAAFGIPI 64

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  +++  + V+    LIL PTRELA QVAD       +  L++A + GG     Q ++L
Sbjct: 65  LETVDEHDSTVQA---LILAPTRELAVQVADEISSMRPSSGLSIAAIYGGASMSLQLRQL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG  +++ TPGR+ DH +RG L + N++ +V+DEAD MLDMGFI  I+NI S  P  ++
Sbjct: 122 HRGVQIVVGTPGRVQDHLDRGTLNLENLKFMVLDEADEMLDMGFIEDIENILSRTPADKR 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSATM   +Q +++ F+++PK + V +   T                 +       +
Sbjct: 182 MLCFSATMPAPIQNLAQRFMKDPKIVRVVSQDMTNLLTNQVCYEVRESDKLEALCRVIDV 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   G++FC  K     +   L  +G    A+HG++ Q+ R  IL+ F+   + ++
Sbjct: 242 AVDFY---GLVFCRTKLQCDEVTEKLVARGQDADALHGDLSQKQREAILNRFRRRQLSVL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIPD+ HV N+ +P   E YIHRIGRTGRAGR G A T +   +   +  
Sbjct: 299 VATDVAARGIDIPDLTHVINYSIPQNPEAYIHRIGRTGRAGRSGTAVTFITPREYSKLKY 358

Query: 360 IEKLIEKKV 368
           I+++   ++
Sbjct: 359 IQRIAHTEI 367


>gi|226229150|ref|YP_002763256.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
 gi|226092341|dbj|BAH40786.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
          Length = 498

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 141/432 (32%), Positives = 218/432 (50%), Gaps = 7/432 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P +   + + G+ +PTPIQ + IP  L+  DV   A TG+GKT +F+LP+L
Sbjct: 3   MTFSSLQLHPSLQQGLKELGFARPTPIQGEAIPPALEGRDVLACAMTGSGKTYAFLLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L          R L+L PTRELAAQ+ ++ +    +  LT A + GG+    Q     
Sbjct: 63  HQLMSKPR--GNTRALVLTPTRELAAQILESLQDVTTHTPLTGAAVFGGVGMGPQEHAFR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR+LDHF +    ++ +E LV+DEADRMLDMGF+P I+ I   +P  ++ 
Sbjct: 121 SGVDVIVATPGRLLDHFRQPYAKLDQLEYLVLDEADRMLDMGFLPEIKKILRHLPNRKRQ 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LF +             + N          +         V   +Q  K   L+  L +
Sbjct: 181 TLFFSATMPPPIAALTQEMLNKPVTLNLQRQAAPAKGITQAVYPVSQELKSALLVALLKR 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F   K     L   L   G     IHGN  Q  R + L+ FK+G+ Q++V
Sbjct: 241 GDM--PQALVFTRTKHRANRLASQLVTAGIKAERIHGNRSQSQRTQALAGFKDGSYQVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  +GHV NFDVP  AE+YIHR+GRT RA   G+AFT V+ E+   +  I
Sbjct: 299 ATDIAARGIDVEALGHVVNFDVPVAAEDYIHRVGRTARAEATGEAFTFVSPEEEGELKLI 358

Query: 361 EKLIEKKVDWLN-GDLSSLNPPLEKID--IAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           E+ I++ +  +   D      P +K++  IA+     +      ++    +  +  ++Q+
Sbjct: 359 ERAIKRALPRVTVPDFDYHAKPTQKLEVPIAERIAEIRKKKAEDRARAAAKVARRTAAQE 418

Query: 418 SHIPLKESEKIS 429
           S    K ++   
Sbjct: 419 SEAARKSAKDAK 430


>gi|158334865|ref|YP_001516037.1| DEAD/DEAH box helicase [Acaryochloris marina MBIC11017]
 gi|158305106|gb|ABW26723.1| DEAD/DEAH box helicase [Acaryochloris marina MBIC11017]
          Length = 471

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 141/372 (37%), Positives = 218/372 (58%), Gaps = 5/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGLS   V  +   G+  PT IQ + IP +L   D+ G AQTGTGKTA+F LP+L
Sbjct: 3   LTFSQLGLSQTRVDCLEALGFTTPTQIQAEAIPHLLAGRDIIGQAQTGTGKTAAFSLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+     V+ P+ LIL PTRELA QV++   ++  +  L V  + GG   + Q  +L 
Sbjct: 63  EQLDPT---VKTPQALILTPTRELAVQVSEAVYQFKADGALRVVAIYGGQSIDRQISQLR 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +++ TPGR+LD  +RG+++++ +   V+DEAD ML+MGFIP ++ I   VP  R+T
Sbjct: 120 RGAQLIVGTPGRVLDLLSRGEIILDQLSWFVLDEADEMLNMGFIPDVRKILERVPGDRKT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM  E+ K+S+ FL +P  + V  P +    I          +++  + + Q + 
Sbjct: 180 AFFSATMAPEIYKLSKQFLNDPVTVTVEQPKAAPTRINQVAYRIPRTWAR--STVLQAVL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  ++ IIF   ++    L   L+  G+S    HG++ Q  R ++L  F++  I+ +V
Sbjct: 238 ELEDPESAIIFVRTRREAATLTQQLQTAGYSADEYHGDLSQSQRERLLDRFRQRRIRWVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL + D+ HV N++ P+  E+Y+HRIGRTGRAG  G A +LV   D   +  I
Sbjct: 298 ATDIAARGLHVDDLSHVINYEPPDSVESYVHRIGRTGRAGNEGTAISLVHALDRWKLHEI 357

Query: 361 EKLIEKKVDWLN 372
           EK I +++  L 
Sbjct: 358 EKHIRQEIPTLP 369


>gi|307135861|gb|ADN33729.1| helicase [Cucumis melo subsp. melo]
          Length = 413

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 194/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  SFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G   +   + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 101 QLDYG---LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I + V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V  ED + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     ++ L  +++ L
Sbjct: 396 KFYNVIIEELPANVADL 412


>gi|126664124|ref|ZP_01735117.1| possible ATP-dependent RNA helicase [Flavobacteria bacterium BAL38]
 gi|126623838|gb|EAZ94533.1| possible ATP-dependent RNA helicase [Flavobacteria bacterium BAL38]
          Length = 419

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 159/421 (37%), Positives = 236/421 (56%), Gaps = 13/421 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F DL L   +  A+ + GY  PTPIQ + IP +L   D+   AQTGTGKT +F +P+ 
Sbjct: 1   MTFNDLKLYNNIQQALEEEGYTNPTPIQEQAIPEILLGQDLVACAQTGTGKTGAFAIPIL 60

Query: 60  --LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             +  +     + +  RTL++ PTRELA Q+ ++F+ YGK  N+   ++ GG+    Q  
Sbjct: 61  NLIHKIVGSAKKAKHIRTLVVTPTRELAIQIDESFKTYGKYTNVKSLVIFGGVNQVPQVN 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L+ G DVLI TPGR+LD   +G + ++++  LV+DEAD+MLDMGFI  ++ I  L P  
Sbjct: 121 ELKMGIDVLIATPGRLLDLHKQGFIDLDHLHHLVLDEADQMLDMGFINDVKKIIKLTPDN 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM   ++++++ FL  PK I V   SSTAE +            +      +
Sbjct: 181 RQTLLFSATMPIAIRELADTFLTRPKYISVTPISSTAENVSQKVYFVNKDDKRLL---LK 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++++ N ++F   K    N+   L+K      AIHG+  Q +R ++L  FK   I 
Sbjct: 238 QLIIEESLSNALVFTRTKHGADNIVKVLKKAHIKAEAIHGDKSQNARQRVLEQFKNKEID 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  +  V NFD+PN +E Y+HRIGRTGRAG  G A +   K++  + 
Sbjct: 298 ILVATDIAARGIDIEQLPFVINFDIPNISETYVHRIGRTGRAGNSGLAISFCGKDEKPYW 357

Query: 358 DAIEKLIEKKVDWLNG-----DLSSLNPPLEKIDIAQHNHARKN-NPIPQKSTGFDRRKK 411
             IEKLI  KV  +           +NP   K D+   +  + N N   +KS    + KK
Sbjct: 358 LDIEKLIRMKVKIVTEHQYTWKDEEVNPD-AKPDLRNKDKNKMNPNSNSRKSEASKKNKK 416

Query: 412 N 412
            
Sbjct: 417 R 417


>gi|147918815|ref|YP_687459.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
 gi|110622855|emb|CAJ38133.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
          Length = 451

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 121/383 (31%), Positives = 199/383 (51%), Gaps = 8/383 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  V+ A+   G+ + T IQ  TIPL L+  DV G A TGTGKTA+F +PM+ 
Sbjct: 3   SFENLKLSEPVMKALASMGFEESTHIQDSTIPLALKGKDVIGQAPTGTGKTAAFGIPMIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I +   +   +  T   E   +++ ++    +  G                +   +K + 
Sbjct: 63  ICDNSPSIQAIVITPTRELAIQVSEELNKIGQFKGIRALPIYGGQEYKWQMKGLKEKPQI 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +     +  +  N++++LV+DEAD MLDMGFI  I  +   +P  RQTL
Sbjct: 123 ---IVATPGRLMDHLTKQKSIKGNDVKMLVLDEADEMLDMGFIDDIYAVMEKLPAERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM+ E++K++   ++ P  +   +    +  I          +          +  
Sbjct: 180 LFSATMSPEIKKIAVELMKKPHIVGQESKKVKSPAISQ---HYVEVHESGKFEALCRILD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K  V  L   L ++G++   +HG++DQ+ R  I+  FK G  Q++VA
Sbjct: 237 TQCPDLAIVFVRTKVRVDELQEGLTRRGYAAVGLHGDMDQQRRNSIMKQFKNGKTQVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI DV HVFNFD+P   E+Y+HRIGRTGRAG+ G + T V   +IK +  IE
Sbjct: 297 TDVAARGLDISDVSHVFNFDIPRDPESYVHRIGRTGRAGKSGISITFVTFREIKLLKLIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
           ++  ++++ +  ++ +L   +E+
Sbjct: 357 QVSARRMERM--EVPTLEEAIEE 377


>gi|95928576|ref|ZP_01311323.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
 gi|95135366|gb|EAT17018.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
          Length = 587

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 134/377 (35%), Positives = 219/377 (58%), Gaps = 7/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LG++  ++ A+ D GY +P+PIQ ++IP++ + H++ G AQTGTGKTA+F LP+L 
Sbjct: 5   DFSALGIASPLLQALTDLGYQQPSPIQEQSIPILNEGHNLLGTAQTGTGKTAAFGLPLLG 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++      + P+ L+L PTRELA QV++  + + K       L + G  P   Q K L 
Sbjct: 65  KIDPS---KKYPQMLVLAPTRELAIQVSEALQSFAKYLPKVKVLAVYGGQPMYQQLKALH 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  V++ TPGRI+DH  R  L +  I  +V+DEAD ML MGFI  ++ I    P   Q 
Sbjct: 122 DGVQVVVGTPGRIMDHMERKSLRLEQISAVVLDEADEMLRMGFIEDVETILGATPPRCQC 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   +++V+E +L + + +++ + +ST + IE  ++   A        +   L 
Sbjct: 182 ALFSATMPPAIRRVAERYLGDAQEVQIASRTSTVDQIEQRYLMLRANQK---FDVLTRLI 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   I+F   K     L   LE +G++   ++G++ Q+ R + +   K G++ +++
Sbjct: 239 EAQEIDGTIVFVRTKTATTELAERLEARGYNAAPLNGDLSQQVRERTIGRLKNGSLDIVI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HVFN+D+P   E YIHRIGRTGRAGR G A   V  ++ + + +I
Sbjct: 299 ATDVAARGLDVERISHVFNYDIPFDTEAYIHRIGRTGRAGRTGTAILFVTPQERRLLKSI 358

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+  ++ +  ++   S 
Sbjct: 359 ERATKRDIKPIDVPTSD 375


>gi|195021550|ref|XP_001985416.1| GH17046 [Drosophila grimshawi]
 gi|193898898|gb|EDV97764.1| GH17046 [Drosophila grimshawi]
          Length = 811

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 130/400 (32%), Positives = 213/400 (53%), Gaps = 3/400 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F   G   +++ +V  A Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ P+  
Sbjct: 293 SFGHFGFDDQLLKSVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPLLT 352

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + ++       P  LIL PTREL+ Q+ +  +K+GK YN+ V    GG     Q+K L
Sbjct: 353 HLMDQRELRPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSKAL 412

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G ++++ TPGR++D        +  +  LV+DEADRM  MGF P +++I + V   RQ
Sbjct: 413 EQGCEIVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQ 472

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    +++++ + L +P RI     +   + I            K   LL  L+
Sbjct: 473 TLLFSATFKKRIERLARDILTDPVRIVQGDLNEANQDITQHVYVFPNPLQKWNWLLCHLV 532

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        ++F  +K +   + ++L  +  +   +HG++DQ  R K++  FK     ++
Sbjct: 533 KFLSEG-GVLVFVTKKADAETVSNNLLLKEHNCLLLHGDMDQADRNKVIMQFKRKECDIL 591

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + +V N+D+    + + HRIGRTGRAG  G A+TLV  +D +    
Sbjct: 592 VATDVAARGLDIPHIRNVINYDIARDIDTHTHRIGRTGRAGEKGNAYTLVTDKDKEFAGH 651

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           + + +E     +  DL  L         ++    +   P+
Sbjct: 652 LVRNLEGADQAVPDDLMELAMKSSWFRSSRFKQGKGRKPL 691


>gi|166365637|ref|YP_001657910.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843]
 gi|166088010|dbj|BAG02718.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843]
          Length = 479

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 149/403 (36%), Positives = 235/403 (58%), Gaps = 13/403 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS   +  +   G+  PT IQ K IPL+L+ HD+ G++QTGTGKTA++ LP+L  
Sbjct: 5   FNNLGLSDSRLQHLETLGFTTPTEIQTKAIPLLLEGHDMVGMSQTGTGKTAAYSLPLLER 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     V+    LIL PTRELA QVA   + +  +  L +  + GG   E Q + LE+G
Sbjct: 65  MDTKNPNVQA---LILTPTRELAQQVASAIKDFSDDRRLFILTVCGGQSMERQIRSLEKG 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++D  +R KL + ++  +V+DEAD ML MGFI  ++ I    P TRQT  
Sbjct: 122 VQIVVGTPGRVIDLLDRKKLHLESLNWVVLDEADEMLSMGFIDDVKKILQASPSTRQTAC 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++ +  NFL++P  + V+ P +    IE         ++K      Q L   
Sbjct: 182 FSATMPREIRDLIANFLKSPISVTVSQPQAAPAKIEQKIYLIPRGWTKLKV--LQPLLEI 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           + +++ IIF   K+    L   L++ G +V   HGN+ Q  R +++  F+EG I+L+VA+
Sbjct: 240 EPLESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+ ++ HV N+D+P+ AE YIHRIGRTGRAG+ G A +LV   D + +  IE+
Sbjct: 300 DIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQIEQ 359

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            + ++++         +P   + ++     A+  N + +  +G
Sbjct: 360 RLRQRLES--------SPIPSRTEVEAKRLAKLQNQLKEALSG 394


>gi|148982431|ref|ZP_01816753.1| ATP-dependent RNA helicase SrmB [Vibrionales bacterium SWAT-3]
 gi|145960483|gb|EDK25855.1| ATP-dependent RNA helicase SrmB [Vibrionales bacterium SWAT-3]
          Length = 421

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 125/371 (33%), Positives = 200/371 (53%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L L+ +++ A+ + GY +PT IQ + IP  L   DV   A TGTGKTASFVLP L 
Sbjct: 4   TFAELDLNQELLKAIDEMGYERPTQIQAEAIPQALDGRDVLASAPTGTGKTASFVLPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    +   P  + IL PTRELA Q+ D   +  K   L +  + GG+ ++     L 
Sbjct: 64  YLQDFPRKKAGPARMLILTPTRELAMQITDQARELAKYTALNIFTITGGVMYQEHADILG 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR++++    +     IE L++DEADRMLDMGF P +  +++   + +QT
Sbjct: 124 TTQDIVVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPVVDRLSAECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     ++  +E+ L NP  I+  +     + I   +        K         
Sbjct: 184 LLFSATLEGKGVEGFTEDLLNNPAEIDAKSSLRERKKITQWYHRADTAEHKLD---LLKH 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  I+F   ++ + +L   LE        I G + Q  R   ++ F++GT+ ++
Sbjct: 241 IITKEAERSIVFLKTRERLGDLRALLESAQIPCAWIQGEMPQDRRNNAIARFRDGTVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A +L+   D   I+ 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQLMIER 360

Query: 360 IEKLIEKKVDW 370
           + +  ++ +  
Sbjct: 361 VARYTKEAIKE 371


>gi|257456960|ref|ZP_05622141.1| ATP-dependent RNA helicase DbpA [Treponema vincentii ATCC 35580]
 gi|257445669|gb|EEV20731.1| ATP-dependent RNA helicase DbpA [Treponema vincentii ATCC 35580]
          Length = 605

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 139/449 (30%), Positives = 238/449 (53%), Gaps = 11/449 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F++  L   ++  + +AGY++ TP+Q +     +   D+   +QTGTGKTA++++ ++
Sbjct: 12  MNFSNFNLDSHLLQGLEEAGYIECTPVQEQVFSAGMDGSDLYVQSQTGTGKTAAYLVTLM 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +       R P   IL PTRELA QV +   K GK   L  A   GG+ ++ Q + L+
Sbjct: 72  QRMLAQGTESRRPAL-ILVPTRELAVQVEEEAHKLGKYTGLRAASFYGGVGYQQQEEALK 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--VPFTR 178
            G D++I TPGR++D      + + ++  LVIDEADRM DMGF P ++++ S+      R
Sbjct: 131 NGVDLIIGTPGRVIDLEKSKTMKLKHVGFLVIDEADRMFDMGFYPDLRSLLSVLSKAEER 190

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT+   ++ ++  +  + K I ++  + T + I       +   + +   L   
Sbjct: 191 QTMLFSATLNTWVKNLAWEYTIDAKEITIDADNVTVDEINQ---KLFHVAADQKMSLLLG 247

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   +  +N IIFCN KK    +   L   G++   + G++ Q  R+ I+ +FK G +  
Sbjct: 248 ILRNEKPENTIIFCNTKKTTEIVAKRLRINGYATEFLIGDLPQPKRLHIIDSFKAGKLTC 307

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI D+  V N+D+PN AENY+HRIGRT RAG+ G A++L +++D+ ++ 
Sbjct: 308 LVATDVAARGIDINDLAMVINYDLPNEAENYVHRIGRTARAGKTGAAYSLCSEQDVYNLP 367

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK IE K+  +              D +   + R +     +  G    +K    +KS
Sbjct: 368 DIEKYIEAKIPVVIPGEEDFEK-----DRSADQYIRLDRDSADEERGGRFGRKPRPGEKS 422

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRG 447
               K++ + +K  +            +G
Sbjct: 423 RREDKDARRGTKTARPASRTADSKRKKKG 451


>gi|116253340|ref|YP_769178.1| DEAD box ATP-dependent RNA helicase protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115257988|emb|CAK09086.1| putative DEAD box ATP-dependent RNA helicase protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 576

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 145/375 (38%), Positives = 226/375 (60%), Gaps = 4/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LG+S  +V  +   G   PTPIQ  +IPL+L+  D+ G+AQTGTGKTA+F LP++ 
Sbjct: 18  NFESLGVSKPIVATLFQLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 77

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L     R      RTLIL PTREL  Q+A++ +K+ +  +L + +++GG+    Q  +L
Sbjct: 78  KLLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQLQL 137

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G D+L+ TPGR+LD  NR  + +  +  LV+DEAD+MLD+GF+  ++ I  +VP  RQ
Sbjct: 138 EKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKRQ 197

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   +  ++  +L +P ++EV  P   A+ +E        +  K    L +  
Sbjct: 198 TMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVGGKNDKTE--LLRKS 255

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++     ++F   K     L   LE  G+SV +IHGN  Q  R + L  F++G+I+ +
Sbjct: 256 LTENPDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKTL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DIP V HV+N+D+P   + Y+HRIGRT RAGR G A    A ++ K +  
Sbjct: 316 IATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRD 375

Query: 360 IEKLIEKKVDWLNGD 374
           IE+L+   +   +G+
Sbjct: 376 IERLMGIDITVASGE 390


>gi|160880140|ref|YP_001559108.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160428806|gb|ABX42369.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
           ISDg]
          Length = 514

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 164/434 (37%), Positives = 247/434 (56%), Gaps = 15/434 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F ++ L   ++ A+ + G+++P+PIQ KTIPLVL+  D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MNFNEMNLIKPLLQAIKEEGFIEPSPIQKKTIPLVLEGRDILGCAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L KG       R LI+ PTRELA Q+ ++FE +GK  +L  +++ GG+    Q   L+
Sbjct: 61  QSLSKG--EGSGVRALIITPTRELAIQIYESFECFGKYTSLKQSVIYGGVGQSLQVNSLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+LI TPGR+ D   +G + ++ IE+ V+DEAD+MLDMGF+  I+ +  L+P TRQT
Sbjct: 119 AGIDILIATPGRLNDLIGQGYITLDAIEMFVLDEADQMLDMGFLNDIKKVIKLLPKTRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++ ++ N L NP+ I+++  +ST ++IE                      
Sbjct: 179 LLFSATMPKEIESLATNLLNNPEIIKISPVTSTVDSIEQSVYFVDRLNKISLLTSL---I 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  M   ++F   K     +   L K      AIHG   Q +R   LS+FKEG I+++V
Sbjct: 236 KEHKMSRVLVFTKTKHGADRVADKLNKAKVKTQAIHGGKGQNARQTALSDFKEGKIKVLV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++ +V N+D+PN+AE YIHRIGRTGRAG  G A  L   +D+ ++  I
Sbjct: 296 ATDIAARGIDISELSYVVNYDIPNQAEIYIHRIGRTGRAGLGGNAINLCNIDDMDYLREI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EK I   +  +      L        I +          P+ +T    ++   + +K  I
Sbjct: 356 EKHIGMVIPEVPSKWPML--------ILEKTEKPVRGQRPENTTKNVGKESVKTEEK--I 405

Query: 421 PLKESEKISKLQQD 434
            L E  K +K  + 
Sbjct: 406 LLNEGAKKTKAHKK 419


>gi|91200410|emb|CAJ73457.1| strongly similar to ATP-dependent RNA helicase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 524

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 143/392 (36%), Positives = 225/392 (57%), Gaps = 11/392 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
            F  LGLS   +  + + GY +PTPIQ KTIP +L    D+ G AQTGTGKTA+F LP+L
Sbjct: 3   SFESLGLSESTLKVLKEKGYEEPTPIQQKTIPAILSGTKDIVGQAQTGTGKTAAFGLPVL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L +   + +  + L+L PTRELA QVA+          L++  + G    E Q + L+
Sbjct: 63  ELLPE---KSKNVQALVLTPTRELAIQVAEELNSLKGKKRLSIVPIYGRQSMELQLRSLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TPGR+LDH  RG L +  I  LV+DEAD ML+MGFI  ++ I       ++T
Sbjct: 120 KGIDIVVGTPGRVLDHLKRGTLKIGKISFLVLDEADEMLNMGFIDDVREIMENTGHEKRT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+ ++++N++++    +VN    T    +  +   +A    +       ++
Sbjct: 180 LLFSATMPFEIMQIAKNYMRDFDVQKVNAGQLTVSQTDQIYFEVFAADKFEALCRIIDIE 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  G++FC  K +V  +   L ++G+   A+HG+I Q  R KIL+ FK+  I +++
Sbjct: 240 KDFY---GLVFCRTKIDVDAVASHLIERGYDADALHGDISQSLREKILAKFKKRQINILI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++ HV N+ +P   E+Y+HRIGRTGRAG+ G A T +  E+ + +  I
Sbjct: 297 ATDVAARGLDIHNLSHVINYSLPQDPESYVHRIGRTGRAGKGGIAITFITPEEYRKLQFI 356

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQH 390
           +K  +  +  + L      +    +K+ I  H
Sbjct: 357 QKAAKTDIRKEKLPKIEDIIR--TKKLKIKDH 386


>gi|312373386|gb|EFR21141.1| hypothetical protein AND_17503 [Anopheles darlingi]
          Length = 615

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 134/412 (32%), Positives = 217/412 (52%), Gaps = 3/412 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G    ++ A+  + Y +PTPIQ + IP  L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 92  SFAHFGFDESLMKAIRKSEYSQPTPIQAQAIPAALGGRDIIGIAKTGSGKTAAFLWPMLV 151

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + ++       P  LIL PTREL+ Q+    +K+GK YN++V    GG     Q+K L
Sbjct: 152 HIMDQRELGPGDGPIGLILAPTRELSLQIYGEAKKFGKVYNISVCCCYGGGSKWEQSKAL 211

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+GA++++ TPGR++D        +  +  LV+DEAD+M +MGF P +++I + +   RQ
Sbjct: 212 EQGAEIVVATPGRMIDMVKMKATNLRRVTYLVLDEADKMFNMGFEPQVRSICNHIRPDRQ 271

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    ++K++ + L +P RI           +    V      +K    L   L
Sbjct: 272 TLLFSATFKKRVEKLARDVLTDPVRIIHGDLGEANADVAQRVVLLPNVQAKW-NWLLANL 330

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               +  + +IF  +K +   + +SL  +   V  +HG++DQ  R  +++ FK   + +M
Sbjct: 331 VQMLSEGSVLIFVTKKADAEQVANSLRVKENEVVLLHGDMDQSERNSVITRFKRREVDMM 390

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+D+    + + HRIGRTGRAG  G A+TL+  +D +    
Sbjct: 391 VATDVAARGLDIPHIRTVVNYDIARDIDTHTHRIGRTGRAGEKGTAYTLITDKDKEFSGH 450

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           + + +E     +  +L  L         ++     K   +     G   R++
Sbjct: 451 LVRNLEGANQEVPEELLKLAMQSSWFRNSRFKQTNKGKNLNVGGAGLGFRQR 502


>gi|300118846|ref|ZP_07056566.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           cereus SJ1]
 gi|298723814|gb|EFI64536.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           cereus SJ1]
          Length = 481

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 138/418 (33%), Positives = 233/418 (55%), Gaps = 15/418 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  LS +V  A+   GY  PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  +
Sbjct: 6   FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++++S  ++  P  IE+     T + IEH     +    ++   L + + + 
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEH---TLFEVREEEKLSLLKDVTTI 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV ++   L++  +    IHG + Q  R  ++ +F++G  + +VA+
Sbjct: 240 ENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE 
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEA 359

Query: 363 LIEKKV---------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            I   +         + + G  +       K  I +   A  N  I +      ++KK
Sbjct: 360 YIGFAIPKANAPSKEEVMKGKAAFEEKIQAKPTIKKDKSADINKGIMKLYFNGGKKKK 417


>gi|241205862|ref|YP_002976958.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859752|gb|ACS57419.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 580

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 144/375 (38%), Positives = 226/375 (60%), Gaps = 4/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LG+S  ++  +   G   PTPIQ  +IPL+L+  D+ G+AQTGTGKTA+F LP++ 
Sbjct: 24  NFESLGVSKPIIATLFQLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 83

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L     R      RTLIL PTREL  Q+A++ +K+ +  +L + +++GG+    Q  +L
Sbjct: 84  KLLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQLQL 143

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G D+L+ TPGR+LD  NR  + +  +  LV+DEAD+MLD+GF+  ++ I  +VP  RQ
Sbjct: 144 EKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKRQ 203

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   +  ++  +L +P ++EV  P   A+ +E        +  K    L +  
Sbjct: 204 TMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTE--LLRKS 261

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++     ++F   K     L   LE  G+SV +IHGN  Q  R + L  F++G+I+ +
Sbjct: 262 LTENPDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKTL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DIP V HV+N+D+P   + Y+HRIGRT RAGR G A    A ++ K +  
Sbjct: 322 IATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRD 381

Query: 360 IEKLIEKKVDWLNGD 374
           IE+L+   +   +G+
Sbjct: 382 IERLMGIDITVASGE 396


>gi|238761773|ref|ZP_04622747.1| DEAD/DEAH box helicase domain protein [Yersinia kristensenii ATCC
           33638]
 gi|238699887|gb|EEP92630.1| DEAD/DEAH box helicase domain protein [Yersinia kristensenii ATCC
           33638]
          Length = 658

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 139/378 (36%), Positives = 230/378 (60%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS  ++ A+ D GY KP+PIQ++ IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 8   SFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLH 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     ++ P+ L+L PTRELA QVA     + K+ +    + +  G  ++ Q + L 
Sbjct: 68  NIDPT---LKAPQVLVLAPTRELAIQVAQALTDFSKHMDGVNVVALYGGQRYDVQLRALR 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 125 QGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ + + +  +T   I   F      Y+KK AL++    
Sbjct: 185 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSFWRVGGGYNKKEALVR--FL 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 243 ESEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLDRLKDGRLDILI 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  +
Sbjct: 303 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNV 362

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 363 ERTMKLTIPEVQLPNAEL 380


>gi|224437667|ref|ZP_03658614.1| ATP-dependent RNA helicase DeaD [Helicobacter cinaedi CCUG 18818]
 gi|313144114|ref|ZP_07806307.1| ATP-dependent RNA helicase DeaD [Helicobacter cinaedi CCUG 18818]
 gi|313129145|gb|EFR46762.1| ATP-dependent RNA helicase DeaD [Helicobacter cinaedi CCUG 18818]
          Length = 513

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 135/367 (36%), Positives = 208/367 (56%), Gaps = 7/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL   V+  + +AG+  P+P+Q ++IP+VLQ  D+   AQTGTGKTA+F +P+L 
Sbjct: 19  SFETFGLKDFVLKGIKEAGFSSPSPVQAQSIPIVLQGKDLIAQAQTGTGKTAAFSIPIL- 77

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                 +R +    L++ PTRELA Q+++   K G+   +    + GG   + Q   LE+
Sbjct: 78  ---NALSRNKEIEALVITPTRELAMQISEEVLKLGRFGRIKTICMYGGQSIKRQCDLLEK 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH   G++     +++V+DE+D MLDMGF+  I+ I   +P T QTL
Sbjct: 135 KPKVMIATPGRLLDHLQNGRIENFAPKVVVLDESDEMLDMGFLDDIEEIFKFLPNTHQTL 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++ ++   L  P+ +++     T + IE  +         +  +       
Sbjct: 195 LFSATMPEPIKNLALKILDKPEFVKITPTDITNKDIEQQYYIINEGERDEAIVRLL---E 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIF   KK    L   L  +GF   A+HG+++Q  R   +  FKE  I+L+VA
Sbjct: 252 TQNPTKSIIFTRTKKEADALATRLVTKGFKAMALHGDMEQWDRRTAIKAFKENEIELLVA 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI DV HVFN+ +P   E+Y+HRIGRTGRAG+ G A TL    + K +  I+
Sbjct: 312 TDVASRGLDISDVSHVFNYHIPLNPESYVHRIGRTGRAGKKGVAITLATPLEYKDLSKIK 371

Query: 362 KLIEKKV 368
           ++ + K+
Sbjct: 372 QITKAKL 378


>gi|299829301|ref|NP_001015005.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Rattus norvegicus]
 gi|149049184|gb|EDM01638.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_a [Rattus
           norvegicus]
          Length = 455

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 152/463 (32%), Positives = 243/463 (52%), Gaps = 36/463 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++  +  A    G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 25  TFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K      ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++          SK        + 
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ---YYLFIPSKFKDTYLVYIL 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI KK+         +    E++  AQ                          + + +
Sbjct: 379 EHLIGKKLPVFPTQDEEVMMLTERVSEAQ--------------------------RFARM 412

Query: 421 PLKESEKISKLQQDIQENDAD---SLGFRGNMPAFMLPKNRGK 460
            L+E  +  K +++   +D D   ++G R  +    + K +G+
Sbjct: 413 ELREHGEKKKRKREDPGDDDDTEGAIGVRNKVAGGKMKKRKGR 455


>gi|293413224|ref|ZP_06655886.1| ATP-dependent RNA helicase RhlB [Escherichia coli B354]
 gi|291468172|gb|EFF10669.1| ATP-dependent RNA helicase RhlB [Escherichia coli B354]
          Length = 427

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 138/413 (33%), Positives = 207/413 (50%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 16  KFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 75

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 76  YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK 135

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 136 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 195

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 196 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 254

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 255 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 314

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 315 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 374

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 375 PAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGAPRNRRRSG 427


>gi|224285260|gb|ACN40356.1| unknown [Picea sitchensis]
          Length = 411

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 197/377 (52%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    Q  DV   AQ+GTGKTA+F   +L 
Sbjct: 39  TFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCQGLDVIQQAQSGTGKTATFCSGILQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     V   + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 99  QLDYN---VPECQALVLAPTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLRILQA 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 156 GVHVVVGTPGRVYDMLRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPSNLQVG 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+ NP RI V     T E I+  +V    +  K   L       
Sbjct: 216 VFSATMPPEALEITRKFMNNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDL--YE 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 274 TLAITQSVIFINTRRKVDMLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   + K+D + +  I+
Sbjct: 334 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFITKDDERMLQDIQ 393

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     V+ L  +++ L
Sbjct: 394 RFYNVVVEELPNNVADL 410


>gi|218701307|ref|YP_002408936.1| ATP-dependent RNA helicase RhlB [Escherichia coli IAI39]
 gi|300940005|ref|ZP_07154630.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
 gi|226739532|sp|B7NTG2|RHLB_ECO7I RecName: Full=ATP-dependent RNA helicase rhlB
 gi|218371293|emb|CAR19126.1| ATP-dependent RNA helicase [Escherichia coli IAI39]
 gi|300455138|gb|EFK18631.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
          Length = 421

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 138/413 (33%), Positives = 207/413 (50%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGTPRNRRRSG 421


>gi|218550995|ref|YP_002384786.1| ATP-dependent RNA helicase RhlB [Escherichia fergusonii ATCC 35469]
 gi|331675250|ref|ZP_08376001.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA280]
 gi|331685499|ref|ZP_08386083.1| ATP-dependent RNA helicase RhlB [Escherichia coli H299]
 gi|226739539|sp|B7LU75|RHLB_ESCF3 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|218358536|emb|CAQ91184.1| ATP-dependent RNA helicase [Escherichia fergusonii ATCC 35469]
 gi|323964028|gb|EGB59518.1| DEAD/DEAH box helicase [Escherichia coli M863]
 gi|323974364|gb|EGB69492.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
 gi|324111007|gb|EGC04994.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
 gi|325499248|gb|EGC97107.1| ATP-dependent RNA helicase RhlB [Escherichia fergusonii ECD227]
 gi|327250632|gb|EGE62338.1| ATP-dependent RNA helicase rhlB [Escherichia coli STEC_7v]
 gi|331067536|gb|EGI38940.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA280]
 gi|331077200|gb|EGI48414.1| ATP-dependent RNA helicase RhlB [Escherichia coli H299]
          Length = 421

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 138/413 (33%), Positives = 207/413 (50%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGAPRNRRRSG 421


>gi|156502690|ref|YP_001428756.1| DEAD/DEAH box helicase family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|290953085|ref|ZP_06557706.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313716|ref|ZP_06804297.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           holarctica URFT1]
 gi|156253293|gb|ABU61799.1| DEAD/DEAH box helicase family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 441

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 152/403 (37%), Positives = 238/403 (59%), Gaps = 8/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+  +  A+   GY KPTPIQ + IP+VL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MKFSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSNNPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  +  +++   V+DEADRMLDMGFI  ++ I +L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++  FL NP+ +  +  ++T + I                +     
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   ++F   K     +   L   G S  AIHGN  Q +R K L++FK   I ++
Sbjct: 238 IKDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+ N AE+Y+HRIGRTGRAG+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           IE LI   +  + L G  ++ N P+  +  +  N A+K + + 
Sbjct: 358 IEHLIGHLLPREELEGFEATHNVPITSM--SHKNKAKKIDEVK 398


>gi|312129451|ref|YP_003996791.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311905997|gb|ADQ16438.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 619

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 147/469 (31%), Positives = 249/469 (53%), Gaps = 17/469 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++L +S  +V AV + G+ + TPIQ   IP+V+   DV G AQTGTGKTA+F +P +
Sbjct: 68  LKFSELPISDYIVKAVEEMGFTESTPIQTAAIPVVMSGRDVIGQAQTGTGKTAAFGIPAI 127

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             +    A  R  + LIL PTRELA QV +      K     +   I  G  +E Q   L
Sbjct: 128 EHV---NAEDRNTQVLILCPTRELALQVKEQLTLLAKYKKGLLVSAIYGGESYERQFANL 184

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGRI+DH  +  L ++NI ++++DEAD ML+MGF   I+ I S     RQ
Sbjct: 185 KRGTQIVVGTPGRIMDHIEKKTLKLDNISMVILDEADEMLNMGFREDIEQILSFAKEDRQ 244

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM+ E+  +++ F  +P+ ++V     T   IE  +     +   +  +     
Sbjct: 245 TVLFSATMSKEILNITKKFQNDPEIVKVTRKEITNTNIEQSYYLVKKEAKFELMVRL--- 301

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                ++  ++FCN K  V  +   L+  G++   +HG++ Q +R ++++ F+ G  +++
Sbjct: 302 IDVHDLQLMLVFCNTKSKVDEIVEELQANGYAAEGLHGDMRQAARNQVMNKFRNGNTKIL 361

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V  V N+D+P   E Y+HRIGRTGRAG+ GKAF  + K D   +  
Sbjct: 362 VATDVAARGIDVSGVDAVINYDLPMDLEYYVHRIGRTGRAGKLGKAFLFITKRDRSRMRD 421

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR-----RKKNYS 414
           +E+  +  +    G + + +  LEK  I +     + N +   +  F++     +++ + 
Sbjct: 422 LEQYTKVAIP--QGKIPT-SADLEKSRINKFVEKIRENIVEDTNPAFEKIVDQLKEEGFY 478

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
           + +    L + +  +  +   ++ D      RG    F   K RG   +
Sbjct: 479 THQIISALMQMQMGAVRKSSFRDEDIADEA-RGRNERF-ASKERGNRRE 525


>gi|255746112|ref|ZP_05420059.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|255735866|gb|EET91264.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
          Length = 448

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 124/394 (31%), Positives = 189/394 (47%), Gaps = 6/394 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR LIL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 61  HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG   ++ TPGR+ DH +   L +  +E LV+DEADRMLD+GF   ++ I +     R+
Sbjct: 121 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D             +   +     + E  +         +      L   +
Sbjct: 181 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  IIF   + +   L   L +      A+ GN++Q  R  I+  F+    +++
Sbjct: 241 LADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDIP V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D +    
Sbjct: 301 VTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKR 360

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKIDIA 388
           +E  +++++ +     L G    L P   K   A
Sbjct: 361 VEAFLQQEIQFEVLAGLEGKFKGLKPRQAKPKAA 394


>gi|224009464|ref|XP_002293690.1| eukaryotic translation initiation factor 4A [Thalassiosira
           pseudonana CCMP1335]
 gi|220970362|gb|EED88699.1| eukaryotic translation initiation factor 4A [Thalassiosira
           pseudonana CCMP1335]
          Length = 369

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 125/373 (33%), Positives = 208/373 (55%), Gaps = 5/373 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           + +  +++  +   G+ KP+ IQ + I   +   D+   AQ+GTGKTA+F +  L  L+ 
Sbjct: 1   MEIPEELLRGIYAYGFEKPSAIQQRAIKPTMLGRDLIAQAQSGTGKTATFAIGTLAKLDP 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
              ++R  ++LIL PTRELA Q+       G    L V   +GG       + L+ G  V
Sbjct: 61  ---KLRECQSLILAPTRELAQQIQKVVIALGDYMELQVHACVGGTAVRDDIRTLQGGVHV 117

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           ++ TPGR+ D  NR  L +++I    +DEAD ML  GF   I +I   +P + Q  LFSA
Sbjct: 118 VVGTPGRVYDMINRRALRLDSIRQFFLDEADEMLSRGFKDQIYDIFKFLPESVQVCLFSA 177

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           TM  ++ +V++ F+++P RI V     T E I+  ++A   +  K   L         T+
Sbjct: 178 TMPLDVLEVTQRFMRDPVRILVKKDELTLEGIKQFYIAVEREEWKLDTLCDL--YETLTI 235

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              II+CN ++ V  L   ++++ F+V  +HG++DQR R  I+  F+ G+ ++++ +DL 
Sbjct: 236 TQAIIYCNTRRKVDWLQEQMQERDFTVSCMHGDMDQRERDIIMREFRSGSSRVLITTDLL 295

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARG+D+  V  V NFD+P   ENYIHRIGR+GR GR G A   + + D++++  IE+  +
Sbjct: 296 ARGIDVQQVSLVINFDLPTNRENYIHRIGRSGRFGRKGVAINFLTEGDVRYLRDIEQFYQ 355

Query: 366 KKVDWLNGDLSSL 378
            ++  +  +++ L
Sbjct: 356 TEITEMPMNVADL 368


>gi|288799847|ref|ZP_06405306.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288333095|gb|EFC71574.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 445

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 141/438 (32%), Positives = 233/438 (53%), Gaps = 17/438 (3%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
             + + TPIQ   IP +L + D+ G+AQTGTGKTA+++LP+L++L+ G         +I+
Sbjct: 1   MRFDECTPIQEACIPAILNKKDILGVAQTGTGKTAAYLLPVLSLLDNGGYPKDKINCIIM 60

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIP----FEAQNKKLERGADVLICTPGRIL 134
            PTRELA Q+    + +        ++ + G      ++ + K L+ GADV+I TPGR +
Sbjct: 61  SPTRELAQQIDQAMQGFSYYLQEVSSVAVYGGNDGNRYDQEIKSLKLGADVIIATPGRFI 120

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
            H + G +  + +   ++DEADRMLDMGF   I  I   +P   Q ++FSATM  +++ +
Sbjct: 121 SHLSLGNIDTSGVSFFILDEADRMLDMGFYDDIMTIAKELPPHCQNIMFSATMPPKIETL 180

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           +   L+NP+ I++       +  +  +V    Q  K    L     + D ++  IIF  +
Sbjct: 181 ARTILKNPETIKLAVSKPAEKIKQSAYVCYEPQKLKIVTSL----FNADNLQRVIIFSGK 236

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K  V ++  +L  +  +  A+H ++ Q  R +++  FK G I ++VA+D+ +RG+DI D+
Sbjct: 237 KDKVKDINKALLSKKINSGAMHSDLSQAERDEVMFKFKAGQIDVLVATDIVSRGIDIDDI 296

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL-NG 373
             V N+DVP+  E+YIHRIGRT RA R GKA TLV+ ED+ +   IE+ +EK +D   N 
Sbjct: 297 RMVINYDVPHDVEDYIHRIGRTARADRDGKAITLVSDEDMFYFQQIEQFLEKTIDKTPNP 356

Query: 374 DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR-RKKNYSSQKSHIPLKESEKISKLQ 432
           D     P  +K+       ARK     + S+G    ++++Y   K+    K +      +
Sbjct: 357 DNIGEGPEYKKVQ----KFARKKGVKSRNSSGKASFKQRHYKETKNQQHDKNATNTHHSK 412

Query: 433 QDIQENDADSLGFRGNMP 450
           +   EN         + P
Sbjct: 413 KKSNENKRP---KGSHKP 427


>gi|257466549|ref|ZP_05630860.1| ATP-dependent RNA helicase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917704|ref|ZP_07913944.1| ATP-dependent RNA helicase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691579|gb|EFS28414.1| ATP-dependent RNA helicase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 528

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 127/368 (34%), Positives = 207/368 (56%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F +LG+  K++ A+   GY  PTPIQ  TIP +L    D+ G AQTGTGKTA+F LP+L
Sbjct: 9   EFRELGIGEKLLKALSKKGYETPTPIQSLTIPALLTGEKDIIGQAQTGTGKTAAFALPIL 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +E         + ++L PTRELA QVA+     G +  + +  + GG   + Q K L 
Sbjct: 69  ENIEHQDK----IQGIVLTPTRELALQVAEEMNSLGSSKKIKIIPVYGGQSIDIQRKLLR 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+++ TPGR++D   R  L + +++  ++DEAD ML+MGF+  ++ I       ++ 
Sbjct: 125 NGADIIVGTPGRVIDFIERKFLRLQDLKYFILDEADEMLNMGFLEEVEKILEATNEDKRM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM +E+ KV++  +++ + + V     T +         +    +        + 
Sbjct: 185 LFFSATMPNEILKVAKKHMKDYEILAVKARELTTDLT---DQIYFEVNERDKFEALCRII 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  GI+FC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I ++V
Sbjct: 242 DLAEDFYGIVFCRTKTDVNEVVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKAKKINILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV N+ +P  AE+Y+HRIGRTGRAG+ G A T +  ++ + +  I
Sbjct: 302 ATDVAARGIDVNDLSHVINYAIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 361

Query: 361 EKLIEKKV 368
           +K+++ ++
Sbjct: 362 QKIVKTEI 369


>gi|163803377|ref|ZP_02197253.1| ATP-dependent RNA helicase SrmB [Vibrio sp. AND4]
 gi|159172839|gb|EDP57681.1| ATP-dependent RNA helicase SrmB [Vibrio sp. AND4]
          Length = 407

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 125/371 (33%), Positives = 198/371 (53%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L L   ++ A+   GY +PT +Q + IP  L   D+   A TGTGKTA+FVLP L 
Sbjct: 4   TFAELDLDQNLLEAIEQMGYERPTNVQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    R   P  + IL PTRELA QVAD      KN  L +  + GG+ ++     L 
Sbjct: 64  YLQDFPRRKPGPARILILTPTRELAMQVADQARAMAKNTKLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+ ++ +  +     IE L++DEADRMLDMGF P +  +++   + +QT
Sbjct: 124 TTQDIVVATPGRLREYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     ++  + + L  P +I+  +P    + I   +        K         
Sbjct: 184 LLFSATLEGKGVEGFTADLLNEPAKIDAKSPLRERKKIAQWYHRADDAEHKLA---LLKH 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F   ++ +  L   LE        I G + Q  R   +S F+EG + ++
Sbjct: 241 IITEQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFREGAVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A ++V   D   ++ 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMLER 360

Query: 360 IEKLIEKKVDW 370
           + + +++ +  
Sbjct: 361 VARYVKEDIKE 371


>gi|149713746|ref|XP_001501494.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1
           [Equus caballus]
          Length = 455

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 155/463 (33%), Positives = 245/463 (52%), Gaps = 36/463 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++  +  A    G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 25  TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K      ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++          SK        + 
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ---YYLFIPSKFKDTYLVYIL 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI KK+         +    E++  AQ                          + + +
Sbjct: 379 EHLIGKKLPVFPTQDDEVMMLTERVTEAQ--------------------------RFARM 412

Query: 421 PLKES-EKISKLQQDIQENDAD--SLGFRGNMPAFMLPKNRGK 460
            L+E  EK  + ++D+ +ND    +LG R  +    + K +G+
Sbjct: 413 ELREHGEKKKRTREDVGDNDDTEGALGVRNKVAGGKMKKRKGR 455


>gi|110807530|ref|YP_691050.1| ATP-dependent RNA helicase RhlB [Shigella flexneri 5 str. 8401]
 gi|122957085|sp|Q0SYX0|RHLB_SHIF8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|110617078|gb|ABF05745.1| putative ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401]
          Length = 421

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 140/413 (33%), Positives = 208/413 (50%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKV--DWLNGD--LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     N D  ++ L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIENYIGHSILVSKYNPDALMTDLPKPLRLTRARTGNGPRRTGAPRNRRRSG 421


>gi|325684686|gb|EGD26840.1| cold-shock DEAD box protein A [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 478

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 144/388 (37%), Positives = 225/388 (57%), Gaps = 14/388 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+  ++ A+  +G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F LP+L
Sbjct: 1   MKFTELGLNDNILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  +   +  + +++EPTRELA Q  +   + G++ N  V ++ GG     Q + L+
Sbjct: 61  QKLDLDKQE-QAIQAIVIEPTRELAIQTQEELFRLGRDENAKVQVVYGGADIGRQIRALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  ++L+ TPGR+LDH  R  + ++ ++ +V+DEAD MLDMGFI  I++I +      QT
Sbjct: 120 KVPEILVGTPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   +Q + E F+ +P+ +++     TA+ I+  FV                  
Sbjct: 180 LLFSATMPKPIQVLGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRL---I 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     ++F   K+ V  L   L  +G++   IHG++ Q  RM++L  FKEG + ++V
Sbjct: 237 DVENPDLAVVFGRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   ++Y+HRIG   RAG+ G + T V   +I ++  I
Sbjct: 297 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIG---RAGKSGMSVTFVTPNEIGYMRTI 353

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           E L +KK       +S L PP +    A
Sbjct: 354 EDLTKKK-------MSPLRPPTDAQAFA 374


>gi|224023569|ref|ZP_03641935.1| hypothetical protein BACCOPRO_00272 [Bacteroides coprophilus DSM
           18228]
 gi|224016791|gb|EEF74803.1| hypothetical protein BACCOPRO_00272 [Bacteroides coprophilus DSM
           18228]
          Length = 637

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 147/464 (31%), Positives = 249/464 (53%), Gaps = 30/464 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+SP++  A+ + GY  P P+Q + IP +L   +DV  +AQTGTGKTA+F LP++
Sbjct: 3   TFEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             ++  R   R+P+ LIL PTREL  Q+A +   Y K   +L +  + GG   E+Q K L
Sbjct: 63  QKIDVSR---RVPQALILCPTRELCLQIAGDLTDYSKYITDLKILPVYGGSSIESQIKSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  +++ TPGR++D   R    ++ +  +V+DEAD ML+MGF   I  I   VP  R 
Sbjct: 120 KAGVHIIVATPGRLIDLMERKVARLDTVADVVMDEADEMLNMGFTDSINAILEKVPEERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSATM+ E+ ++++ +L + K I + T +   E  ++     Y  ++K   L  + +
Sbjct: 180 TLMFSATMSPEIARIAKTYLHDAKEITIGTKN---EGSKNVHHIAYTVHAKDKYLALKRV 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L + G++  ++HG + Q  R  ++  F++  +QL+
Sbjct: 237 VDFYPQIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQCHLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVNDLTHVINYGLPDDTESYTHRSGRTGRAGKTGVSIAIINLREKGKMRE 356

Query: 360 IEKLIEKKVD----------------WLNGDLSSLNPPLEKIDIAQHNHAR------KNN 397
           IE++I+KK D                 L  D+  +    E+I+       R      K +
Sbjct: 357 IERIIKKKFDLGTLPTGKEICEQQLIKLIDDIEKVKVDEEEIETFLPGIYRKLEWLSKED 416

Query: 398 PIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDAD 441
            I +  +    R  +Y    + I   +  +  + Q++ +++ +D
Sbjct: 417 LIKRVVSMEFNRFLDYYKNAAEIEQPKGNEKRESQKERKDHGSD 460


>gi|328945532|gb|EGG39683.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1087]
          Length = 523

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 148/373 (39%), Positives = 226/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ KTIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSTELLAEIEKAGFVEASPIQEKTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQA---LIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++                  
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|325198557|gb|ADY94013.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           G2136]
          Length = 457

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 158/447 (35%), Positives = 251/447 (56%), Gaps = 29/447 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +      +
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNL---LE 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 242 RLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           ++I++L   K+             +E+I+  +     +    P+K    + R++N     
Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRY--- 406

Query: 418 SHIPLKESEKISKLQQDIQENDADSLG 444
                 ES K  + +    E  A+  G
Sbjct: 407 ------ESAKAQREKNTRPETTANDAG 427


>gi|294625538|ref|ZP_06704165.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294663958|ref|ZP_06729380.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292600152|gb|EFF44262.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292606274|gb|EFF49503.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 460

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 163/448 (36%), Positives = 241/448 (53%), Gaps = 14/448 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PTPIQ + IPLVL  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      V  PR     IL PTRELA QV D+   Y K   +  A++ GG+    Q  
Sbjct: 61  QHLGTAPQTVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+LI  PGR++DH  R  + ++ IE+L++DEADRMLDMGF+P I+ I + +P  
Sbjct: 121 ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180

Query: 178 RQTL-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +   LFSAT  + +++++  F++NP +I+V   ++ AE+I H          +   L  
Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               S+   +  ++F   K     L   LEK G    AIHGN  Q  RM+ LS+FK G +
Sbjct: 241 LAQDSR---EQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LVA+++ K 
Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  I +++ + V+    D+    P    I        R   P   ++     RK +    
Sbjct: 358 LRQIVRMLGRDVEI--RDVPGYEPQT-PIRWGNSAPGRAEQPGGDRAP----RKSHARRP 410

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
               P +        +   Q ++     
Sbjct: 411 HGDAPRQAHAHAGPKKPGGQRSNGPRQA 438


>gi|224121758|ref|XP_002318665.1| predicted protein [Populus trichocarpa]
 gi|222859338|gb|EEE96885.1| predicted protein [Populus trichocarpa]
          Length = 541

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 130/378 (34%), Positives = 202/378 (53%), Gaps = 3/378 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +       +  +   G+V+PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP    
Sbjct: 122 FHEANFPDYCLQVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYMLPAFVH 181

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       +   P  L+L PTRELA Q+ +   K+G   N+    + GG P   Q + L+
Sbjct: 182 VAAQPRLVQGDGPIVLVLAPTRELAVQIQEEGLKFGSPANIRSTCIYGGAPKGPQIRDLQ 241

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   RQT
Sbjct: 242 RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQT 301

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L +SAT   E++ ++  FL N  ++ + +    A    +  V       K    L +LL+
Sbjct: 302 LYWSATWPREVEILARQFLHNAYKVIIGSADLKANQSINQVVEVIMDMEKY-NRLIKLLK 360

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF   KK    +   L   G+   +IHG+ +Q  R  +L+ FK G   +M 
Sbjct: 361 EVMDGSRILIFMETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSAIMT 420

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+  V N+D P+  E+Y+HRIGRTGRAG  G AFT     + K    +
Sbjct: 421 ATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGARGTAFTFFTDSNAKFARGL 480

Query: 361 EKLIEKKVDWLNGDLSSL 378
            +++++    +   LS+L
Sbjct: 481 IRILQESGQIVPPALSAL 498


>gi|156380897|ref|XP_001632003.1| predicted protein [Nematostella vectensis]
 gi|156219053|gb|EDO39940.1| predicted protein [Nematostella vectensis]
          Length = 432

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 115/376 (30%), Positives = 186/376 (49%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGKTA++++P+L 
Sbjct: 48  EFEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLE 107

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             +         + L+L PTRELA Q +    + GK+    V +  GG   +    +L  
Sbjct: 108 RTDTT---KNCIQALVLVPTRELALQTSQICIELGKHMGAQVMVTTGGTSLKDDILRLYN 164

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+LD   +    M+  ++LV+DEAD++L M F   ++ I   +P  RQ L
Sbjct: 165 KVHVIVATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSMDFKKMLEQIIKHLPENRQIL 224

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F +   R           T+            K+       L  
Sbjct: 225 LFSATFPISVRD----FKEKHLRKPYEINLMDELTLHGVTQYYAFVEEKQKVHCLNTLFQ 280

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + GFS   IH  + Q  R ++  +F++G  + +V 
Sbjct: 281 KLQINQSIIFCNSVQRVELLARKILELGFSCFYIHARMSQSHRNRVFHDFRQGHCRNLVC 340

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  L+  +D   +  IE
Sbjct: 341 SDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFGHLGVAINLITYDDRFDLYKIE 400

Query: 362 KLIEKKVDWLNGDLSS 377
             ++ ++  +   +  
Sbjct: 401 NELDTEIKPIPSVIDK 416


>gi|15598036|ref|NP_251530.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|116050844|ref|YP_790333.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218890962|ref|YP_002439828.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
 gi|254235828|ref|ZP_04929151.1| hypothetical protein PACG_01770 [Pseudomonas aeruginosa C3719]
 gi|254241507|ref|ZP_04934829.1| hypothetical protein PA2G_02205 [Pseudomonas aeruginosa 2192]
 gi|9948926|gb|AAG06228.1|AE004710_10 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|115586065|gb|ABJ12080.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126167759|gb|EAZ53270.1| hypothetical protein PACG_01770 [Pseudomonas aeruginosa C3719]
 gi|126194885|gb|EAZ58948.1| hypothetical protein PA2G_02205 [Pseudomonas aeruginosa 2192]
 gi|218771187|emb|CAW26952.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
          Length = 567

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 140/370 (37%), Positives = 227/370 (61%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+ P V+ A++  GY +P+PIQ ++IPL+L+ HD+ G AQTGTGKTA+F LP+L+ 
Sbjct: 19  FAALGIHPNVLAAIVAVGYEEPSPIQAQSIPLILEGHDMIGQAQTGTGKTAAFALPLLSR 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++  R     P+ L+L PTRELA QVA   E Y K    + V  + GG P   Q K L +
Sbjct: 79  IDPSRRE---PQMLVLVPTRELALQVATACETYSKQLPGVGVVAVYGGAPMGPQLKALRQ 135

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGR+ DH  R + L+  ++ LV+DEAD ML +GF+  ++ I   +P +RQT+
Sbjct: 136 GAQILVATPGRLCDHLRRDEKLLATVQRLVLDEADEMLKLGFMDDLEVIFEALPESRQTV 195

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++    ++ K+ +    ++  +T+          ++ + A   Q L  
Sbjct: 196 LFSATLPASIRGIA---ERHLKQPKHVKIAAKTQTVARIEQVHLMVHADQKAGSIQRLLE 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I F   K+  ++    LE+QG+   A++G++ Q  R +++ + K+G++ +++A
Sbjct: 253 VEQFDALIAFVRTKQATLDYAELLERQGYRAAALNGDMPQAQRERVIESLKDGSLDIVIA 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HV N D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 313 TDVAARGLDVPRITHVLNIDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 372

Query: 362 KLIEKKVDWL 371
           ++  +KV  +
Sbjct: 373 RVTGQKVGEV 382


>gi|107102390|ref|ZP_01366308.1| hypothetical protein PaerPA_01003452 [Pseudomonas aeruginosa PACS2]
 gi|296388673|ref|ZP_06878148.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 556

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 140/370 (37%), Positives = 227/370 (61%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+ P V+ A++  GY +P+PIQ ++IPL+L+ HD+ G AQTGTGKTA+F LP+L+ 
Sbjct: 8   FAALGIHPNVLAAIVAVGYEEPSPIQAQSIPLILEGHDMIGQAQTGTGKTAAFALPLLSR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++  R     P+ L+L PTRELA QVA   E Y K    + V  + GG P   Q K L +
Sbjct: 68  IDPSRRE---PQMLVLVPTRELALQVATACETYSKQLPGVGVVAVYGGAPMGPQLKALRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGR+ DH  R + L+  ++ LV+DEAD ML +GF+  ++ I   +P +RQT+
Sbjct: 125 GAQILVATPGRLCDHLRRDEKLLATVQRLVLDEADEMLKLGFMDDLEVIFEALPESRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++    ++ K+ +    ++  +T+          ++ + A   Q L  
Sbjct: 185 LFSATLPASIRGIA---ERHLKQPKHVKIAAKTQTVARIEQVHLMVHADQKAGSIQRLLE 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I F   K+  ++    LE+QG+   A++G++ Q  R +++ + K+G++ +++A
Sbjct: 242 VEQFDALIAFVRTKQATLDYAELLERQGYRAAALNGDMPQAQRERVIESLKDGSLDIVIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HV N D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVLNIDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKVDWL 371
           ++  +KV  +
Sbjct: 362 RVTGQKVGEV 371


>gi|327404226|ref|YP_004345064.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327319734|gb|AEA44226.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 379

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 133/381 (34%), Positives = 208/381 (54%), Gaps = 5/381 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F+  GLSP ++ A+ +  Y KPTPIQ   IP +L   DV GIA TG+GKTAS+VLP +
Sbjct: 1   MSFSSFGLSPFLLQALTEMTYEKPTPIQELAIPAILTGKDVLGIAPTGSGKTASYVLPVL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF-EAQNKK 118
             + +  +A+ R  ++LIL PTRELA QV + F+ +       + +             K
Sbjct: 61  AQLSKVEKAKNRHIQSLILVPTRELAIQVEEVFKSFAHKLPEPLKVKAVYGGVSINPQMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              G  +LI TPGR+++      + ++ ++ LV+DEAD++L++ F   ++ I S +P  R
Sbjct: 121 AMMGVSILIATPGRLIELAESNAIHLSTLKSLVLDEADKLLNLDFQEEMKRILSWIPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT+ D++ ++++  L  P  +++     + E I       Y    ++   L + 
Sbjct: 181 QNLLFSATLNDKVSEITQLILHEPIVLKIENEEDSVELI---QQTAYRVSDERKGPLLRY 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L     MK  +IF +       +   L K      AIH    Q +R K+L NFK G +++
Sbjct: 238 LIRSRNMKQVLIFTSSTFKADQVVEKLRKNNIDAQAIHSKKSQDARNKVLRNFKAGHLKV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DL +RG+DI  +  V N+++P   ++Y+HRIGRTGRA   G+A T V  ED  H  
Sbjct: 298 LVATDLISRGIDIEFLPFVINYELPRSPKDYVHRIGRTGRAESTGEALTFVTPEDEHHFK 357

Query: 359 AIEKLIEKKVDWLNGDLSSLN 379
            I+K + K+V +   D   LN
Sbjct: 358 IIQKKMGKQVPFEETDGLDLN 378


>gi|310789728|gb|EFQ25261.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 551

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 131/380 (34%), Positives = 205/380 (53%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 129 TFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 188

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 189 HINAQPLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQIRDL 248

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 249 SRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 308

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E++ ++ +FL +  ++ + +    A       V    +  K+  +++ L 
Sbjct: 309 TLMWSATWPKEVRALASDFLTDFIQVNIGSLELAANHRITQVVEVVNESEKRDRMIKHLE 368

Query: 240 QSQDTMKNGIIFCNQKKNV-VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  D  +N ++     K V   +   L + G+   +IHG+  Q  R  +L  FK G   +
Sbjct: 369 KMMDNKENKVLIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPI 428

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ ++ HV N+D PN +E+YIHRIGRTGRAG  G A T    ++ K   
Sbjct: 429 MVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAMGTAVTFFTTDNSKQAR 488

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    ++  L+ +
Sbjct: 489 DLVNVLREAKQEIDPRLAEM 508


>gi|281207583|gb|EFA81766.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 802

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 132/401 (32%), Positives = 213/401 (53%), Gaps = 4/401 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F+     P ++  ++ AG+  PT IQ ++ P+ L+  D+ G+A+TG+GKT +F+LP  
Sbjct: 398 LTFSQSHFPPYIMKEIVAAGFAAPTAIQAQSWPVALKGRDMIGLAETGSGKTLAFLLPGV 457

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +    +        P  L+L PTRELA Q+    +K+G +  +    + GG+P   Q  +
Sbjct: 458 VHINAQPFLEPNDGPIMLVLAPTRELAMQIQAECDKFGSSSKIKNCAVYGGVPKFQQTSQ 517

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G +++I TPGR++D     K  +  +  LV+DEADRMLDMGF   I+ I S +   R
Sbjct: 518 LRSGVEIVIATPGRLIDLLETRKTNLKRVTYLVLDEADRMLDMGFEDQIRKILSQIRPDR 577

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT    +Q ++ +FL++P +I++ +   +A       +    +  K+       
Sbjct: 578 QTLMFSATWPKVVQSLANDFLKDPIQIKIGSAELSANHNVKQIIEICEKNDKQ--QRLFS 635

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  IIF   K  V  L  +++  GF    IHG+  Q  R   L  FK+  IQ+
Sbjct: 636 FLEKVGDEKCIIFMETKNGVNLLQRNMQVAGFKCAGIHGDKTQGERDYSLQQFKKSGIQM 695

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLD+ D+ +V N+D PN  E+YIHRIGRTGRAG  G AFTL    D++   
Sbjct: 696 LIATDVASRGLDVKDIKYVINYDFPNTIESYIHRIGRTGRAGATGTAFTLFTTNDMRLAG 755

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
            +  ++ +   ++   L  + P           + R NN  
Sbjct: 756 ELITVLIEANQYVPPSLEQMAPNRGGFKSITEQYGRSNNRF 796


>gi|52143016|ref|YP_083814.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
 gi|51976485|gb|AAU18035.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
          Length = 450

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 150/442 (33%), Positives = 242/442 (54%), Gaps = 16/442 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T  TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR--KKNYSSQKS 418
           EK +   +     +     P ++++D    N      P P+KS  + +R  ++   S   
Sbjct: 360 EKTLGAPIQREIIE----QPKIKRVD---ENGKPLPKPAPKKSGEYRQRDSREGSRSGSK 412

Query: 419 HIPLKESEKISKLQQDIQENDA 440
             P  +S   S+ + +   N  
Sbjct: 413 GRPRNDSRNSSRNENNRSFNKP 434


>gi|302782315|ref|XP_002972931.1| hypothetical protein SELMODRAFT_98552 [Selaginella moellendorffii]
 gi|300159532|gb|EFJ26152.1| hypothetical protein SELMODRAFT_98552 [Selaginella moellendorffii]
          Length = 534

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 130/379 (34%), Positives = 203/379 (53%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+      V+  VL AG+ +PT IQ +  P+ L+  D+ G+A+TG+GKT +++LP + 
Sbjct: 91  SFAEASFPDYVLQEVLKAGFKEPTAIQAQGWPMALKGRDLVGLAETGSGKTLAYLLPAIV 150

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA Q+     K+G +  +    + GG P   Q + L
Sbjct: 151 HVNAQPYLAPGDGPIVLVLAPTRELAVQIQQESAKFGSSSKIKSTCIYGGAPKGPQIRDL 210

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 211 QRGVEIVIATPGRLIDMLEGRHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQ 270

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL +SAT   ++++++  FL +P ++ + + S  A       V     Y K    L +LL
Sbjct: 271 TLYWSATWPKDVEQLANQFLHDPYKVTIGSSSLKANHSIAQHVEVVNDYEKY-QKLIKLL 329

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    +IF   K+    +   L  +G+   +IHG+  Q  R  +LS FK G   +M
Sbjct: 330 DEFMDGGKILIFMETKRGCDQVTKQLRMEGWPALSIHGDKSQAERDWVLSEFKTGKSPIM 389

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD+ D+ +V N+D P   E+Y+HRIGRTGRAG  G A+T     + KH   
Sbjct: 390 TATDVAARGLDVKDIRYVINYDFPGSCEDYVHRIGRTGRAGAKGTAYTFFTVSNAKHARE 449

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +  ++ +    +  +L S+
Sbjct: 450 LVSILSEAGQRITPELQSM 468


>gi|302812625|ref|XP_002987999.1| hypothetical protein SELMODRAFT_269342 [Selaginella moellendorffii]
 gi|300144105|gb|EFJ10791.1| hypothetical protein SELMODRAFT_269342 [Selaginella moellendorffii]
          Length = 505

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 130/379 (34%), Positives = 203/379 (53%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+      V+  VL AG+ +PT IQ +  P+ L+  D+ G+A+TG+GKT +++LP + 
Sbjct: 86  SFAEASFPDYVLQEVLKAGFKEPTAIQAQGWPMALKGRDLVGLAETGSGKTLAYLLPAIV 145

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA Q+     K+G +  +    + GG P   Q + L
Sbjct: 146 HVNAQPYLAPGDGPIVLVLAPTRELAVQIQQESAKFGSSSKIKSTCIYGGAPKGPQIRDL 205

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 206 QRGVEIVIATPGRLIDMLEGRHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQ 265

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL +SAT   ++++++  FL +P ++ + + S  A       V     Y K    L +LL
Sbjct: 266 TLYWSATWPKDVEQLANQFLHDPYKVTIGSSSLKANHSIAQHVEVVNDYEKY-QKLIKLL 324

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    +IF   K+    +   L  +G+   +IHG+  Q  R  +LS FK G   +M
Sbjct: 325 DEFMDGGKILIFMETKRGCDQVTKQLRMEGWPALSIHGDKSQAERDWVLSEFKTGKSPIM 384

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD+ D+ +V N+D P   E+Y+HRIGRTGRAG  G A+T     + KH   
Sbjct: 385 TATDVAARGLDVKDIRYVINYDFPGSCEDYVHRIGRTGRAGAKGTAYTFFTVSNAKHARE 444

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +  ++ +    +  +L S+
Sbjct: 445 LVSILSEAGQRITPELQSM 463


>gi|223984537|ref|ZP_03634669.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM
           12042]
 gi|223963523|gb|EEF67903.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM
           12042]
          Length = 556

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 148/404 (36%), Positives = 224/404 (55%), Gaps = 10/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LSP++  A+ D GY + T IQ   IP+V+   DV G +QTGTGKTA+F +P++
Sbjct: 1   MKFNELNLSPEMSRAIADCGYTEATYIQSACIPVVMNGGDVIGQSQTGTGKTAAFAIPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
            +LE    +   P+ LIL PTRELA QV D   K+ K    +    + GG     Q  +L
Sbjct: 61  EMLEVTDRK--RPQALILSPTRELAMQVCDEIRKFTKYKEGIRTVAVYGGQQISKQILEL 118

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GAD+++ TPGR+LDH  R  L  +   +LV+DEAD ML+MGF   I+ +   +P  RQ
Sbjct: 119 KKGADIVVGTPGRVLDHIRRRTLRFDQCRVLVLDEADEMLNMGFREDIETVIEALPQQRQ 178

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + +++  +  NP  I+          IE  +     +  K+  +     
Sbjct: 179 TVLFSATMPKPILEITSQYQTNPVHIKTPQTQINTPKIEQVYYVCPKEAKKEILMQL--- 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S       +IFCN KK V  L   L  +G+   A+HG++ Q  R  ++ NFK+G I ++
Sbjct: 236 ISMQNPHLAMIFCNTKKMVDELTSDLVSKGYPAAALHGDMKQEMRTGVMDNFKKGKINIL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  +  VFN+D+P  +E Y+HRIGRTGRAG+ G A TL+       +  
Sbjct: 296 VATDVAARGIDVDSMDVVFNYDLPQESEYYVHRIGRTGRAGKEGLAVTLITARQKYALRD 355

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE-KIDIAQHN-HARKNNPIPQ 401
           +E+    K+      L SL    + ++D  + +   R    +P+
Sbjct: 356 LERTTRSKLTQKP--LPSLEEVRKIRLDFLREDLEHRMTRDVPE 397


>gi|193071050|ref|ZP_03051977.1| ATP-dependent RNA helicase RhlB [Escherichia coli E110019]
 gi|192955637|gb|EDV86113.1| ATP-dependent RNA helicase RhlB [Escherichia coli E110019]
          Length = 421

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 138/413 (33%), Positives = 208/413 (50%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+ + P  ++ +G
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTSAPRNRRRSG 421


>gi|325103156|ref|YP_004272810.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324972004|gb|ADY50988.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 411

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 132/375 (35%), Positives = 204/375 (54%), Gaps = 9/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +    P++   +   G+ K TPIQ +TIPLVLQ  D+   AQTGTGKTAS++LP+L
Sbjct: 1   MNFEEFNFVPELQEGLDSMGFSKATPIQEQTIPLVLQNKDIIACAQTGTGKTASYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI---GGIPFEAQNK 117
             + + +       TLIL PTRELA Q+             T   +     G+ +E Q +
Sbjct: 61  NKIYQKQTEK--INTLILVPTRELALQIDQQIMGLAYFTQATSIAVYGGGDGVDYEQQKR 118

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ TPGRI+ H   GK+  +++E L++DEADRMLDMGF   I  I S +P  
Sbjct: 119 SLREGVNIIVATPGRIIAHLTSGKIKFDSLEHLILDEADRMLDMGFYDDIVRIISYLPQK 178

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM   ++       +   +       + ++  E      Y  +  +   L  
Sbjct: 179 RQNLLFSATMPPRIRG----LAKKILKHPAEVNIAISKPSEGINQLAYMAFDNQKGRLLM 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +      K+ IIF ++K+ V ++   L K+G    A H +++Q  R +I++ FK G + 
Sbjct: 235 SILKDGGFKSIIIFASKKETVKSINSELNKKGIKSEAFHSDLEQHQREEIMNRFKGGQLS 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +D+ +RG+D+  +  V N+DVP   E+YIHRIGRT RA   G A T +  +D    
Sbjct: 295 VLVGTDVISRGIDVVGIDLVVNYDVPPDPEDYIHRIGRTARAEATGTAITFINDKDQNKF 354

Query: 358 DAIEKLIEKKVDWLN 372
             IEKLIE++++ + 
Sbjct: 355 HRIEKLIEREIEKIP 369


>gi|217970097|ref|YP_002355331.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
 gi|217507424|gb|ACK54435.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
          Length = 677

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 142/369 (38%), Positives = 217/369 (58%), Gaps = 6/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ A+ + GY  P+PIQ   IP +L  HD+ G AQTGTGKTA+F LPML
Sbjct: 16  LRFADLQLPAPLLSALAEVGYETPSPIQAACIPQLLAGHDILGEAQTGTGKTAAFALPML 75

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L+    R   P+ L+L PTRELA QVA+ F KY  +      L I  G     Q ++L
Sbjct: 76  AKLDLADTR---PQVLVLTPTRELAIQVAEAFAKYAHHLKNFHVLPIYGGQSMVVQLRQL 132

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA V++ TPGR++DH  R  L ++ ++ +V+DEAD ML MGFI  ++ I    P  RQ
Sbjct: 133 SRGAQVVVGTPGRVMDHLERESLKLDALKAIVLDEADEMLRMGFIDDVEWILEHTPAERQ 192

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + +++V+   L+NP+ I++   +ST   I   +             L ++L
Sbjct: 193 TALFSATMPNVIREVARRHLRNPQEIKIRAATSTVAKISQRYWLVRGVDK--LDALTRIL 250

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++++    ++F   K     L   L  +G++  A++G+++Q  R +++   K G + ++
Sbjct: 251 DAEESFDAALVFVRTKIATEELADKLAARGYAAAALNGDMNQGLRERVIEQLKNGALDIV 310

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+P V HV N+D+P   E Y+HRIGRTGRAGR G A   VA  + + +  
Sbjct: 311 IATDVAARGIDVPRVSHVINYDIPYDTEAYVHRIGRTGRAGREGVAILFVAPRETRMLKM 370

Query: 360 IEKLIEKKV 368
           IE+   + +
Sbjct: 371 IERATRQPI 379


>gi|148906344|gb|ABR16327.1| unknown [Picea sitchensis]
          Length = 504

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 131/379 (34%), Positives = 204/379 (53%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D G    V+  ++ AG+ +PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP + 
Sbjct: 100 NFGDAGFPDYVIEEIVKAGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 159

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA Q+     K+G +  +    + GG P   Q + L
Sbjct: 160 HVNAQPYLAPGDGPIVLVLAPTRELAVQIQQEAAKFGASSKIKNTCIYGGAPKGPQVRDL 219

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 220 SKGVEIVIATPGRLIDMLESQHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQ 279

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL +SAT   E++ ++   L NP ++ + +    A       V   +++ K    L QLL
Sbjct: 280 TLYWSATWPKEVELLARQSLHNPYKVIIGSSDLKANHAIEQIVEIVSEHEKY-TRLIQLL 338

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +IF   KK    +   L   G+   +IHG+  Q  R  +LS FK G   +M
Sbjct: 339 EEIMDGSRLLIFLETKKGCDQVTRKLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 398

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD+ D+  V N+D P   E+Y+HRIGRTGRAG  G A+T     + +    
Sbjct: 399 TATDVAARGLDVKDIKCVINYDFPGSMEDYVHRIGRTGRAGAKGTAYTYFTAANARFARD 458

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E+    ++  L+ +
Sbjct: 459 LIKILEEAGQSISPSLAEM 477


>gi|332307071|ref|YP_004434922.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174400|gb|AEE23654.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 446

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 123/444 (27%), Positives = 212/444 (47%), Gaps = 6/444 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DL L  ++  A+   G+ + T IQ + IP  L   D+   ++TG+GKT +F+LP +
Sbjct: 1   MQFSDLPLDHRLGKALEIKGFTQATEIQAQAIPYALMGKDLIASSKTGSGKTLAFLLPAV 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   +    + PR LIL PTRELA QV    +     + L  AL++GG  F  Q K L
Sbjct: 61  QRVLTKQPLSRKDPRVLILAPTRELAKQVFFQLKWLIAKHQLKAALILGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                 ++ T GRI DH +   L +N +E+L++DEADRMLD+GF   ++ I +     ++
Sbjct: 121 RHYPQFVVGTAGRIADHLSGKSLYLNGLEMLIMDEADRMLDLGFSEQLKQINAAADHRKR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +  +   D                 ++   S+AE  +       A        +   +
Sbjct: 181 QSMMFSATLDNAALHHLTQSMLKAPQRISIGISSAEHKDIQQRFFLADNVTHKERMLAHI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  I+F   + +   L   L++QG    A+ GN+ Q  R  I+S F  G   ++
Sbjct: 241 INEKDHRQVIVFTATRADTERLSSLLKEQGLYSIALSGNLSQGQRNNIMSEFGRGQQHIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+ +V  V NFD+P  A+ Y+HR+GRTGRAG  G+A + V  +D     +
Sbjct: 301 VTTDIASRGLDLLNVSLVVNFDLPKLADEYVHRVGRTGRAGNKGEAVSFVGPKDWASYLS 360

Query: 360 IEKLIEKKVDWLNGD-----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           I+  +++++ +   +        L PP +     +    +  N      +G + +  N  
Sbjct: 361 IKSFLQQEISFSEIEGQEAKFKGLRPPKKAKPTVKKTAGKSENNKGNAGSGANNQGPNRV 420

Query: 415 SQKSHIPLKESEKISKLQQDIQEN 438
                  + +     K ++ IQ++
Sbjct: 421 KPMQGTEVGDRPMKRKPRKPIQDD 444


>gi|226487070|emb|CAX75400.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum]
 gi|226487074|emb|CAX75402.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum]
 gi|226487078|emb|CAX75404.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum]
          Length = 768

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 140/421 (33%), Positives = 230/421 (54%), Gaps = 7/421 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F +L +   ++  +   G+  PTPIQ +  P+ L   DV GIAQTG+GKTA+F+LP  
Sbjct: 89  LSFNELSVPDYILSVIAKNGWQLPTPIQSQGWPMALSGRDVVGIAQTGSGKTATFLLPAV 148

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  + +    R   P  L+L PTRELA QV    +++    +L      GG     Q ++
Sbjct: 149 IHIMAQPRLLRNEGPICLVLVPTRELAQQVLSVAKEFADAASLRAICFYGGSAKGTQLRE 208

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +++G ++ I TPGR++D     + L++ +  LV+DEADRMLDMGF P I+ I S V   R
Sbjct: 209 MQKGGEICIATPGRLIDFIRVQRNLLSRVTYLVLDEADRMLDMGFEPQIRKILSHVRPDR 268

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+Q ++  FL +  ++ + + S  A       V     + K+  L++ L
Sbjct: 269 QTLMWSATWPKEVQTLAREFLTDYIQVNIGSVSLHANPNITQIVEIMDDWRKEQRLIELL 328

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     ++F   K+    L +SL ++GF V A+HG   QR R   L++FK G + +
Sbjct: 329 SSFGR--SRTLVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLASFKSGRMNI 386

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDI ++ +V NFD PN+ E+YIHRIGRT R+ + G AFT    ++ +   
Sbjct: 387 LIATDVASRGLDIDNIEYVVNFDFPNQTEDYIHRIGRTARSDKRGTAFTFFTYKNARQAR 446

Query: 359 AIEKLIEKKVDWLNGD---LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            + +++++    +  +   L+ ++  L K    + N        P + TGF     ++ S
Sbjct: 447 DLIEILDEANQEITPELIQLAGMSSYLRKSGPLKKNPPAFQQKPPGRITGFGNSSSSFPS 506

Query: 416 Q 416
           Q
Sbjct: 507 Q 507


>gi|254669919|emb|CBA04478.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis alpha153]
          Length = 457

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 157/447 (35%), Positives = 252/447 (56%), Gaps = 29/447 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP L  
Sbjct: 5   FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 63  LEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+  + Q  
Sbjct: 65  LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTA 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++P  
Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  ++K++++F+  P+ +EV   ++T   +E   +A      +      +
Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNL---LE 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L     M   I+FC  K++V  +   L ++  S  AIHG+  Q+SR++ L+ FK+G+++
Sbjct: 242 RLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + K  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           ++I++L   K+             +E+I+  +     +    P+K+   + R++N     
Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKTEMREPRQRNRY--- 406

Query: 418 SHIPLKESEKISKLQQDIQENDADSLG 444
                 ES +  + +    E  A+  G
Sbjct: 407 ------ESARAQREKNTRPETTANDAG 427


>gi|269797693|ref|YP_003311593.1| DEAD/DEAH box helicase [Veillonella parvula DSM 2008]
 gi|269094322|gb|ACZ24313.1| DEAD/DEAH box helicase domain protein [Veillonella parvula DSM
           2008]
          Length = 432

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 146/436 (33%), Positives = 233/436 (53%), Gaps = 20/436 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+  +++ A+   G  +PTPIQ ++IP+V + +DV   AQTGTGKT +F+LP+L 
Sbjct: 3   SFKSLGVCDELIIALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPILQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +      V   + LI+ PTREL  Q++D  ++ G   N+ +  LIGG   EAQ ++L R
Sbjct: 63  RVHT---DVHQEQVLIIAPTRELIKQISDEAKELGSILNVDILPLIGGKTIEAQLQQLGR 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+LDH  RG L ++ I  +V+DEAD+ML MGF+P I+N+ S     RQ L
Sbjct: 120 RPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLISQTDANRQLL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ D+++ +++ ++  P  +       T E+I+        +           +  
Sbjct: 180 LFSATIPDKIRNLAKAYMSKPISVTAEGKHITLESIDQRVYMMNPEEK---TQRLIKMIE 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D     I+FCN+++  + L + L   G ++  +HG++ Q  R +IL +F +   Q++VA
Sbjct: 237 DDNPFLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI  + HV+N+DVP   + YIHRIGRTGRAG  G A T    +D   +  IE
Sbjct: 297 TDIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGIAVTFATPQDEAWLRRIE 356

Query: 362 KLIEKKVDWLNGD-------LSSLNPPLEKI-------DIAQHNHARKNNPIPQKSTGFD 407
           + I+  +     D        +S  P   K+          Q   A+ +     K +   
Sbjct: 357 RAIQATLTKYTKDGQIKTKGNASTAPKRTKLVSKPKVTSTYQSTKAKAHKARGHKGSNTR 416

Query: 408 RRKKNYSSQKSHIPLK 423
           +R+ + S        +
Sbjct: 417 QRRASTSQTGRRGKRR 432


>gi|42521946|ref|NP_967326.1| putative ATP-dependent RNA helicase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574476|emb|CAE77980.1| putative ATP-dependent RNA helicase [Bdellovibrio bacteriovorus
           HD100]
          Length = 412

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 136/390 (34%), Positives = 213/390 (54%), Gaps = 4/390 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    LS  ++  + D G+ + T IQ K IP +L+  DV  IAQTGTGKTA+F +P++
Sbjct: 1   MKFEKFHLSEDLLRNLTDNGFFRTTDIQYKAIPSILKGEDVLAIAQTGTGKTAAFAIPII 60

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            ++   +   R    + LIL PTRELA Q+ + F K  K+  +    L GG+  +AQ +K
Sbjct: 61  NMIHTEKSSKRAIGIKCLILVPTRELAQQIGEVFNKLSKHTKVKPFALFGGVEQDAQIQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+LI TPGR+ D   +G + ++ IE LV+DEAD MLD+GFI  I ++   +    
Sbjct: 121 LQDGIDILISTPGRMFDLIAQGHVDISRIETLVLDEADHMLDLGFIDDITSVKRKLTKRH 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSAT+  E++K++ + +++       +P          FV       K+       
Sbjct: 181 QTLFFSATINPEIKKLAFSQVRSSAIRIQISPEDPVSKNITHFVMHVEMDDKRFF--LAE 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q+     IIF   +     +  +L +       +HG  DQ  R +++  F++G  ++
Sbjct: 239 YLRQNPDGKFIIFVRTRVRAERVAKALARVEVQSLTLHGEKDQTDRAEVMKTFRKGDCKI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+DL+ARG+DIPDV HV N+D+P + ENY+HRIGRTGR    G A +  + E+   + 
Sbjct: 299 LIATDLSARGIDIPDVTHVINYDLPEKPENYVHRIGRTGRGFNKGVAVSFCSTEEKPLLA 358

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
            +E LI KK++ L          +E  D++
Sbjct: 359 EVESLITKKIEVLKVSKQDYKAIVETQDLS 388


>gi|281490897|ref|YP_003352877.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis
           subsp. lactis KF147]
 gi|281374655|gb|ADA64175.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus
           lactis subsp. lactis KF147]
          Length = 547

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 148/384 (38%), Positives = 232/384 (60%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  +V  + + GY +PTPIQ +TI L L+  DV G AQTGTGKTA+F LP +
Sbjct: 1   MKFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    L++ PTRELA Q  +   ++GK+  L V  + GG   E Q K L+
Sbjct: 61  EKIDASNPAIQ---ALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIKGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR++D   R  + ++ +E L++DEAD ML+MGF+  I  I    P  RQT
Sbjct: 118 AGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPEARQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM ++++K+   F++NP+ I++     TA+ I+  FV T          +   L 
Sbjct: 178 LLFSATMPNDIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKTKEFEK---FDVLTRLL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +G+    +HG++DQ  R+ +L +FK G I ++V
Sbjct: 235 DVERPELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++ AI
Sbjct: 295 ATDVAARGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E + +K        +  L PP ++
Sbjct: 355 ENMTKKP-------MKGLKPPTKE 371


>gi|228918066|ref|ZP_04081594.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841546|gb|EEM86662.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 481

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 138/419 (32%), Positives = 234/419 (55%), Gaps = 15/419 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++  LS +V  A+   GY +PT +Q + IP+ LQ+ D+   +QTG+GKTASF +P+  
Sbjct: 5   SFSNYALSKEVRRALTGLGYERPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ L+L PTRELA QV ++    G+   +  A + G  PF  Q  +L++
Sbjct: 65  MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ ++++++S  ++  P  IE+     T + IEH     +    ++   L + + +
Sbjct: 182 LFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEH---TLFEVREEEKLSLLKDVTT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  ++NV ++   L++  +    IHG + Q  R  ++ +F++G  + +VA
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG  GKA T +   + + ++ IE
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIE 358

Query: 362 KLIEKKV---------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
             I   +         + + G  +       K  I +   A  N  I +      ++KK
Sbjct: 359 VYIGFAIPKANAPSKEEVMKGKAAFEEKIQAKPTIKKDKSADINKGIMKLYFNGGKKKK 417


>gi|168751737|ref|ZP_02776759.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753673|ref|ZP_02778680.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4401]
 gi|168768057|ref|ZP_02793064.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775673|ref|ZP_02800680.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4196]
 gi|168780675|ref|ZP_02805682.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786614|ref|ZP_02811621.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC869]
 gi|168800996|ref|ZP_02826003.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC508]
 gi|195938068|ref|ZP_03083450.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4024]
 gi|208809105|ref|ZP_03251442.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812626|ref|ZP_03253955.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819057|ref|ZP_03259377.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397506|ref|YP_002273298.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4115]
 gi|254795778|ref|YP_003080615.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           TW14359]
 gi|261225554|ref|ZP_05939835.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255600|ref|ZP_05948133.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. FRIK966]
 gi|291285195|ref|YP_003502013.1| ATP-dependent RNA helicase RhlB [Escherichia coli O55:H7 str.
           CB9615]
 gi|226739531|sp|B5YY28|RHLB_ECO5E RecName: Full=ATP-dependent RNA helicase rhlB
 gi|187768819|gb|EDU32663.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014285|gb|EDU52407.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4113]
 gi|189001565|gb|EDU70551.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189359231|gb|EDU77650.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362707|gb|EDU81126.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189373308|gb|EDU91724.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC869]
 gi|189376769|gb|EDU95185.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC508]
 gi|208728906|gb|EDZ78507.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733903|gb|EDZ82590.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739180|gb|EDZ86862.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158906|gb|ACI36339.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4115]
 gi|209753518|gb|ACI75066.1| thioredoxin 1 [Escherichia coli]
 gi|209753520|gb|ACI75067.1| thioredoxin 1 [Escherichia coli]
 gi|209753522|gb|ACI75068.1| thioredoxin 1 [Escherichia coli]
 gi|209753524|gb|ACI75069.1| thioredoxin 1 [Escherichia coli]
 gi|209753526|gb|ACI75070.1| thioredoxin 1 [Escherichia coli]
 gi|254595178|gb|ACT74539.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. TW14359]
 gi|290765068|gb|ADD59029.1| ATP-dependent RNA helicase RhlB [Escherichia coli O55:H7 str.
           CB9615]
 gi|320191126|gb|EFW65776.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC1212]
 gi|320639264|gb|EFX08886.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           G5101]
 gi|320644649|gb|EFX13699.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H- str.
           493-89]
 gi|320649974|gb|EFX18477.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H- str. H
           2687]
 gi|320655320|gb|EFX23262.1| ATP-dependent RNA helicase RhlB [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320660945|gb|EFX28388.1| ATP-dependent RNA helicase RhlB [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666069|gb|EFX33083.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326344238|gb|EGD67998.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           1125]
          Length = 421

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 139/413 (33%), Positives = 208/413 (50%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L         +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  CLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGAPRNRRRSG 421


>gi|15672332|ref|NP_266506.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723219|gb|AAK04448.1|AE006272_2 ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326405930|gb|ADZ63001.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis
           subsp. lactis CV56]
          Length = 547

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 148/384 (38%), Positives = 232/384 (60%), Gaps = 13/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGLS  +V  + + GY +PTPIQ +TI L L+  DV G AQTGTGKTA+F LP +
Sbjct: 1   MKFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++    L++ PTRELA Q  +   ++GK+  L V  + GG   E Q K L+
Sbjct: 61  EKIDASNPAIQ---ALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIKGLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR++D   R  + ++ +E L++DEAD ML+MGF+  I  I    P  RQT
Sbjct: 118 AGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPEARQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM ++++K+   F++NP+ I++     TA+ I+  FV T          +   L 
Sbjct: 178 LLFSATMPNDIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKTKEFEK---FDVLTRLL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +G+    +HG++DQ  R+ +L +FK G I ++V
Sbjct: 235 DVERPELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++ AI
Sbjct: 295 ATDVAARGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E + +K        +  L PP ++
Sbjct: 355 ENMTKKP-------MKGLKPPTKE 371


>gi|329900791|ref|ZP_08272595.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
 gi|327549380|gb|EGF33948.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
          Length = 468

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 153/474 (32%), Positives = 245/474 (51%), Gaps = 39/474 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   V+ A+ ++GY+KPT +Q + IP  ++  D+   +QTG+GKTA+F+LP L
Sbjct: 1   MTFEALGLHTSVIKALTESGYIKPTSVQEQAIPAAIEGRDLLVSSQTGSGKTAAFMLPAL 60

Query: 61  TIL--------------------------EKGRARVRMPRTLILEPTRELAAQVADNFEK 94
                                        E+ R +   P+ L+L PTRELA QV    +K
Sbjct: 61  HKFATAAELQLADSSKTPNQEKQSALARGERPRFKAAQPKMLVLTPTRELALQVTTATDK 120

Query: 95  YGKNYNLTVALLI-GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVID 153
           YG       A+ I GG+P+  Q + L +  ++L+ TPGR++DH   GK+  + +EILV+D
Sbjct: 121 YGSQMRRIKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLEILVLD 180

Query: 154 EADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
           EADRMLDMGFI  I+ I +  P +RQT+LFSAT+   +  +++   +NP  I++   ++ 
Sbjct: 181 EADRMLDMGFIDDIEKIVAATPESRQTMLFSATLDGVVGNMAKRITKNPMIIQIAGSATK 240

Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            E I            K    L   L   +TM   ++F   K++   +   L   GF+  
Sbjct: 241 HENISQRVHFVDDLSHKNR--LLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAA 298

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
           A+HG++ Q +R + L   + G ++++VA+D+AARG+D+P + HVFN+D+P   E+Y+HRI
Sbjct: 299 ALHGDMHQGARNRTLDGMRRGQVRVLVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 358

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           GRTGRAGR+G A +LV   +  ++  IE+  ++ +             +E  +  +   A
Sbjct: 359 GRTGRAGRNGIAVSLVNHAEGINVKRIERFTKQLIPV---------EVIEGFEPKKTASA 409

Query: 394 RKNNPIPQKSTGFDRRKKNYSSQKSH-IPLKESEKISKLQQDIQENDADSLGFR 446
            ++   P      D R      Q++   P    +  S   +  +  DA     R
Sbjct: 410 PRSGQKPGGWKPGDNRSAAKPGQRTFSKPSAPRKDGSSFSKGPRTGDAGGAARR 463


>gi|227327833|ref|ZP_03831857.1| ATP-dependent RNA helicase DeaD [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 635

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 134/378 (35%), Positives = 225/378 (59%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+  ++ A+ D GY KP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   SFADLGLNTSILNALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     ++ P+ L+L PTRELA QVA+    + K+ +    + +  G  ++ Q + L 
Sbjct: 67  NLKP---ELKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++NI + +P   QT
Sbjct: 124 GGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAQHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F+++P+ + + +  +T   I   +         +         
Sbjct: 184 ALFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTVQGMRKNEA---LVRFL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  +
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV 360

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 361 ERTMKLTIPEVELPNAEL 378


>gi|158530232|gb|ABW71831.1| putative RNA helicase [Phytophthora infestans]
          Length = 544

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 134/381 (35%), Positives = 204/381 (53%), Gaps = 4/381 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +      V+  V+  G+ KPTPIQ +  P+ L   D+ GI+ TG+GKT +F+LP +
Sbjct: 141 LSFEEASFPEYVLEEVVRLGFDKPTPIQCQGWPMALSGRDMVGISATGSGKTLAFLLPAI 200

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +           P  L++ PTRELA Q+     K+G +  +    + GG+P   Q   
Sbjct: 201 VHINAQPYLQPGDGPIVLMIAPTRELAVQIQAECNKFGASSKIKNTCVYGGVPKGGQIAD 260

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG ++ ICTPGR++D  + GK  +  +  LV+DEADRMLDMGF P ++ I S +   R
Sbjct: 261 LRRGVEICICTPGRMIDMLSMGKTNLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDR 320

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+  ++ +FL +  ++ V +   TA       V     + K  +L    
Sbjct: 321 QTLMWSATWPKEIVALANDFLTDFIQVTVGSLDLTANKRIKQIVEVMDDHQKYSSLQDH- 379

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+        IIFC  K+    L  +L    +   AIHGN  Q  R  +L  FK+G  Q+
Sbjct: 380 LRDIYEGGRIIIFCETKRGADELSRNLRNTRYICKAIHGNKSQEERDYVLREFKDGRTQI 439

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHI 357
           +VA+D+A+RGLDI D+ +V NFD+P   E+YIHRIGRT RAG  G + +      + +  
Sbjct: 440 LVATDVASRGLDIKDIRYVVNFDMPKNIEDYIHRIGRTARAGNKGTSISFFTASNNGRLA 499

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K++E+    +  +L  L
Sbjct: 500 GPLVKIMEEAEQEVPRELRDL 520


>gi|88859340|ref|ZP_01133980.1| hypothetical protein PTD2_20192 [Pseudoalteromonas tunicata D2]
 gi|88818357|gb|EAR28172.1| hypothetical protein PTD2_20192 [Pseudoalteromonas tunicata D2]
          Length = 413

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 159/417 (38%), Positives = 253/417 (60%), Gaps = 7/417 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL  ++V AV + GY +PTPIQ++ IP+VL+  DV  +A TGTGKTA F LPM+
Sbjct: 1   MSFDALGLCDELVKAVTEQGYTQPTPIQVEAIPVVLRLRDVMAVANTGTGKTAGFTLPMV 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L  G  A+ +  R L++ PTRELAAQVA N + Y ++ N++ A++ GG+  E Q  +L
Sbjct: 61  QLLSGGAIAQPKSVRALVITPTRELAAQVAQNVQDYSRHTNISSAVVFGGVRIEPQIAQL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D +N+  +  N +E+LV+DEADRMLD+GFI  I++I +L+P  RQ
Sbjct: 121 ATGVDVLVATPGRLVDLYNQQAINFNQLELLVLDEADRMLDLGFIDDIRHIQTLLPSERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT +DE++ +++  L NP+ IEV+  +ST +T++            +  +     
Sbjct: 181 TLMFSATFSDEIKSLAKGMLNNPQLIEVSPVNSTVDTVKQKIYPVDKTRKSEALIYLLKK 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  ++F   K+   +L   L   G +  +IH N  Q +R   L+ FK G I+++
Sbjct: 241 HQW---RQVLVFSRTKQGADSLVTQLNNAGINSASIHANRTQHARTHALNGFKSGEIKVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RG+D+  +  V N D+P  AE+Y+HRIGRTGRAG  G A +L + ++   + A
Sbjct: 298 VATDIASRGIDVNQLPCVINLDLPYVAEDYVHRIGRTGRAGTAGLAISLFSIDESNQLQA 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           IE+L+ + +  + L     S    + K D  ++ +  + +P P+   G  +++K   
Sbjct: 358 IERLLGRTLAREVLPNFAPSEKKAVSKFDDDEYGNF-EPDPEPRSGKGKSQKRKGKR 413


>gi|126644118|ref|XP_001388195.1| hypothetical protein [Cryptosporidium parvum Iowa II]
 gi|126117268|gb|EAZ51368.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
          Length = 586

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 130/416 (31%), Positives = 209/416 (50%), Gaps = 6/416 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   G    +V A+   G+ +PT IQ++  P+ L  HD+ GIA+TG+GKT  F+LP + 
Sbjct: 169 SFVTSGFPNFLVDALYRTGFTEPTAIQVQGWPVALSGHDMIGIAETGSGKTLGFLLPAMI 228

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTREL  Q+ +   ++G  + L    + GG+P   Q   +
Sbjct: 229 HIRAQPLLRYGDGPICLVLAPTRELVEQIREQANQFGSIFKLRNTAIYGGVPKRPQQASI 288

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G ++ I  PGR++D    G   ++ +  LV+DEADRMLDMGF P I+ + S +   RQ
Sbjct: 289 RNGVEICIACPGRLIDLLEEGYTNLSRVTYLVLDEADRMLDMGFEPQIRKLVSQIRPDRQ 348

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS---KKCALLQ 236
           TLL+SAT   E+QK++ +  +              +   +             K    + 
Sbjct: 349 TLLWSATWPKEVQKLARDLCKEIPIHINVGSVDALKASHNIKQYVNVVEESEKKAKLKMF 408

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                 ++    +IFC  K+    L   L   G+    IHG+  Q  R  +L+ F+ G  
Sbjct: 409 LGQVMVESAPKVLIFCETKRGADILTKELRLDGWPALCIHGDKKQEERTWVLNEFRTGAS 468

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +M+A+D+AARGLDI D+  V NFD PN+ E+YIHRIGRTGRAG  G + +    +  + 
Sbjct: 469 PIMIATDVAARGLDIKDINFVINFDFPNQIEDYIHRIGRTGRAGATGVSLSFFTPDKYRM 528

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
              + K++++    +  +L  L+P  +++   ++   R+NNP      G +R  ++
Sbjct: 529 ASDLIKVLKEAKQRVPPELFKLSPQNKRMH-PRNTGFRRNNPNSLPLGGSNRAYRD 583


>gi|291389880|ref|XP_002711450.1| PREDICTED: DEAD box polypeptide 17 [Oryctolagus cuniculus]
          Length = 835

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 206/379 (54%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 277 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 336

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 337 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 396

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 397 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 456

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL++  +I V     +A       V    +  K   L+Q + +
Sbjct: 457 LMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 516

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 517 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 576

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    
Sbjct: 577 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 636

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E+    +N  L  L
Sbjct: 637 LIKVLEEANQAINPKLMQL 655


>gi|288942738|ref|YP_003444978.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288898110|gb|ADC63946.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
           180]
          Length = 662

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 140/372 (37%), Positives = 211/372 (56%), Gaps = 7/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLSP +  AV + GY  PT IQ + IP +L   D+ G AQTGTGKTA+F LPML+ 
Sbjct: 11  FDALGLSPVIAQAVKNLGYESPTAIQSQCIPHLLAGRDLLGQAQTGTGKTAAFALPMLSR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    +   P+ L+L PTRELA QVA+ F++Y  +      L I  G  +  Q  +L+R
Sbjct: 71  LDPDLRK---PQVLVLTPTRELALQVAEAFQRYATDLKGFNVLPIYGGQGYGLQLSQLKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR++DH  RG L +++I  LV+DEAD ML+MGF   I  I    P  RQ  
Sbjct: 128 NPQVIVGTPGRVMDHIRRGTLALDSIRALVLDEADEMLNMGFAEDIDWIFDQAPAERQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +++V++  L +P  +++   S T +TIE         +      +   +  
Sbjct: 188 LFSATMPPAIRRVAQTRLVDPVEVKIAANSETVDTIEQHHCIVTRFHK---LDVLTRIME 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     +IF   K     L   L+  GF+   ++G+++Q  R + +   K+G + ++VA
Sbjct: 245 LEPFDGLLIFVRTKNATTELADKLKAHGFAAEPLNGDMNQEMRERTVERLKQGQLDVLVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P     Y+HRIGRTGRAGR G+A  LV   +   + +IE
Sbjct: 305 TDVAARGLDVERISHVVNYDIPTDPSAYVHRIGRTGRAGRAGRAILLVEPRERGLLKSIE 364

Query: 362 KLIEKKVDWLNG 373
           ++I + +  +  
Sbjct: 365 RVIRRPIPSMEP 376


>gi|260945084|ref|XP_002616840.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238850489|gb|EEQ39953.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 517

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 118/376 (31%), Positives = 188/376 (50%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L  +++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTASFV+P L 
Sbjct: 31  SFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFVIPTLQ 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    ++   + LIL PTRELA Q +      GK+  +   +  GG   +    +L  
Sbjct: 91  MVKP---KLNKTQALILVPTRELALQTSQVVRTLGKHLGINCMVTTGGTNLKDDIMRLHD 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL+ TPGR+LD  +R     +   + ++DEAD+ML   F   I+ I +  P  RQ+L
Sbjct: 148 PVHVLVGTPGRVLDLASRNLADFSECPLFIMDEADKMLSREFKNVIEQILTFFPEGRQSL 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F+                T+            K+       L S
Sbjct: 208 LFSATFPYAVKS----FMDKHLTKPYEINLMDELTLRGISQFYAFVEEKQKLHCLNTLFS 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S    H  + Q++R K+   F++G ++ +V 
Sbjct: 264 KLQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVC 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L++  D  ++  IE
Sbjct: 324 SDLLTRGIDVQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYNLYKIE 383

Query: 362 KLIEKKVDWLNGDLSS 377
           + +  +++ +   +  
Sbjct: 384 QELGTEINPIPAVIDK 399


>gi|304671|gb|AAA16339.1| DEAD-box protein [Drosophila melanogaster]
 gi|313850|emb|CAA80804.1| DEAD-box protein [Drosophila melanogaster]
          Length = 527

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 120/441 (27%), Positives = 200/441 (45%), Gaps = 12/441 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +V  +   G    TPIQ K IP +L   D  G A+TG+GKT +F LP+L  
Sbjct: 9   FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILER 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PT ELA Q+++ F   G+   + V ++ GG     +++KL + 
Sbjct: 69  LSE---EPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQR 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++  PGR+ DH         +    ++ +    +  G      +I        +  L
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADPMLNGDFDESLSIIERCLPKTRQNL 185

Query: 183 FSATMTDELQKVSENFL---QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           F +    +  K S  F       +  E +   +         V+             +  
Sbjct: 186 FFSATMKDFIKESSIFPIASDCFEWCEASAVRTVETLDHGYLVSADYDPDMVLIEALRKY 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++   N +IF N KK    L  +L+        +HG + Q+ R+  LS FK   I+ +
Sbjct: 246 REENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIRTL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           +A+D+AARGLDIP V  V N  +P   + YIHR+GRT RAGR G + ++     D++ + 
Sbjct: 306 IATDVAARGLDIPSVELVMNHILPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLA 365

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           AIE+ I  K+     D       +E+I   Q N  R+ + +   +  FD R +NY  +  
Sbjct: 366 AIEEEINTKLTEHPID----QRMVERI-FMQVNVTRRESEMQLDNNCFDERAQNYRRKTW 420

Query: 419 HIPLKESEKISKLQQDIQEND 439
            +  K+ +++  L +  Q++ 
Sbjct: 421 IMEGKDPDQMEALYRKKQKDK 441


>gi|322799398|gb|EFZ20748.1| hypothetical protein SINV_08125 [Solenopsis invicta]
          Length = 764

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 146/440 (33%), Positives = 227/440 (51%), Gaps = 3/440 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F   G    ++  +    Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 255 SFGHFGFDDALIKTIRKNEYTQPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFIWPMLV 314

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + ++       P  LIL PTREL+ Q+    +K+GK YN+ V    GG     Q+K L
Sbjct: 315 HIMDQRELKAGDGPIGLILAPTRELSQQIYQEAKKFGKVYNIQVCCCYGGGSKWEQSKAL 374

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA++++ TPGR++D        +  +  LV+DEADRM DMGF P +++I + V   RQ
Sbjct: 375 ESGAEIVVATPGRMIDLVKMKATNLTRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQ 434

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P RI           +    +  +   S K   L Q L
Sbjct: 435 TLLFSATFKKKVEKLARDILTDPIRIVQGDVGEANTDVTQHVIMFHNNPSGKWNWLLQNL 494

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               +  + +IF  +K N   L ++L+ + F V  +HG++DQ  R K+++ FK+  +  +
Sbjct: 495 VEFLSAGSLLIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQLERNKVITAFKKKDVSTL 554

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G AFTLV ++D +    
Sbjct: 555 VATDVAARGLDIPHIKTVVNYDVARDIDTHTHRIGRTGRAGEKGTAFTLVTEKDKEFAGH 614

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           + + +E     +   L  L         ++     K   +     G   R +      S 
Sbjct: 615 LVRNLEGANQEVPKSLMDLAMQSAWFRKSRFKGG-KGKSLNIGGAGLGFRGRPNGGSTSQ 673

Query: 420 IPLKESEKISKLQQDIQEND 439
                SE + KL++    +D
Sbjct: 674 ASKDISEVVKKLERHGPGSD 693


>gi|227536058|ref|ZP_03966107.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227243955|gb|EEI93970.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 450

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 154/413 (37%), Positives = 231/413 (55%), Gaps = 6/413 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D   + +++ A+ +AGY  PT IQ K I  VL   D+ GIAQTGTGKTA+FVLPML 
Sbjct: 4   SFEDFKFNKQILNAISEAGYSVPTEIQQKAITPVLAGQDIMGIAQTGTGKTAAFVLPMLM 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+  + +    R LIL PTRELA Q+ ++ + + K  +L   +L GG+  + Q + LE+
Sbjct: 64  KLKYAQGKDM--RALILSPTRELAMQIEEHIQLFSKYLDLRTVVLYGGLGPKTQIENLEK 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR LD +  G + + +++ LV+DEAD+M+DMGFI  I  I  +VP  RQ L
Sbjct: 122 GVDIIVATPGRFLDLYLEGHINVKSLKFLVMDEADKMMDMGFISKIHRILEVVPRKRQNL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM++ ++K++ +FL  P  IEV   ++ A+T++        Q +K   L   L   
Sbjct: 182 LFSATMSELVRKIAGDFLAFPTVIEVTEQATPAKTVQQAVYKVPNQKTKLNLLQHLLKDD 241

Query: 242 QDTMKNGIIFCNQK-KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   +  +    +   + V      +     V  IH N  Q +R+  ++ FKEG I+++V
Sbjct: 242 ESFHRLIVFCKTKTVADNVFHFLERKYGTEQVRVIHANKGQNTRINSINAFKEGNIRILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ +V HV NF+VP   E+Y+HRIGRTGRA   G A T     +  ++  I
Sbjct: 302 ATDVAARGLDVSNVSHVINFEVPIVIEDYVHRIGRTGRAFNEGDAITFSNPAEEYYVRKI 361

Query: 361 EKLIEKKVDWLNGDLSSLNPP---LEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           EKLI + +  L              E+  IA+    +K    P     F  +K
Sbjct: 362 EKLIRQSIPVLEIPEGVFVEKTGFEERQAIAREIDNQKKKDDPDFKGAFHEKK 414


>gi|42781571|ref|NP_978818.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987]
 gi|42737494|gb|AAS41426.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           ATCC 10987]
          Length = 447

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 146/449 (32%), Positives = 239/449 (53%), Gaps = 18/449 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 3   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+ +  +K     +    L I G      Q +KL+
Sbjct: 63  KIDPECSDVQA---LIVAPTRELALQITNEIKKMLVQRDDINVLAIYGGQDVAQQLRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I++ +   T  TIE           +      + + 
Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQIQSEEVTVNTIEQ---RVIETTDRAKPDALRFVM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L   L+ +G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDDLKGRGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE--------KIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           EK +   +     +   +    E            +     R +    +  +   RR  +
Sbjct: 357 EKTLGAPLQREIIEQPKIKHVDENGKPVPKPAPKKSDQYRQRDSREGSRSGSKGGRRNDS 416

Query: 413 YSSQKSHIPL---KESEKISKLQQDIQEN 438
            +S ++       K S K S  +Q  Q  
Sbjct: 417 RNSSRNDSNRSFNKPSNKKSSAKQGQQRR 445


>gi|225181200|ref|ZP_03734646.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
 gi|225168169|gb|EEG76974.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
          Length = 470

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 141/370 (38%), Positives = 216/370 (58%), Gaps = 6/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  +S  V+ AV + G+ + TPIQ + IP  L+  D+ G A TGTGKTA+F +PM+ 
Sbjct: 3   KFNDFAVSENVLQAVSNMGFEEATPIQEQAIPTALKGLDLIGQAHTGTGKTAAFGVPMVE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            LEK  + V+    L++ PTRELA QVA+   K G+   +    + GG     Q + L++
Sbjct: 63  KLEKNGSTVQA---LVVTPTRELAVQVAEELNKIGQYKGIRTLPVYGGQDIGRQIRGLQK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  R  + +  + ++V+DEAD ML+MGFI  I+ I    P  RQTL
Sbjct: 120 RPQIIVGTPGRLLDHIRRRTVRLGQVSMVVLDEADEMLNMGFIEDIEAILQETPQERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +++++  F+++P++I V +   T    E           ++   +   L  
Sbjct: 180 LFSATMPGPIEQLARRFMRDPQKISVRSKEVTVPNTEQ---FHMVMEERQKFDVLCRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             +    I+F   K+ V  L  +L K+G+S   IHG++ Q  R  ++  FK+G+I ++VA
Sbjct: 237 TQSPDLAIVFGRTKRRVDELYEALNKRGYSAEGIHGDMTQARRDSVMRQFKDGSIDILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG  G A T V+  ++ H+  IE
Sbjct: 297 TDVAARGLDITGVTHVYNFDIPQDPESYVHRIGRTGRAGNTGMAVTFVSNREVGHLRTIE 356

Query: 362 KLIEKKVDWL 371
              + ++  L
Sbjct: 357 YGTKSRIPRL 366


>gi|56460652|ref|YP_155933.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
 gi|56179662|gb|AAV82384.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 416

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 170/418 (40%), Positives = 239/418 (57%), Gaps = 16/418 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLS  ++ AV + GY  PTPIQ + IP V+  HD+   AQTGTGKTA F LP+L 
Sbjct: 9   SFQSLGLSDDILRAVTECGYTTPTPIQQQAIPTVMAGHDLLAAAQTGTGKTAGFTLPLLH 68

Query: 62  I-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +       + + LIL PTRELAAQV DN   Y K   L   ++ GG+    Q   L 
Sbjct: 69  KLSQTKTDGKPVIKALILTPTRELAAQVEDNLNTYAKYTGLKSLVIFGGVGINPQISALR 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+LDH  +G + ++ I++L++DEADRMLDMGFI  I+ +  L+P  RQT
Sbjct: 129 RGVDILVATPGRLLDHSRQGTVDLSKIDVLILDEADRMLDMGFIHDIKKVMKLIPEKRQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT + E++ +S+ F+Q PK IEV   ++ A+TI       Y    K+   L   L 
Sbjct: 189 LLFSATFSSEIKALSQQFMQQPKLIEVARQNAAADTI---EQRVYPVDKKRKRELLSYLI 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  ++F   K     L   L   G    AIHGN  Q +R K L+ FK G ++++V
Sbjct: 246 GSRNWRQVLVFTRTKHGANRLATQLTDDGLPAMAIHGNKSQGARTKALAQFKAGKLRVLV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++ HV NF++P  AE+Y+HRIGRTGRAG  G+A +LV  ++ K +  I
Sbjct: 306 ATDIAARGIDIDELPHVINFELPQVAEDYVHRIGRTGRAGSEGEAASLVCVDEHKLLRDI 365

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           EKL + ++            P E I   + + + K  PI +  TG  +  +    QK 
Sbjct: 366 EKLTKNEI------------PREVIPGFEPDPSIKPEPIQKPRTGRPQNSRRAPRQKR 411


>gi|89074254|ref|ZP_01160744.1| putative ATP-dependent RNA helicase, DEAD box family protein
           [Photobacterium sp. SKA34]
 gi|89049958|gb|EAR55492.1| putative ATP-dependent RNA helicase, DEAD box family protein
           [Photobacterium sp. SKA34]
          Length = 427

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 163/432 (37%), Positives = 233/432 (53%), Gaps = 21/432 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L P ++ A+ D GY  PT +Q + IPL L+  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFQSLNLHPNLLKALTDLGYSTPTDVQQQAIPLALKGDDVMAGAQTGTGKTAAFTLPLL 60

Query: 61  TILE--------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
             L                 +      R LIL PTRELA QV D+   Y K   + VA+ 
Sbjct: 61  QRLMTLPSQAEQVSTAVENNQKSRNKIRALILTPTRELAQQVFDSITTYAKYTEIKVAVA 120

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q K L  GA++L+ TPGR+LDH   G + ++ +E  V+DEADRMLDMGFI  
Sbjct: 121 YGGTSMNVQVKALNAGAEILVATPGRLLDHVFNGSVSLSEVETFVLDEADRMLDMGFIVD 180

Query: 167 IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
           IQ I   +P  RQTL FSAT + +++K++ + L NPK +EV   ++ AET+E        
Sbjct: 181 IQRIMKRMPAERQTLFFSATFSKQVKKLAFDILTNPKMVEVTPANTAAETVEQIVYPVDK 240

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
               +       L      +  ++F   K+    L   L   G    +I+G+  Q +R +
Sbjct: 241 HRKAEL---LAYLIGSRNWRQVLVFTKTKQGSDQLAKDLGLDGIKASSINGDKSQGARQR 297

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L +FK G  +++VA+D+AARGLDI  + +V NFD+P +AE+Y+HRIGRTGRAG  G A 
Sbjct: 298 ALDDFKSGKTRVLVATDVAARGLDIEQLEYVVNFDMPFKAEDYVHRIGRTGRAGMTGHAI 357

Query: 347 TLVAKEDIKHIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           TL++ ++   + AIE+L++ ++   WL G     NP L +        A +      KS 
Sbjct: 358 TLMSLDEEWALKAIEELLDSRLPQQWLEGYEP--NPALIETQSVHRGAAAEKRRAKSKSK 415

Query: 405 GFDRRKKNYSSQ 416
               R K+ + +
Sbjct: 416 IHQNRGKHRNRR 427


>gi|212710675|ref|ZP_03318803.1| hypothetical protein PROVALCAL_01741 [Providencia alcalifaciens DSM
           30120]
 gi|212686756|gb|EEB46284.1| hypothetical protein PROVALCAL_01741 [Providencia alcalifaciens DSM
           30120]
          Length = 445

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 142/404 (35%), Positives = 213/404 (52%), Gaps = 11/404 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ A+ + GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP + 
Sbjct: 5   TFSELELDESLITALTNKGYERPTAIQEAAIPAAMDGRDVLGSAPTGTGKTAAFLLPAIQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD  ++   + +L VA + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRVLILTPTRELAMQVADQAKELCAHNHLDVATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +EIL++DEADRMLDMGF   I+ I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVEILILDEADRMLDMGFAHDIETIAGETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT   + ++  +E  L++P  I+        + I+  +        K   L    L
Sbjct: 185 MLFSATLEGEAIRDFAERLLEDPIEIDAEPSRRERKKIQQFYYRADTLEHKTALLC--HL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+ +   I+F  +++ V  +   L   G   C + G + Q  R + +     G ++++
Sbjct: 243 LKQEDVTKSIVFVRKRERVREVVQWLRDAGIEPCYLEGEMVQAKRNEAVRRLVTGQVKVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI +V HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDVASRGLDIENVSHVFNFDLPRTADVYLHRIGRTGRAGRKGTALSLVEAHDFPLLGK 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           I + IE  +     D  SL P          + A  N P P K 
Sbjct: 363 ITRYIEDPIKIRVVD--SLRP-----TTKAPSEAMLNKPKPSKK 399


>gi|134301861|ref|YP_001121830.1| DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049638|gb|ABO46709.1| DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 441

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 151/403 (37%), Positives = 237/403 (58%), Gaps = 8/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+  +  A+   GY KPTPIQ + IP+VL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MKFSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  +  +++   V+DEADRMLDMGFI  ++ I +L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++  FL NP+ +  +  ++T + I                +     
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   ++F   K     +   L   G S  AIHGN  Q +R K L++FK   I ++
Sbjct: 238 IKDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+ N AE+Y+HRIGRTGRAG+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           IE LI   +  + L G  ++ N P+  +  +    A+K + + 
Sbjct: 358 IEHLIGHLLPREELEGFEATHNVPITSM--SHKTKAKKIDEVK 398


>gi|126339554|ref|XP_001367967.1| PREDICTED: similar to DEAD-box protein p72 [Monodelphis domestica]
          Length = 772

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 206/379 (54%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 216 FHHANFPQYVMDVLMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 275

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 276 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 335

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 336 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 395

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL++  +I V     +A       V    +  K   L+Q + +
Sbjct: 396 LMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 455

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 456 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 515

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    
Sbjct: 516 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 575

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E+    +N  L  L
Sbjct: 576 LIKVLEEANQAINPKLMQL 594


>gi|67613960|ref|XP_667337.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           hominis TU502]
 gi|126643927|ref|XP_001388148.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           parvum Iowa II]
 gi|10720033|sp|O02494|IF4A_CRYPV RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A
 gi|2150025|gb|AAB58726.1| translation initiation factor [Cryptosporidium parvum]
 gi|2155304|gb|AAB58799.1| translation initiation factor [Cryptosporidium parvum]
 gi|54658467|gb|EAL37111.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           hominis]
 gi|126117225|gb|EAZ51325.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           parvum Iowa II]
 gi|323508859|dbj|BAJ77322.1| cgd1_880 [Cryptosporidium parvum]
 gi|323510549|dbj|BAJ78168.1| cgd1_880 [Cryptosporidium parvum]
          Length = 405

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 120/376 (31%), Positives = 202/376 (53%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L   ++  +   G+ KP+ IQ + I  +L  +D  G AQ+GTGKTA+FV+  L  
Sbjct: 33  FEALNLEGDLLRGIFAYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQK 92

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++     +   + L+L PTRELA Q+       G    L     +GG        KL+ G
Sbjct: 93  IDYS---LNACQVLLLAPTRELAQQIQKVALALGDYCELRCHACVGGTSVRDDMNKLKSG 149

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ D  ++G L ++N+++ ++DEAD ML  GF   I +I   +P   Q  L
Sbjct: 150 VHMVVGTPGRVFDMLDKGYLRVDNLKLFILDEADEMLSRGFKVQIHDIFKKLPQDVQVAL 209

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E+  ++  F+++PKRI V     T E I   +     +  +        L   
Sbjct: 210 FSATMPNEILHLTTQFMRDPKRILVKQEELTLEGIRQFY--VGVEKDEWKMDTLIDLYET 267

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   II+CN ++ V  L   + ++ F+  ++HG++DQ+ R  I+  F+ G+ ++++ +
Sbjct: 268 LTIVQAIIYCNTRRRVDQLTKQMRERDFTCSSMHGDMDQKDREVIMRQFRSGSSRVLITT 327

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL ARG+D+  V  V N+D+P   E YIHRIGR+GR G+ G +   V  +DI  +  IE+
Sbjct: 328 DLLARGIDVQQVSLVINYDLPVSPETYIHRIGRSGRFGKKGVSINFVTDDDIVCLRDIER 387

Query: 363 LIEKKVDWLNGDLSSL 378
               +++ +   ++ +
Sbjct: 388 HYNTQIEEMPMGITDI 403


>gi|326430346|gb|EGD75916.1| ATP-dependent RNA helicase RhlE [Salpingoeca sp. ATCC 50818]
          Length = 2578

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 136/419 (32%), Positives = 206/419 (49%), Gaps = 2/419 (0%)

Query: 7    GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
            GL   +  A  D GY +PTP+Q   IP  L+  D+ GIA+TG+GKTA+F LP++  L   
Sbjct: 2160 GLEEVLCQACEDVGYRRPTPVQEAAIPPALEGKDIVGIAKTGSGKTAAFALPVMHSLINA 2219

Query: 67   RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
            R R R    L++ PTRELA Q+   F+  G    L  ALL+GG+  + Q  +L +   VL
Sbjct: 2220 RPRERRFHALVMAPTRELAQQIEGEFKALGATIGLKTALLVGGLSLQQQQDRLSQNPHVL 2279

Query: 127  ICTP-GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
            I TP   +          +NN++ L++DEADRML   F   I  +   +P  R   LFSA
Sbjct: 2280 IATPGRILHHLERTNGFKLNNVKFLILDEADRMLTPEFEREIDQLLGHIPKRRTNFLFSA 2339

Query: 186  TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
            T  D+++ +    L+NP  I++     T +T++   V    Q+ +   +     Q     
Sbjct: 2340 TSNDKVKHLMHAVLRNPVHIKIKHKVKTVDTLDQHCVFLPLQFKETYLVWFLQRQGLQAD 2399

Query: 246  KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
             + IIFC  K+  + L   L K G     +HGN+ Q  R+  L+ FK     ++V +++ 
Sbjct: 2400 SSVIIFCETKRATMKLVLMLRKLGLRATCLHGNMSQEKRIGALARFKTHKDNVLVCTNVG 2459

Query: 306  ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
            ARGLDI  V  V N+D+P  ++ Y+HR+GRT RAGR G+A T V + D+ +   IE  + 
Sbjct: 2460 ARGLDIQGVELVINYDLPKTSDVYLHRVGRTARAGRSGRAVTFVTQYDVPYFKEIEAGVG 2519

Query: 366  KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKE 424
              +     D         +ID A     R+   I  ++      K+           K+
Sbjct: 2520 LDLPVRKYD-KECKELYAEIDEASRYATREMKEIEAETRTKRGGKRQAGGGNGRFKKKK 2577


>gi|291221307|ref|XP_002730663.1| PREDICTED: RNA helicase p47-like [Saccoglossus kowalevskii]
          Length = 454

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 115/376 (30%), Positives = 186/376 (49%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L+ +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGKT S+++P+L 
Sbjct: 65  EFEDYCLNRELLMGIFEMGWEKPSPIQEESIPVTLSGRDILARAKNGTGKTGSYLIPILE 124

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + ++L PTRELA Q +   ++  K+    V +  GG   +    +L  
Sbjct: 125 RIDSS---KDYIQAMVLVPTRELALQTSHTCKQLSKHLGARVMVTTGGTNLKDDIMRLYE 181

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD  ++G   M+    L +DEAD++L   F   +    + +P  RQ +
Sbjct: 182 NVHIVIATPGRILDLMDKGVAKMSKCAFLCLDEADKLLSQDFKNMLDRCINFLPNDRQIM 241

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +Q+    F+                T++           K+       L S
Sbjct: 242 LFSATFPLSVQE----FMTRHLNKPYEINLMDELTLKGITQYYAFVQEKQKVHCLNTLFS 297

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+S   IH  + Q  R +I  +F+ G  + +V 
Sbjct: 298 KLQINQSIIFCNSTQRVELLARKITELGYSCFYIHAKMRQEHRNRIFHDFRNGACRNLVC 357

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  IE
Sbjct: 358 SDLFTRGIDIQAVNVVINFDFPKHAETYLHRIGRSGRYGHLGIALNLITYEDRFSLYQIE 417

Query: 362 KLIEKKVDWLNGDLSS 377
           + +  ++  + G +  
Sbjct: 418 RELGTEIKPIPGSIDK 433


>gi|6689612|emb|CAB65518.1| ATP-dependent RNA helicase [Yarrowia lipolytica]
          Length = 523

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 112/375 (29%), Positives = 178/375 (47%), Gaps = 6/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++  + +AG+  P+PIQ + IP+ L   D+   A+ GTGKTA+FV+P L  
Sbjct: 30  FEDFFLKRELLMGIFEAGFENPSPIQEEAIPIALAGRDILARAKNGTGKTAAFVIPALQQ 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +     +V   + LI+ PTRELA Q +   +  GK+  + V +  GG        +LE  
Sbjct: 90  V---NPKVNKIQALIMVPTRELALQTSQVCKTLGKHLGIKVMVTTGGTNLRDDIMRLEDT 146

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             VL+ TPGR+LD   R    ++   + ++DEAD++L   F P I+ +    P+T + +L
Sbjct: 147 VHVLVGTPGRVLDLAGRKVADLSESPMFIMDEADKLLSPDFTPIIEQVLHFFPWTTRQIL 206

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
             +  +       + F+                T+            K+       L S+
Sbjct: 207 VFSATSP---LTVKAFMDRNLHKPYEINLMDELTLRGITQYYAFVDEKQKLHCLNTLFSK 263

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   IIFCN    V  L   + + G+S    H  + Q  R ++   F+ GT + +V S
Sbjct: 264 LDINQSIIFCNSTVRVELLARKITELGYSCYYSHAKMIQSHRNRVFHEFRNGTCRNLVCS 323

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+   D  ++  IE+
Sbjct: 324 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGIAINLINWNDRYNLYKIEQ 383

Query: 363 LIEKKVDWLNGDLSS 377
            +  ++  +   +  
Sbjct: 384 ELGTEIKPIPAQIDK 398


>gi|330932532|ref|XP_003303815.1| hypothetical protein PTT_16176 [Pyrenophora teres f. teres 0-1]
 gi|311319958|gb|EFQ88104.1| hypothetical protein PTT_16176 [Pyrenophora teres f. teres 0-1]
          Length = 512

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 125/416 (30%), Positives = 197/416 (47%), Gaps = 11/416 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 49  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 108

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     + +    LIL PTRELA Q +   ++ GK+ N+ V +  GG   +    +L 
Sbjct: 109 ERVNPKSPKTQ---ALILVPTRELALQTSQVCKQLGKHLNINVMVSTGGTGLKDDIIRLS 165

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +G   ++  +  V+DEAD++L   F P ++ +    P  RQ 
Sbjct: 166 DPVHIIVGTPGRILDLAGKGVADLSACQTFVMDEADKLLSPEFTPVVEQLLGFHPKDRQV 225

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F                 T+            K+       L 
Sbjct: 226 MLFSATFPIVVKS----FKDKHMNSPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 281

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 282 NKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLV 341

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 342 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYRI 401

Query: 361 EKLIEKKVDWLNGDLSS---LNPPLEKIDIAQHNHARK-NNPIPQKSTGFDRRKKN 412
           E+ +  ++  +   +     +    E I     N  R      PQ   G  R   N
Sbjct: 402 EQELGTEIQPIPQVIEKNLYVYESPESIPRPMSNQQRSPGQGQPQDQEGVARGNPN 457


>gi|268680158|ref|YP_003304589.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618189|gb|ACZ12554.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 436

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 158/419 (37%), Positives = 237/419 (56%), Gaps = 13/419 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  +  AV + GY KPTP+Q K IPLVL+  DV   AQTGTGKTA++ LP+L
Sbjct: 1   MVFEKLGLSEPIRDAVRELGYTKPTPVQNKVIPLVLEGKDVMATAQTGTGKTAAYALPLL 60

Query: 61  TILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            IL K   +       R LIL PTRELA+QV  + + YGKN  L+ A + GG+ F  Q K
Sbjct: 61  HILNKKTQKSTTSKVVRALILVPTRELASQVGASVQAYGKNVPLSSAAIYGGVKFTPQAK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL++G D+LI TPGR+L+H   G + ++ +EI+V DEADR+LDMGF   +Q +  L P  
Sbjct: 121 KLDKGIDILIATPGRLLEHVKLGNVDLSRVEIVVFDEADRILDMGFWDEVQTLLGLFPKK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFS  ++  ++++SE  L+ P  + +N     A+ +       Y    ++   L  
Sbjct: 181 RQTLLFSVGLSKSVKRLSEVSLKKPVTVAINNQGDFAKKV---EQTLYLVDKERKCELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         ++F   K++   +   L   G     +HG+     R + +  FKE  I+
Sbjct: 238 FMIGTHNWHQVLVFTKTKQSADEVGEYLNASGLKTLVLHGDKAHSKRTQAIHAFKENAIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A+RGLDI D+ +V N+++P  AE+Y HR GRTGRAG+ G+A +LVA+E+    
Sbjct: 298 VLVATDIASRGLDIEDLPYVINYELPGDAEDYTHRAGRTGRAGKEGRAISLVAQEEKNKF 357

Query: 358 DAIEKLIE--KKVDWLNGDLSS--LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             IEK+++   K ++  G  +   +    +K  I       K N  P    G  ++++ 
Sbjct: 358 KEIEKILKYTIKTEFYPGFETKEWVEKEAKKHTIQAKIDREKANKRPN---GLRKKREE 413


>gi|167644899|ref|YP_001682562.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter sp.
           K31]
 gi|167347329|gb|ABZ70064.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
          Length = 479

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 153/418 (36%), Positives = 237/418 (56%), Gaps = 9/418 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL+  ++ A+ D GY  PTPIQ + IPLV+   D+ GIAQTGTGKTA+F LP+L 
Sbjct: 3   QFTDLGLAKPLLKALTDKGYTVPTPIQAQAIPLVMSGRDLLGIAQTGTGKTAAFALPILH 62

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L + +        R L+L PTRELA Q+A++F  YGK+  LTVA + GG+ +  Q K L
Sbjct: 63  RLAEDKKPAPRRGFRCLVLSPTRELATQIAESFRDYGKHMGLTVATIFGGVKYGPQMKAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DV++ TPGR++DH       +N +EI V+DEAD+MLD+GF+  I+ I S +P  RQ
Sbjct: 123 AAGVDVVVATPGRLMDHLGEKSAHLNGVEIFVLDEADQMLDLGFVVPIRKIASQLPKERQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSATM  E+ K++   L+NP ++ +   ++T E I+   +   AQ  +         
Sbjct: 183 NLFFSATMPSEIGKLAGELLKNPAQVAITPSATTVERIDQSLIFIEAQRKRPLLAELL-- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +  +++  I+F   K+    +   L   G    AIHG+  Q  R + L+ FK G ++ +
Sbjct: 241 -ADKSVERSIVFTRTKRGADRVAKYLVASGIEAAAIHGDKTQGQRERALAAFKAGQVKAL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+ DV HVFN+++PN  E+Y+HRIGRT R G+ G A +  A ++   +  
Sbjct: 300 IATDIAARGIDVNDVSHVFNYELPNVPESYVHRIGRTARKGKEGIAISFCADDERNLLKD 359

Query: 360 IEKLIEKKVDWL----NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           I+K   + +       + +L++     +K+   +     +            RR++N 
Sbjct: 360 IQKATRQTIPTFDRRNDKNLAAAAAVADKLAPPEKYVDPRRADPRNNVPSELRRQRNR 417


>gi|241959442|ref|XP_002422440.1| ATP-dependent rRNA helicase, putative; ribosomal RNA-processing
           protein, putative [Candida dubliniensis CD36]
 gi|223645785|emb|CAX40447.1| ATP-dependent rRNA helicase, putative [Candida dubliniensis CD36]
          Length = 499

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 139/395 (35%), Positives = 219/395 (55%), Gaps = 14/395 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L L P ++ ++    + KPTPIQ + IP  L+  D+ G+AQTG+GKTA+F +P+L 
Sbjct: 87  TFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQ 146

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   +        L+L PTRELA Q+ D F+  G +  L  + ++GG+    Q + L R
Sbjct: 147 SLWHAQQPYF---ALVLAPTRELAFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMR 203

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGRI+DH  +     + N++ LV+DEADR+LDM F P +  I  ++P  R T
Sbjct: 204 KPHIIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRIT 263

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT++++K+    L NP ++ V++   TA+ +    +     Y     +      
Sbjct: 264 YLFSATMTNKIEKLQRASLHNPVKVSVSSKYQTADNLIQSMMLVNDGYKNTILIHLL--- 320

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   K+ I+F     +           GF+   +HG + Q  R+  L+ FK     ++V
Sbjct: 321 NEFIGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILV 380

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V N+D+P  ++ YIHR+GRT RAGR GK+ +L+ + D++    I
Sbjct: 381 ATDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRI 440

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           E ++ KK+   +       PP E +D A H H  K
Sbjct: 441 ENVLGKKLPKED------KPPKEILD-ALHVHVDK 468


>gi|27366679|ref|NP_762206.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|37676391|ref|NP_936787.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|320158571|ref|YP_004190949.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
 gi|27358245|gb|AAO07196.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|37200933|dbj|BAC96757.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|319933883|gb|ADV88746.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
          Length = 418

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 155/423 (36%), Positives = 242/423 (57%), Gaps = 13/423 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL   +   +   G+  PTPIQ + IP +LQ  DV   AQTGTGKTA++ LP++ 
Sbjct: 4   TFIELGLDSSLSDHLSQLGFNTPTPIQQQAIPHLLQGRDVLAAAQTGTGKTAAYGLPLIQ 63

Query: 62  ILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L +        + PR LIL PTRELA QV DN ++Y ++  L +  + GG     Q ++
Sbjct: 64  MLSRQSREETAPKHPRALILAPTRELAQQVFDNLKQYAQHTELAIVTVYGGTSIRVQQEQ 123

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+LI TPGR+LDH    K  +N +++LV+DEADRMLDMGF+P IQ I   +P  R
Sbjct: 124 LAKGVDILIATPGRLLDHLFTKKTSLNQLQMLVLDEADRMLDMGFLPDIQRIMKRMPEER 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    ++ ++   ++ P  ++V   +STA+T+       Y    K+ + L   
Sbjct: 184 QTLLFSATFETRVKALAYRLMKEPVEVQVAAANSTADTV---KQMVYPVDKKRKSELLAY 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L      +  ++F   K+    L   L+  G    +I+G+  Q +R K L +FK G ++ 
Sbjct: 241 LIGSRNWQQVLVFTKTKQGSDALVSELKLDGIKAASINGDKSQGARQKALDDFKSGKVRA 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLDI  +  V NFD+P +AE+Y+HRIGRTGRAG+ G A + +++++   + 
Sbjct: 301 LIATDVAARGLDIAQLEQVVNFDMPYKAEDYVHRIGRTGRAGQTGLAVSFMSRDEEYLLQ 360

Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           AIE L++ ++  +WL G       P EK +  +   +++ +   +K     + K +    
Sbjct: 361 AIENLLDTRLPQEWLAGF-----EPSEKENYVEDTPSKRTSRSAEKRKLKQKLKIHQGRG 415

Query: 417 KSH 419
           K  
Sbjct: 416 KKR 418


>gi|262168988|ref|ZP_06036682.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|262022687|gb|EEY41394.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
          Length = 448

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 125/394 (31%), Positives = 189/394 (47%), Gaps = 6/394 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR LIL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 61  HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG   ++ TPGR+ DH +   L +  +E LV+DEADRMLD+GF   ++ I +     R+
Sbjct: 121 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D             +   +     + E  +         +      L   +
Sbjct: 181 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  IIF   + +   L   L K      A+ GN++Q  R  I+  F+    +++
Sbjct: 241 LADAEYRQVIIFTATRADTDRLTEKLNKNNLKAVALSGNLNQTQRNTIMGQFERAVFKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDIP V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D +    
Sbjct: 301 VTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKR 360

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKIDIA 388
           +E  +++++ +     L G    L P   K   A
Sbjct: 361 VEAFLQQEIQFEVLAGLEGKFKGLKPRQAKPKAA 394


>gi|228952820|ref|ZP_04114890.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228806863|gb|EEM53412.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 458

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 142/415 (34%), Positives = 235/415 (56%), Gaps = 15/415 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ + IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDSESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K  V  L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKLRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           EK +   +     +     P ++++D     + +    +  K +G +R++ +   
Sbjct: 360 EKTLGAPIQREIIE----QPKIKRVD----ENGKPVPKLAPKKSGQNRQRDSREG 406


>gi|227114353|ref|ZP_03828009.1| ATP-dependent RNA helicase RhlB [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 429

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 135/419 (32%), Positives = 210/419 (50%), Gaps = 9/419 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P+V+ A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKTLAFLASTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +   PR LI+ PTRELA Q+  + E       L + L  GG  ++ Q K
Sbjct: 70  YLLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 AQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F +G + 
Sbjct: 249 TLLEEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGNLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG+ G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            AIE  I   +     +    ++ L  P       + N+  + +  P++S      +K 
Sbjct: 369 PAIETYIGHGIPVSKYNSDALMNDLPAPKRLTRPPRSNNGPRRHNAPRRSGAPRNNRKR 427


>gi|217973860|ref|YP_002358611.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217498995|gb|ACK47188.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 451

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 135/445 (30%), Positives = 215/445 (48%), Gaps = 11/445 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F D  L  +++ ++   G  +PT IQ + +P+ L   D+   ++TG+GKT +F+LP +
Sbjct: 1   MQFTDFSLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++       R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRVISTRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +    ++ TPGRI DH  +  L +N +E+LV+DEADRMLD+GF P ++ I       R+
Sbjct: 121 AKEPHFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAADHKRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +              V   ++ +E  +         +      L   L
Sbjct: 181 QTLMFSATLDHYEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDHKEALLARL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +T K  IIF   + +   L   L +QGF+  A+ G++ Q +R +I+  F  G  Q++
Sbjct: 241 LKDETHKQVIIFTATRPDTERLAAKLIEQGFATAALSGDLKQAARNQIMDQFARGQQQVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +   
Sbjct: 301 VTTDVASRGLDLLNVSLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNFKK 360

Query: 360 IEKLIEK-----KVDWLNGDLSSLNPPLEKI---DIAQHNHARKNNPIPQKSTGFDRRKK 411
           ++  + K      +  L    S L    ++     +A+   A+  +   + +T    R K
Sbjct: 361 VQVFLRKTFEISTIPGLEAKFSGLKSKAKQTPAKRVAKAELAKGKSKRTKAATPAPSRDK 420

Query: 412 NYSSQK--SHIPLKESEKISKLQQD 434
            + +       P+++    +KL QD
Sbjct: 421 RFITGVDIGDAPMRKKPAAAKLLQD 445


>gi|88802750|ref|ZP_01118277.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
 gi|88781608|gb|EAR12786.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
          Length = 411

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 153/403 (37%), Positives = 239/403 (59%), Gaps = 10/403 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+D   +  ++ AV +  +  P+ +Q + IPL+L++ +V   AQTGTGKTA+F LP++
Sbjct: 1   MQFSDFSFNKSILKAVAEERFQTPSLVQQEAIPLILEKKNVIVSAQTGTGKTAAFALPII 60

Query: 61  TILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L  G+   +     ++LI+ PTRELA Q+ +NF+ + K  NL  + + GG+  E Q +
Sbjct: 61  QLLFDGQDAEKGEKKIKSLIITPTRELAIQILENFKSFSKYSNLRASAVFGGVSLEPQKE 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +G D+LI TPGR++D   +G + ++ IEI V+DEAD MLDMGFI  I+ I    P  
Sbjct: 121 ILSKGIDILIATPGRLIDLHTQGNIDLSAIEIFVLDEADLMLDMGFINDIKKIERFCPKQ 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTLLFSATM +++ ++++  +++P  +E+N   +TA+ I       Y    K    L  
Sbjct: 181 KQTLLFSATMPEKIVELAKKVIKSPVVVEINPEETTAKNIGQ---LLYYLPKKNKTDLCL 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L         IIF   K  V  L  SL K G+ V +IHG+  Q  R K + +FK  T  
Sbjct: 238 NLLKNTINGKIIIFRRTKFGVDKLEESLTKNGYKVASIHGDKTQGIRNKAIEDFKNKTAH 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RG+DI +V  + NFD+PN  E YIHRIGRTGRAG+ G AF+  + ++  +I
Sbjct: 298 ILIATDVASRGIDITNVDAIINFDIPNVPETYIHRIGRTGRAGKSGIAFSFCSPDENAYI 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKI----DIAQHNHARKN 396
             IE LIE+ +  +   L  ++ P +K      +++H   RK+
Sbjct: 358 KLIETLIERPIKVITDHLYIISKPKQKRTQENTVSKHKKGRKS 400


>gi|172058976|ref|YP_001815436.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171991497|gb|ACB62419.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 481

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 131/400 (32%), Positives = 222/400 (55%), Gaps = 11/400 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS  ++ A+   GY  PT +Q   IP+ L   D+   ++TG+GKTASF +P+  +
Sbjct: 6   FTDFQLSTPILEAIEQLGYHTPTDVQQAVIPVALSEKDIIVKSRTGSGKTASFGIPLCEL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ LIL PTRELA QV ++    G+   +    + G  PF  Q  +L++ 
Sbjct: 66  VEWEENK---PQALILTPTRELALQVTEDVMNIGRYKRIKATAVFGKQPFRGQVAELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  RG L +  ++ LV+DEAD ML+MGF+  +  I   +P  R T+L
Sbjct: 123 THIVVGTPGRVLDHLERGTLSLEKVKYLVLDEADEMLNMGFLDQVDTILKQLPKQRTTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT   ++ ++S+ ++Q+PK++E+ T ++    IEH   +      K    + + +   
Sbjct: 183 FSATFPQDIHQLSDRYMQSPKQVEITTKATEIAEIEH---SYIKVTDKTKFAVLKDVTVV 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     +IFC  K++V  +   L    + V  IHG ++Q  R+ ++  F+ G  + +VA+
Sbjct: 240 ENPDRCMIFCRTKEHVDFVAQGLASMDYPVEKIHGGMEQDERLAVMKAFRAGEFRYLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV  +D+P   E+Y+HR GRTGRAG  GKA +LV + D++ +  +E+
Sbjct: 300 DVAARGIDIENITHVIQYDMPVEKESYVHRTGRTGRAGALGKAISLVTESDMRRLREVEQ 359

Query: 363 LIEKKVDWLNGD-----LSSLNPPLEKIDIAQHNHARKNN 397
              + ++          + + +   EKI  A    ++   
Sbjct: 360 YRGEAIERRQAPTERELIRTADAFEEKITTADVRASKTEQ 399


>gi|260768003|ref|ZP_05876937.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii CIP 102972]
 gi|260616033|gb|EEX41218.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii CIP 102972]
          Length = 540

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 174/464 (37%), Positives = 256/464 (55%), Gaps = 11/464 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ + IP VLQ  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILQAIKEKGYETPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G   R    R LIL PTRELAAQV +    Y ++  L+ A++ GG+    Q  +L
Sbjct: 61  ERLTGGPRVRANQVRALILTPTRELAAQVQECVFTYSRHLPLSSAVVFGGVKINPQMLRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +N+  +  + +E+LV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILELLPKNRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ +++  + +P  I V+  +STA+T+E C         KK A +   L
Sbjct: 181 NLLFSATFSDEIRALAKGLVNDPVEISVSPANSTAKTVEQCVYPADV---KKKAPMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  ++F   K+    L   L ++G    AIHGN  Q +R   L+ FK G ++++
Sbjct: 238 IKDGNWQQVLVFTRTKRGANKLAAFLNEEGIKAAAIHGNKSQGARTTALAEFKSGELRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++PN AE+Y+HRIGRTGRAG  G+A +LV   +   +  
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPNIAEDYVHRIGRTGRAGEAGRAISLVCAVEAPDLFG 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           IE+LI++ +  +  +L    P    P  K+D       +   P      G    +    +
Sbjct: 358 IERLIQQVLPRV--ELDGFKPTNAVPESKLDTRPIKPKKPKKPKKPAVQGERHAQGEKPA 415

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRG 459
            +   P + +   SK  +  +     +     + P     K R 
Sbjct: 416 SQGRKPNQNAGGKSKPSRQGEARQGRAPAK-NDQPEGATSKPRS 458


>gi|163839675|ref|YP_001624080.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
 gi|162953151|gb|ABY22666.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
          Length = 652

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 135/371 (36%), Positives = 216/371 (58%), Gaps = 5/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL  +V+ A+ D GY KP+PIQ  TIP++L+  DV G+AQTGTGKTA+F LP L+ 
Sbjct: 46  FTDFGLDGRVLAALKDVGYEKPSPIQAATIPVLLEGRDVVGLAQTGTGKTAAFALPALSR 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKLER 121
           +       +  + L+L PTRELA QVA+ F  Y  + +    L + G   +  Q   L R
Sbjct: 106 M-ANLPATKDTQILVLAPTRELALQVAEAFSSYAAHMDNFSVLPVYGGSAYGPQLAGLRR 164

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH ++G L ++N++ LV+DEAD ML MGF   ++ I +  P  +Q  
Sbjct: 165 GAQVVVGTPGRVIDHLSKGSLDLSNLQYLVLDEADEMLRMGFADDVEQILAETPEDKQVA 224

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  +++++++ +L NP  I V   ++T E     ++     +          ++ 
Sbjct: 225 LFSATMPGQIRRIAKKYLNNPAEISVKAKTTTGENTRQRYLQVMGPHKLDAMTRILEVED 284

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D +   +      + + +   S   +G+   AI+G+I Q+ R + +   + G+I ++VA
Sbjct: 285 YDGVIAFVRTKMATEELADKLKS---RGYRAAAINGDIPQQQRERTVEALRSGSIDVLVA 341

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D+P+  E+Y+HRIGRTGRAGR G A   +   +   + AIE
Sbjct: 342 TDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRAIE 401

Query: 362 KLIEKKVDWLN 372
           K   + V+ ++
Sbjct: 402 KATRQPVEQMH 412


>gi|257452688|ref|ZP_05617987.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_5R]
 gi|317059228|ref|ZP_07923713.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_5R]
 gi|313684904|gb|EFS21739.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_5R]
          Length = 528

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 127/368 (34%), Positives = 206/368 (55%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F +LG+  K++ A+   GY  PTPIQ  TIP +L    D+ G AQTGTGKTA+F LP+L
Sbjct: 9   EFRELGIGEKLLKALSKKGYETPTPIQSLTIPALLTGEKDIIGQAQTGTGKTAAFALPIL 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +E         + ++L PTRELA QVA+     G +  + +  + GG   + Q K L 
Sbjct: 69  ENIEHQDK----IQGIVLTPTRELALQVAEEMNSLGSSKKIKIIPVYGGQSIDIQRKLLR 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+++ TPGR++D   R  L + +++  ++DEAD ML+MGF+  ++ I       ++ 
Sbjct: 125 NGADIIVGTPGRVIDFIERKFLRLQDLKYFILDEADEMLNMGFLEEVEKILEATNEDKRM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+ KV++  +++ + + V     T +         +    +        + 
Sbjct: 185 LFFSATMPSEILKVAKKHMKDYEILAVKARELTTDLT---DQIYFEVNERDKFEALCRII 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  GI+FC  K +V  +   L  +G+    +HG+I Q  R   L  FK   I ++V
Sbjct: 242 DLAEDFYGIVFCRTKTDVNEVVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKAKKINILV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV N+ +P  AE+Y+HRIGRTGRAG+ G A T +  ++ + +  I
Sbjct: 302 ATDVAARGIDVNDLSHVINYAIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 361

Query: 361 EKLIEKKV 368
           +K+++ ++
Sbjct: 362 QKIVKTEI 369


>gi|297521198|ref|ZP_06939584.1| ATP-dependent RNA helicase RhlB [Escherichia coli OP50]
          Length = 425

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 138/413 (33%), Positives = 207/413 (50%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 14  KFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 73

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 74  YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK 133

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 134 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 193

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 194 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 252

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 253 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 312

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 313 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 372

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 373 PAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGAPRNRRRSG 425


>gi|293468098|ref|ZP_06664510.1| ATP-dependent RNA helicase rhlB [Escherichia coli B088]
 gi|291321476|gb|EFE60914.1| ATP-dependent RNA helicase rhlB [Escherichia coli B088]
          Length = 427

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 138/413 (33%), Positives = 207/413 (50%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 16  KFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 75

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 76  YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK 135

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 136 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 195

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 196 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 254

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 255 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 314

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 315 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 374

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 375 PAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGAPRNRRRSG 427


>gi|218707416|ref|YP_002414935.1| ATP-dependent RNA helicase RhlB [Escherichia coli UMN026]
 gi|293407410|ref|ZP_06651330.1| ATP-dependent RNA helicase RhlB [Escherichia coli FVEC1412]
 gi|298383150|ref|ZP_06992744.1| ATP-dependent RNA helicase RhlB [Escherichia coli FVEC1302]
 gi|300900676|ref|ZP_07118829.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|226739535|sp|B7NF85|RHLB_ECOLU RecName: Full=ATP-dependent RNA helicase rhlB
 gi|218434513|emb|CAR15440.1| ATP-dependent RNA helicase [Escherichia coli UMN026]
 gi|291425521|gb|EFE98559.1| ATP-dependent RNA helicase RhlB [Escherichia coli FVEC1412]
 gi|298276386|gb|EFI17905.1| ATP-dependent RNA helicase RhlB [Escherichia coli FVEC1302]
 gi|300355825|gb|EFJ71695.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
          Length = 421

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 138/413 (33%), Positives = 207/413 (50%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGTPRNRRRSG 421


>gi|170744521|ref|YP_001773176.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168198795|gb|ACA20742.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
          Length = 499

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 154/451 (34%), Positives = 243/451 (53%), Gaps = 8/451 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL+  ++ A+ + GYV PTPIQ + +P  +   D+CGIAQTGTGKTA+F LP+L 
Sbjct: 3   QFVDFGLAAPILKALAETGYVTPTPIQAQAVPQAMAGRDLCGIAQTGTGKTAAFALPILH 62

Query: 62  ILEKGRARVRMPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L     + R PR         PTRELA+Q+A++F  YGK    +  ++ GG+    Q +
Sbjct: 63  RLASETPQRRAPRRGCRVLVLSPTRELASQIAESFGDYGKFLPFSTTVVFGGVTIGRQER 122

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+L+ TPGR+LD  +R  L ++ +E LV+DEAD+MLD+GFI  ++ I +L+P  
Sbjct: 123 ALANGVDILVATPGRLLDLIDRRSLSLDAVEYLVLDEADQMLDLGFIHALKRIVTLLPKA 182

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+L FSATM   +  ++  +L++P ++ V   ++TAE +E   V       +       
Sbjct: 183 RQSLFFSATMPRNIATLAAQYLRDPVQVAVTPVATTAERVEQRVVHVPTGAKQAL---LA 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +    ++   ++F   K     +   LEK G    AIHGN  Q  R + L+ F+ G  +
Sbjct: 240 TILRDASIDRVLVFTRTKHGADRVVRGLEKAGIGSAAIHGNKSQPQRERALAAFRAGICR 299

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+  V HV NFD+PN  E Y+HRIGRT RAG  G A +    E+  ++
Sbjct: 300 VLVATDIAARGIDVEGVSHVVNFDLPNVPEAYVHRIGRTARAGADGLAISFCNDEERAYL 359

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKSTGFDRRKKNYSSQ 416
             IE+L  +KV  +      + P  ++  +A+    R +  P P+       +       
Sbjct: 360 RDIERLTRQKVPEMAIPEGFVPPSRQEAAVAEAEAERDRRQPGPRGQRPGRPQGGRPPQT 419

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRG 447
           +   P +   + ++  QD ++   +  G   
Sbjct: 420 QGGRPAEARPRPARQGQDGRQARTNQDGRPA 450


>gi|16131636|ref|NP_418227.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24115073|ref|NP_709583.1| ATP-dependent RNA helicase RhlB [Shigella flexneri 2a str. 301]
 gi|26250518|ref|NP_756558.1| ATP-dependent RNA helicase RhlB [Escherichia coli CFT073]
 gi|30064925|ref|NP_839096.1| ATP-dependent RNA helicase RhlB [Shigella flexneri 2a str. 2457T]
 gi|74314294|ref|YP_312713.1| ATP-dependent RNA helicase RhlB [Shigella sonnei Ss046]
 gi|89110237|ref|AP_004017.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           W3110]
 gi|91213300|ref|YP_543286.1| ATP-dependent RNA helicase RhlB [Escherichia coli UTI89]
 gi|110644107|ref|YP_671837.1| ATP-dependent RNA helicase RhlB [Escherichia coli 536]
 gi|117626041|ref|YP_859364.1| ATP-dependent RNA helicase RhlB [Escherichia coli APEC O1]
 gi|157156932|ref|YP_001465261.1| ATP-dependent RNA helicase RhlB [Escherichia coli E24377A]
 gi|157163253|ref|YP_001460571.1| ATP-dependent RNA helicase RhlB [Escherichia coli HS]
 gi|170022193|ref|YP_001727147.1| ATP-dependent RNA helicase RhlB [Escherichia coli ATCC 8739]
 gi|170083267|ref|YP_001732587.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188493269|ref|ZP_03000539.1| ATP-dependent RNA helicase RhlB [Escherichia coli 53638]
 gi|191166123|ref|ZP_03027958.1| ATP-dependent RNA helicase RhlB [Escherichia coli B7A]
 gi|191174380|ref|ZP_03035885.1| ATP-dependent RNA helicase RhlB [Escherichia coli F11]
 gi|193066115|ref|ZP_03047170.1| ATP-dependent RNA helicase RhlB [Escherichia coli E22]
 gi|194429768|ref|ZP_03062283.1| ATP-dependent RNA helicase RhlB [Escherichia coli B171]
 gi|194438673|ref|ZP_03070761.1| ATP-dependent RNA helicase RhlB [Escherichia coli 101-1]
 gi|209921253|ref|YP_002295337.1| ATP-dependent RNA helicase RhlB [Escherichia coli SE11]
 gi|215489108|ref|YP_002331539.1| ATP-dependent RNA helicase RhlB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218556342|ref|YP_002389256.1| ATP-dependent RNA helicase RhlB [Escherichia coli IAI1]
 gi|218560846|ref|YP_002393759.1| ATP-dependent RNA helicase RhlB [Escherichia coli S88]
 gi|218692059|ref|YP_002400271.1| ATP-dependent RNA helicase RhlB [Escherichia coli ED1a]
 gi|218697497|ref|YP_002405164.1| ATP-dependent RNA helicase RhlB [Escherichia coli 55989]
 gi|227888637|ref|ZP_04006442.1| ATP-dependent RNA helicase [Escherichia coli 83972]
 gi|237702790|ref|ZP_04533271.1| ATP-dependent RNA helicase rhlB [Escherichia sp. 3_2_53FAA]
 gi|238902861|ref|YP_002928657.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|253775595|ref|YP_003038426.1| ATP-dependent RNA helicase RhlB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038992|ref|ZP_04873043.1| ATP-dependent RNA helicase rhlB [Escherichia sp. 1_1_43]
 gi|254163724|ref|YP_003046832.1| ATP-dependent RNA helicase RhlB [Escherichia coli B str. REL606]
 gi|256021478|ref|ZP_05435343.1| ATP-dependent RNA helicase RhlB [Shigella sp. D9]
 gi|256026128|ref|ZP_05439993.1| ATP-dependent RNA helicase RhlB [Escherichia sp. 4_1_40B]
 gi|260846444|ref|YP_003224222.1| ATP-dependent RNA helicase RhlB [Escherichia coli O103:H2 str.
           12009]
 gi|293417246|ref|ZP_06659871.1| ATP-dependent RNA helicase RhlB [Escherichia coli B185]
 gi|300818751|ref|ZP_07098958.1| DEAD/DEAH box helicase [Escherichia coli MS 107-1]
 gi|300823311|ref|ZP_07103442.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300904031|ref|ZP_07121913.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|300921514|ref|ZP_07137858.1| DEAD/DEAH box helicase [Escherichia coli MS 115-1]
 gi|300923279|ref|ZP_07139328.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|300930057|ref|ZP_07145487.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|300947363|ref|ZP_07161559.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300955218|ref|ZP_07167613.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|300979308|ref|ZP_07174492.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|300985808|ref|ZP_07177600.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|301021429|ref|ZP_07185453.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
 gi|301028992|ref|ZP_07192149.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|301047340|ref|ZP_07194425.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|301303674|ref|ZP_07209795.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|301325469|ref|ZP_07218952.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
 gi|301646155|ref|ZP_07246054.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|306815182|ref|ZP_07449335.1| ATP-dependent RNA helicase RhlB [Escherichia coli NC101]
 gi|307140480|ref|ZP_07499836.1| ATP-dependent RNA helicase RhlB [Escherichia coli H736]
 gi|307313643|ref|ZP_07593263.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|309796280|ref|ZP_07690690.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|312971937|ref|ZP_07786111.1| ATP-dependent RNA helicase rhlB [Escherichia coli 1827-70]
 gi|331644514|ref|ZP_08345634.1| ATP-dependent RNA helicase RhlB [Escherichia coli H736]
 gi|331649605|ref|ZP_08350687.1| ATP-dependent RNA helicase RhlB [Escherichia coli M605]
 gi|331660125|ref|ZP_08361061.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA206]
 gi|331665426|ref|ZP_08366325.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA143]
 gi|331670625|ref|ZP_08371462.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA271]
 gi|331679889|ref|ZP_08380552.1| ATP-dependent RNA helicase RhlB [Escherichia coli H591]
 gi|332282712|ref|ZP_08395125.1| ATP-dependent RNA helicase rhlB [Shigella sp. D9]
 gi|67472034|sp|P0A8J8|RHLB_ECOLI RecName: Full=ATP-dependent RNA helicase rhlB
 gi|67472035|sp|P0A8J9|RHLB_ECOL6 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|67472036|sp|P0A8K0|RHLB_SHIFL RecName: Full=ATP-dependent RNA helicase rhlB
 gi|122421788|sp|Q1R4F9|RHLB_ECOUT RecName: Full=ATP-dependent RNA helicase rhlB
 gi|123147496|sp|Q0TAU3|RHLB_ECOL5 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|123615737|sp|Q3YVI4|RHLB_SHISS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040027|sp|B1IWC0|RHLB_ECOLC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040118|sp|A1AHV0|RHLB_ECOK1 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040119|sp|A8A6N4|RHLB_ECOHS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040120|sp|A7ZTY2|RHLB_ECO24 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739530|sp|B7MGJ1|RHLB_ECO45 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739533|sp|B7M5C7|RHLB_ECO8A RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739534|sp|B1X9Z4|RHLB_ECODH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739536|sp|B6I4B6|RHLB_ECOSE RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797687|sp|B7UMN5|RHLB_ECO27 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797688|sp|B7L8B6|RHLB_ECO55 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797689|sp|B7MR01|RHLB_ECO81 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|259585613|sp|C4ZZ48|RHLB_ECOBW RecName: Full=ATP-dependent RNA helicase rhlB
 gi|26110948|gb|AAN83132.1|AE016769_247 Putative ATP-dependent RNA helicase rhlB [Escherichia coli CFT073]
 gi|1790214|gb|AAC76785.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24054339|gb|AAN45290.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str. 301]
 gi|30043186|gb|AAP18907.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str.
           2457T]
 gi|73857771|gb|AAZ90478.1| putative ATP-dependent RNA helicase [Shigella sonnei Ss046]
 gi|85676268|dbj|BAE77518.1| ATP-dependent RNA helicase [Escherichia coli str. K12 substr.
           W3110]
 gi|91074874|gb|ABE09755.1| putative ATP-dependent RNA helicase [Escherichia coli UTI89]
 gi|110345699|gb|ABG71936.1| putative ATP-dependent RNA helicase RhlB [Escherichia coli 536]
 gi|115515165|gb|ABJ03240.1| ATP-dependent RNA helicase [Escherichia coli APEC O1]
 gi|157068933|gb|ABV08188.1| ATP-dependent RNA helicase RhlB [Escherichia coli HS]
 gi|157078962|gb|ABV18670.1| ATP-dependent RNA helicase RhlB [Escherichia coli E24377A]
 gi|169757121|gb|ACA79820.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
 gi|169891102|gb|ACB04809.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188488468|gb|EDU63571.1| ATP-dependent RNA helicase RhlB [Escherichia coli 53638]
 gi|190903899|gb|EDV63613.1| ATP-dependent RNA helicase RhlB [Escherichia coli B7A]
 gi|190905357|gb|EDV64991.1| ATP-dependent RNA helicase RhlB [Escherichia coli F11]
 gi|192926212|gb|EDV80851.1| ATP-dependent RNA helicase RhlB [Escherichia coli E22]
 gi|194412180|gb|EDX28487.1| ATP-dependent RNA helicase RhlB [Escherichia coli B171]
 gi|194422477|gb|EDX38476.1| ATP-dependent RNA helicase RhlB [Escherichia coli 101-1]
 gi|209914512|dbj|BAG79586.1| RNA helicase [Escherichia coli SE11]
 gi|215267180|emb|CAS11628.1| ATP-dependent RNA helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|218354229|emb|CAV00884.1| ATP-dependent RNA helicase [Escherichia coli 55989]
 gi|218363111|emb|CAR00751.1| ATP-dependent RNA helicase [Escherichia coli IAI1]
 gi|218367615|emb|CAR05399.1| ATP-dependent RNA helicase [Escherichia coli S88]
 gi|218429623|emb|CAR10584.2| ATP-dependent RNA helicase [Escherichia coli ED1a]
 gi|222035482|emb|CAP78227.1| ATP-dependent RNA helicase rhlB [Escherichia coli LF82]
 gi|226838683|gb|EEH70711.1| ATP-dependent RNA helicase rhlB [Escherichia sp. 1_1_43]
 gi|226902961|gb|EEH89220.1| ATP-dependent RNA helicase rhlB [Escherichia sp. 3_2_53FAA]
 gi|227834476|gb|EEJ44942.1| ATP-dependent RNA helicase [Escherichia coli 83972]
 gi|238860046|gb|ACR62044.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|242379313|emb|CAQ34124.1| RhlB, subunit of RhlB, ATP-dependent RNA helicase of the RNA
           degradosome and degradosome [Escherichia coli BL21(DE3)]
 gi|253326639|gb|ACT31241.1| DEAD/DEAH box helicase domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975625|gb|ACT41296.1| ATP-dependent RNA helicase [Escherichia coli B str. REL606]
 gi|253979781|gb|ACT45451.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
 gi|257761591|dbj|BAI33088.1| ATP-dependent RNA helicase RhlB [Escherichia coli O103:H2 str.
           12009]
 gi|260451375|gb|ACX41797.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
 gi|281180829|dbj|BAI57159.1| RNA helicase [Escherichia coli SE15]
 gi|281603170|gb|ADA76154.1| putative Superfamily II DNA and RNA helicase [Shigella flexneri
           2002017]
 gi|284923885|emb|CBG36984.1| ATP-dependent RNA helicase [Escherichia coli 042]
 gi|291431014|gb|EFF04009.1| ATP-dependent RNA helicase RhlB [Escherichia coli B185]
 gi|294489863|gb|ADE88619.1| ATP-dependent RNA helicase RhlB [Escherichia coli IHE3034]
 gi|299878035|gb|EFI86246.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|300300757|gb|EFJ57142.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|300308061|gb|EFJ62581.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|300317872|gb|EFJ67656.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|300398065|gb|EFJ81603.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
 gi|300403983|gb|EFJ87521.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|300407959|gb|EFJ91497.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|300411582|gb|EFJ94892.1| DEAD/DEAH box helicase [Escherichia coli MS 115-1]
 gi|300420424|gb|EFK03735.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|300453025|gb|EFK16645.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300462045|gb|EFK25538.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|300524097|gb|EFK45166.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300528717|gb|EFK49779.1| DEAD/DEAH box helicase [Escherichia coli MS 107-1]
 gi|300840974|gb|EFK68734.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|300847696|gb|EFK75456.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
 gi|301075624|gb|EFK90430.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|305851551|gb|EFM52005.1| ATP-dependent RNA helicase RhlB [Escherichia coli NC101]
 gi|306906624|gb|EFN37136.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|307555908|gb|ADN48683.1| putative ATP-dependent RNA helicase [Escherichia coli ABU 83972]
 gi|307628843|gb|ADN73147.1| ATP-dependent RNA helicase RhlB [Escherichia coli UM146]
 gi|308120162|gb|EFO57424.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|309704219|emb|CBJ03566.1| ATP-dependent RNA helicase [Escherichia coli ETEC H10407]
 gi|310334314|gb|EFQ00519.1| ATP-dependent RNA helicase rhlB [Escherichia coli 1827-70]
 gi|312948335|gb|ADR29162.1| ATP-dependent RNA helicase RhlB [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313647775|gb|EFS12222.1| ATP-dependent RNA helicase rhlB [Shigella flexneri 2a str. 2457T]
 gi|315063076|gb|ADT77403.1| ATP-dependent RNA helicase [Escherichia coli W]
 gi|315138358|dbj|BAJ45517.1| ATP-dependent RNA helicase rhlB [Escherichia coli DH1]
 gi|315254144|gb|EFU34112.1| DEAD/DEAH box helicase [Escherichia coli MS 85-1]
 gi|315284670|gb|EFU44115.1| DEAD/DEAH box helicase [Escherichia coli MS 110-3]
 gi|315293136|gb|EFU52488.1| DEAD/DEAH box helicase [Escherichia coli MS 153-1]
 gi|315296843|gb|EFU56132.1| DEAD/DEAH box helicase [Escherichia coli MS 16-3]
 gi|315618521|gb|EFU99107.1| ATP-dependent RNA helicase rhlB [Escherichia coli 3431]
 gi|320197592|gb|EFW72204.1| ATP-dependent RNA helicase RhlB [Escherichia coli WV_060327]
 gi|320198512|gb|EFW73113.1| ATP-dependent RNA helicase RhlB [Escherichia coli EC4100B]
 gi|323161156|gb|EFZ47074.1| ATP-dependent RNA helicase rhlB [Escherichia coli E128010]
 gi|323173397|gb|EFZ59026.1| ATP-dependent RNA helicase rhlB [Escherichia coli LT-68]
 gi|323182553|gb|EFZ67957.1| ATP-dependent RNA helicase rhlB [Escherichia coli 1357]
 gi|323189497|gb|EFZ74777.1| ATP-dependent RNA helicase rhlB [Escherichia coli RN587/1]
 gi|323380861|gb|ADX53129.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11]
 gi|323934171|gb|EGB30602.1| DEAD/DEAH box helicase [Escherichia coli E1520]
 gi|323943817|gb|EGB39912.1| DEAD/DEAH box helicase [Escherichia coli H120]
 gi|323949335|gb|EGB45225.1| DEAD/DEAH box helicase [Escherichia coli H252]
 gi|323954095|gb|EGB49892.1| DEAD/DEAH box helicase [Escherichia coli H263]
 gi|323959037|gb|EGB54706.1| DEAD/DEAH box helicase [Escherichia coli H489]
 gi|323969378|gb|EGB64677.1| DEAD/DEAH box helicase [Escherichia coli TA007]
 gi|324007445|gb|EGB76664.1| DEAD/DEAH box helicase [Escherichia coli MS 57-2]
 gi|324014725|gb|EGB83944.1| DEAD/DEAH box helicase [Escherichia coli MS 60-1]
 gi|324016171|gb|EGB85390.1| DEAD/DEAH box helicase [Escherichia coli MS 117-3]
 gi|324115756|gb|EGC09691.1| DEAD/DEAH box helicase [Escherichia coli E1167]
 gi|330908082|gb|EGH36601.1| ATP-dependent RNA helicase RhlB [Escherichia coli AA86]
 gi|331036186|gb|EGI08421.1| ATP-dependent RNA helicase RhlB [Escherichia coli H736]
 gi|331041475|gb|EGI13623.1| ATP-dependent RNA helicase RhlB [Escherichia coli M605]
 gi|331052693|gb|EGI24728.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA206]
 gi|331057324|gb|EGI29313.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA143]
 gi|331062098|gb|EGI34020.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA271]
 gi|331072436|gb|EGI43768.1| ATP-dependent RNA helicase RhlB [Escherichia coli H591]
 gi|332105064|gb|EGJ08410.1| ATP-dependent RNA helicase rhlB [Shigella sp. D9]
 gi|332345760|gb|AEE59094.1| ATP-dependent RNA helicase RhlB [Escherichia coli UMNK88]
 gi|332751084|gb|EGJ81488.1| ATP-dependent RNA helicase rhlB [Shigella flexneri K-671]
 gi|332996857|gb|EGK16477.1| ATP-dependent RNA helicase rhlB [Shigella flexneri VA-6]
 gi|333013582|gb|EGK32949.1| ATP-dependent RNA helicase rhlB [Shigella flexneri K-304]
          Length = 421

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 138/413 (33%), Positives = 207/413 (50%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGAPRNRRRSG 421


>gi|251787806|ref|YP_003002527.1| ATP-dependent RNA helicase RhlB [Dickeya zeae Ech1591]
 gi|247536427|gb|ACT05048.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
          Length = 428

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 135/418 (32%), Positives = 210/418 (50%), Gaps = 8/418 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P+V+ A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPQVIEALEKKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +   PR LI+ PTRELA Q+  + E   K   L + L  GG  ++ Q K
Sbjct: 70  YLLTHPASSERQTNQPRALIMAPTRELAVQIHTDAEALAKATGLRLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + M  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLEDGVDILIGTTGRLIDYTKQNHVNMGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G + 
Sbjct: 249 TLIEEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTQGNLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGASGCSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            AIE     ++        +L    P  +++   + +   +    P++S      +K 
Sbjct: 369 PAIEDYTGHRIPVSKYRSEALLTDLPEPKRLSRPRTSGGPRRPGAPRRSGAPRNNRKR 426


>gi|242003922|ref|XP_002422909.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212505802|gb|EEB10171.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 458

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 137/450 (30%), Positives = 229/450 (50%), Gaps = 28/450 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLG+   +        +  PT IQ + IPL LQ  DV G+A+TG+GKT +F LP+L
Sbjct: 22  VTFKDLGIVDVLCQTCESLKWKAPTKIQKEAIPLTLQGRDVIGLAETGSGKTGAFALPIL 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-L 119
             L +   R      LIL PTRELA Q+++ F+  G    +  A+++GG+   +Q     
Sbjct: 82  QALLQNPQRYFA---LILTPTRELAFQISEQFQALGSKIGVKTAVIVGGMDMMSQALLLA 138

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   ++      +    N     +  ++ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 139 KKPHVIIATPGRLVDHLENTKGFNLKALKFLVMDEADRILNMDFEVEVDKILKVIPRERR 198

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATMT ++QK+    L +P ++EV++   T + ++  ++       K   +    +
Sbjct: 199 TLLFSATMTQKVQKLQRASLHDPVKVEVSSKYQTVDKLQQYYLFIPV---KFKDVYLVSI 255

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      +IFC    N +     L + GF+   +HG + Q  R+  L+ F+     ++
Sbjct: 256 INEMAGNTFMIFCGTCHNTLRTALLLRQLGFTAIPLHGQMSQNKRLGALTKFRAKNRSIL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    
Sbjct: 316 ISTDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQR 375

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+LI KK+     +   +    E++  AQ                     +N   +  H
Sbjct: 376 IEQLIGKKLPLFKIEEDEVMTLQERVAEAQ---------------------RNSKMEMKH 414

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNM 449
           I   + +K  K + D  ++  +S G R  +
Sbjct: 415 ISEMKGKKGIKRKTDDNDDTEESRGVRKRL 444


>gi|148229654|ref|NP_001084230.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus laevis]
 gi|8163810|gb|AAF73861.1|AF218580_1 p68 RNA helicase [Xenopus laevis]
          Length = 608

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 137/411 (33%), Positives = 219/411 (53%), Gaps = 3/411 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           ++F +      V+ A+    + +PTPIQ +  P+ L   D+ G+A TG+GKT S++LP  
Sbjct: 92  LNFNEASFPANVMEAIKRQNFTEPTPIQGQGWPVALSGLDMVGVAMTGSGKTLSYLLPGI 151

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +    +    R   P  L+L PTRELA QV     +YG+   L    + GG P   Q + 
Sbjct: 152 VHINHQPFLQRGDGPILLVLAPTRELAQQVQQVAAEYGRACRLRSTCIYGGAPKGPQIRD 211

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +N    LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 212 LERGVEICIATPGRLIDFLEAGKTNLNRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 271

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 272 QTLMWSATWPKEVRQLAEDFLRDYVHINIGALELSANHNILQIVDVCNDGEKDDKLVRLM 331

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+   +L   L + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 332 EEIMSEKENKTIVFVETKRRCDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFKHGKSP 391

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 392 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSSKTGTAYTFFTPGNIKQV 451

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           + +  ++ +    +N +L  L     +       + R++     K  G+DR
Sbjct: 452 NDLISVLREANQAINPNLLQLVEDRGRFRGRGGMNDRRDRFSSGKRGGWDR 502


>gi|319399568|gb|EFV87823.1| DEAD/DEAH box helicase family protein [Staphylococcus epidermidis
           FRI909]
          Length = 509

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 147/463 (31%), Positives = 233/463 (50%), Gaps = 23/463 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S K V  +   G+ +PTPIQ  +IP  L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +  ++LIL PTRELA QVA+   ++ K   + V  + GG+P E Q K L++
Sbjct: 63  KVVGQ----QGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L    I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     +     +  K           
Sbjct: 179 MLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFT--NFLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 237 VHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 297 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
                  D  N  + +L PP  K    +   AR+++   +      R  +    + S   
Sbjct: 357 -------DVNNRRMKALRPPHRK----EVLKAREDDIKERVQNWMSRENEPRLQRISSEL 405

Query: 422 LKESE----KISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
           LKE +      S LQ+ ++ ND   +      P  +  KNR  
Sbjct: 406 LKEYDSTELVASLLQELVEANDEVEVQLTFEKP--LARKNRSS 446


>gi|261345270|ref|ZP_05972914.1| ATP-dependent RNA helicase RhlB [Providencia rustigianii DSM 4541]
 gi|282566969|gb|EFB72504.1| ATP-dependent RNA helicase RhlB [Providencia rustigianii DSM 4541]
          Length = 428

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 135/412 (32%), Positives = 214/412 (51%), Gaps = 10/412 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKV+ A+   G+   TPIQ  T+P  ++  DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVIEALNKKGFNFCTPIQAATLPFTVEGKDVAGQAQTGTGKTLAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +   PR LI+ PTRELA Q+  + ++  +   L + L  GG  ++ Q K
Sbjct: 70  FLLTHPAMDGKKTNQPRALIMAPTRELAVQIYSDSKELAEYTGLKMGLAYGGDGYDEQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G D+L+ T GR++D+  +G + +  I+++V+DEADRM D+GFI  I+ I   +P  
Sbjct: 130 VLQNGVDILVGTTGRLIDYAKQGHVDLTAIQVVVLDEADRMYDLGFIKDIRWIFRRMPSA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
              L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 190 ADRLNLLFSATLSYRVRELAFEQMNNPEYIEVEPLQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++  +  IIF N K    ++   L   G  V  + G++ Q+ R++IL  F +G I 
Sbjct: 249 TLLEEEWPERCIIFANTKHRCDDIWAHLAADGHRVGLLTGDVAQKKRLRILEQFTQGHID 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGNSISLACEEYSLNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            AIE+ I+  +     +    LS L  P  +    +    R+N+  P++  G
Sbjct: 369 PAIEEYIQHSIPVSKYNSEALLSELPAPKRRHR-PRPTGPRRNSNAPRRHNG 419


>gi|238755161|ref|ZP_04616507.1| DEAD/DEAH box helicase domain protein [Yersinia ruckeri ATCC 29473]
 gi|238706608|gb|EEP98979.1| DEAD/DEAH box helicase domain protein [Yersinia ruckeri ATCC 29473]
          Length = 656

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 137/371 (36%), Positives = 229/371 (61%), Gaps = 6/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS  ++ A+ D GY KP+PIQ++ IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 8   SFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLH 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     ++ P+ L+L PTRELA QVA+    + K+ +    + +  G  ++ Q + L 
Sbjct: 68  NIDPT---LKAPQVLVLAPTRELAVQVAEALSSFSKHISGVNVVALYGGQRYDVQLRALR 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 125 QGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F+++P+ + + + ++T   I   +      Y K  AL++    
Sbjct: 185 ALFSATMPEAIRRITRRFMKDPQEVRIQSSNTTRPDISQSYWKVGGGYRKNEALVR--FL 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G+S  A++G+++Q  R + L   ++G + +++
Sbjct: 243 ESEDFDAAIIFVRTKNATLEVAETLERSGYSSAALNGDMNQSLREQTLERLRDGRLDILI 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 303 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNI 362

Query: 361 EKLIEKKVDWL 371
           E+ ++  +  +
Sbjct: 363 ERTMKLTIPEV 373


>gi|162462542|ref|NP_001104874.1| translation initiation factor [Zea mays]
 gi|2286151|gb|AAB64289.1| translation initiation factor [Zea mays]
          Length = 414

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 196/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 42  SFDDMGLQENLLRGIYRYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G       + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 102 QLDYGLVE---CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILGS 158

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 159 GVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKIQVG 218

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 219 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDL--YE 276

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 277 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  I+
Sbjct: 337 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERIVFDIQ 396

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     ++ L  +++ L
Sbjct: 397 KFYNVLIEELPANVADL 413


>gi|148184|gb|AAA67581.1| unknown [Escherichia coli str. K-12 substr. MG1655]
          Length = 421

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 137/413 (33%), Positives = 206/413 (49%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AA GL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAAXGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGAPRNRRRSG 421


>gi|332884045|gb|EGK04325.1| hypothetical protein HMPREF9456_01353 [Dysgonomonas mossii DSM
           22836]
          Length = 374

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 144/373 (38%), Positives = 218/373 (58%), Gaps = 5/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   ++ A+ + GY  PTPIQ K I   L   D+ G+AQTGTGKTA+F LP++
Sbjct: 1   MTFNELNIIEPILKALEEKGYTTPTPIQEKAIIPALTNRDILGLAQTGTGKTAAFSLPII 60

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L   +   + R  R LIL PTRELA Q+ D+   Y +   L   ++ GG+  +AQ  +
Sbjct: 61  QQLYLNKVSGKRREIRALILTPTRELAIQINDSLNDYTQYTGLRHCVIYGGVKQKAQTDE 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+L+ TPGR+LD  N+G + +++I   V+DEADRMLDMGFI  I+ +   +P  +
Sbjct: 121 LKTGIDILVATPGRLLDLINQGFINLDSIRHFVLDEADRMLDMGFIHDIKRLLPKLPKEK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSATM   +  +S + L++P ++EV   SS  +TI+        Q  K   +    
Sbjct: 181 QTLFFSATMPSTIASLSRSILRDPLKVEVTPASSVIDTIKQYLYFVEKQEKKDLLINLLK 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   ++ ++F   K     +   L K G    AIHGN  Q +R + L+NFK    ++
Sbjct: 241 KDKK---QSVLVFSRTKHGADKIARLLCKAGIGSEAIHGNKSQNARQRALTNFKSQKTRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+  +  V N+D+P+  E Y+HRIGRTGRAG  G A T  + E+   ++
Sbjct: 298 LIATDIAARGIDVDQLELVINYDLPDVPETYVHRIGRTGRAGNSGTALTFCSAEENAMLN 357

Query: 359 AIEKLIEKKVDWL 371
            I+KL  KK++ L
Sbjct: 358 DIQKLTGKKLNQL 370


>gi|312130956|ref|YP_003998296.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311907502|gb|ADQ17943.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 428

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 144/419 (34%), Positives = 226/419 (53%), Gaps = 6/419 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L+ +++ AV + GY +PT IQ K IP++   HDV GIAQTGTGKTA+++LP+L 
Sbjct: 4   TFKDLDLNKQLIMAVEELGYTEPTEIQEKAIPIIQAGHDVLGIAQTGTGKTAAYLLPVLM 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  + +    R L+L PTREL  Q+ +      K  +L +  L GG+  + Q + L++
Sbjct: 64  KVKYAQGQNM--RALVLAPTRELVMQIHEAAVGLAKYTDLRMVALYGGLGPKTQMENLKK 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D++I TPGR +D +  G++ + +++ L++DEAD+M+DMGF+P I+ I  ++P  R+ L
Sbjct: 122 GVDIIIATPGRFMDLYRMGEIPVKSLQYLILDEADKMMDMGFMPQIRQILEVIPRKRKNL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCALLQQLLQ 240
           LFSAT    ++++SE FL+ P +IEV   ++ A T+E          +K           
Sbjct: 182 LFSATFQPRVERLSEEFLEAPYKIEVTPSATAASTVEQHIYRLPNFKTKINLLGYLFENT 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                           NV             +  +H N  Q +R+  +++FK G IQ++V
Sbjct: 242 EIPRAIIFCRTKAVADNVYKFLERKVIGSGKIRVLHANKGQNTRINAINDFKSGEIQVLV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D+AARG+D+  V HV NFDVP   E+Y+HRIGRTGRA   G A T V K +  HI+ I
Sbjct: 302 STDVAARGIDVSGVSHVINFDVPLVYEDYVHRIGRTGRAKSEGIALTFVLKHEEFHIERI 361

Query: 361 EKLIEKKVDWLNGDLSSLNPP---LEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           EKLI   +  L              E  ++ +    ++    P     F  +K   + +
Sbjct: 362 EKLIRNPIPELPIPEKVKIEETSFEENQEMLKAIDTQRKKLDPTFQGAFHEKKAKNARK 420


>gi|198435916|ref|XP_002130991.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Ciona intestinalis]
          Length = 1150

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 145/440 (32%), Positives = 233/440 (52%), Gaps = 15/440 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S K++ A+  A Y KPT IQ + IP ++  HD+ GIA+TG+GKT +F+LPML 
Sbjct: 491 SWVQAGVSYKMLNALKKANYEKPTVIQAQAIPAIMSGHDLIGIAKTGSGKTVAFLLPMLR 550

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    +K+ K+  L V  + GG     Q  +L
Sbjct: 551 QIMDQRPLEDTEGPIAVIMTPTRELALQITKECKKFTKSLKLHVVCVYGGTGISEQIAEL 610

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     N     +     LV+DEADRM DMGF P + ++ +    
Sbjct: 611 KRGAEIIVCTPGRMIDMLTVNNGRVTNLRRCTYLVLDEADRMFDMGFEPQVMHVINSCRP 670

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT   +++ ++   L  P  ++V   S     ++           +K   L 
Sbjct: 671 DRQTVLFSATFPRQMEALARRILNKPVEVQVGGRSVVCSDVKQQV--LILTEEQKFLKLL 728

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL         ++F ++++    L   L  + +S  A+HG IDQ  R  I+S+FK G  
Sbjct: 729 ELLGQYQEKGAVLVFVDKQERADYLLKELMDKSYSCMALHGGIDQYDRDSIISDFKRGVN 788

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           QL++A+ +AARGLD+ ++  V NF+ PN  E+Y+HR GRTGRAG  G A+T + ++  ++
Sbjct: 789 QLLIATSVAARGLDVKNLILVVNFNCPNHYEDYVHRCGRTGRAGNKGFAYTFITQDQARY 848

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K +E  +  +  DL  L    ++   AQ    + N+    +   FD        +
Sbjct: 849 AGEIIKALELSLTKVPPDLEMLWNQFKEEQKAQGKSVKSNSGFTGRGFKFD--------E 900

Query: 417 KSHIPLKESEKISKLQQDIQ 436
             ++  KE ++I K    +Q
Sbjct: 901 TEYVIAKERKQIQKAALGLQ 920


>gi|283049400|gb|ADB07168.1| DEAD-box RNA helicase-like protein [Prunus persica]
 gi|283049402|gb|ADB07169.1| DEAD-box RNA helicase-like protein [Prunus persica]
          Length = 413

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 195/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  SFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     V   + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 101 QLDYA---VVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLYDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ L  +++ L
Sbjct: 396 RFYNVVIEELPSNVADL 412


>gi|195478796|ref|XP_002100656.1| GE17181 [Drosophila yakuba]
 gi|194188180|gb|EDX01764.1| GE17181 [Drosophila yakuba]
          Length = 1215

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 139/447 (31%), Positives = 232/447 (51%), Gaps = 12/447 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 503 TWAQCGVSKKEMDVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 562

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +           +I+ PTREL  Q+  +  K+ K+  L    + GG     Q  +L
Sbjct: 563 HILDQPSLEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAEL 622

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 623 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRP 682

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   L+ P  + V   S   + +E            K   L 
Sbjct: 683 DRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKDVEQNV--VILNDDAKFFKLL 740

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +FK G +
Sbjct: 741 ELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKV 800

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  E  ++
Sbjct: 801 RLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRY 860

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-----KK 411
              I + ++     +  +L +L    + +  A+            K   FD +     K+
Sbjct: 861 AGDIIRALDLSGTLIPAELQTLWTEYKALQEAEGKTVHTGGGFSGKGFKFDEQEFNAVKE 920

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQEN 438
           +   QK+ + L +S+    ++QDI + 
Sbjct: 921 SKKLQKAALGLADSDDEEDIEQDIDQQ 947


>gi|27904825|ref|NP_777951.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|31340034|sp|Q89AF9|DEAD_BUCBP RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|27904223|gb|AAO27056.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 602

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 140/391 (35%), Positives = 223/391 (57%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  GL+  ++ A+ D GYV+P+PIQ   IP +++  DV G+AQTG+GKTA+F LP+L
Sbjct: 6   MTFSSFGLNSCIITALNDIGYVQPSPIQAACIPYLIKGKDVLGMAQTGSGKTAAFALPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL- 119
             ++     VR+P+ L+L PTRELA QVA+ F  + K       L + G        K  
Sbjct: 66  HNIKL---DVRVPQILVLTPTRELAVQVAEAFSNFSKKLIGVHVLALYGGQRYDLQLKSL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  +++ TPGR+LDH  R  L ++N+  LV+DEAD ML MGFI  ++ I + +P   Q
Sbjct: 123 RKGPQIIVGTPGRLLDHLKRRTLSLSNLHSLVLDEADEMLRMGFIEDVETIMTEIPDRHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++S  F++NPK I + +  +T   I+  +   Y + +       +  
Sbjct: 183 TALFSATMPEAIRRISRRFMKNPKEIRIQSNITTRPDIQQSYWMVYGKKTDALIRFLE-- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   + +   LE+ G++  A++G+++Q  R + L   K+G + ++
Sbjct: 241 --AEDFSATIIFVRTKNATLEVSEVLERYGYNSAALNGDMNQSLREQTLEKLKDGRLDIL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR GKA   V   + + +  
Sbjct: 299 IATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRKGKALLFVENRERRLLRN 358

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           IE+ +   +  +N   S           AQ 
Sbjct: 359 IERAMNISISEVNLPKSDFLSKRRLEKFAQK 389


>gi|19114126|ref|NP_593214.1| ATP-dependent RNA helicase Ddx27/Drs1 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|1351656|sp|Q09903|DRS1_SCHPO RecName: Full=ATP-dependent RNA helicase drs1
 gi|1065890|emb|CAA91889.1| ATP-dependent RNA helicase Ddx27/Drs1 (predicted)
           [Schizosaccharomyces pombe]
          Length = 754

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 148/464 (31%), Positives = 231/464 (49%), Gaps = 19/464 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++  + + G+  PT IQ KTIPL L   D+ G A TG+GKTA+F++P+L 
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R LIL PTRELA Q      K     ++ V L IGG+  + Q ++L +
Sbjct: 320 RLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRK 379

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR +DH    +   + NIEI+V+DEADRML+ GF   +  I    P +RQT
Sbjct: 380 RPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQT 439

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTD++  +    L  P R+ V+   +TA+ +   FV    Q       +   L 
Sbjct: 440 MLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLC 499

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  IIF   K     +         +   IHG++ Q  R++ L +F++G    ++
Sbjct: 500 KELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLL 559

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RG+DI  +  V N++ P   E Y+HR+GRT RAGR G+A TL  + D K +  +
Sbjct: 560 ATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKGV 619

Query: 361 --------EKLIEK-----KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
                    KL+ +     KV+    ++  L P ++K  +       +   I ++     
Sbjct: 620 FKNSSAQNTKLVNRNLDFNKVEKFGKEIEELEPVVQK--VLDEEKQERELKIAERDLKKG 677

Query: 408 RRKKNYSSQKSHIPLK---ESEKISKLQQDIQENDADSLGFRGN 448
                Y  +    P +   +SEK  +  +  +  D  SL  R  
Sbjct: 678 ENIMKYGDEIRSRPARTWFQSEKDKQASKASEAKDKKSLAKRKK 721


>gi|261253372|ref|ZP_05945945.1| ATP-dependent RNA helicase RhlE [Vibrio orientalis CIP 102891]
 gi|260936763|gb|EEX92752.1| ATP-dependent RNA helicase RhlE [Vibrio orientalis CIP 102891]
          Length = 488

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 162/441 (36%), Positives = 251/441 (56%), Gaps = 6/441 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEQGYDTPSPIQEQAIPAVLSGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L+ G+  +    R LIL PTRELAAQV +N  KY ++ +LT  ++ GG+    Q  KL
Sbjct: 61  ERLDNGQRVKGNHIRALILTPTRELAAQVQENVFKYSRHQSLTSQVVFGGVKVNPQMLKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DVL+ TPGR+LD + +  +  + +E+LV+DEADRMLDMGFI  I+ I +++P  RQ
Sbjct: 121 RKGCDVLVATPGRLLDLYQQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILNVLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + +P  + VN       T      + Y    +K A +   L
Sbjct: 181 NLLFSATFSAEIRELAKGLVNDPVEVSVNK---ENSTAVTIEQSIYPADKRKKAPMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  ++FC  K     L   L K+G +   IHGN  Q +R + L++FK G ++++
Sbjct: 238 IKDGNWKQTLVFCRTKHGANRLAFFLNKEGITAAPIHGNKSQGARTRALADFKSGDVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V N+++P+ +E+Y+HRIGRTGRAG  G+A +LV  ++   +  
Sbjct: 298 VATDIAARGIDIPQLPQVVNYELPHVSEDYVHRIGRTGRAGEVGRAISLVEADEAGELFG 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+LI++ +  +  +L    P  E  +        K     +       + ++   Q+S 
Sbjct: 358 IERLIQQVLPRI--ELEGFKPVNELPESRLDTRPIKPKKPKKPKKPSQPKAEHADGQRSG 415

Query: 420 IPLKESEKISKLQQDIQENDA 440
              + ++  SK ++    N  
Sbjct: 416 DNARGNKPASKNKRHFGHNKP 436


>gi|261823430|ref|YP_003261536.1| ATP-dependent RNA helicase RhlB [Pectobacterium wasabiae WPP163]
 gi|261607443|gb|ACX89929.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 430

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 133/422 (31%), Positives = 211/422 (50%), Gaps = 9/422 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P+V+ A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKTLAFLASTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +   PR LI+ PTRELA Q+  + E       L + L  GG  ++ Q K
Sbjct: 70  YLLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+L+ T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILVGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 AQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F +G + 
Sbjct: 249 TLLEEEWPDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGNLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG+ G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE  I   +     +    ++ L  P      ++ N+  + +    + +G  R  +  
Sbjct: 369 PAIETYIGHGIPVSKYNSDALMNDLPAPKRLTRPSRSNNGPRRHSSAPRRSGAPRNNRKR 428

Query: 414 SS 415
           + 
Sbjct: 429 AD 430


>gi|15804370|ref|NP_290410.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 EDL933]
 gi|15833967|ref|NP_312740.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           Sakai]
 gi|168764143|ref|ZP_02789150.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4501]
 gi|217325465|ref|ZP_03441549.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           TW14588]
 gi|32363366|sp|Q8XAT4|RHLB_ECO57 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|12518640|gb|AAG58974.1|AE005609_6 putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
           EDL933]
 gi|13364188|dbj|BAB38136.1| putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
           Sakai]
 gi|189365822|gb|EDU84238.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4501]
 gi|217321686|gb|EEC30110.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           TW14588]
 gi|326347935|gb|EGD71649.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           1044]
          Length = 421

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 139/413 (33%), Positives = 209/413 (50%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L         +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  CLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG +G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGANGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGAPRNRRRSG 421


>gi|209878704|ref|XP_002140793.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209556399|gb|EEA06444.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 562

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 128/412 (31%), Positives = 205/412 (49%), Gaps = 7/412 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +      ++ A+  AG+ +PT IQ++  P+ L   D+ GIA+TG+GKT  F+LP + 
Sbjct: 148 SFDESSFPDFLIDALYRAGFTEPTAIQVQGWPVALSGRDMIGIAETGSGKTLGFLLPSMV 207

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +  +        P  LIL PTREL  Q+ +   ++G    +    + GG+P  +Q   L
Sbjct: 208 HISAQPRLRYGDGPICLILAPTRELVEQIREQANRFGNILRIRNTAVYGGVPKRSQQISL 267

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G ++ I  PGR++D    G   ++ +  LV+DEADRMLDMGF P I+ + S +   RQ
Sbjct: 268 RNGVEICIACPGRLIDFLEEGCTNLSRVTYLVLDEADRMLDMGFEPQIRKLVSQIRPDRQ 327

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY---AQYSKKCALLQ 236
           TLL+SAT   E+QK++ +  +            T +   +             K    + 
Sbjct: 328 TLLWSATWPKEVQKLARDLCREEPVHINVGSIDTLKASHNIKQYIDVVDEYQKKGRLRMF 387

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                       +IFC  KK    L   L  +G+    IHG+  Q  R  +L+ F+ GT 
Sbjct: 388 LNQVMNSPTSKVLIFCETKKGADILTRELRLEGWPALCIHGDKKQEERTWVLNEFRNGTS 447

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +M+A+D+AARGLD+ D+  V N+D PN+ E+YIHRIGRTGRAG  G + +    +  + 
Sbjct: 448 PIMIATDVAARGLDVKDITFVVNYDFPNQMEDYIHRIGRTGRAGASGVSLSFFTADKCRL 507

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA--QHNHARKNNPIPQKSTGF 406
            + + +++ +    +  +L+ L     K++     +     NN IP   + F
Sbjct: 508 ANDLVRVLREAKQDIPPELTKLGTSHYKVNQRGGPNRRGNANNNIPLGQSRF 559


>gi|89075608|ref|ZP_01162009.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89048615|gb|EAR54188.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 446

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 126/446 (28%), Positives = 208/446 (46%), Gaps = 10/446 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F DLGL P+++  +    + + T IQ   IP+ +   D+   ++TG+GKT +F+LP M
Sbjct: 1   MHFKDLGLDPRLLKKINHLAFDRATEIQQTAIPVAIAGKDILASSKTGSGKTLAFLLPAM 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +        R PR LIL PTRELA QV                L++GG  F  Q K L
Sbjct: 61  QRMYRSKPFTRRDPRVLILTPTRELAKQVFAQLRTLNAGTPYDGTLIVGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                 ++ TPGR+ DH       ++ +E+L++DEADR+LD+GF   ++ I       R+
Sbjct: 121 RNDPMFVVATPGRLADHLEHRSTHLDGLEMLILDEADRILDLGFEAQLRRINEAANHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D    V            ++   S  E  +         +      L   +
Sbjct: 181 QTLMFSATLDHSDVVEIASEMLDNPKRISIGHSAEEHKDITQRFILCDHLDHKQALLDKI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  IIF   + +   L   L ++     A+ G+++Q  R  I+S F+    +++
Sbjct: 241 LETQDYKQVIIFTATRADTDRLTAELNERKLKAVALSGSLNQNQRNSIMSQFERTCHKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDI +V  V NFD+P  AE Y+HR+GRTGRAG  G A +LV  +D K  + 
Sbjct: 301 VTTDIASRGLDIDNVSLVINFDMPKHAEEYVHRVGRTGRAGNKGDAVSLVGPKDWKSFNN 360

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKIDIAQHNHARK----NNPIPQKSTGFDRRK 410
           +E  +++K+++     L G    L P  +K  I +     K        P+     D+R 
Sbjct: 361 VEAFLKQKIEFTTIEGLEGKFKGLKPAPKKKFIKKKPTGDKVVAQKQQAPRAKKKVDKRF 420

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQ 436
               +  + + + + ++ + + +D +
Sbjct: 421 YENQAVGNDVFMPKKKRNTDVSKDGE 446


>gi|283787538|ref|YP_003367403.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
 gi|282950992|emb|CBG90669.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
          Length = 421

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 137/413 (33%), Positives = 209/413 (50%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P+V+ A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPQVIEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 TQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    +++L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTNLPKPLRLTRARPGNGPRRTGAPRNRRRSG 421


>gi|261213074|ref|ZP_05927358.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
 gi|260838139|gb|EEX64816.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
          Length = 448

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 124/386 (32%), Positives = 186/386 (48%), Gaps = 6/386 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR +IL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 61  HKSLKTKAFSAKDPRGVILVPTRELAKQVYGELRSMLAGLSYTATLITGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG   ++ TPGR+ DH +   L +  +E LV+DEADRMLD+GF   ++ I +     R+
Sbjct: 121 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D             +   +     + E  +         +      L   +
Sbjct: 181 QTLMFSATLDHADVNDMAMEMLNEPKRIAIGIGSEEHKDITQHFYLCDHLDHKEALLDRI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  IIF   + +   L   L K      A+ GN++Q  R  I+S F+    +++
Sbjct: 241 LADAEYRQVIIFTATRADTDRLTEKLNKSNLKAVALSGNLNQTQRNTIMSQFERTVFKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDIP V HV NFD+P   E Y+HRIGRTGRAG  G A +LV  +D      
Sbjct: 301 VTTDVASRGLDIPSVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAMSLVGPKDWDSFKR 360

Query: 360 IEKLIEKKVDW-----LNGDLSSLNP 380
           +E  +++ + +     L G    L P
Sbjct: 361 VEAFLQQDIQFEVLEGLQGKFKGLKP 386


>gi|189194769|ref|XP_001933723.1| ATP-dependent RNA helicase DHH1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187979287|gb|EDU45913.1| ATP-dependent RNA helicase DHH1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 512

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 125/416 (30%), Positives = 197/416 (47%), Gaps = 11/416 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 49  LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 108

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     + +    LIL PTRELA Q +   ++ GK+ N+ V +  GG   +    +L 
Sbjct: 109 ERVNPKSPKTQ---ALILVPTRELALQTSQVCKQLGKHLNINVMVSTGGTGLKDDIIRLS 165

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +G   ++  +  V+DEAD++L   F P ++ +    P  RQ 
Sbjct: 166 DPVHIIVGTPGRILDLAGKGVADLSACQTFVMDEADKLLSPEFTPVVEQLLGFHPKDRQV 225

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F                 T+            K+       L 
Sbjct: 226 MLFSATFPIVVKS----FKDKHMNSPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 281

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 282 NKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLV 341

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 342 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYRI 401

Query: 361 EKLIEKKVDWLNGDLSS---LNPPLEKIDIAQHNHARK-NNPIPQKSTGFDRRKKN 412
           E+ +  ++  +   +     +    E I     N  R      PQ   G  R   N
Sbjct: 402 EQELGTEIQPIPQVIEKNLYVYESPESIPRPMSNQQRAPGQGQPQDQEGAARGNPN 457


>gi|114561845|ref|YP_749358.1| ATP-dependent RNA helicase SrmB [Shewanella frigidimarina NCIMB
           400]
 gi|114333138|gb|ABI70520.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 406

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 130/400 (32%), Positives = 207/400 (51%), Gaps = 4/400 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P ++ ++   G+  PT IQ +TIPL + + D+   A TGTGKTASF+LP L
Sbjct: 1   MQFEDFQLDPSLLESLKAMGHNTPTTIQQQTIPLAMDQRDILARAPTGTGKTASFLLPAL 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L     R      + +L PTRELA+Q+            L +A++ GG+P+  Q + L
Sbjct: 61  QHLIDFPRRFEGQARILVLTPTRELASQIHRYASHLATGLELNIAIITGGVPYGPQEEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+LI TPGR++++ ++ K     +EIL+IDEADRMLDMGF   +Q+I       +Q
Sbjct: 121 ADNVDLLIATPGRLMEYLDKDKFDATEVEILIIDEADRMLDMGFSSVVQSIAIEAQGRKQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT+ +               + V+  +  +E  +       A        L   +
Sbjct: 181 NMLFSATL-EGNGVNRFARDLLTDPVMVDVEAPRSEKAKVHQWVHLADDQAHKFALLCHI 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+ +   I+F   ++ V +L   L K       + G+++Q+ R + L  F +G + ++
Sbjct: 240 LQQENVTRTIVFVKTREMVASLEGLLLKANIPCAFMRGDMEQKKRFQALGRFSKGEVNVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+ D+ HV NFD+P  A+ Y+HRIGRT RAG  G A +LV   D++ +  
Sbjct: 300 LATDVAARGIDVDDITHVINFDMPRSADAYVHRIGRTARAGAKGTAISLVEAHDMRIVSK 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           IE+ IE  +      +  L P  ++  +     A   +  
Sbjct: 360 IERYIE--IPLKRRVIEELRPKHKEAKVPGKKKANAKDAR 397


>gi|302765659|ref|XP_002966250.1| hypothetical protein SELMODRAFT_85554 [Selaginella moellendorffii]
 gi|302801131|ref|XP_002982322.1| hypothetical protein SELMODRAFT_116103 [Selaginella moellendorffii]
 gi|300149914|gb|EFJ16567.1| hypothetical protein SELMODRAFT_116103 [Selaginella moellendorffii]
 gi|300165670|gb|EFJ32277.1| hypothetical protein SELMODRAFT_85554 [Selaginella moellendorffii]
          Length = 411

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 195/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 39  TFDSMGLHENLLRGIYAYGFEKPSTIQQRGIVPFCKGIDVIQQAQSGTGKTATFCSGILQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+         + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 99  QLDYNNVE---CQALVLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTDVRQDQRILQA 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 156 GVHVVVGTPGRVYDMLRRRALRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVG 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 216 LFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDL--YE 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IFCN ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 274 TLAITQSVIFCNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   + +ED + +  I+
Sbjct: 334 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFMVREDERMLHDIQ 393

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     ++ L  +++ L
Sbjct: 394 KFYNTVIEELPNNVADL 410


>gi|256829773|ref|YP_003158501.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578949|gb|ACU90085.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
           DSM 4028]
          Length = 444

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 142/427 (33%), Positives = 221/427 (51%), Gaps = 6/427 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF+      ++   + D GYV PTPIQI+ IP VL   DV G+AQTGTGKTA+F LP+L
Sbjct: 1   MDFSSFSFDQRLNVGIRDCGYVTPTPIQIQAIPSVLAGKDVLGLAQTGTGKTAAFALPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      VR P  +++       A                 +  + G   E    K  
Sbjct: 61  QRMITDGISVRGPVRVLVLAPTRELALQIHETFISLGKQTGIRSAAVFGGVGETPQVKAA 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R A VL+  PGR+LD  NRG + ++++  LV+DEADRM DMGF+P ++ I + +P  RQ 
Sbjct: 121 RQASVLVACPGRLLDLVNRGLVDLSHVNALVLDEADRMFDMGFLPDLRRIMAKLPAKRQN 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++K+++  L  P  ++V+  +   +     +  +  Q             
Sbjct: 181 LLFSATMPPEIRKIADQVLVQPAVVQVSNTAPPEKIRHTLYPVSAGQKMGLLEAYLGRTP 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF   K    +L   LE++G    ++ GN+ Q  R + L  F+ G  ++MV
Sbjct: 241 HDC----VLIFTRTKHRAKSLARKLEQKGMLATSLQGNLSQNRRQEALDGFRSGKYRIMV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D   + HV NFD+P+ AE+Y HRIGRTGRA + G+A TLV+ ED   I+AI
Sbjct: 297 ATDIAARGIDCVRISHVVNFDLPDTAESYTHRIGRTGRADKSGEAITLVSPEDSAQINAI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS--TGFDRRKKNYSSQKS 418
           E+++  +++ +  +  + +   ++    +   AR     P ++  +G   R    ++  S
Sbjct: 357 ERILGGRLERVRLEGFAYSSGGDEASFEEPRPARAPGRTPGRNAPSGRSGRPAPRNTSDS 416

Query: 419 HIPLKES 425
             P   S
Sbjct: 417 RSPAGRS 423


>gi|312373567|gb|EFR21282.1| hypothetical protein AND_17289 [Anopheles darlingi]
          Length = 744

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 137/384 (35%), Positives = 210/384 (54%), Gaps = 3/384 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           MDF D GL   ++  +   G+ KPT IQ + +P+ L   D+ GIAQTG+GKT ++V+P  
Sbjct: 118 MDFEDGGLPSYIMEELKRQGFSKPTAIQAQGMPIALSGRDMVGIAQTGSGKTLAYVVPSL 177

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +    ++   R   P  LIL PTRELA Q+      +G   +     + GG P   Q + 
Sbjct: 178 VHIQHQESIRRGDGPIALILAPTRELAQQIQQVATDFGSRVSANNTCVFGGAPKGPQIRD 237

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERGA+++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 238 LERGAEIVIATPGRLIDFLERGITNLKRCTYLVLDEADRMLDMGFEPQIRKIMGQIRPDR 297

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQ 237
           Q L++SAT   E+++++E FL +  +I + + + +A       V     Y K    +   
Sbjct: 298 QVLMWSATWPKEVRQLAEEFLADYIQINIGSLNLSANHNILQIVDVCEDYEKDQKLMKLL 357

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              S +     IIF   K+ V ++   + + G+   AIHG+  Q+ R  +LS F+ G   
Sbjct: 358 TEISAEPDTKTIIFVETKRRVDDITRIVNRNGWRAVAIHGDKSQQERDYVLSAFRNGRQG 417

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    +    
Sbjct: 418 ILVATDVAARGLDVEDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKA 477

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPP 381
           + +  ++ +    +N  L  L  P
Sbjct: 478 NDLINVLREANQVINPRLVELAKP 501


>gi|195379947|ref|XP_002048732.1| GJ21163 [Drosophila virilis]
 gi|194143529|gb|EDW59925.1| GJ21163 [Drosophila virilis]
          Length = 519

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 121/441 (27%), Positives = 196/441 (44%), Gaps = 12/441 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +   +   G    TPIQ   IP +L   D  G A+TG+GKT +F LP+L  
Sbjct: 9   FQKLGLRPWLAKQLTKLGLKGVTPIQENCIPAILSGKDCIGAAKTGSGKTFAFALPILEK 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PT ELA Q+++ F   G+   + V ++ GG     +++KL + 
Sbjct: 69  LSE---EPVSHFALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQR 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++  PGR+ DH         +    ++ +    +  G       I        +  L
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKTRQNL 185

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI---EHCFVATYAQYSKKCALLQQLL 239
           F +    +  K S  F      +E +  S  A      +   +              +  
Sbjct: 186 FFSATMKDFMKESSIFPIAKDCLEWSQESDVATVDTLEQRYLLCADYDRDMVLIEALRKY 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + Q+   N +IF N KK    L  +L         +HG + Q+ R+  LS FK   I+ +
Sbjct: 246 REQNENANVMIFTNTKKYCQLLSMTLSSMEIENVCLHGFMRQKERVAALSRFKSNHIRTL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           +A+D+AARGLDIP V  V N  +P   + YIHR+GRT RAGR G A ++     D++ + 
Sbjct: 306 IATDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGLAISIFRFPRDLELLG 365

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           AIE  I  K+     D       +E+I   Q N  R+ + +   +  FD R +NY  +  
Sbjct: 366 AIEAEINTKLTEHPID----QRMVERI-FMQVNVTRRESEMQLDNNDFDERAQNYRRKTW 420

Query: 419 HIPLKESEKISKLQQDIQEND 439
            +  K+ +++  L +  Q++ 
Sbjct: 421 IMEGKDPDQMEALYRKKQKDK 441


>gi|84995732|ref|XP_952588.1| eukaryotic translation initiation factor 4a [Theileria annulata
           strain Ankara]
 gi|65302749|emb|CAI74856.1| eukaryotic translation initiation factor 4a, putative [Theileria
           annulata]
          Length = 400

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 120/376 (31%), Positives = 203/376 (53%), Gaps = 6/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L+  ++  +   G+ +P+ IQ + I  +++ +D  G AQ+GTGKTA+F +  L 
Sbjct: 29  SFDALKLNEDLLRGIYSYGFERPSAIQQRGIKPIIENYDTIGQAQSGTGKTATFSIAALQ 88

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I+      V   + LIL PTRELA Q+       G    +     +GG        KL+ 
Sbjct: 89  IINY---DVMSCQILILAPTRELAQQIQKVVLALGDYLKVQCHACVGGTVVRDDVHKLKA 145

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D   +  LL + +++ ++DEAD ML  GF   IQ++   +P   Q  
Sbjct: 146 GVHMVVGTPGRVYDMIEKKALLTDKMKLFILDEADEMLSRGFKGQIQDVFKRLPPDIQVA 205

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +E+ +++  F+++PKRI V     T E I            +        L  
Sbjct: 206 LFSATMPNEILELTTKFMRSPKRILVKKDELTLEGI---KQFYILIDKEYKFETLCDLYE 262

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   II+CN ++ V  L   ++++ F+V ++HG++ Q+ R  I+  F+ G+ ++++ 
Sbjct: 263 SVTITQAIIYCNTRRKVDYLTLKMQEKDFTVSSMHGDMGQKERDLIMREFRSGSTRVLIT 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   +NYIHRIGR+GR GR G A   V  +D++ + +IE
Sbjct: 323 TDLLARGIDVQQVSLVINYDLPMSPDNYIHRIGRSGRFGRKGVAINFVTHQDMETMKSIE 382

Query: 362 KLIEKKVDWLNGDLSS 377
                +++ +  D++ 
Sbjct: 383 NYYNTQIEEMPADIAE 398


>gi|254975780|ref|ZP_05272252.1| ATP-dependent RNA helicase [Clostridium difficile QCD-66c26]
 gi|255650694|ref|ZP_05397596.1| ATP-dependent RNA helicase [Clostridium difficile QCD-37x79]
 gi|260687441|ref|YP_003218575.1| ATP-dependent RNA helicase [Clostridium difficile R20291]
 gi|260213458|emb|CBE05139.1| ATP-dependent RNA helicase [Clostridium difficile R20291]
          Length = 497

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 136/431 (31%), Positives = 233/431 (54%), Gaps = 11/431 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L+ K++ ++   GY  P+ +Q + IP +L+  ++   ++TG+GKT SF +P+  
Sbjct: 4   TFEKFKLNEKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTVSFAIPLCE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +      ++    LI+ PTRELA QV D     G+   +  + + G    + Q  +L++
Sbjct: 64  NINVDCNNIQA---LIVVPTRELALQVKDEISDIGRLKKVRCSAIFGKQSIKDQIAELKQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH N+G + + N++ LVIDEAD+M + GF+  ++ I   +P  +   
Sbjct: 121 RVHIVVATPGRILDHINKGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVS 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCALLQQLLQ 240
           LFSAT+ +E++ + E ++ +   I +    S              + + ++  +L + L 
Sbjct: 181 LFSATIDEEIKYICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYILLKELI 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  K+ IIFCN K+ V  L + + K+GF +  +H ++ Q  R+ ++ +FK     ++V
Sbjct: 241 YSENPKSVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQKFNILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +SD+A+RG+ I D+  V N+DVP   ENYIHRIGRTGR G  GKA T+V ++D K+I+ I
Sbjct: 301 SSDVASRGIHIDDISLVINYDVPQDKENYIHRIGRTGRKGNSGKAITIVTEKDEKYIENI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  I  KV+ L  D+        KI   +++       I +K +   +  KN S +   I
Sbjct: 361 ETYIGYKVNELK-DIEKSRITHGKILFEEYSKG-----ILKKVSKRKKVDKN-SYKSKDI 413

Query: 421 PLKESEKISKL 431
            L    ++ KL
Sbjct: 414 KLNIESEVVKL 424


>gi|254524903|ref|ZP_05136958.1| probable ATP-dependent rna helicase protein [Stenotrophomonas sp.
           SKA14]
 gi|219722494|gb|EED41019.1| probable ATP-dependent rna helicase protein [Stenotrophomonas sp.
           SKA14]
          Length = 473

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 169/434 (38%), Positives = 249/434 (57%), Gaps = 17/434 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PTPIQ + IPL L   D+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L      V    R PR LIL PTRELA QV D+   Y K   +  A + GG+    Q 
Sbjct: 61  QHLGTASQEVRSGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L RG D+L+  PGR++DH  R  + ++ IE+LV+DEADRMLDMGF+P I+ I + +P 
Sbjct: 121 DILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPK 180

Query: 177 TRQTL-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +   LFSAT  D +++++  F++NP++I+V   ++ AETI H      A   +   L 
Sbjct: 181 QNRQTLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDAGRKRDLLLH 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                S+   +  ++F   K     L   LEK G    AIHGN  Q  R++ L +FK G 
Sbjct: 241 LLAQDSR---EQTLVFARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGR 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARG+DI ++  V NFD+P  AE+Y+HRIGRTGR G  G+A +LVA++++K
Sbjct: 298 VTVLVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVK 357

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLE----KIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            + AI +L+ + +D  +     L  P+         A+H+   +    P+KS    RR  
Sbjct: 358 LLRAITRLLGRDMDIRDVPGFELQTPIRWGNSAPGKAEHDTGER---APRKSHA--RRPH 412

Query: 412 NYSSQKSHIPLKES 425
             + + +H   K++
Sbjct: 413 GDAPRHAHAGPKKA 426


>gi|170769827|ref|ZP_02904280.1| ATP-dependent RNA helicase RhlB [Escherichia albertii TW07627]
 gi|170121265|gb|EDS90196.1| ATP-dependent RNA helicase RhlB [Escherichia albertii TW07627]
          Length = 421

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 139/413 (33%), Positives = 210/413 (50%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFV----L 57
            F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSSFH 69

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L+       +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRTRPGNGPRRTGAPRNRRRSG 421


>gi|326405112|ref|YP_004285194.1| ATP-dependent RNA helicase RhlE [Acidiphilium multivorum AIU301]
 gi|325051974|dbj|BAJ82312.1| ATP-dependent RNA helicase RhlE [Acidiphilium multivorum AIU301]
          Length = 470

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 156/408 (38%), Positives = 239/408 (58%), Gaps = 13/408 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGL+  ++ A+ +  Y  PTPIQ ++IP++L+ HD+ GIAQTGTGKTA+FVLP+L 
Sbjct: 3   DFTTLGLAEPLLRAISEQSYETPTPIQARSIPVMLEGHDLVGIAQTGTGKTAAFVLPILH 62

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   RAR         +L PTRELA Q+AD    YGK    +VA++IGG     Q +++
Sbjct: 63  RIAANRARPAPRACRALVLAPTRELATQIADAARTYGKFTRPSVAVVIGGAKPGPQARRM 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G D+L+ TPGR+LDH   G + ++ +E +V+DEAD+MLD+GFIP I+ I + +P  RQ
Sbjct: 123 ESGVDLLVATPGRLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQIMAKLPRQRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++FSATM   ++ ++  FL++P+ + V+  S   + I+   +    +  K         
Sbjct: 183 AVMFSATMPKPIRALAGEFLRDPREVAVSVESKPVDRIDQQVLLLAPEEKKDKLAWLL-- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +   ++  I+F   K     +   LE  G    AIHGN  Q  R + L  F+ G I+++
Sbjct: 241 -ADVAVERAIVFTRTKHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGRIRVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V HV NF++PN  E+Y+HRIGRT RAG  G A +LV   ++ ++  
Sbjct: 300 VATDIAARGIDVDNVSHVVNFELPNVPESYVHRIGRTARAGAEGVAISLVEPSELPYLRD 359

Query: 360 IEKLIEKKVDWLNG---DLSSLNPP---LEKIDIAQHNHARKNNPIPQ 401
           IE LI + +  + G    +  L PP     +  +A+     K N  P+
Sbjct: 360 IETLIGRHL--VPGGAQPVRGLAPPHLLRARNQVARQGQMPKRNGPPK 405


>gi|229522888|ref|ZP_04412302.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TM 11079-80]
 gi|229340105|gb|EEO05113.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TM 11079-80]
          Length = 464

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 168/392 (42%), Positives = 243/392 (61%), Gaps = 10/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C         KK   +   L
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADV---KKKPDMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 238 VKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVMNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDI 387
           IE+L +  +  +N  L+   P    P  K+D 
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNQLPESKLDT 387


>gi|148261622|ref|YP_001235749.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium
           cryptum JF-5]
 gi|146403303|gb|ABQ31830.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5]
          Length = 525

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 156/408 (38%), Positives = 239/408 (58%), Gaps = 13/408 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGL+  ++ A+ +  Y  PTPIQ ++IP++L+ HD+ GIAQTGTGKTA+FVLP+L 
Sbjct: 58  DFTTLGLAEPLLRAISEQSYETPTPIQARSIPVMLEGHDLVGIAQTGTGKTAAFVLPILH 117

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   RAR         +L PTRELA Q+AD    YGK    +VA++IGG     Q +++
Sbjct: 118 RIAANRARPAPRACRALVLAPTRELATQIADAARTYGKFTRPSVAVVIGGAKPGPQARRM 177

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G D+L+ TPGR+LDH   G + ++ +E +V+DEAD+MLD+GFIP I+ I + +P  RQ
Sbjct: 178 ESGVDLLVATPGRLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQIMAKLPRQRQ 237

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++FSATM   ++ ++  FL++P+ + V+  S   + I+   +    +  K         
Sbjct: 238 AVMFSATMPKPIRALAGEFLRDPREVAVSVESKPVDRIDQQVLLLAPEEKKDKLAWLL-- 295

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +   ++  I+F   K     +   LE  G    AIHGN  Q  R + L  F+ G I+++
Sbjct: 296 -ADVAVERAIVFTRTKHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGRIRVL 354

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V HV NF++PN  E+Y+HRIGRT RAG  G A +LV   ++ ++  
Sbjct: 355 VATDIAARGIDVDNVSHVVNFELPNVPESYVHRIGRTARAGAEGVAISLVEPSELPYLRD 414

Query: 360 IEKLIEKKVDWLNG---DLSSLNPP---LEKIDIAQHNHARKNNPIPQ 401
           IE LI + +  + G    +  L PP     +  +A+     K N  P+
Sbjct: 415 IETLIGRHL--VPGGAQPVRGLAPPHLLRARNQVARQGQMPKRNGPPK 460


>gi|296502998|ref|YP_003664698.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|296324050|gb|ADH06978.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
          Length = 455

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 141/410 (34%), Positives = 229/410 (55%), Gaps = 11/410 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 3   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 63  KIDPECSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE           +      + + 
Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFVM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           EK +   +     +     P ++++D       +       ++   D R+
Sbjct: 357 EKTLGAPIQREIIE----QPKIKRVDENGKPVPKPAPKKSGQNRQRDSRE 402


>gi|308051267|ref|YP_003914833.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307633457|gb|ADN77759.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 427

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 132/395 (33%), Positives = 207/395 (52%), Gaps = 5/395 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  L+P+VV A+  +G+   TPIQ  T+P+VL   D+ G AQTGTGKT +F++    
Sbjct: 10  KFADFPLAPQVVEALESSGFTHCTPIQALTLPIVLSGKDIAGQAQTGTGKTLAFLVATFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                        + PR LI+ PTRELA Q+  + E   +   L + L  GG  +++Q  
Sbjct: 70  ELLKQPAPEGHDGKSPRALIMAPTRELAIQIFKDAEPLSEATGLKLGLAYGGEGYDSQRA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D++ +G   +N I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 TLEAGVDILIGTTGRLIDYYKQGTYKLNGIQVMVLDEADRMFDLGFIKDIRYLFRRMPAP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            +      + T   +     +       E        +T +      +   +     L  
Sbjct: 190 AERRNMLFSATLSFKVQELAYEH-MNEPEHVQVEPEQKTGKRIKEELFYPSNDDKMRLLL 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +D     IIF N K    ++   +   G  V  + G++ Q+ R+KIL  FK G + 
Sbjct: 249 TLIEEDWPDKAIIFANTKHRCEDIWAWMAGDGHRVGLLTGDVPQKKRVKILEQFKAGEVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGL I DV HVFN+D+P+ AE+Y+HRIGRTGRAG  G + +   ++   ++
Sbjct: 309 FLVATDVAARGLHIADVTHVFNYDLPDDAEDYVHRIGRTGRAGATGHSISFACEQYALNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
            AIE+ I  ++   + D ++L   + +    Q N 
Sbjct: 369 PAIEEYIGHQIPVSSYDATALLTDIPRPQRIQRNR 403


>gi|213408188|ref|XP_002174865.1| ATP-dependent RNA helicase drs1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212002912|gb|EEB08572.1| ATP-dependent RNA helicase drs1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 730

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 144/467 (30%), Positives = 239/467 (51%), Gaps = 25/467 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++  +    +  PTPIQ KTIP+ L   D+ G A TG+GKTA+FV+P+L
Sbjct: 231 VSFQDMKLSRPILRGLSSLNFEDPTPIQSKTIPVALLGKDIVGAAVTGSGKTAAFVVPIL 290

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     ++   R LI+ PTRELA Q  +  ++     ++T+ L +GG+  + Q ++L 
Sbjct: 291 ERLVYRPKKIPTSRVLIICPTRELAMQCHNVAKRIAAFTDITLCLCVGGLSLKVQEQELR 350

Query: 121 RGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  D++I TPGR +DH    +   ++NIEI+VIDEADRML+ GF   +  I  L P +RQ
Sbjct: 351 KRPDIIIATPGRFIDHVRNSQGFSVDNIEIMVIDEADRMLEDGFADELNEIVKLCPKSRQ 410

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMT+++  +    L  P RI V+   +TA+ +   F+    Q  +    +   +
Sbjct: 411 TMLFSATMTEKVDDLVRLSLNRPVRIFVDAKKATAKRLVQEFIRVRPQREQLRPAMLVHI 470

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  IIF   K     +       G +   IHG++ Q  R++ L +F++G +  +
Sbjct: 471 CKTFFHRRVIIFFRNKAFAHKMRIIFGLVGLNATEIHGSLSQEQRVRALEDFRDGKVDYL 530

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A +LV + D K I  
Sbjct: 531 LATDVASRGLDIKGVEFVINYEAPASHEIYLHRVGRTARAGRSGRAISLVGENDRKVIKD 590

Query: 360 IEK--------------------LIEKKVDWLNGDLSSLNPPLEK---IDIAQHNHARKN 396
           + K                     I K+++ L   +  +    ++   I IA+ +  +  
Sbjct: 591 VLKSSENQHDNVVSRNLDFPRVEAIGKELEELEDTVKQVMEEEKQERHIKIAERDLKKGE 650

Query: 397 NPIPQKSTGFDRRKKN-YSSQKSHIPLKESEKISKLQQDIQENDADS 442
           N +  +     R  +  + ++K     K +     +    ++   D+
Sbjct: 651 NILKHQDEIKARPARTWFQTEKEKKASKTAATGKAVPLSKRKKAMDA 697


>gi|190572660|ref|YP_001970505.1| putative ATP-dependent RNA helicase 1 [Stenotrophomonas maltophilia
           K279a]
 gi|190010582|emb|CAQ44191.1| putative ATP-dependent RNA helicase 1 [Stenotrophomonas maltophilia
           K279a]
          Length = 470

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 169/434 (38%), Positives = 249/434 (57%), Gaps = 17/434 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PTPIQ + IPL L   D+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L      V    R PR LIL PTRELA QV D+   Y K   +  A + GG+    Q 
Sbjct: 61  QHLGTASQEVRSGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L RG D+L+  PGR++DH  R  + ++ IE+LV+DEADRMLDMGF+P I+ I + +P 
Sbjct: 121 DILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPK 180

Query: 177 TRQTL-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +   LFSAT  D +++++  F++NP++I+V   ++ AETI H      A   +   L 
Sbjct: 181 QNRQTLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDAGRKRDLLLH 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                S+   +  ++F   K     L   LEK G    AIHGN  Q  R++ L +FK G 
Sbjct: 241 LLAQDSR---EQTLVFARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGR 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARG+DI ++  V NFD+P  AE+Y+HRIGRTGR G  G+A +LVA++++K
Sbjct: 298 VTVLVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVK 357

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLE----KIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            + AI +L+ + +D  +     L  P+         A+H+   +    P+KS    RR  
Sbjct: 358 LLRAIVRLLGRDMDIRDVPGFELQVPIRWGNSAPGKAEHDTGER---APRKSHA--RRPH 412

Query: 412 NYSSQKSHIPLKES 425
             + + +H   K++
Sbjct: 413 GDAPRHAHAGPKKA 426


>gi|121702529|ref|XP_001269529.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1]
 gi|143462228|sp|A1CR32|RRP3_ASPCL RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|119397672|gb|EAW08103.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1]
          Length = 473

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 141/426 (33%), Positives = 228/426 (53%), Gaps = 8/426 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+  ++  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 54  SFKDLGIIDQLCEACATMGYKAPTPIQAESIPLALQDRDLIGLAETGSGKTAAFALPILQ 113

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    L+L PTRELA Q++ +FE  G   N+  A+++GG+   +Q+  L +
Sbjct: 114 ALMD---KPQSFFGLVLAPTRELAFQISQSFEALGSTINVRCAVIVGGMDMVSQSIALGK 170

Query: 122 GADVLICTPGRI-LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+     N     +  ++ LV+DEADR+LDM F P +  I  ++P  R+T
Sbjct: 171 KPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKILPRERRT 230

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L NP R+  +  S+  +T+     +      K   +    L 
Sbjct: 231 FLFSATMSSKVESLQRASLSNPLRV--SVSSNKYQTVSTLLQSYRFIPHKHKDIYLVYLL 288

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ IIF         +   L   GF    +HG + Q SR+  L  F+  +  ++V
Sbjct: 289 NEFVGQSAIIFTRTVHETQRISFLLRALGFGAIPLHGQLSQSSRLGALGKFRSRSRDILV 348

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V NFD+P  ++ Y+HR+GRT RAG+ G A + V + D++    I
Sbjct: 349 ATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRI 408

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  + KK+D  + +   +    E++  AQ     +     +K     R KK    ++S  
Sbjct: 409 EGALGKKLDEYDLEKDEVMVLAERVGEAQRQAIMEMKNFDEKKGT--RAKKFGKGKRSRD 466

Query: 421 PLKESE 426
            + + E
Sbjct: 467 EMDQEE 472


>gi|297797047|ref|XP_002866408.1| hypothetical protein ARALYDRAFT_919338 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312243|gb|EFH42667.1| hypothetical protein ARALYDRAFT_919338 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 455

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 143/428 (33%), Positives = 223/428 (52%), Gaps = 18/428 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+  ++V A    G+  P+ IQ + +P  L+  DV G+AQTG+GKT +F +P+L 
Sbjct: 10  TFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQ 69

Query: 62  ---------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                      +KGR         +L PTRELA Q+A+ FE  G + +L  A+L+GGI  
Sbjct: 70  ALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDR 129

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNIT 171
             Q   L +   V++ TPGR+ DH +  K     +++ LV+DEADR+L+  F   +  I 
Sbjct: 130 MQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQIL 189

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
             +P  R+T LFSATMT +++K+    L+NP +IE  +  ST +T+           +K 
Sbjct: 190 EEIPRERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTL---KQQYRFVAAKY 246

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                  + S+      +IF         L   L   GF    I G + Q  R+  L+ F
Sbjct: 247 KDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKF 306

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   ++V +D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR G   +LV +
Sbjct: 307 KAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            +++    IEKLI KK+     +   +   LE++       A+K + +  K +G  +R+ 
Sbjct: 367 YELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERV-----AEAKKLSAMNMKESGGRKRRG 421

Query: 412 NYSSQKSH 419
               +   
Sbjct: 422 EDDEESER 429


>gi|291614807|ref|YP_003524964.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291584919|gb|ADE12577.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 466

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 152/395 (38%), Positives = 225/395 (56%), Gaps = 26/395 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS ++  AV + GY +PTPIQ + IP++L+  D+ G AQTGTGKTA F LP+L
Sbjct: 1   MSFKSLGLSEEIARAVSERGYTEPTPIQAQAIPVILKGGDLMGGAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMPRTL-----------------------ILEPTRELAAQVADNFEKYGK 97
             L +     +                            +L PTRELAAQV ++   YGK
Sbjct: 61  QRLMEKPISGQPSPQSSPASGRGGEREKHSSIRAPIRALVLTPTRELAAQVEESVRLYGK 120

Query: 98  NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
              L   ++ GG+    Q K+L    D+L+ TPGR+LDH  +  + ++++EILV+DEADR
Sbjct: 121 YLPLKSMMMFGGVNINPQIKQLHGRVDILVATPGRLLDHLQQKTVDLSHVEILVLDEADR 180

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I+ + +++P  RQ LLFSAT +DE++ +++  L NP  IEV   +   E I
Sbjct: 181 MLDMGFIRDIKRVLAVLPKQRQNLLFSATFSDEIKLLADGLLNNPALIEVARRNQANELI 240

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
           E        +  +                  ++F   K    NL   L K+G    AIHG
Sbjct: 241 EQRVYPVDRERKRNLLTHL---IKDHNWFQVLVFTRTKHGANNLADHLNKEGIPAMAIHG 297

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           N  Q +R + L+ FK   +Q++VA+D+AARG+DI ++ HV N+++PN  E+Y+HRIGRTG
Sbjct: 298 NKSQAARTRALAEFKTAKLQVLVATDIAARGIDISELPHVVNYELPNVPEDYVHRIGRTG 357

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
           RAG  G+A +LV  ++ K +  IE+LI++++  + 
Sbjct: 358 RAGSEGEASSLVCIDEKKLLHDIERLIKREIPVVQ 392


>gi|242051719|ref|XP_002455005.1| hypothetical protein SORBIDRAFT_03g002860 [Sorghum bicolor]
 gi|241926980|gb|EES00125.1| hypothetical protein SORBIDRAFT_03g002860 [Sorghum bicolor]
          Length = 488

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 135/420 (32%), Positives = 219/420 (52%), Gaps = 24/420 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D+G    V+  +  AG+V+PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP +
Sbjct: 91  LEFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAI 150

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +           P  L+L PTRELA Q+     K+G +  +    + GG+P   Q + 
Sbjct: 151 VHVNAQPILAPGDGPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRD 210

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   R
Sbjct: 211 LQKGVEIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRPDR 270

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL +SAT   E+++++ NFL +P ++ + +    A       V   ++  K    L  L
Sbjct: 271 QTLYWSATWPKEVEQLARNFLFDPYKVTIGSEELKANHAIVQHVEILSESQKY-NKLVNL 329

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+        +IF + KK    +   L   G+   +IHG+  Q  R  +LS FK G   +
Sbjct: 330 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPI 389

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M A+D+AARGL    V +V N+D P   E+Y+HRIGRTGRAG  G A++     + +   
Sbjct: 390 MTATDVAARGL----VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYSFFTAANARFAK 445

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +  ++E+    ++ +L+++                     P  S+G+  R + Y   +S
Sbjct: 446 ELISILEEAGQKVSSELAAM-----------------GRGAPPPSSGYRDRYRGYGGGRS 488


>gi|284038209|ref|YP_003388139.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
 gi|283817502|gb|ADB39340.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
          Length = 447

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 150/447 (33%), Positives = 228/447 (51%), Gaps = 23/447 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+  ++ A+ D GY  PT IQ K   +V+   DVCGIAQTGTGKT +++LP L
Sbjct: 1   MTFDELNLNKPLLNALNDLGYTTPTTIQQKVFSVVMSGQDVCGIAQTGTGKTFAYLLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  + R   P+ LI+ PTREL  QV D  +K     NLTV  + GG+  +AQ  ++ 
Sbjct: 61  RQMQFSKDR--QPQLLIIVPTRELVVQVVDAVKKLTTYMNLTVVGVYGGVNMKAQTVEIM 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVL+ TPGR+ D    G L    I+ LVIDE D ML++GF   ++ +  L+P  RQ 
Sbjct: 119 QGLDVLVATPGRLADFMLGGTLKTKGIKKLVIDEFDEMLNLGFRAQLKVVLDLLPPKRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+TD++ ++  ++   P R+E     +  E I+         Y+K   L   L +
Sbjct: 179 LLFSATLTDDVDQLVNDYFNKPVRVEAAPMGTPLEKIDQSGYRVPNFYTKINLLTLLLNR 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +    K  +    ++                V  IH N  Q  R + ++NFK GT ++++
Sbjct: 239 NAAMTKVLVFVATKQLADQLFEQLESGFPDQVGVIHSNKAQNKRFEAVNNFKAGTYRILI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+ DV HV NFD+P+  ENYIHRIGRTGRA R G A + + +   +  +AI
Sbjct: 299 ATDIIARGIDVTDVSHVVNFDLPDLPENYIHRIGRTGRADREGIAVSFITESAREAQEAI 358

Query: 361 EKLIEKKVDWLN--------------------GDLSSLNPP-LEKIDIAQHNHARKNNPI 399
           E+L+ + +  L                          + PP  E +  A H  + KN  +
Sbjct: 359 EQLMNQPIPMLPLPENLVISDELTDDEKPKVHMKFIDVKPPKREDVGPAFHEKSAKNQKV 418

Query: 400 PQKSTGFDRRKKNYSSQKSHIPLKESE 426
             +    + +   Y      +  K+  
Sbjct: 419 NVRRNIAEEKMLKYGRPIKRVGGKKKR 445


>gi|30020539|ref|NP_832170.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|229127843|ref|ZP_04256829.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-Cer4]
 gi|29896090|gb|AAP09371.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|228655608|gb|EEL11460.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-Cer4]
          Length = 458

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 141/410 (34%), Positives = 229/410 (55%), Gaps = 11/410 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPECSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           EK +   +     +     P ++++D       +       ++   D R+
Sbjct: 360 EKTLGAPIQREIIE----QPKIKRVDENGKPVPKPAPKKSGQNRQRDSRE 405


>gi|330448509|ref|ZP_08312157.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492700|dbj|GAA06654.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 432

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 151/411 (36%), Positives = 228/411 (55%), Gaps = 11/411 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G S  +V A+ + GY K TP+Q K IP   +  D+  +AQTGTGKTA+F LP++
Sbjct: 1   MSFLSQGFSQDLVKALTEIGYEKLTPVQAKAIPQARRGADILALAQTGTGKTAAFSLPII 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
              I           R LIL PTRELA Q+A+N   Y K  ++T   + GG    +Q K+
Sbjct: 61  QKLIDTPKSKSRFNVRALILAPTRELAEQIANNISDYTKYTSITCTAVFGGKKMSSQEKR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE+G D+L+ TPGR+++H     + + N+E L+ DEADRMLDMGFI  I+ I   +    
Sbjct: 121 LEQGVDILVATPGRLIEHMELNNVSLANLEFLIFDEADRMLDMGFIGAIRVILDDIRTKP 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT + ++  ++ + L  P+RI   T +    T +      Y     +   L   
Sbjct: 181 QTMLFSATSSAQMNALAADILHKPQRI---TVTPENSTADTVSHVVYPVDEDRKTELLSE 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +   +  ++F N K+    L   L+  G      HG+  Q +R + L  FKEG  ++
Sbjct: 238 LIGKKNWRQVLVFVNYKETANQLVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+++AARGLDI ++ +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+   + 
Sbjct: 298 MVATEVAARGLDIQNLPYVVNYDMPFLAEDYVHRIGRTGRAGQKGNAISFVSREEELTLV 357

Query: 359 AIEKLIEKKV---DWLNGDLSSLNPPLEKIDIA---QHNHARKNNPIPQKS 403
            IE+LI +++     +  +  S +  LE++           RKNNP   +S
Sbjct: 358 QIERLIGQRIHRVQLIGYEPKSRDALLERMHSKPAFSQREGRKNNPTQDQS 408


>gi|330448349|ref|ZP_08311997.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492540|dbj|GAA06494.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 446

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 123/419 (29%), Positives = 196/419 (46%), Gaps = 10/419 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F DLGL P+++  +    + + T IQ   IP+ +   D+   ++TG+GKT +F+LP M
Sbjct: 1   MHFKDLGLDPRLLKKINHLAFDRATEIQHTAIPVAIAGKDILASSKTGSGKTLAFLLPAM 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +        R PR +IL PTRELA QV                L++GG  F  Q K L
Sbjct: 61  QRMYRSKPFTRRDPRVVILTPTRELAKQVFAQLRTLNAGTPYDGTLIVGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                 ++ TPGR+ DH       ++ +E+L++DEADRMLD+GF P ++ I       R+
Sbjct: 121 RNDPMFVVATPGRLADHLEHRSTHLDGLEMLILDEADRMLDLGFAPELRRINEAANHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  + +            ++   S  E  +         +      L   +
Sbjct: 181 QTLMFSATLDNQEVIEIASEMLDNPKRISIGHSAEEHKDITQRFILCDHLDHKQALLDKV 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIF   + +   L + L ++     A+ GN++Q  R  I+S F+    +++
Sbjct: 241 LETTDYNQVIIFTATRADTDRLTNELNERKLKAVALSGNLNQNQRNSIMSQFERNCHKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDI +V  V NFD+P  AE Y+HR+GRTGRAG  G A +LV  +D K    
Sbjct: 301 VTTDIASRGLDIDNVSLVINFDMPKHAEEYVHRVGRTGRAGNKGDAVSLVGPKDWKSFKN 360

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKIDIAQHNHARK----NNPIPQKSTGFDRR 409
           +E  + +++++     L G    L P  +K  + +     K        P+     D+R
Sbjct: 361 VEAFLNQRIEFSTIEGLEGKFKGLKPAPKKKFVKKKPTGEKVVAQKKQAPKAKRKVDKR 419


>gi|319648379|ref|ZP_08002595.1| DeaD protein [Bacillus sp. BT1B_CT2]
 gi|317389458|gb|EFV70269.1| DeaD protein [Bacillus sp. BT1B_CT2]
          Length = 481

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 136/407 (33%), Positives = 218/407 (53%), Gaps = 12/407 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  LS  +  A+   GY  PT +Q + IP  L++ DV   ++TG+GKTA+F +P+  
Sbjct: 5   SFKEYALSGDITKALDHLGYKHPTAVQSEVIPAALKKRDVVVKSRTGSGKTAAFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           + E    +   P+ LIL PTRELAAQV ++    G+   +  A + G   FE Q  +L++
Sbjct: 65  LTEWEENK---PQALILTPTRELAAQVKEDLTNIGRYKRIKAAAVYGKSSFERQKTELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  +G   +  ++ LVIDEAD+ML+MGFI  +  I   +P  R T+
Sbjct: 122 KCHIVVGTPGRVLDHIEKGTFPLEKLKYLVIDEADKMLNMGFIDQVGAIIRHLPEERLTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  ++++++S  ++++P +IE+    +T   IEH               L   L  
Sbjct: 182 LFSATFPEDVEQLSLQYMKDPLKIEMKAGGTTTADIEH---QLIIVDENDPFSLLVDLII 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + I+FC  ++ V  L   L   G+    IHG + Q  R  +++ F+ G  + ++A
Sbjct: 239 VENPDSCIVFCRTQEQVNELQRRLAGLGYPCAKIHGGMPQEDRFAVMNRFRRGAFRYLIA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+++P   E+Y+HR GRTGRAG  GKA TL +  +   I  IE
Sbjct: 299 TDVAARGIDIENITHVINYELPLDQESYVHRTGRTGRAGSRGKAITLASPREKGMIADIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
             I   +  +        P  E+I  A+    +K N  P+       
Sbjct: 359 DYIGFPIPIIE------TPSKEEIARAKAAFLKKINTKPELKQDKSE 399


>gi|309389357|gb|ADO77237.1| DEAD/DEAH box helicase domain protein [Halanaerobium praevalens DSM
           2228]
          Length = 529

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 153/470 (32%), Positives = 240/470 (51%), Gaps = 22/470 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L +S +++ AV + G+ + TPIQ   IP VL   D+ G AQTGTGKTA+F +P+L
Sbjct: 4   IKFNELNVSDEILKAVEEMGFEETTPIQTNAIPAVLNGQDIVGQAQTGTGKTAAFGIPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++      + P+ +IL PTRELA QV++  ++  K       L +  G     Q K L
Sbjct: 64  EEMDS---ENKNPQAIILCPTRELAIQVSEELKRLAKYKRRIYTLPVYGGQSIGRQIKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G  ++I TPGR++DH  R  L ++NI   V+DEAD MLDMGFI  I+ +   +P  RQ
Sbjct: 121 KKGVQIVIGTPGRVMDHIRRKTLKLDNINYFVLDEADVMLDMGFIDDIETVLRDIPDDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSAT+   ++++S+ + +N K +     +    T+       Y             +
Sbjct: 181 TLFFSATIPKSIKRLSKKYQKNSKFL---RVAHENLTVPSIDQYYYEIRRNDKLKALTRI 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  I+FCN +K V  L   L+ +G+   AIHG ++Q  R +++  F+ G I+++
Sbjct: 238 MDLSNPELAIVFCNTRKMVDELNIKLQARGYLSDAIHGGLNQNQRDRVMKKFRSGIIEVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  VFN+D+P   + Y+HRIGRTGRAG+ G+A   V  +DI  +  
Sbjct: 298 VATDVAARGIDVDDVEAVFNYDLPQDTDYYVHRIGRTGRAGKSGEAHNFVVGKDIYKLRD 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR--------KK 411
           I+K  + K+           P  + I  A+     +       S    +          +
Sbjct: 358 IQKYTKSKIKRAQI------PSQDDIQAAKFEQFSQELSAYMDSADLGKYIDLIEELIDE 411

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAF-MLPKNRGK 460
            YS+ +    L +     K +    EN   + G  G  P    L  N GK
Sbjct: 412 QYSAIEIAAALMKKSVDKKEEAQEPENSGQNFGDTGAEPGMVRLFINIGK 461


>gi|242241488|ref|ZP_04795933.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144]
 gi|242235031|gb|EES37342.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144]
          Length = 528

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 148/463 (31%), Positives = 233/463 (50%), Gaps = 23/463 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S K V  +   G+ +PTPIQ  +IP  L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 22  NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 81

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +  ++LIL PTRELA QVA+   ++ K   + V  + GG+P E Q K L+R
Sbjct: 82  KVVGQ----QGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKR 137

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L    I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 138 GPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 197

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     +     +  K           
Sbjct: 198 MLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFT--NFLD 255

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 256 VHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVA 315

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 316 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 375

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
                  D  N  + +L PP  K    +   AR+++   +      R  +    + S   
Sbjct: 376 -------DVNNRRMKALRPPHRK----EVLKAREDDIKDRVQNWMSRENEPRLQRISSEL 424

Query: 422 LKESE----KISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
           LKE +      S LQ+ ++ ND   +      P  +  KNR  
Sbjct: 425 LKEYDSTELVASLLQELVEANDEVEVQLTFEKP--LARKNRSS 465


>gi|119502760|ref|ZP_01624845.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080]
 gi|119461106|gb|EAW42196.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080]
          Length = 582

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 140/371 (37%), Positives = 209/371 (56%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   +   +   GY   TPIQ  TIPL+L+  DV G+AQTGTGKTA+F LP+L  
Sbjct: 11  FNSLGLPDFLQENLQSLGYETATPIQAGTIPLLLEGRDVVGLAQTGTGKTAAFALPILAN 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLER 121
           ++    +VR P+ L+L PTRELA QVA+ F  YG+      +  + GG     Q K L  
Sbjct: 71  IDV---KVRSPQALVLCPTRELAQQVAEAFRSYGRGMGGLRILSIFGGADMRQQLKSLRE 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LDH  R  + +  I  +V+DEAD ML MGFI  +  I +  P  R+  
Sbjct: 128 GTHIVVATPGRLLDHIERRSIDLTGINAVVLDEADEMLRMGFIDDVDTILAKTPKERKVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++ ++   L NP  I V   ++T E IE C+               + L +
Sbjct: 188 LFSATMPKRVRDIANKHLSNPAEISVAAAATTNENIEQCYWLAKGASK---LEALKRLLA 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  I+F   +++   +   L + G     ++G++DQ+ R++ +S+ K G + ++VA
Sbjct: 245 FEDTEGVIVFTRTRESTTVIAEQLRQTGLKASPLNGDMDQKMRLRTVSDLKSGALDVLVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+DVP   E Y+HRIGRTGRAGR GKA   V   + + +  IE
Sbjct: 305 TDVAARGLDVERITHVINYDVPFDEEAYVHRIGRTGRAGRKGKAILFVVPRERRMLRNIE 364

Query: 362 KLIEKKVDWLN 372
           +L  + +  + 
Sbjct: 365 RLTRQSIPEIK 375


>gi|170726556|ref|YP_001760582.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169811903|gb|ACA86487.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 449

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 147/445 (33%), Positives = 239/445 (53%), Gaps = 7/445 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ AV + GY  PTPIQ + IPL L+  ++   AQTG+GKTASFVLP+L
Sbjct: 1   MPFSKLGLSEPILNAVTELGYTTPTPIQAEAIPLALKGKNLIAAAQTGSGKTASFVLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L  G   R +  R L+L PTRELA QV  + E YGK+ NL    + GG+ +  Q + L
Sbjct: 61  ELLSAGETQRKKRARALVLTPTRELAVQVCKSIELYGKHLNLNAIAIYGGVDYAPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR+ D + +  +  +   +LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IDGVDIVVATPGRLRDLYTQRAIHFDETTLLVLDEADRMLDMGFIEDITKIIDTLPEQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT++ +++++++  + +  ++  N      E   +           K + L   L
Sbjct: 181 SLLFSATLSRQVRELAKETVCDAIQLSFNK---ENEAKPNIEQWITTVDKDKKSALLSHL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      +IF   K     L   LEK+G     IH    Q  R +IL++FK G I+ +
Sbjct: 238 INEQNWPQALIFIETKHGAAKLVSQLEKRGIEAECIHSGRTQAIREQILADFKSGKIRYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++ ++ARG+DI ++  V N+D+P  A+ Y+HRIGRTGRAG  G+A +LV+K+D K++  
Sbjct: 298 ISTGISARGIDIDELPLVINYDLPFPADEYVHRIGRTGRAGSAGEAISLVSKDDFKNLCM 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE  +      L   +     P +++ ++  N+  K+            +     + +S 
Sbjct: 358 IESRLNH---LLERRVIEGFSPRKEVPVSVLNYVPKSQRDEDGKRIKSEKSAKSGAVRSK 414

Query: 420 IPLKESEKISKLQQDIQENDADSLG 444
               +        +  + + +++  
Sbjct: 415 AKSSKPSNRLGDGKSTESSKSNTQA 439


>gi|57867605|ref|YP_189253.1| DEAD-box ATP dependent DNA helicase [Staphylococcus epidermidis
           RP62A]
 gi|293366046|ref|ZP_06612734.1| ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81673916|sp|Q5HME0|Y1688_STAEQ RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SERP1688
 gi|57638263|gb|AAW55051.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           epidermidis RP62A]
 gi|291319769|gb|EFE60127.1| ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329726161|gb|EGG62633.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU144]
 gi|329734135|gb|EGG70453.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU045]
          Length = 509

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 148/463 (31%), Positives = 233/463 (50%), Gaps = 23/463 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S K V  +   G+ +PTPIQ  +IP  L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +  ++LIL PTRELA QVA+   ++ K   + V  + GG+P E Q K L+R
Sbjct: 63  KVVGQ----QGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKR 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L    I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     +     +  K           
Sbjct: 179 MLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFT--NFLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 237 VHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 297 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
                  D  N  + +L PP  K    +   AR+++   +      R  +    + S   
Sbjct: 357 -------DVNNRRMKALRPPHRK----EVLKAREDDIKDRVQNWMSRENEPRLQRISSEL 405

Query: 422 LKESE----KISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
           LKE +      S LQ+ ++ ND   +      P  +  KNR  
Sbjct: 406 LKEYDSTELVASLLQELVEANDEVEVQLTFEKP--LARKNRSS 446


>gi|126173892|ref|YP_001050041.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125997097|gb|ABN61172.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 451

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 135/445 (30%), Positives = 215/445 (48%), Gaps = 11/445 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F D  L  +++ ++   G  +PT IQ + +P+ L   D+   ++TG+GKT +F+LP +
Sbjct: 1   MQFTDFSLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++       R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRVISTRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +    ++ TPGRI DH  +  L +N +E+LV+DEADRMLD+GF P ++ I       R+
Sbjct: 121 AKEPHFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAADHKRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +              V   ++ +E  +         +      L   L
Sbjct: 181 QTLMFSATLDHDEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDHKEALLARL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +T K  IIF   + +   L   L +QGF+  A+ G++ Q +R +I+  F  G  Q++
Sbjct: 241 LKDETHKQVIIFTATRPDTERLAAKLIEQGFATAALSGDLKQAARNQIMDQFARGQQQVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +   
Sbjct: 301 VTTDVASRGLDLLNVSLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNFKK 360

Query: 360 IEKLIEK-----KVDWLNGDLSSLNPPLEKI---DIAQHNHARKNNPIPQKSTGFDRRKK 411
           ++  + K      +  L    S L    ++     +A+   A+  +   + +T    R K
Sbjct: 361 VQVFLRKTFEISTIPGLEAKFSGLKSKAKQTPAKRVAKAELAKGKSKRAKAATPAPSRDK 420

Query: 412 NYSSQK--SHIPLKESEKISKLQQD 434
            + +       P+++    +KL QD
Sbjct: 421 RFITGVDIGDAPMRKKPAAAKLLQD 445


>gi|315125230|ref|YP_004067233.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas sp. SM9913]
 gi|315013743|gb|ADT67081.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas sp. SM9913]
          Length = 420

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 133/392 (33%), Positives = 214/392 (54%), Gaps = 2/392 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  ++P+VV  + ++G+   TPIQ K +P + +  D+ G AQTGTGKT +F+     
Sbjct: 5   KFSDFAIAPEVVAGLTESGFEYCTPIQAKCLPFICEGRDIAGQAQTGTGKTLAFLTATCH 64

Query: 62  IL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L +  +A  + PR LI+ PTRELA Q+  + +    + NL + L+ GG  +E Q  +LE
Sbjct: 65  RLLQSSKAPSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGEDYEKQRAQLE 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+LI T GR++D + +G   +N IE++V+DEADRM D+GFI  I+ +   +P T + 
Sbjct: 125 KGVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMFRRMPDTSER 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L    + T   +     F       E        +T +      +    +    L   L 
Sbjct: 185 LNLLFSATLSYRVQELAFEHMTN-PEHVQIEPDVKTGKRIQEELFHPSQEDKIKLLLTLI 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  I+F N K +   +   L+  G  V  + G+++Q+ R  IL+ F +G +  +V
Sbjct: 244 EEEWPEKAIVFANTKHSCETVYAWLKADGHRVGMLTGDVNQKKRQSILAQFSKGELDFLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL IP+V HVFNFD+P+  E+Y+HRIGRT RAG  G A +   ++   ++  I
Sbjct: 304 ATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTARAGASGHAISFACEQYAYNLHEI 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           E+ IE  +   + D S+L   L K  I +  +
Sbjct: 364 EEYIEHSIPLSHYDKSALLDDLTKPTIHRKRN 395


>gi|163801279|ref|ZP_02195178.1| ATP-dependent RNA helicase RhlE [Vibrio sp. AND4]
 gi|159174768|gb|EDP59568.1| ATP-dependent RNA helicase RhlE [Vibrio sp. AND4]
          Length = 472

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 172/452 (38%), Positives = 250/452 (55%), Gaps = 11/452 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSVPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L  G   R    R LIL PTRELAAQV ++   Y ++  L  A++ GG+    Q ++L
Sbjct: 61  ELLSNGPRVRANHVRALILTPTRELAAQVQESVFTYSQHLPLNSAVVFGGVKINPQMQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +++  +  + +E+LV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 RKGADVLVATPGRLMDLYSQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILDLLPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT +DE++ +++  + NP  I VN       T      + Y   +KK A +   L
Sbjct: 181 NLLFSATFSDEIRDLAKGLVNNPVEISVNP---ANSTARTVEQSIYPSDAKKKAPMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   L  +     AIHGN  Q +R K L++FK G I+++
Sbjct: 238 IKEGDWRQVLVFTRTKHGANRLAKFLIDEKLPAAAIHGNKSQSARTKALADFKSGAIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEMGKAISLVSALEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDIAQ-HNHARKNNPIPQKSTGFDRRKKNYS 414
           IE+LI++ +     +L+   P    P  K+D         K    P    G  +  +  +
Sbjct: 358 IERLIQQLLPR--KELAGFAPTNVVPESKLDTRPIKPKKPKKPKSPSAGGGSAQANERNA 415

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGFR 446
           + K         K  + +     N     G R
Sbjct: 416 ANKPKRRFNSDNKSGRGEAVKSGNGGKPSGNR 447


>gi|1170508|sp|P41381|IF4A8_TOBAC RecName: Full=Eukaryotic initiation factor 4A-8; Short=eIF-4A-8;
           AltName: Full=ATP-dependent RNA helicase eIF4A-8
 gi|475219|emb|CAA55639.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
 gi|475221|emb|CAA55640.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
          Length = 413

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 192/377 (50%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G   +   + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 101 QLDYG---LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAA 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + + + V+DEAD ML  GF   I +I  ++P   Q  
Sbjct: 158 GVHVIVGTPGRVFDMLRRQSLRPDYLRMFVLDEADEMLSRGFKDQIYDIFQMLPTKVQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E   ++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALDITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V  +D + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     ++ L  +++ L
Sbjct: 396 KFYNVIIEELPSNVADL 412


>gi|222110266|ref|YP_002552530.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221729710|gb|ACM32530.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
          Length = 484

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 179/470 (38%), Positives = 253/470 (53%), Gaps = 24/470 (5%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
           + L L+  +  AV + GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L  L
Sbjct: 6   STLALAEPLKRAVAEMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRL 65

Query: 64  EKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            K       P        +L PTRELA QVA     Y K   L   ++ GG+  + Q  +
Sbjct: 66  LKHENSSASPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQTIE 125

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P  R
Sbjct: 126 LKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQR 185

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            TLLFSAT + E+++++ ++LQ+P  IEV  P+ TA T+E  F A      ++     + 
Sbjct: 186 TTLLFSATFSPEIKRLAGSYLQDPITIEVARPNETASTVEQRFFAVDGDDKRRA---IRH 242

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + ++  +K   IF N K     L  SLE+ G    A+HG+  Q  R+K L  FK G + L
Sbjct: 243 VLNERGLKQAFIFVNSKLGCARLARSLERDGLKTAALHGDKSQDERLKALDAFKSGEVDL 302

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V +D+AARGLDI DV  VFN+DVP  AE+Y+HRIGRTGRAG  G A TL A  D + + 
Sbjct: 303 LVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLAASSDTRLVA 362

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD--RRKKNYSSQ 416
            IEKLI+KK++    +L    P        ++N  R+         G     R +  S+ 
Sbjct: 363 DIEKLIKKKIELEPLELQEDRP------RGRYNDGRRAWGGDDSGEGAPAAPRSRERSAY 416

Query: 417 KSHIPLKESEKISKLQQDIQ--------ENDADSLGFRGNMPAFMLPKNR 458
           +S           K  +           E    +   RG + A + PK +
Sbjct: 417 RSAPAASRDPFFDKPYEASTSAGASASWEVAPKASPARGGISANIKPKRK 466


>gi|42521860|ref|NP_967240.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39574390|emb|CAE77894.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 505

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 151/373 (40%), Positives = 219/373 (58%), Gaps = 5/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L   +  ++ +AGY  PTPIQ+  IP++L+ HD+ GIAQTGTGKTA+F LP+L 
Sbjct: 5   KFTDLPLIAPLQFSLKEAGYETPTPIQLAAIPVILEGHDLLGIAQTGTGKTAAFSLPILQ 64

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L K   ++    PR LIL PTRELA Q+ +N E Y K+ N+  A++ GG+    Q + L
Sbjct: 65  NLSKHTRKIEPKSPRCLILTPTRELAIQIHENIEAYSKHLNMKHAVIFGGVGQNPQVRAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D+LI TPGR++D   +  L ++ +EI V+DEADRMLDMGF+  I+ I  L+P  R 
Sbjct: 125 QGGVDILIATPGRLMDLHGQKHLKLDRVEIFVLDEADRMLDMGFMQDIKKILPLLPQKRH 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSATM  E+Q ++   L NPK++EV   SSTAE +E   +                +
Sbjct: 185 NLFFSATMPHEIQTLANRILVNPKKVEVTPVSSTAEKVEQRVMFVDKPQKLDL---LLHI 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +++   ++F   K     +   L K G +   IHG+  Q  R + L  FK G ++++
Sbjct: 242 LKDESLSKVLVFVQMKYGANRVVDRLTKAGVAAAGIHGDKSQNQRQRALEEFKNGDVRVL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV N ++P+  E+Y+HRIGRT RAG  G + +    E+   + A
Sbjct: 302 VATDIAARGIDIDGITHVINLELPHIPESYVHRIGRTARAGATGISISFCTAEERSFLFA 361

Query: 360 IEKLIEKKVDWLN 372
           IEK    KV  + 
Sbjct: 362 IEKTTRTKVTVVE 374


>gi|327485295|gb|AEA79701.1| ATP-dependent RNA helicase VCA0061 [Vibrio cholerae LMA3894-4]
          Length = 448

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 124/394 (31%), Positives = 189/394 (47%), Gaps = 6/394 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR LIL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 61  HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG   ++ TPGR+ DH +   L +  +E LV+DEADRMLD+GF   ++ I +     R+
Sbjct: 121 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D             +   +     + E  +         +      L   +
Sbjct: 181 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  IIF   + +   L   L +      A+ GN++Q  R  I+  F+    +++
Sbjct: 241 LADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDIP V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D +    
Sbjct: 301 VTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKR 360

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKIDIA 388
           +E  +++++ +     L G    L P   K   A
Sbjct: 361 VEAFLQQEIQFEVLAGLEGKFKGLKPRQVKPKAA 394


>gi|312969491|ref|ZP_07783693.1| ATP-dependent RNA helicase rhlB [Escherichia coli 2362-75]
 gi|312286038|gb|EFR13956.1| ATP-dependent RNA helicase rhlB [Escherichia coli 2362-75]
          Length = 421

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 138/413 (33%), Positives = 207/413 (50%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPGRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGAPRNRRRSG 421


>gi|311747453|ref|ZP_07721238.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1]
 gi|126574812|gb|EAZ79183.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1]
          Length = 580

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 141/395 (35%), Positives = 221/395 (55%), Gaps = 8/395 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DLG+S +++ +V + GY +P+ IQ + IP VL   DV G AQTGTGKTA+F +P++
Sbjct: 5   LKFSDLGISSEILKSVEEMGYTQPSQIQSQAIPFVLDGRDVIGQAQTGTGKTAAFGIPII 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
            +++    +V+     IL PTRELA QV    +K  K +    ++ I  G   + Q + L
Sbjct: 65  DLVDPDFNKVQAV---ILCPTRELAVQVEGEIQKLAKYHRKINSVAIYGGESIDRQIRVL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  +++ TPGR+ DH NRG L + N  I+V+DEAD MLDMGF   I+ I   +P  RQ
Sbjct: 122 RKGVQIVVGTPGRVQDHINRGTLKLENTGIIVLDEADEMLDMGFRDDIEAILQEMPEKRQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+ FSATM   +  ++  +  NP+ I+V     T + IE  F         +        
Sbjct: 182 TVFFSATMAKPILDLTRKYQNNPEIIKVAKKELTVDRIEQVFYEVKPSLKLELMARL--- 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +     ++FCN K+       +L  +G    A+HG++ Q  R K+++ F++G   ++
Sbjct: 239 MNVNNYALSVVFCNTKRMTDEATEALGSRGILAEALHGDLSQAQRDKVMNKFRKGLCTVL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           VA+D+AARG+D+ +V  VFNFD+P   E+Y+HRIGRTGRAG+ GKA   V  + D   I 
Sbjct: 299 VATDVAARGIDVDNVEAVFNFDLPLDDESYVHRIGRTGRAGKSGKAINFVTGRRDFGKIR 358

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
            +E+  +  +  ++    S    L+K    +  H 
Sbjct: 359 DLERFTKASIAKMDPPSVSDLIELKKAQFVKDVHT 393


>gi|1170511|sp|P41382|IF410_TOBAC RecName: Full=Eukaryotic initiation factor 4A-10; Short=eIF-4A-10;
           AltName: Full=ATP-dependent RNA helicase eIF4A-10
 gi|475213|emb|CAA55642.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
 gi|475216|emb|CAA55641.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
          Length = 413

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 195/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+         + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 101 QLDYSLVE---CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V K+D + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     ++ L  +++ L
Sbjct: 396 KFYNVVIEELPANVADL 412


>gi|145601979|ref|XP_001403327.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|152013478|sp|A4QSS5|DBP2_MAGO7 RecName: Full=ATP-dependent RNA helicase DBP2
 gi|145010431|gb|EDJ95087.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 548

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 132/382 (34%), Positives = 210/382 (54%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 126 TFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 185

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 186 HINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDL 245

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 246 SRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 305

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL- 238
           TL++SAT   E++ ++ +FLQ+  ++ + +   +A       V   ++  K+  +++ + 
Sbjct: 306 TLMWSATWPKEVRNMAADFLQDFIQVNIGSLDLSANHRITQIVEVVSESEKRDRMIRHME 365

Query: 239 --LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             +  +D+    +IF   K+    +   L + G+   +IHG+  Q  R  +L  FK G  
Sbjct: 366 KVMDGKDSKNKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKS 425

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +MVA+D+A+RG+D+ ++ HV N+D PN +E+YIHRIGRTGRAG  G A T    E+ K 
Sbjct: 426 PIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSKQ 485

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
              +  ++++    ++  L+ +
Sbjct: 486 ARDLLGVLQEAKQEIDPRLAEM 507


>gi|78355199|ref|YP_386648.1| DEAD/DEAH box helicase-like [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217604|gb|ABB36953.1| DEAD/DEAH box helicase-like protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 572

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 136/367 (37%), Positives = 221/367 (60%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL LS +V+ A+ D G+ + +PIQ  +IP +L   DV G AQTGTGKTA+F +P+L  
Sbjct: 51  FADLPLSKEVLRAIQDMGFEEASPIQTMSIPHILAGKDVVGQAQTGTGKTAAFGIPILER 110

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    R +  + ++L PTRELA QVA+      ++      + +  G P E Q + L R
Sbjct: 111 IDP---RDKATQAVVLCPTRELAIQVAEEVTTLARHKRGISVVPVYGGQPIERQVRALRR 167

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH +RG + +N ++++V+DEAD MLDMGF   I+ I   +    QT+
Sbjct: 168 GAQVIVGTPGRVMDHLDRGTMDINTVKMVVLDEADEMLDMGFRDDIEFILGKMEQEVQTV 227

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   +  +++ +L+ P+ ++V     T  +IE  +                 +  
Sbjct: 228 FFSATMPRAILDMAQRYLKEPEFLKVTQKLLTVPSIEQIYFEVRPFQK---LESLCRVLD 284

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  I+FC+ K  V  L  +L+ +G+    +HGN++Q  R ++++ F++G I ++VA
Sbjct: 285 VYNPKLTIVFCSTKVGVDELATNLQARGYDADGLHGNLNQAQRDRVMNRFRKGNIDILVA 344

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ +V  V N+D+PN  E+Y+HRIGRTGRAGR G+AFT V+  +   +  I+
Sbjct: 345 TDVAARGIDVENVEAVVNYDIPNDVESYVHRIGRTGRAGRAGRAFTFVSGREFYKLRDIK 404

Query: 362 KLIEKKV 368
           +  + ++
Sbjct: 405 RFTKAQI 411


>gi|303231103|ref|ZP_07317843.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514234|gb|EFL56236.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 432

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 147/447 (32%), Positives = 238/447 (53%), Gaps = 19/447 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+  +++  +   G  +PTPIQ ++IP+V + +D+   AQTGTGKT +F+LP+L 
Sbjct: 3   SFKSLGVCDELISTLQKQGIKEPTPIQEQSIPIVFKGNDIIAKAQTGTGKTLAFLLPILQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +      V   + LI+ PTREL  Q++D  +  G   ++ +  LIGG   E+Q ++L R
Sbjct: 63  RIHT---DVHQEQVLIIAPTRELIKQISDEAKVLGAVLDVDILPLIGGKTIESQLQQLGR 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+LDH  RG L +++I  +V+DEAD+ML MGF+P I+N+       RQ L
Sbjct: 120 RPHVILGTPGRLLDHAKRGSLHLDSIRRVVLDEADQMLHMGFLPDIENLIGQTDANRQLL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ D+++ +++ ++  P  +       T ++I+        +           +  
Sbjct: 180 LFSATIPDKIRNLAKAYMTKPVSVTAEGKHITLDSIDQRVYMMNPEDK---TPRLIKMIQ 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I+FCN+++  + L + L   G ++  +HG++ Q  R +IL +F +   Q++VA
Sbjct: 237 EDNPYLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI  + HV+N+DVP+  + YIHRIGRTGRAG  G A T     D   +  IE
Sbjct: 297 TDIAARGIDIEGITHVYNYDVPHDVDYYIHRIGRTGRAGNSGIAVTFATPADESWLRRIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           + I+  +     D            I    +A    P  +K+T   +   +Y S K+   
Sbjct: 357 RAIQATLTKYTKDGQ----------IKTKGNA-STAPKRKKATSKPKITSSYQSTKAKAH 405

Query: 422 LKESEKISKLQQDIQENDADSLGFRGN 448
                K S  +Q  +       G RGN
Sbjct: 406 KARGHKGSNTRQ--RRASTSQTGRRGN 430


>gi|262283179|ref|ZP_06060946.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA]
 gi|262261431|gb|EEY80130.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA]
          Length = 523

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 145/373 (38%), Positives = 226/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQA---LVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L +N IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++                  
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|54296291|ref|YP_122660.1| hypothetical protein lpp0320 [Legionella pneumophila str. Paris]
 gi|53750076|emb|CAH11468.1| hypothetical protein lpp0320 [Legionella pneumophila str. Paris]
          Length = 414

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 160/417 (38%), Positives = 235/417 (56%), Gaps = 14/417 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  L L   +  AV + GY  PT IQ+K IPL+L  HD+ G AQTGTGKTASFVLP+ 
Sbjct: 1   MSFKQLALIEPLNRAVSELGYTNPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               ++ +      + LIL PTRELA Q  ++  +YGK   L  A++ GG+    Q K+L
Sbjct: 61  QKASQQTQTSRNRAKVLILTPTRELAIQAHESIIQYGKYLTLRSAVIYGGVKSHNQIKQL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++L+ TPGR+LD + +G +  + I+ LV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 DSGLEILVATPGRLLDLYQQGAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT T E++ ++ N L     I++   ++  +TI+    +    +           
Sbjct: 181 NLLFSATFTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDGNHKLALLSHLLHK 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       ++F   K     L   L +      AIHGN  Q  R K L++FK G +Q +
Sbjct: 241 NNW---GQTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKVQTL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI  +  V NFD+P+  E+Y+HRIGRTGRAG  G A +LV+ E+IK + +
Sbjct: 298 IATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKLLLS 357

Query: 360 IEKLIEKKVDWLNG-------DLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           IEKLI +K++ +         + S L +  ++K   A      K N   +  T F++
Sbjct: 358 IEKLINQKLERIKIKDFEFLHNFSDLVSAKIQK--FAPPKAGYKGNISRKSRTAFNK 412


>gi|302823844|ref|XP_002993570.1| hypothetical protein SELMODRAFT_270055 [Selaginella moellendorffii]
 gi|300138582|gb|EFJ05345.1| hypothetical protein SELMODRAFT_270055 [Selaginella moellendorffii]
          Length = 434

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 137/430 (31%), Positives = 213/430 (49%), Gaps = 7/430 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+  ++V A    G+  PTPIQ++ +PL LQ  D+ G+AQTG+GKTA+F LP+L 
Sbjct: 9   SFGELGVREELVDACTKLGWKAPTPIQVEALPLALQGRDLIGLAQTGSGKTAAFALPILQ 68

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +           +L PTRELA Q+++ FE  G    +    ++GG+    Q   L +
Sbjct: 69  ALFQQCHPFFA---CVLSPTRELAIQISEQFEALGSQIGVRSVAIVGGVSMVDQAVALGK 125

Query: 122 GADVLICTPGRI-LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+     N     + N++ LV+DEAD++L   F   +  I  +VP  R+T
Sbjct: 126 NPHIVVATPGRLLDHLTNTKGFSLRNVKYLVLDEADKILHNDFEKEVDEILKVVPRERKT 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT+++ K+    L+NP ++EV++  +TA T+           +K        L 
Sbjct: 186 FLFSATMTNKVAKLQRACLRNPTKVEVSSKYTTALTL---KQEYVFVPAKHKDCYFVFLL 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      ++F     +   L   L   GF    I G + Q  R   L  FK G   L++
Sbjct: 243 NEMAGSTAMVFTRTCDSTRRLALILRSLGFGAIPISGQMSQSKRSGALLKFKAGDRNLLI 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR G+A ++V + D+     I
Sbjct: 303 CTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGRAISIVTQYDVDLYKRI 362

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI   +         +    E++  AQ   A              RR  +        
Sbjct: 363 EDLIGMTLPEFPAKADEVLLLEERVSEAQRLAAMHIREKDASKKSKKRRNGDDDEADDGG 422

Query: 421 PLKESEKISK 430
            +    K SK
Sbjct: 423 YMAGKRKQSK 432


>gi|159466510|ref|XP_001691452.1| eukaryotic initiation factor 4A-like protein [Chlamydomonas
           reinhardtii]
 gi|158279424|gb|EDP05185.1| eukaryotic initiation factor 4A-like protein [Chlamydomonas
           reinhardtii]
          Length = 413

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 192/377 (50%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+ KP+ IQ K I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  SFDQMNLHENLLRGIYAYGFEKPSAIQSKGIVPFTKGLDVIQQAQSGTGKTATFCAGILN 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + L+L PTRELA Q+       G    +     +GG       + L  
Sbjct: 101 NIDYNSNE---CQALVLAPTRELAQQIEKVMRALGDFLQVKCHACVGGTSVREDARILGA 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  ++I++  +DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVQVVVGTPGRVFDMLRRRYLRADSIKMFTLDEADEMLSRGFKDQIYDIFQLLPPKLQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATLPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   + ++  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFANTRRKVDWLTDKMRERDHTVSATHGDMDQNTRDVIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V K+D + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLQDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ L  +++ L
Sbjct: 396 RFYNTVIEELPSNVADL 412


>gi|153215146|ref|ZP_01949844.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
 gi|124114870|gb|EAY33690.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
          Length = 464

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 179/468 (38%), Positives = 264/468 (56%), Gaps = 22/468 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRAYQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C         KK   +   L
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADV---KKKPDMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 238 VKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           IE+L +  +  +N  L+   P    P  K+D           P+  K     ++ +    
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNQLPESKLDT---------RPLKPKKPKKPKKVEGAGE 406

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
            K  +   + +   + Q   Q   A      G   A   P NR + + 
Sbjct: 407 NKGSVAENKPKAGHRGQPTGQARTAK---KGGTHSAPKKPANRPRRSS 451


>gi|127511701|ref|YP_001092898.1| ATP-dependent RNA helicase SrmB [Shewanella loihica PV-4]
 gi|126636996|gb|ABO22639.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 419

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 209/388 (53%), Gaps = 4/388 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L   ++ ++   G++ PT IQ +TIPL L+  D+   A TGTGKTASF+LP L
Sbjct: 14  MQFEDFHLDDTLLESLKAMGHLAPTTIQQQTIPLALEHKDILARAPTGTGKTASFLLPAL 73

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L     R      + IL PTRELA+QV            L +A++ GG+P+  Q + L
Sbjct: 74  QHLLDFPRRYSGQARVLILAPTRELASQVHRYASHLATGLGLDIAIITGGVPYAPQEQAL 133

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   D+L+ TPGR++++ ++      ++EILV+DEADRMLDMGF   +Q+I       + 
Sbjct: 134 KENIDILVATPGRLMEYLDKELFDAQSVEILVLDEADRMLDMGFSSAVQSIAIEAQQRKH 193

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT+           L       + T    +E  +       A   +    L   +
Sbjct: 194 NMLFSATLEGGGVSRFAEMLLTNPVT-IETKPPRSEKAKIHQWMHLADDKEHKFALLCDI 252

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++ +   I+F   ++ V +L   L++ G     + G+++Q++R + L  F +G + ++
Sbjct: 253 LKREEVSRAIVFVKTREVVASLEGQLQQAGIHCAFMRGDMEQKARFQALGRFTKGEVNVL 312

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI  + HV NFD+P  A+ Y+HRIGRTGRAG  G A +LV   D++ +  
Sbjct: 313 LATDVAARGIDIDGITHVINFDMPRSADTYVHRIGRTGRAGNKGTAISLVEAHDMRVVAK 372

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
           IE+ IE+ +     D  SL P  ++  +
Sbjct: 373 IERYIEQPLKRRVID--SLRPKHKEAKV 398


>gi|312218365|emb|CBX98311.1| similar to ATP-dependent RNA helicase dhh1 [Leptosphaeria maculans]
          Length = 511

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 126/426 (29%), Positives = 202/426 (47%), Gaps = 12/426 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 50  LEFEDFFIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 109

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     ++   + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 110 ERV---NPKISKTQALILVPTRELALQTSQVCKMLGKHLGINVMVSTGGTGLKDDIIRLS 166

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +G   ++  +  V+DEAD++L   F P ++ +    P  RQ 
Sbjct: 167 DPVHIIVGTPGRILDLAGKGVADLSACQTFVMDEADKLLSPEFTPVVEQLLGFHPKDRQV 226

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F                 T+            K+       L 
Sbjct: 227 MLFSATFPIVVKS----FKDKHMNSPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 282

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 283 NKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLV 342

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 343 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYRI 402

Query: 361 EKLIEKKVDWLNGDLSS---LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           E+ +  ++  +   +     +    E I     N  R     PQ   G  R   N SS+ 
Sbjct: 403 EQELGTEIQPIPQVIEKNLYVYESPESIPRPMSNSQRPQGQ-PQDQDGV-RGSSNQSSRG 460

Query: 418 SHIPLK 423
           ++   +
Sbjct: 461 NYRGAR 466


>gi|224073500|ref|XP_002304104.1| predicted protein [Populus trichocarpa]
 gi|118484805|gb|ABK94270.1| unknown [Populus trichocarpa]
 gi|222841536|gb|EEE79083.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 195/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  TFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G   +   + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 101 QLDYG---LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+   V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLETLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLFDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     ++ L  +++ L
Sbjct: 396 KFYNVVIEELPSNVADL 412


>gi|310800761|gb|EFQ35654.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 530

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 114/377 (30%), Positives = 185/377 (49%), Gaps = 7/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +  L   ++  + +AG+ +P+PIQ + IP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFENFQLKRDLLMGIFEAGFERPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPAL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +V   + LIL PTRELA Q +   +  GK+  + V +  GG        +L+
Sbjct: 107 EKI---NPKVSKIQALILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIIRLQ 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +    ++   + ++DEAD++L + F P I+ +    P  RQ 
Sbjct: 164 DPVHIVVGTPGRILDLAGKNVADLSECSMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQV 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F                 T+            K+       L 
Sbjct: 224 MLFSATFPLSVKD----FSDKNMVSPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q++R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMAQQARNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNI 399

Query: 361 EKLIEKKVDWLNGDLSS 377
           EK +  ++  +   +  
Sbjct: 400 EKDLGTEIQPIPASIDK 416


>gi|164687595|ref|ZP_02211623.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM
           16795]
 gi|164603369|gb|EDQ96834.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM
           16795]
          Length = 541

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 140/394 (35%), Positives = 228/394 (57%), Gaps = 9/394 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL +S ++  ++ + G+ +P+PIQ ++IP++L   DV G AQTGTGKTA+F +P+L 
Sbjct: 5   KFEDLPISDEIKRSIAEIGFEEPSPIQAQSIPVILSGKDVIGQAQTGTGKTAAFSIPILE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     ++     +L PTRELA QV+    K GK  +    L +  G P + Q K L+
Sbjct: 65  KVDPNNKHLQAI---VLCPTRELAIQVSKEIRKLGKFKSGIKTLPVYGGQPIDRQIKALK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  V+I TPGR++DH NR  L +++++++V+DEAD MLDMGF   I+ I +  P  RQT
Sbjct: 122 SGVQVVIGTPGRVIDHINRKTLKLDDVKMVVLDEADEMLDMGFREDIELILNQTPIERQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM  E+ ++++ +   P+ I+V     T   I+  ++ T      +         
Sbjct: 182 TFFSATMPKEILELTKLYQHEPEIIKVVRKELTVPNIKQFYIETRRANKLEVLCRL---I 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  ++FCN K+    L   L+ +G+   A+HG++ Q  R  ++  F++GTI ++V
Sbjct: 239 DVYNPKLSVVFCNTKRGSDELVSELQARGYFADALHGDLKQTQRDIVMDKFRQGTIDILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G +F+ V  ++++ +  I
Sbjct: 299 ATDVAARGIDVDDVDMVFNYDLPQDEEYYVHRIGRTGRAGREGVSFSFVYGKEMRKMRDI 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           E+  + K+  +   + ++    EK   A     +
Sbjct: 359 ERYTKCKL--VKHSIPTIADVEEKKVAAFFKQVK 390


>gi|118497423|ref|YP_898473.1| ATP-dependent RNA helicase [Francisella tularensis subsp. novicida
           U112]
 gi|195536115|ref|ZP_03079122.1| dead/deah box helicase domain protein [Francisella tularensis
           subsp. novicida FTE]
 gi|118423329|gb|ABK89719.1| ATP-dependent RNA helicase [Francisella novicida U112]
 gi|194372592|gb|EDX27303.1| dead/deah box helicase domain protein [Francisella tularensis
           subsp. novicida FTE]
          Length = 441

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 151/403 (37%), Positives = 235/403 (58%), Gaps = 8/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DL L+  +  A+   GY KPTPIQ + IP+VL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MKFSDLDLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  +  +++   V+DEADRMLDMGFI  ++ I  L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++  FL NP+ +  +  ++T + I                +     
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   ++F   K     +   L   G S  AIHGN  Q +R K L++FK   I ++
Sbjct: 238 IKDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+PN AE+Y+HRIGRTGRAG+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           IE LI   +    L G  ++ N P+  +  +    A+K + + 
Sbjct: 358 IEHLIGHLLPRAELEGFEATHNVPITSM--SHKTKAKKIDEVK 398


>gi|121601761|ref|YP_989161.1| DEAD/DEAH box helicase domain-containing protein [Bartonella
           bacilliformis KC583]
 gi|120613938|gb|ABM44539.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain
           protein [Bartonella bacilliformis KC583]
          Length = 471

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 151/434 (34%), Positives = 230/434 (52%), Gaps = 7/434 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--L 60
           F  LGLS  ++  +L+AG  +P PIQ + IP++L+  D+ GIAQTG+GKT +F LP+   
Sbjct: 19  FTKLGLSTLLIKNLLNAGISEPKPIQEQAIPVMLKGRDILGIAQTGSGKTLAFGLPILSQ 78

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +    +   +  R LIL PTRELA Q+ +      K  +L+  L++GG+    Q K++ 
Sbjct: 79  ILTFGDKRSPKTARALILVPTRELAVQIEEMISAVVKGAHLSTCLIVGGVSRFKQIKRMG 138

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV+I TPGR++D      + ++    LV+DEADRMLDMGFI  ++ I  L+    QT
Sbjct: 139 AGVDVVIATPGRLMDLVREKFVDLSRSRFLVLDEADRMLDMGFINDVRRIAKLLCKEHQT 198

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+++++   L  P +IEV    +TA  I            +          
Sbjct: 199 ALFSATMPKEIKELANGLLNEPVKIEVVPQGTTAVEITQKLYCVPKNEKRNILNRLL--- 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               + + I+F   K     +   L+  G +V  IHGN  Q +R   L  F+EG+++++V
Sbjct: 256 VNPDLISVIVFIRTKHGADAITRYLKNMGHAVATIHGNKSQNARQSALKAFREGSVKVLV 315

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+DIP V HV N+D+P  AE+Y+HRIGRTGR G  G A TL  +E +   + A
Sbjct: 316 ATDIAARGIDIPGVSHVINYDLPEDAESYVHRIGRTGRNGASGDAITLFDEESEESRLRA 375

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR-RKKNYSSQKS 418
           +E++I  K+   N  L     P +   +             +KS  + +   ++  + K 
Sbjct: 376 VERIIRMKLTRENVPLQYETYPEKPFTLESDEKENSKERRFKKSKSYKQTSNRSDRAVKL 435

Query: 419 HIPLKESEKISKLQ 432
           H     S K  K +
Sbjct: 436 HTRESSSNKSEKHE 449


>gi|291406391|ref|XP_002719530.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 3
           [Oryctolagus cuniculus]
          Length = 614

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 140/469 (29%), Positives = 230/469 (49%), Gaps = 7/469 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 154 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 213

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 214 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N  L  L                  R++     K  GF+  +   +
Sbjct: 454 SDLISVLREANQAINPKLLQLVEDRGAGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 513

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLG-FRGNMPAFMLPKNRGKLN 462
             + +  L + +  +K Q  +    + + G F  N  +  L  +    N
Sbjct: 514 YDRGYSSLLKRDFGAKTQNGVYSAASYTNGSFGSNFVSAGLQTSFRTGN 562


>gi|194387478|dbj|BAG60103.1| unnamed protein product [Homo sapiens]
          Length = 603

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 135/441 (30%), Positives = 221/441 (50%), Gaps = 6/441 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 83  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 142

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 143 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 202

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 203 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 262

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 263 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 322

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 323 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 382

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 383 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 442

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N  L  L                  R++     K  GF+  +   +
Sbjct: 443 SDLISVLREANQAINPKLLQLVEDRGSGRTRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 502

Query: 415 SQKSHIPLKESEKISKLQQDI 435
             + +  L + +  +K Q  +
Sbjct: 503 YDRGYSSLLKRDFGAKTQNGV 523


>gi|27468597|ref|NP_765234.1| ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228]
 gi|81843521|sp|Q8CRP6|Y1679_STAES RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SE_1679
 gi|27316144|gb|AAO05278.1|AE016749_224 ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228]
          Length = 509

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 148/463 (31%), Positives = 233/463 (50%), Gaps = 23/463 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S K V  +   G+ +PTPIQ  +IP  L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +  ++LIL PTRELA QVA+   ++ K   + V  + GG+P E Q K L+R
Sbjct: 63  KVVGQ----QGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKVLKR 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L    I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     +     +  K           
Sbjct: 179 MLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFT--NFLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 237 VHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 297 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
                  D  N  + +L PP  K    +   AR+++   +      R  +    + S   
Sbjct: 357 -------DVNNRRMKALRPPHRK----EVLKAREDDIKDRVQNWMSRENEPRLQRISSEL 405

Query: 422 LKESE----KISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
           LKE +      S LQ+ ++ ND   +      P  +  KNR  
Sbjct: 406 LKEYDSTELVASLLQELVEANDEVEVQLTFEKP--LARKNRSS 446


>gi|25027815|ref|NP_737869.1| putative cold shock DEAD-box protein A [Corynebacterium efficiens
           YS-314]
 gi|259506205|ref|ZP_05749107.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
 gi|23493098|dbj|BAC18069.1| putative cold shock DEAD-box protein A [Corynebacterium efficiens
           YS-314]
 gi|259166182|gb|EEW50736.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
          Length = 736

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 144/371 (38%), Positives = 221/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  +V+ AV   G+  P+PIQ +TIP+++  HDV G+AQTGTGKTA+F LP+L+ 
Sbjct: 107 FDALGLPQQVLDAVRKVGFETPSPIQAQTIPVLMDGHDVVGLAQTGTGKTAAFALPVLSR 166

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++K    VR P+ L+L PTRELA QVAD+F+ +  +      L I  G  +  Q   L R
Sbjct: 167 IDKS---VRSPQALVLAPTRELALQVADSFQSFADHLGGLNVLPIYGGQAYGIQLSGLRR 223

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  +G L ++ +  LV+DEAD ML+MGF   ++ I +  P  +Q  
Sbjct: 224 GAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILADTPDDKQVA 283

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++++S+ +L NP+ I V + + TA  I   F++      +        +  
Sbjct: 284 LFSATMPNGIRRLSKQYLNNPQEISVKSETRTATNITQRFLSVAH---RNKMDALTRILE 340

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K     +   L  +GFS  AI+G+I Q  R + +   K+G + ++VA
Sbjct: 341 VTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 400

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+PN  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 401 TDVAARGLDVERISHVLNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 460

Query: 362 KLIEKKVDWLN 372
           +     +  + 
Sbjct: 461 RATNAPLVEME 471


>gi|119775874|ref|YP_928614.1| ATP-dependent RNA helicase SrmB [Shewanella amazonensis SB2B]
 gi|119768374|gb|ABM00945.1| superfamily II DNA and RNA helicase-like protein [Shewanella
           amazonensis SB2B]
          Length = 613

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 137/388 (35%), Positives = 218/388 (56%), Gaps = 4/388 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F D  L P+++ ++   G+  PT IQ  TIPL +++ D+   A TGTGKTASF+LP +
Sbjct: 1   MLFEDFQLDPELLESLKAMGHNTPTTIQRMTIPLAMEQRDILARAPTGTGKTASFLLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +++  R R   PR L+L PTRELA+Q+         N  L + L+ GG+P+  Q + L
Sbjct: 61  QHLIDFPRRRPGQPRVLVLTPTRELASQIHRYASHLATNLELDIKLITGGVPYGPQEEML 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   D+L+ TPGR+L++ ++G      +E+LVIDEADRMLDMGF   ++ I       +Q
Sbjct: 121 KSNVDILVATPGRLLEYLDKGHFSAELVEVLVIDEADRMLDMGFGEVVKTIAVEASGRKQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT+ +     S       + + V +    +E  +       A        L   L
Sbjct: 181 AMLFSATL-EGGGVGSFARELLNEPMFVESEPPRSEKAKIHQWIHLADDKDHKFALLTHL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+ +K  I+FC  +  V +L   L++ G +   + G++DQ+ R + L  F +G + ++
Sbjct: 240 LKQEEVKRAIVFCKTRDVVASLEGQLQQAGIACAFMRGDMDQKKRFQALGRFTKGEVNVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI D+ HV NFD+P  A+ Y+HRIGRTGRAG  G A +LV   D++ +  
Sbjct: 300 LATDVAARGIDIEDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDMRILGK 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
           +E+ IE+ +      +  L P  ++  +
Sbjct: 360 VERYIEQPLKR--RVIEELRPKHKEAKV 385


>gi|212636318|ref|YP_002312843.1| DEAD box helicase [Shewanella piezotolerans WP3]
 gi|212557802|gb|ACJ30256.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 446

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 162/452 (35%), Positives = 254/452 (56%), Gaps = 12/452 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F+ LGLS  +V AV + GY  PTPIQ K+IP++L   ++   AQTGTGKTASFVLP+ 
Sbjct: 1   MPFSKLGLSNPIVTAVTEQGYTSPTPIQAKSIPVILSGRNLIAAAQTGTGKTASFVLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +    R +  R LIL PTRELA QV  N   YGK+  LT   + GG+  + Q ++L
Sbjct: 61  QLLSQSQTQRKKRIRALILTPTRELAVQVEANIALYGKHLALTSMAMYGGVDAKPQRQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + ++ILV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 LDGVDILVATPGRLLDMYTQRAIHFDELDILVLDEADRMLDMGFIEDIDKIMDKLPADRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT++ +++ +++  +  P  I   +  +  ++              K + L   L
Sbjct: 181 SLLFSATLSHQVKALAKTAIDKPVEI---SVIANTDSKPKIEQWLTTVDKDKKSALLSHL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +++    +IF   K+    L   LEK+G +   IHG   Q  R KIL++FK G I L+
Sbjct: 238 IKENSWHQALIFIETKQGAAKLVSQLEKRGINAECIHGGRSQEVREKILADFKAGEIGLL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ +AARGLDI ++  V N+D+P  A++YIHRIGRTGRAG +G+A +LV+K+D K++  
Sbjct: 298 IATGVAARGLDIDELPLVINYDLPYPADDYIHRIGRTGRAGANGEAVSLVSKDDFKNLCM 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE  +   ++    +  +   P +++ I+  N   K   + +K+   ++     S  K  
Sbjct: 358 IESRLGHLLERREIEGFA---PRKEVPISVLNFKPKFKKMTEKTKDNEQ-----SKSKPS 409

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
           +    S+K +  +     + ++       +P 
Sbjct: 410 LGTSPSKKRNDNKSANNRSKSNLRDSGNKLPP 441


>gi|296201832|ref|XP_002748195.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 2
           [Callithrix jacchus]
          Length = 603

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 135/441 (30%), Positives = 221/441 (50%), Gaps = 6/441 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 83  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 142

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 143 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 202

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 203 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 262

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 263 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 322

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 323 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 382

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 383 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 442

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N  L  L                  R++     K  GF+  +   +
Sbjct: 443 SDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 502

Query: 415 SQKSHIPLKESEKISKLQQDI 435
             + +  L + +  +K Q  +
Sbjct: 503 YDRGYSSLLKRDFGAKTQNGV 523


>gi|66522071|ref|XP_624210.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Apis mellifera]
          Length = 772

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 148/454 (32%), Positives = 234/454 (51%), Gaps = 3/454 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F   G    ++ A+    Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 256 SFGHFGFDDALIKAIRKNEYTQPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFIWPMLV 315

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + ++       P  LIL PTREL+ Q+     K+GK YN+ V    GG     Q+K L
Sbjct: 316 HIMDQRELKEGDGPIGLILAPTRELSQQIYQEARKFGKVYNVQVCCCYGGGSKWEQSKAL 375

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA++++ TPGRI+D        +  +  LV+DEADRM DMGF P +++I + V   RQ
Sbjct: 376 EGGAEIVVATPGRIIDLVKMKATNLTRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQ 435

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    ++K++ + L +P RI           +    +      + K   L Q L
Sbjct: 436 TLLFSATFKKRVEKLARDVLTDPVRIVQGDVGEANADVTQHVIVFNNNPTGKWTWLLQNL 495

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               +  + +IF  +K N   L ++L+ + F V  +HG++DQ  R K+++ FK+  +  +
Sbjct: 496 IEFLSAGSLLIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQIERNKVITAFKKKEVSTL 555

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TLV ++D +    
Sbjct: 556 VATDVAARGLDIPHIRTVLNYDVARDIDTHTHRIGRTGRAGEKGTAYTLVTEKDKEFAGH 615

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKSTGFDRRKKNYSSQKS 418
           + + +E     +   L  L         ++    + K+  +     GF  R +  S+   
Sbjct: 616 LVRNLEGANQEVPKSLMDLAMQSAWFRKSRFKGGKGKSLNVGGAGLGFRGRPEPSSTSSC 675

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPAF 452
               + S+ IS++ + ++ +   S        AF
Sbjct: 676 SSSSQGSKDISEVVKKLERHGPGSDRLSAMKAAF 709


>gi|303229600|ref|ZP_07316388.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302515725|gb|EFL57679.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 432

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 147/447 (32%), Positives = 238/447 (53%), Gaps = 19/447 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+  +++  +   G  +PTPIQ ++IP+V + +D+   AQTGTGKT +F+LP+L 
Sbjct: 3   SFKSLGVCDELISTLQKQGIKEPTPIQEQSIPIVFKGNDIIAKAQTGTGKTLAFLLPILQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +      V   + LI+ PTREL  Q++D  +  G   ++ +  LIGG   E+Q ++L R
Sbjct: 63  RIHT---DVHQEQVLIIAPTRELIKQISDEAKVLGAVLDVDILPLIGGKTIESQLQQLGR 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+LDH  RG L +++I  +V+DEAD+ML MGF+P I+N+       RQ L
Sbjct: 120 RPHVILGTPGRLLDHAKRGSLHLDSIRRVVLDEADQMLHMGFLPDIENLIGQTDANRQLL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ D+++ +++ ++  P  +       T ++I+        +           +  
Sbjct: 180 LFSATIPDKIRNLAKAYMTKPVSVTAEGKHITLDSIDQRVYMMNPEDK---TPRLIKMIQ 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I+FCN+++  + L + L   G ++  +HG++ Q  R +IL +F +   Q++VA
Sbjct: 237 EDNPYLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI  + HV+N+DVP+  + YIHRIGRTGRAG  G A T     D   +  IE
Sbjct: 297 TDIAARGIDIEGITHVYNYDVPHDVDYYIHRIGRTGRAGNSGIAVTFATPADESWLRRIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           + I+  +     D            I    +A    P  +K+T   +   +Y S K+   
Sbjct: 357 RAIQATLTKYTKDGQ----------IKTKGNA-STAPKRKKATSKPKITSSYQSTKAKAH 405

Query: 422 LKESEKISKLQQDIQENDADSLGFRGN 448
                K S  +Q  +       G RGN
Sbjct: 406 KARGHKGSNTRQ--RRTSTSQTGRRGN 430


>gi|269965345|ref|ZP_06179465.1| ATP-dependent RNA helicase, DEAD box family [Vibrio alginolyticus
           40B]
 gi|269829991|gb|EEZ84220.1| ATP-dependent RNA helicase, DEAD box family [Vibrio alginolyticus
           40B]
          Length = 447

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 128/440 (29%), Positives = 204/440 (46%), Gaps = 11/440 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + K T IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 5   LQFKDLGLDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 64

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR +IL PTRELA QV           +   AL++GG  F  Q K L
Sbjct: 65  HKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYEAALILGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH +   L ++ +E L++DEADRMLD+GF P ++ I       R+
Sbjct: 125 RRYPKFIVATPGRLADHLDHRSLYLDGLETLILDEADRMLDLGFAPELRRIHKAAKHRRR 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D                 +    S  E  +         +      +   +
Sbjct: 185 QTLMFSATLDHADVNEIAAEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILDRV 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+   +  IIF   + +   L   L ++     A+ GN++Q  R  I+S F+    +++
Sbjct: 245 LSEAEYRQVIIFTATRDDTERLTEKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDI  V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D      
Sbjct: 305 VTTDVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKR 364

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +E  +++ +++     L G    L PP       +    +      + +    +R K++ 
Sbjct: 365 VEAYLQQDLEFSVFEDLKGKFKGLKPPKPDFRNKKATAKKARPQAKKSAKKPAKRDKSFY 424

Query: 415 SQKS-----HIPLKESEKIS 429
              S      IP K+    S
Sbjct: 425 KNVSVGDDVFIPKKKPAAPS 444


>gi|223634733|sp|A5DQF1|RRP3_PICGU RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|190348857|gb|EDK41404.2| hypothetical protein PGUG_05502 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 475

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 135/423 (31%), Positives = 222/423 (52%), Gaps = 13/423 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L P+++ A+    Y KPTPIQ   IP  L+  D+ G+AQTG+GKTA+F +P+L 
Sbjct: 65  TFSELNLVPELMEAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQ 124

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L + +        L+L PTRELA Q+ + F+  G    +    ++GG+    Q + L R
Sbjct: 125 SLWEAQRPYY---ALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQARDLMR 181

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +L+ TPGRI+DH  N     + +++ LV+DEADR+LDM F P +  I  ++P  R T
Sbjct: 182 KPHILVATPGRIMDHLENTKGFSLKSLQYLVMDEADRLLDMDFGPALDKILKVIPTKRTT 241

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT+++ K+    L  P ++ V+    TA+ +    +     Y     +      
Sbjct: 242 YLFSATMTNKIAKLQRASLHEPVKVAVSNKYQTADNLVQSMMLVSDGYKNTFLIHLL--- 298

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   K+ I+F     +           GFS   +HG + Q  R+  L+ FK G   +++
Sbjct: 299 NEFMGKSIIVFTRTCAHTQRSTLLARILGFSAVPLHGQLTQSQRLGSLNKFKSGKANILI 358

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V N+D+P  ++ YIHR+GRT RAG+ GK+ +LV + D++    I
Sbjct: 359 ATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLEMYLRI 418

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E ++  K+          +PP + ++    +  R +    +++  F  ++          
Sbjct: 419 ESVLGFKLP------KDPSPPRDVLNALHVHVDRASAEAIKQTKDFHEKRTKKKRDDRDR 472

Query: 421 PLK 423
             +
Sbjct: 473 EER 475


>gi|78224228|ref|YP_385975.1| ATP-dependent RNA helicase RhlB [Geobacter metallireducens GS-15]
 gi|78195483|gb|ABB33250.1| ATP-dependent RNA helicase RhlB [Geobacter metallireducens GS-15]
          Length = 438

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 142/409 (34%), Positives = 208/409 (50%), Gaps = 10/409 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   V   + D G+   TPIQ KT+PL L   DV G AQTGTGKTA+F++ + 
Sbjct: 1   MKFTDLNLPELVQRGIADTGFTDCTPIQEKTLPLALSGKDVAGQAQTGTGKTAAFLISLF 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           T           R PR LIL PTREL  Q+  + +  G +    +  + GG+ +  Q   
Sbjct: 61  TRLLKNPTEGETRNPRALILAPTRELVVQIEKDAQALGAHCGFVIQAIYGGVDYMKQRSA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ GADV++ TPGR++D+  +    +  IE+LVIDEADRM DMGFI  ++ I   +P   
Sbjct: 121 LKEGADVVVGTPGRLIDYLKQKVYSLKEIEVLVIDEADRMFDMGFIADLRFILRRLPPFD 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +      + T   + +   +       +V        T E      Y    K+   L   
Sbjct: 181 KRQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQM-TAERVEQVLYHVGRKEKFPLLLG 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +  M+  +IF N K+    L   L    F    I G+++QR RM+IL +FK G + +
Sbjct: 240 LLRKKGMERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRMRILEDFKNGKLPI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+D+A+RGL I  V HV N+D+P  AE+Y+HRIGRT RAG  GKA ++  ++   H++
Sbjct: 300 MIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISMADEDGAFHLE 359

Query: 359 AIEKLIEKKV--DWLNGDL-----SSLNPPLEKIDIAQHNHARKNNPIP 400
           AI + I+ K+  +W   DL       + P  +  +       R     P
Sbjct: 360 AIHEYIKDKIPVEWAEDDLFVHDFKRVKPKPKGHETRAKGPTRHGRKHP 408


>gi|225868917|ref|YP_002744865.1| DEAD box helicase family protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702193|emb|CAW99913.1| DEAD box helicase family protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 538

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 142/373 (38%), Positives = 220/373 (58%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTAFNLSEDIQSAVVTAGFEKASPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      ++    L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  NKIRTADNTIQA---LVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGR+LD   R  L ++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHVVVGTPGRLLDLIKRKALRLDHVETLILDEADEMLNMGFLEDIEAIISRVPDHRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ ++V     T   ++  +V    Q             
Sbjct: 178 LLFSATMPAPIKEIGVKFMKDPEHVQVKNKELTNVNVDQYYVRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   + ++V
Sbjct: 235 DVQQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLTMI 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 EHLTKKRMKPLKP 367


>gi|195977782|ref|YP_002123026.1| probable ATP-dependent RNA helicase Exp9 [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974487|gb|ACG62013.1| probable ATP-dependent RNA helicase Exp9 [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 538

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 142/373 (38%), Positives = 220/373 (58%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTAFNLSEDIQSAVVTAGFEKASPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      ++    L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  NKIRTADNTIQA---LVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGR+LD   R  L ++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHVVVGTPGRLLDLIKRKALRLDHVETLILDEADEMLNMGFLEDIEAIISRVPDHRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ ++V     T   ++  +V    Q             
Sbjct: 178 LLFSATMPAPIKEIGVKFMKDPEHVQVKNKELTNVNVDQYYVRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   + ++V
Sbjct: 235 DVQQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLTMI 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 EHLTKKRMKPLKP 367


>gi|17228718|ref|NP_485266.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
 gi|17130570|dbj|BAB73180.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
          Length = 513

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 134/371 (36%), Positives = 208/371 (56%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LG+S + V  +   G+  PT IQ + IP +L   DV G +QTGTGKTA+F LP+L
Sbjct: 3   LSFPELGISQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  +  V+     +L PTRELA QV D   ++  N  L    + GG   + Q  +L+
Sbjct: 63  ERLDPQQKAVQAI---VLTPTRELAIQVHDAMAQFVGNSGLRTLAIYGGQSIDRQMLQLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++D   RG L ++ ++  V+DEAD ML MGFI  ++ I S  P  RQT
Sbjct: 120 RGVHIVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQDRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++ +   FL++P  + V  P +T   I          ++K      Q + 
Sbjct: 180 ALFSATMPPSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKAR--ALQPIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  +IF   ++    L   L+  G SV   HG++ Q++R ++L+ F+   ++ +V
Sbjct: 238 EMEDPETALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E Y+HRIGRTGRAG+ G A TLV   + +     
Sbjct: 298 ATDIAARGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAITLVQPFERRKQQIF 357

Query: 361 EKLIEKKVDWL 371
           E+ + +    L
Sbjct: 358 ERHVRQNWQLL 368


>gi|319957241|ref|YP_004168504.1| dead/deah box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
 gi|319419645|gb|ADV46755.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
          Length = 421

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 161/416 (38%), Positives = 240/416 (57%), Gaps = 10/416 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F  LGL P ++ AV   GY  PTPIQ + IP VL+ HDV   AQTGTGKTA F LP+  
Sbjct: 7   TFDTLGLDPAILKAVSAEGYTTPTPIQAQAIPAVLEGHDVLAAAQTGTGKTAGFTLPLLE 66

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I    + + R  R L+L PTRELAAQVA++   YGKN  +   ++ GG+  E Q + +
Sbjct: 67  RLIQNPRQMKARQVRALVLTPTRELAAQVAESVRTYGKNLKIRSTVVYGGVGIEPQKRAI 126

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +++I TPGR+LD  N+  + ++ +E L++DEADRMLDMGFI  I+ I +  P  RQ
Sbjct: 127 ARGCEIVIATPGRLLDLANQRAIDLSALETLILDEADRMLDMGFIHDIKKIIAQTPKERQ 186

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT + E+++++   L++P  IEV   ++TAE +            ++       +
Sbjct: 187 TLLFSATFSPEIKRLAAGMLKDPVLIEVARQNTTAEQVSQKVHHVDRHRKQEL---LIRM 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   K  ++F   K     L   L++ G    AIHGN  Q +RMK L +FKE  ++++
Sbjct: 244 IKEKGWKQVLVFTRTKHGANKLSKQLDQAGIPSEAIHGNKTQNARMKALKSFKENRVRVL 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV NF++PN AE+Y+HRIGRTGRAG  G+A +LV  ++ + +  
Sbjct: 304 VATDIAARGIDIAALPHVVNFELPNVAEDYVHRIGRTGRAGSEGEALSLVCVDEHQLLRN 363

Query: 360 IEKLIEKKVDWL-----NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           IE+ I+ ++  +       D S    P++     +     +      +S+   RR 
Sbjct: 364 IERFIKAEIPKIATPGFEVDPSIRPEPIQNGRNNRGRGNSRGRQSAGRSSAGRRRS 419


>gi|302335558|ref|YP_003800765.1| DEAD/DEAH box helicase domain protein [Olsenella uli DSM 7084]
 gi|301319398|gb|ADK67885.1| DEAD/DEAH box helicase domain protein [Olsenella uli DSM 7084]
          Length = 510

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 154/371 (41%), Positives = 222/371 (59%), Gaps = 4/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA LGL    + AV D GY  PTP+Q ++IP  L+  DV   AQTGTGKTA+F+LP L 
Sbjct: 44  DFASLGLGALTLAAVRDMGYEVPTPVQARSIPPALRGRDVIAAAQTGTGKTAAFLLPSLD 103

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   +A  + P  L++ PTRELA Q+ +           T A ++GG+ +E Q + L R
Sbjct: 104 GLPHAQA-GQGPLMLVVTPTRELAQQIDEVARAICARTGHTAATVVGGVGYEPQRRALRR 162

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+L+ TPGR++D  ++G   +  +++LV+DEADRMLDMGF+P ++ I    P  RQTL
Sbjct: 163 GCDLLVATPGRLIDLMDQGDAHLGEVQVLVLDEADRMLDMGFLPAMRKIVGRTPEGRQTL 222

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +   +E+ +++P R+E+    + AETIE   +    +           +  
Sbjct: 223 LFSATLDGHVTSNTESLVKDPVRVEIAHKGTAAETIEQFVLGVSPEAK---HAALTHVLE 279

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  I+FC  K     +C  L ++GFS   IHGN  Q  R + L  F+EG++ ++VA
Sbjct: 280 NEGAERVIVFCRGKHRADGICRRLRRKGFSAAPIHGNRSQNQRERALRGFREGSVGVLVA 339

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+DIPDV +V NFDVP  AE+YIHRIGRTGRAG  G A T V ++D   +  +E
Sbjct: 340 TDVLARGIDIPDVAYVVNFDVPGDAEDYIHRIGRTGRAGESGWALTFVTEDDYLDLRDVE 399

Query: 362 KLIEKKVDWLN 372
           KL+ + V    
Sbjct: 400 KLMGRVVPTYP 410


>gi|157150549|ref|YP_001450886.1| DEAD-box ATP dependent DNA helicase [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157075343|gb|ABV10026.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 523

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 144/373 (38%), Positives = 226/373 (60%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L
Sbjct: 1   MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  EKIDTDNPAVQA---LVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L ++ IE L++DEAD ML+MGF+  I++I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D ++++   F++ P+ +++     T E ++  ++                  
Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++V
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 ENLTKKRMKGLKP 367


>gi|117620754|ref|YP_854622.1| ATP-dependent RNA helicase RhlB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|189040024|sp|A0KEG9|RHLB_AERHH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|117562161|gb|ABK39109.1| ATP-dependent RNA helicase RhlB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 429

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 139/421 (33%), Positives = 220/421 (52%), Gaps = 5/421 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA +GL P+V+  +   G+   TPIQ  ++PL+++ HD+ G AQTGTGKT +F+     
Sbjct: 10  KFAQMGLEPEVLAGLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTLAFLAATFN 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                       +  PR +I+ PTRELA Q+ ++ E    +  L + L  GG  ++ Q  
Sbjct: 70  YLLTHPLTKPRLINQPRAIIMAPTRELAVQIYNDAESMSASTGLKLGLAYGGEGYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE+G D+LI T GRI+D+F    + ++NI+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLEQGVDILIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFDLGFIKDIRFLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T  L+     +        V         +       Y     K  LL  
Sbjct: 190 TERLSMLFSATLSLRVQELAYEHMNHPEHVQIEPEQMTGVRIKEELFYPSNEDKMLLLLS 249

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++  +  I+F N K    ++   LE  G  V  + G++ Q+ RMKIL +F +GT+ 
Sbjct: 250 -LMEEEWPEKAIVFANTKHVCEDVHAWLENDGHRVGLLTGDVPQKKRMKILEDFTKGTVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IPDV HVFN+D+P+ AE+Y+HRIGRTGRAG+ G + +L  ++   ++
Sbjct: 309 ILVATDVAARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKSGHSISLACEDYAFNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            AIE+ I   +     D  +L   +        N    N  +  +  G +   +    +K
Sbjct: 369 PAIEEYIHHPIPVSKYDREALLDDVTAPKRVFRNRQPVNRNMRDRQGGGNSNNRRRPPRK 428

Query: 418 S 418
           S
Sbjct: 429 S 429


>gi|323691087|ref|ZP_08105368.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           symbiosum WAL-14673]
 gi|323504856|gb|EGB20637.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           symbiosum WAL-14673]
          Length = 552

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 139/390 (35%), Positives = 227/390 (58%), Gaps = 13/390 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL L  K++ AV D G+   +PIQ ++IPL L+  D+ G AQTGTGKTA+F +P+L
Sbjct: 4   IKFEDLNLDAKILRAVTDMGFEAASPIQGQSIPLELEGLDIIGQAQTGTGKTAAFGIPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++    +++     IL PTRELA QV++   +  K  +    L I  G     Q + L
Sbjct: 64  QKVDPKSKKLQAI---ILCPTRELAIQVSEEIRRLAKYMHGVKVLPIYGGQEIGRQIRSL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  V+I TPGR++DH  R  L + ++  +V+DEAD ML+MGF+  ++ I S +P  RQ
Sbjct: 121 KDGIQVIIGTPGRVMDHMRRKTLKLEHVHTVVLDEADEMLNMGFLEDMETILSELPEERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++FSATM   + ++++ F ++P+ ++V     T   +   +     +   +        
Sbjct: 181 TVMFSATMPPAIAEIAKKFQKDPEIVKVVKKELTVPKVTQYYYEVKPKTKVEVMCRLL-- 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  I+FCN K+ V +L   L+ +G+    +HG++ Q  R +++++F+ G   ++
Sbjct: 239 -DMYDPKLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR GKAF+LV   ++  +  
Sbjct: 298 IATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVVGREVYKLRE 357

Query: 360 IEKLIEKKVDWLNGDLSSLN----PPLEKI 385
           I++  + K+  +   + SLN      +EKI
Sbjct: 358 IQRYCKTKI--IPQPIPSLNDVTSIKVEKI 385


>gi|323483414|ref|ZP_08088802.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum
           WAL-14163]
 gi|323403268|gb|EGA95578.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum
           WAL-14163]
          Length = 552

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 139/390 (35%), Positives = 227/390 (58%), Gaps = 13/390 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL L  K++ AV D G+   +PIQ ++IPL L+  D+ G AQTGTGKTA+F +P+L
Sbjct: 4   IKFEDLNLDAKILRAVTDMGFEAASPIQGQSIPLELEGLDIIGQAQTGTGKTAAFGIPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++    +++     IL PTRELA QV++   +  K  +    L I  G     Q + L
Sbjct: 64  QKVDPKSKKLQAI---ILCPTRELAIQVSEEIRRLAKYMHGVKVLPIYGGQEIGRQIRSL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  V+I TPGR++DH  R  L + ++  +V+DEAD ML+MGF+  ++ I S +P  RQ
Sbjct: 121 KDGIQVIIGTPGRVMDHMRRKTLKLEHVHTVVLDEADEMLNMGFLEDMETILSELPEERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++FSATM   + ++++ F ++P+ ++V     T   +   +     +   +        
Sbjct: 181 TVMFSATMPPAIAEIAKKFQKDPEIVKVVKKELTVPKVTQYYYEVKPKTKVEVMCRLL-- 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  I+FCN K+ V +L   L+ +G+    +HG++ Q  R +++++F+ G   ++
Sbjct: 239 -DMYDPKLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR GKAF+LV   ++  +  
Sbjct: 298 IATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVVGREVYKLRE 357

Query: 360 IEKLIEKKVDWLNGDLSSLN----PPLEKI 385
           I++  + K+  +   + SLN      +EKI
Sbjct: 358 IQRYCKTKI--IPQPIPSLNDVTSIKVEKI 385


>gi|262274077|ref|ZP_06051889.1| cold-shock DEAD-box protein A [Grimontia hollisae CIP 101886]
 gi|262221887|gb|EEY73200.1| cold-shock DEAD-box protein A [Grimontia hollisae CIP 101886]
          Length = 618

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 140/377 (37%), Positives = 213/377 (56%), Gaps = 7/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L L+  ++ A+   G+V PTPIQ  +IPL++   D  G AQTGTGKTA+F LP+L 
Sbjct: 7   EFRQLDLAENILSALDAIGFVSPTPIQAASIPLLMTGVDALGKAQTGTGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKLE 120
            L+ G+ +   P+ +++ PTRELA QVA   +  G+  +    L I G      Q + L 
Sbjct: 67  KLDLGQRK---PQAIVMAPTRELAIQVAAEMKALGQKIDGLKVLEIYGGASIVDQMRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ D  NR +L ++ +   V+DEAD ML MGF+  +  I    P + Q 
Sbjct: 124 AGAHIVVGTPGRVKDLINRERLQLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPESAQR 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++++ + FL+ P RI+V   + T E +E  F         +        +
Sbjct: 184 VLFSATMPPMVKEIVDRFLREPARIDVAGSNRTVEKVEQQFWVVKGVEKDEAMSRLLETE 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D     I+F   +++   L   L  +GF   A+HG+I Q  R + + + K G I ++V
Sbjct: 244 ETD---ASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVEHIKRGVIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD+P + HVFN+D+P   E+YIHRIGRTGRAGR GKA  LV    I+ +  I
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRAGKAILLVRTNQIRMLRTI 360

Query: 361 EKLIEKKVDWLNGDLSS 377
           E++   +++ +   L  
Sbjct: 361 ERVTSTRMEEIQLPLRD 377


>gi|257454198|ref|ZP_05619468.1| cold-shock DEAD box protein A homolog [Enhydrobacter aerosaccus
           SK60]
 gi|257448371|gb|EEV23344.1| cold-shock DEAD box protein A homolog [Enhydrobacter aerosaccus
           SK60]
          Length = 777

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 145/462 (31%), Positives = 241/462 (52%), Gaps = 27/462 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  ++ +++  GY  PTPIQ + IP  L+  D+   AQTG+GKTA+FVLP+L  
Sbjct: 71  FTALGLSGSLLKSIVATGYTTPTPIQARAIPAALEGRDLLLSAQTGSGKTAAFVLPILHQ 130

Query: 63  ----------------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                            ++GR + ++ + LIL PTRELA QV D+  KYG       ++ 
Sbjct: 131 LSELQAKEKAAEKTASGKRGRQQPKVVQALILTPTRELANQVQDSIRKYGSAMKDLYSVP 190

Query: 107 -IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
            +GG  +  Q + L++G  +++ TPGR+LDH N  ++ ++++ +LV+DEADRMLDMGF  
Sbjct: 191 LVGGAAYSGQIRALKKGVQIIVATPGRLLDHINAQRVNLSDLTMLVLDEADRMLDMGFAD 250

Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
            I  I    P  RQT++ SAT    + K++E+F ++P+RI +   ++  +   +      
Sbjct: 251 DINAILEATPAHRQTIMSSATWDGPVGKIAESFTKDPERINIKVETAHIDEKVYFCDNFD 310

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            +       L + L         IIF   K++   +   L++     C +HG++ Q  R 
Sbjct: 311 HKNK-----LLEQLICDPERGQAIIFTATKRSSEEVAERLQQWDHKACYLHGDLPQSKRN 365

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           +I+S+ + G   ++VA+D+AARGLD+P++ HVFN+D+P + E+Y+HRIGR+GRAGR G A
Sbjct: 366 RIVSDLRSGKFDIVVATDVAARGLDLPNITHVFNYDLPRQVEDYVHRIGRSGRAGRTGIA 425

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDW--LNGDLSSLNPPLE---KIDIAQHNHARKNNPIP 400
             L +++D +    I + +++ ++   + G         E   K +        ++    
Sbjct: 426 INLCSRDDRRQFGNIARYLKRDINEAQVEGLEPRFVEKFEGRGKPNGRDGRGRGRSGSDS 485

Query: 401 QKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADS 442
           +        +    +  S  P  E     K + D QE     
Sbjct: 486 RGGRDDRGSRSQRFAGSSDRPSSERRFADKPRFDNQERYGKP 527


>gi|148978452|ref|ZP_01814926.1| ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3]
 gi|145962359|gb|EDK27639.1| ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3]
          Length = 436

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 140/432 (32%), Positives = 214/432 (49%), Gaps = 10/432 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L P+V+  +   G+   TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 10  KFADLDLLPQVIEGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 E    +   PR +I+ PTRELA Q+ ++ E    +  +  AL  GG  ++ Q  
Sbjct: 70  HLLKTPEHEGRKPNQPRAIIMAPTRELAIQIYNDAESLVASTGIKAALAYGGESYDKQLG 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           K+E GAD+LI T GRI+D + +    +N+I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KIEEGADILIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +  L    + T   +     F       E        +T        +   ++    L Q
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMHN-PEHVVVEPERKTGHRIKEELFYPSNEHKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++  +  IIF N K     +   L   G  V  + G++ Q+ R KIL  F +G + 
Sbjct: 249 TLVEEEWPERAIIFANTKHKCELVWGHLAADGHRVGLLTGDVPQKKREKILEQFTQGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   ++   ++
Sbjct: 309 LLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAINL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE+ IE  +   + D S+L       D+      R  NP  ++S     R  N    +
Sbjct: 369 PPIEEYIEHAIPVSDYDASALLE-----DLPAPLRLRTRNPQQRRSNNNGSRNGNRKPNQ 423

Query: 418 SHIPLKESEKIS 429
           +  P +      
Sbjct: 424 NRRPRQPRHNKE 435


>gi|322796814|gb|EFZ19232.1| hypothetical protein SINV_01003 [Solenopsis invicta]
          Length = 1201

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 131/424 (30%), Positives = 220/424 (51%), Gaps = 8/424 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +    P V+  +   GY++PTPIQ +  P+ L   D+  IAQTG+GKT  ++LP +  
Sbjct: 114 FEEGNFPPYVMENIHREGYLRPTPIQAQGWPIALSGRDLVAIAQTGSGKTLGYILPAIVH 173

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +           P  LIL PTRELA Q+ +    +G+   +    + GG P   Q   LE
Sbjct: 174 IIHQPRISSGDGPIVLILAPTRELAQQIQEVANSFGEMAAVRNTCIFGGAPKGPQAHDLE 233

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G ++ I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 234 KGIEICIATPGRLIDFLEKGTTNLYRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 293

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLL 239
           L++SAT   E++ ++E+FL +   + + + + +A       +    +Y K          
Sbjct: 294 LMWSATWPKEVRALAEDFLTDYIHLNIGSLTLSANHNITQIIDVCQEYEKDLKLYRLLQE 353

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+ V ++  ++ ++G+   +IHG+ +Q+ R  +L  F+ G   ++
Sbjct: 354 IGTEKENKTIIFVETKRKVDDITKNIRREGWQAVSIHGDKNQQERDHVLQEFRNGKAPIL 413

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV +V NFD P+ +E+YIHRIGRTGR  + G A+      ++KH   
Sbjct: 414 VATDVAARGLDVDDVKYVINFDFPSSSEDYIHRIGRTGRKRQTGTAYAFFTTHNMKHAGD 473

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           + +++ +    +N  LS +    +       N   +N      S+G +  ++  S + + 
Sbjct: 474 LIEVLREAGQNVNPRLSEMAEMAK-----AGNFGGRNGKRFGGSSGGNGAERTNSRRSND 528

Query: 420 IPLK 423
           +  +
Sbjct: 529 VRGR 532



 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 129/380 (33%), Positives = 202/380 (53%), Gaps = 3/380 (0%)

Query: 3    FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
            F + G    V+  +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP +  
Sbjct: 707  FEEGGFPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 766

Query: 63   LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +       R   P  LIL PTRELA Q+      +G +  +    + GG P   Q + LE
Sbjct: 767  INHQPRLSRNDGPIALILAPTRELAQQIQQVASDFGMSSQVRNTCIFGGAPKGPQARDLE 826

Query: 121  RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            RG ++ I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 827  RGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQT 886

Query: 181  LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLL 239
            L++SAT   E++ ++E FL +  +I + +    A       V    +Y K+   +     
Sbjct: 887  LMWSATWPKEVRNLAEEFLTDYIQINIGSLQLAANHNILQIVDVCEEYEKESKLMKLLEE 946

Query: 240  QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             S +     IIF   K+ V ++  ++ + G+    IHG+  Q+ R  +L+ F+     ++
Sbjct: 947  ISNEPENKTIIFVETKRKVDDITRAINRYGWQAIGIHGDKSQQERDYVLNQFRNSRSAIL 1006

Query: 300  VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            VA+D+AARGLD+ DV  V N D P+ +E+Y+HRIGRTGR+ R G A+      +      
Sbjct: 1007 VATDVAARGLDVEDVKFVINLDYPSNSEDYVHRIGRTGRSQRTGTAYAFFTPGNAHKAGD 1066

Query: 360  IEKLIEKKVDWLNGDLSSLN 379
            + +++E+    +N  L  L+
Sbjct: 1067 LIQVLEEAKQVVNPKLYDLS 1086


>gi|52430509|gb|AAH82849.1| DDX5 protein [Xenopus laevis]
          Length = 608

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 137/411 (33%), Positives = 218/411 (53%), Gaps = 3/411 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           ++F +      V+ A+    + +PTPIQ +  P+ L   D+ G+A TG+GKT S++LP  
Sbjct: 92  LNFNEASFPANVMEAIKRQNFTEPTPIQGQGWPVALSGLDMVGVAMTGSGKTLSYLLPGI 151

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +    +    R   P  L+L PTRELA QV     +YG+   L    + GG P   Q + 
Sbjct: 152 VHINHQPFLQRGDGPILLVLAPTRELAQQVQQVAAEYGRACRLRSTCIYGGAPKGPQIRD 211

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +N    LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 212 LERGVEICIATPGRLIDFLEAGKTNLNRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 271

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 272 QTLMWSATWPKEVRQLAEDFLRDYVHINIGALELSANHNILQIVDVCNDGEKDDKLVRLM 331

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+   +L   L + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 332 EEIMSEKENKTIVFVETKRRCDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFKHGKSP 391

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 392 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSSKTGTAYTFFTPGNIKQV 451

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           + +  ++ +    +N  L  L     +       + R++     K  G+DR
Sbjct: 452 NDLISVLREANQAINPKLLQLVEDRGRFRGRGGMNDRRDRFSSGKRGGWDR 502


>gi|28897677|ref|NP_797282.1| RhlE protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|260364553|ref|ZP_05777162.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260876480|ref|ZP_05888835.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260895848|ref|ZP_05904344.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|28805890|dbj|BAC59166.1| RhlE [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086771|gb|EFO36466.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308092804|gb|EFO42499.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308115381|gb|EFO52921.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|328473340|gb|EGF44188.1| RhlE protein [Vibrio parahaemolyticus 10329]
          Length = 411

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 155/420 (36%), Positives = 242/420 (57%), Gaps = 10/420 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV   GY KPT IQ K IP+VL+  ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSAPITDAVTALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G   R +  R +IL PTRELA QV  + E YGKN  L    + GG+ +  Q + L
Sbjct: 61  EKLSQGETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVEYAPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR++D + +  +  + +E+LV+DEAD+MLDMGFI  I  I   +P   Q
Sbjct: 121 IEGVDIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIIDCMPEDVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT+++ ++ +++N + +P+ I   T +  + +  +             + L   +
Sbjct: 181 SLLFSATLSNPVRDLAKNAIVDPEEI---TIAKHSASKSNIKQWITTVDKDMKSSLLSHM 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++     +IF   K     L   LEK+G    A H   +QR R +++  FK G IQ +
Sbjct: 238 LNENDWSQVLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI ++  V N+D+P  A+ Y+HRIGRTGRAG  G+A +LV+K+D K++  
Sbjct: 298 VATGVAARGIDIDNLPVVINYDLPFPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCM 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE  +   ++ +  +  +   P + + I+  N+  KN   PQ +     R++N   + + 
Sbjct: 358 IESRLGHLLERVEIEGFA---PRKPVPISILNYVPKNKRKPQDNR---PRRENSEPRDAK 411


>gi|228908214|ref|ZP_04072060.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 200]
 gi|228851412|gb|EEM96220.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 200]
          Length = 454

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 143/418 (34%), Positives = 230/418 (55%), Gaps = 11/418 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            +    + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KINPESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           EK +   +     +     P ++++D       +       +    D R+ + S  + 
Sbjct: 360 EKTLGAPIQREIIE----QPKIKRVDENGKPVPKPAPKKSGQYRQRDSREGSKSESRR 413


>gi|116515159|ref|YP_802788.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116257013|gb|ABJ90695.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 576

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 139/399 (34%), Positives = 222/399 (55%), Gaps = 8/399 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+  GL+  ++ ++   GY KP+PIQ   IP +L   DV G+AQTG+GKTA+F LP+L
Sbjct: 6   LSFSVFGLNSFLLKSLKILGYEKPSPIQSACIPYLLSGKDVLGMAQTGSGKTAAFALPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN-KKL 119
             +      ++ P+ L+L PTRELA QVA +F  + K    T  L + G          L
Sbjct: 66  NNINIS---LKFPQILVLVPTRELAVQVAKSFSDFSKYLIGTQVLALYGGQRYEIQLHAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG  +++ TPGR+LDH  RG L + ++  LV+DEAD ML MGFI  ++ I S +P   Q
Sbjct: 123 RRGPQIIVGTPGRLLDHLKRGTLSLIHLSSLVLDEADEMLRMGFIEDVETIMSKIPRKHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM + ++++S  F+  PK I++ +   T   I+  +     + +       +  
Sbjct: 183 TALFSATMPNIIRRISRRFMNTPKEIKIQSTGITRPDIQQSYWIVRGRKTDALIRFLE-- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   + +  +LEK G++  A++G+++Q  R + L   K G + ++
Sbjct: 241 --VEDFSATIIFVRTKNATLEVSEALEKNGYNSAALNGDMNQVLREQTLERLKNGKLDIL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  
Sbjct: 299 IATDVAARGLDVDRISFVINYDIPTDAESYVHRIGRTGRAGRTGRALLFVEYREYRLLKN 358

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           IE++I+  +  +    S +       +I+     + NN 
Sbjct: 359 IERIIKHPIHEIQLPKSEILIEKRLQNISNKIQEQLNNK 397


>gi|290559021|gb|EFD92400.1| DEAD/DEAH box helicase domain protein [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 434

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 130/416 (31%), Positives = 213/416 (51%), Gaps = 12/416 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + +  ++V ++   G+ +PT +Q + IP  L+  DV   ++TG+GKTA+F++P+   
Sbjct: 2   FDSMNIKKEIVDSLNAMGFKEPTEVQKQAIPPGLEGRDVIVKSKTGSGKTAAFLIPI--- 58

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                 +   P  +++ PTRELA QV D  ++ G N  +    + GG     Q + +  G
Sbjct: 59  -INNLKKSHYPSAMVIVPTRELAMQVTDVAKQIGHNIGIRTFTVYGGASINIQIEAIRAG 117

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++++ TPGR++D   RG+L  + I+ LV+DE D MLDMGFI  ++ I S +P  +QT+ 
Sbjct: 118 VNIIVGTPGRVIDLIKRGELPTDQIKFLVLDEFDIMLDMGFIDDVKYILSKIPQEKQTMF 177

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  E++ V+  + +NP  I +++   T +TIEH +            L        
Sbjct: 178 FSATIPSEIRAVTNKYTKNPIIINIDSKEVTVDTIEHYYSIARVADK---FLTLLAYIDT 234

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  I+FC  + N   +   L K G     +HG + Q  R   LS FK GT  L+  +
Sbjct: 235 KKPKKSIVFCRTQINAERIHTILRKVGIPAVLMHGGLSQSRREHSLSLFKSGTEMLIATN 294

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
              +RGLDI +V  + NFD     + Y+HR+GRT R G+ G+AFT++   +   +  IE 
Sbjct: 295 VA-SRGLDIDNVSDIINFDAEEDPKAYVHRVGRTARMGKSGRAFTILTPRERYLVYDIES 353

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA----RKNNPIPQKSTGFDRRKKNYS 414
             + K++ L  DLSS    ++ I    ++      R+N+         D+R  N  
Sbjct: 354 YAKIKMNLLEFDLSSYKEKMKGISEQTNDFGDMAMRRNSGFGGDRRNSDKRPFNRR 409


>gi|193683600|ref|XP_001951837.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
           [Acyrthosiphon pisum]
          Length = 450

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 130/408 (31%), Positives = 216/408 (52%), Gaps = 7/408 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLG++  +        +  PT IQ + IP+ LQ  D+ G+A+TG+GKT +F +P+L
Sbjct: 19  VTFKDLGVTDVLCETCETLKWKTPTKIQKEAIPVALQGKDIIGLAETGSGKTGAFAIPIL 78

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN-KKL 119
             L +   R      LIL PTRELA Q+++  E  G +  +  A+++GG+   AQ+    
Sbjct: 79  QALLENPQRYFA---LILTPTRELAFQISEQIEALGSSIGVKCAVIVGGMDMMAQSLMLA 135

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   ++      +    N     + N+++LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 136 KKPHIIIATPGRLVDHLENTKGFSLRNLKVLVMDEADRILNMDFEEEVDKILKVIPRERR 195

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT ++QK+    L +P R+EV+T   T E ++  ++       K   +    +
Sbjct: 196 TFLFSATMTKKVQKLHRASLVDPVRVEVSTKFQTVEQLQQYYIFIPV---KYKDVYLVHI 252

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F       V +   L   G     +HG + Q  R+  L+ FK  +  ++
Sbjct: 253 LNEMAGNSFMVFMATCNGTVRVALLLRNLGLDAIPLHGQMTQNKRLASLNKFKSKSRSIL 312

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+++RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA TLV + DI+    
Sbjct: 313 ISTDVSSRGLDIPHVDVVINFDMPTHSKDYIHRVGRTARAGRSGKAITLVTQYDIELYQR 372

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           IE+LI KK+     +   +    E++  AQ         +  K    D
Sbjct: 373 IEQLISKKLPLYQVEDDEVMCLQERVSEAQRLAKMNMKDMGDKKGKRD 420


>gi|75906865|ref|YP_321161.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC
           29413]
 gi|75700590|gb|ABA20266.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC
           29413]
          Length = 513

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 134/371 (36%), Positives = 208/371 (56%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LG+S + V  +   G+  PT IQ + IP +L   DV G +QTGTGKTA+F LP+L
Sbjct: 3   LSFPELGISQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  +  V+     +L PTRELA QV D   ++  N  L    + GG   + Q  +L+
Sbjct: 63  ERLDPQQKAVQAI---VLTPTRELAIQVHDAMAQFIGNSGLRTLAIYGGQSIDRQMLQLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++D   RG L ++ ++  V+DEAD ML MGFI  ++ I S  P  RQT
Sbjct: 120 RGVHIVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQERQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++ +   FL++P  + V  P +T   I          ++K      Q + 
Sbjct: 180 ALFSATMPPSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKAR--ALQPIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  +IF   ++    L   L+  G SV   HG++ Q++R ++L+ F+   ++ +V
Sbjct: 238 EMEDPETALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E Y+HRIGRTGRAG+ G A TLV   + +     
Sbjct: 298 ATDIAARGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAITLVQPFERRKQQIF 357

Query: 361 EKLIEKKVDWL 371
           E+ + +    L
Sbjct: 358 ERHVRQNWQLL 368


>gi|304409763|ref|ZP_07391383.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307304119|ref|ZP_07583872.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304352281|gb|EFM16679.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306913017|gb|EFN43440.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 451

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 135/445 (30%), Positives = 215/445 (48%), Gaps = 11/445 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F D  L  +++ ++   G  +PT IQ + +P+ L   D+   ++TG+GKT +F+LP +
Sbjct: 1   MQFTDFSLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++       R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRVISTRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +    ++ TPGRI DH  +  L +N +E+LV+DEADRMLD+GF P ++ I       R+
Sbjct: 121 AKEPHFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAADHKRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +              V   ++ +E  +         +      L   L
Sbjct: 181 QTLMFSATLDHDEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDHKEALLARL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +T K  IIF   + +   L   L +QGF+  A+ G++ Q +R +I+  F  G  Q++
Sbjct: 241 LKDETHKQVIIFTATRPDTERLAAKLIEQGFATAALSGDLKQAARNQIMDQFARGQQQVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +   
Sbjct: 301 VTTDVASRGLDLLNVSLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNFKK 360

Query: 360 IEKLIEK-----KVDWLNGDLSSLNPPLEKI---DIAQHNHARKNNPIPQKSTGFDRRKK 411
           ++  + K      +  L    S L    ++     +A+   A+  +   + +T    R K
Sbjct: 361 VQVFLRKTFEISTIPGLEAKFSGLKSKAKQTPAKRVAKAELAKGKSKRTKAATPAPSRDK 420

Query: 412 NYSSQK--SHIPLKESEKISKLQQD 434
            + +       P+++    +KL QD
Sbjct: 421 RFITGVDIGDAPMRKKPAAAKLLQD 445


>gi|126699799|ref|YP_001088696.1| ATP-dependent RNA helicase [Clostridium difficile 630]
 gi|115251236|emb|CAJ69067.1| ATP-dependent RNA helicase [Clostridium difficile]
          Length = 497

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 136/431 (31%), Positives = 234/431 (54%), Gaps = 11/431 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L+ K++ ++   GY  P+ +Q + IP +L+  ++   ++TG+GKTASF +P+  
Sbjct: 4   TFEKFKLNEKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLCE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +      ++    LI+ PTRELA QV D     G+   +  + + G    + Q  +L++
Sbjct: 64  NINVDYNNIQA---LIVVPTRELALQVKDEISDIGRLKKVRCSAIFGKQSIKDQIAELKQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NRG + + N++ LVIDEAD+M + GF+  ++ I   +P  +   
Sbjct: 121 RVHIVVATPGRILDHINRGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVS 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCALLQQLLQ 240
           LFSAT+ +E++ + E ++ +   I +    S              + + ++  +L + L 
Sbjct: 181 LFSATIDEEIKYICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYILLKELI 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  K+ IIFCN K+ V  L + + K+GF +  +H ++ Q  R+ ++ +FK     ++V
Sbjct: 241 YSENPKSVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQKFNILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +SD+A+RG+ I D+  V N+DVP   ENYIHRIGRTGR G  GKA T+V ++D K+I+ I
Sbjct: 301 SSDVASRGIHIDDISLVINYDVPQDKENYIHRIGRTGRKGNSGKAITIVTEKDEKYIENI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  I  K++ L  D+        K+   +++       I +K +   +  KN S +   I
Sbjct: 361 ETYIGYKINELT-DIEQSRITHGKVLFEEYSKG-----ILKKVSKRKKVDKN-SYKSKDI 413

Query: 421 PLKESEKISKL 431
            L    ++ KL
Sbjct: 414 KLNIESEVVKL 424


>gi|332998278|gb|EGK17880.1| ATP-dependent RNA helicase rhlB [Shigella flexneri K-272]
          Length = 421

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 138/413 (33%), Positives = 206/413 (49%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P   + +G
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGAPRNHRRSG 421


>gi|114569901|ref|YP_756581.1| DEAD/DEAH box helicase domain-containing protein [Maricaulis maris
           MCS10]
 gi|114340363|gb|ABI65643.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10]
          Length = 452

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 153/412 (37%), Positives = 230/412 (55%), Gaps = 7/412 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLGL+  ++ A+ D GY  PTPIQ + IP +++  D+ GIAQTGTGKTASFVLP+L 
Sbjct: 3   QFSDLGLAEPILRALNDEGYETPTPIQREVIPAMIEGRDIVGIAQTGTGKTASFVLPILN 62

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L +             IL PTREL+AQ+ +N   Y ++  ++  L++GG+    Q + L
Sbjct: 63  RLIEENRPTHPKTCRALILSPTRELSAQILENVRGYSRHMRVSSTLVVGGVKPGPQIRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DVL+ TPGR+LD    G + ++  +IL++DEAD+MLD+GF P I+ I S +P  RQ
Sbjct: 123 SKGVDVLVATPGRLLDLMQSGAVKLSETKILILDEADQMLDLGFFPAIRKIVSFLPNKRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T L SATM   ++ +++  L +PK + V   S   E IE   V    +  K        L
Sbjct: 183 TALLSATMPKPIRALAQEMLDDPKEVSVAPASRPIERIEQSVVLLPKESKKDL---LLEL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S   ++  I+F   K     +   L   G    AIHGN  Q  R+K L  FK G ++++
Sbjct: 240 MSDRAVERAIVFSRTKHGADKINRHLVDYGLKSAAIHGNKSQAQRIKALDGFKTGAVKIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V HV N D+PN  E+Y+HRIGRT RAG+ G A ++    + +++  
Sbjct: 300 VATDIAARGIDVDNVSHVVNHDLPNLPESYVHRIGRTARAGKSGVAVSMCEPGEYEYLRD 359

Query: 360 IEKLIEKKVDW-LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           IE+L    +D    GD +      +    A  +  ++  P  +K     R +
Sbjct: 360 IERLTGLDIDRVFVGDEAKFLAEAKNATPAA-SQKKQQRPARKKPFTAGRAR 410


>gi|46907469|ref|YP_013858.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093505|ref|ZP_00231267.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 4b
           H7858]
 gi|226223849|ref|YP_002757956.1| ATP-dependent RNA helicase (DEAD motif) [Listeria monocytogenes
           Clip81459]
 gi|254824696|ref|ZP_05229697.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J1-194]
 gi|254852700|ref|ZP_05242048.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL R2-503]
 gi|254932440|ref|ZP_05265799.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HPB2262]
 gi|255522060|ref|ZP_05389297.1| ATP-dependent RNA helicase (DEAD motif) [Listeria monocytogenes FSL
           J1-175]
 gi|300765280|ref|ZP_07075264.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N1-017]
 gi|46880737|gb|AAT04035.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47018123|gb|EAL08894.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 4b
           H7858]
 gi|225876311|emb|CAS05020.1| Putative ATP-dependent RNA helicase (DEAD motif) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606021|gb|EEW18629.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL R2-503]
 gi|293583997|gb|EFF96029.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HPB2262]
 gi|293593935|gb|EFG01696.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J1-194]
 gi|300513963|gb|EFK41026.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N1-017]
 gi|332311691|gb|EGJ24786.1| ATP-dependent RNA helicase dbpA [Listeria monocytogenes str. Scott
           A]
          Length = 470

 Score =  164 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 135/477 (28%), Positives = 229/477 (48%), Gaps = 30/477 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+  +L LS ++  A+ + GY + TP+Q   IP+ L   D+   +QTG+GKTA+F +P+ 
Sbjct: 1   MN--NLKLSEEIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIA 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +E    +   P+ LI+ PTRELA QV       G+   +  A + G  PF  Q  +L 
Sbjct: 59  EQIEWEENK---PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELS 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+LDH  +G L ++ +  LV+DE D ML MGFI  +++I S +P  RQ 
Sbjct: 116 QKNHIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQN 175

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM +             KR + +       + +   +      +       + + 
Sbjct: 176 LFFSATMPE-------EMQDLIKRYQDDPMVIEMASEKTNPIFHVEMQTDNKEKTLKDVL 228

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +   + IIFCN K  V  L          V  IHG + Q  R + + +FK G  + ++
Sbjct: 229 ITENPDSAIIFCNTKNQVDELTDL---LDVKVSKIHGGLRQEDRFRAMDDFKSGKSRFLI 285

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A RG+D+ +V  V N+D+P   ENY+HRIGRTGRAG+ GKA + V   +   +  I
Sbjct: 286 ATDVAGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDI 345

Query: 361 EKLIEKKVD--------WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK---STGFDRR 409
           E++++  ++         +  +  +     +K    +     K N    K   + G  ++
Sbjct: 346 EEMLDVTIEKKRKPTVIEVKANEEAFRKKQQKRPTIKKARGEKLNKNIMKLYFNGGKKKK 405

Query: 410 KK--NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            +  ++    S +    +E I  +   I+++ +      G  PA +      K+  +
Sbjct: 406 IRAVDFVGTISKLEGITAEDIGII--TIEDHVSFVEILNGKGPAVLEMMRSRKVKGR 460


>gi|327272750|ref|XP_003221147.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
           [Anolis carolinensis]
          Length = 445

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 146/437 (33%), Positives = 236/437 (54%), Gaps = 10/437 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG++  +  A    G+  PT IQ+++IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 17  SFKELGVTEVLCEACDQLGWKTPTKIQVESIPLALQGRDIIGLAETGSGKTGAFALPILQ 76

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R      L+L PTRELA Q+++ FE  G +  +  A+++GGI   AQ+  L +
Sbjct: 77  ALLETPQRFFA---LVLTPTRELAFQISEQFEALGSSIGVQTAVIVGGIDMMAQSLALAK 133

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V+I TPGR++DH    K      ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 134 KPHVIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 193

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L++P +  V++   T E ++          SK        + 
Sbjct: 194 FLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQ---YYVFIPSKFKDSYLVYIL 250

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG ++Q  R+  L+ FK     +++
Sbjct: 251 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMNQNKRLGSLNKFKAKARSVLL 310

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GK+ T V + D++    I
Sbjct: 311 ATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 370

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI KK+         +    E++  AQ   AR    + QK      R++      +  
Sbjct: 371 EHLIGKKLPAFPTQEDEVMMLTERVAEAQ-RFARME--LQQKGDKKRSREEANEPDDAEG 427

Query: 421 PLKESEKISKLQQDIQE 437
            +    K++  ++  ++
Sbjct: 428 AMGVRNKVAGGKKKKRK 444


>gi|254830000|ref|ZP_05234655.1| hypothetical protein Lmon1_01525 [Listeria monocytogenes 10403S]
          Length = 470

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 135/477 (28%), Positives = 229/477 (48%), Gaps = 30/477 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+  +L LS ++  A+ + GY + TP+Q   IP+ L   D+   +QTG+GKTA+F +P+ 
Sbjct: 1   MN--NLKLSEEIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIA 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +E    +   P+ LI+ PTRELA QV       G+   +  A + G  PF  Q  +L 
Sbjct: 59  EQVEWEENK---PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELS 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+LDH  +G L ++ +  LV+DE D ML MGFI  +++I S +P  RQ 
Sbjct: 116 QKNHIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQN 175

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM +             KR + N       + +   +      +       + + 
Sbjct: 176 LFFSATMPE-------EMQDLIKRYQDNPMVIEMASEKTNPIFHVEMQTDNKEKTLKDVL 228

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +   + IIFCN K  V  L             IHG + Q  R + + +FK G  + ++
Sbjct: 229 ITENPDSAIIFCNTKNQVDELTDL---LDVKASKIHGGLRQEDRFRAMDDFKSGKSRFLI 285

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A RG+D+ +V  V N+D+P   ENY+HRIGRTGRAG+ GKA + V   +   +  I
Sbjct: 286 ATDVAGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDI 345

Query: 361 EKLIEKKVD--------WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK---STGFDRR 409
           E++++  ++         +  +  + +   +K    +     K N    K   + G  ++
Sbjct: 346 EEMLDVTIEKKRKPTVIEVKANEEAFHKKQQKRPTIKKARGEKLNKNIMKLYFNGGKKKK 405

Query: 410 KK--NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            +  ++    S +    +E I  +   I+++ +      G  PA +      K+  +
Sbjct: 406 IRAVDFVGTISKLEGITAEDIGII--TIEDHVSFVEILNGKGPAVLEMMRSRKVKGR 460


>gi|21593647|gb|AAM65614.1| replication protein A1-like [Arabidopsis thaliana]
          Length = 456

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 143/428 (33%), Positives = 222/428 (51%), Gaps = 18/428 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+  ++V A    G+  P+ IQ + +P  L+  DV G+AQTG+GKT +F +P+L 
Sbjct: 10  TFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQ 69

Query: 62  ---------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                      +KGR         +L PTRELA Q+A+ FE  G + +L  A+L GGI  
Sbjct: 70  ALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLFGGIDR 129

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNIT 171
             Q   L +   V++ TPGR+ DH +  K     +++ LV+DEADR+L+  F   +  I 
Sbjct: 130 MQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQIL 189

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
             +P  R+T LFSATMT +++K+    L+NP +IE  +  ST +T+           +K 
Sbjct: 190 EEIPRERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTL---KQQYRFVAAKY 246

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                  + S+      +IF         L   L   GF    I G + Q  R+  L+ F
Sbjct: 247 KDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKF 306

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   ++V +D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR G   +LV +
Sbjct: 307 KAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            +++    IEKLI KK+     +   +   LE++       A+K + +  K +G  +R+ 
Sbjct: 367 YELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERV-----AEAKKLSAMNMKESGGRKRRG 421

Query: 412 NYSSQKSH 419
               +   
Sbjct: 422 EDDEESER 429


>gi|225024978|ref|ZP_03714170.1| hypothetical protein EIKCOROL_01867 [Eikenella corrodens ATCC
           23834]
 gi|224942208|gb|EEG23417.1| hypothetical protein EIKCOROL_01867 [Eikenella corrodens ATCC
           23834]
          Length = 431

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 149/433 (34%), Positives = 236/433 (54%), Gaps = 11/433 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F+DL     ++ A+  AGY++PTPIQ++ +P  +   D+   AQTG+GKTA+F+LP +
Sbjct: 3   IQFSDLLHDKNLLAALRSAGYIEPTPIQVQALPAAIDGRDIMASAQTGSGKTAAFLLPSL 62

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
             I  +     + PR L+L PTRELAAQV  N + Y +N        L+GG  F  Q K 
Sbjct: 63  QRITRRSDKSGKGPRILVLTPTRELAAQVEKNAKIYAQNMKWLRTVTLVGGSSFGFQIKA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++DH   G++  + +E+LV+DEADRMLDMGFI  I+ I +  P +R
Sbjct: 123 LAKPIDLVVATPGRLMDHMRSGRIDFDRLEVLVLDEADRMLDMGFIDDIETIVAATPESR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    +NP+ IE+    +  +  E  F      +  +       
Sbjct: 183 QTLLFSATWDGAVGKLARRLTKNPEVIEIEREDNQGKIDEQLFYCDDKNHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   IIF + K     L   L ++GF+   +HG++ Q  R + L + ++G I++
Sbjct: 240 ILRDANIDQCIIFTSTKAMSEQLADELYEKGFAANCLHGDMPQNWRNRTLMDLRKGRIKV 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGRHG A T     +   + 
Sbjct: 300 LVATDVAARGIDVPSITHVINYDLPKQAEDYVHRIGRTGRAGRHGLALTFAEVNEYVAVH 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ----HNHARKNNPIPQKSTGFDRRKKNYS 414
            IEK + +K+      +  + P  ++    +        +K    P  S     R     
Sbjct: 360 KIEKYLGRKLPEFT--IEGMEPTRKRSKAPRKAKGGGWKQKGGRKPNGSGKPFGRPAGNP 417

Query: 415 SQKSHIPLKESEK 427
             K+  P  +  +
Sbjct: 418 RGKARKPAAQGRR 430


>gi|212692656|ref|ZP_03300784.1| hypothetical protein BACDOR_02153 [Bacteroides dorei DSM 17855]
 gi|237709374|ref|ZP_04539855.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA]
 gi|237725060|ref|ZP_04555541.1| ATP-dependent RNA helicase [Bacteroides sp. D4]
 gi|265754557|ref|ZP_06089609.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA]
 gi|212664734|gb|EEB25306.1| hypothetical protein BACDOR_02153 [Bacteroides dorei DSM 17855]
 gi|229436798|gb|EEO46875.1| ATP-dependent RNA helicase [Bacteroides dorei 5_1_36/D4]
 gi|229456430|gb|EEO62151.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA]
 gi|263234671|gb|EEZ20239.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA]
          Length = 624

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 132/368 (35%), Positives = 214/368 (58%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+SP+++ A+ + GY  P P+Q + IP +L   +DV  +AQTGTGKTA+F LP++
Sbjct: 3   TFEELGVSPEILKAIKEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             +E    + R+P+ LIL PTREL  Q+A +   Y K  +    L + G    E+Q + L
Sbjct: 63  QKIEV---KKRVPQALILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIESQIRML 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  +++ TPGR++D   R    +  I  +V+DEAD ML+MGF   I  I   VP  R 
Sbjct: 120 KAGVHIIVATPGRLIDLMERKVAKLETIADVVMDEADEMLNMGFTDSINAILEKVPEDRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSATM+ E+ ++++ +L + K I + T +   E  ++     Y  ++K      + +
Sbjct: 180 TLMFSATMSPEISRIAKKYLHDAKEITIGTKN---EGSKNVNHIAYLVHAKDKYAALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L + G++  ++HG + Q  R  ++  F++  +QL+
Sbjct: 237 ADYYPQIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRHLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKTGISIAIINLREKGKMRE 356

Query: 360 IEKLIEKK 367
           IE++I KK
Sbjct: 357 IERIINKK 364


>gi|169234830|ref|NP_001108495.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Rattus norvegicus]
 gi|165971701|gb|AAI58856.1| Ddx49 protein [Rattus norvegicus]
          Length = 480

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 157/446 (35%), Positives = 232/446 (52%), Gaps = 17/446 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L LS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAELRLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PTRELA Q+A+ F   GK   L   +++GG+    Q  +L R 
Sbjct: 64  LSE---DPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSRK 120

Query: 123 ADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI---QNITSLVPFTR 178
             V+I TPGR      +     M  I  LV+DEADR+L+ G   +    + I S VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQ 237
           QTLLFSAT+TD L+++       P   E        E ++  ++             L Q
Sbjct: 181 QTLLFSATLTDTLKELQGLATNQPFFWEAQATVRMVEQLDQRYLLVPEKVKDAYLVHLVQ 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             Q Q    + IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK  T +
Sbjct: 241 TFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALARFKSSTYR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI  +
Sbjct: 301 ILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLL 360

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK-NYSSQ 416
            AIE+ I++++  L  + + +   L      Q N  R+   I  +++ FD +K+ N   Q
Sbjct: 361 HAIEEEIKQQLAELAVEEAQVLQIL-----TQVNVVRRECEIKLEASHFDEKKEINKRKQ 415

Query: 417 ---KSHIPLKESEKISKLQQDIQEND 439
              +   P  E+++ ++L +  Q+N 
Sbjct: 416 MILEGKDPDLEAKRKAELAKIKQQNR 441


>gi|74210167|dbj|BAE21355.1| unnamed protein product [Mus musculus]
          Length = 690

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 135/441 (30%), Positives = 221/441 (50%), Gaps = 6/441 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 169 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 228

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 229 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 288

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 289 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 348

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 349 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 408

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 409 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 468

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 469 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 528

Query: 358 DAIEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N  L  L                  R++     K  GF+  +   +
Sbjct: 529 SDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 588

Query: 415 SQKSHIPLKESEKISKLQQDI 435
             + +  L + +  +K Q  +
Sbjct: 589 YDRGYSNLLKRDFGAKTQNGV 609


>gi|205364353|gb|ACI04543.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Rattus norvegicus]
          Length = 614

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 135/441 (30%), Positives = 221/441 (50%), Gaps = 6/441 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 154 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 213

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 214 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N  L  L                  R++     K  GF+  +   +
Sbjct: 454 SDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 513

Query: 415 SQKSHIPLKESEKISKLQQDI 435
             + +  L + +  +K Q  +
Sbjct: 514 YDRGYSSLLKRDFGAKTQNGV 534


>gi|159130845|gb|EDP55958.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus A1163]
          Length = 472

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 140/426 (32%), Positives = 226/426 (53%), Gaps = 8/426 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+  ++  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 53  SFKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQ 112

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    LIL PTRELA Q++ +FE  G   N+  A+++GG+   +Q+  L +
Sbjct: 113 AL---MEKPQSFFGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGK 169

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +    N     +  ++ LV+DEADR+LDM F P +  I  ++P  R+T
Sbjct: 170 KPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRT 229

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L NP R  V+  S+  +T+     +      K   +    L 
Sbjct: 230 FLFSATMSSKVESLQRASLSNPLR--VSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYLL 287

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ IIF         +   L   GF    +HG + Q +R+  L  F+  +  ++V
Sbjct: 288 NEFVGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILV 347

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V NFD+P  ++ Y+HR+GRT RAG+ G A + V + D++    I
Sbjct: 348 ATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRI 407

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  + KK+     +   +    E++  AQ     +     +K     + KK    ++S  
Sbjct: 408 EGALGKKLKEYELEKDEVMVLAERVGEAQRQAIMEMKNFDEKRGT--KAKKFGKGKRSRD 465

Query: 421 PLKESE 426
            + + E
Sbjct: 466 EMDQEE 471


>gi|297622829|ref|YP_003704263.1| DEAD/DEAH box helicase domain-containing protein [Truepera
           radiovictrix DSM 17093]
 gi|297164009|gb|ADI13720.1| DEAD/DEAH box helicase domain protein [Truepera radiovictrix DSM
           17093]
          Length = 442

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 149/430 (34%), Positives = 220/430 (51%), Gaps = 7/430 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L P++   +  AGY  PTPIQ   IP  L   D+ G+AQTGTGKTA+FVLP+L 
Sbjct: 7   SFHGFHLHPRLDQGLQAAGYTTPTPIQRAAIPAALAGRDLLGLAQTGTGKTAAFVLPLLH 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L  G       R L++ PTRELA Q+       G+   L  A + GG+    Q + L  
Sbjct: 67  RLMDGPRS--CVRALVVAPTRELAEQIHGEIGVLGRATGLRSATVYGGVGMAPQARALRG 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA++++  PGR+LDH  RG   +  +E+LV+DEAD M DMGF+P ++ +   VP   Q L
Sbjct: 125 GAEIIVACPGRLLDHLERGTGTLAKLEVLVLDEADHMFDMGFLPAVRKLVGRVPEGAQRL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  EL++      +   R  V       E       A Y    ++   L + L  
Sbjct: 185 LFSATMPPELRR----LAEALLRAPVTLQIGRTEAAATVSHALYPVAREQKTALLKHLLR 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +++ ++F   K+    L  SLE+  F   ++ GN+ Q  R K L  F+ G + ++VA
Sbjct: 241 HHDIRSALVFTRTKRGAKRLAESLERDNFFATSLQGNLSQTKRQKALDAFRAGEVHVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+  V HVFN+DVP  AE Y HRIGRTGRA R G+A T V  +D   +  IE
Sbjct: 301 TDIAARGIDVARVSHVFNYDVPTTAEAYTHRIGRTGRAARTGEACTFVTPDDEGVVRQIE 360

Query: 362 KLIEKKVDWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           + ++  +  +  +  + L+P     +  Q   A        KS G  R   + + +    
Sbjct: 361 RALKGPLRRVRLEGFAYLDPVAAPSESGQAARAAWPQGPRGKSPGHKRHAPSGAPRSGRS 420

Query: 421 PLKESEKISK 430
             +   + ++
Sbjct: 421 GAQTPARRAR 430


>gi|163800192|ref|ZP_02194093.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           AND4]
 gi|159175635|gb|EDP60429.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           AND4]
          Length = 443

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 126/417 (30%), Positives = 201/417 (48%), Gaps = 9/417 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + K T IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKDLGLDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      R PR +IL PTRELA QV           +   AL++GG  F  Q K L
Sbjct: 61  HKSLKNKSFSARDPRAVILAPTRELAKQVYGELRSMLGGLSYDAALVLGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH +   L ++ +E LV+DEADRMLD+GF P ++ I       R+
Sbjct: 121 RRYPKFIVATPGRLADHLDHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHKAAKHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +              +    S  E  +         +      + + +
Sbjct: 181 QTLMFSATLDHAEVNGIASEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILERV 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  IIF   + +   L + L ++     A+ GN++Q  R  I+S F+    +++
Sbjct: 241 LEEAEYRQVIIFTATRDDTERLTNKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RG+DI  V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D      
Sbjct: 301 VTTDVASRGIDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKR 360

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKIDIA-QHNHARKNNPIPQKSTGFDRRK 410
           +E  +++ + +     L G    L P   K D+  +    +K  P  +K+     ++
Sbjct: 361 VETYLQQDLSFSVLEGLKGKFKGLKP--RKPDVGNKKAETKKARPQAKKTPKKPAQR 415


>gi|119491286|ref|ZP_01623340.1| ATP-dependent RNA helicase [Lyngbya sp. PCC 8106]
 gi|119453450|gb|EAW34612.1| ATP-dependent RNA helicase [Lyngbya sp. PCC 8106]
          Length = 509

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 150/404 (37%), Positives = 228/404 (56%), Gaps = 13/404 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+S      +   G+ +PTP+QI++IP +L   D+ G AQTGTGKTA+F LP+L 
Sbjct: 41  SFVELGISEARAQHLESIGFTEPTPVQIQSIPQILSGRDIVGQAQTGTGKTAAFSLPILE 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+    LIL PTRELA QV D   K     +L V  + GG   E Q ++LER
Sbjct: 101 QIDHQAKDVQ---ALILTPTRELAMQVKDAIRKMSNERSLYVLTVYGGQSIERQVQRLER 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LD  +RGKL ++ I+ LV+DEAD ML MGFI  ++ I       RQT 
Sbjct: 158 GVHIVVGTPGRVLDLLSRGKLKLHGIKWLVLDEADEMLSMGFIQDVEKILEASSKDRQTA 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT+   + K+   FL +P  ++V  P +T + I          ++K      Q +  
Sbjct: 218 FFSATIEPSIWKLVRKFLNSPVTVKVEQPKTTPKQISQEVYTVPRGWTKAR--ALQPILE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  ++ I+F   K+    L   L+  G SV   HGN++Q  R ++L  F++  ++ +VA
Sbjct: 276 LEDPESAIVFVRTKQAAAELTSCLQGAGHSVDEYHGNLNQSQRERLLVRFRKRQVRWIVA 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P+ AE+Y+HRIGRTGRAGR GKA TL+   D + +  IE
Sbjct: 336 TDIAARGLDVDHLTHVINYDLPDNAESYVHRIGRTGRAGREGKAITLLQPMDRRKLRMIE 395

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           + +         + ++L  P ++  I      R  + + +  TG
Sbjct: 396 RHLRH-------NFTTLTIP-KRSQIEARYIERLKDKVLEALTG 431


>gi|70728927|ref|YP_258676.1| ATP-dependent RNA helicase SrmB [Pseudomonas fluorescens Pf-5]
 gi|68343226|gb|AAY90832.1| ATP-dependent RNA helicase SrmB [Pseudomonas fluorescens Pf-5]
          Length = 473

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 141/439 (32%), Positives = 216/439 (49%), Gaps = 16/439 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 29  FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 88

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L          +TLIL PTRELA Q     E++ +   +   L+ GG  F+ Q   L + 
Sbjct: 89  LIGPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 148

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI TPGR+L+  N G L +  +E+LV+DEADRMLDMGF   +Q +    P  +QT+L
Sbjct: 149 PDILIGTPGRMLEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTML 208

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT T                  +   S +            A +++    +   L + 
Sbjct: 209 FSAT-TGGSGLREMVAKVLNNPEHLQLNSVSQLNETTRQQIITADHNQHKEQIVNWLLAN 267

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T +  I+F N +     +   L  Q +    +HG  DQ+ R   +   K+G ++++VA+
Sbjct: 268 ETYQKAIVFTNTRAMADRIYGRLVAQDYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT 327

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + +IE+
Sbjct: 328 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 387

Query: 363 LIE-----KKVDWLNGDLSSLNPPLEKIDI---------AQHNHARKNNPIPQKSTGFDR 408
            ++     + +  + G  S                    A+ +  +     P K    +R
Sbjct: 388 YLKQSFERRTIKEVKGTYSGPKKVKASGKAVGVKKKKTDAKGDKKKAVAKAPTKRKTANR 447

Query: 409 RKK-NYSSQKSHIPLKESE 426
            K  +  SQ    PLK  +
Sbjct: 448 PKSDSLVSQDGLAPLKRRK 466


>gi|327403398|ref|YP_004344236.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327318906|gb|AEA43398.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 443

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 141/411 (34%), Positives = 217/411 (52%), Gaps = 6/411 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL +   ++ A+ + GY  PT IQ     +++   DV G+AQTGTGKT +++LP L
Sbjct: 1   MTFHDLNIKKPILTALDELGYTTPTTIQSAGFSVMMSGKDVIGLAQTGTGKTLAYLLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++ +    +   P+ LI+ PTREL  QV    EK   + NL V  + GG     Q   + 
Sbjct: 61  SLWKFS--KEPHPQILIIVPTRELVVQVVREVEKLTPHMNLAVGGVYGGANINTQASMVL 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVL+ TPGRI D    G L + + + +VIDE D  L +GF P +  I  L+P  RQ 
Sbjct: 119 QGLDVLVGTPGRIFDLTANGSLQLKHAKKVVIDEVDETLSLGFRPQLMRIFDLLPEKRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+++E++     F +NP R+E     +  E I+   +A     SK   L   L  
Sbjct: 179 LLFSATLSEEVEGFLGVFFENPIRVEAARVGTPLEKIKQEAIAVPNFTSKVNLLKHMLET 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +QD  +  +   ++              G  +  IH +  Q  R   +++F+ G  ++++
Sbjct: 239 NQDMSRVLVFVSSRVFADKLYEELEPVFGVELGVIHSSKAQNFRFNAVNHFQNGIYRVLI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+D+ DV HVFNFD+P+  ENYIHRIGRTGR  + G A + + + D +    I
Sbjct: 299 ATDLIARGIDVTDVTHVFNFDIPDNQENYIHRIGRTGRQDKEGHAISFLTERDHEQFVKI 358

Query: 361 EKLIEKKVDWL----NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           E+ ++KKV+        +LS++    EKI ++  N   K+    +    F 
Sbjct: 359 EEFMDKKVEIQAFPEEAELSTVILEFEKIQVSMKNTLVKSPSKDEAGPAFH 409


>gi|283834551|ref|ZP_06354292.1| ATP-dependent RNA helicase RhlB [Citrobacter youngae ATCC 29220]
 gi|291069681|gb|EFE07790.1| ATP-dependent RNA helicase RhlB [Citrobacter youngae ATCC 29220]
          Length = 422

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 138/411 (33%), Positives = 209/411 (50%), Gaps = 9/411 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKV+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVIEALENKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                     ++V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADSKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P T
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPT 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 TQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     I+F N K    ++  SL   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIVFANTKHRCEDIWGSLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
            AIE  I   +     +    ++ L  PL        N  R+    P+   
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRAGGAPRNRR 419


>gi|30584123|gb|AAP36310.1| Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA
           helicase, 68kDa) [synthetic construct]
 gi|60653929|gb|AAX29657.1| DEAD box polypeptide 5 [synthetic construct]
          Length = 615

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 135/441 (30%), Positives = 221/441 (50%), Gaps = 6/441 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 154 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 213

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 214 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N  L  L                  R++     K  GF+  +   +
Sbjct: 454 SDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 513

Query: 415 SQKSHIPLKESEKISKLQQDI 435
             + +  L + +  +K Q  +
Sbjct: 514 YDRGYSSLLKRDFGAKTQNGV 534


>gi|226021|prf||1406327A growth regulated nuclear 68 protein
          Length = 594

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 135/441 (30%), Positives = 221/441 (50%), Gaps = 6/441 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 74  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 133

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 134 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 193

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 194 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 253

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 254 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 313

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 314 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 373

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 374 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 433

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N  L  L                  R++     K  GF+  +   +
Sbjct: 434 SDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 493

Query: 415 SQKSHIPLKESEKISKLQQDI 435
             + +  L + +  +K Q  +
Sbjct: 494 YDRGYSSLLKRDFGAKTQNGV 514


>gi|330684829|gb|EGG96522.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU121]
          Length = 509

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 139/441 (31%), Positives = 229/441 (51%), Gaps = 14/441 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S K V  +   G+ +PTPIQ  +IP  L+ HD+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDKTVQTLESMGFKEPTPIQKDSIPYALEGHDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +  ++LIL PTRELA QVA+  + + K  N+ V  + GG+P E Q K L++
Sbjct: 63  KVVGE----QGVQSLILAPTRELAMQVAEQLKVFSKGQNVQVVTVFGGMPIERQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L  N+I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     +     +  K           
Sbjct: 179 MLFSATMPKAIQTLVQQFMKTPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFT--NFLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 237 VHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 297 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
                  D  N  +++L PP  K ++ +         +    +  +  +    S +    
Sbjct: 357 -------DANNRRMTALRPPHRK-EVLKAREDDIKEKVQNWMSKDNEPRLQRISTELLEE 408

Query: 422 LKESEKISKLQQDIQENDADS 442
             + E ++ L Q++ E + + 
Sbjct: 409 YNDVELVASLLQELVEANDEV 429


>gi|282876512|ref|ZP_06285378.1| putative ATP-dependent RNA helicase DeaD [Staphylococcus
           epidermidis SK135]
 gi|281294764|gb|EFA87292.1| putative ATP-dependent RNA helicase DeaD [Staphylococcus
           epidermidis SK135]
 gi|329735713|gb|EGG71996.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU028]
          Length = 509

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 138/411 (33%), Positives = 214/411 (52%), Gaps = 23/411 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S K V  +   G+ +PTPIQ  +IP  L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +  ++LIL PTRELA QVA+   ++ K   + V  + GG+P E Q K L+R
Sbjct: 63  KVVGQ----QGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKR 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L    I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     +     +  K           
Sbjct: 179 MLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFT--NFLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 237 VHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 297 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK----------IDIAQHNHARKNNPIPQK 402
                  D  N  + +L PP  K           D  Q+  +R+N P  Q+
Sbjct: 357 -------DVNNRRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPRLQR 400


>gi|260857814|ref|YP_003231705.1| ATP-dependent RNA helicase RhlB [Escherichia coli O26:H11 str.
           11368]
 gi|260870505|ref|YP_003236907.1| ATP-dependent RNA helicase RhlB [Escherichia coli O111:H- str.
           11128]
 gi|257756463|dbj|BAI27965.1| ATP-dependent RNA helicase RhlB [Escherichia coli O26:H11 str.
           11368]
 gi|257766861|dbj|BAI38356.1| ATP-dependent RNA helicase RhlB [Escherichia coli O111:H- str.
           11128]
 gi|323155182|gb|EFZ41366.1| ATP-dependent RNA helicase rhlB [Escherichia coli EPECa14]
 gi|323177790|gb|EFZ63374.1| ATP-dependent RNA helicase rhlB [Escherichia coli 1180]
          Length = 421

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 138/413 (33%), Positives = 207/413 (50%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKYRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGAPRNRRRSG 421


>gi|251812202|ref|ZP_04826675.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060]
 gi|251804299|gb|EES56956.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060]
          Length = 528

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 138/411 (33%), Positives = 214/411 (52%), Gaps = 23/411 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S K V  +   G+ +PTPIQ  +IP  L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 22  NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 81

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +  ++LIL PTRELA QVA+   ++ K   + V  + GG+P E Q K L+R
Sbjct: 82  KVVGQ----QGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKR 137

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L    I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 138 GPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 197

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     +     +  K           
Sbjct: 198 MLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFT--NFLD 255

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 256 VHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVA 315

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 316 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 375

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK----------IDIAQHNHARKNNPIPQK 402
                  D  N  + +L PP  K           D  Q+  +R+N P  Q+
Sbjct: 376 -------DVNNRRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPRLQR 419


>gi|239637375|ref|ZP_04678357.1| cold-shock DEAD box protein A [Staphylococcus warneri L37603]
 gi|239596975|gb|EEQ79490.1| cold-shock DEAD box protein A [Staphylococcus warneri L37603]
          Length = 509

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 139/441 (31%), Positives = 229/441 (51%), Gaps = 14/441 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S K V  +   G+ +PTPIQ  +IP  L+ HD+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDKTVQTLESMGFKEPTPIQKDSIPYALEGHDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +  ++LIL PTRELA QVA+  + + K  N+ V  + GG+P E Q K L++
Sbjct: 63  KVVGE----QGVQSLILAPTRELAMQVAEQLKVFSKGQNVQVVTVFGGMPIERQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L  N+I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     +     +  K           
Sbjct: 179 MLFSATMPKAIQTLVQQFMKTPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFT--NFLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 237 VHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 297 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
                  D  N  +++L PP  K ++ +         +    +  +  +    S +    
Sbjct: 357 -------DANNRRMTALRPPHRK-EVLKAREDDIKEKVQNWMSKDNEPRLQRISTELLEE 408

Query: 422 LKESEKISKLQQDIQENDADS 442
             + E ++ L Q++ E + + 
Sbjct: 409 YNDVELVASLLQELVEANDEV 429


>gi|145517226|ref|XP_001444496.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124411918|emb|CAK77099.1| unnamed protein product [Paramecium tetraurelia]
          Length = 434

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 125/382 (32%), Positives = 202/382 (52%), Gaps = 4/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL LS  ++  +   G+ +P+ IQ K I  ++   DV   AQ+GTGKT +F +  L 
Sbjct: 57  TFEDLTLSKDLLRGIFSYGFERPSAIQQKAIKPIILGKDVLAQAQSGTGKTGTFTIGALQ 116

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  + + ++    IL P RELA Q+ D  +  G+  N+     IGG   +   +K ++
Sbjct: 117 RIDPNQRKTQVI---ILAPVRELAKQIYDVVKGIGQYLNIEAFCCIGGTSTQETREKCKQ 173

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR++D      L    + +LV+DEAD+MLD GF      I  +VP   Q  
Sbjct: 174 GVHIIIATPGRLIDMMKNKYLDATFMRLLVVDEADQMLDQGFSDNFAEILKMVPGDIQIA 233

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   E+ ++S+ FL++     +             F     Q  +K  +L + L  
Sbjct: 234 LFSATFPQEIIELSKQFLRDGTAKILVKKEQLTLEGIRQFYIAIQQEDQKFKVLVE-LYK 292

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   I+FCN KK V +L   L  +GF+V  IH  ++Q+ R +++  FK+G  +++V+
Sbjct: 293 NLTVSQSILFCNSKKTVDDLYDKLTAEGFTVSKIHSQMEQKEREQVMQEFKKGAARILVS 352

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+D+  +  V N++ P   E YIHR+GR GR GR G A  +VA+++   +  +E
Sbjct: 353 TDLMGRGIDVQQLSLVINYEFPRLKEQYIHRVGRAGRYGRKGVAINMVAQQEANLLLEVE 412

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           K    K+D +  DL+ +   L 
Sbjct: 413 KYYNTKIDEMPKDLAEVEKELS 434


>gi|326930919|ref|XP_003211585.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Meleagris
           gallopavo]
          Length = 597

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 136/436 (31%), Positives = 226/436 (51%), Gaps = 6/436 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 84  INFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 143

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 144 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRD 203

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 204 LERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 263

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL+    I +     +A       V       K   L++ +
Sbjct: 264 QTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLM 323

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+   +L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 324 EEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 383

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 384 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 443

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           + +  ++ +    +N  L  L   +E     +    R++     K  GF   ++  + ++
Sbjct: 444 NDLISVLREANQAINPKLLQL---IEDRGSGRSRGDRRDRYSAGKRGGFSSFRERENFER 500

Query: 418 SHIPLKESEKISKLQQ 433
           ++  L + +  +K Q 
Sbjct: 501 TYGALGKRDFGAKAQN 516


>gi|45382259|ref|NP_990158.1| probable ATP-dependent RNA helicase DDX5 [Gallus gallus]
 gi|5114446|gb|AAD40318.1|AF158370_1 DEAD-box RNA helicase [Gallus gallus]
          Length = 595

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 136/436 (31%), Positives = 226/436 (51%), Gaps = 6/436 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 82  INFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 141

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 142 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRD 201

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 202 LERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 261

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL+    I +     +A       V       K   L++ +
Sbjct: 262 QTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLM 321

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+   +L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 322 EEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 381

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 382 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 441

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           + +  ++ +    +N  L  L   +E     +    R++     K  GF   ++  + ++
Sbjct: 442 NDLISVLREANQAINPKLLQL---IEDRGSGRSRGDRRDRYSAGKRGGFSSFRERENFER 498

Query: 418 SHIPLKESEKISKLQQ 433
           ++  L + +  +K Q 
Sbjct: 499 TYGALGKRDFGAKAQN 514


>gi|313633504|gb|EFS00323.1| ATP-dependent RNA helicase DbpA [Listeria seeligeri FSL N1-067]
 gi|313638189|gb|EFS03441.1| ATP-dependent RNA helicase DbpA [Listeria seeligeri FSL S4-171]
          Length = 470

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 134/477 (28%), Positives = 223/477 (46%), Gaps = 30/477 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+  +L LS ++  A+ + GY + TP+Q + IP+ L   D+   +QTG+GKTA+F +P+ 
Sbjct: 1   MN--NLKLSEEIKRAINELGYKEATPVQKEVIPVALTGKDIVAKSQTGSGKTAAFAIPIA 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +   P+ LI+ PTREL  QV       G+   +  A + G  PF  Q  +L 
Sbjct: 59  EQVIWEENK---PQALIIVPTRELGVQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELS 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+LDH  +G L ++ +  LV+DE D ML MGFI  +++I   +P  RQ 
Sbjct: 116 QKNHIVVGTPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLSMGFIDQVEDILQFLPKKRQN 175

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM D             KR + +         +   +      ++      Q + 
Sbjct: 176 LFFSATMPD-------EMQDLIKRYQEDPVVIEMAAEKTNPITHIEMQTENKEKTLQDVL 228

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +   + IIFCN K  V  L         +   IHG + Q  R + + +FK G  + ++
Sbjct: 229 ITENPDSAIIFCNTKNQVDELSDL---LQVNAAKIHGGLRQEERFRAMDDFKSGKSRFLI 285

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A RG+D+ +V  V N+D+P   ENY+HRIGRTGRAG  GKA + V   +   +  I
Sbjct: 286 ATDVAGRGIDVENVTLVINYDLPIEKENYVHRIGRTGRAGNSGKAISFVKTNENPLLRDI 345

Query: 361 EKLIEKKVD--------WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK---STGFDRR 409
           E ++   ++         +     +     +K    +     K N    K   + G  ++
Sbjct: 346 EDMLNITIEKKRKPTIIEVKASEEAFRKKQQKRPTIKKARGEKLNKNIMKLYFNGGKKKK 405

Query: 410 KK--NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            +  ++    S +    SE I  +   I+++ +      G  PA +      K+  +
Sbjct: 406 IRAVDFVGTISKLEGITSEDIGII--TIEDHVSFVEILNGKGPAVLEMMRSRKVKGR 460


>gi|262273619|ref|ZP_06051433.1| ATP-dependent RNA helicase RhlB [Grimontia hollisae CIP 101886]
 gi|262222597|gb|EEY73908.1| ATP-dependent RNA helicase RhlB [Grimontia hollisae CIP 101886]
          Length = 434

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 129/403 (32%), Positives = 207/403 (51%), Gaps = 10/403 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD GL   V+  + + G+   TPIQ   +P++L   D+ G AQTGTGKT +F+     
Sbjct: 12  KFADFGLHADVLKGLEEKGFHNCTPIQALALPVLLTGQDIAGQAQTGTGKTMAFLTATFH 71

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +   PR +I+ PTRELA Q+ ++      + +LT  L  GG  +E Q  
Sbjct: 72  HLLTTEAPADRKKNCPRAIIMAPTRELAIQIYNDAAPLLASTSLTAGLAYGGEAYEKQKD 131

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GRI+D + +  + +  I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 132 TLENGVDILIGTCGRIIDFYKQRVIDLRCIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 191

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T   +     F       E        +T        +   +K    L Q
Sbjct: 192 SERLNMLFSATLSYRVQELAFEHMTN-PEHVVVEPEQKTGHRIKEELFYPSNKDKMRLLQ 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++  +  I+F N K    ++   L   G     + G++ Q+ R+KIL  F +G++ 
Sbjct: 251 TLIEEEWPERAIVFANTKHRCEDIWGHLAADGLRAGLLTGDVPQKKRVKILEEFTKGSLD 310

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 311 ILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGASISFACEEYAVNL 370

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKN 396
            AIE+ I+  +     +    L+ L  P+ K+   +  ++R++
Sbjct: 371 PAIEEYIDHTIPVSEYNEDALLTDLPAPI-KVQRPRQVNSRRS 412


>gi|225456912|ref|XP_002277894.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 611

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 129/378 (34%), Positives = 203/378 (53%), Gaps = 3/378 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--L 60
           F +       +  +   G+V+PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP    
Sbjct: 191 FQEANFPGYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 250

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +    R   P  L+L PTRELA Q+ +   K+G    +    + GG P   Q + L+
Sbjct: 251 VSAQPPLVRGEGPIVLVLAPTRELAVQIQEEALKFGSFTKIRSTCIYGGAPKGPQIRDLQ 310

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   RQT
Sbjct: 311 RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQT 370

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L +SAT   E++ ++  FL+NP ++ + +    A       V    +  K    L +LL+
Sbjct: 371 LYWSATWPREVETLARQFLRNPYKVIIGSQDLKANQSIQQVVEVVTETEKY-NRLIRLLK 429

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF   KK    +   +   G+   +IHG+ +Q  R  +L+ FK G   +M 
Sbjct: 430 EVMDGSRILIFMETKKGCDQVTRQMRMDGWPSLSIHGDKNQAERDWVLAEFKSGRSPIMT 489

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+  V N+D P+  E+Y+HRIGRTGRAG  G A T     + K    +
Sbjct: 490 ATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAITFFTHSNAKFARDL 549

Query: 361 EKLIEKKVDWLNGDLSSL 378
            K++++    ++  LS++
Sbjct: 550 IKILQEAGQVVSPALSAM 567


>gi|152977712|ref|YP_001343341.1| ATP-dependent RNA helicase SrmB [Actinobacillus succinogenes 130Z]
 gi|150839435|gb|ABR73406.1| DEAD/DEAH box helicase domain protein [Actinobacillus succinogenes
           130Z]
          Length = 440

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 136/435 (31%), Positives = 228/435 (52%), Gaps = 9/435 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F D  L+P+++ A+   GY +PT IQ ++IP+ ++  D+ G A TGTGKTA+F+LP + 
Sbjct: 5   TFDDFDLAPELLKALAKKGYDRPTAIQQESIPVAMEEQDLLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR L+L PTRELA QVA+   +  +   L++A + GG+ ++   +   
Sbjct: 65  HLLDYPRKKPGAPRILVLTPTRELAMQVAEQAGELAQFTKLSIATITGGVAYQNHGEVFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR+L +         ++EIL+ DEADRML MGF    + I +   + +QT
Sbjct: 125 KNQDLVVATPGRLLQYIKEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL +   +        ++    S  E  +      +A   +    L     
Sbjct: 185 LLFSATLEGELLQDFAD-RILDNPAKIAVEPSRRERKKINQWYYHADSVEHKIKLVARFI 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +Q+ +  GI+F  ++++V  L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 244 AQENVTKGILFVRRREDVRELSETLRKRGIRSTYLEGEMAQTQRNNSIDKLKNGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D + +  I
Sbjct: 304 ATDVAARGIDIDDISHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVENHDYRLLGKI 363

Query: 361 EKLIEK--KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           ++   +  K   + G     +PP +                 +K      ++K    +K 
Sbjct: 364 KRYTGELLKPRIIEGLEPRTSPPKD-----GETKTVSKKAKVRKKEKLVEKRKAEQKKKV 418

Query: 419 HIPLKESEKISKLQQ 433
            +  K+S+ I K ++
Sbjct: 419 KLRHKDSKNIGKRRK 433


>gi|256823808|ref|YP_003147771.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256797347|gb|ACV28003.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 420

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 131/417 (31%), Positives = 214/417 (51%), Gaps = 15/417 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGL PK++ AV D G+   TPIQ K++PL+L+  +V G AQTGTGKT +F+L ++  
Sbjct: 11  FSDLGLDPKLLKAVADLGFEYCTPIQAKSLPLLLKGQNVAGQAQTGTGKTIAFLLAIMND 70

Query: 63  ----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                E    R   PR+LI+ PTRELA Q+A +  +  K+ +L + ++ GG   E Q ++
Sbjct: 71  ILTLPEIEGRRKNEPRSLIMAPTRELAVQIAKDAVQLAKHTDLKIRVVYGGEDHEKQRQQ 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+LI T GR++D+F      +  I+ +V+DEADRM D+GFI  I+ + + +P   
Sbjct: 131 LIDGVDILIGTTGRLIDYFKTKAFGLEAIDSVVLDEADRMFDLGFIKDIRYLFNRMPPAT 190

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             L    + T   +     +        V   +      +      Y    +    L   
Sbjct: 191 DRLNMLFSATLSHRVQELAYEHMNNPQHVQVQTQQVSANKIREALFYPSREEAL-PLLVG 249

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +   +  I+F N K+   ++   L         + G++ Q+ R+++L   K   + +
Sbjct: 250 LMQRLEPEKSIVFTNTKRAAEHVWACLAGNDIKAGLLTGDVHQKKRLRLLDELKNDDVSV 309

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V +D+AARGL I  V HVFN+ +P+ AE+Y+HRIGRT RAG  G A +   ++   ++ 
Sbjct: 310 LVCTDVAARGLHIDGVTHVFNYHLPDDAEDYVHRIGRTARAGAEGDAISFAGEDFAMNLT 369

Query: 359 AIEKLIEKKVDWLNGD---LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           AIE+ +   +  L      L++L P L           ++ +P  ++  G  R  +N
Sbjct: 370 AIEQYVGHNLPKLEIKSEYLANLKPSL-------PIQQKRRHPTQRRGGGKPRHPRN 419


>gi|254520792|ref|ZP_05132848.1| DEAD-box ATP dependent DNA helicase [Clostridium sp. 7_2_43FAA]
 gi|226914541|gb|EEH99742.1| DEAD-box ATP dependent DNA helicase [Clostridium sp. 7_2_43FAA]
          Length = 526

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 136/372 (36%), Positives = 224/372 (60%), Gaps = 6/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++LGL   ++ ++ D G+ KP+ IQ + IP+ +Q +D+ G AQTGTGKTA+F     
Sbjct: 4   IKFSNLGLKDTLLKSINDLGFEKPSQIQAEAIPVAIQGYDLIGQAQTGTGKTAAFG---- 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +    ++      +IL PTRELA QV D  ++  K  +LT+  + GG P   Q + L+
Sbjct: 60  CGIINHISKKSGLSAIILAPTRELAIQVNDELKRLSKYDDLTILPVYGGDPITNQIRALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R  ++++ TPGR+LDH  RG + ++ I+ LV+DEAD ML+MGFI  +++I   +P  RQT
Sbjct: 120 RNVNIVVGTPGRVLDHIKRGTIKLDQIKFLVLDEADEMLNMGFIDDLEDIIKQLPSERQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D+++K+++ +++   +    +   T+ T+       +    K        + 
Sbjct: 180 LLFSATMPDQIRKLAKRYMKPDAKHI--SIKKTSMTVSTISQNFFEVSHKTRFEALCRVL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             DT  + IIFC  KK V  L   ++ +G+ V  +HG++ Q  R++ L  FKEG++  +V
Sbjct: 238 DFDTPSSAIIFCRTKKGVDELVEGMQSRGYVVEGMHGDMSQAHRLRTLKKFKEGSLNYLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+D+P   E+Y+HRIGRTGRA R G A++LV+ ++   +  I
Sbjct: 298 ATDVAARGIDVEGITHVINYDLPQDVESYVHRIGRTGRANREGIAYSLVSPKEYSMLKQI 357

Query: 361 EKLIEKKVDWLN 372
           + + +  +   N
Sbjct: 358 KSVTKSDISRKN 369


>gi|241949195|ref|XP_002417320.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223640658|emb|CAX44953.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 543

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 124/415 (29%), Positives = 195/415 (46%), Gaps = 9/415 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L  +++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTASF++P L 
Sbjct: 31  SFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQ 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    +V+    LIL PTRELA Q +      GK+      +  GG        +L  
Sbjct: 91  LVKPKLNKVQ---ALILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIVRLHD 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD   R  + ++   + V+DEAD+ML   F   I+ I    P  RQ L
Sbjct: 148 PVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKMLSREFKGIIEQILEFFPPNRQAL 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F+                T++           K+       L S
Sbjct: 208 LFSATFPLAVKS----FMDKHLTKPYEINLMDELTLKGISQFYAFVEEKQKLHCLNTLFS 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S    H  + Q++R K+   F++G ++ +V 
Sbjct: 264 KLQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVC 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L++  D   +  IE
Sbjct: 324 SDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYSLYKIE 383

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           + +  ++  +   +       E  D        + + +P+ +     +   Y  Q
Sbjct: 384 QELGTEIKPIPATIDKSLYVAENADAVPRPF--RIDELPKGNETVHNKGYQYKGQ 436


>gi|164659183|ref|XP_001730716.1| hypothetical protein MGL_2170 [Malassezia globosa CBS 7966]
 gi|159104613|gb|EDP43502.1| hypothetical protein MGL_2170 [Malassezia globosa CBS 7966]
          Length = 502

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 115/376 (30%), Positives = 185/376 (49%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF D  L  +++  + +AG+  P+PIQ + IP+ L   DV   A+ GTGKTA++V+P L 
Sbjct: 31  DFEDFFLKRELLMGIFEAGFEHPSPIQEEAIPIALSGRDVLARAKNGTGKTAAYVIPTLE 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +   + +++     +L PTRELA Q +   +  GK+  + + +  GG   +    +L +
Sbjct: 91  RVNTKKNKIQAV---LLVPTRELALQTSQVAKTLGKHLGIEIMVSTGGTTLKDDILRLGQ 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD  ++G   ++     V+DEAD++L   F P ++ +  L+P  RQ +
Sbjct: 148 TVHILVGTPGRILDLASKGIADLSQCTTYVMDEADKLLSPEFTPVMEQLLGLLPKERQVM 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F                 T+            ++       L S
Sbjct: 208 LFSATFPLIVKD----FKDKHMVKPYEINLMDELTLRGVTQYYAFVEERQKVHCLNTLFS 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S    H  + Q  R ++  +F+ G  + +V 
Sbjct: 264 KLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQAHRNRVFHDFRNGACRNLVC 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  IE
Sbjct: 324 SDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHMGLAINLITYEDRFNLYRIE 383

Query: 362 KLIEKKVDWLNGDLSS 377
           + +  +V  +   +  
Sbjct: 384 QELGTEVQPIPATIDK 399


>gi|58581173|ref|YP_200189.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84623095|ref|YP_450467.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|58425767|gb|AAW74804.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84367035|dbj|BAE68193.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 634

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 142/371 (38%), Positives = 221/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGLS  V+ AV + GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+ 
Sbjct: 11  FADLGLSGAVMRAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
            +  + +   P+ L+L PTRELA QVA+ F+KY +       L +  G P+  Q   L+R
Sbjct: 71  ADLNQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  
Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVA 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++++ +L++P  + +   ++T+  I   +      +          ++ 
Sbjct: 188 LFSATMPPAIRRIAQTYLKDPAEVIIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEP 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D M   IIF   K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++VA
Sbjct: 248 FDGM---IIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A   V   +   + +IE
Sbjct: 305 TDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTLREKGMLRSIE 364

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 365 RATRQPIEEMQ 375


>gi|26450667|dbj|BAC42444.1| putative replication protein A1 [Arabidopsis thaliana]
 gi|28951031|gb|AAO63439.1| At5g60990 [Arabidopsis thaliana]
          Length = 456

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 143/428 (33%), Positives = 223/428 (52%), Gaps = 18/428 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+  ++V A    G+  P+ IQ + +P  L+  DV G+AQTG+GKT +F +P+L 
Sbjct: 10  TFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQ 69

Query: 62  ---------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                      +KGR         +L PTRELA Q+A+ FE  G + +L  A+L+GGI  
Sbjct: 70  ALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDR 129

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNIT 171
             Q   L +   V++ TPGR+ DH +  K     +++ LV+DEADR+L+  F   +  I 
Sbjct: 130 MQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQIL 189

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
             +P  R+T LFSATMT +++K+    L+NP +IE  +  ST +T+           +K 
Sbjct: 190 EEIPLERETFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTL---KQQYRFVAAKY 246

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                  + S+      +IF         L   L   GF    I G + Q  R+  L+ F
Sbjct: 247 KDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKF 306

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   ++V +D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR G   +LV +
Sbjct: 307 KAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            +++    IEKLI KK+     +   +   LE++       A+K + +  K +G  +R+ 
Sbjct: 367 YELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERV-----AEAKKLSAMNMKESGGRKRRG 421

Query: 412 NYSSQKSH 419
               +   
Sbjct: 422 EDDEESER 429


>gi|83942539|ref|ZP_00955000.1| DEAD/DEAH box helicase [Sulfitobacter sp. EE-36]
 gi|83846632|gb|EAP84508.1| DEAD/DEAH box helicase [Sulfitobacter sp. EE-36]
          Length = 433

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 147/391 (37%), Positives = 227/391 (58%), Gaps = 11/391 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  +GL  ++V A+ + G   PTPIQ + IP  +   DV G+AQTGTGKTA+F +P++ 
Sbjct: 3   DFEMMGLPRRLVKALTNMGMTDPTPIQKQAIPHGMNGRDVMGLAQTGTGKTAAFGIPLVA 62

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            + +  AR         +L PTRELA Q+ +N + + +   L   +++GG     Q K++
Sbjct: 63  QMLEREARPEPRTVRGLVLAPTRELANQIMENLKGFCEGTQLKTMMIVGGQSINPQIKRM 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+L+ TPGR+LD  +R  +L++    LV+DEAD+MLDMGFI  ++ I +++P  RQ
Sbjct: 123 ERGVDLLVATPGRLLDLMDRRAVLLHKTTFLVLDEADQMLDMGFIHDLRKIAAVLPKERQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + +++ ++L +P RIEV+ P   A+ I            K   +     
Sbjct: 183 TMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKITQEVHFIAKAEKKSLLIELL-- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             + T +  ++F   K     L   L K GF   +IHGN  Q  R + + +FK+G + ++
Sbjct: 241 -GKHTEERALVFGRTKHGCEKLMKDLVKAGFKAASIHGNKSQGQRDRAIESFKKGEVTVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIPDV HV+N+++PN  +NY+HRIGRT RAG+ G A    A +++  +  
Sbjct: 300 VATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGELKD 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           I+K ++  +   +G       P E ID    
Sbjct: 360 IQKTMKISIPVASGR------PWEAIDEPAK 384


>gi|83953760|ref|ZP_00962481.1| DEAD/DEAH box helicase [Sulfitobacter sp. NAS-14.1]
 gi|83841705|gb|EAP80874.1| DEAD/DEAH box helicase [Sulfitobacter sp. NAS-14.1]
          Length = 444

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 147/391 (37%), Positives = 227/391 (58%), Gaps = 11/391 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  +GL  ++V A+ + G   PTPIQ + IP  +   DV G+AQTGTGKTA+F +P++ 
Sbjct: 14  DFEMMGLPRRLVKALTNMGMTDPTPIQKQAIPHGMNGRDVMGLAQTGTGKTAAFGIPLVA 73

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            + +  AR         +L PTRELA Q+ +N + + +   L   +++GG     Q K++
Sbjct: 74  QMLEREARPEPRTVRGLVLAPTRELANQIMENLKGFCEGTQLKTMMIVGGQSINPQIKRM 133

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+L+ TPGR+LD  +R  +L++    LV+DEAD+MLDMGFI  ++ I +++P  RQ
Sbjct: 134 ERGVDLLVATPGRLLDLMDRRAVLLHKTTFLVLDEADQMLDMGFIHDLRKIAAVLPKERQ 193

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + +++ ++L +P RIEV+ P   A+ I            K   +     
Sbjct: 194 TMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKITQEVHFIAKAEKKSLLIELL-- 251

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             + T +  ++F   K     L   L K GF   +IHGN  Q  R + + +FK+G + ++
Sbjct: 252 -GKHTEERALVFGRTKHGCEKLMKDLVKAGFKAASIHGNKSQGQRDRAIESFKKGEVTVL 310

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIPDV HV+N+++PN  +NY+HRIGRT RAG+ G A    A +++  +  
Sbjct: 311 VATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGELKD 370

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           I+K ++  +   +G       P E ID    
Sbjct: 371 IQKTMKISIPVASGR------PWEAIDEPAK 395


>gi|68474158|ref|XP_718788.1| hypothetical protein CaO19.6197 [Candida albicans SC5314]
 gi|68474329|ref|XP_718704.1| hypothetical protein CaO19.13577 [Candida albicans SC5314]
 gi|74656470|sp|Q5AAW3|DHH1_CANAL RecName: Full=ATP-dependent RNA helicase DHH1
 gi|46440487|gb|EAK99792.1| hypothetical protein CaO19.13577 [Candida albicans SC5314]
 gi|46440576|gb|EAK99880.1| hypothetical protein CaO19.6197 [Candida albicans SC5314]
          Length = 549

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 124/415 (29%), Positives = 195/415 (46%), Gaps = 9/415 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L  +++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTASF++P L 
Sbjct: 31  SFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQ 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    +V+    LIL PTRELA Q +      GK+      +  GG        +L  
Sbjct: 91  LVKPKLNKVQ---ALILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIVRLHD 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD   R  + ++   + V+DEAD+ML   F   I+ I    P  RQ L
Sbjct: 148 PVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKMLSREFKGIIEQILEFFPPNRQAL 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F+                T++           K+       L S
Sbjct: 208 LFSATFPLAVKS----FMDKHLTKPYEINLMDELTLKGISQFYAFVEEKQKLHCLNTLFS 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S    H  + Q++R K+   F++G ++ +V 
Sbjct: 264 KLQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVC 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L++  D   +  IE
Sbjct: 324 SDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYSLYKIE 383

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           + +  ++  +   +       E  D        + + +P+ +     +   Y  Q
Sbjct: 384 QELGTEIKPIPATIDKSLYVAENADAVPRPF--RIDELPKGNETVHNKGYQYKGQ 436


>gi|71275478|ref|ZP_00651764.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Dixon]
 gi|71900655|ref|ZP_00682780.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|170729397|ref|YP_001774830.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
 gi|71163778|gb|EAO13494.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Dixon]
 gi|71729590|gb|EAO31696.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|167964190|gb|ACA11200.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
          Length = 446

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 151/423 (35%), Positives = 230/423 (54%), Gaps = 9/423 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LGL P ++ A+ + GY  PTPIQ + IPL L  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MNFETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L    + V    PR L+L PTRELA QV D+   Y K   ++ A++ GG+    Q   
Sbjct: 61  QRLMAASSNVGAGKPRALVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLDV 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+LI  PGR++DH  R  + ++ + ILV+DEADRMLDMGF+  I+ I   +P   
Sbjct: 121 LRRGVDLLIACPGRLIDHIERRSVDLSGVGILVLDEADRMLDMGFLHSIKRILGKLPRQN 180

Query: 179 QTL-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +   LFSAT  + +++++  F+  P+ + V + ++ AETI H          ++  L   
Sbjct: 181 RQTLLFSATFAEPIKQLALEFMCRPREVMVASHNTVAETITHRVHPVDVSRKRELLLYLL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              S++     +   +    +          G    AIHGN  Q  R++ L++FK G + 
Sbjct: 241 AQDSREQTLVFVRTKHGSDKLATFLEK---YGIKTAAIHGNKTQGQRLRALNSFKAGRVT 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LV +ED K +
Sbjct: 298 VLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             I +L+++ +D    D+    P +  I        +   P  Q      + ++ +    
Sbjct: 358 RQIVRLLDRDMDI--RDVPDFEPQV-PIRWGNSAPGKSKQPAGQHPPRKSQHRRAFGKAS 414

Query: 418 SHI 420
            H 
Sbjct: 415 VHT 417


>gi|330969509|gb|EGH69575.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 442

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 147/374 (39%), Positives = 216/374 (57%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV ++  +Y ++  LT     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG DVL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRRGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A ++            K+ A L   
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSV---KQWVVTVDKKRKADLFIH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +      ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 238 LMKKHRWGQVLVFAKTRVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVDWLN 372
           AIE L  + ++   
Sbjct: 358 AIEVLTRQTLERKE 371


>gi|330952956|gb|EGH53216.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae Cit 7]
          Length = 442

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 147/374 (39%), Positives = 216/374 (57%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV ++  +Y ++  LT     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG DVL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRRGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A ++            K+ A L   
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSV---KQWVVTVDKKRKADLFIH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +      ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 238 LMKKHRWGQVLVFAKTRVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVDWLN 372
           AIE L  + ++   
Sbjct: 358 AIEVLTRQTLERKE 371


>gi|330938172|gb|EGH41869.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 442

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 147/374 (39%), Positives = 216/374 (57%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV ++  +Y ++  LT     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG DVL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRRGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A ++            K+ A L   
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSV---KQWVVTVDKKRKADLFIH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +      ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 238 LMKKHRWGQVLVFAKTRVGVDQLVDRLQGLGMNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVDWLN 372
           AIE L  + ++   
Sbjct: 358 AIEVLTRQTLERKE 371


>gi|307191879|gb|EFN75298.1| Probable ATP-dependent RNA helicase DDX5 [Harpegnathos saltator]
          Length = 627

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 131/419 (31%), Positives = 214/419 (51%), Gaps = 8/419 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +    P V+  +   GY +PTPIQ +  P+ L   D+  IAQTG+GKT  ++LP +  
Sbjct: 127 FEEGNFPPYVMEGIRRQGYSQPTPIQAQGWPIALSGRDLVAIAQTGSGKTLGYILPAIVH 186

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +           P  LIL PTRELA Q+ +    +G++  +    + GG P   Q   L+
Sbjct: 187 IIHQPRLSNGDGPIALILAPTRELAQQIQEVANCFGESAAVRNTCIFGGAPKGPQAHDLD 246

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 247 RGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 306

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLL 239
           L++SAT   E++ ++E+FL +   + + + + +A       +    ++ K          
Sbjct: 307 LMWSATWPKEVRALAEDFLTDYTHLNIGSLTLSANHNITQIIDVCQEFEKDSKLFRLLQE 366

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+ V ++  ++ + G+   +IHG+ +Q+ R  +L  F+ G   ++
Sbjct: 367 IGNEKENKTIIFVETKRKVDDITRNIRRDGWQALSIHGDKNQQERDHVLQEFRSGRAPIL 426

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV +V NFD P+ +E+YIHRIGRTGR  + G A+      ++KH   
Sbjct: 427 VATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGRRRQTGTAYAFFTSHNMKHAGD 486

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           + +++ +    +N  LS +    +       N   +N      S+G    + N     S
Sbjct: 487 LIEVLREAGQNVNPRLSEMAEMAK-----AGNFGGRNGKRFGASSGIGGERGNIRRGSS 540


>gi|303257750|ref|ZP_07343762.1| putative ATP-dependent RNA helicase RhlE [Burkholderiales bacterium
           1_1_47]
 gi|331001188|ref|ZP_08324815.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
           YIT 11859]
 gi|302859720|gb|EFL82799.1| putative ATP-dependent RNA helicase RhlE [Burkholderiales bacterium
           1_1_47]
 gi|329569120|gb|EGG50912.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
           YIT 11859]
          Length = 458

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 169/446 (37%), Positives = 240/446 (53%), Gaps = 16/446 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F   GL+P ++ A+   GY KPT IQ K IP+VLQ  DV G AQTGTGKTASF LP+L 
Sbjct: 6   NFEQFGLAPNLLSAIKRMGYTKPTAIQCKAIPVVLQGRDVMGAAQTGTGKTASFGLPVLQ 65

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        IL PTRELA Q A+    Y  +  + + ++ GG+  + Q 
Sbjct: 66  KLLPLANTSTSPARHPVRVLILSPTRELADQTAEALSNYAADTPIRIGVVYGGVDIKPQA 125

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L +G ++LI TPGR+LDH  +    +N   I+++DEADRMLDMGF+P I  I + +P 
Sbjct: 126 EALRKGVEILIATPGRLLDHLEQRNTNLNQSGIVILDEADRMLDMGFLPDISRILNALPK 185

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTAETIEHCFVATYAQYSKKCA 233
            RQ L+FSAT + E++K++ NFL +P  I     N  ++T +             +    
Sbjct: 186 KRQNLMFSATFSPEIKKLAGNFLTDPVVIEVARQNATAATIKQEVFSVNELQKTDALVEL 245

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L  +           I+F N K     L   LEK GF+  AIHG+  Q  R+K+L +FK+
Sbjct: 246 LKTRGEDPDGKPLQTIVFVNAKLTARRLARELEKCGFNADAIHGDKTQEERLKLLKDFKD 305

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           GT+ +MVA+D+AARGLDI ++  V N+DVP   E+Y+HRIGRTGRAG  G A  LV  +D
Sbjct: 306 GTLNIMVATDVAARGLDIAELPLVINYDVPFVPEDYVHRIGRTGRAGSSGLALMLVTDKD 365

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK---NNPIPQKSTGFDRRK 410
            K  DAI KL   +V+ +  +L     P ++    +   +       P   +   F R  
Sbjct: 366 KKSFDAIRKL--TRVNLIPQELD--PEPRKRARFPRKFSSSTDAWKAPRKPEDPFFSRPY 421

Query: 411 -KNYSSQKSHIPLKESEKISKLQQDI 435
               SS K   P   S  +S  ++++
Sbjct: 422 VPGRSSGKKPAPQNFSRSVSGEKREV 447


>gi|242237660|ref|YP_002985841.1| ATP-dependent RNA helicase RhlB [Dickeya dadantii Ech703]
 gi|242129717|gb|ACS84019.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
          Length = 428

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 135/419 (32%), Positives = 208/419 (49%), Gaps = 10/419 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P V+ A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPLVIEALESKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFH 69

Query: 62  ILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L         +V  PR LI+ PTRELA Q+  + E   +     + L  GG  ++ Q K
Sbjct: 70  HLLSHPALADRQVNQPRALIMAPTRELAVQIHTDAEALARVTGFKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLENGVDILIGTTGRLIDYTKQNHVNLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     I+F N K     +   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRCIVFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTHGNLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGYSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            AIE  I   +     +    L+ L  P +++   +     +    P++S      +K 
Sbjct: 369 PAIETYIGHNIPVSKYNSDVLLNDLPEP-KRLSRPRSTGGPRRPGAPRRSGAPRNNRKR 426


>gi|229085402|ref|ZP_04217643.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-44]
 gi|228697878|gb|EEL50622.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-44]
          Length = 433

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 141/419 (33%), Positives = 232/419 (55%), Gaps = 12/419 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ + IP+V+   D+ G A+TGTGKT +FVLP+L 
Sbjct: 3   NFLELGISETFNHTLRENGIAEATPIQEQAIPVVMAGKDIIGQAKTGTGKTLAFVLPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    EK   +      L I G      Q +KL+
Sbjct: 63  KIDPESSDVQA---LIVAPTRELALQITTEIEKMLVHKEDINVLAIYGGQDVAQQMRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  ++++N+ +LV+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETPESKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ +++ P+ I + +   T   I            +      + + 
Sbjct: 180 MLFSATMPKDIKKLAKRYMKEPEMIRIQSEEVTVNNI---KQRVIETTDRAKQDALRHVM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K+    L   L+  G++   +HG++ Q  R +++ +F+E  IQ ++
Sbjct: 237 DRDQPFLAVIFCRTKRRASKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFREAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D  H+  I
Sbjct: 297 ATDVAARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAPKDEMHLKEI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           EK I   +         L  P  +++     + +++   P+K+  + +R     SQ   
Sbjct: 357 EKGIGTTLQR-----QELELPAHQVNAKNEQNKKEHTKKPKKTGQYRQRDNREGSQNGK 410


>gi|195455578|ref|XP_002074783.1| GK23245 [Drosophila willistoni]
 gi|194170868|gb|EDW85769.1| GK23245 [Drosophila willistoni]
          Length = 506

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 117/442 (26%), Positives = 196/442 (44%), Gaps = 12/442 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL P +   +   G    TPIQ   IP +L   D  G A+TG+GKT +F LP+L 
Sbjct: 8   SFQALGLRPWLAKQLTKVGLKDATPIQKSCIPAILSGQDCIGAAKTGSGKTFAFALPILE 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +          L+L PT ELA Q+++ F   G+   + V ++ GG     +++KL +
Sbjct: 68  KLSE---EPVSHFALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++  PGR+ DH         +    ++ +    +  G       I        +  
Sbjct: 125 RPHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDASLAIIEKSLPKARQN 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSST---AETIEHCFVATYAQYSKKCALLQQL 238
           LF +    +  K S  F    +  E +  S         +   +              + 
Sbjct: 185 LFFSATMKDFIKDSSIFPIANECFEWSEESQVATVDTLDQRYLLCADYDRDMVLIEALRK 244

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            + ++   N +IF N KK    L  +L+        +HG + Q+ R+  +S FK   I+ 
Sbjct: 245 YRDENPNSNVMIFTNTKKYCQLLSMTLQNLDIENVCLHGFMRQKERVAAISRFKSNHIRT 304

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHI 357
           ++A+D+AARGLDIP V  V N  +P   + YIHR+GRT RAGR G + ++     D++ +
Sbjct: 305 LIATDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRSGMSISIFRFPRDLELL 364

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            +IE  I  K+     D       +E+I   Q N  R+ + +   +  FD R +NY  + 
Sbjct: 365 GSIEDEINTKLQEHPID----QRMVERI-FMQVNVTRRESEMKLDNNDFDERAQNYRRKT 419

Query: 418 SHIPLKESEKISKLQQDIQEND 439
             I  K+ +++  L +  Q++ 
Sbjct: 420 WIIEGKDPDQMEALYRKKQKDK 441


>gi|56090441|ref|NP_001007614.1| probable ATP-dependent RNA helicase DDX5 [Rattus norvegicus]
 gi|50927691|gb|AAH79036.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Rattus norvegicus]
 gi|149054596|gb|EDM06413.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
 gi|149054597|gb|EDM06414.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
 gi|149054598|gb|EDM06415.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
          Length = 615

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 135/441 (30%), Positives = 221/441 (50%), Gaps = 6/441 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 154 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 213

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 214 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N  L  L                  R++     K  GF+  +   +
Sbjct: 454 SDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 513

Query: 415 SQKSHIPLKESEKISKLQQDI 435
             + +  L + +  +K Q  +
Sbjct: 514 YDRGYSSLLKRDFGAKTQNGV 534


>gi|66047524|ref|YP_237365.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
 gi|63258231|gb|AAY39327.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
          Length = 442

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 147/374 (39%), Positives = 216/374 (57%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV ++  +Y ++  LT     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG DVL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRRGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A ++            K+ A L   
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSV---KQWVVTVDKKRKADLFIH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +      ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 238 LMKKHRWGQVLVFAKTRVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVDWLN 372
           AIE L  + ++   
Sbjct: 358 AIEVLTRQTLERKE 371


>gi|37522077|ref|NP_925454.1| hypothetical protein gll2508 [Gloeobacter violaceus PCC 7421]
 gi|35213076|dbj|BAC90449.1| gll2508 [Gloeobacter violaceus PCC 7421]
          Length = 437

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 139/366 (37%), Positives = 207/366 (56%), Gaps = 6/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGLS  VV A+ + G+ +PTPIQ+K+IP +L   D+   AQTGTGKTA+F LP++  
Sbjct: 5   FSALGLSESVVKALDELGFEQPTPIQLKSIPFLLDGRDLLAQAQTGTGKTAAFGLPLVDR 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +   ARV+    L+L PTRELA QV +    Y K+  + V  + GG P + Q ++L  G
Sbjct: 65  SDPQDARVQ---ALVLAPTRELAVQVCEAIHTYSKHSGVRVLPIYGGQPIDRQMRRLRAG 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A +++ TPGR+LD   RG L ++ +  LV+DEAD+MLDMGFI  +Q I    P  RQ + 
Sbjct: 122 AQIVVGTPGRVLDLMRRGSLDLSALRTLVLDEADQMLDMGFIEEVQTILDAAPPERQLVF 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   ++K++   L+ P  + +         I            K  A     + + 
Sbjct: 182 FSATLPASIRKLAARHLRTPMTLTMPAEERDTPAIAQRVYFVNF---KNRAQALTRVLAA 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + +IF   K+    L   L+  G    A+HG+++Q +R  +L  F+   + ++VA+
Sbjct: 239 EDPASALIFTRTKQAADELAEQLQDDGHRAEALHGDLNQSAREAVLGRFRRQQLNVVVAT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI D+ HV N+D+P   E+YIHRIGRTGRAGR G A +     D   +  IE+
Sbjct: 299 DVAARGLDIADLSHVINYDMPQDGESYIHRIGRTGRAGRTGVAISFALPTDRYRLRLIER 358

Query: 363 LIEKKV 368
                +
Sbjct: 359 ATGSTL 364


>gi|18424420|ref|NP_568931.1| DEAD/DEAH box helicase, putative (RH10) [Arabidopsis thaliana]
 gi|108861883|sp|Q8GY84|RH10_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 10
 gi|10177322|dbj|BAB10648.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|332010025|gb|AED97408.1| DEAD-box ATP-dependent RNA helicase 10 [Arabidopsis thaliana]
          Length = 456

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 143/428 (33%), Positives = 223/428 (52%), Gaps = 18/428 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+  ++V A    G+  P+ IQ + +P  L+  DV G+AQTG+GKT +F +P+L 
Sbjct: 10  TFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQ 69

Query: 62  ---------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                      +KGR         +L PTRELA Q+A+ FE  G + +L  A+L+GGI  
Sbjct: 70  ALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDR 129

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNIT 171
             Q   L +   V++ TPGR+ DH +  K     +++ LV+DEADR+L+  F   +  I 
Sbjct: 130 MQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQIL 189

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
             +P  R+T LFSATMT +++K+    L+NP +IE  +  ST +T+           +K 
Sbjct: 190 EEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTL---KQQYRFVAAKY 246

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                  + S+      +IF         L   L   GF    I G + Q  R+  L+ F
Sbjct: 247 KDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKF 306

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   ++V +D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR G   +LV +
Sbjct: 307 KAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            +++    IEKLI KK+     +   +   LE++       A+K + +  K +G  +R+ 
Sbjct: 367 YELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERV-----AEAKKLSAMNMKESGGRKRRG 421

Query: 412 NYSSQKSH 419
               +   
Sbjct: 422 EDDEESER 429


>gi|254487619|ref|ZP_05100824.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
 gi|214044488|gb|EEB85126.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
          Length = 437

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 147/374 (39%), Positives = 226/374 (60%), Gaps = 5/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  +GL  ++V A+ + G   PTPIQ + IP  +   DV G+AQTGTGKTA+F +P++ 
Sbjct: 3   DFEMMGLPRRLVKALTNMGMTDPTPIQKQAIPHAMNGRDVMGLAQTGTGKTAAFGVPLVA 62

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   + R   R  R L+L PTRELA Q+ +N + + +   L   +++GG     Q K+L
Sbjct: 63  QMLEMEARPEPRTVRGLVLAPTRELANQIMENLKGFCEGTQLKAMMVVGGQSINPQIKRL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+L+ TPGR+LD  +R  +L++    LV+DEAD+MLDMGFI  ++ I S++P  RQ
Sbjct: 123 ERGVDLLVATPGRLLDLMDRRAVLLHKTTFLVLDEADQMLDMGFIHDLRKIASVLPKERQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + +++ ++L +P RIEV+ P   A+ +            K   +     
Sbjct: 183 TMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKVTQEVHFIAKAEKKALLIELL-- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++ T +  ++F   K     L   L K GF   +IHGN  Q  R + + +FK+G I ++
Sbjct: 241 -AKHTEERALVFGRTKHGCEKLMKDLVKSGFKAASIHGNKSQGQRDRAIESFKKGDITVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIPDV HV+N+++PN  +NY+HRIGRT RAG+ G A    A +++  +  
Sbjct: 300 VATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGELKD 359

Query: 360 IEKLIEKKVDWLNG 373
           I+K ++  +   +G
Sbjct: 360 IQKTMKIAIPVASG 373


>gi|50914526|ref|YP_060498.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
 gi|50903600|gb|AAT87315.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
          Length = 539

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 141/371 (38%), Positives = 222/371 (59%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFIEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +        + + L++ PTRELA Q  +   ++G+   + V  + GG   E Q K L+
Sbjct: 61  NKIRTNE---NIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L+++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ +++     T   ++  +V    Q             
Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 361 EKLIEKKVDWL 371
           E L +K++  L
Sbjct: 355 ENLTKKQMKPL 365


>gi|21244335|ref|NP_643917.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109989|gb|AAM38453.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 460

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 163/448 (36%), Positives = 241/448 (53%), Gaps = 14/448 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PTPIQ + IPLVL  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      V  PR     IL PTRELA QV D+   Y K   +  A++ GG+    Q  
Sbjct: 61  QHLGTAPQTVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+LI  PGR++DH  R  + ++ IE+L++DEADRMLDMGF+P I+ I + +P  
Sbjct: 121 ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180

Query: 178 RQTL-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +   LFSAT  + +++++  F++NP +I+V   ++ AE+I H          +   L  
Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPVQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               S+   +  ++F   K     L   LEK G    AIHGN  Q  RM+ LS+FK G +
Sbjct: 241 LAQDSR---EQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LVA+++ K 
Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  I +++ + V+    D+    P    I        R   P   ++     RK +    
Sbjct: 358 LRQIVRMLGRDVEI--RDVPGYEPQT-PIRWGNSAPGRAEQPGGDRAP----RKSHARRP 410

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
               P +        +   Q ++     
Sbjct: 411 HGDAPRQAHAHAGPKKPGGQRSNGPRQA 438


>gi|299768643|ref|YP_003730669.1| putative ATP-dependent RNA helicase [Acinetobacter sp. DR1]
 gi|298698731|gb|ADI89296.1| putative ATP-dependent RNA helicase [Acinetobacter sp. DR1]
          Length = 644

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 144/463 (31%), Positives = 233/463 (50%), Gaps = 19/463 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+  L   +  A+   G+  PTP+Q + IP  L+  D+   +QTG+GKTA+F+LP L 
Sbjct: 4   TFAEFSLHETLQQALEGLGFTAPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLN 63

Query: 62  ---------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                      +     V  P  L++ PTRELA QV+ +   + ++        I G   
Sbjct: 64  ALAGQETVVPFKDRMKAVTQPNILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
            A+  +  +GA V++ TPGR+LD  NR ++ ++ ++ L++DEADRMLD+GF   ++ I+ 
Sbjct: 124 FAKQIQQLKGAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEADRMLDLGFSEDLEAISE 183

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L    +QTL+FSAT  D + +++   +++P RI + T  ST   I      T     K  
Sbjct: 184 LAANRKQTLMFSATFADRIIRLASCMMKDPMRIAIETGHSTNTDITQTLHWTDGFEHK-- 241

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L     S + +   ++F + +++   L   L + G SV A+HG + Q  R + L + +
Sbjct: 242 KKLLTHWLSDENLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIR 301

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL    
Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYR 361

Query: 353 DIKHIDAIEKLIEKK--VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           +   I A+E+ +E +  V  + G   S  P     D               +  G     
Sbjct: 362 ERGKIRALEEYLEARLSVSEIEGLEPSPPPARSGRDGGGRGRGGNGGSRDGRRGGGGFGG 421

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFM 453
                 +S+   +E  +  + ++   +        RG  PAF 
Sbjct: 422 GRRFEGESNFKRREGGRDDRPRRSFDDKP------RGERPAFG 458


>gi|289434525|ref|YP_003464397.1| DbpA-type ATP-dependent RNA helicase [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170769|emb|CBH27309.1| DbpA-type ATP-dependent RNA helicase [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 474

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 135/477 (28%), Positives = 223/477 (46%), Gaps = 30/477 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+  +L LS ++  A+ + GY   TP+Q + IP+ L   D+   +QTG+GKTA+F +P+ 
Sbjct: 5   MN--NLKLSEEIKRAINELGYKDATPVQKEVIPVALTGKDIVAKSQTGSGKTAAFAIPIA 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +   P+ LI+ PTREL  QV       G+   +  A + G  PF  Q  +L 
Sbjct: 63  EQVIWEENK---PQALIIVPTRELGVQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELS 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+LDH  +G L ++ +  LV+DE D ML MGFI  +++I   +P  RQ 
Sbjct: 120 QKNHIVVGTPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLSMGFIDQVEDILQFLPKKRQN 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM D             KR + +         +   +      ++      Q + 
Sbjct: 180 LFFSATMPD-------EMQDLIKRYQEDPVVIEMAAEKTNPITHIEMQTENKEKTLQDVL 232

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +   + IIFCN K  V  L         +   IHG + Q  R + + +FK G  + ++
Sbjct: 233 ITENPDSAIIFCNTKNQVDELSDL---LQVNAAKIHGGLRQEERFRAMDDFKSGKSRFLI 289

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A RG+D+ +V  V N+D+P   ENY+HRIGRTGRAG  GKA + V   +   +  I
Sbjct: 290 ATDVAGRGIDVENVTLVINYDLPVEKENYVHRIGRTGRAGNSGKAISFVKTNENPLLRDI 349

Query: 361 EKLIEKKVD--------WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK---STGFDRR 409
           E ++   ++         +     +     +K  I +     K N    K   + G  ++
Sbjct: 350 EDMLNITIEKKRKPTIIEVKASEEAFRKKQQKRPIIKKARGEKLNKNIMKLYFNGGKKKK 409

Query: 410 KK--NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            +  ++    S +    SE I  +   I+++ +      G  PA +      K+  +
Sbjct: 410 IRAVDFVGTISKLEGITSEDIGII--TIEDHVSFVEILNGKGPAVLEMMRSRKVKGR 464


>gi|224094640|ref|XP_002195464.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Taeniopygia
           guttata]
          Length = 451

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 132/413 (31%), Positives = 211/413 (51%), Gaps = 13/413 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++  +  A    G+  PT IQI+ IP+ LQ  DV G+A+TG+GKT +F LP+L 
Sbjct: 25  SFKDLGVTDVLCKACDQLGWKVPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFALPILQ 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG--KNYNLTVALLIGGIPFEAQNKKL 119
            L +   R+     L+L PTRELA Q+++ FE  G       +  ++ G           
Sbjct: 85  ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQTSAVIVGGIDTMSQSLALA 141

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   ++      +    N     +  ++ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 142 KKPHVIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRK 201

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT ++QK+    L+NP +  V++   T E ++          SK        +
Sbjct: 202 TFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ---YYIFIPSKFKDSYLVYI 258

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     ++
Sbjct: 259 LNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSIL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GK+ T V + D++    
Sbjct: 319 LATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQR 378

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           IE LI KK+         +    E++  AQ     +   +  +  G  +R +N
Sbjct: 379 IEHLIGKKLPAFPMQEEEVMMLTERVAEAQ-----RLARMELREQGEKKRSRN 426


>gi|52082502|ref|YP_081293.1| ATP-dependent RNA helicase [Bacillus licheniformis ATCC 14580]
 gi|52787898|ref|YP_093727.1| DeaD [Bacillus licheniformis ATCC 14580]
 gi|52005713|gb|AAU25655.1| ATP-dependent RNA helicase [Bacillus licheniformis ATCC 14580]
 gi|52350400|gb|AAU43034.1| DeaD [Bacillus licheniformis ATCC 14580]
          Length = 481

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 137/407 (33%), Positives = 219/407 (53%), Gaps = 12/407 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  LS  +  A+   GY +PT +Q + IP VL++ DV   ++TG+GKTA+F +P+  
Sbjct: 5   SFRDYALSGDITKALDHLGYKEPTAVQSEVIPAVLKKRDVVVKSRTGSGKTAAFGIPLCE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           + E    +   P+ L+L PTRELAAQV ++    G+   +  A + G   FE Q  +L++
Sbjct: 65  LTEWEENK---PQALVLTPTRELAAQVKEDLTNIGRYKRIKAAAVYGKSSFERQKTELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++  PGR+LDH  +G L +  ++ LVIDEAD ML+MGFI  +  I   +P  R T+
Sbjct: 122 KCHIVVGPPGRVLDHIEKGTLPLEKLKYLVIDEADEMLNMGFIDQVGAIIRHLPEERLTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  ++++ +S  ++++P +IE+    +T   IEH               L   L  
Sbjct: 182 LFSATFPEDVEHLSLQYMKDPLKIEIKAGGTTTADIEH---QLIIVNENDPFSLLVDLFI 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + I+FC  ++ V  L   L   G+    IHG + Q  R  +++ F+ G  + ++A
Sbjct: 239 VENPDSCIVFCRTQEQVNELQWRLSVLGYPCEKIHGGMPQEDRFAVMNRFRRGAFRYLIA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV N+++P   E+Y+HR GRTGRAG  GKA TL +  + + I  IE
Sbjct: 299 TDVAARGIDIENITHVINYELPLDQESYVHRTGRTGRAGSRGKAITLASAREKRMIADIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
             I   +  +        P  E+I  A+    +K N  P+       
Sbjct: 359 DYIGFHIPIIE------EPSKEEIARAKAAFQKKINRKPELKQDKSE 399


>gi|119468751|ref|ZP_01611803.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family [Alteromonadales bacterium TW-7]
 gi|119447807|gb|EAW29073.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family [Alteromonadales bacterium TW-7]
          Length = 433

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 154/434 (35%), Positives = 238/434 (54%), Gaps = 9/434 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M+F     +P+++ A+ +  Y   TPIQ   IP V +  DV   AQTGTGKTA+F LP +
Sbjct: 1   MNFKSFSFAPEIIQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPVI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++E   +    P  L+L PTRELA Q+A+N ++Y K+ +L V  L GG+    Q   L
Sbjct: 61  QKLIESDLSTTNAPTALVLAPTRELAEQIANNCKEYAKHTSLKVVSLFGGVNTAGQENAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D+++ TPGR+LDH   G L + N++ LV+DEADRMLDMGFI  +Q +       RQ
Sbjct: 121 KAGVDIVVATPGRLLDHIRLGNLSLANVKHLVLDEADRMLDMGFITDMQTVIKSCADDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT    +++ +   L+ P+ + V+    T  T        Y    ++   L   L
Sbjct: 181 ILLFSATFPAAIKQFASKVLKQPEIVRVD---QTNSTASTVQHVVYPVEERRKQELLSEL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F N K     L   L   G      HG+  Q +R + L  FKEG ++++
Sbjct: 238 IGKKNWQQVLVFVNMKDTADELVKELNLDGIPATVCHGDKSQGNRRRALREFKEGKVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+++AARG+DI  +  V N D+P  AE+Y+HRIGRTGRAG  G+A + V++E+   +  
Sbjct: 298 VATEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGNQGQAISFVSREEENTLFE 357

Query: 360 IEKLIEKKVD--WLNG-DLSSLNPPLEKI-DIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           IE LI +K+   +L G ++S+    ++KI     H    ++N +  ++TG + R  N S 
Sbjct: 358 IEALIGQKIKRVYLEGYEVSNREVLIDKIGKKPAHLRRTRSNKLSGQATG-EARAVNRSR 416

Query: 416 QKSHIPLKESEKIS 429
             +     +  K+S
Sbjct: 417 ISNVRKSLKGAKLS 430


>gi|262192111|ref|ZP_06050273.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae CT 5369-93]
 gi|262032022|gb|EEY50598.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae CT 5369-93]
          Length = 464

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 168/392 (42%), Positives = 243/392 (61%), Gaps = 10/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C         KK   +   L
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADV---KKKPDMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 238 VKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDI 387
           IE+L +  +  +N  L+   P    P  K+D 
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNLLPESKLDT 387


>gi|261212630|ref|ZP_05926914.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC341]
 gi|260837695|gb|EEX64372.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC341]
 gi|327485418|gb|AEA79824.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae LMA3894-4]
          Length = 464

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 168/392 (42%), Positives = 243/392 (61%), Gaps = 10/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C         KK   +   L
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADV---KKKPDMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 238 VKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDI 387
           IE+L +  +  +N  L+   P    P  K+D 
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNQLPESKLDT 387


>gi|229514699|ref|ZP_04404160.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TMA 21]
 gi|229348679|gb|EEO13637.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TMA 21]
          Length = 464

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 168/392 (42%), Positives = 243/392 (61%), Gaps = 10/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C         KK   +   L
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADV---KKKPDMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 238 VKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDI 387
           IE+L +  +  +N  L+   P    P  K+D 
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNLLPESKLDT 387


>gi|229526174|ref|ZP_04415578.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae bv. albensis
           VL426]
 gi|229336332|gb|EEO01350.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae bv. albensis
           VL426]
          Length = 464

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 168/392 (42%), Positives = 243/392 (61%), Gaps = 10/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C         KK   +   L
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADV---KKKPDMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 238 VKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDI 387
           IE+L +  +  +N  L+   P    P  K+D 
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNLLPESKLDT 387


>gi|229527823|ref|ZP_04417214.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 12129(1)]
 gi|229334185|gb|EEN99670.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 12129(1)]
          Length = 464

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 168/392 (42%), Positives = 243/392 (61%), Gaps = 10/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C         KK   +   L
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADV---KKKPDMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 238 VKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDI 387
           IE+L +  +  +N  L+   P    P  K+D 
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNQLPESKLDT 387


>gi|197692465|dbj|BAG70196.1| ATP-dependent RNA helicase DDX5 [Homo sapiens]
          Length = 614

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 135/441 (30%), Positives = 221/441 (50%), Gaps = 6/441 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 154 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 213

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 214 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N  L  L                  R++     K  GF+  +   +
Sbjct: 454 SDLISVLREASQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 513

Query: 415 SQKSHIPLKESEKISKLQQDI 435
             + +  L + +  +K Q  +
Sbjct: 514 YDRGYSSLLKRDFGAKTQNGV 534


>gi|153825002|ref|ZP_01977669.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
 gi|149741327|gb|EDM55361.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
          Length = 464

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 168/392 (42%), Positives = 243/392 (61%), Gaps = 10/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C         KK   +   L
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADV---KKKPDMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 238 VKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDI 387
           IE+L +  +  +N  L+   P    P  K+D 
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNLLPESKLDT 387


>gi|153829646|ref|ZP_01982313.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 623-39]
 gi|148874874|gb|EDL73009.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 623-39]
          Length = 464

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 168/392 (42%), Positives = 243/392 (61%), Gaps = 10/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C         KK   +   L
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADV---KKKPDMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 238 VKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDI 387
           IE+L +  +  +N  L+   P    P  K+D 
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNLLPESKLDT 387


>gi|153801601|ref|ZP_01956187.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
 gi|124122857|gb|EAY41600.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
          Length = 464

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 168/392 (42%), Positives = 243/392 (61%), Gaps = 10/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C         KK   +   L
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADV---KKKPDMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 238 VKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDI 387
           IE+L +  +  +N  L+   P    P  K+D 
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNLLPESKLDT 387


>gi|162458395|ref|NP_001105396.1| translational initiation factor eIF-4A [Zea mays]
 gi|2341061|gb|AAB67607.1| translational initiation factor eIF-4A [Zea mays]
          Length = 414

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 196/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 42  SFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G       + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 102 QLDYGLVE---CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS 158

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 159 GVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVG 218

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 219 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDL--YE 276

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 277 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V +++ + +  I+
Sbjct: 337 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDNERMLFDIQ 396

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     ++ L  +++ L
Sbjct: 397 KFYNVLIEELPANVADL 413


>gi|254225215|ref|ZP_04918828.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
 gi|125622314|gb|EAZ50635.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
          Length = 464

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 168/392 (42%), Positives = 243/392 (61%), Gaps = 10/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C         KK   +   L
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADV---KKKPDMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 238 VKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDI 387
           IE+L +  +  +N  L+   P    P  K+D 
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNQLPESKLDT 387


>gi|330447222|ref|ZP_08310872.1| ATP-dependent RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491413|dbj|GAA05369.1| ATP-dependent RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 436

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 136/403 (33%), Positives = 210/403 (52%), Gaps = 10/403 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGL+P V+  + D G+   TPIQ   +P++L  HD+ G AQTGTGKT +F+     
Sbjct: 10  KFAELGLNPLVLKGLEDKGFHNCTPIQALALPVMLSGHDIAGQAQTGTGKTIAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +   PR +I+ PTRELA Q+ ++      +  L   L  GG P+E Q  
Sbjct: 70  HLLETAAPAHRKTNQPRAIIMAPTRELAIQIYNDASSLIASTGLKAGLAYGGEPYEKQKA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G D+LI T GRI+D + +  + +N+I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 ILDEGVDILIGTCGRIIDFYKQRVIELNSIQVVVLDEADRMFDLGFIKDIRFLFRRMPAP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T   +     F        V       +T        +   +++   L Q
Sbjct: 190 TERLSLLFSATLSYRVKELAFEHMNSPESVIVEPEQ-KTGHRIQEELFYPSNQEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++  +  IIF N K    ++   L   G  V  + G++ Q+ R +IL  F +G I 
Sbjct: 249 TLIEEEWPERAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVPQKKRERILDQFTKGDID 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+ AE+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDAEDYVHRIGRTGRAGASGHSISFACEEYAINL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKN 396
            AIE  IE  +     D    L  L  P+ ++       +R+N
Sbjct: 369 PAIETYIEHGIPQSKYDSDALLEDLPAPI-RLQRNPRQGSRRN 410


>gi|118482639|gb|ABK93239.1| unknown [Populus trichocarpa]
          Length = 413

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 193/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  TFDAMNLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     +   + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 101 QLDY---DIVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSA 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+++  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  I+
Sbjct: 336 TDLLARGINVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLSDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     V+ L  +++ L
Sbjct: 396 RFYNVTVEELPSNVADL 412


>gi|308497817|ref|XP_003111095.1| hypothetical protein CRE_03900 [Caenorhabditis remanei]
 gi|308240643|gb|EFO84595.1| hypothetical protein CRE_03900 [Caenorhabditis remanei]
          Length = 749

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 154/470 (32%), Positives = 240/470 (51%), Gaps = 26/470 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  + LS +++ A   AGY  PTPIQ   IP+ L   D+C  A TGTGKTA+FVLP+L
Sbjct: 155 VSFEQMNLSRQILKACAGAGYTDPTPIQQACIPVALSGKDICACAATGTGKTAAFVLPIL 214

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          R L+L PTRELA QV   F K      L V L  GG+  +AQ   L 
Sbjct: 215 ERMIYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALR 274

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            G DV++ TPGR++DH  N     + +IE+LV+DEADRML+  F   +  +  L    RQ
Sbjct: 275 SGPDVVVATPGRLIDHLHNSPNFNLGSIEVLVLDEADRMLEEAFRDQMNELIRLCAENRQ 334

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATMT+E+ +++   LQ P +I +N  + TA  +   F+   A        +   L
Sbjct: 335 TLLFSATMTEEIDELASMSLQRPVKIFINENTDTALKLRQEFIRIRAGRETDRESMVAAL 394

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    N I+F   KK+   +   L   G  V  +  ++ Q  R++ LS FK+G I ++
Sbjct: 395 VTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKGEIDVL 454

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++DLA+RGLDI  V  V N ++P   + YIHR+GRT RAG+ G++ +LV +E+ K +  
Sbjct: 455 VSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEEERKLLKE 514

Query: 360 I----------EKL--------IEKKVDWLNGDLSSLNPP---LEKIDIAQHNHARKNNP 398
           I          ++L           ++D L   +  ++      +++ IA+ + A+  + 
Sbjct: 515 IVNSNADRTLKQRLVAPEVVEAYRSRIDDLEETIQQIDEEDRAEKELRIAESSMAKTQHA 574

Query: 399 IPQKSTGFDRR----KKNYSSQKSHIPLKESEKISKLQQDIQENDADSLG 444
           +     G +RR    K++   ++     K   KI    +      ++ + 
Sbjct: 575 LETGEAGNERRVWLMKESQVEKQRKREEKRQMKIDARNKAHASKSSEEIA 624


>gi|114682553|ref|XP_514711.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 isoform 6 [Pan
           troglodytes]
          Length = 827

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 145/496 (29%), Positives = 233/496 (46%), Gaps = 54/496 (10%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L
Sbjct: 218 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 277

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTREL  QV     +  +  N+T  L +GG+  ++Q   L 
Sbjct: 278 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG------------------ 162
              D+LI TPGR++DH +       +   ++I +      +G                  
Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADSPPVGTACPHAPTLWLLHLPFPQ 397

Query: 163 --------------FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN 208
                         F   ++ I  +    RQT+LFSATMTDE++ ++   L+NP RI VN
Sbjct: 398 PGAISCPFRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVN 457

Query: 209 TPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
           + +  A  +   F+            +   L ++    + ++F   KK    +   L   
Sbjct: 458 SNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLM 517

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G  V  +HGN+ Q  R++ L  FK+  I ++VA+D+AARGLDI  V  V NF +PN  ++
Sbjct: 518 GLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKH 577

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK-----------------KVDWL 371
           Y+HR+GRT RAGR G++ +LV +++ K +  I K  +                  K++ +
Sbjct: 578 YVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKM 637

Query: 372 NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKL 431
             D+ ++     +    Q + A+ N        G +   +    ++S    KE  K  K+
Sbjct: 638 EKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQE--PERSWFQTKEERKKEKI 695

Query: 432 QQDIQENDADSLGFRG 447
            + +QE D   L  RG
Sbjct: 696 AKALQEFD---LALRG 708


>gi|328772988|gb|EGF83025.1| hypothetical protein BATDEDRAFT_29115 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 483

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 132/380 (34%), Positives = 199/380 (52%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+      V+  V   G+  PT IQ +  P+ L   DV G+A+TG+GKT ++ LP + 
Sbjct: 56  TFAEASFPSYVLKEVESLGFSAPTSIQSQGWPMALSGRDVVGVAETGSGKTLAYTLPSIV 115

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  LIL PTRELA Q+     K+G +  +    L GG+P   Q + L
Sbjct: 116 HINAQPLLKPGDGPIVLILAPTRELAIQIQVECNKFGSSSRIKNTCLYGGVPKGPQMRDL 175

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG ++ I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 176 ERGIEICIATPGRLIDMLESGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 235

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCALLQQL 238
           TL++SAT   E+Q ++ ++ +   ++ V +   +A       V     + K         
Sbjct: 236 TLMWSATWPKEVQALARDYQKEFIQVNVGSMELSASHNITQIVEICPSHDKRHRLYKLLE 295

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               +  +  IIF   K+   ++   L   GF   AIHG+  Q+ R  ++  FK G   +
Sbjct: 296 DIMSNADQKTIIFTGTKRTADDITRDLRHDGFPALAIHGDKKQQERDWVMQEFKSGKTPI 355

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLD+ DV  V NFD PN  E+Y+HRIGRTGRA   G A+TL + ++ K   
Sbjct: 356 LIATDVAARGLDVKDVKFVINFDFPNNIEDYVHRIGRTGRANNKGTAYTLFSPDNFKSAR 415

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + K++E+    ++  L   
Sbjct: 416 DLVKILEEAGQVVDPQLHDF 435


>gi|167622797|ref|YP_001673091.1| ATP-dependent RNA helicase SrmB [Shewanella halifaxensis HAW-EB4]
 gi|167352819|gb|ABZ75432.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 411

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 132/371 (35%), Positives = 213/371 (57%), Gaps = 2/371 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L P+++ ++   G+ KPT IQ +TIP+ +++ D+   A TGTGKTASF+LP L
Sbjct: 4   MQFEDLQLDPRLLESLKAMGHNKPTTIQQQTIPVAMEQRDILARAPTGTGKTASFLLPAL 63

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L     R     R LIL PTRELA+Q+            L   ++ GG+P+  Q + L
Sbjct: 64  QHLLDFPRRYGGRARVLILTPTRELASQIHRYASHLATGLGLDTVIITGGVPYGPQEEAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++  D+L+ TPGR++++ ++G      +E+L+IDEADRMLDMGF   ++ I       +Q
Sbjct: 124 QKNVDILVATPGRLMEYLDKGHFNAEEVEVLIIDEADRMLDMGFSAVVETIAIESVGRKQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT+ +       +       +++   +  +E  +       A        L   L
Sbjct: 184 TMLFSATL-EGSDVGRFSHELLTNPVKLEAEAPRSEKAKIHQWIHLADDKAHKFALLCAL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+ ++  I+F   ++ V +L   L+K+G +   + G+++Q++R + L  F +G + ++
Sbjct: 243 LKQEEVQRTIVFVKTREAVASLEGLLQKEGITCAFMRGDMEQKARFQALGRFTKGEVNIL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI D+ HV NFD+P  A+ Y+HRIGRTGRAG  G A +LV   DI+ +  
Sbjct: 303 LATDVAARGIDIDDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDIRVVGK 362

Query: 360 IEKLIEKKVDW 370
           IE+ IE+ +  
Sbjct: 363 IERYIEQPLKR 373


>gi|330846058|ref|XP_003294872.1| hypothetical protein DICPUDRAFT_93301 [Dictyostelium purpureum]
 gi|325074579|gb|EGC28605.1| hypothetical protein DICPUDRAFT_93301 [Dictyostelium purpureum]
          Length = 413

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 119/376 (31%), Positives = 190/376 (50%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DL L   ++  + + GYV+P+PIQ K IP+ L   D+   A+ GTGKTASF++P L 
Sbjct: 40  EFDDLHLKRDLLRGIFEKGYVRPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIPALE 99

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             +       + + LIL PTRELA Q +   ++ GK  N+ V    GG   +    +L  
Sbjct: 100 KTDPT---KDVIQVLILVPTRELALQTSQVCKELGKYMNVQVMASTGGTSLKDDIMRLYS 156

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD   +    ++N + +++DEAD++L   F P ++ + + +P  RQ L
Sbjct: 157 PVHILVATPGRVLDLAQKNVANLSNCQTMIMDEADKLLSQEFQPLVEQLINFLPPQRQIL 216

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F +   +           T++           ++       L S
Sbjct: 217 LFSATFPVTVKS----FKEQYLQQAFEINLMEELTLKGVTQYYAFVEERQKIHCLNTLFS 272

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 273 KLQINQSIIFCNSVNRVELLAKKITELGYSCFFIHAKMVQAHRNRVFHDFRNGACRNLVS 332

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI DV  V NFD P  +E Y+HRIGR+GR G  G A  L+  ED   +  IE
Sbjct: 333 SDLFTRGIDIQDVNVVINFDFPKHSETYLHRIGRSGRFGHLGLAINLITYEDRFSLYKIE 392

Query: 362 KLIEKKVDWLNGDLSS 377
           + +  ++  +   +  
Sbjct: 393 QELGTEIKPIPPVIDK 408


>gi|149635102|ref|XP_001510775.1| PREDICTED: similar to DDX5 protein [Ornithorhynchus anatinus]
          Length = 682

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 135/441 (30%), Positives = 221/441 (50%), Gaps = 6/441 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 162 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 221

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 222 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRD 281

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 282 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 341

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 342 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 401

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 402 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 461

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 462 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 521

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N  L  L                  R++     K  GF+  +   +
Sbjct: 522 SDLISVLREANQAINPKLLQLIEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 581

Query: 415 SQKSHIPLKESEKISKLQQDI 435
             + +  L + +  +K Q  +
Sbjct: 582 YDRGYSSLLKRDFGAKTQNGV 602


>gi|153000172|ref|YP_001365853.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|160874799|ref|YP_001554115.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|151364790|gb|ABS07790.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|160860321|gb|ABX48855.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315267037|gb|ADT93890.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 451

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 135/445 (30%), Positives = 214/445 (48%), Gaps = 11/445 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F D  L  +++ ++   G  +PT IQ + +P+ L   D+   ++TG+GKT +F+LP +
Sbjct: 1   MQFTDFSLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++       R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRVISTRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +    ++ TPGRI DH  +  L +N +E+LV+DEADRMLD+GF P ++ I       R+
Sbjct: 121 AKEPHFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAADHKRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +              V   ++ +E  +         +      L   L
Sbjct: 181 QTLMFSATLDHDEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDHKEALLARL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +T K  IIF   + +   L   L  QGF+  A+ G++ Q +R +I+  F  G  Q++
Sbjct: 241 LKDETHKQVIIFTATRPDTERLAAKLTAQGFATAALSGDLKQAARNQIMDQFARGQQQVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +   
Sbjct: 301 VTTDVASRGLDLLNVSLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNFKK 360

Query: 360 IEKLIEK-----KVDWLNGDLSSLNPPLEKI---DIAQHNHARKNNPIPQKSTGFDRRKK 411
           ++  + K      +  L    S L    ++     +A+   A+  +   + +T    R K
Sbjct: 361 VQVFLRKTFEISTIPGLEAKFSGLKSKAKQTPAKRVAKAELAKGKSKRTKAATPAPSRDK 420

Query: 412 NYSSQK--SHIPLKESEKISKLQQD 434
            + +       P+++    +KL QD
Sbjct: 421 RFITGVDIGDAPMRKKPAAAKLLQD 445


>gi|300865385|ref|ZP_07110194.1| DEAD/DEAH box helicase-like [Oscillatoria sp. PCC 6506]
 gi|300336620|emb|CBN55344.1| DEAD/DEAH box helicase-like [Oscillatoria sp. PCC 6506]
          Length = 480

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 132/373 (35%), Positives = 206/373 (55%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LG+S + +  +   G+ +PTPIQ + IP +L   DV G AQTGTGKTA+F LP+L
Sbjct: 3   LTFESLGISEERIRHLETLGFSEPTPIQTQAIPHLLAGRDVVGQAQTGTGKTAAFSLPIL 62

Query: 61  TILEKGRARVR----MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQ 115
             ++ G   V+     P   +     E   +++   E   K       L +  G   + Q
Sbjct: 63  ERIDLGVTAVQALILTPTRELALQVTEAIRELSGLSEGPVKLGRSLQVLTVYGGQSIDRQ 122

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L RG  +++ TPGRI+D  NRG L ++ ++ +V+DEAD ML MGFI  ++ I    P
Sbjct: 123 MQRLRRGVHIVVGTPGRIIDMLNRGSLKLDQLKWMVLDEADEMLSMGFIQDVEKILEAAP 182

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              QT  FSATM   ++K+    L++P  + V  P +T + I  C       +SK     
Sbjct: 183 ADHQTAFFSATMEASIRKLVSKHLRSPINVTVEQPKATPKRIRQCVYMVPRGWSKSR--A 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            Q +   +  ++ +IF   +     L   L+  G SV   HGN++Q  R ++LS F +  
Sbjct: 241 LQPILEMEDPESALIFVRTRAAAAELTSQLQAAGHSVDEYHGNLNQAQRERLLSRFHQSQ 300

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++ +VA+D+AARGLD+ D+ HV N+D+P+  E+Y+HRIGRTGRAGR G A TL+   D +
Sbjct: 301 VRWVVATDIAARGLDVNDLTHVINYDLPDSVESYVHRIGRTGRAGREGTAITLIQAVDRR 360

Query: 356 HIDAIEKLIEKKV 368
            +  IE+ + + +
Sbjct: 361 KLRLIERHVRQTL 373


>gi|284042564|ref|YP_003392904.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
 gi|283946785|gb|ADB49529.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
           14684]
          Length = 481

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 141/367 (38%), Positives = 213/367 (58%), Gaps = 6/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS  V+ A+ D GY  P+PIQ + IP +L  +D+ G AQTG+GKTA+F LP++ 
Sbjct: 3   TFADLGLSAPVLEALRDVGYENPSPIQEQAIPPLLAGNDMIGQAQTGSGKTAAFGLPLME 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+    L+L PTREL  QV      YG    + V  + GG P  +Q  +L  
Sbjct: 63  YVDPSDRDVQ---ALVLTPTRELCIQVTQALRSYGARKGIDVVAVFGGAPIRSQQAQLRA 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ T GR+ D  +R  L+++    +V+DEAD MLD+GF+  ++ I +L P +RQT 
Sbjct: 120 GGQIVVGTVGRVKDLISRHSLMLHGTRFVVLDEADEMLDLGFLEDVEKILALTPGSRQTA 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++K+SE +L NP  ++V   + T +T+E   +       +    +   +  
Sbjct: 180 LFSATMPPEIRKLSERYLYNPVHVKVRAATLTVDTVEQFSLEMSQ---RDKPDMLGTVLE 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I+F   K     L  +L  +G +V A+HG++ Q  R  ++ +FK G + ++VA
Sbjct: 237 SEKPDQAIVFVRTKIRCDQLYRTLRDRGMNVKALHGDMSQGQRDGVMLSFKSGRLPILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV NFDVP   + Y+HRIGRTGR GR G+A T    +  + I+AIE
Sbjct: 297 TDVAARGLDISSVTHVVNFDVPTSPDVYVHRIGRTGRVGRSGRAITFYDSKQKRDIEAIE 356

Query: 362 KLIEKKV 368
           +     +
Sbjct: 357 RHTRTPM 363


>gi|224112054|ref|XP_002316069.1| predicted protein [Populus trichocarpa]
 gi|222865109|gb|EEF02240.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 136/379 (35%), Positives = 219/379 (57%), Gaps = 2/379 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G   +++  +  AG+V PTPIQ +T P+ LQ  D+  IA+TG+GKT  +++P  
Sbjct: 148 MTFEATGFPSEILRDIHSAGFVSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAF 207

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L++ R   +  P  L+L PTRELA Q+ D   K+G++  ++   L GG P   Q K+L
Sbjct: 208 ILLQQRRNNAQNGPTVLVLAPTRELATQIQDEVMKFGRSSRVSCTCLYGGAPKIPQLKEL 267

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGAD+++ TPGR+ D     ++    + +LV+DEADRMLDMGF P I+ I + +P  RQ
Sbjct: 268 ERGADIVVATPGRLNDILEMKRIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPQRQ 327

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+F+AT   E++K++ + L +P ++ + +    +               +K   L+Q+L
Sbjct: 328 TLMFTATWPKEVRKIASDLLVHPVQVNIGSVDVLSANKSITQYVEVVPQMEKDRRLEQIL 387

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++Q+     II     K + +       + F   AIHG+  Q  R   L+ F+ G   ++
Sbjct: 388 RTQERGSKAII-FCSTKRLCDQLARSIGRNFGAAAIHGDKSQGERDWALNQFRSGKSPIL 446

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI D+  V N+D P+  E+Y+HRIGRTGRAG  G ++T  +++D K+   
Sbjct: 447 VATDVAARGLDIKDIRIVINYDFPSGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKYAAD 506

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + KL+E     +  ++  +
Sbjct: 507 LVKLLEGANQHVPVEVREM 525


>gi|156548270|ref|XP_001601432.1| PREDICTED: similar to GA21647-PA [Nasonia vitripennis]
          Length = 460

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 133/402 (33%), Positives = 219/402 (54%), Gaps = 7/402 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLG+   +  A  D  +  PT IQ + IPL +Q  DV G+A+TG+GKTA+F LP+L
Sbjct: 24  LTWKDLGIVDSLCQACEDLKWKAPTKIQREAIPLTIQGKDVIGLAETGSGKTAAFALPIL 83

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN-KKL 119
             L +   R      LIL PTRELA Q+++ FE  G +  +   +++GG+    Q+    
Sbjct: 84  QALLENPQRYFA---LILTPTRELAFQISEQFEALGASIGVKCVVIVGGMDMMTQSLMLA 140

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   ++      +    N     + +++ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 141 KKPHIIIATPGRLVDHLENTKGFNLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERR 200

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATMT ++QK+    LQNP ++EV+T   T E ++  +V       K   +    +
Sbjct: 201 TLLFSATMTKKVQKLQRASLQNPVKVEVSTKYQTVEKLQQYYVFIPV---KFKDVYLVHI 257

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++ +  + +IFC+   N +     L   GF    +HG + Q  R+  L+ FK     ++
Sbjct: 258 LNELSGNSFMIFCSTCNNTMRTALLLRSLGFMAVPLHGQMSQNKRIAALTKFKAKNRSIL 317

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR G + T V + D++    
Sbjct: 318 ISTDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGISVTFVTQYDVELYQR 377

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           IE+LI K++     +   +    E++  AQ     +   I +
Sbjct: 378 IEQLIGKQLPIYKTEEQEVMVLQERVAEAQRMVKMEMKDIEE 419


>gi|145298647|ref|YP_001141488.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851419|gb|ABO89740.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 431

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 157/404 (38%), Positives = 233/404 (57%), Gaps = 7/404 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P+++ AV D GY + TP+Q + IP + +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MRFESFDFAPEILRAVSDCGYQEMTPVQRQAIPTIRRGLDVLASAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L    A ++       IL PTRELAAQVA N   + K  ++TV  L+GG   + Q KK
Sbjct: 61  QRLVDKPAELQPSNARVLILTPTRELAAQVASNINDFAKYLDVTVLTLVGGGKQDVQAKK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ GA +++ TPGR+L+H     L ++ +E LV+DEADR+LDMGF   +Q I   V   R
Sbjct: 121 LKAGAHIIVATPGRLLEHLTACNLSLSGVECLVLDEADRILDMGFSADVQQILQAVNKER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +D ++K++   L  P+ I VN  +STA+T+ H          K+   L   
Sbjct: 181 QNLLFSATFSDGVKKLANVMLDKPQIISVNKQNSTADTVTHTVYPVEQ---KRKRELLSE 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +      ++F + +++   L   L   G     +HG+  Q SR + L  F EG +++
Sbjct: 238 LIGKQNWPQVLVFASTRESCDELVAELNLDGIKSAVVHGDKAQGSRRRALREFTEGKLRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDIPD+ +V N+D+P  AE+Y+HRIGRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIPDLQYVVNYDLPFLAEDYVHRIGRTGRAGKSGMAISFVSREEERTLL 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
            IE LI +K+  +      +    E I   Q    R+    PQ+
Sbjct: 358 EIEALIGQKIRRVMAKGYEVGNRDELIKQLQER--RRFGKRPQR 399


>gi|242042443|ref|XP_002468616.1| hypothetical protein SORBIDRAFT_01g049070 [Sorghum bicolor]
 gi|241922470|gb|EER95614.1| hypothetical protein SORBIDRAFT_01g049070 [Sorghum bicolor]
          Length = 454

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 135/432 (31%), Positives = 220/432 (50%), Gaps = 9/432 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+  ++V A    G+ +PT IQ + IP  LQ  D+  +AQTG+GKT +F LP+L 
Sbjct: 25  TFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTGAFALPILQ 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   R   +     +L PTRELA Q+A+ FE  G    L  ++L+GG+    Q   + +
Sbjct: 85  ELLSNRQAEQSFFACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSIGK 144

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +          +  I+ LV+DEAD++L++ F   + +I   +P  R+T
Sbjct: 145 RPHIVVGTPGRLLDHLTETKGFSLKKIKYLVLDEADKLLNVEFEKSLDDILREIPKDRRT 204

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+    L+NP ++E  +  ST ++++  F    A       L     +
Sbjct: 205 FLFSATMTKKVNKLQRACLRNPAKVEAASKYSTVDSLKQEFYFVPADDKDCYLLHVLNER 264

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +    IF    ++   L   L   G    +I G + Q  R+  L+ FK     +++
Sbjct: 265 QDSMIM---IFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKAKDCNILI 321

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A+RGLDI  V  V N+D+P  +++Y+HR+GRT RAGR G A +LV + + +    I
Sbjct: 322 CTDVASRGLDIQGVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVNQYEAQWFVLI 381

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK-----NNPIPQKSTGFDRRKKNYSS 415
           EKL+ K++D    D   +      I  A+     K      +   +K+   D   ++YS 
Sbjct: 382 EKLLGKQIDQRKVDRDEVMILKGPISDAKRIALTKLKDSGGHKKRRKAGDDDEEVEDYSH 441

Query: 416 QKSHIPLKESEK 427
            K     K+S +
Sbjct: 442 SKRPKSFKKSNR 453


>gi|194216755|ref|XP_001495197.2| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX5
           (DEAD box protein 5) (RNA helicase p68) [Equus caballus]
          Length = 614

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 135/441 (30%), Positives = 221/441 (50%), Gaps = 6/441 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 154 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 213

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 214 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N  L  L                  R++     K  GF+  +   +
Sbjct: 454 SDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 513

Query: 415 SQKSHIPLKESEKISKLQQDI 435
             + +  L + +  +K Q  +
Sbjct: 514 YDRGYSSLLKRDFGAKTQNGV 534


>gi|126340121|ref|XP_001371236.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 542

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 133/433 (30%), Positives = 217/433 (50%), Gaps = 7/433 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++  +  A    G+  PT IQI+ IP+ L   D+ G+A+TG+GKT +F LP+L 
Sbjct: 109 TFKDLGVTDVLCDACDQLGWKTPTKIQIEAIPMALDGRDIIGLAETGSGKTGAFALPILN 168

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L     R      L+L PTRELA Q+++ FE  G +  +  A+++G            +
Sbjct: 169 ALLDTPQRFFA---LVLTPTRELAFQISEQFEALGSSIGVECAVIVGGIDSMSQSLALAK 225

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      I    N     +  ++ LV+DEADR+L+M F   +  I  L+P  R+T
Sbjct: 226 KPHVIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKLIPRDRKT 285

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++          SK        + 
Sbjct: 286 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ---YYLFIPSKFKDSYLVYIL 342

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + ++FC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 343 NELAGNSFMVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILL 402

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GK+ T V + D++    I
Sbjct: 403 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELYQRI 462

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI KK+         +    E++  AQ     +     +K   F   K +    ++  
Sbjct: 463 EHLIGKKLPAFPTQEEEVMLLTERVAEAQRFARMEMREQGEKRKRFREDKDDNDDTENAT 522

Query: 421 PLKESEKISKLQQ 433
            ++      K+++
Sbjct: 523 GVRNKVTGGKMKK 535


>gi|326934515|ref|XP_003213334.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like
           [Meleagris gallopavo]
          Length = 482

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 154/469 (32%), Positives = 236/469 (50%), Gaps = 15/469 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL+P +V      G  +PTP+Q   IP +LQ  D  G A+TG+GKTA+FVLP+L +
Sbjct: 4   FRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQV 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L            L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  L---SEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRK 120

Query: 123 ADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI---QNITSLVPFTR 178
             V+I TPGR      +     +  ++ LV+DEADR+L+ G   +    + I   VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIE-VNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTLLFSAT+TD L ++    +  P   E  +   +  E  +   +   A        L Q
Sbjct: 181 QTLLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAVKDAYLVHLIQ 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             Q +    + IIF    K    L   L K  F   A+H  + QR R   L+ FK    +
Sbjct: 241 TFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSIFK 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARGLDIP V  V N + P   + YIHR+GRT RAGR+G + T+V + DI  +
Sbjct: 301 ILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIHLV 360

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH-NHARKNNPIPQKSTGFDRRKKNYSSQ 416
            AIE+ I+ K+   + +   +      +DI  H N  R+   I  +   FD +K+    +
Sbjct: 361 HAIEEEIKLKLQEFSVEEKLV------LDILNHVNVTRRECEIELEYMDFDEKKEINKRK 414

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDKL 465
           +  +  K+ +   K + ++ +    +  FR  +   +  K + ++  KL
Sbjct: 415 QMILEGKDPDLEEKRKAELAKIKKKNNKFREKVQQTLQEKKQLQMKRKL 463


>gi|304383161|ref|ZP_07365635.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella marshii
           DSM 16973]
 gi|304335738|gb|EFM01994.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella marshii
           DSM 16973]
          Length = 608

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 132/371 (35%), Positives = 210/371 (56%), Gaps = 8/371 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+S ++  A+ + G+  P P+Q + IP +L   +DV  +AQTGTGKTA++ LP++
Sbjct: 3   TFEELGVSEEIRHAIEELGFEHPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAYGLPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             ++      +  + L+L PTREL  Q+AD+   + K  N    + + G    E Q + L
Sbjct: 63  QKIDT---ESKTTQALVLSPTRELCLQIADDLTAFSKYINGLHVVPVYGGASIETQIRSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  +++ TPGR++D  +RG   + N+  +V+DEAD ML+MGF   I  I   +P  R 
Sbjct: 120 RHGVQIIVATPGRLIDLMHRGVAKLENVSNVVLDEADEMLNMGFSDSINEIFEGIPADRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E++K++ N+L + K I V + +  AE + H     Y   +K   L  + +
Sbjct: 180 TLLFSATMSREIEKIARNYLHDHKEIVVGSRNEGAENVNH---IYYMVNAKDKYLALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIFC  K+    +   L   G++   +HG++ Q  R   +  F++   Q +
Sbjct: 237 VDYYPHIFAIIFCRTKRETQEVADKLIHDGYNAEPLHGDLSQPQRDLTMQKFRQHMTQFL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   + A
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDVESYTHRSGRTGRAGKKGTSIAIIHTRERSKMRA 356

Query: 360 IEKLIEKKVDW 370
           IEK+I KK D 
Sbjct: 357 IEKIIGKKFDE 367


>gi|296201830|ref|XP_002748194.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 1
           [Callithrix jacchus]
          Length = 614

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 135/441 (30%), Positives = 221/441 (50%), Gaps = 6/441 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 154 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 213

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 214 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N  L  L                  R++     K  GF+  +   +
Sbjct: 454 SDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 513

Query: 415 SQKSHIPLKESEKISKLQQDI 435
             + +  L + +  +K Q  +
Sbjct: 514 YDRGYSSLLKRDFGAKTQNGV 534


>gi|224089124|ref|XP_002308641.1| predicted protein [Populus trichocarpa]
 gi|222854617|gb|EEE92164.1| predicted protein [Populus trichocarpa]
          Length = 440

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 137/438 (31%), Positives = 226/438 (51%), Gaps = 10/438 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            FADLG+  ++V A    G+  PT IQ++ IP  L+  D+  +AQTG+GKTA+F LP + 
Sbjct: 11  TFADLGICEQLVEACERLGWKNPTKIQVEAIPHALEGKDLIALAQTGSGKTAAFALPTLQ 70

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+     V +    +L PTRELA Q+A+ FE  G +  L  A+L+GG+    Q   L 
Sbjct: 71  ALLQASVTSVPVFYACVLSPTRELAIQIAEQFEALGSDIGLRCAVLVGGVDMGLQTIALA 130

Query: 121 RGADVLICTPGRI-LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   +++ TPGR+     N     +  ++ L++DEADR+L+  F   +  I +++   R+
Sbjct: 131 KRPHIVVGTPGRLLDHLSNTKGFSLRTLKYLILDEADRLLNEEFEKSLDEILTVISRDRK 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L+NP +IEV +  S  ET+           +K         
Sbjct: 191 TYLFSATMTKKVRKLQRACLRNPVKIEVASKYSVVETLRQ---QLLFCPAKYKECYLVHA 247

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +  +  + ++F         L   L   G     I+G++ Q  R+  L+ FK G   ++
Sbjct: 248 LTLKSGASTMVFTRTCDATHFLALVLRNLGLRAIPINGHMSQSKRLGALNKFKAGECNIL 307

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR G A +LV + +I     
Sbjct: 308 ICTDVASRGLDIPSVDMVVNYDIPTNSKDYIHRVGRTARAGRSGLAISLVNQNEIGWFKQ 367

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE LI  ++  +      +   LE++       A++ +    K  G  +RK      +  
Sbjct: 368 IENLIGIRMSDIRPHQEEIMLLLERV-----TEAKRISQKQIKEPGGKKRKGRGDEDEEE 422

Query: 420 IPLKESEKISKLQQDIQE 437
           I    S+K  + ++  + 
Sbjct: 423 IDKYISKKDGRFKKKNKR 440


>gi|157107875|ref|XP_001649978.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108868632|gb|EAT32857.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 526

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 116/443 (26%), Positives = 197/443 (44%), Gaps = 12/443 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLGL P +   +   G  +PTPIQ   IP +L   D  G A+TG+GKT +F LP+L 
Sbjct: 8   KFSDLGLKPWIANQMDKLGLRRPTPIQEACIPRILDGQDCIGAAKTGSGKTFAFALPILQ 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L            L+L PT ELA Q+A+ F   G+  ++ V ++ GG     + ++L+ 
Sbjct: 68  RL---SEEPTSNFALVLTPTHELAYQIAEQFSVAGQPMSVKVCVITGGTDQLLEAQRLQS 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++  PGR+  H              ++ +    +  G               ++  
Sbjct: 125 RPHIVVAMPGRLASHLTGCNTYSFRAMQFLVVDEADRVLSGSFDEDLAAIDSFLPKKRQN 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPS---STAETIEHCFVATYAQYSKKCALLQQL 238
           LF +    E  + +  F       E +  S   +     +   +              + 
Sbjct: 185 LFFSATLKEFMRENSVFPIGADAFEWSEESEVATVETLDQRYILCADYDRDMVLIETLRK 244

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +  +   + +IF N KK+   L  +L   GF    +HG + Q+ R+  L+ FK   +++
Sbjct: 245 FKEDNEEASVMIFTNSKKDCQVLSMTLNTIGFDNVCLHGFLRQKERVAALNRFKSKHVRV 304

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHI 357
           ++A+D+A+RGLDIP+V  V N  +P     YIHR+GRT RAGR G A ++     D++ +
Sbjct: 305 LIATDVASRGLDIPNVQLVLNHRLPKIPNEYIHRVGRTARAGRKGLAISIFRFPRDLEFL 364

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE LI  K+     D       +E+I   Q + AR+   +   +  FD R+ NY  +K
Sbjct: 365 GEIESLINTKLTEHPID----QRLVERI-FMQVSVARREAEMNLDNKDFDERQHNYRRKK 419

Query: 418 SHIPLKESEKISKLQQDIQENDA 440
                 + +++    +  +E  A
Sbjct: 420 WIEQGLDPDEMEAKWKQEKETRA 442


>gi|312796956|ref|YP_004029878.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
 gi|312168731|emb|CBW75734.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
          Length = 508

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 164/381 (43%), Positives = 227/381 (59%), Gaps = 10/381 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F   GL+  ++ A+ + GY KPTPIQ + IP+VL   DV G AQTGTGKTASF LP++
Sbjct: 42  LSFDGFGLAAPILQAIGEQGYTKPTPIQAQAIPIVLAGRDVMGAAQTGTGKTASFSLPII 101

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L    +    P        IL PTRELA QVA N   Y K+  L  A++ GG+    Q
Sbjct: 102 QRLLPLASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNPQ 161

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L RG ++LI TPGR+LDH  +    +  +++LV+DEADRMLDMGF+P +Q I +L+P
Sbjct: 162 TAELRRGVEILIATPGRLLDHVQQKSTSLAQVQMLVLDEADRMLDMGFLPDLQRILNLLP 221

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT + E++K++  +L++P  IEV   +STA  +            +   + 
Sbjct: 222 SQRQTLLFSATFSAEIKKLASTYLRDPVTIEVARSNSTASNVRQIVFEVAEPDKQAAVVQ 281

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 Q  +K  I+FCN K     L   LE+ G    AIHG+  Q  RM+ L  FK G 
Sbjct: 282 L---IRQRELKQVIVFCNSKIGASRLAKQLERDGVVATAIHGDRSQSERMQALDAFKRGE 338

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+ +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G A +L +  + K
Sbjct: 339 IEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFSGNERK 398

Query: 356 HIDAIEKLIEK--KVDWLNGD 374
            +  IEKLI++   ++ L  D
Sbjct: 399 QLADIEKLIKRALTIEPLELD 419


>gi|261402374|ref|YP_003246598.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius
           M7]
 gi|261369367|gb|ACX72116.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius
           M7]
          Length = 404

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 142/430 (33%), Positives = 230/430 (53%), Gaps = 34/430 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPM 59
           M+F +L LS   + AV + G+ KPT IQ K IPL L    ++   A+TG+GKTASF LP+
Sbjct: 6   MNFEELNLSENTLNAVRNKGFEKPTDIQTKVIPLFLNGEKNIVAQARTGSGKTASFALPL 65

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + ++ +G       + +IL PTRELA QVAD       N NL +  + GG P + Q  K 
Sbjct: 66  IELINEGEG----IKAIILTPTRELAIQVADEINSLKGNKNLKIVKVYGGTPIQPQI-KY 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            + A++++ TPGR+LDH NRG L + ++E  ++DEAD ML+MGFI  ++ I +     R+
Sbjct: 121 LKNANIVVGTPGRVLDHINRGTLNLKDVEYFILDEADEMLNMGFIDDVEKILNACNKNRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  E+  +++ +        +N               T+ +  +         
Sbjct: 181 ILLFSATMPVEILNLAKKY--------MNDYEFVRAKRNADIEQTFIEVDENKRFETLCR 232

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +D    G++FC  KK+  +L + L   GF   AIHG++ Q  R K++  FK+  I+++
Sbjct: 233 ILRDRNFYGLVFCKTKKDTKDLANMLRDIGFKAGAIHGDLKQHQREKVVRLFKQKRIKIL 292

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+ +RG+D+ D+ HV N+ +P   E Y+HRIGRTGRAG+ GKA +++ +++ + +  
Sbjct: 293 IATDVMSRGIDVNDLSHVVNYHLPQTPEAYMHRIGRTGRAGKKGKAISIINRKEYRKLKH 352

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+ ++ K+   N                     +  N    KS   +++   +   KS 
Sbjct: 353 IERTMKLKIKKYN--------------------TKNYNAKNIKSMKNEKKMNQFKEHKSK 392

Query: 420 IPLKESEKIS 429
             +K+ EK  
Sbjct: 393 NEMKKLEKTE 402


>gi|302412236|ref|XP_003003951.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
 gi|261357856|gb|EEY20284.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
          Length = 486

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 144/421 (34%), Positives = 221/421 (52%), Gaps = 17/421 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+   +V A    GY  PTPIQ K+IPL L   DV G+A+TG+GKTA+F LP+L 
Sbjct: 62  SFADLGVVESLVEATEALGYKHPTPIQEKSIPLALAGRDVIGLAETGSGKTAAFALPVLQ 121

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +      +++ PTRELAAQ+A  FE  G   NL  A+++GG+    Q   L +
Sbjct: 122 AL---LEKPSGLFAVVMAPTRELAAQIAQTFEALGSLINLRCAVIVGGLDMVQQAIALGK 178

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR +          + +++ LV+DEADR+LDM F P I  I   +P  R T
Sbjct: 179 KPHVVVATPGRLLDHLEKTKGFSLRSLKYLVLDEADRLLDMDFGPSIDKILKFIPRERHT 238

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L++P R+ V +      +             K    +   L 
Sbjct: 239 YLFSATMSSKVESLQRASLKDPARVSVQSNGYQVVSTLLQNFLFIPHALKDVYCV--HLI 296

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +    +  I+F     +   L   L   GFS   +HG + Q +R+  L+ F+ G+  ++V
Sbjct: 297 NSFIGQTTIVFLRTVHDTQRLAILLRTLGFSALPLHGQLSQSARLGALNKFRAGSRDILV 356

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP+V  V N+D+P  ++ YIHR+GRT RAG+ G+A +LV + D++    I
Sbjct: 357 ATDVAARGLDIPNVDVVINYDLPQDSKTYIHRVGRTARAGKSGRALSLVTQYDLEIWLRI 416

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ-----------HNHARKNNPIPQKSTGFDRR 409
           E  + KK+D    +   +     +++ AQ            N  +K   +  K  G  +R
Sbjct: 417 EASMGKKLDEFPTEKEEVMVFQARVEEAQRHARIEMKHLMENRGKKGAVLKGKFVGDSKR 476

Query: 410 K 410
           +
Sbjct: 477 R 477


>gi|119496543|ref|XP_001265045.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL
           181]
 gi|143462290|sp|A1D405|RRP3_NEOFI RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|119413207|gb|EAW23148.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL
           181]
          Length = 472

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 140/426 (32%), Positives = 226/426 (53%), Gaps = 8/426 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+  ++  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 53  SFKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQ 112

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    LIL PTRELA Q++ +FE  G   N+  A+++GG+   +Q+  L +
Sbjct: 113 AL---MEKPQSFFGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGK 169

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +    N     +  ++ LV+DEADR+LDM F P +  I  ++P  R+T
Sbjct: 170 KPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRT 229

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L NP R  V+  S+  +T+     +      K   +    L 
Sbjct: 230 FLFSATMSSKVESLQRASLSNPLR--VSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYLL 287

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ IIF         +   L   GF    +HG + Q +R+  L  F+  +  ++V
Sbjct: 288 NEFVGQSAIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILV 347

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V NFD+P  ++ Y+HR+GRT RAG+ G A + V + D++    I
Sbjct: 348 ATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRI 407

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  + KK+     +   +    E++  AQ     +     +K     + KK    ++S  
Sbjct: 408 EGALGKKLKEYELEKDEVMVLAERVGEAQRQAIVEMKNFDEKRGT--KAKKFGKGKRSRD 465

Query: 421 PLKESE 426
            + + E
Sbjct: 466 EMDQEE 471


>gi|169854086|ref|XP_001833720.1| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130]
 gi|116505187|gb|EAU88082.1| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130]
          Length = 455

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 142/390 (36%), Positives = 212/390 (54%), Gaps = 7/390 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL   ++ A+   GY  PT IQ +++P  L+  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 20  TFKSLGLIDPLLEALEQVGYKSPTEIQSESLPHALEGRDIIGVAETGSGKTAAFALPILQ 79

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L       +     +L PTRELA Q++  FE  G       A+++GG+    Q   L +
Sbjct: 80  KL---WEEPKGLFACVLAPTRELAYQISQQFEALGAAMGARCAVIVGGMDLPTQAIALAK 136

Query: 122 GADVLICTPGRI-LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR+           +  ++ LV+DEADR+LDM F P I  I  L+P  R T
Sbjct: 137 RPHVVVATPGRLLQHLEETKGFSLRTLKFLVLDEADRLLDMDFGPAIDKILKLIPKERTT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+    L NP R+EV+    T  T+   ++       K   ++   L 
Sbjct: 197 YLFSATMTSKVAKLQRASLVNPVRVEVSGKYQTVSTLLQHYLLVPL---KDKVVMLIYLA 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +     + IIF    ++   L   L   GF    +HG + Q  R+  L  FK G  +++V
Sbjct: 254 NSLAQNSIIIFTRTVRDARLLSIILRTLGFPAVPLHGQLSQSQRLGALGKFKSGGRKILV 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR GKA TLV + D++ +  I
Sbjct: 314 ATDVASRGLDIPSVDVVINYDIPTHSKDYIHRVGRTARAGRAGKAITLVTQYDVELLQRI 373

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           EK+I KK+D    D   +    E++  A+ 
Sbjct: 374 EKVIGKKMDAWPTDDEEVLLLKERVSEAER 403


>gi|55562721|gb|AAH86320.1| Ddx5 protein [Mus musculus]
          Length = 648

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 135/441 (30%), Positives = 221/441 (50%), Gaps = 6/441 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 127 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 186

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 187 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 246

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 247 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 306

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 307 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 366

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 367 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 426

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 427 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 486

Query: 358 DAIEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N  L  L                  R++     K  GF+  +   +
Sbjct: 487 SDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 546

Query: 415 SQKSHIPLKESEKISKLQQDI 435
             + +  L + +  +K Q  +
Sbjct: 547 YDRGYSNLLKRDFGAKTQNGV 567


>gi|224088798|ref|XP_002308545.1| predicted protein [Populus trichocarpa]
 gi|222854521|gb|EEE92068.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 193/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  TFDAMNLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     +   + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 101 QLDY---DIVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSA 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLSDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     V+ L  +++ L
Sbjct: 396 RFYNVTVEELPSNVADL 412


>gi|19114747|ref|NP_593835.1| ATP-dependent RNA helicase Rrp3 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|74654514|sp|Q9P6N8|RRP3_SCHPO RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|7708606|emb|CAB90153.1| ATP-dependent RNA helicase Rrp3 (predicted) [Schizosaccharomyces
           pombe]
          Length = 465

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 155/426 (36%), Positives = 230/426 (53%), Gaps = 16/426 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+  ++  A    G+  PTPIQ + IP+VL + DV G+AQTG+GKTA+F LP++ 
Sbjct: 47  TFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQ 106

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L            ++L PTRELA Q+++ FE  G +  +   +++GG+    Q   L +
Sbjct: 107 ELWNN---PSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSK 163

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              VL+CTPGR++DH  N     + N++ L++DEADR+LDM F P I  I  ++P  R+T
Sbjct: 164 KPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRT 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATMT +++K+    L  P R+ V++  ST +T+   ++       K        L 
Sbjct: 224 LLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPF---KHKDTYLVYLV 280

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + IIF     +   L   L   GFS   +HG + Q +R+  L+ FK G    +V
Sbjct: 281 NELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLV 340

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V N+D+P  ++ YIHR+GRT RAGR GK+  LV + D++    I
Sbjct: 341 ATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFLRI 400

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  I KK+     D   +    E++  AQ     +   I       DRRK   S  K H 
Sbjct: 401 EATIGKKMQEYEIDKEGVFLLSERVGEAQREAIIQMKEI------HDRRK---SKGKLHT 451

Query: 421 PLKESE 426
             K  +
Sbjct: 452 KRKRDD 457


>gi|292486843|ref|YP_003529713.1| cold-shock DEAD box protein A [Erwinia amylovora CFBP1430]
 gi|292900759|ref|YP_003540128.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291200607|emb|CBJ47739.1| ATP-dependent RNA helicase (cold-shock dead-box protein) [Erwinia
           amylovora ATCC 49946]
 gi|291552260|emb|CBA19297.1| Cold-shock DEAD box protein A [Erwinia amylovora CFBP1430]
 gi|312170911|emb|CBX79170.1| Cold-shock DEAD box protein A [Erwinia amylovora ATCC BAA-2158]
          Length = 638

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 135/378 (35%), Positives = 228/378 (60%), Gaps = 8/378 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+  ++ ++   GYVKP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLH 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     V+ P+ L+L PTRELA QVA+   ++ K+      + +  G  ++ Q + L 
Sbjct: 67  NIDPT---VKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + ++++++ F+++P+ + + +  +T   I   +   Y + +       +   
Sbjct: 184 ALFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSYWTAYGRKTDALTRFLE--- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 -AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 359

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 360 ERTMKLTIPEVELPNAEL 377


>gi|145502420|ref|XP_001437188.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404337|emb|CAK69791.1| unnamed protein product [Paramecium tetraurelia]
          Length = 395

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 124/382 (32%), Positives = 201/382 (52%), Gaps = 4/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  ++  +   G+ +P+ IQ K I  ++   DV   AQ+GTGKT +F +  L 
Sbjct: 18  TFEELTLSKDLLRGIFSYGFERPSAIQQKAIKPIILGKDVLAQAQSGTGKTGTFTIGALQ 77

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  + + ++    IL P RELA Q+ D  +  G+  N+     IGG   +   +K ++
Sbjct: 78  RIDPNQRKTQVI---ILAPVRELAKQIYDVVKGIGQYLNIEAFCCIGGTSTQETREKCKQ 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR++D      L    + +LV+DEAD+MLD GF      I  +VP   Q  
Sbjct: 135 GVHIIIATPGRLIDMMKNKYLDATFMRLLVVDEADQMLDQGFSDNFAEILKMVPGDIQIA 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   E+ ++S+ FL+      +             F     Q  +K  +L + L  
Sbjct: 195 LFSATFPQEIIELSKQFLREGTAKILVKKEQLTLEGIRQFYIAIQQEDQKFRVLVE-LYK 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   I+FCN KK V +L   L  +GF+V  IH  ++Q+ R +++  FK+G  +++V+
Sbjct: 254 NLTVSQSILFCNSKKTVDDLHDKLTAEGFTVSKIHSQMEQKEREQVMQEFKKGAARILVS 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+D+  +  V N++ P   E YIHR+GR GR GR G A  +VA+++   +  +E
Sbjct: 314 TDLMGRGIDVQQLSLVINYEFPRLKEQYIHRVGRAGRYGRKGVAINMVAQQEANLLLEVE 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           K    K+D +  DL+ +   L 
Sbjct: 374 KYYNTKIDEMPKDLAEVEKELS 395


>gi|145500870|ref|XP_001436418.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124403557|emb|CAK69021.1| unnamed protein product [Paramecium tetraurelia]
          Length = 395

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 124/382 (32%), Positives = 201/382 (52%), Gaps = 4/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  ++  +   G+ +P+ IQ K I  ++   DV   AQ+GTGKT +F +  L 
Sbjct: 18  TFEELTLSKDLLRGIFSYGFERPSAIQQKAIKPIILGKDVLAQAQSGTGKTGTFTIGALQ 77

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  + + ++    IL P RELA Q+ D  +  G+  N+     IGG   +   +K ++
Sbjct: 78  RIDPNQRKTQVI---ILAPVRELAKQIYDVVKGIGQYLNIEAFCCIGGTSTQETREKCKQ 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR++D      L    + +LV+DEAD+MLD GF      I  +VP   Q  
Sbjct: 135 GVHIIIATPGRLIDMMKNKYLDATFMRLLVVDEADQMLDQGFSDNFAEILKMVPGDIQIA 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   E+ ++S+ FL+      +             F     Q  +K  +L + L  
Sbjct: 195 LFSATFPQEIIELSKQFLREGTAKILVKKEQLTLEGIRQFYIAIQQEDQKFRVLVE-LYK 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   I+FCN KK V +L   L  +GF+V  IH  ++Q+ R +++  FK+G  +++V+
Sbjct: 254 NLTVSQSILFCNSKKTVDDLHDKLTAEGFTVSKIHSQMEQKEREQVMQEFKKGAARILVS 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+D+  +  V N++ P   E YIHR+GR GR GR G A  +VA+++   +  +E
Sbjct: 314 TDLMGRGIDVQQLSLVINYEFPRLKEQYIHRVGRAGRYGRKGVAINMVAQQEANLLLEVE 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           K    K+D +  DL+ +   L 
Sbjct: 374 KYYNTKIDEMPKDLAEVEKELS 395


>gi|4758138|ref|NP_004387.1| probable ATP-dependent RNA helicase DDX5 [Homo sapiens]
 gi|300793700|ref|NP_001178324.1| probable ATP-dependent RNA helicase DDX5 [Bos taurus]
 gi|73965213|ref|XP_850467.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 2 [Canis
           familiaris]
 gi|109116805|ref|XP_001109860.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 [Macaca
           mulatta]
 gi|297487273|ref|XP_002696148.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 2 [Bos
           taurus]
 gi|301778273|ref|XP_002924553.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Ailuropoda melanoleuca]
 gi|332227004|ref|XP_003262677.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 [Nomascus
           leucogenys]
 gi|129383|sp|P17844|DDX5_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5; AltName: Full=RNA helicase p68
 gi|35220|emb|CAA36324.1| unnamed protein product [Homo sapiens]
 gi|38318|emb|CAA33751.1| unnamed protein product [Homo sapiens]
 gi|2599360|gb|AAB84094.1| RNA helicase p68 [Homo sapiens]
 gi|16359122|gb|AAH16027.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Homo sapiens]
 gi|30582725|gb|AAP35589.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase,
           68kDa) [Homo sapiens]
 gi|61362303|gb|AAX42197.1| DEAD box polypeptide 5 [synthetic construct]
 gi|61362310|gb|AAX42198.1| DEAD box polypeptide 5 [synthetic construct]
 gi|119614608|gb|EAW94202.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, isoform CRA_a [Homo
           sapiens]
 gi|119614609|gb|EAW94203.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, isoform CRA_a [Homo
           sapiens]
 gi|123979568|gb|ABM81613.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [synthetic construct]
 gi|123994197|gb|ABM84700.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [synthetic construct]
 gi|168277560|dbj|BAG10758.1| ATP-dependent RNA helicase DDX5 [synthetic construct]
 gi|197692215|dbj|BAG70071.1| ATP-dependent RNA helicase DDX5 [Homo sapiens]
 gi|296476161|gb|DAA18276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 2 [Bos taurus]
          Length = 614

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 135/441 (30%), Positives = 221/441 (50%), Gaps = 6/441 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 154 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 213

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 214 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N  L  L                  R++     K  GF+  +   +
Sbjct: 454 SDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 513

Query: 415 SQKSHIPLKESEKISKLQQDI 435
             + +  L + +  +K Q  +
Sbjct: 514 YDRGYSSLLKRDFGAKTQNGV 534


>gi|327396268|dbj|BAK13690.1| cold-shock DEAD box protein A DeaD [Pantoea ananatis AJ13355]
          Length = 630

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 134/378 (35%), Positives = 229/378 (60%), Gaps = 8/378 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGL+ +++ ++   GYVKP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFAELGLNAELLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLH 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     V+ P+ L+L PTRELA QVA+   ++ K+      + +  G  ++ Q + L 
Sbjct: 67  NIDPT---VKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + ++++++ F+++P+ + + +  +T   I   +   Y + +       +   
Sbjct: 184 ALFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSYWTAYGRKTDALVRFLE--- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 -AEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 359

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 360 ERTMKLTIPEVELPNAEL 377


>gi|320325391|gb|EFW81456.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327468|gb|EFW83481.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330877269|gb|EGH11418.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 445

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 137/437 (31%), Positives = 212/437 (48%), Gaps = 15/437 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 2   FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L          R +IL PTRELA Q     E++ +   +   L+ GG  F+ Q   L + 
Sbjct: 62  LIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI TPGR+L+  N G L + ++E+LV+DEADRMLDMGF   ++ +        QT+L
Sbjct: 122 PDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTML 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT T                  +   S +            A ++     +   L + 
Sbjct: 182 FSAT-TGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLAN 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T +  IIF N K     L   L    +    +HG+  Q+ R   +   K+G  ++MVA+
Sbjct: 241 ETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKYQKDRKAAIDRLKQGGAKIMVAT 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  +  V NFD+P   ++Y+HR+GRTGRAG  G A +L+   D   + ++E+
Sbjct: 301 DVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVER 360

Query: 363 LIEKK-----VDWLNGDLSSLNPPLEKIDI---------AQHNHARKNNPIPQKSTGFDR 408
            +++      +  + G                       A+ +  +     P K    +R
Sbjct: 361 YLKQSFERRVIKEVKGTYGGPKKVKASGKAVGVKKKKTDAKGDKKKTAAKGPTKRKTVNR 420

Query: 409 RKKNYSSQKSHIPLKES 425
            K +  SQ    PLK+ 
Sbjct: 421 PKSDLVSQDGMAPLKKR 437


>gi|291616016|ref|YP_003518758.1| DeaD [Pantoea ananatis LMG 20103]
 gi|291151046|gb|ADD75630.1| DeaD [Pantoea ananatis LMG 20103]
          Length = 633

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 134/378 (35%), Positives = 229/378 (60%), Gaps = 8/378 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGL+ +++ ++   GYVKP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 10  TFAELGLNAELLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLH 69

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     V+ P+ L+L PTRELA QVA+   ++ K+      + +  G  ++ Q + L 
Sbjct: 70  NIDPT---VKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRALR 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 127 QGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + ++++++ F+++P+ + + +  +T   I   +   Y + +       +   
Sbjct: 187 ALFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSYWTAYGRKTDALVRFLE--- 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 244 -AEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 303 ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 362

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 363 ERTMKLTIPEVELPNAEL 380


>gi|262164648|ref|ZP_06032386.1| ATP-dependent RNA helicase [Vibrio mimicus VM223]
 gi|262027028|gb|EEY45695.1| ATP-dependent RNA helicase [Vibrio mimicus VM223]
          Length = 448

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 132/447 (29%), Positives = 209/447 (46%), Gaps = 12/447 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLSIAGRDLLASSKTGSGKTLAFVLPML 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR +IL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 61  HKSLKTKAFSAKDPRGVILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH +   L ++ +E LV+DEADRMLD+GF   ++ I +     R+
Sbjct: 121 ARDPKFIVATPGRLADHLDHRSLFLDGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D             +   +     + E  +         +      L + +
Sbjct: 181 QTLMFSATLDHADVNDIAMEMLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLERI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  IIF   + +   L   L +      A+ GN++Q  R  I+S F+    +++
Sbjct: 241 LADAEYRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQAQRNTIMSQFERVVFKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDIP V HV NFD+P   E Y+HRIGRTGRAG  G A +LV  +D      
Sbjct: 301 VTTDVASRGLDIPTVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAMSLVGPKDWDSFKR 360

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +E  +++++ +     L G    L  P +    A  +        P K+     R K++ 
Sbjct: 361 VEAFLQQEIQFEVLDGLAGKFKGL-KPRQATKKAAPSKRTAKTKAPAKAKKPASRDKSFY 419

Query: 415 SQKS-----HIPLKESEKISKLQQDIQ 436
              +      IP K+     +L+Q+ +
Sbjct: 420 QNVAVGDSVFIPKKKVAPKPELEQEDE 446


>gi|149372587|ref|ZP_01891699.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [unidentified eubacterium SCB49]
 gi|149354630|gb|EDM43194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [unidentified eubacterium SCB49]
          Length = 626

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 132/375 (35%), Positives = 217/375 (57%), Gaps = 9/375 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLP 58
           M  F  LGL+ +++ A+ D G+  P+ +Q + IP++L+   D+  +AQTGTGKTA+F  P
Sbjct: 1   MSAFKALGLNDELLQAITDMGFETPSEVQEQAIPILLEEDTDLVALAQTGTGKTAAFGFP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNK 117
           ML  ++      R  + LIL PTREL  Q+ +  + YGK+      + I G      Q +
Sbjct: 61  MLQKIDVA---SRTTQGLILSPTRELCMQITNEMKSYGKHMKGLNVVAIYGGASISDQAR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           ++++GA +++ TPGR+ D  +R  + ++ IE  V+DEAD ML+MGF   I  I S  P  
Sbjct: 118 QIKKGAQIIVATPGRMKDMISRRMIDISKIEYCVLDEADEMLNMGFHEDITEILSHSPQE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           + T LFSATM  E+  +++ F+  P+ I V + ++ +E + H     Y   ++      +
Sbjct: 178 KSTWLFSATMPREVASIAKEFMYQPQEITVGSKNTGSENVTH---EYYLVNARDRYQALK 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   +     ++FC  K++   +   L + G+S  AIHG++ Q  R  ++  F+   IQ
Sbjct: 235 RLADANPEIFSVVFCRTKRDTQKVAEQLIQDGYSAGAIHGDLSQNQRDIVMKQFRSRQIQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MVA+D+AARG+D+ ++ HV N+ +P+  E Y HR GRTGRAG  G +  +V+K +++ I
Sbjct: 295 MMVATDVAARGIDVDNITHVINYQLPDEVETYTHRSGRTGRAGNQGISIVIVSKSEVRKI 354

Query: 358 DAIEKLIEKKVDWLN 372
            +IEK I+KK +   
Sbjct: 355 RSIEKKIQKKFEVKE 369


>gi|238878859|gb|EEQ42497.1| hypothetical protein CAWG_00709 [Candida albicans WO-1]
          Length = 550

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 124/415 (29%), Positives = 194/415 (46%), Gaps = 9/415 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L  +++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTASF++P L 
Sbjct: 31  SFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQ 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    +V+    LIL PTRELA Q +      GK+      +  GG        +L  
Sbjct: 91  LVKPKLNKVQ---ALILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIVRLHD 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD   R  + +    + V+DEAD+ML   F   I+ I    P  RQ L
Sbjct: 148 PVHILVGTPGRVLDLAARKVVDLLECPLFVMDEADKMLSREFKGIIEQILEFFPPNRQAL 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F+                T++           K+       L S
Sbjct: 208 LFSATFPLAVKS----FMDKHLTKPYEINLMDELTLKGISQFYAFVEEKQKLHCLNTLFS 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S    H  + Q++R K+   F++G ++ +V 
Sbjct: 264 KLQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVC 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L++  D   +  IE
Sbjct: 324 SDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYSLYKIE 383

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           + +  ++  +   +       E  D        + + +P+ +     +   Y  Q
Sbjct: 384 QELGTEIKPIPATIDKSLYVAENADAVPRPF--RIDELPKGNETVHNKGYQYKGQ 436


>gi|195339697|ref|XP_002036453.1| GM18037 [Drosophila sechellia]
 gi|195578081|ref|XP_002078894.1| GD23667 [Drosophila simulans]
 gi|194130333|gb|EDW52376.1| GM18037 [Drosophila sechellia]
 gi|194190903|gb|EDX04479.1| GD23667 [Drosophila simulans]
          Length = 459

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 109/375 (29%), Positives = 190/375 (50%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L  +++  + + G+ +P+PIQ   IP+ L   DV   A+ GTGKT ++ +P+L 
Sbjct: 59  EFEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLE 118

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  + +++    L++ PTRELA Q +    +  K+ ++ V +  GG   +    ++ +
Sbjct: 119 QIDPTKDKIQA---LVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQ 175

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD  ++    M++  ILV+DEAD++L + F   + ++   +P   Q L
Sbjct: 176 KVQLIIATPGRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQIL 235

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F++   R           T++           ++       L S
Sbjct: 236 LFSATFPLTVKN----FMEKHLREPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFS 291

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+    IH  + Q  R ++  +F++G  + +V 
Sbjct: 292 KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVC 351

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  IE
Sbjct: 352 SDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIE 411

Query: 362 KLIEKKVDWLNGDLS 376
           K +  ++  +   + 
Sbjct: 412 KELGTEIKPIPKVID 426


>gi|134095506|ref|YP_001100581.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
 gi|133739409|emb|CAL62459.1| Putative ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
          Length = 468

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 145/451 (32%), Positives = 240/451 (53%), Gaps = 33/451 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   ++ A+ ++GY  PT +Q + IP  ++  D+   +QTG+GKTA+F+LP L
Sbjct: 1   MTFESLGLHASIIKALTESGYTAPTGVQAQAIPAAIEGRDMMVSSQTGSGKTAAFMLPAL 60

Query: 61  TIL--------------------------EKGRARVRMPRTLILEPTRELAAQVADNFEK 94
                                        ++ R +   P+ L+L PTRELA QV  + +K
Sbjct: 61  HKFAVQSEQQQPEGGRTPNQEAQSARSRGDRPRFKAAQPKMLVLTPTRELALQVTTSTDK 120

Query: 95  YGKNYNLTVALLI-GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVID 153
           YG       A+ I GG+P+  Q + L +  ++L+ TPGR++DH   GK+  + ++ILV+D
Sbjct: 121 YGAFMKRVKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSELQILVLD 180

Query: 154 EADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
           EADRMLDMGFI  I+ I +  P  RQT+LFSAT+   +  +++   ++P  I++   ++ 
Sbjct: 181 EADRMLDMGFIDDIEKIVAATPEGRQTMLFSATLDGTVGTMAKRITKDPLVIQIAGSATK 240

Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            E I+           K    L   L   +TM   ++F   K++   +   L   GF+  
Sbjct: 241 HENIKQGVHFVDDLSHKNR--LLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAA 298

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
           A+HG++ Q +R + L   + G I+++VA+D+AARG+D+P + HVFN+D+P   E+Y+HRI
Sbjct: 299 ALHGDMHQGARNRTLDGLRRGQIRVLVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 358

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           GRTGRAGR+G A +LV   +  ++  IE+ I++ +      +    P  ++   A  ++ 
Sbjct: 359 GRTGRAGRNGIAVSLVNHAEGMNVKRIERFIKQLIPV--SVIEGFEP--KRTASAPRSNH 414

Query: 394 RKNNPIPQKSTGFDRRKKNYSSQKSHIPLKE 424
           +     P  + G   +    +  K +    E
Sbjct: 415 KPGGWKPGDNRGNAAKPGQRTFSKPNATRNE 445


>gi|82751683|ref|YP_417424.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122]
 gi|123548216|sp|Q2YUH3|Y1965_STAAB RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAB1965c
 gi|82657214|emb|CAI81654.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122]
          Length = 506

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 136/441 (30%), Positives = 225/441 (51%), Gaps = 14/441 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S   V ++   G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +  ++LIL PTRELA QVA+   ++ +   + V  + GG+P E Q K L++
Sbjct: 63  KVVW----KQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L  + I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     F     +  K           
Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFT--NFLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 237 VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 297 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
               +K       +S+L PP  K ++ Q         +    +     +    S +    
Sbjct: 357 DANGRK-------MSALRPPHRK-EVLQAREDDIKEKVENWMSKESESRLKRISTELLNE 408

Query: 422 LKESEKISKLQQDIQENDADS 442
             + + ++ L Q++ E + + 
Sbjct: 409 YNDVDLVAALLQELVEANDEV 429


>gi|126308848|ref|XP_001379329.1| PREDICTED: similar to DDX5 protein [Monodelphis domestica]
          Length = 865

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 135/441 (30%), Positives = 221/441 (50%), Gaps = 6/441 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 345 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 404

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 405 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRD 464

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 465 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 524

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 525 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 584

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 585 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 644

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 645 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 704

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N  L  L                  R++     K  GF+  +   +
Sbjct: 705 SDLISVLREANQAINPKLLQLIEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 764

Query: 415 SQKSHIPLKESEKISKLQQDI 435
             + +  L + +  +K Q  +
Sbjct: 765 YDRGYSSLLKRDFGAKTQNGV 785


>gi|71030100|ref|XP_764692.1| RNA helicase-1 [Theileria parva strain Muguga]
 gi|68351648|gb|EAN32409.1| RNA helicase-1, putative [Theileria parva]
          Length = 400

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 120/376 (31%), Positives = 202/376 (53%), Gaps = 6/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L+  ++  +   G+ +P+ IQ + I  +++ +D  G AQ+GTGKTA+F +  L 
Sbjct: 29  SFDALKLNEDLLRGIYSYGFERPSAIQQRGIKPIIENYDTIGQAQSGTGKTATFSIAALQ 88

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I+      V   + LIL PTRELA Q+       G    +     +GG        KL+ 
Sbjct: 89  IINY---DVMSCQILILAPTRELAQQIQKVVLALGDYLKVQCHACVGGTVVRDDVHKLKA 145

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D   +  LL + +++ ++DEAD ML  GF   IQ++   +P   Q  
Sbjct: 146 GVHMVVGTPGRVYDMIEKKALLTDKMKLFILDEADEMLSRGFKGQIQDVFKRLPPDIQVA 205

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +E+ +++  F+++PKRI V     T E I            +        L  
Sbjct: 206 LFSATMPNEILELTTKFMRSPKRILVKKDELTLEGI---KQFYILIDKEYKFETLCDLYE 262

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   II+CN ++ V  L   ++++ F+V ++HG++ Q+ R  I+  F+ G+ ++++ 
Sbjct: 263 SVTITQAIIYCNTRRKVDYLTLKMQEKDFTVSSMHGDMGQKERDLIMREFRSGSTRVLIT 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   +NYIHRIGR+GR GR G A   V  +D+  + +IE
Sbjct: 323 TDLLARGIDVQQVSLVINYDLPMSPDNYIHRIGRSGRFGRKGVAINFVTHQDMDTMKSIE 382

Query: 362 KLIEKKVDWLNGDLSS 377
                +++ +  D++ 
Sbjct: 383 NYYNTQIEEMPADIAE 398


>gi|326793753|ref|YP_004311573.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326544517|gb|ADZ89737.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 425

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 169/429 (39%), Positives = 247/429 (57%), Gaps = 8/429 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ A+   GY +P+PIQ   IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFSSLGLSAPILDAIKSQGYSEPSPIQAMAIPAVLEGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R    R L+L PTRELAAQV +N   Y +N  L   ++ GG+    Q  KL
Sbjct: 61  ELLSKGEKARSNNVRALVLTPTRELAAQVHENAAAYSQNLPLRAEVVFGGVKINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DVL+ TPGR+LD F++  +    +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 RRGVDVLVATPGRLLDLFSQNAISFKQLEILVLDEADRMLDMGFIHDIKRILKLLPKERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT +D+++++++N +++   + V  P++T E I    +          +   + L
Sbjct: 181 TLLFSATFSDDIRELAQNVVKDAVEVSVTPPNTTVEVIRQSLIPVDKSKK---SAALKFL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   ++F   K     L    +K G    AIHGN  Q +R K L+ FK G I+++
Sbjct: 238 IQSRDLSQVLVFSRTKHGANRLATLFQKAGIEAAAIHGNKSQGARTKALAGFKSGEIRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV NFD+PN   +Y+HRIGRTGRAG  G+A +LV++++   +  
Sbjct: 298 VATDIAARGIDIDQLPHVVNFDLPNVPADYVHRIGRTGRAGATGEAISLVSEDEADQLSD 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLE-KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           IE LI K +  D+L G    +N   E +I        +   P  + ++  +  +++    
Sbjct: 358 IENLIRKPIPRDYLEG-FKPVNEVRETRISDKVKKPKKPKKPKSRSTSRHNNGQRSGELA 416

Query: 417 KSHIPLKES 425
           + H P  + 
Sbjct: 417 RGHKPTGQR 425


>gi|254286694|ref|ZP_04961649.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
 gi|150423278|gb|EDN15224.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
          Length = 464

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 168/392 (42%), Positives = 243/392 (61%), Gaps = 10/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C         KK   +   L
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADV---KKKPDMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 238 VKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDI 387
           IE+L +  +  +N  L+   P    P  K+D 
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNLLPESKLDT 387


>gi|119469628|ref|ZP_01612497.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7]
 gi|119446875|gb|EAW28146.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7]
          Length = 425

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 133/392 (33%), Positives = 212/392 (54%), Gaps = 2/392 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  ++P+VV  + + G+   TPIQ K +P +    D+ G AQTGTGKT +F+     
Sbjct: 10  KFSDFAIAPEVVAGLTENGFEYCTPIQAKCLPFICDGRDIAGQAQTGTGKTLAFLTATCH 69

Query: 62  IL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L +  +A  + PR LI+ PTRELA Q+  + +    + NL + L+ GG  +E Q  +LE
Sbjct: 70  RLLQSSKAPSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGEDYEKQRAQLE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+LI T GR++D + +G   +N IE++V+DEADRM D+GFI  I+ +   +P T + 
Sbjct: 130 KGVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMFDRMPDTSKR 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L    + T   +     F       E        +T +      +    +    L   L 
Sbjct: 190 LNLLFSATLSYRVQELAFEHMTN-PEHVQIEPDVKTGKRIKEELFHPSQEDKIKLLLTLI 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     I+F N K +   +   L+  G  V  + G+++Q+ R  IL+ F +G +  +V
Sbjct: 249 EEEWPDKAIVFANTKHSCETVYAWLKADGHRVGMLTGDVNQKKRQSILAQFSKGELDFLV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL IP+V HVFNFD+P+  E+Y+HRIGRTGRAG  G A +   ++   ++  I
Sbjct: 309 ATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTGRAGASGHAISFACEQYAYNLHEI 368

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           E+ IE  +   + D ++L   L K  I +  +
Sbjct: 369 EEYIEHSIPLSHYDKAALLDDLTKPIIQRKRN 400


>gi|332703129|ref|ZP_08423217.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553278|gb|EGJ50322.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 532

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 137/369 (37%), Positives = 217/369 (58%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L LS +++ A+ D G+ + +PIQ   IPLV+   DV G AQTGTGKTA+F +P+L
Sbjct: 4   LRFESLTLSKEMLKAIEDMGFEEASPIQALAIPLVMAGRDVVGQAQTGTGKTAAFGIPIL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++    R    + L+L PTRELA QVA+      K       L +  G P + Q K L
Sbjct: 64  EAVDP---RSHDLQALVLCPTRELAIQVAEELNTLAKYKLNLRVLPVYGGQPIDRQFKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  ++I TPGR++DH  RG L +  + ++V+DEAD MLDMGF   I+ I   VP  RQ
Sbjct: 121 RQGVQIVIGTPGRVMDHMERGTLKLGKVRMVVLDEADEMLDMGFREDIERILDDVPEERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+ FSATM  E+ +++E +L  P+ ++V+    T   +E  +         +        
Sbjct: 181 TIFFSATMRPEIMRLAEKYLDKPEFVKVSHKVLTVPNVEQIYYEVPRFGRLEAMCRI--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  ++F N KK V  L   L+ +G+    +HG+++Q  R ++++ F+ G+I+++
Sbjct: 238 IDFYNPKLTVVFANTKKGVDELVEHLQARGYMADGLHGDMNQAQRDRVMAKFRAGSIEIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+ D+  VFN+D+P+  E Y+HRIGRTGRAGR G+AFT  + ++   +  
Sbjct: 298 IATDVAARGIDVEDIEAVFNYDIPSDVEYYVHRIGRTGRAGRSGRAFTFASGKEFYKLRD 357

Query: 360 IEKLIEKKV 368
           I++  + K+
Sbjct: 358 IQRFTKAKI 366


>gi|319938761|ref|ZP_08013125.1| superfamily II DNA and RNA helicase [Streptococcus anginosus
           1_2_62CV]
 gi|319811811|gb|EFW08077.1| superfamily II DNA and RNA helicase [Streptococcus anginosus
           1_2_62CV]
          Length = 565

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 149/411 (36%), Positives = 236/411 (57%), Gaps = 9/411 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L  
Sbjct: 50  FNELHLSAELLAEIDKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEK 109

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +      V+    L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L  G
Sbjct: 110 INTENPIVQA---LVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALRSG 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A +++ TPGR+LD   R  L +N++E L++DEAD ML+MGF+  I+ I S VP  RQTLL
Sbjct: 167 AHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPEERQTLL 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D ++++   F++ P  +++     T E ++  ++                    
Sbjct: 227 FSATMPDAIKRIGMKFMKEPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRL---MDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++VA+
Sbjct: 284 EQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  IE 
Sbjct: 344 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQIIEN 403

Query: 363 LIEKKVDWLNGDLSSLNPPLEK---IDIAQHNHARKNNPIPQKSTGFDRRK 410
           L +K++  +    +      +K   +   + + A +N     +  G D RK
Sbjct: 404 LTKKRMKGMKPATAEEAFQAKKKVALKKIERDFADENIRNQFEKFGKDARK 454


>gi|322493239|emb|CBZ28524.1| putative DEAD box RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 389

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 189/374 (50%), Gaps = 6/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   GY +PT IQ + I   L+  DV   A +GTGKT++F + +L 
Sbjct: 18  TFEAMGLKEDLLKGMYSFGYKQPTAIQKRFIMPFLKGRDVIAQASSGTGKTSAFCVCLLQ 77

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             +      +    LIL PTRELA Q  D     G +  LT    IGG   E   ++LE 
Sbjct: 78  ACDPHTREAQA---LILSPTRELAVQTQDLCNNIGHHMGLTAYACIGGKSTEEDIRRLES 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L +N ++ LV+DEAD ML  GF   I +I  +VP  +  L
Sbjct: 135 GVHIISGTPGRVFDMIRRKSLRVNGLKTLVLDEADEMLGKGFKAQIHDIYRMVPPLQIIL 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + +    D L+   +   +    +      +     ++          K    +   L  
Sbjct: 195 VSATLPADVLEMTEKFMTEPASILVKRDEITVDSVKQY---FVSVDEEKNKFDVLMELYD 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+ + ++FCN +K V  L   + ++ F+V A+HG++ Q  R +I+  F+ G  ++++ 
Sbjct: 252 SLTIAHAVVFCNTRKKVEQLAKKMTREKFAVTAMHGDMPQAERDEIMRQFRNGHSRVLIT 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V ++D+P   E YIHRIGRTGR GR G A T V  ++++ +  IE
Sbjct: 312 TDLWARGIDVERVSLVLSYDLPLSREQYIHRIGRTGRMGRTGLAITFVRHDELRLLRDIE 371

Query: 362 KLIEKKVDWLNGDL 375
           +    +++ L  ++
Sbjct: 372 QFYATQIEELPANI 385


>gi|312377194|gb|EFR24088.1| hypothetical protein AND_11577 [Anopheles darlingi]
          Length = 415

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 112/375 (29%), Positives = 184/375 (49%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L   ++  + + G+ KP+PIQ   IP+ L   D+   A+ GTGKT ++ +P+L 
Sbjct: 12  EFEEFCLKRPLLMGIFEKGWEKPSPIQEAAIPIALVGKDILARAKNGTGKTGAYSIPVLE 71

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LI+ PTRELA Q +    +  K+ N+ V +  GG   +    ++ +
Sbjct: 72  QVDPT---KDYIQALIIVPTRELALQTSQICIELAKHMNIRVMVTTGGTNLKDDIMRIYQ 128

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGRILD  ++    M+   +LV+DEAD++L   F   + ++   +P  RQ L
Sbjct: 129 KVQVIIATPGRILDLMDKEVANMSQCRMLVLDEADKLLSQDFKGMLDHVIMRLPKERQIL 188

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F++   R           T++           ++       L S
Sbjct: 189 LFSATFPLSVKN----FMEKHLRDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFS 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+    IH  + Q  R ++  +F+ G  + +V 
Sbjct: 245 KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMQQAHRNRVFHDFRSGLCRNLVC 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  IE
Sbjct: 305 SDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIE 364

Query: 362 KLIEKKVDWLNGDLS 376
           K +  ++  +   + 
Sbjct: 365 KELGTEIKPIPKVID 379


>gi|156547575|ref|XP_001602897.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 445

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 112/375 (29%), Positives = 190/375 (50%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L  +++  + + G+ KP+PIQ  +IP+ L   DV   A+ GTGKT ++ +P+L 
Sbjct: 56  EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYSIPVLE 115

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +  + + LI+ PTRELA Q +    +  K+ ++ V +  GG        ++ +
Sbjct: 116 QVDP---KKDVIQALIIVPTRELALQTSQILIELAKHMDIKVMVTTGGTNLRDDIMRIYQ 172

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGRILD  ++    M++  ILV+DEAD++L   F   + ++ S +P  RQ L
Sbjct: 173 KVQVIIATPGRILDLMDKNVANMDHCRILVLDEADKLLSQDFKGMLDHVISRLPHERQIL 232

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    +++    F++   R           T++           ++       L S
Sbjct: 233 LYSATFPLTVKQ----FMEKHLRDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFS 288

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   +   G+    IH  + Q  R ++  +F+ G  + +V 
Sbjct: 289 KLQINQSIIFCNTTQRVELLAKKITDLGYCCYYIHAKMAQAHRNRVFHDFRAGLCRNLVC 348

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  IE
Sbjct: 349 SDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRFNLHRIE 408

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 409 QELGTEIKPIPKVID 423


>gi|319950441|ref|ZP_08024356.1| ATP-dependent DEAD-box RNA helicase DeaD [Dietzia cinnamea P4]
 gi|319435905|gb|EFV91110.1| ATP-dependent DEAD-box RNA helicase DeaD [Dietzia cinnamea P4]
          Length = 679

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 157/438 (35%), Positives = 243/438 (55%), Gaps = 10/438 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FAD+GL+P V  AV D GY  P+ IQ  TIPLVL+  DV G+AQTGTGKTA+F LP+L
Sbjct: 49  VTFADMGLAPAVAKAVRDVGYEVPSAIQAATIPLVLEGRDVVGLAQTGTGKTAAFALPIL 108

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           ++++     V+ P+ LIL PTRELA QVA+    Y         L I  G  +  Q   L
Sbjct: 109 SLIDPS---VKSPQALILAPTRELALQVAEACVTYSAGMPQVNVLPIYGGQAYGIQLSGL 165

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR++DH  +G L ++ +  LV+DEAD ML MGF   ++ I S  P + Q
Sbjct: 166 RRGAQIIVGTPGRVIDHLKKGTLDLSGLRHLVLDEADEMLAMGFQEDVERILSDTPESTQ 225

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   ++++S+ +L +P  ++V + +STA TI+  +V       +        +
Sbjct: 226 VALFSATMPSAIRRISQKYLTDPTEVKVASKTSTAPTIQQRYVLVNH---RDKLDALTRI 282

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     I+F   K     L   L  +GFS   I+G+I Q  R + +   K+G   ++
Sbjct: 283 LEVEDFDAMIMFVRTKSATEELAERLRARGFSAAPINGDIPQNLRERTIEALKDGRTDIL 342

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+P + HV N+D+P+  E+YIHRIGRTGRAGR G A   V   + + +  
Sbjct: 343 VATDVAARGLDVPRISHVVNYDIPHDTESYIHRIGRTGRAGRSGHALLFVTPRERRLLSQ 402

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+   + +  +   L S++  + ++ +A+   +   +        F R  + Y+S+ S 
Sbjct: 403 IERATRQPLTEVQ--LPSVDD-VNEMRMAKFAQSITESLDDPNIALFRRLVEEYASEHSV 459

Query: 420 IPLKESEKISKLQQDIQE 437
                +  ++   ++  E
Sbjct: 460 SMADIAAALATQSRNSDE 477


>gi|218675982|ref|YP_002394801.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
           LGP32]
 gi|218324250|emb|CAV25533.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
           LGP32]
          Length = 447

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 123/424 (29%), Positives = 204/424 (48%), Gaps = 8/424 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + K T IQ K IP+ +   D+   ++TG+GKT +FVLPM+
Sbjct: 5   LHFKDLGLDNRLLKNLKHYDFKKATEIQSKAIPVAIAGKDLLASSKTGSGKTLAFVLPMI 64

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR +IL PTRELA QV           +    L++GG  F  Q K L
Sbjct: 65  HKALKTKAFSAKDPRGVILAPTRELAKQVYGELRSMLGGLSYEATLILGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +    ++ TPGR+ DH     L ++ +E L++DEADRMLD+GF P ++ I +     R+
Sbjct: 125 RKYPRFIVATPGRLADHLEHRSLFLDGVETLILDEADRMLDLGFAPELRRIANAAKHRRR 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +              ++   S  + ++         +      +   +
Sbjct: 185 QTLMFSATLDHAEVNDIANEMLDSPKRISVGVSNEQHLDITQKFYLCDHLDHKEAILDRV 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  +IF   + +   L   L ++     A+ GN++Q  R  I+S F+    +++
Sbjct: 245 IEEAEYRQVMIFTATRADTDRLTEKLNEKKLKAVALSGNLNQTQRNAIMSQFERAVYKIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RG+DIP+V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D      
Sbjct: 305 VTTDVASRGIDIPNVSHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKR 364

Query: 360 IEKLIEKK-----VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +E  +++      ++ L G    + P   K   A+   A+K      K T     K++ S
Sbjct: 365 VELYLQQDLTFSVLEGLKGKFKGIKP--RKPAFAKGGPAKKKTNTQAKKTPKKPVKRDKS 422

Query: 415 SQKS 418
             K+
Sbjct: 423 FHKN 426


>gi|158299881|ref|XP_319893.3| AGAP009135-PA [Anopheles gambiae str. PEST]
 gi|157013731|gb|EAA14695.3| AGAP009135-PA [Anopheles gambiae str. PEST]
          Length = 430

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 112/375 (29%), Positives = 184/375 (49%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L   ++  + + G+ KP+PIQ   IP+ L   D+   A+ GTGKT ++ +P+L 
Sbjct: 41  EFEEFCLKRPLLMGIFEKGWEKPSPIQEAAIPIALVGKDILARAKNGTGKTGAYSIPVLE 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LI+ PTRELA Q +    +  K+ N+ V +  GG   +    ++ +
Sbjct: 101 QVDPT---KDYIQALIIVPTRELALQTSQICIELAKHMNIRVMVTTGGTNLKDDIMRIYQ 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGRILD  ++    M+   +LV+DEAD++L   F   + ++   +P  RQ L
Sbjct: 158 KVQVIIATPGRILDLMDKEVANMSQCRMLVLDEADKLLSQDFKGMLDHVIMRLPKERQIL 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F++   R           T++           ++       L S
Sbjct: 218 LFSATFPLSVKN----FMEKHLRDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFS 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+    IH  + Q  R ++  +F+ G  + +V 
Sbjct: 274 KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMQQAHRNRVFHDFRSGLCRNLVC 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  IE
Sbjct: 334 SDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIE 393

Query: 362 KLIEKKVDWLNGDLS 376
           K +  ++  +   + 
Sbjct: 394 KELGTEIKPIPKVID 408


>gi|157126319|ref|XP_001654592.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882564|gb|EAT46789.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 699

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 137/424 (32%), Positives = 219/424 (51%), Gaps = 12/424 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M+F   GL   ++      G+ KPT IQ + +P+ L   D+ GIAQTG+GKT +++ P  
Sbjct: 122 MEFEQGGLPDYILEEANKQGFSKPTAIQAQGMPIALSGRDMVGIAQTGSGKTLAYIAPAL 181

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                +    R   P  L+L PTRELA Q+      +G+  N     + GG P   Q + 
Sbjct: 182 VHITHQDQLRRGDGPIALVLAPTRELAQQIQQVATDFGQRINANNTCVFGGAPKGPQIRD 241

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERGA+++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 242 LERGAEIVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIMGQIRPDR 301

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQ 237
           Q L++SAT   E++ ++E FL +  +I + + + +A       V     Y K    +   
Sbjct: 302 QVLMWSATWPKEVRNLAEEFLNDYIQINIGSLNLSANHNILQIVDVCEDYEKDQKLMKLL 361

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              S +     IIF   K+ V ++  ++ + G+   +IHG+  Q+ R  +L+ F+ G   
Sbjct: 362 TEISAENETKTIIFVETKRRVDDITRNINRNGWRAVSIHGDKSQQERDYVLNAFRNGRQG 421

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    +    
Sbjct: 422 ILVATDVAARGLDVEDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTNSNANKA 481

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG---FDRRKKNYS 414
             +  ++ +    +N  L+ +  P        + H +++N    +  G      R   Y 
Sbjct: 482 GDLINVLREANQVINPKLAEMAKP------GMNRHGQRHNRYGNRYGGQQNRPPRDGGYG 535

Query: 415 SQKS 418
            Q++
Sbjct: 536 GQRN 539


>gi|117918867|ref|YP_868059.1| ATP-dependent RNA helicase RhlB [Shewanella sp. ANA-3]
 gi|189040046|sp|A0KS84|RHLB_SHESA RecName: Full=ATP-dependent RNA helicase rhlB
 gi|117611199|gb|ABK46653.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 439

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 138/430 (32%), Positives = 223/430 (51%), Gaps = 13/430 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L P+V  A+ + G+   TPIQ  ++P++LQ  D+ G AQTGTGKT +F++    
Sbjct: 10  KFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      ++  PR +I+ PTRELA Q+A +     K+ +L V ++ GG  ++ Q K
Sbjct: 70  HLLSTPVPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKHSHLKVGIVYGGESYDVQRK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+LI T GRI+D+  +G + +  I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 TLDQGVDILIGTTGRIIDYVRQGIINLGGIQAVVLDEADRMFDLGFIKDIRFLFRRMPSA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T  ++     +            +   +T ++     +    +    L  
Sbjct: 190 DQRLNMLFSATLSMKVQELAYDH-MNEPVKVEIAPEEKTSKNIKEEIFYPSQEDKMRLLL 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +D  +  I+F N K +  NL   LE  G  V  + G++ Q+ R++IL  F +G + 
Sbjct: 249 TLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDI----AQHNHARKNNPIPQKSTGFDRR 409
            AIE  I   +   N D    L  + PP++        A++   R     PQ +     R
Sbjct: 369 PAIETYINHSIPVSNYDRDALLEDIPPPVKIHRRHPAGARNLRERSGAGRPQGAHRSGGR 428

Query: 410 KKNYSSQKSH 419
              +   +  
Sbjct: 429 PPRHDRTRRQ 438


>gi|302184790|ref|ZP_07261463.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           syringae 642]
          Length = 442

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 147/374 (39%), Positives = 216/374 (57%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV ++  +Y ++  LT     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG DVL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRRGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A ++            K+ A L   
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAAASV---KQWVVTVDKKRKADLFIH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +      ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 238 LMKKHRWGQVLVFAKTRVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVDWLN 372
           AIE L  + ++   
Sbjct: 358 AIEVLTRQTLERKE 371


>gi|157374029|ref|YP_001472629.1| ATP-dependent RNA helicase SrmB [Shewanella sediminis HAW-EB3]
 gi|157316403|gb|ABV35501.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 408

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 130/387 (33%), Positives = 207/387 (53%), Gaps = 7/387 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L P ++ ++   G+ KPT IQ + IPL + + D+   A TGTGKTASF+LP L
Sbjct: 1   MQFEDLLLDPILLESLKAMGHHKPTTIQQQAIPLAMDQRDILARAPTGTGKTASFLLPAL 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L     R      + IL PTRELA+Q+           +    ++ GG+P+  Q   L
Sbjct: 61  QHLIDFPRRFSGQARILILTPTRELASQIHRYASHLASELDFNTVIITGGVPYGPQEDAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   D+L+ TPGR++++ ++G+     +E+LVIDEADRMLDMGF   ++ +       +Q
Sbjct: 121 KGNVDILVATPGRLMEYLDKGQFNAEEVEMLVIDEADRMLDMGFSAAVETLAIESVGRKQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT+ +       +       ++V   +  +E  +       A        L   +
Sbjct: 181 TMLFSATL-EGSDVGRFSHQLLTDPVKVEAEAPRSEKAKIHQWIHIADNKDHKFNLLCSI 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  K  I+F   ++ V +L   L+K G     + G+++Q+ R + L  F +G + ++
Sbjct: 240 LQQEETKRAIVFVKTREAVASLEGLLQKAGIPCSFMRGDMEQKQRFQALGRFTKGEVNVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+ D+ HV NFD+P  A+ Y+HRIGRTGRAG  G A +LV   DI+ +  
Sbjct: 300 LATDVAARGIDVDDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDIRVVGK 359

Query: 360 IEKLIEKK-----VDWLNGDLSSLNPP 381
           IE+ +++      +  L        PP
Sbjct: 360 IERYMDQPLKRRFIKDLRPKNKEAKPP 386


>gi|117646246|emb|CAL38590.1| hypothetical protein [synthetic construct]
 gi|208967637|dbj|BAG72464.1| apolipoprotein L domain containing 1 [synthetic construct]
          Length = 455

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 136/433 (31%), Positives = 218/433 (50%), Gaps = 7/433 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++  +  A    G+ KPT IQI+ IPL LQ  D+ G+A+TG GKT +F LP+L 
Sbjct: 25  TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGPGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++G            +
Sbjct: 85  ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      I    N     +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++          SK        + 
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ---YYIFIPSKFKDTYLVYIL 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI KK+         +    E++  AQ     +     +K         +    +  I
Sbjct: 379 EHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSREDAGDNDDTEGAI 438

Query: 421 PLKESEKISKLQQ 433
            ++      K+++
Sbjct: 439 GVRNKVAGGKMKK 451


>gi|75076425|sp|Q4R6M5|DDX5_MACFA RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5
 gi|67969804|dbj|BAE01250.1| unnamed protein product [Macaca fascicularis]
          Length = 614

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 135/441 (30%), Positives = 221/441 (50%), Gaps = 6/441 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 154 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 213

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 214 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAP 393

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N  L  L                  R++     K  GF+  +   +
Sbjct: 454 SDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 513

Query: 415 SQKSHIPLKESEKISKLQQDI 435
             + +  L + +  +K Q  +
Sbjct: 514 YDRGYSSLLKRDFGAKTQNGV 534


>gi|70991044|ref|XP_750371.1| ATP-dependent RNA helicase  [Aspergillus fumigatus Af293]
 gi|74669652|sp|Q4WJE9|RRP3_ASPFU RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|66848003|gb|EAL88333.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus Af293]
          Length = 472

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 140/426 (32%), Positives = 225/426 (52%), Gaps = 8/426 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+  ++  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 53  SFKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQ 112

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +          LIL PTRELA Q++ +FE  G   N+  A+++GG+   +Q+  L +
Sbjct: 113 ALMENPQSFF---GLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGK 169

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +    N     +  ++ LV+DEADR+LDM F P +  I  ++P  R+T
Sbjct: 170 KPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRT 229

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L NP R  V+  S+  +T+     +      K   +    L 
Sbjct: 230 FLFSATMSSKVESLQRASLSNPLR--VSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYLL 287

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ IIF         +   L   GF    +HG + Q +R+  L  F+  +  ++V
Sbjct: 288 NEFVGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILV 347

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V NFD+P  ++ Y+HR+GRT RAG+ G A + V + D++    I
Sbjct: 348 ATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRI 407

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  + KK+     +   +    E++  AQ     +     +K     + KK    ++S  
Sbjct: 408 EGALGKKLKEYELEKDEVMVLAERVGEAQRQAIMEMKNFDEKRGT--KAKKFGKGKRSRD 465

Query: 421 PLKESE 426
            + + E
Sbjct: 466 EMDQEE 471


>gi|229156050|ref|ZP_04284149.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 4342]
 gi|228627371|gb|EEK84099.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 4342]
          Length = 454

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 138/386 (35%), Positives = 222/386 (57%), Gaps = 11/386 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ + IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPECSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLQ 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ ++V +   T  TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMVQVQSEEVTVNTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGIAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKID 386
           EK +   +     +     P ++++D
Sbjct: 360 EKTLGAPIQREIIE----QPKIKRVD 381


>gi|195171504|ref|XP_002026545.1| GL21821 [Drosophila persimilis]
 gi|194111461|gb|EDW33504.1| GL21821 [Drosophila persimilis]
          Length = 812

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 138/414 (33%), Positives = 222/414 (53%), Gaps = 4/414 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
            F   G   +++ AV  A Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ P  M
Sbjct: 276 SFGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALAGRDIIGIAKTGSGKTAAFIWPLLM 335

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + ++       P  LIL PTREL+ Q+ +  +K+GK YN+ V    GG     Q+K L
Sbjct: 336 HLMDQRELKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSKAL 395

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+GA++++ TPGR++D        +  +  LV+DEADRM  MGF P +++I + V   RQ
Sbjct: 396 EQGAEIVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQ 455

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    +++++ + L +P RI     +   + I            K   LL  L+
Sbjct: 456 TLLFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLV 515

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +      + +IF  +K +   + ++L  +  +   +HG++DQ  R K+++ FK     ++
Sbjct: 516 KFLSEG-SVLIFVTKKADAETVANNLLVKEHNCLLLHGDMDQADRNKVITQFKRKECDIL 574

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + +V N+D+    + + HRIGRTGRAG  G AFTLV  +D +    
Sbjct: 575 VATDVAARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAFTLVTDKDKEFAGH 634

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           + + +E     +  DL  L         ++     K   + +  TG   R+ ++
Sbjct: 635 LVRNLEGADQEVPEDLMELALKSSWFRSSRFKQG-KGKKVTKTYTGLGYREPSH 687


>gi|194761692|ref|XP_001963062.1| GF15754 [Drosophila ananassae]
 gi|190616759|gb|EDV32283.1| GF15754 [Drosophila ananassae]
          Length = 460

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 109/375 (29%), Positives = 187/375 (49%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L  +++  + + G+ +P+PIQ   IP+ L   DV   A+ GTGKT ++ +P+L 
Sbjct: 60  EFEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLE 119

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + L++ PTRELA Q +    +  K+ ++ V +  GG   +    ++ +
Sbjct: 120 QIDPT---KDYIQALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQ 176

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD  ++    M++  ILV+DEAD++L + F   + ++   +P   Q L
Sbjct: 177 KVQLIIATPGRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQIL 236

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F++   R           T++           ++       L S
Sbjct: 237 LFSATFPLTVKN----FMEKHIREPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFS 292

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+    IH  + Q  R ++  +F++G  + +V 
Sbjct: 293 KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVC 352

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  IE
Sbjct: 353 SDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIE 412

Query: 362 KLIEKKVDWLNGDLS 376
           K +  ++  +   + 
Sbjct: 413 KELGTEIKPIPKVID 427


>gi|167522064|ref|XP_001745370.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776328|gb|EDQ89948.1| predicted protein [Monosiga brevicollis MX1]
          Length = 498

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 135/449 (30%), Positives = 226/449 (50%), Gaps = 19/449 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            +   GLS  ++  +    Y  PTPIQ + IP+V+   D+ GIA+TG GKT +F+LP   
Sbjct: 61  TWGQTGLSKTILAILKQLKYENPTPIQAQAIPVVMSGRDMLGIAKTGCGKTLAFLLPLLR 120

Query: 59  --MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             M                LI+ PTRELA Q+ +   K+ K+ +L V  L GG     Q 
Sbjct: 121 HVMDQRKCAQGEASPGCIGLIMSPTRELALQIYNETRKFCKHLDLRVVCLYGGSDISDQI 180

Query: 117 KKLERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
             L+  A++++CTPGR++D     +     +     + +DEADRM DMGF P +  I   
Sbjct: 181 ALLKSAAEIIVCTPGRMIDMLTVNSGRVTNLRRCTYVALDEADRMFDMGFEPQVTRILDN 240

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +   RQT++FSAT    ++ ++   L  P  + V   S  +  I+        +  +K  
Sbjct: 241 IRPDRQTVMFSATFPRAMEALARKILTKPVEVTVGGRSIVSNIIKQNV--IVMREGEKFQ 298

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L +LL       + I+F ++++   ++  +L K G+   A+HG + Q  R   L +F+ 
Sbjct: 299 KLLELLGHFFEQGSIIVFVHKQEKADSVLENLIKNGYPCLALHGAVSQEDRASNLRDFRA 358

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +++MVA+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAGR G A+T +  +D
Sbjct: 359 GNVKIMVATSIAARGLDVKQLCLVVNYDCPNHYEDYVHRCGRTGRAGREGTAYTFLTADD 418

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            K+   I + +      +  DL  L    ++  + Q    +K      +++GF  R   +
Sbjct: 419 KKYAGNIIRALHASKAQVPEDLQKL---WDQYKLEQKAAGKKVG----RTSGFSGRGYKF 471

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADS 442
           +++   +  ++ +K+  L+     +D D 
Sbjct: 472 TAE--DLIKQKQKKLLALKMHGALDDDDD 498


>gi|32474767|ref|NP_867761.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
 gi|32445306|emb|CAD75308.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
          Length = 452

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 145/414 (35%), Positives = 219/414 (52%), Gaps = 11/414 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LSP +  AV DAG+  P+PIQ   IP  L   DV G A+TGTGKTA+F +P+L 
Sbjct: 45  SFDELDLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPILE 104

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L       R P+ +++ PTRELA QVA   E+  +     +A+L GG     Q ++LE 
Sbjct: 105 QL-DSLEDCRDPQAIVIVPTRELADQVAAEAERLARGVPTEIAVLSGGKNMNRQLRQLEN 163

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ DH  RG L  NN+  +V+DEADRMLD+GF P I+ I    P  RQTL
Sbjct: 164 GTQLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRMLDIGFRPQIERIMRKCPRNRQTL 223

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+   +++++E+++  P  I+        +T              K  LL+ LL+ 
Sbjct: 224 LLSATLPPVVRRLAESYMHEPVVIDCCRDEMAVDT--IEQRYFTIAQDDKVRLLESLLKR 281

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  I    ++           + G +  AIHG++ QR R ++L   ++G ++ +VA
Sbjct: 282 EKPEQAIIFCRTKRGTDRLHRKLSHEYGSACGAIHGDLQQRERDRVLQKLRDGNLKFLVA 341

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+  RG+DI  + H+ NFDVP   ++Y+HR+GRTGR GR G A+T V   +   + +IE
Sbjct: 342 TDVVGRGIDISTISHIVNFDVPQDCDDYVHRVGRTGRMGRDGVAYTFVVPGEGDILTSIE 401

Query: 362 KLIEK-----KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           + I K     K+D                   +    R  NP+ +K     RR+
Sbjct: 402 QRINKLLIRDKMDGFESPAEKAAAVAAAAPEPEKELRRTLNPMTRKR---PRRR 452


>gi|125979227|ref|XP_001353646.1| GA19578 [Drosophila pseudoobscura pseudoobscura]
 gi|54642411|gb|EAL31160.1| GA19578 [Drosophila pseudoobscura pseudoobscura]
          Length = 812

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 138/414 (33%), Positives = 222/414 (53%), Gaps = 4/414 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
            F   G   +++ AV  A Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ P  M
Sbjct: 276 SFGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALAGRDIIGIAKTGSGKTAAFIWPLLM 335

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + ++       P  LIL PTREL+ Q+ +  +K+GK YN+ V    GG     Q+K L
Sbjct: 336 HLMDQRELKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSKAL 395

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+GA++++ TPGR++D        +  +  LV+DEADRM  MGF P +++I + V   RQ
Sbjct: 396 EQGAEIVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQ 455

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    +++++ + L +P RI     +   + I            K   LL  L+
Sbjct: 456 TLLFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLV 515

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +      + +IF  +K +   + ++L  +  +   +HG++DQ  R K+++ FK     ++
Sbjct: 516 KFLSEG-SVLIFVTKKADAETVANNLLVKEHNCLLLHGDMDQADRNKVITQFKRKECDIL 574

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + +V N+D+    + + HRIGRTGRAG  G AFTLV  +D +    
Sbjct: 575 VATDVAARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAFTLVTDKDKEFAGH 634

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           + + +E     +  DL  L         ++     K   + +  TG   R+ ++
Sbjct: 635 LVRNLEGADQEVPEDLMELALKSSWFRSSRFKQG-KGKKVTKTYTGLGYREPSH 687


>gi|212224191|ref|YP_002307427.1| DEAD/DEAH box RNA helicase [Thermococcus onnurineus NA1]
 gi|212009148|gb|ACJ16530.1| DEAD/DEAH box RNA helicase [Thermococcus onnurineus NA1]
          Length = 403

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 141/410 (34%), Positives = 218/410 (53%), Gaps = 9/410 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           M F +LGLS   + AV   G+ +PT IQ + IP +L    D+ G +QTGTGKTA+F LP+
Sbjct: 1   MSFENLGLSEATLVAVRRKGFSQPTDIQKEVIPRLLSGDADIIGQSQTGTGKTAAFALPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  +++    V+     IL PTRELA QVAD  +       + V  + GG P   Q + L
Sbjct: 61  IEAIDEKEKSVQAI---ILAPTRELALQVADEIKSLRGRKRVYVYAVYGGQPIGPQIRAL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG  V++ TPGR+LDH  RG L ++ ++  ++DEADRMLDMGFI  I+ I    P  ++
Sbjct: 118 ERGTHVVVGTPGRVLDHIRRGTLDLSKVKFFILDEADRMLDMGFIDDIEAIFRETPKKKR 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  E+ +++  ++ + + I+V++       +E  ++                 
Sbjct: 178 VLMFSATMPREILRLARRYMNDYEVIKVSSDELVPGMVEQEYIEVVPARKFSTLKKILSD 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GI+FC  K+    L   L KQG+S  A++G++ Q +R +    FK    +++
Sbjct: 238 DFY-----GIVFCATKRETRELSEKLRKQGYSAEALNGDMSQAARERTFWRFKTKRTRIL 292

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ H+ N+ +P  AE+Y+HRIGRTGR G+ GKA T +   + K +  
Sbjct: 293 VATDVAARGLDVQDISHIVNYSLPMTAEDYVHRIGRTGRMGKKGKAVTFIMPGEFKRLRY 352

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           I  +    +              E+    +     + N     S G+ RR
Sbjct: 353 IASVAGVDIQKSELSEELPREYHERYKREERPQRYRKNGRRDYSRGYSRR 402


>gi|170094690|ref|XP_001878566.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647020|gb|EDR11265.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 453

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 142/404 (35%), Positives = 218/404 (53%), Gaps = 7/404 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGL   ++ A+   GY  PT IQ++++P  L+  D+ G+A TG+GKTA+F LP+L
Sbjct: 17  VTFKSLGLIDPLLEALEQVGYKTPTDIQVESLPHALEGRDIIGVASTGSGKTAAFALPIL 76

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +    +      +L PTRELA Q++  FE  G       A+++GG+   AQ   L 
Sbjct: 77  QKLWEDPKGLFA---CVLAPTRELAYQISQQFESLGSAMGARCAVIVGGMDMPAQAIALA 133

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   +++ TPGR++ H    K     +I+ LV+DEADR+LD+ F   I  I  ++P  R 
Sbjct: 134 KRPHIVVATPGRLMQHLEETKGFSLRSIKFLVLDEADRLLDLDFGASIDKILKVIPKERT 193

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT ++ K+    L NP RIEV++   T  T+   ++       K        L
Sbjct: 194 TYLFSATMTTKVAKLQRASLSNPVRIEVSSKYQTVSTLLQYYLLMPL---KDKDAYLIYL 250

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +     + I+F     +   L   L   GF    +HG + Q  R+  L  FK G  +++
Sbjct: 251 INSLAQNSIIMFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSQRLGALGKFKSGGRRVL 310

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GK+ TLV + D++ +  
Sbjct: 311 VATDVASRGLDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVTQYDVELVQR 370

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           IE+++ KK++    D   +    E++  A    A +      KS
Sbjct: 371 IEQVVGKKMELWPTDPEEIALLKERVSEAARLAATELREQGSKS 414


>gi|93587673|ref|NP_001035277.1| probable ATP-dependent RNA helicase DDX17 isoform 4 [Mus musculus]
 gi|76364169|sp|Q501J6|DDX17_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX17; AltName:
           Full=DEAD box protein 17
 gi|63146347|gb|AAH96036.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Mus musculus]
          Length = 650

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 206/379 (54%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 214 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL++  +I V     +A       V    +  K   L+Q + +
Sbjct: 274 LMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 333

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    
Sbjct: 394 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 453

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E+    +N  L  L
Sbjct: 454 LIKVLEEANQAINPKLMQL 472


>gi|40068493|ref|NP_951062.1| probable ATP-dependent RNA helicase DDX17 isoform 1 [Mus musculus]
 gi|74181626|dbj|BAE30078.1| unnamed protein product [Mus musculus]
 gi|74220643|dbj|BAE31531.1| unnamed protein product [Mus musculus]
 gi|148672698|gb|EDL04645.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_a [Mus
           musculus]
          Length = 652

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 206/379 (54%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 214 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL++  +I V     +A       V    +  K   L+Q + +
Sbjct: 274 LMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 333

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    
Sbjct: 394 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 453

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E+    +N  L  L
Sbjct: 454 LIKVLEEANQAINPKLMQL 472


>gi|83816893|ref|NP_031866.2| probable ATP-dependent RNA helicase DDX5 [Mus musculus]
 gi|26354006|dbj|BAC40633.1| unnamed protein product [Mus musculus]
 gi|74141529|dbj|BAE38540.1| unnamed protein product [Mus musculus]
 gi|74177712|dbj|BAE38954.1| unnamed protein product [Mus musculus]
 gi|82568932|gb|AAI08370.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|120537322|gb|AAI29875.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|123243266|emb|CAM18566.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|127799027|gb|AAH62916.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|148702364|gb|EDL34311.1| mCG2872, isoform CRA_a [Mus musculus]
 gi|148702366|gb|EDL34313.1| mCG2872, isoform CRA_a [Mus musculus]
 gi|148702367|gb|EDL34314.1| mCG2872, isoform CRA_a [Mus musculus]
          Length = 615

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 135/441 (30%), Positives = 221/441 (50%), Gaps = 6/441 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 154 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 213

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 214 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N  L  L                  R++     K  GF+  +   +
Sbjct: 454 SDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 513

Query: 415 SQKSHIPLKESEKISKLQQDI 435
             + +  L + +  +K Q  +
Sbjct: 514 YDRGYSNLLKRDFGAKTQNGV 534


>gi|229150655|ref|ZP_04278869.1| ATP-dependent RNA helicase [Bacillus cereus m1550]
 gi|228632742|gb|EEK89357.1| ATP-dependent RNA helicase [Bacillus cereus m1550]
          Length = 454

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 139/410 (33%), Positives = 229/410 (55%), Gaps = 11/410 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ + IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFIM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           EK +   +     +     P ++++D       +       ++   D R+
Sbjct: 360 EKTLGAPIQREIIE----QPKIKRVDENGKPVPKPAPKKSGQNRQRDSRE 405


>gi|163789073|ref|ZP_02183517.1| possible ATP-dependent RNA helicase [Flavobacteriales bacterium
           ALC-1]
 gi|159875737|gb|EDP69797.1| possible ATP-dependent RNA helicase [Flavobacteriales bacterium
           ALC-1]
          Length = 450

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 144/452 (31%), Positives = 231/452 (51%), Gaps = 8/452 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L+  +  A+ D G+  PTPIQ ++  +V    DV GIAQTGTGKT +++LP+L
Sbjct: 1   MTFNDLNLNTPLYNALDDLGFDTPTPIQAQSFNVVASGKDVVGIAQTGTGKTLAYMLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    R   PR L+L PTREL  QV    EK+ K  N  V  + GG     Q + + 
Sbjct: 61  RNLKYS--RQDNPRVLVLVPTRELVVQVVSEIEKFSKYINNRVLGVYGGTNINTQKQAVA 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TPGR+ D      L + +I+ LVIDE D MLD+GF   + NI  ++P  RQ 
Sbjct: 119 QGQDIIVATPGRLYDLAVSRVLQLKSIQKLVIDEVDVMLDLGFRHQLMNIFDILPPRRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSATMT ++ ++  +F  NP +I +    +  E I+         Y+K   L + L  
Sbjct: 179 IMFSATMTKDVDELITDFFINPTKISIAVSGTPLENIKQIRYDVPNFYTKVNLLEELLHD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +  K  I    ++          +      C IH N  Q  R++ +  F+ G  +L+V
Sbjct: 239 TNEFSKVLIFVAYKRMADRLFDKLEDIFPGQSCVIHSNKTQNYRLRSIEQFRAGEHRLLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLDI ++ HV NFD  +  ENY+HRIGRTGRA + G+      + +    + I
Sbjct: 299 ATDVMARGLDIDNITHVINFDTTDYPENYMHRIGRTGRAEKQGRTILFSTEAEQDARERI 358

Query: 361 EKLIEKKVDWL----NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           E+L++ +++      + ++S+     E+  I +H +  K          F  +K+   +Q
Sbjct: 359 EELMQMQIETFVIPESVEISTELIEEERPQIREHYNPTKRRDEDAPGPAFHEKKEK--NQ 416

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
           K ++      +I+K  +  +     +   R  
Sbjct: 417 KENLGGSYRREIAKKYKKPKTRGDKNYNRRNK 448


>gi|74318833|ref|YP_316573.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
 gi|74058328|gb|AAZ98768.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 533

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 158/464 (34%), Positives = 243/464 (52%), Gaps = 17/464 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F++LGL P ++ +VL AGY   TP+Q + IP  L   D+   + TG+GKTA+F+LP +
Sbjct: 1   MSFSELGLDPLILKSVLAAGYENATPVQQQAIPAALSGGDLLVSSHTGSGKTAAFLLPSI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             +L +   +   PR L+L PTRELA QV      YGK       A L+GG P+  Q K+
Sbjct: 61  QRLLAEPAVKSIGPRVLVLTPTRELALQVEKAAMTYGKEMRRFRTACLVGGAPYGLQLKR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  DV++ TPGR++DH  RGK+  + +E+LV+DEADRMLDMGF+  I+ I +  P  R
Sbjct: 121 LSQPVDVVVATPGRLIDHLERGKIDFSRLEVLVLDEADRMLDMGFVDDIKAIAARCPAER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+   +  ++    ++ +RIE+         IE   +       K    L   
Sbjct: 181 QTLLFSATLDGVVGNLARELTRDAQRIEIEAVPHKEAKIEQRLLFADNMDHKNR--LLDA 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L     M   I+F + K++   +   L + GF+  A+HG++ Q  R + L   +EG  ++
Sbjct: 239 LLRDVEMVQAIVFASTKRSTEEISDLLAESGFASDALHGDMQQGQRNRALQRLREGRTRV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + HV NFD+P +AE+Y+HRIGRTGRAGR G A +     +   + 
Sbjct: 299 LVATDVAARGIDVASISHVINFDLPRQAEDYVHRIGRTGRAGRTGIAVSFAGMREGGLVK 358

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ---KSTGFDRRKKNYSS 415
            IE+    +++     L  L  P ++    +  + R     P+   +   F  R +  S 
Sbjct: 359 NIERYTGNRIEVHT--LPGLE-PTQRPSTGRPGNGRPRGNGPRGGYEKRSFGDRSEPRSY 415

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSL-----GFRG--NMPAF 452
                      +    + D + ND         G RG  ++P  
Sbjct: 416 GDRPRGDSRDNRDRGYRGDARRNDGAPARRFDNGVRGPSDVPRM 459


>gi|297579675|ref|ZP_06941602.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
 gi|297535321|gb|EFH74155.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
          Length = 464

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 168/392 (42%), Positives = 243/392 (61%), Gaps = 10/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C         KK   +   L
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADV---KKKPAMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 238 VKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDI 387
           IE+L +  +  +N  L+   P    P  K+D 
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNLLPESKLDT 387


>gi|289740539|gb|ADD19017.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
          Length = 460

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 112/375 (29%), Positives = 188/375 (50%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L  K++  + + G+ +P+PIQ   IP+ L   DV   A+ GTGKT ++ +P+L 
Sbjct: 61  EFEEFCLKRKLLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLE 120

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LI+ PTRELA Q +    +  K+ ++ V +  GG   +    +L +
Sbjct: 121 QIDPT---KDWIQALIMVPTRELALQTSQICIELAKHLDIRVMVTTGGTVLKDDILRLYQ 177

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD  ++    M++ +ILV+DEAD++L + F   + ++   +P   Q L
Sbjct: 178 KVQLIIATPGRILDLMDKKVADMSHCKILVLDEADKLLSLDFQGMLDHVILKLPKDPQIL 237

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F++   R           T++           ++       L S
Sbjct: 238 LFSATFPLTVKN----FMEKHLREPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFS 293

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+    IH  + Q  R ++  +F++G  + +V 
Sbjct: 294 KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQGHRNRVFHDFRQGLCRNLVC 353

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  IE
Sbjct: 354 SDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIE 413

Query: 362 KLIEKKVDWLNGDLS 376
           K +  ++  +   + 
Sbjct: 414 KELGTEIKPIPKVID 428


>gi|260549866|ref|ZP_05824082.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
           [Acinetobacter sp. RUH2624]
 gi|260407116|gb|EEX00593.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
           [Acinetobacter sp. RUH2624]
          Length = 486

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 139/456 (30%), Positives = 232/456 (50%), Gaps = 11/456 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA+  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP   
Sbjct: 27  TFAEFSLHETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLN 86

Query: 60  -------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                      ++    V  P  L++ PTRELA QV+ +   + ++        I G   
Sbjct: 87  NLAGQETFVPFKERMKAVTQPNILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 146

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
            A+  +  +GA V++ TPGR+LD  NR ++ ++ ++ L++DEADRMLD+GF   ++ I+ 
Sbjct: 147 FAKQIQQLKGAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEADRMLDLGFSEDLEAISE 206

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L    +QTL+FSAT  D + +++   +++P RI + T  ST   I      T     KK 
Sbjct: 207 LAANRKQTLMFSATFADRIIRLAACMMKDPMRIAIETGHSTNTDITQTLHWTDGFEHKKK 266

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                   S + +   ++F + +++   L   L + G SV A+HG + Q  R + L + +
Sbjct: 267 L--LTHWLSDENLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIR 324

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL    
Sbjct: 325 EGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYR 384

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           +   I A+E+ +E ++     +    +PP  +         R  N       G       
Sbjct: 385 ERGKIRALEEYLEARLSVSEIEGLEPSPPPARSGRDGGGRGRGGNGGRDGRRGGGFGGGR 444

Query: 413 YSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
               +S+   +E  +  + ++   +       F G 
Sbjct: 445 RFEGESNFKRREGGRDDRPRRSFDDKPRGDRPFGGE 480


>gi|255307197|ref|ZP_05351368.1| ATP-dependent RNA helicase [Clostridium difficile ATCC 43255]
          Length = 497

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 135/431 (31%), Positives = 234/431 (54%), Gaps = 11/431 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L+ K++ ++   GY  P+ +Q + IP +L+  ++   ++TG+GKTASF +P+  
Sbjct: 4   TFEKFKLNEKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLCE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +      ++    LI+ PTRELA QV D     G+   +  + + G    + Q  +L++
Sbjct: 64  NINVDYNNIQA---LIVVPTRELALQVKDEISDIGRLKKVRCSAIFGKQSIKDQIAELKQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILDH NRG + + N++ LVIDEAD+M + GF+  ++ I   +P  +   
Sbjct: 121 RVHIVVATPGRILDHINRGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVS 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCALLQQLLQ 240
           LFSAT+ +E++ + E ++ +   I +    S              + + ++  +L + L 
Sbjct: 181 LFSATIDEEIKYICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYILLKELI 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  K+ +IFCN K+ V  L + + K+GF +  +H ++ Q  R+ ++ +FK     ++V
Sbjct: 241 YSENPKSVVIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQKFNILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +SD+A+RG+ I D+  V N+DVP   ENYIHRIGRTGR G  GKA T+V ++D K+I+ I
Sbjct: 301 SSDVASRGIHIDDISLVINYDVPQDKENYIHRIGRTGRKGNSGKAITIVTEKDEKYIENI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  I  K++ L  D+        K+   +++       I +K +   +  KN S +   I
Sbjct: 361 ETYIGYKINELT-DIEQSRITHGKVLFEEYSKG-----ILKKVSKRKKVDKN-SYKSKDI 413

Query: 421 PLKESEKISKL 431
            L    ++ KL
Sbjct: 414 KLNIESEVVKL 424


>gi|17065030|gb|AAL32669.1| RNA helicase, DRH1 [Arabidopsis thaliana]
          Length = 619

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 207/379 (54%), Gaps = 2/379 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G  P+++  VL AG+  PTPIQ ++ P+ +Q  D+  IA+TG+GKT  +++P  
Sbjct: 158 MSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGF 217

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L++ R   RM P  L+L PTRELA Q+ +   K+G++  ++   L GG P   Q + L
Sbjct: 218 LHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDL 277

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGAD+++ TPGR+ D     ++ +  I  LV+DEADRMLDMGF P I+ I   +P  RQ
Sbjct: 278 ERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQ 337

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+++AT    ++K++ + L NP ++ +                       +     + +
Sbjct: 338 TLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAP-MEKQRRLEQI 396

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + +I     K + +       + F   AIHG+  Q  R  +L+ F+ G   ++
Sbjct: 397 LRSQEPGSKVIIFCSTKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVL 456

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+  V N+D PN  E+Y+HRIGRTGRAG  G+AFT    +D KH   
Sbjct: 457 VATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASD 516

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E     +   +  +
Sbjct: 517 LIKILEGANQRVPPQIREM 535


>gi|18395852|ref|NP_566141.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|16226725|gb|AAL16243.1|AF428313_1 AT3g01540/F4P13_9 [Arabidopsis thaliana]
 gi|15215694|gb|AAK91393.1| AT3g01540/F4P13_9 [Arabidopsis thaliana]
 gi|32306509|gb|AAP78938.1| At3g01540 [Arabidopsis thaliana]
 gi|332640163|gb|AEE73684.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
          Length = 618

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 207/379 (54%), Gaps = 2/379 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G  P+++  VL AG+  PTPIQ ++ P+ +Q  D+  IA+TG+GKT  +++P  
Sbjct: 158 MSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGF 217

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L++ R   RM P  L+L PTRELA Q+ +   K+G++  ++   L GG P   Q + L
Sbjct: 218 LHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDL 277

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGAD+++ TPGR+ D     ++ +  I  LV+DEADRMLDMGF P I+ I   +P  RQ
Sbjct: 278 ERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQ 337

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+++AT    ++K++ + L NP ++ +                       +     + +
Sbjct: 338 TLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAP-MEKQRRLEQI 396

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + +I     K + +       + F   AIHG+  Q  R  +L+ F+ G   ++
Sbjct: 397 LRSQEPGSKVIIFCSTKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVL 456

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+  V N+D PN  E+Y+HRIGRTGRAG  G+AFT    +D KH   
Sbjct: 457 VATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASD 516

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E     +   +  +
Sbjct: 517 LIKILEGANQRVPPQIREM 535


>gi|30678365|ref|NP_850492.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|42572223|ref|NP_974206.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|79295442|ref|NP_001030619.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|108861885|sp|Q8H136|RH14_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 14
 gi|6016713|gb|AAF01539.1|AC009325_9 RNA helicase, DRH1 [Arabidopsis thaliana]
 gi|3149952|dbj|BAA28347.1| DRH1 [Arabidopsis thaliana]
 gi|332640162|gb|AEE73683.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
 gi|332640164|gb|AEE73685.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
 gi|332640165|gb|AEE73686.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
          Length = 619

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 207/379 (54%), Gaps = 2/379 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G  P+++  VL AG+  PTPIQ ++ P+ +Q  D+  IA+TG+GKT  +++P  
Sbjct: 158 MSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGF 217

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L++ R   RM P  L+L PTRELA Q+ +   K+G++  ++   L GG P   Q + L
Sbjct: 218 LHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDL 277

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGAD+++ TPGR+ D     ++ +  I  LV+DEADRMLDMGF P I+ I   +P  RQ
Sbjct: 278 ERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQ 337

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+++AT    ++K++ + L NP ++ +                       +     + +
Sbjct: 338 TLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAP-MEKQRRLEQI 396

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + +I     K + +       + F   AIHG+  Q  R  +L+ F+ G   ++
Sbjct: 397 LRSQEPGSKVIIFCSTKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVL 456

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+  V N+D PN  E+Y+HRIGRTGRAG  G+AFT    +D KH   
Sbjct: 457 VATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASD 516

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E     +   +  +
Sbjct: 517 LIKILEGANQRVPPQIREM 535


>gi|46108284|ref|XP_381200.1| hypothetical protein FG01024.1 [Gibberella zeae PH-1]
 gi|91207410|sp|Q4IP34|PRP5_GIBZE RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
          Length = 1227

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 133/435 (30%), Positives = 212/435 (48%), Gaps = 15/435 (3%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
             +A  GL+ + +  V + GY KPTPIQ++ +P ++   DV G+A+TG+GKT +F+LPM  
Sbjct: 598  KWAQCGLTRQTLDVVDNLGYEKPTPIQMQALPALMSGRDVIGVAKTGSGKTVAFLLPMFR 657

Query: 62   ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++          P  LI+ PTRELA Q+  + + + K   L      GG P   Q  +L
Sbjct: 658  HIKDQPPLKDTDGPIGLIMTPTRELAVQIHKDCKPFLKMMGLRAVCAYGGAPIREQIAEL 717

Query: 120  ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +RGA++++CTPGR++D           +  +  +V+DEADRM DMGF P +  I + +  
Sbjct: 718  KRGAEIIVCTPGRMIDLLAANQGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIFANMRP 777

Query: 177  TRQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT+LFSATM   +     +      +           E  +   V        +   L
Sbjct: 778  DRQTILFSATMPRIIDSLTKKVLKNPIEVTVGGRSVVAKEIEQIVEVRDEPSKFHRVLEL 837

Query: 236  QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
               L  +D     +IF  +++   +L   L  +G+   +IHG  DQ  R   +S+FK+G 
Sbjct: 838  LGELYDRDEDARTLIFVERQEKADDLLKELMMKGYPCMSIHGGKDQIDRDSTISDFKKGV 897

Query: 296  IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            + +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T V  E   
Sbjct: 898  VPILIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGVAVTFVTPEQEN 957

Query: 356  HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
                I K +E+    +   L+ +           H    K+    + ++GF  +  +   
Sbjct: 958  CAPGIAKALEQSGQPIPDRLNEMRK--------AHREKVKSGKA-KDTSGFGGKGLDRLD 1008

Query: 416  QKSHIPLKESEKISK 430
            Q+         K+ K
Sbjct: 1009 QEREAARLRERKVHK 1023


>gi|320540198|ref|ZP_08039853.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
 gi|320029864|gb|EFW11888.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
          Length = 428

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 133/412 (32%), Positives = 211/412 (51%), Gaps = 10/412 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P V+ A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPLVLEALEKKGFHHCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                  K   +   PR LI+ PTRELA Q+  + E   ++  L + L  GG  ++ Q K
Sbjct: 70  YLLTHQAKQDRQTNQPRALIMAPTRELAVQIHSDAEPLTQSTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+L+ T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILVGTTGRLIDYAKQNYIDLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAV 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 DQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEDIWGHLATDGHRVGLLTGDVAQKKRLRILDDFTKGNLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            AIE      +     +    L+ L  P +++   + ++  + N  P++   
Sbjct: 369 PAIEAYTGHSIPVSKYNSDALLTDLPAP-KRLTRPRSSNGPRRNSAPRRGGA 419


>gi|255038837|ref|YP_003089458.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254951593|gb|ACT96293.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 383

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 152/375 (40%), Positives = 218/375 (58%), Gaps = 6/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F DL L   +  A+ + GY  PTPIQ K IP++L+  D+ G AQTGTGKTA+F +PM 
Sbjct: 1   MTFQDLKLIEPIKKALQEEGYTTPTPIQSKAIPVILETKDLLGCAQTGTGKTAAFAIPML 60

Query: 60  --LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L     G+      R LIL PTRELA Q+ ++F  YG+   +   ++ GG+  + Q  
Sbjct: 61  QLLHENPVGKFERSRIRALILTPTRELAIQIGESFAAYGRYTRVRHTVIFGGVGQKPQTD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +G DVLI TPGR+LD  N+G + +N +E  V+DEADRMLDMGF+  ++ +  L+P  
Sbjct: 121 ALAKGVDVLIATPGRLLDLINQGFIKLNQLEFFVLDEADRMLDMGFVHDVKKVIKLLPGK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+L FSATM   +  ++   L+NP ++EV   SSTA+TI                    
Sbjct: 181 RQSLFFSATMPPAIVTLAGTILRNPVKVEVTPVSSTADTIRQSVFFVDKSNKNSL---LL 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +++   ++F   K     +   L K G +  AIHGN  Q +R   L NFK  T +
Sbjct: 238 HILQDESIATALVFTRTKHGADKVVKVLRKAGVTSEAIHGNKSQTARQNALKNFKNQTTR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ D+ HV N+++PN  E Y+HRIGRTGRAG  G A +   KE+  ++
Sbjct: 298 VLVATDIAARGIDVDDLTHVINYEIPNIPETYVHRIGRTGRAGAKGIALSFCDKEEKPYL 357

Query: 358 DAIEKLIEKKVDWLN 372
             I KLI K +  +N
Sbjct: 358 KDIHKLIAKNIPVVN 372


>gi|229528359|ref|ZP_04417750.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|229334721|gb|EEO00207.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
          Length = 422

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 147/409 (35%), Positives = 231/409 (56%), Gaps = 11/409 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGL  +++  + + G V PTPIQ + +P VLQ  DV   AQTGTGKTA+F LP++
Sbjct: 6   ITFSQLGLDSRLLNTLSELGIVNPTPIQQQAVPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65

Query: 61  TILEKGRARVRMPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               +   +       I      PTRELA QV D+ + Y K   L +  + GG   + Q 
Sbjct: 66  QRFIEQPWQRETNSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G D+LI TPGR+LDH +   L +  +E+LV+DEADRMLDMGF+P +Q +   +  
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL FSAT   +++ V+   +++P  ++V   +STAET+       Y    K+   L 
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETV---QQIVYPVDKKRKRELL 242

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L      +  ++F   ++    L   L+  G    +I+G+  Q +R K L +FK G +
Sbjct: 243 SYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V N+D+P +AE+Y+HRIGRTGRAG  G A +L++ ++   
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQ 362

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           ++AIE+L+  ++  +WL G   S  P + + +  + +  R +     K+
Sbjct: 363 LEAIERLLNTRLPQEWLKGFEPS--PVVHEENSPRRSAGRSSEKRKLKA 409


>gi|317470864|ref|ZP_07930245.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
 gi|316901691|gb|EFV23624.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
          Length = 478

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 131/410 (31%), Positives = 214/410 (52%), Gaps = 16/410 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D GLS +++ A+   GY KPT IQ + IP +L   ++   A TG+GKTA+F +P+  
Sbjct: 4   EFQDFGLSIEILEALNGLGYKKPTNIQQEVIPPMLAGKNIVAKAPTGSGKTAAFAIPICQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +         P+ L+LEP RELA QV+      G+   L V  + GG P + Q + L++
Sbjct: 64  NVRW---EENAPQALVLEPARELAVQVSQEMFHIGRKKRLKVPAVFGGFPIDKQIRTLKQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + ++  TPGR++DH  R  L ++N++ LVIDEAD MLDMGFI  ++ I SLVP   +  
Sbjct: 121 KSHIVAGTPGRVMDHIRRETLKLSNVQWLVIDEADLMLDMGFIDEVKQILSLVPADCRIS 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  E++++++ F+     +         E         Y    ++       +  
Sbjct: 181 LFSATLKPEIRELADGFIPEAVLVMQEA---GEEQASAITEKLYFASQERKYDTFLDILM 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  ++ +IFC  ++    L   L ++      +HG+++QR R+K +  F+ G  + ++A
Sbjct: 238 DENPQSCMIFCGTREMTNVLFQKLRRKRIFCGMLHGDMEQRERLKTVDAFRRGGFRFLIA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D  ++ HV N+D P   E Y+HRIGRTGR G  G A +LV + D + +  +E
Sbjct: 298 TDVAARGIDFEEISHVVNYDFPTGKETYVHRIGRTGRNGNSGTAVSLVTENDQRMLKQVE 357

Query: 362 KLIEKKVDWLNGDLSSLNPPL---EKIDIAQHNHARKNNPIPQKSTGFDR 408
             + +       +L    PP+   EK          K    P+K    + 
Sbjct: 358 TYLGR-------ELPVTEPPVIGDEKERAFWKFQRIKAERKPEKGEALNE 400


>gi|262173166|ref|ZP_06040843.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
 gi|261890524|gb|EEY36511.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
          Length = 448

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 122/386 (31%), Positives = 188/386 (48%), Gaps = 6/386 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLSIAGRDLLASSKTGSGKTLAFVLPML 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR +IL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 61  HKSLKTKAFSAKDPRGVILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH +   L ++ +E LV+DEADRMLD+GF   ++ I +     R+
Sbjct: 121 ARDPKFIVATPGRLADHLDHRSLFLDGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D             +   +     + E  +         +      L + +
Sbjct: 181 QTLMFSATLDHADVNDIAMEMLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLERI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  IIF   + +   L   L +      A+ GN++Q  R  I+S F+    +++
Sbjct: 241 LADAEYRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQAQRNTIMSQFERVVFKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDIP V HV NFD+P   E Y+HRIGRTGRAG  G A +LV  +D      
Sbjct: 301 VTTDVASRGLDIPTVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAMSLVGPKDWDSFKR 360

Query: 360 IEKLIEKKVDW-----LNGDLSSLNP 380
           +E  +++++ +     L G    L P
Sbjct: 361 VEAFLQQEIQFEVLDGLAGKFKGLKP 386


>gi|219113631|ref|XP_002186399.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583249|gb|ACI65869.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 414

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L  +++  +   G+ KP+ IQ + I   +   D+   AQ+GTGKTA+F +  L 
Sbjct: 42  SFDAMELPEELLRGIFSYGFEKPSAIQQRAIKPTILAKDLIAQAQSGTGKTATFAIGTLA 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    ++R  + LIL PTRELA Q+       G   ++ V   +GG       + L+ 
Sbjct: 102 RLDP---KLRECQALILAPTRELAQQIQKVVLALGDYMDIQVHACVGGTAVRDDIRTLQA 158

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L +++I    +DEAD ML  GF   I +I   +P T Q  
Sbjct: 159 GVHVVVGTPGRVFDMINRRALRLDSIRQFFLDEADEMLSRGFKDQIYDIFKFLPETVQVC 218

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  ++ +V+E F++ P RI V     T E I+  +++   +  K   L       
Sbjct: 219 LFSATMPLDVLEVTERFMREPVRILVKKDELTLEGIKQFYISVDKEDWKLETLCDL--YE 276

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   II+CN ++ V  L   ++K+ F+V  +HG++DQR R  I+  F+ G+ ++++ 
Sbjct: 277 TLTITQAIIYCNTRRKVDWLQEEMQKRDFTVSCMHGDMDQRERDIIMREFRSGSSRVLIT 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P   ENYIHRIGR+GR GR G A   + + D++++  IE
Sbjct: 337 TDLLARGIDVQQVSLVINFDLPTNRENYIHRIGRSGRFGRKGVAINFLTEADVRYLRDIE 396

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++  +  D++ L
Sbjct: 397 QFYTTEITEMPSDVADL 413


>gi|209694151|ref|YP_002262079.1| ATP-dependent RNA helicase SrmB [Aliivibrio salmonicida LFI1238]
 gi|208008102|emb|CAQ78243.1| ATP-dependent RNA helicase SrmB [Aliivibrio salmonicida LFI1238]
          Length = 416

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 129/385 (33%), Positives = 204/385 (52%), Gaps = 5/385 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL LSP ++ A+ + GY +PT +Q   IP  L+  D+   A TGTGK+A+F+LP L 
Sbjct: 4   TFADLDLSPNLLRALEEIGYQRPTQVQAMAIPEALEGKDILASAPTGTGKSAAFLLPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    R   P  + IL PTRELA QVAD   +  K  +  V  + GGI ++     L 
Sbjct: 64  HLDDFPRRDPGPARVLILTPTRELAIQVADEARELAKYTHHKVFTITGGISYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R  D+++ TPGR++++    +     IE L++DEADRMLDMGF P +  ++    + +QT
Sbjct: 124 RTQDIVVATPGRLMEYIEAERFDCRAIETLILDEADRMLDMGFGPVVDRLSKECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LFSAT     +   + + L  P +I         + I   +    +   K         
Sbjct: 184 FLFSATLEGRGVDGFTADLLNEPAKIVAEPSRRERKKITQWYHRADSLPHKIE---LLKS 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F   ++ +  L   LE    S   + G + Q SR   +S F++G + ++
Sbjct: 241 ILTNQTERAIVFVKTRERLAELRGHLETAKISCAWLQGEMPQESRNNAISRFRDGKVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV NFD+P  A+ Y+HRIGRT RAG+ G A +L+   D K ++ 
Sbjct: 301 IATDVAARGIDLPDVSHVINFDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQKMMER 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           + + ++++ + +         P  K
Sbjct: 361 VGRYVKEEDEIIKERFVEGLKPTHK 385


>gi|62897439|dbj|BAD96660.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 variant [Homo
           sapiens]
          Length = 448

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 136/433 (31%), Positives = 218/433 (50%), Gaps = 7/433 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++  +  A    G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 18  TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 77

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++G            +
Sbjct: 78  ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 134

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      I    N     +  ++ LV+DEADR+L+M F   +  I  + P  R+T
Sbjct: 135 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVNPRDRKT 194

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++          SK        + 
Sbjct: 195 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ---YYIFIPSKFKDTYLVYIL 251

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 252 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 311

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 312 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 371

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI KK+         +    E++  AQ     +     +K         +    +  I
Sbjct: 372 EHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSREDAGDNDDTEGAI 431

Query: 421 PLKESEKISKLQQ 433
            ++      K+++
Sbjct: 432 GVRNKVAGGKMKK 444


>gi|25809056|gb|AAN74636.1| DEAD box RNA helicase [Pisum sativum]
          Length = 413

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 194/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    + HDV   AQ+GTGKTA+F   +L 
Sbjct: 41  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGHDVIQQAQSGTGKTATFCSGVLQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     V   + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 101 QLDYN---VTQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSS 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLHPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V KED   +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVNKEDEAMLQDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     V+ L  +++ L
Sbjct: 396 KFYNVLVEELPSNVAEL 412


>gi|319404441|emb|CBI78044.1| ATP-dependent RNA helicase [Bartonella rochalimae ATCC BAA-1498]
          Length = 415

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 153/413 (37%), Positives = 232/413 (56%), Gaps = 9/413 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  +V  +  AG  KP  IQ K IP++L+ HD+ GIAQTG+GKT +F LP+L  
Sbjct: 9   FTELGLSSILVKNLFSAGMNKPKFIQAKAIPVMLKGHDILGIAQTGSGKTLAFSLPILNR 68

Query: 63  LEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     +         IL PTRELA Q+ +      K  +L+  L++GG+    Q +++ 
Sbjct: 69  ILTLGDKRYPKTARALILVPTRELAIQIEEAISAVAKGTHLSTCLIVGGMSRLIQIRRMA 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+LI TPGR++D      + ++     ++DEADRMLDMGFI  ++ I + +    QT
Sbjct: 129 KGVDILIATPGRLMDLIRSKYVDLSQSRFFILDEADRMLDMGFISDVRQIANFLHEKCQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ E+  +++N L+ P +IEV +  +TA  I            K          
Sbjct: 189 ALFSATMSKEVNVLADNLLRKPVKIEVVSQGTTAAEITQVLYCVSTSEKKSILSKLL--- 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   + + I+F   K    ++  SL K G+SV  IHGN  Q +R   L NF+EG ++++V
Sbjct: 246 TNPALTSVIVFIRTKHGADSVARSLAKTGYSVATIHGNKSQNARQCALKNFREGLVRVLV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+DIP + HV N+D+P+ AE+Y+HRIGRTGR G  G A TL  ++ +   + A
Sbjct: 306 ATDIAARGIDIPGISHVINYDLPDNAESYVHRIGRTGRNGASGYAITLFDEKIEQVRLCA 365

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           IE+LI  K+      L    P  EK+  ++    ++      +  GF  RKK+
Sbjct: 366 IERLIRMKLKRKEIPLQ-FAPLPEKL--SEPKIYKREGSKKHRLKGFKGRKKS 415


>gi|225870075|ref|YP_002746022.1| DEAD box helicase family protein [Streptococcus equi subsp. equi
           4047]
 gi|225699479|emb|CAW93007.1| DEAD box helicase family protein [Streptococcus equi subsp. equi
           4047]
          Length = 538

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 141/373 (37%), Positives = 219/373 (58%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 1   MKFTAFNLSEDIQSAVVTAGFEKASPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      ++    L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L+
Sbjct: 61  NKIRTADNTIQA---LVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGR+LD   R  L ++++E L++DEAD  L+MGF+  I+ I S VP  RQT
Sbjct: 118 SGAHVVVGTPGRLLDLIKRKALRLDHVETLILDEADECLNMGFLEDIEAIISRVPDDRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F+++P+ ++V     T   ++  +V    Q             
Sbjct: 178 LLFSATMPAPIKEIGVKFMKDPEHVQVKNKELTNVNVDQYYVRVKEQEKFDTMTRL---M 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   + ++V
Sbjct: 235 DVQQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLTMI 354

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 355 EHLTKKRMKPLKP 367


>gi|189520693|ref|XP_001923830.1| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Danio rerio]
          Length = 671

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 132/380 (34%), Positives = 204/380 (53%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F        V+  +L   + +PT IQ +  PL L   D+ GIAQTG+GKT +++LP + 
Sbjct: 96  NFHQAQFPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIV 155

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       R   P  L+L PTRELA QV      YGK+  +    + GG P   Q + L
Sbjct: 156 HINHQPYLERGDGPICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDL 215

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 216 ERGVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 275

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+++++E+FLQ+  +I +     +A       V    +  K   L+Q + 
Sbjct: 276 TLMWSATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLME 335

Query: 240 QSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   +     IIF   KK    L   + + G+    IHG+  Q  R  +L+ F+ G   +
Sbjct: 336 EIMAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPI 395

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     +++   
Sbjct: 396 LIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQAR 455

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + +++E+    +N  L  L
Sbjct: 456 DLVRVLEEARQAINPKLLQL 475


>gi|78778139|ref|YP_394454.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251]
 gi|78498679|gb|ABB45219.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 411

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 140/419 (33%), Positives = 222/419 (52%), Gaps = 15/419 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ A+   G+ KPTPIQ + IPLVL+RHD+   AQTG+GK+ASF+LP+L
Sbjct: 1   MPFSKLGLSQNILQALKQNGFTKPTPIQERVIPLVLERHDIMAKAQTGSGKSASFILPIL 60

Query: 61  TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNK 117
            +L +     +   + L+L PTREL  Q+ + F  +G        V  +IGG     Q  
Sbjct: 61  ELLSRDSYEGKAKIKVLVLTPTRELTQQIVEAFNTFGAFMSKKPKVVGVIGGEGIGEQLF 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +++G D+L+ T GR LD  ++ ++++++++  V+DEAD+MLD GF   ++ I   +   
Sbjct: 121 NIQKGCDILVATSGRFLDILSKKQMILSHVDFFVLDEADKMLDFGFAEELELILEALGQK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT   ++  ++   +QNP  + V     T E++            +  A L +
Sbjct: 181 RQNLLFSATYPPKMLFIASKIMQNPIEVSVEDEEPTVESV---VQRAILVSRENRAPLLR 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   +  +  I+F + K+   N+     K GFS  + HG++ Q  R   L  FK   +Q
Sbjct: 238 HLLKSEKYELVIVFMSSKRAADNIAAKFRKHGFSADSFHGDLHQEDRNYTLEEFKTKKLQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ A+DL +RGLDI D+  V NFD+P  + +YIHRIGRT RAG+ G A + +  ED  H 
Sbjct: 298 ILFATDLVSRGLDINDITCVINFDLPRSSADYIHRIGRTARAGKAGMAISFIDHEDEAHF 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
             IEK    ++             +E  ++      R+    P K  G  ++ +   + 
Sbjct: 358 RLIEKRSNIRLK---------REQIEGFELTTEAPKREKGKEPIKGKGKSKKDRAREAA 407


>gi|47570033|ref|ZP_00240694.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|47553285|gb|EAL11675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
          Length = 451

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 139/386 (36%), Positives = 222/386 (57%), Gaps = 11/386 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ + IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 3   NFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 63  KIDPECSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T  TIE           +      + + 
Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQ---RVIETTDRAKPDALRFVM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 297 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGIAITFVAAKDEKHLEEI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKID 386
           EK +   +     +     P ++++D
Sbjct: 357 EKTLGAPIQREIIE----QPKIKRVD 378


>gi|323490564|ref|ZP_08095770.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
 gi|323395830|gb|EGA88670.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
          Length = 506

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 143/371 (38%), Positives = 225/371 (60%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++L +S   + +V   G+ + TPIQ  TI L ++  D+ G AQTGTGKT +F +P++
Sbjct: 2   VKFSELNISETTLKSVKRMGFEEATPIQEGTIRLGMEGKDIIGQAQTGTGKTTAFGIPLI 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    LI+ PTRELA QV++   + G++ N+ +  + GG     Q + L+
Sbjct: 62  EKIDTKDGNVQG---LIIAPTRELAIQVSEELYRLGQDKNVRILSVYGGQEISRQIRALK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH NR  L ++N+  L++DEAD ML+MGFI  IQ I + VP TRQT
Sbjct: 119 NRPQIIVGTPGRLLDHINRRTLKLDNVNTLILDEADEMLNMGFIEDIQTIMASVPDTRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D +++++E F++ P+ +++ +   T E IE           ++       L 
Sbjct: 179 LLFSATMPDAIRRIAEKFMKTPEIVKIKSKEMTVENIEQ---FYVKSVEREKFDFLSRLL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +    +  I+F   K+ V  L  +L  +G+    IHG++ Q  RM +L  FK G I ++V
Sbjct: 236 NVQQPELAIVFGRTKRRVDELAKALNIRGYLAEGIHGDLSQAKRMSVLKQFKAGKIDILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +
Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAGKKGVAVTFVTPREMGYLSIV 355

Query: 361 EKLIEKKVDWL 371
           E+  +KK++ L
Sbjct: 356 ERTTKKKMEAL 366


>gi|256421635|ref|YP_003122288.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256036543|gb|ACU60087.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 446

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 139/433 (32%), Positives = 221/433 (51%), Gaps = 8/433 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  ++ A+ D GY  PT IQ K   +V+   DVCGIAQTGTGKT +++LP L
Sbjct: 1   MTFDDLNLSRPLLNALEDLGYKTPTVIQQKVFSVVMSGQDVCGIAQTGTGKTFAYLLPCL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +  + R   P+ LIL PTREL  QV D  ++     ++ +A   GG+    Q +   
Sbjct: 61  RQFKFSKER--FPQLLILVPTRELVVQVVDAVKQLTPYMSVEIAGFYGGVNMNPQMETAS 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ TPGR++D    G L +  I+ +VIDE D ML++GF P ++ I  L+P  RQ 
Sbjct: 119 GKLDVVVATPGRLVDIVLSGTLKLKAIKRIVIDEMDEMLNLGFRPQVERILDLLPVRRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+T++++K+ +     P  +E     +  + I          Y+K   L   L +
Sbjct: 179 LLFSATITEDVEKLIQTHFNAPATVEAAPAGTPLKNISQSAYDVPNFYTKVNLLELLLAK 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  +    ++           K       IH N  Q  R   ++ FK+G+ + ++
Sbjct: 239 DSSMNKVLVFVATKEMANDLYEQLETKFPEQAGVIHSNKAQNHRFNTVNKFKDGSYRFII 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLDI +V HV +FD P   E+Y+HRIGRTGRA + G +      ++ ++ D I
Sbjct: 299 ATDIIARGLDIAEVSHVISFDTPEVPESYMHRIGRTGRADKEGHSILFTKPQEKENKDNI 358

Query: 361 EKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           E+L+  ++  L       +S +    EK  +   N   K     +    F    K+  ++
Sbjct: 359 EELMNYQIPVLPLPEELVISDVLTEDEKPQVKMKNFLIKLPSREEAGPAFHE--KSAKNK 416

Query: 417 KSHIPLKESEKIS 429
           K ++ ++ ++K+ 
Sbjct: 417 KVNVKIRHADKMK 429


>gi|168038086|ref|XP_001771533.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677260|gb|EDQ63733.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 684

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 133/379 (35%), Positives = 209/379 (55%), Gaps = 2/379 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  +G  P ++  +  AG+  PTPIQ ++ P+ +Q  D+  IA+TG+GKT  +++P  
Sbjct: 150 MSFEAVGFPPDMLRELQIAGFKSPTPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPAF 209

Query: 61  TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             LE+ R   R  P  L+L PTRELA Q+ D   K+G++  +T   + GG P   Q + +
Sbjct: 210 LHLERHRNNSRLGPTVLVLAPTRELATQIQDECVKFGRSSRITSTCVYGGAPKVPQLRDI 269

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGAD++I TPGR+ D     ++ +  +  LV+DEADRMLDMGF P I+ I + +P  RQ
Sbjct: 270 ERGADIVIATPGRLNDFLEVKRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVNEIPSRRQ 329

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+++AT   E++K++ + L NP ++ +      A               +      + +
Sbjct: 330 TLMYTATWPKEVRKIAGDLLINPVQVNIGNTDELAANKSITQNVEVVVPYE-KQRRLEQI 388

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + II     K + +       + F   AIHG+  Q  R  +LS F+ G   ++
Sbjct: 389 LRSQEPGSKIIIFCSTKRMCDTLSRNLGRDFGAAAIHGDKSQSERDFVLSQFRTGRTPIL 448

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G A+T  +++D K+   
Sbjct: 449 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFSEQDGKYAKE 508

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E     +  +L  +
Sbjct: 509 LIKVLEGANQKVPPELKDI 527


>gi|225444867|ref|XP_002281219.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297738640|emb|CBI27885.3| unnamed protein product [Vitis vinifera]
          Length = 413

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 194/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  SFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G       + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 101 QLDYGLVE---CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSS 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V ++D + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ L  +++ L
Sbjct: 396 RFYNVVIEELPSNVADL 412


>gi|77460208|ref|YP_349715.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1]
 gi|77384211|gb|ABA75724.1| cold-shock dead-box protein A [Pseudomonas fluorescens Pf0-1]
          Length = 557

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 148/386 (38%), Positives = 234/386 (60%), Gaps = 9/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++  +     P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPSKRE---PQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLQTVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++PK +++ + + T   IE   +  +A       L       
Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLL---E 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I+F   K+  ++L  +L+ +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALDAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKI 385
           ++  +KV    L    + L+  ++K+
Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKL 387


>gi|320178071|gb|EFW53051.1| ATP-dependent RNA helicase RhlB [Shigella boydii ATCC 9905]
          Length = 421

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 136/413 (32%), Positives = 206/413 (49%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV ++   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVVESLEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PT ELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRKVNQPRALIMAPTHELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGAPRNRRRSG 421


>gi|255642429|gb|ACU21478.1| unknown [Glycine max]
          Length = 413

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 193/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ +P+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  SFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G   +   + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 101 QLDYG---LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G   ++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHTVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +     +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V  +D + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTADDSRMLSDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     V+ L  +++ L
Sbjct: 396 KFYNVTVEELPSNVADL 412


>gi|298529095|ref|ZP_07016498.1| DEAD/DEAH box helicase domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510531|gb|EFI34434.1| DEAD/DEAH box helicase domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 367

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 135/370 (36%), Positives = 214/370 (57%), Gaps = 6/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F D  L  ++   +   GY  PT IQ + IP+ LQ  DV G+AQTGTGKTA+FV+P L
Sbjct: 1   MNFTDFELDHRIQAGIKACGYKNPTAIQEQAIPVGLQGRDVMGLAQTGTGKTAAFVVPAL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +G  +   PR L+L PTRELA Q  + F   G+   L    + GG+    Q +K+ 
Sbjct: 61  QRLLQG--KRGKPRVLVLSPTRELAEQTHEFFTALGRKTGLRCVSVYGGVSRSGQVQKIR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G ++++  PGR+LD      + ++ +E L++DE+DRMLDMGF+P I++I  ++P  RQ 
Sbjct: 119 SGVEIVVACPGRLLDLARDRAVNLSQVETLILDESDRMLDMGFMPDIRSIMKMLPPKRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++ +++  L +P R++VN   +     +  +       ++    L +   
Sbjct: 179 MLFSATMPADIRTLADEILDDPARVQVNHERALDSISQCLYPVKRRPKAEMLIELLR--- 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      ++F   K     +   L + GF    + GN+ Q +R +++ +FK G+  ++V
Sbjct: 236 -EKQDGATLVFTRTKHMATRIAKRLSQAGFRARDLQGNMSQNNRQRVMKDFKRGSFNILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RG+D+  +GHV NFD+P+ AE+Y HRIGRTGRA   G A T V  +D   I AI
Sbjct: 295 ATDIASRGIDVAGIGHVVNFDMPDTAESYTHRIGRTGRADSCGDASTFVEPKDFGLIRAI 354

Query: 361 EKLIEKKVDW 370
           E+L  +K+  
Sbjct: 355 ERLQSQKLQR 364


>gi|228469533|ref|ZP_04054526.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           uenonis 60-3]
 gi|228308883|gb|EEK17558.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           uenonis 60-3]
          Length = 436

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 138/431 (32%), Positives = 226/431 (52%), Gaps = 8/431 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF +L L  +V+  +    +V+ +PIQ +TIP +L+  DV G AQTG+GKTA+++LP L
Sbjct: 1   MDFYELDLEDEVLDGLDAMNFVETSPIQSETIPPLLEGRDVIGCAQTGSGKTAAYLLPFL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + +          +++ PTRELA Q+    E +G   +++   + GG    A  ++  
Sbjct: 61  NKVARQELPKEHLGAVVMAPTRELAKQIDQEVEGFGYYVSVSTLAIYGGTDGIAWEQQRR 120

Query: 121 RGA---DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             A   D++I TPGR+L     G   +++++  V+DEADRMLDMGF   I  I   +P  
Sbjct: 121 GMALGADIVIATPGRLLSMLRLGACDLSHVQYFVLDEADRMLDMGFYEDIMEIYKALPED 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSATM  E+ K+SE+ L +P  +E+         ++  ++   AQ  K   +   
Sbjct: 181 CQHVMFSATMPKEILKLSESILVDPVLVELAVAKPPKSIMQTAYICYDAQ--KLPIIRSL 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               +  +   IIF   K  V  L  +L + G  V  +H ++ Q  R ++L +F+ G I+
Sbjct: 239 FANPESEVSRTIIFAGTKATVHALAQTLTRDGLPVAEMHSDLSQERREEVLRDFRMGRIK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKH 356
           ++VA+D+ ARG+DI D+  V N++VP+  E+Y+HRIGRT R A   G A TLV+  D + 
Sbjct: 299 VLVATDIVARGIDIDDIAVVINYEVPHDFEDYVHRIGRTARGADGKGLAITLVSPSDQQD 358

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH--ARKNNPIPQKSTGFDRRKKNYS 414
              +E+ +E+++  +  D S    P    +   H+   +R       +S G  R K    
Sbjct: 359 FARLEQFLEQEIYRIPLDPSLGEAPTYAPNERTHSRGSSRGKGNGRGRSQGKGRGKSQGK 418

Query: 415 SQKSHIPLKES 425
            + S    + S
Sbjct: 419 GRSSQRKGRSS 429


>gi|194894625|ref|XP_001978097.1| GG17877 [Drosophila erecta]
 gi|190649746|gb|EDV47024.1| GG17877 [Drosophila erecta]
          Length = 1222

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 138/447 (30%), Positives = 230/447 (51%), Gaps = 12/447 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 510 TWAQCGVSKKEMDVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 569

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +           +I+ PTREL  Q+  +  K+ K+  L    + GG     Q  +L
Sbjct: 570 HILDQPSLEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAEL 629

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 630 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRP 689

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   L+ P  + V   S   +               K   L 
Sbjct: 690 DRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKD--VEQNVVILNDDAKFFKLL 747

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +FK G +
Sbjct: 748 ELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKV 807

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  E  ++
Sbjct: 808 RLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRY 867

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-----KK 411
              I + ++     +  +L +L    + +  A+            K   FD +     K+
Sbjct: 868 AGDIIRALDLSGTLIPSELQTLWTEYKVLQEAEGKTVHTGGGFSGKGFKFDEQEFNAVKE 927

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQEN 438
           +   QK+ + L +S+    ++QDI + 
Sbjct: 928 SKKLQKAALGLADSDDEEDIEQDIDQQ 954


>gi|71736956|ref|YP_273717.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|289647906|ref|ZP_06479249.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298488177|ref|ZP_07006214.1| ATP-dependent RNA helicase SrmB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71557509|gb|AAZ36720.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157456|gb|EFH98539.1| ATP-dependent RNA helicase SrmB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330869381|gb|EGH04090.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330988677|gb|EGH86780.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331010277|gb|EGH90333.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 445

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 138/437 (31%), Positives = 213/437 (48%), Gaps = 15/437 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 2   FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L          R +IL PTRELA Q     E++ +   +   L+ GG  F+ Q   L + 
Sbjct: 62  LIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI TPGR+L+  N G L + ++E+LV+DEADRMLDMGF   ++ +        QT+L
Sbjct: 122 PDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTML 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT T                  +   S +            A ++     +   L + 
Sbjct: 182 FSAT-TGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLAN 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T +  IIF N K     L   L    +    +HG+ DQ+ R   +   K+G  ++MVA+
Sbjct: 241 ETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVAT 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  +  V NFD+P   ++Y+HR+GRTGRAG  G A +L+   D   + ++E+
Sbjct: 301 DVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVER 360

Query: 363 LIEKK-----VDWLNGDLSSLNPPLEKIDI---------AQHNHARKNNPIPQKSTGFDR 408
            +++      +  + G                       A+ +  +     P K    +R
Sbjct: 361 YLKQSFERRVIKEVKGTYGGPKKVKASGKAVGVKKKKTDAKGDKKKTAAKGPTKRKTVNR 420

Query: 409 RKKNYSSQKSHIPLKES 425
            K +  SQ    PLK+ 
Sbjct: 421 PKSDLVSQDGMAPLKKR 437


>gi|1170509|sp|P41378|IF4A_WHEAT RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A
          Length = 414

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 195/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 42  SFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G       + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 102 QLDYGLVE---CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS 158

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 159 GVHVVVGTPGRVFDIVRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVG 218

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 219 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDL--YE 276

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 277 TLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY HRIGR+GR GR G A   V +ED + +  I+
Sbjct: 337 TDLLARGIDVQQVSLVINYDLPTQPENYQHRIGRSGRFGRKGVAINFVTREDERMLFDIQ 396

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     ++ L  +++ L
Sbjct: 397 KFYNVVIEELPANVADL 413


>gi|116191655|ref|XP_001221640.1| hypothetical protein CHGG_05545 [Chaetomium globosum CBS 148.51]
 gi|118575171|sp|Q2H720|DBP2_CHAGB RecName: Full=ATP-dependent RNA helicase DBP2
 gi|88181458|gb|EAQ88926.1| hypothetical protein CHGG_05545 [Chaetomium globosum CBS 148.51]
          Length = 562

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 127/382 (33%), Positives = 206/382 (53%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 137 TFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 196

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 197 HINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGPQTRDL 256

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 257 SRGVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 316

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV---ATYAQYSKKCALLQ 236
           T ++SAT   E++ ++ +FL +  ++ + +    A       V       +  K    L+
Sbjct: 317 TCMWSATWPKEVRALASDFLTDFIQVNIGSMDLAANHRITQVVEVVNESEKRDKMIKHLE 376

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++++ +++    +IF   K+    +   L + G+   +IHG+  Q  R  +L  FK G  
Sbjct: 377 KIMEDKESQNKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKS 436

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +MVA+D+A+RG+D+ ++ HV N+D PN +E+YIHRIGRTGRAG  G A T    ++ K 
Sbjct: 437 PIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSKQ 496

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
              +  ++++    ++  L+ +
Sbjct: 497 ARDLVGVLQEAKQHIDPRLAEM 518


>gi|332231227|ref|XP_003264799.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Nomascus
           leucogenys]
          Length = 644

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 206/379 (54%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 86  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 145

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 146 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 205

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 206 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 265

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL++  +I V     +A       V    +  K   L+Q + +
Sbjct: 266 LMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 325

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 326 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 385

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    
Sbjct: 386 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 445

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E+    +N  L  L
Sbjct: 446 LIKVLEEANQAINPKLMQL 464


>gi|86748916|ref|YP_485412.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
 gi|86571944|gb|ABD06501.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
          Length = 491

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 165/475 (34%), Positives = 246/475 (51%), Gaps = 24/475 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL+  +  A+ +  Y  PTPIQ +TIPL L   DV GIAQTGTGKTASF LP+L 
Sbjct: 9   SFQDFGLADPISRALQEENYTVPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILH 68

Query: 62  ILEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            + + R + +     +L   PTREL+ Q+ D+F  YG++  L+  L IGG+P   Q + L
Sbjct: 69  RILENRIKPQPKTCRVLVLSPTRELSGQILDSFNAYGRHIRLSATLAIGGVPMGRQVRSL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G +VL+ TPGR+LD      L +  +E LV+DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 129 MQGVEVLVATPGRLLDLVQSNALRLGQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM  ++  ++E  L++P R+ V   +ST E I    +            +   +
Sbjct: 189 TLFFSATMPKDIADLAEQMLRDPARVAVTPVASTVERINQRVIHLDHSAK---PAMLATI 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             QD +   ++F   K     +   L++ G +  AIHGN  Q  R ++L+ F+ G ++ +
Sbjct: 246 LQQDGVNQALVFTRTKHGADKVVKGLQRAGITADAIHGNKSQNYRERVLAAFRTGELRTL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           VA+D+AARG+D+  V HV NFD+PN  E Y+HRIGRT RAG  G A +L A  E+  ++ 
Sbjct: 306 VATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGAEGTAISLCAGGEETGYLR 365

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPL------------EKIDIAQHNHARKNNPIPQKSTGF 406
            IEKLI   +   +       P              ++ +  Q +  ++N   P  + G 
Sbjct: 366 DIEKLIRIALPKEDHRTPGAKPAPSTAPQRGGQRNGQQRNGQQRSGGQRNGAAPHAARGD 425

Query: 407 DRRKKNYSSQKSHI----PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
                N   +          +  +          ++   + G +G   AF+  KN
Sbjct: 426 AAPGSNDPRRPRRAGGPNAGRNPDAARHEPAVRPQHGGQAEGLQG--VAFLQRKN 478


>gi|330977878|gb|EGH77781.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 445

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 137/437 (31%), Positives = 213/437 (48%), Gaps = 15/437 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 2   FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L          R +IL PTRELA Q     E++ +   +   L+ GG  F+ Q   L + 
Sbjct: 62  LIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI TPGR+L+  N G L + ++E+LV+DEADRMLDMGF   ++ +        QT+L
Sbjct: 122 PDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTML 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT T                  +   S +            A ++     +   L + 
Sbjct: 182 FSAT-TGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLAN 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T +  IIF N +     L   L    +    +HG+ DQ+ R   +   K+G  ++MVA+
Sbjct: 241 ETYQKAIIFTNTRAMADRLYCRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVAT 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  +  V NFD+P   ++Y+HR+GRTGRAG  G A +L+   D   + ++E+
Sbjct: 301 DVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVER 360

Query: 363 LIEKK-----VDWLNGDLSSLNPPLEKIDI---------AQHNHARKNNPIPQKSTGFDR 408
            +++      +  + G                       A+ +  +     P K    +R
Sbjct: 361 YLKQSFERRVIKEVKGTYGGPKKVKASGKAVGVKKKKTDAKGDKKKVAAKGPTKRKTVNR 420

Query: 409 RKKNYSSQKSHIPLKES 425
            K +  SQ    PLK+ 
Sbjct: 421 PKSDLVSQDGMAPLKKR 437


>gi|299532061|ref|ZP_07045456.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44]
 gi|298719976|gb|EFI60938.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44]
          Length = 464

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 157/376 (41%), Positives = 220/376 (58%), Gaps = 8/376 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
             +  AV D GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L  L +    
Sbjct: 3   EPLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRHENA 62

Query: 70  VRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
              P        +L PTRELA QVA     Y K+  L   ++ GG+  + Q  +L++G +
Sbjct: 63  SASPARHPVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKPQTIELKKGVE 122

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           VL+ TPGR+LDH     +++N +E +V+DEADRMLD+GF+P +Q I S +P +R TLLFS
Sbjct: 123 VLVATPGRLLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKSRTTLLFS 182

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT + E+++++ ++LQ+P  IEV  P+   ET        Y           + +  +  
Sbjct: 183 ATFSPEIKRLAGSYLQDPVTIEVARPN---ETASTVEQRFYKVTDDDKRYAIRSVLKERD 239

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
           ++   IF N K     L  +LE+ G    A+HG+  Q  R+K L  FK G + L+V +D+
Sbjct: 240 IRQAFIFSNSKLGCARLTRALERDGLRAAALHGDKSQDERLKALEAFKAGEVDLLVCTDV 299

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           AARGLDI DV  VFN+DVP  AE+Y+HRIGRTGRAG  G A TLV   D +++  IEKL 
Sbjct: 300 AARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTDHDSRNVADIEKLT 359

Query: 365 EKKVDWLNGDLSSLNP 380
           +KK++     +    P
Sbjct: 360 KKKIEVEPAPMLDFRP 375


>gi|120436503|ref|YP_862189.1| ATP-dependent RNA helicase [Gramella forsetii KT0803]
 gi|117578653|emb|CAL67122.1| RhlE-like DEAD box family ATP-dependent RNA helicase [Gramella
           forsetii KT0803]
          Length = 455

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 142/448 (31%), Positives = 237/448 (52%), Gaps = 16/448 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL L+  +  A+ D  +  PTPIQ +    ++   DV GIAQTGTGKT +++LP+L
Sbjct: 9   LSFQDLNLNTPLRNALEDLNFQTPTPIQEQAFSSIMSGRDVVGIAQTGTGKTFAYLLPLL 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+    +   PR LI+ PTREL  QV +  EK  K  NL VA + GG+    Q++ L 
Sbjct: 69  RMLKYSEQK--NPRILIMVPTRELVVQVVEEIEKLAKYINLRVAGVYGGVNINTQHQDLM 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TP R+ D   R  + + +I+  VIDE D MLD+GF   + NI  L+P  RQ+
Sbjct: 127 QGLDIVVATPRRLYDLVLRRAVQLKSIQKFVIDEVDVMLDLGFKFQVNNIIELLPKNRQS 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSATMT+ ++++ +   + P++I V    +  E I+         Y+K   L   L  
Sbjct: 187 IMFSATMTETVEEMIDTNFKAPEKISVAVSGTPLENIDQRGYKIPNFYTKANLLKHLLAD 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   K  I   +++       +  E+       +H    Q  R+K + +F EG  ++++
Sbjct: 247 TETYQKVLIFIGDKRIADRLYENLGEEFPGDTSLVHTGKSQNYRLKSVGDFDEGLSRILI 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLDI +V HV NFD P   ENY+HRIGRTGRA + G++     + + +++DAI
Sbjct: 307 ATDVMARGLDIENVSHVVNFDTPQYPENYMHRIGRTGRAEKKGQSLLFTTEAEQEYLDAI 366

Query: 361 EKLIEKKVDWL----NGDLSSLNPPLEKIDIAQ----HNHARKNNPIPQKSTGFDRR--- 409
           E+L++ +V         ++++   P EK    +    HN   +  P   +    +++   
Sbjct: 367 EELMQTEVPKYDLPEEVEIATELIPEEKPRAIEINNPHNVTEEAGPAFHEKKDKNKKVNL 426

Query: 410 ---KKNYSSQKSHIPLKESEKISKLQQD 434
               +   +QK   P    +K +  ++ 
Sbjct: 427 GGSYRREIAQKYKKPKTRGDKNANRRRK 454


>gi|194763447|ref|XP_001963844.1| GF21236 [Drosophila ananassae]
 gi|190618769|gb|EDV34293.1| GF21236 [Drosophila ananassae]
          Length = 1211

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 138/447 (30%), Positives = 230/447 (51%), Gaps = 12/447 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 505 TWAQCGVSKKEMDVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 564

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +           +I+ PTREL  Q+  +  K+ K+  L    + GG     Q  +L
Sbjct: 565 HILDQPSLEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAEL 624

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RG+++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 625 KRGSEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRP 684

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   L+ P  + V   S   +               K   L 
Sbjct: 685 DRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKD--VEQHVVILNDDAKFFKLL 742

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +FK G +
Sbjct: 743 ELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKV 802

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G+AFT +  E  ++
Sbjct: 803 RLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGQAFTFITPEQSRY 862

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-----KK 411
              I + ++     +  +L +L    +    A+            K   FD +     K+
Sbjct: 863 AGDIIRALDLSGTLIPAELQTLWTEYKTAQEAEGKTVHTGGGFSGKGFKFDEQEFNAVKE 922

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQEN 438
           +   QK+ + L +S+    ++QDI + 
Sbjct: 923 SKKLQKAALGLADSDDEEDIEQDIDQQ 949


>gi|320534382|ref|ZP_08034868.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133424|gb|EFW25886.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 861

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 144/412 (34%), Positives = 227/412 (55%), Gaps = 19/412 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ AV D G+V PT IQ + IP++L   DV G+AQTGTGKTA+F LP+L
Sbjct: 161 ITFTDLGLPRDLLKAVTDMGFVTPTAIQKEAIPVLLAGRDVVGVAQTGTGKTAAFGLPLL 220

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++    R  + + L+L PTRELA Q A+              + +  G P+  Q   L
Sbjct: 221 DAVDS---RDSVVQALVLAPTRELALQSAEAITDMAARSRGLDVVAVYGGAPYGPQIGAL 277

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA V++ TPGR++D  ++G L ++++   V+DEAD ML MGF   ++ I   +P  R+
Sbjct: 278 KGGAQVVVGTPGRVIDLIDKGALQLDDVRYFVLDEADEMLRMGFAEDVETIAQSLPTDRR 337

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM   +Q V+   L  P ++EV+ P+ST  T+   +        +        +
Sbjct: 338 TALFSATMPPAIQAVARQHLHEPVQVEVSRPASTVATVHQTYAVVPF---RHKIGAVSRV 394

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  I+F   K    ++   L  +G    AI G++ QR R +++   + GT+ ++
Sbjct: 395 LAVTDAEAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVL 454

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +G V NFDVP  AE Y+HRIGRTGRAGRHG+A T +  ++   +  
Sbjct: 455 VATDVAARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQ 514

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           IE+L   +++ +     +L  P    D+++H    +   +  K+     R +
Sbjct: 515 IERLTGSRLEEI-----TLPSPA---DVSEH----RARKLLSKAAARHERGR 554


>gi|289619969|emb|CBI53413.1| unnamed protein product [Sordaria macrospora]
          Length = 602

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 130/382 (34%), Positives = 209/382 (54%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 172 TFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 231

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 232 HINAQPLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQIRDL 291

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 292 SRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 351

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ-- 237
           TL++SAT   E++ ++ +FL N  ++ + +    A       V   ++  K+  +++   
Sbjct: 352 TLMWSATWPKEVRNLASDFLTNFIQVNIGSMDLAANHRITQIVEVVSESEKRDRMIKHLE 411

Query: 238 -LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +++ ++     +IF   K+   ++   L + G+   +IHG+  Q  R  +L  FK G  
Sbjct: 412 KIMEGRENTNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKS 471

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +MVA+D+A+RG+D+ ++ HV N+D PN +E+YIHRIGRTGRAG  G A T    ++ K 
Sbjct: 472 PIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSKQ 531

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
              +  ++++    ++  L+ +
Sbjct: 532 ARELVGVLQEAKQQIDPRLAEM 553


>gi|25809054|gb|AAN74635.1| DEAD box RNA helicase [Pisum sativum]
 gi|40950574|gb|AAR97917.1| DEAD box RNA helicase [Pisum sativum]
          Length = 413

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 194/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     V   + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 101 QLDYS---VTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSS 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V K+D + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLGDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     ++ L  +++ L
Sbjct: 396 KFYNVLIEELPSNVAEL 412


>gi|256422981|ref|YP_003123634.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256037889|gb|ACU61433.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 444

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 144/371 (38%), Positives = 223/371 (60%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L  +V+  +   GY   TP+Q K IP ++   D+   AQTGTGKTA+F+LP+L
Sbjct: 1   MYFDEFDLDDRVLDGIDAMGYTTATPVQEKVIPPIIAGKDILACAQTGTGKTAAFLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
             L       R   +LI+ PTRELA Q+A   E      +++   + GG     F A+ K
Sbjct: 61  HRLITEPHDARKINSLIIVPTRELAVQIAQTLEGMSYFTSVSSIAVYGGSNGALFAAEKK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D++ICTPGR++ H N G + ++ ++ LV+DEADRMLDMGF   I  ITS +P  
Sbjct: 121 ALTSGVDIVICTPGRMIAHLNMGYVKLDAVKYLVLDEADRMLDMGFSDDIIRITSTLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSATM D+++K++   L  P+ I +      ++  E      +  + ++   L +
Sbjct: 181 RQNLLFSATMPDKIRKLALKILHQPEEINIA----ISKPPEKIVQEAFVVFEEQKTGLIK 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L ++      IIFC++K+NV  L + L+K  FSV  IH +++Q  R ++L +FK   ++
Sbjct: 237 QLLARKEFGCIIIFCSRKQNVKQLTYELKKARFSVEEIHSDLEQDKREQVLMDFKNKKLK 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ +RG+DI D+  V N+DVPN AE+YIHRIGRT RA   G A+T++++++ +  
Sbjct: 297 MLVATDILSRGIDIEDIDLVINYDVPNDAEDYIHRIGRTARAATDGTAYTIISEKEQRKF 356

Query: 358 DAIEKLIEKKV 368
             IE+++ K V
Sbjct: 357 ARIEEVLGKPV 367


>gi|66550432|ref|XP_395653.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
           [Apis mellifera]
          Length = 452

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 142/413 (34%), Positives = 229/413 (55%), Gaps = 7/413 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLG+   +  A  D  +  PT IQ + IPL L+  D+ G+A+TG+GKTA+F LP+L
Sbjct: 18  ITWKDLGIVDVLCKACEDLKWKSPTKIQYEAIPLALEGKDIIGLAETGSGKTAAFALPIL 77

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      LIL PTRELA Q+++ FE  G +  +  A+++GG+   +Q   L 
Sbjct: 78  QALLENPQRYFA---LILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALILA 134

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   +LI TPGR++DH    K     +++ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 135 KKPHILIATPGRLVDHLENTKGFSLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERK 194

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATMT ++QK+    L+NP ++EV+T   T E ++  ++       K   +    +
Sbjct: 195 TLLFSATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPV---KFKDVYLVHI 251

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + +IFC    N V     L   GF+   +HG + Q  R+  L+ FK     ++
Sbjct: 252 LNELAGNSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSIL 311

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR G++ T V + D++    
Sbjct: 312 ISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQR 371

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           IE+LI K++         +    E++  A+     +   I        R+K+ 
Sbjct: 372 IEQLISKQLPLYATQEEEVMVLEERVAEARRIVKMEMKDIEDSKKVGKRKKRQ 424


>gi|329945603|ref|ZP_08293336.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528606|gb|EGF55571.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 852

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 145/412 (35%), Positives = 228/412 (55%), Gaps = 19/412 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   ++ AV D G+V PT IQ + IP++L   DV G+AQTGTGKTA+F LP+L
Sbjct: 147 ITFADLGLPSDLLKAVTDMGFVSPTAIQKEAIPVLLSGRDVVGVAQTGTGKTAAFGLPLL 206

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++    R  + + L+L PTRELA Q A+              + +  G P+  Q   L
Sbjct: 207 DAVDS---RDSVVQALVLAPTRELALQSAEAITDMAARSRGLDVVAVYGGAPYGPQIGAL 263

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA V++ TPGR++D  ++G L ++++   V+DEAD ML MGF   ++ I   +P  R+
Sbjct: 264 KGGAQVVVGTPGRVIDLIDKGALQLDDVRYFVLDEADEMLRMGFAEDVETIAESLPTERR 323

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM   +Q V+   L  P ++EV+ P+ST  T+   +        +        +
Sbjct: 324 TALFSATMPPAIQAVARQHLHEPVQVEVSRPASTVATVHQTYAVVPF---RHKIGAVSRV 380

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  I+F   K    ++   L  +G    AI G++ QR R +++   + GT+ ++
Sbjct: 381 LAVTDAEAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVL 440

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +G V NFDVP  AE Y+HRIGRTGRAGRHG+A T +  ++   +  
Sbjct: 441 VATDVAARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQ 500

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           IE+L   +++ +     +L  P    D+++H    +   +  K+     R +
Sbjct: 501 IERLTGSRLEEI-----TLPSPA---DVSEH----RARKLLSKAAARHERGR 540


>gi|327538177|gb|EGF24861.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
           baltica WH47]
          Length = 449

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 145/414 (35%), Positives = 218/414 (52%), Gaps = 11/414 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LSP +  AV DAG+  P+PIQ   IP  L   DV G A+TGTGKTA+F +P+L 
Sbjct: 42  SFDELDLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPILE 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L       R P+ +++ PTRELA QVA   E+        +A+L GG     Q ++LE 
Sbjct: 102 QL-DSLEDCRDPQAIVIVPTRELADQVAAEAERLASGVPTEIAVLSGGKNMNRQLRQLEN 160

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ DH  RG L  NN+  +V+DEADRMLD+GF P I+ I    P  RQTL
Sbjct: 161 GTQLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRMLDIGFRPQIERIMRKCPRNRQTL 220

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+   +++++E+++  P  I+        +T              K  LL+ LL+ 
Sbjct: 221 LLSATLPPVVRRLAESYMHEPVVIDCCRDEMAVDT--IEQRYFTIAQDDKVRLLESLLKR 278

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  I    ++           + G +  AIHG++ QR R ++L   ++G ++ +VA
Sbjct: 279 EKPEQAIIFCRTKRGTDRLHRKLSHEYGSACGAIHGDLQQRERDRVLQKLRDGNLKFLVA 338

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+  RG+DI  + H+ NFDVP   ++Y+HR+GRTGR GR G A+T V   +   + +IE
Sbjct: 339 TDVVGRGIDISTISHIVNFDVPQDCDDYVHRVGRTGRMGRDGVAYTFVVPGEGDILTSIE 398

Query: 362 KLIEK-----KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           + I K     K+D                   +    R  NP+ +K     RR+
Sbjct: 399 QRINKLLIRDKMDGFESPAEKAAAVAAAAPEPEKELRRTLNPMTRKR---PRRR 449


>gi|225429488|ref|XP_002278119.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296081635|emb|CBI20640.3| unnamed protein product [Vitis vinifera]
          Length = 413

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 195/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G       + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 101 QLDYGLVE---CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSS 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V K+D + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     V+ L  +++ L
Sbjct: 396 RFYNVVVEELPSNVADL 412


>gi|147779855|emb|CAN61608.1| hypothetical protein VITISV_040122 [Vitis vinifera]
          Length = 413

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 195/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G       + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 101 QLDYGLVE---CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSS 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V K+D + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     V+ L  +++ L
Sbjct: 396 RFYNVVVEELPSNVADL 412


>gi|118404346|ref|NP_001072473.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Xenopus (Silurana)
           tropicalis]
 gi|112419339|gb|AAI21889.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Xenopus (Silurana)
           tropicalis]
          Length = 666

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 141/398 (35%), Positives = 219/398 (55%), Gaps = 8/398 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI---LEKG 66
           P+V+ A+  +G+ +PTPIQ +  P++LQ  D+ GIAQTGTGKT +++LP           
Sbjct: 269 PEVMSALEKSGFERPTPIQSQAWPVILQGIDLIGIAQTGTGKTLAYLLPGFIHLDLQPIP 328

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTRELA QV     KY      ++ +  GG     Q  K+ +G D++
Sbjct: 329 REQQDGPGMLVLAPTRELALQVKAECSKYKYKGFESICIY-GGGDRNNQINKVTKGVDIV 387

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + +I  LV+DEADRMLDMGF P I  I   +   R T++ SAT
Sbjct: 388 IATPGRLNDLQMNNFVNLKSITYLVLDEADRMLDMGFEPQIMKILIDIRPDRHTIMTSAT 447

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             D ++++++++L++P  + V T    A       V    +  K+  +    + S     
Sbjct: 448 WPDGVRRLAKSYLKDPMMVYVGTLDLAAVNTVTQHVLVIPEEEKRAFV-LHFIDSLKPQD 506

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+F  +K    +L      QG  V ++HGN +Q  R + L +FK+G ++++VA+DLA+
Sbjct: 507 KVIVFVGKKLVADDLSSDFSLQGIPVQSLHGNREQCDREQALDDFKKGKVRILVATDLAS 566

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLD+ DV HV NFD P   E Y+HR+GRTGRAGR G++ TLV ++D K    +  ++E+
Sbjct: 567 RGLDVHDVTHVLNFDFPRNIEEYVHRVGRTGRAGRTGESITLVTRKDWKVAGELISILER 626

Query: 367 KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
               + GDL  +    E+    +     + + IP+K  
Sbjct: 627 ANQEVPGDLFDMA---ERYQQFKIKKDSERDLIPRKGR 661


>gi|238794287|ref|ZP_04637900.1| ATP-dependent RNA helicase rhlB [Yersinia intermedia ATCC 29909]
 gi|238726371|gb|EEQ17912.1| ATP-dependent RNA helicase rhlB [Yersinia intermedia ATCC 29909]
          Length = 428

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 135/419 (32%), Positives = 210/419 (50%), Gaps = 9/419 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+D  L P V+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+    
Sbjct: 9   LKFSDFALHPLVIEALENKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTF 68

Query: 61  T----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                   +   +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q 
Sbjct: 69  HYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQMTGLKLGLAYGGDGYDKQL 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P 
Sbjct: 129 KVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPS 188

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             + L    + T   +     F Q      V       +T        +   +++   L 
Sbjct: 189 VDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQ-KTGHRIQEELFYPSNEEKMRLL 247

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL +F +G +
Sbjct: 248 QTLIEEEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDL 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   +
Sbjct: 308 DILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALN 367

Query: 357 IDAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           + AIE      +     +    L+ L  P         N  R+N+   +     + RK+
Sbjct: 368 LPAIETYTGHSIPVSKYNSDALLTDLPAPKRLARTRTGNGPRRNSAPRRSGAPRNNRKR 426


>gi|331217131|ref|XP_003321244.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309300234|gb|EFP76825.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 547

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 131/379 (34%), Positives = 213/379 (56%), Gaps = 2/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++ G    ++  + +AG+  P+PIQ +  P+ L   DV  ++ TG+GKT +F +P + 
Sbjct: 114 NFSEAGFPDYIMSEIRNAGFNAPSPIQCQAWPMALSGRDVVAVSATGSGKTIAFSIPAMI 173

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  LIL PTRELA Q+     K+G +  +    + GG+P   Q + L
Sbjct: 174 HINAQPLLAPGDGPIVLILAPTRELAVQIQGECTKFGASSRIRNTCVYGGVPKGQQIRDL 233

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA+++I TPGR++D     K  ++ +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 234 TRGAEIVIATPGRLIDMLESRKTNLHRVTYLVMDEADRMLDMGFEPQIKKIVEQIRPDRQ 293

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT   E+Q+++  +L++  ++ V +   TA       V   + + K+  L++ L 
Sbjct: 294 TLMFSATWPKEVQRLASEYLKDFIQVNVGSLDLTANINITQIVEVCSDFEKRGKLIKHLE 353

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +IF   K+   +L   L + G+   AIHG+  Q+ R  +L  FK G   +M
Sbjct: 354 KISSESAKVLIFVGTKRVADDLTKYLRQDGWPSLAIHGDKQQQERDWVLEEFKSGRSPIM 413

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ D+ +V N+D+PN  E+YIHRIGRTGRAGR G A++ ++ +  K    
Sbjct: 414 IATDVASRGLDVKDIAYVINYDMPNGIEDYIHRIGRTGRAGRTGTAYSYISADQSKLAKE 473

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++      +   L  +
Sbjct: 474 LVKILRDAKQIVPSALVEM 492


>gi|253733085|ref|ZP_04867250.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253728993|gb|EES97722.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 517

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 138/436 (31%), Positives = 226/436 (51%), Gaps = 17/436 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S   V ++   G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 14  NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +  ++LIL PTRELA QVA+   ++ +   + V  + GG+P E Q K L++
Sbjct: 74  KVVG----KQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L  + I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 130 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 189

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     F     +  K           
Sbjct: 190 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFT--NFLD 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 248 VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVA 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 308 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 367

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
               +K       +S+L PP  K    +   AR+++   +      ++ ++   + S   
Sbjct: 368 DANGRK-------MSALRPPHRK----EVLQAREDDIKEKVENWMSKKSESRLKRISTEL 416

Query: 422 LKESEKISKLQQDIQE 437
           L E   +  +   +QE
Sbjct: 417 LNEYNDVDLVAALLQE 432


>gi|124361137|gb|ABN09109.1| Helicase, C-terminal [Medicago truncatula]
          Length = 413

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 194/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     V   + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 101 QLDYS---VTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSS 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V  +D + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLSDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     ++ L  +++ L
Sbjct: 396 KFYNVLIEELPSNVAEL 412


>gi|114643639|ref|XP_001154067.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 3 [Pan
           troglodytes]
          Length = 455

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 136/433 (31%), Positives = 219/433 (50%), Gaps = 7/433 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++  +  A    G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 25  TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++G            +
Sbjct: 85  ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      I    N     +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++          SK        + 
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ---YYIFIPSKFKDTYLVYIL 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI KK+         +    E++  AQ     +     +K         +    +  I
Sbjct: 379 EHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSREDAGDNDDTEGAI 438

Query: 421 PLKESEKISKLQQ 433
            ++      K+++
Sbjct: 439 GVRNKVAGGKMKK 451


>gi|39644716|gb|AAH09379.2| DDX47 protein [Homo sapiens]
          Length = 450

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 136/433 (31%), Positives = 219/433 (50%), Gaps = 7/433 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++  +  A    G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 20  TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 79

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++G            +
Sbjct: 80  ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 136

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      I    N     +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 137 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++          SK        + 
Sbjct: 197 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ---YYIFIPSKFKDTYLVYIL 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 254 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 314 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 373

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI KK+         +    E++  AQ     +     +K         +    +  I
Sbjct: 374 EHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSREDAGDNDDTEGAI 433

Query: 421 PLKESEKISKLQQ 433
            ++      K+++
Sbjct: 434 GVRNKVAGGKMKK 446


>gi|56708046|ref|YP_169942.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670517|ref|YP_667074.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457133|ref|ZP_03665606.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370532|ref|ZP_04986537.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874848|ref|ZP_05247558.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|54113663|gb|AAV29465.1| NT02FT0547 [synthetic construct]
 gi|56604538|emb|CAG45585.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320850|emb|CAL08968.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568775|gb|EDN34429.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840847|gb|EET19283.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159241|gb|ADA78632.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 441

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 150/403 (37%), Positives = 237/403 (58%), Gaps = 8/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+  +  A+   GY KPTPIQ + IP+VL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MKFSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++LI TPGR+LD +++  +  +++   V+DEADRMLDMGFI  ++ I +L+P   Q
Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++  FL NP+ +  +  ++T + I                +     
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   ++F   K     +   L   G S  AIHGN  Q +R K L++FK   I ++
Sbjct: 238 IKDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKYNDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+ N AE+Y+HRIGRTGR+G+ G A +LV+ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRSGQEGLAISLVSADEVESLSN 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           IE LI   +  + L G  ++ N P+  +  +    A+K + + 
Sbjct: 358 IEHLIGHLLPREELEGFEATHNVPITSM--SHKTKAKKIDEVK 398


>gi|20149629|ref|NP_057439.2| probable ATP-dependent RNA helicase DDX47 isoform 1 [Homo sapiens]
 gi|52782792|sp|Q9H0S4|DDX47_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
           Full=DEAD box protein 47
 gi|12052856|emb|CAB66601.1| hypothetical protein [Homo sapiens]
 gi|45786091|gb|AAH68009.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Homo sapiens]
 gi|117645464|emb|CAL38198.1| hypothetical protein [synthetic construct]
 gi|119616683|gb|EAW96277.1| hCG2044052 [Homo sapiens]
 gi|119616687|gb|EAW96281.1| hCG27698, isoform CRA_a [Homo sapiens]
 gi|193785403|dbj|BAG54556.1| unnamed protein product [Homo sapiens]
          Length = 455

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 136/433 (31%), Positives = 219/433 (50%), Gaps = 7/433 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++  +  A    G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 25  TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++G            +
Sbjct: 85  ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      I    N     +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++          SK        + 
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ---YYIFIPSKFKDTYLVYIL 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI KK+         +    E++  AQ     +     +K         +    +  I
Sbjct: 379 EHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSREDAGDNDDTEGAI 438

Query: 421 PLKESEKISKLQQ 433
            ++      K+++
Sbjct: 439 GVRNKVAGGKMKK 451


>gi|302308420|ref|NP_985329.2| AFL221Cp [Ashbya gossypii ATCC 10895]
 gi|299790624|gb|AAS53153.2| AFL221Cp [Ashbya gossypii ATCC 10895]
          Length = 557

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 204/377 (54%), Gaps = 3/377 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V + G+ KPT IQ +  P+ L   D+ G+A TG+GKT S+ LP + 
Sbjct: 115 TFDEAGFPEYVLKEVKEEGFEKPTAIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIV 174

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      +    P  L+L PTRELA Q+     K+G++  +    + GG+P   Q + L
Sbjct: 175 HINAQPLLSPGDGPVVLVLAPTRELAVQIQKECSKFGRSSRIRNTCVYGGVPKSQQIRDL 234

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG ++LI TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 235 QRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 294

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+Q+++ ++L +P ++ + +    A       V   + + K+  L++ L 
Sbjct: 295 TLMWSATWPKEVQQLARDYLHDPIQVNIGSLELAASHTITQLVEVVSDFDKRDRLVKHLE 354

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +     + II     K   +   S   + G+   AIHG+  Q+ R  +L+ F+ G   +
Sbjct: 355 IASKDKDSKIIIFASTKRTCDEITSYLRQDGWPALAIHGDKQQQERDWVLNEFRTGRSPI 414

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARG+D+  +  V N+D+P   E+Y+HRIGRTGRAG  G A +   + +     
Sbjct: 415 MVATDVAARGIDVKGINFVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEANKTLGA 474

Query: 359 AIEKLIEKKVDWLNGDL 375
            +  ++ +    +  DL
Sbjct: 475 QLISIMREAKQEIPQDL 491


>gi|261856513|ref|YP_003263796.1| DEAD/DEAH box helicase [Halothiobacillus neapolitanus c2]
 gi|261836982|gb|ACX96749.1| DEAD/DEAH box helicase domain protein [Halothiobacillus
           neapolitanus c2]
          Length = 594

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 145/400 (36%), Positives = 226/400 (56%), Gaps = 15/400 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  L+  ++ +V + GY  P+PIQ K+IP++L+  DV G+AQTGTGKT +F LP+L+ 
Sbjct: 9   FSDFALAAPLLRSVEELGYESPSPIQAKSIPVLLEGKDVLGMAQTGTGKTGAFALPLLSR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-ER 121
           ++     +R P+ L+L PTRELA QVA+  + Y ++      L + G        +  +R
Sbjct: 69  IDIN---LRAPQLLVLAPTRELAIQVAEAMQAYARHLPDFHVLPVYGGQAMEPQLRGLKR 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGRI DH  RG L +N I+ +V+DEAD ML MGFI  +  I S  P  RQ  
Sbjct: 126 GVHVVVGTPGRIQDHIKRGTLKLNQIQAVVLDEADEMLRMGFIDDVDEILSKTPANRQVA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D+++++++  L+NP  I + + +ST + I   + A    +          +  
Sbjct: 186 LFSATMPDQIRRIAQRHLRNPVEIAIKSSTSTVKAINQRYWAVSGMHK---LDALTRILE 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     IIF   K     L   LE +G++   ++G+++Q  R K +   K G++ +++A
Sbjct: 243 VEEFDAVIIFVRTKVATTELAEKLEARGYAASPLNGDMNQAMREKAIDRLKRGSLDIIIA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+  V HV N+D+P   E+Y+HRIGRTGRAGR G+A   VA  + + + AIE
Sbjct: 303 TDVAARGIDVARVSHVVNYDIPLDTESYVHRIGRTGRAGRSGEAILFVAPREKRMLGAIE 362

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           +   + +  +     S        DIA    A   N I +
Sbjct: 363 RATGQLITPMRLPSQS--------DIADKRSAAFKNQISE 394


>gi|15600973|ref|NP_232603.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121586756|ref|ZP_01676539.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121727729|ref|ZP_01680817.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
 gi|147672261|ref|YP_001215860.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|153816784|ref|ZP_01969451.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
 gi|227811827|ref|YP_002811837.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
 gi|229506632|ref|ZP_04396141.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae BX 330286]
 gi|229510570|ref|ZP_04400050.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
 gi|229517298|ref|ZP_04406743.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC9]
 gi|229605109|ref|YP_002875813.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MJ-1236]
 gi|254850597|ref|ZP_05239947.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
 gi|255745988|ref|ZP_05419935.1| ATP-dependent RNA helicase RhlE [Vibrio cholera CIRS 101]
 gi|262162174|ref|ZP_06031189.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae INDRE 91/1]
 gi|262167359|ref|ZP_06035068.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC27]
 gi|298500057|ref|ZP_07009863.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
 gi|9657596|gb|AAF96116.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549053|gb|EAX59090.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121629946|gb|EAX62356.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
 gi|126512587|gb|EAZ75181.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
 gi|146314644|gb|ABQ19184.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|227010969|gb|ACP07180.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
 gi|227014875|gb|ACP11084.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|229345334|gb|EEO10307.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC9]
 gi|229353015|gb|EEO17955.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
 gi|229356983|gb|EEO21901.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae BX 330286]
 gi|229371595|gb|ACQ62017.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MJ-1236]
 gi|254846302|gb|EET24716.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
 gi|255735742|gb|EET91140.1| ATP-dependent RNA helicase RhlE [Vibrio cholera CIRS 101]
 gi|262024243|gb|EEY42935.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC27]
 gi|262028249|gb|EEY46907.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae INDRE 91/1]
 gi|297542038|gb|EFH78089.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
          Length = 451

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 168/392 (42%), Positives = 242/392 (61%), Gaps = 10/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I  I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C         KK   +   L
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADV---KKKPDMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 238 VKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDI 387
           IE+L +  +  +N  L+   P    P  K+D 
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNQLPESKLDT 387


>gi|325964224|ref|YP_004242130.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470311|gb|ADX73996.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 710

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 142/376 (37%), Positives = 220/376 (58%), Gaps = 7/376 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLG+  +V+ A+ D GY KP+PIQ  TIPL+L+  DV G+AQTGTGKTA+F +P L
Sbjct: 67  IKFADLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPAL 126

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQN 116
           +    L       R  + L+L PTRELA QVA+ F  Y K+ +    L + G   +  Q 
Sbjct: 127 SRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQL 186

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L RGA V++ TPGR++DH ++G L ++ ++ LV+DEAD ML MGF   ++ I    P 
Sbjct: 187 AGLRRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQTPS 246

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ  LFSATM  +++++S+ +L NP  I V + ++T       ++     +        
Sbjct: 247 DRQVALFSATMPSQIRRMSKQYLNNPAEISVKSKTTTGANTRQRYLQVMGPHKLDAMTRI 306

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             ++  D +   +      +++ +   S   +GF   AI+G+I Q+ R + +   KEG I
Sbjct: 307 LEVEEFDGVIAFVRTKMATEDLADKLKS---RGFQAAAINGDIPQQQRERTVDALKEGRI 363

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   +   +   
Sbjct: 364 DILVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYL 423

Query: 357 IDAIEKLIEKKVDWLN 372
           + +IEK   + V+ ++
Sbjct: 424 LRSIEKATRQPVEQMH 439


>gi|168467669|ref|ZP_02701506.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168822969|ref|ZP_02834969.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|197265404|ref|ZP_03165478.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|200386552|ref|ZP_03213164.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|238912924|ref|ZP_04656761.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|195630001|gb|EDX48661.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197243659|gb|EDY26279.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|199603650|gb|EDZ02195.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205340707|gb|EDZ27471.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320088331|emb|CBY98091.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322612998|gb|EFY09949.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617414|gb|EFY14314.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625594|gb|EFY22416.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627017|gb|EFY23810.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631267|gb|EFY28030.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638300|gb|EFY34999.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642850|gb|EFY39436.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646994|gb|EFY43496.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650382|gb|EFY46795.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656328|gb|EFY52622.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657553|gb|EFY53823.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665964|gb|EFY62145.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666703|gb|EFY62880.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671054|gb|EFY67184.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322679239|gb|EFY75291.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681643|gb|EFY77670.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686030|gb|EFY82018.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192656|gb|EFZ77884.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197837|gb|EFZ82968.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203726|gb|EFZ88747.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205399|gb|EFZ90373.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210770|gb|EFZ95646.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215936|gb|EGA00669.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221429|gb|EGA05847.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227329|gb|EGA11496.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231738|gb|EGA15849.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236153|gb|EGA20230.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239610|gb|EGA23658.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244294|gb|EGA28302.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249609|gb|EGA33521.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250299|gb|EGA34185.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256506|gb|EGA40237.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259796|gb|EGA43429.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265204|gb|EGA48702.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268367|gb|EGA51839.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 421

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 139/413 (33%), Positives = 208/413 (50%), Gaps = 7/413 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P+VV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 AQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            AIE  I   +     +  +L   L K    +   AR  N   +     +RR+
Sbjct: 369 PAIESYIGHSIPVSKYNPEALMNDLPKP--LRLTRARPGNGPRRAGAPRNRRR 419


>gi|255066127|ref|ZP_05317982.1| ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC 29256]
 gi|255049672|gb|EET45136.1| ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC 29256]
          Length = 468

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 155/437 (35%), Positives = 250/437 (57%), Gaps = 14/437 (3%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ FA LGL  ++V A+ + GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP 
Sbjct: 1   MNPFASLGLGSEIVSALTEQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 60

Query: 60  LTILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           L  L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+  + 
Sbjct: 61  LERLKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDK 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++
Sbjct: 121 QTADLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQML 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQTLLFSAT    ++K++++F+  P+ +EV   ++T+  +E   +A  A   +    
Sbjct: 181 PKPRQTLLFSATFAPPIRKLAKDFMNAPEIVEVAAQNTTSANVEQHIIAVDALKKRNL-- 238

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             + L     M   I+FC  K++V  +   L ++  +  +IHG+  Q+SR++ L+ FKEG
Sbjct: 239 -LERLIVDLQMNQVIVFCKTKQSVDQVTRDLVRRNLAAQSIHGDKSQQSRLETLNAFKEG 297

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           +++++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ K + 
Sbjct: 298 SLRVLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQ 357

Query: 355 KHIDAIEKLIE-----KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           K  +AI++L       ++++    +    +   +     Q    R       +S   +R 
Sbjct: 358 KMFEAIKELTGNDLAVERIEGFEPNWWGSDADGDAAADTQAAPTRSRGSDRNRSERNNRS 417

Query: 410 KKNYSSQKSHIPLKESE 426
           ++N  +++     K  +
Sbjct: 418 ERNERNERGDKSPKADK 434


>gi|221108213|ref|XP_002168355.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 480

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 144/433 (33%), Positives = 209/433 (48%), Gaps = 11/433 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   +    L+ G  KPT IQ+  IP +L   D  G A+TG+GKTA+F LP++ 
Sbjct: 4   KFTDLGLHEWLNKQCLEMGISKPTEIQVSCIPEILSGRDCIGSAKTGSGKTAAFALPIIQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L            LIL PTRELA Q+AD F+  GK+  L  A++IGG+    Q  +L  
Sbjct: 64  KL---SEDPYGIFALILTPTRELAIQIADQFKALGKSIGLNDAVIIGGLDMVKQGMELSN 120

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V+I TPGR+  H   G     N I+ LV+DEADR+L+  F   ++ I   +   RQT
Sbjct: 121 QPHVVIATPGRLASHITSGTKFSLNKIKFLVLDEADRLLEKSFENDLEVIFDNIAKKRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+TD +  + E           +       T             K        L 
Sbjct: 181 LLFSATITDAINHLKEVAHNPFCYEVKSEDDFATVTELDQRYLLIPSQVK--DCYLVHLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              + K+ IIF    ++   +   L K  F    +H  + QR R+  L  F+ G ++++V
Sbjct: 239 QNFSEKSVIIFTQTCRSCQVISFMLRKVEFKCAGLHSVMSQRERLSSLGRFRSGHVKILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V N++VP   ++Y+HR+GRT RAGR G + TL+ + DI  + AI
Sbjct: 299 ATDVASRGLDIPLVQLVINYNVPASPKDYVHRVGRTARAGRGGMSLTLLTQFDIDRLKAI 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  I  K+     +       L+ I I      R+   I      F  +KKN   +   +
Sbjct: 359 ETFIGLKMKEFETNEDDAVKLLKPISII-----RREVEIRLNDANFGEKKKNNKRKLGLL 413

Query: 421 PLKESEKISKLQQ 433
                 K+   ++
Sbjct: 414 NSNSKPKLFNKKK 426


>gi|196230475|ref|ZP_03129337.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
 gi|196225405|gb|EDY19913.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
          Length = 591

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 141/367 (38%), Positives = 217/367 (59%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLSP+++ AV   G+ + +PIQ +TIP +L   DV G++QTG+GKTA+F +P +  
Sbjct: 6   FTELGLSPELLKAVAKMGFEEASPIQSETIPQLLTGADVVGLSQTGSGKTAAFAIPAIER 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           ++     +R P+ LIL PTRELA QVA+   K       +    + GG  ++ Q + L  
Sbjct: 66  VDGN---LRAPQVLILCPTRELAMQVAEEVAKLAFFKRGVRELPIYGGQSYDRQLRGLRD 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA ++I TPGR++DH  R  L ++ + ++++DEADRMLDMGF   I+ I    P  RQT+
Sbjct: 123 GAQIIIGTPGRVMDHLERKTLRLDQVGMIILDEADRMLDMGFRDDIETILGQAPAERQTV 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   + ++ + + + P  + +     T   I     + Y    +    +   L  
Sbjct: 183 FFSATMPPAINQLVKKYTKEPVNVRIQAQEMTVPAI---DQSYYEVDRRSKLEVLCRLID 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +K GIIFC  K  V  L   L+ +G+S   +HG+I Q  R ++++ F++   + +VA
Sbjct: 240 LQDIKYGIIFCATKMMVDELSDHLKARGYSSDKLHGDISQSMRERVVAKFRKRGFEFLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ D+  VFN+D+P  AE+Y+HRIGRTGRAGR G+A T VA  +I  +  I 
Sbjct: 300 TDVAARGLDVDDIEVVFNYDLPQDAEDYVHRIGRTGRAGRSGRAVTFVAGREIWKMQQII 359

Query: 362 KLIEKKV 368
           +  + KV
Sbjct: 360 RFTKGKV 366


>gi|307823522|ref|ZP_07653751.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307735507|gb|EFO06355.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 462

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 141/406 (34%), Positives = 228/406 (56%), Gaps = 17/406 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L P ++  +   GY   TPIQ +++P +L+  DV   A+TG+GKTA+F + +L+
Sbjct: 5   KFSSLALKPALLENIESLGYTHLTPIQAESLPHILEGRDVIAQAKTGSGKTAAFGIGLLS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+    RV+    +++ PTRELA QV     +  +       L +  G+PF  Q   LE
Sbjct: 65  KLDLNSFRVQ---AMVVCPTRELADQVCKEIRRLARFTQNIKVLTLCGGVPFGPQRASLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  V++ TPGR+ +H  +  L ++N+++LV+DEADRMLDMGF   I ++ S  P  RQT
Sbjct: 122 HGVHVVVGTPGRLQEHLGKRSLRLSNLKVLVLDEADRMLDMGFEEAITDVISYAPTHRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT TD ++++S+ F   P  + + T    ++  +  +    ++ +     L     
Sbjct: 182 LLFSATYTDPIREISQKFQFKPVSVSIETSHHDSDIEQRFYQVEKSKRTNALGYLL---- 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S    ++ ++FCN K++  ++  SLE  GF+V A+HG+++Q+ R ++L  F   +  ++V
Sbjct: 238 SYYRPESTVVFCNTKRDCQDVASSLENSGFTVQALHGDLEQKDRDQVLVRFSNKSCSVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+  V N+D+P   E Y+HRIGRTGRAG+ G A +L  ++++  + AI
Sbjct: 298 ATDVAARGLDIKDMQAVINYDLPWDPEIYVHRIGRTGRAGKKGLALSLCTEQELNRVKAI 357

Query: 361 EKLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           E+       W               PP+  + I   +  RKN   P
Sbjct: 358 EEYQNTPAKWDEVAPFQMSHEQRFEPPMVTLWI---DGGRKNKVRP 400


>gi|90075448|dbj|BAE87404.1| unnamed protein product [Macaca fascicularis]
          Length = 566

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 135/441 (30%), Positives = 221/441 (50%), Gaps = 6/441 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 154 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 213

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 214 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453

Query: 358 DAIEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N  L  L                  R++     K  GF+  +   +
Sbjct: 454 SDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 513

Query: 415 SQKSHIPLKESEKISKLQQDI 435
             + +  L + +  +K Q  +
Sbjct: 514 YDRGYSSLLKRDFGAKTQNGV 534


>gi|254456111|ref|ZP_05069540.1| ATP-dependent RNA helicase RhlE [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083113|gb|EDZ60539.1| ATP-dependent RNA helicase RhlE [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 536

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 138/435 (31%), Positives = 223/435 (51%), Gaps = 14/435 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L +   +  ++    + KPTPIQ   IP  L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKLLKIEESLKNSLNKMNFTKPTPIQGMAIPAALEGKDILGTAQTGTGKTLAFSIPLIN 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   +    +      E        +           N+  ALLIGG   + Q ++L  
Sbjct: 63  KLILDKNAFALVMCPTRE---LATQVMEAIKSIISDKINIKTALLIGGESMQKQLRQLGN 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + +++ TPGRI DH  R  L ++  + LV+DE DRMLDMGF P I+ +   VP   QTL
Sbjct: 120 RSRIIVGTPGRINDHLKRKSLNLSATKYLVLDETDRMLDMGFTPQIEMVLKFVPKDHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   + ++SE +L  P+RI     S     I+   +  +    K+    + + Q 
Sbjct: 180 LFSATLPQNILRISERYLHKPERISTGATSVPIAKIKQETLQVF----KENKYDELIDQF 235

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + ++F   K++   +   L+++G S   IHG++ Q  R +++++F++G  ++++A
Sbjct: 236 LARKGSILVFVKTKRSADKMVKRLKEEGHSADGIHGDLRQSKRDRVINSFRKGLKRILIA 295

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP + HV N+D+P   E+Y+HRIGRT RAG  G A T +  +D    ++I 
Sbjct: 296 TDVAARGLDIPLIQHVINYDLPQVPEDYVHRIGRTARAGSEGSALTFLTPDDRSMWNSIN 355

Query: 362 KLIEKKVDWLNGDL--SSLNPPLEKIDIAQHNHARKNNP-----IPQKSTGFDRRKKNYS 414
           KLI+     +   L   S N    K    +   AR+           +S+ F  + K+Y 
Sbjct: 356 KLIDPNFKAVPSGLRRDSKNKRRGKGPNNKKRKAREEKRSFGKGRQDRSSSFRNKPKSYD 415

Query: 415 SQKSHIPLKESEKIS 429
             +S  P ++ EK S
Sbjct: 416 KSRSGKPPRDGEKKS 430


>gi|171687132|ref|XP_001908507.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943527|emb|CAP69180.1| unnamed protein product [Podospora anserina S mat+]
          Length = 489

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 129/382 (33%), Positives = 206/382 (53%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 62  NFDEAGFPRYVMDEVKAQGFPAPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 121

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 122 HINAQPLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQIRDL 181

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 182 QRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 241

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA---TYAQYSKKCALLQ 236
           TL++SAT   +++ ++ +FL +  ++ + +   +A       V       +  K    L+
Sbjct: 242 TLMWSATWPKDVRNLASDFLTDFIQVTIGSMDLSANHRITQIVEVVSESEKRDKMIKELE 301

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++++ +      +IF   K+    +   L + G+   +IHG+  Q  R  +L  FK G  
Sbjct: 302 KIMEDKTAENKCLIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKS 361

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +MVA+D+A+RG+D+ ++ HV N+D PN +E+YIHRIGRTGRAG  G A T    ++ K 
Sbjct: 362 PIMVATDVASRGIDVRNITHVINYDYPNNSEDYIHRIGRTGRAGAKGTAITYFTTDNAKQ 421

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
              +  ++ +    ++  L  +
Sbjct: 422 ARDLVGVLREAKQVIDPRLEEM 443


>gi|169618000|ref|XP_001802414.1| hypothetical protein SNOG_12185 [Phaeosphaeria nodorum SN15]
 gi|160703529|gb|EAT80597.2| hypothetical protein SNOG_12185 [Phaeosphaeria nodorum SN15]
          Length = 498

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 115/377 (30%), Positives = 186/377 (49%), Gaps = 7/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 25  LEFEDFFIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 84

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     ++   + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 85  ERV---NPKISKTQALILVPTRELALQTSQVCKTLGKHLGINVMVSTGGTGLKDDIIRLS 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +G   ++  +  V+DEAD++L   F P ++ +    P  RQ 
Sbjct: 142 DPVHIIVGTPGRILDLAGKGVADLSTCQTFVMDEADKLLSPEFTPVVEQLLGFHPKDRQV 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F                 T+            K+       L 
Sbjct: 202 MLFSATFPIVVKT----FKDKHMNSPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 258 NKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLV 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 318 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYRI 377

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +   +  
Sbjct: 378 EQELGTEIQPIPQVIEK 394


>gi|118582182|sp|Q0U7S9|DHH1_PHANO RecName: Full=ATP-dependent RNA helicase DHH1
          Length = 522

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 115/377 (30%), Positives = 186/377 (49%), Gaps = 7/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 49  LEFEDFFIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 108

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     ++   + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 109 ERV---NPKISKTQALILVPTRELALQTSQVCKTLGKHLGINVMVSTGGTGLKDDIIRLS 165

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +G   ++  +  V+DEAD++L   F P ++ +    P  RQ 
Sbjct: 166 DPVHIIVGTPGRILDLAGKGVADLSTCQTFVMDEADKLLSPEFTPVVEQLLGFHPKDRQV 225

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F                 T+            K+       L 
Sbjct: 226 MLFSATFPIVVKT----FKDKHMNSPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 281

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 282 NKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLV 341

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 342 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYRI 401

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +   +  
Sbjct: 402 EQELGTEIQPIPQVIEK 418


>gi|82523824|emb|CAI78566.1| hypothetical protein [uncultured candidate division OP8 bacterium]
          Length = 453

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 143/371 (38%), Positives = 211/371 (56%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P ++ A+ + G+ +PTPIQ   IP  +   DV   A TG+GKTA+F+LP+L
Sbjct: 1   MPFSSLHLHPTLLKALKELGFPRPTPIQADAIPPAMSGRDVMASAVTGSGKTAAFLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L          R L++ PTRELAAQ+ ++      +  ++ A + GG+    Q     
Sbjct: 61  HQLIDRPRGTT--RALVITPTRELAAQILEDLNDLAVHTPISAAAVFGGVSIRPQEHAFR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDHF      +  +E LV+DEADRMLDMGF+P I+ I   +P  RQT
Sbjct: 119 RGVDVLIGTPGRLLDHFRAPYAKLAGLEHLVLDEADRMLDMGFLPDIRRILKHIPARRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   +  ++   L+NP  + +N  ++ A  I            +  A L   L 
Sbjct: 179 LFFSATMPAPIGVLAREMLRNPATVNINRIAAPAAGITQAVYPVAQ---ELKAALLVALL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D +++ ++F   K     L   L +QG     IHGN  Q  R + L+ FK G  +++V
Sbjct: 236 KRDDIRDALVFTRTKHRANRLAEHLVRQGIKAERIHGNRSQGRRTEALAGFKAGKYRVLV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++GHV NFDVP   ++YIHR+GRT RA   G AFT V+ ++   +  I
Sbjct: 296 ATDIAARGIDVTELGHVVNFDVPLVPDDYIHRVGRTARAEATGDAFTFVSPQEQGDLTRI 355

Query: 361 EKLIEKKVDWL 371
           E++I K++  +
Sbjct: 356 ERVIGKQLPRI 366


>gi|238759816|ref|ZP_04620973.1| ATP-dependent RNA helicase rhlB [Yersinia aldovae ATCC 35236]
 gi|238701959|gb|EEP94519.1| ATP-dependent RNA helicase rhlB [Yersinia aldovae ATCC 35236]
          Length = 428

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 135/418 (32%), Positives = 210/418 (50%), Gaps = 9/418 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P+V+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPQVIEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                  +   +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQMTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 DKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQ-KTGHRIQEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL +F +G + 
Sbjct: 249 TLIEEEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            AIE      +     +    L+ L  P         N  R+N+   +     + RK+
Sbjct: 369 PAIETYTGHSIPVSKYNSDALLTDLPAPKRLARTRTGNGPRRNSAPRRSGAPRNNRKR 426


>gi|163758551|ref|ZP_02165638.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
 gi|162283841|gb|EDQ34125.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
          Length = 508

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 155/419 (36%), Positives = 229/419 (54%), Gaps = 18/419 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++  +       PTPIQ + IP VL+  DV G+AQTGTGKTA+F LP+L
Sbjct: 10  MLFSQLGLSKALLDTLDQLHLTTPTPIQTQAIPPVLEGRDVIGLAQTGTGKTAAFTLPIL 69

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G+        + IL PTREL+AQ+A   +  G+  +L  A+++GG+    Q K L
Sbjct: 70  HRLAPGKPAGPKKARVLILSPTRELSAQIAKTVKDLGRKLSLRSAVVVGGVSIRPQIKTL 129

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVLI TPGR++D   +  + +N IE++V+DEAD+MLD+GF+P I+ I ++ P TRQ
Sbjct: 130 ASGVDVLIATPGRLMDLIEQRAVSLNEIEVVVLDEADQMLDIGFMPAIKRILAMTPATRQ 189

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E++++S+  L +P  + V     TA+ +EH  +                L
Sbjct: 190 TLLFSATMPKEIRQLSDRHLTDPIEVSVIPAKKTADRVEHSVMHMQPGAK---MGALASL 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  I+F   K+        LE  G +  AIHGN  Q  R + L+ F+ GT+ ++
Sbjct: 247 IRDRKGERVIVFTRTKRGADKAAKRLEGDGINAAAIHGNKSQGQRERALAGFRAGTVPVL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+P V  V N+++PN  E Y+HRIGRT RAG  G A T  A ++   +  
Sbjct: 307 IATDIAARGIDVPGVSLVVNYELPNVPEVYVHRIGRTARAGAEGTAVTFCAPDERSLLRD 366

Query: 360 IEKLIEKKVDWLN--------------GDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           IEK+++  +   N              GD + LN        A+   A+       +S 
Sbjct: 367 IEKMLKVAIPVENAPEGTYVDALADPDGDFAPLNRTQRPRQGARPQGAKPQGQGRNRSG 425


>gi|297478376|ref|XP_002690065.1| PREDICTED: rCG25924-like [Bos taurus]
 gi|296484278|gb|DAA26393.1| rCG25924-like [Bos taurus]
          Length = 643

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 142/404 (35%), Positives = 221/404 (54%), Gaps = 5/404 (1%)

Query: 2   DFAD-LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +F D     P+V+  +  AG+ KPTPIQ +  P++LQ  D+ G+AQTGTGKT S+++P  
Sbjct: 239 NFEDAFHCYPEVMRNIEKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGF 298

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++        P  L+L PTRELA QV     +Y     L    + GG   + Q K L 
Sbjct: 299 IHIDSQPVARNGPGMLVLTPTRELALQVDAECSEYS-YRGLKSVCIYGGGDRDGQIKDLS 357

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GAD++I TPGR+ D      + + +I  LV+DEAD+MLDMGF P I  I   V   RQT
Sbjct: 358 KGADIIIATPGRLHDLQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQT 417

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT    ++++++++L+ P  + V T    A +     +    +  K  + +Q  + 
Sbjct: 418 VMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVTQNIIVTTEDEK-RSHIQAFID 476

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S       IIF ++K    +L   L  +  SV ++HGN +Q  R + L +FK G +++++
Sbjct: 477 SMSPKDKVIIFVSRKAVADHLSSDLGIRRISVESLHGNREQSDRERALKSFKTGKVRILI 536

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLD+ DV HV+N+D P   E Y+HR+GRTGRAGR G + TL+ + D K    +
Sbjct: 537 ATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRNDWKIAGEL 596

Query: 361 EKLIEKKVDWLNGDLSSLNP--PLEKIDIAQHNHARKNNPIPQK 402
             ++E+    +  DL S+       K+     N   +    P+K
Sbjct: 597 INILERANQSVPEDLVSMAERYKANKLKKETENKWGRPQGKPRK 640


>gi|299132277|ref|ZP_07025472.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
 gi|298592414|gb|EFI52614.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
          Length = 509

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 168/468 (35%), Positives = 250/468 (53%), Gaps = 12/468 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL+  +  A+ +  YV PTPIQ +TIP+ +   DV GIAQTGTGKTASF LP+L 
Sbjct: 3   SFQDFGLADPISRALREENYVTPTPIQAQTIPIAITGRDVVGIAQTGTGKTASFALPILH 62

Query: 62  ILEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L + R R +     +L   PTREL+ Q+ D+F  YG++  L+ AL IGG+P   Q + +
Sbjct: 63  RLLENRVRPQPKTCRVLVLSPTRELSGQILDSFNAYGRHLRLSAALAIGGVPMGRQVRAM 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G +VL+ TPGR+LD      + +N +E LV+DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 123 MQGVEVLVATPGRLLDLVQGNAVRLNQVEFLVLDEADRMLDMGFINDIRKIVAKLPVKRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM  ++ +++E+ L++P R+ V   SSTAE I    +                L
Sbjct: 183 TLFFSATMPKDIAELAEHMLRDPARVAVTPVSSTAERITQRIIQLDHSAK---PATLSEL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              + +   ++F   K     +   L K G    AIHGN  Q  R ++L++F+ G I+ +
Sbjct: 240 LKSEPVNRALVFTRTKHGADKVVRGLVKAGIPSEAIHGNKSQNHRERVLASFRNGDIRTL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HVFNFD+PN  E Y+HRIGRT RAG  G A +LVA E+  ++  
Sbjct: 300 VATDIAARGIDVDGITHVFNFDLPNIPETYVHRIGRTARAGADGTAISLVAGEENTYLRD 359

Query: 360 IEKLIEKKVDWL-----NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           IE+LI   +          +  S  P   + +        +     + + G  + +   +
Sbjct: 360 IERLIRVTLPREDRRTGKHETPSQPPAQPRKNHRGGGQGHQGQGKGRGNQGHGKGRSFEA 419

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGFRG--NMPAFMLPKNRGK 460
           S  SH       +  + ++    +        G  + PA      +GK
Sbjct: 420 SDHSHADGAPGSRGPQRRRRHPGHGVSPGANPGSHHDPAATPRAEQGK 467


>gi|11121196|emb|CAC14786.1| DEAD box protein [Homo sapiens]
          Length = 455

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 136/433 (31%), Positives = 219/433 (50%), Gaps = 7/433 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++  +  A    G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 25  TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++G            +
Sbjct: 85  ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      I    N     +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++          SK        + 
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ---YYIFIPSKFKDTYLVYIL 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKESSILL 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI KK+         +    E++  AQ     +     +K         +    +  I
Sbjct: 379 EHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSREDAGDNDDTEGAI 438

Query: 421 PLKESEKISKLQQ 433
            ++      K+++
Sbjct: 439 GVRNKVAGGKMKK 451


>gi|16803286|ref|NP_464771.1| hypothetical protein lmo1246 [Listeria monocytogenes EGD-e]
 gi|224499083|ref|ZP_03667432.1| hypothetical protein LmonF1_05030 [Listeria monocytogenes Finland
           1988]
 gi|224501811|ref|ZP_03670118.1| hypothetical protein LmonFR_04752 [Listeria monocytogenes FSL
           R2-561]
 gi|284801628|ref|YP_003413493.1| hypothetical protein LM5578_1381 [Listeria monocytogenes 08-5578]
 gi|284994770|ref|YP_003416538.1| hypothetical protein LM5923_1334 [Listeria monocytogenes 08-5923]
 gi|16410662|emb|CAC99324.1| lmo1246 [Listeria monocytogenes EGD-e]
 gi|284057190|gb|ADB68131.1| hypothetical protein LM5578_1381 [Listeria monocytogenes 08-5578]
 gi|284060237|gb|ADB71176.1| hypothetical protein LM5923_1334 [Listeria monocytogenes 08-5923]
          Length = 470

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 135/477 (28%), Positives = 228/477 (47%), Gaps = 30/477 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+  +L LS ++  A+ + GY + TP+Q   IP+ L   D+   +QTG+GKTA+F +P+ 
Sbjct: 1   MN--NLKLSEEIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIA 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +E    +   P+ LI+ PTRELA QV       G+   +  A + G  PF  Q  +L 
Sbjct: 59  EQVEWEENK---PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELS 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+LDH  +G L ++ +  LV+DE D ML MGFI  +++I S +P  RQ 
Sbjct: 116 QKNHIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQN 175

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM +             KR + N       + +   +      +       + + 
Sbjct: 176 LFFSATMPE-------EMQDLIKRYQDNPMVIEMASEKTNPIFHVEMQTDNKEKTLKDVL 228

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +   + IIFCN K  V  L             IHG + Q  R + + +FK G  + ++
Sbjct: 229 ITENPDSAIIFCNTKNQVDELTDL---LDVKASKIHGGLRQEDRFRAMDDFKSGKSRFLI 285

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A RG+D+ +V  V N+D+P   ENY+HRIGRTGRAG+ GKA + V   +   +  I
Sbjct: 286 ATDVAGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDI 345

Query: 361 EKLIEKKVD--------WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK---STGFDRR 409
           E++++  ++         +  +  +     +K    +     K N    K   + G  ++
Sbjct: 346 EEMLDVTIEKKRKPTVIEVKVNEDAFRKKQQKRPTIKKARGEKLNKNIMKLYFNGGKKKK 405

Query: 410 KK--NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            +  ++    S +    +E I  +   I+++ +      G  PA +      K+  +
Sbjct: 406 IRAVDFVGTISKLEGITAEDIGII--TIEDHVSFVEILNGKGPAVLEMMRSRKVKGR 460


>gi|325287711|ref|YP_004263501.1| DEAD/DEAH box helicase domain-containing protein [Cellulophaga
           lytica DSM 7489]
 gi|324323165|gb|ADY30630.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
           7489]
          Length = 450

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 138/395 (34%), Positives = 219/395 (55%), Gaps = 6/395 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L  ++  A+ D G+  PTPIQ +  P+V+   D+ GIAQTGTGKT +++LP+L 
Sbjct: 3   SFSDFNLKKQLHYAIDDLGFTTPTPIQKEAFPVVMSGKDMIGIAQTGTGKTFAYMLPILQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   + +   PR LIL PTREL  QV +    + K  N+ V  + GG     Q + + +
Sbjct: 63  DLAFSKQK--NPRVLILVPTRELVLQVVEQINSFAKYINVRVMGVYGGTNMNTQAQAVSQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G+D+++ TPGR+ D      L + +I+ LVIDE D MLD+GF   I NI  L+P  RQ +
Sbjct: 121 GSDIIVATPGRLYDLVLARALQLKSIKKLVIDEVDVMLDLGFRFQITNIFELLPTRRQNI 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATMTD+++ +  +F  NP+++ +    +  + I     A    Y+K   L+  L   
Sbjct: 181 MFSATMTDDVETLINDFFINPEKVSIAVSGTPLDNISQTCYAVPNFYTKANLLVHLLKDK 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   K  +   N++          E     +C IH N  Q  R++ ++ F EG  +++V 
Sbjct: 241 ETYKKVLVFVANKRFADRLFNSLEEIFSDELCVIHSNKTQNYRIRSINQFDEGINRILVT 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  + HV NFD P   ENY+HRIGRTGRA   G +     +++ ++ DAIE
Sbjct: 301 TDVMARGLDLDKISHVINFDTPTFPENYMHRIGRTGRAEEQGNSILFYTEKEEEYKDAIE 360

Query: 362 KLIEKKVDWLNG----DLSSLNPPLEKIDIAQHNH 392
           +L++ K+  +      ++S    P E+  I +H++
Sbjct: 361 ELMDYKIPTITIPESVEISKELIPEERPKILEHHN 395


>gi|159463464|ref|XP_001689962.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158283950|gb|EDP09700.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 567

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 132/380 (34%), Positives = 196/380 (51%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F  +G  P ++  +  AG+  PTPIQ +  P+ L   D+  IA+TG+GKT  F+LP ML
Sbjct: 126 TFESVGFPPDILDEIRRAGFKSPTPIQAQAWPIALSGRDLVAIAKTGSGKTCGFLLPGML 185

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I    +     P  L+L PTRELA Q+    +K+G++  +    + GG P   Q + L+
Sbjct: 186 HIQATRKDARVGPTLLVLAPTRELAVQIKTEADKFGRSSGIRNTCVYGGAPKGPQLRDLQ 245

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  ++I TPGR+ D    G++ +  +  LV+DEADRMLDMGF P IQ I   +P  RQT
Sbjct: 246 YGVQIVIATPGRLNDFLEAGQVRLQQVSYLVLDEADRMLDMGFEPQIQRIVRTLPRQRQT 305

Query: 181 LLFSATMTDELQKVSENF--LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           L FSAT   E++ ++  F   Q                       +      +       
Sbjct: 306 LFFSATWPREVKHIASQFVVNQTVHVFIGGVEEKLVANKSITQYVSVVNGMHEKFAELAK 365

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +         II     K + +       + F   AIHG+  Q  R  +L  FK+G   +
Sbjct: 366 IIRAKPPGTRIIIFCTTKRMCDQLSYQMGREFRSAAIHGDKKQSERDYVLQAFKDGRTPI 425

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIP+V  V NFD P   E+YIHRIGRTGRAG  G+++T +++ED KH  
Sbjct: 426 LVATDVAARGLDIPNVAAVVNFDFPTGTEDYIHRIGRTGRAGATGESYTFMSQEDAKHAR 485

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + +++ +    ++ +L  L
Sbjct: 486 DLMQVMREAGQTISPELEQL 505


>gi|170077242|ref|YP_001733880.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
 gi|12003026|gb|AAG43442.1|AF186181_2 ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
 gi|169884911|gb|ACA98624.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
          Length = 487

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 144/367 (39%), Positives = 215/367 (58%), Gaps = 5/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GLS   V  + + G+ KPT IQ K IP +L+  DV G++QTGTGKTA++ LP L 
Sbjct: 4   SFQTIGLSDARVDLLENIGFEKPTEIQSKAIPAILEGRDVVGLSQTGTGKTAAYSLPFLE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+    LIL PTRELA QV  + +++  +  L V  + GG   E Q + L++
Sbjct: 64  KIDLEQKTVQG---LILTPTRELAVQVTQSLKEFAVDRRLWVLTVCGGQSMERQIRSLQK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++D   RGKL    +   V+DEAD ML MGFI  ++ I    P TRQT+
Sbjct: 121 GVHIVVGTPGRVIDLLERGKLSFEELRWAVLDEADEMLSMGFIDDVKKILRQSPKTRQTV 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   ++ + ENFL +P  I +  P  T + I          +SK  A     +  
Sbjct: 181 CFSATMPPAIRDLVENFLNDPINITIKQPQVTPDRIAQEVYMIPRGWSKTKA--LLPILE 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ IIF   K+    L + L + G S    HG+++Q  R K++  FK+G I+++VA
Sbjct: 239 MANPESAIIFVRTKRTASELTNELVEAGQSADEYHGDLNQNQREKLVRRFKDGKIKMIVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++ HV NFD+P+  E+YIHRIGRTGRAG+ G A  LV   D + +  IE
Sbjct: 299 TDIAARGLDVENLSHVINFDLPDNTESYIHRIGRTGRAGKTGTAIALVEPSDRRLLRQIE 358

Query: 362 KLIEKKV 368
           + +++ +
Sbjct: 359 RRVKQSL 365


>gi|195146854|ref|XP_002014399.1| GL19172 [Drosophila persimilis]
 gi|194106352|gb|EDW28395.1| GL19172 [Drosophila persimilis]
          Length = 459

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 109/375 (29%), Positives = 187/375 (49%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L  +++  + + G+ +P+PIQ   IP+ L   DV   A+ GTGKT ++ +P+L 
Sbjct: 59  EFEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLE 118

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + L++ PTRELA Q +    +  K+ ++ V +  GG   +    ++ +
Sbjct: 119 QIDPT---KDYIQALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQ 175

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD  ++    M++  ILV+DEAD++L + F   + ++   +P   Q L
Sbjct: 176 KVQLIIATPGRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQIL 235

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F++   R           T++           ++       L S
Sbjct: 236 LFSATFPLTVKN----FMEKHLREPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFS 291

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+    IH  + Q  R ++  +F++G  + +V 
Sbjct: 292 KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVC 351

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  IE
Sbjct: 352 SDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIE 411

Query: 362 KLIEKKVDWLNGDLS 376
           K +  ++  +   + 
Sbjct: 412 KELGTEIKPIPKVID 426


>gi|194859644|ref|XP_001969421.1| GG10095 [Drosophila erecta]
 gi|195473543|ref|XP_002089052.1| me31B [Drosophila yakuba]
 gi|190661288|gb|EDV58480.1| GG10095 [Drosophila erecta]
 gi|194175153|gb|EDW88764.1| me31B [Drosophila yakuba]
          Length = 459

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 109/375 (29%), Positives = 187/375 (49%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L  +++  + + G+ +P+PIQ   IP+ L   DV   A+ GTGKT ++ +P+L 
Sbjct: 59  EFEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLE 118

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + L++ PTRELA Q +    +  K+ ++ V +  GG   +    ++ +
Sbjct: 119 QIDPT---KDYIQALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQ 175

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD  ++    M++  ILV+DEAD++L + F   + ++   +P   Q L
Sbjct: 176 KVQLIIATPGRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQIL 235

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F++   R           T++           ++       L S
Sbjct: 236 LFSATFPLTVKN----FMEKHLREPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFS 291

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+    IH  + Q  R ++  +F++G  + +V 
Sbjct: 292 KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVC 351

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  IE
Sbjct: 352 SDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIE 411

Query: 362 KLIEKKVDWLNGDLS 376
           K +  ++  +   + 
Sbjct: 412 KELGTEIKPIPKVID 426


>gi|114153757|sp|Q9LYJ9|RH46_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 46
 gi|332004672|gb|AED92055.1| DEAD-box ATP-dependent RNA helicase 46 [Arabidopsis thaliana]
          Length = 645

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 131/379 (34%), Positives = 207/379 (54%), Gaps = 2/379 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   GL  +++  V  AG+  P+PIQ ++ P+ +Q  D+  IA+TG+GKT  +++P  
Sbjct: 161 MSFEATGLPNELLREVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGF 220

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L++     RM P  L+L PTRELA Q+     K+GK+  ++ A L GG P   Q K++
Sbjct: 221 MHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEI 280

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+++ TPGR+ D     ++ ++ +  LV+DEADRMLDMGF P I+ I + VP  RQ
Sbjct: 281 ERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQ 340

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+++AT   E++K++ + L NP ++ +                       +     + +
Sbjct: 341 TLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAP-MEKHSRLEQI 399

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + II     K + +       + F   AIHG+  Q  R  +L+ F+ G   ++
Sbjct: 400 LRSQEPGSKIIIFCSTKRMCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVL 459

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+  V N+D PN  E+Y+HRIGRTGRAG  G A+T    +D KH   
Sbjct: 460 VATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASD 519

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E     +   +  +
Sbjct: 520 LIKILEGANQKVPPQVREM 538


>gi|157594|gb|AAA28603.1| RNA helicase [Drosophila melanogaster]
          Length = 459

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 109/375 (29%), Positives = 187/375 (49%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L  +++  + + G+ +P+PIQ   IP+ L   DV   A+ GTGKT ++ +P+L 
Sbjct: 59  EFEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLE 118

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + L++ PTRELA Q +    +  K+ ++ V +  GG   +    ++ +
Sbjct: 119 QIDPT---KDYIQALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQ 175

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD  ++    M++  ILV+DEAD++L + F   + ++   +P   Q L
Sbjct: 176 KVQLIIATPGRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQIL 235

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F++   R           T++           ++       L S
Sbjct: 236 LFSATFPLTVKN----FMEKHLREPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFS 291

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+    IH  + Q  R ++  +F++G  + +V 
Sbjct: 292 KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVC 351

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  IE
Sbjct: 352 SDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIE 411

Query: 362 KLIEKKVDWLNGDLS 376
           K +  ++  +   + 
Sbjct: 412 KELGTEIKPIPKVID 426


>gi|24583281|ref|NP_723539.1| maternal expression at 31B, isoform B [Drosophila melanogaster]
 gi|22946109|gb|AAN10728.1| maternal expression at 31B, isoform B [Drosophila melanogaster]
          Length = 428

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 109/375 (29%), Positives = 187/375 (49%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L  +++  + + G+ +P+PIQ   IP+ L   DV   A+ GTGKT ++ +P+L 
Sbjct: 28  EFEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLE 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + L++ PTRELA Q +    +  K+ ++ V +  GG   +    ++ +
Sbjct: 88  QIDPT---KDYIQALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQ 144

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD  ++    M++  ILV+DEAD++L + F   + ++   +P   Q L
Sbjct: 145 KVQLIIATPGRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQIL 204

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F++   R           T++           ++       L S
Sbjct: 205 LFSATFPLTVKN----FMEKHLREPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFS 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+    IH  + Q  R ++  +F++G  + +V 
Sbjct: 261 KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVC 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  IE
Sbjct: 321 SDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIE 380

Query: 362 KLIEKKVDWLNGDLS 376
           K +  ++  +   + 
Sbjct: 381 KELGTEIKPIPKVID 395


>gi|24583279|ref|NP_523533.2| maternal expression at 31B, isoform A [Drosophila melanogaster]
 gi|41712743|sp|P23128|DDX6_DROME RecName: Full=Putative ATP-dependent RNA helicase me31b; AltName:
           Full=Maternal expression at 31B
 gi|15291637|gb|AAK93087.1| LD21247p [Drosophila melanogaster]
 gi|22946108|gb|AAF52881.2| maternal expression at 31B, isoform A [Drosophila melanogaster]
 gi|220954648|gb|ACL89867.1| me31B-PA [synthetic construct]
          Length = 459

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 109/375 (29%), Positives = 187/375 (49%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L  +++  + + G+ +P+PIQ   IP+ L   DV   A+ GTGKT ++ +P+L 
Sbjct: 59  EFEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLE 118

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + L++ PTRELA Q +    +  K+ ++ V +  GG   +    ++ +
Sbjct: 119 QIDPT---KDYIQALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQ 175

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD  ++    M++  ILV+DEAD++L + F   + ++   +P   Q L
Sbjct: 176 KVQLIIATPGRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQIL 235

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F++   R           T++           ++       L S
Sbjct: 236 LFSATFPLTVKN----FMEKHLREPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFS 291

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+    IH  + Q  R ++  +F++G  + +V 
Sbjct: 292 KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVC 351

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  IE
Sbjct: 352 SDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIE 411

Query: 362 KLIEKKVDWLNGDLS 376
           K +  ++  +   + 
Sbjct: 412 KELGTEIKPIPKVID 426


>gi|113968755|ref|YP_732548.1| ATP-dependent RNA helicase RhlB [Shewanella sp. MR-4]
 gi|114049101|ref|YP_739651.1| ATP-dependent RNA helicase RhlB [Shewanella sp. MR-7]
 gi|123030016|sp|Q0HN76|RHLB_SHESM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|123326096|sp|Q0HQL1|RHLB_SHESR RecName: Full=ATP-dependent RNA helicase rhlB
 gi|113883439|gb|ABI37491.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
 gi|113890543|gb|ABI44594.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 439

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 139/430 (32%), Positives = 224/430 (52%), Gaps = 13/430 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L P+V  A+ + G+   TPIQ  ++P++LQ  D+ G AQTGTGKT +F++    
Sbjct: 10  KFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      ++  PR +I+ PTRELA Q+A +     K+ +L V ++ GG  ++ Q K
Sbjct: 70  HLLSTPIPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYGGESYDVQRK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+LI T GRI+D+  +G + +N I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLDQGVDILIGTTGRIIDYVRQGIISLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T  ++     +            +   +T ++     +    +    L  
Sbjct: 190 DQRLNMLFSATLSMKVQELAYDHMND-PVKVEIAPEEKTSKNIKEEIFYPSQEDKIRLLL 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +D  +  I+F N K +  NL   LE  G  V  + G++ Q+ R++IL  F +G + 
Sbjct: 249 TLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDI----AQHNHARKNNPIPQKSTGFDRR 409
            AIE  I   +   N D    L  + PP++        A++   R     PQ +     R
Sbjct: 369 PAIESYINHSIPVSNYDRDALLDDIPPPVKIHRKHPAGARNLRERSGAGRPQGAHRSGGR 428

Query: 410 KKNYSSQKSH 419
              +   +  
Sbjct: 429 PPRHDRTRRQ 438


>gi|228958720|ref|ZP_04120433.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800935|gb|EEM47839.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 458

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 141/410 (34%), Positives = 229/410 (55%), Gaps = 11/410 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           EK +   +     +     P ++++D       +       ++   D R+
Sbjct: 360 EKTLGAPIQREIIE----QPKIKRVDENGKPIPKPAPKKSGQNRQRDSRE 405


>gi|229044202|ref|ZP_04191878.1| ATP-dependent RNA helicase [Bacillus cereus AH676]
 gi|229145047|ref|ZP_04273440.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST24]
 gi|228638368|gb|EEK94805.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST24]
 gi|228725143|gb|EEL76424.1| ATP-dependent RNA helicase [Bacillus cereus AH676]
          Length = 458

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 141/410 (34%), Positives = 229/410 (55%), Gaps = 11/410 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           EK +   +     +     P ++++D       +       ++   D R+
Sbjct: 360 EKTLGAPIQREIIE----QPKIKRVDENGKPVPKPAPKKSGQNRQRDSRE 405


>gi|84393955|ref|ZP_00992695.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus 12B01]
 gi|84375399|gb|EAP92306.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus 12B01]
          Length = 421

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 128/371 (34%), Positives = 201/371 (54%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L L+ +++ A+ + GY +PT IQ + IP  L   DV   A TGTGKTASFVLP L 
Sbjct: 4   TFAELDLNQELLKAIDEMGYERPTQIQAEAIPQALDGRDVLASAPTGTGKTASFVLPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L     +   P  + IL PTRELA Q+ +   +  K  +L +  + GG+ ++     L 
Sbjct: 64  YLLDFPRKKSGPARMLILTPTRELAMQITEQARELAKYTSLNIFTITGGVMYQEHADILS 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR++++    +     IE LV+DEADRMLDMGF P +  +++   + +QT
Sbjct: 124 TTQDIVVATPGRLMEYIEGERFDCRAIEWLVLDEADRMLDMGFGPVVDRLSAECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     ++  +E+ L+NP  I+  +     + I   +    +   K   L     
Sbjct: 184 LLFSATLEGKGIEGFTEDLLKNPAEIDAKSSLRERKKITQWYHRADSAKHK---LNILKH 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  IIF   +  +  L   LE        I G + Q  R   +S F++G+I ++
Sbjct: 241 IITEQAERSIIFLKTRDRLGELRAQLESAQIPCVWIQGEMPQDRRNNAISRFRDGSINVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A +++   D   I+ 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAVSIIEAHDQLMIER 360

Query: 360 IEKLIEKKVDW 370
           + +  E  +  
Sbjct: 361 VARYTEDAIKE 371


>gi|257092638|ref|YP_003166279.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045162|gb|ACV34350.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 481

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 9/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLS ++  AV D GY +PTP+Q + IP++L   DV   AQTGTGKTA F LP+L 
Sbjct: 4   SFALLGLSAELTRAVDDQGYSEPTPVQAQAIPVILAGRDVLAGAQTGTGKTAGFTLPLLQ 63

Query: 62  ILEKGRARVRMPRTL------ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            L    A   +P         IL PTRELAAQ+ ++   YGK   L   L+ GG+    Q
Sbjct: 64  RLATRAAPAGVPGQRSPVRALILTPTRELAAQIEESVRTYGKYLPLKSTLIYGGVNINPQ 123

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG D+L+ TPGR+LDH  +  + +  +EILV+DEADRMLDMGFI  I+ I +L+P
Sbjct: 124 IDALRRGVDILVATPGRLLDHLQQKTVSLAQVEILVLDEADRMLDMGFIRDIRRILALLP 183

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT ++E++K+++  L  P  +EV   ++ +E +        +   ++    
Sbjct: 184 AKRQNLLFSATFSNEIRKLADGLLHAPAMVEVARRNAESELVAQRVHPVDSWRKRELLTH 243

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                +    +  ++F   K     L   L K G    AIHGN  Q +R + L+ FK GT
Sbjct: 244 L---VASGDWRQVLVFTRMKSGANRLAEQLCKVGIEATAIHGNKSQPARTRALAGFKAGT 300

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGLDI ++ HV NF++P+  E+Y+HRIGRTGRAG  G+A +LV+ E+  
Sbjct: 301 VRVLVATDIAARGLDIEELPHVVNFELPHVPEDYVHRIGRTGRAGSTGEAISLVSPEERP 360

Query: 356 HIDAIEKLIEKKVD 369
            +  IEKL+ +++D
Sbjct: 361 LLADIEKLLTRRID 374


>gi|164424171|ref|XP_962960.2| ATP-dependent RNA helicase dbp-2 [Neurospora crassa OR74A]
 gi|157070404|gb|EAA33724.2| ATP-dependent RNA helicase dbp-2 [Neurospora crassa OR74A]
          Length = 546

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 129/382 (33%), Positives = 209/382 (54%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 117 TFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 176

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 177 HINAQPLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQIRDL 236

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 237 SRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 296

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ-- 237
           TL++SAT   E++ ++ +FL +  ++ + +    A       V   ++  K+  +++   
Sbjct: 297 TLMWSATWPKEVRNLAADFLTDFIQVNIGSMDLAANHRITQIVEVVSESEKRDRMIKHLE 356

Query: 238 -LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +++ ++     +IF   K+   ++   L + G+   +IHG+  Q  R  +L  FK G  
Sbjct: 357 KIMEGRENQNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKS 416

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +MVA+D+A+RG+D+ ++ HV N+D PN +E+YIHRIGRTGRAG  G A T    ++ K 
Sbjct: 417 PIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSKQ 476

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
              +  ++++    ++  L+ +
Sbjct: 477 ARELVGVLQEAKQQIDPRLAEM 498


>gi|149036001|gb|EDL90667.1| rCG38846 [Rattus norvegicus]
          Length = 497

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 158/446 (35%), Positives = 233/446 (52%), Gaps = 17/446 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L LS  +V      G  +PTP+Q+  IP +L+  D  G A+TG+GKTA+FVLP+L  
Sbjct: 4   FAELRLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PTRELA Q+A+ F   GK   L   +++GG+    Q  +L R 
Sbjct: 64  LSE---DPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSRK 120

Query: 123 ADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI---QNITSLVPFTR 178
             V+I TPGR      +     M  I  LV+DEADR+L+ G   +    + I S VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQ 237
           QTLLFSAT+TD L+++       P   E      T E ++  ++             L Q
Sbjct: 181 QTLLFSATLTDTLKELQGLATNQPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVHLVQ 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             Q Q    + IIF N  K    LC  L K  F   A+H  + Q+ R   L+ FK  T +
Sbjct: 241 TFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALARFKSSTYR 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G+A TLV + DI  +
Sbjct: 301 ILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLL 360

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK-NYSSQ 416
            AIE+ I++++  L  + + +   L      Q N  R+   I  +++ FD +K+ N   Q
Sbjct: 361 HAIEEEIKQQLAELAVEEAQVLQIL-----TQVNVVRRECEIKLEASHFDEKKEINKRKQ 415

Query: 417 ---KSHIPLKESEKISKLQQDIQEND 439
              +   P  E+++ ++L +  Q+N 
Sbjct: 416 MILEGKDPDLEAKRKAELAKIKQQNR 441


>gi|91206541|sp|Q7SBC6|DBP2_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-2
          Length = 562

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 129/382 (33%), Positives = 209/382 (54%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 133 TFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 192

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 193 HINAQPLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQIRDL 252

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 253 SRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 312

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ-- 237
           TL++SAT   E++ ++ +FL +  ++ + +    A       V   ++  K+  +++   
Sbjct: 313 TLMWSATWPKEVRNLAADFLTDFIQVNIGSMDLAANHRITQIVEVVSESEKRDRMIKHLE 372

Query: 238 -LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +++ ++     +IF   K+   ++   L + G+   +IHG+  Q  R  +L  FK G  
Sbjct: 373 KIMEGRENQNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKS 432

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +MVA+D+A+RG+D+ ++ HV N+D PN +E+YIHRIGRTGRAG  G A T    ++ K 
Sbjct: 433 PIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSKQ 492

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
              +  ++++    ++  L+ +
Sbjct: 493 ARELVGVLQEAKQQIDPRLAEM 514


>gi|27376558|ref|NP_768087.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA
           110]
 gi|27349699|dbj|BAC46712.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA
           110]
          Length = 530

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 166/427 (38%), Positives = 239/427 (55%), Gaps = 17/427 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL+  +  A+ +  YV PTPIQ +TIP  L   DV GIAQTGTGKTASF LP+L 
Sbjct: 17  SFQDFGLAEPIARALSEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPILH 76

Query: 62  ILEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L + R + +   T +L   PTREL+ Q+ D+F  YG++  L+  L IGG+P   Q + L
Sbjct: 77  RLLEHRIKPQPKTTRVLVLSPTRELSGQILDSFNAYGRHIRLSSTLAIGGVPMGRQVRSL 136

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G +VL+ TPGR+LD      L + ++E LV+DEADRMLDMGFI  I+ I + +P  RQ
Sbjct: 137 MQGVEVLVATPGRLLDLVQSNGLKLGSVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQ 196

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM  ++ +++++ L++P R+ V   SSTAE I    +                L
Sbjct: 197 TLFFSATMPKDIAELADSMLRDPARVAVTPVSSTAERINQRILQVDFSAK---PAFLTKL 253

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              + +   ++F   K     +  +LEK G +  AIHGN  Q  R + L+ F+ G I+ +
Sbjct: 254 LKDEPINRALVFTRTKHGADKVVKTLEKAGIAASAIHGNKSQNHRERTLAQFRSGDIRTL 313

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           VA+D+AARG+D+  + HV NFD+PN  E Y+HRIGRT RAG  G A +LVA  E++ ++ 
Sbjct: 314 VATDIAARGIDVDGITHVINFDLPNVPETYVHRIGRTARAGAEGTAISLVAGGEELSYLR 373

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDI----AQHNHARKNNP--IPQKSTGFDRRKKN 412
            IE+LI+  +         L     + D     +Q    R   P   PQ +   +R    
Sbjct: 374 DIERLIKVALPR-----EDLRTDAGRRDAGPPPSQQRQGRPGRPGQRPQGARHGERHGDG 428

Query: 413 YSSQKSH 419
             + + H
Sbjct: 429 RRTDERH 435


>gi|320323321|gb|EFW79409.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327518|gb|EFW83530.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330876701|gb|EGH10850.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 559

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 150/386 (38%), Positives = 234/386 (60%), Gaps = 9/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++  +     P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPSKRE---PQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++PK +++ T + T   IE   +  +A       L       
Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL---E 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKI 385
           ++  +KV    L    + L+  ++K+
Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKL 387


>gi|257482687|ref|ZP_05636728.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289626949|ref|ZP_06459903.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649408|ref|ZP_06480751.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330866127|gb|EGH00836.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330889311|gb|EGH21972.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330986634|gb|EGH84737.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 559

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 150/386 (38%), Positives = 234/386 (60%), Gaps = 9/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++  +     P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPSKRE---PQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++PK +++ T + T   IE   +  +A       L       
Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL---E 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKI 385
           ++  +KV    L    + L+  ++K+
Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKL 387


>gi|170100080|ref|XP_001881258.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164643937|gb|EDR08188.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 442

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 116/376 (30%), Positives = 189/376 (50%), Gaps = 7/376 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D+ L  +++  + +AG+ KP+PIQ + IP+ L + D+   A+ GTGKTA+FV+P L
Sbjct: 28  IEFEDMFLRRELLMGIFEAGFEKPSPIQEEAIPIALTKRDILARAKNGTGKTAAFVIPSL 87

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  + +++    L+L PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 88  QQIDITKNKIQA---LLLVPTRELALQTSQVCKTLGKHMGVQVMVTTGGTTLKDDILRLS 144

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               VL+ TPGRILD   +    +    + V+DEAD++L   F P ++ + S +P  RQ 
Sbjct: 145 ESVHVLVGTPGRILDLAGKNVADLTECPVFVMDEADKLLSPEFAPVMEQLLSYLPTERQV 204

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F                 T+            ++       L 
Sbjct: 205 MLFSATFPMIVKD----FKDKHMNSPYEINLMDELTLRGVTQYYAYVEERQKVHCLNTLF 260

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q  R ++  +F+ G  + +V
Sbjct: 261 SKLQINQSIIFCNSTNRVELLAKKVTELGYSCFYSHAKMLQSHRNRVFHDFRNGVCRNLV 320

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  LV  ED  ++  I
Sbjct: 321 CSDLLTRGIDIQAVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINLVTYEDRFNLYKI 380

Query: 361 EKLIEKKVDWLNGDLS 376
           E+ +  ++  +  ++ 
Sbjct: 381 EQELGTEIQPIPQNID 396


>gi|71734200|ref|YP_275777.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554753|gb|AAZ33964.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 570

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 150/386 (38%), Positives = 234/386 (60%), Gaps = 9/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 19  FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++  +     P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 79  IDPSKRE---PQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 135

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 136 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 195

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++PK +++ T + T   IE   +  +A       L       
Sbjct: 196 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL---E 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 253 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 313 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 372

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKI 385
           ++  +KV    L    + L+  ++K+
Sbjct: 373 RVTGQKVAEVRLPDAQAVLDARIKKL 398


>gi|302891875|ref|XP_003044819.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256725744|gb|EEU39106.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 551

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 207/380 (54%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 137 TFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPSIV 196

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+    +K+G++  +    + GG+P   Q + L
Sbjct: 197 HINAQPLLAPGDGPIVLVLAPTRELAVQIKQEIDKFGRSSRIRNTCVYGGVPKGPQIRDL 256

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 257 SRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQ 316

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E++ ++ +FLQ+  ++ + +    A       V       K+  +++ L 
Sbjct: 317 TLMWSATWPKEVRALATDFLQDFIQVNIGSMDLAANHRITQIVEVVTDMEKRDRMIKHLE 376

Query: 240 QSQDTMKNGIIFCNQKKNV-VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +  +N I+     K V  ++   L + G+   +IHG+  Q  R  +L  FK     +
Sbjct: 377 KVMENKENKILIFVGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKSAKSPI 436

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ ++ HV N+D PN +E+YIHRIGRTGRAG  G A T    ++ K   
Sbjct: 437 MVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNQKQAR 496

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++++    ++  L  +
Sbjct: 497 DLVNVLQEAKQQIDPRLVEM 516


>gi|149275912|ref|ZP_01882057.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
 gi|149233340|gb|EDM38714.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
          Length = 443

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 155/417 (37%), Positives = 238/417 (57%), Gaps = 14/417 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  L+ +++ AV DAG+   TPIQ K I  VL   D+ GIA+TGTGKTA++VLP+L 
Sbjct: 4   SFEEFNLNRQILNAVADAGFTVATPIQEKAIAPVLSGQDLFGIAETGTGKTAAYVLPILM 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+  +      R LIL PTRELA Q+ ++ + +    +L   ++ GGI  + Q ++++ 
Sbjct: 64  QLKYAQGDSA--RALILAPTRELAMQITEHIKVFSTYLDLRTVVIFGGIGPKTQIEQIKA 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR LD +  G +    ++ LV+DEAD+M+DMGFI  I  I  +VP  RQ L
Sbjct: 122 GVDIIVATPGRFLDIYLAGHINTQYLKFLVLDEADKMMDMGFIGSIHRILEVVPRKRQNL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM+  +QK++ +FL++P  +EV   ++ A+T+            K    L Q L  
Sbjct: 182 LFSATMSSLVQKIAGDFLKHPTIVEVAEQATPAQTVTQTLYEVPNF--KTKINLLQHLMK 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC---AIHGNIDQRSRMKILSNFKEGTIQL 298
            D     +I   + K V +   S  ++ F       IH N  Q +R+  +++FKEG I++
Sbjct: 240 NDEEFKRVIIFCKTKTVADNIFSFIERRFGADAVRVIHANKGQNTRINSINDFKEGNIRV 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RG+D+ +V HV NFDVP   E+Y+HRIGRTGRA   G A T     +  +I 
Sbjct: 300 LVATDVASRGIDVSEVSHVINFDVPIIIEDYVHRIGRTGRALSKGDALTFFTDAEKYYIK 359

Query: 359 AIEKLIEKKVDW--LNGDLSSLNPPLEK---IDIAQHNHARKNNPIPQKSTGFDRRK 410
            IEKLI +++    L  ++     P E+   I+ A  +  RK +P  +    F  +K
Sbjct: 360 KIEKLIRQEIPVVPLPAEVFVEETPYEERQAINRAIDDQKRKEDPTFK--GAFHEKK 414


>gi|117621455|ref|YP_855288.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117562862|gb|ABK39810.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 416

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 165/415 (39%), Positives = 232/415 (55%), Gaps = 11/415 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL LSP++   + + GY  PTP+Q   IP++L   D+   AQTGTGKTA+FVLP+L 
Sbjct: 5   SFADLALSPRLQQTLTELGYAAPTPVQASAIPVILAGRDLMAGAQTGTGKTAAFVLPLLE 64

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                      R  R L+L PTRELA QV ++  +Y K  +LT  L+ GG+   AQ + L
Sbjct: 65  QLLQNPTNDAPRPIRALVLVPTRELAIQVHESVTRYAKGTDLTSTLVYGGVSIAAQVEAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D+LI TPGR+LDH  +G L +  +  LV DEADRMLDMGF+  I+ +   +P  RQ
Sbjct: 125 KAGVDILIATPGRLLDHLRQGALSLAALHHLVFDEADRMLDMGFMDEIKELLKQIPADRQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  D L  +S+  L +P+ IEV   ++TA  +E                  + +
Sbjct: 185 TLLFSATCDDNLFALSKVLLHDPELIEVAPRNTTAAEVEQRVYTVDGDRKLAL---VEHM 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       +IF   ++    L   L K G +  A HG++ Q +R K+L  F+ GT+Q +
Sbjct: 242 LNVKGWAPALIFSRTRQGADKLAQQLGKAGINALAFHGDLSQGAREKVLLEFRAGTLQAL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI D+ +V N + P  AE+Y+HRIGRTGRAG  G A TL + ED   ++ 
Sbjct: 302 VATDVAARGLDISDLNYVINMEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEK 361

Query: 360 IEKLIEKKV--DWLNG---DLSSLNP-PLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           +E +++ ++   W  G   DL+   P P      AQ   ARK      K +   R
Sbjct: 362 VEAVLDTRLPQQWFPGFEPDLTRFEPEPRRSSKAAQKQRARKQALAGNKGSKARR 416


>gi|321262460|ref|XP_003195949.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
 gi|317462423|gb|ADV24162.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
          Length = 484

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 142/393 (36%), Positives = 220/393 (55%), Gaps = 7/393 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+SP++  A    G+ KP+ IQ + IP  L+  D+ G+AQTG+GKTA+F LP+L 
Sbjct: 39  SFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +     +    L+L PTRELA Q++      G    +  A+L+GG+   +Q+  L +
Sbjct: 99  TLWEN---PQPFFALVLAPTRELAYQISQQITSLGSGIGVRTAVLVGGMDMMSQSIALSK 155

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR++DH  N     + +++ LV+DEADR+LD+ F P I  +  ++P  R T
Sbjct: 156 RPHVIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKVLKVIPKERNT 215

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+    L  P R+EV++  ST  T+            K        L 
Sbjct: 216 YLFSATMTTKVAKLQRASLNKPVRVEVSSKYSTVSTL---LQHYLLLPLKNKDSYLLYLA 272

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++ +  + IIF     +   L   L + GF    +HG + Q  R+  L+ FK G   ++V
Sbjct: 273 NELSSSSMIIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGRSILV 332

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V N+D+P  +++Y+HR+GRT RAGR GK+ TLV + D++ +  I
Sbjct: 333 ATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEILQRI 392

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           E  I KK+   + D  ++    + +  A    A
Sbjct: 393 ESHIGKKMTSFDVDKEAVALLTDTVARANREAA 425


>gi|229826321|ref|ZP_04452390.1| hypothetical protein GCWU000182_01693 [Abiotrophia defectiva ATCC
           49176]
 gi|229789191|gb|EEP25305.1| hypothetical protein GCWU000182_01693 [Abiotrophia defectiva ATCC
           49176]
          Length = 522

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 136/407 (33%), Positives = 224/407 (55%), Gaps = 17/407 (4%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           + L  +++ AV + GY + TPIQ + IP+ +   D+ G AQTGTGKTA+F +P+L  ++ 
Sbjct: 1   MQLDERILKAVKELGYEEATPIQTEAIPVAITGRDILGQAQTGTGKTAAFSIPILNNIDS 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLERGAD 124
           G   ++     +L PTRELA QV     K  +  +    + +  G     Q K L++GA 
Sbjct: 61  GNKHLQAV---VLCPTRELALQVCGEIRKLSRYMHGIKLVPVYGGQDIVKQIKSLKQGAQ 117

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGR++DH  R  +  + ++I+V+DEAD MLDMGF   I+ I + VP  RQT+LFS
Sbjct: 118 IIVGTPGRVMDHMRRKTVKFDQVKIMVLDEADEMLDMGFRDDIETILAEVPEERQTMLFS 177

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           ATM   +  ++  + +  + I++     T E IE  +      Y  +       +     
Sbjct: 178 ATMPKPILDITRKYQKKAQNIKIAKKELTVENIEQYYYEVRRNYKDEI---LSRILDMYN 234

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            +  I+FCN KK V  + + L+ +G+    +HG++ Q+ R +++ NF+ G  +++VA+D+
Sbjct: 235 PELSIVFCNTKKKVEEVANELQGRGYFAEGLHGDLKQQQRDRVMGNFRNGKTEILVATDV 294

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           AARG+D+  V  V N+D+P   E Y+HRIGRTGRAG+ G A + V+ +++  +  I++  
Sbjct: 295 AARGIDVKGVDLVINYDLPQDDEYYVHRIGRTGRAGKAGLALSFVSGKEVYKLKEIQRYC 354

Query: 365 EKKV---------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
             K+         D  N  + SL   L +I I   +  +    I QK
Sbjct: 355 HTKIRLKPVPSLDDVTNTRVDSLFDELSEI-IENEDLTKMTELIEQK 400


>gi|154688021|ref|YP_001423182.1| DbpA [Bacillus amyloliquefaciens FZB42]
 gi|154353872|gb|ABS75951.1| DbpA [Bacillus amyloliquefaciens FZB42]
          Length = 479

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 137/410 (33%), Positives = 226/410 (55%), Gaps = 13/410 (3%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F +  +SP++  A+    Y +PT +Q + IP  LQ+ D+   +QTG+GKTA+F +P+
Sbjct: 1   MNEFNEYAISPEIRRALNGLQYTEPTEVQRRVIPAALQKKDLVVKSQTGSGKTAAFGIPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + E    +   P+ LIL PTRELAAQ+ ++    G+   +    + G   F+ Q  +L
Sbjct: 61  CELAEWEENK---PQALILTPTRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQKTEL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++ + V+  TPGR+LDH  +G L +  +  +VIDEAD ML+MGFI  ++ I   +P  R 
Sbjct: 118 KQKSHVVAGTPGRVLDHIEKGTLPLERLAYVVIDEADEMLNMGFIEQVEAIIQHLPKNRV 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT+ D+++K+S  ++++P+ IEV     T + IEH          +    L + +
Sbjct: 178 TMLFSATLPDDVEKLSRTYMKDPELIEVKAEGLTTKDIEH---FVTRTEEEDKTSLLRDV 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +   + IIFC  K+ V+ L   L++ G+    IHG + Q  R  +++ FK G  + +
Sbjct: 235 LITENPDSCIIFCRTKERVIQLTDELDRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI ++  V N+D+P   E+Y+HR GRTGRAG  G+A T V   + + ++ 
Sbjct: 295 IATDVAARGIDIENISLVINYDIPLEKESYVHRTGRTGRAGHRGRAITFVTPFEARFLND 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           IE  I  ++           P  ++    +   A K N  P   T    +
Sbjct: 355 IETYIGFRIQKREA------PSEKETAERKAAFAEKLNARPDVKTDKSEQ 398


>gi|317970363|ref|ZP_07971753.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0205]
          Length = 598

 Score =  163 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 142/371 (38%), Positives = 219/371 (59%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G SP+++ A+ + GY +P+PIQ   IP ++   D+ G AQTGTGKTA+F LPML  
Sbjct: 33  FAAFGFSPEILEALEEIGYSEPSPIQAAAIPELMLGRDLVGQAQTGTGKTAAFALPMLAA 92

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKLER 121
           L++ +   R P+ L+L PTRELA QVAD+F+ Y         L + G   F  Q  KL+R
Sbjct: 93  LDETQ---RTPQVLVLTPTRELAIQVADSFKSYATKLPHLRVLPVYGGSDFRDQIHKLKR 149

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  +G L ++ +  LV+DEAD ML MGFI  ++ + S +P  RQ +
Sbjct: 150 GVQVVVGTPGRVMDHMRQGTLDVSGLRSLVLDEADEMLRMGFIDDVEWVLSQLPEKRQVV 209

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++S  +L +P  I + T  S +  I+  F+                +  
Sbjct: 210 LFSATMPSEIRRISHQYLNSPAEITIKTKGSDSSRIQQRFITVNGPMK---LEALSRVLE 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +T +  IIF   K   V +  +LE +G+ V  ++G++ Q  R + +   K GT+ ++VA
Sbjct: 267 AETKEGVIIFARTKAITVTVAEALEAKGYGVAVLNGDVAQSQRERTIERLKNGTVDVLVA 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D+P  +E Y+HRIGRTGRAGR G A   V   + + I  +E
Sbjct: 327 TDVAARGLDVDRISLVINYDIPFDSEAYVHRIGRTGRAGRTGNAILFVTPRERRFITGLE 386

Query: 362 KLIEKKVDWLN 372
           + + + ++ + 
Sbjct: 387 RAVGRPIEPME 397


>gi|298483821|ref|ZP_07001993.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           D22]
 gi|298270008|gb|EFI11597.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           D22]
          Length = 643

 Score =  163 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 156/482 (32%), Positives = 255/482 (52%), Gaps = 43/482 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP+L
Sbjct: 3   TFEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++    + R+P++LIL PTREL  Q+A +   Y K  +    L + G    ++Q + L
Sbjct: 63  QQIDV---KNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD   R  + ++ I  +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KRGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTDSINAILADVPQERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+N+L+N K I +   +   E+  +     Y   +K      + +
Sbjct: 180 TLLFSATMSPEIARISKNYLRNAKEITIGRKN---ESTNNVKHVVYTVQAKDKYEALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+
Sbjct: 237 VDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRICNLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKLRE 356

Query: 360 IEKLIEKKVDWLNGDLS-----------SLNPPLEKIDIAQHNHARKNNPIPQK------ 402
           IE++I KK  ++ G++             +   LEK+ + +   A     I +K      
Sbjct: 357 IERIIGKK--FITGEMPTAAGICQKQLIKVIDDLEKVKVNEEEIAGFMPEIYRKLEWLSK 414

Query: 403 --------STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGF----RGNMP 450
                   S  F+R    ++    H P  E   I    +  +++D    GF    R   P
Sbjct: 415 EDLIKRVVSHEFNR----FAEYYRHRPEIEQPTIESRSERARKSDRKENGFEKRSRKAAP 470

Query: 451 AF 452
            F
Sbjct: 471 GF 472


>gi|195457392|ref|XP_002075549.1| GK21209 [Drosophila willistoni]
 gi|194171634|gb|EDW86535.1| GK21209 [Drosophila willistoni]
          Length = 457

 Score =  163 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 109/375 (29%), Positives = 188/375 (50%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L  +++  + + G+ +P+PIQ   IP+ L   DV   A+ GTGKT ++ +P+L 
Sbjct: 57  EFEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLE 116

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + L++ PTRELA Q +    +  K+ ++ V +  GG   +    ++ +
Sbjct: 117 QIDPT---KDYIQALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQ 173

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD  ++    M++ +ILV+DEAD++L + F   + ++   +P   Q L
Sbjct: 174 KVQLIIATPGRILDLMDKKVADMSHCKILVLDEADKLLSLDFQGMLDHVILKLPKDPQIL 233

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F++   R           T++           ++       L S
Sbjct: 234 LFSATFPLTVKN----FMEKHLREPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFS 289

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+    IH  + Q  R ++  +F++G  + +V 
Sbjct: 290 KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVC 349

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  IE
Sbjct: 350 SDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIE 409

Query: 362 KLIEKKVDWLNGDLS 376
           K +  ++  +   + 
Sbjct: 410 KELGTEIKPIPKVID 424


>gi|195387443|ref|XP_002052405.1| GJ17531 [Drosophila virilis]
 gi|194148862|gb|EDW64560.1| GJ17531 [Drosophila virilis]
          Length = 459

 Score =  163 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 109/375 (29%), Positives = 188/375 (50%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L  +++  + + G+ +P+PIQ   IP+ L   DV   A+ GTGKT ++ +P+L 
Sbjct: 59  EFEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLE 118

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + L++ PTRELA Q +    +  K+ ++ V +  GG   +    ++ +
Sbjct: 119 QIDPT---KDYIQALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQ 175

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD  ++    M++ +ILV+DEAD++L + F   + ++   +P   Q L
Sbjct: 176 KVQLIIATPGRILDLMDKKVADMSHCKILVLDEADKLLSLDFQGMLDHVILKLPKDPQIL 235

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F++   R           T++           ++       L S
Sbjct: 236 LFSATFPLTVKN----FMEKHLREPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFS 291

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+    IH  + Q  R ++  +F++G  + +V 
Sbjct: 292 KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVC 351

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  IE
Sbjct: 352 SDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIE 411

Query: 362 KLIEKKVDWLNGDLS 376
           K +  ++  +   + 
Sbjct: 412 KELGTEIKPIPKVID 426


>gi|195119205|ref|XP_002004122.1| GI18279 [Drosophila mojavensis]
 gi|193914697|gb|EDW13564.1| GI18279 [Drosophila mojavensis]
          Length = 459

 Score =  163 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 109/375 (29%), Positives = 188/375 (50%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L  +++  + + G+ +P+PIQ   IP+ L   DV   A+ GTGKT ++ +P+L 
Sbjct: 59  EFEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLE 118

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + L++ PTRELA Q +    +  K+ ++ V +  GG   +    ++ +
Sbjct: 119 QIDPT---KDYIQALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQ 175

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD  ++    M++ +ILV+DEAD++L + F   + ++   +P   Q L
Sbjct: 176 KVQLIIATPGRILDLMDKKVADMSHCKILVLDEADKLLSLDFQGMLDHVILKLPKDPQIL 235

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F++   R           T++           ++       L S
Sbjct: 236 LFSATFPLTVKN----FMEKHLREPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFS 291

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+    IH  + Q  R ++  +F++G  + +V 
Sbjct: 292 KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVC 351

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  IE
Sbjct: 352 SDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIE 411

Query: 362 KLIEKKVDWLNGDLS 376
           K +  ++  +   + 
Sbjct: 412 KELGTEIKPIPKVID 426


>gi|2500517|sp|Q40471|IF4A9_TOBAC RecName: Full=Eukaryotic initiation factor 4A-9; Short=eIF-4A-9;
           AltName: Full=ATP-dependent RNA helicase eIF4A-9
 gi|485951|emb|CAA55736.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score =  163 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 194/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  SFDAMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     +   + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 101 QLDY---ELLDCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSS 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G +   V  +D + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTSDDERMLSDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ L  +++ L
Sbjct: 396 RFYNVVIEELPANVADL 412


>gi|307823524|ref|ZP_07653753.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307735509|gb|EFO06357.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 419

 Score =  163 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 150/373 (40%), Positives = 217/373 (58%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ DAGY  P+PIQ + IP VL  HDV   AQTGTGKTA F LP+L
Sbjct: 1   MPFTTLGLSDPLLRAIADAGYTTPSPIQSQAIPAVLGGHDVLAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGG--IPFEAQNK 117
             L +       P  + IL PTRELAAQ+ ++  KYG + +  +   +    +    Q  
Sbjct: 61  HRLSQKAYGNNRPVRVLILTPTRELAAQIGESVNKYGAHLHPRLKSEVVFGGVKINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G D+L+ TPGR+LD  N+  + ++ +E L++DEADRMLDMGFI  I+ I + +P  
Sbjct: 121 RLRGGVDILVATPGRLLDLVNQNAVKLDQVETLILDEADRMLDMGFIRDIRKIIAFLPKK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +++++K++   L NP +IEV   ++ AE +E            +      
Sbjct: 181 RQNLLFSATFSEDIRKLTTGLLVNPIKIEVAPRNTAAELVEQVAYLVNKANKTELLCHL- 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               +   +  ++F   K     L   L K      AIHGN  Q +R   LS FK G I+
Sbjct: 240 --IKEHDWQQVLVFTTTKHGANRLTEKLNKVDIKAAAIHGNKSQGARTSALSGFKAGEIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  + HV NF++P   E+Y+HRIGRTGRAG  G+A +LV+ ++   +
Sbjct: 298 VLVATDVAARGIDINLLPHVVNFELPRAPEDYVHRIGRTGRAGEEGQAISLVSHDEYSFL 357

Query: 358 DAIEKLIEKKVDW 370
             +EKLI K++  
Sbjct: 358 RLVEKLIGKEIKR 370


>gi|296191894|ref|XP_002743821.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like
           [Callithrix jacchus]
          Length = 650

 Score =  163 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 206/379 (54%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 214 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL++  +I V     +A       V    +  K   L+Q + +
Sbjct: 274 LMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 333

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    
Sbjct: 394 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 453

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E+    +N  L  L
Sbjct: 454 LIKVLEEANQAINPKLMQL 472


>gi|218777997|ref|YP_002429315.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759381|gb|ACL01847.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 567

 Score =  163 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 130/421 (30%), Positives = 223/421 (52%), Gaps = 17/421 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPM 59
           MDF  LGLS ++  AV   G+ KPTPIQ K IP +++   D  G+AQTGTGKT ++ LP+
Sbjct: 1   MDFRILGLSDELARAVESLGFEKPTPIQEKAIPYLIEGERDFVGLAQTGTGKTGAYGLPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
           +  ++    R   P+ +++ PTREL  Q+A +   + K   ++ VA + GG     Q + 
Sbjct: 61  IQSIDLSIPR---PQAIVICPTRELCLQIAGDLRDFAKYMEDIRVAAVYGGADIVKQIRT 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++ GA ++  TPGR+LD  NR  +   ++  +V+DEAD ML+MGF   I  I S +P  R
Sbjct: 118 VKGGAQIIAATPGRLLDLINRKAIKPGHVTRVVLDEADEMLNMGFQEDINAILSSLPDER 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +T LFSATM   +  ++  +  NP  + +   +  +  I H     Y  ++K      + 
Sbjct: 178 RTWLFSATMPKGVAAIAAKYQTNPVEVTMGGRNQASPDISH---ICYMIHAKNRYAALKR 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +        G++FC  +K+   +  +L   G++  A+HG++ Q  R +++  F+   +Q+
Sbjct: 235 ILDYCPDMFGLVFCRTRKDTQEIAEALMADGYNADALHGDLSQPQRDQVMGRFRRKAVQV 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+AARGLD+ D+ HV ++ +P+  E Y HR GRT RAG+ GK+  L+   +   + 
Sbjct: 295 LAATDVAARGLDVDDISHVIHYVLPDDPEAYTHRSGRTARAGKQGKSIALITPRENYRLK 354

Query: 359 AIEKL---------IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            +E+          + +  D     ++ L   L  + + +++ A     I +   G  R 
Sbjct: 355 DLERRGKFSFQLDSLPQGRDICQKQVAGLAEKLASVSVRENDIAEYMPDILEAFEGLSRE 414

Query: 410 K 410
           +
Sbjct: 415 E 415


>gi|150003861|ref|YP_001298605.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482]
 gi|254880913|ref|ZP_05253623.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA]
 gi|294775017|ref|ZP_06740546.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
 gi|319639922|ref|ZP_07994650.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A]
 gi|149932285|gb|ABR38983.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482]
 gi|254833706|gb|EET14015.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA]
 gi|294451061|gb|EFG19532.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
 gi|317388461|gb|EFV69312.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A]
          Length = 624

 Score =  163 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 131/368 (35%), Positives = 213/368 (57%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+SP+++ A+ + GY  P P+Q + IP +L   +DV  +AQTGTGKTA+F LP++
Sbjct: 3   TFEELGVSPEILKAIKEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++    + R P+ LIL PTREL  Q+A +   Y K  +    L + G    E+Q + L
Sbjct: 63  QKVDV---KHRAPQALILCPTRELCLQIAGDLNDYSKYIDGLKILPVYGGSSIESQIRML 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  +++ TPGR++D   R    +  I  +V+DEAD ML+MGF   I  I   VP  R 
Sbjct: 120 KTGVHIIVATPGRLIDLIERKVAKLETITDVVMDEADEMLNMGFTDSINAILEKVPEDRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSATM+ E+ ++++ +L + K I + T +   E  ++     Y  ++K      + +
Sbjct: 180 TLMFSATMSPEISRIAKKYLHDAKEITIGTKN---EGSKNVNHIAYLVHAKDKYAALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L + G++  ++HG + Q  R  ++  F++  +QL+
Sbjct: 237 ADYYPQIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRHLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKTGISIAIINLREKGKMRE 356

Query: 360 IEKLIEKK 367
           IE++I KK
Sbjct: 357 IERIINKK 364


>gi|32880087|gb|AAP88874.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 17, 72kDa [synthetic
           construct]
 gi|61372130|gb|AAX43789.1| DEAD box polypeptide 17 [synthetic construct]
 gi|61372139|gb|AAX43790.1| DEAD box polypeptide 17 [synthetic construct]
          Length = 651

 Score =  163 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 206/379 (54%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 214 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL++  +I V     +A       V    +  K   L+Q + +
Sbjct: 274 LMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 333

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    
Sbjct: 394 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 453

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E+    +N  L  L
Sbjct: 454 LIKVLEEANQAINPKLMQL 472


>gi|225442221|ref|XP_002277703.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 413

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 194/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  TFDSMGLVENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     +   + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 101 QLDYS---LVQCQALVLAPTRELAQQIEKVMRALGDYLGVRVHACVGGTSVREDQRILQT 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+   V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLETLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ L  +++ L
Sbjct: 396 RFYNVVIEELPSNVADL 412


>gi|146282848|ref|YP_001173001.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri A1501]
 gi|145571053|gb|ABP80159.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas stutzeri
           A1501]
          Length = 553

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 146/386 (37%), Positives = 231/386 (59%), Gaps = 9/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+   V+ A+   GY +P+PIQ + IP++L  HD+ G AQTGTGKTA+F LP+L+ 
Sbjct: 8   FAALGIHSAVLAAISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAFALPILSK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++  +     P+ LIL PTRELA QVA  FE Y K       + I  G P   Q K + +
Sbjct: 68  IDPAKRE---PQALILAPTRELALQVATAFETYSKQMPGVSVVAIYGGAPMGPQLKAIRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH +R   L++ I  LV+DEAD ML +GF+  ++ I   +P +RQ++
Sbjct: 125 GAQVIVATPGRLVDHLSRNSELLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQSV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L+ P+ I++   + T   IE   +  +A    +  L       
Sbjct: 185 LFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVLRLL---E 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 242 VEDFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKI 385
           ++  +KV    L      L+  ++K+
Sbjct: 362 RVTNQKVAEARLPNAQQVLDARIKKL 387


>gi|86147398|ref|ZP_01065711.1| ATP-dependent RNA helicase SrmB [Vibrio sp. MED222]
 gi|218708540|ref|YP_002416161.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus LGP32]
 gi|85834826|gb|EAQ52971.1| ATP-dependent RNA helicase SrmB [Vibrio sp. MED222]
 gi|218321559|emb|CAV17511.1| ATP-dependent RNA helicase srmB [Vibrio splendidus LGP32]
          Length = 421

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 201/371 (54%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L L+ +++ A+ + GY +PT IQ + IP  L   DV   A TGTGKTASFVLP L 
Sbjct: 4   TFAELDLNQELLKAIDEMGYERPTQIQAEAIPQALDGRDVLASAPTGTGKTASFVLPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L     +   P  + IL PTRELA Q+ +   +  K  +L +  + GG+ ++     L 
Sbjct: 64  YLLDFPRKKSGPARMLILTPTRELAMQITEQARELAKYTSLNIFTITGGVMYQEHADILS 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR++++    +     IE LV+DEADRMLDMGF P +  +++   + +QT
Sbjct: 124 TTQDIVVATPGRLMEYIEGERFDCRAIEWLVLDEADRMLDMGFGPVVDRLSAECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     ++  +E+ L+NP  I+  +     + I   +    +   K         
Sbjct: 184 LLFSATLEGKGIEGFTEDLLKNPAEIDAKSSLRERKKITQWYHRADSAKHKLD---ILKH 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  IIF   +  + +L   LE        I G + Q  R   +S F++G+I ++
Sbjct: 241 IITEQAERSIIFLKTRDRLGDLRAQLESAQIPCVWIQGEMPQDRRNNAISRFRDGSINVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A +++   D   I+ 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAVSIIEAHDQLMIER 360

Query: 360 IEKLIEKKVDW 370
           + +  E  +  
Sbjct: 361 VARYTEDAIKE 371


>gi|302847755|ref|XP_002955411.1| DEAD-box RNA helicase, ATP-dependent [Volvox carteri f.
           nagariensis]
 gi|300259253|gb|EFJ43482.1| DEAD-box RNA helicase, ATP-dependent [Volvox carteri f.
           nagariensis]
          Length = 535

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 131/376 (34%), Positives = 211/376 (56%), Gaps = 3/376 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +      V+  V+ AG+ +PTPIQ +  P+ L   D+ G+A+TG+GKT +++LP + 
Sbjct: 114 SFEEASFPEYVLAEVIRAGFKEPTPIQCQGWPMALLGRDLIGLAETGSGKTLAYLLPAVV 173

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA Q+    +++G +  +   ++ GG P   Q + L
Sbjct: 174 HINAQPYLQPGDGPIVLVLAPTRELAVQIQQECQRFGSSSRIKNTVVYGGAPKGPQARDL 233

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G +++I TPGR++D  +     +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 234 RSGVEIVIATPGRLIDMMDSRVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 293

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLL+SAT   E+Q ++ +FL+NP ++ + +P   A       V     Y+K    L++LL
Sbjct: 294 TLLWSATWPKEVQAIARDFLKNPYQVIIGSPELKANHNIRQIVEMVEGYAKY-PRLRKLL 352

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  +IFC  K+    L   L   G+    +HG+  Q+ R  +L  FK GT  +M
Sbjct: 353 DTEMDGRRILIFCETKRGCDELVRQLRTDGYPALGLHGDKSQQERDWVLQEFKNGTHPIM 412

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+ D+  V N+D+P  AE+Y+HRIGRTGRAG HG A++     D +    
Sbjct: 413 LATDVAARGLDVKDIKVVVNYDMPKTAEDYVHRIGRTGRAGAHGTAYSFFTGADARLARQ 472

Query: 360 IEKLIEKKVDWLNGDL 375
           + +++++       +L
Sbjct: 473 VVEVMQEAGQQPPPEL 488


>gi|2500520|sp|Q40467|IF414_TOBAC RecName: Full=Eukaryotic initiation factor 4A-14; Short=eIF-4A-14;
           AltName: Full=ATP-dependent RNA helicase eIF4A-14
 gi|485943|emb|CAA55742.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 195/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+         + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 101 QLDYSLVE---CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMSKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V K+D + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     ++ L  +++ L
Sbjct: 396 KFYNVVIEELPANVADL 412


>gi|332232745|ref|XP_003265564.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Nomascus
           leucogenys]
          Length = 455

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 136/433 (31%), Positives = 219/433 (50%), Gaps = 7/433 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++  +  A    G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 25  TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++G            +
Sbjct: 85  ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      I    N     +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHVIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++          SK        + 
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ---YYIFIPSKFKDTYLVYIL 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI KK+         +    E++  AQ     +     +K         +    +  I
Sbjct: 379 EYLIGKKLPVFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSREDAGDNDDTEGAI 438

Query: 421 PLKESEKISKLQQ 433
            ++      K+++
Sbjct: 439 GVRNKVAGGKMKK 451


>gi|302387031|ref|YP_003822853.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
 gi|302197659|gb|ADL05230.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
           WM1]
          Length = 485

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 141/422 (33%), Positives = 234/422 (55%), Gaps = 17/422 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  +S  +  A+   GY  PT +Q + IP  L+++D+   AQTG+GKTA++ +P+  
Sbjct: 3   SFRNYIISEDIGKALKGLGYDIPTEVQARVIPAALEKNDLMVKAQTGSGKTAAYAIPICE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ LIL PTRELA QV ++F   G+   L  A + G   F  +  +L++
Sbjct: 63  LIEWLENK---PQALILTPTRELAVQVKEDFTNIGRFKRLKAAAIYGRHSFSMEKAELKQ 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR++DH  +G L +  I  LVIDEADRMLDMGFI  ++ I   +P  R T+
Sbjct: 120 KTHVVVGTPGRVMDHIKKGTLPLTKINYLVIDEADRMLDMGFIKQVEAIMKELPMERMTM 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++ +S +++++P  I+V+  + T   I+H     Y    +    L   +  
Sbjct: 180 LFSATMPQEVKNMSLDYMRDPINIDVSEANITTSDIDH---FLYYVKEEDKFELLNDVMI 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + +IFC+ K  V  +C  L+  G+    +HG ++Q  R+  +  FK G  + ++A
Sbjct: 237 VEKPDSCMIFCSTKDRVDIVCERLKNFGYPCNKMHGGMEQADRLSSIKGFKRGEYRYLIA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+DI  +  V N+D+P   ENY+HR GRTGRAG+ GKA + +     +++  I+
Sbjct: 297 TDLAARGIDIETISMVINYDIPLDKENYVHRPGRTGRAGQKGKAVSFLDPAQTRYLHDIQ 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           +LI   +  L        P  E++ + + +   K N +P       +++K+    K  + 
Sbjct: 357 ELIGFSIQELP------KPAKEEVSVQKPSFDEKMNAVPPI-----KKRKSDQLNKEIMK 405

Query: 422 LK 423
           L+
Sbjct: 406 LR 407


>gi|66046848|ref|YP_236689.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|302187695|ref|ZP_07264368.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Pseudomonas syringae pv. syringae 642]
 gi|63257555|gb|AAY38651.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330972316|gb|EGH72382.1| helicase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 557

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 150/386 (38%), Positives = 234/386 (60%), Gaps = 9/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++  +     P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPSKRE---PQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++PK +++ T + T   IE   +  +A       L       
Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL---E 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKI 385
           ++  +KV    L    + L+  ++K+
Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKL 387


>gi|332969729|gb|EGK08743.1| ATP-dependent RNA helicase RhlE [Kingella kingae ATCC 23330]
          Length = 484

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 157/439 (35%), Positives = 258/439 (58%), Gaps = 13/439 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            F+ LGL  ++V A+ + GY  PTPIQ+  IP  L  HD+   AQTGTGKTA+F+LP   
Sbjct: 31  QFSQLGLGQEIVSALSEQGYETPTPIQLAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLE 90

Query: 59  -MLTILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +        +    P  + +L PTRELA Q+  N + Y KN  L   +L GG+  + Q 
Sbjct: 91  RLKRYANASTSPAMHPMRMLVLTPTRELADQIDQNTKSYIKNLPLRHTVLFGGVSMDKQT 150

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGF+  I+ I  L+P 
Sbjct: 151 ADLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFVDEIRQIMRLLPK 210

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           +RQTLLFSAT   +++K++++F+  P+ IEV   ++T   +E   +A  A   K+     
Sbjct: 211 SRQTLLFSATFAPDIRKLAQDFMHLPETIEVAAQNTTNANVEQHVIAVDAHRKKEL---L 267

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + L     M   I+FC  K++   +   L ++G S  AIHG+  Q++R+++LS FK G +
Sbjct: 268 ERLIVDLNMPQVIVFCKTKQSAEQVARDLLRRGLSANAIHGDKSQQTRLEVLSQFKSGEL 327

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDI ++  V N+++P +AE+Y+HRIGRTGRAG  G A +++ + + K 
Sbjct: 328 RVLVATDVAARGLDIAELPFVINYELPVQAEDYVHRIGRTGRAGAEGVAISMMDETEQKM 387

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH-ARKNNPIPQKSTGFDRRKKNYSS 415
             +I++LI  ++      +    P  E++  A H   +  +   P   T    R +  ++
Sbjct: 388 YASIQELIGAQLPV--SRIEGFEPRWEQVQAALHEQPSMSSPSAPSSRTQRTERGEKRAN 445

Query: 416 QKSHIPLKESEKISKLQQD 434
           Q+     ++ EK+ +++++
Sbjct: 446 QREAK--RQVEKMVEVERN 462


>gi|297850038|ref|XP_002892900.1| hypothetical protein ARALYDRAFT_471825 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338742|gb|EFH69159.1| hypothetical protein ARALYDRAFT_471825 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 487

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 141/440 (32%), Positives = 229/440 (52%), Gaps = 13/440 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LGL+   V    + G  KPTP+Q   +P +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 55  NFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILH 114

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    V     L++ PTRELA Q+A+ F+  G   NL  ++++GG+    Q + L  
Sbjct: 115 RLAEDPYGVFA---LVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTRSLVS 171

Query: 122 GADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              ++I TPGRI            + +  + LV+DEADR+LD+GF   ++ I   +P +R
Sbjct: 172 RPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSR 231

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATMT  LQ + E+        E      T +T+   F+       +   +    
Sbjct: 232 QTLLFSATMTSNLQTLLEHSSNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLVHILS 291

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                 +++ +IF +  +    L   L++      A+H    Q  R+  LS FK G I +
Sbjct: 292 QMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENVAMHSLNSQSMRLSALSKFKSGKIPI 351

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDIP V  V N+D+P    +Y+HR+GRT RAGR G A +++ + D+K I 
Sbjct: 352 LLATDVASRGLDIPTVDLVINYDIPRNPRDYVHRVGRTARAGRGGLAVSIITETDVKLIH 411

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IE+ + KK++  N  +       + +++ + + A++   +     GF+ + K+    K 
Sbjct: 412 KIEEEVGKKMEPYNNKI-----ITDSLEVTKVSKAKRVAMMRMLDNGFEDKVKDRRKLKR 466

Query: 419 HIPLKES--EKISKLQQDIQ 436
                +   +K SK Q+  +
Sbjct: 467 KTLADKGLLKKRSKRQKSTE 486


>gi|224536831|ref|ZP_03677370.1| hypothetical protein BACCELL_01707 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521553|gb|EEF90658.1| hypothetical protein BACCELL_01707 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 657

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 151/485 (31%), Positives = 253/485 (52%), Gaps = 32/485 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
           +F +LGLSP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++
Sbjct: 3   NFEELGLSPEIRRAIEEMGYECPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             +     + R+P++LIL PTREL  Q+A +   Y K    L V  + GG   ++Q + L
Sbjct: 63  QKINV---KNRIPQSLILCPTRELCLQIAGDLNDYSKYITGLRVLPVYGGSSIDSQIRAL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G  +++ TPGR+LD   R  + +  I+ +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KQGVHIIVATPGRLLDLMERKTVSLTTIQNVVMDEADEMLNMGFTDSINAILADVPQERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+ +L++ K I +   +   E+  +     +  ++K      + +
Sbjct: 180 TLLFSATMSPEIARISKKYLRDAKEITIGRKN---ESTSNVKHVVFTVHAKDKYAALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L + G++  ++HG + Q  R  ++  F+   +Q++
Sbjct: 237 VDYYPQIYGIIFCRTRKETQEIADKLMQDGYNADSLHGELSQAQRDTVMQKFRIRNLQIL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRE 356

Query: 360 IEKLIEKKV---------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK-------- 402
           IE++I KK                L  +   LEK+ + + + A     I +K        
Sbjct: 357 IERIISKKFIVGEMPTGKQICEKQLLKVIDDLEKVKVNEEDMADFMPEIYRKLDWLSKED 416

Query: 403 ------STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPK 456
                 S  F+R  + Y   +  I +    +  +  +   E   D    + +     L  
Sbjct: 417 LIKRMVSHEFNRFSE-YYRNREEIEMPTDSRGERNSRGGSERTGDRNSRKADPGFTRLFI 475

Query: 457 NRGKL 461
           N GK+
Sbjct: 476 NLGKM 480


>gi|28871796|ref|NP_794415.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855048|gb|AAO58110.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 442

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 145/374 (38%), Positives = 218/374 (58%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV ++  +Y ++  L+     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD + +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLYRQKAIRFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A ++            K+ A L   
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSV---KQWVVTVDKKRKADLFIH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +      ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 238 LMKKHRWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNDVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG+ G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGQTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVDWLN 372
           AIE L  + ++   
Sbjct: 358 AIEVLTRQTLERKE 371


>gi|194743932|ref|XP_001954452.1| GF16725 [Drosophila ananassae]
 gi|190627489|gb|EDV43013.1| GF16725 [Drosophila ananassae]
          Length = 693

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 130/372 (34%), Positives = 215/372 (57%), Gaps = 4/372 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG--- 66
           P ++  V+  G+ KP+PIQ +  P++L+ HD+ GIAQTGTGKT +F+LP +   E     
Sbjct: 276 PDLLAEVMKQGFSKPSPIQAQAWPILLKGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSVP 335

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTRELA Q+    +KY    N+    + GG     Q   +ERGA+++
Sbjct: 336 RGQRGGPNVLVLAPTRELALQIEMEVKKYS-FRNMRAVCVYGGGDRRMQISDVERGAEII 394

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           ICTPGR+ D      + +++I  LV+DEADRMLDMGF P I+ +   +   RQT++ SAT
Sbjct: 395 ICTPGRLNDLVQANVINVSSITYLVLDEADRMLDMGFEPQIRKVLLDIRPDRQTIMTSAT 454

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
               ++++++++++NP ++ V +    A       +      ++K   ++  +++     
Sbjct: 455 WPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIELLQDDAEKFQTIKSFVKNMRKTD 514

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+FC +K    +L   L   GF    IHGN DQ  R + +++ K G ++++VA+D+A+
Sbjct: 515 KIIVFCGRKARADDLSSDLTLDGFCTQCIHGNRDQSDREQAIADIKSGAVRILVATDVAS 574

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + + V +ED      +  ++++
Sbjct: 575 RGLDIEDISHVINYDFPRNIEEYVHRVGRTGRAGRKGTSISFVTREDWGMAKELIDILQE 634

Query: 367 KVDWLNGDLSSL 378
               +  +L ++
Sbjct: 635 AEQDVPPELYNM 646


>gi|157138136|ref|XP_001664143.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108869558|gb|EAT33783.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 495

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 126/409 (30%), Positives = 213/409 (52%), Gaps = 7/409 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D+GL   +  A     +  P+ IQ + IPL LQ  DV G+A+TG+GKT +F LP+L 
Sbjct: 58  SWEDMGLIDTLCEACRALKWKAPSKIQREAIPLALQGKDVIGLAETGSGKTGAFALPILQ 117

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN-KKLE 120
            L +   R       IL PTRELA Q+++ FE  G +  +   +++GG+   +Q      
Sbjct: 118 ALLENPQRYFAV---ILTPTRELAYQISEQFEALGASIGIKCCVIVGGMDMVSQALHLAR 174

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      +    N     +  ++ LV+DEADR+L++ F   ++ I  ++P  R+T
Sbjct: 175 KPHIIIATPGRLVDHLENTKGFNLKAVKYLVMDEADRILNLDFEVELEKILKVIPRERRT 234

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT +++K+    L++P ++EV++   T E +           +K   +    + 
Sbjct: 235 FLFSATMTKKVKKLERASLKDPVKVEVSSKYQTVEKLLQ---YYIFIPAKYKDVYLVHIL 291

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK    Q+++
Sbjct: 292 NELAGNSFMIFCSTCNNTVRTALMLRALGLAAVPLHGQMSQNKRLAALNKFKGKNRQILI 351

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 352 STDVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRAGKAVTFVTQYDVELYQRI 411

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           E L+ KK+     +   +    E++  AQ     +   I  +     ++
Sbjct: 412 EHLLGKKLPQFKCEEDEVMALQERVGEAQRTARLELKDIDDRKGSKGKK 460


>gi|88704236|ref|ZP_01101950.1| ATP-dependent RNA helicase DEAD/DEAH box [Congregibacter litoralis
           KT71]
 gi|88701287|gb|EAQ98392.1| ATP-dependent RNA helicase DEAD/DEAH box [Congregibacter litoralis
           KT71]
          Length = 604

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 140/372 (37%), Positives = 215/372 (57%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L L   ++ A+ D GY  P+ IQ  TIP +L+  D+ G AQTGTGKTA+F LP+L 
Sbjct: 9   SFDELQLPVFLMKALSDVGYETPSAIQTMTIPPLLEGKDLVGQAQTGTGKTAAFALPILA 68

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKLE 120
            L+    ++  P+ L+L PTRELA QVA+ F+KY ++      L I G   +  Q ++L+
Sbjct: 69  RLDA---KLAKPQALVLAPTRELAIQVAEAFQKYARHSKGFKVLPIYGGSDYRTQLRQLQ 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG L ++ ++ LV+DEAD ML MGFI  ++ I    P  RQ 
Sbjct: 126 RGVHVIVGTPGRVMDHMRRGSLDLSALKTLVLDEADEMLRMGFIDDVEWILEQTPPERQI 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM D ++++++  L  P+ I +   + T  +I          +           +
Sbjct: 186 ALFSATMPDAIRRIAQQHLSKPEEITIKLKTVTNASIRQRVWMMGGMHKLDALTRILETE 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D +   IIF   +     L   L  +G+   A++G+I Q  R K + N K+G + ++V
Sbjct: 246 DTDGI---IIFVRTRIATQELADKLAARGYGTAALNGDIPQNLREKTVENLKKGALDILV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+PN  E Y+HRIGRTGRAGR G+A    A  + + +  I
Sbjct: 303 ATDVAARGLDVERISHVINYDIPNDPEAYVHRIGRTGRAGRTGEAILFAANRERRLLRTI 362

Query: 361 EKLIEKKVDWLN 372
           E++  +K++ + 
Sbjct: 363 ERVTGQKIESME 374


>gi|332029665|gb|EGI69554.1| Putative ATP-dependent RNA helicase DDX17 [Acromyrmex echinatior]
          Length = 595

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 129/380 (33%), Positives = 206/380 (54%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF + G    V+  +   G+ +PT IQ +  P+ L   D+ GIA TG+GKT S++LP + 
Sbjct: 130 DFDEAGFPDYVLREIKRQGFSEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPAIV 189

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       R   P  L+L PTRELA Q+    + +G +  +    L GG P  AQ + L
Sbjct: 190 HINSQPKLSRKDGPIALVLAPTRELAQQIQQVADDFGHSSGIRNTCLYGGAPKGAQARDL 249

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G +++I TPGR+LD    GK  +     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 250 DGGVEIVIATPGRLLDFLESGKTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 309

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQL 238
           TL++SAT   E++ ++E+FL++  +I V +   +A       +     Y K+        
Sbjct: 310 TLMWSATWPKEVKNLAEDFLKDYAQINVGSLQLSANHNILQIIDVCQDYEKENKLSTLLK 369

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               ++    I+F   K+ V  +   +++ G+    IHG+  Q+ R  +L +F+ G   +
Sbjct: 370 EIMAESENKTIVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWVLQDFRSGKAPI 429

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ DV  V NFD P+ +E+Y+HRIGRTGR  + G A+T     +    +
Sbjct: 430 LVATDVAARGLDVEDVKFVINFDYPSCSEDYVHRIGRTGRRQKTGTAYTFFTPNNANKAN 489

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + +++++    +N  L  L
Sbjct: 490 DLIQVLKEANQVINPKLLEL 509


>gi|262164808|ref|ZP_06032546.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM223]
 gi|262027188|gb|EEY45855.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM223]
          Length = 464

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 169/392 (43%), Positives = 243/392 (61%), Gaps = 10/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPRVRANQVRALILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADVLVATPGRLMDLYNQNAIKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C         KK   +   L
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADV---KKKPAMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 238 VKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDI 387
           IE+L +  +  +N  L+   P    P  K+D 
Sbjct: 358 IERLTQALLPRIN--LAGFEPTNLLPESKLDT 387


>gi|258624900|ref|ZP_05719828.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
 gi|258582898|gb|EEW07719.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
          Length = 451

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 169/392 (43%), Positives = 243/392 (61%), Gaps = 10/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPRVRANQVRALILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADVLVATPGRLMDLYNQNAIKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C         KK   +   L
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADV---KKKPAMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 238 VKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDI 387
           IE+L +  +  +N  L+   P    P  K+D 
Sbjct: 358 IERLTQALLPRIN--LAGFEPTNLLPESKLDT 387


>gi|220913497|ref|YP_002488806.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
 gi|219860375|gb|ACL40717.1| DEAD/DEAH box helicase domain protein [Arthrobacter
           chlorophenolicus A6]
          Length = 694

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 145/376 (38%), Positives = 221/376 (58%), Gaps = 7/376 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLG+  +V+ A+ D GY KP+PIQ  TIPL+L+  DV G+AQTGTGKTA+F +P L
Sbjct: 50  VKFADLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPAL 109

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQN 116
           +    L       R  + L+L PTRELA QVA+ F  Y K+ +    L + G   +  Q 
Sbjct: 110 SRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQL 169

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L RGA V++ TPGR++DH ++G L ++ ++ LV+DEAD ML MGF   ++ I    P 
Sbjct: 170 AGLRRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQTPE 229

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ  LFSATM  +++++S+ +L +P  I V T +ST   I   ++              
Sbjct: 230 DRQVALFSATMPGQIRRMSKQYLNDPAEISVKTKTSTGTNIRQRYLQIMGPQKLDAMTRI 289

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             ++  D +   +      +++ +   S   +GF   AI+G+I Q+ R + +   KEG I
Sbjct: 290 LEVEEFDGVIAFVRTKMATEDLADKLKS---RGFQAAAINGDIPQQQRERTVDALKEGRI 346

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR+G A   +   +   
Sbjct: 347 DILVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRNGDAILFMTPREKYL 406

Query: 357 IDAIEKLIEKKVDWLN 372
           + AIEK   + V+ ++
Sbjct: 407 LRAIEKATRQSVEQMH 422


>gi|213966785|ref|ZP_03394936.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           T1]
 gi|301383294|ref|ZP_07231712.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato Max13]
 gi|302062467|ref|ZP_07254008.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato K40]
 gi|302133449|ref|ZP_07259439.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213928635|gb|EEB62179.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           T1]
          Length = 442

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 145/374 (38%), Positives = 218/374 (58%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV ++  +Y ++  L+     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD + +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLYRQKAIRFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A ++            K+ A L   
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSV---KQWVVTVDKKRKADLFIH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +      ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 238 LMKKHRWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG+ G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGQTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVDWLN 372
           AIE L  + ++   
Sbjct: 358 AIEVLTRQTLERKE 371


>gi|156847065|ref|XP_001646418.1| hypothetical protein Kpol_2001p67 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380643|sp|A7TGU7|DHH1_VANPO RecName: Full=ATP-dependent RNA helicase DHH1
 gi|156117094|gb|EDO18560.1| hypothetical protein Kpol_2001p67 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 484

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 115/376 (30%), Positives = 186/376 (49%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L  +++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTA+FV+P L 
Sbjct: 35  TFEDFYLKRELLMGIFEAGFEKPSPIQEESIPVALAGRDILARAKNGTGKTAAFVIPTLE 94

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +++    LI+ PTRELA Q +      GK+  ++  +  GG        +L  
Sbjct: 95  KVKSKHNKIQ---ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNE 151

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD  +R    ++   + ++DEAD+ML   F   I+ I   +P   Q+L
Sbjct: 152 TVHILVGTPGRVLDLASRKVADLSECNLFIMDEADKMLSRDFKSIIEQILVFLPKNHQSL 211

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++    F+ N              T++           K+       L S
Sbjct: 212 LFSATFPLSVKE----FMVNHLHKPYEINLMDELTLKGITQYYAFVEEKQKLHCLNTLFS 267

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   +   G+S    H  + Q+ R ++   F++G ++ +V 
Sbjct: 268 KLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNRVFHEFRQGKVRTLVC 327

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+   D  ++  IE
Sbjct: 328 SDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIE 387

Query: 362 KLIEKKVDWLNGDLSS 377
           + +  ++  +   +  
Sbjct: 388 QELGTEIQAIPATIDK 403


>gi|148643558|ref|YP_001274071.1| helicase [Methanobrevibacter smithii ATCC 35061]
 gi|222444945|ref|ZP_03607460.1| hypothetical protein METSMIALI_00561 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350482|ref|ZP_05975899.1| ATP-dependent RNA helicase DeaD [Methanobrevibacter smithii DSM
           2374]
 gi|148552575|gb|ABQ87703.1| helicase [Methanobrevibacter smithii ATCC 35061]
 gi|222434510|gb|EEE41675.1| hypothetical protein METSMIALI_00561 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861264|gb|EFC93562.1| ATP-dependent RNA helicase DeaD [Methanobrevibacter smithii DSM
           2374]
          Length = 429

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 141/369 (38%), Positives = 215/369 (58%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  +  ++  ++ + G+ +P+PIQ  TIP  L+  D+ G AQTGTGKT +F +P+L
Sbjct: 4   ITFDDFEILAEIKKSIKEMGFEEPSPIQELTIPEALKGIDIIGQAQTGTGKTLAFTVPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             +         P+ ++L PTREL  QVA    K G +      L + G  P   Q + L
Sbjct: 64  QKIFIPDNS---PQAIVLCPTRELCIQVAGEIGKIGSHMKKLKILPVYGGQPIGRQIRVL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  V+I TPGR+LDH  R  L +  I  +V+DEAD MLDMGF   I+ I    P  RQ
Sbjct: 121 NKGVHVVIGTPGRVLDHIERKTLDLKGISTVVLDEADEMLDMGFREDIEKILRHTPKQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E++++++ + + PK ++V     T   I       +    K        L
Sbjct: 181 TLLFSATMPKEIKRITKFYQKKPKHLKVAQSQMTVPEI---TQYYFETKEKDKLENLTRL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +  G++FCN KK V  +  +L  +G++   IHG+++Q+SR K+++ F+ G I+++
Sbjct: 238 IDVYDVNLGLVFCNTKKRVDWVAKNLRNRGYAAEGIHGDMNQKSRDKVMNKFRNGNIEIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+P+V  V N+DVP   E Y+HRIGRTGRAG  G AFT VA ++I  +  
Sbjct: 298 IATDVAARGIDVPNVEVVVNYDVPQNPEYYVHRIGRTGRAGNMGYAFTFVAGKEIYSLRT 357

Query: 360 IEKLIEKKV 368
           I+K+ + K+
Sbjct: 358 IKKVTKSKI 366


>gi|74354729|gb|AAI03319.1| DDX5 protein [Bos taurus]
          Length = 671

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 135/441 (30%), Positives = 221/441 (50%), Gaps = 6/441 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 151 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 210

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 211 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 270

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 271 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 330

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 331 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 390

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 391 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 450

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 451 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 510

Query: 358 DAIEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N  L  L                  R++     K  GF+  +   +
Sbjct: 511 SDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 570

Query: 415 SQKSHIPLKESEKISKLQQDI 435
             + +  L + +  +K Q  +
Sbjct: 571 YDRGYSSLLKRDFGAKTQNGV 591


>gi|320330567|gb|EFW86546.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330873565|gb|EGH07714.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 442

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 144/374 (38%), Positives = 216/374 (57%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV ++  +Y ++  L+     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G +VL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRKGVEVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A ++            K+ A L   
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSV---QQWVVTVDKKRKADLFIH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +      ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 238 LMKKHRWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVDWLN 372
           AIE L  + ++   
Sbjct: 358 AIEVLTRQTLERKE 371


>gi|300718571|ref|YP_003743374.1| Cold-shock DEAD-box protein A [Erwinia billingiae Eb661]
 gi|299064407|emb|CAX61527.1| Cold-shock DEAD-box protein A [Erwinia billingiae Eb661]
          Length = 645

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 149/484 (30%), Positives = 255/484 (52%), Gaps = 33/484 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+ +++ ++   GYVKP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLNAELLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     ++ P+ L+L PTRELA QV +    + K+      + +  G  ++ Q + L 
Sbjct: 67  NIDSS---LKAPQILVLAPTRELAVQVGEAITDFSKHMKGLNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDNHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + ++++++ F+++P+ + + +  +T   I   +   + + +       +   
Sbjct: 184 ALFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSYWTAFGRKTDALTRFLE--- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 -AEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V NFD+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGLDVERISLVVNFDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 359

Query: 361 EKLIEKKVDWL---NGDL----------SSLNPPLEKIDIAQHNH-ARKNNPIPQK---- 402
           E+ ++  +  +   N +L          + +   LE  D+ Q+     K  P   +    
Sbjct: 360 ERTMKLTIPEVELPNAELLGERRLAKFAAKVQQQLESSDLEQYRALLSKMQPAEDELDIE 419

Query: 403 -------STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLP 455
                        R     +     P +E ++    + D  E         G  PA    
Sbjct: 420 TLAAALLKMAQGERPLIVPADAPQRPRREFKERDDRRGDRPERGPREKSEGGERPARRER 479

Query: 456 KNRG 459
           ++ G
Sbjct: 480 RDVG 483


>gi|242059637|ref|XP_002458964.1| hypothetical protein SORBIDRAFT_03g043450 [Sorghum bicolor]
 gi|241930939|gb|EES04084.1| hypothetical protein SORBIDRAFT_03g043450 [Sorghum bicolor]
          Length = 578

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 138/378 (36%), Positives = 204/378 (53%), Gaps = 3/378 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--ML 60
           F +       + A+  +G+V+PTPIQ +  P+ L+  D+ GIAQTG+GKT S++LP  + 
Sbjct: 161 FQEANFPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDLIGIAQTGSGKTLSYLLPGLVH 220

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +    +   P  LIL PTRELA Q+ +   K+G         + GG P   Q + L 
Sbjct: 221 VGAQPRLEQGDGPIVLILAPTRELAVQIQEESTKFGSYSRTRSTCVYGGAPKGPQIRDLR 280

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D    G   +  +  LV+DEADRMLDMGF P I+ I + +   RQT
Sbjct: 281 RGVEIVIATPGRLIDMLEAGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQT 340

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L +SAT   E++ ++  FLQNP ++ + +P   A       V   + + K    L +LL 
Sbjct: 341 LYWSATWPREVEALARQFLQNPYKVTIGSPELKANHSIQQIVEVISDHEKY-PRLSKLLS 399

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF   KK+   +   L   G+   +IHG+  Q  R  +L+ FK G   +M 
Sbjct: 400 DLMDGSRILIFFQTKKDCDKITRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMA 459

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+  V N+D P   E+YIHRIGRTGRAG  G AFT     + K    +
Sbjct: 460 ATDVAARGLDVKDIKCVINYDFPTTLEDYIHRIGRTGRAGASGTAFTFFTHANAKFSRNL 519

Query: 361 EKLIEKKVDWLNGDLSSL 378
            K++ +    +N  L S+
Sbjct: 520 VKILREAGQAVNPALESM 537


>gi|302653126|ref|XP_003018394.1| hypothetical protein TRV_07588 [Trichophyton verrucosum HKI 0517]
 gi|291182037|gb|EFE37749.1| hypothetical protein TRV_07588 [Trichophyton verrucosum HKI 0517]
          Length = 530

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 125/459 (27%), Positives = 203/459 (44%), Gaps = 37/459 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +   ++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFEDFYIKRDLMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                   ++   + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 107 ERTNP---KIAKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLN 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   ++     V+DEAD++L   F P I+ + +  P  RQ 
Sbjct: 164 DTVHIIVGTPGRILDLASKGVADLSECTTFVMDEADKLLSPEFTPVIEQLLTFHPKDRQV 223

Query: 181 LLFSATMTDELQKV------------------SENFLQNPKRIEVNTPSSTAETIEHCFV 222
           +LFSAT    ++                       F     R           T+     
Sbjct: 224 MLFSATFPIIVKTFKVRYTSIFFITCGNQLILIHIFQDKHMRNPYEINLMDELTLRGITQ 283

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  ++       L S+  +   IIFCN    V  L   + + G+S    H  + Q 
Sbjct: 284 YYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQH 343

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
           +R ++  +F+ G  + +V SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  
Sbjct: 344 NRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHL 403

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL----------------NPPLEKID 386
           G A  L+  +D  ++  IE+ +  ++  +   +                   NP  ++  
Sbjct: 404 GLAINLINWDDRYNLYKIEQELGTEIQPIPPSIDKKLYVYETPNTIPRPISNNPSEDQKA 463

Query: 387 IAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKES 425
             Q N  R+    P    G     + +  + S+   + S
Sbjct: 464 AGQENQPRRQTTNPSNGHGQYSSGRGHYGRGSYRGSRGS 502


>gi|294892441|ref|XP_002774065.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239879269|gb|EER05881.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 674

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 134/422 (31%), Positives = 208/422 (49%), Gaps = 23/422 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
            F +  L   ++  +  AG+ KPTPIQ++  P+ L   D+ GIA+TG+GKT +F++P  +
Sbjct: 213 TFDEACLPDYILKEINRAGFEKPTPIQVQGWPVALSGRDMVGIAETGSGKTLAFMIPAVI 272

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +    +   P  LIL PTRELA Q+    +++G++  +T   + GG     Q + L
Sbjct: 273 HINAQPYLQKGDGPIVLILAPTRELALQIKAECDRFGRSSRITNTCVYGGTQRGPQARAL 332

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++ I TPGR++D    G   +  +  LV+DEADRMLDMGF P ++ I S +   RQ
Sbjct: 333 QNGVEICIATPGRLIDFLESGTTNLKRVTYLVMDEADRMLDMGFEPQVRKIVSQIRPDRQ 392

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK-----CAL 234
           TL++SAT   E+Q ++ +       +     S  A      +V       K         
Sbjct: 393 TLMWSATWPKEVQHLARDICNEEPVLVTVGRSGHACHNIQQYVEVVENNVKPERLLALMQ 452

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
                         +IFC+ K+   ++   L + G+   +IHG+  Q  R  +L+ FK G
Sbjct: 453 AASAATGGGWTAKTLIFCDTKRGADDITRLLRRDGWPALSIHGDKKQSERDWVLNQFKTG 512

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +M+A+D+A+RGLD+ DV +V N+D P   E+Y+HRIGRTGRAG  G A++  + +  
Sbjct: 513 RSAIMIATDVASRGLDVKDVKYVINYDFPGTIEDYVHRIGRTGRAGASGVAYSFFSPDKG 572

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           K    +       V+ L     S+   LE I  A              S G  R K NY 
Sbjct: 573 KLARQL-------VNCLREANQSVPEALETIAFANDRS---------NSGGKGRGKGNYG 616

Query: 415 SQ 416
            +
Sbjct: 617 GK 618


>gi|198282005|ref|NP_001095463.1| probable ATP-dependent RNA helicase DDX17 [Bos taurus]
 gi|154757449|gb|AAI51649.1| DDX17 protein [Bos taurus]
 gi|296487004|gb|DAA29117.1| DEAD box polypeptide 17 [Bos taurus]
          Length = 650

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 206/379 (54%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 214 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL++  +I V     +A       V    +  K   L+Q + +
Sbjct: 274 LMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 333

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    
Sbjct: 394 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 453

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E+    +N  L  L
Sbjct: 454 LIKVLEEANQAINPKLMQL 472


>gi|331012221|gb|EGH92277.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 559

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 150/386 (38%), Positives = 234/386 (60%), Gaps = 9/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++  +     P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPSKRE---PQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++PK +++ T + T   IE   +  +A       L       
Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL---E 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKI 385
           ++  +KV    L    + L+  ++K+
Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKM 387


>gi|281207155|gb|EFA81338.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 1157

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 135/418 (32%), Positives = 219/418 (52%), Gaps = 14/418 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + +A  GL  K+   +    Y KPTPIQ +TIP ++   ++ GIA+TG+GKT +F+LPM 
Sbjct: 512 LTWAQCGLPEKIHQLLKKNEYEKPTPIQAQTIPAIMSGRNIIGIARTGSGKTLAFLLPMF 571

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +  +    +      LI+ PTRELA Q+    +K+ K   L V  + GG     Q   
Sbjct: 572 RHVLSQDRPKQGEGMVGLIMSPTRELALQIYSECKKFSKVLGLRVCCVYGGANIGEQIAD 631

Query: 119 LERGADVLICTPGRIL---DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           L+RGAD+++CTPGR++      N+    +  +  LV+DEADRM D+GF P I  I   V 
Sbjct: 632 LKRGADIVVCTPGRMIDILCANNKRITNLRRVSFLVLDEADRMFDLGFGPQIMCIIDNVR 691

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT++FSAT   ++++V+   L  P  I     S     +E            +   L
Sbjct: 692 PDRQTVMFSATFPFKVEQVARKILVKPLEIIAGGRSIVCSDVEQVV--EVRPSETRYRRL 749

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +LL +       +IF N++    NL   L + G+   ++HG+ DQ  R + +S+FK   
Sbjct: 750 IELLATWYHKGQILIFTNKQDATDNLFGLLSRAGYQCLSLHGSKDQTDRDETISDFKNKI 809

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +++A+ LA+RGLD+ D+  V N+D P+  E+Y+HR+GRTGRAG  G A+T V  ++ +
Sbjct: 810 KTILIATPLASRGLDVKDLNLVINYDCPDHLEDYVHRVGRTGRAGNKGTAYTFVLPDEGR 869

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
              +I K +E+    +  +L+ L    +++        ++   +   S+GF  R   +
Sbjct: 870 FAPSIIKALEQSGAKVPEELTKLGAEYQRLR-------QEGKEVMVASSGFGGRGHKF 920


>gi|222153378|ref|YP_002562555.1| DEAD box helicase family protein [Streptococcus uberis 0140J]
 gi|222114191|emb|CAR42728.1| DEAD box helicase family protein [Streptococcus uberis 0140J]
          Length = 561

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 142/373 (38%), Positives = 222/373 (59%), Gaps = 6/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  LS  +  AV+ AG+ K +PIQ  TIPL L+  DV G AQTGTGKTA+F LP L
Sbjct: 23  LKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 82

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +        + + L++ PTRELA Q  +   ++G++  + V  + GG   + Q K L+
Sbjct: 83  NKIRTDE---NIIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIDKQIKALK 139

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   R  L ++++E L++DEAD ML+MGF+  I+ I S VP  RQT
Sbjct: 140 SGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPSERQT 199

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++   F++NP+ +++     T   +E  +V    Q             
Sbjct: 200 LLFSATMPAPIKEIGVKFMKNPEHVQIKNKELTNVNVEQFYVRVKEQEKFDTMTRL---M 256

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  +  I+F   K+ V  +   L+ +GF    IHG++DQ  R++++ +FK   I ++V
Sbjct: 257 DVDQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQIDILV 316

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+    E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  I
Sbjct: 317 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKTGESITFVSPNEMGYLSMI 376

Query: 361 EKLIEKKVDWLNG 373
           E L +K++  L  
Sbjct: 377 ENLTKKQMKPLKP 389


>gi|146313637|ref|YP_001178711.1| ATP-dependent RNA helicase RhlB [Enterobacter sp. 638]
 gi|189040028|sp|A4WG30|RHLB_ENT38 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|145320513|gb|ABP62660.1| DEAD/DEAH box helicase domain protein [Enterobacter sp. 638]
          Length = 421

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 139/411 (33%), Positives = 211/411 (51%), Gaps = 10/411 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L  KV+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHAKVIEALENKGFHYCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSAFH 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSNPAMADRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P T
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPT 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 PQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
            AIE  I   V     +    LS L PP +++  A+  +  +    P+   
Sbjct: 369 TAIETYIGHSVPQSKYNPDALLSELPPP-KRLTRARSGNGPRRTGAPRNRR 418


>gi|73969117|ref|XP_860802.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 14 [Canis
           familiaris]
          Length = 614

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 147/458 (32%), Positives = 226/458 (49%), Gaps = 11/458 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 214 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL++  +I V     +A       V    +  K   L+Q + +
Sbjct: 274 LMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 333

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    
Sbjct: 394 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 453

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR----KNNPIPQKSTGFDRRKKNYSS 415
           + K++E+    +N  L  L            +  R     NNP        DRR +    
Sbjct: 454 LIKVLEEANQAINPKLMQLVDHRGGGGGGGRSRYRTTSSANNPNLMYQDECDRRLRGVKD 513

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFM 453
                  ++S       +  +   A+  G+     AF 
Sbjct: 514 GGR----RDSASYRDRSETDRAGYANGSGYGSPNSAFG 547


>gi|197099326|ref|NP_001126958.1| probable ATP-dependent RNA helicase DDX5 [Pongo abelii]
 gi|75061603|sp|Q5R4I9|DDX5_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5
 gi|55733290|emb|CAH93327.1| hypothetical protein [Pongo abelii]
          Length = 614

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 135/439 (30%), Positives = 220/439 (50%), Gaps = 6/439 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 154 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 213

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 214 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N  L  L                  R++     K  GF+  +   +
Sbjct: 454 SDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 513

Query: 415 SQKSHIPLKESEKISKLQQ 433
             + +  L + +  +K Q 
Sbjct: 514 YDRGYSSLLKRDFGAKTQN 532


>gi|86130260|ref|ZP_01048860.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
 gi|85818935|gb|EAQ40094.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
          Length = 638

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 210/371 (56%), Gaps = 8/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPM 59
           M F  LGL+  ++ A+ D G+  P+ IQ + IP +L +  D+  +AQTGTGKTA+F  P+
Sbjct: 1   MTFDQLGLNAPLLQAIADMGFETPSKIQEEAIPQLLAEDRDMVALAQTGTGKTAAFGFPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKK 118
           L  ++      +  + LI+ PTREL  Q+ +  + Y K+      + + G    + Q ++
Sbjct: 61  LQNIDAS---SKTTQGLIIAPTRELCLQITNEMKLYAKHIKGVRVVAVYGGSNIQEQARE 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           + RGA +++ TPGR+ D   R  + +  +   V+DEAD ML+MGF   I NI +  P  +
Sbjct: 118 ISRGAQIVVATPGRMQDMMRRRMVDITKLSYCVLDEADEMLNMGFYEDITNILADTPEDK 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            T LFSATM  E+ ++++ F+ +P  I   T     E  ++     Y  +++      + 
Sbjct: 178 LTWLFSATMPREVARIAKEFMHDPLEI---TVGHKNEGAKNVSHEYYVVHTRDRYQALKR 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   +     +IFC  K++   +   L + G++  A+HG++ Q  R  ++ +F+   IQ+
Sbjct: 235 LSDANPDIFSVIFCRTKRDTQKVAEQLIEDGYNAGALHGDLSQNQRDLVMKSFRNNQIQM 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+ HV N+ +P+  E Y HR GRTGRAG+ G +  +V K +++ I 
Sbjct: 295 LVATDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKTGTSMVIVTKSEMRKIK 354

Query: 359 AIEKLIEKKVD 369
            +EK++ KK D
Sbjct: 355 QLEKILAKKFD 365


>gi|94311500|ref|YP_584710.1| DEAD/DEAH box helicase-like protein [Cupriavidus metallidurans
           CH34]
 gi|93355352|gb|ABF09441.1| ATP-dependent RNA helicase [Cupriavidus metallidurans CH34]
          Length = 634

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 160/482 (33%), Positives = 246/482 (51%), Gaps = 27/482 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           FA LGL   ++ A+ +A Y  PTP+Q + IP  L   D+   +QTG+GKTA+F+LP    
Sbjct: 51  FAKLGLDAAILRALAEANYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQR 110

Query: 60  ---------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTV 103
                              ++ R     P  L+L PTRELA QV +   KYG++   +  
Sbjct: 111 ISEKPATHRPTEPAKRMKGKRPRPSPAQPSLLVLTPTRELALQVTEAAAKYGRHLRRIVC 170

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163
           A ++GG+P+  Q   L R  D+L+ TPGR+LDH   G++ ++ +E+LV DEADRMLDMGF
Sbjct: 171 ASILGGMPYPKQLAMLARMPDILVATPGRLLDHIEAGRIDLSALEMLVFDEADRMLDMGF 230

Query: 164 IPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
              I  I +  P +RQTL+FSAT+   + +++   L++P+RIE+    +    IE     
Sbjct: 231 ADDIDAIVAATPASRQTLMFSATLDARIAQLASRQLRDPQRIEIAAARADHSNIEQRLHF 290

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
           T     K+   L   L    ++K  I+F   K++  +L   L   GFS  A+HG++ Q +
Sbjct: 291 TDDMSHKER--LLDHLLRDASLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGA 348

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L+  + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR G
Sbjct: 349 RNRTLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSG 408

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIPQK 402
            A  LV   D+     IE+    ++D    +       P  + +       R        
Sbjct: 409 VAINLVNHGDMFQWRRIERFTNNRIDASVIEGFEPRRSPKPRSNFGGKPGGRDGFRGNGG 468

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
           + G  R        + +          +     +   +D+ GF    P      NRG   
Sbjct: 469 TGGGYRGNNGSGGYRGNREGSGDRNFGE-----RRFSSDNRGFGDRAPRPFGDDNRGGFG 523

Query: 463 DK 464
           D+
Sbjct: 524 DR 525


>gi|329297879|ref|ZP_08255215.1| ATP-dependent RNA helicase RhlB [Plautia stali symbiont]
          Length = 431

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 137/422 (32%), Positives = 211/422 (50%), Gaps = 12/422 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P+VV A+ +  +   TPIQ   +P  L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPQVVEALDEKDFHNCTPIQALALPFALSGRDVAGQAQTGTGKTLAFLTSTFH 69

Query: 62  ILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L         +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  +E Q K
Sbjct: 70  YLLSHPAAEGRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYEKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+L+ T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLADGVDILVGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F        V       +T        +   +++   L Q
Sbjct: 190 TQRLSMLFSATLSYRVRELAFEHMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     I+F N K    ++   L   G  V  ++G++ Q+ R++IL +  +G + 
Sbjct: 249 TLLEEEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLNGDVAQKKRLRILDDVTKGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR---RK 410
            AIE+ I   +     +    LS L PP         N  R+      +  G  R   RK
Sbjct: 369 PAIEEYIGHGIPVSKYNSDALLSDLPPPKRLQRNRSGNGPRRGGNNSNRLGGAPRNNNRK 428

Query: 411 KN 412
           ++
Sbjct: 429 RS 430


>gi|326940167|gb|AEA16063.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 455

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 141/410 (34%), Positives = 229/410 (55%), Gaps = 11/410 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 3   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 63  KIDPECSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE           +      + + 
Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFVM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 297 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           EK +   +     +     P ++++D       +       ++   D R+
Sbjct: 357 EKTLGAPIQREIIE----QPKIKRVDENGKPVPKPAPKKSGQNRQRDSRE 402


>gi|195453762|ref|XP_002073931.1| GK14378 [Drosophila willistoni]
 gi|194170016|gb|EDW84917.1| GK14378 [Drosophila willistoni]
          Length = 683

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 120/378 (31%), Positives = 196/378 (51%), Gaps = 5/378 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           FA+    P ++  +   G+ KP+PIQ +  P++LQ  D+ GIAQTGTGKT +F+LP M+ 
Sbjct: 267 FAEY---PDLLGEIQKQGFSKPSPIQAQAWPILLQGLDMIGIAQTGTGKTLAFLLPGMIH 323

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +   R +     +L         +    E    ++    A+ + G            
Sbjct: 324 TEYQSTPRGQRGGANVLVLAPTRELALQIEMEVNKYSFRNMRAVCVYGGGCRKMQISDVE 383

Query: 122 GA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ICTPGR+ D      + ++ I  LV+DEADRMLDMGF P I+ I   +P  RQT
Sbjct: 384 RGAEIIICTPGRLNDLVQAKVIDVSTITYLVLDEADRMLDMGFEPQIRKILLDIPPNRQT 443

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT    +++++ +++ NP  + V +    A       V       +K   ++  ++
Sbjct: 444 IMTSATWPPGVRRLANSYMTNPIEVCVGSLDLAATHSVKQIVQFLEDDKEKYRTIKSFIK 503

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       IIFC +K    +L   L   GF    IHGN DQ  R + +++ K G + ++V
Sbjct: 504 NMGESDKIIIFCGRKARADDLSSDLTLDGFMTQCIHGNRDQNDREQAIADIKSGVVHILV 563

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + + + +ED      +
Sbjct: 564 ATDVASRGLDIEDISHVINYDFPRNIEEYVHRVGRTGRAGRKGTSISFITREDWGMAHEL 623

Query: 361 EKLIEKKVDWLNGDLSSL 378
            K++E+    +  +L  +
Sbjct: 624 IKILEEADQEVLPELVKM 641


>gi|163755350|ref|ZP_02162470.1| putative RNA helicase dead-box protein [Kordia algicida OT-1]
 gi|161324770|gb|EDP96099.1| putative RNA helicase dead-box protein [Kordia algicida OT-1]
          Length = 591

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 133/372 (35%), Positives = 220/372 (59%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F +LGL   ++ A+ D G+  P+ +Q K IP++L    D+  +AQTGTGKTA+F  P++
Sbjct: 3   KFEELGLQDSLLRAIQDMGFETPSEVQEKAIPILLNEETDIVALAQTGTGKTAAFGFPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +       R  + LIL PTREL  Q+ +  + Y K  N+ V  + GG     Q ++++
Sbjct: 63  QKINA---DSRTTQGLILSPTRELCLQITNELKNYSKYENINVVAIYGGASITDQARQVK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA +++ TPGR+ D  NR  + ++ IE  V+DEAD ML+MGF   I +I S  P  + T
Sbjct: 120 KGAQIVVATPGRMQDMINRRMVDISKIEYCVLDEADEMLNMGFYEDITSILSHTPDDKST 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  +++ F+  P+ I V + +S ++++ H     YA   +   L  + L 
Sbjct: 180 WLFSATMPREVATIAKKFMHTPQEITVGSRNSGSDSVRH---EFYAVSGRDRYLALKRLA 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     ++FC  K++  N+   L + G++  AIHG++ Q  R  ++ +F+   IQ++V
Sbjct: 237 DANPDIFSVVFCRTKRDTQNVAEKLIEDGYNAAAIHGDLSQNQRDLVMKSFRTRQIQMLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV N+ +P+  E Y HR GRTGRAG++G +  +V K +++ I +I
Sbjct: 297 ATDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKNGVSMVIVTKSEMRKIKSI 356

Query: 361 EKLIEKKVDWLN 372
           E+ I+KK +   
Sbjct: 357 ERKIQKKFEQKP 368


>gi|157144413|ref|YP_001451732.1| ATP-dependent RNA helicase RhlB [Citrobacter koseri ATCC BAA-895]
 gi|189040026|sp|A8ACT3|RHLB_CITK8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|157081618|gb|ABV11296.1| hypothetical protein CKO_00122 [Citrobacter koseri ATCC BAA-895]
          Length = 421

 Score =  163 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 138/413 (33%), Positives = 213/413 (51%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFV----L 57
            F+D  L PKV+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVIEALENKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSSFH 69

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +L+       +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     I+F N K    ++   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    +++L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIEAYIGHSIPVSKYNPEALMTNLPKPLRLTRSRPGNGPRRTGAPRNRRRSG 421


>gi|330873518|gb|EGH07667.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330967687|gb|EGH67947.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 442

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 145/374 (38%), Positives = 218/374 (58%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV ++  +Y ++  L+     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD + +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLYRQKAIKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A ++            K+ A L   
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSV---KQWVVTVDKKRKADLFIH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +      ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 238 LMKKHRWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG+ G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGQTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVDWLN 372
           AIE L  + ++   
Sbjct: 358 AIEVLTRQTLERKE 371


>gi|195051805|ref|XP_001993174.1| GH13670 [Drosophila grimshawi]
 gi|193900233|gb|EDV99099.1| GH13670 [Drosophila grimshawi]
          Length = 518

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 141/437 (32%), Positives = 240/437 (54%), Gaps = 9/437 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLGLS  +  A  +  +  P+ IQ + IP+ LQ  DV G+A+TG+GKT +F LP+L
Sbjct: 57  LTWKDLGLSETLCKACDELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPIL 116

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      L+L PTRELA Q+ + FE  G    +   +++GG+   AQ  +L 
Sbjct: 117 HALLENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVIVGGMDMVAQGLQLA 173

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGR++DH    K      I+ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 174 KKPHIIIATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 233

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L++P ++EV+    T + ++  ++       K   +    +
Sbjct: 234 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYLFIPV---KYKDVYLVHI 290

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK     ++
Sbjct: 291 LNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 350

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR G+A T+V++ DI+    
Sbjct: 351 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITIVSQYDIELYQR 410

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+L+ K++     +   +    E++  AQ   A+      + S G+   + N  +  S 
Sbjct: 411 IEQLLGKQLPLYKCEEDEVMALQERVAEAQRT-AKLEFKDLEDSKGYKGGRGNKRTAASD 469

Query: 420 IPLKESEKISKLQQDIQ 436
               +SE+ +  ++ ++
Sbjct: 470 NQ-DDSEQFTGARKRMK 485


>gi|182678749|ref|YP_001832895.1| DEAD/DEAH box helicase domain-containing protein [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182634632|gb|ACB95406.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 479

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 156/472 (33%), Positives = 244/472 (51%), Gaps = 15/472 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGL+  ++  +   G+ +PTPIQ + IP +L+  D+ GIAQTGTGKTA+F LP+L 
Sbjct: 3   DFRGLGLASSLLDTLAKQGFTRPTPIQAQAIPAILEGRDLIGIAQTGTGKTAAFALPILH 62

Query: 62  ILEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L             +L   PTRELA+Q+A+ F   G+++ L+VA++ GG+   AQ K L
Sbjct: 63  ALITHPTPAPRGGARVLVLSPTRELASQIAETFRTLGQSHALSVAVVFGGVSPGAQIKAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG D+L+ TPGR++DH + G   +   E  V+DE D+MLD+GF+  I+ I   +P  RQ
Sbjct: 123 QRGLDILVATPGRLVDHIDSGVAHLGKTEFFVLDEVDQMLDLGFVKPIRRIVGTLPAKRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +L FSATM  E++K++ + L++P  + V   + TA+ +    V       +   +     
Sbjct: 183 SLFFSATMPGEIRKLATDLLKDPVTVSVTPVAKTADRVRQQVVFVETHRKRDILIEL--- 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                M   I+F   K+    +   LEK G    AIHGN  Q  R + L  F+ G ++ +
Sbjct: 240 FGDAMMTRTIVFTRTKRGADKVTQHLEKAGIPAFAIHGNKSQSQRERSLLAFRSGHVRAL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  V HV N+++P   E+Y+HRIGRT RAG  G A +L    +  ++  
Sbjct: 300 VATDIAARGIDIDGVTHVVNYELPEVPESYVHRIGRTARAGAEGIAISLCDGTERDYLRN 359

Query: 360 IEKL--IEKKVDWLNGDLSS--LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           IEKL  +   V+     L +  ++P   +    +  +         +    D  +   S 
Sbjct: 360 IEKLTRLNLPVEDRRSSLQNGEISPAARQHSDRRPAYGETCRQDRSQDRSLDPSRDRPSG 419

Query: 416 QKSHIPLKESE-----KISKLQQDIQENDADSLGFRGNM-PAFMLPKNRGKL 461
           + S    +E       + ++ +   Q   A SL       PAF   + R  +
Sbjct: 420 RFSRPGNQERRGDGDTRANEQRPQRQNRPAASLSKGTRPRPAFHQRRQRSDI 471


>gi|218231258|ref|YP_002367146.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228939601|ref|ZP_04102185.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228972459|ref|ZP_04133068.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979080|ref|ZP_04139429.1| ATP-dependent RNA helicase [Bacillus thuringiensis Bt407]
 gi|218159215|gb|ACK59207.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228780666|gb|EEM28884.1| ATP-dependent RNA helicase [Bacillus thuringiensis Bt407]
 gi|228787281|gb|EEM35251.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820093|gb|EEM66134.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 458

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 141/410 (34%), Positives = 229/410 (55%), Gaps = 11/410 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPECSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           EK +   +     +     P ++++D       +       ++   D R+
Sbjct: 360 EKTLGAPIQREIIE----QPKIKRVDENGKPVPKPAPKKSGQNRQRDSRE 405


>gi|212722850|ref|NP_001131651.1| hypothetical protein LOC100193011 [Zea mays]
 gi|194692160|gb|ACF80164.1| unknown [Zea mays]
          Length = 455

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 134/439 (30%), Positives = 228/439 (51%), Gaps = 11/439 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+  ++V A    G+ +PT IQ + IP  LQ  D+  +AQTG+GKT +F LP+L 
Sbjct: 25  TFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTGAFALPILQ 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   R   +     +L PTRELA Q+A+ FE  G    L  ++L+GG+    Q   + +
Sbjct: 85  ELLSNRQAEQSFFACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSIGK 144

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +          +  I+ LV+DEAD++L++ F   + +I S +P  R+T
Sbjct: 145 RPHIVVGTPGRLLDHLTETKGFSLKKIKYLVLDEADKLLNVEFEKSLDDILSEMPKDRRT 204

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+    L+NP ++EV++  ST ++++  F    A       L     +
Sbjct: 205 FLFSATMTKKVNKLQRACLRNPAKVEVSSKYSTVDSLKQEFYFVPADDKDCYLLHVLNER 264

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  +    IF    ++   L   L   G    +I G + Q  R+  L+ FK     +++
Sbjct: 265 LESMIM---IFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKAKDCNILI 321

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A+RGLDI  V  V N+D+P  +++Y+HR+GRT RAGR G A +LV + + +    I
Sbjct: 322 CTDVASRGLDIQGVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVNQYEAQWFVLI 381

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+L+ KK+D    D   +      I     + A++      K +G  ++++N       +
Sbjct: 382 EQLLGKKIDQCKVDRDEVLILKGPI-----SDAKRIALTKLKDSGGHKKRRNVGDDDEEV 436

Query: 421 PLKESEKISKLQQDIQEND 439
               S   S+  + ++ ++
Sbjct: 437 EDHSSH--SRRPKSLKRSN 453


>gi|304408310|ref|ZP_07389958.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304342779|gb|EFM08625.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 482

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 138/416 (33%), Positives = 225/416 (54%), Gaps = 19/416 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GLS  +  A+    + +PT +Q + IP+VLQ  D+   +QTG+GKTA++ +P+  +
Sbjct: 6   FVQYGLSEDIGRALEGLAFNEPTEVQREVIPVVLQGRDIVVKSQTGSGKTAAYGIPLCEL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +     +   P+ LIL PTRELA QV ++    G+   +  A + G  PF  Q  +L++ 
Sbjct: 66  VSWEENK---PQVLILTPTRELAVQVKEDLTNIGRFKRVKAAAIYGKQPFHIQKLELKQK 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+LDH  +G   ++ +  LVIDEAD ML+MGFI  ++ I   +P  R T+L
Sbjct: 123 THIVAGTPGRVLDHIEKGTFPLSKLAYLVIDEADEMLNMGFIDQVEAIIKRLPAERVTML 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ +++ ++  N++++P  +E+     T + IEH   A           L Q +   
Sbjct: 183 FSATLPEDVDQLRRNYMRDPVSVEIQATGLTTDAIEH---AQIKVSEADKLELLQSITIV 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++ V  L   L +  +    IHG + Q  R++++  F+ G  + ++A+
Sbjct: 240 ENPDSCIIFCRTQEGVNELFRKLARLEYPCDRIHGGMAQEERLEVMGAFRRGQFRYLIAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D P   E Y+HR GRTGRAG+ G+A T V   D   +  +E+
Sbjct: 300 DVAARGIDIDNITHVINYDFPLDKEGYVHRTGRTGRAGKRGQAITFVTPSDEGRLAEVEQ 359

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            I  ++  +        P  E ++ A+    RK N          R KK+ S+Q S
Sbjct: 360 YIGFRIRRIE------EPTAEAVESARDAFERKINRQT-------RLKKDKSAQVS 402


>gi|213968691|ref|ZP_03396833.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
           pv. tomato T1]
 gi|213926624|gb|EEB60177.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
           pv. tomato T1]
          Length = 573

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 150/386 (38%), Positives = 234/386 (60%), Gaps = 9/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 19  FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++  +     P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 79  IDPTKRE---PQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 135

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 136 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 195

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++PK +++ T + T   IE   +  +A       L       
Sbjct: 196 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL---E 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 253 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 313 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 372

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKI 385
           ++  +KV    L    + L+  ++K+
Sbjct: 373 RVTGQKVAEVRLPDAQAVLDARIKKL 398


>gi|28868981|ref|NP_791600.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|301381308|ref|ZP_07229726.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302061477|ref|ZP_07253018.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302130057|ref|ZP_07256047.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28852221|gb|AAO55295.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|330877010|gb|EGH11159.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
 gi|330968143|gb|EGH68403.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
 gi|331016872|gb|EGH96928.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 562

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 150/386 (38%), Positives = 234/386 (60%), Gaps = 9/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++  +     P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPTKRE---PQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++PK +++ T + T   IE   +  +A       L       
Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL---E 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKI 385
           ++  +KV    L    + L+  ++K+
Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKL 387


>gi|16800283|ref|NP_470551.1| hypothetical protein lin1214 [Listeria innocua Clip11262]
 gi|16413688|emb|CAC96445.1| lin1214 [Listeria innocua Clip11262]
          Length = 470

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 135/477 (28%), Positives = 230/477 (48%), Gaps = 30/477 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+  +L LS ++  A+ + GY + TP+Q   IP+ L   D+   +QTG+GKTA+F +P+ 
Sbjct: 1   MN--NLKLSEEIKRAINELGYKEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIA 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +   P+ LI+ PTRELA QV       G+   +  A + G  PF  Q  +L 
Sbjct: 59  EQVVWEENK---PQALIIVPTRELAMQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELS 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+LDH  +G L ++ +  LV+DE D ML MGFI  +++I S +P  RQ 
Sbjct: 116 QKNHIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQN 175

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+ +E            KR + N       + +   +      +       + + 
Sbjct: 176 LFFSATLPEE-------MQDLIKRYQDNPMVIEMASEKTNPIFHVEMQTDNKEKTLKDVL 228

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +   + IIFCN K  V  L   L+ +      IHG + Q  R + + +FK G  + ++
Sbjct: 229 ITENPDSAIIFCNTKNQVDELTDLLDVK---ASKIHGGLRQEDRFRAMDDFKSGKSRFLI 285

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A RG+D+ +V  V N+D+P   ENY+HRIGRTGRAG+ GKA + V   +   +  I
Sbjct: 286 ATDVAGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDI 345

Query: 361 EKLIEKKVD--------WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK---STGFDRR 409
           E+++   ++         +  +  +     +K    +     K N    K   + G  ++
Sbjct: 346 EEMLNITIEKKRKPTIIEVKANEEAFRKKQQKRPTIKKARGEKLNKNIMKLYFNGGKKKK 405

Query: 410 KK--NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            +  ++    S +    +E I  +   I+++ +      G  PA +      K+  +
Sbjct: 406 IRAVDFVGTISKLEGITAEDIGII--TIEDHVSFVEILNGKGPAVLEMMRSRKVKGR 460


>gi|302341638|ref|YP_003806167.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
           2075]
 gi|301638251|gb|ADK83573.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
           2075]
          Length = 490

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 127/379 (33%), Positives = 204/379 (53%), Gaps = 2/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  L   ++  + D+GY   TPIQ +TIPL L   DV G AQTGTGKTA+F++P+   
Sbjct: 26  FADFNLPEPLLRGLADSGYTHCTPIQERTIPLGLAGKDVAGEAQTGTGKTAAFLVPIFYH 85

Query: 63  L-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +    R   + P  LI+ PTRELA Q+ D+ ++ G++ +L +  + GG+ +  Q + L  
Sbjct: 86  MLRDQRTDRQFPAALIIAPTRELAVQIYDDAQQIGRHTDLRMVAVFGGVDYLKQARALRE 145

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR +D+  +  L +  ++ LVIDEADR+ DMGFI  ++ I   +P   +  
Sbjct: 146 GVDIVVATPGRAIDYIKQRALDLRAVKHLVIDEADRLFDMGFIADLRWIMRRLPPYDRRQ 205

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
               + T   + +   +       +V+         +      +    +    L   L  
Sbjct: 206 SMLFSATLGYRVLELTYEFMNMPAKVSVAPRQRTVEQVDQELYHCSAPE-KMSLLLGLLR 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++ +   +IF N K+ V  + + L   G     I G++ QR RM++L  FK G ++++VA
Sbjct: 265 REGVDRVMIFANTKRAVDAIAYKLRGNGLPAEGISGDLTQRRRMQLLEQFKSGELKILVA 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +++AARGL + ++ HV N+DVP   E+Y+HRIGRT RAG  GKA TL       H+  +E
Sbjct: 325 TNVAARGLHVENISHVINYDVPADPEDYVHRIGRTARAGAVGKAITLCCDRYATHLPYVE 384

Query: 362 KLIEKKVDWLNGDLSSLNP 380
           + + +K+     D S   P
Sbjct: 385 EYLGEKIPVCWADDSLFVP 403


>gi|169851879|ref|XP_001832628.1| ATP-dependent RNA helicase dhh1 [Coprinopsis cinerea okayama7#130]
 gi|116506276|gb|EAU89171.1| ATP-dependent RNA helicase dhh1 [Coprinopsis cinerea okayama7#130]
          Length = 509

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 118/376 (31%), Positives = 190/376 (50%), Gaps = 7/376 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D+ L  +++  + +AG+ KP+PIQ + IP+ L + D+   A+ GTGKTA+FV+P L
Sbjct: 42  LEFEDMRLGRELLMGIFEAGFEKPSPIQEEAIPVALTKQDILARAKNGTGKTAAFVIPSL 101

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  + +++    L+L PTRELA Q A   +  GK+  + V +  GG   +    +L 
Sbjct: 102 QQIDVAKPKIQA---LLLVPTRELALQTAQVCKILGKHMGVQVMVTTGGTTLKDDIIRLS 158

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               VL+ TPGRILD   +    ++   + V+DEAD++L   F P ++ + S +P  RQ 
Sbjct: 159 DTVHVLVGTPGRILDLAGKNVADLSECPVFVMDEADKLLSPEFAPVMEQLLSFLPSERQV 218

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F     R           T+            ++       L 
Sbjct: 219 MLFSATFPMIVKD----FKDKHMRSPYEINLMEELTLRGVTQYYAYVEERQKVHCLNTLF 274

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q  R ++  +F+ G  + +V
Sbjct: 275 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHDFRNGVCRNLV 334

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  LV  ED  ++  I
Sbjct: 335 CSDLLTRGIDIQAVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINLVTYEDRFNLYKI 394

Query: 361 EKLIEKKVDWLNGDLS 376
           E+ +  ++  +   + 
Sbjct: 395 EQELGTEIQPIPQSID 410


>gi|150019837|ref|YP_001312091.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149906302|gb|ABR37135.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 525

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 143/368 (38%), Positives = 219/368 (59%), Gaps = 7/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL   +V A+ D G+ KP+ IQ ++IP+ L   D+ G AQTGTGKTA++ LP++T
Sbjct: 5   QFATLGLKESIVKAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSLPIIT 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +   R      ++LIL PTRELA QV +  ++  K   +    + GG   + Q +   +
Sbjct: 65  KMSDNRG----IKSLILAPTRELAVQVNEEIQRLSKYEKIVTLAVYGGDSIDRQIRALRK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGRILD   R  L + +IE LV+DEAD ML+MGFI  IQ I S  P  RQT
Sbjct: 121 GDVDIVVGTPGRILDLVKRKCLHLESIEFLVLDEADEMLNMGFIDDIQEILSHTPSERQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D + K+++ +++   ++   +   ++ T+     + +   +K        L 
Sbjct: 181 LLFSATMPDPIAKLAKKYMKPDAKLV--SIKRSSLTVSKIEQSYFMINNKHRLEALCRLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D   + IIFC  K+ V  L   L+ +G+ V  +HG++ Q  R+  L+ FKEGT+ L++
Sbjct: 239 DLDNPSSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKEGTLNLLI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HVFN+D+P   E+Y+HRIGRTGRA + G A++LV  +D   +  I
Sbjct: 299 ATDVAARGIDVEGVTHVFNYDLPQDVESYVHRIGRTGRANKSGTAYSLVTPKDFSMLKQI 358

Query: 361 EKLIEKKV 368
           + + +  +
Sbjct: 359 QNVTKSSI 366


>gi|293399873|ref|ZP_06644019.1| ATP-dependent RNA helicase DbpA [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306273|gb|EFE47516.1| ATP-dependent RNA helicase DbpA [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 477

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 131/402 (32%), Positives = 218/402 (54%), Gaps = 7/402 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   ++ A+    Y +  PIQ + IP +L+  DV   ++TG+GKTASF +P++
Sbjct: 1   MQFKEFALHTDILKALEKLHYEQVLPIQEQVIPEILKGRDVIVRSRTGSGKTASFAIPIV 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L         P+ +IL PTRELA Q+ ++F+  G    +    + G  P++ Q + L+
Sbjct: 61  QELIWEERE---PQAIILTPTRELALQIKEDFDNIGAYRRIKTVAIFGKQPYKFQIQDLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           + A V++ TPGRILDH  R  L   +I  ++IDEAD ML+MGFI  +Q+I +  P  + T
Sbjct: 118 QRAHVVVGTPGRILDHLERETLKTGHIRYVIIDEADEMLNMGFIESVQSIFNYFPGNKIT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   +Q+++E F++ PK I ++  ++    I       Y    K+     + L 
Sbjct: 178 CLFSATMPQPIQELAEGFMKEPKLITLSEETTVNAAI---THYAYEVKEKQKLSFLKQLL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++   + IIF   ++ V  +C  L      V  +HG + Q  R+  + +FK+G I+++V
Sbjct: 235 CKEQPASCIIFARTQEGVKTICEELYALDMCVDKLHGGMLQEDRIGNIRDFKKGKIRILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ H+ N+D+PN+ E Y+HRIGRTGR    G A T + + D +    +
Sbjct: 295 ATDVAARGIDVQDISHIINYDMPNQKETYLHRIGRTGRQSASGVAITFINEYDGERKAEL 354

Query: 361 EKLIEKKVDWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           E+ +   ++    D +       E I+      A + +   +
Sbjct: 355 EEYLGYPLEIREKDEVRKQEVKKETIEPLTKPFALREDKGKE 396


>gi|291225668|ref|XP_002732809.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 795

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 137/413 (33%), Positives = 223/413 (53%), Gaps = 9/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
            F   G   +++  +  + Y  PTPIQ + +P+ +   D+ GIA+TG+GKTA+F+ P  +
Sbjct: 258 SFGHFGFDEQLMHYIRKSEYSTPTPIQAQGVPIAMSGRDIIGIAKTGSGKTAAFIWPLLI 317

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  LI  PTREL+ Q+    +K+GK YN+      GG     Q K  
Sbjct: 318 HIMDQKDIKPGDGPIGLICAPTRELSQQIHQECKKFGKAYNIHTVCAYGGGNMWEQTKAC 377

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++L+ TPGR++D   R    +  +  LV+DEADRM DMGF P +++I + V   RQ
Sbjct: 378 QAGCEILVATPGRLIDLVKRKATNLERVTFLVLDEADRMFDMGFEPQVRSIANHVRPDRQ 437

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   ++++++ + L +P R+         E +           +K   L+++L+
Sbjct: 438 TLLFSATFRKKVERLARDILTDPIRVIQGDLGEANEDVVQIVECLSDGPAKWPWLIKRLV 497

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + +IF  +K N   L  +L+   F +  +HG++DQ  R K+++NFK+  + ++
Sbjct: 498 SFTTEG-SVLIFVTKKANSEELASNLKTHDFDLGLLHGDMDQSERNKVITNFKKQQMPIL 556

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TLV ++D+     
Sbjct: 557 VATDVAARGLDIPSIKTVVNYDVARDIDTHTHRIGRTGRAGIKGTAYTLVTQKDVNFAGD 616

Query: 360 IEKLIE---KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           + + +E   ++V     DL+  N    K   A+H   +K      +  G+  R
Sbjct: 617 LVRNLEGAGQRVPEKLMDLAMQNSWFRK---ARHRKGKKGRTNRSRGLGYKER 666


>gi|50123133|ref|YP_052300.1| ATP-dependent RNA helicase RhlB [Pectobacterium atrosepticum
           SCRI1043]
 gi|56749479|sp|Q6CZD9|RHLB_ERWCT RecName: Full=ATP-dependent RNA helicase rhlB
 gi|49613659|emb|CAG77110.1| putative ATP-dependent RNA helicase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 430

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 138/420 (32%), Positives = 214/420 (50%), Gaps = 10/420 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P+V+ A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPQVIEALESKGFHYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +   PR LI+ PTRELA Q+  + E       L + L  GG  ++ Q K
Sbjct: 70  YLLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+L+ T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P T
Sbjct: 130 VLENGVDILVGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAT 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 SQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRITEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F +G+I 
Sbjct: 249 TLLEEEWPDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGSID 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG+ G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHA-RKNNPIPQKSTGFDRRKKN 412
            AIE  I   +     +    ++ L  P       + N+  R++N  P++S      +K 
Sbjct: 369 PAIETYIGHGIPLSKYNSDALMNDLPAPKRLTRPPRSNNGPRRHNSAPRRSGAPRNNRKR 428


>gi|290477139|ref|YP_003470054.1| putative ATP-dependent helicase with nucleoside triP hydrolase
           domain [Xenorhabdus bovienii SS-2004]
 gi|289176487|emb|CBJ83296.1| putative ATP-dependent helicase with nucleoside triP hydrolase
           domain [Xenorhabdus bovienii SS-2004]
          Length = 427

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 135/416 (32%), Positives = 215/416 (51%), Gaps = 9/416 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKV+ A+   G+   TPIQ  T+P  ++  DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVIEALDKKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKTLAFLTSTFH 69

Query: 62  ILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L         +   PR LI+ PTRELA Q+  + E+  +   L + L  GG  ++ Q K
Sbjct: 70  YLLTHPAAADHKTNQPRALIMAPTRELAVQIYSDAEELAEATGLKMGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D++I T GR++D+  +G + +N ++++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDIVIGTTGRLIDYTKQGYVNLNAVQVVVLDEADRMYDLGFIKDIRWLFRRMPVA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q +    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 AQRMNLLFSATLSYRVRELAFEQMNSPEYVEVEPLQ-KTGHRIQEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLLEEEWPDRCIIFANTKHRCEDIWAHLAADGHRVGLLTGDVAQKKRLRILEEFSLGNLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPFVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            +IE+ I+ ++     +    L  L  P  +       H R+ N   + +   +R+
Sbjct: 369 TSIEEYIQHQIPVSKYNSDALLMDLPVPKRRNRARSGGHPRRTNMSRRGNPTRNRK 424


>gi|262172952|ref|ZP_06040629.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus MB-451]
 gi|261890310|gb|EEY36297.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus MB-451]
          Length = 464

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 169/392 (43%), Positives = 243/392 (61%), Gaps = 10/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPRVRANQVRALILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADVLVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C         KK   +   L
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADV---KKKPAMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 238 VKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDI 387
           IE+L +  +  +N  L+   P    P  K+D 
Sbjct: 358 IERLTQALLPRIN--LAGFEPTNLLPESKLDT 387


>gi|258620096|ref|ZP_05715135.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
 gi|258587454|gb|EEW12164.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
          Length = 464

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 169/392 (43%), Positives = 243/392 (61%), Gaps = 10/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R    R LIL PTRELAAQ+ DN   YG++  L  A++ GG+    Q +++
Sbjct: 61  ELLAKGPRVRANQVRALILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GADVL+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADVLVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C         KK   +   L
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADV---KKKPAMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 238 VKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDI 387
           IE+L +  +  +N  L+   P    P  K+D 
Sbjct: 358 IERLTQALLPRIN--LAGFEPTNLLPESKLDT 387


>gi|303844|dbj|BAA02152.1| eukaryotic initiation factor 4A [Oryza sativa Japonica Group]
 gi|12381900|dbj|BAB21260.1| eukaryotic initiation factor 4A [Oryza sativa]
          Length = 413

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 191/377 (50%), Gaps = 6/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 42  SFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     V   + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 102 QLDYA---VVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS 158

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 159 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVG 218

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 219 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDL---Y 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +       +     + V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 ETLAITQSVIFVNTRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ L  +++ L
Sbjct: 396 RFYNVVIEELPANVADL 412


>gi|330987668|gb|EGH85771.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 442

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 145/374 (38%), Positives = 216/374 (57%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV ++  +Y ++  L+     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A ++            K+ A L   
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSV---KQWVVTVDKKRKADLFIH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +      ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 238 LMKKHRWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVDWLN 372
           AIE L  + ++   
Sbjct: 358 AIEVLTRQTLERKE 371


>gi|307720439|ref|YP_003891579.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978532|gb|ADN08567.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 518

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 146/437 (33%), Positives = 235/437 (53%), Gaps = 31/437 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGL P+++ +V  AG+  P+PIQ + IP++L+  D+ G A TGTGKTA+F LP+L
Sbjct: 19  ITFDSLGLKPEILKSVKFAGFTIPSPIQAQAIPIILEGRDMVGQAHTGTGKTAAFSLPVL 78

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + ++           L++ PTRELA QV+D   KYG+N  +    + GG  ++ Q   + 
Sbjct: 79  SNMKLD----GSVEMLVITPTRELATQVSDEIFKYGRNLGVKTVTVYGGSSYKRQLDLIG 134

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR+LD   R  L      ++V+DEAD MLDMGF+  I  I S +P  RQT
Sbjct: 135 RGASVVVATPGRMLDLLKRNMLNNFAPSVVVLDEADEMLDMGFLDDINEIFSYLPTNRQT 194

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ ++   L++P  + +    +T   IE  +            +      
Sbjct: 195 LLFSATMPQPIKNLANRILKDPAFVSITKGETTNTDIEQEYYVIDEHERDDAIIRL---M 251

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  K  ++FC  K  V  L + L   G+    +HG+++QR R  ++  FK  +++++V
Sbjct: 252 DAEDTKKAVVFCRTKSEVDRLSNVLSNAGYLANGLHGDMEQRQRETVIKGFKNDSVKVLV 311

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ + ++ HVFN+ +P   E+Y+HRIGRTGRAG  GKA TL+   + K +  I
Sbjct: 312 ATDVAARGIHVNNISHVFNYHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRI 371

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           ++ +   +                      NHA   +    K++  D+  K+   QK + 
Sbjct: 372 KQKVGTSM----------------------NHAFVPSKNDLKASTVDKMVKSIEDQKIYD 409

Query: 421 PLKESEKISKLQQDIQE 437
              +   + +L++DI E
Sbjct: 410 EAHK--VLDRLKEDIDE 424


>gi|298488858|ref|ZP_07006883.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298156611|gb|EFH97706.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 442

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 145/374 (38%), Positives = 216/374 (57%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV ++  +Y ++  L+     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A ++            K+ A L   
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSV---KQWVVTVDKKRKADLFIH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +      ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 238 LMKKHRWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVDWLN 372
           AIE L  + ++   
Sbjct: 358 AIEVLTRQTLERKE 371


>gi|257482171|ref|ZP_05636212.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 442

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 145/374 (38%), Positives = 216/374 (57%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV ++  +Y ++  L+     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A ++            K+ A L   
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSV---KQWVVTVDKKRKADLFIH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +      ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 238 LMKKHRWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVDWLN 372
           AIE L  + ++   
Sbjct: 358 AIEVLTRQTLERKE 371


>gi|71734815|ref|YP_276470.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555368|gb|AAZ34579.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 450

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 145/374 (38%), Positives = 216/374 (57%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 9   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 68

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV ++  +Y ++  L+     GG+    Q  K
Sbjct: 69  QRLTMEGPKVAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 128

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 129 LRKGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 188

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A ++            K+ A L   
Sbjct: 189 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSV---KQWVVTVDKKRKADLFIH 245

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +      ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 246 LMKKHRWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 305

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 306 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 365

Query: 359 AIEKLIEKKVDWLN 372
           AIE L  + ++   
Sbjct: 366 AIEVLTRQTLERKE 379


>gi|120555341|ref|YP_959692.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120325190|gb|ABM19505.1| ATP-dependent RNA helicase CsdA [Marinobacter aquaeolei VT8]
          Length = 528

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 158/465 (33%), Positives = 246/465 (52%), Gaps = 31/465 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+LGL P V+ AV   GY  P+PIQ ++IP +L  + + G+AQTGTGKTA+F LP+L
Sbjct: 24  LSFAELGLDPAVLEAVSAVGYETPSPIQAQSIPALLAGNHLLGVAQTGTGKTAAFALPLL 83

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + ++     V  P+ L+L PTRELA QVA+ F  Y   +     L I  G  F  Q + L
Sbjct: 84  SRIDAN---VAEPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFSPQIRGL 140

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA V++ TPGR+LDH  +G L ++ ++ LV+DEAD ML MGFI  ++ I +  P T Q
Sbjct: 141 KRGAQVIVGTPGRMLDHLRKGTLKLDGLKALVLDEADEMLRMGFIDDVEAILAKTPDTCQ 200

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  +++KV++ +L+N   + + + + T E I          Y+++       +
Sbjct: 201 RALFSATMPPQIKKVAQTYLKNATEVRIESETRTVERI---AQFVLPVYAERKLDALTRI 257

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K     L   L  +G +V  + G+++QR R + + + K G   ++
Sbjct: 258 LEVEPFDASIIFVRTKAETTMLAEKLSARGHAVAPLSGDLNQRQREQTVEDLKRGKKDII 317

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+P + HV N+DVP   E YIHR+GRTGRAGR GKA  LV   +   +  
Sbjct: 318 IATDVAARGLDVPRITHVINYDVPYDTEAYIHRVGRTGRAGRTGKAILLVTPRERSWLRT 377

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E+     ++     L S    L+K+ + Q                F+ +   ++     
Sbjct: 378 LERATNSPME--PYQLPS-PAALQKMRVEQ----------------FEAQLLGFTDD--- 415

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
              + ++ I+ L +  + ND D     G M   +       L  +
Sbjct: 416 --PRAAKAIALLDEIAERNDMDMAAIAGAMACLLEASQPDSLPLE 458


>gi|297814273|ref|XP_002875020.1| hypothetical protein ARALYDRAFT_490504 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297320857|gb|EFH51279.1| hypothetical protein ARALYDRAFT_490504 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 507

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 116/375 (30%), Positives = 198/375 (52%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P+L 
Sbjct: 134 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLE 193

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++      + + +I+ PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 194 KIDQDN---NVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQ 250

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P ++++ S +P  RQ L
Sbjct: 251 PVHLLVGTPGRILDLAKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPENRQIL 310

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++   + FL NP  I          T++           ++       L S
Sbjct: 311 MFSATFPVTVKDFKDRFLTNPYVI----NLMDELTLKGITQFYAFVEERQKIHCLNTLFS 366

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 367 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 426

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 427 TDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 486

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 487 QELGTEIKQIPPHID 501


>gi|307173398|gb|EFN64357.1| Probable ATP-dependent RNA helicase DDX5 [Camponotus floridanus]
          Length = 639

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 127/379 (33%), Positives = 203/379 (53%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +    P V+  +   GY +PTPIQ +  P+ L   D+  IAQTG+GKT  ++LP +  
Sbjct: 140 FEEGNFPPYVMEGIRRQGYSQPTPIQAQGWPIALSGRDLVAIAQTGSGKTLGYILPAIVH 199

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +           P  L+L PTRELA Q+ +    +G+   +    + GG P   Q   LE
Sbjct: 200 IIHQPRLSNGDGPIVLVLAPTRELAQQIQEVANCFGETAAVRNTCIFGGAPKGPQAHDLE 259

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 260 RGIEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 319

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLL 239
           L++SAT   E++ ++E+FL +   + + + + +A       +    +Y K          
Sbjct: 320 LMWSATWPKEVRALAEDFLTDYVHLNIGSLTLSANHNITQIIDVCHEYEKDSKLYRLLQE 379

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+ V ++  ++ + G+   +IHG+ +Q+ R  +L  F+ G   ++
Sbjct: 380 IGTEKENKTIIFVETKRKVDDITRNIRRDGWQAVSIHGDKNQQERDHVLQEFRSGRAPIL 439

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV +V NFD P+ +E+YIHRIGRTGR  + G A+      ++KH   
Sbjct: 440 VATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGRRRQTGTAYAFFTSHNMKHAGD 499

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + +++ +    +N  LS +
Sbjct: 500 LIEVLREAGQNVNPRLSEM 518


>gi|153837953|ref|ZP_01990620.1| RhlE [Vibrio parahaemolyticus AQ3810]
 gi|260902800|ref|ZP_05911195.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|149748644|gb|EDM59503.1| RhlE [Vibrio parahaemolyticus AQ3810]
 gi|308108629|gb|EFO46169.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
          Length = 411

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 155/420 (36%), Positives = 241/420 (57%), Gaps = 10/420 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV   GY KPT IQ K IP+VL+  ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSAPITDAVTALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G   R +  R +IL PTRELA QV  + E YGKN  L    + GG+ +  Q + L
Sbjct: 61  EKLSQGETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVEYAPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR++D + +  +  + +E+LV+DEAD+MLDMGFI  I  I   +P   Q
Sbjct: 121 IEGVDIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIIDCMPEDVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT+++ ++ +++N + +P+ I   T +  + +  +             + L   +
Sbjct: 181 SLLFSATLSNPVRDLAKNAIVDPEEI---TIAKHSASKSNIKQWITTVDKDMKSSLLSHM 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++     +IF   K     L   LEK+G    A H   +QR R +++  FK G IQ +
Sbjct: 238 LNENDWSQVLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI ++  V N+D+P  A+ Y+HRIGRTGRAG  G+A +LV+K+D K++  
Sbjct: 298 VATGVAARGIDIDNLPVVINYDLPFPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCM 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE  +   ++ +  +      P + + I+  N+  KN   PQ +     R++N   + + 
Sbjct: 358 IESRLGHLLERVEIE---GFVPRKPVPISILNYVPKNKRKPQDNR---LRRENSEPRDAK 411


>gi|148244979|ref|YP_001219673.1| ATP-dependent RNA helicase DeaD [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326806|dbj|BAF61949.1| ATP-dependent RNA helicase DeaD [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 608

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 146/372 (39%), Positives = 221/372 (59%), Gaps = 6/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLS  ++  +   GY  P+PIQ + I  +L   D+ G AQTGTGKTA+FVLP+L 
Sbjct: 13  KFERLGLSNTILNVLDSIGYETPSPIQEQCITHLLNNKDIIGQAQTGTGKTAAFVLPLLD 72

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            +      +  P+ LIL PTRELA QV++  + Y +       L I G   ++ Q + L+
Sbjct: 73  KINLN---INAPQLLILAPTRELAIQVSEAVQTYARGMKGFHVLPIYGGQSYDIQLRPLK 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG   ++ TPGR++DH  +  L ++N++  V+DEAD ML MGFI  I+ I   +P  RQ 
Sbjct: 130 RGVHAIVGTPGRVMDHIEKKTLKLDNLKSFVLDEADEMLKMGFIDDIKWIMQRIPEQRQI 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + ++K+++ FL  PK I++ T + TA TI   +       +K  AL + L  
Sbjct: 190 ALFSATMPNVIKKIAKQFLNQPKIIKIKTKTETATTITQKYCMVGGLSNKLEALTRILEV 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       IIF   K     L   L  +GFS  AI+G+I Q  R +I++++K+G I +++
Sbjct: 250 TVFDAM--IIFVRTKTLTTELTEKLSARGFSADAINGDIQQNQRERIINDYKQGKIDILI 307

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P  AE+Y+HRIGRTGRAGR G+A   V+  + + ++ I
Sbjct: 308 ATDIAARGLDVERISHVVNYDIPQDAESYVHRIGRTGRAGRKGEAILFVSNRERRMLNTI 367

Query: 361 EKLIEKKVDWLN 372
           E +  +K+  + 
Sbjct: 368 EHVTRQKITPIE 379


>gi|66047019|ref|YP_236860.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
 gi|63257726|gb|AAY38822.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
 gi|330971079|gb|EGH71145.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 445

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 138/437 (31%), Positives = 213/437 (48%), Gaps = 15/437 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 2   FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L          R +IL PTRELA Q     E++ +   +   L+ GG  F+ Q   L + 
Sbjct: 62  LIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI TPGR+L+  N G L + ++E+LV+DEADRMLDMGF   ++ +        QT+L
Sbjct: 122 PDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTML 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT T                  +   S +            A ++     +   L + 
Sbjct: 182 FSAT-TGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLAN 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T +  IIF N K     L   L    +    +HG+ DQ+ R   +   K+G  ++MVA+
Sbjct: 241 ETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVAT 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  +  V NFD+P   ++Y+HR+GRTGRAG  G A +L+   D   + ++E+
Sbjct: 301 DVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVER 360

Query: 363 LIEKK-----VDWLNGDLSSLNPPLEKIDI---------AQHNHARKNNPIPQKSTGFDR 408
            +++      +  + G                       A+ +  +     P K    +R
Sbjct: 361 YLKQSFERRVIKEVKGTYGGPKKVKASGKAVGVKKKKTDAKGDKKKVAAKGPTKRKTVNR 420

Query: 409 RKKNYSSQKSHIPLKES 425
            K +  SQ    PLK+ 
Sbjct: 421 PKSDLVSQDGMAPLKKR 437


>gi|47678395|emb|CAG30318.1| DDX17 [Homo sapiens]
 gi|109451124|emb|CAK54423.1| DDX17 [synthetic construct]
 gi|109451702|emb|CAK54722.1| DDX17 [synthetic construct]
 gi|119580647|gb|EAW60243.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_c [Homo
           sapiens]
 gi|169145045|emb|CAQ08924.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
 gi|208967743|dbj|BAG72517.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [synthetic construct]
          Length = 652

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 206/379 (54%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 214 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL++  +I V     +A       V    +  K   L+Q + +
Sbjct: 274 LMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 333

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    
Sbjct: 394 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 453

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E+    +N  L  L
Sbjct: 454 LIKVLEEANQAINPKLMQL 472


>gi|70731602|ref|YP_261343.1| DEAD-box ATP dependent DNA helicase [Pseudomonas fluorescens Pf-5]
 gi|68345901|gb|AAY93507.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           fluorescens Pf-5]
          Length = 557

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 149/386 (38%), Positives = 234/386 (60%), Gaps = 9/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++  +     P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPSKRE---PQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++PK +++ + + T   IE   +  +A       L       
Sbjct: 185 LFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLL---E 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKI 385
           ++  +KV    L    + L+  ++K+
Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKL 387


>gi|71907449|ref|YP_285036.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71847070|gb|AAZ46566.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 447

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 152/386 (39%), Positives = 226/386 (58%), Gaps = 7/386 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL+  ++ A+   GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFSSLGLAAPLLQALETLGYETPTPIQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPIL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +   +V     R L+L PTRELA QV  +F +YG++  ++     GG+    Q  +
Sbjct: 61  QRLSESEDKVASNSIRVLVLVPTRELAEQVHASFRQYGEHLAVSTYAAYGGVSINPQMMR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG DVL+ TPGR++D F +  +    ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRRGVDVLVATPGRLIDLFTQNAIKFKQVQTLVLDEADRMLDLGFAHELDTLFAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ +++  L++P  IEV   +ST + I            K+   L   
Sbjct: 181 QTLLFSATFSDEIRSLAKGRLRDPLSIEVAPRNSTVKAI---KQWVVPVDKKRKTELFLF 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++        ++F   ++ V  L  +L  +     AIHG+  Q +R++ L +FK G +Q+
Sbjct: 238 MRKDRKWGQVLVFVKTRRGVDELVATLLAKKIKADAIHGDKPQPARLRALESFKAGEVQI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N+D+P  AE+YIHRIGRTGRAG  G+A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPQVVNYDLPIVAEDYIHRIGRTGRAGATGQAISLVCADEAPLLA 357

Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPL 382
           AIE LI++ +  +   G       PL
Sbjct: 358 AIETLIKQTLSREEEPGFEPDHRVPL 383


>gi|297261056|ref|XP_001092491.2| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Macaca
           mulatta]
 gi|297708870|ref|XP_002831174.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Pongo
           abelii]
 gi|332859781|ref|XP_525595.3| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Pan
           troglodytes]
 gi|3122595|sp|Q92841|DDX17_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX17; AltName:
           Full=DEAD box protein 17; AltName: Full=DEAD box protein
           p72; AltName: Full=RNA-dependent helicase p72
 gi|1592565|gb|AAC50787.1| DEAD-box protein p72 [Homo sapiens]
 gi|2832596|emb|CAB09792.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
 gi|119580650|gb|EAW60246.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_f [Homo
           sapiens]
          Length = 650

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 206/379 (54%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 214 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL++  +I V     +A       V    +  K   L+Q + +
Sbjct: 274 LMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 333

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    
Sbjct: 394 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 453

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E+    +N  L  L
Sbjct: 454 LIKVLEEANQAINPKLMQL 472


>gi|302839493|ref|XP_002951303.1| hypothetical protein VOLCADRAFT_120953 [Volvox carteri f.
           nagariensis]
 gi|300263278|gb|EFJ47479.1| hypothetical protein VOLCADRAFT_120953 [Volvox carteri f.
           nagariensis]
          Length = 414

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 193/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+ KP+ IQ K I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 42  SFDQMNLHENLLRGIYAYGFEKPSAIQAKGIVPFTKGLDVIQQAQSGTGKTATFCAGILN 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+         + L+L PTRELA Q+       G    +     +GG       + L  
Sbjct: 102 NLDYNLNE---CQALVLAPTRELAQQIEKVMRALGDFLQVKCHACVGGTSVREDARILGA 158

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 159 GVQVVVGTPGRVFDMLRRRYLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKLQVG 218

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 219 VFSATLPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVDVDKEEWKLDTLCDL--YE 276

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   + ++  +V A HG+++Q +R  I+  F+ G+ ++++ 
Sbjct: 277 TLAITQSVIFANTRRKVDWLTEKMRERDHTVSATHGDMEQNARDVIMREFRSGSSRVLIT 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   + KED + +  I+
Sbjct: 337 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFIVKEDERMLQDIQ 396

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     V+ L  +++ L
Sbjct: 397 RFYNTVVEELPSNVADL 413


>gi|290989740|ref|XP_002677495.1| dead box ATP-dependent RNA helicase [Naegleria gruberi]
 gi|284091103|gb|EFC44751.1| dead box ATP-dependent RNA helicase [Naegleria gruberi]
          Length = 618

 Score =  163 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 122/376 (32%), Positives = 198/376 (52%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF + GL  +++  + + G+ +P+PIQ +T+PL L   D+   A+ GTGKTA+F++P L 
Sbjct: 245 DFEEFGLKRELLMGIFEKGFERPSPIQEQTVPLALFGRDILARAKNGTGKTAAFIIPCLE 304

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  + +++    LIL PTRELA Q +   ++ GK  N+ V +  GG   +    +L +
Sbjct: 305 RVDTSKNQIQ---ILILVPTRELALQTSHVCKEIGKYLNVEVMVTTGGTSLKDDIVRLYK 361

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRI+D  ++G   +NN+ +LV+DEAD++L   F+P I+ + S VP +RQ L
Sbjct: 362 PVHILVGTPGRIIDLASKGVANLNNVSMLVMDEADKLLSPEFVPLIEKLISFVPPSRQIL 421

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F                 T++           ++       L S
Sbjct: 422 LFSATFPITVKD----FRDKWLTKPYEINLMDELTLKGVTQYYAFVEERQKVHCLNTLFS 477

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 478 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMPQDLRNRVFHDFRNGACRNLVS 537

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A   V  ED  ++  IE
Sbjct: 538 SDLFTRGIDIQAVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINFVTYEDRFNLYKIE 597

Query: 362 KLIEKKVDWLNGDLSS 377
           + +  ++  +   +  
Sbjct: 598 QELGTEIKPIPPTIDK 613


>gi|309262543|ref|XP_003085827.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Mus
           musculus]
 gi|309271943|ref|XP_003085450.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Mus
           musculus]
          Length = 670

 Score =  163 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 137/441 (31%), Positives = 219/441 (49%), Gaps = 6/441 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 149 LKFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 208

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 209 VHIIHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 268

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 269 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 328

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L+  +
Sbjct: 329 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLILLM 388

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +LS FK G   
Sbjct: 389 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLSEFKHGKAS 448

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK  
Sbjct: 449 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQA 508

Query: 358 DAIEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N  L  L                  R++     K  GF+  +   +
Sbjct: 509 SDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 568

Query: 415 SQKSHIPLKESEKISKLQQDI 435
             + +  L + +  +K Q D+
Sbjct: 569 YDRGYSNLLKRDFGAKTQNDV 589


>gi|237716826|ref|ZP_04547307.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262405596|ref|ZP_06082146.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644524|ref|ZP_06722278.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC
           2a]
 gi|294805785|ref|ZP_06764662.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229442809|gb|EEO48600.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262356471|gb|EEZ05561.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640077|gb|EFF58341.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC
           2a]
 gi|294447006|gb|EFG15596.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 643

 Score =  163 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 153/471 (32%), Positives = 252/471 (53%), Gaps = 39/471 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP+L
Sbjct: 3   TFEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++    + R+P++LIL PTREL  Q+A +   Y K  +    L + G    ++Q + L
Sbjct: 63  QQIDV---KNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD   R  + ++ I  +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KRGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTDSINAILADVPQERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+N+L+N K I +   +   E+  +     Y   +K      + +
Sbjct: 180 TLLFSATMSPEIARISKNYLRNAKEITIGRKN---ESTNNVKHVVYTVQAKDKYEALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+
Sbjct: 237 VDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRICNLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKLRE 356

Query: 360 IEKLIEKKVDWLNGDLS-----------SLNPPLEKIDIAQHNHARKNNPIPQK------ 402
           IE++I KK  ++ G++             +   LEK+ + +   A     I +K      
Sbjct: 357 IERIIGKK--FITGEMPTAAGICQKQLIKVIDDLEKVKVNEEEIAGFMPEIYRKLEWLSK 414

Query: 403 --------STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGF 445
                   S  F+R    ++    H P  E   I    +  +++D    GF
Sbjct: 415 EDLIKRVVSHEFNR----FAEYYRHRPEIEQPTIESRSERARKSDRKENGF 461


>gi|88799091|ref|ZP_01114671.1| DEAD/DEAH box helicase-like protein [Reinekea sp. MED297]
 gi|88778074|gb|EAR09269.1| DEAD/DEAH box helicase-like protein [Reinekea sp. MED297]
          Length = 579

 Score =  163 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 136/369 (36%), Positives = 211/369 (57%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL+P ++  +   GY  PTPIQ + I  +L  +DV G+AQTGTGKTA+F LP+L
Sbjct: 5   LTFADLGLAPVLLKTLDSLGYETPTPIQSQAIVQLLDGNDVLGLAQTGTGKTAAFSLPLL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + ++  + +   P+ L+L PTRELA QVA+ F+ Y +  +    L I  G     Q + L
Sbjct: 65  SRIDTTKNK---PQALVLCPTRELAIQVAEAFQTYARGVDNFHVLPIYGGADMRNQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   V++ TPGR++DH  RG L +++++ LV+DEAD ML MGFI  I  I    P  +Q
Sbjct: 122 KQNPQVIVGTPGRVMDHLRRGTLDLSDLKHLVLDEADEMLRMGFIEDIDWILEHTPKDKQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM  +++++++ + ++P +IE+    S  + IE                    +
Sbjct: 182 TALFSATMPHQIKRITDQYQKDPVKIEIKASHSELQQIEQLVWRARGLDK---LDGLTRI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   +     L   L  +G++  A+ G + Q+ R  ILS  K+G + ++
Sbjct: 239 LEIEDWNAIIIFVRTRVECQFLSEKLAARGYAATALSGEVAQKQREDILSAMKKGKLDII 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI  + HV N+D+P     Y HRIGRTGRAGR GKA       + + I  
Sbjct: 299 IATDVAARGIDIERITHVINWDIPGDVSTYTHRIGRTGRAGRSGKAILFCKPREQRIIRD 358

Query: 360 IEKLIEKKV 368
           IE+  + ++
Sbjct: 359 IERATKSEL 367


>gi|330953563|gb|EGH53823.1| helicase [Pseudomonas syringae Cit 7]
          Length = 557

 Score =  163 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 149/386 (38%), Positives = 234/386 (60%), Gaps = 9/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++  +     P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPSKRE---PQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P +RQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPESRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++PK +++ T + T   IE   +  +A       L       
Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL---E 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKI 385
           ++  +KV    L    + L+  ++K+
Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKM 387


>gi|323342110|ref|ZP_08082343.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464535|gb|EFY09728.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 475

 Score =  163 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 154/376 (40%), Positives = 225/376 (59%), Gaps = 6/376 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F DLG++ K++ A+ + GY KPTPIQ + IP +L+ +D+ G+AQTGTGKTA+F +P L
Sbjct: 1   MEFKDLGINEKILQALTEQGYEKPTPIQEQAIPTLLKHNDLIGLAQTGTGKTAAFAVPTL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                    R   R  R L+L PTRELA Q+ +NFE YGK  +L   ++ GG+    Q K
Sbjct: 61  QNLKEKAFDRNGKRKIRALVLTPTRELAIQIQENFEMYGKYMDLRSTVVFGGVAQRYQVK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D LI TPGR+ D  ++G + ++ IEI ++DEADRMLDMGFI  ++ I   +P  
Sbjct: 121 ALRNGVDTLIATPGRLEDLMSQGYIDLSQIEIFILDEADRMLDMGFINDVKRIIKKLPKK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTLLFSATM  E+  ++E  L NP  + V   SST ET+E           +    L  
Sbjct: 181 KQTLLFSATMPSEISSIAEMLLNNPTTVAVTPVSSTVETVEQSVYYVDQ---RNKTQLLI 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +    +  + ++F   K+    +   L +   +  AIHG+  Q +R + LS FK+GTI 
Sbjct: 238 DVLENKSFDSVLVFTRTKRGADRVARDLCRSNINAVAIHGDKSQGARQRALSGFKDGTIN 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MVA+D+AARG+DI ++ +V N+++P   E Y+HRIGRTGRAG  G A +    E+I  +
Sbjct: 298 VMVATDIAARGIDINELKYVVNYELPEVPETYVHRIGRTGRAGFSGAAISFCNFEEIPLL 357

Query: 358 DAIEKLIEKKVDWLNG 373
             IE +I+ +V  +  
Sbjct: 358 KDIEHVIQMRVPVIKS 373


>gi|242215165|ref|XP_002473400.1| eukaryotic translation initiation factor 4A-like protein [Postia
           placenta Mad-698-R]
 gi|220727497|gb|EED81414.1| eukaryotic translation initiation factor 4A-like protein [Postia
           placenta Mad-698-R]
          Length = 501

 Score =  163 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 7/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F ++ L  +++  + +AG+ KP+PIQ + IP+ L + DV   A+ GTGKTA+FV+P L
Sbjct: 43  LEFDEMFLRRELLMGIYEAGFEKPSPIQEEAIPIALTKRDVLARAKNGTGKTAAFVIPSL 102

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  + +++    L+L PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 103 QQVDITKNKIQ---ALLLVPTRELALQTSQVCKILGKHMGVQVMVTTGGTTLKDDIIRLS 159

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               VL+ TPGRILD   +    ++   + V+DEAD++L   F P ++ + S +P  RQ 
Sbjct: 160 ETVHVLVGTPGRILDLAGKNVADLSECPVFVMDEADKLLSPEFAPVMEQLLSYLPKDRQV 219

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F     +           T+            ++       L 
Sbjct: 220 MLFSATFPLIVKD----FKDKHMKSPYEINLMDELTLRGVTQYYAYVEERQKVHCLNTLF 275

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q  R ++  +F+ G  + +V
Sbjct: 276 SKLQINQSIIFCNSTNRVELLAKKVTELGYSCFYSHAKMLQSHRNRVFHDFRNGVCRNLV 335

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  LV  ED  ++  I
Sbjct: 336 CSDLLTRGIDIQAVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINLVTYEDRFNLYKI 395

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +   +  
Sbjct: 396 EQELGTEIQPIPQYIDK 412


>gi|119773945|ref|YP_926685.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           amazonensis SB2B]
 gi|119766445|gb|ABL99015.1| DEAD/DEAH box helicase domain protein [Shewanella amazonensis SB2B]
          Length = 432

 Score =  163 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 142/437 (32%), Positives = 236/437 (54%), Gaps = 23/437 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F     +P+++ A+ + GY   TPIQ   IP V +  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MKFESYSFAPEILQALAECGYETMTPIQRLAIPPVRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                          R LIL PTREL  Q+A+N + Y K+  L V  + GG   + Q +K
Sbjct: 61  QKLLDTPKAREATKARALILAPTRELTEQIANNIKAYAKHLELAVTTVFGGGKTDVQAQK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+++ TPGR+L+H   G L +  +E LV+DEADRMLDMGFI  IQ +       R
Sbjct: 121 LRKGTDIIVATPGRLLEHLLAGNLSLAAVEFLVLDEADRMLDMGFIADIQKLIQACNKER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT +  ++K+++  ++    +  +  ++ A T+         +  ++       
Sbjct: 181 QTLMFSATFSGGVRKLADEIMKKHTVLTADRHNTAATTVSQVVYPVEQRRKRELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   +  ++F   +++   L   L   G     IH    Q +R + L +F EG I++
Sbjct: 239 -IGRKNWQRVLVFSATREDCEKLTEELNLDGIPSAVIHSEKAQGTRRRALKDFTEGKIRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V++++AARGLDIPD+ +V NFD+P   E+Y+HR+GRTGRAG+ G A + V++E+ + + 
Sbjct: 298 LVSTEVAARGLDIPDLEYVVNFDLPFLPEDYVHRVGRTGRAGKSGVAISFVSREEERTLA 357

Query: 359 AIEKLIEKKVDWLNG---DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            IEKLI +++  +     ++S+ +  L+++               QK   F ++ +  S 
Sbjct: 358 DIEKLIGQRLKRIVMPGYEVSNRDLLLKQL---------------QKRRSFAKKTRVESD 402

Query: 416 QKSHIPLKESEKISKLQ 432
             + +  ++S    +++
Sbjct: 403 AIAQVAAEKSMAGRRVK 419


>gi|242080665|ref|XP_002445101.1| hypothetical protein SORBIDRAFT_07g004090 [Sorghum bicolor]
 gi|241941451|gb|EES14596.1| hypothetical protein SORBIDRAFT_07g004090 [Sorghum bicolor]
          Length = 1062

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 136/448 (30%), Positives = 230/448 (51%), Gaps = 12/448 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   GL+ K++  +   G+ KP PIQ + +P+++   D  GIA+TG+GKT +FVLPML 
Sbjct: 438 TWVQSGLTSKLLDTIKKLGFEKPMPIQTQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLR 497

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++     V    P  LI+ PTREL  Q+  + +K+ K   +    + GG     Q  +L
Sbjct: 498 HVKDQPPVVPGDGPIGLIMAPTRELVVQIHSDIKKFSKVLGINCVAIYGGSGVAQQISEL 557

Query: 120 ERGADVLICTPGRILDHFNR---GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D           +  +  LV+DEADRM DMGF P I  I      
Sbjct: 558 KRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNTRP 617

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT   +++ ++   L  P  I+V   S   + I            ++   L 
Sbjct: 618 DRQTVLFSATFPRQVEILARKVLTKPVEIQVGGRSVVNKDITQLVEVRPDT--ERFFRLL 675

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL         ++F + +    +L   L + G+   ++HG  DQ  R   +++FK    
Sbjct: 676 ELLGEWYVKGKILVFVHSQDKCDSLLKDLFQHGYPCLSLHGGKDQTDRESTIADFKSNVC 735

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L++A+ +AARGLD+ ++  V N+DVPN  E+Y+HR+GRTGRAGR G A T +++E+ ++
Sbjct: 736 SLLIATSVAARGLDVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKGFAVTFISEEEERY 795

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              + K +E     +  DL +L    ++          + +      +GF   ++   ++
Sbjct: 796 APDLVKALELSEQAVPQDLKALA---DRFMAKVKQGTEQAHGTGYGGSGFKFNEEEDEAR 852

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           K+    +  E     ++D  ++D+D  G
Sbjct: 853 KTAKKAQAREY--GYEEDKSDSDSDEEG 878


>gi|237798870|ref|ZP_04587331.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021724|gb|EGI01781.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 445

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 138/437 (31%), Positives = 213/437 (48%), Gaps = 15/437 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 2   FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L          R +IL PTRELA Q     E++ +   +   L+ GG  F+ Q   L + 
Sbjct: 62  LIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI TPGR+L+  N G L + ++E+LV+DEADRMLDMGF   ++ +        QT+L
Sbjct: 122 PDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTML 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT T                  +   S +            A ++     +   L + 
Sbjct: 182 FSAT-TGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLAN 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T +  IIF N K     L   L    +    +HG+ DQ+ R   +   K+G  ++MVA+
Sbjct: 241 ETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVAT 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  +  V NFD+P   ++Y+HR+GRTGRAG  G A +L+   D   + ++E+
Sbjct: 301 DVAARGLDVEGLDMVVNFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVER 360

Query: 363 LIEKK-----VDWLNGDLSSLNPPLEKIDI---------AQHNHARKNNPIPQKSTGFDR 408
            +++      +  + G                       A+ +  +     P K    +R
Sbjct: 361 YLKQSFERRVIKEVKGTYGGPKKVKASGKAVGVKKKKTDAKGDKKKVAAKGPTKRKTVNR 420

Query: 409 RKKNYSSQKSHIPLKES 425
            K +  SQ    PLK+ 
Sbjct: 421 PKSDLVSQDGMAPLKKR 437


>gi|149065924|gb|EDM15797.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_a [Rattus
           norvegicus]
          Length = 652

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 206/379 (54%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 214 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL++  +I V     +A       V    +  K   L+Q + +
Sbjct: 274 LMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 333

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    
Sbjct: 394 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 453

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E+    +N  L  L
Sbjct: 454 LIKVLEEANQAINPKLMQL 472


>gi|303390992|ref|XP_003073726.1| ATP-dependent RNA helicase [Encephalitozoon intestinalis ATCC
           50506]
 gi|303302874|gb|ADM12366.1| ATP-dependent RNA helicase [Encephalitozoon intestinalis ATCC
           50506]
          Length = 400

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 113/386 (29%), Positives = 191/386 (49%), Gaps = 6/386 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +L +   +V A    G  +PT IQ + IP+VL  +D+  ++QTG+GKT +FVLP++
Sbjct: 1   MEFDELNIDDSLVQACQRNGITRPTEIQKQVIPMVLGGNDIIAVSQTGSGKTLAFVLPIV 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + L     + R    L++ PTREL++Q+A+ F  +G        L+ G       N+  +
Sbjct: 61  SRL---LLKNRSFFCLVVAPTRELSSQIAECFNMFGSTGLRVCLLVGGTNFNLQANQLSK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+                    I  LV+DEADR  +  F+  ++ I   +   RQT
Sbjct: 118 HPHIVVGTPGRIAEHILKTKSFKAERIRKLVLDEADRFFEQDFVEDLETIIRSLREKRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLF+ATM++E+ K+S +      + +        ET+       +    K  +       
Sbjct: 178 LLFTATMSNEISKLSSSI---LIKPKTIRVVEGYETVSALKEYYFFTAMKWKSSALVEFL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +   + I+F +       +  +L K GF   A++G + Q  R + +  FKE    ++V
Sbjct: 235 EMNPGASTIVFVSMCITARVMSLALSKLGFHSEALYGELSQEKREETMRMFKENKFSVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+ +RGLDI  V  V NFDVP   ++Y+HR+GRT RAGR G A TLV + D++ +  +
Sbjct: 295 CTDVGSRGLDISHVDLVINFDVPKSGKDYVHRVGRTARAGRAGTAITLVTQYDVEQLQRV 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKID 386
           E +++K ++       +     EK++
Sbjct: 355 EFVLKKSLEEFKPVKKNFESIREKVE 380


>gi|222423092|dbj|BAH19526.1| AT4G00660 [Arabidopsis thaliana]
          Length = 374

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 116/375 (30%), Positives = 199/375 (53%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P+L 
Sbjct: 1   EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLE 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++      + + +I+ PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 61  KIDQDN---NVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQ 117

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P ++++ S +P +RQ L
Sbjct: 118 PVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQIL 177

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++   + FL NP  I          T++           ++       L S
Sbjct: 178 MFSATFPVTVKDFKDRFLTNPYVI----NLMDELTLKGITQFYAFVEERQKIHCLNTLFS 233

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 234 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 293

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 294 TDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 353

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 354 QELGTEIKQIPPHID 368


>gi|254457480|ref|ZP_05070908.1| cold-shock deAd box protein a [Campylobacterales bacterium GD 1]
 gi|207086272|gb|EDZ63556.1| cold-shock deAd box protein a [Campylobacterales bacterium GD 1]
          Length = 531

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 148/402 (36%), Positives = 220/402 (54%), Gaps = 16/402 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGLS  ++ +V  AG+V P+PIQ   IPL+LQ  D+ G A TGTGKTA+F LP L
Sbjct: 18  LTFDDLGLSQDILRSVKQAGFVTPSPIQAAAIPLILQGRDIVGQAHTGTGKTAAFGLPAL 77

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++           L++ PTRELA QV+D   KYG+N N     + GG  +  Q   ++
Sbjct: 78  NNIDVR----NGVEILVITPTRELATQVSDELFKYGRNINAKTVTVYGGSSYNRQIDLID 133

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR+LD   +G +      I+V+DEAD MLDMGF+  I  I S +P  RQT
Sbjct: 134 RGASVVVATPGRLLDILKKGLVKNFTPSIVVLDEADEMLDMGFLDDINEIFSYLPTKRQT 193

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ ++E  L NP+ I +    +T   IE  +            +      
Sbjct: 194 LLFSATMPKPIKLLAERILDNPEFISITKGETTNSDIEQLYYVIEESERDDAIIRL---M 250

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  K  ++FC  K  V  L + L   G+    +HG+++QR R  ++  FK  +++++V
Sbjct: 251 DSEDTKKSVVFCRTKSEVDRLSNVLSNAGYLANGLHGDMEQRQRETVIKGFKSNSVKVLV 310

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ + ++ HVFN+ +P   E+Y+HRIGRTGRAG  GKA TL+   + K +  I
Sbjct: 311 ATDVAARGIHVDNISHVFNYHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRI 370

Query: 361 EKLIEK---------KVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           ++ +           K D     + +L   +E   I    H 
Sbjct: 371 KQKVGTSMGHAYVPSKNDLRESTVEALVKKVEDHKIYDEAHK 412


>gi|22328183|ref|NP_191975.2| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|30678703|ref|NP_849535.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|75330763|sp|Q8RXK6|RH8_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 8
 gi|19423939|gb|AAL87312.1| putative RNA helicase [Arabidopsis thaliana]
 gi|21280839|gb|AAM45033.1| putative RNA helicase [Arabidopsis thaliana]
 gi|332656515|gb|AEE81915.1| DEAD-box ATP-dependent RNA helicase 8 [Arabidopsis thaliana]
 gi|332656516|gb|AEE81916.1| DEAD-box ATP-dependent RNA helicase 8 [Arabidopsis thaliana]
          Length = 505

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 116/375 (30%), Positives = 199/375 (53%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P+L 
Sbjct: 132 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLE 191

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++      + + +I+ PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 192 KIDQDN---NVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQ 248

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P ++++ S +P +RQ L
Sbjct: 249 PVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQIL 308

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++   + FL NP  I          T++           ++       L S
Sbjct: 309 MFSATFPVTVKDFKDRFLTNPYVI----NLMDELTLKGITQFYAFVEERQKIHCLNTLFS 364

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 365 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 424

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 425 TDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 484

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 485 QELGTEIKQIPPHID 499


>gi|66555009|ref|XP_395774.2| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Apis
           mellifera]
          Length = 566

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 204/380 (53%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  +   G+ +PT IQ +  P+ L   D+ GIA TG+GKT S++LP + 
Sbjct: 108 TFEETGFPDYVLKEIKRQGFTEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPAIV 167

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       R   P  L+L PTRELA Q+    + +G +  +    L GG P  AQ + L
Sbjct: 168 HINSQPKLGRKDGPIALVLAPTRELAQQIQQVADDFGHSSGIRNTCLYGGAPKGAQARDL 227

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G +++I TPGR+LD    G+  +     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 228 DGGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 287

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQL 238
           TL++SAT   E++ ++E+FL++  +I V +    A       +     Y K+        
Sbjct: 288 TLMWSATWPKEVKNLAEDFLKDYAQINVGSLQLAANHNILQIIDVCQDYEKENKLSTLLK 347

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               ++    I+F   K+ V  +   +++ G+    IHG+  Q+ R  +L +F+ G   +
Sbjct: 348 EIMAESENKTIVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWVLQDFRSGKAPI 407

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ DV  V NFD P+ +E+Y+HRIGRTGR  + G A+T     +    +
Sbjct: 408 LVATDVAARGLDVEDVKFVINFDYPSCSEDYVHRIGRTGRRQKTGTAYTFFTPNNSNKAN 467

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + +++++    +N  L  L
Sbjct: 468 DLIQVLKEANQVINPKLLEL 487


>gi|53804862|ref|YP_113487.1| DEAD-box ATP dependent DNA helicase [Methylococcus capsulatus str.
           Bath]
 gi|53758623|gb|AAU92914.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Methylococcus
           capsulatus str. Bath]
          Length = 453

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 177/451 (39%), Positives = 260/451 (57%), Gaps = 15/451 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL+  ++ AV +AGYV PTPIQ + IPL+L   D+   AQTGTGKTA F LP+L  
Sbjct: 12  FADLGLAQPLLRAVSEAGYVHPTPIQAQAIPLLLAGGDLLAAAQTGTGKTAGFTLPILHR 71

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              ++   R R PR LIL PTRELAAQV ++ E YGK   L   ++ GG+    Q + L 
Sbjct: 72  LLEKQAPRRPRRPRCLILAPTRELAAQVLESVEGYGKYVPLKATVMFGGVGLNPQVRALA 131

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGR+LDH  +  + ++ +EI V+DEADRMLDMGFI  I+ I  L+P  RQ 
Sbjct: 132 AGVDILVATPGRLLDHCGQNTVDLSAVEIFVLDEADRMLDMGFIRDIRRILGLLPKQRQN 191

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT +DE++ +++  L NP  +EV   ++ ++ ++        ++ +          
Sbjct: 192 MLFSATFSDEIRTLADGLLNNPGYVEVARRNAASDLVDQTVHLVAQEHKRDLLTHL---I 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  ++F   K     L   L + G    AIHGN  Q +R + L++FK+GT+ ++V
Sbjct: 249 RRHDWRQVLVFTRTKHGANRLAEKLAEDGIPAAAIHGNKSQSARTRALADFKDGTVPVLV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + HV NF++PN  E+Y+HRIGRTGRAGR G A +LVAKE++K + +I
Sbjct: 309 ATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGRAGSAVSLVAKEELKLLGSI 368

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+LI++ +    G +   NPP       + + +R+    PQ+      R+      K+  
Sbjct: 369 ERLIKRPIQR--GTVEGFNPPSRPRIERRDDRSRR----PQEVRDGGGRQSPPGQPKARA 422

Query: 421 PLKESEKISKLQQDIQENDADSL----GFRG 447
            L         Q+  Q    + L    G RG
Sbjct: 423 GLGSRSAARHAQKPQQRQAGNRLRSQGGKRG 453


>gi|330897234|gb|EGH28653.1| helicase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 557

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 146/386 (37%), Positives = 233/386 (60%), Gaps = 9/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA   L P ++ AV+  GY +P+ IQ ++IP+++  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAAFELHPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAFALPILHR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++  +     P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPSKRE---PQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P T+QT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETKQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++PK +++ T + T   IE   +  +A       L       
Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL---E 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKI 385
           ++  +KV    L    + L+  ++K+
Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKL 387


>gi|239623931|ref|ZP_04666962.1| ATP-dependent RNA helicase dbpA [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521962|gb|EEQ61828.1| ATP-dependent RNA helicase dbpA [Clostridiales bacterium 1_7_47FAA]
          Length = 481

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 130/421 (30%), Positives = 212/421 (50%), Gaps = 13/421 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    LS  ++ A+   GY  PTPIQ   IP  L   D+   +QTGTGKT +F +P+  
Sbjct: 4   NFEAYNLSQPILDALTLLGYTTPTPIQEAVIPKALNGQDIAARSQTGTGKTLAFAVPI-- 61

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             E+      +P+ L+LEPTRELA QV+      G+   L V  + GG P + Q + L +
Sbjct: 62  -CEQAVWEENLPQALVLEPTRELAVQVSREIFLVGRKKRLKVPAVFGGFPIDKQIQTLRQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + ++  TPGR++DH  RG L ++ +  LVIDEAD MLDMGF+  ++ I SL+P  R T 
Sbjct: 121 KSHIVTGTPGRVMDHLRRGSLCLSKVRFLVIDEADLMLDMGFLDEVRQILSLLPKDRSTF 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  +++++    +     I +          +        +         + +  
Sbjct: 181 LFSATLDRQVRELMGEAVSEAVFISMEDEVKVPPATQQSVYQVLQENKYNAF---KNILI 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++   + +IFC  ++ V  L   L +       IHG ++Q  R+K +  F+ G  + ++A
Sbjct: 238 KENPDSCMIFCGTREMVNVLFQKLRRDRIFCGMIHGEMEQAERLKHVDAFRRGGFRYLIA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D   +  V N+D P   E Y+HRIGRTGR G+ G+A +LV +++++ +  +E
Sbjct: 298 TDVAARGVDFEGISLVVNYDFPTGRETYVHRIGRTGRNGQSGRAVSLVTEDELRMLKKVE 357

Query: 362 KLIEKKVDWLNGDLSSLNPPLE-------KIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           + +E  +              E       K +      A  N+ I + S G  R+ K  +
Sbjct: 358 EYMETTLPVNPLPEPDQAEEKEFWALQRKKAEPKAGKDAALNHSILRLSIGGGRKSKMRT 417

Query: 415 S 415
            
Sbjct: 418 G 418


>gi|148701846|gb|EDL33793.1| mCG19408 [Mus musculus]
          Length = 615

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 137/441 (31%), Positives = 219/441 (49%), Gaps = 6/441 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LKFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 154 VHIIHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 213

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 214 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L+  +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLILLM 333

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +LS FK G   
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLSEFKHGKAS 393

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK  
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQA 453

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N  L  L                  R++     K  GF+  +   +
Sbjct: 454 SDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 513

Query: 415 SQKSHIPLKESEKISKLQQDI 435
             + +  L + +  +K Q D+
Sbjct: 514 YDRGYSNLLKRDFGAKTQNDV 534


>gi|315434409|gb|AAK73934.2|AC025726_27 Hypothetical protein Y71G12B.8 [Caenorhabditis elegans]
          Length = 739

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 155/477 (32%), Positives = 240/477 (50%), Gaps = 25/477 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  + LS +++ A   AGY  PTPIQ   IP+ L   D+C  A TGTGKTA+FVLP+L
Sbjct: 148 VSFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPIL 207

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          R L+L PTRELA QV   F K      L V L  GG+  +AQ   L 
Sbjct: 208 ERMIYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALR 267

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            G DV++ TPGR++DH  N     ++NIE+LV+DEADRML+  F   +  +  L    RQ
Sbjct: 268 SGPDVVVATPGRLIDHLHNSPSFNLSNIEVLVLDEADRMLEEAFRDQMNELIRLCAQNRQ 327

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATMT+E+ +++   LQ P +I +N  + TA  +   F+   A        +   L
Sbjct: 328 TLLFSATMTEEIDELASMSLQKPVKIFINENTDTALKLRQEFIRIRAGRETDREAMVAAL 387

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    N I+F   KK+   +   L   G  V  +  ++ Q  R++ LS FK+  I ++
Sbjct: 388 VTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKAEIDVL 447

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++DLA+RGLDI  V  V N ++P   + YIHR+GRT RAG+ G++ +LV +++ K +  
Sbjct: 448 VSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEDERKLLKE 507

Query: 360 I----------EKL--------IEKKVDWLNGDLSSLNPP---LEKIDIAQHNHARKNNP 398
           I          ++L          +++D L   +  ++      +++ IA+ + A+  N 
Sbjct: 508 IVNSNADRTLKQRLVAPEVVEAYRRRIDELEETIQQIDEEDRAEKELRIAEASMAKTQNA 567

Query: 399 IPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLP 455
           +     G    ++     K     K+ ++  K Q  +   DA         P  +  
Sbjct: 568 LEVGENGGAPAERRVWMMKESQIEKQRKREEKRQMKV---DARKKAEAAKTPEDIQI 621


>gi|213964614|ref|ZP_03392814.1| cold-shock deAd box protein a [Corynebacterium amycolatum SK46]
 gi|213952807|gb|EEB64189.1| cold-shock deAd box protein a [Corynebacterium amycolatum SK46]
          Length = 702

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 139/371 (37%), Positives = 217/371 (58%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L   +V AV   G+  P+PIQ  TIP ++   DV G+AQTGTGKTA+F LP+L  
Sbjct: 63  FDELELPDDIVNAVRKVGFETPSPIQAATIPTLMSGRDVVGLAQTGTGKTAAFALPILAR 122

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +++    VR P+ L+L PTRELA QVAD+F+ +  +      L I  G  +  Q   L R
Sbjct: 123 IDRS---VRAPQALVLAPTRELALQVADSFQSFADHLGKIQVLPIYGGQSYGVQLSGLRR 179

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  +G L ++++  LV+DEAD ML MGF   ++ I +  P  +Q  
Sbjct: 180 GAQIIVGTPGRVIDHLEKGSLDISDLRFLVLDEADEMLQMGFQEDVERILADTPDDKQVA 239

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++++S+ +L  P+ I V + + TA+ I   F+       +        +  
Sbjct: 240 LFSATMPASIRRLSKQYLTEPEEITVKSQTRTADNIRQRFLMVSH---RNKLDALTRILE 296

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  I+F   K     L   L  +GFS  AI+G+I Q  R + +   K+G + ++VA
Sbjct: 297 VEEFEAMIMFVRTKHETEELAEKLRARGFSAAAINGDIPQTLRERTIDQLKDGRLDILVA 356

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G+A   V   + + + +IE
Sbjct: 357 TDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGEALLFVTPREGRLLRSIE 416

Query: 362 KLIEKKVDWLN 372
           +  + ++  + 
Sbjct: 417 RATKSQLHEMK 427


>gi|188532510|ref|YP_001906307.1| ATP-dependent RNA helicase DeaD [Erwinia tasmaniensis Et1/99]
 gi|188027552|emb|CAO95399.1| Cold-shock DEAD-box protein A [Erwinia tasmaniensis Et1/99]
          Length = 636

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 135/378 (35%), Positives = 227/378 (60%), Gaps = 8/378 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+  ++ ++   GYVKP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 10  TFADLGLNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLH 69

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     V+ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 70  NIDPT---VKAPQILVLAPTRELAVQVAEAVTDFSKHMRGLNVVALYGGQRYDVQLRALR 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 127 QGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGHQT 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + ++++++ F+++P+ + + +  +T   I   +   Y + +       +   
Sbjct: 187 ALFSATMPEAIRRITKRFMKDPQEVRIQSSLTTRPDISQSYWTAYGRKTDALTRFLE--- 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 244 -AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 303 ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 362

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 363 ERTMKLTIPEVELPNAEL 380


>gi|28211793|ref|NP_782737.1| ATP-dependent RNA helicase [Clostridium tetani E88]
 gi|28204235|gb|AAO36674.1| ATP-dependent RNA helicase [Clostridium tetani E88]
          Length = 370

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 134/371 (36%), Positives = 212/371 (57%), Gaps = 6/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGLS  ++  +   G   PTPIQ ++I L+ + +DV   AQTGTGKT +F+LPM  
Sbjct: 3   NFKELGLSNDLIQNLKTQGINSPTPIQRESILLIKEGNDVIAEAQTGTGKTLAFLLPMFE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +      +   + LI+ PTRELA Q+ +   K  ++ +L +    GG    +Q  KL+ 
Sbjct: 63  NMSPN---INTIQGLIVTPTRELAIQITEEAMKLNESKDLNILSAYGGKDIGSQLNKLKG 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH +R  + + N++ LV+DEAD+ML MGF   ++ I       RQTL
Sbjct: 120 NIHLVIATPGRLLDHLDRNTIDLKNLKTLVLDEADQMLLMGFKNEVETIIKHTSKNRQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   ++K++  ++ +PK I +     T + I            +        + +
Sbjct: 180 CFSATMNSSVKKLAYKYMDDPKLITIQKEEITLKNI---KQVLIETTDRNKLDDLCKVLN 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      IIFC  K+ V  L   L ++G++   +HG++ Q  R K++ +FK   IQ ++A
Sbjct: 237 ETNPFMAIIFCRTKRRVDKLEMDLYQRGYNCKKLHGDLTQSKREKVMKDFKNTKIQYLIA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V H++N+D+P   ENYIHRIGRTGRAG  G A+  +  +D + ++ IE
Sbjct: 297 TDVAARGLDITGVTHIYNYDIPENTENYIHRIGRTGRAGEKGYAYLFIDLKDKETLNIIE 356

Query: 362 KLIEKKVDWLN 372
           K I+ K++ + 
Sbjct: 357 KGIKTKIERIK 367


>gi|312143554|ref|YP_003995000.1| DEAD/DEAH box helicase domain protein [Halanaerobium sp.
           'sapolanicus']
 gi|311904205|gb|ADQ14646.1| DEAD/DEAH box helicase domain protein [Halanaerobium sp.
           'sapolanicus']
          Length = 529

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 140/369 (37%), Positives = 217/369 (58%), Gaps = 7/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L +S +++ AV D G+ + TPIQ   IP VL   D+ G AQTGTGKTA+F +P+L  
Sbjct: 6   FNELDISNEILKAVDDMGFEETTPIQSNAIPAVLAGKDIVGQAQTGTGKTAAFGIPLLEE 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++  +     P+ +IL PTRELA QV++  ++  K       L +  G   + Q + L +
Sbjct: 66  MDANKKD---PQAIILCPTRELAIQVSEELKRLAKYKKRIYTLPVYGGQSIQRQIRALNK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++I TPGR++DH  RG L +N I   V+DEAD MLDMGFI  I+ +   +P  RQTL
Sbjct: 123 GVQIVIGTPGRVMDHIRRGTLKLNQINYFVLDEADVMLDMGFIDDIETVLRDIPEDRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT+   ++++S  + +N + ++V     T  +IE  +         K          
Sbjct: 183 FFSATIPKSIRRLSRKYQKNSQFLKVAHEKLTVPSIEQYYYELRRHDKLKALTRLL---D 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  I+FCN +K V  L   L+ +G+   AIHG ++Q  R +++  F+ G I+++VA
Sbjct: 240 LNNPELAIVFCNTRKMVDELNIKLQARGYLSDAIHGGLNQNQRDRVMGKFRNGIIEILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ D+  VFN+D+P   + Y+HRIGRTGRAG+ GKAF+ V  +DI  +  I+
Sbjct: 300 TDVAARGIDVDDIEAVFNYDLPQDTDYYVHRIGRTGRAGKSGKAFSFVVGKDIYKLRDIQ 359

Query: 362 KLIEKKVDW 370
           K  + K+  
Sbjct: 360 KYTKTKIKR 368


>gi|15219185|ref|NP_173078.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|75336890|sp|Q9SA27|RH36_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 36
 gi|4966350|gb|AAD34681.1|AC006341_9 Similar to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
           melanogaster and is a member of PF|00270 DEAD/DEAH box
           helicase family [Arabidopsis thaliana]
 gi|332191310|gb|AEE29431.1| DEAD-box ATP-dependent RNA helicase 36 [Arabidopsis thaliana]
          Length = 491

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 139/440 (31%), Positives = 227/440 (51%), Gaps = 13/440 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LGL+   V    + G  KPTP+Q   +P +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 59  NFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILH 118

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    V     L++ PTRELA Q+A+ F+  G   NL  ++++GG+    Q   L  
Sbjct: 119 RLAEDPYGVFA---LVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVS 175

Query: 122 GADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              ++I TPGRI            + +  + LV+DEADR+LD+GF   ++ I   +P +R
Sbjct: 176 RPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSR 235

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATMT  LQ + E+        E      T +T+   F+       +   +    
Sbjct: 236 QTLLFSATMTSNLQALLEHSSNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLVHILS 295

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                 +++ +IF +  +    L   L++      A+H    Q  R+  LS FK G + +
Sbjct: 296 QMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPI 355

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDIP V  V N+D+P    +Y+HR+GRT RAGR G A +++ + D+K I 
Sbjct: 356 LLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIH 415

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IE+ + KK++  N  +       + +++ + + A++   +     GF+ + K+    K 
Sbjct: 416 KIEEEVGKKMEPYNKKV-----ITDSLEVTKVSKAKRVAMMKMLDNGFEDKVKDRRKLKR 470

Query: 419 HIPLKES--EKISKLQQDIQ 436
                +   +K  K Q+  +
Sbjct: 471 KTLADKGLLKKRGKRQKSTE 490


>gi|88856286|ref|ZP_01130945.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
 gi|88814370|gb|EAR24233.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
          Length = 638

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 141/373 (37%), Positives = 220/373 (58%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL LS  V+ AV + GY  P+ IQ  TIP +L+  DV G+AQTGTGKTA+F LP+L
Sbjct: 17  ITFSDLALSDAVLKAVREIGYETPSAIQAATIPTLLEGRDVVGLAQTGTGKTAAFALPIL 76

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + L+  +++   P+ L+L PTRELA QV + FEKY  +      L +  G  +  Q   L
Sbjct: 77  SRLDVSQSK---PQALVLSPTRELALQVCEAFEKYATHMRGVHVLPVYGGQAYGVQLSAL 133

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG  V++ TPGRI+DH  +G L ++ ++ LV+DEAD ML MGF   ++ I +  P  +Q
Sbjct: 134 RRGVHVVVGTPGRIMDHLAKGTLDLSELKYLVLDEADEMLKMGFAEDVETILADTPEDKQ 193

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  +++++S+ +L++ + I V + ++T+      ++                +
Sbjct: 194 VALFSATMPAQIRRISKKYLRDAEEITVKSQTTTSANTSQRYLVVSYPQKVDALTRILEV 253

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++ + M   I+F   K    NL   L  +G+S  AI G++ Q  R + ++  K G + ++
Sbjct: 254 ENFEGM---IVFVRTKSETENLAEKLRARGYSAAAISGDVAQAQRERTVNQLKSGKLDIL 310

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV NFD+P   E+Y+HRIGRTGRAGR G A + V   + + + A
Sbjct: 311 VATDVAARGLDVDRISHVVNFDIPVDTESYVHRIGRTGRAGRSGSAISFVTPRERRLLTA 370

Query: 360 IEKLIEKKVDWLN 372
           IEK   + +  + 
Sbjct: 371 IEKATRQPLTQMQ 383


>gi|229100254|ref|ZP_04231145.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-29]
 gi|229115941|ref|ZP_04245337.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-3]
 gi|228667530|gb|EEL22976.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-3]
 gi|228683149|gb|EEL37136.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-29]
          Length = 450

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 140/410 (34%), Positives = 229/410 (55%), Gaps = 11/410 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           EK +   +     +     P ++++D       +       ++   D R+
Sbjct: 360 EKTLGAPIQREIIE----QPKIKRVDENGKPVPKPAPKKSGQNRQRDSRE 405


>gi|156549439|ref|XP_001603249.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 795

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 139/379 (36%), Positives = 216/379 (56%), Gaps = 2/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F   G    ++ ++    Y +PTPIQ ++IP+ L   D+ GIA+TG+GKTA+FV PM  
Sbjct: 256 SFGHFGFDDSLIKSIRKHEYTQPTPIQAQSIPVALSGRDLIGIAKTGSGKTAAFVWPMLV 315

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  LIL PTREL+ Q+    +K+GK YN+ V    GG     Q+K L
Sbjct: 316 HIMDQKELDSGDGPIGLILAPTRELSQQIYHEAKKFGKVYNIRVCCCYGGGSKWEQSKAL 375

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA++++ TPGRI+D        ++ +  LV+DEADRM DMGF P +++I + V   RQ
Sbjct: 376 ESGAEIVVATPGRIIDLVKMKATNLSRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQ 435

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    ++K++ + L +P RI           +    +  Y   + K   L Q +
Sbjct: 436 TLLFSATFKKRIEKLARDALTDPIRIVQGDVGEANTDVTQHVIVFYKNPTGKWTWLNQNI 495

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               +  + +IF  +K N   L ++L+ + + V  +HG++DQ  R K++++FK+ T+ ++
Sbjct: 496 VEYLSSGSLLIFVTKKLNAEELANNLKLKEYEVLLLHGDMDQVERNKVITSFKKKTVSIL 555

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TLV ++D +    
Sbjct: 556 VATDVAARGLDIPHIRTVINYDVARDIDTHTHRIGRTGRAGEKGTAYTLVTEKDKEFAGH 615

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     +   L  L
Sbjct: 616 LVRNLEGANQEVPKSLMDL 634


>gi|157118999|ref|XP_001659287.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108875497|gb|EAT39722.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 439

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 112/375 (29%), Positives = 185/375 (49%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L  +++  + + G+ KP+PIQ   IP+ L   D+   A+ GTGKT ++ +P+L 
Sbjct: 50  EFEEFCLKRELLMGIFEKGWEKPSPIQEAAIPIALVGKDILARAKNGTGKTGAYSIPVLE 109

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LI+ PTRELA Q +    +  K+ ++ V +  GG   +    ++ +
Sbjct: 110 QIDPT---KDYIQALIIVPTRELALQTSQICIELAKHMHIRVMVTTGGTNLKDDIMRIYQ 166

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGRILD  ++    M N  +LV+DEAD++L   F   + ++   +P  RQ L
Sbjct: 167 KVQVIIATPGRILDLMDKEVANMANCRMLVLDEADKLLSQDFKGMLDHVIMKLPKERQIL 226

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F++   R           T++           ++       L S
Sbjct: 227 LFSATFPLSVKN----FMEKHLREPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFS 282

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+    IH  + Q  R ++  +F+ G  + +V 
Sbjct: 283 KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMQQAHRNRVFHDFRSGLCRNLVC 342

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  IE
Sbjct: 343 SDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIE 402

Query: 362 KLIEKKVDWLNGDLS 376
           K +  ++  +   + 
Sbjct: 403 KELGTEIKPIPKVID 417


>gi|146302300|ref|YP_001196891.1| DEAD/DEAH box helicase domain-containing protein [Flavobacterium
           johnsoniae UW101]
 gi|146156718|gb|ABQ07572.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae
           UW101]
          Length = 415

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 159/416 (38%), Positives = 236/416 (56%), Gaps = 6/416 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  +  AV + GY+ PTPIQ K+IP+VL   D+ G AQTGTGKTA+F +P++
Sbjct: 1   MLFEDLSLSKSIQKAVFEEGYLNPTPIQEKSIPIVLAGRDLIGCAQTGTGKTAAFAIPII 60

Query: 61  TILEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L +      + +  R LI+ PTRELA Q+  +F+ Y K  NLT   + GG+    Q  
Sbjct: 61  HQLHRIVGSSKKAKQIRALIVTPTRELAVQIGQSFDTYSKYTNLTQLTIFGGVSQNPQVD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G DVL+ TPGR+LD   +G L +N++  LV+DEAD+MLDMGFI  ++ I  L P  
Sbjct: 121 ALKNGVDVLVATPGRLLDLHKQGFLDLNHLHTLVLDEADQMLDMGFINDVKKIVKLTPKN 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM   +++++E FLQ+P+++EV+  SSTAE +E           +       
Sbjct: 181 RQTLLFSATMPLAIRELAEMFLQDPEKVEVSPVSSTAENVEQRVYFVDKTEKRNLLYRL- 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++ + N ++F   K    N+  +L K+     AIHG+  Q +R ++L  FK   + 
Sbjct: 240 --IKEENLSNVLVFSRTKHGADNVVKALRKKNIPAEAIHGDKSQNARQRVLDAFKNKEVG 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  + +V NFD+PN  E Y+HRIGRTGRAG  G A +   K++  + 
Sbjct: 298 VLVATDIAARGIDIEQLPYVINFDLPNIPETYVHRIGRTGRAGNGGIAISFCGKDEEPYW 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
             I+KLI+  V  +       +    +      N  R       + +   ++ K  
Sbjct: 358 KDIKKLIKVDVKIITDHPYPWHSGSPEAGEKPKNSNRSGGAHKSRKSSASKQNKKR 413


>gi|331011364|gb|EGH91420.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 442

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 144/374 (38%), Positives = 215/374 (57%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV ++  +Y ++  L+     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  I V+  +  A ++            K+ A L   
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIGVSPRNVAASSV---KQWVVTVDKKRKADLFIH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +      ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 238 LMKKHRWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVDWLN 372
           AIE L  + ++   
Sbjct: 358 AIEVLTRQTLERKE 371


>gi|224128550|ref|XP_002329031.1| predicted protein [Populus trichocarpa]
 gi|118482674|gb|ABK93256.1| unknown [Populus trichocarpa]
 gi|222839702|gb|EEE78025.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 195/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  TFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G   +   + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 101 QLDYG---LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLRQDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V  +D + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTSDDDRMLFDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     V+ L  +++ L
Sbjct: 396 KFYNVVVEELPSNVADL 412


>gi|188532351|ref|YP_001906148.1| ATP-dependent RNA helicase RhlB [Erwinia tasmaniensis Et1/99]
 gi|226739538|sp|B2VG58|RHLB_ERWT9 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|188027393|emb|CAO95240.1| ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99]
          Length = 430

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 139/422 (32%), Positives = 212/422 (50%), Gaps = 9/422 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P+V+ A+   G+   TPIQ   +P  L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L         +   PR LIL PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  HLLSHPAPEGRQTNQPRALILAPTRELAVQIHADAEPLAQITGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G DVLI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLENGVDVLIGTTGRLIDYAKQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F        V       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSFRVRELAFENMNNAEYVEVEPDQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G + 
Sbjct: 249 TLIEEEWPDRTIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG +G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKV--DWLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE+ I   +     N D  ++ L PP         N  R+     ++S+      +  
Sbjct: 369 PAIEEYIGHSITVSRYNSDALMTDLPPPKRLTRNRSGNGPRRGGNNNRRSSASRSPNRKR 428

Query: 414 SS 415
           S 
Sbjct: 429 SG 430


>gi|330960515|gb|EGH60775.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 559

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 150/386 (38%), Positives = 235/386 (60%), Gaps = 9/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L +
Sbjct: 8   FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHL 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++  +     P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPSKRE---PQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++PK +++ T + T   IE   +  +A       L       
Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL---E 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKI 385
           ++  +KV    L    + L+  ++K+
Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKL 387


>gi|330896875|gb|EGH28465.1| helicase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 445

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 138/437 (31%), Positives = 213/437 (48%), Gaps = 15/437 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 2   FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L          R +IL PTRELA Q     E++ +   +   L+ GG  F+ Q   L + 
Sbjct: 62  LIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI TPGR+L+  N G L + ++E+LV+DEADRMLDMGF   ++ +        QT+L
Sbjct: 122 PDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGGCAGREQTML 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT T                  +   S +            A ++     +   L + 
Sbjct: 182 FSAT-TGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLAN 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T +  IIF N K     L   L    +    +HG+ DQ+ R   +   K+G  ++MVA+
Sbjct: 241 ETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVAT 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  +  V NFD+P   ++Y+HR+GRTGRAG  G A +L+   D   + ++E+
Sbjct: 301 DVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVER 360

Query: 363 LIEKK-----VDWLNGDLSSLNPPLEKIDI---------AQHNHARKNNPIPQKSTGFDR 408
            +++      +  + G                       A+ +  +     P K    +R
Sbjct: 361 YLKQSFERRVIKEVKGTYGGPKKVKASGKAVGVKKKKTDAKGDKKKVAAKGPTKRKTVNR 420

Query: 409 RKKNYSSQKSHIPLKES 425
            K +  SQ    PLK+ 
Sbjct: 421 PKSDLVSQDGMAPLKKR 437


>gi|218897409|ref|YP_002445820.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|228901054|ref|ZP_04065263.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 4222]
 gi|228965436|ref|ZP_04126523.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|218541264|gb|ACK93658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|228794267|gb|EEM41784.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228858570|gb|EEN03021.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 4222]
          Length = 450

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 141/410 (34%), Positives = 227/410 (55%), Gaps = 11/410 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            +    + V+    LI+ PTRELA Q+    +K          L I  G     Q +KL+
Sbjct: 66  KINPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TI            +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTI---EQRVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           EK +   +     +     P ++++D       +       ++   D R+
Sbjct: 360 EKTLGAPIQREIIE----QPKIKRVDENGKPVPKPAPKKSGQNRQRDSRE 405


>gi|3775993|emb|CAA09199.1| RNA helicase [Arabidopsis thaliana]
          Length = 505

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 116/375 (30%), Positives = 199/375 (53%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P+L 
Sbjct: 132 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLE 191

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++      + + +I+ PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 192 KIDQDN---NVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQ 248

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P ++++ S +P +RQ L
Sbjct: 249 PVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQIL 308

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++   + FL NP  I          T++           ++       L S
Sbjct: 309 MFSATFPVTVKDFKDRFLTNPYVI----NLMDELTLKGITQFYAFVEERQKIHCLNTLFS 364

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 365 KLQINQSIIFCNSVNRVELLAKKITELGYSCSYIHAKMLQDHRNRVFHDFRNGACRNLVC 424

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 425 TDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 484

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 485 QELGTEIKQIPPHID 499


>gi|295107314|emb|CBL04857.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 445

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 148/414 (35%), Positives = 231/414 (55%), Gaps = 9/414 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGLS   + AV   GY  PTP+Q + IPL L+  DV   A TGTGKT +F LP++ 
Sbjct: 36  TFQDLGLSETTLAAVAQMGYNAPTPVQEQAIPLALEGRDVVAAAVTGTGKTTAFALPVIE 95

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++ + +   PR L++ PTRELA Q+     +  K   L V  ++GG+P++ Q  KL R
Sbjct: 96  RIDRAK-KPGSPRALVVSPTRELALQIDAACTQLAKGSGLRVVTVVGGVPYKGQLSKLSR 154

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+L+ TPGR+ D   RG + + ++EILV+DEADRMLDMGF P ++ I +  P +RQTL
Sbjct: 155 GVDILVATPGRLHDLMERGDVKLRDVEILVLDEADRMLDMGFWPTMKKIVAATPSSRQTL 214

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ +     L++P  +     +   ET +          S + A L +LL +
Sbjct: 215 LFSATLDRKVMQSVSAILRDPAFV---EVAHKGETSDTIEQFIVPVGSMQKASLLRLLLA 271

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   K  I+F + K         L++ GF   +IH +  Q  R + L+ F +G + ++VA
Sbjct: 272 ERGSKRVIVFTDTKTRAEICTGQLKRAGFRAESIHSDKTQAQRKRALAAFSKGDVDVLVA 331

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+PD+ +V N+++P   ++Y+HRIGRTGRAG  G + + V+ E    +  IE
Sbjct: 332 TDVLARGIDVPDIAYVVNYELPENPDDYVHRIGRTGRAGEAGCSISFVSPEAKAQLLDIE 391

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS-----TGFDRRK 410
           KL+  K+  L  +          +     +   + +    +S     TGF RR+
Sbjct: 392 KLLGSKIPTLAVEGYDATEAERALANRFVSKTTRGSAAFSRSLRRNPTGFGRRR 445


>gi|260596009|ref|YP_003208580.1| ATP-dependent RNA helicase RhlB [Cronobacter turicensis z3032]
 gi|260215186|emb|CBA27017.1| ATP-dependent RNA helicase rhlB [Cronobacter turicensis z3032]
          Length = 421

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 143/413 (34%), Positives = 208/413 (50%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P VV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPVVVQALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   K   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAAEDRQVNQPRALIMAPTRELAVQIHSDAEPLAKATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYTKQNHVNLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 AQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIQEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G I 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDID 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    LS L PP         N  R++  P  ++ TG
Sbjct: 369 PAIETYIGHSIPVSKYNPDALLSELPPPKRLSRPRTGNGPRRSGAPRNRRRTG 421


>gi|288942044|ref|YP_003444284.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288897416|gb|ADC63252.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
           180]
          Length = 454

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 131/462 (28%), Positives = 222/462 (48%), Gaps = 14/462 (3%)

Query: 1   MD--FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           M+  F++  L   ++  + + GY  PTP+Q + IPL +   D+   A TG+GKTA+F+LP
Sbjct: 1   MNTHFSEFLLPDALMRGLANEGYTTPTPVQAQVIPLAMDGVDLLVSAATGSGKTAAFLLP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           ++             R LIL PTRELA Q+  +F + G    LT  ++ GG     Q   
Sbjct: 61  IMQRFIDVPRHDGSTRALILVPTRELARQIHIHFMRLGSYTRLTSGVITGGESKAHQIAT 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  ++L+ TPGR+L+    G+  + ++E LV+DEADRMLDMGF   +  I       R
Sbjct: 121 LRKNPEILVATPGRLLEFLETGQANLRDLEFLVLDEADRMLDMGFADDVLAIIRYSRPER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+LLFSAT+ ++                V+      +  +       +   +        
Sbjct: 181 QSLLFSATL-EQRGLSQITERLLRDPQRVDVDPVRQQHPDIAHCMLLSDGLEHKQQQLLW 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   +T +  +IF N ++  V L + L+ Q   V  +HG +DQR R +++     G +  
Sbjct: 240 LLRHETYEKALIFTNTREGAVALGNFLQGQQQRVAVLHGELDQRERNRVMGLLHSGRVNT 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+DLAARG+D+P V  VFNFD+P R ++Y+HR GRTGRAG  G A +LV   +   ++
Sbjct: 300 LIATDLAARGIDVPGVQRVFNFDLPRRGDDYLHRTGRTGRAGEAGVAISLVGPPEWNRME 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           +I + +    +            +E +  +     ++N P    +T   R+    + +K 
Sbjct: 360 SIARYLNLTFE---------PREIEGLKASFKGPTKRNKPSKPAATSGKRKSTAAAEEKP 410

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
               +  ++ +  ++ +  +        G+ P     +   K
Sbjct: 411 RKKERLRDRKNIGKRRVPTSAKAQEA--GHAPLTRRAREHAK 450


>gi|161505568|ref|YP_001572680.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189040035|sp|A9MJ29|RHLB_SALAR RecName: Full=ATP-dependent RNA helicase rhlB
 gi|160866915|gb|ABX23538.1| hypothetical protein SARI_03738 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 421

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 138/413 (33%), Positives = 208/413 (50%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P+VV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQVTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 AQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARK-NNPIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIESYIGHSIPVSKYNPEALMTDLPKPLRLTRSRPGNGPRRAGAPRNRRRSG 421


>gi|189485761|ref|YP_001956702.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287720|dbj|BAG14241.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 543

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 142/403 (35%), Positives = 229/403 (56%), Gaps = 8/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L LS +++ AV D G+ + TPIQ  +IP ++   D+ G +QTGTGKTA+F +P+L
Sbjct: 4   LKFNELNLSNEILKAVEDLGFEEATPIQSLSIPKMMTGIDIIGQSQTGTGKTAAFGIPVL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
                    V+     IL PTRELA QVA+  + + K       + + G  P + Q   L
Sbjct: 64  EKTNAKNKAVQSV---ILCPTRELAIQVAEELKLFSKYKKGINIVPVYGGQPIQRQMIAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GA ++I TPGR++DH  R  L ++   I+++DEAD MLDMGF   I+ I   +P  RQ
Sbjct: 121 SKGAQIVIGTPGRVIDHLERRTLKLDTASIVILDEADEMLDMGFRDDIELILKSIPEGRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+ FSATM  E   +++ +  +P+ I+V +   T  +IE      +     +        
Sbjct: 181 TVFFSATMPKEFLSLTKKYQHSPETIKVVSEKLTVPSIEQ---YYFDIKEHQKLEALTRC 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  ++FCN KK V  +  SL+ +G+   AIHG+++Q  R +++S F+ G+I+L+
Sbjct: 238 LDMYDPKLSLVFCNTKKRVDEVTSSLQARGYYADAIHGDMNQSQRNRVMSKFRNGSIELL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+  +  VFNFDVP   E+Y+HRIGRTGRAG+ GKA++ V+ +DI  +  
Sbjct: 298 IATDVAARGIDVDGIDMVFNFDVPKDDEDYVHRIGRTGRAGKAGKAYSFVSGKDIYKLRD 357

Query: 360 IEKLIEKKVDWLN-GDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           I++  +  +  +    L+ +    E I + +     K   + +
Sbjct: 358 IQRYTKANIKRMQVPSLADVENTKETIMLDKVKEVLKEKDLEK 400


>gi|169844029|ref|XP_001828736.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
 gi|116510107|gb|EAU93002.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
          Length = 754

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 152/472 (32%), Positives = 243/472 (51%), Gaps = 32/472 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++ A+   G+ KPTPIQ  TIP+ L   D+ G A TG+GKTA+F++PML 
Sbjct: 175 TFLQMNLSRPILKAISSLGFTKPTPIQASTIPVALLGKDIVGNAVTGSGKTAAFMIPMLE 234

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                +   R    R LIL PTRELA Q  +  ++ G + ++   LL+GG+  +AQ   L
Sbjct: 235 RLLYREKGKRAAATRCLILLPTRELAVQCYEVGKRLGAHTDIQFCLLVGGLSLKAQEAAL 294

Query: 120 ERGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +  DV++ TPGR++DH         ++++ILV+DEADRML  GF   +  I    P +R
Sbjct: 295 RQRPDVVLATPGRLIDHVRNSVGFNLDSLDILVLDEADRMLSEGFADELTEIIKACPKSR 354

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATMTD + ++ +  L  P R+ V+   STA  +   FV    +  +   L+   
Sbjct: 355 QTMLFSATMTDSVDELIKMSLNKPVRLFVDPKRSTARGLIQEFVRIRKESDRPAMLVALC 414

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            Q+       IIF   KK    +       G     +HG++ Q  R++ L +F+EG++  
Sbjct: 415 KQTYK--HKVIIFVRSKKLAHQMRIVFSLLGMKCAELHGDLSQEQRLQALQSFREGSVDY 472

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+DLA+RGLDI  V  V N+D+P +   Y+HR+GRT RAGR GK+ TLV + D K + 
Sbjct: 473 LMATDLASRGLDIKGVETVVNYDMPGQMAQYLHRVGRTARAGRKGKSVTLVGEADRKLLK 532

Query: 359 -AIEKLIEK------------------KVDWLNGDLSSL---NPPLEKIDIAQHNHARKN 396
            AI+    +                  K++ L G+++ +       +++  A+    +  
Sbjct: 533 AAIKHAAGEDQVRQRVLDTTVVQKYADKLEGLKGEIAEVMREEKEEKQLRQAEMELTKGE 592

Query: 397 NPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
           N +  +   F R  + +         KE EK  ++ + + E  + + G +  
Sbjct: 593 NMMKHQDEIFSRPARTW-----FQTNKEKEKAKEISKQLHEGKSAAKGKQSK 639


>gi|329905919|ref|ZP_08274297.1| ATP-dependent RNA helicase RhlE [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547410|gb|EGF32236.1| ATP-dependent RNA helicase RhlE [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 446

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 167/395 (42%), Positives = 232/395 (58%), Gaps = 11/395 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +V AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFAQLGLSADIVRAVTEHGYTIPTPIQAQAIPAVLLGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 61  TI------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                           R  R LIL PTRELAAQV ++   YGK   LT  ++ GG+    
Sbjct: 61  HRLSTSTSAPTTNTATRPIRALILAPTRELAAQVEESVRTYGKYLKLTSTVIFGGVGINP 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q K L+ G D+L+ TPGR+LDH  +G + ++ +EIL++DEADRMLDMGFI  I+ + +++
Sbjct: 121 QIKMLKHGVDILVATPGRLLDHMGQGTVNLSQVEILILDEADRMLDMGFIKDIKKVLAVL 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ LLFSAT ++E++ +++  L  PK IEV   +ST E I                 
Sbjct: 181 PKKRQNLLFSATFSEEIKTLADGLLNAPKMIEVARRNSTVEIIAQKIYPVDRDKKHPL-- 238

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
               L   +     ++F   K     L   LEK G S  AIHGN  Q +R K L+ FK+G
Sbjct: 239 -LAHLIKTNNWPQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTKALAEFKDG 297

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            +Q++VA+D+AARG+DI  + HV N+D+PN  E+Y+HRIGRTGRAG  G+A +LV  ++ 
Sbjct: 298 KLQVLVATDIAARGIDIDQLPHVVNYDLPNIPEDYVHRIGRTGRAGATGEAVSLVCVDEH 357

Query: 355 KHIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDI 387
           + +  IEKLI++++  + + G     N   + I +
Sbjct: 358 EMLRDIEKLIKRELPKEVVPGFEPDPNARAQPIQL 392


>gi|331018940|gb|EGH98996.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 442

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 146/374 (39%), Positives = 218/374 (58%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV ++  +Y +N  L+     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAENLPLSTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD + +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLYRQKAIRFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A ++            K+ A L   
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSV---KQWVVTVDKKRKADLFIH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +      ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 238 LMKKHRWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG+ G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGQTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVDWLN 372
           AIE L  + ++   
Sbjct: 358 AIEVLTRQTLERKE 371


>gi|319899115|ref|YP_004159208.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
 gi|319403079|emb|CBI76634.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
          Length = 416

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 152/415 (36%), Positives = 234/415 (56%), Gaps = 14/415 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  ++  + +AG  KP  IQ + IP++L+ HDV GIAQTG+GKT +F LP+L  
Sbjct: 9   FAELGLSSLLIKNLFNAGMSKPKLIQAQAIPVMLKGHDVLGIAQTGSGKTLAFSLPILNR 68

Query: 63  LEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     +         IL PTRELA Q+ +      K  +L+  L++GG+    Q K++ 
Sbjct: 69  ILTLGDKRHPKTARALILVPTRELAVQIEEAISAVAKGTHLSTCLILGGMSRLIQIKRMA 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+LI TPGR++D      + ++     V+DEADRMLDMGFI  ++ I + +    QT
Sbjct: 129 KGVDILIATPGRLMDLIRSKYIDLSQSRFFVLDEADRMLDMGFISDVRQIANFLHKKCQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  +++N L+ P +IEV    +TA  I            K          
Sbjct: 189 ALFSATMPKEVNVLADNLLKKPIKIEVVPQGTTAVEITQVLYCVSTSEKKSVLSKLL--- 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   + + I+F   K    ++  SL+K G+SV  IHGN  Q +R   L +F+EG ++++V
Sbjct: 246 TNPALASVIVFIRTKHGADSVARSLKKTGYSVATIHGNKSQNARQCALKDFREGLVRILV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+ ARG+DIP + HV N+D+P+ AE+Y+HRIGRTGR G  G A TL  ++ +   + A
Sbjct: 306 ATDIVARGIDIPGISHVINYDLPDNAESYVHRIGRTGRNGASGDAITLFDEKVERARLSA 365

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP--QKSTGFDRRK 410
           IE+LI  K+    +    ++L   L +       H R++N     ++S G+ + K
Sbjct: 366 IERLIRIKLTRKEIPPQFAALPEKLPE----PKTHKREDNKERHLKRSKGWKKFK 416


>gi|242278297|ref|YP_002990426.1| DEAD/DEAH box helicase [Desulfovibrio salexigens DSM 2638]
 gi|242121191|gb|ACS78887.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
          Length = 521

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 133/372 (35%), Positives = 210/372 (56%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
            F +LGLS  ++ A+   G+  PTPIQ KTIP++L    D+ G AQTGTGKTA+F LP++
Sbjct: 3   KFRNLGLSDAIIEALEKKGFTAPTPIQEKTIPMLLSGEKDIVGQAQTGTGKTAAFGLPII 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + +G   V+     +L PTRELA QVAD    +  +  + VA + GG P   Q K L+
Sbjct: 63  ENVREGAGHVQAI---VLTPTRELAMQVADEIISFRGSRKVFVATVYGGQPMLPQLKALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGAD+++ TPGR+LDH  R  L ++ I   V+DEAD M +MGF+  +  I       R+T
Sbjct: 120 RGADIVVGTPGRVLDHIRRKTLDLSQINNFVLDEADEMCNMGFLEEVSEIMENAGEDRRT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+  +++ F+ +   + V       +      +  +    +        + 
Sbjct: 180 LLFSATMPREVMNIAKKFMGDYDVVSVKREK---DEAPLTELIFHEVNERDRFEALCRVV 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  G++FC  + +   +  +L ++G+    IHG++ Q  R  IL  F++   +++V
Sbjct: 237 DAQPEFYGLVFCRTRADADRVAGTLAERGYPAEPIHGDLSQARREDILMRFRKRRCKILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+PD+ HV NF +P   ++++HR+GRTGRAG+ G A TL+   +   +  I
Sbjct: 297 ATDVAARGIDVPDLSHVVNFALPQDPQSFVHRVGRTGRAGKKGVAVTLITPREFGKLRYI 356

Query: 361 EKLIEKKVDWLN 372
            K+ + +VD   
Sbjct: 357 TKITKLRVDKKP 368


>gi|73662111|ref|YP_300892.1| ATP-dependent RNA helicase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123643052|sp|Q49Z29|Y802_STAS1 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SSP0802
 gi|72494626|dbj|BAE17947.1| putative ATP-dependent RNA helicase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 506

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 129/383 (33%), Positives = 210/383 (54%), Gaps = 13/383 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S K+   +   G+ + TPIQ ++IPL L+  DV G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDKMAETLQSMGFNEATPIQKESIPLALEGKDVLGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +          ++LIL PTRELA QVA++ + + K  N+ V  + GG+P + Q K L++
Sbjct: 63  KVADQ----EGVQSLILAPTRELAMQVAESLKAFAKGQNIQVVTVFGGMPIDRQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L  N+I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMKFIMDKIPAEQRQT 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +           I     +  ++     +     +  K           
Sbjct: 179 MLFSATMPKAIQTLVQQFMKSPVIVKTMNNEMSDPQIEEYYTIVKELEKFDTFTS--FLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   + ++VA
Sbjct: 237 VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQLDILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 297 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGVAITFVNPIEMDYIRQIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
           +  +++       +++L PP  K
Sbjct: 357 QANKRQ-------MTALRPPHRK 372


>gi|120597338|ref|YP_961912.1| ATP-dependent RNA helicase RhlB [Shewanella sp. W3-18-1]
 gi|146294517|ref|YP_001184941.1| ATP-dependent RNA helicase RhlB [Shewanella putrefaciens CN-32]
 gi|189040045|sp|A4YB09|RHLB_SHEPC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040084|sp|A1RFB3|RHLB_SHESW RecName: Full=ATP-dependent RNA helicase rhlB
 gi|120557431|gb|ABM23358.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145566207|gb|ABP77142.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
 gi|319427882|gb|ADV55956.1| ATP-dependent RNA helicase, RhlB [Shewanella putrefaciens 200]
          Length = 439

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 140/430 (32%), Positives = 224/430 (52%), Gaps = 13/430 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L P+V  A+ + G+   TPIQ  ++P++LQ  D+ G AQTGTGKT +F++    
Sbjct: 10  KFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      ++  PR +I+ PTRELA Q+A +     K+  L V ++ GG  ++ Q K
Sbjct: 70  HLLSTPIPEGRQINQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+LI T GRI+D+  +G + +  I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLDQGVDILIGTTGRIIDYVRQGIISLTAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T  ++     +      ++V+  +   +T ++     +    +    L  
Sbjct: 190 NQRLNMLFSATLSMKVQELAYDHMNDPVKVD-IAPDEKTSKNIKEEVFYPSQEDKMRLLL 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +D  +  I+F N K +  NL   LE  G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLE---KIDIAQHN-HARKNNPIPQKSTGFDRR 409
            AIE  I   +   N D    L  +  P++   K      N   R     PQ +     R
Sbjct: 369 PAIESYINHSIPVSNYDSSALLEDIPAPVKIPRKHPAGTRNLRERAGAGRPQGAHRSGGR 428

Query: 410 KKNYSSQKSH 419
              +   + H
Sbjct: 429 PPRHDRTRRH 438


>gi|302188635|ref|ZP_07265308.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. syringae
           642]
          Length = 445

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 139/437 (31%), Positives = 213/437 (48%), Gaps = 15/437 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 2   FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L          R +IL PTRELA Q     E++ +   +   L+ GG  F+ Q   L + 
Sbjct: 62  LIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI TPGR+L+  N G L + ++E+LV+DEADRMLDMGF   ++ +        QT+L
Sbjct: 122 PDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTML 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT T                  +   S +            A ++     +   L + 
Sbjct: 182 FSAT-TGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLAN 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T K  IIF N K     L   L    +    +HG+ DQ+ R   +   K+G  ++MVA+
Sbjct: 241 ETYKKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVAT 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  +  V NFD+P   ++Y+HR+GRTGRAG  G A +L+   D   + ++E+
Sbjct: 301 DVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVER 360

Query: 363 LIEKK-----VDWLNGDLSSLNPPLEKIDI---------AQHNHARKNNPIPQKSTGFDR 408
            +++      +  + G                       A+ +  +     P K    +R
Sbjct: 361 YLKQSFERRVIKEVKGTYGGPKKVKASGKAVGVKKKKTDAKGDKKKVAAKGPTKRKTVNR 420

Query: 409 RKKNYSSQKSHIPLKES 425
            K +  SQ    PLK+ 
Sbjct: 421 PKSDLVSQDGMAPLKKR 437


>gi|297691246|ref|XP_002823001.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Pongo
           abelii]
          Length = 455

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 136/433 (31%), Positives = 219/433 (50%), Gaps = 7/433 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++  +  A    G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 25  TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++G            +
Sbjct: 85  ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      I    N     +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++          SK        + 
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ---YYIFIPSKFKDTYLVYIL 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI KK+         +    E++  AQ     +     +K         +    +  I
Sbjct: 379 EHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSREDAGDNDDTEGAI 438

Query: 421 PLKESEKISKLQQ 433
            ++      K+++
Sbjct: 439 GVRNKVTGGKMKK 451


>gi|195621064|gb|ACG32362.1| ATP-dependent RNA helicase DDX47 [Zea mays]
          Length = 455

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 134/439 (30%), Positives = 228/439 (51%), Gaps = 11/439 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+  ++V A    G+ +PT IQ + IP  LQ  D+  +AQTG+GKT +F LP+L 
Sbjct: 25  TFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTGAFALPILQ 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   R   +     +L PTRELA Q+A+ FE  G    L  ++L+GG+    Q   + +
Sbjct: 85  ELLSNRQAEQSFFACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSIGK 144

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +          +  I+ LV+DEAD++L++ F   + +I S +P  R+T
Sbjct: 145 RPHIVVGTPGRLLDHLTETKGFSLKKIKYLVLDEADKLLNVEFEKSLDDILSEMPKDRRT 204

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+    L+NP ++EV++  ST ++++  F    A       L     +
Sbjct: 205 FLFSATMTKKVNKLQRACLRNPAKVEVSSKYSTVDSLKQEFYFVPADDKDCYLLHVLNER 264

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  +    IF    ++   L   L   G    +I G + Q  R+  L+ FK     +++
Sbjct: 265 LESMIM---IFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKAKDCNILI 321

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A+RGLDI  V  V N+D+P  +++Y+HR+GRT RAGR G A +LV + + +    I
Sbjct: 322 CTDVASRGLDIQGVDMVINYDIPINSKDYVHRVGRTARAGRSGYAVSLVNQYEAQWFVLI 381

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+L+ KK+D    D   +      I     + A++      K +G  ++++N       +
Sbjct: 382 EQLLGKKIDQCKVDRDEVLILKGPI-----SDAKRIALTKLKDSGGHKKRRNVGDDDEEV 436

Query: 421 PLKESEKISKLQQDIQEND 439
               S   S+  + ++ ++
Sbjct: 437 EDHSSH--SRRPKSLKRSN 453


>gi|260776311|ref|ZP_05885206.1| ATP-dependent RNA helicase RhlE [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607534|gb|EEX33799.1| ATP-dependent RNA helicase RhlE [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 483

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 171/454 (37%), Positives = 254/454 (55%), Gaps = 12/454 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ D GY KP+PIQ + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTALGLSAPLLKAIDDQGYDKPSPIQEQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L+ G   +    R L+L PTRELAAQV +N  KY +   LT  ++ GG+    Q  KL
Sbjct: 61  ERLDNGTRVKGNHVRALVLTPTRELAAQVQENVFKYSRYQRLTSNVVFGGVKINPQMTKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DVL+ TPGR+LD + +  +  + +E+LV+DEADRMLDMGFI  I+ I +L+P  RQ
Sbjct: 121 RKGTDVLVATPGRLLDLYQQNAINFSQLEVLVLDEADRMLDMGFIRDIRKILALLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + +P  + VN       T      + Y    +K A +   L
Sbjct: 181 NLLFSATFSAEIRELAKGLVNDPVEVSVNP---ENSTAVTIEQSIYPADKRKKAPMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  ++F   K     L H L  QG +   IHGN  Q +R K L++FK G ++++
Sbjct: 238 IKDGDWRQVLVFSRTKHGANRLSHYLNDQGITAAPIHGNKSQGARTKALADFKSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P+ AE+Y+HRIGRTGRAG  GKA +LV   +   +  
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPHVAEDYVHRIGRTGRAGEVGKAISLVEAAEASELFG 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           IE+LI++ +  L  +L    P    P  K+D  +    +K     +        K++  +
Sbjct: 358 IERLIQQVLPRL--ELEGYKPVNVLPESKLDT-RPIKPKKPKKPKKPKVDHADGKRSGDN 414

Query: 416 QKSHIPL-KESEKISKLQQDIQENDADSLGFRGN 448
            + H P  K        + +   + +++ G R +
Sbjct: 415 ARGHKPAGKNKRHFGHNKPNGDGSKSNNGGKRKD 448


>gi|238750653|ref|ZP_04612152.1| ATP-dependent RNA helicase rhlB [Yersinia rohdei ATCC 43380]
 gi|238711043|gb|EEQ03262.1| ATP-dependent RNA helicase rhlB [Yersinia rohdei ATCC 43380]
          Length = 428

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 135/418 (32%), Positives = 210/418 (50%), Gaps = 9/418 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P V+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPLVIEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                  +   +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQITGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 EKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQ-KTGHRIQEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL +F +G + 
Sbjct: 249 TLIEEEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            AIE      +     +    L+ L  P   +     N  R+N+   +     + RK+
Sbjct: 369 PAIETYTGHSIPVSKYNSDALLTDLPAPKRLVRTRTGNGPRRNSAPRRSGAPRNNRKR 426


>gi|224153793|ref|XP_002337398.1| predicted protein [Populus trichocarpa]
 gi|222838972|gb|EEE77323.1| predicted protein [Populus trichocarpa]
          Length = 390

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 195/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 18  TFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 77

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G   +   + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 78  QLDYG---LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 135 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVG 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 195 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL--YE 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 253 TLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V  +D + +  I+
Sbjct: 313 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTSDDDRMLFDIQ 372

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     V+ L  +++ L
Sbjct: 373 KFYNVVVEELPSNVADL 389


>gi|260831524|ref|XP_002610709.1| hypothetical protein BRAFLDRAFT_202435 [Branchiostoma floridae]
 gi|229296076|gb|EEN66719.1| hypothetical protein BRAFLDRAFT_202435 [Branchiostoma floridae]
          Length = 427

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 114/376 (30%), Positives = 191/376 (50%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   DV   A+ GTGKT ++++P++ 
Sbjct: 37  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALLARDVLARAKNGTGKTGAYIIPVIE 96

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +E         + L+L PTRELA Q +      GK+  +   +  GG        +L  
Sbjct: 97  RVEL---DKNHIQALVLVPTRELALQTSSIATALGKHLGIRCMVTTGGTSLRDDIMRLYD 153

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD   +G   M++ ++LV+DE D++L   F   + ++   +P  RQ L
Sbjct: 154 TVHIVIATPGRILDLMKKGVAKMDHCQMLVLDEGDKLLSQDFKGMLDSVIGHLPRERQIL 213

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F++               T++           ++       L S
Sbjct: 214 LFSATFPLSVKD----FMKRHLNKPYEINLMEELTLKGITQYYAFVQERQKVHCLNTLFS 269

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+S   IH  ++Q+ R ++  +F+ G  + +V 
Sbjct: 270 KLQINQSIIFCNSTQRVELLAKKITELGYSCYYIHAKMNQQHRNRVFHDFRNGACRNLVC 329

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  IE
Sbjct: 330 SDLFTRGIDIQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGVAINLITFDDRYNLHKIE 389

Query: 362 KLIEKKVDWLNGDLSS 377
           + ++ ++  + GD+  
Sbjct: 390 RELDTEIKPIPGDIDK 405


>gi|91080647|ref|XP_974536.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase
           [Tribolium castaneum]
 gi|270005826|gb|EFA02274.1| hypothetical protein TcasGA2_TC007938 [Tribolium castaneum]
          Length = 440

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 111/375 (29%), Positives = 188/375 (50%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L  +++  + + G+ KP+PIQ  +IP+ L   D+   A+ GTGKT ++ +P+L 
Sbjct: 53  EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDILARAKNGTGKTGAYSIPVLE 112

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +    + LI+ PTRELA Q +    +  K+ ++ V +  GG        ++ +
Sbjct: 113 QIDP---KKDCIQALIIVPTRELALQTSQICIELAKHLDVRVMVTTGGTNLRDDIMRIYQ 169

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGRILD   +G  +M+  +ILV+DEAD++L   F   +  +   +P  RQ L
Sbjct: 170 KVQVIIATPGRILDLMEKGVAVMDQCKILVLDEADKLLSQDFKGMLDTVIKNLPQERQIL 229

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++    F++   R           T++           ++       L S
Sbjct: 230 LFSATFPLTVEQ----FMRKHLRDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFS 285

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+    IH  + Q  R ++  +F+ G  + +V 
Sbjct: 286 KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRAGLCRNLVC 345

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D   +  IE
Sbjct: 346 SDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYDDRFALHRIE 405

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 406 QELGTEIKPIPKVID 420


>gi|310790963|gb|EFQ26496.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 1112

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 137/500 (27%), Positives = 238/500 (47%), Gaps = 36/500 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  GL+ + +  + D G+ KPT IQ++ +P+++   DV G+A+TG+GKT +F+LPM  
Sbjct: 490 KWAQCGLTRRTLDVLADMGFDKPTSIQMQALPVIMSGRDVVGVAKTGSGKTLAFLLPMFR 549

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  LI+ PTRELA Q+  + + + K   L      GG P   Q  +L
Sbjct: 550 HIMDQPPLKDTDGPIGLIMTPTRELAVQIHRDCKPFLKAMGLRSVCAYGGAPIREQIAEL 609

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D           +  +   V+DEADRM DMGF P +  I + +  
Sbjct: 610 KRGAEIVVCTPGRMIDLLAANQGRVTNLRRVTYAVLDEADRMFDMGFEPQVMKIFANIRP 669

Query: 177 TRQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            RQT+LFSATM   +     +      +          ++  +   +    Q       L
Sbjct: 670 DRQTILFSATMPRIIDSLTKKVLKSPVEITVGGRSVVASDITQIVEIVPEDQKFYHLLGL 729

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L  +D     ++F  +++   +L   L  +G+   +IHG  DQ  R   +S+FK+G 
Sbjct: 730 LGELYDKDEDARSLVFVERQEKADDLLKELMTKGYPCMSIHGGKDQVDRDSTISDFKKGI 789

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + +++A+ +AARGLD+  +  V N+D P+ +E+Y+HR GRTGRAG  G A T + +E   
Sbjct: 790 VPILIATSVAARGLDVKQLKLVVNYDCPSHSEDYVHRCGRTGRAGNKGTAVTYITEEQES 849

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPP--------------------LEKIDIAQ------ 389
              A+ K +E+    +   L  +                       L+++D  +      
Sbjct: 850 CASAVAKALEQSGQPVPERLEEMRKAWKEKVKSGKAKDSSGFGGKGLDRLDAEREAARLR 909

Query: 390 ----HNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGF 445
               H    +++ + ++ T  D+ K + +  +S +    S   SK + D +  DA +   
Sbjct: 910 ERKTHKAEGEDDDVKEEKTEEDKVKSSVTDIQSKVSAIVSRNTSKHEGDAKGKDAPAATG 969

Query: 446 RGNMPAFMLPKNRGKLNDKL 465
           +   P  M+      +N++L
Sbjct: 970 KAGQPLDMVSAAIRNINERL 989


>gi|289665420|ref|ZP_06487001.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 460

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 160/437 (36%), Positives = 237/437 (54%), Gaps = 10/437 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PT IQ + IPLVL  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      V  PR     IL PTRELA QV D+   Y K   +  A++ GG+    Q  
Sbjct: 61  QHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+LI  PGR++DH  R  + ++ IE+L++DEADRMLDMGF+P I+ I + +P  
Sbjct: 121 ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180

Query: 178 RQTL-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +   LFSAT  + +++++  F++NP +I+V   ++ AE+I H          +   L  
Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               S+   +  ++F   K     L   LEK G    AIHGN  Q  RM+ LS+FK G +
Sbjct: 241 LAQDSR---EQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LVA+++ K 
Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  I +++ + V+    D+    P    I        R   P   ++      ++ +   
Sbjct: 358 LRQIVRMLGRDVEI--RDVPGYEPQT-PIRWGNSAPGRAEQPGGDRAPRKSHARRPHGDA 414

Query: 417 KSHIPLKESEKISKLQQ 433
                     K    Q+
Sbjct: 415 PRQAHAHAGPKKPGGQR 431


>gi|156935889|ref|YP_001439805.1| ATP-dependent RNA helicase RhlB [Cronobacter sakazakii ATCC
           BAA-894]
 gi|189040029|sp|A7MQI2|RHLB_ENTS8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|156534143|gb|ABU78969.1| hypothetical protein ESA_03777 [Cronobacter sakazakii ATCC BAA-894]
          Length = 421

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 139/413 (33%), Positives = 208/413 (50%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P VV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPVVVQALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   + + L  GG  ++ Q K
Sbjct: 70  YLLSHPAAENRQVNQPRALIMAPTRELAVQIHSDAEPLAEATGIKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYTKQNHVNLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 TERLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    LS L PP         N  R++  P  ++ TG
Sbjct: 369 PAIETYIGHSIPVSKYNPDALLSELPPPKRLSRPRTGNGPRRSGAPRNRRRTG 421


>gi|146092052|ref|XP_001470194.1| DEAD box RNA helicase [Leishmania infantum]
 gi|134084988|emb|CAM69387.1| putative DEAD box RNA helicase [Leishmania infantum JPCM5]
 gi|322500494|emb|CBZ35571.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 389

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 117/374 (31%), Positives = 189/374 (50%), Gaps = 6/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   GY KPT IQ + I   L+  DV   A +GTGKT++F + +L 
Sbjct: 18  TFEAMGLKEDLLKGMYSFGYKKPTAIQKRFIMPFLKGRDVIAQASSGTGKTSAFCVCLLQ 77

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             +      +    LIL PTRELA Q  D     G +  LT    IGG   E   ++LE 
Sbjct: 78  ACDPHTRETQA---LILSPTRELAVQTQDLCNNIGHHMGLTAYACIGGKSTEEDIRRLES 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L +N ++ LV+DEAD ML  GF   I +I  +VP  +  L
Sbjct: 135 GVHIVSGTPGRVFDMIRRKSLRVNGLKTLVLDEADEMLGKGFKAQIHDIYRMVPPLQIIL 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + +    D L+   +   +    +      +     ++          K    +   L  
Sbjct: 195 VSATLPADVLEMTEKFMTEPASILVKRDEITVDSVKQY---FVSVDEEKNKFDVLMELYD 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+ + ++FCN +K V  L   + ++ F+V A+HG++ Q  R +I+  F+ G  ++++ 
Sbjct: 252 SLTIAHAVVFCNTRKKVEQLAKKMTREKFAVTAMHGDMPQAERDEIMRQFRNGHSRVLIT 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V ++D+P   E YIHRIGRTGR GR G A T V  ++++ +  IE
Sbjct: 312 TDLWARGIDVERVSLVLSYDLPLAREQYIHRIGRTGRMGRTGLAITFVRHDELRLLRDIE 371

Query: 362 KLIEKKVDWLNGDL 375
           +    +++ L  ++
Sbjct: 372 QFYATQIEELPANI 385


>gi|46116580|ref|XP_384308.1| hypothetical protein FG04132.1 [Gibberella zeae PH-1]
 gi|91206540|sp|Q4IF76|DBP2_GIBZE RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 555

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 209/380 (55%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 135 TFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPSIV 194

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+ +  +K+G++  +    + GG+P   Q + L
Sbjct: 195 HINAQPLLAPGDGPIVLVLAPTRELAVQIQEEMKKFGRSSRIRNTCVYGGVPKGPQIRDL 254

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 255 SRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 314

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E++ ++ +FLQ+  ++ + +    A       V    +  K+  +++ + 
Sbjct: 315 TLMWSATWPKEVRALASDFLQDFIQVNIGSMELAANHRITQIVEVVTEMEKRDRMIKHME 374

Query: 240 QSQDTMKNGIIFCNQKKNV-VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +  +N I+     K V   +   L + G+   +IHG+  Q  R  +L  FK G   +
Sbjct: 375 KVMENKENKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPI 434

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+A+RG+D+ ++ HV N+D PN +E+YIHRIGRTGRAG  G A TL   ++ K   
Sbjct: 435 MVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAMGTAITLFTTDNQKQAR 494

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++++    ++  L  +
Sbjct: 495 DLVNVLQEAKQQIDPRLVEM 514


>gi|223043911|ref|ZP_03613952.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Staphylococcus capitis SK14]
 gi|314934151|ref|ZP_07841512.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           caprae C87]
 gi|222442626|gb|EEE48730.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Staphylococcus capitis SK14]
 gi|313653056|gb|EFS16817.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           caprae C87]
          Length = 511

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 145/457 (31%), Positives = 230/457 (50%), Gaps = 15/457 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S + V  +   G+ +PTPIQ  +IP  L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDRTVQTLESMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +  ++LIL PTRELA QVA+   ++ K  N+ V  + GG+P E Q K L+R
Sbjct: 63  KVVGQ----QGVQSLILAPTRELAMQVAEQLREFSKGQNVQVVTVFGGMPIERQIKALKR 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L  N I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPSDQRQT 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     +     +  K           
Sbjct: 179 MLFSATMPKAIQDLVQQFMKTPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFT--NFLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 237 VHQPDLAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 297 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
            +  ++++       +L PP  K  +       K       S   + R +  SS+     
Sbjct: 357 DVNGRRMN-------ALRPPHRKEVLKAREDDIKEKVQNWMSKDSEPRLQRISSELLEEY 409

Query: 422 LKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
                  S LQ+ ++ ND   +      P  +  KNR
Sbjct: 410 DSTELVASLLQELVEANDEVEVQLTFEKP--LARKNR 444


>gi|198432373|ref|XP_002121386.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           [Ciona intestinalis]
          Length = 727

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 131/394 (33%), Positives = 205/394 (52%), Gaps = 3/394 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F   G   K++ A+    + +PTPIQ + IP  +   DV GIA+TG+GKTA+F+ PM  
Sbjct: 244 SFGHFGFDEKIISAIRKHNFTQPTPIQAQGIPCGMSGRDVIGIAKTGSGKTAAFIWPMLV 303

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +    +   P  LI+ PTREL  Q+    +++GK Y L      GG     Q K L
Sbjct: 304 HIMDQPELKKGDGPVGLIVAPTRELCQQIYFECKRFGKVYGLRSVCCYGGGNMHEQQKGL 363

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G ++++ TPGRI+DH  +    +  +  LV DEADRM +MGF   +++I + V   RQ
Sbjct: 364 SDGCEIVVATPGRIIDHVKKKNTNLLRVTYLVFDEADRMFEMGFEYQVRSIANHVRPDRQ 423

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    +++++ + L +P RI           +            K    L + +
Sbjct: 424 TLLFSATFRKRIERLARDILTDPVRIIQGDVGEANADVTQIVEVFKTADMKW-KWLLRRI 482

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               +  + ++F  +K N   L  +L  +G  V  IHG++ Q  R  +++NFK+  +  +
Sbjct: 483 IPFTSEGSLLVFVTKKANAEELATNLINEGHDVALIHGDMQQYDRNNVITNFKKKQVATL 542

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + +V N+DV    + + HRIGRTGRAG+ G A+TLV  +D      
Sbjct: 543 VATDVAARGLDIPLIRNVINYDVARDIDTHTHRIGRTGRAGQKGTAYTLVTSKDTYFSGD 602

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           + + +E     +  DL  L     K   +++ H 
Sbjct: 603 LVRNLEGAGQRVPDDLLQLALQNSKFRKSRYKHG 636


>gi|312371167|gb|EFR19420.1| hypothetical protein AND_22552 [Anopheles darlingi]
          Length = 1161

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 142/469 (30%), Positives = 238/469 (50%), Gaps = 18/469 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+S K    +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 489 TWAHCGVSRKEFEVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 548

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P  +I+ PTREL  Q+  + +K+ K+ NL    + GG     Q  +L
Sbjct: 549 HILDQPPLEDGDGPIAIIMTPTRELCMQIGKDIKKFSKSLNLRTVCVYGGTGISEQIAEL 608

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   +  
Sbjct: 609 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNIRP 668

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   L+ P  ++V   S   +           +   K   L 
Sbjct: 669 DRQTVMFSATFPRQMEALARRILKKPIEVQVGGRSVVCKE--VEQHVVVLEDEAKFFKLL 726

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + I+F ++++N   L   L K  ++  ++HG IDQ  R   +++FK+G +
Sbjct: 727 ELLGLYQEQGSIIVFVDKQENADILLKDLMKASYACMSLHGGIDQFDRDSTMNDFKQGRV 786

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  E  ++
Sbjct: 787 KLLIATSVAARGLDVKQLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAWTFLTPEQGRY 846

Query: 357 IDAIEKLIEKKVDWLNGDLSSL--------NPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
              I + +E     +  DL  L            +K+        +      Q++   + 
Sbjct: 847 AGDIIRALELSGGTVPEDLRQLWDTYKSAQEAEGKKVHTGGGFSGKGFKFDAQEAAAVNE 906

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
           RKK    QK+ + L++S+    L+QDI +        +  +     P N
Sbjct: 907 RKK---MQKAALGLQDSDDEEDLEQDIDQQIESMFATKRIVKEVEAPSN 952


>gi|298387076|ref|ZP_06996630.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           1_1_14]
 gi|298260226|gb|EFI03096.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           1_1_14]
          Length = 647

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 155/481 (32%), Positives = 254/481 (52%), Gaps = 25/481 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP+L
Sbjct: 3   TFEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++    + R+P++LIL PTREL  Q+A +   Y K  +    L + G    ++Q + L
Sbjct: 63  QQIDV---KNRVPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD   R  + ++ +  +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KRGVHIIVATPGRLLDLMERKTVSLSTVHNIVMDEADEMLNMGFTDSINAILADVPKERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+N+LQN K I +   +   E+  +     Y   +K      + +
Sbjct: 180 TLLFSATMSPEIARISKNYLQNAKEITIGRKN---ESTSNVKHVAYTVQAKDKYAALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+
Sbjct: 237 VDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKLRE 356

Query: 360 IEKLIEKKV---------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK-----STG 405
           IE++I KK                L  +   LEK+ + +         I +K        
Sbjct: 357 IERIIGKKFIAGEMPTGKQICEKQLIKVIDELEKVKVNEEEITDFMPEIYRKLEWLSKED 416

Query: 406 FDRRKKNYSSQKSHIPLKESEKISKLQQDIQEN--DADSLGFRGNMPAF-MLPKNRGKLN 462
             +R  ++   +     ++ E+I       + N  D+   G R   P F  L  N GK++
Sbjct: 417 LIKRMVSHEFNRFLDYYRDREEIETPTDSRERNTRDSRERGSRKAAPGFTRLFINLGKMD 476

Query: 463 D 463
            
Sbjct: 477 S 477


>gi|296139030|ref|YP_003646273.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
 gi|296027164|gb|ADG77934.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
           DSM 20162]
          Length = 602

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 143/372 (38%), Positives = 216/372 (58%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLG+  +V+ A+ + GY  P+PIQ  TIP +L  +DV G+AQTGTGKTA+F +P+L
Sbjct: 28  VTFLDLGIDERVLRALAEVGYENPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPVL 87

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + ++      R P+ L+L PTRELA QV++ F KY  +      L I  G  +  Q   L
Sbjct: 88  SKIDG---ESRTPQALVLAPTRELALQVSEAFGKYAVHMPNITVLPIYGGQSYGVQLSGL 144

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR++DH  +G L ++N+E LV+DEAD ML MGF   ++ I +  P  +Q
Sbjct: 145 RRGAQIIVGTPGRVIDHLEKGTLDLSNLEFLVLDEADEMLTMGFQEDVERILADTPEFKQ 204

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   ++K+++ +L +P  I V   ++T   I   ++    Q           +
Sbjct: 205 VALFSATMPPAIRKIAKKYLHDPVEISVKAKTATGSNITQRYLQVAHQRKLDALTRLLEV 264

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   IIF   K     L   L  +G +  AI+G+I Q  R + +   K+G + ++
Sbjct: 265 EEFDGM---IIFVRTKSATEELAEKLRARGHAAAAINGDIVQAQRERTIGQLKDGKVDIL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V   +   + A
Sbjct: 322 VATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRKGDALLFVTPRERHLLRA 381

Query: 360 IEKLIEKKVDWL 371
           IEK   + +  +
Sbjct: 382 IEKATRQPLTEI 393


>gi|125580822|gb|EAZ21753.1| hypothetical protein OsJ_05388 [Oryza sativa Japonica Group]
          Length = 516

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 133/406 (32%), Positives = 207/406 (50%), Gaps = 16/406 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF DL L   ++  + + G V+PTPIQ++ +P+VL   D+ GIA TG+GKT  FVLP++ 
Sbjct: 72  DFRDLRLPEPMLRKLREKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIM 131

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
                 +         P  +I+ P+RELA Q  D  E++           +   L IGG+
Sbjct: 132 VALQEEMMMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLVPLKEAGYPEIRPLLCIGGV 191

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              AQ   +++G  +++ TPGR+ D   + K+ ++N   L +DEADR++D+GF   I+ +
Sbjct: 192 DMRAQLDVVKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 251

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 252 FDHFKAQRQTLLFSATMPKKIQN----FAKSALVKPVIVNVGRAGAANLDVIQEVEYVKE 307

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
              ++  L   Q T    ++FC  K +V  +   L  +G    AIHG  DQ  R   +  
Sbjct: 308 DARIIYLLECLQKTPPPVLVFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERENAIEF 367

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 368 FKNGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 427

Query: 351 KEDIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           K   +  +  ++ L+++    +   L+ LN PLE  +        K
Sbjct: 428 KNQTETTLLDLKHLLKEAKQRIPPVLAELNDPLEDEETMAKESGVK 473


>gi|115444241|ref|NP_001045900.1| Os02g0150100 [Oryza sativa Japonica Group]
 gi|113535431|dbj|BAF07814.1| Os02g0150100 [Oryza sativa Japonica Group]
          Length = 460

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 133/406 (32%), Positives = 207/406 (50%), Gaps = 16/406 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF DL L   ++  + + G V+PTPIQ++ +P+VL   D+ GIA TG+GKT  FVLP++ 
Sbjct: 16  DFRDLRLPEPMLRKLREKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIM 75

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
                 +         P  +I+ P+RELA Q  D  E++           +   L IGG+
Sbjct: 76  VALQEEMMMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLVPLKEAGYPEIRPLLCIGGV 135

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              AQ   +++G  +++ TPGR+ D   + K+ ++N   L +DEADR++D+GF   I+ +
Sbjct: 136 DMRAQLDVVKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 195

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 196 FDHFKAQRQTLLFSATMPKKIQN----FAKSALVKPVIVNVGRAGAANLDVIQEVEYVKE 251

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
              ++  L   Q T    ++FC  K +V  +   L  +G    AIHG  DQ  R   +  
Sbjct: 252 DARIIYLLECLQKTPPPVLVFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERENAIEF 311

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 312 FKNGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 371

Query: 351 KEDIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           K   +  +  ++ L+++    +   L+ LN PLE  +        K
Sbjct: 372 KNQTETTLLDLKHLLKEAKQRIPPVLAELNDPLEDEETMAKESGVK 417


>gi|29348712|ref|NP_812215.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340618|gb|AAO78409.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 647

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 155/481 (32%), Positives = 254/481 (52%), Gaps = 25/481 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP+L
Sbjct: 3   TFEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++    + R+P++LIL PTREL  Q+A +   Y K  +    L + G    ++Q + L
Sbjct: 63  QQIDV---KNRVPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD   R  + ++ +  +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KRGVHIIVATPGRLLDLMERKTVSLSTVHNIVMDEADEMLNMGFTDSINAILADVPKERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+N+LQN K I +   +   E+  +     Y   +K      + +
Sbjct: 180 TLLFSATMSPEIARISKNYLQNAKEITIGRKN---ESTSNVKHVAYTVQAKDKYAALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+
Sbjct: 237 VDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKLRE 356

Query: 360 IEKLIEKKV---------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK-----STG 405
           IE++I KK                L  +   LEK+ + +         I +K        
Sbjct: 357 IERIIGKKFIAGEMPTGKQICEKQLIKVIDELEKVKVNEEEITDFMPEIYRKLEWLSKED 416

Query: 406 FDRRKKNYSSQKSHIPLKESEKISKLQQDIQEN--DADSLGFRGNMPAF-MLPKNRGKLN 462
             +R  ++   +     ++ E+I       + N  D+   G R   P F  L  N GK++
Sbjct: 417 LIKRMVSHEFNRFLDYYRDREEIETPTDSRERNTRDSRERGSRKAAPGFTRLFINLGKMD 476

Query: 463 D 463
            
Sbjct: 477 S 477


>gi|143455555|sp|Q0E3X4|RH35A_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 35A
 gi|51535964|dbj|BAD38045.1| putative DEAD-box protein abstrakt [Oryza sativa Japonica Group]
          Length = 627

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 133/406 (32%), Positives = 207/406 (50%), Gaps = 16/406 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF DL L   ++  + + G V+PTPIQ++ +P+VL   D+ GIA TG+GKT  FVLP++ 
Sbjct: 183 DFRDLRLPEPMLRKLREKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIM 242

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
                 +         P  +I+ P+RELA Q  D  E++           +   L IGG+
Sbjct: 243 VALQEEMMMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLVPLKEAGYPEIRPLLCIGGV 302

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              AQ   +++G  +++ TPGR+ D   + K+ ++N   L +DEADR++D+GF   I+ +
Sbjct: 303 DMRAQLDVVKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 362

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 363 FDHFKAQRQTLLFSATMPKKIQN----FAKSALVKPVIVNVGRAGAANLDVIQEVEYVKE 418

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
              ++  L   Q T    ++FC  K +V  +   L  +G    AIHG  DQ  R   +  
Sbjct: 419 DARIIYLLECLQKTPPPVLVFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERENAIEF 478

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 479 FKNGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 538

Query: 351 KEDIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           K   +  +  ++ L+++    +   L+ LN PLE  +        K
Sbjct: 539 KNQTETTLLDLKHLLKEAKQRIPPVLAELNDPLEDEETMAKESGVK 584


>gi|88808729|ref|ZP_01124239.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. WH 7805]
 gi|88787717|gb|EAR18874.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. WH 7805]
          Length = 429

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 160/403 (39%), Positives = 226/403 (56%), Gaps = 6/403 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DLGL   ++ A+ D GY  P+PIQ + IP V+   DV   AQTGTGKTA F LP+L  
Sbjct: 21  FSDLGLGEPLLEALQDKGYTHPSPIQAQAIPAVIDGRDVMAAAQTGTGKTAGFTLPVLER 80

Query: 63  LEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G+   R   R L+L PTRELAAQV +N   Y  +  L   ++ GG+    Q  +L  
Sbjct: 81  LRHGKPAGRGQIRALVLTPTRELAAQVLENVRAYSSHLPLRSDVVFGGVKANPQINRLRG 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+L+ TPGR+LD   +G L  + +E LV+DEADRMLDMGFI  I+ +  L+P  RQTL
Sbjct: 141 GVDLLVATPGRLLDLHQQGALHFDQLECLVLDEADRMLDMGFIHDIRRLIRLMPVKRQTL 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT +  ++K++   L +P  ++V   + TA ++E                       
Sbjct: 201 LFSATFSAPIRKLASGLLHDPVHLQVTPENQTARSVEQVVHPCDMARKSDLLSHL---IR 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  ++F   K     +   L K+G S  AIHGN  Q +R + L  FK+G I+++VA
Sbjct: 258 AGDWRQVLVFSRTKHGANRVADRLSKEGLSAAAIHGNKSQGARTRALQGFKQGNIRVLVA 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI  + HV N D+PN AE+Y+HRIGRTGRAG  G A +LVA E+   + AIE
Sbjct: 318 TDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRTGRAGETGHAVSLVAAEEALLLKAIE 377

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           +L  +++     D     P + K      +  RK  P   ++ 
Sbjct: 378 RLTGEELTRQTVD--GFEPTVLKAPPLDLSGGRKRPPGKPRAR 418


>gi|289623983|ref|ZP_06456937.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289648770|ref|ZP_06480113.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868972|gb|EGH03681.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 442

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 145/374 (38%), Positives = 216/374 (57%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPAVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV ++  +Y ++  L+     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A ++            K+ A L   
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSV---KQWVVTVDKKRKADLFIH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +      ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 238 LMKKHRWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVDWLN 372
           AIE L  + ++   
Sbjct: 358 AIEVLTRQTLERKE 371


>gi|325983695|ref|YP_004296097.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
           AL212]
 gi|325533214|gb|ADZ27935.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
          Length = 445

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 159/373 (42%), Positives = 223/373 (59%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA  GLS +++ AV + GY  PTPIQ + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFATFGLSDEIIRAVTERGYTVPTPIQKQAIPAVLTGADLLAGAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRARV-----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L     +         R LIL PTRELAAQV ++   YGK   L+  ++IGG+    Q
Sbjct: 61  HRLSDKSVKGPSTGRPPIRALILVPTRELAAQVEESVRDYGKYLKLSSMMMIGGVNINPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L+   D+L+ TPGR+LDH  +  L ++ IEILV+DEADRMLDMGFI  I+ I +L+P
Sbjct: 121 ITRLKSRVDILVATPGRLLDHVQQKTLSLSQIEILVLDEADRMLDMGFIRDIKKILALLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ LLFSAT +DE++ ++++ L  P  IE    ++ A+ + H       +  +     
Sbjct: 181 KQRQNLLFSATFSDEIRALADSLLNQPALIEAARRNAIADKVTHVVHPVDRERKRHL--- 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L  Q      ++F   K     L   L   G    AIHGN  Q +R   L+ FK G+
Sbjct: 238 LAHLIKQHGWSQVLVFTRTKHGANKLAEFLTADGIPALAIHGNKSQTARTTALAKFKTGS 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARG+DI ++ HV NF++P   E+Y+HRIGRTGRAG  G A +LV  +++K
Sbjct: 298 LQVLVATDIAARGIDINELPHVVNFELPQVPEDYVHRIGRTGRAGAEGDAVSLVCVDELK 357

Query: 356 HIDAIEKLIEKKV 368
            + AIEKLI+ ++
Sbjct: 358 LLTAIEKLIKHEL 370


>gi|313899722|ref|ZP_07833225.1| ATP-dependent RNA helicase DbpA [Clostridium sp. HGF2]
 gi|312955337|gb|EFR37002.1| ATP-dependent RNA helicase DbpA [Clostridium sp. HGF2]
          Length = 477

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 132/406 (32%), Positives = 225/406 (55%), Gaps = 10/406 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L   +  A+   GY  P P+Q   IPL+L++ D+   ++TG+GKTASF +P++
Sbjct: 1   MKFEDYKLDASICEALHTLGYQSPLPVQEAVIPLMLEKKDILVKSRTGSGKTASFAIPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L       R P+ L+L PTRELA Q+   F+  G    +  A + G  PF  Q + ++
Sbjct: 61  QDLIW---EERSPQALVLSPTRELALQIKGEFDNIGAYKRIKTAAVFGKQPFRFQAQDVK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V+  TPGR+LDH  +G L    I  ++IDEAD ML+MGFI  +Q I   +P     
Sbjct: 118 QRTHVVAGTPGRVLDHLEQGTLRTEKIRYIIIDEADEMLNMGFIETVQKIFFRLPKNASV 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT+  E+Q+++ +FL+  + +E+ + +S +E + H     Y     +       L 
Sbjct: 178 CMFSATLPQEIQELAHDFLKQAEVVEIESQTSVSEQMHH---YAYRLKEHEKPQALLKLL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  ++ IIF   +++V  +C  L  +G SV  +HG + Q  R++ + +F+ G ++++ 
Sbjct: 235 CRELPESCIIFAKTQEHVREICRMLYDKGISVDQLHGGMLQEDRLENMKDFRLGKLRILT 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV H+ N+D+PN+ E YIHRIGR+ R  R G A + V++ D   +  +
Sbjct: 295 ATDVAARGIDIQDVTHIINYDMPNKKETYIHRIGRSARLDRSGTAISFVSQYDDFRLQEL 354

Query: 361 EKLIEKKVDWLN-GDLSSLNPPLE---KIDIAQHNHARKNNPIPQK 402
           E+ +   +++ +  +L ++    E   K+ I +     K   + + 
Sbjct: 355 EEYLGNALEFHDSSELEAVIADAETLRKLGIPKSQKEEKGKELRKD 400


>gi|301154759|emb|CBW14222.1| ATP-dependent RNA helicase [Haemophilus parainfluenzae T3T1]
          Length = 419

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 207/401 (51%), Gaps = 9/401 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P V  A+ D G+   TPIQ  ++P+ LQ  DV G AQTGTGKT +F+      
Sbjct: 11  FADLPLHPIVQKALQDKGFEYCTPIQALSLPITLQGKDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               +       PR LIL PTRELA Q+  + E   +   L  AL  GG  ++ Q K +E
Sbjct: 71  LLTHQPNFATNQPRALILAPTRELAVQINHDAELLARTSGLRTALAYGGDGYDKQLKAIE 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+LI T GR++D+  +G + +++I+++V+DEADRM D+GFI  I+ +    P  ++ 
Sbjct: 131 AGVDILIGTTGRVIDYVKQGIIRLDDIQVVVLDEADRMFDLGFIRDIRYLLRKCPSPQER 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L    + T   +     F       E        +T        +   ++    L   L 
Sbjct: 191 LTMLFSATLSYKVRELAFEDMNS-PEYIEIEPEQKTGHRIKEELFYPSNEDKIPLLLTLM 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G + ++V
Sbjct: 250 EEEWPERCIVFANTKHKCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGELDILV 309

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL I DV HVFNFD+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ AI
Sbjct: 310 ATDVAARGLHISDVTHVFNFDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPAI 369

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           E+ I   +     D +SL   + K       +  K NP PQ
Sbjct: 370 EEYIGHSIPVSQYDPNSLISDIPK------PYRLKRNPTPQ 404


>gi|254506018|ref|ZP_05118163.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
 gi|219551241|gb|EED28221.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
          Length = 454

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 125/404 (30%), Positives = 194/404 (48%), Gaps = 8/404 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + K T IQ K IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 12  LHFKDLGLDNRLLKNLKHLDFKKATEIQQKAIPVAIAGKDLLASSKTGSGKTLAFVLPML 71

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               K +    + PR +IL PTRELA QV           +    L++GG  F  Q K L
Sbjct: 72  HKSLKSKAFSAKDPRAVILAPTRELAKQVYGELRTMLAGLSYDATLIVGGENFNDQVKAL 131

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +    ++ TPGR+ DH     L +  +E LV+DEADRMLD+GF P ++ I +     R+
Sbjct: 132 RKYPKFIVATPGRLADHLEHRSLFLEGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRR 191

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +     F        +    S  E  +         +      + + +
Sbjct: 192 QTLMFSATLDHAEVNDIAFEMLNAPKRIAVGVSNEEHKDITQKFYLCDHLDHKEAILERV 251

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   K  IIF   + +   L   L ++     A+ GN++Q  R  I+S F+    +++
Sbjct: 252 LQEAEYKQIIIFTATRADTDRLTEKLNEKKLKAIALSGNLNQTQRNTIMSQFERAVFKIL 311

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDI +V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D      
Sbjct: 312 VTTDVASRGLDIANVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKR 371

Query: 360 IEKLIEK-----KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           +E  +++     +++ L G    L P   K D        K+  
Sbjct: 372 VEAYLQQDLSFSELEGLKGKFKGLKP--RKPDFRNKGKVTKSAK 413


>gi|329895875|ref|ZP_08271203.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC3088]
 gi|328922093|gb|EGG29452.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC3088]
          Length = 515

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 150/411 (36%), Positives = 228/411 (55%), Gaps = 13/411 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L L   +  A+ D GY  P+ IQ KTIP +L+  DV G AQTGTGKTA+F LP+L 
Sbjct: 9   TFASLNLPAYLQKALDDVGYEVPSDIQTKTIPPLLEGCDVIGQAQTGTGKTAAFALPILA 68

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++    R +  + L+L PTRELA QVA+ F+ Y ++        I  G  +  Q K+LE
Sbjct: 69  KIDC---RKKQTQCLVLAPTRELAIQVAEAFQSYARHLPGFQVAPIYGGTDYRTQLKQLE 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  +G L ++N+  LV+DEAD ML MGFI  ++ + S +P  RQ 
Sbjct: 126 RGAQVIVGTPGRVMDHMRKGSLKLDNLAHLVLDEADEMLRMGFIDDVEWVMSQLPEKRQI 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   +++++ ++LQ+P+ I V   + TA +I                     + 
Sbjct: 186 ALFSATMPTAIRRIASDYLQDPQHITVTQKTVTATSIRQRVWMISGASK---LDGLTRIL 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K     L   L+ +GF+  A++G++ Q +R +++S  K+G + ++V
Sbjct: 243 EVEDFDGLIIFARTKIATTELADKLQARGFAAAALNGDMAQSAREQVISQLKKGRLDIVV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P   E Y+HRIGRTGRAGR G+A    A  + + +  I
Sbjct: 303 ATDVAARGLDVDRITHVVNYDIPQDPEAYVHRIGRTGRAGRKGEAILFAANREQRLLRMI 362

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           E+   + ++ +        P    +  A+    R    I  K  G D  K+
Sbjct: 363 ERTTGQPIELMR------LPTASDVADAKAEKIRDQIAIGLKRKGLDTAKE 407


>gi|291230627|ref|XP_002735268.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47-like
           [Saccoglossus kowalevskii]
          Length = 446

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 139/408 (34%), Positives = 223/408 (54%), Gaps = 7/408 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL   +        + +PT IQ ++IPL L+  DV G+A+TG+GKT +F LP+L 
Sbjct: 24  TFKSLGLVDVLCETCEQLKWKEPTKIQRESIPLALEGKDVIGLAETGSGKTGAFALPILQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     LIL PTRELA Q+++ FE  G    +  A+++GGI   +Q  +L +
Sbjct: 84  DLLEHPQRLFA---LILTPTRELAFQISEQFEALGSAIGIKCAVVVGGIDMMSQALQLAK 140

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR++DH    K     +++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 141 KPHVVVATPGRLVDHLENTKGFNLRSVKYLVMDEADRILNMDFEIELDKILKVIPRERRT 200

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            L+SATMT ++ K+    L+NP ++EVNT   T E +           SK   +    + 
Sbjct: 201 YLYSATMTKKVAKLQRASLKNPVKVEVNTKYQTVEKLLQ---YYLFIPSKYKDVYLVYIL 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + ++FC+   N   +   L   G +   +HG + Q  R+ +L+ FK     +++
Sbjct: 258 NELAGNSFMVFCSTCNNTQRVALMLRNLGLTAVPLHGQMSQNKRLGMLNKFKGKDRSILI 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAG+ GKA T V + D++    I
Sbjct: 318 ATDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGKSGKAITFVTQYDVELYQRI 377

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           E+LI K++     +   +   +E++  AQ     +      K     R
Sbjct: 378 EQLISKQLPLYPSEEEDVMMLVERVTEAQRYARMEMTDNDDKKRKGRR 425


>gi|255635856|gb|ACU18275.1| unknown [Glycine max]
          Length = 413

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 193/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  SFDAMGLQDNLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     V   + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 101 QLDYS---VTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSS 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+   V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLDTLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D K +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDEKMLFDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     ++ L  +++ L
Sbjct: 396 KFYNVIIEELPSNVAEL 412


>gi|212710200|ref|ZP_03318328.1| hypothetical protein PROVALCAL_01259 [Providencia alcalifaciens DSM
           30120]
 gi|212687199|gb|EEB46727.1| hypothetical protein PROVALCAL_01259 [Providencia alcalifaciens DSM
           30120]
          Length = 428

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 134/412 (32%), Positives = 215/412 (52%), Gaps = 10/412 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKV+ A+   G+   TPIQ  T+P  ++  DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVIEALNKKGFNFCTPIQASTLPYTVEGKDVAGQAQTGTGKTLAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +   PR LI+ PTRELA Q+  + ++  +   L + L  GG  ++ Q +
Sbjct: 70  FLLTHPAIEGKKTNQPRALIMAPTRELAVQIYSDAKELAEYTGLKMGLAYGGDGYDEQLR 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G D+LI T GR++D+  +G + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLQDGVDILIGTTGRLIDYAKQGHVDLAAIQVIVLDEADRMYDLGFIKDIRWLFRRMPSA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
              L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 190 TDRLNLLFSATLSYRVRELAFEQMNSPEYIEVEPLQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++  +  IIF N K    ++   L   G  V  + G++ Q+ R++IL  F +G I 
Sbjct: 249 TLLEEEWPERCIIFANTKHRCDDIWAHLAADGHRVGLLTGDVAQKKRLRILEQFTQGQID 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGNSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            AIE+ I+  +     +    LS L  P  +    + +  R+N+  P++  G
Sbjct: 369 PAIEEYIQHSIPVSKYNSDALLSDLPAPKRRHR-PRPSGPRRNSNAPRRHNG 419


>gi|329121361|ref|ZP_08249987.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
 gi|327469770|gb|EGF15236.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
          Length = 497

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 130/356 (36%), Positives = 212/356 (59%), Gaps = 6/356 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS +++ AV D G+ +P+PIQ + +P+ +Q  D+ G AQTGTGKTA+F +P+L 
Sbjct: 10  TFKELGLSEEIMKAVADMGFEEPSPIQKEAVPIAMQGKDLIGQAQTGTGKTAAFGIPILQ 69

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++        P+ ++L PTRELA Q A+      +  N+    + GG   E Q + L++
Sbjct: 70  RIDTS---KPGPQAIVLSPTRELAIQSAEEINHLAQYMNIKTIPIYGGQDIERQFRALKK 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             ++++ TPGR++DH  R  + ++N++I V+DE D M+DMGFI  I+ I +  P  RQTL
Sbjct: 127 KTNIIVATPGRLMDHMKRKTIDLSNVQIAVLDEGDEMVDMGFIDDIRTIMAATPKERQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   +++++ +FL  P+ +++   + T + I            ++       L  
Sbjct: 187 FFSATMPAPIRELANSFLNEPEIVKIKAATVTIDLI---EQEYIELPDRQKFDALCRLLD 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  I+F   K+    +  +L+K+ +S   +HG++ Q+ R  ++  FKEGTI  +VA
Sbjct: 244 MQSPELAIVFVRTKRRADEVTEALKKRAYSAEGLHGDLSQQKRDSVIRQFKEGTIDFLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +D+AARGLDI  V HV+NFD+P   E Y+HR+GRTGRAG+ G A T V   ++  +
Sbjct: 304 TDVAARGLDISGVTHVYNFDMPQDPEIYVHRVGRTGRAGKTGLATTFVISREMGQL 359


>gi|325179839|emb|CCA14242.1| Os08g0159900 putative [Albugo laibachii Nc14]
          Length = 1173

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 132/431 (30%), Positives = 215/431 (49%), Gaps = 8/431 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + ++  G S ++   +   GYV+P  IQ + +P ++   DV GIA+TG+GKT +F+LPM 
Sbjct: 571 LKWSQCGFSLRLQQLIQKHGYVEPFAIQRQALPAIMAGRDVIGIAKTGSGKTLAFLLPMF 630

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                +        P  LI+ P RELA Q+    +++ K+  L    + GG     Q   
Sbjct: 631 RHILHQPPLKEGEGPIGLIMAPARELAQQIYVEAKRFAKDLGLRATAVYGGSSVSEQIGN 690

Query: 119 LERGADVLICTPGRILDHFNRGKLLM---NNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           L+RG++++ICTPGR++D        +     +  +V+DEADRM DMGF P I  I   + 
Sbjct: 691 LKRGSEIVICTPGRMIDILCMSAGKVVSLQRVSYVVLDEADRMFDMGFEPQITKIIMNIR 750

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT    ++ ++   L  P  I V     +  + +        + S K   L
Sbjct: 751 PDRQTLLFSATFPRAVETLARKVLLKPVEITVGA--RSTASGDITQYVEVREESDKFMRL 808

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            QLL       N ++F N ++    +   L K G+   ++HG  DQ  R   + +FK   
Sbjct: 809 LQLLGYWYGKGNVLVFVNTQQTCDQIFQDLMKAGYPALSLHGGKDQIDRDYTIDDFKRQV 868

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             LMVA+ +A RGLD+ D+  V N+  PN  E+Y+HR+GRTGRAGR G A+T ++ ++ +
Sbjct: 869 RTLMVATSVAGRGLDVKDLVLVVNYHCPNHLEDYVHRVGRTGRAGRKGTAYTFISPDEEE 928

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           +   +   +E     +  +L +L     K  + +       +    K   FD  +KN + 
Sbjct: 929 YAVDLVNALEHAKQTVPTELVTLAENF-KEKVKRGEARYHGSGFKGKGFTFDESEKNETQ 987

Query: 416 QKSHIPLKESE 426
           + + +  ++ E
Sbjct: 988 RTADLQKRQYE 998


>gi|288803318|ref|ZP_06408751.1| ATP-dependent RNA helicase DeaD [Prevotella melaninogenica D18]
 gi|288334138|gb|EFC72580.1| ATP-dependent RNA helicase DeaD [Prevotella melaninogenica D18]
          Length = 553

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 143/460 (31%), Positives = 235/460 (51%), Gaps = 18/460 (3%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
             + + TP+Q K IP +L+ HDV G+AQTGTGKTA+++LP+L+ L  G         +I+
Sbjct: 1   MRFDECTPVQEKCIPEILKGHDVLGVAQTGTGKTAAYLLPVLSKLADGGYPESAINCVIM 60

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIP----FEAQNKKLERGADVLICTPGRIL 134
            PTRELA Q+    + +    N    + + G      ++ + K L  GADV+I TPGR +
Sbjct: 61  SPTRELAQQIDQGMQGFAYYLNGVSCVAVYGGNDGNRYDQELKSLALGADVVIATPGRFI 120

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
            H + G + ++ +   ++DEADRMLDMGF   I  I   +P T QT++FSATM  +++++
Sbjct: 121 SHISLGNVDLSKVSFFILDEADRMLDMGFSDDIMTIAKKLPATCQTIMFSATMPAKIEEL 180

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           ++  L+NP  I++       +  +      Y  Y  +   + + +     +K  IIF   
Sbjct: 181 AKTLLKNPVEIKLAVSKPAEKIQQT----AYVCYETQKMGIIKDIFKAGDLKRVIIFSGS 236

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K+ V  +  SL +   +   +H ++DQ  R  ++  FK G I ++VA+D+ +RG+DI D+
Sbjct: 237 KQKVKQIAGSLNRMHINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDIVSRGIDIDDI 296

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW--LN 372
             V N+DVP+ AE+Y+HRIGRT RA R GKA T V ++DI     IE  +EK+V+   L 
Sbjct: 297 AMVINYDVPHDAEDYVHRIGRTARADRDGKAITFVNEDDIYFFQQIESFLEKEVEKAQLP 356

Query: 373 GDLSSLNPPLEK-IDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPL-------KE 424
            +L                N A+      +       +K+  + Q++  P         E
Sbjct: 357 AELGEGPEYKSNGKPKKAGNSAKSRRRKDRDHQSHKDKKQGNNKQRNRRPAPQTQNNTDE 416

Query: 425 SEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
           +    + ++   + +      + N PA    K   K N++
Sbjct: 417 NNANQQERKAGNKQNHRPQKQQDNNPAATEGKPVNKKNNR 456


>gi|268592936|ref|ZP_06127157.1| ATP-dependent RNA helicase RhlB [Providencia rettgeri DSM 1131]
 gi|291311728|gb|EFE52181.1| ATP-dependent RNA helicase RhlB [Providencia rettgeri DSM 1131]
          Length = 428

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 140/434 (32%), Positives = 224/434 (51%), Gaps = 26/434 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKV+ A+   G+   TPIQ  T+P  ++  DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVIEALNKKGFNFCTPIQASTLPFTVEGKDVAGQAQTGTGKTLAFLTSTFH 69

Query: 62  ILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L         +   PR LI+ PTRELA Q+  + ++  +   L + L  GG  ++ Q K
Sbjct: 70  YLLTHPAIEGKKANQPRALIMAPTRELAVQIYSDAKELAEYTGLKMGLAYGGDGYDEQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G D+LI T GR++D+  +G + ++ ++++V+DEADRM D+GFI  I+ I   +P  
Sbjct: 130 VLQNGVDILIGTTGRLIDYAKQGHVDLSAVQVVVLDEADRMYDLGFIKDIRWIFRRMPGA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 AERLNLLFSATLSYRVRELAFEQMNNPEYVEVEPLQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++  +  IIF N K    ++   L   G  V  + G++ Q+ R++IL  F +G + 
Sbjct: 249 TLLEEEWPERCIIFANTKHRCDDIWAHLAADGHRVGLLTGDVAQKKRLRILEQFTQGHLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGNSISLACEEYSLNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE+ I+  +     +    LS L  P            R++ P P        +++N 
Sbjct: 369 PAIEEYIQHSIPVSKYNSDALLSDLPAP-----------KRRHRPRPGG------QRRNS 411

Query: 414 SSQKSHIPLKESEK 427
           +SQ+ H   + + K
Sbjct: 412 NSQRRHNGPRNNHK 425


>gi|259906863|ref|YP_002647219.1| ATP-dependent RNA helicase RhlB [Erwinia pyrifoliae Ep1/96]
 gi|224962485|emb|CAX53940.1| ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
 gi|283476655|emb|CAY72483.1| putative ATP-dependent RNA helicase [Erwinia pyrifoliae DSM 12163]
 gi|310766111|gb|ADP11061.1| ATP-dependent RNA helicase RhlB [Erwinia sp. Ejp617]
          Length = 430

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 140/422 (33%), Positives = 212/422 (50%), Gaps = 9/422 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P+V+ A+   G+   TPIQ   +P  L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L         +V  PR LIL PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  HLLSHPAPEGRQVNQPRALILAPTRELAVQIHADAEPLAQISGLKIGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G DVLI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDVLIATTGRLIDYAKQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F        V       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSFRVRELAFENMNNAEYVEVEPDQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G + 
Sbjct: 249 TLIEEEWPDRTIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG +G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVD--WLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE+ I   +     N D  +  L PP         N  R+     ++S+      +  
Sbjct: 369 PAIEEYIGHSIPVSRYNSDALMGDLPPPKRLTRNRSGNGPRRGGNNNRRSSAPRSPNRKR 428

Query: 414 SS 415
           S 
Sbjct: 429 SG 430


>gi|2500521|sp|Q40468|IF415_TOBAC RecName: Full=Eukaryotic initiation factor 4A-15; Short=eIF-4A-15;
           AltName: Full=ATP-dependent RNA helicase eIF4A-15
 gi|485945|emb|CAA55739.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 194/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L      +   + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 101 QLAY---ELLECQALVLAPTRELAQQIEKVMRALGDYLGVKVTACVGGTSVREDQRILSS 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V K+D + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ L  +++ L
Sbjct: 396 RFYNVVIEELPANVADL 412


>gi|127512812|ref|YP_001094009.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126638107|gb|ABO23750.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 488

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 160/479 (33%), Positives = 246/479 (51%), Gaps = 42/479 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+LGL   V+  +   GY +PTPIQ + IPL L+  ++   AQTG+GKTA+FVLPML
Sbjct: 1   MTFANLGLPNAVLTNLEQLGYSQPTPIQQEAIPLALKGKNLIAAAQTGSGKTATFVLPML 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           T L +G+  R +  R +IL PTREL  QV D   +YGK   L    + GG+  +AQ ++L
Sbjct: 61  TTLMQGQTQRKKRARAIILAPTRELVLQVNDRIGEYGKGLGLVSMAVYGGVDVQAQKQQL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR+ D + +  +  + +E+LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IEGVDIVVATPGRLRDLYTQRAIRFDEVELLVLDEADRMLDMGFIEDITKILDTLPEERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++  +++++    Q   +    + +   ++              K + L   L
Sbjct: 181 NLLFSATLSRPVRELA---KQAVPKAIHLSVTKNQDSQPDIEQWITTVDKDKKSALLSQL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     +IF   K     L   LEK+G     IH    Q  R +IL++FK G I  +
Sbjct: 238 IKDNAWPQALIFIETKHGAAKLVSQLEKRGIQAECIHSGRTQAVREQILADFKAGKIAYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++ ++ARG+DI ++  V N+D+P  A+ Y+HRIGRTGRAG  G+A +LV+K+D K++  
Sbjct: 298 ISTGISARGIDIDNLPLVINYDLPFPADEYVHRIGRTGRAGAKGEAISLVSKDDFKNLCM 357

Query: 360 IE----KLIEK-----------------------KVDWLNGDLSS-------LNPPLEKI 385
           IE     L+E+                       K +   G+  S       +  P E  
Sbjct: 358 IESRLDHLLERREIEGFAPRKPVPISILNYVPKAKREQAQGEKGSEAAASQGVKAPKEAK 417

Query: 386 DIAQHNHARKNNPIPQKSTGFD----RRKKNYSSQKSHIPLKESEKISKLQQDIQENDA 440
           D  + +  R  +    K+T +      +K   +  KS  P     K  +L+  ++E  A
Sbjct: 418 DKRREDKPRGQSKSQGKATPYKGSSTDKKARPAKAKSAAPSDRGGKDQRLEHKVEEKPA 476


>gi|270294991|ref|ZP_06201192.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274238|gb|EFA20099.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 650

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 152/476 (31%), Positives = 248/476 (52%), Gaps = 33/476 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+SP++  A+ + GY +P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++
Sbjct: 3   TFEELGVSPEIRRAIEEMGYEQPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             +       R+P++LIL PTREL  Q+A +   Y K  +    L + G    E+Q + L
Sbjct: 63  QKINVNN---RIPQSLILCPTRELCLQIAGDLNDYSKYTDGLRVLPVYGGSSIESQIRAL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD   R  + +  I+ +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KRGVHIIVATPGRLLDLMERKTVSLATIQNVVMDEADEMLNMGFTDSINAILADVPQERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+ +L++ K I +   +   E+  +     +  ++K      + +
Sbjct: 180 TLLFSATMSPEIARISKKYLRDAKEITIGRKN---ESTSNVKHVAFCVHAKDKYAALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+
Sbjct: 237 VDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRE 356

Query: 360 IEKLIEKKV---------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK-------- 402
           IE++I KK                L  +   LEK+ + +   A     I +K        
Sbjct: 357 IERIIGKKFIAGEMPTGKQICEKQLLKVIDDLEKVKVNEEEIADFMTDIYRKLDWLSKED 416

Query: 403 ------STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAF 452
                 S  F+R    Y  +        SE+ ++  +    ND  S   R   P F
Sbjct: 417 LIKRMVSHEFNRFLDYYRGRDEIETATGSERGARSGERGDRNDRRS--SRKAEPGF 470


>gi|160888638|ref|ZP_02069641.1| hypothetical protein BACUNI_01055 [Bacteroides uniformis ATCC 8492]
 gi|156861952|gb|EDO55383.1| hypothetical protein BACUNI_01055 [Bacteroides uniformis ATCC 8492]
          Length = 618

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 152/476 (31%), Positives = 248/476 (52%), Gaps = 33/476 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+SP++  A+ + GY +P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++
Sbjct: 3   TFEELGVSPEIRRAIEEMGYEQPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             +       R+P++LIL PTREL  Q+A +   Y K  +    L + G    E+Q + L
Sbjct: 63  QKINVNN---RIPQSLILCPTRELCLQIAGDLNDYSKYTDGLRVLPVYGGSSIESQIRAL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD   R  + +  I+ +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KRGVHIIVATPGRLLDLMERKTVSLATIQNVVMDEADEMLNMGFTDSINAILADVPQERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+ +L++ K I +   +   E+  +     +  ++K      + +
Sbjct: 180 TLLFSATMSPEIARISKKYLRDAKEITIGRKN---ESTSNVKHVAFCVHAKDKYAALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+
Sbjct: 237 VDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRE 356

Query: 360 IEKLIEKKV---------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK-------- 402
           IE++I KK                L  +   LEK+ + +   A     I +K        
Sbjct: 357 IERIIGKKFIAGEMPTGKQICEKQLLKVIDDLEKVKVNEEEIADFMTDIYRKLDWLSKED 416

Query: 403 ------STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAF 452
                 S  F+R    Y  +        SE+ ++  +    ND  S   R   P F
Sbjct: 417 LIKRMVSHEFNRFLDYYRGRDEIETATGSERGARSGERGDRNDRRS--SRKAEPGF 470


>gi|330808371|ref|YP_004352833.1| cold-shock dead-box protein A [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376479|gb|AEA67829.1| cold-shock dead-box protein A [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 557

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 146/386 (37%), Positives = 233/386 (60%), Gaps = 9/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA   L+P ++ AV   GY +P+ IQ ++IP+++  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAAFNLNPNILAAVTATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAFALPILHR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++  +     P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPAKRE---PQALILAPTRELALQVATAFETYSKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + ++  +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKALPATRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++P+ +++ T + T   IE   +  +A       L       
Sbjct: 185 LFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL---E 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKI 385
           ++  +KV    L    + L+  ++K+
Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKL 387


>gi|319642286|ref|ZP_07996945.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_40A]
 gi|317386142|gb|EFV67062.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_40A]
          Length = 422

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 161/428 (37%), Positives = 248/428 (57%), Gaps = 15/428 (3%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM 72
           + A+   GY  PTPIQ + IP++L+  D+ G AQTGTGKTA+F +P++  L +   +   
Sbjct: 1   MKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLIQRLYQSDHKKG- 59

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
            + LIL PTRELA Q+ +NF++Y     +  A++ GG+P +AQ   L+RG  VLI TPGR
Sbjct: 60  IKALILTPTRELAIQIGENFDQYAGYTGVKHAVIFGGVPQKAQVDALKRGVQVLIATPGR 119

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           +LD  ++G + +  +E  V+DEADRMLDMGFI  I+ +  L+P  RQTL FSATM  E++
Sbjct: 120 LLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQTLFFSATMPSEIE 179

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           K++++ L NP++IEV   SST +TI     + Y    K+   L   L     +++ +IF 
Sbjct: 180 KLADSMLTNPEKIEVTPVSSTVDTIRQ---SVYFVEKKEKKDLLLHLLKNPEIESVLIFT 236

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             K     L   L K      AIHGN  Q +R + L+NFK+ T ++++A+D+AARG+D+ 
Sbjct: 237 RTKHGADKLARILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLIATDIAARGIDVN 296

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW-- 370
            + HV N+++PN +E Y+HRIGRTGRAG  G A +    E++ ++  I+KLI  ++    
Sbjct: 297 QLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDIQKLIGLQIPVVK 356

Query: 371 ------LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKE 424
                 + G+ +      E  + A+ N   + +   + +  + RRKK   S++       
Sbjct: 357 DHPWVTVEGEKAQAGKTEELKEKAKANKVYRGS---KSNGDYWRRKKQAQSRQGQGRQSS 413

Query: 425 SEKISKLQ 432
             K S  Q
Sbjct: 414 DRKASGRQ 421


>gi|223995669|ref|XP_002287508.1| atp-dependent RNA DEAD/DEAH box helicase [Thalassiosira pseudonana
           CCMP1335]
 gi|220976624|gb|EED94951.1| atp-dependent RNA DEAD/DEAH box helicase [Thalassiosira pseudonana
           CCMP1335]
          Length = 416

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 185/372 (49%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF D  L  +++  + + G+ KP+PIQ + IP++LQ  +V   A+ GTGKTA++++P L 
Sbjct: 43  DFEDFFLKRELLMGIFEKGFEKPSPIQEEAIPIILQNRNVLARAKNGTGKTAAYIIPCLE 102

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             +  +  V+    LIL PTRELA Q +   ++ GK+  +   +  GG   +    +L  
Sbjct: 103 KTDTTQTYVQ---VLILIPTRELALQTSAIVKEIGKHMGIQCMVTTGGTSLKDDIMRLYN 159

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILD  ++    ++    +++DEAD++L   F P ++ I  L     Q  
Sbjct: 160 SVHIIVATPGRILDLASKKVADLSKCRTIIMDEADKLLSTEFQPVLEKIIDLCDKKHQIC 219

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++  + F+        +       T+            ++       L S
Sbjct: 220 LFSATFPVTVKEFCQKFVP----NPYSINLMDELTLRGITQFYAYVEERQKVHCLNTLFS 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q +R ++   F+ G  + +V 
Sbjct: 276 KLEINQSIIFCNSVNRVELLAKKVTELGYSCYYIHAKMQQANRNRVFHEFRNGATRHLVT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D   +  +E
Sbjct: 336 SDLFTRGIDIQSVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAVNLITYDDRHALRRVE 395

Query: 362 KLIEKKVDWLNG 373
           + +  ++  +  
Sbjct: 396 QDLGTEIRPIPA 407


>gi|148235819|ref|NP_001089455.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Xenopus laevis]
 gi|66910710|gb|AAH97561.1| MGC114699 protein [Xenopus laevis]
          Length = 758

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 154/479 (32%), Positives = 238/479 (49%), Gaps = 15/479 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+    + +PTPIQ   IP+ L   D+C  A TGTGKTA+F+LP+L
Sbjct: 181 LTFQDMNLSRPLLKAISAMSFTQPTPIQKACIPVGLLGKDICACAATGTGKTAAFMLPVL 240

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L        + R L+L PTREL  QV     +  +   +T  L +GG+  + Q   L 
Sbjct: 241 ERLIYKPREAPVTRVLVLVPTRELGIQVHAVTRQLAQFTEVTTCLAVGGLDVKTQEAALR 300

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            G DVLI TPGR++DH  N     +N IE+L++DEADRMLD  F   ++ I  L    RQ
Sbjct: 301 SGPDVLIATPGRLIDHLHNCPSFSLNCIEVLILDEADRMLDEYFEEQMKEIIRLCSHQRQ 360

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM++E++ ++   L+NP RI VN+ +  A  +   FV            +   L
Sbjct: 361 TLLFSATMSEEVKDLASVSLRNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAVACAL 420

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 421 LTRTFQDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 480

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V N  +P   ++Y+HR+GRT RAG+ G++ +LV +E+ K +  
Sbjct: 481 VATDVAARGLDIDGVKTVINLTMPGTVKHYVHRVGRTARAGKAGRSVSLVGEEERKMLKE 540

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH------ARKNNPIPQKSTGFDRRKKNY 413
           I K  +  V         ++   +KI  ++          ++   +          KK  
Sbjct: 541 IVKKAQAPVKARVIPQDVISKFRDKITKSEKEIYAVMQLEKEEREMQMSEAQISVAKKKL 600

Query: 414 SSQK--------SHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
             +K        S    ++  +  KL   +QE D    G +         K +G+L  +
Sbjct: 601 QQEKGGEAQPERSWFQTRDERRKEKLSHALQEFDLAMRGKKKRKKFLSDSKKKGELTSE 659


>gi|16762215|ref|NP_457832.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16767190|ref|NP_462805.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29143704|ref|NP_807046.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62182390|ref|YP_218807.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161617032|ref|YP_001590997.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167553316|ref|ZP_02347066.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167994610|ref|ZP_02575701.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234235|ref|ZP_02659293.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168238371|ref|ZP_02663429.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168244966|ref|ZP_02669898.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168263194|ref|ZP_02685167.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194445390|ref|YP_002043152.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449027|ref|YP_002047935.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194737374|ref|YP_002116850.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197251034|ref|YP_002148844.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|204930263|ref|ZP_03221240.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205354515|ref|YP_002228316.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207859126|ref|YP_002245777.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224585737|ref|YP_002639536.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|61230470|sp|P0A2P0|RHLB_SALTY RecName: Full=ATP-dependent RNA helicase rhlB
 gi|61230478|sp|P0A2P1|RHLB_SALTI RecName: Full=ATP-dependent RNA helicase rhlB
 gi|81309537|sp|Q57HT6|RHLB_SALCH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040036|sp|A9MXF3|RHLB_SALPB RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739543|sp|B5EZ40|RHLB_SALA4 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739545|sp|B5QVH2|RHLB_SALEP RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739546|sp|B5RFS3|RHLB_SALG2 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739547|sp|B4TB13|RHLB_SALHS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739548|sp|B4SZ26|RHLB_SALNS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739550|sp|B4TNT3|RHLB_SALSV RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797690|sp|C0Q2V9|RHLB_SALPC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|25513028|pir||AG0922 probable ATP-dependent RNA helicase rhlB [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16422482|gb|AAL22764.1| putative helicase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16504519|emb|CAD09401.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139339|gb|AAO70906.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62130023|gb|AAX67726.1| putative helicase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161366396|gb|ABX70164.1| hypothetical protein SPAB_04860 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404053|gb|ACF64275.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407331|gb|ACF67550.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194712876|gb|ACF92097.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197214737|gb|ACH52134.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197288752|gb|EDY28127.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|204320667|gb|EDZ05869.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205274296|emb|CAR39317.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205322216|gb|EDZ10055.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327555|gb|EDZ14319.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331809|gb|EDZ18573.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336231|gb|EDZ22995.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205348300|gb|EDZ34931.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710929|emb|CAR35295.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224470265|gb|ACN48095.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261249043|emb|CBG26903.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996196|gb|ACY91081.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160435|emb|CBW19964.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915038|dbj|BAJ39012.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225440|gb|EFX50497.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322716883|gb|EFZ08454.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323132267|gb|ADX19697.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326629650|gb|EGE35993.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332990755|gb|AEF09738.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 421

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 138/413 (33%), Positives = 208/413 (50%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P+VV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 AQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARK-NNPIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIESYIGHSIPVSKYNPEALMNDLPKPLRLTRSRPGNGPRRAGAPRNRRRSG 421


>gi|71029108|ref|XP_764197.1| RNA helicase [Theileria parva strain Muguga]
 gi|68351151|gb|EAN31914.1| RNA helicase, putative [Theileria parva]
          Length = 635

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 198/380 (52%), Gaps = 2/380 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F        ++ ++  AG+ +PTPIQ+++ P+ L   D+ GIA+TG+GKT +F+LP +
Sbjct: 210 VKFEYTSFPRYILSSIEAAGFKEPTPIQVQSWPIALSGRDMIGIAETGSGKTLAFLLPAI 269

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +           P  L+L PTRELA Q+ +    +G++  L  ++  GG+P   Q   
Sbjct: 270 VHINAQALLRPGDGPIVLVLAPTRELAEQIKETALVFGRSSKLKTSVAYGGVPKRFQTIA 329

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG ++LI  PGR++D        +  +  LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 330 LRRGVEILIACPGRLIDFLESSVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDR 389

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT   E+  +S + L +                         +  +K   L++L
Sbjct: 390 QTLMFSATWPKEVIALSRSLLSHEVVHVNIGSLDLTTCHNIEQNVFILEEREKRVKLKEL 449

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+        +IF   KK    L   L   G+    IHG+  Q  R  +L+ FK G   +
Sbjct: 450 LKKLMDGGKILIFSETKKGADTLTRELRLDGWPALCIHGDKKQEERTWVLNEFKSGKHPI 509

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+D+A+RGLD+ DV +V N+D P + E+Y+HRIGRTGRAG  G ++T +  +  K   
Sbjct: 510 MIATDVASRGLDVRDVKYVINYDFPGQIEDYVHRIGRTGRAGMKGSSYTFLTPDKFKSAR 569

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + KL+ +    +  +L  L
Sbjct: 570 ELVKLMREANQEIPPELQKL 589


>gi|294884821|gb|ADF47423.1| eukaryotic initiation factor-4A3 [Dugesia japonica]
          Length = 399

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 126/376 (33%), Positives = 193/376 (51%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   ++  +      KP+ IQ + I  +++  DV   AQ+GTGKT+   L  ++ 
Sbjct: 27  FNKMNLKEDLLRGIXXXXXEKPSAIQARAIKQIVKGRDVIAQAQSGTGKTS---LIAISS 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     +R  + LIL PTRELA Q        G   N+     IGG       KKL+ G
Sbjct: 84  LQLTDINLRETQVLILSPTRELAQQTQKVILALGDYMNVQCHACIGGASMAQDMKKLDYG 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++  TPGR+ D   R  L    I  LV+DEAD MLD GF   I  I   +P   Q +L
Sbjct: 144 QHIVSGTPGRVFDMMQRRNLRTGKISTLVLDEADEMLDKGFKEQIYQIYRYLPPGTQVIL 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  ++ +++  F+ NP RI V     T E I+  FV+   +  K   L    +   
Sbjct: 204 ISATLPHDILEMTSKFMTNPIRILVKRDELTLEGIKQYFVSVEREEWKFDTLCD--IYDT 261

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN K+ V  L   + +  F V +IHG++ Q  R +I   F+    ++++ +
Sbjct: 262 VTVTQVVIFCNTKRKVEWLTEKMRENNFPVSSIHGDMPQGERDEITRQFRALETRVLITT 321

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ ARG+D+  V  V N+D+PN  E YIHRIGR+GR GR G A   V  +D++ +  IE+
Sbjct: 322 DVWARGIDVQHVSLVINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKSDDVRILRDIEQ 381

Query: 363 LIEKKVDWLNGDLSSL 378
               ++D +  +++ L
Sbjct: 382 FYATQIDEMPMNMAEL 397


>gi|33865454|ref|NP_897013.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. WH 8102]
 gi|33632623|emb|CAE07435.1| probable ATP-dependent RNA helicase DeaD [Synechococcus sp. WH
           8102]
          Length = 598

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 137/397 (34%), Positives = 220/397 (55%), Gaps = 13/397 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G S  ++  + D GY +P+PIQ    P ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 47  FDGFGFSEALLKTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLER 121
           L  G+   + P+ L+L PTRELA QVAD+F+ Y   +     L + G   F +Q   L R
Sbjct: 107 LASGQ---KTPQALVLAPTRELAMQVADSFKAYSAGHPHLKVLAVYGGTDFRSQINTLRR 163

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR++DH  +G L  + +  LV+DEAD ML MGFI  ++ I   +P  RQ +
Sbjct: 164 GVDVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILEQLPQERQVV 223

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++S+ +L++P  + + T     + I    +     +        Q +  
Sbjct: 224 LFSATMPPEIRRLSKRYLKDPAEVTIRTKDQEGKRIRQRSITVPMPHK---LEALQRVLD 280

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  IIF   K   + +  +LE  G  V  ++G++ Q  R + +   + G++ ++VA
Sbjct: 281 ACGGEGVIIFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVA 340

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N+D+P  +E Y+HRIGRTGRAGR G+A   V   + + I+ +E
Sbjct: 341 TDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPRERRFINNLE 400

Query: 362 KLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNH 392
           +   + ++ +        +   L+   +++  A HN 
Sbjct: 401 RATGQPIEAMEVPGNSAINQGRLDRLHKRLSEAAHNE 437


>gi|2500527|sp|Q61656|DDX5_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box RNA helicase DEAD1; Short=mDEAD1; AltName:
           Full=DEAD box protein 5; AltName: Full=RNA helicase p68
 gi|51263|emb|CAA46581.1| p68 RNA helicase [Mus musculus]
          Length = 614

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 135/441 (30%), Positives = 221/441 (50%), Gaps = 6/441 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARHNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 154 VHINHHPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 213

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 214 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N  L  L                  R++     K  GF+  +   +
Sbjct: 454 SDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 513

Query: 415 SQKSHIPLKESEKISKLQQDI 435
             + +  L + +  +K Q  +
Sbjct: 514 YDRGYSNLLKRDFGAKTQNGV 534


>gi|145301126|ref|YP_001143967.1| ATP-dependent RNA helicase RhlB [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|189040025|sp|A4STJ7|RHLB_AERS4 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|142853898|gb|ABO92219.1| ATP-dependent RNA helicase RhlB [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 429

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 140/421 (33%), Positives = 220/421 (52%), Gaps = 5/421 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA +GL P+V+  +   G+   TPIQ  ++PL+++ HD+ G AQTGTGKT +F+     
Sbjct: 10  KFAQMGLEPEVLAGLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTIAFLAATFN 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                       V  PR +I+ PTRELA Q+ ++ +    +  L + L  GG  ++ Q  
Sbjct: 70  YLLTHPLSNPRLVNQPRAIIMAPTRELAVQIYNDADTISASTGLKLGLAYGGEGYDKQLA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE+G D+LI T GRI+D+F    + ++NI+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLEQGVDILIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFDLGFIKDIRFLFRRMPAP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T  L+     +        V         I       Y     K  LL  
Sbjct: 190 TERLSMLFSATLSLRVQELAYEHMNHPEHVQIEPEQMTGIRIQEELFYPSNEDKMLLLLS 249

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++  +  I+F N K    ++   LE  G  V  + G++ Q+ RMKIL +F +GT+ 
Sbjct: 250 -LMEEEWPEKAIVFANTKHVCEDVHAWLENDGHRVGLLTGDVPQKKRMKILEDFTKGTLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IPDV HVFN+D+P+ AE+Y+HRIGRTGRAG+ G + +L  ++   ++
Sbjct: 309 ILVATDVAARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKSGHSISLACEDYAFNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            AIE+ I   +     D  +L   +        N    N  +  +  G +   +    +K
Sbjct: 369 PAIEEYIHHPIPVSKYDREALLDDVTAPKRVVRNRQPVNRNMRDRQGGGNSNNRRRPPRK 428

Query: 418 S 418
           S
Sbjct: 429 S 429


>gi|320355280|ref|YP_004196619.1| DEAD/DEAH box helicase domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320123782|gb|ADW19328.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 552

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 143/367 (38%), Positives = 222/367 (60%), Gaps = 6/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA  GL P +V  V + G+  PTPIQ   IPL+L+  D+ G AQTGTGKTA+F LP+L 
Sbjct: 5   TFARFGLHPDLVQTVTELGFTDPTPIQQAAIPLLLEGRDLIGQAQTGTGKTAAFGLPLLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +     R +  + L+L PTRELA QVA+  ++YG+   +TV  + GG  ++ Q + L +
Sbjct: 65  RI---TPRQQGVQALVLAPTRELAIQVAEAIQRYGQQRGITVLAVYGGQAYQQQIRSLRQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G +V++ TPGR+LD  N+G L +  +  +V+DEAD ML MGF+  I+ I   +P  RQT+
Sbjct: 122 GVEVIVGTPGRLLDLMNQGTLDLTTVRTVVLDEADEMLSMGFVEDIELILDRIPAERQTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT++  +  +S  +L++P+ + +     T  TIE  +     Q              
Sbjct: 182 LFSATISKRVLGLSARYLRDPETVSITPKQLTGATIEQRYYLVNQQDKVAALTRL---FE 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +T+ + +IF   +     L + L  +GF   A++G++ Q +R+++L+ F+ G ++++VA
Sbjct: 239 METIDSALIFTRTRIGTGELANQLTSRGFPAEALNGDLSQDARIQVLNRFRNGQVKVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+ HVFNFD+P+  E Y+HR+GRTGRAGR G A +L+  +D   +  IE
Sbjct: 299 TDVAARGLDIDDISHVFNFDLPDDPEVYVHRVGRTGRAGREGIAISLLTPKDRWILRRIE 358

Query: 362 KLIEKKV 368
                K+
Sbjct: 359 DYARYKL 365


>gi|229165218|ref|ZP_04293010.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621]
 gi|228618250|gb|EEK75283.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621]
          Length = 519

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 152/365 (41%), Positives = 220/365 (60%), Gaps = 8/365 (2%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
            G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  ++  +  V+     ++
Sbjct: 1   MGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKEAVQGI---VI 57

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QV +   K GK+  + +  + GG     Q + L++   +++ TPGRILDH N
Sbjct: 58  APTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN 117

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           R  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLLFSATM D +++++E F
Sbjct: 118 RKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERF 177

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           +  P+ I+V     T   I+           KK   +   L    + +  IIF   K+ V
Sbjct: 178 MTEPQHIKVKAKEVTMPNIQQ---FYLEVQEKKKFDVLTRLLDIQSPELAIIFGRTKRRV 234

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             L  +L  +G++   IHG++ Q  RM +L  FKEGTI+++VA+D+AARGLDI  V HV+
Sbjct: 235 DELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGTIEVLVATDVAARGLDISGVTHVY 294

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+  ++KVD +  D  +L
Sbjct: 295 NFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRM--DAPTL 352

Query: 379 NPPLE 383
           +  LE
Sbjct: 353 DEALE 357


>gi|213407104|ref|XP_002174323.1| ATP-dependent RNA helicase dhh1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212002370|gb|EEB08030.1| ATP-dependent RNA helicase dhh1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 498

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 123/430 (28%), Positives = 205/430 (47%), Gaps = 28/430 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + +AG+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+FV+P L 
Sbjct: 46  EFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALAGRDILARAKNGTGKTAAFVIPSLE 105

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +++++    LIL PTRELA Q +   +  GK+ N+ V +  GG        +L  
Sbjct: 106 KVDTKKSKIQT---LILVPTRELALQTSQVCKTLGKHMNVNVMVTTGGTTLRDDIIRLNE 162

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LD   +G    +     V+DEAD++L   F P I+ + +  P  RQ  
Sbjct: 163 PVHIVVGTPGRVLDLAGKGVADFSECSNFVMDEADKLLSPEFTPIIEQLLTHFPKNRQIS 222

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    ++     F+                T+            ++       L S
Sbjct: 223 LYSATFPLLVKS----FMDKHLNKPYEINLMDELTLRGVTQYYAFVDERQKVHCLNTLFS 278

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S    H  + Q  R ++  NF+ G  + +V 
Sbjct: 279 KLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVC 338

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A + ++ ED  ++  IE
Sbjct: 339 SDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWEDRFNLYKIE 398

Query: 362 KLIEKKVDWLNGDLSSLNPPL-----------EKIDIAQH-------NHARKNNPIPQKS 403
             +  ++  +    ++++P L             + ++Q        N   ++ P    +
Sbjct: 399 TELGTEIQPIP---ATIDPSLYVFPDGEYQVPRPLSVSQFPNTNLNPNQPIESQPRNYGN 455

Query: 404 TGFDRRKKNY 413
               RR +NY
Sbjct: 456 NSRTRRGRNY 465


>gi|166713488|ref|ZP_02244695.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 460

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 165/455 (36%), Positives = 245/455 (53%), Gaps = 22/455 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PT IQ + IPLVL  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      V  PR     IL PTRELA QV D+   Y K   +  A++ GG+    Q  
Sbjct: 61  QHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+LI  PGR++DH  R  + ++ IE+L++DEADRMLDMGF+P I+ I + +P  
Sbjct: 121 TLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180

Query: 178 RQTL-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +   LFSAT  + +++++  F++NP +I+V   ++ AE+I H          +   L  
Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               S+   +  ++F   K     L   LEK G    AIHGN  Q  RM+ LS+FK G +
Sbjct: 241 LAQDSR---EQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LVA+++ K 
Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST--GFDRRKKNYS 414
           +  I +++ + V+    D+    P             R  N  P ++   G DR  +   
Sbjct: 358 LRQIVRMLGRDVEI--RDVPGYEP---------QTPIRWGNSAPGRAEQPGGDRAPRKSH 406

Query: 415 SQKSH--IPLKESEKISKLQQDIQENDADSLGFRG 447
           +++ H   P +        +   Q +        G
Sbjct: 407 TRRPHGDAPRQAHAHAGPKKPGGQRSGGPRQANAG 441


>gi|307243618|ref|ZP_07525761.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492987|gb|EFM64997.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
           stomatis DSM 17678]
          Length = 538

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 146/384 (38%), Positives = 226/384 (58%), Gaps = 9/384 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L +S ++  A+ D GY +P+PIQ + IP +++ HDV G AQTGTGKTASF +P+L 
Sbjct: 5   KFNELQVSEEIKRAIEDLGYEEPSPIQAQAIPCMIEGHDVIGQAQTGTGKTASFSIPILE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            +++   +++     +L PTRELA QV++   K  K       L I  G P + Q K L+
Sbjct: 65  NIDRDNRKLQAI---VLCPTRELAIQVSEEVRKLAKYMQGIRTLPIYGGQPIDRQIKALK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  V I TPGR++DH NR  L ++ ++++V+DEAD MLDMGF   I+ I S VP  RQT
Sbjct: 122 GGVQVAIGTPGRVIDHINRKTLKLDQVKMVVLDEADEMLDMGFREDIETILSNVPEERQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   + ++++ + ++P  I+V   + T   I+  ++ T      +         
Sbjct: 182 ALFSATMPKAILELTKKYQKDPVHIKVVRKTLTVSNIKQYYIETRKSNKLEVLTRLL--- 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  ++F N KK    L  SL+ +G+   ++HG++ Q  R  ++  F+ GTI ++V
Sbjct: 239 DVYNPKLTVVFTNTKKGADELVSSLQARGYGADSLHGDLKQVQRDIVMDKFRAGTIDILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV  V N+++P   E Y+HRIGRTGRAGR G AF+     +++ +  I
Sbjct: 299 ATDVAARGIDIDDVECVINYELPQDDEYYVHRIGRTGRAGREGIAFSFAFGREMRKLKDI 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E+  + K+  +  D+ S+N   EK
Sbjct: 359 ERYTKSKI--VKHDIPSVNDVEEK 380


>gi|222640112|gb|EEE68244.1| hypothetical protein OsJ_26445 [Oryza sativa Japonica Group]
          Length = 2897

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 218/379 (57%), Gaps = 2/379 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G  P+++  +  AG++ PTPIQ +T P+ LQ  D+  IA+TG+GKT  +++P  
Sbjct: 603 MTFEATGFPPEILQEIHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTLGYLIPAF 662

Query: 61  TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L + +      P  L+L PTRELA+Q+ D   K+G++  ++   L GG     Q ++L
Sbjct: 663 IHLRRYQNNPMLGPTVLVLAPTRELASQIQDEAVKFGRSSRVSCTCLYGGTSKGLQLREL 722

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGAD+++ TPGR+ D     K+ ++ +  LV+DEADRMLDMGF P I+ I   +P  RQ
Sbjct: 723 ERGADIVVATPGRLNDILEMRKISLHQVSFLVLDEADRMLDMGFEPQIRKIVDEIPRNRQ 782

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+++AT   E+ K++ + L++P ++ + +                     K   L+Q+L
Sbjct: 783 TLMYTATWPKEVTKIAGDLLKDPVQVNIGSIDELVANKSITQYVEVVPPLDKQRRLEQIL 842

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++Q+     IIFC+ KK   +       + F   +IHG+  Q  R  +L+ F+ G   ++
Sbjct: 843 RAQERGSKVIIFCSTKKMC-DQLARDIGRSFGAASIHGDKSQAERDNVLNQFRTGRAPIL 901

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G ++T  +++D K+   
Sbjct: 902 VATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKYAGD 961

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E     +  +L  +
Sbjct: 962 LVKVLEGANQHVPPELQEM 980


>gi|70725957|ref|YP_252871.1| hypothetical protein SH0956 [Staphylococcus haemolyticus JCSC1435]
 gi|123660708|sp|Q4L7W0|Y956_STAHJ RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SH0956
 gi|68446681|dbj|BAE04265.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 503

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 148/462 (32%), Positives = 232/462 (50%), Gaps = 16/462 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S K V  +   G+ +PTPIQ  +IP  L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDKTVETLEAMGFKEPTPIQKDSIPYTLEGKDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +          + LIL PTRELA QVA+   ++ +  N+ V  + GG+P + Q K L+R
Sbjct: 63  KVVGQ----SGVQALILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPIDRQIKALKR 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L  N I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     +     +  K           
Sbjct: 179 MLFSATMPKAIQTLVQQFMKSPQIVKTMNNEMSDPQIDEYYTIVKELEKFDTFT--NFLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 237 VHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 297 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
               ++++       +L PP  K  +       K+      S   + R K  SS+     
Sbjct: 357 DSNGRRMN-------ALRPPHRKEVLKAREDDIKDKVKNWMSRESEARLKRISSELLEEY 409

Query: 422 LKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR-GKLN 462
                  S LQ+ ++ ND   +      P  +  KNR GK N
Sbjct: 410 DSTELVASLLQELVEANDEVEVQLTFEKP--LARKNRQGKGN 449


>gi|34557821|ref|NP_907636.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Wolinella
           succinogenes DSM 1740]
 gi|34483539|emb|CAE10536.1| ATP-DEPENDENT RNA HELICASE, DEAD-BOX FAMILY DEAD [Wolinella
           succinogenes]
          Length = 505

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 143/384 (37%), Positives = 218/384 (56%), Gaps = 9/384 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G    ++  + +AG+  P+PIQ++ IPLVL  HD+   AQTGTGKTA+F LP++  
Sbjct: 16  FEQFGFKENLLRGIHEAGFKVPSPIQVEAIPLVLGGHDLIAQAQTGTGKTAAFGLPIIQN 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+           LI+ PTRELA Q++D   K G+N       + GG     Q + LE+ 
Sbjct: 76  LKND----GSIEALIITPTRELAVQISDEIFKLGRNCRTKTVSVYGGQAIRRQVELLEKA 131

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+I TPGR+LDH    +L   N   +V+DE+D MLDMGF+  I+ I + +P +RQTLL
Sbjct: 132 PQVIIATPGRLLDHLRNDRLKNFNPTTIVLDESDEMLDMGFLDDIEEIFTYLPASRQTLL 191

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   ++ +++  L NPK ++V T  +T   I   +        +   +        
Sbjct: 192 FSATMPAPIKNLAQKILHNPKMVKVTTNETTNSDISQRYYIINEYEREDAIVRL---IDS 248

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     IIF   KK   +L + L  +G+   A+HG+++QR R   ++ FK+G I ++VA+
Sbjct: 249 EAPSKTIIFTRMKKEADDLSNRLIAKGYQAGALHGDMEQRERQAAVNAFKQGAIDILVAT 308

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI +V HVFN+ +P   E+Y+HRIGRTGRAG+ G A TL    + K I  I +
Sbjct: 309 DVAARGLDISNVSHVFNYHIPLNPESYVHRIGRTGRAGKKGIAITLATPLEFKEIRRISE 368

Query: 363 LIEKKVDWLNGDLSSLNPPLEKID 386
             +  ++    ++ ++   L++ D
Sbjct: 369 TTKATIELY--EIPTIAETLKQTD 390


>gi|116872678|ref|YP_849459.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741556|emb|CAK20680.1| ATP-dependent RNA helicase DbpA family [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 470

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 129/431 (29%), Positives = 210/431 (48%), Gaps = 22/431 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+  +L LS ++  A+ + GY + TP+Q   IP+ L   D+   +QTG+GKTA+F +P+ 
Sbjct: 1   MN--NLNLSDEIKKAITELGYNEATPVQKAVIPIALTGEDIVAKSQTGSGKTAAFAIPIA 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +   P+ LI+ PTRELA QV       G+   +  A + G  PF  Q  +L 
Sbjct: 59  EQVVWEENK---PQALIIVPTRELAMQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELS 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+LDH  +G L ++ +  LV+DE D ML MGFI  +++I S +P  RQ 
Sbjct: 116 QKNHIVVGTPGRLLDHIEKGTLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKKRQN 175

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM +             KR + N       + +   +      +       + + 
Sbjct: 176 LFFSATMPE-------EMQDLIKRYQDNPMVIEMASEKTNPIFHVEMQTDTKEKTLKDVL 228

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +   + IIFCN K  V  L             IHG + Q  R + +  FK G  + ++
Sbjct: 229 ITENPDSAIIFCNTKNQVDELSE---MLDLRTSKIHGGLRQEDRFQAMDEFKSGKSRFLI 285

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A RG+D+ +V  V N+D+P   ENY+HRIGRTGRAG  GKA + V  ++   +  I
Sbjct: 286 ATDVAGRGIDVENVSLVINYDLPIEKENYVHRIGRTGRAGNSGKAISFVKTQENPLLRDI 345

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+++   ++          P + ++  ++    +K    P         K N +  K + 
Sbjct: 346 EEMLNISIEKKR------KPTIIEVRASEEAFHKKQQKRPTIKKARGE-KLNKNIMKLYF 398

Query: 421 PLKESEKISKL 431
              + +KI  +
Sbjct: 399 NGGKKKKIRAV 409


>gi|21230065|ref|NP_635982.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769942|ref|YP_244704.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188993155|ref|YP_001905165.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21111589|gb|AAM39906.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66575274|gb|AAY50684.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167734915|emb|CAP53127.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris]
          Length = 462

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 160/437 (36%), Positives = 237/437 (54%), Gaps = 10/437 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PT IQ + IPLVL  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      V  PR     IL PTRELA QV D+   Y K   +  A++ GG+    Q  
Sbjct: 61  QHLGTTPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+LI  PGR++DH  R  + ++ IE+L++DEADRMLDMGF+P I+ I + +P  
Sbjct: 121 ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180

Query: 178 RQTL-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +   LFSAT  + +++++  F++NP +I+V   ++ AE+I H          +   L  
Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               S+   +  ++F   K     L   LEK G    AIHGN  Q  RM+ LS+FK G +
Sbjct: 241 LAQDSR---EQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LVA+++ K 
Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  I +++ + V+    D+    P    I        R   P   ++      ++ +   
Sbjct: 358 LRQIVRMLGRDVEI--RDVPGYEPQT-PIRWGNSAPGRAEQPGGDRAPRKSHARRPHGDA 414

Query: 417 KSHIPLKESEKISKLQQ 433
                     K    Q+
Sbjct: 415 PRQAHAHAGPKKPGGQR 431


>gi|229190613|ref|ZP_04317610.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 10876]
 gi|228592958|gb|EEK50780.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 10876]
          Length = 458

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 141/410 (34%), Positives = 229/410 (55%), Gaps = 11/410 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFIM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           EK +   +     +     P ++++D       +       ++   D R+
Sbjct: 360 EKTLGAPIQREIIE----QPKIKRVDENGKPVPKPAPKKSGQNRQRDSRE 405


>gi|187251183|ref|YP_001875665.1| superfamily II DNA and RNA helicase [Elusimicrobium minutum Pei191]
 gi|186971343|gb|ACC98328.1| Superfamily II DNA and RNA helicase [Elusimicrobium minutum Pei191]
          Length = 502

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 146/439 (33%), Positives = 238/439 (54%), Gaps = 13/439 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  LS   +  + + G+  PTP+Q +TIPL ++ HDV   AQTG+GKT +F +P++ 
Sbjct: 5   NFQDFSLSEITLKTIENMGFTTPTPVQAQTIPLAIEGHDVLASAQTGSGKTCAFGIPVIE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L + ++       LI+ PTREL  QV   F    KNY   T A ++GG     Q++ L+
Sbjct: 65  HLVQNKSN----NALIVTPTRELGEQVHKVFTMLTKNYPQLTSAFIVGGKSITQQSRALK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +    +I TPGR+ D  NRG+L ++  ++ V DE DRMLD+GFI  I++I + +P  RQ 
Sbjct: 121 KRPRCIIGTPGRLNDMINRGELDLSKTKVAVWDEMDRMLDIGFINQIESIMAKLPVKRQM 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT    + K++E +L  PKRI V+  +S A  +E   ++      +       +  
Sbjct: 181 MMFSATYPKRVIKIAEKYLVAPKRISVDPENSVAVNVEEEIISVI----RDNKFETLVSL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + +IF   + +V  L   L K+ F   +IHG   Q  R   + +F+E    ++V
Sbjct: 237 LRAKGGSTLIFARTQTSVEWLDKHLTKESFKANSIHGGYRQGKRNLAIKDFREEKFDILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP +  V N+D+P RAE+YIHRIGRT RAG  G A + V   D    + I
Sbjct: 297 ATDVAARGLDIPHIQLVINYDLPLRAEDYIHRIGRTARAGAKGLAISFVTPNDKHLWNDI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           +K ++ + D +   +   +   +K + A  +  R+N     +   F ++K N   +K  +
Sbjct: 357 QKFLKGQ-DVVQRPIGRAHKE-QKQNFA--SKKRENKKSQNQKKDFKKKKVNAEPKKEPL 412

Query: 421 PLKESEKISKLQQDIQEND 439
              E  + ++++  I+  +
Sbjct: 413 TFAEKRREARIKTKIENKN 431


>gi|251778643|ref|ZP_04821563.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243082958|gb|EES48848.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 480

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 129/388 (33%), Positives = 217/388 (55%), Gaps = 8/388 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    LS +++ A+ + GY  P+ +Q K IP VL+  D+   +QTG+GKTASF +P+  
Sbjct: 4   EFNKFELSGELLKAIDNLGYKTPSEVQEKAIPEVLRNKDLVVKSQTGSGKTASFGIPLCE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +   P+ L+L PTRELA Q++++    G+   +    + G      Q +KL++
Sbjct: 64  KIDWDENK---PQVLVLAPTRELAVQISEDISNIGRYKRINCVPIFGKQSIMDQERKLKQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH +RG L ++ I   VIDEAD ML+MGFI  ++ I   +P  R TL
Sbjct: 121 KTHIVVGTPGRVLDHIDRGSLDVSKINYFVIDEADEMLNMGFIKQVEAIIRRIPKKRVTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ DE++ + +  +  P  I + + + T++ + H                   +  
Sbjct: 181 LFSATIPDEIKNLCDKHMNRPIDIAIKSQNLTSDNVSHYAYHVGYNQK---LDSLNNILI 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  ++FC  K+NV  +   L K+G+S   IHG + Q+ R+  +  F+ G  +++VA
Sbjct: 238 SEMPETSVVFCRTKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFRILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RG+DI  + HV N+D+P   E Y+HRIGRTGRAG  G A T       ++++ IE
Sbjct: 298 TDIASRGIDIEGITHVINYDIPVEKEAYVHRIGRTGRAGAKGVALTFCKDSGDRYLNEIE 357

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKIDI 387
           + I  K++   L      +N   + I++
Sbjct: 358 EYIGFKLEVKNLPSKEEIINCSEKAIEV 385


>gi|194216574|ref|XP_001490317.2| PREDICTED: similar to Eukaryotic initiation factor 4A-III
           (Eukaryotic translation initiation factor 4A isoform 3)
           (ATP-dependent RNA helicase eIF4A-3) (ATP-dependent RNA
           helicase DDX48) (DEAD box protein 48) (Eukaryotic
           initiation factor 4A-like NUK-34) (Nucl [Equus caballus]
          Length = 375

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 117/377 (31%), Positives = 189/377 (50%), Gaps = 41/377 (10%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L 
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + LIL PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 99  CLDI---QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +
Sbjct: 156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V          +                       
Sbjct: 216 LISATLPHEILEMTNKFMTDPIRILVKRFYYIHPLFDP---------------------- 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                           V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  +++++
Sbjct: 254 ----------------VDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P V  + N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE
Sbjct: 298 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 357

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 358 QYYSTQIDEMPMNVADL 374


>gi|58580393|ref|YP_199409.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58424987|gb|AAW74024.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 484

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 160/437 (36%), Positives = 237/437 (54%), Gaps = 10/437 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PT IQ + IPLVL  HD+   AQTGTGKTA+F LP+L
Sbjct: 25  MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 84

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      V  PR     IL PTRELA QV D+   Y K   +  A++ GG+    Q  
Sbjct: 85  QHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 144

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+LI  PGR++DH  R  + ++ IE+L++DEADRMLDMGF+P I+ I + +P  
Sbjct: 145 TLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 204

Query: 178 RQTL-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +   LFSAT  + +++++  F++NP +I+V   ++ AE+I H          +   L  
Sbjct: 205 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL 264

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               S+   +  ++F   K     L   LEK G    AIHGN  Q  RM+ LS+FK G +
Sbjct: 265 LAQDSR---EQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 321

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LVA+++ K 
Sbjct: 322 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 381

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  I +++ + V+    D+    P    I        R   P   ++      ++ +   
Sbjct: 382 LRQIVRMLGRDVEI--RDVPGYEPQT-PIRWGNSAPGRAEQPGGDRAPRKSHARRPHGDA 438

Query: 417 KSHIPLKESEKISKLQQ 433
                     K    Q+
Sbjct: 439 PRQAHAHAGPKKPGGQR 455


>gi|84622357|ref|YP_449729.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84366297|dbj|BAE67455.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 460

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 160/437 (36%), Positives = 237/437 (54%), Gaps = 10/437 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PT IQ + IPLVL  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      V  PR     IL PTRELA QV D+   Y K   +  A++ GG+    Q  
Sbjct: 61  QHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+LI  PGR++DH  R  + ++ IE+L++DEADRMLDMGF+P I+ I + +P  
Sbjct: 121 TLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180

Query: 178 RQTL-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +   LFSAT  + +++++  F++NP +I+V   ++ AE+I H          +   L  
Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               S+   +  ++F   K     L   LEK G    AIHGN  Q  RM+ LS+FK G +
Sbjct: 241 LAQDSR---EQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LVA+++ K 
Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  I +++ + V+    D+    P    I        R   P   ++      ++ +   
Sbjct: 358 LRQIVRMLGRDVEI--RDVPGYEPQT-PIRWGNSAPGRAEQPGGDRAPRKSHARRPHGDA 414

Query: 417 KSHIPLKESEKISKLQQ 433
                     K    Q+
Sbjct: 415 PRQAHAHAGPKKPGGQR 431


>gi|327279490|ref|XP_003224489.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Anolis
           carolinensis]
          Length = 600

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 141/455 (30%), Positives = 228/455 (50%), Gaps = 7/455 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +      V+  +    +  PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 90  MNFYEANFPANVMEVIQRQNFTDPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 149

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +YG+   L    + GG P   Q + 
Sbjct: 150 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYGRACRLKSTCIYGGAPKGPQIRD 209

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 210 LERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 269

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL+    I +     +A       V       K   L++ +
Sbjct: 270 QTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLM 329

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+   +L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 330 EEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 389

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 390 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 449

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD-RRKKNYSSQ 416
             +  ++ +    +N  L  L   +E     +    R++     K  GF  R ++N+   
Sbjct: 450 SDLISVLREANQAINPKLLQL---VEDRGSGRSRGDRRDRYSAGKRGGFGFRERENFERT 506

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
              +  ++    ++      +   +  GF  N  A
Sbjct: 507 YGAVGKRDFGAKTQNGGYGAQGFGNGTGFGSNFGA 541


>gi|308189119|ref|YP_003933250.1| Cold-shock DEAD box protein A [Pantoea vagans C9-1]
 gi|308059629|gb|ADO11801.1| Cold-shock DEAD box protein A [Pantoea vagans C9-1]
          Length = 640

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 135/378 (35%), Positives = 228/378 (60%), Gaps = 8/378 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+  ++ ++   GYVKP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     V+ P+ L+L PTRELA QVA+   ++ K+      + +  G  ++ Q + L 
Sbjct: 67  NIDPT---VKAPQILVLAPTRELAVQVAEAITEFSKHMRGLNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQVVVGTPGRLLDHLKRGTLELSNLRGLVLDEADEMLRMGFIEDVETIMAQIPAGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + ++++++ F+++P+ + + +  +T   I   +   Y + +       +   
Sbjct: 184 ALFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSYWTAYGRKTDALVRFLE--- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 -AEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 359

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 360 ERTMKLTIPEVELPNAEL 377


>gi|297571406|ref|YP_003697180.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931753|gb|ADH92561.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 620

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 136/372 (36%), Positives = 210/372 (56%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L   ++ AV D G+  PT IQ + IPL+L+  DV G+AQTGTGKTA+F LPML 
Sbjct: 6   TFADLNLPETILSAVTDLGFTSPTAIQEQAIPLLLEGRDVLGVAQTGTGKTAAFALPMLA 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKLE 120
            ++     V+    L+L PTRELA Q A+    +         + + G   +  Q   L 
Sbjct: 66  HVDPNNRHVQ---ALVLAPTRELALQGAEAINTFAARTGGLDVVAVYGGSAYGPQLGALR 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGR++D  +RG L ++ I   V+DEAD ML MGF   ++ I + +P  R +
Sbjct: 123 DGAQVVVGTPGRVMDMIDRGALDLSTIRYFVLDEADEMLRMGFAEDVEKIATGLPEERIS 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  +++ V+E  L NP  ++V++PSST +TI           ++        + 
Sbjct: 183 ALFSATMPKQIRMVAETHLNNPAEVQVSSPSSTVDTI---TQTYAVVPTRHKIGALARVL 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       ++F   +    +L   L  +G    A+ G++ Q+ R K++   ++G+I ++V
Sbjct: 240 ATTEADAALVFVRTRATAEDLAIELSTRGVQAAALSGDVAQKDREKLVDRLRQGSIDVLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +G V NFD+P   E Y+HRIGRTGRAGR G A + V  ++ + +  I
Sbjct: 300 ATDVAARGLDVERIGLVVNFDIPREVETYVHRIGRTGRAGREGTALSFVTPKEKQRLRRI 359

Query: 361 EKLIEKKVDWLN 372
           EK+   ++  + 
Sbjct: 360 EKVTRTQMTQVE 371


>gi|229178806|ref|ZP_04306167.1| ATP-dependent RNA helicase [Bacillus cereus 172560W]
 gi|228604682|gb|EEK62142.1| ATP-dependent RNA helicase [Bacillus cereus 172560W]
          Length = 458

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 141/410 (34%), Positives = 229/410 (55%), Gaps = 11/410 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFIM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           EK +   +     +     P ++++D       +       ++   D R+
Sbjct: 360 EKTLGAPIQREIIE----QPKIKRVDENGKPVPKPAPKKSGQNRQRDSRE 405


>gi|153831249|ref|ZP_01983916.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           623-39]
 gi|229522732|ref|ZP_04412148.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|229527951|ref|ZP_04417342.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|297579800|ref|ZP_06941727.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae RC385]
 gi|148873269|gb|EDL71404.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           623-39]
 gi|229334313|gb|EEN99798.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|229340717|gb|EEO05723.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|297535446|gb|EFH74280.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae RC385]
          Length = 452

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 123/394 (31%), Positives = 189/394 (47%), Gaps = 6/394 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR LIL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 65  HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG   ++ TPGR+ DH +   L +  +E LV+DEADRMLD+GF   ++ I +     R+
Sbjct: 125 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D             +   +     + E  +         +      L   +
Sbjct: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRI 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  IIF   + +   L   L +      A+ GN++Q  R  I+  F+    +++
Sbjct: 245 LADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDIP V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D +    
Sbjct: 305 VTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKR 364

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKIDIA 388
           +E  +++++ +     L G    L P   K   A
Sbjct: 365 VEAFLQQEIQFEVLAGLEGKFKGLKPRQAKPKAA 398


>gi|15600832|ref|NP_232462.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|153823246|ref|ZP_01975913.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae B33]
 gi|227811688|ref|YP_002811698.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
 gi|229506763|ref|ZP_04396272.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229510442|ref|ZP_04399922.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229517427|ref|ZP_04406872.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
 gi|229605237|ref|YP_002875941.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254850327|ref|ZP_05239677.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
 gi|298499926|ref|ZP_07009732.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae MAK 757]
 gi|9657444|gb|AAF95975.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126519233|gb|EAZ76456.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae B33]
 gi|227010830|gb|ACP07041.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
 gi|229345463|gb|EEO10436.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
 gi|229352887|gb|EEO17827.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229357114|gb|EEO22032.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229371723|gb|ACQ62145.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254846032|gb|EET24446.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
 gi|297541907|gb|EFH77958.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae MAK 757]
          Length = 452

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 123/394 (31%), Positives = 189/394 (47%), Gaps = 6/394 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR LIL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 65  HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG   ++ TPGR+ DH +   L +  +E LV+DEADRMLD+GF   ++ I +     R+
Sbjct: 125 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D             +   +     + E  +         +      L   +
Sbjct: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRI 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  IIF   + +   L   L +      A+ GN++Q  R  I+  F+    +++
Sbjct: 245 LADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDIP V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D +    
Sbjct: 305 VTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKR 364

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKIDIA 388
           +E  +++++ +     L G    L P   K   A
Sbjct: 365 VEAFLQQEIQFEVLAGLEGKFKGLKPRQAKPKAA 398


>gi|297800452|ref|XP_002868110.1| hypothetical protein ARALYDRAFT_493213 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313946|gb|EFH44369.1| hypothetical protein ARALYDRAFT_493213 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 213/448 (47%), Gaps = 22/448 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  ++ A    GY KPTPIQ   IPL L   D+C  A TG+GKTA+F LP L 
Sbjct: 171 SFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 230

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     RV   R LIL PTRELA Q+    +K  +  ++   L++GG+    Q   L  
Sbjct: 231 RLLFRPKRVFATRVLILTPTRELAVQIHSMIQKLAQFTDIKCGLIVGGLSVREQEVVLRS 290

Query: 122 GADVLICTP-GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D+++ TP   I    N   + ++++ +L++DEADR+L  GF   I  +  L P  RQT
Sbjct: 291 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQT 350

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+E++++ +  L  P R+  +  +     +    V            +   L 
Sbjct: 351 MLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLC 410

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      IIF   K+    L       G     +HGN+ Q  R+  L  F++  +  ++
Sbjct: 411 TRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLI 470

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V N+  P   ++Y+HR+GRT RAGR G A T V   D   +  I
Sbjct: 471 ATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVI 530

Query: 361 EKLIEKK-----------------VDWLNGDLSSLNPPLEK---IDIAQHNHARKNNPIP 400
            K +  K                 +D +    S++         +  A+   A+  N + 
Sbjct: 531 AKKVGSKLKSRVIPEQSIVKWSHIIDEMEDQYSAVISAERDERALRKAEMEFAKAENMLE 590

Query: 401 QKSTGFDRRKKN-YSSQKSHIPLKESEK 427
            +   + R K+  + ++K    + ++EK
Sbjct: 591 HRDEIYARPKRTWFMTEKEKKLVAQAEK 618


>gi|229109888|ref|ZP_04239470.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-15]
 gi|228673542|gb|EEL28804.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-15]
          Length = 458

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 142/410 (34%), Positives = 228/410 (55%), Gaps = 11/410 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP +L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPFILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPECSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           EK +   +     +     P ++++D       +       ++   D R+
Sbjct: 360 EKTLGAPIQREIIE----QPKIKRVDENGKPVPKPAPKKSGQNRQRDSRE 405


>gi|261251481|ref|ZP_05944055.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
 gi|260938354|gb|EEX94342.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
          Length = 443

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 126/420 (30%), Positives = 201/420 (47%), Gaps = 8/420 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + K T IQ K IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MYFKDLGLDNRLLKNLKHFDFKKATEIQQKAIPVAIAGKDLLASSKTGSGKTLAFVLPML 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR L+L PTRELA QV           +    L++GG  F  Q K L
Sbjct: 61  HKSLKNKAFSAKDPRALVLAPTRELAKQVYGELRSMLGGLSYDATLIVGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +    ++ TPGR+ DH     L ++ +E LV+DEADRMLD+GF P ++ I +     R+
Sbjct: 121 RKYPKFIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +     F        +   +++ E  +         +      + + +
Sbjct: 181 QTLMFSATLDHAEVNDIAFEMLDAPKRIAVGAASEEHKDITQKFYLCDHLDHKEAILERI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   K  IIF   + +   L   L ++     A+ G+++Q  R  I+S F+    +++
Sbjct: 241 LEEAQYKQLIIFTATRIDTERLTQKLNEKKLKAVALSGSLNQTQRNTIMSQFERAVFKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDI +V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D      
Sbjct: 301 VTTDVASRGLDIANVTHVVNFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKR 360

Query: 360 IEKLIEK-----KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +E  +++     +++ L G    L P   K D      A        K +     K++ S
Sbjct: 361 VEAYLQQDLSFSELEGLIGKFKGLRP--RKPDFRNKGKAADKAKPQAKKSAKKPVKRDKS 418


>gi|206971476|ref|ZP_03232426.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|206733461|gb|EDZ50633.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
          Length = 458

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 141/410 (34%), Positives = 229/410 (55%), Gaps = 11/410 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFIM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           EK +   +     +     P ++++D       +       ++   D R+
Sbjct: 360 EKTLGAPIQREIIE----QPKIKRVDENGKPVPKPAPKKSGQNRQRDSRE 405


>gi|221307593|ref|NP_001138306.1| probable ATP-dependent RNA helicase DDX5 [Pan troglodytes]
 gi|156630859|sp|A5A6J2|DDX5_PANTR RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5
 gi|146741418|dbj|BAF62365.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Pan troglodytes verus]
          Length = 614

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 135/441 (30%), Positives = 220/441 (49%), Gaps = 6/441 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 154 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 213

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG +  I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 214 LERGVENCIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N  L  L                  R++     K  GF+  +   +
Sbjct: 454 SDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 513

Query: 415 SQKSHIPLKESEKISKLQQDI 435
             + +  L + +  +K Q  +
Sbjct: 514 YDRGYSSLLKRDFGAKTQNGV 534


>gi|143454263|sp|Q5N7W4|RH30_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 30
          Length = 666

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 138/380 (36%), Positives = 204/380 (53%), Gaps = 3/380 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--ML 60
           F +       + A+  +G+V+PTPIQ +  P+ L+  D+ GIAQTG+GKT S++LP  + 
Sbjct: 253 FQEANFPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLSYLLPGLVH 312

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +    +   P  LIL PTRELA Q+     K+G         + GG P   Q + L 
Sbjct: 313 VGAQPRLEQGDGPIVLILAPTRELAVQIQQESGKFGSYSRTRSTCIYGGAPKGPQIRDLR 372

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D    G   +  +  LV+DEADRMLDMGF P I+ I + +   RQT
Sbjct: 373 RGVEIVIATPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQT 432

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L +SAT   E++ ++  FLQNP ++ + +P   A       +   +++ K    L +LL 
Sbjct: 433 LYWSATWPREVESLARQFLQNPYKVIIGSPDLKANHSIQQIIEVISEHEKY-PRLSKLLS 491

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF   KK+   +   L   G+   +IHG+  Q  R  +L+ FK G   +M 
Sbjct: 492 DLMDGSRILIFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMA 551

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+  V NFD P   E+YIHRIGRTGRAG  G AFT     + K    +
Sbjct: 552 ATDVAARGLDVKDIKCVINFDFPTTLEDYIHRIGRTGRAGASGTAFTFFTLSNAKFSRNL 611

Query: 361 EKLIEKKVDWLNGDLSSLNP 380
            K++ +    +N  L S+  
Sbjct: 612 VKILREAGQVVNPALESMAK 631


>gi|56784388|dbj|BAD82427.1| putative DEAD box RNA helicase [Oryza sativa Japonica Group]
 gi|56785381|dbj|BAD82339.1| putative DEAD box RNA helicase [Oryza sativa Japonica Group]
 gi|222619731|gb|EEE55863.1| hypothetical protein OsJ_04500 [Oryza sativa Japonica Group]
          Length = 571

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 138/380 (36%), Positives = 204/380 (53%), Gaps = 3/380 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--ML 60
           F +       + A+  +G+V+PTPIQ +  P+ L+  D+ GIAQTG+GKT S++LP  + 
Sbjct: 158 FQEANFPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLSYLLPGLVH 217

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +    +   P  LIL PTRELA Q+     K+G         + GG P   Q + L 
Sbjct: 218 VGAQPRLEQGDGPIVLILAPTRELAVQIQQESGKFGSYSRTRSTCIYGGAPKGPQIRDLR 277

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D    G   +  +  LV+DEADRMLDMGF P I+ I + +   RQT
Sbjct: 278 RGVEIVIATPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQT 337

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L +SAT   E++ ++  FLQNP ++ + +P   A       +   +++ K    L +LL 
Sbjct: 338 LYWSATWPREVESLARQFLQNPYKVIIGSPDLKANHSIQQIIEVISEHEKY-PRLSKLLS 396

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF   KK+   +   L   G+   +IHG+  Q  R  +L+ FK G   +M 
Sbjct: 397 DLMDGSRILIFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMA 456

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ D+  V NFD P   E+YIHRIGRTGRAG  G AFT     + K    +
Sbjct: 457 ATDVAARGLDVKDIKCVINFDFPTTLEDYIHRIGRTGRAGASGTAFTFFTLSNAKFSRNL 516

Query: 361 EKLIEKKVDWLNGDLSSLNP 380
            K++ +    +N  L S+  
Sbjct: 517 VKILREAGQVVNPALESMAK 536


>gi|58271466|ref|XP_572889.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134115044|ref|XP_773820.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74683279|sp|Q5KBE2|RRP3_CRYNE RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|50256448|gb|EAL19173.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57229148|gb|AAW45582.1| ATP-dependent RNA helicase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 484

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 141/393 (35%), Positives = 220/393 (55%), Gaps = 7/393 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+SP++  A    G+ KP+ IQ + IP  L+  D+ G+AQTG+GKTA+F LP+L 
Sbjct: 39  TFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +     +    L+L PTRELA Q++      G    +  A+L+GG+   +Q+  L +
Sbjct: 99  TLWEN---PQPFFALVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSK 155

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR++DH  N     + +++ LV+DEADR+LD+ F P I  I  ++P  R T
Sbjct: 156 RPHIIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKILKVIPKERNT 215

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+    L  P R+EV++  ST  T+            K        L 
Sbjct: 216 YLFSATMTTKVAKLQRASLNKPVRVEVSSKYSTVSTL---LQHYLLLPLKNKDAYLLYLA 272

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++ +  + +IF     +   L   L + GF    +HG + Q  R+  L+ FK G   ++V
Sbjct: 273 NELSSSSMMIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGRSILV 332

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V N+D+P  +++Y+HR+GRT RAGR GK+ TLV + D++ +  I
Sbjct: 333 ATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEILQRI 392

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           E  I KK+   + D  ++    + +  A    A
Sbjct: 393 ESHIGKKMTSFDVDKEAVALLTDTVAKANREAA 425


>gi|217964610|ref|YP_002350288.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HCC23]
 gi|217333880|gb|ACK39674.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HCC23]
 gi|307570824|emb|CAR84003.1| ATP-dependent RNA helicase [Listeria monocytogenes L99]
          Length = 470

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 126/419 (30%), Positives = 205/419 (48%), Gaps = 21/419 (5%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +L LS ++  A+ + GY + TP+Q   IP+ L   D+   +QTG+GKTA+F +P+   +E
Sbjct: 3   NLKLSEEIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQVE 62

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
               +   P+ LI+ PTRELA QV       G+   +  A + G  PF  Q  +L +   
Sbjct: 63  WEENK---PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNH 119

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGR+LDH  +G L ++ +  LV+DE D ML MGFI  +++I S +P  RQ L FS
Sbjct: 120 IVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFS 179

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           ATM +             KR + +       + +   +      +       + +   + 
Sbjct: 180 ATMPE-------EMQDLIKRYQDDPMVIEMASEKTNPIFHVEMQTDNKEKTLKDVLITEN 232

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             + IIFCN K  V  L             IHG + Q  R + + +FK G  + ++A+D+
Sbjct: 233 PDSAIIFCNTKNQVDELTDL---LDVKASKIHGGLRQEDRFRAMDDFKSGKSRFLIATDV 289

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           A RG+D+ +V  V N+D+P   ENY+HRIGRTGRAG+ GKA + V   +   +  IE+++
Sbjct: 290 AGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEML 349

Query: 365 EKKVD--------WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           +  ++         +  +  +     +K    +     K N    K      +KK   +
Sbjct: 350 DVTIEKKRKPTVIEVKANEDAFRKKQQKRPTIKKARGEKLNKNIMKLYFNGGKKKKIRA 408


>gi|188587876|ref|YP_001920681.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498157|gb|ACD51293.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 480

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 129/389 (33%), Positives = 217/389 (55%), Gaps = 8/389 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    LS +++ A+ + GY  P+ +Q K IP +L+  D+   +QTG+GKTASF +P+  
Sbjct: 4   EFNKFELSGELLKAIDNLGYKTPSEVQEKAIPEILRNKDLVVKSQTGSGKTASFGIPLCE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +   P+ L+L PTRELA Q++++    G+   +    + G      Q +KL++
Sbjct: 64  KIDWDENK---PQVLVLAPTRELAVQISEDISNIGRYKRINCVPIFGKQSIMDQERKLKQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH +RG L ++ I   VIDEAD ML+MGFI  ++ I   +P  R TL
Sbjct: 121 KTHIVVGTPGRVLDHIDRGSLDVSKINYFVIDEADEMLNMGFIKQVEAIIRRIPKKRVTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ DE++ + +  +  P  I + + + T++ + H                   +  
Sbjct: 181 LFSATIPDEIKNLCDKHMNRPIDIAIKSQNLTSDNVSHYAYHVGYNQKLDL---LNNILI 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  ++FC  K+NV  +   L K+G+S   IHG + Q+ R+  +  F+ G  +++VA
Sbjct: 238 SEMPETSVVFCRTKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFRILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RG+DI  + HV N+D+P   E Y+HRIGRTGRAG  G A T       ++++ IE
Sbjct: 298 TDIASRGIDIEGITHVINYDIPVEKEAYVHRIGRTGRAGAKGVALTFCKDSGDRYLNEIE 357

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           + I  K++    DL S    ++  + A  
Sbjct: 358 EYIGFKLEV--KDLPSKEDIIKSTEKAME 384


>gi|168063959|ref|XP_001783934.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664528|gb|EDQ51244.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 413

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 196/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  TFDVMGLHENLLRGIYAYGFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    ++   + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 101 QLDY---QLLECQALVLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTSVREDQRILQA 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  ++I+  V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVYDMLRRNALRADSIKCFVLDEADEMLSRGFKDQIYDIFQLLPQKLQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P +I V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVKILVKRDELTLEGIKQFYVNVDREEWKLDTLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFINTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V KED + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKEDERMLQDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ L  +++ L
Sbjct: 396 RFYNTVIEELPSNVADL 412


>gi|255538978|ref|XP_002510554.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223551255|gb|EEF52741.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 783

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 146/460 (31%), Positives = 225/460 (48%), Gaps = 22/460 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ LS  ++ A    GY KPTPIQ   IPL L   D+CG A TG+GKTA+F LP L 
Sbjct: 148 SFMEINLSRPLLRACEVLGYTKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 207

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     RV+  R LIL PTRELA QV    EK  +  ++   L++GG+  + Q   L  
Sbjct: 208 RLLFRPKRVQAIRVLILTPTRELAVQVHSMVEKLAQFTDIRCCLIVGGLSTKVQESALRS 267

Query: 122 GADVLICTP-GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D+++ TP   I    N   + ++++ +L++DEADR+L++GF   I  +  L P  RQT
Sbjct: 268 MPDIVVATPGRMIDHLRNTMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 327

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+E+ ++ +  L  P R+  +  +    T+    V            +   L 
Sbjct: 328 MLFSATMTEEINELIKLSLTKPLRLSADPSTKRPATLTEEVVRIRRMREVNQEAVLLALC 387

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+      IIF   K+    L       GF    +HGN+ Q  R+  L  F++  +  ++
Sbjct: 388 SKTFTSRVIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRLDALELFRKQQVDFLI 447

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V N+  P    +Y+HR+GRT RAGR G A T V   D   + AI
Sbjct: 448 ATDVAARGLDIIGVQTVINYACPRELTSYVHRVGRTARAGREGYAVTFVTDTDRSLLKAI 507

Query: 361 EKLIEKK-----------------VDWLNGDLSS-LNPPLEKIDI--AQHNHARKNNPIP 400
            K    K                 ++ +   +++ L    E+I I  A+    +  N I 
Sbjct: 508 AKRAGSKLKSRIVAEQSIAKWSQIIEQMEDQVAAILQEEREEIAIRKAEMEATKAENMIA 567

Query: 401 QKSTGFDRRKKN-YSSQKSHIPLKESEKISKLQQDIQEND 439
            +     R K+  + ++K    + ++ K S +++   E+ 
Sbjct: 568 HRDDILSRPKRTWFVTEKEKKLVDKASKASMVKEKGFESK 607


>gi|159154994|gb|AAI54494.1| LOC556764 protein [Danio rerio]
          Length = 519

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 132/380 (34%), Positives = 204/380 (53%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F        V+  +L   + +PT IQ +  PL L   D+ GIAQTG+GKT +++LP + 
Sbjct: 96  NFHQAQFPQYVIDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIV 155

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       R   P  L+L PTRELA QV      YGK+  +    + GG P   Q + L
Sbjct: 156 HINHQPYLERGDGPICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDL 215

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 216 ERGVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 275

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+++++E+FLQ+  +I +     +A       V    +  K   L+Q + 
Sbjct: 276 TLMWSATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLME 335

Query: 240 QSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   +     IIF   KK    L   + + G+    IHG+  Q  R  +L+ F+ G   +
Sbjct: 336 EIMAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPI 395

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     +++   
Sbjct: 396 LIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQAR 455

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + +++E+    +N  L  L
Sbjct: 456 DLVRVLEEARQAINPKLLQL 475


>gi|110633776|ref|YP_673984.1| DEAD/DEAH box helicase-like [Mesorhizobium sp. BNC1]
 gi|110284760|gb|ABG62819.1| DEAD/DEAH box helicase-like protein [Chelativorans sp. BNC1]
          Length = 460

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 156/425 (36%), Positives = 241/425 (56%), Gaps = 13/425 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+S  ++ A   AG  +P PIQ + IP  L   D+ G+AQTG+GKTA+F LP+L+ 
Sbjct: 28  FADLGISETLLKAAAAAGMTEPKPIQKEAIPPFLAGSDILGVAQTGSGKTAAFSLPILSK 87

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R R  R LIL PTRELA Q+     +  K  +++ AL++GG+   +Q K++ 
Sbjct: 88  IIGLGTKRRPRTARALILVPTRELAVQIEKVVRELAKGAHVSTALVLGGVSRHSQIKRMA 147

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR+ D    G ++++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 148 QGVDVLIATPGRLTDLVRDGAVVLSETTWLVLDEADRMLDMGFINDVRRIAKATHPARQT 207

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E++ ++ + L+ P RIEV+   +TA  I     +     +K+   L   + 
Sbjct: 208 ALFSATMPREIEALASSLLKEPVRIEVSPQGTTAAEI---RQSVIMARTKQKRKLLSEML 264

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + M   IIF   K     +   L+  GF    IHGN  Q +R + L++F+EG ++++V
Sbjct: 265 ADEKMAQVIIFSRTKHGADRVTKDLQHDGFQAAVIHGNKSQNARQRALNDFREGAVRILV 324

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+P + HV NFD+P+ AE+Y+HRIGRTGR G  G+A TL    ++  +  +
Sbjct: 325 ATDIAARGIDVPGISHVVNFDLPDEAESYVHRIGRTGRNGAEGEAITLCDPGEVSKLRQV 384

Query: 361 EKLIEKKVDW---LNGDLSSLNPP-----LEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           E++I  ++     + G   S   P     ++ +        ++N    +      R ++N
Sbjct: 385 ERVIRNRLPIARDITGQPDSAPKPRVPSAIQPLAEGVEGKPQRNAAPKRSGAKPPRHRRN 444

Query: 413 YSSQK 417
              QK
Sbjct: 445 RRGQK 449


>gi|324326484|gb|ADY21744.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 436

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 138/386 (35%), Positives = 222/386 (57%), Gaps = 11/386 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ + IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 3   NFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 63  KIDPECSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T  TIE           +      + + 
Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQ---RVIETTDRAKPDALRFVM 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKID 386
           EK +   +     +     P ++++D
Sbjct: 357 EKTLGAPLKREIIE----QPKIKRVD 378


>gi|294911908|ref|XP_002778095.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239886216|gb|EER09890.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 463

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 130/373 (34%), Positives = 197/373 (52%), Gaps = 4/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LG+ P++  A     +  P+ IQ +TIP  LQ  D+  +A+TG+GKT +F +P++
Sbjct: 29  VTFESLGVCPELCKACDVLQWEHPSKIQEETIPYALQGRDLIALAETGSGKTGAFAIPII 88

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L       +     +L PTREL  Q+   FE  G + NLT A ++GG+    Q   L 
Sbjct: 89  QKLLDAAPHRKSTWACVLAPTRELCVQIGQQFEGLGASINLTTATIVGGLDMVTQAMALS 148

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   +++ +PGR++DH  N     +  I+ LV+DEADR+L M F   +  I    P  RQ
Sbjct: 149 KKPHIIVASPGRLVDHLENTKGFHLKTIKFLVMDEADRLLGMDFEDALNKIVQSCPRDRQ 208

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT+++ ++    L  P + EV      A+ +   ++       K        L
Sbjct: 209 TFLFSATMTNKVSQLQRASLTRPVKCEVARKFDVAKGLVQNYMFVPH---KHKHAYLAAL 265

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +   +   +IF +   N   +  +L   G +   +HG + Q  R+  L+ F+ GT  ++
Sbjct: 266 LAHFKLSTVMIFVDTCLNAQRMATTLRHLGHNCVCLHGKMTQTHRLGALNQFRAGTRSVL 325

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V NFDVP   E YIHR+GRT RAGR G++ TLV + DI+    
Sbjct: 326 VATDVAARGLDIPSVDVVINFDVPKNPEEYIHRVGRTARAGRTGRSVTLVTQYDIEPFQR 385

Query: 360 IEKLIEKKVDWLN 372
           IE    KK++   
Sbjct: 386 IENKQGKKMEEFP 398


>gi|187935259|ref|YP_001885538.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723412|gb|ACD24633.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
           Eklund 17B]
          Length = 480

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 210/371 (56%), Gaps = 6/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    LS +++ A+ + GY  P+ +Q K IP +L+  D+   +QTG+GKTASF +P+  
Sbjct: 4   EFNKFELSGELLKAIDNLGYKTPSEVQEKAIPEILRNKDLVVKSQTGSGKTASFGIPLCE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +   P+ L+L PTRELA Q++++    G+   +    + G      Q +KL++
Sbjct: 64  KIDWDENK---PQVLVLAPTRELAVQISEDISNIGRYKRINCVPIFGKQSIMDQERKLKQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH +RG L ++     VIDEAD ML+MGFI  ++ I   +P  R TL
Sbjct: 121 KTHIVVGTPGRVLDHIDRGSLDVSKTNYFVIDEADEMLNMGFIKQVEAIIRRIPKKRVTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ +E++ + +  +  P  I + + + T++ + H                   +  
Sbjct: 181 LFSATIPEEIKNLCDKHMNRPIDIAIKSQNLTSDNVSHYAYHVGYNQKLDL---LNNILI 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  ++FC  K+NV  +   L K+G+S   IHG + Q+ R+  +  F+ G  +++VA
Sbjct: 238 SEMPETSVVFCRTKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFRILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RG+DI  + HV N+D+P   E Y+HRIGRTGRAG  G A T       ++++ IE
Sbjct: 298 TDIASRGIDIEGITHVINYDIPVEKEAYVHRIGRTGRAGAKGVALTFCKDSGDRYLNEIE 357

Query: 362 KLIEKKVDWLN 372
           + I  K++  N
Sbjct: 358 EYIGFKLEVKN 368


>gi|317477978|ref|ZP_07937161.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
 gi|316905892|gb|EFV27663.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
          Length = 650

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 152/476 (31%), Positives = 248/476 (52%), Gaps = 33/476 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+SP++  A+ + GY +P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++
Sbjct: 3   TFEELGVSPEIRRAIEEMGYEQPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             +       R+P++LIL PTREL  Q+A +   Y K  +    L + G    E+Q + L
Sbjct: 63  QKINVNN---RIPQSLILCPTRELCLQIAGDLNDYSKYTDGLRVLPVYGGSSIESQIRAL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD   R  + +  I+ +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KRGVHIIVATPGRLLDLMERKTVSLATIQNVVMDEADEMLNMGFTDSINAILADVPQERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+ +L++ K I +   +   E+  +     +  ++K      + +
Sbjct: 180 TLLFSATMSPEIARISKKYLRDAKEITIGRKN---ESTSNVKHVAFCVHAKDKYAALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+
Sbjct: 237 VDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRE 356

Query: 360 IEKLIEKKV---------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK-------- 402
           IE++I KK                L  +   LEK+ + +   A     I +K        
Sbjct: 357 IERIIGKKFIAGEMPTGKQICEKQLLKVIDDLEKVKVNEEEIADFMTDIYRKLDWLSKED 416

Query: 403 ------STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAF 452
                 S  F+R    Y  +        SE+ ++  +    ND  S   R   P F
Sbjct: 417 LIKRMVSHEFNRFLDYYRGRDEIETATGSERGARSGERGDRNDRRS--SRKAEPGF 470


>gi|289422689|ref|ZP_06424529.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
 gi|289156868|gb|EFD05493.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
          Length = 547

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 144/384 (37%), Positives = 224/384 (58%), Gaps = 9/384 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L +  ++  A+ D GY +P+PIQ K IP+VL+ +DV G AQTGTGKTA+F +P+L 
Sbjct: 5   NFNELAVKEEITRAIADLGYEQPSPIQAKAIPVVLEGYDVIGQAQTGTGKTAAFSIPLLE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++    R++     +L PTRELA QV++   K  K  +    L I  G P + Q K L+
Sbjct: 65  KIDPSDKRLQAI---VLCPTRELAIQVSEEVRKLAKYLHGVKTLPIYGGQPIDRQIKALK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  V+I TPGR++DH NR  L  + ++++V+DEAD MLDMGF   I+ I S  P  RQT
Sbjct: 122 GGVQVIIGTPGRVIDHINRKTLKPSTVKMVVMDEADEMLDMGFREDIETILSSTPQERQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   + ++++ + + P  I+V     T   I+  ++ T          +   L 
Sbjct: 182 SLFSATMPKAILELTQKYQKEPVHIKVVRKELTVNNIKQFYIETRKSNK---LEVLTRLI 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  ++F N KK    L   L+ +G+   ++HG++ Q  R  ++  F+ GTI ++V
Sbjct: 239 DVYNPKLTVVFTNTKKGADELVSDLQARGYGADSLHGDLKQVQRDIVMDKFRHGTIDILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV  V N+++P   E Y+HRIGRTGRAGR G AF+ V   +++ +  I
Sbjct: 299 ATDVAARGIDVDDVECVINYELPQDEEYYVHRIGRTGRAGRDGIAFSFVFGREMRKLKDI 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E+  + KV  +   + ++N   +K
Sbjct: 359 ERYTKSKV--MKHSIPTVNDVEQK 380


>gi|223649022|gb|ACN11269.1| Probable ATP-dependent RNA helicase DDX5 [Salmo salar]
          Length = 614

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 137/411 (33%), Positives = 212/411 (51%), Gaps = 3/411 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      V+  +  AG+ +PTPIQ +  PL L   D+ GIAQTG+GKT S++LP +
Sbjct: 94  MKFHEASFPTYVMDVINKAGWSEPTPIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAI 153

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +YG+   L    + GG P   Q + 
Sbjct: 154 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYGRASRLKSVCVYGGAPKGPQLRD 213

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RG ++ I TPGR++D    GK  M     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 214 LDRGVEICIATPGRLIDFLEAGKTNMRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQ 237
           QTL++SAT   E+++++E+FL++  +I V     +A       V       K+   L   
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYVQINVGALQLSANHNILQIVDVCNDGEKEDKLLRLL 333

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                +     IIF   K+    +   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 334 EEIMSEKENKTIIFTETKRRCDEITRRMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAP 393

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V NFD PN +E+YIHRIGRT R+ + G A+T     +++  
Sbjct: 394 ILIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQA 453

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
             +  ++ +    +N  L  +          +     +++   + S+G  R
Sbjct: 454 SDLVAVLREANQAINPKLLQMADRGGHSRGGRGGSGFRDDRRDRYSSGGRR 504


>gi|152993022|ref|YP_001358743.1| DEAD-box ATP dependent DNA helicase [Sulfurovum sp. NBC37-1]
 gi|151424883|dbj|BAF72386.1| ATP-dependent RNA helicase, DEAD-box family [Sulfurovum sp.
           NBC37-1]
          Length = 460

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 150/402 (37%), Positives = 229/402 (56%), Gaps = 13/402 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F        +   V  AG+ +P+PIQ   IP++    D+ G A TGTGKTA+F LPM+
Sbjct: 1   MNFNQFNFHRDLAKGVKIAGFREPSPIQKMAIPIIEGGKDLVGQAHTGTGKTAAFGLPMM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L KG       R L++ PTRELA QVAD     G+   +    + GG+ +  Q   + 
Sbjct: 61  DKLAKGEIE----RALVITPTRELATQVADELYHLGRFAGIRTLTVYGGVGYGRQIALIH 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+ D + +GK+ + N EI+V+DEAD MLDMGF+  I+ I   +P  RQT
Sbjct: 117 KGVQIVVATPGRLKDLYRKGKIDVLNPEIVVLDEADEMLDMGFLDEIKEIFEYIPQNRQT 176

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + +++++ + L  P+ I V     T   I         +  +  A+++ L  
Sbjct: 177 LLFSATMPEPIKELANHILYQPEFISVVGDEETTNNIIEQRYYVINENQRDEAIVKLLET 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIFC  K+ V  L   L+ QGF+   +HG+++Q+ R  ++  ++ G  ++MV
Sbjct: 237 EDTNKC--IIFCRMKREVDRLTEYLQAQGFNASGLHGDLEQQDREVVIKAYRRGETKIMV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HVFN+ +P   ++Y+HRIGRTGRAG+ G+A TLV  E+ + +  I
Sbjct: 295 ATDVAARGLDVKDVTHVFNYHIPFDPQSYVHRIGRTGRAGKSGQAITLVTTEEFRELQRI 354

Query: 361 EKLIEKKVDW--LNG----DLSSLNPPLEKI-DIAQHNHARK 395
           +K +   +    L G    D SSL    E+I D+  H  A++
Sbjct: 355 QKEVGADMHLATLQGGEGLDESSLEYLAEQIRDMPVHKEAKR 396


>gi|148242659|ref|YP_001227816.1| superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
 gi|147850969|emb|CAK28463.1| Superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
          Length = 560

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 139/390 (35%), Positives = 216/390 (55%), Gaps = 8/390 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  GL   ++ A+   GY +P+PIQ   IP ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 17  FAGFGLPDSLLEALTKCGYEQPSPIQAAAIPELMLGRDLLGQAQTGTGKTAAFALPLLAR 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKLER 121
           +       R P+ L+L PTRELA QV++ F++Y         L + G   F  Q  KL R
Sbjct: 77  I---NLEARHPQVLVLAPTRELAIQVSEAFQRYASCTPGLHVLPLYGGSDFRDQIHKLRR 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  +G L ++ +E LV+DEAD ML MGFI  ++ +   +P  RQ +
Sbjct: 134 GVHVVVGTPGRVMDHMRQGTLNVSQLETLVLDEADEMLRMGFIDDVKWVLEQLPSERQVV 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++S+  LQNP  + + T  + A  I    +    Q           +  
Sbjct: 194 LFSATMPPEIKRISQQHLQNPAEVIIRTQKADASRIRQRHILLPHQQK---LSALLRVLE 250

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIF   K   V +  +LE +G +   ++G++ Q  R + +   K+G I ++VA
Sbjct: 251 AHGPGGVIIFARTKAVTVTVAEALEAEGIACSVLNGDVPQSLRERTIERLKQGRIDVLVA 310

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N+D P  +E Y+HRIGRTGRAGR G A   ++  + + + ++E
Sbjct: 311 TDVAARGLDVDRIGLVVNYDAPFDSEAYVHRIGRTGRAGRQGDAILFLSYRERRLLHSLE 370

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
           + +   +D ++   S      +++D  Q  
Sbjct: 371 RAVGSSIDAMDVP-SDAEINQQRLDNLQQQ 399


>gi|78777961|ref|YP_394276.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251]
 gi|78498501|gb|ABB45041.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 540

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 143/395 (36%), Positives = 214/395 (54%), Gaps = 11/395 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++ +V DAG+  P+PIQ   IP +L   D+ G A TGTGKTA+F LP L
Sbjct: 14  ITFDDLGLKKEILRSVKDAGFTVPSPIQAAAIPFILAGRDIVGQAHTGTGKTAAFGLPAL 73

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +            L++ PTRELA QV+D   KYG+N       + GG  +  Q   ++
Sbjct: 74  NNINPN----DGVGILVITPTRELATQVSDELFKYGRNIGARTVTVYGGSSYNRQIDLIQ 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR+LD   +  L      I+V+DEAD MLDMGF+  I  I S +P  RQT
Sbjct: 130 RGASVVVATPGRLLDILKKNLLKDFAPSIVVLDEADEMLDMGFLDDINEIFSYLPSNRQT 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++ ++E  L NP+ I +    +T   I   +            +     +
Sbjct: 190 LLFSATMPKPIKLLAERILDNPEFISITKGETTNTDINQEYYVIEESERDDAIIRLMDAE 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +    +  I+FC  K  V  L + L   G+    +HG+++QR R  ++  FK   ++++V
Sbjct: 250 AC---QKSIVFCRTKSEVDRLSNVLSSAGYLANGLHGDMEQRQRETVIKGFKNNGVKVLV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ + ++ HVFN+ +P   E+Y+HRIGRTGRAG  GKA TL+   + K +  I
Sbjct: 307 ATDVAARGIHVDNISHVFNYHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRI 366

Query: 361 EKLIEKKVDWL----NGDLSSLNPPLEKIDIAQHN 391
           +  +   +         DL ++N       I +HN
Sbjct: 367 KTKVGTTMTHAFVPSKNDLRAINLKSIATSIEEHN 401


>gi|284006573|emb|CBA71834.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
          Length = 423

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 134/418 (32%), Positives = 215/418 (51%), Gaps = 9/418 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L PKV+ A+   G+   TPIQ  T+P  ++  DV G AQTGTGKT +F+     
Sbjct: 5   KFIDFALHPKVIEALNKNGFHNCTPIQASTLPFTVEGRDVAGQAQTGTGKTLAFLTSTFH 64

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + ++      L + L  GG  ++ Q  
Sbjct: 65  YLLTHPTNSERQVNQPRALIMAPTRELAVQIYTDAKELAAITGLKMGLAYGGDGYDEQLH 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G D+LI T GR++D+  +G + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 125 VLQSGVDILIGTTGRLIDYAKQGHIHLGRIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q  +   +       +T        +   +++   L Q
Sbjct: 185 AQRLNLLFSATLSYRVQELAFEQMNQPEYIEVEPQQ-KTGHRIKEELFYPSNEEKMRLLQ 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++  +  IIF N K    ++   L   G  V  + G++ Q+ R++IL  F +G + 
Sbjct: 244 TLIEEEWPERCIIFANTKHRCEDIWAHLAADGHRVGLLTGDVAQKKRLRILEQFTQGHLD 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 304 ILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYSLNL 363

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            AIE+ I+ ++     +    L  L  P  +         R N+   +++   + RK+
Sbjct: 364 PAIEEYIQHQIPVSKYNSEALLQDLPTPKPRRRPRASGTRRNNSSQSRQNNSRNNRKR 421


>gi|313234298|emb|CBY10365.1| unnamed protein product [Oikopleura dioica]
          Length = 408

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 130/397 (32%), Positives = 216/397 (54%), Gaps = 13/397 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  +   ++  + DAGY  PTPIQ + IP+ +Q  D+ G+A+TG+GKT +F++P+L  
Sbjct: 4   WKESIIPENILKIISDAGYKDPTPIQRQAIPIGMQNRDIIGVAETGSGKTLAFLVPLLVW 63

Query: 63  LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           ++     +R+      P  +IL PTRELA Q+ +   K+G    +    +IGG   E Q 
Sbjct: 64  IDSLPRNIRVEDADKGPYAMILAPTRELATQIEEEVVKFGSPLGIRSVAVIGGASREEQG 123

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            KL  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I S +PF
Sbjct: 124 LKLRMGCEIVIATPGRLIDVIENRYLVLSQCTYIVLDEADRMIDMGFEPEVQKILSHMPF 183

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +  ++F+ATM   ++++++ F++ P  + + +    A+ I             K  +  
Sbjct: 184 RQT-VMFTATMPPPVERIAKTFMRRPCTVYIGSVGKAADRIVQKAFFVPDGQKAKKMISI 242

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
              ++       I+F NQKK    L   LEK G+   ++HG   Q  R   L+  K G  
Sbjct: 243 LEDENCLEQGPVIVFVNQKKGCDVLARQLEKYGYDAISLHGGKGQDQRDYALACIKNGEK 302

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+A RG+DI DV  + N+D+    E+Y HRIGRTGRAG+ GKA T + ++D  +
Sbjct: 303 NVLVATDVAGRGIDIKDVSLILNYDMAKNIEDYTHRIGRTGRAGKSGKAVTFLTQDDSHN 362

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
              + +++      +  + SS  P L++   AQ    
Sbjct: 363 FYDLRQML------IESECSSCPPELDRHPEAQQKPG 393


>gi|310766260|gb|ADP11210.1| ATP-dependent RNA helicase DeaD [Erwinia sp. Ejp617]
          Length = 638

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 134/378 (35%), Positives = 227/378 (60%), Gaps = 8/378 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGL+  ++ ++   GYVKP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFAELGLNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLH 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     V+ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NIDPT---VKAPQILVLAPTRELAVQVAEAVTDFSKHMRGLNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + ++++++ F+++P+ + + +  +T   I   +   Y + +       +   
Sbjct: 184 ALFSATMPEAIRRITKRFMKDPQEVRIQSSLTTRPDISQSYWTAYGRKTDALTRFLE--- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 -AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 359

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 360 ERTMKLTIPEVELPNAEL 377


>gi|259907048|ref|YP_002647404.1| ATP-dependent RNA helicase DeaD [Erwinia pyrifoliae Ep1/96]
 gi|224962670|emb|CAX54125.1| Cold-shock DEAD-box protein A [Erwinia pyrifoliae Ep1/96]
 gi|283476844|emb|CAY72682.1| Cold-shock DEAD box protein A [Erwinia pyrifoliae DSM 12163]
          Length = 638

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 134/378 (35%), Positives = 227/378 (60%), Gaps = 8/378 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGL+  ++ ++   GYVKP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFAELGLNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLH 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     V+ P+ L+L PTRELA QVA+    + K+      + +  G  ++ Q + L 
Sbjct: 67  NIDPT---VKAPQILVLAPTRELAVQVAEAVTDFSKHMRGLNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + ++++++ F+++P+ + + +  +T   I   +   Y + +       +   
Sbjct: 184 ALFSATMPEAIRRITKRFMKDPQEVRIQSSLTTRPDISQSYWTAYGRKTDALTRFLE--- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 -AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 359

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 360 ERTMKLTIPEVELPNAEL 377


>gi|313683287|ref|YP_004061025.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313156147|gb|ADR34825.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 526

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 145/401 (36%), Positives = 211/401 (52%), Gaps = 16/401 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL  +++ ++  AG+  P+PIQ   IP++++  DV G A TGTGKTA+F LP L 
Sbjct: 15  TFEAFGLRKEIMQSINFAGFKTPSPIQQMVIPVIMEGRDVVGQAHTGTGKTAAFGLPALN 74

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +           TLI+ PTRELA QV+D   KYGK+  +    + GG  +  Q   +ER
Sbjct: 75  KMHL----KGGIETLIITPTRELANQVSDEIFKYGKHLGVRTVTIYGGSSYNRQMDLIER 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V+I TPGR+LD  +R  L       +++DEAD MLDMGF+  I  I + +P  RQTL
Sbjct: 131 GAQVIIATPGRLLDMLSRNMLKGFTPSTVILDEADEMLDMGFLDDINEIFTYLPTERQTL 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +++++E  L NP    +    +T   I   +            +       
Sbjct: 191 LFSATMPAPIKQLAERILVNPFFASITKSETTNTDITQQYYVIEESERDDAIIRL---MD 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  K  ++FC  KK V  L + L   G+    +HG+++QR R  ++   K   + +++A
Sbjct: 248 SEDAKKTVVFCRTKKEVDRLSNVLSAAGYMAKGLHGDMEQRQRESVIKGLKTDAVDVLIA 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGL I DV HVFN+ +P   E+Y+HRIGRTGRAG+ G A TLV   + K +  I 
Sbjct: 308 TDVAARGLHIDDVTHVFNYHIPFDPESYVHRIGRTGRAGKKGVAITLVTPLEFKELQRIR 367

Query: 362 ---------KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
                      I  K+D     +S L   +EK  +    H 
Sbjct: 368 AKVGTTMEHAYIPSKLDVKEAQVSRLVREIEKQHVYDEAHK 408


>gi|85118552|ref|XP_965469.1| hypothetical protein NCU02696 [Neurospora crassa OR74A]
 gi|74662807|sp|Q7SH33|PRP5_NEUCR RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp-5
 gi|28927278|gb|EAA36233.1| hypothetical protein NCU02696 [Neurospora crassa OR74A]
 gi|38567223|emb|CAE76515.1| related to RNA helicase [Neurospora crassa]
          Length = 1194

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 132/459 (28%), Positives = 219/459 (47%), Gaps = 9/459 (1%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
             ++  GL+  ++  +   G+ KPTPIQ++ +P+++   DV G+A+TG+GKT +F LPM  
Sbjct: 562  KWSQCGLTRPILDTIESLGFEKPTPIQMQALPVIMSGRDVIGVAKTGSGKTMAFALPMLR 621

Query: 60   LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                +           LI+ PTREL  Q+  + + + K   L V    GG   + Q  +L
Sbjct: 622  HVKDQDPVTGDDGAIALIMTPTRELCTQIYSDLQPFAKALKLRVVAAYGGNAIKDQIAEL 681

Query: 120  ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +RGA++++ TPGR++D           +     LV+DEADRM DMGF P +  I + V  
Sbjct: 682  KRGAEIIVATPGRLIDLLAANGGRVTNLKRATYLVLDEADRMFDMGFEPQVMKIFNNVRP 741

Query: 177  TRQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT+LFSATM   +     +      +           E  +   V    +   +   L
Sbjct: 742  DRQTILFSATMPRIIDALTKKVLRDPVEITVGGRSVVAPEITQIVEVMDEGKKFNRLLEL 801

Query: 236  QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
               L + D     +IF  +++   +L   L ++G+   +IHG  DQ  R   +S+FK+G 
Sbjct: 802  LGELYADDDDVRSLIFVERQEKADDLLRELLRRGYGCMSIHGGKDQEDRNSTISDFKKGV 861

Query: 296  IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
              +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + +E   
Sbjct: 862  CPILIATSIAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQEN 921

Query: 356  HIDAIEKLIEKKVDWLNGDLSSLNPP-LEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                I K +E+    +   L+ +     EK+   +   A        +    DR      
Sbjct: 922  CASGIAKALEQSGQPVPDRLNEMRKAWKEKVKAGKAKDASGFGGKGLEKLDKDREAARMR 981

Query: 415  SQKSHIPLKESEKISK--LQQDIQENDADSLGFRGNMPA 451
             +K+H    E + + +    +D ++ D   +  +  + A
Sbjct: 982  ERKTHKAEGEEDDVKEDAPAEDGEKKDKTKVAIQSAVSA 1020


>gi|89891113|ref|ZP_01202621.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Flavobacteria
           bacterium BBFL7]
 gi|89516757|gb|EAS19416.1| ATP-dependent RNA  helicase, DEAD/DEAH box family [Flavobacteria
           bacterium BBFL7]
          Length = 449

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 139/449 (30%), Positives = 222/449 (49%), Gaps = 22/449 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L L   +   + D G+   TPIQ +  P++L   D+ GIAQTGTGKT  ++LP+L 
Sbjct: 3   NFEELNLGTPLRNGLNDLGFTTMTPIQEQAFPVILSGRDMIGIAQTGTGKTLGYMLPLLH 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+        PR L+L PTREL  QV +  E Y    N+ V  + GG     Q K +  
Sbjct: 63  ELKYA--ETLDPRILVLVPTRELVVQVVEQIEAYAAYINIRVLGVYGGTNINTQKKAVTD 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR+ D      + +   + +VIDE D MLD+GF   + NI   +P  RQ +
Sbjct: 121 GVDIIVATPGRLYDLIVAQTVRLKYCKKIVIDEVDVMLDLGFRFQLTNIFDHLPKKRQNI 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATMTD+++   +++  NP+++ V    +  E IE         Y+K   L+  L   
Sbjct: 181 MFSATMTDQIEDFIKSYFFNPEKVSVAVSGTRLENIEQTCYPVENFYTKANLLMDLLTDV 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++  K  +   N+K       + LE+ G  +  IH N  Q  R++ +  F  G  ++++A
Sbjct: 241 EEFKKVLVFVGNKKSADRLQDYMLERYGDEIAVIHSNKTQNYRLRSIELFDTGERRILIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  + HV N DVP+  ENY+HRIGR+GRA   GK      +++ +   AIE
Sbjct: 301 TDVMARGLDLEKISHVINIDVPSFPENYMHRIGRSGRAEEKGKTILFYTEKEKEDKIAIE 360

Query: 362 KLIEKKVDWLN----GDLSSLNPPLEKIDIAQ----------------HNHARKNNPIPQ 401
            L++ K+  +      ++S+   P EK  + +                H  + KN  +  
Sbjct: 361 ALMDYKIPEIPFPEEVEVSNQKTPEEKPVVRELFNPHKVIEEERGASFHEKSEKNKKVNL 420

Query: 402 KSTGFDRRKKNYSSQKSHIPLKESEKISK 430
             +      K Y   K+      + +  K
Sbjct: 421 GGSYRREIAKKYKKPKTRGDKNANRRRKK 449


>gi|60417515|emb|CAI59960.1| ATP-dependent RNA helicase (DEAD/DEAH box family) [Listeria
           ivanovii]
          Length = 474

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 133/477 (27%), Positives = 225/477 (47%), Gaps = 30/477 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+  +L LS ++  A+ + GY + TP+Q + IP+ L   D+   +QTG+GKTA+F +P+ 
Sbjct: 5   MN--NLNLSEEIKRAINELGYKEATPVQKEVIPVALTGKDIVAKSQTGSGKTAAFAIPIA 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +   P+ LI+ PTRELA QV       G+   +  A + G  PF  Q  +L 
Sbjct: 63  EQVIWEENK---PQALIIVPTRELAMQVKAECTNIGRFKRIKAAAIYGQSPFAKQKLELS 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+LDH  +G L ++ +  LV+DE D ML MGFI  +++I   +P  RQ 
Sbjct: 120 QKNHIVVGTPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLSMGFIDQVEDILQFLPKKRQN 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM +             KR + +         +   +      ++      Q + 
Sbjct: 180 LFFSATMPE-------EMQDLIKRYQDDPIVIEMAAEKTNPITHIEMQTENKEKTLQDVL 232

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +   + IIFCN K  V  L         +   IHG + Q  R + + +FK G  + ++
Sbjct: 233 ITENPDSAIIFCNTKNQVDELSDL---LQVNTAKIHGGLRQEERFRAMDDFKSGKSRFLI 289

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A RG+D+ +V  V N+D+P   ENY+HRIGRTGRAG  GKA + V   +   +  +
Sbjct: 290 ATDVAGRGIDVENVTLVINYDLPIEKENYVHRIGRTGRAGNSGKAISFVKTNENPLLRDM 349

Query: 361 EKLIEKKVD--------WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK---STGFDRR 409
           E +++  ++         +     +     +K    +     K N    K   + G  ++
Sbjct: 350 EDMLKITIEKKRKPTIIEVKASEEAFRKKQQKRPTIKKARGEKLNKNIMKLYFNGGKKKK 409

Query: 410 KK--NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            +  ++    S +    SE I  +   I+++ +      G  PA +      K+  +
Sbjct: 410 IRAVDFVGTISKLEGITSEDIGII--TIEDHVSFVEILNGKGPAVLEMMRSRKVKGR 464


>gi|162460883|ref|NP_001105372.1| eukaryotic initiation factor 4A [Zea mays]
 gi|2500522|sp|Q41741|IF4A_MAIZE RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A
 gi|603190|gb|AAA82736.1| translation initiation factor eIF-4A [Zea mays]
          Length = 410

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 195/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 38  SFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 97

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G       + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 98  QLDYGLVE---CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS 154

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 155 GVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVG 214

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 215 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNIDKEDWKLDTLCDL--YE 272

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 273 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 332

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  ++
Sbjct: 333 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERIVFDVQ 392

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     V+ L  +++ L
Sbjct: 393 RFYNVTVEELPANVADL 409


>gi|312959777|ref|ZP_07774293.1| RNA-binding:Dead/DEAH box helicase [Pseudomonas fluorescens WH6]
 gi|311285943|gb|EFQ64508.1| RNA-binding:Dead/DEAH box helicase [Pseudomonas fluorescens WH6]
          Length = 557

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 145/386 (37%), Positives = 234/386 (60%), Gaps = 9/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA   L+P ++ AV+  GY +P+ IQ ++IP+++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAFALPILHC 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++  +     P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPAKRE---PQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + +++ +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPTRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++P+ +++ T + T   IE   +  +A       L       
Sbjct: 185 LFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL---E 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKI 385
           ++  +KV    L    + L+  ++K+
Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKL 387


>gi|300120116|emb|CBK19670.2| unnamed protein product [Blastocystis hominis]
          Length = 607

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 121/433 (27%), Positives = 212/433 (48%), Gaps = 11/433 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  GL+ K++  +   GY KP PIQ + IP V+   +V  +A+TG+GKT +++LP+  
Sbjct: 47  TWAQCGLTEKILHVINKLGYAKPFPIQSQAIPTVMSGREVIAVAKTGSGKTLAYLLPLFR 106

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P  LIL P REL AQ+ +   K+ K   + +  + GG     Q   L
Sbjct: 107 HILDQPPVVEGDGPIGLILAPARELVAQIYNEASKFCKVLGIRITAVYGGTSMTEQINSL 166

Query: 120 ERGADVLICTPGRIL---DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RG+++++CTPGR++          + +  +  +V+DEADRMLDMGF P I  I      
Sbjct: 167 KRGSEIIVCTPGRMIDILCLNQGRLVGLRRVSYVVLDEADRMLDMGFEPQITTILQNARP 226

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ ++FSAT    ++ ++   L+ P  I V   +  A  +            +K   L 
Sbjct: 227 DRQLVMFSATFPTHVENLARKMLKKPVMIVVGGRTEVAAEVSQTI--EVRTKEQKFPRLL 284

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q+L         ++F ++++    L   L + G+    +HG +DQ+ R + + +FK    
Sbjct: 285 QILGEWYDRGLILVFVDKQQKADYLFRDLLRSGYYSYILHGGMDQQDRDQTIVDFKNKVR 344

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+ +A RG+ + D+  V N+D PN  E+Y+HR+GRTGRAG  G A T +  ++  +
Sbjct: 345 TILIATSVAGRGIHVNDLVLVINYDCPNHLEDYVHRVGRTGRAGNKGTAITFITPQEDMY 404

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              + K +++    +  +L  L+   E   +   N   + +    K   FD      + +
Sbjct: 405 ASDMVKALKQSHTPVPAELQKLSDAFEA-KVKAGNAKHRLSGYHTKGFKFDE---TEAGE 460

Query: 417 KSHIPLKESEKIS 429
           K  I   +  ++ 
Sbjct: 461 KEVIKSMQKRQVE 473


>gi|229589245|ref|YP_002871364.1| cold-shock dead-box protein A [Pseudomonas fluorescens SBW25]
 gi|229361111|emb|CAY47974.1| cold-shock dead-box protein A [Pseudomonas fluorescens SBW25]
          Length = 557

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 145/386 (37%), Positives = 234/386 (60%), Gaps = 9/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA   L+P ++ AV+  GY +P+ IQ ++IP+++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAFALPILHC 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++  +     P+ LIL PTRELA QVA  FE Y K    +TV  + GG P   Q K +  
Sbjct: 68  IDPAKRE---PQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + +++ +  LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPTRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L++P+ +++ T + T   IE   +  +A       L       
Sbjct: 185 LFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL---E 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I+F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKI 385
           ++  +KV    L    + L+  ++K+
Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKL 387


>gi|94266993|ref|ZP_01290640.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93452307|gb|EAT02944.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 509

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 154/452 (34%), Positives = 243/452 (53%), Gaps = 13/452 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L+P V  AV + GY  PTPIQ   I  +L   D+ G AQTGTGKTA+F LP+L
Sbjct: 7   MHFSQLPLAPAVSQAVAEIGYETPTPIQAAAIGPLLAGRDLLGQAQTGTGKTAAFALPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + L+  R   + P+ L+L PTRELA QVAD  + Y ++      L +  G     Q + L
Sbjct: 67  SRLDTSR---KYPQLLVLAPTRELALQVADEIQAYSRHLPGFQVLPLYGGQNMAQQLRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG   ++ TPGRI DH  RG L ++ +  +VIDEAD ML MGF+  ++ I +  P  RQ
Sbjct: 124 QRGVQAVVGTPGRIQDHLRRGTLKLDRLTAVVIDEADEMLKMGFVDEVEKILAQTPPQRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATMT E+ +++   L++P+ I + T ++T ETI   +                 +
Sbjct: 184 VALFSATMTQEIMRIARRHLKDPEEIRLKTRTTTVETISQHYWLVQGLQK---LDALTRI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              + ++  +IF   K   V L   L  +GF+  A++G++ Q  R K +   K+GT+ ++
Sbjct: 241 LEAEAVEAMLIFVRTKVATVELAEKLAARGFASAALNGDMTQGLREKTVEQLKDGTLDIV 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   VA  +++ + A
Sbjct: 301 VATDVAARGLDVQRISHVVNYDIPYDTESYVHRIGRTGRAGRQGQAIIFVAPREMRMLHA 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IEK   +++  L        P   +++  + +  ++      +  G +  ++  +   + 
Sbjct: 361 IEKATRQQIARLQ------LPSRREVNQRRIDQFKEKIIAASRQPGLEFFEELIAQATAE 414

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
             +   +  + L   +Q+         G  PA
Sbjct: 415 AEIDSQQLAAGLAYLLQQARPLLPEEGGPPPA 446


>gi|94267131|ref|ZP_01290765.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93452155|gb|EAT02824.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 509

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 154/452 (34%), Positives = 243/452 (53%), Gaps = 13/452 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L+P V  AV + GY  PTPIQ   I  +L   D+ G AQTGTGKTA+F LP+L
Sbjct: 7   MHFSQLPLAPAVSQAVAEIGYETPTPIQAAAIGPLLAGRDLLGQAQTGTGKTAAFALPLL 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + L+  R   + P+ L+L PTRELA QVAD  + Y ++      L +  G     Q + L
Sbjct: 67  SRLDTSR---KYPQLLVLAPTRELALQVADEIQAYSRHLPGFQVLPLYGGQNMAQQLRAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG   ++ TPGRI DH  RG L ++ +  +VIDEAD ML MGF+  ++ I +  P  RQ
Sbjct: 124 QRGVQAVVGTPGRIQDHLRRGTLKLDRLTAVVIDEADEMLKMGFVDEVEKILAQTPPQRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATMT E+ +++   L++P+ I + T ++T ETI   +                 +
Sbjct: 184 VALFSATMTQEIMRIARRHLKDPEEIRLKTRTTTVETISQHYWLVQGLQK---LDALTRI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              + ++  +IF   K   V L   L  +GF+  A++G++ Q  R K +   K+GT+ ++
Sbjct: 241 LEAEAVEAMLIFVRTKVATVELAEKLAARGFASAALNGDMTQGLREKTVEQLKDGTLDIV 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   VA  +++ + A
Sbjct: 301 VATDVAARGLDVQRISHVVNYDIPYDTESYVHRIGRTGRAGRQGQAIIFVAPREMRMLHA 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IEK   +++  L        P   +++  + +  ++      +  G +  ++  +   + 
Sbjct: 361 IEKATRQQIARLQ------LPSRREVNQRRIDQFKEKIIAASRQPGLEFFEELIAQATAE 414

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
             +   +  + L   +Q+         G  PA
Sbjct: 415 AEIDSQQLAAGLAYLLQQARPLLPEEGGPPPA 446


>gi|332030497|gb|EGI70185.1| Putative ATP-dependent RNA helicase DDX47 [Acromyrmex echinatior]
          Length = 448

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 143/391 (36%), Positives = 224/391 (57%), Gaps = 7/391 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLGL   +    LD  + +PT IQ + IPL LQ  DV G+A+TG+GKTA+F LP+L
Sbjct: 18  ITWKDLGLVDILCKTCLDLKWKEPTRIQQEAIPLTLQGKDVIGLAETGSGKTAAFALPIL 77

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      LIL PTRELA Q+++ F+  G +  +   +L+GG+   AQ   LE
Sbjct: 78  QALLENPQRYFA---LILTPTRELAFQISEQFDALGSSIGVKTVVLVGGMDMHAQGMILE 134

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGR++DH    K      ++ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 135 KKPHIIIATPGRLVDHLENTKGFNLRQLKFLVMDEADRILNMDFEVEVDKILRVIPRERR 194

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATMT ++QK+    L+NP ++EV+T   T E ++  ++       K   +    +
Sbjct: 195 TLLFSATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPV---KFKDVYLVHI 251

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + +IFC    N V     L   GF+   +HG + Q  R+  L+ FK     ++
Sbjct: 252 LNELAGNSFMIFCGTCNNTVRTALLLRNLGFTAVPLHGQMTQNKRIAALTKFKAKNRSIL 311

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR G++ T V + D++    
Sbjct: 312 ISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQR 371

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           IE+LI K++     +   +    E++  AQ 
Sbjct: 372 IEQLISKQLPLFPTEEEEVMLLQERVSEAQR 402


>gi|254508223|ref|ZP_05120347.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 16]
 gi|219548840|gb|EED25841.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 16]
          Length = 403

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 200/367 (54%), Gaps = 5/367 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           + L P ++ A+ + GY +PT IQ + IP  L   D+   A TGTGKTA+FVLP L  L+ 
Sbjct: 1   MELDPNLLLAIEEMGYDRPTQIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQYLQD 60

Query: 66  GRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
              R   P  + IL PTRELA QVAD      K+  L +  + GG+ ++     L +  D
Sbjct: 61  FPRRKPGPARILILTPTRELAMQVADQARALAKHTKLNIFTITGGVQYQEHADILGKTQD 120

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGR++++ N  +     IE LV+DEADRMLDMGF P +  +++   + +QTLLFS
Sbjct: 121 IVVATPGRLMEYINAERFDCRAIEWLVLDEADRMLDMGFGPTVDRLSNECRWRKQTLLFS 180

Query: 185 AT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           AT     ++  + + L++P  I+        + I   +        K            D
Sbjct: 181 ATLEGKGVEGFTADLLKDPADIDAEPSRRERKKIAQWYHRADDMNHKLE---LLKKIITD 237

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +  I+F   ++ +  L   LEK       I G + Q  R   ++ F++GT+ +++A+D
Sbjct: 238 QAERSIVFLKTRERLGELRTELEKAQIPCAWIQGEMPQDRRNNAIARFRDGTVNVLLATD 297

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A +LV   D   +D + + 
Sbjct: 298 VAARGIDLPDVSHVINYDMPRSADVYLHRIGRTARAGKKGNAVSLVEAHDQPMLDRVARY 357

Query: 364 IEKKVDW 370
           +++ +  
Sbjct: 358 VKEDIKE 364


>gi|91794302|ref|YP_563953.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91716304|gb|ABE56230.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 419

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 147/415 (35%), Positives = 221/415 (53%), Gaps = 10/415 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    L P ++ ++    YV PTP+Q + IP +L  HD+   AQTGTGKTA+F +P++
Sbjct: 10  MSFTAFNLHPVLLASIKAQSYVDPTPVQRQAIPEILLGHDLLVGAQTGTGKTAAFAIPLV 69

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L          + +   IL PTRELA QV  N     +   L  A+  GG     Q +
Sbjct: 70  HKLLMQSEEAHQGKVIKGLILTPTRELALQVQHNIHALLQGTELKHAIAYGGASIGEQVR 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             + G D+L+ TPGR+LDH     + + ++E LV DEADRMLDMGF   I ++   +P  
Sbjct: 130 SFKAGVDILVATPGRLLDHLRHKAVSLKHVEYLVFDEADRMLDMGFKDEIVDLLKRLPKQ 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT+ D +   S+N L  PK IEV   ++    IE        +          
Sbjct: 190 RQTLLFSATLNDSIFSFSKNLLNEPKVIEVAKANTKVAKIEERVYCVDEERKLSLLCHLL 249

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             +     +  ++F   K+   NL   ++K G    A HG++ Q  R  +L +F +  +Q
Sbjct: 250 SKERW---QQVLVFSRTKQGADNLACQMQKSGIEALAFHGDLSQSVRESVLKDFSQAKVQ 306

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI D+ +V N+++P+ +E+YIHRIGRTGRAG+ G A TL A ED   +
Sbjct: 307 VLVATDVAARGLDIEDLNYVVNYELPHVSEDYIHRIGRTGRAGKDGIAVTLFAIEDTAKL 366

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            ++E L+++++   W  G    L    E     +H  A +     +K+ G   ++
Sbjct: 367 MSLETLLDRRLPQQWYPGFEPDLTK--EVTLGRKHTKAGQKQQARRKALGAKAKR 419


>gi|19074653|ref|NP_586159.1| putative ATP-DEPENDENT RNA HELICASE [Encephalitozoon cuniculi
           GB-M1]
 gi|74621115|sp|Q8SR63|RRP3_ENCCU RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|19069295|emb|CAD25763.1| putative ATP-DEPENDENT RNA HELICASE [Encephalitozoon cuniculi
           GB-M1]
          Length = 400

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 124/406 (30%), Positives = 193/406 (47%), Gaps = 12/406 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F DL +   ++    + G  +PT +Q + IP VL   DV  ++QTG+GKT +FVLP++
Sbjct: 1   MEFGDLRIDESLIKTCQEKGITRPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIV 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + L     + R    L++ PTREL++Q+A+ F  +         L+ G       N+  +
Sbjct: 61  SHL---LQKNRSFYCLVVAPTRELSSQIAECFNMFQATGLRVCLLVGGANFNVQANQLSK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   V+                    +   V+DEADR  +  F+  ++ I   +   RQT
Sbjct: 118 RPHVVVGTPGRIAEHVLKTKSFRTERVRKFVLDEADRFFEQDFVEDLETIIPSLREKRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLF+ATM+DE+ K+S +     KR +    +   ET+            K        L 
Sbjct: 178 LLFTATMSDEISKLSSSI---LKRPKTIRTAEKYETVPALKEYYLFVAMKWKNSALVELL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + I+F +       +  +L + GF   A+HG + Q  R + + +FKE    ++V
Sbjct: 235 EMSQGMSVIVFVSMCVTARVMSLALARLGFCSEALHGELSQEKREEAMRSFKESRFNVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL +RGLDI  V  V NFDVP   ++YIHR+GRT RAGR G A TLV + D++ I  I
Sbjct: 295 CTDLGSRGLDISHVDLVINFDVPKSGKDYIHRVGRTARAGRSGTAITLVTQYDVEQIQKI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQH------NHARKNNPIP 400
           E  +EKK++       +      +I+ A           RK N  P
Sbjct: 355 EFTLEKKLEEFKMMKKNFGTICARIEEAIQEAQETLKEERKRNRRP 400


>gi|116199007|ref|XP_001225315.1| eukaryotic initiation factor 4A-12 [Chaetomium globosum CBS 148.51]
 gi|118573324|sp|Q2GWJ5|FAL1_CHAGB RecName: Full=ATP-dependent RNA helicase FAL1
 gi|88178938|gb|EAQ86406.1| eukaryotic initiation factor 4A-12 [Chaetomium globosum CBS 148.51]
          Length = 394

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 118/360 (32%), Positives = 196/360 (54%), Gaps = 5/360 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + ML 
Sbjct: 28  TFESMSLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQ 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 88  VIDTA---VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDY 144

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 145 GQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVV 204

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 205 VVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDL--YD 262

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG++ Q+ R  I+ +F++G  +++++
Sbjct: 263 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLIS 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 323 TDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIE 382


>gi|312219930|emb|CBX99872.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1226

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 128/373 (34%), Positives = 201/373 (53%), Gaps = 17/373 (4%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
             F + G    V+  V   G+ KPT IQ +  P+ L   DV G+A+TG+GKT ++ LP + 
Sbjct: 818  TFDEAGFPSYVMNEVKAQGFAKPTAIQAQGWPMALSGRDVVGVAETGSGKTLTYCLPAIV 877

Query: 62   ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +      A    P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 878  HINAQPLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQIRDL 937

Query: 120  ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 938  ARGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 997

Query: 180  TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            T ++SAT   E+++++ ++  +  ++ + +   +A       V                 
Sbjct: 998  TCMWSATWPKEVRQLASDYQNDWIQVNLGSMDLSAHHRIQQIVEH------------LET 1045

Query: 240  QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               D     +IF   K+    +   L + G+   +IHG+  Q  R  +L+ FK G   +M
Sbjct: 1046 IMSDKENKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIM 1105

Query: 300  VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            VA+D+A+RG+D+ ++ HVFN+D PN +E+Y+HRIGRTGRAG +G A TL   E+ K    
Sbjct: 1106 VATDVASRGIDVRNITHVFNYDYPNNSEDYVHRIGRTGRAGANGTAITLFTTENSKQARD 1165

Query: 360  IEKLI---EKKVD 369
            + +++   ++++D
Sbjct: 1166 LVQILTESKQQID 1178


>gi|153831607|ref|ZP_01984274.1| ATP-dependent rna helicase, dead box family [Vibrio harveyi HY01]
 gi|148872117|gb|EDL70934.1| ATP-dependent rna helicase, dead box family [Vibrio harveyi HY01]
          Length = 443

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 125/405 (30%), Positives = 194/405 (47%), Gaps = 9/405 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + K T IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 1   MQFKDLGLDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR +IL PTRELA QV               AL++GG  F  Q K L
Sbjct: 61  HKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLGGLTYDAALILGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH     L ++ +E LV+DEADRMLD+GF P ++ I       R+
Sbjct: 121 RRYPKFIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHKAAKHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +              +    S  E  +         +      + + +
Sbjct: 181 QTLMFSATLDHAEVNDIASEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILERV 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  IIF   + +   L + L ++     A+ GN++Q  R  I+S F+    +++
Sbjct: 241 LEEAEYRQVIIFTATRDDTERLTNKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDI  V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D      
Sbjct: 301 VTTDVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKR 360

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKIDIA-QHNHARKNNP 398
           +E  +++ +++     L G    L P   K D   +    +K  P
Sbjct: 361 VETYLQQDLNFSVFEDLKGKFKGLKP--RKPDFRNKKTETKKARP 403


>gi|116073020|ref|ZP_01470282.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
 gi|116068325|gb|EAU74077.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
          Length = 599

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 136/370 (36%), Positives = 213/370 (57%), Gaps = 7/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G S  +V  + + GY +P+PIQ    P ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 45  FAGFGFSEALVKTLTEKGYKEPSPIQAAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 104

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKLER 121
           L+K   +   P+ L+L PTRELA QVA++F+ Y   +     L I G   F +Q   L+R
Sbjct: 105 LQKDATK---PQALVLAPTRELAMQVAESFKAYSAGHPHLNVLAIYGGSDFRSQIHALKR 161

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR++DH  +G L    +  LV+DEAD ML MGFI  ++ I   +P  RQ +
Sbjct: 162 GVDVVVGTPGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQVV 221

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++S+ +L+ P  I + T     +             +         +  
Sbjct: 222 LFSATMPSEIRRLSKRYLREPAEITIKTKE---KEARRIRQRCITLQNSHKLEALNRVLE 278

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T +  IIF   K   +N+  SLE  G  V  ++G++ Q  R + +   ++GT+ ++VA
Sbjct: 279 AVTGEGVIIFARTKAITLNVSESLEAAGHDVAVLNGDVPQNQRERTVERLRKGTVNILVA 338

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N+D+P  +E Y+HRIGRTGRAGR G+A   V   + + ++ +E
Sbjct: 339 TDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFVTPRERRFVNNLE 398

Query: 362 KLIEKKVDWL 371
           + + ++++ +
Sbjct: 399 RAVGQEIEPM 408


>gi|78776809|ref|YP_393124.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251]
 gi|78497349|gb|ABB43889.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 432

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 159/435 (36%), Positives = 245/435 (56%), Gaps = 22/435 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LG+   ++ A+ D GY KPT IQ + IPL+L + DV   AQTGTGKTA+F L M 
Sbjct: 1   MSFEKLGVIKPLLSAIKDLGYEKPTTIQTRAIPLILAKSDVFATAQTGTGKTAAFGLGML 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +    + R  R L++ PTREL+ Q+ ++ + Y KN  + +A+L+GG   E+Q K L
Sbjct: 61  QRLRKTSDDKQRALRGLVIAPTRELSIQIYEDLQSYAKNMGINIAVLVGGKDLESQQKIL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D++I TPGR+L+H ++G  L +     V+DEADRMLDMGF+  I+ I  ++P   Q
Sbjct: 121 KEGVDIVIATPGRVLEHVDKGLSLSHVEIF-VLDEADRMLDMGFMKEIRRIHPILPKRHQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT +D+++K+S+  L  P  IE +  +ST +TI         +           +
Sbjct: 180 TLLFSATFSDKVRKLSKLILTKPAFIETSKKNSTVDTINQVAYLVDTEKKAPL---LAYI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  ++F   K +   L   L+K G     IHG+  Q +R+K L+ FKEG I+++
Sbjct: 237 IGSRNFRQVLVFTRTKASADLLVVELKKDGLKCGIIHGDKTQANRLKTLNEFKEGKIKVL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI ++  V N+++P+  E+Y+HR+GRTGRAGR G A +L+   +   I  
Sbjct: 297 VATDIASRGLDIEELPFVINYELPSIPEDYVHRVGRTGRAGRDGMAISLIDIYEKFDIKD 356

Query: 360 IEKLIEKKVD--------------WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           IEKLI  K+                L+ D   L    +K+++      RK     +KS  
Sbjct: 357 IEKLIGMKIPQEIIAGFEPDPTIRRLDQDELKLKSEHKKVEVKHERKPRKKEDGSKKSAN 416

Query: 406 FDRR---KKNYSSQK 417
           + +    KK  +S++
Sbjct: 417 YKKPVTTKKRKTSKR 431


>gi|88808892|ref|ZP_01124401.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
 gi|88786834|gb|EAR17992.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
          Length = 607

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 140/371 (37%), Positives = 214/371 (57%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G S  ++  + + GY +P+PIQ    P ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 59  FAGFGFSEALLRTLEEKGYKEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 118

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKLER 121
           LE    R   PR L+L PTRELA QVAD+F+ Y   +     L I G   F +Q   L+R
Sbjct: 119 LEG---RSSKPRVLVLAPTRELAMQVADSFKAYAAGHPHLNVLAIYGGSDFRSQIHTLKR 175

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR++DH  +G L    +  LV+DEAD ML MGFI  ++ I   +P  RQ +
Sbjct: 176 GVDVVVGTPGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQVV 235

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +E++++S+ +LQ P  I + T    A+ I    +     +          +  
Sbjct: 236 LFSATMPNEIRRLSKRYLQEPAEITIKTKDREAKRIRQRSITMQNSHK---IEALNRVLE 292

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T +  IIF   K   + +  SLE  G  V  ++G++ Q  R + +   ++GT+ ++VA
Sbjct: 293 AVTGEGVIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVDRLRKGTVNILVA 352

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N+D+P  +E Y+HRIGRTGRAGR G+A   V   + + +  +E
Sbjct: 353 TDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAILFVTPRERRFVGNLE 412

Query: 362 KLIEKKVDWLN 372
           + + + ++ ++
Sbjct: 413 RAVNQSIEPMD 423


>gi|325262198|ref|ZP_08128936.1| ATP-dependent RNA helicase DbpA [Clostridium sp. D5]
 gi|324033652|gb|EGB94929.1| ATP-dependent RNA helicase DbpA [Clostridium sp. D5]
          Length = 481

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 132/423 (31%), Positives = 222/423 (52%), Gaps = 17/423 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    LS +++ ++   GY +PT IQ + I  +L   +V   A TG+GKTA+F +P+  
Sbjct: 4   EFYKYELSKEILESLNGLGYKEPTSIQQEVILPMLAGKNVVVKAPTGSGKTAAFAIPICE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +         P+ LILEPTRELA QV++     G+   L V  L GG P + Q + L +
Sbjct: 64  NICW---EENAPQALILEPTRELAVQVSEEMFYIGRKKRLKVPALFGGFPIDKQIQTLRQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + ++  TPGRI+DH  R  L +  +  LVIDEAD MLDMGFI  ++ I S+VP   +  
Sbjct: 121 KSHIVTGTPGRIMDHLGRESLNLEKVRWLVIDEADLMLDMGFIDEVKKILSMVPTDCRIS 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  E+Q++ + F+ +   +  +  +   E +       Y    +        +  
Sbjct: 181 LFSATLKPEIQELVDEFIPDMTIVMQSATN---EQVAAITEKLYFTDQENKYDTFLEILI 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  ++ +IFC  ++    L   L ++      +HG ++QR R+K +  F+ G  + ++A
Sbjct: 238 NENPQSCMIFCGTREMTNVLFQKLRRRRIFCGMLHGEMEQRERLKTVDAFRRGCFRFLIA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D   + HV N+D P++ E Y+HRIGRTGR G+ G A +LV +ED + +  +E
Sbjct: 298 TDVAARGIDFEQITHVVNYDFPSKKETYVHRIGRTGRNGKCGTAISLVTEEDKRMLRQVE 357

Query: 362 KLIEKKVDWLNGDLSSLNPPLE---------KIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           +   +++ +   +L  L+   E         K+++        N  I + + G  R+ K 
Sbjct: 358 EYAGRQLPF--TELPVLDEEKEKTFWKSQHIKVEVKPKKGTALNKGITRLTIGGGRKSKM 415

Query: 413 YSS 415
            + 
Sbjct: 416 RAG 418


>gi|253568946|ref|ZP_04846356.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6]
 gi|251840965|gb|EES69046.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6]
          Length = 647

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 155/481 (32%), Positives = 254/481 (52%), Gaps = 25/481 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP+L
Sbjct: 3   TFEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++    + R+P++LIL PTREL  Q+A +   Y K  +    L + G    ++Q + L
Sbjct: 63  QQIDV---KNRVPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD   R  + ++ +  +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KRGVHIIVATPGRLLDLMERKTVSLSTVHNIVMDEADEMLNMGFTDSINAILADVPKERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+N+LQN K I +   +   E+  +     Y   +K      + +
Sbjct: 180 TLLFSATMSPEIARISKNYLQNAKEITIGRKN---ESTSNVKHVAYTVQAKDKYAALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+
Sbjct: 237 VDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKLRE 356

Query: 360 IEKLIEKKV---------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK-----STG 405
           IE++I KK                L  +   LEK+ + +         I +K        
Sbjct: 357 IERIIGKKFIAGEMPTGKQICEKQLIKVIDELEKVKVNEEEITDFMPEIYRKLEWLSKED 416

Query: 406 FDRRKKNYSSQKSHIPLKESEKISKLQQDIQEN--DADSLGFRGNMPAF-MLPKNRGKLN 462
             +R  ++   +     ++ E+I       + N  D+   G R   P F  L  N GK++
Sbjct: 417 LIKRMVSHEFNRFLDYYRDREEIETPTDIRERNTRDSRERGSRKAAPGFTRLFINLGKMD 476

Query: 463 D 463
            
Sbjct: 477 S 477


>gi|157117281|ref|XP_001653010.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108883352|gb|EAT47577.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 799

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 134/412 (32%), Positives = 226/412 (54%), Gaps = 5/412 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++ A+  + Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 280 SFAHFGFDEQLMKAIRKSEYTQPTPIQAQGVPAALSGRDIIGIAKTGSGKTAAFLWPMLV 339

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  LIL PTREL+ Q+    +K+GK YN++V    GG     Q+K L
Sbjct: 340 HIMDQKELGPGDGPIGLILAPTRELSLQIYQEAKKFGKIYNISVCCCYGGGSKWEQSKAL 399

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+GA++++ TPGR++D        +  +  LV+DEAD+M ++GF P +++I + V   RQ
Sbjct: 400 EQGAEIVVATPGRMIDMVKMKATNLQRVTYLVLDEADKMFNLGFEPQVRSICNHVRPDRQ 459

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT    +++++ + L +P RI         E I    +       K   LL +++
Sbjct: 460 TMLFSATFKKRIERLARDVLTDPVRIMHGDLGEANEDITQHVIVMNNPAHKWNWLLAKMV 519

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +IF  +K +   + ++L  + +    +HG++DQ  R  +++ F++  +++M
Sbjct: 520 ELLSEG-TVLIFVTKKADAEQVANNLRLKEYDPVLLHGDMDQADRNIVITRFRKREVEIM 578

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + +V N+D+    + + HR+GRTGRAG  G A+TLV  +D +    
Sbjct: 579 VATDVAARGLDIPHIKNVINYDIARDIDTHTHRVGRTGRAGEKGTAYTLVVDKDKEFAGH 638

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE--KIDIAQHNHARKNNPIPQKSTGFDRR 409
           + + +E     +  +L  L       +    +HN+  KN  +     GF  R
Sbjct: 639 LVRNLEGANQEVPEELMKLAMQSAWFRNSRFKHNNKGKNLNVGGAGLGFRCR 690


>gi|147671861|ref|YP_001214917.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O395]
 gi|146314244|gb|ABQ18784.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
 gi|227014692|gb|ACP10901.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
          Length = 452

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 124/394 (31%), Positives = 189/394 (47%), Gaps = 6/394 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR LIL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 65  HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG   ++ TPGR+ DH +   L +  +E LV+DEADRMLD+GF   ++ I +     R+
Sbjct: 125 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D             +   +     + E  +         +      L   +
Sbjct: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRI 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  IIF   + +   L   L K      A+ GN++Q  R  I+  F+    +++
Sbjct: 245 LADAEYRQVIIFTATRADTDRLTEKLNKNNLKAVALSGNLNQTQRNTIMGQFERAVFKIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDIP V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D +    
Sbjct: 305 VTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKR 364

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKIDIA 388
           +E  +++++ +     L G    L P   K   A
Sbjct: 365 VEAFLQQEIQFEVLAGLEGKFKGLKPRQAKPKAA 398


>gi|224284362|gb|ACN39916.1| unknown [Picea sitchensis]
          Length = 593

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 203/379 (53%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +   +  V+  +  AG+ +PT IQ +  P+ L+  D+ GIA+TG+GKT +++LP + 
Sbjct: 171 SFREASFTDHVLRELERAGFSEPTAIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 230

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA Q+     K+G +  +    + GG P   Q + L
Sbjct: 231 HINAQPHLAHGDGPIVLVLAPTRELAVQIQQESVKFGTSSKIKSTCIYGGAPKGPQIRDL 290

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I + +   RQ
Sbjct: 291 QRGVEIVIATPGRLIDMLEARHTNLRRVTYLVLDEADRMLDMGFEPQIRKIITQIRPDRQ 350

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL +SAT   E++ ++  FL NP ++ + +    A       V   ++Y K    L +LL
Sbjct: 351 TLYWSATWPREVENLARQFLHNPYKVIIGSADLKANHAISQIVEVVSEYEKY-PRLIKLL 409

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +IF   KK    +   L   G+   +IHG+  Q  R  +L  FK G   +M
Sbjct: 410 EEIMDGSRILIFMETKKGCDQVTKQLRMDGWPALSIHGDKSQAERDWVLGEFKAGKSPIM 469

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD+ D+  V N+D P   E+Y+HRIGRTGRAG  G A++     + +    
Sbjct: 470 TATDVAARGLDVKDIKCVINYDFPGSLEDYVHRIGRTGRAGAKGTAYSFFTAANGRFARE 529

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +  ++++    +N +L+++
Sbjct: 530 LVGILQEAGQRVNPELAAM 548


>gi|82546134|ref|YP_410081.1| ATP-dependent RNA helicase RhlB [Shigella boydii Sb227]
 gi|187732305|ref|YP_001882395.1| ATP-dependent RNA helicase RhlB [Shigella boydii CDC 3083-94]
 gi|123558220|sp|Q31UK5|RHLB_SHIBS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739553|sp|B2TU12|RHLB_SHIB3 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|81247545|gb|ABB68253.1| putative ATP-dependent RNA helicase [Shigella boydii Sb227]
 gi|187429297|gb|ACD08571.1| ATP-dependent RNA helicase RhlB [Shigella boydii CDC 3083-94]
          Length = 421

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 137/413 (33%), Positives = 206/413 (49%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV  +   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVVEVLEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGAPRNRRRSG 421


>gi|301118572|ref|XP_002907014.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262108363|gb|EEY66415.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 2091

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 132/430 (30%), Positives = 216/430 (50%), Gaps = 8/430 (1%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
             +   G S +++  +   GY +P  IQ + +P ++   DV GIA+TG+GKT +F+LPM  
Sbjct: 1491 KWTQCGFSVRMLQLIKKHGYEEPFAIQKQALPAIMSGRDVIGIAKTGSGKTLAFLLPMFR 1550

Query: 62   IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +  +        P  +I+ P RELA Q+     K+ K   L    + GG     Q   L
Sbjct: 1551 HVLAQPPLQENEGPIGIIMAPARELAQQIYVEARKFSKGLGLRATAVYGGSSVSEQIANL 1610

Query: 120  ERGADVLICTPGRILDHFNRGKLLM---NNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +RG+D++ICTPGR++D        M     +  +V+DEADRM DMGF P I  I   +  
Sbjct: 1611 KRGSDIVICTPGRMIDILCMSAGKMVSLQRVTYVVLDEADRMFDMGFEPQITKIMMNIRP 1670

Query: 177  TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             RQTLLFSAT    ++ ++   L+ P  I V T S+   + +        +   K   L 
Sbjct: 1671 DRQTLLFSATFPRSVESLARKVLKKPVEITVGTRST--ASGDITQYVEVREEDDKFMRLL 1728

Query: 237  QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            QLL       N ++F N+++    +   L K G+   ++HG  DQ  R   + +FK    
Sbjct: 1729 QLLGLWYEKGNILVFVNKQQACDQIFQDLMKAGYPALSLHGGKDQVDRDYTIDDFKRKVR 1788

Query: 297  QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             +MVA+ +A RGLD+ D+  V N+  PN  E+Y+HR+GRTGRAGR G A+T ++ ++ ++
Sbjct: 1789 TVMVATSVAGRGLDVKDLVLVINYHCPNHMEDYVHRVGRTGRAGRKGTAYTFISPDEEEY 1848

Query: 357  IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
               + K +E     +  +L++L        + +       +    K   FD  ++N + +
Sbjct: 1849 SVDLVKALENAKQTIPPELTALAEGF-TAKVKRGEARYHGSGFKGKGFTFDETERNETQR 1907

Query: 417  KSHIPLKESE 426
             + +  ++ E
Sbjct: 1908 TADLQRRQYE 1917


>gi|332375408|gb|AEE62845.1| unknown [Dendroctonus ponderosae]
          Length = 469

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 127/391 (32%), Positives = 213/391 (54%), Gaps = 7/391 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + ++DLGL   +  A     +  P+ IQ ++IP+ LQ  D+ G+A+TG+GKTA+F LP+L
Sbjct: 39  VTWSDLGLVDVLCKACEQLKWKTPSKIQRESIPVALQGKDIIGLAETGSGKTAAFALPIL 98

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN-KKL 119
             L +   R      LIL PTRELA Q+++ FE  G    +   +++GG+   +Q     
Sbjct: 99  QALLENPQR---HFALILTPTRELAFQISEQFEALGSGIGVKSIVIVGGLDMTSQALMLA 155

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   ++      +    N     +  ++ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 156 KKPHIIIATPGRLVDHLSNTKGFNLRALKFLVMDEADRILNMDFEAEVDKILKVIPRERR 215

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT ++ K+    LQ+P R+EV+T   T E +           +K   +    +
Sbjct: 216 TFLFSATMTKKVNKLQRACLQDPVRVEVSTKYQTVEKLLQ---YYVFIPAKFKDVYLVHI 272

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++   + ++FC+   N +     L   GF+   +HG + Q  R+  L+ FK     ++
Sbjct: 273 LNENAGNSFMVFCSTCNNTIRTALLLRNLGFTAVPLHGQMSQNKRLAALTKFKAKNRSIL 332

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    
Sbjct: 333 ISTDVASRGLDIPHVDIVINFDIPMHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQR 392

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           IE LI K++     +   +    E+++ +Q 
Sbjct: 393 IEHLIGKQLPLYKTEEEEVMGLQERVEESQR 423


>gi|308188835|ref|YP_003932966.1| ATP-dependent RNA helicase [Pantoea vagans C9-1]
 gi|308059345|gb|ADO11517.1| putative ATP-dependent RNA helicase [Pantoea vagans C9-1]
          Length = 430

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 139/421 (33%), Positives = 214/421 (50%), Gaps = 11/421 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV A+   G+   TPIQ   +P  L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVVEALDSKGFQYCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L         +V  PR LIL PTRELA Q+  + E    +  L + L  GG  ++ Q K
Sbjct: 70  HLLSHPAAEGRQVNQPRALILAPTRELAVQIHADAEPLTASTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE+G D+L+ T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLEQGVDILVATTGRLIDYAKQNHVNLGAIQVMVLDEADRMFDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F        V       +T        +   +++   L Q
Sbjct: 190 TQRLSMLFSATLSYRVRELAFEHMNSAEYVEVEPEQ-KTGHRIQEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     I+F N K    ++   L   G  V  + G++ Q+ R++IL +F +G + 
Sbjct: 249 TLLEEEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARK--NNPIPQKSTGFDRRKK 411
            +IE+ I   +          L+ L PP         N  R+  NN   + +   + RK+
Sbjct: 369 PSIEEYIGHSIPVSKYSSEALLTDLPPPKRLQRSRTGNGQRRGGNNANRRGAPRNNNRKR 428

Query: 412 N 412
           +
Sbjct: 429 S 429


>gi|283771250|ref|ZP_06344139.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus H19]
 gi|283459455|gb|EFC06548.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus H19]
          Length = 506

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 137/441 (31%), Positives = 225/441 (51%), Gaps = 14/441 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S   V ++   G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +  ++LIL PTRELA QVA+   ++ +   + V  + GG+P E Q K L++
Sbjct: 63  KVVG----KQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L  + I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     F     +  K           
Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFT--NFLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  IIF   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 237 VHQPELAIIFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 297 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
               +K       +S+L PP  K ++ Q         +    +     +    S +    
Sbjct: 357 DANGRK-------MSALRPPHRK-EVLQAREDDIKEKVENWMSKESESRLKRISTELLNE 408

Query: 422 LKESEKISKLQQDIQENDADS 442
             + + ++ L Q++ E + + 
Sbjct: 409 YNDVDLVAALLQELVEANDEV 429


>gi|290894075|ref|ZP_06557049.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J2-071]
 gi|290556419|gb|EFD89959.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J2-071]
          Length = 470

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 126/419 (30%), Positives = 205/419 (48%), Gaps = 21/419 (5%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +L LS ++  A+ + GY + TP+Q   IP+ L   D+   +QTG+GKTA+F +P+   +E
Sbjct: 3   NLKLSEEIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQVE 62

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
               +   P+ LI+ PTRELA QV       G+   +  A + G  PF  Q  +L +   
Sbjct: 63  WEENK---PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNH 119

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGR+LDH  +G L ++ +  LV+DE D ML MGFI  +++I S +P  RQ L FS
Sbjct: 120 IVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFS 179

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           ATM +             KR + +       + +   +      +       + +   + 
Sbjct: 180 ATMPE-------EMQDLIKRYQDDPMVIEMASEKTNPIFHVEMQTDNKEKTLKDVLITEN 232

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             + IIFCN K  V  L             IHG + Q  R + + +FK G  + ++A+D+
Sbjct: 233 PDSAIIFCNTKNQVDELTDL---LDVKANKIHGGLRQEDRFRAMDDFKSGKSRFLIATDV 289

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           A RG+D+ +V  V N+D+P   ENY+HRIGRTGRAG+ GKA + V   +   +  IE+++
Sbjct: 290 AGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEML 349

Query: 365 EKKVD--------WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           +  ++         +  +  +     +K    +     K N    K      +KK   +
Sbjct: 350 DVTIEKKRKPTVIEVKANEDAFRKKQQKRPTIKKARGEKLNKNIMKLYFNGGKKKKIRA 408


>gi|310658279|ref|YP_003936000.1| ATP-dependent RNA helicase, dead/deah box family [Clostridium
           sticklandii DSM 519]
 gi|308825057|emb|CBH21095.1| atp-dependent rna helicase, dead/deah box family [Clostridium
           sticklandii]
          Length = 423

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 129/427 (30%), Positives = 220/427 (51%), Gaps = 15/427 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++   +  + +    KPT IQ + IPL+L+  D+ G AQTGTGKT +FVLP++ 
Sbjct: 3   TFYDLGINTDNIDKLRNMYITKPTKIQEQAIPLILKGKDIIGKAQTGTGKTLAFVLPLIQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L++    + +P+ LIL PTRELA Q+    E+  K+    V  + GG   E Q  +L+ 
Sbjct: 63  MLDEN---ISIPQVLILTPTRELALQITTVVEELLKDSAFDVVSVYGGHDVEKQKNQLKN 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            A  ++ TPGRILDH   G +   N++ +VIDEAD+M+  GF+  +  +    P   Q +
Sbjct: 120 NAQFVVGTPGRILDHIREGSINFKNLKHVVIDEADQMMAFGFMEDLDLLFDKTPQKIQKM 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+ D ++K++   + N   I+++  S   + I            ++     ++   
Sbjct: 180 IFSATIPDMIRKLARKIMNNAINIDIDPESVVIDNIRQ---VVVRTTEERRLQSLEMALK 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      +IFC  K+    L  ++    + V  +HG+  Q  R  I+  F+E     +V 
Sbjct: 237 EFKPFMAMIFCKSKERANELYDNMVNLRYDVEILHGDFSQNKRENIMKRFRELKFPFLVT 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D++ARG+DI  + HVFN+D+P + E YIHR+GRTGRAG  G A + VA ++++ +  I+
Sbjct: 297 TDISARGMDIDGITHVFNYDIPRQIEYYIHRVGRTGRAGEKGIAVSFVADKEVEQMKKIQ 356

Query: 362 KLIEKKVDWL---------NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           K +   +  +           ++ +L     K    ++    K+ P    +    +++ N
Sbjct: 357 KTVGISIPEVYDRSSDERKRMNIETLLEGKVKTKEVRYRKTTKSKPSLVNARKSGKKRTN 416

Query: 413 YSSQKSH 419
                S 
Sbjct: 417 PRKGSSK 423


>gi|260434308|ref|ZP_05788278.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
 gi|260412182|gb|EEX05478.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
          Length = 607

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 134/371 (36%), Positives = 212/371 (57%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G S  ++  + D GY +P+PIQ    P ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 59  FAGFGFSEALLRTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 118

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLER 121
           LE G+   + P+ L+L PTRELA QVA++F+ Y   +     L + G   F +Q   L R
Sbjct: 119 LESGQ---KTPQALVLAPTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQISALRR 175

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR++DH  +G L  + +  LV+DEAD ML MGFI  ++ I   +P  RQ +
Sbjct: 176 GVDVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQRQVV 235

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++S+ +L++P  + + T     + I    +     +        Q +  
Sbjct: 236 LFSATMPPEIRRLSKRYLKDPAEVTIRTKDQEGKRIRQRSITVPMPHK---LEALQRVLD 292

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  IIF   K   + +  +LE  G  V  ++G++ Q  R + +   + G++ ++VA
Sbjct: 293 ACGGEGVIIFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVA 352

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N+D+P  +E Y+HRIGRTGRAGR G+A   V   + + I  +E
Sbjct: 353 TDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPRERRFIRNLE 412

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 413 RATGQPIEAME 423


>gi|157960630|ref|YP_001500664.1| ATP-dependent RNA helicase SrmB [Shewanella pealeana ATCC 700345]
 gi|157845630|gb|ABV86129.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 411

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 132/371 (35%), Positives = 214/371 (57%), Gaps = 2/371 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L P ++ ++   G+ KPT IQ +TIP+ +++ D+   A TGTGKTASF+LP L
Sbjct: 4   MQFEDLQLDPCLLESLKAMGHNKPTTIQQQTIPVAMEQRDILARAPTGTGKTASFLLPAL 63

Query: 61  TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L     R     R LIL PTRELA+Q+            L   ++ GG+P+  Q + L
Sbjct: 64  QHLIDFPRRYGGRARVLILTPTRELASQIHRYASHLATGLGLDTVIITGGVPYGPQEEAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++  D+L+ TPGR++++ ++G      +E+L+IDEADRMLDMGF   +++I       +Q
Sbjct: 124 QKNVDILVATPGRLMEYLDKGHFNAEEVEVLIIDEADRMLDMGFSAVVESIAIESVGRKQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT+ +       +       +++   +  +E  +       A        L   L
Sbjct: 184 TMLFSATL-EGSDVGRFSHNLLTNPVKLEAEAPRSEKAKIHQWIHLADDKAHKFALLCAL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+ ++  I+F   +++V +L   L+K+G +   + G+++Q++R + L  F +G + ++
Sbjct: 243 LKQEEVQRTIVFVKTRESVASLEGLLQKEGITCAFMRGDMEQKARFQALGRFTKGEVNIL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI D+ HV NFD+P  A+ Y+HRIGRTGRAG  G A +LV   DI+ +  
Sbjct: 303 LATDVAARGIDIDDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDIRVVGK 362

Query: 360 IEKLIEKKVDW 370
           IE+ IE+ +  
Sbjct: 363 IERYIEQPLKR 373


>gi|300714781|ref|YP_003739584.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
 gi|299060617|emb|CAX57724.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
          Length = 430

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 138/422 (32%), Positives = 212/422 (50%), Gaps = 9/422 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P+V+ A+   G+   TPIQ   +P  L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LIL PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  HLLSNPAPEGRQVNQPRALILAPTRELAVQIHADAEPLTQATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYTKQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F        V       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSFRVRELAFENMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G + 
Sbjct: 249 TLLEEEWPDRAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG +G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKV--DWLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE+ I   +     N D  ++ L PP         N  R+     ++S+      +  
Sbjct: 369 PAIEEYIGHSITVSRYNSDALMTELPPPKRLTRHRSGNGPRRGGNNNRRSSAPRNNNRKR 428

Query: 414 SS 415
           S 
Sbjct: 429 SG 430


>gi|30018496|ref|NP_830127.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|29894036|gb|AAP07328.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
          Length = 514

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 149/365 (40%), Positives = 220/365 (60%), Gaps = 8/365 (2%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
            G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  ++  +  V+     ++
Sbjct: 1   MGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGI---VI 57

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QV +   K GK+  + +  + GG     Q + L++   +++ TPGRILDH N
Sbjct: 58  APTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN 117

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           R  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLLFSATM D +++++E F
Sbjct: 118 RKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERF 177

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           +  P+ I+V     T   I+           KK   +   L    + +  I+F   K+ V
Sbjct: 178 MTEPQHIKVKAKEVTMPNIQQ---FYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRV 234

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             L  +L  +G++   IHG++ Q  RM +L  FKEG+I+++VA+D+AARGLDI  V HV+
Sbjct: 235 DELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVY 294

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+  ++K+D +  D  +L
Sbjct: 295 NFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRM--DAPTL 352

Query: 379 NPPLE 383
           +  LE
Sbjct: 353 DEALE 357


>gi|331269837|ref|YP_004396329.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           botulinum BKT015925]
 gi|329126387|gb|AEB76332.1| DEAD/DEAH box helicase domain protein [Clostridium botulinum
           BKT015925]
          Length = 370

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 136/370 (36%), Positives = 214/370 (57%), Gaps = 6/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +LG+S  ++  +   G   PTPIQ K+I LV + +DV   AQTGTGKT +F+LPM 
Sbjct: 1   MNFKELGISEDIIKVLKSQGVTTPTPIQEKSIKLVKEENDVIAEAQTGTGKTFAFLLPMF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      V+    LI+ PTRELA Q+ +   K  K  +L +    GG    +Q KKL+
Sbjct: 61  ENMSPNINTVQG---LIVTPTRELAIQITEEANKLKKAKDLNILAAYGGKDISSQLKKLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH  R  + +  ++ +V+DEAD+ML MGF   ++ I       +Q 
Sbjct: 118 GNIHLVIATPGRLLDHIKRNTINLQKLKTIVLDEADQMLYMGFKNEVEEIMKHTSKKKQI 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  +++K++  +++ PK + + +   T + I+   V T  +  +          
Sbjct: 178 LCFSATMNSQVKKLAYRYMKEPKIVSIQSEEVTLKNIKQAVVETTDRRKQDALCKVLDED 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       IIFC  K+ V NL  +L ++G++   IHG+++Q  R +++  FK+  IQ ++
Sbjct: 238 NPFM---AIIFCRTKRRVDNLEDALHERGYNCKKIHGDLNQAKRERVMKEFKKMDIQYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+++D+P  AE+YIHRIGRTGRAG  G+    +  +D + +D I
Sbjct: 295 ATDVAARGLDISGVTHVYSYDIPENAESYIHRIGRTGRAGEEGETCLFIDPKDKRTLDII 354

Query: 361 EKLIEKKVDW 370
           EK I+  +  
Sbjct: 355 EKEIKVTIPR 364


>gi|225166117|ref|ZP_03727846.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV2]
 gi|224799638|gb|EEG18138.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV2]
          Length = 606

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 145/389 (37%), Positives = 226/389 (58%), Gaps = 13/389 (3%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
           A+LGLSP+++ AV   G+ + +PIQ   IPL+L   DV G + TG+GKTA+F LP +  +
Sbjct: 1   AELGLSPELLKAVDKMGFEEASPIQAAVIPLLLAGSDVVGQSSTGSGKTAAFALPAIERV 60

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLERG 122
           +    +++  + LIL PTRELA QVA+   K        + + I  G  +E Q + L  G
Sbjct: 61  DT---KLKAVQVLILCPTRELAVQVAEEVNKLASFKRGVMEVPIYGGQSYERQFRALAAG 117

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A V+I TPGR++DH  RG L ++ + ++++DE DRMLDMGF   I++I   VP  RQ+L 
Sbjct: 118 AQVVIGTPGRVMDHMERGTLKLDKLSMVILDECDRMLDMGFRDDIEHILKSVPEQRQSLF 177

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++ +   F+ NP  +++ T   +A  +       +    +    +   L   
Sbjct: 178 FSATMPREIRDMISRFIPNPAWVKIETQMQSAPQV---DQVYFEVDRRSKLEVLTRLIDL 234

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  + GIIFC+ K  V  L  +L  +G++   +HG+I Q  R + +  FK    + ++A+
Sbjct: 235 NDFRYGIIFCSTKIMVDELDENLHARGYACDRLHGDITQAQRTRTMEKFKRRGFEFLIAT 294

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+ D+  VFNFD+PN AE+Y HRIGRTGRAGR GKAFT V+  ++  + ++ +
Sbjct: 295 DVAARGLDVDDLEVVFNFDLPNDAEDYTHRIGRTGRAGRKGKAFTFVSGRELWKLQSMVR 354

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
                +           P L++++ A+ N
Sbjct: 355 FARLDIRR------ERVPSLDQVEEAREN 377


>gi|302333727|gb|ADL23920.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 506

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 136/441 (30%), Positives = 225/441 (51%), Gaps = 14/441 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S   V ++   G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +  ++LIL PTRELA QVA+   ++ +   + V  + GG+P E Q K L++
Sbjct: 63  KVVG----KQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L  + I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     F     +  K           
Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFT--NFLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 237 VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 297 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
               +K       +S+L PP  K ++ Q         +    +     +    S +    
Sbjct: 357 DANGRK-------MSALRPPHRK-EVLQAREDDIKEKVENWMSKESESRLKRISTELLNE 408

Query: 422 LKESEKISKLQQDIQENDADS 442
             + + ++ L Q++ E + + 
Sbjct: 409 YNDVDLVAALLQELVEANDEV 429


>gi|229069971|ref|ZP_04203249.1| ATP-dependent RNA helicase [Bacillus cereus F65185]
 gi|228713171|gb|EEL65068.1| ATP-dependent RNA helicase [Bacillus cereus F65185]
          Length = 458

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 141/410 (34%), Positives = 230/410 (56%), Gaps = 11/410 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ + IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDSESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K  V  L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKLRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           EK +   +     +     P ++++D       +       ++   D R+
Sbjct: 360 EKTLGAPIQREIIE----QPKIKRVDENGKPVPKPAPKKSGQNRQRDSRE 405


>gi|253731082|ref|ZP_04865247.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|297210100|ref|ZP_06926493.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300910462|ref|ZP_07127914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|304379262|ref|ZP_07362001.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|253725209|gb|EES93938.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|296885300|gb|EFH24240.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300888304|gb|EFK83495.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|304342121|gb|EFM08021.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312437505|gb|ADQ76576.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|320140748|gb|EFW32600.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143723|gb|EFW35500.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 517

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 136/441 (30%), Positives = 225/441 (51%), Gaps = 14/441 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S   V ++   G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 14  NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +  ++LIL PTRELA QVA+   ++ +   + V  + GG+P E Q K L++
Sbjct: 74  KVVG----KQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L  + I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 130 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 189

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     F     +  K           
Sbjct: 190 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFT--NFLD 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 248 VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVA 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 308 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 367

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
               +K       +S+L PP  K ++ Q         +    +     +    S +    
Sbjct: 368 DANGRK-------MSALRPPHRK-EVLQAREDDIKEKVENWMSKESESRLKRISTELLNE 419

Query: 422 LKESEKISKLQQDIQENDADS 442
             + + ++ L Q++ E + + 
Sbjct: 420 YNDVDLVAALLQELVEANDEV 440


>gi|237807827|ref|YP_002892267.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237500088|gb|ACQ92681.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 416

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 157/419 (37%), Positives = 225/419 (53%), Gaps = 5/419 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL   ++  +   GY   TPIQ   IP VL  HDV   AQTGTGKTA+F LP++
Sbjct: 1   MSFSTLGLHSDLLAVIDTLGYQTATPIQKAAIPEVLAGHDVMAGAQTGTGKTAAFALPLI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                     +  R L+L PTRELA QV  +F KY +   L   +  GG     Q   L 
Sbjct: 61  QRHLVRDTSEKAIRVLVLTPTRELAQQVHQSFVKYSQGLGLNSVVAYGGASINPQIDALN 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVL+ TPGR+L+   +  + ++ +E LV+DEADRMLDMGFI  I+ I   +P TRQT
Sbjct: 121 KGCDVLVATPGRLLELAFKELIDLSTVETLVLDEADRMLDMGFIVDIERILKRLPETRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT  D++  +S+  L+ PK IEV   ++ A  IE  F     Q             
Sbjct: 181 LFFSATFNDDVFSLSKTILKQPKLIEVAERNAMAAKIEQRFYEVDNQRKAGLVAYL---I 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  +IF   K+ V  L   LEK G S  A+HG+  Q +R + L  FK G ++ +V
Sbjct: 238 GSKNWQQVLIFTRTKQAVDELAKELEKDGISAAAVHGDKSQGARDRGLEEFKTGQVRALV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + +V N+++P  AE+YIHRIGRTGRAG+ G A +LV+ ++   ++ +
Sbjct: 298 ATDVAARGLDIQQLQYVINYELPYNAEDYIHRIGRTGRAGQAGLAVSLVSNKEKYLLEDV 357

Query: 361 EKLIEKK--VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           EKL  +   + W+ G   +L    E       +  +         +G ++ K     ++
Sbjct: 358 EKLTGEHFILQWMEGFEPNLTAQEEASSTKSKSSKKTLRAKALGQSGNNKAKTGKPRRR 416


>gi|195572651|ref|XP_002104309.1| GD18514 [Drosophila simulans]
 gi|194200236|gb|EDX13812.1| GD18514 [Drosophila simulans]
          Length = 713

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 127/405 (31%), Positives = 207/405 (51%), Gaps = 19/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           FA+    P ++  +   G+ KP+PIQ +  P++LQ HD+ GIAQTGTGKT +F+LP M+ 
Sbjct: 293 FAEY---PDMLGEITKMGFPKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIH 349

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKLE 120
              +   R       +L         +    E    ++    A+ + G      Q   LE
Sbjct: 350 TEYQSTPRGTRGGANVLVLAPTRELALQIEMEVNKYSFRGMKAVCVYGGGDRNMQISDLE 409

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA+++ICTPGR+ D      + ++ I  LV+DEADRMLDMGF P I+ +   +   RQT
Sbjct: 410 RGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQT 469

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT    ++++++++++NP ++ V +    A       +        K   +   ++
Sbjct: 470 IMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIKLMEDDMAKFNTITSFVK 529

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       IIFC +K    +L   L   GF    IHGN DQ  R + +++ K G ++++V
Sbjct: 530 NMSDTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILV 589

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + +   +ED      +
Sbjct: 590 ATDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGRAGRQGTSISFFTREDWGMAKEL 649

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
             ++++    +  +L              HN AR+   +  K   
Sbjct: 650 IDILQEAEQEVPDEL--------------HNMARRFKAMKDKRAA 680


>gi|254284787|ref|ZP_04959754.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           AM-19226]
 gi|150425572|gb|EDN17348.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           AM-19226]
          Length = 452

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 123/394 (31%), Positives = 189/394 (47%), Gaps = 6/394 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR LIL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 65  HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG   ++ TPGR+ DH +   L +  +E LV+DEADRMLD+GF   ++ I +     R+
Sbjct: 125 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D             +   +     + E  +         +      L   +
Sbjct: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRI 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  IIF   + +   L   L +      A+ GN++Q  R  I+  F+    +++
Sbjct: 245 LADAEYRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQTQRNTIMGQFERAVFKIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDIP V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D +    
Sbjct: 305 VTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKR 364

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKIDIA 388
           +E  +++++ +     L G    L P   K   A
Sbjct: 365 VEAFLQQEIQFEVLAGLEGKFKGLKPRQAKPKAA 398


>gi|15925071|ref|NP_372605.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927656|ref|NP_375189.1| hypothetical protein SA1885 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283733|ref|NP_646821.1| hypothetical protein MW2004 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486874|ref|YP_044095.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57650754|ref|YP_186888.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161548|ref|YP_494683.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195982|ref|YP_500795.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148268533|ref|YP_001247476.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394597|ref|YP_001317272.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus JH1]
 gi|151222197|ref|YP_001333019.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156980397|ref|YP_001442656.1| hypothetical protein SAHV_2066 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161510293|ref|YP_001575952.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253316240|ref|ZP_04839453.1| putative helicase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006870|ref|ZP_05145471.2| putative helicase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257793840|ref|ZP_05642819.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9781]
 gi|258407008|ref|ZP_05680158.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9763]
 gi|258422029|ref|ZP_05684946.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9719]
 gi|258433601|ref|ZP_05688674.1| ATP-dependent RNA helicase [Staphylococcus aureus A9299]
 gi|258440496|ref|ZP_05690666.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258445704|ref|ZP_05693882.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A6300]
 gi|258450158|ref|ZP_05698253.1| ATP-dependent RNA helicase [Staphylococcus aureus A6224]
 gi|258453208|ref|ZP_05701199.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus A5948]
 gi|258453387|ref|ZP_05701369.1| ATP-dependent RNA helicase [Staphylococcus aureus A5937]
 gi|262049250|ref|ZP_06022125.1| hypothetical protein SAD30_0461 [Staphylococcus aureus D30]
 gi|262052494|ref|ZP_06024692.1| hypothetical protein SA930_0070 [Staphylococcus aureus 930918-3]
 gi|269203717|ref|YP_003282986.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282895275|ref|ZP_06303488.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8117]
 gi|282911647|ref|ZP_06319446.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282923070|ref|ZP_06330755.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9765]
 gi|282929553|ref|ZP_06336950.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A10102]
 gi|284025116|ref|ZP_06379514.1| putative helicase [Staphylococcus aureus subsp. aureus 132]
 gi|294850566|ref|ZP_06791293.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9754]
 gi|295407012|ref|ZP_06816814.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8819]
 gi|296275711|ref|ZP_06858218.1| putative helicase [Staphylococcus aureus subsp. aureus MR1]
 gi|297246745|ref|ZP_06930562.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8796]
 gi|81648913|sp|Q6G7M9|Y1985_STAAS RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAS1985
 gi|81694077|sp|Q5HEB9|Y2072_STAAC RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
           SACOL2072
 gi|81704263|sp|Q7A0D2|Y2004_STAAW RecName: Full=Probable DEAD-box ATP-dependent RNA helicase MW2004
 gi|81705333|sp|Q7A4G0|Y1885_STAAN RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SA1885
 gi|81781186|sp|Q99SH6|Y2081_STAAM RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAV2081
 gi|122538977|sp|Q2FWH5|Y2316_STAA8 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
           SAOUHSC_02316
 gi|123484971|sp|Q2FF45|Y2037_STAA3 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
           SAUSA300_2037
 gi|13701876|dbj|BAB43168.1| SA1885 [Staphylococcus aureus subsp. aureus N315]
 gi|14247854|dbj|BAB58243.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21205175|dbj|BAB95869.1| MW2004 [Staphylococcus aureus subsp. aureus MW2]
 gi|49245317|emb|CAG43792.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284940|gb|AAW37034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus COL]
 gi|87127522|gb|ABD22036.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203540|gb|ABD31350.1| ATP-dependent RNA helicase, DEAD box family, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|147741602|gb|ABQ49900.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149947049|gb|ABR52985.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150374997|dbj|BAF68257.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156722532|dbj|BAF78949.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160369102|gb|ABX30073.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257787812|gb|EEV26152.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9781]
 gi|257841341|gb|EEV65785.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9763]
 gi|257841929|gb|EEV66361.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9719]
 gi|257849332|gb|EEV73311.1| ATP-dependent RNA helicase [Staphylococcus aureus A9299]
 gi|257852565|gb|EEV76483.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257855543|gb|EEV78480.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A6300]
 gi|257856632|gb|EEV79538.1| ATP-dependent RNA helicase [Staphylococcus aureus A6224]
 gi|257859154|gb|EEV82011.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus A5948]
 gi|257864368|gb|EEV87114.1| ATP-dependent RNA helicase [Staphylococcus aureus A5937]
 gi|259159615|gb|EEW44661.1| hypothetical protein SA930_0070 [Staphylococcus aureus 930918-3]
 gi|259162615|gb|EEW47182.1| hypothetical protein SAD30_0461 [Staphylococcus aureus D30]
 gi|262076007|gb|ACY11980.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269941681|emb|CBI50088.1| putative helicase [Staphylococcus aureus subsp. aureus TW20]
 gi|282324412|gb|EFB54725.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282589032|gb|EFB94136.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A10102]
 gi|282593261|gb|EFB98258.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9765]
 gi|282762348|gb|EFC02495.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8117]
 gi|285817746|gb|ADC38233.1| Cold-shock DEAD-box protein A [Staphylococcus aureus 04-02981]
 gi|294822586|gb|EFG39028.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9754]
 gi|294968037|gb|EFG44064.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8819]
 gi|297176405|gb|EFH35677.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8796]
 gi|312830433|emb|CBX35275.1| DEAD/DEAH box helicase family protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315128752|gb|EFT84752.1| putative helicase [Staphylococcus aureus subsp. aureus CGS03]
 gi|315196987|gb|EFU27329.1| putative helicase [Staphylococcus aureus subsp. aureus CGS01]
 gi|323439203|gb|EGA96930.1| ATP-dependent RNA helicase [Staphylococcus aureus O11]
 gi|323442419|gb|EGB00048.1| ATP-dependent RNA helicase [Staphylococcus aureus O46]
 gi|329314766|gb|AEB89179.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329724041|gb|EGG60565.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329726361|gb|EGG62829.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329729332|gb|EGG65740.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 506

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 136/441 (30%), Positives = 225/441 (51%), Gaps = 14/441 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S   V ++   G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +  ++LIL PTRELA QVA+   ++ +   + V  + GG+P E Q K L++
Sbjct: 63  KVVG----KQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L  + I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     F     +  K           
Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFT--NFLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 237 VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 297 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
               +K       +S+L PP  K ++ Q         +    +     +    S +    
Sbjct: 357 DANGRK-------MSALRPPHRK-EVLQAREDDIKEKVENWMSKESESRLKRISTELLNE 408

Query: 422 LKESEKISKLQQDIQENDADS 442
             + + ++ L Q++ E + + 
Sbjct: 409 YNDVDLVAALLQELVEANDEV 429


>gi|302676323|ref|XP_003027845.1| hypothetical protein SCHCODRAFT_70659 [Schizophyllum commune H4-8]
 gi|300101532|gb|EFI92942.1| hypothetical protein SCHCODRAFT_70659 [Schizophyllum commune H4-8]
          Length = 459

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 117/371 (31%), Positives = 188/371 (50%), Gaps = 7/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L  +++  + +AG+ KP+PIQ + IP  LQR D+   A+ GTGKTA+FV+P L 
Sbjct: 41  EFENMYLRRELLMGIFEAGFEKPSPIQEEAIPKALQRRDILARAKNGTGKTAAFVIPTLQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  + +++    L+L PTRELA Q +   +  GK+  + V +  GG   +    +L  
Sbjct: 101 QVDPTKNKIQ---ALLLVPTRELALQTSQVCKILGKHMGIQVMVTTGGTTLKDDILRLNE 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL+ TPGRILD   +    ++   + V+DEAD++L   F P ++ + S +P  RQ +
Sbjct: 158 TVHVLVGTPGRILDLAGKNVADLSQCPVFVMDEADKLLSPEFAPVMEQLLSYLPNDRQVM 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F +               T+            ++       L S
Sbjct: 218 LFSATFPMIVKD----FKEKHMNNPYEINLMEELTLRGVTQYYAYVEERQKVHCLNTLFS 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S    H  + Q  R ++  +F+ G  + +V 
Sbjct: 274 KLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHDFRNGQCRNLVC 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  LV  ED  ++  IE
Sbjct: 334 SDLLTRGIDIQAVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINLVTYEDRFNLYKIE 393

Query: 362 KLIEKKVDWLN 372
           + +  ++  + 
Sbjct: 394 QELGTEIMPIP 404


>gi|254513899|ref|ZP_05125960.1| ATP-dependent rna helicase, dead box family [gamma proteobacterium
           NOR5-3]
 gi|219676142|gb|EED32507.1| ATP-dependent rna helicase, dead box family [gamma proteobacterium
           NOR5-3]
          Length = 435

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 164/373 (43%), Positives = 225/373 (60%), Gaps = 4/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M+F  LGL P +  AV D GY +PTPIQIK+IPLVL   DV   AQTGTGKTA+FVLP+ 
Sbjct: 1   MNFDTLGLLPDLAKAVNDRGYTEPTPIQIKSIPLVLDGQDVLAAAQTGTGKTAAFVLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   G A+    RTL+L PTRELAAQV  + E YG+  +L  A++ GG+  E Q   L
Sbjct: 61  QRLAFVGLAKAGQVRTLVLTPTRELAAQVHASVEAYGQYLDLRSAVVFGGVKAEPQIAAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D L+ TPGR+LD   +G +  + +E+LV+DEADRMLDMGFI  I+ I   +P  RQ
Sbjct: 121 ARGVDTLVATPGRLLDLAQQGAVDFSALEVLVLDEADRMLDMGFIHDIRRIVDQLPENRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT ++E++ ++  +L +P  +EV   +ST E ++               +     
Sbjct: 181 TLMFSATFSNEIRALAAQYLIDPVSVEVAAANSTTELVQQMAYPVDRDRKTDLLIHLLKY 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    +IFC  K     L   L   GF    IHGN  Q +R + L  FK G +QL+
Sbjct: 241 HQW---SQVLIFCRTKHGANRLTKKLLAAGFKAAPIHGNKSQNARQRALDEFKTGKLQLL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+P   ++Y+HRIGRTGRAG  G++ +L+A ED+  +  
Sbjct: 298 VATDIAARGLDINQLPEVVNFDLPCVPQDYVHRIGRTGRAGATGRSHSLLASEDLPLLQG 357

Query: 360 IEKLIEKKVDWLN 372
           IE+LI+K +  + 
Sbjct: 358 IERLIQKAIPRVQ 370


>gi|113868657|ref|YP_727146.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
 gi|113527433|emb|CAJ93778.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
          Length = 646

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 147/386 (38%), Positives = 223/386 (57%), Gaps = 21/386 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           FA LGL   ++ A+ +  Y  PTP+Q + IP  L   D+   +QTG+GKTA+F+LP    
Sbjct: 60  FATLGLDAAILRALSELNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQR 119

Query: 60  ---------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTV 103
                              ++ R     P  L+L PTRELA QV +   KYG+N   +  
Sbjct: 120 ISEMPAPQRATEPAKRMKGKRPRPSPAQPALLVLTPTRELALQVTEAAAKYGRNLRRIVC 179

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163
           A ++GG+P+  Q   L +  D+L+ TPGR+LDH + G++ ++ +++LV DEADRMLDMGF
Sbjct: 180 ASILGGMPYPKQLAALAKMPDILVATPGRLLDHIDAGRIDLSALQMLVFDEADRMLDMGF 239

Query: 164 IPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
              I  I +  P TRQTL+FSAT+   + +++   L++P+RIE+    +    IE     
Sbjct: 240 ADDIDAIVNATPATRQTLMFSATLDARIAQLASRQLRDPQRIEIAAARADQSHIEQRLHF 299

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
           T     K+       L    T+K  I+F   K++  +L   L   GFS  A+HG++ Q +
Sbjct: 300 TDDMSHKERL--LDHLLRDATLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGA 357

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L+  + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR G
Sbjct: 358 RNRTLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSG 417

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVD 369
            A  LV   D+     IE+   +++D
Sbjct: 418 TAINLVNHNDMFQWKRIERFTNQRID 443


>gi|229173149|ref|ZP_04300699.1| ATP-dependent RNA helicase [Bacillus cereus MM3]
 gi|228610326|gb|EEK67598.1| ATP-dependent RNA helicase [Bacillus cereus MM3]
          Length = 446

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 140/410 (34%), Positives = 228/410 (55%), Gaps = 11/410 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I  G     Q +KL+
Sbjct: 66  KIDPKSSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TI            +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTI---EQRVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           EK +   +     +     P ++++D       +       ++   D R+
Sbjct: 360 EKTLGAPIQREIIE----QPKIKRVDENGKPVPKPAPKKSGQNRQRDSRE 405


>gi|52425891|ref|YP_089028.1| ATP-dependent RNA helicase RhlB [Mannheimia succiniciproducens
           MBEL55E]
 gi|61214859|sp|Q65RG7|RHLB_MANSM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|52307943|gb|AAU38443.1| SrmB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 417

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 140/407 (34%), Positives = 211/407 (51%), Gaps = 6/407 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L+ KV+ A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FADLPLNAKVLEALESNGFEYCTPIQALSLPISLAGKDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +   +   PR LI+ PTRELA Q+A + E+  K   L  AL  GG  ++ Q K +E G
Sbjct: 71  LLEHPVKTNHPRALIMAPTRELAVQIAHDAERMVKTTGLKTALAYGGDGYDKQLKAIEAG 130

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           AD++I T GRI+D+  +  + +++I+++V+DEADRM D+GFI  I+ +    P  +Q L 
Sbjct: 131 ADIIIGTTGRIIDYVKQNIIALSHIQVVVLDEADRMFDLGFIKDIRYLMRKCPSPKQRLT 190

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
              + T   +     F        V       +T        +   ++    L   L  +
Sbjct: 191 LLFSATLSYKVRELAFEDMNDPEYVEV-EPLQKTGHRIKEELFYPSNEDKMPLLITLLEE 249

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  +  IIF N K     +   L   G  V  + G++ Q+ R+ +L  F +G + ++VA+
Sbjct: 250 EWPERCIIFANTKHQCEKIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGALDILVAT 309

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGL IPDV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ AIE+
Sbjct: 310 DVAARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPAIEE 369

Query: 363 LIEKKVDWLNGDLSSL-----NPPLEKIDIAQHNHARKNNPIPQKST 404
            I   +     D  SL      P   K  +   N   +N   P K  
Sbjct: 370 YIGHHIAVSQYDSDSLIRDLAKPYRLKPSLPASNRHNRNGAKPFKKR 416


>gi|238789356|ref|ZP_04633142.1| ATP-dependent RNA helicase rhlB [Yersinia frederiksenii ATCC 33641]
 gi|238722499|gb|EEQ14153.1| ATP-dependent RNA helicase rhlB [Yersinia frederiksenii ATCC 33641]
          Length = 428

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 135/418 (32%), Positives = 209/418 (50%), Gaps = 9/418 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P V+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPLVIEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                  +   +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQMTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 DKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQ-KTGHRIQEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL +F +G + 
Sbjct: 249 TLIEEEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            AIE      +     +    L+ L  P         N  R+N+   +     + RK+
Sbjct: 369 PAIETYTGHSIPVSKYNSDALLTDLPAPKRLARTRTGNGPRRNSAPRRSGAPRNNRKR 426


>gi|328555607|gb|AEB26099.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens
           TA208]
 gi|328913984|gb|AEB65580.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens
           LL3]
          Length = 479

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 135/408 (33%), Positives = 225/408 (55%), Gaps = 12/408 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  +S  +  A+    Y +PT +Q + IP  LQ+ D+   +QTG+GKTA+F +P+  
Sbjct: 3   EFKDFSISLDIARALEGLQYTEPTEVQRRVIPAALQKKDLVVKSQTGSGKTAAFGIPICE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           + +    +   P+ LIL PTRELAAQ+ ++    G+   +    + G   F+ Q  +L++
Sbjct: 63  LADWEENK---PQALILTPTRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQKTELKQ 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + V+  TPGR+LDH  +G L ++ +  +VIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 120 KSHVVCGTPGRVLDHIEKGTLPLDRLAYVVIDEADEMLNMGFIEQVEAIIQHLPKNRVTM 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ D+++K+S  ++++P+ IEV     T + IEH          +  + L + +  
Sbjct: 180 LFSATLPDDVEKLSRTYMKDPELIEVKAEGLTTKDIEH---FVTRAAEEDKSSLLRDVLI 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  K+ V+ L   L++ G+    IHG + Q  R  +++ FK G  + ++A
Sbjct: 237 TENPDSCIIFCRTKERVIQLTDELDRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLIA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++  V N+D+P   E+Y+HR GRTGRAG  G+A T V   + + ++ IE
Sbjct: 297 TDVAARGIDIENISLVINYDIPLEKESYVHRTGRTGRAGHRGRAITFVTPSESRFLNDIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             I  ++           P  ++    +   A K N  P   T    +
Sbjct: 357 TYIGFRIKKREA------PSEKETAERKAAFAEKLNARPDVKTDKSEQ 398


>gi|308175626|ref|YP_003922331.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens
           DSM 7]
 gi|307608490|emb|CBI44861.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens
           DSM 7]
          Length = 475

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 135/408 (33%), Positives = 225/408 (55%), Gaps = 12/408 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  +S  +  A+    Y +PT +Q + IP  LQ+ D+   +QTG+GKTA+F +P+  
Sbjct: 3   EFKDFSISLDIARALEGLQYTEPTEVQRRVIPAALQKKDLVVKSQTGSGKTAAFGIPICE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           + +    +   P+ LIL PTRELAAQ+ ++    G+   +    + G   F+ Q  +L++
Sbjct: 63  LADWEENK---PQALILTPTRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQKTELKQ 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + V+  TPGR+LDH  +G L ++ +  +VIDEAD ML+MGFI  ++ I   +P  R T+
Sbjct: 120 KSHVVCGTPGRVLDHIEKGTLPLDRLAYVVIDEADEMLNMGFIEQVEAIIQHLPKNRVTM 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ D+++K+S  ++++P+ IEV     T + IEH          +  + L + +  
Sbjct: 180 LFSATLPDDVEKLSRTYMKDPELIEVKAEGLTTKDIEH---FVTRAAEEDKSSLLRDVLI 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFC  K+ V+ L   L++ G+    IHG + Q  R  +++ FK G  + ++A
Sbjct: 237 TENPDSCIIFCRTKERVIQLTDELDRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLIA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++  V N+D+P   E+Y+HR GRTGRAG  G+A T V   + + ++ IE
Sbjct: 297 TDVAARGIDIENISLVINYDIPLEKESYVHRTGRTGRAGHRGRAITFVTPSESRFLNDIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             I  ++           P  ++    +   A K N  P   T    +
Sbjct: 357 TYIGFRIKKREA------PSEKETAERKAAFAEKLNARPDVKTDKSEQ 398


>gi|302038923|ref|YP_003799245.1| DEAd-box RNA helicase [Candidatus Nitrospira defluvii]
 gi|300606987|emb|CBK43320.1| DEAD-box RNA helicase [Candidatus Nitrospira defluvii]
          Length = 576

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 140/366 (38%), Positives = 209/366 (57%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   ++  +   GY +PTPIQ + IP +L+  D+ G A TGTGKTA+F LP+L  
Sbjct: 21  FAALGLEASLLTTLEALGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAAFALPLLQR 80

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +  G  +   P  L+L PTRELA QV++  ++YGK   + V  L GG     Q + L RG
Sbjct: 81  IAHGPRQ--RPTALVLVPTRELAVQVSEAVQRYGKELRIGVLALYGGQAMGPQLQALRRG 138

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +V++ TPGR LDH  R  L + +++++V+DEAD MLDMGF   +  I    P  +QT L
Sbjct: 139 VEVIVATPGRALDHLRRKTLKLADLQVVVLDEADEMLDMGFADDLDAILEQTPAGKQTAL 198

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +  ++   L+NP  + +      A          Y    +        +   
Sbjct: 199 FSATMPPRIASIARRHLKNPVDVTIAREPVKAGAAPRVQQTAYVVARQHKVSALARVLDI 258

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T K+ ++FC  +  V  +  +L  +G+   AIHG + Q  R +++  F+ G  +L+VA+
Sbjct: 259 ATPKSALVFCRTRLEVDEVTAALNGRGYRAEAIHGGMSQVQRDRVMQAFRSGQTELLVAT 318

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIP V HV N+D+P+  E Y+HRIGRTGRAGR G A T++   + + + A+E+
Sbjct: 319 DVAARGLDIPSVSHVINYDLPSSLEVYVHRIGRTGRAGREGAAMTIIEPREQRLLRAVEQ 378

Query: 363 LIEKKV 368
             + K+
Sbjct: 379 HTKAKI 384


>gi|323343824|ref|ZP_08084051.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
           ATCC 33269]
 gi|323095643|gb|EFZ38217.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
           ATCC 33269]
          Length = 626

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 131/368 (35%), Positives = 218/368 (59%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+S ++  A+ + G+  P P+Q + IP +L   +DV  +AQTGTGKTA++ +P+L
Sbjct: 3   TFEELGVSEEIRRAITELGFETPMPVQQEVIPYLLGNGNDVVALAQTGTGKTAAYGIPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++  +   +    L+L PTREL  Q+AD+   + K  N    + + G    EAQ + +
Sbjct: 63  QKIDTSKKETQA---LVLSPTRELCLQIADDLNDFSKYINGLHVVAVYGGTSIEAQIRTI 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR++D  +RG   ++++  +V+DEAD ML+MGF   I  I   +P  R 
Sbjct: 120 KRGVQIIVATPGRLIDLMHRGVAKLDSVANVVLDEADEMLNMGFSESINEIFEGIPQDRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E++K+++N+L + K I V + +  AE++ H     Y   +K   L  + +
Sbjct: 180 TLLFSATMSKEIEKIAQNYLHDAKEIVVGSRNEGAESVNH---IYYMVNAKDKYLALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIFC  K+    +   L   G++  A+HG++ Q+ R   +  F++   Q +
Sbjct: 237 VDYYPHIFAIIFCRTKRETQEIADKLIHDGYNAEALHGDLSQQQRDLTMQKFRQHMTQFL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G + +++   +   + A
Sbjct: 297 VATDVAARGLDVEDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHTRERSKMRA 356

Query: 360 IEKLIEKK 367
           IEK+I K+
Sbjct: 357 IEKVIGKQ 364


>gi|227206264|dbj|BAH57187.1| AT4G16630 [Arabidopsis thaliana]
          Length = 617

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 136/448 (30%), Positives = 212/448 (47%), Gaps = 22/448 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  ++ A    GY KPTPIQ   IPL L   D+C  A TG+GKTA+F LP L 
Sbjct: 106 TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 165

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     RV   R LIL PTRELA Q+    +   +  ++   L++GG+    Q   L  
Sbjct: 166 RLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRS 225

Query: 122 GADVLICTP-GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D+++ TP   I    N   + ++++ +L++DEADR+L  GF   I  +  L P  RQT
Sbjct: 226 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQT 285

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+E++++ +  L  P R+  +  +     +    V            +   L 
Sbjct: 286 MLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLC 345

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      IIF   K+    L       G     +HGN+ Q  R+  L  F++  +  ++
Sbjct: 346 TRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLI 405

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V N+  P   ++Y+HR+GRT RAGR G A T V   D   +  I
Sbjct: 406 ATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVI 465

Query: 361 EKLIEKK-----------------VDWLNGDLSSLNPPLEK---IDIAQHNHARKNNPIP 400
            K +  K                 +D +    S++         +  A+   A+  N + 
Sbjct: 466 AKKVGSKLKSRVIPEQSIVKWSQIIDEMEDQYSAVISAERDERALRKAEMEFAKAENMLE 525

Query: 401 QKSTGFDRRKKN-YSSQKSHIPLKESEK 427
            +   + R K+  + ++K    + ++EK
Sbjct: 526 HRDEIYARPKRTWFMTEKEKKLVAQAEK 553


>gi|222423183|dbj|BAH19569.1| AT4G16630 [Arabidopsis thaliana]
          Length = 686

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 136/448 (30%), Positives = 212/448 (47%), Gaps = 22/448 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  ++ A    GY KPTPIQ   IPL L   D+C  A TG+GKTA+F LP L 
Sbjct: 168 TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 227

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     RV   R LIL PTRELA Q+    +   +  ++   L++GG+    Q   L  
Sbjct: 228 RLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRS 287

Query: 122 GADVLICTP-GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D+++ TP   I    N   + ++++ +L++DEADR+L  GF   I  +  L P  RQT
Sbjct: 288 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQT 347

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+E++++ +  L  P R+  +  +     +    V            +   L 
Sbjct: 348 MLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLC 407

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      IIF   K+    L       G     +HGN+ Q  R+  L  F++  +  ++
Sbjct: 408 TRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLI 467

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V N+  P   ++Y+HR+GRT RAGR G A T V   D   +  I
Sbjct: 468 ATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVI 527

Query: 361 EKLIEKK-----------------VDWLNGDLSSLNPPLEK---IDIAQHNHARKNNPIP 400
            K +  K                 +D +    S++         +  A+   A+  N + 
Sbjct: 528 AKKVGSKLKSRVIPEQSIVKWSQIIDEMEDQYSAVISAERDERALRKAEMEFAKAENMLE 587

Query: 401 QKSTGFDRRKKN-YSSQKSHIPLKESEK 427
            +   + R K+  + ++K    + ++EK
Sbjct: 588 HRDEIYARPKRTWFMTEKEKKLVAQAEK 615


>gi|198463474|ref|XP_002135506.1| GA28589 [Drosophila pseudoobscura pseudoobscura]
 gi|198151271|gb|EDY74133.1| GA28589 [Drosophila pseudoobscura pseudoobscura]
          Length = 799

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 135/382 (35%), Positives = 214/382 (56%), Gaps = 3/382 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF + G    V+  +   G+ KPT IQ +  P+ L   D+ G+AQTG+GKT ++VLP +
Sbjct: 142 IDFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIALSGRDLVGVAQTGSGKTLAYVLPAV 201

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA Q+     ++G N ++    + GG P   Q + 
Sbjct: 202 VHINNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARD 261

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 262 LERGVEIVIATPGRLIDFLERGTTTLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDR 321

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCALLQQ 237
           Q L++SAT   E+++++E FL N  ++ + + + +A       V    +  K    +   
Sbjct: 322 QVLMWSATWPKEVRQLAEEFLTNYIQVNIGSLTLSANHNILQIVDVCDESEKLGKLIKLL 381

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              S +     IIF   KK V  +  ++ +QG+  CAIHG+  Q+ R  +LS+F+ G   
Sbjct: 382 SDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHS 441

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    +    
Sbjct: 442 ILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKA 501

Query: 358 DAIEKLIEKKVDWLNGDLSSLN 379
           + + +++ +    +N  L S++
Sbjct: 502 NDLIQVLREANQEINPKLLSMS 523


>gi|120538559|gb|AAI29874.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
          Length = 615

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 135/441 (30%), Positives = 220/441 (49%), Gaps = 6/441 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LKFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 154 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 213

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 214 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N  L  L                  R++     K  GF+  +   +
Sbjct: 454 SDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 513

Query: 415 SQKSHIPLKESEKISKLQQDI 435
             + +  L + +  +K Q  +
Sbjct: 514 YDRGYSNLLKRDFGAKTQNGV 534


>gi|30683736|ref|NP_193396.3| DEAD/DEAH box helicase, putative (RH28) [Arabidopsis thaliana]
 gi|75338927|sp|Q9ZRZ8|RH28_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 28
 gi|3776027|emb|CAA09214.1| RNA helicase [Arabidopsis thaliana]
 gi|110736657|dbj|BAF00292.1| RNA helicase like protein [Arabidopsis thaliana]
 gi|332658378|gb|AEE83778.1| DEAD-box ATP-dependent RNA helicase 28 [Arabidopsis thaliana]
          Length = 789

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 136/448 (30%), Positives = 212/448 (47%), Gaps = 22/448 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  ++ A    GY KPTPIQ   IPL L   D+C  A TG+GKTA+F LP L 
Sbjct: 168 TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 227

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     RV   R LIL PTRELA Q+    +   +  ++   L++GG+    Q   L  
Sbjct: 228 RLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRS 287

Query: 122 GADVLICTP-GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D+++ TP   I    N   + ++++ +L++DEADR+L  GF   I  +  L P  RQT
Sbjct: 288 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQT 347

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+E++++ +  L  P R+  +  +     +    V            +   L 
Sbjct: 348 MLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLC 407

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      IIF   K+    L       G     +HGN+ Q  R+  L  F++  +  ++
Sbjct: 408 TRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLI 467

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V N+  P   ++Y+HR+GRT RAGR G A T V   D   +  I
Sbjct: 468 ATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVI 527

Query: 361 EKLIEKK-----------------VDWLNGDLSSLNPPLEK---IDIAQHNHARKNNPIP 400
            K +  K                 +D +    S++         +  A+   A+  N + 
Sbjct: 528 AKKVGSKLKSRVIPEQSIVKWSQIIDEMEDQYSAVISAERDERALRKAEMEFAKAENMLE 587

Query: 401 QKSTGFDRRKKN-YSSQKSHIPLKESEK 427
            +   + R K+  + ++K    + ++EK
Sbjct: 588 HRDEIYARPKRTWFMTEKEKKLVAQAEK 615


>gi|32490970|ref|NP_871224.1| hypothetical protein WGLp221 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166176|dbj|BAC24367.1| deaD [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 583

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 139/373 (37%), Positives = 215/373 (57%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++LGL   ++ A+ D GY KP+PIQ K IP +L+ +DV GIAQTG+GKTA+F LP+L
Sbjct: 6   LSFSELGLKDFILLALNDLGYKKPSPIQEKCIPFLLKGYDVLGIAQTGSGKTAAFFLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++    ++++P+ +IL PTRELA Q+        K       + +  G  +  Q K L
Sbjct: 66  NNIDL---KLKLPQIIILTPTRELALQIKFACCSLSKYIKEINIIALYGGQNYSIQIKSL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +R   +++ TPGRILD  N+  L ++ I   V+DEAD ML MGFI  ++NI        Q
Sbjct: 123 KRNPQIVVGTPGRILDLLNKKYLNLSEITSFVLDEADEMLRMGFIEDVENIFLKSSKQHQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + ++++ F++ PK I +    +T   I+  +   Y              
Sbjct: 183 TILFSATMPAAIHRITKRFMKKPKEIRIKASENTRPNIKQNYWIVYGLCK---IEALLRF 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K   + +   LEK G++  +++G+++Q  R K L+ FK G + ++
Sbjct: 240 LEVEIFDAVIIFVRTKNATLEVSDVLEKNGYNSSSLNGDMNQILREKTLNRFKTGLLDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +  V N+D+P   E+YIHRIGRTGRAGR GKA   V   + K +  
Sbjct: 300 VATDVAARGLDVDRISLVINYDIPLDVESYIHRIGRTGRAGRTGKALMFVENRERKILYN 359

Query: 360 IEKLIEKKVDWLN 372
           IE+ I++K+  + 
Sbjct: 360 IERNIKEKLSQIK 372


>gi|229079638|ref|ZP_04212172.1| ATP-dependent RNA helicase [Bacillus cereus Rock4-2]
 gi|228703680|gb|EEL56132.1| ATP-dependent RNA helicase [Bacillus cereus Rock4-2]
          Length = 454

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 140/410 (34%), Positives = 228/410 (55%), Gaps = 11/410 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I  G     Q +KL+
Sbjct: 66  KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TI            +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTI---EQRVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           EK +   +     +     P ++++D       +       ++   D R+
Sbjct: 360 EKTLGAPIQREIIE----QPKIKRVDENGKPVPKPAPKKSGQNRQRDSRE 405


>gi|297589855|ref|ZP_06948495.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|297576983|gb|EFH95697.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus MN8]
          Length = 517

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 138/436 (31%), Positives = 225/436 (51%), Gaps = 17/436 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S   V ++   G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 14  NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +  ++LIL PTRELA QVA+   ++ +   + V  + GG+P E Q K L++
Sbjct: 74  KVVG----KQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L  + I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 130 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 189

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     F     +  K           
Sbjct: 190 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFT--NFLD 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 248 VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVA 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 308 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 367

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
               +K       +S+L PP  K    +   AR+++   +      +  ++   + S   
Sbjct: 368 DANGRK-------MSALRPPHRK----EVLQAREDDIKEKVENWMSKESESRLKRISTEL 416

Query: 422 LKESEKISKLQQDIQE 437
           L E   +  +   +QE
Sbjct: 417 LNEYNDVDLVAALLQE 432


>gi|294668347|ref|ZP_06733450.1| hypothetical protein NEIELOOT_00259 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309665|gb|EFE50908.1| hypothetical protein NEIELOOT_00259 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 399

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 148/376 (39%), Positives = 230/376 (61%), Gaps = 9/376 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F+ LGL  ++V A+ + GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP 
Sbjct: 6   MNPFSSLGLGQEIVSALTEQGYETPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 65

Query: 60  LTILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           L  L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+  + 
Sbjct: 66  LERLKRFATASTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDK 125

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  G ++++ T GR+LDH  +  +  + +EI+V+DEADRMLDMGFI  I+ I  ++
Sbjct: 126 QTADLRAGCEIVVATVGRLLDHVKQKNINFSKVEIVVLDEADRMLDMGFIDDIRTIMRML 185

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQTLLFSAT  + ++K++ +F+ +P++IEV   ++T   +E   +A      ++   
Sbjct: 186 PKQRQTLLFSATFAEPIRKLARDFMNSPEQIEVAAQNTTNANVEQHVIAVDTFQKRRL-- 243

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             + L     M   I+FC  K++V  +   L+++  S  AIHG+  Q++R++ LS FKEG
Sbjct: 244 -LERLIVDLDMNQVIVFCKTKQSVDQVTRDLQRREISAQAIHGDKSQQTRLETLSAFKEG 302

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            ++++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + 
Sbjct: 303 NLRVLVATDVAARGLDIAELPFVINYEMPTQPEDYVHRIGRTGRAGADGVAISLMDETEQ 362

Query: 355 KHIDAIEKLIEKKVDW 370
           K  +AI++L    +  
Sbjct: 363 KMFEAIKELTGNNIPH 378


>gi|258422918|ref|ZP_05685818.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A9635]
 gi|257846942|gb|EEV70956.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A9635]
          Length = 506

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 136/441 (30%), Positives = 225/441 (51%), Gaps = 14/441 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S   V ++   G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +  ++LIL PTRELA QVA+   ++ +   + V  + GG+P E Q K L++
Sbjct: 63  KVVG----KQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L  + I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAAQRQT 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     F     +  K           
Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFT--NFLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 237 VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 297 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
               +K       +S+L PP  K ++ Q         +    +     +    S +    
Sbjct: 357 DANGRK-------MSALRPPHRK-EVLQAREDDIKEKVENWMSKESESRLKRISTELLNE 408

Query: 422 LKESEKISKLQQDIQENDADS 442
             + + ++ L Q++ E + + 
Sbjct: 409 YNDVDLVAALLQELVEANDEV 429


>gi|77457664|ref|YP_347169.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1]
 gi|77381667|gb|ABA73180.1| ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 446

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 127/368 (34%), Positives = 197/368 (53%), Gaps = 1/368 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L          +TLIL PTRELA Q     E++ +   +   L+ GG  F+ Q   L + 
Sbjct: 62  LIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI TPGR+++  N G L +  +E+LV+DEADRMLDMGF   +Q +    P  +QT+L
Sbjct: 122 PDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTML 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT T                  +   + +            A +++    +   L + 
Sbjct: 182 FSAT-TGGSGLREMIAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQHKEQIVNWLLAN 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T +  I+F N +     +   L  Q +    +HG  DQ+ R   +   K+G ++++VA+
Sbjct: 241 ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + +IE+
Sbjct: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360

Query: 363 LIEKKVDW 370
            +++  + 
Sbjct: 361 YLKQSFER 368


>gi|49484306|ref|YP_041530.1| helicase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282904748|ref|ZP_06312622.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus C160]
 gi|282906426|ref|ZP_06314277.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282920258|ref|ZP_06327982.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus C427]
 gi|283958860|ref|ZP_06376305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|295428668|ref|ZP_06821294.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|81650664|sp|Q6GEZ3|Y2168_STAAR RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAR2168
 gi|49242435|emb|CAG41149.1| putative helicase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282316118|gb|EFB46499.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus C427]
 gi|282330376|gb|EFB59894.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282594781|gb|EFB99758.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus C160]
 gi|283789578|gb|EFC28401.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|295127338|gb|EFG56978.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|315193240|gb|EFU23638.1| putative helicase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 506

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 138/436 (31%), Positives = 225/436 (51%), Gaps = 17/436 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S   V ++   G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +  ++LIL PTRELA QVA+   ++ +   + V  + GG+P E Q K L++
Sbjct: 63  KVVG----KQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L  + I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     F     +  K           
Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFT--NFLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 237 VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 297 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
               +K       +S+L PP  K    +   AR+++   +      +  ++   + S   
Sbjct: 357 DANGRK-------MSALRPPHRK----EVLQAREDDIKEKVENWMSKESESRLKRISTEL 405

Query: 422 LKESEKISKLQQDIQE 437
           L E   +  +   +QE
Sbjct: 406 LNEYNDVDLVAALLQE 421


>gi|294942246|ref|XP_002783449.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239895904|gb|EER15245.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 463

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 130/373 (34%), Positives = 198/373 (53%), Gaps = 4/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LG+ P++  A     +  P+ IQ +TIP  LQ  D+  +A+TG+GKT +F +P++
Sbjct: 29  VTFESLGVCPELCKACDVLQWEHPSKIQEETIPYALQGRDLIALAETGSGKTGAFAIPII 88

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L       ++    +L PTREL  Q+   FE  G + NLT A ++GG+    Q   L 
Sbjct: 89  QKLLDAAPHRKLTWACVLAPTRELCVQIGQQFEGLGASINLTTATIVGGLDMVTQAMSLS 148

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   +++ +PGR++DH  N     +  I+ LV+DEADR+L M F   +  I    P  RQ
Sbjct: 149 KKPHIIVASPGRLVDHLENTKGFHLKTIKFLVMDEADRLLGMDFEDALNKIVQSCPRDRQ 208

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT+++ ++    L  P + EV      A+ +   ++       K        L
Sbjct: 209 TFLFSATMTNKVSQLQRASLTRPVKCEVARKFDVAKGLVQNYMFVPH---KHKHAYLAAL 265

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +   +   +IF +   N   +  +L   G +   +HG + Q  R+  L+ F+ GT  ++
Sbjct: 266 LAHFKLSTVMIFVDTCLNAQRMATTLRHLGHNCVCLHGKMTQTHRLGALNQFRAGTRSVL 325

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V NFDVP   E YIHR+GRT RAGR G++ TLV + DI+    
Sbjct: 326 VATDVAARGLDIPSVDVVINFDVPKNPEEYIHRVGRTARAGRTGRSVTLVTQYDIEPFQR 385

Query: 360 IEKLIEKKVDWLN 372
           IE    KK++   
Sbjct: 386 IENKQGKKMEEFP 398


>gi|212007716|gb|ACJ22452.1| putative eukaryotic translation initiation factor 4A [Porphyra
           yezoensis]
          Length = 408

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 120/362 (33%), Positives = 194/362 (53%), Gaps = 6/362 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L  +++  +   G+ KP+ IQ + I  ++Q  D    AQ+G GKTA+F + +L 
Sbjct: 52  TFDDMNLREELLRGIYAYGFEKPSAIQQRAIMPLIQNRDTIAQAQSGMGKTATFSIGVLQ 111

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE- 120
            ++    +V+    LIL PTRELA Q+    +      +++    IGG       +  + 
Sbjct: 112 NIDTSVRKVQA---LILAPTRELAQQIHKVVQTLSDFMSISCHACIGGTRVMEDVRVFQS 168

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V++ TPGR+ D   R  L   +I+   +DEAD ML  GF   I  I   +P T Q 
Sbjct: 169 ETPHVVVGTPGRVFDMIQRRALDTGSIKAFCLDEADEMLSRGFKEQIYEIFQFMPATCQV 228

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM D++ ++++ F+++P RI V     T E I+  +VA   +  K   L      
Sbjct: 229 GLFSATMPDDVLEMTQKFMRDPIRILVKKDELTLEGIKQFYVAVEREDWKLETLCDL--Y 286

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   II+ N ++ V  L   + ++ F+V ++HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 287 ETLNITQSIIYTNTRRKVEWLVAKMNERDFTVSSLHGDMDQKDRDIIMREFRTGSTRVLI 346

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   +  ED + +  I
Sbjct: 347 TTDLLARGIDVQQVSLVVNYDLPTNKENYIHRIGRSGRFGRKGVAINFITSEDARAMREI 406

Query: 361 EK 362
           E+
Sbjct: 407 EE 408


>gi|157871774|ref|XP_001684436.1| DEAD box RNA helicase [Leishmania major strain Friedlin]
 gi|68127505|emb|CAJ05468.1| putative ATP dependent DEAD-box helicase [Leishmania major strain
           Friedlin]
          Length = 389

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 189/374 (50%), Gaps = 6/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   GY +PT IQ + I   L+  DV   A +GTGKT++F + +L 
Sbjct: 18  TFEAMGLKEDLLKGMYSFGYKQPTAIQKRFIMPFLKGRDVIAQASSGTGKTSAFCVCLLQ 77

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             +      +    LIL PTRELA Q  D     G +  LT    IGG   E   ++LE 
Sbjct: 78  ACDPHTRETQA---LILSPTRELAVQTQDLCNNIGHHMGLTAYACIGGKSTEEDIRRLES 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L +N ++ LV+DEAD ML  GF   I +I  +VP  +  L
Sbjct: 135 GVHIVSGTPGRVFDMIRRKSLRVNGLKTLVLDEADEMLGKGFKAQIHDIYRMVPPLQIIL 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + +    D L+   +   +    +      +     ++          K    +   L  
Sbjct: 195 VSATLPADVLEMTEKFMTEPTSILVKRDEITVDSVKQY---FVSVDEEKNKFDVLMELYD 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+ + ++FCN +K V  L   + ++ F+V A+HG++ Q  R +I+  F+ G  ++++ 
Sbjct: 252 SLTIAHAVVFCNTRKKVEQLAKKMTREKFAVSAMHGDMPQAERDEIMRQFRNGHSRVLIT 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V ++D+P   E YIHRIGRTGR GR G A T V  ++++ +  IE
Sbjct: 312 TDLWARGIDVERVSLVLSYDLPLAREQYIHRIGRTGRMGRTGLAITFVRHDELRLLRDIE 371

Query: 362 KLIEKKVDWLNGDL 375
           +    +++ L  ++
Sbjct: 372 QFYATQIEELPANI 385


>gi|148228442|ref|NP_001082679.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Xenopus laevis]
 gi|51704021|gb|AAH80992.1| LOC398649 protein [Xenopus laevis]
          Length = 610

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 205/379 (54%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  +LD  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 84  FHQANFPQYVLDVLLDQRFKEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAMVH 143

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 144 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKTSRLKSTCIYGGAPKGPQIRDLE 203

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 204 RGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 263

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL++  +I +     +A       V    +  K   L+Q + +
Sbjct: 264 LMWSATWPKEVRQLAEDFLRDYSQINIGNLELSANHNILQIVDVCQESEKDHKLIQLMEE 323

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+    L   + + G+    IHG+  Q+ R  +L  F+ G   ++
Sbjct: 324 IMAEKENKTIIFVETKRRCDELTRRMRRDGWPAMCIHGDKSQQERDWVLCEFRTGKAPIL 383

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ D+  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    
Sbjct: 384 IATDVASRGLDVEDIKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 443

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E+    +N  L  L
Sbjct: 444 LVKVLEEANQTINPKLMQL 462


>gi|74693203|sp|Q755N4|DBP2_ASHGO RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 557

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 199/377 (52%), Gaps = 3/377 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V + G+ KPT IQ +  P+ L   D+ G+A TG+GKT S+ LP + 
Sbjct: 115 TFDEAGFPEYVLKEVKEEGFEKPTAIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIV 174

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      +    P  L+L PTRELA Q+     K+G++  +    + GG+P   Q + L
Sbjct: 175 HINAQPLLSPGDGPVVLVLAPTRELAVQIQKECSKFGRSSRIRNTCVYGGVPKSQQIRDL 234

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG ++LI TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 235 QRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 294

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+Q+++ ++L +P ++ + +    A           + + K+  L++ L 
Sbjct: 295 TLMWSATWPKEVQQLARDYLHDPIQVNIGSLELAASHTITQLGEVVSDFDKRDRLVKHLE 354

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  + II  +  K   +   S   + G+   AIHG    +     L++++ G   +
Sbjct: 355 IGSKDKDSKIIILHSTKRTCDEITSYLRQDGWPALAIHGPTPLQDIDCTLNDYRTGRSPI 414

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+ ARG+D+  +  V N+D+P   E+Y+HRIGRTGRAG  G A +   + +     
Sbjct: 415 MVATDVVARGIDVKGINFVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEANKTLGA 474

Query: 359 AIEKLIEKKVDWLNGDL 375
            +  ++ +    +  DL
Sbjct: 475 QLISIMREAKQEIPQDL 491


>gi|238784757|ref|ZP_04628760.1| ATP-dependent RNA helicase rhlB [Yersinia bercovieri ATCC 43970]
 gi|238714353|gb|EEQ06362.1| ATP-dependent RNA helicase rhlB [Yersinia bercovieri ATCC 43970]
          Length = 429

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 134/422 (31%), Positives = 212/422 (50%), Gaps = 10/422 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P V+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPLVIQALENKGFEYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFH 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                  +   +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSNPAQEGRQTNQPRALIMAPTRELAVQIHSDAESLSQITGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 DKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQ-KTGHRIQEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL +F +G + 
Sbjct: 249 TLIEEEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE      +     +    L+ L  P +++   +  +  + N  P++S       +  
Sbjct: 369 PAIETYTGHSIPVSKYNSDALLTDLPAP-KRLARTRTGNGPRRNSAPRRSGAPRNNNRKR 427

Query: 414 SS 415
            S
Sbjct: 428 PS 429


>gi|71001454|ref|XP_755408.1| RNA helicase (Dbp) [Aspergillus fumigatus Af293]
 gi|66853046|gb|EAL93370.1| RNA helicase (Dbp), putative [Aspergillus fumigatus Af293]
 gi|159129480|gb|EDP54594.1| RNA helicase (Dbp), putative [Aspergillus fumigatus A1163]
          Length = 565

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 127/398 (31%), Positives = 203/398 (51%), Gaps = 21/398 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F + G    V+  V   G+ +PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 122 NFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 181

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 182 HINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDL 241

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 242 SRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 301

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T ++SAT   E+++++ +FL +  ++ + +   +A       V   + + K+  +++ L 
Sbjct: 302 TCMWSATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLE 361

Query: 240 QSQDTMKNGIIFCNQKKN-VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   N  +     K     +   L + G+   +IHG+  Q+ R  +L+ FK G   +
Sbjct: 362 KIMENRSNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPI 421

Query: 299 MVASD------------------LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           MVA+D                        D+ D+ HV N+D PN +E+YIHRIGRTGRAG
Sbjct: 422 MVATDVASRGIGLVAIFTNALFANLNLFKDVRDITHVLNYDYPNNSEDYIHRIGRTGRAG 481

Query: 341 RHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
             G A T    E+ K    +  ++ +    ++  L+ +
Sbjct: 482 AKGTAITFFTTENSKQARDLVTILTEAKQQIDPRLAEM 519


>gi|198427069|ref|XP_002129152.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 49
           [Ciona intestinalis]
          Length = 452

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 225/448 (50%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FADLGL+  ++  + + G+ KPTPIQ   IP +LQ  D  G ++TG+GKTA+F LP+L 
Sbjct: 6   NFADLGLNEWIIQHLGNLGFNKPTPIQYNCIPPILQGKDCFGCSKTGSGKTAAFALPVLQ 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L            L+L PTRELA Q+++ F   GK  N+  ++++GG+    Q  +L++
Sbjct: 66  KL---SEDPYGIFCLVLTPTRELAYQISEQFTLIGKPINIRTSVIVGGMDIIQQAYELQK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+ D     +  +  + +   D     LD  F   +  I S +P  RQTL
Sbjct: 123 KPHIVIATPGRLADLLRSNENNVKFLVLDEADRLLDKLDGDFTNDLNLIFSSLPKERQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIE-VNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+TD L +V E   ++P   +  N  S+     +   +            + + L 
Sbjct: 183 LFSATLTDTLNEVKELSTKSPFFWQSDNKVSTVDNLDQRYILLPEHIRDGYLVYICKDLL 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   ++ +IF    KN   L   L+K GF    +H  + QR R+  LS FK    +L+V
Sbjct: 243 EKQPTRSIMIFTKTCKNCQVLGMLLQKAGFQCVVLHSLMKQRERLTALSRFKSSNTRLLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V N +VP  A+NYIHR+GRT RAGR G + TLV + DI  + +I
Sbjct: 303 ATDVAARGLDIPVVQVVINHNVPGLAKNYIHRVGRTARAGRSGISITLVTQFDIHRVQSI 362

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ---- 416
           E+ I  K+     D   +   L K+++      ++      +   F  +KK    +    
Sbjct: 363 EEHINTKLKEYEVDEREVLKILTKVNVM-----KRETEWVLEEQKFGEKKKTNKDKALIL 417

Query: 417 --KSHIPLKESEKISKLQQDIQENDADS 442
             K  I   +  K  K  +  +E   + 
Sbjct: 418 QGKDPITEAKKRKREKFYRIKEERKQNK 445


>gi|119774410|ref|YP_927150.1| DEAD/DEAH box helicase-like protein [Shewanella amazonensis SB2B]
 gi|119766910|gb|ABL99480.1| DEAD/DEAH box helicase-like protein [Shewanella amazonensis SB2B]
          Length = 456

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 124/390 (31%), Positives = 199/390 (51%), Gaps = 6/390 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+D  L  +++ ++   G   PTPIQ + IP+ L   D+   ++TG+GKT +F+LP +
Sbjct: 1   MQFSDFSLDKRLMQSLKHMGIETPTPIQSQAIPVALAGKDLMASSKTGSGKTLAFLLPAM 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   +A   + PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRVISSKALSKKDPRVLILLPTRELAQQVYAQLRLLVANTQYRAISVLGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGRI DH  +  L +N +E+LV+DEADRMLD+GF P ++ I +     R+
Sbjct: 121 AREPHFIVATPGRIADHLQQRHLFLNGLELLVLDEADRMLDLGFAPQLKAINAAADHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   +  +          +   V   +      +       A + +    L + L
Sbjct: 181 QTLMFSATLEHGEVHELAAELLKEPEHVAIDAVHLGHGDIEQQILLADHLEHKEALLERL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S +  +  +IF   +++   L   L ++G++  A+ G + Q  R +I+ +F     +++
Sbjct: 241 LSGNNFRQVMIFTATRQDTERLATLLAEKGYNTAALSGELRQAQRNQIMDSFSREHHRIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDI +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +   
Sbjct: 301 VTTDVASRGLDISNVSLVVNFDMPKFAEEYVHRIGRTGRAGNKGTAISLVGPKDWDNFLK 360

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEK 384
           ++ L++K  ++     L      L P  E+
Sbjct: 361 VQILLQKTFEFSVLEGLEAKFKGLAPKRER 390


>gi|170725255|ref|YP_001759281.1| ATP-dependent RNA helicase SrmB [Shewanella woodyi ATCC 51908]
 gi|169810602|gb|ACA85186.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 408

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 132/387 (34%), Positives = 211/387 (54%), Gaps = 7/387 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L P ++ ++   G+ KPT IQ +TIPL + + D+   A TGTGKTASF+LP L
Sbjct: 1   MLFEDLLLDPILLESLKAMGHHKPTTIQQQTIPLAMDQRDILARAPTGTGKTASFLLPAL 60

Query: 61  TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +     R     R +IL PTRELA+Q+           +L   ++ GG+P+  Q + L
Sbjct: 61  QHIIDFPRRFSGQARVVILTPTRELASQIHRYASHLAYELDLNTVIITGGVPYAPQEEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   D+L+ TPGR++++ ++G      +EILVIDEADRMLDMGF   ++ I       +Q
Sbjct: 121 KGNVDILVATPGRLMEYLDKGLFNAEEVEILVIDEADRMLDMGFSAVVETIAIESVGRKQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT+ +       +       ++V   +  +E  +       A   +    L   +
Sbjct: 181 TMLFSATL-EGSDVGRFSHQLLTDPVKVEAEAPRSEKAKIHQWIHIADDKEHKFKLLCSI 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  +  I+F   ++ V +L   L++ G     + G+++Q+ R + L  F +G + ++
Sbjct: 240 LQQEETQRAIVFVKTREAVASLEGMLQRVGIPCSYMRGDMEQKQRFQALGRFTKGEVNVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+ D+ HV NFD+P  A+ Y+HRIGRTGRAG  G A +LV   DI+ +  
Sbjct: 300 LATDVAARGIDVEDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDIRVVGK 359

Query: 360 IEKLIEKK-----VDWLNGDLSSLNPP 381
           IE+ +++      +  L        PP
Sbjct: 360 IERYMDQPLKRRFIKDLRPKNKEAKPP 386


>gi|78213173|ref|YP_381952.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
 gi|78197632|gb|ABB35397.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
          Length = 607

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 134/371 (36%), Positives = 212/371 (57%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G S  ++  + D GY +P+PIQ    P ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 59  FAGFGFSEALLRTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 118

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLER 121
           LE G+   + P+ L+L PTRELA QVA++F+ Y   +     L + G   F +Q   L R
Sbjct: 119 LESGQ---KTPQALVLAPTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQISALRR 175

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR++DH  +G L  + +  LV+DEAD ML MGFI  ++ I   +P  RQ +
Sbjct: 176 GVDVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQRQVV 235

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++S+ +L++P  + + T     + I    +     +        Q +  
Sbjct: 236 LFSATMPPEIRRLSKRYLKDPAEVTIRTKDQEGKRIRQRSITVPMPHK---LEALQRVLD 292

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  IIF   K   + +  +LE  G  V  ++G++ Q  R + +   + G++ ++VA
Sbjct: 293 ACGSEGVIIFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVA 352

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N+D+P  +E Y+HRIGRTGRAGR G+A   V   + + I  +E
Sbjct: 353 TDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPRERRFIRNLE 412

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 413 RATGQPIEAME 423


>gi|73997167|ref|XP_534885.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
           isoform 1 isoform 1 [Canis familiaris]
          Length = 456

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 144/404 (35%), Positives = 222/404 (54%), Gaps = 7/404 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++  +  A    G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 25  TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++GGI   +Q+  L +
Sbjct: 85  ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K      ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++          SK        + 
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ---YYLFIPSKFKDTYLVYIL 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           E LI KK+         +    E++  AQ     +     +K  
Sbjct: 379 EHLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREHGEKKK 422


>gi|319407442|emb|CBI81093.1| ATP-dependent RNA helicase [Bartonella sp. 1-1C]
          Length = 415

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 150/413 (36%), Positives = 228/413 (55%), Gaps = 9/413 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS  +V  +  AG  KP  IQ K IP++L+ HD+ GIAQTG+GKT +F LP+L  
Sbjct: 9   FTELGLSSILVKNLFSAGMNKPKFIQEKAIPVMLKGHDILGIAQTGSGKTLAFSLPILNR 68

Query: 63  LEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     +         IL PTRELA Q+ +      K  +L+  L++GG+    Q +++ 
Sbjct: 69  ILTLGDKRYPKTARALILVPTRELAIQIEEAISAIAKGTHLSTCLIVGGMSRLTQIRRMA 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+LI T GR++D      + ++     ++DEADRMLDMGFI  ++ I   +    QT
Sbjct: 129 KGVDILIATTGRLMDLIRSKYVDLSQSRFFILDEADRMLDMGFINDVRQIARFLNEKCQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ E+  +++N L+ P +IEV +  +TA  I            K          
Sbjct: 189 ALFSATMSKEVNVLADNLLRKPVKIEVVSQGTTAAEITQVLYCVSTSEKKSILSKLL--- 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   + + I+F   K    ++  SL K G+SV  IHGN  Q +R   L NF+EG ++++V
Sbjct: 246 TNPALTSVIVFIRTKHGADSVARSLTKAGYSVATIHGNKSQNARQCALKNFREGLVRVLV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+DIP + HV N+D+P+ AE+Y+HRIGRTGR G  G A T   ++ +   + A
Sbjct: 306 ATDIAARGIDIPGISHVINYDLPDNAESYVHRIGRTGRNGASGDAITFFDEKIEQVRLCA 365

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           IE+LI  K+      L    P  EK+  ++    ++         GF  RK++
Sbjct: 366 IERLIRMKLKRKEIPLQ-FAPLPEKL--SEPTIYKREGSKKHHLKGFKGRKRS 415


>gi|254491416|ref|ZP_05104595.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxidans
           DMS010]
 gi|224462894|gb|EEF79164.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxydans
           DMS010]
          Length = 402

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 147/375 (39%), Positives = 211/375 (56%), Gaps = 3/375 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   ++ A  D GY +PT IQ + IPL+L   DV   A TGTGKTA+FVLP+L
Sbjct: 1   MQFEDLMLDESLLLAASDKGYKEPTLIQQEAIPLLLAGEDVLACAATGTGKTAAFVLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L       R+P+ LIL PTRELA Q+       GK     +A++ GG    AQ   LE
Sbjct: 61  QKLLDEPNHGRLPKALILAPTRELAFQIQHVIHHLGKANQPHIAMVTGGQAPTAQLAYLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D++I TPGR+L+     +  ++ IE +VIDEADRMLDMG  P + N+ + +    QT
Sbjct: 121 NGCDIVIATPGRLLNLVENEQADLSEIEFVVIDEADRMLDMGQGPDVANVLATITTAFQT 180

Query: 181 LLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LFSAT+    ++  +   L N  RIEV+  +  A+ +         +  K+   L   +
Sbjct: 181 SLFSATLAGSGVELFANALLPNASRIEVDAANQYAQQVSQQVYLADNREHKQA--LLAAV 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   ++ +IFCN+K+    +   L+ Q  S   +HG+ +Q  R +    F++G ++ +
Sbjct: 239 IKQTDCESALIFCNKKERAEEVSAFLQSQNISAQVVHGDFNQADRRERTRKFRQGKVKAL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+P V HV N+DVP R + YIHR+GRTGRAG+ G A  LV   D K++  
Sbjct: 299 VATDVAARGLDLPQVSHVINYDVPFRGDIYIHRVGRTGRAGQTGTAVNLVEPHDHKNLQR 358

Query: 360 IEKLIEKKVDWLNGD 374
           +E  I + +  L   
Sbjct: 359 VEHHIGQPLPVLKMK 373


>gi|157377241|ref|YP_001475841.1| ATP-dependent RNA helicase RhlB [Shewanella sediminis HAW-EB3]
 gi|189040083|sp|A8G0U0|RHLB_SHESH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|157319615|gb|ABV38713.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 435

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 142/429 (33%), Positives = 230/429 (53%), Gaps = 11/429 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  L  ++  A+ ++G+   TPIQ  ++P++LQ+ D+ G AQTGTGKT +F++    
Sbjct: 10  KFADFSLQTEIKTALNESGFEYCTPIQALSLPILLQKKDIAGQAQTGTGKTLAFLVATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      ++  PR +I+ PTRELA Q+A + +   K+  L V ++ GG  +E Q K
Sbjct: 70  HLLTTPIPEGRQLNQPRAIIMAPTRELAIQIAKDADLLAKHTGLKVGIVYGGESYEVQRK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+LI T GRI+D+  +G + ++ I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLDKGVDILIGTTGRIIDYVRQGIINVSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +  L    + T  ++     +    +  +V    +   +        Y    +K   L  
Sbjct: 190 KSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMDEK-MRLLL 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +D     I+F N K +   L   LE  G  V  + G++ Q+ R++IL  F EG + 
Sbjct: 249 TLLEEDWPDKAIVFSNTKHSCEKLWSWLEGDGHRVGLLTGDVPQKKRIRILELFTEGKLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG+ G + +   +E   ++
Sbjct: 309 VLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGVSVSFACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF--DRRKKNYSS 415
            AIE+ I   +   N D  +L   L+ I  A     RK+N  PQ  +G     R  N ++
Sbjct: 369 PAIEEYINHTIPVTNYDSEAL---LDDIP-APVRVHRKHNSRPQGRSGSGGKPRSGNRNA 424

Query: 416 QKSHIPLKE 424
            + H   + 
Sbjct: 425 PRRHDKTRR 433


>gi|114771133|ref|ZP_01448573.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium
           HTCC2255]
 gi|114548415|gb|EAU51301.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium
           HTCC2255]
          Length = 531

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 165/430 (38%), Positives = 239/430 (55%), Gaps = 12/430 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  ++V A+   GY  PTPIQ + IP VL   D+ G+AQTGTGKTA+F LP++  
Sbjct: 105 FSKLGLDAEIVKALGFLGYTLPTPIQSQAIPAVLNSKDLVGLAQTGTGKTAAFALPLIQQ 164

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     + R  R +IL PTRELA Q+ + F  +GK   L     IGG P   Q + L 
Sbjct: 165 LLMNPIAIKGRSARAIILSPTRELALQIHEAFVSFGKRLPLNFTHAIGGAPIRKQMRDLS 224

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+ D  ++  L ++  + LV+DEAD+MLD+GF+P ++ I S V   RQT
Sbjct: 225 KGVDILVATPGRLEDLVDQKGLRLDETKFLVLDEADQMLDIGFLPAVKRIISKVNKDRQT 284

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM+ E++K++E +L +P ++ V   +ST + IE   +    Q      L  Q + 
Sbjct: 285 LLFSATMSKEIKKLTETYLTDPVQVSVTPENSTVDKIEQSLMHLSKQNK---GLALQRII 341

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S +  K  I+F   K     L   L  Q     AIHGN  Q  R + L +FK+G   +++
Sbjct: 342 SANPKKRVIVFSRTKHGSDKLVKWLGTQNIGADAIHGNKSQGQRQRALDDFKKGKTYILI 401

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DIP +  V NFD+PN  E+Y+HRIGRT RAG  GKA    A ++ K +  I
Sbjct: 402 ATDIAARGIDIPGIEIVINFDLPNVPESYVHRIGRTARAGADGKAIAFCAPDEHKQLWDI 461

Query: 361 EKLIEKKVD--WLNGDLSSLNPPLEKIDIAQH----NHARKNNPIPQKSTGFDRR-KKNY 413
           EK+I+  +    + G   +L P  EK    +     N  R + P    S    +  KK +
Sbjct: 462 EKVIKMDIPVVEMEGLTQNLIPNFEKPAPRRRGGGANSKRGSGPRDNNSRNNSKSGKKPF 521

Query: 414 SSQKSHIPLK 423
               +  P +
Sbjct: 522 RGGGNKSPRR 531


>gi|2500516|sp|Q40470|IF4A7_TOBAC RecName: Full=Eukaryotic initiation factor 4A-7; Short=eIF-4A-7;
           AltName: Full=ATP-dependent RNA helicase eIF4A-7
 gi|485949|emb|CAA55738.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 195/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+         + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 101 QLDYSLVE---CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V K+D + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVIKDDERMLSDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ L  +++ L
Sbjct: 396 RFYNVVIEELPANVADL 412


>gi|332529740|ref|ZP_08405694.1| DEAD/DEAH box helicase-like protein [Hylemonella gracilis ATCC
           19624]
 gi|332040761|gb|EGI77133.1| DEAD/DEAH box helicase-like protein [Hylemonella gracilis ATCC
           19624]
          Length = 506

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 166/447 (37%), Positives = 245/447 (54%), Gaps = 11/447 (2%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
           ADL L+  +  AV D GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L  L
Sbjct: 21  ADLTLAEPLKRAVADMGYETMTPIQAQAIPVVLAGQDVMGAAQTGTGKTAAFSLPLLQRL 80

Query: 64  EKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            K       P        +L PTRELA QVA   + Y K  +L  A++ GG+  + Q  +
Sbjct: 81  LKHENASTSPARHPVRALVLLPTRELADQVAQQVKMYAKYTHLRSAVVFGGMDMKPQTLE 140

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P  R
Sbjct: 141 LKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSHLPKQR 200

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            TLLFSAT + E+++++ ++LQNP  IEV   ++TA T+E  F +      +      + 
Sbjct: 201 TTLLFSATFSPEIKRLASSYLQNPITIEVARSNATATTVEQHFYSVGEDDKRHA---LRQ 257

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +K   +F N K     L  +LE+ G    A+HG+  Q  R+K L  FK+G + L
Sbjct: 258 VLRDKNLKQAFVFVNSKLGCARLARALERDGLKTAALHGDKSQDERLKALDAFKKGEVDL 317

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V +D+AARGLDI DV  VFN D+P  AE+Y+HRIGRTGRAG  G A + V+  D+K + 
Sbjct: 318 LVCTDVAARGLDIKDVPAVFNIDIPFNAEDYVHRIGRTGRAGALGVAVSFVSPRDVKSVA 377

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLE---KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            IEKLI+ K++    +     P +    + +     + ++      +  G +R ++    
Sbjct: 378 EIEKLIKTKIEIEPIEFEEDRPDIRRQGRFNEGHRLYDQEGRRDDGRGVGVERPRERVEG 437

Query: 416 QKSHIPLKESEKISKLQQDIQENDADS 442
                        S       +   ++
Sbjct: 438 NSERRRESRPAPRSAPADPFFDRPYEA 464


>gi|307204462|gb|EFN83169.1| ATP-dependent RNA helicase DDX42 [Harpegnathos saltator]
          Length = 770

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 148/453 (32%), Positives = 232/453 (51%), Gaps = 4/453 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F   G    ++ A+    + +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 255 SFGHFGFDDALMKAIRKNEFTQPTPIQAQAVPAALNGRDIIGIAKTGSGKTAAFIWPMLV 314

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + ++       P  LIL PTREL+ Q+    +K+GK YN+ V    GG     Q+K L
Sbjct: 315 HIMDQRELKAGDGPIGLILAPTRELSQQIYQEAKKFGKVYNIQVCCCYGGGSKWEQSKAL 374

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA++++ TPGR++D        +  +  LV+DEADRM DMGF P +++I + V   RQ
Sbjct: 375 ESGAEIVVATPGRMIDLVKMKATNLIRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQ 434

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    ++K++ + L +P RI           +    +  +    K    L Q L
Sbjct: 435 TLLFSATFKKRVEKLARDVLMDPVRIVQGDVGEANTDVTQHVIMFHNPGGKW-NWLLQNL 493

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               +  + +IF  +K N   L ++L+ + F V  +HG++DQ  R K+++ FK+  +  +
Sbjct: 494 VEFLSAGSLLIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQIERNKVITAFKKKDVSTL 553

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TLV ++D +    
Sbjct: 554 VATDVAARGLDIPHIKTVINYDVARDIDTHTHRIGRTGRAGEKGTAYTLVTEKDKEFSGH 613

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           + + +E     +   L  L         ++     K   I     G   R +  SS  S 
Sbjct: 614 LVRNLEGANQEVPKSLMDLAMQSAWFRKSRFKGG-KGKSINVGGAGLGFRGRPDSSGLSG 672

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAF 452
              + S+ IS + + ++ +   S        AF
Sbjct: 673 SSSQTSKDISDVVKKLERHGPGSDRLSAMKAAF 705


>gi|282917430|ref|ZP_06325183.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus D139]
 gi|282318632|gb|EFB48989.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus D139]
          Length = 506

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 136/441 (30%), Positives = 225/441 (51%), Gaps = 14/441 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S   V ++   G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +  ++LIL PTRELA QVA+   ++ +   + V  + GG+P E Q K L++
Sbjct: 63  KVVG----KQGVQSLILAPTRELAMQVAERLREFSRGQGVQVVTVFGGMPIERQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L  + I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     F     +  K           
Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFT--NFLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 237 VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 297 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
               +K       +S+L PP  K ++ Q         +    +     +    S +    
Sbjct: 357 DANGRK-------MSALRPPHRK-EVLQAREDDIKEKVENWMSKESESRLKRISTELLNE 408

Query: 422 LKESEKISKLQQDIQENDADS 442
             + + ++ L Q++ E + + 
Sbjct: 409 YNDVDLVAALLQELVEANDEV 429


>gi|2370593|emb|CAA73168.1| translation initiation factor eIF4A II [Xenopus laevis]
          Length = 413

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 122/379 (32%), Positives = 197/379 (51%), Gaps = 7/379 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 39  SFDDMSLSESLLRGIYAYGFEKPSAIQQRAIMPCIKGYDVIAQAQSGTGKTATFAISILQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E      +    L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 99  QIELDMKATQA---LMLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQS 155

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   V      
Sbjct: 156 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKVLSMNAQ 215

Query: 181 LLF-SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           ++  SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L     
Sbjct: 216 VVLLSATMPADVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL-- 273

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ +++
Sbjct: 274 YETLTITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR G  G A  +V ++D + +  
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGWKGVAINMVTEDDKRTLKD 393

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE      V+ +  +++ L
Sbjct: 394 IETFYNTTVEEMPMNVADL 412


>gi|311281534|ref|YP_003943765.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308750729|gb|ADO50481.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
          Length = 421

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 137/413 (33%), Positives = 202/413 (48%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P V+ A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPTVIEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E       L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAMENRQVNQPRALIMAPTRELAVQIHADAEPLASASGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLENGVDILIGTTGRLIDYARQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V                 Y    +K   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNDEK-MRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLLEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSVSLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    ++ L  P         N  R+   P  ++ +G
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPFRLTRTRPGNGPRRTGAPRNRRRSG 421


>gi|326773277|ref|ZP_08232560.1| cold-shock DEAD box protein A [Actinomyces viscosus C505]
 gi|326636507|gb|EGE37410.1| cold-shock DEAD box protein A [Actinomyces viscosus C505]
          Length = 865

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 145/412 (35%), Positives = 228/412 (55%), Gaps = 19/412 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   ++ AV D G+V PT IQ + IP++L   DV G+AQTGTGKTA+F LP+L
Sbjct: 162 ITFADLGLPGDLLKAVTDMGFVTPTAIQKEAIPVLLAGRDVVGVAQTGTGKTAAFGLPLL 221

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++    R  + + L+L PTRELA Q A+              + +  G P+  Q   L
Sbjct: 222 DAVDS---RDNVVQALVLAPTRELALQSAEAITDMAARSRGLEVVAVYGGAPYGPQIGAL 278

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA V++ TPGR++D  ++G L ++++   V+DEAD ML MGF   ++ I   +P  R+
Sbjct: 279 KGGAQVVVGTPGRVIDLIDKGALQLDDVRYFVLDEADEMLRMGFAEDVETIAESLPADRR 338

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM   +Q V+   L  P ++EV+ P+ST  T+   +        +        +
Sbjct: 339 TALFSATMPPAIQAVARQHLHEPVQVEVSRPASTVATVHQTYAVVPF---RHKIGAVSRV 395

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  I+F   K    ++   L  +G    AI G++ QR R +++   + GT+ ++
Sbjct: 396 LAVTDAEAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVL 455

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +G V NFDVP  AE Y+HRIGRTGRAGRHG+A T +  ++   +  
Sbjct: 456 VATDVAARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQ 515

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           IE+L   +++ +     +L  P    D+++H    +   +  K+     R +
Sbjct: 516 IERLTGSRLEEI-----TLPSPA---DVSEH----RARKLLSKAAARHERGR 555


>gi|158320253|ref|YP_001512760.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           oremlandii OhILAs]
 gi|158140452|gb|ABW18764.1| DEAD/DEAH box helicase domain protein [Alkaliphilus oremlandii
           OhILAs]
          Length = 529

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 154/385 (40%), Positives = 233/385 (60%), Gaps = 9/385 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL +   ++  +L+ GY  PTPIQ + IP +    D+ G AQTGTGKTA+F +PML
Sbjct: 5   IQFQDLNIKKDILKGILELGYEVPTPIQAQAIPRLYAGEDIIGQAQTGTGKTAAFGIPML 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             +   +   + P+ LIL PTREL+ QVAD   K+ K  +   ++ I  G P + Q K L
Sbjct: 65  EKINPQQ---KTPQVLILAPTRELSMQVADEIRKFSKYLSGAKSIAIYGGQPIDRQIKAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G ++++ TPGRILDH  R  L ++ I  LV+DEAD+MLDMGF   I+ I    P  RQ
Sbjct: 122 KQGVNIVVGTPGRILDHIRRKTLRLDQIVGLVLDEADQMLDMGFSDDIEAILQETPSERQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++FSATM  E++++++ +++NPK+++V     T   I   +                  
Sbjct: 182 TVMFSATMPKEIEEIAKKYMKNPKKVKVVHKELTVPKISQYYFEVRPHEKLDALCRIL-- 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  + GIIFC  KK V  L  +L+ +G+SV  IHG++ Q  R +++  F++GT+ LM
Sbjct: 240 -DMENSELGIIFCRTKKGVDELVENLQSRGYSVEGIHGDLKQSQRDRVMKKFRDGTLDLM 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+ DV  V N+DVP   E Y+HRIGRTGRAGR G A+TLV  + I+ + A
Sbjct: 299 IATDVAARGIDVDDVDLVVNYDVPEDFEYYVHRIGRTGRAGREGLAYTLVTGKQIRTLKA 358

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           +E  I+ K+      + ++N  +EK
Sbjct: 359 LEAYIKGKIKRKP--IPTINDIVEK 381


>gi|114765123|ref|ZP_01444268.1| putative ATP-dependent RNA helicase protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114542527|gb|EAU45553.1| putative ATP-dependent RNA helicase protein [Roseovarius sp.
           HTCC2601]
          Length = 430

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 142/375 (37%), Positives = 219/375 (58%), Gaps = 5/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGL+P +  A+   G+ +PTPIQ + IPL L+ HDV G+AQTGTGKT +F LP++ 
Sbjct: 3   DFDMLGLAPTLSEALKRNGFSEPTPIQNQAIPLALEGHDVLGLAQTGTGKTLAFGLPLID 62

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               + G+   +  + L+L PTREL  Q+AD+  +      L V  ++GG     Q   L
Sbjct: 63  GLLAQPGKPAPKTVKALVLAPTRELVNQIADSLRQLTDGTKLRVGTVVGGQSINRQINFL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR++D  +R  + ++ +  LV+DEAD+MLDMGFI  ++ I   +   RQ
Sbjct: 123 SRGTDILVATPGRLIDLMDRKAVDLSTVRQLVLDEADQMLDMGFIHALRRIAPQLGTPRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  +++++S  +L NP+R++V+ P   A+ I                   + L
Sbjct: 183 TMLFSATMPKQMEELSSAYLTNPRRVQVSPPGKAADKITQSVHFVDKAGK---PSKLREL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +D     ++F   K     L   L   G++  +IHGN  Q  R + +  F++G I ++
Sbjct: 240 LGRDDESLTLVFARTKHGAERLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRDGDINVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V +V N+D+P   +NY+HRIGRT RAGR G+A    A ++   +  
Sbjct: 300 VATDVAARGIDIPGVAYVVNYDLPEVPDNYVHRIGRTARAGREGEAIAFCAPDEADLLRQ 359

Query: 360 IEKLIEKKVDWLNGD 374
           I+KL++  +   +GD
Sbjct: 360 IQKLMKIDIPVASGD 374


>gi|322696755|gb|EFY88543.1| ATP-dependent rRNA helicase RRP3 [Metarhizium acridum CQMa 102]
          Length = 478

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 141/416 (33%), Positives = 225/416 (54%), Gaps = 6/416 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+   +  A     Y  PTPIQ K+IP+ LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 58  TFKQLGIVDSLCEACESLNYKFPTPIQEKSIPVALQNRDIIGLAETGSGKTAAFALPILQ 117

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    L+L PTRELA Q+  +FE  G + +L  A+++GG+    Q   L +
Sbjct: 118 ALLD---KPQPLFGLVLAPTRELAHQIGQSFEALGSSISLRCAVIVGGLDMVPQAVALGK 174

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR++DH  + K      ++ LV+DEADR+LDM F P I  +   +P  R+T
Sbjct: 175 KPHIIVATPGRLVDHLEKTKGFSLRTLKYLVMDEADRLLDMDFGPAIDKLLKFIPRERRT 234

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT++ +++ +    L++P R+ V++      +     +    Q  K        L 
Sbjct: 235 YLFSATLSSKVESLQRASLRDPVRVSVSSNKYQTVSTLLQNLLVIPQMRKDTY--LIYLV 292

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++ T K+ IIF         +   L   GF    +HG + Q +R+  L+ F+ GT  ++V
Sbjct: 293 NEFTGKSTIIFTRTVWETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFRSGTRDILV 352

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V N+D+P  ++ YIHR+GRT RAG+ G A +LV + DI+    I
Sbjct: 353 ATDVAARGLDISKVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISLVTQYDIEVFQRI 412

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           E  + KK+D    +   +     +++ AQ +   +   + +K  G  +R K  S +
Sbjct: 413 EAALGKKLDIYPTEKEEVLAFQHRVEEAQRHARIEMKNLSEKRHGKGKRAKGTSKR 468


>gi|320176023|gb|EFW51092.1| ATP-dependent RNA helicase RhlB [Shigella dysenteriae CDC 74-1112]
          Length = 421

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 137/413 (33%), Positives = 206/413 (49%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV  +   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVVEVLEKKGFHDCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGAPRNRRRSG 421


>gi|254425310|ref|ZP_05039028.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335]
 gi|196192799|gb|EDX87763.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335]
          Length = 471

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 143/369 (38%), Positives = 220/369 (59%), Gaps = 5/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS   V  +   G+ +PT IQI+ IP +L  HDV G+AQTGTGKTA+F LPML 
Sbjct: 4   SFADLGLSSACVEHLTQIGFTEPTAIQIQAIPQLLSGHDVVGLAQTGTGKTAAFSLPMLE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +      V+    L+L PTRELA QV+   E +  +  L V  + GG   + Q ++L+R
Sbjct: 64  QVNPANRYVQ---ALVLTPTRELAMQVSQAMESFNTDKRLYVTSVYGGQSIDRQIQRLKR 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G+ +++ TPGRI+D   RG L+++ + I+V+DEAD ML+MGFI  ++ I S  P  RQT 
Sbjct: 121 GSQIVVGTPGRIIDLIERGGLVLDRLSIMVLDEADEMLNMGFIQDVETILSHTPDERQTA 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   +QK+S  FL++P  + V   +S+   I+         +SK        +  
Sbjct: 181 FFSATMEPAIQKLSTRFLKSPVTVSVEAKTSSTARIKQIAYTVPPGWSKPR--ALMPILE 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  ++ IIF   ++    L   L+  G S    HG++ Q  R ++L  FK+  ++ +VA
Sbjct: 239 MEDPESAIIFVRTRRTAAELTRQLQAAGHSADEYHGDLTQPQRERLLQRFKQRQVRWVVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ + D+ HV N+++P+  ++Y+HRIGRTGRAG+ G+A ++V   +   +  IE
Sbjct: 299 TDIAARGIHVDDLSHVINYELPDNLDSYVHRIGRTGRAGKEGRAVSIVMTLEKYKLSRIE 358

Query: 362 KLIEKKVDW 370
           K  +K V++
Sbjct: 359 KRFKKSVEY 367


>gi|157964817|ref|YP_001499641.1| ATP-dependent RNA helicase RhlE [Rickettsia massiliae MTU5]
 gi|157844593|gb|ABV85094.1| ATP-dependent RNA helicase RhlE [Rickettsia massiliae MTU5]
          Length = 415

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 143/422 (33%), Positives = 226/422 (53%), Gaps = 15/422 (3%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
            +  LS +++ A+      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP++   
Sbjct: 7   KNFNLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLIDSF 66

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            K +         IL PTRELA Q+     K   +Y +  A+LIGG P   Q  +L++  
Sbjct: 67  IKNKTTAL-----ILVPTRELATQIHSTLNKVTISYKINSAVLIGGEPMPKQFMQLKKNP 121

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG    ++ I   +P  RQ L+F
Sbjct: 122 KVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMF 181

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM   +  VS+ +L NP RI V   +  A  I+          S K    +   Q  +
Sbjct: 182 SATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQ----ESMHVSDKEKFSELTKQLGN 237

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
              + IIF   K++   L   L+ +  +  AIHG++ QR R +++ +F++   ++MVA+D
Sbjct: 238 REGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVATD 297

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +D+    AI++L
Sbjct: 298 VAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGYALSFISPDDVIRWHAIDRL 357

Query: 364 IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLK 423
           + K    L  +  S        +  + +  ++     +K   FD  +K      S+   +
Sbjct: 358 VNKGESTLRSEFRS------DKNNRKRSFGKRAGGDGKKFNSFDSSRKRTFDGNSYGNKR 411

Query: 424 ES 425
           + 
Sbjct: 412 KK 413


>gi|328789449|ref|XP_003251275.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Apis
           mellifera]
          Length = 452

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 142/437 (32%), Positives = 218/437 (49%), Gaps = 12/437 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+L LS  +V      G   PTPIQ   IP +L   D  G A+TG+GKT +F LP+L
Sbjct: 1   MTFAELNLSSWLVQQCTFMGLKYPTPIQQNCIPRILAGTDCIGCAKTGSGKTLAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +          L+L PTRELA Q+AD F   GK+  L   +++GG+    Q  +L 
Sbjct: 61  QKLSE---DPYGIFALVLTPTRELAFQIADQFSAIGKSIGLKKCIIVGGMDMVVQGLELS 117

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   +++ TPGR      +     +  I+ LV+DEADR+L+  F   ++ I   +P  +Q
Sbjct: 118 KHPHIVVATPGRLADHLESCNTFSLKQIKFLVLDEADRLLEGYFDDQLKTIFEALPKQKQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPS---STAETIEHCFVATYAQYSKKCALLQ 236
            LLFSATMTD L KV           E    S   +  E  +H  +            + 
Sbjct: 178 ILLFSATMTDTLHKVKHIVSNKAFIWESKDESGIATVKELNQHYVLCPRDIRDSFLVEVI 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +  ++ +   + IIF +  K+   L  +L   GF   A+H  + Q+ R+  L  FK   I
Sbjct: 238 RTFRANNKNGSIIIFTDTCKHCQILSMTLNDVGFKNVALHSMVKQKDRLAALVQFKSNHI 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++A+D+AARGLDIP V  + N  +PN  + YIHR+GRT RAG+ G A TL+   DIK 
Sbjct: 298 KILIATDVAARGLDIPTVELIINHIIPNVPKEYIHRVGRTARAGKSGMAITLITPHDIKL 357

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           + AIE  I  K+     +   +   L +I +A     ++   +    T F  +K     +
Sbjct: 358 LHAIENTIGTKLTEYKINDKEIITILTQISVA-----KREAEMKLDETNFYEKKIINKRK 412

Query: 417 KSHIPLKESEKISKLQQ 433
           K  +  K+ ++I ++ +
Sbjct: 413 KLILEGKDPDEIEEILE 429


>gi|302341870|ref|YP_003806399.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
           2075]
 gi|301638483|gb|ADK83805.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
           2075]
          Length = 573

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 159/410 (38%), Positives = 229/410 (55%), Gaps = 16/410 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLSP +  AV + G+  PTPIQ   IPL+L+  DV G AQTGTGKTA+F LP+L  
Sbjct: 18  FDQLGLSPLLTAAVTEQGFTSPTPIQTAMIPLMLEGRDVIGQAQTGTGKTAAFGLPLLHN 77

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +  G   V   + L+L PTRELA QVA+  + YG+     V  + GG P+  Q  +L +G
Sbjct: 78  ISPG---VGQAQALVLAPTRELAIQVAEALQGYGRKMGARVMAVYGGAPYGLQISRLRKG 134

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR+LD   +  L ++ +E +VIDEAD ML MGFI  IQ I    P  RQT L
Sbjct: 135 VDVVVGTPGRVLDLIGQKALRLDMVETVVIDEADEMLSMGFIADIQAILEATPSQRQTAL 194

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   ++++S++++  P+ + V+    T E +       Y    +        L   
Sbjct: 195 FSATLPPAIRQMSQSYMVEPQSVSVSPRQLTVEAV---EQRYYLLDERDKLAALCRLLEV 251

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           + + + +IFC  K     L   L  +GF+  AI+G++ Q +R+++L  F+   ++L+VA+
Sbjct: 252 EPVASALIFCRTKAGTGQLADELSARGFAAEAINGDLSQEARIRVLGRFRNNQLKLLVAT 311

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI D+ HV NFD P   E Y+HRIGRTGRAGR G A +L++ +D   +  IE 
Sbjct: 312 DVAARGLDIDDISHVINFDPPQDPEVYVHRIGRTGRAGRDGVAISLLSPKDRWLLARIEA 371

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ--KSTGFDRRK 410
             + ++        +L  P E   I  H   R    +       GF R K
Sbjct: 372 YAKARLSHC-----TLPTPEE---IMAHREGRLLERMVALLDDGGFAREK 413


>gi|257426220|ref|ZP_05602635.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428878|ref|ZP_05605272.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257431487|ref|ZP_05607860.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257434197|ref|ZP_05610547.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257437110|ref|ZP_05613150.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282914927|ref|ZP_06322707.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M899]
 gi|282925469|ref|ZP_06333123.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus C101]
 gi|293508999|ref|ZP_06667786.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510911|ref|ZP_06669610.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus M809]
 gi|293547513|ref|ZP_06672188.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M1015]
 gi|257270925|gb|EEV03098.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257274220|gb|EEV05737.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257277728|gb|EEV08398.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257280836|gb|EEV10981.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257283503|gb|EEV13630.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282312870|gb|EFB43271.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus C101]
 gi|282321130|gb|EFB51461.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M899]
 gi|290919633|gb|EFD96706.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291094703|gb|EFE24975.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466196|gb|EFF08723.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus M809]
          Length = 506

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 136/441 (30%), Positives = 225/441 (51%), Gaps = 14/441 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S   V ++   G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +  ++LIL PTRELA QVA+   ++ +   + V  + GG+P E Q K L++
Sbjct: 63  KVLG----KQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L  + I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     F     +  K           
Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFT--NFLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 237 VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 297 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
               +K       +S+L PP  K ++ Q         +    +     +    S +    
Sbjct: 357 DANGRK-------MSALRPPHRK-EVLQAREDDIKEKVENWMSKESESRLKRISTELLNE 408

Query: 422 LKESEKISKLQQDIQENDADS 442
             + + ++ L Q++ E + + 
Sbjct: 409 YNDVDLVAALLQELVEANDEV 429


>gi|225374820|ref|ZP_03752041.1| hypothetical protein ROSEINA2194_00440 [Roseburia inulinivorans DSM
           16841]
 gi|225213389|gb|EEG95743.1| hypothetical protein ROSEINA2194_00440 [Roseburia inulinivorans DSM
           16841]
          Length = 531

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 133/377 (35%), Positives = 210/377 (55%), Gaps = 8/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L P+V+ A+ + G+ + TPIQ + IP+V+   DV G AQTGTGKTASF +P+L  
Sbjct: 6   FDELDLYPQVLRAIKEMGFEEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGIPVLHK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    + ++    IL PTRELA QV++   K  K  +    L +  G     Q K L+ 
Sbjct: 66  VDPNNKKTQVI---ILSPTRELAIQVSEEIRKLSKYMHGVKILPVYGGQDINRQIKALKG 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA ++I TPGR++DH  R  +    +  +V+DEAD ML+MGF   I+ I   +P   +  
Sbjct: 123 GAQIIIGTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEYIPEEGRQT 182

Query: 182 L-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + FSATM   +  +++ +  +   I+V     T  +I       Y    K    +   L 
Sbjct: 183 VLFSATMPKPILDITKKYQHDAVTIKVVKKELTVPSI---EQYYYDVKRKDKTEVLTRLL 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  ++FCN KK V  L   L+ +G+    +HG++ Q  R +++  F+ G +++++
Sbjct: 240 DYYNPKLSLVFCNTKKMVDELSEELKSRGYMAEGLHGDMKQAQRDRVMKAFRSGRVEILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G+AFT V  +++  +  I
Sbjct: 300 ATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDI 359

Query: 361 EKLIEKKVDWLNGDLSS 377
            +  + K+  +    S 
Sbjct: 360 MRYCKTKILAMPIPSSD 376


>gi|328873234|gb|EGG21601.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           fasciculatum]
          Length = 418

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 121/376 (32%), Positives = 206/376 (54%), Gaps = 5/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+ KP+ IQ + I  +++  D    AQ+GTGKTA+F +  L 
Sbjct: 45  TFESIHLREDLLRGIYGFGFEKPSAIQQRAIVPIIKGRDTIAQAQSGTGKTATFSIGALQ 104

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++ P+ +IL PTRELA Q+       G   ++ V   +G        ++LE+
Sbjct: 105 SVDVS---IKNPQVIILSPTRELAQQIQKVVMALGGFMSVQVHSFVGQKTISEDVRRLEQ 161

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +   TPGR++D  +R  L    I++L++DEAD ML +GF   I ++   +P   Q +
Sbjct: 162 GVHIASGTPGRVIDLISRKALNTRQIKMLILDEADEMLSLGFQQQINDVYRYLPPATQIV 221

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+T ++  ++E F+ +P RI +     T E I+  FV+   +  K   L    +  
Sbjct: 222 LVSATLTQDVVSMTERFMTDPVRILLKRDELTLEGIKQFFVSVEKEEWKFGTLCD--IYD 279

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K  V  L + + +  F+V ++HG++DQ+ R +I+ +F+ G  ++++ 
Sbjct: 280 SLTITQAVIFCNTKSKVDALTNKMREANFTVASLHGDMDQKEREEIIRSFRSGENRVLIT 339

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V   DI+ +  IE
Sbjct: 340 TDILARGIDVQQVSLVINYDLPMDRENYIHRIGRSGRFGRKGVAINFVKSSDIRILRDIE 399

Query: 362 KLIEKKVDWLNGDLSS 377
           +    ++D +  + + 
Sbjct: 400 QFYSTQIDEMPMNFAD 415


>gi|220926974|ref|YP_002502276.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219951581|gb|ACL61973.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
           ORS 2060]
          Length = 506

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 152/408 (37%), Positives = 232/408 (56%), Gaps = 8/408 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL+  ++ A+ + GYV PTPIQ + +P  +   D+CGIAQTGTGKTA+F LP+L 
Sbjct: 3   QFVDFGLAAPIMKALAETGYVTPTPIQAQAVPPAMTGRDLCGIAQTGTGKTAAFALPILH 62

Query: 62  ILEKGRARVRMPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L       R PR         PTRELA+Q+AD+F  YGK    +  ++ GG+    Q +
Sbjct: 63  RLASETPAKRAPRRGCRVLVLSPTRELASQIADSFRDYGKFLPFSTTVVFGGVTIGRQER 122

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G DVL+ TPGR+LD  +R  L ++++E LV+DEAD+MLD+GFI  ++ I +L+P  
Sbjct: 123 ALANGIDVLVATPGRLLDLVDRRSLSLDSVEYLVLDEADQMLDLGFIHALKRIVTLLPKA 182

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+L FSATM   +  ++  +L++P ++ V   ++TAE +E   +       +       
Sbjct: 183 RQSLFFSATMPKNIATLAAQYLRDPVQVAVTPVATTAERVEQRVIHVSTGAKQAL---LG 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +++   ++F   K     +   LEK G    AIHGN  Q  R + L+ F+ GT +
Sbjct: 240 TILRDESIDRVLVFTRTKHGADRVVRGLEKVGIGSAAIHGNKSQPQRERALAAFRAGTCR 299

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+  V HV NFD+PN  E Y+HRIGRT RAG  G A +   +E+  ++
Sbjct: 300 VLVATDIAARGIDVEGVTHVVNFDLPNVPEAYVHRIGRTARAGADGLAISFCNEEERAYL 359

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKST 404
             IE+L  +KV  +   +  + P  ++   A     R +  P P+   
Sbjct: 360 RDIERLTRQKVPEMAIPVGFVPPSRQEAAEAVAEAERDRRQPGPRGQR 407


>gi|108742054|gb|AAI17661.1| LOC556764 protein [Danio rerio]
          Length = 519

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 132/380 (34%), Positives = 204/380 (53%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F        V+  +L   + +PT IQ +  PL L   D+ GIAQTG+GKT +++LP + 
Sbjct: 96  NFHQAQFPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIV 155

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       R   P  L+L PTRELA QV      YGK+  +    + GG P   Q + L
Sbjct: 156 HINHQPYLERGDGPICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDL 215

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 216 ERGVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 275

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+++++E+FLQ+  +I +     +A       V    +  K   L+Q + 
Sbjct: 276 TLMWSATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLME 335

Query: 240 QSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   +     IIF   KK    L   + + G+    IHG+  Q  R  +L+ F+ G   +
Sbjct: 336 EIMAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPI 395

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     +++   
Sbjct: 396 LIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQAR 455

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + +++E+    +N  L  L
Sbjct: 456 DLVRVLEEARQAINPKLLQL 475


>gi|283471297|emb|CAQ50508.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 506

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 136/441 (30%), Positives = 225/441 (51%), Gaps = 14/441 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S   V ++   G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +  ++LIL PTRELA QVA+   ++ +   + V  + GG+P E Q K L++
Sbjct: 63  KVVG----KQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L  + I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     F     +  K           
Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFT--NFLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 237 VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 297 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
               +K       +S+L PP  K ++ Q         +    +     +    S +    
Sbjct: 357 DANGRK-------MSALRPPHRK-EVLQAREDDIKEKVENWMSKDSESRLKRISTELLNE 408

Query: 422 LKESEKISKLQQDIQENDADS 442
             + + ++ L Q++ E + + 
Sbjct: 409 YNDVDLVAALLQELVEANDEV 429


>gi|125526999|gb|EAY75113.1| hypothetical protein OsI_03008 [Oryza sativa Indica Group]
          Length = 359

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 191/373 (51%), Gaps = 15/373 (4%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +G+   ++  +   G+ KP+ IQ + +  ++   DV   AQ+GTGKT+   L +  I++ 
Sbjct: 1   MGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDT 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
               V+    LIL PTRELAAQ        G   N+ V   IGG       +KLE G  V
Sbjct: 61  AVREVQA---LILSPTRELAAQTERVMLAIGDFINIQVHACIGGKSIGEDIRKLEHGVHV 117

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           +  TPGR+ D   R  L    I++L++DEAD ML  GF   I ++   +P   Q  L SA
Sbjct: 118 VSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQVCLISA 177

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           T+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L         T+
Sbjct: 178 TLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL--YDTLTI 235

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              +IFCN K+ V  L   +    F+V A+HG++ Q+ R  I+  F+ G  ++++ +   
Sbjct: 236 TQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLITT--- 292

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
                  DV  V N+D+PN  E YIHRIGR+GR GR G A   V KEDI+ +  IE+   
Sbjct: 293 -------DVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILRDIEQYYS 345

Query: 366 KKVDWLNGDLSSL 378
            ++D +  +++ L
Sbjct: 346 TQIDEMPMNVADL 358


>gi|33863354|ref|NP_894914.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9313]
 gi|33640803|emb|CAE21258.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9313]
          Length = 635

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 131/372 (35%), Positives = 211/372 (56%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F   G S  ++  + + GY +P+PIQ   IP ++   D+ G AQTGTGKTA+F LP++ 
Sbjct: 84  EFDCFGFSEPLLKTLAEKGYKQPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLIE 143

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L    +R   P+ L+L PTRELA QVAD+F  Y   +     L +  G  F +Q   L+
Sbjct: 144 RLHDHGSR---PQVLVLAPTRELAMQVADSFRAYAVGHPHLKVLAVYGGADFRSQINTLK 200

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR++DH  +G L  + +  LV+DEAD ML MGFI  ++ I   +P  RQ 
Sbjct: 201 RGVDVVVGTPGRLMDHMRQGTLDTSGLRCLVLDEADEMLRMGFIDDVEWILEQLPEERQM 260

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  E++++S+ +L  P  I + +    A  I    +     +        + + 
Sbjct: 261 VLFSATMPSEIRRLSKRYLHEPAEITIKSRDQEARLIRQRCITLQNSHK---LEALRRVL 317

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  IIF   K   + +  +LE  G  V  ++G++ Q  R + +   ++G++ ++V
Sbjct: 318 EAFTGEGVIIFARTKVITLTVAEALEAAGHDVAVLNGDVPQNQRERTVERLRKGSVNILV 377

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E Y+HRIGRTGRAGR G+A   V   + + +   
Sbjct: 378 ATDVAARGLDVDRISLVINYDIPFDSEAYVHRIGRTGRAGRSGEAILFVNPRERRFVGGF 437

Query: 361 EKLIEKKVDWLN 372
           E+ + + ++ ++
Sbjct: 438 ERAVGQPIEPMD 449


>gi|312070734|ref|XP_003138283.1| ATP-dependent RNA helicase DHH1 [Loa loa]
 gi|307766556|gb|EFO25790.1| ATP-dependent RNA helicase DHH1 [Loa loa]
          Length = 432

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 116/382 (30%), Positives = 186/382 (48%), Gaps = 10/382 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  L   ++  + + G+ KP+PIQ  +I + L   D+   A+ GTGKT ++ +P  
Sbjct: 37  IEFEDFCLKRPLLMGIFEKGWEKPSPIQEASISIALSGQDILARAKNGTGKTGAYCIP-- 94

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++K     + P++LI+ PTRELA Q ++      K+ NL V +  GG        +L 
Sbjct: 95  -CIDKVDVEKKYPQSLIIVPTRELAFQTSNICVDLSKHMNLKVMVTTGGTELRNDIMRLN 153

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++    M++   LV+DEAD++L   F   +  +   +P  RQ 
Sbjct: 154 GTVHIIVATPGRILDLMDKNVADMSHCTTLVLDEADKLLSQDFQGILDRVIKFLPPDRQI 213

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L+SAT    +      F+Q   R           T+            K+       L 
Sbjct: 214 MLYSATFPLTVAT----FMQKHMRNPYEINLMEELTLVGVTQYYAYVQEKQKVHCLNTLF 269

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F++G  + +V
Sbjct: 270 RKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSRMAQGHRNRVFHDFRKGACRNLV 329

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  I
Sbjct: 330 CSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGIAINLITYEDRFTLRRI 389

Query: 361 EKLIEKKVDWLNGDLSSLNPPL 382
           E  +  ++  +     S++P L
Sbjct: 390 EAELRTRIAPIP---KSVDPKL 408


>gi|159903626|ref|YP_001550970.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9211]
 gi|159888802|gb|ABX09016.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9211]
          Length = 604

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 137/400 (34%), Positives = 214/400 (53%), Gaps = 15/400 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G S  ++  +   GY  PTPIQ    P ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 54  FEGFGFSDDLINTLESKGYKDPTPIQKAAFPELMLGRDLLGQAQTGTGKTAAFALPILER 113

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKLER 121
           +++     R P+ L+L PTRELA QVAD+F  Y +       L + G   F AQ   L R
Sbjct: 114 IKQ---DTRAPQVLVLAPTRELAMQVADSFRAYAQGRPEVQVLAVYGGSDFRAQINALRR 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH  +G  +  ++E LV+DEAD ML MGFI  I+ I   +P  RQ +
Sbjct: 171 GVQIVVGTPGRVMDHIRQGTFIKTDLETLVLDEADEMLRMGFIDDIEWILEQLPAKRQMI 230

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E++++S+ +L  P  I   T  +  +  +          +       + +  
Sbjct: 231 FFSATMPSEIRRLSKQYLHEPAEI---TIKAQKKEAQLIRQRYIVIQNSFKLEALKRVLE 287

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  IIF   K   + L  SLE    +V  ++G++ Q  R + +   ++G I ++VA
Sbjct: 288 TTADEGVIIFARTKAITLRLSESLEALNHNVAVLNGDVPQTLRERTIERLRQGGIDILVA 347

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N+D+P  +E Y+HRIGRTGRAGR G+A   V+  +   I+ +E
Sbjct: 348 TDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAILFVSPRERSFINNLE 407

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           + + + ++ +    + +        I QH   +  N + Q
Sbjct: 408 RAVGQSIEKMEIPNNEI--------INQHRINKLKNNLSQ 439


>gi|327481186|gb|AEA84496.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri DSM 4166]
          Length = 556

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 146/386 (37%), Positives = 230/386 (59%), Gaps = 9/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+   V+ A+   GY +P+PIQ + IP++L  HD+ G AQTGTGKTA+F LP+L+ 
Sbjct: 8   FAALGIHSAVLAAISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAFALPILSK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++  +     P+ LIL PTRELA QVA  FE Y K       + I  G P   Q K + +
Sbjct: 68  IDPAKRE---PQALILAPTRELALQVATAFETYSKQMPDVSVVAIYGGAPMGPQLKAIRQ 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH +R   L++ I  LV+DEAD ML +GF+  ++ I   +P +RQ++
Sbjct: 125 GAQVIVATPGRLVDHLSRNSELLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQSV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E  L+ P+ I++   + T   IE   +  +A    +  L       
Sbjct: 185 LFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVLRLL---E 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 242 VEDFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVARITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKI 385
           ++  +KV    L      L+  ++K+
Sbjct: 362 RVTNQKVAEARLPNAQQVLDARIKKL 387


>gi|256419120|ref|YP_003119773.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256034028|gb|ACU57572.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 414

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 130/376 (34%), Positives = 225/376 (59%), Gaps = 5/376 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    +S ++  ++ + G+ +PT IQ K IP +L+  DV  IAQTGTGKTA+F +P+L
Sbjct: 1   MKFEQYRISEEIKRSLEELGFKRPTDIQFKAIPSILKGDDVLAIAQTGTGKTAAFAIPVL 60

Query: 61  TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L++   R      R +++ PTRELA Q+++ FE+  K   L +  L GG+    Q KK
Sbjct: 61  HKLQQYHPRKTKGEVRCVVMVPTRELAVQISEVFERLAKYTKLNILGLHGGVDQAPQLKK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVLI TPGR+ D  ++G + ++   IL++DEAD MLD+GFI  I+++   +P   
Sbjct: 121 LAQGVDVLIATPGRMFDLISQGFIDLSQTGILILDEADHMLDLGFIRDIRDVLKHLPRRH 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSAT+ ++++ ++ + + NP RI+++     ++ ++H          +      + 
Sbjct: 181 QTLFFSATIDEDIKDLAYSVVNNPIRIQISPQDPVSKNVQHAVAYVGMDDKRFF---LER 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +      ++F   K     +  ++E+ G     +HG  +Q +R++++  FK+G I+L
Sbjct: 238 LVKEFPENKILVFVRTKVRAERVAAAMERVGIKSLTMHGGKEQDNRLQVMDEFKKGDIKL 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +D+ ARG+DIPDV +V N+D+P+  ENY+HR+GRTGR  + G+A +  + E+   +D
Sbjct: 298 LITTDVNARGIDIPDVEYVVNYDLPDVPENYVHRVGRTGRGVKKGQAVSFCSDEEKPVLD 357

Query: 359 AIEKLIEKKVDWLNGD 374
           AI++ + K++  +  D
Sbjct: 358 AIQQYLGKEITVMKID 373


>gi|330828434|ref|YP_004391386.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565]
 gi|328803570|gb|AEB48769.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii
           B565]
          Length = 416

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 167/415 (40%), Positives = 236/415 (56%), Gaps = 11/415 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L LSP++   + + GY  PTPIQ + IP++L   D+   AQTGTGKTA+FVLP+L 
Sbjct: 5   SFAELALSPRLQQTLTELGYAAPTPIQARAIPVILAGRDLMAGAQTGTGKTAAFVLPLLE 64

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      R  R L+L PTRELA QVA++  +YG+   LT   + GG+   AQ   L
Sbjct: 65  QLLAQPQMESQRPIRALVLVPTRELAVQVAESVARYGQGTGLTSTQVYGGVSIAAQVDAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D+LI TPGR+LDH  +G L ++++  LV DEADRMLDMGF+  I  +   +P  RQ
Sbjct: 125 KNGVDLLIATPGRLLDHLRQGALSLDSLRHLVFDEADRMLDMGFMDEITALLKQLPVDRQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  D L  +S+  L++P+ IEV   ++TA  +       Y   S +   L + +
Sbjct: 185 TLLFSATCDDNLFALSKVLLRDPELIEVAPRNTTAAEV---EQRVYTVDSDRKLALVEHM 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    +IF   ++    L   L K G +  A HG++ Q +R K+L  F+ GT+Q +
Sbjct: 242 LKVKGWAPALIFSRTRQGADKLAQQLGKSGINALAFHGDLSQSAREKVLLEFRAGTLQAL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI D+ +V N + P  AE+Y+HRIGRTGRAG  G A TL + ED   ++ 
Sbjct: 302 VATDVAARGLDITDLNYVINLEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDTPLLEK 361

Query: 360 IEKLIEKKV--DWLNG---DLSSLNP-PLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           +E +++ ++   W  G   DL+   P P      AQ   ARK      K     R
Sbjct: 362 VEAVLDTRLPQQWFPGFEPDLTRFEPEPRRNSKAAQKQRARKQALAGNKGGKGKR 416


>gi|325921307|ref|ZP_08183167.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
 gi|325548274|gb|EGD19268.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
          Length = 462

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 160/437 (36%), Positives = 238/437 (54%), Gaps = 10/437 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PT IQ + IPLVL  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      V  PR     IL PTRELA QV D+   Y K   +  A++ GG+    Q  
Sbjct: 61  QHLGTTPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+LI  PGR++DH  R  + ++ IE+L++DEADRMLDMGF+P I+ I + +P  
Sbjct: 121 TLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180

Query: 178 RQTL-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +   LFSAT  + +++++  F++NP +I+V   ++ AE+I H          +   L  
Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               S+   +  ++F   K     L   LEK G    AIHGN  Q  RM+ LS+FK G +
Sbjct: 241 LAQDSR---EQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI ++  V N+D+P  AE+Y+HRIGRTGR G  G+A +LVA+++ K 
Sbjct: 298 TVLVATDIAARGIDINELPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  I +++ + V+    D+    P    I        R   P   ++      ++ +   
Sbjct: 358 LRQIVRMLGRDVEI--RDVPGYEPQT-PIRWGNSAPGRAEQPGGDRAPRKSHARRPHGDA 414

Query: 417 KSHIPLKESEKISKLQQ 433
                     K    Q+
Sbjct: 415 PRQAHAHAGPKKPGGQR 431


>gi|318040201|ref|ZP_07972157.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0101]
          Length = 537

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 136/371 (36%), Positives = 215/371 (57%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G +P+++ A+   GY +P+PIQ   IP +L   D+ G AQTGTGKTA+F LPML  
Sbjct: 80  FASFGFAPELLDALTAIGYEEPSPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPMLAA 139

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKLER 121
           L+  +   R P+ L+L PTRELA QVAD F+ Y  N      L + G   F  Q  +L+R
Sbjct: 140 LDGQQ---RTPQVLVLTPTRELAIQVADAFKSYAANMPHLRVLPLYGGSDFRDQIVRLKR 196

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH  +G L ++ +  LV+DEAD ML MGFI  ++ +   +P  RQ +
Sbjct: 197 GVQIVVGTPGRVMDHMRQGTLDLSGLRSLVLDEADEMLRMGFIDDVEWVLEQLPSQRQVV 256

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++S  +L +P  + + T  + +  I   F+                +  
Sbjct: 257 LFSATMPPEIRRISHKYLNDPAEVTIKTKGADSSRIRQRFITVNGPQK---LEALTRVLE 313

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +T +  IIF   K   V +  +LE +G+ V  ++G++ Q  R + +   K GT+ ++VA
Sbjct: 314 SETKEGVIIFARTKAITVTVAEALEAKGYDVAVLNGDVAQSQRERTIERLKNGTVDVLVA 373

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D+P  +E Y+HR+GRTGRAGR G A   V   + + +  +E
Sbjct: 374 TDVAARGLDVDRITLVVNYDIPFDSEAYVHRVGRTGRAGRSGDAILFVTPRERRFLGGLE 433

Query: 362 KLIEKKVDWLN 372
           + + + ++ + 
Sbjct: 434 RAVGRPIEPMQ 444


>gi|198274009|ref|ZP_03206541.1| hypothetical protein BACPLE_00145 [Bacteroides plebeius DSM 17135]
 gi|198273087|gb|EDY97356.1| hypothetical protein BACPLE_00145 [Bacteroides plebeius DSM 17135]
          Length = 629

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 144/485 (29%), Positives = 254/485 (52%), Gaps = 32/485 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+S ++  A+ + GY  P P+Q + IP +L   +DV  +AQTGTGKTA+F LP++
Sbjct: 3   TFEELGVSQEIRKAIEEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             ++    +  +P+ L+L PTREL  Q+A +   Y K   +L +  + GG   ++Q + +
Sbjct: 63  QKIDV---KNCVPQALVLCPTRELCLQIAGDLTDYSKYITDLKILPVYGGSSIDSQIRSM 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR++D   R    +  +  +V+DEAD ML+MGF   I  I   VP  R 
Sbjct: 120 KRGVHIIVATPGRLIDLMERKVARLETVRDVVMDEADEMLNMGFTDSINTILENVPNDRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSATM+ E+ ++++ +L + K I + T +   E  ++     Y  ++K   L  + +
Sbjct: 180 TLMFSATMSPEIARIAKTYLHDAKEITIGTKN---EGSKNVNHVAYIVHAKDKYLALKRV 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GI+FC  +K    +   L + G+S  ++HG + Q  R  ++  F++  +QL+
Sbjct: 237 VDFYPQIYGIVFCRTRKETQEIADKLIQDGYSADSLHGELSQAQRDLVMQKFRQRHLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDSLTHVINYGLPDDIESYTHRSGRTGRAGKTGISIAIINLREKGKMRE 356

Query: 360 IEKLIEKKVDWLN----------------GDLSSLNPPLEKIDIAQHNHARKNNPIPQK- 402
           IE++I+KK +                    D+  +    E+I+       RK + + ++ 
Sbjct: 357 IERIIKKKFEVSELPTGKEICEQQLIKVIDDIEKVKVSEEEIETFLPGIYRKLDWLSKED 416

Query: 403 ------STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPK 456
                 S  F+R    Y +       K ++K ++ ++  ++ D + +G +       L  
Sbjct: 417 LIKRVVSLEFNRFLDYYKNAPEIEQPKANDKKAETKES-RKGDKEKVGRKAEKGYTRLFL 475

Query: 457 NRGKL 461
           N GK 
Sbjct: 476 NLGKT 480


>gi|326426645|gb|EGD72215.1| DEAD box ATP-dependent RNA helicase [Salpingoeca sp. ATCC 50818]
          Length = 1054

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 225/447 (50%), Gaps = 13/447 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   GL  +V+  +    Y  PTPIQ + +P+++   D+ GIA+TG+GKT +F+LPML 
Sbjct: 315 TWNQSGLPRRVLDVLRALKYDDPTPIQAQALPVIMSGRDMLGIAKTGSGKTLAFLLPMLR 374

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               ++   +      LIL PTRELA Q     +K+ K+ +L +A + GG     Q   L
Sbjct: 375 HVLDQRRVRQGEGCIALILSPTRELAVQTYTEAKKFTKHLDLRIACVYGGSDIADQIAHL 434

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +R  ++++CTPGR++D              I  +V+DEADRM DMGF P +  I   +  
Sbjct: 435 KRSVEIIVCTPGRMIDMLTVNRGKVTNPRRITYVVLDEADRMFDMGFEPQVMRILDNIRP 494

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L+ P  I+V   S  ++T+E   +    Q       L 
Sbjct: 495 DRQTVMFSATFPRAMEVLARKILKKPIEIQVGGRSIVSDTVEQHVLVLEEQNK--FNKLL 552

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + I+F ++++    L  +L   G+    +HG + Q  R   + +FK G +
Sbjct: 553 ELLGIYYVQGSVIVFVHRQEKADMLLTNLMGHGYMSLPLHGAVSQEDRQSNIRDFKLGNV 612

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G AFT V K+D + 
Sbjct: 613 KILIATSVAARGLDVKSLKLVVNYDCPNHYEDYVHRCGRTGRAGNKGTAFTFVTKDDKQL 672

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD------RRK 410
              + K +E     +  DL ++    +K   A+       +    +   F       R++
Sbjct: 673 AGHVIKALELSSQEVPADLKAVWEEYKKEMKAKGKRIGAGSGFRGRGYKFSAEELIRRKQ 732

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQE 437
               + K+H          + +Q++ E
Sbjct: 733 MKLLALKAHSEGNLDADYKEREQELAE 759


>gi|304398130|ref|ZP_07380005.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304354416|gb|EFM18788.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 430

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 140/421 (33%), Positives = 214/421 (50%), Gaps = 11/421 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV A+   G+   TPIQ   +P  L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVVEALDTKGFQYCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L         +V  PR LIL PTRELA Q+  + E    +  L + L  GG  ++ Q K
Sbjct: 70  HLLSHPAAEGRQVNQPRALILAPTRELAVQIHADAEPLTASTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE+G D+L+ T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLEQGVDILVATTGRLIDYAKQNHVNLGAIQVMVLDEADRMFDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F        V       +T        +   +++   L Q
Sbjct: 190 TQRLSMLFSATLSYRVRELAFEHMNSAEYVEVEPEQ-KTGHRIQEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G + 
Sbjct: 249 TLLEEEWPDRAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARK--NNPIPQKSTGFDRRKK 411
            +IE+ I   +          L+ L PP         N  R+  NN   + +   + RK+
Sbjct: 369 PSIEEYIGHSIPVSKYSSEALLTDLPPPKRLQRSRSGNGPRRGGNNANRRGAPRNNNRKR 428

Query: 412 N 412
           +
Sbjct: 429 S 429


>gi|301384847|ref|ZP_07233265.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059212|ref|ZP_07250753.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           K40]
 gi|302130851|ref|ZP_07256841.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|331017330|gb|EGH97386.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 445

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 137/437 (31%), Positives = 217/437 (49%), Gaps = 15/437 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 2   FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L          R +IL PTRELA Q     E++ +   +   L+ GG  F+ Q   L + 
Sbjct: 62  LIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI TPGR+L+  N G L + ++E+LV+DEADRMLDMGF   ++ +        QT+L
Sbjct: 122 PDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTML 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT T                  +   S +            A ++     +   L + 
Sbjct: 182 FSAT-TGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLAN 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T +  IIF N K     L   L    +    +HG+ DQ+ R   +   K+G  ++MVA+
Sbjct: 241 ETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVAT 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  +  V NFD+P   ++Y+HR+GRTGRAG  G A +L+   D   + ++E+
Sbjct: 301 DVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVER 360

Query: 363 LIEKKVD-WLNGDLSSLNPPLEKIDIA-------------QHNHARKNNPIPQKSTGFDR 408
            +++  +  +  ++       +K+  +             + +  +     P K    +R
Sbjct: 361 YLKQSFERRVIKEVKGTYGGPKKVKASGKAVGVKKKKTDVKGDKKKVAAKGPTKRKTVNR 420

Query: 409 RKKNYSSQKSHIPLKES 425
            K +  SQ    PLK+ 
Sbjct: 421 PKSDLVSQDGMAPLKKR 437


>gi|195475963|ref|XP_002090252.1| GE12898 [Drosophila yakuba]
 gi|194176353|gb|EDW89964.1| GE12898 [Drosophila yakuba]
          Length = 522

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 138/430 (32%), Positives = 228/430 (53%), Gaps = 15/430 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLGL+  +  A  +  +  P+ IQ + IP+ LQ  DV G+A+TG+GKT +F LP+L
Sbjct: 68  LTWKDLGLNETLCQACDELKWRSPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 127

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      L+L PTRELA Q+ + FE  G    +   +++GG+   AQ  +L 
Sbjct: 128 HALLENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 184

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGR++DH    K      I+ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 185 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 244

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L++P ++EV+    T E ++  ++       K   +    +
Sbjct: 245 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPV---KYKDVYLVHI 301

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +     + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK     ++
Sbjct: 302 LNDLAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 361

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA TLV + DI+    
Sbjct: 362 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDIELYQR 421

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP--------QKSTGFDRRKK 411
           IE L+ K++     +   +    E++  AQ     +   +         ++        +
Sbjct: 422 IEHLLGKQLPLYKCEEDEVMALQERVAEAQRTAKLELKDLEDTKGVKGHKRGGDIHDDSE 481

Query: 412 NYSSQKSHIP 421
           N++  +  I 
Sbjct: 482 NFTGARKRIK 491


>gi|28868793|ref|NP_791412.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213969602|ref|ZP_03397738.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           T1]
 gi|28852032|gb|AAO55107.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213925698|gb|EEB59257.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           T1]
          Length = 453

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 137/437 (31%), Positives = 217/437 (49%), Gaps = 15/437 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 10  FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L          R +IL PTRELA Q     E++ +   +   L+ GG  F+ Q   L + 
Sbjct: 70  LIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV 129

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI TPGR+L+  N G L + ++E+LV+DEADRMLDMGF   ++ +        QT+L
Sbjct: 130 PDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTML 189

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT T                  +   S +            A ++     +   L + 
Sbjct: 190 FSAT-TGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLAN 248

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T +  IIF N K     L   L    +    +HG+ DQ+ R   +   K+G  ++MVA+
Sbjct: 249 ETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVAT 308

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  +  V NFD+P   ++Y+HR+GRTGRAG  G A +L+   D   + ++E+
Sbjct: 309 DVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVER 368

Query: 363 LIEKKVD-WLNGDLSSLNPPLEKIDIA-------------QHNHARKNNPIPQKSTGFDR 408
            +++  +  +  ++       +K+  +             + +  +     P K    +R
Sbjct: 369 YLKQSFERRVIKEVKGTYGGPKKVKASGKAVGVKKKKTDVKGDKKKVAAKGPTKRKTVNR 428

Query: 409 RKKNYSSQKSHIPLKES 425
            K +  SQ    PLK+ 
Sbjct: 429 PKSDLVSQDGMAPLKKR 445


>gi|3986287|dbj|BAA34994.1| DjVLGB [Dugesia japonica]
          Length = 781

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 143/418 (34%), Positives = 228/418 (54%), Gaps = 13/418 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L L P +   +L A Y +PTPIQ   IP +L+  D+   AQTG+GKTA+F++P++ 
Sbjct: 185 NFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIIN 244

Query: 62  ILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            L          ++   P+ LIL PTRELA Q+    +K+  N  L   ++ GG    +Q
Sbjct: 245 HLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQ 304

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++++ G  +L+ TPGR++D   + K+ +   + +V+DEADRMLDMGF P I+ I     
Sbjct: 305 IREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESN 364

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTL+FSAT   E+QK++ +FL N   + V    ST+++I+   +         
Sbjct: 365 MPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQEIIYMTDVEK-- 422

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L+ +  +       +IF   KK   +L   L  +G+ V +IHG+  Q  R   LS F
Sbjct: 423 LNYLKNIFNTTAPNTLILIFVETKKGADSLARFLLSKGYPVSSIHGDRSQVEREAALSMF 482

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G   ++VA+ +AARGLDIP+V HV N+D+P+  E Y+HRIGRTGR G HG+A +    
Sbjct: 483 RNGQCPILVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRLGNHGRATSFYVD 542

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           ++      +  L+++    +   LS+L   L++      N+ +++N    K+  F  R
Sbjct: 543 KNNNIAIDLVDLLKEANQIVPQWLSALADELKRNSTMGSNN-KRHNQRRYKNGNFGGR 599


>gi|325266846|ref|ZP_08133517.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
 gi|324981587|gb|EGC17228.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
          Length = 452

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 157/412 (38%), Positives = 249/412 (60%), Gaps = 11/412 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ FA+LGL  ++V A+ + GY +PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP 
Sbjct: 1   MNKFAELGLGAEIVAALEEQGYQQPTPIQEAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 60

Query: 60  LTILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           L  L++       P        +L PTRELA Q+  N ++Y KN  L   +L GG+  + 
Sbjct: 61  LERLKRYANASASPAMHPVRMLVLTPTRELADQIDQNTQRYIKNLPLRHTVLFGGVNMDK 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  +L  G ++++ T GR+LDH  +  +++N +EI+V+DEADRMLDMGFI  I+NI  ++
Sbjct: 121 QTAQLRSGCEIVVATVGRLLDHVKQKNIVLNKVEIVVLDEADRMLDMGFIDDIRNIMQML 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQTLLFSAT    ++K++++F+ +P+ +EV   ++T   +E   +A      +    
Sbjct: 181 PRPRQTLLFSATFAPAIRKLAQDFMHSPEVVEVAAQNTTNANVEQHVIAVDTHRKRDL-- 238

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             + L     M+  I+FC  K++   +   L ++G SV AIHG+  Q++R+ +LS FK G
Sbjct: 239 -LERLIVDLGMQQVIVFCKTKQSADQVARDLARRGLSVSAIHGDKSQQTRLDVLSQFKAG 297

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           +++++VA+D+AARGLDI ++  V N+++P +AE+Y+HRIGRTGRAG  G A +++ + + 
Sbjct: 298 SLRVLVATDVAARGLDIAELPFVVNYEMPVQAEDYVHRIGRTGRAGADGVAISMMDESEQ 357

Query: 355 KHIDAIEKLI--EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           K  DAI+ L   E  +  +     S     +   +A+    R +    Q+S+
Sbjct: 358 KMYDAIKALTGNELPISRIEHFEPSWEQQKQLAPVARQRSERGSKRQAQRSS 409


>gi|270005640|gb|EFA02088.1| hypothetical protein TcasGA2_TC007723 [Tribolium castaneum]
          Length = 447

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 145/412 (35%), Positives = 207/412 (50%), Gaps = 6/412 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L+P ++      G   PTPIQ   IP +L   D  G A+TG+GKT +F LP+L 
Sbjct: 5   SFDKLQLNPWIIRQCATIGVRSPTPIQTNCIPPILAGRDCIGAAKTGSGKTLAFALPILQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L            LIL PTRELA Q+AD F   GK  NL   +++GG+    Q K L R
Sbjct: 65  KL---CEDPYGIFALILTPTRELAFQIADQFAVIGKVMNLRHCVIVGGMDMVVQGKDLAR 121

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR      +      N +  LV+DEADR+L   F   I+ I   +P  RQ 
Sbjct: 122 KPHIVVATPGRLADHLESCNTFNFNKLRFLVLDEADRLLGGHFDEQIKTIFQALPKERQN 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+TD L+K+ +   ++    E     +T E +E  +V           +      
Sbjct: 182 LFFSATITDTLEKLKDVTGKDVFFYEAPAEVATVEQLEQNYVLCPKDVKDAYLVETIRTY 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 N +IF N  KN   L  +L + GF   A+H  + Q+ R+  L+ FK  TI++++
Sbjct: 242 RATNDGNILIFTNTCKNCQVLSMTLNEVGFENVALHAMMKQQQRLAALAKFKSNTIKILL 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V N ++P   + YIHR+GRT RAGR+GKA +LV   DIK + AI
Sbjct: 302 ATDVASRGLDIPTVQLVINHNIPKIPKEYIHRVGRTARAGRNGKAISLVTPYDIKLLQAI 361

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK--NNPIPQKSTGFDRRK 410
           E+ I  K+     D S +     +I + +     K       +K     R+K
Sbjct: 362 EQHINTKLTEFKLDDSEVGKIFTQISVTKSEAYIKLDEQDFYEKKMINKRKK 413


>gi|322792753|gb|EFZ16586.1| hypothetical protein SINV_00105 [Solenopsis invicta]
          Length = 643

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 125/415 (30%), Positives = 206/415 (49%), Gaps = 13/415 (3%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI---LEKG 66
           P ++  +    + KP+PIQ +  P++L   D+ GIAQTGTGKT +F+LP L         
Sbjct: 232 PDILTEIRKQNFEKPSPIQCQAWPILLSGRDLIGIAQTGTGKTLAFLLPALIHIDGQVTP 291

Query: 67  RARVRMPRTLILEPTRE------LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           R     P  L++ PTRE                      N     + GG   +AQ   + 
Sbjct: 292 RDERPGPNVLVMAPTRELALQIEKEVAKYSYRGIKAYLKNYLRVCVYGGGSRKAQVATVS 351

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  ++I TPGR+ D      L ++ +  L++DEADRMLDMGF P I+     V   RQT
Sbjct: 352 SGVQIVIATPGRLNDLVQANILDVSAVTYLILDEADRMLDMGFEPQIRKTLLGVRPDRQT 411

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT    ++++++++++NP ++ V +    A       +    Q  K   +  Q  Q
Sbjct: 412 VMTSATWPQGVRRLAQSYMKNPLQVFVGSLDLAAVHSVTQKIYMVDQDEKTEYMH-QFFQ 470

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F  +K  V ++   L        +IHG+ DQ  R + L + K GT+Q+++
Sbjct: 471 EMGPHDKAIVFFGKKSKVDDISSDLALSNIECQSIHGDRDQADREQALEDLKSGTVQILL 530

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RG+DI DV HV N+D P   E Y+HR+GRTGRAGR G++ T + ++D  H  A+
Sbjct: 531 ATDVASRGIDIEDVTHVLNYDFPRDIEEYVHRVGRTGRAGRTGESITFMTRQDWHHAKAL 590

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
             ++E+    +  ++  +    E+ D  +     + + +     G   R++ Y  
Sbjct: 591 IDILEEANQEVPEEVYKMA---ERYDAWKQKKDAEQSSLRGNRYGNSGRRERYRR 642


>gi|269968866|ref|ZP_06182847.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio
           alginolyticus 40B]
 gi|269826516|gb|EEZ80869.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio
           alginolyticus 40B]
          Length = 421

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 156/419 (37%), Positives = 249/419 (59%), Gaps = 7/419 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++FADLG+  K++  + +   V PTP+Q K+IP VL   ++   AQTGTGKTA+F LP++
Sbjct: 7   VNFADLGIEQKLIETLGNLNIVTPTPVQEKSIPHVLAGKNLLAAAQTGTGKTAAFGLPII 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++ +     P+ LIL PTRELA QV DN  +Y     L +  + GG     Q +KLE
Sbjct: 67  QTVQQKKLNGT-PQALILVPTRELAQQVFDNLNQYSAETELRIVCVYGGTSIGVQKRKLE 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+LI TPGR+LDH   G + ++   +LV+DEADRMLDMGF P +Q I   +P  +Q 
Sbjct: 126 EGADILIATPGRLLDHLFNGNVNISKTGMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQI 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    ++ ++   +++P  +EV+  ++TAET+       Y    K+   L   L 
Sbjct: 186 LLFSATFEKRIKTIAYKLMESPVEVEVSPANTTAETV---TQMVYPVDKKRKRELLAYLI 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  ++F   K+    L   L+  G    +I+G+  Q +R + L  FK+G ++ ++
Sbjct: 243 GSRNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALI 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++   + AI
Sbjct: 303 ATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLQAI 362

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLE-KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           E L+++++  +WL G   SL   +E + +  + + + +   +  K      R K+ SS+
Sbjct: 363 ENLLDQRLPQEWLAGFEPSLVEEVEPEQNGRRRSRSSEKRKLKAKLAIHKNRGKSRSSR 421


>gi|300704701|ref|YP_003746304.1| DEAD/DEAH box helicase [Ralstonia solanacearum CFBP2957]
 gi|299072365|emb|CBJ43703.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
           RNA helicase(C-terminal) (rhlE-like) [Ralstonia
           solanacearum CFBP2957]
          Length = 603

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 146/416 (35%), Positives = 232/416 (55%), Gaps = 32/416 (7%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-- 63
           LGL  ++V A+ +  Y  PTP+Q + IP  L   D+   +QTG+GKTA+F+LP +  +  
Sbjct: 35  LGLDERIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQRISE 94

Query: 64  ------------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVA 104
                              + R     P  L+L PTRELA QV     +YG++   +  A
Sbjct: 95  QPEPQRPRMDGAPQRVKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRRIVCA 154

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
            ++GG+P+  Q   L R  D++I TPGR+LDH + G++ ++ +++LV DEADRMLDMGF 
Sbjct: 155 SILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFA 214

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
             I+ I    P +RQ L+FSATM   +++++E  ++ P+RIE+         IE     T
Sbjct: 215 DDIEAIVGATPESRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARVDQSNIEERLHFT 274

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                K    L   L    ++K  I+F   K++  +L   L + GF+  A+HG++ Q +R
Sbjct: 275 DDMSHK--QQLLDHLLRDASLKQAIVFTATKRDADSLAERLTETGFAAGALHGDMHQGAR 332

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + L+  + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR G 
Sbjct: 333 NRTLTALRRGHLRILVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGI 392

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           A  LV   D      IE+ ++++++            +E ++  +    R+  P P
Sbjct: 393 AINLVNHGDTFQWRRIERFVDRRIN---------ATVVEGLEPKRAPKPRREGPRP 439


>gi|291396480|ref|XP_002714472.1| PREDICTED: rCG25924-like [Oryctolagus cuniculus]
          Length = 649

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 130/411 (31%), Positives = 216/411 (52%), Gaps = 12/411 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P+V+  +  AG+ KPTPIQ +T P+VLQ  DV G+AQTGTGKT S+++P    
Sbjct: 250 FETF---PEVMKNIEKAGFKKPTPIQSQTWPIVLQGIDVIGVAQTGTGKTLSYLMPGFIH 306

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+      R    +++       A             NL    + GG   EAQ + + +G
Sbjct: 307 LDCQPVEKRNGPGMLVLTPTRELALQVQAECSKYSYKNLRSVCIYGGGDREAQIQDVSKG 366

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR+ D      + + ++  LV+DEAD+MLDMGF P I  I   V   RQT++
Sbjct: 367 VDIVIATPGRLNDLQMNNFIRLKSVTYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTIM 426

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT    ++++++++L+ P  + V T    A +     +    +  K    +Q+ L++ 
Sbjct: 427 TSATWPYGVRRLAQSYLKEPMLVYVGTLDLVAVSTVKQNIIITTEEEK-RIHIQKFLENM 485

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F ++K    +L   L  Q  SV ++HGN +Q  R K L NFK G +++++A+
Sbjct: 486 SPKDKVIVFVSRKIVADHLSSDLVLQHLSVESLHGNREQSDREKALKNFKTGKVRILIAT 545

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLA+RGLD+ D+ HV+N+D P   E Y+HR+GRTGRAG  G + TL+ + D +    +  
Sbjct: 546 DLASRGLDVHDITHVYNYDFPRNIEEYVHRVGRTGRAGNTGVSITLITRNDWRVAAELIH 605

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           ++E+    +  +L ++          ++N ++    + +K      + K +
Sbjct: 606 ILERANQNIPEELVAM--------AERYNASKLKREMEKKMGRPQAKPKKF 648


>gi|169615935|ref|XP_001801383.1| hypothetical protein SNOG_11134 [Phaeosphaeria nodorum SN15]
 gi|182676441|sp|Q0UAT0|FAL1_PHANO RecName: Full=ATP-dependent RNA helicase FAL1
 gi|160703076|gb|EAT81633.2| hypothetical protein SNOG_11134 [Phaeosphaeria nodorum SN15]
          Length = 374

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 112/377 (29%), Positives = 190/377 (50%), Gaps = 30/377 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   GY  P+ +Q + I  V +  D    AQ+GTGKTA+F + +L 
Sbjct: 26  TFEAMHLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  G                             G   N+     IGG       +KL+ 
Sbjct: 86  SVIMGL----------------------------GDYMNVQCHACIGGTNVGEDIRKLDY 117

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   NI++LV+DEAD +L+ GF   I ++   +P   Q +
Sbjct: 118 GQHVVSGTPGRVADMIRRRNLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVV 177

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++ +++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 178 VVSATLPYDVLEMTTKFMTDPVRILVKRDELTLEGLKQYFIAIEKEEWKFDTLCDL--YD 235

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V ++HG++ QR R  I+ +F++   +++++
Sbjct: 236 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQRERDSIMQDFRQANSRVLIS 295

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   V +ED++ +  IE
Sbjct: 296 TDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTQEDVRILRDIE 355

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  +++ L
Sbjct: 356 LYYSTQIDEMPMNVADL 372


>gi|121997715|ref|YP_001002502.1| DEAD/DEAH box helicase domain-containing protein [Halorhodospira
           halophila SL1]
 gi|121589120|gb|ABM61700.1| DEAD/DEAH box helicase domain protein [Halorhodospira halophila
           SL1]
          Length = 403

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 154/399 (38%), Positives = 231/399 (57%), Gaps = 11/399 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F ++GLS +++ AV   GY +PT IQ + IP VL   DV   AQTGTGKTA+F LP+L
Sbjct: 1   MTFENIGLSQELLRAVAQQGYDQPTAIQAQAIPAVLGGGDVMASAQTGTGKTAAFTLPLL 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                   +   R  R L+L PTRELAAQV+++   YG++  L    + GG P   Q   
Sbjct: 61  QRLSDTAPQQGQRRIRALVLTPTRELAAQVSESVATYGRHLPLRSTEIYGGAPMGKQTAA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+++ TPGR++DH +RG + + ++++L++DEADRMLDMGF P I+ I   VP  R
Sbjct: 121 LRRGVDIVVATPGRLIDHLDRGNVDLRHVDMLILDEADRMLDMGFKPAIERILKSVPNQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +  +  ++  FL  P  IE  T ++ AE +E       A   ++       
Sbjct: 181 QTLLFSATFSGAVGGLARRFLNEPTVIEAGTANAAAEAVEQGAYFVDAGRKRELLTQL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +    +  ++F   K+    L   LE++G    +IHG+  Q  R + L+ FK  +++ 
Sbjct: 239 -INDGDWRQVLVFTRTKRGADRLAEQLEREGIRSQSIHGDKSQGQRGRALAAFKRKSVRA 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV N+D+PN  E+YIHRIGRTGR G  G+A++LV  E+     
Sbjct: 298 LVATDVAARGLDIAGLPHVVNYDLPNNPEDYIHRIGRTGRGGDSGEAWSLVGGEERGQFK 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           AI++L+++++       + +    E +        R+NN
Sbjct: 358 AIQRLVKREIP------AQIAQGFEPVRRGGSAPTRRNN 390


>gi|328783051|ref|XP_624586.2| PREDICTED: putative ATP-dependent RNA helicase me31b-like isoform 1
           [Apis mellifera]
          Length = 444

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 111/375 (29%), Positives = 190/375 (50%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L  +++  + + G+ KP+PIQ  +IP+ L   D+   A+ GTGKT ++ +P+L 
Sbjct: 56  EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDILARAKNGTGKTGAYSIPVLE 115

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    R  + + L+L PTRELA Q +    +  K+  + V +  GG        ++ +
Sbjct: 116 QVDP---RKDVIQALVLVPTRELALQTSQICIELAKHMEIKVMVTTGGTDLRDDIMRIYQ 172

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGRILD  ++    M++ + LV+DEAD++L   F   + ++ S +P  RQ L
Sbjct: 173 SVQVIIATPGRILDLMDKNVANMDHCKTLVLDEADKLLSQDFKGMLDHVISRLPHERQIL 232

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    +++    F++   R           T++           ++       L S
Sbjct: 233 LYSATFPLTVKQ----FMEKHLRDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFS 288

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   +   G+    IH  + Q  R ++  +F+ G  + +V+
Sbjct: 289 KLQITQSIIFCNSTQRVELLAKKITDLGYCCYYIHAKMAQAHRNRVFHDFRAGLCRNLVS 348

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  IE
Sbjct: 349 SDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRFNLHRIE 408

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 409 QELGTEIKPIPKVID 423


>gi|304396354|ref|ZP_07378235.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304355863|gb|EFM20229.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 642

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 134/378 (35%), Positives = 228/378 (60%), Gaps = 8/378 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+  ++ ++   GYVKP+PIQ + IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 7   TFADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLH 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     V+ P+ L+L PTRELA QVA+   ++ K+      + +  G  ++ Q + L 
Sbjct: 67  NIDPT---VKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRALR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR+LDH  RG L ++N+  LV+DEAD ML MGFI  ++ I + +P   QT
Sbjct: 124 QGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPADHQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + ++++++ F+++P+ + + +  +T   I   +   Y + +       +   
Sbjct: 184 ALFSATMPEAIRRITKRFMKDPQEVRIQSSLTTRPDISQSYWTAYGRKTDALVRFLE--- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE+ G++  A++G+++Q  R + L   K+G + +++
Sbjct: 241 -AEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 300 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 359

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    + L
Sbjct: 360 ERTMKLTIPEVELPNAEL 377


>gi|169829741|ref|YP_001699899.1| ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus C3-41]
 gi|168994229|gb|ACA41769.1| Probable ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus
           C3-41]
          Length = 508

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 138/376 (36%), Positives = 219/376 (58%), Gaps = 6/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L +S   + +V   G+ + TPIQ  TI   ++  DV G AQTGTGKTA+F +P++ 
Sbjct: 3   NFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +    + L++ PTRELA QV++   K G +  + +  + GG     Q + L+ 
Sbjct: 63  KIDP---KNPNIQALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRALKN 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI+DH NR  L + +++ LV+DEAD ML+MGFI  I  I   VP  RQTL
Sbjct: 120 RPQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINAILENVPSERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K++E F+++P+ +++     T + I            ++   +   L +
Sbjct: 180 LFSATMPPAIRKIAETFMRDPEIVKIKAKELTVDNI---DQYFVKSAEREKFDVLSRLLN 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  IIF   K+ V  L  +L  +G+    IHG++ Q  R+ +L  FKE  I ++VA
Sbjct: 237 VHQPELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLRIVE 356

Query: 362 KLIEKKVDWLNGDLSS 377
           +  +K++  L    S 
Sbjct: 357 ETTKKRMTPLRPPTSD 372


>gi|117921774|ref|YP_870966.1| ATP-dependent RNA helicase SrmB [Shewanella sp. ANA-3]
 gi|117614106|gb|ABK49560.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 419

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 134/388 (34%), Positives = 214/388 (55%), Gaps = 4/388 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P ++ ++   G++ PT IQ +T+P  L++ D+   A TGTGKTASF+LP L
Sbjct: 1   MQFEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPAL 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L     R      + IL PTRELA+Q+            L +A++ GG+P+  Q + L
Sbjct: 61  QHLIDFPRRYSGHARILILTPTRELASQIHRYACHLATGQGLNIAIITGGVPYGPQEEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   D+L+ TPGR++++ ++GK    +++IL+IDEADRMLDMGF   ++ I       +Q
Sbjct: 121 KDNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT+ +    +          IE++  +   E  +       A   +    L   L
Sbjct: 181 NMLFSATL-EGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKEHKIALLCYL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+ +K  I+F   +  V +L   L K G     + G+++Q+ R + LS F +G + ++
Sbjct: 240 LKQEDVKRAIVFVKTRDVVSSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI D+ HV NFD+P  A++YIHRIGRTGRAG  G A +L    D++ +  
Sbjct: 300 LATDVAARGIDIDDISHVINFDMPRSADSYIHRIGRTGRAGAKGTAISLAEAHDMRIVGK 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
           IE+ IE+ +      +  L P  ++  +
Sbjct: 360 IERYIEQPLKR--RIIEELRPKHKEARV 385


>gi|165933600|ref|YP_001650389.1| ATP-dependent RNA helicase [Rickettsia rickettsii str. Iowa]
 gi|165908687|gb|ABY72983.1| ATP-dependent RNA helicase [Rickettsia rickettsii str. Iowa]
          Length = 414

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 144/427 (33%), Positives = 228/427 (53%), Gaps = 17/427 (3%)

Query: 1   MDF--ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           MD+   +  LS +++ A+      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP
Sbjct: 1   MDYIMKNFNLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           ++    K +         IL PTRELA Q+     K   +Y +  A+LIGG P   Q  +
Sbjct: 61  LIDSFIKNKTTAL-----ILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQ 115

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG    ++ I   +P  R
Sbjct: 116 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 175

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSATM   +  VS+ +L NP RI V   +  A  I+          S K       
Sbjct: 176 QVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQ----ESMHVSDKEKFSALT 231

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            Q      + IIF   K++   L   L+ +  +  AIHG++ QR R +++ +F++   ++
Sbjct: 232 KQLGHREGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRI 291

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +D+    
Sbjct: 292 MVATDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIRWR 351

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           AI++L+ K      G+ +  +      +  + +  ++     +K   FD  +K      S
Sbjct: 352 AIDRLVNK------GESTPRSEFRSDKNNRKRSFGKRAGGDGKKFNAFDSSRKRTFDGNS 405

Query: 419 HIPLKES 425
           +   ++ 
Sbjct: 406 YGNKRKK 412


>gi|63139086|gb|AAY33860.1| eukaryotic initiation factor 4A [Pennisetum glaucum]
          Length = 414

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 195/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 42  SFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G       + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 102 QLDYGLVE---CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS 158

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 159 GVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKIQVG 218

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 219 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDL--YE 276

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 277 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D +    I+
Sbjct: 337 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMQFDIQ 396

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ L  +++ L
Sbjct: 397 RFYSVVIEELPTNVADL 413


>gi|115474897|ref|NP_001061045.1| Os08g0159900 [Oryza sativa Japonica Group]
 gi|75328149|sp|Q84UQ1|RH42_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 42
 gi|29467560|dbj|BAC66730.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|37806159|dbj|BAC99664.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|113623014|dbj|BAF22959.1| Os08g0159900 [Oryza sativa Japonica Group]
 gi|218200507|gb|EEC82934.1| hypothetical protein OsI_27901 [Oryza sativa Indica Group]
 gi|222639953|gb|EEE68085.1| hypothetical protein OsJ_26125 [Oryza sativa Japonica Group]
          Length = 1049

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 138/448 (30%), Positives = 230/448 (51%), Gaps = 12/448 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   GL+ K++  +   G+ KP  IQ + +P+++   D  GIA+TG+GKT +FVLPML 
Sbjct: 425 TWVQSGLTSKLLDTIKKLGFEKPMSIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLR 484

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++   A V    P  LI+ PTREL  Q+  + +K+ K   +    + GG     Q  +L
Sbjct: 485 HVKDQPAVVPGDGPIGLIMAPTRELVVQIHSDIKKFSKALGINCVAIYGGSGVAQQISEL 544

Query: 120 ERGADVLICTPGRILDHFNR---GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D           +  +  LV+DEADRM DMGF P I  I      
Sbjct: 545 KRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNTRP 604

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT   +++ ++   L  P  I+V   S   + I           +++   L 
Sbjct: 605 DRQTVLFSATFPRQVEILARKVLTKPVEIQVGGRSVVNKDITQLV--EVRPENERFFRLL 662

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL         ++F + +    +L   L + G+   ++HG  DQ  R   L++FK    
Sbjct: 663 ELLGEWFDKGKILVFVHSQDKCDSLLKDLFQHGYPCLSLHGGKDQTDRESTLADFKSNVC 722

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L++A+ +AARGLD+ ++  V N+DVPN  E+Y+HR+GRTGRAGR G A T +++E+ ++
Sbjct: 723 SLLIATSVAARGLDVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKGFAVTFISEEEERY 782

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              + K +E     +  DL  L    ++          + +      +GF   ++   ++
Sbjct: 783 APDLVKALELSEQAVPEDLKGLA---DRFMAKVKQGTEQAHGTGYGGSGFKFNEEEDEAR 839

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           KS    +  E     ++D  ++D+D  G
Sbjct: 840 KSAKKAQAREY--GYEEDKSDSDSDEEG 865


>gi|255712573|ref|XP_002552569.1| KLTH0C07964p [Lachancea thermotolerans]
 gi|238933948|emb|CAR22131.1| KLTH0C07964p [Lachancea thermotolerans]
          Length = 398

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 123/380 (32%), Positives = 209/380 (55%), Gaps = 7/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  V   G+  P+ IQ + I  ++   DV   AQ+GTGKTA+F + ML 
Sbjct: 24  TFESMHLKEDLLRGVYAYGFEAPSAIQSRAITQIISGRDVIAQAQSGTGKTATFTIGMLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     ++    L+L PTRELA Q++      G   N++     GG   +   KKL  
Sbjct: 84  VIDFKSRELQS---LVLSPTRELAKQISQVVGNLGDYMNISAHACTGGKAMQTDTKKLTH 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR--MLDMGFIPYIQNITSLVPFTRQ 179
           G  V+  TPGR+LD   R  L   ++++L++DEAD      +GF   I +I + +P + Q
Sbjct: 141 GCHVVSGTPGRVLDMIKRRILNTRHLKMLILDEADELLSETLGFKQQIYDIFAKLPKSVQ 200

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++ SATM+ ++ ++++ F+ +P +I V     + E I+   V    +  K   L     
Sbjct: 201 VVVVSATMSKDILEITKKFMSDPVKILVKRDEISLEGIKQYHVNVDREEWKFDTLCDLYD 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T    +IFCN KK V  L   L +  F+V ++HG++ Q  R +++++F+ GT +++
Sbjct: 261 SLTITQC--VIFCNTKKVVDWLSSKLLQANFAVASMHGDMKQEDRDRVMNDFRSGTSRVL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P+  ENYIHRIGR+GR GR G A   + ++D + + A
Sbjct: 319 ISTDVWARGIDVQQVSLVINYDLPDNLENYIHRIGRSGRFGRKGVAINFITRDDAQGLKA 378

Query: 360 IEKLIEKKVDWLNGDLSSLN 379
           IEK    K+  +  +L+ L+
Sbjct: 379 IEKHYSVKIRPMPANLAELS 398


>gi|126323567|ref|XP_001370574.1| PREDICTED: similar to R27090_2 [Monodelphis domestica]
          Length = 491

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 144/447 (32%), Positives = 224/447 (50%), Gaps = 17/447 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA LGL+  +V      G   PTP+Q   +P +L+  D  G A+TG+GKTA+FVLP+L 
Sbjct: 3   EFAKLGLASWLVAQCRQLGLKHPTPVQQNCVPAILEGRDCMGCAKTGSGKTAAFVLPILQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +          L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R
Sbjct: 63  KLSE---DPFGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSR 119

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V+I TPGR      +     +  I  LV+DEADR+L+ G   + +++  +       
Sbjct: 120 KPHVVIATPGRLADHLRSSNTFNIKKIRFLVMDEADRLLEQGCTDFTKDLEVIFDAAPAQ 179

Query: 181 LL---FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQ 236
                FSAT+TD L+ +       P   E      T E ++  ++             L 
Sbjct: 180 RQTLLFSATLTDTLKVLQGIATNKPFFWEAPAEVRTVEQLDQRYLLVPEKVKDAYLVHLI 239

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q  Q +    + IIF +  K    L   L +  F   A+H  + Q++R   L+ FK    
Sbjct: 240 QTFQDEHEDWSIIIFTSTCKTCQVLNMMLRRFNFPSVALHSMMKQKARFAALAKFKSSVY 299

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++A+D+A+RGLDIP V  V N + P   + YIHR+GRT RAGR G A TLV + DI  
Sbjct: 300 RILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRDGIAITLVTQYDIHL 359

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK-NYSS 415
           + AIE+ I+ K+   + + +++   L      Q N  R+   I  ++T FD +K+ N   
Sbjct: 360 LHAIEEEIKMKLKDFSVEEATVLKIL-----TQVNVVRRECEIKLEATDFDEKKEINKRK 414

Query: 416 Q---KSHIPLKESEKISKLQQDIQEND 439
           Q   +   P  E+++ ++L +  Q+N 
Sbjct: 415 QLILEGKDPDLEAKRKAELAKIRQKNR 441


>gi|67477952|ref|XP_654408.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56471449|gb|EAL49018.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 432

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 143/393 (36%), Positives = 214/393 (54%), Gaps = 6/393 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL P+V+  V   GY KPT IQ  +IP+ LQ+ D+ GIAQTG+GKTASF+LPM+ 
Sbjct: 10  TFKDLGLIPEVLKVVEYLGYKKPTRIQENSIPVALQKKDIIGIAQTGSGKTASFLLPMVQ 69

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L   + + R    +I+EPTRELAAQV +  ++ GK     T  LL+GG+    Q+ +L 
Sbjct: 70  HLLNVKEKNRGFYCIIIEPTRELAAQVVEVIDEMGKALPGLTSCLLVGGMDVMKQSVQLA 129

Query: 121 RGADVLICTPGRILDHFNRGK---LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +   V++ TPGRI+ H    K     +  ++ LVIDEAD++L+M F   I  +   +P  
Sbjct: 130 KRPQVIVGTPGRIVYHIKNTKGVEESIEKVKFLVIDEADKLLEMDFANEIDYLIEKLPKQ 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R T+LFSATM+ +++K+    L +P +I+                       K       
Sbjct: 190 RTTMLFSATMSTKVEKLQRASLTHPVKIKEEEQKYQTVDTLRQEYCFIPF--KYRDGYLI 247

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   K  IIF  +      L   L + G++   +HG + Q+ R+  L  FK G   
Sbjct: 248 SILKETEGKTIIIFTMKCSGCTKLVMMLRQMGYAAIPLHGKMSQQKRLIALEKFKSGKRG 307

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A+RGLDIP+V  V N+D P   ++Y+HR+GRT RAG+ G A TLV +  I+  
Sbjct: 308 ILVATDVASRGLDIPNVDIVINYDCPLEPKDYVHRVGRTARAGKSGYAITLVTQYSIELY 367

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
             IE +IEKK++    +        +K + A  
Sbjct: 368 QRIETMIEKKLNEYKVNEKEAIAYSQKANEAMR 400


>gi|228963331|ref|ZP_04124496.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228796359|gb|EEM43802.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 510

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 149/365 (40%), Positives = 218/365 (59%), Gaps = 8/365 (2%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
            G+ + TPIQ +TIP  LQ  D+ G AQTGTGKTA+F LP+L  ++  +  V+     ++
Sbjct: 1   MGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKEAVQGI---VI 57

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QV +   K GK+  + +  + GG     Q + L++   +++ TPGRILDH N
Sbjct: 58  APTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHIN 117

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           R  L + N+E +V+DEAD ML+MGFI  I+ I + VP T QTLLFSATM D +++++E F
Sbjct: 118 RKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERF 177

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           +  P+ I+V     T   I+           KK   +   L    + +  I+F   K+ V
Sbjct: 178 MTEPQHIKVKAKEVTMPNIQQ---FYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRV 234

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             L  +L  +G++   IHG++ Q  RM +L  FKEG I+++VA+D+AARGLDI  V HV+
Sbjct: 235 DELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVY 294

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           NFD+P   E+Y+HRIGRTGRAG+ G A   V   +   +  IE+  ++KVD +     +L
Sbjct: 295 NFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEA--PTL 352

Query: 379 NPPLE 383
           +  LE
Sbjct: 353 DEALE 357


>gi|241958200|ref|XP_002421819.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223645164|emb|CAX39763.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 557

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 130/378 (34%), Positives = 203/378 (53%), Gaps = 3/378 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
            F + G    V+  V D G+ KPT IQ +  P+ L   D+ GIA TG+GKT S+ LP  +
Sbjct: 118 TFDEAGFPDYVLQEVKDQGFPKPTAIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIV 177

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P  L+L PTRELA Q+     K+GK+  +    + GG P   Q + L
Sbjct: 178 HINAQPQLQYGDGPIVLVLAPTRELAVQIQTECAKFGKSSRIRNTCVYGGAPKGPQIRDL 237

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG ++ I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 238 ARGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 297

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+Q+++ ++L +P ++ + +    A       V    ++SK+  L++ L 
Sbjct: 298 TLMWSATWPKEVQQLARDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVKHLE 357

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            + +  +N I+     K   +   +     G+   AIHG+ DQ  R  +L  F++G   +
Sbjct: 358 SALNERENKILVFASTKRTCDEITTYLRSDGWPALAIHGDKDQSERDWVLDEFRKGKTSI 417

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARG+D+  + HV N+D+P   E+Y+HRIGRTGR G  G A +     + K   
Sbjct: 418 MVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTDGNSKLGG 477

Query: 359 AIEKLIEKKVDWLNGDLS 376
            + K++ +    +  +L 
Sbjct: 478 DLCKIMREAHQTIPPELQ 495


>gi|255578793|ref|XP_002530253.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223530219|gb|EEF32123.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 1173

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 141/451 (31%), Positives = 229/451 (50%), Gaps = 14/451 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   GL+ K++  +    Y KP PIQ + +P+++   D  GIA+TG+GKT +FVLPML 
Sbjct: 528 TWHQTGLASKILETIKKLNYEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLR 587

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++          P  LI+ PTREL  Q+  + +K+ K   +    + GG     Q  +L
Sbjct: 588 HIKDQPLVEAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISEL 647

Query: 120 ERGADVLICTPGRILDHFNR---GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RG ++++CTPGR++D           +  +  LV+DEADRM DMGF P I  I   +  
Sbjct: 648 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 707

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT   +++ ++   L  P  I+V   S   + I           S++   L 
Sbjct: 708 DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLV--EVRPESERFLRLL 765

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL   +     +IF   +     L   L K G+   ++HG  DQ  R   +S+FK    
Sbjct: 766 ELLGEWNEKGKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 825

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L++A+ +AARGLD+ ++  V NFDVPN  E+Y+HR+GRTGRAGR G A T +++ED ++
Sbjct: 826 NLLIATSIAARGLDVKELDLVVNFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARY 885

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              + K +E     +  DL +L    +   +  +    + +      +GF   K N    
Sbjct: 886 APDLVKALELSEQVVPEDLKALA---DGFMVKVNQGLEQAHGTGYGGSGF---KFNEEED 939

Query: 417 KSHIPLKESEKIS-KLQQDIQENDADSLGFR 446
           +  I  K+++      ++D  +++ +  G R
Sbjct: 940 EKRIAAKKAQAKEYGFEEDKSDSEDEDEGIR 970


>gi|238501386|ref|XP_002381927.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
 gi|220692164|gb|EED48511.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
          Length = 472

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 142/427 (33%), Positives = 224/427 (52%), Gaps = 9/427 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL  ++  A    GY  PT IQ + IPL LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 53  SFKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQ 112

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +      L+L PTRELA Q++  FE  G   ++   +L+GG+   +Q+  L +
Sbjct: 113 AL---MDKPSSFFGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGK 169

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +    N     + N++ LV+DEADR+LDM F P +  I  ++P  R+T
Sbjct: 170 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKVLPRERRT 229

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    LQNP R+ V++  S  +T+     +      K   L    L 
Sbjct: 230 YLFSATMSSKVESLQRASLQNPLRVAVSS--SKFQTVSTLQQSYIFIPHKHKDLYLVYLL 287

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ IIFC        L   L   GF    +HG + Q +R+  L  F+  +  ++V
Sbjct: 288 NEFVGQSCIIFCRTVHETQRLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRDILV 347

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V NFD+P  ++ +IHRIGRT RAG+ G A +   + D++    I
Sbjct: 348 ATDVAARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAISFATQYDVEAWLRI 407

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  + KK+     +   +    E++  AQ +   +     +K      R K ++  K   
Sbjct: 408 EGALGKKLPEYPAEKDEVMVLAERVSEAQRSAILEMKNYDEKKGS---RGKKFAKGKRSR 464

Query: 421 PLKESEK 427
              + E+
Sbjct: 465 EDMDQEE 471


>gi|254437196|ref|ZP_05050690.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
           307]
 gi|198252642|gb|EDY76956.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
           307]
          Length = 435

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 148/371 (39%), Positives = 223/371 (60%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  LGL+P+++  +   G + PTPIQ + IP  +   DV G+A+TG+GKTA+F LPM+
Sbjct: 1   MDFDMLGLAPRLIAELKSQGIIDPTPIQAQAIPHAMNGRDVMGLAKTGSGKTAAFGLPMI 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +   E+G+   +  R LIL PTRELA Q+ +N   Y +  +L   L++GG     Q +K
Sbjct: 61  DMLLKEQGKPEGKTARALILAPTRELAKQIQENLAAYTQGTHLKTMLVVGGAGITGQIRK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG D+L+ TPGR++D   R  + + + + LV+DEAD+MLDMGFI  ++ I  L+   R
Sbjct: 121 LERGVDLLVATPGRLIDLLERRAVRLGDTKFLVLDEADQMLDMGFIHALRQIAPLLAPER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATM   + +++  FL+NP R++V+ P    E IE                    
Sbjct: 181 QTMLFSATMPKLMAELAGAFLKNPMRVQVDAPGKPVERIEQSVHFVAKAAKTDL---LLE 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +   +  I+F   K     L   L  +GF   +IHGN  Q  R + +++FK G +++
Sbjct: 238 LIDKHRDERAIVFGRTKHGSEKLHKLLASKGFLSASIHGNKSQGQRDRAITDFKAGKVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIP+V H++N+D+PN AENY+HRIGRT RAG  G A    A +++  + 
Sbjct: 298 LVATDVAARGLDIPEVKHIYNYDLPNVAENYVHRIGRTARAGADGMAIAFCAPDEMGELR 357

Query: 359 AIEKLIEKKVD 369
            I+K ++  + 
Sbjct: 358 DIQKAMKADIP 368


>gi|169768960|ref|XP_001818950.1| ATP-dependent rRNA helicase RRP3 [Aspergillus oryzae RIB40]
 gi|91207780|sp|Q2UNB7|RRP3_ASPOR RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|83766808|dbj|BAE56948.1| unnamed protein product [Aspergillus oryzae]
          Length = 472

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 142/427 (33%), Positives = 224/427 (52%), Gaps = 9/427 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL  ++  A    GY  PT IQ + IPL LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 53  SFKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQ 112

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +      L+L PTRELA Q++  FE  G   ++   +L+GG+   +Q+  L +
Sbjct: 113 AL---MDKPSSFFGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGK 169

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +    N     + N++ LV+DEADR+LDM F P +  I  ++P  R+T
Sbjct: 170 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKVLPRERRT 229

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    LQNP R+ V++  S  +T+     +      K   L    L 
Sbjct: 230 YLFSATMSSKVESLQRASLQNPLRVAVSS--SKFQTVSTLQQSYIFIPHKHKDLYLVYLL 287

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ IIFC        L   L   GF    +HG + Q +R+  L  F+  +  ++V
Sbjct: 288 NEFVGQSCIIFCRTVHETQRLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRDILV 347

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V NFD+P  ++ +IHRIGRT RAG+ G A +   + D++    I
Sbjct: 348 ATDVAARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAISFATQYDVEAWLRI 407

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  + KK+     +   +    E++  AQ +   +     +K      R K ++  K   
Sbjct: 408 EGALGKKLPEYPAEKDEVMVLAERVSEAQRSAILEMKNYDEKKGS---RGKKFAKGKRSR 464

Query: 421 PLKESEK 427
              + E+
Sbjct: 465 EDMDQEE 471


>gi|37912838|gb|AAR05178.1| putative ATP-dependent RNA helicase [uncultured marine
           proteobacterium ANT8C10]
          Length = 635

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 157/464 (33%), Positives = 245/464 (52%), Gaps = 9/464 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F +LGLS  ++ ++ D  + KP+ IQ + IP++L   ++   AQTGTGKT SFVLPM 
Sbjct: 1   MSFKELGLSEPILKSLEDLEHTKPSEIQQQAIPVILAGKNIMAAAQTGTGKTGSFVLPML 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + E+ +   +    L+L PTRELAAQV ++   YGK  N+T   + GG     Q  KL
Sbjct: 61  EMLHEQAKPYSKNVHALVLTPTRELAAQVRESVHSYGKLTNITSTAVFGGAKIFPQKAKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G D+L+ TPGR+LD  N+  + ++ ++ILV+DEAD MLDMGFI  I+ I ++ P TRQ
Sbjct: 121 KKGVDILVATPGRLLDLVNQKAVKLDQVQILVLDEADHMLDMGFIHDIKKIIAMTPPTRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++K++++       I   +P++T   I+                    +
Sbjct: 181 NLLFSATFSPEIKKLAQSLGDGLVEISAQSPNTTVSKIKQIVYHVDKNKKSDL---LAHM 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++     ++F   K     +   L   G     IHG+  Q +R K L  FK   ++++
Sbjct: 238 IEEEQWDQALVFSKTKHGCEKIADYLNAAGIETGTIHGDKTQGARTKALREFKGKFVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI ++  V NFD+P    +YIHRIGRTGRAG+ G A +L++ ++ K +  
Sbjct: 298 VATDVAARGIDISNLPFVVNFDMPTYPNDYIHRIGRTGRAGQEGTAISLMSSDEHKFLRG 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE L++ K+D  + +      P +K        +R  +P  +K   F R  ++ S  KS 
Sbjct: 358 IEGLLKIKIDQTSHE---AFKPNDKPSGGGRGDSRSRSPRGRK-PAFSRNNRS-SDGKSG 412

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
               +    S    + +     S   R N      P N G   +
Sbjct: 413 NSYSKPGGSSSRPGNAEGRPERSGAGRPNSGGAGRPSNGGGRPN 456


>gi|242310089|ref|ZP_04809244.1| ATP-dependent RNA helicase [Helicobacter pullorum MIT 98-5489]
 gi|239523386|gb|EEQ63252.1| ATP-dependent RNA helicase [Helicobacter pullorum MIT 98-5489]
          Length = 504

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 143/381 (37%), Positives = 216/381 (56%), Gaps = 9/381 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
            G   KV+  + + G+ +P+PIQ + IP++L   DV   AQTGTGKTA+F LP++     
Sbjct: 17  FGFKKKVLDGIREVGFREPSPIQKEVIPIILDGLDVIAQAQTGTGKTAAFALPLVN---- 72

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
           G         L++ PTREL  Q+ D   K GK   +    L GG P + Q + L +   +
Sbjct: 73  GLKHNGSIEALVIAPTRELVMQIGDEIFKLGKYNKVRTVSLFGGQPIQRQVELLAKKPQI 132

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           +I TPGR+LDH   G+L     +I+V+DE+D MLDMGF+  I+ I S +P  RQTLLFSA
Sbjct: 133 VIATPGRLLDHLRNGRLKKFAPQIVVLDESDEMLDMGFLDDIEEIFSYLPSERQTLLFSA 192

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           TM   ++ +++  L NPK +++    +T + I   +     Q  +   +        +  
Sbjct: 193 TMPTPIKHLAQKILHNPKLVKITPSDTTNQDISQRYYIINEQEREDAIVRL---IDSEMP 249

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              IIF   KK    LC  L  +G+   A+HG+++QR R K +  FK+ ++ ++VA+D+A
Sbjct: 250 TKAIIFTRMKKEADLLCERLVDRGYKAGALHGDMEQRERQKSIKAFKDSSVNILVATDIA 309

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARGLDI  V HVFNF +P   E+Y+HRIGRTGRAG+ G A TL    + K +  I++  +
Sbjct: 310 ARGLDISGVSHVFNFHIPLNPESYVHRIGRTGRAGKKGVAITLATPLEFKELRRIKENTK 369

Query: 366 KKVDWLNGDLSSLNPPLEKID 386
            K++    ++ +L   L+K D
Sbjct: 370 AKIELY--EIPNLQDTLDKKD 388


>gi|226509858|ref|NP_001147574.1| ATP-dependent RNA helicase DRS1 [Zea mays]
 gi|195612276|gb|ACG27968.1| ATP-dependent RNA helicase DRS1 [Zea mays]
          Length = 770

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 150/453 (33%), Positives = 226/453 (49%), Gaps = 21/453 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  +V A    GY KPTPIQ   IPL L   D+CG A TG+GKTA+F LP+L 
Sbjct: 163 SFLELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLE 222

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     RV   R LIL PTRELAAQV    EK  +  ++   L++GG+  + Q   L  
Sbjct: 223 RLLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRS 282

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D+++ TPGRI+DH  N   + + ++ ++++DEADR+L++GF   IQ +  + P  RQT
Sbjct: 283 MPDIVVATPGRIIDHLRNSLSVGLEDLAVVILDEADRLLELGFSAEIQELIRMCPKRRQT 342

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+E+ ++ +  L  P R+E +       T+    V            +   L 
Sbjct: 343 MLFSATMTEEIDELIKLSLNKPVRLEADPSLKRPATLTEEVVRIRRARESNQEAVLLALC 402

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   ++ IIF   K++   L       G     +HGN+ Q  R++ L  F++  +  ++
Sbjct: 403 LKTFKRSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFRKQEVDFLI 462

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  V  V NF  P   + Y+HR+GRT RAGR G A T V  +D   + AI
Sbjct: 463 ATDVAARGIDIVGVQTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAI 522

Query: 361 EKLIEKKV------DWLNGDLSSLNPPLE--------------KIDIAQHNHARKNNPIP 400
            K    ++      +    + + L   LE              +   A+   A+  N I 
Sbjct: 523 AKKAGSQLKSRIVAEKPVAECAQLIEQLEDQISIIIREERVEREARKAEMEIAKAENMIA 582

Query: 401 QKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQ 433
            K   + R K+ + + +    L  +     L Q
Sbjct: 583 HKDEIYSRPKRTWFATEREKKLLVAAAKESLGQ 615


>gi|292897893|ref|YP_003537262.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291197741|emb|CBJ44836.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|312170722|emb|CBX78984.1| putative ATP-dependent RNA helicase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 430

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 140/422 (33%), Positives = 212/422 (50%), Gaps = 9/422 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P+V+ A+   G+   TPIQ   +P  L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L         +V  PR LIL PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  HLLSHPAPEGRQVNQPRALILAPTRELAVQIHADAEPLAQITGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G DVLI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDVLIGTTGRLIDYAKQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F        V       +T        +   +++   L Q
Sbjct: 190 SQRLNMLFSATLSFRVRELAFENMNNAEYVEVEPDQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G + 
Sbjct: 249 TLIEEEWPDRTIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG +G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVD--WLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE+ I   +     N D  +  L PP         N  R+     ++S+      +  
Sbjct: 369 TAIEEYIGHSIPVSRYNSDALMGDLPPPKRLTRNRSGNGPRRGGNNNRRSSAPRSPNRKR 428

Query: 414 SS 415
           S 
Sbjct: 429 SG 430


>gi|209879275|ref|XP_002141078.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209556684|gb|EEA06729.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 397

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 205/377 (54%), Gaps = 4/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L  +++  +   G+  P+ +Q + I  +++  DV   +Q+GTGKT  F +  L 
Sbjct: 24  TFESMDLKEELLRGIYSYGFELPSVVQKRAIVPIIKGRDVVVQSQSGTGKTCVFTVGALQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  +   R+  P+ LIL PTRELA Q        G+  ++ V   +GG       K L+ 
Sbjct: 84  LCNRTTERL--PQALILSPTRELAEQSQKVCSALGEYLDINVYCCVGGRKLNDDIKALQS 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR++    +G L+   I +L++DEAD MLD GF   + +I   +P   Q +
Sbjct: 142 GVTIVSGTPGRVIHMIEQGYLITRRIRLLILDEADEMLDFGFKRQVYDIYKYLPPRIQII 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+ +E+ +++E  +++P +I V   + T E I   ++    +  K   L       
Sbjct: 202 LVSATLPEEIIEITEKIMKDPLKILVKRDNLTLEGIRQFYIYVEQEQWKFDTLCDL--YD 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN+K  V  L   + +  F+V  +HG++ Q+ R +IL  F++G  ++++A
Sbjct: 260 TLTITQSVIFCNKKAKVEWLSSKMIENHFTVSFVHGDLSQKDREQILREFRQGKTRVLIA 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  +  V N+D+P   E YIHRIGR+GR GR G A  LV +E++K +  IE
Sbjct: 320 TDLWGRGIDIQQINLVINYDIPTNKELYIHRIGRSGRFGRKGVAINLVKEEEVKILKDIE 379

Query: 362 KLIEKKVDWLNGDLSSL 378
                +++ +  +++S+
Sbjct: 380 HFFSTRIEEMPANITSI 396


>gi|197364704|ref|YP_002144341.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|226739549|sp|B5BIS9|RHLB_SALPK RecName: Full=ATP-dependent RNA helicase rhlB
 gi|197096181|emb|CAR61777.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 421

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 139/413 (33%), Positives = 208/413 (50%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P+VV A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   VP  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRVPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 AQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARK-NNPIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIESYIGHSIPVSKYNPEALMNDLPKPLRLTRSRPGNGPRRAGAPRNRRRSG 421


>gi|168026095|ref|XP_001765568.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683206|gb|EDQ69618.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 413

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 196/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  TFDVMGLHENLLRGIYAYGFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    ++   + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 101 QLDY---QLLECQALVLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTSVREDQRILQA 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  ++I+  V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVYDMLRRNALRADSIKCFVLDEADEMLSRGFKDQIYDIFQLLPQKLQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P +I V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVKILVKRDELTLEGIKQFYVNVDREEWKLDTLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFINTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V KED + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKEDERMLQDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     V+ L  +++ L
Sbjct: 396 RFYNTVVEELPSNVADL 412


>gi|87310130|ref|ZP_01092262.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
 gi|87287120|gb|EAQ79022.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
          Length = 428

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 146/389 (37%), Positives = 231/389 (59%), Gaps = 11/389 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +++AD+ LS ++  A+  A Y++P+PIQ   IPL L+  DV G A+TGTGKTA+F +P++
Sbjct: 4   INYADMALSVEMKAALEAARYIQPSPIQAAIIPLALEGRDVLGQARTGTGKTAAFGIPII 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE G    R P+ LIL PTRELA QV D   K      + V  + GG P  +Q +KL+
Sbjct: 64  ERLEHGPNS-RNPQALILTPTRELAVQVRDEIAKLTHGQRINVVAVYGGKPLRSQMEKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   +++ TPGR++D   R  L +  +  +V+DEADRMLD+GF P I+ I    P  RQT
Sbjct: 123 RAPHIVVGTPGRVIDLMTRRALQLEMLRTVVLDEADRMLDIGFRPDIEKILRRCPEERQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL SAT+   ++K+++ +++NP++++ +  + +AETIE  +             +   L 
Sbjct: 183 LLLSATVPPTIEKLAQRYMRNPEKVDFSPTNISAETIEQRYFTVDHSKK---FDMLVELL 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  I+FC  K+    +   L K+   V  IHG++ Q +R + LS+FK    +++V
Sbjct: 240 KREQPQKAIVFCRTKRGTERITQRLSKKTKLVHCIHGDMQQGARNRALSDFKASKFRVLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+  RG+DI DV H+ N+D+P  +++Y+HR+GRTGR G+ G A+T V  E+   +  I
Sbjct: 300 ATDVVGRGIDISDVSHIINYDIPEFSDDYVHRVGRTGRMGKEGIAYTFVTPEEGNELTRI 359

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDI 387
           E  I+K +  D L G       P E+ D+
Sbjct: 360 EVRIDKLLIRDELPGF-----APYERTDV 383


>gi|193666978|ref|XP_001948493.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Acyrthosiphon pisum]
          Length = 666

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 148/462 (32%), Positives = 224/462 (48%), Gaps = 12/462 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F ++ L   V   V   G+  PTPIQ  + P+ L   ++ GIAQTG+GKT +++LP +
Sbjct: 122 MNFNEVILPDYVFNEVKKQGFNNPTPIQAVSWPIALSGRNMVGIAQTGSGKTLAYMLPAI 181

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA Q+      +G +  +    + GG P   Q   
Sbjct: 182 LHINHQPRLLRYDGPIVLVLAPTRELAQQIQQVAVSFGTSTFVRNTCVFGGAPKGPQVDD 241

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG +++I TPGR++D   R    +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 242 LERGVEIVIATPGRLIDFLERNTTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 301

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQ 237
           Q L++SAT   E++ ++E FL +  ++ V + + +A       V     Y K+       
Sbjct: 302 QVLMWSATWPPEVKNLAEEFLDDYIQVNVGSLNLSANHNISQVVDVCDDYEKEQKLYALL 361

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      IIF   K++V N+   + + G+    IHGN  Q  R   L+ F+ G   
Sbjct: 362 TDIFSQPDNKTIIFVETKRSVDNIVKLVNRNGWRSIGIHGNKSQNERDHTLNQFRSGQAN 421

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+ DV +V NFD PN +E+Y+HRIGRTGR+ R G AFT V   + +  
Sbjct: 422 ILVATDVAARGLDVDDVKYVINFDYPNSSEDYVHRIGRTGRSSRTGTAFTFVTPSNARQA 481

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPP-----LEKIDIAQHNHARKNNPIPQKSTGFDRR--K 410
             +  ++++    +N  L  L          K+D  + N +R       +  G   R  +
Sbjct: 482 KDLISVLQEAKQVVNPKLFELAEMAAAGVFGKMD--RTNRSRDRGGQNNRGRGNHDRGSR 539

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAF 452
            NY S         S             D+ + G +G    F
Sbjct: 540 GNYGSGGRGTYRGGSRGGYLGGSHSSSRDSYTSGNQGGRSGF 581


>gi|167035034|ref|YP_001670265.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida GB-1]
 gi|166861522|gb|ABY99929.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 453

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 137/436 (31%), Positives = 220/436 (50%), Gaps = 8/436 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 15  FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +      R+LIL PTRELA Q     + + +   +   L+ GG  F+ Q   L + 
Sbjct: 75  LVDLKGGRVEIRSLILLPTRELAQQTLKQVQLFSQFTYVKAGLVTGGEDFKEQAAMLRKV 134

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+L+  N G L ++++++L++DEADRMLDMGF   ++ +        QTLL
Sbjct: 135 PDVLIGTPGRLLEQLNAGNLDLSHVKVLILDEADRMLDMGFAEDMERLCKECENREQTLL 194

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT T                  +   S +            A + +    + Q L + 
Sbjct: 195 FSAT-TGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLLAN 253

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T    IIF N +     +   L  +      +HG  DQ+ R   +  FK+G+ +++VA+
Sbjct: 254 ETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVAT 313

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  +  V NFD+P   + Y+HR+GRTGRAG  G A +L+   D   + +IE+
Sbjct: 314 DVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSIER 373

Query: 363 LIEKK-----VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            ++++     +  + G  S   P   K         +K             ++K  +  +
Sbjct: 374 YLKQQFERRVIKEVKGTYSG--PKKVKASGKAVGAKKKKVDKKTGDKKAAAKRKPTAKPR 431

Query: 418 SHIPLKESEKISKLQQ 433
           ++ PL  ++ ++ L++
Sbjct: 432 ANAPLASADGLAPLKK 447


>gi|126138430|ref|XP_001385738.1| RNA helicase of DEAD box family [Scheffersomyces stipitis CBS 6054]
 gi|146286118|sp|A3LWX3|DHH1_PICST RecName: Full=ATP-dependent RNA helicase DHH1
 gi|126093016|gb|ABN67709.1| RNA helicase of DEAD box family [Scheffersomyces stipitis CBS 6054]
          Length = 509

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 120/375 (32%), Positives = 185/375 (49%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L  +++  + +AG+ KP+PIQ ++IP+ L   DV   A+ GTGKTASF++P   
Sbjct: 31  SFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDVLARAKNGTGKTASFIIP--- 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L++ + ++   + LIL PTRELA Q +      GK+  +   +  GG   +    +L  
Sbjct: 88  SLQQIKPKLNKIQALILVPTRELALQTSQVVRTLGKHLGIQCMVTTGGTSLKDDILRLND 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL+ TPGR+LD   R    ++   + V+DEAD+ML   F   I+ I    P  RQ+L
Sbjct: 148 PVHVLVGTPGRVLDLAARSVADLSECPLFVMDEADKMLSREFKGIIEQILEFFPKNRQSL 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F+                T+            K+       L S
Sbjct: 208 LFSATFPLAVKS----FMDKHLNKPYEINLMDELTLRGITQYYAFVEEKQKLHCLNTLFS 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S    H  + Q++R K+   F++G ++ +V 
Sbjct: 264 KLQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVC 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L++  D   +  IE
Sbjct: 324 SDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYSLYKIE 383

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 384 QELGTEIKPIPATID 398


>gi|332289731|ref|YP_004420583.1| ATP-dependent RNA helicase SrmB [Gallibacterium anatis UMN179]
 gi|330432627|gb|AEC17686.1| ATP-dependent RNA helicase SrmB [Gallibacterium anatis UMN179]
          Length = 447

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 133/432 (30%), Positives = 218/432 (50%), Gaps = 5/432 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F +  L P+++ A+   G  +PT IQI+ IP  +  HDV G + TGTGKT +F+LP + 
Sbjct: 5   NFDEFDLDPQLLKALAKKGLNRPTAIQIEAIPAAMDGHDVLGSSPTGTGKTIAFLLPAIQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR L+L PTRELA QVA+  ++  +  +L++A + GG+ ++   +   
Sbjct: 65  HLLDFPRRKPGAPRVLVLTPTRELAMQVAEQAQQLAQFTSLSIATITGGVAYQNHGEIFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D++I TPGR+L +          +EIL+ DEADRML MGF    + I +   + +QT
Sbjct: 125 KNQDMVIATPGRLLQYIQEENFDCRAVEILIFDEADRMLQMGFGQDAERIAAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ +  +  S         +EVN   S  E  +      +A   +    L   + 
Sbjct: 185 MLFSATL-EGEELNSFAQRLLDNPVEVNAEPSRRERKKIQQWYYHADSKEHKIKLLARVI 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +  GI+F   ++ V  L   L K+G     + G + Q  R   +   ++G + ++V
Sbjct: 244 VDEKVSKGIVFVRHREEVRELAEILRKRGIRSTYLEGEMAQTQRNNAIEKLRDGVVTILV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+++AARG+DI D+ HVFNFD+P  A+ Y+HRIGRT RAG+ G A + V   D   +  I
Sbjct: 304 ATNVAARGIDIDDISHVFNFDLPYNADVYLHRIGRTARAGKKGCAISFVEAHDYPLLGKI 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
            +      + L   +     P  K                       + K+  S +K  +
Sbjct: 364 CRYTG---EILKARVIEDLAPRTKAPKVNEIKKVIKKKKAHLKQKRQQAKEQTSKKKVKL 420

Query: 421 PLKESEKISKLQ 432
             ++S+ I K +
Sbjct: 421 RHRDSKNIGKRR 432


>gi|152013506|sp|Q6BJX6|DHH1_DEBHA RecName: Full=ATP-dependent RNA helicase DHH1
          Length = 516

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 129/412 (31%), Positives = 202/412 (49%), Gaps = 11/412 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L  +++  + +AG+ KP+P+Q ++IP+ L   D+   A+ GTGKTASFV+P   
Sbjct: 31  TFEDFPLKRELLMGIFEAGFEKPSPVQEESIPMALAGRDILARAKNGTGKTASFVIP--- 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L++ R +V   + LIL PTRELA Q +      GK+  L   +  GG        +L  
Sbjct: 88  CLQQARPKVNKIQALILVPTRELALQTSQVVRTLGKHLGLQCMVTTGGTSLRDDILRLND 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL+ TPGR+LD  +R    ++   + V+DEAD+ML   F   I+ I +  P TRQ+L
Sbjct: 148 PVHVLVGTPGRVLDLASRKVADLSECPLFVMDEADKMLSREFKGIIEQILAFFPTTRQSL 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F+                T+            K+       L S
Sbjct: 208 LFSATFPLAVKS----FMDQHLTKPYEINLMDELTLRGISQFYAFVEEKQKLHCLNTLFS 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S    H  + Q +R K+   F++G ++++V 
Sbjct: 264 KLQINQAIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQHARNKVFHEFRQGKVRVLVC 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L++  D  ++  IE
Sbjct: 324 SDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYNLYKIE 383

Query: 362 KLIEKKVDWLNGDL-SSLNPPLEKIDIAQH---NHARKNNPIPQKSTGFDRR 409
           + +  ++  +   +  SL     +  + +    +   K N    K +G++ +
Sbjct: 384 QELGTEIKPIPATIDKSLYVAENEAAVPRPFKIDQLPKGNETVHKKSGYEYK 435


>gi|60115445|dbj|BAD90013.1| p68 RNA helicase [Tubifex tubifex]
          Length = 490

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 136/402 (33%), Positives = 214/402 (53%), Gaps = 10/402 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F +  L   V   +    + +PTPIQ +  P+ L   D+ GIAQTG+GKT S++LP  
Sbjct: 61  LTFQEACLPDYVQLILRQQNWTQPTPIQAQGWPIALSGLDIVGIAQTGSGKTLSYILPAI 120

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +    +        P  L+L PTRELA QVA   + +G   ++    + GG P   Q + 
Sbjct: 121 IHINHQPRLQYGDGPVCLVLVPTRELAQQVAQVAQLFGNTSSVRNVCVYGGAPKGPQIRD 180

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RGA++ I TPGR++D  + GK  +     LV+DEADRMLDMGF P I+ I   V   R
Sbjct: 181 LQRGAEICIATPGRLIDLLDAGKTNLQRCTYLVLDEADRMLDMGFEPQIRKILEQVRPDR 240

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQ 237
           QTL++SAT   E+++++E FL +  +I + +   TA       V   ++  K+       
Sbjct: 241 QTLMWSATWPKEVKQLAETFLTDYIQINIGSTQLTANHSILQIVDVCSEEEKESKLNRLL 300

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                ++    ++F   K+   +L + +++ G+    IHG+  Q  R  +L +F+ G I 
Sbjct: 301 QEIMGESNNKTMVFVETKRRANDLAYKMKRAGWMAACIHGDKSQEERDSVLRDFRNGRIP 360

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+ DV  V NFD PN +E+Y+HRIGRTGRAG  G A+TL   ++    
Sbjct: 361 ILVATDVAARGLDVDDVKFVVNFDYPNCSEDYVHRIGRTGRAGHTGTAYTLFTPKNAPKA 420

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
             +       ++ L      +NP L ++     ++ R  +  
Sbjct: 421 RDL-------IEVLTEANQQINPKLSQLMSTARDYGRDRSRF 455


>gi|229091449|ref|ZP_04222660.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-42]
 gi|228691890|gb|EEL45636.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-42]
          Length = 454

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 145/409 (35%), Positives = 232/409 (56%), Gaps = 14/409 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           EK +   +     +     P ++++D    N      P P+KS  + +R
Sbjct: 360 EKTLGAPIQREIIE----QPKIKRVD---ENGKPLPKPAPKKSGEYRQR 401


>gi|2558535|emb|CAA72735.1| RNA helicase (DEAD box) [Danio rerio]
          Length = 700

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 142/431 (32%), Positives = 225/431 (52%), Gaps = 31/431 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 261 MTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 320

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                        + ++ P  +I+ PTREL  Q+     K+     +   ++ GGI    
Sbjct: 321 QRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGY 380

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
             +++ +G +VL  TPGR+ D   RGK+ ++ +  LV+DEADRMLDMGF P ++      
Sbjct: 381 TIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEPEMRKLVASP 440

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++Q+++ +FL+             A +     +    QYSK
Sbjct: 441 GMPSKEKRQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQVDQYSK 500

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  LL+ L  + +  +  ++F   K++   +   L ++  S  +IHG+ +QR R K LS+
Sbjct: 501 RDQLLELLRATGN--ERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSD 558

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI  V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 559 FRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFFN 618

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            E D     ++       V  L+G    +   LE++  + H            +TGF+ R
Sbjct: 619 PESDTPLARSL-------VKVLSGAQQVVPKWLEEVAFSAH-----------GTTGFNPR 660

Query: 410 KKNYSSQKSHI 420
            K ++S  S  
Sbjct: 661 GKVFASTDSRK 671


>gi|219110339|ref|XP_002176921.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411456|gb|EEC51384.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 529

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 127/381 (33%), Positives = 206/381 (54%), Gaps = 3/381 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  +   V+  VL  G+ KPTPIQ +  P+ L+  ++ G++ TG+GKT +F+LP +
Sbjct: 130 MTFDEASMPEYVLNEVLKCGFDKPTPIQSQGWPMALKGRNMVGVSATGSGKTLAFLLPAM 189

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +           P  L+L PTRELA Q+ +  +K+G +  +   ++ GG+    Q ++
Sbjct: 190 IHINAQPYLKPGDGPIVLVLAPTRELAVQIKEECDKFGSSSEIKNTVVYGGVKKHTQLRE 249

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  GA++ I TPGR++DH  +G   +  +  LV+DEADRMLDMGF P ++ I S +   R
Sbjct: 250 LRAGAEICIATPGRLIDHLEQGNTNLKRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDR 309

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L++SAT   E+Q ++ ++LQ+  ++ V +   +A       +       K   L + L
Sbjct: 310 QVLMWSATWPKEVQALANDYLQDFYQVTVGSLDLSANKDVTQIIEVCTDMDKYRNLQRYL 369

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            ++       ++F   KK    L  SL   GF   A+HG+  Q  R   L  FK     L
Sbjct: 370 RENLSPKDRVLVFVETKKGCDMLTRSLRSDGFQARAMHGDKSQEERDWALREFKGMQSTL 429

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHI 357
           +VA+D+AARGLD+ D+  V NFD P   ++YIHR+GRTGRAG+ G A +    + + +  
Sbjct: 430 LVATDVAARGLDVDDIRIVVNFDFPKEMDSYIHRVGRTGRAGKKGFAVSFFVPDKNARLA 489

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             +  ++ +    +  +L +L
Sbjct: 490 RELVDILNRTSQNVPQELQAL 510


>gi|189464961|ref|ZP_03013746.1| hypothetical protein BACINT_01305 [Bacteroides intestinalis DSM
           17393]
 gi|189437235|gb|EDV06220.1| hypothetical protein BACINT_01305 [Bacteroides intestinalis DSM
           17393]
          Length = 659

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 140/412 (33%), Positives = 234/412 (56%), Gaps = 17/412 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
           +F +LGLSP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++
Sbjct: 3   NFEELGLSPEIRRAIEEMGYECPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             +     + R+P++LIL PTREL  Q+A +   Y K    L V  + GG   ++Q + L
Sbjct: 63  QKINV---KNRIPQSLILCPTRELCLQIAGDLNDYSKYITGLRVLPVYGGSSIDSQIRAL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G  +++ TPGR+LD   R  + +  I+ +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KQGVHIIVATPGRLLDLMERKTVSLTTIQNVVMDEADEMLNMGFTDSINAILADVPQERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+ +L++ K I +   +   E+  +     +  ++K      + +
Sbjct: 180 TLLFSATMSPEIARISKKYLRDAKEITIGRKN---ESTSNVKHVVFTVHAKDKYAALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L + G++  ++HG + Q  R  ++  F+   +Q++
Sbjct: 237 VDYYPQIYGIIFCRTRKETQEIADKLMQDGYNADSLHGELSQAQRDAVMQKFRIRNLQIL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRE 356

Query: 360 IEKLIEKK--VDWLN-------GDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           IE++I KK  +  +          L  +   LEK+ + + + A     I +K
Sbjct: 357 IERIISKKFIIGEMPTGKQICEKQLLKVIDDLEKVKVNEEDMADFMPEIYRK 408


>gi|32267267|ref|NP_861299.1| ATP-dependent RNA helicase DeaD [Helicobacter hepaticus ATCC 51449]
 gi|32263320|gb|AAP78365.1| ATP-dependent RNA helicase DeaD [Helicobacter hepaticus ATCC 51449]
          Length = 530

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 135/372 (36%), Positives = 209/372 (56%), Gaps = 7/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL   V+  + +AG+  P+P+Q ++IP++LQ  D+   AQTGTGKTA+F +P+L  
Sbjct: 47  FDVFGLKDFVLKGIREAGFSTPSPVQSQSIPIILQGKDLIAQAQTGTGKTAAFAIPILNT 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                 R +    LI+ PTRELA Q+++   K G+   +    + GG   + Q   LE+ 
Sbjct: 107 ----LNRNKDIEALIITPTRELAMQISEEILKLGRFGRIKTICMYGGQSIKRQCDLLEKK 162

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
              +I TPGR+LDH   G++   + +I+V+DE+D MLDMGF+  I+ I   +P TRQTLL
Sbjct: 163 PKAMIATPGRLLDHLQNGRIAHFSPQIVVLDESDEMLDMGFLDDIEEIFKFLPNTRQTLL 222

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + ++ ++   L  P  +++     T + IE  +         +  +        
Sbjct: 223 FSATMPEPIKALAMKILNEPAFVKITPTDVTNQDIEQQYYIINEGERDEAIVRL---IET 279

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   KK    L   L  +GF   A+HG+++QR R + +  F+E  I+++VA+
Sbjct: 280 QNPTKSIIFTRMKKEADALAIRLANRGFKAIALHGDMEQRDRREAIKAFRENKIEILVAT 339

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDI DV HVFN+ +P   E+Y+HRIGRTGRAG+ G A TL    + K +  I++
Sbjct: 340 DVASRGLDISDVSHVFNYHIPLNPESYVHRIGRTGRAGKKGVAVTLATPLEYKDLSKIKQ 399

Query: 363 LIEKKVDWLNGD 374
           + + K+      
Sbjct: 400 ITKAKLKLCEIK 411


>gi|141796059|gb|AAI34864.1| LOC556764 protein [Danio rerio]
          Length = 519

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 132/380 (34%), Positives = 203/380 (53%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F        V+  +L   + +PT IQ +  PL L   D+ GIAQTG+GKT +++LP + 
Sbjct: 96  SFHQAQFPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIV 155

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       R   P  L+L PTRELA QV      YGK+  +    + GG P   Q + L
Sbjct: 156 HINHQPYLERGDGPICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDL 215

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 216 ERGVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 275

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+++++E+FLQ+  +I +     +A       V    +  K   L+Q + 
Sbjct: 276 TLMWSATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLME 335

Query: 240 QSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   +     IIF   KK    L   + + G+    IHG+  Q  R  +L+ F+ G   +
Sbjct: 336 EIMAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPI 395

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     +++   
Sbjct: 396 LIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQAR 455

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + +++E+    +N  L  L
Sbjct: 456 DLVRVLEEARQAINPKLLQL 475


>gi|17545671|ref|NP_519073.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
 gi|17427964|emb|CAD14654.1| putative atp-dependent rna helicase protein [Ralstonia solanacearum
           GMI1000]
          Length = 608

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 144/385 (37%), Positives = 223/385 (57%), Gaps = 23/385 (5%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-- 63
           LGL  ++  A+ +  Y +PTP+Q + IP  L   D+   +QTG+GKTA+F+LP +  +  
Sbjct: 35  LGLDERIARALGELNYTQPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFMLPAIQRISE 94

Query: 64  ------------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVA 104
                              + R     P  L+L PTRELA QV     +YG++   +  A
Sbjct: 95  QPEPQRPRADGPQQRVKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRRIVCA 154

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
            ++GG+P+  Q   L R  D++I TPGR+LDH + G++ ++ +++LV DEADRMLDMGF 
Sbjct: 155 SILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFA 214

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
             I+ I    P +RQ L+FSATM   +++++E  ++ P+RIE+         IE     T
Sbjct: 215 DDIEAIVGATPASRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARIDQSHIEERLHFT 274

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                K    L   L    T+K  I+F   K++  +L   L + GFS  A+HG++ Q +R
Sbjct: 275 DDLSHK--QQLLDHLLRDATLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQGAR 332

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + L+  + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR G 
Sbjct: 333 NRTLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGI 392

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVD 369
           A  LV   D      IE+ +++++D
Sbjct: 393 AINLVNHGDTFQWRRIERFVDRRID 417


>gi|300855475|ref|YP_003780459.1| putative ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300435590|gb|ADK15357.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 369

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 133/375 (35%), Positives = 213/375 (56%), Gaps = 6/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF +L LS  ++  +   G  KPTPIQ ++I  + +  DV   AQTGTGKT +F+LP+ 
Sbjct: 1   MDFKELELSENIINELKHMGITKPTPIQQESIKFIREGKDVIAEAQTGTGKTLAFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      +   + LI+ PTRELA Q+ +   K  K  ++ +    GG    +Q KKL+
Sbjct: 61  ENISPN---INSTQALIVTPTRELAIQITEEALKLKKAKDINILAAYGGKDIGSQLKKLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++I TPGR+LDH +R  + ++ ++ LV+DEAD+ML MGF   +++I   V   RQT
Sbjct: 118 RNIHLIIATPGRLLDHLHRKTIDLSKLKTLVLDEADQMLLMGFKNDVEDIIKEVSKKRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  +++K++  ++ +P  + +     T   I            +K       + 
Sbjct: 178 LCFSATMNSDVKKLAYRYMTDPLVVSIKKEKVTLNNI---KQYVIETTDRKKQDALCNII 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     IIFC  K+ V +L  +L ++G++   +H +I Q  R +I+ +F+   IQ ++
Sbjct: 235 DQDNPFMAIIFCRTKRRVDDLEIALYQRGYNCKKLHSDIPQSKRERIMKSFRNADIQYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V H++N+D+P   E+YIHRIGRTGRAG  G     V  +D + ++ I
Sbjct: 295 ATDVAARGLDISGVTHIYNYDIPENVESYIHRIGRTGRAGEEGCTCLFVDPKDKRTLEEI 354

Query: 361 EKLIEKKVDWLNGDL 375
           E+ I+ ++     ++
Sbjct: 355 ERGIKFRIPRRELNI 369


>gi|289620618|emb|CBI52979.1| unnamed protein product [Sordaria macrospora]
          Length = 1190

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 132/459 (28%), Positives = 219/459 (47%), Gaps = 9/459 (1%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
             ++  GL+  ++  +   GY KPTPIQ++ +P+++   DV G+A+TG+GKT +F LP+  
Sbjct: 556  KWSQCGLTRPILDTIESLGYEKPTPIQMQALPVIMSGRDVIGVAKTGSGKTMAFALPLLR 615

Query: 60   LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                +           LI+ PTREL  Q+  + + + K   L V    GG   + Q  +L
Sbjct: 616  HVKDQDPVTGDDGAIALIMTPTRELCTQIYSDLQPFAKALKLRVVAAYGGNAIKDQIAEL 675

Query: 120  ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +RGA++++ TPGR++D           +     LV+DEADRM DMGF P +  I + V  
Sbjct: 676  KRGAEIIVATPGRLIDLLAANGGRVTNLKRATYLVLDEADRMFDMGFEPQVMKIFNNVRP 735

Query: 177  TRQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT+LFSATM   +     +      +           E  +   V    +   +   L
Sbjct: 736  DRQTILFSATMPRIIDSLTKKVLRDPVEITVGGRSVVAPEITQIVEVMDEGKKFNRLLEL 795

Query: 236  QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
               L + D     +IF  +++   +L   L ++G+   +IHG  DQ  R   +S+FK+G 
Sbjct: 796  LGELYADDDDVRSLIFVERQEKADDLLRELLRRGYGCMSIHGGKDQEDRNSTISDFKKGV 855

Query: 296  IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
              +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + +E   
Sbjct: 856  CPILIATSIAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQEN 915

Query: 356  HIDAIEKLIEKKVDWLNGDLSSLNPP-LEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                I K +E+    +   L+ +     EK+   +   A        +    DR      
Sbjct: 916  CASGIAKALEQSGQPVPDRLNEMRKAWKEKVKAGKAKDASGFGGKGLEKLDKDREAARMR 975

Query: 415  SQKSHIPLKESEKISK--LQQDIQENDADSLGFRGNMPA 451
             +K+H    E + + +    +D ++ D   +  +  + A
Sbjct: 976  ERKTHKAEGEEDDVKEDAPAEDGEKKDKTKVAIQSAVSA 1014


>gi|330961645|gb|EGH61905.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 442

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 145/372 (38%), Positives = 217/372 (58%), Gaps = 5/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV ++  +Y ++  L+     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD + +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLYRQKAIKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A ++            K+ A L   
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSV---KQWVVTVDKKRKADLFIH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +      ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 238 LMKKHRWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVDW 370
           AIE L  + ++ 
Sbjct: 358 AIEVLTRQTLER 369


>gi|320185441|gb|EFW60210.1| ATP-dependent RNA helicase RhlB [Shigella flexneri CDC 796-83]
          Length = 421

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 137/413 (33%), Positives = 206/413 (49%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKVV  +   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVVEILEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNN-PIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGAPRNRRRSG 421


>gi|196231991|ref|ZP_03130847.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
 gi|196224113|gb|EDY18627.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
          Length = 405

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 169/412 (41%), Positives = 231/412 (56%), Gaps = 9/412 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D GL  +VV  V   GY+ PTPIQ++  P++L   D+ G AQTGTGKTA+F LP+L
Sbjct: 1   MSFQDFGLLDEVVHGVQSMGYIDPTPIQLRAFPIILSGRDMMGSAQTGTGKTAAFALPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T L+         R LILEPTRELAAQV   F  Y +  ++ V L+ GG+ F +Q   L+
Sbjct: 61  TKLKSH----GDLRALILEPTRELAAQVETAFRDYSRFMDVQVGLVHGGVGFGSQRSMLQ 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GADVL+ TPGR+LD    G   + NI+ LV+DE DRMLDMGF+P ++ I   VP  RQT
Sbjct: 117 KGADVLVATPGRLLDFLEDGTANLKNIQYLVLDEVDRMLDMGFLPQVRRIVDRVPKERQT 176

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+  EL+ +++  L++P+++E+    S AET+ H              +      
Sbjct: 177 LFFSATLPPELETMTKWLLKDPEQVEIGARRSPAETVTHALYPVAKDQKFDLLIALL--- 233

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + IIF + K     + H L+    SV  +H N  QR R   L+ FK G  ++MV
Sbjct: 234 ERTKFDSAIIFTSTKIMADKVAHRLKDLKHSVAVLHSNRTQREREDALAGFKSGKYEVMV 293

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV N+DVP   E+Y+HRIGRTGRA   G AFT+   E++ H+ +I
Sbjct: 294 ATDIAARGLDIAGVSHVINYDVPQHPEDYVHRIGRTGRALLTGDAFTIFTAEELDHVRSI 353

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           E+ I  K+    L G          +  I      +        S G  RRK
Sbjct: 354 ERFIGAKITRQKLEGFDYLYTALFNEEQIPAGGVGKGVRTAKGYSFGARRRK 405


>gi|187931712|ref|YP_001891696.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712621|gb|ACD30918.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 441

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 150/403 (37%), Positives = 237/403 (58%), Gaps = 8/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGL+  +  A+   GY K TPIQ + IP+VL+ +DV   AQTGTGKTA F LP++
Sbjct: 1   MKFSDLGLNSLICSALEKKGYTKLTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L++ +A+    +TLIL PTRELAAQ+ +  + Y  N ++  A++ GG+    Q  KL
Sbjct: 61  QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GA++LI TPGR+LD +++  +  +++   V+DEADRMLDMGFI  ++ I +L+P   Q
Sbjct: 121 RKGAEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT + E++ ++  FL NP+ +  +  ++T + I                +     
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   ++F   K     +   L   G S  AIHGN  Q +R K L++FK   I ++
Sbjct: 238 IKDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  +  V N D+ N AE+Y+HRIGRTGRAG+ G A +L++ ++++ +  
Sbjct: 298 VATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLISADEVESLSN 357

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           IE LI   +  + L G  ++ N P+  +  +    A+K + + 
Sbjct: 358 IEHLIGHLLPREELEGFEATHNVPITSM--SHKTKAKKIDEVK 398


>gi|19309904|emb|CAC84069.1| vasa-like protein [Danio rerio]
          Length = 715

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 142/431 (32%), Positives = 225/431 (52%), Gaps = 31/431 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 276 MTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 335

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                        + ++ P  +I+ PTREL  Q+     K+     +   ++ GGI    
Sbjct: 336 QRFMTDGVAASKFSEMQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGY 395

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
             +++ +G +VL  TPGR+ D   RGK+ ++ +  LV+DEADRMLDMGF P ++      
Sbjct: 396 TIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEPEMRKLVASP 455

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++Q+++ +FL+             A +     +    QYSK
Sbjct: 456 GMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQVDQYSK 515

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  LL+ L  + +  +  ++F   K++   +   L ++  S  +IHG+ +QR R K LS+
Sbjct: 516 RDQLLELLRATGN--ERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSD 573

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI  V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 574 FRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFFN 633

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            E D     ++       V  L+G    +   LE++  + H            +TGF+ R
Sbjct: 634 PESDTPLARSL-------VKVLSGAQQVVPKWLEEVAFSAH-----------GTTGFNPR 675

Query: 410 KKNYSSQKSHI 420
            K ++S  S  
Sbjct: 676 GKVFASTDSRK 686


>gi|126728206|ref|ZP_01744022.1| putative ATP-dependent RNA helicase protein [Sagittula stellata
           E-37]
 gi|126711171|gb|EBA10221.1| putative ATP-dependent RNA helicase protein [Sagittula stellata
           E-37]
          Length = 425

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 144/371 (38%), Positives = 216/371 (58%), Gaps = 5/371 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LGL P+++  + D     PTPIQ + IP  L   DV G+AQTGTGKTA+F LP++T + +
Sbjct: 2   LGLPPRLLTNLADLNITDPTPIQSQAIPHALNGRDVMGLAQTGTGKTAAFGLPIVTTIMR 61

Query: 66  GRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            + R    +    IL PTRELA Q+ DN   Y  N  + + L+ GG     Q  +L +G 
Sbjct: 62  DQTRPGPKQVHGLILAPTRELAKQIVDNLRAYAANTPVKIGLVTGGNSINGQINRLAKGT 121

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
           D+L+ TPGR++D   +  + ++    LV+DEAD+MLD+GFI  ++ I  ++P  RQT+LF
Sbjct: 122 DLLVATPGRLIDLMEQKAVRLDATRFLVLDEADQMLDLGFIHALRQIARVLPKERQTMLF 181

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM  ++ +++  +L +P RIEV  P    E IE           K    L        
Sbjct: 182 SATMPKQMAEIASAYLTDPVRIEVTPPGKPVERIEQSVHFVEQ---KAKTPLLVHHLDLH 238

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +  ++F   K     L   LE +GF+  +IHGN  Q  R + L  F+EG + ++VA+D
Sbjct: 239 RTEAALVFARTKHGAEKLKRHLEDKGFAAGSIHGNKSQGQRDRALKAFREGELTVLVATD 298

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARG+DIP V +V+N+D+PN A+NY+HRIGRT RAGR G A    + E++    AI K+
Sbjct: 299 VAARGIDIPSVRYVYNYDLPNVADNYVHRIGRTARAGRDGTAIAYCSAEEMGEFKAIVKV 358

Query: 364 IEKKVDWLNGD 374
           + +++   +G+
Sbjct: 359 MGREIAVASGE 369


>gi|50543676|ref|XP_500004.1| YALI0A12133p [Yarrowia lipolytica]
 gi|74660195|sp|Q6CH58|RRP3_YARLI RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|49645869|emb|CAG83933.1| YALI0A12133p [Yarrowia lipolytica]
          Length = 480

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 134/414 (32%), Positives = 223/414 (53%), Gaps = 9/414 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +     +  + KPTPIQ ++IP  L+  D+ G+AQTG+GKTA+F +P+L 
Sbjct: 65  TFKDLGVIDSICETCEELKFTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQ 124

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            L +    +      +L PTRELA Q+++ FE  G    L  A+++GG+    Q     +
Sbjct: 125 SLYENPQPLYCV---VLAPTRELAYQISETFEALGSAMGLRTAVVVGGMNMMTQAVALSK 181

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      +    N     +  ++ LV+DEADR+LDM F P +  I  ++P  R T
Sbjct: 182 KPHVIVATPGRLVDHLENTKGFSLRTLKFLVMDEADRLLDMEFGPSLDKILKVIPRQRNT 241

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT +++K+    L +P R+ V+T   TA+ +    V       K        L 
Sbjct: 242 YLFSATMTSKVEKLQRASLVDPVRVAVSTKYQTADNLLQYMVFCPF---KHKDTHLVYLV 298

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S++   + IIF   K +   +   L   G+    +HG++ Q +R+  L+ FK G+  +++
Sbjct: 299 SENAGNSMIIFARTKSDTQRISLLLRNLGYGAIPLHGDLSQTARLGALNKFKSGSRNILI 358

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V N+D+P+ +++YIHR+GRT RAGR GK+  LV++ D++    I
Sbjct: 359 ATDVASRGLDIPAVDLVINYDIPSDSKSYIHRVGRTARAGRAGKSVALVSQYDLELYLRI 418

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQH--NHARKNNPIPQKSTGFDRRKKN 412
           E  + KK+D    +  ++    E++  A        K     +K + FD++++ 
Sbjct: 419 EGALGKKLDSYPLESEAVMLFSERVAEASRAAIQEMKGEDGTKKRSKFDKKRRR 472


>gi|229526303|ref|ZP_04415707.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
 gi|229336461|gb|EEO01479.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
          Length = 452

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 123/394 (31%), Positives = 189/394 (47%), Gaps = 6/394 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR LIL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 65  HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG   ++ TPGR+ DH +   L +  +E LV+DEADRMLD+GF   ++ I +     R+
Sbjct: 125 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D             +   +     + E  +         +      L   +
Sbjct: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRI 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  IIF   + +   L   L +      A+ GN++Q  R  I+  F+    +++
Sbjct: 245 LADAEYRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQTQRNTIMGQFERAVFKIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDIP V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D +    
Sbjct: 305 VTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKR 364

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKIDIA 388
           +E  +++++ +     L G    L P   K   A
Sbjct: 365 VEAFLQQEIQFEVLAGLEGKFKGLKPRQVKPKAA 398


>gi|148974049|ref|ZP_01811582.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
           bacterium SWAT-3]
 gi|145965746|gb|EDK30994.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
           bacterium SWAT-3]
          Length = 443

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 117/386 (30%), Positives = 194/386 (50%), Gaps = 6/386 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + K T IQ K IP+ +   D+   ++TG+GKT +FVLPM+
Sbjct: 1   MHFKDLGLDNRLLKNLKHYDFKKATEIQSKAIPVAMAGKDLLASSKTGSGKTLAFVLPMI 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      R PR +IL PTRELA QV           +   AL++GG  F  Q K L
Sbjct: 61  HKALKTKAFSARDPRGVILAPTRELAKQVYGELRSMLGGLSYEAALILGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +    ++ TPGR+ DH     L ++++E L++DEADRMLD+GF P ++ I +     R+
Sbjct: 121 RKYPRFIVATPGRLADHLEHRSLFLDSVETLILDEADRMLDLGFAPELRRIANAAKHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +              ++   S  + ++         +      +   +
Sbjct: 181 QTLMFSATLDHAEVNDIANEMLDAPKRISVGVSNEQHLDITQKFYLCDHLDHKEAILDRV 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  +IF   + +   L   L ++     A+ GN++Q  R  I+S F+    +++
Sbjct: 241 LEEAEYRQVMIFTATRADTDRLTDKLNEKKLKAVALSGNLNQTQRNAIMSQFERAVYKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RG+DIP+V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D +    
Sbjct: 301 VTTDVASRGIDIPNVSHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWESFKR 360

Query: 360 IEKLIEKKVDW-----LNGDLSSLNP 380
           +E  +++ +++     L G    + P
Sbjct: 361 VELYLQQDLNFSVLEGLKGKFKGIKP 386


>gi|116671594|ref|YP_832527.1| DEAD/DEAH box helicase domain-containing protein [Arthrobacter sp.
           FB24]
 gi|116611703|gb|ABK04427.1| ATP-dependent RNA helicase CsdA [Arthrobacter sp. FB24]
          Length = 747

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 142/374 (37%), Positives = 219/374 (58%), Gaps = 7/374 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLG+  +V+ A+ D GY KP+PIQ  TIPL+L+  DV G+AQTGTGKTA+F +P L+ 
Sbjct: 92  FADLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSR 151

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKK 118
              L       R  + L+L PTRELA QVA+ F  Y K+ +    L + G   +  Q   
Sbjct: 152 LAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAG 211

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RGA V++ TPGR++DH ++G L ++ ++ LV+DEAD ML MGF   ++ I    P  R
Sbjct: 212 LRRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQTPSDR 271

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q  LFSATM  +++++S+ +L NP  I V + ++T       ++     +          
Sbjct: 272 QVALFSATMPSQIRRMSKQYLNNPAEISVKSKTTTGANTRQRYLQVMGPHKLDALTRILE 331

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++  D +   +      +++ +   S   +GF   AI+G+I Q+ R + +   KEG I +
Sbjct: 332 VEEFDGVIAFVRTKMATEDLADKLKS---RGFQAAAINGDIPQQQRERTVDALKEGRIDI 388

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   +   +   + 
Sbjct: 389 LVATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLR 448

Query: 359 AIEKLIEKKVDWLN 372
           +IEK   + V+ ++
Sbjct: 449 SIEKATRQPVEQMH 462


>gi|291615697|ref|YP_003518439.1| RhlB [Pantoea ananatis LMG 20103]
 gi|291150727|gb|ADD75311.1| RhlB [Pantoea ananatis LMG 20103]
 gi|327395962|dbj|BAK13384.1| ATP-dependent RNA helicase RhlB [Pantoea ananatis AJ13355]
          Length = 430

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 140/421 (33%), Positives = 211/421 (50%), Gaps = 11/421 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P VV A+   G+   TPIQ   +P  L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPLVVEALDKKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L         +V  PR LIL PTRELA Q+  + E    +  L + L  GG  ++ Q K
Sbjct: 70  HLLSHPAPEGRQVNQPRALILAPTRELAVQIHADAEPLAASTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+L+ T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLENGVDILVGTTGRLIDYAKQNHVNLGAIQVMVLDEADRMFDLGFIKDIRWLFRRMPAA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F        V       +T        +   +++   L Q
Sbjct: 190 TQRLSMLFSATLSYRVRELAFEHMNSAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G I 
Sbjct: 249 TLVEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDID 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARK--NNPIPQKSTGFDRRKK 411
             IE+ I   +     +    L+ L PP         N  R+  NN   + +     RK+
Sbjct: 369 PGIEEYIGHSIPVSKYNSDALLTELPPPKRLTRNRSGNGQRRGGNNTGRRGAPRHSNRKR 428

Query: 412 N 412
           +
Sbjct: 429 S 429


>gi|75287517|sp|Q5VQL1|RH14_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 14
 gi|55296348|dbj|BAD68264.1| putative p68 RNA helicase [Oryza sativa Japonica Group]
 gi|222617825|gb|EEE53957.1| hypothetical protein OsJ_00557 [Oryza sativa Japonica Group]
 gi|240065031|gb|ACS44654.1| ATP-dependent RNA helicase DB10 [Oryza sativa Japonica Group]
 gi|240065056|gb|ACS44655.1| ATP-dependent RNA helicase DB10 [Oryza sativa Indica Group]
          Length = 708

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 130/366 (35%), Positives = 200/366 (54%), Gaps = 2/366 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G  P+++  V  AG+  PTPIQ ++ P+ L+  D+  +A+TG+GKT  +++P  
Sbjct: 180 MTFQSTGFPPEILREVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGF 239

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +          P  L+L PTRELA Q+ D  +K+G++  ++   L GG P   Q + L
Sbjct: 240 ILLKRLQHNSRDGPTVLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDL 299

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGAD+++ TPGR+ D     ++ ++ +  LV+DEADRMLDMGF P I+ I   V   RQ
Sbjct: 300 ERGADIVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQ 359

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+F+AT   E++K++ + L NP ++ +                      +K   L Q +
Sbjct: 360 TLMFTATWPKEVRKIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQ-I 418

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + II     K + +       + +   AIHG+  Q  R  +LS F+ G   ++
Sbjct: 419 LRSQEPGSKIIIFCSTKRMCDQLARNLARQYGASAIHGDKSQAERDSVLSEFRSGRCPIL 478

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G A+T    +D K+   
Sbjct: 479 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASD 538

Query: 360 IEKLIE 365
           + K++E
Sbjct: 539 LVKILE 544


>gi|289614196|emb|CBI58963.1| unnamed protein product [Sordaria macrospora]
          Length = 584

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 113/377 (29%), Positives = 183/377 (48%), Gaps = 7/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +D+ D      ++  + +AG+ KP+PIQ + IP+ L   D+   A+ GTGKTA+F++P L
Sbjct: 45  LDWEDFIHDRDLLMGIFEAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFLIPAL 104

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +V   + LIL PTRELA Q +   +  GK+  + V +  GG        +L+
Sbjct: 105 EKI---NPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIVRLQ 161

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +    ++   + ++DEAD++L   F P I+ +    P  RQ 
Sbjct: 162 DPVHIVVGTPGRILDLAGKQVADLSECPMFIMDEADKLLSQEFTPVIEQLLQFHPKDRQV 221

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F                 T+            K+       L 
Sbjct: 222 MLFSATFPLSVKD----FSDKNMTSPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 277

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q++R ++  +F+ G  + +V
Sbjct: 278 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMAQQARNRVFHDFRNGVCRNLV 337

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 338 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNI 397

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +   +  
Sbjct: 398 ERDLGTEIQPIPQIIDK 414


>gi|84499824|ref|ZP_00998112.1| DEAD/DEAH box helicase [Oceanicola batsensis HTCC2597]
 gi|84392968|gb|EAQ05179.1| DEAD/DEAH box helicase [Oceanicola batsensis HTCC2597]
          Length = 451

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 146/371 (39%), Positives = 219/371 (59%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           MDF  LGL P +   + + G  +PTPIQ K IP  ++  D+ G+AQTGTGKTA+F LP+ 
Sbjct: 1   MDFNSLGLLPCITENLAELGLTRPTPIQTKAIPHAMEGRDILGLAQTGTGKTAAFGLPLL 60

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                E+G+   +  R L+L PTRELA Q+ +N + Y K  ++ V L++GG    AQ  +
Sbjct: 61  TAIAREQGKPEPKTVRGLVLAPTRELAKQIVENLQAYAKGTHMRVGLVVGGASINAQVNR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG DVL+ TPGR++D  +R  + ++    LV+DEAD+MLD+GFI  ++ I +L+P TR
Sbjct: 121 LARGTDVLVATPGRLIDLLDRRAVTLSQTRFLVLDEADQMLDLGFIHALRRIATLLPQTR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATM   + +++ ++L +P R+E   P   A+ IE                    
Sbjct: 181 QTMLFSATMPKLMAEIAGSYLTDPVRVETAPPGKPADKIEQSVHFIAQGEKTAL---LIE 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     I+F   K     L  +L   G++  A+HGN  Q  R + +  F+EG   +
Sbjct: 238 HLDAHRADPAIVFARTKHGSERLMKNLLAAGYAAVAVHGNKSQGQRDRAIREFREGEAMV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DIP + +V+N+D+PN A+NY+HRIGRT RAGR G A    A  ++  + 
Sbjct: 298 LVATDVAARGIDIPGIRYVYNYDLPNVADNYVHRIGRTARAGRDGTAIAYCAPAEMGELR 357

Query: 359 AIEKLIEKKVD 369
            I+KL+ K++ 
Sbjct: 358 DIQKLLGKELP 368


>gi|111023001|ref|YP_705973.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
 gi|110822531|gb|ABG97815.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
          Length = 586

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 147/372 (39%), Positives = 219/372 (58%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL +  +V+ A+ D GY  P+PIQ  TIP +L  +DV G+AQTGTGKTA+F +P+L+
Sbjct: 12  TFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPILS 71

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++  +     P+ L+L PTRELA QVA+ F KY  +      L I  G  +  Q   L 
Sbjct: 72  KIDLTQKS---PQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGLR 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  +G L ++ +  LV+DEAD ML MGF   ++ I +  P  +Q 
Sbjct: 129 RGAHVVVGTPGRVIDHLEKGTLDLSKLSYLVLDEADEMLKMGFQEDVERILADTPEYKQV 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++K+S+ ++ +P  I + + +STA  I   +V    Q           ++
Sbjct: 189 ALFSATMPGAIRKISKQYMHDPVEITMKSKTSTASNISQRYVQVAHQRKLDALTRVLEVE 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + M   IIF   K+   +L   L  +GFS  AI+G+I Q  R + +   K G + ++V
Sbjct: 249 DFEAM---IIFVRTKQATEDLAEKLRSRGFSASAINGDIVQAQRERTIGQLKSGALDILV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G+A   VA  +   + AI
Sbjct: 306 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERHLLKAI 365

Query: 361 EKLIEKKVDWLN 372
           EK   + +  + 
Sbjct: 366 EKATRQPLAEMQ 377


>gi|332142673|ref|YP_004428411.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552695|gb|AEA99413.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 480

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 150/367 (40%), Positives = 218/367 (59%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ A+   G+  P+PIQ K IP VL+  DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLEGKDVLAAAQTGTGKTAGFGLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G        R LIL PTRELAAQV ++   + +   L  A++ GG+    Q  KL
Sbjct: 61  QRLMSGPKVSANNVRALILTPTRELAAQVEESICAFSEFLPLKTAVVFGGVGINPQMIKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DVLI TPGR+LD + +  +  + +E+LV+DEADRMLDMGFI  I+ +  L+P  RQ
Sbjct: 121 RKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIKRVLKLLPEDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT +DE+  +++   +NP  I     ++T + +E   V           +     
Sbjct: 181 SLLFSATFSDEITTLAKTITRNPVSISTAPANTTVDAVEQHLVTIDKSKKTTALICL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   +  ++F   K     +   L +      AIHGN  Q +R K L++FK G I+++
Sbjct: 238 IKQQKWEQVLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALADFKNGDIKVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI ++  V N D+PN A +Y+HRIGRTGRAG  G+A++ V+ E+++++  
Sbjct: 298 VATDIAARGIDISELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVSAEELQNLKD 357

Query: 360 IEKLIEK 366
           IE LI+K
Sbjct: 358 IETLIQK 364


>gi|262403377|ref|ZP_06079937.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC586]
 gi|262350876|gb|EEZ00010.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC586]
          Length = 464

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 168/392 (42%), Positives = 244/392 (62%), Gaps = 10/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R    R LIL PTRELAAQ+ DN   YG++  L+ A++ GG+    Q +++
Sbjct: 61  ELLAKGPKVRANKVRALILTPTRELAAQIQDNVLIYGRHLPLSSAVVFGGVKVNPQMQRM 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GAD+L+ TPGR++D +N+  +  + +EILV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT + E++++++  + NP  I V+  +STA T+E C         KK   +   L
Sbjct: 181 NLLFSATFSAEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADV---KKKPAMLVKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L   L +QG +  AIHGN  Q +R + L++FK G ++++
Sbjct: 238 AKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP +  V NF++P  AE+Y+HRIGRTGRAG  GKA +LV+  +   + A
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357

Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDI 387
           IE+L +  +  +N  L+   P    P  K+D 
Sbjct: 358 IERLTQALLPRVN--LAGFEPTNQLPESKLDT 387


>gi|51245265|ref|YP_065149.1| ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54]
 gi|50876302|emb|CAG36142.1| related to ATP-dependent RNA helicase [Desulfotalea psychrophila
           LSv54]
          Length = 424

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 153/422 (36%), Positives = 246/422 (58%), Gaps = 6/422 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL  +++  V + GY  P+ IQ + IP+VL + DV  +A TGTGKTA F LPM+
Sbjct: 1   MSFAILGLCDELLQTVAEQGYTTPSQIQTEAIPVVLNQRDVMAVAHTGTGKTAGFTLPMV 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L  G   +    R L++ PTRELAAQVA++ + YG   N+      GG+  E Q  KL
Sbjct: 61  QLLSGGDSPQPCTVRALVITPTRELAAQVAESVQTYGSMMNIRTGAAFGGVRIEPQIAKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G DVL+ TPGR+LD +N+  +  + ++ILV+DEADRMLD+GFI  I++I +L+P  RQ
Sbjct: 121 QAGLDVLVATPGRLLDLYNQQAVSFDALKILVLDEADRMLDLGFIDDIRHIQTLLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT ++E++ ++   L +P  IEV+T  +  ++I+        +      +     
Sbjct: 181 TLMFSATFSEEIKSLAGGMLHDPVLIEVDTDKNIVDSIKQKMHPVDQERKSALLIHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K+    L   L++ G +  +IH N  Q +R + L  FK G++ ++
Sbjct: 238 IKKYNWQQLLVFSRTKRGADTLVTQLKEAGINAESIHANRTQYARTRALDGFKNGSVVVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RG+D+  +  V NFD+P  AE+Y+HRIGRTGRAG  G A +  ++++ + + +
Sbjct: 298 VATDIASRGIDVHQLPCVINFDLPYVAEDYVHRIGRTGRAGTSGLAVSFFSEDEAQQLAS 357

Query: 360 IEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IEKLI +K +   + G   S  P +   D  +     + +P  +K     +  K   +++
Sbjct: 358 IEKLIGRKFERDIVQGFAPSKKPAVVLSDEDEEYGNFEPDPPRRKGKSKGQAGKPAKTKR 417

Query: 418 SH 419
            H
Sbjct: 418 KH 419


>gi|304382917|ref|ZP_07365399.1| ATP-dependent RNA helicase DeaD [Prevotella marshii DSM 16973]
 gi|304335942|gb|EFM02190.1| ATP-dependent RNA helicase DeaD [Prevotella marshii DSM 16973]
          Length = 420

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 137/414 (33%), Positives = 214/414 (51%), Gaps = 15/414 (3%)

Query: 17  LDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTL 76
            D  +   TPIQ K IP +L  HD+ G+AQTGTGKTA+++LP+L+ L  G         +
Sbjct: 17  YDMHFDTCTPIQEKCIPEILNGHDIMGVAQTGTGKTAAYLLPILSRLADGGFPDETINCV 76

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP----FEAQNKKLERGADVLICTPGR 132
           I+ PTRELA Q+    + +G       ++ + G      ++ + K L  GADV+I TPGR
Sbjct: 77  IMSPTRELAQQIDQAMQGFGYYLQDVSSVAVYGGNDGNRYDQEVKSLRLGADVVIATPGR 136

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           ++ H + GK+  + +   V+DEADRMLDMGF   I  I   +P T Q ++FSATM  +++
Sbjct: 137 LISHLSLGKVDFSRVSFFVLDEADRMLDMGFSDDILTIFKQLPKTCQIIMFSATMPSKIE 196

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           +          +  V    + ++  E      Y  Y  +   + + +     +   IIF 
Sbjct: 197 E----LAATMLKNPVEVKIAVSKPAEKIKQTAYVCYEPQKLGIIKHIFKAGNLTRTIIFS 252

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
            +K  V ++  +L++       +H ++ Q  R +I+  FK G I ++VA+D+ ARG+DI 
Sbjct: 253 GKKNKVKDINRALQRLHIKSGEMHSDLTQAERDEIMYRFKSGAIDVLVATDIVARGIDID 312

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
           D+  V N+DVP  AE+Y+HRIGRT RA R G A T V+  DI +  +IEK +EK+V+ L 
Sbjct: 313 DIYTVINYDVPRDAEDYVHRIGRTARAERDGNAITFVSDADISYFQSIEKFLEKEVEKLP 372

Query: 373 GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESE 426
                   P    +   +   +K+    +KST      K    +      K+ E
Sbjct: 373 L-------PAALGEAPAYKVVKKSRKTGRKSTAHKPASKGGRGRGRRNSGKKKE 419


>gi|229592757|ref|YP_002874876.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
 gi|229364623|emb|CAY52530.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 444

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 153/379 (40%), Positives = 219/379 (57%), Gaps = 6/379 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F +P+L
Sbjct: 1   MTFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L     +V     R LIL PTRELA QV  +  +Y ++  LT   + GG+    Q  K
Sbjct: 61  QLLTTEGPKVAANSARALILCPTRELAEQVHASVAEYAQHLPLTTYAVYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR++D F +  L +N ++ LV+DEADRMLD+GF   + NI  ++P  R
Sbjct: 121 LRKGVDILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A T+            K+   L   
Sbjct: 181 QTLLFSATFSDEIRLLAGQMLNDPLTIEVSPRNVAANTV---KQWVVPVDKKRKPELFVH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +   K  ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +Q+
Sbjct: 238 LMRKGRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSSEVQI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V NFD+P  AE+YIHRIGRTGRAG  G+A +LV  +++  + 
Sbjct: 298 LVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLS 357

Query: 359 AIEKLIEKKVDW-LNGDLS 376
           AIE L  + +   +  D  
Sbjct: 358 AIEMLTRQTLTRKMEPDFE 376


>gi|124022674|ref|YP_001016981.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9303]
 gi|123962960|gb|ABM77716.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9303]
          Length = 636

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 131/372 (35%), Positives = 212/372 (56%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F   G S  ++  + + GY +P+PIQ   IP ++   D+ G AQTGTGKTA+F LP++ 
Sbjct: 84  EFDCFGFSEPLLKTLAEKGYKQPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLIE 143

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+   +R   P+ L+L PTRELA QVAD+F  Y   +     L +  G  F +Q   L+
Sbjct: 144 RLQDHGSR---PQVLVLAPTRELAMQVADSFRAYAVGHPHLKVLAVYGGADFRSQINTLK 200

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR++DH  +G L  + +  LV+DEAD ML MGFI  ++ I   +P  RQ 
Sbjct: 201 RGVDVVVGTPGRLMDHMRQGTLDTSGLRCLVLDEADEMLRMGFIDDVEWILEQLPKERQM 260

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  E++++S+ +L  P  I + +    A  I    +     +        + + 
Sbjct: 261 VLFSATMPSEIRRLSKRYLHEPAEITIKSRDQEARLIRQRCITLQNSHK---LEALRRVL 317

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T +  IIF   K   + +  +LE  G  V  ++G++ Q  R + +   ++G++ ++V
Sbjct: 318 EAFTGEGVIIFARTKVITLTVAEALESAGHDVAVLNGDVPQNQRERTVERLRKGSVNILV 377

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E Y+HRIGRTGRAGR G+A   V   + + +   
Sbjct: 378 ATDVAARGLDVDRISLVINYDIPFDSEAYVHRIGRTGRAGRSGEAILFVNPRERRFVGGF 437

Query: 361 EKLIEKKVDWLN 372
           E+ + + ++ ++
Sbjct: 438 ERAVGQPIEPMD 449


>gi|157828874|ref|YP_001495116.1| ATP-dependent RNA helicase RhlE [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157801355|gb|ABV76608.1| ATP-dependent RNA helicase RhlE [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 410

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 142/422 (33%), Positives = 225/422 (53%), Gaps = 15/422 (3%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
            +  LS +++ A+      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP++   
Sbjct: 2   KNFNLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLIDSF 61

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            K +         IL PTRELA Q+     K   +Y +  A+LIGG P   Q  +L++  
Sbjct: 62  IKNKTTAL-----ILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQLKKNP 116

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG    ++ I   +P  RQ L+F
Sbjct: 117 KVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMF 176

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM   +  VS+ +L NP RI V   +  A  I+          S K        Q   
Sbjct: 177 SATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQ----ESMHVSDKEKFSALTKQLGH 232

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
              + IIF   K++   L   L+ +  +  AIHG++ QR R +++ +F++   ++MVA+D
Sbjct: 233 REGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVATD 292

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +D+    AI++L
Sbjct: 293 VAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIRWRAIDRL 352

Query: 364 IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLK 423
           + K      G+ +  +      +  + +  ++     +K   FD  +K      S+   +
Sbjct: 353 VNK------GESTPRSEFRSDKNNRKRSFGKRAGGDGKKFNAFDSSRKRTFDGNSYGNKR 406

Query: 424 ES 425
           + 
Sbjct: 407 KK 408


>gi|227824325|ref|ZP_03989157.1| DEAD-box ATP-dependent RNA helicase ydbR [Acidaminococcus sp. D21]
 gi|226904824|gb|EEH90742.1| DEAD-box ATP-dependent RNA helicase ydbR [Acidaminococcus sp. D21]
          Length = 444

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 141/430 (32%), Positives = 227/430 (52%), Gaps = 21/430 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA   ++P +V  +   G   PTP+Q + IP +LQ  DV   AQTG GKT SFV+P+ T
Sbjct: 34  SFAQFAIAPSLVERLHQTGKDIPTPVQERAIPALLQGRDVICRAQTGVGKTLSFVVPLFT 93

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + + +  V+    LIL PTRELA Q A   +K      + V  + GG  ++ + +KL  
Sbjct: 94  KITEVKTFVQA---LILSPTRELAQQTAGEIKKLADGTPVRVLAVSGGKDYDEERRKLGN 150

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            A+VL+ TPGR+LDH  +G   +  I  LV+DE D ML  GF   I+ + SL+P   QT+
Sbjct: 151 KANVLVGTPGRLLDHLRKGNTSLGGITYLVLDEVDEMLRQGFGEDIETLLSLMPQPHQTM 210

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+ +E++K+ +   +NP+ I+++   +TA TI    +     + ++     Q +  
Sbjct: 211 MCSATLDEEVRKLGKMITKNPRLIDIDPKEATASTIHQVCIKVSEDHKEEA---LQTIID 267

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      ++FC  K+  + +   L  +GF+   +HG++ Q+ R + +  F++   Q++VA
Sbjct: 268 RCNPFLMLVFCKSKERAIEVYDWLYGKGFNADVLHGDMSQQKRRQAMERFRKAKTQILVA 327

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLD+  V  V NFD+P+  + Y+HRIGRTGRAG  G+A T    ++ + +  +E
Sbjct: 328 SDIAARGLDVEGVTQVVNFDIPHDPDWYVHRIGRTGRAGNEGEAITFYTADETRWLTHLE 387

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY-SSQKSHI 420
                           L   LE+ ++A     R   P+  K     +R K+   S K   
Sbjct: 388 --------------DKLGITLERQNLAGEKVRRTVKPVRPKKKRLPKRGKSAVGSNKRGT 433

Query: 421 PLKESEKISK 430
              E+ +  K
Sbjct: 434 KYAEASRKQK 443


>gi|74149390|dbj|BAE22450.1| unnamed protein product [Mus musculus]
          Length = 615

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 134/441 (30%), Positives = 222/441 (50%), Gaps = 6/441 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 154 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 213

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DE DRMLDMGF P I+ I   +   R
Sbjct: 214 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEGDRMLDMGFEPQIRKIVDQIRPDR 273

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453

Query: 358 DAIEKLIEKKVDWLNGD-LSSLNPPLEKIDIAQHNHA--RKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N   L S+          +      R++     K  GF+  +   +
Sbjct: 454 SDLISVLREANQAINPKLLQSVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 513

Query: 415 SQKSHIPLKESEKISKLQQDI 435
             + +  L + +  +K Q  +
Sbjct: 514 YDRGYSNLLKRDFGAKTQNGV 534


>gi|315127484|ref|YP_004069487.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315015998|gb|ADT69336.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 415

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 165/416 (39%), Positives = 239/416 (57%), Gaps = 11/416 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L P ++ A+    Y  PT IQ KTIP +L   DV G AQTGTGKTA+FVLP+L 
Sbjct: 5   SFSSLALDPLLLTAIEQNNYTTPTAIQHKTIPPILAGKDVMGSAQTGTGKTAAFVLPLLH 64

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L     +         IL PTRELA QV  +FEKY +  ++  AL  GG     Q K L
Sbjct: 65  KLLNTTKKDEPGIARVVILTPTRELAQQVFASFEKYAQGTDIKGALAYGGASIGPQIKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    + + TPGR+LDH  +G +++++++ LV DEADRMLDMGFI  I+ I   +P  RQ
Sbjct: 125 KTAQVI-VATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIRRILRHIPGDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  D + ++S+  L++P+ IEV+  +S A  +E    A      ++       +
Sbjct: 184 TLLFSATFDDSVFELSKKLLKDPELIEVDKRNSAAVEVEQVIYAVDEDRKRELVSH---M 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  +IF   K+    L   + K G    +IHG+  Q +R + L NFKEG+ +++
Sbjct: 241 IGMKNWRQVLIFTRTKQMADKLAKEMCKDGLKTESIHGDKSQGARDRALHNFKEGSTRVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + +V NF++P  AE+Y+HRIGRTGRAG  G A +LV+ ++   ++ 
Sbjct: 301 VATDVAARGLDIPALKYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSLDEQWLLEE 360

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ--KSTGFDRRKK 411
           IE L++ ++   WL G    LN P  K +    N ARK+    +       +RR+K
Sbjct: 361 IEVLLDTRLAPQWLEGYEPDLNKPP-KDNRKNTNKARKDRDKKRITGQRAPNRRRK 415


>gi|255071997|ref|XP_002499673.1| hypothetical protein MICPUN_106753 [Micromonas sp. RCC299]
 gi|226514935|gb|ACO60931.1| hypothetical protein MICPUN_106753 [Micromonas sp. RCC299]
          Length = 413

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 194/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  TFDSMNLHENLLRGIYAYGFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCAGVLQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+         + L+L PTRELA Q+       G   N+     +GG       + L+ 
Sbjct: 101 QLDY---EKEECQALVLAPTRELAQQIEKVMRALGDYLNVKCHACVGGTSVREDQRILQS 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I+I  +DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVYDMLRRRALKPDYIKIFSLDEADEMLSRGFKDQIYDIFQLLPSKLQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMTKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  + F+V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFANTRRKVDWLTDKMRARDFTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V K+D + +  ++
Sbjct: 336 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERLLQDVQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           +  +  ++ L  +++ L
Sbjct: 396 RFYQTVIEELPSNVADL 412


>gi|18859541|ref|NP_571132.1| probable ATP-dependent RNA helicase DDX4 [Danio rerio]
 gi|2463519|dbj|BAA22535.1| vas [Danio rerio]
          Length = 716

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 143/431 (33%), Positives = 225/431 (52%), Gaps = 31/431 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 277 MTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 336

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                        + ++ P  +I+ PTREL  Q+     K+     +   ++ GGI    
Sbjct: 337 QRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGY 396

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
             +++ +G +VL  TPGR+ D   RGK+ ++ +  LV+DEADRMLDMGF P ++      
Sbjct: 397 TIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEPEMRKLVASP 456

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++Q+++ +FL+             A +     V    QYSK
Sbjct: 457 GMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTVVQVDQYSK 516

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  LL+ L  + +  +  ++F   K++   +   L ++  S  +IHG+ +QR R K LS+
Sbjct: 517 RDQLLELLRATGN--ERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSD 574

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI  V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 575 FRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFFN 634

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            E D     ++       V  L+G    +   LE++  + H            +TGF+ R
Sbjct: 635 PESDTPLARSL-------VKVLSGAQQVVPKWLEEVAFSAH-----------GTTGFNPR 676

Query: 410 KKNYSSQKSHI 420
            K ++S  S  
Sbjct: 677 GKVFASTDSRK 687


>gi|313609131|gb|EFR84825.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL F2-208]
          Length = 470

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 128/419 (30%), Positives = 208/419 (49%), Gaps = 21/419 (5%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +L LS ++  A+ + GY + TP+Q   IP+ L   D+   +QTG+GKTA+F +P+   +E
Sbjct: 3   NLKLSEEIKRAINELGYTEATPVQKAVIPVALIGEDIVAKSQTGSGKTAAFAIPIAEQVE 62

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
               +   P+ LI+ PTRELA QV       G+   +  A + G  PF  Q  +L +   
Sbjct: 63  WEENK---PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNH 119

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGR+LDH  +G L ++ +  LV+DE D ML MGFI  +++I S +P  RQ L FS
Sbjct: 120 IVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFS 179

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           ATM +E            KR + +       + +   +      +       + +   + 
Sbjct: 180 ATMPEE-------MQDLIKRYQDDPMVIEMASEKTNPIFHVEMQTDNKEKTLKDVLITEN 232

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             + IIFCN K  V  L   L+ +      IHG + Q  R + + +FK G  + ++A+D+
Sbjct: 233 PDSAIIFCNTKNQVDELTDLLDVK---ASKIHGGLRQEDRFRAMDDFKSGKSRFLIATDV 289

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           A RG+D+ +V  V N+D+P   ENY+HRIGRTGRAG+ GKA + V   +   +  IE+++
Sbjct: 290 AGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEML 349

Query: 365 EKKVD--------WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
              ++         +  +  +     +K    +     K N    K      +KK   +
Sbjct: 350 NVTIEKKRKPTVIEVKANEDAFRKKQQKRPTIKKARGEKLNKNIMKLYFNGGKKKKIRA 408


>gi|307215190|gb|EFN89962.1| Probable ATP-dependent RNA helicase DDX17 [Harpegnathos saltator]
          Length = 540

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 128/380 (33%), Positives = 205/380 (53%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F + G    V+  +   G+ +PT IQ +  P+ L   D+ GIA TG+GKT S++LP + 
Sbjct: 83  NFGEAGFPEYVLKEITKQGFNEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPAIV 142

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       R   P  L+L PTRELA Q+    + +G +  +    L GG P  AQ + L
Sbjct: 143 HINSQPKLSRKDGPIALVLAPTRELAQQIQQVADDFGHSSGIRNTCLYGGAPKGAQARDL 202

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G +++I TPGR+LD    GK  +     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 203 DSGVEIVIATPGRLLDFLESGKTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 262

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQL 238
           TL++SAT   E++ ++E+FL++  +I V +    A       +     Y K+        
Sbjct: 263 TLMWSATWPKEVKNLAEDFLKDYAQINVGSLQLAANHNILQIIDVCQDYEKENKLSTLLK 322

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               ++    I+F   K+ V  +   +++ G+    IHG+  Q+ R  +L +F+ G   +
Sbjct: 323 EIMAESENKTIVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWVLQDFRSGKAPI 382

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ DV  V NFD P+ +E+Y+HRIGRTGR  + G A+T     +    +
Sbjct: 383 LVATDVAARGLDVEDVKFVINFDYPSCSEDYVHRIGRTGRRQKTGTAYTFFTPNNSNKAN 442

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + +++++    +N  L  L
Sbjct: 443 DLIQVLKEANQVINPKLLEL 462


>gi|307190551|gb|EFN74538.1| ATP-dependent RNA helicase DDX42 [Camponotus floridanus]
          Length = 769

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 150/454 (33%), Positives = 239/454 (52%), Gaps = 4/454 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F   G    ++  +    Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 255 SFGHFGFDDALMKTIRKNEYTQPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFIWPMLV 314

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + ++       P  LIL PTREL+ Q+    +K+GK YN+ V    GG     Q+K L
Sbjct: 315 HIMDQRELKAGDGPIGLILAPTRELSQQIYQEAKKFGKVYNIQVCCCYGGGSKWEQSKAL 374

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA++++ TPGR++D        +  +  LV+DEADRM DMGF P +++I + V   RQ
Sbjct: 375 ESGAEIVVATPGRMIDLVKMKATNLTRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQ 434

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P RI           +    +  +   S K   L Q L
Sbjct: 435 TLLFSATFKKKVEKLARDVLTDPIRIVQGDVGEANTDVTQHVIMFHNNPSGKWNWLLQNL 494

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               +  + +IF  +K N   L ++L+ + F V  +HG++DQ  R K+++ FK+  +  +
Sbjct: 495 VEFLSAGSLLIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQIERNKVITAFKKKDVSTL 554

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TLV ++D +    
Sbjct: 555 VATDVAARGLDIPHIKTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDKEFAGH 614

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKSTGFDRRKKNYSSQKS 418
           + + +E     ++  L  L         ++    + K+  I     GF  R ++ SS  S
Sbjct: 615 LVRNLEGANQEVSKSLMDLAMQSAWFRKSRFKGGKGKSLNIGGAGLGFRGRPESSSSGGS 674

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPAF 452
               + S+ IS++ + ++ +   S        AF
Sbjct: 675 SS-TQASKDISEVVKKLERHGPGSDRLSAMKAAF 707


>gi|146413022|ref|XP_001482482.1| hypothetical protein PGUG_05502 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 475

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 135/423 (31%), Positives = 221/423 (52%), Gaps = 13/423 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L L P+++ A+    Y KPTPIQ   IP  L+  D+ G+AQTG+GKTA+F +P+L 
Sbjct: 65  TFLELNLVPELMEAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQ 124

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L + +        L+L PTRELA Q+ + F+  G    +    ++GG+    Q + L R
Sbjct: 125 SLWEAQRPYY---ALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQARDLMR 181

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +L+ TPGRI+DH  N     + +++ LV+DEADR+LDM F P +  I  ++P  R T
Sbjct: 182 KPHILVATPGRIMDHLENTKGFSLKSLQYLVMDEADRLLDMDFGPALDKILKVIPTKRTT 241

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT+++ K+    L  P ++ V+    TA+ +    +     Y     +      
Sbjct: 242 YLFSATMTNKIAKLQRASLHEPVKVAVSNKYQTADNLVQSMMLVSDGYKNTFLIHLL--- 298

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   K+ I+F     +           GFS   +HG + Q  R+  L+ FK G   +++
Sbjct: 299 NEFMGKSIIVFTRTCAHTQRSTLLARILGFSAVPLHGQLTQSQRLGSLNKFKSGKANILI 358

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V N+D+P  ++ YIHR+GRT RAG+ GK+ +LV + D++    I
Sbjct: 359 ATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLEMYLRI 418

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E ++  K+          +PP + ++    +  R +    +++  F  ++          
Sbjct: 419 ESVLGFKLP------KDPSPPRDVLNALHVHVDRASAEAIKQTKDFHEKRTKKKRDDRDR 472

Query: 421 PLK 423
             +
Sbjct: 473 EER 475


>gi|58038681|ref|YP_190645.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58001095|gb|AAW59989.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 431

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 148/372 (39%), Positives = 219/372 (58%), Gaps = 5/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L L+  +  A+ + GY  PTPIQ   IP +L+  D+ G+AQTGTGKTA+F LP+L 
Sbjct: 3   SFAELKLAEPIQKALAEEGYTTPTPIQAGAIPYLLEGRDLLGLAQTGTGKTAAFALPILN 62

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R           +L PTRELA+Q+ ++F  Y ++   + A++ GG+    Q +  
Sbjct: 63  HIFTNRRPAPPKGVRALVLAPTRELASQIGESFAAYARHMKFSYAVVFGGVGQGRQIETT 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DVL+  PGR+LD   +  + ++ +EILV+DEADRMLDMGF+  IQ I +L+P  RQ
Sbjct: 123 RRGVDVLVAAPGRLLDLIGQKHIDLSTLEILVLDEADRMLDMGFVRDIQRIMALLPKQRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   +  ++ + L+NP  ++V   SST + I    +   +   K  AL+    
Sbjct: 183 TLLFSATMPPSISDLAHSLLKNPATVQVTPESSTVDRINQAVMFVDSGSKKDAALMLL-- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               ++   ++F   K     +   L K G    AIHGN  Q +R + ++ F+ G I+ +
Sbjct: 241 -ESPSVARAVVFTLMKHEANKVAEFLNKNGIRAEAIHGNKSQGARERAMAGFRSGAIKAL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V HVFN+D+PN  E+Y+HRIGRT RAGR G A +L   E    +  
Sbjct: 300 VATDIAARGIDVDEVSHVFNYDLPNVPESYVHRIGRTARAGREGCAVSLCDAEQRAWLKD 359

Query: 360 IEKLIEKKVDWL 371
           IEK I K +  +
Sbjct: 360 IEKKIGKPIPVV 371


>gi|330808146|ref|YP_004352608.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376254|gb|AEA67604.1| putative ATP-dependent RNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 448

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 196/368 (53%), Gaps = 1/368 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L          +TLIL PTRELA Q     E++ +   +   L+ GG  F+ Q   L + 
Sbjct: 62  LIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI TPGR+++  N G L +  +E+LV+DEADRMLDMGF   +Q +       +QT+L
Sbjct: 122 PDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECTNRQQTML 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT T                  +   + +            A +++    +   L + 
Sbjct: 182 FSAT-TGGSGLREMIAKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQHKEQIVNWLLAN 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T +  I+F N +     +   L  Q +    +HG  DQ+ R   +   K+G ++++VA+
Sbjct: 241 ETYEKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + +IE+
Sbjct: 301 DVAARGLDVEGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360

Query: 363 LIEKKVDW 370
            +++  + 
Sbjct: 361 YLKQSFER 368


>gi|297828586|ref|XP_002882175.1| hypothetical protein ARALYDRAFT_477362 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328015|gb|EFH58434.1| hypothetical protein ARALYDRAFT_477362 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 625

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 131/379 (34%), Positives = 207/379 (54%), Gaps = 2/379 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G   +++  VL+AG+  PTPIQ ++ P+ +Q  D+  IA+TG+GKT  +++P  
Sbjct: 164 MSFEATGFPSELLREVLNAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGF 223

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L++ R   RM P  L+L PTRELA Q+ +   K+G++  ++   L GG P   Q + L
Sbjct: 224 LHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDL 283

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGAD+++ TPGR+ D     ++ +  I  LV+DEADRMLDMGF P I+ I   +P  RQ
Sbjct: 284 ERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQ 343

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+++AT    ++K++ + L NP ++ +                       +     + +
Sbjct: 344 TLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAP-MEKQRRLEQI 402

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + +I     K + +       + F   AIHG+  Q  R  +L+ F+ G   ++
Sbjct: 403 LRSQEPGSKVIIFCSTKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVL 462

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+  V N+D PN  E+Y+HRIGRTGRAG  G+AFT    +D KH   
Sbjct: 463 VATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASD 522

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E     +   +  +
Sbjct: 523 LIKILEGANQRVPPQIREM 541


>gi|170585414|ref|XP_001897479.1| germline helicase protein 1 [Brugia malayi]
 gi|158595158|gb|EDP33731.1| germline helicase protein 1, putative [Brugia malayi]
          Length = 432

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 116/382 (30%), Positives = 186/382 (48%), Gaps = 10/382 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  L   ++  + + G+ KP+PIQ  +I + L   D+   A+ GTGKT ++ +P  
Sbjct: 37  IEFEDFCLKRPLLMGIFEKGWEKPSPIQEASISIALSGQDILARAKNGTGKTGAYCIP-- 94

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++K     + P++LI+ PTRELA Q ++      K+ NL V +  GG        +L 
Sbjct: 95  -CIDKIDVEKKYPQSLIIVPTRELAFQTSNICVDLSKHLNLKVMVTTGGTELRNDIMRLN 153

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++    M++   LV+DEAD++L   F   +  +   +P  RQ 
Sbjct: 154 GTVHIIVATPGRILDLMDKNVADMSHCTTLVLDEADKLLSQDFQGILDRVIKFLPPDRQI 213

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L+SAT    +      F+Q   R           T+            K+       L 
Sbjct: 214 MLYSATFPLTVAT----FMQKHMRNPYEINLMEELTLVGVTQYYAYVQEKQKVHCLNTLF 269

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F++G  + +V
Sbjct: 270 RKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSRMAQGHRNRVFHDFRKGACRNLV 329

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  I
Sbjct: 330 CSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGIAINLITYEDRFTLRRI 389

Query: 361 EKLIEKKVDWLNGDLSSLNPPL 382
           E  +  ++  +     S++P L
Sbjct: 390 EAELRTRIAPIP---KSVDPKL 408


>gi|229103076|ref|ZP_04233764.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-28]
 gi|228680360|gb|EEL34549.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-28]
          Length = 450

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 139/386 (36%), Positives = 223/386 (57%), Gaps = 11/386 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDTESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKID 386
           EK +   +     +     P ++++D
Sbjct: 360 EKTLGAPIQREIIE----QPKIKRVD 381


>gi|47097038|ref|ZP_00234610.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254828606|ref|ZP_05233293.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N3-165]
 gi|254898593|ref|ZP_05258517.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes J0161]
 gi|254911917|ref|ZP_05261929.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes J2818]
 gi|254936243|ref|ZP_05267940.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes F6900]
 gi|47014573|gb|EAL05534.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601004|gb|EEW14329.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N3-165]
 gi|258608833|gb|EEW21441.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes F6900]
 gi|293589878|gb|EFF98212.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes J2818]
          Length = 470

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 133/473 (28%), Positives = 226/473 (47%), Gaps = 28/473 (5%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +L LS ++  A+ + GY + TP+Q   IP+ L   D+   +QTG+GKTA+F +P+   +E
Sbjct: 3   NLKLSEEIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQVE 62

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
               +   P+ LI+ PTRELA QV       G+   +  A + G  PF  Q  +L +   
Sbjct: 63  WEENK---PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNH 119

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGR+LDH  +G L ++ +  LV+DE D ML MGFI  +++I S +P  RQ L FS
Sbjct: 120 IVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFS 179

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           ATM +             KR + +       + +   +      +       + +   + 
Sbjct: 180 ATMPE-------EMQGLIKRYQDDPMVIEMASEKTNPILHVEIQTDNKEKTLKDVLITEN 232

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             + IIFCN K  V  L             IHG + Q  R + + +FK G  + ++A+D+
Sbjct: 233 PDSAIIFCNTKNQVDELTDL---LDVKASKIHGGLRQEDRFRAMDDFKSGKSRFLIATDV 289

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           A RG+D+ +V  V N+D+P   ENY+HRIGRTGRAG+ GKA + V   +   +  IE+++
Sbjct: 290 AGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEML 349

Query: 365 EKKVD--------WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK---STGFDRRKK-- 411
           +  ++         +  +  +     +K    +     K N    K   + G  ++ +  
Sbjct: 350 DVTIEKKRKPTVIEVKANEDAFRKKQQKRPTIKKARGEKLNKNIMKLYFNGGKKKKIRAV 409

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
           ++    S +    +E I  +   I+++ +      G  PA +      K+  +
Sbjct: 410 DFVGTISKLEGITAEDIGII--TIEDHVSFVEILNGKGPAVLEMMRSRKVKGR 460


>gi|292486656|ref|YP_003529526.1| putative ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
 gi|291552073|emb|CBA19110.1| putative ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
          Length = 430

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 140/422 (33%), Positives = 212/422 (50%), Gaps = 9/422 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P+V+ A+   G+   TPIQ   +P  L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L         +V  PR LIL PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  HLLSHPAPEGRQVNQPRALILAPTRELAVQIHADAEPLAQITGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G DVLI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDVLIGTTGRLIDYAKQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F        V       +T        +   +++   L Q
Sbjct: 190 SQRLNMLFSATLSFRVRELAFENMNNAEYVEVEPDQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL +F +G + 
Sbjct: 249 TLIEEEWPDRTIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG +G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVD--WLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE+ I   +     N D  +  L PP         N  R+     ++S+      +  
Sbjct: 369 TAIEEYIGHSIPVSRYNSDALMGDLPPPKRLTRNRSGNGPRRGGNNNRRSSAPRGPNRKR 428

Query: 414 SS 415
           S 
Sbjct: 429 SG 430


>gi|158333359|ref|YP_001514531.1| DEAD/DEAH box RNA helicase [Acaryochloris marina MBIC11017]
 gi|158303600|gb|ABW25217.1| DEAD/DEAH box RNA helicase [Acaryochloris marina MBIC11017]
          Length = 574

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 138/371 (37%), Positives = 214/371 (57%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL ++P ++ AV + GY  P+PIQ ++IP +L   D+ G AQTGTGKTA+F LP+L+ 
Sbjct: 9   FADLAIAPPLLQAVEEVGYESPSPIQAQSIPPLLAGRDLLGQAQTGTGKTAAFALPLLSQ 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           L+  +     P+ L+L PTRELA QVA+  + Y ++     +A L GG     Q ++L R
Sbjct: 69  LDLSQ---AHPQILVLAPTRELAIQVAEAMQTYARHLPGFHIATLYGGQNISTQLRQLRR 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L + N+  +V+DEAD ML MGFI  ++ I    P  RQ  
Sbjct: 126 GVHVVVGTPGRLIDHLLRGTLKLENLSTVVLDEADEMLRMGFIEDVEKILDETPKGRQVA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +++V++  L +P  I++ + ++T  T+   +                 ++ 
Sbjct: 186 LFSATMPSAIRRVAQRHLNDPVEIKIKSKTATVSTVTQRYWQVRGLSKLDALTRILEVED 245

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + M   ++F   K     L   LE +G+S   + G+I Q  R K +   K G + ++VA
Sbjct: 246 FEAM---LVFVRTKVMAAELAEKLEARGYSSAVLSGDISQPLREKTIERIKAGRLDIIVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E Y+HRIGRTGRAGR G A   V+  + + + +IE
Sbjct: 303 TDVAARGLDVERISHVINYDIPYDTETYVHRIGRTGRAGRQGDAILFVSSREKRMLRSIE 362

Query: 362 KLIEKKVDWLN 372
           +   + +  + 
Sbjct: 363 QATRQPIQPMQ 373


>gi|332992020|gb|AEF02075.1| ATP-dependent RNA helicase [Alteromonas sp. SN2]
          Length = 414

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 148/368 (40%), Positives = 221/368 (60%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F+ LGL  +++  V + GY  P+PIQ + IP +L + D+  IAQTGTGKTASF LP+ 
Sbjct: 1   MSFSALGLCTELLNTVAEKGYTTPSPIQQEAIPAILSKQDLIAIAQTGTGKTASFSLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K R+     R LI+ PTRELAAQVA N E+Y +N  +    + GG+  E Q   L
Sbjct: 61  QLLADKPRSEPNCVRALIIAPTRELAAQVAQNVEQYSQNLKVRSTAVFGGVRIEPQKYAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+LI TPGR+LD + +G +   ++EILV+DEADRMLD+GFI +I +I  L+P  RQ
Sbjct: 121 AQGVDILIATPGRLLDLYEQGDINFEHLEILVLDEADRMLDLGFIDHIHHIQKLLPEKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT + E++ ++   L  PK IE+       E I         +   +  +     
Sbjct: 181 TLLFSATFSKEIKTLATTMLNTPKTIELARAKDHIEKITQILHPVDKERKNELLIHLIEN 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   ++F   K+    L + LE +G    +IH N  Q++R   L+ F++G+I+++
Sbjct: 241 NDWSQI---LVFTRTKRGADELRNELEAKGIVAESIHANRTQQARTLALNGFRDGSIKVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DLAARG+DI  +  V N D+P  AE+YIHRIGRTGRA   G A +L + ++ K +  
Sbjct: 298 IGTDLAARGIDIQQLPCVINVDLPYVAEDYIHRIGRTGRASSEGLAISLFSDDEAKQLKT 357

Query: 360 IEKLIEKK 367
           IE+L+ ++
Sbjct: 358 IERLLGRQ 365


>gi|320590111|gb|EFX02556.1| dead deah box RNA helicase [Grosmannia clavigera kw1407]
          Length = 1178

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 134/445 (30%), Positives = 211/445 (47%), Gaps = 6/445 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL+  ++  +   GY KPT IQ++ +P+++   DV G+A+TG+GKT +F++PM  
Sbjct: 539 KWSHCGLTRPMLEVIEQLGYDKPTAIQMQALPVIMSGRDVIGVAKTGSGKTMAFLVPMFR 598

Query: 62  ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +      R   P  LIL PTRELA Q+  + + + K   L      GG P + Q  +L+
Sbjct: 599 HIMDQERVRDDGPIGLILTPTRELAVQIHRDCKPFAKKLGLRAVCAYGGPPIKDQIAELK 658

Query: 121 RGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++ T GR++D         + +     +V+DEADRM DMGF P +  I + +   
Sbjct: 659 RGAEIVVATTGRMIDLLAANQGRVVSLRRTTYIVLDEADRMFDMGFEPQVMKIFANIRPD 718

Query: 178 RQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           RQTLLFSATM   +   V +      +           E  +   V        +   L 
Sbjct: 719 RQTLLFSATMPRIIDALVKKVLHSPVEITVGGKSVVAPEITQMVEVRDEKDKFLRLLELL 778

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L   D     +IF  +++    L   L ++G++  ++HG  DQ  R   +S+FK+G  
Sbjct: 779 GELYMDDDDVRALIFVERQEKADELLRELLRKGYACMSLHGGKDQSDRDSTISDFKKGVC 838

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T V +E    
Sbjct: 839 PVLVATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFVTEEQENC 898

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPP-LEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
              I K +E+    +   L  +     EK+   +            +    DR       
Sbjct: 899 APGIAKALEQSGQPVPERLLEMRKAWREKVKTGKAKDQSGFGGKGLEKLDKDREAARLRE 958

Query: 416 QKSHIPLKESEKISKLQQDIQENDA 440
           +K+H    E +   K      E  A
Sbjct: 959 RKTHKAEGEDDDFDKETAAEDEKKA 983


>gi|299066924|emb|CBJ38119.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
           RNA helicase(C-terminal) (rhlE-like) [Ralstonia
           solanacearum CMR15]
          Length = 613

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 144/385 (37%), Positives = 223/385 (57%), Gaps = 23/385 (5%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-- 63
           LGL  ++  A+ +  Y +PTP+Q + IP  L   D+   +QTG+GKTA+F+LP +  +  
Sbjct: 35  LGLDERIARALGELNYTQPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFMLPAIQRISE 94

Query: 64  ------------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVA 104
                              + R     P  L+L PTRELA QV     +YG++   +  A
Sbjct: 95  QPEPQRPRADGPQQRVKGRRPRPEPAKPSLLVLTPTRELALQVTTATAQYGRHLRRIVCA 154

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
            ++GG+P+  Q   L R  D++I TPGR+LDH + G++ ++ +++LV DEADRMLDMGF 
Sbjct: 155 SILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFA 214

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
             I+ I    P +RQ L+FSATM   +++++E  ++ P+RIE+         IE     T
Sbjct: 215 DDIEAIVGATPASRQMLMFSATMDRRIEQLAERMMREPQRIEIAAAKVDQSNIEERLHFT 274

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                K    L   L    T+K  I+F   K++  +L   L + GFS  A+HG++ Q +R
Sbjct: 275 DDLSHK--QQLLDHLLRDATLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQGAR 332

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + L+  + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR G 
Sbjct: 333 NRTLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGI 392

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVD 369
           A  LV   D      IE+ +++++D
Sbjct: 393 AINLVNHGDTFQWRRIERFVDRRID 417


>gi|242045284|ref|XP_002460513.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
 gi|241923890|gb|EER97034.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
          Length = 760

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 148/462 (32%), Positives = 231/462 (50%), Gaps = 30/462 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  +V A    GY KPTPIQ   IPL L   D+CG A TG+GKTA+F LP+L 
Sbjct: 186 SFLELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLE 245

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     RV   R LIL PTRELAAQV    EK  +  ++   L++GG+  + Q   L  
Sbjct: 246 RLLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRS 305

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D+++ TPGRI+DH  N   + + ++ ++++DEADR+L++GF   IQ +  + P  RQT
Sbjct: 306 MPDIVVATPGRIIDHLRNSLSVGLEDLAVVILDEADRLLELGFSAEIQELIRMCPKRRQT 365

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+E+ ++ +  L  P R+E +       T+    V            +   L 
Sbjct: 366 MLFSATMTEEIDELIKLSLNKPVRLEADPSLKRPATLTEEVVRIRRARESNQEAVLLALC 425

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   ++ IIF   K++   L       G     +HGN+ Q  R++ L  FK+  +  ++
Sbjct: 426 LKTFKRSVIIFSGTKQSAHRLKIVFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDFLI 485

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  V  V NF  P   + Y+HR+GRT RAGR G A T V  +D   + AI
Sbjct: 486 ATDVAARGIDIVGVRTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAI 545

Query: 361 EKLIEKKV------DWLNGDLSSLNPPLE-------------------KIDIAQH--NHA 393
            K    ++      +    + + L   LE                   +++IA+   +  
Sbjct: 546 AKKAGSQLKSRIVAEKPVAECAQLIEQLEGQISIIIREERVEREARKAEMEIAKESLDQG 605

Query: 394 RKNNPIPQKSTGFDRR--KKNYSSQKSHIPLKESEKISKLQQ 433
           +  + +       D R  +K     + ++P K+  ++   ++
Sbjct: 606 KSTSGVISAKQAEDLRLKEKKRREHEKNLPRKKRRRLEAQRE 647


>gi|221141602|ref|ZP_03566095.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|302751962|gb|ADL66139.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus str. JKD6008]
          Length = 506

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 136/441 (30%), Positives = 225/441 (51%), Gaps = 14/441 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S   V ++   G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +  ++LIL PTRELA QVA+   ++ +   + V  + GG+P E Q K L++
Sbjct: 63  KVVG----KQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L  + I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     F     +  K           
Sbjct: 179 ILFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFT--NFLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 237 VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 297 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
               +K       +S+L PP  K ++ Q         +    +     +    S +    
Sbjct: 357 DANGRK-------MSALRPPHRK-EVLQAREDDIKEKVENWMSKESESRLKRISTELLNE 408

Query: 422 LKESEKISKLQQDIQENDADS 442
             + + ++ L Q++ E + + 
Sbjct: 409 YNDVDLVAALLQELVEANDEV 429


>gi|71281612|ref|YP_268332.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71147352|gb|AAZ27825.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 455

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 147/449 (32%), Positives = 240/449 (53%), Gaps = 26/449 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M    +GLS  ++ AV   GY   TPIQ + IP++ Q  D+   AQTGTGKTA+F LP+L
Sbjct: 1   MSVDSIGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPIL 60

Query: 61  TILEKGRA-------------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNL 101
             + K                        +  R LIL PTRELA QVADN +++ +   +
Sbjct: 61  DAIAKANHAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPI 120

Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
              ++ GG    +Q K L++G DVL+ TPGR+L+H     + ++ ++ LV+DEADRMLDM
Sbjct: 121 KSGVVYGGGKMASQTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDM 180

Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
           GF+  I+ +   V    QTL+FSAT +D ++ ++   L++PK I V+  ++T+  I+   
Sbjct: 181 GFLTDIEKLLLAVKHKHQTLMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAV 240

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
                +  ++           +  +  ++F   K++   L   L+  G      HG+  Q
Sbjct: 241 YWVTEERKRELLSEL---IGVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQ 297

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
            +R K L  F EG ++++VA+D+AARGLDIPD+  V NF +P   E+Y+HR+GRTGRAG+
Sbjct: 298 GARNKALEQFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGK 357

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            G A +LV+ +D + ++ IE+LIE+K + +       N    +++ +++  A        
Sbjct: 358 SGTAISLVSPKDERFLENIEQLIERKFERIVAPGYEFN----RLEASEYQEATVKRDSKN 413

Query: 402 KSTGFDRRKKNYSSQKSHIPLKESEKISK 430
           +      + +N + +   I      K ++
Sbjct: 414 RYRAAQEKNQNLAKKDVKIKSLSKNKTAR 442


>gi|315304037|ref|ZP_07874464.1| ATP-dependent RNA helicase DbpA [Listeria ivanovii FSL F6-596]
 gi|313627596|gb|EFR96302.1| ATP-dependent RNA helicase DbpA [Listeria ivanovii FSL F6-596]
          Length = 474

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 122/409 (29%), Positives = 198/409 (48%), Gaps = 21/409 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+  +L LS ++  A+ + GY   TP+Q + IP+ L   D+   +QTG+GKTA+F +P+ 
Sbjct: 5   MN--NLKLSEEIKRAINELGYKDATPVQKEVIPVALTGKDIVAKSQTGSGKTAAFAIPIA 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +   P+ LI+ PTREL  QV       G+   +  A + G  PF  Q  +L 
Sbjct: 63  EQVIWEENK---PQALIIVPTRELGVQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELS 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+LDH  +G L ++ +  LV+DE D ML MGFI  +++I   +P  RQ 
Sbjct: 120 QKNHIVVGTPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLSMGFIDQVEDILQFLPKKRQN 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM +             KR + +         +   +      ++      Q + 
Sbjct: 180 LFFSATMPE-------EMHDLIKRYQNDPVVIEMAAEKTNPITHIEMQTENKEKTLQDVL 232

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +   + IIFCN K  V  L         +   IHG + Q  R + + +FK G  + ++
Sbjct: 233 ITENPDSAIIFCNTKNQVDELSDL---LQVNAAKIHGGLRQEERFRAMDDFKSGKSRFLI 289

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A RG+D+ +V  V N+D+P   ENY+HRIGRTGRAG  GKA + V   +   +  I
Sbjct: 290 ATDVAGRGIDVENVTLVINYDLPIEKENYVHRIGRTGRAGNSGKAISFVKTNENPLLRDI 349

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           E ++   +           P + ++  ++    +K    P        +
Sbjct: 350 EAMLNITIQKKR------KPTIIEVKASEEAFRKKQQKRPTIKKARGEK 392


>gi|115683622|ref|XP_784902.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Strongylocentrotus purpuratus]
 gi|115971375|ref|XP_001190564.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Strongylocentrotus purpuratus]
          Length = 869

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 136/449 (30%), Positives = 225/449 (50%), Gaps = 16/449 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   G+S +V+  +    Y KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 413 SWVQCGVSMRVLTILKKNNYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTMAFLLPMFR 472

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P TLI+ PTRELA Q+    +K+ K+  L    + GG     Q  +L
Sbjct: 473 HIMDQDPLEAEDGPITLIMTPTRELAMQIFKECKKFTKSMGLRAVCVYGGTGISEQIAEL 532

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     N     +     LV+DEADRM DMGF P +  I   +  
Sbjct: 533 KRGAEIIVCTPGRMIDMLGANNGRVTNLRRCTYLVLDEADRMFDMGFEPQVMKIVENIRP 592

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT   +++ ++   L  P  ++V   S     +             +  L  
Sbjct: 593 DRQTVLFSATFPRQMEALARKILTKPIEVQVGGRSVVCSDV---TQHAMILEEDQKFLKL 649

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L         ++F  ++++   L   L K  +   A+HG IDQ  R  I+ +FK   +
Sbjct: 650 LELLGYYDEGQILVFVEKQESADLLLKDLMKASYPCLALHGGIDQYDRDSIIQDFKAANV 709

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+ +AARGLD+ ++  V N+D PN  E+Y+HR+GRTGRAG  G ++T +  E  K+
Sbjct: 710 KILVATSVAARGLDVKNLVLVINYDCPNHYEDYVHRVGRTGRAGNKGFSYTFLMPEQAKY 769

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              + K  E     +  +L+ +         ++     KN+    K   FD  ++  +++
Sbjct: 770 AGDVIKAFELSGAKVPEELTEMWSLYCNQQKSEGKEVTKNSGFSGKGFKFDDTERELANE 829

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGF 445
           K        +K+ +    +Q++D +  G 
Sbjct: 830 K--------KKLQRAALGLQDSDDEDAGM 850


>gi|326794221|ref|YP_004312041.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326544985|gb|ADZ90205.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 453

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 145/407 (35%), Positives = 229/407 (56%), Gaps = 6/407 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  GL  +++ A+       PT IQ + IP +LQ HD+   AQTG+GKTA+F LP+L
Sbjct: 28  MTFSKFGLDQEILSALDTLELTAPTSIQEQAIPEILQGHDLIATAQTGSGKTAAFCLPIL 87

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L+ G   +    R LI+ PTRELA Q+  N + + ++  L   ++ GG+    Q K L
Sbjct: 88  QALKDGEKAKPNHVRCLIIAPTRELAIQLNANIKAFNEHLTLRHQVIFGGVRVLPQRKYL 147

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG+D+L+ TPGR+LD   RG +L +++  LV+DEADR+LD+GF   +  I   +P  RQ
Sbjct: 148 KRGSDILVATPGRLLDLHQRGDILFDSLTHLVLDEADRLLDLGFAKELDQIIQALPKQRQ 207

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    ++K+++  L  PK     T    A    +     +    K+   L   L
Sbjct: 208 TLLFSATFAPPIKKLAKKILNQPK---DVTTIQKAAAKPNINQWLHPVDKKRKTELLLEL 264

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      I+F N KKN   +  +L + G S  A+H +  Q  R+ +   FK   I ++
Sbjct: 265 LNRKPHAQVIVFTNTKKNADLVAQALNQDGISAGALHSDRTQDERIHVFDQFKNNEISIL 324

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI ++  V N+D+P  +E+YIHRIGRTGRAG  G+AF++ + ++   +  
Sbjct: 325 VATDVAARGIDIQNLPLVINYDLPKVSEDYIHRIGRTGRAGHAGQAFSIASADEFDALLD 384

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           IE L  KK+   +++G     + PL++   A+   ++K+     +  
Sbjct: 385 IEALTGKKITRKYIDGFHPDHDIPLQRKAKAKPTKSKKDAKKTAEKK 431


>gi|258622174|ref|ZP_05717200.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM573]
 gi|258585498|gb|EEW10221.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM573]
          Length = 452

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 121/386 (31%), Positives = 188/386 (48%), Gaps = 6/386 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLSIAGRDLLASSKTGSGKTLAFVLPML 64

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR +IL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 65  HKSLKNKAFSAKDPRGVILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH +   L ++ +E LV+DEADRMLD+GF   ++ I +     R+
Sbjct: 125 ARDPKFIVATPGRLADHLDHRSLFLDGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D             +   +     + E  +         +      L + +
Sbjct: 185 QTLMFSATLDHADVNDIAMEMLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLERI 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  IIF   + +   L   L +      A+ GN++Q  R  I+S F+    +++
Sbjct: 245 LADAEYRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQAQRNTIMSQFERVVFKIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDIP V HV NFD+P   E Y+HRIGRTGRAG  G A +LV  +D      
Sbjct: 305 VTTDVASRGLDIPTVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAMSLVGPKDWDSFKR 364

Query: 360 IEKLIEKKVDW-----LNGDLSSLNP 380
           +E  +++++ +     L G    L P
Sbjct: 365 VEAFLQQEIQFEVLDGLAGKFKGLKP 390


>gi|332159793|ref|YP_004296370.1| putative DEAD-box helicase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664023|gb|ADZ40667.1| putative DEAD-box helicase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 423

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 135/418 (32%), Positives = 209/418 (50%), Gaps = 9/418 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P V+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 5   KFSDFALHPLVIEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFH 64

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                  +   +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 65  YLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQVTGLKLGLAYGGDGYDKQLK 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 125 VLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 185 DKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQ-KTGHRIQEELFYPSNEEKMRLLQ 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL +F +G + 
Sbjct: 244 TLIEEEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLD 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 304 ILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNL 363

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            AIE      +     +    L+ L  P         N  R+N+   +     + RK+
Sbjct: 364 PAIETYTGHSIPVSKYNSDALLTDLPAPKRLARTRTGNGPRRNSAPRRSGAPRNNRKR 421


>gi|318607668|emb|CBY29166.1| ATP-dependent RNA helicase RhlB [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 428

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 135/418 (32%), Positives = 209/418 (50%), Gaps = 9/418 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P V+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPLVIEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                  +   +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQVTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 DKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQ-KTGHRIQEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL +F +G + 
Sbjct: 249 TLIEEEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            AIE      +     +    L+ L  P         N  R+N+   +     + RK+
Sbjct: 369 PAIETYTGHSIPVSKYNSDALLTDLPAPKRLARTRTGNGPRRNSAPRRSGAPRNNRKR 426


>gi|238765157|ref|ZP_04626090.1| ATP-dependent RNA helicase rhlB [Yersinia kristensenii ATCC 33638]
 gi|238696647|gb|EEP89431.1| ATP-dependent RNA helicase rhlB [Yersinia kristensenii ATCC 33638]
          Length = 428

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 135/418 (32%), Positives = 209/418 (50%), Gaps = 9/418 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P V+ A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPLVIEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                  +   +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQITGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 DKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQ-KTGHRIQEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL +F +G + 
Sbjct: 249 TLIEEEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            AIE      +     +    L+ L  P         N  R+N+   +     + RK+
Sbjct: 369 PAIETYTGHSIPVSKYNSDALLTDLPAPKRLARTRTGNGPRRNSAPRRSGAPRNNRKR 426


>gi|229587022|ref|YP_002845523.1| ATP-dependent RNA helicase RhlE [Rickettsia africae ESF-5]
 gi|228022072|gb|ACP53780.1| ATP-dependent RNA helicase RhlE [Rickettsia africae ESF-5]
          Length = 410

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 142/422 (33%), Positives = 227/422 (53%), Gaps = 15/422 (3%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
            +  LS +++ A+      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP++   
Sbjct: 2   KNFNLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLIDSF 61

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            K +         IL PTRELA Q+     K   +Y +  A+LIGG P   Q  +L++  
Sbjct: 62  IKNKTTAL-----ILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQLKKNP 116

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG    ++ I   +P  RQ L+F
Sbjct: 117 KVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPDKRQVLMF 176

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM   +  VS+ +L NP RI V   +  A  I+          S K        Q  +
Sbjct: 177 SATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQ----ESMHVSDKEKFSALTKQLGN 232

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
              + IIF   K++   L   L+ +  +  AIHG++ QR R +++ +F++   ++MVA+D
Sbjct: 233 REGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVATD 292

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +D+    AI++L
Sbjct: 293 VAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIRWRAIDRL 352

Query: 364 IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLK 423
           + K      G+ +  +      +  + +  ++     +K   FD  +K+     S+   +
Sbjct: 353 VNK------GESTPRSEFRSDKNNRKRSFGKRAGGDGKKFNAFDSSRKSTFDGNSYGNKR 406

Query: 424 ES 425
           + 
Sbjct: 407 KK 408


>gi|254449290|ref|ZP_05062736.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium HTCC5015]
 gi|198261099|gb|EDY85398.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium HTCC5015]
          Length = 433

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 133/408 (32%), Positives = 214/408 (52%), Gaps = 14/408 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F++LGLS  ++ ++   G+   TPIQ +T+PLVL+  D+ G AQTGTGK+A+F++     
Sbjct: 11  FSELGLSDALLDSIQATGFEYCTPIQAQTLPLVLKGQDIAGQAQTGTGKSAAFLIATFER 70

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                     + +  R LIL PTRELA Q+  + E+ G+  +L +AL  GG  +E Q K 
Sbjct: 71  LLRQPAPAERKPQQVRALILAPTRELAIQIHKDAEQLGQATDLKLALAYGGANYEQQRKT 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +E GADVLI TPGRI+D++ +    +   +++V+DEADRM D+GFI  ++ +    P  +
Sbjct: 131 IEAGADVLIGTPGRIIDYWKQKVFDLKYCQVVVLDEADRMFDLGFISDVRYLMRRCPEPK 190

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L    + T  L+     +       ++   +             +    +K  L    
Sbjct: 191 QRLSLLFSATLSLRVQELAYEHMDNPTKIEVAAEQVTADRVEQYLYHPANDEKIPL-LLG 249

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L      +  IIF N K+N   +   L+  G     + G++ Q+ R +++  FK G +  
Sbjct: 250 LFKHYQPQRSIIFVNTKRNADTVWGYLKGNGIEAALLSGDVPQKKRTRMVEQFKAGELTA 309

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RGL +P V HVFN+D+P  AE+Y+HRIGRT RAG  G A +   ++   ++ 
Sbjct: 310 LVATDVASRGLHVPGVSHVFNYDLPQSAEDYVHRIGRTARAGESGYALSFACEDTAFNLM 369

Query: 359 AIEKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
            IE+ IE  +    ++ DL +   P  K +       R+  P P +  
Sbjct: 370 DIEEYIEGSIPTAAVSADLLATPEPPIKRE-------RRRGPPPNRKG 410


>gi|115910860|ref|XP_001177628.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68
           [Strongylocentrotus purpuratus]
 gi|115968720|ref|XP_001178951.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68 isoform 1
           [Strongylocentrotus purpuratus]
          Length = 600

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 120/387 (31%), Positives = 204/387 (52%), Gaps = 4/387 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +      V+  +  +G+  PTPIQ +  P+ L   D+ GIA TG+GKT S++LP + 
Sbjct: 110 EFHEASFPDYVMGELSKSGFSHPTPIQAQGWPVALSGRDLVGIAATGSGKTLSYLLPSIV 169

Query: 62  ILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +         V  P  L+L PTRELA QV      +G++  +    + GG P   Q + 
Sbjct: 170 HINHQPFLERGVDGPIALVLAPTRELAQQVQQVAFAFGRSSKIKSTCVYGGAPKGQQIRD 229

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D     K  +     +V+DEADRMLDMGF P I+ I   +   R
Sbjct: 230 LERGVEICIATPGRLIDFLENNKTNLRRCTYVVLDEADRMLDMGFEPQIRKIMEQIRPDR 289

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQ 237
           Q  ++SAT   +++ ++E+F+++   + + + + +A       +       K    +   
Sbjct: 290 QVQMWSATWPKDVRNLAEDFIRDYIMVNIGSLTLSANHNILQIIDVCEDSEKDKKLIQLL 349

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               Q+     ++FC  K+   +L   + + G+    +HG+  Q  R  +LS F++G   
Sbjct: 350 EEIMQEKDNKTLVFCETKRRTDDLVRRMRRDGWPAMCLHGDKSQPERDWVLSEFRDGRAP 409

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A+RGLD+ D+  V N+D PN +E+Y+HRIGRT R+ R G A+T   + ++K  
Sbjct: 410 ILVATDVASRGLDVTDIKFVINYDYPNSSEDYVHRIGRTARSTRTGTAYTFFTRNNMKQA 469

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEK 384
             +  ++++    +N  L SL     +
Sbjct: 470 ADLINVLQEAKQVINPKLISLAEEANR 496


>gi|217073124|gb|ACJ84921.1| unknown [Medicago truncatula]
          Length = 413

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 194/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  SFDAMGLQENLLRDIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     V   + L+L PTR+LA Q+       G    + V   +GG       + L  
Sbjct: 101 QLDYS---VTECQALVLAPTRKLAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSS 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   ++F N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVVFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V  +D + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLSDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     ++ L  +++ L
Sbjct: 396 KFYNVLIEELPSNVAEL 412


>gi|156554399|ref|XP_001604593.1| PREDICTED: similar to DEAD box polypeptide 5 [Nasonia vitripennis]
          Length = 551

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 126/381 (33%), Positives = 203/381 (53%), Gaps = 5/381 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +      V+  +   GY +PTPIQ +  P+ +   ++ GIAQTG+GKT +++LP +  
Sbjct: 127 FEEGNFPDYVMQGIKKQGYSEPTPIQAQGWPIAMSGKNMVGIAQTGSGKTLAYILPAIVH 186

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +   +   R   P  LIL PTRELA Q+      +G    +    + GG P   Q + LE
Sbjct: 187 INSQQPLNRGDGPIALILAPTRELAQQIQTVASDFGSLSYVRNTCIFGGAPKGGQARDLE 246

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 247 RGVEIVIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 306

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL---QQ 237
           L++SAT   E++ ++E +L +  ++ + +    A       +    +  K+  L    Q+
Sbjct: 307 LMWSATWPKEVRMLAEEYLVDYTQLNIGSLQLAANHNILQIIDVCQEQEKETKLGTLLQE 366

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +    D     IIF   KK V N+  ++ + G+    +HG+  Q+ R  +L  F+     
Sbjct: 367 IGNVNDDGGKTIIFVETKKKVENITRNIRRYGWPAVCMHGDKSQQERDYVLREFRNKKGS 426

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+ DV +V NFD P+ +E+YIHRIGRTGR+   G ++     ++ +  
Sbjct: 427 ILVATDVAARGLDVDDVRYVINFDYPSSSEDYIHRIGRTGRSQSSGTSYAFFTPQNGRQA 486

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             +  ++ +    +N  LS L
Sbjct: 487 KDLINVLREANQIINPKLSEL 507


>gi|322384200|ref|ZP_08057910.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321151092|gb|EFX44409.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 486

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 148/365 (40%), Positives = 219/365 (60%), Gaps = 8/365 (2%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
            G+ + TPIQ KTIPL LQ HD+ G AQTGTGKTA+F +P++  ++    ++     L++
Sbjct: 1   MGFEEATPIQAKTIPLALQGHDLIGQAQTGTGKTAAFGVPLINKIDTAADKIVA---LVM 57

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QVA+   K G+   +    + GG     Q + L++   ++I TPGR+LDH N
Sbjct: 58  CPTRELAIQVAEEISKLGRFKGIRSLPIYGGQDIVKQIRALKKKPQIIIGTPGRLLDHIN 117

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           R  + +  +E +V+DEAD MLDMGF+  IQ+I S VP  R T+LFSATM   +QK++  F
Sbjct: 118 RKTIKLEGVETVVLDEADEMLDMGFMDDIQSILSQVPEERHTMLFSATMPPNIQKLAHQF 177

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           L+NP+ + V     +A  I     A    + K+       L   +  +  IIF   K+ V
Sbjct: 178 LRNPQHVSVIPKQVSAPLIAQ---AYIEVHEKQKFEALSRLLDMEAPELAIIFGRTKRRV 234

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             L  +L+K+G++   +HG++ Q  R  ++  F++G+I ++VA+D+AARGLD+  V HV 
Sbjct: 235 DELSEALQKRGYAAEGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARGLDVSGVSHVI 294

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           NFD+P   E+Y+HRIGRTGRAG+ G A+T V   +I H+  IEK+   K+      L SL
Sbjct: 295 NFDLPQDPESYVHRIGRTGRAGKEGTAWTFVTPREIDHLHFIEKVTRHKISRKP--LPSL 352

Query: 379 NPPLE 383
              +E
Sbjct: 353 AEAME 357


>gi|300721423|ref|YP_003710694.1| putative ATP-dependent helicase with nucleoside triP hydrolase
           domain [Xenorhabdus nematophila ATCC 19061]
 gi|297627911|emb|CBJ88457.1| putative ATP-dependent helicase with nucleoside triP hydrolase
           domain [Xenorhabdus nematophila ATCC 19061]
          Length = 427

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 134/416 (32%), Positives = 216/416 (51%), Gaps = 9/416 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKV+ A+   G+   TPIQ  T+P  ++  DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVLGALDKKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKTLAFLASTFH 69

Query: 62  ILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L         ++  PR LI+ PTRELA Q+  + ++  +   L + L  GG  ++ Q K
Sbjct: 70  YLLTHPAGKERKINQPRALIMAPTRELAVQIYSDAKELAEVTGLKMGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D++I T GR++D+  +G + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDIVIGTTGRLIDYAKQGHIHLGAIQVVVLDEADRMYDLGFIKDIRWLFRRIPAA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 TERLNLLFSATLSYRVRELAFEQMNNPEYVEVEPLQ-KTGHRIREELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLLEEEWPDRCIIFANTKHRCEDIWTHLAADGHRVGLLTGDVAQKKRLRILEEFSLGNLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E + ++
Sbjct: 309 ILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYVLNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            +IE+ I+ ++     +    L  L  P  +       H R+ N   + +   +R+
Sbjct: 369 PSIEEYIQHQIPVSKYNSDALLKDLPVPKRRNRTRPGGHPRRINMPRRGNPTRNRK 424


>gi|242371572|ref|ZP_04817146.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
 gi|242350724|gb|EES42325.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
          Length = 525

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 130/383 (33%), Positives = 207/383 (54%), Gaps = 13/383 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S K V  +   G+ +PTPIQ  +IP  L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 19  NFKELGISDKTVQTLESMGFKEPTPIQKDSIPYALKGDDILGQAQTGTGKTGAFGIPLIE 78

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +          ++LIL PTRELA QVA+   ++ K   + V  + GG+P + Q K L+R
Sbjct: 79  KVVGQ----EGVQSLILAPTRELAMQVAEQLREFSKGQRVQVVTVFGGMPIDRQIKALKR 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L  ++I  L++DEAD M++MGFI  ++ I   +P  ++  
Sbjct: 135 GPQIVVGTPGRVIDHLNRRTLKTHDIHTLILDEADEMMNMGFIDDMRFIMDKIPADQRQT 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     F     +  K           
Sbjct: 195 MLFSATMPKAIQELVQQFMKTPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFT--NFLD 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 253 VHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVA 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 313 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 372

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
            +  ++++       +L PP  K
Sbjct: 373 DVNGRRMN-------ALRPPHRK 388


>gi|158294546|ref|XP_315671.4| AGAP005652-PA [Anopheles gambiae str. PEST]
 gi|157015613|gb|EAA11703.5| AGAP005652-PA [Anopheles gambiae str. PEST]
          Length = 728

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 136/384 (35%), Positives = 208/384 (54%), Gaps = 3/384 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           M+F D GL   ++  +   G+ KPT IQ + +P+ L   D+ GIAQTG+GKT ++V+P  
Sbjct: 111 MEFEDGGLPVYIMEELKRQGFAKPTAIQAQGMPIALSGRDMVGIAQTGSGKTLAYVVPSL 170

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +    +    R   P  LIL PTRELA Q+      +G   +     + GG P   Q + 
Sbjct: 171 VHIQHQATIRRGDGPIALILAPTRELAQQIQQVATDFGSRVSANNTCVFGGAPKGPQIRD 230

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERGA+++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 231 LERGAEIVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIMGQIRPDR 290

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQ 237
           Q L++SAT   E++ ++E FL +  +I + + + +A       V     Y K    +   
Sbjct: 291 QVLMWSATWPKEVRNLAEEFLADYIQINIGSLNLSANHNILQIVDVCEDYEKDQKLMKLL 350

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              S +     IIF   K+ V ++   + + G+   AIHG+  Q+ R  +LS F+ G   
Sbjct: 351 TEISAEPDTKTIIFVETKRRVDDITRIVNRNGWRAVAIHGDKSQQERDYVLSTFRNGRQG 410

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    +    
Sbjct: 411 ILVATDVAARGLDVEDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTNSNANKA 470

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPP 381
           + +  ++ +    +N  L  L  P
Sbjct: 471 NDLINVLREANQVINPRLVELAKP 494


>gi|118575685|ref|YP_875428.1| superfamily II helicase [Cenarchaeum symbiosum A]
 gi|118194206|gb|ABK77124.1| superfamily II helicase [Cenarchaeum symbiosum A]
          Length = 434

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 142/411 (34%), Positives = 226/411 (54%), Gaps = 10/411 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+   V+ A+ D G+ K  PIQ   IP++L   DV G A TGTGKT ++ + ML 
Sbjct: 3   KFEELGIKQNVLDALRDMGFEKAFPIQEAAIPVLLTGRDVVGQAHTGTGKTGAYSISMLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++G       + LI+ PTRELA Q+ +  +K+ K   +    + GG     Q   L+R
Sbjct: 63  EIKEG----GGIQGLIVAPTRELAVQITEEVKKFAKYTKVRPVAIYGGQSMGVQLDALKR 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA++L+ TPGR++DH  RG + ++ +  LV+DEAD MLDMGFI  IQ I  L P  +   
Sbjct: 119 GAEILVATPGRLIDHIKRGSISIDRVTHLVLDEADTMLDMGFIDDIQFILDLTPDEKVMS 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+ ++SE +L+NPK+  ++    + E I     +      ++          
Sbjct: 179 LFSATMPIEILRLSEEYLKNPKQFLLDADDLSGEGI---DQSYLVIRDREKMDYLVDFIK 235

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++     I+FC+ K    ++   L K+ +   AI G++ Q  R + +S F+    Q++VA
Sbjct: 236 ENGKGQTIVFCSTKYRTRDVARMLHKRNYGAVAIEGDMSQHRREQSMSRFRTAKAQILVA 295

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+P V  V N+DVPN+   Y HRIGRT RAG  G+A TLV+   +   D I+
Sbjct: 296 TDVAARGIDVPRVALVVNYDVPNQEMIYFHRIGRTARAGAKGRAITLVSYSSVSEFDVIK 355

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           + I+ KV +LN ++  +    + +   +   AR+     +       R+++
Sbjct: 356 RQIKAKVTYLNDEMGIVVKIPDPL---KRESARRRGGPQRLGQRRQSRERS 403


>gi|39995629|ref|NP_951580.1| ATP-dependent RNA helicase RhlB [Geobacter sulfurreducens PCA]
 gi|39982392|gb|AAR33853.1| ATP-dependent RNA helicase RhlB [Geobacter sulfurreducens PCA]
 gi|307634711|gb|ADI83374.2| ATP-dependent RNA helicase RhlB [Geobacter sulfurreducens KN400]
          Length = 443

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 143/379 (37%), Positives = 210/379 (55%), Gaps = 5/379 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADL L  +V+  V DAG+   TPIQ KT+PL L   DV G AQTGTGKTA+F++ + 
Sbjct: 1   MKFADLNLPEQVMQGVADAGFSDCTPIQEKTLPLSLGGKDVAGQAQTGTGKTAAFLISLF 60

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           T L +       R PR +IL PTREL  Q+  + +  G +   T+  + GG+ +  Q   
Sbjct: 61  TKLLRSGRGGERRHPRAIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYGGVDYMKQKNA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ GADV++ TPGR++D+  +    +  IE+LVIDEADRM DMGFI  ++ I   +P   
Sbjct: 121 LKEGADVVVGTPGRLIDYLKQKVYSLKEIEMLVIDEADRMFDMGFIADLRFILRRLPPYD 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +      + T   + +   +       +V        T E      Y    K+   L   
Sbjct: 181 KRQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQM-TAERVEQVLYHVGRKEKFPLLLG 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  ++ M+  +IF N K+    L   L    F    I G+++QR R+KIL +FK G + +
Sbjct: 240 LLRKEGMERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDFKSGKLPI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+D+A+RGL I  V HV N+D+P  AE+Y+HRIGRT RAG  GKA ++  ++   H++
Sbjct: 300 MIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISMADEDGAFHLE 359

Query: 359 AIEKLIEKKV--DWLNGDL 375
           AI + I+ K+  +W   DL
Sbjct: 360 AIHEYIKDKIPVEWAEDDL 378


>gi|328780921|ref|XP_394723.3| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
           mellifera]
          Length = 726

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 138/437 (31%), Positives = 216/437 (49%), Gaps = 19/437 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +      V+  +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP    
Sbjct: 108 FEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPATVH 167

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  LIL PTRELA Q+      +G +  +    + GG P   Q + LE
Sbjct: 168 INHQPRLSRGDGPIVLILAPTRELAQQIQSVARDFGSSSCIRNTCIFGGSPKGPQARDLE 227

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 228 RGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 287

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCALLQQLL 239
           L++SAT   E+Q ++E+FL +  +I + + +  A       V    ++ K          
Sbjct: 288 LMWSATWPKEVQALAEDFLSDYIQINIGSLTLAANHNIRQIVEICQEHEKEMKLSNLLRE 347

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +D     IIF   KK V ++  +++++G+   +IHG+  Q  R  +LS F+ G   ++
Sbjct: 348 IGKDRGSKMIIFVETKKKVDDITKAIKREGWPAISIHGDKSQPERDYVLSEFRNGKTMIL 407

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV +V NFD PN +E+YIHRIGRTGR    G A+      + +    
Sbjct: 408 VATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNNARQAKE 467

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +  ++E+    +N  L+ L                 N+  P    G  R   + S++ + 
Sbjct: 468 LISVLEEAGQAINPQLADL----------------ANSIKPAYGKGRQRWSHSRSNKDNS 511

Query: 420 IPLKESEKISKLQQDIQ 436
                    S +  + Q
Sbjct: 512 STGSPRNNSSPISNNWQ 528


>gi|73965233|ref|XP_861802.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 12 [Canis
           familiaris]
          Length = 486

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 128/381 (33%), Positives = 203/381 (53%), Gaps = 3/381 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 154 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 213

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 214 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             +  ++ +    +N  L  L
Sbjct: 454 SDLISVLREANQAINPKLLQL 474


>gi|120537661|gb|AAI29276.1| Vasa protein [Danio rerio]
          Length = 688

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 142/431 (32%), Positives = 225/431 (52%), Gaps = 31/431 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 249 MTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 308

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                        + ++ P  +I+ PTREL  Q+     K+     +   ++ GGI    
Sbjct: 309 QRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGY 368

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
             +++ +G +VL  TPGR+ D   RGK+ ++ +  LV+DEADRMLDMGF P ++      
Sbjct: 369 TIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEPEMRKLVASP 428

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++Q+++ +FL+             A +     +    QYSK
Sbjct: 429 GMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQVDQYSK 488

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  LL+ L  + +  +  ++F   K++   +   L ++  S  +IHG+ +QR R K LS+
Sbjct: 489 RDQLLELLRATGN--ERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSD 546

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI  V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 547 FRLGQCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFFN 606

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            E D     ++       V  L+G    +   LE++  + H            +TGF+ R
Sbjct: 607 PESDTPLARSL-------VKVLSGAQQVVPKWLEEVAFSAH-----------GTTGFNPR 648

Query: 410 KKNYSSQKSHI 420
            K ++S  S  
Sbjct: 649 GKVFASTDSRK 659


>gi|107099414|ref|ZP_01363332.1| hypothetical protein PaerPA_01000426 [Pseudomonas aeruginosa PACS2]
          Length = 624

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 162/438 (36%), Positives = 237/438 (54%), Gaps = 15/438 (3%)

Query: 17  LDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-------MLTILEKGRAR 69
             AGY +PTP+Q + IP VLQ  D+   AQTGTGKT  F LP             + R  
Sbjct: 2   EAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFPAGHPDREHRHG 61

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
            R  R L+L PTRELAAQV D+F+ Y ++  L    + GG+    Q + L +G DVL+  
Sbjct: 62  PRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMNPQIQALAKGVDVLVAC 121

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGR+LD   + K+ ++++EILV+DEADRMLDMGFI  ++ + + +P  RQ LLFSAT + 
Sbjct: 122 PGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPPKRQNLLFSATFSK 181

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
           ++  ++   L NP+RIEV  P++T E IE       A   +          +    +  +
Sbjct: 182 DIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALLAHL---VTVGAWEQVL 238

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           +F   K     L   L K G    AIHGN  Q +R K L++FK   ++++VA+D+AARGL
Sbjct: 239 VFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRILVATDIAARGL 298

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           DI  + HV N+++PN  E+Y+HRIGRTGRAGR G+A +LVA ++ K + AIEK+  +++ 
Sbjct: 299 DIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKAIEKMTRQRIP 358

Query: 370 WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKIS 429
             +GD    +P     ++AQ          P++      R+ +   +         +   
Sbjct: 359 --DGDAQGFDPEAVLPEVAQPEPREAPQKQPRRD---KERRSSRERKPKDAQASNPDSNV 413

Query: 430 KLQQDIQENDADSLGFRG 447
              QD  E  A     RG
Sbjct: 414 AAAQDGTEKPAGKRRRRG 431


>gi|19482136|gb|AAL89410.1|AF461759_1 vasa-like protein [Danio rerio]
          Length = 715

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 142/431 (32%), Positives = 225/431 (52%), Gaps = 31/431 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 276 MTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 335

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                        + ++ P  +I+ PTREL  Q+     K+     +   ++ GGI    
Sbjct: 336 QRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGY 395

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
             +++ +G +VL  TPGR+ D   RGK+ ++ +  LV+DEADRMLDMGF P ++      
Sbjct: 396 TIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEPEMRKLVASP 455

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++Q+++ +FL+             A +     +    QYSK
Sbjct: 456 GMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQVDQYSK 515

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  LL+ L  + +  +  ++F   K++   +   L ++  S  +IHG+ +QR R K LS+
Sbjct: 516 RDQLLELLRATGN--ERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSD 573

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI  V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 574 FRLGQCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFFN 633

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            E D     ++       V  L+G    +   LE++  + H            +TGF+ R
Sbjct: 634 PESDTPLARSL-------VKVLSGAQQVVPKWLEEVAFSAH-----------GTTGFNPR 675

Query: 410 KKNYSSQKSHI 420
            K ++S  S  
Sbjct: 676 GKVFASTDSRK 686


>gi|167032455|ref|YP_001667686.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida GB-1]
 gi|166858943|gb|ABY97350.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 560

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 139/386 (36%), Positives = 228/386 (59%), Gaps = 9/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L+P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++  +     P+ LIL PTRELA QVA  FE Y K       + +  G P   Q + +  
Sbjct: 68  IDVSKRE---PQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + +++ ++ LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++    ++ +  +     +  +T+     A    ++ +       L  
Sbjct: 185 LFSATLPSSIRSIA---ERHLREPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVLRLLE 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 242 VEEFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKI 385
           ++  +KV    L    + L+  ++K+
Sbjct: 362 RVTGQKVAEARLPNAQAVLDARIKKL 387


>gi|26988598|ref|NP_744023.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440]
 gi|148549053|ref|YP_001269155.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida F1]
 gi|24983373|gb|AAN67487.1|AE016375_5 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
           KT2440]
 gi|148513111|gb|ABQ79971.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
 gi|313499970|gb|ADR61336.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida BIRD-1]
          Length = 559

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 139/386 (36%), Positives = 228/386 (59%), Gaps = 9/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L+P +V AV+  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++  +     P+ LIL PTRELA QVA  FE Y K       + +  G P   Q + +  
Sbjct: 68  IDVSKRE---PQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + +++ ++ LV+DEAD ML +GF+  ++ I   +P TRQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++    ++ +  +     +  +T+     A    ++ +       L  
Sbjct: 185 LFSATLPSSIRSIA---ERHLREPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVLRLLE 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 242 VEEFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKI 385
           ++  +KV    L    + L+  ++K+
Sbjct: 362 RVTGQKVAEARLPNAQAVLDARIKKL 387


>gi|313205893|ref|YP_004045070.1| dead/deah box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|312445209|gb|ADQ81564.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|315022205|gb|EFT35233.1| ATP-dependent RNA helicase [Riemerella anatipestifer RA-YM]
 gi|325336667|gb|ADZ12941.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
           RA-GD]
          Length = 449

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 129/403 (32%), Positives = 209/403 (51%), Gaps = 10/403 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FAD  L  K++  + D    +PTPIQ K+   +L   D+ GIAQTGTGKT +++LP+L
Sbjct: 3   ITFADFELPEKILDILADLELFEPTPIQQKSFKPILSGRDIMGIAQTGTGKTLAYLLPVL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +    +   P  L+L PTREL  QVA+  EK  +  +  +  + GG     Q    +
Sbjct: 63  KNWKYN--KSGNPTVLVLVPTRELVVQVAEILEKLCEKLSTRIIGVYGGKNINTQKLLFD 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGR++D      + +  ++ L+IDE D ML++GF P + +I  ++   RQ 
Sbjct: 121 NGCDILVGTPGRVMDLAIDNAISLKEVQKLIIDEFDEMLNLGFRPQLTHIFEMMREKRQN 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTD + ++ + +  NP  I +    +  E I+          +K   L   L +
Sbjct: 181 ILFSATMTDAVDEMLDEYFANPIEISLAKSGTPLEKIQQIAFKVTNFNTKINFLQHLLDK 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   K  I   N+K          E    S   IH N  Q  R++ +  F++  ++ ++
Sbjct: 241 DKSMSKVLIFCNNKKHADYLFTKIDEIYPESFDVIHSNKSQNYRLRAMKKFEQEEVRGLI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+ ARGLDI D+ HV NF++P+  E YIHRIGRTGRA + G A + + +++      I
Sbjct: 301 TTDVMARGLDISDISHVINFEIPDIPEQYIHRIGRTGRADKDGIALSFITEKEEALFLDI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           E L++K+V+        + P  E++ I     A +   +  K+
Sbjct: 361 EILMKKEVE--------VQPMPEEVKINPQKIASEKEEVKMKN 395


>gi|104780746|ref|YP_607244.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95109733|emb|CAK14434.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           entomophila L48]
          Length = 562

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 140/386 (36%), Positives = 228/386 (59%), Gaps = 9/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L+P +V AVL  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAALELNPNIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++  +     P+ LIL PTRELA QVA  FE Y K       + +  G P   Q + +  
Sbjct: 68  IDVSKRE---PQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + +++ ++ LV+DEAD ML +GF+  ++ I   +P +RQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPASRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++    ++ +  +     S  +T+     A    ++ +       L  
Sbjct: 185 LFSATLPSSIRSIA---ERHLREPKHVKIQSKTQTVTAIDQAHLMVHADQKIPAVLRLLE 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 242 VEEFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKI 385
           ++  +KV    L    + L+  ++K+
Sbjct: 362 RVTGQKVAEARLPNAQAVLDARIKKL 387


>gi|109900519|ref|YP_663774.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas atlantica T6c]
 gi|122971428|sp|Q15N18|RHLB_PSEA6 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|109702800|gb|ABG42720.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 421

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 135/414 (32%), Positives = 221/414 (53%), Gaps = 9/414 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL ++ +VV A+  A +   TPIQ  ++P +L+ +D+ G AQTGTGKT +F++     
Sbjct: 11  FADLPINEQVVKALSAANFSHCTPIQALSLPPLLEGNDIAGQAQTGTGKTIAFLVATFHY 70

Query: 63  L-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L    +   + PR +I+ PTRELA Q+ ++ E   ++  L++ L+ GG  +++Q +KLE 
Sbjct: 71  LLSNPQPTKKQPRAIIMAPTRELAVQIFNDAELLSQHTGLSLGLIYGGEGYQSQREKLEE 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D++I T GRI+D++ +    +  I++ V+DEADRM D+GFI  I+ + + +P   + L
Sbjct: 131 GVDIIIGTTGRIIDYYKQNIFSLAGIQVAVLDEADRMFDLGFIKDIRYLFNRMPKPTERL 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
               + T   +     +        V       +T        +    +    L   L  
Sbjct: 191 SMLFSATLSYRVQELAYEHMDNPTHVQVEPER-KTGTRIKEELFYPSDEDKMALLLSLME 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++     I+F N K +   +   L+  G  V  + G++ Q  R+KIL +F  G + ++VA
Sbjct: 250 EEWPDKAIVFANTKHSCEKVADWLQADGHRVGLLSGDVPQNKRLKILEDFTSGKLDILVA 309

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGL IP V HVFN+D+P+ AE+Y+HRIGRTGRAG+ G + +   +    ++ AIE
Sbjct: 310 TDVAARGLHIPMVSHVFNYDLPDDAEDYVHRIGRTGRAGQSGSSISFACERYALNLPAIE 369

Query: 362 KLIEKKVD--WLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
             IE  +       D  L  + PP  +      N     NP  ++S+G   R+K
Sbjct: 370 TYIEHAIPVTEYQADALLRDVTPPKPRHKKRMQNG---RNPQKRQSSGSRNRRK 420


>gi|299538292|ref|ZP_07051577.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
 gi|298726494|gb|EFI67084.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
          Length = 507

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 137/370 (37%), Positives = 219/370 (59%), Gaps = 6/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L +S   + +V   G+ + TPIQ  TI   ++  DV G AQTGTGKTA+F +P++ 
Sbjct: 3   NFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +    + L++ PTRELA QV++   K G +  + +  + GG     Q + L+ 
Sbjct: 63  KIDP---KNPNIQALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRALKN 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI+DH NR  L + +++ LV+DEAD ML+MGFI  I +I   VP  RQTL
Sbjct: 120 KPQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPSERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K++E F+++P+ +++     T + I            ++   +   L +
Sbjct: 180 LFSATMPPAIRKIAETFMRDPEIVKIKAKELTVDNI---DQYFVKSAEREKFDVLSRLLN 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  IIF   K+ V  L  +L  +G+    IHG++ Q  R+ +L  FKE  I ++VA
Sbjct: 237 VHQPELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLRIVE 356

Query: 362 KLIEKKVDWL 371
           +  +K++  L
Sbjct: 357 ETTKKRMTPL 366


>gi|307110010|gb|EFN58247.1| hypothetical protein CHLNCDRAFT_30080 [Chlorella variabilis]
          Length = 551

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 127/376 (33%), Positives = 205/376 (54%), Gaps = 3/376 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
           +F +      V+  +  AG+ +P+PIQ +  P+ L   D+ GIA+TG+GKT +++LP  +
Sbjct: 129 NFEEASFPEYVLAEIQRAGFTEPSPIQAQGWPMALLGRDLVGIAETGSGKTLAYLLPGVV 188

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +   +    P  L L PTRELA Q+ +   ++G    +    + GG P   Q   L
Sbjct: 189 HINAQAHLSPGDGPIVLCLAPTRELAVQIQNECARFGSTSRIKSTCVYGGAPKGPQANDL 248

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 249 RRGVEIVIATPGRLIDFLESRTTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQ 308

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLL+SAT   E+Q ++  FL NP ++ + +P   A           A++ K    L ++L
Sbjct: 309 TLLWSATWPKEIQTLAREFLNNPYQVLIGSPDLKANHRITQIFDFPAEHEKY-QKLVRVL 367

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +   +  +IF   KK    +   L   G+   +IHG+  Q  R  +L+ FK G   +M
Sbjct: 368 EKEMDGRRILIFLETKKGCDAVTRQLRMDGWPALSIHGDKSQHERDWVLAEFKAGKHPIM 427

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+ D+  V N+D+P+ AE+Y+HRIGRTGRAG  G A++     + +    
Sbjct: 428 IATDVAARGLDVKDIKMVINYDMPSCAEDYVHRIGRTGRAGASGAAYSFFTAANGRMARQ 487

Query: 360 IEKLIEKKVDWLNGDL 375
           + +++E+    +  +L
Sbjct: 488 LVQILEEASQAVPPEL 503


>gi|195330800|ref|XP_002032091.1| GM23704 [Drosophila sechellia]
 gi|194121034|gb|EDW43077.1| GM23704 [Drosophila sechellia]
          Length = 699

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 127/405 (31%), Positives = 208/405 (51%), Gaps = 19/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           FA+    P ++  +   G+ KP+PIQ +  P++LQ HD+ GIAQTGTGKT +F+LP M+ 
Sbjct: 279 FAEY---PDMLGEITKMGFPKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIH 335

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKLE 120
              +   R       +L         +    E    ++    A+ + G      Q   LE
Sbjct: 336 TEYQSTPRGTRGGANVLVLAPTRELALQIEMEVNKYSFRGMKAVCVYGGGDRNMQISDLE 395

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA+++ICTPGR+ D      + ++ I  LV+DEADRMLDMGF P I+ +   +   RQT
Sbjct: 396 RGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVILDIRPDRQT 455

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT    ++++++++++NP ++ V +    A       +        K   +   ++
Sbjct: 456 IMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIKLMEDDMAKFNTITSFVK 515

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  +    IIFC +K    +L   L   GF    IHGN DQ  R + +++ K G ++++V
Sbjct: 516 NMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILV 575

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + +   +ED      +
Sbjct: 576 ATDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGRAGRQGTSISFFTREDWGMAKEL 635

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
             ++++    +  +L              HN AR+   +  K   
Sbjct: 636 IDILQEAEQEVPDEL--------------HNMARRFKAMKDKRAA 666


>gi|307168696|gb|EFN61728.1| Putative ATP-dependent RNA helicase me31b [Camponotus floridanus]
          Length = 443

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 111/375 (29%), Positives = 191/375 (50%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L  +++  + + G+ KP+PIQ  +IP+ L   D+   A+ GTGKT ++ +P+L 
Sbjct: 55  EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDILARAKNGTGKTGAYSIPVLE 114

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    R  + + L++ PTRELA Q +    +  K+ ++ V +  GG        ++ +
Sbjct: 115 QVDP---RREVIQALVIVPTRELALQTSQICIELAKHMDIKVMVTTGGTNLRDDIMRIYQ 171

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGRILD  ++    M + +ILV+DEAD++L   F   + ++ S +P  RQ L
Sbjct: 172 KVQVIIATPGRILDLMDKNVANMEHCKILVLDEADKLLSQDFKGMLDHVISRLPHERQIL 231

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    +++    F++   R           T++           ++       L S
Sbjct: 232 LYSATFPLTVKQ----FMEKHLRDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFS 287

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   +   G+    IH  + Q  R ++  +F+ G  + +V+
Sbjct: 288 KLQITQSIIFCNSTQRVELLAKKITDLGYCCYYIHAKMAQAHRNRVFHDFRAGLCRNLVS 347

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  IE
Sbjct: 348 SDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRFNLHRIE 407

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 408 QELGTEIKPIPKVID 422


>gi|183600257|ref|ZP_02961750.1| hypothetical protein PROSTU_03809 [Providencia stuartii ATCC 25827]
 gi|188020045|gb|EDU58085.1| hypothetical protein PROSTU_03809 [Providencia stuartii ATCC 25827]
          Length = 428

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 134/412 (32%), Positives = 216/412 (52%), Gaps = 10/412 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L PKV+ A+   G+   TPIQ  T+P  ++  DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPKVIEALNKKGFNFCTPIQASTLPFTVEGKDVAGQAQTGTGKTLAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + ++  +   L + L  GG  ++ Q K
Sbjct: 70  YLLTHPSIEGKKVNQPRALIMAPTRELAVQIYSDAKELAEYTGLKMGLAYGGDGYDEQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G D+LI T GR++D+  +G + +N ++++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLQNGVDILIGTTGRLIDYAKQGHIDLNAVQVVVLDEADRMYDLGFIKDIRWLFRRMPAV 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T   +     F Q      +       +T        +   +++   L Q
Sbjct: 190 TERLNLLFSATLSYRVRELAFEQMNSPEYIEVEPLQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++  +  IIF N K     +   L   G  V  + G++ Q+ R++IL  F +G + 
Sbjct: 249 TLLEEEWPERCIIFANTKHRCDEIWAHLAADGHRVGLLTGDVAQKKRLRILEEFTQGNLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            AIE+ I+  +     +    L+ L  P  +    +    R+N+  P++  G
Sbjct: 369 PAIEEYIQHSIPVSKYNSEALLTDLPAPKRRHR-PRPGGPRRNSNSPRRHNG 419


>gi|290562842|ref|NP_001166829.1| DEAD box polypeptide 5 isoform 2 [Bombyx mori]
 gi|95102744|gb|ABF51313.1| DEAD box polypeptide 5 isoform 2 [Bombyx mori]
          Length = 512

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 128/381 (33%), Positives = 209/381 (54%), Gaps = 5/381 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--L 60
           F +      V   V   GY +PTPIQ +  P+ +   ++ G+AQTG+GKT +++LP    
Sbjct: 82  FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 141

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +    R   P  L+L PTRELA Q+      +G    +    + GG P   Q + LE
Sbjct: 142 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 201

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 202 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT 261

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL---QQ 237
           L++SAT   E++K++E++L +  +I + +   +A       V    ++ K+  L    Q+
Sbjct: 262 LMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQE 321

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + QSQ+     IIF   K+   N+  ++ + G+    +HG+  Q+ R ++L  FKEG   
Sbjct: 322 IGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRAS 381

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  + +V NFD PN +E+YIHRIGRTGR+   G ++      + +  
Sbjct: 382 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQA 441

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             +  ++++    ++  L S+
Sbjct: 442 KDLVSVLQEANQIISPQLQSM 462


>gi|89096784|ref|ZP_01169676.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. NRRL B-14911]
 gi|89088799|gb|EAR67908.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. NRRL B-14911]
          Length = 480

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 141/431 (32%), Positives = 236/431 (54%), Gaps = 15/431 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  LS ++  A+    Y  PT +Q K IPL +++ D+   AQTG+GKTASF +P+  
Sbjct: 4   SFADYHLSEEIQRALGVLKYESPTEVQSKVIPLAMEKQDLVVKAQTGSGKTASFGIPVCD 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E      + P+ LIL PTRELA QV ++    G+   +    + G  PF  Q ++L++
Sbjct: 64  MVEW---EEKSPQALILTPTRELAVQVREDITNIGRFKRIKAVAVYGKEPFTKQKEELKQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR++DH +R  L+++ I+ L+IDEAD ML+ GFI  ++ I   +P  R T+
Sbjct: 121 KTHVVVGTPGRVMDHIDRETLVLDRIQYLIIDEADEMLNRGFIDEVEAIIKELPSDRVTM 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +++ +   ++++P  +E+ +   TAETIEH  +    +         + +  
Sbjct: 181 VFSATLPKDVEALCHEYMKDPVHVEIESTGVTAETIEHLLMEVKQEDKISL---LKDITV 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + +IFC  K++V  +   L+  G+S   +HG ++Q  R  ++  FK G  + +VA
Sbjct: 238 TENPDSCLIFCRTKEHVDTVYTELDGAGYSSERLHGGLEQEDRFAVMEGFKMGNYRYLVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI +V  V N+DVP   E+Y+HR GRTGRAG  GKA T     + K + AIE
Sbjct: 298 TDVAARGIDIDNVSLVINYDVPMEKESYVHRTGRTGRAGNKGKAITFATPFEEKFLKAIE 357

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK-NYSSQKSHI 420
           + I  ++  +            + D+A    A +     ++    ++  + N    K H 
Sbjct: 358 RYIGFEIPVIEAP--------SQQDVAAGKAAFEEKISGRRVVRNNKTARINQDIMKLHF 409

Query: 421 PLKESEKISKL 431
              + +KI  +
Sbjct: 410 TGGKKKKIRAV 420


>gi|321252954|ref|XP_003192576.1| RNA helicase [Cryptococcus gattii WM276]
 gi|317459045|gb|ADV20789.1| RNA helicase, putative [Cryptococcus gattii WM276]
          Length = 615

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 186/377 (49%), Gaps = 8/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL  +++  +  AG+ +P+PIQ + IP+ L   D+   A+ GTGKTASF++P L  
Sbjct: 38  FEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNR 97

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLER 121
           +      +   + LIL PTRELA Q +   +  G +     V +  GG        +L++
Sbjct: 98  INTS---LSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQ 154

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD  ++G   +N   I V+DEAD++L   F+P I+   +L P  RQ +
Sbjct: 155 PVHILVGTPGRILDLGSKGIAGLNKCSIFVMDEADKLLSEDFMPVIEQTLALCPQERQVM 214

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++    F                 T++            +       L S
Sbjct: 215 LFSATFPWTVKE----FKDQHMVQPYEINLMDELTLKGVTQYYAYVEESQKVHCLNTLFS 270

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S    H  + Q  R ++  +F+ G  + +V 
Sbjct: 271 KLQINQSIIFCNSTNRVELLAKKVTELGYSCFYSHAKMQQAHRNRVFHDFRNGMTRNLVC 330

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE+Y+HRIGR+GR G  G A +L+  ED  ++  IE
Sbjct: 331 SDLLTRGIDIQAVNVVINFDFPRTAESYLHRIGRSGRFGHLGLAISLLTLEDRHNLYRIE 390

Query: 362 KLIEKKVDWLNGDLSSL 378
             +  ++  +   +  +
Sbjct: 391 SELGTEIAPIPAVIDPV 407


>gi|260770147|ref|ZP_05879080.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
 gi|260615485|gb|EEX40671.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
          Length = 422

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 150/420 (35%), Positives = 231/420 (55%), Gaps = 15/420 (3%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LG++P +V  +   G   PT IQ + IP VL+  DV   AQTGTGKTA+F LP++     
Sbjct: 11  LGIAPALVERLSALGIHTPTEIQAQAIPHVLEGKDVLAGAQTGTGKTAAFGLPLIQRFVD 70

Query: 66  GRARVRMPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +       I      PTRELA QV DN + Y +   L +    GG     Q + L  
Sbjct: 71  HPLQREPNSKDIRALVLVPTRELAQQVFDNLQSYAQGSELKIVTAYGGTSMNVQKQNLRG 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GAD+LI TPGR+LDH +   L + N E LV+DEADRMLDMGF+P IQ +   +   RQTL
Sbjct: 131 GADILIATPGRLLDHAHVKTLYLGNAEALVLDEADRMLDMGFMPDIQRVLRKMQHERQTL 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT   +++  +   +QNP  ++V   +STA+T+       Y    K+   L   L  
Sbjct: 191 FFSATFDSKIKAFAHRMMQNPVEVQVAPSNSTADTV---EQMVYPVDKKRKRELLAYLIG 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  ++F   K+    L   L+  G    +I+G+  Q +R K L +FK G ++ ++A
Sbjct: 248 SRNWQQVLVFTRTKQGSDALAQELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIA 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI  +  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L++ ++   ++AIE
Sbjct: 308 TDVAARGIDIAQLEQVVNFDMPFKAEDYVHRIGRTGRAGKAGFAVSLMSHDEQPLLEAIE 367

Query: 362 KLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +L++K++  +WL G   S       + +++ + A + N    +      + K ++++   
Sbjct: 368 RLLDKRLPQEWLKGYEPS------PVVVSEESQAPRRNSRSAEKRKMKAKLKIHANRGKK 421


>gi|258624240|ref|ZP_05719189.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM603]
 gi|258583391|gb|EEW08191.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM603]
          Length = 452

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 121/386 (31%), Positives = 188/386 (48%), Gaps = 6/386 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML
Sbjct: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLSIAGRDLLASSKTGSGKTLAFVLPML 64

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR +IL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 65  HKSLKTKAFSAKDPRGVILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH +   L ++ +E LV+DEADRMLD+GF   ++ I +     R+
Sbjct: 125 ARDPKFIVATPGRLADHLDHRSLFLDGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D             +   +     + E  +         +      L + +
Sbjct: 185 QTLMFSATLDHADVNDIAMEMLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLERI 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  IIF   + +   L   L +      A+ GN++Q  R  I+S F+    +++
Sbjct: 245 LADAEYRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQAQRNTIMSQFERVVFKIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDIP V HV NFD+P   E Y+HRIGRTGRAG  G A +LV  +D      
Sbjct: 305 VTTDVASRGLDIPTVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAMSLVGPKDWDSFKR 364

Query: 360 IEKLIEKKVDW-----LNGDLSSLNP 380
           +E  +++++ +     L G    L P
Sbjct: 365 VEAFLQQEIQFEVLDGLAGKFKGLKP 390


>gi|58265490|ref|XP_569901.1| RNA helicase [Cryptococcus neoformans var. neoformans JEC21]
 gi|134108933|ref|XP_776581.1| hypothetical protein CNBC0740 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74686062|sp|Q5KJI2|DHH1_CRYNE RecName: Full=ATP-dependent RNA helicase DHH1
 gi|50259261|gb|EAL21934.1| hypothetical protein CNBC0740 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226133|gb|AAW42594.1| RNA helicase, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 625

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 118/377 (31%), Positives = 186/377 (49%), Gaps = 8/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL  +++  +  AG+ +P+PIQ + IP+ L   D+   A+ GTGKTASF++P L  
Sbjct: 38  FEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNR 97

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLER 121
           +      +   + LIL PTRELA Q +   +  G +     V +  GG        +L++
Sbjct: 98  INTS---LSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQ 154

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD  ++G   +N   + V+DEAD++L   F+P I+   +L P  RQ +
Sbjct: 155 PVHILVGTPGRILDLGSKGIASLNKCGVFVMDEADKLLSEDFMPVIEQTLALCPQERQVM 214

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++    F                 T++            +       L S
Sbjct: 215 LFSATFPWTVKE----FKDQHMVQPYEINLMDELTLKGVTQYYAYVEESQKVHCLNTLFS 270

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S    H  + Q  R ++  +F+ G  + +V 
Sbjct: 271 KLQINQSIIFCNSTNRVELLAKKVTELGYSCFYSHAKMQQAHRNRVFHDFRNGMTRNLVC 330

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE+Y+HRIGR+GR G  G A +L+  ED  ++  IE
Sbjct: 331 SDLLTRGIDIQAVNVVINFDFPRTAESYLHRIGRSGRFGHLGLAISLLTLEDRHNLYRIE 390

Query: 362 KLIEKKVDWLNGDLSSL 378
             +  ++  +   +  +
Sbjct: 391 SELGTEIAPIPAVIDPV 407


>gi|255690282|ref|ZP_05413957.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides
           finegoldii DSM 17565]
 gi|260624185|gb|EEX47056.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides
           finegoldii DSM 17565]
          Length = 621

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 145/414 (35%), Positives = 236/414 (57%), Gaps = 21/414 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+SP++  A+ + GY  P P+Q K IP +L + +DV  +AQTGTGKTA+F LP+L
Sbjct: 3   TFEELGVSPEIRRAIEEMGYENPMPVQEKVIPYLLGENNDVVALAQTGTGKTAAFGLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++    + R+P++LIL PTREL  Q+A +   Y K  +    L + G    ++Q + L
Sbjct: 63  QQIDV---KNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD   R  + ++ I  +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KRGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTESINAILADVPKERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+N+LQN K I +   +   E+  +     Y  ++K      + +
Sbjct: 180 TLLFSATMSPEIARISKNYLQNAKEITIGRKN---ESTSNVKHVAYTVHAKDKYEALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+
Sbjct: 237 VDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRE 356

Query: 360 IEKLIEKKVDWLNGDLS-----------SLNPPLEKIDIAQHNHARKNNPIPQK 402
           IE++I KK  ++ G++             +   LEK+ + +   A     I +K
Sbjct: 357 IERIIGKK--FIPGEMPTAAGICQKQLLKVIDELEKVKVNEEEIAEFMPDIYRK 408


>gi|162418242|ref|YP_001605106.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Angola]
 gi|165926343|ref|ZP_02222175.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165939710|ref|ZP_02228253.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166009474|ref|ZP_02230372.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166213643|ref|ZP_02239678.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167402073|ref|ZP_02307552.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167420915|ref|ZP_02312668.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425993|ref|ZP_02317746.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|270488784|ref|ZP_06205858.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294505532|ref|YP_003569594.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Z176003]
 gi|162351057|gb|ABX85005.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Angola]
 gi|165912400|gb|EDR31034.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165921867|gb|EDR39064.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165991396|gb|EDR43697.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166205316|gb|EDR49796.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961044|gb|EDR57065.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167048547|gb|EDR59955.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055141|gb|EDR64940.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|262363598|gb|ACY60319.1| ATP-dependent RNA helicase RhlB [Yersinia pestis D106004]
 gi|262367526|gb|ACY64083.1| ATP-dependent RNA helicase RhlB [Yersinia pestis D182038]
 gi|270337288|gb|EFA48065.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294355991|gb|ADE66332.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Z176003]
          Length = 423

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 136/418 (32%), Positives = 209/418 (50%), Gaps = 9/418 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P VV A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 5   KFSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFH 64

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                  +   +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 65  YLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQVTGLKLGLAYGGDGYDKQLK 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 125 VLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 185 DKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQ-KTGHRIKEELFYPSNEEKMRLLQ 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL +F +G + 
Sbjct: 244 TLIEEEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLD 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 304 ILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNL 363

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            AIE      +     +    L+ L  P         N  R+N+   +     + RK+
Sbjct: 364 PAIETYTGHSIPVSKYNSDALLTDLPAPKRLARTRTGNGPRRNSAPRRSGAPRNNRKR 421


>gi|126651493|ref|ZP_01723697.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905]
 gi|126591746|gb|EAZ85842.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905]
          Length = 513

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 137/370 (37%), Positives = 219/370 (59%), Gaps = 6/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L +S   + +V   G+ + TPIQ  TI   ++  DV G AQTGTGKTA+F +P++ 
Sbjct: 3   NFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +    + L++ PTRELA QV++   K G +  + +  + GG     Q + L+ 
Sbjct: 63  KIDP---KNPNIQALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRALKN 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI+DH NR  L + +++ LV+DEAD ML+MGFI  I +I   VP  RQTL
Sbjct: 120 KPQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPAERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K++E F+++P+ +++     T + I            ++   +   L +
Sbjct: 180 LFSATMPPAIRKIAETFMRDPEIVKIKAKELTVDNI---DQYFVKSAEREKFDVLSRLLN 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  IIF   K+ V  L  +L  +G+    IHG++ Q  R+ +L  FKE  I ++VA
Sbjct: 237 VHQPELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLRIVE 356

Query: 362 KLIEKKVDWL 371
           +  +K++  L
Sbjct: 357 ETTKKRMTPL 366


>gi|22124274|ref|NP_667697.1| ATP-dependent RNA helicase RhlB [Yersinia pestis KIM 10]
 gi|51594521|ref|YP_068712.1| ATP-dependent RNA helicase RhlB [Yersinia pseudotuberculosis IP
           32953]
 gi|108806147|ref|YP_650063.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Antiqua]
 gi|108810260|ref|YP_646027.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Nepal516]
 gi|145600737|ref|YP_001164813.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Pestoides F]
 gi|153947434|ref|YP_001399175.1| ATP-dependent RNA helicase RhlB [Yersinia pseudotuberculosis IP
           31758]
 gi|153997075|ref|ZP_02022208.1| putative DEAD-box helicase [Yersinia pestis CA88-4125]
 gi|170026246|ref|YP_001722751.1| ATP-dependent RNA helicase RhlB [Yersinia pseudotuberculosis YPIII]
 gi|186893519|ref|YP_001870631.1| ATP-dependent RNA helicase RhlB [Yersinia pseudotuberculosis PB1/+]
 gi|218930872|ref|YP_002348747.1| ATP-dependent RNA helicase RhlB [Yersinia pestis CO92]
 gi|229837202|ref|ZP_04457367.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|229839562|ref|ZP_04459721.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229900125|ref|ZP_04515262.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229900428|ref|ZP_04515557.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|32363372|sp|Q8ZAD8|RHLB_YERPE RecName: Full=ATP-dependent RNA helicase rhlB
 gi|56749471|sp|Q66G19|RHLB_YERPS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|122979817|sp|Q1CBQ4|RHLB_YERPA RecName: Full=ATP-dependent RNA helicase rhlB
 gi|123073645|sp|Q1CNK3|RHLB_YERPN RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040087|sp|A4TRC8|RHLB_YERPP RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040117|sp|A7FD47|RHLB_YERP3 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739238|sp|B2K046|RHLB_YERPB RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739239|sp|B1JQ11|RHLB_YERPY RecName: Full=ATP-dependent RNA helicase rhlB
 gi|21957043|gb|AAM83948.1|AE013636_6 putative ATP-dependent RNA helicase [Yersinia pestis KIM 10]
 gi|51587803|emb|CAH19405.1| putative DEAD-box helicase [Yersinia pseudotuberculosis IP 32953]
 gi|108773908|gb|ABG16427.1| DEAD-box helicase [Yersinia pestis Nepal516]
 gi|108778060|gb|ABG12118.1| putative DEAD-box helicase [Yersinia pestis Antiqua]
 gi|115349483|emb|CAL22456.1| putative DEAD-box helicase [Yersinia pestis CO92]
 gi|145212433|gb|ABP41840.1| DEAD-box helicase [Yersinia pestis Pestoides F]
 gi|149289381|gb|EDM39459.1| putative DEAD-box helicase [Yersinia pestis CA88-4125]
 gi|152958929|gb|ABS46390.1| ATP-dependent RNA helicase RhlB [Yersinia pseudotuberculosis IP
           31758]
 gi|169752780|gb|ACA70298.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186696545|gb|ACC87174.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682447|gb|EEO78534.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|229686905|gb|EEO78984.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695928|gb|EEO85975.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229706145|gb|EEO92154.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|320013530|gb|ADV97101.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 428

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 136/418 (32%), Positives = 209/418 (50%), Gaps = 9/418 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P VV A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                  +   +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQVTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 DKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL +F +G + 
Sbjct: 249 TLIEEEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            AIE      +     +    L+ L  P         N  R+N+   +     + RK+
Sbjct: 369 PAIETYTGHSIPVSKYNSDALLTDLPAPKRLARTRTGNGPRRNSAPRRSGAPRNNRKR 426


>gi|325123630|gb|ADY83153.1| ATP-dependent RNA helicase [Acinetobacter calcoaceticus PHEA-2]
          Length = 620

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 143/456 (31%), Positives = 232/456 (50%), Gaps = 11/456 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP L 
Sbjct: 4   TFAEFSLHETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLH 63

Query: 62  I---------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                      ++    V  P  L+L PTRELA QV+ +   + ++        I G   
Sbjct: 64  NLAGQETFVPFKERMKAVTQPNILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             +  +  +GA V++ TPGR+LD  NR +L ++ +E L++DEADRMLD+GF   ++ I+ 
Sbjct: 124 FGKQIQQLKGAQVIVATPGRLLDLVNRRQLKLDKVEALIVDEADRMLDLGFSEDLEAISD 183

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L    RQTL+FSAT  D + +++E  +  P+RI + T  ST   I      T     K  
Sbjct: 184 LAGNRRQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHK-- 241

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L     + +T+   ++F + +++   L   L + G SV A+HG + Q  R + L + +
Sbjct: 242 KKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIR 301

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL    
Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYR 361

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           +   I A+E  ++ ++     +    +PP  +         R  N       G       
Sbjct: 362 ERGKIRALEDYLDARLSVSEIEGLEPSPPPARSGRDGGGRGRGGNGGRDGRRGGGFGGGR 421

Query: 413 YSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
               +S+   +E  +  + ++   +       F G 
Sbjct: 422 RFEGESNFKRREGGRDDRPRRSFDDKPRGERPFGGE 457


>gi|170724880|ref|YP_001758906.1| ATP-dependent RNA helicase RhlB [Shewanella woodyi ATCC 51908]
 gi|226739552|sp|B1KQF6|RHLB_SHEWM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|169810227|gb|ACA84811.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 441

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 137/421 (32%), Positives = 228/421 (54%), Gaps = 9/421 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  L+ ++  A+ ++G+   TPIQ  ++P++LQ+ D+ G AQTGTGKT +F++    
Sbjct: 10  KFADFSLNKEIKTALNESGFEFCTPIQALSLPILLQKKDIAGQAQTGTGKTLAFLVATFD 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      ++  PR +I+ PTRELA Q+A +     K+  L V ++ GG  ++ Q K
Sbjct: 70  HLLSTPVPEGRQLNQPRAMIMAPTRELAIQIAKDATLLAKHTGLKVGIVYGGESYDVQRK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+LI T GRI+D+  +G + ++ I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLDKGVDILIGTTGRIIDYVRQGIINLSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +  L    + T  ++     +       E    +   +T ++     +     +   L  
Sbjct: 190 KSRLNMLFSATLSMKVQELAYDH-MNEPEKVVIAPNEKTSKNIKEEIFYPSMDEKMRLLL 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +D  +  I+F N K +  N+   LE  G  V  + G++ Q+ R++IL  F EG + 
Sbjct: 249 SLIEEDWPEKAIVFSNTKHSCENVWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTEGKLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG+ G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGVSVSFACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            AIE+ I   +   N D   L   L+ I      H RK+N  PQ+      R +  +  +
Sbjct: 369 PAIEEYITHSIPVTNYDSEGL---LDDIPAPIRVH-RKHNNRPQQGRNNSGRPQGRNGNR 424

Query: 418 S 418
           +
Sbjct: 425 A 425


>gi|325087574|gb|EGC40884.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus H88]
          Length = 485

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 141/427 (33%), Positives = 233/427 (54%), Gaps = 12/427 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 60  SFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQ 119

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    LIL PTRELA Q+++ FE  G   ++  A+++GG+   +Q   L +
Sbjct: 120 AL---MNKPQSLFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISLGK 176

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +    N     + N++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 177 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRT 236

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L NP R+ +++  +  +T+     +      K   +    L 
Sbjct: 237 YLFSATMSSKVESLQRASLSNPLRVSISS--NKYQTVATLLQSYLFIPHKYKDVYLVYLL 294

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ I+F         L   L   GF    +HG + Q SR+  LS F+  +  ++V
Sbjct: 295 NEYAGQSAIVFTRTVNETQRLAILLRTLGFGSIPLHGQLSQSSRLGALSKFRSRSRDILV 354

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V NFD+P+ ++ YIHR+GRT RAG+ G AF++V + DI+    I
Sbjct: 355 ATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVWLRI 414

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  + KK+D    +   +    +++  AQ +   +   +       ++R    ++ K   
Sbjct: 415 ENALGKKLDEYKVEKEEVMVLSDRVGEAQRHAITEMKDL------HEKRGSRGATLKGRR 468

Query: 421 PLKESEK 427
           P K +++
Sbjct: 469 PAKGAKR 475


>gi|24372534|ref|NP_716576.1| ATP-dependent RNA helicase SrmB [Shewanella oneidensis MR-1]
 gi|24346546|gb|AAN54021.1|AE015540_1 ATP-dependent RNA helicase SrmB [Shewanella oneidensis MR-1]
          Length = 420

 Score =  161 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 213/388 (54%), Gaps = 4/388 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P ++ ++   G++ PT IQ +T+P  L++ D+   A TGTGKTASF+LP L
Sbjct: 1   MQFEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPAL 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L     R      + IL PTRELA+Q+         +  L +A++ GG+P+  Q + L
Sbjct: 61  QHLIDFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   D+L+ TPGR++++ ++GK    +++IL+IDEADRMLDMGF   ++ I       +Q
Sbjct: 121 KGNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT+ +    +          IE++  +   E  +       A        L   L
Sbjct: 181 NMLFSATL-EGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKDHKFALLCHL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+ +K  I+F   +  V +L   L + G     + G+++Q+ R + LS F +G + ++
Sbjct: 240 LKQEDVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI D+ HV NFD+P  A+ YIHRIGRTGRAG  G A +L    D++ +  
Sbjct: 300 LATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGK 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
           IE+ IE+ +      +  L P  ++  +
Sbjct: 360 IERYIEQPLKR--RIIEELRPKHKEARV 385


>gi|163749401|ref|ZP_02156649.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161330810|gb|EDQ01737.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 430

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 149/426 (34%), Positives = 220/426 (51%), Gaps = 11/426 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA L L+P ++ A+ + GY + T +Q + IP+ L   D+   A+TGTGKTASF LP+L
Sbjct: 1   MKFAALDLNPLLIDAIDECGYQQLTQVQSEVIPVALSGADLMACAETGTGKTASFALPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K        R LIL PTRELA QVA N  +YG+  +L    + GG     Q K L 
Sbjct: 61  ERLLKEEQEYPCLRGLILTPTRELAIQVAANITRYGQFTSLKTLAVYGGANMNPQRKALN 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGR+ D   +  L ++++  L+IDEADRMLDMGF+  I+ + SLV     T
Sbjct: 121 AGVDILVATPGRLFDFVGQHGLNLSDVTSLIIDEADRMLDMGFVRDIERVKSLVASQHVT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSAT +D+++       +           +   +        Y    ++ A L   L 
Sbjct: 181 HFFSATYSDQVKL----LAEKMLISPQWINVAQTRSAASVEQEVYLVDKRRKAELLSELI 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  ++F   K++  +L   L   G      HG+  Q +R + L  FK G +++MV
Sbjct: 237 GRNNWQQVLVFATTKESAEHLNSELSLDGIKCGVFHGDRTQGARNRTLEEFKAGKLRVMV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V N ++P  AE+YIHRIGRTGRAG  G+A + V   D + +D I
Sbjct: 297 ATDVAARGIDIQALPLVINLELPYGAEDYIHRIGRTGRAGLTGRAISFVCPSDEEMLDEI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LIE K+  +      L  PL           R+   +      FDRRK   +++    
Sbjct: 357 ESLIELKLPRIVLPGYELGAPL-------PARYRETQDVTTTKKKFDRRKGKPANKHKGK 409

Query: 421 PLKESE 426
           P   ++
Sbjct: 410 PSSRAD 415


>gi|74656036|sp|Q58Z64|DHH1_CRYNV RecName: Full=ATP-dependent RNA helicase VAD1; AltName:
           Full=Virulence-associated DEAD box protein 1
 gi|54873506|gb|AAV41010.1| virulence associated DEAD box protein 1 [Cryptococcus neoformans
           var. grubii]
 gi|55982655|gb|AAV69745.1| virulence-associated DEAD Box protein [Cryptococcus neoformans var.
           grubii]
          Length = 616

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 186/377 (49%), Gaps = 8/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL  +++  +  AG+ +P+PIQ + IP+ L   D+   A+ GTGKTASF++P L  
Sbjct: 38  FEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNR 97

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLER 121
           +      +   + LIL PTRELA Q +   +  G +     V +  GG        +L++
Sbjct: 98  INTS---LSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQ 154

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD  ++G   +N   I V+DEAD++L   F+P I+   +L P  RQ +
Sbjct: 155 PVHILVGTPGRILDLGSKGIAGLNKCGIFVMDEADKLLSEDFMPVIEQTLALCPQERQVM 214

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++    F                 T++            +       L S
Sbjct: 215 LFSATFPWTVKE----FKDQHMVQPYEINLMDELTLKGVTQYYAYVEESQKVHCLNTLFS 270

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S    H  + Q  R ++  +F+ G  + +V 
Sbjct: 271 KLQINQSIIFCNSTNRVELLAKKVTELGYSCFYSHAKMQQAHRNRVFHDFRNGMTRNLVC 330

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE+Y+HRIGR+GR G  G A +L+  ED  ++  IE
Sbjct: 331 SDLLTRGIDIQAVNVVINFDFPRTAESYLHRIGRSGRFGHLGLAISLLTLEDRHNLYRIE 390

Query: 362 KLIEKKVDWLNGDLSSL 378
             +  ++  +   +  +
Sbjct: 391 SELGTEIAPIPAVIDPV 407


>gi|320589963|gb|EFX02419.1| RNA helicase [Grosmannia clavigera kw1407]
          Length = 537

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 130/382 (34%), Positives = 212/382 (55%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 118 TFDEAGFPRYVIDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPSIV 177

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 178 HINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGPQIRDL 237

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 238 SRGVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKILSQIRPDRQ 297

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ-- 237
           TL++SAT   E++ ++ +FL +  ++ + +   +A       V   ++  K+  +L+   
Sbjct: 298 TLMWSATWPKEVRNLAADFLTDFIQVNIGSLDLSANHRITQIVEVVSEGDKRDRMLKHLE 357

Query: 238 -LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            ++  ++     +IF   K+   ++   L + G+   +IHG+  Q  R  +L  FK G  
Sbjct: 358 KVMDDKEKENKVLIFTGTKRVADDITRLLRQDGWPALSIHGDKQQNERDWVLDQFKTGKS 417

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +MVA+D+A+RG+D+ ++ HV N+D PN +E+YIHRIGRTGRAG +G A TL   ++ K 
Sbjct: 418 PIMVATDVASRGIDVRNITHVINYDYPNNSEDYIHRIGRTGRAGANGTAITLFTTDNAKQ 477

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
              +  ++++    ++  L+ +
Sbjct: 478 ARDLVSVLQEAKQQIDPRLAEM 499


>gi|227485114|ref|ZP_03915430.1| possible ATP-dependent RNA helicase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236947|gb|EEI86962.1| possible ATP-dependent RNA helicase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 550

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 133/417 (31%), Positives = 226/417 (54%), Gaps = 16/417 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +L +S + + A+ D G+  P+PIQ +TIP +L   DV G AQTGTGKTA+F +P++
Sbjct: 15  VEFKELYISEETLRAIADMGFKSPSPIQEETIPPLLDGKDVIGQAQTGTGKTAAFAIPII 74

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +E       +      E   ++A ++ +  +    +  + +  + GG     Q K L+
Sbjct: 75  EKIEANGLTQALVLCPTRELCIQVAKEIGNLAK---YHTGIKILSVYGGTQIVKQIKALK 131

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G ++++ TPGR++D   R  L ++N++I+V+DEAD M DMGF   ++ I       RQT
Sbjct: 132 KGVEIVVGTPGRLMDLMRRRVLKLDNLKIVVLDEADEMFDMGFRDDMKFILDATNDDRQT 191

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM  E+ + S+ + +NP  I++     T   I+  F+       ++         
Sbjct: 192 CFFSATMGKEISEFSKIYQKNPVTIKIKAKELTVNKIDQHFIKLKEADKEETLTRLL--- 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  IIFCN K+ V  L  SL K+ + V  +HG++ Q  R  ++  F+  TI ++V
Sbjct: 249 EINKPRLAIIFCNTKRKVDKLVESLSKKSYLVDGLHGDLKQTQRDIVMKKFRNNTIDILV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV  V N+D+P   E Y+HRIGRT RAGR G +++L++  D + + AI
Sbjct: 309 ATDVAARGLDVDDVDMVINYDLPQLDEYYVHRIGRTARAGRSGLSYSLISGRDNERLKAI 368

Query: 361 EKLIEKKVD--------WLNGDLSS--LNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           EK  +  +          ++ +L +  ++  +EK++        K+  I     G+D
Sbjct: 369 EKYTKATIKQAQIPSLVQMDRNLETGVIDDIIEKLENYTGVEREKSILIRLMEKGYD 425


>gi|163748720|ref|ZP_02155973.1| ATP-dependent RNA helicase [Shewanella benthica KT99]
 gi|161331830|gb|EDQ02634.1| ATP-dependent RNA helicase [Shewanella benthica KT99]
          Length = 438

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 136/404 (33%), Positives = 219/404 (54%), Gaps = 9/404 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  L   +  A+ ++G+   TPIQ  ++P++LQ+ D+ G AQTGTGKT +F++    
Sbjct: 10  KFADFSLHEGIKTALNESGFEFCTPIQAASLPILLQKKDIAGQAQTGTGKTLAFLVATFE 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      ++  PR +I+ PTRELA Q+A +     K+  L V ++ GG  +E Q K
Sbjct: 70  HLLSSPIPEGRQLNQPRAMIMAPTRELAIQIARDATLLAKHTGLKVGIVYGGESYEVQRK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+LI T GRI+D+  +G + ++ I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLDKGIDILIGTTGRIIDYVRQGIINLSAIQVVVLDEADRMFDLGFIKDIRFLFRRMPDA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +  L    + T  ++     +       E    +   +T ++     +     +   L  
Sbjct: 190 KLRLNMLFSATLSMKVQELAYDH-MNEPEKVVIAPNEKTSKNIKEEIFYPSMDEKMRLLL 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +D  +  IIF N K +  N+   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 SLIEEDWPEKAIIFSNTKHSCENVWSWLSGDGHRVGLLTGDVPQKKRIRILEQFTTGELD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGR G+ G + +   +E   ++
Sbjct: 309 FLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRVGKKGVSISFACEEYAMNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            AIE+ I   +   N D ++L   LE I      H RK+N  PQ
Sbjct: 369 PAIEEFIAHSIPVSNYDNTAL---LEDIPAPIRVH-RKHNSRPQ 408


>gi|149908489|ref|ZP_01897151.1| ATP-dependent RNA helicase [Moritella sp. PE36]
 gi|149808323|gb|EDM68260.1| ATP-dependent RNA helicase [Moritella sp. PE36]
          Length = 432

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 133/429 (31%), Positives = 212/429 (49%), Gaps = 10/429 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+  GL+  V+  +  +G+   TPIQ  ++P  ++  DV G AQTGTGKT +F+  +  
Sbjct: 10  KFSQFGLNADVLSGLEASGFEYCTPIQALSLPFAIKGKDVAGQAQTGTGKTIAFLAAIFH 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                          PR +IL PTRELA Q+  +     K   L + L+ GG  ++ Q  
Sbjct: 70  HLLKKPVAEDRPKNKPRAIILAPTRELAIQIHKDALPIAKATGLKMGLVYGGESYDIQRD 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +G D++I T GRI+D   +  + ++ +E LV+DEADRMLD GFI  I+ +   +P  
Sbjct: 130 NLAKGVDIIIGTVGRIIDFEKQKAMDLSGVEALVLDEADRMLDQGFIKDIRYLMRKMPEP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +Q L    + T     + E   Q+    E  T  +   T        +   +     L Q
Sbjct: 190 KQRLNLLFSAT-FTWDIRELAYQHMNEPEEVTVPAEKVTGSSITQELFHPSNDDKMALLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++  +  I+F N K     +   L      V  + G+I Q+ R  IL  F +G + 
Sbjct: 249 TLIEEEWPERAIVFANTKHKCEEIWGHLAADKHRVGLLTGDIPQKKRNSILEQFTQGKLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+   +Y+HRIGRTGRAG  G + +   ++ I ++
Sbjct: 309 ILVATDVAARGLHIPAVSHVFNYDLPDNCGDYVHRIGRTGRAGAEGHSISFACEKYIYNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            AIE+ IE  +   + D S+L       D+ +  H ++  P   +S      +   + Q+
Sbjct: 369 PAIEEFIEGTIPVCHYDKSALL-----TDLPRPIHTKRARPGNSRSMSDRNNRTRRTGQR 423

Query: 418 SHIPLKESE 426
            H    ++ 
Sbjct: 424 QHNTHNKTH 432


>gi|167375363|ref|XP_001733609.1| ATP-dependent rRNA helicase RRP3 [Entamoeba dispar SAW760]
 gi|165905196|gb|EDR30262.1| ATP-dependent rRNA helicase RRP3, putative [Entamoeba dispar
           SAW760]
          Length = 432

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 143/393 (36%), Positives = 215/393 (54%), Gaps = 6/393 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL P+V+  V   GY KPT IQ  +IP+ LQ+ D+ GIAQTG+GKTASF+LPM+ 
Sbjct: 10  TFKDLGLIPEVLKVVEYLGYKKPTKIQENSIPVALQKKDIIGIAQTGSGKTASFLLPMIQ 69

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV-ALLIGGIPFEAQNKKLE 120
            L   + + R    +I+EPTRELAAQV +  ++ GK     +  LL+GG+    Q+ +L 
Sbjct: 70  HLLNVKEKNRAFYCIIIEPTRELAAQVVEVLDEIGKALPGLMSCLLVGGMDVMKQSIQLA 129

Query: 121 RGADVLICTPGRILDHFNRGK---LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +   V++ TPGRI+ H    K     +  ++ LVIDEAD++L+M F   I  +   +P  
Sbjct: 130 KRPHVIVGTPGRIVYHIKNTKGVEESIQKVKFLVIDEADKLLEMDFANEIDYLIEKLPSQ 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R T+LFSATM+ +++K+    L +P +I+                       K       
Sbjct: 190 RTTMLFSATMSTKVEKLQRASLTHPVKIKEEEQKYQTVDTLRQEYCFIPF--KYRDGYLL 247

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   K+ IIF  +      L   L + G++   +HG + Q+ R+  L  FK G   
Sbjct: 248 SILKETEGKSIIIFTMKCSGCTKLVMMLRQLGYAAIPLHGKMSQQKRLIALEKFKSGKRG 307

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A+RGLDIP+V  V N+D P   ++YIHR+GRT RAG+ G A TLV +  I+  
Sbjct: 308 ILVATDVASRGLDIPNVDIVINYDCPLEPKDYIHRVGRTARAGKSGYAITLVTQYSIELY 367

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
             IE +IEKK++    +        +K + A  
Sbjct: 368 QRIETMIEKKLNEYKVNEKEAIAYSQKANDAMR 400


>gi|26991217|ref|NP_746642.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440]
 gi|24986267|gb|AAN70106.1|AE016650_5 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
           KT2440]
          Length = 440

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 128/368 (34%), Positives = 195/368 (52%), Gaps = 1/368 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L          R LIL PTRELA Q     + + +   +   L+ GG  F+ Q   L + 
Sbjct: 62  LVDLSGPRVEIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRKV 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+L+  N G L ++++++L++DEADRMLDMGF   ++ +        QTLL
Sbjct: 122 PDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQTLL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT T                  +   S +            A + +    + Q L + 
Sbjct: 182 FSAT-TGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLLAN 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T    IIF N +     +   L  +      +HG  DQ+ R   +  FK+G+ +++VA+
Sbjct: 241 ETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVAT 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  +  V NFD+P   + Y+HR+GRTGRAG  G A +L+   D   + +IE+
Sbjct: 301 DVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSIER 360

Query: 363 LIEKKVDW 370
            ++++ + 
Sbjct: 361 YLKQQFER 368


>gi|148546618|ref|YP_001266720.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida F1]
 gi|148510676|gb|ABQ77536.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 453

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 128/368 (34%), Positives = 195/368 (52%), Gaps = 1/368 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 15  FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L          R LIL PTRELA Q     + + +   +   L+ GG  F+ Q   L + 
Sbjct: 75  LVDLSGPRVEIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRKV 134

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+L+  N G L ++++++L++DEADRMLDMGF   ++ +        QTLL
Sbjct: 135 PDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQTLL 194

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT T                  +   S +            A + +    + Q L + 
Sbjct: 195 FSAT-TGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLLAN 253

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T    IIF N +     +   L  +      +HG  DQ+ R   +  FK+G+ +++VA+
Sbjct: 254 ETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVAT 313

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  +  V NFD+P   + Y+HR+GRTGRAG  G A +L+   D   + +IE+
Sbjct: 314 DVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSIER 373

Query: 363 LIEKKVDW 370
            ++++ + 
Sbjct: 374 YLKQQFER 381


>gi|255719332|ref|XP_002555946.1| KLTH0H01562p [Lachancea thermotolerans]
 gi|238941912|emb|CAR30084.1| KLTH0H01562p [Lachancea thermotolerans]
          Length = 491

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 116/376 (30%), Positives = 184/376 (48%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L  +++  + +AG+ KP+PIQ + IP+ +   DV   A+ GTGKTA+FV+P L 
Sbjct: 30  TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPIAIAGRDVLARAKNGTGKTAAFVVPTLE 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +V   + LI+ PTRELA Q +      GK+  ++  +  GG        +L  
Sbjct: 90  KVKP---KVNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNE 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD  +R    ++   + V+DEAD+ML   F   I+ I + +P   Q+L
Sbjct: 147 PVHILVGTPGRVLDLASRKVADLSECPLFVMDEADKMLSRDFKAIIEQILTFLPPVHQSL 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++    F+                T++           ++       L S
Sbjct: 207 LFSATFPLTVKE----FMVKHLHKPYEINLMDELTLKGITQYYAFVEERQKLHCLNTLFS 262

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   +   G+S    H  + Q  R K+   F++G ++ +V 
Sbjct: 263 KLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQSERNKVFHEFRQGKVRTLVC 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+   D  ++  IE
Sbjct: 323 SDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIE 382

Query: 362 KLIEKKVDWLNGDLSS 377
           + +  ++  +   +  
Sbjct: 383 QELGTEIAAIPAQIDK 398


>gi|306783973|ref|ZP_07422295.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu003]
 gi|308331209|gb|EFP20060.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu003]
          Length = 563

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 140/370 (37%), Positives = 212/370 (57%), Gaps = 9/370 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL + P+V+ A+ D GY  PT IQ  TIP ++   DV G+AQTGTGKTA+F +PML+
Sbjct: 14  TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-E 120
            ++      ++P+ L+L PTRELA QVA+ F +YG   +    L I G    A       
Sbjct: 74  KIDIT---SKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLR 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  R  L ++ ++ LV+DEAD ML MGF   ++ I S  P  +Q 
Sbjct: 131 RGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQV 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++K+S  +L +P  +     ++  E I   ++    +      +L+    
Sbjct: 191 ALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVDENISQSYIQVARKMDALTRVLEVEPF 250

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K+    +   L  +GFS  AI G++ Q  R + ++  ++G I ++V
Sbjct: 251 EAM-----IVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  ++  + AI
Sbjct: 306 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAI 365

Query: 361 EKLIEKKVDW 370
           EK   + +  
Sbjct: 366 EKATRQTLTE 375


>gi|195376137|ref|XP_002046853.1| GJ12262 [Drosophila virilis]
 gi|194154011|gb|EDW69195.1| GJ12262 [Drosophila virilis]
          Length = 778

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 133/381 (34%), Positives = 212/381 (55%), Gaps = 3/381 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F + G    V+  +   G+ KPT IQ + +P+ L   D+  +AQTG+GKT ++VLP +
Sbjct: 142 IEFEEGGFPDYVMNEIRKQGFTKPTAIQAQGMPIALSGRDLVAVAQTGSGKTLAYVLPAV 201

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA Q+     ++G N  +    + GG P   Q + 
Sbjct: 202 VHINNQPRLERGDGPIALVLAPTRELAQQIQQVASEFGSNTQVRNTCIFGGAPKGQQARD 261

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 262 LERGVEIVIATPGRLIDFLERGTTTLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDR 321

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQ 237
           Q L++SAT   E+++++E FL N  ++ + + S +A       V    +  K    +   
Sbjct: 322 QVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDESEKIVKLIQLL 381

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              S +     IIF   KK V  +  ++ +QG+  CAIHG+  Q+ R  +LS+F+ G   
Sbjct: 382 TQISGENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHS 441

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    +    
Sbjct: 442 ILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTNSNANKA 501

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
           + + +++ +    +N  L ++
Sbjct: 502 NDLIQVLREANQTINPKLMNM 522


>gi|316979810|gb|EFV62545.1| ATP-dependent RNA helicase DDX42 [Trichinella spiralis]
          Length = 741

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 130/379 (34%), Positives = 210/379 (55%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA  G   K++  +    + +PTPIQ + IP+V+   D+ GIA+TG+GKTA+++ P + 
Sbjct: 204 SFAHFGFDEKLMSLIRKYEFSQPTPIQAQGIPVVMSGRDIIGIAKTGSGKTAAYLWPAIY 263

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  LI+ PTRELA QV +  +KYGK +++ V    GG     Q+K L
Sbjct: 264 HIISQRHLDEKEGPICLIVVPTRELAIQVYNEAKKYGKYFDIRVVCAYGGGSKWEQSKAL 323

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA+V++CTPGRI+D           +   V+DEADRM D+GF   +++I   +   RQ
Sbjct: 324 AEGAEVVVCTPGRIIDLIKAKATNFERVTYFVLDEADRMFDLGFEAQVRSIADHIRPDRQ 383

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT   ++++++ + L NP ++           I+       +  +K    L   L
Sbjct: 384 CLMFSATFKKKIERLARDVLTNPVKVIQGEVGEANADIQQIVEYFASPPTKW-TWLLGNL 442

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               +M   +IF +QK +V  +  +L+ + F VC +HG++ Q  R +++  FK+  + ++
Sbjct: 443 VKFCSMGKVLIFISQKVHVEEIAENLKAKDFRVCILHGDMFQHERNQVIHAFKKDDVPIL 502

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDIP +  V N+DV    + ++HRIGRTGRAG  G A+TLV  +D +    
Sbjct: 503 IATDVAARGLDIPTIKTVINYDVAKDLDTHVHRIGRTGRAGEKGFAYTLVTDKDKEFAGH 562

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K +E     +   L +L
Sbjct: 563 LVKSLESVNQEVPTALLNL 581


>gi|164425692|ref|XP_960011.2| hypothetical protein NCU06149 [Neurospora crassa OR74A]
 gi|161789041|sp|Q7S5D9|DHH1_NEUCR RecName: Full=ATP-dependent RNA helicase dhh-1
 gi|157071024|gb|EAA30775.2| hypothetical protein NCU06149 [Neurospora crassa OR74A]
          Length = 505

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 114/372 (30%), Positives = 182/372 (48%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +D+ D      ++  + +AG+ KP+PIQ + IP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 45  LDWEDFIHDRDLLMGIFEAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPAL 104

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +V   + LIL PTRELA Q +   +  GK+  + V +  GG        +L+
Sbjct: 105 NKI---NPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIVRLQ 161

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +    ++   + ++DEAD++L   F P I+ +    P  RQ 
Sbjct: 162 DPVHIVVGTPGRILDLAGKQVADLSECPMFIMDEADKLLSQEFTPVIEQLLQFHPKDRQV 221

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F                 T+            K+       L 
Sbjct: 222 MLFSATFPLSVKD----FSDKNMTSPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 277

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q++R ++  +F+ G  + +V
Sbjct: 278 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMAQQARNRVFHDFRNGVCRNLV 337

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 338 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNI 397

Query: 361 EKLIEKKVDWLN 372
           E+ +  ++  + 
Sbjct: 398 ERDLGTEIQPIP 409


>gi|156546663|ref|XP_001603634.1| PREDICTED: similar to ENSANGP00000016791 [Nasonia vitripennis]
          Length = 1035

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 140/442 (31%), Positives = 223/442 (50%), Gaps = 15/442 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+S K +  +   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 371 SWAQCGVSKKELDVLRKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 430

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  LI+ PTREL  Q+  + +K+ K+  L+   + GG     Q  +L
Sbjct: 431 HILDQPPLADGDGPIALIMTPTRELCMQIGKDSKKFTKSLGLSHVCVYGGTGISEQIAEL 490

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     N     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 491 KRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIMENVRP 550

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT   +++ ++   L  P  ++V   S   +               K   L 
Sbjct: 551 DRQTVLFSATFPRQMEALARRILTKPVEVQVGGRSVVCKD--VEQHVVVLDDDLKFRKLL 608

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L       + IIF ++++N   L   L K   S  ++HG IDQ  R   + +FK G +
Sbjct: 609 EILGHFQDKGSAIIFVDKQENADTLLKDLMKASHSCMSLHGGIDQCDRDSTIMDFKAGRV 668

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  +  ++
Sbjct: 669 KLLVATSVAARGLDVKSLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITPDQERY 728

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I +  E     L G    +  PL ++     N    +        GF  +   +   
Sbjct: 729 SGDIVRAFE-----LAG--VPVPEPLRQLWEGYKNRQEADGKKVHTGGGFSGKGYKFDES 781

Query: 417 KSHIPLKESEKISKLQQDIQEN 438
           ++ +   E +K  K    +Q++
Sbjct: 782 EAAL-ANEKKKFQKAALGLQDS 802


>gi|319425286|gb|ADV53360.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 419

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 136/387 (35%), Positives = 208/387 (53%), Gaps = 7/387 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P ++ ++   G+  PT IQ +TIP  L++ D+   A TGTGKTASF+LP L
Sbjct: 1   MQFEDFHLDPSLLESLKAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPTL 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L     R      + IL PTRELA+Q+         +  L +A++ GG+P+  Q + L
Sbjct: 61  QHLIDFPRRFSGQARILILTPTRELASQIHRYACHLATDQGLDIAIITGGVPYAPQEEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+L+ TPGR++++ ++GK     ++IL+IDEADRMLDMGF   +Q I       +Q
Sbjct: 121 AGNVDILVATPGRLMEYLDKGKFSAEEVDILIIDEADRMLDMGFSSVVQAIALEAQGRKQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT+ +               IE++  +  +E  +       A   +    L   L
Sbjct: 181 NMLFSATL-EGGGVQRFAREVLKDPIEIDVDAPRSEKAKIHQWIHLADDKEHKFALLCHL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+ +K  I+F   +  V +L   L K G     + G+++Q+ R + LS F +G + ++
Sbjct: 240 LRQEDVKRTIVFVKTRDIVTSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI D+ HV NFD+P  A+ YIHRIGRTGRAG  G A +L    D++ +  
Sbjct: 300 LATDVAARGIDIDDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGK 359

Query: 360 IEKLIEKK-----VDWLNGDLSSLNPP 381
           IE+ IE+      ++ L         P
Sbjct: 360 IERYIEQPLKRRVIEELRPKNKEARTP 386


>gi|113954719|ref|YP_730508.1| DNA and RNA helicase [Synechococcus sp. CC9311]
 gi|113882070|gb|ABI47028.1| DNA and RNA helicase [Synechococcus sp. CC9311]
          Length = 426

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 152/367 (41%), Positives = 217/367 (59%), Gaps = 4/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  ++ A+ + GY  P+PIQ++ IP V+   DV   AQTGTGKTA F LPML  
Sbjct: 17  FDSLGLSQPLLKALQEKGYTAPSPIQLQAIPAVISGRDVMAAAQTGTGKTAGFTLPMLER 76

Query: 63  LEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G    R   R L+L PTRELAAQV  +  +Y K   LT  ++ GG+    Q ++L++
Sbjct: 77  LNHGARPGRLQIRALVLTPTRELAAQVLASVREYSKYLQLTSDVVFGGVKINPQIQRLQK 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVL+ TPGR+LD   +G +  + +E LV+DEADRMLDMGFI  I+ + S +P  RQTL
Sbjct: 137 GVDVLVATPGRLLDLLQQGAVRFDRVEFLVLDEADRMLDMGFIHDIRRVISRLPDRRQTL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT +  ++K++   L +P +I+V   + T  ++E                       
Sbjct: 197 MFSATFSAPIRKLATGLLDHPVQIQVAPANQTVRSVEQVVHPCDMARKVDLLSHL---IR 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F   K     +   L +QG    AIHGN  Q +R + L  FK+G+++++VA
Sbjct: 254 SGEWLQVLVFSRTKHGANRVVDRLSQQGLLAAAIHGNKSQGARTRALQGFKDGSVRVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI  + HV N D+PN AE+Y+HRIGRTGRAG  G A +LVA E+   + AIE
Sbjct: 314 TDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRTGRAGETGHAISLVAAEEALLLKAIE 373

Query: 362 KLIEKKV 368
           +L  + +
Sbjct: 374 RLTGESL 380


>gi|19113116|ref|NP_596324.1| ATP-dependent RNA helicase Ste13 [Schizosaccharomyces pombe 972h-]
 gi|1174456|sp|Q09181|DHH1_SCHPO RecName: Full=Putative ATP-dependent RNA helicase ste13
 gi|703066|dbj|BAA06178.1| RNA helicase [Schizosaccharomyces pombe]
 gi|4176526|emb|CAA22882.1| ATP-dependent RNA helicase Ste13 [Schizosaccharomyces pombe]
          Length = 485

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 117/375 (31%), Positives = 182/375 (48%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + +AG+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+FV+P   
Sbjct: 45  EFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIP--- 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            LEK   +    +TLIL PTRELA Q +   +  GK+ N+ V +  GG        +L  
Sbjct: 102 SLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLND 161

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LD   +G    +     V+DEAD++L   F P I+ + S  P  RQ  
Sbjct: 162 TVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQIS 221

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    ++     F+                T+             +       L S
Sbjct: 222 LYSATFPLIVKN----FMDKHLNKPYEINLMDELTLRGVTQYYAFVDESQKVHCLNTLFS 277

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S    H  + Q  R ++  NF+ G  + +V 
Sbjct: 278 KLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVC 337

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A + ++  D  ++  IE
Sbjct: 338 SDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWADRFNLYRIE 397

Query: 362 KLIEKKVDWLNGDLS 376
             +  ++  +   + 
Sbjct: 398 NELGTEIQPIPPSID 412


>gi|332520631|ref|ZP_08397093.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332043984|gb|EGI80179.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 451

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 149/446 (33%), Positives = 229/446 (51%), Gaps = 11/446 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L+  +  A+ D GY  PTPIQ +   +V    D+ GIAQTGTGKT +++LP+L
Sbjct: 1   MTFRDLNLNTPLYNALDDLGYTTPTPIQAEAFNVVASGKDMVGIAQTGTGKTFAYMLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +   PR L+L PTREL  QV +  EK  K  N  V  + GG     Q + + 
Sbjct: 61  RNLPFS--KQENPRVLVLVPTRELVVQVVEEIEKLSKYINNRVLGVYGGTNINTQKQAIA 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+ D      L + +I+ L+IDE D MLD+GF   + NI  L+P  RQ 
Sbjct: 119 QGIDILVATPGRLYDLALSRVLQLKSIQKLIIDEVDVMLDLGFRHQLINIFDLLPTRRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSATMT ++  +  +F ++P+++ + T  +  E I+         Y+K   L   L  
Sbjct: 179 IMFSATMTKDVDDLIVDFFKSPEKVSIATSGTPLENIKQTRYKAPNFYTKLNLLKHLLQD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   K  I    +K          E+    +C IH N  Q  R++ +  F+EG  +++V
Sbjct: 239 EETYNKVLIFVAYKKMADRLFEALDEEYNEELCVIHSNKTQNYRLRSIEQFREGINRILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLDI +V HV NFD P   ENY+HRIGRTGRA R G A     +++ + I+ I
Sbjct: 299 ATDVMARGLDIDNVSHVINFDTPEYPENYMHRIGRTGRAEREGHALVFTTEKEQQAIEDI 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK------STGFDRRKKNYS 414
           E L++  ++ +     ++    E I+  +     +NNP  ++         F  + +  S
Sbjct: 359 EALMDMTIN-VEEIPDTVEISTELIEEERPQIKERNNPNKRRKDEDAPGPAFHEKSEKNS 417

Query: 415 SQK--SHIPLKESEKISKLQQDIQEN 438
            +        K + K  K +    +N
Sbjct: 418 KENLGGSYKFKIAAKYKKPKTRGDKN 443


>gi|12381896|dbj|BAB21258.1| eukaryotic initiation factor 4A [Oryza sativa]
 gi|12381898|dbj|BAB21259.1| eukaryotic initiation factor 4A [Oryza sativa]
          Length = 414

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 195/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 42  SFDDMGLQENLLRGIYAYGFEKPSAIQKRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G       ++L+L PTRELA Q+       G    + V   +GG     Q + L  
Sbjct: 102 QLDYGLVE---CQSLVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREQQRILAS 158

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 159 GVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 218

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 219 VFSATMPPEGLEITLRFMDKPVRILVKRDELTREGIKQFYVNVEKEDWKLDTLCDL--YD 276

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N  + V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 277 SLAITQSVIFVNTLRMVDWLTDKMRSRDHTVSATHGDMDQITRDIIMREFRSGSSRVLIT 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+D+  V  V N+D+  + ENY+HRIGR+GR GR G A   V ++D + +  I+
Sbjct: 337 TDLLDRGIDVQQVSLVINYDLSTQTENYLHRIGRSGRFGRKGVAIIFVTRDDERMLFDIQ 396

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ L  +++ L
Sbjct: 397 RFYNGTIEELPANVADL 413


>gi|195432312|ref|XP_002064167.1| GK20023 [Drosophila willistoni]
 gi|194160252|gb|EDW75153.1| GK20023 [Drosophila willistoni]
          Length = 1234

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 138/447 (30%), Positives = 231/447 (51%), Gaps = 12/447 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 530 TWAQCGVSKKEMDVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 589

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +              +I+ PTREL  Q+  +  ++ K+  L    + GG     Q  +L
Sbjct: 590 HILDQPQLEDGDGAIAIIMAPTRELCMQIGKDIRRFSKSLGLCPVCVYGGTGISEQIAEL 649

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 650 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRP 709

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   L+ P  + V   S   +       A       K   L 
Sbjct: 710 DRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKD--VEQHAVILNDDAKFFKLL 767

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +FK G +
Sbjct: 768 ELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKV 827

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  E  ++
Sbjct: 828 RLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRY 887

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-----KK 411
              I + ++     +  +L++L    +    A+            K   FD +     K+
Sbjct: 888 AGDIVRALDLSGTPVPAELTTLWNDYKSAQEAEGKTVHTGGGFSGKGFKFDEQEFNAVKE 947

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQEN 438
           +   QK+ + L +S+    ++QDI + 
Sbjct: 948 SKKLQKAALGLADSDDEEDIEQDIDQQ 974


>gi|148553067|ref|YP_001260649.1| DEAD/DEAH box helicase domain-containing protein [Sphingomonas
           wittichii RW1]
 gi|148498257|gb|ABQ66511.1| DEAD/DEAH box helicase domain protein [Sphingomonas wittichii RW1]
          Length = 448

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 210/453 (46%), Positives = 283/453 (62%), Gaps = 10/453 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADLGLS +++ AV +AGY +PTPIQ + IP VL   D+ GIAQTGTGKTASFVLPM+
Sbjct: 1   MSFADLGLSDELLRAVSEAGYSEPTPIQAQAIPPVLMMKDLIGIAQTGTGKTASFVLPMI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL  GR+R RMPR+LILEPTRELAAQVA+NFEKYGK + LT+ALLIGG+    Q   LE
Sbjct: 61  DILAHGRSRARMPRSLILEPTRELAAQVAENFEKYGKYHKLTMALLIGGVNMGDQVAALE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVLI TPGR++D F RGK+L+    +LVIDEADRMLDMGFIP I+ I + +P  RQT
Sbjct: 121 KGVDVLIATPGRLMDLFGRGKILLTGCSLLVIDEADRMLDMGFIPDIEEICTKLPAQRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++K+++ FL NPK+IEV+     A T      +     S+      + L 
Sbjct: 181 LLFSATMPAPIKKLADKFLSNPKQIEVSR---PASTNLAIDQSLVETSSRAKRETLRGLL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   +   IIF N+K  V +L  SL + GF    IHG+++Q  R++ L  FK G I ++V
Sbjct: 238 NGGDVSTAIIFSNRKTTVRDLAQSLGRYGFRAGQIHGDMEQPERLRELDRFKGGEINILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDI  V HV NFDVP   ++Y+HR+GRTGR G  G A TLV  ED + I+AI
Sbjct: 298 ASDVAARGLDIKGVSHVINFDVPWHPDDYVHRVGRTGRGGATGTAITLVTPEDAEAIEAI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EKL   K+       +    P   I+ A    A       ++    +++ +  + +++  
Sbjct: 358 EKLTGNKI-------ARRGKPAGAIEEAAPETAEPRREKRERGGRREKKAEVPAPREAKR 410

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFM 453
             ++       ++    +D    G+ G +P F+
Sbjct: 411 EERDRRPRRDDRRRDPIDDEPDDGWNGPVPGFL 443


>gi|196039972|ref|ZP_03107275.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|196029231|gb|EDX67835.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
          Length = 458

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 145/409 (35%), Positives = 232/409 (56%), Gaps = 14/409 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           EK +   +     +     P ++++D    N      P P+KS  + +R
Sbjct: 360 EKTLGAPIKREIIE----QPKIKRVD---ENGKPLPKPAPKKSGEYRQR 401


>gi|297745244|emb|CBI40324.3| unnamed protein product [Vitis vinifera]
          Length = 472

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 116/375 (30%), Positives = 195/375 (52%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 99  EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 158

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++      + + +IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 159 KIDQDN---NVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQ 215

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P I+ +   +P  RQ L
Sbjct: 216 PVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIHFMPLNRQIL 275

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++   + +LQ P  I          T++           ++       L S
Sbjct: 276 LFSATFPVTVKDFKDRYLQKPYII----NLMDELTLKGITQYYAFVEERQKVHCLNTLFS 331

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 332 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 391

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 392 TDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 451

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 452 QELGTEIKQIPPHID 466


>gi|225454138|ref|XP_002270379.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147785187|emb|CAN75439.1| hypothetical protein VITISV_000835 [Vitis vinifera]
          Length = 491

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 116/375 (30%), Positives = 195/375 (52%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 118 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 177

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++      + + +IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 178 KIDQDN---NVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQ 234

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P I+ +   +P  RQ L
Sbjct: 235 PVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIHFMPLNRQIL 294

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++   + +LQ P  I          T++           ++       L S
Sbjct: 295 LFSATFPVTVKDFKDRYLQKPYII----NLMDELTLKGITQYYAFVEERQKVHCLNTLFS 350

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 351 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 410

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 411 TDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 470

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 471 QELGTEIKQIPPHID 485


>gi|91228876|ref|ZP_01262779.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
 gi|91187564|gb|EAS73893.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
          Length = 419

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 156/421 (37%), Positives = 247/421 (58%), Gaps = 9/421 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++FADLG+  K++  + +   V PTP+Q K+IP VL   ++   AQTGTGKTA+F LP++
Sbjct: 3   VNFADLGIEQKLIETLGNLNIVTPTPVQEKSIPHVLAGKNLLAAAQTGTGKTAAFGLPII 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++ +     P+ LIL PTRELA QV DN  +Y     L +  + GG     Q +KLE
Sbjct: 63  QTVQQKKLNGT-PQALILVPTRELAQQVFDNLNQYSAETELRIVCVYGGTSIGVQKRKLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+LI TPGR+LDH   G + ++   +LV+DEADRMLDMGF P +Q I   +P  +Q 
Sbjct: 122 EGADILIATPGRLLDHLFNGNVNISKTGMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQI 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    ++ ++   +++P  +EV+  ++TAET+       Y    K+   L   L 
Sbjct: 182 LLFSATFEKRIKTIAYKLMESPVEVEVSPANTTAETV---TQMVYPVDKKRKRELLAYLI 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  ++F   K+    L   L+  G    +I+G+  Q +R + L  FK+G ++ ++
Sbjct: 239 GSRNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++   + AI
Sbjct: 299 ATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLQAI 358

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKID---IAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           E L+++++  +WL G   SL   +E        + + + +   +  K      R K+ SS
Sbjct: 359 ENLLDQRLPQEWLAGFEPSLVEEVEPEQNGGGRRRSRSSEKRKLKAKLAIHKNRGKSRSS 418

Query: 416 Q 416
           +
Sbjct: 419 R 419


>gi|89073869|ref|ZP_01160376.1| ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89050404|gb|EAR55905.1| ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 437

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 134/403 (33%), Positives = 208/403 (51%), Gaps = 10/403 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGL+P V+  + D G+   TPIQ   +P++L  HD+ G AQTGTGKT +F+     
Sbjct: 10  KFAELGLNPLVLKGLDDKGFHNCTPIQALALPVMLTGHDIAGQAQTGTGKTIAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +   PR +I+ PTRELA Q+ ++      +  L   L  GG P+E Q  
Sbjct: 70  HLLETAAPAHRKTNQPRAIIMAPTRELAIQIYNDASSLIASTGLKAGLAYGGEPYEKQKA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G D+LI T GRI+D + +  + + +I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLDEGVDILIGTCGRIIDFYKQRVIDLASIQVVVLDEADRMFDLGFIKDIRFLFRRMPAP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T   +     F       E        +T        +   +++   L Q
Sbjct: 190 NERLSLLFSATLSYRVKELAFEHMNS-PESVVVEPEQKTGHRIQEELFYPSNQEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++  +  IIF N K    ++   L   G  V  + G++ Q+ R +IL  F +G + 
Sbjct: 249 TLIEEEWPERAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVPQKKRERILDQFTKGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+ AE+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDAEDYVHRIGRTGRAGLSGHSISFACEEYAINL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKN 396
            AIE  IE  +     D    L  L  P+ ++        R+N
Sbjct: 369 TAIEAYIEHGIPQSKYDSEALLEDLPAPI-RLQRNPRQGGRRN 410


>gi|221487592|gb|EEE25824.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
          Length = 475

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 116/376 (30%), Positives = 185/376 (49%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF +  L  +++  + + G+ KP+PIQ  +IP+ L   ++   A+ GTGKTA+F +P+L 
Sbjct: 103 DFEEYFLRRELLMGIFEKGFEKPSPIQEASIPIALAGKNILARAKNGTGKTAAFSIPLLE 162

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             +      R  + LIL PTRELA Q +   +  GK+ N+   +  GG        +L  
Sbjct: 163 KCQTS---KRYIQGLILVPTRELALQTSAVVKAIGKHMNVQCMVSTGGTSLRDDIMRLYN 219

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL  TPGRILD  N+G   ++N  ++V+DEAD++L   F P ++ +   VP  RQ L
Sbjct: 220 PVHVLCGTPGRILDLANKGVADLSNCHMVVMDEADKLLSAEFQPIVEELIKFVPRERQIL 279

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           ++SAT    ++     F                 T++           ++       L S
Sbjct: 280 MYSATFPVTVKD----FKHKYLPDAHEINLMDELTLKGVTQYYAFVEERQKVHCLNTLFS 335

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 336 KLQINQAIIFCNSVTRVELLAKKITELGYSCFYIHARMMQSHRNRVFHDFRNGACRCLVS 395

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  L+  +D  ++  IE
Sbjct: 396 SDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINLITYDDRFNLYRIE 455

Query: 362 KLIEKKVDWLNGDLSS 377
             +  ++  +   +  
Sbjct: 456 SELGTEIQPIPSQIDE 471


>gi|237830431|ref|XP_002364513.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211962177|gb|EEA97372.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|221507386|gb|EEE32990.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 475

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 116/376 (30%), Positives = 185/376 (49%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF +  L  +++  + + G+ KP+PIQ  +IP+ L   ++   A+ GTGKTA+F +P+L 
Sbjct: 103 DFEEYFLRRELLMGIFEKGFEKPSPIQEASIPIALAGKNILARAKNGTGKTAAFSIPLLE 162

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             +      R  + LIL PTRELA Q +   +  GK+ N+   +  GG        +L  
Sbjct: 163 KCQTS---KRYIQGLILVPTRELALQTSAVVKAIGKHMNVQCMVSTGGTSLRDDIMRLYN 219

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL  TPGRILD  N+G   ++N  ++V+DEAD++L   F P ++ +   VP  RQ L
Sbjct: 220 PVHVLCGTPGRILDLANKGVADLSNCHMVVMDEADKLLSAEFQPIVEELIKFVPRERQIL 279

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           ++SAT    ++     F                 T++           ++       L S
Sbjct: 280 MYSATFPVTVKD----FKHKYLPDAHEINLMDELTLKGVTQYYAFVEERQKVHCLNTLFS 335

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 336 KLQINQAIIFCNSVTRVELLAKKITELGYSCFYIHARMMQSHRNRVFHDFRNGACRCLVS 395

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  L+  +D  ++  IE
Sbjct: 396 SDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINLITYDDRFNLYRIE 455

Query: 362 KLIEKKVDWLNGDLSS 377
             +  ++  +   +  
Sbjct: 456 SELGTEIQPIPSQIDE 471


>gi|332827587|gb|EGK00333.1| hypothetical protein HMPREF9455_03472 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 611

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 160/486 (32%), Positives = 251/486 (51%), Gaps = 46/486 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG++  +  A+ + GY  P P+Q + IP +L +  D+  +AQTGTGKTA+F LP+L
Sbjct: 3   TFEELGVAANIRKAIEEMGYENPMPVQEEVIPYLLGETSDIIALAQTGTGKTAAFGLPVL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             +E    +  +P+ LIL PTREL  Q+A +   Y K  +    L + G    E+Q K L
Sbjct: 63  QKIEV---KENVPQALILCPTRELCLQIAGDLADYSKYIDNLRVLPVYGGSSIESQIKSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR++D  NR  + + NI+ +V+DEAD ML+MGF   I  I S VP  R 
Sbjct: 120 KRGVQIIVATPGRLIDLINRKTVDLKNIKYVVLDEADEMLNMGFTESIDEILSKVPDERV 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  E+ K+++ ++Q+PK I +   +   E   +     Y  ++K   L  + +
Sbjct: 180 MLLFSATMPKEIAKITKKYMQSPKEITIGRKN---EGSNNVKHVYYMVHAKDKYLALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  ++    +   L + G++  ++HG++ Q  R  ++  F+   IQL+
Sbjct: 237 ADYYPNIYGIIFCRTRRETQEIADKLIQDGYNADSLHGDLSQAQRDYVMQKFRIHNIQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+ +P+  E+Y HR GRTGRAG+ G + ++V  ++   I  
Sbjct: 297 VATDVAARGLDVDSLTHVINYGLPDDIESYTHRSGRTGRAGKTGTSISIVHVKEKGKIRE 356

Query: 360 IEKLIEKK--------------------VDWLNG------DLSSLNP-------PLEKID 386
           IEK+I KK                    VD +        ++S+L P        LEK D
Sbjct: 357 IEKIINKKFEQGVIPSGEAICEKQLFSLVDRIEKVKVNEDEISNLLPSVYRKLDWLEKED 416

Query: 387 IAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFR 446
           I +   A + N +       D          S    K  +K    ++D + +D  S G R
Sbjct: 417 IIKRVVALEFNRLIDYYRDADE-----IETPSDRFSKGDDKSYPRRKDRERSDRSSGGSR 471

Query: 447 GNMPAF 452
           G    +
Sbjct: 472 GAEKGY 477


>gi|167384217|ref|XP_001736854.1| ATP-dependent rRNA helicase RRP3 [Entamoeba dispar SAW760]
 gi|165900561|gb|EDR26857.1| ATP-dependent rRNA helicase RRP3, putative [Entamoeba dispar
           SAW760]
          Length = 432

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 143/393 (36%), Positives = 215/393 (54%), Gaps = 6/393 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL P+V+  V   GY KPT IQ  +IP+ LQ+ D+ GIAQTG+GKTASF+LPM+ 
Sbjct: 10  TFKDLGLIPEVLKVVEYLGYKKPTKIQENSIPVALQKKDIIGIAQTGSGKTASFLLPMIQ 69

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV-ALLIGGIPFEAQNKKLE 120
            L   + + R    +I+EPTRELAAQV +  ++ GK     +  LL+GG+    Q+ +L 
Sbjct: 70  HLLNVKEKNRAFYCIIIEPTRELAAQVVEVLDEIGKALPGLMSCLLVGGMDVMKQSVQLA 129

Query: 121 RGADVLICTPGRILDHFNRGK---LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +   V++ TPGRI+ H    K     +  ++ LVIDEAD++L+M F   I  +   +P  
Sbjct: 130 KRPHVIVGTPGRIVYHIKNTKGVEESIQKVKFLVIDEADKLLEMDFANEIDYLIEKLPSQ 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R T+LFSATM+ +++K+    L +P +I+                       K       
Sbjct: 190 RTTMLFSATMSTKVEKLQRASLTHPVKIKEEEQKYQTVDTLRQEYCFIPF--KYRDGYLL 247

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +   K+ IIF  +      L   L + G++   +HG + Q+ R+  L  FK G   
Sbjct: 248 SILKETEGKSIIIFTMKCSGCTKLVMMLRQLGYAAIPLHGKMSQQKRLIALEKFKSGKRG 307

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A+RGLDIP+V  V N+D P   ++YIHR+GRT RAG+ G A TLV +  I+  
Sbjct: 308 ILVATDVASRGLDIPNVDIVINYDCPLEPKDYIHRVGRTARAGKSGYAITLVTQYSIELY 367

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
             IE +IEKK++    +        +K + A  
Sbjct: 368 QRIETMIEKKLNEYKVNEKEAIAYSQKANDAMR 400


>gi|328544967|ref|YP_004305076.1| ATP-dependent RNA helicase protein [polymorphum gilvum SL003B-26A1]
 gi|326414709|gb|ADZ71772.1| ATP-dependent RNA helicase protein [Polymorphum gilvum SL003B-26A1]
          Length = 503

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 162/423 (38%), Positives = 231/423 (54%), Gaps = 9/423 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLS  ++ ++   GY  PTPIQ   IP +L  HD+ G+AQTGTGKTA+F LP+  
Sbjct: 21  QFEALGLSSPLLKSIAALGYEAPTPIQTDAIPHILAGHDLMGLAQTGTGKTAAFGLPLAN 80

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A  R  R LIL PTREL  Q+A N   + K   L VA+++GG+    Q K+L
Sbjct: 81  RMLASADTAAPRTTRALILAPTRELVTQIAQNLVAFVKGSPLQVAVVMGGVSIGGQIKRL 140

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD  +R  L ++ +  LV+DEAD+MLD+GFI  ++ I +LVP  RQ
Sbjct: 141 ARGTDILVATPGRLLDLVDRNALRLDEVGYLVLDEADQMLDLGFIHALRKIAALVPKKRQ 200

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  +++ ++  +L++P R+EV     TA+ ++ C                   
Sbjct: 201 TLLFSATMPKQIEDLARAYLKDPVRVEVAPAGRTADKVDQCVHFVAQADKTDL---LISC 257

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+      ++F   K     +   L   G    AIHGN  Q  R + +   K G  +++
Sbjct: 258 LSERAQDLSLVFARTKHGADKVVRKLVAAGLKANAIHGNKSQNQRDRAIKELKTGETRIL 317

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V HV+NFD+P+  E+Y+HRIGRT RAG  G A    A E+I  +  
Sbjct: 318 VATDVAARGIDIPGVSHVYNFDLPDVPESYVHRIGRTARAGADGDAVAFCAPEEIGLLRD 377

Query: 360 IEKLIEKKVDWLNGDLSSL--NPPLEKIDIAQHNHARKNNPIPQKSTGFDR--RKKNYSS 415
           IEKL   KV   +G++ +     P  K    Q  + R       +  G  +  R    S 
Sbjct: 378 IEKLTGLKVRVASGEVPAEGRAAPARKGRGGQRGNDRSGGQAASRKPGNAQGHRDGQKSG 437

Query: 416 QKS 418
           QK+
Sbjct: 438 QKN 440


>gi|182624967|ref|ZP_02952745.1| ATP-dependent RNA helicase DbpA [Clostridium perfringens D str.
           JGS1721]
 gi|177909764|gb|EDT72182.1| ATP-dependent RNA helicase DbpA [Clostridium perfringens D str.
           JGS1721]
          Length = 453

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 125/402 (31%), Positives = 217/402 (53%), Gaps = 31/402 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS  ++ A+ + GY  P+ +Q  +IP +L+  D+   +QTG+GKTASF +P+ 
Sbjct: 1   MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVC 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +V+    L+L PTRELA QV D     G+   +  A + G  PF  Q ++L+
Sbjct: 61  EKINIEEKKVQ---CLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIRELK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+ DH  RG L ++ +  +VIDEAD+ML MGFI  I++I   +   + T
Sbjct: 118 QRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT + E++++ E +++NP  +EV +     +                         
Sbjct: 178 ALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRD------------------------- 212

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               ++   I   +K  V ++   L+ +G +   +HG+++Q+ R++++ NF++   +++V
Sbjct: 213 ---RIEESAIEIEEKNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 269

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ +  +  V N++VP   E+Y+HRIGRTGRAGR GKA T V   + K+++ +
Sbjct: 270 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 329

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           E+ I  ++   +           KI         K +  P+K
Sbjct: 330 EEYIGYEIRKASLPSDDEVKAGRKIFKESQKVQLKESKKPKK 371


>gi|320322648|gb|EFW78741.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 442

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 144/374 (38%), Positives = 216/374 (57%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA +GL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASIGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV ++  +Y ++  L+     GG+    Q  K
Sbjct: 61  QRLTMEGPKVAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ L++DEADRMLD+GF   ++ I +++P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L +P  IEV+  +  A ++            K+ A L   
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSV---QQWVVTVDKKRKADLFIH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +      ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +++
Sbjct: 238 LMKKHRWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+YIHRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357

Query: 359 AIEKLIEKKVDWLN 372
           AIE L  + ++   
Sbjct: 358 AIEVLTRQTLERKE 371


>gi|301621509|ref|XP_002940090.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Xenopus
           (Silurana) tropicalis]
          Length = 760

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 155/477 (32%), Positives = 239/477 (50%), Gaps = 15/477 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++ LS  ++ A+    + +PTPIQ   IP+ L   D+C  A TGTGKTA+F+LP+L  
Sbjct: 185 FQEMNLSRPLLKAISAMSFTQPTPIQKACIPIGLLGKDICACAATGTGKTAAFMLPVLER 244

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L        + R L+L PTREL  QV        +   +T  L +GG+  + Q   L  G
Sbjct: 245 LIYKPREAPVTRVLVLVPTRELGIQVHAVSRLLAQFTEVTTCLAVGGLDVKTQEAALRSG 304

Query: 123 ADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DVLI TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I  L    RQTL
Sbjct: 305 PDVLIATPGRLIDHLHNCPSFSLDSIEVLILDEADRMLDEYFEEQMKEIIRLCSHQRQTL 364

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM++E++ ++   L+NP RI VN+ +  A  +   FV            +   L +
Sbjct: 365 LFSATMSEEVKDLASVSLRNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAVACALLT 424

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++VA
Sbjct: 425 RTFQDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQTQRLESLRRFKDEQIDILVA 484

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V  V N  +P   ++Y+HR+GRT RAG+ G++ +LV +E+ K +  I 
Sbjct: 485 TDVAARGLDIDGVKTVINLTMPGTVKHYVHRVGRTARAGKAGRSVSLVGEEERKMLKEIV 544

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKID--------IAQHNHARKNNPIPQKSTGFDRRK--- 410
           K  +  V         ++   EKI         + Q     K   + +      ++K   
Sbjct: 545 KKAQAPVKARVIPQDVISKFREKITKSEKEIYAVLQLEKEEKEMQMSEAQISVAKKKLQP 604

Query: 411 ---KNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
              +    ++S    KE  +  KL   +QE D    G +         K +G+L  +
Sbjct: 605 GKGEESHPERSWFQTKEERRKEKLSHALQEFDLALRGKKKRKKFMADTKKKGELTAE 661


>gi|290476142|ref|YP_003469042.1| ATP-dependent RNA helicase [Xenorhabdus bovienii SS-2004]
 gi|289175475|emb|CBJ82278.1| ATP-dependent RNA helicase [Xenorhabdus bovienii SS-2004]
          Length = 447

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 132/387 (34%), Positives = 205/387 (52%), Gaps = 6/387 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++  L   ++ A+ + GY +PT IQ + IP  +   DV G A TGTGKTA+++LP + 
Sbjct: 5   NFSEFELDECLLNALNEKGYERPTAIQAEAIPAAMDGRDVLGSAPTGTGKTAAYLLPVLQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVA+  + +  + NL VA + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVAEQAQSFAAHTNLDVATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   ++ I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFANDVETIAGETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT   + ++  +E  L +P  I+        + I+  +        K   L    L
Sbjct: 185 LLFSATLEGETIRDFAERLLTDPVEIDAEPSRRERKKIQQFYYRADNLEHKTALLC--HL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  +   I+F  +++ V  +   L K G   C + G + Q  R   +    +G + +M
Sbjct: 243 LQQPDVTKSIVFVRKRERVREIVDYLHKAGIQACFLEGEMVQTKRTDAVKRLNDGRVNVM 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI ++ HVFNFD+P  A+ Y+HRIGRT RAGR G A  LV   D   +  
Sbjct: 303 VATDVASRGLDIENISHVFNFDLPRTADVYLHRIGRTARAGRKGTAIALVESHDHPLLGK 362

Query: 360 IEKLIEK--KVDWLNGDLSSLNPPLEK 384
           + + + +  KV  ++        P EK
Sbjct: 363 VTRYLNEPLKVRVVDELRPQTKAPSEK 389


>gi|228921162|ref|ZP_04084492.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838478|gb|EEM83789.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 458

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 139/370 (37%), Positives = 217/370 (58%), Gaps = 7/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ K IP++L   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPASSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ I+V +   T +TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K  V  L  +L+  G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKLRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFNFD+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDW 370
           EK +   +  
Sbjct: 360 EKTLGAPIQR 369


>gi|197104230|ref|YP_002129607.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
 gi|196477650|gb|ACG77178.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
          Length = 470

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 160/453 (35%), Positives = 232/453 (51%), Gaps = 15/453 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL+  ++ A+ D GYV PTPIQ + IP V+   D+ GIAQTGTGKTA+F LP+L 
Sbjct: 3   QFTDLGLAKPLLKALADEGYVNPTPIQAQAIPGVMAGRDLLGIAQTGTGKTAAFALPILH 62

Query: 62  ILEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L + R         +L   PTRELA Q+A++F+ YG++  L+VA++ GG+ +  Q + L
Sbjct: 63  RLAEDRRPAPRRSARVLVLSPTRELATQIAESFKAYGRHLGLSVAVIFGGVKYGPQMRAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++DH     +++  +E  V+DEAD+MLDMGFI  I+ I   +P  RQ
Sbjct: 123 AGGVDVLVATPGRLIDHLQEKSVVLEGVETFVLDEADQMLDMGFIVPIRRIVKFLPKRRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSATM  E++K++   L         TP ST     +  V    Q  K+  L +   
Sbjct: 183 NLFFSATMPAEIEKLTGEILNPNPLKVTVTPPSTTVERINQRVLFVEQQRKRALLAEL-- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               + K  I+F   K+    +   LE+ G    +IHG+  Q  R + L+ FK G ++ +
Sbjct: 241 FDDASFKRVIVFTRTKRGADRVARGLEQVGVEAASIHGDKSQGQRERALAAFKAGDVRAL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  V HV  F++PN  E Y+HRIGRT RAG  G A    A ++   +  
Sbjct: 301 VATDIAARGIDIDAVSHVVQFELPNVPEAYVHRIGRTARAGADGSAVAFCADDERNLLKD 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IEK+ ++++           P  ++ +      A    P          R      Q   
Sbjct: 361 IEKVTKQRI-----------PNFDRRNDRHLGAATAALPDTGGKPERSERSAQPHRQGHQ 409

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAF 452
                +    K     Q   A +    G  PAF
Sbjct: 410 KKPNRNHSQGKPGHRPQGGPARTEAGGGERPAF 442


>gi|326796081|ref|YP_004313901.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326546845|gb|ADZ92065.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 446

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 134/438 (30%), Positives = 217/438 (49%), Gaps = 6/438 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F D GL  +++ ++   GY  PT IQ   IP  +   D+   ++TG+GKT +++LP +
Sbjct: 1   MLFKDFGLDTRLMRSLEHFGYDTPTQIQECAIPEAIAGRDLLASSKTGSGKTFAYLLPAI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + ++     R PR ++L PTRELA QV            LT AL++GG  F  Q+K L
Sbjct: 61  NRVYQRKALSRRDPRVVVLVPTRELAKQVYGQLRTLLAGSRLTSALILGGENFNDQHKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++    ++ TPGR+ DH  +  L +   E+L++DEADRMLD+GF   ++ I +     ++
Sbjct: 121 QKDPHFVVGTPGRLTDHLEKRHLYLEGTELLILDEADRMLDLGFADSMRAINNAASHRQR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LF +   D             +   V     T +  +         +      L + L
Sbjct: 181 QTLFFSATLDNTDVSVIAEELLREPSRVAVGHGTDQHQDISQHVFLCDHLDHKEALLKHL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S   +K GI+F   K++ V L   +   G++  A+ G++ Q +R  ++ NF  G  Q++
Sbjct: 241 VSNAELKQGIVFTATKQDTVRLSELVTSWGYTSEALSGDLSQSARNSVMENFSRGKFQIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++D+A+RGLDI  V HVFNFDVPN AE ++HR GRTGRAG  G A+T V  +D  +  A
Sbjct: 301 VSTDIASRGLDIAAVSHVFNFDVPNPAEEFVHRTGRTGRAGFKGDAYTFVGPKDWYNFKA 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNYSSQ 416
           +E+ +  K+ +    +  L P  + +   +       RK      K     + K+  S  
Sbjct: 361 VEEFL--KIQFTTEQVEGLEPSFKGLKAKKTGAKAANRKGQKAKPKKADNRQAKRKSSKT 418

Query: 417 KSHIPLKESEKISKLQQD 434
             H   ++  +  KL + 
Sbjct: 419 VVHDNRQDGFEPFKLPKK 436


>gi|326791684|ref|YP_004309505.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
 gi|326542448|gb|ADZ84307.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
           5427]
          Length = 371

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 137/370 (37%), Positives = 209/370 (56%), Gaps = 6/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LG+SP+++  +  +G   PTPIQ +TIPL+L   DV G AQTGTGKT +F+LP+ 
Sbjct: 1   MNFKTLGISPEMINHLKKSGITIPTPIQDQTIPLILSGKDVIGEAQTGTGKTLAFLLPLF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L    ++    + L+L PTRELA Q+    +K  +   + +  + GG     Q KKL 
Sbjct: 61  EKL---SSKSPNIQALVLSPTRELAIQITQEAKKLAEAKAIGILPIYGGQDTAMQLKKLG 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++I TPGR+LDH  R  + ++     V+DEAD+ML MGF   +++IT  +P  RQT
Sbjct: 118 KPVHLVIATPGRLLDHIGRKSIDLSKTTTFVLDEADQMLLMGFKNDVESITKQLPKKRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   ++K++  +  +P  + +     T E I            +        + 
Sbjct: 178 LCFSATMDAPVKKLAYRYTSSPTTVTIAKKKITIEAI---HQEIVETTDRHKQAALLQVL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+D     IIFC  K+ V  L  +++ + ++   +H +I Q  R +I+ +FK+G IQ ++
Sbjct: 235 SEDNPYMAIIFCRTKRRVEVLYEAMKDKDYNCVRLHSDILQSKRERIMKSFKKGDIQYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V H++N+DVP   E YIHRIGRTGRAG  G     ++ ++ K +  I
Sbjct: 295 ATDVAARGLDISGVTHIYNYDVPETPEAYIHRIGRTGRAGNDGYTCMFMSPKNEKEVSEI 354

Query: 361 EKLIEKKVDW 370
           E  I  K+  
Sbjct: 355 EAHIRFKIPR 364


>gi|225556564|gb|EEH04852.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus G186AR]
          Length = 485

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 141/427 (33%), Positives = 233/427 (54%), Gaps = 12/427 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 60  SFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQ 119

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    LIL PTRELA Q+++ FE  G   ++  A+++GG+   +Q   L +
Sbjct: 120 AL---MNKPQSLFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISLGK 176

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +    N     + N++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 177 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRT 236

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L NP R+ +++  +  +T+     +      K   +    L 
Sbjct: 237 YLFSATMSSKVESLQRASLSNPLRVSISS--NKYQTVATLLQSYLFIPHKYKDVYLVYLL 294

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ I+F         L   L   GF    +HG + Q SR+  LS F+  +  ++V
Sbjct: 295 NEYAGQSAIVFTRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALSKFRSRSRDILV 354

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V NFD+P+ ++ YIHR+GRT RAG+ G AF++V + DI+    I
Sbjct: 355 ATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVWLRI 414

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  + KK+D    +   +    +++  AQ +   +   +       ++R    ++ K   
Sbjct: 415 ENALGKKLDEYKVEKEEVMVLSDRVGEAQRHAITEMKDL------HEKRGSRGATLKGRR 468

Query: 421 PLKESEK 427
           P K +++
Sbjct: 469 PAKGAKR 475


>gi|159463584|ref|XP_001690022.1| DEAD-box RNA helicase [Chlamydomonas reinhardtii]
 gi|158284010|gb|EDP09760.1| DEAD-box RNA helicase [Chlamydomonas reinhardtii]
          Length = 513

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 128/376 (34%), Positives = 207/376 (55%), Gaps = 3/376 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +      V+  VL AG+ +PTPIQ +  P+ L   D+ G+A+TG+GKT +++LP + 
Sbjct: 110 TFEEASFPEYVLEEVLRAGFKEPTPIQCQGWPMALLGRDLIGLAETGSGKTLAYLLPAVV 169

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA Q+    +++G +  +   ++ GG P   Q + L
Sbjct: 170 HINAQPYLQSGDGPIVLVLAPTRELAVQIQQECQRFGASSRIKNTVVYGGAPKGPQARDL 229

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G +++I TPGR++D  +     +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 230 RGGVEIVIATPGRLIDMLDSRITNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 289

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLL+SAT   E+Q ++ +FL++P ++ + +P   A       V     ++K    L++LL
Sbjct: 290 TLLWSATWPKEVQAIARDFLKDPYQVIIGSPDLKANHNIRQVVEMVEGFAKY-PRLRKLL 348

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  +IF   K+    L   L   G+    +HG+  Q+ R  +L  FK GT  +M
Sbjct: 349 DGEMDGRRILIFVETKRGCDELVRQLRTDGYPALGLHGDKSQQERDWVLQEFKNGTHPIM 408

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+ D+  V N+D+P  AE+Y+HRIGRTGRAG  G A++     D +    
Sbjct: 409 LATDVAARGLDVKDIKVVVNYDMPKTAEDYVHRIGRTGRAGATGTAYSFFTNGDARLARQ 468

Query: 360 IEKLIEKKVDWLNGDL 375
           +  ++++       +L
Sbjct: 469 VVDVMQEAGQQPPPEL 484


>gi|120600080|ref|YP_964654.1| ATP-dependent RNA helicase SrmB [Shewanella sp. W3-18-1]
 gi|146291991|ref|YP_001182415.1| ATP-dependent RNA helicase SrmB [Shewanella putrefaciens CN-32]
 gi|120560173|gb|ABM26100.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145563681|gb|ABP74616.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 419

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 136/387 (35%), Positives = 208/387 (53%), Gaps = 7/387 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P ++ ++   G+  PT IQ +TIP  L++ D+   A TGTGKTASF+LP L
Sbjct: 1   MQFEDFHLDPSLLESLKAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPAL 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L     R      + IL PTRELA+Q+         +  L +A++ GG+P+  Q + L
Sbjct: 61  QHLIDFPRRFSGQARILILTPTRELASQIHRYACHLATDQGLDIAIITGGVPYAPQEEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+L+ TPGR++++ ++GK     ++IL+IDEADRMLDMGF   +Q I       +Q
Sbjct: 121 AGNVDILVATPGRLMEYLDKGKFSAEEVDILIIDEADRMLDMGFSSVVQAIALEAQGRKQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT+ +               IE++  +  +E  +       A   +    L   L
Sbjct: 181 NMLFSATL-EGGGVQRFAREVLKDPIEIDVDAPRSEKAKIHQWIHLADDKEHKFALLCHL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+ +K  I+F   +  V +L   L K G     + G+++Q+ R + LS F +G + ++
Sbjct: 240 LRQEDVKRTIVFVKTRDIVTSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI D+ HV NFD+P  A+ YIHRIGRTGRAG  G A +L    D++ +  
Sbjct: 300 LATDVAARGIDIDDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGK 359

Query: 360 IEKLIEKK-----VDWLNGDLSSLNPP 381
           IE+ IE+      ++ L         P
Sbjct: 360 IERYIEQPLKRRVIEELRPKNKEARTP 386


>gi|254565677|ref|XP_002489949.1| Protein involved in rRNA processing [Pichia pastoris GS115]
 gi|238029745|emb|CAY67668.1| Protein involved in rRNA processing [Pichia pastoris GS115]
 gi|328350360|emb|CCA36760.1| ATP-dependent RNA helicase [Pichia pastoris CBS 7435]
          Length = 478

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 138/411 (33%), Positives = 218/411 (53%), Gaps = 10/411 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL P+++ A     Y KPTPIQ ++IP  L+  D+ G+AQTG+GKTA+F +P+L 
Sbjct: 73  SFNDFGLVPEILEACEKLKYTKPTPIQAESIPYALKGRDIIGLAQTGSGKTAAFAIPVLQ 132

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +       +L PTRELA Q+ + F+  G    L    ++GG+    Q K L R
Sbjct: 133 SL---YEQATPFFCCVLAPTRELAYQIKETFDSLGSGMGLRSVCIVGGMDMIDQAKDLMR 189

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR++DH  N     +  ++ L++DEADR+LD+ F P I  +  L+P  R T
Sbjct: 190 KPHVIVATPGRLMDHLENTKGFSLKALKYLIMDEADRLLDLEFGPAIDKVLKLIPRERST 249

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT++++K+    L +P ++ V++  ST +++    +     Y     +      
Sbjct: 250 YLFSATMTNKIEKLQRASLVDPIKVSVSSKYSTVDSLIQSLMVVPDGYKNTFLIYLLNKY 309

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K+ IIF     +            FS   +HG ++Q  R+  L+ FK     ++V
Sbjct: 310 QN---KSIIIFTRTCAHAQRTALLARLMDFSAIPLHGQLNQSQRLGALNKFKARERTILV 366

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V NFD+P  ++ YIHR+GRT RAGR G++ +LV + D++ I  +
Sbjct: 367 ATDVAARGLDIPMVDVVINFDIPTDSKAYIHRVGRTARAGRSGRSISLVTQYDLELILRV 426

Query: 361 EKLIEKKVDW---LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           E ++  K+        ++ SL+  +EK         +++   P       R
Sbjct: 427 ESVLGMKLPKDVPPRDEILSLHNTVEKFHNEAVRQIKEHQNRPSGKRSKKR 477


>gi|332662776|ref|YP_004445564.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332331590|gb|AEE48691.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 442

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 143/445 (32%), Positives = 236/445 (53%), Gaps = 10/445 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+DL L+  ++ A+ D G   PT IQ K   +V+   DVCGIAQTGTGKT +++LP  
Sbjct: 1   MNFSDLNLNKPLLNALQDIGISTPTTIQAKVFSVVMSGKDVCGIAQTGTGKTFAYLLP-- 58

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + +   ++ + P+ LI+ PTREL  QV +  EK  K  +L V  + GG+  + Q  +L 
Sbjct: 59  CLRQYEYSKKKTPQVLIIVPTRELVTQVVEAVEKLSKYLSLVVVGVYGGVNLKPQAAQLA 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GADV++ TPGR++D  + G L   +++ LVIDE D ML++GF   ++ I   +P  RQ 
Sbjct: 119 QGADVVVGTPGRLVDLLSNGVLKTKDLKKLVIDEFDEMLNLGFRAQLKVIFDSIPERRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ ++++ +  ++  N  RIE     +  E I+  +      Y+K   L   L  
Sbjct: 179 LLFSATLNEDVELLIADYFDNLIRIEATPVGTPLENIDQSYYPVPNFYTKVSLLKLLLTS 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +  K  +    +           E+ G  +  IH N  Q  R   ++ F  G  ++++
Sbjct: 239 NPEMSKVLVFVSTKSLADRVFEALDEEWGIKIQVIHSNKSQPFRFAAVNAFHAGESRVLI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+ +V HV NFD+P+  ENYIHRIGRTGR  R G A + V +++ +++  I
Sbjct: 299 ATDIIARGIDVAEVTHVINFDMPSVPENYIHRIGRTGRVERKGIAISFVTEKEQEYLTEI 358

Query: 361 EKLIEKKVDWLN----GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS- 415
           EKL+   V  +      ++S    P E+          K          F ++ +  S  
Sbjct: 359 EKLMNYSVPQVELPEGLEISDQILPEEQPKEYMKTITVKTTIKQNVGPAFHKKSEKNSKV 418

Query: 416 --QKSHIPLKESEKISKLQQDIQEN 438
             +K H+   + +K  K  ++ +++
Sbjct: 419 NVKKDHVAAMK-KKYGKSYENRKKS 442


>gi|260773840|ref|ZP_05882755.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260610801|gb|EEX36005.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 420

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 156/417 (37%), Positives = 235/417 (56%), Gaps = 9/417 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++P +V ++   G   PT IQI+ IP VL  HDV   AQTGTGKTA+F LP+L 
Sbjct: 7   TFLDLGIAPTLVESLNALGIETPTEIQIQAIPPVLAGHDVLAGAQTGTGKTAAFGLPLLQ 66

Query: 62  ILEKGRARVRMPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L   +  V +    I      PTRELA QV D+   Y K   L V +  GG     Q +
Sbjct: 67  RLAASKTDVDVSSKDIRALVLVPTRELAQQVFDSLTAYAKGSELKVVVAYGGTSMSVQKQ 126

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADVLI TPGR+LDH +   L + N++ LV+DEADRMLDMGF+P IQ +   +   
Sbjct: 127 HLRGGADVLIATPGRLLDHAHVKSLYLGNVQTLVLDEADRMLDMGFMPDIQRVLRKLNRA 186

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL FSAT   +++ ++   +  P  ++V   ++TA+T+       Y    K+ + L  
Sbjct: 187 RQTLFFSATFDQKIKALAYRMMHEPIEVQVTPANTTADTV---SQMVYPVDKKRKSELLA 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L      +  ++F   K+    L   L+  G    +I+G+  Q +R K L +FK G I+
Sbjct: 244 YLIGSRNWQQVLVFTKTKQGSDALAQELKLDGIKAASINGDKSQGARQKALDDFKAGKIR 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++A+D+AARG+DI  +  V NFD+P +AE+YIHRIGRTGRAG+ G A +L++ ++   +
Sbjct: 304 ALIATDVAARGIDICQLEQVVNFDLPYKAEDYIHRIGRTGRAGQSGLAVSLMSPQEEPLL 363

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            AIE+L+++++  +WL G   S+    + +   + + + +   +  K     +R K 
Sbjct: 364 QAIERLLDQRLPQEWLKGFEPSVREHDDDMSSQRLSRSAEKRQLKAKLKIHAKRGKR 420


>gi|115840564|ref|XP_785431.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 48
           [Strongylocentrotus purpuratus]
          Length = 360

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 130/362 (35%), Positives = 200/362 (55%), Gaps = 5/362 (1%)

Query: 17  LDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTL 76
            + G+ KP+ IQ + I  V++  DV   AQ+GTGKTA+F + +L  L+    +VR  + L
Sbjct: 3   RELGFEKPSAIQQRAIKPVVKGRDVIAQAQSGTGKTATFSISILQCLDT---QVRETQAL 59

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           IL PTRELA Q+       G   ++     IGG       +KL+ G  V+  TPGR+ D 
Sbjct: 60  ILSPTRELANQIQKVILALGDYMSVQCHSCIGGTNVGEDIRKLDFGQHVVSGTPGRVFDM 119

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
             R  L    I++LV+DEAD ML+ GF   I ++   +P   Q +LFSAT+  E+ +++ 
Sbjct: 120 IRRRNLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLFSATLPHEILEMTS 179

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
            F+ +P RI V     T E I+  FVA   +  K   L         T+   +IFCN K+
Sbjct: 180 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YDTLTITQAVIFCNTKR 237

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
            V  L   + +  F+V ++HG++ Q+ R  I+  F+ G  ++++ +D+ ARGLD+  V  
Sbjct: 238 KVDWLTEKMREANFTVSSMHGDMPQKEREAIMKEFRSGASRVLITTDVWARGLDVQQVSL 297

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
           V N+D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE+    ++D +  +++
Sbjct: 298 VINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMPMNVA 357

Query: 377 SL 378
            L
Sbjct: 358 DL 359


>gi|34581357|ref|ZP_00142837.1| ATP-dependent RNA helicase RhlE [Rickettsia sibirica 246]
 gi|28262742|gb|EAA26246.1| ATP-dependent RNA helicase RhlE [Rickettsia sibirica 246]
          Length = 410

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 142/422 (33%), Positives = 226/422 (53%), Gaps = 15/422 (3%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
            +  LS +++ A+      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP++   
Sbjct: 2   KNFNLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLIDSF 61

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            K +         IL PTRELA Q+     K   +Y +  A+LIGG P   Q  +L++  
Sbjct: 62  IKNKTTAL-----ILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQLKKNP 116

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG    ++ I   +P  RQ L+F
Sbjct: 117 KVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMF 176

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM   +  VS+ +L NP RI V   +  A  I+          S K        Q  +
Sbjct: 177 SATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQ----ESMHVSDKEKFSALTKQLGN 232

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
              + IIF   K++   L   L+ +  +  AIHG++ QR R +++ +F++   ++MVA+D
Sbjct: 233 REGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVATD 292

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +D+    AI++L
Sbjct: 293 VAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIRWRAIDRL 352

Query: 364 IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLK 423
           + K      G+ +  +      +  + +  ++     +K   FD  +K      S+   +
Sbjct: 353 VNK------GESTPRSEFRSDKNNRKRSFGKRAGGDGKKFNAFDSSRKRTFDGNSYGNKR 406

Query: 424 ES 425
           + 
Sbjct: 407 KK 408


>gi|227499384|ref|ZP_03929495.1| ATP-dependent RNA helicase [Anaerococcus tetradius ATCC 35098]
 gi|227218446|gb|EEI83689.1| ATP-dependent RNA helicase [Anaerococcus tetradius ATCC 35098]
          Length = 553

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 146/412 (35%), Positives = 225/412 (54%), Gaps = 15/412 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  +   ++ A+ D GY  P+PIQ +TI  +L   DV G AQTGTGKTA+F +P++
Sbjct: 15  MKFNEFNIGEDILQAIDDMGYTNPSPIQEETIQYLLDGRDVIGQAQTGTGKTAAFAIPLV 74

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             +E       + ++LIL PTREL  QVA   EK  K       L +  G     Q K L
Sbjct: 75  ENVEAN----DITQSLILCPTRELCMQVAREVEKLTKYKKDIKVLALYGGTQIVKQIKAL 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+GA++++ TPGR++D   R  L ++ ++ +V+DEAD M DMGF   ++ I       RQ
Sbjct: 131 EKGAEIVVGTPGRVIDLMKRRVLKLDMLKNVVLDEADEMFDMGFRDDMKVILDATNPQRQ 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T  FSATM  E  + S+ +  NP++I +     T E I+  ++       ++        
Sbjct: 191 TCFFSATMGKEFAEFSKLYQNNPQKIVIKADEVTVEKIDQYYIKLKEAMKEETLTRLL-- 248

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  K  I+FCN K+ V  L   L K+ + V  +HG++ Q +R +++  F+  TIQ++
Sbjct: 249 -EINNPKLAIVFCNTKRKVDKLVEELTKKSYLVDGLHGDLKQSARDQVMKKFRNKTIQIL 307

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI DV  V N+D+P   E Y+HRIGRT RAG+ G +++L+A  D   + A
Sbjct: 308 IATDVAARGLDIDDVDLVINYDLPQLDEYYVHRIGRTARAGKSGVSYSLIAGRDRDRLRA 367

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN-NPIPQKSTGFDRRK 410
           IEK  +  +  +        P L ++D    N+  +N +   + S   DR K
Sbjct: 368 IEKYTKADIKEIPI------PSLIQMDRKSENNLIENLSEKLEASPKLDREK 413


>gi|253700068|ref|YP_003021257.1| DEAD/DEAH box helicase [Geobacter sp. M21]
 gi|251774918|gb|ACT17499.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
          Length = 490

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 142/442 (32%), Positives = 223/442 (50%), Gaps = 20/442 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +  +V   + + G+ + TPIQ K +PL L   DV G AQTGTGKTA+F++ + 
Sbjct: 1   MKFTELKIPAEVQKGIDETGFTQCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIF 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           T    +        PR LIL PTREL  Q+  + +  GK     +  + GG+ +  Q   
Sbjct: 61  TKLLSQAKTGGEHHPRALILAPTRELVVQIEKDAQALGKYTGFNIQAIYGGVDYMKQRDA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ GAD++I TPGR++D+  +    + ++E LVIDEADRM DMGFI  ++ I   +P   
Sbjct: 121 LKAGADIVIGTPGRLIDYLKQKVYSVKDVEALVIDEADRMFDMGFIADLRFILRRLPPYD 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +      + T   + +   +       +V+       T E      Y    K+   L   
Sbjct: 181 KRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPEQM-TAERVEQVLYHVSRKEKFPLLLG 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +  M+  +IF N K+    L   L    F    I G+++QR RMKIL++FK+GT+ +
Sbjct: 240 LLRKMGMERTMIFVNTKREAEYLQDRLNANEFPGKVISGDVEQRKRMKILADFKDGTLPI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+D+A+RG+ I  V HV N+D+P   E+Y+HRIGRT RAG  G A +   ++   +I+
Sbjct: 300 MIATDVASRGIHIEGVSHVINYDLPQDCEDYVHRIGRTARAGAEGMAISFADEDGAFYIE 359

Query: 359 AIEKLIEKKV--DWLNGDL----SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR--- 409
            IE  I++K+  +W   D+         P  + ++    H R   P  +  +G   R   
Sbjct: 360 PIEDFIKQKIPTEWAEDDMFVHDYKRTKPRPRTELP---HGRGGKPGDRGRSGDKGRPGD 416

Query: 410 -----KKNYSSQKSHIPLKESE 426
                 ++ S+  S  P  E +
Sbjct: 417 KGRPAGRSRSASGSDKPAGEKK 438


>gi|50305963|ref|XP_452942.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660551|sp|Q6CSZ7|DHH1_KLULA RecName: Full=ATP-dependent RNA helicase DHH1
 gi|49642075|emb|CAH01793.1| KLLA0C16599p [Kluyveromyces lactis]
          Length = 514

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 121/411 (29%), Positives = 194/411 (47%), Gaps = 19/411 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L  +++  + +AG+ KP+PIQ + IP+ +   D+   A+ GTGKTA+FV+P L 
Sbjct: 37  SFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAIAGKDILARAKNGTGKTAAFVIPTLE 96

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    ++   + LI+ PTRELA Q +      GK+  ++  +  GG        +L  
Sbjct: 97  KVKP---KLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIMRLNE 153

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD  +R    ++   + ++DEAD+ML   F    + I   +P  RQ L
Sbjct: 154 PVHILVGTPGRVLDLASRRVTDLSECHLFIMDEADKMLSRDFKVLAEQILGFLPERRQLL 213

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++    F+    +           T++           K+       L S
Sbjct: 214 LFSATFPVTVKE----FMVKHLKNPHEINLMDELTLKGISQFYAFVEEKQKLHCLNTLFS 269

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + GFS    H  + Q  R K+   F++G ++ +V 
Sbjct: 270 KLQINQAIIFCNSTNRVELLAKKITELGFSCYYSHARMKQSERNKVFHEFRQGKVRTLVC 329

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+   D  ++  IE
Sbjct: 330 SDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIE 389

Query: 362 KLIEKKVDWLNGDLSS------------LNPPLEKIDIAQHNHARKNNPIP 400
           + +  ++  +   +              +  PLE + I  +   +  N  P
Sbjct: 390 QELNTEIAPIPSQIDKSLYVAEDSSAVPIPFPLESLPITANAPQQPANAEP 440


>gi|71277821|ref|YP_268464.1| RNA helicase DeaD [Colwellia psychrerythraea 34H]
 gi|71143561|gb|AAZ24034.1| RNA helicase DeaD [Colwellia psychrerythraea 34H]
          Length = 611

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 148/388 (38%), Positives = 216/388 (55%), Gaps = 10/388 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   ++ AVL  G+   T IQ  TIP +L   DV G AQTGTGKTA+F LP L  
Sbjct: 17  FASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPALAK 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLER 121
           ++    +   P+ ++L PTRELA QVA+  E +GK+     VA L GG  +  Q ++LER
Sbjct: 77  IDTSIKK---PQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLER 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  R  L ++ + + V+DEAD ML+MGF+  IQ I   +P T Q  
Sbjct: 134 GAQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMC 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K++  FL++P+ I+V         I                   + +  
Sbjct: 194 LFSATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQYAWKVSGITK---MTALERIAE 250

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIF   + + V++   LE+ G+   A++G+++Q  R + +   K G   ++VA
Sbjct: 251 VVEYDAMIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSILVA 310

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLDIP +  V N+D+P   E Y+HRIGRTGRAGR G +   V   ++  I   E
Sbjct: 311 TDVVARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRPREMYSIRHYE 370

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
           +L    V  LN DL ++   + KI I +
Sbjct: 371 RLTNGTV--LNYDLPNIQD-IGKIRIER 395


>gi|109897939|ref|YP_661194.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c]
 gi|109700220|gb|ABG40140.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 447

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 126/445 (28%), Positives = 213/445 (47%), Gaps = 7/445 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DL L  ++  A+   G+ + T IQ + IP  L   D+   ++TG+GKT +F+LP +
Sbjct: 1   MQFSDLPLDHRLGKALEIKGFTEATEIQAQAIPYALMGKDLIASSKTGSGKTLAFLLPAV 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   +    + PR LIL PTRELA QV    +     + L  AL++GG  F  Q K L
Sbjct: 61  QRVLTKQPLSRKDPRVLILAPTRELAKQVFFQLKWLIAKHQLKAALILGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                 ++ T GRI DH     L +N +E+L++DEADRMLD+GF   ++ I +     ++
Sbjct: 121 RHYPQFVVGTAGRIADHLAGKSLYLNGLEMLIMDEADRMLDLGFSEQLKQINAAADHRKR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +  +   D                 ++   S+AE  +       A        L   +
Sbjct: 181 QSMMFSATLDNAALHYLTQSMLKAPHRISIGISSAEHKDIQQRFFLADNVTHKERLLTHM 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  I+F   + +   L + L++QG    A+ G++ Q  R  I+S F  G   ++
Sbjct: 241 INEKDHRQVIVFTATRADTERLSNLLKEQGLYSIALSGDLSQGQRNNIMSEFGRGQQHIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+ +V  V NFD+P  A+ Y+HR+GRTGRAG  G+A + V  +D     +
Sbjct: 301 VTTDIASRGLDLLNVSLVVNFDLPKLADEYVHRVGRTGRAGNKGEAVSFVGPKDWASYLS 360

Query: 360 IEKLIEK-----KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           I+  +++     +++ L      L PP +K        + K        +G + +  +  
Sbjct: 361 IKSFLQQEVSFSEIEGLEAKFKGLRPP-KKAKTPVKKASSKAAHNSTAGSGANNQGPDRV 419

Query: 415 SQKSHIPLKESEKISKLQQDIQEND 439
                  + +     K +Q IQ++D
Sbjct: 420 KPMQGTEVGDRPMKRKPRQVIQDDD 444


>gi|195492387|ref|XP_002093968.1| GE20460 [Drosophila yakuba]
 gi|194180069|gb|EDW93680.1| GE20460 [Drosophila yakuba]
          Length = 818

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 134/381 (35%), Positives = 213/381 (55%), Gaps = 3/381 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F + G    V+  +   G+ KPT IQ +  P+ L   D+ G+AQTG+GKT ++VLP +
Sbjct: 156 IEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIALSGRDLVGVAQTGSGKTLAYVLPAV 215

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA Q+     ++G N ++    + GG P   Q + 
Sbjct: 216 VHINNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARD 275

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 276 LERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDR 335

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCALLQQ 237
           Q L++SAT   E+++++E FL N  ++ + + S +A       V    +  K    +   
Sbjct: 336 QVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLL 395

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              S +     IIF   KK V  +  ++ +QG+  CAIHG+  Q+ R  +LS+F+ G   
Sbjct: 396 TDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHS 455

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    +    
Sbjct: 456 ILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKA 515

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
           + + +++ +    +N  L ++
Sbjct: 516 NDLIQVLREANQTINPKLMNM 536


>gi|194865632|ref|XP_001971526.1| GG15018 [Drosophila erecta]
 gi|190653309|gb|EDV50552.1| GG15018 [Drosophila erecta]
          Length = 824

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 134/381 (35%), Positives = 213/381 (55%), Gaps = 3/381 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F + G    V+  +   G+ KPT IQ +  P+ L   D+ G+AQTG+GKT ++VLP +
Sbjct: 157 IEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIALSGRDLVGVAQTGSGKTLAYVLPAV 216

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA Q+     ++G N ++    + GG P   Q + 
Sbjct: 217 VHINNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARD 276

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 277 LERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDR 336

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCALLQQ 237
           Q L++SAT   E+++++E FL N  ++ + + S +A       V    +  K    +   
Sbjct: 337 QVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLL 396

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              S +     IIF   KK V  +  ++ +QG+  CAIHG+  Q+ R  +LS+F+ G   
Sbjct: 397 TDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHS 456

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    +    
Sbjct: 457 ILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKA 516

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
           + + +++ +    +N  L ++
Sbjct: 517 NDLIQVLREANQTINPKLMNM 537


>gi|145300503|ref|YP_001143344.1| ATP-dependent RNA helicase SrmB [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853275|gb|ABO91596.1| ATP-dependent RNA helicase SrmB [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 407

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 126/387 (32%), Positives = 201/387 (51%), Gaps = 7/387 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L P +  A+ + G+ +PT IQ   +   L   D+   A TGTGKTA+FVLP L 
Sbjct: 4   SFDDFDLHPALNRALAEMGFTRPTTIQQMVLEPALDGRDILASAPTGTGKTAAFVLPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L     R   P  + IL PTRELA QV  + +    + NL++  +IGG+  E Q   L 
Sbjct: 64  HLLDFPRRKPGPCRMLILTPTRELALQVTAHAKALAVHTNLSIETIIGGVSHEEQLPALT 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR+L++ ++ +   ++IE+LV+DEADRMLDMGF+  +  I +   + + T
Sbjct: 124 KTTDIVVATPGRLLEYIDKEEFESHDIEVLVLDEADRMLDMGFVKDVNRIVAEARYRKHT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ +             + +E++     +E          A  +     L   + 
Sbjct: 184 MLFSATL-EGAGLEKFANEILNEPVELHAEPPRSERRPITQWVHLADDAAHKLALLIHIL 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F   ++ +  L   L+  G     I G ++Q  R++ +  F  G +  +V
Sbjct: 243 KDPETQKAIVFVRTRERLAELSGQLQAAGIPCAWIRGEMEQSKRVESIRKFHAGEVPFLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+P+V HV N+D+P   + Y+HRIGRTGRAG  G A +LV   D+  +  I
Sbjct: 303 ATDVAARGIDLPNVSHVINYDMPYGTDVYVHRIGRTGRAGNRGCAISLVEAHDMGMVAKI 362

Query: 361 EKLIEKK-----VDWLNGDLSSLNPPL 382
           E+  E++     +D L         P+
Sbjct: 363 ERYTEERLKRRVIDELRPKHKEARVPV 389


>gi|325970751|ref|YP_004246942.1| DEAD/DEAH box helicase [Spirochaeta sp. Buddy]
 gi|324025989|gb|ADY12748.1| DEAD/DEAH box helicase domain protein [Spirochaeta sp. Buddy]
          Length = 622

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 142/368 (38%), Positives = 209/368 (56%), Gaps = 7/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            FADLGLS + + A+   G+ +PT IQ   IPL+L+   DV G AQTGTGKTA+F LP+L
Sbjct: 6   SFADLGLSAQTIAAIKAKGFEEPTKIQSACIPLLLKDQVDVIGQAQTGTGKTAAFGLPIL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I++    +V+    LIL PTRELA Q A+       +  L +A + GG   E Q +KL 
Sbjct: 66  EIVDPSLYQVQA---LILAPTRELAVQNAEEINSLKGDRRLEIAAVYGGASMELQLRKLR 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGRILDH  RG L + +++ +V+DEAD MLDMGFI  I+ +    P  ++ 
Sbjct: 123 RGVHVVVGTPGRILDHLRRGSLHLEHLKFVVLDEADEMLDMGFIEDIEEVLKQTPAEKRM 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   +Q+++E F+ N + +++   + T+                        + 
Sbjct: 183 LCFSATMPQPIQRLAERFMHNAQVVKIQQDTMTSNLT---DQIYVEVKESDKLEALTRII 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +    GIIFC  K     +   L  +G+    +HG++ Q+ R  IL   +E +I ++V
Sbjct: 240 DMEENFYGIIFCRTKVQCDEVGRKLMDRGYDAEPLHGDLSQKQRELILHKMRERSISIIV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV NF +P   + YIHR+GRTGRAG+ G A T VA  + K    I
Sbjct: 300 ATDVAARGIDISDLTHVINFSLPEDPDAYIHRVGRTGRAGKTGIAITFVAPREFKRFSFI 359

Query: 361 EKLIEKKV 368
           + + +  +
Sbjct: 360 KNVSKTNI 367


>gi|313497676|gb|ADR59042.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida BIRD-1]
          Length = 440

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 128/368 (34%), Positives = 197/368 (53%), Gaps = 1/368 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +      R+LIL PTRELA Q     + + +   +   L+ GG  F+ Q   L + 
Sbjct: 62  LVDLKGGRVEIRSLILLPTRELAQQTLKQVQLFSQFTYVKAGLVTGGEDFKEQAAMLRKV 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+L+  N G L ++++++L++DEADRMLDMGF   ++ +        QTLL
Sbjct: 122 PDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQTLL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT T                  +   S +            A + +    + Q L + 
Sbjct: 182 FSAT-TGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLLAN 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T    IIF N +     +   L  +      +HG  DQ+ R   +  FK+G+ +++VA+
Sbjct: 241 ETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVAT 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  +  V NFD+P   + Y+HR+GRTGRAG  G A +L+   D   + +IE+
Sbjct: 301 DVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSIER 360

Query: 363 LIEKKVDW 370
            ++++ + 
Sbjct: 361 YLKQQFER 368


>gi|163789144|ref|ZP_02183587.1| putative RNA helicase dead-box protein [Flavobacteriales bacterium
           ALC-1]
 gi|159875557|gb|EDP69618.1| putative RNA helicase dead-box protein [Flavobacteriales bacterium
           ALC-1]
          Length = 638

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 131/370 (35%), Positives = 216/370 (58%), Gaps = 8/370 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60
            F +LGL+  ++ A+ D G+ KP+ +Q K IPL+L+   D+  +AQTGTGKTA+F  PML
Sbjct: 3   TFQELGLNEDLLNAITDLGFEKPSEVQEKAIPLLLEEDKDLVALAQTGTGKTAAFGFPML 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             ++      R  + LIL PTREL  Q+ +  ++YGK         I G      Q + +
Sbjct: 63  QKIDI---DSRTTQGLILSPTRELCLQITNELKQYGKYCKGLNVTAIYGGASITDQARSV 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA +++ TPGR+ D  +R  + ++ I+  V+DEAD ML+MGF   I +I S  P  + 
Sbjct: 120 KRGAQIIVATPGRMKDMISRKLVDISKIQYSVLDEADEMLNMGFYEDITDILSHTPDDKS 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM  E+  +++ F+ +P  I   T  +  E+  +     Y   ++      + L
Sbjct: 180 TWLFSATMPKEVSTIAKKFMYDPTEI---TVGNRNESTNNVSHEYYLVNARDRYQALKRL 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     +IFC  K++   +  +L + G+S  A+HG++ Q  R  ++ +F+   IQ++
Sbjct: 237 SDANPDIFSVIFCRTKRDTQKVAENLIEDGYSAGALHGDLSQNQRDIVMKSFRNKQIQML 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ D+ HV N+ +P+  E Y HR GRTGRAG+ G +  +V+K + + I +
Sbjct: 297 VATDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIVSKSETRKIKS 356

Query: 360 IEKLIEKKVD 369
           IE++I+K+ +
Sbjct: 357 IERIIKKQFE 366


>gi|87124726|ref|ZP_01080574.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917]
 gi|86167605|gb|EAQ68864.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917]
          Length = 603

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 144/467 (30%), Positives = 241/467 (51%), Gaps = 19/467 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G S  ++  +   GY  P+PIQ    P ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 45  FDGFGFSEALLRTLASKGYQAPSPIQRAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 104

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKLER 121
           L+        P+ L+L PTRELA QVA++F+ Y   +     L I G   F +Q   L+R
Sbjct: 105 LQP---EGPGPQVLVLAPTRELAMQVAESFKAYAAGHPHLNVLAIYGGSDFRSQIHSLKR 161

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR++DH  +G L  +++  LV+DEAD ML MGFI  ++ I   +P  RQ +
Sbjct: 162 GVDVVVGTPGRVMDHMRQGTLNTSHLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQVV 221

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++S+ +L+ P  I + T     +             +         +  
Sbjct: 222 LFSATMPAEIRRLSKRYLREPAEITIKTQE---KEARRIRQRCITLQNSHKLEALNRVLE 278

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T +  IIF   K   + +  +LE  G  V  ++G++ Q  R + +   ++GT+ ++VA
Sbjct: 279 AVTGEGVIIFARTKAITLTVSENLEATGHDVAVLNGDVPQNQRERTVERLRKGTVNILVA 338

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N+D+P  +E Y+HRIGRTGRAGR G+A   V   + + ++ +E
Sbjct: 339 TDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFVTPRERRFVNNLE 398

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           +   + ++ +        P   +I+ A+ ++ R+         G +R+       +  + 
Sbjct: 399 RATGQPIEPMQI------PSNAEINQARLDNLRQKLTAVATGDGAERQADEGPLLQELLQ 452

Query: 422 LKESEKISKLQQDIQENDADSLG-----FRGNMPAFMLPKNRGKLND 463
               E    ++Q        ++G      +G+  +++   NRG+  +
Sbjct: 453 RVAQEHSLSMEQLALAALTLAVGDQPLLVQGDE-SWLQNANRGRTRE 498


>gi|332020362|gb|EGI60783.1| Putative ATP-dependent RNA helicase me31b [Acromyrmex echinatior]
          Length = 444

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 111/375 (29%), Positives = 190/375 (50%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L  +++  + + G+ KP+PIQ  +IP+ L   D+   A+ GTGKT ++ +P+L 
Sbjct: 56  EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDILARAKNGTGKTGAYSIPVLE 115

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    R  + + L++ PTRELA Q +    +  K+ ++ V +  GG        ++ +
Sbjct: 116 QVDP---RKDVIQALVIVPTRELALQTSQICIELAKHMDIKVMVTTGGTNLRDDIMRIYQ 172

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGRILD   +    M + +ILV+DEAD++L   F   + ++ S +P  RQ L
Sbjct: 173 KVQVIIATPGRILDLMEKNVANMEHCKILVLDEADKLLSQDFKGMLDHVISRLPHERQIL 232

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    +++    F++   R           T++           ++       L S
Sbjct: 233 LYSATFPLTVKQ----FMEKHLRDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFS 288

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   +   G+    IH  + Q  R ++  +F+ G  + +V+
Sbjct: 289 KLQITQSIIFCNSTQRVELLAKKITDLGYCCYYIHAKMAQAHRNRVFHDFRAGLCRNLVS 348

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  IE
Sbjct: 349 SDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRFNLHRIE 408

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 409 QELGTEIKPIPKVID 423


>gi|242035801|ref|XP_002465295.1| hypothetical protein SORBIDRAFT_01g035760 [Sorghum bicolor]
 gi|241919149|gb|EER92293.1| hypothetical protein SORBIDRAFT_01g035760 [Sorghum bicolor]
          Length = 618

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 136/406 (33%), Positives = 208/406 (51%), Gaps = 16/406 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF DL L   ++  + + G V+PTPIQ++ +P+VL   D+ GIA TG+GKT  FVLP++ 
Sbjct: 174 DFRDLRLPEPMLRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIM 233

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
                 +         P  +I+ P+RELA Q  D  E++           +   L IGG+
Sbjct: 234 VAVQEEILMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLIPLKEAGYPEIRPLLCIGGV 293

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q   L++G  +++ TPGR+ D   + K+ ++N   L +DEADR++D+GF   I+ +
Sbjct: 294 DMRTQLDVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIKEV 353

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q     F +N     V      A       +       +
Sbjct: 354 FDHFKDQRQTLLFSATMPQKIQN----FAKNALVKPVTVNVGRAGAANLDVIQEVEYVKE 409

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
              ++  L   Q T    +IFC  K +V  +   L  +G    AIHG  DQ  R   + +
Sbjct: 410 DARIIYLLECLQKTPPPVLIFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERQNAIDS 469

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 470 FKTGRKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 529

Query: 351 KEDIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           K   +  +  ++ L+++    +   L+ LN PLE  +I       K
Sbjct: 530 KNQTETTLLDLKHLLKEAKQRIPPVLAELNDPLEDEEIIAKESGVK 575


>gi|221055405|ref|XP_002258841.1| ATP-dependent RNA helicase [Plasmodium knowlesi strain H]
 gi|193808911|emb|CAQ39614.1| ATP-dependent RNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 433

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 112/375 (29%), Positives = 185/375 (49%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + GY KP+PIQ ++IP+ L   ++   A+ GTGKTA+F +P+L 
Sbjct: 61  EFEDYFLKRELLMGIFEKGYEKPSPIQEESIPVALAGKNILARAKNGTGKTAAFAIPLLE 120

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                       + LIL PTRELA Q +   ++ GK+  +   +  GG        +L  
Sbjct: 121 KCNTH---KNFIQGLILVPTRELALQTSAMIKELGKHMKIQCMVTTGGTSLREDIMRLYN 177

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L  TPGRILD  N+    ++   I+V+DEAD++L   F P ++ +   +P  +Q L
Sbjct: 178 VVHILCGTPGRILDLANKDVANLSGCHIMVMDEADKLLSPEFQPIVEELMKFLPKEKQIL 237

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           ++SAT    +++    F Q               T++           ++       L +
Sbjct: 238 MYSATFPVTVKE----FRQIYLSDAHEINLMDELTLKGITQYYAFVKERQKVHCLNTLFA 293

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 294 KLQINQAIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFRNGACRCLVS 353

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  L+  ED  ++  IE
Sbjct: 354 SDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINLITYEDRFNLYKIE 413

Query: 362 KLIEKKVDWLNGDLS 376
             +  ++  +  ++ 
Sbjct: 414 LELGTEIQPIPNEID 428


>gi|156096943|ref|XP_001614505.1| ATP-dependent RNA helicase [Plasmodium vivax SaI-1]
 gi|148803379|gb|EDL44778.1| ATP-dependent RNA helicase, putative [Plasmodium vivax]
          Length = 433

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 112/375 (29%), Positives = 185/375 (49%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + GY KP+PIQ ++IP+ L   ++   A+ GTGKTA+F +P+L 
Sbjct: 61  EFEDYFLKRELLMGIFEKGYEKPSPIQEESIPVALAGKNILARAKNGTGKTAAFAIPLLE 120

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                       + LIL PTRELA Q +   ++ GK+  +   +  GG        +L  
Sbjct: 121 KCNTH---KNFIQGLILVPTRELALQTSAMIKELGKHMKIQCMVTTGGTSLREDIMRLYN 177

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L  TPGRILD  N+    ++   I+V+DEAD++L   F P ++ +   +P  +Q L
Sbjct: 178 VVHILCGTPGRILDLANKDVANLSGCHIMVMDEADKLLSPEFQPIVEELMKFLPKEKQIL 237

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           ++SAT    +++    F Q               T++           ++       L +
Sbjct: 238 MYSATFPVTVKE----FRQIYLSDAHEINLMDELTLKGITQYYAFVKERQKVHCLNTLFA 293

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 294 KLQINQAIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFRNGACRCLVS 353

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  L+  ED  ++  IE
Sbjct: 354 SDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINLITYEDRFNLYKIE 413

Query: 362 KLIEKKVDWLNGDLS 376
             +  ++  +  ++ 
Sbjct: 414 LELGTEIQPIPNEID 428


>gi|83950175|ref|ZP_00958908.1| putative ATP-dependent RNA helicase protein [Roseovarius
           nubinhibens ISM]
 gi|83838074|gb|EAP77370.1| putative ATP-dependent RNA helicase protein [Roseovarius
           nubinhibens ISM]
          Length = 431

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 142/377 (37%), Positives = 222/377 (58%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGL+P +  A+  AG+ +PTPIQ + IPL L+ HD+ G+AQTGTGKT +F LP++ 
Sbjct: 3   DFDMLGLAPALNEALTRAGFSEPTPIQNQAIPLALEGHDILGLAQTGTGKTLAFGLPLIN 62

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               E G+   +  + LIL PTREL  Q+AD+         L VA ++GG     Q   L
Sbjct: 63  HLLAEPGKPAPKTAKALILAPTRELVNQIADSLRNLTDGTRLRVATVVGGQSINRQITFL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR++D  +R  + + ++  LV+DEAD+MLD+GFI  ++ I   +   RQ
Sbjct: 123 ARGTDILVATPGRLIDLMDRRAVDLGSVRHLVLDEADQMLDLGFIHALRKIAPRLGTPRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  +++++S  +L+NP++++V+ P   A+ I                   + +
Sbjct: 183 TMLFSATMPKQMEELSRAYLENPRKVQVSPPGKAADKITQSVHFLEKPAK---PSKLREI 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+D     ++F   K     L   L   G++  +IHGN  Q  R + +  F+ G I ++
Sbjct: 240 LSRDMDALTLVFSRTKHGAEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRAGEINVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V +V N+D+P+  +NY+HRIGRT RAGR G+A    + E+   +  
Sbjct: 300 VATDVAARGIDIPGVAYVINYDLPDVPDNYVHRIGRTARAGREGEAIAFCSSEEADLLRQ 359

Query: 360 IEKLIEKKVDWLNGDLS 376
           I++L++  +   +G L 
Sbjct: 360 IQRLMKIDIPVASGTLP 376


>gi|167969576|ref|ZP_02551853.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis H37Ra]
          Length = 563

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 141/370 (38%), Positives = 213/370 (57%), Gaps = 9/370 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL + P+V+ A+ D GY  PT IQ  TIP ++   DV G+AQTGTGKTA+F +PML+
Sbjct: 14  TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-E 120
            ++      ++P+ L+L PTRELA QVA+ F +YG   +    L I G    A       
Sbjct: 74  KIDIT---SKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLR 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  R  L ++ ++ LV+DEAD ML MGF   ++ I S  P  +Q 
Sbjct: 131 RGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQV 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++K+S  +L +P  +     ++ AE I   ++    +      +L+    
Sbjct: 191 ALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDALTRVLEVEPF 250

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K+    +   L  +GFS  AI G++ Q  R + ++  ++G I ++V
Sbjct: 251 EAM-----IVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  ++  + AI
Sbjct: 306 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAI 365

Query: 361 EKLIEKKVDW 370
           EK   + +  
Sbjct: 366 EKATRQTLTE 375


>gi|15608393|ref|NP_215769.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis H37Rv]
 gi|15840699|ref|NP_335736.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           CDC1551]
 gi|148661040|ref|YP_001282563.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis H37Ra]
 gi|148822470|ref|YP_001287224.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis F11]
 gi|215403092|ref|ZP_03415273.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis 02_1987]
 gi|215410888|ref|ZP_03419696.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215445431|ref|ZP_03432183.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis T85]
 gi|218752952|ref|ZP_03531748.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis GM 1503]
 gi|253799702|ref|YP_003032703.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           1435]
 gi|254231510|ref|ZP_04924837.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis C]
 gi|254550260|ref|ZP_05140707.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289554958|ref|ZP_06444168.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           605]
 gi|289744998|ref|ZP_06504376.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           02_1987]
 gi|289757351|ref|ZP_06516729.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis T85]
 gi|289761405|ref|ZP_06520783.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis GM 1503]
 gi|297633802|ref|ZP_06951582.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           4207]
 gi|297730788|ref|ZP_06959906.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           R506]
 gi|298524756|ref|ZP_07012165.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306775422|ref|ZP_07413759.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu001]
 gi|306781666|ref|ZP_07420003.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu002]
 gi|306788337|ref|ZP_07426659.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu004]
 gi|306792663|ref|ZP_07430965.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu005]
 gi|306797070|ref|ZP_07435372.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu006]
 gi|306802950|ref|ZP_07439618.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu008]
 gi|306807140|ref|ZP_07443808.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu007]
 gi|306967339|ref|ZP_07480000.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu009]
 gi|306971531|ref|ZP_07484192.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu010]
 gi|307079244|ref|ZP_07488414.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu011]
 gi|307083813|ref|ZP_07492926.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu012]
 gi|313658120|ref|ZP_07815000.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           V2475]
 gi|1706338|sp|Q11039|DEAD_MYCTU RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|1480333|emb|CAB00899.1| PROBABLE COLD-SHOCK DEAD-BOX PROTEIN A HOMOLOG DEAD (ATP-dependent
           RNA helicase deaD homolog) [Mycobacterium tuberculosis
           H37Rv]
 gi|13880887|gb|AAK45550.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           CDC1551]
 gi|124600569|gb|EAY59579.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis C]
 gi|148505192|gb|ABQ73001.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis H37Ra]
 gi|148720997|gb|ABR05622.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis F11]
 gi|253321205|gb|ACT25808.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           1435]
 gi|289439590|gb|EFD22083.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           605]
 gi|289685526|gb|EFD53014.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           02_1987]
 gi|289708911|gb|EFD72927.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis GM 1503]
 gi|289712915|gb|EFD76927.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis T85]
 gi|298494550|gb|EFI29844.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308216042|gb|EFO75441.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu001]
 gi|308325627|gb|EFP14478.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu002]
 gi|308335025|gb|EFP23876.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu004]
 gi|308338833|gb|EFP27684.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu005]
 gi|308342518|gb|EFP31369.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu006]
 gi|308346383|gb|EFP35234.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu007]
 gi|308350324|gb|EFP39175.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu008]
 gi|308354954|gb|EFP43805.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu009]
 gi|308358901|gb|EFP47752.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu010]
 gi|308362864|gb|EFP51715.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu011]
 gi|308366530|gb|EFP55381.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu012]
 gi|323720210|gb|EGB29309.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           CDC1551A]
 gi|326902876|gb|EGE49809.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           W-148]
 gi|328459448|gb|AEB04871.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           4207]
          Length = 563

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 141/370 (38%), Positives = 213/370 (57%), Gaps = 9/370 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL + P+V+ A+ D GY  PT IQ  TIP ++   DV G+AQTGTGKTA+F +PML+
Sbjct: 14  TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-E 120
            ++      ++P+ L+L PTRELA QVA+ F +YG   +    L I G    A       
Sbjct: 74  KIDIT---SKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLR 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  R  L ++ ++ LV+DEAD ML MGF   ++ I S  P  +Q 
Sbjct: 131 RGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQV 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++K+S  +L +P  +     ++ AE I   ++    +      +L+    
Sbjct: 191 ALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDALTRVLEVEPF 250

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K+    +   L  +GFS  AI G++ Q  R + ++  ++G I ++V
Sbjct: 251 EAM-----IVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  ++  + AI
Sbjct: 306 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAI 365

Query: 361 EKLIEKKVDW 370
           EK   + +  
Sbjct: 366 EKATRQTLTE 375


>gi|254459373|ref|ZP_05072794.1| ATP-dependent RNA helicase RhlE [Campylobacterales bacterium GD 1]
 gi|207083986|gb|EDZ61277.1| ATP-dependent RNA helicase RhlE [Campylobacterales bacterium GD 1]
          Length = 412

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 136/390 (34%), Positives = 218/390 (55%), Gaps = 9/390 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS ++  A++   + +PTPIQ K IPLVL   DV   A+TG+GK+AS++LP+L
Sbjct: 1   MSFSSLKLSSQINKALVKHNFKEPTPIQEKVIPLVLDGRDVMAKAKTGSGKSASYILPIL 60

Query: 61  TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYG--KNYNLTVALLIGGIPFEAQNK 117
            +L+K R   +   + L+L PTREL  QVA  FE +G        V  +IGG     Q  
Sbjct: 61  ELLQKRRGEGKAKIKVLVLTPTRELTLQVAQAFENFGEFMQTKPKVVSVIGGEGIGDQLY 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +++G D+L+ T GR LD  ++ ++ ++++E LV+DEAD+ML++GF   +  +   +P  
Sbjct: 121 AIQQGCDILVATSGRFLDVLSKKQMNLSHLEFLVLDEADKMLNLGFAEELDLVLEAIPEK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT  +++  ++    Q+   + ++    T +TI                 L +
Sbjct: 181 RQNLLFSATYPEKILNIASRITQDSVEVSIDEDVPTVDTI---IQRVIEVNRDNRGPLLR 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   + +K+ ++F   K+   N+     K GF+  + HG++ Q  R   L+ F++  I 
Sbjct: 238 HLIKSEKLKHILVFMANKRATDNIAEKFRKYGFTAESFHGDLHQEDRTYTLNEFRDKKIN 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ A+D+AARGLDI ++  V NFD+P    +YIHRIGRT RAG+ G A + ++ ED  H 
Sbjct: 298 ILFATDIAARGLDIENIECVINFDLPRSPTDYIHRIGRTARAGKSGLAISFISFEDQAHF 357

Query: 358 DAIEKLIEKKVDWLNGDLSSL---NPPLEK 384
             IEK  + K++    +   L    P +EK
Sbjct: 358 SVIEKKCKVKIEKEQIEGFELIGEAPKVEK 387


>gi|254572992|ref|XP_002493605.1| Essential ATP-dependent RNA helicase of the DEAD-box protein family
           [Pichia pastoris GS115]
 gi|238033404|emb|CAY71426.1| Essential ATP-dependent RNA helicase of the DEAD-box protein family
           [Pichia pastoris GS115]
 gi|328354565|emb|CCA40962.1| ATP-dependent RNA helicase DDX5/DBP2 [Pichia pastoris CBS 7435]
          Length = 537

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 203/380 (53%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+ AV   G+  PT IQ +  P+ L   D+ GIA TG+GKT S+ LP + 
Sbjct: 101 SFDEAGFPDYVLTAVKAQGFPSPTAIQCQGWPMALGGKDMVGIAATGSGKTLSYCLPAIV 160

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA Q+     K+G +  +    + GG+P   Q + L
Sbjct: 161 HINAQPLLKPGDGPVALVLAPTRELAVQIQKECSKFGSSSRIRNTCVYGGVPKGQQIRDL 220

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA+++I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 221 ARGAEIVIATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 280

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT    +Q ++ ++L +  ++ V +    A       +   ++Y K+  L + L 
Sbjct: 281 TLMWSATWPKSVQALARDYLHDYIQVNVGSLELAASHNIKQVIEVLSEYEKRDRLTKYLE 340

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           Q+ +   + I+     K   +   +     G+   AIHG+ +QR R  +L  F+ G   +
Sbjct: 341 QASEDKTSKILVFASTKRTCDELTTYLRSDGWPALAIHGDKEQRERDWVLQEFRSGKSPI 400

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARG+D+  +  V N+D+P   E+Y+HRIGRTGRAG  G A +     + +  D
Sbjct: 401 MVATDVAARGIDVKGINFVVNYDMPGNIEDYVHRIGRTGRAGATGTAVSFFTNANARMAD 460

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++++    +  DL ++
Sbjct: 461 DLVPILKEANQIIPEDLQAM 480


>gi|195352029|ref|XP_002042518.1| GM23393 [Drosophila sechellia]
 gi|194124387|gb|EDW46430.1| GM23393 [Drosophila sechellia]
          Length = 519

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 137/391 (35%), Positives = 220/391 (56%), Gaps = 7/391 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLGL+  +  A  +  +  P+ IQ + IP+ LQ  DV G+A+TG+GKT +F LP+L
Sbjct: 65  LTWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 124

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      L+L PTRELA Q+ + FE  G    +   +++GG+   AQ  +L 
Sbjct: 125 HALLENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 181

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGR++DH    K      I+ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 182 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 241

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L++P +IEV+    T E ++  ++       K   +    +
Sbjct: 242 TFLFSATMTKKVKKLQRASLKDPVKIEVSNKYQTVEQLQQSYLFIPV---KYKDVYLVHI 298

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK     ++
Sbjct: 299 LNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKTKNRSIL 358

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA TLV++ DI+    
Sbjct: 359 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQR 418

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           IE L+ K++     +   +    E++  AQ 
Sbjct: 419 IEHLLGKQLTLYKCEEDEVMALQERVAEAQR 449


>gi|194878451|ref|XP_001974067.1| GG21281 [Drosophila erecta]
 gi|190657254|gb|EDV54467.1| GG21281 [Drosophila erecta]
          Length = 524

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 136/391 (34%), Positives = 221/391 (56%), Gaps = 7/391 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLGL+  +  A  +  +  P+ IQ + IP+ LQ  DV G+A+TG+GKT +F LP+L
Sbjct: 69  LTWKDLGLNETLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 128

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      L+L PTRELA Q+ + FE  G    +   +++GG+   AQ  +L 
Sbjct: 129 HALLENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 185

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGR++DH    K      I+ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 186 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 245

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L++P ++EV+    T E ++  ++       K   +    +
Sbjct: 246 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPV---KYKDVYLVHI 302

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++ +  + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK     ++
Sbjct: 303 LNELSGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 362

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA TLV++ DI+    
Sbjct: 363 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQR 422

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           IE L+ K++     +   +    E++  AQ 
Sbjct: 423 IEHLLGKQLPLYKCEEDEVMALQERVAEAQR 453


>gi|307611190|emb|CBX00835.1| hypothetical protein LPW_25391 [Legionella pneumophila 130b]
          Length = 589

 Score =  160 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 162/500 (32%), Positives = 261/500 (52%), Gaps = 44/500 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+    S  +  A+ D  ++ P+PIQ +TIPL+LQ  D   +AQTGTGKTA+F LP+L 
Sbjct: 7   NFSTFNFSSALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            L      +   + LIL PTRELA QVA+ FE   K   N+T+A+L GG  +  Q K+L 
Sbjct: 67  NL---SPEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGRILDH ++G LL+NN++  ++DEAD ML MGFI  ++ I   +P  +Q 
Sbjct: 124 SGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQM 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   +++++  +L +P  IE+   ++T ++IE  F+           +    ++
Sbjct: 184 ALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVLEVE 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   I+F   K +   +   L++ G    AIHG+I Q  R +I++ FK+G I ++V
Sbjct: 244 DYQGV---IVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV N+D+P+  E Y+HRIGRTGRAGR G     V  ++ + I +I
Sbjct: 301 ATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSI 360

Query: 361 EKLIEKKVDWLNGDLSSL----------------------------------NPPLEKID 386
           E+   ++++ +      +                                  +  +  +D
Sbjct: 361 ERHTRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVEEYIKDHDVSAVD 420

Query: 387 IAQHNHARKNNPIP-QKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGF 445
           +A       +  +P +K     +    +  +++    K  +   + ++D + + AD  G 
Sbjct: 421 VAAALALLLHKDMPWRKELNMPKAASAFKEERARAGEKGLDLRGRFKEDRKSSFADRKGA 480

Query: 446 RGNMPAFML--PKNRGKLND 463
           RG+   F       R K ND
Sbjct: 481 RGSKKDFAKDFSNERKKFND 500


>gi|301610482|ref|XP_002934775.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
           [Xenopus (Silurana) tropicalis]
          Length = 448

 Score =  160 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 139/390 (35%), Positives = 220/390 (56%), Gaps = 7/390 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG++  +       G+ +PT IQI+ IP+ LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 20  TFRELGVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQ 79

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G    +  A+++GGI   +Q+  L +
Sbjct: 80  TLLESPQRLYA---LVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAK 136

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V+I TPGR++DH    K      ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 137 KPHVVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L++P +  V++   T E ++          SK        + 
Sbjct: 197 FLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQ---FYVFIPSKFKDSYLVYIL 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N   +   L   GF+   +HG + Q  R+  L+ FK  +  +++
Sbjct: 254 NELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSILL 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V++ D++    I
Sbjct: 314 ATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRI 373

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           E LI KK+         +    E++  AQ 
Sbjct: 374 EHLIGKKLPAFPTQEEEVMMLNERVSEAQR 403


>gi|51245542|ref|YP_065426.1| ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54]
 gi|50876579|emb|CAG36419.1| probable ATP-dependent RNA helicase [Desulfotalea psychrophila
           LSv54]
          Length = 632

 Score =  160 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 148/381 (38%), Positives = 222/381 (58%), Gaps = 8/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L   +V  ++  G+ +PTPIQ K IPL+L   D+ G AQTGTGKTA+F LP+L  
Sbjct: 57  FTDFNLKSDLVANLVKLGFSQPTPIQEKAIPLLLAGSDLIGQAQTGTGKTAAFGLPLLNN 116

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++      +  + L+L PTRELA QV D    Y  +    V ++ GG  ++AQ   L RG
Sbjct: 117 IDFS---KKCVQALVLAPTRELAQQVGDALATYSGDDGRNVLVVYGGSSYQAQVGGLRRG 173

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A V++ TPGR+LD   +G L ++ ++ LV+DEAD ML MGFI  I+ I S  P  RQT+L
Sbjct: 174 ARVVVGTPGRLLDLIRQGSLKLDQLKTLVLDEADEMLSMGFIDDIETILSQTPKDRQTML 233

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++  +  ++  +L +P+ I ++       +IE  +                     
Sbjct: 234 FSATLSSRVMSIANRYLHSPESISISPKQMIGSSIEQRYYLINNSDKIAAITRV---FEV 290

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T+++ +IF   +  V  L + L  +GF+   + G++ Q +R ++LS FK+G I+++VA+
Sbjct: 291 ETVESALIFARTRATVSELANELISRGFAAEGLSGDLSQEARTRVLSRFKKGQIKVLVAT 350

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI D+ HVFN+D+P   E Y+HRIGRTGRAGR G A +LV   D      IE+
Sbjct: 351 DVAARGLDIDDISHVFNYDLPEDPEVYVHRIGRTGRAGRSGTAISLVTLRDRWMHRRIEQ 410

Query: 363 LIEKKVDWLNGDLSSLNPPLE 383
              KK+  + G+L ++    E
Sbjct: 411 YTGKKL--IKGELPTVEQIEE 429


>gi|221117600|ref|XP_002163251.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           [Hydra magnipapillata]
          Length = 790

 Score =  160 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 143/410 (34%), Positives = 212/410 (51%), Gaps = 6/410 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F   G    ++  +  + Y KPTPIQ + +P+ L   D+ GIA+TG+GKTA+FV PML
Sbjct: 276 ISFGHFGFDDHLMGVIRSSNYSKPTPIQSQAVPVALSGRDIIGIARTGSGKTAAFVWPML 335

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +           P  LI  PTREL  Q+    +++GK YNL V    GG     Q K 
Sbjct: 336 VHIMAQPVLKEGDGPIALICAPTRELCQQINSECKRFGKCYNLRVIACYGGGSKWEQTKG 395

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++GA++++CTPGR++D        +  +  LV DEADRM DMGF P +++I + V   R
Sbjct: 396 LQQGAEIVVCTPGRLIDLIKAKATNLLRVTYLVFDEADRMFDMGFEPQVRSIANNVRPDR 455

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSATM  +++ +  + L +P RI V       E I        +   K   LL   
Sbjct: 456 QCLLFSATMKKKVEWLCRDILSDPIRIVVGELGEANEDIVQAVEVMKSPQQKWNWLLSH- 514

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +    +  + +IF  +K N   +  +L++QG+ +  IHG+ DQ  R  +L  FK+    +
Sbjct: 515 IVEFTSGGSVLIFVTKKSNSEEVAANLKEQGYELGLIHGDFDQFERNNVLKQFKQKQFLI 574

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIP +  V N+DV      + HRIGRTGRAG  G A+TL+  +D     
Sbjct: 575 LVATDVAARGLDIPSIKTVINYDVARDITTHTHRIGRTGRAGEKGIAYTLITPQDTHFAA 634

Query: 359 AIEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNNPIPQKSTG 405
            + + +E     +  +L  L   NP   K    +   A      P+   G
Sbjct: 635 DLVRNLEGANQRVPDELLDLALKNPWFRKTRAKRGRKAANKEFTPRDRPG 684


>gi|281204092|gb|EFA78288.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 443

 Score =  160 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 146/413 (35%), Positives = 223/413 (53%), Gaps = 12/413 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LG+ P++V A    G+  PT IQ K IP  L   D+ G+AQTG+GKTA+F +PML
Sbjct: 13  VTFEKLGVDPQIVEACKKLGFKNPTEIQRKAIPEALAGKDIVGLAQTGSGKTAAFSIPML 72

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L    A+      L+L PTRELA Q++D  E  G    +  A+L+GGI   +Q+  L 
Sbjct: 73  QAL---LAKPSGLFGLVLAPTRELAVQISDQIEALGAVIGVKCAVLVGGIDTMSQSMALA 129

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   +++ TPGR++ H  N     +  ++  V+DEADR+L M F   I  I  ++P  R 
Sbjct: 130 KKPHIIVGTPGRVVYHLENTKGFNLKTLKYFVMDEADRLLGMDFEEEINTILKVIPKDRN 189

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT ++ K+    L +P +I+V T  ST +T++  ++       K        +
Sbjct: 190 TFLFSATMTSKVAKLQRASLNDPVKIQVATKYSTVDTLQQEYIFIPY---KHKECYLTYI 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + IIF +       L   L    F    I+G +DQ  R+  L+ FK  T+ ++
Sbjct: 247 LNELAGNSVIIFTSTCAASTKLAIMLRNLSFKAIPINGQMDQSKRLSSLNKFKAQTMDIL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V N+DVP  ++ Y+HR+GRT RAGR G+A TLV + D++    
Sbjct: 307 VATDVAARGLDIPSVDLVINYDVPVSSKEYMHRVGRTARAGRTGRAVTLVTQYDVEIYLR 366

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           IE  +E+K++    +  S+    E++     N A +      K  G   ++K 
Sbjct: 367 IEHALEQKLEEFPTEQESVLVFSERV-----NEAIRVATNEIKEAGLSEKEKR 414


>gi|154284444|ref|XP_001543017.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
 gi|160358658|sp|A6QRQ7|RRP3_AJECN RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|150406658|gb|EDN02199.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
          Length = 485

 Score =  160 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 140/427 (32%), Positives = 233/427 (54%), Gaps = 12/427 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 60  SFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQ 119

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    LIL PTRELA Q+++ FE  G   ++  A+++GG+   +Q   L +
Sbjct: 120 AL---MNKPQSLFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISLGK 176

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +    N     + +++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 177 KPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERRT 236

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L NP R+ +++  +  +T+     +      K   +    L 
Sbjct: 237 YLFSATMSSKVESLQRASLSNPLRVSISS--NKYQTVATLLQSYLFIPHKYKDIYLVYLL 294

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ I+F         L   L   GF    +HG + Q SR+  LS F+  +  ++V
Sbjct: 295 NEYAGQSAIVFTRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALSKFRSRSRDILV 354

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V NFD+P+ ++ YIHR+GRT RAG+ G AF++V + DI+    I
Sbjct: 355 ATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVWLRI 414

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  + KK+D    +   +    +++  AQ +   +   +       ++R    ++ K   
Sbjct: 415 ENALGKKLDEYKVEKEEVMVLSDRVGEAQRHAITEMKDL------HEKRGSRGATLKGRR 468

Query: 421 PLKESEK 427
           P K +++
Sbjct: 469 PAKGAKR 475


>gi|153807208|ref|ZP_01959876.1| hypothetical protein BACCAC_01486 [Bacteroides caccae ATCC 43185]
 gi|149130328|gb|EDM21538.1| hypothetical protein BACCAC_01486 [Bacteroides caccae ATCC 43185]
          Length = 640

 Score =  160 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 137/378 (36%), Positives = 226/378 (59%), Gaps = 10/378 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP+L
Sbjct: 3   TFEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++    + R+P++LIL PTREL  Q+A +   Y K  +    L + G    ++Q + L
Sbjct: 63  QQIDV---KNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD   R  + ++ I  +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KRGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTDSINAILADVPQERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+N+L+N K I +   +   E+  +     Y  ++K      + +
Sbjct: 180 TLLFSATMSPEIARISKNYLRNAKEITIGRKN---ESTSNVKHVAYTVHAKDKYEALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+
Sbjct: 237 VDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRE 356

Query: 360 IEKLIEKKVDWLNGDLSS 377
           IE++I KK  ++ G++ +
Sbjct: 357 IERIIGKK--FIPGEMPT 372


>gi|104782944|ref|YP_609442.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95111931|emb|CAK16656.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           entomophila L48]
          Length = 454

 Score =  160 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 129/368 (35%), Positives = 195/368 (52%), Gaps = 1/368 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 15  FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L          R LIL PTRELA Q     + + +   +   L+ GG  F+ Q   L + 
Sbjct: 75  LVDLSGPRVEIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRKV 134

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+L+  N G L ++++++L++DEADRMLDMGF   ++ +        QTLL
Sbjct: 135 PDVLIGTPGRLLEQLNAGNLDLSHVKVLILDEADRMLDMGFAEDMERLCKECENREQTLL 194

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT T                  +   S +            A + +    + Q L + 
Sbjct: 195 FSAT-TGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIVQWLLAN 253

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T +  IIF N +     +   L  +      +HG  DQ+ R   +  FK+G  +++VA+
Sbjct: 254 ETYQKAIIFTNTRALADRIYGHLVAKEVKAFVLHGEKDQKDRKLAIDRFKDGGSKVLVAT 313

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + +IE+
Sbjct: 314 DVAARGLDIDGLDLVINFDMPRSGDEYVHRIGRTGRAGGEGLAISLITHNDWNLMSSIER 373

Query: 363 LIEKKVDW 370
            ++++ + 
Sbjct: 374 YLKQQFER 381


>gi|70945363|ref|XP_742509.1| ATP-dependent RNA helicase [Plasmodium chabaudi chabaudi]
 gi|56521533|emb|CAH79576.1| ATP-dependent RNA helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 429

 Score =  160 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 112/375 (29%), Positives = 185/375 (49%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + GY KP+PIQ ++IP+ L   ++   A+ GTGKTA+F +P+L 
Sbjct: 57  EFEDYFLKRELLMGIFEKGYEKPSPIQEESIPVALAGKNILARAKNGTGKTAAFAIPLLE 116

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                       + LIL PTRELA Q +   ++ GK+  +   +  GG        +L  
Sbjct: 117 KCNTH---KNFIQGLILVPTRELALQTSAMIKELGKHMKIQCMVTTGGTSLREDIMRLYN 173

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L  TPGRILD  N+    ++   I+V+DEAD++L   F P ++ +   +P  +Q L
Sbjct: 174 AVHILCGTPGRILDLANKDVANLSGCHIMVMDEADKLLSPEFQPIVEELMKFLPKEKQIL 233

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           ++SAT    +++    F Q               T++           ++       L +
Sbjct: 234 MYSATFPVTVKE----FRQIYLSDAHEINLMDELTLKGITQYYAFVKERQKVHCLNTLFA 289

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 290 KLQINQAIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFRNGACRCLVS 349

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  L+  ED  ++  IE
Sbjct: 350 SDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINLITYEDRFNLYKIE 409

Query: 362 KLIEKKVDWLNGDLS 376
             +  ++  +  ++ 
Sbjct: 410 LELGTEIQPIPNEID 424


>gi|84385387|ref|ZP_00988419.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
           12B01]
 gi|84379984|gb|EAP96835.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
           12B01]
          Length = 443

 Score =  160 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 119/402 (29%), Positives = 196/402 (48%), Gaps = 8/402 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + K T IQ K IP+ +   D+   ++TG+GKT +FVLPM+
Sbjct: 1   MHFKDLGLDNRLLKNLKHYDFKKATEIQSKAIPVAIAGKDLLASSKTGSGKTLAFVLPMI 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR +IL PTRELA QV           +    L++GG  F  Q K L
Sbjct: 61  HKALKTKAFSAKDPRGVILAPTRELAKQVYGELRSMLGGLSYEATLILGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +    ++ TPGR+ DH     L ++ +E L++DEADRMLD+GF P ++ I +     R+
Sbjct: 121 RKYPRFIVATPGRLADHLEHRSLFLDGVETLILDEADRMLDLGFAPELRRIANAAKHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +              ++   S  + ++         +      +   +
Sbjct: 181 QTLMFSATLDHAEVNGIANEMLDAPKRISVGVSNEQHLDITQKFYLCDHLDHKEAILDRV 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  +IF   + +   L   L ++     A+ GN++Q  R  I+S F+    +++
Sbjct: 241 IEEAEYRQVMIFTATRADTDRLTDKLNEKKLKAVALSGNLNQTQRNAIMSQFERAVYKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RG+DIP+V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D      
Sbjct: 301 VTTDVASRGIDIPNVSHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKR 360

Query: 360 IEKLIEKK-----VDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
           +E  +++      ++ L G    + P   K   A+   A+K 
Sbjct: 361 VELYLQQDLTFSVLEGLKGKFKGIKP--RKPAFAKGGPAKKK 400


>gi|326335491|ref|ZP_08201678.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692257|gb|EGD34209.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 572

 Score =  160 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 125/373 (33%), Positives = 211/373 (56%), Gaps = 9/373 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLP 58
           M+ F  LGLS  ++ A+ D G+ +P+ +Q   IP++L    D+  +AQTGTGKTA+F  P
Sbjct: 1   MNLFETLGLSAPLLEAIDDLGFERPSEVQQAAIPVLLAVPTDMVALAQTGTGKTAAFGFP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNK 117
           +L ++        + + LIL PTREL  Q+A   ++Y K       + I G    E Q +
Sbjct: 61  LLHLINPTE---HITQGLILAPTRELCLQIASELKQYAKYMPQVHIVAIYGGASIEEQAR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++GA +++ TPGR+ D   R  + + +I   ++DEAD ML+MGF   I+ I +  P  
Sbjct: 118 NLKKGAHIIVATPGRMQDMMRREFVSITHINYCILDEADEMLNMGFYEDIRAILAETPRE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           + T LFSATM  E+ K+++ F+ +PK I   T     +  ++     Y    ++     +
Sbjct: 178 KNTWLFSATMPTEVAKIAKEFMHHPKEI---TIGHKNQASDNVLHECYIVNGRQRYEALK 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   +     ++FC  K++   +   L + G++  A+HG++ Q  R  ++  F+   IQ
Sbjct: 235 RLADANPSIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKGFRAKQIQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ D+ HV ++ +P+  E Y HR GRTGRAG+ G +  ++ K + K I
Sbjct: 295 MLVATDVAARGIDVDDITHVIHYQLPDEIETYTHRSGRTGRAGKSGVSMVILTKSETKRI 354

Query: 358 DAIEKLIEKKVDW 370
             IE++I+K  ++
Sbjct: 355 KTIERIIQKTFEY 367


>gi|312114880|ref|YP_004012476.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100]
 gi|311220009|gb|ADP71377.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 405

 Score =  160 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 144/374 (38%), Positives = 215/374 (57%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGL+  ++ A+ D  YV+PTPIQ K IP +LQ  D+ G+AQTGTGKTA+F LP+L
Sbjct: 4   VTFEALGLAKPLLRALADENYVEPTPIQEKAIPHLLQGRDLLGLAQTGTGKTAAFALPLL 63

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 +   + R  R LIL PTREL  Q+A +F+ YG +  LT  +++GG+    Q K 
Sbjct: 64  QLLSERQDSPKPRTARALILVPTRELGLQIAASFKSYGHHLKLTSTVIMGGVSIGPQAKA 123

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D L+ TPGR+LDH  +G + +      VIDEADRMLDMGFI  ++ +  ++P  R
Sbjct: 124 LSRGVDFLVATPGRLLDHLGQGTVDLGQTSYFVIDEADRMLDMGFIRDVRKLMKVMPRKR 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q++LFSATM  E+  ++E+ L++P  I +   +   E I+                +   
Sbjct: 184 QSILFSATMPKEIATLAEDILKDPVHITIPAKTVAVERIDQRVHLVTTGNK---PTMLAG 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  Q      I+F   K++   +   L + G    AIHGN  Q +R K L N ++G  ++
Sbjct: 241 LLDQPEFDRVIVFTRTKRSANRVAERLLQGGVPTEAIHGNKSQAARQKALENLRQGKARV 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+ ARG+D+  + HV N+++PN  ENY+HRIGRT RAG  G A +     +   + 
Sbjct: 301 LVATDILARGIDVDSISHVINYELPNDPENYVHRIGRTARAGSDGIAISFCDLSERASLR 360

Query: 359 AIEKLIEKKVDWLN 372
            IE+ + + +  +N
Sbjct: 361 NIERFLGRSLTQVN 374


>gi|195126028|ref|XP_002007476.1| GI12369 [Drosophila mojavensis]
 gi|193919085|gb|EDW17952.1| GI12369 [Drosophila mojavensis]
          Length = 794

 Score =  160 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 133/381 (34%), Positives = 212/381 (55%), Gaps = 3/381 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F + G    V+  +   G+ KPT IQ + +P+ L   D+  +AQTG+GKT ++VLP +
Sbjct: 143 IEFEEGGFPDYVMNEIRKQGFTKPTAIQAQGMPIALSGRDLVAVAQTGSGKTLAYVLPAV 202

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA Q+     ++G N  +    + GG P   Q + 
Sbjct: 203 VHINNQPRLERGDGPIALVLAPTRELAQQIQQVASEFGSNTQVRNTCIFGGAPKGQQARD 262

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 263 LERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDR 322

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQ 237
           Q L++SAT   E+++++E FL N  ++ + + S +A       V    +  K    +   
Sbjct: 323 QVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDESEKIVKLIQLL 382

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              S +     IIF   KK V  +  ++ +QG+  CAIHG+  Q+ R  +LS+F+ G   
Sbjct: 383 TQISGENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHS 442

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    +    
Sbjct: 443 ILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKA 502

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
           + + +++ +    +N  L ++
Sbjct: 503 NDLIQVLREANQTINPKLMNM 523


>gi|330828264|ref|YP_004391216.1| ATP-dependent RNA helicase SrmB [Aeromonas veronii B565]
 gi|328803400|gb|AEB48599.1| ATP-dependent RNA helicase SrmB [Aeromonas veronii B565]
          Length = 407

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 130/384 (33%), Positives = 203/384 (52%), Gaps = 4/384 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L P +  A+ + G+ +PT IQ   +   L   D+   A TGTGKTASF+LP L 
Sbjct: 4   SFDDFDLHPALNRALAEMGFTRPTTIQQMVLEPALDGRDILASAPTGTGKTASFLLPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L     R   P  + IL PTRELA QV  + +    + NL++  +IGG+  E Q   L 
Sbjct: 64  HLLDFPRRKPGPCRMLILTPTRELALQVTAHAKALAAHTNLSIETIIGGVSHEEQLPALT 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR+L++  + +   ++IE+LV+DEADRMLDMGFI  +  I +   + + T
Sbjct: 124 KTTDIVVATPGRLLEYIEKEEFESHDIEVLVLDEADRMLDMGFIKDVNRIVAEARYRKHT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ +               +E++     +E          A  +     L   + 
Sbjct: 184 MLFSATL-EGAGLEKFANEILKDPVELHAEPPRSERRPITQWIHLADDAAHKLALLTHIL 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  IIF   ++ +  L   L+  G S   I G ++Q  R++ +  F EG +  ++
Sbjct: 243 KDPETQKAIIFVKTRERLAELSGQLQAAGISCAWIRGEMEQSKRIESIRKFHEGEVPFLI 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+P+V HV N+D+P  A+ Y+HRIGRTGRAG  G A +LV   D+  +  I
Sbjct: 303 ATDVAARGIDLPNVSHVINYDMPYGADVYVHRIGRTGRAGNRGCAISLVEAHDMAMVAKI 362

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E+  E+++     D   L P  ++
Sbjct: 363 ERYTEERLKRRVID--ELRPKHKE 384


>gi|315223209|ref|ZP_07865070.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
 gi|315187641|gb|EFU21395.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
          Length = 539

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 148/411 (36%), Positives = 236/411 (57%), Gaps = 9/411 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS +++  +  AG+V+ +PIQ +TIPL +   DV G AQTGTGKTA+F  P L  
Sbjct: 24  FNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEK 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +      V+    L++ PTRELA Q  +   ++G++  + V  + GG   E Q K L  G
Sbjct: 84  INTENPVVQA---LVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALRSG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A +++ TPGR+LD   R  L +N++E L++DEAD ML+MGF+  I+ I S VP  RQTLL
Sbjct: 141 AHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPEERQTLL 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D ++++   F++ P  +++     T E ++  ++                    
Sbjct: 201 FSATMPDAIKRIGVKFMKEPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRL---MDV 257

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  +  I+F   K+ V  L   L+ +GF    IHG++DQ  R+++L +FK G + ++VA+
Sbjct: 258 EQPELSIVFGRTKRRVDELTRGLKIRGFRTEGIHGDLDQGKRLRVLRDFKNGNLDILVAT 317

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T VA  ++ ++  IE 
Sbjct: 318 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQVIES 377

Query: 363 LIEKKVDWLNGDLSSLNPPLEK---IDIAQHNHARKNNPIPQKSTGFDRRK 410
           L +K++  +    +      +K   +   + + A ++     +  G D RK
Sbjct: 378 LTKKRMKGMKPATAEEAFQAKKKVALKKIERDFADESIRNQFEKFGKDARK 428


>gi|242399022|ref|YP_002994446.1| ATP-dependent RNA helicase, DEAD-family [Thermococcus sibiricus MM
           739]
 gi|242265415|gb|ACS90097.1| ATP-dependent RNA helicase, DEAD-family [Thermococcus sibiricus MM
           739]
          Length = 382

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 136/372 (36%), Positives = 214/372 (57%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPM 59
           M F  LGLS   + AV   G+ KPT IQ + IP +L+  +D+ G +QTGTGKTA+F LP+
Sbjct: 1   MSFEKLGLSENSLNAVRRKGFEKPTDIQKEVIPRLLRGDNDIIGQSQTGTGKTAAFALPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + ++++    V+     ++ PTRELA QVAD          + V  + GG P   Q + L
Sbjct: 61  IELIDEEIKEVQAI---VITPTRELAIQVADEIRSLRGKRRINVLPVYGGQPIGPQIRNL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG  +++ TPGR++DH  RG L ++ +   ++DEADRMLDMGFI  I+ I       ++
Sbjct: 118 RRGVHIVVGTPGRVIDHIERGTLSLDGVSYFILDEADRMLDMGFIEDIERILRHTSEEKR 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+  E+ +++  +L++ + I +   S   E +E  +                  
Sbjct: 178 VLMFSATIPREILRLARRYLKDYEVIRIQDRSLAPELVEQIYFEVRPNKR----FSLLCS 233

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +    GI+FC  K+    L   L+ +G+SV A++G+I Q+ R +IL  F++G I+++
Sbjct: 234 ILDEKDFYGIVFCQTKRETRELASKLKTKGYSVEALNGDIPQKGRERILERFRKGKIRVL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ D+ HV N+ +P   E Y+HRIGRTGR G+ GKA T VA  +   +  
Sbjct: 294 VATDVAARGIDVKDLTHVINYSIPQNPEAYVHRIGRTGREGKRGKAITFVAPWESPKLRD 353

Query: 360 IEKLIEKKVDWL 371
           IE++   K+  +
Sbjct: 354 IERVARVKIKEM 365


>gi|62857657|ref|NP_001016781.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Xenopus (Silurana)
           tropicalis]
          Length = 609

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 133/379 (35%), Positives = 207/379 (54%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 84  FHQANFPQYVLDVLIDQRFKEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAMVH 143

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK+  L    + GG P   Q + LE
Sbjct: 144 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKSSRLKSTCIYGGAPKGPQIRDLE 203

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 204 RGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 263

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL++  +I +     +A       V    +  K   L+Q + +
Sbjct: 264 LMWSATWPKEVRQLAEDFLRDYVQINIGNLELSANHNILQIVDVCQESEKDHKLIQLMEE 323

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q+ R  +L  F+ G   ++
Sbjct: 324 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQQERDWVLCEFRTGKAPIL 383

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ D+  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    
Sbjct: 384 IATDVASRGLDVEDIKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 443

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E+    +N  L  L
Sbjct: 444 LVKVLEEANQTINPKLMQL 462


>gi|317507153|ref|ZP_07964911.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
 gi|316254555|gb|EFV13867.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
          Length = 530

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 143/373 (38%), Positives = 213/373 (57%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L P V+ AV + GY  P+PIQ +TIP +L   DV G+A TGTGKTA+F LP+L
Sbjct: 9   VTFADLELHPSVLEAVREVGYETPSPIQAQTIPALLDGRDVVGLAATGTGKTAAFALPVL 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + ++    R   P+ L+L PTRELA QV++ F +Y         + I  G  +  Q + L
Sbjct: 69  SRIDPKLRR---PQALVLAPTRELALQVSEAFSRYASKMPQVSVVCIYGGGAYPVQLQAL 125

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA V++ TPGR++DH  RG L +  +  LV+DEAD ML MGF   ++ +       +Q
Sbjct: 126 GRGAQVVVGTPGRVVDHLERGTLKLGELRFLVLDEADEMLKMGFQEDVERVLGAAAEEKQ 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   ++K+S+ +L NP  + V   ++T+E IE  +                 +
Sbjct: 186 VALFSATMPGAIRKISKTYLHNPVEVTVKAATTTSENIEQRYTLVAHHRKLDLLTRILEV 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +    M   I+F   K+    L   L  +GF+   ++G+I Q +R + +S  +EG I ++
Sbjct: 246 EPFSAM---IVFVRTKQATEELAERLRARGFAARPLNGDIPQAARERTVSALREGKIDIL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HVFN+D P+  E+Y+HRIGRTGRAGR G ++  V   +   I A
Sbjct: 303 VATDVAARGLDVERITHVFNYDAPHDTESYVHRIGRTGRAGRTGVSYLFVTPRERSMIGA 362

Query: 360 IEKLIEKKVDWLN 372
           IE+   + +    
Sbjct: 363 IERATRQPLAETP 375


>gi|149192208|ref|ZP_01870425.1| ATP-dependent RNA helicase SrmB [Vibrio shilonii AK1]
 gi|148833966|gb|EDL50986.1| ATP-dependent RNA helicase SrmB [Vibrio shilonii AK1]
          Length = 407

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 121/371 (32%), Positives = 200/371 (53%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L L P ++ A+ + GY +PT IQ + IP  L   D+   A TGTGKTASF +P + 
Sbjct: 4   TFAELDLDPVLLEAIEEMGYSRPTEIQAQAIPQALDAKDILASAPTGTGKTASFAIPAIQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L     +   P  + +L PTRELA QVA++ +   K+  L VA + GG+ ++     L 
Sbjct: 64  YLLDFPRKKAGPARILVLTPTRELAMQVAEHTKALAKHTRLKVATITGGVTYDTHADTLA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR++++    +     IE LV+DEADRMLD+GF P +  +++   + +QT
Sbjct: 124 QTQDIVVATPGRLMEYIESERFDCRAIEWLVLDEADRMLDLGFGPTVDRLSAECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     ++  + + L+ P  I     +   + I   +        K         
Sbjct: 184 LLFSATLEGRGVEGFTADLLKAPAEISAEPSTRERKKITQWYHRADNAEHKLA---LLKH 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F   ++ +  L   L+        I G + Q  R   +S F++G++ ++
Sbjct: 241 ILTEQAQRTIVFLKTRERLGELRQQLDSAQIPCSWIQGEMPQDRRNNAISRFRDGSVNIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV N+D+P  A+ Y+HRIGRT RAG+ G A ++V   D   +D 
Sbjct: 301 LATDVAARGIDLPDVSHVINYDLPRSADVYLHRIGRTARAGKKGTAISIVEAHDQPMMDR 360

Query: 360 IEKLIEKKVDW 370
           + +  ++ +  
Sbjct: 361 VGRYTKELIKE 371


>gi|212636948|ref|YP_002313473.1| ATP-dependent RNA helicase SrmB [Shewanella piezotolerans WP3]
 gi|212558432|gb|ACJ30886.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 410

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 132/390 (33%), Positives = 221/390 (56%), Gaps = 7/390 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L P ++ ++   G+ KPT IQ +TIP+ +++ D+   A TGTGKTASF+LP L
Sbjct: 4   MLFEDLQLDPCLLESLKAMGHNKPTTIQQQTIPVAMEQRDILARAPTGTGKTASFLLPAL 63

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +     R      + +L PTRELA+Q+         + +L ++++ GG+P+  Q + L
Sbjct: 64  QHIIDFPRRFGGQARVLVLTPTRELASQIHRYASHLATDLDLDISIITGGVPYAPQEEAL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++  D+L+ TPGR++++ ++G      +E+LVIDEADRMLDMGF   ++ I       +Q
Sbjct: 124 KKNVDILVATPGRLMEYLDKGLFNAEEVEVLVIDEADRMLDMGFSAVVETIAIESVGRKQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT+ +       +       +++   +  +E  +       A   +    L   +
Sbjct: 184 TMLFSATL-EGSDVGRFSHQLLSNPVKLEAEAPRSEKAKIHQWVHIADDREHKFALLYAI 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+ ++  I+F   ++ V +L   L+KQG +   + G+++Q++R + L  F +G + ++
Sbjct: 243 LQQEEVERAIVFVKTREAVASLDGLLQKQGITCSFMRGDMEQKARFQALGRFTKGEVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+ D+ HV NFD+P  A+ Y+HRIGRTGRAG  G A +LV   DI+ +  
Sbjct: 303 LATDVAARGIDVDDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDIRVVGK 362

Query: 360 IEKLIEKK-----VDWLNGDLSSLNPPLEK 384
           IE+ IE+      +  L        PP +K
Sbjct: 363 IERYIEQPLKRRFIKDLRPKNKEAKPPGKK 392


>gi|154504732|ref|ZP_02041470.1| hypothetical protein RUMGNA_02239 [Ruminococcus gnavus ATCC 29149]
 gi|153794906|gb|EDN77326.1| hypothetical protein RUMGNA_02239 [Ruminococcus gnavus ATCC 29149]
          Length = 550

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 129/361 (35%), Positives = 207/361 (57%), Gaps = 7/361 (1%)

Query: 9   SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
            P+++ AV   G+ + +PIQ K IP+++   DV G AQTGTGKTA+F +P+L  ++    
Sbjct: 35  CPEILKAVKHMGFEEASPIQSKAIPVIMSGKDVIGQAQTGTGKTAAFGIPLLEKIDPKNK 94

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLERGADVLI 127
           +++     +L PTRELA QVA+      K  +    L I  G     Q + L+ G  ++I
Sbjct: 95  KLQAI---VLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSLKSGTQLVI 151

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR++DH  R  + M+++  +V+DEAD ML+MGF   I+ I   +P   QT+LFSATM
Sbjct: 152 GTPGRVMDHMRRKTMKMDHVHTIVLDEADEMLNMGFREDIETILEGIPQEHQTVLFSATM 211

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
              + ++++ F  N + ++V     T   IE  +        K    +   L    T K 
Sbjct: 212 PKAILEITKQFQTNAELVKVTKKELTVPNIEQFYYEVKP---KNKEEVLSRLLDIYTPKL 268

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            ++FCN KK V  L + L  +G+    +HG++ Q  R +++  F+ G   ++V +D+AAR
Sbjct: 269 SVVFCNTKKQVDLLVNGLLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTDILVCTDVAAR 328

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           G+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G++F+ V+  ++  +  I++  + K
Sbjct: 329 GIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVSGREVYKLKEIQRYCKTK 388

Query: 368 V 368
           +
Sbjct: 389 I 389


>gi|170720663|ref|YP_001748351.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida W619]
 gi|169758666|gb|ACA71982.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 559

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 141/386 (36%), Positives = 229/386 (59%), Gaps = 9/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L L+P +V AVL  GY +P+ IQ ++IP++L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FAALDLNPNIVAAVLATGYEEPSAIQHQSIPIILAGHDMIGQAQTGTGKTAAFALPILNK 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKLER 121
           ++  +     P+ LIL PTRELA QVA  FE Y K       + + G  P   Q + +  
Sbjct: 68  IDVSKRE---PQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRN 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R + +++ ++ LV+DEAD ML +GF+  ++ I   +P +RQT+
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPASRQTV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++E   ++ +  +     S  +T+     A    ++ +       L  
Sbjct: 185 LFSATLPSSIRSIAE---RHLREPKHVKIQSKTQTVTAIDQAHLMVHADQKIPAVLRLLE 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I F   K+  ++L  +LE +G+   A++G+I Q  R +++ + K+G + ++VA
Sbjct: 242 VEEFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFN D+P   E+Y+HRIGRTGRAGR G+A  LV   + + +  IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKI 385
           ++  +KV    L    + L+  ++K+
Sbjct: 362 RVTGQKVAEARLPNAQAVLDARIKKL 387


>gi|124430723|ref|NP_001037582.1| DEAD box polypeptide 5 isoform 1 [Bombyx mori]
 gi|95102742|gb|ABF51312.1| DEAD box polypeptide 5 isoform 1 [Bombyx mori]
          Length = 539

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 128/381 (33%), Positives = 209/381 (54%), Gaps = 5/381 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--L 60
           F +      V   V   GY +PTPIQ +  P+ +   ++ G+AQTG+GKT +++LP    
Sbjct: 109 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 168

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +    R   P  L+L PTRELA Q+      +G    +    + GG P   Q + LE
Sbjct: 169 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 228

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 229 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT 288

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL---QQ 237
           L++SAT   E++K++E++L +  +I + +   +A       V    ++ K+  L    Q+
Sbjct: 289 LMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQE 348

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + QSQ+     IIF   K+   N+  ++ + G+    +HG+  Q+ R ++L  FKEG   
Sbjct: 349 IGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRAS 408

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  + +V NFD PN +E+YIHRIGRTGR+   G ++      + +  
Sbjct: 409 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQA 468

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             +  ++++    ++  L S+
Sbjct: 469 KDLVSVLQEANQIISPQLQSM 489


>gi|150016695|ref|YP_001308949.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903160|gb|ABR33993.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 480

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 133/399 (33%), Positives = 217/399 (54%), Gaps = 8/399 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    +S +++ ++   GY  P+ +Q K IP +L   D+   +QTG+GKTA+F +P+  
Sbjct: 4   EFTKFKISDEILKSIEGLGYKNPSKVQEKVIPEILLNKDIIVKSQTGSGKTAAFGIPLCE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++       +P+ L+L PTRELA QV+++    G+   +    + G  P   Q +KL++
Sbjct: 64  KVDWNE---NIPQILVLTPTRELAVQVSEDITNIGRFKRIKSVSIFGKEPISEQERKLKQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGRILDH +RG L +  I+  VIDEAD ML+MGFI  ++ I   +P  + T+
Sbjct: 121 KTHVVVGTPGRILDHIDRGSLNLAQIKYFVIDEADEMLNMGFIGQVEGIIRRLPKKKVTM 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ +E++ + + ++  P  I +N      E I+H    T  +           +  
Sbjct: 181 LFSATIPEEIKVLCDKYMNKPVDISINNQKLINENIDHNLYYTNYEEK---IEKLNDILI 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  +IF   K+NV  +   L+ +G+SV  IHG + Q+ R+ I+  F+ G  +++V+
Sbjct: 238 TEKPETVVIFAKTKENVDTVFQWLKSKGYSVNRIHGGMLQKERLSIMDGFRLGDFRILVS 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLA+RG+D+  + HV N+D+P   E Y+HRIGRTGRAG  GKA +    E  K +  IE
Sbjct: 298 TDLASRGIDVKGITHVINYDLPVEKEAYVHRIGRTGRAGEKGKAISFCVNEKDKLLSEIE 357

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           + I  K+    L   +       E I   +    RK   
Sbjct: 358 EFIGFKIPVYNLPEKIMVEKEKSEGIKTLKSKPKRKEEK 396


>gi|162447374|ref|YP_001620506.1| ATP-dependent RNA helicase, DEAD box containing [Acholeplasma
           laidlawii PG-8A]
 gi|161985481|gb|ABX81130.1| ATP-dependent RNA helicase, superfamily II [Acholeplasma laidlawii
           PG-8A]
          Length = 448

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 149/406 (36%), Positives = 222/406 (54%), Gaps = 7/406 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F++L +  ++  A+  +GY  PT IQ + IP++L   D+ G AQTGTGKTA+F +P+ 
Sbjct: 1   MKFSELNIIERIQKALTLSGYEAPTAIQEQAIPILLSGQDLLGSAQTGTGKTAAFAIPIL 60

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 K     R  + LIL PTRELA Q+ +N + Y K  N+    + GG+  + Q + 
Sbjct: 61  QKIYETKEHKAPRKVQALILTPTRELALQIHENVKIYAKYLNIISTTIYGGVSQKRQEEA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RG DV+I TPGR+LD  N+  + + ++  LV+DEAD+MLDMGFI  + +I    P  R
Sbjct: 121 LKRGVDVVIATPGRLLDLMNQKIISLQDVRYLVLDEADQMLDMGFIKDVTSIVDKTPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATM  +++ +S+  L NP+RI V   + T + I                +    
Sbjct: 181 QTMLFSATMPKQIEVLSKQILVNPERIAVTPVTQTLDAITQSVYMVNKANKTLLLIDL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                 MK+ ++F   K     L  +L   G     IHG+  Q +R + L+NFK+G  ++
Sbjct: 239 -IYTLNMKSVLVFTKTKHGANKLVKNLMNLGIESEPIHGSKSQAARERALANFKKGKTKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  + +V NF++P   E YIHRIGRTGRAG  G A +LV   + K + 
Sbjct: 298 LVATDIAARGIDIEALDYVINFELPEVPETYIHRIGRTGRAGLSGMALSLVDPSEQKLLT 357

Query: 359 AIEKLIEKKVDWL--NGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
            +EK I  K++ +     + S     E I         K    P+K
Sbjct: 358 QVEKHINSKIEAVGHKYQIQSQPKQREVITDKLKTDTSKKQEKPKK 403


>gi|170722989|ref|YP_001750677.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida W619]
 gi|169760992|gb|ACA74308.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 452

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 136/433 (31%), Positives = 220/433 (50%), Gaps = 3/433 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 15  FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +      R LIL PTRELA Q     + + +   +   L+ GG  F+ Q   L + 
Sbjct: 75  LVDLKGARVEIRALILLPTRELAQQTLKQVQLFSQFTYIKAGLVTGGEDFKEQAAMLRKV 134

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+L+  N G L +++++++++DEADRMLDMGF   ++ +        QTLL
Sbjct: 135 PDVLIGTPGRLLEQLNAGNLDLSHVQVMILDEADRMLDMGFAEDMERLCKECENREQTLL 194

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT T                  +   S +            A + +    + Q L + 
Sbjct: 195 FSAT-TGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQVITADHDQHKEAIVQWLLAN 253

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     IIF N +     +   L  +      +HG  DQ+ R   +  FK+G+ +++VA+
Sbjct: 254 EKFDKAIIFTNTRVLADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVAT 313

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + +IE+
Sbjct: 314 DVAARGLDIDGLDLVINFDMPRSGDEYVHRIGRTGRAGGEGLAISLITHNDWNLMSSIER 373

Query: 363 LIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
            ++++ +   +     + N P +     +    +K     +       ++K  +  K++ 
Sbjct: 374 YLKQQFERRVIKEVKGTYNGPKKVKASGKAAGTKKKKTEKKTGDKKAVKRKPTAKPKANA 433

Query: 421 PLKESEKISKLQQ 433
           PL  S+ ++ L++
Sbjct: 434 PLTSSDGLAPLKK 446


>gi|152972774|ref|YP_001337920.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|262040904|ref|ZP_06014130.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330012120|ref|ZP_08307282.1| ATP-dependent RNA helicase RhlB [Klebsiella sp. MS 92-3]
 gi|189040033|sp|A6TGG9|RHLB_KLEP7 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|150957623|gb|ABR79653.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|259041793|gb|EEW42838.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328533935|gb|EGF60594.1| ATP-dependent RNA helicase RhlB [Klebsiella sp. MS 92-3]
          Length = 421

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 132/390 (33%), Positives = 200/390 (51%), Gaps = 9/390 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P V+ A+   G+   TPIQ   +PL L+  DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPAVIEALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 TQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     I+F N K    ++   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLLEEEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLE 383
            AIE  I   +     +    ++ L  PL 
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPLR 398


>gi|195130219|ref|XP_002009550.1| GI15175 [Drosophila mojavensis]
 gi|193908000|gb|EDW06867.1| GI15175 [Drosophila mojavensis]
          Length = 1229

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 139/447 (31%), Positives = 228/447 (51%), Gaps = 12/447 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 534 TWAQCGVSKKEMDVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 593

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +              +I+ PTREL  Q+  +  K+ ++  L    + GG     Q  +L
Sbjct: 594 HILDQPALEDGDGAIAIIMAPTRELCMQIGKDIRKFSRSLGLRPVCVYGGTGISEQIAEL 653

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 654 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRP 713

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   L+ P  + V   S   +               K   L 
Sbjct: 714 DRQTVMFSATFPRQMEALARRILKKPVEVIVGGRSVVCKD--VEQHVVILSDEAKFFKLL 771

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +FK G +
Sbjct: 772 ELLGVYQETGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKV 831

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG  G AFT +  E  ++
Sbjct: 832 RLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGNKGCAFTFITPEQSRY 891

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-----KK 411
              + + +E     +  DL +L    +    A+            K   FD +     K+
Sbjct: 892 AGDVIRALELSGTPVPPDLQTLWNDYKAAQEAEGKTVHTGGGFSGKGFKFDEQEFNAVKE 951

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQEN 438
           +   QK+ + L +S+    ++QDI + 
Sbjct: 952 SKKLQKAALGLADSDDEEDIEQDIDQQ 978


>gi|157962845|ref|YP_001502879.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157847845|gb|ABV88344.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 414

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 155/416 (37%), Positives = 239/416 (57%), Gaps = 10/416 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ L L  K+   +   GY +PT IQ + IP++L   D+   AQTGTGKTA+F LP+L
Sbjct: 3   VSFSSLPLGDKLQRVLAQKGYQQPTAIQAEAIPVILSGQDIMASAQTGTGKTAAFTLPLL 62

Query: 61  T----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                   +     R+P  LIL PTRELA QV  N  +Y  N ++   ++ GG+  +AQ 
Sbjct: 63  QRLLDRSAEDCLTSRLPTALILVPTRELAVQVNGNVSQYAVNTDIASVVIYGGVSIDAQA 122

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            KL  G D+++ TPGR+LDH  RG L +++I+ LV DEADRMLDMGF+  I  I + +P 
Sbjct: 123 TKLAAGCDIIVATPGRLLDHLRRGSLNLSSIDYLVFDEADRMLDMGFMDEISAILTRLPA 182

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT LFSAT +  +  +S+  L  P RIEV+  +S A+++E    A  +    +     
Sbjct: 183 KRQTSLFSATFSTAIYDLSKKLLHKPARIEVDKANSAADSVEQIVYAVDSDRKTELICHL 242

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +      +IF  +K+    +   +   G    A HG++ Q +R ++L++FK+G I
Sbjct: 243 ---IKKYDWHQVLIFSRKKQTADTIAQKMLATGIETKAFHGDLGQGAREQVLNDFKQGKI 299

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLDI ++ +V N+++P  AE+YIHRIGRTGRAG  GKA TL +++D   
Sbjct: 300 KALVATDVAARGLDIVELKYVVNYEIPFIAEDYIHRIGRTGRAGSVGKAVTLYSEDDALL 359

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           ++ +E +++K++   WL G    L    E +       A++     +   G +RR+
Sbjct: 360 LEEVETVLDKRLAPQWLPGFEPDLTKS-EPVSRKNSKTAQRQRAKRRALGGSNRRR 414


>gi|170725054|ref|YP_001759080.1| ATP-dependent RNA helicase DbpA [Shewanella woodyi ATCC 51908]
 gi|169810401|gb|ACA84985.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 469

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 145/404 (35%), Positives = 226/404 (55%), Gaps = 10/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P+++  +   GY   TPIQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 12  MSFSTLTLKPELLDNLKTMGYDSMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLL 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L   R R++   +L+L PTRELA QVA       +  +    L +  G+P   Q   L
Sbjct: 72  HKLNVKRFRIQ---SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH +R +L + ++  LV+DEADRML+MGF+P +  I + +P  RQ
Sbjct: 129 EHGAHIIVGTPGRIIDHLSRERLSLEDVNTLVLDEADRMLEMGFLPDLDYIMAQMPRERQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   ++QK++E          +   +ST ++          + +K      +LL
Sbjct: 189 TLLFSATFPKQIQKIAEEI---MYEPVMVKVTSTHDSNTIDQHFYELESNKDRQKALRLL 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   ++ ++FCN K+   ++  +L   GFSV A+HG+++QR R   L  F   +  +M
Sbjct: 246 LLQHRPESAVVFCNTKRETKDVAATLANDGFSVVALHGDLEQRDRDITLMQFANKSASIM 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N++     E +IHRIGRTGRAG  G A+T    ED   +  
Sbjct: 306 VATDVAARGLDIEALDMVVNYEFAYDTEVHIHRIGRTGRAGSKGAAYTFYNYEDDYKVKL 365

Query: 360 IEKLIEKKV--DWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIP 400
           +E+ +++++  + L  + L    P   K+   Q +  +KN   P
Sbjct: 366 LEEYLDREITSEVLPPENLLDTFPTQPKMVTLQIDGGKKNKLRP 409


>gi|303283774|ref|XP_003061178.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457529|gb|EEH54828.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 456

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 143/409 (34%), Positives = 221/409 (54%), Gaps = 7/409 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+  ++  A  D G+  P+ IQ  +IP  LQ  DV G+AQTG+GKT +F LP+L  
Sbjct: 17  FTVLGVCEELATAAADLGWKDPSEIQRASIPQALQGKDVIGLAQTGSGKTGAFALPILQE 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     + +    L+L PTRELA Q+++ FE  G    +  A+L+GG+   AQ+ +L + 
Sbjct: 77  LLD---KPQAFFALVLSPTRELAIQISEQFEALGAGIGVKCAVLVGGVDMMAQSIQLGKR 133

Query: 123 ADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             V++ TPGR++DH    K      +++L +DEADR+L++ F   I  I  ++P  R+T 
Sbjct: 134 PHVVVGTPGRVVDHLTNTKGFGLKQLQVLCLDEADRLLNLDFEQEIDQILKVIPRDRRTQ 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT ++ K+    L+NP ++EV+       T+           +K        L +
Sbjct: 194 LFSATMTSKVAKLQRACLRNPVKVEVSAKY---STVASLKQQYLFVPAKHKDCYACYLFN 250

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + +    ++F         L       GF    IHG + Q  R+  L+ FK G   ++VA
Sbjct: 251 ELSASTMMVFTRTCDQTRKLALVARNLGFGAIPIHGQMSQPKRLGALNKFKAGERNVLVA 310

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDIP V  V NFDVP  +++Y+HR+GRT RAGR G A TLV + D++    IE
Sbjct: 311 TDVASRGLDIPAVDVVINFDVPQNSKDYVHRVGRTARAGRSGLAITLVTQYDVELYQKIE 370

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           +LI KK+D       ++    E+++ AQ    ++     +K  G  R +
Sbjct: 371 RLINKKLDAYPAPEEAVLLMHERVNEAQRIALQQIREADEKGGGKKRNR 419


>gi|207344698|gb|EDZ71756.1| YHR065Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 496

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 139/367 (37%), Positives = 206/367 (56%), Gaps = 8/367 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L P+++ A  +  Y KPTPIQ K IP  L+ HD+ G+AQTG+GKTA+F +P+L 
Sbjct: 124 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 183

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   +         IL PTRELA Q+ + F+  G    +    ++GG+    Q + L R
Sbjct: 184 RLWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR 240

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH  N     +  ++ LV+DEADR+LDM F P +  I  ++P   +T
Sbjct: 241 KPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT 300

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSATMT ++ K+    L NP +  V+    T +T+    +           +     
Sbjct: 301 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNE 360

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               TM   IIF   K N   L        FS  A+HG+++Q  RM  L  FK G   ++
Sbjct: 361 FIGKTM---IIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSIL 417

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ +LV++ D++ I  
Sbjct: 418 VATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 477

Query: 360 IEKLIEK 366
           IE+++ K
Sbjct: 478 IEEVLGK 484


>gi|195580593|ref|XP_002080120.1| GD24302 [Drosophila simulans]
 gi|194192129|gb|EDX05705.1| GD24302 [Drosophila simulans]
          Length = 519

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 136/391 (34%), Positives = 220/391 (56%), Gaps = 7/391 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLGL+  +  A  +  +  P+ IQ + IP+ LQ  DV G+A+TG+GKT +F LP+L
Sbjct: 65  LTWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 124

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      L+L PTRELA Q+ + FE  G    +   +++GG+   AQ  +L 
Sbjct: 125 HALLENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 181

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGR++DH    K      I+ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 182 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 241

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L++P ++EV+    T E ++  ++       K   +    +
Sbjct: 242 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPV---KYKDVYLVHI 298

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK     ++
Sbjct: 299 LNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKTKNRSIL 358

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA TLV++ DI+    
Sbjct: 359 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQR 418

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           IE L+ K++     +   +    E++  AQ 
Sbjct: 419 IEHLLGKQLTLYKCEEDEVMALQERVAEAQR 449


>gi|66800707|ref|XP_629279.1| hypothetical protein DDB_G0293168 [Dictyostelium discoideum AX4]
 gi|74896763|sp|Q54CE0|DDX17_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx17; AltName:
           Full=DEAD box protein 17
 gi|60462734|gb|EAL60936.1| hypothetical protein DDB_G0293168 [Dictyostelium discoideum AX4]
          Length = 785

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 139/408 (34%), Positives = 224/408 (54%), Gaps = 8/408 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           M F        ++  ++ AG+  PTPIQ +  P+ L+  D+ G+A+TG+GKT +F+LP  
Sbjct: 384 MQFTQAPFPGYLMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSI 443

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +    +        P  L+L PTRELA Q+ +   K+G    ++   + GG     Q   
Sbjct: 444 VHINAQPVLREDDGPIVLVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASKHTQVAA 503

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G +++I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +   R
Sbjct: 504 LKKGVEIVIATPGRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDR 563

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT   E+Q ++ +FL +  ++ + +   TA       V     + KK   +   
Sbjct: 564 QTLMFSATWPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKE-RMLSF 622

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S    +  I+F   +K V +L   L+  GF    IHGN  Q  R  +LS FK G + +
Sbjct: 623 LGSVGRDEKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPI 682

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+D+A+RGLDI D+ +V N+D PN  E YIHRIGRT RAG  G +++L+  ++ +  +
Sbjct: 683 MIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLAN 742

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
            + K++ +    +  +LS+L+     +  +  ++ +K +P P  S  +
Sbjct: 743 ELIKVLTEAKQKIPIELSNLS-----VTPSTSSNTKKFSPYPTYSKRY 785


>gi|332991693|gb|AEF01748.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2]
          Length = 457

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 150/367 (40%), Positives = 218/367 (59%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LGL+  ++ A+   GY  P+PIQ + IP++L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFSELGLAAPLLQAIEKQGYTTPSPIQQQAIPIILEGKDILAAAQTGTGKTAGFSLPLL 60

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  GR       R LIL PTRELAAQV +N + + +   L  A++ GG+    Q K L
Sbjct: 61  HRLLDGRPAASNCVRALILTPTRELAAQVEENVKSFSEFLPLKTAVVFGGVGINPQMKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVLI TPGR+LD + +  +  + +E LV+DEADRMLDMGFI  I+ I  L+P  RQ
Sbjct: 121 RSGVDVLIATPGRLLDLYQQNAVKFSQLETLVLDEADRMLDMGFIHDIKRILKLLPTKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT + E+  +++    NP+++     ++T ET++   V           +     
Sbjct: 181 TLLFSATFSSEITTLAQTITNNPEKVSTAPANTTVETVQQHLVPIDKSKKTAALISL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+  K  ++F   K     +   L +      AIHGN  Q +R K LS FK G I ++
Sbjct: 238 IKQNGWKQVLVFSRTKHGANRIADKLSRARIPSAAIHGNKSQGARTKALSEFKSGEIDVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI ++  V N D+PN   +Y+HRIGRTGRAG  G+A++ V+ +++  +  
Sbjct: 298 VATDIAARGIDINELPIVINIDLPNTPADYVHRIGRTGRAGASGQAWSFVSIDELDQLKD 357

Query: 360 IEKLIEK 366
           IE LI++
Sbjct: 358 IETLIQQ 364


>gi|332020302|gb|EGI60733.1| Putative ATP-dependent RNA helicase DDX5 [Acromyrmex echinatior]
          Length = 570

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 129/380 (33%), Positives = 202/380 (53%), Gaps = 3/380 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + G    V+  +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP +  
Sbjct: 116 FEEGGFPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 175

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  LIL PTRELA Q+      +G +  +    + GG P   Q + LE
Sbjct: 176 INHQPRLSRNDGPIALILAPTRELAQQIQQVASDFGMSSQVRNTCIFGGAPKGPQARDLE 235

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 236 RGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQT 295

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLL 239
           L++SAT   E++ ++E FL +  +I + +    A       V    +Y K+   +     
Sbjct: 296 LMWSATWPKEVRNLAEEFLTDYIQINIGSLQLAANHNILQIVDVCEEYEKESKLMKLLEE 355

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S +     IIF   K+ V ++  ++ + G+    IHG+  Q+ R  +L+ F+     ++
Sbjct: 356 ISNEPENKTIIFVETKRKVDDITRAINRYGWQAIGIHGDKSQQERDYVLNQFRNSRSAIL 415

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV  V N D P+ +E+Y+HRIGRTGR+ R G A+      +      
Sbjct: 416 VATDVAARGLDVEDVKFVINLDYPSNSEDYVHRIGRTGRSQRTGTAYAFFTPGNAHKAGD 475

Query: 360 IEKLIEKKVDWLNGDLSSLN 379
           + +++E+    +N  L  L+
Sbjct: 476 LIQVLEEAKQVVNPKLYDLS 495


>gi|297847848|ref|XP_002891805.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337647|gb|EFH68064.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 412

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 195/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F      
Sbjct: 40  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC---SG 96

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L++    +   + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 97  VLQQLDYTLVQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQA 156

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 157 GVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 216

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 217 VFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDL--YE 274

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 275 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 334

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   + ++D + +  I+
Sbjct: 335 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFITRDDERMLFDIQ 394

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     V+ L  +++ L
Sbjct: 395 KFYNVVVEELPSNVADL 411


>gi|56460599|ref|YP_155880.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
 gi|56179609|gb|AAV82331.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 372

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 159/370 (42%), Positives = 227/370 (61%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M+F+DL LSP+ + A+   GY + TPIQ + IPLVL   DV   AQTGTGKT +F  P +
Sbjct: 1   MNFSDLALSPETLTALSRQGYSESTPIQAEAIPLVLAGKDVMAAAQTGTGKTTAFTAPLL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +    RA+    R LIL PTRELAAQV +N         L  A+  GG+    Q  KL
Sbjct: 61  ELLKSNERAKANTARVLILTPTRELAAQVGENVANLSAGLPLNYAVAFGGVKINPQMMKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD + +  +    +E+LV+DEADRMLDMGFI  I+NI  L+P  RQ
Sbjct: 121 RKGVDILVATPGRLLDLYKQNAVRFPKLEVLVLDEADRMLDMGFIHDIKNIIKLLPAKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT +D+++ +++  L++P  I V  P++TAE I       Y     +   L   L
Sbjct: 181 TLLFSATFSDDIRALAKGLLKSPVEISVALPNATAEPI---EQTLYEVQKSQKLGLLLKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   ++F   K+    L   L+K GFS  AIH    Q +R K L++FK   +Q++
Sbjct: 238 LKSLDLPQVLVFSRTKQGANRLVKQLDKAGFSAAAIHSAKSQGARTKALADFKSAKVQML 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RG+DI  + +V N+D+P+ AE+YIHRIGRTGRAG+ G A +LV  ED+  + A
Sbjct: 298 IATDIASRGIDIEKLPYVINYDLPHVAEDYIHRIGRTGRAGQTGHAISLVTDEDVAALKA 357

Query: 360 IEKLIEKKVD 369
           IE+LI + ++
Sbjct: 358 IEELIGETIE 367


>gi|152986565|ref|YP_001346544.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
 gi|150961723|gb|ABR83748.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
          Length = 447

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 146/372 (39%), Positives = 221/372 (59%), Gaps = 5/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   G   PTPIQ + IP  L+  D+   AQTGTGKTA+F LP+L
Sbjct: 1   MTFASLGLLDPLLKALEGLGLHTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAAFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV  +   YG++  L  A+  GG+    Q  K
Sbjct: 61  QRLTLEGPQVAANSVRALVLVPTRELAEQVHGSIRDYGQHLPLRTAVAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD + +  +    ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLYRQNAVQFARLQALVLDEADRMLDLGFARELDELFAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D ++ ++   L++P  IEV+  ++ A+++    V    +   +       
Sbjct: 181 QTLLFSATFSDAIRTLAGELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQ 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  +  ++F   +K+V  L   L++QG +  +IHG+  Q +R++ L  FK G + L
Sbjct: 241 ANRW---RQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDL 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGATGQALSLVCADEVELLA 357

Query: 359 AIEKLIEKKVDW 370
           AIE LI + +  
Sbjct: 358 AIETLIGQTLQR 369


>gi|16549139|dbj|BAB70762.1| unnamed protein product [Homo sapiens]
          Length = 455

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 135/433 (31%), Positives = 219/433 (50%), Gaps = 7/433 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++  +  A    G+ KPT IQI+ +PL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 25  TFKDLGVTDVLCEACDQLGWTKPTKIQIEAVPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++G            +
Sbjct: 85  ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      I    N     +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++          SK        + 
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ---YYIFIPSKFKDTYLVYIL 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI KK+         +    E++  AQ     +     +K         +    +  I
Sbjct: 379 EHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSREDAGDNDDTEGAI 438

Query: 421 PLKESEKISKLQQ 433
            ++      K+++
Sbjct: 439 GVRNKVAGGKMKK 451


>gi|24372003|ref|NP_716045.1| ATP-dependent RNA helicase RhlB [Shewanella oneidensis MR-1]
 gi|32363323|sp|Q8EJQ5|RHLB_SHEON RecName: Full=ATP-dependent RNA helicase rhlB
 gi|24345864|gb|AAN53490.1|AE015489_3 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 439

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 140/430 (32%), Positives = 222/430 (51%), Gaps = 16/430 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L P+V  A+ + G+   TPIQ  ++P++LQ  D+ G AQTGTGKT +F++    
Sbjct: 10  KFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      ++  PR +I+ PTRELA Q+A +     K+  L V ++ GG  ++ Q K
Sbjct: 70  HLLSSSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+LI T GRI+D+  +G + +N I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLDQGVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T  ++     +            +   +T ++     +    +    L  
Sbjct: 190 DQRLNMLFSATLSMKVQELAYDHMND-PVKVEIAPEEKTSKNIKEEIFYPSQEDKMRLLL 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +D  +  I+F N K +  NL   LE  G  V  + G++ Q+ R++IL  F +G + 
Sbjct: 249 TLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLE---KIDIAQHNHARKNN----PIPQKSTGF 406
            AIE  I   +   N D    L  +  P++   K      N   ++     P   +S G 
Sbjct: 369 PAIETYINHSIPVSNYDRDALLDDIPSPVKIHRKHPAGARNLRERSGAGRTPGAHRSGGR 428

Query: 407 DRRKKNYSSQ 416
             R      Q
Sbjct: 429 PPRHDRTRRQ 438


>gi|262383201|ref|ZP_06076338.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B]
 gi|298373901|ref|ZP_06983859.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_19]
 gi|262296079|gb|EEY84010.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B]
 gi|298268269|gb|EFI09924.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_19]
          Length = 609

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 143/418 (34%), Positives = 232/418 (55%), Gaps = 17/418 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG++  ++ A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA++ LP+L
Sbjct: 3   TFEELGVAAPILKAIQEMGYESPMPVQEEVIPFLLGEDNDVIALAQTGTGKTAAYGLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             +   + +   P+ LIL PTREL  Q+AD+   Y K  +    L + G    E+Q K L
Sbjct: 63  QKINVSQYQ---PQALILCPTRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIESQIKTL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGR++D  NR  + ++N++ +++DEAD ML+MGF   I  I + +P  R 
Sbjct: 120 KRGVHVVVATPGRLIDLMNRKTVDLSNVKNVILDEADEMLNMGFTDSINEILAAIPENRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  E+  +++ ++++PK I +   +   E  ++     Y   ++   L  + L
Sbjct: 180 MLLFSATMPKEIASITKKYMKDPKEIVIGRKN---EGNKNIRDIYYMVRAQDKYLALKRL 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L + G++  ++HG + Q  R  ++  F+   IQL+
Sbjct: 237 ADYYPNIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRIKNIQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G A ++    +   I  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGIAISICHVREKGKIRE 356

Query: 360 IEKLIEKKVDW---------LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           IE++I KK D              L +L   +EK+ + +   A     I +K    D+
Sbjct: 357 IERIINKKFDRGEMPTGEQICEKQLFNLVDQIEKVKVNEEEIASLMPSIYRKLEWLDK 414


>gi|328779178|ref|XP_623193.3| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Apis
           mellifera]
          Length = 588

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 128/379 (33%), Positives = 202/379 (53%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +    P V+  +   GY +PT IQ +  P+ L   D+  IAQTG+GKT  +VLP +  
Sbjct: 115 FEEGNFPPYVLEEIHKQGYSQPTAIQAQGWPIALSGRDLVAIAQTGSGKTLGYVLPAIVH 174

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +           P  LIL PTRELA Q+ +    +G+   +    + GG P   Q   LE
Sbjct: 175 IIHQPRLSNGDGPIALILAPTRELAQQIQEVANCFGEAAGVRNTCIFGGAPKGPQAHDLE 234

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 235 RGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 294

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLL 239
           L++SAT   E++ ++E+FL +   + + + + +A       V    ++ K          
Sbjct: 295 LMWSATWPKEVRALAEDFLSDYMHLNIGSLTLSANHNIIQIVDVCQEFEKDLKLYRLLQE 354

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+ V ++  ++ + G+   +IHG+ +Q+ R  +L  FK G   ++
Sbjct: 355 IGNEKENKTIIFVETKRKVDDITRNIRRDGWQALSIHGDKNQQERDHVLQEFKSGRAPIL 414

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV +V NFD P+ +E+YIHRIGRTGR  + G A+      ++KH   
Sbjct: 415 VATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGRRRQTGTAYAFFTSHNMKHAGD 474

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + +++ +    +N  L+ +
Sbjct: 475 LIEVLREAGQNINPRLTEM 493


>gi|77917943|ref|YP_355758.1| cold-shock inducible ATP-independent RNA helicase [Pelobacter
           carbinolicus DSM 2380]
 gi|77544026|gb|ABA87588.1| ATP-dependent RNA helicase CsdA [Pelobacter carbinolicus DSM 2380]
          Length = 583

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 145/372 (38%), Positives = 215/372 (57%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L L P++   + + GY  P+PIQ ++IP +L+  D+ G AQTGTGKTA+F    L 
Sbjct: 8   TFAELSLCPEINRVIEEIGYETPSPIQARSIPPLLEGRDLLGQAQTGTGKTAAFA---LP 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
           +L +    +R P+ L+L PTRELA QVA+  + Y ++      L +  G     Q ++L+
Sbjct: 65  LLSRLDLSLRSPQVLVLTPTRELALQVAEAVQTYARHLQGFHVLPVYGGQNMGQQLRQLQ 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGRI DH  RG L ++ +  +V+DEAD ML MGFI  ++ I    P  RQT
Sbjct: 125 RGAHVVVGTPGRIQDHLRRGTLKLDRLSCVVVDEADEMLKMGFIDDVEQILEHAPEQRQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +E+ KV+   L+ P  + +   +ST ETI   F                 + 
Sbjct: 185 ALFSATMPNEVLKVARRHLREPVEVRIKAKTSTVETISQRFWQVRGVRK---LDALTRIL 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +   I+F   K   V L   LE +GFS  A++G++ Q  R K +   K G++ ++V
Sbjct: 242 EAEDIDAMIVFVRTKIATVELAEKLEARGFSSAALNGDMTQALREKTVERLKSGSLDIVV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G A   VA  + + + AI
Sbjct: 302 ATDVAARGLDVQRISHVVNYDIPYDTESYVHRIGRTGRAGREGSAILFVAPRERRMLAAI 361

Query: 361 EKLIEKKVDWLN 372
           E+   +K+  + 
Sbjct: 362 EQATRQKIAPMK 373


>gi|54298236|ref|YP_124605.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris]
 gi|53752021|emb|CAH13447.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris]
          Length = 589

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 163/500 (32%), Positives = 264/500 (52%), Gaps = 44/500 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+    S  +  A+ D  ++ P+PIQ +TIPL+L+  D   +AQTGTGKTA+F LP+L 
Sbjct: 7   NFSTFNFSSALNKALEDMKFITPSPIQAQTIPLILEGRDAIALAQTGTGKTAAFALPILQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            L      +   + LIL PTRELA QVA+ FE   K   N+T+A+L GG  +  Q K+L 
Sbjct: 67  NL---SPEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGRILDH ++G LL+NN++  ++DEAD ML MGFI  ++ I   +P  +Q 
Sbjct: 124 SGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQM 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   +++++  +L +P  IE+   ++T ++IE  F+           +    ++
Sbjct: 184 ALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVLEVE 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   I+F   K +   +   L++ G    AIHG+I Q  R +I++ FK+G I ++V
Sbjct: 244 DYQGV---IVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV N+D+P+  E Y+HRIGRTGRAGR G     V  ++ + I +I
Sbjct: 301 ATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSI 360

Query: 361 EKLIEKKVDWLNGD-------------LSSLNPPL---------------------EKID 386
           E+   ++++ +                +S++   L                       +D
Sbjct: 361 ERHTRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVEEYIKEHDVSAVD 420

Query: 387 IAQHNHARKNNPIP-QKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGF 445
           +A       +  +P +K     +    +  +++ +  K  +   + ++D + + AD  G 
Sbjct: 421 VAAALALLLHKDMPWRKELNMPKAASAFKEERARVGEKGLDLRGRFKEDRKSSFADRKGA 480

Query: 446 RGNMPAFML--PKNRGKLND 463
           RG+   F       R K ND
Sbjct: 481 RGSKKDFAKDFSNERKKFND 500


>gi|301311699|ref|ZP_07217624.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           20_3]
 gi|300830259|gb|EFK60904.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           20_3]
          Length = 606

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 143/418 (34%), Positives = 232/418 (55%), Gaps = 17/418 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG++  ++ A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA++ LP+L
Sbjct: 3   TFEELGVAAPILKAIQEMGYESPMPVQEEVIPFLLGEDNDVIALAQTGTGKTAAYGLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             +   + +   P+ LIL PTREL  Q+AD+   Y K  +    L + G    E+Q K L
Sbjct: 63  QKINVSQYQ---PQALILCPTRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIESQIKTL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGR++D  NR  + ++N++ +++DEAD ML+MGF   I  I + +P  R 
Sbjct: 120 KRGVHVVVATPGRLIDLMNRKTVDLSNVKNVILDEADEMLNMGFTDSINEILAAIPENRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  E+  +++ ++++PK I +   +   E  ++     Y   ++   L  + L
Sbjct: 180 MLLFSATMPKEIASITKKYMKDPKEIVIGRKN---EGNKNIRDIYYMVRAQDKYLALKRL 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L + G++  ++HG + Q  R  ++  F+   IQL+
Sbjct: 237 ADYYPNIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRIKNIQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G A ++    +   I  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGIAISICHVREKGKIRE 356

Query: 360 IEKLIEKKVDW---------LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           IE++I KK D              L +L   +EK+ + +   A     I +K    D+
Sbjct: 357 IERIINKKFDKGEMPTGEQICEKQLFNLVDQIEKVKVNEEEIASLMPSIYRKLEWLDK 414


>gi|150009493|ref|YP_001304236.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503]
 gi|256838225|ref|ZP_05543735.1| ATP-dependent RNA helicase [Parabacteroides sp. D13]
 gi|149937917|gb|ABR44614.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503]
 gi|256739144|gb|EEU52468.1| ATP-dependent RNA helicase [Parabacteroides sp. D13]
          Length = 610

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 143/418 (34%), Positives = 232/418 (55%), Gaps = 17/418 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG++  ++ A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA++ LP+L
Sbjct: 3   TFEELGVAAPILKAIQEMGYESPMPVQEEVIPFLLGEDNDVIALAQTGTGKTAAYGLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             +   + +   P+ LIL PTREL  Q+AD+   Y K  +    L + G    E+Q K L
Sbjct: 63  QKINVSQYQ---PQALILCPTRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIESQIKTL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGR++D  NR  + ++N++ +++DEAD ML+MGF   I  I + +P  R 
Sbjct: 120 KRGVHVVVATPGRLIDLMNRKTVDLSNVKNVILDEADEMLNMGFTDSINEILAAIPENRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  E+  +++ ++++PK I +   +   E  ++     Y   ++   L  + L
Sbjct: 180 MLLFSATMPKEIASITKKYMKDPKEIVIGRKN---EGNKNIRDIYYMVRAQDKYLALKRL 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L + G++  ++HG + Q  R  ++  F+   IQL+
Sbjct: 237 ADYYPNIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRIKNIQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G A ++    +   I  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGIAISICHVREKGKIRE 356

Query: 360 IEKLIEKKVDW---------LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           IE++I KK D              L +L   +EK+ + +   A     I +K    D+
Sbjct: 357 IERIINKKFDKGKMPTGEQICEKQLFNLVDQIEKVKVNEEEIASLMPSIYRKLEWLDK 414


>gi|332308441|ref|YP_004436292.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175770|gb|AEE25024.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 421

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 134/414 (32%), Positives = 221/414 (53%), Gaps = 9/414 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL ++ +VV A+  A +   TPIQ  ++P +L+ +D+ G AQTGTGKT +F++     
Sbjct: 11  FADLPINEQVVKALSAANFSHCTPIQALSLPPLLEGNDIAGQAQTGTGKTIAFLVATFHY 70

Query: 63  L-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L    +   + PR +I+ PTRELA Q+ ++ E   ++  L++ L+ GG  +++Q +KLE 
Sbjct: 71  LLSNPQPTKKQPRAIIMAPTRELAVQIFNDAELLSQHTGLSLGLIYGGEGYQSQREKLEE 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D++I T GRI+D++ +    +  I++ V+DEADRM D+GFI  I+ + + +P   + L
Sbjct: 131 GVDIIIGTTGRIIDYYKQNIFSLAGIQVAVLDEADRMFDLGFIKDIRYLFNRMPNPSERL 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
               + T   +     +        V       +T        +    +    L   L  
Sbjct: 191 SMLFSATLSYRVQELAYEHMNNPTHVQVEPER-KTGTRIKEELFYPSDEDKMALLLSLME 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++     I+F N K +   +   L+  G  V  + G++ Q  R+KIL +F  G + ++VA
Sbjct: 250 EEWPDKAIVFANTKHSCEKVSDWLQADGHRVGLLSGDVPQNKRLKILEDFTSGKLDILVA 309

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGL IP V HVFN+D+P+ AE+Y+HRIGRTGRAG+ G + +   +    ++ AIE
Sbjct: 310 TDVAARGLHIPMVSHVFNYDLPDDAEDYVHRIGRTGRAGQSGSSISFACERYALNLPAIE 369

Query: 362 KLIEKKVD--WLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
             IE  +     + D  +  + PP  +      N     NP  + S+G   R+K
Sbjct: 370 TYIEHAIPVTEYHADALIRDVTPPKPRHKKRMQNG---RNPQKRHSSGSRNRRK 420


>gi|302853426|ref|XP_002958228.1| hypothetical protein VOLCADRAFT_77867 [Volvox carteri f.
           nagariensis]
 gi|300256416|gb|EFJ40682.1| hypothetical protein VOLCADRAFT_77867 [Volvox carteri f.
           nagariensis]
          Length = 574

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 131/397 (32%), Positives = 207/397 (52%), Gaps = 25/397 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            + + GL   ++ A+   GY KP+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLP   
Sbjct: 156 KWEESGLPSLLIKAIDRVGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLS 215

Query: 59  --MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             M             P  ++L PTRELA Q+ +   K     N  +A ++GG   E Q 
Sbjct: 216 YIMRQPPMTEENEADGPYAVVLAPTRELAQQIEEETHKLAYYTNYRIASVVGGQSIEEQG 275

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP- 175
            KL +G +++I TPGR+LD  +R   ++N    +V+DEADRM+D+GF P +  +   +P 
Sbjct: 276 AKLRKGCEIVIATPGRLLDCIDRHYAVLNQCNYVVLDEADRMIDLGFEPQVIGVLDAMPS 335

Query: 176 ----------------FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
                             R T +FSATM   ++++++ +    +R  V    S  +  ++
Sbjct: 336 SFLKPDEDGAVLEANRTYRTTYMFSATMPPAVERLAKKY---LRRPVVVVIGSAGKVTDN 392

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                +     +   + +        K  I+F N ++   N+   LE+ G+    +HG  
Sbjct: 393 VTQRVFVVKENEKPRVLEQEMESVDEKRVIVFVNTQRQCDNVHRHLEELGYRCTILHGGK 452

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q  R   +  F++GT   ++A+D+A RG+D+PDV  V N+D+PN  ENY HRIGRTGRA
Sbjct: 453 TQDQREAGIKGFRDGTYNCLIATDVAGRGIDVPDVALVINYDMPNNIENYTHRIGRTGRA 512

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
           G+ G A T +   D      ++KL+E+    +  +L+
Sbjct: 513 GKKGVAVTFLTLGDTGVFYDLKKLLEESKAAVPPELA 549


>gi|293192664|ref|ZP_06609618.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
 gi|292820171|gb|EFF79168.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
          Length = 722

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 144/379 (37%), Positives = 216/379 (56%), Gaps = 10/379 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LGL  +++ AV D G+  PTPIQ   IP +L+  DV GIAQTGTGKTA+F LP+L
Sbjct: 45  VTFASLGLPEEILAAVTDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLL 104

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
            I++     V+    L+L PTRELA Q A   E +         + +  G P+  Q   L
Sbjct: 105 AIVDADERNVQ---ALVLAPTRELAMQSAQAIEDFAARTARLDVVPVYGGSPYGPQIGAL 161

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA V++ TPGR++D   +G L ++++ +LV+DEAD ML MGF   ++ I S  P  R 
Sbjct: 162 KRGAQVVVGTPGRVIDLIEKGALDLSHVRMLVLDEADEMLRMGFAEDVETIASSAPDDRL 221

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK------CA 233
           T LFSATM   ++KV+   L++P ++ V+T SST +TI   +     ++           
Sbjct: 222 TALFSATMPAAIEKVAREHLKDPVKVAVSTESSTVDTIHQTYAVVPYKHKIGALSRVLAT 281

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
             Q + + Q+     I+F   + +V  +   L  +GF    I G++ Q  R +++   K 
Sbjct: 282 RAQHIKEGQEEADAAIVFVRTRADVEEVSLELSSRGFRAAGISGDVAQTERERMVERLKN 341

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G++ ++VA+D+AARGLD+  +  V NFDVP   E Y+HRIGRTGRAGR G+A T     +
Sbjct: 342 GSLDVLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTGRAGREGRALTFFTPRE 401

Query: 354 IKHIDAIEKLIEKKVDWLN 372
              +  IEKL   +++ + 
Sbjct: 402 HGRLRRIEKLTGTEMEEVE 420


>gi|154508882|ref|ZP_02044524.1| hypothetical protein ACTODO_01393 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798516|gb|EDN80936.1| hypothetical protein ACTODO_01393 [Actinomyces odontolyticus ATCC
           17982]
          Length = 722

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 144/379 (37%), Positives = 216/379 (56%), Gaps = 10/379 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LGL  +++ AV D G+  PTPIQ   IP +L+  DV GIAQTGTGKTA+F LP+L
Sbjct: 45  VTFASLGLPEEILAAVTDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLL 104

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
            I++     V+    L+L PTRELA Q A   E +         + +  G P+  Q   L
Sbjct: 105 AIVDADERNVQ---ALVLAPTRELAMQSAQAIEDFAARTARLDVVPVYGGSPYGPQIGAL 161

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA V++ TPGR++D   +G L ++++ +LV+DEAD ML MGF   ++ I S  P  R 
Sbjct: 162 KRGAQVVVGTPGRVIDLIEKGALDLSHVRMLVLDEADEMLRMGFAEDVETIASSAPDDRL 221

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK------CA 233
           T LFSATM   ++KV+   L++P ++ V+T SST +TI   +     ++           
Sbjct: 222 TALFSATMPAAIEKVAREHLKDPVKVAVSTESSTVDTIHQTYAVVPYKHKIGALSRVLAT 281

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
             Q + + Q+     I+F   + +V  +   L  +GF    I G++ Q  R +++   K 
Sbjct: 282 RAQHIKEGQEEADAAIVFVRTRADVEEVSLELSSRGFRAAGISGDVAQTERERMVERLKN 341

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G++ ++VA+D+AARGLD+  +  V NFDVP   E Y+HRIGRTGRAGR G+A T     +
Sbjct: 342 GSLDVLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTGRAGREGRALTFFTPRE 401

Query: 354 IKHIDAIEKLIEKKVDWLN 372
              +  IEKL   +++ + 
Sbjct: 402 HGRLRRIEKLTGTEMEEVE 420


>gi|281203069|gb|EFA77270.1| DEAD/DEAH box helicase domain-containing protein [Polysphondylium
           pallidum PN500]
          Length = 1147

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 209/378 (55%), Gaps = 5/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+ KP+ IQ + I  +++ HD    AQ+GTGKTA+F +  L 
Sbjct: 49  TFESMHLKDDLLRGIFGFGFEKPSAIQQRAILPIIKGHDTIAQAQSGTGKTATFSIGALQ 108

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+ P+ LIL PTRELA Q+       G   ++ V   +G        ++LE 
Sbjct: 109 SIDVS---VKSPQVLILSPTRELAQQIQKVLMALGGFMSVQVHAFVGQKTIAEDLRRLEA 165

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+LD  +R  L   +I++L++DEAD ML +GF   I ++   +P   Q +
Sbjct: 166 GVHIVSGTPGRVLDLISRKALATRHIKMLILDEADEMLGLGFQQQINDVYRYLPPATQIV 225

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+T ++  ++E F+ +P RI +     T E I+  FV+   +  K   L    +  
Sbjct: 226 LVSATLTQDVINMTEKFMTDPVRILLKRDELTLEGIKQFFVSVEKEEWKFGTLCD--IYD 283

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+V ++HG+++Q+ R +I+ +F+ G  ++++ 
Sbjct: 284 SLTITQAVIFCNTKQKVNILTDKMREANFTVASMHGDMEQKEREEIIKSFRSGENRVLIT 343

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V  V N+D+PN  ENYIHRIGR+GR GR G A   V   DI+ +  IE
Sbjct: 344 TDILARGIDVQQVSLVINYDLPNDRENYIHRIGRSGRFGRKGVAINFVKSSDIRILRDIE 403

Query: 362 KLIEKKVDWLNGDLSSLN 379
           +    ++D +      +N
Sbjct: 404 QFYSTQIDEMPLIFQLIN 421


>gi|254229148|ref|ZP_04922567.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262395499|ref|YP_003287352.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|151938233|gb|EDN57072.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262339093|gb|ACY52887.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
          Length = 419

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 153/421 (36%), Positives = 248/421 (58%), Gaps = 9/421 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++FADLG+  K++  + +   V PTP+Q K+IP VL+  ++   AQTGTGKTA+F LP++
Sbjct: 3   VNFADLGIEQKLIETLSNLNIVTPTPVQEKSIPHVLEGKNLLAAAQTGTGKTAAFGLPII 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++ +     P+ L+L PTRELA QV DN  +Y     L +  + GG     Q +KLE
Sbjct: 63  QTVQQKKLNGT-PQALVLVPTRELAQQVFDNLNQYSAQTELRIVCVYGGTSIGVQKRKLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+LI TPGR+LDH   G + ++   +LV+DEADRMLDMGF P +Q I   +P  +Q 
Sbjct: 122 EGADILIATPGRLLDHLFNGNVNISKTSMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQI 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    ++ ++   +++P  +EV+  ++TAET+       Y    K+   L   L 
Sbjct: 182 LLFSATFEKRIKTIAYKLMESPVEVEVSPANTTAETV---KQMVYPVDKKRKRELLAYLI 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  ++F   K+    L   L+  G    +I+G+  Q +R + L  FK+G ++ ++
Sbjct: 239 GSRNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++   + AI
Sbjct: 299 ATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLHAI 358

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEK---IDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           E L+++++  +WL G   +L   +E        + + + +   +  K      R K+ +S
Sbjct: 359 ENLLDQRLPQEWLAGFEPTLIEEVEPEKNGSGRRRSRSSEKRKLKAKLAIHKNRGKSRNS 418

Query: 416 Q 416
           +
Sbjct: 419 R 419


>gi|237785892|ref|YP_002906597.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758804|gb|ACR18054.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 823

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 136/360 (37%), Positives = 218/360 (60%), Gaps = 7/360 (1%)

Query: 14  CAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMP 73
            AV   G+  P+PIQ  TIP++ Q  DV G+AQTGTGKTA+F LP+L+ L++ + +   P
Sbjct: 167 RAVKKVGFETPSPIQAATIPILAQGRDVVGLAQTGTGKTAAFALPILSRLDRSQKK---P 223

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLERGADVLICTPGR 132
           + L+L PTRELA QVAD F+++  +      L I G   +  Q   L RGA +++ TPGR
Sbjct: 224 QALVLSPTRELALQVADAFQEFADHLGGVHVLPIYGGQSYGIQLSGLRRGAHIVVGTPGR 283

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           ++DH  RG L ++ ++ LV+DEAD ML+MGF   ++ I +  P  +QT LFSATM   ++
Sbjct: 284 VIDHLERGSLDLSELKYLVLDEADEMLNMGFQEDVERILADTPEHKQTALFSATMPASIR 343

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           ++S+ +L++P+ + + +   TA+ I   ++     Y          +   D M   I+F 
Sbjct: 344 RLSKQYLEDPREVTIKSQQRTADNIHQQYLLVNHHYKLDALTRILEVTEFDAM---IMFA 400

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             K+N   L   L  +GFS  AI+G++ Q  R + +   ++G + ++VA+D+AARGLD+ 
Sbjct: 401 RTKQNTEELAEKLRARGFSAAAINGDMAQNQRERTVDQLRDGRLDILVATDVAARGLDVE 460

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
            + HV N+D+P+  E+Y+HRIGRTGRAGR G+A   V   + + + +IE+  +  ++ + 
Sbjct: 461 RISHVVNYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRLLRSIERATKSSIEEMQ 520


>gi|288800406|ref|ZP_06405864.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332619|gb|EFC71099.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 641

 Score =  160 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 137/385 (35%), Positives = 221/385 (57%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F  LG+S ++  A+ + G+  PTP+Q + IP +L + +DV  +AQTGTGKTA++ LP++
Sbjct: 3   TFEMLGISEEIRQAIEELGFEHPTPVQEEVIPYLLGEGNDVIALAQTGTGKTAAYGLPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             +   +   +  + LIL PTREL  Q++D+   + K       + + G    E Q K L
Sbjct: 63  QKVNPQQ---KHTQALILSPTRELCLQISDSLSDFSKYIKGLTVVPVYGGTSIETQIKAL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G  +++ TPGR++D  +RG   + N+  +V+DEAD ML+MGF   I  I   VP  R 
Sbjct: 120 KKGTQIIVATPGRLIDLIHRGVAKLENVTNVVLDEADEMLNMGFSESINEILECVPKDRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+++++ N+L N K I V + +  AE++ H     Y   +K   L  + +
Sbjct: 180 TLLFSATMSKEIERIARNYLTNHKEIVVGSRNEGAESVNH---IYYMVNAKDKYLALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIFC  K+    +   L   G++  A+HG++ Q+ R   +  F++ T Q +
Sbjct: 237 VDYYPSIFAIIFCRTKRETQEIADKLIHDGYNAEALHGDLSQQQRDLTMQKFRKHTTQFL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV NF +P+  E+Y HR GRTGRAG+ G + +++   +   + A
Sbjct: 297 VATDVAARGLDVDDLTHVINFGLPDDIESYTHRSGRTGRAGKKGTSISIMHTRERSKMHA 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IEK+I K   ++ G++        K
Sbjct: 357 IEKVISKA--FVEGEIPDAKAICSK 379


>gi|291537820|emb|CBL10931.1| Superfamily II DNA and RNA helicases [Roseburia intestinalis XB6B4]
          Length = 535

 Score =  160 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 133/372 (35%), Positives = 206/372 (55%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P+V+ A+ + G+ + TPIQ + IP+V+   DV G AQTGTGKTASF +P+L  
Sbjct: 11  FDQLDLYPQVLRAIAEMGFEEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGIPVLHK 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    + ++    IL PTRELA QVAD   K  K  +    L +  G     Q K L+ 
Sbjct: 71  VDPNNKKTQVI---ILSPTRELAIQVADEIRKLAKYMHGVKILPVYGGQEISRQIKALKG 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA ++I TPGR++DH  R  +    +  +V+DEAD ML+MGF   I+ I   +P   +  
Sbjct: 128 GAQIIIGTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEYIPEEGRQT 187

Query: 182 L-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + FSATM   +  +++ +  +   I+V     T   I       Y    K    +   L 
Sbjct: 188 VLFSATMPKPILDITKKYQHDAVTIKVVKKELTVPNI---EQYYYDVKRKDKIEVLTRLL 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  ++FCN K+ V  L   L+ +G+    +HG++ Q  R +++  F+ G  ++++
Sbjct: 245 DYYNPKLSLVFCNTKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILI 304

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G+AFT V  +++  +  I
Sbjct: 305 ATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDI 364

Query: 361 EKLIEKKVDWLN 372
            +  + K+  + 
Sbjct: 365 MRYCKTKIVAMP 376


>gi|291537686|emb|CBL10798.1| Superfamily II DNA and RNA helicases [Roseburia intestinalis M50/1]
          Length = 530

 Score =  160 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 133/372 (35%), Positives = 206/372 (55%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P+V+ A+ + G+ + TPIQ + IP+V+   DV G AQTGTGKTASF +P+L  
Sbjct: 6   FDQLDLYPQVLRAIAEMGFEEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGIPVLHK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    + ++    IL PTRELA QVAD   K  K  +    L +  G     Q K L+ 
Sbjct: 66  VDPNNKKTQVI---ILSPTRELAIQVADEIRKLAKYMHGVKILPVYGGQEISRQIKALKG 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA ++I TPGR++DH  R  +    +  +V+DEAD ML+MGF   I+ I   +P   +  
Sbjct: 123 GAQIIIGTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEYIPEEGRQT 182

Query: 182 L-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + FSATM   +  +++ +  +   I+V     T   I       Y    K    +   L 
Sbjct: 183 VLFSATMPKPILDITKKYQHDAVTIKVVKKELTVPNI---EQYYYDVKRKDKIEVLTRLL 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  ++FCN K+ V  L   L+ +G+    +HG++ Q  R +++  F+ G  ++++
Sbjct: 240 DYYNPKLSLVFCNTKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G+AFT V  +++  +  I
Sbjct: 300 ATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDI 359

Query: 361 EKLIEKKVDWLN 372
            +  + K+  + 
Sbjct: 360 MRYCKTKIVAMP 371


>gi|260204506|ref|ZP_05771997.1| hypothetical protein MtubK8_09388 [Mycobacterium tuberculosis K85]
 gi|289573913|ref|ZP_06454140.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis K85]
 gi|289538344|gb|EFD42922.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis K85]
          Length = 563

 Score =  160 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 141/370 (38%), Positives = 213/370 (57%), Gaps = 9/370 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL + P+V+ A+ D GY  PT IQ  TIP ++   DV G+AQTGTGKTA+F +PML+
Sbjct: 14  TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-E 120
            ++      ++P+ L+L PTRELA QVA+ F +YG   +    L I G    A       
Sbjct: 74  KIDIT---SKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLR 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  R  L ++ ++ LV+DEAD ML MGF   ++ I S  P  +Q 
Sbjct: 131 RGAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPKYKQV 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++K+S  +L +P  +     ++ AE I   ++    +      +L+    
Sbjct: 191 ALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDALTRVLEVEPF 250

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K+    +   L  +GFS  AI G++ Q  R + ++  ++G I ++V
Sbjct: 251 EAM-----IVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  ++  + AI
Sbjct: 306 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAI 365

Query: 361 EKLIEKKVDW 370
           EK   + +  
Sbjct: 366 EKATRQTLTE 375


>gi|257413647|ref|ZP_04743689.2| ATP-dependent RNA helicase, DEAD/DEAH family [Roseburia
           intestinalis L1-82]
 gi|257202759|gb|EEV01044.1| ATP-dependent RNA helicase, DEAD/DEAH family [Roseburia
           intestinalis L1-82]
          Length = 553

 Score =  160 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 133/372 (35%), Positives = 206/372 (55%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P+V+ A+ + G+ + TPIQ + IP+V+   DV G AQTGTGKTASF +P+L  
Sbjct: 29  FDQLDLYPQVLRAIAEMGFEEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGIPVLHK 88

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    + ++    IL PTRELA QVAD   K  K  +    L +  G     Q K L+ 
Sbjct: 89  VDPNNKKTQVI---ILSPTRELAIQVADEIRKLAKYMHGVKILPVYGGQEISRQIKALKG 145

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA ++I TPGR++DH  R  +    +  +V+DEAD ML+MGF   I+ I   +P   +  
Sbjct: 146 GAQIIIGTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEYIPEEGRQT 205

Query: 182 L-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + FSATM   +  +++ +  +   I+V     T   I       Y    K    +   L 
Sbjct: 206 VLFSATMPKPILDITKKYQHDAVTIKVVKKELTVPNI---EQYYYDVKRKDKIEVLTRLL 262

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  ++FCN K+ V  L   L+ +G+    +HG++ Q  R +++  F+ G  ++++
Sbjct: 263 DYYNPKLSLVFCNTKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILI 322

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV  VFN+D+P   E Y+HRIGRTGRAGR G+AFT V  +++  +  I
Sbjct: 323 ATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDI 382

Query: 361 EKLIEKKVDWLN 372
            +  + K+  + 
Sbjct: 383 MRYCKTKIVAMP 394


>gi|15892943|ref|NP_360657.1| ATP-dependent RNA helicase RhlE [Rickettsia conorii str. Malish 7]
 gi|15620136|gb|AAL03558.1| ATP-dependent RNA helicase RhlE [Rickettsia conorii str. Malish 7]
          Length = 414

 Score =  160 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 144/427 (33%), Positives = 229/427 (53%), Gaps = 17/427 (3%)

Query: 1   MDF--ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           MD+   +  LS +++ A+      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP
Sbjct: 1   MDYIMKNFNLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           ++    K +         IL PTRELA Q+     K   +Y +  A+LIGG P   Q  +
Sbjct: 61  LIDSFIKNKTTAL-----ILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFIQ 115

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG    ++ I   +P  R
Sbjct: 116 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 175

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSATM   +  VS+ +L NP RI V   +  A  I+          S K       
Sbjct: 176 QVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQ----ESMHVSDKEKFSALT 231

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            Q  +   + IIF   K++   L   L+ +  +  AIHG++ QR R +++ +F++   ++
Sbjct: 232 KQLGNREGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRI 291

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +D+    
Sbjct: 292 MVATDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIRWR 351

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           AI++L+ K      G+ +  +      +  + +  ++     +K   FD  +K      S
Sbjct: 352 AIDRLVNK------GESTPRSEFRSDKNNRKRSFGKRAGGDGKKFNAFDSSRKRTFDGNS 405

Query: 419 HIPLKES 425
           +   ++ 
Sbjct: 406 YGNKRKK 412


>gi|315230959|ref|YP_004071395.1| cold-shock DEAD-box protein A [Thermococcus barophilus MP]
 gi|315183987|gb|ADT84172.1| cold-shock DEAD-box protein A [Thermococcus barophilus MP]
          Length = 389

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 143/396 (36%), Positives = 219/396 (55%), Gaps = 17/396 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           M F  LGLS   + AV   G+ +PT IQ + IPL L+   D+ G +QTGTGKTASF LP+
Sbjct: 8   MSFEKLGLSENTLGAVRRKGFSEPTDIQREVIPLFLRGDADIVGQSQTGTGKTASFALPL 67

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + ++ +    V+     IL PTRELA QVAD  +       + V  + GG P   Q + L
Sbjct: 68  VDVINEYEREVQAI---ILTPTRELALQVADEIKSLRGKKRIKVLSVYGGQPIGPQIRAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GA +++ TPGR+LDH  RG L ++ I+  ++DEADRMLDMGFI  I+ I    P  ++
Sbjct: 125 RKGAHIVVGTPGRVLDHIRRGTLRLDGIQYFILDEADRMLDMGFIDDIRAIFRETPRDKR 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  E+ K+++ +++  + I  ++       +E  ++                 
Sbjct: 185 VLMFSATMPREVLKLAKRYMKEYELIRTSSDEPVPNLVEQEYIEVVPARKISVLERILNS 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +       GI+FC  K+    L   L + G+S  A++G++ Q+SR + L  FK   I ++
Sbjct: 245 EFY-----GIVFCQTKRETRILAEKLARIGYSAEALNGDMSQKSRERALMRFKRRKINIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ D+ H+ N+ +P  AE YIHRIGRTGRAG+ GKA T +   + + +  
Sbjct: 300 VATDVAARGIDVQDITHIVNYSLPQNAEMYIHRIGRTGRAGKKGKAITFIMPGEYRRLRY 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           IE + +  +          +   E ID  +   +RK
Sbjct: 360 IENIAKVSIKK--------SKLQESIDREKRRDSRK 387


>gi|257066575|ref|YP_003152831.1| DEAD/DEAH box helicase domain-containing protein [Anaerococcus
           prevotii DSM 20548]
 gi|256798455|gb|ACV29110.1| DEAD/DEAH box helicase domain protein [Anaerococcus prevotii DSM
           20548]
          Length = 536

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 140/418 (33%), Positives = 228/418 (54%), Gaps = 18/418 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +  +++ A+ D GY KP+PIQ ++IP +L+ +D+ G +QTG+GKTA+F +P++
Sbjct: 1   MKFNELNIGNEILRAIDDLGYEKPSPIQEESIPHLLEGNDLIGKSQTGSGKTAAFAIPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKL 119
             +E       + + LIL PTREL  QV+   EK  K       L + G      Q K L
Sbjct: 61  ENIEAN----GITQALILCPTRELCIQVSKEIEKLYKYKKEIKILSVYGGSHIVRQIKSL 116

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G ++++ TPGR++D   R  L ++ ++ +V+DEAD M DMGF   ++ I       RQ
Sbjct: 117 KKGVEIVVGTPGRLMDLMRRKVLKLDQLKTVVLDEADEMFDMGFRDDMKFILDRTNPNRQ 176

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T  FSATM  E+Q+ S+ +  NP  +++ +   T + I+  ++       ++  +     
Sbjct: 177 TCFFSATMGPEIQEFSKLYQTNPYEVKIKSKEVTVDRIDQYYIKLKESMKEEALMRLL-- 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    I+FCN K+ V  L  SL K+ + V  +HG++ Q SR +++  F+  TIQ++
Sbjct: 235 -EIHKANLAIVFCNTKRKVDRLVESLTKKNYLVDGLHGDLKQSSRDQVMKKFRNKTIQIL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV  VFN+D+P   E Y+HRIGRT RAG+ G +F+L++  D   +  
Sbjct: 294 VATDIAARGLDVDDVDIVFNYDLPQLDEYYVHRIGRTARAGKSGLSFSLISGRDNNRLRQ 353

Query: 360 IEKLIEKKVDWLN----------GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           IE   +  +  +            DL  +     K+D  +     K+  I     G+D
Sbjct: 354 IENYTKANIKQMPVPTLVQMDRQSDLRLIEDISSKLDKNEDLSREKDILIRLMEKGYD 411


>gi|225452412|ref|XP_002273908.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1226

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 133/378 (35%), Positives = 208/378 (55%), Gaps = 2/378 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   G  P+++  V  AG+  PTPIQ ++ P+ LQ  D+  IA+TG+GKT  +++P   
Sbjct: 163 SFESTGFPPEIIREVYSAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFI 222

Query: 62  ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L++ R   +M P  L+L PTRELA Q+ D   K+G++  L+   L GG P   Q + L+
Sbjct: 223 HLKRIRNNPQMGPTVLVLSPTRELATQIQDEAVKFGRSSRLSCTCLYGGAPKGPQLRDLD 282

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGAD+++ TPGR+ D     ++ +  +  LV+DEADRMLDMGF P I+ I   VP  RQT
Sbjct: 283 RGADIVVATPGRLNDILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 342

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+++AT   E++K++ + L NP ++ +                    Y  +     + + 
Sbjct: 343 LMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKAITQYVEVLPY-MEKHKRLEQIL 401

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + II     K + +       + F   AIHG+  Q  R  +L+ F+ G   ++V
Sbjct: 402 RSQEPGSKIIIFCSTKKMCDQLARNLTRPFGAAAIHGDKSQGERDYVLNQFRTGRSPVLV 461

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G A+T  A++D K+   +
Sbjct: 462 ATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFAEQDAKYASDL 521

Query: 361 EKLIEKKVDWLNGDLSSL 378
            K++E     +  ++  +
Sbjct: 522 VKVLEGANQRVPPEIRDM 539


>gi|119776347|ref|YP_929087.1| ATP-dependent RNA helicase RhlB [Shewanella amazonensis SB2B]
 gi|189040038|sp|A1SAL1|RHLB_SHEAM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|119768847|gb|ABM01418.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis
           SB2B]
          Length = 439

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 142/432 (32%), Positives = 226/432 (52%), Gaps = 11/432 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L  +V  A+ + G+   TPIQ  ++P++L++ D+ G AQTGTGKT +F++    
Sbjct: 10  KFADLPLCDEVKQALNENGFEHCTPIQALSLPVLLEKKDIAGQAQTGTGKTLAFLVATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      ++  PR +++ PTRELA Q+A +     K+  L V ++ GG  +EAQ K
Sbjct: 70  HLLTTPVPEHRQLNQPRAIVMAPTRELAIQIAKDATLLSKHSGLKVGIVYGGEGYEAQRK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G DVLI T GRI+D+  +G + +  I+ +V+DEADRM D+GFI  I+ + + +P  
Sbjct: 130 VLDKGVDVLIGTTGRIIDYVRQGVINLGAIQAVVLDEADRMFDLGFIKDIRFLFNRMPGA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           ++ L    + T  ++     +      ++V        +        Y     K  L   
Sbjct: 190 KERLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSRNIKEEIFYPSMEDKLKL-LH 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +D  +  I+F N K    NL  SLE  G  V  + G++ Q+ R+KIL  F +  + 
Sbjct: 249 SLIEEDWPEKAIVFANTKYQCENLWASLEADGHRVGLLTGDVPQKKRLKILEQFTQSELD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG+ G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSL--NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            AIE  I+  +   + D  +L   PP  KI    H   R      +   G  R   ++ S
Sbjct: 369 PAIEDYIKHSIPVTSYDRDALIDIPPPVKIHRKPHAGGRNL----RDRNGSPRPSGSHRS 424

Query: 416 QKSHIPLKESEK 427
                P  +  +
Sbjct: 425 GSGRPPRHDRTR 436


>gi|294678037|ref|YP_003578652.1| ATP-dependent RNA helicase RhlE [Rhodobacter capsulatus SB 1003]
 gi|294476857|gb|ADE86245.1| ATP-dependent RNA helicase RhlE [Rhodobacter capsulatus SB 1003]
          Length = 448

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 175/465 (37%), Positives = 251/465 (53%), Gaps = 30/465 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL+P ++  +   G  KPTPIQ + IP +++  D+ G+AQTGTGKTA+F LPMLT
Sbjct: 3   TFENLGLAPMLLKNLAGLGLTKPTPIQAQGIPHIVRGRDILGLAQTGTGKTAAFGLPMLT 62

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +     R         +L PTRELA Q+ DN   Y +   + +  ++GG     Q +KL
Sbjct: 63  RILAYGKRPAPKTVRALVLAPTRELATQIHDNLAAYAEGAPVRIQRVVGGASLNVQAEKL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G DVLI TPGR++D   R  L+++  + LV+DEAD+MLD+GFI  ++ I  L+P  RQ
Sbjct: 123 SKGCDVLIATPGRLIDLIERRALVLSETKYLVLDEADQMLDIGFIHALRRIAKLIPAERQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   +++++ ++L +P R+EV TP   AE I+     T               
Sbjct: 183 TLLFSATMPKLMEELAASYLSDPIRVEVATPGKAAEKIDQGVHFTTQGEKAAL---LAEY 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+   +  ++F   K     L   LEK GFSV AIHGN  Q  R + LS F+   +Q++
Sbjct: 240 ISRHPGELAVVFNRTKHGSDKLTKLLEKWGFSVTAIHGNKSQGQRERALSAFRASEVQVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V HV+N+D+PN  ENY+HRIGRT RAGR G+A       ++  + A
Sbjct: 300 VATDVAARGLDIPQVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAVAFCGPLEMSDLRA 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE  +  K+  + G+               H     + P P +S    + KK +  Q   
Sbjct: 360 IEAAMGAKIPVIGGE--------------AHAEG-GSRPAPGRSG---QPKKPHRGQGPK 401

Query: 420 IPLKESEKISKLQQDIQENDADSLGFR--GNMPAFML--PKNRGK 460
            P +E E  +K  +      A   G R  G+ PA     PK   +
Sbjct: 402 -PAREGE--AKPARKPDAKPAAKRGGRAEGHAPAGGQAAPKRPAR 443


>gi|289705043|ref|ZP_06501454.1| putative ATP-dependent RNA helicase DeaD [Micrococcus luteus SK58]
 gi|289558206|gb|EFD51486.1| putative ATP-dependent RNA helicase DeaD [Micrococcus luteus SK58]
          Length = 715

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 148/374 (39%), Positives = 216/374 (57%), Gaps = 7/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL  +V+ AV + GY +P+PIQ  TIPL+L   DV G+AQTGTGKT +F LP L+
Sbjct: 49  TFLDLGLDARVLAAVEELGYTRPSPIQEATIPLLLDGRDVVGLAQTGTGKTGAFALPALS 108

Query: 62  I---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNK 117
                     R   P+ L+L PTRELA QVAD F+ Y K+ +    L +  G P+  Q  
Sbjct: 109 RLAETTDVNGRADTPQVLVLAPTRELALQVADAFDSYAKHLDDVSVLAVYGGSPYGPQLA 168

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RGA V++ TPGR++DH  RG L +++++ LV+DEAD ML MGF   +  I +  P T
Sbjct: 169 GLRRGAQVVVGTPGRVIDHLERGSLDLSDLQTLVLDEADEMLRMGFAEEVDRILASTPDT 228

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QT LFSATM   ++++S  +L  P+ + V   S+T+ TI   ++    Q+         
Sbjct: 229 KQTALFSATMPPAIRRISAQYLNAPEEVAVARQSTTSATIRQRYLQVGHQWK---FEALS 285

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I F   +     L   L + GF   AI G+I Q+ R K + + K G + 
Sbjct: 286 RILETEEHDGVIAFVRTRAGTEELAQKLTRAGFKAVAISGDIAQKQREKTVEDLKAGRVD 345

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  + HV N+D+P  AE+Y+HRIGRTGRAGR G A   +   +   +
Sbjct: 346 ILVATDVAARGLDVERISHVVNYDIPQDAESYVHRIGRTGRAGRQGDAVLFMTPRERFLL 405

Query: 358 DAIEKLIEKKVDWL 371
             IE+   ++V+ +
Sbjct: 406 KQIERTTRQQVEEM 419


>gi|328781103|ref|XP_394925.4| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Apis
           mellifera]
          Length = 626

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 123/422 (29%), Positives = 210/422 (49%), Gaps = 14/422 (3%)

Query: 2   DFAD-LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F     + P+++  +    +VKP+PIQ +  P++L   D+ GIAQTGTGKT +F+LP L
Sbjct: 214 TFEQAFEIYPEILDEIRKQKFVKPSPIQSQAWPILLSGRDLIGIAQTGTGKTLAFLLPAL 273

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +  R   + P  LI+ PT    A   +        + +    L GG   + Q  
Sbjct: 274 IHIEGQQIPRVERKGPNVLIMAPT-RELALQIEKEVNKYSYHGIKAVCLYGGGSRKKQVN 332

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +  G +++I TPGR+ D      L +++I  LV+DEADRMLDMGF P I+     +   
Sbjct: 333 VVTEGVEIVIATPGRLNDLVEAKILNISSITYLVLDEADRMLDMGFEPQIRKTLLDIRPD 392

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++ SAT    ++++++++++NP ++ V +            V    +  K   +  +
Sbjct: 393 RQTVMTSATWPQGVRRLAQSYMKNPIQVFVGSLDLATVHTVMQKVYIVDEEEKTDMMY-E 451

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             +        IIF  +K  V ++   L  Q  +  +IHG  +Q  R + L + K G +Q
Sbjct: 452 FFRKMSPNDKVIIFFGKKTKVDDVASDLALQSVNCQSIHGGREQSDREQALEDLKTGEVQ 511

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RG+DI D+ HV N+D P   E Y+HR+GRTGRAGR G++ T + ++D  H 
Sbjct: 512 ILLATDVASRGIDIEDITHVLNYDFPRDIEEYVHRVGRTGRAGRSGESITFMTRKDWTHA 571

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             +  ++E+    +  +L  +          +H   +      +     D+   N SS+ 
Sbjct: 572 KDLINILEEANQEVPEELYQM--------AERHKAWKGKRANDKHFERVDKYDYNRSSRN 623

Query: 418 SH 419
             
Sbjct: 624 RR 625


>gi|294139497|ref|YP_003555475.1| ATP-dependent RNA helicase SrmB [Shewanella violacea DSS12]
 gi|293325966|dbj|BAJ00697.1| ATP-dependent RNA helicase SrmB [Shewanella violacea DSS12]
          Length = 408

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 130/402 (32%), Positives = 218/402 (54%), Gaps = 7/402 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P ++ ++   G+ KPT IQ +TIPL +++ D+   A TGTGKTASF+LP +
Sbjct: 1   MLFEDFLLDPILLESLKAMGHNKPTTIQQQTIPLAMEQKDILARAPTGTGKTASFLLPAI 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L     R      + +L PTRELA+Q+         + +L +A++ GG+P+  Q   L
Sbjct: 61  QHLIDFPRRFGGQARVLVLTPTRELASQIHRYASHLSTDLDLDIAIITGGMPYGPQEDAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   D+L+ TPGR++++ ++G      +E+ VIDEADRMLDMGF   ++ +       +Q
Sbjct: 121 KNNVDILVATPGRLMEYLDKGNFNAEEVEVFVIDEADRMLDMGFSAAVETLAIESVGRKQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT+ +       +       ++V   +  +E  +       A   +    +   +
Sbjct: 181 TMLFSATL-EGSDVGRFSHQLLTNPVKVEAEAPRSEKAKIHQWIHIADNKEHKFAMLCNI 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+ +   I+F   ++ V +L   L+++G     + G+++Q+ R + L  F +G + ++
Sbjct: 240 LRQEDVTRTIVFVKTREGVASLEGLLQREGIICSFMRGDMEQKQRFQALGRFTKGEVNVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+ D+ HV NFD+P  A+ Y+HRIGRT RAG  G A +LV   DI+ +  
Sbjct: 300 LATDVAARGIDVDDISHVINFDMPRSADTYVHRIGRTARAGAKGTAISLVEAHDIRVVGK 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           IE+ I++ +      +  L P   K   A+     K  P P+
Sbjct: 360 IERYIDQVLKR--RFIKDLRP---KNKEAKPPGKNKVKPGPK 396


>gi|163750312|ref|ZP_02157553.1| ATP-dependent RNA helicase SrmB [Shewanella benthica KT99]
 gi|161329984|gb|EDQ00969.1| ATP-dependent RNA helicase SrmB [Shewanella benthica KT99]
          Length = 421

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 120/367 (32%), Positives = 207/367 (56%), Gaps = 2/367 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P ++ ++   G+ KPT IQ +TIPL +++ D+   A TGTGKTASF+LP +
Sbjct: 12  MLFEDFLLDPILLESLKAMGHKKPTTIQQQTIPLAMEQKDILARAPTGTGKTASFLLPAI 71

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +     R      + +L PTRELA+Q+           +L + ++ GG+P+  Q + L
Sbjct: 72  QHIIDFPRRFSGQARVLVLTPTRELASQIHRYASHLSTGLDLNIVIITGGMPYGPQEEAL 131

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   D+L+ TPGR++++ ++G      +E+ VIDEADRMLDMGF   ++ +       +Q
Sbjct: 132 KNNVDILVATPGRLMEYLDKGNFNAEEVEVFVIDEADRMLDMGFSAAVETLAIESVGRKQ 191

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT+ +       +       ++V   +  +E  +       A   +    +   +
Sbjct: 192 TMLFSATL-EGSDVGRFSHQLLTDPVKVEAEAPRSEKAKIHQWIHIADNKEHKFAMLCNI 250

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+ +   I+F   ++ V +L   L+++G +   + G+++Q+ R + L  F +G + ++
Sbjct: 251 LRQEDVTRTIVFVKTREGVASLEGLLQREGITCSFMRGDMEQKQRFQALGRFTKGEVSVL 310

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+ ++ HV NFD+P  A+ Y+HRIGRT RAG  G A +LV   DI+ +  
Sbjct: 311 LATDVAARGIDVDNISHVINFDMPRSADTYVHRIGRTARAGAKGTAISLVEAHDIRVVGK 370

Query: 360 IEKLIEK 366
           IE+ I++
Sbjct: 371 IERYIDQ 377


>gi|262377334|ref|ZP_06070558.1| II DNA/RNA helicase [Acinetobacter lwoffii SH145]
 gi|262307787|gb|EEY88926.1| II DNA/RNA helicase [Acinetobacter lwoffii SH145]
          Length = 624

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 142/473 (30%), Positives = 232/473 (49%), Gaps = 20/473 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  L   +  A+   G+  PTP+Q + IP  L+  D+   +QTG+GKTA+F+LP L 
Sbjct: 4   TFADFSLDESLTQALDALGFTTPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLN 63

Query: 62  ---------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                      +     V  P  L++ PTRELA QV  +   + ++        I G   
Sbjct: 64  ALANQDTLVPFKDRMKAVTQPNILVISPTRELAQQVCQDAIAFVRHMKGVRIAAIMGGMP 123

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             +  +  +GA V++ TPGR+LD  NR ++ ++ ++ L++DEADRMLD+GF   ++ I  
Sbjct: 124 FGKQIQQLKGAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEADRMLDLGFSEDLEAIGE 183

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L    +QTL+FSAT    +  ++E  + +P RI + T  ST   I      T     K  
Sbjct: 184 LAANRKQTLMFSATFAPRIITLAERMMNDPMRISIETGHSTNTDITQTLHWTDGFEHK-- 241

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L     +++ +   ++F + +++   L   L + G SV A+HG + Q  R + L + +
Sbjct: 242 KKLLTHWLNEEDVDQAVVFASTQEDTDMLAEELAEAGLSVVALHGAMPQTVRNRRLRSIR 301

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR GKA TL    
Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGKAITLATYR 361

Query: 353 DIKHIDAIEKLIEKKVDWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           +   I A+E  ++ +++    + L    PP             ++        G     +
Sbjct: 362 ERGKIRALEDFLDARLNVSEIEGLEPSPPPARGSRDGAGRGRGRDGGRRDGGRGGFGGGR 421

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            +  + +    +  +   +   D +         RG  PAF   + R    D+
Sbjct: 422 RFEGESNFKRREGGDDRPRRSFDDKP--------RGERPAFGEDRPRRDFGDR 466


>gi|215426565|ref|ZP_03424484.1| hypothetical protein MtubT9_09292 [Mycobacterium tuberculosis T92]
 gi|219557147|ref|ZP_03536223.1| hypothetical protein MtubT1_07530 [Mycobacterium tuberculosis T17]
 gi|260200303|ref|ZP_05767794.1| hypothetical protein MtubT4_09273 [Mycobacterium tuberculosis T46]
 gi|289442689|ref|ZP_06432433.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T46]
 gi|289569259|ref|ZP_06449486.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T17]
 gi|289749796|ref|ZP_06509174.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T92]
 gi|289415608|gb|EFD12848.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T46]
 gi|289543013|gb|EFD46661.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T17]
 gi|289690383|gb|EFD57812.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T92]
          Length = 563

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 141/370 (38%), Positives = 213/370 (57%), Gaps = 9/370 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL + P+V+ A+ D GY  PT IQ  TIP ++   DV G+AQTGTGKTA+F +PML+
Sbjct: 14  TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-E 120
            ++      ++P+ L+L PTRELA QVA+ F +YG   +    L I G    A       
Sbjct: 74  KIDIT---SKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLR 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  R  L ++ ++ LV+DEAD ML MGF   ++ I S  P  +Q 
Sbjct: 131 RGAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQV 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++K+S  +L +P  +     ++ AE I   ++    +      +L+    
Sbjct: 191 ALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDALTRVLEVEPF 250

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K+    +   L  +GFS  AI G++ Q  R + ++  ++G I ++V
Sbjct: 251 EAM-----IVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  ++  + AI
Sbjct: 306 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAI 365

Query: 361 EKLIEKKVDW 370
           EK   + +  
Sbjct: 366 EKATRQTLTE 375


>gi|254422154|ref|ZP_05035872.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335]
 gi|196189643|gb|EDX84607.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335]
          Length = 469

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 167/470 (35%), Positives = 251/470 (53%), Gaps = 43/470 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL  +++ A+ D GY  PTPIQ+++IPLV+  HDV   AQTGTGKTA F LP+L
Sbjct: 2   MSFESLGLRTEILRAIADQGYTDPTPIQVQSIPLVIAGHDVMASAQTGTGKTAGFTLPLL 61

Query: 61  TILEKGRARVRMPRTL------------------------------------ILEPTREL 84
             L +G      P                                       I+ PTREL
Sbjct: 62  QRLCEGLPLQTSPTRNQTSIRSDASRNGTSRPILRKRKGSVSRGDHRPIRALIVTPTREL 121

Query: 85  AAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLM 144
           AAQ+ +N   Y K   +   ++ GG+    Q  KL +G D+LI TPGR+LDH  +  + +
Sbjct: 122 AAQIGENVNAYSKYLPVRSTVIFGGVKINPQISKLRQGVDILIATPGRLLDHVGQRTVDL 181

Query: 145 NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKR 204
           + +E+LV+DEADRMLDMGFI  I+ I +LV   RQTLLFSAT +  ++K++++FL++PK 
Sbjct: 182 SQVEVLVLDEADRMLDMGFIHDIRKILALVSEERQTLLFSATFSKPIKKLADSFLRSPKT 241

Query: 205 IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHS 264
           IEV   ++TA+T++            +       +      +  ++F   K     L   
Sbjct: 242 IEVARQNATADTVDQVVYPVDRVRKSEL---LSFIIGSRNWQQVLVFTRTKHGANRLTKH 298

Query: 265 LEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPN 324
           L+K G +  AIHGN  Q +R + L+ FK   ++++VA+D+AARGLDI  + HV NF++PN
Sbjct: 299 LQKDGLTAAAIHGNKSQGARTRALAAFKARDVRVLVATDIAARGLDIDLLPHVVNFELPN 358

Query: 325 RAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV--DWLNGDLSSLNPPL 382
            AE+Y+HRIGRTGRAG  G+A +LV  ++   +  IE+L+ + +  + + G     + P 
Sbjct: 359 VAEDYVHRIGRTGRAGNEGQAVSLVCVDEKDLLRGIERLLRRDIPREVIPGYEPDPSIPP 418

Query: 383 EKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQ 432
           E I   ++N  R  +       G   R ++ S  K+  P      +   +
Sbjct: 419 EPIPNGRNNP-RGGSRSSNGGKGRQGRSRS-SRPKASRPSTSKPVLKGRR 466


>gi|31792446|ref|NP_854939.1| cold-shock DEAD-box protein A [Mycobacterium bovis AF2122/97]
 gi|121637182|ref|YP_977405.1| putative cold-shock dead-box protein a homolog deaD [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|215430135|ref|ZP_03428054.1| hypothetical protein MtubE_05528 [Mycobacterium tuberculosis
           EAS054]
 gi|224989657|ref|YP_002644344.1| putative cold-shock dead-box protein a homolog [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|260186187|ref|ZP_05763661.1| hypothetical protein MtubCP_09173 [Mycobacterium tuberculosis
           CPHL_A]
 gi|289446844|ref|ZP_06436588.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           CPHL_A]
 gi|289753325|ref|ZP_06512703.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis EAS054]
 gi|31618035|emb|CAD94146.1| PROBABLE COLD-SHOCK DEAD-BOX PROTEIN A HOMOLOG DEAD (ATP-dependent
           RNA helicase deaD homolog) [Mycobacterium bovis
           AF2122/97]
 gi|121492829|emb|CAL71300.1| Probable cold-shock dead-box protein a homolog deaD [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|224772770|dbj|BAH25576.1| putative cold-shock dead-box protein a homolog [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|289419802|gb|EFD17003.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           CPHL_A]
 gi|289693912|gb|EFD61341.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis EAS054]
          Length = 563

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 141/370 (38%), Positives = 213/370 (57%), Gaps = 9/370 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL + P+V+ A+ D GY  PT IQ  TIP ++   DV G+AQTGTGKTA+F +PML+
Sbjct: 14  TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-E 120
            ++      ++P+ L+L PTRELA QVA+ F +YG   +    L I G    A       
Sbjct: 74  KIDIT---SKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLR 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  R  L ++ ++ LV+DEAD ML MGF   ++ I S  P  +Q 
Sbjct: 131 RGAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQV 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++K+S  +L +P  +     ++ AE I   ++    +      +L+    
Sbjct: 191 ALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDALTRVLEVEPF 250

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K+    +   L  +GFS  AI G++ Q  R + ++  ++G I ++V
Sbjct: 251 EAM-----IVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  ++  + AI
Sbjct: 306 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAI 365

Query: 361 EKLIEKKVDW 370
           EK   + +  
Sbjct: 366 EKATRQTLTE 375


>gi|294661382|ref|YP_003573258.1| hypothetical protein Aasi_1916 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|227336533|gb|ACP21130.1| hypothetical protein Aasi_1916 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 575

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 144/367 (39%), Positives = 218/367 (59%), Gaps = 6/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++GLSP +  A+    + +PT IQ K IPL LQ+ D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFQEMGLSPVLTQALDKLSFTQPTAIQAKAIPLALQQKDILGSAQTGTGKTLAFAIPLIN 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L            LIL PTRELA QVA +  +   K+  +  ALLIGG P+  Q  +L 
Sbjct: 63  KLLSDPTS----MGLILTPTRELAQQVATNINQLLFKSSFIKTALLIGGEPYNKQLAQLR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR++DH  RG     +I+ L++DE DRM DMGF   ++ I S +P  RQT
Sbjct: 119 SNLRIIIGTPGRVIDHLERGSFNPKDIDFLILDETDRMFDMGFSIQLEQIVSQLPTQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT   +++K++  ++Q+P+RI +N    +   +         +  ++    + L Q
Sbjct: 179 LMFSATFPPKVEKLAAKYMQSPERIFMNE-FDSMAIVAQNLTQEILEIKEENKYFELLTQ 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F   K N  +L   L K+ ++ CAIHGN+ Q  R +++  F++G  Q+MV
Sbjct: 238 LNSREGTILVFVKTKDNAEHLSLRLNKEAYNTCAIHGNLRQTKRERVMRAFRQGRHQIMV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+P V HV N+D+P+  E+Y+HRIGRT RAG  G A + V+ +D K  +AI
Sbjct: 298 ATDIAARGLDVPHVKHVINYDIPHAPEDYVHRIGRTARAGAKGFALSFVSSQDRKRWNAI 357

Query: 361 EKLIEKK 367
           + L+  K
Sbjct: 358 QDLLNPK 364


>gi|156100409|ref|XP_001615932.1| helicase [Plasmodium vivax SaI-1]
 gi|148804806|gb|EDL46205.1| helicase, putative [Plasmodium vivax]
          Length = 528

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 136/425 (32%), Positives = 209/425 (49%), Gaps = 19/425 (4%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--E 64
           G    V+ ++ +   V PTPIQI+  P+ L   D+ G A+TG+GKT +F+LP    +  +
Sbjct: 119 GFPDYVLKSLKNNNIVTPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQ 178

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
                   P  L++ PTRELA Q+     K+     +      GG+P   Q   L++G  
Sbjct: 179 PSLKYGDGPIVLVMAPTRELAEQIRQECIKFSIESKIRNTCAYGGVPKSGQIYALKQGVH 238

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +LI  PGR++D   +    +  +  LV+DEAD+MLDMGF   I+ I   +   RQTL++S
Sbjct: 239 ILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFEIQIRKIVEQIRPDRQTLMWS 298

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT-YAQYSKKCALLQQLLQSQD 243
           AT   E+Q ++ +  +           +               ++ K   L   L +   
Sbjct: 299 ATWPKEVQSLARDLCKQQPIHVNVGSLTLTACRRIKQEIYLIEEHEKIANLKLLLQRIFR 358

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
                I+F   KKN   +  +L   G     IHG+  Q  R  +L++FK G   +++A+D
Sbjct: 359 DNDRIIVFVETKKNADFITKALRLDGVPALCIHGDKKQDERRWVLNDFKTGKSPILIATD 418

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +A+RGLDI DV +V NFD PN+ E+Y+HRIGRTGRAG HG +FT +  +  +    + K+
Sbjct: 419 VASRGLDIKDVKYVINFDFPNQIEDYVHRIGRTGRAGAHGASFTFLTSDKYRLARDLVKI 478

Query: 364 IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLK 423
           + +           + P LEKI     ++   NNP      G+ R   N +S    IPLK
Sbjct: 479 LRES-------EQPVPPQLEKI-----SYTAVNNPRRNPYYGYGRSSHNVNS----IPLK 522

Query: 424 ESEKI 428
            S + 
Sbjct: 523 GSNRY 527


>gi|118785473|ref|XP_314684.3| AGAP008578-PA [Anopheles gambiae str. PEST]
 gi|116127754|gb|EAA10198.3| AGAP008578-PA [Anopheles gambiae str. PEST]
          Length = 596

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 121/382 (31%), Positives = 185/382 (48%), Gaps = 6/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL  +V+  V  + Y KPTPIQ   IP++L   D+   AQTG+GKTA+F+LPM+ 
Sbjct: 175 SFERSGLREEVMTNVRKSSYTKPTPIQRYAIPIILNGRDLMACAQTGSGKTAAFMLPMIH 234

Query: 62  ILEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L         R R P  +I+ PTRELA Q+ D   K+     L V +  GG   + Q +
Sbjct: 235 HLLDKEDSLELRTRNPYIVIVAPTRELAIQIHDEGRKFAHGTKLKVCVSYGGTAVQHQLQ 294

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +  G  VL+ TPGR+LD  +RG +   N+  +V+DEADRMLDMGF+P I+ +       
Sbjct: 295 LMRGGCHVLVATPGRLLDFIDRGYVTFENVNFVVLDEADRMLDMGFLPSIEKVMGHATMP 354

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ- 236
            +    +   +       +          +                T     K     + 
Sbjct: 355 EKQQRQTLMFSATFPAEIQELAGKFLHNYICVFVGIVGGACADVEQTIHLVEKFKKRKKL 414

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + + +    K  ++F   K+N   L   + +  F   +IHG+  QR R   L +FK G +
Sbjct: 415 EEILNGGNPKGTLVFVETKRNADYLASLMSETQFPTTSIHGDRLQREREMALYDFKSGRM 474

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIK 355
            +++A+ +AARGLDI +V HV N+D+P   ++Y+HRIGRTGR G  G+A +    E D  
Sbjct: 475 DVLIATSVAARGLDIKNVNHVVNYDLPKSIDDYVHRIGRTGRVGNKGRATSFYDPEADRA 534

Query: 356 HIDAIEKLIEKKVDWLNGDLSS 377
               + K++ +    +   L  
Sbjct: 535 MASDLVKILTQAGQSVPDFLKD 556


>gi|65306809|gb|AAY41942.1| vasa-like protein [Anopheles gambiae]
          Length = 596

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 121/382 (31%), Positives = 185/382 (48%), Gaps = 6/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL  +V+  V  + Y KPTPIQ   IP++L   D+   AQTG+GKTA+F+LPM+ 
Sbjct: 175 SFERSGLREEVMTNVRKSSYTKPTPIQRYAIPIILNGRDLMACAQTGSGKTAAFMLPMIH 234

Query: 62  ILEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L         R R P  +I+ PTRELA Q+ D   K+     L V +  GG   + Q +
Sbjct: 235 HLLDKEDSLELRTRNPYIVIVAPTRELAIQIHDEGRKFAHGTKLKVCVSYGGTAVQHQLQ 294

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +  G  VL+ TPGR+LD  +RG +   N+  +V+DEADRMLDMGF+P I+ +       
Sbjct: 295 LMRGGCHVLVATPGRLLDFIDRGYVTFENVNFVVLDEADRMLDMGFLPSIEKVMGHATMP 354

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ- 236
            +    +   +       +          +                T     K     + 
Sbjct: 355 EKQQRQTLMFSATFPAEIQELAGKFLHNYICVFVGIVGGACADVEQTIHLVEKFKKRKKL 414

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + + +    K  ++F   K+N   L   + +  F   +IHG+  QR R   L +FK G +
Sbjct: 415 EEILNGGNPKGTLVFVETKRNADYLASLMSETQFPTTSIHGDRLQREREMALYDFKSGRM 474

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIK 355
            +++A+ +AARGLDI +V HV N+D+P   ++Y+HRIGRTGR G  G+A +    E D  
Sbjct: 475 DVLIATSVAARGLDIKNVNHVVNYDLPKSIDDYVHRIGRTGRVGNKGRATSFYDPEADRA 534

Query: 356 HIDAIEKLIEKKVDWLNGDLSS 377
               + K++ +    +   L  
Sbjct: 535 MASDLVKILTQAGQSVPDFLKD 556


>gi|19698881|gb|AAL91176.1| eukaryotic translation initiation factor [Arabidopsis thaliana]
          Length = 412

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 196/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F      
Sbjct: 40  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC---SG 96

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L++    +   + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 97  VLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 156

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 157 GVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 216

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 217 VFSATMPPEALEITRKFMSKPVRILVKRDELTVEGIKQFYVNVEKEEWKLETLCDL--YE 274

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 275 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 334

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V ++D + +  I+
Sbjct: 335 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 394

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     V+ L  +++ L
Sbjct: 395 KFYNVVVEELPSNVADL 411


>gi|89069624|ref|ZP_01156963.1| putative ATP-dependent RNA helicase protein [Oceanicola granulosus
           HTCC2516]
 gi|89044822|gb|EAR50922.1| putative ATP-dependent RNA helicase protein [Oceanicola granulosus
           HTCC2516]
          Length = 406

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 143/371 (38%), Positives = 218/371 (58%), Gaps = 6/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLSP++   + + G   PTPIQ + IP  L+  DV G+AQTGTGKTA+F LP++
Sbjct: 1   MTFENLGLSPRLAARLAEQGLTAPTPIQTQAIPHALEGRDVLGLAQTGTGKTAAFGLPLI 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFE-KYGKNYNLTVALLIGGIPFEAQNK 117
                    A       LIL PTRELAAQ+ D+     G   +  + L++GG    AQ  
Sbjct: 61  QALTAAGTHAAPNTVLALILAPTRELAAQIVDSLRAFAGNGGSPRIGLVVGGKSINAQAN 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+L+ TPGR++D  +R  L +     LV+DEAD+MLD+GFI  ++ I  L+P  
Sbjct: 121 ALRRGTDILVATPGRLIDLLDRKALTLGKARYLVLDEADQMLDLGFIHALRRIAPLLPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSATM  ++ +++  +L +P R++V+ P   A+ ++           +   +   
Sbjct: 181 RQTMLFSATMPKQMSEIAGAYLTDPVRVQVSPPGKPADKVDQSVHFVAKDAKQALLIDLL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                   +  ++F   K     L   L++ GF+  +IHGN  Q  R + L  F+EG ++
Sbjct: 241 ---DAHRDERALVFARTKHGAERLMKQLDRAGFAASSIHGNKSQGQRNRALDGFREGKVR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DIP VG+V+N+++PN  ENY+HRIGRT RAG  G+A     +E++  +
Sbjct: 298 VLVATDVAARGIDIPGVGYVYNYELPNVPENYVHRIGRTARAGADGRAVAFCGEEEMGEL 357

Query: 358 DAIEKLIEKKV 368
             IEK++ K +
Sbjct: 358 RDIEKVLGKPI 368


>gi|88603077|ref|YP_503255.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei
           JF-1]
 gi|88188539|gb|ABD41536.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei
           JF-1]
          Length = 531

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 133/372 (35%), Positives = 205/372 (55%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL LSP ++ A+ D GY +PTPIQ + IPL+L  +DV G A TGTGKTA+F +P + 
Sbjct: 5   SFSDLQLSPGIIKAIRDIGYEEPTPIQQEVIPLILAGNDVAGQAYTGTGKTAAFGIPAIE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
           + +     V+     +L P+RELA QV     K   +      L +  G P E Q K L 
Sbjct: 65  LCQPANRNVQTI---VLCPSRELAVQVGTELNKLAMHKKGISILPVYGGQPIERQIKALS 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  ++I TPGR++DH  R  LL++ + ++V+DEAD+MLDMGF   I+ I S +P  RQT
Sbjct: 122 RGVQIIIGTPGRVIDHIKRKTLLLDAVSLVVLDEADQMLDMGFREDIEEILSHIPKERQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT   E+  +S  F +NP             T+               A     + 
Sbjct: 182 VILSATFPPEILDISRRFQKNPI---DVKMVHQELTVPQIEQYYIEVREPAKADTLIRVL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  IIFCN +  V  +  +L+ +GF    +HG + Q  R K+++ F++G +++++
Sbjct: 239 EFYQPQRTIIFCNTQIAVDAVSSALKAEGFLADGLHGGMAQAQRDKVMNAFRKGQLEILI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++  V NFD P   E Y+HRIGRT RAGR G+A + V+  +   +  +
Sbjct: 299 ATDVAARGIDVEEIDLVCNFDFPQDDEYYVHRIGRTARAGRTGRAISFVSPRERYRLRDV 358

Query: 361 EKLIEKKVDWLN 372
            +    + + L 
Sbjct: 359 RRSTRAEPEPLP 370


>gi|60679730|ref|YP_209874.1| putative RNA helicase dead-box protein [Bacteroides fragilis NCTC
           9343]
 gi|253564478|ref|ZP_04841935.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5]
 gi|265764859|ref|ZP_06093134.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16]
 gi|60491164|emb|CAH05912.1| putative RNA helicase dead-box protein [Bacteroides fragilis NCTC
           9343]
 gi|251948254|gb|EES88536.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5]
 gi|263254243|gb|EEZ25677.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16]
 gi|301161192|emb|CBW20730.1| putative RNA helicase dead-box protein [Bacteroides fragilis 638R]
          Length = 647

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 136/385 (35%), Positives = 225/385 (58%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++
Sbjct: 14  TFEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI 73

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             +     + R+P++L+L PTREL  Q+A +   Y K  +    L + G    ++Q + L
Sbjct: 74  QKINV---KNRIPQSLVLCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSL 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD   R  + +  +  +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 131 KRGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTDSINAILADVPQERN 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+N+L N K I +   +   E+  +     Y  ++K      + +
Sbjct: 191 TLLFSATMSPEIARISKNYLHNAKEITIGRKN---ESTSNVKHVVYTVHAKDKYAALKRI 247

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   IQ++
Sbjct: 248 VDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNIQIL 307

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 308 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRE 367

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE++I KK  ++ G++ +     EK
Sbjct: 368 IERIIGKK--FIAGEMPTGKQICEK 390


>gi|53711460|ref|YP_097452.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46]
 gi|52214325|dbj|BAD46918.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46]
          Length = 636

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 136/385 (35%), Positives = 225/385 (58%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++
Sbjct: 3   TFEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             +     + R+P++L+L PTREL  Q+A +   Y K  +    L + G    ++Q + L
Sbjct: 63  QKINV---KNRIPQSLVLCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD   R  + +  +  +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KRGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTDSINAILADVPQERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+N+L N K I +   +   E+  +     Y  ++K      + +
Sbjct: 180 TLLFSATMSPEIARISKNYLHNAKEITIGRKN---ESTSNVKHVVYTVHAKDKYAALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   IQ++
Sbjct: 237 VDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNIQIL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRE 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE++I KK  ++ G++ +     EK
Sbjct: 357 IERIIGKK--FIAGEMPTGKQICEK 379


>gi|153002454|ref|YP_001368135.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS185]
 gi|160877173|ref|YP_001556489.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS195]
 gi|189040040|sp|A6WTD3|RHLB_SHEB8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040041|sp|A9L5D5|RHLB_SHEB9 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|151367072|gb|ABS10072.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|160862695|gb|ABX51229.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315269377|gb|ADT96230.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 438

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 135/419 (32%), Positives = 217/419 (51%), Gaps = 6/419 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P+V  A+ + G+   TPIQ  ++P++LQ  D+ G AQTGTGKT +F++     
Sbjct: 11  FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH 70

Query: 63  ----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR +I+ PTRELA Q+A +     K+ +L V ++ GG  ++ Q K 
Sbjct: 71  LLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYGGESYDVQRKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G D+LI T GRI+D+  +G + +N+I+ +V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPEAN 190

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L    + T  ++     +            +   +T ++     +    ++   L   
Sbjct: 191 QRLNMLFSATLSMKVQELAYDH-MNEPVKVEIAPEEKTSKNIKEEIFYPSQEEKMRLLLT 249

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +D  +  I+F N K +   L   LE  G  V  + G++ Q+ R++IL  F  G + +
Sbjct: 250 LIEEDWPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDI 309

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ 
Sbjct: 310 LVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFACEEYALNLP 369

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           AIE  I   +   N D  +L   +       H          +  +G  R     S  +
Sbjct: 370 AIESYINHSIPVSNYDSEALLADI-PTPAKIHRKHPSGTRNLRDRSGASRPGAQRSGAR 427


>gi|321456211|gb|EFX67324.1| hypothetical protein DAPPUDRAFT_302036 [Daphnia pulex]
          Length = 797

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 138/446 (30%), Positives = 223/446 (50%), Gaps = 14/446 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A  G+S K +  +    Y KPTPIQ +TIP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 134 WAQCGVSKKEMEILKKLAYEKPTPIQTQTIPAIMSGRDIIGIAKTGSGKTLAFLLPMFRH 193

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +           P  +I+ PTREL  Q+    +++ K+ NL V  + GG     Q  +L+
Sbjct: 194 ILDQPALEETDGPIAIIMSPTRELCLQIGKECKRFTKSLNLRVVTVYGGTGISEQIAELK 253

Query: 121 RGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D     N     +  +  +V+DEADRM DMGF P +  I       
Sbjct: 254 RGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNTRPD 313

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSAT   +++ ++   L  P  I V   S               +  +K   L +
Sbjct: 314 RQTVMFSATFPRQMEALARRILNKPVEITVGGRSVVCAD--VEQHVLVMEDEQKFLKLLE 371

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL       + ++F  ++++  +L   L K G+   ++HG IDQ  R   + +FK G I+
Sbjct: 372 LLGVYQEQGSVLVFVEKQESADDLLKDLMKAGYDCISLHGGIDQYDRDSAVVDFKNGKIK 431

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           LM+A+ +AARGLD+  +  V N+D PN  E+YIHR GRTGRAG  G A+T +  +  +  
Sbjct: 432 LMIATSVAARGLDVKHLILVVNYDCPNHHEDYIHRCGRTGRAGNKGFAYTFITPDQQRAA 491

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             I K +E+    +  +L +L    +    A+    R                     + 
Sbjct: 492 GDIIKAMEQSETPVPVELQTLWDQYKSKLAAEGKTVRSGGGGFSGKG-------FKFDES 544

Query: 418 SHIPLKESEKISKLQQDIQENDADSL 443
             + + E +K  K    +Q++D + +
Sbjct: 545 EAMAVSEKKKFQKAALGLQDSDEEDI 570


>gi|298704856|emb|CBJ28373.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 519

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 132/377 (35%), Positives = 209/377 (55%), Gaps = 3/377 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  +   V+  V+  G+  PTPIQ +  P+ L   D+ GI+ TG+GKT +F+LP +
Sbjct: 126 MTFEEASMPEYVLREVMKQGFSAPTPIQSQGWPMALLGRDMVGISATGSGKTLAFLLPAM 185

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       +   P  L++ PTRELA Q+ +  +K+G++  +    + GG+P   Q   
Sbjct: 186 IHINAQPYLEQGDGPIVLVVAPTRELAVQIKEECDKFGRSSEIKNTCVYGGVPKRIQVND 245

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG +++I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +   R
Sbjct: 246 LNRGVEIVIATPGRLIDLLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDR 305

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+Q ++ +FL +  ++ V +    A       +     ++K  +L + L
Sbjct: 306 QTLMWSATWPKEVQALARDFLHHYYQVTVGSLELAANKDIKQIIECTEDFNKYRSLSKHL 365

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            Q        ++F   KK    L  SL + G+    IHG+  Q  R  +L +FK G  Q+
Sbjct: 366 QQHGHNG-KVLVFVETKKGCDALTRSLRQDGYQARCIHGDKTQEERDYVLKDFKGGNFQV 424

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ D+  V NFD PN  E+YIHRIGR GRAG  G A +    ++ ++  
Sbjct: 425 LVATDVAARGLDVKDIQMVINFDFPNNMEDYIHRIGRCGRAGAKGVAVSFFGSKNSRNGR 484

Query: 359 AIEKLIEKKVDWLNGDL 375
            + K++ +  + +  +L
Sbjct: 485 ELIKILTESENHVPPEL 501


>gi|229591936|ref|YP_002874055.1| ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
 gi|229363802|emb|CAY51237.1| ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 456

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 195/368 (52%), Gaps = 1/368 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ AV +  +V+PTP+Q   IPL L+  D+   AQTG+GKTA+FVLP+L  
Sbjct: 10  FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPILNR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L          +TLIL PTRELA Q     E++ +   +   L+ GG  F+ Q   L + 
Sbjct: 70  LIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 129

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI TPGR+++  N G L +  +E+LV+DEADRMLDMGF   +Q + +     +QT+L
Sbjct: 130 PDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVAECINRQQTML 189

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT T                  +   + +            A ++     +   L + 
Sbjct: 190 FSAT-TGGSTLREMVAKVLNNPEHLQVNNVSDLNATTRQQIVTADHNVHKEQILNWLLAN 248

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T +  I+F N +     +   L  Q +    +HG  DQ+ R   +   K G ++++VA+
Sbjct: 249 ETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILVAT 308

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + +IE+
Sbjct: 309 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 368

Query: 363 LIEKKVDW 370
            +++  + 
Sbjct: 369 YLKQSFER 376


>gi|325119659|emb|CBZ55212.1| Eukaryotic initiation factor, related [Neospora caninum Liverpool]
          Length = 487

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 116/376 (30%), Positives = 186/376 (49%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF +  L  +++  + + G+ KP+PIQ ++IP+ L   ++   A+ GTGKTA+F +P+L 
Sbjct: 115 DFEEYFLRRELLMGIFEKGFEKPSPIQEESIPIALAGKNILARAKNGTGKTAAFSIPLLE 174

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             +      R  + LIL PTRELA Q +   +  GK+ N+   +  GG        +L  
Sbjct: 175 KCQTS---KRYIQGLILVPTRELALQTSAVVKAIGKHMNVQCMVSTGGTSLRDDIMRLYN 231

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL  TPGRILD  N+G   ++N  ++V+DEAD++L   F P ++ +   VP  RQ L
Sbjct: 232 PVHVLCGTPGRILDLANKGVADLSNCHMVVMDEADKLLSAEFQPIVEELIKFVPRERQIL 291

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           ++SAT    ++     F                 T++           ++       L S
Sbjct: 292 MYSATFPVTVKD----FKNKYLPDAHEINLMDELTLKGLTQYYAFVEERQKVHCLNTLFS 347

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 348 KLQINQAIIFCNSVTRVELLAKKITELGYSCFYIHARMMQSHRNRVFHDFRNGACRCLVS 407

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  L+  +D  ++  IE
Sbjct: 408 SDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINLITYDDRFNLYRIE 467

Query: 362 KLIEKKVDWLNGDLSS 377
             +  ++  +   +  
Sbjct: 468 SELGTEIQPIPSQIDE 483


>gi|225849264|ref|YP_002729428.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644065|gb|ACN99115.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 397

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 144/372 (38%), Positives = 217/372 (58%), Gaps = 6/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+S + + ++ D GY KPT IQ K IP VL   D+   AQTGTGKTA+F +P++ 
Sbjct: 5   TFKDLGISQETLKSLEDLGYSKPTEIQEKAIPAVLSGKDLVAQAQTGTGKTAAFGIPIVE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +   + +++    L+L PTRELA QVA   +  GKN  + V  + GG   + Q     +
Sbjct: 65  SVNTKQKKIQ---ALVLVPTRELAIQVAKEIKDLGKNKKVFVLSVYGGKSMKHQIDFLKK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V++ TPGR+ D   RG L ++N+++ V+DEADRML+MGFI  I++I S +P  RQ 
Sbjct: 122 GNDVVIVGTPGRVKDLLERGFLKLDNVKMFVLDEADRMLEMGFIEDIEDIMSYLPEDRQN 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+ ++++ FL    +     P           +      +K   L++  + 
Sbjct: 182 LLFSATMPKEILELAQEFLNEDYQTIKVKPDEITVEKIKQIIYRVDPKNKFNKLIE--VL 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ+  +  IIF   K     L   L K+GFSV AIHG+  Q+ R  +L NF+ G ++++V
Sbjct: 240 SQNQAEKTIIFTQTKLEADQLSEDLSKEGFSVSAIHGDFSQKKRETVLHNFRTGKLKILV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V N+ +P  AE+Y+HRIGRTGRAG+ G A ++    + K++  I
Sbjct: 300 ATDVAARGLDIKGVELVINYGLPKNAESYVHRIGRTGRAGKEGTAISIPTPSEDKYLQQI 359

Query: 361 EKLIEKKVDWLN 372
            +  +  ++ +N
Sbjct: 360 LQKTKANIEVIN 371


>gi|194759163|ref|XP_001961819.1| GF14739 [Drosophila ananassae]
 gi|190615516|gb|EDV31040.1| GF14739 [Drosophila ananassae]
          Length = 525

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 136/391 (34%), Positives = 222/391 (56%), Gaps = 7/391 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLGL+  +  A  +  +  P+ IQ + IP+ LQ  DV G+A+TG+GKT +F LP+L
Sbjct: 71  LTWKDLGLNDTLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 130

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      L+L PTRELA Q+ + FE  G +  +   +++GG+   AQ  +L 
Sbjct: 131 HALLENPQRFFA---LVLTPTRELAFQIGEQFEALGSSIGIKCCVVVGGMDMVAQGLQLA 187

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGR++DH    K     +I+ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 188 KKPHIIIATPGRLVDHLENMKGFNLKSIKYLVMDEADRILNMDFEVELDKILKVLPRERR 247

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L++P ++EV+    T E ++  ++       K   +    +
Sbjct: 248 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQYYLFIPV---KYKDVYLVHI 304

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK     ++
Sbjct: 305 LNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKDRSIL 364

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA TLV++ DI+    
Sbjct: 365 ISTDVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQR 424

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           IE L+ K++     +   +    E++  AQ 
Sbjct: 425 IEHLLGKQLPLYKCEEDEVMALQERVAEAQR 455


>gi|195588318|ref|XP_002083905.1| GD13105 [Drosophila simulans]
 gi|194195914|gb|EDX09490.1| GD13105 [Drosophila simulans]
          Length = 814

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 133/381 (34%), Positives = 213/381 (55%), Gaps = 3/381 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F + G    V+  +   G+ KPT IQ +  P+ +   D+ G+AQTG+GKT ++VLP +
Sbjct: 154 IEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAV 213

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA Q+     ++G N ++    + GG P   Q + 
Sbjct: 214 VHINNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARD 273

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 274 LERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDR 333

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCALLQQ 237
           Q L++SAT   E+++++E FL N  ++ + + S +A       V    +  K    +   
Sbjct: 334 QVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLL 393

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              S +     IIF   KK V  +  ++ +QG+  CAIHG+  Q+ R  +LS+F+ G   
Sbjct: 394 TDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHS 453

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    +    
Sbjct: 454 ILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKA 513

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
           + + +++ +    +N  L ++
Sbjct: 514 NDLIQVLREANQTINPKLMNM 534


>gi|91201977|emb|CAJ75037.1| similar to ATP-independent RNA helicase DbpA [Candidatus Kuenenia
           stuttgartiensis]
          Length = 407

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 139/426 (32%), Positives = 220/426 (51%), Gaps = 22/426 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DL LS  ++ A+   GY + TPIQ  T P++   HD+C +A+TG+GKTA+  +P++
Sbjct: 1   MKFSDLELSADILKALDKMGYNEMTPIQEATYPIIFAGHDLCALAETGSGKTAACAIPLI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     +   + L++ PTREL  Q  +   K     ++    + GG    AQ  +++
Sbjct: 61  QKVDPS---LDAIQGLVIVPTRELCMQYVEEIRKIAAKTDVIPYAVYGGFDRAAQIARVK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +L+ TPGR++D    G L    I+ +++DEAD +L +GF+  I+ I S +    QT
Sbjct: 118 QTVHILVATPGRLIDLLYEGILSFARIKCVILDEADELLKVGFLEDIEFILSCIRHKHQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D+++K++++ L  P+ I + T  S  E+IEH F        K+         
Sbjct: 178 LLFSATMPDDIKKLTQDCLHEPQYISLVTKRSAPESIEHYFSYVNP---KQKHEELVKYL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +   +IFCN +  V +L   L K    +  +H  + Q  R  I+  F+   I+ ++
Sbjct: 235 KGEEVNQALIFCNARHMVDSLFRLLRKDFHDIEYMHAGLAQDKRSSIIRRFRSQKIRYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+A RGLD   V HV N+D+P   E Y HR GR GR GR G AFTLVAK+D+  +  +
Sbjct: 295 ASDVAGRGLDFSHVSHVINWDMPRDGEQYTHRTGRAGRMGRKGIAFTLVAKKDLSLLSKV 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
               +    W+  +      P  +   ++    RK    P  +   DR+          I
Sbjct: 355 ISSRKISPCWIGKN------PFNEEARSRQRIPRKKINTPSPAPLQDRK----------I 398

Query: 421 PLKESE 426
           P KESE
Sbjct: 399 PEKESE 404


>gi|28574962|ref|NP_648062.2| CG10077, isoform A [Drosophila melanogaster]
 gi|20976828|gb|AAM27489.1| GH10652p [Drosophila melanogaster]
 gi|28380590|gb|AAF50635.2| CG10077, isoform A [Drosophila melanogaster]
 gi|220947070|gb|ACL86078.1| CG10077-PA [synthetic construct]
 gi|220960420|gb|ACL92746.1| CG10077-PA [synthetic construct]
          Length = 818

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 133/381 (34%), Positives = 213/381 (55%), Gaps = 3/381 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F + G    V+  +   G+ KPT IQ +  P+ +   D+ G+AQTG+GKT ++VLP +
Sbjct: 157 IEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAV 216

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA Q+     ++G N ++    + GG P   Q + 
Sbjct: 217 VHINNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARD 276

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 277 LERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDR 336

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCALLQQ 237
           Q L++SAT   E+++++E FL N  ++ + + S +A       V    +  K    +   
Sbjct: 337 QVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLL 396

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              S +     IIF   KK V  +  ++ +QG+  CAIHG+  Q+ R  +LS+F+ G   
Sbjct: 397 TDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHS 456

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    +    
Sbjct: 457 ILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKA 516

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
           + + +++ +    +N  L ++
Sbjct: 517 NDLIQVLREANQTINPKLMNM 537


>gi|313887420|ref|ZP_07821109.1| putative ATP-dependent RNA helicase RhlE [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332299626|ref|YP_004441547.1| DEAD/DEAH box helicase domain protein [Porphyromonas
           asaccharolytica DSM 20707]
 gi|312923062|gb|EFR33882.1| putative ATP-dependent RNA helicase RhlE [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332176689|gb|AEE12379.1| DEAD/DEAH box helicase domain protein [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 438

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 136/429 (31%), Positives = 222/429 (51%), Gaps = 8/429 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF +L L  +V+  +    +V+ +PIQ +TIP +L+  DV G AQTG+GKTA+++LP L
Sbjct: 1   MDFYELDLEDEVLDGLDAMNFVETSPIQSETIPPLLEGRDVIGCAQTGSGKTAAYLLPFL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + +          +++ PTRELA Q+    E +G   +++   + GG    A  ++  
Sbjct: 61  NKVARQELPKEHLGAVVMAPTRELAKQIDQEVEGFGYYVSVSTLAIYGGTDGIAWEQQRR 120

Query: 121 RG---ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                AD++I TPGR+L     G   +++++  V+DEADRMLDMGF   I  I   +P  
Sbjct: 121 GMALGADIVIATPGRLLSMLRLGACDLSHVQYFVLDEADRMLDMGFYEDIMEIYKALPED 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSATM  E+ K+SE+ L +P  +E+         ++  ++   AQ  K   +   
Sbjct: 181 CQHVMFSATMPKEILKLSESILVDPVLVELAVAKPPKSIMQTAYICYDAQ--KLPIIRSL 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               +  +   IIF   K  V  L  +L + G  V  +H ++ Q  R ++L +F+ G I+
Sbjct: 239 FTNPESEVSRTIIFAGTKATVHALAQTLSRDGLPVAEMHSDLSQERREEVLRDFRMGRIK 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKH 356
           ++VA+D+ ARG+DI D+  V N++VP   E+Y+HRIGRT R A   G A TLV+  D + 
Sbjct: 299 VLVATDIVARGIDIDDIAVVINYEVPRDFEDYVHRIGRTARGADGKGLAITLVSPSDQQD 358

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH--ARKNNPIPQKSTGFDRRKKNYS 414
              +E  +E+++  +  D S    P    +   ++   AR       +S G    + N  
Sbjct: 359 FARLEHFLEQEIYRIPLDPSLGEAPAYAPNERANSRGAARGKGNGRSRSQGKGNGRGNAQ 418

Query: 415 SQKSHIPLK 423
            +      K
Sbjct: 419 GKGRSSQRK 427


>gi|171685610|ref|XP_001907746.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942766|emb|CAP68419.1| unnamed protein product [Podospora anserina S mat+]
          Length = 798

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 149/464 (32%), Positives = 233/464 (50%), Gaps = 27/464 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ LS  ++  +   G+ KPTPIQ KTIP+ L   DV G A TG+GKT +F++P+L 
Sbjct: 274 SFLEMSLSRPILKGLNSVGFTKPTPIQSKTIPIALMGKDVVGGAVTGSGKTGAFLVPILE 333

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R +IL PTRELA Q      K   + ++   L +GG+  + Q ++L  
Sbjct: 334 RLLYRSKKVATTRVVILAPTRELAIQCHAVGVKLASHTDIKFCLAVGGLSLKVQEQELRL 393

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        +  +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 394 RPDVVIATPGRFIDHMRNSASFAVETVEILVLDEADRMLEDGFADELNEILTTLPKSRQT 453

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT  + ++    L  P RI+V++   TA  +   FV       KK       + 
Sbjct: 454 MLFSATMTSSVDRLIRAGLNKPVRIQVDSQKKTASNLRQEFVRLRPGREKKRMGYLVHIC 513

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  IIF  QKK            G S   +HG+++Q  R+  +  F++G +  ++
Sbjct: 514 KTLYTERVIIFFRQKKIAHETRIIFGLLGMSCAELHGSMNQAQRIASVEAFRDGKVNFLL 573

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLDI  V  V N++ P   E YIHRIGRT RAGR G A TL A+ D K + A 
Sbjct: 574 ATDLASRGLDIKGVDTVINYEAPQNLEIYIHRIGRTARAGRSGVALTLAAEPDRKVVKAA 633

Query: 361 E------------KLIEK--------KVDWLNGDLSSL---NPPLEKIDIAQHNHARKNN 397
                        ++IE         ++D + G++  +       +++   +    +  N
Sbjct: 634 VRAGKAQGAKITSRIIEASDADKWQDQIDEMEGEIKEIMQEEKEEKQLQQVEMQVKKGEN 693

Query: 398 PIPQKSTGFDRRKKNY---SSQKSHIPLKESEKISKLQQDIQEN 438
            I  +     R K+ +      K    L   E+++ +++ +++ 
Sbjct: 694 MIKYEEEIASRPKRTWFETQDDKRAAKLAGREELNGIREQLKKK 737


>gi|330794252|ref|XP_003285194.1| hypothetical protein DICPUDRAFT_7134 [Dictyostelium purpureum]
 gi|325084915|gb|EGC38333.1| hypothetical protein DICPUDRAFT_7134 [Dictyostelium purpureum]
          Length = 434

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 125/420 (29%), Positives = 202/420 (48%), Gaps = 10/420 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LG+ P+++ A   +G+ KP  IQ +TIP  L+  D+ G+AQTG+GKT +FV+P+L
Sbjct: 10  VTFESLGVHPQIIDACYRSGFKKPKEIQRETIPWALKGRDIIGLAQTGSGKTGAFVIPVL 69

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +    +      I                        T  L+ G        +  +
Sbjct: 70  QKLLEQPQGIF--CLCIAPTRELAFQIAEQFNALGATIGVKTCVLVGGIDSMTQSLQLAK 127

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      I    N     + +I+  ++DEADR+    F   + NI  ++P  R T
Sbjct: 128 KPHIIIGSPGRIIFHLENTKGFNLRSIKYFIMDEADRLFGADFEEEVNNILKVIPKERNT 187

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+    L NP +I+V T   T +T+   ++       K        + 
Sbjct: 188 FLFSATMTSKVAKLQRASLVNPVKIQVATKYQTVDTLIQQYLFIPF---KYKECYLVYIL 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      IIF +   +   +   L   G +   I+G++DQ  R+  LS FK+GT  ++V
Sbjct: 245 NELAGNLTIIFTSTCASSNKVTLMLRNLGLAAIPINGDMDQAKRLASLSKFKQGTKSILV 304

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V N+DVP  ++ YIHR+GRT RAG  G+A TLV + D++    I
Sbjct: 305 ATDVAARGLDIPMVDLVINYDVPTNSKEYIHRVGRTARAGNSGRAITLVTQYDVEMYQRI 364

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E +++KK+D       ++   LE++  A      K      K +G+    K+    +  I
Sbjct: 365 EFVLKKKLDEFPCQEDTVLIFLERVTQAVREATNK-----LKDSGYSSGDKSSGDAEGSI 419


>gi|90581476|ref|ZP_01237270.1| ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90437337|gb|EAS62534.1| ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 437

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 134/403 (33%), Positives = 208/403 (51%), Gaps = 10/403 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGL+P V+  + D G+   TPIQ   +P++L  HD+ G AQTGTGKT +F+     
Sbjct: 10  KFAELGLNPLVLKGLDDKGFHNCTPIQALALPVMLTGHDIAGQAQTGTGKTIAFLTATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +   PR +I+ PTRELA Q+ ++      +  L   L  GG P+E Q  
Sbjct: 70  HLLETAAPAHRKTNQPRAIIMAPTRELALQIYNDASSLIASTGLKAGLAYGGEPYEKQKA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G D+LI T GRI+D + +  + + +I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLDEGVDILIGTCGRIIDFYKQRVIDLASIQVVVLDEADRMFDLGFIKDIRFLFRRMPAP 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T   +     F       E        +T        +   +++   L Q
Sbjct: 190 SERLSLLFSATLSYRVKELAFEHMNS-PESVVVEPEQKTGHRIQEELFYPSNQEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++  +  IIF N K    ++   L   G  V  + G++ Q+ R +IL  F +G + 
Sbjct: 249 TLIEEEWPERAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVPQKKRERILDQFTKGDVD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+ AE+Y+HRIGRTGRAG  G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDAEDYVHRIGRTGRAGLSGHSISFACEEYAINL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKN 396
            AIE  IE  +     D    L  L  P+ ++        R+N
Sbjct: 369 TAIETYIEHGIPQSKYDSEALLDDLPAPI-RLQRNPRQGGRRN 410


>gi|322703237|gb|EFY94849.1| ATP-dependent RNA helicase drs-1 [Metarhizium anisopliae ARSEF 23]
          Length = 944

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 143/469 (30%), Positives = 233/469 (49%), Gaps = 27/469 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++  +   G+ KPTPIQ KTIP+ L   DV G A TG+GKT +F +P+L 
Sbjct: 257 SFQGMSLSRPILRGLAAVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTGAFFVPILE 316

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     ++   R ++L PTRELA Q  D   K  +  ++  +L +GG+  +AQ  +L  
Sbjct: 317 RLLFRPKKIPTTRVVVLTPTRELAMQCHDVGTKLARYTDIKFSLAVGGLSLKAQEVELRL 376

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D+++ TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 377 RPDIIVATPGRFIDHMRNSASFNVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQT 436

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT  + ++    L  P R+ V++   T  T+   FV        K       L 
Sbjct: 437 MLFSATMTSTVDRLIRVGLNKPVRLMVDSQKKTVTTLVQEFVRLRPGREDKRMGYLAHLC 496

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  IIF  QKK            G S   +HG+++Q  R+  +  F++G +  ++
Sbjct: 497 KTFYHERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQSQRISSVEAFRDGKVSYLL 556

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G A TL A+ D K + A 
Sbjct: 557 ATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRKGTAVTLAAEGDRKVVKAA 616

Query: 361 EKL--------------------IEKKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNN 397
            K                     +++++D +  ++  +        ++  A+    +  N
Sbjct: 617 VKAGKAQGAKITSRVIAPADADKLQEEIDGMEDEIDEIMQEEKEERQLAQAEMQVKKGEN 676

Query: 398 PIPQKSTGFDRRKKNYSSQ---KSHIPLKESEKISKLQQDIQENDADSL 443
            I  ++    R K+ +      K        ++++ L++ +++  +  L
Sbjct: 677 LIEHEAEIKSRPKRTWFETEHDKKKAKQAGKDELNGLRESLKKKGSGKL 725


>gi|260428461|ref|ZP_05782440.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
 gi|260422953|gb|EEX16204.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
          Length = 430

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 136/375 (36%), Positives = 220/375 (58%), Gaps = 5/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGL+P +  A+   G+ +PTPIQ + IPL L+ HDV G+AQTGTGKT +F LP++ 
Sbjct: 3   DFDMLGLAPTLSDALKRNGFSEPTPIQNQAIPLALEGHDVLGLAQTGTGKTLAFGLPLID 62

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               + G+   +  + L+L PTREL  Q+A++  +  +   L V  ++GG     Q   L
Sbjct: 63  ALLAQPGKPLPKTVKALVLAPTRELVNQIAESLRQLTEGTKLRVGTVVGGQSINRQINFL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR++D  +R  + ++    LV+DEAD+MLD+GFI  ++ I   +   RQ
Sbjct: 123 SRGTDILVATPGRLIDLMDRKSVDLSQTRQLVLDEADQMLDLGFIHALRKIAPKLGTPRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  +++++S  +L NP+R++V+      +  +    + +           + +
Sbjct: 183 TMLFSATMPKQMEELSAAYLTNPRRVQVSP---PGKAADKITQSVHFLGKDDKPRKLREV 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             QD     ++F   K     L   L   GF+  +IHGN  Q  R + +  F++G I ++
Sbjct: 240 LRQDLDALTLVFSRTKHGAERLMKGLVADGFNAASIHGNKSQGQRDRAIKAFRDGDINVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V +V N+D+P   +NY+HRIGRT RAGR G+A    A ++   +  
Sbjct: 300 VATDVAARGIDIPGVAYVVNYDLPEVPDNYVHRIGRTARAGREGEAIAFCAPDEADLLRQ 359

Query: 360 IEKLIEKKVDWLNGD 374
           I++L++ ++   +G+
Sbjct: 360 IQRLMKIEIPVASGE 374


>gi|108760847|ref|YP_634735.1| ATP-dependent RNA helicase DbpA [Myxococcus xanthus DK 1622]
 gi|108464727|gb|ABF89912.1| ATP-independent RNA helicase DbpA [Myxococcus xanthus DK 1622]
          Length = 461

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 138/380 (36%), Positives = 221/380 (58%), Gaps = 10/380 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF+ L LSP ++  + +  +   TPIQ ++IP++LQ  D+ G AQTG+GKTA+F LP+L
Sbjct: 1   MDFSALALSPPLLQVLEELDFKTATPIQAQSIPVLLQGRDLVGQAQTGSGKTAAFALPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKL 119
             ++    +V+    L+L PTREL AQVA    + G+       L++ GG P   Q + L
Sbjct: 61  QKVQLQHRKVQ---ALVLCPTRELCAQVAGEIRRLGRRLPGLQVLVLAGGQPIRPQLEAL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+GA + + TPGR++D  +R  L    +  +V+DEADRMLDMGF   ++ I   +P  RQ
Sbjct: 118 EKGAHLAVGTPGRVMDVLDREALETRQLSTVVLDEADRMLDMGFREDMERILGAMPPRRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT   +++ +S +F + P R+ V   ++  +  +  +             + +  
Sbjct: 178 TVLFSATFPPDIEALSRDFQRQPVRVTVEAATAGPDIQQVRYDCEPGDKQALLLRILR-- 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + I+FCN K  VV L  SL   G SV  + G+++Q  R ++++ F+  + +++
Sbjct: 236 --HYQPASAIVFCNLKATVVELKKSLSASGVSVDGLQGDLEQFERDRVMAKFRNQSTRVL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A RG+D+  +  V NFD+P +AE Y+HRIGRTGRAGR G A ++V   D + +D 
Sbjct: 294 IATDVAGRGIDVEALDAVINFDLPMQAEPYVHRIGRTGRAGRAGLAVSIVTPRDGRKVDD 353

Query: 360 IEKLIEKKVDWLNGDLSSLN 379
           I+     K++   GD+ SL 
Sbjct: 354 IQLATGVKLER--GDVESLP 371


>gi|328948067|ref|YP_004365404.1| DEAD/DEAH box helicase [Treponema succinifaciens DSM 2489]
 gi|328448391|gb|AEB14107.1| DEAD/DEAH box helicase domain protein [Treponema succinifaciens DSM
           2489]
          Length = 534

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 144/443 (32%), Positives = 233/443 (52%), Gaps = 18/443 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   ++  +  AGYV  TP+Q + +   L+  D+   +QTGTGKTA++ L  +
Sbjct: 1   MKFTEFSLHESLLQGIEGAGYVDCTPVQEQVLKSSLEGRDLYVQSQTGTGKTAAY-LTSV 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                 R      + L++ PTRELA QV +  +K  K  +L  A   GG+ ++ Q   L+
Sbjct: 60  IQELLTRGESAGKKALVMVPTRELAVQVQEEAQKLAKFTSLKCASFYGGVGYDKQVASLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS--LVPFTR 178
           +G D++I TPGR++D  +  ++ ++++  LVIDEADRM DMGF P ++ +         R
Sbjct: 120 KGVDIMIGTPGRVIDLNHGNQMDLSSVAFLVIDEADRMFDMGFYPDLRTLIKVLPSSEQR 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT+   ++ ++  + +NP  I +   + T + I       +   S     L   
Sbjct: 180 QTMLFSATLNSYVKNLAWEYTRNPAEITIAAENITVDEIAQ---ELFHVSSDDKMKLLLG 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S +  ++ I+FCN KK+   +   L+  GF    I G++ Q+ R+ I+  FK G I+ 
Sbjct: 237 IISHEKPESLIVFCNTKKSCEIVAKRLKMNGFESEFIIGDLPQKKRLTIMDKFKAGAIKC 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+  V N+D+PN AENY+HRIGRT RAG+ GKAFT  +++D+  + 
Sbjct: 297 LVATDVAARGIDVNDLAMVINYDLPNEAENYVHRIGRTARAGKSGKAFTFCSEQDVYSLP 356

Query: 359 AIEKLIEKKVDWLNGDLS------------SLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
            IE+ IEK +     D S             L+   E  +       R+     +K+   
Sbjct: 357 PIERYIEKSIPSCVADESMFAEDKSAGVYIKLDSYHEDYNDKSEFGRRRAAEYNRKNGNS 416

Query: 407 DRRKKNYSSQKSHIPLKESEKIS 429
           DRR+ +      +    E  K  
Sbjct: 417 DRRRSSKKGSGRYSSRNEEAKKE 439


>gi|288556690|ref|YP_003428625.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288547850|gb|ADC51733.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 487

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 140/419 (33%), Positives = 226/419 (53%), Gaps = 14/419 (3%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           ++ +S +V  A+    Y K T +Q K +P+ +   DV   AQTG+GKTA++ +P+   + 
Sbjct: 14  EIQISKEVQKALDLLNYKKLTNVQEKVVPVAIAEKDVIVKAQTGSGKTAAYAIPLCEKVI 73

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
               +   P+ L+L PTRELAAQV +     G+   +  A + G   +E Q  +L++   
Sbjct: 74  WEENK---PQALVLTPTRELAAQVKEEIINIGRFKRVKAAAVYGKQSYERQKIELKQKNH 130

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           ++  TPGR+LDH  +  L   NI  LVIDEAD+ML+MGFI  ++ I + +P  R T+LFS
Sbjct: 131 IVTGTPGRVLDHIEKNSLDTTNIRFLVIDEADQMLNMGFIDQVEAIIARIPANRVTMLFS 190

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT    ++++S+  +  P+ IE+N+  ++   I H   A     + +   + + +   + 
Sbjct: 191 ATFPYGVEELSKRHMSLPEYIEINSTEASRPNINH---AIIEVEADEKTDVLKKVLITEN 247

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             + IIFC  +  V  L  SL +  + V  +HG + Q  R  ++  FKEG  + +VA+ +
Sbjct: 248 PDSCIIFCQTQVEVDKLEKSLLRSQYPVEKLHGGMKQEDRFDVMDRFKEGAFRYLVATGV 307

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           A RG+D+ D+  V N+DVP   ENY+HRIGRTGRAG+ GKA TLV   +  +ID IE  I
Sbjct: 308 AGRGIDVADIDLVINYDVPAEKENYVHRIGRTGRAGKKGKARTLVTPSEHGYIDDIEDFI 367

Query: 365 EKKV--------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +++        + +   + +    L+K    + N A+K N    K      +KK   +
Sbjct: 368 GEQITRVPRPGKEEVKKAMKAFQIKLKKKPQLKENKAKKLNQDIMKLYFNGGKKKKLRA 426


>gi|148230348|ref|NP_001079703.1| similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA
           helicase, 68kDa) [Xenopus laevis]
 gi|28838521|gb|AAH47981.1| MGC53795 protein [Xenopus laevis]
          Length = 607

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 135/411 (32%), Positives = 215/411 (52%), Gaps = 3/411 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           ++F +      V+  +    + +PTPIQ +  P+ L   D+ G+A TG+GKT S++LP  
Sbjct: 90  LNFHEASFPANVMEVIKRLNFTEPTPIQGQGWPVALSGLDMVGVAMTGSGKTLSYLLPGI 149

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +    +    R   P  L+L PTRELA QV     +YG+   L    + GG P   Q + 
Sbjct: 150 VHINHQPFLQRGDGPILLVLAPTRELAQQVQQVAAEYGRACRLRTTCIYGGAPKGPQIRD 209

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +N    LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 210 LERGVEICIATPGRLIDFLEAGKTNLNRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 269

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL+    I +     +A       V       K   L++ +
Sbjct: 270 QTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCNDGEKDDKLVRLM 329

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+   +L   L + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 330 EEIMSEKENKTIVFVETKRRCDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFKHGKSP 389

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 390 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSSKTGTAYTFFTPGNIKQV 449

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           + +  ++ +    +N  L  L     +       + R++     K  G+ R
Sbjct: 450 NDLVSVLREANQAINPKLLQLVEDRGRFRGRGGMNDRRDRFSSGKRGGWGR 500


>gi|317128977|ref|YP_004095259.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315473925|gb|ADU30528.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 482

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 124/407 (30%), Positives = 193/407 (47%), Gaps = 11/407 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  +  A+    Y + T +Q + +PL L+  D+   + TG+GKTA+F +P+  
Sbjct: 5   QFTELGLSDVINKAIHALNYYELTDVQKEVLPLSLENKDLIVKSPTGSGKTAAFAIPICE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +         P+ L+L PTRELAAQV + F   G+   +    + G  PF+ Q  +L++
Sbjct: 65  QVTWDENS---PQALVLTPTRELAAQVKEEFMNIGRLKRIKALAIYGKQPFDRQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+LDH  +G L MN I+ LVIDEAD M + GF   + +I   +    +  
Sbjct: 122 KTHVVVGTPGRLLDHLQKGTLKMNKIKYLVIDEADEMFNRGFFDQVDSILKHLANYDKVT 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
              +    E  +                                 + +K  A   Q +  
Sbjct: 182 SIYSATISEAVEHISTRFMINPIKINIERKQINAHPISQSYVLVNKNAKFSA--IQDVTI 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + I+FC  + NV  L   L    +S   IHG + Q+ R  +++ FKEG  + +V 
Sbjct: 240 VENPDSCIVFCETQVNVDKLYKQLRDANYSCGKIHGGLPQKERFSVMNEFKEGKFRYLVT 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           ++LAARG+DI  +  V N+D+P   E Y+HR GRTGRAG  GKA T +  ++      IE
Sbjct: 300 TNLAARGIDIESISLVINYDMPLDKEVYVHRTGRTGRAGNKGKAITFITPDERILFREIE 359

Query: 362 KLIEKKVDWLNG----DLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
             I   +  +N     ++  L P  E  D  ++    K N   Q +T
Sbjct: 360 DYIGYAIPPMNIPSEREVERLKPAFE--DKMRNRPLTKRNKASQLNT 404


>gi|114561793|ref|YP_749306.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333086|gb|ABI70468.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 421

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 148/424 (34%), Positives = 230/424 (54%), Gaps = 19/424 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADL L P ++  + +  Y +PTPIQ++ IP++L   DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFADLSLHPILINRLAELKYQQPTPIQLQAIPVILSGKDVMAGAQTGTGKTAAFALPLL 60

Query: 61  T-----------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                         +           L+L PTRELA QV  + E+Y    ++T  ++ GG
Sbjct: 61  HQLLTHQDNLAAQPDTQHINSTPITALVLVPTRELAQQVHSSIEQYAYGSSVTSVMVYGG 120

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +    Q ++L  G  +L+ TPGR+LD   +  L ++ +  LV DEADRMLDMGF   I  
Sbjct: 121 VSIGEQIRQLANGTHILVATPGRLLDLLRKRALSLSQLTHLVFDEADRMLDMGFKDEIVE 180

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           +   +P TRQTLLFSAT+ D +   S   L++P+ IEV   ++TA +I        A   
Sbjct: 181 VLKRLPSTRQTLLFSATLDDRMLSFSRRLLRSPQVIEVAQRNTTASSIVERVFNVDANRK 240

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
                +   L +Q++    +IF   K+    L   +++ G +  A H ++ Q  R ++L+
Sbjct: 241 ---CAMLCHLITQESWLQSLIFSRTKQGADALVKQMKQAGVAAEAFHADLSQAVREQVLA 297

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G +  +VA+D+AARGLDI ++ +V N ++P + E+Y+HRIGRTGRAG+ G+A TL+
Sbjct: 298 AFKAGEVTALVATDVAARGLDINELNYVVNMELPFQVEDYVHRIGRTGRAGKAGQAITLL 357

Query: 350 AKEDIKHIDAIEKLIEKKV--DWL---NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           + +D   +  +E  +++++   WL     DL  + P   K   +      +   +   S 
Sbjct: 358 SIDDEPLLTKLEAFLDRRLPQQWLAGFEPDLDLIAPVTRKTTKSALKQQARKKALAASSR 417

Query: 405 GFDR 408
           G  R
Sbjct: 418 GKKR 421


>gi|206578204|ref|YP_002241152.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae 342]
 gi|288937791|ref|YP_003441850.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
 gi|290513187|ref|ZP_06552549.1| ATP-dependent RNA helicase RhlB [Klebsiella sp. 1_1_55]
 gi|226739540|sp|B5XYY9|RHLB_KLEP3 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|206567262|gb|ACI09038.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae 342]
 gi|288892500|gb|ADC60818.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
 gi|289774398|gb|EFD82404.1| ATP-dependent RNA helicase RhlB [Klebsiella sp. 1_1_55]
          Length = 421

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 133/390 (34%), Positives = 200/390 (51%), Gaps = 9/390 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P V+ A+   G+   TPIQ   +PL L+  DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPAVIEALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 TQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLLEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGNSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLE 383
            AIE  I   +     +    ++ L  PL 
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPLR 398


>gi|270011364|gb|EFA07812.1| hypothetical protein TcasGA2_TC005373 [Tribolium castaneum]
          Length = 1007

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 137/447 (30%), Positives = 230/447 (51%), Gaps = 15/447 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+S K +  +   G+ KPTPIQ++ IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 349 TWAQCGVSTKELNILKKLGFEKPTPIQVQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFR 408

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +     +  P  +I+ PTREL  Q+  + +K+ K+ NL    + GG     Q  +L
Sbjct: 409 HILDQPPLEELDGPIAIIMTPTRELCMQIGKDIKKFTKSLNLHAVCVYGGTGISEQIAEL 468

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D           +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 469 KRGAEIIVCTPGRMIDMLAANGGKVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRP 528

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   LQ P  ++V   S   +           +  +K   L 
Sbjct: 529 DRQTVMFSATFPRQMEALARRILQKPIEVQVGGRSVVCKD--VEQHVVILEEDQKFLKLL 586

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + I+F ++++N   L   L K  ++  ++HG IDQ  R   + +FK G +
Sbjct: 587 ELLGLYHEHGSIIVFVDKQENADILLKELMKAAYNCLSLHGGIDQFDRDSTIIDFKSGKV 646

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  E  ++
Sbjct: 647 KLLIATSVAARGLDVKHLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITPEQSRY 706

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I +  E     +   L +L    +     Q    +K +     S    +  +N ++ 
Sbjct: 707 AGDIIRAFELASVPIPDPLRAL---WDSYKSKQEAEGKKVHSGGGFSGKGFKFDENEAAA 763

Query: 417 KSHIPLKESEKISKLQQDIQENDADSL 443
                + E +K  K    + ++D + L
Sbjct: 764 -----VTERKKFQKAALGLADSDDEDL 785


>gi|195118551|ref|XP_002003800.1| GI21075 [Drosophila mojavensis]
 gi|193914375|gb|EDW13242.1| GI21075 [Drosophila mojavensis]
          Length = 515

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 139/436 (31%), Positives = 237/436 (54%), Gaps = 10/436 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + DLGL+  +  A  +  +  P+ IQ + IP+ LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 60  TWKDLGLNETLCKACEELKWKAPSKIQKEAIPVALQGKDIIGLAETGSGKTGAFALPILH 119

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R      L+L PTRELA Q+ + FE  G    +   +++GG+   AQ  +L +
Sbjct: 120 ALLENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAK 176

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K      I+ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 177 KPHIIIATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRT 236

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT +++K+    L++P ++EV+    T + ++  ++       K   +    + 
Sbjct: 237 FLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYIFIPV---KYKDVYLVHIL 293

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK     +++
Sbjct: 294 NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILI 353

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR G+A T+V + DI+    I
Sbjct: 354 STDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITMVTQYDIELYQRI 413

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+L+ K++     +   +    E++  AQ   A+      + S  +   K N  +    I
Sbjct: 414 EQLLGKQLPLYKCEEDEVMALQERVAEAQRT-AKLELKDLEDSKSYKGSKGNKRAALGDI 472

Query: 421 PLKESEKISKLQQDIQ 436
              +SE+ +  ++ ++
Sbjct: 473 --DDSEQFTGARKRMK 486


>gi|156554532|ref|XP_001605403.1| PREDICTED: similar to LOC556764 protein, partial [Nasonia
           vitripennis]
          Length = 595

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 125/380 (32%), Positives = 203/380 (53%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  +    + +PT IQ +  P+ L   D+ GIA TG+GKT S++LP + 
Sbjct: 159 TFEEAGFPEYVMREIKRQNFKEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPAIV 218

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       R   P  L+L PTRELA Q+    + +G +  +    L GG P  +Q + L
Sbjct: 219 HINSQPKLCRKDGPIALVLAPTRELAQQIQQVADDFGHSSGIKNTCLYGGAPKGSQARDL 278

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G +++I TPGR+LD    G+  +     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 279 DNGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 338

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQL 238
           TL++SAT   E++ ++E FL++  +I V +   +A       +    +Y K+        
Sbjct: 339 TLMWSATWPKEVKNLAEEFLKDYAQINVGSLQLSANHNILQIIDVCQEYEKEIKLSTLLK 398

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               +     I+F   K+ V  +   +++ G+    IHG+  Q+ R  +L +F+ G   +
Sbjct: 399 EIMAEKENKTIVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWVLQDFRSGKAPI 458

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ DV  V NFD P+ +E+Y+HRIGRTGR  + G A+T     +    +
Sbjct: 459 LVATDVAARGLDVEDVKFVINFDYPSCSEDYVHRIGRTGRRQKTGTAYTFFTPSNAGKAN 518

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + +++++    +N  L  L
Sbjct: 519 DLVQVLKEANQVINPKLLEL 538


>gi|328771154|gb|EGF81194.1| hypothetical protein BATDEDRAFT_87448 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 445

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 148/436 (33%), Positives = 238/436 (54%), Gaps = 12/436 (2%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           G+ P+++ A    G+ KP+ IQ  +IP+ L   D+ G+AQTG+GKTA+F LP+L  L   
Sbjct: 17  GIIPELIEACTTLGFKKPSDIQCASIPVALTGRDIIGLAQTGSGKTAAFALPILQTLFAN 76

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
               +     ++ PTRELA Q+++ FE  G    +  A+++GG+   +Q+  L +   V+
Sbjct: 77  ---PQHLYACVIAPTRELAFQISEQFEALGSVIGVRCAVIVGGMDMMSQSIALSKKPHVI 133

Query: 127 ICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           ICTPGR++DH    K     +++ LV+DEADR+LD+ F   I+ +  ++P  R T LFSA
Sbjct: 134 ICTPGRLVDHLENTKGFNLKHLKYLVMDEADRLLDLDFGAEIEKVLKVIPRERNTYLFSA 193

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           TMT +++K+    L NP ++EV T  ST +T+   +        K+       L ++ + 
Sbjct: 194 TMTSKVEKLQRASLVNPVKVEVATKYSTVDTLLQYYTFFPY---KQKECYLTYLLNELSG 250

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
           +  I+F     +   L   L   GF    +HG + Q  R+  L+ FK G   +++A+D+A
Sbjct: 251 QTCIVFTLTCASTQKLALMLRNLGFEAVCLHGQLTQPKRLGALAKFKSGGRNILIATDVA 310

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLDIP V  V N+DVP  +++YIHR+GRT RAGR GK+ TLV + D++    IE  I+
Sbjct: 311 SRGLDIPGVDVVINYDVPQSSKDYIHRVGRTARAGRSGKSITLVTQYDVEWYQRIEHAIQ 370

Query: 366 KKVDWLN--GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLK 423
           KK+       D S++    E++  A      +      K  G  R +   + Q+     +
Sbjct: 371 KKLTEYPFGHDKSAVLMLQERVSEAVRFAHMQLKDENLKHKGSKRGRGGDAEQRDD---E 427

Query: 424 ESEKISKLQQDIQEND 439
           ES      ++ I++ND
Sbjct: 428 ESAAKHLTKRKIKKND 443


>gi|157960228|ref|YP_001500262.1| ATP-dependent RNA helicase RhlB [Shewanella pealeana ATCC 700345]
 gi|189040044|sp|A8GZJ0|RHLB_SHEPA RecName: Full=ATP-dependent RNA helicase rhlB
 gi|157845228|gb|ABV85727.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 436

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 135/428 (31%), Positives = 227/428 (53%), Gaps = 12/428 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  L  +V  A+ +AG+   TPIQ  ++P++L++ D+ G AQTGTGKT +F++    
Sbjct: 10  KFADFPLHKEVHQALNEAGFEFCTPIQALSLPILLEKKDIAGQAQTGTGKTLAFLVATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      ++  PR +I+ PTRELA Q+A +     K+  L V ++ GG  +E Q K
Sbjct: 70  HLLSTPIPAERQLNQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGEGYEVQRK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+LI T GRI+D+  +G + ++ I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLDKGVDILIGTTGRIIDYVRQGVINVSCIQAVVLDEADRMFDLGFIKDIRFLFRRMPDA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +  L    + T  ++     +       E    +   +T ++     +    ++   L  
Sbjct: 190 KSRLNMLFSATLSMKVQELAYDH-MNEPEKVEIAPNEKTSKNIKEEIFYPSMEEKMPLLL 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +D  +  I+F N K +   +   LE  G     + G++ Q+ R++IL  F +G I 
Sbjct: 249 SLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRAGLLTGDVPQKKRLRILEQFTKGDID 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG+ G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPL---EKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            AIE  I+  +   + D    L  + PP+    K      N   +++  PQ       R+
Sbjct: 369 PAIESYIQHSIPVTSYDSDALLDDIPPPVRIHRKPSTHTRNTRDRSSGRPQGGQRNGPRR 428

Query: 411 KNYSSQKS 418
            + + + S
Sbjct: 429 HDKTRRHS 436


>gi|163755968|ref|ZP_02163085.1| putative ATP-dependent RNA helicase [Kordia algicida OT-1]
 gi|161324139|gb|EDP95471.1| putative ATP-dependent RNA helicase [Kordia algicida OT-1]
          Length = 411

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 139/387 (35%), Positives = 223/387 (57%), Gaps = 6/387 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F +L L+  ++ A+ +  Y +PT +Q + IP++L + D+   AQTGTGKTA++ LP+ 
Sbjct: 1   MQFKELKLNKPIIRALFEKNYEEPTLVQERAIPVILTKKDIIVSAQTGTGKTAAYALPIL 60

Query: 60  --LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L   +    + +  + L++ PTRELA Q+ +NF+ Y K  NL   ++ GG   E Q  
Sbjct: 61  QLLFDKQDAPKKGKKIKALVVCPTRELAIQIEENFQTYSKYTNLRTGVIFGGASIEPQKD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+L+ TPGR+LD   +  + ++ +EILV+DEAD MLDMGFI  ++ I  L P  
Sbjct: 121 MLKKGIDILVATPGRLLDLHKQDVVNLDYVEILVLDEADLMLDMGFIDDVKKIERLCPDG 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +Q LLFSATM  +++ ++ + L++P  +EV+  SS A+ ++            +  L   
Sbjct: 181 KQILLFSATMPYKVEHLANSILKSPAYVEVSPTSSAAKGVDQVLYYVPKPKKIELCLHLL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               +    N IIF   K  V  L  +L +  + V +IHG+  Q  R + L+ FK+G  +
Sbjct: 241 RNTIK---GNVIIFRRTKYGVDKLEKTLLRNNYKVASIHGDKSQNLRQEALNAFKKGEAK 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           + +A+D+AARG+DI +V  V NFD+PN +E Y+HRIGRT RAG  G A +  + ++  +I
Sbjct: 298 IFIATDVAARGIDIKNVDAVINFDIPNVSETYVHRIGRTARAGASGMALSFCSADEKNYI 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEK 384
             I++LI   +         L+P  + 
Sbjct: 358 KDIQQLINTTIHVEEDHPYPLDPKAKP 384


>gi|52842555|ref|YP_096354.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629666|gb|AAU28407.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 589

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 164/500 (32%), Positives = 263/500 (52%), Gaps = 44/500 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+    S  +  A+ D  ++ P+PIQ +TIPL+LQ  D   +AQTGTGKTA+F LP+L 
Sbjct: 7   NFSTFNFSNALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            L      +   + LIL PTRELA QVA+ FE   K   N+T+A+L GG  +  Q K+L 
Sbjct: 67  NL---SPEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGRILDH ++G LL+NN++  ++DEAD ML MGFI  ++ I   +P  +Q 
Sbjct: 124 SGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQM 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   +++++  +L +P  IE+   ++T ++IE  F+           +    ++
Sbjct: 184 ALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVLEVE 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   I+F   K +   +   L++ G    AIHG+I Q  R +I++ FK+G I ++V
Sbjct: 244 DYQGV---IVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV N+D+P+  E Y+HRIGRTGRAGR G     V  ++ + I +I
Sbjct: 301 ATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSI 360

Query: 361 EKLIEKKVDWLNGD-------------LSSLNPPL---------------------EKID 386
           E+   ++++ +                +S++   L                       +D
Sbjct: 361 ERHTRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVEEYIKEHDVSAVD 420

Query: 387 IAQHNHARKNNPIP-QKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGF 445
           +A       +  +P +K     +    +  +++    K  +   + ++D + + AD  G 
Sbjct: 421 VAAALALLLHKDMPWRKELNMPKAASAFKEERARAGEKGLDLRGRFKEDRKSSFADRKGA 480

Query: 446 RGNMPAFML--PKNRGKLND 463
           RG+   F       R K ND
Sbjct: 481 RGSKKDFAKDFSNERKKFND 500


>gi|83282276|ref|XP_729699.1| ATP-dependent RNA Helicase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23488233|gb|EAA21264.1| ATP-dependent RNA Helicase [Plasmodium yoelii yoelii]
          Length = 477

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 112/379 (29%), Positives = 187/379 (49%), Gaps = 8/379 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + GY KP+PIQ ++IP+ L   ++   A+ GTGKTA+F +P+L 
Sbjct: 98  EFEDYFLKRELLMGIFEKGYEKPSPIQEESIPVALAGKNILARAKNGTGKTAAFAIPLLE 157

Query: 62  ILEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                +     +     +LIL PTRELA Q +   ++ GK+  +   +  GG        
Sbjct: 158 KCNTHKNFIQGKTIQKISLILVPTRELALQTSAMIKELGKHMKIQCMVTTGGTSLREDIM 217

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L     +L  TPGRILD  N+    ++   I+V+DEAD++L   F P ++ +   +P  
Sbjct: 218 RLYNAVHILCGTPGRILDLANKDVANLSGCHIMVMDEADKLLSPEFQPIVEELMKFLPKE 277

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +Q L++SAT    +++    F Q               T++           ++      
Sbjct: 278 KQILMYSATFPVTVKE----FRQIYLSDAHEINLMDELTLKGITQYYAFVKERQKVHCLN 333

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L ++  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  +
Sbjct: 334 TLFAKLQINQAIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFRNGACR 393

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +V+SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  L+  ED  ++
Sbjct: 394 CLVSSDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINLITYEDRFNL 453

Query: 358 DAIEKLIEKKVDWLNGDLS 376
             IE  +  ++  +  ++ 
Sbjct: 454 YKIELELGTEIQPIPNEID 472


>gi|304414099|ref|ZP_07395467.1| DEAD-box RNA helicase [Candidatus Regiella insecticola LSR1]
 gi|304283313|gb|EFL91709.1| DEAD-box RNA helicase [Candidatus Regiella insecticola LSR1]
          Length = 635

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 133/378 (35%), Positives = 216/378 (57%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ A+ + GY KP+PIQ++ IP +L   DV G+AQTG+GKTA+F LP+L 
Sbjct: 15  SFTNLGLSDPILSALTNLGYKKPSPIQLECIPHLLNGCDVLGMAQTGSGKTAAFGLPLLH 74

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA-QNKKLE 120
            ++     ++ P+ L+L PTRELA QVA+   ++ K       + + G      Q + L 
Sbjct: 75  NIKA---EIKSPQILVLAPTRELAVQVAEALTEFSKYIKGVNVVALYGGQRYDLQLRALR 131

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR+LDH  RG L  + +  LV+DEAD ML MGFI  ++NI   +P   QT
Sbjct: 132 QGPQVVVGTPGRLLDHLKRGTLNPSKLSGLVLDEADEMLRMGFIEDVENIMKQIPAVHQT 191

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + +++++  F++ P+ I + +  +T   I   +         +         
Sbjct: 192 ALFSATMPEAIRRITRRFMKEPQEIRIQSSVTTRPDISQSYWMVDGMRKNEA---LVRFL 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K   + +  +LE  G++  A++G+++Q  R   L   K+G + +++
Sbjct: 249 ESEDFDAAIIFVRTKNATLEVAEALELNGYNSAALNGDMNQALRESTLERLKDGRLNILI 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  +E+Y+HRIGRTGRAGR G+A   V   + + +  I
Sbjct: 309 ATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEHRERRLLKNI 368

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+ ++  +  +    S L
Sbjct: 369 ERTMKLTIPEVKLPNSEL 386


>gi|269987038|gb|EEZ93313.1| DEAD/DEAH box helicase domain protein [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 435

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 132/442 (29%), Positives = 227/442 (51%), Gaps = 12/442 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L  +++ A+ +  + +PT +Q + IPL L+  DV   ++TG+GKTA+FV+P+L  
Sbjct: 2   FDSMNLRKEILTALHEMKFEEPTEVQKQAIPLELEGKDVVVKSKTGSGKTAAFVIPILNS 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +EK   +      +I+ PTRELA QV +   + G++  L    + GG     Q +++  G
Sbjct: 62  IEKNERQAA----MIITPTRELALQVTEVVREIGRHMQLKAVTIYGGASINYQIREIRNG 117

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+++I TPGR++D   R +L  ++I  LV+DE D MLDMGFI  I+ I S +P  RQT+ 
Sbjct: 118 ANIIIGTPGRLIDLMKRRELNTDSIRFLVLDEVDIMLDMGFIDDIKYILSKLPKKRQTMF 177

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ +E++ ++ N+  NP  + ++    T  TI+H +                   ++
Sbjct: 178 FSATIPEEIKHITLNYTNNPINVNIDAGEVTVNTIQHFYSIASGSDK---FATLLAYLNE 234

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  IIFC  ++N   +   ++  G     +HG + Q  R   L+ FKEG   L+  +
Sbjct: 235 KKPEKAIIFCKTQRNAEKIHSIMQNMGMQAVLMHGGLSQNRREHSLNMFKEGVNMLIATN 294

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
              ARGLDI +V  + NFD     + Y+HR+GR+ R G+ GKAFT+    +   +  IE 
Sbjct: 295 VA-ARGLDIDNVSDIINFDAETDPKAYVHRVGRSARMGKSGKAFTIFTHGEKYLVYEIEN 353

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR--KKNYSSQKSHI 420
             + K+ +L  DLS+    +   +  + N  ++     ++S     R  + N   ++   
Sbjct: 354 YAKVKLSYLEFDLSTYRTKMN--EFYKENGKQEFETALRRSNFSSNRNFRGNNPHRREFG 411

Query: 421 PLKESEKISKLQQDIQENDADS 442
                   SK ++D  +++   
Sbjct: 412 RSNNGGHYSKFKRDRFKHNYSK 433


>gi|160876752|ref|YP_001556068.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS195]
 gi|160862274|gb|ABX50808.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315268952|gb|ADT95805.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 419

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 135/387 (34%), Positives = 209/387 (54%), Gaps = 7/387 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F D  L P ++ ++   G+  PT IQ +TIP  L++ D+   A TGTGKTASF+LP +
Sbjct: 1   MQFEDFQLDPSLLESLNAMGHHSPTTIQQETIPSALEQRDILARAPTGTGKTASFLLPSL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +++  R      R LIL PTRELA+Q+            L +A++ GG+P+  Q + L
Sbjct: 61  QHLIDFPRRFAGQARILILTPTRELASQIHRYACHLATGQGLDIAIVTGGVPYGPQEEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+L+ TPGR++++ ++G      ++IL+IDEADRMLDMGF   +Q I       +Q
Sbjct: 121 AGNVDILVATPGRLMEYLDKGNFNAQEVDILIIDEADRMLDMGFSSVVQAIAIEAQGRKQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT+ +               IE++  +  +E  +       A   +    L   L
Sbjct: 181 NMLFSATL-EGGGVQRFAREVLNDPIEIDVEAPRSEKAKIHQWIHLADDKEHKFALLCHL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+ +K  I+F   +  V +L   L K G     + G+++Q+ R + LS F +G + ++
Sbjct: 240 LRQEDVKRTIVFVKTRDIVSSLEGQLLKVGIPCAFMRGDMEQKKRFQALSRFTKGEVNVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI D+ HV NFD+P  A+ YIHRIGRTGRAG  G A +L    D++ +  
Sbjct: 300 LATDVAARGIDIDDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGK 359

Query: 360 IEKLIEKK-----VDWLNGDLSSLNPP 381
           IE+ IE+      ++ L         P
Sbjct: 360 IERYIEQPLKRRVIEELRPKNKEARTP 386


>gi|145332383|ref|NP_001078148.1| EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1);
           ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|332641919|gb|AEE75440.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 402

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 196/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F      
Sbjct: 30  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC---SG 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L++    +   + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 87  VLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 147 GVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 207 VFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDL--YE 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 265 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V ++D + +  I+
Sbjct: 325 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 384

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     V+ L  +++ L
Sbjct: 385 KFYNVVVEELPSNVADL 401


>gi|18400210|ref|NP_566469.1| EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1);
           ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|1170503|sp|P41376|IF4A1_ARATH RecName: Full=Eukaryotic initiation factor 4A-1; Short=eIF-4A-1;
           AltName: Full=ATP-dependent RNA helicase eIF4A-1;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 4
 gi|16554|emb|CAA46188.1| eukaryotic translation initiation factor 4A-1 [Arabidopsis
           thaliana]
 gi|11994363|dbj|BAB02322.1| eukaryotic translation initiation factor; RNA helicase [Arabidopsis
           thaliana]
 gi|14594805|emb|CAC43288.1| translation initiation factor eIF-4A1 [Arabidopsis thaliana]
 gi|15293047|gb|AAK93634.1| putative Eukaryotic initiation factor 4A [Arabidopsis thaliana]
 gi|15450486|gb|AAK96536.1| AT3g13920/MDC16_4 [Arabidopsis thaliana]
 gi|20259055|gb|AAM14243.1| putative eukaryotic initiation factor 4A [Arabidopsis thaliana]
 gi|20466101|gb|AAM19972.1| AT3g13920/MDC16_4 [Arabidopsis thaliana]
 gi|22655066|gb|AAM98124.1| unknown protein [Arabidopsis thaliana]
 gi|23397033|gb|AAN31802.1| putative eukaryotic initiation factor 4A [Arabidopsis thaliana]
 gi|332641917|gb|AEE75438.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 412

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 196/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F      
Sbjct: 40  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC---SG 96

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L++    +   + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 97  VLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 156

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 157 GVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 216

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 217 VFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDL--YE 274

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 275 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 334

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V ++D + +  I+
Sbjct: 335 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 394

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     V+ L  +++ L
Sbjct: 395 KFYNVVVEELPSNVADL 411


>gi|320038649|gb|EFW20584.1| ATP-dependent rRNA helicase RRP3 [Coccidioides posadasii str.
           Silveira]
          Length = 474

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 135/430 (31%), Positives = 229/430 (53%), Gaps = 10/430 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +  A    GY  PT IQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 49  SFKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQ 108

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    L+L PTRELA Q++  FE  G   ++  A+++GG+   +Q   L +
Sbjct: 109 ALMD---KPQSMFGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGK 165

Query: 122 GADVLICTPGRI-LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+     N     + +++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 166 KPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPKERRT 225

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L NP R+  +  S+  +T+            K   +    L 
Sbjct: 226 YLFSATMSSKVESLQRASLSNPLRV--SVSSNKYQTVSTLLQNCLIIPHKHKDIYLIYLL 283

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ I+F         L + L   GF    +HG + Q +R+  L  F+  +  ++V
Sbjct: 284 NEFPGQSVIVFTRTVNETQRLANLLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILV 343

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V N+D+P+ ++ YIHR+GRT RAG+ G+AF+LV + D++    I
Sbjct: 344 ATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQRI 403

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI----PQKSTGFDRRKKNYSSQ 416
           E  + K++D    +   +    +++  AQ +   +   +     +K      R+    ++
Sbjct: 404 EAALGKELDEYKVEKEEVMVLSDRVGEAQRHAITEMKELHENRGKKGATLRNRRLGKGAK 463

Query: 417 KSHIPLKESE 426
           +S   +   E
Sbjct: 464 RSRDEMDREE 473


>gi|195443116|ref|XP_002069285.1| GK21047 [Drosophila willistoni]
 gi|194165370|gb|EDW80271.1| GK21047 [Drosophila willistoni]
          Length = 507

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 135/402 (33%), Positives = 223/402 (55%), Gaps = 7/402 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLGL+  +  A  +  +  P+ IQ + IP+ LQ  DV G+A+TG+GKT +F LP+L
Sbjct: 55  LTWKDLGLNETLCQACEELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPIL 114

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      L+L PTRELA Q+ + FE  G    +   +++GG+   AQ  +L 
Sbjct: 115 QALLENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 171

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGR++DH    K      I+ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 172 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 231

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L++P ++EV+    T E ++  ++       K   +    +
Sbjct: 232 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPV---KYKDVYLVHI 288

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK     ++
Sbjct: 289 LNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 348

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR G+A T+V++ DI+    
Sbjct: 349 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGRAITMVSQYDIELYQR 408

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           IE L+ K++     +   +    E++  AQ     +   I +
Sbjct: 409 IEHLLGKQLPLYKCEEDEVMALQERVAEAQRTAKLELKDIEE 450


>gi|189240548|ref|XP_973126.2| PREDICTED: similar to DEAD box ATP-dependent RNA helicase
           [Tribolium castaneum]
          Length = 984

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 137/447 (30%), Positives = 230/447 (51%), Gaps = 15/447 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+S K +  +   G+ KPTPIQ++ IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 326 TWAQCGVSTKELNILKKLGFEKPTPIQVQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFR 385

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +     +  P  +I+ PTREL  Q+  + +K+ K+ NL    + GG     Q  +L
Sbjct: 386 HILDQPPLEELDGPIAIIMTPTRELCMQIGKDIKKFTKSLNLHAVCVYGGTGISEQIAEL 445

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D           +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 446 KRGAEIIVCTPGRMIDMLAANGGKVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRP 505

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   LQ P  ++V   S   +           +  +K   L 
Sbjct: 506 DRQTVMFSATFPRQMEALARRILQKPIEVQVGGRSVVCKD--VEQHVVILEEDQKFLKLL 563

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + I+F ++++N   L   L K  ++  ++HG IDQ  R   + +FK G +
Sbjct: 564 ELLGLYHEHGSIIVFVDKQENADILLKELMKAAYNCLSLHGGIDQFDRDSTIIDFKSGKV 623

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  E  ++
Sbjct: 624 KLLIATSVAARGLDVKHLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITPEQSRY 683

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I +  E     +   L +L    +     Q    +K +     S    +  +N ++ 
Sbjct: 684 AGDIIRAFELASVPIPDPLRAL---WDSYKSKQEAEGKKVHSGGGFSGKGFKFDENEAAA 740

Query: 417 KSHIPLKESEKISKLQQDIQENDADSL 443
                + E +K  K    + ++D + L
Sbjct: 741 -----VTERKKFQKAALGLADSDDEDL 762


>gi|325676644|ref|ZP_08156320.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
 gi|325552534|gb|EGD22220.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
          Length = 453

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 151/373 (40%), Positives = 223/373 (59%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL +  +V+ A+ D GY  P+PIQ  TIP +L+  DV G+AQTGTGKTA+F +P+L
Sbjct: 15  ITFADLQIDERVLKALSDVGYESPSPIQAATIPTLLEGKDVVGLAQTGTGKTAAFAIPIL 74

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + L+  R   ++P+ LIL PTRELA QVA+ F KY  +      L I  G  +  Q   L
Sbjct: 75  SRLDVDR---KVPQALILAPTRELALQVAEAFGKYSAHIPGLQVLPIYGGQAYGVQLSGL 131

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR++DH  +G L ++N+E LV+DEAD ML MGF   ++ I +  P  +Q
Sbjct: 132 RRGAQIIVGTPGRVIDHLEKGTLDLSNLEYLVLDEADEMLKMGFQDDVERILADTPEYKQ 191

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   ++K+S+ +L +P  I V   ++TA  I   +V    Q           +
Sbjct: 192 VALFSATMPPAIRKISKQYLHDPVEITVKAKTATASNITQRWVQVAHQRKLDALTRILEV 251

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +S + M   IIF   K+   +L   L  +GFS  AI+G+I Q  R + +   K G + ++
Sbjct: 252 ESFEAM---IIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDIL 308

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   VA  +   + +
Sbjct: 309 VATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRTGDALLFVAPRERHLLKS 368

Query: 360 IEKLIEKKVDWLN 372
           IE+   + +  + 
Sbjct: 369 IERTTRQPLTEIQ 381


>gi|312138933|ref|YP_004006269.1| dead/deah box helicase [Rhodococcus equi 103S]
 gi|311888272|emb|CBH47584.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
          Length = 610

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 151/373 (40%), Positives = 223/373 (59%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL +  +V+ A+ D GY  P+PIQ  TIP +L+  DV G+AQTGTGKTA+F +P+L
Sbjct: 15  ITFADLQIDERVLKALSDVGYESPSPIQAATIPTLLEGKDVVGLAQTGTGKTAAFAIPIL 74

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + L+  R   ++P+ LIL PTRELA QVA+ F KY  +      L I  G  +  Q   L
Sbjct: 75  SRLDVDR---KVPQALILAPTRELALQVAEAFGKYSAHIPGLQVLPIYGGQAYGVQLSGL 131

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR++DH  +G L ++N+E LV+DEAD ML MGF   ++ I +  P  +Q
Sbjct: 132 RRGAQIIVGTPGRVIDHLEKGTLDLSNLEYLVLDEADEMLKMGFQDDVERILADTPEYKQ 191

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   ++K+S+ +L +P  I V   ++TA  I   +V    Q           +
Sbjct: 192 VALFSATMPPAIRKISKQYLHDPVEITVKAKTATASNITQRWVQVAHQRKLDALTRILEV 251

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +S + M   IIF   K+   +L   L  +GFS  AI+G+I Q  R + +   K G + ++
Sbjct: 252 ESFEAM---IIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDIL 308

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   VA  +   + +
Sbjct: 309 VATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRTGDALLFVAPRERHLLKS 368

Query: 360 IEKLIEKKVDWLN 372
           IE+   + +  + 
Sbjct: 369 IERTTRQPLTEIQ 381


>gi|197335121|ref|YP_002155200.1| ATP-dependent RNA helicase SrmB [Vibrio fischeri MJ11]
 gi|197316611|gb|ACH66058.1| ATP-dependent RNA helicase SrmB [Vibrio fischeri MJ11]
          Length = 413

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 129/385 (33%), Positives = 201/385 (52%), Gaps = 5/385 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL LSP ++ A+ +  Y +PT +Q  TIP  L+  D+   A TGTGK+A+F+LP L 
Sbjct: 4   TFADLDLSPNLLRALEEIDYQRPTQVQAMTIPEALEGKDILASAPTGTGKSAAFLLPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    R   P  + IL PTRELA QVAD   +  K     V  + GGI ++     L 
Sbjct: 64  HLDDFPRREPGPARILILTPTRELAIQVADEARQLAKYTRHKVFTITGGISYQDHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR++++    +     IE L++DEADRMLDMGF P +  ++    + +QT
Sbjct: 124 TTQDIVVATPGRLMEYIEAERFDCRAIETLILDEADRMLDMGFGPVVDRLSKECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LFSAT     ++  + + L  P  I         + I   +        K         
Sbjct: 184 FLFSATLEGRGVEGFTADLLNEPAEINAEPSRRERKKITQWYHRADNMAHKID---LLKS 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  +  I+F   ++ +  L   LE        I G + Q SR   ++ F++GT+ ++
Sbjct: 241 ILKEQAERSIVFVKTRERLAELRGHLETAKIPCAWIQGEMAQESRNNAIARFRDGTVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV NFD+P  A+ Y+HRIGRT RAG+ G A +L+   D   ++ 
Sbjct: 301 IATDVAARGIDLPDVSHVINFDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQPMMER 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           + + I++        +  L P  +K
Sbjct: 361 VGRYIKEDEIIKERFIEGLKPKHKK 385


>gi|328723043|ref|XP_001951330.2| PREDICTED: putative ATP-dependent RNA helicase me31b-like isoform 1
           [Acyrthosiphon pisum]
          Length = 446

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 111/375 (29%), Positives = 192/375 (51%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF +  L  +++  + + G+ KP+PIQ  +IP+ L   D+   A+ GTGKT ++ +P+L 
Sbjct: 58  DFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDILARAKNGTGKTGAYSIPVLE 117

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    ++ + + L++ PTRELA Q +    +  K+ ++ V +  GG   +    ++ +
Sbjct: 118 QVDP---KLDVIQALVIVPTRELALQTSQICIELAKHLDIRVMVTTGGTNLKDDILRIYQ 174

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGRILD  ++    +++  ILV+DEAD++L   F   + +I S +P  RQ L
Sbjct: 175 RVHVIIATPGRILDLLDKSIAKVDHCRILVLDEADKLLSQDFKGMLDHIISRLPSERQIL 234

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    +++    F+    R           T++           K+       L S
Sbjct: 235 LYSATFPLTVKQ----FMDKHLRSPYEINLMEELTLKGVTQYYAFVQEKQKVHCLNTLFS 290

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   +   G+    IH  + Q  R ++  +F++G+ + +V 
Sbjct: 291 KLQINQSIIFCNSTQRVELLAKKITDLGYCCYYIHAKMAQAHRNRVFHDFRKGSCRNLVC 350

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D   +  IE
Sbjct: 351 SDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYDDRFALHRIE 410

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 411 QELGTEIKPIPKVID 425


>gi|289668397|ref|ZP_06489472.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 460

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 160/437 (36%), Positives = 237/437 (54%), Gaps = 10/437 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+P ++ A+ + GY  PT IQ + IPLVL  HD+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLADHDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L      V  PR     IL PTRELA QV D+   Y K   +  A++ GG+    Q  
Sbjct: 61  QHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RG D+LI  PGR++DH  R  + ++ IE+L++DEADRMLDMGF+P I+ I + +P  
Sbjct: 121 ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180

Query: 178 RQTL-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +   LFSAT  + +++++  F++NP +I+V   ++ AE+I H          +   L  
Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               S+   +  ++F   K     L   LEK G    AIHGN  Q  RM+ LS+FK G +
Sbjct: 241 LAQDSR---EQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARG+DI  +  V N+D+P  AE+Y+HRIGRTGR G  G+A +LVA+++ K 
Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  I +++ + V+    D+    P    I        R   P   ++      ++ +   
Sbjct: 358 LRQIVRMLGRDVEI--RDVPGYEPQT-PIRWGNSAPGRAEQPGGDRAPRKSHARRPHGDA 414

Query: 417 KSHIPLKESEKISKLQQ 433
                     K    Q+
Sbjct: 415 PRQAHAHAGPKKPGGQR 431


>gi|238892385|ref|YP_002917119.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae NTUH-K2044]
 gi|238544701|dbj|BAH61052.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 421

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 132/390 (33%), Positives = 199/390 (51%), Gaps = 9/390 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P V+ A+   G+   TPIQ   +PL L+  DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPAVIEALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E       L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIADRQVNQPRALIMAPTRELAVQIHADAEPLALATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 TQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     I+F N K    ++   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLLEEEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLE 383
            AIE  I   +     +    ++ L  PL 
Sbjct: 369 PAIETYIGHSIPVSKYNPDALMTDLPKPLR 398


>gi|255541534|ref|XP_002511831.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223549011|gb|EEF50500.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 507

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 116/375 (30%), Positives = 196/375 (52%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 134 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 193

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++      + + +IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 194 KIDQDN---NVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQ 250

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P ++ +   +P TRQ L
Sbjct: 251 PVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPPTRQIL 310

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++   + FLQ P  I          T++           ++       L S
Sbjct: 311 MFSATFPVTVKDFKDRFLQKPYVI----NLMDELTLKGITQFYAFVEERQKVHCLNTLFS 366

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 367 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 426

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 427 TDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 486

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 487 QELGTEIKQIPPHID 501


>gi|5059027|gb|AAD38874.1|AF110007_1 p68 RNA helicase [Molgula oculata]
 gi|5059032|gb|AAD38877.1|AF110009_1 p68 RNA helicase [Molgula oculata]
          Length = 618

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 126/380 (33%), Positives = 202/380 (53%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    +   +   G+  PTPIQ    P  +  HD  GIA+TG+GKT +F+LP + 
Sbjct: 148 KFEEAGFPDYIYGTLSKQGFSDPTPIQAIGWPNAMSGHDCVGIAKTGSGKTLAFILPAIV 207

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA QV     ++G + ++    + GG     Q + L
Sbjct: 208 HINAQPYLDPGDGPIVLVLCPTRELAQQVQQVAAEFGSSSHIKNTCVYGGASKGPQLRDL 267

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG +++I TPGR++D   + K  +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 268 ERGCEIVIATPGRLIDFLEQKKTNLRRCTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQ 327

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+ K++ +FL +   ++V +   +A       V       K   L++ + 
Sbjct: 328 TLMWSATWPKEVSKLAADFLGDFVHVQVGSTGLSANHNILQIVDVCQPMEKDEKLMRLME 387

Query: 240 QSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   ++    IIF   K+    L  ++ + G+    IHG+  Q  R  +L+ F+ G   +
Sbjct: 388 EIMGESENKTIIFTETKRRCDELTRTMRRDGWPAMCIHGDKSQPERDWVLNEFRSGRSPI 447

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RGLD+ DV  V N+D P++ E+Y+HRIGRT RA + G A+T    ++ K   
Sbjct: 448 LVATDVASRGLDVSDVKFVINYDFPSQCEDYVHRIGRTARAEQKGTAYTFFTYDNAKQAK 507

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++++    +N  L  L
Sbjct: 508 DLIAILQEAKQAVNPKLMEL 527


>gi|291280174|ref|YP_003497009.1| ATP-dependent RNA helicase DEAD/DEAH box family [Deferribacter
           desulfuricans SSM1]
 gi|290754876|dbj|BAI81253.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Deferribacter
           desulfuricans SSM1]
          Length = 525

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 134/383 (34%), Positives = 218/383 (56%), Gaps = 9/383 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
           +F  LG+S  ++ A+   G+ +PT IQ   IP +L    D+   AQTGTGKTA+F +P++
Sbjct: 6   EFEKLGVSKSILEALKKKGFEEPTDIQKLVIPKILNSDKDIVAQAQTGTGKTAAFGIPLI 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ++++   +    + LIL PTRELA QVA+          L +  + GG   E Q K+L+
Sbjct: 66  EMIDR---KKSGVKCLILTPTRELANQVAEEINSLKGRRKLKIVPVYGGQSMELQLKRLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+++ TPGRILDH  R  L ++ I+  ++DEAD ML+MGFI  I+ I    P  R+ 
Sbjct: 123 EGADIVVGTPGRILDHLKRKSLDISKIDFFILDEADEMLNMGFIDDIKTIFRYTPENRRV 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+  +++ F+++ + I+V+    T    E  +     +   +     + + 
Sbjct: 183 LLFSATMPREILNLAKTFMKDYELIKVDAKQLTTSLTEQIYFEVREEDKFEALCRIRDMY 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +     G+IFC  K +V  + + L  +G++   +HG++ Q  R +IL  FK   I ++V
Sbjct: 243 PEFY---GLIFCRTKVDVDTVANKLIDRGYNAEGLHGDLSQYQRERILHKFKTKRINMLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++ HV N+ +P   E+Y+HRIGRTGRAG+ G A T V   + +++  I
Sbjct: 300 ATDVAARGIDIDNLTHVINYSLPQNPESYVHRIGRTGRAGKKGIAITFVTPSEYRNLLYI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
            ++   ++      L  +   +E
Sbjct: 360 MRISNTEIK--KEKLPDVEEIIE 380


>gi|224127608|ref|XP_002320116.1| predicted protein [Populus trichocarpa]
 gi|222860889|gb|EEE98431.1| predicted protein [Populus trichocarpa]
          Length = 485

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 113/375 (30%), Positives = 189/375 (50%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 112 DFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 171

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++        + +IL PTRELA Q +   ++ GK+  + V    GG   +    +L +
Sbjct: 172 KIDQDN---NFIQVVILVPTRELALQTSQVCKELGKHLKIQVMATTGGTSLKDDIMRLYQ 228

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P I+ +   +P +RQ L
Sbjct: 229 PVHLLVGTPGRILDLAKKGVCILKDCSMLVLDEADKLLSPEFQPSIEQLIRFLPSSRQIL 288

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++     F                 T++           ++       L S
Sbjct: 289 MFSATFPVTVKD----FKDRYLEKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFS 344

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 345 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 404

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 405 TDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 464

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 465 QELGTEIKQIPPHID 479


>gi|170038849|ref|XP_001847260.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167862451|gb|EDS25834.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 709

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 120/405 (29%), Positives = 212/405 (52%), Gaps = 13/405 (3%)

Query: 2   DFAD-LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F     + P+++  +  AG+VKP+PIQ +  P++L+  D+ GIAQTGTGKT +F+LP  
Sbjct: 292 TFEQAFHVWPELLEEIRKAGFVKPSPIQAQAWPVLLKGEDMIGIAQTGTGKTLAFLLPAF 351

Query: 61  TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKK 118
             ++ +   R +     +L         +    E     +    A+ + G      Q KK
Sbjct: 352 IHIDGQPVPRGQRGGPNVLVMAPTRELALQIEKEVQKYQFKGIKAICLYGGGDRRQQIKK 411

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +  G +++ICTPGR+ D  +   + + +I  LV+DEADRMLDMGF P I+ +   +   R
Sbjct: 412 VGEGVEIIICTPGRLNDLVSANVIDITSITYLVLDEADRMLDMGFEPQIRKLLLDIRPDR 471

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT++ SAT    ++++++++++NP ++ V T    A       +    +  K   ++   
Sbjct: 472 QTIMTSATWPPGVRRLAQSYMKNPVQVYVGTLDLAATHTVTQQIEVIDEEDKYVRVM-GF 530

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +++       IIFC +K    +L       G +  +IHG+ DQ  R + L + K G +++
Sbjct: 531 VKNMGKNDKAIIFCGRKTRADDLSSEFVLSGINCQSIHGDRDQADREQALEDIKSGDVRV 590

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + +   + D     
Sbjct: 591 LIATDVASRGLDIEDITHVVNYDFPRNIEEYVHRVGRTGRAGRTGISLSFFTRSDWAIAA 650

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
            + K++E+    +  ++ ++         A+   A+K     ++S
Sbjct: 651 ELIKILEEAEQDVPDEIRAM---------AERFAAKKERDNRERS 686


>gi|224064015|ref|XP_002301349.1| predicted protein [Populus trichocarpa]
 gi|222843075|gb|EEE80622.1| predicted protein [Populus trichocarpa]
          Length = 499

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 115/375 (30%), Positives = 188/375 (50%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 126 DFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCVPALE 185

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++        + +IL PTRELA Q +   ++ GK+  + V    GG   +    +L +
Sbjct: 186 KIDQDN---NFIQVVILVPTRELALQTSQVCKELGKHLKIQVMATTGGTSLKDDIMRLYQ 242

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ N  +LV+DEAD++L   F P I+ +   +P  RQ L
Sbjct: 243 PVHLLVGTPGRILDLAKKGVCILKNCSMLVLDEADKLLSPEFQPSIEQLIRFLPSNRQIL 302

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++     F                 T++           ++       L S
Sbjct: 303 MFSATFPVTVKD----FKDRYLEKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFS 358

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 359 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 418

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 419 TDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 478

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 479 QELGTEIKQIPPHID 493


>gi|325179957|emb|CCA14359.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 843

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 138/459 (30%), Positives = 232/459 (50%), Gaps = 24/459 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  LS  ++ A+      KPT IQ   IP+ L   D+C  AQTG+GKTA+F+LP+L 
Sbjct: 217 TFADFKLSRPILRALNQMELTKPTLIQEYAIPMALLGKDICASAQTGSGKTAAFLLPILE 276

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    R+   R +I+ P RELA Q      K  +  ++T AL++GG+P +AQ  +L  
Sbjct: 277 RLQLRTRRIAATRVIIICPVRELATQCQSVLIKLARFTDITSALVVGGLPLKAQELELRT 336

Query: 122 GADVLICTP-GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D+++CTP   I    N   + ++++EILV+DEADR+L++GF   IQ I  + P  RQT
Sbjct: 337 CPDIIVCTPGRMIDHLRNSPSVHLDSLEILVLDEADRLLELGFTEEIQEIVRMCPRARQT 396

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT ++ ++    ++ P RI  +     ++ +   FV            +   L 
Sbjct: 397 MLFSATMTSKIDQLIALSMKRPVRICADPLYDMSKHLVQEFVRIRPNREADRDAILLALC 456

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   +  I+F   K +   +       G     +HGN+ Q+ R+  L  F++G + +++
Sbjct: 457 TRAFTQKTIVFMETKVHAHRMMILFGLSGIKAAELHGNLTQQERLDALEKFRQGAVDILL 516

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+D+  V  V N+++P     Y+HR+GRT RAG+ G+A TL ++     +  +
Sbjct: 517 CTDVAARGIDVKGVRAVINYEMPKDITTYVHRVGRTARAGQVGRAVTLTSEYRRLIMKQV 576

Query: 361 EKLI-----------------EKKVDWLNGDLSSLNPPLEKIDIAQHN----HARKNNPI 399
            +                   + K+  L  D++ +    EK++   HN      R  N I
Sbjct: 577 TRHCHGFAKSRAVPDSVITQWKAKIQSLQQDITHILTE-EKVEKRMHNVEKEARRAQNLI 635

Query: 400 PQKSTGFDRRKKN-YSSQKSHIPLKESEKISKLQQDIQE 437
             +     R  +  + S+K    ++E+  I +L+    E
Sbjct: 636 SYQDEITSRPARTWFVSEKEKKKIQENAAIQRLEDQSAE 674


>gi|307202009|gb|EFN81574.1| Probable ATP-dependent RNA helicase DDX17 [Harpegnathos saltator]
          Length = 724

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 142/445 (31%), Positives = 224/445 (50%), Gaps = 11/445 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +      V+  +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP    
Sbjct: 110 FEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPATVH 169

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  LIL PTRELA Q+      +G +  +    + GG P   Q + LE
Sbjct: 170 INHQPRLSRGDGPIVLILAPTRELAQQIQTVARDFGSSSCIRNTCIFGGSPKGPQARDLE 229

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 230 RGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 289

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLL 239
           L++SAT   E+Q ++E+FL +  +I + + +  A       V    ++ K+         
Sbjct: 290 LMWSATWPKEVQALAEDFLTDYIQINIGSLTLAANHNIRQIVEICQEHEKETKLSQLLRE 349

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   KK V ++  +++++G+S  +IHG+  Q  R  +LS F+ G   ++
Sbjct: 350 IGTERGSKMIIFVETKKKVDDITKAIKREGWSAISIHGDKSQPERDYVLSEFRNGKTMIL 409

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV +V NFD PN +E+YIHRIGRTGR    G A+      + +    
Sbjct: 410 VATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNNARQAKE 469

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS---- 415
           +  ++E+    +N  L+ +   +   +       R ++    K        +N  S    
Sbjct: 470 LIAVLEEAGQAINPQLADMANSIR--NQYGKGRQRWSHGRGNKDNNSHGSPRNNISPTIS 527

Query: 416 --QKSHIPLKESEKISKLQQDIQEN 438
             Q  HIP + ++ +   QQ  QE 
Sbjct: 528 NWQSQHIPQQMNQHLHHSQQANQEK 552


>gi|300024067|ref|YP_003756678.1| DEAD/DEAH box helicase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525888|gb|ADJ24357.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 635

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 142/456 (31%), Positives = 237/456 (51%), Gaps = 13/456 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F   G +  +  A+   GYV PTPIQ++ +P  L+  D+ G+A+TG+GKTA+FVLP+L 
Sbjct: 5   NFEAFGFAEPLSRALTQCGYVTPTPIQVQALPPQLEGRDLLGMAETGSGKTATFVLPLLQ 64

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +    +     + L  +L PTRELA Q+        +N  +  A+++GG+    Q   L
Sbjct: 65  KIASQNSEPAPKQVLALVLAPTRELAIQIDQEVASLARNMRIRRAVVLGGVSKGPQINAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  VL+ TPGR+LD  N     ++ +E LV+DEADRM DMGFI  I+ I +++P  R+
Sbjct: 125 KRGVHVLVATPGRLLDLINMRTCDLSRVETLVLDEADRMFDMGFIRDIKKIVAMLPEARR 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM  E++K + + L+ P R+++++ S   + I+   +                +
Sbjct: 185 TALFSATMPVEIKKFAYDILKEPYRVDLSSKSVVVDRIDQKVMIVRTTEK---QSRLHTI 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +  K  I+F   K+    +   L   G S  A HGN  Q +R + L++F  G I+++
Sbjct: 242 LADEACKRVIVFTRTKRGADRVAERLGMAGISASAFHGNKAQNARQRALNDFMMGHIRVL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ ++ HV NFD+P   E Y+HR+GRT R G  G A +L    + + I A
Sbjct: 302 VATDIAARGIDVSNITHVVNFDMPLDPETYVHRVGRTARKGNSGIAISLCDPGERQEITA 361

Query: 360 IEKLIEKKVDWLNGDL--SSLNPPLEKIDIAQHNHARKNNPIPQK-----STGFDRRKKN 412
           IE+++++K++ +  D+   +L  P  +         R++             G +  ++ 
Sbjct: 362 IERMMKQKLEVI-ADVGGEALPMPERRQHHRAETGPRRDGDRQHHHAGGRRDGREGGQRG 420

Query: 413 YSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
               + H    E    S  +        + L    +
Sbjct: 421 ERPARPHRNGDERANASPARNGENRRPYEPLAIAAD 456


>gi|242080401|ref|XP_002444969.1| hypothetical protein SORBIDRAFT_07g002100 [Sorghum bicolor]
 gi|241941319|gb|EES14464.1| hypothetical protein SORBIDRAFT_07g002100 [Sorghum bicolor]
          Length = 946

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 134/455 (29%), Positives = 229/455 (50%), Gaps = 13/455 (2%)

Query: 11  KVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA-- 68
           K++  +   G+ KP PIQ + +P+++   D  G+A+TG+GKT +F+LPML  ++      
Sbjct: 375 KLLDTIKKLGFEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFLLPMLRHVKDQPPVA 434

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
               P  LI+ PTREL  Q+  + +K+ K   ++   + GG     Q  +L+RGA++++C
Sbjct: 435 PGDGPVGLIVAPTRELVVQIYLDIKKFSKVLGISCVAVYGGSGVAQQISELKRGAEIVVC 494

Query: 129 TPGRIL---DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           TPGR++      N     +  +  LV+DEADRM DMGF P I  I   +   RQT+LFSA
Sbjct: 495 TPGRMIDILCTSNGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRRDRQTVLFSA 554

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           T   +++ ++   L  P  I+V   S   + I           S++   L +LL      
Sbjct: 555 TFPRQVEMLARKVLIKPVEIQVGGRSVVNKDITQVV--EVRPESERFLRLLELLGKWCDK 612

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              ++F + +    +L  +L + G+   ++HG  DQ  R   +++FK     L++A+ +A
Sbjct: 613 GKILVFVHTQDKCDSLLKNLFQHGYQCLSLHGGKDQADRESTVADFKSNICSLLIATSVA 672

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARGLD+ ++  V N+DVPN  E+Y+HR+GRTGRAGR G A T +++E+ ++   + K +E
Sbjct: 673 ARGLDVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKGSAVTFISEEEERYAPDLVKALE 732

Query: 366 KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKES 425
                +  DL +L    ++          + +      +GF   ++   ++K     +  
Sbjct: 733 LSEQTVPDDLKALA---DRFMAKVKQGTERTHGTGYGGSGFKFNEEEDEARKFTKKAQAM 789

Query: 426 E---KISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
           E   +  K   D  E +    G   ++ A   P  
Sbjct: 790 EYGYEEEKSDSDFDEEEVHKAGDDLDVQAVGEPST 824


>gi|126176118|ref|YP_001052267.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS155]
 gi|217975023|ref|YP_002359774.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS223]
 gi|304412472|ref|ZP_07394078.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307307131|ref|ZP_07586869.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|189040039|sp|A3D9I5|RHLB_SHEB5 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797691|sp|B8E670|RHLB_SHEB2 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|125999323|gb|ABN63398.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
 gi|217500158|gb|ACK48351.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
 gi|304349114|gb|EFM13526.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306910370|gb|EFN40801.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 438

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 135/419 (32%), Positives = 217/419 (51%), Gaps = 6/419 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P+V  A+ + G+   TPIQ  ++P++LQ  D+ G AQTGTGKT +F++     
Sbjct: 11  FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH 70

Query: 63  ----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR +I+ PTRELA Q+A +     K+ +L V ++ GG  ++ Q K 
Sbjct: 71  LLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYGGESYDVQRKV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G D+LI T GRI+D+  +G + +N+I+ +V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPEAN 190

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L    + T  ++     +            +   +T ++     +    ++   L   
Sbjct: 191 QRLNMLFSATLSMKVQELAYDH-MNEPVKVEIAPEEKTSKNIKEEIFYPSQEEKMRLLLT 249

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +D  +  I+F N K +   L   LE  G  V  + G++ Q+ R++IL  F  G + +
Sbjct: 250 LIEEDWPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDI 309

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ 
Sbjct: 310 LVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFACEEYALNLP 369

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           AIE  I   +   N D  +L   +       H          +  +G  R     S  +
Sbjct: 370 AIESYINHSIPVSNYDSEALLADI-PTPAKIHRKHPSGTRNLRDRSGTSRPGAQRSGAR 427


>gi|325273395|ref|ZP_08139652.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
 gi|324101468|gb|EGB99057.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
          Length = 426

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 127/368 (34%), Positives = 197/368 (53%), Gaps = 1/368 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ AV +  +V+PTP+Q   IPL LQ  D+   AQTG+GKTA+FVLP+L  
Sbjct: 15  FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +      R+LIL PTRELA Q     + + +   +   L+ GG  F+ Q   L + 
Sbjct: 75  LVDLKGGRVEIRSLILLPTRELAQQTLKQVQLFSQFTYIKAGLVTGGEDFKEQAAMLRKV 134

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+L+  N G L ++++++L++DEADRMLDMGF   ++ +        QTLL
Sbjct: 135 PDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQTLL 194

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT T                  +   S +            A + +    + Q L + 
Sbjct: 195 FSAT-TGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIVQWLLAN 253

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T    I+F N +     +   L  +      +HG  DQ+ R   +  FK+G+ +++VA+
Sbjct: 254 ETFDKAIVFTNTRALADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVAT 313

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  +  V NFD+P   + Y+HR+GRTGRAG  G A +L+   D   + +IE+
Sbjct: 314 DVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSIER 373

Query: 363 LIEKKVDW 370
            ++++ + 
Sbjct: 374 YLKQQFER 381


>gi|323494307|ref|ZP_08099419.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323311470|gb|EGA64622.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 447

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 119/386 (30%), Positives = 188/386 (48%), Gaps = 6/386 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + K T IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 5   LHFKDLGLDNRLLKNLKHFDFKKATEIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 64

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR +IL PTRELA QV                L++GG  F  Q K L
Sbjct: 65  HKSLKTKAFSAKDPRAVILAPTRELAKQVYGELRSMLGGLTYDATLIVGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH     L ++ +E LV+DEADRMLD+GF P ++ I +     R+
Sbjct: 125 RRYPKFIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRR 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +     F        +   + + E  +         +      + + +
Sbjct: 185 QTLMFSATLDHAEVNDIAFEMLDAPKRIAIGAGSEEHKDITQKFYLCDHLDHKEAILERV 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   K  IIF   + +   L   L ++     A+ G + Q  R  I+S F+    +++
Sbjct: 245 LQEADYKQLIIFTATRADTERLTAKLNEKKLKAVALSGGLTQTQRNTIMSQFERAVFKIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDI +V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D      
Sbjct: 305 VTTDIASRGLDIANVTHVVNFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKR 364

Query: 360 IEKLIEK-----KVDWLNGDLSSLNP 380
           +E  +++     +++ L G    L P
Sbjct: 365 VEAFLQQDLSFSELEGLKGKFKGLRP 390


>gi|297620018|ref|YP_003708123.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           voltae A3]
 gi|297378995|gb|ADI37150.1| DEAD/DEAH box helicase domain protein [Methanococcus voltae A3]
          Length = 584

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 141/389 (36%), Positives = 212/389 (54%), Gaps = 11/389 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           M+F DL +S  ++  + + G+ + T IQ K IP+VL    DV G AQTGTGKT +F +P+
Sbjct: 1   MEFRDLNISESIMERLDEKGFTEATQIQEKAIPIVLDTELDVVGQAQTGTGKTLAFGIPI 60

Query: 60  LTILE-----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           +  ++      GR   +  + +IL PTRELA QV D  +   K   L +  + GG   E 
Sbjct: 61  IQKIQEKIEENGRKNKKAVKAIILTPTRELALQVHDEIDSVNKGNKLRLCTVYGGQSIEK 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G D++I TPGR++DH  R  L +N I+ LV+DEAD ML++GFI  ++ I S  
Sbjct: 121 QINKLRNGVDIVIGTPGRVIDHLGRRTLKLNEIDFLVLDEADEMLNLGFIDDVEEIMSKC 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
               + LLFSAT+   + ++ E  +   + I V + + T E  E      Y         
Sbjct: 181 KEDCRKLLFSATLPKSIMELVELHMGEYETIRVKSKALTTELTEQ---IYYEVKEHDKFE 237

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L + +  ++    G++FC  K +V  L   L  + +S  A+HG+++Q+ R   LS FK  
Sbjct: 238 LLRRIIDKEPGFYGLVFCKTKADVDQLMRRLNDENYSSEALHGDMNQKQRELALSRFKSH 297

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I +M+A+D+AARG+DI ++ HV N+D+P   E Y+HRIGRTGRAG  G A T V   + 
Sbjct: 298 KIDIMIATDVAARGIDINELTHVINYDIPQNPEAYVHRIGRTGRAGNKGTAITFVEPREF 357

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
           +    I K+   K D     +  +   +E
Sbjct: 358 RRFKYIMKI--SKSDAKKEKIPDVTEIVE 384


>gi|195120383|ref|XP_002004708.1| GI20069 [Drosophila mojavensis]
 gi|193909776|gb|EDW08643.1| GI20069 [Drosophila mojavensis]
          Length = 521

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 120/441 (27%), Positives = 196/441 (44%), Gaps = 12/441 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P +   +   G    TPIQ   IP +L   D  G A+TG+GKT +F LP+L  
Sbjct: 9   FLKLGLRPWLAKQLTKLGLKGVTPIQENCIPPILAGKDCIGAAKTGSGKTFAFALPILEK 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L+L PT ELA Q+++ F   G+   + V ++ GG     +++KL + 
Sbjct: 69  LSE---EPVSHFALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQR 125

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++  PGR+ DH         +    ++ +    +  G       I        +  L
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFSFDNLKFLVVDEADRMLNGDFDESLAIIERCLPKTRQNL 185

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI---EHCFVATYAQYSKKCALLQQLL 239
           F +    +  K S  F  +   +E +  S  A      +   +              +  
Sbjct: 186 FFSATMKDFMKESSIFPISKDLMEWSQESDVATVETLEQRYLLCADYDRDMVLIEALRKF 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + ++   N +IF N KK    L  +L         +HG + Q+ R+  LS FK   I+ +
Sbjct: 246 REENENANVMIFTNTKKYCQLLSMTLASMEIENVCLHGFMRQKERVAALSRFKSNHIRTL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           +A+D+AARGLDIP V  V N  +P   + YIHR+GRT RAGR G A ++     D++ + 
Sbjct: 306 IATDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGLAISIFRFPRDLELLG 365

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           AIE  I  K+     D       +E+I   Q N  R+ + +   +  FD R +NY  +  
Sbjct: 366 AIEAEINCKLTEHPID----QRMVERI-FMQVNVTRRESEMQLDNNDFDERAQNYRRKTW 420

Query: 419 HIPLKESEKISKLQQDIQEND 439
            +  K+ +++  L +  Q+  
Sbjct: 421 IMEGKDPDEMEALYRKKQKEK 441


>gi|150016621|ref|YP_001308875.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903086|gb|ABR33919.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 369

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 127/375 (33%), Positives = 210/375 (56%), Gaps = 6/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LGLS  ++  +  +G   PTPIQ ++IP +    DV   A TGTGKT +F+LP+L
Sbjct: 1   MNFKQLGLSDDLIKILNKSGIADPTPIQKQSIPKIRDGKDVIAEAATGTGKTLAFLLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +    ++    + LIL PTRELA Q+ +   K  +  ++ +  + GG    +Q KKL 
Sbjct: 61  ENI---NSKSNEIQALILTPTRELAIQITNEANKLKEFNDINILPVYGGKDIASQLKKLN 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH  R  + ++ ++  ++DEAD+ML MGF   +++I S +P  +Q 
Sbjct: 118 NNIHLIIATPGRLLDHLERKTIDLSKLKTFILDEADQMLLMGFKNEVESIISKMPRKKQL 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+   ++K++  ++++P  + +     + + IE   V T  +  +          
Sbjct: 178 LCFSATIDSSVKKLAYRYMKDPIEVFIKQDDISLDAIEQDIVETTDRKKRDALCKVLDED 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       IIFC  K+ V  L   L  + ++   +H +I Q  R +I+ +F+   IQ ++
Sbjct: 238 NPFM---AIIFCRTKRRVDELEAVLHTRKYNCEKLHSDIPQNKRERIMKSFRNAEIQYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + H++N+D+P   E+YIHRIGRTGRAG  G     +  ++IK ++ I
Sbjct: 295 ATDVAARGLDINGITHIYNYDIPESVESYIHRIGRTGRAGESGYTCMFIDPKNIKDVNEI 354

Query: 361 EKLIEKKVDWLNGDL 375
           E  I  K+   N ++
Sbjct: 355 EGAIGFKIRRRNVEI 369


>gi|114048723|ref|YP_739273.1| ATP-dependent RNA helicase SrmB [Shewanella sp. MR-7]
 gi|113890165|gb|ABI44216.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 420

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 134/382 (35%), Positives = 210/382 (54%), Gaps = 4/382 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P ++ ++   G++ PT IQ +T+P  L++ D+   A TGTGKTASF+LP L
Sbjct: 1   MQFEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPAL 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L     R      + IL PTRELA+Q+         +  L +A++ GG+P+  Q + L
Sbjct: 61  QHLIDFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   D+L+ TPGR++++ ++GK    +++IL+IDEADRMLDMGF   ++ I       +Q
Sbjct: 121 KGNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT+ +    +          IE++  +   E  +       A        L   L
Sbjct: 181 NMLFSATL-EGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKDHKFALLCHL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+ +K  I+F   +  V +L   L K G     + G+++Q+ R + LS F +G + ++
Sbjct: 240 LKQEEVKRAIVFVKTRDVVSSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI D+ HV NFD+P  A+ YIHRIGRTGRAG  G A +L    D++ +  
Sbjct: 300 LATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGK 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPP 381
           IE+ IE+ +      +  L P 
Sbjct: 360 IERYIEQPLKR--RIIEELRPK 379


>gi|240850851|ref|YP_002972251.1| ATP-dependent RNA helicase [Bartonella grahamii as4aup]
 gi|240267974|gb|ACS51562.1| ATP-dependent RNA helicase [Bartonella grahamii as4aup]
          Length = 460

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 153/432 (35%), Positives = 236/432 (54%), Gaps = 14/432 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   ++  +L AG  KP PIQ + IP++L+ HD+ G+AQTG+GKT +F LP+L+ 
Sbjct: 9   FTKLGLPTLLIKNLLIAGMSKPKPIQEQAIPVMLKGHDILGVAQTGSGKTLAFGLPILSQ 68

Query: 63  LEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     +         IL PTRELA Q+ +      K  +L+  L+ GG+    Q K++E
Sbjct: 69  ILALGDKRCPKTARALILAPTRELAVQIDETIRTAAKGAHLSTCLIFGGVSRLKQIKRME 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D      + ++    L++DEADRMLDMGFI  ++ I  L+   RQT
Sbjct: 129 AGVDVLIATPGRLKDLVREKCVDLSQSRFLILDEADRMLDMGFIHDVKQIAKLLHQERQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  +++  L +P +IEV    +TA  I            K          
Sbjct: 189 ALFSATMPREIAVLAKCLLNDPVKIEVVPQGTTAVEICQKLYCVPTNEKKNVLSKLL--- 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +     + I+F   K    ++  SL K G+SV  IHGN  Q +R   L  F+E ++Q++V
Sbjct: 246 TNPAFNSVIVFTRTKHGADSVTRSLAKIGYSVATIHGNKSQGARQSALKAFRERSVQILV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+DIP + HV N+D+P+ AE+Y+HRIGRTGR G  G+A TL  ++ + + + A
Sbjct: 306 ATDIAARGIDIPGISHVINYDLPDEAESYVHRIGRTGRNGASGEALTLFDEKIERERLRA 365

Query: 360 IEKLIEKK--VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE+LI  K  V+ +    ++         I   +  ++N+   ++     +R+K +  +K
Sbjct: 366 IERLIRMKLAVESVPEQFAAFPEK----PILPESREKENDK--ERRFKKSKRQKQFLGRK 419

Query: 418 SHIPLKESEKIS 429
                 + +  S
Sbjct: 420 DDAAQLQRKNSS 431


>gi|114706869|ref|ZP_01439769.1| Superfamily II DNA and RNA helicase [Fulvimarina pelagi HTCC2506]
 gi|114537817|gb|EAU40941.1| Superfamily II DNA and RNA helicase [Fulvimarina pelagi HTCC2506]
          Length = 457

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 143/412 (34%), Positives = 215/412 (52%), Gaps = 9/412 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL+  +  A+       PTPIQ + IP  L   D+ GIAQTGTGKTA+F LP+L 
Sbjct: 5   TFDGFGLAEPLTRALARLELTTPTPIQERAIPHALAGRDMLGIAQTGTGKTAAFALPLLH 64

Query: 62  ILEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L    G+   R  + LIL PTRELA Q+A++     +   ++  ++ GG+    Q + L
Sbjct: 65  HLMTVGGKPTTRTTKALILSPTRELAVQIAESIADLSEGTPISHCVVFGGVSVRPQIQAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD   +  + +     L++DEADRMLDMGF+  +  I    P  RQ
Sbjct: 125 ARGVDILVATPGRLLDLMEQRAIDLRETRHLILDEADRMLDMGFVRDVMKIVGKCPDDRQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +++FSATM   ++ +S+  L NP+++ V     T E I     +   +  K         
Sbjct: 185 SMMFSATMPKPIEDLSKKILTNPQKVSVTPAVVTVEKIAQSVFSVPQRAKK---HWLIDF 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S++     ++F   K     L   L+K G    AIHGN  Q +R K L  F++G I ++
Sbjct: 242 VSKNDTGRIVVFTRTKHGANRLTSDLDKAGIQALAIHGNKSQTARQKALGAFQDGEIDVL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARG+ + D+ HV NFD+P   E+Y+HRIGRT RAGR G+A  LV   +   +  
Sbjct: 302 VATDIVARGIHVDDISHVVNFDLPEEPESYVHRIGRTARAGRSGQAIALVDPSERAKLKQ 361

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           I KL    +     D + +N    ++D    +  ++  P  Q+      R +
Sbjct: 362 IIKLTGIDLTPQATDYT-VNVLAGELDA---DDGKRRGPRNQQPRNGRPRNR 409


>gi|255079166|ref|XP_002503163.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
 gi|226518429|gb|ACO64421.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
          Length = 450

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 145/419 (34%), Positives = 229/419 (54%), Gaps = 7/419 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G+  ++  A  D G+  P+ IQ ++IP  LQ  DV G+AQTG+GKT +F LP+L  
Sbjct: 17  FLGIGVCEELAEAAADLGWKAPSEIQAQSIPQALQGKDVIGLAQTGSGKTGAFALPILQE 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     + +    L+L PTRELA Q+A+ FE  G    +  A+L+GGI   AQ+ +L + 
Sbjct: 77  LLD---KPQAFFALVLSPTRELAIQIAEQFEALGAGIGVKTAVLVGGIDMMAQSIQLGKR 133

Query: 123 ADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             V++ TPGR++DH    K      +++L +DEADR+L++ F   I  I  +VP  R+T 
Sbjct: 134 PHVVVGTPGRVVDHLTNTKGFTLKQLQVLCLDEADRLLNLDFEQEIDQILKVVPRDRRTQ 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT ++ K+    L+NP ++EV+   ST +++           +K        L +
Sbjct: 194 LFSATMTSKVAKLQRACLRNPVKVEVSAKYSTVDSL---KQNYLFIPAKHKDCYVNYLFN 250

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + +    ++F         L       GF    IHG + Q  R+  L+ FK G   ++VA
Sbjct: 251 ELSSSTMMVFTRTCDQTRKLALVARNLGFGAIPIHGQMSQPKRIGALNKFKAGERNILVA 310

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDIP V  V N+DVP  +++Y+HR+GRT RAGR G A T+V + D++    IE
Sbjct: 311 TDVASRGLDIPAVDVVINYDVPQNSKDYVHRVGRTARAGRSGLAITMVTQYDVELYQKIE 370

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           +LI+KK+D  +    ++    E+++ AQ    ++      K  G  R +     + S +
Sbjct: 371 RLIQKKLDAYDAPEEAVLLMNERVNEAQRIAQQQMREADAKGGGKKRNRDGDGEEDSQL 429


>gi|255319837|ref|ZP_05361042.1| DEAD/DEAH box helicase [Acinetobacter radioresistens SK82]
 gi|262380369|ref|ZP_06073523.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255303156|gb|EET82368.1| DEAD/DEAH box helicase [Acinetobacter radioresistens SK82]
 gi|262297815|gb|EEY85730.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 618

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 131/382 (34%), Positives = 210/382 (54%), Gaps = 11/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            FA+  L   +  A+ D G+  PT +Q + IP  L+  D+   +QTG+GKTA+F+LP   
Sbjct: 4   TFAEFSLHESLTQALTDLGFTAPTAVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLN 63

Query: 59  ------MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                      ++    V  P  L++ PTRELA QV  +     ++        I G   
Sbjct: 64  ALADQDTFLPFKERMRAVTQPNILVISPTRELAQQVCQDAIALVRHMKGVRIAAIMGGMP 123

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             +  +  +GA V++ TPGR+LD  NR ++ ++ ++ L++DEADRMLD+GF   ++ I+ 
Sbjct: 124 FGKQIQQLKGAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEADRMLDLGFSEDLEAISE 183

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L    +QTL+FSAT  D + +++E  +++P RI + T  ST   I      T     K  
Sbjct: 184 LALNRKQTLMFSATFADRIIRLAECMMKDPMRIAIETGHSTNTDITQTLHWTDGFEHK-- 241

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L       +T+   ++F + +++   L   L + G SV A+HG + Q  R + L + +
Sbjct: 242 KKLLTHWLEDETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIR 301

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR GKA TL    
Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGKAITLATYR 361

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
           +   I A+E  +E +++    +
Sbjct: 362 ERGKIRALEDYLETRLNVSEIE 383


>gi|153002036|ref|YP_001367717.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS185]
 gi|217974608|ref|YP_002359359.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS223]
 gi|304410566|ref|ZP_07392184.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307304659|ref|ZP_07584409.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|151366654|gb|ABS09654.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|217499743|gb|ACK47936.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
 gi|304351050|gb|EFM15450.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306912061|gb|EFN42485.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 419

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 135/387 (34%), Positives = 210/387 (54%), Gaps = 7/387 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F D  L P ++ ++   G+  PT IQ +TIP  L++ D+   A TGTGKTASF+LP +
Sbjct: 1   MQFEDFQLDPSLLESLNAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPSL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +++  R      R LIL PTRELA+Q+            L +A++ GG+P+  Q + L
Sbjct: 61  QHLIDFPRRFAGQARILILTPTRELASQIHRYACHLATGQGLDIAIVTGGVPYGPQEEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+L+ TPGR++++ ++G      ++IL+IDEADRMLDMGF   +Q I       +Q
Sbjct: 121 AGNVDILVATPGRLMEYLDKGNFNAQEVDILIIDEADRMLDMGFSSVVQAIAIEAQGRKQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT+ +               IE++  +  +E  +       A   +    L   L
Sbjct: 181 NMLFSATL-EGGGVQRFAREVLNDPIEIDVEAPRSEKAKIHQWIHLADDKEHKFALLCHL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+ +K  I+F   +  V +L   L K G +   + G+++Q+ R + LS F +G + ++
Sbjct: 240 LRQEDVKRTIVFVKTRDIVSSLEGQLLKVGIACAFMRGDMEQKKRFQALSRFTKGEVNVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI D+ HV NFD+P  A+ YIHRIGRTGRAG  G A +L    D++ +  
Sbjct: 300 LATDVAARGIDIDDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGK 359

Query: 360 IEKLIEKK-----VDWLNGDLSSLNPP 381
           IE+ IE+      ++ L         P
Sbjct: 360 IERYIEQPLKRRVIEELRPKNKEARTP 386


>gi|242014232|ref|XP_002427795.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212512264|gb|EEB15057.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 460

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 110/375 (29%), Positives = 185/375 (49%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF +  L  +++  + + G+ KP+PIQ  +IP+ L   D+   A+ GTGKT ++ +P+L 
Sbjct: 72  DFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDILARAKNGTGKTGAYTIPVLE 131

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    +  + + LI+ PTRELA Q +    +  K+    V +  GG        ++ +
Sbjct: 132 LVDP---KKDVIQALIIVPTRELALQTSQICIELAKHMETKVMVTTGGTNLRDDIMRIYQ 188

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGRILD   +    M+  + LV+DEAD++L   F   + ++ S +P  RQ L
Sbjct: 189 KVQVVIATPGRILDLMEKNVANMDECKTLVLDEADKLLSQDFQGMLDHVISRLPKDRQIL 248

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    ++     F++               T++           ++       L S
Sbjct: 249 LYSATFPVTVKN----FMEKHLHEPYEVNLMEELTLKGVTQYYAFVQERQKVHCLNTLFS 304

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+    IH  + Q  R ++  +F+ G  + +V 
Sbjct: 305 KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRNGLCRNLVC 364

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  IE
Sbjct: 365 SDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRLALHRIE 424

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 425 QELGTEIKPIPKVID 439


>gi|289724644|gb|ADD18300.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
          Length = 652

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 140/410 (34%), Positives = 219/410 (53%), Gaps = 13/410 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F + G    V+  +   G+ KPT IQ +  P+ L   D+ G+AQTG+GKT ++VLP + 
Sbjct: 119 EFNEGGFPDYVMTGIKKLGFAKPTAIQAQGWPIALSGRDMVGVAQTGSGKTLAYVLPAVV 178

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  LIL PTRELA Q+     ++G    +    + GG P + Q++ L
Sbjct: 179 HINNQPRLEHSDGPIALILAPTRELAQQIQQVANEFGSQIQVRNTCIFGGAPKQPQSRDL 238

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 239 ERGVEIVIATPGRLIDFLERGVTNLRRCTYLVLDEADRMLDMGFEPQIRKIIKQIRPDRQ 298

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQL 238
            L++SAT   E++ ++E FL N  +I + + + +A       V    +  K         
Sbjct: 299 VLMWSATWPKEVRNLAEEFLDNYIQINIGSLTLSANHNILQIVDVCEEAEKTNKLNKLLG 358

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S +     IIF   KK V  +  S+ +QG+  CAIHG+  Q+ R  +L++F+ G   +
Sbjct: 359 EISSEKDTKTIIFVETKKRVDEITRSISRQGWRACAIHGDKSQQERDYVLTSFRNGRSSI 418

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    +    +
Sbjct: 419 LVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTTANANKAN 478

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
            + +++ +    +N  L         +D+A H+  R N      S G+ +
Sbjct: 479 DLIQVLREAKQVINPRL---------VDMASHSK-RGNGGRSNNSAGYQK 518


>gi|124002116|ref|ZP_01686970.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134]
 gi|123992582|gb|EAY31927.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134]
          Length = 571

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 136/372 (36%), Positives = 217/372 (58%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F ++GL  +++ AV + G+ KPTPIQ + IP +L +  D+   AQTGTGKTA+F LP+L
Sbjct: 3   TFEEIGLRSEILQAVQELGFEKPTPIQEQAIPYLLTEETDLLAFAQTGTGKTAAFSLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++    +++    LIL PTREL  Q+A + + + K   +    + GG   + Q   L+
Sbjct: 63  ESIDPDSKQIQA---LILCPTRELCLQIARDIQSFAKFMKIRTTAVYGGASIDKQIDALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR LD   R KL +  I+ LV+DEAD ML+MGF   +  I +  P  +QT
Sbjct: 120 RGVHIVVGTPGRSLDLIKRKKLKLEQIQWLVLDEADEMLNMGFKQELDAILATTPKEKQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  EL +++E ++  PK+I V   +S A+ + H F        +      + + 
Sbjct: 180 LLFSATMPQELIRIAEQYMHQPKKISVGQRNSGAKNVSHEFYVVQP---RDRYQALKRIA 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +    GI+FC  ++   ++ + L + G++  A+HG++ Q  R  ++  F+   +Q++V
Sbjct: 237 DINPHIYGIVFCRTRRETKDIANKLIQDGYNADALHGDLSQAQRDHVMGRFRSRHLQILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++ HV NF++P+  E YIHR GRTGRAG+ G +  ++   +   I  I
Sbjct: 297 ATDVAARGLDVDEITHVINFNLPDDLEVYIHRSGRTGRAGKTGVSLLIIGGREAGKIKTI 356

Query: 361 EKLIEKKVDWLN 372
           E+ I KK D   
Sbjct: 357 ERKIGKKFDRKQ 368


>gi|114561648|ref|YP_749161.1| ATP-dependent RNA helicase RhlB [Shewanella frigidimarina NCIMB
           400]
 gi|122300890|sp|Q088J2|RHLB_SHEFN RecName: Full=ATP-dependent RNA helicase rhlB
 gi|114332941|gb|ABI70323.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 434

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 136/420 (32%), Positives = 213/420 (50%), Gaps = 12/420 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  L P+++ A+ + G+   TPIQ  ++P++L   D+ G AQTGTGKT +F++    
Sbjct: 10  KFADFPLKPEILAALNENGFEFCTPIQALSLPILLNAKDIAGQAQTGTGKTMAFLVATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +   PR +I+ PTRELA Q+A + +    +  L V ++ GG  +E Q  
Sbjct: 70  HLLNVAAPESRKATEPRAIIMAPTRELAIQIAKDAKLLAAHTGLKVGIVYGGESYETQRA 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+LI T GRI+D+  +G + +++I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLDKGVDILIGTTGRIIDYVRQGVISLSHIQAVVLDEADRMFDLGFIKDIRFLFRRMPDA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +  L    + T  ++     +       +V        +        Y     K   L  
Sbjct: 190 KSRLNMLFSATLSMKVQELAYDHMNDPEKVEIEPLEKTSKNIKEEIFYPSMEDK-MRLLL 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +D     I+F N K +   L   LE  G  V  + G++ Q+ R++IL  F  G I 
Sbjct: 249 SLIEEDWPDKAIVFSNTKHSCEKLWSYLEGDGHRVGLLTGDVPQKKRIRILEQFTSGEID 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG+ G + +   +E   ++
Sbjct: 309 VLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISISFACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
             IE  I   +   N D  +L    PP  +I    H     +      S G  R   N S
Sbjct: 369 PEIETYINHSIPVSNYDKDALLDDIPPPARI----HRKPPTSRTRDGGSKGAHRSGGNTS 424


>gi|254431629|ref|ZP_05045332.1| DNA and RNA helicase [Cyanobium sp. PCC 7001]
 gi|197626082|gb|EDY38641.1| DNA and RNA helicase [Cyanobium sp. PCC 7001]
          Length = 437

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 157/368 (42%), Positives = 222/368 (60%), Gaps = 4/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   ++ AV + GY  P+PIQ++ IP VL  HDV   AQTGTGKTA F LPML  
Sbjct: 5   FAALGLGLPILKAVAEKGYTTPSPIQLECIPTVLAGHDVMAAAQTGTGKTAGFTLPMLER 64

Query: 63  LEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G   R  + R L+L PTRELAAQVA+N   YG+  +L   ++ GG+    Q  +L  
Sbjct: 65  LRHGPHARGGVVRALVLTPTRELAAQVAENVAAYGRYLDLRSDVVFGGVKINPQINRLRA 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GAD+L+ TPGR+LD   +  + ++ +E+LV+DEADRMLDMGFI  IQ + +L+P  RQ L
Sbjct: 125 GADILVATPGRLLDLQQQRAIRLDRVEVLVLDEADRMLDMGFIRDIQKLLALLPPKRQNL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT +  ++K++   L  P +++    +  A T+EH           +         +
Sbjct: 185 LFSATFSPSIRKLAHGLLHQPVQLQATPENQAAPTVEHLLHPCDMARKPELLTHL---IA 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  ++F   K     +   L   G    AIHGN  Q +R + L+ FK G ++++VA
Sbjct: 242 SNDWQQVLVFSRTKHGANRMADRLCAAGLEAAAIHGNKSQGARTRALAGFKTGEVRVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+DI  + HV N D+PN+AE+Y+HRIGRTGRAG  G A +LVA E+ + + AIE
Sbjct: 302 TDLAARGIDIHQLPHVVNLDLPNQAEDYVHRIGRTGRAGHPGHAISLVAAEEHELLGAIE 361

Query: 362 KLIEKKVD 369
           +LI   + 
Sbjct: 362 RLIGTSLP 369


>gi|145539279|ref|XP_001455334.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423133|emb|CAK87937.1| unnamed protein product [Paramecium tetraurelia]
          Length = 451

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 141/438 (32%), Positives = 230/438 (52%), Gaps = 12/438 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LG+  ++  A    GY  PTPIQ +++P  LQ+ D+ G+A+TG+GKT +F LP+L
Sbjct: 12  VTFKELGVCEELSSACEKLGYKIPTPIQQQSLPYTLQKKDIIGLAETGSGKTLAFGLPIL 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L       +    LIL PTREL  Q+ ++F+  G +  L   +++GG+   AQ K L 
Sbjct: 72  QHLLAN---PQPYYALILSPTRELCVQIQEHFQAIGASIALKSVVILGGMDPLAQAKALA 128

Query: 121 RGADVLICTP-GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TP   +    N     +  ++ LV+DEAD++L+M F   I  I  ++P  R 
Sbjct: 129 QKPHIIIGTPGKILYHLENTKGFNLKQLKFLVLDEADKLLNMDFEREINAILDIIPKERN 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT+++ K+    L++P +IEV++   T  T++           K        L
Sbjct: 189 TYLFSATMTNKVSKLQRASLKDPVKIEVSSKYQTVSTLQQ---NYLFVPDKYKETYLVYL 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      I+F    +  + +   L   GF   AIHG + Q  R+   + FK     L+
Sbjct: 246 LNELAGLTSIVFVATCQMAIKITLLLRNLGFQAIAIHGQMSQAKRLSSFNKFKSKESNLL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLDIP V  V NFD+P  A+ Y+HR+GRT RAG+ GKA +LV + D++    
Sbjct: 306 IATDVASRGLDIPFVDLVLNFDIPQNAKEYVHRVGRTARAGKSGKAISLVTQYDVEMYQK 365

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+LIEK++     + S +    E++  A     ++   + +K       KK    +   
Sbjct: 366 IEQLIEKELSQYPLEESDVMVFYERVQEANRIATQELKDLLEKKV-----KKTAVDEDDL 420

Query: 420 IPLKESEKISKLQQDIQE 437
              K  +   K+Q+D ++
Sbjct: 421 DDRKIKQINKKIQKDSKQ 438


>gi|255524857|ref|ZP_05391806.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|255511427|gb|EET87718.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
          Length = 375

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 131/370 (35%), Positives = 207/370 (55%), Gaps = 6/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LG+S  +V  + + G  +PTP+Q ++I L+    DV   +QTGTGKT +F+LP+ 
Sbjct: 1   MNFNQLGISEDIVKILKNNGITEPTPVQAESISLIKNGRDVIVESQTGTGKTLAFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +V   + LIL PTRELA Q+ +   K  +  ++ +    GG    +Q KKL+
Sbjct: 61  ENIST---KVDAVQALILTPTRELALQITEEALKLKQAKDINILAAYGGKDIGSQLKKLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  ++I TPGR+LDH  R  + ++ ++  V+DEAD+ML MGF   ++ I       RQT
Sbjct: 118 TGIHLIIATPGRLLDHLERKTIDLSKLKTFVLDEADQMLLMGFKNDVETIIKETSKKRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+  ++++++  + + P  + +N    T + I+   V T  +  +          
Sbjct: 178 LCFSATINSDVKRLAYRYTKEPLAVTINKEEVTLDAIKQQVVETTDRRKQDALCTVLNQD 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       IIFC  K+ V  L  SL K+G     +H +I Q  R +I+  F+ G  Q ++
Sbjct: 238 NPYM---AIIFCRTKRRVDELEVSLYKRGCDCKKLHSDILQSKRERIMKAFRNGDFQYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI  V H++N+D+P  AE+YIHRIGRTGRAG  G     +  +D   ++ I
Sbjct: 295 ATDVASRGLDISGVSHIYNYDIPESAESYIHRIGRTGRAGEEGYTCLFIDPKDRLRLEEI 354

Query: 361 EKLIEKKVDW 370
           EK I+ K+  
Sbjct: 355 EKAIKFKIPR 364


>gi|86143316|ref|ZP_01061718.1| hypothetical protein MED217_09040 [Leeuwenhoekiella blandensis
           MED217]
 gi|85830221|gb|EAQ48681.1| hypothetical protein MED217_09040 [Leeuwenhoekiella blandensis
           MED217]
          Length = 449

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 152/404 (37%), Positives = 222/404 (54%), Gaps = 5/404 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  ++ ++  A+ D G+  PTPIQ +   +V    DV GIAQTGTGKT +++LP+L 
Sbjct: 3   SFEDFKINKQLRYAIEDLGFTTPTPIQEQAFGVVKSGRDVVGIAQTGTGKTFAYMLPVLE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +   PR LIL PTREL  QV +  E YGK  ++ V  + GG     Q + + +
Sbjct: 63  NLKFS--KQINPRVLILVPTRELVLQVVEQIEAYGKYSSIRVVGVYGGTNINTQKEAVIQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+L+ TPGR+ D      L + +++ L+IDE D MLD+GF   + NI  L+P  RQ +
Sbjct: 121 GCDILVGTPGRLYDLAVSRALQLKSVKQLIIDEVDVMLDLGFRFQLVNIFDLLPQRRQNI 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATMTDE+ ++ + F   P+RI+V    +  + IE  +      Y+K   L   L   
Sbjct: 181 MFSATMTDEVDELMDTFFTTPERIQVALSGTPLDAIEQHYYEVPNFYTKANLLNILLKDK 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++  K  I   N+K          E  G  V  IH N  Q  R+  +  F  GT +++V 
Sbjct: 241 KEFKKTLIFVSNKKLADRLFKELEEVFGNEVGVIHANKTQNYRINAIEQFDAGTYRILVT 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+ +V HVFN DVP  AENY+HRIGRTGRAG  GK++ L   ++ +  +AIE
Sbjct: 301 TDVMARGLDLDEVTHVFNVDVPRFAENYMHRIGRTGRAGTTGKSYLLGTPDEQERKEAIE 360

Query: 362 KLIEKKVDWLNGDLSS-LNPPLEKIDIAQHNHARKNNPIPQKST 404
           KL++ ++     DL   L      I   + N+   NNP  +  T
Sbjct: 361 KLMDMQLP--QADLPEGLEVSKRLIPEEEPNYVEINNPTKRDET 402


>gi|195401282|ref|XP_002059243.1| GJ16136 [Drosophila virilis]
 gi|194156117|gb|EDW71301.1| GJ16136 [Drosophila virilis]
          Length = 523

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 133/391 (34%), Positives = 220/391 (56%), Gaps = 7/391 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLGL+  +  A  +  +  P+ IQ + IP+ LQ  DV G+A+TG+GKT +F LP+L
Sbjct: 64  LTWKDLGLNDTLCKACEELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPIL 123

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      L+L PTRELA Q+ + FE  G    +   +++GG+   AQ  +L 
Sbjct: 124 HALLENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 180

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGR++DH    K      I+ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 181 KKPHIIIATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 240

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L++P ++EV+    T + ++  ++       K   +    +
Sbjct: 241 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYIFIPV---KYKDVYLVHI 297

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK     ++
Sbjct: 298 LNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 357

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR G+A T+V + DI+    
Sbjct: 358 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITMVTQYDIELYQR 417

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           IE+L+ K++     +   +    E++  AQ 
Sbjct: 418 IEQLLGKQLPLYKCEEDEVMALQERVAEAQR 448


>gi|90416373|ref|ZP_01224305.1| ATP-dependent RNA helicase DeaD [marine gamma proteobacterium
           HTCC2207]
 gi|90332098|gb|EAS47312.1| ATP-dependent RNA helicase DeaD [marine gamma proteobacterium
           HTCC2207]
          Length = 619

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 160/490 (32%), Positives = 255/490 (52%), Gaps = 47/490 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DFA LG+S  V+ AV   GY +P+P+Q  +IP++L+  ++ G AQTGTGKTA+F LP L
Sbjct: 4   VDFASLGISAPVLKAVQQLGYEQPSPVQEASIPILLEGKNLLGTAQTGTGKTAAFALPFL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + L++   + + P+ L+L PTRELA QVA+ F+ Y K+      L I  G     Q + L
Sbjct: 64  SKLDE---KQKTPQVLVLTPTRELAIQVAEAFQSYAKHIKGFHVLPIYGGADIGGQLRGL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA V++ TPGR+LDH  R  L ++ I+ L++DEAD ML MGFI  ++ I +  P   Q
Sbjct: 121 KRGAQVVVGTPGRMLDHLRRRSLDLSQIKGLILDEADEMLRMGFIDDVETILAKTPPECQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   +++V++ +L + + + +   + T E I    +                +
Sbjct: 181 RTLFSATMPPAIKRVADKYLGDAEVVSIENKTKTVERIAQSHLMVKGHQKMDALTRILDV 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D M   IIF   K + + +   LE +GFS  A++G++ Q  R + ++  K+G + ++
Sbjct: 241 EQFDGM---IIFVRTKSSTLEIAEKLEARGFSSAALNGDLTQTVRERTINRLKKGQLDIV 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+DVP   E+Y+HRIGRTGRAGR GKA   V +++ + + +
Sbjct: 298 VATDVAARGLDVERISHVINYDVPYDNESYVHRIGRTGRAGREGKAIMFVTQKETRMLRS 357

Query: 360 IEKLIEKKVDWLN-------------------------GDLSSLNPPLEKIDIAQHN--- 391
           IEK   + +   N                           L   +  ++++  A+H+   
Sbjct: 358 IEKSTRQPISSFNLPSNEEVSGQRVEQFKEQLVGMCKSTKLDKFHSLVKEV-AAEHDIDM 416

Query: 392 ---------HARKNNPIPQKSTGFD-RRKKNYSSQKSHIPLKESEKISKLQQ-DIQENDA 440
                     A+K  P+  K    D  R  N        P + +E+  +  + + Q  D 
Sbjct: 417 TLLAAALAFEAQKERPLFPKMVAIDTPRASNKDRSNDRKPRERNERNDRSDRSERQRPDR 476

Query: 441 DSLGFRGNMP 450
                R   P
Sbjct: 477 APKAARDKAP 486


>gi|332994271|gb|AEF04326.1| ATP-dependent RNA helicase SrmB [Alteromonas sp. SN2]
          Length = 414

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 130/382 (34%), Positives = 197/382 (51%), Gaps = 5/382 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L  ++  AV D GY  PT +Q   IP  +   D+   A TGTGKTA+F+LP+ 
Sbjct: 1   MTFEDLELDEELCHAVADMGYESPTSVQSLVIPHAMDGRDILASAPTGTGKTAAFLLPVC 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L+  R +    R LIL PTRELA QV +   +  K+ ++   ++ GGI +    + L
Sbjct: 61  QFLLDYPRKQPGSTRILILTPTRELALQVYEQAVELTKHTDIVSGVITGGINYGTDRETL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+L+ TPGR+ +H         +IE L++DEADRMLDMGF   +  I S   + +Q
Sbjct: 121 SQSIDILVATPGRLFEHIQNEMADCRDIECLILDEADRMLDMGFRTIVNQIASEARWRKQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSA  T E   VS+      +  EV     + +         +            + 
Sbjct: 181 NMLFSA--TLEGGGVSQFAKDILQNPEVIEAFPSRKEKNKIHQWYHLADDLNHKKALLVH 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++     ++F   ++ +  L   L  Q   VC + G + Q  RM  L+ FK G + ++
Sbjct: 239 ILKEQATTTVVFVKTRERLQMLKDYLASQDIMVCWLQGEMPQDKRMAALTRFKSGEVPVL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+P+V HV NFD+P +A+ Y+HRIGRTGRAG  G A +L+   D + I  
Sbjct: 299 LATDVAARGIDVPEVSHVINFDMPRKADVYVHRIGRTGRAGAKGTAISLIEAHDFEFITK 358

Query: 360 IEKLIEKKVDWLNGDLSSLNPP 381
             +  E+ +      +S L P 
Sbjct: 359 AARYTEEPIKA--RVISELRPQ 378


>gi|320583039|gb|EFW97255.1| Cytoplasmic DExD/H-box helicase [Pichia angusta DL-1]
          Length = 451

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 112/379 (29%), Positives = 177/379 (46%), Gaps = 6/379 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L  +++  + +AG+ KP+PIQ + IP+ L   D+   A+ GTGKTA+FV+P L 
Sbjct: 30  TFESFHLKRELLMGIFEAGFEKPSPIQEEAIPVALMGRDILARAKNGTGKTAAFVIPTLE 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +V   + LIL PTRELA Q +   +  G +  + V +  GG        +L  
Sbjct: 90  KLKP---KVNKIQALILVPTRELALQTSQVVKTLGAHLGIQVMVTTGGTSLRDDIMRLHE 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT---R 178
              VL+ TPGR+LD  +R     +   + V+DEAD+ML   F   I+ I    P +   +
Sbjct: 147 PVHVLVGTPGRVLDLASRKLAEFDECRMFVMDEADKMLSREFKNIIEQILKFFPQSSSGK 206

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
                S   +       ++F+                T++           K+       
Sbjct: 207 GNGYQSLLFSATFPLAVKSFMDQHLYKPYEINLMDELTLKGITQYYAFVEEKQKLHCLNT 266

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S+  +   IIFCN    V  L   + +  +S    H  + Q +R K+   F++G ++ 
Sbjct: 267 LFSKLQINQSIIFCNSTNRVELLSKKITELDYSCYYSHAKMPQAARNKVFHEFRQGKVRN 326

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+   D  ++ 
Sbjct: 327 LVCSDLLTRGIDIQAVNVVVNFDFPKTAETYLHRIGRSGRFGHFGIAINLINWNDRFNLY 386

Query: 359 AIEKLIEKKVDWLNGDLSS 377
            IE+ +  ++  +  ++  
Sbjct: 387 KIEQELGTEIKPIPAEIDK 405


>gi|148359886|ref|YP_001251093.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
 gi|296107936|ref|YP_003619637.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99
           Alcoy]
 gi|148281659|gb|ABQ55747.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
 gi|295649838|gb|ADG25685.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99
           Alcoy]
          Length = 589

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 164/500 (32%), Positives = 263/500 (52%), Gaps = 44/500 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+    S  +  A+ D  ++ P+PIQ +TIPL+LQ  D   +AQTGTGKTA+F LP+L 
Sbjct: 7   NFSTFNFSSALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            L      +   + LIL PTRELA QVA+ FE   K   N+T+A+L GG  +  Q K+L 
Sbjct: 67  NL---SPEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGRILDH ++G LL+NN++  ++DEAD ML MGFI  ++ I   +P  +Q 
Sbjct: 124 SGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQM 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   +++++  +L +P  IE+   ++T ++IE  F+           +    ++
Sbjct: 184 ALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVLEVE 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   I+F   K +   +   L++ G    AIHG+I Q  R +I++ FK+G I ++V
Sbjct: 244 DYQGV---IVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV N+D+P+  E Y+HRIGRTGRAGR G     V  ++ + I +I
Sbjct: 301 ATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSI 360

Query: 361 EKLIEKKVDWLNGD-------------LSSLNPPL---------------------EKID 386
           E+   ++++ +                +S++   L                       +D
Sbjct: 361 ERHTRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVEEYIKEHDVSAVD 420

Query: 387 IAQHNHARKNNPIP-QKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGF 445
           +A       +  +P +K     +    +  +++    K  +   + ++D + + AD  G 
Sbjct: 421 VAAALALLLHKDMPWRKELNMPKAVSAFKEERARAGEKGLDLRGRFKEDRKSSFADRKGA 480

Query: 446 RGNMPAFML--PKNRGKLND 463
           RG+   F       R K ND
Sbjct: 481 RGSKKDFAKDFSNERKKFND 500


>gi|146329072|ref|YP_001209762.1| ATP-dependent rna helicase Rhl [Dichelobacter nodosus VCS1703A]
 gi|146232542|gb|ABQ13520.1| ATP-dependent rna helicase Rhl [Dichelobacter nodosus VCS1703A]
          Length = 432

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 128/423 (30%), Positives = 206/423 (48%), Gaps = 11/423 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   ++ A+ D  + K TPIQ +T+PL L  +DV GIAQTGTGKTA+F+L ++  
Sbjct: 11  FTDFPIHSALLEALEDIHFTKTTPIQAQTLPLTLAGYDVMGIAQTGTGKTAAFLLSLMHY 70

Query: 63  LEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L       + + P  ++L PTRELA Q+    +  G    L    + GG   E Q K  +
Sbjct: 71  LMTNPVHPKAKGPWAIVLAPTRELAIQIKKEMDLLGAYTGLVSLAIYGGTSIEHQKKLFQ 130

Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               DV+I TPGRI+D F +    + NIE+ V+DEADRM D+GFI  ++ +   +P   +
Sbjct: 131 ACNVDVIIGTPGRIIDLFKQKVFRLKNIEVCVLDEADRMFDLGFIDDVRYLLRQMPPAYE 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L    + T   +     +        V   S             +    +K  LL  L 
Sbjct: 191 RLNLLFSATMPQKVQELAYEHFNAPKVVAIESQQTTANNITHYLYHTAKHEKTPLLLGLF 250

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ I    +                +   + G++ Q+ R +I+ +F+EGT+ ++
Sbjct: 251 ARERPERSMIFLNTKHDLERLSLVLTANGYHNAA-LSGDVAQKKREQIIRDFQEGTVNIV 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+ I  + HVFN+D+P  AE+Y+HRIGRT RAG  G A +   +E +  +  
Sbjct: 310 VATDVAARGIHIDGITHVFNYDLPQIAEDYVHRIGRTARAGASGTAISFACEEYVYSLPE 369

Query: 360 IEKLIEKKVDWLNGDLS---SLNPP----LEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           IE  + +K+     + S    + PP    L+ +   + +  R +N   +K      R++ 
Sbjct: 370 IEHFLGEKIPVKPIEESLIVDVIPPSDEALDALRNEKESRIRIHNRGNRKPMTKSIRRRR 429

Query: 413 YSS 415
           Y  
Sbjct: 430 YQK 432


>gi|148239847|ref|YP_001225234.1| superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803]
 gi|147848386|emb|CAK23937.1| Superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803]
          Length = 606

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 138/371 (37%), Positives = 213/371 (57%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G S  ++  +   GY +P+PIQ    P ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 59  FAGFGFSEALLKTLDAKGYKEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 118

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKLER 121
           L+    R   PR L+L PTRELA QVAD+F+ Y   +     L I G   F +Q   L+R
Sbjct: 119 LDG---RSNTPRVLVLAPTRELAMQVADSFKAYAAGHPHLNVLAIYGGSDFRSQIHALKR 175

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR++DH  +G L    +  LV+DEAD ML MGFI  ++ I   +P  RQ +
Sbjct: 176 GVDVVVGTPGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQVV 235

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +E++++S+ +L+ P  I + T    A+ I    +     +          +  
Sbjct: 236 LFSATMPNEIRRLSKRYLREPAEITIKTKDREAKRIRQRSITLQNAHK---IEALNRVLE 292

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T +  IIF   K   + +  SLE  G  V  ++G++ Q  R + +   ++GT+ ++VA
Sbjct: 293 AVTGEGVIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVDRLRKGTVNILVA 352

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N+D+P  +E Y+HRIGRTGRAGR G+A   V   + + +  +E
Sbjct: 353 TDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAILFVTPRERRFVGNLE 412

Query: 362 KLIEKKVDWLN 372
           + + + ++ ++
Sbjct: 413 RAVNQSIEPMD 423


>gi|238008396|gb|ACR35233.1| unknown [Zea mays]
          Length = 618

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 135/406 (33%), Positives = 207/406 (50%), Gaps = 16/406 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF DL L   ++  + + G V+PTPIQ++ +P+VL   D+ GIA TG+GKT  FVLP++ 
Sbjct: 174 DFRDLRLPEPMLRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIM 233

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
                           P  +I+ P+RELA Q  D  E++           +   L IGG+
Sbjct: 234 VALQEESLMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLIPLKEAGYPEIRHLLCIGGV 293

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q   L++G  +++ TPGR+ D   + K+ ++N   L +DEADR++D+GF   I+ +
Sbjct: 294 DMRTQLDVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIKEV 353

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q     F +N     V      A       +       +
Sbjct: 354 FDHFKDQRQTLLFSATMPQKIQN----FAKNALVKPVTVNVGRAGAANLDVIQEVEYVKE 409

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
              ++  L   Q T    +IFC  K +V  +   L  +G    AIHG  DQ  R   + +
Sbjct: 410 DARIIYLLECLQKTPPPVLIFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERQNAIDS 469

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 470 FKTGRKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 529

Query: 351 KEDIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           K   +  +  ++ L+++    +   L+ LN PL+  +I       K
Sbjct: 530 KNQTETTLLDLKHLLKEAKQRIPPVLAELNDPLDDEEIIAKESGVK 575


>gi|226502378|ref|NP_001147853.1| ATP-dependent RNA helicase DDX41 [Zea mays]
 gi|195614138|gb|ACG28899.1| ATP-dependent RNA helicase DDX41 [Zea mays]
          Length = 616

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 135/406 (33%), Positives = 207/406 (50%), Gaps = 16/406 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF DL L   ++  + + G V+PTPIQ++ +P+VL   D+ GIA TG+GKT  FVLP++ 
Sbjct: 172 DFRDLRLPEPMLRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIM 231

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
                           P  +I+ P+RELA Q  D  E++           +   L IGG+
Sbjct: 232 VALQEESLMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLIPLKEAGYPEIRHLLCIGGV 291

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q   L++G  +++ TPGR+ D   + K+ ++N   L +DEADR++D+GF   I+ +
Sbjct: 292 DMRTQLDVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIKEV 351

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q     F +N     V      A       +       +
Sbjct: 352 FDHFKDQRQTLLFSATMPQKIQN----FAKNALVKPVTVNVGRAGAANLDVIQEVEYVKE 407

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
              ++  L   Q T    +IFC  K +V  +   L  +G    AIHG  DQ  R   + +
Sbjct: 408 DARIIYLLECLQKTPPPVLIFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERQNAIDS 467

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 468 FKTGRKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 527

Query: 351 KEDIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           K   +  +  ++ L+++    +   L+ LN PL+  +I       K
Sbjct: 528 KNQTETTLLDLKHLLKEAKQRIPPVLAELNDPLDDEEIIAKESGVK 573


>gi|45190904|ref|NP_985158.1| AER301Cp [Ashbya gossypii ATCC 10895]
 gi|74693373|sp|Q756G5|DBP8_ASHGO RecName: Full=ATP-dependent RNA helicase DBP8
 gi|44983946|gb|AAS52982.1| AER301Cp [Ashbya gossypii ATCC 10895]
          Length = 435

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 131/433 (30%), Positives = 203/433 (46%), Gaps = 21/433 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++  +  A+      +PT IQ   IP +L   D  G A+TG+GKT +F  PMLT
Sbjct: 7   TFKDLGVAKWLAEALNSMKITQPTTIQKACIPEILAGRDCIGGAKTGSGKTIAFAAPMLT 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                   +      +L PTRELA Q+A+ F   G   N+ VAL++GG    +Q  +L+R
Sbjct: 67  KWSADPCGMFGI---VLTPTRELAMQIAEQFTALGSVMNIRVALVVGGEDIVSQALELQR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMN----NIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
               +I TPGR+  H              +  LV+DEAD +L   F   +     ++P  
Sbjct: 124 KPHFIIATPGRLAHHIMHSGEDTIGGLKRVRYLVLDEADILLTDTFSDALATCVQILPPK 183

Query: 178 RQTLL--FSATMTDEL-----QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +     F+ATMTD++        +            N                  ++ K
Sbjct: 184 EKRQNLLFTATMTDQVLALKDAPPTSGKPPLFSFHVENLDDLAVPASLQTTYLLVPEHVK 243

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L Q L   +   K+ I+F N+  +   L   L +    V ++H  + QR R   L  
Sbjct: 244 EAYLYQVLSSEEYKSKSAIVFVNRTISAEILRRMLMQLEIRVTSLHSQMPQRERTNSLQR 303

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+    ++++A+D+A+RGLDIP V  V N+D+P   + YIHR GRT RAGR G+A + +A
Sbjct: 304 FRANAARVLIATDVASRGLDIPAVQLVVNYDIPANPDTYIHRAGRTARAGRGGEALSFIA 363

Query: 351 KEDIKHIDAIEKLIEKKVDWLN--GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
            +D+  I AIE+ I KK+D     GD + +   L K+ +A     ++ + +     GF  
Sbjct: 364 PKDVSRIQAIEERIGKKMDEFTKVGDTALIRKSLNKVTVA-----KRESLMAMDKEGFGE 418

Query: 409 RKKNYSSQKSHIP 421
           R+K   S+     
Sbjct: 419 RRKTQRSKGKQTK 431


>gi|303317380|ref|XP_003068692.1| ATP-dependent rRNA helicase RRP3, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240108373|gb|EER26547.1| ATP-dependent rRNA helicase RRP3, putative [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 474

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 136/430 (31%), Positives = 228/430 (53%), Gaps = 10/430 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +  A    GY  PT IQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 49  SFKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQ 108

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    L+L PTRELA Q++  FE  G   ++  A+++GG+   +Q   L +
Sbjct: 109 ALMD---KPQSMFGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGK 165

Query: 122 GADVLICTPGRI-LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+     N     + +++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 166 KPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPKERRT 225

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L NP R+  +  S+  +T+            K   +    L 
Sbjct: 226 YLFSATMSSKVESLQRASLSNPLRV--SVSSNKYQTVSTLLQNCLIIPHKHKDIYLIYLL 283

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ IIF         L   L   GF    +HG + Q +R+  L  F+  +  ++V
Sbjct: 284 NEFPGQSVIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILV 343

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V N+D+P+ ++ YIHR+GRT RAG+ G+AF+LV + D++    I
Sbjct: 344 ATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQRI 403

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI----PQKSTGFDRRKKNYSSQ 416
           E  + K++D    +   +    +++  AQ +   +   +     +K      R+    ++
Sbjct: 404 EAALGKELDEYKVEKEEVMVLSDRVGEAQRHAITEMKELHENRGKKGATLRNRRIGKGAK 463

Query: 417 KSHIPLKESE 426
           +S   +   E
Sbjct: 464 RSRDEMDREE 473


>gi|229161413|ref|ZP_04289395.1| ATP-dependent RNA helicase [Bacillus cereus R309803]
 gi|228622053|gb|EEK78897.1| ATP-dependent RNA helicase [Bacillus cereus R309803]
          Length = 454

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 142/409 (34%), Positives = 231/409 (56%), Gaps = 14/409 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LG+S      + + G  + TPIQ + IP+++   D+ G A+TGTGKT +FVLP+L 
Sbjct: 6   NFLELGISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + V+    LI+ PTRELA Q+    +K          L I G      Q +KL+
Sbjct: 66  KIDPESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  + ++N+  +V+DEAD+ML  GF+  I++I    P ++QT
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ ++  P+ ++V +   T  TIE           +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMVQVQSEEVTVNTIEQ---RVIETTDRAKPDALRFVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K     L   L+ +G++   +HG+I Q  R +++ +F+E  IQ ++
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDDLKGRGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D KH++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           EK +   +     +     P ++++D    N      P P+KS  + +R
Sbjct: 360 EKTLGAPLQREIIE----QPKIKRVD---ENGKPLPKPAPKKSDQYRQR 401


>gi|156976352|ref|YP_001447258.1| ATP-dependent RNA helicase [Vibrio harveyi ATCC BAA-1116]
 gi|156527946|gb|ABU73031.1| hypothetical protein VIBHAR_05125 [Vibrio harveyi ATCC BAA-1116]
          Length = 447

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 124/405 (30%), Positives = 194/405 (47%), Gaps = 9/405 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + K T IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 5   LQFKDLGLDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 64

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR +IL PTRELA QV               AL++GG  F  Q K L
Sbjct: 65  HKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLGGLTYDAALILGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH     L ++ +E LV+DEADRMLD+GF P ++ I       R+
Sbjct: 125 RRYPKFIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHKAAKHRRR 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +              +    S  E  +         +      + + +
Sbjct: 185 QTLMFSATLDHAEVNDIASEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILERV 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  IIF   + +   L + L ++     A+ GN++Q  R  I+S F+    +++
Sbjct: 245 LEEAEYRQVIIFTATRDDTERLTNKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDI  V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D      
Sbjct: 305 VTTDVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKR 364

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKIDIA-QHNHARKNNP 398
           +E  +++ +++     L G    L P   K D   +    +K  P
Sbjct: 365 VETYLQQDLNFSVFEDLKGKFKGLKP--RKPDFRNKKTETKKARP 407


>gi|119186961|ref|XP_001244087.1| hypothetical protein CIMG_03528 [Coccidioides immitis RS]
 gi|118595828|sp|Q1E1N5|RRP3_COCIM RecName: Full=ATP-dependent rRNA helicase RRP3
          Length = 474

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 136/430 (31%), Positives = 228/430 (53%), Gaps = 10/430 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +  A    GY  PT IQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 49  SFKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQ 108

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    L+L PTRELA Q++  FE  G   ++  A+++GG+   +Q   L +
Sbjct: 109 ALMD---KPQSMFGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGK 165

Query: 122 GADVLICTPGRI-LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+     N     + +++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 166 KPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPKERRT 225

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L NP R+  +  S+  +T+            K   +    L 
Sbjct: 226 YLFSATMSSKVESLQRASLSNPLRV--SVSSNKYQTVSTLLQNCLIIPHKHKDIYLIYLL 283

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ IIF         L   L   GF    +HG + Q +R+  L  F+  +  ++V
Sbjct: 284 NEFPGQSVIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILV 343

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V N+D+P+ ++ YIHR+GRT RAG+ G+AF+LV + D++    I
Sbjct: 344 ATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQRI 403

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI----PQKSTGFDRRKKNYSSQ 416
           E  + K++D    +   +    +++  AQ +   +   +     +K      R+    ++
Sbjct: 404 EAALGKELDEYKVEKEEVMVLSDRVGEAQRHAITEMKELHENRGKKGATLRNRRIGKGAK 463

Query: 417 KSHIPLKESE 426
           +S   +   E
Sbjct: 464 RSRDEMDREE 473


>gi|123477017|ref|XP_001321678.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121904509|gb|EAY09455.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 521

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 124/410 (30%), Positives = 200/410 (48%), Gaps = 5/410 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F +L L  +++  + +  +  PTPIQ  +IP+ L+ +D+ GIA+TG+GKTASF++P  
Sbjct: 85  VTFEELNLPQEIMEVIKENNWTNPTPIQSLSIPIGLKGNDMVGIAKTGSGKTASFLIPAL 144

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           M    ++  +    P  L+L PTRELA Q  +   ++          + GG     Q  K
Sbjct: 145 MHISAQRKISENDGPIVLVLSPTRELALQTDEVAAQFCVKMGYKHVCIYGGEDRHRQINK 204

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L    +++  TPGR++D    G    N    LV+DEADRMLDMGF P I+ I + +   R
Sbjct: 205 LRFHPEIVTATPGRLIDFLQSGVFNPNRANFLVLDEADRMLDMGFEPQIRAIIASLTKDR 264

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +T +FSAT   E+++++ +FL NP  + V              V    ++ K    ++  
Sbjct: 265 ETFMFSATWPKEIRQLASDFLSNPIHMHVGGEELATNERIQQNVLLLQEHEKGEKCVE-- 322

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  ++  K  IIF   K+ V  L   L+ +     +IHG+  Q+ R+  L  FK      
Sbjct: 323 ILKENQSKKIIIFAKTKRTVQQLSDFLKSKSIRCLSIHGDKTQQERVVALDKFKNARTGG 382

Query: 299 MVASDLA-ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ +    ARGLD+ D+  V N+D P   E+Y+HRIGRT R  + G A T    E+    
Sbjct: 383 VLVATDVAARGLDVTDIDLVLNYDFPGDIEDYVHRIGRTARGEKTGVAITFFTDENRFLA 442

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
             + ++I+         LS++   + K D       +  NP      G +
Sbjct: 443 SDLVEVIKNSAQVPPDWLSAMAVHVTKSDGQSITAKKVYNPRDGNGFGSE 492


>gi|195397525|ref|XP_002057379.1| GJ17053 [Drosophila virilis]
 gi|194147146|gb|EDW62865.1| GJ17053 [Drosophila virilis]
          Length = 1244

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 137/447 (30%), Positives = 228/447 (51%), Gaps = 12/447 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 538 TWAQCGVSKKEMDVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 597

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +           +I+ PTREL  Q+  +  K+ ++  L    + GG     Q  +L
Sbjct: 598 HILDQPSLEDGDGAIAIIMAPTRELCMQIGKDIRKFSRSLGLRPVCVYGGTGISEQIAEL 657

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 658 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRP 717

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   L+ P  + V   S   +               K   L 
Sbjct: 718 DRQTVMFSATFPRQMEALARRILKKPVEVIVGGRSVVCKD--VEQNVVILSDEAKFFKLL 775

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +FK G +
Sbjct: 776 ELLGVYQETGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKV 835

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG  G A+T +  E  ++
Sbjct: 836 RLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGNKGSAYTFITPEQSRY 895

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-----KK 411
              + + ++     +  DL +L    +    A+            K   FD +     K+
Sbjct: 896 AGDVIRALDLSGTPVPPDLQTLWNDYKAAQEAEGKTVHTGGGFSGKGFKFDEQEFNAVKE 955

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQEN 438
           +   QK+ + L +S+    ++QDI + 
Sbjct: 956 SKKLQKAALGLADSDDEEDIEQDIDQQ 982


>gi|195069886|ref|XP_001997052.1| GH22580 [Drosophila grimshawi]
 gi|193891570|gb|EDV90436.1| GH22580 [Drosophila grimshawi]
          Length = 793

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 133/381 (34%), Positives = 212/381 (55%), Gaps = 3/381 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F + G    V+  +   G+ KPT IQ + +P+ L   D+  +AQTG+GKT ++VLP +
Sbjct: 146 IEFEEGGFPDYVMNEIRKQGFTKPTAIQAQGMPIALSGRDLVAVAQTGSGKTLAYVLPAV 205

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA Q+     ++G N  +    + GG P   Q + 
Sbjct: 206 VHINNQPRLERGDGPIALVLAPTRELAQQIQAVASEFGSNTQVRNTCIFGGAPKGQQARD 265

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 266 LERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDR 325

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQ 237
           Q L++SAT   E+++++E FL N  ++ + + S +A       V    +  K    +   
Sbjct: 326 QVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDESEKIAKLVQLL 385

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              S +     IIF   KK V  +  ++ +QG+  CAIHG+  Q+ R  +LS+F+ G   
Sbjct: 386 TQISGENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHS 445

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    +    
Sbjct: 446 ILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKA 505

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
           + + +++ +    +N  L ++
Sbjct: 506 NDLIQVLREANQTINPKLLNM 526


>gi|198470027|ref|XP_001355197.2| GA19457 [Drosophila pseudoobscura pseudoobscura]
 gi|198147147|gb|EAL32254.2| GA19457 [Drosophila pseudoobscura pseudoobscura]
          Length = 1243

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 135/434 (31%), Positives = 225/434 (51%), Gaps = 15/434 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 538 TWAQCGVSKKEMDVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 597

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +           +I+ PTREL  Q+  +  ++ K+  L    + GG     Q  +L
Sbjct: 598 HILDQPNLDEGDGAIAIIMAPTRELCMQIGKDIRRFSKSLGLRPVCVYGGTGISEQIAEL 657

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RG+++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 658 KRGSEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRP 717

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   L+ P  + V   S   + +E   V    +       L 
Sbjct: 718 DRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKDVEQHVVILNDESK--FFKLL 775

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +FK G +
Sbjct: 776 ELLGIYQEAGSIIVFADKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKV 835

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  E  ++
Sbjct: 836 RLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRY 895

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I + ++     +  +L +L    +    A+            K   FD ++ N    
Sbjct: 896 AGDIIRALDLSGCLVPAELQTLWTEYKSAQEAEGKKVHTGGGFSGKGFKFDEQEFN---- 951

Query: 417 KSHIPLKESEKISK 430
                +KES+K+ K
Sbjct: 952 ----AVKESKKLQK 961


>gi|169598332|ref|XP_001792589.1| hypothetical protein SNOG_01967 [Phaeosphaeria nodorum SN15]
 gi|118595361|sp|Q0V1Z7|DRS1_PHANO RecName: Full=ATP-dependent RNA helicase DRS1
 gi|111069059|gb|EAT90179.1| hypothetical protein SNOG_01967 [Phaeosphaeria nodorum SN15]
          Length = 808

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 144/453 (31%), Positives = 223/453 (49%), Gaps = 33/453 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  +   +   G+ +PTPIQ K IP+ +Q  DV G A+TG+GKTA+F++P+L 
Sbjct: 286 SFHAMSLSRPIQKGLAAIGFTEPTPIQAKAIPIAMQGKDVVGGAETGSGKTAAFLIPILE 345

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  I  PTRELA Q  +   K     ++T ALL GG     Q   L+ 
Sbjct: 346 RLLYRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALLAGGFSSREQEVMLKT 405

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH +      + ++EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 406 RPDVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFETQLNEILTTIPKSRQT 465

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT  + K+    +  P R+ V+    T + +   F+        K       + 
Sbjct: 466 MLFSATMTSTVDKLIRIGMDKPVRLMVDAKKHTVKGLTQEFIRLRQGKEDKRLAYLMYIC 525

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  IIF  QKK    +       G     +HGN+ Q  R++ +  F+ G    ++
Sbjct: 526 EKIYTERVIIFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQAVEAFRSGKSSYLL 585

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA- 359
           A+D+A+RGLDI +V  V N++ P   E Y+HR+GRT RAGR G+A TL A+ D K +   
Sbjct: 586 ATDVASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQA 645

Query: 360 ------------------------IEKL--IEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
                                   +EKL  +E +++    D+         + I + +  
Sbjct: 646 VKQSRDQGSKVVSRQVPVEETDRWMEKLRGLEDEIE----DVLKEEKEERTLSITERDLK 701

Query: 394 RKNNPIPQKSTGFDRRKKN-YSSQKSHIPLKES 425
           R  N I  ++    R K+  + ++K  +  +E 
Sbjct: 702 RGMNLIEHEAEIKSRPKRVWFETEKEKMAEREK 734


>gi|312083101|ref|XP_003143720.1| ATP-dependent RNA helicase in chromosome III [Loa loa]
 gi|307761116|gb|EFO20350.1| ATP-dependent RNA helicase in chromosome III [Loa loa]
          Length = 463

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 127/439 (28%), Positives = 231/439 (52%), Gaps = 11/439 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LG++  +  A     + KPT +QI  +P   ++ D+ G+A+TG+GKTA+F +P+L
Sbjct: 24  ITFQQLGVTDVLCEACDRLNWKKPTKVQIAALPHAFKKRDIIGLAETGSGKTAAFAIPIL 83

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKL 119
             L +   ++     L+L PTRELA Q+ + FE  G +  + +A+++GG+          
Sbjct: 84  QALLETPQKLFA---LVLTPTRELAFQIGEQFEALGASIGILIAVIVGGVDTVTQSLALA 140

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +R   ++      +    N     +  ++ LV+DEADR+L+M F   ++ I  ++P  R+
Sbjct: 141 KRPHVIVATPGRLVDHLENTKGFNLRALKYLVMDEADRILNMDFEVEVEKILKVIPKERR 200

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T L+SATMT ++ K+    L +P RIEV++   T + ++  ++       K        +
Sbjct: 201 TYLYSATMTKKVAKLERASLNDPVRIEVSSKYQTVDKLKQYYIFIPY---KYKEAYLVYI 257

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  I+FC+   + +     L K GF    +HG + Q  R+  L+ FK  T   +
Sbjct: 258 LNEMAGQTAIVFCSTCVSALRTALMLRKLGFGAVPLHGQMSQAKRLGSLNKFKSKTSTTL 317

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+A+RGLDIP V  V N+DVP ++++Y+HR+GRT RAGR G A T V + D++    
Sbjct: 318 ICTDVASRGLDIPHVDLVLNYDVPTQSKDYVHRVGRTARAGRSGVAVTFVTQYDVEIYQR 377

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+LI KK+       + +   +E+++ AQ    R+   + +K      RK+        
Sbjct: 378 IERLIGKKLPLFETVENDVMLLMERVEEAQKLAKREMKEMEEKKG----RKRKQFDDDDD 433

Query: 420 IPLKESEKISKLQQDIQEN 438
             + ++E+ +  ++ ++  
Sbjct: 434 DEVNDAEESNAFRKKLKRK 452


>gi|260809351|ref|XP_002599469.1| hypothetical protein BRAFLDRAFT_122755 [Branchiostoma floridae]
 gi|229284748|gb|EEN55481.1| hypothetical protein BRAFLDRAFT_122755 [Branchiostoma floridae]
          Length = 623

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 134/381 (35%), Positives = 205/381 (53%), Gaps = 3/381 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F        V+  + +A + KPTPIQ +  P+ LQ  D+ GIAQTG+GKT +++LP +
Sbjct: 110 IEFHYASFPDYVMEEIRNAQFEKPTPIQAQGWPVALQGRDIVGIAQTGSGKTLAYMLPAI 169

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     K+G++  +    + GG P   Q + 
Sbjct: 170 VHINHQPYLERGDGPICLVLTPTRELAQQVQQEASKFGRSSRIKNTCVFGGSPKGPQIRD 229

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG +V I TPGR++D    GK  M     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 230 LERGVEVCIATPGRLIDFLEAGKTNMRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 289

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCALLQQ 237
           QTL++SAT   E+++++E FL+   +I +     +A       V    ++ K        
Sbjct: 290 QTLMYSATWPKEVRQLAEEFLKEYTQINIGALQLSANHNILQIVDVVQEHEKDHKLSRLL 349

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                +     IIF   K+ V +L   + + G+    IHG+  Q  R  +L+ F+ G   
Sbjct: 350 EEIMGEKENKTIIFVETKRRVDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNQFRSGKAP 409

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A+RGLD+ D+  V NFD PN AE+Y+HRIGRT R+ R G A+T     ++K  
Sbjct: 410 ILVATDVASRGLDVSDIKFVINFDYPNSAEDYVHRIGRTARSDRTGTAYTFFTPSNLKQT 469

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             +  ++++    +N  L  +
Sbjct: 470 KDLVSVLQEAQQQVNPRLLEM 490


>gi|194752113|ref|XP_001958367.1| GF10884 [Drosophila ananassae]
 gi|190625649|gb|EDV41173.1| GF10884 [Drosophila ananassae]
          Length = 822

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 133/381 (34%), Positives = 213/381 (55%), Gaps = 3/381 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F + G    V+  +   G+ KPT IQ +  P+ +   D+ G+AQTG+GKT ++VLP +
Sbjct: 151 IEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAV 210

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA Q+     ++G N ++    + GG P   Q + 
Sbjct: 211 VHINNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARD 270

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 271 LERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDR 330

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCALLQQ 237
           Q L++SAT   E+++++E FL N  ++ + + S +A       V    +  K    +   
Sbjct: 331 QVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLVKLL 390

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              S +     IIF   KK V  +  ++ +QG+  CAIHG+  Q+ R  +LS+F+ G   
Sbjct: 391 TDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHS 450

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    +    
Sbjct: 451 ILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNRGTAYTLFTHSNANKA 510

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
           + + +++ +    +N  L ++
Sbjct: 511 NDLIQVLREANQTINPKLMNM 531


>gi|256422110|ref|YP_003122763.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256037018|gb|ACU60562.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 581

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 131/373 (35%), Positives = 217/373 (58%), Gaps = 8/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
            F  LGL   ++  + D G++ PTPIQ K IP++L    D  G+AQTGTGKTA+F LP+L
Sbjct: 3   TFETLGLQEPILKGIQDLGFIAPTPIQEKAIPVLLGGDRDFVGLAQTGTGKTAAFGLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             ++    + R P+ LIL PTREL  Q+ ++ + + K+  ++++  + GG     Q + L
Sbjct: 63  QQIDI---KQRHPQGLILCPTRELCLQITNDLKNFSKHLGDVSIVAVYGGSSIVQQLRDL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD   R  +   N+  +V+DEAD ML+MGF   I NI S  P  + 
Sbjct: 120 KRGVHIVVATPGRLLDIIERKAVNFANVRYVVLDEADEMLNMGFQEDINNILSNTPEEKT 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM  E++++++ ++ +P  +   T  +      +     Y    ++     + +
Sbjct: 180 TWLFSATMPQEVRRIAQKYMSDPFEL---TVGNKNSGNANIEHEYYVVRPREKYAALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +    GIIF   K     +  SL + G++  A+HG++ Q+ R K++  F+E ++Q++
Sbjct: 237 VDYNPEIFGIIFTRTKIESQEIAESLIRDGYNADALHGDLTQQQRDKVMKRFREKSLQVL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ +V HV N+++P+  ENY HR GRT RAG+ G +  ++   D   I  
Sbjct: 297 VATDVAARGIDVDNVTHVINYELPDDVENYTHRSGRTARAGKSGISIAIITGRDTGKIRQ 356

Query: 360 IEKLIEKKVDWLN 372
           IE++I KK   ++
Sbjct: 357 IERVIGKKFTKVD 369


>gi|195163860|ref|XP_002022767.1| GL14575 [Drosophila persimilis]
 gi|194104790|gb|EDW26833.1| GL14575 [Drosophila persimilis]
          Length = 1243

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 135/434 (31%), Positives = 225/434 (51%), Gaps = 15/434 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 538 TWAQCGVSKKEMDVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 597

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +           +I+ PTREL  Q+  +  ++ K+  L    + GG     Q  +L
Sbjct: 598 HILDQPNLDEGDGAIAIIMAPTRELCMQIGKDIRRFSKSLGLRPVCVYGGTGISEQIAEL 657

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RG+++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 658 KRGSEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRP 717

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   L+ P  + V   S   + +E   V    +       L 
Sbjct: 718 DRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKDVEQHVVILNDESK--FFKLL 775

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       + I+F ++++N   L   L K  +   ++HG IDQ  R   + +FK G +
Sbjct: 776 ELLGIYQEAGSIIVFADKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKV 835

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG+ G A+T +  E  ++
Sbjct: 836 RLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRY 895

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I + ++     +  +L +L    +    A+            K   FD ++ N    
Sbjct: 896 AGDIIRALDLSGCLVPAELQTLWTEYKSAQEAEGKKVHTGGGFSGKGFKFDEQEFN---- 951

Query: 417 KSHIPLKESEKISK 430
                +KES+K+ K
Sbjct: 952 ----AVKESKKLQK 961


>gi|167625797|ref|YP_001676091.1| ATP-dependent RNA helicase RhlB [Shewanella halifaxensis HAW-EB4]
 gi|189040042|sp|B0TJ29|RHLB_SHEHH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|167355819|gb|ABZ78432.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 436

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 135/428 (31%), Positives = 225/428 (52%), Gaps = 12/428 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  L  +V  A+ +AG+   TPIQ  ++P++L++ D+ G AQTGTGKT +F++    
Sbjct: 10  KFADFPLHKEVHQALNEAGFEFCTPIQALSLPILLEKKDIAGQAQTGTGKTLAFLVATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      ++  PR +I+ PTRELA Q+A +     K+  L V ++ GG  +E Q K
Sbjct: 70  HLLSTPIPAERQLNQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGEGYEVQRK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+LI T GRI+D+  +G + ++ I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLDKGVDILIGTTGRIIDYVRQGVINVSCIQAVVLDEADRMFDLGFIKDIRFLFRRMPDA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +  L    + T  ++     +       E    +   +T ++     +    ++   L  
Sbjct: 190 KSRLNMLFSATLSMKVQELAYDH-MNEPEKVEIAPNEKTSKNIKEEIFYPSMEEKMPLLL 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +D  +  I+F N K +   +   LE  G     + G++ Q+ R++IL  F +G I 
Sbjct: 249 SLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRAGLLTGDVPQKKRLRILEQFTKGEID 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG+ G + +   +E   ++
Sbjct: 309 ILVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISVSFACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPL---EKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            AIE  I+  +   + D    L  + PP+    K      N   +    PQ       R+
Sbjct: 369 PAIESYIQHSIPVTSYDSDALLDDIPPPVRIHRKPSTHTRNTRDRGASRPQGGQRSGPRR 428

Query: 411 KNYSSQKS 418
            + + + S
Sbjct: 429 HDRTRRHS 436


>gi|118470234|ref|YP_889292.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium smegmatis str. MC2 155]
 gi|118171521|gb|ABK72417.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium smegmatis str. MC2 155]
          Length = 581

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 154/426 (36%), Positives = 237/426 (55%), Gaps = 15/426 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL + P V+ AV D GY  P+ IQ  TIP +L   DV G+AQTGTGKTA+F +P+L+
Sbjct: 22  TFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFAIPILS 81

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++  R   +    L+L PTRELA QVA+ F +YG +      L I  G  +  Q   L 
Sbjct: 82  KIDTSRRDTQ---ALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSGLR 138

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  RG L ++ ++ LV+DEAD ML MGF   ++ I +  P  +Q 
Sbjct: 139 RGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYKQV 198

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++K++  +L +P  + V   ++TAE I   F+                ++
Sbjct: 199 ALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILEVE 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D M   +      + V +   +   +GF+  AI+G+I+Q  R + +S  K+GTI +++
Sbjct: 259 EGDAMIVFVRTKQATEEVADRLKA---RGFAAAAINGDINQAQRERTISALKDGTIDILI 315

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V   +   + +I
Sbjct: 316 ATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSI 375

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD--RRKKNYSSQKS 418
           EK    K+      + +  P +E ++  +    R +      + G D  RR      ++S
Sbjct: 376 EKATRSKL------IEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERES 429

Query: 419 HIPLKE 424
           ++PL +
Sbjct: 430 NVPLAD 435


>gi|59711051|ref|YP_203827.1| ATP-dependent RNA helicase SrmB [Vibrio fischeri ES114]
 gi|59479152|gb|AAW84939.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 413

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 130/385 (33%), Positives = 200/385 (51%), Gaps = 5/385 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL LSP ++ A+ +  Y +PT +Q  TIP  L+  D+   A TGTGK+A+F+LP L 
Sbjct: 4   TFADLDLSPNLLRALEEIDYQRPTQVQAMTIPEALEGKDILASAPTGTGKSAAFLLPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    R   P  + IL PTRELA QVAD   +  K     V  + GGI ++     L 
Sbjct: 64  HLDDFPRREPGPARILILTPTRELAIQVADEARQLAKYTRHKVFTITGGISYQDHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR++++    +     IE L++DEADRMLDMGF P +  ++    + +QT
Sbjct: 124 TTQDIVVATPGRLMEYIEAERFDCRAIETLILDEADRMLDMGFGPVVDRLSKECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LFSAT     ++  + + L  P  I         + I   +        K         
Sbjct: 184 FLFSATLEGRGVEGFTADLLNEPAEINAEPSRRERKKITQWYHRADNMAHKID---LLKN 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F   ++ +  L   LE        I G + Q SR   +S F++GT+ ++
Sbjct: 241 ILTEQAERSIVFVKTRERLAELRGHLETAKIPCAWIQGEMAQESRNNAISRFRDGTVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+PDV HV NFD+P  A+ Y+HRIGRT RAG+ G A +L+   D   ++ 
Sbjct: 301 IATDVAARGIDLPDVSHVINFDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQPMMER 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           + + I++        +  L P  +K
Sbjct: 361 VGRYIKEDDIIKERFIEGLKPKHKK 385


>gi|126173085|ref|YP_001049234.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS155]
 gi|125996290|gb|ABN60365.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 419

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 135/387 (34%), Positives = 210/387 (54%), Gaps = 7/387 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F D  L P ++ ++   G+  PT IQ +TIP  L++ D+   A TGTGKTASF+LP +
Sbjct: 1   MQFEDFQLDPSLLESLNAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPSL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +++  R      R LIL PTRELA+Q+            L +A++ GG+P+  Q + L
Sbjct: 61  QHLIDFPRRFAGQARILILTPTRELASQIHRYACHLATGQGLDIAIVTGGVPYGPQEEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+L+ TPGR++++ ++G      ++IL+IDEADRMLDMGF   +Q I       +Q
Sbjct: 121 AGKVDILVATPGRLMEYLDKGNFNAQEVDILIIDEADRMLDMGFSSVVQAIAIEAQGRKQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT+ +               IE++  +  +E  +       A   +    L   L
Sbjct: 181 NMLFSATL-EGGGVQRFAREVLNDPIEIDVEAPRSEKAKIHQWIHLADDKEHKFALLCHL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+ +K  I+F   +  V +L   L K G +   + G+++Q+ R + LS F +G + ++
Sbjct: 240 LRQEDVKRTIVFVKTRDIVSSLEGQLLKVGIACAFMRGDMEQKKRFQALSRFTKGEVNVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI D+ HV NFD+P  A+ YIHRIGRTGRAG  G A +L    D++ +  
Sbjct: 300 LATDVAARGIDIDDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGK 359

Query: 360 IEKLIEKK-----VDWLNGDLSSLNPP 381
           IE+ IE+      ++ L         P
Sbjct: 360 IERYIEQPLKRRVIEELRPKNKEARTP 386


>gi|242222657|ref|XP_002477039.1| predicted protein [Postia placenta Mad-698-R]
 gi|220723636|gb|EED77767.1| predicted protein [Postia placenta Mad-698-R]
          Length = 389

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 137/374 (36%), Positives = 203/374 (54%), Gaps = 7/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL   ++ A+    +  PT IQ++ +P  LQ  D+ G+A TG+GKTA+F LP+L 
Sbjct: 20  TFKSLGLIDPLLEALEQLNFKIPTEIQVQALPHALQGRDIIGVASTGSGKTAAFALPILQ 79

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L       +     I+ PTRELA Q++   E  G    +    L+GG+   AQ   L +
Sbjct: 80  KL---WEEPKGLFACIMAPTRELAYQISQQIEALGSAMGVRCVTLVGGMDKMAQAVALAK 136

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+ DH  +     +  ++ LV+DEADR+LDM F P I  I   +P  R T
Sbjct: 137 RPHIVVATPGRLNDHLEDTKGFSLRGLKFLVLDEADRLLDMDFGPIIDKILKAIPRERTT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+    L NP R+EV+   ST  T+   ++           +    + 
Sbjct: 197 YLFSATMTTKVAKLQRASLSNPVRVEVSEKYSTVSTLLQYYLFIPLVQKDVHLIYLANIL 256

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +Q    + IIF     +   L   L   GF    +HG + Q +R+  L  FK G  +++V
Sbjct: 257 AQ---NSIIIFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSARLGALGKFKSGGRKVLV 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR GK+ TLV + D++ I  I
Sbjct: 314 ATDVASRGLDIPHVDVVINYDIPTHSKDYIHRVGRTARAGRSGKSITLVTQYDVELIQRI 373

Query: 361 EKLIEKKVDWLNGD 374
           E  I KK++    D
Sbjct: 374 ETTIGKKMELWPTD 387


>gi|326499824|dbj|BAJ90747.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 518

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 115/375 (30%), Positives = 197/375 (52%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 145 EFEDYFLKRELLMGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 204

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++ R  +++    I+ PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 205 KIDQDRNAIQVV---IVVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRLYQ 261

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P I+ +   +P +RQ L
Sbjct: 262 PVHLLVGTPGRILDLTKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIRYLPASRQIL 321

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +++  + +L  P  I          T++           ++       L S
Sbjct: 322 MFSATFPVTVKEFKDKYLPKPYVI----NLMDELTLKGITQFYAFVEERQKVHCLNTLFS 377

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 378 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 437

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 438 TDLFTRGIDIQAVNVVINFDFPKSSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 497

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 498 QELGTEIKPIPPQID 512


>gi|299747858|ref|XP_001837294.2| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Coprinopsis
           cinerea okayama7#130]
 gi|298407711|gb|EAU84911.2| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Coprinopsis
           cinerea okayama7#130]
          Length = 1081

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 126/454 (27%), Positives = 220/454 (48%), Gaps = 7/454 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + ++  GL    +  +    Y  PT IQ + IP ++   DV G+A+TG+GKT +F+LP+ 
Sbjct: 421 IKWSHFGLPASCIEVIKRLNYTAPTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLLPLF 480

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             ++  R   ++  P  L++ PTRELA Q+  + + + K   L      GG P + Q  +
Sbjct: 481 RHIKDQRPLEQMEGPMALVMTPTRELAVQIHKDCKPFLKVLGLRAVCAYGGSPIKDQIAE 540

Query: 119 LERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           L++GA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I + + 
Sbjct: 541 LKKGAEIIVCTPGRMIDLLTANSGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIINNIR 600

Query: 176 FTRQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
             RQT+LFSAT   ++     +   +  +          AE  +   V        +   
Sbjct: 601 PDRQTVLFSATFPKQMDSLARKILRKPLEITVGGRSVVAAEIEQIVEVRAEDTKFNRLLE 660

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   + + D     +IF ++++   NL   L ++G+   ++HG  DQ  R   +++FK G
Sbjct: 661 ILGQMYNDDPECRTLIFVDRQEAADNLLRDLMRKGYLCMSLHGGKDQVDRDSTIADFKAG 720

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G   T +  E  
Sbjct: 721 VVPIVIATSVAARGLDVKQLKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCVTFITPEQE 780

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           ++   I + ++     +  +L  L N  LEK+   +   A               R    
Sbjct: 781 RYSVDIYRALKASEATIPKELEDLANGFLEKVKAGKAQAAGSGFGGKGLDRLDKERDARE 840

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
            +++      E EK +   ++     AD + F  
Sbjct: 841 RAERKAYGEGEDEKPATTTEETTTKQADDMTFGN 874


>gi|317970136|ref|ZP_07971526.1| putative ATP-dependent RNA helicase [Synechococcus sp. CB0205]
          Length = 436

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 164/386 (42%), Positives = 234/386 (60%), Gaps = 8/386 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   +V AVL  GY +P+ IQ + IP VL   DV   AQTGTGKTA F LPML  
Sbjct: 15  FTALGLGRPIVEAVLQKGYSQPSSIQQQCIPAVLAGRDVMAAAQTGTGKTAGFTLPMLER 74

Query: 63  LEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G   R R+ R+L+L PTRELAAQVADN + Y ++ +L   ++ GG+    Q  +L+ 
Sbjct: 75  LRHGPHARGRIVRSLVLTPTRELAAQVADNVKAYSRHLDLRSDVVFGGVKINPQITRLQA 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GAD+L+ TPGR++D   +G + ++ +EILV+DEADRMLDMGFI  IQ I  L+P  RQ L
Sbjct: 135 GADMLVATPGRLMDLVQQGAISLDRVEILVLDEADRMLDMGFIRDIQKILRLLPAKRQNL 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++   L  P +++V   + TA T+EH                     +
Sbjct: 195 LFSATFETSIRRLATGLLHEPVQLQVTPENRTAATVEHILHPCDMARKPDLLCHL---IA 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  ++F   K     +   L  +G +  AIHGN  Q +R + L+ FK G ++++VA
Sbjct: 252 SNDWQQVLVFSRTKHGANRVADRLSAEGMAAAAIHGNKSQGARTRALAGFKSGELRVLVA 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI  + HV N D+PN+AE+Y+HRIGRTGRAG  G A +LVA E+ + + AIE
Sbjct: 312 TDIAARGIDIHQLPHVVNLDLPNQAEDYVHRIGRTGRAGHSGHAVSLVAAEEHELLRAIE 371

Query: 362 KLIEKKV--DWLNGDLSSL--NPPLE 383
           +L  KK+    + G   ++   PPL+
Sbjct: 372 RLTGKKLPKQEIPGFEPTVLSAPPLD 397


>gi|198423018|ref|XP_002125988.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
           [Ciona intestinalis]
          Length = 718

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 149/437 (34%), Positives = 231/437 (52%), Gaps = 4/437 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + +S  ++ A+ +  YV PTPIQ   IP+ L   D+C  A TGTGKTA+F+LP+L  
Sbjct: 173 FQQMNISRPLLKAISEINYVTPTPIQQAAIPIGLLGRDICACAATGTGKTAAFMLPVLER 232

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L        + R L L PTRELA QV        ++ NL + L  GG+  ++Q   L +G
Sbjct: 233 LLYRTQSTPITRVLCLVPTRELAVQVYSVTHHLAQHSNLRICLAAGGLDMKSQEAALRQG 292

Query: 123 ADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR++DH  N     +  +EIL++DEADRMLD  F   +  I  L    RQT+
Sbjct: 293 PDIVIATPGRLIDHLHNTPSFDLQMVEILILDEADRMLDEFFEDQMNEIIKLCSHHRQTM 352

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM++++Q+++   L+NP +I VN+ +  A  +   F+            +   L S
Sbjct: 353 LFSATMSEQVQELAAVSLKNPVKIFVNSNTDVAPFLRQEFIRIRETREGDREAIVAALCS 412

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  + N ++F   KK    +   L   G     +HGN+ Q  R++ L  FK G I ++V 
Sbjct: 413 RSFISNVLVFTQTKKQAHRMHIVLGLLGLKAGELHGNLSQGQRLESLKRFKNGDIDILVC 472

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARGLDI +V  V N  +PN  ++Y+HR+GRT RAG+ G++ +LV + + K +  I 
Sbjct: 473 TDLAARGLDIENVKTVINLTMPNTQQHYVHRVGRTARAGKSGRSVSLVGETERKLLKEIV 532

Query: 362 KLIEKKVD--WLNGD-LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           K  +  V    +  D +S     L +I+    +  +      Q     ++ KK     K 
Sbjct: 533 KFAKNPVKSRVVPPDVISKFRDKLNEIESEVGDVMKMEAQEKQVIASENQVKKAEKIIKG 592

Query: 419 HIPLKESEKISKLQQDI 435
             P K +   +K+Q++ 
Sbjct: 593 EAPEKRAWFQNKMQREF 609


>gi|73969109|ref|XP_860668.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 11 [Canis
           familiaris]
          Length = 651

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 124/380 (32%), Positives = 190/380 (50%), Gaps = 4/380 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 214 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL++  +I V     +A       V    +  K   L+Q + +
Sbjct: 274 LMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 333

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI-DQRSRMKILSNFKEGTIQL 298
              +     IIF   K+   +L   + + G+    IHG+         +          L
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +     +    ++ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K   
Sbjct: 394 IATDVASRGLGNVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQAR 453

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + K++E+    +N  L  L
Sbjct: 454 ELIKVLEEANQAINPKLMQL 473


>gi|296394094|ref|YP_003658978.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus
           rotundus DSM 44985]
 gi|296181241|gb|ADG98147.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM
           44985]
          Length = 548

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 141/372 (37%), Positives = 217/372 (58%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L P V+ AV + GY  P+PIQ KTIP +L   DV G+A TGTGKTA+F LP+L+
Sbjct: 10  TFADLELHPSVLKAVQEVGYETPSPIQAKTIPALLNGQDVVGLAATGTGKTAAFALPVLS 69

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++    R   P+ L+L PTRELA QVA+ F +Y         + +  G  +  Q + L 
Sbjct: 70  RIDPKLRR---PQALVLAPTRELALQVAEAFGRYASKLPQVSVVCVYGGGSYPVQLQALA 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG+ V++ TPGR++DH  RG L + +++ LV+DEAD ML MGF   ++ + +     +Q 
Sbjct: 127 RGSQVIVGTPGRVVDHLERGTLKLGDLKFLVLDEADEMLKMGFQEDVERVLASASQDKQV 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++K+S+ +L++P  + V   ++T+E IE  +                 ++
Sbjct: 187 ALFSATMPGAIRKISKTYLRDPVEVTVKAATTTSENIEQRYTLVAHHRKLDLLTRILEVE 246

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               M   I+F   K+   ++   L  +GF+   ++G+I Q +R + +S  + G I ++V
Sbjct: 247 QFSAM---IVFVRTKQATEDIAERLRARGFAARPLNGDIAQAARERTVSALRAGKIDILV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HVFN+DVP+  E+Y+HRIGRTGRAGR G ++  V   +   I AI
Sbjct: 304 ATDVAARGLDVERITHVFNYDVPHDTESYVHRIGRTGRAGRAGVSYLFVTPRERSMIGAI 363

Query: 361 EKLIEKKVDWLN 372
           E+   + +    
Sbjct: 364 ERATRQALTEAP 375


>gi|213410545|ref|XP_002176042.1| ATP-dependent rRNA helicase rrp3 [Schizosaccharomyces japonicus
           yFS275]
 gi|212004089|gb|EEB09749.1| ATP-dependent rRNA helicase rrp3 [Schizosaccharomyces japonicus
           yFS275]
          Length = 461

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 145/429 (33%), Positives = 233/429 (54%), Gaps = 11/429 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LG+  ++  A     +  P+ IQ + IP  L++ D+ G+AQTG+GKTA+F +P++
Sbjct: 42  VTFKELGVIDEICEACEKLNFKAPSAIQKEAIPAALKQQDIIGLAQTGSGKTAAFAIPVI 101

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +          ++L PTRELA Q+++ FE  G    +   +++GG+    Q   + 
Sbjct: 102 QALWEN---PCPFFGVVLAPTRELAYQISEQFEALGGAMGVKSVVIVGGMDMVTQAVAIS 158

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   +L+CTPGR++DH    K     N++ LV+DEADR+LDM F P I  I  ++P  R+
Sbjct: 159 KKPHILVCTPGRLMDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPIIDKILKVIPKERR 218

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L NP RI V++  ST +T+   ++       K        +
Sbjct: 219 TFLFSATMTSKVEKLQRASLHNPVRIAVSSKFSTVDTLLQKYLFFPF---KHKDTYLVYI 275

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   ++ IIF     +   +   L   GFS   +HG + Q SR+  L+ FK G   ++
Sbjct: 276 VNEMAGQSMIIFTRTVNDTQRVAILLRSLGFSAIPLHGQLSQSSRLGALNKFKSGARSIL 335

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V N+D+P  ++ YIHR+GRT RAGR GK+  LV + D++    
Sbjct: 336 VATDVAARGLDIPLVDAVINYDIPTDSKAYIHRVGRTARAGRSGKSIALVTQYDLEPFLR 395

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE  I+KK++  +     +    E++  AQ     +   I +K     R K     ++ H
Sbjct: 396 IEAAIQKKMEEYDAPKEDVLLLSERVGEAQREAIIQMKEIHEKRKMKGRGK----GKRKH 451

Query: 420 IPLKESEKI 428
             +   E+I
Sbjct: 452 DDMDREEQI 460


>gi|319651117|ref|ZP_08005250.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
 gi|317397171|gb|EFV77876.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
          Length = 463

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 146/387 (37%), Positives = 224/387 (57%), Gaps = 17/387 (4%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
            G+ +PTPIQ + IP+ ++  D+ G AQTGTGKT +F +P+L  ++         + L+L
Sbjct: 1   MGFEEPTPIQAQAIPIGMKGKDMIGQAQTGTGKTTAFGVPLLEQIDLNEG----IQGLVL 56

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QVA+   + G+   +    + GG     Q + L++   ++  TPGR++DH  
Sbjct: 57  APTRELAVQVAEELNRIGQVKGVRTLPVYGGQDITRQIRALKKHPHIIAATPGRLIDHIE 116

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           R  + ++NI+++V+DEAD ML+MGFI  I+ I S +   RQTLLFSATM   +Q ++E F
Sbjct: 117 RKTIRLSNIKMVVLDEADEMLNMGFIEDIERILSEIKGERQTLLFSATMPKRIQSLAEKF 176

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           +Q P+ ++V     T + IE         + K+   +   L    + +  I+F   KK V
Sbjct: 177 MQEPEMVKVKAKEMTVKNIEQ---YYMEVHEKQKFDVLCNLLDIQSPELAIVFGRTKKRV 233

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             +   L K+G+S   IHG+I Q  R +++  FKE TI +MVA+D+AARGLDI  V HV+
Sbjct: 234 DEVVEGLIKRGYSAEGIHGDIPQAKRDQVIRRFKEQTIDIMVATDVAARGLDISGVSHVY 293

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE-----KLIEKKVDWLNG 373
           NFD+P   E+Y+HRIGRTGRAG  G A T V+  +I H+  IE     K+ +K V     
Sbjct: 294 NFDIPQDPESYVHRIGRTGRAGNKGLAITFVSPREIDHLKIIESVTKSKMAKKPVPSFKD 353

Query: 374 DL-----SSLNPPLEKIDIAQHNHARK 395
            +     +++N  +E I+  +H   ++
Sbjct: 354 VVAGNQQATINKLMEVIEKEEHADFKR 380


>gi|316965513|gb|EFV50216.1| ATP-dependent RNA helicase DHH1 [Trichinella spiralis]
          Length = 456

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 183/372 (49%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+P+Q  +IP+ L   D+   A+ GTGKT ++ +P+L 
Sbjct: 72  EFEDFCLKRELLMGLYEKGWEKPSPVQEASIPVALSGQDILARAKNGTGKTGAYSIPLLE 131

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     +   + LI+ PTRELA Q +    +  K+  + V +  GG   +     L  
Sbjct: 132 RIDP---ELHSIQALIIVPTRELAMQTSQICIELSKHLKIKVMVTTGGTSLKDDIVNLSG 188

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD  ++    +N  ++LV+DEAD++L   F   +  + S +P  RQ +
Sbjct: 189 TVHLIIATPGRILDLMDKNIANVNKCKMLVLDEADKLLSQDFKGILDKMISFLPEDRQIM 248

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    ++     F++   R           T+            K+       L  
Sbjct: 249 LYSATFPITVEA----FMKKHMRTPYEINLMDELTLLGVTQYYAYVQEKQKVHCLNTLFR 304

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 305 KLQINQSIIFCNSTQRVELLAKKITELGYSCYYIHSRMAQAHRNRVFHDFRMGYCRNLVC 364

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  IE
Sbjct: 365 SDLLTRGIDIQAVNVVVNFDFPRNAETYLHRIGRSGRFGHLGIAINLITYEDRMTLARIE 424

Query: 362 KLIEKKVDWLNG 373
           + +   ++ +  
Sbjct: 425 RELSTTINPIPK 436


>gi|113969134|ref|YP_732927.1| ATP-dependent RNA helicase SrmB [Shewanella sp. MR-4]
 gi|113883818|gb|ABI37870.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 420

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 134/382 (35%), Positives = 210/382 (54%), Gaps = 4/382 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P ++ ++   G++ PT IQ +T+P  L++ D+   A TGTGKTASF+LP L
Sbjct: 1   MQFEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPAL 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L     R      + IL PTRELA+Q+         +  L +A++ GG+P+  Q + L
Sbjct: 61  QHLIDFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   D+L+ TPGR++++ ++GK    +++IL+IDEADRMLDMGF   ++ I       +Q
Sbjct: 121 KGNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT+ +    +          IE++  +   E  +       A        L   L
Sbjct: 181 NMLFSATL-EGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKDHKIALLCHL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+ +K  I+F   +  V +L   L K G     + G+++Q+ R + LS F +G + ++
Sbjct: 240 LKQEEVKRAIVFVKTRDVVSSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI D+ HV NFD+P  A+ YIHRIGRTGRAG  G A +L    D++ +  
Sbjct: 300 LATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGK 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPP 381
           IE+ IE+ +      +  L P 
Sbjct: 360 IERYIEQPLKR--RIIEELRPK 379


>gi|238798893|ref|ZP_04642359.1| ATP-dependent RNA helicase rhlB [Yersinia mollaretii ATCC 43969]
 gi|238717247|gb|EEQ09097.1| ATP-dependent RNA helicase rhlB [Yersinia mollaretii ATCC 43969]
          Length = 429

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 135/422 (31%), Positives = 210/422 (49%), Gaps = 10/422 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P V  A+   G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPLVTQALESKGFEYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFH 69

Query: 62  ILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L         +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSNPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQTTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 DKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQ-KTGHRIQEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL +F +G + 
Sbjct: 249 TLIEEEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            AIE      +     +    L+ L  P +++   +  +  + N  P++S       +  
Sbjct: 369 PAIETYTGHSIPVSKYNSDALLTDLPAP-KRLARTRTGNGPRRNSAPRRSGAPRNNNRKR 427

Query: 414 SS 415
            S
Sbjct: 428 PS 429


>gi|10039327|dbj|BAB13306.1| PL10-related protein CnPL10 [Hydra vulgaris]
          Length = 628

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 139/460 (30%), Positives = 227/460 (49%), Gaps = 22/460 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F +  L   ++  +  A Y KPTP+Q  +IP++  + D+   AQTG+GKTA+F++P+  
Sbjct: 172 TFDEANLGEIILTNISLAHYTKPTPVQKNSIPIIKAKRDLMACAQTGSGKTAAFLVPILS 231

Query: 60  ----------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                      + + +G  + + P  L+L PTRELA+Q+ D   K+     +   ++ GG
Sbjct: 232 RIFEEGPFENPSNVRQGGKKKQYPIALVLAPTRELASQIYDESRKFVYRSCIRPCVVYGG 291

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q + ++RG  +L+ TPGR++D   RGK+ +  I+ LV+DEADRMLDMGF P I+ 
Sbjct: 292 ADVSTQMRDIDRGCHLLVATPGRLVDMIQRGKVGLECIKFLVLDEADRMLDMGFEPQIRE 351

Query: 170 ITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I       R    QTL+FSAT   E+Q ++ +FL N   + V    ST+E I    V   
Sbjct: 352 IVEKCDMPRTGERQTLMFSATFPKEIQMLARDFLDNYIFLAVGRVGSTSENITQKVVWVE 411

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
               ++  L        D++    +   +  + +        + +   +IHG+  QR R 
Sbjct: 412 EHDKREFLLDLLNASGPDSLTLVFVETKRGADALEQFLFRCPENYHATSIHGDRHQRERE 471

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L++F+ GT  ++VA+ +AA+GLDIP+V HV NFD+P+  E Y+HRIGRTGRAG  G A
Sbjct: 472 QALASFRVGTTPILVATAVAAKGLDIPNVKHVINFDMPSDIEEYVHRIGRTGRAGHTGLA 531

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ-KST 404
            +    ++      +  ++ +    +   L S+          QH  A+K     +    
Sbjct: 532 ISFFNDKNRNVARDLMDILAEAKQEIPSWLESMG-----YQAQQHQAAKKAQKTNRYGGG 586

Query: 405 GFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLG 444
           G     ++Y    +H P  +             N++D   
Sbjct: 587 GGGFGGRDYQPTYNHQPAYQQNNYRGTGGRAHSNNSDDWW 626


>gi|226365506|ref|YP_002783289.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4]
 gi|226243996|dbj|BAH54344.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4]
          Length = 587

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 150/372 (40%), Positives = 218/372 (58%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL +  +V+ A+ D GY  P+PIQ  TIP +L  +DV G+AQTGTGKTA+F +P+L+
Sbjct: 12  TFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPILS 71

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++  +     P+ L+L PTRELA QVA+ F KY  +      L I  G  +  Q   L 
Sbjct: 72  KIDLTQKS---PQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGLR 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  +G L ++ +  LV+DEAD ML MGF   ++ I S  P  +Q 
Sbjct: 129 RGAHVVVGTPGRVIDHLEKGTLDLSKLAYLVLDEADEMLKMGFQEDVERILSDTPEYKQV 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++K+S+ +L +P  I V + +STA  I   +V    Q           ++
Sbjct: 189 ALFSATMPGAIRKISKQYLHDPVEITVKSKTSTASNISQRYVQVAHQRKLDALTRVLEVE 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               M   IIF   K+   +L   L  +GFS  AI+G+I Q  R + +   K G + ++V
Sbjct: 249 DFGAM---IIFVRTKQATEDLAERLRSRGFSAAAINGDIVQAQRERTIGQLKSGALDILV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G+A   VA  +   + AI
Sbjct: 306 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERHLLKAI 365

Query: 361 EKLIEKKVDWLN 372
           EK   + +  + 
Sbjct: 366 EKATRQPLAEMQ 377


>gi|88861236|ref|ZP_01135868.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2]
 gi|88816717|gb|EAR26540.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2]
          Length = 422

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 132/419 (31%), Positives = 221/419 (52%), Gaps = 7/419 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  ++P+V+  +   G+   TPIQ + +P  +++ D+ G AQTGTGKT +F+     
Sbjct: 10  KFADFNIAPEVIAGLNAHGFEFCTPIQAQCLPYAIEKRDIAGQAQTGTGKTLAFLTATCH 69

Query: 62  IL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L +  + + + PR LI+ PTRELA Q+  + +    + NL + L+ GG  +E Q  +LE
Sbjct: 70  HLLQSSKGQGKHPRALIMAPTRELAVQIHKDAKILAPHCNLNLGLVYGGEEYEKQLAQLE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+LI T GR++D + +G   +N IE++V+DEADRM D+GFI  I+ +   +P   Q 
Sbjct: 130 KGVDILIGTTGRLIDLYKQGAYSLNEIEVVVLDEADRMFDLGFIKDIRYLFRRMPDATQR 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L    + T   +     F      I V    S  +T +      +         L   + 
Sbjct: 190 LNLLFSATLSYRVQELAFEHMTNPIHVQVEPSQ-KTGKRIVEELFHPAQVDKIPLLLTII 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  I+F N K     +   L+     V  + G+++Q+ R+ IL  F  G +  +V
Sbjct: 249 EEEWPEKAIVFSNTKHMCETVYAWLKAADHRVGLLTGDVNQKKRISILEQFTAGNLDFLV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL IP+V HVFNFD+P+  E+Y+HRIGRTGRAG  GKA +   ++   ++  I
Sbjct: 309 ATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTGRAGASGKAISFACEQYAYNLQPI 368

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           E+ +E  +   + D ++L       DI      ++ +P   +++     + N +  ++ 
Sbjct: 369 EEYVEHVIPLSHYDKTALLD-----DIPAPRIQKRRSPQGSQNSRSGGNRSNNARPRAR 422


>gi|221131953|ref|XP_002164829.1| PREDICTED: similar to LOC556764 protein [Hydra magnipapillata]
          Length = 674

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 131/380 (34%), Positives = 202/380 (53%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
            F +L +   V  A+    + +PT IQ +   + L   ++ GIAQTG+GKT SFVLP  +
Sbjct: 107 SFDELCIPDYVGDALRKFNFKEPTAIQSQGFSVALSGRNMVGIAQTGSGKTISFVLPAVI 166

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +    +   P  L+L PTRELA QV     ++G    +    + GG     Q + L
Sbjct: 167 HINNQPPLNQGDGPICLVLCPTRELAIQVQSVAGQFGLTTRVRSTCIYGGASKGPQIRDL 226

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG+++++ TPGR++D     K+ +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 227 ERGSEIVVATPGRLIDLIEIRKISLKRVTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQ 286

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQL 238
            L++SAT   E++K++E+FL +  +I + +    A       V    +Y K    +    
Sbjct: 287 VLMWSATWPKEVRKLAEDFLTDYIQINIGSSDIHANHNILQIVDVCEEYEKDRKLVKLLE 346

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               +     IIFC  K+   ++   L K G+    IHG+  Q  R  +L  F+ G   +
Sbjct: 347 EIMGEKENKTIIFCETKRKTDDITRRLRKDGWPAMCIHGDKSQPEREWVLKEFRSGKAPI 406

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDIPD+  V N+D PN  E+YIHRIGRT RAG  G A+T     + K+  
Sbjct: 407 LIATDVASRGLDIPDINFVVNYDYPNSGEDYIHRIGRTARAGNTGTAYTFFTSANGKYAA 466

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + K++E+    +   L+ L
Sbjct: 467 ELLKVMEEANQTIPPKLAEL 486


>gi|242021756|ref|XP_002431309.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212516577|gb|EEB18571.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 675

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 129/381 (33%), Positives = 204/381 (53%), Gaps = 3/381 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+D      V   +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP +
Sbjct: 122 MYFSDANWPDYVQREIQKQGFTEPTAIQAQGWPIALSGMDMVGIAQTGSGKTLAYILPAI 181

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA Q+      +G +  +    + GG P   Q + 
Sbjct: 182 VHINHQPRLLRGEGPIVLVLAPTRELAQQIQQVACDFGTSSAVRNTCIFGGAPKMLQARD 241

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G ++ I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 242 LESGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 301

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQ 237
           Q L++SAT   E+++++E FL +  +I + +   +A       V   ++Y K+   L   
Sbjct: 302 QVLMWSATWPKEVRRLAEEFLNDYVQINIGSLQLSANHNILQIVDVCSEYEKQTKLLKLL 361

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              + +     +IF   KK V  +  ++ + G+   AIHG+  Q  R  +L+ F+ G + 
Sbjct: 362 NEIANEPETKTMIFVETKKKVDEIARAVTRYGYQALAIHGDKSQSDRDYVLNQFRCGRVN 421

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+ DV  V NFD PN +E+Y+HRIGRTGR  + G A+T     ++   
Sbjct: 422 ILVATDVAARGLDVDDVKFVINFDYPNNSEDYVHRIGRTGRHDKTGTAYTFFTPSNVNKA 481

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             +  ++++    +N  L  L
Sbjct: 482 GDLVAVLQEANQVVNPKLYEL 502


>gi|282897303|ref|ZP_06305305.1| DEAD/DEAH box helicase-like protein [Raphidiopsis brookii D9]
 gi|281197955|gb|EFA72849.1| DEAD/DEAH box helicase-like protein [Raphidiopsis brookii D9]
          Length = 497

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 151/471 (32%), Positives = 244/471 (51%), Gaps = 33/471 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LG+SP+    + + G+  PT IQ + IP +L   DV G +QTGTGKTA+F LP+L
Sbjct: 4   ITFQELGISPERATHLENMGFTTPTNIQSQAIPQLLAGRDVVGQSQTGTGKTAAFSLPIL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  +  V+    L+L PTRELA QV D   ++  +  L V  + GG   + Q  +L+
Sbjct: 64  ERLDPNKRAVQ---ALVLTPTRELAMQVHDAISQFMGDSELRVLAIYGGQSIDRQMIQLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++D   RG L ++ ++  V+DEAD ML MGFI  +  I S  P  RQT
Sbjct: 121 RGVHVVVGTPGRVIDLLERGSLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPQERQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++++   FL +P  + V  P +T   I          ++K  A   Q + 
Sbjct: 181 ALFSATMPPSIRQLVNKFLNSPVTVTVEQPKATPTKINQVAYLIPRHWTK--AKALQPIL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  +IF   ++    L + L+  G SV   HG++ Q++R ++L+ F+   ++ +V
Sbjct: 239 EMEDPETALIFVRTRRTAAELTNQLQSAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK----- 355
           A+D+AARGLD+  + HV NFD+P+  E Y+HRIGRTGRAG+ G A +LV   + +     
Sbjct: 299 ATDIAARGLDVDLLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQAF 358

Query: 356 -------------------HIDAIEKLIEKKVDWLNGD-LSSLNPPLEKIDIAQHNHARK 395
                                  I+KL E+  + L G+ L+S  P + ++      +  +
Sbjct: 359 ERHNRQNWQVLSIPTRAQIEAKHIQKLKEQVSEALAGERLASFLPIISELT---EKYDAQ 415

Query: 396 NNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFR 446
                     +D+ +  +      IP++E     K+ +  +  D + +G  
Sbjct: 416 AIAAAALQLAYDQTRPAWLQNGVDIPVEEPTPKPKINKRRESGDGNGVGRG 466


>gi|107103467|ref|ZP_01367385.1| hypothetical protein PaerPA_01004537 [Pseudomonas aeruginosa PACS2]
          Length = 449

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 145/372 (38%), Positives = 220/372 (59%), Gaps = 5/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   G+  PTPIQ + IP  L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV  +   YG++  L  A+  GG+    Q  K
Sbjct: 61  QRLTLEGPQVAANSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD + +  +    ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D ++ ++   L++P  IEV+  ++ A+++    V    +   +       
Sbjct: 181 QTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQ 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     ++F   +K+V  L   L++QG +  +IHG+  Q +R++ L  FK G + L
Sbjct: 241 ANRW---HQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDL 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLA 357

Query: 359 AIEKLIEKKVDW 370
           AIE LI + +  
Sbjct: 358 AIETLIGQTLQR 369


>gi|54295187|ref|YP_127602.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens]
 gi|53755019|emb|CAH16507.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens]
          Length = 589

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 146/372 (39%), Positives = 225/372 (60%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+    S  +  A+ D  ++ P+PIQ +TIPL+LQ  D   +AQTGTGKTA+F LP+L 
Sbjct: 7   NFSTFNFSSALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            L      +   + LIL PTRELA QVA+ FE   K   N+T+A+L GG  +  Q K+L 
Sbjct: 67  NL---SPEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGRILDH ++G LL+NN++  ++DEAD ML MGFI  ++ I   +P  +Q 
Sbjct: 124 SGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQM 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   +++++  +L +P  IE+   ++T ++IE  F+           +    ++
Sbjct: 184 ALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVLEVE 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   I+F   K +   +   L++ G    AIHG+I Q  R +I++ FK+G I ++V
Sbjct: 244 DYQGV---IVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV N+D+P+  E Y+HRIGRTGRAGR G     V  ++ + I +I
Sbjct: 301 ATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSI 360

Query: 361 EKLIEKKVDWLN 372
           E+   ++++ + 
Sbjct: 361 ERHTRQRIEKVQ 372


>gi|75321947|sp|Q5Z6G5|RH35B_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 35B
 gi|53793229|dbj|BAD54454.1| putative DEAD-box protein abstrakt [Oryza sativa Japonica Group]
 gi|125598365|gb|EAZ38145.1| hypothetical protein OsJ_22496 [Oryza sativa Japonica Group]
          Length = 619

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 131/407 (32%), Positives = 209/407 (51%), Gaps = 18/407 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L   ++ A+   G  KPTPIQ++ +P+ L   D+ GIA TG+GKT  FVLP++ 
Sbjct: 174 SFGDLRLPEPILRALRGKGIEKPTPIQVQGLPVALSGRDMIGIAFTGSGKTLVFVLPLIM 233

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
                 +         P  LI+ P+RELA Q  +  E +           +   L IGG+
Sbjct: 234 AALQEEILMPIVPGEGPFGLIVCPSRELARQTHEVIEMFLAPLMEAGYPEIRPLLCIGGV 293

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q + +++G  +++ TPGR+ D  ++ K+ ++N   L +DEADR++D+GF   I+ +
Sbjct: 294 DMRTQMEVVKKGVHIVVATPGRLKDLLSKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 353

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM +++Q     F ++     +      A       +       +
Sbjct: 354 FDHFKAQRQTLLFSATMPEKIQN----FAKSALVKPIIVNVGRAGAANLDVIQEVEYVKE 409

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    ++FC  K +V  +   L  +G    AIHG  D   R     +
Sbjct: 410 EARIIYLLECLQKTPPPVLVFCEHKADVDYIQEFLLLKGVEAVAIHGGKDDEERKDAFKS 469

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK     ++VA+D+A++GLDIPD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 470 FKASEKDVLVATDVASKGLDIPDIQHVINYDMPAEIENYVHRIGRTGRRGKTGVATTFIN 529

Query: 351 KEDIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLE--KIDIAQHNHAR 394
           K   +  +  +++L+ +    L   L+ L+ P E  K+ IAQ +  +
Sbjct: 530 KNQTETTLLDLKQLLIESKQRLPPILADLDDPQEDDKVAIAQQSGVK 576


>gi|308050782|ref|YP_003914348.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307632972|gb|ADN77274.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 444

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 129/381 (33%), Positives = 196/381 (51%), Gaps = 4/381 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M FAD  L P++  A+  +GY KPT IQ   +   L+  D+   A TGTGKTA+++LP +
Sbjct: 1   MSFADFDLDPRLEKALAKSGYTKPTTIQRAVLEAALEERDILASAPTGTGKTAAYLLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R      R L+L PTRELA QV     K      L++  ++GG  ++     L
Sbjct: 61  QHLLDFPRREAGHARVLVLTPTRELAQQVEAYGRKLLAGTQLSIGAIVGGKDYQHDADLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++  D+L+ TPGR++ +    K     +EI+VIDEADRMLDMGF+P +  I +   + +Q
Sbjct: 121 KQNMDILVATPGRLIMYLEDEKFDPRQVEIMVIDEADRMLDMGFMPVVDRIAAETRWRKQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT+ +     +         +  +     +E  +       A        L + L
Sbjct: 181 TMLFSATL-EGAGLDNFVRELLNDPVHCDAKPPRSERKKITQYYYRADDMDHKFKLLKRL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       +IF   +     L   L         + G + Q  R   L  F+EG +Q++
Sbjct: 240 LADPECTRAMIFTKTRDRATELHAKLFAAKIRTAVLQGAMVQGKRDDALERFREGRVQVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI +V HV NFD+P  +E Y+HRIGRT RAG  G A  LV   D+  +D 
Sbjct: 300 VATDVAARGIDIANVTHVINFDLPRTSEVYLHRIGRTARAGAKGMALNLVEAHDMPMLDR 359

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           I++ I++ +      + SL P
Sbjct: 360 IQRYIDEPIKV--RVIESLRP 378


>gi|88857449|ref|ZP_01132092.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family protein [Pseudoalteromonas
           tunicata D2]
 gi|88820646|gb|EAR30458.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family protein [Pseudoalteromonas
           tunicata D2]
          Length = 435

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 152/422 (36%), Positives = 239/422 (56%), Gaps = 5/422 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F     +P+++ A+ + GY + +P+Q   IP V + HDV   AQTGTGKTA+F LP+L
Sbjct: 1   MNFKSFSFAPEILRAIDECGYTELSPVQRLAIPHVRRGHDVLANAQTGTGKTAAFALPIL 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
              I           + L+L PTRELA Q+A++FE+YGK  +++VA + GG+  + Q  K
Sbjct: 61  QKLIDTPTPRVASNAKALVLAPTRELAEQIANSFERYGKYLDISVAAIFGGVSHKGQAIK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ GAD+++ TPGR+L+H     + ++N+  LV+DEADRMLDMGFI  I+ + + V   R
Sbjct: 121 LKAGADIIVATPGRLLEHIQMCNVSLSNVSFLVLDEADRMLDMGFINDIKMLMAAVNDER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    +++ S + L+ PK ++    +STAET++H     Y    ++   L   
Sbjct: 181 QTLLFSATYPSSMKQFSASVLKQPKIVQATKDNSTAETVQH---VVYPVEERRKNELLSE 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +      ++F N K+   ++   L + G S    HG+  Q +R + L  FKEG +++
Sbjct: 238 LIGRKNWHQVLVFVNMKETASSVVEELNQFGISAAVCHGDKTQGARRRALREFKEGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDI  +  V N D+P  AE+Y+HRIGRTGRAG  G+A + V++E+   + 
Sbjct: 298 LVATEVAARGLDIVGLERVINVDLPFLAEDYVHRIGRTGRAGNIGQAVSFVSREEEHTLA 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IE LI   +  +      ++     I       + +       S G   + +     +S
Sbjct: 358 NIEALIGTSIRRIYYPGFEVSSRDNLIKTIHSTPSHRRRKARVNSVGGQEQGEARIKNRS 417

Query: 419 HI 420
            I
Sbjct: 418 KI 419


>gi|169628494|ref|YP_001702143.1| cold-shock DEAD box protein A homolog (ATP-dependent RNA helicase
           DEAD homolog) [Mycobacterium abscessus ATCC 19977]
 gi|169240461|emb|CAM61489.1| Probable cold-shock DEAD box protein A homolog (ATP-dependent RNA
           helicase DEAD homolog) [Mycobacterium abscessus]
          Length = 598

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 143/371 (38%), Positives = 222/371 (59%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL ++P+V+ AV D GY  P+ IQ  TIP +L   DV G+AQTGTGKTA+F +P+L
Sbjct: 23  VTFADLHIAPEVLRAVSDVGYETPSAIQAATIPPLLAGSDVVGLAQTGTGKTAAFAIPIL 82

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + ++      +    L+L PTRELA QVA+ F +YG +      L I  G  +  Q   L
Sbjct: 83  SKIDLTSKDTQ---ALVLAPTRELALQVAEAFGRYGAHMPKLNVLPIYGGQSYVVQLAGL 139

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA V++ TPGR++DH  RG L +++++ LV+DEAD ML MGF   ++ I +  P  +Q
Sbjct: 140 KRGAQVVVGTPGRVIDHLERGTLDLSHLDYLVLDEADEMLTMGFAEDVERILADTPEYKQ 199

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   ++++++ +L +P  I+++  +STAE I   F+                +
Sbjct: 200 VALFSATMPTTIRRLTKKYLHDPVEIKIDAKTSTAENITQRFIQVAGPRKMDALTRILEV 259

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++ + M   +      + V +   +   +GF+  AI+G+I+Q  R + ++  K GTI ++
Sbjct: 260 ETFEAMIVFVRTKQATEEVADKLKA---RGFAAAAINGDINQSQRERTINALKAGTIDIL 316

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  +   + A
Sbjct: 317 VATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTAVLFVSPRERHLLKA 376

Query: 360 IEKLIEKKVDW 370
           IEK    K+  
Sbjct: 377 IEKTTGAKLAE 387


>gi|322824367|gb|EFZ29795.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 395

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 125/376 (33%), Positives = 204/376 (54%), Gaps = 6/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL  +++  +   GY KPT IQ + I    Q  D+   A +G+GKT++F + +L 
Sbjct: 24  TFEAMGLKEELLRGMYGYGYKKPTAIQKRFIVPFTQSRDLVAQASSGSGKTSAFCICLLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           + +      +    L+L PTRELA Q  D     G +  L     IGG   E   ++LE 
Sbjct: 84  VCQSALRETQG---LVLSPTRELAMQTQDLCNNIGHHMGLAAYASIGGKSVEDDIRRLES 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L +N+++ LV+DEAD ML  GF   I +    +    Q +
Sbjct: 141 GVQIVSGTPGRVFDMIKRRHLRVNHLKTLVLDEADEMLGKGFKAQI-HDIYRMIPPLQVV 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  ++ +++E F+  P RI V     T ++I   FVA   + +K   L       
Sbjct: 200 LVSATLPVDVLEMTEKFMTEPVRILVRRDEITVDSIMQYFVAVDEEKNKFETLCDL--YD 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+ + +IFCN +K V  L   + K+ FSV  +HG++ Q  R +I+ NF+EG  +++++
Sbjct: 258 TLTIAHAVIFCNTRKKVEQLAKKMRKEKFSVSCMHGDMPQAERDEIMRNFREGKSRVLIS 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL +RG+D+  V  V N+D+P   E YIHRIGRTGR GR G A + V  ++++ +  +E
Sbjct: 318 TDLWSRGIDVEQVSLVLNYDLPFSREQYIHRIGRTGRMGRKGLAISFVKHDELRLLRDVE 377

Query: 362 KLIEKKVDWLNGDLSS 377
           +    +++ L  +++ 
Sbjct: 378 QFYATQIEELPANIAD 393


>gi|160882942|ref|ZP_02063945.1| hypothetical protein BACOVA_00904 [Bacteroides ovatus ATCC 8483]
 gi|156111625|gb|EDO13370.1| hypothetical protein BACOVA_00904 [Bacteroides ovatus ATCC 8483]
          Length = 644

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 144/412 (34%), Positives = 233/412 (56%), Gaps = 17/412 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP+L
Sbjct: 3   TFEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++    + R+P++LIL PTREL  Q+A +   Y K  +    L + G    ++Q + L
Sbjct: 63  QQIDV---KNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD   R  + ++ I  +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KRGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILADVPQERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+N+L+N K I +   +   E+  +     Y   +K      + +
Sbjct: 180 TLLFSATMSPEIARISKNYLRNAKEITIGRKN---ESTNNVKHVVYTVQAKDKYEALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+
Sbjct: 237 VDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRD 356

Query: 360 IEKLIEKK--VDWLN-------GDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           IE++I KK  V  +          L  +   LEK+ + +   A     I +K
Sbjct: 357 IERIISKKFIVGEMPTAAGICQKQLIKVIDDLEKVKVNEEEIADFMPEIYRK 408


>gi|126654509|ref|XP_001388425.1| ATP-dependent RNA helicase [Cryptosporidium parvum Iowa II]
 gi|126117365|gb|EAZ51465.1| ATP-dependent RNA helicase, putative [Cryptosporidium parvum Iowa
           II]
          Length = 406

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 119/376 (31%), Positives = 188/376 (50%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+FV+P+L 
Sbjct: 34  DFEDYFLKRELLMGIYEKGFERPSPIQEESIPVALAGKDILARAKNGTGKTAAFVIPLLE 93

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +     +  + + LIL PTRELA Q +   ++ GK+ N+   +  GG        +L  
Sbjct: 94  KINT---KKNIIQGLILVPTRELALQTSSIVKQLGKHINVQCMVSTGGTSLRDDILRLNN 150

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL+ TPGRILD  N+    ++   + ++DEAD++L   F P I+ +   +P  RQ L
Sbjct: 151 PVHVLVGTPGRILDLSNKKVCNLSGCFMFIMDEADKLLSPEFQPIIEELIEFLPKERQIL 210

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    ++     F                 T++           K+       L S
Sbjct: 211 LYSATFPVTVKG----FKDKYLANAHEINLMDELTLKGVTQYYAFVEEKQKLHCLNTLFS 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 267 KLQINQAIIFCNSVTRVELLAKKITELGSSCFYIHARMLQSHRNRVFHDFRNGACRCLVS 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  L+  ED  ++  IE
Sbjct: 327 SDLITRGIDIQSVNVVINFDFPKYSETYLHRIGRSGRFGHLGLAINLITYEDRYNLYRIE 386

Query: 362 KLIEKKVDWLNGDLSS 377
           K +  ++  +   + S
Sbjct: 387 KELATEISPIPAQIDS 402


>gi|77461141|ref|YP_350648.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1]
 gi|77385144|gb|ABA76657.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 446

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 152/375 (40%), Positives = 220/375 (58%), Gaps = 9/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ ++   GY  PTP+Q + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFATLGLIEPLLRSLEKLGYQTPTPVQAQAIPVVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L     +V     R LIL PTRELA QV +   +Y +N  L    + GG+    Q  K
Sbjct: 61  QLLAMEGPKVTANSVRALILVPTRELAEQVHEAVRQYAENLPLRTYAVYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+L+ TPGR+LD F +  L  N ++ LV+DEADRMLD+GF   + NI   +P  R
Sbjct: 121 LRGGVDLLVATPGRLLDLFRQNALKFNQLQTLVLDEADRMLDLGFSEELANIYRALPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D+++ ++   L +P+ IEV+  +  A T+            K+   L   
Sbjct: 181 QTLLFSATFSDDIRLLAGQMLNDPQSIEVSPRNVAANTV---KQWVVTVDKKRKPELFVH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  ++  K  ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +Q+
Sbjct: 238 LMRKNKWKQVLVFAKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKLSEVQI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V NFD+P  AE+YIHRIGRTGRAG  G+A +LV  +++  + 
Sbjct: 298 LVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADEVNMLS 357

Query: 359 AIEKL----IEKKVD 369
           AIE L    ++++++
Sbjct: 358 AIEMLTRSTLKREIE 372


>gi|319411699|emb|CBQ73743.1| probable ATP-dependent RNA helicase DHH1 [Sporisorium reilianum]
          Length = 491

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 114/376 (30%), Positives = 185/376 (49%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + +AG+ +P+PIQ + IP+ L   D+   A+ GTGKTA++V+P L 
Sbjct: 41  EFEDYFLKRELLMGIFEAGFERPSPIQEEAIPIALTGRDILARAKNGTGKTAAYVIPSLE 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   + +++     +L PTRELA Q +   +  GK+  + V +  GG        +L +
Sbjct: 101 KLNTKKNKIQAV---LLVPTRELALQTSQVAKTLGKHLGVEVMVTTGGTTLRDDILRLGQ 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G   ++     V+DEAD++L   F P ++ + S +P  RQ +
Sbjct: 158 TVHMLVGTPGRILDLAGKGVADLSQCTTFVMDEADKLLSPEFTPVMEQLLSFLPKERQVM 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F                 T+            ++       L S
Sbjct: 218 LFSATFPLIVKD----FKDRNMVKPYEINLMDELTLRGVTQYYAFVEERQKVHCLNTLFS 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S    H  + Q  R ++  +F+ G  + +V 
Sbjct: 274 KLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQAHRNRVFHDFRNGACRNLVC 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  IE
Sbjct: 334 SDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIE 393

Query: 362 KLIEKKVDWLNGDLSS 377
           + +  ++  +  ++  
Sbjct: 394 QELGTEIQPIPSNIDK 409


>gi|316968374|gb|EFV52655.1| eukaryotic initiation factor 4A-III [Trichinella spiralis]
          Length = 970

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 135/451 (29%), Positives = 222/451 (49%), Gaps = 34/451 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L  +++  +   G+ KP+ IQ + I  ++   DV   +Q+GTGKTA+F + +L 
Sbjct: 41  TFEEMNLKRELLRGIYAYGFNKPSMIQKRAIRPIVSGRDVIAQSQSGTGKTATFSIGLLQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++      +    L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 101 VIDTQLRETQA---LVLAPTRELAQQIQKVVLALGDRMNVQAHACIGGTNVGEDIRKLDY 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG---------FIPYIQNITS 172
           G  V++ TPGR+ D   R  L  +++++ V+DEAD ML  G         F   I +I  
Sbjct: 158 GQHVVVGTPGRVFDMITRQNLRTDSLKVFVMDEADEMLTKGNELLYLILGFKDQIYDIYR 217

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +P   Q ++ SAT+  E+ +++  F+  P RI V     T E I   FV    +  K  
Sbjct: 218 FLPPGIQVVVISATLPHEILEMTGKFMTEPVRILVKRDELTLEGIRQYFVHVEREDWKFE 277

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L         T+   ++FCN +  V  L   +++  F+V AIHG +DQ+ R +++  F+
Sbjct: 278 TLCDL--YDSITISQAVVFCNTRHKVEWLDEKMKESNFTVGAIHGEMDQKDRNEVVRKFR 335

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +G  ++++++D+ +RGLDIP V  V N+DVP   E Y+HRIGR+GR GR G A      E
Sbjct: 336 DGIYRVLISTDVWSRGLDIPGVSLVINYDVPTNREAYLHRIGRSGRYGRKGCAINFATTE 395

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           DI  +  IE     ++D +         P+  I + +   A   N I           +N
Sbjct: 396 DIPTLLEIESYYGTQIDEM---------PMNDILVNRLVLAATKNGI-----------RN 435

Query: 413 YSSQKSHIPLKESEKISKLQQDIQENDADSL 443
                S+I +       KL++D++E+  D +
Sbjct: 436 VQENISYINIDRPFSAMKLKKDVEEDLVDQI 466


>gi|170058665|ref|XP_001865019.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167877695|gb|EDS41078.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 686

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 131/383 (34%), Positives = 206/383 (53%), Gaps = 3/383 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           + F D GL   ++   +  G+ KPT IQ + +P+ +   D+ GIAQTG+GKT ++V P  
Sbjct: 116 ITFGDCGLPDYILEETVKQGFTKPTAIQAQGMPIAMTGRDMVGIAQTGSGKTLAYVAPAL 175

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                ++   R   P  LIL PTRELA Q+      +G+  N     + GG P   Q + 
Sbjct: 176 VHIQHQETVHRGDGPIALILAPTRELAQQIQQVANDFGQRTNTNNTCVFGGAPKGPQIRD 235

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERGA+++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 236 LERGAEIVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIMGQIRPDR 295

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQ 237
           Q L++SAT   E++ ++E FL +  +I + + + +A       V     Y K    +   
Sbjct: 296 QVLMWSATWPKEVRNLAEEFLNDYIQINIGSLNLSANHNILQIVDVCEDYEKDQKLMKLL 355

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              S +     I+F   K+ V ++  S+ + G+   +IHG+  Q+ R  +L+ F+ G   
Sbjct: 356 TEISAEAETKTIVFVETKRRVDDITRSICRNGWRAVSIHGDKSQQERDYVLNAFRNGRQG 415

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    +    
Sbjct: 416 ILVATDVAARGLDVEDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTNSNANKA 475

Query: 358 DAIEKLIEKKVDWLNGDLSSLNP 380
             +  ++ +    +N  L  +  
Sbjct: 476 GDLINVLREANQVINPKLVEMTK 498


>gi|156550255|ref|XP_001602397.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 715

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 117/395 (29%), Positives = 204/395 (51%), Gaps = 9/395 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA- 68
           P ++  +    + KP+PIQ +  P++L   D+ GIAQTGTGKT +F+LP L  ++     
Sbjct: 283 PDILVEIRKQNFEKPSPIQCQAWPILLSGKDMIGIAQTGTGKTLAFLLPALIHIDNQDTP 342

Query: 69  --RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
                 P  L++ PT    A   +        + +    + GG   + Q   + +G +++
Sbjct: 343 RSERSGPTVLVMAPT-RELALQIEKEVNKYYYHGIKAVCVYGGGDRKKQMNIVSKGVEIV 401

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      L +  +  LV+DEADRMLDMGF P I+     +   RQT++ SAT
Sbjct: 402 IATPGRLNDLIQTEVLDVKCVSYLVLDEADRMLDMGFEPQIRKSLLDIRPDRQTVMTSAT 461

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
               +++++E+++++P  + V +    A       +    +  K   L +    +     
Sbjct: 462 WPPGVRRLAESYMKSPITVCVGSLDLKAVHSVTQKIWIVDEEEKTDVL-KDFFHNMAPSD 520

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+F  +K  V ++   L   G +  +IHG  +Q  R + L + K G + +++A+D+A+
Sbjct: 521 KVIVFFGKKCKVDDIGSDLALSGVACQSIHGGREQADREQALEDIKTGDVNILLATDVAS 580

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RG+DI D+ HVFN+D P   E Y+HR+GRTGRAG+ G++ +LV + D      + K++E+
Sbjct: 581 RGIDIEDITHVFNYDFPRDIEEYVHRVGRTGRAGKTGESISLVTRRDWGLTKELIKILEE 640

Query: 367 KVDWLNGDLSSLNPPLE----KIDIAQHNHARKNN 397
               +  +L S++   E    K D  + +  R+ +
Sbjct: 641 AEQEIPTELYSMSERYEAMKKKRDEERGDGDRRES 675


>gi|73965229|ref|XP_861744.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 10 [Canis
           familiaris]
          Length = 616

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 135/443 (30%), Positives = 221/443 (49%), Gaps = 8/443 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 154 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 213

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 214 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393

Query: 298 LMVASDLAAR--GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +++A+D+A+R  GLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK
Sbjct: 394 ILIATDVASRGLGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIK 453

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKN 412
            +  +  ++ +    +N  L  L                  R++     K  GF+  +  
Sbjct: 454 QVSDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDR 513

Query: 413 YSSQKSHIPLKESEKISKLQQDI 435
            +  + +  L + +  +K Q  +
Sbjct: 514 ENYDRGYSSLLKRDFGAKTQNGV 536


>gi|323447210|gb|EGB03146.1| hypothetical protein AURANDRAFT_39444 [Aureococcus anophagefferens]
          Length = 418

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 114/375 (30%), Positives = 187/375 (49%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+P+Q + IP++LQ  +V   A+ GTGKTA+F++P   
Sbjct: 45  EFEDYFLKRELLMGIFEKGFERPSPVQERAIPIILQNRNVLARAKNGTGKTAAFIIP--- 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            LEK     +  + LIL PTRELA Q +    + GK+  +   +  GG   +    +L +
Sbjct: 102 CLEKTDPSKKFIQVLILIPTRELALQTSAVVRELGKHMKVECMVSTGGTSLKDDIMRLYK 161

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL+ TPGRILD   +G   +     +++DEAD++L   F P ++ +       RQ  
Sbjct: 162 PVHVLVGTPGRILDLSEKGVAALGRCHTVIMDEADKLLSPEFEPLLEKLVHHCSPERQIC 221

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++   E F+ NP  I          T++           ++       L +
Sbjct: 222 LFSATFPVTVKNFKEKFIHNPYEI----NLMDDLTLKGITQFYAFVEERQKVHCLHTLFT 277

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   +IFCN    V  L   + + G+S   IH  + Q  R ++   F+ G+ + +V+
Sbjct: 278 KLEINQSVIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGSTRHLVS 337

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR GR G  G A  L+  +D  ++  IE
Sbjct: 338 SDLFTRGIDIQSVNVVINFDFPKTSETYLHRIGRAGRFGHLGLAINLITFDDRFNLYRIE 397

Query: 362 KLIEKKVDWLNGDLS 376
             +  ++  +   + 
Sbjct: 398 SELATEIKPIPPTIE 412


>gi|290994831|ref|XP_002680035.1| ATP-dependent RNA helicase [Naegleria gruberi]
 gi|284093654|gb|EFC47291.1| ATP-dependent RNA helicase [Naegleria gruberi]
          Length = 629

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 125/384 (32%), Positives = 193/384 (50%), Gaps = 13/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F +  L PK++  +  AG+ KPTP+Q  +IP+VL   D+   AQTG+GKT +F+ P+   
Sbjct: 154 FKEANLPPKLMQNIERAGFGKPTPVQKHSIPIVLAGRDLLSCAQTGSGKTCAFLFPIISN 213

Query: 60  ----------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                     +   E     V  P  LI+ PTREL+ Q+ D   K+  +      +  GG
Sbjct: 214 LMTQPGYETVMPHPELMDTLVTCPSVLIMAPTRELSTQIYDESRKFTYHTGRRTVVAYGG 273

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
              + Q K+LERG D+L+ TPGR++D  +RG + ++N++ LV+DEADRMLDMGF P I+ 
Sbjct: 274 AAIQYQLKQLERGCDILVATPGRLVDLIDRGSISLHNVQYLVLDEADRMLDMGFEPQIRY 333

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I             +   +    K  +   ++     +N       +     +  +    
Sbjct: 334 IVEKTGMPAPGQRITLMFSATFPKNIQTLARDFLHNNLNLTVGRVGSTHENILQKFVYCK 393

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
                   L          ++F   KK    L + L K GF   +IHG+  QR R   L 
Sbjct: 394 DDEKRDLMLEAIASVETLTLVFVKTKKEASILEYFLMKNGFKSSSIHGDKTQRERETALE 453

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           NF+ G   ++VA+D+A+RGLDI DVGHV N+D+P   E+Y+HRIGRTGRAG  G + +  
Sbjct: 454 NFRRGITPILVATDVASRGLDINDVGHVINYDLPENIEDYVHRIGRTGRAGNTGISTSFF 513

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNG 373
             ++ +  D +  ++E+    +  
Sbjct: 514 TDKNNQIADDLITVLEEAKQEVPP 537


>gi|282158103|ref|NP_001164095.1| ATP-dependent RNA helicase p62 [Tribolium castaneum]
          Length = 549

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 125/382 (32%), Positives = 207/382 (54%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F +      V   +   GY  PT IQ +  P+ +   D+ GIAQTG+GKT +++LP   
Sbjct: 114 NFEEACFPDYVQHEIQKQGYDTPTAIQAQGWPIAMSGKDLVGIAQTGSGKTLAYILPAIV 173

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +   AR   P  L+L PTRELA Q+      +G +  +    + GG P   Q + L
Sbjct: 174 HINNQPSIARGDGPIALVLAPTRELAQQIQQVAHDFGSSSYVRNTCIFGGAPKGPQARDL 233

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG ++ I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 234 ERGVEICIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 293

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL---Q 236
           TL++SAT   E++K++++FL+N  +I + +   +A       V    ++ K+  L    Q
Sbjct: 294 TLMWSATWPKEVRKLAQDFLRNYVQINIGSLQLSANHNILQIVDVCQEHEKETKLNNLLQ 353

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++  + +     IIF   KK V ++  ++ + G+    +HG+  Q+ R  +L  F+ G  
Sbjct: 354 EIGNNGEPGAKIIIFVETKKKVESITRTIRRYGWPAVCMHGDKSQQERDFVLREFRNGKS 413

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARGLD+  + +V N+D PN +E+YIHRIGRTGR+   G ++      + + 
Sbjct: 414 SILIATDVAARGLDVEGIKYVINYDYPNSSEDYIHRIGRTGRSDTTGTSYAFFTPSNFRQ 473

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
              +  ++++    +N  LS +
Sbjct: 474 AKDLVSVLKEANQAINPRLSEM 495


>gi|85082449|ref|XP_956915.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A]
 gi|74662479|sp|Q7RY59|RRP3_NEUCR RecName: Full=ATP-dependent rRNA helicase rrp-3
 gi|28917996|gb|EAA27679.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A]
          Length = 515

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 131/414 (31%), Positives = 211/414 (50%), Gaps = 9/414 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +  A    GY  PTPIQ ++IPL LQ  D+ GIA+TG+GKTA+F LP+L 
Sbjct: 91  TFKDLGIVDALCEACERLGYKNPTPIQEQSIPLALQNRDIIGIAETGSGKTAAFALPILQ 150

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            L     +      L+L PTRELAAQ+A  FE  G   +L  AL++GG+    Q     +
Sbjct: 151 AL---LDKPAPLFALVLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMVTQAIALGK 207

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      +          + +++ LV+DEADR+LDM F P ++ I   +P  R+T
Sbjct: 208 KPHVIVATPGRLLDHLEKTKGFSLRSMQYLVMDEADRLLDMDFGPILEKILKFLPRERRT 267

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L++P ++ V++      +             K        L 
Sbjct: 268 FLFSATMSSKVESLQRASLRDPLKVSVSSNKYATVSTLKSNYVFIPHMHK--DTYLVYLC 325

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   +  IIF         +   L   G     +HG + Q +R+  L+ F+ G+ +++V
Sbjct: 326 NEFAGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSREILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP+V  V N D+P  ++ Y+HR+GRT RAG+ G A ++V + D++    I
Sbjct: 386 ATDVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYDLEIWLRI 445

Query: 361 EKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           E  +  K+D    +   +    P +E+      N  +       K  G  +RK+
Sbjct: 446 EAALGHKLDEYPLEKDEVMVFKPRVEEAQRHARNEMKSLMENQGKHGGLLKRKR 499


>gi|313148046|ref|ZP_07810239.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313136813|gb|EFR54173.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
          Length = 647

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 133/385 (34%), Positives = 225/385 (58%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++
Sbjct: 14  TFEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI 73

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             +     + R+P++L+L PTREL  Q+A +   Y K  +    L + G    ++Q + L
Sbjct: 74  QKINV---KNRIPQSLVLCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSL 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD   R  + +  +  +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 131 KRGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTESINAILADVPQERN 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+N+L + K I +   +   E+  +     Y  ++K      + +
Sbjct: 191 TLLFSATMSPEIARISKNYLHDAKEITIGRKN---ESTSNVKHVVYTVHAKDKYAALKRI 247

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GI+FC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +Q++
Sbjct: 248 VDYYPQIYGIVFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNLQIL 307

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 308 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRE 367

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE++I KK  ++ G++ +     EK
Sbjct: 368 IERIIGKK--FIAGEMPTGKQICEK 390


>gi|255010251|ref|ZP_05282377.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
          Length = 636

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 133/385 (34%), Positives = 225/385 (58%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++
Sbjct: 3   TFEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             +     + R+P++L+L PTREL  Q+A +   Y K  +    L + G    ++Q + L
Sbjct: 63  QKINV---KNRIPQSLVLCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD   R  + +  +  +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KRGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTESINAILADVPQERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+N+L + K I +   +   E+  +     Y  ++K      + +
Sbjct: 180 TLLFSATMSPEIARISKNYLHDAKEITIGRKN---ESTSNVKHVVYTVHAKDKYAALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GI+FC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +Q++
Sbjct: 237 VDYYPQIYGIVFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNLQIL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRE 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE++I KK  ++ G++ +     EK
Sbjct: 357 IERIIGKK--FIAGEMPTGKQICEK 379


>gi|46447193|ref|YP_008558.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400834|emb|CAF24283.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 515

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 141/390 (36%), Positives = 210/390 (53%), Gaps = 13/390 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL   ++ A+ +AG+   +PIQ + IP+VL  HDV   A TGTGKTA+F LP L +
Sbjct: 13  FEQFGLKAPILQALQEAGFKIASPIQKQAIPVVLAGHDVVAQAHTGTGKTAAFGLPALHL 72

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +          + L+L PTRELA+QV+D   + G++  +  A + GG  F  Q + L+RG
Sbjct: 73  IHDNPGS----QLLVLTPTRELASQVSDELFRLGRHLGIRTATICGGKSFRPQIEALQRG 128

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+ D      L      I+V+DEAD MLDMGF+  IQ I + +P  RQTLL
Sbjct: 129 VQVIVATPGRLQDLLESDSLPDFRPAIVVLDEADEMLDMGFLEAIQRIFTFLPAKRQTLL 188

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +QK++   L+ P  I V    +T + I+  +            L        
Sbjct: 189 FSATMPSAIQKLAHQILKKPIFISVTQKETTNKDIKQVYYVIREDERDDAILRLL---DS 245

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     IIFC  KK+V  L  +L   G+    +HG+++Q  R +++ +F+   I+++VA+
Sbjct: 246 EEPAKSIIFCRTKKDVDRLSTTLVANGYHARGLHGDMEQPQREEVIRHFRSEQIRVLVAT 305

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGL + DV HVFN+ +P    +Y+HRIGRTGRAG  G A T V   + +     EK
Sbjct: 306 DVAARGLSVSDVSHVFNYHLPFDPASYVHRIGRTGRAGNKGVASTFVTLREWREFQRYEK 365

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           +    ++        + P LE +   +   
Sbjct: 366 VTGAPINR------EIIPTLEDVKKLKRQK 389


>gi|302804021|ref|XP_002983763.1| hypothetical protein SELMODRAFT_268770 [Selaginella moellendorffii]
 gi|300148600|gb|EFJ15259.1| hypothetical protein SELMODRAFT_268770 [Selaginella moellendorffii]
          Length = 418

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 132/417 (31%), Positives = 217/417 (52%), Gaps = 11/417 (2%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
            +LG++  +V A  + G   PTP+Q   +P +L+  DV G+AQTG+GKTA+F LP+L  L
Sbjct: 5   KELGVAEWLVGACKELGMRHPTPVQRACVPQILKGKDVLGMAQTGSGKTAAFALPILQRL 64

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            +    +     L++ PTRELA Q++D F+  G   +L  A+++GG+    Q + L    
Sbjct: 65  GENPYGIFA---LVMTPTRELAFQISDQFKALGAGVHLRCAVVVGGMDMTTQAQILTERP 121

Query: 124 DVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            V+I TPGRI  H           +  + LV+DEAD +LD GF   +Q I   +   RQT
Sbjct: 122 HVVIATPGRIKAHLGSDPDIAAAFSKTKFLVLDEADLLLDRGFQDELQTIFDGISKQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATMT +LQ + + F       +      T E+++  ++    +             
Sbjct: 182 LLFSATMTGDLQALRDLFGHRAFFYQAYEGLKTVESLDQRYIFMPGKVKNVYLTYLLENL 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +++ IIF ++ +    L   L++ G S  A+H    Q  R+  L+ FK G   +++
Sbjct: 242 ELGDIRSVIIFVSRCRTCHLLSLILDELGISAVALHSVKTQPQRLAALNQFKSGQATILI 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V N+D+P   ++Y+HR+GRT RAGR G+A +LV + D++ +  +
Sbjct: 302 ATDVASRGLDIPTVDLVVNYDIPRFTKDYVHRVGRTARAGRGGRAISLVTELDVELVHEV 361

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           E  + KK++      S +   + K+       A++   +  + +G   +       K
Sbjct: 362 ESFLGKKLEEYEVSESDVLKNITKV-----YKAKRVAIMKMEDSGIQEKMDARKKMK 413


>gi|258593189|emb|CBE69527.1| ATP-dependent RNA helicase [NC10 bacterium 'Dutch sediment']
          Length = 407

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 134/403 (33%), Positives = 202/403 (50%), Gaps = 5/403 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L   +   +  AG+ + TPIQ +T+PL L   D+ G AQTG+GKTA+F++P+  
Sbjct: 3   TFDTFSLPASIARGIEAAGFTQCTPIQAETLPLALAGKDIAGQAQTGSGKTAAFLIPLFV 62

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L   R       PR LIL PTRELA Q+  + E  G    LT     GG+ ++ Q   L
Sbjct: 63  RLLTSRHPTLSGAPRALILAPTRELAVQILWDAELLGGFTGLTRLAAYGGVDYQKQRDAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++  D+LI TPGR++D+F +G   ++ +E+LV+DEADRM DMGFI  ++ +   +P   +
Sbjct: 123 QQNVDILIGTPGRLIDYFKQGVYELSQVEVLVVDEADRMFDMGFIKDLRFLLRRLPPYHK 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              F  + T  L               +    S  +              K+        
Sbjct: 183 RQSFLFSAT--LSFREMELSYEFMNNPIKVAISPEQVTVDKVEHLLFHVEKQEKFRLLRW 240

Query: 240 QSQDTMKNGIIFCNQKKN-VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             Q      I+  +  +     L   L + GF    I G+IDQR R++I++ FK GT+ +
Sbjct: 241 LLQREAWQRILIFSNTRQGAERLTDKLVRCGFRAGLISGSIDQRKRLQIITKFKAGTLPI 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RGL +  V HV N+D+P   E+Y+HRIGRT RAG  GKA +L  +E +  +D
Sbjct: 301 LVATDVASRGLHVEAVSHVINYDLPQDPEDYVHRIGRTARAGAAGKAISLADEEYVLSLD 360

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           AIE+ I  K+     D S+  P +        N  R+     +
Sbjct: 361 AIERYIGFKIPVQWPDESAFAPGVAAGAAVAANSVRQGRKSAE 403


>gi|94263991|ref|ZP_01287792.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93455584|gb|EAT05769.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 509

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 153/450 (34%), Positives = 242/450 (53%), Gaps = 13/450 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P V  AV + GY  PTPIQ   I  +L   D+ G AQTGTGKTA+F LP+L+ 
Sbjct: 9   FSQLPLAPAVSQAVAEIGYETPTPIQAAAIGPLLAGRDLLGQAQTGTGKTAAFALPLLSR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLER 121
           L+  R   + P+ L+L PTRELA QVAD  + Y ++      L + G      Q + L+R
Sbjct: 69  LDTSR---KYPQLLVLAPTRELALQVADEIQAYSRHLPGFQVLPLYGGQNMAQQLRALQR 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G   ++ TPGRI DH  RG L ++ +  +VIDEAD ML MGF+  ++ I +  P  RQ  
Sbjct: 126 GVQAVVGTPGRIQDHLRRGTLKLDRLTAVVIDEADEMLKMGFVDEVEKILAQTPPQRQVA 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT E+ +++   L++P+ I + T ++T ETI   +                 +  
Sbjct: 186 LFSATMTQEIMRIARRHLKDPEEIRLKTRTTTVETISQHYWLVQGLQK---LDALTRILE 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + ++  +IF   K   V L   L  +GF+  A++G++ Q  R K +   K+GT+ ++VA
Sbjct: 243 AEAVEAMLIFVRTKVATVELAEKLAARGFASAALNGDMTQGLREKTVEQLKDGTLDIVVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A   VA  +++ + AIE
Sbjct: 303 TDVAARGLDVQRISHVVNYDIPYDTESYVHRIGRTGRAGRQGQAIIFVAPREMRMLHAIE 362

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           K   +++  L        P   +++  + +  ++      +  G +  ++  +   +   
Sbjct: 363 KATRQQISRLQ------LPSRREVNQRRIDQFKEKIIAASRQPGLEFFEELIAQATAEAE 416

Query: 422 LKESEKISKLQQDIQENDADSLGFRGNMPA 451
           +   +  + L   +Q+         G  PA
Sbjct: 417 IDSQQLAAGLAYLLQQARPLLPEEGGPPPA 446


>gi|281355042|ref|ZP_06241536.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281317922|gb|EFB01942.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 627

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 133/374 (35%), Positives = 214/374 (57%), Gaps = 9/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
           +F  LG+S +V+ A+   G+  P+PIQ  TIP +L+   D+ G AQTGTGKTA+F +P++
Sbjct: 6   NFRKLGVSEEVLEALRAKGFEAPSPIQALTIPKLLEGAVDLIGQAQTGTGKTAAFGIPVI 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + E G  +   P+ LIL PTREL+ Q+A+          L +A   GG   E Q ++L 
Sbjct: 66  ELCEGGGKK---PQALILSPTRELSIQIAEELNSLKGKRKLRIAPFYGGQMIEIQLQRLR 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV+I TPGRI+D   RGKL  + ++  V+DEAD MLDMGF+  I+ I       ++ 
Sbjct: 123 DGIDVVIGTPGRIMDLMERGKLDFSELKFAVLDEADEMLDMGFVEDIEKILGATNSDKRM 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSATM  E+ K++E F+++ + +   +     E  E      +    +        + 
Sbjct: 183 LMFSATMPPEILKIAERFMRSYETVRAESAQLNTELTEQ---IYFEVRREDKFEALSRII 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     ++FC  + +V  L   L+ +G  V A+HG+I Q  R ++++ FK+   ++++
Sbjct: 240 DVEQDLYALVFCRTRNDVDELVEKLKLRGHRVEALHGDIAQMQRTRVINQFKDKKFKILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV N+ +P   E Y+HRIGRTGRAG++G A T V   + + +  I
Sbjct: 300 ATDVAARGIDVNDLTHVINYSMPQGTETYVHRIGRTGRAGKNGTAITFVTPAEYRKLTMI 359

Query: 361 EK--LIEKKVDWLN 372
           ++    E + + L 
Sbjct: 360 QREAHTEIRREELP 373


>gi|254584256|ref|XP_002497696.1| ZYRO0F11440p [Zygosaccharomyces rouxii]
 gi|238940589|emb|CAR28763.1| ZYRO0F11440p [Zygosaccharomyces rouxii]
          Length = 523

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 116/376 (30%), Positives = 185/376 (49%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L  +++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTA+FV+P L 
Sbjct: 31  TFEDFFLKRELLMGIFEAGFEKPSPIQEESIPVALAGRDILARAKNGTGKTAAFVIPTLE 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    ++   + LI+ PTRELA Q +      GK+  ++  +  GG        +L  
Sbjct: 91  KVKP---KINKIQALIMVPTRELALQTSQVVRTLGKHCGVSCMVTTGGTNLRDDILRLNE 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL+ TPGR+LD  +R    ++   + V+DEAD+ML   F   I+ I   +P   Q+L
Sbjct: 148 TVHVLVGTPGRVLDLASRKVADLSECSLFVMDEADKMLSRDFKTIIEQILIFLPPQHQSL 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++    F+                T++           ++       L S
Sbjct: 208 LFSATFPITVKE----FMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFS 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   +   G+S    H  + Q+ R K+   F++G ++ +V 
Sbjct: 264 KLQVNQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMRQQERNKVFHEFRQGKVRTLVC 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+   D  ++  IE
Sbjct: 324 SDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIE 383

Query: 362 KLIEKKVDWLNGDLSS 377
           + +  ++  +   +  
Sbjct: 384 QELGTEIAAIPATIDK 399


>gi|296813451|ref|XP_002847063.1| ATP-dependent RNA helicase DBP2 [Arthroderma otae CBS 113480]
 gi|238842319|gb|EEQ31981.1| ATP-dependent RNA helicase DBP2 [Arthroderma otae CBS 113480]
          Length = 417

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 129/369 (34%), Positives = 212/369 (57%), Gaps = 3/369 (0%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR--ARV 70
           +  V   G+VKPTPIQ +  P+ L   DV GIA+TG+GKT ++ LP +  +      A  
Sbjct: 1   MSEVKAQGFVKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPG 60

Query: 71  RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130
             P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L RG +V I TP
Sbjct: 61  DGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQIRDLTRGVEVCIATP 120

Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190
           GR++D    G+  +  +  LV+DEADRMLDMGF P I+ I   +   RQT ++SAT   +
Sbjct: 121 GRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTCMWSATWPKD 180

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGII 250
           +++++ +FLQ+  ++ + +   +A       V   +++ K+  +++ L +  +  K+ ++
Sbjct: 181 VRQLANDFLQDYIQVYIGSQDLSANHRITQIVEVVSEFEKRDRMIKHLERIMEDKKSKVL 240

Query: 251 FCNQKKNV-VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
                K V  ++   L + G+   +IHG+  Q  R  +L+ FK G   +MVA+D+A+RG+
Sbjct: 241 IFTGTKRVADDITRFLRQDGWPALSIHGDKQQSERDWVLNEFKSGKSPIMVATDVASRGI 300

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           D+ D+ HV N D PN +E+Y+HRIGRTGRAG +G A T+   E+ K    + K++ +   
Sbjct: 301 DVRDITHVLNHDYPNNSEDYVHRIGRTGRAGANGTAITMFTTENAKQARDLVKILTESKQ 360

Query: 370 WLNGDLSSL 378
            ++  L+ +
Sbjct: 361 QIDPRLAEM 369


>gi|225075877|ref|ZP_03719076.1| hypothetical protein NEIFLAOT_00900 [Neisseria flavescens
           NRL30031/H210]
 gi|224952823|gb|EEG34032.1| hypothetical protein NEIFLAOT_00900 [Neisseria flavescens
           NRL30031/H210]
          Length = 463

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 151/442 (34%), Positives = 225/442 (50%), Gaps = 14/442 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QRLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    ++P+ IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRT      G A T     +   + 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRT------GIAITFAEVNEYVKVH 353

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IEK I +K+  L  +      P  K   A      K     +KS G    KK       
Sbjct: 354 KIEKYINRKLPELTIE---GMEPTRKRKSAGGKPKGKGGWGDRKSGGRRGDKKPGKEGFG 410

Query: 419 HIPLKESEKISKLQQDIQENDA 440
                E  K    ++D  + D 
Sbjct: 411 GNSRGEGHKKDGFKKDGFKKDG 432


>gi|45185883|ref|NP_983599.1| ACR197Wp [Ashbya gossypii ATCC 10895]
 gi|74694822|sp|Q75BS4|DHH1_ASHGO RecName: Full=ATP-dependent RNA helicase DHH1
 gi|44981673|gb|AAS51423.1| ACR197Wp [Ashbya gossypii ATCC 10895]
          Length = 484

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 118/376 (31%), Positives = 187/376 (49%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L  +++  + +AG+ +P+PIQ + IP+ L R D+   A+ GTGKTA+FV+P L 
Sbjct: 30  TFEDFYLRRELLMGIFEAGFERPSPIQEEAIPIALARRDILARAKNGTGKTAAFVIPTLE 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I++    +V   + LI+ PTRELA Q +      GK+  ++  +  GG        +L  
Sbjct: 90  IVKP---KVNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIMRLNE 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL+ TPGR+LD  +R    ++   + V+DEAD+ML   F   ++ I S +P   Q+L
Sbjct: 147 PVHVLVGTPGRVLDLASRKVADLSECSLFVMDEADKMLSRDFKSLVEQILSFLPQNHQSL 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++    F+                T++           ++       L S
Sbjct: 207 LFSATFPLTVKE----FMVKHLNKPYEINLMDELTLKGITQYYAFVEERQKLHCLNTLFS 262

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   +   G+S    H  + Q+ R K+   F++G ++ +V 
Sbjct: 263 KLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVC 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+   D  ++  IE
Sbjct: 323 SDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIE 382

Query: 362 KLIEKKVDWLNGDLSS 377
           + +  ++  +   +  
Sbjct: 383 QELGTEIAAIPAQIDK 398


>gi|322495292|emb|CBZ30595.1| putative ATP-dependent DEAD-box RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 405

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 194/377 (51%), Gaps = 8/377 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +  L  ++   + + G+ KP+P+Q + IP+ LQ  DV   A+ GTGKTASFV+P+L
Sbjct: 30  VNFEEYALRRELQMGIFEKGFEKPSPVQEEAIPVALQGKDVLARAKNGTGKTASFVIPVL 89

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKL 119
             ++    R    + L++ PTRELA Q A   ++ GK+     V +  GG        +L
Sbjct: 90  EKVDT---RESYVQALLMVPTRELALQTAQVTKELGKHIPGLEVMVTTGGTTLRDDILRL 146

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LD  ++  + +++  ILV+DEAD++L   F+  I ++ + +P   Q
Sbjct: 147 TSKVHILVATPGRVLDLASKKAVDLSHCHILVLDEADKLLSQEFMEIIDDLYTYLPSQLQ 206

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           ++LFSAT    ++     F +               T++           ++       L
Sbjct: 207 SMLFSATFPVTVKT----FAERHLHNPYEINLMDELTLKGVTQYYAFVEERQKIHCLNTL 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++  +   IIFCN    V  L   + + G+S   IH  + Q+ R ++  +F+EG  + +
Sbjct: 263 FNKLQINQSIIFCNSVNRVELLAKKITQLGYSCYYIHARMQQQHRNRVFHDFREGHCRNL 322

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A   V  +D  ++  
Sbjct: 323 VCSDLITRGIDIQAVNVVINFDFPKYAETYLHRIGRSGRFGHLGVAINFVTYDDRYNVYR 382

Query: 360 IEKLIEKKVDWLNGDLS 376
           IE+ ++ ++  +  D+ 
Sbjct: 383 IEQELDTEIKPIPADID 399


>gi|269795126|ref|YP_003314581.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269097311|gb|ACZ21747.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542]
          Length = 614

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 143/394 (36%), Positives = 221/394 (56%), Gaps = 15/394 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL  +++ AVLD G+  P+ IQ K IP +L  +D+ G+AQTGTGKTA+F LPML
Sbjct: 30  ITFADLGLPAELLSAVLDLGFTVPSTIQEKAIPALLAGNDITGVAQTGTGKTAAFGLPML 89

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++    R +    L+L PTRELA QVA+  E + K+      + +  G P+  Q + L
Sbjct: 90  AAVDPELRRTQ---ALVLAPTRELAMQVAEAIETFAKHLPGIEVVPVYGGSPYPPQARAL 146

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR++DH  RG L + +I  LV+DEAD ML MGF   ++ I    P  RQ
Sbjct: 147 SRGAQIVVGTPGRVIDHLERGTLKLGDIRFLVLDEADEMLRMGFAEDVEKIFGAAPTERQ 206

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  ++++V+++ ++ P  I V+  SST  ++   +        +        +
Sbjct: 207 VALFSATMPPQIRRVAQHHMRQPVEIAVSRQSSTVTSVTQQYAVVPF---RHKVGSLTRV 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       I+FC  +     +  +L ++G S   I G++ Q+ R KI+   + G + ++
Sbjct: 264 LATSDADAAIVFCRTRGAAEEVGSALIERGISAATISGDVAQKDREKIVERLRAGALDVL 323

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +G V NFD+P   E Y+HRIGRTGRAGR G A + V   +   +  
Sbjct: 324 VATDVAARGLDVDRIGLVVNFDIPGEPEAYVHRIGRTGRAGRTGVALSFVTPNERGRLKQ 383

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           IE+ I +++  +              D++ H  A
Sbjct: 384 IERTIRQQLVEIEIP--------SPADVSAHKVA 409


>gi|255935375|ref|XP_002558714.1| Pc13g02750 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583334|emb|CAP91344.1| Pc13g02750 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 493

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 136/426 (31%), Positives = 222/426 (52%), Gaps = 6/426 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL   +  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTASFVLP+L 
Sbjct: 72  TFKELGLIDSLCEACDKMGYKAPTPIQSESIPLALQGRDIIGLAETGSGKTASFVLPILQ 131

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    L+L PTRELA Q++   E  G   N+    L+GG+    Q+  L +
Sbjct: 132 AL---MEKPQSFFGLVLAPTRELAYQISLACESLGATINVRSTTLVGGMDMVPQSIALGK 188

Query: 122 GADVLICTPGRI-LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+     N     + +++ LV+DEADR+LDM F P +  I  ++P  R+T
Sbjct: 189 KPHIIVATPGRLLDHLENTKGFSLRSLKFLVMDEADRLLDMDFGPILDKILKVLPRERRT 248

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT++ +++ +    L NP R+ +++      T+E        +  K   +    L 
Sbjct: 249 FLFSATLSSKVESLQRASLSNPARVSISSSKY--ATVETLQQTYLLRPYKHKDIYLVYLL 306

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   ++ IIF         +   L   GF    +HG + Q +R+  L  F+  + +++V
Sbjct: 307 HEFIGQSVIIFMRTVHETQRVAFLLRGLGFGAIPLHGQMSQSARLGALGKFRSKSREILV 366

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V NFD+P  ++ YIHR+GRT RAG+ G A + V + D++    I
Sbjct: 367 ATDVAARGLDIPSVDCVLNFDLPTDSKTYIHRVGRTARAGKSGTAISFVTQYDVEIWQRI 426

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  + K++              E++  +Q +  +      +K     + K ++  ++S  
Sbjct: 427 EAAMGKELAEYPAPKDEAMVFAEQVSASQRDAIQAMKHYDEKKGAKGKGKFSFKGKRSRD 486

Query: 421 PLKESE 426
            + + E
Sbjct: 487 AMDQEE 492


>gi|260912843|ref|ZP_05919329.1| ATP-dependent RNA helicase RhlB [Pasteurella dagmatis ATCC 43325]
 gi|260633221|gb|EEX51386.1| ATP-dependent RNA helicase RhlB [Pasteurella dagmatis ATCC 43325]
          Length = 449

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 133/417 (31%), Positives = 210/417 (50%), Gaps = 5/417 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L+ KV+ A+   G+   TPIQ  ++P+ L   D+ G AQTGTGKT +F+    
Sbjct: 34  LRFSDLPLNSKVLSALERKGFEYCTPIQALSLPISLAGKDIAGQAQTGTGKTMAFLTATF 93

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 +       PR LIL PTRELA Q+ ++ E   K  NL   L  GG  +E Q K 
Sbjct: 94  HHLLTHQSEKNTSQPRALILAPTRELAVQINNDAELLSKATNLKTGLAYGGDGYEKQLKT 153

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +E+G D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P   
Sbjct: 154 IEKGVDILIGTTGRVIDYVKQGIICLDQIQVVVLDEADRMFDLGFIKDIRYLLRKCPAPE 213

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             L    + T   +     F       E        +T        +   ++    L   
Sbjct: 214 ARLTMLFSATLSYKVRELAFEDMND-PEYVEIEPLQKTGHRIKEELFYPSNQDKMALLLT 272

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  ++  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G + +
Sbjct: 273 LLEEEWPERCIVFANTKHRCEEIWGYLSADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDI 332

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ 
Sbjct: 333 LVATDVAARGLHISDVTHVFNYDLPDDCEDYVHRIGRTGRAGESGVSISFACEEYAMNLP 392

Query: 359 AIEKLIEKKVDWLNGDLSSL--NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           AIE  I   +     D  +L   P   ++  A H   R ++   +        K+++
Sbjct: 393 AIENYIAHSIPVSQYDAKALLELPKPHRLKRATHTAMRNHSKNDRTFANKRSVKRHF 449


>gi|297742547|emb|CBI34696.3| unnamed protein product [Vitis vinifera]
          Length = 438

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 111/375 (29%), Positives = 190/375 (50%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 65  EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 124

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++       + + +IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 125 KIDPDN---NVIQVVILVPTRELALQTSQVCKELGKHLKIEVMVTTGGTSLKDDIMRLYQ 181

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P ++ +   +P  RQ L
Sbjct: 182 PVHLLVGTPGRILDLSKKGICILKDCSVLVMDEADKLLSPEFQPSVEQLIRFLPQNRQIL 241

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++     F     +           T++           ++       L S
Sbjct: 242 MFSATFPVTVKD----FKDRYLKKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFS 297

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 298 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 357

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 358 TDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 417

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 418 QELGAEIKQIPPHID 432


>gi|256819312|ref|YP_003140591.1| DEAD/DEAH box helicase domain-containing protein [Capnocytophaga
           ochracea DSM 7271]
 gi|256580895|gb|ACU92030.1| DEAD/DEAH box helicase domain protein [Capnocytophaga ochracea DSM
           7271]
          Length = 584

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 130/372 (34%), Positives = 211/372 (56%), Gaps = 9/372 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLP 58
           M+ F  LGL+  ++ A+ D G+  P+ IQ K IP +L    D+  +AQTGTGKTA+F  P
Sbjct: 1   MNLFEQLGLNEPILKAISDMGFETPSEIQQKAIPTLLANGADMVALAQTGTGKTAAFGFP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNK 117
           +L +++      R+ + LIL PTREL  Q+A     Y K       + + G    E Q +
Sbjct: 61  LLQLIDT---DSRVTQGLILSPTRELCLQIASELRNYAKYLPKVNVVAVYGGASIEEQAR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++GA +++ TPGR+ D   R  + +++I   V+DEAD ML+MGF   I  I S  P  
Sbjct: 118 SLKKGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILSHTPQE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           + T LFSATM +E+ K++  F++ P  I V T +    T++H     Y    +      +
Sbjct: 178 KSTWLFSATMPNEVAKIARKFMRKPIEITVGTRNQATNTVQH---EYYIVSGRHRYQALK 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   +     ++FC  K++   +   L + G++  A+HG++ Q  R  ++ +F+   IQ
Sbjct: 235 RLADANPDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ D+ HV ++ +P+  E Y HR GRTGRAG+ G +  ++ K ++K I
Sbjct: 295 MLVATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVILPKSEVKKI 354

Query: 358 DAIEKLIEKKVD 369
             IEK+I +  +
Sbjct: 355 KTIEKMIGQPFE 366


>gi|225426363|ref|XP_002271357.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 480

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 111/375 (29%), Positives = 190/375 (50%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 107 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 166

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++       + + +IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 167 KIDPDN---NVIQVVILVPTRELALQTSQVCKELGKHLKIEVMVTTGGTSLKDDIMRLYQ 223

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P ++ +   +P  RQ L
Sbjct: 224 PVHLLVGTPGRILDLSKKGICILKDCSVLVMDEADKLLSPEFQPSVEQLIRFLPQNRQIL 283

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++     F     +           T++           ++       L S
Sbjct: 284 MFSATFPVTVKD----FKDRYLKKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFS 339

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 340 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 399

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 400 TDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 459

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 460 QELGAEIKQIPPHID 474


>gi|157804046|ref|YP_001492595.1| ATP-dependent RNA helicase RhlE [Rickettsia canadensis str. McKiel]
 gi|157785309|gb|ABV73810.1| ATP-dependent RNA helicase RhlE [Rickettsia canadensis str. McKiel]
          Length = 410

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 140/422 (33%), Positives = 228/422 (54%), Gaps = 15/422 (3%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
            +  LS +++ A+      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP++   
Sbjct: 2   KNFNLSEELIIALETMNITEPTEIQKQSIPIAMIGSDILASSQTGSGKTLAYLLPVIDSF 61

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            K +         IL PTRELA Q+     K  + Y +  A+LIGG P   Q  +L++  
Sbjct: 62  IKNKTTAL-----ILVPTRELATQIYSTLNKVTRYYKINSAVLIGGEPMPKQFMQLKKNP 116

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG    ++ I   +P  RQ L+F
Sbjct: 117 KVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQFLMF 176

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM   +  +S+ +L NP RI V   +  A  I+          + K    +   Q  +
Sbjct: 177 SATMPKHIITLSQKYLNNPVRITVGANNKAAAEIKQ----ESIHIADKEKFSELTKQLDN 232

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
              + IIF   +++   L + L+ +     AIHG++ QR R +++ +F++   ++MVA+D
Sbjct: 233 REGSVIIFVKTRRSADQLANMLKYENHKAEAIHGDLSQRQRERVILSFRKSNHRIMVATD 292

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ ED+    AI++L
Sbjct: 293 VAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPEDVIRWRAIDRL 352

Query: 364 IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLK 423
           + K      G+ +  +      +  + + + + +   +K   FD  +K      S+   +
Sbjct: 353 VNK------GESTPRSEFRNGKNNRKRSFSTRADSDSKKFNSFDNNRKKTFDGNSYGNKR 406

Query: 424 ES 425
           + 
Sbjct: 407 KK 408


>gi|297834230|ref|XP_002884997.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330837|gb|EFH61256.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 412

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 195/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F      
Sbjct: 40  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC---SG 96

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L++    +   + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 97  VLQQLDFSLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 156

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 157 GVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 216

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 217 VFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDL--YE 274

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 275 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 334

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V  +D + +  I+
Sbjct: 335 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTHDDERMLFDIQ 394

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     V+ L  +++ L
Sbjct: 395 KFYNVVVEELPSNVADL 411


>gi|242012227|ref|XP_002426835.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212511048|gb|EEB14097.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 678

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 125/381 (32%), Positives = 204/381 (53%), Gaps = 3/381 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +      ++  +   G+  PTPIQ +  P+ L   D+ GIA+TG+GKT +++LP +  
Sbjct: 129 FQEANFPDYIMNVIRKQGFTVPTPIQAQGWPIALSGKDIVGIAKTGSGKTIAYMLPAIVH 188

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +           P  LIL PTRELA Q+      +G+   +  + + GG P   Q + LE
Sbjct: 189 IHNQPPLELNDGPIALILAPTRELAQQIQSVANDFGEATRIRNSCIFGGAPKGPQFRDLE 248

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G +++I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 249 SGVEIVIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQV 308

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLL 239
           L++SAT   E++ ++E++L +  ++ + +   +A       V    ++ K+         
Sbjct: 309 LMWSATWPKEVRALAEDYLTDYIQLNIGSLQLSANHNILQIVDVCQEHEKENKLRQLLHE 368

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+ V N+   L K G+   +IHG+ +Q+ R  +L+ F+ G   ++
Sbjct: 369 IGSEKENKTIIFVETKRKVDNITQILRKDGWPALSIHGDKNQQERDHVLTQFRNGRASIL 428

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV  V  FD P+  E+YIHRIGRTGR+ + G A+      ++KH +A
Sbjct: 429 VATDVAARGLDVEDVKFVIIFDYPSSLEDYIHRIGRTGRSEQTGTAYAFFTPHNVKHANA 488

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           +  ++E+    +N  L  +  
Sbjct: 489 LINVLEEADQIVNPKLVEMAK 509


>gi|254236843|ref|ZP_04930166.1| hypothetical protein PACG_02863 [Pseudomonas aeruginosa C3719]
 gi|126168774|gb|EAZ54285.1| hypothetical protein PACG_02863 [Pseudomonas aeruginosa C3719]
          Length = 449

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 146/372 (39%), Positives = 221/372 (59%), Gaps = 5/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   G+  PTPIQ + IP  L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV  +   YG++  L  A+  GG+    Q  K
Sbjct: 61  QRLTLEGPQVAANSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD + +  +    ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D ++ ++   L++P  IEV+  ++ A+++    V    +   +       
Sbjct: 181 QTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKVELFCHLLQ 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  +  ++F   +K+V  L   L++QG +  +IHG+  Q +R++ L  FK G + L
Sbjct: 241 ANRW---RQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDL 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 MVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLA 357

Query: 359 AIEKLIEKKVDW 370
           AIE LI + +  
Sbjct: 358 AIETLIGQTLQR 369


>gi|322820318|gb|EFZ26975.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 406

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 195/377 (51%), Gaps = 8/377 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F + GL  ++   + + G+ +P+P+Q + IP+ LQ  DV   A+ GTGKTASFV+P+L
Sbjct: 31  VTFEEYGLRRELQMGIFEKGFERPSPVQEEAIPVALQGKDVLARAKNGTGKTASFVIPVL 90

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             ++    R    + L++ PTRELA Q A   ++ GK+   L V +  GG        +L
Sbjct: 91  EKVDT---REPHIQALLMVPTRELALQTAQVTKELGKHISGLEVMVTTGGTTLRDDILRL 147

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    VL+ TPGR++D  ++    ++   I+V+DEAD++L   F   I+++ + +P  RQ
Sbjct: 148 QNPVHVLVATPGRVVDLASKRTAKLDRCRIIVLDEADKLLSQEFTELIEDLYTYLPADRQ 207

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT    ++     F     R           T+            ++       L
Sbjct: 208 SLLFSATFPVTVKD----FADRYLRNPYEINLMEELTLRGVTQYYVFVEERQKIHCLNTL 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++  +   IIFCN    V  L   + + G+S   IH  + Q+ R ++  +F+EG  + +
Sbjct: 264 FNRLQINQSIIFCNSVNRVELLAKKITQLGYSCYYIHARMQQQHRNRVFHDFREGHCRNL 323

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A   V  +D  ++  
Sbjct: 324 VCSDLITRGIDIQAVNVVINFDFPKYAETYLHRIGRSGRFGHLGLAINFVTYDDRYNVYR 383

Query: 360 IEKLIEKKVDWLNGDLS 376
           IEK ++  ++ + G++ 
Sbjct: 384 IEKELDTVINAIPGEID 400


>gi|303277715|ref|XP_003058151.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460808|gb|EEH58102.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 413

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 194/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  SFDAMNLHENLLRGIYAYGFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCAGVLQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+         + L+L PTRELA Q+       G   N+     +GG       + L+ 
Sbjct: 101 QLDY---EKEECQALVLAPTRELAQQIEKVMRALGDYLNVKCHACVGGTSVREDQRILQS 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  ++I+I  +DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVYDMLRRRALKPDHIKIFSLDEADEMLSRGFKDQIYDIFQLLPSKLQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMTKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  + F+V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFANTRRKVDWLTDKMRARDFTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V K+D + +  ++
Sbjct: 336 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERLLQDVQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           +  +   + L  +++ L
Sbjct: 396 RFYQTVFEELPSNVADL 412


>gi|219113561|ref|XP_002186364.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583214|gb|ACI65834.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 370

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 119/374 (31%), Positives = 196/374 (52%), Gaps = 6/374 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           + L P ++  +   G+ KP+ IQ + I  +++  DV   +Q+GTGKTA F +  L +L++
Sbjct: 1   MQLKPDLLKGIYAYGFEKPSAIQQRAIRPIIRGRDVIAQSQSGTGKTAVFSVSSLQLLQE 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LERGAD 124
                   + LIL PTRELA Q     +  G   N+     IGG           + G  
Sbjct: 61  NSRE---CQVLILSPTRELAEQTQKVVQALGDFMNVHCHACIGGKSLGQDLNALEKGGIQ 117

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           ++  TPGR+ D   R  L  N+++ +++DEAD ML+ GF   I +I   +P + Q +L S
Sbjct: 118 IISGTPGRVFDLIRRNALSPNHLKAMILDEADEMLNRGFKEQIYDIYRFLPASTQVVLMS 177

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT+   +  ++  F+ +P RI V     T E I   F+    +  K   L         T
Sbjct: 178 ATLPASVLDMTRKFMNDPIRILVRRDELTLEGIRQFFINVEKEEWKFDTLCDL--YDTLT 235

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
           +   +IFCN K+ V  L   ++ + F+V A+HG++DQ +R  ++  F+ G+ ++++A+DL
Sbjct: 236 ITQAVIFCNTKQKVDWLAGKMKDKNFTVSAMHGDMDQGARDAVMEEFRSGSSRVLIATDL 295

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
             RG+D+  V  V  +D+P   E YIHRIGR+GR GR G A   V +ED + +  IE+  
Sbjct: 296 WGRGIDVQQVSLVICYDLPTNRELYIHRIGRSGRFGRKGIAINFVREEDTRLLRDIEQFY 355

Query: 365 EKKVDWLNGDLSSL 378
             +++ +  ++  L
Sbjct: 356 STQIEEMPTNVGDL 369


>gi|71650885|ref|XP_814131.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70879078|gb|EAN92280.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 406

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 195/377 (51%), Gaps = 8/377 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F + GL  ++   + + G+ +P+P+Q + IP+ LQ  DV   A+ GTGKTASFV+P+L
Sbjct: 31  VTFEEYGLRRELQMGIFEKGFERPSPVQEEAIPVALQGKDVLARAKNGTGKTASFVIPVL 90

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             ++    R    + L++ PTRELA Q A   ++ GK+   L V +  GG        +L
Sbjct: 91  EKVDT---REPHIQALLMVPTRELALQTAQVTKELGKHISGLEVMVTTGGTTLRDDILRL 147

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    VL+ TPGR++D  ++    ++   I+V+DEAD++L   F   I+++ + +P  RQ
Sbjct: 148 QNPVHVLVATPGRVVDLASKRTAKLDRCRIIVLDEADKLLSQEFTELIEDLYTYLPADRQ 207

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT    ++     F     R           T+            ++       L
Sbjct: 208 SLLFSATFPVTVKD----FADRYLRNPYEINLMEELTLRGVTQYYVFVEERQKIHCLNTL 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++  +   IIFCN    V  L   + + G+S   IH  + Q+ R ++  +F+EG  + +
Sbjct: 264 FNRLQINQSIIFCNSVNRVELLAKKITQLGYSCYYIHARMQQQHRNRVFHDFREGHCRNL 323

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A   V  +D  ++  
Sbjct: 324 VCSDLITRGIDIQAVNVVINFDFPKYAETYLHRIGRSGRFGHLGLAINFVTYDDRYNVYR 383

Query: 360 IEKLIEKKVDWLNGDLS 376
           IEK ++  ++ + G++ 
Sbjct: 384 IEKELDTVINAIPGEID 400


>gi|221059537|ref|XP_002260414.1| helicase [Plasmodium knowlesi strain H]
 gi|193810487|emb|CAQ41681.1| helicase, putative [Plasmodium knowlesi strain H]
          Length = 528

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 136/428 (31%), Positives = 211/428 (49%), Gaps = 19/428 (4%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
           + +G    V+ ++ +   V PTPIQI+  P+ L   D+ G A+TG+GKT +F+LP    +
Sbjct: 116 SKIGFPDYVLKSLKNNNIVTPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHI 175

Query: 64  --EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             +        P  L+L PTRELA Q+     K+     +      GG+P   Q   L++
Sbjct: 176 LAQPSLKYGDGPIVLVLAPTRELAEQIRQECVKFSVESKIRNTCAYGGVPKSGQIYALKQ 235

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +LI  PGR++D   +    +  +  LV+DEAD+MLDMGF   I+ I   +   RQTL
Sbjct: 236 GVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFEIQIRKIVEQIRPDRQTL 295

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT-YAQYSKKCALLQQLLQ 240
           ++SAT   E+Q ++ +  +           +               ++ K   L   L +
Sbjct: 296 MWSATWPKEVQSLARDLCKQQPIHVNVGSLTLTACRRIKQEIYLIEEHEKIANLKLLLQR 355

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   KKN   +  +L   G     IHG+  Q  R  +L++FK G   +++
Sbjct: 356 IFRDNDRIIVFVETKKNADFITKALRLDGVPALCIHGDKKQDERRWVLNDFKTGKSPILI 415

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI DV +V NFD PN+ E+Y+HRIGRTGRAG HG +FT +  +  +    +
Sbjct: 416 ATDVASRGLDIKDVKYVVNFDFPNQIEDYVHRIGRTGRAGAHGASFTFLTSDKYRLARDL 475

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
            K++ +           + P LEKI     ++   NNP      G+ R   N ++    I
Sbjct: 476 VKILRES-------EQPVPPQLEKI-----SYTSANNPRRNPYYGYGRSSHNVNN----I 519

Query: 421 PLKESEKI 428
           PLK S + 
Sbjct: 520 PLKGSNRY 527


>gi|315643920|ref|ZP_07897090.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315280295|gb|EFU43584.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 559

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 149/455 (32%), Positives = 240/455 (52%), Gaps = 16/455 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LG+  + V  + + G   PTP+Q ++IPL++   DV   A+TGTGKT +F+LP+L 
Sbjct: 3   NFQQLGIDEQRVRKLKEQGITVPTPVQQESIPLLIDGKDVIARARTGTGKTLAFMLPILQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEK--YGKNYNLTVALLIGGIPFEAQNKKL 119
            ++    +   P+ LI+ PTRELA Q+ +  +K   G+   + +  + GG   E Q +KL
Sbjct: 63  QIDP---KRAYPQALIIAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVEKQLRKL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G  ++I TPGR+LDH  RG L +  ++ LV+DEAD+ML MGF+  ++ +   +P+ RQ
Sbjct: 120 EGGRHLIIGTPGRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDDVEALIHALPYRRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   +++++ N++  P  I +   S          V      SK+     + +
Sbjct: 180 TMLFSATMPAGVKQLAGNYMNQPVDIVIKGASPIPLEQIQQVVVECTDRSKQD--ALRTM 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      IIFC  K+    L  +L   G+    +HG++ Q  R  ++  F++  +QL+
Sbjct: 238 IEQYNPFLAIIFCRTKRRASILNDALLAHGYQSDELHGDLSQAKREAVMKRFRDAKLQLL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  V HVFN+D+P+  E+YIHRIGRTGRAG +G A T  A +D+  +  
Sbjct: 298 VATDVAARGLDVEGVTHVFNYDMPHDVESYIHRIGRTGRAGGNGMAITFAAGKDLNDLQR 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP--------QKSTGFDRRKK 411
           IE+ I  ++  +  D S      E    +  +  R  N           ++  G  R  +
Sbjct: 358 IEEGISLRLKRVRYD-SGAGSLRESTGDSGRDAGRPRNTRSVSSLESDNERGQGRGRADR 416

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFR 446
              S +S      S +  + +   + +  D  G  
Sbjct: 417 GTGSGRSRGNHSGSARGEQSRGRGESSRRDERGTG 451


>gi|124505073|ref|XP_001351278.1| ATP-dependent RNA Helicase, putative [Plasmodium falciparum 3D7]
 gi|4493972|emb|CAB39031.1| ATP-dependent RNA Helicase, putative [Plasmodium falciparum 3D7]
 gi|117956282|gb|ABK58709.1| RNA helicase [Plasmodium falciparum]
 gi|117956284|gb|ABK58710.1| RNA helicase [Plasmodium falciparum]
          Length = 433

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 111/375 (29%), Positives = 184/375 (49%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + GY KP+PIQ ++IP+ L   ++   A+ GTGKTA+F +P+L 
Sbjct: 61  EFEDYFLKRELLMGIFEKGYEKPSPIQEESIPVALAGKNILARAKNGTGKTAAFAIPLLE 120

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                       + LIL PTRELA Q +   ++ GK+  +   +  GG        +L  
Sbjct: 121 KCNTH---KNFIQGLILVPTRELALQTSAMIKELGKHMKVQCMVTTGGTSLREDIMRLYN 177

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L  TPGRILD  N+    ++   I+V+DEAD++L   F P ++ +   +P  +Q L
Sbjct: 178 VVHILCGTPGRILDLANKDVANLSGCHIMVMDEADKLLSPEFQPIVEELMKFLPKEKQIL 237

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           ++SAT    +++    F                 T++           ++       L +
Sbjct: 238 MYSATFPVTVKE----FRAIYLSDAHEINLMDELTLKGITQYYAFVKERQKVHCLNTLFA 293

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 294 KLQINQAIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFRNGACRCLVS 353

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  L+  ED  ++  IE
Sbjct: 354 SDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINLITFEDRFNLYKIE 413

Query: 362 KLIEKKVDWLNGDLS 376
             +  ++  +  ++ 
Sbjct: 414 VELGTEIQPIPNEID 428


>gi|332704723|ref|ZP_08424811.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554872|gb|EGJ51916.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 517

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 157/454 (34%), Positives = 237/454 (52%), Gaps = 15/454 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    L  +++  +L AGY  PTPIQ + IP VL   DV G+AQTGTGKTA+FVLP+L
Sbjct: 1   MSFDSFSLDQRIMAGILAAGYTTPTPIQTRAIPAVLAGKDVMGLAQTGTGKTAAFVLPLL 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L    A  R P  + +L PTRELA Q+  +F   GK   +  A++IGG+    Q  K 
Sbjct: 61  QRLLNDNAPTRGPIRVLVLAPTRELAVQIHQSFFGLGKQTGIRSAVVIGGVGAMPQI-KA 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R A V +  PGR++D  N+G + ++ +  LV+DEADRMLDMGF+P ++ + + +P  RQ
Sbjct: 120 LRQATVAVACPGRLVDLMNQGAVDLSKVSALVLDEADRMLDMGFLPDVRKVMAKLPRQRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM  E++       ++  R  V    S          A Y     +   L + L
Sbjct: 180 NMLFSATMPAEIRS----LAESGLRDPVTVQVSNTAPAATVSHALYPVAGSRKQDLLEKL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +     + ++F   K     L   L  +GFSV ++ GN+ Q  R + +  F+ G  ++M
Sbjct: 236 LNDLGKNSALVFTRTKHRAKGLAQKLAGKGFSVTSLQGNLSQGRRQEAMDGFRNGKYRVM 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D   V  V NFD+P+ AE Y HRIGRTGRA R+G+A +LVA ED   +  
Sbjct: 296 VATDIAARGIDCERVSLVVNFDLPDTAEAYTHRIGRTGRAERNGEAVSLVAPEDESQVKF 355

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR-------RK 410
           IE+ +  +++   L+G   S     +     +   +R+  P P+K+            R 
Sbjct: 356 IERSLNLRIERKRLDGFSDSAARAPQYDSQPRTQQSRRPGPAPRKAIDSAATKSLLPVRS 415

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQENDADSLG 444
              ++ +   P     K +      +++ A + G
Sbjct: 416 GAGATSRGDNPTSARPKAAASAGKPRQHSASANG 449


>gi|302835930|ref|XP_002949526.1| hypothetical protein VOLCADRAFT_59325 [Volvox carteri f.
           nagariensis]
 gi|300265353|gb|EFJ49545.1| hypothetical protein VOLCADRAFT_59325 [Volvox carteri f.
           nagariensis]
          Length = 722

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 124/381 (32%), Positives = 207/381 (54%), Gaps = 7/381 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +   GLS +++  +   G+ +P PIQ + +P+++   D  GIA+TG+GKT +FVLPM+  
Sbjct: 75  WTQAGLSSRLLEVLKKRGFDRPLPIQAQALPIIMSGRDCIGIAKTGSGKTMAFVLPMMRH 134

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++      +   P +L++ PTREL AQ+A   + +GK   L    + GG     Q  +L+
Sbjct: 135 IKDQPPLQQGDGPVSLVIAPTRELVAQIAKEAKAFGKPLGLNALAVFGGSGVANQISELK 194

Query: 121 RGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RG +++ CTPGR++D     N     +  +  LV+DEADRM DMGF P I  I   +   
Sbjct: 195 RGVEIVACTPGRMIDLLVTSNGKITNLRRVTYLVLDEADRMFDMGFEPQITRIVQNIRPD 254

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSAT   +++ ++   L +P  I+V   S   E              ++   L +
Sbjct: 255 RQTVMFSATFPRQVEVLARKILTDPVEIQVGGRSIVNEN--ITQFVEIRPEKERFHRLLE 312

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L         +IF +++++  NL   L + G+   ++HG  DQ  R   +++FK     
Sbjct: 313 ILGEWYERGKLLIFVDKQESCDNLFRDLLRYGYPCLSLHGGKDQSDRESTIADFKGAVCN 372

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+ +AARGLD+ D+  V N+DVPN  E+Y+HR+GRTGRAG  G A T +  ++ ++ 
Sbjct: 373 ILVATSIAARGLDVKDLVLVVNYDVPNHHEDYVHRVGRTGRAGAKGTAITFIGPDEERYA 432

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K + +    +  DL  +
Sbjct: 433 PDLVKALRESGAAIPQDLQRI 453


>gi|302308377|ref|NP_985263.2| AER408Wp [Ashbya gossypii ATCC 10895]
 gi|299789426|gb|AAS53087.2| AER408Wp [Ashbya gossypii ATCC 10895]
          Length = 398

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 123/380 (32%), Positives = 210/380 (55%), Gaps = 7/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+  P+ IQ + I  +++  DV   AQ+GTGKTA+F + ML 
Sbjct: 24  TFESMKLQENLLRGIYGYGFEAPSAIQSRAITQIIRGKDVIAQAQSGTGKTATFTIGMLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     ++    L+L PTRELAAQ++      G   N+      GG   +    K+ +
Sbjct: 84  VIDSSSKDLQA---LVLSPTRELAAQISQVVRNLGDYMNVVALACTGGKALQQDISKVNK 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR--MLDMGFIPYIQNITSLVPFTRQ 179
           G  V+  TPGR+LD   R  +   ++++LV+DEAD      +GF   + +I + +P + Q
Sbjct: 141 GCHVMSGTPGRVLDMIKRRIINTRHVKMLVLDEADELLSETLGFKQQLYDIFTKLPSSVQ 200

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++ SATM+ ++ +V++ F+ +P +I V     + E I+   +    +  K   L     
Sbjct: 201 VVVVSATMSKDVLEVTKKFMSDPVKILVKRDEVSLEGIKQYHINVDKEEWKFDTLCDLYD 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T    +IFCN KK V  L H L +  F+V +IHG++ Q  R K++S+F+ G+ +++
Sbjct: 261 SLTITQC--VIFCNTKKKVDWLSHKLIQNNFAVASIHGDMKQDDRDKVMSDFRSGSSRVL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   + +E++  + +
Sbjct: 319 ISTDVWARGIDVQQVSLVINYDLPELLENYIHRIGRSGRFGRKGVAINFITREEVTKLKS 378

Query: 360 IEKLIEKKVDWLNGDLSSLN 379
           IEK    K+  +  D+ SL+
Sbjct: 379 IEKHYSIKIKPMPADIDSLS 398


>gi|330792086|ref|XP_003284121.1| hypothetical protein DICPUDRAFT_27074 [Dictyostelium purpureum]
 gi|325085935|gb|EGC39333.1| hypothetical protein DICPUDRAFT_27074 [Dictyostelium purpureum]
          Length = 593

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 132/368 (35%), Positives = 206/368 (55%), Gaps = 2/368 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F        ++  ++ AG+  PTPIQ +  P+ L+  D+ G+A+TG+GKT +F+LP  
Sbjct: 219 IHFNQAPFPNYLMKEIMAAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSI 278

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +    +        P  L+L PTRELA Q+ +   K+G    ++   + GG    +Q   
Sbjct: 279 VHINAQPTLKPGDGPIVLVLAPTRELALQIQEQARKFGGTSQISNVCVYGGASKHSQVMM 338

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G +++I TPGR++D    G   +  +  LV+DEADRMLDMGF P I+ I S +   R
Sbjct: 339 LKKGVEIVIATPGRLIDILTSGDTNLRRVTYLVLDEADRMLDMGFEPQIRKILSQIRPDR 398

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT   E+Q ++ +FL +  ++ + +   TA    +  V   ++Y KK  L + L
Sbjct: 399 QTLMFSATWPKEVQSLANDFLSDHIQVHIGSSELTANHNVNQIVEVCSEYEKKERLFKFL 458

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +       IIF   +K V  L  SL+  GF    IHGN  Q  R  +LS FK G   +
Sbjct: 459 EANVSKDDKVIIFAETRKGVDELHRSLQSAGFKSIGIHGNKSQPERDFVLSQFKNGIFPI 518

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+DLA+RGLD+ D+  V N+D PN  E Y+HRIGRT RAG  G + + + +E+ +  +
Sbjct: 519 MIATDLASRGLDVKDIKFVVNYDFPNTIETYVHRIGRTARAGATGTSISFLTRENARLAN 578

Query: 359 AIEKLIEK 366
            + K++ +
Sbjct: 579 DLIKVLSE 586


>gi|125549135|gb|EAY94957.1| hypothetical protein OsI_16765 [Oryza sativa Indica Group]
          Length = 484

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 117/375 (31%), Positives = 196/375 (52%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 111 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 170

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++ +  +++    IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 171 KIDQDKNAIQVV---ILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRLYQ 227

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ N  +LV+DEAD++L   F P IQ +   +P  RQ L
Sbjct: 228 PVHLLVGTPGRILDLTKKGVCVLKNCSMLVMDEADKLLSPEFQPSIQELIRYLPSNRQIL 287

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +++  + +L  P  I          T++           ++       L S
Sbjct: 288 MFSATFPVTVKEFKDKYLPKPYVI----NLMDELTLKGITQFYAFVEERQKVHCLNTLFS 343

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 344 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 403

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 404 TDLFTRGIDIQAVNVVINFDFPKSAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 463

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 464 QELGTEIKPIPPQID 478


>gi|110740927|dbj|BAE98559.1| eukaryotic protein synthesis initiation factor 4A [Arabidopsis
           thaliana]
          Length = 412

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 194/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKT +F      
Sbjct: 40  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTTTFC---SG 96

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L++    +   + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 97  VLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 156

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 157 SVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 216

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 217 VFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDL--YE 274

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 275 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 334

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V ++D + +  I+
Sbjct: 335 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 394

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     V+ L  +++ L
Sbjct: 395 KFYNVVVEELPSNVADL 411


>gi|115459616|ref|NP_001053408.1| Os04g0533000 [Oryza sativa Japonica Group]
 gi|75327302|sp|Q7XMK8|RH6_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 6
 gi|32489827|emb|CAE04571.1| OSJNBb0039L24.10 [Oryza sativa Japonica Group]
 gi|113564979|dbj|BAF15322.1| Os04g0533000 [Oryza sativa Japonica Group]
 gi|125591093|gb|EAZ31443.1| hypothetical protein OsJ_15580 [Oryza sativa Japonica Group]
 gi|215701173|dbj|BAG92597.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 498

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 117/375 (31%), Positives = 196/375 (52%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 125 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 184

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++ +  +++    IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 185 KIDQDKNAIQVV---ILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRLYQ 241

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ N  +LV+DEAD++L   F P IQ +   +P  RQ L
Sbjct: 242 PVHLLVGTPGRILDLTKKGVCVLKNCSMLVMDEADKLLSPEFQPSIQELIRYLPSNRQIL 301

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +++  + +L  P  I          T++           ++       L S
Sbjct: 302 MFSATFPVTVKEFKDKYLPKPYVI----NLMDELTLKGITQFYAFVEERQKVHCLNTLFS 357

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 358 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 417

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 418 TDLFTRGIDIQAVNVVINFDFPKSAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 477

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 478 QELGTEIKPIPPQID 492


>gi|115437436|ref|NP_001043295.1| Os01g0549400 [Oryza sativa Japonica Group]
 gi|143455968|sp|Q5JKF2|RH40_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 40
 gi|57899403|dbj|BAD88050.1| putative ATP-dependent RNA helicase DB10 [Oryza sativa Japonica
           Group]
 gi|113532826|dbj|BAF05209.1| Os01g0549400 [Oryza sativa Japonica Group]
 gi|125570769|gb|EAZ12284.1| hypothetical protein OsJ_02174 [Oryza sativa Japonica Group]
          Length = 792

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 137/378 (36%), Positives = 217/378 (57%), Gaps = 2/378 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   G  P+++  +  AG+  PTPIQ ++ P+ LQ  DV  IA+TG+GKT  ++LP   
Sbjct: 151 SFETGGFPPEILKEIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLPGFM 210

Query: 62  ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++ +   R  P  L+L PTRELA Q+ +   K+G++  ++   L GG P   Q + L+
Sbjct: 211 HIKRLQNNPRSGPTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRDLD 270

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR+ D     ++ +  +  LV+DEADRMLDMGF P I+ I   +P  RQT
Sbjct: 271 RGVDVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRRQT 330

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+++AT   E+++++E+ L +P ++ + +                   S+K   L+Q+L+
Sbjct: 331 LMYTATWPKEVRRIAEDLLVHPVQVTIGSVDELVANSAITQNVELITPSEKLRRLEQILR 390

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQD+    +I     K + +       + F   AIHG+  Q  R K+LS+F+ G   ++V
Sbjct: 391 SQDSGSKVLI-FCTTKRMCDQLARTLTRQFGASAIHGDKSQSEREKVLSHFRSGRSPILV 449

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G A+T    +D K+   +
Sbjct: 450 ATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQDSKYAADL 509

Query: 361 EKLIEKKVDWLNGDLSSL 378
            K++E     +  DL+ +
Sbjct: 510 IKILEGANQRVPRDLADM 527


>gi|332028589|gb|EGI68626.1| Putative ATP-dependent RNA helicase DDX43 [Acromyrmex echinatior]
          Length = 660

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 117/397 (29%), Positives = 204/397 (51%), Gaps = 11/397 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +    P ++  +    + KP+PIQ +  P++L   D+ GIAQTGTGKT +F+LP L  
Sbjct: 256 FHEF---PDILTEIRKQNFEKPSPIQCQAWPILLSGQDLIGIAQTGTGKTLAFLLPALIH 312

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                  R +   P  L++ PT    A   +        + +    + GG   + Q   +
Sbjct: 313 IDGQVTPRDKRTGPNVLVMAPT-RELALQIEKEVGKYSYHGIKAVCVYGGGNRKTQIDTV 371

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  ++I TPGR+ D      L ++ +  L++DEADRMLDMGF P I+     V   RQ
Sbjct: 372 TKGVQIVIATPGRLNDLVQANVLDVSAVTYLILDEADRMLDMGFEPQIRKTLLGVRPNRQ 431

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++ SAT    ++++++++++NP ++ V +    A       +    +  K   +  Q  
Sbjct: 432 TVMTSATWPQGVRRLAQSYMKNPIQVFVGSLDLAAVHSVTQRIYMANEDEKTDMMH-QFF 490

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q        I+F  +K  V ++   L        +IHG+ DQ  R + L + K G +Q++
Sbjct: 491 QEMGPQDKVIVFFGKKSKVDDVSSDLALTNIDCQSIHGDRDQSDREQALEDLKTGAVQIL 550

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RG+DI D+ HV N+D P   E Y+HR+GRTGRAGR G++ T + ++D  H  A
Sbjct: 551 LATDVASRGIDIEDITHVLNYDFPRDIEEYVHRVGRTGRAGRTGESITFMTRQDWHHAKA 610

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
           +  ++E+    +  ++  +    E+ D  +    +++
Sbjct: 611 LIDILEEANQEVPEEIYKMA---ERYDAWKKKKEQED 644


>gi|328779158|ref|XP_001122489.2| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
           mellifera]
          Length = 616

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 129/380 (33%), Positives = 202/380 (53%), Gaps = 3/380 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + G    V+  +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP +  
Sbjct: 112 FEEGGFPDYVLNEIHRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 171

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  LIL PTRELA Q+      +G +  +    + GG P   Q + LE
Sbjct: 172 INHQPRLNRNDGPIALILAPTRELAQQIQQVASDFGISSQVRNTCIFGGAPKGPQARDLE 231

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 232 RGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQT 291

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK-CALLQQLL 239
           L++SAT   E++ ++E FL +  +I + +    A       V    +Y K+   +     
Sbjct: 292 LMWSATWPKEVRNLAEEFLTDYIQINIGSLQLAANHNILQIVDVCEEYEKEGKLMKLLEE 351

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S +     IIF   K+ V ++  ++ + G+    IHG+  Q+ R  +L+ F+     ++
Sbjct: 352 ISNEPENKTIIFVETKRKVDDITRAINRYGWQAIGIHGDKSQQERDYVLNQFRNSRSAIL 411

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV  V N D P+ +E+Y+HRIGRTGR+ R G A+      +      
Sbjct: 412 VATDVAARGLDVEDVKFVINLDYPSNSEDYVHRIGRTGRSQRTGTAYAFFTPGNAHKASD 471

Query: 360 IEKLIEKKVDWLNGDLSSLN 379
           + +++E+    +N  L  L+
Sbjct: 472 LIQVLEEAKQVVNPKLYELS 491


>gi|187933251|ref|YP_001885671.1| cold-shock deAd box protein a [Clostridium botulinum B str. Eklund
           17B]
 gi|187721404|gb|ACD22625.1| cold-shock deAd box protein a [Clostridium botulinum B str. Eklund
           17B]
          Length = 367

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 130/370 (35%), Positives = 203/370 (54%), Gaps = 6/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  L ++  +V  +   G   PTPIQ ++IP +L   DV G A+TGTGKT +F+LP+ 
Sbjct: 1   MNFKSLEINENIVNILNKNGIKTPTPIQEESIPKILLGKDVIGEAKTGTGKTLAFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +       +    LIL PTRELA Q+ +  +K   N ++ +    GG    +Q KKL+
Sbjct: 61  QNISPNTNGTQ---VLILSPTRELAIQITEETKKLNVNNDINILAAYGGKDIGSQLKKLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH  R  + ++ ++ +VIDEAD+ML MGF   I+ I        QT
Sbjct: 118 HNIHLVIATPGRLLDHIERKTIDLSKLKTIVIDEADQMLLMGFKNDIEKIMKAASKKHQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  +++K++  ++ +P  I++ +P+   + I            +          
Sbjct: 178 LCFSATMDSQVKKLAYRYMIDPLFIDIKSPTIAVDKI---KQQVVETTDRWKQDSLCAAL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIFC  K+    L  +L ++G +   IH ++ Q  R +I+ +F+   IQ ++
Sbjct: 235 QEDNPFMAIIFCRTKRRADVLEIALHQKGLNCQKIHSDVPQAKRERIMKSFRNADIQYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  V H++N+D P   E+YIHRIGRTGRAG  G     VA +D   ++AI
Sbjct: 295 ATDVAARGIDISGVSHIYNYDTPETPESYIHRIGRTGRAGEDGYTCMFVAPKDSYLLNAI 354

Query: 361 EKLIEKKVDW 370
           EK +   +  
Sbjct: 355 EKKLGFTIPR 364


>gi|71418343|ref|XP_810822.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70875414|gb|EAN88971.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 395

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 125/376 (33%), Positives = 204/376 (54%), Gaps = 6/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL  +++  +   GY KPT IQ + I    Q  D+   A +G+GKT++F + +L 
Sbjct: 24  TFEAMGLKEELLRGMYGYGYKKPTAIQKRFIVPFTQSRDLVAQASSGSGKTSAFCICLLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           + +      +    L+L PTRELA Q  D     G +  L     IGG   E   ++LE 
Sbjct: 84  VCQSALRETQG---LVLSPTRELALQTQDLCNNIGHHMGLAAYASIGGKSVEDDIRRLES 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L +N+++ LV+DEAD ML  GF   I +    +    Q +
Sbjct: 141 GVQIVSGTPGRVFDMIKRRHLRVNHLKTLVLDEADEMLGKGFKAQI-HDIYRMIPPLQVV 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  ++ +++E F+  P RI V     T ++I   FVA   + +K   L       
Sbjct: 200 LVSATLPVDVLEMTEKFMTEPVRILVRRDEITVDSIMQYFVAVDEEKNKFETLCDL--YD 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+ + +IFCN +K V  L   + K+ FSV  +HG++ Q  R +I+ NF+EG  +++++
Sbjct: 258 TLTIAHAVIFCNTRKKVEQLAKKMRKEKFSVSCMHGDMPQAERDEIMRNFREGKSRVLIS 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL +RG+D+  V  V N+D+P   E YIHRIGRTGR GR G A + V  ++++ +  +E
Sbjct: 318 TDLWSRGIDVEQVSLVLNYDLPFSREQYIHRIGRTGRMGRKGLAISFVKHDELRLLRDVE 377

Query: 362 KLIEKKVDWLNGDLSS 377
           +    +++ L  +++ 
Sbjct: 378 QFYATQIEELPANIAD 393


>gi|228473039|ref|ZP_04057796.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228275621|gb|EEK14398.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 588

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 130/373 (34%), Positives = 213/373 (57%), Gaps = 9/373 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLP 58
           M+ F  LGLS  ++ A+ D G+ +P+ +Q   IP++L+   D+  +AQTGTGKTA+F  P
Sbjct: 8   MNLFKTLGLSAPLLEAIDDLGFERPSEVQQAAIPVLLEAPTDMVALAQTGTGKTAAFGFP 67

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNK 117
           +L +++  +   RM + LIL PTREL  Q+A   ++Y K       + I G    E Q +
Sbjct: 68  LLQLIDPTQ---RMTQGLILAPTRELCLQIASELKQYAKYMPQVHIVAIYGGASIEEQAR 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++GA +++ TPGR+ D   R    +  I   V+DEAD ML+MGF   I++I S  P  
Sbjct: 125 SLKKGAHIIVATPGRMQDMMRREFTSIAQISYCVLDEADEMLNMGFYEDIRSILSETPDD 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           + T LFSATM  E+ K+++ F+ +PK I   T     +   +     Y    ++     +
Sbjct: 185 KNTWLFSATMPAEVAKIAKEFMHHPKEI---TIGHKNQASNNVLHECYIVNGRQRYEALK 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   +     ++FC  K++   +   L + G++  A+HG++ Q  R  ++  F+   IQ
Sbjct: 242 RLADANPSIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKGFRAKQIQ 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ D+ HV ++ +P+  E Y HR GRTGRAG+ G +  ++ K + K I
Sbjct: 302 MLVATDVAARGIDVDDITHVIHYQLPDEIETYTHRSGRTGRAGKSGVSMVILTKSEAKRI 361

Query: 358 DAIEKLIEKKVDW 370
             IEK+I+K  ++
Sbjct: 362 KTIEKIIQKTFEY 374


>gi|114776507|ref|ZP_01451552.1| Superfamily II DNA and RNA helicase [Mariprofundus ferrooxydans
           PV-1]
 gi|114553337|gb|EAU55735.1| Superfamily II DNA and RNA helicase [Mariprofundus ferrooxydans
           PV-1]
          Length = 414

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 163/375 (43%), Positives = 234/375 (62%), Gaps = 5/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  ++  +    Y KPTP+Q+++IP +L+  DV   AQTGTGKTA F LPML
Sbjct: 1   MTFASLGLSAPILETITVT-YTKPTPVQLESIPAILKGRDVMAAAQTGTGKTAGFTLPML 59

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L +G   R    R LIL PTRELA QV D+  +YG    L  A++ GG+    Q  KL
Sbjct: 60  HLLAQGPRVRANQVRALILVPTRELAGQVGDSVVRYGVRLPLRSAVVFGGVKINPQMMKL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD   +  +  N +EILV+DEADRMLDMGF+  ++ I +L+P  RQ
Sbjct: 120 RKGVDILVATPGRLLDLHQQNAVRFNQLEILVLDEADRMLDMGFMDELKKILALLPVKRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT +DE++ +++  + +P  I VN  +STA TIEHC      Q         + L
Sbjct: 180 NLMFSATYSDEIRALAKTIVHHPVEICVNPANSTATTIEHCLYPVDKQQKNAL---LKKL 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  ++FC  K+    L   LE+Q  S  AIHG+  Q +R + LS FK   +Q++
Sbjct: 237 IKDNDWQQVLVFCKTKQAADRLVRFLEQQAISAAAIHGDKSQGARTRALSEFKNSQVQVL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARGLDIP +  V N+D+P+ A++YIHRIGRTGRAG  G+A +LV  ++   + A
Sbjct: 297 VATDLAARGLDIPQLPQVVNYDLPHVAQDYIHRIGRTGRAGVSGQAVSLVCADEFDELAA 356

Query: 360 IEKLIEKKVDWLNGD 374
           +E++I++ +     +
Sbjct: 357 VERVIQQLITRKTME 371


>gi|72074252|ref|XP_780035.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68 isoform 1
           [Strongylocentrotus purpuratus]
 gi|115968722|ref|XP_001179006.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68 isoform 2
           [Strongylocentrotus purpuratus]
          Length = 883

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 120/387 (31%), Positives = 204/387 (52%), Gaps = 4/387 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +      V+  +  +G+  PTPIQ +  P+ L   D+ GIA TG+GKT S++LP + 
Sbjct: 110 EFHEASFPDYVMGELSKSGFSHPTPIQAQGWPVALSGRDLVGIAATGSGKTLSYLLPSIV 169

Query: 62  ILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +         V  P  L+L PTRELA QV      +G++  +    + GG P   Q + 
Sbjct: 170 HINHQPFLERGVDGPIALVLAPTRELAQQVQQVAFAFGRSSKIKSTCVYGGAPKGQQIRD 229

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D     K  +     +V+DEADRMLDMGF P I+ I   +   R
Sbjct: 230 LERGVEICIATPGRLIDFLENNKTNLRRCTYVVLDEADRMLDMGFEPQIRKIMEQIRPDR 289

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQ 237
           Q  ++SAT   +++ ++E+F+++   + + + + +A       +       K    +   
Sbjct: 290 QVQMWSATWPKDVRNLAEDFIRDYIMVNIGSLTLSANHNILQIIDVCEDSEKDKKLIQLL 349

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               Q+     ++FC  K+   +L   + + G+    +HG+  Q  R  +LS F++G   
Sbjct: 350 EEIMQEKDNKTLVFCETKRRTDDLVRRMRRDGWPAMCLHGDKSQPERDWVLSEFRDGRAP 409

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A+RGLD+ D+  V N+D PN +E+Y+HRIGRT R+ R G A+T   + ++K  
Sbjct: 410 ILVATDVASRGLDVTDIKFVINYDYPNSSEDYVHRIGRTARSTRTGTAYTFFTRNNMKQA 469

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEK 384
             +  ++++    +N  L SL     +
Sbjct: 470 ADLINVLQEAKQVINPKLISLAEEANR 496


>gi|329120622|ref|ZP_08249285.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327460846|gb|EGF07180.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 455

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 156/443 (35%), Positives = 249/443 (56%), Gaps = 22/443 (4%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F+ LGL  ++V A+ + GY  PTPIQ   IP VL  HD+   AQTGTGKTA+F+LP 
Sbjct: 1   MNAFSSLGLGAEIVSALAEQGYETPTPIQAAAIPKVLAGHDLLAAAQTGTGKTAAFMLPA 60

Query: 60  LTILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           L  L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+  + 
Sbjct: 61  LERLKRYANTSASPAMHPVRMLVLTPTRELADQIDKNVQAYIKNLPLRHTVLFGGVNMDK 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  G ++++ T GR+LDH  +  +    IE +V+DEADRMLDMGFI  I+ I  ++
Sbjct: 121 QTADLRVGCEIVVATVGRLLDHVKQKNINFAKIETVVLDEADRMLDMGFIDDIRAIMGML 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQTLLFSAT  D ++K++++F+  P+ +EV   ++    +E   +A      ++   
Sbjct: 181 PRERQTLLFSATFADPIRKLAQDFMNAPETVEVAAQNTANANVEQHVIAVDTFEKRRL-- 238

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             + L     +K  I+FC  K++V  +   L+++G +  +IHG+  Q++R++ L+ FKEG
Sbjct: 239 -LERLIVDLDIKQVIVFCKTKQSVDQVTRDLQRRGLAAQSIHGDKSQQTRLETLNAFKEG 297

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            ++++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ + + 
Sbjct: 298 GLRVLVATDVAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDENEQ 357

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           K  +A+  L    V            P+E+I+  +     K    PQ +       ++  
Sbjct: 358 KMFEAVCILTGNSV------------PVERIEGFEPQWWNKAAQ-PQNAQRPSENGRDGR 404

Query: 415 SQKSHIPLKESEKISKLQQDIQE 437
           +++     KE +     + D  E
Sbjct: 405 TRRDARNGKERDTAEPRRHDAPE 427


>gi|326329383|ref|ZP_08195707.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
 gi|325952709|gb|EGD44725.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
          Length = 615

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 143/367 (38%), Positives = 214/367 (58%), Gaps = 7/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLS  V+ AV   GY  P+ IQ  TIP +LQ  DV G+AQTGTGKTA+F LP+L+
Sbjct: 28  TFDSLGLSAGVLEAVKALGYETPSAIQAATIPTLLQGRDVVGLAQTGTGKTAAFALPVLS 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+  +     P+ L+L PTRELA QV + FE+Y  N +    L +  G  +  Q   L 
Sbjct: 88  NLDVYQ---NAPQALVLAPTRELALQVCEAFERYASNLDGVRILPVYGGQGYGPQLTALR 144

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGRI+DH  +G L ++ +  LV+DEAD ML+MGF   ++ I +  P  +Q 
Sbjct: 145 RGVHVVVGTPGRIMDHLEKGTLDLSQLRFLVLDEADEMLNMGFAEDVETILAETPEDKQV 204

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  +++++S+ +L++ + I V   + T   I   ++                ++
Sbjct: 205 ALFSATMPAQIRRLSKKYLRDAEEISVKAKTQTNTNITQRYLMVSYPQKVDALTRILEVE 264

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + M   I+F   K    +L   L  +GF+  AI+G+I Q  R K ++  K+G++ ++V
Sbjct: 265 NFEGM---IVFTRTKSETESLAEKLRARGFAATAINGDIAQAQREKTVNQLKDGSLDILV 321

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P   E Y+HRIGRTGRAGR G A + V   +   + AI
Sbjct: 322 ATDVAARGLDVERISHVVNYDLPTDVEAYVHRIGRTGRAGRTGDAISFVTPRERWLLRAI 381

Query: 361 EKLIEKK 367
           EK  + +
Sbjct: 382 EKHTKAQ 388


>gi|307204940|gb|EFN83479.1| Probable ATP-dependent RNA helicase DDX43 [Harpegnathos saltator]
          Length = 633

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 119/384 (30%), Positives = 199/384 (51%), Gaps = 8/384 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D    P ++  +   G+ KP+PIQ +  P++L   D+ GIAQTGTGKT +F+LP L  
Sbjct: 229 FKDY---PDILEEIRKQGFQKPSPIQCQAWPILLSGQDLIGIAQTGTGKTLAFLLPALIH 285

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                  R+  + P  L++ PT    A   +        + +    + GG   + Q   +
Sbjct: 286 IDGQSTPRSERKGPNVLVMAPT-RELALQIEKEVGKYSYHGIKAVCVYGGGNRKEQINIV 344

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  ++I TPGR+ D      L + ++  L++DEADRMLDMGF P I+     V   RQ
Sbjct: 345 TKGVQIVIATPGRLNDLVQAKVLDVTSVTYLILDEADRMLDMGFEPQIRKTLLDVRSDRQ 404

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++ SAT    ++++++++++NP ++ V +    A       V    +  K   +     
Sbjct: 405 TVMTSATWPQGVRRLAQSYMKNPIQVFVGSLDLVAVHTVTQRVYLIDEEEKNNMMFD-FF 463

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        I+F  +K  V ++   L   G    +IHG+ DQ  R + L + K G + ++
Sbjct: 464 REMGVNDKVIVFFGKKAMVDHVASDLAVAGIECQSIHGDRDQCDREQALEDMKTGNVHIL 523

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G++ T + ++D  H   
Sbjct: 524 LATDVASRGLDIEDITHVLNYDFPRDIEEYVHRVGRTGRAGRTGESITFMTRKDWSHAQQ 583

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE 383
           +  ++E+    + G+L  +    E
Sbjct: 584 LINILEEAHQEVPGELYKMAERYE 607


>gi|284047862|ref|YP_003398201.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
           DSM 20731]
 gi|283952083|gb|ADB46886.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
           DSM 20731]
          Length = 417

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 140/433 (32%), Positives = 219/433 (50%), Gaps = 21/433 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L +   +V  +   G   PTP+Q + IP +L   DV   AQTG GKT SFV+P+   
Sbjct: 5   FAQLKVDETMVEKLHRTGKDIPTPVQERAIPALLNGRDVIARAQTGVGKTLSFVIPLFDK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    +    + LIL PTRELA Q A    K   +  +    + GG  FE + +K+   
Sbjct: 65  VDP---QKEFVQALILSPTRELAQQTAGEIRKLEGDTGIRTLTVSGGRDFEEEKRKIGHR 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A VL+ TPGR+LDH  +G   +  ++ LV+DE D ML  GF   I+ + SL+P   QT++
Sbjct: 122 AQVLVGTPGRLLDHLRKGNTSLGGVKYLVLDEVDEMLRQGFGEDIETLLSLMPQPHQTMM 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+ +E++K+      NP  I++    STA TI               A     L  +
Sbjct: 182 CSATLDEEVRKLGRQLTTNPLVIDIAPKESTASTI---HQICIKVSEDHKADALASLIRR 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++FC  K+  + L   L  +GF+V  +HG++ Q  R +++ NF++  +Q++VAS
Sbjct: 239 YNPFLMLVFCCSKERAIELSDWLYGEGFNVDVLHGDMSQTKRRQVMENFRKAKLQILVAS 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  +  V N+D+P+  + Y+HRIGRTGRAG  G A T    ++ + +  +EK
Sbjct: 299 DIAARGLDVEGITQVVNYDIPHDPDWYVHRIGRTGRAGSEGTAITFYTADETRWLQNLEK 358

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS-QKSHIP 421
                          L+  LE+ ++A     R   P+  K     +R K+     K    
Sbjct: 359 --------------KLDITLERQNLAGETVRRTVKPVRPKKKRVPKRGKSAVGPNKRGTK 404

Query: 422 LKESEKISKLQQD 434
             E+ +  K ++ 
Sbjct: 405 YAEASRKQKRKEK 417


>gi|262280249|ref|ZP_06058033.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
           [Acinetobacter calcoaceticus RUH2202]
 gi|262258027|gb|EEY76761.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
           [Acinetobacter calcoaceticus RUH2202]
          Length = 640

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 132/389 (33%), Positives = 213/389 (54%), Gaps = 11/389 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+  L   +  A+   G+  PT +Q + IP  L+  D+   +QTG+GKTA+F+LP L 
Sbjct: 4   SFAEFSLHETLQQALEGLGFTTPTTVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLN 63

Query: 62  ---------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                      +     V  P  L++ PTRELA QV+ +     ++        I G   
Sbjct: 64  ALAGQESVVPFKDRMKAVTQPNILVISPTRELAQQVSQDAIALVRHMKGVRIAAIMGGMP 123

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
            A+  +  +GA V++ TPGR+LD  NR ++ ++ ++ L++DEADRMLD+GF   ++ I+ 
Sbjct: 124 FAKQIQQLKGAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEADRMLDLGFSEDLEAISE 183

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L    +QTL+FSAT  D + +++   +++P RI + T  ST   I      T     K  
Sbjct: 184 LAANRKQTLMFSATFADRIIRLASCMMKDPMRIAIETGHSTNTDITQTLHWTDGFEHK-- 241

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L     S + +   ++F + +++   L   L + G SV A+HG + Q  R + L + +
Sbjct: 242 KKLLTHWLSDENLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIR 301

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL    
Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYR 361

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           +   I A+E+ +E ++     +    +PP
Sbjct: 362 ERGKIRALEEYLEARLSVSEIEGLEPSPP 390


>gi|218184840|gb|EEC67267.1| hypothetical protein OsI_34232 [Oryza sativa Indica Group]
          Length = 524

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 116/375 (30%), Positives = 192/375 (51%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 151 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 210

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + +IL PTRELA Q +   ++ GK  N+ V +  GG   +    +L +
Sbjct: 211 KIDP---EKNAIQVVILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQ 267

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P I+ +   +P  RQ L
Sbjct: 268 PVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLLAPEFQPSIEQLIHFLPANRQLL 327

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++   E +L  P  I          T++           ++       L S
Sbjct: 328 MFSATFPVTVKDFKEKYLPRPYVI----NLMDELTLKGITQYYAFVEERQKVHCLNTLFS 383

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 384 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 443

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 444 TDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 503

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 504 QELGTEIKTIPPQID 518


>gi|209876956|ref|XP_002139920.1| ATP-dependent RNA helicase [Cryptosporidium muris RN66]
 gi|209555526|gb|EEA05571.1| ATP-dependent RNA helicase, putative [Cryptosporidium muris RN66]
          Length = 406

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 115/371 (30%), Positives = 184/371 (49%), Gaps = 7/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+FV+P+L 
Sbjct: 34  DFEDYFLKRELLMGIYEKGFERPSPIQEESIPVALAGKDILARAKNGTGKTAAFVIPLLE 93

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +     +    + LIL PTRELA Q +   ++ GK+ ++   +  GG        +L  
Sbjct: 94  KINT---KKNTIQGLILVPTRELALQTSSIVKQLGKHISVQCMVSTGGTSLRDDILRLNN 150

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL+ TPGR+LD  N+    ++   + ++DEAD++L   F P I+ +   +P  RQ L
Sbjct: 151 PVHVLVGTPGRVLDLANKKVCNLSGCFMFIMDEADKLLSPEFQPIIEELIEFLPKERQIL 210

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    ++     F                 T++           K+       L  
Sbjct: 211 LYSATFPVTVKG----FKDKYLSNAHEINLMDELTLKGVTQYYAFVEEKQKLHCLNTLFC 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 267 KLQINQAIIFCNSVARVELLAKKITELGSSCFYIHARMLQSHRNRVFHDFRNGACRCLVS 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  L+  ED  ++  IE
Sbjct: 327 SDLITRGIDIQSVNVVINFDFPKYSETYLHRIGRSGRFGHLGLAINLITYEDRYNLYRIE 386

Query: 362 KLIEKKVDWLN 372
           K +  ++  + 
Sbjct: 387 KELNTEITSIP 397


>gi|38564733|gb|AAR23806.1| initiation factor eIF4A-15 [Helianthus annuus]
          Length = 413

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 194/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     V   + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 101 QLDYN---VVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSA 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLRSDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V  +D K +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDEKMLGDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     V+ L  +++ L
Sbjct: 396 KFYNVVVEELPSNVADL 412


>gi|143360935|sp|Q109G2|RH12_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 12
 gi|10140782|gb|AAG13612.1|AC078840_3 putative RNA helicase [Oryza sativa Japonica Group]
 gi|110289357|gb|ABB47852.2| ATP-dependent RNA helicase ste13, putative, expressed [Oryza sativa
           Japonica Group]
 gi|215706425|dbj|BAG93281.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222613101|gb|EEE51233.1| hypothetical protein OsJ_32082 [Oryza sativa Japonica Group]
          Length = 521

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 116/375 (30%), Positives = 192/375 (51%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 148 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 207

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + +IL PTRELA Q +   ++ GK  N+ V +  GG   +    +L +
Sbjct: 208 KIDP---EKNAIQVVILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQ 264

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P I+ +   +P  RQ L
Sbjct: 265 PVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLLAPEFQPSIEQLIHFLPANRQLL 324

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++   E +L  P  I          T++           ++       L S
Sbjct: 325 MFSATFPVTVKDFKEKYLPRPYVI----NLMDELTLKGITQYYAFVEERQKVHCLNTLFS 380

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 381 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 440

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 441 TDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 500

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 501 QELGTEIKTIPPQID 515


>gi|332520832|ref|ZP_08397292.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332043362|gb|EGI79558.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 622

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 130/373 (34%), Positives = 214/373 (57%), Gaps = 8/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F +LGL+  ++  + D G+  P+ +Q K IP++LQ   D+  +AQTGTGKTA+F  PML
Sbjct: 3   TFQELGLNEDLLKGITDLGFETPSEVQEKAIPILLQDEGDLVALAQTGTGKTAAFGFPML 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++      R  + LIL PTREL  Q+A+  + YGK       + I G      Q +++
Sbjct: 63  QKIDVN---SRTTQGLILSPTRELCLQIANEMKAYGKYCKGLNVVAIYGGSSITDQAREV 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA +++ TPGR+ D  +R  + +  I+  V+DEAD ML+MGF   I +I S  P  + 
Sbjct: 120 KRGAQIIVATPGRMKDMISRKLVDITKIQYSVLDEADEMLNMGFKEDITDILSGTPKDKS 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM  E+ +++++F+  P+ I   T     E+  +     Y   ++      + L
Sbjct: 180 TWLFSATMPKEVARIAKDFMHEPQEI---TVGHKNESTSNVSHEYYLVNARDRYQALKRL 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     +IFC  K++   +   L + G+S  A+HG++ Q  R  ++  F+   IQ++
Sbjct: 237 ADANPDIFSVIFCRTKRDTQKVAEQLIEDGYSAGALHGDLSQNQRDIVMKQFRTRQIQML 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV HV N+ + +  E Y HR GRTGRAG+ G +  +V+K +++ + +
Sbjct: 297 VATDVAARGIDVDDVTHVINYQLSDEIETYTHRSGRTGRAGKTGVSMVIVSKSEVRRLRS 356

Query: 360 IEKLIEKKVDWLN 372
           IE++I KK +  +
Sbjct: 357 IERIINKKFEKKD 369


>gi|282891599|ref|ZP_06300090.1| hypothetical protein pah_c180o092 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498567|gb|EFB40895.1| hypothetical protein pah_c180o092 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 399

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 118/402 (29%), Positives = 209/402 (51%), Gaps = 5/402 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL P ++ A+    + +P+PIQ   IPL+LQ+ D+  +A+TG+GKTA+  +P+  
Sbjct: 3   SFLDFGLDPTILKALEKLKFSEPSPIQKAAIPLILQKKDLIALAKTGSGKTAACAIPICD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+    LI+ PTRELA Q A   +K G    +    L GG     Q  KL+ 
Sbjct: 63  RVDVNSNSVQ---ALIVVPTRELALQYATETQKIGAEKGVKTFALFGGEDAAMQQSKLKH 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  VL+ TPGR++D     ++ ++++E L++DEAD ML MGF   ++ I   +    QTL
Sbjct: 120 GVQVLVVTPGRLIDFVYSRQIDLSHVETLILDEADEMLSMGFYDDLEFIIQCLVHEHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  +++ +++  +Q+P  + +    +T + IEH F+       +   +     Q+
Sbjct: 180 LFSATMPKQIRDIAKKHMQSPLEVSLIGEDATPDMIEHHFLYCRYHEKEHNLIELIKTQT 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                       + + V  +     +   ++  +H  + Q  R  + + F+   IQL+VA
Sbjct: 240 PTKAIIFCSSRQECEKVTYVLRK--QLHETIDFLHAGLSQDIRSAVTNKFRTNKIQLLVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ +RGLD   V HVF + + +  + YIHR GRTGR  + G   TLV + +++ ++ + 
Sbjct: 298 TDVVSRGLDFSSVSHVFIYHLADDLDLYIHRSGRTGRYEKAGTVITLVTQRELRTLNRLL 357

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           K+++K+ +W+       +   +K    +  + ++    P  S
Sbjct: 358 KVLKKEPNWIGPPPPPPSQNTDKTREKKRFYPKRKPANPSSS 399


>gi|319900501|ref|YP_004160229.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
 gi|319415532|gb|ADV42643.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
          Length = 655

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 137/385 (35%), Positives = 225/385 (58%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+S ++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++
Sbjct: 3   TFEELGVSAEIRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             +       R+P++LIL PTREL  Q+A +   Y K  N    L + G    E+Q + L
Sbjct: 63  QQINVS---KRIPQSLILCPTRELCLQIAGDLNDYSKYINGLRVLPVYGGSSIESQIRAL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G  +++ TPGR+LD   R  + ++ I+ +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KQGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILADVPQERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+N+L + K I +   +   E+  +     +  ++K      + +
Sbjct: 180 TLLFSATMSPEIARISKNYLHDAKEITIGRKN---ESTNNVKHVVFCVHAKDKYAALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+
Sbjct: 237 VDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRD 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE++I KK +   G++ + N   EK
Sbjct: 357 IERIIGKKFE--QGEMPTANQICEK 379


>gi|74693276|sp|Q755W0|FAL1_ASHGO RecName: Full=ATP-dependent RNA helicase FAL1
          Length = 398

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 123/380 (32%), Positives = 209/380 (55%), Gaps = 7/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+  P+ IQ + I  +++  DV   AQ+GTGKTA+F + ML 
Sbjct: 24  TFESMKLQENLLRGIYGYGFEAPSAIQSRAITQIIRGKDVIAQAQSGTGKTATFTIGMLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     ++    L+L PTRELAAQ++      G   N+      GG   +    K+ +
Sbjct: 84  VIDSSSKDLQA---LVLSPTRELAAQISQVVRNLGDYMNVVALACTGGKALQQDISKVNK 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR--MLDMGFIPYIQNITSLVPFTRQ 179
           G  V+  TPGR+LD   R  +   ++++LV+DEAD      +GF   + +I + +P + Q
Sbjct: 141 GCHVMSGTPGRVLDMIKRRIINTRHVKMLVLDEADELLSETLGFKQQLYDIFTKLPSSVQ 200

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++ SATM+  + +V++ F+ +P +I V     + E I+   +    +  K   L     
Sbjct: 201 VVVVSATMSKVVLEVTKKFMSDPVKILVKRDEVSLEGIKQYHINVDKEEWKFDTLCDLYD 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T    +IFCN KK V  L H L +  F+V +IHG++ Q  R K++S+F+ G+ +++
Sbjct: 261 SLTITQC--VIFCNTKKKVDWLSHKLIQNNFAVASIHGDMKQDDRDKVMSDFRSGSSRVL 318

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   + +E++  + +
Sbjct: 319 ISTDVWARGIDVQQVSLVINYDLPELLENYIHRIGRSGRFGRKGVAINFITREEVTKLKS 378

Query: 360 IEKLIEKKVDWLNGDLSSLN 379
           IEK    K+  +  D+ SL+
Sbjct: 379 IEKHYSIKIKPMPADIDSLS 398


>gi|188588593|ref|YP_001920789.1| cold-shock deAd box protein a [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188498874|gb|ACD52010.1| cold-shock deAd box protein a [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 367

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 129/370 (34%), Positives = 204/370 (55%), Gaps = 6/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LG++  +V  +   G   PT IQ ++IP +L   DV G A+TGTGKT +F+LP+ 
Sbjct: 1   MNFKSLGINENIVNILNKNGIKTPTAIQEESIPKILSGKDVIGEAKTGTGKTLAFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + LIL PTRELA Q+ +  +K   N ++ +    GG    +Q KKL+
Sbjct: 61  QNI---SPDTNGTQVLILSPTRELAIQITEETKKLNVNNDINILAAYGGKDIGSQLKKLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH +R  + ++ ++ +VIDEAD+ML MGF   I+ I  +     QT
Sbjct: 118 HNVHLVIATPGRLLDHIDRKTIDLSKLKTIVIDEADQMLLMGFKNDIEKIMKVASKKHQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  +++K++  ++ +P  I++ +P+   + I            +          
Sbjct: 178 LCFSATMDSQVKKLAYRYMIDPLFIDIKSPTIAVDKI---KQQVVETTDRWKQDSLCATL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIFC  K+    L  +L ++G +   IH ++ Q  R +I+ +F+   IQ ++
Sbjct: 235 QEDNPFMAIIFCRTKRRADVLEIALHQKGLNCQKIHSDVPQAKRERIMKSFRNADIQYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  V H++N+D P   E+YIHRIGRTGRAG  G     VA +D   ++AI
Sbjct: 295 ATDVAARGIDISGVSHIYNYDTPETPESYIHRIGRTGRAGEDGYTCMFVAPKDSSLLNAI 354

Query: 361 EKLIEKKVDW 370
           E  +   +  
Sbjct: 355 ETKLGFTIPR 364


>gi|47937760|gb|AAH72323.1| Ddx49-A-prov protein [Xenopus laevis]
          Length = 429

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 150/422 (35%), Positives = 217/422 (51%), Gaps = 13/422 (3%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           GLS  ++      G +KP+P+Q   IP +L+  D  G A+TG+GKTA+FVLP+L  L + 
Sbjct: 14  GLSSWLIDQCSQLGILKPSPVQENCIPPILEGRDCMGCAKTGSGKTAAFVLPILQKLSE- 72

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
                    L+L PTRELA Q+A+ F   GK   L   ++IGG+   AQ  +L R   ++
Sbjct: 73  --DPFGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIIGGMDMVAQALELSRKPHIV 130

Query: 127 ICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQN---ITSLVPFTRQTLL 182
           I TPGR+ DH        +  I  LV+DEADR+L+ G   + Q+   I   VP  RQTLL
Sbjct: 131 IATPGRLADHIRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTQDLQVILEAVPAQRQTLL 190

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT+TD LQ++    +  P   E  +   T E   +   +            L Q  Q 
Sbjct: 191 FSATLTDTLQELKTVAMNKPFFWESTSEVRTVEQLDQRYILVPEKVKDAYLVYLIQKFQD 250

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + +IF N  K    L   L +  F   A+H  + Q+ R   L+ FK    ++++A
Sbjct: 251 EHEDWSIMIFTNTCKTCQILNMMLREFSFPSVALHSMMKQKQRFAALAKFKSSVFKILIA 310

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP V  V N + P   + YIHR+GRT RAGR+G A TLV + DI  + AIE
Sbjct: 311 TDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGMAITLVTQYDIHLVHAIE 370

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
             I  K++      + +   L      Q N AR+   I  + T FD +K++   + ++  
Sbjct: 371 GQINMKLEEFKVKENEVLKIL-----TQVNVARRECEIKLECTDFDEKKRDKQEETAYPG 425

Query: 422 LK 423
            K
Sbjct: 426 RK 427


>gi|168701792|ref|ZP_02734069.1| RNA helicase DeaD [Gemmata obscuriglobus UQM 2246]
          Length = 572

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 146/368 (39%), Positives = 215/368 (58%), Gaps = 1/368 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL  ++V  +   GY +PTPIQ + IP +++ HD+ G A TGTGKTA+F LP+L  
Sbjct: 23  FAKLGLDSRLVERLTGLGYEEPTPIQREAIPPLIEGHDLIGRAATGTGKTAAFSLPILHG 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +  AR + P +LIL PTRELA QVA++  KYG+   + V  + GG P + Q + L+RG
Sbjct: 83  LARSTARTK-PTSLILVPTRELAMQVAESVAKYGQPLGVRVLPIYGGAPMDQQIRALDRG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR LDH  R  L ++ I ++V+DEAD MLDMGF   I+ I +  P  RQT L
Sbjct: 142 IDVVVATPGRALDHMRRTTLKLDAITVVVLDEADEMLDMGFAEDIEAILAATPTERQTAL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   ++ ++   L+N   I V      A  +       Y    +        +   
Sbjct: 202 FSATMAPRIKAIAVKHLKNATEIHVTRDPVPAGELPKVRQTAYVVQRQYKLAALGRVLDG 261

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           ++    +IFC  +  V  L  +L  +G+   A+HG + Q +R +++  F+ G   L+VA+
Sbjct: 262 ESPAAALIFCKTRSEVDELTEALGGRGYRPEALHGGMAQDARDRVMRLFRAGQANLLVAT 321

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  + HV NF +P   ENY+HRIGR GRAGR G A T+    +   + AIE+
Sbjct: 322 DVAARGLDVEHLTHVVNFSLPLGIENYVHRIGRVGRAGREGVAITVAEPREQGALRAIER 381

Query: 363 LIEKKVDW 370
              +++++
Sbjct: 382 HTGQRIEY 389


>gi|195060349|ref|XP_001995786.1| GH17577 [Drosophila grimshawi]
 gi|193896572|gb|EDV95438.1| GH17577 [Drosophila grimshawi]
          Length = 1302

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 227/447 (50%), Gaps = 12/447 (2%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
             +A  G+S K +  +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 574  TWAQCGVSKKEMDVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 633

Query: 62   ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +              +I+ PTREL  Q+  +  ++ ++  L    + GG     Q  +L
Sbjct: 634  HILDQPTLEDGDGAIAIIMAPTRELCMQIGKDIRRFSRSLGLRPVCVYGGTGISEQIAEL 693

Query: 120  ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 694  KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRP 753

Query: 177  TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             RQT++FSAT   +++ ++   L+ P  + V   S   +               K   L 
Sbjct: 754  DRQTVMFSATFPRQMEALARRILKKPVEVIVGGRSVVCKD--VEQHVVILNDEAKFFKLL 811

Query: 237  QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +LL       + I+F ++++N   L   L +  +   ++HG IDQ  R   + +FK G +
Sbjct: 812  ELLGIYQETGSIIVFVDKQENADILLRDLMRASYPCMSLHGGIDQFDRDSTIIDFKSGKV 871

Query: 297  QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR GRTGRAG  G AFT +  E  ++
Sbjct: 872  RLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGNKGCAFTFITPEQARY 931

Query: 357  IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-----KK 411
               + +  +     +  +L +L    +    A+            K   FD +     K+
Sbjct: 932  AGDVIRAFDLSGTLIPPELQTLWTDYKAAQEAEGKTVHTGGGFSGKGFKFDEQEFNAVKE 991

Query: 412  NYSSQKSHIPLKESEKISKLQQDIQEN 438
            +   QK+ + L +S+    ++QDI + 
Sbjct: 992  SKKLQKAALGLADSDDEEDIEQDIDQQ 1018


>gi|166014135|gb|ABY77970.1| vasa [Thunnus orientalis]
          Length = 644

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 140/456 (30%), Positives = 228/456 (50%), Gaps = 31/456 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 208 MTFDEAALCESLRKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 267

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + ++ P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 268 QQLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGH 327

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
           Q +++ERG +V+  TPGR+LD   RGK+ ++ +  LV+DEADRMLDMGF P ++      
Sbjct: 328 QIREIERGCNVVCGTPGRLLDMIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRRLVGSP 387

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++Q+++ +FL+             A +          ++SK
Sbjct: 388 GMPSKENRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSK 447

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +       L      +  ++F   K+    +   L ++     +IHG+ +QR R + L++
Sbjct: 448 RE--QLLDLLKTTGTERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALAD 505

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDIPDV HV NFD+PN  + Y+HRIGRTGR G  G+A +   
Sbjct: 506 FRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYD 565

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            + D +   ++  ++ K    +   L                 +  + P    +TGF+  
Sbjct: 566 PDADGQLARSLVTVLSKAQQEVPSWLEE---------------SAFSGPA---TTGFNPP 607

Query: 410 KKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGF 445
           +KN++S  S       +   K Q  +Q    D   +
Sbjct: 608 RKNFASTDSRKRGSFQDNSVKSQPAVQTAADDDEEW 643


>gi|119510101|ref|ZP_01629241.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414]
 gi|119465288|gb|EAW46185.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414]
          Length = 500

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 139/362 (38%), Positives = 211/362 (58%), Gaps = 5/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS K V  + + G+  PT IQ + IP +L   DV G +QTGTGKTA+F LP+L
Sbjct: 3   LSFQELGLSQKRVEQLENIGFTTPTNIQTQAIPQLLAGRDVVGQSQTGTGKTAAFSLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+     V+    L+L PTRELA QV D   ++  +  L +  + GG   E Q  +L+
Sbjct: 63  EQLDVNHKAVQ---ALVLAPTRELAIQVHDAINQFVGDEGLRILAIYGGQSIERQMMQLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++D  +RG L ++ ++  V+DEAD ML MGFI  +  I S  P  RQT
Sbjct: 120 RGVHMVVGTPGRMIDLLDRGCLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPKERQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++ +   FL+NP  + V  P ++   I          ++K  A   Q + 
Sbjct: 180 ALFSATMPPSIRMIVNKFLRNPATVTVEQPKASPNKINQVAYLIPRHWTK--AKALQPIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  +IF   ++    L + L+  G SV   HG++ Q++R ++L+ F+   ++ +V
Sbjct: 238 EMEDPETALIFVRTRRTAAELTNLLQGAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV NFD+P+ AE Y+HRIGRTGRAG+ G A +LV   + +   A 
Sbjct: 298 ATDIAARGLDVDLLSHVINFDLPDSAETYVHRIGRTGRAGKEGTAISLVQPFERRKQQAF 357

Query: 361 EK 362
           E+
Sbjct: 358 ER 359


>gi|169632326|ref|YP_001706062.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii SDF]
 gi|169151118|emb|CAO99784.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii]
          Length = 619

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 135/392 (34%), Positives = 218/392 (55%), Gaps = 11/392 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP L 
Sbjct: 8   TFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLH 67

Query: 62  I---------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                      ++    V  P  L+L PTRELA QV+ +   + ++        I G   
Sbjct: 68  NLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 127

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             +  +  +GA V++ TPGR+LD  NR +L ++ ++ L++DEADRMLD+GF   ++ I+ 
Sbjct: 128 FGKQIQQLKGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISD 187

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L     QTL+FSAT  D + +++E  +  P+RI + T  ST   I      T     K  
Sbjct: 188 LAVNRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHK-- 245

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L     + +T+   ++F + +++   L   L + G SV A+HG + Q +R + L + +
Sbjct: 246 KKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTARNRRLRSIR 305

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL    
Sbjct: 306 EGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYR 365

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
           +   I A+E  +E +++    +    +PP  +
Sbjct: 366 ERGKIRALEDYLEARLNVSEIEGLEASPPPAR 397


>gi|149909603|ref|ZP_01898256.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
 gi|149807307|gb|EDM67260.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
          Length = 446

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 157/463 (33%), Positives = 242/463 (52%), Gaps = 22/463 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+    +P+++ A+    Y + TP+Q + IP   +  D+   AQTGTGKTA+F LP+L
Sbjct: 1   MKFSSYSFTPEILRALDACNYDQMTPVQQQAIPAAGRGKDILANAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +      +        IL PTRELAAQV DN + Y +   L V  + GG+  E Q K+
Sbjct: 61  QQIADTPKDIHSGSVRALILVPTRELAAQVTDNIKAYSQFMELNVVSVYGGVKMETQTKQ 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G DVL+ TPGR+L+H       + N+E LV+DEADRMLDMGFI  I+ I   +    
Sbjct: 121 LKQGVDVLVATPGRLLEHLQLNHTNLANVEHLVLDEADRMLDMGFITDIRKILESISNDF 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT++ +++ ++   L +P  +  +  +STA TI+H       +  ++       
Sbjct: 181 QTMLFSATLSQQMKHLANELLTSPVIVSASKENSTASTIKHVIHPVEQRRKQELLSEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  K  ++F N K+   N+   L+  G      HG+  Q +R + L+ FKEG I+ 
Sbjct: 239 -IGTKNWKQVLVFVNTKEAANNIVKELKLDGIKADVCHGDKGQGARRRALTEFKEGKIRA 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  + +V N+D+P  AE+YIHRIGRTGRAG  G A + V +E+   + 
Sbjct: 298 LVATDVAARGLDVQGLKYVVNYDLPFLAEDYIHRIGRTGRAGETGNAVSFVCREEEHGLA 357

Query: 359 AIEKLIEKKVDW---LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            IE +I  K++       ++S+ +  +  I     +  R+            RR K    
Sbjct: 358 DIEAMIGYKIEREVVKGYEVSNRDRLIADISGRAAHERRQ-----------PRRNKAVGE 406

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
           +K     K +    K  +      +  L  +GN+ A   PK R
Sbjct: 407 EKVEHKPKTTAPTKKASKGKHRKTSAKLHRKGNVAA---PKQR 446


>gi|323305660|gb|EGA59400.1| Dhh1p [Saccharomyces cerevisiae FostersB]
          Length = 506

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 115/376 (30%), Positives = 188/376 (50%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L  +++  + +AG+ KP+PIQ + IP+ +   D+   A+ GTGKTA+FV+P L 
Sbjct: 47  TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 106

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    ++   + LI+ PTRELA Q +      GK+  ++  +  GG        +L  
Sbjct: 107 KVKP---KLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNE 163

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD  +R    +++  + ++DEAD+ML   F   I+ I S +P T Q+L
Sbjct: 164 TVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSL 223

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++    F+   +            T++           ++       L S
Sbjct: 224 LFSATFPLTVKE----FMVKHQHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFS 279

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   +   G+S    H  + Q+ R K+   F++G ++ +V 
Sbjct: 280 KLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVC 339

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+   D  ++  IE
Sbjct: 340 SDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIE 399

Query: 362 KLIEKKVDWLNGDLSS 377
           + +  ++  +   +  
Sbjct: 400 QELGTEIAAIPATIDK 415


>gi|218780301|ref|YP_002431619.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761685|gb|ACL04151.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 430

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 130/429 (30%), Positives = 208/429 (48%), Gaps = 14/429 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F + G    V   +  AGY  PTPIQ K IP V+Q  D+ G+AQTGTGKTA+FVLP+L
Sbjct: 1   MNFTNFGFHKHVAAGISAAGYSTPTPIQEKAIPQVMQGRDLMGLAQTGTGKTAAFVLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +        R LI+ PTRELA Q  +     G + NL    + GG+  + Q K+L+
Sbjct: 61  HRLMQKP--GNGVRALIIAPTRELAEQTHEAINTLGAHTNLKSVSVYGGVNLQRQVKQLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V+ C    +     +   L     +++ +              + +T L    RQT
Sbjct: 119 QSDIVVACPGRLLDHIGRKNVDLSRVEMLVLDEADQMFDMGFLPDIRKILTFLPRKGRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSATM  ++++++   L N                +    A Y         L   L 
Sbjct: 179 LMFSATMPAQIKRLAGEVLHNHVL----VQIGHVAPADTVKHAFYPVAQHLKTALLLQLL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++F   K     L + L K GFS  ++ GN+ Q  R+  ++ FK G  Q++V
Sbjct: 235 GSTGTESVLVFTRTKYKAKQLGNKLTKAGFSSASLQGNLSQSRRVDAMNGFKSGKYQVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ +V HV N+D+P+  E Y+HRIGRTGRA R G+AFT +  +D + + A+
Sbjct: 295 ATDIAARGIDVANVSHVINYDMPSTPETYMHRIGRTGRAKRRGEAFTFITNDDRQMVRAV 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDI-AQHNHARKNNPIPQKSTG-----FDRRKKNYS 414
            + +   V+     +   N      +   Q   A    P+ +K +       + R+K+ S
Sbjct: 355 NRAVGSNVE--QRTIHDFNYQASTPETGRQAAQATPRQPMKKKKSRQDFPPVEVRRKSDS 412

Query: 415 SQKSHIPLK 423
            ++++   K
Sbjct: 413 KRRANREAK 421


>gi|296387524|ref|ZP_06876999.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 449

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 145/372 (38%), Positives = 221/372 (59%), Gaps = 5/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   G+  PTPIQ + IP  L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV  +   YG++  L  A+  GG+    Q  K
Sbjct: 61  QRLTLEGPQVAANSVRALVLVPTRELAEQVHASIRDYGQHLPLRTAVAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD + +  +    ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGGDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D ++ ++   L++P  IEV+  ++ A+++    V    +   +       
Sbjct: 181 QTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQ 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  +  ++F   +K+V  L   L++QG +  +IHG+  Q +R++ L  FK G + L
Sbjct: 241 TNRW---RQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDL 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLA 357

Query: 359 AIEKLIEKKVDW 370
           AIE LI + +  
Sbjct: 358 AIETLIGQTLQR 369


>gi|158298749|ref|XP_318913.4| AGAP009808-PA [Anopheles gambiae str. PEST]
 gi|157014035|gb|EAA14161.4| AGAP009808-PA [Anopheles gambiae str. PEST]
          Length = 510

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 135/440 (30%), Positives = 231/440 (52%), Gaps = 12/440 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + DLGL   +  A     +  P+ IQ + IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 57  SWEDLGLIDTLCTACRGLKWKAPSKIQREAIPLALQGKDIIGLAETGSGKTGAFALPILQ 116

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     R       +L PTRELA Q+++ FE  G    +   +++GG+    Q  +L R
Sbjct: 117 ALLDNPQRYFAV---VLTPTRELAYQISEQFEALGATIGVKCCVIVGGMDLVTQAIQLAR 173

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR++DH    K      I  LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 174 KPHIIIATPGRLVDHLENTKGFSLKAIRYLVMDEADRILNMDFEEEVNKILKVMPRERRT 233

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT +++K+    L++P ++EV++   T E +           ++   +    + 
Sbjct: 234 FLFSATMTKKVKKLERASLRDPVKVEVSSKYQTVEKLLQ---YYLFIPARYKNVYLVHVL 290

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK    Q+++
Sbjct: 291 NELAGNSFMIFCSTCNNTVRTALMLRALGLAAVPLHGQMTQNKRLAALNKFKSQARQILI 350

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D+A+RGLDIP V  V N D+P  +++YIHR+GRT RAGR G+A T V + D++    I
Sbjct: 351 STDVASRGLDIPHVDVVLNLDIPMHSKDYIHRVGRTARAGRAGQAITFVTQYDVELYQRI 410

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E L+ KK+     +   +    E++  A      +   I ++      ++    S +   
Sbjct: 411 EHLLGKKLPEYKCEQDEVMALQERVAEAHRTARIEQRDIEERKASKGGKRGANDSDE--- 467

Query: 421 PLKESEKISKLQQDIQENDA 440
             +++E+ + +++ ++  +A
Sbjct: 468 --EDTEQFNGVRKRLKPGNA 485


>gi|145491061|ref|XP_001431530.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398635|emb|CAK64132.1| unnamed protein product [Paramecium tetraurelia]
          Length = 532

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 134/457 (29%), Positives = 228/457 (49%), Gaps = 13/457 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +++ D     ++   +    Y +PTPIQ    P+++  HD+ GIAQTG+GKT +++LP  
Sbjct: 71  IEWKDCQFPNQLNKRISLKAYNRPTPIQASVFPIIMSGHDLIGIAQTGSGKTIAYLLP-G 129

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  + + +   P  LIL PTRELA Q+ ++   + + YN+  A + GG     Q   L 
Sbjct: 130 LVHIESQRKKGGPMMLILVPTRELAMQIQEHISYFSEAYNMNSACIYGGADKRPQEMALA 189

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R  D+++ TPGR++D  +     ++N+  LV+DEADRMLDMGF   ++ I S +   RQT
Sbjct: 190 RDPDIVVATPGRLIDFLDAQVTNLHNVTYLVLDEADRMLDMGFEQQVRKIDSYIREDRQT 249

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + FSAT    +Q ++ +   N                           ++K   L  +L+
Sbjct: 250 VFFSATWPKTVQNLACDLCHNEPINLYIGSQEVTINKNITQETICLYQNEKQEELLYILE 309

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF   KK+  +L   L + GF   ++HG+  Q+ R  ++  FK    +L+ 
Sbjct: 310 ELSNKDKVLIFVETKKDCEDLASYLSEHGFFCMSLHGDKTQQQRDYVMKEFKASKCKLLC 369

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE--DIKHID 358
           A+D+A+RGLD+ D+  V N+D PN+ +NY+HRIGRTGRAG  G++ T++  +  D +   
Sbjct: 370 ATDVASRGLDVRDISLVINYDFPNQIDNYVHRIGRTGRAGDKGRSITMITLDAMDPRVAK 429

Query: 359 AIEKLIEKKVDWLNGDLSSL--NPPLEKIDIAQHNHARKNNPIPQKST------GFDRRK 410
            +  L++     +N DL     + P +K           + PI Q            + +
Sbjct: 430 QLVDLLKDSEQVVNDDLYDFAYSKPYQKSKRPNQRKKPNDKPITQSKPVNSNNLNTQKPQ 489

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQE--NDADSLGF 445
           +   + K+  P+K+S        ++++  +DA   GF
Sbjct: 490 QKQFNLKASSPVKQSTSSMPPPPELKKAFSDAPVFGF 526


>gi|325102936|ref|YP_004272590.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324971784|gb|ADY50768.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 408

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 137/412 (33%), Positives = 231/412 (56%), Gaps = 6/412 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    +S  +  ++ +AG+ KPT IQ K+IP +L   D+  IAQTGTGKTA+F +P++
Sbjct: 1   MKFNKYNISSGIKRSLEEAGFKKPTDIQFKSIPQILSGQDILAIAQTGTGKTAAFAIPLI 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           ++LE+ +  +  P     ++ PTRELA Q+   F   GK  ++    +IGG+       K
Sbjct: 61  SMLERSKPHLDKPTIKAVVMVPTRELAIQIEQVFLNLGKYTSIIPLAVIGGVEI-EPQLK 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
               ADVLI TPGRI+D   +G L +  I+ LV+DEADRML+ GF   I+ + +L+P  R
Sbjct: 120 KLNKADVLIATPGRIMDLVFKGHLYLKQIDFLVLDEADRMLEQGFYNDIKKLITLLPKRR 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+ FSAT+ D ++ ++   +  P RI+++     ++ ++H          +      + 
Sbjct: 180 QTMFFSATINDTIKDLAYALVNKPVRIQLSPKDPVSKNVDHAVAYVGMDDKRFF---LER 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  ++  K  I+F   K     +  ++E+       IHG+ DQ++R ++L NF++G  Q+
Sbjct: 237 LIKENQGKKIIVFVRTKIRAERVAKAMERVNIHTETIHGDKDQKNRFQVLDNFRDGKNQI 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D++ARGLD+  V  V N+D+P   ENY+HRIGRTGR    G+A +  ++E+  ++D
Sbjct: 297 LIATDISARGLDVKGVDFVVNYDLPEVPENYVHRIGRTGRGTSRGRAVSFCSEEEKAYLD 356

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           AI++ I K +D +  +  +    +       ++     N   Q + G  ++K
Sbjct: 357 AIQEYIGKPIDVMEINKGAYEETIVFSQANPYDWKSLMNEARQDNNGKRKKK 408


>gi|251778083|ref|ZP_04821003.1| cold-shock deAd box protein a [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243082398|gb|EES48288.1| cold-shock deAd box protein a [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 367

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 129/370 (34%), Positives = 204/370 (55%), Gaps = 6/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LG++  +V  +   G   PT IQ ++IP +L   DV G A+TGTGKT +F+LP+ 
Sbjct: 1   MNFKSLGINENIVNILNKNGIKTPTAIQEESIPKILSGKDVIGEAKTGTGKTLAFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          + LIL PTRELA Q+ +  +K   N ++ +    GG    +Q KKL+
Sbjct: 61  QNI---SPDTNGTQVLILSPTRELAIQITEETKKLNVNNDINILAAYGGKDIGSQLKKLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH +R  + ++ ++ +VIDEAD+ML MGF   I+ I  +     QT
Sbjct: 118 HNVHLVIATPGRLLDHIDRKTIDLSKLKTIVIDEADQMLLMGFKNDIEKIMKVASKKHQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  +++K++  ++ +P  I++ +P+   + I            +          
Sbjct: 178 LCFSATMDSQVKKLAYRYMIDPLFIDIKSPTIAVDKI---KQQVVETTDRWKQDSLCATL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIFC  K+    L  +L ++G +   IH ++ Q  R +I+ +F+   IQ ++
Sbjct: 235 QEDNPFMAIIFCRTKRRADVLEIALHQKGLNCQKIHSDVPQAKRERIMKSFRNADIQYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  V H++N+D P   E+YIHRIGRTGRAG  G     VA +D   ++AI
Sbjct: 295 ATDVAARGIDISGVSHIYNYDTPETPESYIHRIGRTGRAGEDGYTCMFVAPKDSNLLNAI 354

Query: 361 EKLIEKKVDW 370
           E  +   +  
Sbjct: 355 ETKLGFTIPR 364


>gi|198437555|ref|XP_002123307.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
           [Ciona intestinalis]
          Length = 461

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 117/385 (30%), Positives = 190/385 (49%), Gaps = 15/385 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  L  +++  + + G+ KP+PIQ ++IP+ L   DV   A+ GTGK+ ++++PML
Sbjct: 74  VEFEDFCLKRELLMGIFEKGWEKPSPIQEESIPIALSGRDVLARAKNGTGKSGAYLIPML 133

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKL 119
              +         + L+L PTRELA Q +    +  ++     V +  GG        +L
Sbjct: 134 GRCDLN---KDHIQALVLVPTRELALQTSQIAIELSRHMGALNVMVTTGGTNLRDDIMRL 190

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E    +++ TPGRILD  N+    +++  ++V+DEAD++L   F   + NI + +P +RQ
Sbjct: 191 ENSVHIIVATPGRILDLINKRIAKVDHCNMIVLDEADKLLSQDFKQMMDNIVTQLPVSRQ 250

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT    ++     F+    +           T++           KK       L
Sbjct: 251 ILLFSATFPITVKD----FMLKHMKKPYEINLMEELTLKGVSQFYAYVEEKKKVHCLNTL 306

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F++G  + +
Sbjct: 307 FSKLQINQSIIFCNSTHRVELLAKKITELGYSCFYIHARMKQEYRNRVFHDFRQGMCRNL 366

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V SDL  RG+DI  V  V NFD P   E Y+HRIGR+GR G  G A  L+  +D   +  
Sbjct: 367 VCSDLFTRGIDIQAVNVVINFDFPKMPETYLHRIGRSGRYGHLGLAINLITYDDRFSLAR 426

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE       + L  D+  + P ++K
Sbjct: 427 IE-------EELKTDIKPIPPVIDK 444


>gi|327481375|gb|AEA84685.1| ATP-dependent RNA helicase SrmB [Pseudomonas stutzeri DSM 4166]
          Length = 443

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 131/368 (35%), Positives = 194/368 (52%), Gaps = 1/368 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L  +++ AV +  +V+PTP+Q+  IP  L+  D+   AQTG+GKTA+FVLPML  
Sbjct: 2   FDQFALHERLLKAVAELKFVEPTPVQVAAIPPALEGRDLRVTAQTGSGKTAAFVLPMLNR 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L          R LIL PTRELA Q     E++ +   +   L+ GG  F+ Q   L + 
Sbjct: 62  LIGDAQPRVDVRALILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+++H N G L++ ++E+LVIDEADRMLDMGF   +Q +       +QTLL
Sbjct: 122 PDVLIGTPGRLIEHLNAGNLILKDVEVLVIDEADRMLDMGFAEDMQRLVGECEKRQQTLL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT +                + +     +            A        L   L + 
Sbjct: 182 FSAT-SGGAGLREMVAKVLNDPLHLQLNRVSELNESTRQQIITADDPAHKEKLVHWLLAN 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T +  +IF N +     L   L      V  +HG  DQ+ R   +   K+G ++++VA+
Sbjct: 241 ETYQKAVIFTNTRAQADRLYGHLVAGDIKVFVLHGEKDQKERKLAIERLKQGGVKVLVAT 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + +IE+
Sbjct: 301 DVAARGLDIEGMDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHNDWNLMSSIER 360

Query: 363 LIEKKVDW 370
            ++++ + 
Sbjct: 361 YLKQRFEK 368


>gi|319893030|ref|YP_004149905.1| Cold-shock DEAD-box protein A [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162726|gb|ADV06269.1| Cold-shock DEAD-box protein A [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323463915|gb|ADX76068.1| DEAD-box ATP dependent RNA helicase, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 495

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 138/441 (31%), Positives = 224/441 (50%), Gaps = 14/441 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+S +    +   G+ +PTPIQ  +IP  L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   KFTELGVSERTAETLEAMGFTEPTPIQKDSIPFALENIDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +          R LIL PTRELA QVA+   ++ +   + V  + GG+P + Q K L+R
Sbjct: 63  KVVG----KEGVRALILAPTRELAMQVAEQLREFSRGQKVQVVTVFGGMPIDRQIKSLKR 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L    IE L++DEAD M++MGFI  ++ I   +P   +  
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKPQQIETLILDEADEMMNMGFIDDMRYIMDKLPSENRQT 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          RI     +  ++     +     +  K           
Sbjct: 179 MLFSATMPKAIQELVQKFMKSPRIIKTMNNEISDPQIDEYYTIVKELEKFDTFT--NFLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 237 VHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+HG A T V   ++ +I  IE
Sbjct: 297 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKHGIAVTFVNPIEMDYIRQIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           +   ++       + +L PP  K  +       K+          + R +N + Q     
Sbjct: 357 QTNRRQ-------MRALRPPHRKEVLKAREDEIKSKVQSWMDAAKEPRVENIAKQLLET- 408

Query: 422 LKESEKISKLQQDIQENDADS 442
             ++E ++ L Q++ E++ + 
Sbjct: 409 YDQTELVTALLQELVESNDEV 429


>gi|295086065|emb|CBK67588.1| Superfamily II DNA and RNA helicases [Bacteroides xylanisolvens
           XB1A]
          Length = 641

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 144/412 (34%), Positives = 233/412 (56%), Gaps = 17/412 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP+L
Sbjct: 3   TFEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++    + R+P++LIL PTREL  Q+A +   Y K  +    L + G    ++Q + L
Sbjct: 63  QQIDV---KNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD   R  + ++ I  +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KRGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILADVPQERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+N+L+N K I +   +   E+  +     Y   +K      + +
Sbjct: 180 TLLFSATMSPEIARISKNYLRNAKEITIGRKN---ESTNNVKHVVYTVQAKDKYEALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+
Sbjct: 237 VDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRE 356

Query: 360 IEKLIEKK--VDWLN-------GDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           IE++I KK  V  +          L  +   LEK+ + +   A     I +K
Sbjct: 357 IERIISKKFIVGEMPTAAGICQKQLIKVIDDLEKVKVNEEEIADFMPEIYRK 408


>gi|15221761|ref|NP_175829.1| EIF4A-2; ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|1170505|sp|P41377|IF4A2_ARATH RecName: Full=Eukaryotic initiation factor 4A-2; Short=eIF-4A-2;
           AltName: Full=ATP-dependent RNA helicase eIF4A-2;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 19
 gi|4585969|gb|AAD25605.1|AC005287_7 Eukaryotic Initiation Factor 4A-2 [Arabidopsis thaliana]
 gi|14423372|gb|AAK62368.1|AF386923_1 Eukaryotic Initiation Factor 4A-2 [Arabidopsis thaliana]
 gi|16226681|gb|AAL16231.1|AF428462_1 At1g54270/F20D21_52 [Arabidopsis thaliana]
 gi|16556|emb|CAA46189.1| eukaryotic translation initiation factor 4A-2 [Arabidopsis
           thaliana]
 gi|21593545|gb|AAM65512.1| eukaryotic translation initiation factor 4A, putative [Arabidopsis
           thaliana]
 gi|30725682|gb|AAP37863.1| At1g54270 [Arabidopsis thaliana]
 gi|110740791|dbj|BAE98493.1| Eukaryotic Initiation Factor 4A-2 [Arabidopsis thaliana]
 gi|332194952|gb|AEE33073.1| translation initiation factor 4A-2 [Arabidopsis thaliana]
          Length = 412

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 194/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F      
Sbjct: 40  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC---SG 96

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L++    +   + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 97  VLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQA 156

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 157 GVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 216

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 217 VFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDL--YE 274

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 275 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 334

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V  +D + +  I+
Sbjct: 335 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQ 394

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     V+ L  +++ L
Sbjct: 395 KFYNVVVEELPSNVADL 411


>gi|119963381|ref|YP_948725.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
 gi|119950240|gb|ABM09151.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
          Length = 726

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 141/374 (37%), Positives = 219/374 (58%), Gaps = 7/374 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLG+  +V+ A+ D GY KP+PIQ  TIPL+L+  DV G+AQTGTGKTA+F +P L+ 
Sbjct: 73  FVDLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSR 132

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKK 118
              L       R  + L+L PTRELA QVA+ F  Y K+ +    L + G   +  Q   
Sbjct: 133 LAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAG 192

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RGA V++ TPGR++DH  +G L ++ ++ LV+DEAD ML MGF   ++ I    P TR
Sbjct: 193 LRRGAQVVVGTPGRVIDHIAKGSLDLSELQYLVLDEADEMLRMGFADDVEQIFQQTPETR 252

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q  LFSATM  +++++S+ +L NP  I V + ++T    +  ++     +          
Sbjct: 253 QVALFSATMPGQIRRMSKQYLNNPAEISVKSKTTTGANTKQRYLQVMGPHKLDALTRILE 312

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++  D +   +      +++ +   +   +GF   AI+G+I Q+ R + +   KEG I +
Sbjct: 313 VEEFDGVIAFVRTKMATEDLADKLKA---RGFQAAAINGDIPQQQRERTVDALKEGRIDI 369

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   +   +   + 
Sbjct: 370 LVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLR 429

Query: 359 AIEKLIEKKVDWLN 372
           +IEK   + V+ ++
Sbjct: 430 SIEKATRQPVEQMH 443


>gi|255530578|ref|YP_003090950.1| DEAD/DEAH box helicase domain-containing protein [Pedobacter
           heparinus DSM 2366]
 gi|255343562|gb|ACU02888.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 625

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 222/367 (60%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61
           F+ LG+S  VV AV D G+  PTPIQ ++IP++L+ + D  G+AQTGTGKTA+F LP+L 
Sbjct: 5   FSKLGISDDVVNAVKDLGFENPTPIQEQSIPVLLEGNNDFVGLAQTGTGKTAAFGLPLLE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKLE 120
           +++    +   P+ LIL PTREL  Q+  + + + KN +    + + G      Q +++ 
Sbjct: 65  LIDF---KSNKPQALILCPTRELCLQITSDIKNFSKNTSGANVVAVYGGANIMQQLREIR 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGR+LD   R  +   N++ +V+DEAD ML+MGF   I +I S  P  ++T
Sbjct: 122 NGVQIVVATPGRMLDIIGRKAIDFTNVKYVVLDEADEMLNMGFQEDINDILSTTPDDKKT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E++++++N++ +P  + + T ++      +     Y   ++      + + 
Sbjct: 182 WLFSATMPPEVRRIAKNYMDSPVELTMGTKNTGN---VNIEHEYYIVRARDKYAALKRIV 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     ++FC  K +  ++   L K G++  A+HG++ Q+ R K++  F++  +QL++
Sbjct: 239 DFNPEIFAVVFCKTKLDTQDVAEHLIKDGYNADALHGDLSQQQRDKVMQRFRDRNMQLLI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ +V HV N+ +P+  E+Y HR GRTGRAG+ G +  +V  ++I  I  I
Sbjct: 299 ATDVAARGIDVNNVTHVINYSLPDEIESYTHRSGRTGRAGKTGISICIVNSKEIGKIRQI 358

Query: 361 EKLIEKK 367
           E++I K+
Sbjct: 359 ERIIGKQ 365


>gi|333029481|ref|ZP_08457542.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
 gi|332740078|gb|EGJ70560.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
          Length = 606

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 141/378 (37%), Positives = 229/378 (60%), Gaps = 10/378 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
           +F +LG+S +++ A+ + GY  P P+Q + +P +L + +DV  +AQTGTGKTA+F LP++
Sbjct: 3   NFEELGVSAEILKAITEMGYEHPMPVQEEVVPYLLGENNDVVALAQTGTGKTAAFGLPII 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++      R+P++L+L PTREL  Q+AD+   Y K       + + G    ++Q + L
Sbjct: 63  QKVDV---ENRVPQSLVLCPTRELCLQIADDLYNYSKYIKGLKVIPVYGGSSIDSQIRSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD  NRG + ++ I+ +V+DEAD ML+MGF   I +I   VP  R 
Sbjct: 120 KRGVHIIVATPGRLLDLMNRGTVSLSTIKNVVMDEADEMLNMGFTESINSILQDVPKDRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+N+LQNPK I +   +   E  ++     Y  ++K      + +
Sbjct: 180 TLLFSATMSPEIARISKNYLQNPKEITIGRKN---EGSQNVKHVVYKVHAKDKYAALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  ++    +   L K G++  ++HG + Q  R  ++  F+   IQL+
Sbjct: 237 ADFYPQIYGIIFCRTRRETQEIADLLIKDGYNADSLHGELSQAQRDAVMQKFRMRNIQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLRESGKLRD 356

Query: 360 IEKLIEKKVDWLNGDLSS 377
           IEK+I KK +  NG+L +
Sbjct: 357 IEKIIGKKFE--NGELPT 372


>gi|325268230|ref|ZP_08134863.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           multiformis DSM 16608]
 gi|324989372|gb|EGC21322.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           multiformis DSM 16608]
          Length = 668

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 135/385 (35%), Positives = 221/385 (57%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F +LG+S ++  A+ + G+  P P+Q + IP +L    DV  +AQTGTGKTA+F LP+L
Sbjct: 38  TFEELGVSEEIRRAISELGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLPLL 97

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKL 119
             ++ G    +     +L PTREL  Q+AD+ + +GK      +A + GG   E Q  +L
Sbjct: 98  QRIDTGSKDTQAV---VLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGASIETQIHQL 154

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  +++ TPGR++D  +RGK  ++ +  +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 155 RHGVQIIVATPGRLIDLMHRGKARLDKVTNVVLDEADEMLNMGFQESITEILTGVPEDRN 214

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ ++++V++ +L + K I V + +  AE + H     Y   ++   L  + L
Sbjct: 215 TLLFSATMSRDVERVAKGYLHDYKEIVVGSRNEGAENVNH---IYYMVNARDKYLALKRL 271

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    I+FC  K     +   L K G++  ++HG++ Q+ R   +  F+    Q++
Sbjct: 272 VDFYPKIYAIVFCRTKVETQEIADKLIKDGYNAESLHGDLSQQQRDLTMQKFRSHLTQIL 331

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  ENY HR GRTGRAG+ G + +++   +   +  
Sbjct: 332 VATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKHKVRN 391

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE+ I K  ++++G L +     +K
Sbjct: 392 IEREIGK--EFVDGTLPTPEEICKK 414


>gi|51473847|ref|YP_067604.1| ATP-dependent RNA helicase RhlE [Rickettsia typhi str. Wilmington]
 gi|51460159|gb|AAU04122.1| probable ATP-dependent RNA helicase RhlE [Rickettsia typhi str.
           Wilmington]
          Length = 407

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 133/363 (36%), Positives = 207/363 (57%), Gaps = 9/363 (2%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
            +  LS +++ A+      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP++   
Sbjct: 2   KNFNLSEELIIALETMNITEPTEIQKQSIPVAMSGADILASSQTGSGKTLAYLLPLIDAF 61

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            K +         IL PTRELA Q+     K    Y +  A+LIGG P   Q  +L++  
Sbjct: 62  IKNKTTAL-----ILVPTRELATQIHSTLNKVTIAYKINSAVLIGGEPMFKQFMQLKKNP 116

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            V+I TPGRI++H NR  L + +I I+V+DE DRMLDMG    +++I   +P  RQ L+F
Sbjct: 117 KVIIGTPGRIIEHLNRRSLKIEHIGIIVLDEMDRMLDMGMKEQLEDINKFLPEKRQVLMF 176

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM   +  VS+ +L NP RI V   +  A  I+          S K    +   Q  +
Sbjct: 177 SATMPKHIIAVSQKYLNNPVRIMVGATNKAAAEIKQ----ELMHVSNKEKFSELTKQLGN 232

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
            + + IIF   K++   L   L+ +     AIHG++ Q  R +++ +F++   ++MVA+D
Sbjct: 233 RVGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQSQRARVILSFRKLNHRIMVATD 292

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +D+    AI++L
Sbjct: 293 VAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGAIGHALSFISPDDVVRWRAIDRL 352

Query: 364 IEK 366
           + K
Sbjct: 353 VNK 355


>gi|325859866|ref|ZP_08172996.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
 gi|327312944|ref|YP_004328381.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
 gi|325482792|gb|EGC85795.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
 gi|326946277|gb|AEA22162.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
          Length = 628

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 135/385 (35%), Positives = 221/385 (57%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F +LG+S ++  A+ + G+  P P+Q + IP +L    DV  +AQTGTGKTA+F LP+L
Sbjct: 3   TFEELGVSEEIRRAISELGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKL 119
             ++ G    +     +L PTREL  Q+AD+ + +GK      +A + GG   E Q  +L
Sbjct: 63  QRIDTGSKDTQAV---VLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGASIETQIHQL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  +++ TPGR++D  +RGK  ++ +  +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 RHGVQIIVATPGRLIDLMHRGKARLDKVSNVVLDEADEMLNMGFQESITEILTGVPEDRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ ++++V++ +L + K I V + +  AE + H     Y   ++   L  + L
Sbjct: 180 TLLFSATMSRDVERVAKGYLHDYKEIVVGSRNEGAENVNH---IYYMVNARDKYLALKRL 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    I+FC  K     +   L K G++  ++HG++ Q+ R   +  F+    Q++
Sbjct: 237 VDFYPKIYAIVFCRTKVETQEIADKLIKDGYNAESLHGDLSQQQRDLTMQKFRSHLTQIL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  ENY HR GRTGRAG+ G + +++   +   +  
Sbjct: 297 VATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKHKVRN 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE+ I K  ++++G L +     +K
Sbjct: 357 IEREIGK--EFVDGTLPAPEEICKK 379


>gi|219114457|ref|XP_002176399.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402645|gb|EEC42635.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 575

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 139/388 (35%), Positives = 224/388 (57%), Gaps = 8/388 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F D     ++  A   AG+ +PT IQ +  P+ LQ  D+  +A+TG+GKT  F+LP+ 
Sbjct: 138 MEFKDAPFQERIQQAFAQAGFARPTSIQGQAWPIALQNKDMICVAKTGSGKTCGFLLPVF 197

Query: 61  TILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 + R++    P  L+L PTREL+ Q+ +  +K+G+   +      GG     Q  
Sbjct: 198 HQHLVKQTRIQGFTKPILLVLAPTRELSVQILEEAQKFGRPLGIRSVCCYGGASKHPQIA 257

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ-NITSLVPF 176
            L+RG + +I TPGR+ D     K  ++ ++ LV+DEADRMLDMGF P I+  I ++ P 
Sbjct: 258 ALQRGVECVIATPGRLNDLIEMRKADLSKVQYLVLDEADRMLDMGFEPQIRSIILNIPPE 317

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT   E+Q ++ +FL+NP +I V   ++     +          S+K   L+
Sbjct: 318 NRQTLLFSATWPKEIQALAHDFLKNPIQINVGEVNALVANKDIQQTIVMCSESEKLDKLE 377

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q+L+        I+F  +K +  +L + L + GF+V ++HG+  Q  R +++  FK G +
Sbjct: 378 QILRDLMHG-KIIVFVAKKISCNDLANRLWEDGFAVDSLHGDRPQWERTRVMQAFKGGQL 436

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVP---NRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           ++++A+D+AARGLD+ DVG V N+D+P   N  E+Y+HRIGRTGRAG  GKA+T   + D
Sbjct: 437 RVLIATDVAARGLDVKDVGVVVNYDMPSGVNGVEDYVHRIGRTGRAGNKGKAYTFFTQGD 496

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
            K+   + +++ K    +  +L ++  P
Sbjct: 497 RKNATQLVQVLTKAQQEIPPELQAMARP 524


>gi|71018491|ref|XP_759476.1| hypothetical protein UM03329.1 [Ustilago maydis 521]
 gi|46098964|gb|EAK84197.1| hypothetical protein UM03329.1 [Ustilago maydis 521]
          Length = 534

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 114/376 (30%), Positives = 185/376 (49%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + +AG+ +P+PIQ + IP+ L   D+   A+ GTGKTA++V+P L 
Sbjct: 148 EFEDYFLKRELLMGIFEAGFERPSPIQEEAIPIALTGRDILARAKNGTGKTAAYVIPSLE 207

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   + +++     +L PTRELA Q +   +  GK+  + V +  GG        +L +
Sbjct: 208 KLNTKKNKIQAV---LLVPTRELALQTSQVAKTLGKHLGVEVMVTTGGTTLRDDILRLGQ 264

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G   ++     V+DEAD++L   F P ++ + S +P  RQ +
Sbjct: 265 TVHLLVGTPGRILDLAGKGVADLSQCTTFVMDEADKLLSPEFTPVMEQLLSFLPKERQVM 324

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F                 T+            ++       L S
Sbjct: 325 LFSATFPLIVKD----FKDRNMVKPYEINLMDELTLRGVTQYYAFVEERQKVHCLNTLFS 380

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S    H  + Q  R ++  +F+ G  + +V 
Sbjct: 381 KLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQAHRNRVFHDFRNGACRNLVC 440

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  IE
Sbjct: 441 SDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIE 500

Query: 362 KLIEKKVDWLNGDLSS 377
           + +  ++  +  ++  
Sbjct: 501 QELGTEIQPIPSNIDK 516


>gi|316971006|gb|EFV54849.1| eukaryotic initiation factor 4A [Trichinella spiralis]
          Length = 465

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 127/385 (32%), Positives = 196/385 (50%), Gaps = 12/385 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL  +++  V   G+ KP+ IQ   I    QR DV   AQ+GTGKTA+F + +L 
Sbjct: 86  SFEKMGLREELLRGVFAYGFEKPSVIQQLAIVPCCQRRDVIAQAQSGTGKTATFAIGLLQ 145

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +          + L++ PTRELA Q+       G +  + V   IGG       +KL +
Sbjct: 146 QINTDFND---CQALVMAPTRELAQQIQKVILALGDHMGVKVLTCIGGTSVATNREKLGQ 202

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V + TPGR+LD      L    I+  V+DEAD ML  GF   I  +   +P   Q +
Sbjct: 203 GCHVAVGTPGRVLDMIRGHHLQTKGIKTFVLDEADEMLSRGFKQQIHEVFEFMPADVQVV 262

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM DE+ +V+  F+ NP RI V     T + I   ++    +  K   L    + +
Sbjct: 263 LLSATMPDEVLQVTTKFMNNPVRILVRKEELTLDGIRQFYIEVGREEWKLDTLCD--IYT 320

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   L  + F+V  +HG++ Q+ R  I+  F+ G+ +++++
Sbjct: 321 TLSISKAVIFCNSRQKVEKLARELTDRKFTVTCMHGDMTQQDRDVIMQQFRTGSSRVLIS 380

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHR-------IGRTGRAGRHGKAFTLVAKEDI 354
           +DL ARG+DI  V  V N+D+P+  ENYIHR       IGR+GR GR G A   V + D 
Sbjct: 381 TDLLARGIDIQQVSIVINYDIPHNRENYIHRYEQPAVFIGRSGRFGRVGVAINFVTENDK 440

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLN 379
           + +  IE+     +  +  D+  + 
Sbjct: 441 RMMKDIEEFYHTNIRQMPADIEKVR 465


>gi|269956525|ref|YP_003326314.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305206|gb|ACZ30756.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 712

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 141/404 (34%), Positives = 216/404 (53%), Gaps = 12/404 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   +  AV D G+  P+ IQ + IP +L   D+ G+AQTGTGKTA+F LP+L  
Sbjct: 51  FDTLGLPATLEAAVADLGFTTPSAIQAQAIPALLGGRDITGVAQTGTGKTAAFGLPLLAS 110

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +E  R      + L+L PTRELA QVA+  E +  +      L +  G P+  Q + L  
Sbjct: 111 VEAHRGTRPTVQALVLTPTRELAMQVAEAIESFASHLPDVRVLSVYGGSPYVPQQRALRD 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L++++   LV+DEAD ML MGF   ++ I S  P  RQ  
Sbjct: 171 GVHVVVGTPGRVIDHLERGGLVLDDARFLVLDEADEMLRMGFAEDVEKIFSYAPTQRQVA 230

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++ +++  L +P  I V   SST  ++   +        +        + +
Sbjct: 231 LFSATMPPAIRAIADTHLNDPVEIAVARQSSTVASVHQGYAIVPF---RHKVGALTRILA 287

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   +     +  +L ++G S   I G++ Q+ R KI+   + G + ++VA
Sbjct: 288 TSDADASIVFTRTRSAAEEVGAALIEKGISAATISGDVAQKEREKIVERLRSGALDVLVA 347

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V NFD+P  AE Y+HRIGRTGRAGR G+A + V   +   +  IE
Sbjct: 348 TDVAARGLDVDRIGLVVNFDIPREAEAYVHRIGRTGRAGRTGRAVSFVTPHERGKLKFIE 407

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
             I+  ++ +      +  P    D++ H  AR  +  P ++  
Sbjct: 408 NTIKVSLEEI-----DIPSPR---DVSAHRAARLLDSAPARTQA 443


>gi|198283274|ref|YP_002219595.1| DEAD/DEAH box helicase domain-containing protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667828|ref|YP_002425861.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198247795|gb|ACH83388.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218520041|gb|ACK80627.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 418

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 151/373 (40%), Positives = 223/373 (59%), Gaps = 7/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLS  +  A  + GY  PTPIQ + IP+V+   D+   AQTGTGKTA+F +P+L 
Sbjct: 3   SFESLGLSEPIWRAAAERGYTSPTPIQEQAIPVVMSGVDLLAGAQTGTGKTAAFAMPILH 62

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                           R LIL PTRELAAQV  + + YG+   L   +LIGG+    Q +
Sbjct: 63  KLAVTAGSASRAPSSVRALILVPTRELAAQVEASVQLYGRYLPLRSLVLIGGVKINPQMQ 122

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL R  D+L+ TPGR+LDH  +  + ++++EILV+DEADRMLDMGFI  I+ I +++P  
Sbjct: 123 KLRRSVDILVATPGRLLDHIQQRSVDLSHVEILVLDEADRMLDMGFIRDIRRILAVLPKK 182

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT + E++ +++  L NP  +EV   ++TA+ +     A      ++      
Sbjct: 183 RQNLLFSATFSPEIRGLADGLLNNPTSVEVAARNATADNVAQRVFAVDQDRKRELLSHL- 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               +      ++F   K     L   L + G    AIHG+  Q +R + L+ FKEG +Q
Sbjct: 242 --IEEHQWGQVLVFTRTKHGADRLARHLSQDGMQAMAIHGDKSQGARTRALAEFKEGKVQ 299

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI ++ HV NF++P+  E+Y+HRIGRTGRAG +G+A +LV+ E+ K +
Sbjct: 300 VLVATDIAARGIDISELPHVVNFELPHVPEDYVHRIGRTGRAGNNGQAVSLVSSEERKQL 359

Query: 358 DAIEKLIEKKVDW 370
             +EKL+ +  D 
Sbjct: 360 QDVEKLLRRSFDR 372


>gi|157126121|ref|XP_001654546.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108873390|gb|EAT37615.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 741

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 115/392 (29%), Positives = 203/392 (51%), Gaps = 9/392 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P+++  +   G+ KP+PIQ +  P++L+  D+ GIAQTGTGKT +F+LP    +E     
Sbjct: 332 PELLEEIKKQGFAKPSPIQAQAWPVLLKGEDLIGIAQTGTGKTLAFLLPAFIHIEGQPVP 391

Query: 70  VRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
                  P  L++ PT    A   +      +  ++    L GG     Q  K++ G ++
Sbjct: 392 RGEARGGPNVLVMAPT-RELALQIEKEVFKYQFRDIKAICLYGGGDRRTQINKVKGGVEI 450

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           +I TPGR+ D      + + +I  LV+DEADRMLDMGF P I+ +   +   RQT++ SA
Sbjct: 451 IIATPGRLNDLVAANVIDITSITYLVLDEADRMLDMGFEPQIRKLLLDIRPDRQTIMTSA 510

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           T    +++++++++ NP ++ V T    A       +    +  K   ++   + +    
Sbjct: 511 TWPPGVRRLAQSYMSNPVQVYVGTLDLAATHTVTQQIEVIDEEDKYMRVM-NFVTNMGPS 569

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              IIFC +K    +L       G +  ++HG+ +Q  R + L + K G +++++A+D+A
Sbjct: 570 DKVIIFCGRKTRADDLSSEFVLSGINCTSLHGDREQADREQALEDIKSGDVRVLIATDVA 629

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + +   + D      + K++E
Sbjct: 630 SRGLDIEDISHVVNYDFPRNIEEYVHRVGRTGRAGRSGVSLSFFTRGDWAVASDLIKILE 689

Query: 366 KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           +    +  ++  +    E+    +    R+ +
Sbjct: 690 EADQEVPEEIRQMA---ERFTAKKEREGREKS 718


>gi|289192981|ref|YP_003458922.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus sp.
           FS406-22]
 gi|288939431|gb|ADC70186.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus sp.
           FS406-22]
          Length = 362

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 130/373 (34%), Positives = 215/373 (57%), Gaps = 14/373 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           M+F +L LS  ++ A+ + G+ KPT IQ+K IPL L    ++   A+TG+GKTA+F +P+
Sbjct: 1   MNFNELNLSDNILNAIKNKGFEKPTDIQMKVIPLFLNDKGNIVAQARTGSGKTAAFAIPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + ++            +IL PTRELA QVAD  E    N NL +A + GG     Q  K 
Sbjct: 61  IELVN----ENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQI-KA 115

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            + A++++ TPGRILDH NRG L + N++  ++DEAD ML+MGF+  ++ I +     ++
Sbjct: 116 LKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFVEDVERILNACNRDKR 175

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  E+  +++ +        +   S     I      +Y + ++         
Sbjct: 176 ILLFSATMPREILNLAKKY--------MGDYSFIKAKINANIEQSYIEVNENERFEVLCR 227

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++    G++FC  KK+   L + L   GF   AIHG+++Q  R K++  FK+  I+++
Sbjct: 228 ILKNKDFYGLVFCKTKKDTKELANMLRDIGFKAGAIHGDLNQSQREKVIRLFKQKRIKIL 287

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+ +RG+D+ D+  V N+ +P   E+Y+HRIGRTGRAG+ GKA +++ + + K +  
Sbjct: 288 IATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLKY 347

Query: 360 IEKLIEKKVDWLN 372
           IE++ + K+  L 
Sbjct: 348 IERMTKLKIRKLK 360


>gi|50838814|ref|NP_001002869.1| probable ATP-dependent RNA helicase DDX27 [Danio rerio]
 gi|49618925|gb|AAT68047.1| DEAD box polypeptide 27 [Danio rerio]
          Length = 776

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 152/477 (31%), Positives = 240/477 (50%), Gaps = 18/477 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ LS  ++ A+   G+ +PTPIQ   +P+ L   D+C  A TGTGKTA+F+LP+L
Sbjct: 201 LTFHDMNLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKDICACAATGTGKTAAFMLPVL 260

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L       ++ R L+L PTREL  QV     +  +   ++  L +GG+  ++Q   L 
Sbjct: 261 ERLIYKPRETQVTRVLVLVPTRELGIQVHTVARQLAQFTTISTCLAVGGLDLKSQEAALR 320

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            G DVLI TPGR++DH  N     ++ IEIL++DEADRMLD  F   ++ I  +  + RQ
Sbjct: 321 AGPDVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEIIRMCAYQRQ 380

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM++E++ ++   L+ P RI VN+ +  A  +   FV            +   L
Sbjct: 381 TMLFSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQEFVRIRPNKEGDREAIVAAL 440

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   KK    +   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 441 LTRTFQDHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRRFKDEQIDIL 500

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +PN  ++Y+HR+GRT RAG+ G++ +LV + + K +  
Sbjct: 501 VATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETERKMLKE 560

Query: 360 IEKLIEKKV------DWLNGDLSSLNPPLEK-------IDIAQHNHARKNNPIPQKSTGF 406
           I K  +  V        +      L   LEK       ++  +   A     I       
Sbjct: 561 IVKKAKFPVKARVIPQEVILKFRDLIEKLEKDVYAVLCLEKEEKEMAHSEAQISSAQKRL 620

Query: 407 DRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
            + +      ++     E  K  ++ + +Q+ D   L  RG        K  GK  +
Sbjct: 621 TKSEDEKQLPRTWFQTNEERKKDRMAKALQDFD---LALRGKKKRAQFLKQ-GKRKE 673


>gi|197119152|ref|YP_002139579.1| ATP-dependent RNA helicase RhlB [Geobacter bemidjiensis Bem]
 gi|197088512|gb|ACH39783.1| ATP-dependent RNA helicase RhlB [Geobacter bemidjiensis Bem]
          Length = 482

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 138/417 (33%), Positives = 215/417 (51%), Gaps = 12/417 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +  +V   + + G+ + TPIQ K +PL L   DV G AQTGTGKTA+F++ + 
Sbjct: 1   MKFTELQIPAEVQKGIDETGFTQCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIF 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           T    +        PR LIL PTREL  Q+  + +  GK     +  + GG+ +  Q   
Sbjct: 61  TKLLSQAKTGGEHHPRALILAPTRELVVQIEKDAQALGKYTGFNIQAIYGGVDYMKQRDA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ GAD++I TPGR++D+  +    + ++E LVIDEADRM DMGFI  ++ I   +P   
Sbjct: 121 LKAGADIVIGTPGRLIDYLKQKVYSVKDVEALVIDEADRMFDMGFIADLRFILRRLPPYD 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +      + T   + +   +       +V+       T E      Y    K+   L   
Sbjct: 181 KRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPEQM-TAERVEQVLYHVSRKEKFPLLLG 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +  M+  +IF N K+    L   L    F    I G+++QR RMKIL++FK+GT+ +
Sbjct: 240 LLRKMGMERTMIFVNTKREAEYLQDRLNANEFPGKVISGDVEQRKRMKILADFKDGTLPI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+D+A+RG+ I  V HV N+D+P   E+Y+HRIGRT RAG  G A +   ++   +I+
Sbjct: 300 MIATDVASRGIHIEGVSHVINYDLPQDCEDYVHRIGRTARAGAEGMAISFADEDGAFYIE 359

Query: 359 AIEKLIEKKV--DWLNGDL----SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            IE  I++K+  +W   D+         P  + ++    H R   P  +  +G   R
Sbjct: 360 PIEDFIKQKIPTEWAEDDMFVHDYKRTKPRPRTELP---HGRGGKPGDRGRSGDKGR 413


>gi|312210932|emb|CBX91018.1| hypothetical protein [Leptosphaeria maculans]
          Length = 516

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 134/400 (33%), Positives = 212/400 (53%), Gaps = 7/400 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+  ++  A  +  +  PTPIQ + IPL L+  DV G+A+TG+GKTA+FVLP+L 
Sbjct: 88  TFADLGVREELCDACENLKFTTPTPIQTQAIPLALEGRDVIGLAETGSGKTAAFVLPILQ 147

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    LIL PTRELA Q+A   +  G   N+  A L+GG+    Q   L +
Sbjct: 148 ALLD---KPQALFGLILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSK 204

Query: 122 GADVLICTPGRI-LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+     N     + +++ +V+DEADR+LD+ F P +  I  ++P   + 
Sbjct: 205 RPHIVVATPGRLLDHLENTKGFSLKHLKYMVLDEADRLLDLDFGPVLDKILRVLPRDGRH 264

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSATM+ +++ +    LQNP R+ +++ S   + +            K   L    L
Sbjct: 265 TYLFSATMSSKVESLQRAALQNPVRVSISSSSH--QVVSTLLQRYLFIPHKHKDLYLIHL 322

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +     IIF         +   L   GF    +HG + Q +R+  L+ FK  +  ++
Sbjct: 323 LTDNIGHPTIIFTRTVNETERIAILLRALGFGAIPLHGQLSQSARLGALNKFKTKSRDIL 382

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDIP V  V N D+P+ ++ Y+HR+GRT RAG+ GKAF+ V + D++    
Sbjct: 383 VATDVASRGLDIPAVDLVVNLDLPSDSQTYVHRVGRTARAGKSGKAFSFVTQYDVEIWLR 442

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           IE  + KK++    D       +E +  AQ    R+   I
Sbjct: 443 IEHALGKKIEEEVVDKDEALQYMESVSEAQRVAIREMKDI 482


>gi|223590193|sp|A5DLE0|DBP8_PICGU RecName: Full=ATP-dependent RNA helicase DBP8
 gi|190347673|gb|EDK39993.2| hypothetical protein PGUG_04091 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 433

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 128/440 (29%), Positives = 208/440 (47%), Gaps = 18/440 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLG+S  ++ A+       PT IQ + IP +L   D  G A+TG+GKT +F  PM+
Sbjct: 1   MSFKDLGVSKWLLEALAAMKIRSPTSIQAECIPQILAGRDCIGGAKTGSGKTIAFAAPMM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T   +          L+L PTRELA Q+A+ F   G + N+ VA+++GG     Q  +++
Sbjct: 61  TKWSE---DPFGIYGLVLTPTRELALQIAEQFLALGASMNIKVAVVVGGEDMVKQALEIQ 117

Query: 121 RGADVLICTPGRILDHFNRGKLL------MNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           +    +I TPGR+ DH                  +L   +       G            
Sbjct: 118 KSPHFIIATPGRLADHILNSGDDTVGGLKRIKFLVLDEADRLLSNSFGSDLERCFKILPD 177

Query: 175 PFTRQTLLFSATMTDELQ-----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
              RQTLLF+AT+TD ++      V E          V+                   Y 
Sbjct: 178 ASKRQTLLFTATVTDAVRALKDKPVPEGKKPVFIHEIVSKDQVAIPATLTISYVFVPSYV 237

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  L   L+  +    + I+F N+      L  +L K    V ++H  + Q  R   L 
Sbjct: 238 KEAYLHNILVSPKYEKASAIVFVNRTYTAEILRRTLRKLDIRVASLHSEMPQSERTNSLH 297

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+ G  ++++A+D+A+RGLDIP+V  V N D+P   ++YIHR+GRT RAG+ G + ++V
Sbjct: 298 RFRAGAARVLIATDVASRGLDIPNVELVVNQDIPADPDDYIHRVGRTARAGKKGGSVSIV 357

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           +++D++ I AIE  I KK+D L  +++      E + I     A++ +    +  GF  +
Sbjct: 358 SEKDVERILAIENHINKKMDLLE-EVNDDKIIKESLSIV--TAAKRESVADMEKEGFGEK 414

Query: 410 KKNYSSQKSHIPLKESEKIS 429
           +K  + +K     ++S+K  
Sbjct: 415 RK-INKRKREERTRDSKKRK 433


>gi|198244929|ref|YP_002217852.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|226739544|sp|B5FN74|RHLB_SALDC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|197939445|gb|ACH76778.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326625639|gb|EGE31984.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 421

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 137/413 (33%), Positives = 207/413 (50%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P+VV A+    +   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPQVVEALEKKRFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 AQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARK-NNPIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIESYIGHSIPVSKYNPEALMNDLPKPLRLTRSRPGNGPRRAGAPRNRRRSG 421


>gi|168037666|ref|XP_001771324.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677413|gb|EDQ63884.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 413

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 194/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  TFDVMDLHENLLRGIYAYGFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    ++   + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 101 QLDY---QLLECQALVLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTSVREDQRILQA 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I+  V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVYDMLRRNALRADAIKCFVLDEADEMLSRGFKDQIYDIFQLLPQKLQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P +I V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVKILVKRDELTLEGIKQFYVNVDREEWKLDTLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFINTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLQDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ L  +++ L
Sbjct: 396 RFYNTVIEELPSNVADL 412


>gi|325187582|emb|CCA22119.1| predicted protein putative [Albugo laibachii Nc14]
 gi|325188860|emb|CCA23389.1| unknown putative [Albugo laibachii Nc14]
          Length = 417

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 110/375 (29%), Positives = 185/375 (49%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+  P+PIQ + +P++L   +V   A+ GTGKTA+F++P   
Sbjct: 44  EFEDYFLKRELLMGIFEKGFEHPSPIQEEAVPIILAGRNVMARAKNGTGKTAAFIIP--- 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            LEK     +  + LIL PTRELA Q +   ++ GK+  +   +  GG   +    +L  
Sbjct: 101 CLEKTETSKKHIQVLILVPTRELALQTSAIVKEIGKHMGVECMVSTGGTSLKDDIMRLYN 160

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRI+D  N+G   ++N   +++DEAD++L   F P ++ + +     RQ  
Sbjct: 161 TVHILVGTPGRIMDLANKGVADLSNCSTVIMDEADKLLSPEFQPLLEQLLNHTAKKRQIC 220

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F                 T++           ++       L S
Sbjct: 221 LFSATFPVTVKA----FKDRFIENPYEINLMDELTLKGVSQFYAFVEERQKVHCLNTLFS 276

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++   F+ G  + +V 
Sbjct: 277 KLDINQSIIFCNSVNRVELLAKKVTELGYSCFYIHAKMSQAHRNRVFHEFRNGATRHLVC 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A +++  +D  ++  IE
Sbjct: 337 SDLFTRGIDIQTVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAISMITYDDRFNLYRIE 396

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 397 QELGTEIRPIPPIID 411


>gi|50289935|ref|XP_447399.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661253|sp|Q6FQU5|DHH1_CANGA RecName: Full=ATP-dependent RNA helicase DHH1
 gi|49526709|emb|CAG60336.1| unnamed protein product [Candida glabrata]
          Length = 507

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 113/376 (30%), Positives = 186/376 (49%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L  +++  + +AG+ KP+PIQ + IP+ +   D+   A+ GTGKTA+FV+P L 
Sbjct: 32  SFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    ++   + LI+ PTRELA Q +      G++  ++  +  GG        +L  
Sbjct: 92  KIKP---KLNKIQALIMVPTRELALQTSQVIRTLGRHCGVSCMVTTGGTNLRDDILRLNE 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL+ TPGR+LD  +R    ++   + V+DEAD+ML   F   I+ + + +P   Q+L
Sbjct: 149 TVHVLVGTPGRVLDLASRKVADLSECSLFVMDEADKMLSRDFKTIIEQVLTFLPKAHQSL 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++    F+                T++           ++       L S
Sbjct: 209 LFSATFPLTVKE----FMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFS 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   +   G+S    H  + Q+ R K+  +F++G ++ +V 
Sbjct: 265 KLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQDRNKVFHDFRQGKVRTLVC 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+   D  ++  IE
Sbjct: 325 SDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIE 384

Query: 362 KLIEKKVDWLNGDLSS 377
           + +  ++  +   +  
Sbjct: 385 QELGTEIAAIPATIDK 400


>gi|327438469|dbj|BAK14834.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 517

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 138/370 (37%), Positives = 216/370 (58%), Gaps = 6/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L +S   + ++   G+ + TPIQ  T+   +   DV G AQTGTGKTA+F +P++ 
Sbjct: 3   NFSELNISESTLRSIKRMGFEEATPIQEGTVTFAMAGRDVLGQAQTGTGKTAAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +    + L++ PTRELA QV++   K G +  + +  + GG     Q + L+ 
Sbjct: 63  KIDP---KNPNIQALVIAPTRELAIQVSEELYKLGYDKRVKLLSVYGGQEIGRQIRALKN 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI DH NR  L ++ ++ LV+DEAD ML+MGFI  I  I   VP  RQTL
Sbjct: 120 KPQIIVGTPGRIQDHINRRTLRLDEVQTLVLDEADEMLNMGFIDDINAILENVPSDRQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K++E F+++P+ +++     T E IE           ++       L  
Sbjct: 180 LFSATMPPAIRKIAETFMKDPEIVKIKAKELTMENIEQ---FFVKATEREKFDALSRLLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  IIF   K+ V  L  +L  +GF    IHG++ Q  R+ +L  FKEG I +++A
Sbjct: 237 SQKPELAIIFGRTKRRVDELSQALGLRGFLAEGIHGDLSQAKRISVLRQFKEGKIDILIA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +E
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGVAVTFVTPREMGYLRIVE 356

Query: 362 KLIEKKVDWL 371
           +  +K++  L
Sbjct: 357 ETTKKRMTPL 366


>gi|15604513|ref|NP_221031.1| putative ATP-dependent RNA helicase RHLE (rhlE) [Rickettsia
           prowazekii str. Madrid E]
 gi|3861207|emb|CAA15107.1| PUTATIVE ATP-DEPENDENT RNA HELICASE RHLE (rhlE) [Rickettsia
           prowazekii]
 gi|292572297|gb|ADE30212.1| ATP-dependent RNA helicase RhlE [Rickettsia prowazekii Rp22]
          Length = 407

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 9/363 (2%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
            +  LS +++ A+      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP++   
Sbjct: 2   KNFNLSKELIIALETMNITEPTEIQKQSIPVAMSGADILASSQTGSGKTLAYLLPLIDAF 61

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            K +         IL PTRELA Q+     K    Y +  A+LIGG P   Q  +L++  
Sbjct: 62  IKNKTTAL-----ILVPTRELATQIHSTLNKVTTAYKMNSAVLIGGEPMFKQFMQLKKNP 116

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            V+I TPGRI++H NR  L + +I I+V+DE DRMLDMG    ++ I   +P  RQ L+F
Sbjct: 117 KVIIGTPGRIIEHLNRRSLKIEHIGIIVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMF 176

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM   +  VS+ +L NP RI V   +  A  I+          S K    +   Q  +
Sbjct: 177 SATMPKHIIAVSQKYLNNPVRIMVGATNKAAAEIKQ----ELMHVSNKEKFSELTKQLGN 232

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
            + + IIF   K++   L   L+ +     AIHG++ Q  R +++ +F++   ++MVA+D
Sbjct: 233 RVGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQSQRERVILSFRKLNHRIMVATD 292

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +D+    AI++L
Sbjct: 293 VAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGAIGHALSFISPDDVVRWRAIDRL 352

Query: 364 IEK 366
           + K
Sbjct: 353 VNK 355


>gi|302886563|ref|XP_003042171.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256723080|gb|EEU36458.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 490

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 139/407 (34%), Positives = 216/407 (53%), Gaps = 7/407 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++  +  A     Y  PTPIQ K+IP+ LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 66  TFKDLGVNDALCEACEALNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQ 125

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    L+L PTRELA Q+   FE  G   +L  A+++GG+    Q   L +
Sbjct: 126 ALLD---KPQPLFGLVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALGK 182

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR++DH  + K      ++ L++DEADR+LDM F P I  I   +P  R+T
Sbjct: 183 KPHIIVATPGRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFIPRERRT 242

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT++ +++ +    L++P R+ +++      +             K        L 
Sbjct: 243 YLFSATLSSKIESLQRASLRDPVRVSISSNKYQTVSTLIQHYMFIPFPQKDTY--LVYLV 300

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++ T K+ I+F         +   L   GF    +HG + Q SR+  L+ F+ GT  ++V
Sbjct: 301 NEHTGKSTIVFTRTVWETQRVAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGTRDILV 360

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V N+D+P  ++ YIHR+GRT RAG+ G A  LV + D++    I
Sbjct: 361 ATDVAARGLDIPKVDVVLNYDMPQDSKTYIHRVGRTARAGKSGVAINLVTQYDLEIYARI 420

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           E  + KK+     +   +     +I  AQ  HAR       ++ G  
Sbjct: 421 EAALGKKLTEYPSEKEEVMTFQSRIQEAQ-RHARIEMKSMSEAKGSK 466


>gi|299146922|ref|ZP_07039989.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_23]
 gi|298514807|gb|EFI38689.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_23]
          Length = 644

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 144/412 (34%), Positives = 233/412 (56%), Gaps = 17/412 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP+L
Sbjct: 3   TFEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++    + R+P++LIL PTREL  Q+A +   Y K  +    L + G    ++Q + L
Sbjct: 63  QQVDV---KNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD   R  + ++ I  +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KRGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILADVPQERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+N+L+N K I +   +   E+  +     Y   +K      + +
Sbjct: 180 TLLFSATMSPEIARISKNYLRNAKEITIGRKN---ESTNNVKHVVYTVQAKDKYEALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+
Sbjct: 237 VDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRE 356

Query: 360 IEKLIEKK--VDWLN-------GDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           IE++I KK  V  +          L  +   LEK+ + +   A     I +K
Sbjct: 357 IERIISKKFIVGEMPTAAGICQKQLIKVIDDLEKVKVNEEEIADFMPEIYRK 408


>gi|260172628|ref|ZP_05759040.1| ATP-dependent RNA helicase [Bacteroides sp. D2]
 gi|315920918|ref|ZP_07917158.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694793|gb|EFS31628.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 644

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 144/412 (34%), Positives = 233/412 (56%), Gaps = 17/412 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP+L
Sbjct: 3   TFEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++    + R+P++LIL PTREL  Q+A +   Y K  +    L + G    ++Q + L
Sbjct: 63  QQVDV---KNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD   R  + ++ I  +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KRGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILADVPQERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+N+L+N K I +   +   E+  +     Y   +K      + +
Sbjct: 180 TLLFSATMSPEIARISKNYLRNAKEITIGRKN---ESTNNVKHVVYTVQAKDKYEALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+
Sbjct: 237 VDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRE 356

Query: 360 IEKLIEKK--VDWLN-------GDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           IE++I KK  V  +          L  +   LEK+ + +   A     I +K
Sbjct: 357 IERIISKKFIVGEMPTAAGICQKQLIKVIDDLEKVKVNEEEIADFMPEIYRK 408


>gi|261878837|ref|ZP_06005264.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           bergensis DSM 17361]
 gi|270334579|gb|EFA45365.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           bergensis DSM 17361]
          Length = 632

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 141/388 (36%), Positives = 221/388 (56%), Gaps = 10/388 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+S ++  A+ + G+V P P+Q + IP +L Q +DV  +AQTGTGKTA+F +P+L
Sbjct: 3   TFEELGVSEEIRRAIDELGFVNPMPVQEEVIPYLLGQGNDVIALAQTGTGKTAAFGIPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
              +  +   +    LIL PTREL  Q+AD+   + K  +    L + G    EAQ + L
Sbjct: 63  QRTDPTKKETQA---LILSPTRELCLQIADDLNAFAKYMDGMHILPVYGGASIEAQIRSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  +++ TPGR++D  NRG   ++N+  +V+DEAD ML+MGF   I  +   VP  R 
Sbjct: 120 RHGVQIIVATPGRLIDLMNRGVAKLDNVSNVVLDEADEMLNMGFTDSINAVFEGVPRDRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E++K+++++L + K I V + +  AE + H     Y   +K   L  + +
Sbjct: 180 TLLFSATMGKEIEKIAKSYLNDYKEIVVGSRNEGAENVNH---VYYMVNAKDKYLALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GI+FC  K     +   L K G++  A+HG++ Q+ R   +  F++   QL+
Sbjct: 237 VDYYPNIYGIVFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRKHITQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   + +
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSIAIIHTREKHKVRS 356

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKI 385
           IEK+I K+   D L          L K+
Sbjct: 357 IEKIIGKEFVDDELPAPEEICKKQLYKM 384


>gi|170039965|ref|XP_001847786.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167863566|gb|EDS26949.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 942

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 143/459 (31%), Positives = 235/459 (51%), Gaps = 24/459 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G++ K    +   G+ KPTPIQ + IP V+   D+ GIA+TG+GKT +F+LPM  
Sbjct: 282 TWAHCGVTRKEFEVLRKLGFEKPTPIQCQAIPAVMSGRDLIGIAKTGSGKTLAFILPMFR 341

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P  +I+ PTREL  Q+  + +K+ K+ NL    + GG     Q  +L
Sbjct: 342 HVLDQPPLEEAEGPIAIIMSPTRELCMQIGKDIKKFAKSLNLRAVCVYGGTGISEQIAEL 401

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   +  
Sbjct: 402 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNIRP 461

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   L+ P  I+V   S   +           +   K   L 
Sbjct: 462 DRQTVMFSATFPRQMEALARRILKKPVEIQVGGRSVVCKE--VEQHVVVLEEDAKFFKLL 519

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL     + + I+F ++++N   L   L K  +   ++HG IDQ  R   + +FK+G +
Sbjct: 520 ELLGLYQELGSIIVFVDKQENADILLKDLMKASYPCMSLHGGIDQFDRDSTIIDFKQGRV 579

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  E  ++
Sbjct: 580 KLLIATSVAARGLDVKQLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAWTFLTHEQGRY 639

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI-----------PQKSTG 405
              I + +E     +  DL  L    E     Q    +K +              Q++  
Sbjct: 640 SGDIIRALELSGGTIPDDLRQL---WETYKTTQEEQGKKVHTGGGFSGKGFKFDEQEAAA 696

Query: 406 FDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLG 444
            + RKK    QK+ + L++S+    L+QDI ++      
Sbjct: 697 VNERKK---MQKAALGLQDSDDDEDLEQDIDQHIESMFA 732


>gi|118462257|ref|YP_880643.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium avium 104]
 gi|118163544|gb|ABK64441.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium avium 104]
          Length = 566

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 139/370 (37%), Positives = 209/370 (56%), Gaps = 7/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL + P V+ A+ D GY  PT IQ  TIP ++   DV G+AQTGTGKTA+F +P+L+
Sbjct: 14  TFADLQIHPSVLRAIADVGYETPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILS 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-E 120
            ++      +    L+L PTRELA QVA+ F +YG +      L I G    A      +
Sbjct: 74  KIDVASTATQ---ALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYAVQLAGLK 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  RG L +++++ LV+DEAD ML MGF   +  I S  P  +Q 
Sbjct: 131 RGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQV 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++K++  +L +P  +     ++TAE I   ++                ++
Sbjct: 191 ALFSATMPPAIRKLTAKYLHDPLEVSTKAKTTTAENISQRYIQVAGPRKMDALTRVLEVE 250

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + M   +      + V     +   +GFS  AI+G+I Q  R + ++  K+G I ++V
Sbjct: 251 PFEAMIVFVRTKQATEEVAERLRA---RGFSAAAINGDIPQGQRERTVAALKDGGIDILV 307

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  +   + AI
Sbjct: 308 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLKAI 367

Query: 361 EKLIEKKVDW 370
           EK   + +  
Sbjct: 368 EKATRQPLTE 377


>gi|73965227|ref|XP_861717.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 9 [Canis
           familiaris]
          Length = 620

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 130/447 (29%), Positives = 218/447 (48%), Gaps = 12/447 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 154 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 213

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 214 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393

Query: 298 LMVASDL------AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +++A+D+        + +++ DV  V N+D PN +E+YIHRIGRT R+ + G A+T    
Sbjct: 394 ILIATDVASRGLAFYKLVNVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTP 453

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDR 408
            +IK +  +  ++ +    +N  L  L                  R++     K  GF+ 
Sbjct: 454 NNIKQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNT 513

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDI 435
            +   +  + +  L + +  +K Q  +
Sbjct: 514 FRDRENYDRGYSSLLKRDFGAKTQNGV 540


>gi|239946654|ref|ZP_04698407.1| ATP-dependent RNA helicase RhlE [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239920930|gb|EER20954.1| ATP-dependent RNA helicase RhlE [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 410

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 140/422 (33%), Positives = 224/422 (53%), Gaps = 15/422 (3%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
            +  LS +++ A+      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP++   
Sbjct: 2   KNFNLSEELIIALETMNITEPTEIQKQSIPVAIAGSDILASSQTGSGKTLAYLLPLIDSF 61

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            K +         IL PTRELA Q+     K    Y +  A+LIGG P   Q  +L++  
Sbjct: 62  IKNKTTAL-----ILVPTRELATQIHSTLNKVTTPYKINSAVLIGGEPMPKQFMQLKKNP 116

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG    ++ I   +P  RQ L+F
Sbjct: 117 KVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEGINKFLPEKRQVLMF 176

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM   +  +S+ +L NP RI V   +  A  I+          S K    +   Q  +
Sbjct: 177 SATMPKHIIALSQKYLNNPVRITVGATNKAAAEIKQ----ESLHISDKEKFSELTKQLGN 232

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
              + IIF   K++   L   L+ +     AIHG++ Q  R +++ +F++   ++MVA+D
Sbjct: 233 REGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQHQRERVILSFRKSNHRIMVATD 292

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +D+    AI++L
Sbjct: 293 VAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGYALSFISPDDVIRWRAIDRL 352

Query: 364 IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLK 423
           + K      G+ +  +      +  + +  ++     +K   FD  +K      S+   +
Sbjct: 353 VNK------GESTPRSEFRSDKNNRKRSFGKRAGGDGKKFNSFDSSRKRTFDGNSYGNKR 406

Query: 424 ES 425
           + 
Sbjct: 407 KK 408


>gi|157826077|ref|YP_001493797.1| ATP-dependent RNA helicase RhlE [Rickettsia akari str. Hartford]
 gi|157800035|gb|ABV75289.1| ATP-dependent RNA helicase RhlE [Rickettsia akari str. Hartford]
          Length = 410

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 136/363 (37%), Positives = 206/363 (56%), Gaps = 9/363 (2%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
            +  LS +++ A+      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP++   
Sbjct: 2   KNFNLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLIDSF 61

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            K +         IL PTRELA Q+     K   +Y +  A+LIGG P   Q  +L++  
Sbjct: 62  IKNKTTAL-----ILVPTRELATQIHSTLNKVTTSYKMNSAVLIGGEPMHKQFMQLKKNP 116

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
             +I TPGRI+DH NRG L ++ I I V+DE DRMLDMG    ++ I   +P  RQ L+F
Sbjct: 117 KAIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMF 176

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM   +  VS+ +L NP RI V   +  A  I+          S K    +   Q  +
Sbjct: 177 SATMPKHIIVVSQKYLNNPVRITVGAANKAAAEIKQ----ESIHVSDKEKFSELTKQLGN 232

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
              + IIF   K++   L   L+ +     AIHG++ QR R +++ +F++   ++MVA+D
Sbjct: 233 REGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQRQRERVILSFRKSNHRIMVATD 292

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +DI    AI++L
Sbjct: 293 VAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDIIRWRAIDRL 352

Query: 364 IEK 366
           + K
Sbjct: 353 VNK 355


>gi|260591877|ref|ZP_05857335.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           veroralis F0319]
 gi|260536161|gb|EEX18778.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           veroralis F0319]
          Length = 657

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 135/385 (35%), Positives = 221/385 (57%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F +LG+S ++  A+ + G+  P P+Q + IP +L    DV  +AQTGTGKTA+F LP+L
Sbjct: 27  TFEELGVSEEIRRAISELGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLPLL 86

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKL 119
             ++      +     +L PTREL  Q+AD+ + +GK      +A + GG   + Q  +L
Sbjct: 87  QRIDTSSKSTQAI---VLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGASIDTQIHQL 143

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  +++ TPGR++D  +RGK  ++ +  +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 144 RHGVQIIVATPGRLIDLMHRGKARLDQVRNVVLDEADEMLNMGFQESITEILTGVPEDRN 203

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ +++KV++ +L + K I V + +  AE++ H     Y   ++   L  + L
Sbjct: 204 TLLFSATMSRDVEKVAKGYLHDYKEIVVGSRNEGAESVNH---IYYMVNARDKYLALKRL 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    I+FC  K     +   L K G++  ++HG++ Q+ R   +  F+    Q++
Sbjct: 261 VDFYPKIYAIVFCRTKVETQEIADKLIKDGYNAESLHGDLSQQQRDLTMQKFRSHLTQIL 320

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  ENY HR GRTGRAG+ G + +++   +   +  
Sbjct: 321 VATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKYKVRN 380

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE+ I K  ++++G L S     +K
Sbjct: 381 IEREIGK--EFIDGTLPSPEEICKK 403


>gi|195155425|ref|XP_002018605.1| GL25891 [Drosophila persimilis]
 gi|194114758|gb|EDW36801.1| GL25891 [Drosophila persimilis]
          Length = 518

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 135/391 (34%), Positives = 220/391 (56%), Gaps = 7/391 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLGL+  +  A  +  +  P+ IQ + IP+ LQ  DV G+A+TG+GKT +F LP+L
Sbjct: 69  LTWKDLGLNDTLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 128

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      L+L PTRELA Q+ + FE  G    +   +++GG+   AQ  +L 
Sbjct: 129 HALLESPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 185

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGR++DH    K      I+ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 186 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 245

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L++P ++EV+    T E ++  ++       K   +    +
Sbjct: 246 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPV---KYKDVYLVHI 302

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK     ++
Sbjct: 303 LNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 362

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T+V++ DI+    
Sbjct: 363 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITIVSQYDIELYQR 422

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           IE L+ K++     +   +    E++  AQ 
Sbjct: 423 IEHLLGKQLPLYKCEEDEVMALQERVAEAQR 453


>gi|125987477|ref|XP_001357501.1| GA21647 [Drosophila pseudoobscura pseudoobscura]
 gi|54645833|gb|EAL34571.1| GA21647 [Drosophila pseudoobscura pseudoobscura]
          Length = 518

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 135/391 (34%), Positives = 220/391 (56%), Gaps = 7/391 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + + DLGL+  +  A  +  +  P+ IQ + IP+ LQ  DV G+A+TG+GKT +F LP+L
Sbjct: 69  LTWKDLGLNDTLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 128

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   R      L+L PTRELA Q+ + FE  G    +   +++GG+   AQ  +L 
Sbjct: 129 HALLESPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 185

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGR++DH    K      I+ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 186 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 245

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L++P ++EV+    T E ++  ++       K   +    +
Sbjct: 246 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPV---KYKDVYLVHI 302

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK     ++
Sbjct: 303 LNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 362

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T+V++ DI+    
Sbjct: 363 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITIVSQYDIELYQR 422

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           IE L+ K++     +   +    E++  AQ 
Sbjct: 423 IEHLLGKQLPLYKCEEDEVMALQERVAEAQR 453


>gi|184200206|ref|YP_001854413.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila
           DC2201]
 gi|183580436|dbj|BAG28907.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila
           DC2201]
          Length = 719

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 139/393 (35%), Positives = 222/393 (56%), Gaps = 7/393 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+  +V+ A+ + GY  P+PIQ  TIP +L   DV G+AQTGTGKTA+F +P L+
Sbjct: 77  TFAELGVDGRVLAALDEVGYEYPSPIQAATIPALLSGRDVVGLAQTGTGKTAAFAVPALS 136

Query: 62  IL---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNK 117
            L          R  R L+L PTRELA QVA+ F  Y  +      L + G   +  Q  
Sbjct: 137 KLAELSDLHGPQRSTRVLVLAPTRELALQVAEAFGSYATHLEDFTVLPVYGGSSYGPQLA 196

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+RGA V++ TPGR++DH ++G L +++I  +V+DEAD ML MGF   ++ I +  P  
Sbjct: 197 GLKRGAQVVVGTPGRVIDHLSKGSLKLDDIAYVVLDEADEMLRMGFSEDVEKILAQTPVE 256

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +Q  LFSATM   ++++++ +L++P+ I V   ++T       ++     +         
Sbjct: 257 KQVALFSATMPKAIRRIAQQYLRDPQEITVKAKTTTGTNTRQRYMQVMGPHKLDAMTRVL 316

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            ++  D +   I+F   K     +   L+ +G++  AI+G+I Q  R + + + +EG I 
Sbjct: 317 EVEDYDGV---IVFVRTKAATEEIADKLKARGYTAAAINGDIPQNLRERTVDSLREGKID 373

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  +  V N+D+P+  E+Y+HRIGRTGRAGR G+A   +   +   +
Sbjct: 374 ILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRKGEAILFMTPREKYLL 433

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
            AIEK   + V+ +    +       K + AQ 
Sbjct: 434 RAIEKATRQPVEQMRVPTTDEVNQTRKDNFAQQ 466


>gi|269962799|ref|ZP_06177140.1| ATP-dependent RNA helicase, DEAD box family [Vibrio harveyi 1DA3]
 gi|269832489|gb|EEZ86607.1| ATP-dependent RNA helicase, DEAD box family [Vibrio harveyi 1DA3]
          Length = 447

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 123/405 (30%), Positives = 195/405 (48%), Gaps = 9/405 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + K T IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 5   LQFKDLGLDNRLLKNLKHYDFKKATDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 64

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR +IL PTRELA QV           +   AL++GG  F  Q K L
Sbjct: 65  HKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLGGLSYDAALILGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH     L ++ +E L++DEADRMLD+GF P ++ I       R+
Sbjct: 125 RRYPKFIVATPGRLADHLEHRSLFLDGLETLILDEADRMLDLGFAPELRRIHKAAKHRRR 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +              +    S  E  +         +      + + +
Sbjct: 185 QTLMFSATLDHAEVNDIASEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILERV 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  IIF   + +   L + L ++     A+ GN++Q  R  I+S F+    +++
Sbjct: 245 LEEAEYRQVIIFTATRDDTERLTNKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDI  V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D      
Sbjct: 305 VTTDVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKR 364

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKIDIA-QHNHARKNNP 398
           +E  +++ +++     L G    L P   K D   +    +K  P
Sbjct: 365 VETYLQQDLNFSVFEDLKGKFKGLKP--RKPDFRGKKTETKKARP 407


>gi|297569193|ref|YP_003690537.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925108|gb|ADH85918.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 528

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 141/427 (33%), Positives = 224/427 (52%), Gaps = 12/427 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L  +++ A+  +G+   TPIQ + +P  L  HD  G AQTGTGK+A+F++ ++T 
Sbjct: 102 FHDLDLPQELMRAIHASGFQYCTPIQAEILPPTLAGHDAFGKAQTGTGKSAAFLISIITR 161

Query: 63  LEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L +    V      P+ LIL PTRELA Q+  + E+  +   L    + GG  +E Q K 
Sbjct: 162 LLREPDTVPRQLALPKALILAPTRELAIQIHRDAEELTQYSELNCVAVFGGTDYEKQRKM 221

Query: 119 LER-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            E+   D+LI TPGR+LD   +  + +  + +LVIDEADR+LDMGFIP ++ I    P  
Sbjct: 222 FEQAPVDLLIATPGRLLDFARQKVVSLKEVRVLVIDEADRLLDMGFIPDVRRIIQQTPEK 281

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q      + T    +++    Q  K              +      Y   +K+   +  
Sbjct: 282 SQRQTLFFSAT-LNSQIANLSAQWTKDPVTVEIEPEQVASDRVEQRVYMVTAKEKMTVLY 340

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L +   ++  I+FCN++     +   L + G S   + G + Q+ RMK L NFKEG I+
Sbjct: 341 NLITGKQLERVIVFCNRRDVTRRVRERLYRHGISCAMLSGEVSQQQRMKTLDNFKEGKIR 400

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A RGL I  + HV N+++P  AE+Y+HRIGRTGRAG  G + +   +E+  ++
Sbjct: 401 VLVATDVAGRGLHIEGISHVINYNLPEDAEDYVHRIGRTGRAGASGISVSFADEEESFYL 460

Query: 358 DAIEKLIEKKVDWLNGD---LSSLNPPLEK---IDIAQHNHARKNNPIPQKSTGFDRRKK 411
            AIE+ + +K+D +  +   L  L PP++K   +D     +    +  P + +G  RR  
Sbjct: 461 PAIEEYMGRKLDCVYPEDELLIPLPPPVQKAPPVDKNLSGNQGGRSGKPGRKSGPPRRSS 520

Query: 412 NYSSQKS 418
           N    + 
Sbjct: 521 NSGRPRR 527


>gi|169145046|emb|CAQ08925.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
          Length = 652

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 134/381 (35%), Positives = 205/381 (53%), Gaps = 5/381 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 214 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL++  +I V     +A       V    +  K   L+Q + +
Sbjct: 274 LMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 333

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 300 VASDLAARGL--DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +A+D+A+RGL   + DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K  
Sbjct: 394 IATDVASRGLGLYVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 453

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K++E+    +N  L  L
Sbjct: 454 RELIKVLEEANQAINPKLMQL 474


>gi|297610744|ref|NP_001065000.2| Os10g0503700 [Oryza sativa Japonica Group]
 gi|255679537|dbj|BAF26914.2| Os10g0503700 [Oryza sativa Japonica Group]
          Length = 521

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 114/375 (30%), Positives = 190/375 (50%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 148 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 207

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + +IL PTRELA Q +   ++ GK  N+ V +  GG   +    +L +
Sbjct: 208 KIDP---EKNAIQVVILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQ 264

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P I+ +   +P  RQ L
Sbjct: 265 PVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLLAPEFQPSIEQLIHFLPANRQLL 324

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++   E +L  P  I          T++           ++       L  
Sbjct: 325 MFSATFPVTVKDFKEKYLPRPYVI----NLMDELTLKGITQYYAFVEERQKVHCLNTLFL 380

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 381 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 440

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+ I  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 441 TDLFTRGIGIQAVNVVINFDFPKTSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 500

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 501 QELGTEIKTIPPQID 515


>gi|51317205|gb|AAT99858.1| unknown [Diachasmimorpha longicaudata entomopoxvirus]
          Length = 379

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 197/377 (52%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  +GL   ++  +   G+ KP+ IQ K I   +   DV   AQ+GTGKTA++ + +L 
Sbjct: 7   EFDHMGLKKNILKGIYSCGFEKPSTIQQKAIFPCISGKDVIVQAQSGTGKTATYAISVLQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++   + ++    LIL PTRELA Q     +  G         +  G     ++++  +
Sbjct: 67  QIDTSNSNIQA---LILTPTRELALQAQRVLQTIGNYLYNFKCQVCIGGTSIKESQETLK 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            A VLI TPGR++D   R  +    I+I+VIDEAD ML   F+  IQ+I        Q +
Sbjct: 124 KAQVLIGTPGRMIDLLTRKSIDTKAIKIVVIDEADEMLIDNFLDKIQDIFEFFESHVQVI 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+   +   S+ F+++P +I V     T E I   ++       K   L       
Sbjct: 184 LLSATVPSRVINTSQVFMRDPVKILVKNAELTLEGIRQYYINVKKNDFKAETLFDL--YD 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   L  + F+  +IHG++ Q+ R  I+  F++G  +++++
Sbjct: 242 HLSLTQTLIFCNTRRQVDVLMECLTNRNFTASSIHGDMSQQERDFIMKEFRDGKTRILLS 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           ++L ARG+D+  +  V N+D+P+  ENYIHRIGR+GR GR G A   + ++++  +  +E
Sbjct: 302 TNLLARGIDVQQISLVINYDLPHNRENYIHRIGRSGRFGRKGIAINFITEDELPKLAELE 361

Query: 362 KLIEKKVDWLNGDLSSL 378
                K+D +  ++  L
Sbjct: 362 TFYNTKIDEMPENIVDL 378


>gi|326498121|dbj|BAJ94923.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326527983|dbj|BAJ89043.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 495

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 111/375 (29%), Positives = 196/375 (52%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 122 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 181

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++ +  +++    IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 182 KIDQDKNAIQVV---ILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRLYQ 238

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LD   +G  ++ +  +L++DEAD++L   F P ++ +   +P +RQ L
Sbjct: 239 PVHLIVGTPGRVLDLTKKGICILKDCSMLIMDEADKLLSPEFQPSVEQLIRYLPSSRQIL 298

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++   + +L  P  I          T++           ++       L S
Sbjct: 299 MFSATFPVTVKAFKDKYLPKPYVI----NLMDELTLKGITQFYAFVEERQKVHCLNTLFS 354

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 355 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 414

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 415 TDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 474

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 475 QELGTEIKPIPPQID 489


>gi|323137351|ref|ZP_08072429.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
 gi|322397338|gb|EFX99861.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
          Length = 450

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 150/371 (40%), Positives = 220/371 (59%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLGL+  ++ A+   GY  PT IQ + IP +++  D+ GIAQTGTGKTA+F LP+L 
Sbjct: 3   KFSDLGLAEILLRALDREGYETPTSIQAQAIPYLMEGRDLLGIAQTGTGKTAAFALPILN 62

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L   R R         +L PTRELAAQ+AD+F  YG+    +V +++GG+    Q   L
Sbjct: 63  RLAADRRRPAPFTARTLVLAPTRELAAQIADSFRAYGQFMRPSVGVIVGGVSHRPQIDML 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG DVL+ TPGR+LDH   GKL +   E+LV+DEAD MLD+GFI  I+ I + +P  RQ
Sbjct: 123 ARGLDVLVATPGRLLDHIASGKLKLAATEVLVLDEADHMLDLGFIVPIRQIVAKLPKKRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E+  ++E+ LQNP ++ V   ++TAE +            +    +   L
Sbjct: 183 TLLFSATMPKEIAGLAEDMLQNPAQVSVTPVATTAERVAQHVFLVDGGAKR---DMLIEL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +   +   I+F   K+    +   L+  G    AIHGN  Q  R++ L  F++G  +++
Sbjct: 240 MNDADVSRAIVFTRTKRGADRVAEHLDAAGVGAEAIHGNKSQSQRIRALDAFRKGRTRVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV N+++P   E Y+HRIGRT RAG  G+A +L    + + +  
Sbjct: 300 VATDIAARGIDVDGVTHVVNYELPETPEAYVHRIGRTARAGASGRAISLCDNGERQLLRQ 359

Query: 360 IEKLIEKKVDW 370
           IEKL  + + +
Sbjct: 360 IEKLTRQTLAF 370


>gi|313109386|ref|ZP_07795348.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
 gi|310881850|gb|EFQ40444.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
          Length = 449

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 145/372 (38%), Positives = 221/372 (59%), Gaps = 5/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   G+  PTPIQ + IP  L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV  +   YG++  L  A+  GG+    Q  K
Sbjct: 61  QRLTLEGPQVAANSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD + +  +    ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D ++ ++   L++P  IEV+  ++ A+++    V    +   +       
Sbjct: 181 QTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQ 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  +  ++F   +K+V  L   L++QG +  +IHG+  Q +R++ L  FK G + L
Sbjct: 241 ANRW---RQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDL 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLA 357

Query: 359 AIEKLIEKKVDW 370
           AIE LI + +  
Sbjct: 358 AIETLIGQTLQR 369


>gi|307825386|ref|ZP_07655605.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307733561|gb|EFO04419.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 451

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 134/424 (31%), Positives = 217/424 (51%), Gaps = 30/424 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L LS  ++ ++ DAG+   TPIQ + +PL L+  D+ G AQTGTGKTA+F+L     
Sbjct: 11  FSNLELSDSILRSLKDAGFNHCTPIQRQALPLSLRGKDIAGQAQTGTGKTATFLLATFQH 70

Query: 63  LEKG-------------------------RARVRMPRTLILEPTRELAAQVADNFEKYGK 97
           L                              +++ PR +IL PTRELA Q+  +  + GK
Sbjct: 71  LINDAEDDAEAQTNADIETEKTAPNVVAKSKQIKYPRAIILAPTRELAIQIHKDALQLGK 130

Query: 98  NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
           + NL +AL+ GG  ++ Q   L+   D++I TPGRI+D + +    ++N+++ V+DEADR
Sbjct: 131 HLNLKLALIYGGTDYQKQLDSLKSNVDIIIGTPGRIIDFYRQNAFTLDNVKVTVMDEADR 190

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           M D+GFI  I+ +   +P   Q L    + T   +     +        +    +   T 
Sbjct: 191 MFDLGFIKDIRFLLRRMPPPEQRLNMLFSATLSYKVTELAYEHMNN-PVLIRIETEEVTS 249

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
           +    + +   +++   L   + +Q   +  IIF N K+    L  +L   G+   A+ G
Sbjct: 250 KAIQQSAFCPSNEQKIPLLVGILNQHQPQRSIIFVNTKRCAERLDDTLNANGYKTAALSG 309

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q  R ++LS+F+E  I L++A+D+AARGL I DV HV N+D+P   E+Y+HRIGRT 
Sbjct: 310 DVPQDKRQRLLSDFQENKITLLIATDVAARGLHIADVSHVINYDLPQDVEDYVHRIGRTA 369

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG--DL--SSLNPPLEKIDIAQHNHA 393
           R G  G A + + +E    +  IE+ IE+K+  L    DL    + P      I      
Sbjct: 370 RFGASGVAISFICEEYAYSMPDIEEYIEQKIPVLPITDDLLAEVVKPERRPEKIKTEYQG 429

Query: 394 RKNN 397
           ++ N
Sbjct: 430 KRPN 433


>gi|251793198|ref|YP_003007926.1| ATP-dependent RNA helicase RhlB [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534593|gb|ACS97839.1| ATP-dependent RNA helicase RhlB [Aggregatibacter aphrophilus
           NJ8700]
          Length = 433

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 133/405 (32%), Positives = 205/405 (50%), Gaps = 8/405 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P V+ A+   G+   TPIQ  ++P+ LQ  DV G AQTGTGKT +F+  +   
Sbjct: 25  FADLPLHPLVLQALTTKGFDFCTPIQALSLPVTLQGKDVAGQAQTGTGKTIAFLTALFHH 84

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                       PR L+L PTRELA Q+  + + + K      AL  GG  ++ Q K +E
Sbjct: 85  LLTHPTETDKNQPRALVLAPTRELAVQIEHDAQIFLKTTQFKTALAYGGDGYDKQLKAIE 144

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P  +Q 
Sbjct: 145 NGVDVLIGTTGRVIDYVKQGIIRLDRIQVVVLDEADRMFDLGFIRDIRYLLRKCPSPQQR 204

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L    + T   +     F       E    +   +T        +   ++    L   L 
Sbjct: 205 LTMLFSATLSYKVRELAFEDMND-PEYVEIAPEQKTGRQIKEELFYPSNQDKIRLLLTLL 263

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  IIF N K     +   L   G  V  + G++ Q+ R+ +L  F +G + ++V
Sbjct: 264 EEEWPERCIIFANTKHQCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGELDILV 323

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL I +V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   ++   ++ AI
Sbjct: 324 ATDVAARGLHIAEVTHVFNYDLPDDREDYVHRIGRTGRAGESGISISFACEQYAMNLPAI 383

Query: 361 EKLIEKKVDWLNGD----LSSLNPPLE-KIDIAQHNHARKNNPIP 400
           E+ I   +     D    L  +  P   K   + H  +  N   P
Sbjct: 384 EEYIGHSIPVSQYDPNALLQDIPKPYRIKRATSTHRISNNNRRKP 428


>gi|294909743|ref|XP_002777840.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239885802|gb|EER09635.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 625

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 124/383 (32%), Positives = 201/383 (52%), Gaps = 7/383 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  AG+V PTPIQ++  P+ L   D+ GIA+TG+GKT +F+LP +  
Sbjct: 179 FEEACLPDYIMVEIQKAGFVNPTPIQVQGWPVALCGRDMVGIAETGSGKTLAFLLPAVVH 238

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       +   P  L+L PTRELA Q+ +  +++G +  ++     GG+P   Q + L+
Sbjct: 239 INAQPYLQKGDGPIVLVLAPTRELALQIKEECDRFGSSSRISNTCCYGGVPRGPQARMLQ 298

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G ++ I TPGR++D        +  +  LV+DEADRMLDMGF P ++ I S +   RQT
Sbjct: 299 NGVEICIATPGRLIDFLESEVTNLRRVTYLVLDEADRMLDMGFEPQVRKIVSQIRPDRQT 358

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   ++Q+++ +             S  A      FV    +  K   L   +  
Sbjct: 359 LMWSATWPKDVQQLARDLCNEEPVHVTVGRSGHACHNIQQFVEVVEENGKAERLQALMRA 418

Query: 241 S-----QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                        +IF + K+   ++   L + G+   AIHG+  Q  R  +L+ FK G 
Sbjct: 419 VASASGGVWESKALIFTDTKRCADDITRVLRRDGWPALAIHGDKKQTERDWVLAEFKTGR 478

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + +M+A+D+A+RGLD+ DV +V N+D P   E+Y+HRIGRTGRAG HG A++    +  K
Sbjct: 479 MPIMIATDVASRGLDVKDVKYVINYDFPGTIEDYVHRIGRTGRAGAHGTAYSFFTADKAK 538

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
               +  ++ +    +   L  L
Sbjct: 539 LAKPLIGILREAAQPVPEALERL 561


>gi|189053928|dbj|BAG36435.1| unnamed protein product [Homo sapiens]
          Length = 648

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 144/412 (34%), Positives = 221/412 (53%), Gaps = 11/412 (2%)

Query: 2   DFAD-LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F D     P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT  +++P  
Sbjct: 242 TFDDAFQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGF 301

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                    + +   P  L+L PTRELA QV     KY     L    + GG   + Q +
Sbjct: 302 IHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIE 360

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L++G D++I TPGR+ D      + + NI  LV+DEAD+MLDMGF P I  I   V   
Sbjct: 361 ELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPD 420

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++ SAT    + ++++++L+ P  + V T    A +     +    +  K   + Q 
Sbjct: 421 RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHM-QT 479

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            LQS  +    I+F ++K    +L   L     SV ++HG+ +QR R K L NFK G ++
Sbjct: 480 FLQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVR 539

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+DLA+RGLD+ DV HV+NFD P   E Y+HRIGRTGRAGR G + T + + D +  
Sbjct: 540 ILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVA 599

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             +  ++E+    +  +L S+    E      H   R+     ++  G  ++
Sbjct: 600 SELINILERANQSIPEELVSMAERFE-----AHQRKREMERKMERPQGRPKK 646


>gi|157376468|ref|YP_001475068.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157318842|gb|ABV37940.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 429

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 148/432 (34%), Positives = 228/432 (52%), Gaps = 9/432 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L+P ++ A+   GY + T +Q + IP+ L   D+   A+TGTGKTA+F LP++
Sbjct: 1   MKFDALELNPSILEAIDVCGYQQLTQVQSEVIPVALTGVDLMACAETGTGKTAAFALPLI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L      +   R LIL PTRELA QVA+N  +Y +   L    + GG     Q K L 
Sbjct: 61  QRLIFDEVNLGSLRGLILTPTRELAIQVAENISRYCQFTALKTLAVYGGANMNPQRKALN 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGR+ D   +  L +++++ LVIDEADRMLDMGF+  I+ + +LV     T
Sbjct: 121 AGVDILVATPGRLFDFIGQHGLDLSDVKTLVIDEADRMLDMGFVRDIERVKALVAAEHIT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSAT +D+++ +++  LQ+P+ I V    S +          Y    ++ A L   L 
Sbjct: 181 HFFSATYSDDVKALAQKMLQSPQWINVAQSRSASSV----EQEIYLVDKRRKAELLSELV 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  ++F + K++  +L + L+  G      HG+  Q +R + L  FK G ++++V
Sbjct: 237 GRNNWQQVLVFASSKESAEHLQNELKLDGVKSAVFHGDKTQGARNRALEEFKNGMLRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N ++P  AE+YIHRIGRTGRAG  G+A + V   D K ++ I
Sbjct: 297 ATDVAARGLDIQALPLVINLELPFDAEDYIHRIGRTGRAGLKGRAISFVCPSDEKMLEEI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPL-----EKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           E LIE K+         L  PL     E  +  +    R+         G     +    
Sbjct: 357 ETLIELKLPRTVLPGYELGTPLPARYRETQESTKKRVERRKGKPKHGKRGASGDDRADKG 416

Query: 416 QKSHIPLKESEK 427
           + S+   +  +K
Sbjct: 417 KSSYASRRADKK 428


>gi|15599145|ref|NP_252639.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|218889767|ref|YP_002438631.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
 gi|9950138|gb|AAG07337.1|AE004813_4 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|218769990|emb|CAW25752.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
          Length = 449

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 145/372 (38%), Positives = 221/372 (59%), Gaps = 5/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   G+  PTPIQ + IP  L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV  +   YG++  L  A+  GG+    Q  K
Sbjct: 61  QRLTLEGPQVAANSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD + +  +    ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D ++ ++   L++P  IEV+  ++ A+++    V    +   +       
Sbjct: 181 QTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQ 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  +  ++F   +K+V  L   L++QG +  +IHG+  Q +R++ L  FK G + L
Sbjct: 241 ANRW---RQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDL 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLA 357

Query: 359 AIEKLIEKKVDW 370
           AIE LI + +  
Sbjct: 358 AIETLIGQTLQR 369


>gi|8216985|emb|CAB92442.1| DEAD-box protein [Homo sapiens]
 gi|12053019|emb|CAB66685.1| hypothetical protein [Homo sapiens]
 gi|119569155|gb|EAW48770.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Homo sapiens]
          Length = 648

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 144/412 (34%), Positives = 221/412 (53%), Gaps = 11/412 (2%)

Query: 2   DFAD-LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F D     P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT  +++P  
Sbjct: 242 TFDDAFQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGF 301

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                    + +   P  L+L PTRELA QV     KY     L    + GG   + Q +
Sbjct: 302 IHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIE 360

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L++G D++I TPGR+ D      + + NI  LV+DEAD+MLDMGF P I  I   V   
Sbjct: 361 ELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPD 420

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++ SAT    + ++++++L+ P  + V T    A +     +    +  K   + Q 
Sbjct: 421 RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHM-QT 479

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            LQS  +    I+F ++K    +L   L     SV ++HG+ +QR R K L NFK G ++
Sbjct: 480 FLQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVR 539

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+DLA+RGLD+ DV HV+NFD P   E Y+HRIGRTGRAGR G + T + + D +  
Sbjct: 540 ILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVA 599

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             +  ++E+    +  +L S+    E      H   R+     ++  G  ++
Sbjct: 600 SELINILERANQSIPEELVSMAERFE-----AHQRKREMERKMERPQGRPKK 646


>gi|116051990|ref|YP_789167.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587211|gb|ABJ13226.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 449

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 145/372 (38%), Positives = 221/372 (59%), Gaps = 5/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   G+  PTPIQ + IP  L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV  +   YG++  L  A+  GG+    Q  K
Sbjct: 61  QRLTLEGPQVAANSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD + +  +    ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D ++ ++   L++P  IEV+  ++ A+++    V    +   +       
Sbjct: 181 QTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQ 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  +  ++F   +K+V  L   L++QG +  +IHG+  Q +R++ L  FK G + L
Sbjct: 241 ANRW---RQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDL 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI ++  V NFD+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLA 357

Query: 359 AIEKLIEKKVDW 370
           AIE LI + +  
Sbjct: 358 AIETLIGQTLQR 369


>gi|50954992|ref|YP_062280.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951474|gb|AAT89175.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 589

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 140/373 (37%), Positives = 216/373 (57%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   V+  + D GY  P+ IQ  TIPL+L+  DV G+AQTGTGKTA+F LP+L
Sbjct: 17  LTFADLGLDRAVLAVLKDVGYETPSAIQAATIPLLLEGRDVVGLAQTGTGKTAAFALPIL 76

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           + L+  +     P+ L+L PTRELA QVA+ FE Y  +      L +  G  +  Q   L
Sbjct: 77  SRLDLSQKS---PQALVLAPTRELALQVAEAFESYATHLKGVHLLPVYGGQGYGVQLSAL 133

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG  +++ TPGRI+DH ++G L ++ ++ LV+DEAD ML MGF   ++ I +  P  +Q
Sbjct: 134 RRGVHIVVGTPGRIMDHLDKGTLDLSGLKHLVLDEADEMLKMGFAEDVEKILADTPDDKQ 193

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  +++++S+ +L +P+ + V   ++T+      ++                +
Sbjct: 194 VALFSATMPAQIRRISKKYLHDPEEVTVKARTTTSANTTQRYLVVSYSQKVDALTRILEV 253

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++ + M   I+F   K     L   L  +G+S  AI G++ Q  R + +   K G + ++
Sbjct: 254 ENFEAM---IVFVRTKNETETLAERLRARGYSAAAISGDVAQAQRERTVGQLKSGKLDIL 310

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV NFD+P   E+Y+HRIGRTGRAGR G A + V   + + + A
Sbjct: 311 VATDVAARGLDVDRISHVVNFDIPVDTESYVHRIGRTGRAGRSGAAISFVTTRERRLLTA 370

Query: 360 IEKLIEKKVDWLN 372
           IEK   + +  + 
Sbjct: 371 IEKATRQPLTPMP 383


>gi|56965701|ref|YP_177435.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
 gi|56911947|dbj|BAD66474.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
          Length = 493

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 145/368 (39%), Positives = 216/368 (58%), Gaps = 7/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F   GL   VV AV + G+ + TPIQ +TI LVL   DV G AQTGTGKT +F +P++ 
Sbjct: 3   NFEQFGLDASVVQAVTNIGFTEATPIQQETIELVLAGKDVIGQAQTGTGKTGAFGIPLVN 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+    L+L PTRELA QV     ++G+   +   ++ GG  F  Q + L++
Sbjct: 63  RIDSSNPLVQ---GLVLAPTRELANQVEQALRQFGRVKGVRTTVVYGGEDFGKQIRSLKQ 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  R  + + +IE +V+DEAD ML+MGFI  I+ I +  P   +  
Sbjct: 120 RPHIIVATPGRLLDHMRRKTIRLESIETVVLDEADEMLNMGFIEDIETILAETPQETRQT 179

Query: 182 -LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++ ++  F++NP RI V     T E I          + ++   +   L 
Sbjct: 180 LLFSATMPKRMESLASKFMKNPTRIAVKAKEVTMENI---AQQFIEVHEREKFDVLCRLI 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +T    I+F   K+ V  L  +L K+G+    +HG+++Q  R  +L  FKEG I ++V
Sbjct: 237 DLETPDLSIVFGRTKRRVDELAEALIKRGYRAEGLHGDLNQAKRNSVLRKFKEGLIDVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HVFNFD+P   E+Y+HRIGRTGRAGR G A TL  K + +H+  I
Sbjct: 297 ATDVAARGLDISGVTHVFNFDLPQDPESYVHRIGRTGRAGRSGIAITLATKPEREHVKLI 356

Query: 361 EKLIEKKV 368
           E + ++++
Sbjct: 357 ESVSKRRM 364


>gi|317474632|ref|ZP_07933906.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316909313|gb|EFV30993.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 644

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 137/385 (35%), Positives = 225/385 (58%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++
Sbjct: 3   TFEELGVSPEIRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             +       R+P++LIL PTREL  Q+A +   Y K  +    L + G    E+Q + L
Sbjct: 63  QQINVNN---RIPQSLILCPTRELCLQIAGDLNDYSKYIDGLRVLPVYGGSSIESQIRAL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD   R  + ++ I+ +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KRGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILADVPQERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+ +L N K I +   +   E+  +     +  ++K      + +
Sbjct: 180 TLLFSATMSPEITRISKKYLHNAKEITIGRKN---ESTSNVKHVVFTVHAKDKYAALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+
Sbjct: 237 VDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRE 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE++I KK  ++ G++ +     EK
Sbjct: 357 IERIIGKK--FIQGEMPTGKQICEK 379


>gi|223590235|sp|A5DL80|DBP2_PICGU RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 554

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 200/377 (53%), Gaps = 3/377 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ KPT IQ +  P+ L   D+ GIA TG+GKT S+ LP + 
Sbjct: 126 SFDEAGFPDYVLNEVKQQGFPKPTAIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIV 185

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA Q+     K+G +  +    + GG P   Q + L
Sbjct: 186 HINAQPLLGPGDGPIVLVLAPTRELAVQIQQECSKFGASSRIRNTCIYGGAPKGQQIRDL 245

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG ++ I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 246 ARGVEICIATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 305

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+Q ++ ++L +P ++ + +    A       V   +++ K+  L++ L 
Sbjct: 306 TLMWSATWPKEVQTLTRDYLNDPIQVTIGSLELAASHTITQIVEVLSEFEKRDRLVKHLE 365

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +    +  ++  +  K   +   S     G+   AIHG+  Q  R  +L  FK G   +
Sbjct: 366 TATADKEAKVLIFSSTKRACDEITSYLRADGWPALAIHGDKQQNERDWVLREFKTGKSPI 425

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARG+D+  + +V N+D+P   E+Y+HRIGRTGRAG  G A +L  + + K   
Sbjct: 426 MVATDVAARGIDVKGISYVINYDMPGNIEDYVHRIGRTGRAGTTGTAVSLFTEANSKLGG 485

Query: 359 AIEKLIEKKVDWLNGDL 375
            + K++ +    +  +L
Sbjct: 486 DLCKIMREANQTVPPEL 502


>gi|196003440|ref|XP_002111587.1| hypothetical protein TRIADDRAFT_23405 [Trichoplax adhaerens]
 gi|190585486|gb|EDV25554.1| hypothetical protein TRIADDRAFT_23405 [Trichoplax adhaerens]
          Length = 463

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 145/439 (33%), Positives = 225/439 (51%), Gaps = 21/439 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++ A+   G+  PTPIQ  TIP+ L   D+C  A TGTGKTA+F+LP+L 
Sbjct: 18  SFRDINLSRPLLKAISTLGFEHPTPIQSSTIPIALLGKDICACAATGTGKTAAFMLPILE 77

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     R+ + R L+L PTRELA QV    +   +  ++   L  GG+   +Q   L R
Sbjct: 78  RLIYRPKRIPVTRVLVLVPTRELAIQVFSVGKSLCQYTDIEFCLAAGGLDIASQEAALRR 137

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++DH  N     +  IEILV+DEADR +   F   +  +  L P  RQT
Sbjct: 138 NPDIVIATPGRLVDHLHNTPSFDLQGIEILVLDEADRQIHEHFKDQMDELIRLSPKGRQT 197

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTDE+++++   L  P R+ +N  +  A  +   F+            +   L 
Sbjct: 198 MLFSATMTDEVEELATLSLNKPIRLFINRNTDVANNLRQEFIRIRPAREDDREAIIAALC 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  +IF   K  V  L   L   G SV  +HGN+ Q  R++  + FK+G I ++V
Sbjct: 258 YRQFNERCLIFMPMKWQVHRLRIVLGLLGLSVDELHGNLTQLQRLEAFNRFKKGEIGILV 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARGLDI  V  V N+++P   + Y+HR+GRT RAG+ G++ TLV +++ K +  I
Sbjct: 318 ATDLAARGLDIEGVRTVINYNIPATTKQYVHRVGRTARAGQFGRSITLVVEKERKLLKTI 377

Query: 361 EK-----------------LIEKKVDWLNGDLSSLNPPLEK---IDIAQHNHARKNNPIP 400
            K                   ++K+  +  D+  +    E+     +++    +  N I 
Sbjct: 378 VKNSKTAVKSRIISPEIITKYKRKIQKIQADIKDILKAEEEEKAFRVSEMEVNKAKNLII 437

Query: 401 QKSTGFDRRKKNYSSQKSH 419
            +     R K+ +   +  
Sbjct: 438 HEEEIHSRPKRTFIQAEKR 456


>gi|189205174|ref|XP_001938922.1| ATP-dependent RNA helicase dbp2 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187986021|gb|EDU51509.1| ATP-dependent RNA helicase dbp2 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 573

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 116/396 (29%), Positives = 188/396 (47%), Gaps = 28/396 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ KPT IQ +  P+ L   DV G+A+TG+GKT ++ LP + 
Sbjct: 130 TFDEAGFPSYVMNEVKAQGFAKPTAIQAQGWPMALSGRDVVGVAETGSGKTLTYCLPAIV 189

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  LIL PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 190 HINAQPLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQIRDL 249

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 250 ARGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 309

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T ++SAT   E+++++ ++ ++  ++ + +   +A       V    ++ K+  + + L 
Sbjct: 310 TCMWSATWPKEVRQLAADYQKDWIQVNIGSMDLSANHRIQQIVEVCTEFEKRDRMAKHLE 369

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE------ 293
                  N I+     K V +      +Q            Q++    + N  +      
Sbjct: 370 TIMSDKDNKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPI 429

Query: 294 -----------------GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
                                      L     D+ ++ HVFN+D PN +E+Y+HRIGRT
Sbjct: 430 MVATDVASRGIASRDPIMIAVCSFHQSLTFALQDVRNITHVFNYDYPNNSEDYVHRIGRT 489

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLI---EKKVD 369
           GRAG +G A TL   E+ K    + +++   ++++D
Sbjct: 490 GRAGANGTAITLFTTENSKQARDLVQILTESKQQID 525


>gi|21555870|gb|AAM63951.1| Eukaryotic initiation factor 4A, putative [Arabidopsis thaliana]
          Length = 412

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 195/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F      
Sbjct: 40  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC---SG 96

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L++    +   + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 97  VLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 156

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 157 GVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 216

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 217 VFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDL--YE 274

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++    L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 275 TLAITQSVIFVNTRRKXDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 334

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V ++D + +  I+
Sbjct: 335 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 394

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     V+ L  +++ L
Sbjct: 395 KFYNVVVEELPSNVADL 411


>gi|41408619|ref|NP_961455.1| DeaD [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41396977|gb|AAS04838.1| DeaD [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 566

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 139/370 (37%), Positives = 209/370 (56%), Gaps = 7/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL + P V+ A+ D GY  PT IQ  TIP ++   DV G+AQTGTGKTA+F +P+L+
Sbjct: 14  TFADLQIHPSVLRAIADVGYETPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILS 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-E 120
            ++      +    L+L PTRELA QVA+ F +YG +      L I G    A      +
Sbjct: 74  KIDAASTATQ---ALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYAVQLAGLK 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  RG L +++++ LV+DEAD ML MGF   +  I S  P  +Q 
Sbjct: 131 RGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQV 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++K++  +L +P  +     ++TAE I   ++                ++
Sbjct: 191 ALFSATMPPAIRKLTAKYLHDPLEVSTKAKTTTAENISQRYIQVAGPRKMDALTRVLEVE 250

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + M   +      + V     +   +GFS  AI+G+I Q  R + ++  K+G I ++V
Sbjct: 251 PFEAMIVFVRTKQATEEVAERLRA---RGFSAAAINGDIPQGQRERTVAALKDGGIDILV 307

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  +   + AI
Sbjct: 308 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLKAI 367

Query: 361 EKLIEKKVDW 370
           EK   + +  
Sbjct: 368 EKATRQPLTE 377


>gi|310829374|ref|YP_003961731.1| hypothetical protein ELI_3819 [Eubacterium limosum KIST612]
 gi|308741108|gb|ADO38768.1| hypothetical protein ELI_3819 [Eubacterium limosum KIST612]
          Length = 547

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 141/409 (34%), Positives = 228/409 (55%), Gaps = 13/409 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L ++ +++ A+ D G+V  T IQ + IP +++  D+ G +QTGTGKT +F +P +
Sbjct: 1   MKFRELEINEQLLRAIDDMGFVDMTEIQERAIPRLMEGGDLIGKSQTGTGKTMAFAIPAI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++    +   P+ L+L PTRELA QV++ F K  K  +    + +  G   E Q + L
Sbjct: 61  EKIDPELRK---PQVLVLLPTRELALQVSEEFRKVLKYSHSIKVVAVFGGASIENQIRDL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR++DH  R  L  N + + V+DEAD ML+MGF   I+ I   V    Q
Sbjct: 118 KSGAQIVVGTPGRVMDHMRRKTLKFNALTMAVLDEADEMLNMGFREDIELILDAVDHDVQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + K++E + +NP  IE++  +  A +I       +    +        L
Sbjct: 178 TVLFSATMPKPILKIAETYQKNPTMIEISPKTMVAPSI---EQKYFNISDQNKFEALTRL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  +IFCN K  V  +  +L++ G+SV  IHG++ Q SR+ +L  F +G ++++
Sbjct: 235 LDVYKPQRSLIFCNTKHYVDEITENLQELGYSVDKIHGDMRQVSRLNVLKRFSQGRLKIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  VFN+DVP+  E Y+HRIGRTGRAG+ G + TL    D   +  
Sbjct: 295 VATDVAARGIDVDDVDIVFNYDVPDNEEYYVHRIGRTGRAGKSGLSLTLARSRDQFKLRK 354

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           I    +K ++        L P  E I+  +  H ++   +  +    +R
Sbjct: 355 ITDYTKKSIER------DLIPTSEVINDIKIAHFKERFKLKAEKGELER 397


>gi|108757460|ref|YP_630529.1| ATP-dependent RNA helicase [Myxococcus xanthus DK 1622]
 gi|108461340|gb|ABF86525.1| ATP-dependent RNA helicase [Myxococcus xanthus DK 1622]
          Length = 418

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 144/408 (35%), Positives = 218/408 (53%), Gaps = 11/408 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS + + A+  A + +PTPIQ + IP  L   DV G A TGTGKTA++VLP++ 
Sbjct: 4   TFDNLGLSRETLGALRRARFTQPTPIQQQAIPPALAGRDVIGCAATGTGKTAAYVLPLVE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   +  +     L+L PTREL  Q+A+    + +   LT A +IGG    AQ   L+ 
Sbjct: 64  RLAGKKGTLA----LVLAPTRELVQQIAEPVRFFAEPRRLTHATVIGGEDMGAQVNALKT 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
               +I TPGR++D      +   ++E LV+DEADRMLDMGF+P ++ I + +P  RQTL
Sbjct: 120 LPSFVIATPGRLVDLMENTAIRFPHLEALVLDEADRMLDMGFLPQLERIVAHLPRRRQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ + +++ L  P R+EV    + AE  E        +      L       
Sbjct: 180 LFSATLGPDVTRFAKSRLYKPVRLEVTRSGTPAERAEQRLYFLRPEEKTPLLLTLL---- 235

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F   K+ V  +  +L++ G     +H +  Q  R + +  F+ GT + +VA
Sbjct: 236 AQDSATALVFTRAKERVDKVQRALQRAGHRTAVLHADRTQNQRKQAMEGFRNGTYRCLVA 295

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ DVGHV N+D+P+ AE+Y+HRIGRT RA   G A T     + + I  IE
Sbjct: 296 TDIAARGLDVEDVGHVINYDLPHAAEDYVHRIGRTARAAASGVASTFATTREGQVITRIE 355

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            L+  ++  +         P+ K        A+K+   PQK  G  +R
Sbjct: 356 HLMRSEIPRVQVPRED---PVFKEAWEAFLAAQKDPGPPQKDHGQSKR 400


>gi|300692069|ref|YP_003753064.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
           RNA helicase(C-terminal) (rhlE-like) [Ralstonia
           solanacearum PSI07]
 gi|299079129|emb|CBJ51797.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
           RNA helicase(C-terminal) (rhlE-like) [Ralstonia
           solanacearum PSI07]
          Length = 614

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 146/385 (37%), Positives = 226/385 (58%), Gaps = 23/385 (5%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-- 63
           LGL  ++V A+ +  Y +PTP+Q + IP  L   D+   +QTG+GKTA+F+LP +  +  
Sbjct: 35  LGLDERIVRALGEVNYTQPTPVQAQAIPACLSGSDLLVTSQTGSGKTAAFMLPAIQRISE 94

Query: 64  ------------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVA 104
                              + R     P  L+L PTRELA QV     +YG++   +  A
Sbjct: 95  QPEPQRPRADGPPQRVKGRRPRPSPAKPSLLVLTPTRELALQVTTAASQYGRHLRRIVCA 154

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
            ++GG+P+  Q   L R  D++I TPGR+LDH + G++ ++ +++LV DEADRMLDMGF 
Sbjct: 155 SILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFA 214

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
             I+ I    P TRQ L+FSATM   +++++E  +++P+RIE+         IE     T
Sbjct: 215 DDIEAIVGATPATRQMLMFSATMDRRIEQLAERMMRDPQRIEIAAAKIDQSNIEERLHFT 274

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                K+   L   L    T+K  I+F   K++  +L   L + GFS  A+HG++ Q +R
Sbjct: 275 DDLSHKQ--QLLDHLLRDATLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQGAR 332

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + L+  + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR G 
Sbjct: 333 NRTLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGI 392

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVD 369
           A  LV   D      IE+ +++++D
Sbjct: 393 AINLVNHGDTFQWRRIERFVDRRID 417


>gi|73969111|ref|XP_850120.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 2 [Canis
           familiaris]
          Length = 652

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 135/381 (35%), Positives = 206/381 (54%), Gaps = 5/381 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 214 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL++  +I V     +A       V    +  K   L+Q + +
Sbjct: 274 LMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 333

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 300 VASDLAARGL--DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +A+D+A+RGL  D+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K  
Sbjct: 394 IATDVASRGLGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 453

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K++E+    +N  L  L
Sbjct: 454 RELIKVLEEANQAINPKLMQL 474


>gi|288929803|ref|ZP_06423646.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288328904|gb|EFC67492.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 636

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 137/385 (35%), Positives = 222/385 (57%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+S  +  A+ + G+ +P P+Q + IP +L   +DV  +AQTGTGKTA++ +P+L
Sbjct: 3   TFKELGVSEPICRAIEELGFEQPMPVQEEVIPYLLGNGNDVIALAQTGTGKTAAYGIPVL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             +       +  + LIL PTREL  Q+AD+   + K       + + G    E Q ++L
Sbjct: 63  QKVNP---EEKHTQALILSPTRELCLQIADDLADFSKYVQGLHVVPVYGGASIEMQIRQL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GA +++ TPGR++D   RG   ++N+  +V+DEAD ML+MGF   I  I   VP  R 
Sbjct: 120 RKGAQIIVATPGRLIDLMKRGVAQLDNVNNVVLDEADEMLNMGFTESINAIFEGVPADRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E++K+++N+L + K I V + +  AE + H     Y   +K   L  + L
Sbjct: 180 TLLFSATMSREIEKIAKNYLNDYKEIVVGSRNEGAEKVNH---IYYMVNAKDKYLALKRL 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIFC  K     +   L + G++  A+HG++ Q+ R   +  F+   +Q +
Sbjct: 237 VDFYPRIFAIIFCRTKLETQEIADKLIRDGYNAEALHGDLSQQQRDLTMQKFRNHNVQFL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G + +++   +   + A
Sbjct: 297 VATDVAARGLDVDDLTHVVNYGLPDDIESYTHRSGRTGRAGKKGTSISIIHTRERSKVRA 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IEK+I+K  ++++G L +      K
Sbjct: 357 IEKIIQK--EFVDGTLPTAKEICSK 379


>gi|260769757|ref|ZP_05878690.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
 gi|260615095|gb|EEX40281.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
          Length = 397

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 150/403 (37%), Positives = 229/403 (56%), Gaps = 7/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV + GY KPT IQ K IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSKLGLSEALTQAVAELGYQKPTTIQTKAIPVILQGQDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                +   R +  R LIL PTRELA QVAD   +YG++  LT   + GG+  +AQ ++L
Sbjct: 61  HKLQGRETQRKKRIRALILVPTRELAIQVADKVAQYGQHTGLTTLAMYGGVEEQAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR+LD + +  +    +E++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IEGVDVLVATPGRLLDMYGQRAVYFEEVEMVVLDEADRMLDMGFIDSINKIIDRLPRDAQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++ +++  + +P  I +    ++   IE   +                 
Sbjct: 181 YLLFSATLSHKVRDLAKTAVNDPFEISIAANQASKSNIEQWLITVDKDKKSALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++     +IF   K     L   LEK+G +  A H    Q  R+++L +FK G I+ M
Sbjct: 238 ITENNWDQALIFIETKHGAAKLASQLEKRGITAEAFHSGRSQAVRVQLLEDFKAGKIKYM 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ + ARG+DI ++  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 IATGVGARGIDIHELSRVVNYDLPFPADEYVHRIGRTGRANAKGEAISFVSKDNFKNLCM 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           IE  +   ++     +     P + + I+  N+  K+  +PQ 
Sbjct: 358 IESRLGHLIER---RVVEGFEPKKPVPISILNYVPKSKRMPQD 397


>gi|148973895|ref|ZP_01811428.1| RhlE [Vibrionales bacterium SWAT-3]
 gi|145965592|gb|EDK30840.1| RhlE [Vibrionales bacterium SWAT-3]
          Length = 401

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 152/407 (37%), Positives = 235/407 (57%), Gaps = 7/407 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V AV   GY KPT IQ K IP+VL   ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSSPIVKAVAKQGYEKPTSIQEKAIPIVLSGKNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R +  R +IL PTRELA QV  N +KY K  NLT   + GG+ ++ Q  +L
Sbjct: 61  EMLSKGETQRKKRIRAVILTPTRELAVQVEQNIKKYAKFLNLTSLAMYGGVSYQHQKDRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR++D + +  +  + +E+LV+DEADRMLDMGFI  I  I + +P   Q
Sbjct: 121 IEGVDILVATPGRLIDMYGQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIARLPQDVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++  ++ ++++ + + + I   + + T  +  +           + + L   +
Sbjct: 181 NLLFSATLSTPVRALAKSAISDAEEI---SIAKTDASKANIEQWLVTVDKDRKSALLSHM 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      +IF   K     L   LEK+G    A H    Q  R KIL++FK+G ++ +
Sbjct: 238 ITEGNWDQALIFIETKHGAAKLVAQLEKRGIQAEAFHSGRSQAIREKILADFKKGHLKFL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI ++  V N+D+P  A++Y+HRIGRTGRA   G+A + ++K++ K++  
Sbjct: 298 VATGVAARGIDIDNLPRVVNYDMPFPADDYVHRIGRTGRADATGEAISFLSKDNFKNLCI 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
           IEK +   ++     +     P +++ I+  N   K     Q+  G 
Sbjct: 358 IEKRLGHLIER---RVVEGFEPRKEVPISVLNFVPKKKREQQEKEGK 401


>gi|1170506|sp|P41379|IF4A2_NICPL RecName: Full=Eukaryotic initiation factor 4A-2; Short=eIF-4A-2;
           AltName: Full=ATP-dependent RNA helicase eIF4A-2
 gi|19697|emb|CAA43513.1| nicotiana eukaryotic translation initiation factor 4A [Nicotiana
           plumbaginifolia]
          Length = 413

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 195/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+         + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 101 QLDYSLVE---CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V K+D + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINSVTKDDERMLFDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     ++ L  +++ L
Sbjct: 396 KFYNVVIEELPANVADL 412


>gi|52545677|emb|CAH10627.2| hypothetical protein [Homo sapiens]
          Length = 652

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 135/381 (35%), Positives = 206/381 (54%), Gaps = 5/381 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 214 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL++  +I V     +A       V    +  K   L+Q + +
Sbjct: 274 LMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 333

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 300 VASDLAARGL--DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +A+D+A+RGL  D+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K  
Sbjct: 394 IATDVASRGLGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 453

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K++E+    +N  L  L
Sbjct: 454 RELIKVLEEANQAINPKLMQL 474


>gi|302792278|ref|XP_002977905.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
 gi|300154608|gb|EFJ21243.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
          Length = 741

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 141/439 (32%), Positives = 224/439 (51%), Gaps = 6/439 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L +S  ++ A    GY +PTPIQ   IPL L   D+CG A TG+GKTA+F LP+L 
Sbjct: 116 SFIELNVSRPLLRACDALGYRQPTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPILE 175

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     R+   R LI+ PTRELA Q+    EK  +  ++   L++GG+  + Q   L  
Sbjct: 176 RLLFRPRRIPAIRVLIITPTRELAVQLHSMIEKLAQFTDIRCCLVVGGLSSKVQEVALRT 235

Query: 122 GADVLICTP-GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D+++ TP   I    N   + +  + ILV+DEADR+L++GF   I  +  L P  RQT
Sbjct: 236 HPDIVVATPGRMIDHLRNTQSVGLEELAILVLDEADRLLELGFREEIHELVKLCPSRRQT 295

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTDE+ ++ +  L++P R+  +  +    T+    +   A + +    +   L 
Sbjct: 296 MLFSATMTDEVSELIKLSLKSPVRLSADPSTERPSTLTEEVIRIRAGHEEDKEAIVLSLC 355

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+      IIF   K     L       G     +HGN+ Q  R++ L  F++  +  ++
Sbjct: 356 SRSLKSKTIIFSGTKVEAHRLKILFGLSGLKSAELHGNLTQAQRLEALEAFRKQEVDFLI 415

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V N + P   + Y+HR+GRT RAGRHG++ TL+ ++D   + A+
Sbjct: 416 ATDVAARGLDIIGVESVINLECPKEIKTYVHRVGRTARAGRHGRSVTLMTEQDRLLLKAV 475

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKI-----DIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            K    K+       +S+    E+I     D+ Q     +     +K+     + +N   
Sbjct: 476 AKRAGSKLQKRVVAATSIASWRERIEKMEEDLVQILQQEREEKFLRKAEMEANKAQNMMD 535

Query: 416 QKSHIPLKESEKISKLQQD 434
            ++ I  +  +   + QQD
Sbjct: 536 YEAEIFARPKKTWFQSQQD 554


>gi|209544711|ref|YP_002276940.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532388|gb|ACI52325.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 427

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 144/370 (38%), Positives = 222/370 (60%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADL L+P ++ A+ + GY  PTPIQ ++IP++L+  D+ G+AQTGTGKTA+F LP+L
Sbjct: 3   MTFADLSLAPTLLRALAEEGYASPTPIQAQSIPMLLEGRDLLGMAQTGTGKTAAFALPLL 62

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L               +L PTREL +Q+AD FE +G++   +V  + GG+    Q   
Sbjct: 63  HRLAMAPRPAPKGGARVLVLAPTRELVSQIADGFESFGRHQPPSVTTIFGGVSQVHQVNA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+++  PGR+LD  ++G   ++ +E LV+DEAD+MLDMGF   I+ I + +P  R
Sbjct: 123 LKAGVDIIVAAPGRLLDLIDQGLCDLSQLEALVLDEADQMLDMGFARPIERIVATLPKDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            T+LFSATM   +  ++E+ L++P ++E+  PS+T + IE   +   A            
Sbjct: 183 HTVLFSATMPKSIATLAESLLRDPAKVEIAPPSTTVDRIEQSVMFVDAA---DKKAALLA 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   ++F  QK     +C  + + G +  A+HGN  Q  R + L  F+ GT Q+
Sbjct: 240 MLRTPGIGQAVVFTLQKNIANEVCAFITEAGITAEALHGNKSQGQRERALDAFRSGTAQV 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  V HVFN D+P+  E+Y+HRIGRTGRAGR+G A TL   E    + 
Sbjct: 300 LVATDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTGRAGRNGFAITLCDAEQRAWLR 359

Query: 359 AIEKLIEKKV 368
            +E+ I + +
Sbjct: 360 DVEREIGRAL 369


>gi|114608129|ref|XP_518584.2| PREDICTED: probable ATP-dependent RNA helicase DDX43 [Pan
           troglodytes]
          Length = 648

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 141/412 (34%), Positives = 220/412 (53%), Gaps = 11/412 (2%)

Query: 2   DFAD-LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F D     P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT  +++P  
Sbjct: 242 TFDDAFQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGF 301

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                    + +   P  L+L PTRELA QV     KY     L    + GG   + Q +
Sbjct: 302 IHLVLQPSLKGQKNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIE 360

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L++G D++I TPGR+ D      + + NI  LV+DEAD+MLDMGF P I  I   V   
Sbjct: 361 ELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPD 420

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++ +AT    + ++++++L+ P  + V T    A +     +    +  K   + Q 
Sbjct: 421 RQTVMTTATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHM-QT 479

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            LQ+  +    I+F ++K    +L   L     SV ++HG+ +QR R K L NFK G ++
Sbjct: 480 FLQNMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVR 539

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+DLA+RGLD+ DV HV+NFD P   E Y+HRIGRTGRAGR G + T + + D +  
Sbjct: 540 ILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVA 599

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             +  ++E+    +  +L S+           H   R+     ++  G  ++
Sbjct: 600 SELINILERANQSIPEELVSMAE-----RFKAHQQKREMERKMERPQGRPKK 646


>gi|145300478|ref|YP_001143319.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853250|gb|ABO91571.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 417

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 166/403 (41%), Positives = 233/403 (57%), Gaps = 11/403 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA+L LSP++   + + GY  PTPIQ + IP++L   D+   AQTGTGKTA+FVLP+  
Sbjct: 5   SFAELALSPRLQQTLSELGYAAPTPIQARAIPVILTGRDLMAGAQTGTGKTAAFVLPLLE 64

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +        R  R L+L PTRELA QV D+  +YG+   LT AL+ GG+   AQ + L
Sbjct: 65  QLMQHPASDTARPIRALVLVPTRELAVQVFDSVVRYGQGTGLTSALVYGGVSIAAQVEAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D+LI TPGR+LDH  +G L + ++  LV DEADRMLDMGF+  I+ +   +P  RQ
Sbjct: 125 QAGVDLLIATPGRLLDHLRQGALSLEHLSHLVFDEADRMLDMGFMDEIKALLKQIPADRQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  D L  +S   L++P+ IEV   ++TA  +E    A   +         + L
Sbjct: 185 TLLFSATCDDNLFALSRVLLRDPELIEVAPRNTTAAEVEQRVYAVDGERKVAL---VEHL 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    +IF   ++    L   L K G +  A HG++ Q +R K+L  F+ GT+Q +
Sbjct: 242 IKVKGWAPVLIFSRTRQGADKLAQQLGKAGINALAFHGDLSQGAREKVLLAFRAGTLQAL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI D+ +V N + P  AE+Y+HRIGRTGRAG  G A TL + ED   ++ 
Sbjct: 302 VATDVAARGLDILDLNYVINLEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEK 361

Query: 360 IEKLIEKKV--DWLNG---DLSSLNP-PLEKIDIAQHNHARKN 396
           +E +++ ++   W  G   DL+   P P      AQ   ARK 
Sbjct: 362 VEAVLDTRLPQQWFPGFEPDLTRFEPEPRRSGKAAQKQRARKQ 404


>gi|258591206|emb|CBE67503.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
           (rhlE gene) [NC10 bacterium 'Dutch sediment']
          Length = 479

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 168/472 (35%), Positives = 241/472 (51%), Gaps = 29/472 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+   L+  ++ AV + G+  PTPIQ   +P +L+  DV   A TG+GKTA+F+LP+L
Sbjct: 1   MSFSSFKLNANLLKAVHNMGFKSPTPIQRVAVPPLLEGRDVMASAVTGSGKTAAFLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +        R L+L PTRELAAQ++D+  +   +  L  A + GG+    Q +   
Sbjct: 61  HCLMEKPRGTT--RALVLAPTRELAAQISDHLRELAAHTPLKGAAVYGGVSMGPQEQAFR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR+LDHF      +  IE LV+DEADRMLDMGF+P I+ I   VP  RQT
Sbjct: 119 RGVDVLIATPGRLLDHFQYPYARLAGIEHLVLDEADRMLDMGFLPDIRRILQHVPKKRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+   + +++ + LQNP  + +   ++ A  I H       +      L      
Sbjct: 179 LLFSATLPAPIMELARDMLQNPVSLNIERKAAPAAGITHVAYPVPHELKSTLFLEL---V 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K+ + F   K     L   LEK G +   IHGN  Q  R + L++FK G  +++V
Sbjct: 236 KNSASKHVLAFTRTKHRANRLADFLEKHGVTCERIHGNRSQAQRTEALASFKRGRCRVLV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  +G V NFDVP   E+YIHR+GRTGR    G A+TLV+  +   + AI
Sbjct: 296 ATDIAARGIDVEALGLVVNFDVPQLPEDYIHRVGRTGRVDATGDAYTLVSPNEEGTLRAI 355

Query: 361 E-----KLIEKKVDWLNGDLSSLN----PPLEKIDI-----------AQHNHARKNNP-I 399
           E     +L  +KV   N   +       P  E+I             A+ N AR+  P +
Sbjct: 356 ESNIGTRLPRQKVQGFNYATTPTERFEVPLAERIAAIRTRKAEERVRAKANAARRTAPGM 415

Query: 400 PQKSTGFDRRKKNYSSQKSHIPLK---ESEKISKLQQDIQENDADSLGFRGN 448
              S G     +N  S +S  P +   +S       + +        G+R N
Sbjct: 416 TVVSAGHGTAGQNPRSNRSAGPSRLGAKSATGKSFSRPVSGRANGQTGWRSN 467


>gi|269119742|ref|YP_003307919.1| DEAD/DEAH box helicase [Sebaldella termitidis ATCC 33386]
 gi|268613620|gb|ACZ07988.1| DEAD/DEAH box helicase domain protein [Sebaldella termitidis ATCC
           33386]
          Length = 530

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 142/391 (36%), Positives = 217/391 (55%), Gaps = 13/391 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F DLG+S   + A+   G+  P+ IQ   IP +L+   ++ G AQTGTGKTA+F +P+L
Sbjct: 5   SFLDLGVSEATLKALDKKGFTSPSAIQTLVIPELLKERTNLIGQAQTGTGKTAAFAIPIL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+   +     R ++L PTRELA QVAD          + V  + GG   + Q KK++
Sbjct: 65  ETLDCDGS----VRAIVLAPTRELANQVADEMYSLRGKKEIKVLPVYGGQSIDQQIKKIK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DV++ TPGRILD  NR  + +NN+E  V+DEAD ML+MGFI  I+ I       ++ 
Sbjct: 121 KGIDVIVGTPGRILDLMNRKVIKLNNLEYFVLDEADEMLNMGFIEDIELILERTNEDKKM 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+ D + K+++ F+++ K ++V T   T    E  +         +         
Sbjct: 181 LFFSATIPDSIMKIAKKFMKDYKLLKVKTKELTTNLTEQIYFEVTEGDKFEALCRVLDYV 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  GI+FC  K +V ++   L+ +G+   AIHG+I Q  RMK L +FK+  I ++V
Sbjct: 241 HDFY---GIVFCRTKSDVDDVAQHLKGRGYDAEAIHGDITQAMRMKTLEDFKKKRINILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T V  ++   I  I
Sbjct: 298 ATDVAARGIDVNDLTHVINYSIPQEPESYVHRIGRTGRAGKKGIAITFVTPKEASKISKI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
           ++L +  +         +    E I + + N
Sbjct: 358 QRLTKTDIKK-----EKIPKIEEVISVKKEN 383


>gi|73969113|ref|XP_860733.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 12 [Canis
           familiaris]
          Length = 656

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 130/385 (33%), Positives = 201/385 (52%), Gaps = 9/385 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 214 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL++  +I V     +A       V    +  K   L+Q + +
Sbjct: 274 LMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 333

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 300 VASDL------AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +A+D+          + + DV  V N+D PN +E+Y+HRIGRT R+   G A+T     +
Sbjct: 394 IATDVASRGLGFCIYVYVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGN 453

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL 378
           +K    + K++E+    +N  L  L
Sbjct: 454 LKQARELIKVLEEANQAINPKLMQL 478


>gi|255713670|ref|XP_002553117.1| KLTH0D09328p [Lachancea thermotolerans]
 gi|238934497|emb|CAR22679.1| KLTH0D09328p [Lachancea thermotolerans]
          Length = 551

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 201/377 (53%), Gaps = 3/377 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ KPT IQ +  P+ L   D+ G+A TG+GKT S+ LP + 
Sbjct: 112 TFDEAGFPEYVLSEVKAEGFEKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIV 171

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      +    P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q ++L
Sbjct: 172 HINAQPLLSPGDGPIVLVLAPTRELAVQIQTECSKFGKSSRIRNTCVYGGVPRGHQIREL 231

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA+++I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 232 TRGAEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 291

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+Q+++ ++L +P ++ V +    A       V   +   K+  LL+ L 
Sbjct: 292 TLMWSATWPKEVQQLARDYLHDPIQVNVGSLELAASHNIAQIVEVVSDMEKRDRLLKHLE 351

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            + +   + I+     K   +       + G+   AIHG+  Q  R  +L  F+ G   +
Sbjct: 352 TASEDKDSKILIFASTKRTCDEITRYLRQDGWPALAIHGDKAQNERDWVLQEFRTGNSPI 411

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARG+D+  +  V N+D+P   E+Y+HRIGRTGRAG  G A +   + +     
Sbjct: 412 MVATDVAARGIDVKGINFVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEANKGMGA 471

Query: 359 AIEKLIEKKVDWLNGDL 375
            +  ++ +    +  +L
Sbjct: 472 QLISIMREANQQIPPEL 488


>gi|121699880|ref|XP_001268205.1| DEAD box  RNA helicase (Hca4), putative [Aspergillus clavatus NRRL
           1]
 gi|134034070|sp|A1CTZ2|DBP4_ASPCL RecName: Full=ATP-dependent RNA helicase dbp4
 gi|119396347|gb|EAW06779.1| DEAD box RNA helicase (Hca4), putative [Aspergillus clavatus NRRL
           1]
          Length = 823

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 124/454 (27%), Positives = 208/454 (45%), Gaps = 24/454 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F+DL LS   +  +  + +   T IQ + I   L+  DV G A+TG+GKT +F++P + 
Sbjct: 50  SFSDLPLSEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPVLE 109

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  +  A       LIL PTRELA Q+ +   K G+ +  +  L+IGG     + ++L 
Sbjct: 110 NLYRRQWAEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLREEQERLG 169

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +            N+++LV+DEADR+LD+GF   +  I   +P  RQT
Sbjct: 170 RMNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIVGHLPKERQT 229

Query: 181 LLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT T ++      +           T S+                 K   L   + 
Sbjct: 230 LLFSATQTKKVSDLARLSLRDPEYVAVHETASTATPAKLQQHYVIAPLPQKLDILWSFIR 289

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +  +         ++   V       + G  +  +HG   Q  R+ I++NF +    ++
Sbjct: 290 SNLKSKTMVFFSSGKQVRFVYESFRHMQPGIPLMHLHGRQKQGGRLDIMTNFSQAKHCVL 349

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            ++D+AARGLD P V  V   D P  A+ YIHR+GRT R GR G+A   +   + + +  
Sbjct: 350 FSTDVAARGLDFPAVDWVIQMDCPEDADTYIHRVGRTARYGRDGRAVLFLDPSEEEGM-- 407

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +++L +KKV            P+EKI+I  +      + +  ++  F   +  Y  QK+ 
Sbjct: 408 LKRLEQKKV------------PIEKINIKANKQQSIKDQL--QNMCFKDPELKYIGQKAF 453

Query: 420 IP------LKESEKISKLQQDIQENDADSLGFRG 447
           I       +++ ++I KL++   +  A SLG  G
Sbjct: 454 ISYVKSVYIQKDKEIFKLKELKLDEFASSLGLPG 487


>gi|119945503|ref|YP_943183.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119864107|gb|ABM03584.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 433

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 153/442 (34%), Positives = 241/442 (54%), Gaps = 18/442 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M    +GLS +++ AV   GY   TPIQ + IP++    D+   AQTGTGKTA+F LP+L
Sbjct: 1   MSVDAIGLSAELLKAVKACGYKNLTPIQQQAIPIIRSGSDLLASAQTGTGKTAAFTLPIL 60

Query: 61  TILEKGRARVRMPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            IL K         T I      PTRELAAQVA N ++Y +   LT  ++ GG   ++Q 
Sbjct: 61  DILAKNANEKPTTNTTIKALILTPTRELAAQVAANVKEYSQFLPLTSGVVSGGRSMDSQT 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ G DVL+ TPGR+L+H     + +++++ L +DEADRMLD+GF+  IQ +   +  
Sbjct: 121 KMLKVGVDVLVATPGRLLEHLTLRNVDLSHVKYLTLDEADRMLDLGFLTDIQKLMEAIKQ 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             QTL+FSAT +++++ +++  L  PK +E++       T        Y     +   L 
Sbjct: 181 KHQTLMFSATFSNKVKTLAKQILTTPKTLEISP---QNSTAGKVKQQVYWVSETRKNELL 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L      K  ++F   K++   L   L+  G      HG+  Q +R + +  F EG++
Sbjct: 238 SELIGVKNWKQVLVFAGTKESANLLAKELQLDGIKTAVCHGDKTQGARNQAIQKFTEGSV 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLDIPD+ +V NF +P  AE+YIHRIGRT RAG+ G A +LV+ +D + 
Sbjct: 298 RVLVATDVAARGLDIPDLPYVVNFHLPFLAEDYIHRIGRTARAGKSGTAVSLVSPKDEQF 357

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD---RRKKNY 413
           +D IE LI +K + +         P  +ID +   +  +++  P K + +     R K  
Sbjct: 358 LDNIETLIGRKFERIVY-------PGYEIDSSLPGYYEQSSDKPLKKSRYKATQERNKML 410

Query: 414 SSQKSH-IPLKESEKISKLQQD 434
             Q++   P     + +K ++ 
Sbjct: 411 EIQRAKNTPAAIRREKNKNKKQ 432


>gi|71279863|ref|YP_269911.1| putative ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea
           34H]
 gi|71145603|gb|AAZ26076.1| putative ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea
           34H]
          Length = 448

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 117/375 (31%), Positives = 194/375 (51%), Gaps = 1/375 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F+D GL   ++  +   G+ +PT IQ + IP  +  HD+   ++TG+GKT +F++P +
Sbjct: 1   MQFSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +      R PR +IL PTRELA QV      +  N      L++GG  F  Q K L
Sbjct: 61  QRLSKNRALSKRDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++  + ++ TPGR+ DH  +G   +N +E+L++DEADRMLD+GF   +  I       ++
Sbjct: 121 QKEPEFIVATPGRLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQINKAADHRKR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  Q          K   +   +  +E ++       A    +   L Q  
Sbjct: 181 QTLLFSATLDHAQVNEFATELLTKPKRIAINAGHSEHVDIAKRFYLADNLTQKEALLQHF 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  IIF   + +   L   L +Q  +  A+ G ++Q  R +I+ +F +G  +++
Sbjct: 241 LVTEKSQQIIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +DLA+RGLD+ +V HV NFD+P   E ++HRIGRTGRAG  G A +LV   D   +  
Sbjct: 301 VTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLSLKN 360

Query: 360 IEKLIEKKVDWLNGD 374
           +E  +++K+ +   +
Sbjct: 361 VEAFLQQKISFTKVE 375


>gi|329960668|ref|ZP_08299011.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
 gi|328532541|gb|EGF59335.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
          Length = 648

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 135/385 (35%), Positives = 227/385 (58%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+S ++  A+ + GY +P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++
Sbjct: 3   TFEELGVSAEIRRAIEEMGYEQPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             +       R+P++LIL PTREL  Q+A +   Y K  +    L + G    E+Q + L
Sbjct: 63  QKINVNN---RIPQSLILCPTRELCLQIAGDLNDYSKYIDGLRVLPVYGGSSIESQIRAL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD   R  + ++ I+ +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KRGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILADVPQERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+ +L++ K I +   +   E+  +     +  ++K      + +
Sbjct: 180 TLLFSATMSPEIARISKKYLRDAKEITIGRKN---ESTSNVKHVVFCVHAKDKYAALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +    GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+
Sbjct: 237 VDYNPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKLRE 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE++I KK  ++ G++ +     EK
Sbjct: 357 IERIIGKK--FIAGEMPTGKQICEK 379


>gi|322692214|gb|EFY84155.1| dependent RNA helicase drs-1 [Metarhizium acridum CQMa 102]
          Length = 780

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 142/469 (30%), Positives = 233/469 (49%), Gaps = 27/469 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++  +   G+ KPTPIQ KTIP+ L   D+ G A TG+GKT +F +P+L 
Sbjct: 254 SFQGMSLSRPILRGLAAVGFTKPTPIQAKTIPIALMGKDLVGGAVTGSGKTGAFFVPILE 313

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     ++   R ++L PTRELA Q  D   K  +  ++  +L +GG+  +AQ  +L  
Sbjct: 314 RLLFRPKKIPTTRVVVLTPTRELAMQCHDVGTKLARYTDIKFSLAVGGLSLKAQEVELRL 373

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D+++ TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 374 RPDIIVATPGRFIDHMRNSASFNVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQT 433

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT  + ++    L  P R+ V++   T  T+   FV        K       L 
Sbjct: 434 MLFSATMTSTVDRLIRAGLNKPVRLMVDSQKKTVTTLVQEFVRLRPGREDKRMGYLAYLC 493

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  IIF  QKK            G S   +HG+++Q  R+  +  F++G +  ++
Sbjct: 494 KTFYHERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQSQRISSVEAFRDGKVSYLL 553

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G A TL A+ D K + A 
Sbjct: 554 ATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRKGTAVTLAAEGDRKVVKAA 613

Query: 361 EKL--------------------IEKKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNN 397
            K                     +++++D +  ++  +        ++  A+    +  N
Sbjct: 614 VKAGKAQGAKITSRIIAPADADKLQEEIDGMEDEIDEIMQEEKEERQLAQAEMQVKKGEN 673

Query: 398 PIPQKSTGFDRRKKNYSSQ---KSHIPLKESEKISKLQQDIQENDADSL 443
            I  ++    R K+ +      K        ++++ L++ +++  +  L
Sbjct: 674 LIEHEAEIKSRPKRTWFETEHDKKKAKQAGKDELNGLRESLKKKGSGKL 722


>gi|315224756|ref|ZP_07866579.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga
           ochracea F0287]
 gi|314945384|gb|EFS97410.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga
           ochracea F0287]
          Length = 584

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 130/372 (34%), Positives = 211/372 (56%), Gaps = 9/372 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLP 58
           M+ F  LGL+  ++ A+ D G+  P+ IQ K IP +L    D+  +AQTGTGKTA+F  P
Sbjct: 1   MNLFEQLGLNEPILKAISDMGFETPSEIQQKAIPTLLANGADMVALAQTGTGKTATFGFP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNK 117
           +L +++      R+ + LIL PTREL  Q+A     Y K       + + G    E Q +
Sbjct: 61  LLQLIDT---DSRVTQGLILSPTRELCLQIASELRNYAKYLTKVNVVAVYGGASIEEQAR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++GA +++ TPGR+ D   R  + +++I   V+DEAD ML+MGF   I  I S  P  
Sbjct: 118 SLKKGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILSHTPQE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           + T LFSATM +E+ K++  F++ P  I V T +    T++H     Y    +      +
Sbjct: 178 KSTWLFSATMPNEVAKIARKFMRKPIEITVGTRNQATNTVQH---EYYIVSGRHRYQALK 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   +     ++FC  K++   +   L + G++  A+HG++ Q  R  ++ +F+   IQ
Sbjct: 235 RLADANPDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ D+ HV ++ +P+  E Y HR GRTGRAG+ G +  ++ K ++K I
Sbjct: 295 MLVATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVILPKSEVKKI 354

Query: 358 DAIEKLIEKKVD 369
             IEK+I +  +
Sbjct: 355 KTIEKMIGQPFE 366


>gi|145349088|ref|XP_001418972.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579202|gb|ABO97265.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 413

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 196/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  TFDTMNLQENLLRGIYAYGFEKPSAIQQRGIVPFSKGFDVIQQAQSGTGKTATFCAGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     V   + L+L PTRELA Q+       G    +     +GG       + L+ 
Sbjct: 101 SLDYS---VHECQALVLAPTRELAQQIEKVMRALGDYLQVKCHACVGGTSVREDTRILQA 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  ++I+I  +DEAD ML  GF   I +I +L+P   Q  
Sbjct: 158 GVHVIVGTPGRVYDMLRRRALKSDSIKIFALDEADEMLSRGFKDQIYDIFTLLPPKVQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATLPPEALEITRKFMTKPVRILVKRDELTLEGIKQFYVNVDKEQWKLDTLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L  ++  + F+V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFANTRRKVDWLTDNMRARDFTVSATHGDMDQNTRDVIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G +   V  ED + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTAEDERLLQDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           +  +  ++ L  +++ L
Sbjct: 396 RFYQTVIEELPSNVADL 412


>gi|116072449|ref|ZP_01469716.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
 gi|116064971|gb|EAU70730.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
          Length = 607

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 133/371 (35%), Positives = 209/371 (56%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G S  ++  + + GY  P+PIQ    P ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 59  FDGFGFSEALLKTLAEKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 118

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLER 121
           LE GR   + P+ L+L PTRELA QVAD+F+ Y   +     L + G   F +Q   L R
Sbjct: 119 LESGR---KTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRR 175

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR++DH  +G L  + +  LV+DEAD ML MGFI  ++ I   +P  RQ +
Sbjct: 176 GVDVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVV 235

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++S+ +L +P  + + T     + I    +     +        Q +  
Sbjct: 236 LFSATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKLIRQRAITVPMSHK---LEALQRVLD 292

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  IIF   K   + +  +LE  G  V  ++G++ Q  R + +   + G++ ++VA
Sbjct: 293 ACGGEGVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDILVA 352

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N+D+P  +E Y+HRIGRTGRAGR G+A   +   + + I  +E
Sbjct: 353 TDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRERRFIRNLE 412

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 413 RATGQPIELME 423


>gi|73969105|ref|XP_860607.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 10 [Canis
           familiaris]
          Length = 655

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 131/384 (34%), Positives = 203/384 (52%), Gaps = 8/384 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   +  
Sbjct: 214 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRVCKTD 273

Query: 181 L-----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                 ++SAT   E+++++E+FL++  +I V     +A       V    +  K   L+
Sbjct: 274 DTLQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLI 333

Query: 236 QQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           Q + +   +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G
Sbjct: 334 QLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSG 393

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++
Sbjct: 394 KAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNL 453

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL 378
           K    + K++E+    +N  L  L
Sbjct: 454 KQARELIKVLEEANQAINPKLMQL 477


>gi|254229918|ref|ZP_04923321.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262394827|ref|YP_003286681.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|151937554|gb|EDN56409.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262338421|gb|ACY52216.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
          Length = 402

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 151/405 (37%), Positives = 232/405 (57%), Gaps = 7/405 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M  + LGLS  +  AV   GY KPT IQ K IP+VL+  ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPISKLGLSASITDAVKALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G   R +  R +IL PTRELA QV  + E YGKN  L    + GG+ +  Q + L
Sbjct: 61  EKLSQGETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVDYAPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR++D + +  +  + +E+LV+DEAD+MLDMGFI  I  I   +P   Q
Sbjct: 121 IEGVDIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDAIDKIVDCMPEHVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT+++ ++ +++N + +P+ I   T +  + +  +             + L   +
Sbjct: 181 SLLFSATLSNPVRDLAKNAIIDPEEI---TIAKHSASKSNIKQWITTVDKDMKSSLLSHM 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++     ++F   K     L   LEK+G    A H   +QR R +++  FK G IQ +
Sbjct: 238 LKENDWSQVLVFIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI ++  V N+D+P  A+ Y+HRIGRTGRAG  G+A +LV+K+D K++  
Sbjct: 298 VATGVAARGIDIDNLPVVINYDLPYPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCM 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           IE  +   ++ +  D  +   P + + I+  N+  KN   P    
Sbjct: 358 IESRLGHLLERVEVDGFA---PRKPVPISILNYVPKNKRKPHDKR 399


>gi|148232012|ref|NP_001083721.1| ATP-dependent RNA helicase ddx6 [Xenopus laevis]
 gi|1044938|emb|CAA63149.1| RNA helicase p54 [Xenopus laevis]
          Length = 481

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 113/377 (29%), Positives = 194/377 (51%), Gaps = 8/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGKT ++++P+L 
Sbjct: 96  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKTGAYLIPLLE 155

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+    +    + +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 156 RLDL---KKDCIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 212

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++I+++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 213 DTVHVVIATPGRILDLIKKGVAKVDHIQMIVLDEADKLLSQDFMQIMEDIIMTLPKNRQI 272

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK    F+    +           T++           ++       L 
Sbjct: 273 LLYSATFPLSVQK----FMTLHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLF 328

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 329 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 388

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 389 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 448

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +   +  
Sbjct: 449 EEQLGTEIKPIPSSIDK 465


>gi|237720587|ref|ZP_04551068.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4]
 gi|293373374|ref|ZP_06619730.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CMC
           3f]
 gi|229450338|gb|EEO56129.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4]
 gi|292631660|gb|EFF50282.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CMC
           3f]
          Length = 644

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 136/368 (36%), Positives = 219/368 (59%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP+L
Sbjct: 3   TFEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++    + R+P++LIL PTREL  Q+A +   Y K  +    L + G    ++Q + L
Sbjct: 63  QQVDV---KNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD   R  + ++ I  +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KRGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILADVPQERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+N+L+N K I +   +   E+  +     Y   +K      + +
Sbjct: 180 TLLFSATMSPEIARISKNYLRNAKEITIGRKN---ESTNNVKHVVYTVQAKDKYEALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+
Sbjct: 237 VDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRE 356

Query: 360 IEKLIEKK 367
           IE++I KK
Sbjct: 357 IERIISKK 364


>gi|162149460|ref|YP_001603921.1| ATP-dependent RNA helicase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161788037|emb|CAP57641.1| putative ATP-dependent RNA helicase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 429

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 144/370 (38%), Positives = 222/370 (60%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FADL L+P ++ A+ + GY  PTPIQ ++IP++L+  D+ G+AQTGTGKTA+F LP+L
Sbjct: 5   MTFADLSLAPTLLRALAEEGYANPTPIQAQSIPMLLEGRDLLGMAQTGTGKTAAFALPLL 64

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L               +L PTREL +Q+AD F  +G++   +V  + GG+    Q   
Sbjct: 65  HRLAMAPRPAPKGGARVLVLAPTRELVSQIADGFTSFGRHQPPSVTTIFGGVSQFHQVNA 124

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+++  PGR+LD  ++G   ++ +E LV+DEAD+MLDMGF   I+ I + +P  R
Sbjct: 125 LKAGVDIIVAAPGRLLDLIDQGLCDLSQLEALVLDEADQMLDMGFARPIERIVATLPKDR 184

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            T+LFSATM   +  ++E+ L++P ++E+  PS+T + IE   +   A   K        
Sbjct: 185 HTVLFSATMPKSIAALAESLLRDPAKVEIAPPSTTVDRIEQSVMFVDAADKKAA---LLS 241

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   ++F  QK     +C  + + G +  A+HGN  Q  R + L  F+ GT Q+
Sbjct: 242 MLRTPGIGQAVVFTLQKNIANEVCAFITEAGITAEALHGNKSQGQRERALDAFRAGTAQV 301

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  V HVFN D+P+  E+Y+HRIGRTGRAGR+G A TL   E    + 
Sbjct: 302 LVATDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTGRAGRNGFAITLCDAEQRAWLR 361

Query: 359 AIEKLIEKKV 368
            +E+ I + +
Sbjct: 362 DVEREIGRAL 371


>gi|158294036|ref|XP_315363.4| AGAP005351-PA [Anopheles gambiae str. PEST]
 gi|157015378|gb|EAA11336.4| AGAP005351-PA [Anopheles gambiae str. PEST]
          Length = 640

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 116/392 (29%), Positives = 184/392 (46%), Gaps = 23/392 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
            F + G   +++  +  AG+  PTPIQ +  P+ L   D+ GIA+TG+GKT S+++P  +
Sbjct: 86  TFEESGFPAEIIDELRYAGFTTPTPIQAQGWPIALSGRDMVGIAKTGSGKTLSYLIPALI 145

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +    R   P  LIL PTRELA Q+    + +G+        L GG     Q   L
Sbjct: 146 HIDQQPRLRRGDGPIALILAPTRELAQQIKQVADDFGRALKYKNTCLFGGGKKRKQQDDL 205

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G +++I TPGR++D  +  +  +     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 206 EYGVEIVIATPGRLIDFLSSNQTNLRRCSYLVLDEADRMLDMGFEPQIRTIIEQIRPDRQ 265

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQL 238
           TL++SAT  D + ++ +++L++  +I V +    A       +    +Y K+    +   
Sbjct: 266 TLMWSATWPDIVARLVKDYLKDYAQINVGSLKLAANHNILQIIDVCQEYEKESKLSILLR 325

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               +     IIF   KK V ++   +++ G+    IHG+  Q                 
Sbjct: 326 EIMAEKECKTIIFIETKKRVDDITRKVKRDGWPARCIHGDKSQN---------------- 369

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
               +  A    + DV  V NFD P  +E+YIHRIGRTGR    G A+T     +     
Sbjct: 370 ----ERDATLNYVDDVKFVINFDFPTTSEDYIHRIGRTGRCNNTGTAYTFFTPNNASKAR 425

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
            +  ++++    +N  L  L     K    +H
Sbjct: 426 DLIDVLKEAKQVINPKLVELASMKVKGKGNRH 457


>gi|149279609|ref|ZP_01885738.1| ATP-dependent RNA helicase [Pedobacter sp. BAL39]
 gi|149229645|gb|EDM35035.1| ATP-dependent RNA helicase [Pedobacter sp. BAL39]
          Length = 620

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 223/367 (60%), Gaps = 8/367 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61
           F  LG+S  VV AV D G+  PTPIQ ++IP++L+ + D  G+AQTGTGKTA+F LP+L 
Sbjct: 5   FKLLGISDDVVNAVKDLGFENPTPIQEQSIPVLLEGNNDFVGLAQTGTGKTAAFGLPLLE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKLE 120
           +++    +   P+ LIL PTREL  Q+ ++ + + KN +    + + G      Q +++ 
Sbjct: 65  LIDF---KSNKPQALILCPTRELCLQITNDIKNFSKNTSGANVVAVYGGANIMQQLREIR 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGR+LD   R  +   N++ +V+DEAD ML+MGF   I +I S  P  ++T
Sbjct: 122 NGVQIVVATPGRMLDIIGRKAIDFTNVKYVVLDEADEMLNMGFQEDINDILSTTPDDKKT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E++++++N++ +P  + + T ++      +     Y   ++      + + 
Sbjct: 182 WLFSATMPPEVRRIAKNYMDSPVELTMGTKNTGN---VNIEHEYYTVRARDKYAALKRIV 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +    G++FC  K +  ++   L K G++  A+HG++ Q+ R K++  F++  +QL++
Sbjct: 239 DFNPEIFGVVFCKTKMDTQDVAEHLIKDGYNADALHGDLSQQQRDKVMQRFRDRHMQLLI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ +V HV N+ +P+  E+Y HR GRTGRAG+ G +  +V  ++I  I  I
Sbjct: 299 ATDVAARGIDVNNVTHVINYSLPDEIESYTHRSGRTGRAGKTGISICIVNSKEIGKIRQI 358

Query: 361 EKLIEKK 367
           E++I K+
Sbjct: 359 ERIIGKQ 365


>gi|226531524|ref|NP_001148960.1| ATP-dependent RNA helicase dhh1 [Zea mays]
 gi|195623636|gb|ACG33648.1| ATP-dependent RNA helicase dhh1 [Zea mays]
          Length = 517

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 112/375 (29%), Positives = 195/375 (52%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 144 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 203

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++        + +IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 204 KIDQ---EKNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRLYQ 260

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILD   +G  ++ +  +L++DEAD++L   F P I+ +   +P +RQ L
Sbjct: 261 PVHLIVGTPGRILDLTKKGVCILKDCSMLIMDEADKLLSPEFQPSIEQLIRYLPASRQIL 320

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +++  + +L  P  I          T++           ++       L S
Sbjct: 321 MFSATFPVTVKEFKDKYLPKPYVI----NLMDELTLKGITQFYAFVEERQKVHCLNTLFS 376

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 377 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 436

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 437 TDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 496

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 497 QELGTEIKPIPPQID 511


>gi|195614632|gb|ACG29146.1| ATP-dependent RNA helicase dhh1 [Zea mays]
          Length = 517

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 112/375 (29%), Positives = 195/375 (52%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 144 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 203

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++        + +IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 204 KIDQ---EKNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRLYQ 260

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILD   +G  ++ +  +L++DEAD++L   F P I+ +   +P +RQ L
Sbjct: 261 PVHLIVGTPGRILDLTKKGVCILKDCSMLIMDEADKLLSPEFQPSIEQLIRYLPASRQIL 320

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +++  + +L  P  I          T++           ++       L S
Sbjct: 321 MFSATFPVTVKEFKDKYLPKPYVI----NLMDELTLKGITQFYAFVEERQKVHCLNTLFS 376

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 377 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 436

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 437 TDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 496

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 497 QELGTEIKPIPPQID 511


>gi|330923108|ref|XP_003300102.1| hypothetical protein PTT_11258 [Pyrenophora teres f. teres 0-1]
 gi|311325897|gb|EFQ91780.1| hypothetical protein PTT_11258 [Pyrenophora teres f. teres 0-1]
          Length = 516

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 133/400 (33%), Positives = 211/400 (52%), Gaps = 7/400 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+  ++  A  +  +  PTPIQ + IPL L+  DV G+A+TG+GKTA+FVLP+L 
Sbjct: 87  TFADLGIREELCDACENLKFKNPTPIQTQAIPLALEGRDVIGLAETGSGKTAAFVLPILQ 146

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    LIL PTRELA Q+A   +  G   N+  A L+GG+    Q   L +
Sbjct: 147 SL---LEKPQPLFGLILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSK 203

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +    N     + +++ +V+DEADR+LD+ F P +  I  ++P   + 
Sbjct: 204 RPHIVVATPGRLLDHLENTKGFSLKHLKYMVLDEADRLLDLDFGPVLDKILKVLPREGRH 263

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSATM+ +++ +    LQNP R+ +++ S    +      A      K        L
Sbjct: 264 TYLFSATMSSKVENLQRAALQNPVRVSISSSSHQVVSTLLQRYAFIPHKYKDL--YLIHL 321

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +     IIF         +   L   GF    +HG + Q +R+  L+ FK  +  ++
Sbjct: 322 LNDNIGHPTIIFTRTVNETQRIAVLLRALGFGAIPLHGQLSQSARLGALNKFKSKSRDIL 381

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  + NFD+P+ ++ Y+HR+GRT RAG+ GKA + V + D++    
Sbjct: 382 VATDVAARGLDIPAVDLIVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQYDLEIWLR 441

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           IE  + KK+     D       ++++  AQ    R+   I
Sbjct: 442 IEHALGKKIPEQTFDKDEAMVYMDRVSEAQRVAIREMKDI 481


>gi|302785159|ref|XP_002974351.1| hypothetical protein SELMODRAFT_149865 [Selaginella moellendorffii]
 gi|300157949|gb|EFJ24573.1| hypothetical protein SELMODRAFT_149865 [Selaginella moellendorffii]
          Length = 523

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 116/390 (29%), Positives = 195/390 (50%), Gaps = 15/390 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + G+ P+++ AV +AGY KPTPIQ+ +IPL LQ+ DV GIA TG+GKTA+FV+PML 
Sbjct: 115 NWEESGICPEILRAVQEAGYKKPTPIQMASIPLGLQQRDVIGIAGTGSGKTAAFVIPMLM 174

Query: 62  I-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                        +  P  L++ PT ELA Q+ +   K  K  ++ V  L+ G     Q+
Sbjct: 175 YVSRLPKMTLERAIEGPYALVMAPTTELAQQIQEETVKLAKYMDINVLSLVAGEAIGGQS 234

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS-LVP 175
            KL +G +++I TPGR+L    +G  +++    +V+DE DRM+ +GF   + +    +  
Sbjct: 235 SKLLQGCEIVIATPGRLLHCLEQGYAVLHQCNYVVLDEGDRMIALGFEEQVIDALEAMPS 294

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPK---------RIEVNTPSSTAETIEHCFVATYA 226
              +       + D + + +  F               +      +  E  +        
Sbjct: 295 SNMKPESEDVELEDRIYRTTYMFSATMPPAVERLAKKYLRNPVVVTIEEMSKRISQKVMM 354

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              ++     + L  +    + I+F N KK    +   L   G  V  IHG   Q+ R  
Sbjct: 355 VDEEEKPKRLRRLLDELGEMSTIVFVNTKKQADKVSKQLHDMGIKVATIHGGKTQQKRQT 414

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
              +F+      ++A+D+  RG+D+PDVGH+ N+D+P+  E YIHRIGRTGRAG+ G A 
Sbjct: 415 NFQDFRSKRRSCLIATDVVGRGIDVPDVGHIVNYDMPSTVEMYIHRIGRTGRAGKSGAAT 474

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
           T +   D +    +++L+ +  + +  +L+
Sbjct: 475 TFLTLNDSEVFYDLKQLLVRTKNPVPPELA 504


>gi|218131753|ref|ZP_03460557.1| hypothetical protein BACEGG_03374 [Bacteroides eggerthii DSM 20697]
 gi|217986056|gb|EEC52395.1| hypothetical protein BACEGG_03374 [Bacteroides eggerthii DSM 20697]
          Length = 644

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 137/385 (35%), Positives = 225/385 (58%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++
Sbjct: 3   TFEELGVSPEIRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             +       R+P++LIL PTREL  Q+A +   Y K  +    L + G    E+Q + L
Sbjct: 63  QQINVNN---RIPQSLILCPTRELCLQIAGDLNDYSKYIDGLRVLPVYGGSSIESQIRAL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD   R  + ++ I+ +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KRGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILADVPQERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+ +L N K I +   +   E+  +     +  ++K      + +
Sbjct: 180 TLLFSATMSPEIARISKKYLHNAKEITIGRKN---ESTSNVKHVVFTVHAKDKYAALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+
Sbjct: 237 VDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRE 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE++I KK  ++ G++ +     EK
Sbjct: 357 IERIIGKK--FIQGEMPTGKQICEK 379


>gi|323455619|gb|EGB11487.1| hypothetical protein AURANDRAFT_52587 [Aureococcus anophagefferens]
          Length = 418

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 114/375 (30%), Positives = 187/375 (49%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+P+Q + IP++LQ  +V   A+ GTGKTA+F++P   
Sbjct: 45  EFEDYFLKRELLMGIFEKGFERPSPVQERAIPIILQNRNVLARAKNGTGKTAAFIIP--- 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            LEK     +  + LIL PTRELA Q +    + GK+  +   +  GG   +    +L +
Sbjct: 102 CLEKTDPSKKFIQVLILIPTRELALQTSAVVRELGKHMKVECMVSTGGTSLKDDIMRLYK 161

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL+ TPGRILD   +G   +     +++DEAD++L   F P ++ +       RQ  
Sbjct: 162 PVHVLVGTPGRILDLSEKGVAALGRCHTVIMDEADKLLSPEFEPLLEKLVHHCSPERQIC 221

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++   E F+ NP  I          T++           ++       L +
Sbjct: 222 LFSATFPVTVKNFKEKFIHNPYEI----NLMDDLTLKGITQFYAFVEERQKVHCLHTLFT 277

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   +IFCN    V  L   + + G+S   IH  + Q  R ++   F+ G+ + +V+
Sbjct: 278 KLEINQSVIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGSTRHLVS 337

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR GR G  G A  L+  +D  ++  IE
Sbjct: 338 SDLFTRGIDIQSVNVVINFDFPKTSETYLHRIGRAGRFGHLGLAVNLITFDDRFNLYRIE 397

Query: 362 KLIEKKVDWLNGDLS 376
             +  ++  +   + 
Sbjct: 398 SELATEIKPIPPTIE 412


>gi|319651055|ref|ZP_08005189.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
 gi|317397225|gb|EFV77929.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
          Length = 481

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 131/363 (36%), Positives = 214/363 (58%), Gaps = 6/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  +S ++  A+    Y  PT +Q + IPL ++  D+   AQTG+GKTASF +P+  
Sbjct: 5   SFADFHVSEEIKRALAVLKYETPTEVQSEVIPLAMKNQDLVVKAQTGSGKTASFGIPVSD 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ +IL PTRELA QV ++    G+   +    + G  PF  Q  +L++
Sbjct: 65  MVEWEEKK---PQAIILTPTRELAVQVREDITNIGRFKRIKAVAVYGKEPFSKQKDELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR++DH  R  L+++ I+ L+IDEAD ML+ GFI  ++ I   +P  R T+
Sbjct: 122 KTHVVVGTPGRVMDHIERETLILDQIKYLIIDEADEMLNRGFIDEVEAIIKELPSNRVTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +++ +   ++++P +I++ +   TA+TIEH   +      ++   L + +  
Sbjct: 182 VFSATLPKDVENLCHKYMKDPIQIKIESTKVTADTIEH---SLIEVREEEKISLLKDVTV 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + +IFC  K++V  +   L+K G+    +HG ++Q  R  ++  FK G  + +VA
Sbjct: 239 VENPDSCLIFCRTKEHVDTVYSELDKAGYPCERLHGGLEQEDRFSVMEGFKLGNFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI +V  V N+DVP   E+Y+HR GRTGRAG  GKA T     + K I AIE
Sbjct: 299 TDVAARGIDIDNVTLVINYDVPMEKESYVHRTGRTGRAGNKGKAITFSTPFEGKFIKAIE 358

Query: 362 KLI 364
           + I
Sbjct: 359 RYI 361


>gi|195441137|ref|XP_002068383.1| GK13754 [Drosophila willistoni]
 gi|194164468|gb|EDW79369.1| GK13754 [Drosophila willistoni]
          Length = 839

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 136/418 (32%), Positives = 216/418 (51%), Gaps = 4/418 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
            F   G   +++ AV  A Y +PT IQ + +P  L   D+ GIA+TG+GKTA+F+ P  M
Sbjct: 302 SFGHFGFDDQLIKAVRKAEYTQPTSIQAQAVPCALAGRDIIGIAKTGSGKTAAFIWPLLM 361

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + ++       P  LIL PTREL+ Q+ +  +++GK YNL V    GG     Q+K L
Sbjct: 362 HLMDQRELKAGEGPIGLILAPTRELSLQIYNEAKRFGKVYNLRVVCCYGGGSKWEQSKAL 421

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+GA++++ TPGR++D        +  +  LV+DEADRM  MGF P +++I   V   RQ
Sbjct: 422 EQGAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICQHVRPDRQ 481

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    +++++ + L +P RI     +   + +            K   LL  L+
Sbjct: 482 TLLFSATFKRRIERLARDVLTDPIRIVQGELNEANQDVTQAVYVLPNPQQKWNWLLCHLV 541

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +      + +IF  +K +   + H L  + F+   +HG++DQ  R K++  FK     ++
Sbjct: 542 KFLAEG-SCLIFVTKKADAETVAHQLLVKEFNCLLLHGDMDQADRNKVIMQFKRKECDIL 600

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDIP + +V N+D+    + + HRIGRTGRAG  G A TLV ++D +    
Sbjct: 601 IATDVAARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAHTLVTEKDKEFAGH 660

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK-STGFDRRKKNYSSQ 416
           + + +E     +  DL  L         ++    +     P     G+  R     S 
Sbjct: 661 LVRNLEGADQPVPSDLLELAMKSSWFRSSRFKQGKGKKVTPTHVGLGYRERGGGNPSN 718


>gi|156554534|ref|XP_001605420.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 775

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 142/443 (32%), Positives = 230/443 (51%), Gaps = 13/443 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +      V+  +   G+++PT IQ +  P+ L   D+ GIAQTG+GKT +++LP    
Sbjct: 113 FEESNFPDYVMEEIRKQGFLEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPATVH 172

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA Q+      +G +  +    + GG P   Q + LE
Sbjct: 173 INNQPRLSRGDGPIVLVLAPTRELAQQIQSVARDFGSSSCIRNTCIFGGSPKGPQARDLE 232

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 233 RGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 292

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLL 239
           L++SAT   E+Q ++E+FL +  +I + + +  A       +    ++ K+    +    
Sbjct: 293 LMWSATWPKEVQALAEDFLTDYIQINIGSLNLAANHNIRQIIEICQEHEKENKLAVLLRE 352

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   KK V ++  ++++ G+   AIHG+  Q  R  +LS F+ G   ++
Sbjct: 353 IGCERGNKTIIFVETKKKVDDITKAIKRNGWPAIAIHGDKSQPERDYVLSEFRNGKTAIL 412

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV +V NFD PN +E+YIHRIGRTGR    G A+      + +    
Sbjct: 413 VATDVAARGLDVEDVKYVVNFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNNARQAKE 472

Query: 360 IEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQH--NHAR------KNNPIPQKSTGFDRRK 410
           +  ++E+    +N  L+ + N    +   A+   N  R      K+N +   S   +R  
Sbjct: 473 LISVLEEAGQIINPQLAEMANSQRNQYGKARQRWNQGRGNANNMKDNQMGNSSPRNNRSS 532

Query: 411 KNYSSQKSHIPLKESEKISKLQQ 433
            N+++ +SH    ++ K+S++  
Sbjct: 533 PNHNNWQSHFN-HQNHKLSQMAN 554


>gi|143456931|sp|Q6H7S2|RH8_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 8
 gi|49388093|dbj|BAD25226.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|215701408|dbj|BAG92832.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222623328|gb|EEE57460.1| hypothetical protein OsJ_07688 [Oryza sativa Japonica Group]
          Length = 508

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 113/375 (30%), Positives = 195/375 (52%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 135 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 194

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++        + +IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 195 KIDQ---EKNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIIRLYQ 251

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +L++DEAD++L   F P ++ +   +P +RQ L
Sbjct: 252 PVHLLVGTPGRILDLTKKGICILKDCSMLIMDEADKLLSPEFQPSVEQLIRYLPASRQIL 311

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +++  + +L  P  I          T++           ++       L S
Sbjct: 312 MFSATFPVTVKEFKDKYLPKPYVI----NLMDELTLKGITQFYAFVEERQKVHCLNTLFS 367

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 368 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 427

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 428 TDLFTRGIDIQAVNVVINFDFPKTAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 487

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 488 QELGTEIKPIPPQID 502


>gi|115447545|ref|NP_001047552.1| Os02g0641800 [Oryza sativa Japonica Group]
 gi|49388094|dbj|BAD25227.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|113537083|dbj|BAF09466.1| Os02g0641800 [Oryza sativa Japonica Group]
 gi|218191254|gb|EEC73681.1| hypothetical protein OsI_08237 [Oryza sativa Indica Group]
          Length = 483

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 113/375 (30%), Positives = 195/375 (52%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 110 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 169

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++        + +IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 170 KIDQ---EKNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIIRLYQ 226

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +L++DEAD++L   F P ++ +   +P +RQ L
Sbjct: 227 PVHLLVGTPGRILDLTKKGICILKDCSMLIMDEADKLLSPEFQPSVEQLIRYLPASRQIL 286

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +++  + +L  P  I          T++           ++       L S
Sbjct: 287 MFSATFPVTVKEFKDKYLPKPYVI----NLMDELTLKGITQFYAFVEERQKVHCLNTLFS 342

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 343 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 402

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 403 TDLFTRGIDIQAVNVVINFDFPKTAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 462

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 463 QELGTEIKPIPPQID 477


>gi|328955216|ref|YP_004372549.1| DEAD/DEAH box helicase domain protein [Coriobacterium glomerans
           PW2]
 gi|328455540|gb|AEB06734.1| DEAD/DEAH box helicase domain protein [Coriobacterium glomerans
           PW2]
          Length = 618

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 160/477 (33%), Positives = 244/477 (51%), Gaps = 29/477 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV    Y  PTP+Q  +IP VL + D+   AQTGTGKTA+F+LP ++ 
Sbjct: 59  FEDLGLPDIILKAVRGLHYTTPTPVQAASIPSVLAKRDILAAAQTGTGKTAAFLLPAMSN 118

Query: 63  LEKGRARVRM--------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           L     + R         P+ LI+ PTRELA Q+     +           ++GG+ +  
Sbjct: 119 LGHVVHQGRSRRSAEGRGPKMLIITPTRELAQQIDSVCTQIATRTKHIAVTVVGGVGYNP 178

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L RG D+L+ TPGR++D  ++G   ++ +EILVIDEADRMLDMGF+P ++ I +L 
Sbjct: 179 QKSALRRGCDILVATPGRLIDLIDQGVCNLSEVEILVIDEADRMLDMGFLPSVKQIVALT 238

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQTLLFSAT+ ++      + +++P R+E+   +STA+T++   +           +
Sbjct: 239 PPERQTLLFSATLDEKTLGSIRDLVRDPVRVEIAAATSTADTVDQFVLPVSFDSKNDVLV 298

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
                  ++     I+F   K    + C  L   G S  AIHG+  Q  R + L  F++G
Sbjct: 299 EVL---KREGASRVIVFMRTKHRADSCCRRLTHAGISAAAIHGDRSQAQRERALKAFRDG 355

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+ ARG+DI DV +V NFDVP    +YIHRIGRTGRAG  G A T V ++DI
Sbjct: 356 RSDVLVATDVIARGIDISDVRYVVNFDVPGEPIDYIHRIGRTGRAGEVGWALTFVTRQDI 415

Query: 355 KHIDAIEKLIEKKVDWLN-------GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
                IE L+ K  +  +       G+   ++P  E++ +A+    R      +      
Sbjct: 416 DEFYDIESLMGKTAEIYDAQGIDVGGNAPVIDP--ERVPLARGGRRRTKRSRSRSGAKTQ 473

Query: 408 RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
           R ++   S +   P + SE   K     +  ++         P    PK  G+   +
Sbjct: 474 RSRRG--SSEESRPRRRSESAGKAASVGEHRESAQ-------PRPSRPKRPGRARVR 521


>gi|182415515|ref|YP_001820581.1| DEAD/DEAH box helicase domain-containing protein [Opitutus terrae
           PB90-1]
 gi|177842729|gb|ACB76981.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
          Length = 594

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 142/382 (37%), Positives = 217/382 (56%), Gaps = 9/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLSP+++ AV   G+ +  PIQ   IP VL   DV G++ TG+GKT +F +P L  
Sbjct: 6   FAELGLSPEILRAVDKMGFEEAAPIQAAVIPTVLGGRDVVGVSSTGSGKTVAFAIPALER 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    ++R  + L+L PTRELA QVA+      +     + + I  G  +E Q + L  
Sbjct: 66  VDP---KLRAVQVLVLCPTRELAVQVAEEMGHLAQFKRGIMGVPIYGGQSYERQYRALAA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G+ V+I TPGR++DH  RG L +  ++++V+DEADRMLDMGF   I+ I S VP  RQ L
Sbjct: 123 GSQVVIGTPGRVMDHMERGTLKLGALKLVVLDEADRMLDMGFREDIEKILSAVPVPRQLL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   +    E   +  +        + A+         +    +        L  
Sbjct: 183 FFSATMPRPI---QELIKRTARDPAWIKIEAVAQNAPQVEQIYFEVDRRSKLEALTRLID 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               + GI+FC+ K  V +L   L  +G++V  +HG++ Q  R +++  F+    + ++A
Sbjct: 240 VHDFRYGIVFCSTKVMVDDLDEHLHARGYAVDRLHGDLSQTQRDRVMDKFRRRGFEFLIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ D+  VFN+D+PN AE+Y HRIGRTGRAG+ G+AFT V+ ++I  + A+ 
Sbjct: 300 TDVAARGLDVDDLEVVFNYDLPNDAEDYTHRIGRTGRAGKSGRAFTFVSGQEIYKLQAMV 359

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
           +    K+D   G L SL+   E
Sbjct: 360 RW--AKLDLRRGRLPSLDEVEE 379


>gi|303256630|ref|ZP_07342644.1| putative ATP-dependent RNA helicase [Burkholderiales bacterium
           1_1_47]
 gi|302860121|gb|EFL83198.1| putative ATP-dependent RNA helicase [Burkholderiales bacterium
           1_1_47]
          Length = 423

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 154/419 (36%), Positives = 227/419 (54%), Gaps = 6/419 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG +P++   +   G+  PTPIQ+K IPLV Q +D+   AQTGTGKTA+FVLPML 
Sbjct: 4   SFKTLGFAPQLEKLIEVNGFTSPTPIQMKAIPLVRQGYDLLAAAQTGTGKTAAFVLPMLQ 63

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            + +     + R+PR L+L PTRELAAQV +     GK+  +  A++ GG+    Q   +
Sbjct: 64  KIIEEPTLYQKRVPRVLVLTPTRELAAQVGETILSLGKDLGVRSAVVFGGVGINPQKAAI 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D L+ TPGR+LD  N+G   ++   IL++DEADRMLDMGF+P ++ I   +P  RQ
Sbjct: 124 AKGLDFLVATPGRLLDLMNQGFADLSKTHILILDEADRMLDMGFLPDLKRILKALPPDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT + E++K++  FL        +      +         Y         + + L
Sbjct: 184 TLLFSATFSPEIKKLASEFLN----KPESVEIERNKDSSLVRQTLYRVPKADKHTVLRDL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     ++F   K     L   L K G    AIHG+  Q +R   L  FKE  + ++
Sbjct: 240 IVDNQWDQVLVFTRTKYGADKLVRHLLKDGLVAKAIHGDKSQNARTTALREFKEHKLPIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+++P +AE+Y+HRIGRTGRAG  G+A++LV+ E++  + A
Sbjct: 300 VATDIAARGLDIEKLPQVVNYELPQQAEDYVHRIGRTGRAGEAGEAYSLVSPEELPQLAA 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           IEK I+K +   +      +           N  R+  P      GF R     S ++ 
Sbjct: 360 IEKFIKKPLPLSDFPRLDYSDWKVSAPTKPQNKNRRPGPRRNGPAGFKRSDGKPSVRRR 418


>gi|262370602|ref|ZP_06063927.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262314402|gb|EEY95444.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 640

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 141/461 (30%), Positives = 231/461 (50%), Gaps = 12/461 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            FAD  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP   
Sbjct: 4   TFADFPLHESLQQALQSLGFTAPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLN 63

Query: 59  ------MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                      ++    +  P  L+L PTRELA QV+ +   + ++        I G   
Sbjct: 64  ALAAQETFVPFKERMKAITQPNILVLCPTRELAQQVSQDAIGFVRHMKGARIAAIMGGMP 123

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             +  +  +GA V++ TPGR+LD  NR ++ ++ ++ L++DEADRMLD+GF   ++ I+ 
Sbjct: 124 FGKQIQQLKGAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEADRMLDLGFSEDLEAISD 183

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L    +QTL+FSAT    +  ++E  + +P+RI + T  ST   I      T     K  
Sbjct: 184 LAANRKQTLMFSATFAGRIITLAERMMNDPQRIAIETGHSTNTDITQTLHWTDGFEHK-- 241

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L     S + +   ++F + +++   L   L + G SV A+HG + Q  R + L + +
Sbjct: 242 KKLLTHWLSAEDVDQAVVFASTQEDTDMLAEELAEAGLSVVALHGAMPQTVRNRRLRSIR 301

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR GKA TL    
Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGKAITLATYR 361

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           +   I A+E  ++ +++    +    +PP  +         R          G       
Sbjct: 362 ERGKIRALEDFLDARLNVSEIEGLEPSPPPARGSRDGGGRGRDGRGRDGGGRGRGGFGGR 421

Query: 413 YSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFM 453
               ++    + + K  +   D      D    RG+ P+F 
Sbjct: 422 DGGGRARFEGESNFKRREGGDDRPRRSYDDK-PRGDRPSFG 461


>gi|296170155|ref|ZP_06851752.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295895181|gb|EFG74896.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 566

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 141/379 (37%), Positives = 215/379 (56%), Gaps = 9/379 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL + P V+ A+ D GY  PT IQ  TIP ++   DV G+AQTGTGKTA+F +P+L+
Sbjct: 14  TFADLQIHPSVLRAIADVGYESPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILS 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++      +    L+L PTRELA QVA+ F +YG +      L I  G  +  Q   L 
Sbjct: 74  KIDVASKATQ---ALVLAPTRELALQVAEAFSRYGAHLPKVNVLPIYGGSSYTVQLAGLR 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  RG L +++++ LV+DEAD ML MGF   +  I S  P  +Q 
Sbjct: 131 RGAQVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQV 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++K++  +L +P  +     ++TAE I   ++                ++
Sbjct: 191 ALFSATMPPAIRKLTTKYLHDPLEVSTKAKTATAENISQRYIQVAGPRKMDALTRVLEVE 250

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + M   +      + V     +   +GFS  AI+G+I Q  R + ++  K+G I ++V
Sbjct: 251 PFEAMIVFVRTKQATEEVAERLRA---RGFSAAAINGDIPQGQRERTVAALKDGGIDILV 307

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  +   + AI
Sbjct: 308 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLRAI 367

Query: 361 EKLIEKKVDWLNGDLSSLN 379
           EK   + +  +  +L ++ 
Sbjct: 368 EKATRQTL--IEAELPTVE 384


>gi|159469610|ref|XP_001692956.1| pre-mRNA-splicing ATP-dependent RNA helicase [Chlamydomonas
           reinhardtii]
 gi|158277758|gb|EDP03525.1| pre-mRNA-splicing ATP-dependent RNA helicase [Chlamydomonas
           reinhardtii]
          Length = 571

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 131/427 (30%), Positives = 212/427 (49%), Gaps = 32/427 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            + + GL   ++ A+   GY KP+PIQ+  IPL L++ DV GIA+TG+GKTA+FVLP   
Sbjct: 153 KWEESGLPSLLLKAIEKVGYKKPSPIQMAAIPLGLKQRDVIGIAETGSGKTAAFVLPMLA 212

Query: 59  --MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             M             P  ++L PTRELA Q+ +   K        V  ++GG   E Q 
Sbjct: 213 YIMRQPPMNEENEADGPYAVVLAPTRELAQQIEEETHKLAHYTGYRVTSVVGGQSIEEQG 272

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            KL +G +++I TPGR+LD  +R   ++N    +V+DEADRM+D+GF P +  +   +P 
Sbjct: 273 TKLRKGCEIVIATPGRLLDCIDRHYAVLNQCNYVVLDEADRMIDLGFEPQVIGVLDAMPK 332

Query: 177 -----------------TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
                             R T +FSATM   ++++++ +    +R  V    S     ++
Sbjct: 333 STLKPDEEGAVLEENRTYRTTYMFSATMPPAVERLAKKY---LRRPVVVVIGSAGRVTDN 389

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                +     +   L +   +    K  I+F N ++   N+   +++ G+    +HG  
Sbjct: 390 VTQRVFVVKENEKGRLLEQELNNVDEKRVIVFVNTQRQCDNVHRHMDELGYHCTILHGGK 449

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q  R   +  F++GT  +++A+D+A RG+D+PDV  V N+D+P   ENY HRIGRTGRA
Sbjct: 450 TQDQREAGIKGFRDGTYNVLIATDVAGRGIDVPDVALVVNYDMPTNIENYTHRIGRTGRA 509

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           GR G A T +   D      ++KL+E          +++ P L + + ++          
Sbjct: 510 GRKGIAVTFLTLGDTGVFFDLKKLLE-------DSKAAVPPELARHEASKVKPGTVEAKS 562

Query: 400 PQKSTGF 406
            +  T F
Sbjct: 563 RKDQTVF 569


>gi|329956340|ref|ZP_08296937.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
 gi|328524237|gb|EGF51307.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
          Length = 645

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 138/385 (35%), Positives = 224/385 (58%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++
Sbjct: 3   TFEELGVSPEIRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             +       R+P++LIL PTREL  Q+A +   Y K  +    L + G    E+Q + L
Sbjct: 63  QQINVNN---RIPQSLILCPTRELCLQIAGDLNDYSKYIDGLRVLPVYGGSSIESQIRAL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD   R  + ++ I+ +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KRGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILADVPQERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+ +L N K I +   +   E   +     +  ++K      + +
Sbjct: 180 TLLFSATMSPEIARISKKYLHNAKEITIGRKN---EGTNNVKHVVFTVHAKDKYAALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L ++G++  A+HG + Q  R  ++  F+   +QL+
Sbjct: 237 VDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADALHGELSQAQRDAVMQKFRIRNLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRE 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE++I KK  ++ G++ +     EK
Sbjct: 357 IERIIGKK--FIQGEMPTGKQICEK 379


>gi|322502866|emb|CBZ37948.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 405

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 115/377 (30%), Positives = 194/377 (51%), Gaps = 8/377 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +  L  ++   + + G+ KP+P+Q + IP+ LQ  DV   A+ GTGKTASFV+P+L
Sbjct: 30  VNFEEYALRRELQMGIFEKGFEKPSPVQEEAIPVALQGKDVLARAKNGTGKTASFVIPVL 89

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKL 119
             ++    R    + L++ PTRELA Q A   ++ GK+     V +  GG        +L
Sbjct: 90  EKVDT---RESYVQALLMVPTRELALQTAQVTKELGKHIPGLEVMVTTGGTTLRDDILRL 146

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LD  ++  + +++  ILV+DEAD++L   F+  I ++ + +P   Q
Sbjct: 147 TSKVHILVATPGRVLDLASKKAVDLSHCHILVLDEADKLLSQEFMEIIDDLYTYLPSQLQ 206

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           ++LFSAT    ++     F +               T++           ++       L
Sbjct: 207 SMLFSATFPVTVKT----FAERHLHNPYEINLMDELTLKGVTQYYAFVEERQKIHCLNTL 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++  +   IIFCN    V  L   + + G+S   IH  + Q+ R ++  +F+EG  + +
Sbjct: 263 FNKLQINQSIIFCNSVNRVELLAKKITQLGYSCYYIHARMQQQHRNRVFHDFREGHCRNL 322

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A   V  +D  ++  
Sbjct: 323 VCSDLITRGIDIQAVNVVINFDFPKYAETYLHRIGRSGRFGHLGVAINFVTYDDRYNVYR 382

Query: 360 IEKLIEKKVDWLNGDLS 376
           IE+ ++ ++  +  ++ 
Sbjct: 383 IEQELDTEIKPIPAEID 399


>gi|328952772|ref|YP_004370106.1| DEAD/DEAH box helicase domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328453096|gb|AEB08925.1| DEAD/DEAH box helicase domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 415

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 153/415 (36%), Positives = 226/415 (54%), Gaps = 15/415 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+      +V   V+ A +  PTPIQ K IPL++Q HDV G+A TGTGKTA+FVLP+L
Sbjct: 1   MEFSIFDFHHQVTAGVVAARFRTPTPIQAKAIPLIMQGHDVVGLAHTGTGKTAAFVLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +G  R    R L++ PTRELA Q+ +     G    L    + GG+ F  Q  KL+
Sbjct: 61  HRLMQGERR--QVRALVIAPTRELAQQIHEAIGTLGSRTGLRSVTIYGGVGFNPQVDKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA++++  PGR+LDH N+G + ++N+E+LV+DE+DRM DMGF+P I+ I   VP  RQT
Sbjct: 119 RGAEIVVACPGRLLDHMNQGTIDLSNLEVLVLDESDRMFDMGFLPDIRKIIKHVPTERQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D++  ++   L+ P  ++VN            +       +     L +   
Sbjct: 179 LLFSATMPDDILHLAHEVLKAPVTVQVNNIGPAINVSHRLYPIKQHLKTALLLELLR--- 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ +IF   K     L   L K G+   ++ GN+ Q  R  +++ F+ GT Q++V
Sbjct: 236 -HTNTESVLIFTRTKHRAKRLGEQLGKAGYRATSLQGNLSQGRRQAVMNGFRNGTFQILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+D+P+  + Y HRIGRTGR  + G AFT +  ED   +  I
Sbjct: 295 ATDIAARGIDVTQISHVINYDMPDTIDAYTHRIGRTGRNTKTGDAFTFITSEDEDMVRRI 354

Query: 361 EKLIEKKV--------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           E ++  +V        D+   D          +  AQ    RK    P K  G D
Sbjct: 355 ENVLRTRVRHCILDGFDYKKADALPDCKLARPLSQAQRRRERKKTE-PSKGRGKD 408


>gi|192362407|ref|YP_001982121.1| ATP-dependent RNA helicase [Cellvibrio japonicus Ueda107]
 gi|190688572|gb|ACE86250.1| ATP-dependent RNA helicase, DEAD box family [Cellvibrio japonicus
           Ueda107]
          Length = 477

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 137/376 (36%), Positives = 214/376 (56%), Gaps = 5/376 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+FA LGL+P+++ AV   G+ + TP+Q + IP   +  D+   AQTGTGKTA+F  P+L
Sbjct: 29  MNFAALGLAPELLRAVKRCGFQQLTPVQEQAIPPARRGRDLLVTAQTGTGKTAAFGFPLL 88

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +     +   T   +L PTREL  QVADN ++Y    +LT+A + GG+   +Q  K
Sbjct: 89  QQLLEKPRATQPGHTRALVLAPTRELVEQVADNLQQYAHFTSLTIAAVYGGVKHSSQANK 148

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G DVL+ TPGR+L+H   G + +  +E LV+DEADRMLDMGF+  I  + + +    
Sbjct: 149 LQAGLDVLVATPGRLLEHVELGNINLQQVEFLVLDEADRMLDMGFVGEISKLLNGMGKKP 208

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L FSAT+T  +  +++  L  P  + V+  ++ A+T+EH           +  +    
Sbjct: 209 QILFFSATLTQSVTTLAKEILARPLSVAVSKRNAVADTVEHLLYPVDQARKYELFMELLR 268

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +   +    +F + ++    L ++L++       IH    Q +R + L  FKEG +Q+
Sbjct: 269 THNWFQVM---VFSSTREEADKLINALKEDNVEGAVIHSEKTQGARRRALKEFKEGKLQV 325

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDI  + +V N D+P   E+Y+HR+GRTGRAG  G A +LV+  D   + 
Sbjct: 326 LVATEVAARGLDIQGLDYVVNLDLPFFIEDYVHRVGRTGRAGSKGIAISLVSASDEPKVA 385

Query: 359 AIEKLIEKKVDWLNGD 374
            IEK I  K+  +   
Sbjct: 386 LIEKAIGTKIKRVKIK 401


>gi|78184980|ref|YP_377415.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
 gi|78169274|gb|ABB26371.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
          Length = 624

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 133/371 (35%), Positives = 209/371 (56%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G S  ++  + D GY  P+PIQ    P ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 73  FDGFGFSEALLKTLADKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 132

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLER 121
           LE G+   + P+ L+L PTRELA QVAD+F+ Y   +     L + G   F +Q   L R
Sbjct: 133 LESGQ---KTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRR 189

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR++DH  +G L  + +  LV+DEAD ML MGFI  ++ I   +P  RQ +
Sbjct: 190 GVDVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVV 249

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++S+ +L +P  + + T     + I    +     +        Q +  
Sbjct: 250 LFSATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKLIRQRAITVPMSHK---LEALQRVLD 306

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  IIF   K   + +  +LE  G  V  ++G++ Q  R + +   + G++ ++VA
Sbjct: 307 ACGGEGVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDVLVA 366

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V N+D+P  +E Y+HRIGRTGRAGR G+A   +   + + I  +E
Sbjct: 367 TDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRERRFIRNLE 426

Query: 362 KLIEKKVDWLN 372
           +   + ++ + 
Sbjct: 427 RATGQPIEMME 437


>gi|61679843|pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
          Length = 400

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 115/376 (30%), Positives = 187/376 (49%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L  +++  + +AG+ KP+PIQ + IP+ +   D+   A+ GTGKTA+FV+P L 
Sbjct: 22  TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 81

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    ++   + LI+ PTRELA Q +      GK+  ++  +  GG        +L  
Sbjct: 82  KVKP---KLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNE 138

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD  +R    +++  + ++DEAD+ML   F   I+ I S +P T Q+L
Sbjct: 139 TVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSL 198

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++    F+                T++           ++       L S
Sbjct: 199 LFSATFPLTVKE----FMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFS 254

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   +   G+S    H  + Q+ R K+   F++G ++ +V 
Sbjct: 255 KLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVC 314

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+   D  ++  IE
Sbjct: 315 SDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIE 374

Query: 362 KLIEKKVDWLNGDLSS 377
           + +  ++  +   +  
Sbjct: 375 QELGTEIAAIPATIDK 390


>gi|6320041|ref|NP_010121.1| Dhh1p [Saccharomyces cerevisiae S288c]
 gi|729329|sp|P39517|DHH1_YEAST RecName: Full=ATP-dependent RNA helicase DHH1; AltName:
           Full=DExD/H-box helicase 1
 gi|160380644|sp|A6ZXG9|DHH1_YEAS7 RecName: Full=ATP-dependent RNA helicase DHH1; AltName:
           Full=DExD/H-box helicase 1
 gi|4353|emb|CAA46853.1| RNA-helicase of the DEAD-BOX family [Saccharomyces cerevisiae]
 gi|1061279|emb|CAA91586.1| putative RNA helicase [Saccharomyces cerevisiae]
 gi|1431254|emb|CAA98734.1| DHH1 [Saccharomyces cerevisiae]
 gi|151941843|gb|EDN60199.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
 gi|190405159|gb|EDV08426.1| hypothetical protein SCRG_00654 [Saccharomyces cerevisiae RM11-1a]
 gi|285810876|tpg|DAA11700.1| TPA: Dhh1p [Saccharomyces cerevisiae S288c]
 gi|323309886|gb|EGA63088.1| Dhh1p [Saccharomyces cerevisiae FostersO]
          Length = 506

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 115/376 (30%), Positives = 187/376 (49%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L  +++  + +AG+ KP+PIQ + IP+ +   D+   A+ GTGKTA+FV+P L 
Sbjct: 47  TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 106

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    ++   + LI+ PTRELA Q +      GK+  ++  +  GG        +L  
Sbjct: 107 KVKP---KLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNE 163

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD  +R    +++  + ++DEAD+ML   F   I+ I S +P T Q+L
Sbjct: 164 TVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSL 223

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++    F+                T++           ++       L S
Sbjct: 224 LFSATFPLTVKE----FMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFS 279

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   +   G+S    H  + Q+ R K+   F++G ++ +V 
Sbjct: 280 KLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVC 339

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+   D  ++  IE
Sbjct: 340 SDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIE 399

Query: 362 KLIEKKVDWLNGDLSS 377
           + +  ++  +   +  
Sbjct: 400 QELGTEIAAIPATIDK 415


>gi|320163628|gb|EFW40527.1| cytoplasmic DExD/H-box RNA helicase [Capsaspora owczarzaki ATCC
           30864]
          Length = 602

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 112/376 (29%), Positives = 190/376 (50%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L  +++  + + GY  P+PIQ ++IP+ L    V   A+ GTGKTA++++P+L 
Sbjct: 221 TFEDYHLKRELLMGIFEKGYENPSPIQEESIPVALAGRHVLARAKNGTGKTAAYLIPLLE 280

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++ G       + ++L PTRELA Q +   ++ GK+  + V +  GG   +    +L+ 
Sbjct: 281 MIDTG---KPHIQAVVLVPTRELALQTSQLCKELGKHMGVKVMVTTGGTSLKDDIIRLQE 337

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL+ TPGR +D   +G   +    ++V DEAD++L   F+P  + + +L+P TRQ +
Sbjct: 338 TVHVLVATPGRAVDLAQKGVANVTQARVVVFDEADKLLSPEFLPVAEQMLALLPPTRQVM 397

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    ++     F     +           T++           ++       L S
Sbjct: 398 LYSATFPVSVKD----FSDRYLKNAYEINLMEELTLKGITQYYAFVEERQKVHCLNTLFS 453

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 454 KLQINQSIIFCNSVQRVELLARKITELGYSCFYIHAKMLQSHRNRVFHDFRRGACRNLVC 513

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  IE
Sbjct: 514 SDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLITYDDRMNLLRIE 573

Query: 362 KLIEKKVDWLNGDLSS 377
           + +  ++  +   +  
Sbjct: 574 QELGAEIKPIPAVVDK 589


>gi|125556618|gb|EAZ02224.1| hypothetical protein OsI_24319 [Oryza sativa Indica Group]
          Length = 620

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 131/407 (32%), Positives = 208/407 (51%), Gaps = 18/407 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L   ++ A+   G  KPTPIQ++ +P+ L   D+ GIA TG+GKT  FVLP++ 
Sbjct: 175 SFGDLRLPEPILRALRGKGIEKPTPIQVQGLPVALSGRDMIGIAFTGSGKTLVFVLPLIM 234

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFE------KYGKNYNLTVALLIGGI 110
                 +         P  LI+ P+RELA Q  +  E             +   L IGG+
Sbjct: 235 AALQEEILMPIVPGEGPFGLIVCPSRELARQTHEVIELFLAPLMEAGYPEIRPLLCIGGV 294

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q + +++G  +++ TPGR+ D  ++ K+ ++N   L +DEADR++D+GF   I+ +
Sbjct: 295 DMRTQMEVVKKGVHIVVATPGRLKDLLSKKKMNLDNCRYLTLDEADRLVDLGFEDDIKEV 354

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM +++Q     F ++     +      A       +       +
Sbjct: 355 FDHFKAQRQTLLFSATMPEKIQN----FAKSALVKPIIVNVGRAGAANLDVIQEVEYVKE 410

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    ++FC  K +V  +   L  +G    AIHG  D   R     +
Sbjct: 411 EARIIYLLECLQKTPPPVLVFCEHKADVDYIQEFLLLKGVEAVAIHGGKDDEERKDAFKS 470

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK     ++VA+D+A++GLDIPD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 471 FKASEKDVLVATDVASKGLDIPDIQHVINYDMPAEIENYVHRIGRTGRRGKTGVATTFIN 530

Query: 351 KEDIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLE--KIDIAQHNHAR 394
           K   +  +  +++L+ +    L   L+ L+ P E  K+ IAQ +  +
Sbjct: 531 KNQTQTTLLDLKQLLIESKQRLPPILADLDDPQEDDKVAIAQQSGVK 577


>gi|91214661|ref|ZP_01251634.1| putative RNA helicase dead-box protein [Psychroflexus torquis ATCC
           700755]
 gi|91187088|gb|EAS73458.1| putative RNA helicase dead-box protein [Psychroflexus torquis ATCC
           700755]
          Length = 586

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 220/368 (59%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F  LGLSP+++ A+ D G+  P+ +Q +TIP++L+   D+  +AQTGTGKTA+F  P++
Sbjct: 3   TFESLGLSPEILRAIEDLGFESPSEVQEQTIPVLLEESTDMVALAQTGTGKTAAFGFPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKL 119
             ++    + +    LIL PTREL  Q+ +  ++Y K Y   +   + GG     Q +++
Sbjct: 63  QNIDLNSKKTQG---LILSPTRELCMQITNELKQYSKYYQNLSTVAVYGGASITDQARQI 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA +++ TPGR+ D   R  + ++NI I ++DEAD ML+MGF   I+ I S     + 
Sbjct: 120 KKGAQIIVATPGRMKDMIQRNIIDISNISICILDEADEMLNMGFFEDIKEILSHSSDQKN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM  E+  +++ F++NPK I V   + + +++ H     +    +      + +
Sbjct: 180 TWLFSATMPKEVSIIAKKFMKNPKEITVGQKNISTKSVSH---EYFIVGGRDRYSAVKRV 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     ++FC  K++   +   L + G+S  A+HG++ Q  R  ++++F+   IQ++
Sbjct: 237 VDANPDIYAVVFCRTKRDAQKVAEKLIEDGYSASALHGDLSQAQRDMVMNSFRRKQIQML 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ D+ HV N+ +P+  E Y HR GRTGRAG+ GK+  +V K +++ I  
Sbjct: 297 VATDVAARGIDVDDITHVINYQLPDEIEIYTHRSGRTGRAGKEGKSLVIVTKSEVRKIKQ 356

Query: 360 IEKLIEKK 367
           +E++I +K
Sbjct: 357 VERMIGQK 364


>gi|50312211|ref|XP_456137.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660243|sp|Q6CIV2|DBP2_KLULA RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49645273|emb|CAG98845.1| KLLA0F23716p [Kluyveromyces lactis]
          Length = 554

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 204/377 (54%), Gaps = 3/377 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ KPT IQ +  P+ L   D+ G+A TG+GKT S+ LP + 
Sbjct: 114 SFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIV 173

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      +    P  L+L PTRELA Q+     K+G +  +    + GG+P   Q + L
Sbjct: 174 HINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDL 233

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG ++LI TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 234 QRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 293

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+++++ ++L +P ++++ +   +A       V     + K+  L + L 
Sbjct: 294 TLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLE 353

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +     + II     K   +   S    +G+   AIHG+  Q  R  +L+ F+ G   +
Sbjct: 354 TASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPI 413

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARG+D+  + +V N+D+P   E+Y+HRIGRTGRAG  G A +   + +     
Sbjct: 414 MVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGSTGTAISFFTEGNKSLGA 473

Query: 359 AIEKLIEKKVDWLNGDL 375
           A+ K++ +    +  +L
Sbjct: 474 ALIKIMREAKQDIPEEL 490


>gi|156053343|ref|XP_001592598.1| hypothetical protein SS1G_06839 [Sclerotinia sclerotiorum 1980]
 gi|160419162|sp|A7ENE0|PRP5_SCLS1 RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|154704617|gb|EDO04356.1| hypothetical protein SS1G_06839 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1114

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 131/437 (29%), Positives = 216/437 (49%), Gaps = 17/437 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL  K +  +   GY KPT IQ++ IP ++   DV G+A+TG+GKT +F+LPM  
Sbjct: 484 KWSQCGLDVKSLDVIKKLGYDKPTSIQMQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFR 543

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  LI+ PTRELA Q+    + + K   L      GG   + Q   L
Sbjct: 544 HIRDQRPLKNSDGPIGLIMTPTRELATQIHKECKPFLKAMGLRAVCAYGGAIIKDQIADL 603

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR+++     +     +  +  +V+DEADRM DMGF P +  + + +  
Sbjct: 604 KRGAEIIVCTPGRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNIRP 663

Query: 177 TRQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            RQT+LFSATM   +     +      + +         E  +   V    +   +   L
Sbjct: 664 NRQTILFSATMPRIMDALAKKTLQSPVEIVVGGRSVVAPEITQIVEVREEKEKFHRLLEL 723

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L + D     +IF ++++   +L   L ++G+   +IHG  DQ  R   + +FK G 
Sbjct: 724 LGELYNADEDARTLIFVDRQEKADDLLKDLMRKGYPCMSIHGGKDQVDRDSTIDDFKAGV 783

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + +M+A+ +AARGLD+  +  V NFD PN  E+Y+HR GRTGRAG  G A T + +E  +
Sbjct: 784 VPIMIATSVAARGLDVKQLKLVVNFDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQEQ 843

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK-NNPIPQKSTGFDRRKKNYS 414
           +   I K +E+    +           E+++  + ++  K  +   ++S+GF  +     
Sbjct: 844 YSVGIAKALEQSGQEVP----------ERLNEMRKSYKDKVKSGAKKESSGFGGKGLERF 893

Query: 415 SQKSHIPLKESEKISKL 431
             +         KI KL
Sbjct: 894 DAEREATKARERKIHKL 910


>gi|146197776|dbj|BAF57607.1| DEAD box RNA helicase Me31B [Dugesia japonica]
          Length = 503

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 113/376 (30%), Positives = 183/376 (48%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L   ++  + + G+  P+PIQ  +IP+ L   D+   A+ GTGKT ++ +P+L 
Sbjct: 50  SFDDFCLKRDILKGIYEKGWEMPSPIQEASIPISLIGRDILARAKNGTGKTGAYSIPLLE 109

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +++     IL PTRELA Q +    +  K+    + +  GG   +    +L++
Sbjct: 110 KIDPSINQIQGI---ILVPTRELALQTSQICTELAKHTETKIMVTTGGTSLKDDIVRLQQ 166

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+ D   R  +  N  +ILVIDEAD++L   F   I  I S +P  RQ +
Sbjct: 167 TVHIILATPGRVNDLIKRDIVSTNFCKILVIDEADKLLSADFEEVIDYIISKLPTQRQIM 226

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    +Q+    FL+   R           T++           ++       L S
Sbjct: 227 LYSATFPQSVQQ----FLEKHMRDPYEINLMDELTLKGISQYYAYVQERQKVHCLNTLFS 282

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   +   G+S   IH  ++Q  R ++   F+ G  + +V 
Sbjct: 283 RLQINQSIIFCNTAQRVELLAKKITDLGYSCYYIHAKMNQVYRNRVFHEFRNGNCRNLVC 342

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DIP V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D   +  IE
Sbjct: 343 TDLFTRGIDIPSVNVVINFDFPKYAETYLHRIGRSGRYGHLGVAVNLITYDDRFALKNIE 402

Query: 362 KLIEKKVDWLNGDLSS 377
             +  ++  +   +  
Sbjct: 403 TQLNTEIKAIPKHIDK 418


>gi|85859652|ref|YP_461854.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
 gi|85722743|gb|ABC77686.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
          Length = 413

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 125/374 (33%), Positives = 211/374 (56%), Gaps = 4/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  +S  +   +   G+ +PT IQ K+IP +++  DV  IAQTGTGKTA+F +P++
Sbjct: 1   MKFENYTISEAIKQNLAQLGFRRPTDIQFKSIPSIMKGEDVLAIAQTGTGKTAAFAIPLI 60

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             + + +   RV   + ++L PTRELA Q+ + F    K+  +    LIGG+  + Q +K
Sbjct: 61  DRIHREKSSKRVFGIKCIVLVPTRELAMQIGEVFAGLAKHTRVKTFPLIGGVEQDEQIRK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+LI TPGR+ D  ++G + ++ IE LV+DEAD MLD+GFI  I+ +  ++    
Sbjct: 121 LQDGIDILIATPGRMFDLIHQGHIRLDRIETLVLDEADHMLDLGFIEDIKFVKRMLHKKH 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSAT+  E++K++ + ++        +P           V       K+     + 
Sbjct: 181 QTLFFSATINPEIKKLAFSQVKGTAIRIQISPEDPVSANVTHAVMFVEMDDKRFF--LER 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++     I+F   +     +  ++E+ G     IHG  DQ  R  ++  FKEG   L
Sbjct: 239 FLKENQESKVIVFVRTRIRAERVARAMERVGLHSLTIHGEKDQAERTSVMRKFKEGECNL 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D++ARG+DIPDV +V N+D+P +AENY+HR+GRTGR    G A +  + ++   + 
Sbjct: 299 LIATDVSARGIDIPDVNYVINYDLPEKAENYVHRVGRTGRGDNKGIALSFCSSDEKMRLQ 358

Query: 359 AIEKLIEKKVDWLN 372
            I++ + K+++ + 
Sbjct: 359 EIQQFLNKEIEVVK 372


>gi|242022822|ref|XP_002431837.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212517169|gb|EEB19099.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 630

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 126/395 (31%), Positives = 211/395 (53%), Gaps = 17/395 (4%)

Query: 1   MDFADLGLSP------------KVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTG 48
           MDF +  L+P            +++  +   G+  P+PIQ +  P++L   D+ GIAQTG
Sbjct: 211 MDFEEKILNPIQTFEQAFQHYPEILDEIEKQGFKVPSPIQSQAWPILLSGKDLIGIAQTG 270

Query: 49  TGKTASFVLP----MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA 104
           TGKT +F+LP    +      G      P  LI+ PTRELA Q+ +  +KY    N+   
Sbjct: 271 TGKTLAFLLPALIHIDGQKIPGTKPRGGPNVLIIAPTRELALQIENEVKKYSYK-NIKCL 329

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
            + GG     Q   ++ G +++I TPGR+ D  N   + +++I  +V+DEADRMLDMGF 
Sbjct: 330 CVYGGGNRREQINTVQEGVEIIIATPGRLNDLVNNSYITLSSITYIVLDEADRMLDMGFE 389

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           P I+ +   +   RQ+++ SAT  +++Q++++ ++ NP ++ + +   TA       V  
Sbjct: 390 PQIRKLLLDIRPDRQSVMTSATWPNDVQRLAKRYMSNPIQVFIGSLDLTAVHSVLQRVYI 449

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
             +  KK  L   L   ++     I+F  +K    +L   L    F    IHG  +Q  R
Sbjct: 450 INEGDKKSYLFDILRNLKEEEDKIIVFVGKKNMADDLSCDLSLNRFMCQCIHGGREQMDR 509

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + L +FK G +++++A+D+A+RG+DI D+  V N+D PN  E Y+HR+GRTGRAG+ G+
Sbjct: 510 EQALDDFKTGCVKILIATDVASRGIDISDITKVLNYDFPNNIEEYVHRVGRTGRAGKTGE 569

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           A T   + +  H   +  ++E+    +  +L  + 
Sbjct: 570 AITFFTRSNWMHAGDLISIMEEANQSVPIELYEMR 604


>gi|119580652|gb|EAW60248.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_h [Homo
           sapiens]
          Length = 547

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 133/369 (36%), Positives = 204/369 (55%), Gaps = 3/369 (0%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA--RV 70
           +  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  +       R 
Sbjct: 1   MDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERG 60

Query: 71  RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130
             P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG ++ I TP
Sbjct: 61  DGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATP 120

Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190
           GR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL++SAT   E
Sbjct: 121 GRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 180

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ-DTMKNGI 249
           +++++E+FL++  +I V     +A       V    +  K   L+Q + +   +     I
Sbjct: 181 VRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTI 240

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           IF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   +++A+D+A+RGL
Sbjct: 241 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 300

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           D+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    + K++E+   
Sbjct: 301 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQ 360

Query: 370 WLNGDLSSL 378
            +N  L  L
Sbjct: 361 AINPKLMQL 369


>gi|66812836|ref|XP_640597.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
 gi|74897154|sp|Q54TJ4|DDX27_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx27; AltName:
           Full=DEAD box protein 27
 gi|60468614|gb|EAL66617.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
          Length = 783

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 155/445 (34%), Positives = 231/445 (51%), Gaps = 29/445 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  ++ AV   G+ +PTPIQ K IPL L   D+   A TG+GKTA+F+LP+L 
Sbjct: 191 TFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLE 250

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L    +  R  R LIL PTRELA Q     E   +  N+T  L++GG+  +AQ  +L +
Sbjct: 251 RLLFRDSEYRAIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRK 310

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR++DH  N   + ++++EIL++DEADR+LDMGF   I  I    P  RQT
Sbjct: 311 SPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQT 370

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY-SKKCALLQQLL 239
           +LFSAT+ DE++ +++  LQ P R++V+       T+E  FV    Q+ S + A+L  L 
Sbjct: 371 MLFSATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRPAILLSLC 430

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIFC  KK V  L             +HGN+ Q  R   L  F++G +  +
Sbjct: 431 TRVFNQGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGQVNYL 490

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +ASD+A+RGLDI  V  V N+++PN   NYIHR+GRT RAG  GK+ + +   D K +  
Sbjct: 491 LASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKD 550

Query: 360 -------------------------IEKLIE--KKVDWLNGDLSSLNPPLEKIDIAQHNH 392
                                    IE+L E  K +       + L    + +D A+   
Sbjct: 551 IVTKARNKAKSRSVSQDNVNFWRNRIEELTEDIKSIVREEMKEADLRKAEKTLDKAEKII 610

Query: 393 ARKNNPIPQKSTGFDRRKKNYSSQK 417
           +  +  +      +  +++   S++
Sbjct: 611 SNADANVETPKVWYKTKQEEDKSKE 635


>gi|255941704|ref|XP_002561621.1| Pc16g13220 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586244|emb|CAP93992.1| Pc16g13220 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 815

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 142/449 (31%), Positives = 223/449 (49%), Gaps = 24/449 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  LS  ++  +   G+  PTPIQ K IP+ L   D+ G A TG+GKTA+F++P+L
Sbjct: 304 MTFQEFNLSRPILRGLAAVGFTDPTPIQRKAIPVALLGKDIVGSAVTGSGKTAAFIVPIL 363

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +V   R +IL PTRELA Q  +   K     ++T   L+GG     Q   L+
Sbjct: 364 ERLLFRPRKVPTSRVVILMPTRELAVQCYNVSVKLATFTDVTFCQLVGGFSLREQENVLK 423

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNI-EILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  DV+I TPGR +DH         +  EILV+DEADRML+ GF   +  I + +P +RQ
Sbjct: 424 KRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQ 483

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTD + K+    +  P R+ V++  +T  T+   FV        K       L
Sbjct: 484 TMLFSATMTDSIDKLIRVGMNRPVRLMVDSKKNTVSTLVQEFVRLRPGREDKRLGYLLHL 543

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   K  IIF  QKK    +       G     +HG++ Q  R+K + NF++G +  +
Sbjct: 544 CKEIYSKRVIIFFRQKKEAHRVRIIFSLLGLKAAELHGSLSQEQRIKSVENFRDGKVAFL 603

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI-- 357
           +A+D+A+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K +  
Sbjct: 604 LATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKIVKL 663

Query: 358 --------------DAIEKLI----EKKVDWLNGDLSSL---NPPLEKIDIAQHNHARKN 396
                           IE+ +     +K + +  +++ +       +++  A+    +  
Sbjct: 664 AVRAGKAQGAKIASRVIEQAVADSWAQKAEEMADEVAEILQEEKTEKQLSQAEMQFTKGE 723

Query: 397 NPIPQKSTGFDRRKKNYSSQKSHIPLKES 425
           N +   +    R K+ +   +    +   
Sbjct: 724 NLMKHGAEIMSRPKRTWFETEKEKKVSRK 752


>gi|302142729|emb|CBI19932.3| unnamed protein product [Vitis vinifera]
          Length = 786

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 134/403 (33%), Positives = 221/403 (54%), Gaps = 6/403 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLSP V  A+   GY  PTPIQ KT+PL+L   DV  +A+TG+GKTA+F++PML  
Sbjct: 29  FESLGLSPNVYRAIKRKGYRVPTPIQRKTMPLILSGCDVVAMARTGSGKTAAFLIPMLER 88

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++   +    R LIL PTR+LA Q     ++  +  ++ ++LL+GG   E+Q ++L + 
Sbjct: 89  LKQHVPQTG-VRALILSPTRDLALQTLKFTKELARYTDVRISLLVGGDSMESQFEELAQN 147

Query: 123 ADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR++ H      + +  +E +V DEAD +  MGF   +  I + +   RQTL
Sbjct: 148 PDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAEQLHKILAQLSDNRQTL 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L + ++  LQ+P+ + ++  +  +  +      T     K  ALL  + + 
Sbjct: 208 LFSATLPSALAEFAKAGLQDPQLVRLDLDTKISPDL-KVNFFTLRHEEKLAALLYLIREQ 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  +IF + K +V  L     ++G      +G++DQ +R   +S F+     L++ 
Sbjct: 267 ISSDQQTLIFVSTKHHVEFLNVLFREEGIEASVCYGDMDQDARKIHISRFRSRKTMLLIV 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP + +V N+D P + + ++HR+GR  RAGR G AF+ V  ED+ ++  + 
Sbjct: 327 TDVAARGIDIPLLDNVVNWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMPYLLDLH 386

Query: 362 KLIEKKVDWLNGDLSSLNPP---LEKIDIAQHNHARKNNPIPQ 401
             + K +     +   L  P   + KID    N       +PQ
Sbjct: 387 LFLSKPIRAAPTEEEVLQDPDEVMSKIDQIVANGGTVYGRLPQ 429


>gi|225457847|ref|XP_002279081.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 778

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 134/403 (33%), Positives = 221/403 (54%), Gaps = 6/403 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLSP V  A+   GY  PTPIQ KT+PL+L   DV  +A+TG+GKTA+F++PML  
Sbjct: 29  FESLGLSPNVYRAIKRKGYRVPTPIQRKTMPLILSGCDVVAMARTGSGKTAAFLIPMLER 88

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++   +    R LIL PTR+LA Q     ++  +  ++ ++LL+GG   E+Q ++L + 
Sbjct: 89  LKQHVPQTG-VRALILSPTRDLALQTLKFTKELARYTDVRISLLVGGDSMESQFEELAQN 147

Query: 123 ADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR++ H      + +  +E +V DEAD +  MGF   +  I + +   RQTL
Sbjct: 148 PDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAEQLHKILAQLSDNRQTL 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L + ++  LQ+P+ + ++  +  +  +      T     K  ALL  + + 
Sbjct: 208 LFSATLPSALAEFAKAGLQDPQLVRLDLDTKISPDL-KVNFFTLRHEEKLAALLYLIREQ 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  +IF + K +V  L     ++G      +G++DQ +R   +S F+     L++ 
Sbjct: 267 ISSDQQTLIFVSTKHHVEFLNVLFREEGIEASVCYGDMDQDARKIHISRFRSRKTMLLIV 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP + +V N+D P + + ++HR+GR  RAGR G AF+ V  ED+ ++  + 
Sbjct: 327 TDVAARGIDIPLLDNVVNWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMPYLLDLH 386

Query: 362 KLIEKKVDWLNGDLSSLNPP---LEKIDIAQHNHARKNNPIPQ 401
             + K +     +   L  P   + KID    N       +PQ
Sbjct: 387 LFLSKPIRAAPTEEEVLQDPDEVMSKIDQIVANGGTVYGRLPQ 429


>gi|195069805|ref|XP_001997032.1| GH23229 [Drosophila grimshawi]
 gi|193906224|gb|EDW05091.1| GH23229 [Drosophila grimshawi]
          Length = 649

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 125/355 (35%), Positives = 199/355 (56%), Gaps = 3/355 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F   G   +++ +V  A Y +PTPIQ + +P  L   D+ GIA+TG+GKTA+F+ P+  
Sbjct: 293 SFGHFGFDDQLLKSVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPLLT 352

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + ++       P  LIL PTREL+ Q+ +  +K+GK YN+ V    GG     Q+K L
Sbjct: 353 HLMDQRELRPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSKAL 412

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G ++++ TPGR++D        +  +  LV+DEADRM  MGF P +++I + V   RQ
Sbjct: 413 EQGCEIVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQ 472

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    +++++ + L +P RI     +   + I            K   LL  L+
Sbjct: 473 TLLFSATFKKRIERLARDILTDPVRIVQGDLNEANQDITQHVYVFPNPLQKWNWLLCHLV 532

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        ++F  +K +   + ++L  +  +   +HG++DQ  R K++  FK     ++
Sbjct: 533 KFLSEG-GVLVFVTKKADAETVSNNLLLKEHNCLLLHGDMDQADRNKVIMQFKRKECDIL 591

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           VA+D+AARGLDIP + +V N+D+    + + HRIGRTGRAG  G A+TLV  +D 
Sbjct: 592 VATDVAARGLDIPHIRNVINYDIARDIDTHTHRIGRTGRAGEKGNAYTLVTDKDK 646


>gi|119468940|ref|ZP_01611965.1| putative ATP-dependent RNA helicase (rhlE-like) [Alteromonadales
           bacterium TW-7]
 gi|119447592|gb|EAW28859.1| putative ATP-dependent RNA helicase (rhlE-like) [Alteromonadales
           bacterium TW-7]
          Length = 415

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 168/415 (40%), Positives = 236/415 (56%), Gaps = 10/415 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L P ++ A+    Y  PT IQIKTIP +L  +DV G AQTGTGKTA+FVLP+L 
Sbjct: 5   SFSSLNLDPLLLTAIEQNNYTTPTAIQIKTIPPILAGNDVMGSAQTGTGKTAAFVLPLLH 64

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L     +         IL PTRELA QV  +FEKY +  N+  AL  GG     Q K L
Sbjct: 65  KLLNTPKKDEPGIARVVILTPTRELAQQVFASFEKYAQGSNVQGALAYGGASIGPQIKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    + + TPGR+LDH  +G +++++++ LV DEADRMLDMGFI  I+ I   +P  RQ
Sbjct: 125 KTAQVI-VATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIKRILRHIPGDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  D +  +SE  L+NP+ IEV+  +S A  +E    A      ++       +
Sbjct: 184 TLLFSATFDDSVFGLSEKLLKNPELIEVDKRNSAAVEVEQIIYAVDEDRKRELVSH---M 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  +IF   K+    L   + K G    +IHG+  Q +R + L NFKEGT +++
Sbjct: 241 IGMKNWRQVLIFTRTKQMADKLAKEMCKDGLKTESIHGDKSQGARDRALQNFKEGTTRVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP + +V NF++P  AE+Y+HRIGRTGRAG  G A +LV+ ++   ++ 
Sbjct: 301 VATDVAARGLDIPALKYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSIDEQWLLEE 360

Query: 360 IEKLIEKKV--DWLNGDLSSLN--PPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           IE L++ ++   WL G    LN  P   + +  +    R    I  K     RRK
Sbjct: 361 IEVLLDTRLAPQWLEGYEPDLNKAPKDNRKNTNKARKDRDKKRITGKRAPSRRRK 415


>gi|299117107|emb|CBN73878.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 467

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 134/368 (36%), Positives = 212/368 (57%), Gaps = 3/368 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  +   V+  VL  G+ KPTPIQ +  P+ L   D+ GI+ TG+GKT +F+LP +
Sbjct: 61  MTFEEASMPEYVLREVLKQGFPKPTPIQSQGWPMALLGRDMVGISATGSGKTLAFLLPAM 120

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       +   P  L++ PTRELA Q+ +  +K+G + ++    + GG+P  +Q   
Sbjct: 121 IHINAQPYLEQGDGPIVLVVAPTRELAVQIKEECDKFGGSSDIKNTCVYGGVPKRSQVYD 180

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG +++I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I++I S +   R
Sbjct: 181 LSRGVEIVIATPGRLIDLLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRSIVSQIRPDR 240

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E++ ++ +FL+N  ++ V +   +A       V     + K   L + L
Sbjct: 241 QTLMWSATWPKEVEGLARDFLRNYYQVTVGSLELSANKDIQQVVEIVEDFGKYRVLAKHL 300

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +  +     +IF   KK    L  SL  +G+   AIHG+ +Q  R ++L +FKEG   +
Sbjct: 301 QEHNNAG-RVLIFVETKKGCDALTRSLRHEGWPALAIHGDKNQSERDRVLHDFKEGRSLI 359

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ D+  V NFD P   E+Y+HRIGR GRAG  G A +  A ++ K   
Sbjct: 360 LVATDVAARGLDVKDIRMVINFDFPKEMESYVHRIGRCGRAGHKGTAISFFAGKNSKCAR 419

Query: 359 AIEKLIEK 366
            + +++++
Sbjct: 420 ELIRILKQ 427


>gi|326915068|ref|XP_003203843.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Meleagris
           gallopavo]
          Length = 369

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 128/359 (35%), Positives = 200/359 (55%), Gaps = 5/359 (1%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79
           G+ KP+ IQ + I  +++  DV   +Q+GTGKTA+F + +L  L+    +VR  + LIL 
Sbjct: 15  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI---QVRETQALILA 71

Query: 80  PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139
           PTRELA Q+       G   N+     IGG       +KL+ G  V+  TPGR+ D   R
Sbjct: 72  PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR 131

Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199
             L    I++LV+DEAD ML+ GF   I ++   +P   Q +L SAT+  E+ +++  F+
Sbjct: 132 RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFM 191

Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259
            +P RI V     T E I+  FVA   +  K   L         T+   +IFCN K+ V 
Sbjct: 192 TDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YDTLTITQAVIFCNTKRKVD 249

Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319
            L   + +  F+V ++HG++ Q+ R  I+  F+ G  ++++++D+ ARGLD+P V  + N
Sbjct: 250 WLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN 309

Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           +D+PN  E YIHRIGR+GR GR G A   V  +DI+ +  IE+    ++D +  +++ L
Sbjct: 310 YDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL 368


>gi|238897336|ref|YP_002923013.1| ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259585614|sp|C4K8M8|RHLB_HAMD5 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|229465091|gb|ACQ66865.1| ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 422

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 134/409 (32%), Positives = 208/409 (50%), Gaps = 9/409 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P V+ A+ + G+   TPIQ  + P+ L   DV   AQTGTGKT +F+  +  
Sbjct: 10  KFSDFALHPLVIKAIENQGFYHCTPIQALSFPITLAGRDVAAQAQTGTGKTLAFLASVFN 69

Query: 62  ILEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L         +   PR LI+ PTRELA Q+  + E   +  +L + L  GG  ++ Q K
Sbjct: 70  YLLTNAADETRQCEQPRALIMVPTRELAIQIYTDAETLSQFTSLKMGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI TPGRI+D+  +  + +N ++++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 ILESGVDILIGTPGRIIDYAKQNFIHLNALQVIVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T   +    +F Q      +       +         +   ++    L Q
Sbjct: 190 EKRLNMLFSATLSYRVRELSFEQMNHPEYIEVEPLQ-KIGSQIQEELFYPSNEDKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K+   ++   L   G  V  + G++ QR R++IL +F +G + 
Sbjct: 249 TLIEEEWPDRCIIFANTKQRCEDIWGHLVADGHRVGLLTGDVAQRKRIQILDDFSKGYLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P   E+YIHRIGRTGRAG  G + +L  +    H+
Sbjct: 309 ILVATDVAARGLHIPKVTHVFNYDLPENVEDYIHRIGRTGRAGEKGYSISLACEAFASHL 368

Query: 358 DAIEKLIEKKVD--WLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQK 402
             IE     ++     N +  L+ L  P       +H    +N    +K
Sbjct: 369 STIEACTGHRIPTSEYNKEALLTDLPQPKRLQRHHRHYAGSRNQGASRK 417


>gi|212633329|ref|YP_002309854.1| ATP-dependent RNA helicase RhlB [Shewanella piezotolerans WP3]
 gi|226739551|sp|B8CHZ1|RHLB_SHEPW RecName: Full=ATP-dependent RNA helicase rhlB
 gi|212554813|gb|ACJ27267.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 437

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 134/427 (31%), Positives = 229/427 (53%), Gaps = 12/427 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  L  +V  A+ + G+   TPIQ  ++P++L + D+ G AQTGTGKT +F++    
Sbjct: 10  KFADFPLHKEVQQALNEVGFEFCTPIQALSLPILLAKKDIAGQAQTGTGKTLAFLVATFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      ++  PR +I+ PTRELA Q+A +     K+  L V ++ GG  +EAQ K
Sbjct: 70  HLLTEAAPTERKINQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGEGYEAQRK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++G D+LI T GRI+D+  +G + ++ I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLDKGIDILIGTTGRIIDYVRQGVIDVSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +  L    + T  ++     +       E    +   +T ++     +    ++   L  
Sbjct: 190 KSRLNMLFSATLSMKVQELAYDH-MNEPEKVEIAPNEKTSKNIKEEIFYPSMEEKMPLLL 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +D  +  I+F N K +   +   LE  G  V  + G++ Q+ R++IL  F  G I 
Sbjct: 249 SLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRVGLLTGDVPQKKRLRILEQFTSGDID 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG+ G + +   +E   ++
Sbjct: 309 VLVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHAR----KNNPIPQKSTGFDRRK 410
            AIE  I+  +   + D  +L    P  ++I     +H+R    ++   PQ     +  +
Sbjct: 369 PAIESYIQHSIPVTSYDSEALLDDIPAPKRIHRKPSSHSRNSRDRSGSRPQGGHRGNAPR 428

Query: 411 KNYSSQK 417
           ++  +++
Sbjct: 429 RHDKTRR 435


>gi|282899322|ref|ZP_06307291.1| DEAD/DEAH box helicase-like protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195779|gb|EFA70707.1| DEAD/DEAH box helicase-like protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 497

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 151/469 (32%), Positives = 244/469 (52%), Gaps = 33/469 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LG+SP+    + + G+  PT IQ + IP +L   DV G +QTGTGKTA+F LP+L
Sbjct: 4   ITFQELGISPERATHLENMGFTTPTNIQTQAIPQLLAGRDVVGQSQTGTGKTAAFSLPIL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  +  V+    L+L PTRELA QV D   ++  +  L V  + GG   + Q  +L+
Sbjct: 64  ERLDPNKRAVQ---ALVLTPTRELAMQVHDAISQFMGDSELRVLAIYGGQSIDRQMIQLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++D   RG L ++ ++  V+DEAD ML MGFI  +  I S  P  RQT
Sbjct: 121 RGVHVVVGTPGRVIDLLERGSLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPQNRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++++   FL +P  + V  P +T   I          ++K  A   Q + 
Sbjct: 181 ALFSATMPPSIRQLVNKFLNSPVTVTVEQPKATPTKINQVAYLIPRHWTK--AKALQPIL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  +IF   ++    L + L+  G SV   HG++ Q++R ++L+ F+   ++ +V
Sbjct: 239 EMEDPETALIFVRTRRTAAELTNQLQSAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK----- 355
           A+D+AARGLD+  + HV NFD+P+  E Y+HRIGRTGRAG+ G A +LV   + +     
Sbjct: 299 ATDIAARGLDVDLLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQAF 358

Query: 356 -------------------HIDAIEKLIEKKVDWLNGD-LSSLNPPLEKIDIAQHNHARK 395
                                  I+KL E+  + L G+ L+S  P + ++      +  +
Sbjct: 359 ERHNRQNWQVLSIPTRAQIEAKHIQKLKEQVSEALAGERLASFLPIISELT---EKYDAQ 415

Query: 396 NNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLG 444
                     +D+ +  +      IP++E     K+ +  + +D +  G
Sbjct: 416 AIAAAALQLAYDQTRPAWLQNGVDIPVEEPTPKPKINKRRESSDGNGAG 464


>gi|261333672|emb|CBH16667.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 616

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 117/391 (29%), Positives = 191/391 (48%), Gaps = 11/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F+++ + P ++  V   GY KPTP+Q   IP  L   D+   AQTG+GKTAS+++P  
Sbjct: 115 LSFSEMNMVPVLLENVKRCGYTKPTPVQSLGIPTALNHRDLMACAQTGSGKTASYLIPAI 174

Query: 59  ------MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                 +             P+ LIL PTREL+ Q+     K+  +  +   ++ GG   
Sbjct: 175 NEILLNISNRPPYSPGSHSSPQALILAPTRELSLQIYGEARKFTYHTPVRCVVVYGGADP 234

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q  +L RG  +L+ TPGR++D F+RG +  + I  L++DEADRMLDMGF P I+ I  
Sbjct: 235 RHQVHELSRGCKLLVATPGRLMDMFSRGYVRFSEIRFLILDEADRMLDMGFEPQIRMIVQ 294

Query: 173 LVPFTRQTLLFSA---TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                                  ++     +   R           T E+          
Sbjct: 295 GPDSDMPRAGQRQTLLYSATFPVEIQRLAREFMCRHSFLQVGRVGSTTENITQDVRWIED 354

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
                    L  ++  K  ++F  +K++   L   L     +  +IHG+  QR R + L 
Sbjct: 355 PDKRQALLTLLRENEGKLVLVFVEKKRDADYLERFLRNSELACVSIHGDRVQREREEALR 414

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G  Q++VA+D+A+RGLDIP+VG V  +D+P+  ++Y+HRIGRTGRAG+ G A +  
Sbjct: 415 LFKSGACQVLVATDVASRGLDIPNVGVVIQYDMPSNIDDYVHRIGRTGRAGKVGVAISFF 474

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNP 380
            +++   +D +  L+ +    ++ ++ +L  
Sbjct: 475 NEKNRNIVDDLIPLLNETNQVISPEVRALAK 505


>gi|242051919|ref|XP_002455105.1| hypothetical protein SORBIDRAFT_03g004420 [Sorghum bicolor]
 gi|241927080|gb|EES00225.1| hypothetical protein SORBIDRAFT_03g004420 [Sorghum bicolor]
          Length = 673

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 130/379 (34%), Positives = 205/379 (54%), Gaps = 2/379 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G   +++  VL AG+  PTPIQ ++ P+ ++  D+  +A+TG+GKT  ++LP  
Sbjct: 157 MTFQSTGFPSEILREVLQAGFSAPTPIQAQSWPIAIKGRDIVAVAKTGSGKTLGYLLPGF 216

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +          P  L+L PTRELA Q+ D   K+G++  ++   L GG P   Q ++L
Sbjct: 217 ILLKRLQHNSREGPTVLVLSPTRELATQIQDEAIKFGRSSRISSTCLYGGAPKGPQLREL 276

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGADV++ TPGR+ D     K+ +  +  LV+DEADRMLDMGF P I+ I   +P  RQ
Sbjct: 277 ERGADVVVATPGRLNDILEMNKVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKQIPPRRQ 336

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+++AT   E+++++ + L NP ++ +                    + +K   L Q +
Sbjct: 337 TLMYTATWPKEVRRIASDLLNNPVQVNIGNTDQLVANKSITQHVEVIPHMEKSRRLDQ-I 395

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + II     K + +       + +   AIHG+  Q  R  +L++F+ G   ++
Sbjct: 396 LRSQDPGSKIIIFCSTKRMCDQLARNLSRQYGASAIHGDKSQSERDSVLNDFRSGRCPVL 455

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G A+T    +D K+   
Sbjct: 456 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGSAYTFFGDQDSKYASD 515

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E     +   L  +
Sbjct: 516 LVKILEGANQSVPQQLKEM 534


>gi|71749190|ref|XP_827934.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70833318|gb|EAN78822.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
          Length = 660

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 117/391 (29%), Positives = 191/391 (48%), Gaps = 11/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F+++ + P ++  V   GY KPTP+Q   IP  L   D+   AQTG+GKTAS+++P  
Sbjct: 157 LSFSEMNMVPVLLENVKRCGYTKPTPVQSLGIPTALNHRDLMACAQTGSGKTASYLIPAI 216

Query: 59  ------MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                 +             P+ LIL PTREL+ Q+     K+  +  +   ++ GG   
Sbjct: 217 NEILLNISNRPPYSPGSHSSPQALILAPTRELSLQIYGEARKFTYHTPVRCVVVYGGADP 276

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q  +L RG  +L+ TPGR++D F+RG +  + I  L++DEADRMLDMGF P I+ I  
Sbjct: 277 RHQVHELSRGCKLLVATPGRLMDMFSRGYVRFSEIRFLILDEADRMLDMGFEPQIRMIVQ 336

Query: 173 LVPFTRQTLLFSA---TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                                  ++     +   R           T E+          
Sbjct: 337 GPDSDMPRAGQRQTLLYSATFPVEIQRLAREFMCRHSFLQVGRVGSTTENITQDVRWIED 396

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
                    L  ++  K  ++F  +K++   L   L     +  +IHG+  QR R + L 
Sbjct: 397 PDKRQALLTLLRENEGKLVLVFVEKKRDADYLERFLRNSELACVSIHGDRVQREREEALR 456

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G  Q++VA+D+A+RGLDIP+VG V  +D+P+  ++Y+HRIGRTGRAG+ G A +  
Sbjct: 457 LFKSGACQVLVATDVASRGLDIPNVGVVIQYDMPSNIDDYVHRIGRTGRAGKVGVAISFF 516

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNP 380
            +++   +D +  L+ +    ++ ++ +L  
Sbjct: 517 NEKNRNIVDDLIPLLNETNQVISPEVRALAK 547


>gi|313225950|emb|CBY21093.1| unnamed protein product [Oikopleura dioica]
          Length = 485

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 141/381 (37%), Positives = 218/381 (57%), Gaps = 4/381 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F + G+   ++  V  AGYV PT IQ ++ P+ L   D+ GIA+TG+GKT +FVLP  
Sbjct: 55  LQFMEAGIPDYLMGTVTAAGYVTPTTIQSQSWPIALSGADMQGIARTGSGKTLAFVLPSI 114

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  + +        P  +IL PTRELA QV +  E++GK   +    + GG    AQ   
Sbjct: 115 IHIMAQPDLRPGDGPVAVILAPTRELAKQVQEVAEQFGKPCGVNTVAVYGGADKRAQIGA 174

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERGA +++  PGR+LD    G+  ++    L++DEADRMLDMGF P I+ I   +   R
Sbjct: 175 LERGAHIVVACPGRLLDLIQSGRTNLHRTTFLILDEADRMLDMGFEPQIRKIVGQIRQDR 234

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT   E+QK++ +F++ P +I +     TA       V   + + K        
Sbjct: 235 QTLMFSATWPKEIQKLASDFMKTPTQIFIGNQELTANPNIEQVVEVVSDFDKAMRFN--Y 292

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q T    ++F + K++  NL +++        AIHG+ DQR R ++L +F+ G I +
Sbjct: 293 WFQQITSPKILVFTDTKRDCDNLAYTMSNGRVRCAAIHGDKDQRERERVLKDFRNGQISV 352

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+G V N+D P++ E+Y+HRIGRT R  + GK+ + +  +  KH  
Sbjct: 353 LVATDVAARGLDIDDIGTVINYDFPSQLEDYVHRIGRTARGEKKGKSISFITAKSAKHAS 412

Query: 359 AIEKLIEKKVDWLNGDLSSLN 379
           A+ KL+E+    +  +L  L+
Sbjct: 413 ALVKLLEQAKQHVPPELVQLS 433


>gi|254497847|ref|ZP_05110613.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
 gi|254352925|gb|EET11694.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
          Length = 584

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 143/372 (38%), Positives = 221/372 (59%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA    S  +  A+ D  +  P+PIQ +TIPL L+  D   +AQTGTGKTA+F LP+L 
Sbjct: 7   NFASFNFSDAINQALEDMKFTTPSPIQTQTIPLFLEGRDAIALAQTGTGKTAAFALPILQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFE-KYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +       +  + LIL PTRELA QVA+ FE    + +   VA L GG  +  Q K+L 
Sbjct: 67  KITPN---GQGTQALILAPTRELAIQVAEQFELLSARQHGTKVATLCGGQEYGRQLKQLR 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRILDH  +G L ++N+   ++DEAD ML MGFI  I+ I + +P  +Q 
Sbjct: 124 AGAQIVVGTPGRILDHIEKGTLQLSNLRTFILDEADEMLRMGFIEDIETIMAKLPEQKQI 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   +++++  +L NP  IE+ + ++T ++IE  F+           +    ++
Sbjct: 184 GLFSATMPHRIRQIANTYLNNPASIEIRSETATVKSIEQRFLFASGHQKPDALVRVLAVE 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   I+F   K +   +   L++QG    AIHG+I Q  R +I++ F++G I ++V
Sbjct: 244 EYQGV---IVFVRTKSSTEEVAELLQQQGLRAMAIHGDITQALRERIIAQFRQGAIDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV N+D+P+  E Y+HRIGRTGRAGR G A   V  ++ + I ++
Sbjct: 301 ATDVAARGLDVERVTHVINYDLPHDNETYVHRIGRTGRAGRSGVAILFVTPKESRLISSV 360

Query: 361 EKLIEKKVDWLN 372
           E+   +++  +N
Sbjct: 361 ERHTRQRITKVN 372


>gi|167764052|ref|ZP_02436179.1| hypothetical protein BACSTE_02435 [Bacteroides stercoris ATCC
           43183]
 gi|167698168|gb|EDS14747.1| hypothetical protein BACSTE_02435 [Bacteroides stercoris ATCC
           43183]
          Length = 644

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 137/385 (35%), Positives = 224/385 (58%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+SP++  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP++
Sbjct: 3   TFEELGVSPEIRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             +       R+P++LIL PTREL  Q+A +   Y K  +    L + G    E+Q + L
Sbjct: 63  QQINVNN---RIPQSLILCPTRELCLQIAGDLNDYSKYIDGLRVLPVYGGSSIESQIRAL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR+LD   R  + ++ I+ +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KRGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILADVPQERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+ ++S+ +L N K I +   +   E   +     +  ++K      + +
Sbjct: 180 TLLFSATMSPEIARISKKYLHNAKEITIGRRN---EGTSNVKHVVFTVHAKDKYAALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L ++G++  ++HG + Q  R  ++  F+   +QL+
Sbjct: 237 VDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRE 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE++I KK  ++ G++ +     EK
Sbjct: 357 IERIIGKK--FIQGEMPTGKQICEK 379


>gi|119773524|ref|YP_926264.1| ATP-dependent RNA helicase RhlE [Shewanella amazonensis SB2B]
 gi|119766024|gb|ABL98594.1| ATP-dependent RNA helicase RhlE [Shewanella amazonensis SB2B]
          Length = 464

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 152/425 (35%), Positives = 231/425 (54%), Gaps = 10/425 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL+P +  A+    Y +PT IQ K IP+ L   ++   AQTGTGKTA+F LP++
Sbjct: 1   MSFARLGLAPAITSALESLNYQQPTEIQQKAIPVALSGRNLLAAAQTGTGKTAAFGLPLI 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R +IL PTREL  QVADN   Y  N  LTV  + GG+  +AQ + L
Sbjct: 61  ERLSQGKTERKKRVRAVILAPTRELVVQVADNLSAYAANLPLTVLAMYGGVDMQAQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+ D +++  +    I++LV+DEADRMLDMGFI  I ++ S +P  RQ
Sbjct: 121 IAGVDILVATPGRLKDMYHQRAVYFEEIQVLVLDEADRMLDMGFIEVINDLISRMPTNRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++  +++     L      +    +    + +              + L   L
Sbjct: 181 NLLFSATLSPRIRE-----LAKTAVPDPVEIAIAKPSKKEISQWLVTVDKDTKSALLSHL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  +IF   K     L   LEK+G    A H    Q  R ++LS FK+G++Q +
Sbjct: 236 IQTEQWQQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAVREQVLSEFKDGSLQYL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+D+  +  V N+D+P   + YIHRIGRTGRAG  G+A +L++K+D K++  
Sbjct: 296 VATGVAARGIDVDKLERVVNYDLPFPPDEYIHRIGRTGRAGMTGEAVSLLSKDDFKNLCM 355

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD-RRKKNYSSQKS 418
           IE  +   ++    +      P + I ++  ++  K+ P  Q S+    +R    SSQ+ 
Sbjct: 356 IESRLGHVIERRVIEGFE---PKKPIPVSILDYKPKSQPKAQPSSELSPQRNSQPSSQRK 412

Query: 419 HIPLK 423
               K
Sbjct: 413 SRTEK 417


>gi|303238769|ref|ZP_07325301.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302593648|gb|EFL63364.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 544

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 136/372 (36%), Positives = 220/372 (59%), Gaps = 7/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL LS ++  A+ D G+ + TPIQ +TIP +L+  D+ G AQTGTGKT +F +P + +
Sbjct: 6   FKDLNLSDEIQKAIADMGFEEATPIQSQTIPQILKGIDLIGQAQTGTGKTCAFGIPAIEM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+     ++    LIL PTRELA Q+++      K       L +  G P + Q   L++
Sbjct: 66  LDPQNEGIQ---VLILSPTRELAIQISEELRDVSKYKEGIKILPVYGGQPIDRQIAALKK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRI+DH  R  L + ++++L++DEAD ML+MGF   I  I   VP  +QT+
Sbjct: 123 RPQIIIGTPGRIMDHMRRRTLKLADLKMLILDEADEMLNMGFREDIDTILEKVPEEKQTI 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+  ++  +L+NP  I+      T  +IE  ++            +   L  
Sbjct: 183 LFSATMPKEILDLTSKYLKNPLHIKAAHKQMTVPSIEQFYLEVSQSSK---LEILSRLID 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + +   ++FCN K+ V  L  SL+ +G+S  A+HG++ Q  R ++++ F++G I +++A
Sbjct: 240 ANNIGLSLVFCNTKRQVDELTSSLQSRGYSTEALHGDMKQDQRNRVMTKFRKGQIDILIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ +V  VFN+D+P+  E Y+HRIGRTGRAG+ GK+FT V   +I  +  I+
Sbjct: 300 TDVAARGIDVDNVEAVFNYDLPSDEEYYVHRIGRTGRAGKTGKSFTFVVGREIHKLKDIQ 359

Query: 362 KLIEKKVDWLNG 373
           +  +  +  +  
Sbjct: 360 RYTKSTIHLIKP 371


>gi|294141997|ref|YP_003557975.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293328466|dbj|BAJ03197.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 430

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 156/426 (36%), Positives = 225/426 (52%), Gaps = 11/426 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L+P ++ A+ + GY + T +Q + IPL L   D+   A+TGTGKTASF LP+L
Sbjct: 1   MKFDALDLNPLLLQAIDECGYQQLTQVQSEVIPLALSGVDLMACAETGTGKTASFALPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K        R LIL PTRELA QVA+N  +YG+  +L    + GG     Q K L 
Sbjct: 61  ERLLKEDHESPCLRGLILTPTRELAIQVAENITRYGQFTSLKTLAVYGGANMNPQRKALN 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGR+ D   +  L ++ +  L+IDEADRMLDMGF+  I+ + SLV     T
Sbjct: 121 AGVDILVATPGRLFDFVGQHGLNLSEVTSLIIDEADRMLDMGFVRDIEKVKSLVSSQHLT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSAT +D ++ ++E  L +P+ I V    S A          Y    ++ A L   L 
Sbjct: 181 HFFSATYSDPVKLLAEKMLNSPQWINVAQTRSAASV----EQEIYLVDKRRKAELLSELI 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  ++F   K++  +L   L   G      HG+  Q +R + L  FK G I++MV
Sbjct: 237 GRNNWQQVLVFATTKESAEHLKSELSLDGIKCGVFHGDRTQGARNRTLEEFKSGKIRVMV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N ++P  AE+YIHR+GRTGRAG  G+A + V   D + ++ I
Sbjct: 297 ATDVAARGLDIQALPLVINLELPYGAEDYIHRVGRTGRAGLTGRAISFVCPSDEEMLEEI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LIE K+  +      L  PL           R+   +      F+RRK    ++    
Sbjct: 357 ESLIELKLPRIVLPGYELGAPL-------PARYRETQDVTSTKKKFERRKGKPVNKHKGK 409

Query: 421 PLKESE 426
           P   S+
Sbjct: 410 PKGRSD 415


>gi|294894930|ref|XP_002775023.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239880806|gb|EER06839.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 647

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 123/384 (32%), Positives = 202/384 (52%), Gaps = 7/384 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  L   ++  +  AG+V PTPIQ++  P+ L   D+ GIA+TG+GKT +F+LP + 
Sbjct: 200 QFEEACLPDYIMVEIQKAGFVSPTPIQVQGWPVALSGRDMVGIAETGSGKTLAFLLPAVV 259

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       +   P  L+L PTRELA Q+ +  +++G++  ++     GG+P   Q + L
Sbjct: 260 HINAQPYLQKGDGPIVLVLAPTRELALQIKEECDRFGRSSRISNTCCYGGVPRGPQARML 319

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++ I TPGR++D        +  +  LV+DEADRMLDMGF P ++ I S +   RQ
Sbjct: 320 QNGVEICIATPGRLIDFLESEVTNLRRVTYLVLDEADRMLDMGFEPQVRKIVSQIRPDRQ 379

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   ++Q+++ +             S  A      FV    +  K   L   + 
Sbjct: 380 TLMWSATWPKDVQQLARDLCNEEPVHVTVGQSGHACHNIQQFVEVVEENVKSERLQALMR 439

Query: 240 QS-----QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
                         +IF + K+   ++   L + G+   +IHG+  Q  R  +L+ FK G
Sbjct: 440 AVASASGGVFDAKALIFTDTKRCADDITRVLRRDGWPALSIHGDKKQSERDWVLAEFKSG 499

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + +M+A+D+A+RGLD+ DV +V N+D P   E+Y+HRIGRTGRAG HG A++    +  
Sbjct: 500 RMPIMIATDVASRGLDVKDVKYVINYDFPGTIEDYVHRIGRTGRAGAHGTAYSFFTADKA 559

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL 378
           K    +  ++ +    +   L  L
Sbjct: 560 KLAKPLIGILREASQPVPEALERL 583


>gi|212526914|ref|XP_002143614.1| ATP-dependent RNA helicase , putative [Penicillium marneffei ATCC
           18224]
 gi|210073012|gb|EEA27099.1| ATP-dependent RNA helicase , putative [Penicillium marneffei ATCC
           18224]
          Length = 474

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 136/391 (34%), Positives = 215/391 (54%), Gaps = 6/391 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL P++  A    GY  PT IQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 46  TFKDLGLIPQLCEACETLGYKAPTAIQAESIPLALQNRDLIGLAETGSGKTAAFALPILQ 105

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    L+L PTRELA Q+++ FE  G   ++   +L+GG+    Q   + +
Sbjct: 106 ALMD---KPQPFFGLVLAPTRELAYQISEAFEALGSTISVRSVVLVGGMDMVPQAIAIGK 162

Query: 122 GADVLICTPGRI-LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+     N     + +++ LV+DEADR+LDM F P I  I  ++P  R+T
Sbjct: 163 RPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDMDFGPIIDKILKVLPRERRT 222

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L NP R+  +  S+  +T+            K   +    L 
Sbjct: 223 FLFSATMSSKVESLQRASLSNPLRV--SVSSNKYQTVSTLLQYYMFIPHKHKDVHLIWLL 280

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   +  IIF         L       GFS  A+HG + Q SR+  +S F+  T  +++
Sbjct: 281 NEHIGQTTIIFTRTIHETNRLALLTRFLGFSAIALHGQLSQSSRLASISKFRSKTRSILI 340

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V N+D+   ++ ++HRIGRT RAG+ GKA +LV + D++    I
Sbjct: 341 ATDVAARGLDIPSVDLVLNYDLAADSKTHVHRIGRTARAGKSGKAISLVTQYDVEVWLRI 400

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
           EK ++KK+     +   +    +++  AQ  
Sbjct: 401 EKALDKKLPEYKVEKDEVLILSDRVSEAQRQ 431


>gi|182416631|ref|ZP_02948044.1| cold-shock deAd box protein a [Clostridium butyricum 5521]
 gi|237668564|ref|ZP_04528548.1| putative helicase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182379523|gb|EDT77009.1| cold-shock deAd box protein a [Clostridium butyricum 5521]
 gi|237656912|gb|EEP54468.1| putative helicase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 369

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 125/375 (33%), Positives = 203/375 (54%), Gaps = 6/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  LG+  ++V  +   G   PTPIQ ++I ++    D+   A TGTGKT +F+LP+ 
Sbjct: 1   MDFKKLGICKELVDILNKNGISAPTPIQEESIEIIKNGKDIIAEAGTGTGKTLAFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      V+    LIL PTRELA Q+ +  +K  ++  + V    GG    +Q KKL 
Sbjct: 61  EQINPKSKDVQA---LILTPTRELALQITNEADKLNEDKKINVLACYGGKDISSQLKKLN 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+LDH  R  + +  ++  V+DEAD+ML MGF   ++ I   +   +Q 
Sbjct: 118 KNVQLIVATPGRLLDHIERKTIDLKTVKTFVLDEADQMLFMGFKNEVEKIMEQMSKKKQM 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++  ++ +P  I V        +I+   V T  +  +          
Sbjct: 178 LCFSATMDSEVKKLAYRYMNDPAIISVKKEEVDMHSIKQFVVETTDRQKRDALCKVLDED 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       IIFC  K+   +L   +  + ++   IH +I Q  R +I+ +F+E  +Q ++
Sbjct: 238 NPFM---AIIFCRTKRRADDLETVMATRKYNCAKIHSDIAQNKRERIMKSFREAKLQYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V H++N+D+P   E+Y+HRIGRTGRAG  G     V  ++ + ++ I
Sbjct: 295 ATDVAARGLDITGVTHIYNYDIPETPESYVHRIGRTGRAGESGITCMFVDPKNKRALEEI 354

Query: 361 EKLIEKKVDWLNGDL 375
           E  I  K+   + +L
Sbjct: 355 EDTIGFKIPRRSVEL 369


>gi|56477451|ref|YP_159040.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
 gi|56313494|emb|CAI08139.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
          Length = 463

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 149/370 (40%), Positives = 221/370 (59%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F +LGL   ++ A+   GY  PT +Q + IP  L   D+   + TG+GKTA+F LP +
Sbjct: 1   MTFQELGLHEALLQAIATTGYTVPTSVQEQAIPAALAGADLMVSSHTGSGKTAAFTLPSL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
             ++++  A    PR L+L PTRELA QV    + Y +N      A L+GG PF AQ K 
Sbjct: 61  HRLIDRKPAPGAGPRVLVLTPTRELAQQVEKAVKTYARNLRYLNTACLVGGAPFFAQAKL 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R  DV++ TPGR++DH NR KL +++IE+LV+DEADRMLDMGF+  I+ I +  P +R
Sbjct: 121 LSRPVDVVVATPGRLIDHLNRRKLKLSDIEVLVLDEADRMLDMGFVEDIETIVAATPASR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+   +  ++    +NP+RIE+         IE   +       K    L + 
Sbjct: 181 QTLLFSATLDGVVGNLARKMTRNPQRIEIAATVENRANIEQRLLMADNIVHKNR--LLES 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   D ++  ++F   K+    +  +L+++GFS  A+HG++ Q +R + L   ++G I +
Sbjct: 239 LLGGDDLQQAVVFTATKRGAEEVSLNLQEKGFSAAALHGDMHQTARNRTLDKLRQGRIGV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + HV NFD P + E+Y+HRIGRTGRAGR G A T     ++  I 
Sbjct: 299 LVATDVAARGIDVAGISHVINFDAPRQVEDYVHRIGRTGRAGRDGIAITFSGPREMGIIR 358

Query: 359 AIEKLIEKKV 368
           AIE+   K +
Sbjct: 359 AIERFTGKPL 368


>gi|213963177|ref|ZP_03391435.1| ATP-dependent rna helicase, dead/deah box family [Capnocytophaga
           sputigena Capno]
 gi|213954261|gb|EEB65585.1| ATP-dependent rna helicase, dead/deah box family [Capnocytophaga
           sputigena Capno]
          Length = 584

 Score =  158 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 130/372 (34%), Positives = 210/372 (56%), Gaps = 9/372 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLP 58
           M+ F  LGL   ++ A+ D G+  P+ IQ K IP +L    D+  +AQTGTGKTA+F  P
Sbjct: 1   MNLFEQLGLDEPILKAISDMGFEIPSEIQQKAIPTLLANGADMVALAQTGTGKTAAFGFP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNK 117
           +L +++      R+ + LIL PTREL  Q+A     Y K       + + G    E Q +
Sbjct: 61  LLQLIDT---DSRVTQGLILSPTRELCLQIASELRNYAKYLPKVNVVAVYGGASIEEQAR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++GA +++ TPGR+ D   R  + +++I   V+DEAD ML+MGF   I  I S  P  
Sbjct: 118 SLKKGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILSHTPQE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           + T LFSATM +E+ K++  F++ P  I V T +    T++H     Y    +      +
Sbjct: 178 KSTWLFSATMPNEVAKIARKFMRKPIEITVGTRNQATNTVQH---EYYIVSGRHRYQALK 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   +     ++FC  K++   +   L + G++  A+HG++ Q  R  ++ +F+   IQ
Sbjct: 235 RLADANPDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ D+ HV ++ +P+  E Y HR GRTGRAG+ G +  ++ K ++K I
Sbjct: 295 MLVATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVILPKSEVKKI 354

Query: 358 DAIEKLIEKKVD 369
             IEK+I +  +
Sbjct: 355 KTIEKMIGQPFE 366


>gi|72546967|ref|XP_843148.1| ATP-dependent DEAD-box RNA helicase [Leishmania major strain
           Friedlin]
 gi|323363662|emb|CBZ12667.1| putative ATP-dependent DEAD-box RNA helicase [Leishmania major
           strain Friedlin]
          Length = 405

 Score =  158 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 115/377 (30%), Positives = 194/377 (51%), Gaps = 8/377 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +  L  ++   + + G+ KP+P+Q + IP+ LQ  DV   A+ GTGKTASFV+P+L
Sbjct: 30  VNFEEYALRRELQMGIFEKGFEKPSPVQEEAIPVALQGKDVLARAKNGTGKTASFVIPVL 89

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKL 119
             ++    R    + L++ PTRELA Q A   ++ GK+     V +  GG        +L
Sbjct: 90  EKVDT---RELYVQALLMVPTRELALQTAQVTKELGKHIPGLEVMVTTGGTTLRDDILRL 146

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LD  ++  + +++  ILV+DEAD++L   F+  I ++ + +P   Q
Sbjct: 147 TSKVHILVATPGRVLDLASKKAVDLSHCHILVLDEADKLLSQEFMEIIDDLYTYLPSQLQ 206

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           ++LFSAT    ++     F +               T++           ++       L
Sbjct: 207 SMLFSATFPVTVKT----FAERHLHNPYEINLMDELTLKGVTQYYAFVEERQKIHCLNTL 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++  +   IIFCN    V  L   + + G+S   IH  + Q+ R ++  +F+EG  + +
Sbjct: 263 FNKLQINQSIIFCNSVNRVELLAKKITQLGYSCYYIHARMQQQHRNRVFHDFREGHCRNL 322

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A   V  +D  ++  
Sbjct: 323 VCSDLITRGIDIQAVNVVINFDFPKYAETYLHRIGRSGRFGHLGVAINFVTYDDRYNVYR 382

Query: 360 IEKLIEKKVDWLNGDLS 376
           IE+ ++ ++  +  ++ 
Sbjct: 383 IEQELDTEIKPIPAEID 399


>gi|146283021|ref|YP_001173174.1| ATP-dependent RNA helicase SrmB [Pseudomonas stutzeri A1501]
 gi|145571226|gb|ABP80332.1| ATP-dependent RNA helicase SrmB [Pseudomonas stutzeri A1501]
          Length = 455

 Score =  158 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 131/368 (35%), Positives = 194/368 (52%), Gaps = 1/368 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L  +++ AV +  +V+PTP+Q+  IP  L+  D+   AQTG+GKTA+FVLPML  
Sbjct: 14  FDQFALHERLLKAVAELKFVEPTPVQVAAIPPALEGRDLRVTAQTGSGKTAAFVLPMLNR 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L          R LIL PTRELA Q     E++ +   +   L+ GG  F+ Q   L + 
Sbjct: 74  LIGDAQPRVDVRALILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 133

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLI TPGR+++H N G L++ ++EILVIDEADRMLDMGF   +Q +       +QTLL
Sbjct: 134 PDVLIGTPGRLIEHLNAGSLILKDVEILVIDEADRMLDMGFAEDMQRLVGECQKRQQTLL 193

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT +                + +     +            A        L   L + 
Sbjct: 194 FSAT-SGGAGLREMVAKVLRDPLHLQLNRVSELNESTRQQIITADDVAHKEKLVHWLLAN 252

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           ++ +  +IF N +     L   L      V  +HG  DQ+ R   +   K+G ++++VA+
Sbjct: 253 ESYQKAVIFTNTRAQADRLYGHLVASDIKVFVLHGEKDQKERKLAIERLKQGGVKVLVAT 312

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + +IE+
Sbjct: 313 DVAARGLDIEGMDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHNDWNLMSSIER 372

Query: 363 LIEKKVDW 370
            ++++ + 
Sbjct: 373 YLKQRFEK 380


>gi|320093766|ref|ZP_08025614.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979303|gb|EFW10798.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 800

 Score =  158 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 145/378 (38%), Positives = 215/378 (56%), Gaps = 10/378 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL  +++ AV D G+V PTPIQ + IP +L   DV GIAQTGTGKTA+F LP+L
Sbjct: 50  VSFADLGLPDELLQAVTDMGFVTPTPIQAEAIPPLLDLRDVVGIAQTGTGKTAAFGLPLL 109

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
            I++     V+    L+L PTRELA Q A   E +       V + +  G P+  Q   L
Sbjct: 110 AIVDADEKAVQ---ALVLAPTRELAMQSAAAIEDFAARTAELVVVPVYGGSPYGPQIGAL 166

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA V++ TPGR++D   +G L ++ + +LV+DEAD ML MGF   ++ I S  P  R 
Sbjct: 167 KRGAQVVVGTPGRVIDLIEKGALDLSGVRMLVLDEADEMLRMGFAEDVETIASSAPDDRL 226

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK------CA 233
           T LFSATM   ++KV+   L++P ++ V+  SST +TI   +     ++           
Sbjct: 227 TALFSATMPPAIEKVAREHLKDPVKVAVSEESSTVDTIHQTYAVVPYKHKIGALSRVLAT 286

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
             Q +   Q+     I+F   + +V  +   L  +GF    I G++ Q  R +++   K 
Sbjct: 287 RAQHIAAGQEDADAAIVFVRTRVDVEEVSLELSGRGFRAAGISGDVAQTERERMVERLKS 346

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G++ ++VA+D+AARGLD+  +  V NFDVP   E Y+HRIGRTGRAGR G++ T     +
Sbjct: 347 GSLDVLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTGRAGRQGRSLTFFTPRE 406

Query: 354 IKHIDAIEKLIEKKVDWL 371
              +  IEKL    ++ +
Sbjct: 407 HTRLRRIEKLTGTPMEEV 424


>gi|311030272|ref|ZP_07708362.1| putative ATP-dependent RNA helicase [Bacillus sp. m3-13]
          Length = 510

 Score =  158 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 158/443 (35%), Positives = 243/443 (54%), Gaps = 21/443 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LG+   V  ++   G   PTPIQ +TIP VL+ HDV   AQTGTGKT +FVLP+L 
Sbjct: 3   DFLKLGIRKGVNHSLKSMGINAPTPIQERTIPAVLEGHDVIAQAQTGTGKTLAFVLPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++      +    LIL PTRELA Q+    +   +N +    L + G     +Q KKL+
Sbjct: 63  KVDVNNPETQA---LILTPTRELAHQITKEIKNLKENIDDLQVLAVYGGQDVNSQLKKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V++ TPGR+LDH  RG + ++ I +LVIDEAD+ML MGF+P I  IT+ +  +RQT
Sbjct: 120 GAQHVIVATPGRLLDHVRRGTIDLSTISMLVIDEADQMLLMGFLPDIDTITAEIFASRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ +E+  +++ +++ PK I++     T  +I H  V T  +  +   L      
Sbjct: 180 MLFSATIPNEIHALAKKYMKQPKHIQIAEKQVTVASINHYAVETTDRRKEGTMLHL---I 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      IIFC  K  V  L   L+ +G    A+HG+I Q  R + +  F+E  +Q +V
Sbjct: 237 KEHNPYLAIIFCRTKARVQKLTEVLKHEGVECEALHGDIPQSKRNRAMKWFREAKLQYLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV+N+D+P   E YIHR GRTGRA   G+A+TL A  D+  +  I
Sbjct: 297 ATDVAARGLDVEGVTHVYNYDIPQDLETYIHRTGRTGRASGSGEAYTLFAPRDVDFLQMI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EK IE               PLEK+     +   +++   +++    + ++  + +K   
Sbjct: 357 EKGIEM--------------PLEKLVFKGISIPDRDDYEEERNVNIAKARREKARKKILP 402

Query: 421 PLKESEKISKLQQDIQENDADSL 443
                ++   +Q +I+ ++A+ L
Sbjct: 403 TKISRDRKEVVQMNIKGHEAEKL 425


>gi|117620545|ref|YP_858124.1| ATP-dependent RNA helicase SrmB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561952|gb|ABK38900.1| ATP-dependent RNA helicase SrmB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 407

 Score =  158 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 128/387 (33%), Positives = 203/387 (52%), Gaps = 7/387 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L+P +  A+ + G+ +PT IQ   +   L   D+   A TGTGKTA+F+LP L 
Sbjct: 4   SFDDFDLNPALNRALAEMGFSRPTTIQQMVLEPALDGRDILASAPTGTGKTAAFLLPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L     R   P  + +L PTRELA QV  + +    + NL++  +IGG+  E Q   L 
Sbjct: 64  HLLDFPRRKPGPCRMLVLTPTRELALQVTAHAKALAAHTNLSIETIIGGVSHEEQLPALT 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+++ TPGR+L++  + +   ++IE+LV+DEADRMLDMGFI  +  I     + + T
Sbjct: 124 KTTDIVVATPGRLLEYIEKEEFESHDIEVLVLDEADRMLDMGFIKDVNRIVEEARYRKHT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ +             + +E++     +E          A  +     L   + 
Sbjct: 184 MLFSATL-EGAGLEKFANDILKEPVELHAEPPRSERRPITQWVHLADDAAHKLALLVHIL 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  IIF   ++ +  L   L+  G S   I G ++Q  R++ +  F EG +  ++
Sbjct: 243 KDPETQKAIIFVKTRERLAELSGQLQAAGVSCAWIRGEMEQSKRIESIRKFHEGEVPFLI 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+P+V HV N+D+P  A+ Y+HRIGRTGRAG  G A +LV   D+  +  I
Sbjct: 303 ATDVAARGIDLPNVSHVINYDMPYGADVYVHRIGRTGRAGNRGCAISLVEAHDMAMVAKI 362

Query: 361 EKLIEKK-----VDWLNGDLSSLNPPL 382
           E+  E++     +D L         P+
Sbjct: 363 ERYTEERLKRRVIDELRPKHKEARVPV 389


>gi|49475813|ref|YP_033854.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
 gi|49238621|emb|CAF27864.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
          Length = 460

 Score =  158 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 152/431 (35%), Positives = 234/431 (54%), Gaps = 9/431 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  +V  +  AG  KP PIQ + IP++L+ HD+ GIAQTG+GKT +F LP+L+ 
Sbjct: 9   FTKLGLSALLVKNLTIAGMSKPKPIQEQAIPMMLKGHDILGIAQTGSGKTLAFSLPILSQ 68

Query: 63  LEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     +         IL PTRELA Q+ +      K  +L+  L+ GG+    Q K++E
Sbjct: 69  ILALGDKRFPKTARALILAPTRELAVQIDETIRAVAKGTHLSTCLIFGGVSRLKQIKRME 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+LI TPGR+ D      + ++    L++DEADRMLDMGFI  I++I  L+   RQT
Sbjct: 129 AGVDILIATPGRLRDLIREKYVDLSQSRFLILDEADRMLDMGFIHDIRHIVKLLHQVRQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  +++  L +P +IEV+   +TA  I            K          
Sbjct: 189 ALFSATMPKEITTLAKCLLNDPVKIEVSPQGTTAAEIAQKLYCVPTCEKKNVLGKLL--- 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +     + I+F   K     +  +L  +G+SV  IHGN  Q +R   L  F+E +++++V
Sbjct: 246 TNPDFVSVIVFTRTKYCADAVTRNLASRGYSVATIHGNKSQSARQSALKAFRERSVRILV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+DIP + HV N+D+P+ AE+Y+HRIGRTGR G  G+A TL  +  +   + A
Sbjct: 306 ATDIAARGIDIPGISHVINYDLPDEAESYVHRIGRTGRNGASGEALTLFDEGVEQMRLRA 365

Query: 360 IEKLIEKKV--DWLNGDLSSLN-PPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +E+LI  ++  + +    ++    PL    I + N    +    ++   F   K N +  
Sbjct: 366 VERLICMRLVRETIPEQFAAFPEKPLVIEGIEKENIKGPHFRKSKRQKWFKSHKDNAAQS 425

Query: 417 KSHIPLKESEK 427
           +      +SE+
Sbjct: 426 EGRKSSSQSER 436


>gi|219686271|dbj|BAH08688.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Pagrus major]
          Length = 631

 Score =  158 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 203/388 (52%), Gaps = 13/388 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 196 MTFDEAGLCESLRKTVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 255

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + ++ P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 256 QQLMADGVAASSFSELQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGVSTGY 315

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
           Q ++L RG +VL  TPGR++D   RGK+ ++ +  LV+DEADRMLDMGF P ++      
Sbjct: 316 QIRELCRGCNVLCGTPGRLMDVIGRGKVGLSKLRYLVLDEADRMLDMGFEPAMRRLVGSP 375

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  D++Q++  +FL+             A            ++SK
Sbjct: 376 GMPSKENRQTLMFSATYPDDIQRMGADFLKTDYLFLAVGVVGAACNDVEQTFVQVTKFSK 435

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L   L  +    +  ++F   K+    +   L ++     +IHG+ +QR R   L++
Sbjct: 436 REQLFDLLKTTGT--ERTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQRERELALAD 493

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   +MVA+ +AARGLDIPDV HV NFD+P   + Y+HRIGRTGR G  G+A +   
Sbjct: 494 FRSGKCPVMVATSVAARGLDIPDVQHVVNFDLPKDIDEYVHRIGRTGRCGNTGRAVSFYD 553

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSS 377
            E D +    +  ++ K    +   L  
Sbjct: 554 PEADGQLARPLVTILSKAQQEVPSWLEE 581


>gi|207347082|gb|EDZ73384.1| YDL160Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256273565|gb|EEU08498.1| Dhh1p [Saccharomyces cerevisiae JAY291]
 gi|259145084|emb|CAY78348.1| Dhh1p [Saccharomyces cerevisiae EC1118]
 gi|323334302|gb|EGA75683.1| Dhh1p [Saccharomyces cerevisiae AWRI796]
          Length = 506

 Score =  158 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 115/376 (30%), Positives = 187/376 (49%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L  +++  + +AG+ KP+PIQ + IP+ +   D+   A+ GTGKTA+FV+P L 
Sbjct: 47  TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 106

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    ++   + LI+ PTRELA Q +      GK+  ++  +  GG        +L  
Sbjct: 107 KVKP---KLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNE 163

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD  +R    +++  + ++DEAD+ML   F   I+ I S +P T Q+L
Sbjct: 164 TVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPSTHQSL 223

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++    F+                T++           ++       L S
Sbjct: 224 LFSATFPLTVKE----FMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFS 279

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   +   G+S    H  + Q+ R K+   F++G ++ +V 
Sbjct: 280 KLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVC 339

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+   D  ++  IE
Sbjct: 340 SDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIE 399

Query: 362 KLIEKKVDWLNGDLSS 377
           + +  ++  +   +  
Sbjct: 400 QELGTEIAAIPATIDK 415


>gi|145352838|ref|XP_001420742.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580977|gb|ABO99035.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 413

 Score =  158 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 122/380 (32%), Positives = 191/380 (50%), Gaps = 2/380 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           M+F        ++ AV  AGY +PT IQ ++ P+ LQ +D+  +A+TG+GKT +F+ P  
Sbjct: 2   MNFDAGPWPKPLLDAVKRAGYTEPTAIQSQSWPIALQGYDMISVAKTGSGKTVAFLFPGL 61

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           M           R P  L L PTRELA Q+ +   K+G +  +    L GG P   Q ++
Sbjct: 62  MHIAERGNGRNARGPMMLALAPTRELATQIQEECMKFGSSCGVGSVCLYGGAPKGRQLQQ 121

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L     + I TPGR+ D      + M++   +V+DEADRMLDMGF P I+ I   VP  R
Sbjct: 122 LRNRPQICIATPGRLNDLLESRMVDMSSATYVVLDEADRMLDMGFEPQIRKILQHVPVDR 181

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL F+AT    + +V+   L NP ++ +          +           +K   L ++
Sbjct: 182 QTLFFTATWPKAVIRVATAILTNPIQVNIGDTDQLVANKDITQTIEVCSGFEKEKRLMEI 241

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +     + +                   G     IHG+ +QR R  IL+ F++G   +
Sbjct: 242 LNNPPEGCDPLKALVFCSTKRMCDQLGRSVGNLAGIIHGDKEQRERDWILNQFRQGRTPV 301

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ D   V N+D PN+ E+Y+HRIGRTGRAG+ G AF+ +   +     
Sbjct: 302 LVATDVAARGLDVKDCNLVINYDFPNQIEDYVHRIGRTGRAGKKGWAFSFIDGGEGNMAR 361

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++      ++ ++  +
Sbjct: 362 KLIPILRDANQIVSPEIEEM 381


>gi|254819463|ref|ZP_05224464.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium intracellulare ATCC 13950]
          Length = 567

 Score =  158 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 141/370 (38%), Positives = 211/370 (57%), Gaps = 7/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL + P V+ AV D GY  PT IQ  TIP ++   DV G+AQTGTGKTA+F +P+L+
Sbjct: 14  TFADLQIHPSVLRAVADVGYESPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILS 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++      +    L+L PTRELA QVA+ F +YG +      L I  G  +  Q   L 
Sbjct: 74  KIDVTSTATQ---ALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYSVQLAGLR 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  RG L +++++ LV+DEAD ML MGF   +  I S  P  +Q 
Sbjct: 131 RGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQV 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++K++  +L +P  +     ++TAE I   ++                ++
Sbjct: 191 ALFSATMPPAIRKLTTKYLHDPLEVSTKAKTATAENISQRYIQVAGPRKMDALTRVLEVE 250

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + M   +      + V     +   +GFS  AI+G+I Q  R + ++  K+G+I ++V
Sbjct: 251 PFEAMIVFVRTKQATEEVAEKLRA---RGFSAAAINGDIPQGQRERTVAALKDGSIDILV 307

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  +   + AI
Sbjct: 308 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLKAI 367

Query: 361 EKLIEKKVDW 370
           EK   + +  
Sbjct: 368 EKATRQTLTE 377


>gi|313213311|emb|CBY37141.1| unnamed protein product [Oikopleura dioica]
          Length = 499

 Score =  158 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 141/381 (37%), Positives = 218/381 (57%), Gaps = 4/381 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F + G+   ++  V  AGYV PT IQ ++ P+ L   D+ GIA+TG+GKT +FVLP  
Sbjct: 55  LQFMEAGIPDYLMGTVTAAGYVTPTTIQSQSWPIALSGADMQGIARTGSGKTLAFVLPSI 114

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  + +        P  +IL PTRELA QV +  E++GK   +    + GG    AQ   
Sbjct: 115 IHIMAQPDLRPGDGPVAVILAPTRELAKQVQEVAEQFGKPCGVNTVAVYGGADKRAQIGA 174

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERGA +++  PGR+LD    G+  ++    L++DEADRMLDMGF P I+ I   +   R
Sbjct: 175 LERGAHIVVACPGRLLDLIQSGRTNLHRTTFLILDEADRMLDMGFEPQIRKIVGQIRQDR 234

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT   E+QK++ +F++ P +I +     TA       V   + + K        
Sbjct: 235 QTLMFSATWPKEIQKLASDFMKTPTQIFIGNQELTANPNIEQVVEVVSDFDKAMRFN--Y 292

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q T    ++F + K++  NL +++        AIHG+ DQR R ++L +F+ G I +
Sbjct: 293 WFQQITSTKILVFTDTKRDCDNLAYTMSNGRVRCAAIHGDKDQRERERVLKDFRNGQISV 352

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+G V N+D P++ E+Y+HRIGRT R  + GK+ + +  +  KH  
Sbjct: 353 LVATDVAARGLDIDDIGTVINYDFPSQLEDYVHRIGRTARGEKKGKSISFITAKSAKHAS 412

Query: 359 AIEKLIEKKVDWLNGDLSSLN 379
           A+ KL+E+    +  +L  L+
Sbjct: 413 ALVKLLEQAKQHVPPELVQLS 433


>gi|313674606|ref|YP_004052602.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312941304|gb|ADR20494.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 405

 Score =  158 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 135/401 (33%), Positives = 216/401 (53%), Gaps = 13/401 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +L   P +   +   G+ K TPIQ + IP +L+  D+   AQTGTGKTA+FVLP+L
Sbjct: 1   MEFKELNFHPTLSEGLEMMGFQKATPIQTEAIPKILEGKDLIACAQTGTGKTAAFVLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +       +   TLI+ PTREL  Q+    E +    N +   + GG    A  ++ +
Sbjct: 61  HKIANSG-ETKGVNTLIIAPTRELVQQIDQQIEGFSYFTNASSIAIYGGGDGAAWEQQKK 119

Query: 121 RGA---DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 D+L+ TPGR++   N  +  ++N++ L++DEADRMLDMGF   I  I   +P  
Sbjct: 120 AIRAGVDILVATPGRLIALLNSNETQLDNVQHLILDEADRMLDMGFHDDIMRIVKQLPQK 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM  +++K++   L NP+ I ++     ++         +  Y      L +
Sbjct: 180 RQTLLFSATMPPKIKKLAGAILNNPEEISLS----ISKPAAGISQKAFLTYDGHKTQLLK 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +      +  I+F  +K  V +L   L+  G SV A   ++DQ+ R  I+ +F+   +Q
Sbjct: 236 FILGSGIYETAIVFAGKKDKVKSLERDLKDIGMSVKAFSSDLDQKEREIIMRDFRAKKVQ 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ +D+ +RG+D+ ++  V N+DVP   E+Y+HRIGRT RA   G+A T + + D++  
Sbjct: 296 VLIGTDIISRGIDVENISLVVNYDVPGDPEDYVHRIGRTARAATKGEAITFINEMDMEKF 355

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           + IE LIEK +   N    SL   + +    + N ARK  P
Sbjct: 356 NRIEALIEKSIMKTN----SLPNQIGQGPEYEEN-ARKRKP 391


>gi|328720638|ref|XP_001950474.2| PREDICTED: probable ATP-dependent RNA helicase DDX49-like
           [Acyrthosiphon pisum]
          Length = 470

 Score =  158 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 126/432 (29%), Positives = 200/432 (46%), Gaps = 10/432 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +L LS  +   +   G   PT IQ   IP +L   D  G A+TG+GKT +F LP+L
Sbjct: 1   MNFENLNLSKYLCDQLKAVGVNSPTEIQKNCIPKILDGIDCIGCAKTGSGKTLAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L            LIL PTRELA Q+AD F   GK  NL   ++ GG+    Q ++L 
Sbjct: 61  QKL---WEEPYGIFALILTPTRELAYQIADQFAVIGKPKNLRHCVVTGGMEMIVQARELS 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ DH              ++ +    L  G                + 
Sbjct: 118 NKPHIVVSTPGRLADHLESCDTFSLKRIQFLVLDEADRLLGGKFDKQIATIFKALPKERQ 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            L  +    +  +  +   +    +  +T           F        K   L++ + Q
Sbjct: 178 TLLFSATMTDTLEKVKMITKKNTFVYESTAEVKTVDELEQFYVLCPYNVKDGYLVEIVRQ 237

Query: 241 SQDTMKNGIIFCN--QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            ++  + G+I       KN   L  +L + GF   ++H  I QR R+  L+ FK    ++
Sbjct: 238 FREKDEKGLIMIFTDTCKNCQLLHMTLNEVGFDTVSLHAMISQRQRLAGLAKFKSHVSKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLDIP V  V N  +PN A +Y+HR+GRT RAGR G+A ++V + DIK + 
Sbjct: 298 LIATDVASRGLDIPAVSLVINHIIPNNATDYVHRVGRTARAGRQGRAVSIVTQHDIKLVK 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           AIE  I  ++     D+S L+  + KI + Q +  ++   I    T FD R+     +K 
Sbjct: 358 AIEAKINIRLKEY--DVSGLH--VAKI-LTQVHVTKREAQIKLDETDFDERRLINKRKKL 412

Query: 419 HIPLKESEKISK 430
               K+ +K+ +
Sbjct: 413 INEGKDPDKVEQ 424


>gi|219888343|gb|ACL54546.1| unknown [Zea mays]
          Length = 525

 Score =  158 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 114/375 (30%), Positives = 196/375 (52%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 152 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 211

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++        + +IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 212 KIDQ---EKNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRLYQ 268

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++N+  +L++DEAD++L   F P I+ +   +P +RQ L
Sbjct: 269 PVHLLVGTPGRILDLTKKGVCILNDCSMLIMDEADKLLSPEFQPSIEQLIRYLPASRQIL 328

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +++  + +L  P  I          T++           ++       L S
Sbjct: 329 MFSATFPVTVKEFKDKYLPKPYVI----NLMDELTLKGITQFYAFVEERQKVHCLNTLFS 384

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 385 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 444

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 445 TDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 504

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 505 QELGTEIKSIPPQID 519


>gi|156553787|ref|XP_001602045.1| PREDICTED: similar to GH10652p [Nasonia vitripennis]
          Length = 682

 Score =  158 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 129/380 (33%), Positives = 203/380 (53%), Gaps = 3/380 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + G    V+  +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP +  
Sbjct: 154 FEEGGFPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 213

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA Q+      +G +  +    + GG P   Q + LE
Sbjct: 214 INNQPRLQRGDGPIALVLAPTRELAQQIQQVAADFGVSSQVRNTCIFGGAPKGPQARDLE 273

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 274 RGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT 333

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK-CALLQQLL 239
           L++SAT   E++ ++E FL +  +I + +    A       V    +Y K+   +     
Sbjct: 334 LMWSATWPKEVRNLAEEFLTDYIQINIGSLQLAANHNILQIVDVCEEYEKEGKLMKLLEE 393

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            SQ+     IIF   K+ V  +  ++ + G+    IHG+  Q+ R  +L+ F+     ++
Sbjct: 394 ISQEAENKTIIFVETKRKVDEITRAINRYGWQAIGIHGDKSQQERDYVLNQFRSSRSAIL 453

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV  V N D P+ +E+Y+HRIGRTGR+ R G A+      +    + 
Sbjct: 454 VATDVAARGLDVEDVKFVINLDYPSNSEDYVHRIGRTGRSQRTGTAYAFFTPGNAHKAND 513

Query: 360 IEKLIEKKVDWLNGDLSSLN 379
           + +++E+    +N  L  L+
Sbjct: 514 LIQVLEEAKQVVNPKLYELS 533


>gi|32477297|ref|NP_870291.1| ATP-dependent RNA helicase rhlE [Rhodopirellula baltica SH 1]
 gi|32447848|emb|CAD77366.1| putative ATP-dependent RNA helicase rhlE [Rhodopirellula baltica SH
           1]
          Length = 485

 Score =  158 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 149/387 (38%), Positives = 214/387 (55%), Gaps = 17/387 (4%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F DLGL+  ++  +  AGY  PTPIQ ++IP +L  +DV G AQTGTGKTA+F LP+
Sbjct: 1   MNKFEDLGLTGPLLQGLEQAGYETPTPIQAQSIPEILDGNDVLGAAQTGTGKTAAFALPI 60

Query: 60  LTILEKGRARVRMPRTL-------------ILEPTRELAAQVADNFEKYGKNYNLTVALL 106
           L I+ +     R P                +L PTREL+AQ+  NF  YGK   L   ++
Sbjct: 61  LQIMWEDDQERREPSKRRGGRPGRRPIRTLVLSPTRELSAQIEANFRIYGKKTRLRSTVI 120

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG+    Q ++L+ G D L+ TPGR+LD  N+G + + ++EILV+DEAD MLDMGF+P 
Sbjct: 121 FGGVNQNPQVRELQSGVDTLVATPGRLLDLVNQGFIDLKDVEILVLDEADHMLDMGFLPD 180

Query: 167 IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
           ++ I   +P  RQ LLFSATM   ++K+++  L +P  I++     T E IE        
Sbjct: 181 VKRILKFLPRDRQNLLFSATMPGPIRKLADEILVDPVTIQIAPQKPTVERIEQSICFVAQ 240

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
                   L           + ++F   K     +   L K G    AIHGN  Q +R++
Sbjct: 241 ADK---PRLLNHFIETKATGSTLVFTRTKHGADAVARRLVKAGVKAAAIHGNKTQANRVR 297

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L+ FK   + ++VA+D+AARG+DI  +  V N+D PN  E Y+HRIGRTGRAGR G+  
Sbjct: 298 TLNKFKNDELDVLVATDVAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRAGREGETV 357

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNG 373
                 + K   AIE+ I+ ++    G
Sbjct: 358 MFCGGHETKFFIAIEREIKLQIPVATG 384


>gi|294898580|ref|XP_002776285.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239883195|gb|EER08101.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 654

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 123/384 (32%), Positives = 202/384 (52%), Gaps = 7/384 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  L   ++  +  AG+V PTPIQ++  P+ L   D+ GIA+TG+GKT +F+LP + 
Sbjct: 200 QFEEACLPDYIMVEIQKAGFVSPTPIQVQGWPVALSGRDMVGIAETGSGKTLAFLLPAVV 259

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       +   P  L+L PTRELA Q+ +  +++G++  ++     GG+P   Q + L
Sbjct: 260 HINAQPYLQKGDGPIVLVLAPTRELALQIKEECDRFGRSSRISNTCCYGGVPRGPQARML 319

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++ I TPGR++D        +  +  LV+DEADRMLDMGF P ++ I S +   RQ
Sbjct: 320 QNGVEICIATPGRLIDFLESEVTNLRRVTYLVLDEADRMLDMGFEPQVRKIVSQIRPDRQ 379

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   ++Q+++ +             S  A      FV    +  K   L   + 
Sbjct: 380 TLMWSATWPKDVQQLARDLCNEEPVHVTVGQSGHACHNIQQFVEVVEENVKSERLQALMR 439

Query: 240 QS-----QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
                         +IF + K+   ++   L + G+   +IHG+  Q  R  +L+ FK G
Sbjct: 440 AVASASGGVFDAKALIFTDTKRCADDITRVLRRDGWPALSIHGDKKQSERDWVLAEFKSG 499

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + +M+A+D+A+RGLD+ DV +V N+D P   E+Y+HRIGRTGRAG HG A++    +  
Sbjct: 500 RMPIMIATDVASRGLDVKDVKYVINYDFPGTVEDYVHRIGRTGRAGAHGTAYSFFTADKA 559

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL 378
           K    +  ++ +    +   L  L
Sbjct: 560 KLAKPLIGILREASQPVPEALERL 583


>gi|332532711|ref|ZP_08408587.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037927|gb|EGI74376.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 415

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 166/415 (40%), Positives = 237/415 (57%), Gaps = 10/415 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L P ++ A+    Y +PT IQIKTIP +L   DV G AQTGTGKTA+FVLP+L 
Sbjct: 5   TFSSLNLDPLLLTAIEQNNYTQPTAIQIKTIPPILAGSDVMGSAQTGTGKTAAFVLPLLH 64

Query: 62  ILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L     +      R +IL PTRELA QV  +FEKY +  N+  AL  GG     Q K L
Sbjct: 65  KLLNTPKKDEQGLARVVILTPTRELAQQVFASFEKYAQGTNINGALAYGGASIGPQIKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    + + TPGR+LDH  +G +++++++ LV DEADRMLDMGFI  I+ I   +P  RQ
Sbjct: 125 KTAQVI-VATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIRRILRHIPGDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  D + ++S+  L+NP+ IEV+  +S A  +E    A      ++       +
Sbjct: 184 TLLFSATFDDSVFELSKKLLKNPELIEVDKRNSAAVEVEQVIYAVDEDRKRELVSH---M 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  +IF   K+    L   + K G    +IHG+  Q +R + L NFKEG  +++
Sbjct: 241 IGMKNWRRVLIFTRTKQMADQLAKEMCKDGLKTESIHGDKSQGARDRALQNFKEGITRVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + +V NF++P  AE+Y+HRIGRTGRAG  G A +LV+ ++   ++ 
Sbjct: 301 VATDVAARGLDISTLRYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSLDEQWLLEE 360

Query: 360 IEKLIEKKV--DWLNGDLSSLN--PPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           IE L++ ++   WL G    LN  P   + +  +    R    I  K     RRK
Sbjct: 361 IEVLLDTRLTPQWLEGYEPDLNKKPKDNRKNTNKSRKDRDKKRITGKREPSRRRK 415


>gi|292558860|gb|ADE31861.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           suis GZ1]
          Length = 502

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 148/404 (36%), Positives = 230/404 (56%), Gaps = 20/404 (4%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
           AV  AG+  P+PIQ +TIPL L+  DV G AQTGTGKTA+F LP L  ++     ++   
Sbjct: 3   AVEKAGFETPSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLNKIDTNNQAIQS-- 60

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            LI+ PTRELA Q  +   K+G+   + V  + GG   E Q K L  GA +++ TPGR+L
Sbjct: 61  -LIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLL 119

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D   R  L ++ +E L++DEAD ML+MGF+  I+ I   VP +RQTLLFSATM + ++++
Sbjct: 120 DLIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPESRQTLLFSATMPEPIKRI 179

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
              F++ P+ +++     T   ++  ++                    D  +  I+F   
Sbjct: 180 GVKFMKEPEHVKIAAKELTNVNVDQYYLRVKEHEKFDTMTRL---MDVDQPELSIVFGRT 236

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K+ V  L   L+ +GF    IHG++DQ  R++++ +FK   I ++VA+D+AARGLDI  V
Sbjct: 237 KRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLVATDVAARGLDISGV 296

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
            HV+N+D+P   E+Y+HRIGRTGRAG+ G++ T V+  ++ ++  IE L +K++  L   
Sbjct: 297 THVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLAIIEDLTKKRMKGLKPA 356

Query: 375 ------LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
                  +     L+KI+    +   +NN        FD+ KK+
Sbjct: 357 TAEEAFEAKKKVALKKIEREMADETIRNN--------FDKFKKD 392


>gi|194468573|ref|ZP_03074557.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194454937|gb|EDX43776.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
          Length = 421

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 137/413 (33%), Positives = 207/413 (50%), Gaps = 10/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P+VV A+   G+   TPIQ   +PL L    V G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRYVAGQAQTGTGKTMAFLTSTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      +V  PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 AQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F  G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARK-NNPIPQKSTG 405
            AIE  I   +     +    ++ L  PL        N  R+   P  ++ +G
Sbjct: 369 PAIESYIGHSIPVSKYNPEALMNDLPKPLRLTRSRPGNGPRRAGAPRNRRRSG 421


>gi|17552114|ref|NP_498646.1| Conserved Germline Helicase family member (cgh-1) [Caenorhabditis
           elegans]
 gi|75020328|sp|Q95YF3|CGH1_CAEEL RecName: Full=ATP-dependent RNA helicase cgh-1; AltName:
           Full=Conserved germline helicase 1
 gi|15150636|gb|AAK85443.1|AC006605_5 Conserved germline helicase protein 1 [Caenorhabditis elegans]
          Length = 430

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 111/382 (29%), Positives = 188/382 (49%), Gaps = 10/382 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  L   ++  + + G+ KP+PIQ  +I + L   D+   A+ GTGKT ++ +P++
Sbjct: 43  VEFEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVI 102

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++  + +++ PTRELA Q +    +  K+  L V +  GG        +L 
Sbjct: 103 EKIQPA---LKAIQAMVIVPTRELALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLN 159

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGRILD   +G   M + + LV+DEAD++L   F   +  + + +P  RQ 
Sbjct: 160 GTVHLVIATPGRILDLMEKGVAKMEHCKTLVLDEADKLLSQDFQGILDRLINFLPKERQV 219

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L+SAT  + +      F+Q               T+            K+       L 
Sbjct: 220 MLYSATFPNTVTS----FMQKHMHKPYEINLMEELTLLGVTQYYAFVQEKQKVHCLNTLF 275

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F++G  + +V
Sbjct: 276 RKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLV 335

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  I
Sbjct: 336 CSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRHTLRRI 395

Query: 361 EKLIEKKVDWLNGDLSSLNPPL 382
           E+ +  +++ +     +++P L
Sbjct: 396 EQELRTRIEPIP---KTVDPKL 414


>gi|229514570|ref|ZP_04404031.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
 gi|229348550|gb|EEO13508.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
          Length = 452

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 122/394 (30%), Positives = 188/394 (47%), Gaps = 6/394 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + + T IQ + IPL +   D+   ++ G+GKT +FVLPML
Sbjct: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQHQAIPLTIAGRDLLASSRQGSGKTLAFVLPML 64

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR LIL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 65  HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG   ++ TPGR+ DH +   L +  +E LV+DEADRMLD+GF   ++ I +     R+
Sbjct: 125 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D             +   +     + E  +         +      L   +
Sbjct: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRI 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  IIF   + +   L   L +      A+ GN++Q  R  I+  F+    +++
Sbjct: 245 LADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDIP V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D +    
Sbjct: 305 VTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKR 364

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKIDIA 388
           +E  +++++ +     L G    L P   K   A
Sbjct: 365 VEAFLQQEIQFEVLAGLEGKFKGLKPRQVKPKAA 398


>gi|226307581|ref|YP_002767541.1| ATP-dependent RNA helicase DeaD [Rhodococcus erythropolis PR4]
 gi|229493790|ref|ZP_04387568.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121]
 gi|226186698|dbj|BAH34802.1| probable ATP-dependent RNA helicase DeaD [Rhodococcus erythropolis
           PR4]
 gi|229319289|gb|EEN85132.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121]
          Length = 591

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 146/372 (39%), Positives = 218/372 (58%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL +  +V+ A+ D GY  P+PIQ  TIP +L+  DV G+AQTGTGKTA+F +P+L+
Sbjct: 12  TFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLEGKDVVGLAQTGTGKTAAFAVPVLS 71

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     ++  + L+L PTRELA QVA+ F KY  +      L I  G  +  Q   L 
Sbjct: 72  RIDTS---IKQTQALVLAPTRELALQVAEAFGKYSAHIPGLNVLPIYGGQSYGVQLSGLR 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  +G L + N++ LV+DEAD ML MGF   ++ I    P  +Q 
Sbjct: 129 RGAHVVVGTPGRVIDHLEKGTLDLTNLKYLVLDEADEMLKMGFQEDVERILRDTPGDKQV 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++++S+ +L NP  I V + +STA  I   ++    Q           ++
Sbjct: 189 ALFSATMPGSIRRISKQYLNNPVEITVKSKTSTASNITQRYIQVAHQRKLDALTRVLEVE 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + M   IIF   K+   +L   L  +G S  AI+G+I Q  R + +   K G + ++V
Sbjct: 249 AFEAM---IIFVRTKQATEDLAEKLRARGHSAAAINGDIVQAQRERTIGQLKNGALDILV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   VA  +   + +I
Sbjct: 306 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRQGDALLFVAPRERHLLKSI 365

Query: 361 EKLIEKKVDWLN 372
           EK   + +  + 
Sbjct: 366 EKATRQPLAEMQ 377


>gi|239918236|ref|YP_002957794.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
 gi|239839443|gb|ACS31240.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
          Length = 731

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 147/374 (39%), Positives = 216/374 (57%), Gaps = 7/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL  +V+ AV D GY  P+PIQ  TIPL+L   DV G+AQTGTGKT +F LP L+
Sbjct: 73  TFLDLGLDARVLAAVEDLGYTAPSPIQEATIPLLLAGRDVVGLAQTGTGKTGAFALPALS 132

Query: 62  I---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNK 117
                     R   P+ L L PTRELA Q+A+ F+ Y K+      L +  G P+  Q  
Sbjct: 133 RLAEASDVNGRANAPQILALAPTRELALQLAEAFDAYAKHLGDVSVLAVYGGSPYGPQLS 192

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RGA V++ TPGR++DH  RG L ++ ++ LV+DEAD ML MGF   +  I +  P +
Sbjct: 193 ALRRGAQVVVGTPGRVIDHIERGSLDLSQLQTLVLDEADEMLRMGFAEEVDRILASTPAS 252

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QT LFSATM   ++++S  +L +P+ + V+  S+T+ TI   ++    QY  +      
Sbjct: 253 KQTALFSATMPPAIRRISAQYLNSPEEVAVSRQSTTSATIRQRYLQVGHQYKLEAMTRIL 312

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             +  + +   I F   +     L   L + GF   AI G+I Q+ R K + + K G + 
Sbjct: 313 ETEDHEGV---IAFVRTRAGTEELAQKLTRAGFKAVAISGDIAQKQREKTVEDLKTGRVD 369

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  + HV N+D+P  AE+Y+HRIGRTGRAGR G A   +   +   +
Sbjct: 370 ILVATDVAARGLDVERISHVINYDIPQDAESYVHRIGRTGRAGRQGDAVLFMTPRERFLL 429

Query: 358 DAIEKLIEKKVDWL 371
             IE+   ++V+ +
Sbjct: 430 KQIERTTRQQVEEM 443


>gi|109095724|ref|XP_001086352.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 3
           [Macaca mulatta]
          Length = 455

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 135/433 (31%), Positives = 218/433 (50%), Gaps = 7/433 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++  +  A    G+ KPT I I+ IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 25  TFKDLGVTDVLCEACDQLGWTKPTKILIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L +   R+     L+L PTRELA Q+++ FE  G +  +  A+++G            +
Sbjct: 85  ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      I    N     +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L+NP +  V++   T E ++          SK        + 
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ---YYIFIPSKFKDTYLVYIL 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI KK+         +    E++  AQ     +     +K         +    +  I
Sbjct: 379 EHLIGKKLPVFPTQDDEVMMLAERVAEAQRFARMELREHGEKKKRSREDAGDNDDTEGAI 438

Query: 421 PLKESEKISKLQQ 433
            ++      K+++
Sbjct: 439 GVRNKVAGGKMKK 451


>gi|255656171|ref|ZP_05401580.1| ATP-dependent RNA helicase [Clostridium difficile QCD-23m63]
          Length = 497

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 132/431 (30%), Positives = 229/431 (53%), Gaps = 11/431 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L+ K++ ++    Y  P+ +QI+ IP +L   ++   ++TG+GKTASF +P+  
Sbjct: 4   TFEKFKLNEKILKSLKSLEYNIPSRVQIEVIPKLLNGQNLVVKSKTGSGKTASFAIPLCE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +      ++    LI+ PTRELA QV D     G+   +  + + G  P + Q  +L++
Sbjct: 64  NINVEYNNIQA---LIVVPTRELALQVKDEISSIGRLRKVRCSAIFGKQPIKEQIAELKQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI+DH N+G + + NI+ L+IDEAD+M + GF+  ++ I   +P  +   
Sbjct: 121 RVHIVVATPGRIIDHINKGTIKLENIKYLIIDEADKMFNKGFVEQMEKILLNLPKEKIVG 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+ +E++ + E ++ +   I +      T +              ++  +L + L 
Sbjct: 181 LFSATIDEEIKYICEKYIPDYSVINIEENKSDTNQRTRQIDDKIIKTNEREKYILLKELI 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  K+ IIFCN K+ V  L + + K+GF +  +H ++ Q  R+ ++ +FK+    ++V
Sbjct: 241 YSENPKSVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKKQKFNVLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +SD+A+RG+ I D+  V N+DVP   ENYIHRIGRTGR    GKA T+V ++D K+I+ I
Sbjct: 301 SSDVASRGIHIDDISLVINYDVPQDKENYIHRIGRTGRKRNSGKAITIVTEKDEKYIENI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  I  K++ L  D+        KI   +++          K     ++    S +   I
Sbjct: 361 ETYIGYKINELK-DIEKSRITHGKILFEEYSKE------ILKEVSKRKKADKNSYKGKDI 413

Query: 421 PLKESEKISKL 431
            L    ++ KL
Sbjct: 414 KLNTESEVVKL 424


>gi|300113218|ref|YP_003759793.1| DEAD/DEAH box helicase domain-containing protein [Nitrosococcus
           watsonii C-113]
 gi|299539155|gb|ADJ27472.1| DEAD/DEAH box helicase domain protein [Nitrosococcus watsonii
           C-113]
          Length = 500

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 137/373 (36%), Positives = 207/373 (55%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F    +S  ++ A+   GY  PT IQ + IP +L  HD+ G AQTGTGKTA+F +P L
Sbjct: 8   LSFDSFAISAPILQAIKQVGYETPTLIQARAIPHLLAGHDLVGQAQTGTGKTAAFAIPTL 67

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             LE  R     P+ L+L PTRELA QVA+ F+ Y ++      L I  G     Q ++L
Sbjct: 68  ERLELSRRE---PQALVLVPTRELAIQVAEAFQSYARHLEDFHVLPIYGGQSMGNQLRQL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA V++ TPGRI+DH  R  L++  +  +++DEAD ML MGFI  ++ I   VP  RQ
Sbjct: 125 KRGAHVIVGTPGRIMDHLRRKSLILTTLTTVILDEADEMLKMGFIEDVEWILKQVPTKRQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   ++ ++   L  P+ I++   +++   I   +      +          +
Sbjct: 185 VALFSATMPTSVRNIASRHLHAPQDIKIKGKTASLPAINQRYWLVSGLHK---LDALTRM 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K     L   L  +G++  A++G++ Q SR K++   K+ TI ++
Sbjct: 242 LEAEEYDATIIFVRTKIATEELAKKLTARGYAAAALNGDMPQSSREKVVDQLKKNTIDII 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +GHV N+D+P     YIHRIGRTGRAGR G A   VA  + + + A
Sbjct: 302 VATDVAARGLDVKRIGHVVNYDIPYDTGTYIHRIGRTGRAGRTGTATLFVAPRERRMLSA 361

Query: 360 IEKLIEKKVDWLN 372
           I++   + +  + 
Sbjct: 362 IKRATGQPLYEMQ 374


>gi|255544624|ref|XP_002513373.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223547281|gb|EEF48776.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 442

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 142/438 (32%), Positives = 236/438 (53%), Gaps = 14/438 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+  ++V A  + G+  PT IQI++IP  L+  D+ G+AQTG+GKT +F LP+L 
Sbjct: 10  TFKELGVCDQLVTACDNLGWKNPTKIQIESIPHALEGKDLIGLAQTGSGKTGAFALPILQ 69

Query: 62  ILEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L +   + V+     +L PTRELA Q+A+ FE  G +  +  A+L+GG+    Q+  L 
Sbjct: 70  SLLEASEKSVQAFFACVLSPTRELAIQIAEQFEALGSDIGVKCAVLVGGVDMVQQSIALG 129

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   +++ TPGR++DH +  K      ++ LV+DEADR+L+  F   +  I  ++P  R+
Sbjct: 130 KRPHIVVATPGRLVDHLSNTKGFSLRTLKYLVLDEADRLLNEDFEKSLDEILKVIPRERR 189

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L+NP +IE  +  ST +T+           +K        +
Sbjct: 190 TFLFSATMTKKVKKLQRACLRNPVKIEAASKYSTVDTL---KQEYRFIPAKYKDCYLVYI 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++ +    ++F         L   L   G     I+G++ Q  R+  L+ FK G   ++
Sbjct: 247 LTEKSGSTSMVFTRTCDATTFLALVLRNLGLRAIPINGHMTQSKRLGALNKFKAGECNIL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR G A +LV + +++    
Sbjct: 307 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYEVEWFIQ 366

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IEKLI KK+         +   LE I       A++ +    K++G  R++K  +  +  
Sbjct: 367 IEKLIGKKLPEYPAREEEVLLLLEPI-----TEAKRISQTSIKNSGDARKRKGENEDEED 421

Query: 420 IPLK----ESEKISKLQQ 433
              K     ++K  K  +
Sbjct: 422 ELEKYLGVRNKKSKKFMR 439


>gi|217077055|ref|YP_002334771.1| ATP-dependent RNA helicase [Thermosipho africanus TCF52B]
 gi|217036908|gb|ACJ75430.1| ATP-dependent RNA helicase [Thermosipho africanus TCF52B]
          Length = 516

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 116/371 (31%), Positives = 193/371 (52%), Gaps = 9/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPM 59
           M+F D  LS K + A+ + G+  PTP+Q K IP +L++  ++   A+TGTGKTA+F +P+
Sbjct: 1   MNFEDFNLSEKTLRAINEKGFENPTPVQEKVIPTLLKKEKNLIVQAKTGTGKTAAFGIPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + +LE            I+       A          K   L +  + GG   + Q   L
Sbjct: 61  IELLENKGY-----VQAIILTPTRELALQVSEEINSLKRKKLKILPIYGGQSIQRQIDHL 115

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+++ TPGRILDH  RG + ++ ++  ++DEAD MLDMGFI  ++ I       + 
Sbjct: 116 RKGVDIVVGTPGRILDHLERGTIDLSKVDYFILDEADEMLDMGFIDDVEKILKSTSDDKF 175

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+   +  +++ +++N + I++     T    E                    +
Sbjct: 176 FLMFSATIPKRIIDLAKKYIKNYEVIKIQDKQLTTNLTEQ---IYIELRESDKFEALCRI 232

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +    G++FC  K  V  +   L ++G+   A+HG+  Q  R ++L  F+E  + ++
Sbjct: 233 IDMEEEFYGMVFCRTKVEVDTVSSKLIERGYDAEALHGDFSQYQRERVLKKFREKKVNIL 292

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV N+ +P   E+Y+HRIGRTGRAG+ G A T V   + + +  
Sbjct: 293 VATDVAARGIDITGLTHVINYSIPLNPEHYVHRIGRTGRAGKEGIAITFVTPREYRQLFR 352

Query: 360 IEKLIEKKVDW 370
           I+K    K+  
Sbjct: 353 IKKFSNAKIKE 363


>gi|209527740|ref|ZP_03276235.1| DEAD/DEAH box helicase domain protein [Arthrospira maxima CS-328]
 gi|209491818|gb|EDZ92178.1| DEAD/DEAH box helicase domain protein [Arthrospira maxima CS-328]
          Length = 465

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 140/368 (38%), Positives = 216/368 (58%), Gaps = 6/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+S +    +   G+ +PTP+Q++ IP +L   DV G+AQTGTGKTA+F LP+L 
Sbjct: 4   SFESLGISEQRARHLETLGFTEPTPVQVQAIPEMLSGRDVVGMAQTGTGKTAAFSLPILE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + L+L PTRELA QV +    +  +  L V  + GG   + Q ++L R
Sbjct: 64  QIDVH---AAGIQALVLTPTRELAMQVKEAIRNFSDDNALYVLTVYGGQSIDRQIQRLRR 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-VPFTRQT 180
           G  V++ TPGRILD  NRG+L ++ +  LV+DEAD ML MGFI  ++ I        RQT
Sbjct: 121 GVQVVVGTPGRILDLLNRGELKLDLLRWLVLDEADEMLSMGFIQDVEKILESADSEHRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM   + K+    L++P  ++V TP +T + IE         +SK      + + 
Sbjct: 181 AFFSATMDPSISKLVRRHLKSPVTVKVETPKATPKRIEQSVYMVPRGWSKAR--ALEPIL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  ++ IIF   K++  +L + L+  G SV   HGN++Q  R ++L   +   ++ +V
Sbjct: 239 ELEDPESAIIFVRTKQSAADLTNQLQAAGHSVDEYHGNLNQSQRERLLMRLRRRQVRWIV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P++ E+Y+HRIGRTGRAGR GKA TL+   D + +  I
Sbjct: 299 ATDIAARGLDVDHLTHVINYDLPDQVESYVHRIGRTGRAGREGKAITLIQSIDRRKLRNI 358

Query: 361 EKLIEKKV 368
           E+ + + +
Sbjct: 359 ERHLRQTL 366


>gi|146100408|ref|XP_001468856.1| ATP-dependent DEAD-box RNA helicase [Leishmania infantum]
 gi|134073225|emb|CAM71946.1| putative ATP-dependent DEAD-box RNA helicase [Leishmania infantum
           JPCM5]
          Length = 405

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 114/377 (30%), Positives = 194/377 (51%), Gaps = 8/377 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +  L  ++   + + G+ KP+P+Q + IP+ LQ  DV   A+ GTGKTASFV+P+L
Sbjct: 30  VNFEEYALRRELQMGIFEKGFEKPSPVQEEAIPVALQGKDVLARAKNGTGKTASFVIPVL 89

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKL 119
             ++    R    + L++ PTRELA Q A   ++ GK+     V +  GG        +L
Sbjct: 90  EKVDT---RESYVQALLMVPTRELALQTAQVTKELGKHIPGLEVMVTTGGTTLRDDILRL 146

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +L+ TPGR+LD  ++  + +++  ILV+DEAD++L   F+  I ++ + +P   Q
Sbjct: 147 TSKVHILVATPGRVLDLASKKAVDLSHCHILVLDEADKLLSQEFMEIIDDLYTYLPSQLQ 206

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           ++LFSAT    ++     F +               T++           ++       L
Sbjct: 207 SMLFSATFPVTVKT----FAERHLHNPYEINLMDELTLKGVTQYYAFVEERQKIHCLNTL 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++  +   IIFCN    V  L   + + G+S   IH  + Q+ R ++  +F+EG  + +
Sbjct: 263 FNKLQINQSIIFCNSVNRVELLAKKITQLGYSCYYIHARMQQQHRNRVFHDFREGHCRNL 322

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A   V  +D  ++  
Sbjct: 323 VCSDLITRGIDIQAVNVVINFDFPKYSETYLHRIGRSGRFGHLGVAINFVTYDDRYNVYR 382

Query: 360 IEKLIEKKVDWLNGDLS 376
           IE+ ++ ++  +  ++ 
Sbjct: 383 IEQELDTEIKPIPAEID 399


>gi|73540622|ref|YP_295142.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72118035|gb|AAZ60298.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 632

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 145/386 (37%), Positives = 220/386 (56%), Gaps = 21/386 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           FA LGL   ++ A+ +  Y  PTP+Q + IP  L   D+   +QTG+GKTA+F+LP    
Sbjct: 53  FATLGLDAAILRALSELNYNNPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQR 112

Query: 60  ---------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTV 103
                              ++ R     P  L+L PTRELA QV +   KYG+N   +  
Sbjct: 113 ISEKPATNRPTEPAKRMKGKRPRPSPAQPSLLVLTPTRELALQVTEAAAKYGRNLRRIVC 172

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163
           A ++GG+P+  Q   L +  D+L+ TPGR+LDH + G++ ++ +++LV DEADRMLDMGF
Sbjct: 173 ASILGGMPYPKQLAALSKMPDILVATPGRLLDHISAGRIDLSALDMLVFDEADRMLDMGF 232

Query: 164 IPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
              I  I    P +RQTL+FSAT+   + +++   L++P+RIE+    +    IE     
Sbjct: 233 ADDIDAIVDATPASRQTLMFSATLDARIAQLASRQLKDPQRIEIAAARADQSHIEQRLHF 292

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
           T     K+       L    T+K  I+F   K++  +L   L   GF+  A+HG++ Q +
Sbjct: 293 TDDMSHKERL--LDHLLRDATLKQAIVFTATKRDADSLAERLSDTGFAAGALHGDMTQGA 350

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L+  + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR G
Sbjct: 351 RNRTLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSG 410

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVD 369
            A  LV   D      IE+    ++D
Sbjct: 411 VAINLVNHNDTFQWKRIERFTNNRID 436


>gi|45361303|ref|NP_989229.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus (Silurana)
           tropicalis]
 gi|38969901|gb|AAH63223.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus (Silurana)
           tropicalis]
 gi|89271852|emb|CAJ81861.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus (Silurana)
           tropicalis]
          Length = 609

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 136/411 (33%), Positives = 215/411 (52%), Gaps = 3/411 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F +      ++  V    +  PTPIQ +  P+ L   D+ G+A TG+GKT S++LP  
Sbjct: 92  LQFHEASFPANLMEVVKRQNFTDPTPIQGQGWPVALSGLDMVGVAMTGSGKTLSYLLPGI 151

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +    +    R   P  L+L PTRELA QV     +YG+   L    + GG P   Q + 
Sbjct: 152 VHINHQPFLQRGDGPILLVLAPTRELAQQVQQVAAEYGRACRLRSTCIYGGAPKGPQIRD 211

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +N    LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 212 LERGVEICIATPGRLIDFLEAGKTNLNRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 271

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 272 QTLMWSATWPKEVRQLAEDFLRDYVHINIGALELSANHNILQIVDVCNDGEKDEKLVRLM 331

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+   +L   L + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 332 EEIMSEKENKTIVFVETKRRCDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFKHGKSP 391

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 392 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSSKTGTAYTFFTPGNIKQV 451

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           + +  ++ +    +N  L  L     +       + R++     K  G+DR
Sbjct: 452 NDLISVLREANQAINPKLLQLVEDRGRFRGRGGMNDRRDRFSSGKRGGWDR 502


>gi|293610799|ref|ZP_06693099.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827143|gb|EFF85508.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 639

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 136/389 (34%), Positives = 216/389 (55%), Gaps = 11/389 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP L 
Sbjct: 27  TFAEFSLHETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLH 86

Query: 62  I---------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                      ++    V  P  L+L PTRELA QV+ +   + ++        I G   
Sbjct: 87  NLAGQETFVPFKERMKAVTQPNILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 146

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             +  +  +GA V++ TPGR+LD  NR +L ++ +E L++DEADRMLD+GF   ++ I+ 
Sbjct: 147 FGKQIQQLKGAQVIVATPGRLLDLVNRRQLKLDKVEALIVDEADRMLDLGFSEDLEAISD 206

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L    RQTL+FSAT  D + +++E  +  P+RI + T  ST   I      T     K  
Sbjct: 207 LAGNRRQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHK-- 264

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L     + +T+   ++F + +++   L   L + G SV A+HG + Q  R + L + +
Sbjct: 265 KKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIR 324

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL    
Sbjct: 325 EGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYR 384

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           +   I A+E  ++ ++     +    +PP
Sbjct: 385 ERGKIRALEDYLDARLSVSEIEGLEPSPP 413


>gi|254578784|ref|XP_002495378.1| ZYRO0B09856p [Zygosaccharomyces rouxii]
 gi|238938268|emb|CAR26445.1| ZYRO0B09856p [Zygosaccharomyces rouxii]
          Length = 540

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 125/381 (32%), Positives = 208/381 (54%), Gaps = 3/381 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+  PT IQ +  P+ L   D+ G+A TG+GKT S+ LP + 
Sbjct: 111 SFDEAGFPDYVLKEVKAEGFAAPTGIQCQGWPMALSGRDMVGVAATGSGKTLSYCLPAIV 170

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+G++  +    + GG+P   Q + L
Sbjct: 171 HINAQPLLAPGDGPVVLVLAPTRELAVQIQKECSKFGRSSRIRNTCVYGGVPRGQQIRDL 230

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA+++I TPGR++D     K  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 231 ARGAEIVIATPGRLIDMLEINKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 290

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+++++ ++L +P ++++ +   +A       V   +++ K+  L + L 
Sbjct: 291 TLMWSATWPKEVKQLARDYLTDPIQVQIGSLELSASHTIKQVVEVISEFEKRDRLSKHLE 350

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            + +   + ++     K   +       + G+S  AIHG+ DQR R  +L  FK G   +
Sbjct: 351 IASEDQDSKVLVFASTKRTCDDITQYLRQDGWSALAIHGDKDQRERDWVLEEFKNGRSPI 410

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARG+D+  + +V N+D+P   E+Y+HRIGRTGRAG  G A +   + +     
Sbjct: 411 MVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGAKGTAISFFTEGNKGLGA 470

Query: 359 AIEKLIEKKVDWLNGDLSSLN 379
           ++  ++ +    +  DL+  +
Sbjct: 471 SLISIMREAKQEIPADLAQYD 491


>gi|73965241|ref|XP_861914.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 15 [Canis
           familiaris]
          Length = 620

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 221/447 (49%), Gaps = 12/447 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +Y +   L    + GG P   Q + 
Sbjct: 154 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 213

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV---- 174
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +    
Sbjct: 214 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRVST 273

Query: 175 --PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                RQTL++SAT   E+++++E+FL++   I +     +A       V       K  
Sbjct: 274 PKNPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDE 333

Query: 233 ALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
            L++ + +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ F
Sbjct: 334 KLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEF 393

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T    
Sbjct: 394 KHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTP 453

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDR 408
            +IK +  +  ++ +    +N  L  L                  R++     K  GF+ 
Sbjct: 454 NNIKQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNT 513

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDI 435
            +   +  + +  L + +  +K Q  +
Sbjct: 514 FRDRENYDRGYSSLLKRDFGAKTQNGV 540


>gi|225011737|ref|ZP_03702175.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-2A]
 gi|225004240|gb|EEG42212.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-2A]
          Length = 553

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 134/374 (35%), Positives = 216/374 (57%), Gaps = 8/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F  LGL+ +++ AV   G+  PT +Q K IP++L Q  D+  +AQTGTGKTA+F  PML
Sbjct: 3   TFKSLGLNTELLKAVEKLGFETPTEVQDKVIPILLEQNTDLVALAQTGTGKTAAFGFPML 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             ++    + R  + LIL PTREL  Q+ +    YG+       + I G    + Q  K+
Sbjct: 63  QRIDA---KQRTTQGLILAPTRELCLQITNEMGIYGQALKNINIVAIYGGANIQEQANKI 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR+ D   R  + ++ I+  V+DEAD ML+MGF   I++I +  P ++ 
Sbjct: 120 RRGAQIVVATPGRLKDMIGRRLVDISAIQYCVLDEADEMLNMGFYEDIKDILTHTPKSKN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           + LFSATM  E+  +++ F++ P  I V T +S+A+ I+H     +   +++     + +
Sbjct: 180 SWLFSATMPPEVNTIAKKFMKKPIEITVGTKNSSAKNIDH---QYFIVAARERYNALRAV 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S +T   G++FC  K     +   L + G+   AIHG++ Q  R  ++ +F++  IQL+
Sbjct: 237 VSMNTDLFGVVFCRTKIETQKVAEKLIQDGYKAAAIHGDLSQNQRDIVMQSFRKKRIQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+ D+ HV N+ +P+  E Y HR GRTGRAG+ G +   V K D + I  
Sbjct: 297 IATDVAARGIDVDDLTHVINYQLPDEIETYTHRSGRTGRAGKLGTSIIFVTKSDRRKIKL 356

Query: 360 IEKLIEKKVDWLNG 373
           IE  ++ K+  L  
Sbjct: 357 IENKLQTKLTELEM 370


>gi|224141279|ref|XP_002324002.1| predicted protein [Populus trichocarpa]
 gi|222867004|gb|EEF04135.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 133/378 (35%), Positives = 209/378 (55%), Gaps = 2/378 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   G   +++  VL AG+  PTPIQ ++ P+ LQ  D+  +A+TG+GKT  +++P   
Sbjct: 155 SFEATGFPSEILKEVLKAGFSSPTPIQAQSWPVALQSRDIVAVAKTGSGKTLGYLIPGFI 214

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L++ R   +  P  L+L PTRELA Q+ D   K+GK+  ++   L GG P   Q K+L+
Sbjct: 215 HLKRCRNDPQLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKELD 274

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGAD+++ TPGR+ D     ++ +N ++ LV+DEADRMLDMGF P I+ I   VP  RQT
Sbjct: 275 RGADIVVATPGRLNDILEMRRVSLNQVKYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 334

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+++AT   E++K++ + L NP ++ +                      +K     + + 
Sbjct: 335 LMYTATWPKEVRKIAADLLVNPVQVNIGNIDELVANKSITQHVELLAPLEK-HRRLEQIL 393

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + II     K + +       + F   AIHG+  Q  R  +LS F+ G   ++V
Sbjct: 394 RSQEPGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDHVLSQFRTGRSPILV 453

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G A+T    +D K+   +
Sbjct: 454 ATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDAKYASDL 513

Query: 361 EKLIEKKVDWLNGDLSSL 378
            K++E     +  ++ ++
Sbjct: 514 IKVLEGANQLVPPEIRAM 531


>gi|307206923|gb|EFN84769.1| Putative ATP-dependent RNA helicase me31b [Harpegnathos saltator]
          Length = 435

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 110/375 (29%), Positives = 191/375 (50%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L  +++  + + G+ KP+PIQ  +IP+ L   D+   A+ GTGKT ++ +P+L 
Sbjct: 56  EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSSKDILARAKNGTGKTGAYSIPVLE 115

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +  + + L++ PTRELA Q +    +  K+ ++ V +  GG        ++ +
Sbjct: 116 QVDP---KKDVIQALVIVPTRELALQTSQICIELAKHMDIKVMVTTGGTNLRDDIMRIYQ 172

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGRILD  ++    M + +ILV+DEAD++L   F   + ++ S +P  RQ L
Sbjct: 173 KVQVIIATPGRILDLMDKNVANMEHCKILVLDEADKLLSQDFKGMLDHVISRLPHERQIL 232

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    +++    F++   R           T++           ++       L S
Sbjct: 233 LYSATFPLTVKQ----FMEKHLRDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFS 288

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   +   G+    IH  + Q  R ++  +F+ G  + +V+
Sbjct: 289 KLQITQSIIFCNSTQRVELLAKKITDLGYCCYYIHAKMAQAHRNRVFHDFRAGLCRNLVS 348

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  IE
Sbjct: 349 SDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRFNLHRIE 408

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 409 QELGTEIKPIPKVID 423


>gi|294789414|ref|ZP_06754651.1| 3-hydroxyisobutyrate dehydrogenase family protein [Simonsiella
           muelleri ATCC 29453]
 gi|294482627|gb|EFG30317.1| 3-hydroxyisobutyrate dehydrogenase family protein [Simonsiella
           muelleri ATCC 29453]
          Length = 471

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 154/426 (36%), Positives = 243/426 (57%), Gaps = 14/426 (3%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M  F+ LGL  ++  A+ + GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP 
Sbjct: 23  MSQFSQLGLGQEITSALAEQGYETPTPIQATAIPKALAGHDLLAAAQTGTGKTAAFMLPS 82

Query: 60  LTILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           L  L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+  + 
Sbjct: 83  LERLKRYANASTSPAMHPVRMLVLTPTRELADQIDQNTQNYIKNLPLRHTVLFGGVNMDK 142

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++
Sbjct: 143 QTTDLRTGCEIVVATVGRLLDHIKQKNINLNKVEIVVLDEADRMLDMGFIDDIRQIMQML 202

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQTLLFSAT    ++K++++F+ +P+ +EV   ++T   +E   +A  A   ++   
Sbjct: 203 PRPRQTLLFSATFAPAIRKLAQDFMNSPETVEVAAQNATNANVEQHVIAVDAYRKREL-- 260

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             + L     M   I+FC  K++   +   L ++G S  AIHG+  Q++R+ +LS FK G
Sbjct: 261 -LERLIVDLQMPQVIVFCKTKQSADQVARDLVRRGLSANAIHGDKSQQTRLDVLSQFKSG 319

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            ++++VA+D+AARGLDI ++  V N+++P +AE+Y+HRIGRTGRAG  G A +++   + 
Sbjct: 320 ELRVLVATDVAARGLDIAELPFVINYELPTQAEDYVHRIGRTGRAGADGVAISMMDDNEQ 379

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           K   +I +LI +++      +    P  E  D       +    I   S   +R ++ ++
Sbjct: 380 KMYFSINELIGQELPI--SKIEGFEPRWEMGDEPTSGSLKSEKTI---SKTPNRVERKFA 434

Query: 415 SQKSHI 420
             K+  
Sbjct: 435 KTKAEA 440


>gi|46116372|ref|XP_384204.1| hypothetical protein FG04028.1 [Gibberella zeae PH-1]
 gi|91207782|sp|Q4IFI0|RRP3_GIBZE RecName: Full=ATP-dependent rRNA helicase RRP3
          Length = 486

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 137/411 (33%), Positives = 218/411 (53%), Gaps = 11/411 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++  +  A     Y  PTPIQ K+IP+ LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 61  TFKDLGVNDALCEACEKLNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQ 120

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    L+L PTRELA Q+   FE  G   +L  A+++GG+    Q   L +
Sbjct: 121 AL---LDKPQPLFGLVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALGK 177

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR++DH        +  ++ L++DEADR+LDM F P I  I   VP  R+T
Sbjct: 178 KPHIVVATPGRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFVPRERRT 237

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT++ +++ +    L++P ++ +++      +             K        L 
Sbjct: 238 YLFSATISSKIESLQRASLRDPVKVSISSNKYQTVSTLLQNYLFIPHPQKDV--HLIYLI 295

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ I+F         +   L   GF    +HG + Q SR+  L+ F+ GT  ++V
Sbjct: 296 NEHAGQSTIVFTRTVWETQRVSILLRTLGFGAIPLHGQLSQSSRLGALNKFRSGTRDILV 355

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V N+D+P  ++ YIHR+GRT RAG+ G A +LV + D++    I
Sbjct: 356 ATDVAARGLDIPSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGVAISLVTQYDLEIYLRI 415

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           E  + KK+     +   +     +++ AQ     +   I  KS   +R KK
Sbjct: 416 EAALGKKLAEYPTEKEEVMAFQSRVEEAQ-----RIARIEMKSFTEERGKK 461


>gi|117645818|emb|CAL38376.1| hypothetical protein [synthetic construct]
 gi|208967747|dbj|BAG72519.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [synthetic construct]
          Length = 648

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 144/412 (34%), Positives = 221/412 (53%), Gaps = 11/412 (2%)

Query: 2   DFAD-LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F D     P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT  +++P  
Sbjct: 242 TFDDAFQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGF 301

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                    + +   P  L+L PTRELA QV     KY     L    + GG   + Q +
Sbjct: 302 IHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNGDEQIE 360

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L++G D++I TPGR+ D      + + NI  LV+DEAD+MLDMGF P I  I   V   
Sbjct: 361 ELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPD 420

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++ SAT    + ++++++L+ P  + V T    A +     +    +  K   + Q 
Sbjct: 421 RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHM-QT 479

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            LQS  +    I+F ++K    +L   L     SV ++HG+ +QR R K L NFK G ++
Sbjct: 480 FLQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVR 539

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+DLA+RGLD+ DV HV+NFD P   E Y+HRIGRTGRAGR G + T + + D +  
Sbjct: 540 ILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVA 599

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             +  ++E+    +  +L S+    E      H   R+     ++  G  ++
Sbjct: 600 SELINILERANQSIPEELVSMAERFE-----AHQRKREMERKMERPQGRPKK 646


>gi|50293017|ref|XP_448941.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661092|sp|Q6FLF3|DBP2_CANGA RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49528254|emb|CAG61911.1| unnamed protein product [Candida glabrata]
          Length = 544

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 128/377 (33%), Positives = 210/377 (55%), Gaps = 3/377 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ KPT IQ +  P+ L   D+ GIA TG+GKT S+ LP + 
Sbjct: 111 TFDEAGFPDYVLKEVKAEGFDKPTSIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIV 170

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      +    P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q ++L
Sbjct: 171 HINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGKSSRIRNTCVYGGVPRGQQIREL 230

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA+++I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 231 IRGAEIVIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 290

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+Q+++ ++L +P ++++ +    A       V   +++ K+  L++ L 
Sbjct: 291 TLMWSATWPKEVQQLARDYLNDPIQVQIGSLELAASHNITQLVEVVSEFEKRDRLVKHLD 350

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +    ++ I+     K   +   S   + G+   AIHG+ DQR R  +L+ F+ G   +
Sbjct: 351 TASQDKESKILIFASTKRTCDEITSYLRQDGWPALAIHGDKDQRERDWVLNEFRTGNSPI 410

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARG+D+  +  V N+D+P   E+Y+HRIGRTGRAG  G A +   +++     
Sbjct: 411 MVATDVAARGIDVKGINFVVNYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEDNKSLGA 470

Query: 359 AIEKLIEKKVDWLNGDL 375
           ++  ++ +    +  +L
Sbjct: 471 SLISIMREAKQNIPEEL 487


>gi|296450396|ref|ZP_06892152.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP08]
 gi|296879481|ref|ZP_06903475.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP07]
 gi|296260657|gb|EFH07496.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP08]
 gi|296429627|gb|EFH15480.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP07]
          Length = 497

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 131/431 (30%), Positives = 229/431 (53%), Gaps = 11/431 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L+ K++ ++    Y  P+ +QI+ IP +L   ++   ++TG+GKTASF +P+  
Sbjct: 4   TFEKFKLNEKILKSLKSLEYNIPSRVQIEVIPKLLNGQNLVVKSKTGSGKTASFAIPLCE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +      ++    LI+ PTRELA QV D     G+   +  + + G  P + Q  +L++
Sbjct: 64  NINVEYNNIQA---LIVVPTRELALQVKDEISSIGRLRKVRCSAIFGKQPIKEQIAELKQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI+DH N+G + + +I+ L+IDEAD+M + GF+  ++ I   +P  +   
Sbjct: 121 RVHIVVATPGRIIDHINKGTIKLEDIKYLIIDEADKMFNKGFVEQMEKILLNLPKEKIVG 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+ +E++ + E ++ +   I +      T +              ++  +L + L 
Sbjct: 181 LFSATIDEEIKYICEKYIPDYSVINIEENKSDTNQRTRQIDDKIIKTNEREKYILLKELI 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  K+ IIFCN K+ V  L + + K+GF +  +H ++ Q  R+ ++ +FK+    ++V
Sbjct: 241 YSENPKSVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKKQKFNVLV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +SD+A+RG+ I D+  V N+DVP   ENYIHRIGRTGR    GKA T+V ++D K+I+ I
Sbjct: 301 SSDVASRGIHIDDISLVINYDVPQDKENYIHRIGRTGRKRNSGKAITIVTEKDEKYIENI 360

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  I  K++ L  D+        KI   +++          K     ++    S +   I
Sbjct: 361 ETYIGYKINELK-DIEKSRITHGKILFEEYSKE------ILKEVSKRKKADKNSYKGKDI 413

Query: 421 PLKESEKISKL 431
            L    ++ KL
Sbjct: 414 KLNTESEVVKL 424


>gi|222352149|ref|NP_061135.2| probable ATP-dependent RNA helicase DDX43 [Homo sapiens]
 gi|145559466|sp|Q9NXZ2|DDX43_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX43; AltName:
           Full=Cancer/testis antigen 13; Short=CT13; AltName:
           Full=DEAD box protein 43; AltName: Full=DEAD box protein
           HAGE; AltName: Full=Helical antigen
          Length = 648

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 143/412 (34%), Positives = 220/412 (53%), Gaps = 11/412 (2%)

Query: 2   DFAD-LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F D     P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT  +++P  
Sbjct: 242 TFDDAFQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGF 301

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                    + +   P  L+L PTRELA QV     KY     L    + GG   + Q +
Sbjct: 302 IHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIE 360

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L++G D++I TPGR+ D      + + NI  LV+DEAD+MLDMGF P I  I   V   
Sbjct: 361 ELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPD 420

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++ SAT    + ++++++L+ P  + V T    A +     +    +  K   + Q 
Sbjct: 421 RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHM-QT 479

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            LQS  +    I+F ++K    +L   L     SV ++HG+ +QR R K L NFK G ++
Sbjct: 480 FLQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVR 539

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+DLA+RGLD+ DV HV+NFD P   E Y+HRIGRTGRAGR G + T + + D +  
Sbjct: 540 ILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVA 599

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             +  ++E+    +  +L S+           H   R+     ++  G  ++
Sbjct: 600 SELINILERANQSIPEELVSMAE-----RFKAHQQKREMERKMERPQGRPKK 646


>gi|152995724|ref|YP_001340559.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150836648|gb|ABR70624.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 448

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 128/416 (30%), Positives = 209/416 (50%), Gaps = 10/416 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F + G   +++ ++   G+ + T IQ + IP  +   D+   ++TG+GKT +++LP +
Sbjct: 1   MLFEEFGFDNRILKSIGHLGFDEATEIQARAIPEAMAGRDLLASSKTGSGKTLAYLLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K     R PR +IL PTRELA QV             T  L+ GG  F  Q+K L
Sbjct: 61  HRVYKKKALSKRDPRVVILVPTRELAKQVFGQLRLLLAASRFTSILIQGGENFNDQHKSL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++    ++ TPGR++DH  +  + +  +E+LV+DEADRMLD+GF   ++ I S     ++
Sbjct: 121 QKDPHFIVATPGRLVDHLKQRHVFLEGLELLVLDEADRMLDLGFADAMRAINSAASHRQR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LF +   D  +          +   V       E  +         +      L + L
Sbjct: 181 QTLFFSATLDNTEISEIAGELLREPSRVAIGQGFDEHTDISQHVLLCDHLDHKEALLKHL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+K  I+F   K + V L   +   G S  A++GN+ Q +R K + +F +G   ++
Sbjct: 241 LVGQTIKQAIVFTATKSDTVRLSEIIAGWGLSTQALNGNLSQSARNKTMESFAKGQFDVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++D+A+RGLDI  V HVFNFD+P +AE ++HR GRTGRAG  G A++LV  +D  +  A
Sbjct: 301 VSTDVASRGLDIASVSHVFNFDLPKQAEEFVHRTGRTGRAGFKGDAYSLVGPKDWVNFKA 360

Query: 360 IEKLIEKK-----VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           IE  ++K      ++ L      L PP      A+    + +   P K++    +K
Sbjct: 361 IEVFLQKTFTTESIEGLEAKFKGLLPP----KPARQETKKGSTKAPTKASKKTNKK 412


>gi|124088187|ref|XP_001346998.1| RNA helicase [Paramecium tetraurelia strain d4-2]
 gi|145474579|ref|XP_001423312.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|50057387|emb|CAH03371.1| RNA helicase, putative [Paramecium tetraurelia]
 gi|124390372|emb|CAK55914.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1157

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 134/449 (29%), Positives = 216/449 (48%), Gaps = 11/449 (2%)

Query: 2   DFADLGLSPKVVCA-VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++   GL+ +V+   +    ++ P PIQ + +P ++   D  GIA+TG+GKT +++LP+L
Sbjct: 504 NWYQCGLNDRVLNVLIEKKKFINPFPIQAQAVPCIMSGRDFIGIAETGSGKTLAYLLPLL 563

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                +        P  +I+ PTRELA Q+  N   +    NL V   +GG     Q   
Sbjct: 564 RHVLDQPALKDGDGPIAIIMAPTRELAHQIYVNCRWFTSILNLNVVCCVGGAGIAGQLSD 623

Query: 119 LERGADVLICTPGRILD---HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           L+RG ++++CTPGR++D     N     +  +  +VIDEADRM D+GF P I  I   + 
Sbjct: 624 LKRGTEIVVCTPGRMIDVLTTSNGKITNLRRVTYVVIDEADRMFDLGFEPQICKIIQNIR 683

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ ++FSAT    ++++++  L+ P    V              +  +   S K   L
Sbjct: 684 PDRQLVMFSATFPKNVEQLAKRVLRKPIECIVGGRGQ--AGGNIEQIIEFMDESDKLYKL 741

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L Q   T  + +IF  ++    +L   L K G+    +HG +D + R   + +FK+G 
Sbjct: 742 LLLFQEWYTKGSILIFVEKQTEADDLFKELLKYGYKSFVLHGGMDPQDREFTIHDFKKGI 801

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +MVA+ + ARGLDI  +  V NF  PN  E+YIHRIGRTGRAG+ G A T    +D  
Sbjct: 802 RTIMVATSVLARGLDIKHICLVINFSCPNHMEDYIHRIGRTGRAGQKGTAITFFTPQDEH 861

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPP-LEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
             + +  L+EK    L   L       +EK+   +    R  N      T     ++ + 
Sbjct: 862 LANDLVYLLEKSEQQLPEKLKEYQKSFMEKVKAGEAKIYRNKNRAGGGFTFGPEEEQKF- 920

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSL 443
            Q     +++   +  L  D Q +D + +
Sbjct: 921 -QDFRAQMRKKFGLEGLMMDEQSSDDEKV 948


>gi|45219880|gb|AAH66938.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Homo sapiens]
          Length = 648

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 143/412 (34%), Positives = 220/412 (53%), Gaps = 11/412 (2%)

Query: 2   DFAD-LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F D     P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT  +++P  
Sbjct: 242 TFDDAFQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGF 301

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                    + +   P  L+L PTRELA QV     KY     L    + GG   + Q +
Sbjct: 302 IHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIE 360

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L++G D++I TPGR+ D      + + NI  LV+DEAD+MLDMGF P I  I   V   
Sbjct: 361 ELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPD 420

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++ SAT    + ++++++L+ P  + V T    A +     +    +  K   + Q 
Sbjct: 421 RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHM-QT 479

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            LQS  +    I+F ++K    +L   L     SV ++HG+ +QR R K L NFK G ++
Sbjct: 480 FLQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVR 539

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+DLA+RGLD+ DV HV+NFD P   E Y+HRIGRTGRAGR G + T + + D +  
Sbjct: 540 ILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVA 599

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             +  ++E+    +  +L S+           H   R+     ++  G  ++
Sbjct: 600 SELINILERANQSIPEELVSMAE-----RFKAHQQKREMERKMERPQGRPKK 646


>gi|332025289|gb|EGI65460.1| Putative ATP-dependent RNA helicase DDX17 [Acromyrmex echinatior]
          Length = 706

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 130/379 (34%), Positives = 202/379 (53%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +      V+  +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP    
Sbjct: 109 FEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPATVH 168

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  LIL PTRELA Q+      +G +  +    + GG P   Q + LE
Sbjct: 169 INHQPRLSRGDGPIVLILAPTRELAQQIQTVARDFGSSSCIRNTCIFGGSPKGPQARDLE 228

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 229 RGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 288

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCALLQQLL 239
           L++SAT   E+Q ++E+FL +  +I + + +  A       V    ++ K          
Sbjct: 289 LMWSATWPKEVQALAEDFLSDYIQINIGSLTLAANHNIRQIVEICQEHEKEMKLSQLLRE 348

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   KK V ++  +++++G+S  +IHG+  Q  R  +LS F+ G   ++
Sbjct: 349 IGTERGSKMIIFVETKKKVDDITKTIKREGWSAISIHGDKSQPERDYVLSEFRNGKTMIL 408

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV +V NFD PN +E+YIHRIGRTGR    G A+      + +    
Sbjct: 409 VATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNNARQAKE 468

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +  ++E+    +N  L+ +
Sbjct: 469 LIAVLEEAGQAINPQLADM 487


>gi|195439780|ref|XP_002067737.1| GK12550 [Drosophila willistoni]
 gi|194163822|gb|EDW78723.1| GK12550 [Drosophila willistoni]
          Length = 800

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 211/379 (55%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + G    V+  V   G+ KPT IQ +  P+ L   D+ G+AQTG+GKT +++LP +  
Sbjct: 136 FEEGGFPDYVMNEVRKQGFAKPTAIQAQGWPIALSGRDLVGVAQTGSGKTLAYILPAVVH 195

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA Q+     ++G N  +    + GG P   Q + LE
Sbjct: 196 INNQPRLERGDGPIALVLAPTRELAQQIQQVASEFGSNTQVRNTCIFGGAPKGQQARDLE 255

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 256 RGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQV 315

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLL 239
           L++SAT   E+++++E FL N  ++ + + S +A       V    +  K    +     
Sbjct: 316 LMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNIRQIVDVCDESEKIVKLINLLTD 375

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S ++    IIF   KK V  +  ++ +QG+  CAIHG+  Q+ R  +LS+F+ G   ++
Sbjct: 376 ISAESETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSIL 435

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV  V N+D P+ +E+Y+HRIGRTGR+   G A+TL    +    + 
Sbjct: 436 VATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKAND 495

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + +++ +    +N  L ++
Sbjct: 496 LIQVLREANQTINPKLMNM 514


>gi|330446057|ref|ZP_08309709.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490248|dbj|GAA04206.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 426

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 155/393 (39%), Positives = 221/393 (56%), Gaps = 19/393 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L P ++ A+++ GY  PT +Q + IPL L+  DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFESLNLHPNLLKALVELGYSSPTDVQKQAIPLALKGEDVMAGAQTGTGKTAAFSLPLL 60

Query: 61  TILEKGRARV--------------RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
             L    ++                  R LIL PTRELA QV D+   Y K  +L VA+ 
Sbjct: 61  QRLLTLPSQSEQSAESSTDSKASGHPIRALILTPTRELAQQVFDSMSAYAKYTDLKVAVA 120

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q K +  GAD+L+ TPGR+LDH     + +  IE  V+DEADRMLDMGFI  
Sbjct: 121 YGGTSMNVQVKAINAGADILVATPGRLLDHVFNRSVSLTEIETFVLDEADRMLDMGFIVD 180

Query: 167 IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
           IQ I   +P  RQTL FSAT + +++K++ + L  PK +EV   ++ AET+E        
Sbjct: 181 IQRIMKRMPDERQTLFFSATFSKQVKKLAFDILTEPKMVEVTPANTAAETVEQMVYPVDK 240

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
               +       L      +  ++F   K+    L   L   G    +I+G+  Q +R +
Sbjct: 241 HRKAEL---LAYLIGSRNWQQVLVFTKTKQGSDKLAKDLGLDGIKAVSINGDKSQGARQR 297

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  FK G ++++VA+D+AARGLDI  +G+V NFD+P +AE+Y+HRIGRTGRAG  G A 
Sbjct: 298 ALDEFKSGKVRVLVATDVAARGLDIEQLGYVVNFDMPYKAEDYVHRIGRTGRAGMTGHAI 357

Query: 347 TLVAKEDIKHIDAIEKLIEKKV--DWLNGDLSS 377
           TL++ ++   + AIE+L++ ++   WL G    
Sbjct: 358 TLMSLDEEWALKAIEELLDTRIPQQWLEGYEPD 390


>gi|315604272|ref|ZP_07879338.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313978|gb|EFU62029.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 699

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 145/378 (38%), Positives = 215/378 (56%), Gaps = 10/378 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LGL  +++ A+ D G+  PTPIQ   IP +L+  DV GIAQTGTGKTA+F LP+L
Sbjct: 37  VTFASLGLPDEILAAITDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLL 96

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
            I++     V+    L+L PTRELA Q A   E +         + +  G P+  Q   L
Sbjct: 97  AIVDADERDVQ---ALVLAPTRELAMQSAQAIEDFAARAARLDVVPVYGGSPYGPQIGAL 153

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA V++ TPGR++D   +G L ++N+ +LV+DEAD ML MGF   ++ I S VP  R 
Sbjct: 154 KRGAQVVVGTPGRVIDLIEKGALDLSNVRMLVLDEADEMLRMGFAEDVETIASAVPAQRL 213

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL---- 235
           T LFSATM   ++KV+   L++P ++ V+T SST +TI   +     ++           
Sbjct: 214 TALFSATMPAAIEKVAREHLKDPVKVAVSTESSTVDTIHQTYAVVPYKHKIGALCRVLAT 273

Query: 236 --QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
             Q + + Q+     I+F   + +V  +   L  +GF    I G++ Q  R +++   K 
Sbjct: 274 RAQHIARGQEEADAAIVFVRTRADVEEVSLELSARGFRAAGISGDVAQTERERMVERLKT 333

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G + ++VA+D+AARGLD+  +  V NFDVP   E Y+HRIGRTGRAGR G+A T     +
Sbjct: 334 GALDVLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTGRAGRQGRALTFFTPRE 393

Query: 354 IKHIDAIEKLIEKKVDWL 371
              +  IEKL    ++ +
Sbjct: 394 HGRLRRIEKLTGTDMEEV 411


>gi|291165171|gb|ADD81190.1| vasa [Scomber australasicus]
          Length = 645

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 137/447 (30%), Positives = 226/447 (50%), Gaps = 22/447 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 208 MTFDEAQLCESLRKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 267

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + ++ P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 268 QQLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGH 327

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
           Q + +ERG +++  TPGR+LD   RGK+ ++ +  LV+DEADRMLDMGF P ++      
Sbjct: 328 QIRDIERGCNIVCGTPGRLLDMIGRGKVGVSKLRYLVLDEADRMLDMGFEPDMRRLVGSP 387

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++Q+++ +FL+             A +          ++SK
Sbjct: 388 GMPSKENRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSK 447

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +       L     M+  ++F   K+    +   L ++     +IHG+ +QR R + L++
Sbjct: 448 RE--QLLDLLKTTGMERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALAD 505

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   +MVA+ +AARGLDIPDV HV NFD+PN  + Y+HRIGRTGR G  G+A +   
Sbjct: 506 FRSGKCPVMVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYD 565

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            + D +   ++  ++ K    +   L          + A       +   P+K+      
Sbjct: 566 PDGDSQLASSLVTVLSKAQQEVPSWLE---------ESAFSGSTSSSFKPPRKNFASTDS 616

Query: 410 KKNYSSQKSHIPLKESEKISKLQQDIQ 436
           +K  S Q + +  +E+ + +    D +
Sbjct: 617 RKGGSFQDNSMQSQEAVQPAANDDDEE 643


>gi|284053417|ref|ZP_06383627.1| DEAD/DEAH box helicase-like protein [Arthrospira platensis str.
           Paraca]
          Length = 465

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 134/368 (36%), Positives = 213/368 (57%), Gaps = 6/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+S +    +   G+ +PTP+QI+ IP +L   DV G+AQTGTGKTA+F LP+L 
Sbjct: 4   SFESLGISEQRARHLETLGFTEPTPVQIQAIPEMLSGRDVVGMAQTGTGKTAAFSLPILE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + L+L PTRELA QV +    +  +  L V  + GG   + Q ++L R
Sbjct: 64  QIDVH---AAGIQALVLTPTRELAMQVKEAIRTFSDDNALYVLTVYGGQSIDRQIQRLRR 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGRILD  NRG+L ++++  LV+DEAD ML MGFI  ++ I        +  
Sbjct: 121 GVQVVVGTPGRILDLLNRGELKLDSLRWLVLDEADEMLSMGFIQDVEKILESADSEHRQT 180

Query: 182 LFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            F +   D  + K+    L++P  ++V TP +T + IE         +SK      + + 
Sbjct: 181 AFFSATMDASISKLVRRHLKSPVTVKVETPKATPKRIEQSVYMVPRGWSKAR--ALEPIL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  ++ IIF   K++  +L + L+  G SV   HGN++Q  R ++L   +   ++ +V
Sbjct: 239 ELEDPESAIIFVRTKQSAADLTNQLQAAGHSVDEYHGNLNQSQRERLLMRLRRRQVRWIV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P++ ++Y+HRIGRTGRAGR GKA TL+   D + +  I
Sbjct: 299 ATDIAARGLDVDHLTHVINYDLPDQVDSYVHRIGRTGRAGREGKAITLIQPIDRRKLRNI 358

Query: 361 EKLIEKKV 368
           E+ + + +
Sbjct: 359 ERHLRQTL 366


>gi|311771467|dbj|BAJ25759.1| vasa [Pagrus major]
          Length = 631

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 201/388 (51%), Gaps = 13/388 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 196 MTFDEAGLCESLRKTVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 255

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + ++ P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 256 QQLMADGVAASSFSELQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGVSTGY 315

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
           Q ++L RG +VL  TPGR++D   RGK+ ++ +  LV+DEADRMLDMGF P ++      
Sbjct: 316 QIRELCRGCNVLCGTPGRLMDVIGRGKVGLSKLRYLVLDEADRMLDMGFEPAMRRLVGSP 375

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  D++Q++  +FL+             A            ++SK
Sbjct: 376 GMPSKENRQTLMFSATYPDDIQRMGADFLKTDYLFLAVGVVGAACNDVEQTFVQVTKFSK 435

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +       L      +  ++F   K+    +   L ++     +IHG+ +QR R   L++
Sbjct: 436 RE--QLLDLLKTTGTERTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQRERELALAD 493

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   +MVA+ +AARGLDIPDV HV NFD+P   + Y+HRIGRTGR G  G+A +   
Sbjct: 494 FRSGKCPVMVATSVAARGLDIPDVQHVVNFDLPKDIDEYVHRIGRTGRCGNTGRAVSFYD 553

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSS 377
            E D +    +  ++ K    +   L  
Sbjct: 554 PEADGQLARPLVTILSKAQQEVPSWLEE 581


>gi|332885949|gb|EGK06193.1| hypothetical protein HMPREF9456_00067 [Dysgonomonas mossii DSM
           22836]
          Length = 608

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 135/370 (36%), Positives = 218/370 (58%), Gaps = 8/370 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG++  +  A+ + GY  P P+Q + IP +L + +DV  +AQTGTGKTA+F LP+L
Sbjct: 3   TFEELGVAANIRKAIEEMGYENPMPVQEEVIPYLLGETNDVIALAQTGTGKTAAFGLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++    +  +P+ LIL PTREL  Q+A +   Y K  +    L + G    E+Q K L
Sbjct: 63  QKIDI---KQNVPQALILCPTRELCLQIAGDLSDYSKYIDNLRVLPVYGGSSIESQIKSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR++D  NR  + ++N++ +V+DE+D ML+MGF+  I  I S VP  R 
Sbjct: 120 KRGVQIIVATPGRLIDLINRRTVELSNVKYVVLDESDEMLNMGFMESIDEILSKVPDERL 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  E+ K+++ ++QNPK I +   +   E         Y  ++K   L  + +
Sbjct: 180 MLLFSATMPKEIAKITKKYMQNPKEITIGRKN---EGSNSVKHVYYLVHAKDKYLALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  ++    +   L + G++  ++HG++ Q  R  ++  F+   IQL+
Sbjct: 237 ADYYPNIYGIIFCRTRRETQEIADKLIQDGYNADSLHGDLSQAQRDYVMQKFRIKNIQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+ +P+  E+Y HR GRTGRAG+ G +  ++  ++   +  
Sbjct: 297 VATDVAARGLDVDSLTHVINYGLPDDIESYTHRSGRTGRAGKTGTSIAIIHVKEKGKVRE 356

Query: 360 IEKLIEKKVD 369
           IEK+I KK +
Sbjct: 357 IEKIINKKFE 366


>gi|316973226|gb|EFV56846.1| ATP-dependent rRNA helicase Rrp3 [Trichinella spiralis]
          Length = 496

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 130/407 (31%), Positives = 216/407 (53%), Gaps = 7/407 (1%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           G+ P +  A     +  PT +QI+ IPL LQ  DV G+A+TG+GKTA+F LP+L  L + 
Sbjct: 68  GVVPVLCEACKQLNWTDPTKVQIEAIPLALQGRDVIGLAETGSGKTAAFALPILQALLEH 127

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN-KKLERGADV 125
             R+     L+L PTRELA Q+A+ FE  G    + VA+++GG+    Q     ++   +
Sbjct: 128 PQRLFA---LVLTPTRELAYQIAEQFEALGACIGIKVAVIVGGVDMVTQALCLAKKPHVI 184

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           +      +    N     + +++ LV+DEADR+LDM F   +  I  ++P  R+T LFSA
Sbjct: 185 VATPGRLVDHLENTKGFSLRSLKYLVMDEADRILDMDFESEVNKILQVIPRERKTYLFSA 244

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           TMT ++ K+    LQ+P ++EV++   T + ++  ++       K        + ++   
Sbjct: 245 TMTKKVTKLQRASLQDPVKVEVSSKYQTVDKLQQHYIFIPQ---KFKDCYLVYILNEMAG 301

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
           K+ I+F +   N +     L   GF+   +HG + Q  R+  L+ FK     +++A+D+A
Sbjct: 302 KSCIVFTSTCANSLRTALLLRNLGFTAVPLHGQMSQAKRLGALNKFKAKDRSILIATDVA 361

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLDIP V  V NFD+P  +++YIHR+GRT RAGR G + T V + D++    IE L+ 
Sbjct: 362 SRGLDIPHVDLVINFDIPTHSKDYIHRVGRTARAGRAGISITFVTQYDVELYQRIEYLLG 421

Query: 366 KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           K++     +   +   LE++  A      +   +  K     +R + 
Sbjct: 422 KQLPLFKTEEPEVLSLLERVTEANRIAKMQVKELEDKKRTNKKRNRE 468


>gi|311743209|ref|ZP_07717016.1| DeaD protein [Aeromicrobium marinum DSM 15272]
 gi|311313277|gb|EFQ83187.1| DeaD protein [Aeromicrobium marinum DSM 15272]
          Length = 567

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 143/371 (38%), Positives = 218/371 (58%), Gaps = 7/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   +V  +   GY  PTPIQ + I  +L   DV G+AQTGTGKTA+F LP+L 
Sbjct: 7   SFADLGLGDALVAVLAGLGYETPTPIQAQAIGPLLDGRDVVGLAQTGTGKTAAFALPILE 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L+  RA  +    LIL PTRELA QV+D F  Y        +  + GG  + AQ + L+
Sbjct: 67  RLDPDRAETQA---LILAPTRELALQVSDAFATYAARTPGLRILPVYGGQGYAAQLRGLQ 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGF   ++ I +  P  +Q 
Sbjct: 124 RGAHVVVGTPGRVIDHLDRGSLELSGLDHLVLDEADEMLTMGFAEDVERILADTPEDKQV 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++++++ +L +P  +     + +  T+   +++               ++
Sbjct: 184 ALFSATMPPAIRRLAKKYLNDPVDVATPAATRSTTTVRQRWISVPHHGKFDALTRLLEVE 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D M   IIF   K+    L   L  +GF   A++G++ Q  R +I+   K G++ ++V
Sbjct: 244 NGDGM---IIFVRTKQATEELAEKLRSRGFDAAALNGDLVQAQRERIVGQLKGGSLDILV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N D+P+ AE+Y+HRIGRTGRAGR G+A   V   + + + AI
Sbjct: 301 ATDVAARGLDVDRITHVINHDIPHDAESYVHRIGRTGRAGRSGEAVLFVTPRERRMLSAI 360

Query: 361 EKLIEKKVDWL 371
           EK+  + V+ +
Sbjct: 361 EKVSGRPVEEM 371


>gi|308446500|ref|XP_003087194.1| hypothetical protein CRE_11658 [Caenorhabditis remanei]
 gi|308260015|gb|EFP03968.1| hypothetical protein CRE_11658 [Caenorhabditis remanei]
          Length = 526

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 131/389 (33%), Positives = 210/389 (53%), Gaps = 11/389 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            FA+  L   +  A+   G+  PTP+Q  +IP  L+  D+   +QTG+GKTA+F+LP   
Sbjct: 4   TFAEFSLDESLQKALESLGFTTPTPVQELSIPAALEGKDLLVSSQTGSGKTAAFLLPTLN 63

Query: 59  ------MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                      +     V  P  L++ PTRELA QV  +   + ++        I G   
Sbjct: 64  ALAGQDTFVPFKDRMKAVTQPNILVISPTRELAQQVCQDAIAFVRHMKGVRVAAIMGGMP 123

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             +  +  +GA V++ TPGR+LD  NR ++ ++ ++ L++DEADRMLD+GF   ++ I+ 
Sbjct: 124 FGKQIQQLKGAQVVVATPGRLLDLVNRRQIKLDLVDALIVDEADRMLDLGFSEDLEAISD 183

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L    +QTL+FSAT    +  ++E  +  P+RI + T  ST   I      T     K  
Sbjct: 184 LALNRKQTLMFSATFAPRIINLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHK-- 241

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L     +++ +   ++F + +++   L   L + G SV A+HG + Q  R + L + +
Sbjct: 242 KKLLTHWLNEEDVDQAVVFASTQEDTDMLAEELAEAGLSVVALHGAMPQTVRNRRLRSIR 301

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR GKA TL    
Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGKAITLATYR 361

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           +   I A+E  +E ++     +    +PP
Sbjct: 362 ERGKIRALEDYLEARLSVSEIEGLEPSPP 390


>gi|157376984|ref|YP_001475584.1| ATP-dependent RNA helicase DbpA [Shewanella sediminis HAW-EB3]
 gi|157319358|gb|ABV38456.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 458

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 145/404 (35%), Positives = 223/404 (55%), Gaps = 10/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P+++  +   GY   TPIQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 1   MSFSTLTLKPELLDNLKTMGYDSMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L   R R++   +L+L PTRELA QVA       +  +    L +  G+P   Q   L
Sbjct: 61  HKLNVKRFRIQ---SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH +R +L + ++  LV+DEADRML+MGF+P +  I + +P  RQ
Sbjct: 118 EHGAHIIVGTPGRIIDHLSRERLSLEDVNTLVLDEADRMLEMGFLPDLDYIMAQMPRERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   ++QK++E          +   +ST ++            +K      +LL
Sbjct: 178 TLLFSATFPKQIQKIAEEI---MYEPVMVKVTSTHDSSSIDQHFYQIDSNKDRQKALRLL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   ++ ++FCN K+   ++  +L   GFSV A+HG+++QR R   L  F   +  +M
Sbjct: 235 LLQHRPESAVVFCNTKRETKDVAATLANDGFSVVALHGDLEQRDRDITLMQFANKSASIM 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N++     E +IHRIGRTGRAG  G AFT    +D   I  
Sbjct: 295 VATDVAARGLDIEALDMVINYEFAFDTEVHIHRIGRTGRAGSKGAAFTFYTYDDDYKIKL 354

Query: 360 IEKLIEKKV--DWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIP 400
           +E+ ++  +  + L  + L    P   K+   Q +  +K+   P
Sbjct: 355 LEEYLDHDIVSEGLPPENLLDTLPTQPKMVTLQIDGGKKHKVRP 398


>gi|66814184|ref|XP_641271.1| hypothetical protein DDB_G0280147 [Dictyostelium discoideum AX4]
 gi|74897202|sp|Q54VT4|DDX47_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx47; AltName:
           Full=DEAD box protein 47
 gi|60469306|gb|EAL67300.1| hypothetical protein DDB_G0280147 [Dictyostelium discoideum AX4]
          Length = 546

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 131/411 (31%), Positives = 210/411 (51%), Gaps = 8/411 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LG+ P+++ A    G+ KP  IQ ++IP  L+  D+ G+AQTG+GKTA+FV+P+L
Sbjct: 119 VTFESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVL 178

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             L +    +       L PTRELA Q+AD F   G      T  L+ G           
Sbjct: 179 QKLLEAPQGLFCLA---LAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSLALA 235

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   V+      +    +     + +I+  ++DEADR+    F   + NI  ++P  R 
Sbjct: 236 KKPHVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKVIPKERN 295

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT ++ K+    L NP +++V +   T +T+   ++       K        +
Sbjct: 296 TYLFSATMTSKVAKLQRASLVNPVKVQVASKYQTVDTLLQQYLFVPF---KYKDCYLAYI 352

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      IIF +   +   +   L   GF    I+G++DQ  R+  L+ FK+GT  ++
Sbjct: 353 LNELAGNLTIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTKSIL 412

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V N+DVP  ++ Y+HR+GRT RAG  G+A T+V + D++    
Sbjct: 413 VATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEMYQR 472

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           IE +++KK+D       ++   LE++  A H  A         S+  DR  
Sbjct: 473 IEFVLKKKLDSFPCQEETVLIFLERVQEA-HRIATNELKDKNYSSSSDRHS 522


>gi|294139293|ref|YP_003555271.1| ATP-dependent RNA helicase DbpA [Shewanella violacea DSS12]
 gi|293325762|dbj|BAJ00493.1| ATP-dependent RNA helicase DbpA [Shewanella violacea DSS12]
          Length = 469

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 147/404 (36%), Positives = 222/404 (54%), Gaps = 10/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P+++  +   GY   T IQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 12  MSFSTLTLKPELIENLKTMGYDSMTAIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLL 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L+  R R++   +L+L PTRELA QVA       +  +    L +  G+P   Q   L
Sbjct: 72  HKLDVKRFRIQ---SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH +R  L + N+  LV+DEADRML+MGF+P +  I + +P  RQ
Sbjct: 129 EHGAHIIVGTPGRIIDHLSRDLLNLENVNTLVLDEADRMLEMGFLPDLDYIMAEMPRERQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   ++QKV+E       +  +   +ST ++            +K      +LL
Sbjct: 189 TLLFSATFPKQIQKVAEQI---MFKPVMVKVASTHDSNTIDQHFYQIDSNKDRQKALRLL 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q    + ++FCN K+   ++  +L   GFSV A+HG+++QR R   L  F   +  +M
Sbjct: 246 LLQHRPDSAVVFCNTKRETKDVAATLANDGFSVVALHGDLEQRDRDITLMQFANKSASIM 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N++     E +IHRIGRTGRAG  G AFT    +D   I  
Sbjct: 306 VATDVAARGLDIEALDMVINYEFAFDTEVHIHRIGRTGRAGSKGTAFTFYTLDDDYKIKL 365

Query: 360 IEKLIEKKV--DWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIP 400
           +E+ +E+ +  + L  + L    P   ++   Q    +KN   P
Sbjct: 366 LEEYLERDIVSEGLPPENLLDTFPTQPRMVTLQIEGGKKNKVRP 409


>gi|255036621|ref|YP_003087242.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254949377|gb|ACT94077.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 385

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 133/374 (35%), Positives = 212/374 (56%), Gaps = 5/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-L 60
            F  LGLS  ++  + +  Y +P PIQ   IP +L+ +DV GIA+TG+GKTASFVLP+  
Sbjct: 7   SFQSLGLSEPLLKTIAEQNYTQPYPIQQAAIPAILKGNDVLGIAKTGSGKTASFVLPILE 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKL 119
           +  +   A+ R    L+L PTRELA Q+   F+ + +        L + G          
Sbjct: 67  SFQKMPPAKNRHITALVLVPTRELAVQIGSVFQIFSERLPRKVKTLAVFGGVSINPQMIA 126

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  ++L+ TPGR+L+  +   L +    ILV+DEAD+ML+MGF   +++I  L+P  RQ
Sbjct: 127 LQNVEILVATPGRLLELLSYKALSLAETRILVLDEADKMLNMGFADEMRDIFFLLPKKRQ 186

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           ++LFSAT+ DE+ K++++ L++P RIE+       + I+                L + L
Sbjct: 187 SILFSATLGDEVDKINKDQLKSPVRIEIEEEEQNLDLIKQTGYFVDPDRK---GPLLRYL 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                MK  ++F +  +   NL   L+K G    A+H    Q +R + L+ FK G + ++
Sbjct: 244 IKSQQMKQVLVFVSATRTADNLVEKLKKNGIDAMAMHSKKSQGARTEALNKFKSGKLTVL 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLA+RG+DI  + +V NF++P   ++Y+HRIGRTGRA   G+A +L+  ED+ H   
Sbjct: 304 VATDLASRGIDIQFLPYVINFELPRSPKDYVHRIGRTGRAENPGEAISLICPEDVHHFKI 363

Query: 360 IEKLIEKKVDWLNG 373
           I+K + KKV+ +  
Sbjct: 364 IQKKMGKKVEMMES 377


>gi|195390582|ref|XP_002053947.1| GJ24162 [Drosophila virilis]
 gi|194152033|gb|EDW67467.1| GJ24162 [Drosophila virilis]
          Length = 710

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 118/380 (31%), Positives = 207/380 (54%), Gaps = 5/380 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           FA+    P ++  +   G+  P+PIQ +  P++L+ HD+ GIAQTGTGKT +F+LP M+ 
Sbjct: 304 FAEY---PDLLGEIQKQGFAHPSPIQAQAWPILLKGHDMIGIAQTGTGKTLAFLLPGMIH 360

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKLE 120
              +   R       +L         +    E    ++    A+ I G      Q   +E
Sbjct: 361 TEYQSTPRGTRGGANVLVLAPTRELALQIEMEVKKYSFRQMKAVCIYGGGNRNMQISDVE 420

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA+++ICTPGR+ D    G + +++I  LV+DEADRMLDMGF P I+ +   +   RQT
Sbjct: 421 RGAEIIICTPGRLNDLVQAGVVNVSSITYLVLDEADRMLDMGFEPQIRKVLLDIRPDRQT 480

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT    +++++++++++P ++ V +    A       +        K  +L+  ++
Sbjct: 481 IMTSATWPPGVRRLAQSYMKDPIQVCVGSLDLAATHSVEQVIELLEDDRDKFHVLKSFVK 540

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       I+FC +K    ++   L   GF+   IHGN DQ  R + +++ K G +++++
Sbjct: 541 NMSKTDKIIVFCGRKARADDVSSDLSLAGFATQCIHGNRDQSDREQAIADIKSGIVRILI 600

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + + + ++D      +
Sbjct: 601 ATDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGRAGRLGTSISFITRDDWGIAKEL 660

Query: 361 EKLIEKKVDWLNGDLSSLNP 380
             ++E+    +  +L  ++ 
Sbjct: 661 ITILEEAAQEVPEELRHMSK 680


>gi|154490038|ref|ZP_02030299.1| hypothetical protein PARMER_00267 [Parabacteroides merdae ATCC
           43184]
 gi|154089480|gb|EDN88524.1| hypothetical protein PARMER_00267 [Parabacteroides merdae ATCC
           43184]
          Length = 607

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 141/418 (33%), Positives = 230/418 (55%), Gaps = 17/418 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG++  ++ A+ + GY  P P+Q + IP +L   +DV  +AQTGTGKTA+F LP+L
Sbjct: 3   TFEELGVAAPILKAIQEMGYESPMPVQEEVIPFLLGDDNDVIALAQTGTGKTAAFGLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++        P+ L+L PTREL  Q+AD+   Y K  +    L + G    E+Q K L
Sbjct: 63  QKIDVT---TYHPQALVLCPTRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIESQIKTL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGR+LD  NR  + ++ ++ +++DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KRGVHVVVATPGRLLDLMNRKTVDLSLVKNVIMDEADEMLNMGFTDSINAILAEVPENRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  E+  +++ +++NPK I +    +  E  ++     Y   ++   L  + +
Sbjct: 180 MLLFSATMPKEIANITKKYMKNPKEIVIG---NKNEGNKNIRDIYYMVQARDKYLALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GI+FC  +K    +   L + G++  ++HG + Q  R  ++  F+   IQL+
Sbjct: 237 ADFYPNIYGIVFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRVKNIQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G + ++   ++   I  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGISISICHVKEKGKIRE 356

Query: 360 IEKLIEKKVDW---------LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           IE++I KK +              L +L   +EK+ + +   A     I +K    D+
Sbjct: 357 IERIINKKFEKGEMPTGHAICEKQLFNLVDQIEKVKVNEEEIASLMPQIYRKLEWLDK 414


>gi|257068572|ref|YP_003154827.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
 gi|256559390|gb|ACU85237.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
          Length = 669

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 141/402 (35%), Positives = 227/402 (56%), Gaps = 15/402 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   +  AV + G+  P+ IQ + IP +L+  DV G+AQTGTGKTA+F LP+L 
Sbjct: 85  SFDDIALPAPLRRAVDELGFTTPSAIQAQAIPPLLEGRDVIGVAQTGTGKTAAFGLPLLA 144

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     V+    L+L PTRELA QVAD    +  +      + +  G P+  Q + L 
Sbjct: 145 AIDPSLREVQ---ALVLAPTRELAMQVADAIASFATSIGGLDVVALYGGSPYGPQERALA 201

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  R  L ++ I + V+DEAD ML MGF   ++ I S  P TRQ 
Sbjct: 202 RGAQVVVGTPGRVMDHMRRTNLRLDTIRVAVLDEADEMLRMGFAEDVEEILSHSPDTRQV 261

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   +Q+V++  +Q+P R+ V+  SST +++   +        +        + 
Sbjct: 262 ALFSATMPAAIQRVAQTHMQDPVRVSVSPQSSTVKSVHQTYAVVPF---RHRTGALARVL 318

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +    +  I+F   +     +  +L  +G    +I G++ Q+ R KI+   ++G++Q++V
Sbjct: 319 ATSDAEAAIVFVRTRAAAEEVGTALVGRGLIAASISGDVPQKEREKIVERLRDGSLQVLV 378

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +G V NFDVP  AE+Y+HRIGRTGRAGR G+A T +   + + +  I
Sbjct: 379 ATDVAARGLDVERIGLVVNFDVPKEAESYVHRIGRTGRAGRSGEALTFIGPHERRALKNI 438

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           E+  ++ +       + +  P    D+++H  A +   +P +
Sbjct: 439 ERATKQTLAE-----AVIPSPR---DVSKHRLAAQLTQVPAR 472


>gi|332667550|ref|YP_004450338.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332336364|gb|AEE53465.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 516

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 142/374 (37%), Positives = 223/374 (59%), Gaps = 8/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F++L LS +V  A+ D G+ + TPIQ + IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 4   LNFSELALSQEVQSAINDMGFAEATPIQSEAIPHLLNGKDLIGQAQTGTGKTAAFGIPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKL 119
             ++     V      +L PTRELA QVA+   K  K      ++ + GG   + Q K+L
Sbjct: 64  ESIDCSTREVAAI---VLCPTRELAVQVAEELRKLAKYKKGLFISTIYGGDSIQRQLKEL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  V++ TPGR++DH  R  L +++I++ V+DEAD ML+MGF   I+N+ + +P TRQ
Sbjct: 121 KAGPQVVVGTPGRVMDHLQRKTLRLDHIQMAVLDEADEMLNMGFREDIENVLNQMPETRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + ++++ F ++P  ++V     T  +I+  +     Q  +         
Sbjct: 181 TVLFSATMPRPILEIAKRFQKSPIHVKVVKEELTNASIDQIYYDIPVQAKEAVIARL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                ++  I+F N KK V +L   L   G S  AIHG+++Q  R  +L+ F+ G + ++
Sbjct: 238 IEYYDLQRVIVFANMKKTVDDLTEGLNLLGISAKAIHGDLNQNQRNAVLTAFRGGAVNVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358
           VA+D+AARG+D+  V  VFN+D+P  AE Y+HRIGRTGRAG+ GK+F+ V  + D   + 
Sbjct: 298 VATDVAARGIDVSSVDGVFNYDLPYDAEYYVHRIGRTGRAGKLGKSFSFVTGRNDRYRLR 357

Query: 359 AIEKLIEKKVDWLN 372
            IE   + ++D  N
Sbjct: 358 DIEDFSKVRIDRHN 371


>gi|15233064|ref|NP_191683.1| DEAD/DEAH box helicase, putative (RH12) [Arabidopsis thaliana]
 gi|42572753|ref|NP_974472.1| DEAD/DEAH box helicase, putative (RH12) [Arabidopsis thaliana]
 gi|75335832|sp|Q9M2E0|RH12_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 12
 gi|6850891|emb|CAB71054.1| DEAD box RNA helicase RH12 [Arabidopsis thaliana]
 gi|21539435|gb|AAM53270.1| DEAD box RNA helicase RH12 [Arabidopsis thaliana]
 gi|23197660|gb|AAN15357.1| DEAD box RNA helicase RH12 [Arabidopsis thaliana]
 gi|332646656|gb|AEE80177.1| DEAD-box ATP-dependent RNA helicase 12 [Arabidopsis thaliana]
 gi|332646657|gb|AEE80178.1| DEAD-box ATP-dependent RNA helicase 12 [Arabidopsis thaliana]
          Length = 498

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 112/375 (29%), Positives = 185/375 (49%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L   ++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGKT +F +P+L 
Sbjct: 125 EFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLE 184

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++       + + +IL PTRELA Q +   ++  K  N+ V +  GG        +L +
Sbjct: 185 KIDPNN---NVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQ 241

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P ++ +   +P  RQ L
Sbjct: 242 PVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFL 301

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++     F     R           T+            ++       L S
Sbjct: 302 MFSATFPVTVKA----FKDRHLRKPYVINLMDQLTLMGVTQYYAFVEERQKVHCLNTLFS 357

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++   F+ G  + +V 
Sbjct: 358 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVC 417

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E+Y+HR+GR+GR G  G A  LV  ED   +   E
Sbjct: 418 TDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTE 477

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +  ++ 
Sbjct: 478 QELGTEIKPIPSNID 492


>gi|330999267|ref|ZP_08322984.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
           YIT 11859]
 gi|329575125|gb|EGG56676.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
           YIT 11859]
          Length = 423

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 154/419 (36%), Positives = 226/419 (53%), Gaps = 6/419 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG +P++   +   G+  PTPIQ+K IPLV Q +D+   AQTGTGKTA+FVLPML 
Sbjct: 4   SFKTLGFAPQLEKLIEVNGFTSPTPIQMKAIPLVRQGYDLLAAAQTGTGKTAAFVLPMLQ 63

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            + +     + R+PR L+L PTRELAAQV +     GK+  +  A++ GG+    Q   +
Sbjct: 64  KIIEEPTLYQKRVPRVLVLTPTRELAAQVGETILSLGKDLGVRSAVVFGGVGINPQKAAI 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D L+ TPGR+LD  N+G   ++   IL++DEADRMLDMGF+P ++ I   +P  RQ
Sbjct: 124 AKGLDFLVATPGRLLDLMNQGFADLSKTHILILDEADRMLDMGFLPDLKRILKALPPDRQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT + E++K++  FL        +      +         Y         + + L
Sbjct: 184 TLLFSATFSPEIKKLASEFLN----KPESVEIERNKDSSLVRQTLYRVPKADKHTVLRDL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     ++F   K     L   L K G    AIHG+  Q +R   L  FKE  + ++
Sbjct: 240 IVDNQWDQVLVFTRTKYGADKLVRHLLKDGLVAKAIHGDKSQNARTTALREFKEHKLPIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+++P +AE+Y+HRIGRTGRAG  G+A++LV+ E++    A
Sbjct: 300 VATDIAARGLDIEKLPQVVNYELPQQAEDYVHRIGRTGRAGEAGEAYSLVSPEELPQFAA 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           IEK I+K +   +      +           N  R+  P      GF R     S ++ 
Sbjct: 360 IEKFIKKPLPLSDFPRLDYSDWKVSAPTKPQNKNRRPGPRRNGPAGFKRSDGKPSVRRR 418


>gi|301123369|ref|XP_002909411.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262100173|gb|EEY58225.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 411

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 109/375 (29%), Positives = 186/375 (49%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ + +P++L   +V   A+ GTGKTA+F++P   
Sbjct: 38  EFEDYFLKRELLMGIFEKGFERPSPIQEEAVPIILAGRNVMARAKNGTGKTAAFIIP--- 94

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            LEK     +  + LIL PTRELA Q +   ++ GK+  +   +  GG   +    +L +
Sbjct: 95  CLEKTDTSKKHIQVLILVPTRELALQTSAIVKEIGKHMGIECMVSTGGTSLKDDIMRLYQ 154

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR++D  N+G   ++    +++DEAD++L   F P ++ + +     RQ  
Sbjct: 155 TVHILVGTPGRVMDLANKGVADLSQCSTVIMDEADKLLSPEFQPLLEQLLNHTAKQRQIC 214

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F                 T++           ++       L S
Sbjct: 215 LFSATFPVTVKA----FKDRFVENPYEINLMDELTLKGVSQFYAFVEERQKVHCLNTLFS 270

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  ++Q  R ++   F+ G  + +V 
Sbjct: 271 KLDINQSIIFCNSVNRVELLAKKVTELGYSCFYIHAKMNQAHRNRVFHEFRNGATRHLVC 330

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  ++  ED  ++  IE
Sbjct: 331 SDLFTRGIDIQTVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINMITYEDRFNLYRIE 390

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 391 QELGTEIRPIPPVID 405


>gi|160902412|ref|YP_001567993.1| DEAD/DEAH box helicase domain-containing protein [Petrotoga mobilis
           SJ95]
 gi|160360056|gb|ABX31670.1| DEAD/DEAH box helicase domain protein [Petrotoga mobilis SJ95]
          Length = 530

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 142/402 (35%), Positives = 220/402 (54%), Gaps = 7/402 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHD-VCGIAQTGTGKTASFVLPML 60
            F  +GLS  ++ A+   GY  PTPIQ K IPL+L   + V G AQTGTGKTA+F +P++
Sbjct: 3   KFQQMGLSDNILSAIDRKGYEAPTPIQEKVIPLLLSGKNNVIGQAQTGTGKTAAFGIPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++   +    + L+L PTRELA QV +  +    N  L +  + GG+    Q + L+
Sbjct: 63  ERLDE---KANDVQALVLTPTRELALQVCNEIDSLKGNKRLNLLPVYGGVSIGNQIRALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R  D+++ TPGRI+DH NRG L +  I+ LVIDEAD MLDMGFI  ++ I S     +Q 
Sbjct: 120 RRVDLVVGTPGRIIDHLNRGTLDITKIKYLVIDEADEMLDMGFIEDVEMILSKTNKEKQI 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSATM   +  ++   + N + +     +    T++      Y         L   L 
Sbjct: 180 LMFSATMPQRIVTLARKHMGNFETVTTVQENKEDITVKKAKQIYYMISESNKIELLSRLI 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             DT   G++F   K     + + L K+G+   A++G++ Q  R +I+  FK   I++++
Sbjct: 240 DIDTNFYGLVFTKTKVQSEEIANELIKKGYEAEALNGDVSQNQRERIMDRFKSKRIKILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D+AARG+DI ++ +V N+ +P   ENYIHRIGRT RAG  G A T V   + +    I
Sbjct: 300 STDVAARGIDIDNLKYVINYSLPQNPENYIHRIGRTARAGNEGTAITFVTPTEYRRFMFI 359

Query: 361 EKLIEKKVDWLNGDLSS--LNPPLEKI-DIAQHNHARKNNPI 399
           +   +  ++      +   +N  +EKI D  + N A+  +PI
Sbjct: 360 KHSSKAIIEEAKIPQAKDIVNAKVEKIKDEIKSNLAKDIDPI 401


>gi|56461463|ref|YP_156744.1| ATP-dependent RNA helicase RhlB [Idiomarina loihiensis L2TR]
 gi|61214743|sp|Q5QYF8|RHLB_IDILO RecName: Full=ATP-dependent RNA helicase rhlB
 gi|56180473|gb|AAV83195.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 425

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 134/413 (32%), Positives = 210/413 (50%), Gaps = 8/413 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L PK+  A+  AG+   TPIQ  ++P+ L   DV G AQTGTGKT +F+L     
Sbjct: 11  FADLALHPKIQQAISSAGFEYCTPIQALSLPVALSNRDVAGQAQTGTGKTLAFLLATFNR 70

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L +  +  +    PR LI+ PTRELA Q+A + +   ++  L + ++ GG  +E Q ++L
Sbjct: 71  LMQNESSEKTESGPRALIMAPTRELAIQIAHDADALIEHCGLKMGVIYGGEGYEGQKEQL 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+L+ T GR++D + +    + +IE++V+DEADRM D+GFI  I+ +   +P   +
Sbjct: 131 AAQPDILVGTTGRLIDFYKQDLFSLKDIEVVVLDEADRMFDLGFIDDIRYLLQKMPDPSK 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L    + T   +     +       ++       +T        +     +   L   L
Sbjct: 191 RLNLLFSATLSYRVQELAYEHMNAPTKLEVEPLQ-KTATRVTEELFYPSKPEKFPLLLTL 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +D     I+F N K     +   L         + G++ Q+ R++IL +F EG +  +
Sbjct: 250 IEEDWPDKAIVFANTKHGCEKVHGWLVANEHRAGLLTGDVPQKKRLRILEDFAEGKLDFL 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGL IP+V HV+NFD+P+  E+Y+HRIGRTGRAG  G A +L  +E + ++ A
Sbjct: 310 VATDVAARGLHIPEVTHVYNFDLPDDCEDYVHRIGRTGRAGASGAAISLACEEYVYNLPA 369

Query: 360 IEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           IE  I   +     D    LS L  P       +HN          + +G  R
Sbjct: 370 IEDYIGHTIPVTKYDGDALLSDLRRPRPIQRRRRHNSGGGKGKPRGRRSGPPR 422


>gi|295394596|ref|ZP_06804815.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972489|gb|EFG48345.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 459

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 152/436 (34%), Positives = 237/436 (54%), Gaps = 4/436 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+   +V ++ +AG   P PIQ  T+P+ L   D+ G A+TGTGKT  F +P+L 
Sbjct: 5   TFADLGVEAPIVESLTNAGITHPFPIQALTLPVALTGADIIGQAKTGTGKTLGFGIPLLQ 64

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   ++R +   PR L++ PTRELA QVAD+     + ++ ++  + GG  FE Q + L
Sbjct: 65  RILDEQSREQGRAPRALVVVPTRELAHQVADDLRVASRTFSPSIVTIYGGKDFEPQIRAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GADV++ TPGR+LD + R  L  ++I   V DEAD MLD+GF+P ++ I + +P  RQ
Sbjct: 125 KDGADVVVGTPGRLLDLYGRRVLNFSHITTAVFDEADEMLDLGFLPDVEKIVAALPAKRQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  ++  ++  ++  P  I     S T+ T  +     Y  +S     L   +
Sbjct: 185 TMLFSATMPGQVIALARRYMTQPTHIRATQASDTSTTSVNTKQYVYRAHSMDKTELVGRI 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+    L   L+ +GF   A+HG+++Q  R K L  F++GT  ++
Sbjct: 245 LRAEGRGRTIIFARTKRTADRLTGELKARGFQAQALHGDLNQHMREKALKRFRDGTTDVL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAG  G A TL+  ED+     
Sbjct: 305 VATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGNTGIAVTLIDWEDVAKWKL 364

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR--KNNPIPQKSTGFDRRKKNYSSQK 417
           I + +    D      S+       ++IA+    R  +     +KS+   R  K+ S++ 
Sbjct: 365 INRTLGLDFDAPVETYSTSPHLFSDLNIAKGTKGRMPRAKDADEKSSNSQRPAKSRSARG 424

Query: 418 SHIPLKESEKISKLQQ 433
           +    K   +    ++
Sbjct: 425 NAPQRKPRAQKRPRRR 440


>gi|15603786|ref|NP_246860.1| ATP-dependent RNA helicase RhlB [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|32363392|sp|Q9CJS1|RHLB_PASMU RecName: Full=ATP-dependent RNA helicase rhlB
 gi|12722355|gb|AAK04005.1| RhlB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 423

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 137/416 (32%), Positives = 218/416 (52%), Gaps = 4/416 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L  +V+ A+ + G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+    
Sbjct: 9   LRFSDLPLHHQVLAALQEKGFDYCTPIQALSLPMSLAGKDVAGQAQTGTGKTMAFLTATF 68

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                ++G    R PR LIL PTRELA Q+ ++     K   L   L  GG  +E Q K 
Sbjct: 69  HHLLTQQGDKGGRQPRALILAPTRELAVQINNDAALLTKATGLKTGLAYGGDGYEKQLKA 128

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +E+G D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P  +
Sbjct: 129 IEQGVDILIGTTGRVIDYVKQGIVRLDKIQVVVLDEADRMFDLGFIKDIRYLLRKCPAPQ 188

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             L    + T   +     F       E        +T        +   ++    L   
Sbjct: 189 HRLTMLFSATLSYKVRELAFEDMND-PEYVEIEPLQKTGHRIKEELFYPSNQDKMALLLT 247

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  ++  +  IIF N K    ++   L   G  V  + G++ Q+ R+ +L  F EG + +
Sbjct: 248 LLEEEWPERCIIFANTKHRCEDIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTEGHLDI 307

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ 
Sbjct: 308 LVATDVAARGLHISDVSHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLP 367

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-KKNY 413
           AIE+ I   +     D+++L    +   I + N+  KN+    ++    R  K+N+
Sbjct: 368 AIEEYISHSIPVSQYDVAALLTLPKPYRIKRGNNNSKNSANSNRTFQKKRSLKRNF 423


>gi|150020730|ref|YP_001306084.1| DEAD/DEAH box helicase domain-containing protein [Thermosipho
           melanesiensis BI429]
 gi|149793251|gb|ABR30699.1| DEAD/DEAH box helicase domain protein [Thermosipho melanesiensis
           BI429]
          Length = 514

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 125/404 (30%), Positives = 207/404 (51%), Gaps = 15/404 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPM 59
           M+F D  LS K + A+ + G+ KPTP+Q + IP++L +  ++   A+TGTGKTA+F +P+
Sbjct: 1   MNFEDFNLSEKTLYAINEKGFEKPTPVQKRVIPILLNKEKNLIVQAKTGTGKTAAFGIPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + +LE            I+       A          K   L +  + GG     Q + L
Sbjct: 61  IELLESKGY-----VQAIILTPTRELALQVSEEINSLKRKRLKILPVYGGQSISRQIEHL 115

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG D+++ TPGRILDH  R  + ++ +E  ++DEAD MLDMGFI  ++ I       + 
Sbjct: 116 KRGVDIVVGTPGRILDHLERKTIDLSKVEYFILDEADEMLDMGFIDDVEKILKSTSDEKI 175

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+   +  +++ +++N + I++     T    E                    +
Sbjct: 176 FLMFSATIPRRIIDLAKKYIKNYEVIKIADKQLTTNLTEQ---IYIELNENDKFEALCRI 232

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +    G++FC  K  V N+   L ++G+   A+HG+  Q  R ++L  FKE  I ++
Sbjct: 233 IDVEDDFYGMVFCRTKVEVDNVSSKLIERGYDAEALHGDFSQYQRERVLKKFKEKRINIL 292

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV N+ +P   E+Y+HR+GRTGRAGR G A T V  ++ + +  
Sbjct: 293 VATDVAARGIDISGLTHVINYSIPLNPEHYVHRVGRTGRAGREGVAITFVTPKEYRQLFR 352

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           I+K  + K+           P +E+I  A+    +      +K 
Sbjct: 353 IKKFSKAKIKEGKI------PSVEQIIRAKSERIKSELLKEEKK 390


>gi|297841061|ref|XP_002888412.1| hypothetical protein ARALYDRAFT_315588 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334253|gb|EFH64671.1| hypothetical protein ARALYDRAFT_315588 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 587

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 135/406 (33%), Positives = 214/406 (52%), Gaps = 16/406 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     V+  + + G V+PTPIQ++ +P++L   D+ GIA TG+GKT  FVLPM+ 
Sbjct: 143 NFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIM 202

Query: 62  I-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
           I     +    A    P  LI+ P+RELA Q  +  E++           L   L IGGI
Sbjct: 203 IALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGI 262

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + ++RG  +++ TPGR+ D   + K+ ++    L +DEADR++D+GF   I+ +
Sbjct: 263 DMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREV 322

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 323 FDHFKSQRQTLLFSATMPTKIQI----FARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 378

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IFC  K +V ++   L  +G    AIHG  DQ  R   +S+
Sbjct: 379 EAKIVYLLECLQKTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISS 438

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 439 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 498

Query: 351 KEDIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           K   +  +  ++ L+++    +   L+ LN P+E+ +   +    K
Sbjct: 499 KNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEEAETIANASGVK 544


>gi|297792439|ref|XP_002864104.1| hypothetical protein ARALYDRAFT_918160 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297309939|gb|EFH40363.1| hypothetical protein ARALYDRAFT_918160 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 587

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 135/406 (33%), Positives = 214/406 (52%), Gaps = 16/406 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     V+  + + G V+PTPIQ++ +P++L   D+ GIA TG+GKT  FVLPM+ 
Sbjct: 143 NFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIM 202

Query: 62  I-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
           I     +    A    P  LI+ P+RELA Q  +  E++           L   L IGGI
Sbjct: 203 IALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGI 262

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + ++RG  +++ TPGR+ D   + K+ ++    L +DEADR++D+GF   I+ +
Sbjct: 263 DMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREV 322

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 323 FDHFKSQRQTLLFSATMPTKIQI----FARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 378

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IFC  K +V ++   L  +G    AIHG  DQ  R   +S+
Sbjct: 379 EAKIVYLLECLQKTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISS 438

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 439 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 498

Query: 351 KEDIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           K   +  +  ++ L+++    +   L+ LN P+E+ +   +    K
Sbjct: 499 KNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEEAETIANASGVK 544


>gi|15241415|ref|NP_199941.1| DEAD-box protein abstrakt, putative [Arabidopsis thaliana]
 gi|75335491|sp|Q9LU46|RH35_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 35
 gi|8843865|dbj|BAA97391.1| DEAD-box protein abstrakt [Arabidopsis thaliana]
 gi|110740861|dbj|BAE98527.1| DEAD-box protein abstrakt [Arabidopsis thaliana]
 gi|332008678|gb|AED96061.1| DEAD-box ATP-dependent RNA helicase 35 [Arabidopsis thaliana]
          Length = 591

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 135/406 (33%), Positives = 214/406 (52%), Gaps = 16/406 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     V+  + + G V+PTPIQ++ +P++L   D+ GIA TG+GKT  FVLPM+ 
Sbjct: 147 NFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIM 206

Query: 62  I-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
           I     +    A    P  LI+ P+RELA Q  +  E++           L   L IGGI
Sbjct: 207 IALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGI 266

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + ++RG  +++ TPGR+ D   + K+ ++    L +DEADR++D+GF   I+ +
Sbjct: 267 DMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREV 326

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 327 FDHFKSQRQTLLFSATMPTKIQI----FARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 382

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IFC  K +V ++   L  +G    AIHG  DQ  R   +S+
Sbjct: 383 EAKIVYLLECLQKTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISS 442

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 443 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 502

Query: 351 KEDIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           K   +  +  ++ L+++    +   L+ LN P+E+ +   +    K
Sbjct: 503 KNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEEAETIANASGVK 548


>gi|330831669|ref|YP_004394621.1| ATP-dependent RNA helicase rhlB [Aeromonas veronii B565]
 gi|328806805|gb|AEB52004.1| ATP-dependent RNA helicase rhlB [Aeromonas veronii B565]
          Length = 416

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 136/417 (32%), Positives = 217/417 (52%), Gaps = 5/417 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT---- 61
           +GL P+V+  +   G+   TPIQ  ++PL+++ HD+ G AQTGTGKT +F+         
Sbjct: 1   MGLEPEVLAGLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTIAFLAATFNYLLT 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                   V  PR +I+ PTRELA Q+ ++ +    +  L + L  GG  ++ Q   LE+
Sbjct: 61  HPLTKPRLVNQPRAIIMAPTRELAVQIYNDADSIAASTGLKLGLAYGGEGYDKQLAVLEQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+LI T GRI+D+F    + ++NI+++V+DEADRM D+GFI  I+ +   +P   + L
Sbjct: 121 GVDILIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFDLGFIKDIRFLFRRMPPATERL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
               + T  L+     +        V         +       Y     K  LL   L  
Sbjct: 181 SMLFSATLSLRVQELAYEHMNHPEHVQVEPEQMTGVRIKEELFYPSNEDKMLLLLS-LME 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++  +  I+F N K    ++   LE  G  V  + G++ Q+ RMKIL +F +G + ++VA
Sbjct: 240 EEWPEKAIVFANTKHVCEDVHAWLENDGHRVGLLTGDVPQKKRMKILEDFTKGALDILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGL IPDV HVFN+D+P+ AE+Y+HRIGRTGRAG+ G + +L  ++   ++ AIE
Sbjct: 300 TDVAARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKSGHSISLACEDYAFNLPAIE 359

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           + I   +     D  +L   +        N    N  +  +  G +   +    +KS
Sbjct: 360 EYIHHAIPVSKYDREALLDDVTPPKRVFRNRQPVNRNMRDRQGGGNSNNRRRPPRKS 416


>gi|312892436|ref|ZP_07751930.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311295070|gb|EFQ72245.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 615

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 147/475 (30%), Positives = 257/475 (54%), Gaps = 24/475 (5%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLP 58
           M+ F+ LG+   +V A+ D G+  PTPIQ ++IP++L   +D  G+AQTGTGKTA+F LP
Sbjct: 1   MNPFSQLGIRHDIVNAITDLGFENPTPIQEQSIPVLLTGSNDFVGLAQTGTGKTAAFGLP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNK 117
           +L +L+        P+ LIL PTREL  Q+ ++ + Y KN +    + + G      Q +
Sbjct: 61  LLELLDF---EQNHPQALILCPTRELCLQITNDLKNYSKNMSNVNVVAVYGGANISDQLR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +++RG  +++ TPGR+LD  NR  +  +++  +V+DEAD ML+MGF   I +I S  P  
Sbjct: 118 QIKRGVQIVVATPGRMLDIINRKAINFSDVNYVVLDEADEMLNMGFQEDIDSILSTTPDD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           ++T LFSATM  E++++++ ++ +P  + +   ++      +     Y   ++      +
Sbjct: 178 KKTWLFSATMPSEVRRIAKKYMTDPFELTMGEKNTGN---VNIEHEYYIVRARDKYAAFK 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +    GI+FC  K     +  +L K G++  ++HG++ Q+ R K++  ++E ++Q
Sbjct: 235 RIVDFNPEIFGIVFCRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRERSLQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L++A+D+AARG+D+ DV HV N+ +P+  ENY HR GRT RAG+ G +  ++  +++  I
Sbjct: 295 LLIATDVAARGIDVNDVTHVINYSLPDEIENYTHRSGRTARAGKTGVSIAIINSKELGKI 354

Query: 358 DAIEKLIEKKVDWLNGDLSS--------LNPPLEKIDIAQHNHARKNNPIPQKSTGF-DR 408
             IE++I KK  ++ G++ +        L   + K+   Q N  +    IP+    F D 
Sbjct: 355 RQIERVIGKK--FIKGEIPNGFDVCEKQLFAIVHKVHNVQVNEQQIEQYIPRIMDEFKDL 412

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
            K++   + + I         K   D+     D    RG +        RG  N 
Sbjct: 413 EKEDIIKRFASIEFNRFLDYYKNAPDLN-APLDDRAVRGELGD---RAPRGTGNS 463


>gi|291566695|dbj|BAI88967.1| ATP-dependent RNA helicase [Arthrospira platensis NIES-39]
          Length = 484

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 134/368 (36%), Positives = 212/368 (57%), Gaps = 6/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+S +    +   G+ +PTP+QI+ IP +L   DV G+AQTGTGKTA+F LP+L 
Sbjct: 23  SFESLGISEQRARHLETLGFTEPTPVQIQAIPEMLSGRDVVGMAQTGTGKTAAFSLPILE 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + L+L PTRELA QV +    +  +  L V  + GG   + Q ++L R
Sbjct: 83  QIDVH---AAGIQALVLTPTRELAMQVKEAIRTFSDDNALYVLTVYGGQSIDRQIQRLRR 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGRILD  NRG+L ++ +  LV+DEAD ML MGFI  ++ I        +  
Sbjct: 140 GVQVVVGTPGRILDLLNRGELKLDLLRWLVLDEADEMLSMGFIQDVEKILESADSEHRQT 199

Query: 182 LFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            F +   D  + K+    L++P  ++V TP +T + IE         +SK      + + 
Sbjct: 200 AFFSATMDASISKLVRRHLKSPVTVKVETPKATPKRIEQSVYMVPRGWSKAR--ALEPIL 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  ++ IIF   K++  +L + L+  G SV   HGN++Q  R ++L   +   ++ +V
Sbjct: 258 ELEDPESAIIFVRTKQSAADLTNQLQAAGHSVDEYHGNLNQSQRERLLMRLRRRQVRWIV 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P++ ++Y+HRIGRTGRAGR GKA TL+   D + +  I
Sbjct: 318 ATDIAARGLDVDHLTHVINYDLPDQVDSYVHRIGRTGRAGREGKAITLIQPIDRRKLRNI 377

Query: 361 EKLIEKKV 368
           E+ + + +
Sbjct: 378 ERHLRQTL 385


>gi|167382648|ref|XP_001736203.1| ATP-dependent RNA helicase DBP2 [Entamoeba dispar SAW760]
 gi|165901364|gb|EDR27447.1| ATP-dependent RNA helicase DBP2, putative [Entamoeba dispar SAW760]
          Length = 535

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 129/383 (33%), Positives = 211/383 (55%), Gaps = 5/383 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +      ++  + +  Y+KPTPIQ    P+VLQ  DV GIA+TG+GKT SF++P +
Sbjct: 153 LTFEECNFPQSILDVIKEQNYIKPTPIQAIGWPIVLQGKDVVGIAETGSGKTISFLIPAI 212

Query: 61  TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +           PR LIL PTREL  Q+AD   K+ K  ++      GG+P   Q K 
Sbjct: 213 IHILDTPLAQYREGPRVLILAPTRELVCQIADEAIKFTKGTSIKTVRCFGGVPQSCQMKD 272

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            + G D+ + TPGR++D   RG   ++    L++DEADRML+MGF   +Q+I   +   R
Sbjct: 273 FQSGCDICVATPGRLIDFIKRGVTNLSRCTFLILDEADRMLEMGFEVQVQDIIGQIRPDR 332

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT++++AT    +Q+ +  F+ +P +I +  P   A       V    +  +   +  ++
Sbjct: 333 QTVMWTATWPQAIQQFALGFMFHPLQINIGNPDLHANESVKQIVEVCQERDRDSKMN-EI 391

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++   + K  +IF   K++  NLC+ L  Q + V  +HG+  Q  R + LS+FK G +  
Sbjct: 392 VKRIGSEKKVLIFVKTKRSADNLCYKLRDQRYRVACMHGDKAQAERDRALSDFKSGAVNY 451

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH--GKAFTLVAKEDIKH 356
           ++A+DLA+RGLDI ++  V N+++P+  ENYIHRIGRTGR GR   G+A +L    D + 
Sbjct: 452 LIATDLASRGLDIRNIEIVINYEMPSDIENYIHRIGRTGRMGRSVEGEAISLFTYADARL 511

Query: 357 IDAIEKLIEKKVDWLNGDLSSLN 379
              +  +++     +  +L ++ 
Sbjct: 512 AKDLISVLKGAHQEVPSELLNMR 534


>gi|301602401|gb|ADK79106.1| vasa-like protein [Dicentrarchus labrax]
          Length = 637

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 129/388 (33%), Positives = 206/388 (53%), Gaps = 13/388 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 200 MTFDEAGLCESLRKTVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 259

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + ++ P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 260 QQLMADGVAASSFSELQEPEAVIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGH 319

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
           Q +++ RG +VL  TPGR+LD   RGK+ ++ +   V+DEADRMLDMGF P ++      
Sbjct: 320 QIREISRGCNVLCGTPGRLLDVIGRGKVGLSKVRYFVLDEADRMLDMGFEPDMRRLVGSP 379

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++Q+++ +FL+             A +          ++SK
Sbjct: 380 GMPSKENRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFVQVTKFSK 439

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +       L     M+  ++F   K+    +   L ++     +IHG+ +QR R + L++
Sbjct: 440 RE--QLLDLLKTTGMERTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQREREQALAD 497

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDIPDV HV NFD+PN  + Y+HRIGRTGR G  G+A +   
Sbjct: 498 FRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFFD 557

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSS 377
            + D +   ++  ++ K    +   L  
Sbjct: 558 PDSDDQLARSLVTILSKAQQEVPSWLED 585


>gi|189913376|ref|YP_001964605.1| ATP-dependent RNA helicase, DEAD-box family (DeaD) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
 gi|167781444|gb|ABZ99741.1| ATP-dependent RNA helicase, DEAD-box family (DeaD) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 534

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 131/360 (36%), Positives = 215/360 (59%), Gaps = 7/360 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF   GL P+++  + +AG+  P+PIQ + IPLVL+  D+   AQTGTGKTA++ LP L 
Sbjct: 16  DFQSFGLRPEILQGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQTGTGKTAAYGLPCLN 75

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + L+L PTRELA QV+D   K GK+  +    + GG  +  Q  ++ +
Sbjct: 76  RIKVE----DGMQVLVLTPTRELALQVSDELFKLGKHLGIKTTTIYGGSSYSKQITQVAK 131

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V + TPGR+LD     +L      ++++DEAD MLDMGF+  I++I +L+P  RQTL
Sbjct: 132 GAQVAVATPGRLLDLLKGKELKNFKPSMVILDEADEMLDMGFMDDIESIFNLLPTKRQTL 191

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++K++  +  +P  +++     +++ IE  +        +   +       
Sbjct: 192 LFSATMPEPIKKLASKYQTHPAHVKIAATEKSSKNIEQVYYIIDEAEREIAVVRIL---D 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     IIF   KK   +L  +L  +G+ V A+HG+++Q+ R ++L +  +G ++++VA
Sbjct: 249 YENPFKAIIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVKILVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ D+  V N+ +P  +E+Y HRIGRTGRAG+ GKA TLV   + + +  ++
Sbjct: 309 TDVAARGLDVKDLSLVINYHLPFDSESYTHRIGRTGRAGKSGKAVTLVTTRESRALLRLK 368


>gi|189913047|ref|YP_001964936.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167777723|gb|ABZ96023.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
          Length = 529

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 131/360 (36%), Positives = 215/360 (59%), Gaps = 7/360 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF   GL P+++  + +AG+  P+PIQ + IPLVL+  D+   AQTGTGKTA++ LP L 
Sbjct: 11  DFQSFGLRPEILQGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQTGTGKTAAYGLPCLN 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + L+L PTRELA QV+D   K GK+  +    + GG  +  Q  ++ +
Sbjct: 71  RIKVE----DGMQVLVLTPTRELALQVSDELFKLGKHLGIKTTTIYGGSSYSKQITQVAK 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V + TPGR+LD     +L      ++++DEAD MLDMGF+  I++I +L+P  RQTL
Sbjct: 127 GAQVAVATPGRLLDLLKGKELKNFKPSMVILDEADEMLDMGFMDDIESIFNLLPTKRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++K++  +  +P  +++     +++ IE  +        +   +       
Sbjct: 187 LFSATMPEPIKKLASKYQTHPAHVKIAATEKSSKNIEQVYYIIDEAEREIAVVRIL---D 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     IIF   KK   +L  +L  +G+ V A+HG+++Q+ R ++L +  +G ++++VA
Sbjct: 244 YENPFKAIIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVKILVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ D+  V N+ +P  +E+Y HRIGRTGRAG+ GKA TLV   + + +  ++
Sbjct: 304 TDVAARGLDVKDLSLVINYHLPFDSESYTHRIGRTGRAGKSGKAVTLVTTRESRALLRLK 363


>gi|238023960|ref|YP_002908192.1| DEAD/DEAH box helicase [Burkholderia glumae BGR1]
 gi|237878625|gb|ACR30957.1| DEAD/DEAH box helicase [Burkholderia glumae BGR1]
          Length = 461

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 145/370 (39%), Positives = 208/370 (56%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  + +  Y +PTP+Q + IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIEPLLRNLRELNYAEPTPVQARAIPAVLGGKDVLAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +    V   R    +L PTRELA QV  +F  YG    L +    GG+    Q  K
Sbjct: 61  QRLVQQGPAVSSNRARVLVLVPTRELAEQVLQSFADYGCGLELRMLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + +  LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVRTLVLDEADRMLDLGFARELDAVFAALPTRR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT  DE++ ++   L  P +I V+ P++TA  +    V    +   +  +    
Sbjct: 181 QTLLFSATFPDEIRAMAAKRLHEPVQISVSAPNATASRVRQWVVTVDKRNKPELFMHLLA 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     ++F   +  V  L   LE  G +V  IHG+  Q +R++ L  FK G +++
Sbjct: 241 EHGWQH---ALVFARTRAGVDYLAARLEAAGHAVDTIHGDKPQPARLRALERFKRGEVRM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEKKV 368
           AIE LI + +
Sbjct: 358 AIEALIRQTL 367


>gi|307183175|gb|EFN70084.1| Probable ATP-dependent RNA helicase DDX17 [Camponotus floridanus]
          Length = 705

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 138/448 (30%), Positives = 223/448 (49%), Gaps = 13/448 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +      V+  +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP    
Sbjct: 111 FEESNFPDYVMEEIKKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPATVH 170

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  LIL PTRELA Q+      +G +  +    + GG P   Q + LE
Sbjct: 171 INHQPRLNRGDGPIVLILAPTRELAQQIQTVARDFGSSSCIRNTCIFGGSPKGPQARDLE 230

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 231 RGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 290

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLL 239
           L++SAT   E+Q ++E+FL +  +I + + S  A       +    ++ K+         
Sbjct: 291 LMWSATWPKEVQALAEDFLTDYIQINIGSLSLAANHNIRQIIEICQEHEKEYKLSQLLRE 350

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   KK V ++  ++++ G+S  +IHG+  Q  R  +LS F+ G   ++
Sbjct: 351 IGTERGSKMIIFVETKKKVDDITKTIKRDGWSAISIHGDKSQPERDYVLSEFRNGKTMIL 410

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV +V NFD PN +E+YIHRIGRTGR    G A+      + +    
Sbjct: 411 VATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNNARQAKE 470

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS---- 415
           +  ++E+    +N  L+ +   +      Q+   R+     + +   +   +N  S    
Sbjct: 471 LIAVLEEAGQTINPQLADIANSMRN----QYGKGRQRWSHGRVNKDNNGSPRNNISPTIN 526

Query: 416 --QKSHIPLKESEKISKLQQDIQENDAD 441
             Q  HIP    +     ++ +  +  +
Sbjct: 527 NWQNQHIPQTTQQNQVAQEKMVARHQRN 554


>gi|198452173|ref|XP_001358660.2| GA20653 [Drosophila pseudoobscura pseudoobscura]
 gi|198131816|gb|EAL27801.2| GA20653 [Drosophila pseudoobscura pseudoobscura]
          Length = 743

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 114/378 (30%), Positives = 200/378 (52%), Gaps = 5/378 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           FA+    P ++  +   G+ KP+PIQ +  P++L+ HD+ GIAQTGTGKT +F+LP M+ 
Sbjct: 314 FAEY---PDLLGEIEKQGFPKPSPIQSQAWPILLKGHDMIGIAQTGTGKTLAFLLPGMIH 370

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +   R +     +L         +    E    ++    A+ + G            
Sbjct: 371 TEYQSIPRGQRGGANVLVLAPTRELALQIEMEVKKYSFRDMRAVCVYGGGCRRMQISDVE 430

Query: 122 GA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ICTPGR+ D      + +++I  LV+DEADRMLDMGF P I+ +   +   RQT
Sbjct: 431 RGAEIIICTPGRLNDLVQAKVIDVSSITYLVLDEADRMLDMGFEPQIRKVLMDIRPDRQT 490

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT    +++++++++ NP ++ V +    A       +      S+K  +++  ++
Sbjct: 491 IMTSATWPPGVRRLAQSYMNNPIQVCVGSLDLAATHSVKQVIELLEDESEKYGIIKSFIK 550

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       I+FC +K    +L   L   GF    IHG+ DQ  R + +++ K G +++++
Sbjct: 551 NMTKTDKIIVFCGRKARADDLSSDLTLDGFMTQCIHGSRDQSDREQAIADIKSGVVRILI 610

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + + + + D      +
Sbjct: 611 ATDVASRGLDIEDISHVINYDFPRNIEEYVHRVGRTGRAGRTGTSISFITRSDWGMAQEL 670

Query: 361 EKLIEKKVDWLNGDLSSL 378
             ++E+    +   L S+
Sbjct: 671 INILEEADQVVPEQLHSM 688


>gi|226496647|ref|NP_001140760.1| hypothetical protein LOC100272835 [Zea mays]
 gi|194700960|gb|ACF84564.1| unknown [Zea mays]
 gi|195623902|gb|ACG33781.1| ATP-dependent RNA helicase dhh1 [Zea mays]
          Length = 499

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 114/375 (30%), Positives = 194/375 (51%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 126 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 185

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + +IL PTRELA Q +   ++ GK  N+ V +  GG   +    +L +
Sbjct: 186 KIDP---EKNAIQVVILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQ 242

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P ++ +   +P +RQ L
Sbjct: 243 PVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLLAPEFQPSVEALIHFLPPSRQLL 302

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +++  + +L  P  I          T++           ++       L S
Sbjct: 303 MFSATFPVTVKEFKDKYLPRPYVI----NLMDELTLKGITQYYAFVEERQKVHCLNTLFS 358

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 359 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 418

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 419 TDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRYGHLGLAVNLITYEDRFNLYRIE 478

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 479 QELGTEIKTIPPQID 493


>gi|261868794|ref|YP_003256716.1| ATP-dependent RNA helicase RhlB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414126|gb|ACX83497.1| ATP-dependent RNA helicase RhlB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 418

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 132/403 (32%), Positives = 207/403 (51%), Gaps = 10/403 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P V+ A+ D G+   TPIQ  ++P+ L+  DV G AQTGTGKT +F+  +   
Sbjct: 11  FADLALHPLVLQALNDKGFDFCTPIQALSLPITLRGKDVAGQAQTGTGKTIAFLSALFHH 70

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                 +     PR LIL PTRELA Q+  + + + K      AL  GG  ++ Q K +E
Sbjct: 71  LLTYPKQTEANQPRALILAPTRELAVQIEHDAQIFLKTTKFKTALAYGGDGYDKQLKAIE 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI T GR++D+  +G + ++ I+ +V+DEADRM D+GFI  I+ +    P  +Q 
Sbjct: 131 NGVDVLIGTTGRVIDYVKQGVIRLDQIQTVVLDEADRMFDLGFIRDIRYLLRKCPPPQQR 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L    + T   +     F       E        +T +      +   ++    L   L 
Sbjct: 191 LTMLFSATLSYKVRELAFEDMNS-PEYVEIEPEQKTGQQIKEELFYPSNRDKMPLLLTLL 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G + ++V
Sbjct: 250 EEEWPERCIVFANTKHKCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKKFTDGDLDILV 309

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL I +V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   ++   ++ AI
Sbjct: 310 ATDVAARGLHIAEVTHVFNYDLPDDREDYVHRIGRTGRAGESGISISFACEQYAMNLPAI 369

Query: 361 EKLIEKKVDWLNGD----LSSLNPP---LEKIDIAQHNHARKN 396
           E+ I   +     D    L  L  P     + + +  N+ R+ 
Sbjct: 370 EEYIGHSITVSQYDPNALLQDLPKPYRLKRQTNFSAQNNNRRK 412


>gi|268575270|ref|XP_002642614.1| C. briggsae CBR-CGH-1 protein [Caenorhabditis briggsae]
 gi|187032079|emb|CAP28848.1| CBR-CGH-1 protein [Caenorhabditis briggsae AF16]
          Length = 429

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 112/382 (29%), Positives = 187/382 (48%), Gaps = 10/382 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  L   ++  + + G+ KP+PIQ  +I + L   D+   A+ GTGKT ++ +P++
Sbjct: 42  VEFEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVI 101

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++  + +++ PTRELA Q +    +  K+  L V +  GG        +L 
Sbjct: 102 EKIQPA---LKAIQAMVIVPTRELALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLN 158

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGRILD   +G   M N + LV+DEAD++L   F   +  + + +P  RQ 
Sbjct: 159 GTVHLVIATPGRILDLMEKGVAKMENCKTLVLDEADKLLSQDFQGILDRLINFLPKERQI 218

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L+SAT    +      F+Q               T+            K+       L 
Sbjct: 219 MLYSATFPQTVTT----FMQKHMHKPYEINLMEELTLLGVTQYYAFVQEKQKVHCLNTLF 274

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F++G  + +V
Sbjct: 275 RKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLV 334

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  I
Sbjct: 335 CSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRHTLRRI 394

Query: 361 EKLIEKKVDWLNGDLSSLNPPL 382
           E+ +  +++ +     +++P L
Sbjct: 395 EQELRTRIEPIP---KTVDPKL 413


>gi|255654878|ref|ZP_05400287.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-23m63]
 gi|296449624|ref|ZP_06891399.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP08]
 gi|296878056|ref|ZP_06902072.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP07]
 gi|296261522|gb|EFH08342.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP08]
 gi|296430956|gb|EFH16787.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP07]
          Length = 375

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 130/375 (34%), Positives = 209/375 (55%), Gaps = 6/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  LG+S   +  +  +G   PTPIQ ++I L+ +  DV   AQTGTGKT +F+LP+ 
Sbjct: 7   MDFKSLGISENTINILKKSGITTPTPIQKESIKLIKEGKDVIAEAQTGTGKTLAFLLPIF 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      +   + LIL PTRELA Q+ +   K  ++ ++++    GG    +Q KKL+
Sbjct: 67  ENI---SLDINDIQVLILSPTRELAIQITEEAMKLKESKDVSILAAYGGKDIGSQIKKLK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH NR  + ++ ++  V+DEAD+ML MGF   ++ I       +QT
Sbjct: 124 GNIHMIIATPGRLLDHLNRKTIDLSKLKTFVLDEADQMLLMGFKNEVEAILKETSNKKQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+  +++K++  + +NP  + +     T   I            +K       + 
Sbjct: 184 LCFSATINSQVKKLAYRYTKNPVVVSIQKEEITLNNI---KQEVVETTDRKKLDALCKVL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIFC  K+ V NL  +L  +G++   +H +I Q  R +I+ +F+   IQ ++
Sbjct: 241 DEDNPFMAIIFCRTKRRVDNLEEALAIRGYNCQKLHSDIAQSKRERIMKSFRNLDIQYLI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI  V H++N+D+P   E+YIHRIGRTGRAG  G     +  ++ + +  I
Sbjct: 301 ATDVASRGLDISGVSHIYNYDLPETPEDYIHRIGRTGRAGEEGYTCAFIDPKNERMLSEI 360

Query: 361 EKLIEKKVDWLNGDL 375
           E  IE K++    +L
Sbjct: 361 ETAIESKINRRIIEL 375


>gi|282859050|ref|ZP_06268186.1| putative ATP-dependent RNA helicase DeaD [Prevotella bivia
           JCVIHMP010]
 gi|282588218|gb|EFB93387.1| putative ATP-dependent RNA helicase DeaD [Prevotella bivia
           JCVIHMP010]
          Length = 625

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 141/385 (36%), Positives = 223/385 (57%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F +LG+  ++  A+ + G+  P P+Q + IP +L    DV  +AQTGTGKTA+F LP+L
Sbjct: 3   TFEELGVCEEIRKAIEEQGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKL 119
             ++      +     +L PTREL  Q+AD+ + +GK      +A + GG   E Q K+L
Sbjct: 63  QRIDTTTKETQAI---VLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGTSIETQIKEL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR++D  +RGK  + N+  +V+DEAD ML+MGF   I  I S VP  R 
Sbjct: 120 KRGVQIIVATPGRLIDLMHRGKAKLENVRNMVLDEADEMLNMGFQESITEILSGVPEDRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+++V++ +L + K I V + +  AE + H     Y   +K   L  + L
Sbjct: 180 TLLFSATMSREVERVAKGYLHDYKEIVVGSRNEGAENVNH---IYYMVNAKDKYLALKRL 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIFC  K     +   L K G++  A+HG++ Q+ R   +  F+    Q++
Sbjct: 237 VDFYPKIYAIIFCRTKLETQEVADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHLTQIL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ ++ HV N+ +P+  ENY HR GRTGRAG+ G + +++   +   +  
Sbjct: 297 VATDVAARGLDVTELTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKYKVRN 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE++I K  ++++G L S     +K
Sbjct: 357 IERVISK--EFIDGTLPSAEEICKK 379


>gi|145632266|ref|ZP_01788001.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655]
 gi|144987173|gb|EDJ93703.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655]
          Length = 415

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 127/379 (33%), Positives = 196/379 (51%), Gaps = 4/379 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDLSLHPIVRDALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTIAFLTATFHH 70

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 71  LLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P  + 
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVISLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPVPQS 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L    + T   +     F       E        +T        +   ++    L   L
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMND-PEYIEIEPEQKTGHCIKEELFYPSNQDKMALLLTL 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G + ++
Sbjct: 250 MEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDIL 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ A
Sbjct: 310 VATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPA 369

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+ I   +     +  +L
Sbjct: 370 IEEYIGHSIPVSQYETEAL 388


>gi|326504546|dbj|BAJ91105.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326508600|dbj|BAJ95822.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 456

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 126/411 (30%), Positives = 217/411 (52%), Gaps = 11/411 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+  ++V A    G+ +PT IQ   IP  LQ  DV G+ QTG+GKT +F LP++ 
Sbjct: 27  TFAELGICRELVEACDAMGWKQPTKIQAGAIPHALQGRDVIGLGQTGSGKTGAFALPIIQ 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L + R         ++ PTRELA Q+A+ FE  G    L  ++L+GG+    Q   + +
Sbjct: 87  ALLEHRQPFF---ACVMSPTRELAIQIAEQFEALGSGIGLVCSVLVGGVDRMQQVLSIAK 143

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +    +     +  ++ LV+DEAD++L++ F   + +I   +P  R+T
Sbjct: 144 RPHIVVGTPGRLLDHLKDTKGFSLTKVKYLVLDEADKLLNLEFKESLDDILKEIPKERRT 203

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+    L+NP ++EV++  ST +T++  +    A Y     +      
Sbjct: 204 YLFSATMTKKVSKLQRACLRNPVKVEVSSKYSTVDTLKQEWYFVPADYKDCYLVHVLNEL 263

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +    IF    ++   L  +L   GF   +I G + Q  R+  L+ FK     +++
Sbjct: 264 QGSMIM---IFVRTCESTRLLALTLRNLGFKALSISGQMSQDKRLGALNKFKAKDFNILI 320

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A+RGLDI  V  V N+D+P  +++Y+HR+GRT RAG+ G A + V + + +    I
Sbjct: 321 CTDVASRGLDIQGVDVVMNYDIPMNSKDYVHRVGRTARAGQSGYAVSFVNQYEAEWFKLI 380

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           E+L+ +++     D+  +    E I  ++     K     ++  G  +R+K
Sbjct: 381 EQLLGRQIPDRKVDMDEILILREHISDSKRIALTKL----KEDGGHKKRRK 427


>gi|308474530|ref|XP_003099486.1| CRE-CGH-1 protein [Caenorhabditis remanei]
 gi|308266675|gb|EFP10628.1| CRE-CGH-1 protein [Caenorhabditis remanei]
          Length = 429

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 112/382 (29%), Positives = 188/382 (49%), Gaps = 10/382 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  L   ++  + + G+ KP+PIQ  +I + L   D+   A+ GTGKT ++ +P++
Sbjct: 42  VEFEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVI 101

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++  + +++ PTRELA Q +    +  K+  L V +  GG        +L 
Sbjct: 102 EKIQPA---LKAIQAMVIVPTRELALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLN 158

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGRILD   +G   M+N + LV+DEAD++L   F   +  + + +P  RQ 
Sbjct: 159 GTVHLVIATPGRILDLMEKGVAKMDNCKTLVLDEADKLLSQDFQGILDRLINFLPKERQI 218

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L+SAT    +      F+Q               T+            K+       L 
Sbjct: 219 MLYSATFPQTVTS----FMQKHMHKPYEINLMEELTLLGVTQYYAFVQEKQKVHCLNTLF 274

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F++G  + +V
Sbjct: 275 RKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLV 334

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  I
Sbjct: 335 CSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRHTLRRI 394

Query: 361 EKLIEKKVDWLNGDLSSLNPPL 382
           E+ +  +++ +     +++P L
Sbjct: 395 EQELRTRIEPIP---KTVDPKL 413


>gi|262373548|ref|ZP_06066826.1| DEAD/DEAH box helicase [Acinetobacter junii SH205]
 gi|262311301|gb|EEY92387.1| DEAD/DEAH box helicase [Acinetobacter junii SH205]
          Length = 642

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 132/392 (33%), Positives = 215/392 (54%), Gaps = 11/392 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            FA+  L   +  A+   G+  PTP+Q + IP  L+  D+   +QTG+GKTA+F+LP   
Sbjct: 4   TFAEFSLHETLQQALEGLGFTSPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLN 63

Query: 59  ------MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                      ++    +  P  L+L PTRELA QV+ +   + ++        I G   
Sbjct: 64  ALTGQETFVPFKERMKAITQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             +  +  +GA V++ TPGR+LD  NR +L ++ +E L++DEADRMLD+GF   ++ I  
Sbjct: 124 FGKQIQQLKGAQVIVATPGRLLDLVNRRQLKLDKVESLIVDEADRMLDLGFSEDLEAIGE 183

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L     QTL+FSAT  D + +++E  + +P+RI + T  ST   +      T     K  
Sbjct: 184 LAANRNQTLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTDVTQTLHWTDGFEHK-- 241

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L     S +++   ++F + +++   L   L + G SV A+HG + Q  R + L + +
Sbjct: 242 KKLLTHWLSDESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIR 301

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL    
Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGQAITLATYR 361

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
           +   I A+E  ++ +++    +    +PP  +
Sbjct: 362 ERGKIRALEDYLDARLNVSEIEGLEPSPPPAR 393


>gi|152992308|ref|YP_001358029.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
 gi|151424169|dbj|BAF71672.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
          Length = 447

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 137/411 (33%), Positives = 218/411 (53%), Gaps = 8/411 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA L LS  +   +   GY +PTPIQ K IP +L   +    AQTG+GKT +++LP L
Sbjct: 1   MSFASLKLSTALTELLEGEGYARPTPIQQKLIPALLDGQNAIASAQTGSGKTLAYLLPAL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +     +V    PR  IL PT+ELA Q+ +    +    +L V LL GG     + ++
Sbjct: 61  QQINPEAEKVTHHYPRLFILSPTKELAQQIYEVSRPFVNALDLNVVLLQGGGRRTVETER 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G DV+I TP R L+H     + +  I  LV+DEAD M DMGF+ Y++ I +++    
Sbjct: 121 LKKGVDVIIATPQRALEHIEAQHIDIKAIRHLVVDEADMMFDMGFVGYLEKIFTMMTERS 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++ SAT+T  + K+++ +++  KRIE++ P   A+TI            +        
Sbjct: 181 QKIIVSATITPRVIKLAKTYIKPLKRIELDPPGKIADTITQMLYPVLRSKKEALLAWL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S    +  ++F  +K+    +  SL    + V  +HG    + R K L+ F+EG  ++
Sbjct: 239 -ISSGNYEKVLLFVRKKELADGVAESLRSWDYKVGILHGERTHQERKKSLNAFREGRYRI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N+D+P+   ++IHR+GRTGRAGR G A TLV+ ++I+ + 
Sbjct: 298 LVATDIAARGLDISDLDVVINYDIPHVKHDFIHRVGRTGRAGREGIAITLVSPDEIEQLH 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKID-IAQHNHARKNNPIPQKSTGFDR 408
            ++K++  K+  +   L    P   K      H   R+      K     R
Sbjct: 358 DLQKVLGGKIKEV--ILPEYAPKEVKARGFLLHGPQRRKKSTSVKRESASR 406


>gi|84996983|ref|XP_953213.1| DEAD-box family RNA-dependent helicase [Theileria annulata strain
           Ankara]
 gi|65304209|emb|CAI76588.1| DEAD-box family RNA-dependent helicase, putative [Theileria
           annulata]
          Length = 616

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 127/383 (33%), Positives = 197/383 (51%), Gaps = 5/383 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGT---GKTASFVL 57
           + F        ++ ++  AG+ +PTPIQ++  P+ L   D+ GIA+TG    GKT +F+L
Sbjct: 188 VKFEYTSFPRYILSSIESAGFKEPTPIQVQAWPIALSGRDMIGIAETGITRSGKTLAFLL 247

Query: 58  PMLTILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           P +  +           P  L+L PTRELA Q+ +    +G++  L  ++  GG+P + Q
Sbjct: 248 PAIVHINAQALLRPGDGPIVLVLAPTRELAEQIKETALVFGRSSKLKTSVAYGGVPKKFQ 307

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG ++LI  PGR++D        +  +  LV+DEADRMLDMGF P I+ I   + 
Sbjct: 308 TIALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIR 367

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTL+FSAT   E+  +S + L +                         +  +K   L
Sbjct: 368 PDRQTLMFSATWPKEVISLSRSLLSHEVVHVNIGSLDLTTCHNIEQNVFILEEREKRLKL 427

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++LL+        +IF   KK    L   L   G+    IHG+  Q  R  +L+ FK G 
Sbjct: 428 KELLKKLMDGGKILIFSETKKGADTLTRELRLDGWPALCIHGDKKQEERTWVLNEFKTGK 487

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +M+A+D+A+RGLD+ DV +V N+D P + E+Y+HRIGRTGRAG  G ++T +  +  K
Sbjct: 488 HPIMIATDVASRGLDVRDVKYVINYDFPGQIEDYVHRIGRTGRAGMKGSSYTFLTPDKFK 547

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
               + KL+ +    +  +L  L
Sbjct: 548 SARELVKLMREANQEIPPELLKL 570


>gi|306821248|ref|ZP_07454862.1| ATP-dependent RNA helicase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550760|gb|EFM38737.1| ATP-dependent RNA helicase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 517

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 152/472 (32%), Positives = 238/472 (50%), Gaps = 34/472 (7%)

Query: 1   MDFADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M F +L  ++  ++ A+   G+   T IQ K +P+ + + DV G +QTGTGKT +F +P+
Sbjct: 1   MKFRELTDINENILKAIDAMGFEDMTQIQEKIVPVAVNKCDVIGQSQTGTGKTVAFGIPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  L+    +++     I+ PTRELA QV     +  +        L GG     Q K+L
Sbjct: 61  IQNLDFDEEKIQSV---IMTPTRELAIQVTAEINRLLRFLPTKAVALYGGEEITRQIKRL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +++ TPGR++DH  R  +    I  +V+DEAD ML MGF+  I+ I   +P    
Sbjct: 118 KDRPAIIVATPGRLMDHIRRRTVKTEYINTVVLDEADEMLSMGFVEDIEEILEQMPNRSI 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM D ++K+SE FL++P  ++V   + T ++I+  ++                 
Sbjct: 178 TMLFSATMPDRIKKISEKFLKDPLFVKVERKTLTVDSIDQKYIQIQESDKFDALCRLL-- 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIF   K+ V  L   L+ + + V  IHG++ Q  R K+L  FK+G I+++
Sbjct: 236 -DIYQPPLCIIFGRTKRRVDELISGLQLRDYKVEGIHGDMKQDRREKVLERFKKGNIRIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V HV NFD+P   E Y+HRIGRTGRAG+ G +FT V  ++++ +  
Sbjct: 295 VATDVAARGLDISGVTHVINFDLPQEIEGYVHRIGRTGRAGKSGVSFTFVHPKEMEFLQE 354

Query: 360 IEKLIEKKVDWLNG-------------------DLSSL-NPPLEKID-IAQHNHARKNN- 397
           IE   + K++                       DL  L N   EK++ IAQ    R +  
Sbjct: 355 IEHHTKSKMEKFKNPTVSQAKEAIYLRATDKIVDLMDLDNEKEEKLEKIAQSLLERYDAV 414

Query: 398 ---PIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFR 446
                  +    + +K+ Y    S  PL  S+K  K  +  + N+    G R
Sbjct: 415 DIISAALRVMTKNDKKQAYVKLTSERPLTLSKKYRKNVE--KRNNPYGDGKR 464


>gi|195438679|ref|XP_002067260.1| GK16276 [Drosophila willistoni]
 gi|194163345|gb|EDW78246.1| GK16276 [Drosophila willistoni]
          Length = 950

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 122/376 (32%), Positives = 200/376 (53%), Gaps = 11/376 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L P ++  +   G+ KPT IQ +  P+ L   D+ GIAQTG+GKT +++LP + 
Sbjct: 242 NFEEASLPPHIIDEMKRQGFTKPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIV 301

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNK 117
            +       R   P  L+L PTRELA Q+      YG           + GG     Q +
Sbjct: 302 HIGNQPPILRGEGPVALVLAPTRELAQQIQSVVRDYGHLCQPEIRHTCIFGGSSKVPQAR 361

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LERG +V+I TPGR++D        +     LV+DEADRMLDMGF P I+ I   +   
Sbjct: 362 DLERGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 421

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ- 236
           RQ +++SAT   E+Q ++ +FL +  +I + + + +A       V    +  K   +++ 
Sbjct: 422 RQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEMEKPQRMMRL 481

Query: 237 ------QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
                     + + +   IIF   K  V ++   +  +G++  +IHG+  Q  R  +L +
Sbjct: 482 LKEIVPTTNNAANNLNKIIIFVETKIKVEDILQIIRTEGYTATSIHGDKTQNERDSVLKD 541

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   +++A+D+A+RGLD+ D+ +V N+D PN +ENY+HRIGRTGR  + G A+T   
Sbjct: 542 FRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFT 601

Query: 351 KEDIKHIDAIEKLIEK 366
            ++ K    +  ++E+
Sbjct: 602 PDNAKQARELISVLEE 617


>gi|110835269|ref|YP_694128.1| DEAD-box ATP dependent DNA helicase [Alcanivorax borkumensis SK2]
 gi|110648380|emb|CAL17856.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax
           borkumensis SK2]
          Length = 450

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 127/369 (34%), Positives = 198/369 (53%), Gaps = 1/369 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L  +++ A+ +     PTP+Q   IP  L+  D+  +A+TG+GKTA+F+LPML 
Sbjct: 3   SFADLNLHERLIKALGELEITTPTPVQTAAIPAALEGRDLRVVARTGSGKTAAFLLPMLH 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +        R LIL PTRELA Q     E  G+   +   LL GG  F+ Q  K+ +
Sbjct: 63  QLLQYSRPRTDTRALILLPTRELAQQTLKQVEALGRYTFIKAELLTGGEDFKVQAAKMRK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             ++LI TPGR+++H + G LL+ ++E+LV+DE+DRMLDMGF   +  + +     RQTL
Sbjct: 123 NPEILIGTPGRLIEHLDAGNLLLQDLEMLVLDESDRMLDMGFNDDVLRLAAECRPERQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT      +   + +    R  V              + T     K    L Q L +
Sbjct: 183 LFSATTGGNAMENMISSVLRDPRSLVLDSVRDLNESVSQQIITADDV-KHKERLVQWLLA 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +T    ++F N ++    LC  L      V  +HG  DQ+ R   +   K G ++++VA
Sbjct: 242 NETYDKAVVFTNTREQADRLCGVLVASNLKVFVLHGEKDQKDRKLAMDRLKTGAVKVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ + ++  V NFD+P   + Y+HRIGRTGR G  G A +L+A  +   + +I+
Sbjct: 302 TDVAARGIHVDNLDLVINFDMPRSGDEYVHRIGRTGRVGGEGTAISLIAAHEWNLMASIQ 361

Query: 362 KLIEKKVDW 370
           + + +  ++
Sbjct: 362 RYLRQNFEY 370


>gi|315182247|gb|ADT89160.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii NCTC 11218]
          Length = 397

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 151/403 (37%), Positives = 228/403 (56%), Gaps = 7/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  AV + GY KPT IQ K IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSKLGLSEALTQAVAELGYQKPTTIQTKAIPVILQGQDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                +   R +  R LIL PTRELA QVAD   +YG++  LT   + GG+  +AQ ++L
Sbjct: 61  HKLQGRETQRKKRIRALILVPTRELAIQVADKVAQYGQHTGLTTLAMYGGVEEQAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR+LD + +  +    +EI+V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IEGVDVLVATPGRLLDMYGQRAVYFEEVEIVVLDEADRMLDMGFIDSINKIIDRLPRDAQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++ +++  + +P  I +    ++   IE   +                 
Sbjct: 181 YLLFSATLSHKVRDLAKTAVNDPFEISIAANQASKSNIEQWLITVDKDKKSALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++     +IF   K     L   LEK+G +  A H    Q  R+++L +FK G I+ M
Sbjct: 238 ITENNWDQALIFIETKHGAAKLASQLEKRGITAEAFHSGRSQAVRVQLLEDFKAGKIKYM 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ + ARG+DI ++  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 IATGVGARGIDIHELSRVVNYDLPFPADEYVHRIGRTGRANAKGEAISFVSKDNFKNLCM 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           IE  +   ++     +     P + + I+  N+  K+   PQ 
Sbjct: 358 IESRLGHLIER---RVVEGFEPKKPVPISILNYVPKSKRTPQD 397


>gi|297817434|ref|XP_002876600.1| hypothetical protein ARALYDRAFT_486601 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322438|gb|EFH52859.1| hypothetical protein ARALYDRAFT_486601 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 494

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 112/375 (29%), Positives = 185/375 (49%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L   ++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGKT +F +P+L 
Sbjct: 121 EFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLE 180

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++       + + +IL PTRELA Q +   ++  K  N+ V +  GG        +L +
Sbjct: 181 KIDPSN---NVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQ 237

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P ++ +   +P  RQ L
Sbjct: 238 PVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFL 297

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++     F     R           T+            ++       L S
Sbjct: 298 MFSATFPVTVKA----FKDRHLRKPYVINLMDQLTLMGVTQYYAFVEERQKVHCLNTLFS 353

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++   F+ G  + +V 
Sbjct: 354 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVC 413

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E+Y+HR+GR+GR G  G A  LV  ED   +   E
Sbjct: 414 TDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTE 473

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +  ++ 
Sbjct: 474 QELGTEIKPIPSNID 488


>gi|159468063|ref|XP_001692202.1| cytoplasmic DExD/H-box RNA helicase [Chlamydomonas reinhardtii]
 gi|158278388|gb|EDP04152.1| cytoplasmic DExD/H-box RNA helicase [Chlamydomonas reinhardtii]
          Length = 405

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 112/376 (29%), Positives = 193/376 (51%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGKTA+F +P++ 
Sbjct: 32  EFEDYFLKRELLMGIFEKGFEKPSPIQEESIPIALAGRDILARAKNGTGKTAAFCIPVVE 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  R    + + L+L PTRELA Q A   ++  K  ++ V +  GG   +    +L +
Sbjct: 92  RVDPTR---PVIQALLLVPTRELALQTAQVCKELSKYLSIEVMVTTGGTSLKDDIMRLYQ 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++D  ++G   +N   +LV+DEAD++L   F P ++ +   +P  RQ +
Sbjct: 149 TTHIVVATPGRVVDLASKGVARLNECRMLVMDEADKLLSPEFQPVVEQLIGYLPDDRQIM 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    ++     F +   R           T++           K+       L S
Sbjct: 209 LYSATFPVTVKA----FKEKFLRKPYIINLMEELTLKGVTQFYAFVEEKQKVHCLNTLFS 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 265 KLRINQSIIFCNSVNRVELLAKKITELGYSCYYIHAKMLQSHRNRVFHDFRNGHCRNLVS 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  +D  ++  IE
Sbjct: 325 SDLFTRGIDIQSVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYDDRINLFKIE 384

Query: 362 KLIEKKVDWLNGDLSS 377
           + +  ++  +   +  
Sbjct: 385 QELGTEIKPIPAQIEE 400


>gi|291165175|gb|ADD81192.1| vasa [Katsuwonus pelamis]
          Length = 643

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 128/388 (32%), Positives = 205/388 (52%), Gaps = 13/388 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 207 MTFDEAALCESLRKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 266

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + ++ P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 267 QQLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTAH 326

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
           Q +++ RG +V+  TPGR+LD   RGK+ +  +  LV+DEADRMLDMGF P ++      
Sbjct: 327 QIREISRGCNVVCGTPGRLLDMIGRGKVGLTKLRYLVLDEADRMLDMGFEPDMRRLVGSP 386

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++Q+++ +FL+             A +          ++SK
Sbjct: 387 GMPSKENRQTLMFSATYPEDIQRLAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSK 446

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +       L     M+  ++F   K+    +   L ++     +IHG+ +QR R + L++
Sbjct: 447 RE--QLHDLLKTTGMERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALTD 504

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDIPDV HV NFD+PN  + Y+HRIGRTGR G  G+A +   
Sbjct: 505 FRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYD 564

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSS 377
            + D +   ++  ++ K    +   L  
Sbjct: 565 PDADGQLARSLITVLSKAQQEVPSWLEE 592


>gi|110638001|ref|YP_678208.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110280682|gb|ABG58868.1| ATP-dependent RNA helicase (cold-shock DEAD-box protein A)
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 580

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 142/371 (38%), Positives = 221/371 (59%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGLSP+VV A+   GY + TPIQ KTIP+++   D+ G AQTGTGKTA+F +P +
Sbjct: 1   MLFKDLGLSPEVVEAIESIGYSEATPIQEKTIPILMTGKDLTGQAQTGTGKTAAFGIPAI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKL 119
             ++     +   ++LIL PTRELA QV    +K  K      V  + GG   E Q + L
Sbjct: 61  EHVDIS---INQTQSLILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGESIERQIRDL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGRI+DH +R  L  +++  +++DEAD ML+MGF   I+ I + +P  RQ
Sbjct: 118 KAGAHIVVGTPGRIIDHLDRRTLNASHLSQIILDEADEMLNMGFREDIELILTRLPEERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT+   +  +++ F  NP+ I++     T  T+E  +         +        
Sbjct: 178 TVLFSATLAPPILALAKRFQNNPEIIKIERKELTISTVEQFYYLVKNSQKTEIVTQI--- 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              + ++  +IFCN K+ V  +   L+  G +  ++HG+  QR R +++S F++G   ++
Sbjct: 235 IDLNNLQLMLIFCNTKRKVEEVTDELKAYGHNPISLHGDKTQRDRTEVMSKFRKGLANIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V  V N+DVP   ENY+HRIGRTGRAG+ GK+FTLV  ++   +  
Sbjct: 295 VATDVAARGIDVTGVDAVINYDVPLDIENYVHRIGRTGRAGQLGKSFTLVTSDEKYKLRD 354

Query: 360 IEKLIEKKVDW 370
           IE+  +  ++ 
Sbjct: 355 IERYTKATIEK 365


>gi|255534707|ref|YP_003095078.1| ATP-dependent RNA helicase [Flavobacteriaceae bacterium 3519-10]
 gi|255340903|gb|ACU07016.1| ATP-dependent RNA helicase [Flavobacteriaceae bacterium 3519-10]
          Length = 450

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 129/395 (32%), Positives = 200/395 (50%), Gaps = 6/395 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FAD  L  K++  + D+   +PTPIQ KTI  +L   DV GIAQTGTGKT +++LP+L
Sbjct: 4   ITFADFELPEKILDVLADSNLFEPTPIQEKTIKPILSGRDVMGIAQTGTGKTLAYLLPVL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +    +   P  LIL PTREL  QV++  +   ++    V  + GG+  + Q     
Sbjct: 64  KTWKYN--KNGNPTVLILVPTRELVVQVSEIVKNLTQHLTARVLGIYGGVNIKTQKLLFN 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGRI+D      + +  ++ L++DE D ML++GF   +  I +++   RQ 
Sbjct: 122 DGCDILVGTPGRIMDLAIDNAISLKEVQKLIVDEFDEMLNLGFKMQLTTIFTMMKEKRQN 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+ +  V   +  +P  I +    +  E I          ++K   L   L  
Sbjct: 182 ILFSATMTEAVDAVLYEYFADPVEISLAKSGTPLEKITQIGYKVENFHTKINLLEHLLKS 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  K  I   N++          E        IH N  Q  R+  + +F+   ++ ++
Sbjct: 242 DTDFSKVLIFCNNKRNADYLFTKIDEIFPDQFDVIHSNKSQNYRLNAMRSFENKEVRGLI 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+ ARGLDI D+ HV NF++P   E YIHRIGRTGRA + G A + V K++   +  I
Sbjct: 302 TTDIMARGLDISDITHVINFEIPEVPEQYIHRIGRTGRADKDGIAVSFVTKKEETSLLDI 361

Query: 361 EKLIEKK--VDWLNGDLS--SLNPPLEKIDIAQHN 391
           E L++K   +     ++    L    EK +I   N
Sbjct: 362 EILMDKAVLIKDFPAEVKINPLKIASEKDEIIMKN 396


>gi|194216191|ref|XP_001497891.2| PREDICTED: similar to mCG15236 [Equus caballus]
          Length = 563

 Score =  157 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 128/378 (33%), Positives = 205/378 (54%), Gaps = 2/378 (0%)

Query: 2   DFAD-LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F D     P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT S+++P  
Sbjct: 159 QFEDAFQCYPEVMENIQKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLSYLMPGF 218

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+      R    +++       A   +          L    + GG     Q + L 
Sbjct: 219 IHLDSQPIEKRNGPGMLVLTPTRELALQVEAECSKYSYKGLKSVCIYGGGDRNGQIQDLT 278

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D++I TPGR+ D      + + ++  LV+DEAD+MLDMGF P I  I   V   RQT
Sbjct: 279 KGVDIIIATPGRLNDLQMNNFVNLKSVTYLVLDEADKMLDMGFEPQIMKILLDVRPDRQT 338

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT    ++++++++L+ P  + V T    A +     +    +  K  + +Q  L+
Sbjct: 339 VMTSATWPYSVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIVTTEEEK-RSHIQTFLE 397

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S       I+F ++K    +L   L  Q  SV ++HGN +Q  R + L NFK G +++++
Sbjct: 398 SMSPKDKVIVFVSRKAVADHLSSDLILQHISVESLHGNREQSDRERALENFKTGKVRILI 457

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLD+ DV HV+N+D P   E Y+HR+GRTGRAGR G + TL+ + D +  + +
Sbjct: 458 ATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLLTRNDWRVANEL 517

Query: 361 EKLIEKKVDWLNGDLSSL 378
             ++E+    +  DL S+
Sbjct: 518 INILERANQSIPEDLVSM 535


>gi|327541188|gb|EGF27732.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
           baltica WH47]
          Length = 556

 Score =  157 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 148/385 (38%), Positives = 212/385 (55%), Gaps = 16/385 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL+  ++  +  AGY  PTPIQ ++IP +L  +DV G AQTGTGKTA+F LP+L 
Sbjct: 74  KFEDLGLTGPLLQGLEQAGYETPTPIQAQSIPEILDGNDVLGAAQTGTGKTAAFALPILQ 133

Query: 62  ILEKGRARVRMPRTL-------------ILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
           I+ +     R P                +L PTREL+AQ+  NF  YGK   L   ++ G
Sbjct: 134 IMWEDDQERREPSKRRGGRPGRRPIRTLVLSPTRELSAQIEANFRIYGKKTRLRSTVIFG 193

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G+    Q ++L+ G D L+ TPGR+LD  N+G + + ++EILV+DEAD MLDMGF+P ++
Sbjct: 194 GVNQNPQVRELQSGVDTLVATPGRLLDLVNQGFIDLKDVEILVLDEADHMLDMGFLPDVK 253

Query: 169 NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
            I   +P  RQ LLFSATM   ++K+++  L +P  I++     T E IE          
Sbjct: 254 RILKFLPRDRQNLLFSATMPGPIRKLADEILVDPVTIQIAPQKPTVERIEQSICFVAQAD 313

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
                 L           + ++F   K     +   L K G    AIHGN  Q +R++ L
Sbjct: 314 K---PRLLNHFIETKATGSTLVFTRTKHGADAVARRLVKAGVKAAAIHGNKTQANRVRTL 370

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           + FK   + ++VA+D+AARG+DI  +  V N+D PN  E Y+HRIGRTGRAGR G+    
Sbjct: 371 NKFKNDELDVLVATDVAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRAGREGETVMF 430

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNG 373
               + K   AIE+ I+ ++    G
Sbjct: 431 CGGHETKFFIAIEREIKLQIPVATG 455


>gi|312374635|gb|EFR22148.1| hypothetical protein AND_15703 [Anopheles darlingi]
          Length = 715

 Score =  157 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 121/381 (31%), Positives = 203/381 (53%), Gaps = 6/381 (1%)

Query: 2   DFAD-LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            FA   G  P ++  +   G+ KP+PIQ +  P++L   D+ GIAQTGTGKT +F+LP  
Sbjct: 290 TFAQAFGNYPDLMEELRKQGFTKPSPIQSQGWPVLLLGEDMIGIAQTGTGKTLAFLLPAF 349

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                    R+    P  L+L PT    A   +      +  ++    L GG    AQ  
Sbjct: 350 IHIEGQSTPRSERGGPNVLVLAPT-RELALQIEKEVSKYQFRDIKAVCLYGGGDRRAQMN 408

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +  G +++I TPGR+ D    G + +++I  LV+DEADRMLDMGF P I+ +   +   
Sbjct: 409 VVRSGVEIIIATPGRLNDLVQEGVVNVSSITYLVLDEADRMLDMGFEPQIRKVLLDIRPD 468

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++ SAT  D +++++++++ +P ++ V T    A       +    +  K   ++ +
Sbjct: 469 RQTVMTSATWPDGVRRLAQSYMHDPIQVYVGTLDLAAVHTVTQHIECLDEEDKYHRIM-K 527

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            ++  +     IIFC +K    +L            +IHGN +Q  R + L + K+GT++
Sbjct: 528 FVKQMEPKDKVIIFCGKKTRADDLSSEFVLNDIGCQSIHGNREQADREQALEDIKKGTVR 587

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + + V + D    
Sbjct: 588 ILIATDVASRGLDIEDITHVVNYDFPRNIEEYVHRVGRTGRAGRTGTSLSFVTRSDWAVA 647

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K++E+    +  ++  +
Sbjct: 648 AELIKILEEAQQEVPDEIRDM 668


>gi|284038208|ref|YP_003388138.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
 gi|283817501|gb|ADB39339.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
          Length = 380

 Score =  157 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 144/374 (38%), Positives = 216/374 (57%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F++LGLS  ++ A+    Y KP PIQ + IP +LQ  D+ GIA+TG+GKTASFVLP+ 
Sbjct: 1   MPFSELGLSKPLIKAIASQHYPKPYPIQQEAIPAILQGKDILGIAKTGSGKTASFVLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKK 118
                K  AR R  + L L PTRELA QVA+ F+ +  N       + + G         
Sbjct: 61  ELFQRKSVARNRYIKALALVPTRELAVQVAEVFQTFSANLPRKVKTVAVFGGVSINPQMM 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             R A++++ TPGR+LD      L + +++ILV+DEAD+MLD+GF   ++ I   +P  R
Sbjct: 121 ALRDAEIVVATPGRLLDLMASNALQLTDVDILVLDEADKMLDLGFEEEMERIFDRLPRHR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT+ D ++ +++N L+NP +IEV       + I       Y   +++   L + 
Sbjct: 181 QTILFSATLGDAIEDINKNLLRNPVKIEVVEEEQNLDLI---KQTAYRVDAERKGPLLRY 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +  MK  ++F +  +   N+   L K G    AIH    Q +R   L+ FK G + +
Sbjct: 238 LIKEGKMKQVLVFVSSTRTADNVVVKLNKNGIHAAAIHSGKTQGARTDALTKFKGGHLTV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DL +RG+DI  + HV NF++P   ++YIHRIGRTGRA   G+A +L+  ED  H  
Sbjct: 298 LVATDLISRGIDIQLLPHVINFELPRSPKDYIHRIGRTGRAEAEGEAISLICPEDEHHFK 357

Query: 359 AIEKLIEKKVDWLN 372
            I+K + K+V+ L 
Sbjct: 358 IIQKKMGKRVEILE 371


>gi|58039465|ref|YP_191429.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58001879|gb|AAW60773.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 432

 Score =  157 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 155/369 (42%), Positives = 226/369 (61%), Gaps = 5/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L+P ++ A+ +AGYVKPTPIQ ++IPL+L+  D+ G+AQTGTGKTASF LP+L  
Sbjct: 9   FADLALAPTLLRALDEAGYVKPTPIQAQSIPLLLEGRDLLGLAQTGTGKTASFALPLLHR 68

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                  A     R L+L PTREL +Q+AD FE + ++  + V  + GG+    Q K LE
Sbjct: 69  LAATPRPAPKNGARVLVLAPTRELVSQIADGFESFSRHQPVRVTTIFGGVSQVHQVKALE 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+++  PGR+LD   +G   ++ +E LV+DEAD+MLDMGF   I+ I + +P  R T
Sbjct: 129 EGVDIIVAAPGRLLDLIEQGLCDLSQLETLVLDEADQMLDMGFAKPIERIVATLPEDRHT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +  + E+ L+NP ++E+  PSST + I    +   A   K          
Sbjct: 189 VLFSATMPKSIAALVESLLRNPAKVEIAPPSSTVDRIAQSVMFLNASDKKAA---LLAQL 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   ++F  QK    ++C  L + G +  A+HGN  Q  R + L+ F+EG +Q++V
Sbjct: 246 RTPGIGQAVVFTLQKNIANDVCTFLTESGITAEALHGNRSQGQRERALNAFREGDVQVLV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV N D+P+  E+Y+HRIGRTGRAGR G A TL   E    + A+
Sbjct: 306 ATDIAARGIDVDTVTHVINHDLPSLPESYVHRIGRTGRAGRSGFAITLCDAEQRAWLHAV 365

Query: 361 EKLIEKKVD 369
           E+ I + +D
Sbjct: 366 EREIGRTLD 374


>gi|326505420|dbj|BAJ95381.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326522769|dbj|BAJ88430.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 524

 Score =  157 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 116/375 (30%), Positives = 192/375 (51%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 151 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 210

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + +IL PTRELA Q +   ++ GK  N+ V +  GG   +    +L +
Sbjct: 211 KIDP---EKNAIQVVILVPTRELALQTSQVCKELGKYLNIEVMVSTGGTSLKDDIMRLYQ 267

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L  TPGRILD   +G  ++N   +L++DEAD++L   F P ++ +   +P +RQ L
Sbjct: 268 PVHLLAGTPGRILDLTKKGICMLNECSMLIMDEADKLLAPEFQPSVEQLIRYLPASRQLL 327

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++   + +L  P  I          T++           ++       L S
Sbjct: 328 LFSATFPVTVKDFKQKYLPRPYVI----NLMDELTLKGITQYYAFVEERQKVHCLNTLFS 383

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 384 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 443

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 444 TDLFTRGIDIQAVNVVINFDFPKTAETYLHRVGRSGRFGHLGLAVNLITYEDRFNMYRIE 503

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 504 QELGTEIKTIPPQID 518


>gi|189205104|ref|XP_001938887.1| ATP-dependent rRNA helicase rrp3 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187985986|gb|EDU51474.1| ATP-dependent rRNA helicase rrp3 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 517

 Score =  157 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 133/400 (33%), Positives = 211/400 (52%), Gaps = 7/400 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+  ++  A  +  +  PTPIQ + IPL L+  DV G+A+TG+GKTA+FVLP+L 
Sbjct: 88  TFADLGVREELCDACENLKFKNPTPIQTQAIPLALEGRDVIGLAETGSGKTAAFVLPILQ 147

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    LIL PTRELA Q+A   +  G   N+  A L+GG+    Q   L +
Sbjct: 148 SL---LEKPQPLFGLILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSK 204

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +    N     + +++ +V+DEADR+LD+ F P +  I  ++P   + 
Sbjct: 205 RPHIVVATPGRLLDHLENTKGFSLKHLKYMVLDEADRLLDLDFGPVLDKILKVLPREGRH 264

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSATM+ +++ +    LQNP R+ +++ S    +      A      K        L
Sbjct: 265 TYLFSATMSSKVESLQRAALQNPVRVSISSSSHQVVSTLLQRYAFIPHKYKDL--YLVHL 322

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +     IIF         +   L   GF    +HG + Q +R+  L+ FK  +  ++
Sbjct: 323 LNDNIGHPTIIFTRTVNETQRIAVLLRALGFGAIPLHGQLSQSARLGALNKFKSKSRDIL 382

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  + NFD+P+ ++ Y+HR+GRT RAG+ GKA + V + D++    
Sbjct: 383 VATDVAARGLDIPAVDLIVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQYDLEIWLR 442

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           IE  + KK+     D       ++++  AQ    R+   I
Sbjct: 443 IEHALGKKIPEQTFDKDEAMVYMDRVSEAQRVAIREMKDI 482


>gi|301601272|dbj|BAJ12168.1| DEAD box protein [Rana rugosa]
          Length = 736

 Score =  157 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 136/426 (31%), Positives = 213/426 (50%), Gaps = 17/426 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   V  AGYVK TPIQ  +IP+++   D+   AQTG+GKTA+F+LP+L
Sbjct: 298 LTFEEANLCDTLAKNVCKAGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPIL 357

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L            ++ P  +I+ PTREL  Q+  +  K+     +   ++ GG     
Sbjct: 358 AHLMMKGVQSSAFQALKEPEAIIVAPTRELINQIYLDARKFAYGTCVRPVVIYGGTQTFH 417

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             K++  G ++L  TPGR+LD   + K+ +  +  LV+DEADRMLDMGF   I+N+    
Sbjct: 418 SLKQISEGCNILCATPGRLLDIIRKEKIGLTKLRFLVLDEADRMLDMGFREDIENLLRSP 477

Query: 175 PFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT    +Q +++  L+      V      A +     V    ++ K
Sbjct: 478 GMPSKEERQTLMFSATFPSSIQSLAKXMLKPDYLFVVVGQVGGACSDVQQEVIEVEEFGK 537

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K  L++  +      +  ++F   KK    +   L ++     +IHG+ +QR R   L +
Sbjct: 538 KDKLME--ILQVIGSERTMVFVKTKKKADFIATFLCQEKVPSTSIHGDREQRERETALRD 595

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 596 FRTGQCPVIVATSVAARGLDIENVSHVINFDIPDDIDEYVHRIGRTGRCGNTGRAISFFD 655

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
               K  D  +++    V  L+     +   LE +  + H     +NP   K    D RK
Sbjct: 656 ----KRGDDEQRIARSLVKVLSDAHQDVPAWLEDVAFSAHGMP-AHNPRSNKFASTDDRK 710

Query: 411 KNYSSQ 416
           +  S Q
Sbjct: 711 RGDSRQ 716


>gi|291222373|ref|XP_002731189.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 670

 Score =  157 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 130/385 (33%), Positives = 203/385 (52%), Gaps = 3/385 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +      ++  V    + +PT IQ +  P+ L   DV GIAQTG+GKT +++LP +  
Sbjct: 122 FGECSFPDYILATVKRNNFKEPTAIQAQGWPMALTGRDVVGIAQTGSGKTIAYMLPAIVH 181

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QVA     +GK+  +    + GG P  +Q + LE
Sbjct: 182 INHQPFLDRGDGPICLVLCPTRELAQQVAHVAVDFGKSSRIKNTCVYGGAPKGSQIRDLE 241

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR+LD    GK  +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 242 RGVEICIATPGRLLDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 301

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLL 239
           L++SAT   E++ ++E+FL++  ++ +   S +A       V    ++ K    +     
Sbjct: 302 LMWSATWPKEVRGLAEDFLKDYLQVNIGALSLSANHNILQIVDVCQEHEKDDKLIRLLEE 361

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+     +IF   KK   +L   + + G+    IHG+  Q  R  +LS F+ G   ++
Sbjct: 362 IMQENENKTLIFVETKKRTDDLTRRMRRDGWPAMCIHGDKSQPERDWVLSEFRAGNAPIL 421

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ D+  V NFD P+  E+YIHRIGRT R+ R G A+T     ++K    
Sbjct: 422 LATDVASRGLDVTDIKFVINFDYPSSTEDYIHRIGRTARSERTGTAYTFFTAGNMKQAPE 481

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           +  ++ +    +N  L ++     K
Sbjct: 482 LIDVLREANQVINPKLINMAEAARK 506


>gi|170046412|ref|XP_001850760.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167869183|gb|EDS32566.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 438

 Score =  157 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 137/405 (33%), Positives = 221/405 (54%), Gaps = 8/405 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +GL   +  A     +  P+ IQ + IPL LQ  DV G+A+TG+GKT +F LP+L  L +
Sbjct: 1   MGLIDTLCEACKALKWKAPSKIQREAIPLALQGKDVIGLAETGSGKTGAFALPILQALLE 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
              R       IL PTRELA Q+++ FE  G +  +   +++GG+   +Q  +L R   +
Sbjct: 61  NPQRYFAV---ILTPTRELAYQISEQFEALGASIGVKCCVIVGGMDMVSQALQLARKPHI 117

Query: 126 LICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +I TPGR++DH    K      ++ LV+DEADR+L++ F   +  I  ++P  R+T LFS
Sbjct: 118 IIATPGRLVDHLENTKGFNLKAVKYLVMDEADRILNLDFEVELDKILKVLPRERRTFLFS 177

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           ATMT +++K+    L++P ++EV++   T E +           +K   +    + ++  
Sbjct: 178 ATMTKKVKKLERASLKDPVKVEVSSKYQTVEKLLQ---YYVFIPAKFKDVYLVHILNELA 234

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK    Q+++++D+
Sbjct: 235 GNSFMIFCSTCNNTVRTALMLRALGLAAVPLHGQMSQNKRLASLNKFKGKDRQILISTDV 294

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    IE L+
Sbjct: 295 ASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRAGKAVTFVTQYDVELYQRIEHLL 354

Query: 365 EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            KK+     +   +    E++  AQ   AR      ++  G  R+
Sbjct: 355 GKKLPEFKCEEDEVMALQERVGEAQRT-ARLELKDIEERKGMKRK 398


>gi|139438943|ref|ZP_01772403.1| Hypothetical protein COLAER_01409 [Collinsella aerofaciens ATCC
           25986]
 gi|133775654|gb|EBA39474.1| Hypothetical protein COLAER_01409 [Collinsella aerofaciens ATCC
           25986]
          Length = 749

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 151/402 (37%), Positives = 226/402 (56%), Gaps = 26/402 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS +++ A+ + GY  PTP+Q  +IP+VL+  D+   AQTGTGKTA+F+LP +  
Sbjct: 48  FDELGLSDEMLRAIENLGYTAPTPVQAGSIPVVLEGRDLLAAAQTGTGKTAAFLLPTMNN 107

Query: 63  LEKGRARVRM---------------------PRTLILEPTRELAAQVADNFEKYGKNYNL 101
           LE       +                     P  L++ PTRELA Q+ +   K       
Sbjct: 108 LEHIAPPKPVRERGGRNRRRGAKKPEGNGRGPVMLVITPTRELAQQIDEVAGKIADVTGH 167

Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
               ++GG+ ++ Q   L+ G D+L+ TPGR++D   +G   ++ +++LV+DEADRMLDM
Sbjct: 168 VAVTVVGGVSYKPQTAALKYGCDILVATPGRLVDLIEQGACHLDEVKVLVLDEADRMLDM 227

Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
           GF+P ++ I    P  RQTLLFSAT+ +E      + + +P R+E+   +STA+T++   
Sbjct: 228 GFLPAVRRIVRETPAERQTLLFSATLDEEAVGEITDLVSDPARVEIAPATSTADTVDQFV 287

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
                +              ++  +  I+F   K    + C  LE++G    AIHGN  Q
Sbjct: 288 FPVSIEAKNNL---LPEFLKKEGPERTIVFMRTKHRADSCCRRLERKGIKAAAIHGNRSQ 344

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
             R + LS F++GT+ ++VA+D+ ARG+DI DV +V NFDVP    +YIHRIGRTGRAG 
Sbjct: 345 AQRERALSAFRDGTVDVLVATDVLARGIDISDVRYVVNFDVPAEPTDYIHRIGRTGRAGE 404

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN-GDLS-SLNPP 381
            G A T V ++D+     IEKL++K  D  + GDL    NPP
Sbjct: 405 LGWAITFVTEQDVDEFYEIEKLMDKTADIYDAGDLHVGPNPP 446


>gi|149181312|ref|ZP_01859810.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. SG-1]
 gi|148851037|gb|EDL65189.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. SG-1]
          Length = 481

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 138/372 (37%), Positives = 215/372 (57%), Gaps = 6/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  +S ++  A+    Y  PT +Q K IP  L+  D+   AQTG+GKTA+F +P+  
Sbjct: 5   SFADYHVSEEIQRALAVLKYETPTEVQNKVIPSALENQDLVVKAQTGSGKTAAFGIPVSD 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++E    +   P+ LIL PTRELA QV ++    G+   +    + G  PF  Q  +L++
Sbjct: 65  MIEWEEKK---PQALILTPTRELAVQVREDITNIGRFKRIKAVAVYGKEPFSKQKDELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR++DH  R  L +N I+ L+IDEAD ML+ GFI  ++ I   +P  R T+
Sbjct: 122 KTHVVVGTPGRVMDHIERETLDLNQIKYLIIDEADEMLNRGFIDEVEAIIKELPSNRVTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +++ +   ++ NP +IE+ +   TA+TIEH   +      ++   L + +  
Sbjct: 182 VFSATLPKDVENLCHKYMNNPLQIEIESTGVTADTIEH---SLIEVREEEKISLLKDITV 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + +IFC  K+NV  +   LEK G+    +HG ++Q  R  ++  FK G  + +VA
Sbjct: 239 VENPDSCLIFCRTKENVDTVYSELEKAGYPCERLHGGLEQEDRFSVMEGFKLGNFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI +V  V N+DVP   E+Y+HR GRTGRAG  GKA TL    + K I AIE
Sbjct: 299 TDVAARGIDIDNVTLVINYDVPMEKESYVHRTGRTGRAGNKGKAITLSTPYEGKFIKAIE 358

Query: 362 KLIEKKVDWLNG 373
           + I  ++  +  
Sbjct: 359 RYIGFELPAVEA 370


>gi|2500518|sp|Q40465|IF411_TOBAC RecName: Full=Eukaryotic initiation factor 4A-11; Short=eIF-4A-11;
           AltName: Full=ATP-dependent RNA helicase eIF4A-11
 gi|485987|emb|CAA55737.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 194/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+         + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 101 QLDYSLVE---CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P + ENY+HRIG +GR GR G +   V K+D + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGHSGRFGRKGVSINFVTKDDERMLFDIQ 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     ++ L  +++ L
Sbjct: 396 KFYNVVIEELPANVADL 412


>gi|114563324|ref|YP_750837.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114334617|gb|ABI71999.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 439

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 157/435 (36%), Positives = 237/435 (54%), Gaps = 10/435 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F+ LGL   +V A+ + GY +PTPIQ +TIP++L+  ++   AQTGTGKTASFVLP+ 
Sbjct: 1   MPFSTLGLRDTIVNALHEVGYSQPTPIQQQTIPVILKGKNLLAAAQTGTGKTASFVLPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +    R +  R LIL PTRELA QV  N  +Y K+  LT   + GG+  + Q + L
Sbjct: 61  ERLADTEIQRAKRIRALILTPTRELAVQVHANVVQYAKHLPLTSIAIYGGVDEKPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +  + +E+LV+DEADRMLDMGFI  I  I   +P  RQ
Sbjct: 121 IDGVDILVATPGRLLDLYTQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIDKLPSERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT++++++ ++       KR    +  +  ++              K + L   L
Sbjct: 181 SLLFSATLSNQVRALA---KTAIKRPVEISVIADRDSAPKIEQWLTTVDKDKKSALLSHL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     +IF   K+    L   LEK+  +   IH    Q  R +IL++FK G I+ +
Sbjct: 238 IKTEEWNQALIFIETKQGAAKLVSQLEKRDIAAECIHSGRSQPVREQILADFKSGNIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI D+  V N+D+P  A++YIHRIGRTGRAG  G A + V+ +D K++  
Sbjct: 298 VATGIAARGIDIDDLSRVVNYDLPYPADDYIHRIGRTGRAGAAGVAISFVSNDDFKNLCM 357

Query: 360 IE----KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           IE     LIE+K   + G   S   P+  ++    N   K+     + T    + K  S+
Sbjct: 358 IESRLGHLIERK--EIAGFEPSKPIPISVLNFIPKNRQHKSTSATDRPTLSLGKSKTASA 415

Query: 416 QKSHIPLKESEKISK 430
                   ++    K
Sbjct: 416 DFRKTKPSKASTTPK 430


>gi|24374367|ref|NP_718410.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24348927|gb|AAN55854.1|AE015722_4 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 449

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 135/448 (30%), Positives = 211/448 (47%), Gaps = 11/448 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F D  L  +++ ++   G   PT IQ + +P+ L   D+   ++TG+GKT +F+LP +
Sbjct: 1   MQFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++       R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRVISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +    ++ TPGRI DH  +  L +N +E+L++DEADRMLD+GF P ++ I       R+
Sbjct: 121 AKEPHFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +            + V   ++ AE  +         +      L   L
Sbjct: 181 QTLMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCDHLDHKEALLSRL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S ++ K  IIF   + +   L   L  QGF+  A+ G + Q +R +I+  F  G  Q++
Sbjct: 241 LSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D      
Sbjct: 301 VTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDSFKK 360

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKID---IAQHNHARKNNPIPQKSTGFDRRKK 411
           ++  + K  +      L    + L    + +    + + N   K+ P P        R K
Sbjct: 361 VQLFLRKTFEISVIKGLEAKFTGLKDKPKSVATKGVVKANTKGKSKPKPNVVKAAPSRDK 420

Query: 412 NYSSQ--KSHIPLKESEKISKLQQDIQE 437
            + +       P+++  K   LQ+   E
Sbjct: 421 RFITGVDVGDAPMRKKPKAQLLQESDDE 448


>gi|242280284|ref|YP_002992413.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
 gi|242123178|gb|ACS80874.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
          Length = 400

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 138/418 (33%), Positives = 216/418 (51%), Gaps = 19/418 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F       +++  +  AGY  PTP+Q+K IP VLQ  DV G+AQTGTGKTA+FVLP+L
Sbjct: 1   MSFDQFKFDMRLISGIRSAGYEVPTPVQLKAIPAVLQGRDVMGLAQTGTGKTAAFVLPVL 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L    A  R P  + +L PTRELA Q  + F + G+   +  A + GG     Q K++
Sbjct: 61  QRLLDEEAEKRGPVKVLVLSPTRELALQTHETFIELGRQTGIRSAAVYGGAGIGKQAKEV 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   +       +         L     + ++DEADRMLDMGF+  ++ + + +P  RQ
Sbjct: 121 KKVTVINATPGRLLDLLEREEIDLSQVDTL-ILDEADRMLDMGFMDEVEKVLAKLPAERQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM D +  +S+N L +P+ + V    S      +                 ++L
Sbjct: 180 NLMFSATMPDAINSLSKNILHDPEVVRVAVTVSADGVSLYSCPVPVH----LKQSFLKVL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  ++F   K+    L   L K G +   +HG++ Q  R + L+ FK G   ++
Sbjct: 236 FNEIEFERVLVFVRTKRWARRLAQRLAKGGLAAADLHGDLSQSKRNRTLNGFKFGDFTVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+D  ++ HV N+D+P+  E ++HR GRTGRA   G A+T VA ED   +  
Sbjct: 296 VATDLAARGIDCSNISHVINYDMPDNVEIFVHRTGRTGRADAKGTAYTFVADEDKARLAE 355

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE+ +   ++    D  + N P  K+D +         P+P K+    R+K+N   +K
Sbjct: 356 IEESLGYGLELFYLDTFNYNAP--KLDFSA--------PVPDKNG---RKKRNTQHKK 400


>gi|255034351|ref|YP_003084972.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254947107|gb|ACT91807.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 411

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 131/414 (31%), Positives = 237/414 (57%), Gaps = 22/414 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  ++ ++  ++  AG+ KPT IQ K IP V++  DV  IAQTGTGKTA+F +P++
Sbjct: 1   MKFDDYPIAAEIKRSLEAAGFKKPTDIQFKAIPAVMKGEDVLAIAQTGTGKTAAFAIPVI 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                +K  +R    + +++ PTRELA Q+A+ F    +   +    + GG+    Q  K
Sbjct: 61  DKLHKQKSSSRSEGIKCVVMVPTRELAIQIAEVFSSISRYTKVKTFSVFGGVEQGPQIAK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE+G D+L+ TPGR+ D  ++G + ++ ++ L++DEAD MLD+GFI  IQ++   +P  R
Sbjct: 121 LEKGIDILVSTPGRMFDLVSQGHIRLDRVDTLILDEADHMLDLGFIKDIQDLIRHLPKRR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSAT+ ++++K++ + ++N  RI+++  +  A+ I+H          +      + 
Sbjct: 181 QTLFFSATIDEKIKKLAYSLVRNAIRIQISPKNPVAKNIDHSVAFVAMDDKRFF---LER 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  Q+  K  ++F   K     + ++LE+       IHG+  Q  R+  ++ FK+G +++
Sbjct: 238 VIRQNADKKILVFVRTKVRAERVFNALERMEIKSLTIHGDKQQSDRLTAMNEFKKGNVKI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D++ARG+DIP+V +V N+D+P + E+Y+HR+GRTGR  + G A +  ++E+   +D
Sbjct: 298 LIATDVSARGIDIPNVDYVINYDLPEQPESYVHRVGRTGRGMQKGIAVSFCSEEEKPLLD 357

Query: 359 AIEKLIEKKVDWLN-----------------GDLSSLNPPLEKIDIAQHNHARK 395
            I++ ++K +  +                   DL +L   +E  +  Q    +K
Sbjct: 358 EIQQYLDKPIAVVKLTAEDYAETLEFTTDTTDDLGALMREIEAFESRQKKKGKK 411


>gi|168049229|ref|XP_001777066.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671509|gb|EDQ58059.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 616

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 128/406 (31%), Positives = 214/406 (52%), Gaps = 16/406 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     ++  +   G  +PTPIQ++ +P++L   D+ GIA TG+GKT  FVLP++ 
Sbjct: 172 NFKDMRFPDPILKKLKAKGITRPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPLIM 231

Query: 62  ILEKGRARVR-----MPRTLILEPTRELAAQVADNFEKYG------KNYNLTVALLIGGI 110
           +  +   R+       P  L++ P+RELA Q  D  E++           L   L IGGI
Sbjct: 232 LALQEEVRMPLIGGEGPFGLVVCPSRELARQTYDVVEEFTAVLSEKGYPQLRSMLCIGGI 291

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + ++ G  +++ TPGR+ D   + K+ ++N + L +DEADR++D+GF   I+ +
Sbjct: 292 DMRSQLEVVKHGVHIVVATPGRLKDMLAKKKMNLDNCKYLTLDEADRLVDLGFEEDIREV 351

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 352 FDHFRGQRQTLLFSATMPKKIQN----FAKSALVKPVVVNVGRAGAANLDVIQEVEYVKQ 407

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IFC  K +V ++   L  +G    AIHG  DQ  R   +++
Sbjct: 408 EAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREFAIAS 467

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A + + 
Sbjct: 468 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATSFIN 527

Query: 351 KEDIKH-IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           K   +  +  ++ L+++    +   L++L+ P+E+ +        K
Sbjct: 528 KNQSETILLDLKHLLKEAKQRIPPVLATLDDPMEEAEELAKASGVK 573


>gi|242034037|ref|XP_002464413.1| hypothetical protein SORBIDRAFT_01g017770 [Sorghum bicolor]
 gi|241918267|gb|EER91411.1| hypothetical protein SORBIDRAFT_01g017770 [Sorghum bicolor]
          Length = 507

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 115/375 (30%), Positives = 194/375 (51%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 134 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 193

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + +IL PTRELA Q +   ++ GK  N+ V +  GG   +    +L +
Sbjct: 194 KIDP---EKTAIQVVILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQ 250

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P ++ +   +P +RQ L
Sbjct: 251 PVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLLAPEFQPSVEALIHFLPPSRQLL 310

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +++  E +L  P  I          T++           ++       L S
Sbjct: 311 MFSATFPVTVKEFKEKYLPRPYVI----NLMDELTLKGITQYYAFVEERQKVHCLNTLFS 366

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 367 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 426

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 427 TDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRYGHLGLAVNLITYEDRFNLYRIE 486

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 487 QELGTEIKTIPPQID 501


>gi|242034035|ref|XP_002464412.1| hypothetical protein SORBIDRAFT_01g017760 [Sorghum bicolor]
 gi|241918266|gb|EER91410.1| hypothetical protein SORBIDRAFT_01g017760 [Sorghum bicolor]
          Length = 507

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 115/375 (30%), Positives = 194/375 (51%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 134 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 193

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + +IL PTRELA Q +   ++ GK  N+ V +  GG   +    +L +
Sbjct: 194 KIDP---EKTAIQVVILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQ 250

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P ++ +   +P +RQ L
Sbjct: 251 PVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLLAPEFQPSVEALIHFLPPSRQLL 310

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +++  E +L  P  I          T++           ++       L S
Sbjct: 311 MFSATFPVTVKEFKEKYLPRPYVI----NLMDELTLKGITQYYAFVEERQKVHCLNTLFS 366

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 367 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 426

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 427 TDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRYGHLGLAVNLITYEDRFNLYRIE 486

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 487 QELGTEIKTIPPQID 501


>gi|319790474|ref|YP_004152107.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
           HB-1]
 gi|317114976|gb|ADU97466.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
           HB-1]
          Length = 417

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 143/399 (35%), Positives = 228/399 (57%), Gaps = 20/399 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+   L  ++  ++ + G+V+PTPIQ + IPL L+ HD+ G AQTGTGKTA+F +P++
Sbjct: 1   MEFSFSQLDERIQKSLEEMGFVEPTPIQKEAIPLALEGHDLVGQAQTGTGKTAAFGIPLV 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-L 119
           + +     R R  + ++L PTRELA QVA      GKN  ++   + GG+  E Q     
Sbjct: 61  SGI---SPRERGVKAIVLTPTRELAIQVAHELSLIGKNKGVSAFPIYGGVSIERQINALK 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +++ TPGR+ D  NRG L ++ +   V+DEAD+MLDMGFI  I+ I S  P  +Q
Sbjct: 118 RGRHQIIVGTPGRVKDLINRGVLRLDRVRYAVLDEADQMLDMGFIEDIEEILSKTPKEKQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E++++   +L+   +   N                    S+      + L
Sbjct: 178 TLLFSATMPYEIRRLIGRYLKPDYK---NVKVGKQLITPKVKQRIILVRSEDKIKALEKL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + I+F   K++  ++   L+++G +  AIHG++ QR R  ++  F+EG ++++
Sbjct: 235 LKEHEGVSTIVFVKTKRDAADIEKELQRRGINARAIHGDLSQRQREFVMRAFREGKVKVL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI DVG V N+++P   E+Y+HRIGRTGRAGR G A +LVA+ + + +  
Sbjct: 295 VATDVAARGIDIKDVGLVINYELPENPESYVHRIGRTGRAGREGLAISLVAEPEKRRLYR 354

Query: 360 I--------EKL-----IEKKVDWLNGDLSSLNPPLEKI 385
           I        E+       E K + L  D +SL P ++++
Sbjct: 355 IKGLKGVRPERFRVNTVKELKKELLEADANSLPPYVKRL 393


>gi|308502005|ref|XP_003113187.1| hypothetical protein CRE_25313 [Caenorhabditis remanei]
 gi|308265488|gb|EFP09441.1| hypothetical protein CRE_25313 [Caenorhabditis remanei]
          Length = 506

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 135/424 (31%), Positives = 220/424 (51%), Gaps = 19/424 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+S  +  A    G++KP+ IQ   +P  LQ  DV G+A+TG+GKT +F +P+L 
Sbjct: 55  TFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQ 114

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L            L+L PTRELA Q+   FE  G    L  A+++GG+   AQ   L R
Sbjct: 115 SLLDHPQAFFC---LVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALAR 171

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR++DH    K      ++ L++DEADR+L+M F   +  I  ++P  R+T
Sbjct: 172 RPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPKERRT 231

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+    L++P R+ V+T     +T+++         +K        L 
Sbjct: 232 YLFSATMTKKVSKLERASLRDPARVSVSTRY---KTVDNLKQHYIFIPNKYKETYLVYLL 288

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS----------- 289
           ++    + I+FC      + +   L + G     +HG + Q    + L            
Sbjct: 289 NEHAGNSAIVFCATCATAMQIAVMLRQLGMQAVPLHGQMSQVRFERPLQVGSLEKRLGSL 348

Query: 290 -NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             FK     ++V +D+AARGLDIP V  V N+D+P+++++Y+HR+GRT RAGR G A T+
Sbjct: 349 NKFKSKARDILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGLAITV 408

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           V + D++    IE  + KK+D      + +   +E+   A  N   +   + +K     +
Sbjct: 409 VTQYDVEGYQKIEANLGKKLDEYKCVENEVMVLVERTQEALENAKVEMKEMDEKRKSGKK 468

Query: 409 RKKN 412
           R++N
Sbjct: 469 RRQN 472


>gi|302873918|ref|YP_003842551.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307689833|ref|ZP_07632279.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302576775|gb|ADL50787.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
           743B]
          Length = 374

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 124/374 (33%), Positives = 208/374 (55%), Gaps = 6/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +LG++  +V  + D G  +PTP+Q ++IP +    D+ G AQTGTGKT +F+LP+ 
Sbjct: 1   MNFKELGINEALVKILKDTGITEPTPVQSESIPHIKAGGDLIGEAQTGTGKTLAFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      V   + LIL PTRELA Q+ +   K  +  ++ +    GG    +Q KKL+
Sbjct: 61  ENISPT---VNNVQALILTPTRELAIQITNQALKLKEGKDINILAAYGGKDIGSQLKKLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH  R  + ++ ++  V+DEAD+ML MGF   +++I  +    RQT
Sbjct: 118 NNIHLIIATPGRLLDHIERKTVDLSKLKTFVLDEADQMLLMGFKNEVESIIKVTSKKRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+  +++K++  ++ +P  + +     T  TI            ++       + 
Sbjct: 178 LCFSATLNSDVKKLAYRYMNDPITVTIKKEEVTLSTI---KQHVVETTDRRKQNALCAVL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIFC  K+   +L   L ++G++   +H +I Q  R +I+  F+    Q ++
Sbjct: 235 DEDNPFMAIIFCRTKRRADDLEVGLYQRGYNCAKLHSDIPQSKRERIMKAFRNADFQYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V H++N+D+P   E+YIHRIGRTGRAG  G     +  ++   ++ I
Sbjct: 295 ATDVAARGLDISGVTHIYNYDIPESVESYIHRIGRTGRAGEEGYTCLFIDPKNNDMLEEI 354

Query: 361 EKLIEKKVDWLNGD 374
           E+ ++ ++     D
Sbjct: 355 EEALKFQIPRRQVD 368


>gi|149927779|ref|ZP_01916031.1| putative ATP-dependent RNA helicase [Limnobacter sp. MED105]
 gi|149823605|gb|EDM82835.1| putative ATP-dependent RNA helicase [Limnobacter sp. MED105]
          Length = 617

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 146/481 (30%), Positives = 233/481 (48%), Gaps = 26/481 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D+GL+  ++ A+       PT +Q + +PL     D+   +QTG+GKT  F+LP++
Sbjct: 1   MSFDDMGLAAPLLQALNALNITAPTLVQQEVVPLGKDGGDLMVSSQTGSGKTFGFLLPVM 60

Query: 61  TILEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             +  G          P  L+L PTRELA QV+ +     K         + G     + 
Sbjct: 61  HRMMTGEQSPMEMLAGPECLVLCPTRELAQQVSQDAINLVKFTKGVRVATVVGGMPYGKQ 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
               RGA +++ TPGR+LD   +GKL ++ +  L++DEADRMLD+GF   ++ I  L   
Sbjct: 121 MASLRGARIVVGTPGRLLDLAQQGKLNLSTVTTLIVDEADRMLDLGFSEDLEAIDQLCGN 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             QTL+FSAT    +  ++EN + NPKRIE+   +     I    +    +  K+     
Sbjct: 181 RIQTLMFSATFAKRIIGLAENIMNNPKRIEMAAQNEANTDIAQKLMWADNRGHKRKL--L 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                   M   ++F + + +  NL   L  +G   CA+HG + Q  R + L++ ++G I
Sbjct: 239 NHWLEHPDMVQAVVFTSTQIDAENLARDLADEGVRACALHGGMPQVVRNRRLASVRKGDI 298

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARGLD+P + HV N+ +P ++E+Y+HRIGRTGRAGR G A TL    DI  
Sbjct: 299 KVLVATDVAARGLDVPAISHVINYGMPMKSEDYVHRIGRTGRAGRSGVAVTLAEACDIIS 358

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNP------------PLEKIDIAQHNHARKNNPIPQKST 404
           +  IE+ I  ++      +  L P            P      +       N+    +  
Sbjct: 359 VRGIERFINSRIPE--EQVEGLEPRGNFTQAPRGGKPSGGRGRSGGGGYAGNSGGRSEGR 416

Query: 405 GF-DRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFR-----GNMPAFMLPKNR 458
            F    +K+Y  + S+   K  E   +     +++  D   F      G+ PAF   K+ 
Sbjct: 417 SFGGGERKSYGDKPSYGDRKPFEAREERSFGERKSYGDKPAFGERKSYGDKPAFGERKSF 476

Query: 459 G 459
           G
Sbjct: 477 G 477


>gi|89092815|ref|ZP_01165767.1| ATP-dependent RNA helicase, DEAD box family protein
           [Oceanospirillum sp. MED92]
 gi|89082840|gb|EAR62060.1| ATP-dependent RNA helicase, DEAD box family protein
           [Oceanospirillum sp. MED92]
          Length = 415

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 143/370 (38%), Positives = 218/370 (58%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+FA L L P +  A+ + GY + TPIQ + I    +  D+   AQTGTGKTA+F LP+L
Sbjct: 1   MNFAALDLHPAIQSALDECGYSEMTPIQRQAIVPARRGRDILANAQTGTGKTAAFSLPVL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L      +   +    IL PTRELA Q+ D   +Y ++  L +  + GG+  + Q KK
Sbjct: 61  QQLADKPKELESGQVRALILTPTRELAQQLFDTIGRYNQHLGLRMVAVYGGVNLDTQMKK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RGAD+LI TPGR+L+H N   + +   E +V+DEADRMLDMGF+  + +I  + P +R
Sbjct: 121 LRRGADLLIATPGRMLEHINACNVNLGTTEFVVLDEADRMLDMGFVTDVMSILDVTPKSR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT++D + K+S   L  P++I+    ++ A+TIEH       Q           
Sbjct: 181 QTLLFSATLSDSVHKLSNKILTRPEKIKAARHNTIADTIEHVVYPVEEQRKADLFAEL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++     ++F + K     L   L+  G      HG+  Q +R + +++FK G IQ+
Sbjct: 239 -IKEENWFQVLVFTSTKAQANELMMDLKYDGIEAVLCHGDKSQGARRRAVADFKAGKIQV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++AARGLDI  +  V N+++P  AE+Y+HR+GR GRAG  GKA + V++E+ + + 
Sbjct: 298 LVATEVAARGLDIQGLEQVVNYNLPYLAEDYVHRVGRAGRAGMAGKAISFVSREEEQALA 357

Query: 359 AIEKLIEKKV 368
           +IEKLI  ++
Sbjct: 358 SIEKLIGSQI 367


>gi|219851679|ref|YP_002466111.1| DEAD/DEAH box helicase domain protein [Methanosphaerula palustris
           E1-9c]
 gi|219545938|gb|ACL16388.1| DEAD/DEAH box helicase domain protein [Methanosphaerula palustris
           E1-9c]
          Length = 550

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 146/367 (39%), Positives = 214/367 (58%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+S ++  A++D G+ +PTPIQ   IPL+ Q  DV G AQTGTGKTA+F +P L  
Sbjct: 29  FEALGISKEIQRAIVDLGFEEPTPIQQMAIPLIHQGFDVIGQAQTGTGKTAAFGIPTLEK 88

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++     V+    LIL PTREL  Q+A+   K  +       L I  G P E Q   L R
Sbjct: 89  IDPLDKHVQ---ALILSPTRELTIQIAEELSKLARYRRGIAILPIYGGQPIERQFDALRR 145

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+I TPGR++DH  RG L+ ++++ +V+DEAD MLDMGF   I+ I    P  RQT 
Sbjct: 146 GVQVVIGTPGRVMDHMRRGTLVFDHVKTVVLDEADEMLDMGFRDDIELILKTTPSDRQTT 205

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM+  + ++++ F ++PK   +   +    T+       Y             L  
Sbjct: 206 LFSATMSQPILELTKRFQKSPK---MVKVTHKELTVAAVEQIYYEVRESLKLEALARLLD 262

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  +IFCN K+ V  L   L+ +G++  A+HG++ Q  R +++  F+ G I ++VA
Sbjct: 263 IYNPKLTLIFCNTKRRVDELVGQLQVRGYAAEALHGDLKQSQRDRVMGRFRSGGIDILVA 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ D+  VFN+D+P   E Y+HRIGRTGRAGR G+AFT V+ ++I  I  I+
Sbjct: 323 TDVAARGIDVDDIEAVFNYDIPQDEEYYVHRIGRTGRAGRTGRAFTFVSGKEIWKIRDIQ 382

Query: 362 KLIEKKV 368
           +    +V
Sbjct: 383 RYTNTRV 389


>gi|95930488|ref|ZP_01313224.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
 gi|95133528|gb|EAT15191.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
          Length = 433

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 137/418 (32%), Positives = 210/418 (50%), Gaps = 10/418 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L   V   V+  G+ + TP+Q + IPL L   D+   AQTGTGKTA+F++ + 
Sbjct: 1   MRFDTLNLPELVQQGVVQLGFSELTPVQEQAIPLALNGRDIAAQAQTGTGKTAAFLIALY 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           T  L   +     PR LI+ PTREL  Q+ ++ +    +  LT+  + GG+ ++ Q +  
Sbjct: 61  TRLLNNPQPTSENPRALIMAPTRELVVQICEDAKGLVPDSPLTIHPVYGGVDYDRQRQAF 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+++ TPGR++D+  +       IE+LVIDEADRM DMGFI  ++ I   +P   +
Sbjct: 121 GKGVDIVVATPGRLIDYAKQKVFSFKRIEVLVIDEADRMFDMGFISDLRFILRRLPSYDK 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
                 + T   + +   +    +  +V              +  +    +K  LL  LL
Sbjct: 181 RQTMLFSATLSPRVMELAYDFMNEAEKVQIEPEQVTAERVEQIVYHVGAKEKIPLLLGLL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      ++F N K++   +   L+        I G+I Q  RM+ILS FKEG +Q++
Sbjct: 241 NGRMADGRVMVFANTKRDTDYVTRVLQANDVKAAQISGDISQVKRMRILSEFKEGKVQVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RG+ I DV HV N+DVP   E+Y+HRIGRT RAG  G A  +  ++ + H+ A
Sbjct: 301 VATDVASRGIHIEDVTHVVNYDVPQDPEDYVHRIGRTARAGASGLAIMMADEDLVYHLPA 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP--QKSTGFDRRKKNYSS 415
           IE+ I   +        S  P  E         ARK+   P   KS G    K +  S
Sbjct: 361 IEEYISSSIP-------SEVPAEELFTWKFKRPARKHKKTPAHSKSPGKGAPKGHSKS 411


>gi|238650986|ref|YP_002916842.1| ATP-dependent RNA helicase RhlE [Rickettsia peacockii str. Rustic]
 gi|238625084|gb|ACR47790.1| ATP-dependent RNA helicase RhlE [Rickettsia peacockii str. Rustic]
          Length = 410

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 141/422 (33%), Positives = 224/422 (53%), Gaps = 15/422 (3%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
            +  LS +++  +      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP++   
Sbjct: 2   KNFNLSEELIIVLETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLIDSF 61

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            K +         IL PTRELA Q+     K   +Y +  A+LIGG P   Q  +L++  
Sbjct: 62  IKNKTTAL-----ILVPTRELATQIHSTLNKVTTSYKINSAVLIGGAPMPKQFMQLKKNP 116

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG    ++ I   +P  RQ L+F
Sbjct: 117 KVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMF 176

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM   +  VS+ +L NP RI V   +  A  I+          S K        Q  +
Sbjct: 177 SATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQ----ESMHVSDKEKFSALTKQLGN 232

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
              + IIF   K++   L   L+ +  +  AIHG++ QR R +++ +F++   ++MVA+D
Sbjct: 233 REGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVATD 292

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +D+    AI++L
Sbjct: 293 VAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIRWRAIDRL 352

Query: 364 IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLK 423
           + K      G+ +  +      +  + +  ++      K   FD  +K      S+   +
Sbjct: 353 VNK------GESTPRSEFRSDKNNRKRSFGKRAGGDGTKFHAFDSSRKRTCDGNSYGNKR 406

Query: 424 ES 425
           + 
Sbjct: 407 KK 408


>gi|71279831|ref|YP_267868.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71145571|gb|AAZ26044.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 466

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 160/432 (37%), Positives = 246/432 (56%), Gaps = 16/432 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGLS  ++ AV D GY  P+PIQ + IP V+   DV   AQTGTGKTA F LP+L 
Sbjct: 7   KFTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQ 66

Query: 62  I---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                +  +      R LIL PTRELAAQ++++ E YGK  NL   ++ GG+    Q  +
Sbjct: 67  RLSSSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIAR 126

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD +N+  +  + +E+ ++DEADRMLDMGFI  I+ + + +P  R
Sbjct: 127 LRQGVDVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPKDR 186

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT + E++ +++  + NP  I V+  +STAE +        A   K+   +   
Sbjct: 187 QNLLFSATFSPEIRALAKGMVNNPLEISVDAENSTAEKV---TQWLTAVDKKRKPAVLTH 243

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  ++  +  ++F   K     L   LE +G +  AIHGN  Q +R K L+ FK+G++++
Sbjct: 244 LIKENNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKI 303

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  +  V NFD+PN  E+Y+HRIGRT RAG  G+A +LV  +++  + 
Sbjct: 304 LVATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDLLW 363

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            IE +I++ ++            +EK  I  +         P K     +  K + + K 
Sbjct: 364 GIEHVIQQHIE---------RKVIEKF-IPANELGESRVIKPLKQGKPPKSAKPHGAGKG 413

Query: 419 HIPLKESEKISK 430
            +  K+ ++  +
Sbjct: 414 RVEHKDGQRSGR 425


>gi|209877961|ref|XP_002140422.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209556028|gb|EEA06073.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 442

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 140/420 (33%), Positives = 228/420 (54%), Gaps = 15/420 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LG+  ++  A    G++KPT IQ + IP+ L+  D+ G+A+TG+GKT +F+LP+L
Sbjct: 29  ITFASLGVCKELCLACESLGWLKPTDIQREAIPIALRGGDIIGLAETGSGKTGAFILPIL 88

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L + ++R+      +L PTREL  Q+++ F   G   +L VA ++GG+    Q   L 
Sbjct: 89  QSLLENQSRMYSV---VLAPTRELCVQISEQFSALGSLISLQVANIVGGMDMVNQALSLA 145

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   +++ +PGR++DH  N     +++++ LV+DEADR+L M F   +  I    P  R 
Sbjct: 146 KKPHIIVASPGRLVDHLENTKGFNISSVKYLVMDEADRLLSMDFEIALTKIIEACPKNRN 205

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT ++ K+    L+NP +I VNT   TAE +   ++       K       +L
Sbjct: 206 TYLFSATMTTKVAKLQRVSLKNPVKICVNTKYDTAENLLQYYMFIPF---KFKWSYLVIL 262

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               +   GIIF N   +       +++ GFS   +HG ++Q  R+  L+ FK     L+
Sbjct: 263 VQNLSQYTGIIFTNTCISCKRGALLMQQLGFSSVCLHGRMNQTQRLAALNQFKSKQRHLL 322

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
             +++ +RGLDIP V  V NFD+P  +++Y+HR+GRT RAGR GKA +LV + D++    
Sbjct: 323 FTTEVGSRGLDIPHVDFVINFDIPMSSKDYVHRVGRTARAGRSGKAISLVTQYDVEMFQR 382

Query: 360 IEKLIEKKVDW---LNGDL-----SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           +E  + KK+D    +N D        +   L   DI       K+N +  + T    +++
Sbjct: 383 VEFALNKKLDEYSDINKDQMMAIHGKVLEALRITDIELSESNEKSNLVGSRKTNKKYKRR 442


>gi|323519553|gb|ADX93934.1| superfamily II DNA/RNA helicase [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 606

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 144/455 (31%), Positives = 235/455 (51%), Gaps = 17/455 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP L 
Sbjct: 4   TFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLH 63

Query: 62  I---------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                      ++    V  P  L+L PTRELA QV+ +   + ++        I G   
Sbjct: 64  NLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             +  +  +GA V++ TPGR+LD  NR +L ++ ++ L++DEADRMLD+GF   ++ I+ 
Sbjct: 124 FGKQIQQLKGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISD 183

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L     QTL+FSAT  D + +++E  +  P+RI + T  ST   I      T     K  
Sbjct: 184 LAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHK-- 241

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L     + +T+   ++F + +++   L   L + G SV A+HG + Q  R + L + +
Sbjct: 242 KKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIR 301

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL    
Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYR 361

Query: 353 DIKHIDAIEKLIEKK--VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           +   I A+E  +E +  V  + G   S  P   + +  +  +  ++    +    F RR+
Sbjct: 362 ERGKIRALEDYLEARLNVSEIEGLEPSPPPARPRREGGRGGNGGRDGRRFEGEGNFKRRE 421

Query: 411 KNYSSQKSH----IPLKESEKISKLQQDIQENDAD 441
                +        P  E        +  +E ++D
Sbjct: 422 GGRDDRPRRSFDDKPRGERPAFGGEDRPRREFNSD 456


>gi|255534825|ref|YP_003095196.1| possible ATP-dependent RNA helicase [Flavobacteriaceae bacterium
           3519-10]
 gi|255341021|gb|ACU07134.1| possible ATP-dependent RNA helicase [Flavobacteriaceae bacterium
           3519-10]
          Length = 380

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 205/373 (54%), Gaps = 5/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ +V   G++KP P+Q +TIP++L   D+ G+AQTG+GKTA FV+P+L
Sbjct: 1   MSFESLGLSHNIIKSVRKLGFLKPFPVQEQTIPVILSGKDLMGVAQTGSGKTACFVMPIL 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF-EAQNKK 118
                +   + R  + L+L PTREL  Q+ + F  + +N    +  +            K
Sbjct: 61  DKLQNEDIKKDRNIQVLVLAPTRELVIQIDEVFRVFTENLKREIRTMAVYGGVSINPQMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              G +VL+ TPGR+LD  +   L ++ I  LVIDEAD+M  +GF   +  + +++P  +
Sbjct: 121 GMLGVEVLVATPGRLLDLIDHKALSISQITHLVIDEADKMFQLGFEEEMNTLFAMMPPKK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT+ D+++++ +     P  +E+       + I       Y   ++      + 
Sbjct: 181 QTVLFSATLNDKVEEIKQRLTIEPVLVEIKQEEVDIDQI---TQIAYHVTNESKGPFLRY 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +  +K  ++F +  ++  +L   L K      AIHG   Q SR   L  FKEG  Q+
Sbjct: 238 LIKEQDIKQALVFASSTRSADHLAEKLNKNKIPATAIHGQKSQGSRSGNLQGFKEGETQI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DL  RG+ I  +  V N+++P    +YIHRIGRTGRA  HG A TL+  ++++H  
Sbjct: 298 LVATDLIGRGIHIDALEVVINYELPRSPLDYIHRIGRTGRANGHGTAITLLTDDELQHFR 357

Query: 359 AIEKLIEKKVDWL 371
            I+K + K+V+ +
Sbjct: 358 VIQKKMGKRVELI 370


>gi|148906006|gb|ABR16163.1| unknown [Picea sitchensis]
          Length = 477

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 110/375 (29%), Positives = 188/375 (50%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 104 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 163

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +    + L+L PTRELA Q +   ++  K+  + + +  GG   +    +L +
Sbjct: 164 KIDP---KKNSIQVLLLVPTRELALQTSQVCKELAKHLKIQIMVTTGGTSLKDDIMRLYQ 220

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD   +G   + +  +LV+DEAD++L   F P ++ +   +P  RQ L
Sbjct: 221 PVHILVATPGRVLDLTKKGVCNLKDCAMLVMDEADKLLSPEFQPLVEQLIGFLPENRQIL 280

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    ++     F     R           T++           ++       L S
Sbjct: 281 LYSATFPVTVKS----FKDKYLRKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFS 336

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 337 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQSHRNRVFHDFRNGACRNLVC 396

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 397 SDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYKIE 456

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 457 QELGTEIQQIPPQID 471


>gi|241563473|ref|XP_002401718.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215501910|gb|EEC11404.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 371

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 134/363 (36%), Positives = 205/363 (56%), Gaps = 9/363 (2%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
            +  LS +++ A+      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP++   
Sbjct: 2   KNFNLSEELIIALETMNITEPTEIQKQSIPVAIAGSDILASSQTGSGKTLAYLLPLIDSF 61

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            K +         IL PTRELA Q+     K    Y +  A+LIGG P   Q  +L++  
Sbjct: 62  IKNKTTAL-----ILVPTRELATQIHSTLNKVTTPYKINSAVLIGGEPMPKQFMQLKKNP 116

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG    ++ I   +P  RQ L+F
Sbjct: 117 KVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEGINKFLPEKRQVLMF 176

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM   +  +S+ +L NP RI V   +  A  I+          S K    +   Q  +
Sbjct: 177 SATMPKHIIALSQKYLNNPVRITVGATNKAAAEIKQ----ESLHISDKEKFSELTKQLGN 232

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
              + IIF   K++   L   L+ +     AIHG++ Q  R +++ +F++   ++MVA+D
Sbjct: 233 REGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQHQRERVILSFRKSNHRIMVATD 292

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +D+    AI++L
Sbjct: 293 VAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGYALSFISPDDVIRWRAIDRL 352

Query: 364 IEK 366
           + K
Sbjct: 353 VNK 355


>gi|50409637|ref|XP_456892.1| DEHA2A12958p [Debaryomyces hansenii CBS767]
 gi|74659543|sp|Q6BY27|DBP2_DEBHA RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49652556|emb|CAG84869.1| DEHA2A12958p [Debaryomyces hansenii]
          Length = 536

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 200/377 (53%), Gaps = 3/377 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ KPT IQ +  P+ L   D+ GIA TG+GKT S+ LP + 
Sbjct: 106 SFDEAGFPDYVLKEVKQQGFPKPTSIQCQGWPMALSGRDMVGIASTGSGKTLSYCLPSIV 165

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      +    P  L+L PTRELA Q+     K+G +  +    + GG P   Q + L
Sbjct: 166 HINAQPLLSPGDGPIVLVLAPTRELAVQIQQECSKFGSSSRIRNTCVYGGAPKGQQIRDL 225

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG ++ I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 226 ARGVEICIATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 285

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+Q ++ ++L +P ++ V +    A       V    ++ K+  L++ L 
Sbjct: 286 TLMWSATWPKEVQALTRDYLNDPIQVTVGSLELAASHTITQLVEVVTEFEKRDRLIKHLE 345

Query: 240 QSQDTMK-NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +    +   +IF + K+    + + L   G+   AIHG+  Q  R  +L  FK G   +
Sbjct: 346 TATADPEAKCLIFASTKRTCDEITNYLRADGWPALAIHGDKQQGERDWVLKEFKTGKSPI 405

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARG+D+  + +V N D+P   E+Y+HRIGRTGRAG  G A +     + K   
Sbjct: 406 MVATDVAARGIDVKGISYVINLDMPGNIEDYVHRIGRTGRAGSTGTAVSFFTDNNSKLGG 465

Query: 359 AIEKLIEKKVDWLNGDL 375
            + K++ +    +  +L
Sbjct: 466 DLCKIMREANQTIPPEL 482


>gi|71747184|ref|XP_822647.1| ATP-dependent DEAD-box RNA helicase [Trypanosoma brucei TREU927]
 gi|70832315|gb|EAN77819.1| ATP-dependent DEAD-box RNA helicase, putative [Trypanosoma brucei]
 gi|261332418|emb|CBH15413.1| ATP-dependent DEAD-box RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 406

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 118/377 (31%), Positives = 195/377 (51%), Gaps = 8/377 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F + GL  ++   + + G+ +P+P+Q + IP+ LQ  DV   A+ GTGKTASFV+P+L
Sbjct: 31  VTFEEYGLRRELQMGIFEKGFERPSPVQEEAIPVALQGKDVLARAKNGTGKTASFVIPVL 90

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             ++    ++   + L++ PTRELA Q A   ++ GK+   L V +  GG        +L
Sbjct: 91  EKVDT---QLPHIQALLMVPTRELALQTAQVTKELGKHITGLEVMVTTGGTTLRDDILRL 147

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    VL+ TPGR +D  ++G   +++  I+V+DEAD++L   F   ++++   +P  RQ
Sbjct: 148 QSVVHVLVATPGRAVDLASKGTAKLDHCRIIVLDEADKLLSQEFTSLMRDLYGFLPKGRQ 207

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT    ++     F     R           T+            ++       L
Sbjct: 208 SLLFSATFPVTVKD----FADKYLRNPYEINLMEELTLRGVTQYYAFVEERQKIHCLNTL 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++  +   IIFCN    V  L   + + G+S   IH  + Q+ R ++  +F+EG  + +
Sbjct: 264 FNRLQINQSIIFCNSVNRVELLAKKITQLGYSCYYIHARMQQQHRNRVFHDFREGHCRNL 323

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A   V  ED  ++  
Sbjct: 324 VCSDLITRGIDIQAVNVVINFDFPKYAETYLHRIGRSGRFGHLGLAINFVTYEDRHNVYR 383

Query: 360 IEKLIEKKVDWLNGDLS 376
           IE+ ++ ++  +  ++ 
Sbjct: 384 IEQELDTEIKPIPAEVD 400


>gi|322799058|gb|EFZ20513.1| hypothetical protein SINV_09810 [Solenopsis invicta]
          Length = 710

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 135/388 (34%), Positives = 214/388 (55%), Gaps = 13/388 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL   ++  +  +GY KPTP+Q   IP+++   DV   AQTG+GKTA+FVLP+L 
Sbjct: 271 SFDQSGLRSILLENIKKSGYTKPTPVQKYAIPIIMSGRDVMACAQTGSGKTAAFVLPILH 330

Query: 62  ILEKGRARV------RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            L + +  +        P  +I+ PTREL +Q+   F+K+  N  + V ++ GG     Q
Sbjct: 331 SLLENQRDLVKTGSSCEPHAIIISPTRELTSQIYTQFKKFSLNSIIRVEVIYGGTSISHQ 390

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             K+  G  VL+ TPGR+LD   RGK++++++   V+DEADRMLDMGF+P I+ I     
Sbjct: 391 TNKVFNGCHVLVATPGRLLDFIGRGKVVLSSLRFFVLDEADRMLDMGFLPDIEKILDHET 450

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQ L+FSAT  +++Q+++  FL+N   + V         +E  F     Q  K+
Sbjct: 451 MVAAEERQMLMFSATFPNDIQELAGRFLRNYLFLAVGIVGGACADVEQIFYQASGQPDKR 510

Query: 232 CALLQ--QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
             L +  +      +++  ++F  QK++   +   L +  +   +IHG+  QR R + LS
Sbjct: 511 KLLKELIEKQNQLGSIEGTLVFVAQKRHTDFIAAFLSENNYPTTSIHGDRLQREREEALS 570

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK+G + ++VA+ +AARGLDI +V HV NFD+P   + Y+HRIGRTGR G  GKA +  
Sbjct: 571 DFKKGKMSILVATAVAARGLDIKNVSHVINFDLPQTIDEYVHRIGRTGRVGNRGKATSFF 630

Query: 350 AKE-DIKHIDAIEKLIEKKVDWLNGDLS 376
               D      + K++++    +   L 
Sbjct: 631 DPNSDTALTGDLIKILKQAGQPIPDWLE 658


>gi|322514183|ref|ZP_08067247.1| ATP-dependent RNA helicase RhlB [Actinobacillus ureae ATCC 25976]
 gi|322119937|gb|EFX91940.1| ATP-dependent RNA helicase RhlB [Actinobacillus ureae ATCC 25976]
          Length = 407

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 130/399 (32%), Positives = 207/399 (51%), Gaps = 6/399 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   V+ A+   G+   TPIQ KT+P+ L  +D+ G AQTGTGKT +F++     
Sbjct: 10  FIDFPIHENVIAALDSKGFEFCTPIQAKTLPITLAGNDIAGQAQTGTGKTMAFLVATFHH 69

Query: 63  LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L     +   + PR LIL PTRELA Q+A + E   K+ +L +AL  GG  +E Q + +E
Sbjct: 70  LLTNDIQTANKQPRALILAPTRELAVQIASDAELLVKHSDLKLALAYGGDGYEKQLQAIE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ T GR++D+  +G + ++ ++++V+DEADRM D+GFI  I+ +        Q 
Sbjct: 130 QGVDILVGTTGRVIDYVKQGVINLDKVQVVVLDEADRMFDLGFIKGIRYLMRKCSKPDQR 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L    + T   +     +        +                 Y     K ALL  LL+
Sbjct: 190 LTMLFSATLSPRVRELAYEDMNNAQYIEIEPLQRTGHRIKEELFYPSNEDKMALLLTLLE 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I    + K    +   L   G     + G+I Q+ R+ +L +F +G + ++V
Sbjct: 250 EEWPERCMIFANTKHK-CEEIWSYLVADGHRAGLLTGDIAQKKRLALLDSFTKGQLDILV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL IP+V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +    ++ AI
Sbjct: 309 ATDVAARGLHIPEVTHVFNYDLPDDREDYVHRIGRTGRAGESGHSISFACERYAVNLPAI 368

Query: 361 EKLIEKKVDWLNGDLS---SLNPPLEKIDIAQHNHARKN 396
           E+ I   +     D S   +L  P       +H HA++ 
Sbjct: 369 EEYIGHPIPVSQYDASALLALPKPARTARAPRHVHAKRR 407


>gi|301166259|emb|CBW25834.1| putative ATP-dependent RNA helicase [Bacteriovorax marinus SJ]
          Length = 431

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 157/377 (41%), Positives = 221/377 (58%), Gaps = 6/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL LS K++  + D GY  PT IQ + IPL+L+  D+ GIAQTG+GKT +F +PM+ 
Sbjct: 3   QFKDLKLSSKLLKTLADKGYSTPTDIQREAIPLILEGRDIQGIAQTGSGKTGAFSIPMIE 62

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                K   + +  R LIL PTRELA Q+    E Y K  NL+ A++ GG     Q +KL
Sbjct: 63  NLSRSKQVVKAKRARALILTPTRELANQINGQVEIYSKGMNLSSAVIFGGDGPLNQVRKL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+LI TPGR+LD   RG + ++ +E  V+DEADRMLDMGFI  I+ I   +P  RQ
Sbjct: 123 ATGVDLLIATPGRLLDFLQRGHIKLDELETFVLDEADRMLDMGFIKDIEKIIERLPKKRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM  ++ K++   L  PK IEV+ PS+  E+I    +            L + +
Sbjct: 183 TLFFSATMPKDISKLASTILTRPKIIEVSPPSTPVESIAQYLIHIDRVQK---PKLLKKI 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   ++ I+F   K     +C  L K G    +IH N  Q +R K L+ F+   I+ +
Sbjct: 240 INESVSESVIVFTRTKYGADRVCKHLMKAGIESSSIHSNRSQGAREKALAAFRNKKIKAL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  + HV N+DVP  AE+YIHRIGRT RAG+ G A+T     + K + A
Sbjct: 300 VATDIAARGIDVDGISHVINYDVPLEAESYIHRIGRTARAGKSGVAYTFCDPAETKSLKA 359

Query: 360 IEKLIEKKVDWLNGDLS 376
           +EKL+  K+  +N D  
Sbjct: 360 VEKLLGFKI-KVNSDFE 375


>gi|302839218|ref|XP_002951166.1| DEAD-box RNA helicase, ATP-dependent, cytoplasmic [Volvox carteri
           f. nagariensis]
 gi|300263495|gb|EFJ47695.1| DEAD-box RNA helicase, ATP-dependent, cytoplasmic [Volvox carteri
           f. nagariensis]
          Length = 406

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 114/376 (30%), Positives = 193/376 (51%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGKTA+F +P+L 
Sbjct: 33  EFEDYFLKRELLMGIFEKGFEKPSPIQEESIPIALAGRDILARAKNGTGKTAAFCIPVLE 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  R    + + L+L PTRELA Q A   ++  K  N+ V +  GG   +    +L +
Sbjct: 93  RVDPTR---SVIQALLLVPTRELALQTAQVCKELAKYLNVEVMVTTGGTSLKDDIMRLYQ 149

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++D   +G   +N  ++LV+DEAD++L   F P ++ +   +P  RQ +
Sbjct: 150 TTHIVVATPGRVVDLAGKGVARLNECKMLVMDEADKLLSPEFQPVVEQLIGFLPEDRQIM 209

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    ++     F +   R           T++           K+       L S
Sbjct: 210 LYSATFPVTVKA----FKEKFLRKPYIINLMEELTLKGVTQYYAFVEEKQKVHCLNTLFS 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 266 KLRINQSIIFCNSVNRVELLAKKITELGYSCYYIHAKMLQSHRNRVFHDFRNGHCRNLVS 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  +D  ++  IE
Sbjct: 326 SDLFTRGIDIQSVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYDDRINLFKIE 385

Query: 362 KLIEKKVDWLNGDLSS 377
           + +  ++  +   +  
Sbjct: 386 QELGTEIKPIPAQIEE 401


>gi|294901517|ref|XP_002777393.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239885024|gb|EER09209.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 515

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 114/380 (30%), Positives = 188/380 (49%), Gaps = 18/380 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F   G    ++  +  AG+ KP+PIQ++  P+ +   D+ GIA+TG+GKT +F+LP +
Sbjct: 117 VTFEQAGFPDYILHEIKQAGFEKPSPIQVQGWPVAMSGRDMVGIAETGSGKTLAFLLPAI 176

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA Q  +   ++G++  +    + GG P   Q + 
Sbjct: 177 VHINAQPYLQRGDGPIVLVLAPTRELAVQTQEECNRFGRSSRIRNTCVYGGTPRGPQARA 236

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G ++ I TPGR++D    G+  +  +  L+                + ITS V   R
Sbjct: 237 LANGVEICIATPGRLIDFLESGRTNLRRVTYLI----------------RKITSQVRPDR 280

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLL+SAT   E+Q ++ +  +           S   +          Q  +K   L+QL
Sbjct: 281 QTLLWSATWPKEIQGLARDLCREEPVHINVGSMSLRASHNVTQYVDIVQDYEKKDKLKQL 340

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+        +IF + K+   +L   L   G+   +IHG+  Q  R  +L  FK G   +
Sbjct: 341 LERIMDGSKIVIFTDTKRAADDLTRMLRMDGWPALSIHGDKKQEERDWVLQEFKSGKSPI 400

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+D+A+RGLD+ D+ HV N+D P + E+Y+HRIGRTGRAG  G A++    +  K   
Sbjct: 401 MIATDVASRGLDVKDLRHVINYDFPGQIEDYVHRIGRTGRAGAKGSAYSFFTPDKYKLAK 460

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    +  +L  +
Sbjct: 461 DLIGVLREAEQAVPPELEKI 480


>gi|258563612|ref|XP_002582551.1| ATP-dependent rRNA helicase RRP3 [Uncinocarpus reesii 1704]
 gi|237908058|gb|EEP82459.1| ATP-dependent rRNA helicase RRP3 [Uncinocarpus reesii 1704]
          Length = 472

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 134/430 (31%), Positives = 221/430 (51%), Gaps = 10/430 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +  A    GY  PT IQ ++IPL LQ  DV G+A+TG+GKTA+F LP+L 
Sbjct: 47  SFKDLGVIDSLCEACESLGYKAPTQIQAESIPLALQGRDVIGLAETGSGKTAAFALPILQ 106

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    L+L PTRELA Q+++  E  G   ++  A+++GG+   +Q   L +
Sbjct: 107 AL---MDKPQSMFGLVLAPTRELAYQISEQVEALGSLISVRCAVIVGGMDMVSQAIALGK 163

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +    N     + N++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 164 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPKERRT 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L NP R+ +++                    K    +   L 
Sbjct: 224 YLFSATMSSKVESLQRASLSNPLRVSISSNKYQTVATLLQNYLFIPHKYKDIYFV--YLL 281

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ I+F         L   L   GF    +HG + Q +R+  L  F+  +  ++V
Sbjct: 282 NEFPGQSVIVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILV 341

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V N+D+P+ ++ YIHR+GRT RAG+ G AF+LV + DI+    I
Sbjct: 342 ATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGHAFSLVTQFDIEIWQRI 401

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI----PQKSTGFDRRKKNYSSQ 416
           E  + K  D    +   +    +++  AQ +   +   +     +K      R+    ++
Sbjct: 402 EGALGKTFDEYKTEKEEVMVLSDRVSEAQRHAITEMKELHENRGKKGATLRNRRTGNGAK 461

Query: 417 KSHIPLKESE 426
           +    +   E
Sbjct: 462 RGRDEMDREE 471


>gi|225463593|ref|XP_002271370.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
          Length = 543

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 130/397 (32%), Positives = 210/397 (52%), Gaps = 16/397 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     ++  +   G V+PTPIQ++ +P++L   D+ GIA TG+GKT  FVLP++ 
Sbjct: 99  NFKDMRFPEPILKNLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPLIM 158

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
                 +         P  L++ P+RELA Q  +  E++           L   L IGG+
Sbjct: 159 VALQEEVSMPIVPGEGPFGLVICPSRELARQTYEVVEQFLVPMRECGYPELRPLLCIGGV 218

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + +++G  +++ TPGR+ D   + KL ++N   L +DEADR++D+GF   I+ +
Sbjct: 219 DMRSQLEVVKKGVHIIVATPGRLKDMLAKKKLNLDNCRYLTLDEADRLVDLGFEDDIREV 278

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 279 FDHFKAQRQTLLFSATMPTKIQN----FARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 334

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IFC  K +V ++   L  +G    AIHG  DQ  R   +S+
Sbjct: 335 EAKIVYLLECLQKTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISS 394

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 395 FKAGKKDVLVATDVASKGLDFPDIKHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 454

Query: 351 KEDIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
           K   +  +  ++ L+++    +   L+ LN P+E +D
Sbjct: 455 KNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVD 491


>gi|224096618|ref|XP_002310673.1| predicted protein [Populus trichocarpa]
 gi|222853576|gb|EEE91123.1| predicted protein [Populus trichocarpa]
          Length = 462

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 132/396 (33%), Positives = 213/396 (53%), Gaps = 6/396 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+  ++V A    G+  PT IQ++ +P  L+  D+ G+AQTG+GKT +F LP+L 
Sbjct: 27  SFKDLGICDQLVEACDSLGWKNPTKIQVEAVPHALEGKDLIGLAQTGSGKTGAFALPILQ 86

Query: 62  ILEKGRARVRMPRT-LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L +   +   P    +L PTRELA Q+A+ FE  G    L   +L+GG+    Q   L 
Sbjct: 87  ALLESSQKSVQPFFACVLSPTRELAIQIAEQFEALGSGIGLRCGVLVGGVDIVQQTLILA 146

Query: 121 RGADVLICTPGRI-LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   +++ TPGR+     N     +  ++ LV+DEADR+L+  F   +  I +++P  R+
Sbjct: 147 KRPHIVVATPGRLLDHLSNTKGFSLRTLKYLVLDEADRLLNEEFEKSLDEILNVIPRDRK 206

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L+NP +IE  +  ST +T+           SK        +
Sbjct: 207 TYLFSATMTKKVKKLQRACLRNPVKIEAASKYSTVDTL---KQQYRFVPSKHKDCYLVYI 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++ +    ++F         L   L   G     I+G++ Q  R+  L+ FK     ++
Sbjct: 264 LTEMSNSTAMVFTRTCDATSFLALVLRNLGLRAIPINGHMSQPKRLGALNKFKARECNVL 323

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+A+RGLDIP V  V N+DVP+ +++YIHR+GRT RAGR G A +LV + +++    
Sbjct: 324 ICTDVASRGLDIPSVDMVINYDVPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYLQ 383

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK-IDIAQHNHAR 394
           IE LI KK+         +   L++ ID  + +H +
Sbjct: 384 IENLIGKKLPEFPAQEEEVLMLLDRVIDAKRISHTK 419


>gi|225463591|ref|XP_002271334.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
          Length = 587

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 130/397 (32%), Positives = 210/397 (52%), Gaps = 16/397 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     ++  +   G V+PTPIQ++ +P++L   D+ GIA TG+GKT  FVLP++ 
Sbjct: 143 NFKDMRFPEPILKNLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPLIM 202

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
                 +         P  L++ P+RELA Q  +  E++           L   L IGG+
Sbjct: 203 VALQEEVSMPIVPGEGPFGLVICPSRELARQTYEVVEQFLVPMRECGYPELRPLLCIGGV 262

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + +++G  +++ TPGR+ D   + KL ++N   L +DEADR++D+GF   I+ +
Sbjct: 263 DMRSQLEVVKKGVHIIVATPGRLKDMLAKKKLNLDNCRYLTLDEADRLVDLGFEDDIREV 322

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 323 FDHFKAQRQTLLFSATMPTKIQN----FARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 378

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IFC  K +V ++   L  +G    AIHG  DQ  R   +S+
Sbjct: 379 EAKIVYLLECLQKTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISS 438

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 439 FKAGKKDVLVATDVASKGLDFPDIKHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 498

Query: 351 KEDIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
           K   +  +  ++ L+++    +   L+ LN P+E +D
Sbjct: 499 KNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVD 535


>gi|147861063|emb|CAN78736.1| hypothetical protein VITISV_003102 [Vitis vinifera]
 gi|297743544|emb|CBI36411.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 130/397 (32%), Positives = 210/397 (52%), Gaps = 16/397 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     ++  +   G V+PTPIQ++ +P++L   D+ GIA TG+GKT  FVLP++ 
Sbjct: 143 NFKDMRFPEPILKNLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPLIM 202

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
                 +         P  L++ P+RELA Q  +  E++           L   L IGG+
Sbjct: 203 VALQEEVSMPIVPGEGPFGLVICPSRELARQTYEVVEQFLVPMRECGYPELRPLLCIGGV 262

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + +++G  +++ TPGR+ D   + KL ++N   L +DEADR++D+GF   I+ +
Sbjct: 263 DMRSQLEVVKKGVHIIVATPGRLKDMLAKKKLNLDNCRYLTLDEADRLVDLGFEDDIREV 322

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 323 FDHFKAQRQTLLFSATMPTKIQN----FARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 378

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IFC  K +V ++   L  +G    AIHG  DQ  R   +S+
Sbjct: 379 EAKIVYLLECLQKTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISS 438

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 439 FKAGKKDVLVATDVASKGLDFPDIKHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 498

Query: 351 KEDIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
           K   +  +  ++ L+++    +   L+ LN P+E +D
Sbjct: 499 KNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVD 535


>gi|313228985|emb|CBY18137.1| unnamed protein product [Oikopleura dioica]
          Length = 451

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 114/429 (26%), Positives = 207/429 (48%), Gaps = 4/429 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +  LG+  +V    +D  + KPTPIQ K+IP+ ++  DV G+A+TG+GKTA+F +P+L  
Sbjct: 26  WQSLGVCDEVAQTCVDLKWSKPTPIQQKSIPIAIEGKDVIGLAETGSGKTAAFAIPVLQT 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K     R+   ++                           ++ G      Q    ++ 
Sbjct: 86  LLKTPGGGRLSCLVMTPTRELAFQIREQFQALGSSIGLSCACIVGGIEMMSQQLALAKKP 145

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++      +          +  ++ L++DEADR+L++ F   +  I   +P  RQT+L
Sbjct: 146 HVIVATPGRLVDHLEKTRGFNLKALKFLIMDEADRILNLDFEAEVDKILRAIPRERQTML 205

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATMT +++K+    L+NP +I +N+   T +     ++     + +   +      ++
Sbjct: 206 FSATMTAKVKKLQRAALKNPVKISINSKYKTVDKNIQKYMFIPEAHKECYLVSLL---NE 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
               + +IF +       +   +++ G+    +HG + Q+ R+  L+ FK  +  ++V +
Sbjct: 263 LQGSSFMIFTSTCAKTSLIARLVKRLGYDSVPLHGQMSQQKRLGALARFKGKSRSILVCT 322

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLD+P V  V N+DVP   ++YIHR+GRT RAGR GK+ T V++ D++    IE 
Sbjct: 323 DVASRGLDVPHVDCVINYDVPTNTKDYIHRVGRTARAGRAGKSVTFVSQYDVELYQKIEA 382

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK-KNYSSQKSHIP 421
            I KK+D    +   +    E++D A+    ++      K     +R+     S K  I 
Sbjct: 383 HIGKKLDQWPCEKDEVMALKERVDEAKRIAVQEIKEEEGKRKSKKKRQFDEEQSIKDRIG 442

Query: 422 LKESEKISK 430
             + +K  K
Sbjct: 443 KVKHKKRRK 451


>gi|254476796|ref|ZP_05090182.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
 gi|214031039|gb|EEB71874.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
          Length = 447

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 143/374 (38%), Positives = 230/374 (61%), Gaps = 5/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ +GL  K++  + + G+ +PTPIQ + IP  L   DV G+AQTGTGKTA+F +P++ 
Sbjct: 3   EFSTMGLPEKLLSRIDEMGFKEPTPIQARAIPHALNGKDVLGLAQTGTGKTAAFGVPLIA 62

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            + +   +   +  R L+L PTRELA Q+A   +   +   L   L++GG+    Q  +L
Sbjct: 63  QMMQYGRKPAAKTVRGLVLAPTRELANQIAATLKGLTEGTPLKTGLVVGGVSINPQISRL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+LI TPGR+LD  +RG L + + + LV+DEAD+MLD+GFI  ++ I+SL+P  RQ
Sbjct: 123 SRGTDILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKISSLLPQERQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  ++ +++ ++L  P RIEV+      +  +    + +     +   L + L
Sbjct: 183 TMLFSATMPKQMNEIANSYLNAPVRIEVSP---PGKAADKITQSVHFIAKAEKLSLLKEL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  ++F   K  +  L  +L   GFS  AIHGN  Q  R + L+ FK G ++++
Sbjct: 240 LAEHKDERTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALAAFKSGEVKIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIPDV  V+N+++PN  + Y+HRIGRT RAG+ G+A    A +++  + A
Sbjct: 300 VATDVAARGLDIPDVKFVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEMDELKA 359

Query: 360 IEKLIEKKVDWLNG 373
           I+K ++  +   +G
Sbjct: 360 IQKTMKITIPVASG 373


>gi|212533429|ref|XP_002146871.1| ATP-dependent RNA helicase (Drs1), putative [Penicillium marneffei
           ATCC 18224]
 gi|210072235|gb|EEA26324.1| ATP-dependent RNA helicase (Drs1), putative [Penicillium marneffei
           ATCC 18224]
          Length = 826

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 158/477 (33%), Positives = 235/477 (49%), Gaps = 19/477 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  LS  ++  +   G+ KPTPIQ K IP+ L   DV G A TG+GKT +F++P+L 
Sbjct: 305 SFQNYNLSRPILRGLAAVGFTKPTPIQRKAIPVALLGKDVVGGAVTGSGKTGAFIIPILE 364

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   + +V   R  IL PTRELA Q  +   K     ++T   LIGG     Q   L++
Sbjct: 365 RLLYRQRKVPTSRVAILMPTRELAVQCFNVATKLATYTDITFCQLIGGFSLREQENILKK 424

Query: 122 GADVLICTPGRILDHFNRGKLLMNNI-EILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR +DH         +  EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 425 RPDIIIATPGRFIDHMRNSSSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 484

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTD + K+    L  P R+ V+    TA T+   FV        K       L 
Sbjct: 485 MLFSATMTDSVDKLIRVGLNRPVRLMVDAKKQTAGTLVQEFVRLRPGREDKRLASLIHLC 544

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      IIF  QKK    +       G     +HG++ Q  R+K + +F++G +  ++
Sbjct: 545 QQVYTSRVIIFFRQKKEAHRVRVIFGLFGLKAAELHGSMSQEQRIKSVEDFRDGKVAFLL 604

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA- 359
           A+D+A+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A TL A  D K + A 
Sbjct: 605 ATDVASRGLDIKGVETVINYEAPQTHEIYLHRVGRTARAGRSGRACTLAADPDRKVVRAA 664

Query: 360 -----------IEKLIEKKV-DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
                      I ++I  ++ D L  ++  L   ++ I   +           Q S G +
Sbjct: 665 VKAGKTQGAKIISRVIGSEIQDELATEIEDLQDEIDAILREEKEEKELAQVEMQTSKGEN 724

Query: 408 RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
             K  + ++    P +   +  K +Q+ Q+     L     + A +  K + KL+ K
Sbjct: 725 LLK--HQTEIMSRPKRTWFETEKEKQEAQKRGLIEL---NGLDASLSKKEKRKLSGK 776


>gi|251796764|ref|YP_003011495.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
 gi|247544390|gb|ACT01409.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
          Length = 477

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 140/395 (35%), Positives = 224/395 (56%), Gaps = 14/395 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS ++  A+   G+  PT +Q K IP+ L++ D+   +QTG+GKTA++ +P+  +
Sbjct: 4   FKE--LSKEITTALSSLGFDTPTEVQAKVIPIALEKRDLVVKSQTGSGKTAAYGIPLCEL 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +   P+ LIL PTRELA QV ++    G+   +    L G  PF  Q  +L++ 
Sbjct: 62  VEWNENK---PQALILTPTRELAVQVTEDITNIGRFKRIKATALYGKSPFHIQRAELKQR 118

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  RG L ++ +  LVIDEAD ML+MGFI  +Q+I   +P  R T+L
Sbjct: 119 THMVVGTPGRVLDHIERGTLALDKLAYLVIDEADEMLNMGFIEQVQSIIQALPKGRVTML 178

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT  +++ K+S  ++ +P +IE+     T  TIEH   +           L Q +   
Sbjct: 179 FSATFPEDVAKLSRRYMDSPAQIEIQASGLTTATIEH---SLIEVKEADKLALLQDVLVV 235

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +   + IIFC  ++NV  L  S+ +  +    IHG ++Q  R ++++ F+ G  + ++A+
Sbjct: 236 ENPDSCIIFCRTQENVDKLFRSMAELDYPCDRIHGGLEQEERFEVMNAFRRGQFRYLIAT 295

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI ++ HV N+D+P   E+Y+HR GRTGRAG++GKA T +A  D K +  IE 
Sbjct: 296 DVAARGIDITNITHVINYDIPLEKESYVHRTGRTGRAGKNGKAITFLAPNDGKRLAEIED 355

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
            I   +  +        P  E ++       RK N
Sbjct: 356 YIGFSIPRVQA------PSEEAVNNRLEEFERKIN 384


>gi|163792426|ref|ZP_02186403.1| DEAD/DEAH box helicase domain protein [alpha proteobacterium
           BAL199]
 gi|159182131|gb|EDP66640.1| DEAD/DEAH box helicase domain protein [alpha proteobacterium
           BAL199]
          Length = 446

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 159/448 (35%), Positives = 242/448 (54%), Gaps = 15/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGL+  ++      GY  PTPIQ+  IP +L   D+ G+AQTGTGKTA+F LPML 
Sbjct: 5   DFRSLGLAESLLRTAATCGYTTPTPIQVAAIPPLLAGRDLIGLAQTGTGKTAAFTLPMLH 64

Query: 62  ILEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L     +   + PR LIL PTRELA Q+A   E +G++  L  AL+ GG+    Q   L
Sbjct: 65  RLAAAGEKRIPKAPRALILTPTRELAVQIAGVVETFGRSIGLRHALVHGGVSARPQAVAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +V+I TPGR+LD  N+  + ++ +E  V+DEADRMLD+GF+  ++ I +LVP  RQ
Sbjct: 125 QRGVEVMIATPGRLLDLINQRAVFLDKVEYFVLDEADRMLDLGFVRDVKRIAALVPANRQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM   + +++E+ L+NP+R+++   S+  E I+   +       +         
Sbjct: 185 TALFSATMPQSIIELTESLLRNPERVQITPTSTPIERIQQSVMFVARANKRTLLARLL-- 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   I+F   K  V  +  SL + G +   +HGN  Q +R   L  FK G + ++
Sbjct: 243 -GAPDVSRAIVFVRTKHGVDRVVDSLRRDGLTAEGLHGNKSQGARQTALDAFKRGRLPIL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ ++ HV N D+P+  E YIHRIGRT RAG  G A +    E+I +  A
Sbjct: 302 VATDIAARGIDVHEISHVINLDLPDVPETYIHRIGRTARAGAGGIAVSFCENEEIGNFMA 361

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE  I + +D        ++      D A     R     P  ++   R ++N +     
Sbjct: 362 IESEIRRTID--------VDSTHSFHDTAIEAQYRSGRRPPVAAS--QRARRNNNGGGGG 411

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRG 447
            P +++++  + Q     ND++    R 
Sbjct: 412 RPQQDAQRRGRPQGKSSSNDSNRRPRRS 439


>gi|254495452|ref|ZP_05108376.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
 gi|85819807|gb|EAQ40964.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
          Length = 411

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 151/391 (38%), Positives = 231/391 (59%), Gaps = 6/391 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+D+ L+  +  A+ +A + KPT +Q KTIPLVL + +V   AQTGTGKTA+F LP++
Sbjct: 1   MQFSDIPLNKSIQKAIAEARFHKPTLVQEKTIPLVLDKKNVIVAAQTGTGKTAAFALPII 60

Query: 61  ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      +  + L++ PTRELA Q+ +NF+ Y K  NL    + GG+  E Q +
Sbjct: 61  NLLFDKQDAEKGEKKIKALVITPTRELAIQILENFKSYSKYSNLRSTAVFGGVSLEPQKE 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +G D+L+ TPGR++D   +G + ++ +EI V+DEAD MLDMGFI  I+ I  L P  
Sbjct: 121 ILAKGVDILVATPGRLIDLQMQGNIDLSQLEIFVLDEADLMLDMGFINDIKKIEKLCPRK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTLLFSAT+ +++ ++S++ ++N  ++++N   +TA+ I       Y    K    L  
Sbjct: 181 KQTLLFSATIPEKIDELSKSIVKNATKVDINPEETTAKNIGQ---LLYYLPKKNKTDLCL 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L         IIF   K  V  L  +L K G++V +IHG+  Q  R K + +FK     
Sbjct: 238 HLLRNTINGKIIIFRRTKFAVDKLEQTLIKNGYNVASIHGDKTQGVRNKAIEDFKSKKAS 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARG+DI +V  + NFD+PN  E Y+HRIGRTGRAG+ G AF+  + ++  +I
Sbjct: 298 ILIATDVAARGIDITNVDAIINFDIPNVPEIYVHRIGRTGRAGKSGIAFSFCSPDENNYI 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
            +IE LIEK +  +      +N P      A
Sbjct: 358 ASIENLIEKSIKVIEDHPYPINKPKHTKKQA 388


>gi|194290281|ref|YP_002006188.1| dead/deah box helicase/ATP-dependent RNA helicase [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224116|emb|CAQ70125.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP-DEPENDENT
           RNA HELICASE (C-terminal)(rhlE-like) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 624

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 145/383 (37%), Positives = 221/383 (57%), Gaps = 21/383 (5%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM------ 59
           LGL   ++ A+ D  Y  PTP+Q + IP  L   D+   +QTG+GKTA+F+LP       
Sbjct: 54  LGLDAAILRALSDLNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQRISE 113

Query: 60  ------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALL 106
                           ++ R     P  L+L PTRELA QV +   KYG+N   +  A +
Sbjct: 114 MPAPQRATEPAKRMKGKRPRPAPAQPALLVLTPTRELALQVTEAAAKYGRNLRRIVCASI 173

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
           +GG+P+  Q   L +  D+L+ TPGR+LDH + G++ ++ +++LV DEADRMLDMGF   
Sbjct: 174 LGGMPYPKQLAMLAKMPDILVATPGRLLDHIDAGRIDLSALQMLVFDEADRMLDMGFADD 233

Query: 167 IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
           I  I +  P +RQTL+FSAT+   + +++   L++P+RIE+    +    IE     T  
Sbjct: 234 IDAIVNATPASRQTLMFSATLDARIAQLASRQLKDPQRIEIAAARADQSHIEQRLHFTDD 293

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              K+       L    ++K  I+F   K++  +L   L   GFS  A+HG++ Q +R +
Sbjct: 294 MSHKERL--LDHLLRDASLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNR 351

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L+  + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR G A 
Sbjct: 352 TLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAI 411

Query: 347 TLVAKEDIKHIDAIEKLIEKKVD 369
            LV   D+     IE+   ++VD
Sbjct: 412 NLVNHNDMFQWRRIERFTNQRVD 434


>gi|145594638|ref|YP_001158935.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           tropica CNB-440]
 gi|145303975|gb|ABP54557.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440]
          Length = 579

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 142/366 (38%), Positives = 206/366 (56%), Gaps = 1/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL  +++ A+   GY +PTPIQ + IP +L   D+ G A TGTGKTA+F LPML  
Sbjct: 23  FVDLGLRDELLAALAALGYEEPTPIQREAIPPLLAGRDLLGQAATGTGKTAAFALPMLQR 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +   R     P  L+L PTRELA QV++ F +YGK     V  + GG P   Q + L+ G
Sbjct: 83  MPANR-STTNPVALVLVPTRELAVQVSEAFHRYGKELGARVLPIYGGQPIGRQLRALDAG 141

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR LDH  RG L + ++  +V+DEAD MLDMGF   I+ I    P  RQT+L
Sbjct: 142 VDVVVATPGRALDHIARGTLRLGDVGTVVLDEADEMLDMGFAEDIEAILEHAPEQRQTVL 201

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +  ++   L +P RI +      A        + Y             +   
Sbjct: 202 FSATMPARIDGMARAHLTDPIRILIAREKPVAGEAPRVRQSAYLVSRAHKPAALGRVLDV 261

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           ++    I+FC  ++ V  L  ++  +G+   A+HG + Q  R +++   + GT  L+VA+
Sbjct: 262 ESPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVAT 321

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  + HV N+DVP+  E+Y+HRIGR GRAGR G A TL      + +  IE+
Sbjct: 322 DVAARGLDVEQLSHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPRAHRMLKTIER 381

Query: 363 LIEKKV 368
           +  +++
Sbjct: 382 VTGQRI 387


>gi|319897620|ref|YP_004135817.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
 gi|317433126|emb|CBY81500.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
          Length = 415

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 127/379 (33%), Positives = 196/379 (51%), Gaps = 4/379 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDLPLHPIVRDALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 71  LLTYQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P  + 
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIALDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L    + T   +     F       E        +T        +   ++    L   L
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMND-PEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTL 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G + ++
Sbjct: 250 MEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDIL 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ A
Sbjct: 310 VATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPA 369

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+ I   +     +  +L
Sbjct: 370 IEEYIGHSIPVSQYETEAL 388


>gi|145634056|ref|ZP_01789767.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
 gi|145268500|gb|EDK08493.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
          Length = 415

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 124/379 (32%), Positives = 195/379 (51%), Gaps = 4/379 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDLPLHPIVRDALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        PR LIL PTREL+ Q++++ E   K   L  +L  GG  ++ Q + +
Sbjct: 71  LLTHQDPNLEYPHPRALILAPTRELSVQISNDAEFLSKASGLNTSLAYGGDGYDKQLQAI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P  + 
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVICLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L    + T   +     F       E        +T        +   ++    L   L
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMND-PEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTL 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G + ++
Sbjct: 250 MEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDIL 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ A
Sbjct: 310 VATDVVARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPA 369

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+ I   +     +  +L
Sbjct: 370 IEEYIGHSIPVSQYETEAL 388


>gi|33598813|ref|NP_886456.1| putative ATP-dependent RNA helicase [Bordetella parapertussis
           12822]
 gi|33574943|emb|CAE39607.1| putative ATP-dependent RNA helicase [Bordetella parapertussis]
          Length = 481

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 164/448 (36%), Positives = 244/448 (54%), Gaps = 23/448 (5%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA---R 69
           + A+ D GY  PTPIQ + IPLVLQ  D+   AQTGTGKTA F LP+L  L + +    +
Sbjct: 1   MRAIADTGYTAPTPIQAQAIPLVLQGGDLLAAAQTGTGKTAGFTLPILHRLMQTKPAARK 60

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              PR LIL PTREL AQVA++ + YGK  +L+  ++ GG+    Q   L++  D+L+ T
Sbjct: 61  PGRPRCLILTPTRELTAQVAESVQTYGKYASLSSMVMFGGVNINPQISALKKPLDILVAT 120

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGR+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ + +L+P  RQ LLFSAT +D
Sbjct: 121 PGRLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQRQNLLFSATFSD 180

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
           E++ ++   L +P  + V   ++  E +          + +           +      +
Sbjct: 181 EIRSLARGVLNDPGEVSVTPRNTATELVTQTVHLVEQHHKRDLVSHL---IRESGWHQVL 237

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           +F   K     L   L K G S  AIHGN  Q +R + LS FK+G++ ++VA+D+AARGL
Sbjct: 238 VFTRTKHGANRLAEKLVKDGLSAAAIHGNKSQSARTRALSGFKDGSVAVLVATDIAARGL 297

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           DI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV   +IK + AIE+LI+K ++
Sbjct: 298 DIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDDSEIKLLKAIERLIKKPIE 357

Query: 370 ------WLNG-------DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
                 W          D +     +   D  +     +     Q++ G +R  +    Q
Sbjct: 358 RRAVDGWTPPAGGPTAEDRADREREMRDDDRGRGRRGDRGGDRGQRAGGDNRAPQARDGQ 417

Query: 417 K----SHIPLKESEKISKLQQDIQENDA 440
           +    +H         +  + D + NDA
Sbjct: 418 RRATGAHPQGSAPRNAAGPRADAKRNDA 445


>gi|294084931|ref|YP_003551691.1| putative DEAD box ATP-dependent RNA helicase protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664506|gb|ADE39607.1| putative DEAD box ATP-dependent RNA helicase protein [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 651

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 148/446 (33%), Positives = 235/446 (52%), Gaps = 10/446 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  L   ++  +   G V PTPIQ  +IPL+L  HD+ G+AQTGTGKTA+F+LP++T
Sbjct: 18  KFADFDLPENMLGTLAREGLVVPTPIQQMSIPLLLLGHDLIGLAQTGTGKTAAFLLPLMT 77

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                      + P+ LIL PTRELA Q++ N  +   + N+    + GG  +E Q + L
Sbjct: 78  QLSYSPSVRSGQPPKALILAPTRELANQISANLSRLSADMNIRHICVFGGARYEGQIRGL 137

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG D+++ TPGR++D   RG    + I   ++DEAD MLD+GF P +++I++ +P  RQ
Sbjct: 138 KRGVDIVVATPGRLMDLMERGSFDPSGITHWILDEADHMLDLGFYPAMKHISASLPADRQ 197

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  E++K+   FL +P+R++      TA+ I            +         
Sbjct: 198 TMLFSATMPPEIEKLGNEFLTDPERVKAPQSGITADKITQRVTLMAEADKRDRLCDVLNH 257

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +IF   K+    L   +E +GF+V  +HG++ Q  R K+L NF++G +Q +
Sbjct: 258 EDTGQC---LIFVRTKRRADALSKFMEDRGFAVDTLHGDMRQGLRQKVLRNFRDGRLQGL 314

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI  + HV NFD+ +  E Y+HRIGRTGRAG  G A +  +  +   + A
Sbjct: 315 IATDVAARGIDIAGLSHVVNFDLTDTPEAYVHRIGRTGRAGLGGLALSFCSPSEEPRLAA 374

Query: 360 IEKLIEKKVDWLNGDLSSL-----NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           I   +  +V+  + D   +      P   K    Q    R  +  P+       R  N  
Sbjct: 375 IIAAVGPRVELFDMDGEPVTDFHAKPAKAKGRSRQRPGNRGASGRPRGERSEGGRSDNRR 434

Query: 415 SQKSHIPLKESEKISKLQQDIQENDA 440
           +       + S+   K  +  + + +
Sbjct: 435 ADSGRGNSRSSDSGRKPARQSEGDTS 460


>gi|226532852|ref|NP_001150170.1| ATP-dependent RNA helicase dhh1 [Zea mays]
 gi|195637296|gb|ACG38116.1| ATP-dependent RNA helicase dhh1 [Zea mays]
          Length = 503

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 115/375 (30%), Positives = 195/375 (52%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L 
Sbjct: 130 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE 189

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     +++    IL PTRELA Q +   ++ GK  N+ V +  GG   +    +L +
Sbjct: 190 KIDPENNAIQVV---ILVPTRELALQTSQVCKELGKYLNIEVMVSTGGTSLKDDIMRLYQ 246

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P ++ +   +P +RQ L
Sbjct: 247 PVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLLAPEFQPSVEALIHFLPPSRQLL 306

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    +++  E +L  P  I          T++           ++       L S
Sbjct: 307 MFSATFPVTVKEFKEKYLPRPYVI----NLMDELTLKGITQYYAFVEERQKVHCLNTLFS 362

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 363 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 422

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 423 TDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRYGHLGLAVNLITYEDRFNLYRIE 482

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 483 QELGTEIKTIPPQID 497


>gi|224370329|ref|YP_002604493.1| predicted ATP-dependent RNA helicase [Desulfobacterium
           autotrophicum HRM2]
 gi|223693046|gb|ACN16329.1| predicted ATP-dependent RNA helicase [Desulfobacterium
           autotrophicum HRM2]
          Length = 411

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 127/374 (33%), Positives = 208/374 (55%), Gaps = 4/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F    +S  +   +   G+V+PT IQ K IP +L+  DV  IAQTGTGKTA+F +P+ 
Sbjct: 1   MKFEKYHISEDLKKNLAALGFVRPTDIQFKAIPSILKGEDVLAIAQTGTGKTAAFAIPVI 60

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 K   R R  R L++ PTRELA Q+   F+   ++  +    L GG+  + Q K+
Sbjct: 61  DRIHSYKTSKRTRGIRCLVMVPTRELAEQIGGVFDTLSRHTKVKTFALYGGVEQDRQIKR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+LI TPGR+ D  ++G + ++N+  LV+DEAD MLD+GFI  I ++   +    
Sbjct: 121 LQDGIDILIATPGRMFDLISQGHINLDNVNTLVLDEADHMLDLGFITDIHHVKQKLVKRH 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSAT+  +++K++ + ++        +P          FV       K+     + 
Sbjct: 181 QTLFFSATINQKIKKLAFSQVKTTAIRIQISPDDPVSKNVSHFVMFVEMDDKRFF--LEN 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++     I+F   +     +  ++E+ G     IHG  DQ  R  ++  FK   I +
Sbjct: 239 FIKENPSAKIIVFVRTRVRAERVAKAMERVGIETSTIHGEKDQTLRSLVMQRFKNNEISI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D++ARG+DIP+V  V N+D+P++AENY+HR+GRTGR  + G A +  ++ + + +D
Sbjct: 299 LIATDVSARGIDIPNVDFVINYDLPDQAENYVHRVGRTGRGVKKGSAISYCSRNERERLD 358

Query: 359 AIEKLIEKKVDWLN 372
            I+  I KKV+ ++
Sbjct: 359 EIQTFINKKVEVVH 372


>gi|242782113|ref|XP_002479938.1| ATP-dependent RNA helicase , putative [Talaromyces stipitatus ATCC
           10500]
 gi|218720085|gb|EED19504.1| ATP-dependent RNA helicase , putative [Talaromyces stipitatus ATCC
           10500]
          Length = 478

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 133/405 (32%), Positives = 219/405 (54%), Gaps = 6/405 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL P++  A    GY  PT IQ + IPL LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 53  TFKDLGLIPQLCEACDTLGYKAPTAIQTEAIPLALQNRDLIGLAETGSGKTAAFALPILQ 112

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    L+L PTRELA Q+++ FE  G   ++   +L+GG+    Q   + +
Sbjct: 113 ALMD---KPQPFFGLVLAPTRELAYQISEAFEALGSTISVRSVVLVGGMDMVPQAIAIGK 169

Query: 122 GADVLICTPGRI-LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+     N     + +++ LV+DEADR+LDM F P I  I  ++P  R+T
Sbjct: 170 RPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDMDFGPIIDKILKVLPRERRT 229

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L NP R+  +  S+  +T+            K   +    L 
Sbjct: 230 FLFSATMSSKVEGLQRASLSNPLRV--SVSSNKYQTVSTLLQYYLFIPHKHKDVHLIWLL 287

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ IIF       + L       GF   A+HG + Q +R+  L  F+  +  +++
Sbjct: 288 NEHVGQSVIIFTRTVHETMRLTILARALGFGAIALHGQLSQSARLGALGKFRSRSRDILI 347

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V N+D+   ++ ++HRIGRT RAG+ GKA +LV + D++    I
Sbjct: 348 ATDVAARGLDIPSVDLVLNYDLAADSKTHVHRIGRTARAGKSGKAISLVTQYDVEVWLRI 407

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           EK +++K+     +   +    +++  AQ     +   + ++  G
Sbjct: 408 EKALDRKLPEYKVEKEEVLILSDRVAEAQRQAITELKDLDERKNG 452


>gi|221119958|ref|XP_002163544.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 53
           [Hydra magnipapillata]
          Length = 745

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 125/379 (32%), Positives = 204/379 (53%), Gaps = 5/379 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI---LEKG 66
           P+++  +    + +P+PIQ +  P++L   D  GIAQTGTGKT +F+LP           
Sbjct: 281 PEILSTIKSNNFTEPSPIQCQAWPVLLSGMDCIGIAQTGTGKTLAFLLPAFIHIDGQPIP 340

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTRELA Q+    +K+     +    + GG    AQ   + +G +++
Sbjct: 341 RDKRGGPSCLVLSPTRELAQQIEMEVKKF-HYRGIRSVCIYGGGDRSAQINLVRQGVEII 399

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D    G   + ++  LV+DEADRMLDMGF P I+ I   +   RQT++ SAT
Sbjct: 400 IGTPGRLNDLLMNGFFSVKSVTYLVLDEADRMLDMGFEPEIKKILLDIRPDRQTIMTSAT 459

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
               +Q++++ +L++P RI V +    A       V    Q+ K+  ++  +       K
Sbjct: 460 WPPGVQRMADKYLRDPIRINVGSLDLQACHSVSQLVEFIEQHEKQDRVMDFISAMAPDGK 519

Query: 247 NGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
             I +      + ++   +++     +  IHG+ DQ  R + L + K G  ++++A+D+A
Sbjct: 520 LIIFVGRKVTADDISSNLAMKGTNIGIQCIHGDRDQSDREQALEDMKTGAARVLIATDVA 579

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLDI D+ HV N+D P   E+Y+HRIGRTGRAGR G A T V +ED  H+  +  ++E
Sbjct: 580 SRGLDIKDLTHVLNYDFPRHIEDYVHRIGRTGRAGRSGCALTFVTREDWMHVAKLIPIME 639

Query: 366 KKVDWLNGDLSSLNPPLEK 384
           +    +  +L  +    +K
Sbjct: 640 EAGQEVPEELIEMAERWKK 658


>gi|126698411|ref|YP_001087308.1| putative ATP-dependent RNA helicase [Clostridium difficile 630]
 gi|306519448|ref|ZP_07405795.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-32g58]
 gi|115249848|emb|CAJ67665.1| putative ATP-dependent RNA helicase [Clostridium difficile]
          Length = 369

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 130/375 (34%), Positives = 208/375 (55%), Gaps = 6/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  LG+S   +  +  +G   PTPIQ ++I L+ +  DV   AQTGTGKT +F+LP+ 
Sbjct: 1   MDFKSLGISENTINILKKSGITTPTPIQKESIKLIKEGKDVIAEAQTGTGKTLAFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      +   + LIL PTRELA Q+ +   K  ++ ++++    GG    +Q KKL+
Sbjct: 61  ENI---SLDINDIQVLILSPTRELAIQITEEAMKLKESKDVSILAAYGGKDIGSQIKKLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH NR  + ++ ++  V+DEAD+ML MGF   ++ I       +QT
Sbjct: 118 GNIHMIIATPGRLLDHLNRKTIDLSKLKTFVLDEADQMLLMGFKNEVEAILKETSNKKQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+  +++K++  + +NP  + +     T   I            +K       + 
Sbjct: 178 LCFSATINSQVKKLAYRYTKNPVVVSIQKEEITLNNI---KQEVVETTDRKKLDALCKVL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIFC  K+ V NL  +L  +G++   +H +I Q  R +I+ +F+   IQ ++
Sbjct: 235 DEDNPFMAIIFCRTKRRVDNLEEALAIRGYNCQKLHSDIAQSKRERIMKSFRNLDIQYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI  V H++N+D+P   E+YIHRIGRTGRAG  G     +  ++ + +  I
Sbjct: 295 ATDVASRGLDISGVSHIYNYDLPETPEDYIHRIGRTGRAGEEGYTCAFIDPKNERMLSEI 354

Query: 361 EKLIEKKVDWLNGDL 375
           E  IE K+     +L
Sbjct: 355 ETAIESKISRRIIEL 369


>gi|254974450|ref|ZP_05270922.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-66c26]
 gi|255091842|ref|ZP_05321320.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP
           107932]
 gi|255099944|ref|ZP_05328921.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-63q42]
 gi|255305833|ref|ZP_05350005.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC
           43255]
 gi|255313577|ref|ZP_05355160.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-76w55]
 gi|255516261|ref|ZP_05383937.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-97b34]
 gi|255649358|ref|ZP_05396260.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-37x79]
 gi|260682530|ref|YP_003213815.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260686129|ref|YP_003217262.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
 gi|260208693|emb|CBA61492.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260212145|emb|CBE02789.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
          Length = 375

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 130/375 (34%), Positives = 208/375 (55%), Gaps = 6/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  LG+S   +  +  +G   PTPIQ ++I L+ +  DV   AQTGTGKT +F+LP+ 
Sbjct: 7   MDFKSLGISENTINILKKSGITTPTPIQKESIKLIKEGKDVIAEAQTGTGKTLAFLLPIF 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      +   + LIL PTRELA Q+ +   K  ++ ++++    GG    +Q KKL+
Sbjct: 67  ENI---SLDINDIQVLILSPTRELAIQITEEAMKLKESKDVSILAAYGGKDIGSQIKKLK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH NR  + ++ ++  V+DEAD+ML MGF   ++ I       +QT
Sbjct: 124 GNIHMIIATPGRLLDHLNRKTIDLSKLKTFVLDEADQMLLMGFKNEVEAILKETSNKKQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+  +++K++  + +NP  + +     T   I            +K       + 
Sbjct: 184 LCFSATINSQVKKLAYRYTKNPVVVSIQKEEITLNNI---KQEVVETTDRKKLDALCKVL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIFC  K+ V NL  +L  +G++   +H +I Q  R +I+ +F+   IQ ++
Sbjct: 241 DEDNPFMAIIFCRTKRRVDNLEEALAIRGYNCQKLHSDIAQSKRERIMKSFRNLDIQYLI 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI  V H++N+D+P   E+YIHRIGRTGRAG  G     +  ++ + +  I
Sbjct: 301 ATDVASRGLDISGVSHIYNYDLPETPEDYIHRIGRTGRAGEEGYTCAFIDPKNERMLSEI 360

Query: 361 EKLIEKKVDWLNGDL 375
           E  IE K+     +L
Sbjct: 361 ETAIESKISRRIIEL 375


>gi|319763758|ref|YP_004127695.1| dead/deah box helicase domain protein [Alicycliphilus denitrificans
           BC]
 gi|330823978|ref|YP_004387281.1| DEAD/DEAH box helicase domain-containing protein [Alicycliphilus
           denitrificans K601]
 gi|317118319|gb|ADV00808.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           BC]
 gi|329309350|gb|AEB83765.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           K601]
          Length = 480

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 162/370 (43%), Positives = 219/370 (59%), Gaps = 8/370 (2%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
           + L L+  +  AV D GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L  L
Sbjct: 6   STLALAEPLKRAVADMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRL 65

Query: 64  EKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            K       P        +L PTRELA QVA     Y K   L   ++ GG+  + Q  +
Sbjct: 66  LKHENSSASPARHPVRALVLLPTRELADQVAQQIAMYAKYTKLRSTVVFGGMDMKPQTAE 125

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G +VL+ TPGR+LDH      ++N +E +V+DEADRMLD+GF+P +Q I S +P  R
Sbjct: 126 LKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQR 185

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            TLLFSAT + E+++++ ++LQ+P  IEV  P+   ET        ++          + 
Sbjct: 186 TTLLFSATFSPEIKRLAGSYLQDPVTIEVARPN---ETASTVEQRFFSVQDDDKRRAIRH 242

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + ++  +K   IF N K     L  SLE+ G    A+HG+  Q  R+K L  FK G + L
Sbjct: 243 VLTERGLKQAFIFVNSKLGCARLARSLERDGLKTAALHGDKSQDERLKALEAFKSGDVDL 302

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V +D+AARGLDI DV  VFN DVP  AE+Y+HRIGRTGRAG  G A TLV   D + + 
Sbjct: 303 LVCTDVAARGLDIKDVPAVFNHDVPFNAEDYVHRIGRTGRAGASGLAVTLVGSGDARLVA 362

Query: 359 AIEKLIEKKV 368
            IEKLI+KKV
Sbjct: 363 DIEKLIKKKV 372


>gi|168011049|ref|XP_001758216.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690672|gb|EDQ77038.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 414

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 196/378 (51%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAG-YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F  +GL   ++  +   G + KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L
Sbjct: 41  TFDVMGLHENLLRGIYAYGSFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCSGIL 100

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    ++   + L+L PTRELA Q+       G    + V   +GG       + L+
Sbjct: 101 QQLDY---QLLECQALVLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTSVREDQRILQ 157

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  V++ TPGR+ D   R  L  ++I+  V+DEAD ML  GF   I +I  L+P   Q 
Sbjct: 158 AGVHVVVGTPGRVYDMLRRNALRADSIKCFVLDEADEMLSRGFKDQIYDIFQLLPQKLQV 217

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSATM  E  +++  F+  P +I V     T E I+  +V    +  K   L      
Sbjct: 218 GVFSATMPPEALEITRKFMNKPVKILVKRDELTLEGIKQFYVNVDREEWKLDTLCDL--Y 275

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++
Sbjct: 276 ETLAITQSVIFINTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 335

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V ++D + +  I
Sbjct: 336 TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLQDI 395

Query: 361 EKLIEKKVDWLNGDLSSL 378
           +K     ++ L  +++ L
Sbjct: 396 QKFYNTVIEELPSNVADL 413


>gi|330838649|ref|YP_004413229.1| DEAD/DEAH box helicase domain protein [Selenomonas sputigena ATCC
           35185]
 gi|329746413|gb|AEB99769.1| DEAD/DEAH box helicase domain protein [Selenomonas sputigena ATCC
           35185]
          Length = 446

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 134/453 (29%), Positives = 220/453 (48%), Gaps = 14/453 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F++L     +V A+   G  + T +Q + IP V    D    AQTGTGKT +F+LP+L
Sbjct: 1   MNFSELHCPEVLVDALARQGIREATLVQEQAIPAVRSGRDAIVQAQTGTGKTLAFLLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++      +    L++ PTRELA Q A   +       +  AL+ GG   E Q  KL 
Sbjct: 61  ERIKGNARVAQA---LVVSPTRELAMQTARVAKTLADAVGIRTALVYGGQDIERQKDKLR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++I TPGR+LDH  R  + ++ +  +V+DEAD ++ +GF+  ++ +   +    Q 
Sbjct: 118 QKPQLIIATPGRLLDHLRRHSVELSQVNKIVLDEADELMRLGFVEDVETMLEALAGDHQL 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM + ++ ++  +++ P+ I V     T   IE                    L 
Sbjct: 178 MLFSATMPERIRALTRRYMKEPREITVQPECVTLANIEQ---VIVDTREDTKLDKLCELL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      ++FC+ K+ V ++   L  +G+ V  +HG++ Q  R  ++  F+E  +Q++V
Sbjct: 235 NKYQPYLAMVFCHTKQKVAHVTLELAGRGYLVDELHGDLTQTQRNLVMRRFREAKLQILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARGLDI  V HVFN+D+P   E YIHRIGRTGRAG  G A T V       +  I
Sbjct: 295 VTDIAARGLDIEGVTHVFNYDLPQDTEWYIHRIGRTGRAGAKGLAVTFVNAHQYDQLRRI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK----IDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           E  I+ ++     + S       K       A+  +A K    P KS    +R K     
Sbjct: 355 EAGIKARLTKEKSERSGGKNVRRKTAAKAAAAKQENADKERTAPAKSAPPPKRGKAAQRA 414

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNM 449
           +     +     ++ +   + N     G R ++
Sbjct: 415 RRVAKKRVGRPAARSKSGTKTN----AGRRSHL 443


>gi|322509533|gb|ADX04987.1| Putative ATP-dependent RNA helicase [Acinetobacter baumannii
           1656-2]
          Length = 561

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 133/382 (34%), Positives = 213/382 (55%), Gaps = 11/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP L 
Sbjct: 8   TFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLH 67

Query: 62  I---------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                      ++    V  P  L+L PTRELA QV+ +   + ++        I G   
Sbjct: 68  NLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 127

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             +  +  +GA V++ TPGR+LD  NR +L ++ ++ L++DEADRMLD+GF   ++ I+ 
Sbjct: 128 FGKQIQQLKGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISD 187

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L     QTL+FSAT  D + +++E  +  P+RI + T  ST   I      T     K  
Sbjct: 188 LAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHK-- 245

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L     + +T+   ++F + +++   L   L + G SV A+HG + Q  R + L + +
Sbjct: 246 KKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIR 305

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL    
Sbjct: 306 EGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYR 365

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
           +   I A+E  +E +++    +
Sbjct: 366 ERGKIRALEDYLEARLNVSEIE 387


>gi|302338831|ref|YP_003804037.1| DEAD/DEAH box helicase [Spirochaeta smaragdinae DSM 11293]
 gi|301636016|gb|ADK81443.1| DEAD/DEAH box helicase domain protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 542

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 219/388 (56%), Gaps = 9/388 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F DLGLS + + A++  G+ +PT IQ +TIP++L    ++   AQTGTGKTA+F LP+L
Sbjct: 6   TFQDLGLSQETLDAIVKKGFEEPTTIQARTIPVMLHSDANIIAQAQTGTGKTAAFGLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++     V+    L+L PTRELA QV++    +  +  + +  + GG   + Q ++L+
Sbjct: 66  DLVDPVSRTVQA---LVLVPTRELAIQVSEEINSFRGSKKVRIVPIYGGQSIDQQLRRLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGRI+DH NR  L +  I  L++DEAD ML+MGFI  ++ I       ++T
Sbjct: 123 QGVQIVVGTPGRIIDHLNRKTLNLTAISHLILDEADEMLNMGFIDEMEEILKHTNPDKRT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D+++K++ ++++  + I V     T    E  +    A    +       ++
Sbjct: 183 LLFSATMPDKIKKLANDYMEGYELIAVEKEQLTTNLTEQIYFEVKASDKFEALCRIIDIE 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  G++FC  K +V  + + L  +G+    +HG+I Q  R + L  FK   I ++V
Sbjct: 243 DSFY---GLVFCRTKNDVDTVVNHLLDRGYDAAPLHGDISQAQRERTLGKFKRQNINILV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HV N+ +P   E Y+HRIGRTGRAG  G A T +   + K +  I
Sbjct: 300 ATDVAARGIDVNNLTHVINYSLPQDPEAYVHRIGRTGRAGNEGTAITFITPSEYKRLMFI 359

Query: 361 EKLIEKKVDW--LNGDLSSLNPPLEKID 386
            K+ +  +    L      ++   +KID
Sbjct: 360 RKITKTDIKKSQLPKVADIIDAKRKKID 387


>gi|332856302|ref|ZP_08436187.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013150]
 gi|332727108|gb|EGJ58577.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013150]
          Length = 475

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 133/382 (34%), Positives = 213/382 (55%), Gaps = 11/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP L 
Sbjct: 4   TFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLH 63

Query: 62  I---------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                      ++    V  P  L+L PTRELA QV+ +   + ++        I G   
Sbjct: 64  NLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             +  +  +GA V++ TPGR+LD  NR +L ++ ++ L++DEADRMLD+GF   ++ I+ 
Sbjct: 124 FGKQIQQLKGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISD 183

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L     QTL+FSAT  D + +++E  +  P+RI + T  ST   I      T     K  
Sbjct: 184 LAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHK-- 241

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L     + +T+   ++F + +++   L   L + G SV A+HG + Q  R + L + +
Sbjct: 242 KKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIR 301

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL    
Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYR 361

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
           +   I A+E  +E +++    +
Sbjct: 362 ERGKIRALEDYLEARLNVSEIE 383


>gi|239503259|ref|ZP_04662569.1| Cold-shock DEAD box protein A(ATP-dependent RNA helicasedeaD)
           [Acinetobacter baumannii AB900]
          Length = 586

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 133/382 (34%), Positives = 213/382 (55%), Gaps = 11/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP L 
Sbjct: 4   TFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLH 63

Query: 62  I---------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                      ++    V  P  L+L PTRELA QV+ +   + ++        I G   
Sbjct: 64  NLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             +  +  +GA V++ TPGR+LD  NR +L ++ ++ L++DEADRMLD+GF   ++ I+ 
Sbjct: 124 FGKQIQQLKGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISD 183

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L     QTL+FSAT  D + +++E  +  P+RI + T  ST   I      T     K  
Sbjct: 184 LAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHK-- 241

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L     + +T+   ++F + +++   L   L + G SV A+HG + Q  R + L + +
Sbjct: 242 KKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIR 301

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL    
Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYR 361

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
           +   I A+E  +E +++    +
Sbjct: 362 ERGKIRALEDYLEARLNVSEIE 383


>gi|215482158|ref|YP_002324340.1| Cold-shock DEAD box protein A(ATP-dependent RNA helicasedeaD)
           [Acinetobacter baumannii AB307-0294]
 gi|332868649|ref|ZP_08438296.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013113]
 gi|213986281|gb|ACJ56580.1| Cold-shock DEAD box protein A(ATP-dependent RNA helicasedeaD)
           [Acinetobacter baumannii AB307-0294]
 gi|332733221|gb|EGJ64416.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013113]
          Length = 586

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 133/382 (34%), Positives = 213/382 (55%), Gaps = 11/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP L 
Sbjct: 4   TFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLH 63

Query: 62  I---------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                      ++    V  P  L+L PTRELA QV+ +   + ++        I G   
Sbjct: 64  NLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             +  +  +GA V++ TPGR+LD  NR +L ++ ++ L++DEADRMLD+GF   ++ I+ 
Sbjct: 124 FGKQIQQLKGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISD 183

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L     QTL+FSAT  D + +++E  +  P+RI + T  ST   I      T     K  
Sbjct: 184 LAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHK-- 241

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L     + +T+   ++F + +++   L   L + G SV A+HG + Q  R + L + +
Sbjct: 242 KKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIR 301

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL    
Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYR 361

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
           +   I A+E  +E +++    +
Sbjct: 362 ERGKIRALEDYLEARLNVSEIE 383


>gi|184159623|ref|YP_001847962.1| superfamily II DNA/RNA helicase [Acinetobacter baumannii ACICU]
 gi|332876108|ref|ZP_08443892.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6014059]
 gi|183211217|gb|ACC58615.1| Superfamily II DNA and RNA helicase [Acinetobacter baumannii ACICU]
 gi|332735726|gb|EGJ66769.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6014059]
          Length = 615

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 133/382 (34%), Positives = 213/382 (55%), Gaps = 11/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP L 
Sbjct: 4   TFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLH 63

Query: 62  I---------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                      ++    V  P  L+L PTRELA QV+ +   + ++        I G   
Sbjct: 64  NLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             +  +  +GA V++ TPGR+LD  NR +L ++ ++ L++DEADRMLD+GF   ++ I+ 
Sbjct: 124 FGKQIQQLKGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISD 183

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L     QTL+FSAT  D + +++E  +  P+RI + T  ST   I      T     KK 
Sbjct: 184 LAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKK 243

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                   + +T+   ++F + +++   L   L + G SV A+HG + Q  R + L + +
Sbjct: 244 L--LTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIR 301

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL    
Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYR 361

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
           +   I A+E  +E +++    +
Sbjct: 362 ERGKIRALEDYLEARLNVSEIE 383


>gi|169794570|ref|YP_001712363.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AYE]
 gi|260557002|ref|ZP_05829219.1| DEAD/DEAH box helicase [Acinetobacter baumannii ATCC 19606]
 gi|169147497|emb|CAM85358.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AYE]
 gi|260409608|gb|EEX02909.1| DEAD/DEAH box helicase [Acinetobacter baumannii ATCC 19606]
          Length = 619

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 133/382 (34%), Positives = 213/382 (55%), Gaps = 11/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP L 
Sbjct: 8   TFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLH 67

Query: 62  I---------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                      ++    V  P  L+L PTRELA QV+ +   + ++        I G   
Sbjct: 68  NLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 127

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             +  +  +GA V++ TPGR+LD  NR +L ++ ++ L++DEADRMLD+GF   ++ I+ 
Sbjct: 128 FGKQIQQLKGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISD 187

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L     QTL+FSAT  D + +++E  +  P+RI + T  ST   I      T     KK 
Sbjct: 188 LAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKK 247

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                   + +T+   ++F + +++   L   L + G SV A+HG + Q  R + L + +
Sbjct: 248 L--LTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIR 305

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL    
Sbjct: 306 EGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYR 365

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
           +   I A+E  +E +++    +
Sbjct: 366 ERGKIRALEDYLEARLNVSEIE 387


>gi|126643119|ref|YP_001086103.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii ATCC
           17978]
 gi|213158859|ref|YP_002320857.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057]
 gi|126389003|gb|ABO13501.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii ATCC
           17978]
 gi|213058019|gb|ACJ42921.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057]
          Length = 615

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 133/382 (34%), Positives = 213/382 (55%), Gaps = 11/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+  L   +  A+   G+  PTP+Q ++IP  L+  D+   +QTG+GKTA+F+LP L 
Sbjct: 4   TFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLH 63

Query: 62  I---------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                      ++    V  P  L+L PTRELA QV+ +   + ++        I G   
Sbjct: 64  NLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             +  +  +GA V++ TPGR+LD  NR +L ++ ++ L++DEADRMLD+GF   ++ I+ 
Sbjct: 124 FGKQIQQLKGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISD 183

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L     QTL+FSAT  D + +++E  +  P+RI + T  ST   I      T     KK 
Sbjct: 184 LAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKK 243

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                   + +T+   ++F + +++   L   L + G SV A+HG + Q  R + L + +
Sbjct: 244 L--LTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIR 301

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL    
Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYR 361

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
           +   I A+E  +E +++    +
Sbjct: 362 ERGKIRALEDYLEARLNVSEIE 383


>gi|3047117|gb|AAC13628.1| similar to ATP-dependent RNA helicases [Arabidopsis thaliana]
 gi|7267405|emb|CAB80875.1| putative RNA helicase [Arabidopsis thaliana]
          Length = 499

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 108/375 (28%), Positives = 190/375 (50%), Gaps = 13/375 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P+L 
Sbjct: 132 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLE 191

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++    ++            +    +   ++ GK+  + V +  GG   +    +L +
Sbjct: 192 KIDQDNNVIQGNC---------VLDHTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQ 242

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P ++++ S +P +RQ L
Sbjct: 243 PVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQIL 302

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++   + FL NP  I          T++           ++       L S
Sbjct: 303 MFSATFPVTVKDFKDRFLTNPYVI----NLMDELTLKGITQFYAFVEERQKIHCLNTLFS 358

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 359 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 418

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 419 TDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 478

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 479 QELGTEIKQIPPHID 493


>gi|297578974|ref|ZP_06940902.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
 gi|297536568|gb|EFH75401.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
          Length = 398

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 151/403 (37%), Positives = 229/403 (56%), Gaps = 7/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V  V   GY KPT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YGK+  L    + GG+  +AQ ++L
Sbjct: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  +++P  I +    ++   I    +                 
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 238 INEQQWVQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           IE  +   ++     +     P + + I+  N+  K+   PQ+
Sbjct: 358 IESRLGHLIER---RVVEGFEPKKPVPISILNYVPKHKRAPQE 397


>gi|327540357|gb|EGF26943.1| cold-shock deAd box protein a [Rhodopirellula baltica WH47]
          Length = 862

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 145/371 (39%), Positives = 227/371 (61%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L  +V  AV  +GY KPTPIQ + IP +L   DV   +QTGTGKTA+F LP+L+ 
Sbjct: 237 FRDLDLRAEVQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPILSR 296

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           ++    R R P+ L+L PTRELA QVA +F KYG +     VA + GG  +E Q K+L R
Sbjct: 297 VDV---RSRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRR 353

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L + +++ LV+DEAD ML+MGF+  +Q +    P  RQ  
Sbjct: 354 GVQVVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQVA 413

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++K+++ +L +P RI + + + TA ++    +       +        +  
Sbjct: 414 LFSATLPKPIRKIADEYLNDPARITIKSKTITAASVRQRALFVSP---RDKIDALTRILE 470

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I+F   K + +++   L +QGFS  A++G++ Q+ R + +   K G + ++VA
Sbjct: 471 VEETDGVIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVA 530

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFNFD+P+ +E+Y+HRIGRTGRAGR G+A   +     + +  IE
Sbjct: 531 TDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQLRFIE 590

Query: 362 KLIEKKVDWLN 372
              ++ ++ ++
Sbjct: 591 NTTKQPIEIID 601


>gi|32475237|ref|NP_868231.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
 gi|32445778|emb|CAD78509.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
          Length = 931

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 145/371 (39%), Positives = 227/371 (61%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L  +V  AV  +GY KPTPIQ + IP +L   DV   +QTGTGKTA+F LP+L+ 
Sbjct: 306 FRDLDLRAEVQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPILSR 365

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           ++    R R P+ L+L PTRELA QVA +F KYG +     VA + GG  +E Q K+L R
Sbjct: 366 VDV---RSRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRR 422

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR++DH  RG L + +++ LV+DEAD ML+MGF+  +Q +    P  RQ  
Sbjct: 423 GVQVVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQVA 482

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++K+++ +L +P RI + + + TA ++    +       +        +  
Sbjct: 483 LFSATLPKPIRKIADEYLNDPARITIKSKTITAASVRQRALFVSP---RDKIDALTRILE 539

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I+F   K + +++   L +QGFS  A++G++ Q+ R + +   K G + ++VA
Sbjct: 540 VEETDGVIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVA 599

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+P + HVFNFD+P+ +E+Y+HRIGRTGRAGR G+A   +     + +  IE
Sbjct: 600 TDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQLRFIE 659

Query: 362 KLIEKKVDWLN 372
              ++ ++ ++
Sbjct: 660 NTTKQPIEIID 670


>gi|154342919|ref|XP_001567405.1| ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134064737|emb|CAM42842.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 604

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 123/393 (31%), Positives = 198/393 (50%), Gaps = 16/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA +GLSP +   V    Y KPTP+Q   IP VL+  D+   AQTG+GKTA++++P + 
Sbjct: 126 SFATMGLSPALAENVSRCRYQKPTPVQKYGIPCVLKGSDLMACAQTGSGKTAAYLIPAIN 185

Query: 62  ILEKGRARVRMPRTL-------ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +         P          +L PTREL+ Q+ +   K+     +   ++ GG     
Sbjct: 186 FMLVNNLNRAKPTNSQSAPSALVLSPTRELSIQIYEEGRKFTYRTGIRCVVVYGGADPRH 245

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  +L RG  +L+ TPGR+ D F RG    +++  LV+DEADRMLDMGF P I+ I    
Sbjct: 246 QIHELTRGCGLLVATPGRLSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRAIVQGP 305

Query: 175 PFTRQTLL------FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
                         +SAT   E+Q+++  FL     ++V    ST E I           
Sbjct: 306 DSDMPPPGERQTLLYSATFPKEIQQMAREFLYRHYFLQVGRVGSTTENITQDVRWVEDMD 365

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            +        +  +   +  ++F  +K++   L   L +      +IHG+  QR R + L
Sbjct: 366 KR---GCLLEVLKEHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEAL 422

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             FK G  +++VA+D+A+RGLDIP+V  V  +D+P+  ++Y+HRIGRTGRAG+ G A + 
Sbjct: 423 DIFKSGVCRVLVATDVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGRTGRAGKRGTAISF 482

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
             +++   +D +  L+ +    +  ++ +L   
Sbjct: 483 FNEKNRNVVDDLIPLLRETNQTVLPEVQALAKK 515


>gi|94265120|ref|ZP_01288885.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93454407|gb|EAT04705.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 369

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 132/368 (35%), Positives = 204/368 (55%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA       +   +   GY  PTPIQ + IP + +  D+ G+AQTGTGKTA+FVLP+L
Sbjct: 1   MSFAQFDFDATLTANIAACGYQAPTPIQTQAIPEIRRGRDIMGLAQTGTGKTAAFVLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  G       R +I+ PTRELA Q+  N  + G+   +    + GG+    Q K  +
Sbjct: 61  QKLSAGPR--GRVRAVIVAPTRELAEQIHVNIGELGRQTGIRSVAVYGGVSKFGQLKAFK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G ++++  PGR+LDH +   + +  +E+LV+DEAD M DMGF+P I+ +   +P  RQ 
Sbjct: 119 AGVEIIVACPGRLLDHLDSRDVNLGAVEMLVLDEADMMFDMGFMPAIKKLLKYLPAKRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++ ++++ L++P R+++N      +         Y    +    L + + 
Sbjct: 179 LLFSATMPAEIRHLADSILKDPARVQIN----HTQPTALVAHKLYRVEKQGKGALLKQVM 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F   K     L  +LEK G    A+ GN+ Q  R   +  FK+G   +MV
Sbjct: 235 QESAFSSALVFTRTKHAAKKLALNLEKAGHRAVALQGNMSQNKRKAAMEGFKQGRFNIMV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+D+P   E Y HRIGRTGRA R+G+A+T    ED   +  I
Sbjct: 295 ATDIAARGIDVAGISHVINYDMPATVEAYTHRIGRTGRAERNGEAYTFATAEDKVIVRQI 354

Query: 361 EKLIEKKV 368
           E+ I  ++
Sbjct: 355 ERAIGSQM 362


>gi|224065635|ref|XP_002301895.1| predicted protein [Populus trichocarpa]
 gi|222843621|gb|EEE81168.1| predicted protein [Populus trichocarpa]
          Length = 1112

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 133/448 (29%), Positives = 224/448 (50%), Gaps = 12/448 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            +   GL+ K++  +    Y KP  IQ + +P+++   D  GIA+TG+GKT +FVLPM  
Sbjct: 473 TWHQTGLTSKILETIKKLNYEKPMTIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLR 532

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P  L++ PTREL  Q+  + +K+ K  ++    + GG     Q  +L
Sbjct: 533 HIKDQPPVEAGEGPIGLVMAPTRELVQQIHSDIKKFAKALSIRCVPVYGGSGVAQQISEL 592

Query: 120 ERGADVLICTPGRILDHFNR---GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RG ++++CTPGR++D           +  +  LV+DEADRM DMGF P I  I   +  
Sbjct: 593 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 652

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT   +++ ++   L  P  I+V   S   + I            ++   L 
Sbjct: 653 DRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLV--ELRTEDQRWLRLL 710

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL         +IF   +    +L  +L K G+   ++HG  DQ  R   +S+FK    
Sbjct: 711 ELLGEWYQKGKILIFVQSQDKCDSLFRNLLKFGYPCLSLHGAKDQTDRESTISDFKTNVC 770

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            LM+A+ +AARGLD+ D+  V N+D PN  E+Y+HR+GRTGRAGR G A T ++++D ++
Sbjct: 771 NLMIATSVAARGLDVKDLELVINYDAPNHYEDYVHRVGRTGRAGRKGCAITFISEDDARY 830

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA-RKNNPIPQKSTGFDRRKKNYSS 415
              + K +E     +  DL +L        +A+ N    + +      +GF   ++    
Sbjct: 831 APDLVKALELSEQVVPQDLKALADGF----MAKVNQGLEQAHGTGYGGSGFKFNEEEDEK 886

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSL 443
           + +    +  E   + ++   E++ + +
Sbjct: 887 RMAAKKAQAKEYGYEDEKSDSEDEDEVV 914


>gi|71665094|ref|XP_819521.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70884825|gb|EAN97670.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 511

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 133/426 (31%), Positives = 226/426 (53%), Gaps = 5/426 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL  +++ A  +AG+  PT IQ  TIP+V +  D+ G+AQTG+GKT ++VLP++ 
Sbjct: 38  SFKALGLCEELISACAEAGWQNPTRIQAATIPVVKEGRDIIGVAQTGSGKTGAYVLPLVN 97

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   +++V     L++ PTRELA QV   F   G +  L VA L+GG     Q  +L +
Sbjct: 98  WLLT-QSKVPYLSVLVMVPTRELAQQVTAQFVMLGHSVGLRVATLVGGADMVDQACELSK 156

Query: 122 GADVLICTP-GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TP        N     +  +  LV+DEAD+MLDM +   I  I   +P +RQT
Sbjct: 157 RPHVVVGTPGRIKDHLQNTKGFQLVKLHALVLDEADKMLDMDYEKEIDAILEHLPHSRQT 216

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+  ++ ++ +  L +P  +EV+  ++T +T++  +V        +      L  
Sbjct: 217 MLFSATLNTKIDRLQKASLNDPVLLEVHRKNTTVDTLKQYYVFCPFA---QMLPYLHLYL 273

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++T  + ++FC     V  +  +L   G     + G +DQ +R   L+ FKEG ++++V
Sbjct: 274 TRETGNHILVFCRSAALVHRITLTLRILGHQALPLMGRMDQTNRNIALTKFKEGKVRILV 333

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A RGLDI     V N+ +P+R E+YIHR+GRT RAG  GKA  ++++ DI  +  I
Sbjct: 334 CTDVAQRGLDISHTDVVVNYALPDRVEDYIHRVGRTARAGAQGKAVNIISQYDILLLQRI 393

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E     K +        +   L++++ A+    ++     Q+S      ++  +++K   
Sbjct: 394 EATTGVKCEEWPVQEGDVAAVLQRVEDAEQETIKEIRENEQESKFEKEVRQLVTAKKGKR 453

Query: 421 PLKESE 426
              E +
Sbjct: 454 ERGEGD 459


>gi|302795308|ref|XP_002979417.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
 gi|300152665|gb|EFJ19306.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
          Length = 749

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 141/439 (32%), Positives = 224/439 (51%), Gaps = 6/439 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L +S  ++ A    GY +PTPIQ   IPL L   D+CG A TG+GKTA+F LP+L 
Sbjct: 118 SFIELNVSRPLLRACDALGYRQPTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPILE 177

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     R+   R LI+ PTRELA Q+    EK  +  ++  +L++GG+  + Q   L  
Sbjct: 178 RLLFRPRRIPAIRVLIITPTRELAVQLHSMIEKLAQFTDIRCSLVVGGLSSKVQEVALRT 237

Query: 122 GADVLICTP-GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D+++ TP   I    N   + +  + ILV+DEADR+L++GF   I  +  L P  RQT
Sbjct: 238 HPDIVVATPGRMIDHLRNTQSVGLEELAILVLDEADRLLELGFREEIHELVKLCPSRRQT 297

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTDE+ ++ +  L++P R+  +  +    T+    +   A +      +   L 
Sbjct: 298 MLFSATMTDEVSELIKLSLKSPVRLSADPSTERPSTLTEEVIRIRAGHEGDKEAIVLSLC 357

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+      IIF   K     L       G     +HGN+ Q  R++ L  F++  +  ++
Sbjct: 358 SRSLKSKTIIFSGTKVEAHRLKILFGLSGLKSAELHGNLTQAQRLEALEAFRKQEVDFLI 417

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V N + P   + Y+HR+GRT RAGRHG++ TL+ ++D   + A+
Sbjct: 418 ATDVAARGLDIIGVESVINLECPKEIKTYVHRVGRTARAGRHGRSVTLMTEQDRLLLKAV 477

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKI-----DIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            K    K+       +S+    E+I     D+ Q     +     +K+     + +N   
Sbjct: 478 AKRAGSKLQKRVVAATSIASWRERIEKMEEDLVQILQQEREEKFLRKAEMEANKAQNMMD 537

Query: 416 QKSHIPLKESEKISKLQQD 434
            ++ I  +  +   + QQD
Sbjct: 538 YEAEIFARPKKTWFQSQQD 556


>gi|298369527|ref|ZP_06980844.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298282084|gb|EFI23572.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 456

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 149/371 (40%), Positives = 229/371 (61%), Gaps = 9/371 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ FA LGL  ++V A+ + GY  PTPIQ   IP  L  HD+   AQTGTGKTA+F+LP 
Sbjct: 1   MNPFASLGLGSEIVSALTEQGYETPTPIQTAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 60

Query: 60  LTILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           L  L++       P        +L PTRELA Q+  N + Y KN  L   +L GG+  + 
Sbjct: 61  LERLKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDK 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  G ++++ T GR+LDH  +  + +N +EI+V+DEADRMLDMGFI  I+ I  ++
Sbjct: 121 QTADLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQML 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQTLLFSAT    ++K++++F+  P+ +EV   ++T+  +E   +A  A   +    
Sbjct: 181 PKQRQTLLFSATFAPPIRKLAKDFMNAPEIVEVAAQNTTSSNVEQHIIAVDALKKRNL-- 238

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             + L     M   I+FC  K++V  +   L ++  +  +IHG+  Q+SR++ L+ FKEG
Sbjct: 239 -LERLIVDLQMNQVIVFCKTKQSVDQVTRDLVRRNLAAQSIHGDKSQQSRLETLNAFKEG 297

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           +++++VA+D+AARGLDI ++  V N+++P + E+Y+HRIGRTGRAG  G A +L+ K + 
Sbjct: 298 SLRVLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQ 357

Query: 355 KHIDAIEKLIE 365
           K  +AI++L  
Sbjct: 358 KMFEAIKELTG 368


>gi|194440585|dbj|BAG65665.1| vasa [Gryllus bimaculatus]
          Length = 650

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 112/382 (29%), Positives = 187/382 (48%), Gaps = 8/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + GL   V+  +  +GY KPTPIQ   IP+++   D+   AQTG+GKTA+F+LP++ +
Sbjct: 216 FENSGLRQFVLDNIKKSGYAKPTPIQKHAIPIIMSGRDLMACAQTGSGKTAAFLLPIINV 275

Query: 63  LEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           L               P  +I+ PTREL  Q+     K+     +   +  GG     Q 
Sbjct: 276 LLSDPRDLILTAEHCEPHAIIVSPTRELTLQIYSEARKFAHGSIIKAVVTYGGTAAYHQA 335

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +++ +G  +L+ TPGR+LD  NRG++   ++  +V+DEADRMLDMGF+P I+ + +    
Sbjct: 336 QQVMKGCHILVATPGRLLDFVNRGRISFASVRFVVLDEADRMLDMGFMPDIEKMMNHPTM 395

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
                  +   +    +  +          +                 + Q ++     +
Sbjct: 396 VPTGERQTLMSSATFPEEIQRLAGKFLSDYLFVAVGIVGGACTDVDQKFYQVTRFEKRPK 455

Query: 237 QLL-QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +    ++     ++F   K+    +   L +Q F   +IHG+  QR R + L++FK G 
Sbjct: 456 LVELLKEEGGDKTLVFVEMKRTADFIAAYLSEQNFPTTSIHGDRMQREREEALADFKSGQ 515

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DI 354
           + ++VA+ +AARGLDI +V HV N+D+P   + Y+HRIGRTGR G  GKA +    E D 
Sbjct: 516 MTILVATAVAARGLDIKNVAHVVNYDLPKSIDEYVHRIGRTGRVGNRGKATSFYDPEADA 575

Query: 355 KHIDAIEKLIEKKVDWLNGDLS 376
                + K++ +    +   L 
Sbjct: 576 PIARDLVKILNQAEQPVPEWLE 597


>gi|170719840|ref|YP_001747528.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida W619]
 gi|169757843|gb|ACA71159.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 439

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 147/374 (39%), Positives = 217/374 (58%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+FA LGL   ++  +    Y  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MNFAKLGLIEPLLRTLQQLDYTTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV +N  +Y +N  L+   + GG+    Q  +
Sbjct: 61  QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+LD F +  +  N ++ LV+DEADRMLD+GF   +Q++ + +P  R
Sbjct: 121 LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D+++ ++   L +P  IEV+  ++ A T++   V    +           
Sbjct: 181 QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNAAATTVKQWLVPVDKKRKVDLFCHLLR 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            Q     K  ++F   +  V  L   L  +G +   IHG+  Q +R + L +FK   IQ+
Sbjct: 241 KQRW---KQVLVFAKTRNGVDQLVERLLGEGVNADGIHGDRPQATRQRALDSFKAREIQV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQQLA 357

Query: 359 AIEKLIEKKVDWLN 372
            IE LI + +    
Sbjct: 358 TIETLIRQTLPRHE 371


>gi|50303057|ref|XP_451466.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660682|sp|Q6CX73|FAL1_KLULA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49640597|emb|CAH03054.1| KLLA0A10659p [Kluyveromyces lactis]
          Length = 398

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 106/378 (28%), Positives = 177/378 (46%), Gaps = 3/378 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P ++  +   G+  P+ IQ + I  ++   DV   AQ+GTGKTA+F + +L 
Sbjct: 24  TFESMNLKPDLLRGIYFYGFEYPSSIQSRAISQIISGKDVIAQAQSGTGKTATFTIGLLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++    L+L PTRELA+Q        G   N+T     GG   +   KK+ +
Sbjct: 84  AIDSKSKELQA---LVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSK 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+  TPGR+LD   R  L + N +ILV+DEAD +L        Q             
Sbjct: 141 NCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQ 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +   + T     +          +++                   +  +        L  
Sbjct: 201 VVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYD 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN +K V  L   L +  FSV ++HG++ Q  R +++++F+ G  +++++
Sbjct: 261 SLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLIS 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  +  V N+D+P+  ENYIHRIGR+GR GR G A   + KE+   +  IE
Sbjct: 321 TDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIE 380

Query: 362 KLIEKKVDWLNGDLSSLN 379
                K+     +L  L+
Sbjct: 381 SHYRIKIKPTPANLEELS 398


>gi|183979315|dbj|BAG30754.1| DEAD box polypeptide 5 [Papilio xuthus]
          Length = 539

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 128/381 (33%), Positives = 212/381 (55%), Gaps = 5/381 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--L 60
           F +      V+  + + GY +PTPIQ +  P+ +  H++ GIAQTG+GKT +++LP    
Sbjct: 109 FEEGNFPDYVMQNISNMGYKEPTPIQAQGWPIAMSGHNLVGIAQTGSGKTLAYILPAIVH 168

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +    R   P  L+L PTRELA Q+      +G    +    + GG P   Q + LE
Sbjct: 169 INNQPPIRRGDGPIALVLAPTRELAQQIQQVACDFGNASYVRNTCVFGGAPKREQARDLE 228

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 229 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT 288

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL---QQ 237
           L++SAT   E++K++E++L +  +I + +   +A       V    ++ K+  L    Q+
Sbjct: 289 LMWSATWPKEVKKLAEDYLGDYLQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQE 348

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + QSQ+     IIF   K+ V N+  ++ + G+    +HG+  Q+ R  +L  FK+G   
Sbjct: 349 IGQSQEPGAKTIIFVETKRKVENITRNIRRFGWPAVCMHGDKTQQERDDVLYQFKQGRAS 408

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  + +V NFD PN +E+YIHRIGRTGR+   G ++      + +  
Sbjct: 409 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQA 468

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             +  ++++    ++  L ++
Sbjct: 469 KDLVNVLQEANQTISPQLQTM 489


>gi|67483276|ref|XP_656915.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56474154|gb|EAL51537.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 535

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 127/383 (33%), Positives = 211/383 (55%), Gaps = 5/383 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +      ++  + +  Y+KPTPIQ    P+VLQ  DV GIA+TG+GKT SF++P +
Sbjct: 153 LTFEECNFPQSILDVIKEQNYIKPTPIQAIGWPIVLQGKDVVGIAETGSGKTISFLIPAI 212

Query: 61  TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +           PR LIL PTREL  Q+AD   K+ K   +      GG+P  +Q K 
Sbjct: 213 IHILDTPLAQYREGPRVLILAPTRELVCQIADEAIKFTKGTAIKTVRCFGGVPQSSQMKD 272

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            + G D+ + TPGR++D   RG   ++    L++DEADRML+MGF   +Q+I   +   R
Sbjct: 273 FQSGCDICVATPGRLIDFIKRGVTSLSRCTFLILDEADRMLEMGFEVQVQDIIGQIRPDR 332

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT++++AT    +Q+ +  F+ +P +I +  P   A       +    +  +   +  ++
Sbjct: 333 QTVMWTATWPQAIQQFALGFMFHPLQINIGNPDLHANESVKQIIEVCQERDRDSKMN-EI 391

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++   + K  +IF   K++  NLC+ L  Q + V  +HG+  Q  R + LS+FK G +  
Sbjct: 392 VKRIGSEKKVLIFVKTKRSADNLCYKLRDQRYRVACMHGDKVQAERDRALSDFKSGAVNY 451

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH--GKAFTLVAKEDIKH 356
           ++A+D+A+RGLDI ++  V N+++P+  ENYIHRIGRTGR GR   G+A +L    D + 
Sbjct: 452 LIATDVASRGLDIRNIEIVINYEMPSDIENYIHRIGRTGRMGRSVEGEAISLFTYADARL 511

Query: 357 IDAIEKLIEKKVDWLNGDLSSLN 379
              +  +++     +  +L ++ 
Sbjct: 512 AKDLISVLKGAHQEVPSELLNMR 534


>gi|224477065|ref|YP_002634671.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421672|emb|CAL28486.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 507

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 135/415 (32%), Positives = 213/415 (51%), Gaps = 13/415 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+S K    + + G+ +PTPIQ  +IP  L   D+ G AQTGTGKT +F +P++ 
Sbjct: 3   KFKDLGVSDKTAETLGNMGFEEPTPIQTDSIPYALHGLDILGQAQTGTGKTGAFGIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +          + LIL PTRELA QVA+    + +   + VA + GG+P   Q K L++
Sbjct: 63  KV----VDKEGVQALILAPTRELAMQVAEQLRAFSRGQRVQVATVFGGMPIGRQIKALKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH NR  L  ++I+ L+IDEAD M++MGFI  ++ I   +P   +  
Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDDIKTLIIDEADEMMNMGFIDDMRFIMDHLPSEDRQT 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +  +    +  +          +I     +  ++     +     +  K           
Sbjct: 179 MLFSATMPKAIQTLVQQFMKSPKIVKTMNNEMSDPQIDEYYTIVKELEKFETFT--NFLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K+ V  L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA
Sbjct: 237 VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE
Sbjct: 297 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGIAVTFVNPIEMDYIRQIE 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  +++       + +L PP  K  +    +  K       S     R ++ SSQ
Sbjct: 357 QTNDRR-------MRALRPPHRKEVLRARENDIKEKVEKWMSQEHSERLQDISSQ 404


>gi|322703417|gb|EFY95026.1| ATP-dependent rRNA helicase RRP3 [Metarhizium anisopliae ARSEF 23]
          Length = 478

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 143/428 (33%), Positives = 228/428 (53%), Gaps = 10/428 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+   +  A     Y  PTPIQ K+IP+ LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 58  TFKELGIVDSLCEACESLNYKFPTPIQEKSIPIALQDRDIIGLAETGSGKTAAFALPILQ 117

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    L+L PTRELA Q+   FE  G + +L  A+++GG+    Q   L +
Sbjct: 118 ALLD---KPQPLFGLVLAPTRELAHQIGQAFEALGSSISLRCAVIVGGLDMVPQAVALGK 174

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR++DH  + K      ++ LV+DEADR+LDM F P I  +   +P  R+T
Sbjct: 175 KPHIIVATPGRLVDHLEKTKGFSLRTLKYLVMDEADRLLDMDFGPAIDKLLKFIPRERRT 234

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT++ +++ +    L++P R+  +  S+  +T+            K+       L 
Sbjct: 235 YLFSATLSSKVESLQRASLRDPVRV--SVSSNKYQTVSTLLQNLLVVPQKRKDTYLIYLV 292

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++ T K+ I+F         +   L   GF    +HG + Q +R+  L+ F+ GT  ++V
Sbjct: 293 NEFTGKSTIVFTRTVWETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFRSGTRDILV 352

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V N+D+P  ++ YIHR+GRT RAG+ G A +LV + DI+    I
Sbjct: 353 ATDVAARGLDISKVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISLVTQYDIEIFQRI 412

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ-KSH 419
           E  + KK+D    +   +     +++ AQ     +   + +K    DRR K      K H
Sbjct: 413 EAALGKKLDIYPTEKEEVLAFQHRVEEAQREARIEMKSLSEKK---DRRGKGTKGTGKRH 469

Query: 420 IPLKESEK 427
               + E+
Sbjct: 470 RDDMDKEE 477


>gi|94265968|ref|ZP_01289692.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93453471|gb|EAT03884.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 369

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 132/368 (35%), Positives = 204/368 (55%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA       +   +   GY  PTPIQ + IP + +  D+ G+AQTGTGKTA+FVLP+L
Sbjct: 1   MSFAQFDFDATLTANIAACGYQAPTPIQTQAIPEIRRGRDIMGLAQTGTGKTAAFVLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  G       R +I+ PTRELA Q+  N  + G+   +    + GG+    Q K  +
Sbjct: 61  QKLSAGPR--GRVRAVIVAPTRELAEQIHVNIGELGRQTGIRSVAVYGGVSKFGQLKAFK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G ++++  PGR+LDH +   + +  +E+LV+DEAD M DMGF+P I+ +   +P  RQ 
Sbjct: 119 AGVEIIVACPGRLLDHLDSRDVNLGAVEMLVLDEADMMFDMGFMPAIKKLLKYLPAKRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++ ++++ L++P R+++N      +         Y    +    L + + 
Sbjct: 179 LLFSATMPAEIRHLADSILKDPARVQIN----HTQPTALVAHKLYRVEKQGKGALLKQVM 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F   K     L  +LEK G    A+ GN+ Q  R   +  FK+G   +MV
Sbjct: 235 QESAFSSALVFTRTKHAAKKLALNLEKAGHRAVALQGNMSQNKRKAAMEGFKQGRFNIMV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+D+P   E Y HRIGRTGRA R+G+A+T    ED   +  I
Sbjct: 295 ATDIAARGIDVAGISHVINYDMPATVEAYTHRIGRTGRAERNGEAYTFATAEDKVIVRQI 354

Query: 361 EKLIEKKV 368
           E+ I  ++
Sbjct: 355 ERAIGSRM 362


>gi|226944026|ref|YP_002799099.1| ATP-dependent DEAD/DEAH box helicase [Azotobacter vinelandii DJ]
 gi|226718953|gb|ACO78124.1| ATP-dependent DEAD/DEAH box helicase [Azotobacter vinelandii DJ]
          Length = 439

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 127/368 (34%), Positives = 195/368 (52%), Gaps = 1/368 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ A+ +  +V+PTP+Q   IP  L+ HD+  IA+TG+GKTA+FVLP+L  
Sbjct: 2   FSQFALHERLLKALAELNFVEPTPVQAAAIPPALEGHDLRVIARTGSGKTAAFVLPLLNG 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L          R LIL PTRELA Q     E++ +   +   L+ GG  F+ Q   L + 
Sbjct: 62  LIGDARPRVSIRALILLPTRELAQQTLKEVERFSQFTFIKSGLVTGGENFKVQAALLRKV 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI TPGR+L+H N G L + ++E+LV+DEADRMLDMGF   +Q +       RQTLL
Sbjct: 122 PDILIGTPGRLLEHLNAGHLDLRDVEVLVLDEADRMLDMGFAEDVQRLVESCANRRQTLL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT      +     +    R  +              + T    +     L   L   
Sbjct: 182 FSATTGGSGLREMVAKVLREPRHLMLNAVGELSETTRQQIVTADDPA-HKERLVHWLLEN 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T +  I+F N +     L   L   G     +HG  DQ+ R   +   ++G  +++VA+
Sbjct: 241 ETYRKAIVFTNTRAQADRLYGHLVAAGHKAFVLHGEKDQKDRKLAIERLRQGGARVLVAT 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  +  V NFD+P   + Y+HR+GRTGRAG  G A +L+   D   + ++E+
Sbjct: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRVGRTGRAGAEGLAVSLICHNDWNLMSSVER 360

Query: 363 LIEKKVDW 370
            ++++ + 
Sbjct: 361 YLKQRFER 368


>gi|297826827|ref|XP_002881296.1| hypothetical protein ARALYDRAFT_902447 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327135|gb|EFH57555.1| hypothetical protein ARALYDRAFT_902447 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 731

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 136/424 (32%), Positives = 218/424 (51%), Gaps = 32/424 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  L+ +++ AV  AGY KP+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPML 
Sbjct: 312 SWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLA 371

Query: 62  I-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                           P  +++ PTRELA Q+ +   K+       V  ++GG   E Q 
Sbjct: 372 YISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQG 431

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP- 175
            K+ +G +++I TPGR++D   R   ++N    +V+DEADRM+DMGF P +  +   +P 
Sbjct: 432 LKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPS 491

Query: 176 ----------------FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
                             R T +FSATM   +++++  +L+NP  + + T     +T + 
Sbjct: 492 SNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGT---AGKTTDL 548

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                      +     Q L  +   K  I+F N KKN  ++  +L+K G+ V  +HG  
Sbjct: 549 ISQHVIMMKESEKFFRLQKLLDELGDKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGK 608

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q  R   L  F+     ++VA+D+  RG+DIPDV HV N+D+P   E Y HRIGRTGRA
Sbjct: 609 SQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRA 668

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           G+ G A + +   D +    +++++ +         S++ P L + + ++       +  
Sbjct: 669 GKSGVATSFLTLHDTEVFYDLKQMLVQS-------NSAVPPELARHEASRFKPGTVPDRP 721

Query: 400 PQKS 403
           P+ S
Sbjct: 722 PRHS 725


>gi|258597823|ref|XP_001348611.2| helicase, putative [Plasmodium falciparum 3D7]
 gi|255528866|gb|AAN37050.2| helicase, putative [Plasmodium falciparum 3D7]
          Length = 527

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 135/425 (31%), Positives = 212/425 (49%), Gaps = 20/425 (4%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--E 64
           G    V+ ++ +   V PTPIQI+  P+ L   D+ G A+TG+GKT +F+LP    +  +
Sbjct: 119 GFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQ 178

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
                   P  L+L PTRELA Q+     K+     +      GG+P   Q   L++G  
Sbjct: 179 PNLKYGDGPIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVH 238

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +LI  PGR++D   +    +  +  LV+DEAD+MLDMGF   I+ I   +   RQTL++S
Sbjct: 239 ILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQTLMWS 298

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQSQD 243
           AT   E+Q ++++  +           +               ++ K   L   L +   
Sbjct: 299 ATWPKEVQALAKDLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFK 358

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
                I+F   KKN   +  +L   G     IHG+  Q  R  +L+ FK G   +M+A+D
Sbjct: 359 DNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATD 418

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +A+RGLDI +V +V NFD PN+ E+Y+HRIGRTGRAG HG +FT +  +  +    + K+
Sbjct: 419 VASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDLVKI 478

Query: 364 IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLK 423
           + +           + P LEKI  +  N+ R+N   P  S+G        S+  ++IPL+
Sbjct: 479 LRES-------EQPVPPQLEKISYSMGNNQRRN---PYYSSG-------RSNNVNNIPLR 521

Query: 424 ESEKI 428
            + + 
Sbjct: 522 GNNRF 526


>gi|312963192|ref|ZP_07777677.1| ATP-dependent RNA helicase [Pseudomonas fluorescens WH6]
 gi|311282703|gb|EFQ61299.1| ATP-dependent RNA helicase [Pseudomonas fluorescens WH6]
          Length = 444

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 153/370 (41%), Positives = 218/370 (58%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L     +V     R LIL PTRELA QV  +  +Y ++  LT   + GG+    Q  K
Sbjct: 61  QLLTLEGPKVAANSARALILCPTRELAEQVHASVAEYAQHLPLTTYAVYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR++D F +  L +N ++ LV+DEADRMLD+GF   + NI  ++P  R
Sbjct: 121 LRKGVDILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D+++ ++   L +P  IEV+  +  A T+            K+ A L   
Sbjct: 181 QTLLFSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTV---KQWVVPVDKKRKAELFVH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +   K  ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +Q+
Sbjct: 238 LMRKGRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKASEVQI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V NFD+P  AE+YIHRIGRTGRAG  G+A +LV  +++  + 
Sbjct: 298 LVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLS 357

Query: 359 AIEKLIEKKV 368
           AIE L  + +
Sbjct: 358 AIEMLTRQTL 367


>gi|240172264|ref|ZP_04750923.1| cold-shock DEAD-box protein, DeaD [Mycobacterium kansasii ATCC
           12478]
          Length = 570

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 127/370 (34%), Positives = 192/370 (51%), Gaps = 4/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL + P V+ A+   GY  PT IQ  TIP ++   DV G+AQTGTGKTA+F +P+L+
Sbjct: 14  TFVDLQIHPSVLRAIAGVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILS 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-E 120
            ++      +    LIL PTRELA QVA+ F +YG        L I G    A       
Sbjct: 74  KIDVTSTATQ---ALILAPTRELALQVAEAFSRYGAYLPKLNVLPIYGGSSYAVQLAGLR 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +++ TPGR++DH  RG L ++ ++ LV+DEAD ML MGF   ++ I S  P  +Q 
Sbjct: 131 RGAQIIVGTPGRVIDHLERGTLDLSRVDYLVLDEADEMLAMGFAEDVERILSDTPEYKQV 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++K++  +L +P  +     ++TAE I   ++                ++
Sbjct: 191 ALFSATMPPAIRKITTKYLHDPLEVTSKAKTATAENISQRYIQVAGPRKMDALTRVLEVE 250

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + M   +      + V     +      ++        +   +  L       I ++V
Sbjct: 251 PFEAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQQQRERTITALREGGPNGIDILV 310

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  +   + AI
Sbjct: 311 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRPGAALLFVSPRERHLLKAI 370

Query: 361 EKLIEKKVDW 370
           EK   + +  
Sbjct: 371 EKATRQTMTE 380


>gi|212550405|ref|YP_002308722.1| ATP-dependent RNA helicase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548643|dbj|BAG83311.1| putative ATP-dependent RNA helicase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 548

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 130/371 (35%), Positives = 207/371 (55%), Gaps = 8/371 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+ P ++ A+ + GY  P PIQ K IP +L + ++V  +A+TGTGKTA+F LP+L
Sbjct: 3   TFEELGIIPDILKAITEIGYENPMPIQEKVIPYLLGKGNEVIALAETGTGKTAAFGLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKL 119
             ++        P+ ++L PTREL  Q+A++   Y K       L I G    E+Q K L
Sbjct: 63  QQIQIHH---EHPQAVVLCPTRELCLQIANDINNYSKYLKKLKILPIYGGSNIESQIKAL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  +++ T GR++D   RG + +  +  +V+DEAD ML +GF   I  I   +P  R 
Sbjct: 120 RGGVHIVVATSGRLIDLIKRGAVDLQYVRNVVLDEADEMLSVGFSESIDEILRHIPEDRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  E+  +++ +++NP  I +   +S   T+ H +             L + L
Sbjct: 180 MLLFSATMPLEISWITKKYMRNPHEIVIGKKNSGGRTVRHVYYMVSVSDR---YFLLKRL 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GI+FC  K     + + L + G++V A+HG++ Q  R  I+  F+   IQL+
Sbjct: 237 VDYHPNIYGIVFCRTKNETQEIANFLIRDGYNVDALHGDLSQSQRDYIMQKFRLHNIQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLD+  + H+ N+ +P+  E+YIHR GRTGRAG+ G +  ++  ++   I A
Sbjct: 297 VATDVASRGLDVDGLSHIINYGLPSDIESYIHRSGRTGRAGKTGTSIAIIHLKEKFKIRA 356

Query: 360 IEKLIEKKVDW 370
           IE+ I K  + 
Sbjct: 357 IERCINKTFEK 367


>gi|15226155|ref|NP_180929.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|75319077|sp|P93008|RH21_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 21
 gi|1707017|gb|AAC69128.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase
           [Arabidopsis thaliana]
 gi|17473908|gb|AAL38370.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase
           [Arabidopsis thaliana]
 gi|20259792|gb|AAM13243.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase
           [Arabidopsis thaliana]
 gi|330253781|gb|AEC08875.1| DEAD-box ATP-dependent RNA helicase 21 [Arabidopsis thaliana]
          Length = 733

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 136/424 (32%), Positives = 218/424 (51%), Gaps = 32/424 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  L+ +++ AV  AGY KP+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPML 
Sbjct: 314 SWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLA 373

Query: 62  I-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                           P  +++ PTRELA Q+ +   K+       V  ++GG   E Q 
Sbjct: 374 YISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQG 433

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP- 175
            K+ +G +++I TPGR++D   R   ++N    +V+DEADRM+DMGF P +  +   +P 
Sbjct: 434 LKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPS 493

Query: 176 ----------------FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
                             R T +FSATM   +++++  +L+NP  + + T     +T + 
Sbjct: 494 SNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGT---AGKTTDL 550

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                      +     Q L  +   K  I+F N KKN  ++  +L+K G+ V  +HG  
Sbjct: 551 ISQHVIMMKESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGK 610

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q  R   L  F+     ++VA+D+  RG+DIPDV HV N+D+P   E Y HRIGRTGRA
Sbjct: 611 SQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRA 670

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           G+ G A + +   D +    +++++ +         S++ P L + + ++       +  
Sbjct: 671 GKSGVATSFLTLHDTEVFYDLKQMLVQS-------NSAVPPELARHEASRFKPGTVPDRP 723

Query: 400 PQKS 403
           P+ S
Sbjct: 724 PRHS 727


>gi|330998021|ref|ZP_08321852.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
 gi|329569322|gb|EGG51102.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
          Length = 664

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 139/378 (36%), Positives = 219/378 (57%), Gaps = 10/378 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60
            F +LG+S ++  A+ + GY  P P+Q + IP +L   +DV  +AQTGTGKTA++ LP+L
Sbjct: 3   TFEELGVSAEIRQAIEEMGYEHPMPVQEEVIPYLLGVNNDVVALAQTGTGKTAAYGLPVL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             ++  R   +    LIL PTREL  Q+AD+ E Y K       L + G    E Q + L
Sbjct: 63  QKVDASRNETQA---LILSPTRELCLQIADDLENYSKYLPGVRVLPVYGGANIEPQIRTL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  V++ TPGR++D   R    + ++E +V+DEAD ML MGF   I  I + VP    
Sbjct: 120 RKGVQVIVATPGRLIDLMERKAASLEHVENVVLDEADEMLSMGFTESIDKILAGVPENHN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E++++S+ +L++ K I V + +  AET+ H     Y  ++K   L  + +
Sbjct: 180 TLLFSATMSREIERISKKYLRDAKEIVVGSRNEGAETVNH---VYYMVHAKDKYLALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIFC  +     +   L + G++  ++HG++ Q+ R   +  F++  +Q +
Sbjct: 237 VDYYPKIYAIIFCRTRLETQEVADKLIQDGYNADSLHGDLSQQQRDLTMQKFRQHRVQFL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  ENY HR GRTGRAG+ G +  +V   +   I  
Sbjct: 297 VATDVAARGLDVEDLTHVINYGMPDDIENYTHRSGRTGRAGKKGTSICIVHTRERSKIRE 356

Query: 360 IEKLIEKKVDWLNGDLSS 377
           IEK+I K  +++ G++ S
Sbjct: 357 IEKVIGK--EFVKGEMPS 372


>gi|319405915|emb|CBI79547.1| ATP-dependent RNA helicase [Bartonella sp. AR 15-3]
          Length = 430

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 151/429 (35%), Positives = 240/429 (55%), Gaps = 12/429 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGLS  +V  +  AG  KP  IQ + IP++L+ HD+ GIAQTG+GKT +F LP+L  
Sbjct: 9   FAELGLSSLLVKNLFIAGMHKPKLIQERAIPVMLKGHDILGIAQTGSGKTLAFSLPILNR 68

Query: 63  LEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     +         IL PTRELA Q+ +      K  +L+  L++GG+    Q +++ 
Sbjct: 69  ILALGDKRHPKTARALILVPTRELAIQIEEAISAVAKGTHLSTCLILGGMSRLTQIRRMA 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR++D      + ++     ++DEADRMLDMGFI  ++ I + +    QT
Sbjct: 129 KGVDILVATPGRLIDLIRSKYVDLSKSRFFILDEADRMLDMGFINDVRQIANFLHKKCQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ E+  +++N L+ P +IEV +  +TA  I            K          
Sbjct: 189 ALFSATMSKEVNVLADNLLKKPVKIEVVSQGTTAAEITQVLYCVSTSEKKSVLGKLL--- 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   + + I+F   K    ++  SL K G+SV  IHGN  Q +R + L +F+EG ++++V
Sbjct: 246 TNPALASVIVFIRTKHGADSVARSLAKTGYSVATIHGNKSQNARQRALKDFREGLVRVLV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+DIP + HV N+D+P+ AE+Y+HRIGRTGR    G A TL  ++ +   + A
Sbjct: 306 ATDIAARGIDIPRISHVINYDLPDNAESYVHRIGRTGRNSASGDAITLFDEKIEQVRLCA 365

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE+LI  K+    +    +SL   L +  I +   ++K +    K    DR   N + + 
Sbjct: 366 IERLIRMKITRKEIPLQFASLPEKLAEPKIYKREGSKKRHLREFK----DRENLNSTDKI 421

Query: 418 SHIPLKESE 426
           + +  K++ 
Sbjct: 422 AQLKSKKTH 430


>gi|210623599|ref|ZP_03293925.1| hypothetical protein CLOHIR_01875 [Clostridium hiranonis DSM 13275]
 gi|210153469|gb|EEA84475.1| hypothetical protein CLOHIR_01875 [Clostridium hiranonis DSM 13275]
          Length = 371

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 130/368 (35%), Positives = 204/368 (55%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF DL +   ++  +  +G  KPTP+Q + I ++    DV   +QTGTGKT +F++P L
Sbjct: 1   MDFKDLNIKEDIIDILKKSGITKPTPVQEECIGIIKDGRDVIAQSQTGTGKTLAFLIPTL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + K +  V     LIL PTRELA Q+++  EK  +   L +    GG   ++Q  KL+
Sbjct: 61  EKINKNKKDVS---ALILTPTRELALQISNEAEKLAEPLGLNILSAYGGKDIKSQVNKLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH +R  + + N++I ++DEAD+ML MGF   I  I       RQ+
Sbjct: 118 GNIHLVIATPGRLLDHLDRKTISLKNLDIFILDEADQMLLMGFKNEIDAILKETNKKRQS 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  +++K++  +  +P  IE+ +   T E I     +      ++       + 
Sbjct: 178 LFFSATMDSQVKKLAYRYTNDPAFIEIKSQEVTLEKI---NQSIVKTTDRRKFDSLCKVL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D     IIFC  K+    L   +  +G++   IH +I Q  R +I+ NF+    Q ++
Sbjct: 235 DGDNPFMAIIFCRTKRRADKLEEDMGSRGYNCEKIHSDISQAKRERIMKNFRNMKTQYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI  V H++N+D P  AE+YIHRIGRTGRAG +G     V  ++ K ++ +
Sbjct: 295 ATDVASRGLDITGVTHIYNYDFPETAEDYIHRIGRTGRAGENGDTCAFVTDKNTKILEDV 354

Query: 361 EKLIEKKV 368
           E  +  K+
Sbjct: 355 ENKLGFKI 362


>gi|294657726|ref|XP_460025.2| DEHA2E16632p [Debaryomyces hansenii CBS767]
 gi|218511815|sp|Q6BP45|ROK1_DEBHA RecName: Full=ATP-dependent RNA helicase ROK1
 gi|199432904|emb|CAG88281.2| DEHA2E16632p [Debaryomyces hansenii]
          Length = 550

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 119/438 (27%), Positives = 192/438 (43%), Gaps = 15/438 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F DL     L  K++  ++DAG+ +PTPIQ + IP+ L+  D+   A TG+GKT +F++
Sbjct: 111 SFEDLIGRYKLDKKLLSNLIDAGFTEPTPIQDEAIPISLEGRDLIACAPTGSGKTLAFLI 170

Query: 58  PMLTI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEA 114
           P++          +    R LI+ PT ELA Q+        K   + + +L         
Sbjct: 171 PLVQTILQSNPNVKNYGIRGLIISPTNELAVQIFQELNTMTKGKKMKIGILSKQLANKIN 230

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
                    D+L+ TP R++D      + ++ +E LVIDE D++ D GF+     I S  
Sbjct: 231 NKIINSSKYDILVSTPLRLIDSIKNETISLSKVEQLVIDETDKLFDQGFVEQTDEILSNC 290

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
             T+      +       +     +       +      A       +        K   
Sbjct: 291 TNTKLRKSMFSATIPSGVEEMAQSIMKDPIRVIIGHKEAASNTIEQKLVFTGNEEGKLLA 350

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           ++Q++Q  +     IIF         L H L     +V  IH     + R +++  FK G
Sbjct: 351 IRQMIQQGEFKPPIIIFLQSITRAKALFHELLYDRLNVDVIHAERTPKQRDEVIKRFKSG 410

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I +++ +D+ ARG+D   V  V N+DVP  A+ Y+HRIGRTGR G+ GKA T   KED 
Sbjct: 411 DIWVLITTDVIARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDD 470

Query: 355 KHIDAIEKLIEKK------VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           K +  I  ++++         WL  D+  L+   EK D+ +H   RK      K     R
Sbjct: 471 KAVKPIINVMKQSGCESGYSGWLE-DMHKLSKN-EKKDVKKHEIKRKQISTVPKIMKQKR 528

Query: 409 RKKNYSSQKSHIPLKESE 426
           +++      S    +ES+
Sbjct: 529 KQREEMIDASKRRKQESQ 546


>gi|315633657|ref|ZP_07888947.1| ATP-dependent RNA helicase RhlB [Aggregatibacter segnis ATCC 33393]
 gi|315477699|gb|EFU68441.1| ATP-dependent RNA helicase RhlB [Aggregatibacter segnis ATCC 33393]
          Length = 432

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 134/417 (32%), Positives = 213/417 (51%), Gaps = 11/417 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  L P V+ A+ D G+   TPIQ  ++P+ L+  DV G AQTGTGKT +F+  +   
Sbjct: 25  FADFPLHPLVLQALNDKGFEFCTPIQALSLPVTLRGKDVAGQAQTGTGKTIAFLTALFHH 84

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                       PR LIL PTRELA Q+  + + + K      AL  GG  ++ Q K +E
Sbjct: 85  LLTHPTETDKNQPRALILAPTRELAVQIEHDAQIFLKTTKFKTALAYGGDGYDKQLKAIE 144

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI T GR++D+  +G + ++ I+ +V+DEADRM D+GFI  I+ +    P  +Q 
Sbjct: 145 NGVDVLIGTTGRVIDYVKQGIIRLDQIQTVVLDEADRMFDLGFIRDIRYLLRKCPPPQQR 204

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L    + T   +     F       E        +T +      +   ++    L   L 
Sbjct: 205 LTMLFSATLSYKVRELAFEDMND-PEYVEIEPEQKTGQQIKEELFYPSNQDKIPLLLTLL 263

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  IIF N K     +   L   G  V  + G++ Q+ R+ +L  F +G + ++V
Sbjct: 264 EEEWPERCIIFANTKHQCEAIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 323

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL I +V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   ++   ++ AI
Sbjct: 324 ATDVAARGLHIAEVTHVFNYDLPDDREDYVHRIGRTGRAGESGISISFACEQYAMNLPAI 383

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           E+ I   +     D ++L       DI Q    ++       S   ++R+K + +++
Sbjct: 384 EEYIGHSIPVSQYDPNALLQ-----DIPQPYRLKREGNF---SAPNNQRRKPFCAKR 432


>gi|297621628|ref|YP_003709765.1| putative ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU
           86-1044]
 gi|297376929|gb|ADI38759.1| putative ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU
           86-1044]
          Length = 395

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 127/395 (32%), Positives = 214/395 (54%), Gaps = 12/395 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  L PK++ ++ +  Y++P+ IQ K IP +L + DV  +AQTG+GKTA+  +P+ 
Sbjct: 6   LTFNDFNLDPKIIESLREMKYLEPSEIQTKAIPEILNKRDVVALAQTGSGKTAACAIPLC 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++  +  ++    L++ PTRELA Q A   +K GK   +    + GG   + Q  K+ 
Sbjct: 66  HMVDTSKDAIQ---ALVIVPTRELALQYATETQKIGKKRGVHAFAIYGGEDADIQEAKIG 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               VLI TPGR++D     ++ ++ + IL +DEAD ML MGF   ++ I + +    Q 
Sbjct: 123 HRVHVLIATPGRLIDFIYSRRIDLSQVFILALDEADEMLSMGFYEDLEFIINCLVQEHQI 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+++++E  +++P  I +        +IEH F+           +      
Sbjct: 183 LLFSATMPKEIRRIAEGHMKDPVDILLTQKKQGPSSIEHRFLYCRPDQRDASLIQLL--- 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      IIF   +  V +L  SL+K    V  +HG + Q  R  +   F+ G IQ +V
Sbjct: 240 NECQPVQSIIFGRTRFQVESLAKSLQKSVKGVDFLHGALSQDVRRIVTRKFRGGKIQHLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD  +V HVF +++ +  + Y+HR GRTGR  + G   TLV K D+  +  +
Sbjct: 300 ATDVAARGLDFSEVSHVFMYEMSDDPDIYVHRSGRTGRFDKQGMVVTLVTKRDLGVLGKV 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
            K ++KK  W+       +PP E++  ++  + ++
Sbjct: 360 LKFLKKKPQWIG------HPPPERVPESKPRNRKR 388


>gi|313682403|ref|YP_004060141.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313155263|gb|ADR33941.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 417

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 136/377 (36%), Positives = 211/377 (55%), Gaps = 6/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    L   +V AV ++GY  PTPIQ K IPLVL+++D+   AQTG+GK+ASFVLP+L
Sbjct: 1   MPFLHFSLLSPIVQAVKESGYTHPTPIQEKVIPLVLEKNDILARAQTGSGKSASFVLPIL 60

Query: 61  TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL--LIGGIPFEAQNK 117
            +    R+  +   + LIL PTREL  QVA  FE  GK+  +   +  +IGG     Q  
Sbjct: 61  HLWSLSRSEGKGKIKALILTPTRELTLQVAQAFESMGKHLPIKPKVLSIIGGESIGDQLY 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +++G D+L+ T GR LD   + ++ ++++E  V+DEAD+MLD+GF   ++ I   +P  
Sbjct: 121 AIQQGCDILVATSGRFLDVLKKKQMNLSHLEFFVLDEADKMLDLGFAEELELILDAIPQK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT   +++ ++     NP      T  +   T+++          +    L +
Sbjct: 181 RQNLLFSATYPPKMESIASKITPNPI---HVTLEAEMPTVQNIHQRVIEVNPENRGPLLR 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L + +  +  ++F   K+   N+     K GFS  + +G++ Q  R  +L  FK+  I+
Sbjct: 238 HLLNTEKWEQVLVFMANKRASDNIAAKFRKYGFSADSFNGDLLQEDRNYVLEQFKKKKIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ A+D+AARGLDI D+  V NFD+P    +YIHRIGRTGRAG+ G A + +   +  H 
Sbjct: 298 ILFATDIAARGLDIDDITCVVNFDLPRSPADYIHRIGRTGRAGKSGLAISFIGFAERDHF 357

Query: 358 DAIEKLIEKKVDWLNGD 374
             IEK  + K+     +
Sbjct: 358 ALIEKRSKIKLPREQIE 374


>gi|156083731|ref|XP_001609349.1| DEAD/DEAH box helicase [Babesia bovis T2Bo]
 gi|154796600|gb|EDO05781.1| DEAD/DEAH box helicase [Babesia bovis]
          Length = 609

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 127/427 (29%), Positives = 207/427 (48%), Gaps = 22/427 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
           DF + G+   ++  +L   Y KPTPIQ  +IP+++   D+   AQTG+GKTA+F+LP+  
Sbjct: 151 DFEN-GIHELLMVNILRVNYTKPTPIQKHSIPVIMAGRDLMACAQTGSGKTAAFLLPICT 209

Query: 61  -----------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                       +     +R  +P  L+L PTRELA Q      K+  N  +   +L GG
Sbjct: 210 AMLKTGPPASRPMQSSYHSRQALPVCLVLSPTRELAMQTFTEARKFIYNTGIRAVVLYGG 269

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q  +LERG D+ + TPGR+ D   R ++ ++ +  LV+DEADRMLDMGF P I+ 
Sbjct: 270 GEVRRQLYELERGCDICVATPGRLTDILERNRIGLHCVSYLVLDEADRMLDMGFAPQIRQ 329

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           +       ++            +++ +      +            T E           
Sbjct: 330 VVEHSSMPQEGRQTVMFSATFPKEIQQLARDFLRDYLYLAVGRVGSTNEFIRQRLLYADQ 389

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           ++       L  ++T    +IF   K+    +   L K+ F    IHG+  Q+ R + L 
Sbjct: 390 EQKLHYLVKLLRENTNGLVLIFVETKRRADMIESYLLKENFMAVNIHGDRSQQDREEALR 449

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G   ++VA+D+AARGLDI ++ HV N D+P   ++Y+HRIGRTGRAG  G A +LV
Sbjct: 450 LFKTGERPILVATDVAARGLDINNITHVINCDLPANIDDYVHRIGRTGRAGNVGVATSLV 509

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           +++D   +  +  L+E+    +      L        +A H H+       ++++G  R 
Sbjct: 510 SEKDRSILKDLLALLEEANQEVPQWFEKL--------VASHPHSGGGRDYGKRASG-GRM 560

Query: 410 KKNYSSQ 416
            + ++S+
Sbjct: 561 SRPFASR 567


>gi|300779124|ref|ZP_07088982.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
 gi|300504634|gb|EFK35774.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
          Length = 373

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 150/365 (41%), Positives = 212/365 (58%), Gaps = 3/365 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L   ++ AV +AGY KPT IQ   IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 2   MSFKSLNLINAIIRAVTEAGYSKPTEIQYTAIPHILAGKDIIGCAQTGTGKTAAFAMPIL 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+K     +  RTLIL PTRELA Q+ +NF  Y K   L+   + GG+    Q   L 
Sbjct: 62  QLLKKYTPDHKEIRTLILTPTRELAIQIEENFAVYSKYLPLSQLSIYGGVSAGGQLAALR 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+L+ TPGR+LD  N+  + ++ IEI V+DEADRMLDMGFI  ++ +  L+P  RQT
Sbjct: 122 KRVDILVATPGRLLDLVNQRHIDLSKIEIFVLDEADRMLDMGFINDVKKVLKLIPQKRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   ++K +E  L NP ++   T +  + T +    + Y    +    L   L 
Sbjct: 182 LFFSATMPSGIRKFAETILNNPVKV---TVTPVSSTAQTVKQSVYFVEKRDKTGLLIDLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + M+  ++F   K     L   LE  G    AIHGN  Q +R   L +FK   I++++
Sbjct: 239 QNENMRRSLVFTRTKYIANKLVQQLEGVGIFAAAIHGNKSQTARQNALDDFKSSKIKVLI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV N+++PN  E Y+HRIGRTGRAG  G A +    ++   +  I
Sbjct: 299 ATDIAARGIDIDDLPHVVNYELPNIPETYVHRIGRTGRAGTEGTAISFCDTDERLDLKNI 358

Query: 361 EKLIE 365
           +KLI 
Sbjct: 359 QKLIG 363


>gi|260581720|ref|ZP_05849517.1| superfamily II DNA and RNA helicase [Haemophilus influenzae NT127]
 gi|260095313|gb|EEW79204.1| superfamily II DNA and RNA helicase [Haemophilus influenzae NT127]
          Length = 415

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 127/379 (33%), Positives = 196/379 (51%), Gaps = 4/379 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDLSLHPIVRDALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 71  LLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P  + 
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIALDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L    + T   +     F       E        +T        +   ++    L   L
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMND-PEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTL 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G + ++
Sbjct: 250 MEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGNLDIL 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ A
Sbjct: 310 VATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPA 369

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+ I   +     +  +L
Sbjct: 370 IEEYIGHSIPVSQYETEAL 388


>gi|110680325|ref|YP_683332.1| putative ATP-dependent RNA helicase, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456441|gb|ABG32646.1| putative ATP-dependent RNA helicase, putative [Roseobacter
           denitrificans OCh 114]
          Length = 433

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 153/427 (35%), Positives = 239/427 (55%), Gaps = 9/427 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  + L P++V  +   G   PTPIQ + IP  +   DV G+AQTGTGKTA+F +P++ 
Sbjct: 3   DFEMMNLPPELVARLGRMGLKDPTPIQKQAIPHAMNGRDVMGLAQTGTGKTAAFGVPLVA 62

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +    GR   +  R L+L PTRELA Q++ N   + +N  + VA+++GG     Q K+L
Sbjct: 63  QMLELDGRPAPKSVRGLVLAPTRELATQISVNLRSFAENTKVKVAMVVGGQSINNQIKRL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+L+ TPGR+LD  +R  + ++    LV+DEAD+MLDMGFI  ++ I S++P  RQ
Sbjct: 123 ERGVDLLVATPGRLLDLMDRRAVRLDEAVFLVLDEADQMLDMGFIHDLRKIASVIPKERQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  ++ +++ ++L++P R+EV+ P   A+ +                 L   +
Sbjct: 183 TMLFSATMPKQMNELANSYLRSPIRVEVSPPGKAADKVTQEVHFIAKSEK---PGLLIEM 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L  SL K G++  +IHGN  Q  R + ++ FK G I+++
Sbjct: 240 LDKHRDERALVFGRTKHGSEKLMKSLVKAGYAAGSIHGNKSQGQRDRAIAAFKSGEIKVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIPDV HV+N+D+PN  +NY+HRIGRT RAG+ G A    A +++  + A
Sbjct: 300 VATDVAARGLDIPDVKHVYNYDLPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGELKA 359

Query: 360 IEKLIEKKVDWLNG---DLSSLNP-PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           I+K +   +   +G   + + + P    K               P        RK+  + 
Sbjct: 360 IQKTMGISIPVGSGRPWEAADIPPGDKTKGRGRGRGGRPPQAGKPAGGRPGGPRKRAGAR 419

Query: 416 QKSHIPL 422
            +   P 
Sbjct: 420 NRRGKPA 426


>gi|255575815|ref|XP_002528806.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223531759|gb|EEF33579.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 500

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 133/406 (32%), Positives = 212/406 (52%), Gaps = 16/406 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  +     ++  + D G V+PTPIQ++ +P++L   D+ GIA TG+GKT  FVLPM+ 
Sbjct: 56  NFKSMRFPEPILKKLKDKGIVQPTPIQVQGLPVILTGRDMIGIAFTGSGKTLVFVLPMIM 115

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
                 +    A    P  LI+ P+RELA Q  +  E++           L   L IGG+
Sbjct: 116 VALQEEIMMPIAPGEGPFGLIICPSRELARQTYEVVEQFLIPMKEAGYPELRPLLCIGGV 175

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + +++G  +++ TPGR+ D   + K+ ++N   L +DEADR++D+GF   I+ +
Sbjct: 176 DMRSQLEVVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 235

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 236 FDHFKAQRQTLLFSATMPTKIQN----FARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 291

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IFC  K +V ++   L  +G    AIHG  DQ  R   +S+
Sbjct: 292 EAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISS 351

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 352 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 411

Query: 351 KEDIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           K   +  +  ++ L+++    +   L+ LN P+E  D   +    K
Sbjct: 412 KNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDGDTITNASGVK 457


>gi|281182808|ref|NP_001162410.1| probable ATP-dependent RNA helicase DDX43 [Papio anubis]
 gi|163781000|gb|ABY40781.1| DEAD box polypeptide 43 (predicted) [Papio anubis]
          Length = 648

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 141/412 (34%), Positives = 219/412 (53%), Gaps = 11/412 (2%)

Query: 2   DFAD-LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F D     P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT  +++P  
Sbjct: 242 TFDDAFQCYPEVMKNIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGF 301

Query: 61  TILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L+       +   P  L+L PTRELA QV     KY     L    + GG   + Q +
Sbjct: 302 IHLDLQPTLKGQRNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIE 360

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L +G D++I TPGR+ D      + + NI  LV+DEAD+MLDMGF P I  I   V   
Sbjct: 361 ELRKGVDIIIATPGRLNDLQMNNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPD 420

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++ SAT    + ++++++L+ P  + V T    A +     +    +  K   +   
Sbjct: 421 RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMHT- 479

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            LQ+  +    I+F ++K    +L   L     S+ ++HG+ +QR R K L NFK G ++
Sbjct: 480 FLQNMSSTDKVIVFVSRKAVADHLSSDLILGNISIESLHGDREQRDREKALENFKTGKVR 539

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+DLA+RGLD+ DV HV+NFD P   E Y+HRIGRTGRAGR G + T + + D +  
Sbjct: 540 ILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVA 599

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             +  ++E+    +  +L S+           H   R+     ++  G  ++
Sbjct: 600 SELINILERANQSIPEELVSMAE-----RFKAHQQKREMERKMERPQGRPKK 646


>gi|85711917|ref|ZP_01042972.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
 gi|85694314|gb|EAQ32257.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
          Length = 421

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 133/382 (34%), Positives = 206/382 (53%), Gaps = 2/382 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  K+  A+  AG+   TPIQ  ++P+ L   DV G AQTGTGKT +F+L     
Sbjct: 11  FETLGLHDKIQQALTSAGFENCTPIQALSLPVALSNQDVAGQAQTGTGKTLAFLLATFNR 70

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +      PR +I+ PTRELA Q+A++ +   +   L  A++ GG  +EAQ ++L  
Sbjct: 71  LMQSQKSSEAGPRAIIMAPTRELAIQIANDAKILTQTCELKTAVIYGGEGYEAQQQQLAD 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D++I T GRI+D + +    ++NIE++V+DEADRM D+GFI  I+ +   +P   + L
Sbjct: 131 KPDIIIGTTGRIIDFYKQSLFPLDNIEVVVLDEADRMFDLGFINDIRYLLKAMPDPSERL 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
               + T   +     +       +V       +T        +         L   L  
Sbjct: 191 NLLFSATLSYRVQELAYEHMNAPTKVEVEPQQ-KTGVRISEELFYPSKYDKMPLLLTLIE 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     I+F N K     +   LE  G  V  + G++ Q+ R+KIL +F EG + ++VA
Sbjct: 250 EDWPDRAIVFANTKHGCDKVHQWLEINGHRVGLLTGDVPQKKRLKILDDFAEGHLDILVA 309

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGL IP+V HV+NFD+P+  E+Y+HRIGRTGRAG  G A +L  +E + ++ AIE
Sbjct: 310 TDVAARGLHIPEVTHVYNFDLPDDCEDYVHRIGRTGRAGASGAAVSLACEEYVYNLPAIE 369

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
             I   +     D +++   L+
Sbjct: 370 DYIGHTIPVTKYDETAILTDLK 391


>gi|218187683|gb|EEC70110.1| hypothetical protein OsI_00766 [Oryza sativa Indica Group]
          Length = 470

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 133/419 (31%), Positives = 207/419 (49%), Gaps = 46/419 (10%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+G    V+  +  AG+V+PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP + 
Sbjct: 94  EFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIV 153

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA Q+     K+G                       
Sbjct: 154 HVNAQPILAPGDGPIVLVLAPTRELAVQIQQEATKFGV---------------------- 191

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               +++I TPGR++D        +  I  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 192 ----EIVIATPGRLIDMIESHHTNLRRITYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQ 247

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL +SAT   E+++++ NFL +P ++ + +    A       V   ++  K    L  LL
Sbjct: 248 TLYWSATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILSESQKY-NKLVNLL 306

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +IF + KK    +   L   G+   +IHG+  Q  R  +LS FK G   +M
Sbjct: 307 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIM 366

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD+ DV +V N+D P   E+Y+HRIGRTGRAG  G A+T     + +    
Sbjct: 367 TATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKD 426

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           +  ++E+    ++ +L+++                     P  S+G   R + Y   +S
Sbjct: 427 LINILEEAGQKVSPELANM-----------------GRGAPPPSSGHRDRYRGYGGGRS 468


>gi|145357256|ref|XP_001422836.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583080|gb|ABP01195.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 710

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 141/447 (31%), Positives = 229/447 (51%), Gaps = 6/447 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F +L LS  +  A    GY KPTPIQ   IP+ +   DVCG A TG+GKTA+F+LP +  
Sbjct: 150 FDELHLSRPLTRACEALGYKKPTPIQAAVIPIAMTGRDVCGRAVTGSGKTAAFMLPQLER 209

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +G         L+L PTRELA QV    E   +   +   L++GG+    Q   L  
Sbjct: 210 MLHRGPRPAAATHVLVLVPTRELAVQVHQMTESLAQFTTIRAVLVVGGLSANVQAAALRT 269

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++++ TPGR++DH          ++  L++DEADR+L+MGF+  I+ I    P  RQT
Sbjct: 270 RPEIVVATPGRVIDHVRNTHSFGLEDLATLILDEADRLLEMGFLEEIKEIVRQCPKKRQT 329

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+T  ++ ++   ++NP R+  +T  +T + +    +      S +       + 
Sbjct: 330 LLFSATLTAGVEALASLSMKNPARLSADTLGTTPKRLVEEVLKLKPNQSAQKEAFLMAIV 389

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+   K+ IIF   K+    L   +         +HG++ Q  R+  L  F+ GT+  ++
Sbjct: 390 SRSYDKSTIIFSQTKQEAHRLKIIMGLSDIKAGELHGDMTQTQRLAALDEFRTGTVTHLI 449

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V +FD P    +Y+HR+GRT RAG+ G A T + + D K +  I
Sbjct: 450 ATDVAARGLDIPSVDAVISFDAPKTLASYLHRVGRTARAGKKGTALTFMEESDRKLVKTI 509

Query: 361 EKL-IEKKVDWLNGDL-SSLNPPLEKID--IAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            K     K   + G++ +  +  +E ++  I Q N+  +     QK+     +  N    
Sbjct: 510 AKRGANLKARIVPGNIVAEWHKKIEDMEEQIVQINYEERTERQLQKAEMEANKASNILEH 569

Query: 417 KSHIPLKESEKISKLQQDIQENDADSL 443
            + I  + ++   + ++D +    D+L
Sbjct: 570 AAEIKSRPAKTWFQSERDKRNAQKDAL 596


>gi|145353647|ref|XP_001421118.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581354|gb|ABO99411.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 755

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 141/447 (31%), Positives = 229/447 (51%), Gaps = 6/447 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F +L LS  +  A    GY KPTPIQ   IP+ +   DVCG A TG+GKTA+F+LP +  
Sbjct: 150 FDELHLSRPLTRACEALGYKKPTPIQAAVIPIAMTGRDVCGRAVTGSGKTAAFMLPQLER 209

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +G         L+L PTRELA QV    E   +   +   L++GG+    Q   L  
Sbjct: 210 MLHRGPRPAAATHVLVLVPTRELAVQVHQMTESLAQFTTIRAVLVVGGLSANVQAAALRT 269

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++++ TPGR++DH          ++  L++DEADR+L+MGF+  I+ I    P  RQT
Sbjct: 270 RPEIVVATPGRVIDHVRNTHSFGLEDLATLILDEADRLLEMGFLEEIKEIVRQCPKKRQT 329

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+T  ++ ++   ++NP R+  +T  +T + +    +      S +       + 
Sbjct: 330 LLFSATLTAGVEALASLSMKNPARLSADTLGTTPKRLVEEVLKLKPNQSAQKEAFLMAIV 389

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+   K+ IIF   K+    L   +         +HG++ Q  R+  L  F+ GT+  ++
Sbjct: 390 SRSYDKSTIIFSQTKQEAHRLKIIMGLSDIKAGELHGDMTQTQRLAALDEFRTGTVTHLI 449

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V +FD P    +Y+HR+GRT RAG+ G A T + + D K +  I
Sbjct: 450 ATDVAARGLDIPSVDAVISFDAPKTLASYLHRVGRTARAGKKGTALTFMEESDRKLVKTI 509

Query: 361 EKL-IEKKVDWLNGDL-SSLNPPLEKID--IAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            K     K   + G++ +  +  +E ++  I Q N+  +     QK+     +  N    
Sbjct: 510 AKRGANLKARIVPGNIVAEWHKKIEDMEEQIVQINYEERTERQLQKAEMEANKASNILEH 569

Query: 417 KSHIPLKESEKISKLQQDIQENDADSL 443
            + I  + ++   + ++D +    D+L
Sbjct: 570 AAEIKSRPAKTWFQSERDKRNAQKDAL 596


>gi|221133951|ref|ZP_03560256.1| ATP-dependent RNA helicase RhlB [Glaciecola sp. HTCC2999]
          Length = 426

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 124/383 (32%), Positives = 203/383 (53%), Gaps = 5/383 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL +   ++ A+ +A +   TPIQ  ++P ++   D+ G AQTGTGKT +F++     
Sbjct: 11  FSDLKIHQSIIDALNEANFEYCTPIQALSLPPLIDELDIAGQAQTGTGKTIAFLVATFHY 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +   + P+ +I+ PTRELA Q+ ++ E   K+  LT+ L+ GG  +E Q + L  G
Sbjct: 71  LLTHKNSEKGPKAMIMAPTRELAVQIYNDAELLSKHTGLTLGLIYGGEGYEDQRQTLTNG 130

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I T GRILD++ +G   +N++++ V+DEADRM D+GFI  I+ +   +P   + L 
Sbjct: 131 VDIIIGTTGRILDYYKQGIFSLNHLQVAVLDEADRMFDLGFIKDIRYLFRRMPNATERLS 190

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
              + T   +     +                +T        +         L   L   
Sbjct: 191 MLFSATLSYRVQELAYEHMNN-PTHVQIEPEKKTATRVQEELFYPSDDDKIRLLLTLLEN 249

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  +  ++F N K +   +   L   G  V  + G++ Q+ RM I+  F +G + ++VA+
Sbjct: 250 EWPEKAVVFANTKFSCETVAAWLMADGHRVGLLSGDVPQKKRMSIMEGFAKGKLDILVAT 309

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGL I  V HVFNFD+P+ AE+Y+HRIGRTGRAG+ G A +   ++   ++  IE 
Sbjct: 310 DVAARGLHIEKVTHVFNFDLPDDAEDYVHRIGRTGRAGKSGHAISFACEKYALNLPEIEA 369

Query: 363 LIEKKVDWLNGD----LSSLNPP 381
            IE  +   + D    L+ L PP
Sbjct: 370 YIEHSIPVTDYDSGALLTDLTPP 392


>gi|45442928|ref|NP_994467.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Microtus
           str. 91001]
 gi|45437795|gb|AAS63344.1| putative DEAD-box helicase [Yersinia pestis biovar Microtus str.
           91001]
          Length = 422

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 135/418 (32%), Positives = 206/418 (49%), Gaps = 9/418 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P VV A+ + G+   TPIQ   +PL L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFH 69

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                  +   +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQVTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T   +     F Q      V       +T        +   +++   L Q
Sbjct: 190 DKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQ-KTGHRIKEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K     +   L   G  V  + G++ Q+ R++IL +F +G + 
Sbjct: 249 TLIEEEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            AIE      +     +  +L   L     A    AR       + +G  R  +    
Sbjct: 369 PAIETYTGHSIPVSKYNSDALLTDL----PAPKRLARTRTGNGPRRSGAPRNNRKRPG 422


>gi|288558810|sp|P54824|DDX6_XENLA RecName: Full=ATP-dependent RNA helicase ddx6; AltName:
           Full=ATP-dependent RNA helicase p54; Short=P54H;
           Short=Xp54; AltName: Full=DEAD box protein 6
 gi|213623790|gb|AAI70228.1| P54H protein [Xenopus laevis]
 gi|213623792|gb|AAI70230.1| P54H protein [Xenopus laevis]
          Length = 481

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 112/377 (29%), Positives = 194/377 (51%), Gaps = 8/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 96  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 155

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L+    +    + +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 156 RLDL---KKDCIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 212

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++I+++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 213 DTVHVVIATPGRILDLIKKGVAKVDHIQMIVLDEADKLLSQDFMQIMEDIIMTLPKNRQI 272

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK    F+    +           T++           ++       L 
Sbjct: 273 LLYSATFPLSVQK----FMTLHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLF 328

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 329 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 388

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 389 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 448

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +   +  
Sbjct: 449 EEQLGTEIKPIPSSIDK 465


>gi|302496500|ref|XP_003010251.1| hypothetical protein ARB_03506 [Arthroderma benhamiae CBS 112371]
 gi|291173793|gb|EFE29611.1| hypothetical protein ARB_03506 [Arthroderma benhamiae CBS 112371]
          Length = 449

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 124/427 (29%), Positives = 197/427 (46%), Gaps = 23/427 (5%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
            + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L        ++   +
Sbjct: 2   GIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERTNP---KIAKTQ 58

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            LIL PTRELA Q +   +  GK+  + V +  GG   +    +L     +++ TPGRIL
Sbjct: 59  ALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLNDTVHIIVGTPGRIL 118

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D  ++G   ++     V+DEAD++L   F P I+ + +  P  RQ +LFSAT    ++  
Sbjct: 119 DLASKGVADLSECTTFVMDEADKLLSPEFTPVIEQLLTFHPKDRQVMLFSATFPIIVKT- 177

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
              F     R           T+            ++       L S+  +   IIFCN 
Sbjct: 178 ---FKDKHMRNPYEINLMDELTLRGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNS 234

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
              V  L   + + G+S    H  + Q +R ++  +F+ G  + +V SDL  RG+DI  V
Sbjct: 235 TNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAV 294

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
             V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  IE+ +  ++  +   
Sbjct: 295 NVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRYNLYKIEQELGTEIQPIPPS 354

Query: 375 LSSL----------------NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           +                   NP  E+    Q +  R+    P    G     + + S+ S
Sbjct: 355 IDKKLYVYETPNTIPRPISNNPSEEQKSAGQESQPRRQTTNPSNGHGQYSSNRGHYSRGS 414

Query: 419 HIPLKES 425
           +   + S
Sbjct: 415 YRGSRGS 421


>gi|222617918|gb|EEE54050.1| hypothetical protein OsJ_00740 [Oryza sativa Japonica Group]
          Length = 468

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 132/419 (31%), Positives = 207/419 (49%), Gaps = 46/419 (10%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+G    V+  +  AG+V+PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP + 
Sbjct: 92  EFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIV 151

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA Q+     K+G                       
Sbjct: 152 HVNAQPILAPGDGPIVLVLAPTRELAVQIQQEATKFGV---------------------- 189

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 190 ----EIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQ 245

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL +SAT   E+++++ NFL +P ++ + +    A       V   ++  K    L  LL
Sbjct: 246 TLYWSATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILSESQKY-NKLVNLL 304

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +IF + KK    +   L   G+   +IHG+  Q  R  +LS FK G   +M
Sbjct: 305 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIM 364

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD+ DV +V N+D P   E+Y+HRIGRTGRAG  G A+T     + +    
Sbjct: 365 TATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKD 424

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           +  ++E+    ++ +L+++                     P  S+G   R + Y   +S
Sbjct: 425 LINILEEAGQKVSPELANM-----------------GRGAPPPSSGHRDRYRGYGGGRS 466


>gi|195131547|ref|XP_002010212.1| GI14822 [Drosophila mojavensis]
 gi|193908662|gb|EDW07529.1| GI14822 [Drosophila mojavensis]
          Length = 963

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 204/386 (52%), Gaps = 9/386 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L P ++  +   G+ KPT IQ +  P+ L   D+ GIAQTG+GKT +++LP + 
Sbjct: 237 NFEESSLPPHIIDEMKRQGFTKPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIV 296

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNK 117
               +    R   P  L+L PTRELA Q+      YG           + GG     Q +
Sbjct: 297 HISNQPPLMRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQAR 356

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LERG +V+I TPGR++D        +     LV+DEADRMLDMGF P I+ I   +   
Sbjct: 357 DLERGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 416

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ +++SAT   E+Q ++ +FL +  +I + + + +A       V    +  K   L++ 
Sbjct: 417 RQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICNENEKPQLLVRL 476

Query: 238 LLQSQDTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           L +      NG     IIF   K  V ++   +  +G+   +IHG+  Q  R  +L +F+
Sbjct: 477 LKEITSPSNNGGSNKIIIFVETKIKVEDILQIIRNEGYVATSIHGDKSQSERDSVLKDFR 536

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+D+A+RGLD+ D+ +V N+D PN +ENY+HRIGRTGR  + G A+T    +
Sbjct: 537 NGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPD 596

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           + K    +  ++E+     + +L  L
Sbjct: 597 NAKQARELISVLEEAGQTPSQELLDL 622


>gi|218258510|ref|ZP_03474866.1| hypothetical protein PRABACTJOHN_00521 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225386|gb|EEC98036.1| hypothetical protein PRABACTJOHN_00521 [Parabacteroides johnsonii
           DSM 18315]
          Length = 610

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 148/460 (32%), Positives = 246/460 (53%), Gaps = 19/460 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG++  ++ A+ + GY  P P+Q + IP +L   +DV  +AQTGTGKTA+F LP+L
Sbjct: 3   TFEELGVAAPILKAIQEMGYESPMPVQEEVIPFLLGDDNDVIALAQTGTGKTAAFGLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++    +   P+ L+L PTREL  Q+AD+   Y K  +    L + G    E+Q K L
Sbjct: 63  QKIDVTTYQ---PQALVLCPTRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIESQIKTL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGR+LD  NR  + ++ ++ +++DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KRGVHVVVATPGRLLDLMNRKTVNLSLVKNVIMDEADEMLNMGFTDSINAILAEVPENRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  E+  +++ +++NPK I +    +  E  ++     Y   ++   L  + +
Sbjct: 180 MLLFSATMPKEIAAITKRYMKNPKEIVIG---NKNEGNKNIRDIYYMVRAQDKYLALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GI+FC  +K    +   L + G++  ++HG + Q  R  ++  F+   IQL+
Sbjct: 237 ADFYPNIYGIVFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRVKNIQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G + ++   ++   I  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGISISICHVKEKGKIRE 356

Query: 360 IEKLIEKKVDW---------LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           IE++I KK +              L +L   +EK+ + +   A     I +K    D+  
Sbjct: 357 IERIINKKFEKGEIPSGSAICEKQLFNLVDQIEKVKVNEEEIASLMPQIYRKLEWLDKED 416

Query: 411 --KNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
             K   S + +  +   +   ++QQ  + +     G RG 
Sbjct: 417 IIKRVVSLEFNRMIDYYKDADEIQQVDERSARSERGERGE 456


>gi|282890698|ref|ZP_06299218.1| hypothetical protein pah_c026o010 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499291|gb|EFB41590.1| hypothetical protein pah_c026o010 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 538

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 144/468 (30%), Positives = 236/468 (50%), Gaps = 52/468 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL+  ++ A+ +A + +P+PIQ K IP++L   DV   AQTGTGKTA+F LP    
Sbjct: 51  FTDFGLNDSLLKAIAEAKFTQPSPIQEKVIPIILNGQDVVAQAQTGTGKTAAFGLP---- 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                 +      L++ PTRELA QV+D   + GK   +    + GG   + Q   +ERG
Sbjct: 107 SLNRLDKAAGVGLLVITPTRELAVQVSDELYRLGKYCGIRTIAVYGGQSIQRQIDGIERG 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A V++ TPGR+LD     +L   +  I+V+DEAD ML+MGF+  IQ I + +P  RQTLL
Sbjct: 167 AQVVVATPGRLLDLLKSRRLSHFSPPIVVLDEADEMLNMGFLEDIQEIFTFLPKERQTLL 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +QK+++ FL+ P+ I++    + ++ I+      +        +        
Sbjct: 227 FSATMPLPIQKLAKTFLREPEFIKITKKETASQNIQQICYVIHESERDDALVRLL---DA 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIFC  KK+V  +   L  +G+    +HG+++Q  R +++  F++   Q++ A+
Sbjct: 284 QEEAKSIIFCRTKKDVDRVSSFLTSRGYGARGLHGDMEQPQRQRVIDGFRQNEFQILAAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI-- 360
           D+AARGL++ DV HV+N+ +P   E+Y+HRIGRTGRAG  G A TL+   ++  +  I  
Sbjct: 344 DVAARGLNVLDVTHVYNYHLPYETESYVHRIGRTGRAGNKGIAITLLNPREVSGLKHIFR 403

Query: 361 ----------------------EKLIEK---------------------KVDWLNGDLSS 377
                                 EK ++K                      ++ ++ +L S
Sbjct: 404 EHGGNIEYQSIPTLQDVKRKFAEKFLKKVQQRHFDQEAHALLTELQKEMSLEEISVNLLS 463

Query: 378 LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKES 425
           L    +K++  +H      +      +   +RK+   S+ S+   ++ 
Sbjct: 464 LLLDYKKVEGPEHIGIHPQDIERSGGSSHQKRKRGGFSRDSNNRFRDR 511


>gi|171691382|ref|XP_001910616.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945639|emb|CAP71752.1| unnamed protein product [Podospora anserina S mat+]
          Length = 490

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 137/428 (32%), Positives = 215/428 (50%), Gaps = 6/428 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +  A    GY +PT IQ + IPL LQ  D+ GIA+TG+GKTA+F LP+L 
Sbjct: 63  TFKDLGIVDSLCEACDRLGYKQPTAIQQEAIPLALQDRDIIGIAETGSGKTAAFALPILQ 122

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    L+L PTRELAAQ+A +FE  G   NL  ALL+GG+    Q   L +
Sbjct: 123 AL---LDKPQPLFALVLAPTRELAAQIAQSFEALGSLINLRCALLLGGLDMVQQAIALGK 179

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR +          + N+   V+DEADR+LDM F P ++ I   +P  R+T
Sbjct: 180 KPHVVVATPGRLLDHLEKTKGFSLRNLRYCVMDEADRLLDMDFGPILEKILKFLPRERRT 239

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L++P ++ V+T      +             K    +    +
Sbjct: 240 FLFSATMSSKVESLQRASLRDPLKVNVSTSKYQTVSTLVSNYLFIPHIHKDTYFIYLCNE 299

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F         +   L   G     +HG + Q +R+  LS F+ GT  ++V
Sbjct: 300 FAGKTM--IVFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALSKFRAGTRNILV 357

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP+V  V N+D+P  ++ YIHR+GRT RAG+ G A ++V + D++    I
Sbjct: 358 ATDVAARGLDIPNVDCVINYDLPQDSKTYIHRVGRTARAGKSGHALSIVTQYDLEIWTRI 417

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  +  K+     +   +     +++ AQ +   +   +           K +  +K   
Sbjct: 418 EAALGTKLTEYAYEKDEVMVFKPRVEEAQRHARNEMKNLIDDRGKKGSVLKGHRGKKRGA 477

Query: 421 PLKESEKI 428
           P    + +
Sbjct: 478 PGSGRDNM 485


>gi|113460320|ref|YP_718381.1| ATP-dependent RNA helicase RhlB [Haemophilus somnus 129PT]
 gi|122945181|sp|Q0I1X0|RHLB_HAES1 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|112822363|gb|ABI24452.1| ATP-dependent RNA helicase, DEAD box family [Haemophilus somnus
           129PT]
          Length = 419

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 126/382 (32%), Positives = 199/382 (52%), Gaps = 3/382 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L   V  A+ + G+   TPIQ  ++P+ L+  D+ G AQTGTGKT +F+      
Sbjct: 11  FSDLALHRSVQQAIKEKGFEFCTPIQALSLPITLKGQDIAGQAQTGTGKTIAFLTATFHH 70

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +        PR LIL PTREL  Q+A++     +   L   L  GG  ++ Q K ++
Sbjct: 71  LLQKNNINSSEQPRALILAPTRELVVQIANDANFLVQATGLKTGLAYGGEGYDKQLKVID 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P  +Q 
Sbjct: 131 QGIDILIGTTGRVIDYVKQGIIRLDYIQVVVLDEADRMFDLGFIRDIRYLLRKCPVPQQR 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L    + T   +     F       +        +T        +   ++    L   L 
Sbjct: 191 LTMLFSATLSYKVRELAFEHMND-PQYVEIEPLQKTGHRIREELFYPSNQDKMALLMTLL 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  IIF N K     +   L   G  V  + G++ Q+ R+ +L  F +GT+ ++V
Sbjct: 250 EEEWPERCIIFSNTKHRCEEIWGYLSADGHRVGLLTGDVMQKKRLSLLKQFTDGTLDILV 309

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL IPDV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ AI
Sbjct: 310 ATDVAARGLHIPDVTHVFNYDLPDDCEDYVHRIGRTGRAGESGISISFACEEYAINLPAI 369

Query: 361 EKLIEKKVDWLNGDLSSLNPPL 382
           E+ I   +     D  +L   L
Sbjct: 370 EEYIGHSIPVSQYDAKALIEDL 391


>gi|313675031|ref|YP_004053027.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312941729|gb|ADR20919.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 590

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 135/386 (34%), Positives = 227/386 (58%), Gaps = 10/386 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59
           + F +LGL P+++ A+L+ G+V+PT IQ KTIP +L  + D+  +AQTG+GKTA+F LP+
Sbjct: 2   LTFEELGLKPEILKAILEIGFVEPTAIQQKTIPHLLNTKQDLIALAQTGSGKTAAFGLPV 61

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKK 118
           +  ++    + +    L+L PTRELA Q+A++F  Y K       + + G    E Q K 
Sbjct: 62  INQIDSDSKKTQS---LVLCPTRELAIQIANDFNSYTKYSKKLDVVPVYGGASIETQIKA 118

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G  +++ TPGR++D   R KL + +IE +V+DEAD ML+MGF   +  I S  P  R
Sbjct: 119 LNKGVQIVVGTPGRVVDLIKRKKLKLEDIEWVVLDEADEMLNMGFKDDLDFILSHTPDQR 178

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM+ E+ ++S N++  P+ I     +  A+ +EH     +    +   L  + 
Sbjct: 179 QTLLFSATMSKEVLRISNNYMNKPEEISSGKRNQGADKVEH---FYFVVNGRDKYLALKR 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   +     IIFC  K+    +   L   G++   +HG++ Q  R  ++  +++  +Q+
Sbjct: 236 IADINPDIYAIIFCRTKRETQEISDQLMADGYNADCLHGDLSQAQRDAVMGRYRKKNLQM 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ ++ HV N+++P+  E Y HR GRTGRAG+ G +  ++   DI  I 
Sbjct: 296 LVATDVAARGLDVNEITHVINYNIPDDLETYTHRSGRTGRAGKAGISMAIIGPRDINKIK 355

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
            +E+++ K   +   ++ + +  +EK
Sbjct: 356 QLERILGKT--FTKAEVPAGDAVIEK 379


>gi|50294444|ref|XP_449633.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661035|sp|Q6FJG1|FAL1_CANGA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49528947|emb|CAG62609.1| unnamed protein product [Candida glabrata]
          Length = 399

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 127/381 (33%), Positives = 209/381 (54%), Gaps = 8/381 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+  P+ IQ + I  ++   DV   AQ+GTGKTA+F + ML 
Sbjct: 24  TFESMDLKEGLLRGIYSYGFEAPSAIQSRAITQIISGKDVIAQAQSGTGKTATFTIGMLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +    + L+L PTRELAAQ+       G   N+    + GG   +   KK+++
Sbjct: 84  AIDL---KKHDLQALVLSPTRELAAQIGKVVTNLGDYMNVKAYAMTGGKTMKDDLKKIQK 140

Query: 122 G-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR--MLDMGFIPYIQNITSLVPFTR 178
               V+  TPGR+LD   R  +   +++ILV+DEAD      +GF   I +I + +P T 
Sbjct: 141 HGCQVISGTPGRVLDMIKRRLIETRHVQILVLDEADELLSDTLGFKHQIYDIFTKLPRTS 200

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++ SATM+ E+ ++++ F+ +P +I V     T E I+  +V    +  K   L    
Sbjct: 201 QVVVVSATMSPEILEITKKFMNDPVKILVKRDEITLEGIKQYYVNVEKEEWKFDTLCD-- 258

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +    T+   +IFCN KK V  L H L++  F+V ++HG++ Q  R ++++ F+ G  ++
Sbjct: 259 IYDSLTITQCVIFCNSKKKVDWLAHKLKQSNFAVISMHGDMKQDERDRVMNEFRTGQSRV 318

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++++D+ ARG+D+  V  V N+D+P   ENY+HRIGR+GR GR G A   + K D   + 
Sbjct: 319 LISTDVWARGIDVQQVSLVINYDLPEITENYVHRIGRSGRFGRKGVAINFLTKIDASRMK 378

Query: 359 AIEKLIEKKVDWLNGDLSSLN 379
            IEK  + KV  +  DLS L+
Sbjct: 379 EIEKYYKIKVKPMPADLSELS 399


>gi|168703446|ref|ZP_02735723.1| probable ATP-dependent RNA helicase [Gemmata obscuriglobus UQM
           2246]
          Length = 437

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 143/424 (33%), Positives = 218/424 (51%), Gaps = 19/424 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL P +V A  D GY +PTP+Q   IP  L+  DV   AQTGTGKTA F+LP+L
Sbjct: 1   MPFKALGLHPLIVRATQDLGYQEPTPVQAGAIPAALEGRDVLATAQTGTGKTAGFLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L          R L+L PTRELA Q+ D      K+  +  AL++GG P   Q +   
Sbjct: 61  HRLLAQPRGGT--RALVLSPTRELAEQIQDVCTGLAKHTPIQSALVVGGRPEGPQERAFR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+++ TPGR+LD   R    ++    LV+DEAD + DMGF+P ++ I + +P  + T
Sbjct: 119 AGVDIIVATPGRLLDMLQRNVAKLDRATTLVLDEADSLFDMGFLPDVKRIMARMPARKHT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + +++   L+NP  +++   SSTA  I                   + L 
Sbjct: 179 LLFSATMPPVIGQLANEVLRNPAVVQIGRRSSTAVGITQAAYPVPTHLKTAL---LRHLL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  M + ++F   K     +   +   GF+V  +H N     R   +  F++G  Q+MV
Sbjct: 236 RETEMPSVLVFTRTKFGAKKIARQVAADGFTVAELHSNRTPSQRTAAMEGFRQGKFQVMV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+++AARGLD+  + HV + DVP+  E+Y+HRIGRTGRAG  G AF L ++++   +  I
Sbjct: 296 ATNIAARGLDVNHITHVISTDVPDVPEDYVHRIGRTGRAGATGDAFILFSRDEEDSLARI 355

Query: 361 EKLIEKKVDWL---NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           E+ + +++  +   + D +   PP +            N   P +  G  R  ++   + 
Sbjct: 356 ERQVGQRLPRVTLPDFDYTLAAPPPQP-----------NGAKPPRGGGGSRPAQSAKPKS 404

Query: 418 SHIP 421
              P
Sbjct: 405 PKRP 408


>gi|331214536|ref|XP_003319949.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Puccinia
            graminis f. sp. tritici CRL 75-36-700-3]
 gi|309298939|gb|EFP75530.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Puccinia
            graminis f. sp. tritici CRL 75-36-700-3]
          Length = 1329

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 127/453 (28%), Positives = 228/453 (50%), Gaps = 17/453 (3%)

Query: 1    MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            M ++  GL    +  V   GY  PTPIQ + +P ++   DV G+A+TG+GKT +F+LPM 
Sbjct: 650  MKWSWFGLHAACLEVVKSLGYQSPTPIQGQAVPAIMSGRDVIGVAKTGSGKTLAFLLPMF 709

Query: 61   TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
              ++  R    +  P  +I+ PTRELA Q+      + K+  L  A   GG P +     
Sbjct: 710  RHIKDQRPLDALEGPIAMIMTPTRELATQIYKEGRPFLKSLGLRAACAYGGSPLKDNIAD 769

Query: 119  LERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++RGA+V++CTPGR+++     +   + M  +  LV+DEADRM DMGF P +  I + + 
Sbjct: 770  MKRGAEVIVCTPGRMIELLTTNSGRVINMRRVTYLVLDEADRMFDMGFEPQVMKIVNQIR 829

Query: 176  FTRQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQT+LFSAT   +++    +   +  +          +E  +   V   +    +   
Sbjct: 830  PDRQTVLFSATFPKQMEALARKILRRPLEITVGGRSVVASEIEQIVEVRQDSTKFNRLLE 889

Query: 235  LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            +     ++D+    ++F +++++  NL   L K+G+   ++HG  +Q  R +++++FK G
Sbjct: 890  ILGRSYNEDSESRSLVFVDRQESADNLFRDLLKKGYPCLSLHGGKEQVDRDQVIADFKSG 949

Query: 295  TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
               +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G   T +A +  
Sbjct: 950  VTPIVIATSVAARGLDVKQLKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCITFIAPDQE 1009

Query: 355  KHIDAIEKLIEKKVDWLNGDLSSLNPP-LEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            ++   + + +         +L +++   LEKI         K+       +GF  +  + 
Sbjct: 1010 RYAVDLLRALVTSGAKYPEELKTMSDSFLEKI---------KSGKAQASGSGFGGKGLDR 1060

Query: 414  SSQKSHIPLKESEKISKLQQDIQENDADSLGFR 446
              +K       +E+ +  +   +E   + +G  
Sbjct: 1061 L-EKDRDAKSRAERSAYGEPGGEEASKEEVGTG 1092


>gi|293376696|ref|ZP_06622919.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909]
 gi|325845185|ref|ZP_08168493.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
 gi|292644653|gb|EFF62740.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909]
 gi|325488781|gb|EGC91182.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
          Length = 368

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 130/370 (35%), Positives = 202/370 (54%), Gaps = 6/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LG+S  ++  +  +G   PTPIQ +  PL+    DV   AQTGTGKT +F+LP+ 
Sbjct: 1   MNFKTLGVSDDLIQVLKKSGITSPTPIQEQCYPLIKNYKDVIAQAQTGTGKTLAFLLPLF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      +   + LI+ PTRELA Q+ +   K  +  N+ V    GG    +Q  KL+
Sbjct: 61  ENI---SPDIEATQALIITPTRELALQITEEANKLAEIRNINVLAAYGGRNIGSQLNKLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++I TPGR++DH  R  + ++ ++ +VIDEAD+ML MGF   +  I    P  RQT
Sbjct: 118 KSIHLIIATPGRLIDHLERQTITLDKVKSVVIDEADQMLLMGFRNEVDQILRQTPRNRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   +++++  +  +P  I +       E+I            +  A     + 
Sbjct: 178 LCFSATMAPNVKRLAYRYSYDPTMITIEAKKVAVESI---KQELVETTDRWKADALCQVL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIFC  K+    L   ++++GF+   IH +I Q  R +IL +F+E  +Q ++
Sbjct: 235 EEDNPFLAIIFCRTKRRADQLFAKMKQRGFNTQVIHSDIAQNKRERILKSFREADLQYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI  V H++N+D+P   E YIHRIGRTGRAG  G     VA +D   ++AI
Sbjct: 295 ATDVASRGLDISGVTHIYNYDIPETPETYIHRIGRTGRAGEEGYTCLFVAPKDDFELNAI 354

Query: 361 EKLIEKKVDW 370
           E+ +   +  
Sbjct: 355 ERKLRFNIPR 364


>gi|149376365|ref|ZP_01894128.1| ATP-dependent RNA helicase RhlB [Marinobacter algicola DG893]
 gi|149359379|gb|EDM47840.1| ATP-dependent RNA helicase RhlB [Marinobacter algicola DG893]
          Length = 428

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 139/418 (33%), Positives = 215/418 (51%), Gaps = 10/418 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L  +V+ A+ D G+   TPIQ +T+P  L   D+ G AQTGTGKTA+F++  +  
Sbjct: 13  FKDLNLDQRVLDAITDIGFEHCTPIQAETLPFTLACQDLIGQAQTGTGKTAAFLITAIQS 72

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +      K       PR L L PTRELA Q+A + E+        V  ++GG+ ++ Q  
Sbjct: 73  MLETPIPKEDRFASEPRVLALAPTRELAMQIAKDAEQLCGYTGHNVVTVVGGMNYDKQRD 132

Query: 118 K-LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +      D+L+ TPGR++D      + ++ ++IL++DEADRMLDMGFIP ++ I      
Sbjct: 133 QLQNEIVDILVATPGRLIDFLGSQDVFLDQLDILILDEADRMLDMGFIPDVKRIIRKCTP 192

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             +      + T   Q V        K  E        +T E      Y     +   + 
Sbjct: 193 KEERQTLLFSAT-FNQDVLNLASMWTKSAEFVEIEPEQKTAERVKQTVYLVGEDEKLPVL 251

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +  ++  I+F N++    +L   L  QG  V  + G I Q  R+K L  FK G+I
Sbjct: 252 VNYLQRPEVEKAIVFANRRDQCRDLDEDLRNQGVKVALMSGEIAQNKRLKTLEQFKNGSI 311

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+A RG+ +  V HVFN+++P+ AE+Y+HRIGRTGRAG+HG + +  +++D   
Sbjct: 312 QVLVATDVAGRGIHVDGVTHVFNYNLPDNAEDYVHRIGRTGRAGKHGVSVSFASEDDAFS 371

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK--NNPIPQKSTGFDRRKKN 412
           + AIE  I +K+     D  +L   LEK  I +    R+   N       G  R+++N
Sbjct: 372 LPAIESYISQKLTTAVPD-EALMTELEKPPITRKRGGRRPQGNRSQGGRGGNQRQRRN 428


>gi|329945971|ref|ZP_08293658.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528419|gb|EGF55397.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 557

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 137/418 (32%), Positives = 216/418 (51%), Gaps = 19/418 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD G+ P++  A+   G   P PIQ  T+P+ L+  D+ G A+TGTGKT  F +P+L 
Sbjct: 67  TFADFGVEPEICEALAAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLM 126

Query: 62  ILEKGRARVRM-------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                             P+ L++ PTRELA QVA+          + +  + GG  +E 
Sbjct: 127 DTLGPGEEGWDEDPASGSPQGLVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEP 186

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERGA+V++ TPGR++D  +RG L + ++  +V+DEAD MLD+GF+P ++ I +  
Sbjct: 187 QIEDLERGAEVVVGTPGRLIDLMDRGVLDLTHVTTVVLDEADEMLDLGFLPDVEKILART 246

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              R T+LFSATM   +  ++  ++  P  I    P     T++      Y  +S     
Sbjct: 247 RADRHTMLFSATMPGAVVTLARRYMTRPTHIRAQDPGDEGMTVQTVQQVVYRTHSMNKVE 306

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +   +     IIF   K+    +   L  +GF+  A+HG++ Q +R + L  F+  
Sbjct: 307 VVARILQAEGRGRTIIFARTKRTAARVADDLRARGFATAALHGDLGQGAREQALRAFRND 366

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+  P   + Y+HRIGRTGRAG  G A T V  +D+
Sbjct: 367 KVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFVDWDDV 426

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
                I K +   ++           P+E    ++H  +  +  IP+K TG   R K 
Sbjct: 427 PRWRIIAKALGLPIEE----------PVETYHTSEHLFS--DLSIPEKVTGRLPRHKR 472


>gi|307189252|gb|EFN73695.1| Probable ATP-dependent RNA helicase DDX46 [Camponotus floridanus]
          Length = 1028

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 141/443 (31%), Positives = 226/443 (51%), Gaps = 17/443 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G++ K +  +   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 367 SWAQCGVTKKELEVLKKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFR 426

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  LI+ PTREL  Q+  + +K+ K+  L+   + GG     Q  +L
Sbjct: 427 HILDQPPLADGDGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHVCVYGGTGISEQIAEL 486

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 487 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIMENVRP 546

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT   +++ ++   L  P  ++V   S   +           +  +K   L 
Sbjct: 547 DRQTVLFSATFPRQMEALARRILTRPVEVQVGGRSVVCKD--VEQHVVVLEEDQKFYKLL 604

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L       + IIF ++++N   L   L K  +S  ++HG IDQ  R   + +FK G  
Sbjct: 605 EILGHYQDKGSIIIFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTILDFKAGRT 664

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  E  ++
Sbjct: 665 KLLVATSVAARGLDVKHLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITSEQERY 724

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I +           +L+ +  P     + +   AR+     Q  TG     K +   
Sbjct: 725 AGDILRA---------HELAGVPVPEPLRQLWEGYKARQAADGKQVHTGGGFSGKGFKFD 775

Query: 417 KSHIPL-KESEKISKLQQDIQEN 438
           +S   L  E +K  K    +Q++
Sbjct: 776 ESEAALANEKKKFQKAALGLQDS 798


>gi|85712866|ref|ZP_01043908.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
 gi|85693330|gb|EAQ31286.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
          Length = 587

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 128/373 (34%), Positives = 209/373 (56%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ L   V+  +   G+ +PTPIQ + IP +L+ +DV G AQTGTGKTA+F LP L
Sbjct: 8   VSFQDMALPSVVLNQLEALGFTQPTPIQQQAIPSLLEGNDVLGEAQTGTGKTAAFSLPAL 67

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKL 119
             +E  + + +    L++ PTRELA QVAD  E + K         + G   F  Q + L
Sbjct: 68  ASIEANQRQTQ---MLVVTPTRELAIQVADAIESFSKQMKGMEVATVYGGSAFGPQIQAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA V++ TPGR++D  N+  L ++ +   V+DEAD ML+MGFI  I+ I   VP T Q
Sbjct: 125 KRGASVVVGTPGRLIDLLNKKVLKLDGLRFAVLDEADEMLNMGFIEDIETILQSVPDTAQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   ++K+++ +L +P  I +         I                     +
Sbjct: 185 RALFSATMPTAIRKLAKTYLTDPVNIRIAPVEQAKANIRQRAWKVMGMTKMTALTRLLEV 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  ++F   +++ +++   L++QGF    + G+++Q  R + ++  + G I+++
Sbjct: 245 TEY---QRALVFVRTRQDTMDVAELLQRQGFRAAPLSGDLNQAQREQTVTQLRSGHIKVL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+ ARGLD+P++ HV N+D+P+  E+Y+HRIGRTGRAGR G+A      ++   +  
Sbjct: 302 VATDVVARGLDVPEITHVINYDLPSDTESYVHRIGRTGRAGRSGEAILFYRGKERHLLRH 361

Query: 360 IEKLIEKKVDWLN 372
            EKL    +++ +
Sbjct: 362 YEKLTNGSIEYFD 374


>gi|281424769|ref|ZP_06255682.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           F0302]
 gi|281401139|gb|EFB31970.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           F0302]
          Length = 625

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 138/385 (35%), Positives = 222/385 (57%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F +LG+S  +  A+ + G+  P P+Q + IP +L    DV  +AQTGTGKTA+F LP+L
Sbjct: 3   TFEELGVSEDIRRAIEELGFEHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAFGLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             ++      +     +L PTREL  Q+AD+ + + K  N    + + G      Q + +
Sbjct: 63  QKVDAQNRATQAI---VLSPTRELCVQIADDLKDFSKYINGMNIVPVYGGADIRPQIRTI 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  +++ TPGR++D  NRG + +N +  +V+DEAD ML+MGF   I  I   +P  R 
Sbjct: 120 KHGVQIVVATPGRLVDLINRGVMELNQVNNVVLDEADEMLNMGFSDSINAIFEQLPDDRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E++KV++++L + K I V + +  AE + H     Y  +SK   L  + +
Sbjct: 180 TLLFSATMSREVEKVAKSYLHDYKEIVVGSRNEGAEHVNH---IYYLVHSKDKYLALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIFC  K     +   L K G++  A+HG++ Q+ R   +  F++ T+QL+
Sbjct: 237 VDFHPRIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHTVQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G + +++  ++   +  
Sbjct: 297 VATDVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHVKEKWKVRQ 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IEK I K  D+++G+L       +K
Sbjct: 357 IEKQIGK--DFIDGELPKPEEICKK 379


>gi|225718584|gb|ACO15138.1| Probable ATP-dependent RNA helicase DDX47 [Caligus clemensi]
          Length = 470

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 111/368 (30%), Positives = 184/368 (50%), Gaps = 3/368 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLGL+  +  A    G+  P+ IQ + IP+ L   DV G+A+TG+GKT +F LP+L 
Sbjct: 31  SFSDLGLTEVLCEACESQGWKTPSKIQKEAIPVALTGRDVIGLAETGSGKTGAFALPVLQ 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     LIL PTRELA Q+++ FEK GK+  +   +L+GG+   +Q   L +
Sbjct: 91  ALLEKPQRLFA---LILTPTRELAYQISETFEKLGKSIGIKCGVLVGGMDMMSQALVLGK 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++DH    K         +I +    +         +         +  
Sbjct: 148 KPHIIVATPGRLIDHMENTKGFDLRSLKYLIMDEADRILNMDFEIEVDKILSSLPRGEGR 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
                     +KV++    + +       SS  +T++           K   +    + +
Sbjct: 208 KNMLFSATMTKKVAKLQRASLQNPVRVEVSSKYQTVDKLLQYYLFIPLKYKEMYLVHIIN 267

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + IIF +     + L   L   GF+   ++G + Q  R+  L+ FK  +  +++A
Sbjct: 268 ELAGNSFIIFSSTCSGTLKLALLLRNLGFTAIPLNGQMSQNKRLASLNKFKTKSRSILIA 327

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR G+A T V + D++    IE
Sbjct: 328 TDVASRGLDIPHVDIVINYDIPTHSKDYIHRVGRTARAGRSGRAITFVCQYDVELYQRIE 387

Query: 362 KLIEKKVD 369
            LI KK+ 
Sbjct: 388 TLIGKKLP 395


>gi|90075746|dbj|BAE87553.1| unnamed protein product [Macaca fascicularis]
          Length = 396

 Score =  156 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 133/369 (36%), Positives = 204/369 (55%), Gaps = 3/369 (0%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA--RV 70
           +  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  +       R 
Sbjct: 1   MDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERG 60

Query: 71  RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130
             P  L+L PTRELA QV    + YGK   L    + GG P   Q + LERG ++ I TP
Sbjct: 61  DGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATP 120

Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190
           GR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL++SAT   E
Sbjct: 121 GRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 180

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ-DTMKNGI 249
           +++++E+FL++  +I V     +A       V    +  K   L+Q + +   +     I
Sbjct: 181 VRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTI 240

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           IF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   +++A+D+A+RGL
Sbjct: 241 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKGQPERDWVLNEFRSGKAPILIATDVASRGL 300

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           D+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    + K++E+   
Sbjct: 301 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQ 360

Query: 370 WLNGDLSSL 378
            +N  L  L
Sbjct: 361 AINPKLMQL 369


>gi|84468270|dbj|BAE71218.1| putative DEAD-box protein abstrakt [Trifolium pratense]
          Length = 588

 Score =  156 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 130/394 (32%), Positives = 211/394 (53%), Gaps = 16/394 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     ++  +   G V+PTPIQ++ +P++L   D+ GIA TG+GKT  FVLPM+ 
Sbjct: 144 NFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIM 203

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
           +  +    + +     P  LI+ P+RELA Q  +  E++           L   L IGGI
Sbjct: 204 MAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEQFLLPLKEAGYPELRPLLCIGGI 263

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + +++G  +++ TPGR+ D   + K+ ++N   L +DEADR++D+GF   I+ +
Sbjct: 264 DMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 323

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q     F ++     +      A       +       +
Sbjct: 324 FDHFKAQRQTLLFSATMPTKIQN----FARSALVKPIIVNVGRAGAANLDVIQEVEYVKQ 379

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IFC  K +V ++   L  +G    AIHG  DQ  R   +S+
Sbjct: 380 EAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISS 439

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 440 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 499

Query: 351 KEDIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
           K   +  +  ++ L+++    +   L+ LN P+E
Sbjct: 500 KNQSETTLLDLKHLLQEAKQRIPPVLAELNDPME 533


>gi|326533288|dbj|BAJ93616.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 463

 Score =  156 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 113/375 (30%), Positives = 189/375 (50%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+  P+PIQ  ++P+ L   D+   A+ GTGKT ++V+P+L 
Sbjct: 43  EFEDYCLKRELLMGIFEKGWETPSPIQESSVPIALTGRDILARAKNGTGKTGAYVIPILE 102

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  + +++    LI+ PTRELA Q +    +  K+    V    GG   +    +L++
Sbjct: 103 RIDVSKDKIQA---LIIVPTRELALQTSQICIELSKHMGCKVMATTGGTNLKEDIMRLQQ 159

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGRILD   +G  +M+   +LV+DEAD++L   F   + ++ S +P  RQ L
Sbjct: 160 QVHVIIATPGRILDLMKKGLAVMDTCSMLVMDEADKLLSQDFKNMLDSVISYLPPDRQIL 219

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    + +    F++               T++           K+       L S
Sbjct: 220 LYSATFPCTVDQ----FIKKHMHNPYEINLMEELTLKGITQYYAYVQEKQKVHCLNTLFS 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+S   IH  + Q  R +I  +F+ G  + +V 
Sbjct: 276 KLQINQSIIFCNSTQRVELLAKKITELGYSCFYIHAKMRQEHRNRIFHDFRNGACRNLVC 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  L+  +D   +  IE
Sbjct: 336 SDLFTRGIDIQAVNVVINFDFPKMSETYLHRIGRSGRFGHLGIAINLITYDDRYALHKIE 395

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 396 QELGTEIKPIPKVID 410


>gi|254360747|ref|ZP_04976895.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica PHL213]
 gi|153091317|gb|EDN73291.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica PHL213]
          Length = 411

 Score =  156 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 129/408 (31%), Positives = 210/408 (51%), Gaps = 9/408 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   V+ A+   G+   TPIQ KT P+ L+  D+ G AQTGTGKT +F++     
Sbjct: 10  FIDFPIHANVLNALDSKGFEFCTPIQAKTFPITLKGKDIAGQAQTGTGKTLAFLIATFNH 69

Query: 63  LEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L           PR LIL PTRELA Q+  + E + K+ +L +AL  GG  ++ Q +++E
Sbjct: 70  LLNNEIETSKNQPRALILAPTRELAVQIGADAELFLKHSDLKLALAYGGDGYDKQVQEIE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P   + 
Sbjct: 130 KGVDILVGTTGRVIDYVKQGIINLDKIQVIVLDEADRMFDLGFIKDIRYLMRKAPKPSER 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L    + T   +     +        +       +T        +   ++    L   L 
Sbjct: 190 LTLLFSATLSAKVRELAYEDMDNAEYI-EIEPLQKTGHRIKEELFYPSNEDKMALLLTLL 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  +IF N K     +   L   G  V  + G+I Q+ R+ +L NF +G + ++V
Sbjct: 249 EEEWPERCMIFANTKHKCEEIWQYLSADGHRVGMLTGDIPQKKRLSLLDNFTKGNLDILV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARGL IPDV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +    ++ AI
Sbjct: 309 VTDVAARGLHIPDVTHVFNYDLPDDKEDYVHRIGRTGRAGESGHSISFACERYAVNLPAI 368

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           E+ I  ++     D  SL      + + + N +R       K+    R
Sbjct: 369 EEYIGHQIPVSQYDKESL------LTLPKVNRSRSKKTFLAKTKKNSR 410


>gi|159037848|ref|YP_001537101.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           arenicola CNS-205]
 gi|157916683|gb|ABV98110.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
           CNS-205]
          Length = 574

 Score =  156 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 140/366 (38%), Positives = 206/366 (56%), Gaps = 1/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL  +++ A+   GY +PTPIQ + IP +L   D+ G A TGTGKTA+F LP+L  
Sbjct: 18  FVDLGLRDELLAALAALGYEEPTPIQREAIPPLLAGRDLLGQAATGTGKTAAFALPLLQR 77

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +   R     P  L+L PTRELA QV++ F +YGK     V  + GG P   Q + L+ G
Sbjct: 78  MSVDRP-TGDPVALVLVPTRELAVQVSEAFHRYGKELGTRVLPIYGGQPIGRQLRALDSG 136

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR LDH  RG L + ++  +V+DEAD MLDMGF   I+ I    P  RQT+L
Sbjct: 137 VDVVVATPGRALDHIARGTLRLGDVGTVVLDEADEMLDMGFAEDIEAILEHAPEQRQTVL 196

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +  ++   L +P RI +      A        + Y             +   
Sbjct: 197 FSATMPARIDGMARAHLTDPIRILIAREQPVAGEAPRVRQSAYLVARAHKPAALGRVLDI 256

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           ++    I+FC  ++ V  L  ++  +G+   A+HG + Q  R +++   + GT  L++A+
Sbjct: 257 ESPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLMAT 316

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  + HV N+DVP+  E+Y+HRIGR GRAGR G A TL      + +  IE+
Sbjct: 317 DVAARGLDVEQLSHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPRAHRMLKTIER 376

Query: 363 LIEKKV 368
           +  +++
Sbjct: 377 VTGQRI 382


>gi|307109616|gb|EFN57854.1| hypothetical protein CHLNCDRAFT_6836 [Chlorella variabilis]
          Length = 461

 Score =  156 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 147/389 (37%), Positives = 218/389 (56%), Gaps = 7/389 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   G    ++ A+  AGY KPT IQ + +P  L   DV GIA+TG+GKTA+FVLPM+ 
Sbjct: 64  TFKQCGFDGPLMAAITKAGYQKPTAIQAQALPAALCGRDVLGIAKTGSGKTAAFVLPMIV 123

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       +   P  +I+ PTRELA Q+     ++ K YNL VA   GG+    Q K L
Sbjct: 124 HIMDQPELQKGEGPIGVIVAPTRELAEQIHKETRRFSKAYNLGVAAAFGGLSKHQQFKDL 183

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G +V +CTPGR++D        M     LV DEADRM DMGF P +++I   +   RQ
Sbjct: 184 KAGCEVAVCTPGRMIDLIRMKACNMKRATYLVFDEADRMFDMGFEPQVRSIMGQIRPDRQ 243

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  ++++++ + L +P RI V       E I+      +   SK+  LL +L 
Sbjct: 244 TLLFSATMPRKVERLAGDALTSPVRITVGEVGGANEDIKQVVEVVHDLGSKQKWLLDRLQ 303

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D     ++F NQK  V  L  +L+  G  V AIHG++DQ +RM  L++FK G    +
Sbjct: 304 RFIDDGD-VLVFANQKARVDELAAALQAAGAKVAAIHGDMDQHTRMHTLADFKAGAYHAL 362

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIKHID 358
           VA+D+AARGLDI  +  V N+D     + ++HRIGRTGRAG + G A+TL+   + +   
Sbjct: 363 VATDVAARGLDIKSIKTVVNYDAAKDIDTHVHRIGRTGRAGDKDGVAYTLLLPHETRIAG 422

Query: 359 AIEKLI---EKKVDWLNGDLSSLNPPLEK 384
            + + +    ++V  +  +L++ +P   K
Sbjct: 423 DLVQNLATAGQEVPAMLHELAARDPRFRK 451


>gi|146184027|ref|XP_001027635.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|146143373|gb|EAS07393.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 713

 Score =  156 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 144/414 (34%), Positives = 220/414 (53%), Gaps = 10/414 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + + D      ++  V  A + KP+PIQ    P+VL  HD+ GIA+TG+GKT SF+LP  
Sbjct: 101 LSWTDTHFPQYIMNEVTHAKFEKPSPIQSLAFPVVLSGHDLIGIAETGSGKTLSFLLPSI 160

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +    +    +   P  L+L PTRELA Q+    E++GK+  L  A + GG    +Q   
Sbjct: 161 VHINAQPTVKKGDGPIVLVLAPTRELAMQIERESERFGKSSKLKCACIYGGADKYSQRAL 220

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G DV+I TPGR++D        +  +  LV+DEADRMLDMGF   I+ I   +   R
Sbjct: 221 LQQGVDVVIATPGRLIDFLESETTTLRRVTYLVLDEADRMLDMGFEIQIRKILGQIRPDR 280

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT    +Q +++++ +N            A       +      SKK   L + 
Sbjct: 281 QTLMFSATWPKNVQNLAQDYCKNTPVYVQIGKHELAINERIKQIVYVTDQSKKINQLIKQ 340

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L         +IF   KK   ++   L K+GF   AIHG+  Q+ R  +++ FK G  ++
Sbjct: 341 LDCLTQKDKVLIFAQTKKGCESMSRILNKEGFKCLAIHGDKAQKDRDYVMNKFKSGECRI 400

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLD+ DV HVFN+D P   E+Y+HRIGRTGRAG +G A + +  ED K   
Sbjct: 401 LIATDVASRGLDVKDVSHVFNYDFPKVMEDYVHRIGRTGRAGAYGCAVSFLTFEDDK--- 457

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
              K+  + V  L+     +  P++ +D+A  N   +       S+ +D +K N
Sbjct: 458 ---KISREYVQMLHDAKQEI--PIDLLDLASINPRYRTQYKTVSSSYYDIKKFN 506


>gi|42521033|ref|NP_966948.1| DEAD-box ATP dependent DNA helicase [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410774|gb|AAS14882.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 408

 Score =  156 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 154/420 (36%), Positives = 224/420 (53%), Gaps = 20/420 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++GL   +  A+       PTPIQI+ IPL LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFHEMGLPASLRQALDKNNLFVPTPIQIQAIPLALQGKDILGSAQTGTGKTLAFAIPLVA 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEK-YGKNYNLTVALLIGGIPFEAQNKKLE 120
            L            L++ PTRELA QV +   K   +N  L VALLIGG P   Q  +L+
Sbjct: 63  KL---LNEPNTGSALVIVPTRELAHQVTNEIRKLLSQNSALRVALLIGGEPIFRQLNQLQ 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++I TPGRI+DH  R  L+  N+ +LV+DE DRM DMGF   I+ I   +P  RQT
Sbjct: 120 KKPQIVIGTPGRIIDHIERKTLITRNVSVLVLDETDRMFDMGFGVQIEEIMKHLPKIRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+  ++ K++E +L  P+RI V+       T            S+     + + Q
Sbjct: 180 LMFSATLPGDIVKLAEKYLNRPERISVD----CEATTSVKIKQEIVYASESEKYEKLVTQ 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + IIF   K+    L + L K  +S  AIHG++ Q  R +++++F+ G  Q+MV
Sbjct: 236 LCQREGSIIIFVKTKRGADQLANRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP + HV N+D P    +YIHRIGRT RAG  G A + V  +D + + A+
Sbjct: 296 ATDVASRGLDIPHIQHVINYDAPQSQADYIHRIGRTARAGAEGYALSFVTPQDKRRLPAL 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
                 K   LN D S        +   + N  +         T + R+K N   +KS +
Sbjct: 356 AD----KEGELNFDCS--------VQFKKRNSKKVFKRPSTLKTKYGRKKINAFKKKSRV 403


>gi|20092752|ref|NP_618827.1| ATP-dependent RNA helicase [Methanosarcina acetivorans C2A]
 gi|19918045|gb|AAM07307.1| ATP-dependent RNA helicase [Methanosarcina acetivorans C2A]
          Length = 555

 Score =  156 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 134/401 (33%), Positives = 211/401 (52%), Gaps = 15/401 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F  LGLS   + A+   G+ +PTPIQ K IPL L+   D+ G AQTGTGKT +F  P++
Sbjct: 6   KFKALGLSDSTLKALKKKGFEEPTPIQEKVIPLFLKGESDIIGQAQTGTGKTTAFGAPII 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + +   +    + +IL PTRELA QV++       +  L V  + GG     Q + L+
Sbjct: 66  EKIPE---KSGYVQAIILTPTRELAIQVSEELNSIKGDKKLHVVPIYGGQSMTQQLRVLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+++ TPGRI+DH  R  L + +I   V+DEAD ML+MGFI  I+ I       ++ 
Sbjct: 123 SGVDIVVGTPGRIIDHLERKSLDLEHIAYFVLDEADEMLNMGFIDDIKEILKATGPDKRM 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   +  + + ++QN + + +      A+  E      +             + 
Sbjct: 183 LFFSATMPKPILGIVKKYMQNYEHVTIEKEELAAKLTEQ---IYFEVQENDKFEALSRII 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +    G++FC  K +   L   L  +G+   A+HG++ Q+ R KIL+ F++  I ++V
Sbjct: 240 DIEDEFYGLVFCRTKTDTGQLAQKLSDRGYEADALHGDLSQQEREKILNKFRKQKINVLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T V   + + +  I
Sbjct: 300 ATDVAARGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEFRRLTYI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           +K    K +   G +  +       D+ +   AR    + +
Sbjct: 360 KKT--SKSEMKKGRIPEIK------DVIKAKRARVKAELEE 392


>gi|328786029|ref|XP_001122722.2| PREDICTED: probable ATP-dependent RNA helicase DDX46-like [Apis
           mellifera]
          Length = 1030

 Score =  156 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 140/443 (31%), Positives = 226/443 (51%), Gaps = 17/443 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G++ K +  +   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 369 SWAQCGVTKKELEVLKKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFR 428

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  LI+ PTREL  Q+  + +K+ K+  L+   + GG     Q  +L
Sbjct: 429 HILDQPPLADGDGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHVCVYGGTGISEQIAEL 488

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 489 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIMENVRP 548

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT   +++ ++   L  P  ++V   S   +           +  +K   L 
Sbjct: 549 DRQTVLFSATFPRQMEALARRILTRPVEVQVGGRSIVCKD--VEQHVVVLEEDQKFYKLL 606

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L       + IIF ++++N   L   L K  +S  ++HG IDQ  R   + +FK G  
Sbjct: 607 EILGHYQDKGSAIIFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTILDFKAGRT 666

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  E  ++
Sbjct: 667 KLLVATSVAARGLDVKHLILVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITSEQERY 726

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I +           +L+ +  P     + +   AR+     +  TG     K +   
Sbjct: 727 AGDILRA---------HELAGVPVPEPLRQLWEGYKARQAADGKKVHTGGGFSGKGFKFD 777

Query: 417 KSHIPL-KESEKISKLQQDIQEN 438
           +S   L  E +K  K    +Q++
Sbjct: 778 ESEAALANEKKKFQKAALGLQDS 800


>gi|269218549|ref|ZP_06162403.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211660|gb|EEZ78000.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 767

 Score =  156 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 138/397 (34%), Positives = 221/397 (55%), Gaps = 12/397 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGL   ++ AV + G+  PT IQ   IP++L+  DV G+AQTGTGKTA+F LP+L  
Sbjct: 129 FDDLGLPEDLLSAVKELGFSAPTAIQAAAIPILLRGRDVVGVAQTGTGKTAAFALPLLAH 188

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV-ALLIGGIPFEAQNKKLER 121
           ++  +  V+    L+L PTRELA Q A   E +         A + GG  +  Q K LE 
Sbjct: 189 IDPEKREVQ---ALVLAPTRELAMQGAQAIESFAAKSRGVDVAAVYGGSSYLPQLKALEG 245

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+D  +RG L ++ +   V+DEAD ML MGF   ++ I S VP  R + 
Sbjct: 246 GAQVVVGTPGRIMDLMDRGALRLDAVRYFVLDEADEMLRMGFAEDVEKIASEVPEGRISA 305

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +++V+E  L + + + ++ P++T  T+            +        + +
Sbjct: 306 LFSATMPPPIRRVAERHLSDAEEVTISRPATTVSTV---KQMYAVVPERHKIGALARVLA 362

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  ++F   +    +L   L  +G +  A+ G++ Q+ R K+++  ++GT+ ++VA
Sbjct: 363 VTEAQAALVFVRTRSTAEDLTIELGARGVATAALSGDVVQKEREKLVARLRDGTLDVLVA 422

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +G V NFDVP   + Y+HRIGRTGRAGR G++ T V  ++   +  IE
Sbjct: 423 TDVAARGLDVDRIGLVVNFDVPRETDTYVHRIGRTGRAGRTGESITFVTPKERPRLRRIE 482

Query: 362 KLIEKKVDWL----NGDLSSLNPPLEKIDIAQHNHAR 394
           K    +++ +      ++S L      ++ A    A+
Sbjct: 483 KQTGSRMEQIELPTPAEVSKLRA-RRTVEQAMARVAK 518


>gi|212635941|ref|YP_002312466.1| DEAD box family ATP-dependent RNA helicase [Shewanella
           piezotolerans WP3]
 gi|212557425|gb|ACJ29879.1| ATP-dependent RNA helicase, DEAD box family [Shewanella
           piezotolerans WP3]
          Length = 447

 Score =  156 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 120/384 (31%), Positives = 184/384 (47%), Gaps = 6/384 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F D  L  +++  +   G   PT IQ + IP+ L   D+   ++TG+GKT +F+LP M
Sbjct: 1   MQFTDFSLDQRLLQTLKHMGIDTPTEIQEQAIPIALAGKDLMASSKTGSGKTLAFLLPAM 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++       R PR +IL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRMISCKALSKRDPRAVILLPTRELATQVYSQLRLLVANTQFKATKILGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH  +  L +N +E+L+ DEADRMLD+GF   ++ I +     R+
Sbjct: 121 ARDPHFVVATPGRLADHLKQHHLHLNGLELLIFDEADRMLDLGFAEQLKQINNAADHKRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D                 V   +   E  +         +      L   +
Sbjct: 181 QTLMFSATLDHGDVDEIAAELLKTPEHVAIGAGNLEHKDITQRIFLCDHLDHKEALLSRI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  K  IIF   +++   L   L   GF   ++ G + Q +R +I+  F  G  Q++
Sbjct: 241 LKDEQQKQIIIFTATRQDTDRLAKKLADDGFKTASLSGELKQSARNQIMDEFSRGLQQIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +   
Sbjct: 301 VTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAVSLVGPKDWVNFTQ 360

Query: 360 IEKLIEKK-----VDWLNGDLSSL 378
           ++  + K+     ++ L G  + L
Sbjct: 361 VQTFLNKQFAFSELEGLKGKFTGL 384


>gi|195394063|ref|XP_002055665.1| GJ19487 [Drosophila virilis]
 gi|194150175|gb|EDW65866.1| GJ19487 [Drosophila virilis]
          Length = 953

 Score =  156 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 122/376 (32%), Positives = 198/376 (52%), Gaps = 11/376 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L P ++  +   G+ KPT IQ +  P+ L   D+ GIAQTG+GKT +++LP + 
Sbjct: 238 NFEESSLPPHIIDEMKRQGFTKPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIV 297

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNK 117
               +    R   P  L+L PTRELA Q+      YG           + GG     Q +
Sbjct: 298 HIGNQPPIMRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQAR 357

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LERG +V+I TPGR++D        +     LV+DEADRMLDMGF P I+ I   +   
Sbjct: 358 DLERGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 417

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ- 236
           RQ +++SAT   E+Q ++ +FL +  +I + + + +A       V    +  K   +++ 
Sbjct: 418 RQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICNENEKPQRMVRL 477

Query: 237 ------QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
                     + +     IIF   K  V ++   +  +G++  +IHG+  Q  R  +L +
Sbjct: 478 LKDIAPTTNNAANNGNKIIIFVETKIKVEDILQIIRSEGYTATSIHGDKSQSERDSVLKD 537

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   +++A+D+A+RGLD+ D+  V N+D PN +ENY+HRIGRTGR  + G A+T   
Sbjct: 538 FRNGKSNILIATDVASRGLDVEDLQFVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFT 597

Query: 351 KEDIKHIDAIEKLIEK 366
            ++ K    +  ++E+
Sbjct: 598 PDNAKQARELISVLEE 613


>gi|321466431|gb|EFX77426.1| hypothetical protein DAPPUDRAFT_213372 [Daphnia pulex]
          Length = 478

 Score =  156 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 134/438 (30%), Positives = 217/438 (49%), Gaps = 11/438 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L +   ++  + + G  KPTP+QI  IP +L   D  G  +TG+GKT +F LP++ 
Sbjct: 10  TFNSLKIDEWLIKQIKNLGVDKPTPVQINCIPAILDGRDCIGCDRTGSGKTFAFALPIVQ 69

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L K          L+L PTRELA Q+AD F+  GK  NL +++++GG+    Q  +L  
Sbjct: 70  TLSK---DPYGIYALVLTPTRELAYQIADQFQIIGKPINLRMSVIVGGMGMMDQGIELSN 126

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR      +        I+ LV+DEADR+L+  F   +Q I   +P  RQT
Sbjct: 127 HPHIVIATPGRLADHLESCKTFSFKTIKYLVMDEADRLLEGNFDEQLQIIFQALPEKRQT 186

Query: 181 LLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT+TD L K       +          ++  E  +   +            + Q  
Sbjct: 187 LLFSATITDTLNKLREVALNKPFMWSAPVETATVEELDQRYILVPADFKDGYLVHVVQNF 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           + +    + I+F +  ++   L  +L + GF    +H  + QR R+  L+ F+  T++++
Sbjct: 247 REEKPKGSIIVFTDTCRSCQILSMTLLELGFQSLCLHSMMSQRERIATLTKFRSNTVKIL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDIP V  + N +VP+  + Y+HR+GRT RAGR G + TL+   DIK + A
Sbjct: 307 VATDVASRGLDIPTVQLIVNHNVPSNPKEYVHRVGRTARAGRGGFSLTLITPNDIKLLHA 366

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK-NYSSQKS 418
           IE  I K++         +   L ++ +      ++   I      F  +K+ N   +  
Sbjct: 367 IEGRICKELKEFKIKEKEVVKILTQVAV-----TKREQEINLDEQDFGEKKRINKRKKLI 421

Query: 419 HIPLKESEKISKLQQDIQ 436
              L   E   +++ DI+
Sbjct: 422 EKGLSPEEADREIEADIE 439


>gi|146163668|ref|XP_001012102.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|146145909|gb|EAR91857.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 533

 Score =  156 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 148/441 (33%), Positives = 233/441 (52%), Gaps = 11/441 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LG+  ++V A     YVKPT IQ +++   L++ D+  +A+TG+GKT +F LP++
Sbjct: 96  VTFQSLGVCEELVEACNRLKYVKPTAIQRESLVYTLKQRDIIALAETGSGKTLAFALPVI 155

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L       +    L+L PTREL  Q+A++FE  G   +L   +++GG+   AQ   L 
Sbjct: 156 QNLLDA---PQPFYALVLSPTRELCMQIAEHFEALGVGISLKTTVIVGGLDPMAQAIALS 212

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNI-EILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   ++I TPGRIL H    K       + LV+DEAD++L+M F   I  I  ++P  R 
Sbjct: 213 KKPHIIIGTPGRILYHMQNTKGFNFKALKFLVLDEADKLLNMDFEKDINQILDIIPKKRN 272

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT+++ K+    L++P +IEV++      T+           +K         
Sbjct: 273 TFLFSATMTNKVHKLQRASLKDPVKIEVSSKYQMVSTLVA---QYAFIPAKYKDCYLVYS 329

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      IIF     N + L   L   GFS   IHG + Q  R+  ++ FK G  +++
Sbjct: 330 LNEFAGNTSIIFVQTCLNAIKLTLMLRNLGFSAVTIHGQMSQVKRLGAINKFKSGEKKIL 389

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDIP V  V N+D+P  A+ Y+HR+GRT RAGR GKA + V + D++    
Sbjct: 390 VATDVASRGLDIPSVDLVINYDIPTNAKEYVHRVGRTARAGRAGKAISFVTQYDVEMYLK 449

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST----GFDRRKKNYSS 415
           IE LI KK+D    +   +    E++  AQ   A++   I +K        D   + YS 
Sbjct: 450 IEALIGKKLDQYKCEEYQVLVFNERVQEAQRIAAQEIKEIMEKKNNPLHDVDDEGEKYSK 509

Query: 416 QKSHIPLKESEKISKLQQDIQ 436
           + ++   K+S   SK  + ++
Sbjct: 510 KNANNNRKKSFNNSKNMKKMK 530


>gi|255544594|ref|XP_002513358.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223547266|gb|EEF48761.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 502

 Score =  156 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 133/396 (33%), Positives = 204/396 (51%), Gaps = 6/396 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL+   V    + G  +PTP+Q   IP +L+  DV G+AQTG+GKTA+F LP+L  
Sbjct: 65  FSNLGLAEWAVRTCKELGMKRPTPVQAHCIPKILEGKDVLGLAQTGSGKTATFALPILHR 124

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +          L++ PTRELA Q+A+ F   G   NL  A+++GG+    Q K L   
Sbjct: 125 LAE---DPYGIFALVITPTRELAYQLAEQFRALGSCLNLRCAVVVGGMDKLTQAKTLMAR 181

Query: 123 ADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             V+I TPGR+            + +  + LV+DEADR+LD+GF   ++ +   +P  RQ
Sbjct: 182 PHVVIATPGRVKVLLEDNPDIPSVFSKTKFLVLDEADRVLDVGFEDELRVVFQCLPKNRQ 241

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATMT  L+ + E         E      T +T++  +V           +     
Sbjct: 242 TLLFSATMTSNLESLLEVSANKAYFYEAYEGFKTVDTLKQQYVLVPKNVKDVYLVYILSK 301

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +++ IIF +  +    L   LE+      A+H    Q  R+  L  FK G   ++
Sbjct: 302 MEDMGIRSAIIFVSTCRTCYLLSLLLEELEKEPAALHSFKSQSLRLSALRRFKSGQASIL 361

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLDIP V  V N+D+P    +Y+HR+GRT RAGR G A + +++ D   I  
Sbjct: 362 IATDVASRGLDIPTVDLVVNYDLPRYPRDYVHRVGRTARAGRGGLAMSFISQNDFVLIRE 421

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           IE ++ K++       + +   + KI  A+H    K
Sbjct: 422 IEAVLGKQLGEFECKENEVLSDITKIFKARHVATMK 457


>gi|163868666|ref|YP_001609875.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476]
 gi|161018322|emb|CAK01880.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476]
          Length = 467

 Score =  156 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 150/432 (34%), Positives = 230/432 (53%), Gaps = 14/432 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   ++  +  AG  KP PIQ + IP++L+ HD+ GIAQTG+GKT +F LP+L+ 
Sbjct: 20  FTKLGLPTLLIKNLCIAGMSKPKPIQEQAIPMMLKGHDILGIAQTGSGKTLAFGLPILSQ 79

Query: 63  LEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     +         IL PTRELA Q+ +      K  +L+  L+ GG+    Q K++ 
Sbjct: 80  ILALGDKRCPKTARALILAPTRELAVQIDEAIRTMAKGAHLSTCLVFGGVSRLKQIKRMA 139

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D      + ++    L++DEADRMLDMGFI  ++ I  L+   RQT
Sbjct: 140 AGVDVLIATPGRLRDLVREKCVDLSQSRFLILDEADRMLDMGFIHDVKQIAKLLHQERQT 199

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  +++  L +P +IEV    +TA  I            K          
Sbjct: 200 ALFSATMPKEIAALAKCLLNDPVKIEVAPQGTTALEITQKLYCVPTSEKKNVLSKLL--- 256

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +     + I+F   K     +   L K G+ V  IHGN  Q +R   L  F+E +++++V
Sbjct: 257 TNPAFDSVIVFTRTKHGADAVTLHLAKNGYLVATIHGNKSQGARQSALKAFRERSVKILV 316

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+DIP + HV N+D+P+ AE+Y+HRIGRTGR G  G+A TL  ++ +   + A
Sbjct: 317 ATDIAARGIDIPGISHVINYDLPDEAESYVHRIGRTGRNGASGEALTLFDEKIERTRLRA 376

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           +E+LI  K+  D +    ++     EK++  Q      N     K +   +R++ +  +K
Sbjct: 377 VERLIRMKLVSDSVPEQFAAFP---EKLNALQSGEKENNKERRLKKS---KRQRRFLGRK 430

Query: 418 SHIPLKESEKIS 429
                 + +  S
Sbjct: 431 DDAAQLQRKNSS 442


>gi|328910410|gb|AEB62006.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens LL3]
          Length = 480

 Score =  156 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 143/371 (38%), Positives = 218/371 (58%), Gaps = 8/371 (2%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM 72
           + ++   G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F +P++  +         
Sbjct: 1   MKSINRMGFEEATPIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIPLVEKMNP---ESPN 57

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
            + +++ PTRELA QV++   K G++    V  + GG     Q + L++   +++ TPGR
Sbjct: 58  IQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPHIIVGTPGR 117

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           +LDH NR  + +NN+  +V+DEAD ML+MGFI  I++I S VP   QTLLFSATM   ++
Sbjct: 118 LLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIK 177

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           +++E F+  P+ ++V     T   I+           +K       L    + +  I+F 
Sbjct: 178 RIAERFMTEPEHVKVKAKEMTVSNIQQ---FYLEVQERKKFDTLTRLLDIQSPELAIVFG 234

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             K+ V  L  +L  +G++   IHG++ Q  RM  L  FKEG I+++VA+D+AARGLDI 
Sbjct: 235 RTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDIS 294

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
            V HV+NFDVP   E+Y+HRIGRTGRAG+ G A T +   +   + AIE+  ++K+D + 
Sbjct: 295 GVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMK 354

Query: 373 GDLSSLNPPLE 383
               +L+  LE
Sbjct: 355 --EPTLDEALE 363


>gi|193683325|ref|XP_001948746.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Acyrthosiphon pisum]
          Length = 985

 Score =  156 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 140/466 (30%), Positives = 230/466 (49%), Gaps = 19/466 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A  G+S K++  +    Y KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM   
Sbjct: 315 WAHCGVSKKIMDNLKKHNYEKPTPIQTQAIPAIMAGRDLIGIAKTGSGKTLAFLLPMFRH 374

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +           P  +++ PTREL  Q      K+ K+  L V  + GG     Q  +L+
Sbjct: 375 IMDQPPLEDTDGPIAIVMAPTRELCMQTGKEARKFTKSLGLRVVSVYGGTGISEQIAELK 434

Query: 121 RGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RGA++++CTPGR++D     N     +  +  +V+DEADRM DMGF P +  +   V   
Sbjct: 435 RGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRVIDNVRPD 494

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSAT   +++ ++   LQ P  +++   S  A+           +  +K   L +
Sbjct: 495 RQTVMFSATFPRQMEALARRILQKPVEVQIGGRSVVAKE--VEQHVIIVEEEQKFMKLLE 552

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L       + I+F +  +N   L   L K  +   ++HG IDQ  R   + +FK G I+
Sbjct: 553 VLGVYYERGSCIVFVDTHENADTLLQKLLKASYPCMSLHGAIDQYDRDSTIVDFKSGQIK 612

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+ +AARGLD+ D+  V N+D PN  E+Y+HR GRTGRAG  G A+TLV+ +  +  
Sbjct: 613 LLVATSVAARGLDVKDLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTLVSPDQERFA 672

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ-KSTGFDRRKKNYSSQ 416
             + + +E          S++  P     +     A++     Q  + G    K     +
Sbjct: 673 GDLIRALET---------SNVPVPESLRTMWLRYQAKQAAEGKQVHTGGGFSGKGFKFDE 723

Query: 417 KSHIPLKESEKISKLQQDIQEN--DADSLGFRGNMPAFMLPKNRGK 460
              +   E +K+ K    +Q++  +         +   + PK   K
Sbjct: 724 TEAVMANEKKKLQKAALGLQDSDDEDIEGDIDQQIETMLAPKRIVK 769


>gi|322785598|gb|EFZ12253.1| hypothetical protein SINV_05205 [Solenopsis invicta]
          Length = 725

 Score =  156 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 131/378 (34%), Positives = 205/378 (54%), Gaps = 2/378 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +      V+  +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP +  
Sbjct: 111 FEESNFPDYVMNEIKKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPAIVH 170

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  LIL PTRELA Q+      +G +  +    + GG P   Q + LE
Sbjct: 171 INNQPRLSRGDGPIVLILAPTRELAQQIQTVARDFGSSSCIRNTCIFGGSPKGPQARDLE 230

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 231 RGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 290

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+Q ++E+FL +  +I + + +  A       +    ++ K+  L Q L +
Sbjct: 291 LMWSATWPKEVQALAEDFLTDYIQINIGSLTLAANHNIRQIIEICQEHEKETKLSQLLRE 350

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   KK V ++  ++++ G+   +IHG+  Q  R  +LS F+ G   ++V
Sbjct: 351 IGAERSKMIIFVETKKKVDDITKTIKRDGWPAISIHGDKSQPERDYVLSEFRNGKTMILV 410

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV +V NFD PN +E+YIHRIGRTGR    G A+      + +    +
Sbjct: 411 ATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNNARQAKEL 470

Query: 361 EKLIEKKVDWLNGDLSSL 378
             ++E+    +N  L+ +
Sbjct: 471 IAVLEEAGQAINPQLAEM 488


>gi|299142021|ref|ZP_07035155.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           C735]
 gi|298576483|gb|EFI48355.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           C735]
          Length = 625

 Score =  156 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 138/385 (35%), Positives = 222/385 (57%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F +LG+S  +  A+ + G+  P P+Q + IP +L    DV  +AQTGTGKTA+F LP+L
Sbjct: 3   TFEELGVSEDIRRAIEELGFEHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAFGLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             ++      +     +L PTREL  Q+AD+ + + K  N    + + G      Q + +
Sbjct: 63  QKVDAQNRATQAI---VLSPTRELCVQIADDLKDFSKYINGMNIVPVYGGADIRPQIRTI 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  +++ TPGR++D  NRG + +N +  +V+DEAD ML+MGF   I  I   +P  R 
Sbjct: 120 KHGVQIIVATPGRLVDLINRGVMELNQVNNVVLDEADEMLNMGFSDSINAIFEQLPDDRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E++KV++++L + K I V + +  AE + H     Y  +SK   L  + +
Sbjct: 180 TLLFSATMSREVEKVAKSYLHDYKEIVVGSRNEGAEHVNH---IYYLVHSKDKYLALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIFC  K     +   L K G++  A+HG++ Q+ R   +  F++ T+QL+
Sbjct: 237 VDFHPRIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHTVQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G + +++  ++   +  
Sbjct: 297 VATDVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHVKEKWKVRQ 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IEK I K  D+++G+L       +K
Sbjct: 357 IEKQIGK--DFIDGELPKPEEICKK 379


>gi|254566021|ref|XP_002490121.1| Cytoplasmic DExD/H-box helicase [Pichia pastoris GS115]
 gi|238029917|emb|CAY67840.1| Cytoplasmic DExD/H-box helicase [Pichia pastoris GS115]
 gi|328350520|emb|CCA36920.1| ATP-dependent RNA helicase DDX6/DHH1 [Pichia pastoris CBS 7435]
          Length = 472

 Score =  156 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 115/379 (30%), Positives = 180/379 (47%), Gaps = 6/379 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L  +++  + +AG+ KP+PIQ ++IP+ L   D+   A+ GTGKTASFV+P L 
Sbjct: 29  SFESFHLKRELLMGIFEAGFEKPSPIQEESIPIALTGRDILARAKNGTGKTASFVIPSLQ 88

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +++   +LIL PTRELA Q +   +  GK+  + V +  GG        +L  
Sbjct: 89  KIKPKMNKIQ---SLILVPTRELALQTSQVVKTLGKHLGVQVMVSTGGTLLRDDIIRLND 145

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ-- 179
              VL+ TPGRILD  +R     +  +  ++DEAD+ML   F   I+ I +  P      
Sbjct: 146 PVHVLVGTPGRILDLASRKLAEFDQCKTFIMDEADKMLSREFRNVIEQIITFFPSRLPGG 205

Query: 180 -TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
                S   +       ++F+                T++           K+       
Sbjct: 206 ANAYQSLLFSATFPLTVKSFMDKHLYKPYEINLMDELTLKGITQYYAFVEEKQKLHCLNT 265

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S+  +   IIFCN  K V  L   L    +S    H  + Q SR K+   F++G ++ 
Sbjct: 266 LFSKLQINQSIIFCNSTKRVELLSKKLTDLDYSCYYSHARMPQASRNKVFHEFRQGHVRN 325

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ 
Sbjct: 326 LVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHFGIAINLINWDDRFNLY 385

Query: 359 AIEKLIEKKVDWLNGDLSS 377
            IE+ +  ++  +  ++  
Sbjct: 386 KIEQELGTEIKPIPSEIDK 404


>gi|311748030|ref|ZP_07721815.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1]
 gi|126575012|gb|EAZ79370.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1]
          Length = 379

 Score =  156 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 141/376 (37%), Positives = 218/376 (57%), Gaps = 5/376 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M+F+DLGL+ +++ A+  A Y KP PIQI+ IP  L R D+ GIA TG+GKTAS++LP+ 
Sbjct: 3   MNFSDLGLNKQLLTAIEKAKYTKPYPIQIEAIPAFLNRKDILGIAPTGSGKTASYILPIL 62

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV-ALLIGGIPFEAQNKK 118
             +  K   R R    L+L PTRELAAQVA   + + +     +  L + G         
Sbjct: 63  QLLQGKKEHRSRNIPVLVLVPTRELAAQVAQVADNFSRFLERRIKTLAVFGGVSINPQMM 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              G D+L+ TPGR+LD  ++  L ++++EILV+DE D++L+MGF   +  I + +P  R
Sbjct: 123 KLNGTDILVATPGRLLDLLSKNALSISDVEILVLDEMDKVLNMGFREEVDQILADIPKNR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT  + L++V  + L++PKRI V         I       Y   ++K   L + 
Sbjct: 183 QTILFSATQDETLEEVISSLLKDPKRISVKAAEVDMNLI---NQYAYRISAEKKGPLLRH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +       ++F +  +   NL   L K G    A HG+  Q +R + L+ FK G  ++
Sbjct: 240 IINSGDWSQILVFTSSIRTANNLVQKLVKNGIDALAFHGDKSQGARTEALARFKSGKTRV 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLA RG+DI  +  V NF++P   ++Y+HR+GRTGRAG  G+A +L+ +ED+ H  
Sbjct: 300 LVATDLAGRGIDIQFLPLVINFELPRSPKDYVHRVGRTGRAGATGEAISLITEEDLHHFK 359

Query: 359 AIEKLIEKKVDWLNGD 374
            I+K ++K V   + D
Sbjct: 360 IIQKKMKKHVQLRSTD 375


>gi|283779400|ref|YP_003370155.1| DEAD/DEAH box helicase domain-containing protein [Pirellula staleyi
           DSM 6068]
 gi|283437853|gb|ADB16295.1| DEAD/DEAH box helicase domain protein [Pirellula staleyi DSM 6068]
          Length = 458

 Score =  156 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 155/449 (34%), Positives = 239/449 (53%), Gaps = 14/449 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA + LS +++ A+  AGY  PTPIQ   IP  L+  DV G A+TGTGKTASFV+P+L 
Sbjct: 13  TFASMDLSDQMMAALEKAGYEYPTPIQAGLIPRALEGVDVVGQARTGTGKTASFVIPILE 72

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+  R     P+ LIL PTRELA QV D   K  +   +  A + GG P ++Q  KL++
Sbjct: 73  LLDIERG-APTPQALILVPTRELAVQVRDEVVKLSEGLKINCAAVYGGKPIKSQVDKLKK 131

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH  RG +   +IE +V+DEADRMLD+GF P I+ I    P  RQTL
Sbjct: 132 GCHVVVGTPGRVLDHIARGTIDFTHIECVVLDEADRMLDIGFRPDIERILKRCPRERQTL 191

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+   + K+++ ++  P+ +  +    + +TIE  +            +       
Sbjct: 192 LLSATVPPPIAKLAQRYMYEPEMLNFSPADVSVDTIEQKYFTVEHDRKFDLLMKLL---L 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++  K  I+FC  K+    +   L K+  +  AIHG++ Q  R ++++ F++G+++ +VA
Sbjct: 249 REEPKQAIVFCRTKRGTDKVYQKLTKKLGNTAAIHGDLSQGQRDRVMAGFRDGSVRYLVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+  RG+D+  V H+ NFD+P   ++Y+HR+GRTGR GR G A+T V  ++   +  IE
Sbjct: 309 TDVIGRGIDVSTVSHIVNFDIPVFCDDYVHRVGRTGRMGREGVAYTFVCPDEGHELTRIE 368

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS---QKS 418
           + I K +     ++    P            AR      Q  +G      N S     +S
Sbjct: 369 ERINKLLKR--DEMRDFEPV-----GYGERSARAPAAPTQVISGKYMHGGNASGVAPTES 421

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRG 447
             P +     ++      E     LG RG
Sbjct: 422 ATPSEGDSPAAEAAPAATEKRDSGLGKRG 450


>gi|147904603|ref|NP_001080569.1| ATP-dependent RNA helicase DDX42 [Xenopus laevis]
 gi|82209788|sp|Q7ZY47|DDX42_XENLA RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|27696431|gb|AAH43977.1| Ddx42-prov protein [Xenopus laevis]
          Length = 947

 Score =  156 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 136/411 (33%), Positives = 224/411 (54%), Gaps = 4/411 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + IP+ L   D+ GIA+TG+GKTA+F+ P+  
Sbjct: 251 SFAHFGFDEQLLHQIRKSEYTQPTPIQCQGIPVALSGRDMIGIAKTGSGKTAAFIWPILV 310

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 311 HIMDQKELQPADGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKAL 370

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I + V   RQ
Sbjct: 371 QEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIANHVRPDRQ 430

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E I        +   K   L ++L+
Sbjct: 431 TLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQVVEILPSGPEKWTWLTRRLV 490

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   T  + ++F  +K N   L  +L +    +  +HG++DQ  R K++S+FK+ +I ++
Sbjct: 491 EFTSTG-SVLVFVTKKANAEELAANLRQDDHPLGLLHGDMDQSERNKVISDFKKKSIPVL 549

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  ++      
Sbjct: 550 VATDVAARGLDIPSIKTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTSKESNFAGD 609

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKSTGFDRR 409
           + + +E    +++ +L  L         ++    + K   I     G+  R
Sbjct: 610 LVRNLEGANQYVSKELLDLAMQNSWFRKSRFKAGKGKKLNIGGGGLGYRER 660


>gi|311031661|ref|ZP_07709751.1| DEAD/DEAH box helicase domain protein [Bacillus sp. m3-13]
          Length = 435

 Score =  156 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 136/430 (31%), Positives = 216/430 (50%), Gaps = 24/430 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    + P ++ AV +  + KPT +Q + IP +L      G +QTGTGKT ++++P+L+
Sbjct: 4   TFEKFNVKPFILEAVKELRFQKPTEVQERMIPSLLNGESAIGQSQTGTGKTHAYLIPILS 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVAD----NFEKYGKNYNLTVALLIGGIPFEAQNK 117
            ++     V+     I  PTRELA Q+        +       +T    IGG   +    
Sbjct: 64  KIDPSLQEVQAV---ITAPTRELANQIYQEVLKITKFCSGEDMITARCYIGGTDKQRTID 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L++   +++ TPGRI D      LL++    +V+DEAD MLDMGFI  I  + + +P  
Sbjct: 121 RLKQQPHIVVGTPGRIKDLMVENALLVHTARTIVVDEADLMLDMGFIEDIDKVAAAMPKN 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+ ++L+     +++NPK   V     TA  I           SK    L  
Sbjct: 181 LQIMVFSATIPEKLKPFLRKYMENPKYTHVAPKQVTAAKI---KHLLMPVKSKSKTKLLH 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +      I+F N KK    +  +L +QG  V  IHG+++ R R K++    E   Q
Sbjct: 238 DLLVEYNPYLAIVFTNTKKKADEVADALLEQGLKVGRIHGDLNPRERKKMMKQINELEYQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N+++P+  + Y+HR+GRT RA   G A TL    D   +
Sbjct: 298 YVVATDLAARGIDIAGVSHVINYELPSDLDFYVHRVGRTARADYSGNAITLYEPTDENAL 357

Query: 358 DAIEKL-IE-KKVDWLNGDLSSLNP---------PLEKIDIAQHNHARKNNPIPQKSTGF 406
             IEK+ IE  ++D+ NG+L  + P          + +ID+A     +K+  +     G+
Sbjct: 358 AQIEKMGIEFTQIDFKNGELVEIGPRNKRQNRKKQINEIDVAAKTSVKKSTKV---KPGY 414

Query: 407 DRRKKNYSSQ 416
            ++ K    Q
Sbjct: 415 KKKHKYEVEQ 424


>gi|110638219|ref|YP_678428.1| ATP-dependent RNA helicase protein [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280900|gb|ABG59086.1| ATP-dependent RNA helicase protein [Cytophaga hutchinsonii ATCC
           33406]
          Length = 413

 Score =  156 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 128/373 (34%), Positives = 217/373 (58%), Gaps = 4/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F    L+P +  ++ +AG+ +PT IQ K+IP +L   DV  IAQTGTGKTA+FV+P +
Sbjct: 1   MKFESYDLAPGIKKSLAEAGFNRPTDIQFKSIPPILAGEDVLAIAQTGTGKTAAFVIPVL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            T++   ++       L++ PTRELA Q+++ F+K G    L    + GG+  EAQ    
Sbjct: 61  NTLINVKKSEHTDISCLVMAPTRELAVQISEVFKKIGAYTRLRTVCITGGVEQEAQIAAA 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D+L+ TPGR+ D   +  + +  ++ILV+DEAD MLD+GFI  IQ++   +P   Q
Sbjct: 121 DYGIDILVATPGRMFDLIYQKHIKITRVKILVLDEADHMLDLGFIKDIQDVKKFLPARHQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSAT+ +E++K++ + ++NP RI++      ++ I H          +      + L
Sbjct: 181 TLFFSATINEEIKKLAYSLVKNPIRIQIAPKDRVSKNITHSVAFIGMDDKRFF---LERL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      I+F   +     +  ++E+ G     +HG  +Q++R   +  FK GT+ ++
Sbjct: 238 LKEHPESKVIVFVRTQVRADRVQAAMERVGLKSVTMHGGKEQQARDAAMDAFKNGTVHVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D++ARG+DI  V +V N+D+P  AENY+HR+GRTGR    G A +  + E+   +D 
Sbjct: 298 IATDISARGIDIAGVEYVVNYDMPEVAENYVHRVGRTGRGVSKGFAISFCSMEEKPVLDE 357

Query: 360 IEKLIEKKVDWLN 372
           +E+ + K+++ + 
Sbjct: 358 VEEFLGKEINVIE 370


>gi|303237006|ref|ZP_07323578.1| DEAD/DEAH box helicase [Prevotella disiens FB035-09AN]
 gi|302482786|gb|EFL45809.1| DEAD/DEAH box helicase [Prevotella disiens FB035-09AN]
          Length = 382

 Score =  156 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 132/369 (35%), Positives = 219/369 (59%), Gaps = 8/369 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG+S ++  A+ + G+ +P P+Q   IP +L   +DV  +AQTGTGKTA++ +P+L
Sbjct: 3   TFEELGVSEEIRHAIEELGFEQPMPVQEAVIPYLLGNGNDVIALAQTGTGKTAAYGIPVL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKL 119
             ++  +   +    LIL PTREL  Q+AD+   + K      VA + GG   E Q+++L
Sbjct: 63  QKVDPTKKETQA---LILSPTRELCLQIADDLSDFSKYIGGLHVAAVYGGASIEMQSRQL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GA +++ TPGR++D   RG   + N+  +V+DEAD ML+MGF   I  I   +P  R 
Sbjct: 120 RKGAQIIVATPGRLIDLMKRGVAKLENVNNVVLDEADEMLNMGFTESINAIFEGIPSERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E++K+++++L + K I V + +  AE + H     Y  ++K   L  + +
Sbjct: 180 TLLFSATMSKEIEKIAKSYLHDYKEIVVGSRNEGAEKVNH---IYYMVHAKDKYLALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIFC  K     +   L + G++  A+HG++ Q+ R   +  F++  +Q +
Sbjct: 237 VDYYPSIFAIIFCRTKVETQEIADKLIRDGYNAEALHGDLSQQQRDLTMQKFRQHNVQFL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G + +++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHTRERYKVRE 356

Query: 360 IEKLIEKKV 368
           IEK+I+ ++
Sbjct: 357 IEKIIQPQI 365


>gi|282879073|ref|ZP_06287833.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
           35310]
 gi|281298807|gb|EFA91216.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
           35310]
          Length = 644

 Score =  156 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 140/405 (34%), Positives = 229/405 (56%), Gaps = 21/405 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F +LG+S ++  A+ + G+V P P+Q + IP +L    DV  +AQTGTGKTA++ LP+L
Sbjct: 20  TFEELGVSEEIRRAIEELGFVHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAYGLPLL 79

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             ++      +  + +IL PTREL  Q+AD+ + + K         + G      Q   L
Sbjct: 80  QKIDV---DSKHTQAIILSPTRELCLQIADDLKDFAKYIKNLHVEPVYGGASIVTQIHAL 136

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR++D  NRG   ++++  +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 137 KHGAQIIVATPGRLIDLMNRGVAKLDHVNNVVLDEADEMLNMGFSESINTILAGVPDDRN 196

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM++E++K+++ +L++ K I V + +  AE + H     Y   ++   L  + +
Sbjct: 197 TLLFSATMSNEIEKIAKTYLRDYKEIVVGSRNEGAENVNH---IYYMVNARDKYLALKRI 253

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIFC  K     +   L K G++  A+HG++ Q+ R   +  F++   QL+
Sbjct: 254 VDYYPRIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHVTQLL 313

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  ENY HR GRTGRAG+ G +  ++   +   + A
Sbjct: 314 VATDVAARGLDVDDLTHVINYGMPDDTENYTHRSGRTGRAGKKGTSICIIHTRERSKVRA 373

Query: 360 IEKLIEKKVDWLNGDLSSLNP-----------PLEKIDIAQHNHA 393
           +EK+I K  ++++G L +               +EKID+ +   A
Sbjct: 374 VEKIIGK--EFVDGTLPTAQEICAKQLYKAMHDIEKIDVDEEQIA 416


>gi|91792106|ref|YP_561757.1| ATP-dependent RNA helicase SrmB [Shewanella denitrificans OS217]
 gi|91714108|gb|ABE54034.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 411

 Score =  156 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 130/387 (33%), Positives = 210/387 (54%), Gaps = 7/387 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L   ++ ++   G+  PT IQ +TIPL +++ D+   A TGTGKTASF+LP L
Sbjct: 1   MLFEDFHLDHSLLDSLKAMGHNTPTTIQQQTIPLAMEQEDILAKAPTGTGKTASFLLPAL 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L     R      + +L PTRELA+Q+         +  L ++++ GG+P+  Q + L
Sbjct: 61  QHLIDFPRRFDGQARVLVLTPTRELASQIHRYACHLATDLGLDISIVTGGVPYGPQEEAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D++I TPGR++++ ++ K     +EI+VIDEADRMLDMGF   ++ I       +Q
Sbjct: 121 AGNVDIMIATPGRLMEYLDKNKFDATEVEIMVIDEADRMLDMGFSSVVKTIAIEAQGCKQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT+ +               + V+  +  +E  +       A        L   L
Sbjct: 181 KMLFSATL-EGGGVQRFARELLDDPVTVDVEAPRSEKAKIHQWIHLADDQTHKFALLCNL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+++K  I+F   ++ V +L   L K+G S   + G+++Q+ R + L  F +G + ++
Sbjct: 240 LRQESVKRTIVFVKTREVVASLEGLLLKEGISCAFMRGDMEQKKRFQALGRFTKGEVDIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI D+ HV N+D+P  A+ Y+HRIGRTGRAG  G A +LV   D++ +  
Sbjct: 300 LATDVAARGIDIDDITHVINYDMPRSADAYVHRIGRTGRAGAKGTAISLVEAHDMRIVSK 359

Query: 360 IEKLIEKK-----VDWLNGDLSSLNPP 381
           IE+ IE+      ++ L  +      P
Sbjct: 360 IERYIEQPLKRRVIEELRPNNKEAKVP 386


>gi|302660698|ref|XP_003022025.1| hypothetical protein TRV_03842 [Trichophyton verrucosum HKI 0517]
 gi|291185951|gb|EFE41407.1| hypothetical protein TRV_03842 [Trichophyton verrucosum HKI 0517]
          Length = 474

 Score =  156 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 133/430 (30%), Positives = 230/430 (53%), Gaps = 9/430 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 50  TFKDLGIIDSLCDACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQ 109

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    L+L PTRELA Q+ + FE  G   ++  A+++GG+   +Q+  L +
Sbjct: 110 AL---MEKPQPYFGLVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSISLGK 166

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +    N     + N++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 167 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRT 226

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT++ +++ +    L NP R+ +++  +  +T+     +      K   +    + 
Sbjct: 227 YLFSATLSSKVESLQRASLSNPLRVSISS--NKYQTVSTLLQSYIFIPHKYKDIYLVHIL 284

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   +  IIF         L   L   GF    +HG + Q +R+  L  F+ G+  ++V
Sbjct: 285 NEFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILV 344

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V NFD+P+ ++ YIHR+GRT RAG+ G+A ++V + +++    I
Sbjct: 345 ATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQRI 404

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD---RRKKNYSSQK 417
           E  + K++     +   +    +++  AQ     +   + +K        R ++   S++
Sbjct: 405 EAALGKQLPEHKTEKEEVMVLSDRVGDAQRLAVTEMKDLHEKRGSKGATLRGRRKGDSKR 464

Query: 418 SHIPLKESEK 427
               +   E+
Sbjct: 465 GRDDMDREER 474


>gi|326519741|dbj|BAK00243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 649

 Score =  156 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 129/379 (34%), Positives = 205/379 (54%), Gaps = 2/379 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F   G   +++  V  AG+  P+PIQ ++ P+ L+  D+  +A+TG+GKT  ++LP  
Sbjct: 161 MSFQSTGFPSEILREVQQAGFSAPSPIQAQSWPIALKGSDIVAVAKTGSGKTLGYLLPGF 220

Query: 61  TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +++         P  L+L PTRELA Q+ D   K+G++  ++   L GG P   Q + L
Sbjct: 221 ILVKNLRHNSRDGPTVLVLSPTRELATQIQDEAIKFGRSSRISSTCLYGGAPKGPQLRDL 280

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGAD+++ TPGR+ D    GK+ +  +  LV+DEADRMLDMGF P I+ I   V   RQ
Sbjct: 281 ERGADIVVATPGRLNDILEMGKVSLRQVAYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQ 340

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+F+AT   E++K++ + L NP ++ +                     S +       +
Sbjct: 341 TLMFTATWPREVRKIASDLLTNPVQVNIGNTDELVANKSI-TQYVEVTTSMEKGRRLDQI 399

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q    + +I     K + +       + +   AIHG+  Q  R  +LS F+ G   ++
Sbjct: 400 LRQQEPGSKVIIFCSTKRMCDQLSRNLSRQYGASAIHGDKSQAERDSVLSEFRTGRCPIL 459

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+  V N+D P   E+Y+HRIGRTGRAG  G A+T    +D K+   
Sbjct: 460 VATDVAARGLDVKDIRVVVNYDFPTGVEDYVHRIGRTGRAGASGIAYTFFCDQDSKYASD 519

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E     ++ +L ++
Sbjct: 520 LVKILEGANQAVSPELRAM 538


>gi|292493472|ref|YP_003528911.1| DEAD/DEAH box helicase [Nitrosococcus halophilus Nc4]
 gi|291582067|gb|ADE16524.1| DEAD/DEAH box helicase domain protein [Nitrosococcus halophilus
           Nc4]
          Length = 504

 Score =  156 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 134/373 (35%), Positives = 205/373 (54%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F    +S  ++ A+   GY  PT IQ + IP +L   D+ G AQTGTGKTA+F +P+L
Sbjct: 8   LSFDGFAISAPILQAIKQVGYETPTQIQARAIPHLLAGCDLMGQAQTGTGKTAAFAIPIL 67

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L   R     P+ L+L PTRELA QVA+ F+ Y +       L I  G     Q ++L
Sbjct: 68  NRLALTRKE---PQALVLVPTRELAIQVAEAFQTYARYLEDFRVLPIYGGQSMGNQLRQL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  V++ TPGRI+DH  R  LL++ +  +V+DEAD ML MGFI  ++ I   +P  RQ
Sbjct: 125 KRGVHVIVGTPGRIMDHLRRKSLLLDKLTTVVLDEADEMLKMGFIEDVEWILGQMPAKRQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM   ++ ++   L +P  I++   +++   I   +      +          +
Sbjct: 185 TALFSATMPSSVRHIASRHLHSPHDIKIKGKTASLPAINQRYCLVSDFHK---LDALTRM 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K     L   L  +G++  A++G++ Q  R K++   K+ T+ ++
Sbjct: 242 LEVEEYDATIIFVRTKIATEELAKKLSARGYAAAALNGDMAQAQREKVVGQLKKNTLDII 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV N+D+P     YIHRIGRTGRAGR G A   VA  + + + A
Sbjct: 302 VATDVAARGLDVKRISHVVNYDIPYDTGTYIHRIGRTGRAGRTGTATLFVAPRERRMLSA 361

Query: 360 IEKLIEKKVDWLN 372
           I+K+  + +  + 
Sbjct: 362 IKKVTGQPLYEMP 374


>gi|226953843|ref|ZP_03824307.1| ATP-dependent RNA helicase [Acinetobacter sp. ATCC 27244]
 gi|226835434|gb|EEH67817.1| ATP-dependent RNA helicase [Acinetobacter sp. ATCC 27244]
          Length = 647

 Score =  156 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 132/392 (33%), Positives = 215/392 (54%), Gaps = 11/392 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            FA+  L   +  A+   G+  PTP+Q + IP  L+  D+   +QTG+GKTA+F+LP   
Sbjct: 4   TFAEFSLHETLQQALEGLGFTTPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLN 63

Query: 59  ------MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                      ++    V  P  L++ PTRELA QV+ +   + ++        I G   
Sbjct: 64  ALAGQETFVPFKERMKAVTQPTILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             +  +  +GA V++ TPGR+LD  NR +L ++ +E L++DEADRMLD+GF   ++ I  
Sbjct: 124 FGKQIQQLKGAQVVVATPGRLLDLVNRRQLKLDKVESLIVDEADRMLDLGFAEDLEAIGE 183

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L     QTL+FSAT  D + +++E  + +P+RI + T  ST   +      T     K  
Sbjct: 184 LAANRNQTLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTDVTQTLHWTDGFEHK-- 241

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L     S +++   ++F + +++   L   L + G SV A+HG + Q  R + L + +
Sbjct: 242 KKLLTHWLSDESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIR 301

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL    
Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGQAVTLATYR 361

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
           +   I A+E  ++ +++    +    +PP  +
Sbjct: 362 ERGKIRALEDYLDARLNVSEIEGLEPSPPPAR 393


>gi|182419575|ref|ZP_02950823.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
 gi|237668830|ref|ZP_04528814.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182376610|gb|EDT74185.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
 gi|237657178|gb|EEP54734.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 480

 Score =  156 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 126/364 (34%), Positives = 210/364 (57%), Gaps = 6/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+   +S +++ AV   GY KP+ +Q K IP ++   DV   +QTG+GKTA+F +P+  
Sbjct: 4   EFSKFNISEEILKAVDGLGYKKPSEVQEKVIPEIILNKDVIVKSQTGSGKTAAFAIPICE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++        P+ L+L PTRELA QV+++F   G+   +    + G  P   Q + L++
Sbjct: 64  KVDWNE---NAPQVLVLSPTRELAVQVSEDFVNIGRFKRIKSVAVFGKQPISEQARALKQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+  TPGR+LDH +RG L +  I+  VIDEAD ML+MGFI  ++ +   +P  + T 
Sbjct: 121 KTHVVCGTPGRVLDHIDRGSLDVKKIKYFVIDEADEMLNMGFIGQVEGVIRRLPKKKVTT 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT++DE++ + E ++  P  I +       + IEH           K          
Sbjct: 181 LFSATISDEIRTLCEKYMDRPVDISIEKQKVVNDNIEHGLYYVDYNERFKLLNELL---I 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  +IF   K+NV  + + L+ +G+S   IHG + Q+ R+  + +F++G  +++ A
Sbjct: 238 CEKPETAVIFGRTKENVDEIYNFLKSKGYSCGRIHGGMLQKERLSAMDSFRKGEFRILSA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI ++ HV NF++P   E Y+HRIGR+GRAG+ GKA ++ +K   +++  IE
Sbjct: 298 TDVAARGIDIENITHVINFELPVEKEAYVHRIGRSGRAGKSGKAISICSKHGDRYLKNIE 357

Query: 362 KLIE 365
           + I 
Sbjct: 358 EYIG 361


>gi|163735815|ref|ZP_02143244.1| putative ATP-dependent RNA helicase, putative [Roseobacter
           litoralis Och 149]
 gi|161390901|gb|EDQ15241.1| putative ATP-dependent RNA helicase, putative [Roseobacter
           litoralis Och 149]
          Length = 433

 Score =  156 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 151/422 (35%), Positives = 239/422 (56%), Gaps = 7/422 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  + L P++V  +   G   PTPIQ + IP  +   DV G+AQTGTGKTA+F +P++ 
Sbjct: 3   DFEMMNLPPELVARLGRMGLNDPTPIQKQAIPHAMNGRDVMGLAQTGTGKTAAFGVPLVA 62

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +    GR   +  R L+L PTRELA Q++ N   + +N  + VA+++GG     Q K+L
Sbjct: 63  QMLELDGRPAPKSVRGLVLAPTRELATQISVNLRSFAENTKVKVAMVVGGQSINNQIKRL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+L+ TPGR+LD  +R  + ++    LV+DEAD+MLDMGFI  ++ I S++P  RQ
Sbjct: 123 ERGVDLLVATPGRLLDLMDRRAVRLDETVFLVLDEADQMLDMGFIHDLRKIASVIPKERQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  ++ +++ ++L++P R+EV+ P   A+ +                     +
Sbjct: 183 TMLFSATMPKQMNELANSYLRSPIRVEVSPPGKAADKVTQEVHFIAKSEKSAL---LIEM 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K     L  SL K G++  +IHGN  Q  R + ++ FK G I+++
Sbjct: 240 LDKHREERALVFGRTKHGSEKLMKSLVKAGYAAGSIHGNKSQGQRDRAIAAFKSGEIKVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIPDV HV+N+D+PN  ENY+HRIGRT RAG+ G A    A +++  + A
Sbjct: 300 VATDVAARGLDIPDVKHVYNYDLPNVPENYVHRIGRTARAGKDGAAIAFCAPDEMGELKA 359

Query: 360 IEKLIEKKVDWLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           I+K +   +   +G    ++  PP +K          +     + + G     +     +
Sbjct: 360 IQKTMSISIPVGSGRPWEAADIPPGDKTKGRGRGRGGRPPQGGKPAGGRPGGARKRPGAR 419

Query: 418 SH 419
           + 
Sbjct: 420 NR 421


>gi|327282752|ref|XP_003226106.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Anolis
           carolinensis]
          Length = 697

 Score =  156 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 135/399 (33%), Positives = 217/399 (54%), Gaps = 5/399 (1%)

Query: 11  KVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI---LEKGR 67
            ++  +   G++KPTPIQ +  P++LQ +D+ GIAQTGTGKT ++++P           R
Sbjct: 301 DIMANIRKNGFLKPTPIQAQAWPIILQGYDLIGIAQTGTGKTLAYLMPGFIHLDLQPIPR 360

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
            +   P  L+L PTRELA QV     KY      ++ +  GG     Q   + +G D++I
Sbjct: 361 EKRGGPGMLVLIPTRELALQVEAECSKYSYKGIKSICIY-GGGDRRGQINVVSKGVDIVI 419

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+ D      + + +I  LV+DEADRMLDMGF P I  I   +   RQT++ SAT 
Sbjct: 420 ATPGRLNDLQMNNFINLRSITYLVLDEADRMLDMGFEPQIMKILLDIRPDRQTVMTSATW 479

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
            D ++++++++L++P  + V T    A       V    +  K+    +  + S  +   
Sbjct: 480 PDGVRRLAKSYLKDPMIVYVGTLDLAAVNTVEQRVVVIPEEEKRAFT-RFFIDSMKSEDK 538

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            IIF  +K    +L      QG  V ++H N +Q  R + L +F++G ++++VA+DLA+R
Sbjct: 539 VIIFVGKKLTADDLSSDFSLQGIPVQSLHSNREQCDREQALEDFRQGRVRVLVATDLASR 598

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           GLD+ D+ HVFNFD P   E Y+HR+GRTGRAGR G+A TLV + D +    + +++E+ 
Sbjct: 599 GLDVQDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGEAVTLVTRNDWRVASELIEILERG 658

Query: 368 VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
              +  +L S+    ++  + +        P  +   GF
Sbjct: 659 NQVVPEELISMAERYKQFQLKKEMERDLVKPRGRSRKGF 697


>gi|294651664|ref|ZP_06728967.1| ATP-dependent RNA helicase [Acinetobacter haemolyticus ATCC 19194]
 gi|292822443|gb|EFF81343.1| ATP-dependent RNA helicase [Acinetobacter haemolyticus ATCC 19194]
          Length = 647

 Score =  156 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 132/389 (33%), Positives = 214/389 (55%), Gaps = 11/389 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            FA+  L   +  A+   G+  PTP+Q + IP  L+  D+   +QTG+GKTA+F+LP   
Sbjct: 4   TFAEFSLHETLQQALEGLGFTTPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLN 63

Query: 59  ------MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                      ++    V  P  L++ PTRELA QV+ +   + ++        I G   
Sbjct: 64  ALAGQETFVPFKERMKAVTQPTILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             +  +  +GA V++ TPGR+LD  NR +L ++ +E L++DEADRMLD+GF   ++ I  
Sbjct: 124 FGKQIQQLKGAQVVVATPGRLLDLVNRRQLKLDKVESLIVDEADRMLDLGFAEDLEAIGE 183

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L     QTL+FSAT  D + +++E  + +P+RI + T  ST   +      T     K  
Sbjct: 184 LAANRNQTLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTDVTQTLHWTDGFEHK-- 241

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L     S +++   ++F + +++   L   L + G SV A+HG + Q  R + L + +
Sbjct: 242 KKLLTHWLSDESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIR 301

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG  +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL    
Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGQAVTLATYR 361

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           +   I A+E  ++ +++    +    +PP
Sbjct: 362 ERGKIRALEDYLDARLNVSEIEGLEPSPP 390


>gi|160380611|sp|A6ZRX0|DBP2_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP2; AltName: Full=DEAD
           box protein 2; AltName: Full=p68-like protein
 gi|151944424|gb|EDN62702.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
 gi|190409099|gb|EDV12364.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
 gi|259149249|emb|CAY82491.1| Dbp2p [Saccharomyces cerevisiae EC1118]
          Length = 546

 Score =  156 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 209/377 (55%), Gaps = 3/377 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ KPT IQ +  P+ L   D+ GIA TG+GKT S+ LP + 
Sbjct: 114 TFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIV 173

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+G +  +    + GG+P   Q + L
Sbjct: 174 HINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDL 233

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG++++I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 234 SRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 293

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ-L 238
           TL++SAT   E+++++ ++L +P +++V +   +A       V   + + K+  L +   
Sbjct: 294 TLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLE 353

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             SQD     +IF + K+   ++   L + G+   AIHG+ DQR R  +L  F+ G   +
Sbjct: 354 TASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPI 413

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARG+D+  + +V N+D+P   E+Y+HRIGRTGRAG  G A +   +++     
Sbjct: 414 MVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGA 473

Query: 359 AIEKLIEKKVDWLNGDL 375
            +  ++ +    +  +L
Sbjct: 474 KLISIMREANQNIPPEL 490


>gi|77166069|ref|YP_344594.1| DEAD/DEAH box helicase-like [Nitrosococcus oceani ATCC 19707]
 gi|76884383|gb|ABA59064.1| ATP-dependent RNA helicase CsdA [Nitrosococcus oceani ATCC 19707]
          Length = 500

 Score =  156 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 139/373 (37%), Positives = 207/373 (55%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F    +S  V+ A+   GY  PT IQ + IP +L  HD+ G AQTGTGKTA+F +P L
Sbjct: 8   LSFDSFAISAPVLQAIKQVGYETPTLIQARAIPHLLAGHDLVGQAQTGTGKTAAFAIPTL 67

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             LE  +     P+ L+L PTRELA QVA+ F+ Y +       L I  G     Q ++L
Sbjct: 68  ERLELSQKE---PQVLVLVPTRELAIQVAEAFQSYARYLEDFHVLPIYGGQSMGNQLRQL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA V++ TPGRI+DH  R  L++  +  +++DEAD ML MGFI  ++ I   VP  RQ
Sbjct: 125 KRGAHVIVGTPGRIMDHLRRKSLILTKLTTVILDEADEMLKMGFIEDVEWILKQVPTKRQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   ++ ++   LQ P+ I++   +++   I   +      +          +
Sbjct: 185 VALFSATMPTSVRNIASRHLQAPQDIKIKGETASLPAINQRYWLVSGLHK---LDALTRM 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K     L   L  +G++  A++G+I Q SR K++   K+ TI ++
Sbjct: 242 LEAEEYDATIIFVRTKIATEELAKKLMARGYAAAALNGDIPQSSREKVVDQLKKNTIDII 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +GHV N+D+P     YIHRIGRTGRAGR G A   VA  + + + A
Sbjct: 302 VATDVAARGLDVKRIGHVVNYDIPYDTGTYIHRIGRTGRAGRTGTATLFVAPRERRMLSA 361

Query: 360 IEKLIEKKVDWLN 372
           I++   + +  + 
Sbjct: 362 IKRATGQPLYEMQ 374


>gi|333030556|ref|ZP_08458617.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
 gi|332741153|gb|EGJ71635.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
          Length = 378

 Score =  156 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 144/380 (37%), Positives = 215/380 (56%), Gaps = 11/380 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   ++ A+ + GY  PTPIQ + I   +   D+ G+AQTGTGKTA+F +P++
Sbjct: 1   MTFKELNIIEPILQALTEKGYSTPTPIQEQAILPAIDHQDILGLAQTGTGKTAAFSIPII 60

Query: 61  TILEKGRAR--------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
             L     +         R  R LIL PTRELA Q+ ++ + Y +  +L   ++ GG+  
Sbjct: 61  QHLHLDSLQKEGEEKIAKRAIRALILTPTRELAIQIGESLKDYTRYTDLQYTVIFGGVKQ 120

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
            +Q  +L+ G D+L+ TPGR+LD  ++G + +N ++  V+DEADRMLDMGFI  I+ +  
Sbjct: 121 GSQVNRLKAGVDILVATPGRLLDLMHQGHIKINKVQHFVLDEADRMLDMGFIHDIKRLLP 180

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +P  RQTL FSATM   +  +S + L+NP RIEV   SS  +TIE           K  
Sbjct: 181 RLPKNRQTLFFSATMPRSIASLSRSILKNPIRIEVTPASSVVDTIEQEVYFVEQNDKKDL 240

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            +           K+ ++F   K     +  ++ K G +   IHGN  Q +R + L NFK
Sbjct: 241 LVKLLHEGDM---KSVLVFSRTKHGANKIVKAITKAGITSEPIHGNKSQNARQRALENFK 297

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
               +++VA+D+AARG+DI ++  V N+D+PN  E Y+HRIGRTGRAG  GKA T  A  
Sbjct: 298 AHKTRVLVATDIAARGIDIENLELVVNYDLPNIPETYVHRIGRTGRAGNVGKALTFCAAS 357

Query: 353 DIKHIDAIEKLIEKKVDWLN 372
           +   +  IEKL + K+  + 
Sbjct: 358 ERIFLKDIEKLTKNKLSIVK 377


>gi|225437591|ref|XP_002277419.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743992|emb|CBI36962.3| unnamed protein product [Vitis vinifera]
          Length = 771

 Score =  156 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 140/380 (36%), Positives = 212/380 (55%), Gaps = 4/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D G SP+++ A+   GY KPTPIQ +  P+VL   D+ GIA+TG+GKTA+FVLPM+ 
Sbjct: 227 TFEDCGFSPQLMNAITKQGYEKPTPIQCQAFPIVLSGRDIIGIAKTGSGKTAAFVLPMIV 286

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       +   P  +I  PTRELA Q+    +K+ K Y + V+ + GG+    Q K+L
Sbjct: 287 HIMDQPELAKEEGPIGVICAPTRELAHQIYLESKKFAKPYGIRVSAIYGGMSKLEQFKEL 346

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G +++I TPGR++D      L M     LV+DEADRM D+GF P I++I   +   RQ
Sbjct: 347 KSGCEIVIATPGRLIDMIKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 406

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  +++K++   L +P R+ V       E I        +   K    L   L
Sbjct: 407 TLLFSATMPRKVEKLAREILTDPVRVTVGEVGMANEDITQVVQVIPSDAEK-LPWLLDKL 465

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + ++F ++K  V  +   L ++G  + A+HG+ DQ SRM IL  FK G   ++
Sbjct: 466 PGMIDDGDVLVFASKKATVDEIESQLGQKGLKIAALHGDKDQASRMDILQKFKSGIYHVL 525

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIKHID 358
           +A+D+AARGLDI  +  V NFD+    + ++HRIGRTGRAG + G A+TL+  ++ +   
Sbjct: 526 IATDVAARGLDIKSIKSVVNFDIARDMDAHVHRIGRTGRAGDKDGTAYTLITHKEARFAG 585

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +   +      +  +L  L
Sbjct: 586 ELVGSLIAAGQNVPMELMDL 605


>gi|147821303|emb|CAN74586.1| hypothetical protein VITISV_041989 [Vitis vinifera]
          Length = 771

 Score =  156 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 140/380 (36%), Positives = 212/380 (55%), Gaps = 4/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D G SP+++ A+   GY KPTPIQ +  P+VL   D+ GIA+TG+GKTA+FVLPM+ 
Sbjct: 227 TFEDCGFSPQLMNAITKQGYEKPTPIQCQAFPIVLSGRDIIGIAKTGSGKTAAFVLPMIV 286

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       +   P  +I  PTRELA Q+    +K+ K Y + V+ + GG+    Q K+L
Sbjct: 287 HIMDQPELAKEEGPIGVICAPTRELAHQIYLESKKFAKPYGIRVSAIYGGMSKLEQFKEL 346

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G +++I TPGR++D      L M     LV+DEADRM D+GF P I++I   +   RQ
Sbjct: 347 KSGCEIVIATPGRLIDMIKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 406

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  +++K++   L +P R+ V       E I        +   K    L   L
Sbjct: 407 TLLFSATMPRKVEKLAREILTDPVRVTVGEVGMANEDITQVVQVIPSDAEK-LPWLLDKL 465

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + ++F ++K  V  +   L ++G  + A+HG+ DQ SRM IL  FK G   ++
Sbjct: 466 PGMIDDGDVLVFASKKATVDEIESQLGQKGLKIAALHGDKDQASRMDILQKFKSGIYHVL 525

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIKHID 358
           +A+D+AARGLDI  +  V NFD+    + ++HRIGRTGRAG + G A+TL+  ++ +   
Sbjct: 526 IATDVAARGLDIKSIKSVVNFDIARDMDAHVHRIGRTGRAGDKDGTAYTLITHKEARFAG 585

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +   +      +  +L  L
Sbjct: 586 ELVGSLIAAGQNVPMELMDL 605


>gi|307721464|ref|YP_003892604.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979557|gb|ADN09592.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 423

 Score =  156 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 148/409 (36%), Positives = 234/409 (57%), Gaps = 6/409 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LG+   ++ A+ D GY +PT +Q + IPLVL + DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFEKLGIFKPLLDAINDLGYKEPTLVQTRAIPLVLGKKDVFATAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + +     +  R +IL PTREL+ Q+ ++   Y K  ++   +L+GG   + Q + L+
Sbjct: 61  QKM-RKHVESKGVRAIILSPTRELSIQIYEDITAYSKYMDIKTTILVGGKDLQKQREALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G +++I TPGR+L+H   G  L +     V+DEADRMLDMGF   I+ I  L+P   QT
Sbjct: 120 KGTEIVIATPGRLLEHIENGLSLKDVEVF-VLDEADRMLDMGFTKDIRKIHPLLPKRHQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT +D+++K+S+  L  P  IE    ++T +TI             +       L 
Sbjct: 179 LLFSATFSDKVRKLSKLILTKPAFIETAKKNTTVDTINQVAYLVDTVRKAEL---LAYLI 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F   K +   L   L+K G     IHG+  + +R+K L+ FKEG I+++V
Sbjct: 236 GSRNFPQVLVFTRTKVSADALSEELKKDGLKCGVIHGDRTKANRLKTLNQFKEGKIRVLV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI ++ +V N+++P+  E+Y+HR+GRTGRAGR G+A +L+   +   I  I
Sbjct: 296 ATDIASRGLDIEELPYVINYELPSIPEDYVHRVGRTGRAGREGEAISLIDIYEKYDIKDI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ-HNHARKNNPIPQKSTGFDR 408
           EKLI +K+     +    +P + + D+ +    A    P  +K   +++
Sbjct: 356 EKLIGQKIPQETVEGFEPDPNIRRKDVDEVKLKAEHKKPDNKKVRQYNK 404


>gi|205277319|ref|NP_001034520.2| vasa RNA helicase [Tribolium castaneum]
 gi|270011102|gb|EFA07550.1| vasa [Tribolium castaneum]
          Length = 627

 Score =  156 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 122/384 (31%), Positives = 188/384 (48%), Gaps = 8/384 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL P ++  V  +GY KPT IQ   IP++L   D+   AQTG+GKTA+F+LP++ 
Sbjct: 207 SFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPIIH 266

Query: 62  ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                            P  +I+ PTRELA Q+AD  +K+  N  + VA++ GG     Q
Sbjct: 267 NLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTNHQ 326

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             ++  G  +L+ TPGR+ D  NRG +  N+++  V+DEADRMLDMGF+  ++ + S   
Sbjct: 327 RGRILGGCHILVATPGRLKDFVNRGNVSFNSLKYFVLDEADRMLDMGFLGDVEEMLSHQS 386

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                   +   +    +  +          +        +        + Q SK     
Sbjct: 387 MPATGERQTLMFSATFPEEVQQLAGKFLLNYIFIAVGIVGSACTDVEQKFFQVSKFDKRS 446

Query: 236 QQLLQSQDTMK-NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + +   +       +IF   K+N   L   L +Q     +IHG+  Q  R K L +FK G
Sbjct: 447 KLVSILEKAPNERTLIFVETKRNADFLATFLSEQNIQSTSIHGDRYQSEREKALLDFKTG 506

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-D 353
             +++VA+ +AARGLDI DV HV N+D+P   + Y+HRIGRTGR G  GKA +   ++ D
Sbjct: 507 HRKVLVATGVAARGLDIKDVQHVINYDLPKSIDEYVHRIGRTGRVGNKGKATSFFDEDQD 566

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSS 377
                 + K++ +    +   L S
Sbjct: 567 RNLASDLAKILSQAKQEIPEWLGS 590


>gi|58429986|gb|AAW78361.1| vasa RNA helicase [Tribolium castaneum]
          Length = 580

 Score =  156 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 122/384 (31%), Positives = 188/384 (48%), Gaps = 8/384 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL P ++  V  +GY KPT IQ   IP++L   D+   AQTG+GKTA+F+LP++ 
Sbjct: 159 SFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPIIH 218

Query: 62  ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                            P  +I+ PTRELA Q+AD  +K+  N  + VA++ GG     Q
Sbjct: 219 NLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTNHQ 278

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             ++  G  +L+ TPGR+ D  NRG +  N+++  V+DEADRMLDMGF+  ++ + S   
Sbjct: 279 RGRILGGCHILVATPGRLKDFVNRGNVSFNSLKYFVLDEADRMLDMGFLGDVEEMLSHQS 338

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                   +   +    +  +          +        +        + Q SK     
Sbjct: 339 MPATGERQTLMFSATFPEEVQQLAGKFLLNYIFIAVGIVGSACTDVEQKFFQVSKFDKRS 398

Query: 236 QQLLQSQDTMK-NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + +   +       +IF   K+N   L   L +Q     +IHG+  Q  R K L +FK G
Sbjct: 399 KLVSILEKAPNERTLIFVETKRNADFLATFLSEQNIQSTSIHGDRYQSEREKALLDFKTG 458

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-D 353
             +++VA+ +AARGLDI DV HV N+D+P   + Y+HRIGRTGR G  GKA +   ++ D
Sbjct: 459 HRKVLVATGVAARGLDIKDVQHVINYDLPKSIDEYVHRIGRTGRVGNKGKATSFFDEDQD 518

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSS 377
                 + K++ +    +   L S
Sbjct: 519 RNLASDLAKILSQAKQEIPEWLGS 542


>gi|168025828|ref|XP_001765435.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683285|gb|EDQ69696.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 535

 Score =  156 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 131/421 (31%), Positives = 202/421 (47%), Gaps = 26/421 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++A+  LSP+++ AV   GY KP+PIQ+  IP+ LQ+ DV GIA+TG+GKTA+FVLPMLT
Sbjct: 115 NWAEGALSPELLKAVQKVGYTKPSPIQMAAIPIGLQQRDVIGIAETGSGKTAAFVLPMLT 174

Query: 62  I-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                           P  +++ PTRELA Q+ D   K+    ++ V  ++GG   E Q 
Sbjct: 175 YISKLPPMTEEIEAEGPYAVVMAPTRELAQQIEDETVKFAHFLDIRVVSIVGGQSIEEQG 234

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            KL +G +V+I TPGR+LD   R   ++N    +V+DEADRM+DMGF P +  +   +P 
Sbjct: 235 FKLRQGCEVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPS 294

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--------------CFV 222
           +           D  +     ++ +          +                        
Sbjct: 295 SNLKPENEDAELDTHKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQ 354

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                   +       + +    K  IIF N KK+   L   L+K G+ V  +HG   Q 
Sbjct: 355 HVIMVKETEKLDRLCRVLNDMGDKTAIIFVNTKKSADTLSRQLDKNGYRVTTLHGGKTQE 414

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R   L  F+      +VA+D+A RG+DIPDV HV N+D+P   E Y HRIGRTGRAG+ 
Sbjct: 415 QREVSLDGFRNKRFNCLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKT 474

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           G A T +   D      +++++ +         S + P L + + ++       +  P++
Sbjct: 475 GIATTFLTLHDTDVFYDLKQMLVQS-------NSPVPPELARHEASKFKPGSIPDRPPRR 527

Query: 403 S 403
           +
Sbjct: 528 N 528


>gi|301785417|ref|XP_002928121.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 1
           [Ailuropoda melanoleuca]
          Length = 729

 Score =  156 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 131/426 (30%), Positives = 215/426 (50%), Gaps = 19/426 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 290 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 349

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             + +          ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 350 AHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGH 409

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  ++ LV+DEADRMLDMGF P ++      
Sbjct: 410 SIRQIVQGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCP 469

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       +    QYSK
Sbjct: 470 GMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSK 529

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 530 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 587

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 588 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 647

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L+     +   LE+I  + +      +         D R 
Sbjct: 648 PESDNH------LAQPLVKVLSDAQQDVPAWLEEIAFSTYVPGFSGSARGNVFASVDTR- 700

Query: 411 KNYSSQ 416
           KNY  +
Sbjct: 701 KNYQGK 706


>gi|300727507|ref|ZP_07060898.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           bryantii B14]
 gi|299775210|gb|EFI71811.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           bryantii B14]
          Length = 622

 Score =  156 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 135/385 (35%), Positives = 220/385 (57%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F +LG+S  +  A+ + G+  P P+Q + IP +L R  DV  +AQTGTGKTA++ LP+L
Sbjct: 3   TFEELGVSKDICRAISELGFEHPMPVQEEVIPYLLSRESDVIALAQTGTGKTAAYGLPVL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
              +      ++ +T+IL PTREL  Q+AD+  ++ K  +    + + G     +Q + L
Sbjct: 63  QNTDPS---TKITQTVILSPTRELCLQIADDLNEFAKYIDGMHIVAVYGGTDIGSQIRTL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  +++ TPGR++D  NRG   + N++ +V+DEAD ML+MGF   I  I   +     
Sbjct: 120 KHGVQIIVATPGRLVDLMNRGVAKLENVQNIVLDEADEMLNMGFSESINTIFEGLSKDHI 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E++++++N+L N K I V + +  AE + H     Y   +K   L  + +
Sbjct: 180 TLLFSATMSKEVERIAKNYLHNHKEIVVGSRNEGAEHVNH---IYYMVSAKDKYLALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  K     +   L K G++  A+HG++ Q+ R   +  F+    Q +
Sbjct: 237 VDFHPRIFGIIFCRTKVETQEVADKLIKDGYNAEALHGDLSQQQRDLTMQKFRNHLTQFL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ ++ HV N+ +P+  E+Y HR GRTGRAGR G + +++  ++   +  
Sbjct: 297 VATDVAARGLDVDELTHVINYGLPDDIESYTHRSGRTGRAGRKGTSISIIHVKEKWKVRQ 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IEK I K  +++ G+L       +K
Sbjct: 357 IEKQIGK--EFIAGELPKAEEICKK 379


>gi|328767833|gb|EGF77881.1| hypothetical protein BATDEDRAFT_20569 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 422

 Score =  156 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 184/376 (48%), Gaps = 9/376 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + +AG+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+FV+P+L 
Sbjct: 48  EFEDYFLKRELLMGIFEAGFERPSPIQEESIPIALAGRDILARAKNGTGKTAAFVIPVLE 107

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +     +    + L+L PTRELA Q +   +  GK+ N+ V +  GG   +    +L +
Sbjct: 108 KINI---QKSHIQALLLVPTRELALQTSQVCKLLGKHMNVQVMVSTGGTTLKDDILRLGQ 164

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD   RG   ++  +  V+DEAD++L   F P I+ + +    +RQ  
Sbjct: 165 TVHILVATPGRVLDLAGRGIANLSQCQTFVMDEADKLLSPEFAPIIEQLIAFCHKSRQIF 224

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++   + FLQ P  I          T+            ++       L S
Sbjct: 225 LFSATFPMMVKTFKDKFLQKPYEI----NLMDELTLHGVTQYYAYVEERQKVHCLNTLFS 280

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 281 KLQINQSIIFCNSTSRVELLARKITELGYSCFYIHARMMQSHRNRVFHDFRSGKTRHLVY 340

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
                  +   +   V NFD P  AE Y+HRIGR+GR G  G A  L+  +D   +  IE
Sbjct: 341 LLTRGIDIQAVN--VVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYDDRFSLYKIE 398

Query: 362 KLIEKKVDWLNGDLSS 377
           + +  ++  +   +  
Sbjct: 399 QELGTEITPIPPVIDK 414


>gi|288801723|ref|ZP_06407165.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           melaninogenica D18]
 gi|288335765|gb|EFC74198.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           melaninogenica D18]
          Length = 640

 Score =  156 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 136/385 (35%), Positives = 222/385 (57%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F +LG+S ++  A+ + G+  P P+Q + IP +L    DV  +AQTGTGKTA+F LP+L
Sbjct: 3   TFEELGVSEEIRRAISELGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKL 119
             ++      +     +L PTREL  Q+AD+ +++ K      +A + GG   + Q ++L
Sbjct: 63  QRIDTSSKETQAI---VLSPTRELCLQIADDLKEFSKYIPHLHIAAVYGGASIDTQIRQL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  +++ TPGR++D  +RGK  ++ +  +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 RHGVQIIVATPGRLIDLMHRGKARLDKVRNVVLDEADEMLNMGFQESITEILTGVPEDRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+++V++ +L + K I V + +  AE++ H     Y   ++   L  + L
Sbjct: 180 TLLFSATMSREVERVAKGYLHDYKEIVVGSRNEGAESVNH---IYYMVNARDKYLALKRL 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    I+FC  K     +   L K G++  A+HG++ Q+ R   +  F+    Q++
Sbjct: 237 VDFYPKIYAIVFCRTKVETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHLTQIL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  ENY HR GRTGRAG+ G + +++   +   +  
Sbjct: 297 VATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKYKVRN 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE+ I K  D+++G L S     +K
Sbjct: 357 IEREISK--DFVDGTLPSPEEICKK 379


>gi|302344868|ref|YP_003813221.1| putative ATP-dependent RNA helicase DeaD [Prevotella melaninogenica
           ATCC 25845]
 gi|302149937|gb|ADK96199.1| putative ATP-dependent RNA helicase DeaD [Prevotella melaninogenica
           ATCC 25845]
          Length = 640

 Score =  156 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 136/385 (35%), Positives = 222/385 (57%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F +LG+S ++  A+ + G+  P P+Q + IP +L    DV  +AQTGTGKTA+F LP+L
Sbjct: 3   TFEELGVSEEIRRAISELGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKL 119
             ++      +     +L PTREL  Q+AD+ +++ K      +A + GG   + Q ++L
Sbjct: 63  QRIDTSSKETQAI---VLSPTRELCLQIADDLKEFSKYIPHLHIAAVYGGASIDTQIRQL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  +++ TPGR++D  +RGK  ++ +  +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 RHGVQIIVATPGRLIDLMHRGKARLDKVRNVVLDEADEMLNMGFQESITEILTGVPEDRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E+++V++ +L + K I V + +  AE++ H     Y   ++   L  + L
Sbjct: 180 TLLFSATMSREVERVAKGYLHDYKEIVVGSRNEGAESVNH---IYYMVNARDKYLALKRL 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    I+FC  K     +   L K G++  A+HG++ Q+ R   +  F+    Q++
Sbjct: 237 VDFYPKIYAIVFCRTKVETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHLTQIL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  ENY HR GRTGRAG+ G + +++   +   +  
Sbjct: 297 VATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKYKVRN 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE+ I K  D+++G L S     +K
Sbjct: 357 IEREISK--DFVDGTLPSPEEICKK 379


>gi|297582584|ref|YP_003698364.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           selenitireducens MLS10]
 gi|297141041|gb|ADH97798.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
           MLS10]
          Length = 483

 Score =  156 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 142/406 (34%), Positives = 224/406 (55%), Gaps = 12/406 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GLS ++V A+ +     PT +Q + IPL ++  DV   +QTGTGKTAS+ +P+  
Sbjct: 5   SFQAFGLSDEIVRALNELNMTMPTDVQKQVIPLAMENKDVLVTSQTGTGKTASYAIPICD 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    R   P+ LIL PTRELA Q+ ++    G+   +    L G  P   Q  +L++
Sbjct: 65  TVDWEENR---PQALILSPTRELAVQIQEDITNIGRFRRIKATALYGQEPVNKQKLELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+LDH  +G L++N IE LVIDEAD+MLDMGFI  ++ I + +P  R T 
Sbjct: 122 KTHVVVGTPGRVLDHIKKGTLMLNRIEHLVIDEADQMLDMGFIDQVEAILASLPKERTTS 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +E++ ++   +  P +I +   +  A+TI     +     +K+   L Q +  
Sbjct: 182 LFSATMRNEIRALAGRHMNAPDQIAIKQETVAADTI---DQSVIHVTNKEKLQLLQDVTV 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + +IFCN +++V  L  SL K+G+    IHG + Q+ R  ++  FK G+ + ++A
Sbjct: 239 VENPDSCLIFCNTQESVDLLETSLNKEGYRARKIHGGLPQKERFSVMEAFKRGSFRYLIA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +++AARG+DI  V  V N+DVP   E+Y+HR GRTGRAG+ GKA T V   +   I  +E
Sbjct: 299 TNVAARGIDIDSVSLVINYDVPFEKESYVHRTGRTGRAGKAGKAITFVNNREKSAIRELE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           +     +           P  +++  A++    K N  P +     
Sbjct: 359 RYTGIIIPLAKA------PSPDEVKRARNTFYEKLNTAPVRKEKKS 398


>gi|126667283|ref|ZP_01738256.1| ATP-dependent RNA helicase [Marinobacter sp. ELB17]
 gi|126628228|gb|EAZ98852.1| ATP-dependent RNA helicase [Marinobacter sp. ELB17]
          Length = 463

 Score =  156 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 135/424 (31%), Positives = 213/424 (50%), Gaps = 8/424 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L  ++  A+   G+   TPIQ +T+P  L   D+ G AQTGTGKTA+F++  +
Sbjct: 42  LRFSDLNLDHRLQQAIAAIGFEYCTPIQAETLPWTLACQDLIGQAQTGTGKTAAFLITAI 101

Query: 61  TILEKGRAR-----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             + +            PR L L PTRELA Q+A + E+   +    V  ++GG+ ++ Q
Sbjct: 102 QTMLETPIEDSKRFASEPRVLALAPTRELAMQIAKDAEQLCAHTGHKVVTVVGGMHYDKQ 161

Query: 116 NKK-LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +      D+L+ TPGR++D      + ++ I+IL++DEADRMLDMGFIP ++ I    
Sbjct: 162 RDQLQNEVVDILVATPGRLIDFLGSQDVFLDQIDILILDEADRMLDMGFIPDVKRIIRKC 221

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
                      + T   Q V        +  E        +T E      Y     +   
Sbjct: 222 TPKEDRQTLLFSAT-FNQDVLNLASMWTQSAEFVEIEPEQKTAERVEQTVYLVGDDEKLR 280

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +      +  +   ++F N++    +L   L  QG SV  + G I Q  R+K L  FK G
Sbjct: 281 VLVNYLKRPEVDKALVFANRRDQCRDLEEDLRNQGVSVSLMSGEIAQAKRLKTLEQFKAG 340

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           +IQ++VA+D+A RG+ +  V HVFN+++P+ AE+Y+HRIGRTGRAG  G + +   ++D 
Sbjct: 341 SIQVLVATDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGSTGVSISFAGEDDS 400

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
             + AIEK I +K+     D  +L  P++   IA+    R     P  +     R  N  
Sbjct: 401 FALPAIEKYIGQKLANEVPD-EALMVPMDNAPIARKRGRRPQGTRPTGNRSSGNRSGNSR 459

Query: 415 SQKS 418
            ++S
Sbjct: 460 PRRS 463


>gi|303328313|ref|ZP_07358751.1| RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
 gi|302861643|gb|EFL84579.1| RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
          Length = 593

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 129/368 (35%), Positives = 207/368 (56%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ AV D G+ +P+PIQ+  +P +L   D  G AQTGTGKTA+F LP+L 
Sbjct: 4   SFEELGLSQDLLDAVKDMGFEEPSPIQVLAVPALLAGRDAVGQAQTGTGKTAAFGLPILE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-E 120
            +  G    +  + L+L PTRELA QVA+   K          L + G     +  +   
Sbjct: 64  KVISG----KGVQALVLCPTRELAIQVAEELSKLAARKKGVTILPVYGGQLIERQFRALA 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA V++ TPGRI+DH  RG L ++ ++++V+DEAD MLDMGF   I+ I    P   Q 
Sbjct: 120 KGAQVVVGTPGRIIDHLQRGTLRLDEVDVVVLDEADEMLDMGFREDIEAILERTPDGCQR 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++++S+ F    +  E+ T +    TI       Y     +       + 
Sbjct: 180 ILFSATMPPPIRELSKRF---LREPEMLTIAHKMLTIPAIEQTYYEVRPYQKMDALCRVL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  ++FC+ K+ V  +   L+++G+    +HG++ Q  R +++  F+   ++++V
Sbjct: 237 DSQGFRKALVFCSTKRGVDEVTTHLQQRGYQSDGLHGDLAQAQRDRVMQRFRTEGLEILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV  V N+D+P+  E Y+HR+GRTGRAGR G AFT V   +   +  I
Sbjct: 297 ATDVAARGIDVDDVDAVINYDMPHDVEKYVHRVGRTGRAGRVGSAFTFVTMREQYKLRDI 356

Query: 361 EKLIEKKV 368
            +  + ++
Sbjct: 357 IRCTKARI 364


>gi|15894071|ref|NP_347420.1| ATP-dependent RNA helicase [Clostridium acetobutylicum ATCC 824]
 gi|15023670|gb|AAK78760.1|AE007593_8 ATP-dependent RNA helicase, superfamily II [Clostridium
           acetobutylicum ATCC 824]
 gi|325508198|gb|ADZ19834.1| ATP-dependent RNA helicase, superfamily II [Clostridium
           acetobutylicum EA 2018]
          Length = 374

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 130/370 (35%), Positives = 200/370 (54%), Gaps = 6/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  LG+S  +V  +  +G  +PTP+Q ++I  +    DV G AQTGTGKT +F+LP+ 
Sbjct: 1   MNFKKLGISEALVEVLKKSGITEPTPVQAESISHIKGGRDVIGEAQTGTGKTLAFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +    + V+    LI+ PTRELA Q+ +   K  +  ++ +    GG    +Q KKL 
Sbjct: 61  ENISPTLSAVQ---ALIVTPTRELALQITEQALKLKEAKDINILAAYGGKDIASQQKKLR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LD   R  + +  ++  V+DEAD+ML MGF   ++ I    P  RQ 
Sbjct: 118 GSTHLIIATPGRLLDLIQRKTVDLRKLKSFVLDEADQMLLMGFKNDVEEILKNAPKKRQM 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT++  ++K++  ++ NP  I       T E I            +K         
Sbjct: 178 LCFSATISPAVKKLAYRYMTNPLTISTKKKEVTLENI---EQFVVETTDRKKLEDLCTAL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     IIF   K+ V  L   L ++GF    +H ++ Q  R +I+ +F+ G  Q ++
Sbjct: 235 KQDNPFMAIIFGRTKRRVDELEVELYRRGFDCQKLHSDLTQTKRERIMKSFRNGDFQYLL 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI  V H++N+DVP+  E+YIHRIGRTGRAG  G      A+ D + ++ I
Sbjct: 295 ATDVASRGLDISGVSHIYNYDVPDNPESYIHRIGRTGRAGEEGYTCLFAAERDKRKLEDI 354

Query: 361 EKLIEKKVDW 370
           E  I+ K+  
Sbjct: 355 EAAIKFKIPR 364


>gi|84385236|ref|ZP_00988268.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
 gi|84379833|gb|EAP96684.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
          Length = 399

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 157/400 (39%), Positives = 233/400 (58%), Gaps = 14/400 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V AV   GY KPT IQ K IP+VL   ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSSPIVKAVAKQGYEKPTSIQEKAIPIVLSGKNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R +  R +IL PTRELA QV  N  KY K  NLT   + GG+ ++ Q  +L
Sbjct: 61  EMLSKGETQRKKRIRAVILTPTRELAIQVEQNITKYAKFLNLTSLAMYGGVSYQHQKDRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR++D + +  +  + +E+LV+DEADRMLDMGFI  I  I + +P   Q
Sbjct: 121 IEGVDILVATPGRLIDMYGQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIARLPQNIQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++  ++ ++++ +   + I   + + T  +  +           + + L   +
Sbjct: 181 NLLFSATLSTPVRALAKSAISEAEEI---SIAKTDASKANIEQWLVTVDKDRKSALLSHM 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       +IF   K     L   LEK+G    A H    Q  R KIL++FK+G ++ +
Sbjct: 238 ITDGEWDQALIFIETKHGAAKLVAQLEKRGIQAEAFHSGRSQAIREKILADFKKGRLKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI ++  V N+D+P  A++Y+HRIGRTGRA   G+A + ++K++ K++  
Sbjct: 298 VATGVAARGIDIDNLSRVVNYDIPFPADDYVHRIGRTGRADASGEAISFLSKDNFKNLCI 357

Query: 360 IEK----LIEKKV-----DWLNGDLSSLN-PPLEKIDIAQ 389
           IEK    LIE++V           +S LN  P +K D+ Q
Sbjct: 358 IEKRLGHLIERRVVEGFEPRKEVPISVLNFVPKKKRDLQQ 397


>gi|319937738|ref|ZP_08012141.1| ATP-dependent RNA helicase dbpA [Coprobacillus sp. 29_1]
 gi|319807173|gb|EFW03787.1| ATP-dependent RNA helicase dbpA [Coprobacillus sp. 29_1]
          Length = 479

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 135/374 (36%), Positives = 215/374 (57%), Gaps = 6/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +  ++  A+   GY + T +Q   IP + Q  DV   A+TG+GKTA+F +P+L
Sbjct: 1   MKFKELNIDGRIQDALEKLGYSEATEVQSAVIPELKQERDVIVKAKTGSGKTAAFAIPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +   P+ L+L PTRELA QV ++F+  G    +    + G  P++ Q + L+
Sbjct: 61  DSVVWEENK---PQVLVLTPTRELAIQVKEDFDNIGTYKKIKTLAIFGKQPYKFQTQDLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V++ TPGRILDH  RG    ++++ LV+DEAD ML+MGFI  ++ I   +P  R T
Sbjct: 118 QKTHVVVATPGRILDHLQRGTFDASHLKYLVLDEADEMLNMGFIETVEKIIEKLPVKRTT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT+ +E++K++  F++NP ++ +       + IE       +      A     L 
Sbjct: 178 CLFSATLPEEIKKLAAKFMKNPVQVNIKQSQVINQKIETYAYEVMSYEK---AGFLLKLI 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +   + IIFC  ++ V  +   L K G SV  IHG + Q  R++ +++F+ G +Q +V
Sbjct: 235 VHEKPSSAIIFCETQERVNEVYDMLYKNGISVHKIHGGMLQTDRLENMNDFRLGKVQFLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI ++ HV N+D+P  A+NYIHRIGRT R G+ G A +L++K+D K    I
Sbjct: 295 ATDVAARGIDIENISHVINYDLPREAQNYIHRIGRTARIGKAGIAISLLSKDDYKRRMCI 354

Query: 361 EKLIEKKVDWLNGD 374
           E   E   D  + +
Sbjct: 355 EDYTETSFDIKDNE 368


>gi|312370859|gb|EFR19169.1| hypothetical protein AND_22947 [Anopheles darlingi]
          Length = 490

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 135/432 (31%), Positives = 230/432 (53%), Gaps = 7/432 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LGL   +  A     +  P+ IQ + IPL L   D+ G+A+TG+GKTA+F LP+L  L  
Sbjct: 53  LGLVDTLCQACRALKWKVPSKIQREAIPLALNGKDIIGLAETGSGKTAAFALPILQALLD 112

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
              R       +L PTRELA Q+++ FE  G    +   +++GG+   AQ  +L R   +
Sbjct: 113 NPQRYFAV---VLTPTRELAYQISEQFEALGTMIGVKCCVVVGGMDLVAQALQLARKPHI 169

Query: 126 LICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +I TPGR++DH    K      ++ LV+DEADR+L+M F   +  I  ++P  R+T LFS
Sbjct: 170 IIATPGRLVDHLENTKGFGLKALKYLVMDEADRILNMDFEVEVNKILRVIPRERRTFLFS 229

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           ATMT +++K+    L++P ++EV++   T + +           +K   +    + ++  
Sbjct: 230 ATMTKKVKKLERASLRDPVKVEVSSKYQTVDKLLQ---YYIFIPAKYKDVYLVHILNELA 286

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             + +IFC+   N V     L   G +   +HG + Q  R+  L+ FK  T Q+++++D+
Sbjct: 287 GNSFMIFCSTCNNTVRTALMLRALGLAAVPLHGQMTQNKRLAALNKFKSQTRQILISTDV 346

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           A+RGLDIP V  V N D+P  +++YIHR+GRT RAGR G+A T V + D++    IE L+
Sbjct: 347 ASRGLDIPHVDVVLNLDIPMHSKDYIHRVGRTARAGRAGQAITFVTQYDVELYQRIEHLL 406

Query: 365 EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKE 424
            KK+     +   +    E++  AQ     +   I ++      + K  ++  +     +
Sbjct: 407 SKKLPEYKCEEDEVMALQERVAEAQRTARMEQKDIEERKASKGAKGKRGAATAAGSDDDD 466

Query: 425 SEKISKLQQDIQ 436
           +E+ +  ++ ++
Sbjct: 467 TEQFNGARKRLK 478


>gi|304312547|ref|YP_003812145.1| Putative ATP-dependent RNA helicase, RhlB [gamma proteobacterium
           HdN1]
 gi|301798280|emb|CBL46502.1| Putative ATP-dependent RNA helicase, RhlB [gamma proteobacterium
           HdN1]
          Length = 716

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 133/444 (29%), Positives = 222/444 (50%), Gaps = 14/444 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ L L P++   + + G+   TPIQ + +PL L++ D+ G AQTGTGKTA+F++ ++
Sbjct: 264 LPFSALALDPRLQKGIDELGFSHCTPIQSEALPLSLKQRDIIGKAQTGTGKTAAFLITII 323

Query: 61  TI----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                  E+       PR LIL PTRELA Q+  +     K+ +L +  ++GG+ ++ Q 
Sbjct: 324 QTLLTEPEQEERYNGEPRALILAPTRELALQIEKDALPLLKHTSLNMVSIVGGMDYKKQQ 383

Query: 117 -KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
               +   D+++ TPGR++D      L ++  EILVIDEADRMLDMGFIP ++ +    P
Sbjct: 384 KHLQDEIVDIVVGTPGRLIDFVRGKDLFLSETEILVIDEADRMLDMGFIPDVKRLVRETP 443

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
           +         + T   + +                   +          Y   +++   +
Sbjct: 444 YKTYRQTLLFSAT-FTRDIINLASNWTTDPAQIEIEPESVANASVDQKIYIVTAEQKINV 502

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L +Q  +   ++F N++    +L   L+  G  V  + G I Q  R++ L NF+ G 
Sbjct: 503 LYNLITQQELDRVMVFVNRRDETRDLTTRLKALGLRVAMLSGEIPQHKRLRTLENFRNGR 562

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +++MVA+D+A RG+ I  + HV N+ +P   E+Y+HRIGRTGRAG  G + +   +ED  
Sbjct: 563 LRVMVATDVAGRGIHIEGISHVVNYTLPEDPEDYVHRIGRTGRAGATGTSVSFACEEDAF 622

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ-----HNHARKNNPIPQKSTGFDR-- 408
            + AI+ L+ +++   + D + L   L +I  +Q     H   R  +  PQ+  G DR  
Sbjct: 623 LLPAIQALLGEEIQCTHPD-ADLLADLPEIITSQPTEHTHTEHRTEHRRPQRRGGGDRNS 681

Query: 409 RKKNYSSQKSHIPLKESEKISKLQ 432
             +N +S  SH      E     +
Sbjct: 682 HSRNSNSHNSHRQPHSRESSQARE 705


>gi|6324217|ref|NP_014287.1| Dbp2p [Saccharomyces cerevisiae S288c]
 gi|118284|sp|P24783|DBP2_YEAST RecName: Full=ATP-dependent RNA helicase DBP2; AltName: Full=DEAD
           box protein 2; AltName: Full=p68-like protein
 gi|5272|emb|CAA36874.1| p68 protein [Saccharomyces cerevisiae]
 gi|1302034|emb|CAA95991.1| DBP2 [Saccharomyces cerevisiae]
 gi|285814541|tpg|DAA10435.1| TPA: Dbp2p [Saccharomyces cerevisiae S288c]
          Length = 546

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 209/377 (55%), Gaps = 3/377 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ KPT IQ +  P+ L   D+ GIA TG+GKT S+ LP + 
Sbjct: 114 TFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIV 173

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+G +  +    + GG+P   Q + L
Sbjct: 174 HINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDL 233

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG++++I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 234 SRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 293

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ-L 238
           TL++SAT   E+++++ ++L +P +++V +   +A       V   + + K+  L +   
Sbjct: 294 TLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLE 353

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             SQD     +IF + K+   ++   L + G+   AIHG+ DQR R  +L  F+ G   +
Sbjct: 354 TASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPI 413

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARG+D+  + +V N+D+P   E+Y+HRIGRTGRAG  G A +   +++     
Sbjct: 414 MVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGA 473

Query: 359 AIEKLIEKKVDWLNGDL 375
            +  ++ +    +  +L
Sbjct: 474 KLISIMREANQNIPPEL 490


>gi|240103967|ref|YP_002960276.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Thermococcus
           gammatolerans EJ3]
 gi|239911521|gb|ACS34412.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Thermococcus
           gammatolerans EJ3]
          Length = 403

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 145/396 (36%), Positives = 220/396 (55%), Gaps = 11/396 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           M F  LGLS   + AV   G+  PT IQ + IP +L+   D+ G +QTGTGKTA+F LP+
Sbjct: 12  MSFERLGLSESSLEAVRRKGFEVPTDIQREVIPRLLEGEVDIIGQSQTGTGKTAAFALPI 71

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  ++     V+     IL PTRELA QVA+  +       + V  + GG P   Q + L
Sbjct: 72  IEAIDPNEKTVQAI---ILTPTRELALQVANEIKSLRGKKRVYVYAIYGGQPIGPQIRAL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG  V++ TPGR+LDH NRG L ++++   V+DEADRMLDMGF+  I+ I    P  ++
Sbjct: 129 ERGVHVVVGTPGRVLDHLNRGTLDLSSVRFFVLDEADRMLDMGFVDDIEEIMRRAPQEKR 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM   +  +++ +++NP+ I V+      E ++  +V             ++L 
Sbjct: 189 ILMFSATMPMGILLLAKKYMRNPEVILVSRDEVVPEMVDQEYVEVLPARK-----YEKLK 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +       GIIFC+ K+    L   L +  F   A++G++ Q +R +    FKEG I ++
Sbjct: 244 EVLGEGFYGIIFCHTKRETRELSERLRRDSFRADALNGDMSQAARERTFGRFKEGKINVL 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ ++ HV N+ +P   E YIHRIGRTGR G+ GKA T +   +I     
Sbjct: 304 VATDVAARGLDVREISHVINYSLPMNTEQYIHRIGRTGRMGKRGKAITFLKPGEIGRFRD 363

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           I +  + KV+     LS   P   + +  +  + R+
Sbjct: 364 IAR--KAKVEVKRSKLSERIPKRFREEDLEREYRRR 397


>gi|156052799|ref|XP_001592326.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|160358660|sp|A7EML8|RRP3_SCLS1 RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|154704345|gb|EDO04084.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 482

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 132/430 (30%), Positives = 223/430 (51%), Gaps = 9/430 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 57  SFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQ 116

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    L+L PTRELA Q++ +FE  G    +  A+++GG+    Q   L +
Sbjct: 117 SL---LDKPQPLFGLVLAPTRELAYQISQSFEALGSIIRVKCAVIVGGMDMVPQAIALGK 173

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +    N     + +++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 174 KPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERRT 233

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT++ +++ +    L++P R+ +++      +             K        L 
Sbjct: 234 YLFSATISSKVESLQRASLKDPLRVSISSNKYQTVSTLIQNYIFIPLVHK--DTYLIYLL 291

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ IIF         +   L   GF    +HG + Q SR+  L+ F+ G+ +++V
Sbjct: 292 NEFAGQSAIIFTRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGSREILV 351

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V N+D+P  ++ YIHR+GRT RAG+ G A + V + D++    I
Sbjct: 352 ATDVAARGLDIPSVDVVLNYDMPQDSKTYIHRVGRTARAGKSGHAISFVTQYDVEIWMRI 411

Query: 361 EKLIEKKVDW---LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           E  + KK +    +  ++    P +E+      N  +  +    K     + ++  +  K
Sbjct: 412 EAALGKKQEEYQTVKDEVMVFKPRVEEAQRHARNEMKNLHEDRGKKGAVLKGRRPANGAK 471

Query: 418 SHIPLKESEK 427
                 + E+
Sbjct: 472 RGRDEMDREE 481


>gi|313898319|ref|ZP_07831856.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium sp. HGF2]
 gi|312956701|gb|EFR38332.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium sp. HGF2]
          Length = 585

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 135/371 (36%), Positives = 213/371 (57%), Gaps = 10/371 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L +S +V+ AV + GY   T IQ ++IPL+++  DV G + TGTGKTA+F +P + 
Sbjct: 3   TFNELQISSEVMKAVEEMGYENATDIQAQSIPLIMEGKDVLGRSNTGTGKTAAFGIPAIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            + +G    R P  LI+ PTREL  QVA    K+ K    + +  + GG P + Q + L+
Sbjct: 63  KVCQG---TRYPNALIICPTRELVTQVATELRKFSKYKEGVKIVPIYGGQPIDRQIQLLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGRI+DH NR  L ++N  ++++DEAD ML+MGF   I+ I S++P   + 
Sbjct: 120 RGCGIVVGTPGRIMDHLNRRTLKLDNTNMVILDEADEMLNMGFKEDIEEILSMMPEGNEH 179

Query: 181 LL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
               FSAT   E+ ++++ F  +P R+E+ +   T +T+E  +               ++
Sbjct: 180 QTILFSATWPAEILRITKEFQNDPVRVEIKSAQRTIDTVEQIYYDAPRGKKANA---LRV 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S       +IFCN KK V  LC  L K      ++HG++ Q  R +++  F+ G   +
Sbjct: 237 LLSHYDPDLCMIFCNTKKMVDELCDELNKHNIKAISLHGDMKQEFRSRVMEQFRSGNYPI 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHI 357
           ++A+D+AARG+D+ D+  V NFD+P   E YIHR+GRTGRAG+ G A TLV+  +    I
Sbjct: 297 LIATDVAARGIDVDDIDLVVNFDIPQDNEYYIHRVGRTGRAGKKGLAITLVSGGKQRAGI 356

Query: 358 DAIEKLIEKKV 368
             I +  +  +
Sbjct: 357 RDIIRYTKTNI 367


>gi|109898753|ref|YP_662008.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c]
 gi|109701034|gb|ABG40954.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 458

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 150/367 (40%), Positives = 219/367 (59%), Gaps = 4/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F  LGL  +++ A+   GY   T IQ + IPLVL +HD+  +AQTGTGKTA+F LP +
Sbjct: 1   MSFEALGLRDELIHAIATQGYSVATDIQREAIPLVLAQHDLLAVAQTGTGKTAAFTLPLL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +  K   +V+  R+LI+ PTRELAAQVA + E Y    N+    + GG+  E Q  +L
Sbjct: 61  QRLAAKQSTKVQGVRSLIVTPTRELAAQVAISVEIYSTQLNIRSFAVYGGVRIEPQIAQL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G DVLI TPGR+LD + +  L   N+EILV DEADRMLD+GFI  ++ I SL+P  RQ
Sbjct: 121 QEGVDVLIATPGRLLDLYEQRALHFENLEILVFDEADRMLDLGFIDDVKRIQSLLPVKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT + +++  +   L  PK IEV+  +ST + +   F            +     
Sbjct: 181 TLLFSATFSKQIKHFAREMLNAPKTIEVSAVNSTVDLVAQTFHPIEQARKSAALIQL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      ++F   K+    L   LE  G +  +IH N  Q +R + L+ FK G IQ++
Sbjct: 238 IQQHRWSQTLVFIRTKRTADALVTELEDAGIAAASIHANRTQHARTQALNAFKAGEIQVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  +  V N+D+P   E+Y+HRIGRTGRAG  G A +L + ++I  + +
Sbjct: 298 VATDIAARGIDVSQLPCVVNYDLPYVPEDYVHRIGRTGRAGNTGTAISLFSPDEISQLQS 357

Query: 360 IEKLIEK 366
           +E+ +++
Sbjct: 358 LERYLDQ 364


>gi|255560866|ref|XP_002521446.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223539345|gb|EEF40936.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 781

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 131/378 (34%), Positives = 205/378 (54%), Gaps = 2/378 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   G   +++  VL AG+  PTPIQ ++ P+ LQ  D+  IA+TG+GKT  ++LP   
Sbjct: 164 TFEATGFPSEILREVLSAGFSVPTPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLLPGFI 223

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L++ R   +  P  L+L PTRELA Q+ D   K+G++  ++   L GG P   Q K+L+
Sbjct: 224 HLKRCRNDPQLGPTVLVLSPTRELATQIQDEAVKFGRSSRISCTCLYGGAPKGPQLKELD 283

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+++ TPGR+ D     ++ ++ +  LV+DEADRMLDMGF P I+ I   VP  RQT
Sbjct: 284 RGVDIVVATPGRLNDILEMRRISLSQVSYLVLDEADRMLDMGFEPQIRKIVKEVPSRRQT 343

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+++AT   E++K++ + L NP ++ +                       +     + + 
Sbjct: 344 LMYTATWPREVRKIAADLLVNPVQVNIGNVDELVANKSITQYIEVLAP-MEKHRRLEQIL 402

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + II     K + +       + F   AIHG+  Q  R  +LS F+ G   ++V
Sbjct: 403 RSQEPGSKIIIFCSTKKMCDQLARNLTRTFGAAAIHGDKSQSERDHVLSQFRTGRSPVLV 462

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G A+T    +D K+   +
Sbjct: 463 ATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDAKYASDL 522

Query: 361 EKLIEKKVDWLNGDLSSL 378
            K++E     +  ++  +
Sbjct: 523 IKVLEGASQRVPPEIRDM 540


>gi|187779372|ref|ZP_02995845.1| hypothetical protein CLOSPO_02968 [Clostridium sporogenes ATCC
           15579]
 gi|187772997|gb|EDU36799.1| hypothetical protein CLOSPO_02968 [Clostridium sporogenes ATCC
           15579]
          Length = 374

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 145/370 (39%), Positives = 214/370 (57%), Gaps = 6/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS  ++  + +   ++PTPIQ ++I L+   +DV   AQTGTGKT +F+LPM 
Sbjct: 2   IKFEELGLSDSIIDVLKNQRIIEPTPIQEESIMLIKNGNDVIAEAQTGTGKTLAFLLPMF 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      +   + LI+ PTRELA Q+ +   K  K  +L +    GG    +Q KKL+
Sbjct: 62  ENISP---DINAIQGLIITPTRELAIQITEEAMKLKKAKDLNILAAYGGKDIGSQIKKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH NR  L   +++ LV+DEAD ML MGF   +++I    P  RQT
Sbjct: 119 NNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNEVRSIIDNTPRKRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++   +++PK + +     T + I            ++       + 
Sbjct: 179 LCFSATMNSEVKKLAYKNMRDPKLVIIEKEEVTLKNI---KQVLIETTDRRKQEDLCKIL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     IIFC  K+ V NL   L K+G++   +HG+I Q  R +I+ +FK   IQ ++
Sbjct: 236 DEENPFMAIIFCRTKRRVDNLEEDLYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLI 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HVFN+D+P  AE+YIHRIGRTGRAG  G  F  VA +D   +D I
Sbjct: 296 ATDVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEATLDTI 355

Query: 361 EKLIEKKVDW 370
           EK I+ K+  
Sbjct: 356 EKEIKLKIPR 365


>gi|89094340|ref|ZP_01167281.1| ATP-dependent RNA helicase, DEAD box family protein
           [Oceanospirillum sp. MED92]
 gi|89081399|gb|EAR60630.1| ATP-dependent RNA helicase, DEAD box family protein
           [Oceanospirillum sp. MED92]
          Length = 412

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 139/416 (33%), Positives = 212/416 (50%), Gaps = 11/416 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  V+ AV +AGY + +P+Q + IP VL   D+   A+TGTGKTA+F LP+L
Sbjct: 1   MLFKDLCLSQPVLQAVENAGYHEASPVQAEAIPAVLSGKDLLVGAKTGTGKTAAFALPVL 60

Query: 61  TILEKGRARVRMPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L    ++V+  + +I      PTRELA QV ++F+KY K   L  A+  GG+    Q 
Sbjct: 61  DQLLNTSSQVQPDKKVIKALVLVPTRELAQQVNNSFKKYAKGTGLRSAVAYGGVGIGPQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L++G D+L+ TPGR+LD   +    +  IE L+ DEADRMLDMGF   I+ + S +P 
Sbjct: 121 DQLKQGVDLLVATPGRLLDLCKKKAANLREIEFLIFDEADRMLDMGFRDEIKAVISKLPK 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q        +  L      F +N              +                    
Sbjct: 181 REQKARQVMLFSATLNDRIFKFSKNLLLKPQVIEVDQRGSSADNVDQIIYNCDPARKYEI 240

Query: 237 QLLQSQDTMKNGIIFCNQKKN-VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                ++     ++  +Q K     L   L +QG     IH +  Q+ R   LS FK   
Sbjct: 241 TSYLIKNRGWAQVMVFSQTKQGADKLQQYLSEQGLETDVIHADRTQKQREDALSQFKSQK 300

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARG+DI ++  V N ++P +AE+YIHRIGRTGRAG  G A +L+ +E+  
Sbjct: 301 LKVLVATDVAARGIDIAELPAVINLEMPFKAEDYIHRIGRTGRAGSQGVAISLLIEEENY 360

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            ++AIE LI++++   WL G    L+  +E     + ++ +       K   F +R
Sbjct: 361 LLEAIEALIDERLPQQWLTGFEPDLSREIE----IKRSNTKSAQKRRAKKRAFAKR 412


>gi|323349512|gb|EGA83736.1| Fal1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 399

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 108/381 (28%), Positives = 194/381 (50%), Gaps = 8/381 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+  P+ IQ + I  ++   DV   AQ+GTGKTA+F + +L 
Sbjct: 24  TFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    R +  + LIL PTRELA+Q+    +  G   N+    + GG   +   KK+++
Sbjct: 84  AIDL---RKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQK 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM---LDMGFIPYIQNITSLVPFTR 178
                +      +    + ++L      +++ +         +GF   I +I + +P   
Sbjct: 141 HGCQAVSGTPGRVLDMIKRQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNC 200

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++ SATM  ++ +V+  F+ +P +I V     + E I+   V    +  K   L    
Sbjct: 201 QVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCD-- 258

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +    T+   +IFCN KK V  L   L +  F+V ++HG++ Q  R K++++F+ G  ++
Sbjct: 259 IYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRV 318

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   + K D+  + 
Sbjct: 319 LISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLR 378

Query: 359 AIEKLIEKKVDWLNGDLSSLN 379
            IEK    K++ +  + + L+
Sbjct: 379 EIEKFYSIKINPMPANFAELS 399


>gi|259145266|emb|CAY78530.1| Fal1p [Saccharomyces cerevisiae EC1118]
 gi|323309503|gb|EGA62714.1| Fal1p [Saccharomyces cerevisiae FostersO]
 gi|323334268|gb|EGA75650.1| Fal1p [Saccharomyces cerevisiae AWRI796]
          Length = 399

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 108/381 (28%), Positives = 194/381 (50%), Gaps = 8/381 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+  P+ IQ + I  ++   DV   AQ+GTGKTA+F + +L 
Sbjct: 24  TFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    R +  + LIL PTRELA+Q+    +  G   N+    + GG   +   KK+++
Sbjct: 84  AIDL---RKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQK 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM---LDMGFIPYIQNITSLVPFTR 178
                +      +    + ++L      +++ +         +GF   I +I + +P   
Sbjct: 141 HGCQAVSGTPGRVLDMIKRQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNC 200

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++ SATM  ++ +V+  F+ +P +I V     + E I+   V    +  K   L    
Sbjct: 201 QVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCD-- 258

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +    T+   +IFCN KK V  L   L +  F+V ++HG++ Q  R K++++F+ G  ++
Sbjct: 259 IYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRV 318

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   + K D+  + 
Sbjct: 319 LISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLR 378

Query: 359 AIEKLIEKKVDWLNGDLSSLN 379
            IEK    K++ +  + + L+
Sbjct: 379 EIEKFYSIKINPMPANFAELS 399


>gi|183179390|ref|ZP_02957601.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
 gi|183012801|gb|EDT88101.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
          Length = 397

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 154/399 (38%), Positives = 229/399 (57%), Gaps = 11/399 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V  V   GY KPT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YGK+  L    + GG+  +AQ ++L
Sbjct: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  +++P  I +    ++   I    +                 
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 238 INEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357

Query: 360 IE----KLIEKKVDWLNGDLSSLNPPLEKID-IAQHNHA 393
           IE     LIE++V  + G       P+  +D + +H  A
Sbjct: 358 IESRLGHLIERRV--VEGFEPKKPVPISILDYVPKHKRA 394


>gi|332031410|gb|EGI70923.1| Putative ATP-dependent RNA helicase DDX46 [Acromyrmex echinatior]
          Length = 1013

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 140/443 (31%), Positives = 226/443 (51%), Gaps = 17/443 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G++ K +  +   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 352 SWAQCGVTKKELEVLKKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFR 411

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  LI+ PTREL  Q+  + +K+ K+  L+   + GG     Q  +L
Sbjct: 412 HILDQPPLADGDGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHVCVYGGTGISEQIAEL 471

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 472 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIMENVRP 531

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT   +++ ++   L  P  ++V   S   +           +  +K   L 
Sbjct: 532 DRQTVLFSATFPRQMEALARRILTRPVEVQVGGRSVVCKD--VEQHVVVLEEDQKFYKLL 589

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L       + IIF ++++N   L   L K  +S  ++HG IDQ  R   + +FK G  
Sbjct: 590 EILGHYQDKGSTIIFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTILDFKAGRT 649

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  E  ++
Sbjct: 650 KLLVATSVAARGLDVKHLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITSEQERY 709

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I +           +L+ +  P     + +   AR+     +  TG     K +   
Sbjct: 710 AGDILRA---------HELAGVPVPEPLRQLWEGYKARQAADGKKVHTGGGFSGKGFKFD 760

Query: 417 KSHIPL-KESEKISKLQQDIQEN 438
           +S   L  E +K  K    +Q++
Sbjct: 761 ESEAALANEKKKFQKAALGLQDS 783


>gi|294675271|ref|YP_003575887.1| DEAD/DEAH box helicase [Prevotella ruminicola 23]
 gi|294472504|gb|ADE81893.1| ATP-dependent RNA helicase, DEAD box family [Prevotella ruminicola
           23]
          Length = 600

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 129/385 (33%), Positives = 217/385 (56%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
            F +LG+  ++  A+ + G+V P P+Q   IP +L   +DV  +AQTGTGKTA+F +P+L
Sbjct: 3   TFEELGVCEQIRKAIEELGFVHPMPVQEAVIPYLLGNENDVIALAQTGTGKTAAFGIPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL- 119
             ++  +   R  + L+L PTREL  Q+AD+   + K  +      + G        +  
Sbjct: 63  ERIDTTQ---RYTQALVLSPTRELCLQIADDLRDFAKYMDGVHVEAVYGGAAIEPQMRAL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G ++++ TPGR++D  +RG   +  +  +V+DEAD ML+MGF   I  I   +     
Sbjct: 120 KKGVEIIVATPGRLVDLMHRGIARLEQVTNIVLDEADEMLNMGFSDSINEIFESLSADHH 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSATM+ E+++V++ +L + K I V + +  AE++ H     Y   +K   L  + +
Sbjct: 180 TLMFSATMSKEVERVAKKYLHDYKEIVVGSRNEGAESVNH---IYYMVNAKDKYLALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIFC  K     +   L K G++  ++HG+++Q+ R + +  F+    QL+
Sbjct: 237 VDFYPRIFAIIFCRTKVETQEVADKLIKDGYNAESLHGDLNQQQRDQTMQKFRNHLTQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV NF +P+  E+Y HR GRTGRAG+ G + ++V   +   I  
Sbjct: 297 VATDVAARGLDVDDLTHVINFGLPDDIESYTHRSGRTGRAGKKGTSISIVHSREKFKIRN 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IEK+I K  +++  ++ S     +K
Sbjct: 357 IEKIIGK--EFVKAEIPSAEEICKK 379


>gi|302696669|ref|XP_003038013.1| hypothetical protein SCHCODRAFT_43190 [Schizophyllum commune H4-8]
 gi|300111710|gb|EFJ03111.1| hypothetical protein SCHCODRAFT_43190 [Schizophyllum commune H4-8]
          Length = 674

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 123/455 (27%), Positives = 221/455 (48%), Gaps = 8/455 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL    +  +    Y  PTPIQ + +P ++   DV G+A+TG+GKT +F++P+  
Sbjct: 81  KWSHFGLPASCLDVIKRLNYTAPTPIQAQAVPAIMSGRDVIGVAKTGSGKTIAFLIPLFR 140

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++  R    M  P  L++ PTRELA Q+    + + K  NL      GG P + Q   L
Sbjct: 141 HIKDQRPLEPMEGPIALVMTPTRELATQIHRECKPFLKVLNLRAVCAYGGSPIKDQIADL 200

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++GA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I + +  
Sbjct: 201 KKGAEIIVCTPGRMIDLLTANSGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIINNIRP 260

Query: 177 TRQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            RQT+LFSAT   ++     +   +  +          AE  +   V        +   +
Sbjct: 261 DRQTVLFSATFPKQMDSLARKILKKPLEITVGGRSVVAAEIEQIVEVREEDTKFMRLLEI 320

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              + ++D     +IF ++ +   NL   L ++G+   ++HG  +Q  R   +++FK G 
Sbjct: 321 LGQMYNEDPDCRTLIFVDRHEAADNLLRELMRKGYLCMSLHGGREQVDRDATIADFKAGV 380

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G   T +  E  +
Sbjct: 381 VPIVIATSVAARGLDVKQLKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCVTFIEPEQER 440

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQ-HNHARKNNPIPQKSTGFDRRKKNY 413
           +   I + ++     +  +L ++ N  L+K+   + H                +R  K  
Sbjct: 441 YSVDIYRALKASNASVPKELEAMANGFLDKVKAGKAHVAGSGFGGKGLDRLDSERDAKQK 500

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
           + +K++    + +   K     +E    +    G+
Sbjct: 501 AERKAYGEPDQPQAEEKAANSTEEATVKATANSGD 535


>gi|262201927|ref|YP_003273135.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
 gi|262085274|gb|ACY21242.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
           43247]
          Length = 597

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 143/374 (38%), Positives = 217/374 (58%), Gaps = 6/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL +  +V  AV D GY  P+PIQ  TIP ++   DV G+AQTGTGKTA+F +P+L
Sbjct: 17  LTFDDLDIDSRVRAAVSDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIPIL 76

Query: 61  TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNK 117
           + LE     +  R P+ L+L PTRELA QVA+ F +Y  +      L I  G  +  Q  
Sbjct: 77  SRLEGAGDGSGPRKPQALVLAPTRELALQVAEAFGRYSAHMPEVRVLPIYGGQSYGVQLA 136

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L RGA V++ TPGR++DH +RG L ++ +  LV+DEAD ML MGF   ++ I +  P  
Sbjct: 137 GLRRGAQVIVGTPGRVIDHLDRGTLDISELRFLVLDEADEMLTMGFAEDVERILAETPDD 196

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +Q  LFSATM   ++++++ +L +P+ I V + ++TA+ I   ++    Q          
Sbjct: 197 KQVALFSATMPSAIRRLAQRYLNDPQEITVKSKTATAQNITQRYLQVSHQRK---LDALT 253

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                +T    I+F   K+    L   L  +GFS  AI+G++ Q  R + ++  K G I 
Sbjct: 254 RFLEVETFDAMIVFVRTKQATEELAEKLRSRGFSAVAINGDMAQAQRERTINQLKSGGID 313

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  +   +
Sbjct: 314 ILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGNALLFVSPRERHLL 373

Query: 358 DAIEKLIEKKVDWL 371
            +IE+     +  +
Sbjct: 374 RSIERATRSTLTEI 387


>gi|326916320|ref|XP_003204456.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
           [Meleagris gallopavo]
          Length = 571

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 139/405 (34%), Positives = 219/405 (54%), Gaps = 8/405 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++  +   G+ KPTPIQ +  P++LQ  D+ GIAQTGTGKT ++++P    
Sbjct: 172 FEQY---PDIMANIRKIGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIH 228

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                  +     P  L+L PTRELA QV     KY      ++ +  GG   +AQ   +
Sbjct: 229 LASQPIPKDERGGPGMLVLAPTRELALQVEAECLKYTYKGYKSICIY-GGGDRKAQINVV 287

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D++I TPGR+ D      + + +I  LV+DEAD+MLDMGF P I  I   V   RQ
Sbjct: 288 TKGVDIVIATPGRLNDLQMNNFINLKSITYLVLDEADKMLDMGFEPQIMKILIDVRPDRQ 347

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++ SAT  D ++++++++L+NP  + V T    A       V    +  KK  + +  +
Sbjct: 348 TVMTSATWPDGVRRLAKSYLRNPMIVYVGTLDLAAVNTVEQKVVVINEEEKKAFM-ENFI 406

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S       IIF  +K    ++   L  +G  V ++HG+ +Q  R + L +FK+G ++++
Sbjct: 407 DSMKPKDKAIIFVGKKSTADDIASDLGVKGVPVQSLHGDREQCDREQALDDFKKGKVRIL 466

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLA+RGLD+ D+ HVFNFD P   E Y+HR+GRTGRAGR GKA TL+ K+D K    
Sbjct: 467 VATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAASE 526

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           +  ++++    +  +L S+    ++  + +        P  + S 
Sbjct: 527 LIDILQRANQVVPDELISMAERYKQCQMRKEMEKDILRPQRKSSK 571


>gi|325299227|ref|YP_004259144.1| DEAD/DEAH box helicase domain-containing protein [Bacteroides
           salanitronis DSM 18170]
 gi|324318780|gb|ADY36671.1| DEAD/DEAH box helicase domain protein [Bacteroides salanitronis DSM
           18170]
          Length = 618

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 133/368 (36%), Positives = 218/368 (59%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG++P++  A+ + GY  P P+Q + IP +L   +DV  +AQTGTGKTA+F LP++
Sbjct: 3   TFEELGVAPEIRKAIEEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             ++ G    R+P+ LIL PTREL  Q+A +   Y K   +L +  + GG   E+Q K L
Sbjct: 63  QKIDVGN---RVPQALILCPTRELCLQIAGDLNDYSKYITDLKIIPVYGGSSIESQIKSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G  +++ TPGR++D   R    +  I  +V+DEAD ML+MGF   I  I   VP  R 
Sbjct: 120 KKGVHIIVATPGRLIDLIERKVAKLETIRDVVMDEADEMLNMGFTDSINAILEKVPEDRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSATM+ E+ ++++ +L++ K I + T +   E  ++     Y  ++K   L  + +
Sbjct: 180 TLMFSATMSPEISRIAKTYLRDAKEITIGTKN---EGTKNVHHVAYIVHAKDKYLALKRV 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                M  GIIFC  +     +   L + G++  ++HG + Q  R  ++  F++  +QL+
Sbjct: 237 VDFYPMIYGIIFCRTRLETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRHLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVNDLTHVINYGLPDDVESYTHRSGRTGRAGKTGISIAIMNLREKGKMKQ 356

Query: 360 IEKLIEKK 367
           IE+++ KK
Sbjct: 357 IERILNKK 364


>gi|317504343|ref|ZP_07962329.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae
           DSM 15606]
 gi|315664534|gb|EFV04215.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae
           DSM 15606]
          Length = 625

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 136/385 (35%), Positives = 220/385 (57%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F +LG++  +  A+ + G+  P P+Q + IP +L    DV  +AQTGTGKTA+F LP+L
Sbjct: 3   TFEELGVNENIRRAIEELGFEHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAFGLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             +       +     +L PTREL  Q+AD+ + + K  +    + + G      Q + +
Sbjct: 63  QKVNAQDRATQAI---VLSPTRELCVQIADDLKDFSKYIDGMHIVPVYGGADIRPQIRAI 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  V++ TPGR++D  NRG + +  +  +V+DEAD ML+MGF   I  I   +P  R 
Sbjct: 120 KHGTQVIVATPGRLVDLINRGVMELEKVNNIVLDEADEMLNMGFSDSINAIFEQLPEDRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E++KV++++L + K I V + +  AE + H     Y  +SK   L  + +
Sbjct: 180 TLLFSATMSREVEKVAKSYLHDYKEIVVGSRNEGAEHVNH---IYYLVHSKDKYLALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIFC  K     +   L K G++  A+HG++ Q+ R   +  F++ T+QL+
Sbjct: 237 VDFHPRIFAIIFCRTKAETQEVADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHTVQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G + +++  ++   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHIKEKWKVRQ 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IEK I K  D+++G+L       +K
Sbjct: 357 IEKQIGK--DFIDGELPKSEEICKK 379


>gi|296159198|ref|ZP_06842024.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295890457|gb|EFG70249.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 481

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 151/370 (40%), Positives = 216/370 (58%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  V D  Y  PTP+Q K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIDPLLRNVQDLNYQTPTPVQAKAIPAVLSGKDVMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +    V   R    +L PTRELA QV  +F  YGK  +L      GG+    Q  K
Sbjct: 61  QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIDYGKGLDLRFLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPVQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT TD+++ ++   L++P  I V+ P++TA  I            K    L   
Sbjct: 181 QTLLFSATFTDDIRAMAAGILRDPLNISVSPPNATASKI---RQWVVTVDKKNKPDLFMH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +++  ++ ++F   +  V  L   L++ G++V  IHG+  Q +R++ L  FK G +Q+
Sbjct: 238 LVAENNWRHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V +D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVVTDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEKKV 368
           AIE LI + +
Sbjct: 358 AIEALIRQTL 367


>gi|119896607|ref|YP_931820.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
 gi|119669020|emb|CAL92933.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
          Length = 447

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 153/370 (41%), Positives = 225/370 (60%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F  LGL+ +++ AV  +GY  PTP+Q + IP  +   D+   + TG+GKTA+F LP +
Sbjct: 1   MTFHALGLAEELIAAVEQSGYTTPTPVQEQAIPAAIAGGDLLVSSHTGSGKTAAFTLPSL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
             ++ +  A    PR L+L PTRELA QV +  + YG+       A L+GG PF AQ K+
Sbjct: 61  HRLVGRRPAPNSGPRVLVLTPTRELAQQVEEAVKTYGRALRWLNTACLVGGAPFFAQVKQ 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R  DV++ TPGR+LDH NR KL ++++E LV+DEADRMLDMGF   I+ I   +P +R
Sbjct: 121 LSRPVDVVVATPGRLLDHLNRRKLKLSDVETLVLDEADRMLDMGFAEDIEAIVGAIPASR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+   +  ++    +NP+RIE+ +  +    IE   +       K    L + 
Sbjct: 181 QTLLFSATLDGVVGALANKLTRNPQRIEIASTEAKRGNIEQRLMFADDMGHKSR--LLEA 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   D ++  ++F   KK+   L  SL+++GFS  A+HG++ Q  R + L   ++G I +
Sbjct: 239 LLGTDGLQQAVVFTATKKSADELSLSLQEKGFSAAALHGDMHQTVRNRTLQRLRQGRIGV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + HV NFD P + E+Y+HRIGRTGRAGR G A TL    +   I 
Sbjct: 299 LVATDVAARGIDVAGISHVINFDPPRQVEDYVHRIGRTGRAGRDGIAITLSGPRETGLIR 358

Query: 359 AIEKLIEKKV 368
           AIE+    ++
Sbjct: 359 AIERFTGDRL 368


>gi|114777669|ref|ZP_01452629.1| putative ATP-dependent RNA helicase [Mariprofundus ferrooxydans
           PV-1]
 gi|114551885|gb|EAU54419.1| putative ATP-dependent RNA helicase [Mariprofundus ferrooxydans
           PV-1]
          Length = 415

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 124/374 (33%), Positives = 202/374 (54%), Gaps = 4/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    +   +   +   G+ + T IQ K IP +++  DV  IAQTGTGKTA+F +P++
Sbjct: 1   MKFDRYYICADLKKNLRALGFKRTTDIQFKAIPSIMEGEDVLAIAQTGTGKTAAFAIPVI 60

Query: 61  T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 K  ++    + +++ PTRELA Q+   FE    +  + V  L GG+  E Q  K
Sbjct: 61  DKIHRFKTNSQSYGIKCIVMVPTRELALQIGKVFESLANHTRVKVFTLHGGVEQERQIAK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G DVLI TPGR+ D  N+  + +  +  LV+DEAD MLD+GFI  I+ I  ++    
Sbjct: 121 LQDGIDVLIATPGRMFDLINQQAIRLEGVSTLVLDEADHMLDLGFIEDIRYIKKMLKKKH 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL FSAT+ DE++K++ + +++       +P          FV       K+       
Sbjct: 181 QTLFFSATINDEIKKLAYSQVKSEAIRIQVSPEDRIAKNVSHFVMFVEMDDKRFF--LDR 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     I+F   +     +  ++ + GF   +IHG+ DQ  R   +  F++G  ++
Sbjct: 239 FLQDHPEGKVIVFVRTRVRAERVVRAMARAGFDTVSIHGDKDQDERATAMQAFRKGDCRV 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D++ARG+D+PDV  V N+D+P + ENY+HR+GRTGR  + G A +  + E+   ++
Sbjct: 299 LIATDVSARGIDVPDVDFVINYDLPEKPENYVHRVGRTGRGMKLGDAISFCSSEEKPLLE 358

Query: 359 AIEKLIEKKVDWLN 372
           AIE  I K ++ +N
Sbjct: 359 AIEDFIAKPIEVMN 372


>gi|319654684|ref|ZP_08008763.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
 gi|317393600|gb|EFV74359.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
          Length = 472

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 137/365 (37%), Positives = 216/365 (59%), Gaps = 8/365 (2%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
            G+ + TPIQ +TIPL L+  D+ G AQTGTGKTA+F +PM+  ++         + +++
Sbjct: 1   MGFEEATPIQAQTIPLSLENKDLIGQAQTGTGKTAAFGIPMIDKIDNT---KDFIQGIVI 57

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QV++   K G      V  + GG     Q + L+    +++ TPGRILDH N
Sbjct: 58  APTRELAIQVSEELYKIGYGKRTKVLSIYGGQDINRQIRALKNKPHIIVGTPGRILDHIN 117

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           R  + ++++   ++DEAD ML+MGFI  I+ I + +P  RQTLLFSATM   +++++E F
Sbjct: 118 RKTMRLDHVHTAILDEADEMLNMGFIDDIEAILAQIPEERQTLLFSATMPAPIRRMAERF 177

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           ++ P+ + V     T  +IE         + K    +   L    + +  I+F   K+ V
Sbjct: 178 MKEPQIVRVKAKEMTVSSIEQ---YYIEVHEKNKFDVLTRLLDIQSPELAIVFGRTKRRV 234

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             L  +L  +G+    IHG++ Q  R+ +L  FKEG+I ++VA+D+AARGLDI  V HV+
Sbjct: 235 DELAEALNLRGYMAEGIHGDLSQAKRISVLRKFKEGSIDVLVATDVAARGLDISGVTHVY 294

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           NFD+P   E+Y+HRIGRTGRAG+ G A T +   +  ++  +E+  ++K++ +  D  +L
Sbjct: 295 NFDIPQDPESYVHRIGRTGRAGKTGVAMTFINPREKSYLHVVERTTKRKMERM--DAPTL 352

Query: 379 NPPLE 383
           +  LE
Sbjct: 353 DEALE 357


>gi|241747700|ref|XP_002414349.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215508203|gb|EEC17657.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 519

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 134/418 (32%), Positives = 212/418 (50%), Gaps = 11/418 (2%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--MLT 61
            +               + +P+PIQ +  P+VL   D+ GIAQTG+GKT ++VLP  +  
Sbjct: 97  DECNFPEPCRELFRSKNFTEPSPIQAQAWPVVLGGRDLVGIAQTGSGKTLAYVLPAAIHM 156

Query: 62  ILEKGRARVRMPRTLILEPTRE-LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +    R   P  ++L PTRE +       +E  G  + L  A + GG+    Q  +L+
Sbjct: 157 SDQPQPERDEGPIGVVLAPTRELVQQISQVAYEWCGGAFRLKGAPVYGGVSKGPQIARLQ 216

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA + I TPGR+LD    G + +     LV+DEADRMLDMGF P I+ I       RQT
Sbjct: 217 GGAHICIATPGRLLDILETGAINLLRCSYLVLDEADRMLDMGFEPQIRKIVDQTRPDRQT 276

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ-LL 239
           +++SAT   E++ ++E FL +  +I V +    A       V     + K+  LL+    
Sbjct: 277 VMWSATWPSEVRDLAEEFLTDHVQITVGSEDLCANHNIRQVVHVCQGFEKEEKLLETLRE 336

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +  +  +IF   K  VV +  +L K GF   A HG++ Q  R   L  F+ G   ++
Sbjct: 337 INAEGDQRTLIFVATKARVVTIVQNLYKNGFRAVATHGDLSQNKRDIALDRFRSGKTPIL 396

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ +V N+D P+ +E+Y+HRIGRTGR+ R G A TL   ++      
Sbjct: 397 VATDVAARGLDVSDIKYVINYDYPDTSESYVHRIGRTGRSNRSGTAITLFTPDNAGQAKQ 456

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           +  ++++    +N +L  L        ++Q    R+  P  Q    +DRR ++    +
Sbjct: 457 LVSVLQEAKQEVNPELLELV----DRQVSQKFANRRRRPAQQ---SWDRRPQHRQGDR 507


>gi|168021119|ref|XP_001763089.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685572|gb|EDQ71966.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 514

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 127/379 (33%), Positives = 202/379 (53%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +      V+  VL AG+ +PT IQ +  P+ L+  D+ G+A+TG+GKT +++LP + 
Sbjct: 95  TFEEASFPDYVLHEVLKAGFTEPTAIQAQGWPMALKGRDLIGLAETGSGKTLAYLLPAIV 154

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA Q+     K+G +  +    + GG P   Q + L
Sbjct: 155 HVNAQPYLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKNTCIYGGAPKGPQIRDL 214

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G +V+I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 215 QKGVEVVIATPGRLIDMLEGRHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 274

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL +SAT   E++ ++  FL +P ++ + +    A       V   +++ K    L +LL
Sbjct: 275 TLYWSATWPKEVEFLARQFLNDPYKVTIGSSDLKANHAIDQVVEVVSEHEKY-PKLIKLL 333

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        ++F   K+    +   L   G+   +IHG+  Q  R  +LS FK G   +M
Sbjct: 334 EEIMDGSRLLVFMETKRGCDQVTRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 393

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD+ D+  V N+D P   E+Y+HRIGRTGRAG  G A+T     + KH   
Sbjct: 394 TATDVAARGLDVKDIKCVINYDFPGSCEDYVHRIGRTGRAGAKGAAYTFFTAANAKHAKE 453

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +  ++ +    ++  L ++
Sbjct: 454 LVSILVEAGQPVSSQLQAM 472


>gi|6320224|ref|NP_010304.1| Fal1p [Saccharomyces cerevisiae S288c]
 gi|2500524|sp|Q12099|FAL1_YEAST RecName: Full=ATP-dependent RNA helicase FAL1; AltName:
           Full=Translation initiation factor four A-like protein 1
 gi|160385737|sp|A6ZXY5|FAL1_YEAS7 RecName: Full=ATP-dependent RNA helicase FAL1; AltName:
           Full=Translation initiation factor four A-like protein 1
 gi|840874|emb|CAA89846.1| unknown [Saccharomyces cerevisiae]
 gi|1216228|emb|CAA65213.1| orf:PZC399 [Saccharomyces cerevisiae]
 gi|1431450|emb|CAA98842.1| FAL1 [Saccharomyces cerevisiae]
 gi|51830220|gb|AAU09684.1| YDR021W [Saccharomyces cerevisiae]
 gi|151942009|gb|EDN60365.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|256273263|gb|EEU08206.1| Fal1p [Saccharomyces cerevisiae JAY291]
 gi|285811043|tpg|DAA11867.1| TPA: Fal1p [Saccharomyces cerevisiae S288c]
          Length = 399

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 108/381 (28%), Positives = 194/381 (50%), Gaps = 8/381 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+  P+ IQ + I  ++   DV   AQ+GTGKTA+F + +L 
Sbjct: 24  TFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    R +  + LIL PTRELA+Q+    +  G   N+    + GG   +   KK+++
Sbjct: 84  AIDL---RKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQK 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM---LDMGFIPYIQNITSLVPFTR 178
                +      +    + ++L      +++ +         +GF   I +I + +P   
Sbjct: 141 HGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNC 200

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++ SATM  ++ +V+  F+ +P +I V     + E I+   V    +  K   L    
Sbjct: 201 QVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCD-- 258

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +    T+   +IFCN KK V  L   L +  F+V ++HG++ Q  R K++++F+ G  ++
Sbjct: 259 IYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRV 318

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   + K D+  + 
Sbjct: 319 LISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLR 378

Query: 359 AIEKLIEKKVDWLNGDLSSLN 379
            IEK    K++ +  + + L+
Sbjct: 379 EIEKFYSIKINPMPANFAELS 399


>gi|332881684|ref|ZP_08449332.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332680323|gb|EGJ53272.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 679

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 140/378 (37%), Positives = 220/378 (58%), Gaps = 10/378 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60
            F +LG+S ++  A+ + GY  P P+Q + IP +L   +DV  +AQTGTGKTA++ LP+L
Sbjct: 3   TFEELGVSAEIRQAIEEMGYENPMPVQEEVIPYLLGVNNDVVALAQTGTGKTAAYGLPVL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             ++  R    + + LIL PTREL  Q+AD+ E Y K       L + G    E Q + L
Sbjct: 63  QKVDATR---NVTQALILSPTRELCLQIADDLENYSKYLPGVRVLPVYGGANIEPQIRTL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  V++ TPGR++D   RG   + ++E +V+DEAD ML MGF   I  I + VP    
Sbjct: 120 RKGVQVIVATPGRLIDLMERGAASLEHVENVVLDEADEMLSMGFTESIDKILAGVPENHN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E++++S+ +L+  K I V + +  AET+ H     Y  ++K   L  + +
Sbjct: 180 TLLFSATMSREIERISKKYLREAKEIVVGSRNEGAETVNH---VYYMVHAKDKYLALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIFC  +     +   L + G++  ++HG++ Q+ R   +  F++  +Q +
Sbjct: 237 VDYYPKIYAIIFCRTRMETQEVADKLIQDGYNADSLHGDLSQQQRDLTMQKFRQHRVQFL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  ENY HR GRTGRAG+ G +  +V   +   I  
Sbjct: 297 VATDVAARGLDVEDLTHVINYGMPDDIENYTHRSGRTGRAGKKGTSICIVHTRERSKIRE 356

Query: 360 IEKLIEKKVDWLNGDLSS 377
           IEK+I K  +++ G++ S
Sbjct: 357 IEKVIGK--EFVKGEMPS 372


>gi|332244020|ref|XP_003271168.1| PREDICTED: probable ATP-dependent RNA helicase DDX43 [Nomascus
           leucogenys]
          Length = 649

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 143/412 (34%), Positives = 221/412 (53%), Gaps = 11/412 (2%)

Query: 2   DFAD-LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F D     P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT  +++P  
Sbjct: 243 TFDDAFQCYPEVMETIKKAGFPKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGF 302

Query: 61  TILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L+       +   P  L+L PTRELA QV     KY     L    + GG   + Q +
Sbjct: 303 IHLDLQPTLKGQRNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIE 361

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L +G D++I TPGR+ D      + + NI  LV+DEAD+MLDMGF P I  I   V   
Sbjct: 362 ELRKGVDIIIATPGRLNDLQMNNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPD 421

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++ SAT    + ++++++L+ P  + V T    A +     +    +  K   + Q 
Sbjct: 422 RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHM-QT 480

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            LQ+  +    I+F ++K  V +L   L     S+ ++HG+ +QR R K L NFK G ++
Sbjct: 481 FLQNMSSTDKVIVFVSRKAVVDHLSSDLILGNISIESLHGDREQRDREKALENFKTGKVR 540

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+DLA+RGLD+ DV HV+NFD P   E Y+HRIGRTGRAGR G + T + + D +  
Sbjct: 541 ILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVA 600

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             +  ++E+    +  +L S+           H   R+     ++  G  ++
Sbjct: 601 SELINILERANQSIPEELVSMAE-----RFKAHQQKREMERKTERPQGRPKK 647


>gi|221504486|gb|EEE30159.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 1544

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 137/470 (29%), Positives = 221/470 (47%), Gaps = 18/470 (3%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
             F   GL  K+V  +   G  +P PIQ++ IP ++   DV  +A+TG+GKT ++ LP++ 
Sbjct: 974  TFFQCGLPDKIVKYLTLRGITEPFPIQMQAIPCLMCGRDVIAVAETGSGKTLAYGLPLIR 1033

Query: 62   ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   + +      +  ++ PTREL  Q+     +  K  +L      GG    +Q   +
Sbjct: 1034 HVLSVKQQDFRDGAIALVIAPTRELCNQIFKEINRCCKLVDLNAVACYGGAGIGSQLGAI 1093

Query: 120  ERGADVLICTPGRILD---HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +RG +V++ TPGR++D           +  +  +V+DEADRM D GF P + +I +    
Sbjct: 1094 KRGVEVIVGTPGRLIDILTMNGGRLTSLKRVTFIVLDEADRMFDFGFEPQVTSIIASSRP 1153

Query: 177  TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             RQT LFSAT    ++ ++   LQ P  I V     TA  ++        +  +K   L 
Sbjct: 1154 DRQTCLFSATFPPHIEALARRILQKPVEIIVGEKGRTAANVQQYV--EVMEEERKFFRLL 1211

Query: 237  QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            QLL       + IIF N++     L   L K G+    +HG  DQ  R   +  F++G  
Sbjct: 1212 QLLGEWQEHGSVIIFVNRQVEADELFTELLKYGYQAATLHGGQDQTDREFTIQEFQDGVR 1271

Query: 297  QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             L++A+ +AARGLD      V N   PN  E+Y+HRIGRTGRAGR G A+T + KED   
Sbjct: 1272 TLLIATSVAARGLDCKHCVLVINMTCPNHIEDYVHRIGRTGRAGRIGVAYTFLTKEDADK 1331

Query: 357  IDAIEKLIEKKVDWLNGDLSSLNPP-LEKIDIAQHNHARKNNPIPQK------STGFDRR 409
             D +EK + +    +   LS L+    ++ ++  H   +K             ++   R+
Sbjct: 1332 ADDLEKALTQSGQAVPQALSDLSAQYKQECNLGMHEKKKKGGGGFGGRGFSFSASEKSRQ 1391

Query: 410  KKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRG 459
            ++     K  + L++  +  +          D LG  G+      P+ RG
Sbjct: 1392 QRERQQAKKELGLEKDAEDEEFLDADLLAPEDVLGPSGD----REPEGRG 1437


>gi|146308743|ref|YP_001189208.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145576944|gb|ABP86476.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 447

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 147/368 (39%), Positives = 222/368 (60%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  + +  Y  PTP+Q + IP +L+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRTLTELDYQTPTPVQSQAIPAMLKGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV  +F+ YG++  L+   + GG+    Q  K
Sbjct: 61  QRLTLEGPQVASNAVRALVLVPTRELAEQVLQSFQAYGQHLPLSSYAVYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD + +  +    ++ LV+DEADRMLD+GF   +  + S +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLYRQNAVKFAQLQTLVLDEADRMLDLGFARELDELFSALPKRR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D +++++   L++P  +EV+  ++ A+++            K+ + L   
Sbjct: 181 QTLLFSATFSDVIRQMAGELLRDPVSVEVSPRNAAAKSV---KQWLIPVDKKRKSELFLH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +      ++F   +K V  L   L   G S  +IHG+  Q SR++ L  FK G +Q+
Sbjct: 238 LLQEKRWGQVLVFAKTRKGVDQLEQELLAMGVSADSIHGDKPQPSRLRALERFKAGEVQI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPLVVNLDLPINAEDYVHRIGRTGRAGSTGEAVSLVCADEVELLA 357

Query: 359 AIEKLIEK 366
           AIE+LI +
Sbjct: 358 AIERLIRQ 365


>gi|307548813|dbj|BAJ19133.1| vasa [Misgurnus anguillicaudatus]
          Length = 644

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 142/431 (32%), Positives = 225/431 (52%), Gaps = 31/431 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL   +   V+ +GY KPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 201 MTFDEAGLCESLNKNVVKSGYTKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 260

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + V+ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 261 QRLMTDGVAASKFSEVQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGTNTGY 320

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
             +++ +G +VL  TPGR+LD   RGK+ ++ +  LV+DEADRMLDMGF P ++      
Sbjct: 321 TIREVLKGCNVLCGTPGRLLDIIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRKLVASP 380

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSAT  +++Q+++ +FL+             A +     +    Q+SK
Sbjct: 381 GMPSKEDRQTLLFSATYPEDIQRLAADFLKVDYIFLAVGVVGGACSDVEQSIIQVTQFSK 440

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  LL+ L  + +  +  ++F   K++   +   L ++     +IHG+ +QR R K LS+
Sbjct: 441 REQLLELLRTTGN--ERTMVFVGTKRSADFIATFLCQEKIPTTSIHGDREQREREKALSD 498

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI  V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 499 FRTGQCPVLVATSVAARGLDIEHVQHVVNFDLPSSIDEYVHRIGRTGRCGNIGRAVSFFD 558

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            E D     ++       V  L+G    +   LE+I  + H            +TGF+ R
Sbjct: 559 PEPDTPLARSL-------VKVLSGAQQEVPKWLEEIAFSAH-----------GTTGFNPR 600

Query: 410 KKNYSSQKSHI 420
            K ++S  +  
Sbjct: 601 GKVFASTDTRR 611


>gi|291165177|gb|ADD81193.1| vasa [Auxis rochei]
          Length = 627

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 127/388 (32%), Positives = 204/388 (52%), Gaps = 13/388 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 193 MTFDEAALCESLRKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 252

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + ++ P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 253 QQLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGH 312

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
           Q +++ RG +V+  TPGR+LD   RGK+ +  +  LV+DEADRMLDMGF P ++      
Sbjct: 313 QIREISRGCNVVCGTPGRLLDMIGRGKVGLTKLRYLVLDEADRMLDMGFEPDMRRLVGSP 372

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++Q+++ +FL+             A +          ++SK
Sbjct: 373 GMPSKENRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSK 432

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +       L      +  ++F   K+    +   L ++     +IHG+ +QR R + L++
Sbjct: 433 RE--QLLDLLKTTGTERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALAD 490

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDIPDV HV NFD+PN  + Y+HRIGRTGR G  G+A +   
Sbjct: 491 FRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYD 550

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSS 377
            + D +   ++  ++ K    +   L  
Sbjct: 551 PDADGQLARSLITVLSKAQQEVPSWLEE 578


>gi|296129739|ref|YP_003636989.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
 gi|296021554|gb|ADG74790.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
          Length = 581

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 138/371 (37%), Positives = 213/371 (57%), Gaps = 7/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL P+V+ AV   G+  PTP+Q +TIP +L   DV G+AQTGTGKTA+F LP+L 
Sbjct: 16  TFADLGLDPRVLSAVHGLGFTAPTPVQAQTIPALLAGRDVVGVAQTGTGKTAAFGLPLLQ 75

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     V   + ++L PTRELA QVAD    +  +      + +  G P+  Q + L 
Sbjct: 76  SVDP---DVAAVQVVVLTPTRELAMQVADALTSFAADMPGLQVVAVYGGSPYLPQQRALA 132

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH +R  L ++++ +LV+DEAD ML MGF   +  + S  P  RQ 
Sbjct: 133 RGAQVVVGTPGRVIDHIDRRTLRLDDVRMLVLDEADEMLRMGFAEDVDKVLSGTPAGRQV 192

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  ++++V++  L NP  + V+  SST E++   +        +  A     + 
Sbjct: 193 ALFSATMPPQIRRVADQHLVNPVSVAVSRQSSTVESVRQTYAVVPY---RHKAGALARVL 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       I+F   ++    + + L ++G +   I G++ Q  R +I+   + GT+ ++V
Sbjct: 250 AVSDADAAIVFVRTREAAEEIGNVLVQRGIAAAHISGDVAQADRERIVERLRSGTLDVLV 309

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +G V N D+P   E Y+HRIGRTGRAGR G+A T V   +   +  I
Sbjct: 310 ATDVAARGLDVERIGLVVNLDLPREPEAYVHRIGRTGRAGRTGEALTFVTPSERPRLRQI 369

Query: 361 EKLIEKKVDWL 371
           E+     +  +
Sbjct: 370 ERTTRTPLVEI 380


>gi|221482438|gb|EEE20786.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
          Length = 1544

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 137/470 (29%), Positives = 221/470 (47%), Gaps = 18/470 (3%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
             F   GL  K+V  +   G  +P PIQ++ IP ++   DV  +A+TG+GKT ++ LP++ 
Sbjct: 974  TFFQCGLPDKIVKYLTLRGITEPFPIQMQAIPCLMCGRDVIAVAETGSGKTLAYGLPLIR 1033

Query: 62   ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   + +      +  ++ PTREL  Q+     +  K  +L      GG    +Q   +
Sbjct: 1034 HVLSVKQQDFRDGAIALVIAPTRELCNQIFKEINRCCKLVDLNAVACYGGAGIGSQLGAI 1093

Query: 120  ERGADVLICTPGRILD---HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +RG +V++ TPGR++D           +  +  +V+DEADRM D GF P + +I +    
Sbjct: 1094 KRGVEVIVGTPGRLIDILTMNGGRLTSLKRVTFIVLDEADRMFDFGFEPQVTSIIASSRP 1153

Query: 177  TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             RQT LFSAT    ++ ++   LQ P  I V     TA  ++        +  +K   L 
Sbjct: 1154 DRQTCLFSATFPPHIEALARRILQKPVEIIVGEKGRTAANVQQYV--EVMEEERKFFRLL 1211

Query: 237  QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            QLL       + IIF N++     L   L K G+    +HG  DQ  R   +  F++G  
Sbjct: 1212 QLLGEWQEHGSVIIFVNRQVEADELFTELLKYGYQAATLHGGQDQTDREFTIQEFQDGVR 1271

Query: 297  QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             L++A+ +AARGLD      V N   PN  E+Y+HRIGRTGRAGR G A+T + KED   
Sbjct: 1272 TLLIATSVAARGLDCKHCVLVINMTCPNHIEDYVHRIGRTGRAGRIGVAYTFLTKEDADK 1331

Query: 357  IDAIEKLIEKKVDWLNGDLSSLNPP-LEKIDIAQHNHARKNNPIPQK------STGFDRR 409
             D +EK + +    +   LS L+    ++ ++  H   +K             ++   R+
Sbjct: 1332 ADDLEKALTQSGQAVPQALSDLSAQYKQECNLGMHEKKKKGGGGFGGRGFSFSASEKSRQ 1391

Query: 410  KKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRG 459
            ++     K  + L++  +  +          D LG  G+      P+ RG
Sbjct: 1392 QRERQQAKKELGLEKDAEDEEFLDADLLAPEDVLGPSGD----REPEGRG 1437


>gi|258546120|ref|ZP_05706354.1| ATP-dependent RNA helicase RhlB [Cardiobacterium hominis ATCC
           15826]
 gi|258518545|gb|EEV87404.1| ATP-dependent RNA helicase RhlB [Cardiobacterium hominis ATCC
           15826]
          Length = 444

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 134/423 (31%), Positives = 216/423 (51%), Gaps = 16/423 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L + P +  A+ D      TPIQ KT+PL L  HDV G+AQTGTGKTA+F++ +   
Sbjct: 11  FSSLPIHPAIQEALEDNRLTHTTPIQEKTLPLTLGGHDVMGLAQTGTGKTAAFLISLYHY 70

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF-EAQNKKL 119
                   + + P  ++L PTRELA Q+  + ++ G    L    + GG+     +N   
Sbjct: 71  LLTNPVHPKAKGPWAIVLAPTRELAVQIKKDADQIGAYTGLNSLAIYGGVSMEHQRNLLE 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D++I TPGRI+D + +  + + NIE+ V+DEADRM D+GFI  ++ +   +P   +
Sbjct: 131 NAPIDIIIGTPGRIIDLYKQKIIRLKNIEVCVLDEADRMFDLGFIDDVRYLLRQMPPAHE 190

Query: 180 TLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            L   FSATM  ++Q+++  +   P+ + + +  +TA+ I      T         +   
Sbjct: 191 RLNLLFSATMAQKVQELAYEYFNAPETVSIESGQATADNITQILYHTAKHEKTPLLIGLL 250

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +      + +  +  +         A+ G+I Q+ R KI+ +F+ G + 
Sbjct: 251 NRDKPARSMIFLNTKRDLERLSVVLEANGYPN---AALSGDIPQKKREKIIKDFQSGAVN 307

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IPDV HVFN+D+P  AE+Y+HRIGRT RAG  G A +   +E +  +
Sbjct: 308 IVVATDVAARGLHIPDVTHVFNYDLPQVAEDYVHRIGRTARAGASGTAISFACEEYVYSL 367

Query: 358 DAIEKLIEKKVDWLNGD---LSSLNPPLEKI-----DIAQHNHARKNNPIPQKSTGFDRR 409
             IE  I  K+     D   L+ + PP E+      +      AR  N  P+ +     R
Sbjct: 368 PEIEHYIHNKLPVFPLDEELLADVIPPSEEALRALNEQKAERLARNGNRQPRGNKPESHR 427

Query: 410 KKN 412
           ++N
Sbjct: 428 RRN 430


>gi|256830240|ref|YP_003158968.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579416|gb|ACU90552.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
           DSM 4028]
          Length = 530

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 134/368 (36%), Positives = 211/368 (57%), Gaps = 7/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
            F++LGLS   + A+   G+ +PTPIQIKTIP VL    D+   AQTGTGKTA+F LP+L
Sbjct: 3   TFSELGLSELSIQALSRKGFEEPTPIQIKTIPAVLTGDSDIVAQAQTGTGKTAAFGLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+     VR  + L+L PTRELA QVA+          + VA + GG   E Q + L+
Sbjct: 63  EMLDP---DVRTVQALVLAPTRELAIQVAEEVNSLRGGRTINVAPIYGGQSMEIQLRSLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR+LDH  RG L ++ I  L++DEAD ML+MGF+  +  I       ++T
Sbjct: 120 KGVSVVVGTPGRVLDHLRRGSLNLSGIRFLILDEADEMLNMGFLDDVLEIMEQTATEKRT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  E+ ++++ ++ + + I+  +   TA   +  +         +       ++
Sbjct: 180 MLFSATMPPEILRIAKKYMGDYQIIKAVSEQLTATQTDQIYFEVAMSDKFEALCRIIDME 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  G++F   K +   +   L ++G+    +HG++ Q  R K+L  FK+  + ++V
Sbjct: 240 PDFY---GLVFTRTKIDADAVSQRLMERGYEADTLHGDMSQSLREKMLIKFKKKLVTILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+ HV NFD+P+  E Y+HRIGRTGRAG+ G A T +   + + +  I
Sbjct: 297 ATDVAARGIDVHDLTHVINFDLPHDPEAYVHRIGRTGRAGKQGIAITFITPSEYRRLQFI 356

Query: 361 EKLIEKKV 368
            K     +
Sbjct: 357 SKHARTDI 364


>gi|300778725|ref|ZP_07088583.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
 gi|300504235|gb|EFK35375.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
          Length = 450

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 140/430 (32%), Positives = 215/430 (50%), Gaps = 8/430 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FAD  L  K++  + D    +PTPIQ K++  +L   DV GIAQTGTGKT +++LP+L
Sbjct: 4   LTFADFDLPVKILDVLADLELFEPTPIQEKSLKPILSGRDVMGIAQTGTGKTLAYLLPVL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +    +   P  L+L PTREL  QV +  EK  +N    V  + GG     Q     
Sbjct: 64  KTWKYS--KTGNPTVLVLVPTRELVVQVTEILEKLTENITARVIGVYGGKNINTQKLLFN 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGR++D      + +  ++ L+IDE D ML++GF P + +I  ++   RQ 
Sbjct: 122 DGCDILVGTPGRVMDLSIDNAISLKEVQKLIIDEFDEMLNLGFRPQLTHIFEMMKEKRQN 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+ + ++ + +  NP  I +    +  E IE          +K   L   L  
Sbjct: 182 ILFSATMTEAVDEMLDVYFANPVEISLAKSGTPLEKIEQIGYKVENFNTKINLLEYLLKN 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  K  I   N+K   +      E        IH N  Q  R+K +  F+   I+ ++
Sbjct: 242 DADMSKVLIFNNNKKHADLLFTKIDELFPEQFDVIHSNKSQNYRLKAMKRFENEEIRGLI 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+ ARGLDI ++ HV NF+ P+  E YIHRIGRTGRA + GKA   V K++   I  I
Sbjct: 302 TTDVMARGLDISNITHVINFETPDIPEQYIHRIGRTGRADKEGKALVFVTKKEEPLILDI 361

Query: 361 EKLIEKKVDWLN-GDLSSLNP---PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           E L++K++ +    +   +NP     EK ++   N A+    + +    F  +K   + +
Sbjct: 362 ELLMDKELKFNEFPEGVKINPNKIASEKDEVVMKNPAQVK--LNEGGGAFHEKKAKNTKE 419

Query: 417 KSHIPLKESE 426
               P K   
Sbjct: 420 NWGGPSKRKA 429


>gi|221123619|ref|XP_002156523.1| PREDICTED: PL10-related protein CnPL10 [Hydra magnipapillata]
          Length = 628

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 138/460 (30%), Positives = 226/460 (49%), Gaps = 22/460 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F +  L   ++  +  A Y KPTP+Q  +IP++  + D+   AQTG+GKTA+F++P+  
Sbjct: 172 TFDEANLGEIILTNISLAHYTKPTPVQKNSIPIIKAKRDLMACAQTGSGKTAAFLVPILS 231

Query: 60  ----------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                      + + +G  + + P  L+L PTRELA+Q+ D   K+     +   ++ GG
Sbjct: 232 RIFEEGPFENPSNVRQGGKKKQYPIALVLAPTRELASQIYDESRKFVYRSCIRPCVVYGG 291

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q + ++RG  +L+ TPGR++D   RGK+ +  I+ LV+DEADRMLDMGF P I+ 
Sbjct: 292 ADVSTQMRDIDRGCHLLVATPGRLVDMIQRGKVGLECIKFLVLDEADRMLDMGFEPQIRE 351

Query: 170 ITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I       R    QTL+FSAT   E+Q ++ +FL N   + V    ST+E I    V   
Sbjct: 352 IVEKCDMPRTGERQTLMFSATFPKEIQMLARDFLDNYIFLAVGRVGSTSENITQKVVWVE 411

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
               ++  L        D++    +   +  + +        + +   +IHG+  Q+ R 
Sbjct: 412 EHDKREFLLDLLNASGPDSLTLVFVETKRGADALEQFLFRCPENYHATSIHGDRHQKERE 471

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L++F+ GT  ++VA+ +AARGLDIP+V HV NFD+P+  E Y+HRIGRTGR G  G A
Sbjct: 472 QALASFRVGTTPILVATAVAARGLDIPNVKHVINFDMPSDIEEYVHRIGRTGRVGHTGLA 531

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ-KST 404
            +    ++      +  ++ +    +   L S+          QH  A+K     +    
Sbjct: 532 TSFFNDKNRNVARDLMDILAEAKQEIPSWLESMG-----YQAQQHQAAKKAQKTNRYGGG 586

Query: 405 GFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLG 444
           G     ++Y    +H P  +             N++D   
Sbjct: 587 GGGFGGRDYQPTYNHQPAYQQNNYRGTGGRAHSNNSDDWW 626


>gi|237841393|ref|XP_002369994.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211967658|gb|EEB02854.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
          Length = 1544

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 137/470 (29%), Positives = 221/470 (47%), Gaps = 18/470 (3%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
             F   GL  K+V  +   G  +P PIQ++ IP ++   DV  +A+TG+GKT ++ LP++ 
Sbjct: 974  TFFQCGLPDKIVKYLTLRGITEPFPIQMQAIPCLMCGRDVIAVAETGSGKTLAYGLPLIR 1033

Query: 62   ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   + +      +  ++ PTREL  Q+     +  K  +L      GG    +Q   +
Sbjct: 1034 HVLSVKQQDFRDGAIALVIAPTRELCNQIFKEINRCCKLVDLNAVACYGGAGIGSQLGAI 1093

Query: 120  ERGADVLICTPGRILD---HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +RG +V++ TPGR++D           +  +  +V+DEADRM D GF P + +I +    
Sbjct: 1094 KRGVEVIVGTPGRLIDILTMNGGRLTSLKRVTFIVLDEADRMFDFGFEPQVTSIIASSRP 1153

Query: 177  TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             RQT LFSAT    ++ ++   LQ P  I V     TA  ++        +  +K   L 
Sbjct: 1154 DRQTCLFSATFPPHIEALARRILQKPVEIIVGEKGRTAANVQQYV--EVMEEERKFFRLL 1211

Query: 237  QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            QLL       + IIF N++     L   L K G+    +HG  DQ  R   +  F++G  
Sbjct: 1212 QLLGEWQEHGSVIIFVNRQVEADELFTELLKYGYQAATLHGGQDQTDREFTIQEFQDGVR 1271

Query: 297  QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             L++A+ +AARGLD      V N   PN  E+Y+HRIGRTGRAGR G A+T + KED   
Sbjct: 1272 TLLIATSVAARGLDCKHCVLVINMTCPNHIEDYVHRIGRTGRAGRIGVAYTFLTKEDADK 1331

Query: 357  IDAIEKLIEKKVDWLNGDLSSLNPP-LEKIDIAQHNHARKNNPIPQK------STGFDRR 409
             D +EK + +    +   LS L+    ++ ++  H   +K             ++   R+
Sbjct: 1332 ADDLEKALTQSGQAVPQALSDLSAQYKQECNLGMHEKKKKGGGGFGGRGFSFSASEKSRQ 1391

Query: 410  KKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRG 459
            ++     K  + L++  +  +          D LG  G+      P+ RG
Sbjct: 1392 QRERQQAKKELGLEKDAEDEEFLDADLLAPEDVLGPSGD----REPEGRG 1437


>gi|195614644|gb|ACG29152.1| ATP-dependent RNA helicase DDX41 [Zea mays]
          Length = 618

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 134/406 (33%), Positives = 206/406 (50%), Gaps = 16/406 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF DL L   ++  + + G V+PTPIQ++ +P+VL   D+ GIA T +GKT  FVLP++ 
Sbjct: 174 DFRDLRLPEPMLRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTRSGKTLVFVLPLIM 233

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
                           P  +I+ P+RELA Q  D  E++           +   L IGG+
Sbjct: 234 VALQEESLMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLIPLKEAGYPEIRHLLCIGGV 293

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q   L++G  +++ TPGR+ D   + K+ ++N   L +DEADR++D+GF   I+ +
Sbjct: 294 DMRTQLDVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIKEV 353

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q     F +N     V      A       +       +
Sbjct: 354 FDHFKDQRQTLLFSATMPQKIQN----FAKNALVKPVTVNVGRAGAANLDVIQEVEYVKE 409

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
              ++  L   Q T    +IFC  K +V  +   L  +G    AIHG  DQ  R   + +
Sbjct: 410 DARIIYLLECLQKTPPPVLIFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERQNAIDS 469

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 470 FKTGRKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 529

Query: 351 KEDIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           K   +  +  ++ L+++    +   L+ LN PL+  +I       K
Sbjct: 530 KNQTETTLLDLKHLLKEAKQRIPPVLAELNGPLDDEEIIAKESGVK 575


>gi|319775175|ref|YP_004137663.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
 gi|329122905|ref|ZP_08251476.1| ATP-dependent RNA helicase RhlB [Haemophilus aegyptius ATCC 11116]
 gi|317449766|emb|CBY85973.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
 gi|327471836|gb|EGF17276.1| ATP-dependent RNA helicase RhlB [Haemophilus aegyptius ATCC 11116]
          Length = 415

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 125/379 (32%), Positives = 195/379 (51%), Gaps = 4/379 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSALPLHPIVRDALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +    +   PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 71  LLTHQDPNLKYPHPRALILVPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQAI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P  + 
Sbjct: 131 ECGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L    + T   +     F       E        +T        +   ++    L   L
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMND-PEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTL 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G + ++
Sbjct: 250 MEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDIL 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ A
Sbjct: 310 VATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPA 369

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+ I   +     +  +L
Sbjct: 370 IEEYIGHSIPVSQYETEAL 388


>gi|311244125|ref|XP_001925444.2| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Sus
           scrofa]
          Length = 643

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 137/378 (36%), Positives = 213/378 (56%), Gaps = 3/378 (0%)

Query: 2   DFAD-LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F D     P+V+  +  AG+ KPTPIQ +  P++LQ  D+ G+AQTGTGKT S+++P  
Sbjct: 239 KFEDAFQCYPEVMINIKKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGF 298

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++        P  L+L PTRELA QV     KY      +V +  GG   + Q K L 
Sbjct: 299 IHVDSQPVARNGPGMLVLTPTRELALQVEAECSKYSYKGLKSVCVY-GGGDRDGQIKDLL 357

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D++I TPGR+ D      + + +I  LV+DEAD+MLDMGF P I  I   +   RQT
Sbjct: 358 KGVDIIIATPGRLNDLQMNNFVYLKSISYLVLDEADKMLDMGFEPQIMKILLDIRPDRQT 417

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT    ++++++++L+ P  + V T    A +     +    +  K  + +Q  ++
Sbjct: 418 VMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIVTTEDEK-RSHIQTFIE 476

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S       IIF ++K    +L   L  +  SV ++HGN +Q  R + L NFK G +++++
Sbjct: 477 SMSPKDKVIIFVSRKAVADHLSSDLGIRHISVESLHGNREQGDRERALKNFKTGKVRILI 536

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLD+ DV HV+N+D P   E Y+HR+GRTGRAGR G + TL+ + D K    +
Sbjct: 537 ATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRSDWKIAGEL 596

Query: 361 EKLIEKKVDWLNGDLSSL 378
             ++E+    +  DL  +
Sbjct: 597 IHILERANQSIPEDLVEM 614


>gi|297678503|ref|XP_002817109.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Pongo
           abelii]
          Length = 648

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 142/412 (34%), Positives = 221/412 (53%), Gaps = 11/412 (2%)

Query: 2   DFAD-LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F D     P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT  +++P  
Sbjct: 242 TFDDAFQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGF 301

Query: 61  TILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L+   +   +   P  L+L PTRELA QV     KY     L    + GG   + Q +
Sbjct: 302 IHLDLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIE 360

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L +G D++I TPGR+ D      + + NI  LV+DEAD+MLDMGF P I  I   V   
Sbjct: 361 ELRKGVDIIIATPGRLNDLQMNNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPD 420

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++ SAT    + ++++++L+ P  + V T    A +     +    +  K   + Q 
Sbjct: 421 RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHM-QT 479

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            LQ+  +    I+F ++K    +L   L     S+ ++HG+ +QR R K L NFK G ++
Sbjct: 480 FLQNMSSTDKVIVFVSRKAVADHLSSDLILGNISIESLHGDREQRDREKALENFKTGKVR 539

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+DLA+RGLD+ DV HV+NFD P   E Y+HRIGRTGRAGR G + T + + D +  
Sbjct: 540 ILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVA 599

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             +  ++E+    +  +L S+           H   R+     ++  G  ++
Sbjct: 600 SELITILERANQSIPEELVSMAE-----RFKAHQQKREMERKMERPQGRPKK 646


>gi|221059063|ref|XP_002260177.1| RNA helicase [Plasmodium knowlesi strain H]
 gi|193810250|emb|CAQ41444.1| RNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 398

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 123/378 (32%), Positives = 200/378 (52%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL+ K++  +   G+ KP+ IQ + I  +L  +D  G AQ+GTGKTA+FV+   +
Sbjct: 24  TFDALGLNEKLLRGIYSYGFEKPSAIQQRGIKPILNGYDTIGQAQSGTGKTATFVI---S 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     V   + LIL PTRELA Q+       G    +     +GG        KL++
Sbjct: 81  SLQLINYDVVACQALILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDIDKLKQ 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D  ++  L ++ +++ ++DEAD ML  GF   I  +   +    Q  
Sbjct: 141 GVHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQVA 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+ +++  F+++PK I V     T E I   +VA   +  K   L       
Sbjct: 201 LFSATMPQEILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLCDL--YE 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   II+CN +K V  L   +  + F+V  +HG++DQ+ R  I+  F+ G+ +++V 
Sbjct: 259 TLTITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVT 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK--EDIKHIDA 359
           +DL ARG+D+  V  V N+D+P   + YIHRIGR+GR GR G A   V    ++   +  
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPTSPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDKLKK 378

Query: 360 IEKLIEKKVDWLNGDLSS 377
           IE     +++ +  +++ 
Sbjct: 379 IESYYSTQIEEMPLEVAD 396


>gi|321473370|gb|EFX84337.1| hypothetical protein DAPPUDRAFT_209410 [Daphnia pulex]
          Length = 592

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 153/468 (32%), Positives = 231/468 (49%), Gaps = 31/468 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ LS  ++ A+    +V PTPIQ  TIP+ L   DVCG A TGTGKTA+F+LP+L 
Sbjct: 17  SFHEMNLSRPLMKAIASMNFVHPTPIQSATIPVALLGRDVCGCAATGTGKTAAFMLPVLE 76

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L          R L+L PTREL  QV    ++  +  N+ + L IGG+  + Q K L  
Sbjct: 77  RLMYRPKVSATTRVLVLVPTRELGVQVYQVSKQLSQFTNIQIGLSIGGLDLKVQEKVLRG 136

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR++DH  N     +  I++L++DEADRMLD  FI  ++ I       RQT
Sbjct: 137 NPDVVIATPGRLIDHLRNTPSFSLEAIDVLILDEADRMLDEFFIEQVKEIIMQCGRKRQT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM++E++ ++   L  P ++ VN     A  +   FV     +      +   L 
Sbjct: 197 MLFSATMSNEVRDLAAVSLNKPIKVFVNNNRDVAFNLRQEFVRIRPNHEGDREAILCALV 256

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F   K     L   L   G  V  +HGN+ Q  R++ L  FKE  I ++V
Sbjct: 257 CRTFRNHCMVFVQTKMLCHRLHVQLGLLGIRVGELHGNLSQPQRLEALRKFKEEDIDILV 316

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D+AARGLDIP V  V N+ +P   E YIHR+GRT RAGR G + +L  + + K +  I
Sbjct: 317 STDVAARGLDIPGVQTVINYTMPPTIERYIHRVGRTARAGRSGVSVSLAGEGERKVVKEI 376

Query: 361 EKL-----------------IEKKVDWLNGDLSS----------LNPPLEKIDIAQHNHA 393
            K                   +KK+  ++ D+ S          L+    +I+ A+    
Sbjct: 377 VKRANNPVKSRLIPNEILEKYKKKLALIDPDVESIITEEKSESQLSAMENQINRAEKMVK 436

Query: 394 RKNNPIPQKSTGFDRRKKNYSSQKSHIPLKE---SEKISKLQQDIQEN 438
            K  P   K   F   ++    +       E   +E+  K ++ + EN
Sbjct: 437 VKGEPAAPKRQWFQTHQERLDEKDRFKLASEGGATEERPKPKKKLGEN 484


>gi|302508139|ref|XP_003016030.1| hypothetical protein ARB_05427 [Arthroderma benhamiae CBS 112371]
 gi|291179599|gb|EFE35385.1| hypothetical protein ARB_05427 [Arthroderma benhamiae CBS 112371]
          Length = 474

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 133/430 (30%), Positives = 230/430 (53%), Gaps = 9/430 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 50  TFKDLGIIDSLCDACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQ 109

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    L+L PTRELA Q+ + FE  G   ++  A+++GG+   +Q+  L +
Sbjct: 110 AL---MEKPQPYFGLVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSISLGK 166

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +    N     + N++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 167 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRT 226

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT++ +++ +    L NP R+ +++  +  +T+     +      K   +    + 
Sbjct: 227 YLFSATLSSKVESLQRASLSNPLRVSISS--NKYQTVSTLLQSYIFIPHKYKDIYLVHIL 284

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   +  IIF         L   L   GF    +HG + Q +R+  L  F+ G+  ++V
Sbjct: 285 NEFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILV 344

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V NFD+P+ ++ YIHR+GRT RAG+ G+A ++V + +++    I
Sbjct: 345 ATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQRI 404

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD---RRKKNYSSQK 417
           E  + K++     +   +    +++  AQ     +   + +K        R ++   S++
Sbjct: 405 EAALGKQLPEHKTEKEEVMVLSDRVGDAQRLAVTEMKDLHEKRGTKGATLRGRRKGDSKR 464

Query: 418 SHIPLKESEK 427
               +   E+
Sbjct: 465 GRDDMDREER 474


>gi|327307140|ref|XP_003238261.1| ATP-dependent rRNA helicase RRP3 [Trichophyton rubrum CBS 118892]
 gi|326458517|gb|EGD83970.1| ATP-dependent rRNA helicase RRP3 [Trichophyton rubrum CBS 118892]
          Length = 474

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 133/430 (30%), Positives = 231/430 (53%), Gaps = 9/430 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 50  TFKDLGIIDSLCDACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQ 109

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    L+L PTRELA Q+++ FE  G   ++  A+++GG+   +Q+  L +
Sbjct: 110 AL---MEKPQPYFGLVLAPTRELAVQISEAFEALGSLISVRCAVIVGGMDMISQSISLGK 166

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +    N     + N++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 167 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRT 226

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT++ +++ +    L NP R+ +++  +  +T+     +      K   +    + 
Sbjct: 227 YLFSATLSSKVESLQRASLSNPLRVSISS--NKYQTVSTLLQSYIFIPHKYKDIYLVHIL 284

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   +  IIF         L   L   GF    +HG + Q +R+  L  F+ G+  ++V
Sbjct: 285 NEFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILV 344

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V NFD+P+ ++ YIHR+GRT RAG+ G+A ++V + +++    I
Sbjct: 345 ATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQRI 404

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD---RRKKNYSSQK 417
           E  + K++     +   +    +++  AQ     +   + +K        R ++   S++
Sbjct: 405 EAALGKQLPEHKTEKEEVMVLSDRVGDAQRLAVTEMKDLHEKRGTKGATLRGRRKGDSKR 464

Query: 418 SHIPLKESEK 427
               +   E+
Sbjct: 465 GRDDMDREER 474


>gi|224060117|ref|XP_002300045.1| predicted protein [Populus trichocarpa]
 gi|222847303|gb|EEE84850.1| predicted protein [Populus trichocarpa]
          Length = 791

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 205/378 (54%), Gaps = 2/378 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   G   +++  VL+AG+  PTPIQ ++ P+ LQ  D+  +A+TG+GKT  +++P   
Sbjct: 166 SFETTGFPSEILKEVLNAGFSAPTPIQAQSWPIALQSRDIVAVAKTGSGKTLGYLIPGFI 225

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L++     R  P  L+L PTRELA Q+     K+GK+   +   L GG P   Q K+L+
Sbjct: 226 HLKRSCNDPRLGPTVLVLSPTRELATQIQVEAVKFGKSSRFSCTCLYGGAPKGPQLKELD 285

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGAD+++ TPGR+ D     ++ ++ +  LV+DEADRMLDMGF P I+ I   VP  RQT
Sbjct: 286 RGADIVVATPGRLNDILEMRRVSLSQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 345

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+++AT   E++K++ + L NP ++ +                      +K     + + 
Sbjct: 346 LMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQYVELLAPLEK-HRRLEQIL 404

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + II     K + +       + F   AIHG+  Q  R  +LS F+ G   ++V
Sbjct: 405 RSQESGSKIIIFCSTKKMCDQLSRNLTRQFGAAAIHGDKSQSERDYVLSQFRTGRSPILV 464

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G A+T    +D KH   +
Sbjct: 465 ATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDAKHASDL 524

Query: 361 EKLIEKKVDWLNGDLSSL 378
            K++E     +  ++  +
Sbjct: 525 IKVLEGANQQVPPEIRDM 542


>gi|221133360|ref|ZP_03559665.1| ATP-dependent RNA helicase SrmB [Glaciecola sp. HTCC2999]
          Length = 422

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 192/386 (49%), Gaps = 5/386 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L   +  A+ D G+  PT IQ   IP  ++  D+   A TGTGKTA+F+LP    
Sbjct: 2   FEQLELHADLCNALGDMGFTAPTSIQSSVIPKAMEGRDILASAPTGTGKTAAFLLPAAQF 61

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L           R LIL PTRELA Q  ++  +  ++ N+   ++ GGI +      L +
Sbjct: 62  LLDFPREYHGATRILILSPTRELAIQTYEHALEITQHTNIVCGVITGGINYGTDRDTLAK 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+L+ TPGR+ +H  +      +IE++++DEADRMLDMGF   +  I S   + +Q++
Sbjct: 122 NLDILVATPGRLFEHIEKESFDCRDIEVMILDEADRMLDMGFRSIVNQIASEARWRKQSM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+      +++         E  T   + +         +                
Sbjct: 182 LFSATLEGP--GIAQFSKDLLVNPESITVDPSRKEKAKIHQWYHLADDASHKYQLLKHIL 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  ++ I+F   ++ +  L   L      VC + G + Q  R + +S FK G +++++A
Sbjct: 240 SEQAESAIVFVKTRERLQQLKDRLASDDIDVCWLQGEMPQDKRNQAMSRFKNGEVKILLA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ D+ HV NFD+P  ++ Y+HRIGRTGRAG  G A ++V   D   +  I 
Sbjct: 300 TDVAARGIDVDDISHVINFDMPRTSDVYLHRIGRTGRAGAKGTAISIVEAHDFAMLGRIA 359

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDI 387
           + I++ +      +  L P  +   I
Sbjct: 360 RYIKEVIK--PRVIDELRPKHKAPTI 383


>gi|330813838|ref|YP_004358077.1| cold-shock DEAD-box protein A [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486933|gb|AEA81338.1| cold-shock DEAD-box protein A [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 558

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 155/469 (33%), Positives = 254/469 (54%), Gaps = 21/469 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L L+  +  +++   +  PTPIQIK+IP++L++ D+   AQTGTGKTA+F +PM+ 
Sbjct: 3   NFQELNLNKNLNASLVKMKFDTPTPIQIKSIPIILEQKDILASAQTGTGKTAAFCIPMIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEK-YGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++   +      R +IL PTRELA QV D  EK   +   +    L+GG P   Q ++L+
Sbjct: 63  MIATKKIN----RAIILVPTRELAKQVNDVIEKLLFQQSVIKSVCLVGGEPMNKQLRRLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ DH  R  LL+N +++L++DE DRMLDMGF   I  I   +P  +QT
Sbjct: 119 TKPQIVVGTPGRVNDHLKRKSLLLNKVDLLILDEMDRMLDMGFSIQIDEIIKFLPKQKQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+   ++++S+ +L N +R       + A               ++      + Q
Sbjct: 179 LMFSATIAPSIERLSKKYLNNAER----VSVAAANATLITIKQEVINLRQEDKYNTLVEQ 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F   K N   L  +LEK+GF   ++HGN+ Q  R ++++ F+   I ++V
Sbjct: 235 VKTKHGSTLVFVKTKHNAKKLAKNLEKEGFESDSLHGNLRQNKRNQVIAKFRANKIHVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP + HV NFD+P +AE++IHR+GRTGRAG  G A++ V   D +    I
Sbjct: 295 ATDIAARGLDIPHIEHVVNFDLPQQAEDFIHRMGRTGRAGASGTAWSFVTPSDKRKWHEI 354

Query: 361 EKLIE---------KKVDWLNGDLSSLNPPLE--KIDIAQHNHARKNNPIPQKSTGFDRR 409
           EK++          K+      D S   P       D  + +   K++   +K T F R 
Sbjct: 355 EKILNPGLKSSSDSKRSGGRRDDYSKKRPFKRGGPRDGFRSDKGGKSSFRDKKKTSFRRD 414

Query: 410 KKNYSS-QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
            K  SS ++S      S K ++ + + +++   + G+    P+   PK 
Sbjct: 415 DKKESSFKRSDKKDFSSRKPAEFRSEGKKSKPKNAGYGRKTPSSDRPKR 463


>gi|145255454|ref|XP_001398969.1| ATP-dependent rRNA helicase RRP3 [Aspergillus niger CBS 513.88]
 gi|143462251|sp|A2RB17|RRP3_ASPNC RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|134084560|emb|CAK43313.1| unnamed protein product [Aspergillus niger]
          Length = 467

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 140/426 (32%), Positives = 226/426 (53%), Gaps = 9/426 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+  ++  A    GY  PTPIQ ++IPL L+  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 49  TFKELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQ 108

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    L+L PTRELA Q++ +FE  G +  +   +++GG+   +Q+  L +
Sbjct: 109 AL---MEKPQPFFGLVLAPTRELAYQISKSFESLGASMGVRSCVIVGGMDMVSQSISLGK 165

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +    N     + N++ LV+DEADR+LDM F P +  I  ++P  R+T
Sbjct: 166 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRT 225

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L NP R+ V+T  S  +T+     +      K   L    L 
Sbjct: 226 FLFSATMSSKVESLQRASLSNPLRVSVST--SKYQTVSTLLQSYLFIPQKHKDLYLVYLL 283

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ IIF         L   L   GF    +HG + Q +R+  L  F+  +  ++V
Sbjct: 284 NEFAGQSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALGKFRARSRNILV 343

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V NFD+P  + +Y+HR+GRT RAG+ G A + VA+ D++    I
Sbjct: 344 ATDVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQYDVEVWLRI 403

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  + KK+   +     +    E +  AQ           +K      R K +  ++S  
Sbjct: 404 EGALGKKLKEYDCPKDEVMVLGENVAEAQRQAIMDMKDYNEKKGS---RGKKFGGKRSRD 460

Query: 421 PLKESE 426
            + + E
Sbjct: 461 EMDQEE 466


>gi|291165179|gb|ADD81194.1| vasa [Auxis thazard]
          Length = 627

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 127/388 (32%), Positives = 204/388 (52%), Gaps = 13/388 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 194 MTFDEAALCESLRKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 253

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + ++ P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 254 QQLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGH 313

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
           Q +++ RG +V+  TPGR+LD   RGK+ +  +  LV+DEADRMLDMGF P ++      
Sbjct: 314 QIREISRGCNVVCGTPGRLLDMIGRGKVGLTKLRYLVLDEADRMLDMGFEPDMRRLVGSP 373

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++Q+++ +FL+             A +          ++SK
Sbjct: 374 GMPSKENRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSK 433

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +       L      +  ++F   K+    +   L ++     +IHG+ +QR R + L++
Sbjct: 434 RE--QLLDLLKTTGSERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALAD 491

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDIPDV HV NFD+PN  + Y+HRIGRTGR G  G+A +   
Sbjct: 492 FRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYD 551

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSS 377
            + D +   ++  ++ K    +   L  
Sbjct: 552 PDADGQLARSLITVLSKAQQEVPSWLEE 579


>gi|295680824|ref|YP_003609398.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
 gi|295440719|gb|ADG19887.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 481

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 168/478 (35%), Positives = 247/478 (51%), Gaps = 25/478 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  V D  Y  PTP+Q K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIDPLLRNVQDLNYQIPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +    V   R    +L PTRELA QV  +F  YG+  +L      GG+    Q  K
Sbjct: 61  QRLVQRGPAVSSNRARVLVLVPTRELAEQVLQSFIAYGRGLDLRFLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT TD+++ ++ N L+ P  I V+ P++TA  I            K    L   
Sbjct: 181 QTLLFSATFTDDIRAMAANILRGPVNISVSPPNATASRI---KQWVVPVDKKNKPDLFMH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +++  ++ ++F   +  V  L   L++ G++V  IHG+  Q +R++ L  FK G +Q+
Sbjct: 238 LVAENGWQHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKAGEVQM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEKKVDWL--NGDLSSLNPPL-------------EKIDIAQHNHARKNNPIPQK- 402
           AIE LI + +      G  +    P               K     H       P+ +K 
Sbjct: 358 AIEALIRQTLPRKEEPGFEAEHRVPQTSATGQIIKKPKKPKAPKVPHAAPGAMRPLGKKT 417

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
           ++     K+  ++Q++    K +         +Q+  +   G     PA    K  GK
Sbjct: 418 ASQRGENKRKPAAQRAVAAGKGARLSGGNSMSVQKPRSKPAGK----PAAGSRKPAGK 471


>gi|257457389|ref|ZP_05622560.1| DEAD/DEAH box helicase [Treponema vincentii ATCC 35580]
 gi|257445311|gb|EEV20383.1| DEAD/DEAH box helicase [Treponema vincentii ATCC 35580]
          Length = 646

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 134/397 (33%), Positives = 214/397 (53%), Gaps = 9/397 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           + F DLGL   V+ AV   G+ +PTPIQ+  IP +L    +V   A+TGTGKTA++ LP+
Sbjct: 18  ISFRDLGLDESVLNAVAAKGFEEPTPIQVLAIPRLLNGDANVIAKARTGTGKTAAYGLPL 77

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  L + R +   PR L+L PTRELA QVA   E + +  +  +  + GG     Q + L
Sbjct: 78  VQELREPREK---PRALVLVPTRELALQVASEIESFKEGTHPRITTVYGGASIVEQLRNL 134

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++  TPGR++DH  RG L +++IE  ++DEAD ML+MGFI  I+ I        +
Sbjct: 135 KRGCEIVAGTPGRVIDHLERGSLNLDSIEYFILDEADEMLNMGFIEDIETIFKKANPDSR 194

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  ++ K++ +F+   + +E           E  F     +   +  +     
Sbjct: 195 VLMFSATMPKQILKIAADFMGEYEIVEEEASEEPLPLTEQFFWMVREEDKSEALVRLIDT 254

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   G++FC  K +   +   L+++ +   A+HG+I Q  R KILS F+ G  +++
Sbjct: 255 AENFY---GLVFCQTKVDADAVAKELDERHYEAAALHGDIPQGQREKILSRFRAGKTRIL 311

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV N+ +P     Y HRIGRTGRAG  G A + +   + + ID 
Sbjct: 312 VATDVAARGIDIEGITHVVNYSIPYDGPTYTHRIGRTGRAGAKGTAVSFIRPNERRRIDY 371

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
           + +    + + L G + S+   L +      +  R+ 
Sbjct: 372 LRRH--ARGELLEGKIPSIEKVLAQKQDRLFSDLRRQ 406


>gi|226468128|emb|CAX76291.1| Eukaryotic initiation factor 4A [Schistosoma japonicum]
          Length = 392

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 112/376 (29%), Positives = 194/376 (51%), Gaps = 5/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  +++  +   GY KP+ IQ + I   ++  DV   AQ+GTGKTA+F + +L  
Sbjct: 21  FEKLGLKSELLRGIYSFGYEKPSAIQQRAIKPSVEGRDVIAQAQSGTGKTATFAISILQR 80

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++         + L+L PTRELA Q+    ++ G   N+     IGG         L++G
Sbjct: 81  IDVS---SNTCQALVLVPTRELARQIQTVVQRIGSYLNVRCHTCIGGTRMSEDVACLQQG 137

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR++D  NR  L  +NI+I V+DEAD+ML  GF P I+ I   +P + Q +L
Sbjct: 138 QHVVVGTPGRVIDMMNRSILATSNIKIFVLDEADQMLGRGFEPQIKEIYKYLPESAQIML 197

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++  ++   +Q+P +I +     T + I+  ++    +  K   L+       
Sbjct: 198 LSATMPKQMLTIARGIMQDPVQILIKKEELTLDGIKQFYINVSKEEYKLETLMDL--YKV 255

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
             +   +IF N  +    L   L  + F V  I+ +++Q  R +++  ++ G  ++++++
Sbjct: 256 MNLSQVVIFVNSVRKASYLSEELANRNFQVSCINSDMEQEKRDRVMEEYRSGRSRILLST 315

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ ARG+D+  V  V N+D+P   E YIHRI R GR GR G A   +   + + +  ++ 
Sbjct: 316 DVLARGIDVQQVSLVVNYDLPGDRETYIHRICRGGRFGRKGTAINFITDTEKEALRDLQT 375

Query: 363 LIEKKVDWLNGDLSSL 378
               ++  +  D+   
Sbjct: 376 YYNTEILEMPDDIVDF 391


>gi|19075356|ref|NP_587856.1| ATP-dependent RNA helicase Prp11 [Schizosaccharomyces pombe 972h-]
 gi|48474674|sp|Q9P7C7|PRP11_SCHPO RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp11
 gi|7380876|emb|CAB85446.1| ATP-dependent RNA helicase Prp11 [Schizosaccharomyces pombe]
          Length = 1014

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 129/432 (29%), Positives = 211/432 (48%), Gaps = 7/432 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GLS + +  +   GY KPT IQ + IP +    DV G+A+TG+GKT +F+LPM  
Sbjct: 419 SWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFR 478

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++  R       P  +I+ PTRELA Q+    + + K  N+      GG P + Q   L
Sbjct: 479 HIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADL 538

Query: 120 ERGADVLICTPGRILD---HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D           ++    LV+DEADRM D+GF P +  I + +  
Sbjct: 539 KRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRP 598

Query: 177 TRQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            RQT+LFSAT    ++    +   +  +          +E  +   V        +   L
Sbjct: 599 DRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLEL 658

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L +       ++F +++++   L   L K+G++  +IHG  DQ  R   +S++K G 
Sbjct: 659 LGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGV 718

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +++A+ + ARGLD+  +  V N+D PN  E+Y+HR+GRTGRAG  G A T +  E  K
Sbjct: 719 FDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEK 778

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPP-LEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +   I K ++     +  +L +L    LEK+   +   A         S   + R     
Sbjct: 779 YAVDIAKALKMSKQPVPKELQTLASQFLEKVKAGKEKAAGGGFGGKGLSRLDETRNAERK 838

Query: 415 SQKSHIPLKESE 426
            Q+      E +
Sbjct: 839 MQRKAYGEDEED 850


>gi|86145735|ref|ZP_01064064.1| ATP-dependent RNA helicase [Vibrio sp. MED222]
 gi|218676917|ref|YP_002395736.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|85836434|gb|EAQ54563.1| ATP-dependent RNA helicase [Vibrio sp. MED222]
 gi|218325185|emb|CAV27095.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 399

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 157/400 (39%), Positives = 233/400 (58%), Gaps = 14/400 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V AV   GY KPT IQ K IP+VL   ++   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSSPIVKAVAKQGYEKPTSIQEKAIPIVLSGKNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L KG   R +  R +IL PTRELA QV  N  KY K  NLT   + GG+ ++ Q  +L
Sbjct: 61  EMLSKGETQRKKRIRAVILTPTRELAIQVEQNITKYAKFLNLTSLAMYGGVSYQHQKDRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR++D + +  +  + +E+LV+DEADRMLDMGFI  I  I + +P   Q
Sbjct: 121 IEGVDILVATPGRLIDMYGQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIARLPQNIQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++  ++ ++++ +   + I   + + T  +  +           + + L   +
Sbjct: 181 NLLFSATLSTPVRALAKSAISEAEEI---SIAKTDASKANIEQWLVTVDKDRKSALLSHM 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       +IF   K     L   LEK+G    A H    Q  R KIL++FK+G ++ +
Sbjct: 238 ITDGEWDQALIFIETKHGAAKLVAQLEKRGIEAEAFHSGRSQAIREKILADFKKGRLKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI ++  V N+D+P  A++Y+HRIGRTGRA   G+A + ++K++ K++  
Sbjct: 298 VATGVAARGIDIDNLSRVVNYDIPFPADDYVHRIGRTGRADASGEAISFLSKDNFKNLCI 357

Query: 360 IEK----LIEKKV-----DWLNGDLSSLN-PPLEKIDIAQ 389
           IEK    LIE++V           +S LN  P +K D+ Q
Sbjct: 358 IEKRLGHLIERRVVEGFEPRKEVPISVLNFVPKKKRDLQQ 397


>gi|6137207|gb|AAF04377.1|AF188678_1 P72 DEAD box protein [Pisum sativum]
          Length = 716

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 116/379 (30%), Positives = 189/379 (49%), Gaps = 2/379 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA  G   ++   V +AG+  PTPIQ ++ P+ LQ  D+  IA+TG+GKT  ++LP  
Sbjct: 152 MSFASSGFPSEIHKEVQNAGFSAPTPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLLPAF 211

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
                     +   T+++   +   A    +        +      + G  P   Q + +
Sbjct: 212 ITSSALIITPKWGPTILVLHQQGELATQIQDEAVKFSKTSRIACTCLYGGAPKGPQLRDI 271

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGAD+++ TPGR+ D     ++ ++ +  LV+DEADRMLDMGF P I+ I + VP  RQ
Sbjct: 272 DRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNGVPARRQ 331

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+F+AT   E++K++ + L NP ++ +                    +  +     + +
Sbjct: 332 TLMFTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHIEVLAH-MEKQRRLESI 390

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + II     K + +       + F   AI G+  Q  R  +L+ F+ G   ++
Sbjct: 391 LQSQDQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIRGDKSQADRDHVLNQFRSGRTPVL 450

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+  V N+  P   E+Y+HRIGRTGRAG  G A+T    +D KH   
Sbjct: 451 VATDVAARGLDVKDIRVVVNYTFPTGVEDYLHRIGRTGRAGATGIAYTFFGDQDAKHASD 510

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E     +  +L  L
Sbjct: 511 LIKILEGANQKVPPELREL 529


>gi|260776996|ref|ZP_05885890.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606662|gb|EEX32936.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 449

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 191/386 (49%), Gaps = 6/386 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL  +++  +    + + T IQ + IP+ +   D+   ++TG+GKT +FVLPML
Sbjct: 7   LHFKDLGLDNRLLKNLKHFDFKQATEIQQQAIPVSIAGKDLLASSKTGSGKTLAFVLPML 66

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      + PR +IL PTRELA QV           +    L++GG  F  Q K L
Sbjct: 67  HKSLKNKAFSAKDPRGVILAPTRELAKQVYGELRSMLGGLSYDATLIVGGENFNDQVKAL 126

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH +   L ++ +E L++DEADRMLD+GF P ++ I +     R+
Sbjct: 127 RRYPKFIVATPGRLADHLDHRSLYLDGLETLILDEADRMLDLGFAPELRRIHNAAKHRRR 186

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +     F        +    S  E  +         +      + + +
Sbjct: 187 QTLMFSATLDHAEVNEIAFEMLDAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILERI 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   K  IIF   + +   L   L ++     A+ GN++Q  R  I+S F+    +++
Sbjct: 247 LEEAEYKQLIIFTATRVDTERLTDKLNEKKLKAIALSGNLNQTQRNTIMSQFERAVFKIL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDI +V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D      
Sbjct: 307 VTTDVASRGLDIANVTHVVNFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKR 366

Query: 360 IEKLIEK-----KVDWLNGDLSSLNP 380
           +E  +++     +++ L G    + P
Sbjct: 367 VEAYLQQDLTFSELEGLKGKFKGIKP 392


>gi|268573988|ref|XP_002641971.1| Hypothetical protein CBG16678 [Caenorhabditis briggsae]
          Length = 972

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 140/463 (30%), Positives = 220/463 (47%), Gaps = 14/463 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA  GL+ K++  +    Y KPT IQ + IP ++   DV GIA+TG+GKT +F+LPM  
Sbjct: 308 TFAQCGLNLKMMNVLKKLDYSKPTSIQAQAIPAIMSGRDVIGIAKTGSGKTLAFLLPMFR 367

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P  +IL PTRELA Q      K+ K   L VA   GG+    Q   L
Sbjct: 368 HILDQPELEEGDGPIAVILAPTRELAMQTYKEANKFAKVLGLRVACTYGGVGISEQIADL 427

Query: 120 ERGADVLICTPGRILD---HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  LV+DEADRM D GF P I  + + +  
Sbjct: 428 KRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRP 487

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +QT+LFSAT    ++ ++   L  P  I V   S     +    V           L  
Sbjct: 488 DKQTVLFSATFPRHMEALARKVLDKPVEILVGGKSVVCSDVTQNAVICEEHQKLLKLLEL 547

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                 +   + +    Q+K    +   ++    SV  +HG IDQ  R   +++FK G I
Sbjct: 548 L-GMYYEQGCSIVFVDKQEKADDIVDQLMKTGYNSVAPLHGGIDQHDRDSSIADFKTGVI 606

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIK 355
           +++VA+ +AARGLD+ ++  V N+D PN  E+Y+HR+GRTGRAGR G A+T V  E   K
Sbjct: 607 KVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEK 666

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
               I +  E        DL ++    E+         ++ +       GF+     Y  
Sbjct: 667 MAGEICRAFETAGVKPPADLKAM---FERFKKEMEAEGKQVH---LGGKGFEGHGYKYDE 720

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
            ++     + +K+++L   ++    D       + + +  K R
Sbjct: 721 GEAEADANK-KKMARLVHGMEAGGEDEDDLDEQLSSMIKTKRR 762


>gi|120599366|ref|YP_963940.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|146292637|ref|YP_001183061.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|120559459|gb|ABM25386.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145564327|gb|ABP75262.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 449

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 132/432 (30%), Positives = 206/432 (47%), Gaps = 8/432 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F D  L  +++ ++   G   PT IQ +T+P+ L   D+   ++TG+GKT +F+LP +
Sbjct: 1   MQFTDFSLDQRLLQSLKHMGITAPTAIQEQTLPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++       R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRVISTRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +    ++ TPGRI DH  +  L +N +E+L++DEADRMLD+GF P ++ I       R+
Sbjct: 121 AKEPHFIVATPGRIADHLEQKHLFLNGLELLILDEADRMLDLGFAPQLKTINEAADHKRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +              V   +S +E  +         +      L   L
Sbjct: 181 QTLMFSATLDHSEINDIAATLLKNPAHVAIDASHSEHNDIHQRIFLCDHLDHKEALLTRL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +T K  I+F   + +   L   L  QGF+  A+ G++ Q +R +I+  F  G  Q++
Sbjct: 241 LQDETHKQVIVFTATRPDTERLAAKLSTQGFATAALSGDLKQAARNQIMDQFARGQQQIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +   
Sbjct: 301 VTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNFKK 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           ++  + K  +       S+ P LE    +      K  PI + +       K  +     
Sbjct: 361 VQIFLRKTFEI------SIIPGLEA-KFSGLKEQSKQTPIKRVAKTSTSAGKTKAKAVKA 413

Query: 420 IPLKESEKISKL 431
            P ++   I+ +
Sbjct: 414 PPSRDKRFITGV 425


>gi|326911793|ref|XP_003202240.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
           [Meleagris gallopavo]
          Length = 447

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 127/407 (31%), Positives = 210/407 (51%), Gaps = 12/407 (2%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           G++  +  A    G+  PT IQ++ IP+ LQ  D+ G+A+TG+GKT +F LP+L  L   
Sbjct: 25  GVTDVLCEACDQLGWKIPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQALLDA 84

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLERGADV 125
             R+     L+L PTRELA Q+++ FE  G +  +  A+++G            ++   +
Sbjct: 85  PQRLFA---LVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPHII 141

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           +      +    N     +  ++ LV+DEADR+L+M F   +  I  ++P  R+T LFSA
Sbjct: 142 IATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSA 201

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           TMT ++QK+    L+NP +  V++   T E ++          SK        + ++   
Sbjct: 202 TMTKQVQKLQRAALKNPVKCAVSSKYQTVEKLQQ---YYIFIPSKFKDSYLVYILNELAG 258

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
            + ++FC+   N       L   GF+   +HG + Q  R+  L+ FK     +++A+D+A
Sbjct: 259 NSFMVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLATDVA 318

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GK+ T V + D++    IE LI 
Sbjct: 319 SRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLIG 378

Query: 366 KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           KK+         +    E++  AQ     +   +  +  G  +R +N
Sbjct: 379 KKLPAFPMQEEEVMMLQERVAEAQ-----RFARMELREQGEKKRSRN 420


>gi|170758353|ref|YP_001787402.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169405342|gb|ACA53753.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 376

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 144/370 (38%), Positives = 216/370 (58%), Gaps = 6/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS  ++  + +   ++PTPIQ ++I L+   +DV   AQTGTGKT +F+LPM 
Sbjct: 2   IKFEELGLSDSIIDILKNQRIIEPTPIQEESIMLIKNGNDVIAEAQTGTGKTLAFLLPMF 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      +   + LI+ PTRELA Q+ +   K  K  +L +    GG    +Q KKL+
Sbjct: 62  ENISPN---INAIQGLIITPTRELAIQITEEAMKLKKAKDLNILAAYGGKDIGSQIKKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH NR  L   +++ LV+DEAD ML MGF   +++I    P  RQT
Sbjct: 119 NNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNEVRSIIENTPRKRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++   +++PK I +     T + I            ++       + 
Sbjct: 179 LCFSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNI---KQVLIETTDRRKQEDLCKIL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++     IIFC  K+ V NL   L K+G++   +HG++ Q  R +I+ +FK   IQ ++
Sbjct: 236 NEENPFMAIIFCRTKRRVDNLEEDLYKKGYNCEKLHGSMTQPKRERIMRSFKNLEIQYLI 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HVFN+D+P  +E+YIHRIGRTGRAG  G  F  VA +D + +D I
Sbjct: 296 ATDVAARGLDITGVTHVFNYDIPENSESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLDMI 355

Query: 361 EKLIEKKVDW 370
           EK I+ K+  
Sbjct: 356 EKEIKFKIPR 365


>gi|251796178|ref|YP_003010909.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
 gi|247543804|gb|ACT00823.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
          Length = 578

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 146/410 (35%), Positives = 221/410 (53%), Gaps = 20/410 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  +G+ P++   +   G   PTP+Q K IP++L   DV   AQTGTGKT +F LP+L 
Sbjct: 4   EFISMGIIPELTDVLQSNGITSPTPVQKKAIPVLLSGQDVIAQAQTGTGKTIAFTLPILQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  + +V+    LIL PTRELA Q+    +K        V    GG   +AQ +KL  
Sbjct: 64  RIDIDKEQVQ---ALILTPTRELAIQITSELKKLAAAVGAKVLAAYGGQDVDAQIRKLNN 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++DH  R  + +  +++LV+DEAD+ML MGF+P +QNI    P  RQT+
Sbjct: 121 SPHIVVATPGRLIDHMRRETINLGKLKMLVLDEADQMLHMGFLPEVQNIVDQTPRARQTM 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D++++++EN+++ P  I++ + + T + I            +        +  
Sbjct: 181 LFSATMPDQIKRLAENYMKTPVDIKIQSANVTLDNI---KQLVIETTDRGRQKALISMIE 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  +IFC  K     L   L+  GF    +HG++ Q  R +++  F++  +Q++VA
Sbjct: 238 TQRPYLAVIFCRTKVRAKKLNKDLQDLGFESDELHGDLTQAKREQVMKRFRDAKLQILVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HVFNFDVP  +E YIHRIGRTGRAG+ G A T+ +  D   +  IE
Sbjct: 298 TDVAARGLDVEGVTHVFNFDVPTDSEIYIHRIGRTGRAGQRGTAITIASPYDRAAVAHIE 357

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           +              S+N  LE+  I       KN      S G    KK
Sbjct: 358 R--------------SINAILERRTIEADGTIVKNTAPRSSSEGKSYDKK 393


>gi|158522360|ref|YP_001530230.1| DEAD/DEAH box helicase domain-containing protein [Desulfococcus
           oleovorans Hxd3]
 gi|158511186|gb|ABW68153.1| DEAD/DEAH box helicase domain protein [Desulfococcus oleovorans
           Hxd3]
          Length = 425

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 156/438 (35%), Positives = 233/438 (53%), Gaps = 16/438 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F   G +P+V   + +AGY  PTPIQ++ I  V++  DV G+AQTGTGKTA+FVLP+L
Sbjct: 1   MNFEAFGFNPQVAAGIKEAGYAVPTPIQVQAIAPVMENRDVMGMAQTGTGKTAAFVLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L KG  +    R LIL PTRELA Q        G+   L  A + GG+    Q +KL+
Sbjct: 61  HRLMKG--QKGGIRALILAPTRELAEQTHQAIGVLGRKTGLKSATVYGGVGITPQIQKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V+ C   R+LDH  R    ++ +E+LVIDEAD++ DMGF P I+ I + +P  RQT
Sbjct: 119 KVDIVVACPG-RLLDHIGRRTANLSKLEVLVIDEADQLFDMGFFPDIKKILTHLPKQRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++K++ + LQNP  ++V   +         +       +     L +   
Sbjct: 178 LLFSATMPAEIRKLAADILQNPATVQVGNEAPADTVSHALYPVAQHLKTAFLLDLLK--- 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q   ++ ++F   K    NL   L   GF   ++ GN+ Q  R   L  F++GT Q++V
Sbjct: 235 -QTQARSVLVFTRTKHRAKNLDQKLAGAGFRSTSLQGNLSQVKRQAALDGFRKGTFQILV 293

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV N+DVP+  E YIHRIGRTGRA   G+AFT +  ED   + AI
Sbjct: 294 ATDIAARGIDVTRVSHVINYDVPSTPEAYIHRIGRTGRATCTGEAFTFITGEDRNMVRAI 353

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
            +L+  +++            LE  +      A   +   +  +     +K  + Q S  
Sbjct: 354 NRLLGSEIE---------QRTLESFNYKAAAPAFTGSAPARTDSAHRPARKKPARQSSPR 404

Query: 421 PLKESEKISKLQQDIQEN 438
           P    +  S  ++  + +
Sbjct: 405 PKTFEKSGSHGKKPARRH 422


>gi|309774568|ref|ZP_07669594.1| ATP-dependent RNA helicase, DEAD/DEAH family [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308917683|gb|EFP63397.1| ATP-dependent RNA helicase, DEAD/DEAH family [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 585

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 134/371 (36%), Positives = 213/371 (57%), Gaps = 10/371 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L +S +V+ AV + GY   T IQ ++IPL+++  DV G + TGTGKTA+F +P + 
Sbjct: 3   TFNELQISSEVMKAVEEMGYENATDIQAQSIPLIMEGKDVLGRSNTGTGKTAAFGIPAIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            + +G    R P  LI+ PTREL  QVA    K+ K    + +  + GG P + Q + L+
Sbjct: 63  KVCQG---TRNPNALIICPTRELVTQVATELRKFSKYKEGVKIVPIYGGQPIDRQIQLLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGRI+DH NR  L +++  ++++DEAD ML+MGF   I+ I S++P   + 
Sbjct: 120 RGCGIVVGTPGRIMDHLNRRTLKLDDTNMVILDEADEMLNMGFKEDIEEILSMMPEGNEH 179

Query: 181 LL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
               FSAT   E+ ++++ F  +P R+E+ +   T +T+E  +               ++
Sbjct: 180 QTVLFSATWPAEILRITKQFQNDPVRVEIKSSQRTIDTVEQIYYEAPRGKKANA---LRV 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S       +IFCN KK V  LC  L K      ++HG++ Q  R +++  F+ G   +
Sbjct: 237 LLSHYDPDLCMIFCNTKKMVDELCDELNKHDIKAISLHGDMKQEFRSRVMEQFRSGNYPI 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHI 357
           ++A+D+AARG+D+ D+  V NFD+P   E YIHR+GRTGRAG+ G A TLV+  +    I
Sbjct: 297 LIATDVAARGIDVDDIDLVVNFDIPQDNEYYIHRVGRTGRAGKKGLAITLVSGGKQRAGI 356

Query: 358 DAIEKLIEKKV 368
             I +  +  +
Sbjct: 357 RDIIRYTKTNI 367


>gi|322815569|gb|EFZ24204.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 544

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 134/418 (32%), Positives = 224/418 (53%), Gaps = 6/418 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL  +++ A  +AG+  PT IQ  TIP+V +  D+ G+AQTG+GKT ++VLP++ 
Sbjct: 71  SFKALGLCEELISACAEAGWQNPTRIQAATIPVVKEGRDIIGVAQTGSGKTGAYVLPLVN 130

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   +++V     L++ PTRELA QV   F   G +  L VA L+GG     Q  +L +
Sbjct: 131 WLLT-QSKVPYLSVLVMVPTRELAQQVTAQFVMLGHSVGLRVATLVGGADMVDQACELSK 189

Query: 122 GADVLICTP-GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TP        N     +  +  LV+DEAD+MLDM +   I  I   +P +RQT
Sbjct: 190 RPHVVVGTPGRIKDHLQNTKGFKLVKLHALVLDEADKMLDMDYEKEIDAILEHLPHSRQT 249

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+  ++ ++ +  L +P  +EV+  ++T +T++  +V        +      L  
Sbjct: 250 MLFSATLNTKIDRLQKASLNDPVLLEVHRKNTTVDTLKQYYVFCPFA---QMLSYLHLYL 306

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++T  + ++FC     V  +  +L   G     + G +DQ +R   L+ FKEG I+++V
Sbjct: 307 TRETGNHILVFCRSAALVHRITLTLRILGHQALPLMGRMDQTNRNIALTKFKEGKIRILV 366

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A RGLDI     V N+ +P+R E+YIHR+GRT RAG  GKA  ++++ DI  +  I
Sbjct: 367 CTDVAQRGLDISHTDVVVNYALPDRVEDYIHRVGRTARAGAQGKAVNIISQYDILLLQRI 426

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           E     K +        +   L++++ A+    ++     Q+S  F++  +   + K 
Sbjct: 427 EATTGVKCEEWPVQEGDVAAVLQRVEDAEQETIKEIRENEQESK-FEKEVRQLVTAKR 483


>gi|309358205|emb|CAP34588.2| hypothetical protein CBG_16678 [Caenorhabditis briggsae AF16]
          Length = 1000

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 140/463 (30%), Positives = 220/463 (47%), Gaps = 14/463 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA  GL+ K++  +    Y KPT IQ + IP ++   DV GIA+TG+GKT +F+LPM  
Sbjct: 336 TFAQCGLNLKMMNVLKKLDYSKPTSIQAQAIPAIMSGRDVIGIAKTGSGKTLAFLLPMFR 395

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P  +IL PTRELA Q      K+ K   L VA   GG+    Q   L
Sbjct: 396 HILDQPELEEGDGPIAVILAPTRELAMQTYKEANKFAKVLGLRVACTYGGVGISEQIADL 455

Query: 120 ERGADVLICTPGRILD---HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  LV+DEADRM D GF P I  + + +  
Sbjct: 456 KRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRP 515

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +QT+LFSAT    ++ ++   L  P  I V   S     +    V           L  
Sbjct: 516 DKQTVLFSATFPRHMEALARKVLDKPVEILVGGKSVVCSDVTQNAVICEEHQKLLKLLEL 575

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                 +   + +    Q+K    +   ++    SV  +HG IDQ  R   +++FK G I
Sbjct: 576 L-GMYYEQGCSIVFVDKQEKADDIVDQLMKTGYNSVAPLHGGIDQHDRDSSIADFKTGVI 634

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIK 355
           +++VA+ +AARGLD+ ++  V N+D PN  E+Y+HR+GRTGRAGR G A+T V  E   K
Sbjct: 635 KVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEK 694

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
               I +  E        DL ++    E+         ++ +       GF+     Y  
Sbjct: 695 MAGEICRAFETAGVKPPADLKAM---FERFKKEMEAEGKQVH---LGGKGFEGHGYKYDE 748

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
            ++     + +K+++L   ++    D       + + +  K R
Sbjct: 749 GEAEADANK-KKMARLVHGMEAGGEDEDDLDEQLSSMIKTKRR 790


>gi|298571703|gb|ADI87855.1| hypothetical protein AKSOIL_0347 [uncultured bacterium Ak20-3]
          Length = 527

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 140/449 (31%), Positives = 230/449 (51%), Gaps = 14/449 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D     K+   + D G+  PTPIQ++ IP+VL+  D+   AQTGTGKTA+F LP+L 
Sbjct: 32  NFKDFPFDMKLQQVIADEGFSIPTPIQVRAIPIVLEGKDIIACAQTGTGKTAAFALPILH 91

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF-EAQN 116
                 +  + R   P+ L+L PTRELA QV + F  +G N  +    +IGG+   +   
Sbjct: 92  KLVQDAQTEKQRSYHPKVLVLVPTRELALQVQETFAAFGHNLGVNSIAIIGGVSVGQQMV 151

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
               R   V++ TPGR+LD   +G + +++I  L++DEADRMLDMGFIP  + I   +P 
Sbjct: 152 NLRRRSPQVVVATPGRLLDILEQGGINLSSIHTLILDEADRMLDMGFIPDTKRIVKAIPK 211

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ+L+FSAT++ E+  +S+  +  P  I V    ++AE IE    +      +      
Sbjct: 212 ERQSLMFSATISSEVNALSKQIMNTPVHISVAPKRASAEGIEQLLYSVPGDNKRALLFHL 271

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                       IIF   K     L  SL ++G     IH    Q +R  +  +F+ G +
Sbjct: 272 LENDEM---NRVIIFTRTKFGASKLSDSLIREGIRSKVIHSGKSQAARQSVWEHFRSGKL 328

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+DLA+RG+D+  + HV N+D+P+ AE YIHRIGRTGRA + G A +  + +  + 
Sbjct: 329 RVLVATDLASRGIDVDGISHVVNYDLPDCAETYIHRIGRTGRANKTGIALSFCSPDQRRL 388

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS-S 415
           + AIE+ + K +          +P ++    A          +  +  G + R +++   
Sbjct: 389 LTAIERHLGKTLPVCKD-----HPFMKPTGKADRQSEESTEDVSSEDMGREPRGRSFDEG 443

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLG 444
           + +  P     +    + + + +  ++ G
Sbjct: 444 RDNRRPFSGDSRRPSRRNERRPHRINNQG 472


>gi|149187764|ref|ZP_01866061.1| ATP-dependent RNA helicase [Vibrio shilonii AK1]
 gi|148838644|gb|EDL55584.1| ATP-dependent RNA helicase [Vibrio shilonii AK1]
          Length = 430

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 143/410 (34%), Positives = 220/410 (53%), Gaps = 10/410 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F     S  +   +    Y  PTPIQ + IP VL   D+   AQTGTGKTA+F LP++
Sbjct: 14  ISFDSFAFSSTIHQNLAALNYESPTPIQARAIPYVLDGKDILAGAQTGTGKTAAFGLPLI 73

Query: 61  TILEKGRARVRMPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             + +          +I      PTRELA QV D+     K+  L V +  GG     Q 
Sbjct: 74  HKIAQEPKVRESNSKVIRSLVLTPTRELAQQVFDSLVPLAKDTGLKVVVAYGGTSMGVQT 133

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L  GAD+L+ TPGR+LDH +   + ++  E L++DEADRMLDMGF+P +  I   +P 
Sbjct: 134 KNLVGGADILVATPGRLLDHQHNRNITLSECEYLILDEADRMLDMGFMPDLNRILKRLPK 193

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ ++FSAT    ++ ++   +  P  ++V   +STA+T+       Y    K+   L 
Sbjct: 194 ERQNMMFSATFEQRIKTLAHRIMNEPIEVQVTPANSTADTV---KQMVYPVDKKRKHELL 250

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L      +  ++F   K+    L   L+  G +  +I+G+  Q +R K L +FK G +
Sbjct: 251 AYLIGSRNWQQVLVFTKTKQGSDALAKELKLDGINAVSINGDKSQGARQKALDDFKSGKV 310

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + ++A+D+AARGLDI  +  V NF++P +AE+YIHRIGRTGRAG  G A +L++ ++   
Sbjct: 311 RALIATDVAARGLDIQQLEQVVNFELPYKAEDYIHRIGRTGRAGHAGFAVSLMSHDEQYL 370

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           ++AIE+L++ ++  +WL G   S    +E  D A     R  +    K+ 
Sbjct: 371 LEAIERLLDTRLPQEWLAGFEPSPASEVEP-DRAPRRKGRGADKRKMKAK 419


>gi|291395373|ref|XP_002714087.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2
           [Oryctolagus cuniculus]
          Length = 701

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 134/426 (31%), Positives = 214/426 (50%), Gaps = 19/426 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 262 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 321

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L +          ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 322 AHLMREGVTASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVMYGGTQLGH 381

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 382 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 441

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       V    QYSK
Sbjct: 442 GMPSKEQRQTLMFSATFPEEIQRLAGEFLKSTYLFVAVGQVGGACRDVQQTVVQIGQYSK 501

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 502 REKLVE--ILRNTGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 559

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 560 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 619

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L      +   LE+I  + +      +         D R 
Sbjct: 620 PESDNH------LAQPLVKVLTDAQQDVPAWLEEIAFSTYTPGFSGSTRGNMFASVDTR- 672

Query: 411 KNYSSQ 416
           KNY  +
Sbjct: 673 KNYQGK 678


>gi|291395371|ref|XP_002714086.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1
           [Oryctolagus cuniculus]
          Length = 729

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 134/426 (31%), Positives = 214/426 (50%), Gaps = 19/426 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 290 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 349

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L +          ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 350 AHLMREGVTASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVMYGGTQLGH 409

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 410 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 469

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       V    QYSK
Sbjct: 470 GMPSKEQRQTLMFSATFPEEIQRLAGEFLKSTYLFVAVGQVGGACRDVQQTVVQIGQYSK 529

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 530 REKLVE--ILRNTGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 587

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 588 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 647

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L      +   LE+I  + +      +         D R 
Sbjct: 648 PESDNH------LAQPLVKVLTDAQQDVPAWLEEIAFSTYTPGFSGSTRGNMFASVDTR- 700

Query: 411 KNYSSQ 416
           KNY  +
Sbjct: 701 KNYQGK 706


>gi|109071704|ref|XP_001112413.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Macaca
           mulatta]
          Length = 648

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 141/412 (34%), Positives = 219/412 (53%), Gaps = 11/412 (2%)

Query: 2   DFAD-LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F D     P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT  +++P  
Sbjct: 242 TFDDAFQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGF 301

Query: 61  TILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L+       +   P  L+L PTRELA QV     KY     L    + GG   + Q +
Sbjct: 302 IHLDLQPTLKGQRNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIE 360

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L +G D++I TPGR+ D      + + NI  LV+DEAD+MLDMGF P I  I   V   
Sbjct: 361 ELRKGVDIIIATPGRLNDLQMNNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPD 420

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++ SAT    + ++++++L+ P  + V T    A +     +    +  K   +   
Sbjct: 421 RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMHT- 479

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            LQ+  +    I+F ++K    +L   L     S+ ++HG+ +QR R K L NFK G ++
Sbjct: 480 FLQNMSSTDKVIVFVSRKAVADHLSSDLILGNISIESLHGDREQRDREKALENFKTGKVR 539

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+DLA+RGLD+ DV HV+NFD P   E Y+HRIGRTGRAGR G + T + + D +  
Sbjct: 540 ILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVA 599

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             +  ++E+    +  +L S+           H   R+     ++  G  ++
Sbjct: 600 SELINILERANQSIPEELVSMAE-----RFKAHQQKREMERKMERPQGRPKK 646


>gi|86142743|ref|ZP_01061182.1| putative RNA helicase dead-box protein [Leeuwenhoekiella blandensis
           MED217]
 gi|85830775|gb|EAQ49233.1| putative RNA helicase dead-box protein [Leeuwenhoekiella blandensis
           MED217]
          Length = 592

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 128/368 (34%), Positives = 213/368 (57%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F  LGL+  ++ AV D G+  P+ +Q K IP++L +  DV  +AQTGTGKTA+F  P++
Sbjct: 3   TFKALGLNDAILQAVTDMGFKAPSEVQEKAIPVLLREETDVVALAQTGTGKTAAFGFPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             ++      +    LIL PTREL  Q+ +  + Y  +      + + G    + Q +++
Sbjct: 63  QRIDVNNRNTQG---LILSPTRELCLQITNELKNYSSHVKGLNVVAVYGGANIQEQARQI 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR+ D   R  + +  I+  V+DEAD ML+MGF   I  I +  P  ++
Sbjct: 120 SRGAQIIVATPGRMQDMMRRNMVDITGIDYCVLDEADEMLNMGFYEDITTILADTPKDKK 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM  E+ ++++ F+++P  I V T +  AE + H     Y   ++      + L
Sbjct: 180 TWLFSATMPKEVARIAKQFMKSPIEITVGTKNMGAENVSH---EYYMVNARDRYQALKRL 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     +IFC  K++   +  +L + G++  A+HG++ Q  R  ++ +F+   IQ++
Sbjct: 237 ADANPEIFSVIFCRTKRDTQKVAENLIEDGYNASALHGDLSQNQRDLVMKSFRNRQIQML 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV HV N+ +P+  E Y HR GRTGRAG+ G +  +V+K +++ I  
Sbjct: 297 VATDVAARGIDVDDVTHVINYQLPDEIETYTHRSGRTGRAGKTGISMVIVSKSELRKIRT 356

Query: 360 IEKLIEKK 367
           +EK+I KK
Sbjct: 357 LEKIINKK 364


>gi|125556650|gb|EAZ02256.1| hypothetical protein OsI_24355 [Oryza sativa Indica Group]
          Length = 426

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 107/387 (27%), Positives = 176/387 (45%), Gaps = 13/387 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 42  SFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     V   + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 102 QLDYA---VVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS 158

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN-ITSLVPFTRQT 180
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   +       +   +  
Sbjct: 159 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQLDFLGACFIDVIQSL 218

Query: 181 LLFSATMTDELQKVSENFLQNPK---------RIEVNTPSSTAETIEHCFVATYAQYSKK 231
           L F  + +   Q     F               +                     +  + 
Sbjct: 219 LRFMISSSSSRQDPVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEFYVNVEKEEW 278

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                  L     +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F
Sbjct: 279 KLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREF 338

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G+ ++++ +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V +
Sbjct: 339 RSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTR 398

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           +D + +  I++     ++ L  +++ L
Sbjct: 399 DDERMLFDIQRFYNVVIEELPANVADL 425


>gi|330840963|ref|XP_003292476.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
 gi|325077283|gb|EGC31006.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
          Length = 780

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 157/451 (34%), Positives = 237/451 (52%), Gaps = 21/451 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  ++ AV   G+ +PTPIQ KTIPL L   D+   A TG+GKTA+F+LP+L 
Sbjct: 183 TFEELHLSRPLLKAVQKLGFSQPTPIQAKTIPLALNGKDILASASTGSGKTAAFLLPILE 242

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L    +  R  R L+L PTRELA Q     E   +  N+T  L++GG+  +AQ  +L +
Sbjct: 243 RLLFRDSEYRAIRVLVLLPTRELALQCQSVLENLAQFSNITSCLIVGGLSNKAQEVELRK 302

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR++DH  N   + + ++EIL++DEADR+LDMGF   I  I    P +RQT
Sbjct: 303 RPDVVIATPGRLIDHLLNAHGIGLEDLEILILDEADRLLDMGFKDEINKIVDSCPTSRQT 362

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY-SKKCALLQQLL 239
           +LFSAT+ DE++ +++  LQ P R++V+     A T++  FV   +Q+ S + A+L  L 
Sbjct: 363 MLFSATLNDEVKTLAKLSLQQPIRVQVDALFQVASTLDQEFVKIKSQHLSDRPAILMSLC 422

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIFC  KK V  LC            +HGN+ Q  R   L  F++G +  +
Sbjct: 423 TRVFNTGGTIIFCRSKKEVHRLCIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGKVNYL 482

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +ASD+A+RGLDI  V  V N+++PN    YIHR+GRT RAG  GK+ + + + D K +  
Sbjct: 483 LASDVASRGLDIIGVKTVINYNMPNTLAQYIHRVGRTARAGMEGKSCSFITENDRKILKE 542

Query: 360 I-----------------EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           I                       +++ L  D+  +    +++  A    A K     +K
Sbjct: 543 IVTKARNKAKSRSVSQDNVNFWRNRIEELTEDIREI--VRDELKEADLRKAEKALDKAEK 600

Query: 403 STGFDRRKKNYSSQKSHIPLKESEKISKLQQ 433
                  +   + +  +    E EK  +L +
Sbjct: 601 VISKPFEENTETERVWYKTKSEEEKSKELWK 631


>gi|291297189|ref|YP_003508587.1| DEAD/DEAH box helicase domain-containing protein [Meiothermus ruber
           DSM 1279]
 gi|290472148|gb|ADD29567.1| DEAD/DEAH box helicase domain protein [Meiothermus ruber DSM 1279]
          Length = 556

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 143/414 (34%), Positives = 222/414 (53%), Gaps = 14/414 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+   L P+V  A+   G+   TPIQ   IPL L+  DV G A+TGTGKT +F +P+ 
Sbjct: 1   MEFSAFTLRPEVAQAIQAKGFTTATPIQAAAIPLALEGKDVLGQARTGTGKTLAFGIPIA 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  R R R PR LIL PTRELA QVA   E    +  +T   + GG  +  Q + L+
Sbjct: 61  NRLDAARERGRAPRALILTPTRELALQVAKELEWLAPHLTITP--IYGGTGYGKQAEALK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR +D+  +  L ++ IEI V+DEAD ML MGF   ++ +    P TRQT
Sbjct: 119 RGTDVVVATPGRAIDYLEQRVLDLSRIEIAVLDEADEMLSMGFEEAVEQLLEATPPTRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+    +++SE + +    I V    + +          + + S     +   L 
Sbjct: 179 LLFSATLPTWARRLSERYQKAAIHINVIKDEAISYEEVAIQAPIHNRLS-----VLSDLL 233

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F + K    +L   LE +  S   IHG++ Q  R +++  F+ G + ++V
Sbjct: 234 FAYAPERTIVFTSTKAECNDLALGLESRAHSAAPIHGDMGQIDRERVMERFRSGAVSVLV 293

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP+V  V ++ +P++ E+Y+HR GRTGRAGR GK   L    + + ++ +
Sbjct: 294 ATDVAARGLDIPEVDLVVHYRLPDQNESYLHRSGRTGRAGRSGKVVILYGPREKRELETL 353

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH-ARKNNPIPQKSTGFDRRKKNY 413
           E+ +++    +N       P  E++  A+    AR+    P+      R +   
Sbjct: 354 ERELKRNFKRVN------PPTPEEVMAAKWAMLARRIAKQPEADKKLWREQAER 401


>gi|77918349|ref|YP_356164.1| DEAD helicase family protein [Pelobacter carbinolicus DSM 2380]
 gi|77544432|gb|ABA87994.1| DEAD helicase family protein [Pelobacter carbinolicus DSM 2380]
          Length = 433

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 142/414 (34%), Positives = 221/414 (53%), Gaps = 14/414 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L  +V   +   G+   TP+Q ++IPL L + DV   AQTGTGKTA+F++ + 
Sbjct: 1   MKFTELNLPAEVQRGIDAMGFTALTPVQEQSIPLALDKKDVAAQAQTGTGKTAAFLISLF 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              +   +   R PR LIL PTREL  Q++ +    G+     +  + GG+ +E Q + L
Sbjct: 61  ARLMSDKKTETRAPRALILAPTRELVVQISKDAMGLGQFCGFKIQPIFGGVDYEKQRQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS--LVPFT 177
             G D+LI TPGR++D+  +G + + +IE LVIDEADRM DMGFI  ++ I         
Sbjct: 121 HAGVDILIATPGRLIDYVKQGAVSLGSIEALVIDEADRMFDMGFIRDLRYILRKLPAFDR 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT++  + +++  F+   ++I+V   + TAE IE        +      L   
Sbjct: 181 RQTMLFSATLSHRVMELAYEFMDLAEKIKVAPENVTAEQIEEVLYHVSRREKFALLLGLL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             +    +   +   N K+   +L   L+  GF    I G+I Q+ RM+IL  FKEG I 
Sbjct: 241 KKEPAKCVMLFV---NTKREAEHLTGRLQVNGFKAALISGDIPQKKRMRILDEFKEGRIH 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +V +D+A+RG+ +  V HV N+D+P   E+Y+HRIGRT RAG  GKA +   ++ + ++
Sbjct: 298 FLVGTDVASRGIHVDGVTHVINYDLPQDREDYVHRIGRTARAGAAGKAISFADEDLVYYL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSL------NPPLEKIDIAQHNHARKNNPIPQKSTG 405
             IE  I  ++  +  + S          P++K   A+   A K    P+K   
Sbjct: 358 ADIEDYIGHRIPSVFPEDSDFCHTYKAYKPVKK--SARGRSAAKPGSPPKKDGA 409


>gi|327290128|ref|XP_003229776.1| PREDICTED: probable ATP-dependent RNA helicase DDX6-like [Anolis
           carolinensis]
          Length = 484

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 112/377 (29%), Positives = 196/377 (51%), Gaps = 8/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 98  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 157

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L+    +    + +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 158 RLDL---KKDYIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 214

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++I+++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 215 DTVHVVIATPGRILDLIKKGVAKVDHIQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 274

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK    F+ +  +           T++           ++       L 
Sbjct: 275 LLYSATFPLSVQK----FMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLF 330

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 331 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 390

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 391 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 450

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +  ++  
Sbjct: 451 EEQLGTEIKPIPSNIDK 467


>gi|320582894|gb|EFW97111.1| pre-mRNA processing RNA-helicase, putative [Pichia angusta DL-1]
          Length = 752

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 132/412 (32%), Positives = 209/412 (50%), Gaps = 13/412 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + +  LGL   +  A+   G+  PTPIQ + +P V+  HD+ GIA+TG+GKT +F+LP+ 
Sbjct: 190 ITWDHLGLPLSLRSALDSLGFEAPTPIQCEALPNVMSGHDLIGIAKTGSGKTLAFLLPLF 249

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L    A     R L++ PTRELA Q+ +    + +   L      GG     Q  +++
Sbjct: 250 RQLLANPA-APSVRALVMTPTRELAMQIFNESSVFLEALKLRGCCCYGGQSISQQIAEIK 308

Query: 121 RGADVLICTPGRILDHFNRGKLLM---NNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +G D+++ TPGRI+D        +   +++  LV+DEADRM DMGF P +  I  +    
Sbjct: 309 KGCDLVVGTPGRIIDLLCANNGRVLRLSHVTYLVLDEADRMFDMGFEPQVMKILKVTRPD 368

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT    ++ ++   L +P  + V   +   + I   F     +      L   
Sbjct: 369 RQTVLFSATFPPRMEALARRCLTDPVEVLVGAKNLVNDKIMQQFEILDEEQKFGRLLQVL 428

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF +++ +  +L + L  +G+   ++HG  +Q  R  I+S+FK   I 
Sbjct: 429 ARFQSSDSGKILIFVDKQDSCDSLANQLIIRGYPTLSLHGGKEQIDRDGIISDFKSNVID 488

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+ +A+RGLD+ D+  V N+D PN  E+Y+HR+GRTGRAGR G A T V +   +  
Sbjct: 489 ILVATSVASRGLDVKDLNLVVNYDSPNHMEDYVHRVGRTGRAGRSGTAVTFVTRHQERSA 548

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             I +L+E         LS   PP E   IA     +      +  +GF  R
Sbjct: 549 SDIVRLLE---------LSGTQPPAELAQIASRFREKLKRGEVKYGSGFGGR 591


>gi|119384480|ref|YP_915536.1| DEAD/DEAH box helicase domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119374247|gb|ABL69840.1| DEAD/DEAH box helicase domain protein [Paracoccus denitrificans
           PD1222]
          Length = 479

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 160/423 (37%), Positives = 236/423 (55%), Gaps = 15/423 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G+  +V   +   G   P+PIQ K+IP ++   D+ G+AQTGTGKTA+F LPMLT 
Sbjct: 69  FTRMGIDARVAINLPGLGIETPSPIQEKSIPGIVAGRDLLGLAQTGTGKTAAFGLPMLTR 128

Query: 63  LEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L     +         IL PTRELA Q+A+N + Y     +    ++GG     Q ++LE
Sbjct: 129 LLNIGRKPEPRTCRALILAPTRELATQIAENIDNYAIGTPIRQFRVVGGASINVQVQRLE 188

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVLI TPGR++D   RG + ++    LV+DEAD+MLD+GFI  ++ I  ++P  RQT
Sbjct: 189 RGVDVLIATPGRLIDLIERGAIDLSQTRYLVLDEADQMLDIGFIHALRRIAKMLPRERQT 248

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++++++L +P R+ VN P   AE I+                      
Sbjct: 249 LLFSATMPKLMEELADSYLNDPLRVAVNPPGQAAEKIDQGVHFVNQGDKATL---LAEYL 305

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+   +  I+F   K     LC  L+K GF V AIHGN  Q  R + L++F+ G  +++V
Sbjct: 306 SKHVDELAIVFGRTKHGSEKLCKLLDKWGFKVAAIHGNKSQGQRERALASFRAGETKVLV 365

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V HV+N+D+PN  ENY+HRIGRT RAGR G+A    +  +I  + AI
Sbjct: 366 ATDVAARGLDIPQVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAIAFCSPTEIGELRAI 425

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EK ++ K+  + G+      P E   I +     +  P  + + G  +R     S+    
Sbjct: 426 EKAMKAKIAVVGGE-----EPFEAAKIRE-----RGGPAGRPAQGARKRPARRPSRAPKT 475

Query: 421 PLK 423
             +
Sbjct: 476 AQR 478


>gi|239995669|ref|ZP_04716193.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii ATCC 27126]
          Length = 408

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 130/370 (35%), Positives = 197/370 (53%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   +  A  D G+  PT IQ   IP  L   D+   A TGTGKTA+F+LP  
Sbjct: 1   MTFEELELDEALCHAAADMGFETPTSIQELVIPHALDGRDILASAPTGTGKTAAFLLPAC 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L+  R +    R LIL PTRELA QV +      K+  +   ++ GGI +    + L
Sbjct: 61  QFLLDYPRRQPGATRILILTPTRELALQVYEQALAITKHTQIVCGVITGGINYGTDKETL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+L+ TPGR+L+H  +      +IE L++DEADRMLDMGF   +  I +   + +Q
Sbjct: 121 SKNLDILVATPGRLLEHIEKEAADCRDIECLILDEADRMLDMGFSTVVNQIAAEARWRKQ 180

Query: 180 TLLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            LLFSAT     ++  + + L NP+ IE N        I   +        K+   L   
Sbjct: 181 NLLFSATLEGKGVKTFAHDILNNPEVIEANPSRKEKNKIHQWYHLADDMNHKQA--LLVN 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  Q+T  + ++F   ++ +  L   L  +   VC + G + Q  R+  L+ FK G + +
Sbjct: 239 ILKQETTTSAVVFVKTRERLQMLKDFLASKDIPVCWLQGEMPQDKRIAALARFKSGEVPI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+P+V HV NFD+P +A+ Y+HRIGRTGRAG  G A +LV   D   + 
Sbjct: 299 LLATDVAARGIDVPNVSHVINFDMPRKADVYVHRIGRTGRAGAKGTAISLVEAHDFDMVA 358

Query: 359 AIEKLIEKKV 368
              + + + +
Sbjct: 359 KTARYMGEPL 368


>gi|224086197|ref|XP_002193200.1| PREDICTED: DEAD box polypeptide 42 protein [Taeniopygia guttata]
          Length = 923

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 141/413 (34%), Positives = 229/413 (55%), Gaps = 8/413 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 314 HIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKAL 373

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 374 QEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 433

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +        +  SK   L ++L+
Sbjct: 434 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRRLV 493

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L ++L+++  ++  +HG++DQ  R K++S FK+  I ++
Sbjct: 494 EFTSSG-SVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPIL 552

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612

Query: 360 IEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           + + +E     ++ +L  L   NP   K    +    +K N I     G+  R
Sbjct: 613 LVRNLEGANQHVSKELLDLAMQNPWFRKSRF-KGGKGKKLN-IGGGGLGYRER 663


>gi|325068259|ref|ZP_08126932.1| DEAD/DEAH box helicase domain protein [Actinomyces oris K20]
          Length = 507

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 141/448 (31%), Positives = 225/448 (50%), Gaps = 25/448 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD G+ P++  A+   G   P PIQ  T+P+ L+  D+ G A+TGTGKT  F +P+L 
Sbjct: 71  TFADFGVEPEICEALDAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLM 130

Query: 62  ILEKGRARVRM-------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                             P+ L++ PTRELA QVA+          + +  + GG  +E 
Sbjct: 131 DTLGPGEEGWDEDPASGSPQALVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEP 190

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERGA+V++ TPGR++D   RG L + ++  +V+DEAD MLD+GF+P ++ I +  
Sbjct: 191 QIEDLERGAEVVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILART 250

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              R T+LFSATM   +  ++  ++  P  I    P     T++      Y  +S     
Sbjct: 251 RADRHTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQTVQQVVYRTHSMNKVE 310

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +   +     IIF   K+    +   L  +GF+  A+HG++ Q +R + L  F+  
Sbjct: 311 VVSRILQAEGRGRTIIFARTKRTAARVADDLRARGFATGALHGDLGQGAREQALRAFRNN 370

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+  P   + Y+HRIGRTGRAG  G A T V  +D+
Sbjct: 371 KVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFVDWDDV 430

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                I K +   ++           P+E    ++H  +  +  IP+K TG   R     
Sbjct: 431 PRWRIIAKALGLPIEE----------PVETYHTSEHLFS--DLSIPEKVTGRLPR----- 473

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADS 442
             K  +   ++E+I  L +  +     S
Sbjct: 474 -HKRTLEGLDAEEIEDLGETGKRGRKQS 500


>gi|326774180|ref|ZP_08233462.1| ATP-dependent RNA helicase DeaD [Actinomyces viscosus C505]
 gi|326636319|gb|EGE37223.1| ATP-dependent RNA helicase DeaD [Actinomyces viscosus C505]
          Length = 558

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 141/448 (31%), Positives = 225/448 (50%), Gaps = 25/448 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD G+ P++  A+   G   P PIQ  T+P+ L+  D+ G A+TGTGKT  F +P+L 
Sbjct: 71  TFADFGVEPEICEALDAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLM 130

Query: 62  ILEKGRARVRM-------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                             P+ L++ PTRELA QVA+          + +  + GG  +E 
Sbjct: 131 DTLGPGEEGWDEDPASGSPQALVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEP 190

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERGA+V++ TPGR++D   RG L + ++  +V+DEAD MLD+GF+P ++ I +  
Sbjct: 191 QIEDLERGAEVVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILART 250

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              R T+LFSATM   +  ++  ++  P  I    P     T++      Y  +S     
Sbjct: 251 RADRHTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQTVQQVVYRTHSMNKVE 310

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +   +     IIF   K+    +   L  +GF+  A+HG++ Q +R + L  F+  
Sbjct: 311 VVSRILQAEGRGRTIIFARTKRTAARVADDLRARGFATGALHGDLGQGAREQALRAFRNN 370

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+  P   + Y+HRIGRTGRAG  G A T V  +D+
Sbjct: 371 KVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFVDWDDV 430

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                I K +   ++           P+E    ++H  +  +  IP+K TG   R     
Sbjct: 431 PRWRIIAKALGLPIEE----------PVETYHTSEHLFS--DLSIPEKVTGRLPR----- 473

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADS 442
             K  +   ++E+I  L +  +     S
Sbjct: 474 -HKRTLEGLDAEEIEDLGETGKRGRKQS 500


>gi|315055611|ref|XP_003177180.1| ATP-dependent rRNA helicase RRP3 [Arthroderma gypseum CBS 118893]
 gi|311339026|gb|EFQ98228.1| ATP-dependent rRNA helicase RRP3 [Arthroderma gypseum CBS 118893]
          Length = 474

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 134/430 (31%), Positives = 232/430 (53%), Gaps = 9/430 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 50  TFKDLGIIDSLCDACTSLGYKAPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQ 109

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    L+L PTRELA Q++++FE  G   ++  A+++GG+   +Q+  L +
Sbjct: 110 AL---MEKPQPYFGLVLAPTRELAVQISESFEALGSLISVRCAVIVGGMDMISQSISLGK 166

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +    N     + N++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 167 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRT 226

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT++ +++ +    L NP R+ +++  +  +T+     +      K   +    + 
Sbjct: 227 YLFSATLSSKVESLQRASLSNPLRVSISS--NKYQTVSTLLQSYIFIPHKYKDIYLVHIL 284

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   +  IIF         L   L   GF    +HG + Q +R+  L  F+ G+  ++V
Sbjct: 285 NEFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILV 344

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V NFD+P+ ++ YIHR+GRT RAG+ G+A ++V + +++    I
Sbjct: 345 ATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQRI 404

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD---RRKKNYSSQK 417
           E  + K++     +   +    +++  AQ     +   + +K        R ++   S++
Sbjct: 405 EAALGKQLPEHKTEKEEVMVLSDRVGDAQRLAVTEMKDLHEKRGTKGATLRGRRKGDSKR 464

Query: 418 SHIPLKESEK 427
               +   EK
Sbjct: 465 GRDDMDREEK 474


>gi|39972847|ref|XP_367814.1| hypothetical protein MGG_07718 [Magnaporthe oryzae 70-15]
 gi|152013519|sp|A4QYM6|DRS1_MAGO7 RecName: Full=ATP-dependent RNA helicase DRS1
 gi|145012485|gb|EDJ97139.1| hypothetical protein MGG_07718 [Magnaporthe oryzae 70-15]
          Length = 790

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 151/468 (32%), Positives = 228/468 (48%), Gaps = 9/468 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++  +   G+ KPTPIQ KTIP+ L   DV G A TG+GKTA+FV+P+L 
Sbjct: 256 SFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILE 315

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R +IL PTRELA Q      K   + ++   L +GG+  + Q  +L  
Sbjct: 316 RLLYRPKKVPTSRVVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESELRL 375

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 376 RPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQT 435

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT  +  +    L  P R+ V++   T  T+   FV       +K       L 
Sbjct: 436 MLFSATMTSSVDNLIRVGLNKPVRLMVDSQKKTVVTLTQEFVRLRPGREEKRMGYLVYLC 495

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  IIF  QKK   +        G S   +HG++ Q  R++ +  F++G +  ++
Sbjct: 496 KNLYTERVIIFFRQKKIAHHARIIFGLLGLSCAELHGSMSQIQRIQSVEAFRDGKVSFLL 555

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G A TL A+ D K + A 
Sbjct: 556 ATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAA 615

Query: 361 E---KLIEKKVDWLNGDLSSLNPPLEKID-----IAQHNHARKNNPIPQKSTGFDRRKKN 412
               K    K+     D +  +    KID     +       K   +  ++    R+ +N
Sbjct: 616 VKAGKAQGAKISSRIIDAADADSWQAKIDELEDEVEAVMREEKEEKVLAQADMEMRKGEN 675

Query: 413 YSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
               +  I  +      + ++D +            +   +  K+ GK
Sbjct: 676 MIRYEDDIKARPKRTWFETEKDKKAAREAGRAALNGVREALKKKHGGK 723


>gi|3776001|emb|CAA09203.1| RNA helicase [Arabidopsis thaliana]
          Length = 498

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 111/375 (29%), Positives = 185/375 (49%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L   ++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGKT +F +P+L 
Sbjct: 125 EFENYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLE 184

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++       + + +IL PTRELA Q +   ++  K  N+ V +  GG        +L +
Sbjct: 185 KIDPNN---NVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQ 241

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L   F P ++ +   +P  RQ L
Sbjct: 242 PVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFL 301

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++     F     R           T+            ++       L S
Sbjct: 302 MFSATFPVTVKA----FKDRHLRKPYVINLMDQLTLMGVTQYYAFVEERQKVHCLNTLFS 357

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++   F+ G  + +V 
Sbjct: 358 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVC 417

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E+Y+HR+GR+GR G  G A  LV  ED   +   E
Sbjct: 418 TDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTE 477

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +  ++ 
Sbjct: 478 QELGTEIKPIPSNID 492


>gi|161407972|ref|YP_270752.2| ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea 34H]
          Length = 417

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 130/394 (32%), Positives = 206/394 (52%), Gaps = 4/394 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L  +++ ++   GY KPT IQ   IP  +   DV   A TGTGKTA+F+LP+   
Sbjct: 2   FEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQH 61

Query: 63  L-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L +  R +   PR LIL PTRELA Q+ ++ E+  +   +   ++ GG+ + +    L  
Sbjct: 62  LLDYPRTKPGFPRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHADILTS 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+L+ TPGR+L++    +     IEILV+DEADRMLD+GF   I  I +   + +QT+
Sbjct: 122 TTDILVATPGRLLEYIENEQFDAREIEILVLDEADRMLDLGFSETINRIVAEARWRKQTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ +             + + + +  S  E          A  +     L      
Sbjct: 182 LFSATL-ESPGVQLFAEEVLNEPVFLESKPSRKEKAVIHQWLHLADDANHKLNLLVNTLK 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q+ ++  ++F N+++ V  L   L  +      + G + Q  R K +  FK+G ++++VA
Sbjct: 241 QEGVERTVVFANKRETVQYLSGKLYAEELPCVWLEGKMPQDKRNKAIERFKKGEVKVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+ HV NFD+P + + YIHRIGRTGRAG+ G A +LV   D+  I  IE
Sbjct: 301 TDVAARGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLVEAHDMGVIGKIE 360

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           +  ++++      +  L P  ++  +       K
Sbjct: 361 RYTKERLSR--RFIQELRPKNKESRVVNKKAKIK 392


>gi|71145379|gb|AAZ25852.1| ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea 34H]
          Length = 430

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 130/394 (32%), Positives = 206/394 (52%), Gaps = 4/394 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L  +++ ++   GY KPT IQ   IP  +   DV   A TGTGKTA+F+LP+   
Sbjct: 15  FEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQH 74

Query: 63  L-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L +  R +   PR LIL PTRELA Q+ ++ E+  +   +   ++ GG+ + +    L  
Sbjct: 75  LLDYPRTKPGFPRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHADILTS 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+L+ TPGR+L++    +     IEILV+DEADRMLD+GF   I  I +   + +QT+
Sbjct: 135 TTDILVATPGRLLEYIENEQFDAREIEILVLDEADRMLDLGFSETINRIVAEARWRKQTM 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ +             + + + +  S  E          A  +     L      
Sbjct: 195 LFSATL-ESPGVQLFAEEVLNEPVFLESKPSRKEKAVIHQWLHLADDANHKLNLLVNTLK 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q+ ++  ++F N+++ V  L   L  +      + G + Q  R K +  FK+G ++++VA
Sbjct: 254 QEGVERTVVFANKRETVQYLSGKLYAEELPCVWLEGKMPQDKRNKAIERFKKGEVKVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+ HV NFD+P + + YIHRIGRTGRAG+ G A +LV   D+  I  IE
Sbjct: 314 TDVAARGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLVEAHDMGVIGKIE 373

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           +  ++++      +  L P  ++  +       K
Sbjct: 374 RYTKERLSR--RFIQELRPKNKESRVVNKKAKIK 405


>gi|163750898|ref|ZP_02158131.1| ATP-dependent RNA helicase DbpA [Shewanella benthica KT99]
 gi|161329322|gb|EDQ00319.1| ATP-dependent RNA helicase DbpA [Shewanella benthica KT99]
          Length = 458

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 144/404 (35%), Positives = 218/404 (53%), Gaps = 10/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P+++  +   GY   T IQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 1   MSFSTLTLKPELIDNLKTMGYDSMTAIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L+    +    ++L+L PTRELA QVA       +  +    L +  G+P   Q   L
Sbjct: 61  NKLDV---KRFCIQSLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH +R  L + N+  LV+DEADRML+MGF+P +  I + +P  RQ
Sbjct: 118 EHGAHIIVGTPGRIIDHLSRELLNLENVNTLVLDEADRMLEMGFLPDLDYIMAEMPRERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   ++QKV+E          +   +ST ++            +K      +LL
Sbjct: 178 TLLFSATFPKQIQKVAEQI---MFEPVMVKVASTHDSSSIEQHFYQIDSNKDRPKALRLL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q    + ++FCN K+    +  +L   GFSV A+HG+++QR R   L  F   +  +M
Sbjct: 235 LLQHRPDSAVVFCNTKRETKEVAATLASDGFSVVALHGDLEQRDRDITLMQFANKSASIM 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+++    E +IHRIGRTGRAG  G A T    +D   I  
Sbjct: 295 VATDVAARGLDIEALDMVINYELAFDTEVHIHRIGRTGRAGSKGMALTFYTYDDDYKIKL 354

Query: 360 IEKLIEKKV--DWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIP 400
           +E+ +E+ +  + L  + L    P   ++   Q    +KN   P
Sbjct: 355 LEEYLERDIVSEGLPPENLLDTFPTQPRMVTIQIEGGKKNKVRP 398


>gi|307721103|ref|YP_003892243.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979196|gb|ADN09231.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 415

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 127/366 (34%), Positives = 197/366 (53%), Gaps = 8/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  +   + D G+ KPTPIQ K IPLVL   DV   AQTG+GK+ASFVLP+L
Sbjct: 1   MPFSTLNLSSTLQKTLQDKGFKKPTPIQEKVIPLVLNNKDVIAQAQTGSGKSASFVLPLL 60

Query: 61  TILEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQN 116
            +  + R   +  +  IL   PTREL  QVA+ FE++ K+      ++  IGG     Q 
Sbjct: 61  QLWSQKRDNAKKGKIKILVLTPTRELTLQVAEVFEEFSKDLAKKPQIVSLIGGESIGEQL 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             +++G DVL+ T GR LD   + ++ ++++  LV+DEAD+ML+  F   +  +   +P 
Sbjct: 121 YNIQQGCDVLVATSGRFLDVLKKKQMNLSHLNYLVLDEADKMLNFDFTEELDLVLESLPA 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT   ++  +    +       ++       T+E+         ++K   L 
Sbjct: 181 KRQNLLFSATYPPKMLDLVSKIMS----NPLHVTIEQKPTVENIRQRVIEVDNEKRGPLL 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + L  +   K  ++F   K+   N+     K G    + + +++Q  R   L  FKE  I
Sbjct: 237 RHLLKEHKYKRVLVFMANKRATDNIAEKFRKYGIEAASFNADLEQDIRNDTLQAFKEAKI 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++ A+D+AARGLDI ++  + N+D+P    +YIHRIGRT RAG+ G+A + +  E  +H
Sbjct: 297 NVLFATDIAARGLDIDNIDCIINYDLPRSPADYIHRIGRTARAGKSGEAISFINHETQEH 356

Query: 357 IDAIEK 362
              IEK
Sbjct: 357 FKLIEK 362


>gi|224048550|ref|XP_002190979.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 53
           [Taeniopygia guttata]
          Length = 729

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 137/398 (34%), Positives = 214/398 (53%), Gaps = 5/398 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI---LEKG 66
           P ++ ++   G+ KPTPIQ +  P++LQ  D+ GIAQTGTGKT ++++P           
Sbjct: 334 PDIMASIRKVGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLTSQPIS 393

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           + +   P  L+L PTRELA QV     KY      ++ +  GG   + Q   + +G D++
Sbjct: 394 KDQRGGPGMLVLAPTRELALQVEAECSKYAYKGIKSICVY-GGGDRKGQIDMVTKGVDIV 452

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + +I  LV+DEADRMLDMGF P I  I   V   RQT++ SAT
Sbjct: 453 IATPGRLNDLQMNNFINLKSITYLVLDEADRMLDMGFEPQIMKILIDVRPDRQTVMTSAT 512

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             D ++++++++L+NP  + V T                    KK A +   ++S     
Sbjct: 513 WPDGVRRLAKSYLKNPMIVYVGTLDLA-AVSTVQQKVIVIPEEKKRAFMHSFIKSMKPKD 571

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             IIF  +K    +L      QG  V ++HGN +Q  R + L +FK+G ++++VA+DLA+
Sbjct: 572 KVIIFVGKKLTADDLASDFGIQGIPVQSLHGNREQCDREQALDDFKKGKVRILVATDLAS 631

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLD+ D+ HVFNFD P   E Y+HR+GRTGRAGR G+A TLV   D +    +  ++E+
Sbjct: 632 RGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRSGEAVTLVTSNDWRFASELIDILER 691

Query: 367 KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
               +  +L ++    ++  + +        P  + S 
Sbjct: 692 ANQVVPDELIAMAERYKQSQMRKEIEKDIQRPWKKSSK 729


>gi|157962445|ref|YP_001502479.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157847445|gb|ABV87944.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 448

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 118/384 (30%), Positives = 186/384 (48%), Gaps = 3/384 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F D  L  +++ ++   G   PT IQ + IP+ L   D+   ++TG+GKT +F+LP M
Sbjct: 1   MQFTDFALDQRLLQSLKHMGIDTPTEIQEQAIPVALAGKDLMASSKTGSGKTLAFLLPAM 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++       R PR +IL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRLISCKALSKRDPRVVILLPTRELATQVYSQLRLLVANTQFKATKILGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH  +  L +N +E+L++DEADRMLD+GF   ++ I +     R+
Sbjct: 121 SRDPHFVVATPGRLADHLKQHHLHLNGLELLILDEADRMLDLGFAEQLKMINAAADHKRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D                 V   +   E  +         +      +   +
Sbjct: 181 QTLMFSATLDHGDVNDIANELLKFPEHVAIGAGNLEHKDITQRIFLCDHLDHKEAILTRI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  IIF   +++   L   L  +GF   ++ G + Q +R +I+  F  G  Q++
Sbjct: 241 LKEEQQKQIIIFTATRQDTDRLATKLAAEGFKTASLSGELKQNARNQIMDEFSRGLQQIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +   
Sbjct: 301 VTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWINFTQ 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE 383
           ++  + K  ++   +L  L     
Sbjct: 361 VQTFLNKTFNF--SELEGLKAKFS 382


>gi|317153822|ref|YP_004121870.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944073|gb|ADU63124.1| DEAD/DEAH box helicase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 421

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 135/384 (35%), Positives = 204/384 (53%), Gaps = 6/384 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F       ++   +   G+  PTPIQ   IP VL+  DV G+AQTGTGKTA+F LP+L
Sbjct: 1   MTFDHFSFDLRINAGIKSCGFTVPTPIQTLAIPEVLKGRDVMGLAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L   RA  + P    +L PTRELA Q+ + F+ +G+   +  + + GG+ F  Q    
Sbjct: 61  QRLLDSRATGQGPIRCLVLAPTRELALQIQETFDVFGRQAGIRSSCVFGGVGFNPQINAA 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   V+ C    +         L +   + V+DEADRMLDMGF+P ++ I S +P  RQ
Sbjct: 121 RKATVVVACPGRLVALLQQGDIRLDHVDTL-VLDEADRMLDMGFMPDLKRILSRLPAKRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  +++K+++  L +P R++V+         +      Y         L + L
Sbjct: 180 NLLFSATMPADIRKLADTILVDPARVQVSNTVPVESVTQT----FYPVADHLKGGLLEAL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 ++ ++F   K    NL   L  +G S   + GN+ Q  R + L  F+ G  ++M
Sbjct: 236 LGSMERESVLVFTRTKHRAKNLAKRLGLRGMSATFLQGNMSQNQRQRALDGFRCGDFEIM 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D   + HV NFD P+ AE Y HRIGRTGRAGR G+A +L+ +ED   +  
Sbjct: 296 VATDIAARGIDCDRISHVINFDAPDTAEAYTHRIGRTGRAGRTGEALSLITREDHLVVRD 355

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE 383
           IE+++ + VD    +    + P +
Sbjct: 356 IERVLRRSVDQRTVEGFDYDQPFK 379


>gi|322797566|gb|EFZ19610.1| hypothetical protein SINV_13775 [Solenopsis invicta]
          Length = 692

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 140/443 (31%), Positives = 226/443 (51%), Gaps = 17/443 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G++ K +  +   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 31  SWAQCGVTKKELEVLKKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFR 90

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  LI+ PTREL  Q+  + +K+ K+  L+   + GG     Q  +L
Sbjct: 91  HILDQPPLADGDGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHVCVYGGTGISEQIAEL 150

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 151 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIMENVRP 210

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT   +++ ++   L  P  ++V   S   +           +  +K   L 
Sbjct: 211 DRQTVLFSATFPRQMEALARRILTRPVEVQVGGRSVVCKD--VEQHVVVLEEDQKFYKLL 268

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L       + IIF ++++N   L   L K  +S  ++HG IDQ  R   + +FK G  
Sbjct: 269 EILGHYQDKGSTIIFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTILDFKAGRT 328

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  E  ++
Sbjct: 329 KLLVATSVAARGLDVKHLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITSEQERY 388

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I +           +L+ +  P     + +   AR+     +  TG     K +   
Sbjct: 389 AGDILRA---------HELAGVPVPEPLRQLWEGYKARQAADGKKVHTGGGFSGKGFKFD 439

Query: 417 KSHIPL-KESEKISKLQQDIQEN 438
           +S   L  E +K  K    +Q++
Sbjct: 440 ESEAALANEKKKFQKAALGLQDS 462


>gi|28302109|gb|AAL87139.2|AF479820_1 DEAD box RNA helicase Vasa [Cyprinus carpio]
          Length = 691

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 135/433 (31%), Positives = 216/433 (49%), Gaps = 34/433 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 253 MTFDEAGLCESLRKNVTKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 312

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                        + ++ P  +I+ PTREL  Q+     K+     +   ++ GGI    
Sbjct: 313 QRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGY 372

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM--LDMGFIPYIQN--- 169
             +++ +G +VL  TPGR+ D   RGK+ ++ +  LV+DEADRM  +DMGF P ++    
Sbjct: 373 TIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMDMGFEPDMRKLVG 432

Query: 170 -ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
                    RQTL+FSAT  +++Q+++ +FL+             A +     +      
Sbjct: 433 SPGMPSKEDRQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQVTST 492

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            +        L      +  ++F   K++   +   L ++  S  +IHG+ +QR R K L
Sbjct: 493 KR---DQLLELLRSTGNERTMVFVETKRSADFIATFLCQEKMSTTSIHGDREQREREKAL 549

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           S+F+ G   ++VA+ +AARGLDI  V HV NFD+P+  + Y+HRIGRTGR G  G+A + 
Sbjct: 550 SDFRTGQCPVLVATSVAARGLDIEQVQHVVNFDLPSSIDEYVHRIGRTGRCGNIGRAVSF 609

Query: 349 VAKE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
              E D     ++       V  L+G    +   LE+I  + H            +TGF+
Sbjct: 610 FNPESDTPLARSL-------VKVLSGAQQEVPKWLEEIAFSAH-----------GTTGFN 651

Query: 408 RRKKNYSSQKSHI 420
            R K ++S  +  
Sbjct: 652 PRGKVFASTDTRK 664


>gi|322796322|gb|EFZ18887.1| hypothetical protein SINV_00745 [Solenopsis invicta]
          Length = 420

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 123/420 (29%), Positives = 198/420 (47%), Gaps = 12/420 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  L L+  ++      G  KPTPIQ   IP +L   D  G A+TG+GKT +F LP+L 
Sbjct: 7   DFLHLKLNSWLLAQCKSMGLKKPTPIQENCIPRILMGEDCIGCAKTGSGKTLAFALPILQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L            L+L PTRELA Q+AD F   GK  NL   +++GG+    Q  +L +
Sbjct: 67  KL---CEDPYGIFALVLTPTRELAFQIADQFAAIGKVINLKKCVIVGGMDMMIQGLELSK 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+ DH +            ++ +    L  G           V   ++ +
Sbjct: 124 RPHIVVATPGRLADHLDSCNTFSLQKIKFLVLDEADRLLGGHFDKQLKKIFAVLPKQKQI 183

Query: 182 LFSATMT----DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           LF +       D+++K++ N +   +  +    ++  E  +   +            + +
Sbjct: 184 LFFSATMTDTLDKVKKMACNKVFTWQEKDDAGIATVKELDQRYVLCPKDVLDSYLVEVIR 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             ++ +     +IF +  KN   L  +L   GF+  A+H  + Q+ R+  L+ FK   IQ
Sbjct: 244 TFRTTNKNGCIMIFTDTCKNCQLLSMTLNDVGFTNVALHAMLKQKERLVALNKFKSNHIQ 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+++AARGLDIP V  V N  +PN  + YIHR+GRT RAG +G A +L+   DIK +
Sbjct: 304 ILIATNVAARGLDIPAVQLVVNHVIPNVPKEYIHRVGRTARAGENGMAISLITPHDIKLL 363

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            AIE  I  K+     D   +   L +I +A     ++   I    T F  +K     +K
Sbjct: 364 HAIEDAIGTKLTEYKVDDKEIVTILTQISVA-----KREAEIKLDETDFYEKKMINKQKK 418


>gi|115770281|ref|XP_783077.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
           [Strongylocentrotus purpuratus]
          Length = 660

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 133/369 (36%), Positives = 213/369 (57%), Gaps = 1/369 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F ++ LS  ++ A+    + +PTPIQ  TIP+ L   D+C  A TGTGKTA+F+LP++
Sbjct: 79  MAFTEMNLSRPILRAISGLNFTEPTPIQSATIPVALLGKDICACAATGTGKTAAFMLPVV 138

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L++ PTREL  Q+ +   +  +  N+   L +GG+  + Q   L 
Sbjct: 139 ERLLYKPKQAPVTRVLVVTPTRELGVQIFNVSRQLCEFTNIECCLAVGGLDIKLQEAALR 198

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G D++I TPGR++DH  N     ++++E+L++DEADRMLD  F   ++ I  +    RQ
Sbjct: 199 KGPDIVIATPGRLIDHLHNAPTFSLSSVEVLILDEADRMLDEFFEEQMKEIIKMCSVARQ 258

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTD+++ ++   L+NP RI VN  +  A  ++  F+            +   L
Sbjct: 259 TMLFSATMTDQVKDLALVSLKNPVRIFVNENTDVAYNLQQEFIRIRDNREGDREAIVSAL 318

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++   + ++F   KK    L   L   G  V  +HG++ Q  RM++L  FKE  I ++
Sbjct: 319 CCRNFHDHCMVFVQTKKQAHRLHVILGLLGIKVGELHGDLSQTKRMEMLRMFKEDLIDIL 378

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARGLDI  V  V NF +PN  ++Y+HR+GRT RAGR G++ +L  +++ + +  
Sbjct: 379 VATDLAARGLDIEGVKTVINFTMPNSEKHYVHRVGRTARAGRSGRSVSLAGEKERRMLKE 438

Query: 360 IEKLIEKKV 368
           + K  +  V
Sbjct: 439 LVKRAKNPV 447


>gi|190405005|gb|EDV08272.1| eukaryotic initiation factor 4A-12 [Saccharomyces cerevisiae
           RM11-1a]
          Length = 399

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 108/381 (28%), Positives = 194/381 (50%), Gaps = 8/381 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+  P+ IQ + I  ++   DV   AQ+GTGKTA+F + +L 
Sbjct: 24  TFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    R +  + LIL PTRELA+Q+    +  G   N+    + GG   +   KK+++
Sbjct: 84  AIDL---RKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQK 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM---LDMGFIPYIQNITSLVPFTR 178
                +      +    + ++L      +++ +         +GF   I +I + +P   
Sbjct: 141 HGCQAVSGTPGRVLDMIKRQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNC 200

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++ SATM  ++ +V+  F+ +P +I V     + E I+   V    +  K   L    
Sbjct: 201 QVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCD-- 258

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +    T+   +IFCN KK V  L   L +  F+V ++HG++ Q  R K++++F+ G  ++
Sbjct: 259 IYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRV 318

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   + K D+  + 
Sbjct: 319 LISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLR 378

Query: 359 AIEKLIEKKVDWLNGDLSSLN 379
            IEK    K++ +  + + L+
Sbjct: 379 EIEKFYCIKINPMPANFAELS 399


>gi|189460629|ref|ZP_03009414.1| hypothetical protein BACCOP_01270 [Bacteroides coprocola DSM 17136]
 gi|189432588|gb|EDV01573.1| hypothetical protein BACCOP_01270 [Bacteroides coprocola DSM 17136]
          Length = 637

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 132/368 (35%), Positives = 214/368 (58%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F +LG+S ++  A+ + GY  P P+Q + IP +L    DV  +AQTGTGKTA+F LP++
Sbjct: 3   TFEELGVSAEIRQAIEEMGYENPMPVQEEVIPYLLGNRNDVVALAQTGTGKTAAFGLPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             ++      R+P+ L+L PTREL  Q+A +   Y K   +L +  + GG   E+Q + L
Sbjct: 63  QKIDVT---KRIPQALVLCPTRELCLQIAGDLTDYSKYITDLKILPVYGGSSIESQIRSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G  +++ TPGR++D   R    +  I  +V+DEAD ML+MGF   I  I   VP  R 
Sbjct: 120 KQGVHIIVATPGRLIDLMERKVARLETIRDVVMDEADEMLNMGFTDSINAILEQVPEDRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSATM+ E+ ++++ +L N K I + T +   E  ++     Y  ++K   L  + +
Sbjct: 180 TLMFSATMSPEIARIAKTYLHNAKEITIGTKN---EGSKNVHHIAYIVHAKDKYLALKRV 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +K    +   L + G++  ++HG + Q  R  ++  F++  +QL+
Sbjct: 237 VDYYPQIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRYLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVNDLTHVINYALPDDTESYTHRSGRTGRAGKTGISIAIINLREKGKMRE 356

Query: 360 IEKLIEKK 367
           IE++I KK
Sbjct: 357 IERIINKK 364


>gi|67969935|dbj|BAE01315.1| unnamed protein product [Macaca fascicularis]
          Length = 509

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 133/429 (31%), Positives = 216/429 (50%), Gaps = 6/429 (1%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA--RV 70
           +  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +  +       R 
Sbjct: 1   MDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERG 60

Query: 71  RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130
             P  L+L PTRELA QV     +Y +   L    + GG P   Q + LERG ++ I TP
Sbjct: 61  DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATP 120

Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190
           GR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL++SAT   E
Sbjct: 121 GRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 180

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ-DTMKNGI 249
           +++++E+FL++   I +     +A       V       K   L++ + +   +     I
Sbjct: 181 VRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTI 240

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           +F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   +++A+D+A+RGL
Sbjct: 241 VFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGL 300

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           D+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +  +  ++ +   
Sbjct: 301 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 360

Query: 370 WLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESE 426
            +N  L  L                  R++     K  GF+  +   +  + +  L + +
Sbjct: 361 AINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRD 420

Query: 427 KISKLQQDI 435
             +K Q  +
Sbjct: 421 FGAKTQNGV 429


>gi|18407327|ref|NP_566099.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|75318047|sp|O22907|RH24_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 24
 gi|16323192|gb|AAL15330.1| At2g47330/T8I13.17 [Arabidopsis thaliana]
 gi|20196880|gb|AAB63833.2| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
 gi|21700913|gb|AAM70580.1| At2g47330/T8I13.17 [Arabidopsis thaliana]
 gi|330255734|gb|AEC10828.1| DEAD-box ATP-dependent RNA helicase 24 [Arabidopsis thaliana]
          Length = 760

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 139/380 (36%), Positives = 210/380 (55%), Gaps = 4/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D G S +++ A+    Y KPT IQ + +P+VL   DV GIA+TG+GKTA+FVLPM+ 
Sbjct: 229 TFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIV 288

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       R   P  +I  PTRELA Q+    +K+ K Y L V+ + GG+    Q K+L
Sbjct: 289 HIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKEL 348

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++++ TPGR++D      L M     LV+DEADRM D+GF P +++I   +   RQ
Sbjct: 349 KAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQ 408

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  +++K++   L +P R+ V       E I        +   K    L + L
Sbjct: 409 TLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEK-LPWLLEKL 467

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + ++F ++K  V  +   L    F V A+HG+ DQ SRM+ L  FK G   ++
Sbjct: 468 PGMIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVL 527

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIKHID 358
           +A+D+AARGLDI  +  V N+D+    + ++HRIGRTGRAG R G A+TLV + + +   
Sbjct: 528 IATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAG 587

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +   +      +  +L+ L
Sbjct: 588 ELVNSLVAAGQNVPPELTDL 607


>gi|296194577|ref|XP_002745047.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 3
           [Callithrix jacchus]
          Length = 690

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 129/422 (30%), Positives = 211/422 (50%), Gaps = 18/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 254 LTFEEANLCQTLSNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 313

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             + +          ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 314 AHMMRDGVTASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGH 373

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 374 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 433

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       V    Q+SK
Sbjct: 434 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSK 493

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 494 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 551

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 552 FRSGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 611

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  +  L      +   LE+I  + +      +         D RK
Sbjct: 612 PESDNH------LAQPLIKVLTDAQQDVPAWLEEIAFSAYIPGFSGSTRGSVFASVDTRK 665

Query: 411 KN 412
             
Sbjct: 666 GK 667


>gi|296194575|ref|XP_002745046.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 2
           [Callithrix jacchus]
          Length = 704

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 129/422 (30%), Positives = 211/422 (50%), Gaps = 18/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 268 LTFEEANLCQTLSNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 327

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             + +          ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 328 AHMMRDGVTASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGH 387

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 388 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 447

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       V    Q+SK
Sbjct: 448 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSK 507

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 508 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 565

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 566 FRSGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 625

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  +  L      +   LE+I  + +      +         D RK
Sbjct: 626 PESDNH------LAQPLIKVLTDAQQDVPAWLEEIAFSAYIPGFSGSTRGSVFASVDTRK 679

Query: 411 KN 412
             
Sbjct: 680 GK 681


>gi|296194573|ref|XP_002745045.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 1
           [Callithrix jacchus]
          Length = 724

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 129/422 (30%), Positives = 211/422 (50%), Gaps = 18/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 288 LTFEEANLCQTLSNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 347

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             + +          ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 348 AHMMRDGVTASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGH 407

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 408 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 467

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       V    Q+SK
Sbjct: 468 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSK 527

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 528 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 585

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 586 FRSGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 645

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  +  L      +   LE+I  + +      +         D RK
Sbjct: 646 PESDNH------LAQPLIKVLTDAQQDVPAWLEEIAFSAYIPGFSGSTRGSVFASVDTRK 699

Query: 411 KN 412
             
Sbjct: 700 GK 701


>gi|255070425|ref|XP_002507294.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
 gi|226522569|gb|ACO68552.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
          Length = 484

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 136/419 (32%), Positives = 197/419 (47%), Gaps = 12/419 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL+  +   +   G    TP+Q   IP +L   DV G+AQTGTGKTA+F LP+L I
Sbjct: 70  FRSLGLNSWLCENITSMGIATATPVQRGCIPAILAGRDVIGVAQTGTGKTAAFALPILQI 129

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L            L L PTRELA+Q+++ F  +     L    + GG     Q K L   
Sbjct: 130 L---GREPYGIFCLCLTPTRELASQISEQFIAFSAGMTLRCETVFGGENIRTQAKALMLR 186

Query: 123 ADVLICTPGRILDHFNRG----KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             + + TPGR++DHF       K   N   +++ +    +           + +L    R
Sbjct: 187 PHIAVATPGRLMDHFLHCSAVAKCFENVRCLVLDEADRLLDPGFEAELQAIMHNLPSANR 246

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT+T  +  V E  L      E    +  A   +  +     +  +   +    
Sbjct: 247 QTLMFSATITKSISAVQELALGKALLFEALKDTQLAGRCKEEYCFIAPRVKEVYLVHILK 306

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  ++ I+F    +    L   L   G +  A+H    Q  R   LS FK G IQ+
Sbjct: 307 RAPTWGTRSMIVFAGTVRKCQMLKEILSVLGINCVALHAAKKQARRHASLSRFKSGEIQI 366

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+D+A+RGLDIP V  V N+DVP    +YIHRIGRT RAGR G+A TLV + DI  + 
Sbjct: 367 MIATDIASRGLDIPTVDMVVNYDVPLIPRDYIHRIGRTARAGRVGRAITLVTQHDISLVH 426

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK-NNPIPQKSTGFDRRKKNYSSQ 416
            IE+L  +K+     +LS L+      D+AQ   AR+  N     + GF+   +   S+
Sbjct: 427 QIEQLTCRKL----VELSKLSEEAILKDMAQVFAARRIANLNMGAAGGFNEILRQKRSK 481


>gi|224083374|ref|XP_002307002.1| predicted protein [Populus trichocarpa]
 gi|222856451|gb|EEE93998.1| predicted protein [Populus trichocarpa]
          Length = 895

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 126/382 (32%), Positives = 195/382 (51%), Gaps = 7/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            +   GL+ K++  +    Y KP  IQ + +P+++   D  GIA+TG+GKT +FVLPM  
Sbjct: 256 TWHQTGLTSKILETIKKLNYEKPMTIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLR 315

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P  LI+ PTREL  Q+  +  K+ K   +    + GG     Q  +L
Sbjct: 316 HIKDQPPVEAGEGPIGLIMAPTRELVQQIHSDIRKFTKALGIRCVPVYGGSGVAQQISEL 375

Query: 120 ERGADVLICTPGRILDHFNR---GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RG ++++CTPGR++D           +  +  LV+DEADRM DMGF P I  I   +  
Sbjct: 376 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 435

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             QT+LFSAT   +++ ++   L  P  I+V   S   + I            ++   L 
Sbjct: 436 DHQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDINQLV--EVRPEGERWFRLL 493

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL         ++F   +     L   L K G    ++HG  DQ  R   +S+FK    
Sbjct: 494 ELLGVWSEKGKILVFVQSQDKCDALFRDLLKFGHPCLSLHGAKDQTDRESTISDFKSNVC 553

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L++A+ +AARGLD+ D+  V N+DVPN  E+Y+HR+GRTGRAGR G A T  +++D ++
Sbjct: 554 NLLIATSVAARGLDVKDLELVINYDVPNHYEDYVHRVGRTGRAGRKGCAITFFSEDDARY 613

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
              + K +E     +  DL +L
Sbjct: 614 APDLVKALELSEQVVPQDLKAL 635


>gi|326476440|gb|EGE00450.1| ATP-dependent rRNA helicase RRP3 [Trichophyton tonsurans CBS
           112818]
 gi|326482119|gb|EGE06129.1| ATP-dependent rRNA helicase RRP3 [Trichophyton equinum CBS 127.97]
          Length = 474

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 133/430 (30%), Positives = 230/430 (53%), Gaps = 9/430 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 50  TFKDLGIIDSLCDACTSLGYKNPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQ 109

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    L+L PTRELA Q+ + FE  G   ++  A+++GG+   +Q+  L +
Sbjct: 110 AL---MEKPQPYFGLVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSISLGK 166

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +    N     + N++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 167 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRT 226

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT++ +++ +    L NP R+ +++  +  +T+     +      K   +    + 
Sbjct: 227 YLFSATLSSKVESLQRASLSNPLRVSISS--NKYQTVSTLLQSYIFIPHKYKDIYLVHIL 284

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   +  IIF         L   L   GF    +HG + Q +R+  L  F+ G+  ++V
Sbjct: 285 NEFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILV 344

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V NFD+P+ ++ YIHR+GRT RAG+ G+A ++V + +++    I
Sbjct: 345 ATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQRI 404

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD---RRKKNYSSQK 417
           E  + K++     +   +    +++  AQ     +   + +K        R ++   S++
Sbjct: 405 EAALGKQLPEHKTEKEEVMVLSDRVGDAQRLAVTEMKDLHEKRGTKGATLRGRRKGDSKR 464

Query: 418 SHIPLKESEK 427
               +   E+
Sbjct: 465 GRDDMDREER 474


>gi|73949725|ref|XP_544339.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
           [Canis familiaris]
          Length = 725

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 129/422 (30%), Positives = 211/422 (50%), Gaps = 18/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 289 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 348

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             +            ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 349 AHMMHDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGY 408

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  ++ LV+DEADRMLDMGF P ++      
Sbjct: 409 SIRQIVQGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCP 468

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       +    QYSK
Sbjct: 469 GMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSK 528

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 529 REKLVE--ILRSIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 586

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 587 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 646

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L+     +   LE+I  + +      +         D RK
Sbjct: 647 PESDNH------LAQPLVKVLSDAQQDVPAWLEEIAFSTYVPGFSGSSRGNVFASVDTRK 700

Query: 411 KN 412
             
Sbjct: 701 GK 702


>gi|314933730|ref|ZP_07841095.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           caprae C87]
 gi|313653880|gb|EFS17637.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           caprae C87]
          Length = 447

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 140/449 (31%), Positives = 213/449 (47%), Gaps = 22/449 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ K IP +L+  ++ G +QTGTGKT SF+LP++ +
Sbjct: 6   FEHFNLDESLIKAVQDLNFEKPTEIQNKIIPRILKGTNLIGQSQTGTGKTHSFLLPLIQM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNKKLER 121
           ++        P+ +++ PTRELA Q+        K        L IGG   E   ++  R
Sbjct: 66  IDVDLQE---PQAIVVAPTRELAQQLFQAASHLCKFKQEVNVKLFIGGTDIEKDKQRCNR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L  +    L++DEAD M+D+G I  +  I + +       
Sbjct: 123 QPQLIIGTPTRINDLAQGGHLHAHLASNLIVDEADLMIDLGLIEDVDYIAARLNDEAHIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+   LQ     +L  P+ +EV+  S   + IE   + T         L       
Sbjct: 183 VFSATIPKSLQPFLNKYLSQPEFVEVDHKSHNKKNIEFYLIPTKGTAKVDKTLNL---ID 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFCN ++N   L  SL K+G  V  IHG +  R R + +   +    Q ++A
Sbjct: 240 ILNPYLSIIFCNSRENANELADSLNKEGIKVGMIHGGLTPRERKQQMKRIRNLDFQYVIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  IE
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 362 K--LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN---NPIPQKSTGFDRR------K 410
                 + VD  NG+L     P++  D  +    + +   N +  K     +R      K
Sbjct: 360 DKGYHFENVDIKNGEL----KPIKAHDTRRTRQRKDDHLTNEVKHKVRSKSKRKVKPGYK 415

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQEND 439
           K +  +   +  +E +  SK Q   +  +
Sbjct: 416 KKFKQEVEKMKRQERKIYSKRQNKQKRKN 444


>gi|258516456|ref|YP_003192678.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780161|gb|ACV64055.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 446

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 131/425 (30%), Positives = 225/425 (52%), Gaps = 12/425 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LG+  K+   + + G  +PTPIQ++ IP+++   D+   +QTGTGKT +F+LP+L 
Sbjct: 12  DFLLLGIRRKINDFLRENGITEPTPIQVQAIPVLMTGKDLLAQSQTGTGKTLAFLLPVLE 71

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +E  + +V+    LI+ PTRELA Q+    +  G    + +  + GG   E Q KKL+ 
Sbjct: 72  KIEVNKPQVQS---LIITPTRELALQITGEAKNLGDKLGINILSVYGGQDVERQIKKLKG 128

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH  R  + ++ +  LV+DEAD+ML MGF+  ++ I    P  +QT+
Sbjct: 129 HIHMVIGTPGRLLDHIRRKTISLSGVSKLVLDEADQMLHMGFLEDVEEIIRKSPVKKQTM 188

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++ ++  +++ P  I + +     + I            K+       L  
Sbjct: 189 LFSATLPPRIRALAARYMRKPADIRIQSRQVILDKI---KQIVIELEEKEKLTQLCRLID 245

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++     IIFC+ ++    L  +L ++G++   +HG++ Q  R +++  F    +QL+VA
Sbjct: 246 ENQPYLAIIFCHTRQRASELAAALIQRGYAADELHGDLSQAKRQQVMKRFSSARLQLLVA 305

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+++D+ +  E+YIHRIGRTGRAG  G A T V   + +++  IE
Sbjct: 306 TDIAARGLDIEGVTHVYSYDISHYLESYIHRIGRTGRAGESGTAVTFVLPGEHRYLRIIE 365

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           +     ++    D   L      I  ++ + AR  +   +       +K   +   +   
Sbjct: 366 QGTGAAIEKYTADGQKL------IKTSKRSPARAGSGAGKLKPAAGEKKSPQTGAAAVKT 419

Query: 422 LKESE 426
               +
Sbjct: 420 KNRRQ 424


>gi|302138848|gb|ADK94762.1| vasa [Clarias gariepinus]
          Length = 681

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 141/427 (33%), Positives = 218/427 (51%), Gaps = 21/427 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  AGYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 246 MTFEEAHLCETLNRNVSRAGYVKPTPVQKYGIPIISAGRDLMACAQTGSGKTAAFLLPIL 305

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + V+ P  +I+ PTREL  Q+     K+     +   ++ GGI    
Sbjct: 306 QRLMSDGAAASKFSEVQEPEVIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGISTGY 365

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
             +++ +G +VL  TPGR+LD   RGK+ ++ +  LV+DEADRMLDMGF   ++      
Sbjct: 366 TIQEVLKGCNVLCGTPGRLLDIIGRGKVGLSKVRYLVLDEADRMLDMGFETDMRKLVSSP 425

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++Q+++ +FL+      V      A +     +    +YSK
Sbjct: 426 GMPPKEQRQTLMFSATYPEDIQRLAADFLKENYLFLVVGVVGGACSDIEQLIIQVTRYSK 485

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +       +      +  ++F   K++   +   L ++     +IHG+ +QR R K LS+
Sbjct: 486 RE--QLLEMLKTTGDERTMVFVETKRSADFIATFLCQEKVPTTSIHGDREQREREKALSD 543

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI  V HV NFD+P   E Y+HRIGRTGR G  G+A +   
Sbjct: 544 FRTGKCPVLVATSVAARGLDIEHVQHVVNFDLPKSIEEYVHRIGRTGRCGNTGRAVSFFD 603

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            E D     ++       V  L+G    +   LE+I  + H      NP  +     D R
Sbjct: 604 PEPDAHLARSL-------VKVLSGAQQEVPSWLEEIAFSAHGTT-GFNPHGKVFASTDTR 655

Query: 410 KKNYSSQ 416
           K ++ +Q
Sbjct: 656 KGSFMTQ 662


>gi|170690407|ref|ZP_02881574.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170144842|gb|EDT13003.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 481

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 165/468 (35%), Positives = 245/468 (52%), Gaps = 12/468 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  + D  Y  PTP+Q K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIDPLLRNMRDLNYQTPTPVQAKAIPAVLSGKDVMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +    V   R    +L PTRELA QV  +F  YGK  +L      GG+    Q  K
Sbjct: 61  QRLGQQGPAVSSNRARVLVLVPTRELAEQVLQSFIDYGKGLDLRFLAAYGGVSVNPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT TD+++ ++   L+ P  I V+ P++TA  I    V    +      +    
Sbjct: 181 QTLLFSATFTDDIRALAAGILRGPVDISVSPPNATASKIRQWVVPVDKRNKPDLFMHL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +Q+  ++ ++F   +  V  L   L++ G++V  IHG+  Q +RM+ L  FK G + +
Sbjct: 239 -VAQNNWEHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARMRALERFKTGEVNM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           AIE LI + +  +   G  +    P  +         +   P   K+          +S+
Sbjct: 358 AIEALIRQTLRREEEPGFEAEHRVP--QTSAMGETIKKPKKPKKPKAPQAAPGASQLTSK 415

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
           K    + E+++    Q+ +  + A  L        F + K R K   K
Sbjct: 416 KPRPQIGENKRKPAAQRAVAADKATRLSSGS---PFSVQKPRSKAASK 460


>gi|282880561|ref|ZP_06289268.1| putative ATP-dependent RNA helicase DeaD [Prevotella timonensis
           CRIS 5C-B1]
 gi|281305664|gb|EFA97717.1| putative ATP-dependent RNA helicase DeaD [Prevotella timonensis
           CRIS 5C-B1]
          Length = 627

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 149/490 (30%), Positives = 252/490 (51%), Gaps = 48/490 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F +LG+S ++  A+ + G+V P P+Q + IP +L    DV  +AQTGTGKTA++ LP+L
Sbjct: 3   TFEELGVSEEIRRAIEELGFVHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAYGLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             ++      +  + +IL PTREL  Q+AD+ + + K         + G      Q   L
Sbjct: 63  QKIDVA---SKHTQAIILSPTRELCLQIADDLKDFAKYIKNLHVEPVYGGASIVTQIHAL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR++D  NRG   ++++  +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KHGAQIIVATPGRLIDLMNRGVAKLDHVNNVVLDEADEMLNMGFSESINTILAGVPDDRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E++K+++ +L++ K I V + +  AE + H     Y   ++   L  + +
Sbjct: 180 TLLFSATMSKEIEKIAKTYLRDYKEIVVGSRNEGAENVNH---IYYMVNARDKYLALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIFC  K     +   L K G++  A+HG++ Q+ R   +  F++   QL+
Sbjct: 237 VDYYPRIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHVTQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ ++ HV N+ +P+  ENY HR GRTGRAG+ G +  ++   +   + A
Sbjct: 297 VATDVAARGLDVDELTHVINYGMPDDTENYTHRSGRTGRAGKKGTSICIIHTRERSKVRA 356

Query: 360 IEKLIEKK-----------------------VDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
           +EK+I K+                       ++ ++ D   + P +  ++I +H      
Sbjct: 357 VEKIIGKEFVDGTLPTAQEICAKQLYKAMHDIEKIDVDEEQIAPFM--VEINRHFEYVDK 414

Query: 397 NPIPQK--STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFML 454
           + I +K  S  F R    + +  ++ P  E   + +      ++  +  G RG   A   
Sbjct: 415 DDIIKKIVSLTFGR----FLAYYANAPEIEKPSLKR------DDRGEEKGMRGGRKA--- 461

Query: 455 PKNRGKLNDK 464
              RG    +
Sbjct: 462 RSERGGGRSR 471


>gi|70732712|ref|YP_262475.1| DEAD-box ATP dependent DNA helicase [Pseudomonas fluorescens Pf-5]
 gi|68347011|gb|AAY94617.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           fluorescens Pf-5]
          Length = 444

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 151/374 (40%), Positives = 219/374 (58%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLGGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L     +V     R LIL PTRELA QV ++  +Y ++  L    + GG+    Q  K
Sbjct: 61  QLLTLEGPKVDSNSVRALILVPTRELAEQVHESVRQYAEHLPLRTYAVYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD F +  +  + ++ LV+DEADRMLD+GF   +++I + +P  R
Sbjct: 121 LRKGVDLLVATPGRLLDLFRQNAVKFSQLQTLVLDEADRMLDLGFSEELKSIYAALPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D +++++   L +P  IEV+  +  A T+            K+   L   
Sbjct: 181 QTLLFSATFSDAIRQLAGQMLNDPLSIEVSPRNVAANTV---KQWVVPVDKKRKPELFSH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  ++  K  ++F   +  V  L   L+ QG +   IHG+  Q +R + L  FK   IQ+
Sbjct: 238 LLRKNRWKQVLVFAKTRNGVDALVEKLQGQGVNADGIHGDKPQATRQRALDRFKASEIQI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V NFD+P  AE+YIHRIGRTGRAG  G+A +LV  +++  + 
Sbjct: 298 LVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADEVNLLS 357

Query: 359 AIEKLIEKKVDWLN 372
           AIE L  + +    
Sbjct: 358 AIEMLTRQTLKRHE 371


>gi|312197808|ref|YP_004017869.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
 gi|311229144|gb|ADP81999.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
          Length = 566

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 135/372 (36%), Positives = 205/372 (55%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ A+ + GY  P+PIQ  TIP +L   DV G+AQTGTGKTA+F LP+L+
Sbjct: 9   TFHDLGLGSPVLRALTELGYEVPSPIQAGTIPALLDGRDVVGLAQTGTGKTAAFALPILS 68

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            ++    R    + L+L PTREL  QVA+ F +Y  +      L + G    A       
Sbjct: 69  RIDA---RSTATQALVLAPTRELVLQVAEAFGRYAHHLTGLHVLPVYGGQAYAPQLAGFR 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  RG L +  + +LV+DEAD ML MGF   +  I +  P  +Q 
Sbjct: 126 RGAQVVVGTPGRVIDHLERGTLDLGGLRMLVLDEADEMLRMGFQEEVDRILADTPDAKQV 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++++S  +L++P  I V   + TA      F+                ++
Sbjct: 186 ALFSATMPAPIRRISRQYLRDPVEITVRARTVTAANTRQRFLTVAGPRKMDALTRVLEVE 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + M   +   +  ++V     S      ++   +G++ Q  R K+++  ++GT+ L+V
Sbjct: 246 PFEAMIIFVRTKSATEDVAERLRSRGFATEAI---NGDLSQPQREKLIAQLRDGTLDLLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P   E+Y+HRIGRTGRAGR G+A  LV   +   + AI
Sbjct: 303 ATDVAARGLDVERITHVVNYDIPTDPESYVHRIGRTGRAGRSGEALLLVTPREKGLLAAI 362

Query: 361 EKLIEKKVDWLN 372
           EK   + +  + 
Sbjct: 363 EKATRQPLTEME 374


>gi|17510559|ref|NP_490891.1| hypothetical protein Y71G12B.8 [Caenorhabditis elegans]
          Length = 763

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 152/501 (30%), Positives = 238/501 (47%), Gaps = 49/501 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  + LS +++ A   AGY  PTPIQ   IP+ L   D+C  A TGTGKTA+FVLP+L
Sbjct: 148 VSFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPIL 207

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          R L+L PTRELA QV   F K      L V L  GG+  +AQ   L 
Sbjct: 208 ERMIYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALR 267

Query: 121 RGADVLICTPGRILDHFNR-------------------------GKLLMNNIEILVIDEA 155
            G DV++ TPGR++DH +                              + N ++LV+DEA
Sbjct: 268 SGPDVVVATPGRLIDHLHNSPSFNLSNIEVFFKTPNIPPKKNSRKICKIPNFQVLVLDEA 327

Query: 156 DRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
           DRML+  F   +  +  L    RQTLLFSATMT+E+ +++   LQ P +I +N  + TA 
Sbjct: 328 DRMLEEAFRDQMNELIRLCAQNRQTLLFSATMTEEIDELASMSLQKPVKIFINENTDTAL 387

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
            +   F+   A        +   L ++    N I+F   KK+   +   L   G  V  +
Sbjct: 388 KLRQEFIRIRAGRETDREAMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQM 447

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
             ++ Q  R++ LS FK+  I ++V++DLA+RGLDI  V  V N ++P   + YIHR+GR
Sbjct: 448 QSSLTQGQRIESLSKFKKAEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGR 507

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAI----------EKL--------IEKKVDWLNGDLSS 377
           T RAG+ G++ +LV +++ K +  I          ++L          +++D L   +  
Sbjct: 508 TARAGKAGRSISLVGEDERKLLKEIVNSNADRTLKQRLVAPEVVEAYRRRIDELEETIQQ 567

Query: 378 LNPP---LEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQD 434
           ++      +++ IA+ + A+  N +     G    ++     K     K+ ++  K Q  
Sbjct: 568 IDEEDRAEKELRIAEASMAKTQNALEVGENGGAPAERRVWMMKESQIEKQRKREEKRQMK 627

Query: 435 IQENDADSLGFRGNMPAFMLP 455
           +   DA         P  +  
Sbjct: 628 V---DARKKAEAAKTPEDIQI 645


>gi|297842017|ref|XP_002888890.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297334731|gb|EFH65149.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 414

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 193/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F      
Sbjct: 42  SFDAMELKPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFC---SG 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L++    +   + L+L PTRELA Q+       G    +     +GG       + L+ 
Sbjct: 99  VLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQS 158

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 159 GVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVG 218

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 219 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL--YE 276

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 277 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   +  ED + +  I+
Sbjct: 337 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTTEDERMLADIQ 396

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     V+ L  +++ L
Sbjct: 397 RFYNVVVEELPSNVADL 413


>gi|281206116|gb|EFA80305.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 858

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 121/400 (30%), Positives = 205/400 (51%), Gaps = 28/400 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  L  +++ A+   GY KP+PIQ++ IP+ L   DV GIA+TG+GKTA+FV+PML 
Sbjct: 433 SWRESILPREILEAIAKMGYEKPSPIQMQAIPIALWGRDVLGIAETGSGKTAAFVIPMLV 492

Query: 62  ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + K            P  L++ PTRELA Q+      +  ++      L+GG P E Q 
Sbjct: 493 YISKQPRLNKETEADGPYALVMAPTRELALQIEKEARNFANHFGFRCVALVGGQPIEDQI 552

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY---------- 166
            +L +G +++I TPGR+ D   +  L++N    +V+DEAD M+DMGF P           
Sbjct: 553 FQLSKGCEIVIATPGRLNDCLEKRYLVLNQCNYVVLDEADLMIDMGFEPQVVSVLDAMPS 612

Query: 167 -----------IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
                       +  T      R T+L+SATM  +++++S  +L+    + +       +
Sbjct: 613 SFLKSENEEEAEKQETDANRIYRTTILYSATMPPKVERLSRKYLRRAVHVIIGEAGKAVD 672

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
            I+   V   + + K+  L+  L          IIF N+KK+   +   + + G +  ++
Sbjct: 673 RIKQNVVFVKSDHDKRVQLMDLLSNGPPPPI--IIFVNKKKHCEIISEIVSECGMTSTSL 730

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           H +  Q  R   L  FK     +++A+D+A+RG+ +  V HV N+D+PN  E+Y HRIGR
Sbjct: 731 HSSRSQDQREMALDGFKRRRYNVLIATDVASRGIHVEGVTHVINYDMPNNIEDYTHRIGR 790

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDL 375
           TGRAG  G A + +  +D + +  ++ ++    + +  +L
Sbjct: 791 TGRAGMEGMASSFLTDKDTEIMYDLKNMLTTTHNVVPAEL 830


>gi|163754240|ref|ZP_02161363.1| possible ATP-dependent RNA helicase [Kordia algicida OT-1]
 gi|161326454|gb|EDP97780.1| possible ATP-dependent RNA helicase [Kordia algicida OT-1]
          Length = 450

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 149/441 (33%), Positives = 236/441 (53%), Gaps = 7/441 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  LS ++  A+ D G+  PTPIQ ++  ++    DV GIAQTGTGKT +++LP+L 
Sbjct: 3   TFQDFDLSKQLHYAIEDLGFTTPTPIQEQSFSVIRGGKDVVGIAQTGTGKTFAYMLPLLR 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +   PR L+L PTREL  QV +  E + K  N+ +  + GG+    Q + L++
Sbjct: 63  DLKFS--KQVNPRILVLVPTRELVIQVVEQIELFAKYINVRIVGVYGGVNMNTQAQSLQQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GAD+++ TPGR+ D      L + +I+ LVIDE D MLD+GF   I NI  L+P  RQ +
Sbjct: 121 GADIVVATPGRLYDLVLSRALQLKSIKKLVIDEVDVMLDLGFRFQITNIFELLPEQRQNI 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATMTD++  + ++F   P +I +    +  + I     A    Y+K   L   L   
Sbjct: 181 MFSATMTDDVNLLIDDFFIAPHKISIAVSGTPLDNISQTCYAVQNFYTKVNLLTHLLKDK 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   K  +   N++          +  G  V  IH N  Q  R++ + NF  G  +++VA
Sbjct: 241 EIYSKVLVFISNKRIADRLFDCLQKDFGEEVAVIHSNKTQNYRIRSIENFNTGENRILVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  + HVFNF+ PN  ENY+HRIGR GRA   G A     K+++++ +AIE
Sbjct: 301 TDVMARGLDLDMITHVFNFNTPNYPENYMHRIGRAGRAKAKGNAVLFYTKKELEYKEAIE 360

Query: 362 KLIEKKVDWL----NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           KL+  ++  L      ++S+   P E+  I + N+  K   + +K     + K   ++Q 
Sbjct: 361 KLMNYEIPQLEFPEEVEISTQLAPEEQTRIREVNNPLKTEGL-EKGFHEKKEKNKKTNQG 419

Query: 418 SHIPLKESEKISKLQQDIQEN 438
                + ++K  K +    +N
Sbjct: 420 GSYRREIAKKYKKPKTRGDKN 440


>gi|302818333|ref|XP_002990840.1| hypothetical protein SELMODRAFT_11027 [Selaginella moellendorffii]
 gi|300141401|gb|EFJ08113.1| hypothetical protein SELMODRAFT_11027 [Selaginella moellendorffii]
          Length = 583

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 116/390 (29%), Positives = 195/390 (50%), Gaps = 15/390 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + G+ P+++ AV +AGY KPTPIQ+ +IPL LQ+ DV GIA TG+GKTA+FV+PML 
Sbjct: 186 NWEESGICPEILRAVQEAGYKKPTPIQMASIPLGLQQRDVIGIAGTGSGKTAAFVIPMLM 245

Query: 62  I-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                        +  P  L++ PT ELA Q+ +   K  K  ++ V  L+ G     Q+
Sbjct: 246 YVSRLPKMTLERAIEGPYALVMAPTTELAQQIQEETVKLAKYMDINVLSLVAGEAIGGQS 305

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS-LVP 175
            KL +G +++I TPGR+L    +G  +++    +V+DE DRM+ +GF   + +    +  
Sbjct: 306 SKLLQGCEIVIATPGRLLHCLEQGYAVLHQCNYVVLDEGDRMIALGFEEQVIDALEAMPS 365

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPK---------RIEVNTPSSTAETIEHCFVATYA 226
              +       + D + + +  F               +      +  E  +        
Sbjct: 366 SNMKPESEDVELEDRIYRTTYMFSATMPPAVERLAKKYLRNPVVVTIEEMSKRISQKVIM 425

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              ++     + L  +    + I+F N KK    +   L   G  V  IHG   Q+ R  
Sbjct: 426 VDEEEKPKRLRRLLDELGEMSTIVFVNTKKQADKVSKQLHDMGIKVATIHGGKTQQKRQT 485

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
              +F+      ++A+D+  RG+D+PDVGH+ N+D+P+  E YIHRIGRTGRAG+ G A 
Sbjct: 486 NFQDFRSKRRSCLIATDVVGRGIDVPDVGHIVNYDMPSTVEMYIHRIGRTGRAGKSGAAT 545

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
           T +   D +    +++L+ +  + +  +L+
Sbjct: 546 TFLTLNDSEVFYDLKQLLVRTKNPVPPELA 575


>gi|293349333|ref|XP_001060057.2| PREDICTED: rCG25924-like [Rattus norvegicus]
 gi|149019091|gb|EDL77732.1| rCG25924 [Rattus norvegicus]
          Length = 620

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 129/401 (32%), Positives = 214/401 (53%), Gaps = 10/401 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT S+++P    L+     
Sbjct: 225 PEVMENIKRAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLSYLMPGFIHLDSQPLE 284

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
            R    +++       A   +         +L    + GG   + Q + + +G D++I T
Sbjct: 285 QRNGPGMLVLTPTRELALQVEAECSKYSYGDLKSVCVYGGGDRDGQIQDVSKGVDIIIAT 344

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGR+ D      + + ++  LV+DEAD+MLDMGF P I  I   V   RQT++ SAT   
Sbjct: 345 PGRLNDLQMNNFVNLKSVTYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTIMTSATWPY 404

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
            ++++++++L+ P  + V T    A +     +    +  K    +Q  L++       I
Sbjct: 405 AVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIITTEEEK-RTHIQTFLENMSPKDKVI 463

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           +F ++K    +L   L  +  SV ++HGN +Q  R K L NFK G +++++A+DLA+RGL
Sbjct: 464 VFVSRKAVADHLSSDLILRHISVESLHGNREQSDREKALENFKTGKVRILIATDLASRGL 523

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           D+ D+ HV+N+D P   E Y+HR+GRTGRAGR G + TL+ + D +    +  ++E+   
Sbjct: 524 DVHDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGMSITLITRNDWRIATELINILER--- 580

Query: 370 WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
                 ++ N P E + +A+   A K     +K  G  + K
Sbjct: 581 ------ANQNIPEELVLMAERYKANKLKREMEKKMGRPQGK 615


>gi|311264024|ref|XP_003129962.1| PREDICTED: probable ATP-dependent RNA helicase DDX6-like [Sus
           scrofa]
          Length = 483

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 111/377 (29%), Positives = 196/377 (51%), Gaps = 8/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 97  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L+    +    + +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 157 RLDL---KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 214 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK    F+ +  +           T++           ++       L 
Sbjct: 274 LLYSATFPLSVQK----FMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLF 329

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 330 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 389

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 390 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +  ++  
Sbjct: 450 EEQLGTEIKPIPSNIDK 466


>gi|301785421|ref|XP_002928123.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 3
           [Ailuropoda melanoleuca]
          Length = 692

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 129/422 (30%), Positives = 212/422 (50%), Gaps = 18/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 256 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 315

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             + +          ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 316 AHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGH 375

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  ++ LV+DEADRMLDMGF P ++      
Sbjct: 376 SIRQIVQGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCP 435

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       +    QYSK
Sbjct: 436 GMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSK 495

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 496 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 553

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 554 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 613

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L+     +   LE+I  + +      +         D RK
Sbjct: 614 PESDNH------LAQPLVKVLSDAQQDVPAWLEEIAFSTYVPGFSGSARGNVFASVDTRK 667

Query: 411 KN 412
             
Sbjct: 668 GK 669


>gi|301785419|ref|XP_002928122.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 2
           [Ailuropoda melanoleuca]
          Length = 706

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 129/422 (30%), Positives = 212/422 (50%), Gaps = 18/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 270 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 329

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             + +          ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 330 AHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGH 389

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  ++ LV+DEADRMLDMGF P ++      
Sbjct: 390 SIRQIVQGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCP 449

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       +    QYSK
Sbjct: 450 GMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSK 509

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 510 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 567

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 568 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 627

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L+     +   LE+I  + +      +         D RK
Sbjct: 628 PESDNH------LAQPLVKVLSDAQQDVPAWLEEIAFSTYVPGFSGSARGNVFASVDTRK 681

Query: 411 KN 412
             
Sbjct: 682 GK 683


>gi|291412972|ref|XP_002722747.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Oryctolagus
           cuniculus]
          Length = 483

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 111/377 (29%), Positives = 196/377 (51%), Gaps = 8/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 97  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L+    +    + +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 157 RLDL---KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 214 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK    F+ +  +           T++           ++       L 
Sbjct: 274 LLYSATFPLSVQK----FMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLF 329

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 330 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 389

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 390 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +  ++  
Sbjct: 450 EEQLGTEIKPIPSNIDK 466


>gi|149428666|ref|XP_001516184.1| PREDICTED: similar to DDX6 protein [Ornithorhynchus anatinus]
          Length = 444

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 111/377 (29%), Positives = 196/377 (51%), Gaps = 8/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 58  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 117

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L+    +    + +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 118 RLDL---KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 174

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 175 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 234

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK    F+ +  +           T++           ++       L 
Sbjct: 235 LLYSATFPLSVQK----FMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLF 290

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 291 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 350

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 351 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 410

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +  ++  
Sbjct: 411 EEQLGTEIKPIPSNIDK 427


>gi|148693657|gb|EDL25604.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6, isoform CRA_a [Mus
           musculus]
          Length = 485

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 111/377 (29%), Positives = 196/377 (51%), Gaps = 8/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 99  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 158

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L+    +    + +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 159 RLDL---KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 215

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 216 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 275

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK    F+ +  +           T++           ++       L 
Sbjct: 276 LLYSATFPLSVQK----FMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLF 331

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 332 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 391

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 392 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 451

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +  ++  
Sbjct: 452 EEQLGTEIKPIPSNIDK 468


>gi|57085923|ref|XP_536551.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX6
           (DEAD-box protein 6) (ATP-dependent RNA helicase p54)
           (Oncogene RCK) isoform 1 [Canis familiaris]
 gi|73954674|ref|XP_849975.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX6
           (DEAD-box protein 6) (ATP-dependent RNA helicase p54)
           (Oncogene RCK) isoform 2 [Canis familiaris]
 gi|126326574|ref|XP_001370626.1| PREDICTED: similar to DDX6 protein [Monodelphis domestica]
 gi|149716584|ref|XP_001503067.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Equus
           caballus]
 gi|296216344|ref|XP_002754541.1| PREDICTED: probable ATP-dependent RNA helicase DDX6-like
           [Callithrix jacchus]
 gi|301791568|ref|XP_002930752.1| PREDICTED: probable ATP-dependent RNA helicase DDX6-like
           [Ailuropoda melanoleuca]
 gi|281351767|gb|EFB27351.1| hypothetical protein PANDA_021316 [Ailuropoda melanoleuca]
          Length = 483

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 111/377 (29%), Positives = 196/377 (51%), Gaps = 8/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 97  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L+    +    + +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 157 RLDL---KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 214 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK    F+ +  +           T++           ++       L 
Sbjct: 274 LLYSATFPLSVQK----FMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLF 329

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 330 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 389

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 390 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +  ++  
Sbjct: 450 EEQLGTEIKPIPSNIDK 466


>gi|164664518|ref|NP_004388.2| probable ATP-dependent RNA helicase DDX6 [Homo sapiens]
 gi|114640683|ref|XP_508798.2| PREDICTED: probable ATP-dependent RNA helicase DDX6 isoform 2 [Pan
           troglodytes]
 gi|332208418|ref|XP_003253300.1| PREDICTED: probable ATP-dependent RNA helicase DDX6 [Nomascus
           leucogenys]
 gi|332837881|ref|XP_003313402.1| PREDICTED: probable ATP-dependent RNA helicase DDX6 isoform 1 [Pan
           troglodytes]
 gi|116241327|sp|P26196|DDX6_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX6; AltName:
           Full=ATP-dependent RNA helicase p54; AltName: Full=DEAD
           box protein 6; AltName: Full=Oncogene RCK
 gi|40675584|gb|AAH65007.1| DDX6 protein [Homo sapiens]
 gi|261858306|dbj|BAI45675.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [synthetic construct]
 gi|312152252|gb|ADQ32638.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [synthetic construct]
          Length = 483

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 111/377 (29%), Positives = 196/377 (51%), Gaps = 8/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 97  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L+    +    + +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 157 RLDL---KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 214 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK    F+ +  +           T++           ++       L 
Sbjct: 274 LLYSATFPLSVQK----FMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLF 329

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 330 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 389

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 390 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +  ++  
Sbjct: 450 EEQLGTEIKPIPSNIDK 466


>gi|157817692|ref|NP_001102762.1| hypothetical protein LOC500988 [Rattus norvegicus]
 gi|149041488|gb|EDL95329.1| rCG58047 [Rattus norvegicus]
          Length = 483

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 111/377 (29%), Positives = 196/377 (51%), Gaps = 8/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 97  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L+    +    + +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 157 RLDL---KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 214 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK    F+ +  +           T++           ++       L 
Sbjct: 274 LLYSATFPLSVQK----FMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLF 329

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 330 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 389

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 390 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +  ++  
Sbjct: 450 EEQLGTEIKPIPSNIDK 466


>gi|219804752|ref|NP_001137339.1| probable ATP-dependent RNA helicase DDX6 [Bos taurus]
 gi|296480110|gb|DAA22225.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Bos taurus]
          Length = 483

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 111/377 (29%), Positives = 196/377 (51%), Gaps = 8/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 97  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L+    +    + +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 157 RLDL---KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 214 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK    F+ +  +           T++           ++       L 
Sbjct: 274 LLYSATFPLSVQK----FMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLF 329

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 330 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 389

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 390 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +  ++  
Sbjct: 450 EEQLGTEIKPIPSNIDK 466


>gi|6681159|ref|NP_031867.1| probable ATP-dependent RNA helicase DDX6 [Mus musculus]
 gi|161016793|ref|NP_851841.2| probable ATP-dependent RNA helicase DDX6 [Mus musculus]
 gi|161016795|ref|NP_001104296.1| probable ATP-dependent RNA helicase DDX6 [Mus musculus]
 gi|1709532|sp|P54823|DDX6_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX6; AltName:
           Full=ATP-dependent RNA helicase p54; AltName: Full=DEAD
           box protein 6; AltName: Full=Oncogene RCK homolog
 gi|940408|dbj|BAA09088.1| RCK [Mus musculus]
 gi|18203917|gb|AAH21452.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Mus musculus]
 gi|74138164|dbj|BAE28578.1| unnamed protein product [Mus musculus]
 gi|148693659|gb|EDL25606.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6, isoform CRA_c [Mus
           musculus]
          Length = 483

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 111/377 (29%), Positives = 196/377 (51%), Gaps = 8/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 97  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L+    +    + +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 157 RLDL---KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 214 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK    F+ +  +           T++           ++       L 
Sbjct: 274 LLYSATFPLSVQK----FMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLF 329

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 330 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 389

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 390 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +  ++  
Sbjct: 450 EEQLGTEIKPIPSNIDK 466


>gi|458727|dbj|BAA04482.1| RCK [Homo sapiens]
 gi|189053803|dbj|BAG36055.1| unnamed protein product [Homo sapiens]
          Length = 472

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 111/377 (29%), Positives = 196/377 (51%), Gaps = 8/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 86  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 145

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L+    +    + +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 146 RLDL---KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 202

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 203 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 262

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK    F+ +  +           T++           ++       L 
Sbjct: 263 LLYSATFPLSVQK----FMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLF 318

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 319 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 378

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 379 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 438

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +  ++  
Sbjct: 439 EEQLGTEIKPIPSNIDK 455


>gi|187921780|ref|YP_001890812.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phytofirmans PsJN]
 gi|187720218|gb|ACD21441.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 479

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 170/470 (36%), Positives = 248/470 (52%), Gaps = 16/470 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  + D  Y  PTP+Q+K IP VL  +DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIDPLLRNLQDLNYQTPTPVQVKAIPAVLSGNDVMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +    V   R    +L PTRELA QV  +F  YGK  +L      GG+    Q  K
Sbjct: 61  QRLVQHGPEVSSNRARVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFERELNAVFAALPAQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT TD+++ ++   L+ P  I V+ P++TA  I            K    L   
Sbjct: 181 QTLLFSATFTDDIRTMAAGILRGPVNISVSPPNATASRI---KQWVVPVDKKNKPDLFMH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +++  ++ ++F   +  V  L   L+K G+SV  IHG+  Q +R++ L  FK G + +
Sbjct: 238 LVAENNWEHALVFVKTRNGVDYLAAILDKAGYSVDTIHGDKPQPARLRALERFKTGEVSM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI ++  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDNLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLEKI--DIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           AIE LI + +  +   G  +    P       I +     K   +PQ + G         
Sbjct: 358 AIEALIRQTLRREEEPGFEAEHRVPQTSATGQIIKKPKKPKKPKVPQAAPGAV----QAL 413

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
           S+K    + ES++    Q  +  +   SL        F + K R K   K
Sbjct: 414 SKKPRPQIDESKRKPAAQGAVAASKGTSLSSNS---PFAMQKPRSKPASK 460


>gi|186684628|ref|YP_001867824.1| DEAD/DEAH box helicase domain-containing protein [Nostoc
           punctiforme PCC 73102]
 gi|186467080|gb|ACC82881.1| DEAD/DEAH box helicase domain protein [Nostoc punctiforme PCC
           73102]
          Length = 509

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 134/371 (36%), Positives = 208/371 (56%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LG+S + V  +   G+ +PT IQ++ IP +L   DV G +QTGTGKTA+F LP+L
Sbjct: 3   LSFQELGISQERVAQLEKIGFTEPTNIQVQAIPQLLGGRDVVGQSQTGTGKTAAFSLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  +  V+     +L PTRELA QV D   ++  +  L V  + GG   + Q  +L 
Sbjct: 63  ERLDINQKAVQAI---VLTPTRELAMQVHDAIAQFIGDEGLRVLAIYGGQSIDRQMLQLR 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGR++D  +RG L ++ ++  V+DEAD ML MGFI  +  I S  P  RQT
Sbjct: 120 RGVHMVVGTPGRVIDLLDRGCLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPVDRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++ +   FL++P  + V  P +    I          ++K  A   Q + 
Sbjct: 180 ALFSATMPPSIRMLVNKFLRSPATVTVEQPKAAPNKINQVAYLIPRHWTK--AKALQPIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  +IF   ++    L   L+  G SV   HG++ Q++R ++L  F+   ++ +V
Sbjct: 238 EMEDPETALIFVRTRRTAAELTSQLQGAGHSVDEYHGDLSQQARERLLVRFRNRQVRWVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV NFD+P+  E Y+HRIGRTGRAG+ G A +LV   + +     
Sbjct: 298 ATDIAARGLDVDQLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQTF 357

Query: 361 EKLIEKKVDWL 371
           E+   +    L
Sbjct: 358 ERHNRQSWQLL 368


>gi|255021847|ref|ZP_05293857.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus ATCC
           51756]
 gi|254968671|gb|EET26223.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus ATCC
           51756]
          Length = 429

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 160/425 (37%), Positives = 241/425 (56%), Gaps = 20/425 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL P +  A +  GY + TPIQ + IP +L+ HD+   AQTGTGKTA+F LP+L  
Sbjct: 20  FTELGLDPALCAAAVARGYEQATPIQARAIPEILKGHDILAAAQTGTGKTAAFALPILHR 79

Query: 63  LEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L +       R  R LIL PTRELAAQV DN   Y     +   +LIGG+    Q ++L 
Sbjct: 80  LARDPVSSGPRPVRALILVPTRELAAQVEDNIRLYRGQMPVRSLMLIGGVKIGPQMEQLR 139

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GAD+++ TPGR+LDH  +  L ++ +E LV+DEADRMLDMGFI  I+ I  ++P  RQ 
Sbjct: 140 NGADIVVATPGRLLDHLQQRSLRLDRVETLVLDEADRMLDMGFIRDIRRIIGMLPAKRQN 199

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT + E+++++E  L  P  +EV   ++T ++I    +    +  +        L 
Sbjct: 200 LLFSATFSPEIRQLAEGLLHQPIAVEVTPANATVDSITQRVIRVDQERKRDL---LLHLM 256

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF   K     L   +E++GFS  AIHGN  Q +R + L+ FK G+++ +V
Sbjct: 257 DAHQWHQVLIFTRTKHGADRLARQMEREGFSAMAIHGNKSQGARTRALAEFKSGSLRALV 316

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  +  V NF++P  AE+Y+HRIGRTGRAG  G+A +LV+ E+   + A+
Sbjct: 317 ATDIAARGIDIQRLPRVVNFELPQVAEDYVHRIGRTGRAGEDGEAVSLVSGEERSQLQAV 376

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+L+ ++ D               ++      A+ + P          R  + ++Q S  
Sbjct: 377 ERLLRRRFD---------------LEQVPGFEAKGHGPDRGVGKPVPARGHSLAAQGSRR 421

Query: 421 PLKES 425
           P +++
Sbjct: 422 PRRQA 426


>gi|223993165|ref|XP_002286266.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977581|gb|EED95907.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 480

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 119/389 (30%), Positives = 187/389 (48%), Gaps = 8/389 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D   S  +   +  AG+ +PT IQ +  P+ +   D+  +A+TG+GKT  F+LP  
Sbjct: 46  IEFGDAPFSDSIQKTLKSAGFERPTFIQSQAWPIAINGSDMICVAKTGSGKTCGFLLPSF 105

Query: 61  TILEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               + +A        P  L+L PTRELA Q+ D  +K+G+   +      GG P  AQ 
Sbjct: 106 HQYFQSKATANKGGKGPIMLVLAPTRELACQILDETQKFGRPIGIRSVCCYGGSPKYAQI 165

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             LERG + +I TPGR+ D     K  ++N++ +V+DEADRMLDMGF P I++I   VP 
Sbjct: 166 AALERGVECVIATPGRLNDLIEMKKANLSNVKFVVLDEADRMLDMGFEPQIRSIMGSVPD 225

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           +        + T   +     F      I++N                    S+   + +
Sbjct: 226 STNRQTLLFSATWPKEIQRLAFDFLSDPIQINVGEINVLNANKDITQKIMMCSEDDKIDR 285

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                 D   + +I    KK V +   +                ++     + N  +   
Sbjct: 286 LKEILTDLKHSKVIVFVGKKYVAHELANQLWDEGFAVDSLHGDREQWERTKVINAFKQGT 345

Query: 297 -QLMVASDLAARGLDIPDVGHVFNFDVP---NRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            +L++A+D+AARGLD+ DVG V N+D+P   N AE+YIHRIGRTGRAG  G A+T+    
Sbjct: 346 LRLLIATDVAARGLDVKDVGVVVNYDMPVGVNGAEDYIHRIGRTGRAGAKGIAYTMFTPG 405

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           D K    + +++EK    +  +L ++  P
Sbjct: 406 DKKLATQLVEILEKAEQEVPAELKAMARP 434


>gi|256017200|ref|NP_001006319.2| probable ATP-dependent RNA helicase DDX6 [Gallus gallus]
          Length = 483

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 110/377 (29%), Positives = 195/377 (51%), Gaps = 8/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 97  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L+    +    + +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 157 RLDL---KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   + +++++V+DEA+++L   F+  +++I   +P  RQ 
Sbjct: 214 DTVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEANKLLSQDFVQIMEDIILTLPKNRQI 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK    F+ +  +           T++           ++       L 
Sbjct: 274 LLYSATFPLSVQK----FMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLF 329

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 330 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 389

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 390 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +  ++  
Sbjct: 450 EEQLGTEIKPIPSNIDK 466


>gi|26344027|dbj|BAC35670.1| unnamed protein product [Mus musculus]
          Length = 483

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 111/377 (29%), Positives = 195/377 (51%), Gaps = 8/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 97  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L+    +    + +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 157 RLDL---KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   ++++ ++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 214 DTVHVVIATPGRILDLIKKGVAKVDHVRMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK    F+ +  +           T++           ++       L 
Sbjct: 274 LLYSATFPLSVQK----FMNSHLQKPYEINLMEELTLKGVTEYYAYVTERQKVHCLNTLF 329

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 330 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 389

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 390 CTDLFTRGIDIQAVNVVMNFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +  ++  
Sbjct: 450 EEQLGTEIKPIPSNIDK 466


>gi|293401901|ref|ZP_06646041.1| DEAD/DEAH box family ATP-dependent RNA helicase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304559|gb|EFE45808.1| DEAD/DEAH box family ATP-dependent RNA helicase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 580

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 212/371 (57%), Gaps = 10/371 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L +S +++ AV + GY   T IQ ++IP +L+  DV G + TGTGKTA+F +P + 
Sbjct: 3   TFNELPISSEIMKAVEEMGYENATDIQAQSIPCILEGKDVLGRSNTGTGKTAAFGIPAIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            +  G    + P  LI+ PTREL  QVA    K+ K    + +  + GG P + Q + L+
Sbjct: 63  KVIPGN---KFPNALIICPTRELVTQVATELRKFSKYKEGVKIVPIYGGQPIDRQIQLLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGRI+DH NR  L + ++ ++++DEAD ML+MGF   I+ I S++P   + 
Sbjct: 120 RGCGIVVGTPGRIMDHLNRRTLKLQDVNMIILDEADEMLNMGFKEDIEEILSMMPADNEH 179

Query: 181 LL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
               FSAT    + K++E F ++P R+E+ +   T +T+E  +               ++
Sbjct: 180 QTILFSATWPQAILKITEQFQKDPVRVEIKSSQRTIDTVEQIYYEAPRGKKANA---LRV 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +       +IFCN KK V  LC  L K      ++HG++ Q  R +++  F+ GT  +
Sbjct: 237 LLNHYDPDLCMIFCNTKKMVDELCEELNKHDIKATSLHGDMKQEFRSRVMEQFRNGTSPI 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHI 357
           ++A+D+AARG+D+ D+  V NFD+P   E YIHR+GRTGRAG+ G A TL++  +    I
Sbjct: 297 LIATDVAARGIDVDDIDLVVNFDIPQDMEYYIHRVGRTGRAGKKGLAITLISGGKQRGAI 356

Query: 358 DAIEKLIEKKV 368
             + +  +  +
Sbjct: 357 KDVIRYTKTNI 367


>gi|118404788|ref|NP_001072584.1| probable ATP-dependent RNA helicase ddx6 [Xenopus (Silurana)
           tropicalis]
 gi|123905703|sp|Q0IHV9|DDX6_XENTR RecName: Full=Probable ATP-dependent RNA helicase ddx6; AltName:
           Full=DEAD box protein 6
 gi|114108232|gb|AAI22945.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Xenopus (Silurana)
           tropicalis]
 gi|171847243|gb|AAI61499.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Xenopus (Silurana)
           tropicalis]
          Length = 481

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 112/377 (29%), Positives = 196/377 (51%), Gaps = 8/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 96  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 155

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            L+    +    + +++ PTRELA QV+    +  K+   + V    GG        +L+
Sbjct: 156 RLDL---KKDCIQAMVIVPTRELALQVSQICIQVSKHMGGVKVMATTGGTNLRDDIMRLD 212

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++I+++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 213 DTVHVVIATPGRILDLIKKGVAKVDHIQMIVLDEADKLLSQDFVQIMEDIIITLPKNRQI 272

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK    F+ +  +           T++           ++       L 
Sbjct: 273 LLYSATFPLSVQK----FMTSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLF 328

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 329 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 388

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 389 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 448

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +   +  
Sbjct: 449 EEQLGTEIKPIPSSIDK 465


>gi|120435454|ref|YP_861140.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Gramella
           forsetii KT0803]
 gi|117577604|emb|CAL66073.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Gramella
           forsetii KT0803]
          Length = 597

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 214/373 (57%), Gaps = 9/373 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLP 58
           M+ F  LGL   ++ A+ D G+  P+ +Q K+IP++L++  D+  +AQTGTGKTA+F  P
Sbjct: 1   MNAFQKLGLDADLLKAIEDMGFETPSEVQEKSIPILLEKETDLVSLAQTGTGKTAAFGFP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNK 117
           ++  ++    + +    LIL PTREL  Q+ +  + Y K       + + G      Q +
Sbjct: 61  LIQKIDANSKKTQA---LILSPTRELCLQITNEIKNYSKYKKSLNVVAVYGGASITDQAR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +ERGA +++ TPGR+ D   R    +++I   V+DEAD ML+MGF   I+ I S  P  
Sbjct: 118 SIERGAQIIVATPGRMQDMIRRRLANISSIGYCVLDEADEMLNMGFYEDIKTILSHTPKE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           ++T LFSATM  E+ K+++ F+ +P  I V + +     + H +        +      +
Sbjct: 178 KKTWLFSATMPKEVAKIAKKFMTDPIEITVGSKNKGTSNVSHEYYLVNH---RNRYDALK 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   +     +IFC  K++   +   L + G++  A+HG++ Q  R  ++ +F+   IQ
Sbjct: 235 RLADANPEIFSVIFCRTKRDTQKVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRSRQIQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ D+ HV N+ +P+  E Y HR GRTGRAG+ G +  +++K +++ I
Sbjct: 295 MLVATDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKQGVSMVIISKSEVRKI 354

Query: 358 DAIEKLIEKKVDW 370
             +EK+I++K + 
Sbjct: 355 RTVEKIIQQKFEE 367


>gi|281337523|gb|EFB13107.1| hypothetical protein PANDA_018037 [Ailuropoda melanoleuca]
          Length = 491

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 129/420 (30%), Positives = 212/420 (50%), Gaps = 18/420 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 80  LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 139

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             + +          ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 140 AHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGH 199

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  ++ LV+DEADRMLDMGF P ++      
Sbjct: 200 SIRQIVQGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCP 259

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       +    QYSK
Sbjct: 260 GMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSK 319

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 320 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 377

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 378 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 437

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L+     +   LE+I  + +      +         D RK
Sbjct: 438 PESDNH------LAQPLVKVLSDAQQDVPAWLEEIAFSTYVPGFSGSARGNVFASVDTRK 491


>gi|323343014|ref|ZP_08083245.1| ATP-dependent RNA helicase DbpA [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463078|gb|EFY08273.1| ATP-dependent RNA helicase DbpA [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 487

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 141/413 (34%), Positives = 231/413 (55%), Gaps = 16/413 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G+   ++ ++   GY  PT +Q + IP VL   ++   +QTG+GKTASF +P+  
Sbjct: 4   TFKNYGIDDSILKSIQYLGYEAPTDVQQEVIPAVLSGKNIVVQSQTGSGKTASFGIPICH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +E    + R P+ L+L PTRELA Q+ ++    G+   L V  L G   FE Q ++L+ 
Sbjct: 64  QVEW---KKRKPQVLVLAPTRELAIQIQEDLFNLGRFKRLKVEALFGRSSFEKQAQRLKE 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LDH  R  + +++IE LVIDEAD M +MGFI  I +I + +P   Q L
Sbjct: 121 MTHILVATPGRLLDHMARETVDLSHIETLVIDEADEMFNMGFIDQITSIINRIPKKSQKL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM + ++ +   +++NP+ I++ T S   + I+  +               + +  
Sbjct: 181 LFSATMPERVKDLCTLYIKNPQWIDIETESRVEDRIDERYYIVDYPDKMAL---LESVLI 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFCN K+ V ++ + +E  G  V  +HG ++QR R K+L++FK G  + +VA
Sbjct: 238 TENPDSSIIFCNTKEQVESVTNFMEDLGCKVDTLHGGMEQRFRTKVLADFKHGLFRYLVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI DV  V NFDVP   E+Y HR+GRT R  ++GKA T  +  ++K ++ I 
Sbjct: 298 TDVAARGLDIDDVSLVVNFDVPENTESYTHRVGRTARVDKYGKAVTFASPYEMKFMNLI- 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHN---HARKNNPIPQKSTGFDRRKK 411
                 ++  + +L  +  P + +  A+ +     R   P  +K    D +++
Sbjct: 357 ------INDTDHELQKVVKPGQSLVDARRDAFEAKRDRKPKVKKDKAHDFKQE 403


>gi|90408655|ref|ZP_01216807.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
 gi|90310231|gb|EAS38364.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
          Length = 418

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 139/403 (34%), Positives = 211/403 (52%), Gaps = 8/403 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L   ++ A+ + G+   TPIQ  ++P+ L   D+ G AQTGTGKT +F+  +  
Sbjct: 10  KFIDLPLQESLLSALTELGFEYCTPIQAISLPITLLGKDIAGQAQTGTGKTLAFLPAVFN 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 E        PR +IL PTRELA Q+  +   + K+ NL + L  GG   E Q  
Sbjct: 70  HLLINKEPENRSKDQPRAIILAPTRELAIQIHKDAMVFAKHTNLRLGLAYGGEKVEIQRN 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KLE+G D+LI T GRI+D   +G + +N+I+ +V+DEADRM D+GFI  I+ +   +P +
Sbjct: 130 KLEKGVDILIGTTGRIIDFVKQGTINLNSIQSVVLDEADRMFDLGFIKDIRYLFRRMPES 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
              L    + T   +     F        +        +        Y   ++K   L  
Sbjct: 190 NLRLNMLFSATLSHKVQELAFEHMNSPEHIQIEPERMTSENISEELFYPSNAEK-MHLLL 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++  +  I+F N K     +   L   G     + G++ Q+ R KILS F +G I 
Sbjct: 249 TLMEEEWPEKAIVFANTKHTCEKVWGYLAGDGLRAGLLTGDVPQKKREKILSQFTDGDID 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG+ G+A TL  ++   ++
Sbjct: 309 VLVATDVAARGLHIPKVSHVFNFDLPDDCEDYVHRIGRTGRAGQKGQAITLACEKYAFNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ---HNHARKNN 397
             IE  I+  +     D  +L   L K+ + +   HN+ RK++
Sbjct: 369 PEIEAFIKHSIPVSEFDRDALVQTLPKMIVTKYKAHNNRRKDS 411


>gi|332016384|gb|EGI57297.1| Putative ATP-dependent RNA helicase DDX49 [Acromyrmex echinatior]
          Length = 461

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 118/419 (28%), Positives = 199/419 (47%), Gaps = 12/419 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L+  ++      G  KPTPIQ   IP +L   D  G A+TG+GKT +FVLP+L  
Sbjct: 13  FSDLKLNSWLLAQCESMGLKKPTPIQQNCIPRILMGEDCIGCAKTGSGKTLAFVLPILQK 72

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L            L+L PTRELA Q+AD F   GK  NL   +++GG+    Q  +L + 
Sbjct: 73  L---CEDPYGIFALVLTPTRELAFQIADQFTAIGKAINLKKCVIVGGMDMMVQGLELSKR 129

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ DH +            ++ +    L  G               ++ +L
Sbjct: 130 PHIVVATPGRLADHLDSCDTFSLQKIKFLVLDEADRLLGGHFDGQLKTIFAALPKQKQVL 189

Query: 183 FSATMT----DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           F +       D++++++   +   +  +    ++  E  +   +            + + 
Sbjct: 190 FFSATMTDTLDKVKQIASAEVFTWQEEDDFGIATVKELDQRYVLCPKDVLDSYLVEVIKT 249

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            ++ +   + +IF +  K    L   L   GF+  A+H  I Q+ R+  L+ FK   +Q+
Sbjct: 250 FRTTNENGSIMIFTDTCKYCQLLSMMLNNVGFTNVALHAMIKQKERLAALNKFKSNHVQI 309

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLDIP V  + N  +PN  + YIHR+GRT RAG++G + +L+   DIK + 
Sbjct: 310 LIATDVAARGLDIPTVQLIINHVIPNVPKEYIHRVGRTARAGKNGMSISLITPNDIKLLH 369

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           AIE +I  K+     D   +   L ++ +A     ++   I    T F  +K     +K
Sbjct: 370 AIENVIGIKLTEYKIDDKKIITILTQVSVA-----KRTAEIKLDETDFYEKKMINKQKK 423


>gi|308048143|ref|YP_003911709.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307630333|gb|ADN74635.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 444

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 123/417 (29%), Positives = 198/417 (47%), Gaps = 6/417 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L  +++  V   G+ + T IQ K IP  +   D+   ++TG+GKT +F+LP +
Sbjct: 1   MQFSQLALDKRLLATVDHLGFAEATEIQQKAIPTAIAGKDLLASSRTGSGKTLAFLLPAM 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L + +    R PR LIL PTRELA QV         N +    L++GG  F  Q+K L
Sbjct: 61  QRLIRSKPLSKRDPRVLILAPTRELAKQVYGQLRLVVANTSYKSLLILGGEDFNQQSKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH   G L ++ +E+L++DEADRMLD+GF   +Q I       ++
Sbjct: 121 ARDPHFVVATPGRLADHLEHGHLYLHGLEMLILDEADRMLDLGFADQLQAIHKAADHRKR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D                 +   S      +      ++ +        + L
Sbjct: 181 QTLMFSATLDHAAVNQFGAQLLNNPTRIRIDSEAEIHSDIHHRMLFSDHLDHKEAQLKAL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   K  I+F   + +   L   L + G+S  A+ G ++Q +R +I+ +F  G  +++
Sbjct: 241 LEKQDFKQLILFTATRGDTDRLAVLLSEWGYSTLALSGELNQTARSQIMQDFAAGKAKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+A+RGLDIP V HV NFD+P   E Y+HR+GRTGRAG  G AF+LV  +D      
Sbjct: 301 ITTDVASRGLDIPQVSHVVNFDLPKHPEEYVHRVGRTGRAGAKGDAFSLVGPKDWPSFKK 360

Query: 360 IEKLIEK-----KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           +E  +++      ++ L      L    ++        AR             + K+
Sbjct: 361 LEAFLQQPLAFEAIEGLEAKFKGLVEKPKRGPAKAKPTARSGKKTGPAKRAPAKVKR 417


>gi|115374548|ref|ZP_01461828.1| DbpA RNA binding domain family [Stigmatella aurantiaca DW4/3-1]
 gi|310823766|ref|YP_003956124.1| ATP-dependent helicase, dead/deah-box family [Stigmatella
           aurantiaca DW4/3-1]
 gi|115368418|gb|EAU67373.1| DbpA RNA binding domain family [Stigmatella aurantiaca DW4/3-1]
 gi|309396838|gb|ADO74297.1| ATP-dependent helicase, DEAD/DEAH-box family [Stigmatella
           aurantiaca DW4/3-1]
          Length = 812

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 132/395 (33%), Positives = 202/395 (51%), Gaps = 10/395 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL LS  +  A+ + GY  PTP+Q K     ++  D+   ++TGTGKTA+F LP+L
Sbjct: 29  VSFEDLHLSEPLRRAIAERGYTHPTPVQAKAFQPAMEGRDLIVRSKTGTGKTAAFGLPLL 88

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     RVR    LIL PTRELA QVAD     GK   + VA + GG   + Q   LE
Sbjct: 89  EKIPADERRVR---ALILCPTRELALQVADELRALGKYKGVKVAAIYGGASMKQQEDALE 145

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGR+ DH  RG L ++  +  V+DEAD ML+ GF   +  I   +P  RQ 
Sbjct: 146 EGTPIIVGTPGRVFDHIGRGNLKLDACDHAVLDEADEMLNQGFYEEVTRILDRLPKNRQV 205

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++Q +   +  N + + ++    T E I H        + K        + 
Sbjct: 206 LLFSATVPTDIQNLIARYTTNAETLLLSGDVFTVEHIHHIRYDVSDAFPKPR--NLIYVL 263

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    N IIFCN + +   +   L + GF    ++G++ Q+ R +++   K G +  MV
Sbjct: 264 EKAEPPNAIIFCNTRDDTALVTAVLNRNGFDAELLNGDLPQKERERVMGKVKRGEVAFMV 323

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  + +V N+ +P     Y+HR+GRTGR G  G A  L +  ++     +
Sbjct: 324 ATDIAARGIDISGLEYVINYSLPEDPAVYLHRVGRTGRIGNKGTAINLFSGRELATYTTL 383

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           EK    K +        +  P E + +    H R+
Sbjct: 384 EKKYGIKFEK-----QEMPAPEEAMRLWTERHVRE 413


>gi|254452993|ref|ZP_05066430.1| ATP-dependent RNA helicase RhlE [Octadecabacter antarcticus 238]
 gi|198267399|gb|EDY91669.1| ATP-dependent RNA helicase RhlE [Octadecabacter antarcticus 238]
          Length = 439

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 149/366 (40%), Positives = 220/366 (60%), Gaps = 5/366 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI--L 63
           LGL+P+++  +   G V PTPIQ + IP  +   DV G+A+TG+GKTA+F LPM+ +   
Sbjct: 2   LGLAPRLIAELKSQGIVDPTPIQAQAIPHAMNGRDVMGLAKTGSGKTAAFGLPMIDMLLK 61

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
           E+G+   +  R LIL PTRELA Q+ +N E Y K  +L   L++GG     Q +KLERG 
Sbjct: 62  EQGKPEGKTARALILAPTRELAKQIQENLEAYTKGTHLKTMLVVGGAGITGQIRKLERGV 121

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
           D+L+ TPGR++D   R  + + + + LV+DEAD+MLDMGFI  ++ I  L+   RQT+LF
Sbjct: 122 DLLVATPGRLIDLLERRAVRLGDTKFLVLDEADQMLDMGFIHALRQIAPLLAPERQTMLF 181

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM   + +++  FL+NP R++V+ P    E IE                    L  + 
Sbjct: 182 SATMPKLMAELAGAFLKNPMRVQVDAPGKPVERIEQSVHFVAKAAKTDL---LLELIDKH 238

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +  I+F   K     L   L  +GF   +IHGN  Q  R + +++FK G + ++VA+D
Sbjct: 239 RDERAIVFGRTKHGSEKLHKLLASKGFLSASIHGNKSQGQRDRAITDFKAGKVTILVATD 298

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARGLDIP+V HV+N+D+PN AENY+HRIGRT RAG  G A    A +++  +  I+K 
Sbjct: 299 VAARGLDIPEVKHVYNYDLPNVAENYVHRIGRTARAGADGMAIAFCAPDEMGELRDIQKA 358

Query: 364 IEKKVD 369
           ++  + 
Sbjct: 359 MKADIP 364


>gi|326933365|ref|XP_003212776.1| PREDICTED: probable ATP-dependent RNA helicase DDX6-like [Meleagris
           gallopavo]
 gi|82197804|sp|Q5ZKB9|DDX6_CHICK RecName: Full=Probable ATP-dependent RNA helicase DDX6; AltName:
           Full=DEAD box protein 6
 gi|53131507|emb|CAG31824.1| hypothetical protein RCJMB04_11n24 [Gallus gallus]
          Length = 483

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 111/377 (29%), Positives = 195/377 (51%), Gaps = 8/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 97  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L+    +    + +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 157 RLDL---KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   + +++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 214 DTVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK    F+ +  +           T++           ++       L 
Sbjct: 274 LLYSATFPLSVQK----FMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLF 329

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 330 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 389

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 390 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +  ++  
Sbjct: 450 EEQLGTEIKPIPSNIDK 466


>gi|73969107|ref|XP_531736.2| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 1 [Canis
           familiaris]
          Length = 664

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 136/393 (34%), Positives = 206/393 (52%), Gaps = 17/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI---------- 170
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I          
Sbjct: 214 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRVCKTD 273

Query: 171 ----TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                   P  RQTL++SAT   E+++++E+FL++  +I V     +A       V    
Sbjct: 274 DTLSLFPFPPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCM 333

Query: 227 QYSKKCALLQQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
           +  K   L+Q + +   +     IIF   K+   +L   + + G+    IHG+  Q  R 
Sbjct: 334 ESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERD 393

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
            +L+ F+ G   +++A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A
Sbjct: 394 WVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTA 453

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           +T     ++K    + K++E+    +N  L  L
Sbjct: 454 YTFFTPGNLKQARELIKVLEEANQAINPKLMQL 486


>gi|124810293|ref|XP_001348829.1| helicase 45 [Plasmodium falciparum 3D7]
 gi|23497730|gb|AAN37268.1| helicase 45 [Plasmodium falciparum 3D7]
 gi|83272531|gb|ABC00776.1| eIF4A-like [Plasmodium falciparum]
 gi|112434012|gb|ABI18354.1| eIF4A-like [Plasmodium falciparum]
          Length = 398

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 199/378 (52%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL+ K++  +   G+ KP+ IQ + I  +L  +D  G AQ+GTGKTA+FV+  L 
Sbjct: 24  TFDALGLNEKLLRGIYSYGFEKPSAIQQRGIKPILNGYDTIGQAQSGTGKTATFVISSLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++          + LIL PTRELA Q+       G    +     +GG        KL++
Sbjct: 84  LINYDY---VACQALILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDIDKLKQ 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D  ++  L ++ +++ ++DEAD ML  GF   I  +   +    Q  
Sbjct: 141 GVHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQVA 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+ +++  F+++PK I V     T E I   +VA   +  K   L       
Sbjct: 201 LFSATMPQEILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLCDL--YE 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   II+CN +K V  L   +  + F+V  +HG++DQ+ R  I+  F+ G+ +++V 
Sbjct: 259 TLTITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVT 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK--EDIKHIDA 359
           +DL ARG+D+  V  V N+D+P   + YIHRIGR+GR GR G A   V    ++   +  
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPASPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDKLKK 378

Query: 360 IEKLIEKKVDWLNGDLSS 377
           IE     +++ +  +++ 
Sbjct: 379 IESYYSTQIEEMPLEVAD 396


>gi|332140339|ref|YP_004426077.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550361|gb|AEA97079.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 408

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 130/370 (35%), Positives = 196/370 (52%), Gaps = 4/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   +  A  D G+  PT IQ   IP  L   D+   A TGTGKTA+F+LP  
Sbjct: 1   MTFEELELDDALCHAAADMGFEAPTNIQELVIPHALDGRDILASAPTGTGKTAAFLLPAC 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L+  R +    R LIL PTRELA QV +      K+  L   ++ GGI +    + L
Sbjct: 61  QFLLDYPRKQPGATRILILTPTRELALQVYEQAVAITKHTQLVCGVITGGINYGTDKETL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D+L+ TPGR+L+H  +      +IE L++DEADRMLDMGF   +  I +   + +Q
Sbjct: 121 SKNLDILVATPGRLLEHIEKEAADCRDIECLILDEADRMLDMGFSTVVNQIAAEARWRKQ 180

Query: 180 TLLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            LLFSAT     ++  + + L NP+ +E N        I   +        K+   L   
Sbjct: 181 NLLFSATLEGKGVKTFAHDILNNPEIVEANPSRKEKNKIHQWYHLADDMNHKQA--LLVN 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  Q+T  + ++F   +  +  L   L  Q   VC + G + Q  R   ++ FK G + +
Sbjct: 239 ILKQETTTSAVVFVKTRDRLQMLKDFLASQDIQVCWLQGEMPQDKRNAAMARFKNGEVPI 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+P+V HV NFD+P +A+ Y+HRIGRTGRAG  G A +LV   D + + 
Sbjct: 299 LLATDVAARGIDVPNVSHVINFDMPRKADIYVHRIGRTGRAGAKGTAISLVEAHDFEMVT 358

Query: 359 AIEKLIEKKV 368
              + + + +
Sbjct: 359 KAARYMGEPL 368


>gi|311032981|ref|ZP_07711071.1| putative ATP-dependent RNA helicase [Bacillus sp. m3-13]
          Length = 375

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 150/371 (40%), Positives = 216/371 (58%), Gaps = 7/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LG+   V  ++   G   PTPIQ +TIP VL+ HDV   AQTGTGKT +FVLP+L 
Sbjct: 3   DFLKLGIRKGVNHSLKSMGINAPTPIQERTIPAVLEGHDVIAQAQTGTGKTLAFVLPILE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++      +    LIL PTRELA Q+    +   +N +    L + G     +Q KKL+
Sbjct: 63  KVDVNNPETQA---LILTPTRELAHQITKEIKNLKENIDDLQVLAVYGGQDVNSQLKKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V++ TPGR+LDH  RG + ++ I +LVIDEAD+ML MGF+P I  IT+ +  +RQT
Sbjct: 120 GAQHVIVATPGRLLDHVRRGTIDLSTISMLVIDEADQMLLMGFLPDIDTITAEIFASRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ +E+  +++ +++ PK I++     T  +I H  V T  +  +   L      
Sbjct: 180 MLFSATIPNEIHALAKKYMKQPKHIQIAEKQVTVASINHYAVETTDRRKEGTMLHL---I 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      IIFC  K  V  L   L+ +G    A+HG+I Q  R + +  F+E  +Q +V
Sbjct: 237 KEHNPYLAIIFCRTKARVQKLTEVLKHEGVECEALHGDIPQSKRNRAMKWFREAKLQYLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV+N+D+P   E YIHR GRTGRA   G+A+TL A  D+  +  I
Sbjct: 297 ATDVAARGLDVEGVTHVYNYDIPQDLETYIHRTGRTGRASGSGEAYTLFAPRDVDFLQMI 356

Query: 361 EKLIEKKVDWL 371
           EK IE  ++ L
Sbjct: 357 EKGIEMPLEKL 367


>gi|227875859|ref|ZP_03993985.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243]
 gi|269977494|ref|ZP_06184466.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris 28-1]
 gi|307700011|ref|ZP_07637060.1| putative DEAD-box ATP-dependent RNA helicase CshA [Mobiluncus
           mulieris FB024-16]
 gi|227843607|gb|EEJ53790.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243]
 gi|269934410|gb|EEZ90972.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris 28-1]
 gi|307614772|gb|EFN93992.1| putative DEAD-box ATP-dependent RNA helicase CshA [Mobiluncus
           mulieris FB024-16]
          Length = 523

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 152/476 (31%), Positives = 234/476 (49%), Gaps = 45/476 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D G+ P++V A+ D G + P PIQ  T+P+ ++RHD+ G A+TGTGKT  F +P+L 
Sbjct: 33  TFSDFGVEPEIVAALADKGIIHPFPIQALTLPVAIERHDIIGQAKTGTGKTLGFAIPILH 92

Query: 62  ILEKGRARVRM-------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L+L PTRELA QVA        +    +  + GG+ F++
Sbjct: 93  DIIGPGDEGWDELPSPGAPQALVLLPTRELAKQVAAEIRAAASHRVARILEIYGGVGFDS 152

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L+ G +V++ TPGR++D    G+L +  +  LV+DEAD MLDMGF+P ++ + +  
Sbjct: 153 QIQSLKDGVEVVVGTPGRLIDLMKHGELQLKEVRTLVLDEADEMLDMGFLPDVEVLIAAT 212

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  R T+LFSATM   +  ++  ++  P  I    PS  ++T+       Y  +S     
Sbjct: 213 PPERHTMLFSATMPGPVVALARRYMYQPTHIRAADPSDDSKTVRQVHQFAYRVHSMNKEE 272

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +         IIF   K++   L   L  +GF+  AIHG+++Q +R + L  F+ G
Sbjct: 273 VVARILQAKNRGLTIIFTRTKRSCQRLADELTNRGFAAGAIHGDLNQSARERALRAFRHG 332

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV NF+ P   + YIHRIGRT RAG  G A T V  E +
Sbjct: 333 KVDVLVATDVAARGIDVDDVTHVINFECPEDEKTYIHRIGRTARAGHSGTAVTFVDWESV 392

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP---------QKSTG 405
                I + +E            L  P E    + H +A  N PI          +K  G
Sbjct: 393 TRWRVINRALEL----------GLENPTETYHTSAHLYADLNIPIDTPGYLPRSLRKRAG 442

Query: 406 FD------------------RRKKNYSSQKSH-IPLKESEKISKLQQDIQENDADS 442
            +                   R KN    K+   P  ++ K S   +D  + D   
Sbjct: 443 LNAEALEDLGGDSLGASRNGHRHKNRDHHKNRKRPTDKNAKSSHRAKDSGKKDGAK 498


>gi|192360552|ref|YP_001981465.1| ATP-dependent RNA helicase RhlB [Cellvibrio japonicus Ueda107]
 gi|190686717|gb|ACE84395.1| ATP-dependent RNA helicase RhlB [Cellvibrio japonicus Ueda107]
          Length = 439

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 130/419 (31%), Positives = 208/419 (49%), Gaps = 9/419 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LSP+++ A+ D G+   +PIQ +++P  LQ  DV G AQTGTGKTA+F+  ++  
Sbjct: 22  FHDFDLSPELMHAIADVGFKYCSPIQAQSLPHALQGKDVVGKAQTGTGKTAAFLAAIIDD 81

Query: 63  LEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L K     +      R L++ PTREL  Q+A++ +   K  +L +  L+GG+ +  Q ++
Sbjct: 82  LLKNPITEKRYAGEARALVIAPTRELVIQIAEDAKALCKYTDLKIHTLVGGMDYTKQQRR 141

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             E   D+L+ TPGR+LD      + ++ +E+LVIDEADRMLDMGFIP ++ I    P  
Sbjct: 142 LHETLVDILVATPGRLLDFCGNKDVYLDQLEVLVIDEADRMLDMGFIPQVRQIVRQTPHR 201

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
                   + T     V     Q   +         +          Y   +++   L  
Sbjct: 202 EDRQTLFFSAT-FTDDVHNLVQQWTYKPVTIEIEPESVANARVDQHVYLVSTEEKYTLLY 260

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  Q+  ++ I+F N++    +L   L + G     + G I Q  R+  L  FK G I+
Sbjct: 261 NLIQQEHAESMIVFANRRDECRDLYEKLLRHGIKAGLLSGEITQNKRVSTLDAFKNGDIK 320

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A RG+ I  + HV NF +P   E+Y+HRIGRTGRAG+ G + +   ++D   +
Sbjct: 321 VLVATDVAGRGIHISGISHVVNFTLPEEPEDYVHRIGRTGRAGKSGTSISFACEDDALRL 380

Query: 358 DAIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           + IEKL+ K +         L            ++H     N  +  +  G   R+  +
Sbjct: 381 EPIEKLLGKPIKCEQPPEILLLLPPELPALPPRSRHQERYSNRSVGNRPGGNRSRRPRH 439


>gi|71891896|ref|YP_277626.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
 gi|71796002|gb|AAZ40753.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 569

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 130/372 (34%), Positives = 215/372 (57%), Gaps = 6/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL+  +V  + D GY KP PIQI+ IP +L  +DV G+A TG+GKTA+FVLP+L 
Sbjct: 7   SFIDLGLNRYIVNVLHDVGYTKPLPIQIQCIPYLLAGYDVLGMAHTGSGKTAAFVLPLLH 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++         + LI+ PTRELA Q+      + K       + +  G  +  Q   L 
Sbjct: 67  NVDINN---SCSQGLIITPTRELAIQIGRVCSNFAKYMKKINVVTLYGGQSYGIQLSALN 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR++DH NRG   ++ ++ LVIDEAD ML MGF+  ++ I   +P  RQT
Sbjct: 124 KRPHIIVSTPGRLIDHLNRGTANLSQLKTLVIDEADEMLRMGFLEDVERIIKNIPVKRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT+   ++++S  F+ NPK + +++ +S    I   +   ++  +K  AL++    
Sbjct: 184 ALFSATLPMGIRRISYRFMNNPKEVFIHSNTSMCANIRQSYWLVHSGIAKHEALMR--FL 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     I+F   K   + +   LE+ G++  A++G+++Q  R + L   + G + +++
Sbjct: 242 ETEDFDAAIVFVRTKYATLEISEILERFGYNSAALNGDMNQTVRHQTLDRLRHGKLDILI 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V N+D+P  ++ YIHRIGRTGRAG  GK+   V  ++ + +  I
Sbjct: 302 ATDVAARGLDVHRISLVINYDIPINSDAYIHRIGRTGRAGCMGKSLLFVEHKEYRLLRHI 361

Query: 361 EKLIEKKVDWLN 372
           E+ I+ K+  + 
Sbjct: 362 ERKIKLKIPEVQ 373


>gi|217974178|ref|YP_002358929.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217499313|gb|ACK47506.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 472

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 152/474 (32%), Positives = 233/474 (49%), Gaps = 17/474 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           M F  LGLS  ++ A+ + GY + T +Q K IPL  +  D+   AQTGTGKTASF LP  
Sbjct: 1   MKFETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTASFALPVL 60

Query: 59  ---MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  L        + R L++ PTRELA QV +N +KY +   L    + GG     Q
Sbjct: 61  EKLAAESLTSDSNDKPILRALVMTPTRELAIQVCENIQKYSQFLPLKTLAVYGGANMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K +E+G D+L+ TPGR+ D   + +L ++++  LVIDEADRMLDMGF+  I+ +  L+ 
Sbjct: 121 RKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKRLIA 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              QT+LFSAT +D +++      +           +   T        Y    ++ A L
Sbjct: 181 PQHQTMLFSATYSDAVKQ----LAEKMLNEPQWVNVADTTTASTVVQEVYRVDKRRKAEL 236

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L  ++  +  ++F + K++  +L   L+  G +    HG+  Q +R ++L  FK   
Sbjct: 237 LSELVGRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEEFKASK 296

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGLDI  +  V N ++P  AE+YIHRIGRTGRAG  G+A + V+  D +
Sbjct: 297 LRVLVATDVAARGLDIHALPMVINLELPFLAEDYIHRIGRTGRAGLTGRAISFVSPSDDE 356

Query: 356 HIDAIEKLIEKKVDWL--NGDLSSLNPPLEKIDIAQ---HNHARKNNPIPQKSTGFDRRK 410
            +  IE LIE+K+      G       P    D          + ++  PQ  T    R+
Sbjct: 357 MLAEIEALIEQKLPVSVQPGYEEGTPLPARYRDAPAAPIKPIGKWSHKAPQDRTIGQSRQ 416

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
             Y+  K+       EK S   +    +      F    P   L  N+     +
Sbjct: 417 GKYAKGKAQDSKAGGEKSSSRAKPASGSGKP---FNATKPKSNLVSNKSGFGSR 467


>gi|160874482|ref|YP_001553798.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|304409447|ref|ZP_07391067.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307303805|ref|ZP_07583558.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|160860004|gb|ABX48538.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|304351965|gb|EFM16363.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306912703|gb|EFN43126.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|315266720|gb|ADT93573.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 472

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 152/474 (32%), Positives = 233/474 (49%), Gaps = 17/474 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           M F  LGLS  ++ A+ + GY + T +Q K IPL  +  D+   AQTGTGKTASF LP  
Sbjct: 1   MKFETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTASFALPVL 60

Query: 59  ---MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  L        + R L++ PTRELA QV +N +KY +   L    + GG     Q
Sbjct: 61  EKLAAESLTSDSNDKPILRALVMTPTRELAIQVCENIQKYSQFLPLKTLAVYGGANMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K +E+G D+L+ TPGR+ D   + +L ++++  LVIDEADRMLDMGF+  I+ +  L+ 
Sbjct: 121 RKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKRLIA 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              QT+LFSAT +D +++      +           +   T        Y    ++ A L
Sbjct: 181 PQHQTMLFSATYSDAVKQ----LAEKMLNEPQWVNVADTTTASTVVQEVYRVDKRRKAEL 236

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L  ++  +  ++F + K++  +L   L+  G +    HG+  Q +R ++L  FK   
Sbjct: 237 LSELVGRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEEFKASK 296

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGLDI  +  V N ++P  AE+YIHRIGRTGRAG  G+A + V+  D +
Sbjct: 297 LRVLVATDVAARGLDIHALPMVINLELPFLAEDYIHRIGRTGRAGLTGRAISFVSPSDDE 356

Query: 356 HIDAIEKLIEKKVDWL--NGDLSSLNPPLEKIDIAQ---HNHARKNNPIPQKSTGFDRRK 410
            +  IE LIE+K+      G       P    D          + ++  PQ  T    R+
Sbjct: 357 MLAEIEALIEQKLPVSVQPGYEEGTPLPARYRDAPAAPIKPIGKWSHKAPQDRTIGQSRQ 416

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
             Y+  K+       EK S   +    +      F    P   L  N+     +
Sbjct: 417 GKYAKGKAQDSKAGGEKSSSRAKPASGSGKP---FNATKPKSNLVSNKSGFGSR 467


>gi|255561546|ref|XP_002521783.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223538996|gb|EEF40593.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 714

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 139/424 (32%), Positives = 214/424 (50%), Gaps = 32/424 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  L+P+++ AV  AGY KP+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPMLT
Sbjct: 295 SWPESKLTPELLKAVERAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLT 354

Query: 62  I-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                           P  +++ PTRELA Q+ D   K+     + V  ++GG   E Q 
Sbjct: 355 YISRLPPMSEDNEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQG 414

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY---------- 166
            ++ +G +V+I TPGR+LD   R   ++N    +V+DEADRM+DMGF P           
Sbjct: 415 FRIRQGCEVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 474

Query: 167 -------IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
                             R T +FSATM   +++++  +L+NP  + + T     +  + 
Sbjct: 475 SNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVNIGT---AGKATDL 531

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                      +     Q L  +   K  I+F N KKN   +  +L+K  + V  +HG  
Sbjct: 532 ISQHVIMVKESEKFFKLQRLLDEAGDKTAIVFVNTKKNADTVAKNLDKAKYRVTTLHGGK 591

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q  R   L  F+     ++VA+D+A RG+DIPDV HV N+D+P   E Y HRIGRTGRA
Sbjct: 592 SQEQREISLEGFRTKKYTVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRA 651

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           G+ G A T +   D      +++++ +         S + P L K + ++       +  
Sbjct: 652 GKSGVATTFLTLHDTDVFYDLKQMLVQS-------NSHVPPELAKHEASKFKPGTIPDRP 704

Query: 400 PQKS 403
           P+++
Sbjct: 705 PRRN 708


>gi|290968690|ref|ZP_06560228.1| DEAD/DEAH box helicase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781343|gb|EFD93933.1| DEAD/DEAH box helicase [Megasphaera genomosp. type_1 str. 28L]
          Length = 420

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 140/422 (33%), Positives = 219/422 (51%), Gaps = 16/422 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+SP +   +   G   PT +Q K +P + Q  D+ G AQTGTGKT +F+LP L 
Sbjct: 4   TFQTLGVSPILCELLKKQGIAVPTQVQEKALPALFQGRDILGQAQTGTGKTLAFLLPALQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +   + + ++   LIL PTRELA Q+           ++ +  +IGG   E Q +KL+R
Sbjct: 64  QIHPDQHQEQV---LILAPTRELAKQITAVATDLAAALHIDILNIIGGQTIENQLQKLQR 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH  R  L +  +  +++DEAD++L  GF+  +  +  + P  RQ L
Sbjct: 121 HPQMIIGTPGRLLDHCRRHSLNLTGVGRIIVDEADQLLQTGFLEDVDTLLGMTPKRRQLL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT+ D+++ +++  + NP    V   SS A       +    +  K   L +     
Sbjct: 181 FFSATVPDKIKSLAKKHMHNPFVFHVLEGSSIALETIEQRIYMIKEEQKFSFLCKL--LH 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      +IFCN K+    L   L + GF+V  +HG++ Q  R ++L +F +   QL+VA
Sbjct: 239 EMNPYLSVIFCNTKERTSILAGQLIRAGFAVSELHGDLSQGRRTQVLRDFSKAKTQLLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  + HVFN+DVP+  + YIHRIGRTGRAG  G A TL    D   +  IE
Sbjct: 299 TDIAARGLDIAGITHVFNYDVPHDIDYYIHRIGRTGRAGNEGLAVTLATAADEDWVRRIE 358

Query: 362 KLIEKKVDWL--NGDLSSLNPP---------LEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
             I   +     +G +     P          +K+ +A +   ++         G +RR+
Sbjct: 359 HAIRATITKYTASGKIQVKQAPTAPKKKRIYKDKLPVATYQATKEKRHKTLHKGGNNRRR 418

Query: 411 KN 412
           ++
Sbjct: 419 RS 420


>gi|73667695|ref|YP_303710.1| ATP-dependent RNA helicase [Methanosarcina barkeri str. Fusaro]
 gi|72394857|gb|AAZ69130.1| ATP-dependent RNA helicase [Methanosarcina barkeri str. Fusaro]
          Length = 579

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 127/362 (35%), Positives = 195/362 (53%), Gaps = 7/362 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F  LGLS  ++ A+   G+ +PTPIQ K IPL L+   D+ G AQTGTGKT +F  P++
Sbjct: 6   KFKALGLSDSMLKALKKKGFEEPTPIQEKVIPLFLKGECDIIGQAQTGTGKTTAFGAPII 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + +   +V+     +L PTRELA QV++       +  L +  + GG     Q + L+
Sbjct: 66  EKIPEKSGKVQAI---VLTPTRELAIQVSEELNSLKGDKKLHIVPIYGGQSMTQQFRMLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+++ TPGR++DH  R  L + NI   V+DEAD ML+MGFI  I+ I       ++ 
Sbjct: 123 SGVDIVVGTPGRVIDHLERKSLNLENIAYFVLDEADEMLNMGFIDDIKEILKATGPDKRM 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   +  +     ++ K  E          +       +             + 
Sbjct: 183 LFFSATMPKPILGI---IKKHMKNYEYVAIKKEDLDVNLTEQIYFEVKESDKFEALCRII 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +    G++FC  K +   L   L  +G++  A+HG++ QR R KIL+ F++  I ++V
Sbjct: 240 DIEDEFYGLVFCRTKTDTSQLAQKLGDRGYAADALHGDLSQREREKILNRFRKQKINILV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T V   + + +  I
Sbjct: 300 ATDVAARGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEYRRLTYI 359

Query: 361 EK 362
           +K
Sbjct: 360 KK 361


>gi|293391078|ref|ZP_06635412.1| ATP-dependent RNA helicase RhlB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951612|gb|EFE01731.1| ATP-dependent RNA helicase RhlB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 418

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 133/403 (33%), Positives = 208/403 (51%), Gaps = 10/403 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P V+ A+ D G+   TPIQ  ++P+ L+  DV G AQTGTGKT +F+  +   
Sbjct: 11  FADLALHPLVLQALNDKGFDFCTPIQALSLPITLRDKDVAGQAQTGTGKTIAFLTALFHH 70

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                 +  V  PR LIL PTRELA Q+  + + + K      AL  GG  ++ Q K +E
Sbjct: 71  LLTYPKQTEVNQPRALILAPTRELAVQIEHDAQIFLKTTKFKTALAYGGDGYDKQLKAIE 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI T GR++D+  +G + ++ I+ +V+DEADRM D+GFI  I+ +    P  +Q 
Sbjct: 131 NGVDVLIGTTGRVIDYVRQGVIRLDQIQTVVLDEADRMFDLGFIRDIRYLLRKCPPPQQR 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L    + T   +     F       E        +T +      +   ++    L   L 
Sbjct: 191 LTMLFSATLSYKVRELAFEDMNS-PEYVEIEPEQKTGQQIKEELFYPSNRDKIPLLLTLL 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G + ++V
Sbjct: 250 EEEWPERCIVFANTKHKCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 309

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL I +V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   ++   ++ AI
Sbjct: 310 ATDVAARGLHIAEVTHVFNYDLPDDREDYVHRIGRTGRAGESGISISFACEQYAMNLPAI 369

Query: 361 EKLIEKKVDWLNGD----LSSLNPP---LEKIDIAQHNHARKN 396
           E+ I   +     D    L  L  P     + + +  N+ R+ 
Sbjct: 370 EEYIGHSITVSQYDPNALLQDLPKPYRLKRQTNFSAQNNNRRK 412


>gi|325970668|ref|YP_004246859.1| DEAD/DEAH box helicase [Spirochaeta sp. Buddy]
 gi|324025906|gb|ADY12665.1| DEAD/DEAH box helicase domain protein [Spirochaeta sp. Buddy]
          Length = 546

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 129/431 (29%), Positives = 220/431 (51%), Gaps = 8/431 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS +V+  +  AG+   T +Q K +P+ L   DV   ++TG+GKTA +VL +L
Sbjct: 1   MKFIELPLSEQVLKGIEAAGFTDCTEVQEKVLPISLSHRDVMAQSKTGSGKTAVYVLTIL 60

Query: 61  TILEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
               + + +    P+ LI+ PTRELA Q+ ++  K     +  +V    GG+ +  Q++ 
Sbjct: 61  QSFVEAQNQGKSKPKALIVAPTRELAVQIEEDTLKLASGMDDVSVGCFFGGVGYGKQDEI 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE+G D+ +CTPGRILD+    K+     +I ++DEADR+ DMGF P IQ + SL+    
Sbjct: 121 LEKGCDIFVCTPGRILDYQKMHKIDFRQFDIFIVDEADRLFDMGFYPDIQKMFSLLRACT 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
                  + T   +  +  +    + +E+                 +    +K  L  + 
Sbjct: 181 DRQTMLFSATLGTKVRNLAWSFMNEPVELEVQPEEITVKAITQELFHISKDQKFGLFLK- 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  ++  +N +IF N K   + +   L   G+    + G++ Q  R++ +   K+G I+ 
Sbjct: 240 LMKKENPENCLIFTNTKARCIEVAKRLSLNGYPTKYLMGDLPQTKRLQTIERMKDGKIKF 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGL I D+  V N+D+P+  E+Y+HRIGRT RAG+ GK+ TL  +E + +++
Sbjct: 300 LVATDVAARGLQIDDLQLVVNYDIPDDFESYVHRIGRTARAGKSGKSITLADEEYVFNLE 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK--NNPIPQKSTGFDRRKKNYSSQ 416
            IE  I+ K+  +  +   L    E +D +     R   +N     S+   R       +
Sbjct: 360 PIENYIQMKIPVIWPEEGELP---EVVDASASYSFRDLVSNDEYAPSSARPRNGAAPRGR 416

Query: 417 KSHIPLKESEK 427
           K  +PL+   +
Sbjct: 417 KGPLPLRRGSE 427


>gi|15150336|gb|AAK85400.1|AF399934_1 RNA helicase p47 [Spisula solidissima]
          Length = 449

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 110/376 (29%), Positives = 186/376 (49%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L   ++  + + G+  P+PIQ  +IP+ L   D+   A+ GTGKT ++ +P+L 
Sbjct: 54  EFEDFCLKRDLLMGIFEKGWESPSPIQEASIPIALTGRDILARAKNGTGKTGAYAIPILE 113

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+      + PTRELA Q +    +  K+    + +  GG   +    +L  
Sbjct: 114 RIDNTKDEVQAMC---IVPTRELALQTSQILIELSKHIGAKIMVTTGGTNLKDDIMRLYE 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
               ++ TPGRILD  N+  + +    ILV+DEAD++L   F   + +I S +P  RQ L
Sbjct: 171 PVHAIVATPGRILDLMNKNLVKIGKCGILVLDEADKLLSQDFKGMLDSIISHLPNDRQIL 230

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    +++    F++   +           T++           K+       L S
Sbjct: 231 LYSATFPLSVEQ----FMRKYLQSPYEINLMDELTLKGVTQYYAFVQEKQKVHCLNTLFS 286

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+S   IH  ++Q+ R ++  +F++G  + +V 
Sbjct: 287 KLQINQSIIFCNSTQRVELLAKKITELGYSCFYIHARMNQQHRNRVFHDFRQGLCRNLVC 346

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D   +  IE
Sbjct: 347 SDLFTRGIDIQAVNVVINFDFPKHAETYLHRIGRSGRYGHLGIAINLITYDDRFSLHKIE 406

Query: 362 KLIEKKVDWLNGDLSS 377
             +  ++  +  ++  
Sbjct: 407 SELGTEIKPIPKNIDK 422


>gi|167041390|gb|ABZ06143.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
           HF4000_005K23]
          Length = 427

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 126/416 (30%), Positives = 206/416 (49%), Gaps = 18/416 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L L+  +  ++    +  PTPIQ + IP  L   D+ G AQTGTGKT  + +  + 
Sbjct: 3   NFSELNLNESLKHSIARMYFKIPTPIQAQAIPPALLGKDILGTAQTGTGKTLCYGIACIN 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   R    +      E   ++   +    E      N+  A+LIGG   + Q ++L++
Sbjct: 63  KLLNDRGSNALIICPTRELAVQVGDVLNGLIENT---MNIKSAVLIGGESMQKQLRQLQK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+ DH  R  L ++    LV+DE DRMLDMGFIP ++ I   VP   QTL
Sbjct: 120 RPRLIIGTPGRLNDHLKRKSLKLHQSYFLVLDETDRMLDMGFIPQVEQILKFVPKKHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   + K++E +L +P RI V + ++              Q S+     +   + 
Sbjct: 180 LFSATLPQNILKITERYLNDPIRIRVGSTTTPISK----IKQEVIQVSEGDKYNKLQEEL 235

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + ++F   K+N   +   L   G     +HGN+ Q  R + L  F+ G I+++++
Sbjct: 236 YKRKGSILLFVKTKRNADKMADRLHDDGHRCDCMHGNLRQSKRQRTLIAFRSGKIRILIS 295

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           ++LA+RGLD+P + HV N+ +P   E++IHRIGRT RAG  G A T +   D +  + I+
Sbjct: 296 TELASRGLDVPSIQHVINYHLPQVPEDFIHRIGRTARAGAEGCALTFITPNDRQMWNGIQ 355

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-KKNYSSQ 416
           +LI            ++         + H   +K +   Q+     +  KKNY  +
Sbjct: 356 RLIN----------PNVKQEFNTFKKSSHGRKKKFSRFKQRGNNESKPFKKNYFER 401


>gi|170091070|ref|XP_001876757.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648250|gb|EDR12493.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 661

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 124/449 (27%), Positives = 223/449 (49%), Gaps = 8/449 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL    +  +    Y  PT IQ + IP ++   DV G+A+TG+GKT +F+LP+  
Sbjct: 81  KWSHFGLPANCLDVIKRLNYTAPTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLLPLFR 140

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++  R   ++  P  +++ PTRELA Q+    + + K  NL      GG P + Q  +L
Sbjct: 141 HIKDQRSLEQMEGPIAVVMTPTRELAVQIHKECKAFLKVLNLRAVCAYGGSPIKDQIAEL 200

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++GA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I + +  
Sbjct: 201 KKGAEIIVCTPGRMIDLLTANSGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIINNIRP 260

Query: 177 TRQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            RQT+LFSAT   ++     +   +  +          AE  +   V        +   +
Sbjct: 261 DRQTVLFSATFPKQMDSLARKILHKPLEITVGGRSVVAAEIEQIVEVRPEDTKFNRLLEI 320

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              + ++D     ++F ++++   NL   L ++G+   ++HG  DQ  R   +++FK G 
Sbjct: 321 LGQMYNEDPECRTLVFVDRQEAADNLLRELMRKGYLCMSLHGGKDQVDRDSTIADFKSGV 380

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G   T +  E  +
Sbjct: 381 VPIVIATSVAARGLDVKQLKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCVTFITPEQER 440

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKN-NPIPQKSTGFDRRKKNY 413
           +   I + ++     +  DL  L N  L+K+   +   A              +R  +  
Sbjct: 441 YSVDIYRAVKASNATIPKDLEELANGFLDKLKTGKAQAAGSGFGGKGLDRLDKERDAREK 500

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADS 442
           + +K++    E +K +  ++   +  A S
Sbjct: 501 AERKAYGEPGEEDKPTPAEEMAAKATASS 529


>gi|26991447|ref|NP_746872.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440]
 gi|24986522|gb|AAN70336.1|AE016675_6 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
           KT2440]
          Length = 443

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 148/374 (39%), Positives = 218/374 (58%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+FA LGL   ++  +    Y  PTP+Q K IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV +N  +Y +N  LT   + GG+    Q  +
Sbjct: 61  QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLTTYAVYGGVSINPQMMR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+LD F +  +  N ++ LV+DEADRMLD+GF   +Q++ + +P  R
Sbjct: 121 LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D+++ ++   L +P  IEV+  ++TA +++   V    +           
Sbjct: 181 QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRKADLFCHLLR 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            Q     K  ++F   +  V  L   L  +G +   IHG+  Q +R + L +FK   +Q+
Sbjct: 241 KQRW---KQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLA 357

Query: 359 AIEKLIEKKVDWLN 372
           AIE L  + +    
Sbjct: 358 AIEVLTRQTLPRHE 371


>gi|301165769|emb|CBW25341.1| putative RNA helicase dead-box protein [Bacteriovorax marinus SJ]
          Length = 591

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 140/433 (32%), Positives = 232/433 (53%), Gaps = 13/433 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           M+F+DL L   ++ A+ D GY  PT IQ K IPL+L++  D  G AQTGTGKTA+F LP+
Sbjct: 1   MNFSDLTLPESLLRALEDKGYKSPTDIQEKAIPLLLEKDTDFVGQAQTGTGKTAAFSLPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK- 118
           L  ++     V+     +L PTRELA Q+ +  + + K   + +  + GG+P + Q +  
Sbjct: 61  LAKIDSKSGDVQAI---VLSPTRELANQITEEMKSFCKYEKIKILSVYGGVPLDGQIRTL 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +    V++ TPGR+LD   RG L + N ++ V+DEAD MLDMGFI  ++ I S +   +
Sbjct: 118 KKGRPQVVVGTPGRVLDLIKRGVLKLENAKLAVLDEADEMLDMGFIDDVKTILSELGDKK 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +T ++SATM   +  + +++L  P+ I++   + + E IE  +         +       
Sbjct: 178 KTWMYSATMPKAILSLIKSYLNEPEVIKIEKKTLSNEDIEQKYFLIKRGNLGEAVCRILD 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +      GI+FC  K +   L      +GF   A+HG++ Q  R   +  FK+  ++L
Sbjct: 238 SLTDYY---GIVFCRTKIDAKKLSDEFNYRGFPSDALHGDMSQTQRDLTMRAFKKKKVKL 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V +D+AARG+D+ ++ HV N+ +P   E+Y+HRIGRTGRAG+ G A+T++   +   I 
Sbjct: 295 LVCTDVAARGIDVDNLTHVINYGLPQDLESYVHRIGRTGRAGQKGCAYTVIDSSEKFRIR 354

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +E+L+  K++     L +L    E       N   K   + +K    +    ++S  K 
Sbjct: 355 MLERLMNTKIE-----LGTLPSIDEIKKALVKNEVSKLEFVAEKLESSENLDSSFSIFKE 409

Query: 419 HIPLKESEKISKL 431
            +   E E + K+
Sbjct: 410 SLEEMEKEALLKV 422


>gi|326673881|ref|XP_003200020.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like, partial
           [Danio rerio]
          Length = 477

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 130/389 (33%), Positives = 197/389 (50%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G V PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 37  SFREMKFPQAILKGLKKKGIVHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPIIM 96

Query: 62  IL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGK------NYNLTVALLIGGI 110
                       +   P  LI+ P+RELA Q     E Y K         +  AL IGG+
Sbjct: 97  FCLEQEKRLPFCKREGPYGLIICPSRELARQTHGIIEYYCKLLEDEGAPQMRCALCIGGM 156

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + ++ G  +++ TPGR++D  N+  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 157 SVKEQMEVVKHGVHMMVATPGRLMDLLNKKMVSLDICRYLALDEADRMIDMGFEEDIRTI 216

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     +      A       +       +
Sbjct: 217 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPITINVGRAGAASLDVIQEVEYVKE 272

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 273 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 332

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FKEG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G+ G A T + 
Sbjct: 333 FKEGKKDVLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATTFIN 392

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 393 KGCDESVLMDLKALLVEAKQKVPPVLQVL 421


>gi|256860908|gb|ACV32356.1| vasa [Scomber japonicus]
          Length = 643

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 130/388 (33%), Positives = 206/388 (53%), Gaps = 13/388 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 208 MTFDEAELCESLRKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 267

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + ++ P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 268 QQLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGH 327

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
           Q + +ERG +V+  TPGR+LD   RGK+ ++ +  LV+DEADRMLDMGF P ++      
Sbjct: 328 QIRDIERGCNVVCGTPGRLLDMIGRGKVGVSKLRYLVLDEADRMLDMGFEPDMRRLVGSP 387

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++Q+++ +FL+             A +          ++SK
Sbjct: 388 GMPSKEDRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSK 447

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +       L     M+  ++F   K+    +   L ++     +IHG+ +QR R + L++
Sbjct: 448 RE--QLLDLLKTTGMERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALAD 505

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   +MVA+ +AARGLDIPDV HV NFD+PN  + Y+HRIGRTGR G  G+A +   
Sbjct: 506 FRSGKCPVMVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYD 565

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSS 377
            + D +   ++  ++ K    +   L  
Sbjct: 566 PDGDSQLACSLVTVLSKAQQEVPSWLEE 593


>gi|170718552|ref|YP_001783396.1| ATP-dependent RNA helicase RhlB [Haemophilus somnus 2336]
 gi|189040032|sp|B0UUZ9|RHLB_HAES2 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|168826681|gb|ACA32052.1| DEAD/DEAH box helicase domain protein [Haemophilus somnus 2336]
          Length = 419

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 127/382 (33%), Positives = 199/382 (52%), Gaps = 3/382 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L   V  A+ + G+   TPIQ  ++P+ L+  D+ G AQTGTGKT +F+      
Sbjct: 11  FSDLALHRIVQQAIKEKGFEFCTPIQALSLPITLKGQDIAGQAQTGTGKTIAFLTATFHH 70

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +        PR LIL PTREL  Q+A++     +   L   L  GG  ++ Q K ++
Sbjct: 71  LLQKNNINSSEQPRALILAPTRELVVQIANDANFLVQATGLKTGLAYGGEGYDKQLKVID 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P  +Q 
Sbjct: 131 RGIDILIGTTGRVIDYVKQGIIRLDYIQVVVLDEADRMFDLGFIRDIRYLLRKCPVPQQR 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L    + T   +     F       +        +T        +   ++    L   L 
Sbjct: 191 LTMLFSATLSYKVRELAFEHMND-PQYVEIEPLQKTGHRIREELFYPSNQDKMALLMTLL 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  IIF N K     +   L   G  V  + G++ Q+ R+ +L  F +GT+ ++V
Sbjct: 250 EEEWPERCIIFSNTKHRCEEIWGYLSADGHRVGLLTGDVMQKKRLSLLKQFTDGTLDVLV 309

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL IPDV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ AI
Sbjct: 310 ATDVAARGLHIPDVTHVFNYDLPDDCEDYVHRIGRTGRAGESGISISFACEEYAINLPAI 369

Query: 361 EKLIEKKVDWLNGDLSSLNPPL 382
           E+ I   +     D  +L   L
Sbjct: 370 EEYIGHSIPVSQYDAKALIEDL 391


>gi|296425145|ref|XP_002842103.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638362|emb|CAZ86294.1| unnamed protein product [Tuber melanosporum]
          Length = 513

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 131/415 (31%), Positives = 216/415 (52%), Gaps = 12/415 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+   +  A  + GY  PT IQ+++IP+ L+  D+ G+A+TG+GKTA+F +P+L 
Sbjct: 83  SFKELGVMDSLCEACENLGYKNPTSIQVESIPVALEGKDLIGLAETGSGKTAAFAIPILQ 142

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L      +      IL PTRELA Q+++ FE  G    +  A+++GG+    Q+  L +
Sbjct: 143 ALWDNPTGLFA---CILAPTRELAFQISEQFEALGGGIGVRSAVIVGGMDMMTQSVALGK 199

Query: 122 GADVLICTPGRI-LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +L+ TPGR+     N     + N++ LV+DEADR+LDM F P +  I  ++P TR+T
Sbjct: 200 KPHILVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKVIPQTRRT 259

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT +++K+    L +P RI V +  ST  T+   F+       K        L 
Sbjct: 260 YLFSATMTSKVEKLQRASLSSPVRISVGSKYSTVSTLIQKFLFIPF---KHKDTYLVYLM 316

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   +  IIFC   +    L   L   GF+   ++G + Q +R+  L+ FK G+  ++V
Sbjct: 317 NEFAGQTTIIFCRTVQETSRLAILLRHLGFNAVPLNGQMSQSARLGALNKFKSGSRNILV 376

Query: 301 ASDL-----AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           A+D+              +  V N D+   ++ YIHR+GRT RAGR G++ +LV + +++
Sbjct: 377 ATDVAARGLDMHVSPDALLYCVLNHDLAQDSKTYIHRVGRTARAGRSGRSISLVTQYEVE 436

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
               IE  + KK+   +     +    E++  AQ   A++     +K  G    +
Sbjct: 437 LFLRIEAALGKKIPEFDVQEEDVLIFSERVGEAQREAAKQLREEREKKGGRREAR 491


>gi|183984161|ref|YP_001852452.1| cold-shock DEAD-box protein, DeaD [Mycobacterium marinum M]
 gi|183177487|gb|ACC42597.1| cold-shock DEAD-Box protein, DeaD [Mycobacterium marinum M]
          Length = 571

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 135/370 (36%), Positives = 208/370 (56%), Gaps = 7/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL + P V+ A+ D GY  PT IQ  TIP ++   DV G+AQTGTGKTA+F +P+L+
Sbjct: 14  TFADLQIHPSVMRAIADVGYESPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILS 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-E 120
            ++      +    L+L PTRELA QVA+ F +YG + +    L + G    A       
Sbjct: 74  KIDTTSTATQ---ALVLAPTRELALQVAEAFSRYGAHLSRLNVLPVYGGSSYAIQLAGLR 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  R  L ++ ++ LV+DEAD ML MGF   ++ I S  P  +Q 
Sbjct: 131 RGAQVVVGTPGRVIDHLERRTLDLSRVDYLVLDEADEMLTMGFAEDVERILSETPEYKQV 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++K++  +L +P  ++    ++TAE I   ++                ++
Sbjct: 191 ALFSATMPPAIRKITTRYLHDPLEVKSEAKTATAENISQRYIQVAGPRKMDALTRVLEVE 250

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + M   +      + V     +   +GFS  AI+G+I Q  R + ++  ++G I ++V
Sbjct: 251 PFEAMIVFVRTKQATEEVAEKLRA---RGFSAAAINGDIPQGQRERTITALRDGGIDILV 307

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  +   +  I
Sbjct: 308 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALLFVSPRERHLLKLI 367

Query: 361 EKLIEKKVDW 370
           EK   + +  
Sbjct: 368 EKATRQTLTE 377


>gi|87302363|ref|ZP_01085188.1| Superfamily II DNA and RNA helicase [Synechococcus sp. WH 5701]
 gi|87283288|gb|EAQ75244.1| Superfamily II DNA and RNA helicase [Synechococcus sp. WH 5701]
          Length = 427

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 162/428 (37%), Positives = 234/428 (54%), Gaps = 8/428 (1%)

Query: 9   SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
           S  ++ A+   GY  P+PIQ++ IP VL   DV   AQTGTGKTA F LPML  L  G  
Sbjct: 2   SEPLLKAIALKGYTCPSPIQVQAIPAVLSGRDVMAAAQTGTGKTAGFTLPMLERLRHGPH 61

Query: 69  -RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
            R    R+L+L PTRELAAQVA++ + YG+  +L   ++ GG+    Q ++L RGADVL+
Sbjct: 62  ARNNQVRSLVLTPTRELAAQVAESVQAYGRFLDLRGDVVFGGVKVNPQMQRLRRGADVLV 121

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR++D + +  +  + +EILV+DEADRMLDMGFI  IQ I +L+P  RQ LLFSAT 
Sbjct: 122 ATPGRLMDLYQQNAIRFDRLEILVLDEADRMLDMGFIRDIQKILALLPPKRQNLLFSATF 181

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
              ++K++   L  P +++    +  A  +E                        +  + 
Sbjct: 182 NPSIRKLAHGLLHQPLQLQATPENRAAPLVEQVMHPCDMARKGDLLSHL---IRSNDWQQ 238

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            ++F   K     L   L ++G +  AIHGN  Q +R + L++FK G ++++VA+DLAAR
Sbjct: 239 VLVFSRTKHGANRLAERLSQEGVAAMAIHGNKSQGARTRALASFKSGELRVLVATDLAAR 298

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           GLDI  + HV N D+PN AE+Y+HRIGRTGRAG+ G A +LVA E+ + + AIEK+I   
Sbjct: 299 GLDIEQLPHVVNLDLPNVAEDYVHRIGRTGRAGQSGHALSLVAAEEHELLRAIEKVIGNP 358

Query: 368 VD--WLNGDLSSLN--PPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLK 423
           +    + G   +++  PPL+          R             RR    S      P+ 
Sbjct: 359 LPRSEIPGFEPTIHSAPPLDLSGGRGKGGRRGGGQRSGPGASAPRRNGPRSGSPRSQPIS 418

Query: 424 ESEKISKL 431
              +    
Sbjct: 419 RESRPRGR 426


>gi|293334655|ref|NP_001168054.1| hypothetical protein LOC100381784 [Zea mays]
 gi|223945725|gb|ACN26946.1| unknown [Zea mays]
          Length = 672

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 135/386 (34%), Positives = 212/386 (54%), Gaps = 9/386 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        ++  VL AG+  PTPIQ ++ P+ ++  D+  +A+TG+GKT  ++LP  
Sbjct: 157 MTFQSTCFPSDILREVLQAGFSAPTPIQAQSWPIAMKGRDIVAVAKTGSGKTLGYLLPGF 216

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L++     R  P  L+L PTRELA Q+ D   K+G++  ++   L GG P   Q ++L
Sbjct: 217 ILLKRLHHNSREGPTVLVLSPTRELATQIQDEAIKFGRSSRISSTCLYGGAPKGPQLREL 276

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGADV++ TPGR+ D     K+ +  +  LV+DEADRMLDMGF P I+ I   +P  RQ
Sbjct: 277 ERGADVVVATPGRLNDILEMNKVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKQIPPRRQ 336

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+++AT   E++K++ + L NP ++ +                    + +K   L Q +
Sbjct: 337 TLMYTATWPKEVRKIASDLLNNPVQVNIGNTDQLVANKSITQHVEVIPHMEKSRRLDQ-I 395

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + II     K + +       + +   AIHG+  Q  R  +L++F+ G   ++
Sbjct: 396 LRSQDPGSKIIIFCSTKRMCDQLARNLSRQYGASAIHGDKSQAERDSVLNDFRSGRCPVL 455

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G A+T    +D K+   
Sbjct: 456 VATDVAARGLDIKDIRIVVNYDFPTGVEDYVHRIGRTGRAGATGSAYTFFGDQDSKYASE 515

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKI 385
           + K++E       G   S+ P L+++
Sbjct: 516 LVKILE-------GANQSVPPQLKEM 534


>gi|21226849|ref|NP_632771.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
 gi|20905151|gb|AAM30443.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
          Length = 587

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 127/362 (35%), Positives = 195/362 (53%), Gaps = 7/362 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F  LGLS   + A+   G+ +PTPIQ K IPL L+   D+ G AQTGTGKT +F  P++
Sbjct: 6   KFKALGLSDSTLKALKKKGFEEPTPIQEKVIPLFLKGEADIIGQAQTGTGKTTAFGAPII 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + +   +    + +IL PTRELA QV++       +  L +  + GG     Q + L+
Sbjct: 66  EKIPE---KSGHVQAIILTPTRELAIQVSEELNSIKGDKKLYIVPIYGGQSMTQQLRVLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+++ TPGR++DH  R  L + +I   V+DEAD ML+MGFI  I+ I       ++ 
Sbjct: 123 SGVDIVVGTPGRVIDHLERKSLNLEHIAYFVLDEADEMLNMGFIDDIKEILKSTGPNKRM 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM   +  + +  +QN + I   T      T        +             + 
Sbjct: 183 LFFSATMPKAILGIVKKHMQNYEHI---TIEKEELTETLTEQIYFEVKESDKFEALCRII 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +    G++FC  K +   L   L  +G+   A+HG++ Q+ R KIL+ F++  I ++ 
Sbjct: 240 DIEDEFYGLVFCRTKTDTSQLAQKLSDRGYLADALHGDLSQQEREKILNKFRKQKINILA 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+ HV N+ +P   E+Y+HRIGRTGRAG+ G A T V   + + +  I
Sbjct: 300 ATDVAARGIDIMDLTHVINYALPQDPESYVHRIGRTGRAGKQGTAITFVTSTEFRRLTYI 359

Query: 361 EK 362
           +K
Sbjct: 360 KK 361


>gi|88811449|ref|ZP_01126704.1| ATP-dependent RNA helicase [Nitrococcus mobilis Nb-231]
 gi|88791338|gb|EAR22450.1| ATP-dependent RNA helicase [Nitrococcus mobilis Nb-231]
          Length = 437

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 138/396 (34%), Positives = 218/396 (55%), Gaps = 10/396 (2%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
             LGL   ++  + +AG+   TP+Q   +P++LQ HDV   AQTGTGK+A+F+L  +  L
Sbjct: 12  DSLGLHESLLLGIKEAGFSHCTPVQAAALPVLLQHHDVAAQAQTGTGKSAAFLLATMHYL 71

Query: 64  EKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                      P  LIL PTRELA Q+  + EK G    +  A + GGI +E Q  +L +
Sbjct: 72  MTTPVAENKTGPWALILAPTRELALQIHRDAEKLGYFTGMRCAAIYGGIGYEPQRAELTQ 131

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTRQ 179
           G D++I TPGRI+D + +    ++NIE++V+DEADRM DMGFI  ++ +   +P    R 
Sbjct: 132 GVDIIIGTPGRIIDFYKQRVFSLDNIEVVVLDEADRMFDMGFITDVRYLLRRMPPAPDRI 191

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT+++ +++++   +  P+ I +     TAE +     + Y   S     L   +
Sbjct: 192 NMLFSATLSERVKELAYEHMNAPETIAIEPEQVTAEKV---RQSLYHVASADKIGLLLGV 248

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      ++F N K++   +   L   GF    I G+I Q+ R ++L  F+EG + ++
Sbjct: 249 LRQQDATRTLVFVNTKRDAERVTAYLVGNGFDAEVISGDIPQKKREQLLQRFQEGKLPML 308

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGL IPDV  + N+D+P  AE+Y+HRIGRT RAG  G A +   +  +  +  
Sbjct: 309 VATDVAARGLHIPDVSRIVNYDLPQNAEDYVHRIGRTARAGASGDAISFACEAYVYSLPE 368

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           IE  I +K+     +++S       I+  +    RK
Sbjct: 369 IEAYIHQKI---PAEMASSQLIATDINPPRRTPRRK 401


>gi|326934003|ref|XP_003213086.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Meleagris
           gallopavo]
          Length = 944

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 140/413 (33%), Positives = 229/413 (55%), Gaps = 8/413 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ +   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLI 313

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 314 HIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKAL 373

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 374 QEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 433

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +        +  SK   L ++L+
Sbjct: 434 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRRLV 493

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L ++L+++  ++  +HG++DQ  R K++S FK+  I ++
Sbjct: 494 EFTSSG-SVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPIL 552

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612

Query: 360 IEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           + + +E     ++ +L  L   NP   K    +    +K N I     G+  R
Sbjct: 613 LVRNLEGANQHVSKELLDLAMQNPWFRKSRF-KGGKGKKLN-IGGGGLGYRER 663


>gi|220904989|ref|YP_002480301.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869288|gb|ACL49623.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 595

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 140/379 (36%), Positives = 210/379 (55%), Gaps = 10/379 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS +++ AV D G+ +P+PIQ+  +P +L  +D  G AQTGTGKTA+F LP+L 
Sbjct: 4   SFEELGLSRELLKAVEDMGFEEPSPIQVLAVPCLLAGNDAFGQAQTGTGKTAAFGLPILD 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L       R  + LIL PTRELA QVA+   K   +      L I  G P E Q + L 
Sbjct: 64  KLTPE----RNTQALILCPTRELAIQVAEELNKLAAHKRGVAILPIYGGQPIERQLRALA 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR++DH  RG L ++   + V+DEAD MLDMGF   I+ I    P + Q 
Sbjct: 120 KGVQVVVGTPGRVMDHLKRGTLRLSQASMAVLDEADEMLDMGFREDIEAILEQTPASCQR 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+   ++++S+ FL+ P+ + V     T   IE  +                   
Sbjct: 180 VLFSATVPPAIRELSKRFLREPEMLTVAQKMLTVPAIEQIYYEVRPHQKMDALCRLL--- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++FC+ K+    +   L+++G+   ++HGN+ Q  R +++  F+   + ++V
Sbjct: 237 DSRAFHKALVFCSTKRGADEVTTHLQQRGYQSDSLHGNLAQSQRDRVMQRFRAEGLDVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV  V N+D+P+  E Y+HRIGRTGRAGR G AFT V   +   +  I
Sbjct: 297 ATDVAARGLDVDDVDAVINYDIPHDVEKYVHRIGRTGRAGRVGSAFTFVTMREHYKMRDI 356

Query: 361 EKLIEKKVDWLNGDLSSLN 379
            +    ++    G L SL 
Sbjct: 357 IRCTRARITE--GRLPSLR 373


>gi|14548160|gb|AAA93186.2| DEAD family RNA helicase [uncultured crenarchaeote 4B7]
          Length = 451

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 140/411 (34%), Positives = 221/411 (53%), Gaps = 16/411 (3%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F +L ++  ++ ++ + G+  P PIQ ++IP +L+ +DV G A TGTGKTA+F +PM
Sbjct: 1   MNTFDELKINEDIMRSIKELGFTTPFPIQTQSIPELLRGNDVIGQAHTGTGKTAAFGIPM 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  +  G       + L++ PTRELA Q+ +  +K GK   + V  + GG     Q   L
Sbjct: 61  LQNIIHG----GGIQGLVIAPTRELAMQITEEIKKVGKYTKIKVVTVYGGQGIGIQLDAL 116

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R  ++++ TPGR++DH + G +  +NI+ +V+DEAD MLDMGFI  I+ +   +P  R 
Sbjct: 117 RRKPEIVVATPGRLIDHLDNGSIRTDNIKHVVLDEADVMLDMGFIEDIEYVLQKIPGNRI 176

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T L+SATM  E+ ++S+ +L N K I +++   + E         +     +        
Sbjct: 177 TSLWSATMPPEILRLSDKYLNNAKNILIDSDDLSGEG----IDQAFLVIKDREKHKYLTD 232

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    I+FC+ K    N+   L K  + V  I G++ Q  R   +  F++    ++
Sbjct: 233 FINQNKGQVIVFCSTKIRTRNVARDLIKSRYKVVPIEGDMSQNKREYSMMKFRKNQADIL 292

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P VG V N+DVPN+   Y HRIGRT RAG  GKA TLV+   I     
Sbjct: 293 VATDVAARGIDVPRVGLVVNYDVPNQDMVYFHRIGRTARAGAKGKAITLVSYSSIGDWKF 352

Query: 360 IEKLIEKKVDWLNGDLS-SLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           I+K I+  +  LN  +   ++ P    D  + N  R+        +G+ RR
Sbjct: 353 IKKQIKSDLTDLNKKMGIEVHIP----DPLKRNVGRR--IAQPMRSGYGRR 397


>gi|71756053|ref|XP_828941.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70834327|gb|EAN79829.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
 gi|261334867|emb|CBH17861.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 401

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 201/374 (53%), Gaps = 6/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   GY KPT IQ + +   LQ  D+   A +G+GKT++F + +L 
Sbjct: 30  TFEAMGLKKDLLHGMYGYGYKKPTAIQKRFVAPFLQSRDLVAQASSGSGKTSAFCICLLQ 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             E      +    L+L PTRELA Q  D     G    ++    IGG   E   ++LE 
Sbjct: 90  ASEPTLRETQG---LVLSPTRELALQTQDLCNNIGHYMGISAYAAIGGKSIEDDLRRLES 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  ++  TPGR+ D   R  L +N+++ LV+DEAD ML  GF   I +    +    Q +
Sbjct: 147 GVQIVSGTPGRVFDMIKRRHLRVNHLKTLVLDEADEMLGKGFKAQI-HDIYRMIPPLQVV 205

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  ++  ++E F+  P RI V     T ++I   FV+   + +K   L       
Sbjct: 206 LVSATLPVDVLDMTEKFMTEPVRILVKRDEITVDSIMQYFVSVDEEKNKFDTLCDL--YD 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+ + +IFCN +K V  L   + K+ F+V  +HG++ Q  R +I+ NF+EG  +++++
Sbjct: 264 TLTIAHAVIFCNTRKKVEQLAKKMTKEKFTVSFMHGDMPQAERDEIMRNFREGKSRVLIS 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL +RG+D+  +  V N+D+P   E YIHRIGRTGR GR G A + V  ++++ +  IE
Sbjct: 324 TDLWSRGIDVEQISLVLNYDLPFSREQYIHRIGRTGRMGRKGLAISFVKHDELRLLRDIE 383

Query: 362 KLIEKKVDWLNGDL 375
           +    +++ L  ++
Sbjct: 384 QFYATQIEELPANV 397


>gi|307202910|gb|EFN82130.1| Probable ATP-dependent RNA helicase DDX46 [Harpegnathos saltator]
          Length = 1034

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 140/443 (31%), Positives = 226/443 (51%), Gaps = 17/443 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G++ K +  +   GY KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 373 SWAQCGVTKKELEVLKKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFR 432

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  LI+ PTREL  Q+  + +K+ K+  L+   + GG     Q  +L
Sbjct: 433 HILDQPPLADGDGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHVCVYGGTGISEQIAEL 492

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 493 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIMENVRP 552

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT   +++ ++   L  P  ++V   S   +           +  +K   L 
Sbjct: 553 DRQTVLFSATFPRQMEALARRILTRPVEVQVGGRSVVCKD--VEQHVVVLEEDQKFYKLL 610

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L       + IIF ++++N   L   L K  +S  ++HG IDQ  R   + +FK G  
Sbjct: 611 EILGHYQDKGSAIIFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTILDFKAGRT 670

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  E  ++
Sbjct: 671 KLLVATSVAARGLDVKHLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITSEQERY 730

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I +           +L+ +  P     + +   AR+     +  TG     K +   
Sbjct: 731 AGDILRA---------HELAGVLVPEPLRQLWEGYKARQAADGKKVHTGGGFSGKGFKFD 781

Query: 417 KSHIPL-KESEKISKLQQDIQEN 438
           +S   L  E +K  K    +Q++
Sbjct: 782 ESEAALANEKKKFQKAALGLQDS 804


>gi|229523508|ref|ZP_04412913.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
 gi|229337089|gb|EEO02106.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
          Length = 396

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 150/402 (37%), Positives = 228/402 (56%), Gaps = 7/402 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V  V   GY KPT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +G+ R +  R LIL PTRELA QVA+  E+YGK+  L    + GG+  +AQ ++L 
Sbjct: 61  EKLRQGQ-RKKRIRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLI 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q 
Sbjct: 120 DGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQF 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT++ +++++++  +++P  I +    ++   I    +                  
Sbjct: 180 LLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHL---I 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +V
Sbjct: 237 NEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  I
Sbjct: 297 ATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           E  +   ++     +     P + + I+  N+  K+    Q+
Sbjct: 357 ESRLGHLIER---RVVEGFEPKKPVPISILNYVPKHKRAAQE 395


>gi|27463689|gb|AAO15914.1|AF510054_1 vasa-like [Schistocerca gregaria]
          Length = 588

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 113/385 (29%), Positives = 188/385 (48%), Gaps = 8/385 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DFA  GL   V+  V   GY KPTP+Q   IP++    D+   AQTG+GKTA+F+LP++
Sbjct: 167 VDFARSGLREFVLQNVKKCGYTKPTPVQKYAIPIIAGGRDLMACAQTGSGKTAAFLLPII 226

Query: 61  TILEKGRARV------RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             +      +        P  +IL PTRELA Q+ +   K+     +   ++ GG     
Sbjct: 227 NTILNDPRELVMTGQGCEPHAVILSPTRELALQIFNEARKFALGSIVKSVVVYGGTSTMH 286

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q +++ RG  +L+ TPGR++D  NRG++   ++  +V+DEADRMLDMGF+P ++ +    
Sbjct: 287 QAQQVARGCHILVATPGRLMDFLNRGRVNFQSVRFVVLDEADRMLDMGFLPDVEKMLEHP 346

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
                    +  ++    +  +          +                 + + SK    
Sbjct: 347 TMVPTGERQTVMVSATFPEEIQRLATKFLSNYLFLAVGIVGGACSDVEQIFYKVSKFDKR 406

Query: 235 LQQLLQSQDTMKNGIIFCNQKKN-VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            +     ++     ++   + K     L   L +Q F   +IHG+  Q  R + L +FK 
Sbjct: 407 AKLTEILREEGGKKVLVFVETKRIADFLAAFLCEQKFPTTSIHGDRLQSQREEALYDFKS 466

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE- 352
           G + ++VA+ +AARGLDI +V HV N+D+P   + Y+HRIGRTGR G  G+A +    + 
Sbjct: 467 GRMGILVATAVAARGLDIKNVAHVINYDLPKSIDEYVHRIGRTGRVGNRGRATSFYDPDV 526

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSS 377
           D      + K++++    +   L S
Sbjct: 527 DAPIARDLVKILQQANQNVPSFLES 551


>gi|313202644|ref|YP_004041301.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312441960|gb|ADQ78316.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 621

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 145/464 (31%), Positives = 261/464 (56%), Gaps = 31/464 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPM 59
           M F +L L   ++ A+ + GY +P P+Q KTIP +L++  D+  +AQTGTGKTA+F LP+
Sbjct: 1   MTFRELNLKDDILSAIEELGYAQPMPVQEKTIPFMLEQTADLVALAQTGTGKTAAFGLPV 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
           L +++ GR +V+    L+L PTREL  Q+A++ + Y KN   + +  + GG     Q ++
Sbjct: 61  LNMIDAGRKQVQA---LVLAPTRELCIQIANDLKGYSKNMRGMRIVPVYGGEDIRTQLRQ 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+    +++ TPGR++D   RGK+ +  I+ LV+DEAD ML+MGF   I+ I    P TR
Sbjct: 118 LDTAPQIIVATPGRLIDLIERGKIELGAIDFLVLDEADEMLNMGFKEDIETILERTPETR 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +T+LFSATM  E+  +++ +++N + I V T ++ +E +EH     Y   +++  L+ + 
Sbjct: 178 RTMLFSATMPKEIANIAKRYMKNYEEITVGTKNAGSENVEH---IYYVSQARQRYLVLKR 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   +    GI+FC  ++    +   L   G++  A+HG++ Q  R  ++  F+   IQL
Sbjct: 235 IVDLNPDIYGIVFCRTRQETKEVADKLMHDGYNADALHGDLSQAQRDNVMQKFRIRNIQL 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ D+ HV N+++P+  E Y HR GRTGRA + G A +++  ++   I 
Sbjct: 295 LVATDVAARGLDVSDLTHVINYNLPDDVEVYTHRSGRTGRANKKGIAVSIIHSKERFKIK 354

Query: 359 AIEKLI----------------EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
            IE+++                +K++ ++   + ++    E+I+       ++   + ++
Sbjct: 355 DIERMLRKTFIQEQIPNGLEVCKKQLFYMIDRMENVEVSEEQIETYMPQIMKQLEYLSKE 414

Query: 403 -------STGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQEND 439
                  S  F+R    Y + +     + SE+  + +++   ND
Sbjct: 415 ELLKRFVSLEFNRFLSYYKNAEDLNLPERSERGERGERNGDRND 458


>gi|168026784|ref|XP_001765911.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682817|gb|EDQ69232.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 406

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 112/375 (29%), Positives = 191/375 (50%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P + 
Sbjct: 33  EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPAIE 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++ +  V+    L+L PTRELA Q +   ++  K+ N+ + +  GG        +L +
Sbjct: 93  KIDQNKNAVQ---VLLLVPTRELALQTSQVCKELAKHLNIQIMVTTGGTSLRDDIMRLYQ 149

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD  N+G   +    +LV+DEAD++L   F P ++ +   +P  RQ L
Sbjct: 150 PVHLLVGTPGRVLDLANKGVCNLKECTMLVMDEADKLLSPEFQPLVEQLIGFLPENRQIL 209

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    ++     F     R           T++           ++       L S
Sbjct: 210 LYSATFPVTVKS----FKDRFLRKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFS 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 266 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQSHRNRVFHDFRNGACRNLVS 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 326 SDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 385

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 386 QELGTEIKPIPPQID 400


>gi|168028511|ref|XP_001766771.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681980|gb|EDQ68402.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 406

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 112/375 (29%), Positives = 191/375 (50%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P + 
Sbjct: 33  EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPAIE 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++ +  V+    L+L PTRELA Q +   ++  K+ N+ + +  GG        +L +
Sbjct: 93  KIDQNKNAVQ---VLLLVPTRELALQTSQVCKELAKHLNIQIMVTTGGTSLRDDIMRLYQ 149

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD  N+G   +    +LV+DEAD++L   F P ++ +   +P  RQ L
Sbjct: 150 PVHLLVGTPGRVLDLANKGVCNLKECTMLVMDEADKLLSPEFQPLVEQLIGFLPENRQIL 209

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    ++     F     R           T++           ++       L S
Sbjct: 210 LYSATFPVTVKS----FKDRFLRKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFS 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 266 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQSHRNRVFHDFRNGACRNLVS 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 326 SDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 385

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 386 QELGTEIKPIPPQID 400


>gi|310824350|ref|YP_003956708.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|309397422|gb|ADO74881.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
          Length = 579

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 136/410 (33%), Positives = 206/410 (50%), Gaps = 10/410 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLS + + AV  A +  PTPIQ + IP  L   DV G A TGTGKTA+++LP++ 
Sbjct: 4   SFKSLGLSSESLDAVRRARFASPTPIQAQAIPPALAGRDVIGCAVTGTGKTAAYLLPLVE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L       R P  L+L PTREL  Q+A     +G+   LT A++ GG    AQ + L +
Sbjct: 64  RLAGE----RGPVGLVLAPTRELVLQIAQEAAFFGEPRGLTQAVVTGGTDMGAQVEALRQ 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+ D    G   ++ + +LV+DEADR L+MGF+P +Q I + +P  RQTL
Sbjct: 120 RPTLVLATPGRLADLLKEGVANLSAVRMLVLDEADRTLEMGFMPELQQILAALPRERQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LF    +  L      F Q   R  V    + + T     V    +          L   
Sbjct: 180 LF----SATLGHNVTRFAQEVLRKPVRVEVTPSGTPAARAVQRLYEVEASEKYPLLLSLL 235

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + ++F   ++    +   L++ G    AIH +  Q  R + L  F+ G  + +VA
Sbjct: 236 AKDQLSVLVFTRTRERAEKVQEVLKRAGHKTAAIHADRTQGQRRQALEGFRRGQYRCLVA 295

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLD+ D+GHV NFD+P+  E+Y+HRIGRT RAG  G+A T V   D + + AIE
Sbjct: 296 TDIASRGLDVEDIGHVINFDLPHAPEDYVHRIGRTARAGASGRASTFVTSRDEETVRAIE 355

Query: 362 KLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           +++   +    +  +       LE+    Q +          + TG   +
Sbjct: 356 RIVRMSLPRAEVPREDPVFVEELEEFQAGQEDAELTKPRGLPRPTGVSAK 405


>gi|301789077|ref|XP_002929955.1| PREDICTED: probable ATP-dependent RNA helicase DDX53-like
           [Ailuropoda melanoleuca]
          Length = 590

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 134/396 (33%), Positives = 220/396 (55%), Gaps = 5/396 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI---LEKG 66
           P+++ ++  AG+ KPTPIQ +  P++LQ  D+ G+AQTGTGKT S+++P           
Sbjct: 195 PELIESIKRAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHLNNQPIS 254

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R     P  L+L PTRELA QV     KY      ++ +  GG   E Q + + +G D++
Sbjct: 255 REERNGPGMLVLTPTRELALQVEAECSKYSYKGLKSICIF-GGRNREQQIRDITKGIDII 313

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+        + + +I  LV+DEAD+MLD+GF   I  I   V   RQT++ SAT
Sbjct: 314 IATPGRLNYLQMNNFVNLQSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTVMISAT 373

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
            +D + ++ +++L+ P  + V T    A       V    Q  K  +LLQ+ LQ++    
Sbjct: 374 WSDTIHQLGQSYLKEPMIVYVGTLDLVAVNTVTQNVIITTQEEK-RSLLQEFLQNRSPQD 432

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+F  ++    +L   L  QG +V ++HG+ DQ  R + L +F+ G +++++A+DLA+
Sbjct: 433 KVIVFVRRRLVADDLSSDLSIQGITVQSLHGDRDQHDRERALEDFRSGKVKVLIATDLAS 492

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLD+ D+ HV+N+D P   E Y+HR+GRTGRAG+ G + TL+ + D K    + K++++
Sbjct: 493 RGLDVNDITHVYNYDFPRNIEEYVHRVGRTGRAGKTGLSITLMTQNDWKIATELIKILKR 552

Query: 367 KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
               +  DL ++    +     +    RK+    ++
Sbjct: 553 ANQSVPEDLLTMAEQYKLHKQKKDTGKRKSQGKSRE 588


>gi|281344701|gb|EFB20285.1| hypothetical protein PANDA_020280 [Ailuropoda melanoleuca]
          Length = 645

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 134/396 (33%), Positives = 220/396 (55%), Gaps = 5/396 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI---LEKG 66
           P+++ ++  AG+ KPTPIQ +  P++LQ  D+ G+AQTGTGKT S+++P           
Sbjct: 250 PELIESIKRAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHLNNQPIS 309

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R     P  L+L PTRELA QV     KY      ++ +  GG   E Q + + +G D++
Sbjct: 310 REERNGPGMLVLTPTRELALQVEAECSKYSYKGLKSICIF-GGRNREQQIRDITKGIDII 368

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+        + + +I  LV+DEAD+MLD+GF   I  I   V   RQT++ SAT
Sbjct: 369 IATPGRLNYLQMNNFVNLQSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTVMISAT 428

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
            +D + ++ +++L+ P  + V T    A       V    Q  K  +LLQ+ LQ++    
Sbjct: 429 WSDTIHQLGQSYLKEPMIVYVGTLDLVAVNTVTQNVIITTQEEK-RSLLQEFLQNRSPQD 487

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+F  ++    +L   L  QG +V ++HG+ DQ  R + L +F+ G +++++A+DLA+
Sbjct: 488 KVIVFVRRRLVADDLSSDLSIQGITVQSLHGDRDQHDRERALEDFRSGKVKVLIATDLAS 547

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLD+ D+ HV+N+D P   E Y+HR+GRTGRAG+ G + TL+ + D K    + K++++
Sbjct: 548 RGLDVNDITHVYNYDFPRNIEEYVHRVGRTGRAGKTGLSITLMTQNDWKIATELIKILKR 607

Query: 367 KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
               +  DL ++    +     +    RK+    ++
Sbjct: 608 ANQSVPEDLLTMAEQYKLHKQKKDTGKRKSQGKSRE 643


>gi|163739630|ref|ZP_02147039.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           BS107]
 gi|161387089|gb|EDQ11449.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           BS107]
          Length = 458

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 146/381 (38%), Positives = 232/381 (60%), Gaps = 5/381 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ +GL  K++  + + GY  PTPIQ + IP  L   DV G+AQTGTGKTA+F +P++ 
Sbjct: 19  EFSTMGLPEKLLTRIAELGYTDPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLIA 78

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            + +   +   +  R L+L PTRELA Q+A N +   +   +   L++GG+    Q  +L
Sbjct: 79  QMMQYGRKPAAKTVRGLVLAPTRELANQIAANLKGLTEGTPIKTGLVVGGVSINPQISRL 138

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+LI TPGR+LD  +RG L + + + LV+DEAD+MLD+GFI  ++ I +L+P  RQ
Sbjct: 139 SRGTDILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEQRQ 198

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  ++ +++ ++LQ+P RIEVN      +  +    + +     +   L + L
Sbjct: 199 TMLFSATMPKQMNEIANSYLQSPVRIEVNP---PGKAADKITQSVHFIAKAEKLSLLKEL 255

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  ++F   K  +  L  +L   GFS  AIHGN  Q  R + L++FK G ++++
Sbjct: 256 LGAHKDERTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALASFKSGEVKIL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIPDV +V+N+++PN  + Y+HRIGRT RAG+ G+A    A +++  + A
Sbjct: 316 VATDVAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEMGELKA 375

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           I+K +   +   +G    + P
Sbjct: 376 IQKTMNLNIPVASGRPWEVLP 396


>gi|115373138|ref|ZP_01460440.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1]
 gi|115369894|gb|EAU68827.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1]
          Length = 606

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 136/410 (33%), Positives = 206/410 (50%), Gaps = 10/410 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLS + + AV  A +  PTPIQ + IP  L   DV G A TGTGKTA+++LP++ 
Sbjct: 31  SFKSLGLSSESLDAVRRARFASPTPIQAQAIPPALAGRDVIGCAVTGTGKTAAYLLPLVE 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L       R P  L+L PTREL  Q+A     +G+   LT A++ GG    AQ + L +
Sbjct: 91  RLAGE----RGPVGLVLAPTRELVLQIAQEAAFFGEPRGLTQAVVTGGTDMGAQVEALRQ 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+ D    G   ++ + +LV+DEADR L+MGF+P +Q I + +P  RQTL
Sbjct: 147 RPTLVLATPGRLADLLKEGVANLSAVRMLVLDEADRTLEMGFMPELQQILAALPRERQTL 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LF    +  L      F Q   R  V    + + T     V    +          L   
Sbjct: 207 LF----SATLGHNVTRFAQEVLRKPVRVEVTPSGTPAARAVQRLYEVEASEKYPLLLSLL 262

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + ++F   ++    +   L++ G    AIH +  Q  R + L  F+ G  + +VA
Sbjct: 263 AKDQLSVLVFTRTRERAEKVQEVLKRAGHKTAAIHADRTQGQRRQALEGFRRGQYRCLVA 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLD+ D+GHV NFD+P+  E+Y+HRIGRT RAG  G+A T V   D + + AIE
Sbjct: 323 TDIASRGLDVEDIGHVINFDLPHAPEDYVHRIGRTARAGASGRASTFVTSRDEETVRAIE 382

Query: 362 KLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           +++   +    +  +       LE+    Q +          + TG   +
Sbjct: 383 RIVRMSLPRAEVPREDPVFVEELEEFQAGQEDAELTKPRGLPRPTGVSAK 432


>gi|14594802|emb|CAC43286.1| translation initiation factor eIF-4A1 [Arabidopsis thaliana]
          Length = 369

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 195/373 (52%), Gaps = 5/373 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F      +L++
Sbjct: 1   MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC---SGVLQQ 57

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
               +   + L+L PTRELA Q+       G    + V   +GG       + L+ G  V
Sbjct: 58  LDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHV 117

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           ++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  +FSA
Sbjct: 118 VVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSA 177

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           TM  E  +++  F+  P RI V     T E I+  +V    +  K   L          +
Sbjct: 178 TMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDL--YETLAI 235

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ +DL 
Sbjct: 236 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 295

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V ++D + +  I+K   
Sbjct: 296 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 355

Query: 366 KKVDWLNGDLSSL 378
             V+ L  +++ L
Sbjct: 356 VVVEELPSNVADL 368


>gi|327264401|ref|XP_003217002.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like [Anolis
           carolinensis]
          Length = 820

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 141/434 (32%), Positives = 209/434 (48%), Gaps = 35/434 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451

Query: 62  IL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +      ++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q
Sbjct: 452 WITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 511

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 512 GFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMP 571

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            T Q          +    +    ++  R  V   ++                       
Sbjct: 572 VTNQKPDTDEAEDPDKMMANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 631

Query: 215 --ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             +  E      +     +       +  Q      IIF NQKK    L  SLEK G++ 
Sbjct: 632 AGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNA 691

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHR
Sbjct: 692 CTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHR 751

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A + V KED      +++ I      L   +SS  P L     AQH  
Sbjct: 752 IGRTGRAGKSGVAISFVTKEDSAVFYDLKQAI------LESPVSSCPPELANHPDAQHKP 805

Query: 393 ARKNNPIPQKSTGF 406
                   ++ T F
Sbjct: 806 GTILTKKRREETIF 819


>gi|121591768|ref|ZP_01678973.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           2740-80]
 gi|121546370|gb|EAX56627.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           2740-80]
          Length = 444

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 121/390 (31%), Positives = 186/390 (47%), Gaps = 6/390 (1%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL- 63
           DLGL  +++  +    + + T IQ + IPL +   D+   ++TG+GKT +FVLPML    
Sbjct: 1   DLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSL 60

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
           +      + PR LIL PTRELA QV           + T  L+ GG  F  Q K L RG 
Sbjct: 61  KTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGP 120

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
             ++ TPGR+ DH +   L +  +E LV+DEADRMLD+GF   ++ I +     R+  L 
Sbjct: 121 RFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLM 180

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
            +                 +   +     + E  +         +      L   + +  
Sbjct: 181 FSATLAHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADA 240

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +  IIF   + +   L   L +      A+ GN++Q  R  I+  F+    +++V +D
Sbjct: 241 EYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTD 300

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +A+RGLDIP V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D +    +E  
Sbjct: 301 VASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAF 360

Query: 364 IEKKVDW-----LNGDLSSLNPPLEKIDIA 388
           +++++ +     L G    L P   K   A
Sbjct: 361 LQQEIQFEVLAGLEGKFKGLKPRQVKPKAA 390


>gi|145347521|ref|XP_001418212.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578441|gb|ABO96505.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 419

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 108/375 (28%), Positives = 188/375 (50%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P+L 
Sbjct: 46  EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFTIPILE 105

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++       + + +IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 106 KVDTS---KNIIQAVILVPTRELALQTSQVAKELGKHLGVAVMVTTGGTSLKDDIMRLHQ 162

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++D  ++    +    +L +DEAD++L   F P I  + + +   RQ L
Sbjct: 163 PVHIVVATPGRLVDLASKSVAKLGQATMLAMDEADKLLSPEFQPVIAQVINFMAKNRQIL 222

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    ++     F     R           T++           K+       L S
Sbjct: 223 LYSATFPVTVKD----FKDKYLRKPYVINLMEELTLKGITQYYAFVEEKQKVHCLNTLFS 278

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 279 KLQINQSIIFCNSVTRVELLARKITELGYSCFYIHAKMIQAHRNRVFHDFRNGACRNLVS 338

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  +D  ++  IE
Sbjct: 339 SDLFTRGIDIQSVNVVINFDFPKNSETYLHRVGRSGRFGHLGIAVNLITYDDRMNLFRIE 398

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 399 QELGTEIQQIPSQID 413


>gi|313231162|emb|CBY19160.1| unnamed protein product [Oikopleura dioica]
          Length = 427

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 187/372 (50%), Gaps = 7/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   V+  + + G+  P+PIQ  +IP+ L   D+   A+ GTGK+ ++++P++
Sbjct: 39  LSFEEFCLKRNVLMGIYEKGWESPSPIQEASIPVALSGRDILARAKNGTGKSGAYLIPLI 98

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++    +V+    L+L PTRELA Q +    + GK+  + V    GG        +L+
Sbjct: 99  ERVDPNSDKVQA---LVLVPTRELALQTSQICIEMGKHCGIKVLATTGGTDLRDDILRLD 155

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V++ TPGRILD   +    +++  +LV+DEAD++L   F   + +I   +P +RQ 
Sbjct: 156 KTVHVIVATPGRILDLITKDIAKVDSCNMLVLDEADKLLSDFFKRVVDSIVRKLPVSRQV 215

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +      F++   +           T++           K+       L 
Sbjct: 216 LLYSATFPQSVMV----FMKEHMKNPHEINLMEELTLKGVTQYYAFVAEKQKVHCLNTLF 271

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   +   G+S   IH  ++Q  R ++  +F++G  + +V
Sbjct: 272 SKLQINQSIIFCNSTQRVELLAKKITDLGYSCFYIHARMNQEHRNRVFHDFRKGLCRNLV 331

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 332 CSDLFTRGIDIQAVNVVINFDFPRMAETYLHRIGRSGRYGHLGLAINLITYDDRYNLKRI 391

Query: 361 EKLIEKKVDWLN 372
           E+ +   +  + 
Sbjct: 392 EEQLTTDIKPIP 403


>gi|309266557|ref|XP_003086787.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Mus
           musculus]
 gi|309269288|ref|XP_003084847.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like isoform 2
           [Mus musculus]
 gi|148694445|gb|EDL26392.1| mCG15236 [Mus musculus]
          Length = 620

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 129/401 (32%), Positives = 214/401 (53%), Gaps = 10/401 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT S+++P    L+     
Sbjct: 225 PEVMENIKRAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLSYLMPGFIHLDSQPLE 284

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
            R    +++       A   +         +L    + GG   + Q + + +G D++I T
Sbjct: 285 QRNGPGMLVLTPTRELALQVEAECSKYSYGDLKSVCVYGGGDRDGQIQDVSKGVDIIIAT 344

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGR+ D      + + ++  LV+DEAD+MLDMGF P I  I   V   RQT++ SAT   
Sbjct: 345 PGRLNDLQMNNFVNLKSVTYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTIMTSATWPY 404

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
            ++++++++L+ P  + V T    A +     +    +  K    +Q  L++       I
Sbjct: 405 AVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIITTEEEK-RTHIQTFLENMSPKDKVI 463

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           +F ++K    +L   L  +  SV ++HGN +Q  R K L NFK G +++++A+DLA+RGL
Sbjct: 464 VFVSRKAVADHLSSDLILRHISVESLHGNREQSDREKALENFKTGKVRILIATDLASRGL 523

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           D+ D+ HV+N+D P   E Y+HR+GRTGRAGR G + TL+ + D +    +  ++E+   
Sbjct: 524 DVHDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGMSITLITRNDWRVATELINILER--- 580

Query: 370 WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
                 ++ N P E + +A+   A K     +K  G  + K
Sbjct: 581 ------ANQNIPEELVLMAERYKANKLKREMEKKMGRPQGK 615


>gi|319425941|gb|ADV54015.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 449

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 131/432 (30%), Positives = 204/432 (47%), Gaps = 8/432 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F D  L  +++ ++   G   PT IQ + +P+ L   D+   ++TG+GKT +F+LP +
Sbjct: 1   MQFTDFSLDQRLLQSLKHMGITAPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++       R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRVISTRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +    ++ TPGRI DH  +  L +N +E+L++DEADRMLD+GF P ++ I       R+
Sbjct: 121 AKEPHFIVATPGRIADHLEQKHLFLNGLELLILDEADRMLDLGFAPQLKTINEAADHKRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +              V   +S +E  +         +      L   L
Sbjct: 181 QTLMFSATLDHSEINDIAATLLKNPAHVAIDASHSEHNDIHQRIFLCDHLDHKEALLTRL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +T K  I+F   + +   L   L  QGF+  A+ G++ Q +R +I+  F  G  Q++
Sbjct: 241 LQDETHKQVIVFTATRPDTERLAAKLSTQGFATAALSGDLKQAARNQIMDQFARGQQQIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +   
Sbjct: 301 VTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNFKK 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           ++  + K  +       S+ P LE           K  PI + +       K  +     
Sbjct: 361 VQIFLRKTFEI------SVIPGLEA-KFRGLKELSKQTPIKRVAKTSTSAGKTKAKAVKA 413

Query: 420 IPLKESEKISKL 431
            P ++   I+ +
Sbjct: 414 PPSRDKRFITGV 425


>gi|1169228|sp|P46942|DB10_NICSY RecName: Full=ATP-dependent RNA helicase-like protein DB10
 gi|563986|dbj|BAA03763.1| RNA helicase like protein DB10 [Nicotiana sylvestris]
          Length = 607

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 130/378 (34%), Positives = 203/378 (53%), Gaps = 2/378 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   G   ++V  +  AG+  PTPIQ ++ P+ LQ  D+  IA+TG+GKT  +++P   
Sbjct: 146 SFEATGFPSEIVREMHQAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLMPAFI 205

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L++ R   +  P  L+L PTRELA Q+     K+GK+  ++   L GG P   Q ++L 
Sbjct: 206 HLQQRRKNPQLGPTILVLSPTRELATQIQAEAVKFGKSSRISCTCLYGGAPKGPQLRELS 265

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+++ TPGR+ D     ++ +  +  LV+DEADRMLDMGF P I+ I   VP  RQT
Sbjct: 266 RGVDIVVATPGRLNDILEMRRVSLGQVSYLVLDEADRMLDMGFEPQIRKIVKEVPVQRQT 325

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+++AT    ++K++ + L N  ++ +                      +K   ++Q + 
Sbjct: 326 LMYTATWPKGVRKIAADLLVNSVQVNIGNVDELVANKSITQHIEVVLPMEKQRRVEQ-IL 384

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + II     K + +       + F   AIHG+  Q  R  +LS F+ G   ++V
Sbjct: 385 RSKEPGSKIIIFCSTKKMCDQLSRNLTRNFGAAAIHGDKSQGERDYVLSQFRAGRSPVLV 444

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G A+T  + +D KH   +
Sbjct: 445 ATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGASGLAYTFFSDQDSKHALDL 504

Query: 361 EKLIEKKVDWLNGDLSSL 378
            K++E     +  +L  +
Sbjct: 505 VKVLEGANQCVPTELRDM 522


>gi|306819140|ref|ZP_07452854.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris ATCC 35239]
 gi|304648116|gb|EFM45427.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris ATCC 35239]
          Length = 523

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 141/405 (34%), Positives = 216/405 (53%), Gaps = 17/405 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D G+ P++V A+ D G + P PIQ  T+P+ ++RHD+ G A+TGTGKT  F +P+L 
Sbjct: 33  TFSDFGVEPEIVAALADKGIIHPFPIQALTLPVAIERHDIIGQAKTGTGKTLGFAIPILH 92

Query: 62  ILEKGRARVRM-------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L+L PTRELA QVA        +    +  + GG+ F++
Sbjct: 93  DIIGPGDEGWDELPSPGAPQALVLLPTRELAKQVAAEIRAAASHRVARILEIYGGVGFDS 152

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L+ G +V++ TPGR++D    G+L +  +  LV+DEAD MLDMGF+P ++ + +  
Sbjct: 153 QIQSLKDGVEVVVGTPGRLIDLMKHGELQLKEVRTLVLDEADEMLDMGFLPDVEVLIAAT 212

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  R T+LFSATM   +  ++  ++  P  I    PS  ++T+       Y  +S     
Sbjct: 213 PPERHTMLFSATMPGPVVALARRYMYQPTHIRAADPSDDSKTVRQVHQFAYRVHSMNKEE 272

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +         IIF   K++   L   L  +GF+  AIHG+++Q +R + L  F+ G
Sbjct: 273 VVARILQAKNRGLTIIFTRTKRSCQRLADELTNRGFAAGAIHGDLNQSARERALRAFRHG 332

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV NF+ P   + YIHRIGRT RAG  G A T V  E +
Sbjct: 333 KVDVLVATDVAARGIDVDDVTHVINFECPEDEKTYIHRIGRTARAGHSGTAVTFVDWESV 392

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
                I + +E            L  P E    + H +A  N PI
Sbjct: 393 TRWRVINRALEL----------GLENPTETYHTSAHLYADLNIPI 427


>gi|301762406|ref|XP_002916625.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
           [Ailuropoda melanoleuca]
          Length = 706

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 136/392 (34%), Positives = 216/392 (55%), Gaps = 5/392 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI---LEKG 66
           P+V+  +  AG+ KPTPIQ ++ P+VLQ  D+ G+AQTGTGKT S+++P           
Sbjct: 251 PEVMENIKKAGFQKPTPIQSQSWPIVLQGIDLIGVAQTGTGKTLSYLMPGFIHLDSQPVI 310

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTRELA QV     KY     L    + GG     Q + L++G D++
Sbjct: 311 RGQRNGPGMLVLTPTRELALQVEAECSKYSYK-GLKSVCIYGGGDRNGQIQDLKKGVDII 369

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + ++  LV+DEAD+MLDMGF P I  I   V   RQT++ SAT
Sbjct: 370 IATPGRLNDLQMNNFVNLRSVTYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTIMTSAT 429

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
               ++++++++L+ P  + V T    A +     +    +  K   + Q  L+S     
Sbjct: 430 WPYAVRRLAQSYLKEPMIVYVGTLDLMAVSTVKQNIIVTTEEEKCSHI-QTFLESMSPKD 488

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+F ++K    +L   L  +  SV ++HGN +Q  R + L NFK G +++++A+DLA+
Sbjct: 489 KVIVFVSRKATADHLSSDLILRHVSVESLHGNREQSDRERALENFKTGKVRILIATDLAS 548

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLD+ D+ HV+N+D P   E Y+HR+GRTGRAGR G + TL+ + D +    +  ++E+
Sbjct: 549 RGLDVLDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGISITLLTRNDWRVAGELINILER 608

Query: 367 KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
               +  DL ++    E   + +    +   P
Sbjct: 609 AQQSIPEDLVAMAKRYEANKLKKEMEEKLGKP 640


>gi|291166137|gb|EFE28183.1| ATP-dependent RNA helicase DeaD [Filifactor alocis ATCC 35896]
          Length = 539

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 145/404 (35%), Positives = 229/404 (56%), Gaps = 12/404 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  +S ++  A+   G+ + T IQ   IP+  +  D+ G +QTGTGKT +F +P+L 
Sbjct: 3   KFTEFNISKEIQMALEQLGFEEATIIQELAIPIATEGKDLIGQSQTGTGKTFAFGIPILD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + +        + L++ PTRELA QV++ F+K      +    + GG   + Q K L++
Sbjct: 63  NILQNNN--HQIQALVICPTRELAVQVSNEFDKLTAFTKIRNIAVYGGEYIDKQIKGLKK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILDH  R  + ++++  +V+DEAD MLDMGFI  I+NI       RQT+
Sbjct: 121 KVQIVIGTPGRILDHIERKTIKLDHVRFVVLDEADEMLDMGFIEDIENILRETSEERQTM 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+  +S+ +L+NP+ I V   + T + IE  ++          + +   +  
Sbjct: 181 LFSATMPAEILSLSKKYLKNPEMIRVKNKTMTVDQIEQIYMKVKNADK---SEVLSRILQ 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            ++ K  IIFCN KK V  L   ++ +G++V A+HG++ Q+ R  +L+ F+EG I +++A
Sbjct: 238 LESSKKAIIFCNTKKMVDELVVDMQNRGYAVEALHGDLKQQKRDMVLNRFREGQISMLIA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI DV  V N+D+P   E Y+HRIGRTGRAG  GK+++     DI+ +  IE
Sbjct: 298 TDVAARGLDIRDVDLVINYDLPIEEEQYVHRIGRTGRAGASGKSYSFAYGRDIERLRRIE 357

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           K  + K+      +   +   EKI      H        QK++G
Sbjct: 358 KYAKCKIKE--ESIPRYDKVKEKI-----IHQYIEGIRSQKNSG 394


>gi|298345284|ref|YP_003717971.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 43063]
 gi|315655703|ref|ZP_07908601.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 51333]
 gi|298235345|gb|ADI66477.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 43063]
 gi|315489767|gb|EFU79394.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 51333]
          Length = 525

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 151/497 (30%), Positives = 242/497 (48%), Gaps = 54/497 (10%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  + P++V A+ D G + P PIQ  T+P+ L R D+ G A+TGTGKT  F +P+L 
Sbjct: 27  TFADFDVEPEIVAALRDQGIIHPFPIQALTLPVALNRQDIIGQAKTGTGKTLGFAIPILH 86

Query: 62  IL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L++ PTRELA QVA        +    +  + GG+ F++
Sbjct: 87  DIIGPGDEGWDEIPDSGFPQALVILPTRELAKQVAAEIRAAATHRVARIIEIYGGVGFDS 146

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L +G +V++ TPGR++D  N+G L +  I  LV+DEAD MLDMGF+P ++ + S +
Sbjct: 147 QIEALRKGVEVVVGTPGRLIDLMNQGTLKLGRIRTLVMDEADEMLDMGFLPDVEKLISQI 206

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  R T+LFSATM   +  ++  ++  P  I    P+ +++T+       Y  +S     
Sbjct: 207 PPHRHTMLFSATMPGPVVALARRYMYQPTHIRATDPTDSSQTVRQVKQVVYRVHSLNKTE 266

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +         IIF   K+    L   L ++GF+  AIHG++ Q +R + L  F+ G
Sbjct: 267 VIARILQARNRGLTIIFTRTKRTCQRLSDELAERGFATGAIHGDLGQNARERALRAFRHG 326

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N++ P   + YIHRIGRT RAG  G A T +  ED+
Sbjct: 327 KVDVLVATDVAARGIDVDDVTHVINYECPEDDKTYIHRIGRTARAGNKGSAITFIDWEDL 386

Query: 355 KHIDAIEKLIEKKVDW------------------LNGDLSSLNPPLEKI----------D 386
                I + ++  +D+                  +  D ++  P   ++          D
Sbjct: 387 TRWRVINRTLD--LDFADPQETYHTSPHLYSDLDIPTDATAYLPRFRRVRAGLEAEELED 444

Query: 387 IAQHNHARKNNPIPQKSTGFDRRKKN-----YSSQKSHIPLKESEKISKL---------- 431
           +   + AR       K +G  RRK         + K     KE EK +K           
Sbjct: 445 LGGRDPARPGKRHAGKGSGAGRRKSEKGRGTRKNTKKKHDFKEREKTTKRGATEEPAKKE 504

Query: 432 --QQDIQENDADSLGFR 446
             ++  + + +D  G  
Sbjct: 505 RQRKRTRRHKSDKTGKG 521


>gi|238506126|ref|XP_002384265.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Aspergillus flavus
           NRRL3357]
 gi|220690379|gb|EED46729.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Aspergillus flavus
           NRRL3357]
          Length = 453

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 125/408 (30%), Positives = 195/408 (47%), Gaps = 12/408 (2%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM 72
           +  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L  +     + + 
Sbjct: 1   MMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQA 60

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
              LIL PTRELA Q +   +  GK+  + V +  GG        +L     +L+ TPGR
Sbjct: 61  ---LILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGR 117

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           +LD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ +LFSAT    ++
Sbjct: 118 VLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQVMLFSATFPLIVK 177

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
                F     R           T+            K+       L S+  +   IIFC
Sbjct: 178 S----FKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFC 233

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
           N    V  L   + + G+S    H  + Q+ R ++  +F+ G  + +V SDL  RG+DI 
Sbjct: 234 NSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQ 293

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
            V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  IE+ +  ++  + 
Sbjct: 294 AVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKIEQELGTEIQPIP 353

Query: 373 GDLSSL-----NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            ++        +P      IA  + A+      Q     +RR  N+S+
Sbjct: 354 QNIDKKLYVYESPETIPRPIANASQAQLATSGNQTQNMGERRHNNHSN 401


>gi|167752757|ref|ZP_02424884.1| hypothetical protein ALIPUT_01018 [Alistipes putredinis DSM 17216]
 gi|167659826|gb|EDS03956.1| hypothetical protein ALIPUT_01018 [Alistipes putredinis DSM 17216]
          Length = 393

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 151/389 (38%), Positives = 220/389 (56%), Gaps = 24/389 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L ++  ++ A+ + GY+ PTPIQ K IP+ L   D+ GIAQTGTGKTA+F +P+L
Sbjct: 3   MTFNELKITDPILKAIGEKGYLAPTPIQQKGIPVALDGRDMLGIAQTGTGKTAAFAIPIL 62

Query: 61  TILEKGR--------------------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYN 100
             L  G                       VR  R LIL PTRELA Q+ D+F  YGK   
Sbjct: 63  QHLSSGMQAEPTDVPRRNRRGRNHGREYGVRPIRALILTPTRELAVQIGDSFSDYGKYVG 122

Query: 101 LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160
           L    + GG+    Q + L  G D+LI TPGR+ D   +  + ++ I   V+DEADRMLD
Sbjct: 123 LKHLTIFGGVKQGPQVEALRGGVDILIATPGRLHDLIGQRFVELDAITHFVLDEADRMLD 182

Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
           MGF+  I+ +  L+P +RQTL FSATM  ++  +S++ L +P R+EV   +S  + I+  
Sbjct: 183 MGFVADIKRLLPLLPKSRQTLFFSATMPADIVALSKSMLTDPVRVEVTPVASAVDAIDQR 242

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
                    KK  +       ++  K+ ++F   K    N+   L K G    AIHGN  
Sbjct: 243 VYFVEKPEKKKLLVSLL----REEDKSVLVFSRTKHGADNISRLLSKSGIRSEAIHGNKS 298

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q  R ++L++FK G I++MVA+D+AARG+DI ++  V N+D+P+  E Y+HRIGRTGRAG
Sbjct: 299 QNHRQRVLTDFKSGKIRVMVATDIAARGIDIRELEIVINYDLPDVPETYVHRIGRTGRAG 358

Query: 341 RHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
             G A T    ++   +  I++L  KK++
Sbjct: 359 HSGTALTFCTPDERPLMKDIQRLTGKKLN 387


>gi|254286146|ref|ZP_04961106.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
 gi|150423815|gb|EDN15756.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
          Length = 397

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 149/373 (39%), Positives = 219/373 (58%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V  V   GY KPT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YGK+  L    + GG+  +AQ ++L
Sbjct: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  +++P  I +    ++   I    +                 
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 238 INEHQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357

Query: 360 IE----KLIEKKV 368
           IE     LIE++V
Sbjct: 358 IESRLGHLIERRV 370


>gi|325295336|ref|YP_004281850.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065784|gb|ADY73791.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 425

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 144/397 (36%), Positives = 222/397 (55%), Gaps = 10/397 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L  KV  ++ + G+  PTPIQ + IPL L+ +D+ G AQTGTGKTA+F +P++ 
Sbjct: 14  TFNQLDL--KVQKSLEEMGFESPTPIQKEAIPLALEGYDIVGQAQTGTGKTAAFGIPIIE 71

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +    +R R  + ++L PTRELA QVA      GKN  ++   + GG+  E Q      
Sbjct: 72  NI---NSRERGVKAIVLTPTRELAIQVAHELSLIGKNKGVSAYPIYGGVSIERQANILKR 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  +RG L ++ +   V+DEAD+MLDMGFI  I+ I S  P  +QT
Sbjct: 129 GRNQIVVGTPGRVKDLISRGLLKLDRVRFAVLDEADQMLDMGFIEDIEEILSKTPREKQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E++K+ +N+L++  +      +     +           S+      + L 
Sbjct: 189 LLFSATMPYEIRKLIDNYLKSGYKTIKVGKNLITPKV---HQRIIFVKSEDKLKALEKLL 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + I+F   K++   +   L+K+  +  AIHG++ QR R  ++  FKEG ++ +V
Sbjct: 246 KEHQGTSTIVFVKTKRDAAEIEKELQKRSINARAIHGDLSQRQRENVMKAFKEGKVKTLV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DVG V N+++P   E+Y+HRIGRTGRAGR G A +LVA  + + I  I
Sbjct: 306 ATDVAARGIDIKDVGLVINYELPENPESYVHRIGRTGRAGREGTAISLVADNEKRRIYRI 365

Query: 361 EKLIEKKVDWLNG-DLSSLNPPLEKIDIAQHNHARKN 396
           + L   K +     DL  L   L   D+ + +   + 
Sbjct: 366 KGLKHIKPEKFKANDLRDLKQDLLSADVGKVSEKIRK 402


>gi|91205891|ref|YP_538246.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii RML369-C]
 gi|157826748|ref|YP_001495812.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii OSU 85-389]
 gi|91069435|gb|ABE05157.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii RML369-C]
 gi|157802052|gb|ABV78775.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii OSU 85-389]
          Length = 411

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 145/423 (34%), Positives = 223/423 (52%), Gaps = 27/423 (6%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
            +  L  ++   +      +PT IQ ++IP+ +   D+   +QTG+GKT +++LP++   
Sbjct: 2   KNFNLPEELTTTLEAMKITEPTEIQKQSIPVAIAGSDILASSQTGSGKTLAYLLPVINAF 61

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            K +       TLIL PTRELA Q+     K   ++ +  A+LIGG P   Q  +L++  
Sbjct: 62  IKDKT-----TTLILVPTRELATQICSTLNKVTTSFKINNAVLIGGEPMPKQFTQLKKNP 116

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG    ++ I   +P  RQ L+F
Sbjct: 117 KVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMF 176

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM   +  +S+ +L NP RI V   +  A  I+   V    +        +   Q  D
Sbjct: 177 SATMPKHIISLSQKYLNNPVRITVGATNKAAAEIKQESVHITDKEK----FTELNKQLGD 232

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
              + IIF   K++   L   L  +     AIHG++ QR R +++ +F++   ++MVA+D
Sbjct: 233 REGSVIIFVKTKRSADQLAKMLRYENHKAEAIHGDLSQRQRDRVILSFRKSNHRIMVATD 292

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARGLDIP   HV N+D+P   E+Y+HRIGRTGRAG  G A + ++ +D+    AI++L
Sbjct: 293 VAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGAKGNALSFISPDDVIRWRAIDRL 352

Query: 364 IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLK 423
           I +            + P E          R N    ++S G +RR  N + +      +
Sbjct: 353 INQ----------GESTPRESF--------RSNKNNRKRSFGNNRRGDNSNKRFGSSNKR 394

Query: 424 ESE 426
            SE
Sbjct: 395 SSE 397


>gi|145352866|ref|XP_001420755.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580990|gb|ABO99048.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 466

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 142/450 (31%), Positives = 223/450 (49%), Gaps = 19/450 (4%)

Query: 2   DFADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F DLG+  ++  A     G+  PTPIQ   +P  L+  DV G+AQTG+GKT +F LP+L
Sbjct: 18  TFEDLGVCAELADACAKIMGWRAPTPIQCAAVPEALRERDVIGLAQTGSGKTGAFALPIL 77

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-L 119
             L            LIL PTRELA Q+A+  E  G       A L+GG+    Q  K  
Sbjct: 78  QSLLDAPQGFHS---LILSPTRELAMQIAEQIETLGAGVGARTATLVGGVDMTTQAIKLG 134

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +R   ++      +    N     +  +++LV+DEADR+L++ F   I  I  ++P  R+
Sbjct: 135 KRPHVIVGTPGRVVDHLENTKGFSLRALKVLVLDEADRLLNLDFEEEIDKILRVIPSDRR 194

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT+++ K+    L++P ++EV+   ST E++           +K        L
Sbjct: 195 TQLFSATMTNKVAKLQRACLRDPVKVEVSAKYSTVESL---KQHYLFIPAKHKDCYATYL 251

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++ +    I+F         L       GF    IHG + Q  R+  L  FK G   ++
Sbjct: 252 FNELSASTLIVFARTCDATRKLALIARNLGFGAVPIHGQMSQPKRIAALQKFKSGERNIL 311

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLDIP V  V N+DVP  +++Y+HR+GRT RAGR G A T+V + D++    
Sbjct: 312 IATDVASRGLDIPSVDVVINYDVPQNSKDYVHRVGRTARAGRSGLAVTMVTQYDVELYQK 371

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+LI KK+D    +  ++    ++++ AQ           Q+    D RK     + + 
Sbjct: 372 IERLINKKLDKYPLEEEAVMLLYDRVNEAQ-------RIAIQQMRDQDERK----GKGAK 420

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNM 449
              K+ +   K+   + + D    G R  +
Sbjct: 421 RGFKDDDDADKMLNILGKKDYGGGGGRARV 450


>gi|291395377|ref|XP_002714089.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 4
           [Oryctolagus cuniculus]
          Length = 692

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 132/422 (31%), Positives = 211/422 (50%), Gaps = 18/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 256 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 315

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L +          ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 316 AHLMREGVTASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVMYGGTQLGH 375

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 376 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 435

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       V    QYSK
Sbjct: 436 GMPSKEQRQTLMFSATFPEEIQRLAGEFLKSTYLFVAVGQVGGACRDVQQTVVQIGQYSK 495

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 496 REKLVE--ILRNTGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 553

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 554 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 613

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L      +   LE+I  + +      +         D RK
Sbjct: 614 PESDNH------LAQPLVKVLTDAQQDVPAWLEEIAFSTYTPGFSGSTRGNMFASVDTRK 667

Query: 411 KN 412
             
Sbjct: 668 GK 669


>gi|291395375|ref|XP_002714088.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3
           [Oryctolagus cuniculus]
          Length = 706

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 132/422 (31%), Positives = 211/422 (50%), Gaps = 18/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 270 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 329

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L +          ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 330 AHLMREGVTASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVMYGGTQLGH 389

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 390 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 449

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       V    QYSK
Sbjct: 450 GMPSKEQRQTLMFSATFPEEIQRLAGEFLKSTYLFVAVGQVGGACRDVQQTVVQIGQYSK 509

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 510 REKLVE--ILRNTGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 567

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 568 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 627

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L      +   LE+I  + +      +         D RK
Sbjct: 628 PESDNH------LAQPLVKVLTDAQQDVPAWLEEIAFSTYTPGFSGSTRGNMFASVDTRK 681

Query: 411 KN 412
             
Sbjct: 682 GK 683


>gi|114149265|sp|Q3MSQ8|DDX4_RANLE RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog
 gi|76253272|emb|CAH56439.1| DEAD box protein [Rana lessonae]
          Length = 724

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 132/425 (31%), Positives = 213/425 (50%), Gaps = 17/425 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   V  +GYVK TPIQ  +IP+++   D+   AQTG+GKTA+F+LP+L
Sbjct: 286 LTFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPIL 345

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L            ++ P  +I+ PTREL  Q+  +  K+     +   ++ GG     
Sbjct: 346 AHLMVKGVESSAFQTLKEPEAIIVAPTRELINQIYLDARKFSYGTCVRPVVIYGGTQMFH 405

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT--- 171
             K++  G ++L  TPGR+LD   + K+ +  +  LV+DEADRMLDMGF   I+N+    
Sbjct: 406 SLKQISEGCNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADRMLDMGFREDIENLLKSS 465

Query: 172 -SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT    +Q ++   L+      V      A +     V    ++ K
Sbjct: 466 GMPSKEERQTLMFSATFPSSIQSLAREILKPDYLFVVVGQVGGACSDVEQMVIEVDEFGK 525

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K  L++  +  +   +  ++F   KK    +   L ++     +IHG+ +Q+ R   L +
Sbjct: 526 KDKLME--ILQEIGSERTMVFVKTKKKADFIATFLCQEKVPSTSIHGDREQKERETALRD 583

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V +V NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 584 FRTGQCPVIVATSVAARGLDIENVSYVINFDIPDDIDEYVHRIGRTGRCGNTGRAISFFD 643

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
               K  D  +++    V  L+     +   LE++  + H  +   NP   K    D RK
Sbjct: 644 ----KRGDDEQRIARSLVKVLSDAHQEVPAWLEEVAFSAHGSS-AYNPRSNKFASTDDRK 698

Query: 411 KNYSS 415
           +  S 
Sbjct: 699 RGDSR 703


>gi|291165173|gb|ADD81191.1| vasa [Euthynnus affinis]
          Length = 640

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 128/388 (32%), Positives = 205/388 (52%), Gaps = 13/388 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 204 MTFDEAALCESLRKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 263

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + ++ P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 264 QQLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGH 323

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
           Q +++ RG +V+  TPGR+LD   RGK+ +  +  LV+DEADRMLDMGF P ++      
Sbjct: 324 QIREISRGCNVVCGTPGRLLDMIGRGKVGLTKLRYLVLDEADRMLDMGFEPDMRRLVSSP 383

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++Q+++ +FL+             A +          ++SK
Sbjct: 384 GMPSKENRQTLMFSATYPEDIQRLAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSK 443

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +       L     M+  ++F   K+    +   L ++     +IHG+ +QR R + L++
Sbjct: 444 RE--QLLDLLKTTGMERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALAD 501

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDIPDV HV NFD+PN  + Y+HRIGRTGR G  G+A +   
Sbjct: 502 FRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYD 561

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSS 377
            + D +   ++  ++ K    +   L  
Sbjct: 562 PDADGQLARSLVTVLSKAQQEVPSWLEE 589


>gi|307167913|gb|EFN61290.1| Probable ATP-dependent RNA helicase DDX49 [Camponotus floridanus]
          Length = 457

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 122/434 (28%), Positives = 204/434 (47%), Gaps = 12/434 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+DL L+  ++      G   PT IQ   IP +L   D  G A+TG+GKT +F LP+L 
Sbjct: 6   DFSDLKLNSWLLAQCDTMGLKNPTLIQQNCIPRILAGEDCIGCAKTGSGKTLAFALPILQ 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L            L+L PTRELA Q+AD F   GK  NL   +++GG+    Q  +L +
Sbjct: 66  KL---CEDPYGIFALVLTPTRELAFQIADQFAAIGKAINLKKCVVVGGMDMMVQGLELSK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+ DH +            ++ +    L  G               ++ +
Sbjct: 123 RPHIVVATPGRLADHLDSCDTFSLQKIKFLVLDEADRLLGGHFDKQLKKIFAAVPKQKQV 182

Query: 182 LFSATMT----DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           L  +       D++++++ + +   +  +    ++  E  +   +            + +
Sbjct: 183 LLFSATMTDALDKVKQIASSKVFIWEEEDDAGIATVRELDQRYVLCPKDVLDSFLVEVIR 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             ++ +   + +IF +  K+   L   L   GF+  A+H  I Q+ R+  LS FK   +Q
Sbjct: 243 TFRATNKNGSIMIFTDTCKHCQLLSMMLNDVGFTNMALHAMIKQKERLAALSKFKSNHVQ 302

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARGLDIP V  V N  +PN  + YIHR+GRT RAGR+G A +L+   DIK +
Sbjct: 303 ILIATDVAARGLDIPTVELVVNHIIPNVPKEYIHRVGRTARAGRNGMAISLITPNDIKLL 362

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE  I  K+     D   +   L +I +A     ++   I    T F  +K     +K
Sbjct: 363 HMIEDTIGTKLTEYKVDDKEIVTILTQISVA-----KREAEIRLDETDFYEKKMINKRKK 417

Query: 418 SHIPLKESEKISKL 431
             +  K+ ++I +L
Sbjct: 418 LILEGKDPDEIEEL 431


>gi|330811885|ref|YP_004356347.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379993|gb|AEA71343.1| Putative ATP-dependent RNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 445

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 150/370 (40%), Positives = 216/370 (58%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++ A+   GY  PTP+Q + +P VL   D+   AQTGTGKTA F +P+L
Sbjct: 1   MTFATLGLIEPLLRALETLGYQTPTPVQAQAMPAVLAGRDLMAAAQTGTGKTAGFAVPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L     +V     R LIL PTRELA QV ++  +Y +N  L+   + GG+    Q  K
Sbjct: 61  QLLTTEGPKVAANSVRALILVPTRELAEQVHESVRQYAQNLPLSTYAVYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+L+ TPGR+LD F +  L  N ++ LV+DEADRMLD+GF   + NI   +P  R
Sbjct: 121 LRKGVDLLVATPGRLLDLFRQNALKFNQLQTLVLDEADRMLDLGFSEELANIYKALPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D ++ ++   L +P  IEV+  +  A T+            K+   L   
Sbjct: 181 QTLLFSATFSDAIRLLAGQMLNDPLSIEVSPRNVAANTV---KQWVVTVDKKRKPELFVH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  ++  +  ++F   +  V  L   L+  G +   IHG+  Q +R + L  FK   +Q+
Sbjct: 238 LMRKNKWRQVLVFAKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKASEVQI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V NFD+P  AE+YIHRIGRTGRAG  G+A +LV  +++  + 
Sbjct: 298 LVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADEVNLLS 357

Query: 359 AIEKLIEKKV 368
           AIE L  + +
Sbjct: 358 AIEMLTRQTL 367


>gi|281349896|gb|EFB25480.1| hypothetical protein PANDA_006406 [Ailuropoda melanoleuca]
          Length = 383

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 130/385 (33%), Positives = 204/385 (52%), Gaps = 7/385 (1%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           G++  +  A    G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L  L + 
Sbjct: 1   GVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET 60

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLERGADV 125
             R+     L+L PTRELA Q+++ FE  G +  +  A+++G            ++   +
Sbjct: 61  PQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHII 117

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           +      I    N     +  ++ LV+DEADR+L+M F   +  I  ++P  R+T LFSA
Sbjct: 118 IATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSA 177

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           TMT ++QK+    L+NP +  V++   T E ++          SK        + ++   
Sbjct: 178 TMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ---YYLFIPSKFKDTYLVYILNELAG 234

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
            + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++A+D+A
Sbjct: 235 NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVA 294

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    IE LI 
Sbjct: 295 SRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 354

Query: 366 KKVDWLNGDLSSLNPPLEKIDIAQH 390
           KK+         +    E++  AQ 
Sbjct: 355 KKLPVFPTQEDEVMMLTERVTEAQR 379


>gi|220678758|emb|CAX13889.1| novel protein similar to vertebrate DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 43 (DDX43) [Danio rerio]
 gi|220678952|emb|CAX13571.1| novel protein similar to vertebrate DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 43 (DDX43) [Danio rerio]
          Length = 719

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 135/390 (34%), Positives = 216/390 (55%), Gaps = 5/390 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL---EKG 66
           P ++  ++  G+ KPTPIQ +  P+VL   D+ GIAQTGTGKT +++LP    +      
Sbjct: 287 PGIMENIVRVGFKKPTPIQSQAWPVVLNGIDLIGIAQTGTGKTLAYLLPGFIHMDGQPMP 346

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTRELA Q+     KY      ++ +  GG    AQ K +  G D++
Sbjct: 347 RDKRNGPGMLVLTPTRELALQIEAECNKYSYKGFKSICIY-GGGDRNAQIKVVTSGVDIV 405

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + +I  LV+DEADRMLDMGF P I  I   +   RQT++ SAT
Sbjct: 406 IATPGRLNDLQMNELINLRSITYLVLDEADRMLDMGFEPQIMKIILDIRPDRQTVMTSAT 465

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
               ++++++++L++P  + V T    A       V    +  KK  +    +   + + 
Sbjct: 466 WPPGVRRLAKSYLKDPMMVYVGTLDLAAVNTVQQTVLFVQEDEKKDYVFD-FIHRMEPLD 524

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             +IF  +K    +L   L  QG +V ++HG+ +Q  R + L +FK+G ++++VA+DLA+
Sbjct: 525 KVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREEALQDFKDGRVRILVATDLAS 584

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLD+ D+ HVFN+D P   E Y+HR+GRTGRAGR G++ TLV +ED +    +  ++E+
Sbjct: 585 RGLDVHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESVTLVTREDWRVAAELITILER 644

Query: 367 KVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
               +  +L  +    EK    +     ++
Sbjct: 645 SGQDVPEELVLMAERYEKHRREKEMFGPRS 674


>gi|254172736|ref|ZP_04879410.1| cold-shock deAd box protein a [Thermococcus sp. AM4]
 gi|214032892|gb|EEB73720.1| cold-shock deAd box protein a [Thermococcus sp. AM4]
          Length = 392

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 144/382 (37%), Positives = 218/382 (57%), Gaps = 11/382 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           M F +LGLS   + AV   G+  PT IQ + IP +L+   D+ G +QTGTGKTA+F LP+
Sbjct: 1   MSFEELGLSESSLEAVKRKGFETPTDIQREVIPRLLEGDVDIIGQSQTGTGKTAAFALPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  ++     V+     IL PTRELA QVAD  +       + V  + GG P   Q + L
Sbjct: 61  IEAIDPKEKTVQAI---ILTPTRELALQVADEIKSLRGKKRVYVYAIYGGQPIGPQIRAL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG  V++ TPGR+LDH NRG L ++++   V+DEADRMLDMGF+  I+ I    P  ++
Sbjct: 118 ERGVHVVVGTPGRVLDHLNRGTLDLSSVRFFVLDEADRMLDMGFVDDIEEIMRRAPEEKR 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM   +  +++ +++NP+ + V+      E ++  +V             ++L 
Sbjct: 178 ILMFSATMPMGILLLAKKYMRNPEVVLVSRDEIVPEMVDQEYVEVLPARK-----YEKLK 232

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  +    GIIFC+ K+    L   L + GF   A++G++ Q +R +  + FKEG I ++
Sbjct: 233 EVLEEGFYGIIFCHTKRETRELSERLRRDGFRADALNGDMSQAARERTFNRFKEGKINVL 292

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ ++ HV N+ +P   E YIHRIGRTGR G+ GKA T +   +I     
Sbjct: 293 VATDVAARGLDVREISHVINYSLPMNPEQYIHRIGRTGRMGKRGKAITFLEPGEIGRFRG 352

Query: 360 IEKLIEKKVDWLNGDLSSLNPP 381
           I +  + +V+     LS   P 
Sbjct: 353 IAR--KARVEVRRSHLSERIPK 372


>gi|116195380|ref|XP_001223502.1| hypothetical protein CHGG_04288 [Chaetomium globosum CBS 148.51]
 gi|118595827|sp|Q2H1Q8|RRP3_CHAGB RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|88180201|gb|EAQ87669.1| hypothetical protein CHGG_04288 [Chaetomium globosum CBS 148.51]
          Length = 493

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 133/428 (31%), Positives = 216/428 (50%), Gaps = 6/428 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +  A  + G+ KPTPIQ ++IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 66  TFQDLGIVDSLCDACKELGWKKPTPIQQESIPLALQDRDIIGLAETGSGKTGAFALPILQ 125

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    L+L PTRELAAQ+A +FE  G   +L  AL++GG+    Q   L +
Sbjct: 126 AL---LDKPQPLFALVLAPTRELAAQIAQSFEALGSLISLRCALILGGLDMVQQAIALGK 182

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR +          + N+  LV+DEADR+LDM F P +  I   +P  R+T
Sbjct: 183 KPHVVVATPGRLLDHLEKTKGFSLRNLRYLVMDEADRLLDMDFGPILDKILKFLPRERRT 242

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L++P ++ +++      +             K        L 
Sbjct: 243 FLFSATMSSKVESLQRACLRDPLKVSISSSKYQTVSTLVQNYVFIPHTHK--DTYLIYLC 300

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   +  IIF         +   L   G     +HG + Q +R+  L+ F+ G+  ++V
Sbjct: 301 NEFAGQTIIIFTRTVIETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSRDILV 360

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP+V  V N D+P  ++ Y+HR+GRT RAGR G A + V + D++    I
Sbjct: 361 ATDVAARGLDIPNVDCVLNLDLPGDSKTYVHRVGRTARAGRSGHAISFVTQYDLELWLRI 420

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  +  K+   + +   +     +++ AQ     +   +           K    +K   
Sbjct: 421 EAALGTKLTEYSLEKDDVMVFRPRVEEAQRIAKTEIKALMDDRGKKGSVLKGGKGRKRGP 480

Query: 421 PLKESEKI 428
           P    + +
Sbjct: 481 PGSSRDHM 488


>gi|223947385|gb|ACN27776.1| unknown [Zea mays]
          Length = 430

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 128/438 (29%), Positives = 218/438 (49%), Gaps = 34/438 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+  ++V A    G+ +PT IQ + IP  LQ  D+  +AQTG+GKT +F LP+L 
Sbjct: 25  TFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTGAFALPILQ 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   R   +     +L PTRELA Q+A+ FE  G    L  ++L+GG+    Q   + +
Sbjct: 85  ELLSNRQAEQSFFACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSIGK 144

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +                        +V+DEAD++L++ F   + +I S +P  R+T 
Sbjct: 145 RPHI------------------------VVLDEADKLLNVEFEKSLDDILSEMPKDRRTF 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT ++ K+    L+NP ++EV++  ST ++++  F    A       L     + 
Sbjct: 181 LFSATMTKKVNKLQRACLRNPAKVEVSSKYSTVDSLKQEFYFVPADDKDCYLLHVLNERL 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +    IF    ++   L   L   G    +I G + Q  R+  L+ FK     +++ 
Sbjct: 241 ESMIM---IFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKAKDCNILIC 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  V  V N+D+P  +++Y+HR+GRT RAGR G A +LV + + +    IE
Sbjct: 298 TDVASRGLDIQGVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVNQYEAQWFVLIE 357

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           +L+ KK+D    D   +      I     + A++      K +G  ++++N       + 
Sbjct: 358 QLLGKKIDQCKVDRDEVLILKGPI-----SDAKRIALTKLKDSGGHKKRRNVGDDDEEVE 412

Query: 422 LKESEKISKLQQDIQEND 439
              S   S+  + ++ ++
Sbjct: 413 DHSSH--SRRPKSLKRSN 428


>gi|223999113|ref|XP_002289229.1| atp-depedent helicase [Thalassiosira pseudonana CCMP1335]
 gi|220974437|gb|EED92766.1| atp-depedent helicase [Thalassiosira pseudonana CCMP1335]
          Length = 435

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 119/395 (30%), Positives = 190/395 (48%), Gaps = 3/395 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L P ++ ++    +  PT IQ  +IP  L+  DV G+A+TG+GKT SF +P+L 
Sbjct: 40  SFSSLNLHPSLLSSIASLQWTNPTQIQAASIPPALEGRDVIGLAETGSGKTGSFAIPILN 99

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   +      +IL PTRELA Q+ +     G+        ++GG+   +Q   L R
Sbjct: 100 YLLEKPQK--QVFAVILAPTRELAFQIHEVMVALGRGMGANSVCVVGGVDMASQAIALAR 157

Query: 122 GADVLICTPGRI-LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR+     N     +  I+ LV+DEADRML M F   I  I  ++P   + 
Sbjct: 158 NPHVVVATPGRLLDHLQNTKGFHLRQIKYLVMDEADRMLSMDFEKEINEILEVIPDCEKG 217

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
                       KV +    +         S+  +T +          +K        L 
Sbjct: 218 RRTMLFSATMTSKVEKLQRASLVDPVRVEVSTKFQTPKKLLQNYLFIPAKYKDCYLTYLI 277

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ ++F     NV  L   L   GF    +HG + Q  R+  L+ FK G   +++
Sbjct: 278 NEHAGQSILVFGATCNNVQRLALMLRNLGFPAICLHGQMSQPKRLGALTKFKSGGRDILI 337

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A+RGLDIP V  V NFD+P   ++YIHR+GRT RAGR GKA  +V + D++    +
Sbjct: 338 CTDVASRGLDIPSVDVVINFDLPGHGKDYIHRVGRTARAGRSGKAIAMVTQYDVEVYQRL 397

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           E L+  ++         +   LE+++ AQ    R+
Sbjct: 398 EHLLGHRLPEYKLAEEEVLLLLERVNDAQRLATRE 432


>gi|186473980|ref|YP_001861322.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184196312|gb|ACC74276.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 481

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 165/479 (34%), Positives = 246/479 (51%), Gaps = 35/479 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL  +++  V D  Y  PTP+Q+K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIDRLLRNVQDLHYQTPTPVQVKAIPAVLGGKDVMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +    V     R L+L PTRELA QV  +F  YGK  +L      GG+    Q  K
Sbjct: 61  QRLVQHGPAVSSNRVRVLVLVPTRELAEQVLQSFVVYGKGLDLRFLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D+++ ++ NFL+ P  I V+ P++TA  I    V    +      +    
Sbjct: 181 QTLLFSATFSDDIRAMAANFLRGPVHISVSPPNATASKIRQWVVPVDKRNKPDLFMHL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +++   + ++F   +  V  L   L++ G++V  IHG+  Q +R++ L  FK G + +
Sbjct: 239 -VAENNWDHALVFVKTRTGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKAGQVHM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  +  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDHLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEKKV--DWLNGDLSSLNPP--------------------LEKIDIAQHNHARKN 396
           AIE LI + +  +   G  +    P                    L+      H   +K 
Sbjct: 358 AIEALIRQTLPREEEPGFEAEHRVPQTSATGQIIKKPKKPKKPKGLQAAPGDMHLPGKKT 417

Query: 397 NPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLP 455
            P   +S       +  ++Q+     KE+   S     +Q   +     R  + A   P
Sbjct: 418 RPKSGES------NRKPAAQRDAAAGKETSVTSGSPFSVQRPRSKPA--RQPVAAARQP 468


>gi|73996610|ref|XP_862993.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 3 [Canis familiaris]
 gi|119578414|gb|EAW58010.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, isoform CRA_a [Homo
           sapiens]
          Length = 634

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 141/434 (32%), Positives = 209/434 (48%), Gaps = 35/434 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 206 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 265

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q
Sbjct: 266 WITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 325

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 326 GFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMP 385

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            + Q          E    +    ++  R  V   ++                       
Sbjct: 386 VSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 445

Query: 215 --ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             +  E      +     +       +  Q      IIF NQKK    L  SLEK G++ 
Sbjct: 446 AGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNA 505

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHR
Sbjct: 506 CTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHR 565

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     AQH  
Sbjct: 566 IGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHKP 619

Query: 393 ARKNNPIPQKSTGF 406
                   ++ T F
Sbjct: 620 GTILTKKRREETIF 633


>gi|270014204|gb|EFA10652.1| hypothetical protein TcasGA2_TC016289 [Tribolium castaneum]
          Length = 619

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 128/395 (32%), Positives = 205/395 (51%), Gaps = 16/395 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L   ++  + +    KPTPIQI+ IP VL   D+ GIA TG+GKT  FVLP++ 
Sbjct: 179 TFREMKLHEGIISGLKEKKIKKPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFVLPLIM 238

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGI 110
              +   ++       P  LI+ P+RELA Q  D  + +  +        +  +L IGG+
Sbjct: 239 FCLEQEVKLPFIKNEGPYGLIICPSRELAKQTFDIIQHFCNSLRKHGMPEIRTSLAIGGV 298

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
           P       ++RG  +++ TPGR++D   +  + ++    L +DEADRM+D+GF   ++ I
Sbjct: 299 PVSEAVDVIQRGVHIMVATPGRLMDMLEKKIVKLSVCRYLCMDEADRMIDLGFEEDVRTI 358

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 359 FSYFNGQRQTLLFSATMPKKIQN----FARSALVKPVTINVGRAGAASMNVIQEVEYVKQ 414

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K++V  +   L  +G    AIHG  DQ  R + +  
Sbjct: 415 EAKVVYLLECLQKTPPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERSRSVEA 474

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F++    ++VA+D+A++GLD PD+ HV N+D+P+  ENY+HRIGRTGR+G+ G A T + 
Sbjct: 475 FRKHEKDVLVATDVASKGLDFPDIQHVINYDMPDDVENYVHRIGRTGRSGKQGLATTFIN 534

Query: 351 K-EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
           K  D   +  ++ L+ +    +   LS L    EK
Sbjct: 535 KSNDESVLLDLKHLLMEAKQKVPAFLSELCSESEK 569


>gi|85060366|ref|YP_456068.1| ATP-dependent RNA helicase RhlB [Sodalis glossinidius str.
           'morsitans']
 gi|123518632|sp|Q2NQB2|RHLB_SODGM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|84780886|dbj|BAE75663.1| ATP-dependent RNA helicase [Sodalis glossinidius str. 'morsitans']
          Length = 415

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 133/407 (32%), Positives = 205/407 (50%), Gaps = 10/407 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P +V  +   G+   TPIQ  T+P  L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALYPPIVEVLDSKGFNNCTPIQALTLPTTLAGKDVAGQAQTGTGKTLAFLTATFH 69

Query: 62  ILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L         +   PR LI+ PTRELA Q+  + E   +   L + L  GG  ++ Q K
Sbjct: 70  HLLTHPAAEGRQTNQPRALIMAPTRELAVQIHSDAEPLAQATGLKMGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+L+ T GR++D+  +  + M+ I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLEAGVDILVGTTGRLIDYTKQNYVNMSAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
              L    + T   +     F        V       +T        +   +++   L Q
Sbjct: 190 AGRLNMLFSATLSYRVRELAFEHMNNAEYVEVEPLQ-KTGHRIQEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R++IL  F +G + 
Sbjct: 249 TLIEEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVSQKRRLRILEKFTQGALD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGCSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIP 400
            AIE  I  ++     +    L+ L  P +++   +    R N   P
Sbjct: 369 TAIESYIGHQIPVSKYNSDALLTDLPAP-KRLTRRRSGAPRHNRKRP 414


>gi|15668850|ref|NP_247653.1| DEAD-box ATP dependent DNA helicase [Methanocaldococcus jannaschii
           DSM 2661]
 gi|2500540|sp|Q58083|H669_METJA RecName: Full=Probable ATP-dependent RNA helicase MJ0669
 gi|1591383|gb|AAB98663.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 367

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 131/373 (35%), Positives = 213/373 (57%), Gaps = 14/373 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           M+F +L LS  ++ A+ + G+ KPT IQ+K IPL L    ++   A+TG+GKTASF +P+
Sbjct: 6   MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPL 65

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + ++            +IL PTRELA QVAD  E    N NL +A + GG     Q  K 
Sbjct: 66  IELVN----ENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQI-KA 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            + A++++ TPGRILDH NRG L + N++  ++DEAD ML+MGFI  ++ I +     ++
Sbjct: 121 LKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  E+  +++ +        +   S     I      +Y + ++         
Sbjct: 181 ILLFSATMPREILNLAKKY--------MGDYSFIKAKINANIEQSYVEVNENERFEALCR 232

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++    G++FC  K++   L   L   GF   AIHG++ Q  R K++  FK+  I+++
Sbjct: 233 LLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRIL 292

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+ +RG+D+ D+  V N+ +P   E+Y+HRIGRTGRAG+ GKA +++ + + K +  
Sbjct: 293 IATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRY 352

Query: 360 IEKLIEKKVDWLN 372
           IE+ ++ K+  L 
Sbjct: 353 IERAMKLKIKKLK 365


>gi|114643643|ref|XP_001153944.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
          Length = 443

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 133/428 (31%), Positives = 216/428 (50%), Gaps = 7/428 (1%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           G++  +  A    G+ KPT IQI+ IPL LQ  D+ G+A+TG+GKT +F LP+L  L + 
Sbjct: 18  GVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET 77

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLERGADV 125
             R+     L+L PTRELA Q+++ FE  G +  +  A+++G            ++   +
Sbjct: 78  PQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHII 134

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           +      I    N     +  ++ LV+DEADR+L+M F   +  I  ++P  R+T LFSA
Sbjct: 135 IATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSA 194

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           TMT ++QK+    L+NP +  V++   T E ++          SK        + ++   
Sbjct: 195 TMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ---YYIFIPSKFKDTYLVYILNELAG 251

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
            + +IFC+   N       L   GF+   +HG + Q  R+  L+ FK     +++A+D+A
Sbjct: 252 NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVA 311

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    IE LI 
Sbjct: 312 SRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 371

Query: 366 KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKES 425
           KK+         +    E++  AQ     +     +K         +    +  I ++  
Sbjct: 372 KKLPGFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSREDAGDNDDTEGAIGVRNK 431

Query: 426 EKISKLQQ 433
               K+++
Sbjct: 432 VAGGKMKK 439


>gi|91792775|ref|YP_562426.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91714777|gb|ABE54703.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 468

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 129/423 (30%), Positives = 206/423 (48%), Gaps = 8/423 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F+D  L  +++ ++   G   PTPIQ + +P+ L   D+   ++TG+GKT +F+LP M
Sbjct: 12  LQFSDFSLDKRLLDSLKHLGITTPTPIQEQALPIALTGKDLMASSKTGSGKTLAFLLPAM 71

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I+       R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 72  QRIISTKALSKRDPRVLILLPTRELAQQVYGQLRLLVANTQYKAVSILGGENFNDQAKAL 131

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGRI DH  +  L +N +E+L++DEADRMLD+GF P +  I +     R+
Sbjct: 132 SREPHFIVATPGRIADHLQQRHLHLNGLELLILDEADRMLDLGFAPQLAAINAAADHKRR 191

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   +  +              +   ++  E  +         +      L + +
Sbjct: 192 QTLMFSATLEHDEINEIAATLLKSPNHIAIGAAYTEHADITQRIILVDHLDHKQALLEHV 251

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +T K  IIF   + +   L   L  +GF+  A+ GN++Q +R +I+  F  G  Q++
Sbjct: 252 LTNETNKQIIIFTATRVDTERLASLLADKGFATAALSGNLNQGARNQIMDQFARGQKQIL 311

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D      
Sbjct: 312 VTTDVASRGLDLINVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAVSLVGPKDWDSFIK 371

Query: 360 IEKLIEKK-----VDWLNGDLSSLNPPLE--KIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           ++  + K      +D L    S L    +  K++  +      +      +    +R K 
Sbjct: 372 VQAFLRKTFEFTVIDGLKAKFSGLKAKAKTDKVNSTKRVAKAASKAKSPHAKPAPKRDKR 431

Query: 413 YSS 415
           +S+
Sbjct: 432 FST 434


>gi|293376735|ref|ZP_06622957.1| ATP-dependent RNA helicase DbpA [Turicibacter sanguinis PC909]
 gi|325845681|ref|ZP_08168964.1| ATP-dependent RNA helicase DbpA [Turicibacter sp. HGF1]
 gi|292644601|gb|EFF62689.1| ATP-dependent RNA helicase DbpA [Turicibacter sanguinis PC909]
 gi|325488282|gb|EGC90708.1| ATP-dependent RNA helicase DbpA [Turicibacter sp. HGF1]
          Length = 479

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 138/399 (34%), Positives = 233/399 (58%), Gaps = 12/399 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  ++ ++   GY   T +Q   IP VL + D+   ++TG+GKTA+F +P+  +
Sbjct: 4   FNELQLSESILKSLTGLGYEHATEVQASVIPTVLNKQDLIVQSKTGSGKTAAFGIPICEM 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +   P+ LIL PTRELA Q+ +     G+   + V  + G  PF+ Q ++L++ 
Sbjct: 64  LDWDENK---PQALILTPTRELALQIKEEISNIGRFKRIKVTAVYGKSPFKEQARELKQK 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ DH  RG L ++ + + V+DEAD ML MGFI  ++NI +  P  RQT+L
Sbjct: 121 THIVVGTPGRVQDHLERGTLSLDKLSLFVLDEADEMLKMGFIEVVENIMNEAPRKRQTML 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM D ++K+S+++L +P+ I++ +P+ T + +EH   A Y    ++   L Q L   
Sbjct: 181 FSATMPDRIKKLSQHYLTHPQEIKIESPTLTTDLVEH---ALYEVREQEKVKLLQDLLMV 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  +  +IFC+ K+ V  L  +L ++G+ +  +HG +DQ+ R + + NFK G    +V++
Sbjct: 238 ENPERCMIFCSTKEAVDALYRNLSQKGYPIERLHGGLDQKERFETMKNFKIGRFAYLVST 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+D+  V HV N+D+P   ++++HRIGR GRAG+ GKA T   + D + ++ I+ 
Sbjct: 298 DVAARGIDVSGVSHVINYDLPPEKDSFVHRIGRAGRAGQKGKAITFATRFDQRWLEEIQA 357

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            I  ++           P  +    A+    +K N  P 
Sbjct: 358 YIGFELPICE------RPSEDVTQQAKDGFMKKLNSRPT 390


>gi|270016295|gb|EFA12741.1| Rm62 [Tribolium castaneum]
          Length = 776

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 122/370 (32%), Positives = 202/370 (54%), Gaps = 5/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F +      V   +   GY  PT IQ +  P+ +   D+ GIAQTG+GKT +++LP   
Sbjct: 128 NFEEACFPDYVQHEIQKQGYDTPTAIQAQGWPIAMSGKDLVGIAQTGSGKTLAYILPAIV 187

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +   AR   P  L+L PTRELA Q+      +G +  +    + GG P   Q + L
Sbjct: 188 HINNQPSIARGDGPIALVLAPTRELAQQIQQVAHDFGSSSYVRNTCIFGGAPKGPQARDL 247

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG ++ I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 248 ERGVEICIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 307

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL---Q 236
           TL++SAT   E++K++++FL+N  +I + +   +A       V    ++ K+  L    Q
Sbjct: 308 TLMWSATWPKEVRKLAQDFLRNYVQINIGSLQLSANHNILQIVDVCQEHEKETKLNNLLQ 367

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++  + +     IIF   KK V ++  ++ + G+    +HG+  Q+ R  +L  F+ G  
Sbjct: 368 EIGNNGEPGAKIIIFVETKKKVESITRTIRRYGWPAVCMHGDKSQQERDFVLREFRNGKS 427

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARGLD+  + +V N+D PN +E+YIHRIGRTGR+   G ++      + + 
Sbjct: 428 SILIATDVAARGLDVEGIKYVINYDYPNSSEDYIHRIGRTGRSDTTGTSYAFFTPSNFRQ 487

Query: 357 IDAIEKLIEK 366
              +  ++++
Sbjct: 488 AKDLVSVLKE 497


>gi|164656240|ref|XP_001729248.1| hypothetical protein MGL_3715 [Malassezia globosa CBS 7966]
 gi|159103138|gb|EDP42034.1| hypothetical protein MGL_3715 [Malassezia globosa CBS 7966]
          Length = 885

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 135/450 (30%), Positives = 215/450 (47%), Gaps = 20/450 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL    +  +   GYV PTPIQ + IP ++   D+ G+A+TG+GKT +F+LPM  
Sbjct: 254 KWSHCGLPVNCLDVIKKLGYVAPTPIQSQAIPAIMSGRDMIGVAKTGSGKTMAFLLPMFR 313

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               ++       P  L++ PTRELA Q+  + + + + +NL  A   GG P   Q  ++
Sbjct: 314 HVKDQRPVESGEGPVALVMTPTRELAVQIFRDAQPFLRAFNLRGACAYGGTPISEQIGEM 373

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++  +V++ TPGR++D     +     M  +  LV+DEADRM D+GF P +  I  L+  
Sbjct: 374 KKLVEVVVATPGRMIDLLTANSGRVTNMQRVTYLVLDEADRMFDLGFEPQVMKILGLIRP 433

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA--L 234
            RQT+LFSAT    ++ ++   L++     +    S         V      SK      
Sbjct: 434 DRQTVLFSATFPKPMESLARKMLRHEPLEVIVGGRSVVAAEIRQIVEVRPDSSKFHRLLE 493

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   L   D     +IF +++     L H L K+G+   ++HG  DQ  R   L++FK G
Sbjct: 494 ILGQLYHHDEDARTLIFVDRQDAADELMHMLMKRGYPTMSLHGGKDQADRDTTLADFKAG 553

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++ A+ +AARGLD+  +  V N+DVPN  E+Y+HR GRTGRAG  G   T +  E  
Sbjct: 554 IVPILTATSVAARGLDVKQLKLVVNYDVPNHLEDYVHRAGRTGRAGNQGTCVTFITPEQD 613

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           ++   I       V  L    +++ P LE +  +Q     +        +GF  R     
Sbjct: 614 RYAKDI-------VAALRASKATVPPELEAL-ASQFKEKLQQGKAHASGSGFGGRGLERL 665

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLG 444
                  L+    I      I++ DAD   
Sbjct: 666 EASRERLLQAQASIF-----IEDEDADPEA 690


>gi|156099810|ref|XP_001615701.1| RNA helicase-1 [Plasmodium vivax SaI-1]
 gi|5679692|emb|CAB51741.1| RNA helicase-1 [Plasmodium cynomolgi]
 gi|148804575|gb|EDL45974.1| RNA helicase-1, putative [Plasmodium vivax]
          Length = 398

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 199/378 (52%), Gaps = 7/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL+ K++  +   G+ KP+ IQ + I  +L  +D  G AQ+GTGKTA+FV+  L 
Sbjct: 24  TFDALGLNEKLLRGIYSYGFEKPSAIQQRGIKPILNGYDTIGQAQSGTGKTATFVISSLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++          + LIL PTRELA Q+       G    +     +GG        KL++
Sbjct: 84  LINYDY---VACQALILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDIDKLKQ 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D  ++  L ++ +++ ++DEAD ML  GF   I  +   +    Q  
Sbjct: 141 GVHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQVA 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+ +++  F+++PK I V     T E I   +VA   +  K   L       
Sbjct: 201 LFSATMPQEILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLCDL--YE 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   II+CN +K V  L   +  + F+V  +HG++DQ+ R  I+  F+ G+ +++V 
Sbjct: 259 TLTITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVT 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK--EDIKHIDA 359
           +DL ARG+D+  V  V N+D+P   + YIHRIGR+GR GR G A   V    ++   +  
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPCSPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDKLKK 378

Query: 360 IEKLIEKKVDWLNGDLSS 377
           IE     +++ +  +++ 
Sbjct: 379 IESYYSTQIEEMPLEVAD 396


>gi|159475485|ref|XP_001695849.1| hypothetical protein CHLREDRAFT_118630 [Chlamydomonas reinhardtii]
 gi|158275409|gb|EDP01186.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 710

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 130/436 (29%), Positives = 223/436 (51%), Gaps = 17/436 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   GLS +++  +   G+ +P PIQ + +P+++   D  GIA+TG+GKT +FVLPM+ 
Sbjct: 55  SWTQAGLSSRILEVLKKRGFDRPLPIQAQALPIIMSGRDCIGIAKTGSGKTGAFVLPMMR 114

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++  R   +   P  L++ PTREL AQ+A   + + K   L    + GG     Q  +L
Sbjct: 115 HIKDQRPLEQGDGPVALVIAPTRELVAQIAKEAKAFAKPLGLNALAVFGGSGVANQITEL 174

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RG +++ CTPGR++D     N     +  +  LV+DEADRM DMGF P I  I   +  
Sbjct: 175 KRGVEIVACTPGRMIDLLVTSNGKITNLRRVTYLVMDEADRMFDMGFEPQISRIIQNIRP 234

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   LQ+P  I+V   S   ++             ++   L 
Sbjct: 235 DRQTVMFSATFPRAVEALARKVLQDPVEIQVGGRSVVNDS--ITQWVELRPEKERFHRLL 292

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           ++L         +IF +++++  NL   L + G+   ++HG  DQ  R   +++FK    
Sbjct: 293 EILGEWYERGKLLIFVDKQESCDNLFRDLLRYGYPCLSLHGGKDQSDRESTIADFKGAVC 352

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR--IGRTGRAGRHGKAFTLVAKEDI 354
            ++VA+ +AARGLD+ D+  V N+DVPN  E+Y+HR  +GRTGRAG  G A T +++E+ 
Sbjct: 353 NILVATSIAARGLDVKDLVLVVNYDVPNHHEDYVHRCVVGRTGRAGAKGTAITFISEEEE 412

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           ++   + K + +    +  DL +L            N   K   +    +G+      + 
Sbjct: 413 RYAPDLVKALRESGAPVPQDLQALADSF--------NTKHKAGLVKAHGSGYGGSGFKFD 464

Query: 415 SQKSHIPLKESEKISK 430
           + +      + +  +K
Sbjct: 465 TNEEERHRTDKKAKAK 480


>gi|270012072|gb|EFA08520.1| hypothetical protein TcasGA2_TC006173 [Tribolium castaneum]
          Length = 702

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 140/410 (34%), Positives = 222/410 (54%), Gaps = 3/410 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA      K++ A++ A Y  PTPIQ + +P  LQ  DV GIAQTG+GKTA+F+ P+  
Sbjct: 232 SFAHFNFDDKLLKAIIKAEYTSPTPIQAQAVPCALQGRDVLGIAQTGSGKTAAFLWPLLK 291

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P  LIL PTRELA Q+ +  +K+ + Y+LTV    GG     Q+  L
Sbjct: 292 HVSTQPPVTAGEGPAALILAPTRELAIQIYNEAKKFARVYDLTVVCAYGGGSKWEQSLAL 351

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GAD+++ TPGRI+DH   G   +  +  LV+DEADRM ++GF P ++++ + V   RQ
Sbjct: 352 KEGADIVVATPGRIIDHVKGGATNLQRVTFLVLDEADRMFELGFEPQVRSVCNHVRPDRQ 411

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    ++K++++ L +P RI         E +    +    Q  K+  L+  L+
Sbjct: 412 TLLFSATFRKRIEKLAKDALNDPVRISQGITGQANEDVTQRVLLMENQQLKRDWLVNNLV 471

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +      + ++F  +K +   L + L+ + F    +HG+I+Q  R K+++ FK+    L+
Sbjct: 472 ELLSAG-SVLVFVTKKVDAEQLANDLKVKEFECLLLHGDIEQAERNKVITAFKKKECSLL 530

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+D+    + + HRIGRTGRAG  G A+TL+  +D + +  
Sbjct: 531 VATDVAARGLDIPHIRTVVNYDIARDIDTHTHRIGRTGRAGNQGTAYTLITPKDKEFVGH 590

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           I K +E     +  ++  L          ++     N  +     GF  +
Sbjct: 591 IVKNLEAAHQDVPQEVLDLALQSSWYRKQRYKSKGGNPNVGGVGLGFKEK 640


>gi|121599633|ref|YP_993994.1| putative ATP-dependent RNA helicase rhlE [Burkholderia mallei
           SAVP1]
 gi|121228443|gb|ABM50961.1| putative ATP-dependent RNA helicase rhlE [Burkholderia mallei
           SAVP1]
          Length = 473

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 156/387 (40%), Positives = 226/387 (58%), Gaps = 9/387 (2%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM----LTILEKGRA 68
           + AV + GY +PTPIQ + IP VL   D+   AQTGTGKTA F LP+         + R+
Sbjct: 1   MRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENRS 60

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
             R  R LIL PTRELAAQV ++   Y K   L   ++ GG+    Q   L+RG D+++ 
Sbjct: 61  ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 120

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR+LDH  +  + +++++ILV+DEADRMLDMGFI  I+ + + +P  RQ LLFSAT +
Sbjct: 121 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 180

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
           DE++ ++++ L +P  IEV   ++TAETI            ++          +      
Sbjct: 181 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHL---IREHNWFQV 237

Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           ++F   K     L   L K G S  AIHGN  Q +R + LS FK  T+Q++VA+D+AARG
Sbjct: 238 LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARG 297

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           +DI  + HV NFD+PN  E+Y+HRIGRTGRAG +G+A +LV  ++ + +  IE+LI++++
Sbjct: 298 IDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREI 357

Query: 369 --DWLNGDLSSLNPPLEKIDIAQHNHA 393
               + G     N   E I       A
Sbjct: 358 PQQVIPGFEPDPNAKPEPIQRRGQRGA 384


>gi|325105194|ref|YP_004274848.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324974042|gb|ADY53026.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 608

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 132/370 (35%), Positives = 220/370 (59%), Gaps = 9/370 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLP 58
           M+ F +LG+   +V A+ + G+  PTPIQ   IP++L   +D  G+AQTGTGKTA+F LP
Sbjct: 1   MNPFNELGIRHDIVNAITELGFTNPTPIQESAIPVLLSGSNDFVGLAQTGTGKTAAFGLP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNK 117
           +L +++        P+ LIL PTREL  Q++++ + + KN      + + G      Q +
Sbjct: 61  LLELIDNT---KNHPQALILCPTRELCLQISNDLKNFSKNLKNVNVVAVYGGANIVNQLR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +++RG  +++ TPGR+LD  NR  +  +N+  +V+DEAD ML+MGF   I +I S  P T
Sbjct: 118 EIKRGVQIVVATPGRMLDIINRKAIDFSNVNYVVLDEADEMLNMGFQDDINDILSTTPDT 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           ++T LFSATM  E+++++EN++ NP  +   T         +     Y   ++      +
Sbjct: 178 KKTWLFSATMPKEVRRIAENYMTNPHEL---TVGKQNSGNANIEHEYYIVKARDKYAAFK 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +    GI+FC  K     +  SL K G++  ++HG++ Q+ R K++  ++E ++Q
Sbjct: 235 RIVDFNPDIFGIVFCRTKIETQEIAESLVKDGYNADSLHGDLSQQQRDKVMKRYREKSLQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L++A+D+AARG+D+ +V HV N+ +P+  ENY HR GRT RAG+ G +  ++   +I  I
Sbjct: 295 LLIATDVAARGIDVNNVTHVINYSLPDEIENYTHRSGRTARAGKTGVSIAIINSREIHKI 354

Query: 358 DAIEKLIEKK 367
             IEK+I K+
Sbjct: 355 RQIEKVIGKQ 364


>gi|170727862|ref|YP_001761888.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169813209|gb|ACA87793.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 413

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 157/427 (36%), Positives = 231/427 (54%), Gaps = 21/427 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F+ + LS +++  + +  Y +PT +Q + IP +L   D+   AQTGTGKTA+F LP+ 
Sbjct: 1   MSFSSMALSAELLNVLSELNYSEPTQVQAEAIPAILAGSDLMAGAQTGTGKTAAFALPIL 60

Query: 60  ----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                    +    +   R LIL PTRELA QV  +F +YG    L  A++ GG+  +AQ
Sbjct: 61  ERLSQLKSSQTSYELTPVRALILTPTRELALQVHQSFVRYGDGLTLKSAIVYGGVSIDAQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G D+LI TPGR+LDH  RG L +  +  LV DEADRMLDMGF   I  I   +P
Sbjct: 121 ADILKAGVDILIATPGRLLDHLRRGSLTLTQLAFLVFDEADRMLDMGFKDEIDAILKQLP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT  D +  +S+  L++PK IEV   ++ A  +E    A  A    +    
Sbjct: 181 KERQTLLFSATFDDGVFNLSKRLLKDPKLIEVGKRNAAAGKVEQRVYAVDADRKSELLCH 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                     +  +IF  +K+    L   L  +G    A HG++ Q  R K+L  FK G 
Sbjct: 241 L---ILSKKWRQVLIFSRKKQGADKLAAKLVNEGVKALAFHGDLSQSVREKVLQEFKSGE 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q++VA+D+AARGLD+  +  V N+++P  AE+Y+HRIGRTGRAG  G A TL  ++D  
Sbjct: 298 LQVLVATDVAARGLDVESLEVVVNYELPFVAEDYVHRIGRTGRAGNSGLAITLYCEDDAL 357

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            ++ +E +++ ++   WL G    L   +        +  RKN+   QK      R++  
Sbjct: 358 LLEEVEAVLDTRLPQQWLEGFEPDLTKSV--------SVTRKNSKSAQKQRA---RRRAT 406

Query: 414 SSQKSHI 420
            S++S  
Sbjct: 407 GSKRSRR 413


>gi|89093208|ref|ZP_01166158.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
 gi|89082504|gb|EAR61726.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
          Length = 497

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 133/443 (30%), Positives = 223/443 (50%), Gaps = 6/443 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F D  L   V+ A+ D  +   T IQ +TIP  L   D+ G AQTGTGKTA+F+L + 
Sbjct: 54  MRFHDFNLPDDVLHAISDLKFEYCTGIQAETIPAALAGKDIIGKAQTGTGKTAAFLLGII 113

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
              +    + + R+  PR L++ PTRELA Q+A++ +   K  +L V  L+GG+ +E Q 
Sbjct: 114 TDLIDYPLEEKPRLGEPRALVVAPTRELALQIAEDAKGLAKYTDLHVVSLVGGMDYEKQR 173

Query: 117 KK-LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           +K  ++  D+L+ TPGR++D  NR  + + N+E+LV+DEADRML MGFIP ++ I    P
Sbjct: 174 QKLKKKPVDILVATPGRLIDFVNRKDVDLWNVEVLVLDEADRMLSMGFIPDVRTIVRNTP 233

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                             +     Q          +   +T ++     Y    ++   L
Sbjct: 234 RKGADRQTLLYSATFTDDILNLAEQWTLDAVKIEIAPEIKTTDNVTQTVYLVSGEEKYRL 293

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +    +D  +  I+F N++     L   L K G     + G I Q+ R++ L +F+ G 
Sbjct: 294 LRNYMDKDHAEKVIVFGNRRDETRRLADRLCKDGIRAALMSGEIPQQKRVRTLEDFRSGK 353

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           IQ++VA+D+A RG+ I  V HVFN+ +P   ++Y+HRIGRTGRAG  G +     ++D  
Sbjct: 354 IQVLVATDVAGRGIHIDGVTHVFNYQLPEDPDDYVHRIGRTGRAGATGASICFACEDDSF 413

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI-AQHNHARKNNPIPQKSTGFDRRKKNYS 414
            I  IE     K++ ++ +   L  P  K++   +   +  + P  +     ++++    
Sbjct: 414 LIPEIEAETGVKLECVHPEAELLLEPKAKVNTDEKPEESAPDVPKSEVLEEANQQEPKAV 473

Query: 415 SQKSHIPLKESEKISKLQQDIQE 437
            + S   + +  ++S   +D+  
Sbjct: 474 EEPSEANVTDKTEMSGDSEDVSR 496


>gi|304390841|ref|ZP_07372793.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315656383|ref|ZP_07909272.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|304325724|gb|EFL92970.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315492942|gb|EFU82544.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 525

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 150/497 (30%), Positives = 238/497 (47%), Gaps = 54/497 (10%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  + P++V A+ D G + P PIQ  T+P+ L R D+ G A+TGTGKT  F +P+L 
Sbjct: 27  TFADFDVEPEIVAALRDQGIIHPFPIQALTLPVALNRQDIIGQAKTGTGKTLGFAIPILH 86

Query: 62  IL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L++ PTRELA QVA        +    +  + GG+ F++
Sbjct: 87  DIIGPGDEGWDEIPDSGFPQALVILPTRELAKQVAAEIRAAATHRVARIIEIYGGVGFDS 146

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L +G +V++ TPGR++D  N+G L +  I  LV+DEAD MLDMGF+P ++ + S +
Sbjct: 147 QVEALRKGVEVVVGTPGRLIDLMNQGTLKLGRIRTLVMDEADEMLDMGFLPDVEKLISQI 206

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  R T+LFSATM   +  ++  ++  P  I    P+ +++T+       Y  +S     
Sbjct: 207 PPRRHTMLFSATMPGPVVALARRYMYQPTHIRATDPTDSSQTVRQVKQVVYRVHSLNKTE 266

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +         IIF   K+    L   L ++GF+  AIHG++ Q +R + L  F+ G
Sbjct: 267 VIARILQARNRGLTIIFTRTKRTCQRLSDELAERGFATGAIHGDLGQNARERALRAFRHG 326

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N++ P   + YIHRIGRT RAG  G A T +  ED+
Sbjct: 327 KVDVLVATDVAARGIDVDDVTHVINYECPEDDKTYIHRIGRTARAGNKGSAITFIDWEDL 386

Query: 355 KHIDAIEKLIEKKVDWLNGDL---------SSLNPP-------------------LEKID 386
                I + ++  +D+ +            S L+ P                    E  D
Sbjct: 387 TRWRVINRTLD--LDFADPQETYHTSPHLYSDLDIPTDATANLPRFRRVRAGLEAEELED 444

Query: 387 IAQHNHARKNNPIPQKSTGFDRRK-----------------KNYSSQKSHIPLKESEKIS 429
           +   + AR       K +G  RRK                 K           +E  K  
Sbjct: 445 LGGRDPARPGKRRAGKGSGAGRRKSEKGRGPRKNTKKKHDCKEREKTTKRGAAEEPAKKE 504

Query: 430 KLQQDIQENDADSLGFR 446
           + ++  + + +D  G  
Sbjct: 505 RQRKRTRRHKSDKTGKG 521


>gi|168010159|ref|XP_001757772.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691048|gb|EDQ77412.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 753

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 138/461 (29%), Positives = 220/461 (47%), Gaps = 10/461 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS  ++ A    GY +PTPIQ   IPL L   D+CG A TG+GKT +F LPML  
Sbjct: 130 FGELNLSRPLIRACETLGYREPTPIQAACIPLALTGRDICGSAVTGSGKTGAFALPMLER 189

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     R+   R LIL PTRELA QV    +K  +  ++T A+++GG+  + Q   L   
Sbjct: 190 LLYRPRRIPAIRCLILTPTRELAVQVHSMVQKLAQFTDVTSAIVVGGLSSKVQEVALRAR 249

Query: 123 ADVLICTP-GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D+++ TP   +    N   + + ++ ILV+DEADR+L++GF   +  +    P  RQT+
Sbjct: 250 PDIVVATPGRMLDHLQNSLSVGLEDLSILVLDEADRLLELGFTQEVHELVRQCPKRRQTM 309

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT+E+  +    L +P R+  +  +    ++    V            +   L +
Sbjct: 310 LFSATMTEEVSNLINLSLNSPVRLSADPSTKRPVSLSEEVVKIRPALENDKEAVLLALCT 369

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  IIF   K     L       G     +HGN+ Q  R+  L +F++  +  ++A
Sbjct: 370 RTFKEKVIIFSGMKVEAHRLKILFGLAGLKAAELHGNLTQAMRLDALESFRKQEVDFLIA 429

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V  V NF  P+    Y+HR+GRT RAGR G A T V + +   + AI 
Sbjct: 430 TDVAARGLDIVGVETVINFHCPSDITVYVHRVGRTARAGRKGCAVTFVTERERSLLKAIA 489

Query: 362 KLIEKKV---DWLNGDLSSLNPPLEKID--IAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           K    ++         + +    +E+++  + +   A +     +K+     + +N    
Sbjct: 490 KKAGSQLQNRQVAPTSIYNWRSKIEEMEDGVREVMQAERYEKALRKAEMEVNKAQNMMDH 549

Query: 417 KSHIPLKESEK----ISKLQQDIQENDADSLGFRGNMPAFM 453
           +  I  +   +      + +  I    A   G     PA M
Sbjct: 550 EKEIFSRPKREWFLSTKEKKTTIAAAKARKEGKGEKAPAAM 590


>gi|168186565|ref|ZP_02621200.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
           Eklund]
 gi|169295454|gb|EDS77587.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
           Eklund]
          Length = 371

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 135/373 (36%), Positives = 212/373 (56%), Gaps = 6/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF +LG+S  ++  +   G   PTPIQ  +I  + +  DV   AQTGTGKT +F+LP+  
Sbjct: 3   DFKNLGISKNIIDVLSREGIKSPTPIQENSIEFIRKGKDVIAEAQTGTGKTLAFLLPIFE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +          + LI+ PTRELA Q+ +   K  K  ++ +    GG   ++Q KKL+ 
Sbjct: 63  NISL---ESNFVQVLIVTPTRELAIQITEEAMKLKKAKDINILAAYGGKDIQSQLKKLKG 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH NR  + ++ ++ LV+DEAD+ML MGF   ++ I +      QTL
Sbjct: 120 NIQLIIATPGRLLDHLNRSTIKLDKLKTLVLDEADQMLYMGFKNEVEKIINYTSKKYQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  E++K++  ++++PK + V T   T + I            ++       +  
Sbjct: 180 CFSATMNSEVKKLAYRYMKDPKVVSVKTEEITLKNI---KQFVVETTDRRKQDSLCKVLD 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D     IIFC  K+ V NL  +L K+G++   +HG++ Q  R +++  FK    Q ++A
Sbjct: 237 EDNPFMAIIFCRTKRRVDNLEEALHKRGYNCSKLHGDLAQSKRERVMKKFKNMDTQYLIA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+++D+P  AE+YIHRIGRTGRAG  GK    +  +D + ++ IE
Sbjct: 297 TDVAARGLDITGVTHVYSYDIPENAESYIHRIGRTGRAGEEGKTCLFIDPKDKRLLETIE 356

Query: 362 KLIEKKVDWLNGD 374
           K I+  +   N +
Sbjct: 357 KEIKFTIPRRNVE 369


>gi|163741384|ref|ZP_02148775.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           2.10]
 gi|161385118|gb|EDQ09496.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           2.10]
          Length = 458

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 145/381 (38%), Positives = 232/381 (60%), Gaps = 5/381 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ +GL  +++  + + GY  PTPIQ + IP  L   DV G+AQTGTGKTA+F +P++ 
Sbjct: 19  EFSTMGLPEQLLTRIAELGYTDPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLIA 78

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            + +   +   +  R L+L PTRELA Q+A N +   +   +   L++GG+    Q  +L
Sbjct: 79  QMMQYGRKPAAKTVRGLVLAPTRELANQIAANLKGLTEGTPIKTGLVVGGVSINPQISRL 138

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+LI TPGR+LD  +RG L + + + LV+DEAD+MLD+GFI  ++ I +L+P  RQ
Sbjct: 139 SRGTDILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEQRQ 198

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  ++ +++ ++LQ+P RIEVN      +  +    + +     +   L + L
Sbjct: 199 TMLFSATMPKQMNEIANSYLQSPVRIEVNP---PGKAADKITQSVHFIAKAEKLSLLKEL 255

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  ++F   K  +  L  +L   GFS  AIHGN  Q  R + L++FK G ++++
Sbjct: 256 LGAHKDERTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALASFKSGEVKIL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIPDV +V+N+++PN  + Y+HRIGRT RAG+ G+A    A +++  + A
Sbjct: 316 VATDVAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEMGELKA 375

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           I+K +   +   +G    + P
Sbjct: 376 IQKTMNLNIPVASGRPWEVLP 396


>gi|295133956|ref|YP_003584632.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Zunongwangia
           profunda SM-A87]
 gi|294981971|gb|ADF52436.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Zunongwangia
           profunda SM-A87]
          Length = 598

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 131/375 (34%), Positives = 216/375 (57%), Gaps = 9/375 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLP 58
           M+ F +LGL+  ++ A+ D G+  P+ +Q KTIP++L    D+  +AQTGTGKTA+F  P
Sbjct: 1   MNKFQELGLNSSILKAIEDMGFESPSEVQEKTIPILLDEETDMVALAQTGTGKTAAFGFP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNK 117
           ++  ++    + +  + LIL PTREL  Q+ +  + Y K         + GG     Q K
Sbjct: 61  LIQKIDP---KSKHTQALILSPTRELCLQITNELKNYSKYEPSLHPVAVYGGASITDQAK 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           ++ERGA +++ TPGR+ D   R    ++ IE  V+DEAD ML+MGF   I  I S  P  
Sbjct: 118 QIERGAQIIVATPGRMQDMIRRKLTDISKIEYCVLDEADEMLNMGFYEDITAILSHTPKE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           + T LFSATM  E+  +++ F++NP  + V + +  A  + H     Y   ++      +
Sbjct: 178 KNTWLFSATMPKEVATIAKKFMRNPVEVTVGSKNMGATNVSH---EFYLVNARDRYAALK 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   +     +IFC  K++   +   L + G+S  A+HG++ Q  R  ++ +F+   IQ
Sbjct: 235 RLADANPDIFSVIFCRTKRDTQKVAERLIEDGYSAAALHGDLSQNQRDLVMKSFRTRQIQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ D+ HV N+ +P+  E Y HR GRTGRAG+ G +  +V+K +++ I
Sbjct: 295 MLVATDVAARGIDVDDITHVINYQLPDEVETYTHRSGRTGRAGKLGTSMVIVSKSELRKI 354

Query: 358 DAIEKLIEKKVDWLN 372
            +IE++I++  D   
Sbjct: 355 KSIERIIKQSFDEKQ 369


>gi|309973610|gb|ADO96811.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae R2846]
          Length = 418

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 195/379 (51%), Gaps = 4/379 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L P V   +   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 14  FSDLSLHPIVRDTLAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 73

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 74  LLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAI 133

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P  + 
Sbjct: 134 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPTPQV 193

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L    + T   +     F       E        +T        +   ++    L   L
Sbjct: 194 RLTMLFSATLSYKVRELAFEDMND-PEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTL 252

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G + ++
Sbjct: 253 MEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDIL 312

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ A
Sbjct: 313 VATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPA 372

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+ I   +     +  +L
Sbjct: 373 IEEYIGHSIPVSQYETEAL 391


>gi|260770944|ref|ZP_05879873.1| ATP-dependent RNA helicase DbpA [Vibrio furnissii CIP 102972]
 gi|260614181|gb|EEX39371.1| ATP-dependent RNA helicase DbpA [Vibrio furnissii CIP 102972]
          Length = 460

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 140/402 (34%), Positives = 227/402 (56%), Gaps = 9/402 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L L P+++  +   G+   TPIQ +++P +L   DV G  +TG+GKTA+F L +L 
Sbjct: 5   SFAALNLKPELLSNLDTMGFTHMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+   +L+L PTRELA QVA +    G+  +    L +  G+P   Q   LE
Sbjct: 65  NLHVKRFRVQ---SLVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH ++G++ ++ +  LV+DEADRML+MGF   +  I +  P  RQT
Sbjct: 122 HGAHILVGTPGRILDHLSKGRIDLSELNTLVLDEADRMLEMGFQEALDAIIAEAPKQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +Q+++++  ++   I+V +   T ET          + ++        L 
Sbjct: 182 LLFSATYPEAIQEIAQSVTRDALMIKVAS---THETSSIRQQFYKVEGTEARDEALATLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++FCN K+ V ++   L  +GFSV  +HG+++QR R + L  F   +I ++V
Sbjct: 239 LNHQPESAVVFCNTKREVQSVADELHHKGFSVIELHGDMEQRERDQALVQFANKSISVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G A +  + +++  I  I
Sbjct: 299 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSQGLAISFFSDKEMYRIAQI 358

Query: 361 EKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           E+ ++  +    L   +  + P    +   Q +  +K    P
Sbjct: 359 EEYMDMVISPAELPEPVKGVAPYRSNMVTIQIDGGKKQKVRP 400


>gi|156549811|ref|XP_001606554.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 456

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 121/434 (27%), Positives = 202/434 (46%), Gaps = 12/434 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DL +S  ++  +   G  KPTPIQ   IP +L   D  G A+TG+GKT +F LP+L 
Sbjct: 3   EFTDLNISSWIIDQLKLIGVKKPTPIQQNCIPAILSGKDCIGCAKTGSGKTLAFALPILQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L            L+L PTRELA Q+ D F   GK  NL    ++GG+    Q ++L R
Sbjct: 63  KL---SEDPYGIFALVLTPTRELAFQIGDQFAAIGKTINLKKCTIVGGMDMVVQGQELAR 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+ DH              ++ +    L  G      ++        +  
Sbjct: 120 HPHIVVATPGRLADHLESCNTFSLARIKFLVLDEADRLLGGHFDEQLSVIFKALPKNRQS 179

Query: 182 LFSATMT----DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           L  +       D++++VS       +  + +  ++  E  +   +            + +
Sbjct: 180 LLFSATITDALDKVKQVSTKEWFIWESTDDSGVATVKELDQRYVLCPKDVRDAFLVEVIR 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             ++ +   + +IF +  KN   L  +L + GF   A+H  I Q+ R+  LS FK    +
Sbjct: 240 TFRADNENGSIMIFTDTCKNCQLLSMTLNEVGFDNVALHAMIKQKERLSALSKFKSNHTK 299

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARGLDIP V  V N ++PN  + YIHR+GRT RAGR G A +LV   DI  +
Sbjct: 300 ILIATDVAARGLDIPIVALVINHNIPNIPKEYIHRVGRTARAGRGGMAVSLVTPYDINLL 359

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            AIE+ I  K+     +   +     +I +      ++   I    T F  +K     +K
Sbjct: 360 HAIEETIGTKLTEFKVEDKEIVNIFTQISV-----TKREAEIKLDETDFYEKKMINKRKK 414

Query: 418 SHIPLKESEKISKL 431
             +  K+ +++ ++
Sbjct: 415 LILEGKDPDEVDEI 428


>gi|229845944|ref|ZP_04466056.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 7P49H1]
 gi|229810948|gb|EEP46665.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 7P49H1]
          Length = 415

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 195/379 (51%), Gaps = 4/379 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L P V   +   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDLSLHPIVRDTLAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 71  LLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P  + 
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPTPQV 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L    + T   +     F       E        +T        +   ++    L   L
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMND-PEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTL 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G + ++
Sbjct: 250 MEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDIL 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ A
Sbjct: 310 VATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPA 369

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+ I   +     +  +L
Sbjct: 370 IEEYIGHSIPVSQYETEAL 388


>gi|296824198|ref|XP_002850600.1| ATP-dependent rRNA helicase RRP3 [Arthroderma otae CBS 113480]
 gi|238838154|gb|EEQ27816.1| ATP-dependent rRNA helicase RRP3 [Arthroderma otae CBS 113480]
          Length = 474

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 135/430 (31%), Positives = 231/430 (53%), Gaps = 9/430 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +  A     Y  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 50  SFKDLGIIDSLCDACTSLRYKAPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQ 109

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    L+L PTRELA Q+++ FE  G   ++  A+++GG+   +Q+  L +
Sbjct: 110 AL---MEKPQPYFGLVLAPTRELAVQISEAFEALGSLISVRCAVIVGGMDMISQSISLGK 166

Query: 122 GADVLICTPGRI-LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+     N     + N++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 167 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRT 226

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT++ +++ +    L NP R+ +++     +T+     +      K   +    + 
Sbjct: 227 YLFSATLSSKVESLQRASLSNPLRVSISSNKY--QTVSTLLQSYIFIPHKYKDVYLVHIL 284

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ IIF         L   L   GF    +HG + Q +R+  L  F+ G+  ++V
Sbjct: 285 NEFPGQSTIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRNILV 344

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V NFD+P+ ++ YIHR+GRT RAGR G+A ++V + +++    I
Sbjct: 345 ATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGRSGRAISIVTQYEVEIWQRI 404

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD---RRKKNYSSQK 417
           E  + K++     +   +    +++  AQ     +   + +K        R ++   S++
Sbjct: 405 EVALGKQLPEHKTEKEEVMVLSDRVGDAQRMAVTEMKDLHEKRGTKGATLRGRRKGDSKR 464

Query: 418 SHIPLKESEK 427
           S   +   EK
Sbjct: 465 SRDDMDREEK 474


>gi|87302313|ref|ZP_01085138.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701]
 gi|87283238|gb|EAQ75194.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701]
          Length = 645

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 133/371 (35%), Positives = 208/371 (56%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  GL  +++ AV D GY  P+PIQ   IP ++   D+ G AQTGTGKTA+F LP+L  
Sbjct: 87  FAGFGLGAEILAAVADCGYSDPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLAR 146

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+  +   R P+ L+L PTRELA QVA+ F  Y         L I  G  F  Q  +L+R
Sbjct: 147 LDPQQ---RTPQVLVLTPTRELALQVAEAFNGYAAKLPQVRVLPIYGGADFRDQIVRLKR 203

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR++DH  +G L ++ +  LV+DEAD ML MGFI  ++ +   +P  RQ +
Sbjct: 204 GVQIVVGTPGRVMDHMRQGTLDLSGLRCLVLDEADEMLRMGFIDDVEWVLEQLPQQRQVV 263

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++++S  +LQNP  +   T                  +  +       +  
Sbjct: 264 LFSATMPSEIRRLSRKYLQNPAEV---TIQQKGAENSTIRQRHLVVHGAQKLEALTRVLE 320

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            ++ +  IIF   K   + +  +LE+QG+ V  ++G++ Q  R + +   + G + ++VA
Sbjct: 321 AESSEGVIIFARTKAITLTVSEALEQQGYDVAVLNGDVPQNQRERTVERLRSGQVNVLVA 380

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D+P  +E Y+HRIGRTGRAGR G A   +   + + +  +E
Sbjct: 381 TDVAARGLDVDRITLVINYDIPFDSEAYVHRIGRTGRAGRQGDAILFLTPRERRFLGGLE 440

Query: 362 KLIEKKVDWLN 372
           + + K +  + 
Sbjct: 441 RAVGKAITPME 451


>gi|312130721|ref|YP_003998061.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311907267|gb|ADQ17708.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 400

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 140/372 (37%), Positives = 205/372 (55%), Gaps = 9/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L P V   +    Y   TPIQ   IPLVL++ D+   AQTGTGKTA+F++P+L
Sbjct: 1   MKFEELNLHPDVKNGIEAMNYQDTTPIQEMAIPLVLEKKDLLACAQTGTGKTAAFLIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI---GGIPFEAQNK 117
           +++ +         TLIL PTRELA Q+ +  E  G    +T   +     G  +  Q  
Sbjct: 61  SLIREEGGD--QLSTLILVPTRELAKQIDEQVEGLGYFVGVTSLAIYGGGKGENWGQQRT 118

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GAD++I TPGR+L H   GK+  + I+ LV+DEAD+MLDMGF   I  I   +P  
Sbjct: 119 ALIEGADIIIATPGRLLAHMQSGKIKFDTIKRLVLDEADKMLDMGFSDDINFIIKHLPKE 178

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL+FSATM  +++  + N L+NPK I ++      +         Y    ++   L  
Sbjct: 179 RQTLMFSATMPPKIRTFARNILKNPKEISLSVSKPAEKI----DQRFYMAADEQKLALLN 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L S    +  IIF +Q+  +  +   L +       +  +I+Q  R   L +FK G   
Sbjct: 235 HLLSPFEGQKIIIFTSQRSMIHKILKDLSRNKLKAKGVSSDIEQDEREVALRDFKAGKFN 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ +RG+DI ++  V NFDVP  AE+YIHRIGRT RA   G + T + ++D K +
Sbjct: 295 ILVATDVLSRGIDISNLNLVVNFDVPRDAEDYIHRIGRTARADTEGVSITFLTEKDRKAV 354

Query: 358 DAIEKLIEKKVD 369
             IE L+EK+V+
Sbjct: 355 KDIEALLEKEVE 366


>gi|240949168|ref|ZP_04753515.1| ATP-dependent RNA helicase RhlB [Actinobacillus minor NM305]
 gi|240296471|gb|EER47107.1| ATP-dependent RNA helicase RhlB [Actinobacillus minor NM305]
          Length = 404

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 129/396 (32%), Positives = 209/396 (52%), Gaps = 5/396 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   V+ A+   G+   TPIQ KT+P+ L+ +D+ G AQTGTGKT +F++     
Sbjct: 10  FIDFSIHENVLAALESKGFEFCTPIQAKTLPITLKGNDIAGQAQTGTGKTMAFLIATFHH 69

Query: 63  LEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L     +     PR LIL PTRELA Q+A + E   K+ +L +AL  GG  +E Q + +E
Sbjct: 70  LLTNECQSNKNQPRALILAPTRELAVQIASDAELLVKHSDLKLALAYGGDGYEKQVEAIE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P   Q 
Sbjct: 130 KGVDILVGTTGRVIDYVKQGIINLDCIQVIVLDEADRMFDLGFIKDIRYLMRKCPKPEQR 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L    + T   +     +                 T        +   ++    L   L 
Sbjct: 190 LTMLFSATLSPRVRELAYEDMNN-ASYVEIEPLQRTGHRIKEELFYPSNEDKMALLLTLL 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  +IF N K+    +   L   G  V  + G+I Q+ R+ +L +F +G + ++V
Sbjct: 249 EEEWPERCMIFANTKQKCEEIWQYLLADGHRVGLLTGDIAQKKRLALLDSFTKGELDILV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL IP+V HVFN+D+P+  E+Y+HRIGRTGRAG+ G + +   +    ++ AI
Sbjct: 309 ATDVAARGLHIPEVTHVFNYDLPDDREDYVHRIGRTGRAGQSGHSISFACERYAVNLPAI 368

Query: 361 EKLIEKKVDWLNGDLSSL--NPPLEKIDIAQHNHAR 394
           E+ I   +     D  +L   P +++      N  R
Sbjct: 369 EEYIGHSIPVSQYDSQALLALPKVKRAPRFNRNVKR 404


>gi|221056985|ref|XP_002259630.1| snrnp protein [Plasmodium knowlesi strain H]
 gi|193809702|emb|CAQ40404.1| snrnp protein, putative [Plasmodium knowlesi strain H]
          Length = 1001

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 122/422 (28%), Positives = 198/422 (46%), Gaps = 27/422 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  LS  ++ A+  A Y KPTPIQ++ IP+ L+  D+ GIA+TG+GKTA+FVLPML+ 
Sbjct: 578 WEESNLSSDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSY 637

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +++            P  LI+ P+RELA Q+ D   K+    +     ++GG   E Q  
Sbjct: 638 VKQLPPLTYETSQDGPYALIIAPSRELAIQIFDETNKFASYCSCRTVAVVGGRNAEEQAF 697

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT------ 171
           +L +G +++I TPGRI D   +   ++N    +++DEADRM+DMGF   +  I       
Sbjct: 698 ELRKGVEIIIGTPGRIQDCLEKAYTVLNQCNYVILDEADRMMDMGFEDSVHFILDKIPTS 757

Query: 172 --------------SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
                          +     +    +   +  +    E   +   R             
Sbjct: 758 NLKSEDEALALQEEMMAKAGHRLYRLTQMFSATMPPAVERLSRKYLRAPAYISIGDPGAG 817

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
           +          ++     +     +      I+F NQKK    +  S+ K  F   A+HG
Sbjct: 818 KRSIEQKLEFITEGKKKQKLQEVLEVYEPPIIVFVNQKKVADIIAKSISKMKFRAVALHG 877

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
              Q  R + L++FK G   ++VA+D+A RG+D+  V  V NFD+P   E+Y HRIGRTG
Sbjct: 878 GKAQELREQTLNSFKNGDFDILVATDVAGRGIDVQGVKLVINFDMPKDIESYTHRIGRTG 937

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           RAG  G A + V ++D      +++ +    + +  +L+  N P  K+      H  K  
Sbjct: 938 RAGMKGLAISFVTEQDSNLFYDLKQFLISSNNIVPMELA--NNPASKVKPGSVMHTPKKP 995

Query: 398 PI 399
           P+
Sbjct: 996 PV 997


>gi|189239856|ref|XP_974261.2| PREDICTED: similar to CG6418 CG6418-PB [Tribolium castaneum]
          Length = 699

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 140/410 (34%), Positives = 222/410 (54%), Gaps = 3/410 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA      K++ A++ A Y  PTPIQ + +P  LQ  DV GIAQTG+GKTA+F+ P+  
Sbjct: 232 SFAHFNFDDKLLKAIIKAEYTSPTPIQAQAVPCALQGRDVLGIAQTGSGKTAAFLWPLLK 291

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P  LIL PTRELA Q+ +  +K+ + Y+LTV    GG     Q+  L
Sbjct: 292 HVSTQPPVTAGEGPAALILAPTRELAIQIYNEAKKFARVYDLTVVCAYGGGSKWEQSLAL 351

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GAD+++ TPGRI+DH   G   +  +  LV+DEADRM ++GF P ++++ + V   RQ
Sbjct: 352 KEGADIVVATPGRIIDHVKGGATNLQRVTFLVLDEADRMFELGFEPQVRSVCNHVRPDRQ 411

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    ++K++++ L +P RI         E +    +    Q  K+  L+  L+
Sbjct: 412 TLLFSATFRKRIEKLAKDALNDPVRISQGITGQANEDVTQRVLLMENQQLKRDWLVNNLV 471

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +      + ++F  +K +   L + L+ + F    +HG+I+Q  R K+++ FK+    L+
Sbjct: 472 ELLSAG-SVLVFVTKKVDAEQLANDLKVKEFECLLLHGDIEQAERNKVITAFKKKECSLL 530

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+D+    + + HRIGRTGRAG  G A+TL+  +D + +  
Sbjct: 531 VATDVAARGLDIPHIRTVVNYDIARDIDTHTHRIGRTGRAGNQGTAYTLITPKDKEFVGH 590

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           I K +E     +  ++  L          ++     N  +     GF  +
Sbjct: 591 IVKNLEAAHQDVPQEVLDLALQSSWYRKQRYKSKGGNPNVGGVGLGFKEK 640


>gi|320353576|ref|YP_004194915.1| DEAD/DEAH box helicase domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320122078|gb|ADW17624.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 411

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 130/412 (31%), Positives = 207/412 (50%), Gaps = 4/412 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L   +   + +AG+ + TPIQ  T+PL L   DV G  QTGTGKTA+F++ + 
Sbjct: 1   MQFEQLALPEPLGKGIAEAGFTECTPIQELTLPLTLGGKDVAGRGQTGTGKTAAFLITLF 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              L+        PR LIL PTREL  Q+  +    GK+   ++    GG+ +  Q + L
Sbjct: 61  DRLLKNNPPASPNPRALILAPTRELVVQIHQDALLLGKHCGFSIQAAYGGVDYNKQREAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVLI TPGR++D   +    + +IE+LVIDEADRM D+GFI  ++ +   +P   +
Sbjct: 121 RTGVDVLIGTPGRLIDFLKQKIYTLADIEMLVIDEADRMFDLGFIGDLRFLLRRLPAFDK 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
                 + T   + +   +       +V+    +  T +      +   SK+   L   L
Sbjct: 181 RQNLMFSATLNHRVMELAYEFMNMPEKVSVSGDSM-TADKIEEILFHVSSKEKFPLLLGL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++ M+  +IF N K+    L   L         I G++ Q  R++I+ +FK G + ++
Sbjct: 240 LRREGMERTMIFVNTKREGERLQARLMANDHPCRLISGDVAQEKRLRIMRDFKAGKLPML 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGL I  V HV N+D+P   E+Y+HRIGRT RAG  GKA +L  +  +  ++A
Sbjct: 300 IATDVASRGLHIEGVSHVINYDLPEDCEDYVHRIGRTARAGAEGKAISLADETGVLSLEA 359

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           IE+ I   +  +W   +L  ++         ++       P   K+    RR
Sbjct: 360 IEEYIGHPIPTEWAEDELFVIDYKHPPRTARRNTKPVNTTPRGGKARSGRRR 411


>gi|291276231|gb|ADD91316.1| vasa [Seriola quinqueradiata]
          Length = 650

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 129/417 (30%), Positives = 215/417 (51%), Gaps = 13/417 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 215 MTFAEAALCESLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 274

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + ++ P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 275 QQLMADGVAASQFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGH 334

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
           Q +++ RG +VL  T GR+LD   RGK+ ++ +  LV+DEADRMLDMGF P ++      
Sbjct: 335 QIREICRGCNVLCGTLGRLLDVIGRGKVGLHKLRYLVLDEADRMLDMGFEPDMRRLVGSP 394

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++Q+++ +FL+             A +          ++SK
Sbjct: 395 GMPSKEKRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQKFIEVTKFSK 454

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +       +      +  ++F   K+    +   L ++     +IHG+ +QR R + L++
Sbjct: 455 RE--QLLDILKTTGTERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALAD 512

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDIPDV HV NFD+PN  + Y+HRIGRTGR G  G+A +   
Sbjct: 513 FRSGRCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYD 572

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
            + D +   ++  ++ K    +   L         ++ ++   A  ++    + + F
Sbjct: 573 PDNDGQLAGSLVSILSKAQQEVPSWLEECVFSGSGVNPSRRTFASTDSRKGPQGSSF 629


>gi|324502932|gb|ADY41281.1| ATP-dependent RNA helicase cgh-1 [Ascaris suum]
          Length = 435

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 117/396 (29%), Positives = 191/396 (48%), Gaps = 13/396 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  L   ++  + + G+ KP+PIQ  +I + L   D+   A+ GTGKT ++ +P  
Sbjct: 37  IEFEDFCLKRDLLMGIFEKGWEKPSPIQEASIAIALSGQDILARAKNGTGKTGAYCIP-- 94

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +EK  + ++  + LI+ PTRELA Q +    +  K+  L V +  GG        +L 
Sbjct: 95  -CIEKIDSELKKIQALIVVPTRELALQTSQICVELSKHLKLKVMVTTGGTDLRDDIMRLN 153

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   M+    L++DEAD++L   F   +  +   +P  RQ 
Sbjct: 154 GVVHLVVATPGRILDLMDKGVADMSRCSTLILDEADKLLSQDFQGILDRVIKFLPSERQI 213

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L+SAT    +      F+Q   +           T+            K+       L 
Sbjct: 214 MLYSATFPLTVAT----FMQKHMKNPYEINLMEELTLLGVTQFYAYVQEKQKVHCLNTLF 269

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F++G  + +V
Sbjct: 270 RKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSRMAQNHRNRVFHDFRQGNCRNLV 329

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  I
Sbjct: 330 CSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGIAINLITYEDRFTLRRI 389

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
           E  +   +  +     S++P   K+ +A+H    +N
Sbjct: 390 EAELRTHIAPIP---KSVDP---KLYVAEHQLVDEN 419


>gi|2745894|gb|AAB94769.1| putative RNA helicase RCK [Mus musculus]
          Length = 453

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 109/377 (28%), Positives = 195/377 (51%), Gaps = 8/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 72  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 131

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L+    +    + +++ PTRELA QV+    +  K+     V    G         +L+
Sbjct: 132 RLDL---KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGPTNLRDDIMRLD 188

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 189 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 248

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK    F+ +  +           T++           ++       L 
Sbjct: 249 LLYSATFPLSVQK----FMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLF 304

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 305 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFENGLCRNLV 364

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HR+GR+GR G  G A  L+  +D  ++ +I
Sbjct: 365 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRVGRSGRFGHLGLAINLITYDDRFNLKSI 424

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +  ++  
Sbjct: 425 EEQLGTEIKPIPSNIDK 441


>gi|329912990|ref|ZP_08275858.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
 gi|327545464|gb|EGF30669.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
          Length = 410

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 150/372 (40%), Positives = 212/372 (56%), Gaps = 5/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL  ++   +   GY  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFSKLGLIDQLQRNLDTLGYSTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV   F +YG +  L   +  GG+    Q  K
Sbjct: 61  QRLTMEGPQVSSNCVRVLVLVPTRELAEQVHQAFGEYGASLPLRTHVAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD + +  +    ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGLDVLVATPGRLLDLYRQNAVKFEQLQTLVLDEADRMLDLGFSRELDEVFAALPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ +S   L NP RIE++  ++  +TI            K+   L   
Sbjct: 181 QTLLFSATFSDEIRALSTTLLDNPVRIEISPRNTPVKTI---KQWAIPVDKKRKPELFLH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +      ++F   ++ V  L   L  QG    AIHG+  Q +R++ L  FK   +Q+
Sbjct: 238 LLKKHRWGQVLVFVKTRRGVDELVDILLAQGIRADAIHGDKPQPARLRALEGFKSRDVQI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V NFD+P  AE+YIHRIGRTGRAG  G A +L+  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPQVVNFDLPIVAEDYIHRIGRTGRAGASGMAVSLLCADEAPLLA 357

Query: 359 AIEKLIEKKVDW 370
           AIE L  + +  
Sbjct: 358 AIEMLTGQNLQR 369


>gi|264679797|ref|YP_003279706.1| hypothetical protein CtCNB1_3664 [Comamonas testosteroni CNB-2]
 gi|262210312|gb|ACY34410.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 453

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 154/367 (41%), Positives = 216/367 (58%), Gaps = 8/367 (2%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTL-- 76
            GY   TPIQ + IP+VL   DV G AQTGTGKTA+F LP+L  L +       P     
Sbjct: 1   MGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRHENASASPARHPV 60

Query: 77  ---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
              +L PTRELA QVA     Y K+  L   ++ GG+  + Q  +L++G +VL+ TPGR+
Sbjct: 61  RALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKPQTIELKKGVEVLVATPGRL 120

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193
           LDH     +++N +E +V+DEADRMLD+GF+P +Q I S +P +R TLLFSAT + E+++
Sbjct: 121 LDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKSRTTLLFSATFSPEIKR 180

Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
           ++ ++LQ+P  IEV  P+   ET        Y           + +  +  ++   IF N
Sbjct: 181 LAGSYLQDPVTIEVARPN---ETASTVEQRFYKVTDDDKRYAIRSVLKERDIRQAFIFSN 237

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            K     L  +LE+ G    A+HG+  Q  R+K L  FK G + L+V +D+AARGLDI D
Sbjct: 238 SKLGCARLTRALERDGLRAAALHGDKSQDERLKALEAFKAGEVDLLVCTDVAARGLDIKD 297

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
           V  VFN+DVP  AE+Y+HRIGRTGRAG  G A TLV   D +++  IEKL +KK++    
Sbjct: 298 VPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTDHDSRNVADIEKLTKKKIEVEPA 357

Query: 374 DLSSLNP 380
            +    P
Sbjct: 358 PMLDFRP 364


>gi|223041453|ref|ZP_03611656.1| ATP-dependent RNA helicase RhlB [Actinobacillus minor 202]
 gi|223017711|gb|EEF16118.1| ATP-dependent RNA helicase RhlB [Actinobacillus minor 202]
          Length = 404

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 128/396 (32%), Positives = 209/396 (52%), Gaps = 5/396 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   V+ A+   G+   TPIQ KT+P+ L+ +D+ G AQTGTGKT +F++     
Sbjct: 10  FIDFSIHENVLAALESKGFEFCTPIQAKTLPITLKGNDIAGQAQTGTGKTMAFLIATFHH 69

Query: 63  LEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L     +     PR LIL PTRELA Q+A + E   K+ +L +AL  GG  +E Q + +E
Sbjct: 70  LLTNECQSNKNQPRALILAPTRELAVQIASDAELLVKHSDLKLALAYGGDGYEKQVEAIE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ T GR++D+  +G + ++ ++++V+DEADRM D+GFI  I+ +    P   Q 
Sbjct: 130 KGVDILVGTTGRVIDYVKQGIINLDCVQVIVLDEADRMFDLGFIKDIRYLMRKCPKPEQR 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L    + T   +     +                 T        +   ++    L   L 
Sbjct: 190 LTMLFSATLSPRVRELAYEDMNN-ASYVEIEPLQRTGHRIKEELFYPSNEDKMALLLTLL 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  +IF N K+    +   L   G  V  + G+I Q+ R+ +L +F +G + ++V
Sbjct: 249 EEEWPERCMIFANTKQKCEEIWQYLLADGHRVGLLTGDIAQKKRLALLDSFTKGELDILV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL IP+V HVFN+D+P+  E+Y+HRIGRTGRAG+ G + +   +    ++ AI
Sbjct: 309 ATDVAARGLHIPEVTHVFNYDLPDDREDYVHRIGRTGRAGQSGHSISFACERYAVNLPAI 368

Query: 361 EKLIEKKVDWLNGDLSSL--NPPLEKIDIAQHNHAR 394
           E+ I   +     D  +L   P +++      N  R
Sbjct: 369 EEYIGHSIPVSQYDSQALLALPKVKRAPRFNRNVKR 404


>gi|167769539|ref|ZP_02441592.1| hypothetical protein ANACOL_00873 [Anaerotruncus colihominis DSM
           17241]
 gi|167668507|gb|EDS12637.1| hypothetical protein ANACOL_00873 [Anaerotruncus colihominis DSM
           17241]
          Length = 572

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 144/386 (37%), Positives = 218/386 (56%), Gaps = 9/386 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+GLSP++V AV D  Y + T IQ + IPL++Q  DV G + TGTGKTA+F +P + 
Sbjct: 5   KFEDIGLSPELVQAVSDMNYTQATGIQAQAIPLLMQGADVIGRSSTGTGKTAAFGIPAVE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +E G   ++ P+ L+L PTRELA Q+AD   K+ K         + G        +  R
Sbjct: 65  RIESG---LKAPQVLVLSPTRELAMQIADEMRKFAKYKPGVCVAAVYGGAPMDAQIRALR 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            A+++I TPGR++DH  R  L ++++  +V+DEAD ML+MGF+  IQ I +  P TRQT+
Sbjct: 122 AANIVIGTPGRVMDHMRRHTLRLDDLRTVVLDEADEMLNMGFLDDIQTILAETPDTRQTV 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   + K+++ FL +P+ +++ T   T   +E  F             L      
Sbjct: 182 LFSATMPPAILKITDKFLHDPQTVDIRTGQRTIAAVEQFFYRVPQARKMDALNLLL---Q 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  ++FCN K  V +L   L   GF    IHG++ Q  R +++ +F++G  +++VA
Sbjct: 239 YHDPKRAVVFCNTKAMVDSLTEYLSDHGFRALGIHGDMKQAGRTQVMQSFRDGKTRILVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDAI 360
           +D+AARG+D+ ++  VFNFD+P   E+YIHRIGRTGRAGR G + TLV     +  I  +
Sbjct: 299 TDVAARGIDVENIEAVFNFDIPQEFEHYIHRIGRTGRAGRTGMSHTLVCGARQVDTIRQL 358

Query: 361 EKLIEKKVDWLNGDLSS--LNPPLEK 384
            + I   +      +    +    EK
Sbjct: 359 RRFINADIREAPLPIGDEIVRKKREK 384


>gi|223043299|ref|ZP_03613346.1| ATP-dependent rna helicase, dead/deah box family [Staphylococcus
           capitis SK14]
 gi|222443510|gb|EEE49608.1| ATP-dependent rna helicase, dead/deah box family [Staphylococcus
           capitis SK14]
          Length = 447

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 139/449 (30%), Positives = 213/449 (47%), Gaps = 22/449 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ + IP +L+  ++ G +QTGTGKT SF+LP++ +
Sbjct: 6   FEHFNLDESLIKAVQDLNFEKPTEIQNRIIPRILKGTNLIGQSQTGTGKTHSFLLPLIQM 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNKKLER 121
           ++        P+ +++ PTRELA Q+        K        L IGG   E   ++  R
Sbjct: 66  IDVDLQE---PQAIVVAPTRELAQQLFQAASHLCKFKQEVNVKLFIGGTDIEKDKQRCNR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L  +    L++DEAD M+D+G I  +  I + +       
Sbjct: 123 QPQLIIGTPTRINDLAQGGHLHAHLASNLIVDEADLMIDLGLIEDVDYIAARLNDEAHIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+   LQ     +L  P+ +EV+  S   + IE   + T         L       
Sbjct: 183 VFSATIPKSLQPFLNKYLSQPEFVEVDHKSHNKKNIEFYLIPTKGTAKVDKTLNL---ID 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFCN ++N   L  SL K+G  V  IHG +  R R + +   +    Q ++A
Sbjct: 240 ILNPYLCIIFCNSRENANELADSLNKEGIKVGMIHGGLTPRERKQQMKRIRNLDFQYVIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  IE
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 362 K--LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN---NPIPQKSTGFDRR------K 410
                 + VD  NG+L     P++  D  +    + +   N +  K     +R      K
Sbjct: 360 DKGYHFENVDIKNGEL----KPIKAHDTRRTRQRKDDHLTNEVKHKVRSKSKRKVKPGYK 415

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQEND 439
           K +  +   +  +E +  SK Q   +  +
Sbjct: 416 KKFKQEVEKMKRQERKIYSKRQNKQKRKN 444


>gi|148549843|ref|YP_001269945.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida F1]
 gi|148513901|gb|ABQ80761.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 443

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 147/374 (39%), Positives = 218/374 (58%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+FA LGL   ++  +    Y  PTP+Q K IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV +N  +Y +N  L+   + GG+    Q  +
Sbjct: 61  QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+LD F +  +  N ++ LV+DEADRMLD+GF   +Q++ + +P  R
Sbjct: 121 LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D+++ ++   L +P  IEV+  ++TA +++   V    +           
Sbjct: 181 QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATATSVKQWLVPVDKKRKADLFCHLLR 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            Q     K  ++F   +  V  L   L  +G +   IHG+  Q +R + L +FK   +Q+
Sbjct: 241 KQRW---KQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLA 357

Query: 359 AIEKLIEKKVDWLN 372
           AIE L  + +    
Sbjct: 358 AIEVLTRQTLPRHE 371


>gi|315924965|ref|ZP_07921182.1| DEAD/DEAH family ATP-dependent RNA helicase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621864|gb|EFV01828.1| DEAD/DEAH family ATP-dependent RNA helicase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 550

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 139/370 (37%), Positives = 213/370 (57%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L +  +++ AV   G+ + T IQ + IP +L   D+ G +QTGTGKT +F +P +
Sbjct: 6   MKFNTLAVDQRILDAVARMGFAEMTAIQAQAIPRLLAGKDIIGRSQTGTGKTLAFAIPAV 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEK-YGKNYNLTVALLIGGIPFEAQNKKL 119
             ++    R   P+ LIL PTRELA QVA  FEK    +  + +A + GG     Q +  
Sbjct: 66  QKVDPAAKR---PQVLILLPTRELALQVAGEFEKLLTCSEGVAIAAVFGGASMPKQIRAF 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGRI+DH  RG L  + + ++V+DEAD MLDMGF   I+ I   V    Q
Sbjct: 123 KSGAQIVVGTPGRIMDHLRRGTLRFDAMRMVVLDEADEMLDMGFREDIEAILDRVDHPVQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM   + K++E + ++P+ + +   +  A  I       Y+    +       L
Sbjct: 183 TALFSATMPAPITKMAELYQRDPETVAIAPKNMVAAGI---EERYYSIVDGQKFEALTRL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  +IFCN KK V  L ++L+ +G+S   IHG++ Q +R+ +L  F EG + ++
Sbjct: 240 LAVYRPRRALIFCNTKKYVDELTNALQDRGYSADKIHGDMRQEARLAVLRRFAEGRLAIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  VFN+DVP+  E Y+HRIGRTGRAG+ G + TL  + D   +  
Sbjct: 300 VATDVAARGIDVDDVDIVFNYDVPDNEEYYVHRIGRTGRAGKSGLSLTLARRRDQYRLKK 359

Query: 360 IEKLIEKKVD 369
           I +   K ++
Sbjct: 360 ITRYTRKPIE 369


>gi|170093371|ref|XP_001877907.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647766|gb|EDR12010.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 441

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 121/415 (29%), Positives = 203/415 (48%), Gaps = 7/415 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+   ++ A+ +  +  PT IQ   IP  +   D+ GIA TG+GKT +FV+P+L 
Sbjct: 5   TFAELGICAPLLQALEELKHTTPTEIQTGCIPQAIAGRDIIGIAPTGSGKTLAFVIPILH 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP--FEAQNKKL 119
            L             +L PTRELA Q++  FE  G    +   +++GG     +   +  
Sbjct: 65  RLWDNPQGYFA---CVLSPTRELAYQISAQFEALGAAMGVQSVVIVGGDDDRVQQAVRLA 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   ++           +     + +++ LV+DEADR+LD+ F   I  I   +P  R 
Sbjct: 122 QKPHIIVATPGRLHDHLKSTKGFSLRSLKHLVLDEADRLLDLDFQREITEIMQSIPKERC 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT  + K+    L +P R++ +    T  +             K+  L+  + 
Sbjct: 182 TYLFSATMTANVSKLQRASLSDPVRVDASLFRYTTVSTLVQHYLLCPLVEKEVTLVYLIN 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   I+F     +   L   L   GF    +HG + Q  R+   + FK G  +++
Sbjct: 242 SLVQNLI--IVFVRTVADAKRLSIILRSLGFDAVPLHGELTQSQRLGAFTRFKSGKSKIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLD+P+V  V N+D P  +++YIHR+GRT RAGR GK+  +V + D + +  
Sbjct: 300 VATDVASRGLDVPNVDVVINYDTPTHSKDYIHRVGRTARAGRAGKSILMVTQYDAELMLR 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +EK++ +K+D    DL  +    E++  A      + N   +   G  +R+   S
Sbjct: 360 LEKVLNQKLDLYPTDLQEIALLKERVVEAGRLARNQLNEESKARGGGKKRRYKLS 414


>gi|73969095|ref|XP_860442.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 5 [Canis
           familiaris]
          Length = 630

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 186/378 (49%), Gaps = 21/378 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YGK   L    + GG P   Q + LE
Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 214 RGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E++       +                                 +      
Sbjct: 274 LMWSATWPKEVRHFYIMCGEILSECIFAGLVF-------------------RLIQLMEEI 314

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   +++
Sbjct: 315 MAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILI 374

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    +
Sbjct: 375 ATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQAREL 434

Query: 361 EKLIEKKVDWLNGDLSSL 378
            K++E+    +N  L  L
Sbjct: 435 IKVLEEANQAINPKLMQL 452


>gi|71896321|ref|NP_001026097.1| ATP-dependent RNA helicase DDX42 [Gallus gallus]
 gi|82194905|sp|Q5F485|DDX42_CHICK RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|60098437|emb|CAH65049.1| hypothetical protein RCJMB04_2e15 [Gallus gallus]
          Length = 944

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 139/414 (33%), Positives = 229/414 (55%), Gaps = 10/414 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ +   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 254 SFARFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLI 313

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 314 HIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKAL 373

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 374 QEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 433

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +        +  SK   L ++L+
Sbjct: 434 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRRLV 493

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L ++L+++  ++  +HG++DQ  R K++S FK+  I ++
Sbjct: 494 EFTSSG-SVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPIL 552

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612

Query: 360 IEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNNP-IPQKSTGFDRR 409
           + + +E     ++ +L  L   NP   K   ++    +   P I     G+  R
Sbjct: 613 LVRNLEGANQHVSKELLDLAMQNPWFRK---SRFKGGKGKKPNIGGGGLGYRER 663


>gi|116626579|ref|YP_828735.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116229741|gb|ABJ88450.1| DEAD/DEAH box helicase domain protein [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 422

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 133/424 (31%), Positives = 229/424 (54%), Gaps = 5/424 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L LS ++   +    + +PTPIQ   I   L   D+   AQTGTGKT +F+LP + 
Sbjct: 3   NFSELPLSAQLKSNLAKNNFTEPTPIQSLAIEPALAGKDIVATAQTGTGKTLAFLLPTIQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L     R    R LIL PTRELA Q+ +   +  +   +  A+ +GG+   +Q + +  
Sbjct: 63  LLSTEP-RQPGVRALILTPTRELALQINEALLQIARGTGIRAAVAVGGLNERSQLRDIRG 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA++++ TPGR+ D  +RG + +  + +L++DE+DRMLDMGF+P I+ I + +P  RQTL
Sbjct: 122 GANIVVATPGRLYDFMSRGLINLTTVRMLILDESDRMLDMGFLPTIKRIIAAMPAERQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++++ E  ++N  RIE+ + S  +E ++        +  +        +  
Sbjct: 182 LFSATLESSVKQLVETHVRNAVRIELGSISKPSEQVDL----HLYEVDQDRKFGLLEMML 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++   + ++F   K     L   L + GF   AIHG+  Q  R++ L  F+EG  +++VA
Sbjct: 238 REEQGSFLVFARTKHGADKLAKKLAQSGFKSAAIHGDRSQNQRIQALKGFQEGYYRVLVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ +  + HV NFD+P   E++IHR+GRTGRAG  G A T   + +   I  IE
Sbjct: 298 TDVAARGIHVEGISHVVNFDLPQVPEDFIHRVGRTGRAGAKGTASTFATRSERSEIGRIE 357

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           + +  K+       S +  P ++          K     +   G ++  +++S +    P
Sbjct: 358 RTLSVKLKRREVSASIVAAPRKESSAVIVLPHAKRAEHSRPEQGRNKSFRSFSPKSGRRP 417

Query: 422 LKES 425
           ++ +
Sbjct: 418 VRRA 421


>gi|125559280|gb|EAZ04816.1| hypothetical protein OsI_26993 [Oryza sativa Indica Group]
          Length = 501

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 137/430 (31%), Positives = 215/430 (50%), Gaps = 12/430 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGLS  +V      G   PT +Q + IP  L+  DV GIA+TG+GKTA+F LP+L 
Sbjct: 78  TFAELGLSQWLVDVCDSLGMRVPTAVQRRCIPRALEGRDVLGIAETGSGKTAAFALPILH 137

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    V       L PTRELAAQ+A+ F   G    L     IGG     Q K L R
Sbjct: 138 RLGEDPYGVAALA---LAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDSLGQAKGLAR 194

Query: 122 GADVLICTPGRILDHFNRGKL---LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              V++ TPGRI    N       +    + LV+DEADR+LD+ F   ++ I   +P  R
Sbjct: 195 RPHVVVATPGRIATLINDDPDLAKVFARTKFLVLDEADRVLDINFEEDLRVIFGSLPKKR 254

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT LFSAT++D L+ + E    N    E      T +T++  ++       +        
Sbjct: 255 QTFLFSATISDNLRSLLELSGNNSYFFEAYEGFKTVDTLKQLYIHVPPDAKELYLFYLLS 314

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             ++D +++ I+F +  +    L   LE+ G    ++H +  Q  R+  L NFK   + +
Sbjct: 315 KMNEDNIRSVIVFVSTCRTCQYLDFLLEELGHPAVSLHSHKPQSRRLAALHNFKSSKVPV 374

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHI 357
           ++A+D+A+RGLDI  V  V N+DVP    +YIHR+GRT RA R G + + +  + DI+ +
Sbjct: 375 LLATDVASRGLDIQTVDLVINYDVPRYPRDYIHRVGRTARATRGGLSISFITTQRDIRLL 434

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE ++ K++   +G++  +N      D  +   AR+   +     G + + +    QK
Sbjct: 435 HEIEDVVGKQLGAYDGEMRDVNK-----DATKVFKARRLANMKMADEGHEDKVQARKEQK 489

Query: 418 SHIPLKESEK 427
                ++ + 
Sbjct: 490 KRAQERKRKH 499


>gi|115473551|ref|NP_001060374.1| Os07g0633500 [Oryza sativa Japonica Group]
 gi|75329662|sp|Q8L4E9|RH36_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 36
 gi|22093824|dbj|BAC07111.1| DEAD box protein-like [Oryza sativa Japonica Group]
 gi|22296386|dbj|BAC10155.1| DEAD box protein-like [Oryza sativa Japonica Group]
 gi|113611910|dbj|BAF22288.1| Os07g0633500 [Oryza sativa Japonica Group]
 gi|125601204|gb|EAZ40780.1| hypothetical protein OsJ_25257 [Oryza sativa Japonica Group]
          Length = 501

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 137/430 (31%), Positives = 215/430 (50%), Gaps = 12/430 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGLS  +V      G   PT +Q + IP  L+  DV GIA+TG+GKTA+F LP+L 
Sbjct: 78  TFAELGLSQWLVDVCDSLGMRVPTAVQRRCIPRALEGRDVLGIAETGSGKTAAFALPILH 137

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    V       L PTRELAAQ+A+ F   G    L     IGG     Q K L R
Sbjct: 138 RLGEDPYGVAALA---LAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDSLGQAKGLAR 194

Query: 122 GADVLICTPGRILDHFNRGKL---LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              V++ TPGRI    N       +    + LV+DEADR+LD+ F   ++ I   +P  R
Sbjct: 195 RPHVVVATPGRIATLINDDPDLAKVFARTKFLVLDEADRVLDINFEEDLRVIFGSLPKKR 254

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT LFSAT++D L+ + E    N    E      T +T++  ++       +        
Sbjct: 255 QTFLFSATISDNLRSLLELSGNNSYFFEAYEGFKTVDTLKQLYIHVPPDAKELYLFYLLS 314

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             ++D +++ I+F +  +    L   LE+ G    ++H +  Q  R+  L NFK   + +
Sbjct: 315 KMNEDNIRSVIVFVSTCRTCQYLDFLLEELGHPAVSLHSHKPQSRRLAALHNFKSSKVPV 374

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHI 357
           ++A+D+A+RGLDI  V  V N+DVP    +YIHR+GRT RA R G + + +  + DI+ +
Sbjct: 375 LLATDVASRGLDIQTVDLVINYDVPRYPRDYIHRVGRTARATRGGLSISFITTQRDIRLL 434

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE ++ K++   +G++  +N      D  +   AR+   +     G + + +    QK
Sbjct: 435 HEIEDVVGKQLGAYDGEMRDVNK-----DATKVFKARRLANMKMADEGHEDKVQARKEQK 489

Query: 418 SHIPLKESEK 427
                ++ + 
Sbjct: 490 KRAQERKRKH 499


>gi|325280019|ref|YP_004252561.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324311828|gb|ADY32381.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
           20712]
          Length = 594

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 135/418 (32%), Positives = 225/418 (53%), Gaps = 23/418 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LGL  +++  + D G+  P+P+Q K IP++L + +D+  +AQTGTGKTA+F LP+L
Sbjct: 3   KFKELGLEGEILKGIEDLGFEVPSPVQEKVIPVILGEENDLVALAQTGTGKTAAFGLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             L+     +   + LIL PTREL  Q+  + + Y K   ++ VA + GG     Q ++L
Sbjct: 63  QKLDTS---LNAIQVLILSPTRELCMQIGKDLQNYAKYRSDIRVACVYGGADIRKQIREL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  VL+ TPGR+ D   R  + +  +  +V+DEAD ML+MGF   +  I    P  R 
Sbjct: 120 DRGVHVLVATPGRLCDLIKREAVKIEQVRAVVLDEADEMLNMGFKEDLNFILDETPAERN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM  E++++++N+L+NP+ I     +  A+T+ H     Y   ++ C      +
Sbjct: 180 TYLFSATMPREVERIAKNYLRNPQEISTGKKNQGADTVTH---EYYQVLARDCYETLHRV 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIF   K +   +   L+K G    A+HG++ Q  R  ++  F+   ++++
Sbjct: 237 IDCAPDMYAIIFTRTKMDAREIARKLQKDGIDCDALHGDLSQAQRDDVMDRFRAKRLKVL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ ++ HV N+++P   E+Y HR GRTGRAGR G +  ++  ++   +  
Sbjct: 297 VATDVAARGLDVDNLTHVINYNLPEDVESYTHRSGRTGRAGREGISVAIINSKEKGKLRR 356

Query: 360 IEKLIEKKVDWLN---------------GDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           IE +++KK  +                  D   +  P E +D  +H    K   + ++
Sbjct: 357 IENILKKKFQYKEVPGGEEVCRAQLSYYADKILMTEPKETLDKYRHELFEKFEELSKE 414


>gi|313500721|gb|ADR62087.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida BIRD-1]
          Length = 443

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 147/374 (39%), Positives = 218/374 (58%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+FA LGL   ++  +    Y  PTP+Q K IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV +N  +Y +N  L+   + GG+    Q  +
Sbjct: 61  QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+LD F +  +  N ++ LV+DEADRMLD+GF   +Q++ + +P  R
Sbjct: 121 LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D+++ ++   L +P  IEV+  ++TA +++   V    +           
Sbjct: 181 QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRKADLFCHLLR 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            Q     K  ++F   +  V  L   L  +G +   IHG+  Q +R + L +FK   +Q+
Sbjct: 241 KQRW---KQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLA 357

Query: 359 AIEKLIEKKVDWLN 372
           AIE L  + +    
Sbjct: 358 AIEVLTRQTLPRHE 371


>gi|308805024|ref|XP_003079824.1| putative RNA helicase (ISS) [Ostreococcus tauri]
 gi|116058281|emb|CAL53470.1| putative RNA helicase (ISS) [Ostreococcus tauri]
          Length = 425

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 109/375 (29%), Positives = 189/375 (50%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P+L 
Sbjct: 52  EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFSIPILE 111

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++       + + +IL PTRELA Q +   ++ GK+  + V +  GG   +    +L +
Sbjct: 112 KVDTS---KNIIQAVILVPTRELALQTSQVCKELGKHLGVAVMVTTGGTSLKDDIMRLHQ 168

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR++D  ++G   +    +L +DEAD++L   F P I  + + +   RQ L
Sbjct: 169 PVHVVVATPGRLVDLASKGVAKLGQATMLAMDEADKLLSPEFQPVIGQVINFMAKNRQIL 228

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    ++     F     R           T++           ++       L S
Sbjct: 229 LYSATFPVTVKD----FKDKYLRKPYVINLMEELTLKGITQYYAFVEERQKVHCLNTLFS 284

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 285 KLQINQSIIFCNSVTRVELLARKITELGYSCFYIHAKMIQAHRNRVFHDFRNGACRNLVS 344

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G A  L+  +D  ++  IE
Sbjct: 345 SDLFTRGIDIQSVNVVINFDFPKNSETYLHRVGRSGRFGHLGIAVNLITYDDRMNLFRIE 404

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 405 QELGTEIQQIPSQID 419


>gi|71005310|ref|XP_757321.1| hypothetical protein UM01174.1 [Ustilago maydis 521]
 gi|74703958|sp|Q4PFD9|PRP5_USTMA RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|46096725|gb|EAK81958.1| hypothetical protein UM01174.1 [Ustilago maydis 521]
          Length = 1156

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 129/454 (28%), Positives = 223/454 (49%), Gaps = 8/454 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL    +  +   GY  PTPIQ + +P ++   D+ G+A+TG+GKT +F+LPM  
Sbjct: 477 KWSHCGLPASCLDVIKRLGYSAPTPIQSQAMPAIMSGRDIIGVAKTGSGKTMAFLLPMFR 536

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++  R       P  +I+ PTRELA Q+      + K   L  A + GG P   Q  ++
Sbjct: 537 HIKDQRPVEPSEGPVGIIMTPTRELAVQIYREMRPFIKALGLRAACVYGGAPISEQIAEM 596

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++ AD+++ TPGR++D     +     +  +  LV+DEADRM DMGF P +  I + +  
Sbjct: 597 KKTADIVVATPGRLIDLLTANSGRVTNLYRVTYLVLDEADRMFDMGFEPQVMKILNNIRP 656

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA--L 234
            RQT+LFSAT   +++ ++   L+N          S         V   ++ +K      
Sbjct: 657 DRQTVLFSATFPKQMESLARKVLKNKPLEITVGGRSVVAAEIEQIVEVRSEDTKFHRLLE 716

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   L +++     +IF ++++   +L   L ++G+   ++HG  DQ  R + +S+FK G
Sbjct: 717 ILGELYNREKDARTLIFVDRQEAADDLLKDLIRKGYVTMSLHGGKDQVDRDETISDFKAG 776

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++ A+ +AARGLD+  +  V N+DVPN  E+Y+HR GRTGRAG+ G   T +  E  
Sbjct: 777 NVPIVTATSVAARGLDVKQLKLVINYDVPNHMEDYVHRAGRTGRAGQKGTCITFITPEQD 836

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPL-EKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           ++   I   ++     +  +L ++     EK+   +   A               R+K  
Sbjct: 837 RYARDIIAALKASAAHVPPELEAMAASFKEKLAAGKAKAAGSGFGGKGLDRFELDREKTL 896

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
            +QKS     + +  +    D  E+ A +    G
Sbjct: 897 KAQKSAYGEADDDAKAAAAGDSSEDKAKTGAPPG 930


>gi|73954679|ref|XP_860431.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX6
           (DEAD-box protein 6) (ATP-dependent RNA helicase p54)
           (Oncogene RCK) isoform 4 [Canis familiaris]
          Length = 490

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 102/381 (26%), Positives = 182/381 (47%), Gaps = 9/381 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 97  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

Query: 62  I-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                        +     +I+              +         V    GG       
Sbjct: 157 RLDLKKDNIQGYIIGKITMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI 216

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L+    V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P 
Sbjct: 217 MRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK 276

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LL+SAT    +QK    F+ +  +           T++           ++     
Sbjct: 277 NRQILLYSATFPLSVQK----FMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCL 332

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  
Sbjct: 333 NTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLC 392

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +V +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  +
Sbjct: 393 RNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFN 452

Query: 357 IDAIEKLIEKKVDWLNGDLSS 377
           + +IE+ +  ++  +  ++  
Sbjct: 453 LKSIEEQLGTEIKPIPSNIDK 473


>gi|229521507|ref|ZP_04410926.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|229341605|gb|EEO06608.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
          Length = 397

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 150/403 (37%), Positives = 227/403 (56%), Gaps = 7/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V  V   GY KPT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YGK+  L    + GG+  +AQ ++L
Sbjct: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  +++P  I +    ++   I    +                 
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 238 INEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           IE  +   ++     +     P + + I+  N+  K+    Q 
Sbjct: 358 IESRLGHLIER---RVVEGFEPKKPVPISILNYVPKHKRAAQD 397


>gi|146306338|ref|YP_001186803.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145574539|gb|ABP84071.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 441

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 200/370 (54%), Gaps = 5/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA   L  +++ AV +  +V+PTP+Q   IP  L+  D+  IAQTG+GKTA+FVLP+L  
Sbjct: 2   FAQFALHERLLKAVAELNFVEPTPVQAAAIPPALEGKDLRVIAQTGSGKTAAFVLPLLNR 61

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +    +    R LIL PTRELA Q     E++ +   L   L+ GG  F+ Q   + 
Sbjct: 62  LLGDGNSQQRVSIRALILLPTRELAQQTLKEVERFAQFTFLKAGLVTGGEDFKVQA-AMM 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R  D+LI TPGR+++H N G L + ++E+LV DEADRMLDMGF    Q +       +  
Sbjct: 121 RKIDILIGTPGRLIEHANAGNLPLGDVEVLVFDEADRMLDMGFAEDAQRLAEACGPHQTL 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L  + T  + L+++    L+ P+ + +N+ S   E      +     + K    L   L 
Sbjct: 181 LFSATTGGNGLREMVAKVLKEPQHLMLNSVSQLNEGTRQQIITADHNHHK--EQLVDWLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +T    I+F N +     L   L   G     +HG  DQ+ R   +   ++G ++++V
Sbjct: 239 ANETYDKAIVFTNTRVQADRLYGKLVAAGVKAFVLHGEKDQKDRKLAIERLRQGAVKVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + +I
Sbjct: 299 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGGEGLAISLICHTDWNLMSSI 358

Query: 361 EKLIEKKVDW 370
           E+ ++++ + 
Sbjct: 359 ERYLKQRFER 368


>gi|158520071|ref|YP_001527941.1| DEAD/DEAH box helicase domain-containing protein [Desulfococcus
           oleovorans Hxd3]
 gi|158508897|gb|ABW65864.1| DEAD/DEAH box helicase domain protein [Desulfococcus oleovorans
           Hxd3]
          Length = 464

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 129/407 (31%), Positives = 204/407 (50%), Gaps = 12/407 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ L   ++ A+ D G+   TPIQ + +P  L   D  G AQTGTGKTA+F++ +LT 
Sbjct: 56  FHDMDLPDALMHAIYDLGFTYCTPIQAEILPSTLAGRDAFGRAQTGTGKTAAFLISILTH 115

Query: 63  LEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +         +   PR L+L PTREL  Q+ +  ++  ++  + +  + GG+ F+ Q  +
Sbjct: 116 MHNNPITAARKPGTPRALVLAPTRELVIQIGEEAQQLARHLPVNIVSVFGGMDFKQQQDR 175

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 D+++ TPGR+LD   R  +++  +EILVIDEADRMLDMGFIP ++ I    P  
Sbjct: 176 LTREPVDIIVATPGRLLDFSRRRAVMLKQVEILVIDEADRMLDMGFIPDVRKIIYATPQK 235

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
                   + T                ++V              V       +K AL   
Sbjct: 236 GNRQTLLFSATLTEAITRLASAWTRDPVQVAIEPEHVAVDSVDQVVYIVTSDRKLAL-LY 294

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q  +   ++FCN+K  V  L   L + G     + G++ Q+ R + L +FK G I+
Sbjct: 295 NIIVQQNLSRVLVFCNRKDAVSRLADRLTRYGIKCEILTGDVPQQKRSRRLEDFKSGKIR 354

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+ + D+ HV NFD+P+  E+Y+HRIGRTGRAG  G + +   + D  +I
Sbjct: 355 VLVATDVMARGIHVEDMDHVVNFDLPHDPEDYVHRIGRTGRAGAVGTSISFADERDSFYI 414

Query: 358 DAIEKLIEKKVDWLNGDLS--SLNPPLEKIDIAQHNHARKNNPIPQK 402
             IE  +E+ +  +  D +   L PP       +    RK  P   +
Sbjct: 415 PDIEDFMERPLPCIEPDSTWLELPPPAAP----KKERPRKTTPRTGR 457


>gi|262191718|ref|ZP_06049893.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
 gi|262032413|gb|EEY50976.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
          Length = 397

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 149/373 (39%), Positives = 219/373 (58%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V  V   GY KPT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YGK+  L    + GG+  +AQ ++L
Sbjct: 61  EKLRQGQTQRKKRIRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  +++P  I +    ++   I    +                 
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 238 INEQKWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357

Query: 360 IE----KLIEKKV 368
           IE     LIE++V
Sbjct: 358 IESRLGHLIERRV 370


>gi|319648702|ref|ZP_08002913.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2]
 gi|317389121|gb|EFV69937.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2]
          Length = 516

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 138/355 (38%), Positives = 210/355 (59%), Gaps = 6/355 (1%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
            G+ + TPIQ +TIPL L   DV G AQTGTGKTA+F +P++  +          + +++
Sbjct: 1   MGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKINP---ESPNIQAIVI 57

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QV++   K G++    V  + GG     Q + L++   +++ TPGR+LDH N
Sbjct: 58  APTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKKNPHIIVGTPGRLLDHIN 117

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           R  + +  +  +V+DEAD ML+MGFI  I++I S VP   QTLLFSATM   +++++E F
Sbjct: 118 RRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLFSATMPAPIKRIAERF 177

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           + NP+ ++V     T   I+         + +K       L    + +  I+F   K+ V
Sbjct: 178 MTNPEHVKVKAKEMTVSNIQQ---FYLEVHERKKFDTLTRLLDIQSPELAIVFGRTKRRV 234

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             L  +L  +G++   IHG++ Q  RM  L  FK+G I+++VA+D+AARGLDI  V HV+
Sbjct: 235 DELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARGLDISGVTHVY 294

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
           NFDVP   E+Y+HRIGRTGRAG+ G A T +   +   + AIE+  ++K+D +  
Sbjct: 295 NFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTTKRKMDRMKA 349


>gi|153212702|ref|ZP_01948359.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
 gi|124116352|gb|EAY35172.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
          Length = 397

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 151/373 (40%), Positives = 222/373 (59%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V  V   GY KPT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YGK+  L    + GG+  +AQ ++L
Sbjct: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  +++P  I +    ++   I            +  + L   L
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNI---SQWLITVDKETKSALLSHL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 238 INEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357

Query: 360 IE----KLIEKKV 368
           IE     LIE++V
Sbjct: 358 IESRLGHLIERRV 370


>gi|156848475|ref|XP_001647119.1| hypothetical protein Kpol_1036p3 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160385736|sp|A7TEF4|FAL1_VANPO RecName: Full=ATP-dependent RNA helicase FAL1
 gi|156117803|gb|EDO19261.1| hypothetical protein Kpol_1036p3 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 399

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 123/381 (32%), Positives = 206/381 (54%), Gaps = 8/381 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+  P+ IQ + I  ++   DV   AQ+GTGKTA+F + ML 
Sbjct: 24  TFESMNLKDDLLRGIYGYGFEAPSAIQSRAITQIISGTDVIAQAQSGTGKTATFTIGMLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  R  ++    L+L PTRELA+Q+       G   N+    + GG   +    ++++
Sbjct: 84  AIDLKRKDLQA---LVLSPTRELASQINQVVSNLGDYMNVQSYAMTGGKTMKDDLNRMQK 140

Query: 122 G-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR--MLDMGFIPYIQNITSLVPFTR 178
               V+  TPGR+LD F R  L   N+++L++DEAD      +GF   I +I + +P   
Sbjct: 141 NGCQVVSGTPGRVLDMFKRHLLNTRNVQMLILDEADELLGESLGFKQQIYDIFTKLPAAC 200

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++ SATM+ ++ +V++ F+ +P +I V     + E I+  +V    +  K   L    
Sbjct: 201 QVVVVSATMSKDILEVTKKFMSDPVKILVKRDEISLEGIKQYYVNVEKEDWKFDTLCDLY 260

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                T    +IFCN KK V  L   L +  F+V ++HG++ Q  R K++S+F+ G  ++
Sbjct: 261 DSLTITQC--VIFCNTKKKVDWLSAKLTQSNFAVVSMHGDMKQEDRNKVMSDFRSGHSRV 318

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++++D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   +   D+  + 
Sbjct: 319 LISTDVWARGIDVQQVSLVINYDIPEIMENYIHRIGRSGRFGRKGVAINFITSSDLSKMK 378

Query: 359 AIEKLIEKKVDWLNGDLSSLN 379
            IEK    K+  +  DLS+++
Sbjct: 379 EIEKYYRIKISPVPADLSTIS 399


>gi|47227893|emb|CAG09056.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 482

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 101/376 (26%), Positives = 179/376 (47%), Gaps = 6/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+  
Sbjct: 96  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPL-- 153

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +      R  +   +I+              +       + V    GG        +L+ 
Sbjct: 154 LERIDLKRDCIQALVIVPTRELALQVSQICIQVSKHMGGVKVMATTGGTNLRDDIMRLDE 213

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGRILD   +G   ++ ++++V+DEAD++L   F+  ++ I   +   RQ L
Sbjct: 214 TVHVVIATPGRILDLIKKGVAKVSQVQMIVLDEADKLLSQDFVGMMEEILGFLSKQRQIL 273

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    +QK    F+ +  +           T++           ++       L S
Sbjct: 274 LYSATFPLSVQK----FMTSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFS 329

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 330 RLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVC 389

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P   E Y+HRIGR+GR G  G A  L+  +D  ++  IE
Sbjct: 390 TDLFTRGIDIQAVNVVINFDFPKLGETYLHRIGRSGRFGHLGLAINLITYDDRFNLKGIE 449

Query: 362 KLIEKKVDWLNGDLSS 377
           + +  ++  + G +  
Sbjct: 450 EQLGTEIKPIPGIIDK 465


>gi|313682085|ref|YP_004059823.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313154945|gb|ADR33623.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 458

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 143/450 (31%), Positives = 230/450 (51%), Gaps = 9/450 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++  +   GY +PTPIQ + IPLVL+  D+ G AQTGTGKTA+F LP++
Sbjct: 1   MSFTTLGLSAHLLETLSAKGYSEPTPIQAQVIPLVLRGRDILGAAQTGTGKTAAFALPII 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L       +      I+ PTRELA+QVA+    Y +   L    L GG     Q K+L
Sbjct: 61  QKLNASSESGQASARALIIVPTRELASQVAEAIRSYAEGLELNCIALYGGANMARQAKEL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR+++   +G + ++ IE LV DEAD + DMGFI  +  I  L+P  RQ
Sbjct: 121 SEGVDIIVATPGRLIELNKQGHVPLSRIEYLVFDEADTIFDMGFIREVGQIIDLLPLNRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATMT  ++++SE  L+ P  +E++   +   T+         +  K+        
Sbjct: 181 NMLFSATMTGAVKQLSEKILKKPLLVEIDNLKAADMTLRQVVHPVEKERKKELLSFL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     ++F   K     +   L   G     IHG+    +R + LS F+EG+ +++
Sbjct: 238 IGSNNYPQVLVFTRTKTEADEVSAELTASGLKNAVIHGDKKHGARDRALSEFREGSARIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+D+P+ + +Y+HRIGRTGRAG  G A TL++  +      
Sbjct: 298 VATDIAARGLDIEGLDVVINYDIPHVSTDYLHRIGRTGRAGNEGLAITLLSSGEHISWKK 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK--IDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           I  ++ K V+ +   +    PP +   +     + +++     + +  F  ++K    Q 
Sbjct: 358 IITMLGKNVETVL--VPGFEPPADNALVKTRGKSLSKEGEKKGKTAGAFGNKRKKEPVQP 415

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRG 447
             I  K   ++++ +   +        F  
Sbjct: 416 KFI-GKRGPRVARDEPAGKSASGRDSAFGN 444


>gi|167533855|ref|XP_001748606.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772847|gb|EDQ86493.1| predicted protein [Monosiga brevicollis MX1]
          Length = 698

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 134/430 (31%), Positives = 204/430 (47%), Gaps = 33/430 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + GL+P+++ A+   G+  PTPIQ   IP+ L   D+ G+A+TG+GKT +FVLP+L 
Sbjct: 274 SWDEAGLNPEMLKAIQKLGFENPTPIQRAAIPIGLNNRDIIGVAETGSGKTLAFVLPLLN 333

Query: 62  ILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +       + +     P  +IL PTR+LA Q+ D   K+ +   + +  +IGG   E Q
Sbjct: 334 WIISLPQLVREQDIDNGPYAVILAPTRDLAQQIEDEANKFARPLGVRLVSVIGGHSREDQ 393

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           + KL +G +V+I TPGR++D  +   +++N    +V+DEADRMLDMGF P +Q I   +P
Sbjct: 394 SFKLNQGCEVVIATPGRLIDVLDNHYMVLNQCSYIVMDEADRMLDMGFEPEVQRILEYIP 453

Query: 176 FTRQTLLFSATMTDE---------------------LQKVSENFLQNPKRIEVNTPSSTA 214
            +                                  +    E   +   R         A
Sbjct: 454 VSNMKPDTDEAEDQHLLAENSRNKAKYRQTVLFTATMPTSVERLARTYLRRPATVNIGVA 513

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
                         S+K    + +          IIF NQKK    L  SLEK G+   A
Sbjct: 514 GRAADRVEQRVLMLSEKQKRNELVKLLDSMEPPVIIFVNQKKGADVLTKSLEKMGYRASA 573

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG   Q  R + LS  K+ T  ++VA+D+A RG+DI  +  V N+D+    E+Y HRIG
Sbjct: 574 LHGGKSQDLRERALSQLKDKTKDILVATDVAGRGIDIKGISMVINYDMAKNIEDYTHRIG 633

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           RTGRAG  G A T + +ED K    ++++++      +   S     LE+   AQH    
Sbjct: 634 RTGRAGSSGVAVTFLTEEDSKVFWDLKEMLK------SSKNSVCPRELEQHPEAQHKPGT 687

Query: 395 KNNPIPQKST 404
             N   +K T
Sbjct: 688 AVNKFGRKET 697


>gi|60501849|gb|AAX22124.1| DEAD-box RNA-dependent helicase p68 [Carassius auratus]
          Length = 611

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 131/378 (34%), Positives = 201/378 (53%), Gaps = 3/378 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +      V+  +    +  PTPIQ +  P+ L   D+ GIAQTG+GKT S++LP +
Sbjct: 96  VKFHEANFPNYVMDVIGKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAI 155

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV     +YGK   L    + GG P   Q + 
Sbjct: 156 VHINHQPFLERGEGPICLVLAPTRELAQQVQQVAAEYGKASRLKSTCIYGGAPKGPQIRD 215

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 216 LERGVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKILDQIRPDR 275

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQ 237
           QTL++SAT   E+++++E+FL++  +I V     +A       V       K+   +   
Sbjct: 276 QTLMWSATWPKEVRQLAEDFLKDYVQINVGALQLSANHNILQIVDVCNDGEKEDKLMRLL 335

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                +     IIF   K+   +L  S+ + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 336 EEIMSEKENKTIIFVETKRRCDDLTRSMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAP 395

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ D+  V N+D PN +E+YIHRIGRT R+ + G A+T     ++K  
Sbjct: 396 ILIATDVASRGLDVEDIKFVINYDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQA 455

Query: 358 DAIEKLIEKKVDWLNGDL 375
             +  ++ +    +N  L
Sbjct: 456 HDLVSVLREANQAINPKL 473


>gi|104779961|ref|YP_606459.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95108948|emb|CAK13644.1| putative ATP-dependent RNA helicase, DEAD box family (RhlE)
           [Pseudomonas entomophila L48]
          Length = 443

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 146/368 (39%), Positives = 214/368 (58%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+FA LGL   +V  +    Y  PTP+Q + IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MNFAKLGLIEPLVRTLQALDYTTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV  N  +Y +N  L+   + GG+    Q  +
Sbjct: 61  QRLALEGEKVAANSVRALVLVPTRELAEQVHANVREYAENLPLSTYAVYGGVSINPQMMR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+LD F +  +    ++ LV+DEADRMLD+GF   +Q + + +P  R
Sbjct: 121 LRRGVDLLVATPGRLLDLFRQNAIKFGQVQTLVLDEADRMLDLGFAEELQAVYAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D+++ ++   L +P  IEV+  ++ A T++   V    +           
Sbjct: 181 QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNAAASTVKQWLVPVDKKRKADLFCHLLR 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            Q     K  ++F   +  V  L   L  +G +   IHG+  Q +R + L +FK   +Q+
Sbjct: 241 KQRW---KQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLA 357

Query: 359 AIEKLIEK 366
           +IE LI +
Sbjct: 358 SIETLIRQ 365


>gi|328783258|ref|XP_392069.4| PREDICTED: ATP-dependent RNA helicase abstrakt isoform 1 [Apis
           mellifera]
          Length = 621

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 134/395 (33%), Positives = 200/395 (50%), Gaps = 16/395 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G VKPTPIQI+ IP VL   D+ GIA TG+GKT  FVLP++ 
Sbjct: 181 SFKEMKFHRGILNGLEQKGIVKPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFVLPIIM 240

Query: 62  IL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
                       R   P  LI+ P+RELA Q  D    Y           +   L IGG+
Sbjct: 241 FCLEQEVAMPFVRNEGPYGLIICPSRELAKQTYDIIRHYTNSLRQAGCPEIRSCLAIGGV 300

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
           P     + + +G  +++ TPGR++D  ++  + ++    L +DEADRM+DMGF   ++ I
Sbjct: 301 PVSESLEVINKGVHIMVATPGRLMDMLDKKMVKLSVCRYLCMDEADRMIDMGFEEDVRTI 360

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       V       +
Sbjct: 361 FSFFRGQRQTLLFSATMPKKIQN----FARSALVKPVTINVGRAGAASMNVVQEVEYVKQ 416

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K++V  +   L  +G    AIHG  DQ  R + +  
Sbjct: 417 EAKIVYLLECLQKTPPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERSRSVEA 476

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD  DV HV N+D+P+  ENY+HRIGRTGR+GR G A T + 
Sbjct: 477 FREGRKDVLVATDVASKGLDFADVQHVINYDMPDDVENYVHRIGRTGRSGRTGIATTFIN 536

Query: 351 K-EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
           K  D   +  ++ L+ +    +   L  L    EK
Sbjct: 537 KANDESVLLDLKHLLMEAKQKVPPFLLELCSENEK 571


>gi|321459437|gb|EFX70490.1| hypothetical protein DAPPUDRAFT_61214 [Daphnia pulex]
          Length = 509

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 123/390 (31%), Positives = 209/390 (53%), Gaps = 5/390 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI---LEKG 66
           P+++ AV +  +  P+PIQ +  P++L+ HD+ GIAQTGTGKT +F+LP +         
Sbjct: 71  PELLEAVQNQQFKDPSPIQSQAWPVLLKGHDLIGIAQTGTGKTLAFLLPAMIHIEGQPIS 130

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           RA    P  LI+ PTRELA Q+     K+     +    + GG     Q   + +G +++
Sbjct: 131 RAERSGPSVLIMAPTRELAQQIEREVAKFPWK-GIKCLCVYGGGDRRQQIGAVAKGVEIV 189

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+ D    G L  +++  +V+DEADRMLD+GF P I+ I   V   RQ ++ SAT
Sbjct: 190 VATPGRLYDLMQAGALKTSSVSYVVLDEADRMLDLGFEPQIKKILIDVRPDRQIIMTSAT 249

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + +++++  ++ NP ++ V T    A       V    +  K    L   +++ D   
Sbjct: 250 WPEGIRRIANEYMDNPLQVCVGTLDLAACHSVTQHVEILDEEEK-RPRLIDFIRALDPND 308

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+F  +K     +   L   G S   IHG+ +Q  R + L++ + G ++L++A+D+A+
Sbjct: 309 KAIVFVGRKLVADQVASELSLIGISCQCIHGDREQIDREQALADLRSGDVKLLIATDVAS 368

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RG+DI D+ H+ N+D P  AE Y+HRIGRTGRAGR G A + + +ED      +  ++++
Sbjct: 369 RGIDIKDITHILNYDFPRHAEEYVHRIGRTGRAGRTGIAISFMTREDWSKASDLIDILKE 428

Query: 367 KVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
               +  +L  ++       + +    ++N
Sbjct: 429 ANQEIPPELIKMSERFGAWKVRKDEERQRN 458


>gi|67967591|dbj|BAE00278.1| unnamed protein product [Macaca fascicularis]
          Length = 529

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 139/401 (34%), Positives = 215/401 (53%), Gaps = 6/401 (1%)

Query: 2   DFAD-LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F D     P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT  +++P  
Sbjct: 123 TFDDAFQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGF 182

Query: 61  TILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L+       +   P  L+L PTRELA QV     KY     L    + GG   + Q +
Sbjct: 183 IHLDLQPTLKGQRNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIE 241

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L +G D++I TPGR+ D      + + NI  LV+DEAD+MLDMGF P I  I   V   
Sbjct: 242 ELRKGVDIIIATPGRLNDLQMNNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPD 301

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++ SAT    + ++++++L+ P  + V T    A +     +    +  K   +   
Sbjct: 302 RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMHT- 360

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            LQ+  +    I+F ++K    +L   L     S+ ++HG+ +QR R K L NFK G ++
Sbjct: 361 FLQNMSSTDKVIVFVSRKAVADHLSSDLILGNISIESLHGDREQRDREKALENFKTGKVR 420

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+DLA+RGLD+ DV HV+NFD P   E Y+HRIGRTGRAGR G + T + + D +  
Sbjct: 421 ILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVA 480

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
             +  ++E+    +  +L S+    +     +    +   P
Sbjct: 481 SELINILERANQSIPEELVSMAERFKAHQQKKEMERKMERP 521


>gi|15641418|ref|NP_231050.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121591273|ref|ZP_01678569.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121727543|ref|ZP_01680655.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
 gi|147674915|ref|YP_001216964.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|153817750|ref|ZP_01970417.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
 gi|153821347|ref|ZP_01974014.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
 gi|227081578|ref|YP_002810129.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
 gi|229505017|ref|ZP_04394527.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229511313|ref|ZP_04400792.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229518431|ref|ZP_04407875.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
 gi|229608021|ref|YP_002878669.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254848525|ref|ZP_05237875.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
 gi|255745787|ref|ZP_05419735.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|262158933|ref|ZP_06030045.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
 gi|262169296|ref|ZP_06036988.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|298498514|ref|ZP_07008321.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
 gi|9655903|gb|AAF94564.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121546878|gb|EAX57035.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121630127|gb|EAX62530.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
 gi|126511688|gb|EAZ74282.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
 gi|126521165|gb|EAZ78388.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
 gi|146316798|gb|ABQ21337.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|227009466|gb|ACP05678.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
 gi|227013322|gb|ACP09532.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|229345146|gb|EEO10120.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
 gi|229351278|gb|EEO16219.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229357240|gb|EEO22157.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229370676|gb|ACQ61099.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254844230|gb|EET22644.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
 gi|255736862|gb|EET92259.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|262022109|gb|EEY40818.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|262029118|gb|EEY47770.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
 gi|297542847|gb|EFH78897.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
          Length = 397

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 149/373 (39%), Positives = 219/373 (58%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V  V   GY KPT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YGK+  L    + GG+  +AQ ++L
Sbjct: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  +++P  I +    ++   I    +                 
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 238 INEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357

Query: 360 IE----KLIEKKV 368
           IE     LIE++V
Sbjct: 358 IESRLGHLIERRV 370


>gi|290543446|ref|NP_001166415.1| probable ATP-dependent RNA helicase DDX6 [Cavia porcellus]
 gi|81907597|sp|Q9WTM2|DDX6_CAVPO RecName: Full=Probable ATP-dependent RNA helicase DDX6; AltName:
           Full=DEAD box protein 6; AltName: Full=Oncogene RCK
           homolog
 gi|4760645|dbj|BAA77391.1| DEAD box protein [Cavia porcellus]
          Length = 472

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 110/377 (29%), Positives = 194/377 (51%), Gaps = 8/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 86  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALTGRDILARAKNGTGKSGAYLIPLLE 145

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L+    +    + +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 146 RLDL---KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 202

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 203 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 262

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK    F+ +  +           T++           ++       L 
Sbjct: 263 LLYSATFPLSVQK----FMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLF 318

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 319 PRLQTNQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 378

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 379 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 438

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +  ++  
Sbjct: 439 EEQLGTEIKPIPSNIDK 455


>gi|300781219|ref|ZP_07091073.1| ATP-dependent RNA helicase RhlE [Corynebacterium genitalium ATCC
           33030]
 gi|300532926|gb|EFK53987.1| ATP-dependent RNA helicase RhlE [Corynebacterium genitalium ATCC
           33030]
          Length = 408

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 138/412 (33%), Positives = 210/412 (50%), Gaps = 6/412 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLGL   +V  +   G  +P PIQ   IP VL   DV G   TG+GKT +F LPML 
Sbjct: 3   TFSDLGLPRPIVNVLTKQGIEEPFPIQEAAIPAVLDGRDVLGRGPTGSGKTFAFGLPMLA 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L    ++   PR L+L PTRELAAQ+    +       L V  ++GG+      + L  
Sbjct: 63  LLAGSPSKPGHPRGLVLAPTRELAAQIRQRLDDPAAAAGLRVLEVVGGVNINNHIRSLAA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+L+ TPGR  D  N+GKL  +++ +  IDEAD+M DMGF+P ++ +    P   Q L
Sbjct: 123 PVDLLVATPGRAQDLINQGKLSFDSVAVTAIDEADQMADMGFLPQVRKLVDATPENGQRL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  +++K+ + +L +P         +  +T++H  +   ++ S+   +       
Sbjct: 183 LFSATLDGDVEKLVQRYLTDPVTHSTAPAQAAVDTMQHYQLLVGSRESRNEIVPL----I 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K  V      L + G     +HG+  Q +R + +  F +G++ ++VA
Sbjct: 239 AAREGKTIMFMRTKHGVDRQVKKLRRVGIEAQPLHGDKGQGARTRAIEGFTDGSVPVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI DV  V + D P   ++Y+HR GRT RAG  G   TLV  E  K +D + 
Sbjct: 299 TDIAARGIDISDVSLVVHIDPPAEHKSYLHRAGRTARAGTSGTVVTLVMDEQRKEVDQLL 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           +  +  VD     ++ ++  L KI  AQ  H R   P  Q  T    R K  
Sbjct: 359 R--KAGVDAQKVRVTPMSDELVKITGAQEPHGRPLPPPGQPQTTKRSRGKRR 408


>gi|315178988|gb|ADT85902.1| ATP-dependent RNA helicase DbpA [Vibrio furnissii NCTC 11218]
          Length = 460

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 140/402 (34%), Positives = 227/402 (56%), Gaps = 9/402 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L L P+++  +   G+   TPIQ +++P +L   DV G  +TG+GKTA+F L +L 
Sbjct: 5   SFAALNLKPELLSNLDTMGFTHMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+   +L+L PTRELA QVA +    G+  +    L +  G+P   Q   LE
Sbjct: 65  NLHVKRFRVQ---SLVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH ++G++ ++ +  LV+DEADRML+MGF   +  I +  P  RQT
Sbjct: 122 HGAHILVGTPGRILDHLSKGRIDLSELNTLVLDEADRMLEMGFQEALDAIIAEAPKQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +Q+++++  ++   I+V +   T ET          + ++        L 
Sbjct: 182 LLFSATYPEAIQEIAQSVTRDALMIKVAS---THETSSIRQQFYKVEGTEARDEALATLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++FCN K+ V ++   L  +GFSV  +HG+++QR R + L  F   +I ++V
Sbjct: 239 LNHQPESAVVFCNTKREVQSVADELHHKGFSVIELHGDMEQRERDQALVQFANKSISVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G A +  + +++  I  I
Sbjct: 299 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSQGLAISFFSDKEMYRIAQI 358

Query: 361 EKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           E+ ++  +    L   +  + P    +   Q +  +K    P
Sbjct: 359 EEYMDIVISPAELPEPVKGVAPYRSNMVTIQIDGGKKQKVRP 400


>gi|324502659|gb|ADY41168.1| ATP-dependent RNA helicase cgh-1 [Ascaris suum]
          Length = 434

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 110/373 (29%), Positives = 177/373 (47%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  L   ++  + + G+ +P+PIQ  +I + L   D+   A+ GTGKT ++ +P  
Sbjct: 37  IEFEDFCLKRDLLMGIFEKGWERPSPIQEASIAIALSGQDILARAKNGTGKTGAYCIP-- 94

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +EK    V+  + LI+ PTRELA Q +    +  K+ NL V +  GG        +L 
Sbjct: 95  -CIEKIDPEVKKIQALIIVPTRELALQTSQVCVELSKHLNLKVMVTTGGTDLRDDIMRLN 153

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  ++    M+    LV+DEAD++L   F   +  +   +P  RQ 
Sbjct: 154 GVVHLVVATPGRVFDLIDKRVADMSRCATLVLDEADKLLSQDFQDILDRVIKFLPPERQI 213

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L+SAT    +      F+QN              T+            K+       L 
Sbjct: 214 MLYSATFPHTVAT----FMQNHMNHPYEINLMDELTLLGITQFYAYVQEKQKVHCLNTLF 269

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G+ + +V
Sbjct: 270 RKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSRMAQNHRNRVFHDFRRGSCRNLV 329

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++   
Sbjct: 330 CSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGIAINLITYEDRFNLRRT 389

Query: 361 EKLIEKKVDWLNG 373
           E  +   +  +  
Sbjct: 390 EAELRTHIAPIPK 402


>gi|302850370|ref|XP_002956712.1| hypothetical protein VOLCADRAFT_77220 [Volvox carteri f.
           nagariensis]
 gi|300257927|gb|EFJ42169.1| hypothetical protein VOLCADRAFT_77220 [Volvox carteri f.
           nagariensis]
          Length = 648

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 106/408 (25%), Positives = 173/408 (42%), Gaps = 15/408 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FAD+ L P V+  +   G  KPT IQ++ +P+ L   D+ GIA TG+GKT  F LPM  
Sbjct: 200 SFADMKLPPAVLRVLAGKGIKKPTQIQMQGLPVALSGRDMIGIASTGSGKTLVFALPMVL 259

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 +     +   P  +++ P+RELA Q  +  + Y K         I  +      
Sbjct: 260 IALQEEMRMPLGQNEGPIGMVICPSRELATQTYEIADMYCKALGADRYPEIRAMLCIGGI 319

Query: 117 KKLERGADVLICTP-------GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                   +                    R   L     + + +    +  +GF   +++
Sbjct: 320 DAKPMYETIRRGVHAVVATPGRLKDLLHKRRMNLDVCRFLCLDEADRMVDQVGFEDDVRD 379

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I S     RQTL+FSATM  +++  +E+ L +P  +  +T +                  
Sbjct: 380 ILSFFRGQRQTLMFSATMPAKIKAFAESALVDPLLVRFHTAAVWCAANMDVIQEVEYVKE 439

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           +           +      I     K++V  +   L  QG    A+HG+  Q  R   + 
Sbjct: 440 EAKLPYLLECLQKTAPPVLIFA-ENKRDVDAIHEYLMVQGVEAVAVHGDKAQEDRHAAIH 498

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T +
Sbjct: 499 QFKAGEKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRCGKTGVATTFI 558

Query: 350 AKEDIKH--IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
             +      +  ++ L+ +    +   L +L+ PLE     +     K
Sbjct: 559 NTKQCSETILLDLKHLLREAKQRVPHFLLALDDPLEAQAELEEKSGVK 606


>gi|262275236|ref|ZP_06053046.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
 gi|262220481|gb|EEY71796.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
          Length = 410

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 152/378 (40%), Positives = 230/378 (60%), Gaps = 6/378 (1%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P +   +   GY  PT IQ + IP VL   DV G AQTGTGKTA+F LP++  L +  
Sbjct: 9   LHPTLQHTLNALGYSDPTAIQQQAIPHVLDGKDVMGAAQTGTGKTAAFALPVIHQLLERG 68

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
            +    R L++ PTRELA QV +   +Y ++ +L    L GG     Q  +L +  ++++
Sbjct: 69  VKGAA-RVLVVTPTRELAQQVYEKVVEYSQHTSLKCVALYGGANINPQKNQLTKKPEIIV 127

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+LDH + G L +N+++ L++DEADRMLDMGFI  I+ +   +P TRQTL FSAT 
Sbjct: 128 GTPGRLLDHLHIGTLTLNSLDTLILDEADRMLDMGFISDIKRLMKKMPKTRQTLFFSATY 187

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
             ++  ++   L NP RIEV+T +STAET+       +    K+   L   L     ++ 
Sbjct: 188 PKQVVDLAYRLLSNPVRIEVSTANSTAETV---NQLVHPVDKKRKRELLSYLIGSRNLQQ 244

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            ++F   +++   L + L+  G    AIHG   Q +R ++L  FK G ++++VA+D+AAR
Sbjct: 245 VLVFAKTRQSTEALANELKLDGLKAEAIHGEKTQGARNRVLEGFKSGEVRVLVATDVAAR 304

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           GLDIP +  VFN+++P++ E+YIHRIGRTGRAG+ G A +LV++E+   + AIE LI+ +
Sbjct: 305 GLDIPSLDTVFNYELPHQPEDYIHRIGRTGRAGKPGMAISLVSREEEGMLTAIETLIDLR 364

Query: 368 V--DWLNGDLSSLNPPLE 383
           +  +WL G    L+  +E
Sbjct: 365 LPQEWLAGYEPDLHADME 382


>gi|13161879|emb|CAC33024.1| hypothetical protein [Takifugu rubripes]
          Length = 476

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 148/442 (33%), Positives = 220/442 (49%), Gaps = 20/442 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ LGLS  ++      G  K TP+Q   +P +LQ  D  G A+TG+GKTA+FVLP+L 
Sbjct: 3   DFSSLGLSDWLIKQCKQLGIQKATPVQENCVPAILQGSDCMGCAKTGSGKTAAFVLPVLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L            L+L PTR LA Q+A+ F   GK   L   +++GG+    Q  +L  
Sbjct: 63  KL---SEDPYGIFCLVLTPTRSLAYQIAEQFRVLGKPLGLKDCIIVGGMGMVTQALELSN 119

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYI---QNITSLVPFT 177
              V++ TPGR+ DH           I+ LV+DEADR+L+ G   +    + I + VP  
Sbjct: 120 QPHVVVATPGRLADHIRSSSTFSLAKIQFLVMDEADRLLEQGCTDFTKDLETILTAVPAK 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKCALLQ 236
           RQTLLFSAT+TD LQ++    +  P   E  +   T E   +   +            L 
Sbjct: 180 RQTLLFSATLTDTLQELKHIAMNKPFFWESKSECRTVEELDQRYILTPEKVKDAYLVHLI 239

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q    Q    + IIF +  K    L   L+K  F   ++H  + Q  R   L+ FK    
Sbjct: 240 QTFTDQHDDWSIIIFTSTCKYCQILTMMLQKFHFPTISLHSMMKQVQRFANLAKFKASVY 299

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++A+D+AAR LDIP V  V   + P   + YIHR+GRT RAG  G + TLV + DI  
Sbjct: 300 KILIATDVAARCLDIPTVQVVITNNTPGLPKIYIHRVGRTARAGN-GVSITLVTQYDIHL 358

Query: 357 IDAIEKLI-EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK-NYS 414
           + +IE+ I E K+     +   +   L      Q N  R+   I  +ST FD +K+ N  
Sbjct: 359 VHSIEEQIRETKLKEFPVEEKEVLKIL-----TQVNVTRRECEI-LESTDFDEKKEINKR 412

Query: 415 SQ---KSHIPLKESEKISKLQQ 433
            Q   +  +P  E+++ ++L++
Sbjct: 413 KQLILEGKVPDLEAKRKAELEK 434


>gi|71082870|ref|YP_265589.1| ATP-dependent RNA helicase [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71061983|gb|AAZ20986.1| probable ATP-dependent RNA helicase [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 582

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 139/463 (30%), Positives = 225/463 (48%), Gaps = 23/463 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L +   +  ++    + KPTPIQ   IP+ L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKLLKIEDSLKNSLEKMKFTKPTPIQAMAIPVALEGKDILGTAQTGTGKTLAFSIPLIN 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   +    +      E        +A          N+  ALLIGG   + Q ++L  
Sbjct: 63  KLILDKNAFALVMCPTRE---LATQVMAAIKSIISDKINIKTALLIGGEAMQKQLRQLGN 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + +++ TPGRI DH  R  L ++  + LV+DE DRMLDMGF P I+ I   VP   QTL
Sbjct: 120 RSRIIVGTPGRINDHLKRKSLNLSATKYLVLDETDRMLDMGFTPQIELILKFVPKDHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   + ++SE +L  P+RI   + S     I+   +  +    K+    Q + Q 
Sbjct: 180 LFSATLPQNIVRISERYLNEPQRISTGSTSVPIAKIKQETLQVF----KENKYDQLVDQF 235

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + ++F   K+    +   L+++G S  AIHG++ Q  R +++++F++G  ++++A
Sbjct: 236 IARKGSILVFVKTKRGADKMVKRLKEEGHSADAIHGDLRQSKRDRVITSFRKGLKRILIA 295

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP + HV NFD+P   E+Y+HRIGRT RAG  G A T +  +D    + I 
Sbjct: 296 TDVAARGLDIPLIQHVINFDLPQVPEDYVHRIGRTARAGTEGSALTFLTPDDRSMWNEIS 355

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           KLI+               P  +         ++      K   F   KK++   +    
Sbjct: 356 KLIDPNF-----------KPAPRGARGDSRGGKRGKAPYNKKRKFRDEKKSFGKGRPDRS 404

Query: 422 LKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            ++ EK     +        S G +    ++  P    +  +K
Sbjct: 405 SRDGEK-----KSFGYKGKSSFGDKSKPSSYGRPDRSSRDGEK 442


>gi|330504959|ref|YP_004381828.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
 gi|328919245|gb|AEB60076.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
          Length = 447

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 148/374 (39%), Positives = 223/374 (59%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  + D  Y  PTP+Q + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRTLADLDYKTPTPVQSQAIPTVLKGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV  +F+ YG++  LT   + GG+    Q  K
Sbjct: 61  QRLTLEGPQVASNSVRALVLTPTRELAEQVLQSFQAYGQHLPLTSYAVYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD + +  +  + ++ L++DEADRMLD+GF   +  + S +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLYRQNAVKFSQLQTLILDEADRMLDLGFARELDELFSALPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D +++++   L++P  +EV+  ++ A+T+            K+ + L   
Sbjct: 181 QTLLFSATFSDAIRQMAGELLRDPLSVEVSPRNAAAKTV---KQWLIPVDKKRKSELFLH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L         ++F   +K V  L   L   G +  +IHG+  Q SR++ L  FK G +Q+
Sbjct: 238 LLQVKRWGQVLVFAKTRKGVDQLEQELLAMGVAADSIHGDKPQPSRLRALERFKAGEVQI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+Y+HRIGRTGRAG  G+A +LV  +++  + 
Sbjct: 298 LVATDVAARGLDIDDLPLVVNLDLPINAEDYVHRIGRTGRAGSTGEAISLVCADEVDQLA 357

Query: 359 AIEKLIEKKVDWLN 372
           AIE L ++ +  ++
Sbjct: 358 AIENLTQQLIKRVD 371


>gi|255719254|ref|XP_002555907.1| KLTH0H00638p [Lachancea thermotolerans]
 gi|238941873|emb|CAR30045.1| KLTH0H00638p [Lachancea thermotolerans]
          Length = 433

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 125/423 (29%), Positives = 205/423 (48%), Gaps = 21/423 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA LG+S  +V A+      +PT IQ   IP +LQ  D  G A+TG+GKT +F  PMLT
Sbjct: 4   EFATLGISKWLVEALQAMKITQPTAIQKACIPQILQGKDCIGGAKTGSGKTIAFGAPMLT 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +          ++L PTRELA Q+A+ F   G + N+ VAL++GG     Q   L+R
Sbjct: 64  KWSE---DPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVALVVGGESIVDQAINLQR 120

Query: 122 GADVLICTPGRILDHFNRGKLLMN----NIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
               ++ TPGR+  H               + LV+DEAD +L   F  ++    S++P  
Sbjct: 121 KPHFIVATPGRMAHHIMNSGEDTIGGLKRAKFLVLDEADILLTDTFSEHLATCISILPPK 180

Query: 178 RQTLL--FSATMTDELQKVSENF-----LQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +     F+AT+TD+++ +                  +       +          +  K
Sbjct: 181 EKRQTLLFTATVTDQVKALQNAPAAEGKPPLFSYEVESMDKVAIPSTLKTTYLLVPEQVK 240

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L Q L  +     + IIF N+      L  +L++    V ++H  + Q+ R   L  
Sbjct: 241 EAYLYQILTNATYNESSAIIFVNRTVTAEILRRTLKQLDVRVASLHSQMPQQERTNSLHR 300

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+    ++++A+D+A+RGLDIP V  V N+D+ +  + +IHR GRT RAGR G++   VA
Sbjct: 301 FRANAARVLIATDVASRGLDIPTVQLVINYDISSNPDTFIHRAGRTARAGRSGESICFVA 360

Query: 351 KEDIKHIDAIEKLIEKKVDWLNG--DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
             D+  I+AIE+ I KK++      D + +   L K+ +A     ++ + +  +   F  
Sbjct: 361 PRDVSRIEAIEERINKKMEEFKDVHDTAVIRKALNKVTVA-----KRESLMSMEKENFGE 415

Query: 409 RKK 411
           R+K
Sbjct: 416 RRK 418


>gi|322695045|gb|EFY86860.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Metarhizium
           acridum CQMa 102]
          Length = 1161

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 133/422 (31%), Positives = 212/422 (50%), Gaps = 17/422 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  GL+ + +  + + GY KPT IQ++ IP ++   DV G+A+TG+GKT +F+LPM  
Sbjct: 535 KWAQCGLTRQTLDVIDNLGYEKPTTIQMQAIPTLMSGRDVVGVAKTGSGKTVAFLLPMFR 594

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  LI+ PTRELA Q+  + + + K+  L      GG P   Q  +L
Sbjct: 595 HIMDQPPIKDTDGPIGLIMTPTRELATQIHRDCKPFLKSMGLRAVCAYGGAPIRDQIAEL 654

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D           +  +  +V+DEADRM DMGF P +  I + +  
Sbjct: 655 KRGAEIIVCTPGRMIDLLAANQGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIFAGMRP 714

Query: 177 TRQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +QT+LFSATM   +     +      +           E  +   V   +    +   L
Sbjct: 715 DKQTILFSATMPRIIDSLTKKVLKSPVEITVGGRSVVAKEIEQIVEVREESTKFFRVLEL 774

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L  +D     +IF ++++   +L   L  +G+   +IHG  DQ  R   +S+FK+G 
Sbjct: 775 LGELYDRDEDARALIFVDRQEKADDLLKELMVKGYPCMSIHGGKDQVDRDSTISDFKKGV 834

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + L+VA+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T V  +   
Sbjct: 835 VPLLVATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGVAVTFVTPDQEN 894

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK-NNPIPQKSTGFDRRKKNYS 414
               I K +E+          S  P  E+++  +  H  K  +   + S+GF  +  +  
Sbjct: 895 CAPGIAKALEQ----------SEQPVPERLNEMRKAHREKVKSGKAKDSSGFGGKGLDRL 944

Query: 415 SQ 416
            Q
Sbjct: 945 DQ 946


>gi|261491682|ref|ZP_05988263.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261494445|ref|ZP_05990931.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309829|gb|EEY11046.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261312635|gb|EEY13757.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 411

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 126/408 (30%), Positives = 206/408 (50%), Gaps = 9/408 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   V+ A+   G+   TPIQ KT P+ L  +D+ G AQTGTGKT +F++     
Sbjct: 10  FIDFPIHTNVLNALNSKGFEFCTPIQAKTFPITLNGNDIAGQAQTGTGKTLAFLIATFNH 69

Query: 63  LEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L           PR LIL PTRELA Q+  + + +  + +L +AL  GG  ++ Q + +E
Sbjct: 70  LLNNEIETAKNQPRALILAPTRELAVQIGADAQLFLPHCDLKLALAYGGDGYDKQIQAIE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P   + 
Sbjct: 130 KGVDILVGTTGRVIDYVKQGIIHLDKIQVIVLDEADRMFDLGFIKDIRYLMRKAPVPTER 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L    + T   +     +        +        T        +   ++    L   L 
Sbjct: 190 LTLLFSATLSAKVRELAYEDMDNAEYI-EIEPLQRTGHRIKEELFYPSNEDKMALLLTLL 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     +IF N K     +   L   G  +  + G+I Q+ R+ +L NF +G + ++V
Sbjct: 249 EEEWPDRCMIFANTKHKCEEIWQYLAADGHRIGMLTGDIPQKKRLSLLDNFTKGNLDILV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARGL IPDV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +    ++ AI
Sbjct: 309 VTDVAARGLHIPDVTHVFNYDLPDDKEDYVHRIGRTGRAGESGHSISFACERYAVNLPAI 368

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           E+ I  ++     D  SL      + + + N +R       K+    R
Sbjct: 369 EEYIGHQIPVSQYDKESL------LTLPKVNRSRSKKTFLAKTKKNSR 410


>gi|297565173|ref|YP_003684145.1| DEAD/DEAH box helicase domain-containing protein [Meiothermus
           silvanus DSM 9946]
 gi|296849622|gb|ADH62637.1| DEAD/DEAH box helicase domain protein [Meiothermus silvanus DSM
           9946]
          Length = 538

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 139/398 (34%), Positives = 213/398 (53%), Gaps = 22/398 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F D  L P+V+ A+   G+  PT IQ + IPL L+  DV G A+TGTGKT +F LP+ 
Sbjct: 1   MEFKDFALRPEVLAALEAKGFTTPTAIQAQAIPLALEGRDVLGQARTGTGKTLAFALPIA 60

Query: 61  TILEKGR---------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
             LE             R R PR  IL PTRELA QVA        + +  V  + GG  
Sbjct: 61  HKLEAPFRGDSRVASRQRGRPPRAFILTPTRELALQVAGELAWVAPHLH--VLPIYGGTG 118

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           + +Q + L RGADV++ TPGR +D+ N+G L ++++EI V+DEAD ML MGF   ++ + 
Sbjct: 119 YGSQAEGLRRGADVVVATPGRAIDYLNQGILDLSHVEIAVLDEADEMLSMGFEEDVEKLL 178

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
              P +RQT LFSAT+    ++++E ++++P        +   +              + 
Sbjct: 179 GATPASRQTFLFSATVPSWAKRLAERYMRDPVH-----VNVVKDEQVSYEELALQAPLQT 233

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                  +      +  I+F   K  V  L   L+ +G     IHG++ QR R ++L  F
Sbjct: 234 RLNTLTDVIFAYAPERTIVFTRTKAEVDELATGLQARGIGAAPIHGDMSQRERERVLGRF 293

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +EGT  ++VA+D+AARGLDIP+V  V +F +P +AE Y HR GRTGRAGR G+       
Sbjct: 294 REGTDTVLVATDVAARGLDIPEVDLVVHFRLPEKAEPYQHRSGRTGRAGRSGRVILFYGP 353

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
            + + ++ +E  ++++   +N       P  E++  A+
Sbjct: 354 RERRELENLEYAVKRRFKRVN------PPTPEEVQEAK 385


>gi|150025863|ref|YP_001296689.1| DEAD-box ATP dependent DNA helicase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772404|emb|CAL43884.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
           [Flavobacterium psychrophilum JIP02/86]
          Length = 644

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 210/373 (56%), Gaps = 9/373 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLP 58
           M+ F  LGL+  ++ A++D G+  PT +Q K IP++L++  D+  +AQTGTGKTA+F  P
Sbjct: 1   MNKFEQLGLTESLLRAIIDLGFENPTEVQEKAIPMLLEKDIDLVALAQTGTGKTAAFGFP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNK 117
           ++  ++      +    LIL PTREL  Q+ +  + Y K       + + G      Q +
Sbjct: 61  VIQKIDANNRNTQA---LILSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQAR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            ++RGA +++ TPGR+ D  NR  + ++ I   ++DEAD ML+MGF   I NI S  P  
Sbjct: 118 DIKRGAQIIVATPGRMQDMINRRLVDISQINYCILDEADEMLNMGFYEDIVNILSTTPDE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           + T LFSATM  E+ ++ + F+ +P  I V   +             Y   ++      +
Sbjct: 178 KNTWLFSATMPAEVARIGKQFMTDPIEITVGAKN---SGSATVSHEYYLVNARDRYEALK 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   +     ++FC  K++   +   L + G+S  A+HG++ Q  R  ++  F+   IQ
Sbjct: 235 RLADANPDIFSVVFCRTKRDTQAVAEKLVEDGYSAAALHGDLSQAQRDGVMKAFRGRQIQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ +V HV N+ +P+  E Y HR GRTGRAG+ G +  +V K +I+ I
Sbjct: 295 MLVATDVAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSEIRKI 354

Query: 358 DAIEKLIEKKVDW 370
            +IE++I++K + 
Sbjct: 355 SSIERIIKQKFEE 367


>gi|84994752|ref|XP_952098.1| ATP-dependent RNA helicase [Theileria annulata strain Ankara]
 gi|65302259|emb|CAI74366.1| ATP-dependent RNA helicase, putative [Theileria annulata]
          Length = 416

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 114/372 (30%), Positives = 189/372 (50%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L  HD+   A+ GTGKTA+FV+P+L 
Sbjct: 44  EFEDYFLKRELLMGIFEKGFERPSPIQEESIPVALAGHDILARAKNGTGKTAAFVIPLLQ 103

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +++    LIL PTRELA Q +   ++ GK   +   +  GG        +L +
Sbjct: 104 KLDTSEPQIQ---GLILLPTRELALQTSAVVKELGKYLEVQCMVSTGGTSLRNDIMRLYK 160

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L  TPGRILD  N+G  +++    +V+DEAD+ML   F P ++ +   +P  +Q +
Sbjct: 161 PVHILCGTPGRILDLTNKGVAVLSQCATVVLDEADKMLSQEFCPIVEALLKFLPTEKQII 220

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    +Q     F +               T++           ++       L +
Sbjct: 221 LYSATFPASVQA----FKEQYLPNAHEINLMDDLTLKGITQFYAYVEERQKVHCLSTLFA 276

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + GFS   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 277 RLQINQAIIFCNSVVRVELLAKKITELGFSCFYIHAKMMQSHRNRVFHDFRNGACRCLVS 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D   V  V NFD P  +  Y+HRIGR+GR G  G A  LV ++D + +  IE
Sbjct: 337 SDLFTRGIDFRFVNVVVNFDFPKNSSTYLHRIGRSGRFGHLGLAINLVTEQDKESLFKIE 396

Query: 362 KLIEKKVDWLNG 373
           + +  ++  +  
Sbjct: 397 EELATEIKPIPA 408


>gi|242050992|ref|XP_002463240.1| hypothetical protein SORBIDRAFT_02g040380 [Sorghum bicolor]
 gi|241926617|gb|EER99761.1| hypothetical protein SORBIDRAFT_02g040380 [Sorghum bicolor]
          Length = 502

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 139/421 (33%), Positives = 212/421 (50%), Gaps = 14/421 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS  +V A    G  +PT +Q + IP  L   DV GIA+TG+GKTA+F LP+L 
Sbjct: 77  TFADLGLSQWLVDACDALGMRRPTAVQRRCIPRALAGEDVLGIAETGSGKTAAFALPILH 136

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    V       L PTRELAAQ+A+ F   G    L     IGG    AQ K L R
Sbjct: 137 RLGEDPYGVAALA---LAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDSLAQAKGLSR 193

Query: 122 GADVLICTPGRILDHFNRGKL---LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              V++ TPGRI            +    + LV+DEADR+LD+ F   ++ I   +P  R
Sbjct: 194 RPHVVVATPGRIATLVKDDPDLAKVFARTKFLVLDEADRVLDVNFEEELRVIFGCLPKKR 253

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT LFSATM+D L+ + E         E      T ET++  ++    Q  +        
Sbjct: 254 QTFLFSATMSDNLRSLLELSGNKSYFFEAYEGFKTVETLKQQYIHVPPQGKELHLWYLLS 313

Query: 239 LQ---SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +     +D +++ I+F ++      L   LE+ G+   A++ +  Q  R+  L+ FK G 
Sbjct: 314 IMKEKKEDPIRSAIVFVSKCNVCQYLDLLLEELGYPAVALNSHKSQAQRLLALNRFKSGQ 373

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + +++++D+ +RGLDI  V  V N+D+P    +YIHR+GRT RA R G A + V ++DI 
Sbjct: 374 VPILISTDVGSRGLDIQTVDLVINYDMPMSPRDYIHRVGRTARASRGGLAISFVTQKDIC 433

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +  IE ++ K+++    +   +       DI +   AR+   +  +  G D + +    
Sbjct: 434 LLHEIEDVVGKQLEAYECNDKEVTK-----DITKVFKARRLAKMRSRDEGHDEKVEARKE 488

Query: 416 Q 416
           Q
Sbjct: 489 Q 489


>gi|229529522|ref|ZP_04418912.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|229333296|gb|EEN98782.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|327484073|gb|AEA78480.1| ATP-dependent RNA helicase VC1407 [Vibrio cholerae LMA3894-4]
          Length = 397

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 151/403 (37%), Positives = 227/403 (56%), Gaps = 7/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V  V   GY KPT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YGK+  L    + GG+  +AQ ++L
Sbjct: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D F +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDVLVATPGRLMDLFGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  +++P  I +    ++   I    +                 
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 238 INEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           IE  +   ++     +     P + + I+  N+  K+    Q 
Sbjct: 358 IESRLGHLIER---RVVEGFEPKKPVPISILNYVPKHKRAAQD 397


>gi|170583206|ref|XP_001896476.1| ATP-dependent RNA helicase T26G10.1 in chromosome III [Brugia
           malayi]
 gi|158596304|gb|EDP34674.1| ATP-dependent RNA helicase T26G10.1 in chromosome III, putative
           [Brugia malayi]
          Length = 462

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 126/439 (28%), Positives = 233/439 (53%), Gaps = 12/439 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LG++  +  A     + KPT +QI  +P   ++ D+ G+A+TG+GKTA+F +P+L
Sbjct: 24  ITFQKLGVTDVLCEACDRLNWKKPTKVQIAALPHAFKKRDIIGLAETGSGKTAAFAIPIL 83

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKL 119
             L +   ++     L+L PTRELA Q+ + FE  G +  + +A+++GG+          
Sbjct: 84  QALLETPQKLFA---LVLTPTRELAFQIGEQFEALGASIGILIAVIVGGVDTVTQSLALA 140

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +R   ++      +    N     +  ++ LV+DEADR+L+M F   ++ I  ++P  R+
Sbjct: 141 KRPHVIVATPGRLVDHLENTKGFNLRALKYLVMDEADRILNMDFEVELEKILKVIPKERR 200

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T L+SATMT ++ K+    L +P RIEV++   T + ++  ++       K        +
Sbjct: 201 TYLYSATMTKKVAKLERASLNDPVRIEVSSKYQTVDKLKQYYIFIPY---KYKEAYLIYI 257

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  I+FC+   + +     L K GF    +HG + Q  R+  L+ FK     ++
Sbjct: 258 LNEMAGQTAIVFCSTCASALKTALMLRKLGFGAVPLHGQMSQAKRLGSLNKFKSKASTVL 317

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDIP V  V N+DVP ++++Y+HR+GRT RAGR G A T V + D++    
Sbjct: 318 VCTDVASRGLDIPHVDIVLNYDVPTQSKDYVHRVGRTARAGRSGVAITFVTQYDVEIYQK 377

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE+LI KK+       + +   +E+++ AQ    ++   + +K     R+++ +      
Sbjct: 378 IERLIGKKLPLFETVENDVMLLVERVEEAQKLAKQEMKEMEEKKG---RKRRQFDDDDDE 434

Query: 420 IPLKESEKISKLQQDIQEN 438
           +   ++E+ S  ++ ++  
Sbjct: 435 V--NDAEESSAFRKKLKRK 451


>gi|147834872|emb|CAN70196.1| hypothetical protein VITISV_040309 [Vitis vinifera]
          Length = 410

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 122/364 (33%), Positives = 187/364 (51%), Gaps = 5/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  SFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G       + L+L PTRELA Q+       G    + V   +GG       + L  
Sbjct: 101 QLDYGLVE---CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSS 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVG 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 276 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V ++D + +  I+
Sbjct: 336 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 395

Query: 362 KLIE 365
           +   
Sbjct: 396 RFYN 399


>gi|152999859|ref|YP_001365540.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151364477|gb|ABS07477.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 472

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 151/474 (31%), Positives = 233/474 (49%), Gaps = 17/474 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           M F  LGLS  ++ A+ + GY + T +Q K IPL  +  D+   AQTGTGKTASF LP  
Sbjct: 1   MKFETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTASFALPVL 60

Query: 59  ---MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  L        + R L++ PTRELA QV +N +KY +   L    + GG     Q
Sbjct: 61  EKLAAESLTSDSNDKPILRALVMTPTRELAIQVCENIQKYSQFLPLKTLAVYGGANMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K +E+G D+L+ TPGR+ D   + +L ++++  LVIDEADRMLDMGF+  I+ +  L+ 
Sbjct: 121 RKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKRLIA 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              QT+LFSAT +D +++      +           +   T        Y    ++ A L
Sbjct: 181 PQHQTMLFSATYSDAVKQ----LAEKMLNEPQWVNVADTTTASTVVQEVYRVDKRRKAEL 236

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L  ++  +  ++F + K++  +L   L+  G +    HG+  Q +R ++L  FK   
Sbjct: 237 LSELVGRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEEFKASK 296

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGLDI  +  V N ++P  AE+YIHRIGRTGRAG  G+A + V+  D +
Sbjct: 297 LRVLVATDVAARGLDIHALPMVINLELPFLAEDYIHRIGRTGRAGLTGRAISFVSPSDDE 356

Query: 356 HIDAIEKLIEKKVDWL--NGDLSSLNPPLEKIDIAQ---HNHARKNNPIPQKSTGFDRRK 410
            +  IE LIE+K+      G       P    D          + ++  PQ  T    R+
Sbjct: 357 MLAEIEALIEQKLPVSVQPGYEEGTPLPARYRDAPAAPIKPIGKWSHKAPQDRTIGQSRQ 416

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
             Y+  K+       +K S   +    +      F    P   L  N+     +
Sbjct: 417 GKYAKGKAQDSKAGGDKSSSRAKPASGSGKP---FNATKPKSNLVSNKSGFGSR 467


>gi|120554694|ref|YP_959045.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120324543|gb|ABM18858.1| DEAD/DEAH box helicase domain protein [Marinobacter aquaeolei VT8]
          Length = 423

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 131/419 (31%), Positives = 217/419 (51%), Gaps = 12/419 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L  +++ A+   G+   TPIQ +T+P  L   D+ G AQTGTGKTA+F++  +
Sbjct: 11  LRFSDLNLDKRLLDAISKIGFEYCTPIQAETLPWTLACEDLIGQAQTGTGKTAAFLITAI 70

Query: 61  T-----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +++       PR L L PTRELA Q+A + E+        V  ++GG+ ++ Q
Sbjct: 71  QSLLETPIDEKERFASEPRVLALAPTRELAMQIAKDAEQLCHYTGHNVVTVVGGMNYDKQ 130

Query: 116 NKK-LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
            ++      D+L+ TPGR++D      + ++ ++IL++DEADRMLDMGFIP ++ I    
Sbjct: 131 REQLQNEIVDILVATPGRLIDFLGSQDVFLDQLDILILDEADRMLDMGFIPDVKRIIRKC 190

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
               +      + T   Q V        +  E        +T E      +     +   
Sbjct: 191 TPKDERQTLLFSAT-FNQDVLNLASMWTRNAEFVEIEPEQKTAERVEQTVFLVSDNEKLP 249

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +      +  ++  I+F N++    +L   L+ QG  V  + G I Q  R+K L  FK+G
Sbjct: 250 VLVNYLKRPEVEKAIVFANRRDQCRDLEEDLKNQGVKVALMSGEIAQNKRLKTLDQFKKG 309

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            IQ++VA+D+A RG+ +  V HVFN+++P+ AE+Y+HRIGRTGRAG+ G + +   +ED 
Sbjct: 310 QIQVLVATDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGKTGVSVSFAGEEDA 369

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
             +  IEK I +K+     D  +L   ++   I +    R+    PQ ++G   R + +
Sbjct: 370 FALPEIEKYISQKLKTAVPD-ENLTVAMDNPPITRKRGGRR----PQGNSGRGPRPRRH 423


>gi|255081756|ref|XP_002508100.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
 gi|226523376|gb|ACO69358.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
          Length = 464

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 111/375 (29%), Positives = 191/375 (50%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P+L 
Sbjct: 91  EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFTIPVLE 150

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             +       + + ++L PTRELA Q +   ++ GK+ N+ V +  GG   +    +L +
Sbjct: 151 KTDTS---KNVIQAVLLVPTRELALQTSQVCKELGKHLNVQVMVTTGGTSLKDDIMRLHQ 207

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++D  ++G   +N   +L +DEAD++L   F P I  +   +P  RQ L
Sbjct: 208 PVHIVVATPGRLVDLASKGVAKLNQCTMLAMDEADKLLSPEFQPVIAQLIDFLPRNRQIL 267

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    ++     F +   R           T++           K+       L S
Sbjct: 268 LYSATFPVTVKS----FKEKYLRKPFVINLMEELTLKGITQYYAFVEEKQKVHCLNTLFS 323

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 324 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMMQSHRNRVFHDFRNGACRNLVS 383

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  +E Y+HR+GR+GR G  G +  L+  +D  ++  IE
Sbjct: 384 SDLFTRGIDIQSVNVVINFDFPKNSETYLHRVGRSGRFGHLGISVNLITYDDRFNLFRIE 443

Query: 362 KLIEKKVDWLNGDLS 376
           K +  ++  +   + 
Sbjct: 444 KELGTEIQQIPPTID 458


>gi|126344320|ref|XP_001381629.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           [Monodelphis domestica]
          Length = 818

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 141/434 (32%), Positives = 209/434 (48%), Gaps = 35/434 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 390 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 449

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q
Sbjct: 450 WITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 509

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 510 GFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMP 569

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            + Q          E    +    ++  R  V   ++                       
Sbjct: 570 VSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 629

Query: 215 --ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             +  E      +     +       +  Q      IIF NQKK    L  SLEK G++ 
Sbjct: 630 AGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNA 689

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHR
Sbjct: 690 CTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHR 749

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     AQH  
Sbjct: 750 IGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHKP 803

Query: 393 ARKNNPIPQKSTGF 406
                   ++ T F
Sbjct: 804 GTILTKKRREETIF 817


>gi|307252129|ref|ZP_07534028.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860429|gb|EFM92443.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 596

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 131/354 (37%), Positives = 212/354 (59%), Gaps = 7/354 (1%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
            G+V P+PIQ +TIP +L   DV G+AQTG+GKTA+F LP+L  ++      R P+ L++
Sbjct: 1   MGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLLAQIDPT---KRHPQMLVM 57

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLERGADVLICTPGRILDHF 137
            PTRELA QVAD  E++ KN      + + G   ++ Q + L++G+ V++ TPGRILDH 
Sbjct: 58  APTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRALKQGSQVVVGTPGRILDHI 117

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
            RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P   QT LFSATM + +++++  
Sbjct: 118 RRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRITRR 177

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
           F+Q+P+ +++     +A  I   +                     +     IIF   K  
Sbjct: 178 FMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDA---LLRFLEVEEFDAAIIFTRTKTG 234

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
            +++    E+ G+   A++G++ Q++R + L   K G + ++VA+D+AARG+DI  +  V
Sbjct: 235 TIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAARGIDIERISLV 294

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
            NFD+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  IE L++K +D +
Sbjct: 295 VNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKPIDEV 348


>gi|307249783|ref|ZP_07531761.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858198|gb|EFM90276.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 596

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 131/354 (37%), Positives = 212/354 (59%), Gaps = 7/354 (1%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
            G+V P+PIQ +TIP +L   DV G+AQTG+GKTA+F LP+L  ++      R P+ L++
Sbjct: 1   MGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLLAQIDPT---KRHPQMLVM 57

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLERGADVLICTPGRILDHF 137
            PTRELA QVAD  E++ KN      + + G   ++ Q + L++G+ V++ TPGRILDH 
Sbjct: 58  APTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRALKQGSQVVVGTPGRILDHI 117

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
            RG L ++ ++ +V+DEAD ML MGFI  ++ + + +P   QT LFSATM + +++++  
Sbjct: 118 RRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRITRR 177

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
           F+Q+P+ +++     +A  I   +                     +     IIF   K  
Sbjct: 178 FMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDA---LLRFLEVEEFDAAIIFTRTKTG 234

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
            +++    E+ G+   A++G++ Q++R + L   K G + ++VA+D+AARG+DI  +  V
Sbjct: 235 TIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAARGIDIERISLV 294

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
            NFD+P  AE+Y+HRIGRTGRAGR G+A   V   + + +  IE L++K +D +
Sbjct: 295 VNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKPIDEV 348


>gi|257783884|ref|YP_003179101.1| DEAD/DEAH box helicase domain-containing protein [Atopobium
           parvulum DSM 20469]
 gi|257472391|gb|ACV50510.1| DEAD/DEAH box helicase domain protein [Atopobium parvulum DSM
           20469]
          Length = 450

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 138/395 (34%), Positives = 212/395 (53%), Gaps = 31/395 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+LGL+ +++  V   G+  PTP+Q   IP VL   DV   AQTGTGKTA+F+LP L
Sbjct: 3   ITFAELGLNEQILAGVTTLGFSVPTPVQTAAIPAVLAGKDVVASAQTGTGKTAAFMLPTL 62

Query: 61  TILEKGRA------------------------------RVRMPRTLILEPTRELAAQVAD 90
             +   +                               R   PR LI+ PTRELAAQ+ +
Sbjct: 63  QRIAVEKHDKAEKPDGKRNAAAERNAVAERNAKRGTGKRNAYPRALIVTPTRELAAQIDN 122

Query: 91  NFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEIL 150
             +    +      ++ GG  ++ Q   L++G DVL+ TPGR++D  ++    + +I++L
Sbjct: 123 VAKSVCASTGQQAVIVTGGAHYKHQIAALQKGCDVLVATPGRLIDLLDKKHTSLEDIQVL 182

Query: 151 VIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           V+DEADRMLDMGF P +  I   +P   QTLLFSAT+   +    +  L++P+RIE+   
Sbjct: 183 VLDEADRMLDMGFWPSVHRIMEQLPKAHQTLLFSATLPASITSTIDALLKDPERIEIART 242

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
             TA TIE    +      K   L   +       +  ++FC  K  V ++  +L+  G 
Sbjct: 243 GQTAATIEQHLCSVTQGQ-KPQLLKALIDSFDPAPERVLVFCRTKSRVDSIYKNLKAAGL 301

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
            V  +H +  Q++R K L  F+  +IQ++VA+D+ +RG+DI  +  V NFDVP   E+Y+
Sbjct: 302 KVDVMHADRPQKARAKALDRFRSASIQILVATDVMSRGIDIQGIDVVINFDVPLDPEDYV 361

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           HRIGRTGRAG  G+A+T +  +++  +  IE   +
Sbjct: 362 HRIGRTGRAGATGQAYTFMGPDEVTPLREIEYFTK 396


>gi|73996620|ref|XP_863121.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 7 [Canis familiaris]
          Length = 810

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 142/428 (33%), Positives = 207/428 (48%), Gaps = 33/428 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLM 451

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L       + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q  +L  
Sbjct: 452 PLFLN----QGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRM 507

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P + Q  
Sbjct: 508 GCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKP 567

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----------------------ETIE 218
                   E    +    ++  R  V   ++                         +  E
Sbjct: 568 DTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHE 627

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
                 +     +       +  Q      IIF NQKK    L  SLEK G++ C +HG 
Sbjct: 628 RVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGG 687

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
             Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHRIGRTGR
Sbjct: 688 KGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGR 747

Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           AG+ G A T + KED      +++ I      L   +SS  P L     AQH        
Sbjct: 748 AGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHKPGTILTK 801

Query: 399 IPQKSTGF 406
             ++ T F
Sbjct: 802 KRREETIF 809


>gi|154315049|ref|XP_001556848.1| hypothetical protein BC1G_04866 [Botryotinia fuckeliana B05.10]
 gi|160419161|sp|A6RW79|PRP5_BOTFB RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|150848404|gb|EDN23597.1| hypothetical protein BC1G_04866 [Botryotinia fuckeliana B05.10]
          Length = 1151

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 126/430 (29%), Positives = 215/430 (50%), Gaps = 16/430 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL  K +  +   GY +PT IQ++ IP ++   DV G+A+TG+GKT +F+LPM  
Sbjct: 555 KWSQCGLDVKSLDVITKLGYERPTSIQMQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFR 614

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  LI+ PTRELA Q+    + + K   L      GG   + Q   L
Sbjct: 615 HIRDQRPLKGSDGPIGLIMTPTRELATQIHKECKPFLKAMGLRAVCAYGGAIIKDQIADL 674

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR+++     +     +  +  +V+DEADRM DMGF P +  + + +  
Sbjct: 675 KRGAEIIVCTPGRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNIRP 734

Query: 177 TRQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            RQT+LFSATM   +     +      + +         E  +   V    +   +   L
Sbjct: 735 NRQTILFSATMPRIMDALAKKTLQSPVEIVVGGRSVVAPEITQIVEVREEKEKFHRLLEL 794

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L + D     +IF ++++   +L   L ++G+   +IHG  DQ  R   + +FK G 
Sbjct: 795 LGELYNTDEDARTLIFVDRQEKADDLLKDLMRKGYPCMSIHGGKDQVDRDSTIDDFKAGV 854

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + +M+A+ +AARGLD+  +  V NFD PN  E+Y+HR GRTGRAG  G A T + +E  +
Sbjct: 855 VPIMIATSVAARGLDVKQLKLVVNFDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQEQ 914

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK-KNYS 414
           +   I K +E+    +   L+ +    +          +  +   ++S+GF  +  + + 
Sbjct: 915 YSVGIAKALEQSGQEVPDRLNEMRKSYKD---------KVKSGAKKESSGFRGKGLERFD 965

Query: 415 SQKSHIPLKE 424
           +++     +E
Sbjct: 966 AEREATKARE 975


>gi|254428748|ref|ZP_05042455.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
 gi|196194917|gb|EDX89876.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
          Length = 450

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 195/369 (52%), Gaps = 1/369 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L  +++ A+ +     PTP+Q   IP  L+  D+  +A+TG+GKTA+F+LPML 
Sbjct: 3   SFADLNLHERLIKALGELEITTPTPVQTAAIPAALEGRDLRVVARTGSGKTAAFLLPMLH 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +        R LIL PTRELA Q     E  G+   +   LL GG  F+ Q  K+ +
Sbjct: 63  QLLQYSRPRTDTRALILLPTRELAQQTLKQVEALGRYTFIKAELLTGGEDFKVQAAKMRK 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             ++LI TPGR+++H + G LL+ ++E+LV+DE+DRMLDMGF   +  + +     RQTL
Sbjct: 123 NPEILIGTPGRLIEHLDAGNLLLQDLEMLVLDESDRMLDMGFNDDVLRLAAECRAERQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T      +           +   S              A   K    L Q L +
Sbjct: 183 LFSAT-TGGNAMENMISSVLRDPKSLVLDSVRDLNESVSQQIITADDVKHKERLVQWLLA 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +T +  ++F N ++    L   L      V  +HG  DQ+ R   +   K G ++++VA
Sbjct: 242 NETYEKAVVFTNTREQADRLGGVLVASNLKVFVLHGEKDQKDRKLAMDRLKAGAVKVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ + ++  V NFD+P   + Y+HRIGRTGR G  G A +L+A  +   +  I+
Sbjct: 302 TDVAARGIHVDNLDLVINFDMPRSGDEYVHRIGRTGRVGGEGTAISLIAAHEWNLMAGIQ 361

Query: 362 KLIEKKVDW 370
           + + +  ++
Sbjct: 362 RYLRQNFEY 370


>gi|145629971|ref|ZP_01785753.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|144984252|gb|EDJ91675.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
          Length = 415

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 195/379 (51%), Gaps = 4/379 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 71  LLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQAI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P  + 
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVICLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L    + T   +     F       E        +T        +   ++    L   L
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMND-PEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTL 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G + ++
Sbjct: 250 MEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGNLDIL 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ A
Sbjct: 310 VATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPA 369

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+ I   +     +  +L
Sbjct: 370 IEEYIGHSIPVSQYETEAL 388


>gi|327479422|gb|AEA82732.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 4166]
          Length = 441

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 153/368 (41%), Positives = 224/368 (60%), Gaps = 5/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  +    Y KPTP+Q + IP VL+  D+   AQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIDPLLRTLETLDYRKPTPVQAEAIPAVLKGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L    A+V     R L+L PTRELA QV ++F  YG+N  L    + GG+    Q   
Sbjct: 61  QRLTMEGAKVASNSVRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD + +  +    ++ LV+DEADRMLD+GF   +  + S +P  R
Sbjct: 121 LRKGIDVLVATPGRLLDLYRQNAVGFAQLQALVLDEADRMLDLGFAEELDALFSALPKKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT ++ +++++   L++P  +EV+  ++ A+T+            K+ + L   
Sbjct: 181 QTLLFSATFSEPIRQMARELLRDPLSVEVSPRNAAAKTV---KQWLVPVDKKRKSELFLH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L ++      ++F   +K V  L   L+ QG +  AIHG+  Q SR++ L  FK G +Q+
Sbjct: 238 LLAERRWGQVLVFVKTRKGVDQLVDELQAQGIASDAIHGDKPQASRLRALERFKAGEVQV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V NFD+P  AE+Y+HRIGRTGRAG  G+A +LVA +++  + 
Sbjct: 298 LVATDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGASGEAISLVAADEVDQLA 357

Query: 359 AIEKLIEK 366
           AIE LI +
Sbjct: 358 AIETLINQ 365


>gi|241888805|ref|ZP_04776111.1| ATP-dependent RNA helicase DeaD [Gemella haemolysans ATCC 10379]
 gi|241864481|gb|EER68857.1| ATP-dependent RNA helicase DeaD [Gemella haemolysans ATCC 10379]
          Length = 486

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 134/391 (34%), Positives = 215/391 (54%), Gaps = 13/391 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+S + V ++ +  ++ PT IQ +TIP VL   D+   AQTG+GKT +F +P++ 
Sbjct: 3   TFEELGVSQETVQSLTNMNFISPTGIQTETIPYVLSGVDILAQAQTGSGKTGAFGIPLVD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +     R    ++LIL PTRELA QV +      +   L V+++ GG   E Q + L++
Sbjct: 63  TVR----RNDQLQSLILAPTRELAQQVGEQLRLMSRAKGLKVSIVFGGTSIERQIQDLKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++DH NR  + +  +  LV+DEAD ML+MGFI  ++ I S +    QTL
Sbjct: 119 RPQIIVGTPGRVIDHINRRTIKLETLTHLVLDEADEMLNMGFIEDVRFILSKITSRHQTL 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   + ++S+ F+++ K I      S  +               +          
Sbjct: 179 LFSATMPKTIMELSKEFMKDYKLI---KTMSDEDLKPDITEYATIARENEKLETLVGFLD 235

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K+ V  L  +L  +G+    +HG+I Q  R++IL  FK  ++Q++VA
Sbjct: 236 VQNPNLAIVFGRTKRRVDELASALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQILVA 295

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI DV HV+NFD+P   E+Y HRIGRTGRAG+ G A T +   ++ ++  IE
Sbjct: 296 TDVAARGIDISDVTHVYNFDIPQDVESYTHRIGRTGRAGKSGVAITFLNPVEMPYLKDIE 355

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
               +++  L          L+++  ++HN 
Sbjct: 356 NSRGERMKMLRPY------SLDEVKKSRHNR 380


>gi|196000560|ref|XP_002110148.1| hypothetical protein TRIADDRAFT_21567 [Trichoplax adhaerens]
 gi|190588272|gb|EDV28314.1| hypothetical protein TRIADDRAFT_21567 [Trichoplax adhaerens]
          Length = 424

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 130/399 (32%), Positives = 208/399 (52%), Gaps = 7/399 (1%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           GL   +  A     + +PT IQ + IP+ L   D+ G+A+TG+GKTA+FVLP+L  L   
Sbjct: 1   GLMEPLCQACDRLQWKQPTKIQCEAIPVALTGKDIIGLAETGSGKTAAFVLPILQALLDK 60

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ-NKKLERGADV 125
             R+     LIL PTRELA Q+++  E  G +  +  A++IGGI    Q     ++   +
Sbjct: 61  PQRLFA---LILTPTRELAFQISEQIEALGSSIGVQCAVIIGGIDMMTQSIMLAKKPHII 117

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           +           N     +  ++ LV+DEADR+L+M F   +  I S++P  R+T LFSA
Sbjct: 118 IGTPGRLADHLANTKGFSLRPLKYLVMDEADRILNMDFEAEVDKILSVLPKERRTYLFSA 177

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           TMT +++K+    +Q+P +IEV+T  +T E ++          +K        + ++   
Sbjct: 178 TMTKKVKKLQRASVQDPVKIEVSTKYTTVEKLQQ---TYIFVPAKYKDCYLVSILNELAG 234

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
            + ++FC    N   +   L   GF+   +HG + Q  R+  L  FK     ++VA+D+A
Sbjct: 235 NSFMVFCATCINTQRIGLMLRNLGFNAIPLHGQMSQSKRLGALHKFKSKESSILVATDVA 294

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLDIP V  V NFD P+ +++YIHR+GRT RAGR G++   V + D++    IE+LI 
Sbjct: 295 SRGLDIPHVDIVINFDAPSHSKDYIHRVGRTARAGRSGRSIIFVTQYDVELFQRIEQLIA 354

Query: 366 KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           KK+         +   +E++  AQ     +      K  
Sbjct: 355 KKLPEYPTVEEEVMLLMERVAEAQRYAKMELQETMNKKR 393


>gi|91762707|ref|ZP_01264672.1| probable ATP-dependent RNA helicase [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718509|gb|EAS85159.1| probable ATP-dependent RNA helicase [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 582

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 136/428 (31%), Positives = 216/428 (50%), Gaps = 18/428 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L +   +  ++    + KPTPIQ   IP+ L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFKLLKIEDSLKNSLEKMKFTKPTPIQAMAIPVALEGKDILGTAQTGTGKTLAFSIPLIN 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   +    +      E        +A          N+  ALLIGG   + Q ++L  
Sbjct: 63  KLILDKNAFALVMCPTRE---LATQVMAAIKSIISDKINIKTALLIGGEAMQKQLRQLGN 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + +++ TPGRI DH  R  L ++  + LV+DE DRMLDMGF P I+ I   VP   QTL
Sbjct: 120 RSRIIVGTPGRINDHLKRKSLNLSATKYLVLDETDRMLDMGFTPQIELILKFVPKDHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   + ++SE +L  P+RI   + S     I+   +  +    K+    Q + Q 
Sbjct: 180 LFSATLPQNIVRISERYLNKPQRISTGSTSVPIAKIKQETLQVF----KENKYDQLVDQF 235

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + ++F   K+    +   L+++G S  AIHG++ Q  R +++++F++G  ++++A
Sbjct: 236 IARKGSILVFVKTKRGADKMVKRLKEEGHSADAIHGDLRQSKRDRVITSFRKGLKRILIA 295

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP + HV NFD+P   E+Y+HRIGRT RAG  G A T +  +D    + I 
Sbjct: 296 TDVAARGLDIPLIQHVINFDLPQVPEDYVHRIGRTARAGTEGSALTFLTPDDRSMWNEIS 355

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           KLI+               P  +         ++      K   F   KK++   +    
Sbjct: 356 KLIDPNF-----------KPAPRGARGDSRGGKRGKAPYNKKRKFRDEKKSFGKGRPDRS 404

Query: 422 LKESEKIS 429
            ++ EK S
Sbjct: 405 SRDGEKKS 412


>gi|322806278|emb|CBZ03846.1| ATP-dependent RNA helicase BA2475 [Clostridium botulinum H04402
           065]
          Length = 376

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 143/370 (38%), Positives = 213/370 (57%), Gaps = 6/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS  ++  +     ++PTPIQ ++I L+   +DV   AQTGTGKT +F+LPM 
Sbjct: 2   IKFEELGLSDSIIDVLKKQRIIEPTPIQEESIMLIKSGNDVIAEAQTGTGKTLAFLLPMF 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      +   + LI+ PTRELA Q+ +   K  +  +L +    GG    +Q KKL+
Sbjct: 62  ENISP---DIDAIQGLIITPTRELAIQITEEAMKLKEAKDLNILATYGGKDIGSQIKKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH NR  L   +++ LV+DEAD ML MGF   +++I    P  RQT
Sbjct: 119 NNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++   +++PK I +     T + I            ++       + 
Sbjct: 179 LCFSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNI---KQVLIETTDRRKQEDLCKIL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     IIFC  K+ V  L  +L K+G++   +HG+I Q  R +I+ +FK   IQ ++
Sbjct: 236 DEENPFMAIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLI 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HVFN+D+P  AE+YIHRIGRTGRAG  G  F  VA +D + +  I
Sbjct: 296 ATDVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLGMI 355

Query: 361 EKLIEKKVDW 370
           EK I+ K+  
Sbjct: 356 EKEIKFKIPR 365


>gi|307564611|ref|ZP_07627147.1| putative ATP-dependent RNA helicase DeaD [Prevotella amnii CRIS
           21A-A]
 gi|307346681|gb|EFN91982.1| putative ATP-dependent RNA helicase DeaD [Prevotella amnii CRIS
           21A-A]
          Length = 613

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 141/385 (36%), Positives = 224/385 (58%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F +LG+S  +  A+ + G+  P P+Q + IP +L    DV  +AQTGTGKTA+F LP+L
Sbjct: 3   TFEELGVSEDIRKAIEEQGFEYPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKL 119
             ++  R   +     +L PTREL  Q+AD+ + + K      +A + GG   EAQ K+L
Sbjct: 63  QRIDTSRKETQAI---VLSPTRELCLQIADDLKDFSKYIPHLHIAAVYGGTSIEAQIKEL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG  +++ TPGR++D  +RGK  + N+  +V+DEAD ML+MGF   I  I S VP  R 
Sbjct: 120 KRGVQIIVATPGRLIDLMHRGKAKLENVCNIVLDEADEMLNMGFQDSITEILSGVPEDRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ ++++V++ +L + K I V + +  AE++ H     Y   +K   L  + L
Sbjct: 180 TLLFSATMSKDVERVAKGYLHDYKEIVVGSRNEGAESVNH---IYYMVNAKDKYLALKRL 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    I+FC  K     +   L K G++  A+HG++ Q+ R   +  F+    Q++
Sbjct: 237 VDFYPKIYAIVFCRTKLETQEVADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHLTQIL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ ++ HV N+ +P+  ENY HR GRTGRAG+ G +  ++   +   +  
Sbjct: 297 VATDVAARGLDVTELTHVINYGLPDDIENYTHRSGRTGRAGKKGTSIAIIHCREKYKVRN 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IE++I K  ++++G L S     +K
Sbjct: 357 IERVIGK--EFVDGTLPSAEEICKK 379


>gi|198425852|ref|XP_002130131.1| PREDICTED: similar to p68 RNA helicase isoform 1 [Ciona
           intestinalis]
 gi|198425854|ref|XP_002130146.1| PREDICTED: similar to p68 RNA helicase isoform 2 [Ciona
           intestinalis]
          Length = 585

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 203/379 (53%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +      +   +L  G+  PTPIQ    P  L   D+ GIAQTG+GKT SF+LP +  
Sbjct: 116 FHEASFPDYINNQLLSNGFKAPTPIQAIGWPHALGGQDLVGIAQTGSGKTLSFILPAMIH 175

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV      YG+  ++    + GG     Q + LE
Sbjct: 176 INAQPYLERGDGPIALVLCPTRELAQQVQAVANDYGQLCHIRNTCVYGGASKAPQIRDLE 235

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D     K  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 236 RGCEIVIATPGRLIDFLEARKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQT 295

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+QK++ +FL++   I++ + + +A       V    +  K   L++ + +
Sbjct: 296 LMWSATWPKEVQKLANDFLRDNVHIQIGSVNISANHNILQIVDVCTEDEKSEKLMRLMEE 355

Query: 241 SQDT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIF   K+    L  ++ + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 356 IMGEAENKTIIFTETKRKCDILTRNMRRDGWPAMCIHGDKSQPERDWVLNEFRTGKSPIL 415

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLD+ D+  V NFD PN+ E+YIHRIGRT RA + G A+T   + + K    
Sbjct: 416 VATDVASRGLDVSDIKFVINFDFPNQCEDYIHRIGRTARANQTGTAYTFFTQANAKQCKD 475

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + +++++    +N  L  L
Sbjct: 476 LIEILKEAKQQINPRLMEL 494


>gi|110638284|ref|YP_678493.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110280965|gb|ABG59151.1| possible ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 388

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 136/370 (36%), Positives = 208/370 (56%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLSP ++ A+    Y  P PIQ + IP +L+  D+ GIAQTG+GKTASFVLP+L
Sbjct: 9   MSFATLGLSPAILKALEKQFYNAPYPIQEQAIPAILKGKDILGIAQTGSGKTASFVLPIL 68

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV-ALLIGGIPFEAQNKK 118
            +L+     + R    L+L PTRELA QV   F+ +       + +L + G         
Sbjct: 69  QMLQTKPLGKNRHINALVLVPTRELAVQVGQVFQAFSNALPNKIKSLAVYGGVSINPQMI 128

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +G ++LI TPGR+LD  +   + ++++E+LV+DEAD+ML++GF   + NI  L+P  R
Sbjct: 129 QLQGVEILIATPGRLLDLVDSKAVYLSDVEVLVLDEADKMLNLGFKEEMANIFKLLPQKR 188

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT+  ++  ++E  L +P +I      +  + I+      YA    +   L + 
Sbjct: 189 QNLLFSATLGKDVDTITEFLLHDPVKI---EIIAEEQNIDLIQQIAYAVEDARKGPLLRY 245

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +  M   +IF +       +   L+       A+H    Q +R + L  FK G I +
Sbjct: 246 LIKEQKMNQVLIFTSSVHRADAVVEKLKANNILAAALHSKKSQGARTEALKQFKAGNIHV 305

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DL +RG+DIP +  V N+++P   ++YIHRIGRTGRA   G A  L+++E+  H  
Sbjct: 306 LVATDLMSRGIDIPFLPFVINYELPRSPKDYIHRIGRTGRAEASGVAINLISEEETHHFS 365

Query: 359 AIEKLIEKKV 368
            I+K + KKV
Sbjct: 366 VIQKKMGKKV 375


>gi|163746467|ref|ZP_02153825.1| putative ATP-dependent RNA helicase, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161380352|gb|EDQ04763.1| putative ATP-dependent RNA helicase, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 438

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 152/374 (40%), Positives = 226/374 (60%), Gaps = 5/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           DF  +GL  K+V  + + G   PTPIQ + IP  +   DV G+AQTGTGKTA+F +P+  
Sbjct: 3   DFDMMGLPKKLVARLNEMGLKDPTPIQRQAIPQAMNGRDVMGLAQTGTGKTAAFGVPLLA 62

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +  +GR   R  R L+L PTRELA Q+A N   Y +   + VA+++GG     Q K+L
Sbjct: 63  QMMELEGRPEPRSVRGLVLAPTRELAQQIAVNLRGYAEGTQIKVAMVVGGQSINTQIKRL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+LI TPGR+LD  +R  + ++    LV+DEAD+MLDMGFI  ++ I++L+P  RQ
Sbjct: 123 ERGVDLLIATPGRLLDLLDRRAVKLDTTTFLVLDEADQMLDMGFIHDLRKISNLIPKERQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   + +++ ++L +P RIEV+ P   A+ +             +     + L
Sbjct: 183 TMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKVTQEVHFIAKAEKTEL---LKEL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  ++F   K     L  +L K GF   +IHGN  Q  R + ++ FK G I ++
Sbjct: 240 LAKHKGERALVFGRTKHGSEKLMKTLVKAGFDAASIHGNKSQGQRDRAIAGFKGGDITVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIPDV HV+NF++PN  +NY+HRIGRT RAG+ G A    A +++  + A
Sbjct: 300 VATDVAARGLDIPDVKHVYNFELPNVPDNYVHRIGRTARAGKDGAAVAFCAPDEMGELKA 359

Query: 360 IEKLIEKKVDWLNG 373
           I+K +   +   +G
Sbjct: 360 IQKTMGISIPVASG 373


>gi|268563805|ref|XP_002638939.1| Hypothetical protein CBG22166 [Caenorhabditis briggsae]
 gi|187022048|emb|CAP38818.1| hypothetical protein CBG_22166 [Caenorhabditis briggsae AF16]
          Length = 753

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 151/480 (31%), Positives = 236/480 (49%), Gaps = 44/480 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  + LS +++ A   AGY  PTPIQ   IP+ L   D+C  A TGTGKTA+FVLP+L
Sbjct: 143 VSFEQMNLSRQILKACAGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPIL 202

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +          R L+L PTRELA QV   F K      L V L  GG+  +AQ   L 
Sbjct: 203 ERMIYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALR 262

Query: 121 RGADVLICTPGRILDHFNRGKLLM-----------------------NNIEILVIDEADR 157
            G DV++ TPGR++DH +                              N+++LV+DEADR
Sbjct: 263 SGPDVVVATPGRLIDHLHNSPSFNLASIEVFLSLEKEKFRNSEIQESKNLKVLVLDEADR 322

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           ML+  F   +  +  L    RQTLLFSATMT+E+ +++   L+ P +I +N  + TA  +
Sbjct: 323 MLEEAFRDQMNELIRLCAENRQTLLFSATMTEEIDELASMSLKKPVKIFINENTDTALKL 382

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
              F+   A        +   L ++    N I+F   KK+   +   L   G  V  +  
Sbjct: 383 RQEFIRIRAGRETDRESMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQS 442

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q  R++ LS FK+G I ++V++DLA+RGLDI  V  V N ++P   + YIHR+GRT 
Sbjct: 443 SLTQGQRIESLSKFKKGEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTA 502

Query: 338 RAGRHGKAFTLVAKEDIKHIDAI----------EKL--------IEKKVDWLNGDLSSLN 379
           RAG+ G++ +LV +E+ K +  I          ++L          +++D L   +  ++
Sbjct: 503 RAGKAGRSISLVGEEERKLLKEIVNSNADRTLKQRLVAPEVVEAYRRRIDELEETIQQID 562

Query: 380 PP---LEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQ 436
                 +++ IA+ + A+    +     G   ++K     K     K+ ++  K Q  I+
Sbjct: 563 EEDRAEKELRIAEASMAKTQQALEAVENGGAVQEKRVWMMKESQVEKQRKRDEKRQMKIE 622


>gi|33603888|ref|NP_891448.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
 gi|33568864|emb|CAE35278.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
          Length = 481

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 152/361 (42%), Positives = 219/361 (60%), Gaps = 6/361 (1%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA---R 69
           + A+ D GY  PTPIQ + IPLVLQ  D+   AQTGTGKTA F LP+L  L + +    +
Sbjct: 1   MRAIADTGYTAPTPIQAQAIPLVLQGGDLLAAAQTGTGKTAGFTLPILHRLMQTKPAARK 60

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
              PR LIL PTREL AQVA++ + YGK  +L+  ++ GG+    Q   L++  D+L+ T
Sbjct: 61  PGRPRCLILTPTRELTAQVAESVQTYGKYASLSSMVMFGGVNINPQISALKKPLDILVAT 120

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGR+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ + +L+P  RQ LLFSAT +D
Sbjct: 121 PGRLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQRQNLLFSATFSD 180

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
           E++ ++   L +P  + V   ++  E +          + +           +      +
Sbjct: 181 EIRSLARGVLNDPGEVSVTPRNTATELVTQTVHLVEQHHKRDLVSHL---IRESGWHQVL 237

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           +F   K     L   L K G S  AIHGN  Q +R + LS FK+G++ ++VA+D+AARGL
Sbjct: 238 VFTRTKHGANRLAEKLVKDGLSAAAIHGNKSQSARTRALSGFKDGSVAVLVATDIAARGL 297

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           DI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV   +IK + AIE+LI+K ++
Sbjct: 298 DIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDDSEIKLLKAIERLIKKPIE 357

Query: 370 W 370
            
Sbjct: 358 R 358


>gi|11499835|ref|NP_071079.1| DEAD-box ATP dependent DNA helicase [Archaeoglobus fulgidus DSM
           4304]
 gi|2648271|gb|AAB89003.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Archaeoglobus
           fulgidus DSM 4304]
          Length = 368

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 131/363 (36%), Positives = 206/363 (56%), Gaps = 9/363 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPM 59
           ++F DLG+S   + AV   G+ KPT IQ + IP   +   D+ G AQTG+GKTA+F LP+
Sbjct: 7   VEFEDLGISENGLNAVRRKGFEKPTEIQREIIPRFFEGEKDMVGQAQTGSGKTAAFALPI 66

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L ++++   R +  + +++ PTRELA QV D  E       + V  + GG P   Q ++L
Sbjct: 67  LDLVDE---RSKDVQAIVITPTRELALQVKDEIESLRGGKKVHVLAVYGGQPIFPQIERL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  +++ TPGR++DH  R  L +  +   V+DEADRMLDMGFI  I+ I       R+
Sbjct: 124 RKGVQIVVGTPGRVIDHLERRTLSLEKVRFFVLDEADRMLDMGFIDDIERILRHAGAERR 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  E+ +++  ++++ + + V++  +       C      +  +    +    
Sbjct: 184 VLMFSATMPPEVLRLARRYMRDYEVVRVHSKITPENVEHRCLKVNPEKRFEHLCRILDEN 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GI+FC  KK    L   L  +G+   A++G+I Q  R  IL NF++G  +++
Sbjct: 244 NFY-----GIVFCQTKKETRELGRRLRARGYKADALNGDIPQHKRESILRNFRKGYTRVL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ D+ HV N+ +P   E YIHR GRTGR G+ GKA T VA  + + +  
Sbjct: 299 VATDVAARGIDVKDLTHVVNYSIPQDPEAYIHRTGRTGREGKRGKAITFVAPWESRKLKI 358

Query: 360 IEK 362
           IE+
Sbjct: 359 IER 361


>gi|87120846|ref|ZP_01076739.1| ATP-dependent RNA helicase [Marinomonas sp. MED121]
 gi|86164074|gb|EAQ65346.1| ATP-dependent RNA helicase [Marinomonas sp. MED121]
          Length = 443

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 155/446 (34%), Positives = 227/446 (50%), Gaps = 17/446 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M FA LGLS  ++ AV   GY +PT IQ + IP +L   ++   +QTGTGKTASFVLP+ 
Sbjct: 1   MSFAKLGLSTPILNAVAKLGYTQPTSIQKQAIPAILLDRNLLAASQTGTGKTASFVLPLL 60

Query: 60  ------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                      + + R +  R L+L PTRELA QV ++  +YGK  + T   L GG+   
Sbjct: 61  EKLFRNRRYNGQTKVRGKRVRILVLTPTRELATQVEESIAEYGKELDFTSMALYGGVDEV 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q ++L  G D L+ TPGR++D  ++  L  + +E LV+DEADRMLDMGFI  I NI   
Sbjct: 121 PQKERLIEGVDFLVATPGRLVDMVHQRALHFDEVETLVLDEADRMLDMGFIDDIYNIIDR 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN-------TPSSTAETIEHCFVATYA 226
           +P  RQ LLFSAT+ D ++ +S  F       +           S    +          
Sbjct: 181 LPDDRQNLLFSATLNDHVRNLSTTFSGVGMENKEFYDDLLEINISPKETSASSIDQCLIT 240

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
                 + L   L  +      +IF  +K     L   LEK+G     IHG+  Q  R K
Sbjct: 241 VDKDTKSALLSHLIKEQEWDQALIFIEKKHGAAKLVSQLEKRGIKADCIHGDRSQSMREK 300

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
           +L+ FK G ++ +VA+ +AARG+DI D+  V N+D+P + E YIHRIGRTGRAG  G+A 
Sbjct: 301 VLAEFKSGELKYLVATGVAARGIDIGDLTRVVNYDLPFKPEEYIHRIGRTGRAGAAGEAV 360

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
           + VA  D K++ AIE  +   +     +     P  + + ++  N+ RK N    +    
Sbjct: 361 SFVAMGDFKNLCAIESRLGHIIKRKEIE---GFPVRKTVPVSILNYVRKANRPDAEGKQA 417

Query: 407 DRRKKNYSSQKSHIPLKESEKISKLQ 432
             +     S K+     E ++  + +
Sbjct: 418 PSKDTQPKSNKTANTKPEKKRAPRHK 443


>gi|325522216|gb|EGD00856.1| DEAD/DEAH box helicase [Burkholderia sp. TJI49]
          Length = 480

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 162/473 (34%), Positives = 244/473 (51%), Gaps = 16/473 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  + D  Y  PTP+Q K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIGPLLRNLQDLNYQTPTPVQAKAIPAVLGGQDVMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +    V   R    +L PTRELA QV  +F  YGK  +L      GG+    Q  K
Sbjct: 61  QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT TD+++ ++ N L+ P  I V+ P++TA  I    V    +   +  +    
Sbjct: 181 QTLLFSATFTDDIRAMAANILRAPVNISVSPPNATASKIRQWVVTVDKRNKPELFMHL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +++   + ++F   +  V  L   L++ G++V  IHG+  Q +R++ L  FK+  + +
Sbjct: 239 -VAENNWDHALVFVKTRSGVDYLAARLDEAGYAVDTIHGDKPQPARLRALERFKQREVSM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEKKV--DWLNGDLSSLNPP--------LEKIDIAQHNHARKNNPIPQKSTGFDR 408
           AIE LI + +  +   G  +    P        ++K    +     +  P   K++G   
Sbjct: 358 AIETLIRQTLPREEEPGFEAEHRVPQTSATGQIVKKPKKPKKPKLPQAAPAAPKASGKKA 417

Query: 409 RKKNYSSQKSHIPLKE-SEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
                +      P     + +      +Q+  +   G     PA    K  GK
Sbjct: 418 HPHGGNGDNKRKPAAAIPDVLKGSPFSVQKPRSKPAGKPSGKPAAGSRKPAGK 470


>gi|163751114|ref|ZP_02158344.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161329070|gb|EDQ00142.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 445

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 121/375 (32%), Positives = 182/375 (48%), Gaps = 1/375 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F D  L  +++  +   G   PT IQ + IP+ L   D+   ++TG+GKT +F+LP M
Sbjct: 1   MQFTDFSLDKRLLNTLDHMGIETPTEIQQQAIPVGLSGKDLMASSKTGSGKTLAFLLPAM 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I+       R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRIISTRALSKRDPRVLILLPTRELANQVYGQLRLLVANTQYKAMKILGGENFNDQAKLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH  +  L +N +E+L++DEADRMLD+GF   ++ I       R+
Sbjct: 121 ARDPHFVVATPGRLADHLAQHHLHLNGLELLILDEADRMLDLGFAEQLKAINKAADHKRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D     +           V+  +   E  +       A +      L   +
Sbjct: 181 QTLMFSATLDHGLISNIAAELLKSPEHVDIGAGNIENQDITQRIYLADHLDHKEALLDSI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +T K  IIF   + +   L   L   G    ++ GN+ Q +R +I+  F  G  +++
Sbjct: 241 LNNETHKQIIIFTATRDDTDRLATKLAASGHKTASLSGNLKQSARNQIMDQFSRGLQKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A + V  +D      
Sbjct: 301 VTTDIASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISFVGPKDWLSFKQ 360

Query: 360 IEKLIEKKVDWLNGD 374
           I+  + K  ++   D
Sbjct: 361 IQVFLRKTFEFTVID 375


>gi|156095474|ref|XP_001613772.1| pre-mRNA splicing factor RNA helicase PRP28 [Plasmodium vivax
           SaI-1]
 gi|148802646|gb|EDL44045.1| pre-mRNA splicing factor RNA helicase PRP28, putative [Plasmodium
           vivax]
          Length = 1006

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 123/419 (29%), Positives = 198/419 (47%), Gaps = 27/419 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  LS  ++ A+  A Y KPTPIQ++ IP+ L+  D+ GIA+TG+GKTA+FVLPML  
Sbjct: 583 WEESNLSSDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLAY 642

Query: 63  LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +++            P  LI+ P+RELA Q+ D   K+    +     ++GG   EAQ  
Sbjct: 643 VKQLPPLTYETSQDGPYALIIAPSRELAIQIFDETNKFASYCSCRTVAVVGGRNAEAQAF 702

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT------ 171
           +L +G +++I TPGRI D   +   ++N    +++DEADRM+DMGF   +  I       
Sbjct: 703 ELRKGVEIIIGTPGRIHDCLEKAYTVLNQCNYVILDEADRMMDMGFEDSVHFILDKIPTT 762

Query: 172 --------------SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
                          +     +    +   +  +    E   +   R             
Sbjct: 763 NLKSEDDALALQEEMMAKAGHRLYRLTQMFSATMPPAVERLSRKYLRAPAYISIGDPGAG 822

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
           +          ++     +     ++     I+F NQKK    +  S+ K  F   A+HG
Sbjct: 823 KRSIEQKLEFTTEGKKKQKLQEILEEYEAPIIVFVNQKKVADIIAKSISKMKFRAVALHG 882

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
              Q  R + L++FK G   ++VA+D+A RG+D+  V  V NFD+P   E+Y HRIGRTG
Sbjct: 883 GKAQELREQTLNSFKNGDFDILVATDVAGRGIDVQGVKLVINFDMPKDIESYTHRIGRTG 942

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
           RAG  G A + V ++D      +++ +    + +  +L+  N P  K+      HA K 
Sbjct: 943 RAGMKGMAISFVTEQDSHLFYDLKQFLISSNNIVPMELA--NNPASKVKPGSVLHAPKK 999


>gi|149183244|ref|ZP_01861688.1| ATP-dependent RNA helicase [Bacillus sp. SG-1]
 gi|148849040|gb|EDL63246.1| ATP-dependent RNA helicase [Bacillus sp. SG-1]
          Length = 470

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 145/359 (40%), Positives = 215/359 (59%), Gaps = 6/359 (1%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
            G+ + TPIQ   IPL L+  DV G AQTGTGKT +F +PM+  ++     V+    LI+
Sbjct: 1   MGFEEATPIQAGAIPLALEGKDVIGQAQTGTGKTTAFGIPMVEKIDVKNPNVQG---LII 57

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QV++   K G++  + V  + GG   + Q + +++   +++ TPGR+LDH N
Sbjct: 58  APTRELAIQVSEELYKIGQDKRVNVLAVYGGQDIQRQIRAMKKNPHIIVGTPGRMLDHIN 117

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           R  L + N+  LV+DEAD ML+MGFI  I++I   VP  RQTLLFSATM   ++K++ NF
Sbjct: 118 RRTLKLGNVSTLVLDEADEMLNMGFIEDIESILKNVPDNRQTLLFSATMPGPIRKIANNF 177

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           + +P+ + V +   T   IE         + K+   +   L    + +  IIF   K+ V
Sbjct: 178 MTDPETVSVKSKEMTVPHIEQ---YFVKAHEKEKFDVLSRLLDVQSPELAIIFGRTKRRV 234

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             L  +L  +G+S   IHG++ Q  RM +L  FKEG I ++VA+D+AARGLDI  V HV+
Sbjct: 235 DELARALTLRGYSAEGIHGDLSQAKRMTVLRQFKEGRIDVLVATDVAARGLDISGVTHVY 294

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
           NFD+P   E+Y+HRIGRTGRAG+ G A T V   ++ ++  +EK  +K +  +    S+
Sbjct: 295 NFDIPQDPESYVHRIGRTGRAGKEGMAMTFVTPREMGYLRIVEKTTKKSMTQMKPPTSN 353


>gi|115637407|ref|XP_796437.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41,
           partial [Strongylocentrotus purpuratus]
 gi|115949877|ref|XP_001190893.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41,
           partial [Strongylocentrotus purpuratus]
          Length = 603

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 124/394 (31%), Positives = 195/394 (49%), Gaps = 16/394 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G  KPTPIQI+ +P++L+  D+ GIA TG+GKT  F LP++  
Sbjct: 164 FKEMKFPKSIIYGLKKKGITKPTPIQIQGLPVILEGRDMIGIAFTGSGKTLVFSLPIVMF 223

Query: 63  -----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGIP 111
                      +   P  LI+ P+RELA Q  D    + K             L IGG+ 
Sbjct: 224 ALEQEKRMPFIKNEGPYGLIICPSRELARQTHDGIMHFIKCLEADNQPTLRSMLCIGGVS 283

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q   +  G  +++ TPGR++D  N+    ++    L +DEADRM+D+GF   I+ I 
Sbjct: 284 VKEQMDAVRSGVHIVVATPGRLIDMLNKKCFTLSVCRYLCLDEADRMIDLGFEEDIRTIL 343

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +     RQTLLFSATM  ++Q     F ++     V      A       +       ++
Sbjct: 344 TYFKSQRQTLLFSATMPKKIQN----FAKSALVRPVTVNVGRAGAASLDVIQEVEYVKQE 399

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             ++  L   Q      +IF  +K +V ++   L  +G    AIHG  DQ  R K +  F
Sbjct: 400 AKMVYLLECLQKAPPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEERTKSIEQF 459

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +     ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + K
Sbjct: 460 RAREKDVLVATDVASKGLDFPDIQHVINYDMPEDIENYVHRIGRTGRCGKTGIATTFINK 519

Query: 352 E-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
             D   +  ++ L+ +    L   L ++    E+
Sbjct: 520 ACDESVLRDLKHLLIEAKQKLPPVLEAIEDENEE 553


>gi|300778148|ref|ZP_07088006.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
 gi|300503658|gb|EFK34798.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
          Length = 380

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 130/370 (35%), Positives = 198/370 (53%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGLS  ++ +V   GY+KP PIQ + +P++LQ  D+ GIAQTG+GKTA FV+P+ 
Sbjct: 1   MSFESLGLSHNIIRSVNKLGYLKPFPIQEQAVPVILQGKDLMGIAQTGSGKTACFVMPIL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF-EAQNKK 118
             +      + R  + LIL PTRELA Q+ + F+ +  N    +  +            K
Sbjct: 61  EKLQNADVKKGRNIQVLILVPTRELAIQIDEVFKAFTGNLKREIRTMAVYGGVSINPQMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              G +VLI TPGR+LD  +   L ++ I  LVIDEAD+M  +GF   +  + +L+P  +
Sbjct: 121 GMFGVEVLIATPGRLLDLIDHNALSISGIRHLVIDEADKMFQLGFGEEMNKLFALMPVVK 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT LFSAT+ D++ ++ E    NP  IE+       E IE        +         + 
Sbjct: 181 QTTLFSATLNDKVAEMKEKLSINPVIIEIKKEEVEIENIEQLAYHVAPENK---GPFLRY 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +  ++  +IF +  ++  NL   L+K      AIH    Q +R   L  FK    Q+
Sbjct: 238 LIKEKKVEKALIFVSSTRSADNLVEKLKKNKIKAVAIHSQKSQGARRNNLEEFKVNGAQI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DL  RG+ I  +  V N+++P    +YIHRIGRTGRA   G A +++  ++++H  
Sbjct: 298 LVATDLIGRGIHIESLPCVINYELPRSPLDYIHRIGRTGRANEKGTAISILTDDELQHFR 357

Query: 359 AIEKLIEKKV 368
            I+K + KKV
Sbjct: 358 VIQKKMGKKV 367


>gi|156083170|ref|XP_001609069.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
           containing protein [Babesia bovis T2Bo]
 gi|154796319|gb|EDO05501.1| DEAD/DEAH box helicase and  helicase conserved C-terminal domain
           containing protein [Babesia bovis]
          Length = 433

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 197/371 (53%), Gaps = 4/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+ P++  A    G+  PTPIQ+  IP  L   DV G+A TG+GKT +F +P+L 
Sbjct: 44  TFQSLGVCPELCKACQSMGWQAPTPIQMAAIPHALNGRDVIGLAVTGSGKTGAFTIPVLH 103

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+      +L P+REL  Q+A+ F     +  L V ++IGG+    Q   L +
Sbjct: 104 HLLEDVQRIYCV---VLAPSRELCEQIAEQFRALSSSIALQVCVIIGGVDMVHQASALAK 160

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ +PGR+ DH    K    + ++ LVIDEADR+L   F   +  I   +P  RQT
Sbjct: 161 RPHVIVASPGRLADHVENTKGFSLSTVKKLVIDEADRLLSQDFDEELDKIIHAMPTERQT 220

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT +L K+ +  L++P  ++V+   STAE ++  F+    +Y            
Sbjct: 221 FLFSATMTKKLSKLQKMALKDPISVQVDDKYSTAENLDQRFLLVPQKYKYTYLAALLWYY 280

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  T       C+  +        L+        +HG + Q  R + L  FK G++ ++V
Sbjct: 281 ATRTAIVFCKTCDGAQRCAAYLKGLKFTTICKVCLHGKMTQADRSRALQIFKTGSVNILV 340

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+++  RGLD+P V  V NFD+P  +++YIHR+GRT RAGR G A T+V + D++    I
Sbjct: 341 ATEVGGRGLDLPMVELVINFDIPECSKDYIHRVGRTARAGRSGLALTVVTQYDVELFQRI 400

Query: 361 EKLIEKKVDWL 371
           E  + KK++  
Sbjct: 401 ELALNKKLEEF 411


>gi|167035770|ref|YP_001671001.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida GB-1]
 gi|166862258|gb|ABZ00666.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 443

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 146/374 (39%), Positives = 218/374 (58%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+FA LGL   ++  +    Y  PTP+Q K IP VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     +V     R L+L PTRELA QV +N  +Y +N  L+   + GG+    Q  +
Sbjct: 61  QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMR 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+L+ TPGR+LD F +  +  N ++ LV+DEADRMLD+GF   +Q++ + +P  R
Sbjct: 121 LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D+++ ++   L +P  IEV+  ++TA +++   V    +  +        
Sbjct: 181 QTLLFSATFSDQIRVLAGLALNDPLSIEVSPRNATATSVKQWLVPVDKKRKEDLFCHLLR 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            Q        ++F   +  V  L   L  +G +   IHG+  Q +R + L +FK   +Q+
Sbjct: 241 KQRW---TQVLVFAKTRNGVDQLVQRLLAEGVNADGIHGDRPQATRQRALDSFKAREVQV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  AE+Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLA 357

Query: 359 AIEKLIEKKVDWLN 372
           AIE L  + +    
Sbjct: 358 AIEVLTRQTLPRHE 371


>gi|157108214|ref|XP_001650127.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|65306807|gb|AAY41941.1| vasa-like protein [Aedes aegypti]
 gi|108879362|gb|EAT43587.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 638

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 119/420 (28%), Positives = 194/420 (46%), Gaps = 4/420 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL   ++  +  + Y KPTPIQ   IP+++ + D+   AQTG+GKTA+F+LPM+ 
Sbjct: 216 SFGDSGLRDYLLQNIRKSHYTKPTPIQKYAIPIIMDKRDLMACAQTGSGKTAAFLLPMIN 275

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P  +I+ PTRELA Q+ +   K+     L V +  GG     Q   +
Sbjct: 276 TLLNDNADMVPGNPFVVIIAPTRELALQIFNEARKFALGTVLKVCVAYGGTATRHQMDNI 335

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  +L+ TPGR+LD  ++  +    ++ +V+DEADRMLDMGF+P ++ + +      +
Sbjct: 336 QNGCHILVATPGRLLDFVDKQAVTFERVKFVVLDEADRMLDMGFMPSVEKMMNHETMRPK 395

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ-QL 238
               +   +       +          +                T  Q SK     + + 
Sbjct: 396 EERQTLMFSATFPAEIQELAGQFLNNYIFVAVGIVGGASTDVEQTIHQVSKFQKRKKLEE 455

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   D     ++F   K+N   L   L +  F   +IHG+  QR R + L +FK G + +
Sbjct: 456 LLEADDPTGTLVFVETKRNADYLASLLSETKFPTTSIHGDRLQREREEALRDFKSGKMFI 515

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHI 357
           ++A+ +AARGLDI +V HV N+D+P   ++Y+HRIGRTGR G  GKA +    E D    
Sbjct: 516 LIATSVAARGLDIKNVAHVVNYDLPKSIDDYVHRIGRTGRVGNKGKATSFYDMEADAAIA 575

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             + K++ +    +   L  L+              R         +  D + K    ++
Sbjct: 576 PDLVKILTQAGQQVPDFLEGLSTGGGSFGGGSQFGGRDIRSRDTGGSRVDAQPKQMEPEE 635


>gi|5059030|gb|AAD38876.1|AF110008_1 p68 RNA helicase [Molgula occulta]
          Length = 619

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 125/380 (32%), Positives = 202/380 (53%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    +   +   G+ +PTPIQ    P  +  HD  GIA+TG+GKT  F+LP + 
Sbjct: 150 QFQEAGFPDYIYGTLNXQGFSEPTPIQAIGWPNAMSGHDCVGIAKTGSGKTLGFILPAIV 209

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA QV     ++G + ++    + GG     Q + L
Sbjct: 210 HINAQPYLDPGDGPIVLVLCPTRELAQQVQQVAAEFGSSSHIKNTCVYGGASKGPQLRDL 269

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG +++I TPGR++D   + K  +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 270 ERGCEIVIATPGRLIDFLEQKKTNLRRCTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQ 329

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+ K++ +FL +   ++V +   +A       V       K   L++ + 
Sbjct: 330 TLMWSATWPKEVSKLASDFLGDFVHVQVGSTGLSANHNILQIVDVCQPMEKDEKLMRLME 389

Query: 240 QSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   ++    IIF   K+    L  ++ + G+    IHG+  Q  R  +L+ F+ G   +
Sbjct: 390 EIMGESENKTIIFTETKRRCDELTRTMRRDGWPAMCIHGDKSQPERDWVLNEFRSGRSPI 449

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RGLD+ DV  V N+D P++ E+Y+HRIGRT RA + G A+T    ++ K   
Sbjct: 450 LVATDVASRGLDVHDVKFVINYDFPSQCEDYVHRIGRTARAEQKGTAYTFFTYDNAKQAK 509

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++++    +N  L  +
Sbjct: 510 DLVGILQEAKQAVNPKLLEM 529


>gi|254526904|ref|ZP_05138956.1| DbpA RNA binding domain family protein [Prochlorococcus marinus
           str. MIT 9202]
 gi|221538328|gb|EEE40781.1| DbpA RNA binding domain family protein [Prochlorococcus marinus
           str. MIT 9202]
          Length = 593

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 124/412 (30%), Positives = 202/412 (49%), Gaps = 13/412 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D G +  ++ ++++ GY  PTPIQ   IP ++   D+ G AQTGTGKTA+F LP+   
Sbjct: 53  FLDFGFNQSILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPL-IE 111

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                  +     ++                   ++ N     + GG  +  Q   L+R 
Sbjct: 112 KLTDNKELNAKVLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKRK 171

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGRI+DH  +G   + +I  LV+DEAD ML+MGF+  I+ I   +P  +Q +L
Sbjct: 172 VDVVVGTPGRIMDHIRQGTFKIKHINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVL 231

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++ +++ +L +P  I + +     +         +    +   L       +
Sbjct: 232 FSATMPSEIKNIAKKYLNDPAEILIKS----VKKETQLISQKFLYVQRHHKLDALKRILE 287

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  IIF   K    ++  +LE  G +V  ++G+I Q  R   +   K+G I ++VA+
Sbjct: 288 LNNEGVIIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVAT 347

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  +  V N+D P   E Y HRIGRTGRAGR G+A   V + +   +  +E 
Sbjct: 348 DVAARGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLEN 407

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
               K++ +N        P  KI I +    +  + + + S   D  ++N S
Sbjct: 408 STRTKIEEINI-------PSNKI-INEKRMEKLIDNVNESSLAKDENEENKS 451


>gi|153826995|ref|ZP_01979662.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
 gi|149739156|gb|EDM53442.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
          Length = 397

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 149/373 (39%), Positives = 219/373 (58%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V  V   GY KPT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YGK+  L    + GG+  +AQ ++L
Sbjct: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  +++P  I +    ++   I    +                 
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 238 INEQQWDQALIFIETKHGAAKLVSQLEKRGIYAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357

Query: 360 IE----KLIEKKV 368
           IE     LIE++V
Sbjct: 358 IESRLGHLIERRV 370


>gi|127513705|ref|YP_001094902.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126639000|gb|ABO24643.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 451

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 151/454 (33%), Positives = 228/454 (50%), Gaps = 10/454 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  L L P +  A    GY   T +Q K IP  L   D+   AQTGTGKTA+F   +L
Sbjct: 1   MNFDALPLDPLLAQAAKACGYETLTQVQAKVIPTALAGRDLMACAQTGTGKTAAFSFVLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L      +     LIL PTRELA QVAD+  +Y +   LT   + GG     Q K L 
Sbjct: 61  QRLLNQPRAIGQLSALILTPTRELAIQVADSISRYSQFTELTTLAVYGGANINPQRKALA 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+ D   +  L +  ++ L++DEADRMLDMGF+  I+    L+  +  T
Sbjct: 121 RGVDILVATPGRLFDLLGQHDLSLETVDQLIVDEADRMLDMGFVRDIERTKRLLCVSHST 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT T E++ ++   L NP+ I V +    A +        Y   +++ A L   L 
Sbjct: 181 MLFSATFTPEVKALATKMLDNPEWINVTS----ASSGPQIEQKIYPLDARRKAELLAELI 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  ++F N K++   L   L+  G      HG+  Q +R + L  FK G ++++V
Sbjct: 237 GRNNWQQVLVFVNTKESAERLHRELKLDGIKNAVFHGDKTQGARNRALEQFKAGELRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N ++P+  ++Y+HRIGRTGRAG  G + + VAK+D   + AI
Sbjct: 297 ATDVAARGLDITALPLVINLELPDEPQDYVHRIGRTGRAGLSGVSISFVAKQDETALGAI 356

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           E LI K +  +   G       P    ++     ++   P   K   F  +       ++
Sbjct: 357 EALIGKTLPREVQPGYEMGAPLPARYRELDTRVTSKAAQPKRGKGQKFGSQDGRRGQSRA 416

Query: 419 HIPLKESEKIS----KLQQDIQENDADSLGFRGN 448
             P +++ +      K   D     +   GFRG 
Sbjct: 417 KAPQRKAPQRKTSSDKASNDKARRPSSDKGFRGK 450


>gi|254225316|ref|ZP_04918928.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
 gi|125622157|gb|EAZ50479.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
          Length = 397

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 148/373 (39%), Positives = 218/373 (58%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V  V   GY KPT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YGK+  L    + GG+  +AQ ++L
Sbjct: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  +++P  I +    ++   I    +                 
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      +IF   K     L   LEK+G    A H    Q  R ++L +FK   I+ +
Sbjct: 238 INEQQWDQALIFIETKHGAAKLVSQLEKRGIYAEAFHSGRSQAIRAQLLEDFKSAKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357

Query: 360 IE----KLIEKKV 368
           IE     LIE++V
Sbjct: 358 IESRLGHLIERRV 370


>gi|326801263|ref|YP_004319082.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21]
 gi|326552027|gb|ADZ80412.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21]
          Length = 597

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 131/370 (35%), Positives = 222/370 (60%), Gaps = 9/370 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLP 58
           M+ F+ LG+   VV A+   G+ KPTPIQ + IP +L    D  G+AQTGTGKTA+F LP
Sbjct: 1   MNPFSQLGIRHDVVNAISALGFEKPTPIQEQAIPALLTGSSDFVGLAQTGTGKTAAFGLP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNK 117
           +L +L+  +     P+ L+L PTREL  Q+ ++ + + KN +    + + G      Q +
Sbjct: 61  LLELLDFSQ---NTPQALVLCPTRELCLQITNDLKNFSKNLDNVHVVAVYGGANISDQLR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           ++ RG  +++ TPGR+LD   R  +  + +  +V+DEAD ML+MGF   I +I S  P  
Sbjct: 118 QIRRGVQIVVATPGRMLDIIGRKAIDFSGVRYVVLDEADEMLNMGFQEDINDILSTTPDE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           ++T LFSATM  E++++++N++ +P  + V T ++    I+H +        +      +
Sbjct: 178 KKTWLFSATMPAEVRRIAKNYMTDPFELTVGTKNTGNANIDHEYYIVRP---RDKYAAFK 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +    GI+FC  K     +  +L K G++  ++HG++ Q+ R K++  ++E ++Q
Sbjct: 235 RIVDFNPEIFGIVFCRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRERSLQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L++A+D+AARG+D+ +V HV NF +P+  ENY HR GRT RAG+ G + +LV  +++  I
Sbjct: 295 LLIATDVAARGIDVNNVTHVINFSLPDEIENYTHRSGRTARAGKTGVSISLVTSKELGKI 354

Query: 358 DAIEKLIEKK 367
             IE++I K+
Sbjct: 355 RQIERVIGKQ 364


>gi|312372785|gb|EFR20671.1| hypothetical protein AND_19720 [Anopheles darlingi]
          Length = 1061

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 118/382 (30%), Positives = 189/382 (49%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA  GL+  ++  V  +GY KPTPIQ   IP+VL+  D+ G AQTG+GKTA+F+LPM+ 
Sbjct: 118 SFAQSGLNEVLLNNVRRSGYNKPTPIQRHAIPIVLKGRDMMGCAQTGSGKTAAFMLPMID 177

Query: 62  I---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                +  +   R P  L++ PTREL  Q+ D   K+     L V  + GG     Q + 
Sbjct: 178 WILGQQDLQLHHRQPYVLVVAPTRELVIQIHDEARKFSHGTGLKVVCIYGGAASTHQLQM 237

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G  +++ TPGR+LD  +RG +    ++ +V+DEADRMLDMGF+P I+ +        
Sbjct: 238 LRGGCQIMVATPGRLLDFMDRGVVSFEKVKYVVLDEADRMLDMGFLPAIEKVMGNATMPS 297

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ-Q 237
           +    +   +       +          +                   +  K     + +
Sbjct: 298 KDQRQTLMFSATFAPDIQQLAGVFLNNYIYVAVGIVGGACGDVEQVVYEVEKFKKRKKLE 357

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +   +  ++F   K++   L   + +  F   +IHG+  QR R   L +FKEG + 
Sbjct: 358 ELLGEGNARGTLVFVETKRSADYLASLMSETKFPTTSIHGDRLQREREMALKDFKEGRMD 417

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKH 356
           +++A+ +AARGLDI +V HV N+D+P   ++Y+HRIGRTGR G  G+A +      D   
Sbjct: 418 VLIATSVAARGLDIKNVSHVVNYDLPKNIDDYVHRIGRTGRVGNKGRATSFYDPTADYAI 477

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
              + K++++    +   L  L
Sbjct: 478 AGDLVKILQQANQTVPDFLKHL 499


>gi|13470594|ref|NP_102163.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
 gi|14021336|dbj|BAB47949.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
          Length = 467

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 168/463 (36%), Positives = 259/463 (55%), Gaps = 25/463 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++ A  +AG+ +P PIQ++ IP  L+  D+ GIAQTG+GKTA+F LP+L+ 
Sbjct: 12  FAALGITGALLKATHNAGFTEPKPIQMQAIPPQLEGRDIFGIAQTGSGKTAAFALPILSK 71

Query: 63  LEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+ D  +   K  +++ AL++GG+   +Q KK+ 
Sbjct: 72  IIALGTKRRAKTTRALILAPTRELAVQIEDTIKILAKGAHVSTALVLGGVSRFSQVKKVA 131

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+LI TPGR+ D    G L++++ + LV+DE DRMLDMGFI  ++ I       RQT
Sbjct: 132 PGVDILIATPGRLTDLVREGDLILSDTKWLVLDEGDRMLDMGFINDVKRIAKATAPDRQT 191

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM DE+ ++++  L+NP RIEV+  S+ A  I           +K+   +   + 
Sbjct: 192 ALFSATMPDEIAELAKGLLKNPVRIEVSPQSTAAAEIVQ---GVVFARTKQKRQVLSTML 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + MK+ IIF   K     +   LE+ GF    IHGN  Q +R K L++F+EG+++++V
Sbjct: 249 ADEAMKSVIIFSRTKHGADRVTKDLERDGFKAAVIHGNKSQNARQKALNDFREGSVRILV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+P + HV NFD+P+ AE+Y+HRIGRTGR G  G A TL    +   +  +
Sbjct: 309 ATDIAARGIDVPGISHVVNFDLPDEAESYVHRIGRTGRNGMDGIAITLCDPSENSKLRQV 368

Query: 361 EKLIEKKVDWLNGDLSSLNP---PLEKID---------IAQHNHARKNNPIPQKSTGFDR 408
           E++I  K+  +   L S +P   P EK +                 +      K  GF  
Sbjct: 369 ERIIRTKLPIVADHLGSPDPQRNPAEKNERFEPANDRNDRNGRRDGRRPGGENKGNGFG- 427

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
            KK +  + +    ++ E     + + +        F G  PA
Sbjct: 428 -KKRFGDKPAFAGERKPEGAKPFKGNNKRR------FGGKRPA 463


>gi|88802153|ref|ZP_01117681.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Polaribacter irgensii 23-P]
 gi|88782811|gb|EAR13988.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Polaribacter irgensii 23-P]
          Length = 452

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 143/418 (34%), Positives = 218/418 (52%), Gaps = 6/418 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS ++  A+ D G+ +PTPIQ +   +V    DV GIAQTGTGKT +++LP+L
Sbjct: 1   MTFEDLDLSNQLQYAIDDLGFERPTPIQEQAFSVVRSGKDVVGIAQTGTGKTFAYMLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     + + PR LIL PTREL  QV +   +  K  N  V  + GG     Q + ++
Sbjct: 61  RDLPFS--KQQHPRVLILVPTRELVLQVVEQITQLSKYINTRVLGVYGGANINTQRQAIQ 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TPGR+ D      L M +I  LVIDE D MLD+GF   + NI  ++P  RQ 
Sbjct: 119 QGQDIIVATPGRLYDLAISNSLKMKSIHKLVIDEVDVMLDLGFRFQLMNIFDVIPEKRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+++  +  +F +NP++I V    +  + IE    AT   ++K   L   L  
Sbjct: 179 ILFSATMTEDVDALIYDFFKNPEKISVAVSGTPLDNIEQVSYATPNFFTKVNLLHTLLKD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   K  I    ++   +   H  E     +C IH N  Q  R++ +  F EG  ++++
Sbjct: 239 RETFHKVLIFVGFKRTADLLFKHLEEAFNDEICVIHSNKTQNYRIRSIRQFDEGKNRILL 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD   V HV NFD P+  ENY+HRIGRTGRA + GK       ++ +    I
Sbjct: 299 ATDVMARGLDFDKVSHVINFDTPDFPENYMHRIGRTGRAEKAGKTILFSTPKEQEAKGGI 358

Query: 361 EKLIEKKVDWLN-GDLSSLNPPLEKIDIAQHNHARKNNPIPQK---STGFDRRKKNYS 414
           E L+  ++  L   +   ++  L + +  + +     N    +      F  + +  S
Sbjct: 359 EVLMNYEIPLLELPEEVEVSTMLTEDERPREDQGISKNRTSLEYVPGPAFHDKSEKNS 416


>gi|288925364|ref|ZP_06419298.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella buccae
           D17]
 gi|315606787|ref|ZP_07881796.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae
           ATCC 33574]
 gi|288337835|gb|EFC76187.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella buccae
           D17]
 gi|315251452|gb|EFU31432.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae
           ATCC 33574]
          Length = 613

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 136/385 (35%), Positives = 217/385 (56%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F +LG+S  +  A+ + G+  P P+Q + IP +L    DV  +AQTGTGKTA++ LP++
Sbjct: 3   TFEELGVSEDIRRAIEELGFENPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAYGLPVV 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKL 119
              +      +     IL PTREL  Q+AD+   + K  +   VA + GG     Q + L
Sbjct: 63  QKTDATDKTTQAV---ILSPTRELCLQIADDLNAFSKYIDGLHVAAVYGGADIGPQIRTL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGR++D  NRG   ++ +  +V+DEAD ML+MGF   I  I   +P    
Sbjct: 120 KHGAQIIVATPGRLIDLINRGVAKLDQVNNIVLDEADEMLNMGFSESINAIFETLPDDHN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ E++++++N+L + K I V + +  AE + H     Y   +K   L  + +
Sbjct: 180 TLLFSATMSREVERIAKNYLHDHKEIVVGSRNEGAEHVNH---IYYLVNAKDKYLALKRV 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIFC  K     +   L K G++  A+HG++ Q+ R   +  F+  T+Q +
Sbjct: 237 VDFYPHIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRRHTVQFL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+  E+Y HR GRTGRAG+ G + +++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHTREKFKVRQ 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IEK I K  ++++G L S     +K
Sbjct: 357 IEKQIGK--EFVDGTLPSPEEICKK 379


>gi|78779495|ref|YP_397607.1| DEAD/DEAH box helicase-like [Prochlorococcus marinus str. MIT 9312]
 gi|78712994|gb|ABB50171.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str. MIT
           9312]
          Length = 593

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 134/401 (33%), Positives = 219/401 (54%), Gaps = 11/401 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D G +  ++ ++ + GY  PTPIQ   IP ++   D+ G AQTGTGKTA+F LP+  I
Sbjct: 53  FLDFGFNQSILNSLSNKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPL--I 110

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFE-KYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +    +    + L++ PTRELA QVA++F+    ++ N     + GG  +  Q   L+R
Sbjct: 111 EKLADNKELNAKVLVMTPTRELATQVAESFKSYSSESTNFKTIAIYGGTDYRNQIYALKR 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DV++ TPGRI+DH  +G   +N+I  LV+DEAD ML+MGF+  I+ I   +P  +Q +
Sbjct: 171 KVDVVVGTPGRIMDHIRQGTFKVNSINCLVLDEADEMLNMGFLEDIEWIIDQLPKNKQMV 230

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +E++ +++ +L +P  I + +     +         +    +   L       
Sbjct: 231 LFSATMPNEIRNIAKKYLNDPAEILIKS----VKKETQLISQKFLYVQRHHKLDALKRIL 286

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  IIF   K    ++  +LE  G SV  ++G+I Q  R   +   K+G I ++VA
Sbjct: 287 ELNNEGVIIFVRTKLLTTSIAEALENLGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVA 346

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D P   E Y HRIGRTGRAGR G+A   V   +   +  +E
Sbjct: 347 TDVAARGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNHREKHFLRNLE 406

Query: 362 KLIEKKVDWLNGDLSSL--NPPLEKI--DIAQHNHARKNNP 398
                K++ +N   + +     +EK+  ++ + + A+++N 
Sbjct: 407 NSTRTKIEEINIPSNKIINEKRMEKLIENVNESSLAKEDNE 447


>gi|330820807|ref|YP_004349669.1| DEAD/DEAH box helicase [Burkholderia gladioli BSR3]
 gi|327372802|gb|AEA64157.1| DEAD/DEAH box helicase [Burkholderia gladioli BSR3]
          Length = 459

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 150/370 (40%), Positives = 218/370 (58%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  + +  Y  PTP+Q K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIAPLLRNLQELNYQTPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +    V     R L+L PTRELA Q+  +F  YGK  +L      GG+    Q  K
Sbjct: 61  QRLVQHGPAVASNRARVLVLVPTRELAEQLLQSFVDYGKGLDLRFLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPERR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++ N L+ P  I V+ P++TA  I    V    +   +  +    
Sbjct: 181 QTLLFSATFSDEIRAMAANILRKPVDISVSAPNATASKIRQWVVTVDKRNKPELFMHL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +++  ++ ++F   +  V  L   LE+ G++V  IHG+  Q +R++ L  FK   IQ+
Sbjct: 239 -VARNKWEHALVFAKTRNGVDYLAAVLEQAGYAVDTIHGDKPQPARLRALERFKAREIQM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEKKV 368
           AIE LI + +
Sbjct: 358 AIEALIRQTL 367


>gi|152032523|sp|A4R8B5|HAS1_MAGO7 RecName: Full=ATP-dependent RNA helicase HAS1
          Length = 587

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 116/387 (29%), Positives = 198/387 (51%), Gaps = 4/387 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L LS   + A+ + G+ K T IQ + IP +L   DV G A+TG+GKT +F++P + +
Sbjct: 114 FSELNLSENTMKAIEEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAVEM 173

Query: 63  LEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   + + R    +I+  PTRELA Q+        K+++ T  ++IGG    A+ +KL +
Sbjct: 174 LRSLKFKPRNGTGVIVVSPTRELALQIFGVARDLMKHHSQTYGIVIGGANRRAEAEKLSK 233

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G ++LI TPGR+LDH      +  N+  LVIDEADR+L++GF   ++ I  ++P  RQ++
Sbjct: 234 GVNLLIATPGRLLDHLQNTPFVFKNLRSLVIDEADRILEIGFEDEMRQIIKILPKERQSM 293

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T +++ ++   L+               T+E          + K  +L      
Sbjct: 294 LFSATQTTKVEDLARVSLRPGPLYLNVDEEKEYSTVEGLEQGYVVCEADKRFILLFSFLQ 353

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   K  I+F +   +V      L      V  +HG   Q+ R      F       ++ 
Sbjct: 354 KMKKKKIIVFFSSCNSVKYYAELLNYIDCQVLDLHGKQKQQKRTNTFFEFCNADRGTLIC 413

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHIDAI 360
           +D+AARGLDIP V  +  FD P+   +YIHR+GRT R   + G++   +   ++  +  +
Sbjct: 414 TDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTNKKGRSLMFLLPSEVGFLTYL 473

Query: 361 E--KLIEKKVDWLNGDLSSLNPPLEKI 385
           +  ++   + D+    + ++   LEK+
Sbjct: 474 KQARVPVVEFDFPTKSIKNVQSQLEKL 500


>gi|254249566|ref|ZP_04942886.1| Helicase [Burkholderia cenocepacia PC184]
 gi|124876067|gb|EAY66057.1| Helicase [Burkholderia cenocepacia PC184]
          Length = 505

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 152/370 (41%), Positives = 220/370 (59%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  +    Y  PTP+Q K IP+VL   DV   AQTGTGKTA F LP+L
Sbjct: 23  MSFASLGLIEPLLRNLQRLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLL 82

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +    V   R    +L PTRELA QV  +F +YGK  +L      GG+    Q  K
Sbjct: 83  QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMK 142

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 143 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKR 202

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++K++   L++P  I V+ P++TA  I+   V    +      +    
Sbjct: 203 QTLLFSATFSDEIRKMAAGILRSPVDISVSPPNATASKIKQWVVPVDKRNKPDLFMHL-- 260

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +Q+  ++ ++F   +  V  L   LEK G++V  IHG+  Q +R++ L  FK G +Q+
Sbjct: 261 -VAQNRWEHALVFVKTRNGVDYLALMLEKAGYAVDTIHGDKPQPARLRALERFKTGEVQM 319

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 320 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 379

Query: 359 AIEKLIEKKV 368
           AIE LI + +
Sbjct: 380 AIEALIRQTL 389


>gi|170736938|ref|YP_001778198.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169819126|gb|ACA93708.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 483

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 152/370 (41%), Positives = 220/370 (59%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  +    Y  PTP+Q K IP+VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIEPLLRNLQRLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +    V   R    +L PTRELA QV  +F +YGK  +L      GG+    Q  K
Sbjct: 61  QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++K++   L++P  I V+ P++TA  I+   V    +      +    
Sbjct: 181 QTLLFSATFSDEIRKMAAGILRSPVDISVSPPNATASKIKQWVVPVDKRNKPDLFMHL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +Q+  ++ ++F   +  V  L   LEK G++V  IHG+  Q +R++ L  FK G +Q+
Sbjct: 239 -VAQNRWEHALVFVKTRNGVDYLALMLEKAGYAVDTIHGDKPQPARLRALERFKTGEVQM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEKKV 368
           AIE LI + +
Sbjct: 358 AIEALIRQTL 367


>gi|110834556|ref|YP_693415.1| DEAD-box ATP dependent DNA helicase [Alcanivorax borkumensis SK2]
 gi|110647667|emb|CAL17143.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax
           borkumensis SK2]
          Length = 551

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 142/370 (38%), Positives = 215/370 (58%), Gaps = 6/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   ++ A+   G+ +P+PIQ + IPL+L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FASLGLPEVLLTAIARQGFEQPSPIQAQAIPLLLDGHDLLGQAQTGTGKTAAFALPLLAR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+        P+ LIL PTRELA QVA   E++ K+      L I  G  +  Q K L  
Sbjct: 68  LDPSLRE---PQMLILAPTRELAIQVATACEEFAKDIKGLQVLPIYGGGEYRTQLKGLRG 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH +RG + +NN++ LV+DEAD ML MGFI  ++ +    P   Q  
Sbjct: 125 GAQVIVGTPGRVMDHMDRGSMKLNNLKALVLDEADEMLRMGFIDDVKWVLERTPDDCQLA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++KV++  L+ PK + ++   +T  T         A  +K  A+ + L   
Sbjct: 185 LFSATMPPVIRKVADQHLKQPKLVRIDNGGATTGTTIRQRYWPVAGLNKLDAVCRILEAE 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      ++F   K+  + L   L ++G    A++G+I Q+ R K +   K+    L++A
Sbjct: 245 EHDA--VLVFVRTKQATLELAEQLNRRGLRAEALNGDIPQQQREKTVQRLKDKRFDLLIA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P + HV N+D+P   E Y+HRIGRTGRAGR G A   VA+ +   +  IE
Sbjct: 303 TDVVARGLDVPRITHVVNYDMPGDPEAYVHRIGRTGRAGRQGDAILFVARREQHVLRQIE 362

Query: 362 KLIEKKVDWL 371
           ++  + ++ +
Sbjct: 363 RITRQSIEKM 372


>gi|15218574|ref|NP_177417.1| eukaryotic translation initiation factor 4A, putative / eIF-4A,
           putative [Arabidopsis thaliana]
 gi|75333652|sp|Q9CAI7|IF4A3_ARATH RecName: Full=Eukaryotic initiation factor 4A-3; Short=eIF-4A-3;
           AltName: Full=ATP-dependent RNA helicase eIF4A-3;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 23
 gi|12323781|gb|AAG51861.1|AC010926_24 putative Eukaryotic initiation factor 4A; 30924-32477 [Arabidopsis
           thaliana]
 gi|16974629|gb|AAL31217.1| At1g72730/F28P22_8 [Arabidopsis thaliana]
 gi|21593752|gb|AAM65719.1| putative Eukaryotic initiation factor 4A [Arabidopsis thaliana]
 gi|22655476|gb|AAM98330.1| At1g72730/F28P22_8 [Arabidopsis thaliana]
 gi|332197244|gb|AEE35365.1| translation initiation factor 4A-3 [Arabidopsis thaliana]
          Length = 414

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 193/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F      
Sbjct: 42  SFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFC---SG 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L++    +   + L+L PTRELA Q+       G    +     +GG       + L+ 
Sbjct: 99  VLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQS 158

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 159 GVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVG 218

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 219 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL--YE 276

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 277 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   +  ED + +  I+
Sbjct: 337 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQ 396

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     V+ L  +++ L
Sbjct: 397 RFYNVVVEELPSNVADL 413


>gi|219667645|ref|YP_002458080.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
 gi|219537905|gb|ACL19644.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 428

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 148/418 (35%), Positives = 231/418 (55%), Gaps = 11/418 (2%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +L +   +  A+   GY + TPIQ + IP +L+  D+ G AQTGTGKTA+F +P+L  L 
Sbjct: 8   ELKIINPIQKALAAQGYSEATPIQAEAIPHLLEGLDLLGCAQTGTGKTAAFAIPILQSLA 67

Query: 65  KGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            G+      R  R L+L PTRELA Q+A++F  YG N  L   ++ GG+    Q +KLE+
Sbjct: 68  MGQGLLKGKRQIRALVLAPTRELATQIAESFTAYGVNLPLRTLVIFGGVGQAPQTRKLEK 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+L+ TPGR+LD  N+G + ++++E  V+DE D+MLDMG +  ++ I + +P  RQ +
Sbjct: 128 GIDILVATPGRLLDLINQGFIDLSHVEHFVLDETDQMLDMGMLHDVKRIITYLPRERQNM 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++K+++  L+ P +I +    S  + IE                       
Sbjct: 188 LFSATMPVEIEKLADTILKGPVKIAMTPEFSPLDIIEQEVYFVDKANKAAL---LTYWLK 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + ++F   K     +   L K+GF+  AIHGN  Q +R + L  FK+   +++VA
Sbjct: 245 NNEYDSVLVFSRTKHGADKIVKELNKKGFTAVAIHGNKSQANREQALHAFKKRKTRILVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++ HV N+++P   E YIHRIGRTGRAG  GKA T    E+   +  I+
Sbjct: 305 TDIAARGLDIQELSHVINYNLPEVPETYIHRIGRTGRAGLGGKAITFCDFEEKPLLRDIQ 364

Query: 362 KLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           K I K +  +       ++++  P  K    Q   AR   P   K+  + ++  + + 
Sbjct: 365 KRIGKTLPEVKEHPYPLVNTVIVPKAKTSQ-QAAAARPQKPATAKTAAYSQQGAHRAK 421


>gi|89896500|ref|YP_519987.1| hypothetical protein DSY3754 [Desulfitobacterium hafniense Y51]
 gi|89335948|dbj|BAE85543.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 478

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 148/418 (35%), Positives = 231/418 (55%), Gaps = 11/418 (2%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           +L +   +  A+   GY + TPIQ + IP +L+  D+ G AQTGTGKTA+F +P+L  L 
Sbjct: 58  ELKIINPIQKALAAQGYSEATPIQAEAIPHLLEGLDLLGCAQTGTGKTAAFAIPILQSLA 117

Query: 65  KGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            G+      R  R L+L PTRELA Q+A++F  YG N  L   ++ GG+    Q +KLE+
Sbjct: 118 MGQGLLKGKRQIRALVLAPTRELATQIAESFTAYGVNLPLRTLVIFGGVGQAPQTRKLEK 177

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+L+ TPGR+LD  N+G + ++++E  V+DE D+MLDMG +  ++ I + +P  RQ +
Sbjct: 178 GIDILVATPGRLLDLINQGFIDLSHVEHFVLDETDQMLDMGMLHDVKRIITYLPRERQNM 237

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++K+++  L+ P +I +    S  + IE                       
Sbjct: 238 LFSATMPVEIEKLADTILKGPVKIAMTPEFSPLDIIEQEVYFVDKANKAAL---LTYWLK 294

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + ++F   K     +   L K+GF+  AIHGN  Q +R + L  FK+   +++VA
Sbjct: 295 NNEYDSVLVFSRTKHGADKIVKELNKKGFTAVAIHGNKSQANREQALHAFKKRKTRILVA 354

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++ HV N+++P   E YIHRIGRTGRAG  GKA T    E+   +  I+
Sbjct: 355 TDIAARGLDIQELSHVINYNLPEVPETYIHRIGRTGRAGLGGKAITFCDFEEKPLLRDIQ 414

Query: 362 KLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           K I K +  +       ++++  P  K    Q   AR   P   K+  + ++  + + 
Sbjct: 415 KRIGKTLPEVKEHPYPLVNTVIVPKAKTSQ-QAAAARPQKPATAKTAAYSQQGAHRAK 471


>gi|322708721|gb|EFZ00298.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Metarhizium
            anisopliae ARSEF 23]
          Length = 1245

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 133/422 (31%), Positives = 211/422 (50%), Gaps = 17/422 (4%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
             +A  GL+ + +  + + GY KPT IQ++ IP ++   DV G+A+TG+GKT +F+LPM  
Sbjct: 619  KWAQCGLTRQTLDVIDNLGYEKPTTIQMQAIPTLMSGRDVVGVAKTGSGKTVAFLLPMFR 678

Query: 62   ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +           P  LI+ PTRELA Q+  + + + K+  L      GG P   Q  +L
Sbjct: 679  HIMDQPPIKDTDGPVGLIMTPTRELATQIHRDCKPFLKSMGLRAVCAYGGAPIRDQIAEL 738

Query: 120  ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +RGA++++CTPGR++D           +  +  +V+DEADRM DMGF P +  I + +  
Sbjct: 739  KRGAEIIVCTPGRMIDLLAANQGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIFAGMRP 798

Query: 177  TRQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +QT+LFSATM   +     +      +           E  +   V        +   L
Sbjct: 799  DKQTILFSATMPRIIDSLTKKVLKSPVEITVGGRSVVAKEIEQIVEVREENTKFLRVLEL 858

Query: 236  QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
               L  +D     +IF ++++   +L   L  +G+   +IHG  DQ  R   +S+FK+G 
Sbjct: 859  LGELYDRDEDARALIFVDRQEKADDLLKELMVKGYPCMSIHGGKDQVDRDSTISDFKKGV 918

Query: 296  IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            + L+VA+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T V  +   
Sbjct: 919  VPLLVATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGVAVTFVTPDQEN 978

Query: 356  HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK-NNPIPQKSTGFDRRKKNYS 414
                I K +E+          S  P  E+++  +  H  K  +   + S+GF  +  +  
Sbjct: 979  CAPGIAKALEQ----------SEQPVPERLNEMRKAHREKVKSGKAKDSSGFGGKGLDRL 1028

Query: 415  SQ 416
             Q
Sbjct: 1029 DQ 1030


>gi|291242221|ref|XP_002741008.1| PREDICTED: probable ATP-dependent RNA helicase DDX52-like
           [Saccoglossus kowalevskii]
          Length = 681

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 117/484 (24%), Positives = 219/484 (45%), Gaps = 26/484 (5%)

Query: 2   DFADLG----LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     ++  ++  V D GY  PTPIQ++T+PL+L R +V   A TG+GKTA+F++
Sbjct: 166 SFQQLKQEYKINSTILKNVEDVGYQSPTPIQMQTLPLMLHRREVLACAPTGSGKTAAFII 225

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI---PFEA 114
           P+L  L++   R +  R +++ PTRELA Q    F +  +  +  + ++           
Sbjct: 226 PVLHHLKEP--RKQGFRAVVVSPTRELAQQTYREFCRLAEGRSFRIHIIDKTSQAAKKFG 283

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
                +    V        + + +   L + N+E L++DE+D++ + G   + +      
Sbjct: 284 PQSSQKFDILVTTPNRLVYMLNQHPPALNLTNVEWLIVDESDKLFEEGKQGFREQLALIY 343

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT   ++++  +  L N   + +   ++  +TIE   +    +Y K
Sbjct: 344 KACDSMQVRRAMFSATFAYDVEQWCKLNLDNVASVTIGQRNAAVDTIEQELLFVGQEYGK 403

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+   + +        ++F   K+    L   L   G +V  IH +  Q  R  ++ +
Sbjct: 404 LLAIRDIIRKGVQPPM--LVFVQSKERAKELFLELIYDGINVDVIHADRTQTQRDNVVRS 461

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ ++L  RG+D   V  V N+D P+ A +YIHRIGRTGRAGR G+A T   
Sbjct: 462 FRAGKIWILICTELMGRGIDFKGVNLVVNYDFPSSAVSYIHRIGRTGRAGRAGRAVTFFT 521

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI--DIAQHNHARKN-NPIPQKSTGFD 407
            +D+ ++ +I  ++ +    +   +  L  P +K    +A+H   R+    +P       
Sbjct: 522 HDDVTNLRSIANVMREAGCPVPDYMLELPKPSKKTRKQLAKHEVKRETIRTLPTDILQRT 581

Query: 408 RRKKNY--------SSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRG 459
           +RKK +           +S +   E +   K ++   E         G++      K + 
Sbjct: 582 KRKKKFIKMIKQRRDEDRSVVNENEKKVKIKTRRKSNEKPVKETADGGHVTEPNKVKEKN 641

Query: 460 KLND 463
              D
Sbjct: 642 SKTD 645


>gi|171059208|ref|YP_001791557.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170776653|gb|ACB34792.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 502

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 146/417 (35%), Positives = 236/417 (56%), Gaps = 15/417 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F  LGL   ++ +V  AGY  PT +Q +TIP  LQ  D+   + TG+GKTA+FVLP  
Sbjct: 1   MTFDTLGLHEAILKSVTAAGYDTPTDVQAQTIPPALQGLDLRVCSNTGSGKTAAFVLPAL 60

Query: 60  --------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGI 110
                        + + +V  PR L+L PTRELA QV+     YG++   L VA ++GG+
Sbjct: 61  QRVLAARNDPSKARAKGQVCGPRVLVLAPTRELAMQVSKAASTYGQHVAGLRVATIVGGV 120

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
           P+ AQ   L +  D+LI TPGR++DH N GK ++ ++E+L++DEADRMLDMGFI  I+ I
Sbjct: 121 PYPAQLAALRKPLDILIATPGRLIDHLNSGKAVLGDVEMLILDEADRMLDMGFIEDIERI 180

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
              +P  RQT++ SAT   ++ ++++  L++  +    T  +         +        
Sbjct: 181 AESLPQERQTVMVSATFAGQVGRLADQILKSDAKRIEITSHTDNHENIEQQLLWADSIEH 240

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K  LL+ LL  ++  +  ++F + +++   L   L + G +V  +HG + Q  R + L  
Sbjct: 241 KAKLLEHLLTEREM-QQALVFTSTQRDADELAAHLYELGHAVAPLHGGMPQGRRSRTLMA 299

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
            + G I++++A+D+AARG+D+P + HV NF +P +AE+Y+HRIGRTGRAGR G+A TL  
Sbjct: 300 LRNGEIKVLIATDVAARGIDVPTISHVINFGLPMKAEDYVHRIGRTGRAGRTGRAITLAE 359

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNP--PLEKIDIAQHNHARKNNPIPQKSTG 405
           + D+  I  I++   + +      ++ L P  P  ++ +++    R     P +  G
Sbjct: 360 RRDVGMIRRIQQFTTQTIPV--TVIAGLEPTRPAPEMFLSRGAPRRDAGRPPHRGAG 414


>gi|328697410|ref|XP_001948642.2| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Acyrthosiphon pisum]
          Length = 718

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 125/379 (32%), Positives = 204/379 (53%), Gaps = 5/379 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--L 60
           F +      VV  +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP    
Sbjct: 109 FIEGNFPESVVQELKKQGFSEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYMLPAAVH 168

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              ++   R   P  L+L PTRELA Q+    + +    ++    + GG P   Q   L+
Sbjct: 169 ISNQEPLQRGDGPIALVLAPTRELAQQIQSVAKMFS--SSIRNTCIFGGTPKGPQAHDLQ 226

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G +++I TPGR++D   RG   +  +  LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 227 NGVEIVIATPGRLIDFLERGSTNLKRVTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 286

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLL 239
           L++SAT   E+Q ++ +FL +  +I V +    A       +     + K        + 
Sbjct: 287 LMWSATWPKEVQALAADFLVDYIQINVGSLELAANHNIQQLIEVCEDHEKDYKLFDLLMK 346

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S +     IIF  +KK V  L   ++ +G+   ++HG+  Q+ R  +L+ F+ G   ++
Sbjct: 347 ISNEPGFKAIIFVEKKKKVDELTRQIKNEGYIATSMHGDKSQQDRDHVLNEFRNGKSPIL 406

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV +V NFD PN +E+Y+HRIGRTGR+ + G A+T  +  +++    
Sbjct: 407 VATDVAARGLDVDDVKYVINFDYPNSSEDYVHRIGRTGRSKQAGIAYTFFSTNNMRQAKD 466

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +  ++E+    +  +L  +
Sbjct: 467 LISILEEAHQVVPEELIEM 485


>gi|291407215|ref|XP_002720005.1| PREDICTED: CG7878-like [Oryctolagus cuniculus]
          Length = 635

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 135/407 (33%), Positives = 220/407 (54%), Gaps = 14/407 (3%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI---LEKG 66
           P+++  +  A + KPTPIQ +  P++LQ  D+ G+AQTGTGKT S+++P           
Sbjct: 239 PELMRNIKKASFQKPTPIQSQAWPVILQGIDLIGVAQTGTGKTLSYLMPGFIHLDSQPTS 298

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R     P  L+L PTRELA QV     KY        + + GG     Q + + +G D++
Sbjct: 299 REERNGPGMLVLTPTRELALQVESECSKYSYK-GFKSSCIYGGGNRRGQIEDIAKGVDII 357

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + +I  LV+DEAD+MLD+GF   I  I   V   RQT++ SAT
Sbjct: 358 IATPGRLNDLQLNNHVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTVMTSAT 417

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             D +++++ ++L++P  + V T    A +     V    +  K+  + Q+ L++     
Sbjct: 418 WPDAIRRLAHSYLKDPMMVYVGTLDLVAVSTVQQNVIVTTEEEKRALI-QEFLENMTPRD 476

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+F ++K    +L   L  QG  + ++HG+ +Q  R + L +F+ G +++++A+DLA+
Sbjct: 477 KVIVFVSRKITADDLASDLGIQGIPIESLHGDREQSDREQALEDFRTGKVKILIATDLAS 536

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLD+ D+ HV+N+D P   E Y+HRIGRTGRAG+ G + TLV   D K  D + K++E+
Sbjct: 537 RGLDVNDITHVYNYDFPRNIEEYVHRIGRTGRAGKVGTSITLVTPNDAKIADELIKILER 596

Query: 367 KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
               +  DL         + +A+     K +   +    F  + KN+
Sbjct: 597 ANQNVPEDL---------VKMAEGYKFHKKSSTEKNFKMFRGKYKNF 634


>gi|156547765|ref|XP_001605842.1| PREDICTED: similar to CG9748-PA [Nasonia vitripennis]
          Length = 708

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 140/394 (35%), Positives = 205/394 (52%), Gaps = 17/394 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L+  +  ++  AGY KPTP+Q   IP+++ R DV   AQTG+GKTA+F++P+L 
Sbjct: 227 SFDEVKLTEIIKNSINLAGYDKPTPVQKYAIPIIIGRRDVMACAQTGSGKTAAFLVPILN 286

Query: 62  ILEKGRA----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
            + +             R + P  L+L PTRELA Q+ D   K+     +  A++ GG  
Sbjct: 287 QIYESGPPPLPPNASGRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGGSN 346

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ--- 168
              Q ++L+RG  +L+ TPGR++D   RGK+ ++N   LV+DEADRMLDMGF P I+   
Sbjct: 347 MVEQLRELDRGCHLLVATPGRLVDMLGRGKIGLHNCRYLVLDEADRMLDMGFEPQIRRIV 406

Query: 169 -NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
              T      RQTL+FSAT   E+Q ++ +FL N   + V    ST+E I    V     
Sbjct: 407 EQDTMPPTGERQTLMFSATFPKEIQMLARDFLSNYIFLAVGRVGSTSENITQKIVWVEEH 466

Query: 228 YSKKCALLQQLLQSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
             +   L      +          ++F   KK    L   L  Q + V +IHG+  Q  R
Sbjct: 467 EKRSYLLDLLGACNFQEPTQESLTLVFVETKKGADMLEEFLHNQHYPVTSIHGDRSQHER 526

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
              L  F+ G   ++VA+ +AARGLDIP V HV NFD+P   E Y+HRIGRTGR G  G 
Sbjct: 527 EDALRRFRSGHTPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGNLGL 586

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           A +    ++   +  +  L+ +    L   L  +
Sbjct: 587 ATSFFNSKNQNLVRDLVSLLVEANQELPHWLEDM 620


>gi|187734959|ref|YP_001877071.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425011|gb|ACD04290.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 604

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 148/458 (32%), Positives = 235/458 (51%), Gaps = 42/458 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ LG+SP+++ A+   G+  P+ IQ + IP  +   D+ G++ TG+GKT +F +P L 
Sbjct: 6   SFSALGISPEILEAIEVLGFDTPSSIQEQAIPAAIGGADIVGLSHTGSGKTLAFAIPALE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++      R  + L L PTRELA Q+    +K     +   A+ I G   F  Q   L 
Sbjct: 66  CIDP---EERCVQVLALCPTRELAVQICREVDKLALFMDGVSAVPIYGGSSFRPQLDALR 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG   ++ TPGR++D    G L ++ + +L++DEAD MLDMGF+  I+ I   +P  +QT
Sbjct: 123 RGVQFVVGTPGRVMDLMESGALRLDGLRMLILDEADEMLDMGFLEDIERIADAMPEGKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM+ E+ ++   F++ P +I +  P+ T  TIE  +         +         
Sbjct: 183 LFFSATMSPEISRLVSRFMKEPVQISIERPTLTVPTIEQVYYEVVFSSRIEVLSRLLDTG 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  G++F N KK V ++   L  +G+ V  +HG++ Q  R +++ +F++G+++L+V
Sbjct: 243 KIKM---GLVFANTKKVVDDVVDGLTARGYPVDRLHGDMPQMMRERVMDSFRKGSLRLLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV  V NF++P   E+Y+HRIGRT RAGR GKA T V + D   +  I
Sbjct: 300 ATDIAARGLDVDDVDAVVNFELPRDPEDYVHRIGRTARAGRKGKAITFVGRRDFSLMSRI 359

Query: 361 EKLIEKK-----------VDWLNGD------LSSLNP----PLE--------------KI 385
           E+ I  K           VD L  +      L  L P    P E                
Sbjct: 360 ERFIGVKLTPEPVLTAVQVDQLRTESLVDDILERLKPDAVLPEELKEVEAAPEAMAAALF 419

Query: 386 DIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLK 423
           D+ +    R+  PIP+       R+   + +++  P K
Sbjct: 420 DLLRERTHREVQPIPEDKPARRARRMPQTGEEAESPQK 457


>gi|142982611|sp|P0C2N8|DRS1_NEUCR RecName: Full=ATP-dependent RNA helicase drs-1
          Length = 829

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 155/472 (32%), Positives = 236/472 (50%), Gaps = 9/472 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ LS  ++  +   G+ KPTPIQ KTIP+ L   DV G A TG+GKTA+FV+P+L 
Sbjct: 294 SFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVPILE 353

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R +IL PTRELA Q      K   + ++   L +GG+  + Q  +L  
Sbjct: 354 RLLYRPKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSLKVQEAELRL 413

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ IEILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 414 RPDVVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLEDGFADELNEILTTLPKSRQT 473

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT  + ++    L  P RI  ++   TA T+   FV        K       + 
Sbjct: 474 MLFSATMTSSVDRLIRAGLNKPVRIMADSQKKTAGTLVQEFVRLRPGRESKREGYLLHIC 533

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  IIF  QKK    +       G S   +HG+++Q  R++ + +F++G +  ++
Sbjct: 534 KTIYTERVIIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQAQRIQSVEDFRDGKVNFLL 593

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G A TL A+ D K + A 
Sbjct: 594 ATDLASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAA 653

Query: 361 EKLIEKK--------VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            K  + +        +D  + D         + +I +     K     Q      ++ +N
Sbjct: 654 VKAGKSQGAKISSRIIDPADADKWQAEIDELEDEIEEIMQEEKEEKQLQNMEMQVKKGEN 713

Query: 413 YSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
               +  I  +      + Q+D ++  A        +   +  KN GKL++K
Sbjct: 714 MIKYEDEISSRPKRTWFETQEDKKKAKAAGRAELNGVRDKLKSKNEGKLSNK 765


>gi|319425659|gb|ADV53733.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 481

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 154/477 (32%), Positives = 238/477 (49%), Gaps = 21/477 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           M F  LGLS  ++ A+ + GY + T +Q K IPL  +  D+   AQTGTGKTA+F LP  
Sbjct: 1   MKFETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTAAFALPVL 60

Query: 59  ---MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                 IL        + R L++ PTRELA QV DN +KY +   L    + GG     Q
Sbjct: 61  EKLAAEILVNDGNDKPILRALVMTPTRELAIQVCDNIQKYSQFLPLKTIAVYGGANMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K +E+G D+L+ TPGR+ D   + +L ++++  LVIDEADRMLDMGF+  I+ +  L+ 
Sbjct: 121 RKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKRLIA 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              QT+LFSAT +D +++      Q           +   T        Y    ++ A L
Sbjct: 181 PVHQTMLFSATYSDAVKQ----LAQKMLNEPQWVNVADTTTASTVVQEVYRVDKRRKAEL 236

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L  ++  +  ++F + K++  +L   L+  G +    HG+  Q +R ++L +FK G 
Sbjct: 237 LSELVGRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEDFKLGK 296

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGLDI  +  V N ++P  AE+YIHRIGRTGRAG  G+A + V+  D +
Sbjct: 297 LRVLVATDVAARGLDIQALPLVINLELPFFAEDYIHRIGRTGRAGLAGRAISFVSPSDDE 356

Query: 356 HIDAIEKLIEKKVDWL--NGDLSSLNPPLEKIDI-------AQHNHARKNNPIPQKSTGF 406
            +  IE LIE+K+      G       P    DI       A+ ++    +    KS+  
Sbjct: 357 MLTEIEALIEQKLPVSVQPGYEEGTPLPARYRDIPASPTKPAKWSYKAPKDRAIGKSSES 416

Query: 407 DRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
             R +    + +   ++ES          + + A+  G  G       PK       
Sbjct: 417 QARSRQNIGRDA---MRESPTREGKYAKDKAHGAEGKGSAGKPFNTTKPKPHSGSRS 470


>gi|45709504|gb|AAH67585.1| Ddx5 protein [Danio rerio]
          Length = 496

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 130/378 (34%), Positives = 199/378 (52%), Gaps = 3/378 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +      V+  +    +  PTPIQ +  P+ L   D+ GIAQTG+GKT S++LP +
Sbjct: 96  VKFHEANFPKYVMDVITKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAI 155

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +           P  L+L PTRELA QV     +YGK   +    + GG P   Q + 
Sbjct: 156 VHINHQPFLEHGDGPICLVLAPTRELAQQVQQVAAEYGKASRIKSTCIYGGAPKGPQIRD 215

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 216 LERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 275

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQ 237
           QTL++SAT   E+++++E+FL+   +I V     +A       V       K+   +   
Sbjct: 276 QTLMWSATWPKEVRQLAEDFLKEYIQINVGALQLSANHNILQIVDVCNDGEKEDKLIRLL 335

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                +     IIF   K+   +L   + + G+    IHG+ +Q+ R  +L+ FK G   
Sbjct: 336 EEIMSEKENKTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKAP 395

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V NFD PN +E+YIHRIGRT R+ + G A+T     ++K  
Sbjct: 396 ILIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQA 455

Query: 358 DAIEKLIEKKVDWLNGDL 375
             +  ++ +    +N  L
Sbjct: 456 HDLVSVLREANQAINPKL 473


>gi|332243110|ref|XP_003270725.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Nomascus leucogenys]
          Length = 938

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 221/379 (58%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 314 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 373

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 374 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 433

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 434 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 493

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++
Sbjct: 494 EFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 552

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 613 LVRNLEGANQHVSKELLDL 631


>gi|311266965|ref|XP_003131337.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
           DDX42-like [Sus scrofa]
          Length = 941

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 221/379 (58%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 314 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 373

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 374 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 433

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 434 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 493

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++
Sbjct: 494 EFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 552

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 613 LVRNLEGANQHVSKELLDL 631


>gi|301778305|ref|XP_002924562.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Ailuropoda
           melanoleuca]
          Length = 935

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 221/379 (58%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 314 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 373

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 374 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 433

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 434 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 493

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++
Sbjct: 494 EFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 552

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 613 LVRNLEGANQHVSKELLDL 631


>gi|296201782|ref|XP_002748184.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Callithrix jacchus]
          Length = 934

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 221/379 (58%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 314 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 373

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 374 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 433

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 434 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 493

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++
Sbjct: 494 EFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 552

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 613 LVRNLEGANQHVSKELLDL 631


>gi|291406357|ref|XP_002719521.1| PREDICTED: DEAD box polypeptide 42 protein [Oryctolagus cuniculus]
          Length = 935

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 221/379 (58%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 314 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 373

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 374 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 433

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 434 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 493

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++
Sbjct: 494 EFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 552

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 613 LVRNLEGANQHVSKELLDL 631


>gi|281351661|gb|EFB27245.1| hypothetical protein PANDA_013938 [Ailuropoda melanoleuca]
          Length = 940

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 221/379 (58%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 259 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 318

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 319 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 378

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 379 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 438

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 439 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 498

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++
Sbjct: 499 EFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 557

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 558 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 617

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 618 LVRNLEGANQHVSKELLDL 636


>gi|194216767|ref|XP_001501051.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           [Equus caballus]
          Length = 935

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 221/379 (58%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 314 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 373

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 374 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 433

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 434 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 493

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++
Sbjct: 494 EFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 552

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 613 LVRNLEGANQHVSKELLDL 631


>gi|119614684|gb|EAW94278.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_c [Homo
           sapiens]
          Length = 936

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 221/379 (58%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 252 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 311

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 312 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 371

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 372 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 431

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 432 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 491

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++
Sbjct: 492 EFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 550

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 551 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 610

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 611 LVRNLEGANQHVSKELLDL 629


>gi|114669826|ref|XP_001147663.1| PREDICTED: DEAD box polypeptide 42 protein isoform 5 [Pan
           troglodytes]
 gi|114669828|ref|XP_001147738.1| PREDICTED: DEAD box polypeptide 42 protein isoform 6 [Pan
           troglodytes]
 gi|114669830|ref|XP_001147818.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 7 [Pan
           troglodytes]
 gi|114669832|ref|XP_001147880.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 8 [Pan
           troglodytes]
          Length = 938

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 221/379 (58%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 314 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 373

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 374 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 433

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 434 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 493

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++
Sbjct: 494 EFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 552

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 613 LVRNLEGANQHVSKELLDL 631


>gi|114669834|ref|XP_001147587.1| PREDICTED: DEAD box polypeptide 42 protein isoform 4 [Pan
           troglodytes]
          Length = 775

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 221/379 (58%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 91  SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 150

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 151 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 210

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 211 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 270

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 271 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 330

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++
Sbjct: 331 EFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 389

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 390 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 449

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 450 LVRNLEGANQHVSKELLDL 468


>gi|109116835|ref|XP_001116381.1| PREDICTED: ATP-dependent RNA helicase DDX42-like isoform 5 [Macaca
           mulatta]
 gi|109116837|ref|XP_001116390.1| PREDICTED: ATP-dependent RNA helicase DDX42-like isoform 6 [Macaca
           mulatta]
          Length = 937

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 221/379 (58%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 314 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 373

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 374 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 433

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 434 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 493

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++
Sbjct: 494 EFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 552

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 613 LVRNLEGANQHVSKELLDL 631


>gi|51258614|gb|AAH78667.1| DDX42 protein [Homo sapiens]
          Length = 919

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 221/379 (58%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 235 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 294

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 295 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 354

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 355 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 414

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 415 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 474

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++
Sbjct: 475 EFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 533

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 534 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 593

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 594 LVRNLEGANQHVSKELLDL 612


>gi|15930131|gb|AAH15505.1| DDX42 protein [Homo sapiens]
 gi|23336904|tpg|DAA00077.1| TPA_exp: SF3b125 DEAD-box protein [Homo sapiens]
 gi|158259277|dbj|BAF85597.1| unnamed protein product [Homo sapiens]
          Length = 819

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 221/379 (58%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 135 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 194

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 195 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 254

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 255 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 314

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 315 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 374

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++
Sbjct: 375 EFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 433

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 434 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 493

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 494 LVRNLEGANQHVSKELLDL 512


>gi|3435312|gb|AAC32396.1| RNA helicase-related protein [Homo sapiens]
          Length = 709

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 221/379 (58%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 135 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 194

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 195 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 254

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 255 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 314

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 315 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 374

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++
Sbjct: 375 EFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 433

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 434 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 493

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 494 LVRNLEGANQHVSKELLDL 512


>gi|73965187|ref|XP_537598.2| PREDICTED: similar to DEAD box polypeptide 42 protein isoform 1
           [Canis familiaris]
          Length = 696

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 221/379 (58%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 314 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 373

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 374 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 433

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 434 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 493

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++
Sbjct: 494 EFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 552

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 613 LVRNLEGANQHVSKELLDL 631


>gi|73965191|ref|XP_861211.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           isoform 3 [Canis familiaris]
          Length = 533

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 221/379 (58%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 91  SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 150

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 151 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 210

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 211 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 270

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 271 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 330

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++
Sbjct: 331 EFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 389

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 390 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 449

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 450 LVRNLEGANQHVSKELLDL 468


>gi|45446743|ref|NP_031398.2| ATP-dependent RNA helicase DDX42 [Homo sapiens]
 gi|45446747|ref|NP_987095.1| ATP-dependent RNA helicase DDX42 [Homo sapiens]
 gi|74750541|sp|Q86XP3|DDX42_HUMAN RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42; AltName: Full=RNA helicase-like protein;
           Short=RHELP; AltName: Full=RNA helicase-related protein;
           Short=RNAHP; AltName: Full=SF3b DEAD box protein;
           AltName: Full=Splicing factor 3B-associated 125 kDa
           protein; Short=SF3b125
 gi|29420431|dbj|BAC66466.1| RNA helicase-related protein [Homo sapiens]
 gi|62205357|gb|AAH93081.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Homo sapiens]
 gi|119614683|gb|EAW94277.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_b [Homo
           sapiens]
 gi|168277556|dbj|BAG10756.1| ATP-dependent RNA helicase DDX42 [synthetic construct]
          Length = 938

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 221/379 (58%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 314 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 373

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 374 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 433

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 434 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 493

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++
Sbjct: 494 EFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 552

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 613 LVRNLEGANQHVSKELLDL 631


>gi|301612200|ref|XP_002935570.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Xenopus (Silurana)
           tropicalis]
          Length = 943

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 137/411 (33%), Positives = 224/411 (54%), Gaps = 4/411 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ P+  
Sbjct: 252 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPILV 311

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 312 HIMDQKELQPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKAL 371

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I + V   RQ
Sbjct: 372 QEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIANHVRPDRQ 431

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E I        +   K   L ++L+
Sbjct: 432 TLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQVVEILPSGPEKWTWLTRRLV 491

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   T  + +IF  +K N   L ++L +    +  +HG++DQ  R K++S+FK+ +I ++
Sbjct: 492 EFTSTG-SVLIFVTKKANAEELANNLRQDDHPLGLLHGDMDQSERNKVISDFKKKSIPVL 550

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A TL+  +D      
Sbjct: 551 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAHTLLTPKDSNFAGD 610

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKSTGFDRR 409
           + + +E    +++ +L  L         ++    + K   I     G+  R
Sbjct: 611 LVRNLEGANQYVSKELLDLAMQNSWFRKSRFKAGKGKKLNIGGGGLGYRER 661


>gi|163915660|gb|AAI57684.1| LOC100135374 protein [Xenopus (Silurana) tropicalis]
          Length = 898

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 137/411 (33%), Positives = 224/411 (54%), Gaps = 4/411 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ P+  
Sbjct: 207 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPILV 266

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 267 HIMDQKELQPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKAL 326

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I + V   RQ
Sbjct: 327 QEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIANHVRPDRQ 386

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E I        +   K   L ++L+
Sbjct: 387 TLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQVVEILPSGPEKWTWLTRRLV 446

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   T  + +IF  +K N   L ++L +    +  +HG++DQ  R K++S+FK+ +I ++
Sbjct: 447 EFTSTG-SVLIFVTKKANAEELANNLRQDDHPLGLLHGDMDQSERNKVISDFKKKSIPVL 505

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A TL+  +D      
Sbjct: 506 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAHTLLTPKDSNFAGD 565

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKSTGFDRR 409
           + + +E    +++ +L  L         ++    + K   I     G+  R
Sbjct: 566 LVRNLEGANQYVSKELLDLAMQNSWFRKSRFKAGKGKKLNIGGGGLGYRER 616


>gi|148379972|ref|YP_001254513.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153932857|ref|YP_001384271.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936987|ref|YP_001387810.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           Hall]
 gi|148289456|emb|CAL83553.1| putative ATP-dependent RNA helicase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152928901|gb|ABS34401.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932901|gb|ABS38400.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. Hall]
          Length = 376

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 143/370 (38%), Positives = 213/370 (57%), Gaps = 6/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS  ++  +     ++PTPIQ ++I L+   +DV   AQTGTGKT +F+LPM 
Sbjct: 2   IKFEELGLSDSIIDVLKKQRIIEPTPIQEESIMLIKSGNDVIAEAQTGTGKTLAFLLPMF 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      +   + LI+ PTRELA Q+ +   K  +  +L +    GG    +Q KKL+
Sbjct: 62  ENISP---DIDAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH NR  L   +++ LV+DEAD ML MGF   +++I    P  RQT
Sbjct: 119 NNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++   +++PK I +     T + I            ++       + 
Sbjct: 179 LCFSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNI---KQVLIETTDRRKQEDLCKIL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     IIFC  K+ V  L  +L K+G++   +HG+I Q  R +I+ +FK   IQ ++
Sbjct: 236 DEENPFMAIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLI 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HVFN+D+P  AE+YIHRIGRTGRAG  G  F  VA +D + +  I
Sbjct: 296 ATDVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLGMI 355

Query: 361 EKLIEKKVDW 370
           EK I+ K+  
Sbjct: 356 EKEIKFKIPR 365


>gi|161528690|ref|YP_001582516.1| DEAD/DEAH box helicase domain-containing protein [Nitrosopumilus
           maritimus SCM1]
 gi|160339991|gb|ABX13078.1| DEAD/DEAH box helicase domain protein [Nitrosopumilus maritimus
           SCM1]
          Length = 440

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 138/386 (35%), Positives = 214/386 (55%), Gaps = 11/386 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL   ++  + D G+ +  PIQ   IP++L   DV G A TG+GKTA+F L ML 
Sbjct: 3   KFQELGLKEDILKGLNDLGFEEAFPIQEAVIPVLLTGRDVVGQAHTGSGKTAAFSLSMLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LI+ PTRELA Q+ D  +K+GK   + VA + GG     Q   LER
Sbjct: 63  EIQP----KNGIQGLIMAPTRELAMQITDEIKKFGKYTGIKVATVYGGQGMGLQLDALER 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G ++++ TPGR++DH  RG + + ++  +V+DEAD MLDMGFI  I  I  L P  R   
Sbjct: 119 GVEIVVATPGRLIDHLKRGSIELRDVTHIVLDEADTMLDMGFIDDIGFILDLAPEDRVMS 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+ ++SE +L NPK+  ++    + E        +Y     +      +   
Sbjct: 179 LFSATMPTEILRLSEEYLNNPKQFLLDADDLSGEG----IDQSYLVIKDRDKFKYLIDFI 234

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T    I+FC+ K    ++   L ++ F   AI G++ Q  R + +  F+ G   ++VA
Sbjct: 235 KPTKGQAIVFCSTKYRTRDVAKFLHQEKFDAVAIEGDMSQHRREQSMGKFRSGKADILVA 294

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RG+D+P V  V N+DVPN+   Y HRIGRT RAG  GKA T V+   +   + I+
Sbjct: 295 TDVASRGIDVPRVELVINYDVPNQEMAYFHRIGRTARAGAKGKAVTFVSYSSVGDWNLIK 354

Query: 362 KLIEKKVDWLNGDLS---SLNPPLEK 384
           + I+  +  LN ++    ++  PL++
Sbjct: 355 RQIKVPIKDLNEEMGIEIAIPDPLKR 380


>gi|73996626|ref|XP_863183.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 10 [Canis familiaris]
          Length = 812

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 142/428 (33%), Positives = 208/428 (48%), Gaps = 31/428 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLL 451

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   +   P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q  +L  
Sbjct: 452 TLIEESDQG--PYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRM 509

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P + Q  
Sbjct: 510 GCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKP 569

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----------------------ETIE 218
                   E    +    ++  R  V   ++                         +  E
Sbjct: 570 DTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHE 629

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
                 +     +       +  Q      IIF NQKK    L  SLEK G++ C +HG 
Sbjct: 630 RVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGG 689

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
             Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHRIGRTGR
Sbjct: 690 KGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGR 749

Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           AG+ G A T + KED      +++ I      L   +SS  P L     AQH        
Sbjct: 750 AGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHKPGTILTK 803

Query: 399 IPQKSTGF 406
             ++ T F
Sbjct: 804 KRREETIF 811


>gi|77359594|ref|YP_339169.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76874505|emb|CAI85726.1| putative ATP-dependent RNA helicase(rhlE-like) ; DEAD-box protein
           family [Pseudoalteromonas haloplanktis TAC125]
          Length = 432

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 164/427 (38%), Positives = 238/427 (55%), Gaps = 20/427 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L P ++ A+    Y +PT IQIKTIP +L   DV G AQTGTGKTA+FVLP+L 
Sbjct: 22  TFSSLNLDPLLLTAIEQNNYTQPTAIQIKTIPPILAGSDVMGSAQTGTGKTAAFVLPLLH 81

Query: 62  ILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L     +      R +IL PTRELA QV  +FEKY +  N+  AL  GG     Q K L
Sbjct: 82  KLLNTPKKDEPGVARVVILTPTRELAQQVFASFEKYAQGTNIKGALAYGGASIGPQIKAL 141

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    + + TPGR+LDH  +G +++++++ LV DEADRMLDMGFI  I+ I   +P  RQ
Sbjct: 142 KDAQVI-VATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIKRILRHIPGDRQ 200

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  D +  +S+  L+NP+ +EV+  +S A  +E    +      ++       +
Sbjct: 201 TLLFSATFDDSVFALSKKLLKNPELVEVDKRNSAAVEVEQVIYSVDEDRKRELVSH---M 257

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  +IF   K+    L   + K G    +IHG+  Q +R + L NFKEG  +++
Sbjct: 258 IGMKNWRQVLIFTRTKQMADQLAKEMCKDGLKTESIHGDKSQGARDRALQNFKEGITRVL 317

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V NF++P  AE+Y+HRIGRTGRAG  G A +LV+ ++   ++ 
Sbjct: 318 VATDVAARGLDIPTLRFVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSIDEQWLLEE 377

Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IE L++ ++   WL G                 N   K+N      +  DR KK  + Q+
Sbjct: 378 IEVLLDTRLTPQWLAGYEPD------------PNKKPKDNRKNTNKSRKDRDKKRITGQR 425

Query: 418 SHIPLKE 424
                ++
Sbjct: 426 EPSRRRK 432


>gi|329895752|ref|ZP_08271143.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC3088]
 gi|328922182|gb|EGG29538.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC3088]
          Length = 462

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 137/365 (37%), Positives = 206/365 (56%), Gaps = 6/365 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L +SP  + ++   GY   TP+Q ++IPL+L+  D+   A+TG+GKTA+F + +L  
Sbjct: 6   FSKLNISPAQLKSLEALGYKAMTPVQEQSIPLILKGRDLVVRAKTGSGKTATFGIGLLNK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     R    + L+L PTRELA QV     +          +++  G PF AQ   L+ 
Sbjct: 66  I---NPRFFGAQALVLCPTRELADQVGAEIRRLASQMPNIKVVMLCGGKPFGAQRDSLQH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI DH  +G L ++ +  LV+DEADRMLDMGF   +Q I + VP  RQTL
Sbjct: 123 GAHVVVGTPGRIHDHLTKGTLQIDQVSTLVLDEADRMLDMGFADTMQAIIAEVPKNRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D +QK+S +   NP  ++V+   +  E +         ++ +        L  
Sbjct: 183 LFSATYPDNIQKISRSIQANPAMVQVDDDVAHEEGVIEQLFFEIKKHER--YPTLLALFE 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               KN  +FCN KK    +   L +      A+HG++DQR R ++L  F  G+  ++VA
Sbjct: 241 HYRPKNAAVFCNTKKQCAEVADFLNEHDIEAKALHGDMDQRERDQVLLQFANGSCPVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N+++P   E Y+HRIGRTGRAG  G AF+LV + +   +  IE
Sbjct: 301 TDVAARGLDIKSLAMVVNYELPRDPEIYVHRIGRTGRAGETGLAFSLVTESETPRLRQIE 360

Query: 362 KLIEK 366
           +  ++
Sbjct: 361 QYQDQ 365


>gi|71031074|ref|XP_765179.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68352135|gb|EAN32896.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 417

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 115/372 (30%), Positives = 190/372 (51%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+PIQ ++IP+ L  HD+   A+ GTGKTA+FV+P+L 
Sbjct: 45  EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALAGHDILARAKNGTGKTAAFVIPLLQ 104

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+   A+++    LIL PTRELA Q +   ++ GK   +   +  GG        +L +
Sbjct: 105 KLDTSEAQIQ---GLILLPTRELALQTSAVVKELGKYLEVQCMVSTGGTSLRNDIMRLYK 161

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L  TPGRILD  N+G  +++    +V+DEAD+ML   F P ++ +   +P  +Q +
Sbjct: 162 PVHILCGTPGRILDLTNKGVAVLSQCSTVVLDEADKMLSQEFCPIVEALLKFLPTEKQII 221

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    +Q     F +               T++           ++       L +
Sbjct: 222 LYSATFPASVQA----FKEQYLPNAHEINLMDDLTLKGITQFYAYVEERQKVHCLSTLFA 277

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + GFS   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 278 RLQINQAIIFCNSVVRVELLAKKITELGFSCFYIHAKMMQSHRNRVFHDFRNGACRCLVS 337

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D   V  V NFD P  +  Y+HRIGR+GR G  G A  LV ++D + +  IE
Sbjct: 338 SDLFTRGIDFRFVNVVVNFDFPKNSSTYLHRIGRSGRFGHLGLAINLVTEQDKEALFKIE 397

Query: 362 KLIEKKVDWLNG 373
           + +  ++  +  
Sbjct: 398 EELATEIKPIPA 409


>gi|198413641|ref|XP_002129468.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
           isoform 1 [Ciona intestinalis]
          Length = 449

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 132/406 (32%), Positives = 206/406 (50%), Gaps = 7/406 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LG+   +       G+ KP+ IQ + IP+ LQ +DV G+A+TG+GKT +F +P+L
Sbjct: 20  VTFQSLGVVDVLCETCDKLGWKKPSKIQEEAIPVALQGNDVIGLAETGSGKTGAFCIPVL 79

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE-AQNKKL 119
             L +   R+     L+L PTRELA Q+ + F+  G    +   +++GG+     Q    
Sbjct: 80  QALLENPQRLFA---LVLTPTRELAFQIEEQFKALGSAIGIKTCVVVGGVDMMGQQIILA 136

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   V+      +          + +I+ LV+DEADR+L+M F   +  I  ++P  R+
Sbjct: 137 KKPHVVVATPGRLVDHLEKTKGFTLRSIKFLVLDEADRILNMDFESELDTILKVIPRERR 196

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT +++K+    L  P +  VN    T + +   F       SK        +
Sbjct: 197 TFLFSATMTGKVKKLQRAALTKPVKCAVNNKYHTVDKL---FQYYLFLPSKDKDCYLAAV 253

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      IIFC    N       L   G S   +HG + Q  R+  L+ FK  T  ++
Sbjct: 254 VNELAGNAMIIFCGTCANTQRTALILRNLGISAVPLHGQMSQAKRLGALNKFKSATKSIL 313

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDIP V  V N DVP R+++YIHR+GRT RAGR GK+ T V + D++    
Sbjct: 314 VATDVASRGLDIPHVDVVINMDVPARSKDYIHRVGRTARAGRFGKSVTFVTQYDVELYQR 373

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           IE+LI KK+     + + +    E++  AQ     +      K  G
Sbjct: 374 IEELIGKKLPEYEMEHNEVKVLQERVAEAQRLARLEMKERGSKKRG 419


>gi|289740253|gb|ADD18874.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
          Length = 692

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 122/389 (31%), Positives = 204/389 (52%), Gaps = 5/389 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P ++  V   G+  P+PIQ +  P++L+  D+ GIAQTGTGKT +F+LP L  +E     
Sbjct: 285 PDLLDEVTKQGFQTPSPIQSQAWPILLKGEDMIGIAQTGTGKTLAFLLPALIHIEYQSIP 344

Query: 70  VRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
                 P  LIL PT    A   +          +    + GG     Q + + RG +V+
Sbjct: 345 RSQRGGPNVLILAPT-RELALQIEKEVNKYSFRGIKAVCIYGGGNRNDQIQNVGRGVEVI 403

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           ICTPGR+ D      + +  +  LV+DEADRMLDMGF P I+ +   +   RQT++ SAT
Sbjct: 404 ICTPGRLNDLVQANVIDVTTVTYLVLDEADRMLDMGFEPQIRKVLLDIRPDRQTIMTSAT 463

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
               +++++++++ NP ++ V +    A       V    +  K   ++++ +++     
Sbjct: 464 WPPGVRRLAQSYMSNPIQVCVGSLDLAATHSVRQVVEVVEEDDK-FYMIKKFIKNMQPDD 522

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+FC +K    +L   L   GF   AIHG+ DQ  R + +++   G +++++A+D+A+
Sbjct: 523 KLIVFCGKKVRADDLSSDLTLDGFLCQAIHGSRDQADREQAIADITSGDVRILIATDVAS 582

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI D+ HV NFD P   E Y+HR+GRTGRAGR G + + + + D      + K++E+
Sbjct: 583 RGLDIDDITHVINFDFPRNIEEYVHRVGRTGRAGRTGTSISYLTRSDWAMAPELIKIMEE 642

Query: 367 KVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
               +  +L  +     K+   + +   K
Sbjct: 643 ADQQVPDELIDMAERYNKMKERRSDEMSK 671


>gi|256832539|ref|YP_003161266.1| DEAD/DEAH box helicase domain-containing protein [Jonesia
           denitrificans DSM 20603]
 gi|256686070|gb|ACV08963.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM
           20603]
          Length = 657

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 133/373 (35%), Positives = 214/373 (57%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L  ++  AV D G+  P+ IQ + IP++ +  D+ GIAQTGTGKTA+F +P+L
Sbjct: 49  LTFADLNLPNQIQRAVDDLGFTVPSKIQQQAIPVLFEGRDITGIAQTGTGKTAAFGIPLL 108

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++    +V+    L+L PTRELA QV++  E + ++      L +  G P+  Q + L
Sbjct: 109 ASIDTSVRQVQ---ALVLAPTRELAIQVSEAIESFARHMPGLETLAVYGGSPYPPQIRAL 165

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  V++ TPGR++DH  RG L ++ +  LV+DEAD ML MGF   ++ + S  P  RQ
Sbjct: 166 KTGVHVVVGTPGRVIDHIERGTLDLSQVRFLVLDEADEMLRMGFADDVEKVFSETPADRQ 225

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   +++V++  L NP  I V   S+T   I+  +        +        +
Sbjct: 226 VALFSATMPPAIRRVAQRHLTNPVEIAVARQSTTVTAIDQEYAVVPF---RHKTGSLYRV 282

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +   ++  I+FC  +     +  +L ++G S   I G++ Q+ R KI+   + G + ++
Sbjct: 283 LATSDVEAAIVFCRTRGAAEEVGAALIERGVSAATISGDVPQKDREKIVERLRNGQLDVL 342

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +G V NFD+P   E Y+HRIGRTGRAGR G+A + +   +   + +
Sbjct: 343 VATDVAARGLDVDRIGLVVNFDIPGEPEAYVHRIGRTGRAGRQGRALSFITPAERGKLRS 402

Query: 360 IEKLIEKKVDWLN 372
           IE+ I  ++  + 
Sbjct: 403 IERTIRTELKEIP 415


>gi|323508819|dbj|BAJ77303.1| cgd4_3180 [Cryptosporidium parvum]
 gi|323510507|dbj|BAJ78147.1| cgd4_3180 [Cryptosporidium parvum]
          Length = 441

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 206/371 (55%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LG+  ++  A    G+  PT IQ KTIP+ L+  D+ G+A+TG+GKT SF++P+L
Sbjct: 28  VTFASLGVCKELCIACESLGWKTPTEIQKKTIPVALEGRDIIGLAETGSGKTGSFIIPIL 87

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   +        +IL PTREL  Q+++ F  +G   +L +A L+GG+    Q+  L 
Sbjct: 88  QRLLDDQ---VPMYAVILAPTRELCVQISEQFSAFGSLISLKIATLVGGLDMVMQSLSLA 144

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   +++ +PGR++DH  N     +  I+ LV+DEADR+L M F   +  I    P  R 
Sbjct: 145 KKPHIIVASPGRLVDHLENTKGFNIGGIKFLVMDEADRLLSMDFEIALNKIVESSPRNRT 204

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT ++ K+ +  L NP +I VNT   TA  +   ++       K        +
Sbjct: 205 TYLFSATMTTKVAKLQKISLSNPIKICVNTKYDTAANLMQYYMFIPF---KYKWSYFIGM 261

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFCN   N        ++ GF+  ++HG + Q  R+  L+ FK    +L+
Sbjct: 262 LQNLGQYTGIIFCNTCINCRRGDLLAKELGFNSISLHGRMSQSQRLSALNLFKGKQKRLL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
             +++ +RGLDIP V  V NFD+P  +++Y+HR+GRT RAGR G+A ++V + D++    
Sbjct: 322 FTTEVGSRGLDIPHVDFVINFDIPTSSKDYVHRVGRTARAGRSGRAISMVTQYDVETFQR 381

Query: 360 IEKLIEKKVDW 370
           IE  + +K+D 
Sbjct: 382 IEFALNRKLDE 392


>gi|313231677|emb|CBY08790.1| unnamed protein product [Oikopleura dioica]
          Length = 863

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 124/414 (29%), Positives = 211/414 (50%), Gaps = 5/414 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G   +++  +   G++ PTPIQ   IP +L   DV GIAQTG+GKTA FV P++ 
Sbjct: 230 SFGHMGFPDRLLERIRKVGFLDPTPIQSTAIPQILAGRDVIGIAQTGSGKTAGFVWPIIY 289

Query: 62  ILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
            + K R       P  LI+ PTREL  Q+     K+ KNY+   V +  GG+    Q K+
Sbjct: 290 HVTKQRPLKYGDGPMALIMAPTRELCQQLYAEVRKFAKNYDSFRVGICFGGVNMYEQGKE 349

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G ++L+ TPGR++DH  +G   ++   I+ +DEADRML++GF P +++I + V   +
Sbjct: 350 LKMGVEILVATPGRLIDHVKKGNTELSKCTIICLDEADRMLELGFEPQVRSICNHVRPDK 409

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L FSAT    +++++   L +P ++         E              +K   L   
Sbjct: 410 QCLFFSATFKKVIERLATEVLNDPVKLTQGQIGQVNEN--VTQTFKILGQDQKLQWLLNN 467

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   +++ + ++F  +K + V +   L+K G+    IHG++ Q  R  ++  FK+  +  
Sbjct: 468 IVQLNSVGSLLVFVTRKADCVTVHEELKKSGYKTGVIHGDMHQAERNDVIKAFKKQQLAT 527

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLDI  +  V N+D     + ++HR+GRT RAG  G A +L+  +D ++  
Sbjct: 528 LIATDVAARGLDISHIKTVINYDPARNYDTHVHRVGRTARAGNTGTAISLLTPQDSEYAG 587

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            + + IE     +  ++  L        + +    +          GF   K N
Sbjct: 588 IVLRSIETTKQPVPDEMLRLAMKDSSFRMTRGKDGKNIGYSDNDRGGFGSGKAN 641


>gi|297824637|ref|XP_002880201.1| hypothetical protein ARALYDRAFT_483719 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297326040|gb|EFH56460.1| hypothetical protein ARALYDRAFT_483719 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 521

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 112/372 (30%), Positives = 183/372 (49%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L   ++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGKT +F +P L 
Sbjct: 148 EFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLE 207

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++       + + +IL PTRELA Q +   ++  K   + V +  GG        +L +
Sbjct: 208 KIDP---ENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQ 264

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L + F P I+ +   +P  RQ L
Sbjct: 265 PVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPENRQIL 324

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++     F     R           T+            ++       L S
Sbjct: 325 MFSATFPVTVKS----FKDRYLRKPYIINLMDQLTLMGVTQYYAFVEERQKVHCLNTLFS 380

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 381 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVC 440

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E+Y+HR+GR+GR G  G A  LV  ED   +   E
Sbjct: 441 TDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTE 500

Query: 362 KLIEKKVDWLNG 373
           + +  ++  +  
Sbjct: 501 QELGTEIKPIPS 512


>gi|73996624|ref|XP_863165.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 9 [Canis familiaris]
          Length = 811

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 142/428 (33%), Positives = 209/428 (48%), Gaps = 32/428 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +E+     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q  +L  
Sbjct: 452 KIEESD---QGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRM 508

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P + Q  
Sbjct: 509 GCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKP 568

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----------------------ETIE 218
                   E    +    ++  R  V   ++                         +  E
Sbjct: 569 DTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHE 628

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
                 +     +       +  Q      IIF NQKK    L  SLEK G++ C +HG 
Sbjct: 629 RVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGG 688

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
             Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHRIGRTGR
Sbjct: 689 KGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGR 748

Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           AG+ G A T + KED      +++ I      L   +SS  P L     AQH        
Sbjct: 749 AGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHKPGTILTK 802

Query: 399 IPQKSTGF 406
             ++ T F
Sbjct: 803 KRREETIF 810


>gi|66357446|ref|XP_625901.1| Rrp3p, eIF4A-1-family RNA SFII helicase (DEXDc+HELICc)
           [Cryptosporidium parvum Iowa II]
 gi|46226956|gb|EAK87922.1| Rrp3p, eIF4A-1-family RNA SFII helicase (DEXDc+HELICc)
           [Cryptosporidium parvum Iowa II]
          Length = 446

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 206/371 (55%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LG+  ++  A    G+  PT IQ KTIP+ L+  D+ G+A+TG+GKT SF++P+L
Sbjct: 33  VTFASLGVCKELCIACESLGWKTPTEIQKKTIPVALEGRDIIGLAETGSGKTGSFIIPIL 92

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   +        +IL PTREL  Q+++ F  +G   +L +A L+GG+    Q+  L 
Sbjct: 93  QRLLDDQ---VPMYAVILAPTRELCVQISEQFSAFGSLISLKIATLVGGLDMVMQSLSLA 149

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   +++ +PGR++DH  N     +  I+ LV+DEADR+L M F   +  I    P  R 
Sbjct: 150 KKPHIIVASPGRLVDHLENTKGFNIGGIKFLVMDEADRLLSMDFEIALNKIVESSPRNRT 209

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT ++ K+ +  L NP +I VNT   TA  +   ++       K        +
Sbjct: 210 TYLFSATMTTKVAKLQKISLSNPIKICVNTKYDTAANLMQYYMFIPF---KYKWSYFIGM 266

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFCN   N        ++ GF+  ++HG + Q  R+  L+ FK    +L+
Sbjct: 267 LQNLGQYTGIIFCNTCINCRRGDLLAKELGFNSISLHGRMSQSQRLSALNLFKGKQKRLL 326

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
             +++ +RGLDIP V  V NFD+P  +++Y+HR+GRT RAGR G+A ++V + D++    
Sbjct: 327 FTTEVGSRGLDIPHVDFVINFDIPTSSKDYVHRVGRTARAGRSGRAISMVTQYDVETFQR 386

Query: 360 IEKLIEKKVDW 370
           IE  + +K+D 
Sbjct: 387 IEFALNRKLDE 397


>gi|171910495|ref|ZP_02925965.1| DEAD/DEAH box helicase-like protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 673

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 142/367 (38%), Positives = 218/367 (59%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL+P ++ A+   G+ +P+PIQ K IP  L+  DV G +QTG+GKT +F +P++  
Sbjct: 47  FTELGLAPDILKAMTALGFEQPSPIQEKGIPPALEGRDVVGQSQTGSGKTMAFAIPVVQK 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    R R  R LI+ PTRELA QV +   K   +     AL I  G  ++ Q + L  
Sbjct: 107 IDP---RDRGVRALIMCPTRELAMQVCEEVAKLTVHKPGLKALPIYGGATYDRQIRGLRD 163

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRILD   RG L ++ ++ LV DEAD MLDMGF   I ++ +LVP  RQTL
Sbjct: 164 GAQIVVGTPGRILDFLERGMLRLDALQTLVFDEADEMLDMGFREDIDSLMALVPENRQTL 223

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT+   ++ + E++ +N   I   T    A T+       Y   S+    +   L  
Sbjct: 224 FFSATLAGPIRHLVESYTKNAALI---TIEHKALTVPTIEQRYYEVNSRSKIEVLCRLLD 280

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  I+F N KK V ++  +L  + + V  +HG+++Q  R +++ NF+ G ++++ A
Sbjct: 281 IENPRLAIVFANTKKAVDDITDALMARSYGVDRLHGDLNQTMRDRVMKNFRAGNVEVLAA 340

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ DV  V NFD+P   E+Y+HRIGRTGRAGR GKA +LV+  DI  +  I+
Sbjct: 341 TDVAARGLDVDDVDLVVNFDLPYDEEDYVHRIGRTGRAGRSGKAMSLVSGRDIFLLQRIQ 400

Query: 362 KLIEKKV 368
           +  +  +
Sbjct: 401 RYAKVNI 407


>gi|164428960|ref|XP_001728501.1| hypothetical protein NCU11175 [Neurospora crassa OR74A]
 gi|157072353|gb|EDO65410.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 857

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 155/472 (32%), Positives = 236/472 (50%), Gaps = 9/472 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ LS  ++  +   G+ KPTPIQ KTIP+ L   DV G A TG+GKTA+FV+P+L 
Sbjct: 294 SFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVPILE 353

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R +IL PTRELA Q      K   + ++   L +GG+  + Q  +L  
Sbjct: 354 RLLYRPKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSLKVQEAELRL 413

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ IEILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 414 RPDVVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLEDGFADELNEILTTLPKSRQT 473

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT  + ++    L  P RI  ++   TA T+   FV        K       + 
Sbjct: 474 MLFSATMTSSVDRLIRAGLNKPVRIMADSQKKTAGTLVQEFVRLRPGRESKREGYLLHIC 533

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  IIF  QKK    +       G S   +HG+++Q  R++ + +F++G +  ++
Sbjct: 534 KTIYTERVIIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQAQRIQSVEDFRDGKVNFLL 593

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G A TL A+ D K + A 
Sbjct: 594 ATDLASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAA 653

Query: 361 EKLIEKK--------VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            K  + +        +D  + D         + +I +     K     Q      ++ +N
Sbjct: 654 VKAGKSQGAKISSRIIDPADADKWQAEIDELEDEIEEIMQEEKEEKQLQNMEMQVKKGEN 713

Query: 413 YSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
               +  I  +      + Q+D ++  A        +   +  KN GKL++K
Sbjct: 714 MIKYEDEISSRPKRTWFETQEDKKKAKAAGRAELNGVRDKLKSKNEGKLSNK 765


>gi|49072840|gb|AAT51707.1| DEAD box RNA helicase [Choristoneura fumiferana]
          Length = 1012

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 138/447 (30%), Positives = 230/447 (51%), Gaps = 15/447 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+S K +  +    + KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 352 TWAHCGVSKKEMDILKKLNFEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 411

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P +LI+ PTREL  Q+  +  K+ K+  L V  + GG     Q  +L
Sbjct: 412 HVLDQSPLEDTDGPISLIMTPTRELCMQIGKDIRKFAKSLGLRVVCVYGGTGISEQIAEL 471

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   +  
Sbjct: 472 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVSYIVLDEADRMFDMGFEPQVMKIIDNIRP 531

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   LQ P  I+V   S   +           +   K   L 
Sbjct: 532 DRQTVMFSATFPRQMEALARRILQKPIEIQVGGRSVVCKD--VEQHVAILEDDAKFFKLL 589

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL     + + I+F ++++N  +L   L K  +S  ++HG IDQ  R   + +FK G +
Sbjct: 590 ELLGLYSQLGSIIVFVDKQENADSLLKDLMKASYSCMSLHGGIDQFDRDSTIVDFKNGKV 649

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L+VA+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  E  ++
Sbjct: 650 KLLVATSVAARGLDVKQLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAWTFLTPEQGRY 709

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              + + +E     +   L +L    +    AQ    +K +     S    +  ++ +  
Sbjct: 710 AGDVLRAMELSGAVVPPTLRAL---WDSYKDAQEKDGKKVHTGGGFSGKGFKFDESEAQA 766

Query: 417 KSHIPLKESEKISKLQQDIQENDADSL 443
                  E +K  K    +Q++D + +
Sbjct: 767 -----ATEKKKYQKAALGLQDSDDEDV 788


>gi|78486222|ref|YP_392147.1| DEAD/DEAH box helicase-like [Thiomicrospira crunogena XCL-2]
 gi|78364508|gb|ABB42473.1| ATP-dependent RNA helicase [Thiomicrospira crunogena XCL-2]
          Length = 401

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 148/381 (38%), Positives = 222/381 (58%), Gaps = 5/381 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L PK++ A+ +  Y KPTPIQ + IP +L   DV   A TGTGKTA+FVLP L
Sbjct: 1   MTFEELDLDPKLLTAIEEQHYHKPTPIQAEAIPEMLLSKDVLAGAATGTGKTAAFVLPAL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L       R PR LIL PTRELA Q+    ++ G +      ++ GG   + Q + L+
Sbjct: 61  QFLLDDPRPSRKPRVLILAPTRELAFQIHKVVKQLGAHCPFESNVVTGGFASDKQLEILQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+L+ TPGR+L+  ++  + +++IE+L+IDEADRMLDMG  P +  +   +P   Q 
Sbjct: 121 SKIDILVATPGRLLNIMSKEFIDLSDIELLIIDEADRMLDMGQGPDVLALIEAIPGDFQA 180

Query: 181 LLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             FSAT+    + K +E  L +P+ I+VN P+  +E I+        +  KK   L + +
Sbjct: 181 ACFSATLAGSGITKFAEEVLDSPEIIQVNAPNEKSEQIQQWVYLANDKAHKKA--LLKAI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +T ++ I+FCN+K   + L   L+ +  S   +HG+  Q  R++    FK+G I+++
Sbjct: 239 LEDETCQSAIVFCNKKDRAIELADWLQNEHISSTVLHGDFIQAKRLEKTQKFKQGKIKVL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI +V HV N+DVP R + YIHRIGRTGRA + G A  LV + DI ++  
Sbjct: 299 VATDVAARGLDILNVTHVINYDVPYRGDIYIHRIGRTGRAQQVGIAINLVERHDITNLQR 358

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           IE  +++ +      +  L P
Sbjct: 359 IEYHLQQSLPV--SKIKGLEP 377


>gi|73996628|ref|XP_863206.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 11 [Canis familiaris]
          Length = 811

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 142/428 (33%), Positives = 210/428 (49%), Gaps = 32/428 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L+
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLS 451

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +E+     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q  +L  
Sbjct: 452 GIEESD---QGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRM 508

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P + Q  
Sbjct: 509 GCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKP 568

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----------------------ETIE 218
                   E    +    ++  R  V   ++                         +  E
Sbjct: 569 DTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHE 628

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
                 +     +       +  Q      IIF NQKK    L  SLEK G++ C +HG 
Sbjct: 629 RVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGG 688

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
             Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHRIGRTGR
Sbjct: 689 KGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGR 748

Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           AG+ G A T + KED      +++ I      L   +SS  P L     AQH        
Sbjct: 749 AGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHKPGTILTK 802

Query: 399 IPQKSTGF 406
             ++ T F
Sbjct: 803 KRREETIF 810


>gi|332139978|ref|YP_004425716.1| ATP-dependent RNA helicase RhlB [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550000|gb|AEA96718.1| ATP-dependent RNA helicase RhlB [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 429

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 126/381 (33%), Positives = 207/381 (54%), Gaps = 6/381 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL ++ KVV A+  A +   TPIQ   +P +L+ HD+ G AQTGTGKT +F++     
Sbjct: 10  FSDLPINGKVVDALAAANFSHCTPIQALALPPLLEGHDIAGQAQTGTGKTIAFLVATFHY 69

Query: 63  -----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                     ++   PR +I+ PTRELA Q+ ++ +   ++  L++ L+ GG  +++Q +
Sbjct: 70  LLSKAENADNSKSNGPRAIIMAPTRELAVQIYNDAKLLSEHTGLSLGLIYGGEGYQSQRE 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D++I T GRILD++ +    + NI++ V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 TLEEGVDIIIGTTGRILDYYKQNVFSLKNIQVAVLDEADRMFDLGFIKDIRFLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T   +     +        V        T        +        LL  
Sbjct: 190 GERLSMLFSATLSYRVQELAYEHMNNPTHVQVAPEQT-TATRVSQELFYPSDDDKMLLLL 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++  +  I+F N K +   +   L   G  V  + G++ Q+ R+ IL +F +G + 
Sbjct: 249 TLLEEEWPEKAIVFANTKHSCEKVTDWLTADGHRVGLLSGDVPQKKRLGILEDFTKGKLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL I  V HVFN+D+P+ AE+Y+HRIGRTGRAG+ G A +   ++   ++
Sbjct: 309 VLVATDVAARGLHIDAVTHVFNYDLPDDAEDYVHRIGRTGRAGQSGIAISFACEKYALNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
            AIE+ I+  +   + D S+L
Sbjct: 369 PAIEQYIQNAIPVTDYDSSAL 389


>gi|320038882|gb|EFW20817.1| ATP-dependent RNA helicase DRS1 [Coccidioides posadasii str.
           Silveira]
          Length = 840

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 146/454 (32%), Positives = 221/454 (48%), Gaps = 24/454 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  LS  ++  +   G+  PTPIQ K IP+ L   D+ G A TG+GKTA+F++P+L 
Sbjct: 320 TFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPIGLLGKDLVGGAVTGSGKTAAFIIPILE 379

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++
Sbjct: 380 RLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKQ 439

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 440 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILNTIPKSRQT 499

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTD + K+    L  P R+ V++   T  T+   FV        K      LL 
Sbjct: 500 MLFSATMTDSVDKLIRVGLNRPVRLMVDSKKHTVGTLVQEFVRLRPGREGKRMGYLVLLC 559

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       I+F  QKK            G     +HG++ Q  R+  +  F++G +  ++
Sbjct: 560 NTIYTNRVIVFFRQKKEAHRARIIFGLLGLKAAELHGSMSQEQRINAVEAFRDGKVPFLL 619

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + A 
Sbjct: 620 ATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAA 679

Query: 361 EKLIE--------------------KKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNN 397
            K                        KV+ +  ++  +       +++  A+    R  N
Sbjct: 680 AKAGRAQGAKIVSRVVDPAVADEWASKVEEMQAEIEDILKEEKEEKQLAQAEMQVKRGQN 739

Query: 398 PIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKL 431
            I  +S    R K+ +   +      +   +S+L
Sbjct: 740 LIKHESEIMARPKRTWFETEREKREAKKRALSEL 773


>gi|321468350|gb|EFX79335.1| hypothetical protein DAPPUDRAFT_244975 [Daphnia pulex]
          Length = 450

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 109/376 (28%), Positives = 184/376 (48%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L  +++  + + G+  P+PIQ   IP+ L   ++   A+ GTGKT ++ +P+L 
Sbjct: 65  SFEDFCLKRELLMGIFEKGWETPSPIQEVGIPMALTGRNILARAKNGTGKTGAYCIPVLE 124

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       +  + LI+ PTRELA Q +    +  K+ ++ + +  GG   +    ++  
Sbjct: 125 QVVPSE---QHIQALIVVPTRELALQTSQICIELAKHLDIRIMVTTGGTDLKDDIMRIFG 181

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LD   +   +M+  ++LV+DEAD++L   F+  +  I S +P  RQ L
Sbjct: 182 KVHVVIATPGRVLDLMEKKIAVMDRCKVLVLDEADKLLSQDFMGMLDRIISFLPAKRQIL 241

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    +++    F++               T++           ++       L S
Sbjct: 242 LYSATFPVTVEE----FMRKHIDNPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFS 297

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 298 KLQINQSIIFCNSTQRVELLAKKITELGYSCYYIHARMQQAHRNRVFHDFRNGLCRNLVC 357

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  IE
Sbjct: 358 SDLFTRGIDIQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRFALHRIE 417

Query: 362 KLIEKKVDWLNGDLSS 377
             +  ++  +   +  
Sbjct: 418 SELSTEIKPIPKVIDK 433


>gi|190405946|gb|EDV09213.1| dead box protein [Saccharomyces cerevisiae RM11-1a]
          Length = 431

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 126/430 (29%), Positives = 205/430 (47%), Gaps = 21/430 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGLS  +  ++      +PT IQ   IP +L+  D  G A+TG+GKT +F  PMLT
Sbjct: 3   DFKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +          ++L PTRELA Q+A+ F   G + N+ V++++GG     Q   L+R
Sbjct: 63  KWSE---DPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQR 119

Query: 122 GADVLICTPGRILDHFNRGKLLM----NNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
               +I TPGR+  H               + LV+DEAD +L   F  ++    S +P  
Sbjct: 120 KPHFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPK 179

Query: 178 RQTLL--FSATMTDELQ-----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +     F+AT+TD+++      V +           +  +    +          ++ K
Sbjct: 180 DKRQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHVK 239

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L Q L   +   K  IIF N+      L  +L++    V ++H  + Q+ R   L  
Sbjct: 240 EAYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHR 299

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+    + ++A+D+A+RGLDIP V  V N+D+P+  + +IHR GRT RAGR G A + V 
Sbjct: 300 FRANAARTLIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVT 359

Query: 351 KEDIKHIDAIEKLIEKKVDWLNG--DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           + D+  I AIE  I KK+   N   D + +   L K+       A++ + +  +   F  
Sbjct: 360 QRDVSRIQAIEDRINKKMTETNKVHDTAVIRKALTKV-----TKAKRESLMAMQKENFGE 414

Query: 409 RKKNYSSQKS 418
           RK+    +++
Sbjct: 415 RKRQQKKKQN 424


>gi|256860906|gb|ACV32355.1| vasa [Nibea mitsukurii]
          Length = 640

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 132/431 (30%), Positives = 216/431 (50%), Gaps = 31/431 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +  AV  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 202 MTFEEATLCESLRKAVAKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 261

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + ++ P  LI+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 262 QQLMADGVAASSFSELQEPEVLIVAPTRELINQIYMEARKFSYGTCVRPVVVYGGVSTGY 321

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
           Q +++ RG +VL  TPGR+LD   RGK+ ++ +   V+DEADRMLDMGF P ++      
Sbjct: 322 QIREISRGCNVLCGTPGRLLDVIGRGKIGLSKLRYFVLDEADRMLDMGFEPDMRRLVGSP 381

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++Q+++ +FL+             A +          ++SK
Sbjct: 382 GMPTKEHRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFVQVTKFSK 441

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +       L      +  ++F   K+    +   L ++     +IHG+ +QR R + L++
Sbjct: 442 RE--QLLDLLKTTGTERTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQREREQALAD 499

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLD+PDV +V +FD+PN  + Y+HRIGRTGR G  G+A +   
Sbjct: 500 FRSGKCPVLVATSVAARGLDVPDVLNVVSFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYD 559

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            + D +   ++  ++ K    +   L      +                      GF+  
Sbjct: 560 PDADGQLARSLVTILSKAQQEVPSWLEEYAFSV------------------PGDAGFNSS 601

Query: 410 KKNYSSQKSHI 420
           K+N++S  S  
Sbjct: 602 KRNFASSDSRK 612


>gi|146292357|ref|YP_001182781.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145564047|gb|ABP74982.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 481

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 152/479 (31%), Positives = 237/479 (49%), Gaps = 25/479 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           M F  LGLS  ++ A+ + GY + T +Q K IPL  +  D+   AQTGTGKTA+F LP  
Sbjct: 1   MKFETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTAAFALPVL 60

Query: 59  ---MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                 IL        + R L++ PTRELA QV DN +KY +   L    + GG     Q
Sbjct: 61  EKLAAEILVNDDNDKPILRALVMTPTRELAIQVCDNIQKYSQFLPLKTIAVYGGANMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K +E+G D+L+ TPGR+ D   + +L ++++  LVIDEADRMLDMGF+  I+ +  L+ 
Sbjct: 121 RKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKRLIA 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              QT+LFSAT +D +++      Q           +   T        Y    ++ A L
Sbjct: 181 PVHQTMLFSATYSDAVKQ----LAQKMLNEPQWVNVADTTTASTVVQEVYRVDKRRKAEL 236

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L  ++  +  ++F + K++  +L   L+  G +    HG+  Q +R ++L +FK G 
Sbjct: 237 LSELVGRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEDFKLGK 296

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGLDI  +  V N ++P  AE+YIHRIGRTGRAG  G+A + V+  D +
Sbjct: 297 LRVLVATDVAARGLDIQALPLVINLELPFFAEDYIHRIGRTGRAGLAGRAISFVSPSDDE 356

Query: 356 HIDAIEKLIEKKVDW-----------LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
            +  IE LIE+K+             L      +  P      A+ ++    +    KS+
Sbjct: 357 MLAEIEALIEQKLPVSVQSGYEEGTPLPARYRDI--PASPTKPAKWSYKAPKDRAIGKSS 414

Query: 405 GFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
               R +    + +   ++ES          + + A+  G  G       PK       
Sbjct: 415 ESQARSRQNIGRDA---MRESPTREGKYAKDKAHGAEGKGSAGKPFNTTKPKPHSGSRS 470


>gi|6321963|ref|NP_012039.1| Dbp8p [Saccharomyces cerevisiae S288c]
 gi|731740|sp|P38719|DBP8_YEAST RecName: Full=ATP-dependent RNA helicase DBP8; AltName: Full=DEAD
           box protein 8
 gi|160380633|sp|A6ZT77|DBP8_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP8; AltName: Full=DEAD
           box protein 8
 gi|458901|gb|AAB68014.1| Yhr169wp [Saccharomyces cerevisiae]
 gi|151944115|gb|EDN62408.1| DEAD box protein [Saccharomyces cerevisiae YJM789]
 gi|207344531|gb|EDZ71646.1| YHR169Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256273978|gb|EEU08896.1| Dbp8p [Saccharomyces cerevisiae JAY291]
 gi|259146927|emb|CAY80183.1| Dbp8p [Saccharomyces cerevisiae EC1118]
 gi|285810075|tpg|DAA06862.1| TPA: Dbp8p [Saccharomyces cerevisiae S288c]
 gi|323308784|gb|EGA62022.1| Dbp8p [Saccharomyces cerevisiae FostersO]
 gi|323337360|gb|EGA78613.1| Dbp8p [Saccharomyces cerevisiae Vin13]
 gi|323348321|gb|EGA82570.1| Dbp8p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323354703|gb|EGA86538.1| Dbp8p [Saccharomyces cerevisiae VL3]
          Length = 431

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 126/430 (29%), Positives = 206/430 (47%), Gaps = 21/430 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGLS  +  ++      +PT IQ   IP +L+  D  G A+TG+GKT +F  PMLT
Sbjct: 3   DFKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +          ++L PTRELA Q+A+ F   G + N+ V++++GG     Q   L+R
Sbjct: 63  KWSE---DPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQR 119

Query: 122 GADVLICTPGRILDHFNRGKLLM----NNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
               +I TPGR+  H               + LV+DEAD +L   F  ++    S +P  
Sbjct: 120 KPHFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPK 179

Query: 178 RQTLL--FSATMTDELQ-----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +     F+AT+TD+++      V +           +  +    +          ++ K
Sbjct: 180 DKRQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHVK 239

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L Q L   +   K  IIF N+      L  +L++    V ++H  + Q+ R   L  
Sbjct: 240 EAYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHR 299

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+    ++++A+D+A+RGLDIP V  V N+D+P+  + +IHR GRT RAGR G A + V 
Sbjct: 300 FRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVT 359

Query: 351 KEDIKHIDAIEKLIEKKVDWLNG--DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           + D+  I AIE  I KK+   N   D + +   L K+       A++ + +  +   F  
Sbjct: 360 QRDVSRIQAIEDRINKKMTETNKVHDTAVIRKALTKV-----TKAKRESLMAMQKENFGE 414

Query: 409 RKKNYSSQKS 418
           RK+    +++
Sbjct: 415 RKRQQKKKQN 424


>gi|323333197|gb|EGA74596.1| Dbp8p [Saccharomyces cerevisiae AWRI796]
          Length = 431

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 126/430 (29%), Positives = 206/430 (47%), Gaps = 21/430 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGLS  +  ++      +PT IQ   IP +L+  D  G A+TG+GKT +F  PMLT
Sbjct: 3   DFKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +          ++L PTRELA Q+A+ F   G + N+ V++++GG     Q   L+R
Sbjct: 63  KWSE---DPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQR 119

Query: 122 GADVLICTPGRILDHFNRGKLLM----NNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
               +I TPGR+  H               + LV+DEAD +L   F  ++    S +P  
Sbjct: 120 KPHFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPK 179

Query: 178 RQTLL--FSATMTDELQ-----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +     F+AT+TD+++      V +           +  +    +          ++ K
Sbjct: 180 DKRQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHVK 239

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L Q L   +   K  IIF N+      L  +L++    V ++H  + Q+ R   L  
Sbjct: 240 EAYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHR 299

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+    ++++A+D+A+RGLDIP V  V N+D+P+  + +IHR GRT RAGR G A + V 
Sbjct: 300 FRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVT 359

Query: 351 KEDIKHIDAIEKLIEKKVDWLNG--DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           + D+  I AIE  I KK+   N   D + +   L K+       A++ + +  +   F  
Sbjct: 360 QRDVSRIQAIEDRINKKMTEANKVHDTAVIRKALTKV-----TKAKRESLMAMQKENFGE 414

Query: 409 RKKNYSSQKS 418
           RK+    +++
Sbjct: 415 RKRQQKKKQN 424


>gi|15678231|ref|NP_275346.1| EIF-4a family ATP-dependent RNA helicase [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2621248|gb|AAB84709.1| ATP-dependent RNA helicase, eIF-4A family [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 425

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 143/383 (37%), Positives = 220/383 (57%), Gaps = 14/383 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F++  +S  +  A+ D G+   TPIQ  T+P+ L   DV G AQTGTGKTA+F +P+L
Sbjct: 4   LEFSEFDISGDINRALDDMGFESTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFAIPVL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE  R     P+ LI+ PTREL  QV++  ++ GK   + V  + GG     Q  +L 
Sbjct: 64  ENLEAERV----PQALIICPTRELCLQVSEEIKRIGKYMKVKVLAVYGGQSIGNQIAQLR 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG + +  I  +V+DEAD ML+MGFI  I+ I S VP  RQT
Sbjct: 120 RGVHVIVATPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPERRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT++  + +++  +++NP+           +         +    +    L   + 
Sbjct: 180 MLFSATVSKPILRIARKYMRNPQ-----VMRVEKKHSPKIDEFYFKTREEDKVELLDWIL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S + ++ G+IFCN K+ V  L   L + G+S   IHG++ Q  R +++  F+ G   L+V
Sbjct: 235 SSNNIRMGLIFCNTKRRVQRLRRQLNRMGYSADEIHGDLSQSKRERVMERFRRGDFSLLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ +PDV  V N+D+P   E Y+HRIGRTGRAG  GK+FTLV   ++  +  I
Sbjct: 295 ATDVAARGIHVPDVEAVVNYDLPFENEYYVHRIGRTGRAGSSGKSFTLVVGSEVHRLRRI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           +    K++       S++  P E
Sbjct: 355 QSFTGKRIKQ-----SNMPSPEE 372


>gi|289550671|ref|YP_003471575.1| ATP-dependent RNA helicase YqfR [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180203|gb|ADC87448.1| ATP-dependent RNA helicase YqfR [Staphylococcus lugdunensis
           HKU09-01]
          Length = 461

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 140/450 (31%), Positives = 216/450 (48%), Gaps = 15/450 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ A+ D  + KPT IQ + IP +L+R ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FETFNLESTMLDAIKDLNFEKPTEIQNRIIPKILKRTNLIGQSQTGTGKSHAFLLPLMHL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           ++        P+ +++ PTRELA Q+    +   +   N+ V+L IGG   E   ++   
Sbjct: 66  IDIDLQE---PQVIVVAPTRELAQQLYQATQHLAQFKSNVKVSLFIGGTDIEKDKQRTHI 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
               +I TP RI D    G L ++    L+IDEAD M+D+G I  +  I + +  T    
Sbjct: 123 QPQFIIGTPTRINDLAMSGHLHVHLASYLIIDEADLMIDLGLIDQVDQIAARLNDTSNIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+   L      +L  P+ I V+  S   + IE   + T      +  L       
Sbjct: 183 VFSATIPKSLHPFLNKYLNQPEFIVVDNQSQNKKNIEFYLIPTKGTAKVEKTLQL---ID 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFCN ++N   L  SL   G  V  IHG +  R R + +   +    Q ++A
Sbjct: 240 MLNPYLCIIFCNSRENANELADSLNASGIKVGMIHGGLTPRERKQQMKRIRNLDFQFVIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + +D  +I  IE
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYRGVAITLYSPDDEHNISLIE 359

Query: 362 K--LIEKKVDWLNGDLSSLN-----PPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                 + VD  N +L  +         E+ D    N  ++      K+      KK + 
Sbjct: 360 DKGYQFETVDIKNNELQPVKSFNTRKKRERKDDHLTNEVKQKVRSKSKNKVKPGYKKKFK 419

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLG 444
            Q   +  +E ++ SK +Q+ Q      LG
Sbjct: 420 QQVEQMKRQERKQYSK-RQNRQNRKTKRLG 448


>gi|157817897|ref|NP_001100529.1| ATP-dependent RNA helicase DDX42 [Rattus norvegicus]
 gi|149054552|gb|EDM06369.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 (predicted) [Rattus
           norvegicus]
          Length = 929

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 133/379 (35%), Positives = 220/379 (58%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 314 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 373

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 374 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 433

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 434 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 493

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++ +FK+  I ++
Sbjct: 494 EFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVILDFKKKDIPVL 552

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 613 LVRNLEGANQHVSKELLDL 631


>gi|242778101|ref|XP_002479171.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218722790|gb|EED22208.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 833

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 157/477 (32%), Positives = 236/477 (49%), Gaps = 19/477 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  LS  ++  +   G+ KPTPIQ K IP+ L   DV G A TG+GKT +F++P+L 
Sbjct: 312 SFQNYNLSRPILRGLAAVGFTKPTPIQRKAIPVALLGKDVVGGAVTGSGKTGAFIIPILE 371

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q  +   K     ++T   LIGG     Q   L++
Sbjct: 372 RLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLIGGFSLREQENVLKK 431

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 432 RPDIIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 491

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTD + K+    L  P R+ V+    TA T+   FV        K       L 
Sbjct: 492 MLFSATMTDSVDKLIRVGLNRPVRLMVDAKKQTAGTLVQEFVRLRPGREDKRLASLIHLC 551

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      IIF  QKK    +       G     +HG++ Q  R+K + +F++G +  ++
Sbjct: 552 QQVYAARVIIFFRQKKEAHRVRVIFGLFGLKAAELHGSMSQEQRIKSVEDFRDGKVAFLL 611

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA- 359
           A+D+A+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A TL A  D K + A 
Sbjct: 612 ATDVASRGLDIKGVETVINYEAPQTHEIYLHRVGRTARAGRSGRACTLAADPDRKVVRAA 671

Query: 360 -----------IEKLIEKKV-DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
                      + ++I  ++ D L  ++  L   ++ I   +           Q S G +
Sbjct: 672 VKAGKTQGAKIVSRVIGSEIQDKLAEEIEGLRDEVDAILREEKEEKELAQVEMQTSKGEN 731

Query: 408 RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
             K  + ++    P +   +  K +Q+ Q+     L     + A +  K + KL+ K
Sbjct: 732 LLK--HQTEIMSRPKRTWFETEKEKQEAQKRGLIEL---NGLDASLSKKEKRKLSGK 783


>gi|198470572|ref|XP_001355346.2| GA10556 [Drosophila pseudoobscura pseudoobscura]
 gi|198145515|gb|EAL32403.2| GA10556 [Drosophila pseudoobscura pseudoobscura]
          Length = 939

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 123/375 (32%), Positives = 198/375 (52%), Gaps = 10/375 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L   V+  +   G+ KPT IQ +  P+ L   D+ GIAQTG+GKT +++LP + 
Sbjct: 239 NFEECSLPAHVIDEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIV 298

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNK 117
            +  +    R   P  L+L PTRELA Q+      YG           + GG     Q +
Sbjct: 299 HIGKQPPILRGEGPIALVLAPTRELAQQIQSVVRDYGHLCQPEIRHTCIFGGSSKVPQAR 358

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LERG +V+I TPGR++D        +     LV+DEADRMLDMGF P I+ I   +   
Sbjct: 359 DLERGVEVIIATPGRLIDFLENRNTNLARCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 418

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ +++SAT   E+Q ++ +FL +  +I + + + +A       V    +  K   +++ 
Sbjct: 419 RQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEMEKPQRMVRL 478

Query: 238 ------LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                    S +     IIF   K  V ++   +  +G+   +IHG+  Q  R  +L +F
Sbjct: 479 LKEIAPTNNSANNGNKIIIFVETKIKVEDILQIIRTEGYIATSIHGDKTQNERDSVLKDF 538

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G   +++A+D+A+RGLD+ D+ +V N+D PN +ENY+HRIGRTGR  + G A+T    
Sbjct: 539 RNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTP 598

Query: 352 EDIKHIDAIEKLIEK 366
           ++ K    +  ++E+
Sbjct: 599 DNAKQARELISVLEE 613


>gi|254428150|ref|ZP_05041857.1| DbpA RNA binding domain family [Alcanivorax sp. DG881]
 gi|196194319|gb|EDX89278.1| DbpA RNA binding domain family [Alcanivorax sp. DG881]
          Length = 551

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 142/370 (38%), Positives = 214/370 (57%), Gaps = 6/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   ++ A+   G+ +P+PIQ + IPL+L  HD+ G AQTGTGKTA+F LP+L  
Sbjct: 8   FASLGLPEVLLTAIARQGFEQPSPIQAQAIPLLLDGHDLLGQAQTGTGKTAAFALPLLAR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+        P+ LIL PTRELA QVA   E++ K+      L I  G  +  Q K L  
Sbjct: 68  LDPALRE---PQMLILAPTRELAIQVATACEEFAKDIKGLQVLPIYGGGEYRTQLKGLRG 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  RG + +NN++ LV+DEAD ML MGFI  ++ +    P   Q  
Sbjct: 125 GAQVIVGTPGRVMDHMERGSMKLNNLKALVLDEADEMLRMGFIDDVKWVLERTPDDCQLA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++KV++  L+ PK + ++   +T  T         A  +K  A+ + L   
Sbjct: 185 LFSATMPPVIRKVADQHLKQPKLVRIDNGGATTGTTIRQRYWPVAGLNKLDAVCRILEAE 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      ++F   K+  + L   L ++G    A++G+I Q+ R K +   K+    L++A
Sbjct: 245 EHDA--VLVFVRTKQATLELAEQLNRRGLRAEALNGDIPQQQREKTVQRLKDKRFDLLIA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+P + HV N+D+P   E Y+HRIGRTGRAGR G A   VA+ +   +  IE
Sbjct: 303 TDVVARGLDVPRITHVVNYDMPGDPEAYVHRIGRTGRAGRQGDAILFVARREQHVLRQIE 362

Query: 362 KLIEKKVDWL 371
           ++  + ++ +
Sbjct: 363 RITRQSIEKM 372


>gi|14532476|gb|AAK63966.1| At2g45810/F4I18.21 [Arabidopsis thaliana]
 gi|27363412|gb|AAO11625.1| At2g45810/F4I18.21 [Arabidopsis thaliana]
          Length = 528

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 184/372 (49%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L   ++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGKT +F +P L 
Sbjct: 155 EFEDYLLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLE 214

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++       + + +IL PTRELA Q +   ++  K   + V +  GG        +L +
Sbjct: 215 KIDP---ENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQ 271

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L + F P I+ +   +P +RQ L
Sbjct: 272 PVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQIL 331

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++     F     +           T+            ++       L S
Sbjct: 332 MFSATFPVTVKS----FKDRYLKKPYIINLMDQLTLMGVTQYYAFVEERQKVHCLNTLFS 387

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 388 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVC 447

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E+Y+HR+GR+GR G  G A  LV  ED   +   E
Sbjct: 448 TDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTE 507

Query: 362 KLIEKKVDWLNG 373
           + +  ++  +  
Sbjct: 508 QELGTEIKPIPS 519


>gi|291389065|ref|XP_002711079.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Oryctolagus
           cuniculus]
          Length = 820

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 141/434 (32%), Positives = 209/434 (48%), Gaps = 35/434 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q
Sbjct: 452 WITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 511

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 512 GFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMP 571

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            + Q          E    +    ++  R  V   ++                       
Sbjct: 572 VSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 631

Query: 215 --ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             +  E      +     +       +  Q      IIF NQKK    L  SLEK G++ 
Sbjct: 632 AGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNA 691

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHR
Sbjct: 692 CTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHR 751

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     AQH  
Sbjct: 752 IGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHKP 805

Query: 393 ARKNNPIPQKSTGF 406
                   ++ T F
Sbjct: 806 GTILTKKRREETIF 819


>gi|262372452|ref|ZP_06065731.1| superfamily II DNA and RNA helicase [Acinetobacter junii SH205]
 gi|262312477|gb|EEY93562.1| superfamily II DNA and RNA helicase [Acinetobacter junii SH205]
          Length = 383

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 201/377 (53%), Gaps = 6/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++  A+   G+ + TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 5   FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 63  LEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN-K 117
           L     + +     PR LIL PTRELA Q+  + +   K  +L +  L+GG+ FE Q   
Sbjct: 65  LLTNPVQEQRFRGEPRALILAPTRELALQIESDAQHLTKFTDLHLVTLLGGVDFEKQKKM 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    PF 
Sbjct: 125 LDRNFVDIIVATPGRLIDFVEQKEVWLDKIEFLVIDEADRLLDMGFIPSVKRIVRFSPFK 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q      + T     V     Q              +T        Y   +K    L Q
Sbjct: 185 EQRQTLMFSAT-FSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVENKDKYKLLQ 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  ++ +   +IF N++  V  L   L++ G+ V  + G I Q  R+K+L  FK+G   
Sbjct: 244 EILREEPIDKVMIFANRRDQVRRLYDHLKRDGYKVGMLSGEIAQDKRLKMLDQFKQGKNN 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +M+A+D+A RG+ +  V HV NF +P ++++Y+HRIGRTGRAG  G + + ++++D  ++
Sbjct: 304 IMIATDVAGRGIHVDGVSHVINFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDAFYL 363

Query: 358 DAIEKLIEKKVDWLNGD 374
             IEK I KK+     +
Sbjct: 364 PEIEKAIGKKLPLTRIE 380


>gi|160914649|ref|ZP_02076863.1| hypothetical protein EUBDOL_00656 [Eubacterium dolichum DSM 3991]
 gi|158433189|gb|EDP11478.1| hypothetical protein EUBDOL_00656 [Eubacterium dolichum DSM 3991]
          Length = 472

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 132/365 (36%), Positives = 200/365 (54%), Gaps = 6/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F D GL   ++ A+   GY KP  +Q   IP +L + DV   A+TG+GKTASF +P+L
Sbjct: 1   MEFKDFGLEQGIMEALDILGYHKPFAVQEAVIPHLLAKQDVIVQAKTGSGKTASFAIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L       ++P++LIL PTRELA Q+   F++ G    +    + G  PF  Q + L+
Sbjct: 61  QQLIWNE---KLPQSLILAPTRELAMQIQTEFDQIGAKKRIKSLAIYGKFPFRFQKQDLQ 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V+  TPGRILDH        ++I  +VIDEAD MLDMGF+  ++ +   +P  R T
Sbjct: 118 QRTHVICATPGRILDHLREHTFDASSIRYVVIDEADIMLDMGFLDEVEAVLDYLPKKRTT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+ +++  FL +P  I +       + IEH       Q  +   L      
Sbjct: 178 ALFSATMPKEIIQLANRFLHDPLSIAMEAKQDVHQNIEHYVYKLNQQDKETALLHLL--- 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++T+++ I+F   ++ V N+   L+     V  +HG + Q  R+  L  F+ G  +++V
Sbjct: 235 GKETVESAILFVRTQERVENIYQVLKAHHIRVTKLHGGLLQEERLANLKAFRSGEKRILV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARG+DI D+ HV N D P++ E YIHR+GRT R    GKA + V   D + +  +
Sbjct: 295 ASDVAARGIDIADISHVINVDFPDKKETYIHRLGRTARKDTSGKAISFVTARDQEKLMQL 354

Query: 361 EKLIE 365
           E  + 
Sbjct: 355 EDYLG 359


>gi|109096395|ref|XP_001104093.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like isoform 2
           [Macaca mulatta]
          Length = 800

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 141/434 (32%), Positives = 209/434 (48%), Gaps = 35/434 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 372 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 431

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q
Sbjct: 432 WITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 491

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 492 GFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMP 551

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            + Q          E    +    ++  R  V   ++                       
Sbjct: 552 VSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 611

Query: 215 --ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             +  E      +     +       +  Q      IIF NQKK    L  SLEK G++ 
Sbjct: 612 AGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNA 671

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHR
Sbjct: 672 CTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHR 731

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     AQH  
Sbjct: 732 IGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHKP 785

Query: 393 ARKNNPIPQKSTGF 406
                   ++ T F
Sbjct: 786 GTILTKKRREETIF 799


>gi|87310556|ref|ZP_01092685.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
 gi|87286777|gb|EAQ78682.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
          Length = 447

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 145/365 (39%), Positives = 213/365 (58%), Gaps = 5/365 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           + LS  +  A+    Y  PTPIQ + IP +L+  D+ G AQTGTGKTA+F LP+L  L+ 
Sbjct: 1   MQLSEAIQEALATEKYHTPTPIQGQAIPHLLEGSDLIGCAQTGTGKTAAFALPILNQLDL 60

Query: 66  GRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            R+R     P+ L+L PTRELA Q+A +F  YG+N    +  + GG+    Q + L+RG 
Sbjct: 61  DRSRADACAPQVLVLSPTRELAVQIAQSFNVYGRNVKFRLTTIFGGVGQNPQVRALKRGV 120

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            V I TPGR+LD  ++G + ++  +  V+DEADRMLDMGF+P ++ I S +P  RQT+ F
Sbjct: 121 HVAIATPGRLLDLMDQGYVDLSQAKTFVLDEADRMLDMGFMPALKTIVSKLPKQRQTIFF 180

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           +ATM  ++ +++   L NP RIEV   S+TAE +E   +       +      +     +
Sbjct: 181 TATMPPKVAQLASGLLNNPVRIEVAPESTTAERVEQRLMYVSQGDKRAL---LEHSLQAE 237

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
            +   ++F   K     L   L   G    AIHGN  Q  R + L +F+ G +Q++VA+D
Sbjct: 238 GVGRTLVFTKTKHGADRLAKELNASGIRTDAIHGNKTQNKRNRALESFRSGRLQVLVATD 297

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARG+D+  V HV NFD+P   E+Y+HRIGRTGRAG+ G A +     +   + AIE+L
Sbjct: 298 VAARGIDVDGVTHVVNFDLPIDPESYVHRIGRTGRAGKEGIALSFCDFSEHGTLRAIERL 357

Query: 364 IEKKV 368
           I   +
Sbjct: 358 IRTTI 362


>gi|225850461|ref|YP_002730695.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
 gi|225644960|gb|ACO03146.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
          Length = 403

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 134/387 (34%), Positives = 211/387 (54%), Gaps = 10/387 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  +S + + ++   G+ KPT +Q KTIPL+L+  D+   AQTGTGKTA+F +P++
Sbjct: 11  LSFNDFQISKETLNSIRKMGFKKPTEVQEKTIPLILEGKDIIAQAQTGTGKTAAFGIPIV 70

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-L 119
             +     +++    L+L PTRELA QV    +  G+   +    + GG     Q     
Sbjct: 71  ETVNTKSRKIQ---ALVLVPTRELAIQVTKEIKDIGREKRIFALAVYGGKSIRHQIDFLK 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    V++ TPGRI D   R  L +N+++I V+DEADRMLDMGFI  I+ I    P  +Q
Sbjct: 128 KGKDVVIVGTPGRIKDLIERKVLNLNDVKIFVLDEADRMLDMGFIEDIEFIFEQTPPVKQ 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   + +++E FL +   I    P                   +        +
Sbjct: 188 TLLFSATMPKAIMRLAERFLNDDYEIVKIKPEEVTVDRIKQKAYRVDTGKEFE--TLTKI 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++  K  I+F   K+    L   L ++GF+  AIHG+  Q  R ++L +F+   I ++
Sbjct: 246 LNENEGKKSIVFTETKRGADELSKKLRREGFNADAIHGDYSQAKRERVLRDFRRNRIDIL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V+N+ +P   E+YIHRIGRTGRAG+ G A ++++  + +  + 
Sbjct: 306 VATDVAARGLDIKGVDVVYNYSLPRDVESYIHRIGRTGRAGKDGLAISIISTLEDRLFEI 365

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKID 386
           ++K     +  +N  LS    P+EK++
Sbjct: 366 VKKKTRSDIQLIN--LSD--KPIEKLE 388


>gi|254442945|ref|ZP_05056421.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198257253|gb|EDY81561.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 436

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 136/421 (32%), Positives = 224/421 (53%), Gaps = 16/421 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA L LS  ++ ++   GY + TPIQ   IP+VL+  D+   AQTG+GKTA+F LP++
Sbjct: 1   MSFASLSLSDFLLRSLETLGYEEATPIQAAAIPVVLKGSDLLAAAQTGSGKTAAFSLPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG--IPFEAQNKK 118
             L     +   PR L+L PTRELA QV    E+Y +       +L+    + ++AQ K 
Sbjct: 61  ERLAGMEEQKAKPRFLVLVPTRELAVQVGAAIERYAEGAPRKARVLVAFGGVGYDAQMKA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              G +V++ TPGR++D   R  ++++ +E+LV+DEADR+L +GF   +  I  ++P  R
Sbjct: 121 AYAGVEVVVATPGRLIDLAERRSVVLDEVEMLVLDEADRLLALGFAEELNTILEMLPEGR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT    +  ++   L++P +IE+   S   E+I    +              + 
Sbjct: 181 QNLLFSATFPQNVVSLANALLKDPVKIELEAASRPVESIAQRAIEVDGNSRTGL---LRH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   +  +  ++F   K+   N+   L+K G    A+HGN+ Q  R + L  FK+  +++
Sbjct: 238 LLETEGWERVLVFVGSKRRAENVTVKLQKHGIKAVALHGNMSQDKRARSLERFKQSKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI  +  V N+D+P  A +Y+HRIGRTGRAG  G A   +  +   H  
Sbjct: 298 LMATDVAARGIDIAGLPCVVNYDLPRSAADYVHRIGRTGRAGESGLAVNFITDDKDAHFR 357

Query: 359 AIEK-----LIEKKVD------WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
            IEK     L  ++++      W   D +    P++    ++ +  RK      + +G +
Sbjct: 358 LIEKKNGLRLERERLEGFVPENWNPEDPAKGKAPVKGKRPSKKDKLRKAAAGKARGSGGN 417

Query: 408 R 408
           +
Sbjct: 418 K 418


>gi|50302587|ref|XP_451229.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74690512|sp|Q6CXW0|DBP8_KLULA RecName: Full=ATP-dependent RNA helicase DBP8
 gi|49640360|emb|CAH02817.1| KLLA0A05203p [Kluyveromyces lactis]
          Length = 435

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 131/437 (29%), Positives = 214/437 (48%), Gaps = 26/437 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LG S  +V A+     V+PT IQ   IP +L+  D  G A TG+GKT +F  PMLT
Sbjct: 5   EFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLT 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +    +      +L PTRELA Q+A+ F  +G   N+ VA+++GG     Q  +L++
Sbjct: 65  KWSEDPQGMFGI---VLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQK 121

Query: 122 GADVLICTPGRILDHFNRGKLLMN----NIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
               +I TPGR+  H              ++ LV+DEAD +L   F   +    S++P  
Sbjct: 122 RPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPK 181

Query: 178 RQTLL--FSATMTDELQ-----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +     F+ATMTD+++       +E           +  +               ++ K
Sbjct: 182 NKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVK 241

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L Q L   +    + IIF N+      L  +L+     V ++H  + Q+ R   +  
Sbjct: 242 ESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQR 301

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+    ++++A+D+A+RGLDIP V  V N+D+P   + +IHR GRT RAGRHG++   V 
Sbjct: 302 FRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIHRAGRTARAGRHGESLCFVT 361

Query: 351 KEDIKHIDAIEKLIEKKVDWLN--GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           ++DI+ ++AIE+ I KK++     GD + +   L K+       A++ + +     GF  
Sbjct: 362 EKDIQRVEAIEERINKKMEEFTDVGDTAVIRKSLTKV-----TAAKRESLMAMDKEGFGE 416

Query: 409 R-----KKNYSSQKSHI 420
           R     +KN S +K+H 
Sbjct: 417 RRKLQKRKNESKEKTHR 433


>gi|57640241|ref|YP_182719.1| DEAD/DEAH box RNA helicase [Thermococcus kodakarensis KOD1]
 gi|57158565|dbj|BAD84495.1| DEAD/DEAH box RNA helicase [Thermococcus kodakarensis KOD1]
          Length = 406

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 146/412 (35%), Positives = 224/412 (54%), Gaps = 8/412 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59
           M F +LGLS   V AV   G+  PT IQ + IPL+L    D+ G ++TG+GKTA+F LP+
Sbjct: 1   MSFRELGLSSASVEAVERKGFSIPTDIQREVIPLLLSAESDIVGQSKTGSGKTAAFGLPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  +++    V+    LIL PTRELA QV D          + V  + GG P   Q + L
Sbjct: 61  LDSIDESIREVQA---LILTPTRELAIQVTDELRSLRGKRRIYVYSVYGGQPIGPQIRAL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G  +++ TPGR+LDH NRG L ++ +   V+DEADRMLDMGF   I+ I    P  ++
Sbjct: 118 EGGVHIVVGTPGRVLDHINRGTLNLDGVRFFVLDEADRMLDMGFQEDIEAIFRATPKEKR 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  ++  +++ +++NP+ + V+        +E  ++       ++  LL ++L
Sbjct: 178 VLMFSATMPMDVLLLAKKYMRNPEVVIVSRDELVPGEVEQEYIEAVPH--RRFDLLTKIL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +     GI+FC  K     L   L   GF   A++G++ Q +R K  + FK    +++
Sbjct: 236 SDESNEFYGIVFCQTKAETRELSMRLRAAGFRAEALNGDMSQPAREKTFNRFKARKTKIL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+P++ HV N+ +P   E YIHRIGRTGR G+ GKA T +A  +++    
Sbjct: 296 VATDVAARGLDVPEITHVINYSIPMNPEQYIHRIGRTGRMGKKGKAITFIAPGELRRFRY 355

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           I K  +  V+    +LS   P   +  + Q     +            RR++
Sbjct: 356 ITK--QAGVEVKKSELSEGIPKEYRERLRQEELEGEYRGRWGSMKPRQRRRR 405


>gi|322795370|gb|EFZ18163.1| hypothetical protein SINV_10215 [Solenopsis invicta]
          Length = 410

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 145/424 (34%), Positives = 229/424 (54%), Gaps = 16/424 (3%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           GL   +    +D  + +PT IQ + IPL LQ  DV G+A+TG+GKTA+F LP+L  L + 
Sbjct: 1   GLVDTLCKTCIDLKWKEPTRIQQEAIPLTLQGKDVIGLAETGSGKTAAFALPILQALLEQ 60

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
             R      LIL PTRELA Q+++ F+  G +  +   +L+GG+   AQ   LE+   ++
Sbjct: 61  PQRYFA---LILTPTRELAFQISEQFDALGSSMGVKTVVLVGGMDMHAQGMILEKKPHII 117

Query: 127 ICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           I TPGR++DH    K      ++ LV+DEADR+L+M F   +  I  ++P  R+TLLFSA
Sbjct: 118 IATPGRLVDHLENTKGFNLRQLKFLVMDEADRILNMDFEVEVDKILRVIPRERRTLLFSA 177

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           TMT ++QK+    L+NP R+EV+T   T E ++  ++       K   +    + ++   
Sbjct: 178 TMTKKVQKLQRASLRNPVRVEVSTKYQTVEKLQQYYIFIPV---KFKDVYLVHILNELAG 234

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
            + +IFC    N V     L   GF+   +HG + Q  R+  L+ FK     +++++D+A
Sbjct: 235 NSFMIFCGTCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILISTDVA 294

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLDIP V  V NFD+P  +++YIHR+GRT RAGR G++ T V + D++    IE+LI 
Sbjct: 295 SRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLIS 354

Query: 366 KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKES 425
           K++     +   +    E+            N    K +G  +R  N     +   +   
Sbjct: 355 KQLPLYPTEEEEVMLLQER---------DMKNIEENKKSGKRKRGGNNEDDDTEQSIGVR 405

Query: 426 EKIS 429
           ++I 
Sbjct: 406 KRIK 409


>gi|237735417|ref|ZP_04565898.1| ATP-dependent RNA helicase RhlE [Mollicutes bacterium D7]
 gi|229381162|gb|EEO31253.1| ATP-dependent RNA helicase RhlE [Coprobacillus sp. D7]
          Length = 418

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 153/425 (36%), Positives = 235/425 (55%), Gaps = 10/425 (2%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTL-- 76
             Y  P+PIQ + IP ++   D+ G A+TGTGKTA+F LP+L  L       + PRT+  
Sbjct: 1   MKYDIPSPIQEQAIPAIISGRDIFGCAKTGTGKTAAFALPILQKLYLRDESEKYPRTIKA 60

Query: 77  -ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
            IL PTRELA Q+ + FE      NL  A++ GG+   +Q  K+ RG DVLI TPGR++D
Sbjct: 61  LILAPTRELAIQINETFEAMNPQVNLKSAVIFGGVRQGSQVTKINRGIDVLIATPGRLID 120

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
            +N+G + + ++E LV+DEADRMLDMGFI  I+ I   +P   QT+LFSAT+ DE++ + 
Sbjct: 121 LYNQGLVDLKHVEYLVLDEADRMLDMGFIKDIRKILRFIPRRHQTMLFSATLPDEIKHLV 180

Query: 196 ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
            + L +P +I +++ + T E I             K  +          + N I+F   K
Sbjct: 181 SDLLNDPLKIMISSGNVTVEKINQSLYFVDKVNKAKLLIKLL---ENPQIYNAIVFVRTK 237

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           +NV  LC  L K   +   IHG+  Q +R++ L+NFK   ++++VASD+AARG+DI ++ 
Sbjct: 238 RNVDTLCKKLIKAQITCEGIHGDKSQNARVRALNNFKNDKVRVLVASDIAARGIDIDELT 297

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDL 375
           HV NFD+P++AENY+HRIGRT RAG  G+A T  + ++   +  I+K I + +  ++   
Sbjct: 298 HVINFDLPDQAENYVHRIGRTARAGASGEAITFCSFQEKALLKDIQKFINQDIPVVDNPY 357

Query: 376 SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDI 435
                P++ + I +  H  K     QKS    +  K    + S       +     + + 
Sbjct: 358 Y----PMKDLSIPEKKHKSKKKGETQKSRDKAKHLKQGQKKLSVRTNNIKKNSKTKRSNF 413

Query: 436 QENDA 440
           +    
Sbjct: 414 KRRRP 418


>gi|78060377|ref|YP_366952.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
 gi|77964927|gb|ABB06308.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
          Length = 481

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 148/370 (40%), Positives = 218/370 (58%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  + D  Y  PTP+Q K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIDPLLRNLQDLNYQAPTPVQAKAIPAVLGGKDVMAGAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +    V   R    +L PTRELA QV  +F  YGK  +L      GG+    Q  K
Sbjct: 61  QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIAYGKGLDLRFLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D+++ ++   L+ P  I V+ P++TA  I+   V    +      +    
Sbjct: 181 QTLLFSATFSDDIRAMAATILRGPVNISVSPPNATASKIKQWVVTVDKRNKPDLFMHL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +++  ++ ++F   +  V  L   L++ G++V  IHG+  Q +R++ L  FK G +Q+
Sbjct: 239 -VAENKWEHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEKKV 368
           AIE LI++ +
Sbjct: 358 AIEALIKQTL 367


>gi|88859266|ref|ZP_01133906.1| ATP-dependent RNA helicase, DEAD box family protein
           [Pseudoalteromonas tunicata D2]
 gi|88818283|gb|EAR28098.1| ATP-dependent RNA helicase, DEAD box family protein
           [Pseudoalteromonas tunicata D2]
          Length = 449

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 124/438 (28%), Positives = 213/438 (48%), Gaps = 9/438 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F + G+  +++  +   G   PT +Q + IP+ L   D+   ++TG+GKT +F++P +  
Sbjct: 12  FEEFGIDKRLLTQLAHQGITSPTDVQQQAIPVALSGQDLFVQSKTGSGKTLAFLVPALQR 71

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I+++     R PR +I+ PTRELA QV           N+    ++GG  F  Q K L++
Sbjct: 72  IIKQKPLSKRDPRAVIITPTRELANQVFAQLRLLVAGSNIVATKILGGDNFNDQIKALKK 131

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+ DH  +    +  +E+L+IDEADR++D+GF   I  I +      +  
Sbjct: 132 DPHVIVATPGRLADHIKQKSCFLAGLELLIIDEADRIMDLGFKAEIDLINTEANHRLRQT 191

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L  +   +  Q  + +        +V    S  E  +      +A        L     S
Sbjct: 192 LLFSATLEHSQIDALSRNLLKSPKKVTLSQSNEEHTDITQNMFFADNLLHKEALLAHFLS 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   I+F   +++   L   +  +G S  A+ G++ Q  R+ I+ +F  G  Q+++ 
Sbjct: 252 KPNIGQCIVFTATREDTYRLSELISGKGLSSQALAGDMPQSKRLSIMDSFSRGQSQVLIT 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLD+ +V HV NFD+P +AE Y+HRIGRTGRAG  G A + V  +D     AI+
Sbjct: 312 TDIASRGLDLLNVTHVINFDLPKQAEEYVHRIGRTGRAGFKGHAISFVGPKDWDSFVAIK 371

Query: 362 KLIEKKVDWLNGD-----LSSLN-PPLEKIDIAQHNHARKNNPIPQKSTGFDRRK--KNY 413
             ++ ++ +L  D        +  P L +  IA    A K +  P+++     +K     
Sbjct: 372 AFLQHEITFLTVDGLAAKFKGIKTPKLGEKQIANKVAAPKKSIAPKRTIKPAVKKAIAQP 431

Query: 414 SSQKSHIPLKESEKISKL 431
                H PL+   K   +
Sbjct: 432 FDIDGHAPLRRKPKSENI 449


>gi|168185001|ref|ZP_02619665.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|237795441|ref|YP_002862993.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           botulinum Ba4 str. 657]
 gi|182671947|gb|EDT83908.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|229262402|gb|ACQ53435.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Ba4 str. 657]
          Length = 376

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 142/370 (38%), Positives = 213/370 (57%), Gaps = 6/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS  ++  +     ++PTPIQ ++I L+   +DV   AQTGTGKT +F+LPM 
Sbjct: 2   IKFEELGLSDSIIDVLKKQRIIEPTPIQEESIMLIKSGNDVIAEAQTGTGKTLAFLLPMF 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      +   + LI+ PTRELA Q+ +   K  +  +L +    GG    +Q KKL+
Sbjct: 62  ENISP---DIDAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH NR  L   +++ LV+DEAD ML MGF   +++I    P  RQT
Sbjct: 119 NNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++   +++PK I +     T + I            ++       + 
Sbjct: 179 LCFSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNI---KQVLIETTDRRKQEDLCKIL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     IIFC  K+ V  L  +L K+G++   +HG+I Q  R +I+ +FK   IQ ++
Sbjct: 236 DEENPFMAIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLI 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HVFN+D+P  AE+YIHRIGRTGRAG  G  F  VA +D + +  I
Sbjct: 296 ATDVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLGMI 355

Query: 361 EKLIEKKVDW 370
           E+ I+ K+  
Sbjct: 356 EREIKFKIPR 365


>gi|153938593|ref|YP_001391335.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum F str.
           Langeland]
 gi|152934489|gb|ABS39987.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. Langeland]
 gi|295319364|gb|ADF99741.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. 230613]
          Length = 376

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 142/370 (38%), Positives = 213/370 (57%), Gaps = 6/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS  ++  +     ++PTPIQ ++I L+   +DV   AQTGTGKT +F+LPM 
Sbjct: 2   IKFEELGLSDSIIDVLKKQRIIEPTPIQEESIMLIKNGNDVIAEAQTGTGKTLAFLLPMF 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      +   + LI+ PTRELA Q+ +   K  +  +L +    GG    +Q KKL+
Sbjct: 62  ENISP---DINAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH NR  L   +++ LV+DEAD ML MGF   +++I    P  RQT
Sbjct: 119 NNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++   +++PK I +     T + I            ++       + 
Sbjct: 179 LCFSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNI---KQVLIETTDRRKQEDLCKIL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     IIFC  K+ V  L  +L K+G++   +HG+I Q  R +I+ +FK   IQ ++
Sbjct: 236 DEENPFMAIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLI 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HVFN+D+P  AE+YIHRIGRTGRAG  G  F  VA +D + +  I
Sbjct: 296 ATDVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLGMI 355

Query: 361 EKLIEKKVDW 370
           E+ I+ K+  
Sbjct: 356 EREIKFKIPR 365


>gi|321399813|emb|CAJ08508.2| putative ATP-dependent RNA helicase [Leishmania major strain
           Friedlin]
          Length = 615

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 121/393 (30%), Positives = 195/393 (49%), Gaps = 16/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA + L+P +   V    Y KPTP+Q   IP VL   D+   AQTG+GKTA++++P + 
Sbjct: 136 SFATMALAPALAENVNRCRYQKPTPVQKYGIPCVLNGSDLMACAQTGSGKTAAYLIPAIN 195

Query: 62  ILEKGRARVRMPRTL-------ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +         P          +L PTREL+ Q+ +   K+         ++ GG     
Sbjct: 196 FMLVNNLNRAKPTNSQAAPSALVLSPTRELSIQIYEEGRKFTYRTGFRCVVVYGGADPRH 255

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  +L RG  +L+ TPGR+ D F RG    +++  LV+DEADRMLDMGF P I+ I    
Sbjct: 256 QIHELTRGCGLLVATPGRLSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRAIVQGP 315

Query: 175 PFTRQTLL------FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
                         +SAT   E+Q+++  FL +   ++V    ST E I           
Sbjct: 316 DSDMPPPGERQTLLYSATFPKEIQQMAREFLYHHHFLQVGRVGSTTENITQDVRWVEDMD 375

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            +        +  +   +  ++F  +K++   L   L +      +IHG+  QR R + L
Sbjct: 376 KRG---CLLEVLKEHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEAL 432

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             FK G  +++VA+D+A+RGLDIP+V  V  +D+P+  ++Y+HRIGRTGRAG+ G A + 
Sbjct: 433 DIFKSGVCRVLVATDVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGRTGRAGKRGTAISF 492

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
              ++   +D +  L+ +    +  ++ +L   
Sbjct: 493 FNDKNRNIVDDLIPLLRETNQTVLPEVQALAKK 525


>gi|157374733|ref|YP_001473333.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157317107|gb|ABV36205.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 465

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 123/385 (31%), Positives = 193/385 (50%), Gaps = 6/385 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F D  L  +++  +   G  KPT IQ + IP+ L   D+   ++TG+GKT +F+LP M
Sbjct: 20  LQFTDFSLDTRLLKTLDHMGIEKPTEIQQQAIPVGLSGKDLMASSKTGSGKTLAFLLPAM 79

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I+       R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 80  QRIISTRALSKRDPRVLILLPTRELANQVYSQLRLLVANTQYKAVKILGGENFNDQAKSL 139

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ER    ++ TPGR+ DH  +  L +N +E+L++DEADRMLD+GF+  ++ I +     R+
Sbjct: 140 ERDPHFVVATPGRLADHLAQHHLHLNGLELLILDEADRMLDLGFVDQLKAINAAADHKRR 199

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +            + V+  +   E ++       + +      L   +
Sbjct: 200 QTLMFSATLDHNKINEIAAELLKDPMHVSIGAGNIENLDITQRIYLSDHLDHKEALLNHI 259

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  K  IIF   +++   L   L + GF+  ++ G++ Q +R +I+  F  G   ++
Sbjct: 260 LKNEKNKQVIIFTATRQDTDRLATKLAEAGFNTASLSGDLKQNARNQIMDQFSRGLQDIL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +   
Sbjct: 320 VTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWVNFKQ 379

Query: 360 IEKLIEK-----KVDWLNGDLSSLN 379
           ++  + K      +D L    S L 
Sbjct: 380 VQVFLRKTFEISTIDGLEAKFSGLK 404


>gi|148702332|gb|EDL34279.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_a [Mus
           musculus]
          Length = 927

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 220/379 (58%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 252 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 311

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 312 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 371

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 372 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 431

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 432 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 491

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L  +L+++G ++  +HG++DQ  R K++S+FK+  I ++
Sbjct: 492 EFTSSG-SVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 550

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 551 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 610

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 611 LVRNLEGANQHVSKELLDL 629


>gi|148702333|gb|EDL34280.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_b [Mus
           musculus]
          Length = 1012

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 220/379 (58%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 337 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 396

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 397 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 456

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 457 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 516

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 517 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 576

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L  +L+++G ++  +HG++DQ  R K++S+FK+  I ++
Sbjct: 577 EFTSSG-SVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 635

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 636 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 695

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 696 LVRNLEGANQHVSKELLDL 714


>gi|133777033|gb|AAH43036.4| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Mus musculus]
          Length = 810

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 220/379 (58%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 135 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 194

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 195 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 254

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 255 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 314

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 315 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 374

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L  +L+++G ++  +HG++DQ  R K++S+FK+  I ++
Sbjct: 375 EFTSSG-SVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 433

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 434 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 493

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 494 LVRNLEGANQHVSKELLDL 512


>gi|157838001|ref|NP_082350.3| ATP-dependent RNA helicase DDX42 [Mus musculus]
 gi|123796460|sp|Q810A7|DDX42_MOUSE RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|74146847|dbj|BAE41388.1| unnamed protein product [Mus musculus]
 gi|123242261|emb|CAM23778.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Mus musculus]
          Length = 929

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 220/379 (58%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 314 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 373

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 374 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 433

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 434 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 493

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L  +L+++G ++  +HG++DQ  R K++S+FK+  I ++
Sbjct: 494 EFTSSG-SVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 552

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 613 LVRNLEGANQHVSKELLDL 631


>gi|75076134|sp|Q4R5S7|DDX4_MACFA RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog
 gi|67970411|dbj|BAE01548.1| unnamed protein product [Macaca fascicularis]
          Length = 725

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 131/424 (30%), Positives = 211/424 (49%), Gaps = 18/424 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 289 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 348

Query: 61  TILEK------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             +            ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 349 AHMMHDGITASCFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGH 408

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 409 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 468

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       V    Q+SK
Sbjct: 469 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSK 528

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 529 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 586

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 587 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 646

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L      +   LE+I  + +      +         D RK
Sbjct: 647 LESDNH------LAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTRK 700

Query: 411 KNYS 414
              S
Sbjct: 701 GKSS 704


>gi|26340024|dbj|BAC33675.1| unnamed protein product [Mus musculus]
          Length = 810

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 220/379 (58%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 135 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 194

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 195 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 254

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 255 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 314

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 315 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 374

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L  +L+++G ++  +HG++DQ  R K++S+FK+  I ++
Sbjct: 375 EFTSSG-SVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 433

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 434 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 493

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 494 LVRNLEGANQHVSKELLDL 512


>gi|328876634|gb|EGG24997.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 806

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 211/380 (55%), Gaps = 5/380 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+       ++  +   G+  PT IQ ++ P+ L+  D+ G+A+TG+GKT +F+LP +  
Sbjct: 406 FSHF--PSYIMSEIAVLGFTAPTSIQCQSWPIALKGRDMIGLAETGSGKTLAFLLPAIVH 463

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +           P  L+L PTRELA Q+ +  +K+G +  +    + GG+P   Q + L 
Sbjct: 464 INAQPYLETGDGPIVLVLTPTRELAMQIQNECDKFGSSSKIKNCCIYGGVPKYQQAQALR 523

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G ++++ TPGR++D   RG   +  +  LV+DEADRMLDMGF   I+ I   +   +QT
Sbjct: 524 SGVEIVVATPGRLIDFLERGGTNLRRVTYLVLDEADRMLDMGFEDQIRKILGQIRPDKQT 583

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT    +Q ++ +FL +P ++++ +   +A       +    +  K+  L  Q L+
Sbjct: 584 LMFSATWPKSVQSLAADFLVDPIQVKIGSAELSANHKVTQHIEICEKMDKQTKLF-QYLK 642

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S +     IIF   K  V  L  ++   GF   AIHG+  Q  R   LS FK+G IQ ++
Sbjct: 643 SIEPGAKCIIFLETKSGVGMLARNMSYAGFKCEAIHGDKTQGERDFALSQFKDGKIQCLI 702

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLD+ D+ +V N+D PN  E+YIHRIGRTGRAG  G A+TL   +D++    +
Sbjct: 703 ATDVASRGLDVKDIKYVINYDFPNTIESYIHRIGRTGRAGATGTAYTLFTLDDMRLASDL 762

Query: 361 EKLIEKKVDWLNGDLSSLNP 380
             ++ +   ++   L  + P
Sbjct: 763 VTVLAEASQYVPPQLEQMVP 782


>gi|193785886|dbj|BAG54673.1| unnamed protein product [Homo sapiens]
          Length = 800

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 141/434 (32%), Positives = 209/434 (48%), Gaps = 35/434 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 372 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 431

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q
Sbjct: 432 WITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 491

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 492 GFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMP 551

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            + Q          E    +    ++  R  V   ++                       
Sbjct: 552 VSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 611

Query: 215 --ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             +  E      +     +       +  Q      IIF NQKK    L  SLEK G++ 
Sbjct: 612 AGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNA 671

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHR
Sbjct: 672 CTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHR 731

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     AQH  
Sbjct: 732 IGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHKP 785

Query: 393 ARKNNPIPQKSTGF 406
                   ++ T F
Sbjct: 786 GTILTKKRREETIF 799


>gi|148828072|ref|YP_001292825.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae PittGG]
 gi|189040031|sp|A5UI36|RHLB_HAEIG RecName: Full=ATP-dependent RNA helicase rhlB
 gi|148719314|gb|ABR00442.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG]
          Length = 415

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 125/379 (32%), Positives = 194/379 (51%), Gaps = 4/379 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 71  LLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQVI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P  + 
Sbjct: 131 ECGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L    + T   +     F       E        +T        +   ++    L   L
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMND-PEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTL 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G + ++
Sbjct: 250 MEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDIL 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ A
Sbjct: 310 VATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPA 369

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+ I   +     +  +L
Sbjct: 370 IEEYIGHSIPVSQYETEAL 388


>gi|114644990|ref|XP_001159984.1| PREDICTED: probable ATP-dependent RNA helicase DDX23 isoform 1 [Pan
           troglodytes]
          Length = 800

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 141/434 (32%), Positives = 209/434 (48%), Gaps = 35/434 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 372 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 431

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q
Sbjct: 432 WITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 491

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 492 GFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMP 551

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            + Q          E    +    ++  R  V   ++                       
Sbjct: 552 VSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 611

Query: 215 --ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             +  E      +     +       +  Q      IIF NQKK    L  SLEK G++ 
Sbjct: 612 AGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNA 671

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHR
Sbjct: 672 CTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHR 731

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     AQH  
Sbjct: 732 IGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHKP 785

Query: 393 ARKNNPIPQKSTGF 406
                   ++ T F
Sbjct: 786 GTILTKKRREETIF 799


>gi|120599647|ref|YP_964221.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120559740|gb|ABM25667.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 481

 Score =  153 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 154/477 (32%), Positives = 238/477 (49%), Gaps = 21/477 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           M F  LGLS  ++ A+ + GY + T +Q K IPL  +  D+   AQTGTGKTA+F LP  
Sbjct: 1   MKFETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTAAFALPVL 60

Query: 59  ---MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                 IL        + R L++ PTRELA QV DN +KY +   L    + GG     Q
Sbjct: 61  EKLAAEILVSDGNDKPILRALVMTPTRELAIQVCDNIQKYSQFLPLKTIAVYGGANMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K +E+G D+L+ TPGR+ D   + +L ++++  LVIDEADRMLDMGF+  I+ +  L+ 
Sbjct: 121 RKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKRLIA 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              QT+LFSAT +D +++      Q           +   T        Y    ++ A L
Sbjct: 181 PVHQTMLFSATYSDAVKQ----LAQKMLNEPQWVNVADTTTASTVVQEVYRVDKRRKAEL 236

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L  ++  +  ++F + K++  +L   L+  G +    HG+  Q +R ++L +FK G 
Sbjct: 237 LSELVGRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEDFKLGK 296

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGLDI  +  V N ++P  AE+YIHRIGRTGRAG  G+A + V+  D +
Sbjct: 297 LRVLVATDVAARGLDIQALPLVINLELPFFAEDYIHRIGRTGRAGLAGRAISFVSPSDDE 356

Query: 356 HIDAIEKLIEKKVDWL--NGDLSSLNPPLEKIDI-------AQHNHARKNNPIPQKSTGF 406
            +  IE LIE+K+      G       P    DI       A+ ++    +    KS+  
Sbjct: 357 MLTEIEALIEQKLPVSVQPGYEEGTPLPARYRDIPASPTKPAKWSYKAPKDRAIGKSSES 416

Query: 407 DRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
             R +    + +   ++ES          + + A+  G  G       PK       
Sbjct: 417 QARSRQNIGRDA---MRESPTREGKYAKDKAHGAEGKGSAGKPFNTTKPKPHSGSRS 470


>gi|332024917|gb|EGI65105.1| ATP-dependent RNA helicase abstrakt [Acromyrmex echinatior]
          Length = 625

 Score =  153 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 128/395 (32%), Positives = 196/395 (49%), Gaps = 16/395 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G +KPTPIQ++ IP VL   D+ GIA TG+GKT  FVLP++ 
Sbjct: 185 TFKEMKFHKGILYGLEQKGIIKPTPIQVQGIPTVLSGRDMIGIASTGSGKTLVFVLPIIE 244

Query: 62  IL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI------ 110
                  +    +   P  LI+ P+RELA Q  D    Y  +   T    I         
Sbjct: 245 FCLEQEIDMPFIKKEGPYGLIICPSRELAKQTYDIIRHYTNSLRQTDCPEIRCCLAIGGV 304

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
           P       + +G  +++ TPGR++D  ++  + ++    L +DEADRM+DMGF   ++ I
Sbjct: 305 PVSESLAIINKGVHIMVATPGRLMDMLHKKMVTLSVCRYLCMDEADRMIDMGFEEDVRTI 364

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM   +Q     F ++     V      A       +       +
Sbjct: 365 FSFFKGQRQTLLFSATMPKRIQN----FARSALVKPVTINVGRAGAASMNVIQEVEYVKQ 420

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K++V  +   L  +G    AIHG IDQ  R + +  
Sbjct: 421 EAKIVYLLECLQKTAPPVLIFAEKKRDVDAIHEYLLIKGVEAVAIHGGIDQEERSRSVEA 480

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+D+A++GLD  DV HV N+D+P+  ENY+HRIGRTGR+GR G A T + 
Sbjct: 481 FRAGRKDVLVATDVASKGLDFADVQHVINYDMPDDVENYVHRIGRTGRSGRTGIATTFIN 540

Query: 351 K-EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
           K  D   +  ++ L+ +    +   L  L    EK
Sbjct: 541 KANDESVLLDLKHLLMEAKQKVPPFLLELCSENEK 575


>gi|67468731|ref|XP_650379.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56466997|gb|EAL44993.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 542

 Score =  153 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 126/389 (32%), Positives = 208/389 (53%), Gaps = 5/389 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +++  L LS ++  A+ +AGY K T IQ ++IPL+L   D+   A+TG+GKT +F++P++
Sbjct: 81  IEYKSLNLSEEIQKALEEAGYTKMTTIQARSIPLLLMGKDIMAKARTGSGKTLAFLIPIV 140

Query: 61  TILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            IL K   + R     +I+ PTRELA Q  D  EK   +   T  L+IGG   + + + L
Sbjct: 141 EILNKIHFQTRNGTGAIIISPTRELAIQTFDVLEKILAHSERTRTLIIGGSSKKKEEEAL 200

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNI-EILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++GA +++ TPGR+LDH    K  +    + LVIDEADR++++GF   ++ I + +P  R
Sbjct: 201 KKGASIVVATPGRLLDHIINTKCFIYRNLKCLVIDEADRIMEVGFEEEMRQILNRLPKNR 260

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT ++++     N       +      ST  T            +K    L   
Sbjct: 261 QTMLFSATQSEKV-DDIANISLKQPVVINVESQSTISTSSKLEQGYVLIEAKDRFRLLYT 319

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +  K V      L      V A+HG +DQ  R K+   F +    +
Sbjct: 320 FLRKNKNKKTIVFMSSCKAVKFYSDLLNYIDIPVKALHGQLDQDKRTKVFFEFCKAKEAI 379

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +D+AARGLDIP V  +   D+P+  ++YIHR+GRT RA   G+A   V   +I+ ++
Sbjct: 380 LITTDIAARGLDIPAVDWIIQVDLPDSPKDYIHRVGRTARADTKGRALLFVQPCEIRILE 439

Query: 359 AI--EKLIEKKVDWLNGDLSSLNPPLEKI 385
            +  EK+   + +     ++++   LEK+
Sbjct: 440 YLKGEKIPLTQYEVPEKKIANIQRELEKL 468


>gi|50551977|ref|XP_503463.1| YALI0E02552p [Yarrowia lipolytica]
 gi|74659870|sp|Q6C799|DBP8_YARLI RecName: Full=ATP-dependent RNA helicase DBP8
 gi|49649332|emb|CAG79042.1| YALI0E02552p [Yarrowia lipolytica]
          Length = 442

 Score =  153 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 132/448 (29%), Positives = 219/448 (48%), Gaps = 18/448 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL   +  ++ +    KP+ IQ   IP +++  D  G A+TG+GKT +F  PML
Sbjct: 1   MSFTDLGLPEWLNESLSNMAITKPSAIQKACIPQIMKGKDCIGGARTGSGKTIAFAAPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               K          L+L PTRELA Q+A+ F   G N N+ VAL+ GG+    Q+ +L+
Sbjct: 61  AEWSK---DPCGIFGLVLTPTRELAIQIAEQFTALGANMNIRVALIYGGVDMVKQSLELQ 117

Query: 121 RGADVLICTPGRILDHFN----RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +    +I TPGR+ DH              +  +V+DEADR+L  GF+P ++    L+P 
Sbjct: 118 KMPHFVIATPGRLADHIRSSGEDTIRGFRRVRYVVMDEADRLLTPGFVPDLKTCMDLLPD 177

Query: 177 TRQTLL--FSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
             +     F+AT+TD ++        + P  I          +           Y ++  
Sbjct: 178 PSKRQTLLFTATVTDAVRALKDRTGEKGPPFIHEIASDIAVPSTLTQSYLFLPGYVREAY 237

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L   L    +  K+ IIF N+ +    L   L        ++H  + Q+ R+  L  F+ 
Sbjct: 238 LWAILTHPDNEKKSAIIFVNRTQTAETLRRMLMALDVKTASLHSEMRQQERVNALGRFRA 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
              +++VA+D+A+RGLDIP V  V NFD+P  A++YIHR+GRT RAGR G++ +LV + D
Sbjct: 298 QAARVLVATDVASRGLDIPTVEMVINFDLPADADDYIHRVGRTARAGRKGQSVSLVTERD 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           +  +  IE+ +  K++    DL   +  +E+        A++   +  ++  F  RK+  
Sbjct: 358 VTRVTNIEERVGTKME--KYDLIEDDKVVEEYLTPAST-AKRQAVLDMEAENFGERKRIQ 414

Query: 414 SSQKS-----HIPLKESEKISKLQQDIQ 436
             +           K+ ++++K + D +
Sbjct: 415 RKKAGLDVDMKSKNKKPKRVAKGKSDKK 442


>gi|154270258|ref|XP_001535985.1| hypothetical protein HCAG_09069 [Ajellomyces capsulatus NAm1]
 gi|150410056|gb|EDN05444.1| hypothetical protein HCAG_09069 [Ajellomyces capsulatus NAm1]
          Length = 457

 Score =  153 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 117/365 (32%), Positives = 180/365 (49%), Gaps = 7/365 (1%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM 72
           +  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L       ++ + 
Sbjct: 1   MMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERTNPKNSKTQA 60

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
              LIL PTRELA Q +   +  GK+  + V +  GG   +    +L     +++ TPGR
Sbjct: 61  ---LILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLNEAVHIIVGTPGR 117

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           ILD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ +LFSAT    ++
Sbjct: 118 ILDLASKGVADLSECSTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQVMLFSATFPMIVK 177

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
                F     R           T+            K+       L S+  +   IIFC
Sbjct: 178 S----FKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFC 233

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
           N    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V SDL  RG+DI 
Sbjct: 234 NSTNRVELLAKKITELGYSCFYSHAKMLQHNRNRVFHDFRNGVCRNLVCSDLLTRGIDIQ 293

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
            V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  IE+ +  ++  + 
Sbjct: 294 AVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRYNLYKIEQELGTEIQPIP 353

Query: 373 GDLSS 377
             +  
Sbjct: 354 QSIDK 358


>gi|126663594|ref|ZP_01734591.1| putative RNA helicase dead-box protein [Flavobacteria bacterium
           BAL38]
 gi|126624542|gb|EAZ95233.1| putative RNA helicase dead-box protein [Flavobacteria bacterium
           BAL38]
          Length = 642

 Score =  153 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 214/373 (57%), Gaps = 9/373 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLP 58
           M+ F  LGL+  ++ A+ D G+  P+ +Q K IP++L Q  D+  +AQTGTGKTA+F  P
Sbjct: 1   MNKFEQLGLNESLLLAIKDLGFENPSEVQEKAIPVLLEQNTDLVALAQTGTGKTAAFGFP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNK 117
           ++  ++      R  + LIL PTREL  Q+ +  + Y K       + + G      Q +
Sbjct: 61  LIQKIDA---ENRNTQALILSPTRELCLQITNEIKLYSKYIKGLHTVAVYGGASITEQAR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +++RGA +++ TPGR+ D  NRG + + NI+  ++DEAD ML+MGF   I +I S  P  
Sbjct: 118 EVKRGAQIIVATPGRMQDMINRGLVNIKNIDFCILDEADEMLNMGFYEDICSILSDTPDE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           + T LFSATM  E+ ++++ F+ +P  I V + +             Y   ++      +
Sbjct: 178 KNTWLFSATMPAEVARIAKQFMSSPVEITVGSKN---SGSATVSHEYYCVNARDRYEALK 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   +     ++FC  K++   +   L + G++  A+HG++ Q  R  ++ +F+   IQ
Sbjct: 235 RLADANPDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQAQRDGVMKSFRGRQIQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ ++ HV N+ +P+  E Y HR GRTGRAG+ G +  ++ K +++ I
Sbjct: 295 MLVATDVAARGIDVDNITHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIITKSELRKI 354

Query: 358 DAIEKLIEKKVDW 370
            +IE++I++K   
Sbjct: 355 SSIERIIQQKFQE 367


>gi|126173575|ref|YP_001049724.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125996780|gb|ABN60855.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 472

 Score =  153 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 151/474 (31%), Positives = 233/474 (49%), Gaps = 17/474 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           M F  LGLS  ++ A+ + GY + T +Q K IPL  +  D+   AQTGTGKTASF LP  
Sbjct: 1   MKFETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTASFALPVL 60

Query: 59  ---MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  L        + R L++ PTRELA QV +N +KY +   L    + GG     Q
Sbjct: 61  EKLAAESLTSDSNDKPILRALVMTPTRELAIQVCENIQKYSQFLPLKTLAVYGGANMNPQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K +E+G D+L+ TPGR+ D   + +L ++++  LVIDEADRMLDMGF+  I+ +  L+ 
Sbjct: 121 RKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKRLIA 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              QT+LFSAT +D +++      +           +   T        Y    ++ A L
Sbjct: 181 PQHQTMLFSATYSDAVKQ----LAEKMLNEPQWVNVADTTTASTVVQEVYRVDKRRKAEL 236

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L  ++  +  ++F + K++  +L   L+  G +    HG+  Q +R ++L  FK   
Sbjct: 237 LSELVGRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEEFKASK 296

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGLDI  +  V N ++P  AE+YIHRIGRTGRAG  G+A + V+  D +
Sbjct: 297 LRVLVATDVAARGLDIQALPMVINLELPFLAEDYIHRIGRTGRAGLTGRAISFVSPSDDE 356

Query: 356 HIDAIEKLIEKKVDWL--NGDLSSLNPPLEKIDIAQ---HNHARKNNPIPQKSTGFDRRK 410
            +  IE LIE+K+      G       P    D          + ++  PQ  T    R+
Sbjct: 357 MLAEIEALIEQKLPVSVQPGYEEGSPLPARYRDAPAAPIKPIGKWSHKAPQDRTIGQSRQ 416

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
             Y+  K+       +K S   +    +      F    P   L  N+     +
Sbjct: 417 GKYAKGKAQDSKAGGDKSSSRAKPASGSSKP---FNATKPKSNLVSNKSGFGSR 467


>gi|125526364|gb|EAY74478.1| hypothetical protein OsI_02369 [Oryza sativa Indica Group]
          Length = 792

 Score =  153 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 136/378 (35%), Positives = 215/378 (56%), Gaps = 2/378 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   G  P+++  +  AG+  PTPIQ ++ P+ LQ  DV  IA+TG+GKT  ++LP   
Sbjct: 151 SFETGGFPPEILKEIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLPGFM 210

Query: 62  ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++ +   R  P  L+L PTRELA Q+ +   K+G++  ++   L GG P   Q + L+
Sbjct: 211 HIKRLQNNPRSGPTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRDLD 270

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR+ D     ++ +  +  LV+DEADRMLDMGF P I+ I   +P  RQT
Sbjct: 271 RGVDVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRRQT 330

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+++AT   E+++++E+ L +P ++ + +                   S+K   L+Q+L+
Sbjct: 331 LMYTATWPKEVRRIAEDLLVHPVQVTIGSVDELVANSAITQNVELITPSEKLRRLEQILR 390

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQD+    +I     K + +       + F   AIHG+  Q  R K+LS+F+ G   ++V
Sbjct: 391 SQDSGSKVLI-FCTTKRMCDQLARTLTRQFGASAIHGDKSQSEREKVLSHFRSGRSPILV 449

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+  V N   P   E+Y+HRIGRTGRAG  G A+T    +D K+   +
Sbjct: 450 ATDVAARGLDIKDIRVVINSPFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQDSKYAADL 509

Query: 361 EKLIEKKVDWLNGDLSSL 378
            K++E     +  DL+ +
Sbjct: 510 IKILEGANQRVPRDLADM 527


>gi|330038915|ref|XP_003239739.1| RNA helicase [Cryptomonas paramecium]
 gi|327206664|gb|AEA38841.1| RNA helicase [Cryptomonas paramecium]
          Length = 425

 Score =  153 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 103/370 (27%), Positives = 178/370 (48%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+D  L  +++  +++ GY  P+PIQ ++IP VL   D+   +++GTGKT++F++P  
Sbjct: 55  LKFSDFHLKEEILLGIIELGYKAPSPIQEESIPAVLSGKDILARSKSGTGKTSAFLIP-- 112

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             L    ++    +  IL PTRELA Q +   +K GK   +L V +  GG+  +    ++
Sbjct: 113 -SLHMINSQNPYIQVTILVPTRELAFQTSYVCKKLGKYVSDLKVMVTTGGMSLQNDIVRM 171

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   +LI TP RI D   +G   ++  +IL++DEAD++L    +  I+ +++      +
Sbjct: 172 SQVIHILIGTPSRIFDLLEKGIADLSKCKILILDEADKLLSNELVKKIETMSNDYMPLDK 231

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +  +          ++      R            ++            K       L
Sbjct: 232 QTILISATFP---ITVKHIKDTITRSPFEINLMEELVLKEILQYYAFTRESKKIDCITFL 288

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   K  IIFCN    V  L   + + G+    IH  + Q +R +I   FK     ++
Sbjct: 289 LKKIHKKQSIIFCNSSNRVELLSKKISQLGYCCYYIHAKMQQANRNRIFHEFKTNKYGIL 348

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +ASDL  RG+DI  +  V NFD+P  +E Y+HRIGR GR G+ G A + V ++D   +  
Sbjct: 349 IASDLFTRGIDIISIELVINFDLPKSSETYLHRIGRCGRFGKGGIAISFVTEDDKLDLHK 408

Query: 360 IEKLIEKKVD 369
            EK +  K++
Sbjct: 409 FEKELNTKLN 418


>gi|184200491|ref|YP_001854698.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
 gi|183580721|dbj|BAG29192.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
          Length = 555

 Score =  153 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 144/453 (31%), Positives = 233/453 (51%), Gaps = 20/453 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD G+   +V A+   G   P PIQ  T+P+ L   D+ G A+TGTGKT  F +P L 
Sbjct: 33  SFADFGVRQDIVDALAAHGITSPFPIQAMTLPIALSGQDIIGQAKTGTGKTLGFGIPALQ 92

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                     +  A+   P+ LI+ PTRELA QV  +     K  N  VA + GG P+E+
Sbjct: 93  RAVGRDDAGWEQLAKPGAPQALIVVPTRELAVQVGSDLSIAAKTRNARVATIYGGRPYES 152

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  +LE+G +V++ TPGR++D   +  L ++++ ++V+DEAD MLD+GF+P ++ + + V
Sbjct: 153 QIAELEKGVEVVVGTPGRLIDLNRQHFLDLSHVRMVVLDEADEMLDLGFLPDVEKLLATV 212

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQT+LFSATM   +  ++  ++  P  I    P       +   V   A +  K  +
Sbjct: 213 PAVRQTMLFSATMPGPVVAMARRYMTRPMHIRAAAPDEGTTKKDIRQVIYRAHHLDKDEV 272

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + ++LQ++      IIF   K+    L   L  +GF+   +HG++ Q +R + L  F+  
Sbjct: 273 VARILQAEGRG-RSIIFTRTKRAAAKLADELIHRGFAAAPLHGDLGQGAREQALRAFRNS 331

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV NF  P   + Y+HR GRTGRAG  G A T V  +D+
Sbjct: 332 KVDVLVATDVAARGIDVEDVTHVINFQCPEDEKTYLHRTGRTGRAGNKGTAITFVDWDDV 391

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                I+K +E  +            P+E    ++H ++  N  IP+ + G   + +   
Sbjct: 392 PRWRLIDKALELGIPE----------PVETYSSSEHLYSDLN--IPRTAKGKLPKSQRTL 439

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
                  +++       + D + +     G  G
Sbjct: 440 EGLDAEEMEDLGDARPRRDDKRSSGGPRNGSGG 472


>gi|158298027|ref|XP_318117.4| AGAP004711-PA [Anopheles gambiae str. PEST]
 gi|157014611|gb|EAA13218.5| AGAP004711-PA [Anopheles gambiae str. PEST]
          Length = 613

 Score =  153 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 130/395 (32%), Positives = 204/395 (51%), Gaps = 16/395 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L   V+ A+      KP+PIQ++ IP VL   D+ GIA TG+GKT  FVLP++ 
Sbjct: 175 TFREMKLPKAVLAALAKRNIKKPSPIQVQGIPAVLAGRDLIGIAFTGSGKTLVFVLPIIM 234

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGI 110
              +   R+       P  LI+ P+RELA Q  D  + Y ++        +   L IGG+
Sbjct: 235 FCLEQELRLPFIKREGPYGLIICPSRELAKQTHDIIQYYCRHLQEAGMPEIRTVLAIGGV 294

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
           P       +++GA +++ TPGR++D  ++  + ++    L +DEADRM+DMGF   ++ I
Sbjct: 295 PVNDAIAIIQQGAHIMVATPGRLMDMLDKKLVTLDVCRYLCMDEADRMIDMGFEEDVRTI 354

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A               +
Sbjct: 355 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASMNVTQDVEYVKQ 410

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K++V  +   L  +G    AIHG  DQ  R + + +
Sbjct: 411 EAKVVYLLECLQKTPPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERYRSVES 470

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+     ++VA+D+A++GLD PDV HV N+D+P+  ENY+HRIGRTGR+G  G A T + 
Sbjct: 471 FRNQEKDVLVATDVASKGLDFPDVQHVINYDMPDDIENYVHRIGRTGRSGSKGLATTFIN 530

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
           K  +   +  ++ L+ +    +   L  L    EK
Sbjct: 531 KATEQFVLLDLKHLLIEAQQKVPPFLGELCSETEK 565


>gi|301615062|ref|XP_002936986.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Xenopus
           (Silurana) tropicalis]
          Length = 614

 Score =  153 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 128/390 (32%), Positives = 197/390 (50%), Gaps = 16/390 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 174 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 233

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGK------NYNLTVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y          +L  AL IGG+
Sbjct: 234 FCLEQEKRLPFAKREGPYGLIICPSRELARQTHSIIEYYCHLLQEDNFPHLRTALCIGGM 293

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +++G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 294 SVKEQMETIKQGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEEDIRTI 353

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     +      A       +       +
Sbjct: 354 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPITINVGRAGAASLDVIQEVEYVKE 409

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 410 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 469

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+E    ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 470 FREEKKDVLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 529

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           K  D   +  ++ L+ +    +   L  LN
Sbjct: 530 KSCDESVLMDLKALLMEAKQRVPPVLQVLN 559


>gi|119614682|gb|EAW94276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_a [Homo
           sapiens]
          Length = 828

 Score =  153 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 221/379 (58%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 144 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 203

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 204 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 263

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 264 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 323

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 324 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 383

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++
Sbjct: 384 EFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 442

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 443 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 502

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 503 LVRNLEGANQHVSKELLDL 521


>gi|321464143|gb|EFX75153.1| hypothetical protein DAPPUDRAFT_226459 [Daphnia pulex]
          Length = 447

 Score =  153 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 204/389 (52%), Gaps = 20/389 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL  ++  A     + +PTPIQ + IPL LQ  DV G+A+TG+GKT +F LPML 
Sbjct: 26  TFVELGLRSELEEACNLLKWTEPTPIQREAIPLALQGRDVIGLAETGSGKTGAFTLPMLH 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     R+     LIL PTRELA Q+++  E  G +  +  A+++GGI   +Q+  L +
Sbjct: 86  SLLSNPQRLFG---LILTPTRELAFQISEQIEALGSSIGVKCAVIVGGIDMISQSLMLAK 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR++DH    K         +                  I   +P  R+TL
Sbjct: 143 KPHIVIATPGRLVDHLENTKGFNLKSLKYLEV--------------DKILKSIPRERRTL 188

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT ++QK+    L NP R+++++   T + +   +V       K   +    L +
Sbjct: 189 LFSATMTSKVQKLQRASLVNPVRVQISSKYQTVDKLLQYYVFIPL---KMKDVYLVHLLN 245

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + ++FC+   + +     L   G S   +HG + Q  R+  L+ FK     +++A
Sbjct: 246 EAAGHSVMVFCSTCSSTLRTSLLLRALGISAVPLHGQMTQNKRLAALNKFKARNRGVLLA 305

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR GKA + V + D++    IE
Sbjct: 306 TDVASRGLDIPHVDWVINYDIPTHSKDYIHRVGRTARAGRSGKAISFVTQYDVELYQRIE 365

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
            L+ K++     +   +    E++  AQ 
Sbjct: 366 HLLGKQLPLYGLEEGDVMSLQERVAEAQR 394


>gi|303317730|ref|XP_003068867.1| ATP-dependent RNA helicase DRS1, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240108548|gb|EER26722.1| ATP-dependent RNA helicase DRS1, putative [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 840

 Score =  153 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 146/454 (32%), Positives = 224/454 (49%), Gaps = 24/454 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  LS  ++  +   G+  PTPIQ K IP+ L   D+ G A TG+GKTA+F++P+L 
Sbjct: 320 TFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPIGLLGKDLVGGAVTGSGKTAAFIIPILE 379

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++
Sbjct: 380 RLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKQ 439

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 440 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILNTIPKSRQT 499

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTD + K+    L  P R+ V++   T  T+   FV        K      LL 
Sbjct: 500 MLFSATMTDSVDKLIRVGLNRPVRLMVDSKKHTVGTLVQEFVRLRPGREGKRMGYLVLLC 559

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       I+F  QKK            G     +HG++ Q  R+  +  F++G +  ++
Sbjct: 560 NTIYTNRVIVFFRQKKEAHRARIIFGLLGLKAAELHGSMSQEQRINAVEAFRDGKVPFLL 619

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + A 
Sbjct: 620 ATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAA 679

Query: 361 --------EKLIEK------------KVDWLNGDLSSL---NPPLEKIDIAQHNHARKNN 397
                    K++ +            KV+ +  ++  +       +++  A+    R  N
Sbjct: 680 VKAGRAQGAKIVSRVVDPAVADEWASKVEEMQAEIEDILKEEKEEKQLAQAEMQVKRGQN 739

Query: 398 PIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKL 431
            I  +S    R K+ +   +      +   +S+L
Sbjct: 740 LIKHESEIMARPKRTWFETEREKREAKKRALSEL 773


>gi|307245417|ref|ZP_07527505.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254371|ref|ZP_07536209.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258830|ref|ZP_07540562.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306853758|gb|EFM85975.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862670|gb|EFM94626.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867181|gb|EFM99037.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 412

 Score =  153 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 124/403 (30%), Positives = 203/403 (50%), Gaps = 6/403 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   V+ A+   G+   TPIQ KT+P+ L   D+ G AQTGTGKT +F++     
Sbjct: 10  FIDFPIHENVLAALDSKGFEFCTPIQAKTLPITLAGQDIAGQAQTGTGKTLAFLIATFHY 69

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                       PR +IL PTRELA Q+  + E   K+ +L +AL  GG  ++ Q + +E
Sbjct: 70  LLTNDSETNKNQPRAIILAPTRELAVQIGSDAELLVKHSDLKLALAYGGDGYDKQVQAIE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ T GR++D+  +G + ++ ++++V+DEADRM D+GFI  I+ +    P   Q 
Sbjct: 130 QGVDILVGTTGRVIDYVKQGIINLDKVQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEQR 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L    + T   +     +        +        T        +   ++    L   L 
Sbjct: 190 LTMLFSATLSPRVRELAYEDMDNAQYI-EIEPLQRTGHRIKEELFYPSNEDKMALLLTLL 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     +IF N K     + + L   G  V  + G+I Q+ R+ +L +F +G + ++V
Sbjct: 249 EEEWPDRCMIFANTKHKCEEIWNYLVADGHRVGLLTGDIAQKKRLALLDSFTKGQLDILV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL IP+V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +    ++ AI
Sbjct: 309 ATDVAARGLHIPEVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISFACERYAVNLPAI 368

Query: 361 EKLIEKKVDWLNGD---LSSLNPPLEKIDIAQHNHARKNNPIP 400
           E  I   +     D   L +L  P        +   ++ + I 
Sbjct: 369 EAYIGHHIPVSQYDSGALLTLPKPTRSRTTRSYQTKKRQSAIS 411


>gi|145478351|ref|XP_001425198.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124392267|emb|CAK57800.1| unnamed protein product [Paramecium tetraurelia]
          Length = 472

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 194/380 (51%), Gaps = 3/380 (0%)

Query: 1   MDFAD-LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           + F D       +   ++ AG+  PTPIQ ++  + L  HD+ GIAQTG+GKT +F+LP 
Sbjct: 69  LRFEDVYCFPRPLQELIVKAGFPSPTPIQAQSWSIGLTGHDLIGIAQTGSGKTLAFLLPA 128

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  +     +   P+ LI+ PTREL  Q+ + F K+     L  A L GG     Q  +L
Sbjct: 129 IIHILAQLKQNSDPQCLIMAPTRELTHQIYEQFIKFSVGSGLKAACLFGGQEKYIQKNQL 188

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   +LI  PGR++D    G   +  I  LV+DEADRMLDMGF P I+ I +     RQ
Sbjct: 189 NQHPHILIACPGRLIDLVESGCTTLKGITFLVLDEADRMLDMGFEPSIRKIVAQTRAERQ 248

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT   E+Q ++ +F                   +            +     + +
Sbjct: 249 TMLFSATWPKEVQSLALDFCTQQPIHIQIGSLDLTSNRQIQQKVLILTKE-QKEEKLREI 307

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  +IFC  K     L   L ++G    ++HG+  Q  R  ++++FK G   ++
Sbjct: 308 LKSLGPKKILIFCQTKMKCDQLQLYLIQEGMRCKSLHGDKRQSERDFVMNSFKRGDTTVL 367

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHID 358
           VA+D+A+RGLDI D+  V NFD+P   E+Y+HRIGRTGRAG  G + +L  + ED K   
Sbjct: 368 VATDVASRGLDIKDIEFVINFDMPKLIEDYVHRIGRTGRAGAQGVSISLFDSYEDAKLAG 427

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +  + +  +LS L
Sbjct: 428 DLVGVLRESQNEVPSELSRL 447


>gi|324502652|gb|ADY41165.1| ATP-dependent RNA helicase an3 [Ascaris suum]
          Length = 656

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 135/398 (33%), Positives = 204/398 (51%), Gaps = 19/398 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L P V   +  +GY KPTP+Q  +IP ++QR DV   AQTG+GKTA+F++P++ 
Sbjct: 107 SFDDLALHPWVQENIRKSGYSKPTPVQKYSIPTLMQRRDVMSCAQTGSGKTAAFLIPLIN 166

Query: 62  IL-------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLI 107
            +                  R   P  LIL PTRELA Q      K+G   N+T A L  
Sbjct: 167 QILRNGPDAIRPPQLMNNGRRAMFPVALILAPTRELAMQTHKEALKFGYRTNITSAILYG 226

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           G   +  Q  KL  G  +LI TPGR+LD   +G +L+     LV+DEADRMLDMGF P I
Sbjct: 227 GRENYRDQINKLRIGCHILIATPGRLLDVVRQGYVLLQECTFLVLDEADRMLDMGFEPQI 286

Query: 168 QNITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I       ++ +    +FSAT   E+Q ++++FL             +        V 
Sbjct: 287 RQIVEQNGMPQKGMRVTAMFSATFPKEIQVLAQDFLLPNYVFLAVGRVGSTSENIIQKVL 346

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
              ++ KK  L++ L    +     ++F   K+   +L   L++  ++V  IHG++ Q  
Sbjct: 347 WVEEHEKKNFLMELLDADANKG-LTLVFVETKRGANDLAWFLQRNNYNVVPIHGDLKQFE 405

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDIP+V HV NFD+P+  + Y+HRIGRTGR G  G
Sbjct: 406 RERHLEMFRTGEANVLVATAVAARGLDIPNVKHVINFDLPSDIDEYVHRIGRTGRVGNVG 465

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           +A +    ++      + +L+ +    +   L  +   
Sbjct: 466 QATSFFNDKNRNLGRDLAELLVESNQEMPEWLDPIAKE 503


>gi|146300157|ref|YP_001194748.1| DEAD/DEAH box helicase domain-containing protein [Flavobacterium
           johnsoniae UW101]
 gi|146154575|gb|ABQ05429.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae
           UW101]
          Length = 634

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 214/373 (57%), Gaps = 9/373 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLP 58
           M+ F  LGL+  ++ A+LD G+  P+ +Q K IPL+L++  D+  +AQTGTGKTA+F  P
Sbjct: 1   MNKFEQLGLNESLLKAILDLGFENPSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGFP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNK 117
           ++  ++      +    L+L PTREL  Q+ +  + Y K       + + G      Q +
Sbjct: 61  LIQKIDADNRNTQA---LVLSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQAR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +++RGA +++ TPGR+ D  NRG + + NI+  ++DEAD ML+MGF   I +I S  P  
Sbjct: 118 EIKRGAQIIVATPGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYEDIVSILSDTPDQ 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           + T LFSATM  E+ ++++ F+  P  I V   +             Y   ++      +
Sbjct: 178 KNTWLFSATMPQEVARIAKQFMSEPVEITVGAKN---SGSATVSHEFYLVNARDRYEALK 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   +     ++FC  K++   +   L + G+S  A+HG++ Q  R  ++ +F+   IQ
Sbjct: 235 RLADANPDIFSVVFCRTKRDTQAVAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ +V HV N+ +P+  E Y HR GRTGRAG+ G +  +V K +++ I
Sbjct: 295 MLVATDVAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKI 354

Query: 358 DAIEKLIEKKVDW 370
            +IE++I++K + 
Sbjct: 355 SSIERIIKQKFEE 367


>gi|68487950|ref|XP_712192.1| hypothetical protein CaO19.13973 [Candida albicans SC5314]
 gi|68488947|ref|XP_711718.1| hypothetical protein CaO19.6652 [Candida albicans SC5314]
 gi|74656119|sp|Q59PR3|DBP8_CANAL RecName: Full=ATP-dependent RNA helicase DBP8
 gi|46433039|gb|EAK92496.1| hypothetical protein CaO19.6652 [Candida albicans SC5314]
 gi|46433563|gb|EAK92999.1| hypothetical protein CaO19.13973 [Candida albicans SC5314]
 gi|238880002|gb|EEQ43640.1| hypothetical protein CAWG_01884 [Candida albicans WO-1]
          Length = 440

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 209/447 (46%), Gaps = 18/447 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLG++  +  ++       PT IQ   IP +L+ HD  G A+TG+GKT +F  PML
Sbjct: 1   MSFNDLGVAKWLSESLDAMKIYTPTAIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T   +          LIL PTRELA Q+A+ F   G N N+ VA+++GG  F  Q   L+
Sbjct: 61  TQWSE---DPFGIFGLILTPTRELALQIAEQFAALGANMNIKVAVVVGGEDFVQQTLALQ 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILV------IDEADRMLDMGFIPYIQNITSLV 174
           R    +I TPGR+ DH         +    V        +       G            
Sbjct: 118 RKPHFVIATPGRLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFDVLPT 177

Query: 175 PFTRQTLLFSATMTDELQ-----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
              RQTLLF+AT+TD ++       +                    +           Y 
Sbjct: 178 SDKRQTLLFTATITDAVRALKEKPPTPGKPPVFMHEVETVDKVAIPSTLQISYVFVPSYV 237

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  L   L   Q      +IF N+      L   L K  F V ++H  + Q  R   L 
Sbjct: 238 KEAYLNSILHLEQFKDSTAVIFVNRTTTAEVLRRMLRKLDFRVASLHSEMPQSERTNSLH 297

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G  ++++A+D+A+RGLDIP V  V NFD+P   +++IHR+GRT RAGR G A +++
Sbjct: 298 RFKAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVSII 357

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            ++DI  I +IE+ I KK++ L  D++  N   E +  +  + A++ + +      F  R
Sbjct: 358 GEKDIDRIQSIEERINKKMELLE-DVNDDNVIKESL--SATSVAKRESLMEMDKENFGER 414

Query: 410 KKNYSSQKSHIPLKESEKISKLQQDIQ 436
           KK  + +K  +   + E+++K ++  +
Sbjct: 415 KK-INRKKHGLDKVKPERVTKPKKSKK 440


>gi|146414784|ref|XP_001483362.1| hypothetical protein PGUG_04091 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 433

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 128/440 (29%), Positives = 207/440 (47%), Gaps = 18/440 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLG+S  ++ A+       PT IQ + IP +L   D  G A+TG+GKT +F  PM+
Sbjct: 1   MLFKDLGVSKWLLEALAAMKIRLPTSIQAECIPQILAGRDCIGGAKTGSGKTIAFAAPMM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T   +          L+L PTRELA Q+A+ F   G + N+ VA+++GG     Q  +++
Sbjct: 61  TKWSE---DPFGIYGLVLTPTRELALQIAEQFLALGASMNIKVAVVVGGEDMVKQALEIQ 117

Query: 121 RGADVLICTPGRILDHFNRGKLL------MNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           +    +I TPGR+ DH                  +L   +       G            
Sbjct: 118 KSPHFIIATPGRLADHILNSGDDTVGGLKRIKFLVLDEADRLLSNSFGSDLERCFKILPD 177

Query: 175 PFTRQTLLFSATMTDELQ-----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
              RQTLLF+AT+TD ++      V E          V+                   Y 
Sbjct: 178 ASKRQTLLFTATVTDAVRALKDKPVPEGKKPVFIHEIVSKDQVAIPATLTISYVFVPSYV 237

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  L   L+  +      I+F N+      L  +L K    V ++H  + Q  R   L 
Sbjct: 238 KEAYLHNILVLPKYEKALAIVFVNRTYTAEILRRTLRKLDIRVASLHSEMPQSERTNSLH 297

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+ G  ++++A+D+A+RGLDIP+V  V N D+P   ++YIHR+GRT RAG+ G + ++V
Sbjct: 298 RFRAGAARVLIATDVASRGLDIPNVELVVNQDIPADPDDYIHRVGRTARAGKKGGSVSIV 357

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           +++D++ I AIE  I KK+D L  +++      E + I     A++ +    +  GF  +
Sbjct: 358 SEKDVERILAIENHINKKMDLLE-EVNDDKIIKESLSIV--TAAKRESVADMEKEGFGEK 414

Query: 410 KKNYSSQKSHIPLKESEKIS 429
           +K  + +K     ++S+K  
Sbjct: 415 RK-INKRKREERTRDSKKRK 433


>gi|157413572|ref|YP_001484438.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9215]
 gi|157388147|gb|ABV50852.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9215]
          Length = 593

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 123/412 (29%), Positives = 202/412 (49%), Gaps = 13/412 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D G +  ++ ++++ GY  PTPIQ   IP ++   D+ G AQTGTGKTA+F LP+   
Sbjct: 53  FLDFGFNQSILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPL-IE 111

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                  +     ++                   ++ N     + GG  +  Q   L+R 
Sbjct: 112 KLTNNKELNAKVLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKRK 171

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGRI+DH  +G   + +I  LV+DEAD ML+MGF+  I+ I   +P  +Q +L
Sbjct: 172 VDVVVGTPGRIMDHIRQGTFKIKHINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVL 231

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++ +++ +L +P  I + +     +         +    +   L       +
Sbjct: 232 FSATMPSEIRNIAKKYLNDPAEILIKS----VKKETQLISQKFLYVQRHHKLDALKRILE 287

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  IIF   K    ++  +LE  G +V  ++G+I Q  R   +   K+G I ++VA+
Sbjct: 288 LNNEGVIIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVAT 347

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  +  V N+D P   E Y HRIGRTGRAGR G+A   V + +   +  +E 
Sbjct: 348 DVAARGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLEN 407

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
               K++ +N        P  KI I +    +  + + + S   D  ++N +
Sbjct: 408 STRTKIEEINI-------PSNKI-INEKRMEKLIDNVNESSLAKDENEENKA 451


>gi|332978229|gb|EGK14960.1| ATP-dependent RNA helicase RhlE [Psychrobacter sp. 1501(2011)]
          Length = 383

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 115/381 (30%), Positives = 193/381 (50%), Gaps = 9/381 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           + F DL LS  V+ +V + G+ + TPIQ K +P  L   D  G AQTGTGKTA+F++ + 
Sbjct: 5   ITFDDLALSESVLKSVKELGFTRLTPIQAKILPHTLAGQDAIGQAQTGTGKTATFLITII 64

Query: 60  -----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                          +  PR +IL PTRELA Q+ ++     ++ +L    ++GG+ +E 
Sbjct: 65  EALLKRPFAADEMRYLGEPRAVILAPTRELANQIFEDAIGLTQHTDLHSVCIMGGVDYEK 124

Query: 115 QNKK-LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           Q         D+LI TPGR++D  ++G + ++ +E  V+DEADRMLDMGFIP I+ +   
Sbjct: 125 QTAALDHAFTDILIATPGRLIDLIHKGHVFLDRVEAFVLDEADRMLDMGFIPDIKRLMRY 184

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P          + T    +   N         V                 +   ++   
Sbjct: 185 MPANTDRQSLLFSAT--FNQDVMNLAYQWLSNPVFVEIKPEHKTSDLVEQHFYLLTESDK 242

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                        + +I    +K+ V   ++      +V  + G++DQ  R + L NFK 
Sbjct: 243 FKALNRILMAEDTHKVIVFANRKDQVKRLYNRLSAEHNVVMLSGDVDQSKRERYLDNFKN 302

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G  +++VA+D+A RG+ + D+ HV N+ +P++ ++Y+HRIGRTGRAG+ G + + V+++D
Sbjct: 303 GDAKVLVATDVAGRGIHVDDISHVVNYTLPDQPDDYVHRIGRTGRAGQQGVSISFVSEDD 362

Query: 354 IKHIDAIEKLIEKKVDWLNGD 374
             ++ AIE  ++ K+     D
Sbjct: 363 AFNLPAIEAHLDTKLKLEQLD 383


>gi|254502530|ref|ZP_05114681.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
 gi|222438601|gb|EEE45280.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
          Length = 430

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 152/393 (38%), Positives = 222/393 (56%), Gaps = 5/393 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR--VRM 72
           A+ D GY  PTPIQ K IPL+L   D+ G+AQTGTGKTA+F LP++  L     R   + 
Sbjct: 16  AIKDNGYEAPTPIQQKAIPLILDGQDLMGLAQTGTGKTAAFGLPLIERLLAEPRRAAPKG 75

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
            R LIL PTREL  Q+A N   + K   L V  ++GG+    Q K++ +G D+L+ TPGR
Sbjct: 76  TRALILAPTRELVNQIAKNLISFLKTTPLRVTSVVGGVSINGQVKRMSKGTDILVATPGR 135

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           +LD  +R  + + +   LV+DEAD+MLD+GFI  ++ I  LV   RQTLLFSATM  ++ 
Sbjct: 136 LLDLVDRNAVDLGSASYLVLDEADQMLDLGFIHALRKIAGLVAKDRQTLLFSATMPKQIN 195

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           ++++++L +P R+EV+    TA+ +       +   SK        + S       ++FC
Sbjct: 196 ELAQSYLTDPARVEVSPVGRTADKV---RQKVHFMDSKAKTGFLIDVLSDQPDDMSLVFC 252

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             K     L   + + G +  +IHGN  Q  R + +   + G I+++VA+D+AARG+DIP
Sbjct: 253 RTKHGAERLMRKMAQAGIAAGSIHGNKSQNQRERAIKELRSGAIKVLVATDVAARGIDIP 312

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
            V HV+NF++P  AE Y+HRIGRT RAG  G A  L A E+I     IEKLI   ++  +
Sbjct: 313 GVSHVYNFELPEVAEAYVHRIGRTARAGADGDAVALCAPEEIGLFRQIEKLIGIDIEVAS 372

Query: 373 GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           G+   L+          +       P  QK+ G
Sbjct: 373 GEAPPLSAAKSAKRGKNNKSGGGGKPRFQKAAG 405


>gi|189208750|ref|XP_001940708.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187976801|gb|EDU43427.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 805

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 143/449 (31%), Positives = 221/449 (49%), Gaps = 25/449 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++  +   G+ +PTPIQ K +P+ +Q  DV G A+TG+GKTA+F++P+L 
Sbjct: 276 SFQAMSLSRPILRGLASVGFTEPTPIQNKAVPIAMQGKDVVGGAETGSGKTAAFLIPILE 335

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  I  PTRELA Q  +   K     ++T AL+ GG     Q   L+ 
Sbjct: 336 RLLYRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSTRDQEAVLKT 395

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH +      + ++EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 396 RPDVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFESQLNEILTTIPKSRQT 455

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT  + K+    +  P R+ V+    T   +   FV        K       + 
Sbjct: 456 MLFSATMTSSVDKLIRIGMDKPVRLMVDAKKHTVAGLTQEFVRLRQGKEDKRLAYLMYIC 515

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F  QKK    +       G     +HGN+ Q  R++ +  F+ G    ++
Sbjct: 516 EKIYTEKVIVFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQSVEAFRSGKSAYLL 575

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI +V  V N++ P   E Y+HR+GRT RAGR G+A TL A+ D K +   
Sbjct: 576 ATDVASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQA 635

Query: 361 EKL--------------IEKKVDWLN--GDLSSLNPPLEK-------IDIAQHNHARKNN 397
            K               IE+   W+    DL      + K       + + + +  R  N
Sbjct: 636 VKASRDQGAKVVSRQVPIEETDRWMKKIKDLEDEIEEVLKEEKEERLLSVTERDLKRGEN 695

Query: 398 PIPQKSTGFDRRKKN-YSSQKSHIPLKES 425
            I  +     R ++  + S+K  +  +E 
Sbjct: 696 LITHEDEIKSRPRRTWFESEKDKMAEREK 724


>gi|110760457|ref|XP_391829.3| PREDICTED: putative ATP-dependent RNA helicase Pl10 [Apis
           mellifera]
          Length = 701

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 149/439 (33%), Positives = 220/439 (50%), Gaps = 22/439 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L+  +  ++  AGY KPTP+Q   IP+++ R DV   AQTG+GKTA+F++P+L 
Sbjct: 224 SFDEVKLTEIIKNSISLAGYDKPTPVQKYAIPIIIGRRDVMACAQTGSGKTAAFLVPILN 283

Query: 62  ILEKGRARV----------RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
            + +   R             P  L+L PTRELA Q+ D   K+     +  A++ GG  
Sbjct: 284 QIYESGPRPPPINSSGKRKHFPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGGSN 343

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q ++L+RG  +L+ TPGR++D   RGK+ ++N   LV+DEADRMLDMGF P I+ I 
Sbjct: 344 IVDQMRELDRGCHLLVATPGRLVDMLGRGKIGLHNCRYLVLDEADRMLDMGFEPQIRRIV 403

Query: 172 SLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
                      QTL+FSAT   E+Q ++ +FL N   + V    ST+E I    V     
Sbjct: 404 QEDTMPPTGERQTLMFSATFPKEIQMLARDFLSNYIFLAVGRVGSTSENITQKIVWVEEH 463

Query: 228 YSKKCALLQQLLQSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
             +   L      +          ++F   KK    L   L + G+ V +IHG+  QR R
Sbjct: 464 DKRSYLLDLLQASNFSDPSAESLTLVFVETKKGADMLEEYLHQMGYPVTSIHGDRTQRER 523

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
              L  F+ G   ++VA+ +AARGLDIP V HV NFD+P   E Y+HRIGRTGR G  G 
Sbjct: 524 EDALRRFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGNLGL 583

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           A +    ++I  +  +  L+ +    L   L  +     +   +     R  +   + S 
Sbjct: 584 ATSFFNNKNINLVRDLVSLLVEANQELPPWLDDM---FSEARYSGGGSRRAGSTKGRFSG 640

Query: 405 GFDRRKKNYSSQKSHIPLK 423
           GF  R  +Y  Q S    +
Sbjct: 641 GFGAR--DYRQQPSSGSAR 657


>gi|3776021|emb|CAA09211.1| RNA helicase [Arabidopsis thaliana]
          Length = 441

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 193/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F      
Sbjct: 69  TFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFC---SG 125

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L++    +   + L+L PTRELA Q+       G    +     +GG       + L+ 
Sbjct: 126 VLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQS 185

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 186 GVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVG 245

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 246 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL--YE 303

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 304 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 363

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   +  ED + +  I+
Sbjct: 364 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQ 423

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     V+ L  +++ L
Sbjct: 424 RFYNVVVEELPSNVADL 440


>gi|330915742|ref|XP_003297149.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
 gi|311330325|gb|EFQ94748.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
          Length = 805

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 143/449 (31%), Positives = 221/449 (49%), Gaps = 25/449 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++  +   G+ +PTPIQ K +P+ +Q  DV G A+TG+GKTA+F++P+L 
Sbjct: 276 SFQAMSLSRPILRGLASVGFTEPTPIQNKAVPIAMQGKDVVGGAETGSGKTAAFLIPILE 335

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  I  PTRELA Q  +   K     ++T AL+ GG     Q   L+ 
Sbjct: 336 RLLYRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSTRDQEAVLKT 395

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH +      + ++EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 396 RPDVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFESQLNEILTTIPKSRQT 455

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT  + K+    +  P R+ V+    T   +   FV        K       + 
Sbjct: 456 MLFSATMTSSVDKLIRIGMDKPVRLMVDAKKHTVAGLTQEFVRLRQGKEDKRLAYLMYIC 515

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  I+F  QKK    +       G     +HGN+ Q  R++ +  F+ G    ++
Sbjct: 516 EKIYTEKVIVFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQSVEAFRSGKSAYLL 575

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI +V  V N++ P   E Y+HR+GRT RAGR G+A TL A+ D K +   
Sbjct: 576 ATDVASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQA 635

Query: 361 EKL--------------IEKKVDWLN--GDLSSLNPPLEK-------IDIAQHNHARKNN 397
            K               IE+   W+    DL      + K       + + + +  R  N
Sbjct: 636 VKASRDQGAKVVSRQVPIEETDRWMKKIKDLEDEIEEVLKEEKEERLLSVTERDLKRGEN 695

Query: 398 PIPQKSTGFDRRKKN-YSSQKSHIPLKES 425
            I  +     R ++  + S+K  +  +E 
Sbjct: 696 LITHEDEIKSRPRRTWFESEKDKMAEREK 724


>gi|316969700|gb|EFV53757.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
          Length = 693

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 143/440 (32%), Positives = 229/440 (52%), Gaps = 16/440 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F ++ LS  +  A+    YV PTPIQ   IP+ L   D+C  A TGTGKT ++++P+L
Sbjct: 152 LTFEEMNLSRSLNKAISSMNYVNPTPIQSACIPVALLGKDICACAATGTGKTCAYMIPIL 211

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L       R+ R L++ PTRELA QV +      K  ++++AL  GG+  ++Q   L 
Sbjct: 212 ERLLFKPVGRRITRVLVMVPTRELAMQVYETGTTLAKYTSISIALSTGGMDLKSQEAALR 271

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              DV+I TPGR++DH  N     +N +EILV+DEADRMLD  F   +  I  L   TRQ
Sbjct: 272 LNPDVVIATPGRLIDHLHNSPGFNLNGVEILVLDEADRMLDEHFEEQMLEIMRLCSPTRQ 331

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATMTD+++ ++   L+ P ++ VN  +  A  +   FV    +           L
Sbjct: 332 AMLFSATMTDKVKDLASVSLKKPVKLFVNENTEMALNLRQQFVRIRKERECSREASLAAL 391

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      ++F   K+    L   L   G  V  +HGN+ Q  R+  L  FK+G + ++
Sbjct: 392 LKRSFTSKVLLFAGTKEVCHRLRLLLGLLGIRVAELHGNLSQAQRIDALEQFKKGVVDVL 451

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V  V N+ +P+  + Y+HR+GRT RAGR G A + V+++D K +  
Sbjct: 452 VATDVAARGIDVQGVKTVINYQMPHVFKLYVHRVGRTARAGRSGCAVSFVSEDDRKLVKE 511

Query: 360 IEKL----IEKKVDWLNGD--------LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           I K     I++++  LN D        +  L P +++I + +    R+ +   ++     
Sbjct: 512 IVKHCPTSIKRRI--LNKDAVESCQRMIDELLPEIDRI-VEEEKQERQLSIAEKQIAQAK 568

Query: 408 RRKKNYSSQKSHIPLKESEK 427
            + +N   Q       ++  
Sbjct: 569 AKLENDHHQAGATTSSKANN 588


>gi|67624705|ref|XP_668635.1| DEAD box protein [Cryptosporidium hominis TU502]
 gi|54659844|gb|EAL38406.1| DEAD box protein [Cryptosporidium hominis]
          Length = 441

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 133/371 (35%), Positives = 206/371 (55%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LG+  ++  A    G+  PT IQ KTIP+ L+  D+ G+A+TG+GKT SF++P+L
Sbjct: 28  VTFASLGVCKELCIACESLGWKTPTEIQKKTIPVALEGRDIIGLAETGSGKTGSFIIPIL 87

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   +        +IL PTREL  Q+++ F  +G   +L +A L+GG+    Q+  L 
Sbjct: 88  QRLLDDQ---VPMYAVILAPTRELCVQISEQFSAFGSLISLKIATLVGGLDMVMQSLSLA 144

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   +++ +PGR++DH  N     +  I+ LV+DEADR+L M F   +  I    P  R 
Sbjct: 145 KKPHIIVASPGRLVDHLENTKGFNIGGIKFLVMDEADRLLSMDFEIALNKIVESSPKNRT 204

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT ++ K+ +  L NP +I VNT   TA  +   ++       K        L
Sbjct: 205 TYLFSATMTTKVAKLQKISLSNPIKICVNTKYDTAANLMQYYMFIPF---KYKWSYFIGL 261

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFCN   N        ++ GF+  ++HG + Q  R+  L+ FK    +L+
Sbjct: 262 LQNLGQYTGIIFCNTCINCRRGDLLAKELGFNSISLHGRMSQSQRLSALNLFKGKQKRLL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
             +++ +RGLDIP V  V NFD+P  +++Y+HR+GRT RAGR G+A ++V + D++    
Sbjct: 322 FTTEVGSRGLDIPHVDFVINFDIPTSSKDYVHRVGRTARAGRSGRAISMVTQYDVETFQR 381

Query: 360 IEKLIEKKVDW 370
           IE  + KK+D 
Sbjct: 382 IEFALNKKLDE 392


>gi|74152734|dbj|BAE42635.1| unnamed protein product [Mus musculus]
          Length = 929

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 133/379 (35%), Positives = 219/379 (57%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 314 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 373

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 374 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 433

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 434 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 493

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L  +L+++G ++  +HG++DQ    K++S+FK+  I ++
Sbjct: 494 EFTSSG-SVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSEGNKVISDFKKKDIPVL 552

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 613 LVRNLEGANQHVSKELLDL 631


>gi|229844771|ref|ZP_04464910.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 6P18H1]
 gi|229812485|gb|EEP48175.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 6P18H1]
          Length = 415

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 197/379 (51%), Gaps = 4/379 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +    + R PR LIL PTREL+ Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 71  LLTHQDPNLKYRHPRALILAPTRELSVQISNDAEFLAKASGLKTALAYGGDGYDKQLQAI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P  + 
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L    + T   +     F       E        +T        +   ++    L   L
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMND-PEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTL 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G + ++
Sbjct: 250 MEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDIL 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ A
Sbjct: 310 VATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPA 369

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+ I   +     +  +L
Sbjct: 370 IEEYIGHSIPVSQYETEAL 388


>gi|195048170|ref|XP_001992482.1| GH24775 [Drosophila grimshawi]
 gi|193893323|gb|EDV92189.1| GH24775 [Drosophila grimshawi]
          Length = 977

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 124/387 (32%), Positives = 202/387 (52%), Gaps = 10/387 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L   V+  +   G+ KPT IQ +  P+ L   D+ GIAQTG+GKT +++LP + 
Sbjct: 240 NFEESSLPTHVIDEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIV 299

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNK 117
               +    R   P  L+L PTRELA Q+      YG           + GG     Q +
Sbjct: 300 HIGNQPPIMRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQVR 359

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LERG +V+I TPGR++D        +     LV+DEADRMLDMGF P I+ I   +   
Sbjct: 360 DLERGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 419

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ +++SAT   E+Q ++ +FL +  +I + + + +A       V    +  K   +++ 
Sbjct: 420 RQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICNENEKPQRMMRL 479

Query: 238 ------LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                    + +     IIF   K  V ++   +  +G++  +IHG+  Q  R  +L +F
Sbjct: 480 LKEITPSNNAANAGNKIIIFVETKIKVEDILQIIRNEGYTATSIHGDKSQSERDSVLRDF 539

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G   +++A+D+A+RGLD+ D+ +V N+D PN +ENY+HRIGRTGR  + G A+T    
Sbjct: 540 RNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTP 599

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           ++ K    +  ++E+     + +L  L
Sbjct: 600 DNAKQARELISVLEEAEQTPSQELLDL 626


>gi|303274675|ref|XP_003056653.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461005|gb|EEH58298.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1177

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 122/388 (31%), Positives = 199/388 (51%), Gaps = 7/388 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            +A  GLS +V+  +  +G+ KP PIQ + +P+++   D   +A+TG+GKT  ++LPM  
Sbjct: 484 TWAQAGLSNRVMELIRRSGFEKPMPIQCQCLPVIMSGRDCIAVAKTGSGKTLGYILPMLR 543

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               ++  A+   P  +I+ PTREL  Q+  +  K+G+   +    + GG    AQ  +L
Sbjct: 544 HIKDQREIAQGDGPVGMIMGPTRELVTQIGKDCRKFGRCAGMVAVSVYGGSGVAAQIGEL 603

Query: 120 ERGADVLICTPGRILDHFNR---GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RG +++ CTPGR++D           +  +   V+DEADRM DMGF P I  I + +  
Sbjct: 604 KRGCEIVACTPGRMIDILTTGAGRITNLRRVTYFVLDEADRMFDMGFEPQITRIMNNLRP 663

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L NP  I+V   S     IE            +     
Sbjct: 664 DRQTVMFSATFPHAMEALARAALTNPIEIQVGGRSVVNSDIEQLV--EMRPEEDRFLRAL 721

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL         IIF   +     +   L + G+   ++HG  +Q  R   +++FK    
Sbjct: 722 ELLGEWYERGKIIIFVASQDKCDRIFRDLLRSGYPCLSLHGGKEQTDRECTIADFKSDVC 781

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+ +AARGLD+ D+  V N+D PN  E+Y+HR+GRTGRAG  G A T +++E+ K 
Sbjct: 782 NILVATSVAARGLDVKDLRLVINYDTPNHLEDYVHRVGRTGRAGNKGTAVTFISEEEEKF 841

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
              + K +      +  DL ++     K
Sbjct: 842 APDLVKAMTDAKQPVPADLRTMADAYSK 869


>gi|297294301|ref|XP_002804411.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 [Macaca
           mulatta]
          Length = 705

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 131/424 (30%), Positives = 211/424 (49%), Gaps = 18/424 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 269 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 328

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             +            ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 329 AHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGH 388

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 389 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 448

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       V    Q+SK
Sbjct: 449 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSK 508

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 509 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 566

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 567 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 626

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L      +   LE+I  + +      +         D RK
Sbjct: 627 LESDNH------LAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTRK 680

Query: 411 KNYS 414
              S
Sbjct: 681 GKSS 684


>gi|146096170|ref|XP_001467723.1| ATP-dependent RNA helicase [Leishmania infantum JPCM5]
 gi|134072089|emb|CAM70788.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
 gi|322501693|emb|CBZ36774.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 614

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 121/393 (30%), Positives = 196/393 (49%), Gaps = 16/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA + L+P +   V    Y KPTP+Q   IP VL   D+   AQTG+GKTA++++P + 
Sbjct: 134 SFATMALAPALAENVNRCRYQKPTPVQKYGIPCVLNGSDLMACAQTGSGKTAAYLIPAIN 193

Query: 62  ILEKGRARVRMPRTL-------ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +         P          +L PTREL+ Q+ +   K+     +   ++ GG     
Sbjct: 194 FMLVNNLNRAKPTNSQSAPSALVLSPTRELSIQIYEEGRKFTYRTGIRCVVVYGGADPRH 253

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  +L RG  +L+ TPGR+ D F RG    +++  LV+DEADRMLDMGF P I+ I    
Sbjct: 254 QIHELTRGCGLLVATPGRLSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRAIVQGP 313

Query: 175 PFTRQTLL------FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
                         +SAT   E+Q+++  FL +   ++V    ST E I           
Sbjct: 314 DSDMPPPGERQTLLYSATFPKEIQQMAREFLYHHHFLQVGRVGSTTENITQDVRWVEDMD 373

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            +        +  +   +  ++F  +K++   L   L +      +IHG+  QR R + L
Sbjct: 374 KRG---CLLEVLKEHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEAL 430

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             FK G  +++VA+D+A+RGLDIP+V  V  +D+P+  ++Y+HRIGRTGRAG+ G A + 
Sbjct: 431 DIFKSGVCRVLVATDVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGRTGRAGKRGTAISF 490

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
              ++   +D +  L+ +    +  ++ +L   
Sbjct: 491 FNDKNRNIVDDLIPLLRETNQTVLPEVQALAKK 523


>gi|109077270|ref|XP_001100045.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 3
           [Macaca mulatta]
 gi|297294298|ref|XP_001099856.2| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 1
           [Macaca mulatta]
          Length = 725

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 131/424 (30%), Positives = 211/424 (49%), Gaps = 18/424 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 289 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 348

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             +            ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 349 AHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGH 408

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 409 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 468

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       V    Q+SK
Sbjct: 469 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSK 528

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 529 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 586

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 587 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 646

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L      +   LE+I  + +      +         D RK
Sbjct: 647 LESDNH------LAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTRK 700

Query: 411 KNYS 414
              S
Sbjct: 701 GKSS 704


>gi|195565659|ref|XP_002106416.1| GD16140 [Drosophila simulans]
 gi|194203792|gb|EDX17368.1| GD16140 [Drosophila simulans]
          Length = 800

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 133/439 (30%), Positives = 221/439 (50%), Gaps = 25/439 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   V+  +   G+ KPT IQ +  P+ L   D+ GIAQTG+GKT +++LP +
Sbjct: 238 VSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAI 297

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQN 116
                +    R   P  L+L PTRELA Q+      YG           + GG     Q 
Sbjct: 298 VHIGNQPPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQA 357

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+RG +V+I TPGR++D        +     LV+DEADRMLDMGF P I+ I   +  
Sbjct: 358 RDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 417

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ +++SAT   E+Q ++ +FL +  +I + + + +A       V    +  K   L+ 
Sbjct: 418 DRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVC 477

Query: 237 QLLQSQDTMKNG------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            L +      +G      I+F   K  V ++   +  +G++  +IHG+  Q  R  +L +
Sbjct: 478 LLNEISPIKNSGSNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKD 537

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   +++A+D+A+RGLD+ D+ +V N+D PN +ENY+HRIGRTGR  + G A+T   
Sbjct: 538 FRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFT 597

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ---HNHARKNNPIPQKSTGFD 407
            ++ K    +  ++E+             P    +D+A+    +   + N     ++G D
Sbjct: 598 PDNAKQARELISVLEEAGQ---------TPSQALLDLARSMPSSGGYRGNKRWNNNSGGD 648

Query: 408 RRKKNYSS---QKSHIPLK 423
           R    ++    Q+++ PL 
Sbjct: 649 RNTGGHNGIYQQRNNNPLN 667


>gi|170756598|ref|YP_001781574.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum B1 str.
           Okra]
 gi|169121810|gb|ACA45646.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum B1 str. Okra]
          Length = 376

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 142/370 (38%), Positives = 213/370 (57%), Gaps = 6/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS  ++  +     ++PTPIQ ++I L+   +DV   AQTGTGKT +F+LPM 
Sbjct: 2   IKFEELGLSDSIIDVLKKQRIIEPTPIQKESIMLIKNGNDVIAEAQTGTGKTLAFLLPMF 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      +   + LI+ PTRELA Q+ +   K  +  +L +    GG    +Q KKL+
Sbjct: 62  ENISP---DINAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH NR  L   +++ LV+DEAD ML MGF   +++I    P  RQT
Sbjct: 119 NNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++   +++PK I +     T + I            ++       + 
Sbjct: 179 LCFSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNI---KQVLIETTDRRKQEDLCKIL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     IIFC  K+ V  L  +L K+G++   +HG+I Q  R +I+ +FK   IQ ++
Sbjct: 236 DEENPFMAIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLI 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HVFN+D+P  AE+YIHRIGRTGRAG  G  F  VA +D + +  I
Sbjct: 296 ATDVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLGMI 355

Query: 361 EKLIEKKVDW 370
           E+ I+ K+  
Sbjct: 356 EREIKFKIPR 365


>gi|168017610|ref|XP_001761340.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687346|gb|EDQ73729.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 589

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 135/391 (34%), Positives = 208/391 (53%), Gaps = 15/391 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA++ L P +   +    Y KPTP+Q   IP+ L   D+   AQTG+GKTA+F  P++ 
Sbjct: 142 TFAEIDLGPALNENIRRCKYTKPTPVQRYAIPISLHGRDLMACAQTGSGKTAAFCFPIIA 201

Query: 62  ILEKGRA-------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            + +          R  +P  LIL PTREL+ Q++D  +K+     + V +  GG P   
Sbjct: 202 GIMRNTPPGRSRGGRKALPLALILSPTRELSCQISDEAKKFAYQTGIKVVVCYGGAPVHN 261

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q +++ERG D+L+ TPGR+ D   R ++ ++ +  L +DEADRMLDMGF P I+ I   +
Sbjct: 262 QLREMERGVDILVATPGRLSDLLERARVSLSMVRYLALDEADRMLDMGFEPQIRRIVEQM 321

Query: 175 PFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                   QT+LFSAT   E+Q+++ +FL N   + V    S+ E I            +
Sbjct: 322 DMPPAGERQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTELIVQRVEYVQDSDKR 381

Query: 231 KCALLQQLLQ----SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              +     Q            ++F   KK   +L   L + GF    IHG+  Q+ R  
Sbjct: 382 SMLMDLIHAQSALAPPGQQSLTLVFVETKKGADSLEDWLCRMGFPATTIHGDRSQQEREH 441

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L +F+ G   ++VA+D+AARGLDIP V HV NFD+P+  ++Y+HRIGRTGRAG+ G A 
Sbjct: 442 ALRSFRTGVTPILVATDVAARGLDIPHVAHVVNFDLPSDIDDYVHRIGRTGRAGKSGVAT 501

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
               ++D     ++ +L+ +    + G L++
Sbjct: 502 AFFNEKDQSLARSLAELMTESSQEVPGWLTN 532


>gi|67484120|ref|XP_657280.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|167395584|ref|XP_001741647.1| ATP-dependent RNA helicase eIF4A [Entamoeba dispar SAW760]
 gi|56474536|gb|EAL51901.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
 gi|165893771|gb|EDR21906.1| ATP-dependent RNA helicase eIF4A, putative [Entamoeba dispar
           SAW760]
          Length = 391

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 113/372 (30%), Positives = 197/372 (52%), Gaps = 5/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G+  +++ ++   G+ KP+ IQ + I  ++Q  ++   AQ+GTGKTA+F + +L 
Sbjct: 19  SFDAMGIKDELLRSIYSYGFEKPSAIQQRAIVPLMQGRNLIAQAQSGTGKTAAFSIGVLQ 78

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++      ++ + ++L PTRELA Q  +  +   +  ++     IGG       + L  
Sbjct: 79  QIDTN---SKVCQAILLSPTRELALQTQEVVKNLSQYLDIKTFACIGGTSVRETIEALRN 135

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LD  +R  +  N ++ L++DEAD ML  GF   +  I   +P T Q  
Sbjct: 136 GVQVVVGTPGRVLDMLDRQAIDPNTVKYLILDEADEMLSQGFKDQMYTILKSLPSTVQVG 195

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  +   +S+ F++NP +I V     T E I+  ++       K   L+      
Sbjct: 196 MFSATMPADALDISKKFMENPVKILVKKEELTLEGIKQFYIDVVKDEYKIDTLIDL--YQ 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN K  V  +   L+   + V   HG++    R  +L+ F++G  ++++ 
Sbjct: 254 VISVNQSVIFCNSKNRVEWIQRRLQAHNYPVSITHGDLTMEERNNVLNEFRQGATRILIT 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ +RG+D+  V  V NFD+P   E+YIHRIGR+ R GR G A   +  E++  I+ ++
Sbjct: 314 TDMLSRGIDVQQVSLVINFDMPVSDESYIHRIGRSARFGRKGVAIDFITTEEMDTINRLQ 373

Query: 362 KLIEKKVDWLNG 373
           K  E K+  L  
Sbjct: 374 KTYETKIVPLPK 385


>gi|229515773|ref|ZP_04405232.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
 gi|229347542|gb|EEO12502.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
          Length = 397

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 148/373 (39%), Positives = 219/373 (58%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +V  V   GY KPT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  ++YGK+  L    + GG+  +AQ ++L
Sbjct: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVDQYGKDTGLKSLAVFGGVDEQAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  +++P  I +    ++   I    +                 
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 238 INEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357

Query: 360 IE----KLIEKKV 368
           IE     LIE++V
Sbjct: 358 IESRLGHLIERRV 370


>gi|197246501|gb|AAI69082.1| Ddx23 protein [Rattus norvegicus]
          Length = 798

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 141/434 (32%), Positives = 209/434 (48%), Gaps = 35/434 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 370 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 429

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q
Sbjct: 430 WITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 489

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 490 GFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMP 549

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            + Q          E    +    ++  R  V   ++                       
Sbjct: 550 VSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 609

Query: 215 --ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             +  E      +     +       +  Q      IIF NQKK    L  SLEK G++ 
Sbjct: 610 AGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNA 669

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHR
Sbjct: 670 CTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHR 729

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     AQH  
Sbjct: 730 IGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHKP 783

Query: 393 ARKNNPIPQKSTGF 406
                   ++ T F
Sbjct: 784 GTILTKKRREETIF 797


>gi|82540694|ref|XP_724645.1| RNA helicase-1 [Plasmodium yoelii yoelii str. 17XNL]
 gi|23479359|gb|EAA16210.1| RNA helicase-1 [Plasmodium yoelii yoelii]
          Length = 443

 Score =  153 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 124/383 (32%), Positives = 201/383 (52%), Gaps = 7/383 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL+ K++  +   G+ KP+ IQ + I  +L+ +D  G AQ+GTGKTA+FV+  L 
Sbjct: 24  TFDALGLNEKLLRGIYSYGFEKPSAIQQRGIKPILKGYDTIGQAQSGTGKTATFVISSLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++          + LIL PTRELA Q+       G    +     +GG        KL++
Sbjct: 84  LINYDY---VACQALILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDIDKLKQ 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D  ++  L ++ +++ ++DEAD ML  GF   I  +   +    Q  
Sbjct: 141 GVHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQVA 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+ +++  F+++PK I V     T E I   +VA   +  K   L       
Sbjct: 201 LFSATMPQEILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLCDL--YE 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   II+CN +K V  L   +  + F+V  +HG++DQ+ R  I+  F+ G+ +++V 
Sbjct: 259 TLTITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVT 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK--EDIKHIDA 359
           +DL ARG+D+  V  V N+D+P   + YIHRIGR+GR GR G A   V    ++   +  
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPCSPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDKLKK 378

Query: 360 IEKLIEKKVDWLNGDLSSLNPPL 382
           IE     +++ +  ++   N  L
Sbjct: 379 IESYYSTQIEEMPLEVIKKNIIL 401


>gi|268529640|ref|XP_002629946.1| Hypothetical protein CBG03667 [Caenorhabditis briggsae]
 gi|187036409|emb|CAP24509.1| hypothetical protein CBG_03667 [Caenorhabditis briggsae AF16]
          Length = 565

 Score =  153 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 131/447 (29%), Positives = 223/447 (49%), Gaps = 14/447 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++LG+S  +   +        TP+Q   IP +L   D+ G A+TGTGKT +F +P+L 
Sbjct: 94  KFSELGVSSWITQQLQTMHIKTATPVQAACIPRILDGSDILGCARTGTGKTLAFAIPILQ 153

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L            LIL PTRELA Q+AD F   GK   L  ++++GG     Q ++L  
Sbjct: 154 KLSI---DPYGIYALILTPTRELAFQIADQFTAVGKPITLKCSVIVGGRSLIHQARELSE 210

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+ D       ++   I+  V+DEADRML+  +   ++ I   +P  RQT
Sbjct: 211 RPHIVVATPGRLTDLIESDPEVIAKKIQFFVLDEADRMLEGQYNDQLKPIFQSIPEKRQT 270

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           LL SAT+T  +  + +   + P   E    +  ++     +   V   A        + +
Sbjct: 271 LLLSATITQNINTLHKVSTRKPYFFEDKGKDDETTVDRLEQKFVVCPVAVKDAYLVYVVK 330

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++   + +IF    +    L +  E  GF V ++H  I Q+ R+  LS F+  T+Q
Sbjct: 331 NYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRSKTLQ 390

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ +D+A+RGLDIP V  V N +VP   + YIHR+GR+ RAGR G A + V + D++ +
Sbjct: 391 VIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVELL 450

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK-NNPIPQKSTGFDRRKK----- 411
            A+EK I KK+D L      +   + ++ +A+     K  N    +    +RRK+     
Sbjct: 451 QAVEKTIGKKLDELKVSAKHVTKYVTQVLVAKKEAELKLENQKFGERKEINRRKEMLMKG 510

Query: 412 -NYSSQKSHIPLKESEKISKLQQDIQE 437
            N      H+   ++ +++  ++ +++
Sbjct: 511 MNEEDVDRHLDEMKNRRVTSSKRKLEK 537


>gi|88797925|ref|ZP_01113512.1| probable ATP-dependent RNA helicase [Reinekea sp. MED297]
 gi|88779122|gb|EAR10310.1| probable ATP-dependent RNA helicase [Reinekea sp. MED297]
          Length = 448

 Score =  153 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 134/432 (31%), Positives = 210/432 (48%), Gaps = 7/432 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA   L PK+  A+   G+ +PT +Q  +IP  L   D+   A+TG+GKTA+++LP L  
Sbjct: 2   FASFDLHPKLTAAIEQHGWTEPTDVQTASIPQALDGKDLLISAETGSGKTAAYLLPALHR 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +   R      R L++ PTRELA QV  + E   +   L   ++ GG  F+ Q   L R 
Sbjct: 62  VLSERKPKAGIRVLVMVPTRELAQQVMKDCEALTQQTGLKTVIIRGGQEFQYQASLLRRN 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +++I TPGR+ +H N+    + ++E LV+DE DRMLDMGF   +  I   +    QTLL
Sbjct: 122 PEIVIATPGRMTEHLNKNSTDLLDVECLVLDECDRMLDMGFRDEVLAIAGQIRNDHQTLL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+           + N        P    E I    + +     K    L   L S 
Sbjct: 182 LSATLKHRGVSSVAKDILNDAEFIQIKPEMLQENIRQQRIFSDGPAHK--TKLVDWLLSH 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +T +  I+F   +     L ++L      V  +HG I+Q  R +I++ F++G + ++VA+
Sbjct: 240 ETFQKAIVFTKTRVQAEELANNLRLHQKRVATLHGEIEQDERNRIMTRFRDGVVDVIVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARGLD+  V  V NFD+    + ++HR+GRTGRAG+ G A +LVA  D   + +IE+
Sbjct: 300 DLAARGLDVEGVDLVVNFDIAQSGDEHVHRVGRTGRAGQSGLAVSLVAAHDYNLMSSIER 359

Query: 363 LIE-----KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            +      +++D L                  H   + +    +K     R+++  +  K
Sbjct: 360 YLGIRFEPREIDSLKAKYKGPAKVKSSGKAVGHKKKKADTTTSRKKASKVRKRQTKNIGK 419

Query: 418 SHIPLKESEKIS 429
              P   S+ I 
Sbjct: 420 RRAPAATSQPIE 431


>gi|320163352|gb|EFW40251.1| DEAD box ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC
           30864]
          Length = 1073

 Score =  153 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 134/456 (29%), Positives = 222/456 (48%), Gaps = 15/456 (3%)

Query: 2   DFADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +++  G++   +  + D   + KPTPIQ + +P V+   D+  IA+TG+GKT +FVLPM+
Sbjct: 370 NWSQCGVNALTLKILTDKCKFEKPTPIQAQAVPAVMSGRDLIAIAKTGSGKTLAFVLPMI 429

Query: 61  TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +  +   +    P  LIL PTRELA Q     +++     L    L GG     Q   
Sbjct: 430 RHILAQPPLSADDGPIGLILTPTRELAVQTYTECKRFAAPNQLRTVCLYGGSAITEQIAD 489

Query: 119 LERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           L+RGA++++CTPGR++D     +     +  +  LV+DEADRM DMGF P +  I + + 
Sbjct: 490 LKRGAEIIVCTPGRMIDMLTANSGRVTNLRRVTYLVLDEADRMFDMGFEPQVMRIVNNIR 549

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT+LFSAT    ++ ++   L +     +    S         V    +  K   L 
Sbjct: 550 PARQTVLFSATFPRSMETLAYKILHHSPLQIIVGGRSIVSKEIDQHVLVIPEAEKYLRL- 608

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +LL       + I+F  +++    L  SL   G+   ++H  +DQ  R + L  FK G 
Sbjct: 609 LELLGVWQEEGSVIVFVERQEAADMLLKSLYASGYPCLSLHAGLDQGDREETLIAFKAGD 668

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++L++A+ +AARGLD+ ++  V N+D PN  E+Y+HR+GRTGRAGR G ++T +  E  +
Sbjct: 669 VRLLIATSVAARGLDVKELKLVVNYDAPNHYEDYVHRVGRTGRAGRKGTSYTFLTPEQGR 728

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
               I   ++     +  +L  L    E    +      K +    K  GF   + N ++
Sbjct: 729 FAGDILNALQLSGANVPEELKQLKEQYEADVKSGKAKGGKFSVRKGKGFGFTDEENNKAN 788

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
                     + + K    + E+D +  G   + P+
Sbjct: 789 AL--------KNMQKAAMGLGESDDEDSGPSASTPS 816


>gi|58040739|ref|YP_192703.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58003153|gb|AAW62047.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 393

 Score =  153 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 125/366 (34%), Positives = 188/366 (51%), Gaps = 4/366 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL   ++  +  AG+ +P+ IQ + IP +L+  DV   +QTG+GKTA+FVLPML  
Sbjct: 22  FEELGLIAPLLATLAQAGHKRPSLIQTQAIPPLLEGKDVLVGSQTGSGKTAAFVLPMLQK 81

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +       PR LILEPTRELAAQ A    + G+  +L   ++ GG   E Q + +  G
Sbjct: 82  LTEAGP-APGPRALILEPTRELAAQTAAVCRQLGRRLSLKTRVICGGTSREQQVQSVSDG 140

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ T GR+LD   +  L++ ++  LV+DEADR+LD  F   +  +T   P      +
Sbjct: 141 VDIIVATHGRLLDLVMQADLVLEHLTYLVLDEADRLLDEDFSASMTALTPYFPDQPPQTV 200

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           F    +  L +   +  +   R  V    +                 K           +
Sbjct: 201 FC---SATLPEPVMDLAKRVTRNPVRVEIAAESFTPKNIRQRAIFVEKDDKPETVARLLK 257

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F   K  V  L  +L +    V  +HG+  Q +R K L  F++G I ++V +
Sbjct: 258 HFEGRSIVFARTKNTVDALAKTLRRHNLRVETLHGDRTQGARNKALDLFRQGRIPVLVTT 317

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDIPDV  V N D+P   E Y+HRIGRT RAGR G AF+L+  ++   +  +EK
Sbjct: 318 DIASRGLDIPDVDLVINMDMPETPEAYVHRIGRTARAGRKGVAFSLINIDERTFLRDVEK 377

Query: 363 LIEKKV 368
            I  +V
Sbjct: 378 HIGYRV 383


>gi|227538389|ref|ZP_03968438.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241771|gb|EEI91786.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 603

 Score =  153 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 139/375 (37%), Positives = 229/375 (61%), Gaps = 9/375 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHD-VCGIAQTGTGKTASFVLP 58
           M+ F +LG+  +VV A+ + G+ KP+PIQ K IP++L  +D   G+AQTGTGKTA+F LP
Sbjct: 1   MNPFLELGIRHEVVNAISELGFEKPSPIQEKAIPVLLTGNDDFVGLAQTGTGKTAAFGLP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNK 117
           +L  L+  +   + P+ L+L PTREL  Q+A + EK+ K  +    + + G      Q +
Sbjct: 61  LLEQLDFSQ---KHPQALVLCPTRELCLQIAKDLEKFAKYIDDVHVVAVYGGANISDQLR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           ++ RG  +++ TPGR+LD   R  +  +N++ +V+DEAD ML+MGF   I NI S  P  
Sbjct: 118 QIRRGVQIVVATPGRMLDIIGRNAIDFSNVKYVVLDEADEMLNMGFQEDINNILSETPEE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           ++T LFSATM  E++++++N++ +P  + V T ++    IEH     Y   +K      +
Sbjct: 178 KKTWLFSATMPREVRRIAQNYMTDPVELTVGTKNTGNANIEH---HYYLIRAKDKYAAFK 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +    GI+FC  K     +  +L K G++  ++HG++ Q+ R K++  +++ ++Q
Sbjct: 235 RIVDSNPEIFGIVFCRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRDRSLQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L++A+D+AARG+D+ DV HV NF +P+  ENY HR GRT RAG+ G + +LV  +++  I
Sbjct: 295 LLIATDVAARGIDVNDVTHVINFSLPDEVENYTHRSGRTARAGKTGISLSLVNVKELSKI 354

Query: 358 DAIEKLIEKKVDWLN 372
             IEK+I K  +   
Sbjct: 355 RHIEKIIGKPFERKQ 369


>gi|169609619|ref|XP_001798228.1| hypothetical protein SNOG_07902 [Phaeosphaeria nodorum SN15]
 gi|143462316|sp|Q0UK12|RRP3_PHANO RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|160701880|gb|EAT84178.2| hypothetical protein SNOG_07902 [Phaeosphaeria nodorum SN15]
          Length = 546

 Score =  153 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 129/400 (32%), Positives = 207/400 (51%), Gaps = 7/400 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+  ++  A  + GY   TPIQ ++IPL L   D+ G+A+TG+GKTA+FVLP+L 
Sbjct: 116 TFADLGVREELCDACENLGYKTATPIQTESIPLALAGKDIIGLAETGSGKTAAFVLPILQ 175

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    LI+ PTRELA Q++   +  G   N+  A L+GG+    Q   L +
Sbjct: 176 ALLD---KPQAYFGLIMAPTRELAYQISQQVDALGSIINVKCATLVGGMDMVPQAIALSK 232

Query: 122 GADVLICTPGRI-LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ +PGR+     N     + +++ LV+DEADR+LD+ F   +  I  ++P   + 
Sbjct: 233 RPHIIVASPGRLLDHLENTKGFSLKHLKYLVLDEADRLLDLDFGDSLDKIFKVLPRDDRH 292

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSATM+ +++ +    L+NP R+ +++ S    +             K        L
Sbjct: 293 TYLFSATMSSKVESLQRAALKNPVRVSISSSSHQVVSTLLQSYMLIPHKYKDLY--LIHL 350

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +     I+F         L   L   GF    +HG + Q +R+  L+ FK     ++
Sbjct: 351 LNDNIGHATILFTRTVNETQRLAVLLRTLGFQALPLHGQLSQSNRLGALNKFKAKARDIL 410

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP V  V NFD+P+ +E Y+HR+GRT RAG+ GKA + V + D++    
Sbjct: 411 VATDVAARGLDIPSVDLVVNFDLPHDSETYVHRVGRTARAGKSGKAVSFVTQYDLEIFQR 470

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           IE  + K+V         +    E++  AQ    R+   +
Sbjct: 471 IEHALGKQVPEEKVSRDEVMVYAERVGEAQRVAVREMKDL 510


>gi|148557617|ref|YP_001265199.1| DEAD/DEAH box helicase domain-containing protein [Sphingomonas
           wittichii RW1]
 gi|148502807|gb|ABQ71061.1| DEAD/DEAH box helicase domain protein [Sphingomonas wittichii RW1]
          Length = 453

 Score =  153 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 168/449 (37%), Positives = 248/449 (55%), Gaps = 16/449 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++LGL   +  A+   GY  PTPIQ + IP +L+  D+CGIAQTGTGKTA+F LP L 
Sbjct: 17  KFSELGLIEPIQRALAAKGYDIPTPIQAQAIPPLLEGRDLCGIAQTGTGKTAAFALPSLH 76

Query: 62  ILEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L         +  R L+L PTRELA+Q+A++F +YGK   L+VA + GG+P   Q ++L
Sbjct: 77  HLHDNLKHTPPQGCRMLVLAPTRELASQIAESFVQYGKFLRLSVATVFGGVPINKQIRQL 136

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG D+L+ TPGR+LD  ++  L +  +EI V+DEAD+MLD+GFI  ++ +  L+P  RQ
Sbjct: 137 QRGVDILVATPGRLLDLIDQRALSLKFVEIFVLDEADQMLDLGFIHALKRVDQLLPKKRQ 196

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +L FSATM   + ++ + FL NP ++ V   S+TAE +E        Q  +       + 
Sbjct: 197 SLFFSATMPKAIAELGDRFLTNPAKVSVAPQSTTAERVEQFATFCNPQEKQAL---LTMR 253

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              + +   ++F   K     +  +L   G +  AIHGN  Q  R + L  F+ G ++++
Sbjct: 254 IRSEPIDRALVFTRTKHGADRVVKNLRAAGIAAEAIHGNKSQPQRERALGLFRTGEVKIL 313

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HVFNF++PN AE Y+HRIGRT RAG  G A   VA ++  ++ A
Sbjct: 314 VATDIAARGIDVGGVSHVFNFELPNVAEQYVHRIGRTARAGAAGIAIAFVADDERPYLKA 373

Query: 360 IEKLIEKK--VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           IEKL + K  +  L  +  +    L K   +Q        P PQ     +RR    +  +
Sbjct: 374 IEKLTKVKLDIQPLPDNFVAEKAKLPKPAPSQ--------PQPQGHGDRNRRHDGGAGDR 425

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFR 446
           +  P K      K       N     G R
Sbjct: 426 NG-PAKRRFSRPKGAPGAHRNAVKKFGAR 453


>gi|238484285|ref|XP_002373381.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus flavus
           NRRL3357]
 gi|317140428|ref|XP_001818181.2| ATP-dependent RNA helicase drs1 [Aspergillus oryzae RIB40]
 gi|91206589|sp|Q2UQI6|DRS1_ASPOR RecName: Full=ATP-dependent RNA helicase drs1
 gi|220701431|gb|EED57769.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus flavus
           NRRL3357]
          Length = 820

 Score =  153 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 148/449 (32%), Positives = 229/449 (51%), Gaps = 25/449 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  LS  ++  +    +  PTPIQ KTIP+ L   D+ G A TG+GKTA+FV+P+L 
Sbjct: 303 SFQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILE 362

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++
Sbjct: 363 RLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKK 422

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 423 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 482

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTD + K+    L  P R+ V++  +T+  +   FV        K       L 
Sbjct: 483 MLFSATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLIQEFVRLRPGREDKRLGYLLHLC 542

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      I+F  QKK    +  +    G     +HG++ Q  R++ + NF+EG +  ++
Sbjct: 543 KEVYTGRVIVFFRQKKEAHRVRIAFGLLGLKAAELHGSMSQEQRIRSVENFREGKVSFLL 602

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + A 
Sbjct: 603 ATDLAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAA 662

Query: 361 EKLIE--------------------KKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNN 397
            K  +                    +K   L  +++++       +++  A+    R  N
Sbjct: 663 VKASKAQGAKVASRVVDPAVADRWAQKAKDLEEEINAVLEEEKIEKQLAQAEMQVTRSEN 722

Query: 398 PIPQKSTGFDRRKKN-YSSQKSHIPLKES 425
            I  ++    R K+  ++S++  I  K++
Sbjct: 723 MIKHEAEIMSRPKRTWFASEREKILSKKA 751


>gi|83766036|dbj|BAE56179.1| unnamed protein product [Aspergillus oryzae]
          Length = 856

 Score =  153 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 148/449 (32%), Positives = 229/449 (51%), Gaps = 25/449 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  LS  ++  +    +  PTPIQ KTIP+ L   D+ G A TG+GKTA+FV+P+L 
Sbjct: 339 SFQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILE 398

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++
Sbjct: 399 RLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKK 458

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 459 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 518

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTD + K+    L  P R+ V++  +T+  +   FV        K       L 
Sbjct: 519 MLFSATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLIQEFVRLRPGREDKRLGYLLHLC 578

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      I+F  QKK    +  +    G     +HG++ Q  R++ + NF+EG +  ++
Sbjct: 579 KEVYTGRVIVFFRQKKEAHRVRIAFGLLGLKAAELHGSMSQEQRIRSVENFREGKVSFLL 638

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + A 
Sbjct: 639 ATDLAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAA 698

Query: 361 EKLIE--------------------KKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNN 397
            K  +                    +K   L  +++++       +++  A+    R  N
Sbjct: 699 VKASKAQGAKVASRVVDPAVADRWAQKAKDLEEEINAVLEEEKIEKQLAQAEMQVTRSEN 758

Query: 398 PIPQKSTGFDRRKKN-YSSQKSHIPLKES 425
            I  ++    R K+  ++S++  I  K++
Sbjct: 759 MIKHEAEIMSRPKRTWFASEREKILSKKA 787


>gi|326478704|gb|EGE02714.1| ATP-dependent RNA helicase DHH1 [Trichophyton equinum CBS 127.97]
          Length = 441

 Score =  153 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 114/357 (31%), Positives = 178/357 (49%), Gaps = 7/357 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F D  +   ++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 47  LEFEDFYIKRDLMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                   ++   + LIL PTRELA Q +   +  GK+  + V +  GG   +    +L 
Sbjct: 107 ERT---NPKIAKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLN 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD  ++G   ++     V+DEAD++L   F P I+ + +  P  RQ 
Sbjct: 164 DTVHIIVGTPGRILDLASKGVADLSECTTFVMDEADKLLSPEFTPVIEQLLTFHPKDRQV 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F     R           T+            ++       L 
Sbjct: 224 MLFSATFPIIVKT----FKDKHMRNPYEINLMDELTLRGITQYYAFVEERQKVHCLNTLF 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q +R ++  +F+ G  + +V
Sbjct: 280 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRYNL 396


>gi|169837346|ref|ZP_02870534.1| ATP-dependent RNA helicase [candidate division TM7 single-cell
           isolate TM7a]
          Length = 477

 Score =  153 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 129/387 (33%), Positives = 209/387 (54%), Gaps = 10/387 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F D GLS +++ A+   G+ +P+ IQ   IP +L+    + G AQTGTGKTA+F +P+L
Sbjct: 3   KFEDFGLSIEMLNALSKKGFEEPSEIQKLVIPELLKERTHLIGQAQTGTGKTAAFGIPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +E  +      R LIL PTRELA QVAD         +L V  + GG   E Q KKL+
Sbjct: 63  ETIEADKT----VRALILAPTRELANQVADEIYSLKGEKDLKVLAVYGGASIENQIKKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+++ TPGR++D   +  L ++ ++  V+DEAD ML+MGF+  I+ I       ++ 
Sbjct: 119 SGVDIVVGTPGRVMDLMRKKILKVDKLDYFVLDEADEMLNMGFLEDIEAILEKTNDEKKM 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+   +  +++ F+   K ++V     T    E  +     +   +        +
Sbjct: 179 LFFSATIPKAIMAIAKKFMPEHKLLKVAKKELTTNLTEQIYYEVKQEDKFEALCRVLDYE 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  GI+FC  K  V ++ + L+ + +    IHG+I Q  R K L  FK+  + ++V
Sbjct: 239 QDFY---GIVFCRTKSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKKILTILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HV N+ +P  AE+Y+HRIGRTGRAG+ G A T V   +   +  I
Sbjct: 296 ATDVAARGIDVSNLTHVINYSIPQEAESYVHRIGRTGRAGQKGVAITFVTPREASKLAQI 355

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKI 385
           +++ + ++  + +      L    E +
Sbjct: 356 KRITKTEIKREHIPNVEEILEAKKEAL 382


>gi|260459532|ref|ZP_05807787.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259035086|gb|EEW36342.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 477

 Score =  153 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 167/463 (36%), Positives = 258/463 (55%), Gaps = 25/463 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++ A  +AG+ +P PIQ++ IP  L+  D+ GIAQTG+GKTA+F LP+L+ 
Sbjct: 22  FAALGVTGALLKATHNAGFTEPKPIQMQAIPPQLEGRDIFGIAQTGSGKTAAFALPILSK 81

Query: 63  LEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+ D  +   K  +++ AL++GG+   +Q KK+ 
Sbjct: 82  IIALGTKRRAKTTRALILAPTRELAVQIEDTIKILAKGAHVSTALVLGGVSRFSQVKKVA 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+LI TPGR+ D    G L++++ + LV+DE DRMLDMGFI  ++ I       RQT
Sbjct: 142 PGVDILIATPGRLTDLVREGDLILSDTKWLVLDEGDRMLDMGFINDVKRIAKATAPDRQT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM DE+ ++++  L+NP RIEV+  S+ A  I           +K+   +   + 
Sbjct: 202 ALFSATMPDEIAELAKGLLKNPVRIEVSPQSTAAAEIVQ---GVVFARTKQKRQVLSTML 258

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   MK+ IIF   K     +   LE+ GF    IHGN  Q +R K L++F++G+++++V
Sbjct: 259 ADAAMKSVIIFSRTKHGADRVTKDLERDGFKAAVIHGNKSQNARQKALNDFRDGSVRILV 318

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+P + HV NFD+P+ AE+Y+HRIGRTGR G  G A TL    +   +  +
Sbjct: 319 ATDIAARGIDVPGISHVVNFDLPDEAESYVHRIGRTGRNGMDGIAITLCDPSENSKLRQV 378

Query: 361 EKLIEKKVDWLNGDLSSLNP---PLEKID---------IAQHNHARKNNPIPQKSTGFDR 408
           E++I  K+  +   L S +P   P EK +                 +      K  GF  
Sbjct: 379 ERIIRTKLPIVADHLGSPDPQRNPAEKNERFEPANDRNDRNGRRDGRRPGGENKGNGFG- 437

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
            KK +  + +    ++ E     + + +        F G  PA
Sbjct: 438 -KKRFGDKPAFAGERKPEGAKPFKGNNKRR------FGGKRPA 473


>gi|56090019|gb|AAV70960.1| Vasa [Carassius gibelio]
          Length = 701

 Score =  153 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 141/431 (32%), Positives = 221/431 (51%), Gaps = 31/431 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + G    +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 264 MTFDEAGPCESLRKNVTKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 323

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + V+ P  +I+ PTREL  Q+     K+     +   ++ GGI    
Sbjct: 324 QRLMADGVAASKFSEVQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGY 383

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
             +++ +G ++L  TPGR+LD   RGK+ ++ +  LV+DEADRMLDMGF P ++      
Sbjct: 384 TIREVLKGCNILCGTPGRLLDIIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRKLVGSP 443

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++Q+++ +FL+             A +     +    QYSK
Sbjct: 444 GMPSKEDRQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIIQVDQYSK 503

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +       L      +  ++F   K++   +   L ++  S  +IHG+ +QR R K LS+
Sbjct: 504 RD--QLLDLLRSTGTERTMVFVETKRSADFIATFLCQEKLSTTSIHGDREQREREKALSD 561

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI  V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 562 FRTGQCPVLVATSVAARGLDIEQVQHVVNFDLPSSIDEYVHRIGRTGRCGNIGRAVSFFN 621

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            E D     ++       V  L+G    +   LE+I  + H            +TGF+ R
Sbjct: 622 PESDTPLARSL-------VKVLSGAQQEVPKWLEEIAFSAH-----------GTTGFNPR 663

Query: 410 KKNYSSQKSHI 420
            K ++S  +  
Sbjct: 664 GKVFASTDTRK 674


>gi|321476533|gb|EFX87493.1| hypothetical protein DAPPUDRAFT_306483 [Daphnia pulex]
          Length = 805

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 204/379 (53%), Gaps = 4/379 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA      K++  +  + +  PTPIQ + IP  L   DV GIAQTG+GKTA+F+ PM+ 
Sbjct: 301 SFAHFNFDEKLMNVIRKSEFTNPTPIQSQAIPAALSGRDVIGIAQTGSGKTAAFLWPMIV 360

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P  LIL PTREL+ Q+    +K+ K + ++V    GG     Q+K L
Sbjct: 361 HILDQPDLKPGDGPIGLILAPTRELSQQIYTEAKKFCKVFGISVVCCYGGGSKWEQSKDL 420

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+GA++++ TPGR++D        +  +  LV+DEADRM DMGF P +++I +     RQ
Sbjct: 421 EQGAEIVVATPGRMIDLVKIKATNLQRVTFLVLDEADRMFDMGFEPQVRSICNHARPERQ 480

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    ++K++ + L +P RI         + +               + L   L
Sbjct: 481 TLLFSATFKKRIEKLARDVLSDPIRIVQGDVGEANQDVTQVIEVIAPTAK--YSWLITRL 538

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + +IF  +K N   L  SL+ +  SV  +HG++DQ  R +++S+FK+  + ++
Sbjct: 539 VEFMASGSVLIFVTKKANAEELSASLKSRELSVALLHGDMDQVDRNQVISSFKKKEMDIL 598

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+D+    + + HRIGRTGRAG  G A+TLV   D +    
Sbjct: 599 VATDVAARGLDIPHIRTVVNYDIARDIDTHTHRIGRTGRAGEKGTAYTLVTPADKEFAGH 658

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++  L  L
Sbjct: 659 LVRNLEGASQVVSEPLMDL 677


>gi|224129414|ref|XP_002328711.1| predicted protein [Populus trichocarpa]
 gi|222839009|gb|EEE77360.1| predicted protein [Populus trichocarpa]
          Length = 587

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 129/397 (32%), Positives = 209/397 (52%), Gaps = 16/397 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+     ++  +   G V+PTPIQ++ +P++L   D+ GIA TG+GKT  FVLP++ I
Sbjct: 144 FKDMRFPEPILKMLKAKGIVQPTPIQVQGLPVILTGRDMIGIAFTGSGKTLVFVLPLIMI 203

Query: 63  -----LEKGRARVRMPRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGIP 111
                +         P  LI+ P+RELA Q  +  E++           L   L IGG+ 
Sbjct: 204 ALQEEIMMPIMPGEGPVGLIVCPSRELARQTYEVVEEFLIPMRAAGYPELRPLLCIGGVD 263

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
             +Q + +++G  +++ TPGR+ D   + K+ ++N   L +DEADR++D+GF   I+ + 
Sbjct: 264 MRSQLEVVKKGVHIVVATPGRLKDMLAKKKMSLDNCRYLTLDEADRLVDLGFEDDIREVF 323

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTLLFSATM  ++Q     F ++     V      A       +       ++
Sbjct: 324 DHFKAQRQTLLFSATMPTKIQN----FARSALVKPVTVNVGRAGAANLDVIQEVEYVKQE 379

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             ++  L   Q T    ++FC  K +V ++   L  +G    A+HG  DQ  R   +S+F
Sbjct: 380 AKIVYLLECLQKTPPPVLVFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSF 439

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + K
Sbjct: 440 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 499

Query: 352 EDIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
              +  +  ++ L+++    +   L+ LN P+E  D 
Sbjct: 500 NQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDGDT 536


>gi|2655202|gb|AAB87902.1| U5 snRNP 100 kD protein [Homo sapiens]
          Length = 820

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 141/434 (32%), Positives = 209/434 (48%), Gaps = 35/434 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q
Sbjct: 452 WITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 511

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 512 GFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMP 571

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            + Q          E    +    ++  R  V   ++                       
Sbjct: 572 VSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 631

Query: 215 --ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             +  E      +     +       +  Q      IIF NQKK    L  SLEK G++ 
Sbjct: 632 AGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNA 691

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHR
Sbjct: 692 CTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHR 751

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     AQH  
Sbjct: 752 IGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHKP 805

Query: 393 ARKNNPIPQKSTGF 406
                   ++ T F
Sbjct: 806 GTILTKKRREETIF 819


>gi|164687290|ref|ZP_02211318.1| hypothetical protein CLOBAR_00931 [Clostridium bartlettii DSM
           16795]
 gi|164603714|gb|EDQ97179.1| hypothetical protein CLOBAR_00931 [Clostridium bartlettii DSM
           16795]
          Length = 480

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 119/373 (31%), Positives = 221/373 (59%), Gaps = 5/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  L  +++ ++    Y  P+ +Q + IP++L + D+   ++TGTGK+A+F +P+  
Sbjct: 3   SFNNFNLDTEILKSLDILDYKIPSQVQSRVIPVLLDKKDILVKSKTGTGKSAAFAIPICN 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++K   ++++   L++ PTRELA QV +  EK G+   +  ++++G  P + Q  +L++
Sbjct: 63  KIKKLENKLKV---LVIVPTRELALQVKEEIEKIGRLKMIKCSVILGKEPLKNQILELKQ 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G +V++ TPGR++DH +RG + +++++  +IDE D+M   GF   I  I   +P T    
Sbjct: 120 GTNVIVATPGRMIDHISRGSVDLDDLDYFIIDEVDKMFTKGFETDINTIMKNIPNTSCKA 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT+ ++L+++   ++++ + IEV+        IE  ++    Q  K  A   + +  
Sbjct: 180 FFSATVDNDLKEICNGYMKDYEYIEVDEEEILKNQIEEKYIKVEKQELKYDA--LKNVLY 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  IIF N KK    L  +++ +GF V  IHG+I Q  R  I+ +FK+    ++++
Sbjct: 238 KFKPETTIIFTNTKKQAEVLYENMKSEGFLVEQIHGDISQERRFYIIDSFKKHEFNILIS 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+ +RG+ I DV  V N+D+P+ +E Y+HRIGRTGRAG+HGKA +LV+  + +  + IE
Sbjct: 298 SDIISRGIHIDDVSLVINYDIPSDSEIYVHRIGRTGRAGKHGKAISLVSNNECRDFENIE 357

Query: 362 KLIEKKVDWLNGD 374
              + K++ +  +
Sbjct: 358 VYTKNKIEPIGIE 370


>gi|109096393|ref|XP_001104339.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like isoform 5
           [Macaca mulatta]
          Length = 820

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 141/434 (32%), Positives = 209/434 (48%), Gaps = 35/434 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q
Sbjct: 452 WITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 511

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 512 GFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMP 571

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            + Q          E    +    ++  R  V   ++                       
Sbjct: 572 VSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 631

Query: 215 --ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             +  E      +     +       +  Q      IIF NQKK    L  SLEK G++ 
Sbjct: 632 AGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNA 691

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHR
Sbjct: 692 CTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHR 751

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     AQH  
Sbjct: 752 IGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHKP 805

Query: 393 ARKNNPIPQKSTGF 406
                   ++ T F
Sbjct: 806 GTILTKKRREETIF 819


>gi|124430514|ref|NP_001074450.1| probable ATP-dependent RNA helicase DDX23 [Mus musculus]
 gi|148672229|gb|EDL04176.1| mCG18410, isoform CRA_a [Mus musculus]
          Length = 819

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 141/434 (32%), Positives = 209/434 (48%), Gaps = 35/434 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 391 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 450

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q
Sbjct: 451 WITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 510

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 511 GFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMP 570

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            + Q          E    +    ++  R  V   ++                       
Sbjct: 571 VSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 630

Query: 215 --ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             +  E      +     +       +  Q      IIF NQKK    L  SLEK G++ 
Sbjct: 631 AGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNA 690

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHR
Sbjct: 691 CTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHR 750

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     AQH  
Sbjct: 751 IGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHKP 804

Query: 393 ARKNNPIPQKSTGF 406
                   ++ T F
Sbjct: 805 GTILTKKRREETIF 818


>gi|312219551|emb|CBX99494.1| similar to ATP-dependent RNA helicase DRS1 [Leptosphaeria maculans]
          Length = 811

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 127/359 (35%), Positives = 195/359 (54%), Gaps = 1/359 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++  +   G+ +PTPIQ K IP+ +Q  DV G A+TG+GKTA+F++P+L 
Sbjct: 281 SFQAMSLSRPILRGLAAVGFSEPTPIQNKAIPIAMQGKDVVGGAETGSGKTAAFLIPILE 340

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  I  PTRELA Q  +   K     ++T AL+ GG   + Q   L+ 
Sbjct: 341 RLLYRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSTKDQEAVLKT 400

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH +      + ++EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 401 RPDVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFESQLNEILTTIPKSRQT 460

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT  + ++    +  P R+ V+    T + +   F+        +       + 
Sbjct: 461 MLFSATMTSTVDRLIRIGMDKPVRLMVDAKKHTVKGLTQEFIRLRQGKEDRRLAYLMYIC 520

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  IIF  QKK    +       G     +HGN+ Q  R++ +  F+ G    ++
Sbjct: 521 EKFYNERVIIFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQAVEAFRSGKSAYLL 580

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           A+D+A+RGLDI +V  V N++ P   + Y+HR+GRT RAGR G+A TL A+ D K +  
Sbjct: 581 ATDVASRGLDIKNVSTVINYEAPQTHDIYMHRVGRTARAGREGRACTLAAEPDRKVVKQ 639


>gi|304392205|ref|ZP_07374147.1| ATP-dependent RNA helicase RhlE [Ahrensia sp. R2A130]
 gi|303296434|gb|EFL90792.1| ATP-dependent RNA helicase RhlE [Ahrensia sp. R2A130]
          Length = 536

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 166/466 (35%), Positives = 248/466 (53%), Gaps = 9/466 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGLS +VV  +   G   PTPIQ   IPLVL+  DV G+AQTGTGKTA+F LP++  
Sbjct: 36  FSALGLSKRVVRPLAVLGLKDPTPIQTNAIPLVLEGRDVMGLAQTGTGKTAAFGLPLIDR 95

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L     +V+    R LIL PTREL  Q+ADN   Y K   + V+ ++GG     Q + L 
Sbjct: 96  LLSDGDKVQPRSVRALILAPTRELVNQIADNLRAYVKKTPVWVSSVVGGQNINTQIRHLA 155

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVL+ TPGR+LD  +R  + ++  + LV+DEAD+MLDMGFI  ++ I  L+   RQT
Sbjct: 156 KGTDVLVATPGRLLDLVDRKAVKLDTAKYLVLDEADQMLDMGFIHALRRIEPLLGRPRQT 215

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   ++++S+++L NP+RIEV       +  +    + +   +K    L   L 
Sbjct: 216 LLFSATMPKLVEELSKSYLTNPERIEVARAG---KAADKVRQSVHYIATKDKLNLLSKLL 272

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      ++F   K     L   L  QGF+  +IHGN  Q  R + L  FK G ++++V
Sbjct: 273 AERPDDLSLVFGRTKHGCEKLMKQLVAQGFAAASIHGNKSQGQRDRALREFKSGAVRILV 332

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DIP V HV+NF++P   ENY+HRIGRT RAGR G+A    A ++ K +  I
Sbjct: 333 ATDVAARGIDIPAVSHVYNFNLPEVPENYVHRIGRTARAGRDGEAVAFCAPDERKMLRDI 392

Query: 361 EKLIEKKVDWL--NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           ++L+   ++ +  +G ++S  P                      S    +R+ N      
Sbjct: 393 QRLMNFDIEVVGDDGSMNSSEPDAPTKAQRGGRGGGGGGGHRGASGAPKKRRGNARPAGG 452

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
                +       ++  Q       G  G+  A   P++ G    +
Sbjct: 453 EGTGSKPPSKKHPRRAAQNRGEGGRGEGGD--AVAAPRSEGGRPKR 496


>gi|301169611|emb|CBW29212.1| ATP-dependent RNA helicase [Haemophilus influenzae 10810]
          Length = 415

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 127/379 (33%), Positives = 195/379 (51%), Gaps = 4/379 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      R PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 71  LLTHQDPNLEYRHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQAI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P  + 
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L    + T   +     F       E        +T        +   ++    L   L
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMND-PEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTL 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F  G + ++
Sbjct: 250 MEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTNGYLDIL 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ A
Sbjct: 310 VATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPA 369

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+ I   +     +  +L
Sbjct: 370 IEEYIGHSIPVSQYETEAL 388


>gi|306821005|ref|ZP_07454624.1| ATP-dependent RNA helicase DbpA [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550946|gb|EFM38918.1| ATP-dependent RNA helicase DbpA [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 387

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 132/387 (34%), Positives = 213/387 (55%), Gaps = 10/387 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DL +  ++V  +       PT IQ + IP++L++ ++   AQTGTGKT +F+LP++T
Sbjct: 3   EFKDLKIKAELVSQLSKLRISTPTQIQEEAIPIILKKRNLIAKAQTGTGKTLAFLLPIMT 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           + ++    +R+P+T+IL PTREL+ Q    F+    +  L+ A ++GG  F+ Q  K   
Sbjct: 63  MTDEN---LRLPQTVILSPTRELSNQTKKVFDDLNVDKKLSCANIVGGHDFKKQENKFVS 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + +++ TPGR+L+H   G + M +I   +IDEAD+ML+ GF+  I  +   +P   Q +
Sbjct: 120 NSQIIVATPGRLLEHIRSGNINMKHISRFIIDEADQMLEYGFLEDIVLLKDKLPDKLQIV 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM   +  +++  ++NP +I+V    +  E IE      +    K      + +  
Sbjct: 180 LLSATMPKPIIDLAKKLMKNPVKIDVTKEKTVTENIEQ---ILFHTTEKFKNDTLKFVLE 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      IIFCN KKN   L   +   G+    IHG+  Q+ R  IL+ F++   Q +V+
Sbjct: 237 EYRPFMSIIFCNSKKNAEKLNEYMSISGYDCDIIHGDFSQKKREHILNEFRKMKFQYLVS 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL+ARG DI  V HV N++VP     YIHRIGRTGRA + G A +L+ ++D K I+ I 
Sbjct: 297 TDLSARGFDIDGVTHVINYEVPTDYNYYIHRIGRTGRAEKTGIAISLIDEKDEKKIEKIS 356

Query: 362 KLIEKKV----DWLNGDLSSLNPPLEK 384
           +    K     D    +  +L   +EK
Sbjct: 357 QRFNIKTKSFYDRGQNERKTLIKKMEK 383


>gi|289548721|ref|YP_003473709.1| DEAD/DEAH box helicase [Thermocrinis albus DSM 14484]
 gi|289182338|gb|ADC89582.1| DEAD/DEAH box helicase domain protein [Thermocrinis albus DSM
           14484]
          Length = 365

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 133/369 (36%), Positives = 206/369 (55%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F+   LS  +  ++ + G+  PTPIQ + IPL L  +D+ G A TGTGKTA+F +P+L
Sbjct: 1   MEFSFSQLSEPLRKSITEMGFQHPTPIQREAIPLALAGYDLLGQAATGTGKTAAFGIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-L 119
                   +  +   LIL PTRELA QV D   +  +   L V    GG       +   
Sbjct: 61  EK----LGKEDLLGALILTPTRELALQVKDQLFQLARYKGLRVFAFYGGTSVAKDIQVLS 116

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI D   RG + +  +   V+DEAD MLDMGFI  I+ I S +P  RQ
Sbjct: 117 TVPPHVVVGTPGRIKDLIGRGYISLEKVRFFVLDEADLMLDMGFIEDIEYIVSHLPNRRQ 176

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T +FSAT+  +++++++ +L+   R+           IE   +   +   K      + +
Sbjct: 177 TFMFSATLPRQVEELAKRYLREHYRVVKVYTPELRPKIEERLIRLSSSAQKLS--ELEKI 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +  ++  I+F   KK+  +L   L ++GF+  A+HG++ QR R   L  F++G ++++
Sbjct: 235 LREHLLEKVIVFVKTKKDAKDLHEVLRRKGFNAVALHGDMTQRQRESALKLFRDGKVKIV 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI  VG V N+ +P   E YIHRIGRTGR G +GKA++ V  ED + +  
Sbjct: 295 VATDVASRGLDIKGVGLVINYHLPEDPEIYIHRIGRTGRIGSYGKAYSFVTPEDSRALWR 354

Query: 360 IEKLIEKKV 368
           I++L EK +
Sbjct: 355 IKRLKEKLI 363


>gi|145636978|ref|ZP_01792642.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
 gi|145269836|gb|EDK09775.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
          Length = 415

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 196/379 (51%), Gaps = 4/379 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +    +   PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 71  LLTHQDPNLKYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQVI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P  + 
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L    + T   +     F       E        +T        +   ++    L   L
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMND-PEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTL 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G + ++
Sbjct: 250 MEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDIL 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ A
Sbjct: 310 VATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPA 369

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+ I   +     +  +L
Sbjct: 370 IEEYIGHSIPVSQYETEAL 388


>gi|114563615|ref|YP_751128.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114334908|gb|ABI72290.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 451

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 125/385 (32%), Positives = 189/385 (49%), Gaps = 6/385 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F D  L  +++ ++   G   PT +Q + +P+ L   D+   ++TG+GKT +F+LP M
Sbjct: 1   MQFTDFSLDKRLLDSLKHLGISTPTDVQAQALPIALSGKDLMASSKTGSGKTLAFLLPAM 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++       + PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRVISTRALSKKDPRVLILLPTRELAQQVYGQLRLLVANTQYKAISVLGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGRI DH  +  L +N +E+LV+DEADRMLD+GF P ++ I       R+
Sbjct: 121 ARDPHFIVATPGRIADHLQQRHLYLNGLELLVLDEADRMLDLGFAPQLKAINDAADHKRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D                 V+   S  E  +         +      + Q +
Sbjct: 181 QTLMFSATLDHNSIGDIATTLLKSPSHVSIGESYTEHKDIEQRIILVDHLDHKQAVLQHI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            SQ+T K  I+F   + +   L   L  QGF+  A+ G++ Q +R +I+  F  G  Q++
Sbjct: 241 LSQETHKQVIVFTATRSDTDRLATLLAAQGFATSALSGDLKQSARNQIMDQFARGQSQIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A + V  +D      
Sbjct: 301 VTTDVASRGLDLINVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAVSFVGPKDWDSFKK 360

Query: 360 IEKLIEKK-----VDWLNGDLSSLN 379
           ++  + K      ++ L    S L 
Sbjct: 361 VQLFLRKNFEPTVIEGLKAKFSGLR 385


>gi|58263430|ref|XP_569125.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108386|ref|XP_777144.1| hypothetical protein CNBB3750 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687070|sp|Q5KME7|PRP5_CRYNE RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|50259829|gb|EAL22497.1| hypothetical protein CNBB3750 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223775|gb|AAW41818.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1072

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 118/387 (30%), Positives = 198/387 (51%), Gaps = 9/387 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           ++   GL    +  +   G+  PT IQ + IP ++   DV GIA+TG+GKT +F+LPM  
Sbjct: 404 NWGAFGLPQGCLDVIKHQGWETPTSIQAQAIPAIMSGRDVIGIAKTGSGKTVAFLLPMLR 463

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               ++  +    P  +++ PTRELA+Q+    + + K  N+  +  +GG         +
Sbjct: 464 HVRDQRPVSGSEGPIAVVMSPTRELASQIYKECQPFLKVLNIRASCCVGGSSISEDIAAM 523

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++GA+V+ICTPGR++D     N     +     +V+DEADRM DMGF P +  I + V  
Sbjct: 524 KKGAEVVICTPGRMIDLLTANNGRVTNVRRTTYIVMDEADRMFDMGFEPQVMKIINNVRP 583

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + Q +LFSAT    ++ ++   L  P  I V   S  A  I+               L  
Sbjct: 584 SAQKVLFSATFPKTMESLARRILVKPLEITVGGRSVVAPEIDQRVEVRDGDTKFTRLLEI 643

Query: 237 QLLQSQDT----MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                ++         +IF +++++  +L   L ++G+   ++HG  +Q  R + + NFK
Sbjct: 644 LGEMGEEHKDEDDFRTLIFVDRQESADDLFRELLQRGYVCASLHGGKEQVDRDEAIKNFK 703

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G + ++VA+ +AARGLD+ ++  V N+D PN  E+Y+HR GRTGRAG  G   T +  E
Sbjct: 704 NGDVPIIVATSVAARGLDVKELKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCITFITPE 763

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLN 379
             +    I + +E    ++  DL  ++
Sbjct: 764 QERFSVDIVRALEASKAFIPDDLKKMS 790


>gi|328849200|gb|EGF98385.1| hypothetical protein MELLADRAFT_22529 [Melampsora larici-populina
           98AG31]
          Length = 815

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 119/433 (27%), Positives = 216/433 (49%), Gaps = 16/433 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M ++  GL    +  +   GY  P+PIQ + +P ++   DV G+A+TG+GKT +F+LPM 
Sbjct: 148 MKWSWFGLHSACLEVIKSLGYQAPSPIQGQAVPAIMSGRDVIGVAKTGSGKTLAFLLPMF 207

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             ++  R    +  P  +I+ PTRELA Q+      + K   L  A   GG P +     
Sbjct: 208 RHIKDQRPLEALEGPIAMIMTPTRELATQIYKEGRPFLKALGLRAACAYGGSPLKDNIAD 267

Query: 119 LERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           ++RGA+V++CTPGR+++     +   + M  +  LV+DEADRM DMGF P +  I + + 
Sbjct: 268 MKRGAEVIVCTPGRMIELLTTNSGRVINMRRVTYLVLDEADRMFDMGFEPQVMKIVNQIR 327

Query: 176 FTRQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
             RQT+LFSAT   +++    +   +  +          +E  +   V   +    +   
Sbjct: 328 PDRQTVLFSATFPKQMEALARKILRRPLEITVGGRSVVASEIEQIVEVRDDSTKFNRLLE 387

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +     ++D+    ++F +++++  NL   L K+G+   ++HG  +Q  R +++++FK G
Sbjct: 388 ILGRFYNEDSESRSLVFVDRQESADNLFRDLLKKGYPCLSLHGGKEQVDRDQVIADFKAG 447

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G   T ++ +  
Sbjct: 448 VTPIVIATSVAARGLDVKQLKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCITFISPDQE 507

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPP-LEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           ++   + + +         +L +++   LEK+         K        +GF  +  + 
Sbjct: 508 RYAIDLLRALVASGAKYPEELKTMSDAFLEKV---------KTGKAQASGSGFGGKGLDR 558

Query: 414 SSQKSHIPLKESE 426
             +      +   
Sbjct: 559 LEKDRDAKSRAER 571


>gi|167540072|ref|XP_001741531.1| ATP-dependent RNA helicase has1 [Entamoeba dispar SAW760]
 gi|165893947|gb|EDR22062.1| ATP-dependent RNA helicase has1, putative [Entamoeba dispar SAW760]
          Length = 518

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 124/389 (31%), Positives = 208/389 (53%), Gaps = 5/389 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +++  L LS ++  A+ +AGY K T IQ ++IPL+L   D+   A+TG+GKT +F++P++
Sbjct: 57  IEYKSLNLSEEIQKALEEAGYTKMTTIQARSIPLLLMGKDIMAKARTGSGKTLAFLIPIV 116

Query: 61  TILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            IL K   + R     +I+ PTRELA Q  +  EK   +   T  L+IGG   + + + L
Sbjct: 117 EILNKIHFQTRNGTGAIIISPTRELAIQTFEVLEKILAHSERTRTLIIGGSSKKKEEEAL 176

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNI-EILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++GA +++ TPGR+LDH    K  +    + LVIDEADR++++GF   ++ I + +P  R
Sbjct: 177 KKGASIVVATPGRLLDHIINTKCFIYRNLKCLVIDEADRIMEVGFEEEMRQILNRLPKNR 236

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT ++++     N       +      ST  T            +K    L   
Sbjct: 237 QTMLFSATQSEKV-DDIANISLKQPVVINVESQSTISTSSKLEQGYVLVEAKDRFRLLYT 295

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +  K V      L      V A+HG +DQ  R K+   F +    +
Sbjct: 296 FLRKNKNKKTIVFMSSCKAVKFYSDLLNYIDIPVKALHGQLDQDKRTKVFFEFCKAKEAI 355

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +D+AARGLDIP V  +   D+P+  ++YIHR+GRT RA   G+A   V   +++ ++
Sbjct: 356 LITTDIAARGLDIPAVDWIIQVDLPDSPKDYIHRVGRTARADTKGRALLFVQPCEVRILE 415

Query: 359 AI--EKLIEKKVDWLNGDLSSLNPPLEKI 385
            +  EK+   + +     ++++   LEK+
Sbjct: 416 YLKGEKIPLTQYEVPEKKIANIQRELEKL 444


>gi|114644988|ref|XP_509035.2| PREDICTED: probable ATP-dependent RNA helicase DDX23 isoform 2 [Pan
           troglodytes]
          Length = 820

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 141/434 (32%), Positives = 209/434 (48%), Gaps = 35/434 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q
Sbjct: 452 WITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 511

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 512 GFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMP 571

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            + Q          E    +    ++  R  V   ++                       
Sbjct: 572 VSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 631

Query: 215 --ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             +  E      +     +       +  Q      IIF NQKK    L  SLEK G++ 
Sbjct: 632 AGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNA 691

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHR
Sbjct: 692 CTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHR 751

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     AQH  
Sbjct: 752 IGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHKP 805

Query: 393 ARKNNPIPQKSTGF 406
                   ++ T F
Sbjct: 806 GTILTKKRREETIF 819


>gi|261337192|ref|NP_001100263.2| probable ATP-dependent RNA helicase DDX23 [Rattus norvegicus]
 gi|149032134|gb|EDL87046.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 (predicted), isoform
           CRA_b [Rattus norvegicus]
          Length = 819

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 141/434 (32%), Positives = 209/434 (48%), Gaps = 35/434 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 391 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 450

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q
Sbjct: 451 WITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 510

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 511 GFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMP 570

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            + Q          E    +    ++  R  V   ++                       
Sbjct: 571 VSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 630

Query: 215 --ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             +  E      +     +       +  Q      IIF NQKK    L  SLEK G++ 
Sbjct: 631 AGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNA 690

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHR
Sbjct: 691 CTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHR 750

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     AQH  
Sbjct: 751 IGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHKP 804

Query: 393 ARKNNPIPQKSTGF 406
                   ++ T F
Sbjct: 805 GTILTKKRREETIF 818


>gi|41327771|ref|NP_004809.2| probable ATP-dependent RNA helicase DDX23 [Homo sapiens]
 gi|160385708|sp|Q9BUQ8|DDX23_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX23; AltName:
           Full=100 kDa U5 snRNP-specific protein; AltName:
           Full=DEAD box protein 23; AltName: Full=PRP28 homolog;
           AltName: Full=U5-100kD
 gi|12803125|gb|AAH02366.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo sapiens]
 gi|119578415|gb|EAW58011.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, isoform CRA_b [Homo
           sapiens]
 gi|119578419|gb|EAW58015.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, isoform CRA_b [Homo
           sapiens]
 gi|123981044|gb|ABM82351.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [synthetic construct]
 gi|123995847|gb|ABM85525.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [synthetic construct]
 gi|189065458|dbj|BAG35297.1| unnamed protein product [Homo sapiens]
          Length = 820

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 141/434 (32%), Positives = 209/434 (48%), Gaps = 35/434 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q
Sbjct: 452 WITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 511

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 512 GFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMP 571

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            + Q          E    +    ++  R  V   ++                       
Sbjct: 572 VSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 631

Query: 215 --ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             +  E      +     +       +  Q      IIF NQKK    L  SLEK G++ 
Sbjct: 632 AGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNA 691

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHR
Sbjct: 692 CTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHR 751

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     AQH  
Sbjct: 752 IGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHKP 805

Query: 393 ARKNNPIPQKSTGF 406
                   ++ T F
Sbjct: 806 GTILTKKRREETIF 819


>gi|330502250|ref|YP_004379119.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
 gi|328916536|gb|AEB57367.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
          Length = 441

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 130/370 (35%), Positives = 200/370 (54%), Gaps = 5/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA   L  +++ AV +  +V+PTP+Q   IP  L+  D+  IAQTG+GKTA+FVLP+L  
Sbjct: 2   FAQFALHERLLKAVAELNFVEPTPVQAAAIPPALEGKDLRVIAQTGSGKTAAFVLPLLNR 61

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L       +    R LIL PTRELA Q     E++ +   L   L+ GG  F+ Q   + 
Sbjct: 62  LLGDGNSKQRLSIRALILLPTRELAQQTLKEVERFAQFTFLKAGLVTGGEDFKVQA-AMM 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R  D+LI TPGR+++H N G L ++ +E+LV DEADRMLDMGF    Q +       +  
Sbjct: 121 RKIDILIGTPGRLIEHANAGNLPLDEVEVLVFDEADRMLDMGFAEDAQRLAEACGPHQTL 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L  + T  + L+++    L+ P+ + +N+ S   E      +     Y K    L   L 
Sbjct: 181 LFSATTGGNGLREMVAKVLKEPQHLMLNSVSQLNEGTRQQIITADHNYHK--EQLVDWLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +T    I+F N +     L   L   G     +HG  DQ+ R   +   ++G ++++V
Sbjct: 239 ANETYDKAIVFTNTRVQADRLYGKLVAAGVKAFVLHGEKDQKDRKLAIERLRQGAVRVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + +I
Sbjct: 299 ATDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGGEGLAVSLICHTDWNLMSSI 358

Query: 361 EKLIEKKVDW 370
           E+ ++++ + 
Sbjct: 359 ERYLKQRFER 368


>gi|195355988|ref|XP_002044465.1| GM11962 [Drosophila sechellia]
 gi|194131630|gb|EDW53672.1| GM11962 [Drosophila sechellia]
          Length = 946

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 134/439 (30%), Positives = 222/439 (50%), Gaps = 25/439 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   V+  +   G+ KPT IQ +  P+ L   D+ GIAQTG+GKT +++LP +
Sbjct: 238 VSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAI 297

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQN 116
                +    R   P  L+L PTRELA Q+      YG           + GG     Q 
Sbjct: 298 VHIGNQPPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQA 357

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+RG +V+I TPGR++D        +     LV+DEADRMLDMGF P I+ I   +  
Sbjct: 358 RDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 417

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ +++SAT   E+Q ++ +FL +  +I + + + +A       V    +  K   L+ 
Sbjct: 418 DRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVC 477

Query: 237 QLLQSQDTMKNG------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            L +     K+G      I+F   K  V ++   +  +G++  +IHG+  Q  R  +L +
Sbjct: 478 LLNEISPIKKSGSNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKD 537

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   +++A+D+A+RGLD+ D+ +V N+D PN +ENY+HRIGRTGR  + G A+T   
Sbjct: 538 FRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFT 597

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ---HNHARKNNPIPQKSTGFD 407
            ++ K    +  ++E+             P    +D+A+    +   + N     ++G D
Sbjct: 598 PDNAKQARELISVLEEAGQ---------TPSQALLDLARSMPSSGGYRGNKRWNNNSGGD 648

Query: 408 RRKKNYSS---QKSHIPLK 423
           R    ++    Q+++ PL 
Sbjct: 649 RNTGGHNGIYQQRNNNPLN 667


>gi|73996608|ref|XP_851051.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 2 [Canis familiaris]
          Length = 820

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 141/434 (32%), Positives = 209/434 (48%), Gaps = 35/434 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q
Sbjct: 452 WITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 511

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 512 GFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMP 571

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            + Q          E    +    ++  R  V   ++                       
Sbjct: 572 VSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 631

Query: 215 --ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             +  E      +     +       +  Q      IIF NQKK    L  SLEK G++ 
Sbjct: 632 AGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNA 691

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHR
Sbjct: 692 CTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHR 751

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     AQH  
Sbjct: 752 IGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHKP 805

Query: 393 ARKNNPIPQKSTGF 406
                   ++ T F
Sbjct: 806 GTILTKKRREETIF 819


>gi|168179718|ref|ZP_02614382.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|182669435|gb|EDT81411.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
          Length = 376

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 143/370 (38%), Positives = 213/370 (57%), Gaps = 6/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS  ++  +     ++PTPIQ ++I L+   +DV   AQTGTGKT +F+LPM 
Sbjct: 2   IKFKELGLSDSIIDVLKKQRIIEPTPIQEESIMLIKNGNDVIAEAQTGTGKTLAFLLPMF 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      +   + LI+ PTRELA Q+ +   K  +  +L +    GG    +Q KKL+
Sbjct: 62  ENISP---DINAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH NR  L   +++ LV+DEAD ML MGF   +++I    P  RQT
Sbjct: 119 NNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++   +++PK I +     T + I            ++       + 
Sbjct: 179 LCFSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNI---KQVLIETTDRRKQEDLCKIL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     IIFC  K+ V  L  +L K+G++   +HG+I Q  R +I+ +FK   IQ ++
Sbjct: 236 DEENPFMAIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLI 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HVFN+D+P  AE+YIHRIGRTGRAG  G  F  VA +D + +  I
Sbjct: 296 ATDVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLGMI 355

Query: 361 EKLIEKKVDW 370
           EK I+ K+  
Sbjct: 356 EKEIKFKIPR 365


>gi|260777929|ref|ZP_05886822.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605942|gb|EEX32227.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 398

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 146/383 (38%), Positives = 215/383 (56%), Gaps = 4/383 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  A+   GY KPT IQ K IP+VL+  D+   AQTGTGKTASFVLPML
Sbjct: 1   MPFSKLGLSQPITDAIQQLGYDKPTTIQTKAIPVVLRGEDLIAAAQTGTGKTASFVLPML 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G   R +  R LIL PTRELA QV +    YG++  LT   + GG+  +AQ + L
Sbjct: 61  EKLSQGETQRKKRIRGLILTPTRELAVQVEEKIRDYGQHLALTSLAMYGGVDEQAQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR++D + +  +    +E+LV+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IEGVDILVATPGRLIDMYGKRAVHFEEVEMLVLDEADRMLDMGFIDDINKILDRLPTDIQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++++++ +++  + +P  I +    ++ + IE   +                 
Sbjct: 181 HLLFSATLSNKVRDLAKTAVHDPYEISIAANQASKKNIEQWLITVDKDKKSALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++     +IF   K     L   LEK+G    A H    Q  R K+L +FK G IQ M
Sbjct: 238 IKENDWDQALIFIETKHGAAKLAQQLEKRGIEAEAFHSGRSQAVRSKLLEDFKAGKIQYM 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ + ARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 IATGVGARGIDIEGLTRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFKNLCM 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPL 382
           IE  +   ++    +      P+
Sbjct: 358 IESRLGHLIERREVEGFEPRKPV 380


>gi|16272830|ref|NP_439053.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae Rd KW20]
 gi|260579983|ref|ZP_05847813.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae RdAW]
 gi|1573911|gb|AAC22552.1| ATP-dependent RNA helicase (rhlB) [Haemophilus influenzae Rd KW20]
 gi|260093267|gb|EEW77200.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae RdAW]
          Length = 418

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 196/379 (51%), Gaps = 4/379 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 14  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 73

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +    +   PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 74  LLTHQDPNLKYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQAI 133

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P  + 
Sbjct: 134 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 193

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L    + T   +     F       E        +T        +   ++    L   L
Sbjct: 194 RLTMLFSATLSYKVRELAFED-MNEPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTL 252

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G + ++
Sbjct: 253 MEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDIL 312

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ A
Sbjct: 313 VATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPA 372

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+ I   +     +  +L
Sbjct: 373 IEEYIGHSIPVSQYETEAL 391


>gi|197100123|ref|NP_001125347.1| probable ATP-dependent RNA helicase DDX23 [Pongo abelii]
 gi|67460452|sp|Q5RC67|DDX23_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX23; AltName:
           Full=DEAD box protein 23
 gi|55727779|emb|CAH90640.1| hypothetical protein [Pongo abelii]
          Length = 820

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 141/434 (32%), Positives = 208/434 (47%), Gaps = 35/434 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q
Sbjct: 452 WITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 511

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L+ +    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 512 GFRLRMGCEIVIATPGRLIDVLENRYLVPSRCTYVVLDEADRMIDMGFEPDVQKILEHMP 571

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            + Q          E    +    ++  R  V   ++                       
Sbjct: 572 VSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 631

Query: 215 --ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             +  E      +     +       +  Q      IIF NQKK    L  SLEK G++ 
Sbjct: 632 AGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNA 691

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHR
Sbjct: 692 CTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHR 751

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     AQH  
Sbjct: 752 IGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHKP 805

Query: 393 ARKNNPIPQKSTGF 406
                   ++ T F
Sbjct: 806 GTILTKKRREETIF 819


>gi|327402381|ref|YP_004343219.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327317889|gb|AEA42381.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 410

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 129/373 (34%), Positives = 205/373 (54%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+  V+ A+   G+   TP+Q  +IP +L  +D+   AQTGTGKTA+F+LP+L
Sbjct: 1   MKFNELGLNDLVLEAIHHMGFENATPVQQLSIPEILANNDLLACAQTGTGKTAAFILPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
             L           TLIL PTRELA Q+    +      ++    + GG     +E Q  
Sbjct: 61  NKLTGK--EDTSINTLILVPTRELAVQIEQEIQGLSYFVSVGSMAVYGGGDGTRWEEQKS 118

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+++ TPG++L H  +G +  + +E LV+DEAD+MLDMGF   I+ I S +P  
Sbjct: 119 ALVEGTDIIVATPGKLLSHIMQGYVDFSQLEHLVLDEADKMLDMGFSDDIERIISHLPKK 178

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM  +++ ++   L NPK I ++     A   +H  +    Q +K    + +
Sbjct: 179 RQTLLFSATMPSKIKNLASKILINPKEIALSISKPAAGVTQHVVLCFDDQKNKTLDFILK 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                D++   I    + K    +         +   +  N++Q  R ++L  F+    +
Sbjct: 239 GRPEYDSII--IFTSAKIKVHEIVYALKRAGYKNTQGVSSNLEQEEREEVLRGFRSKRTR 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ +RG+DI ++  V N+D P  AE+Y+HRIGRT RA   G+A+TL+  +D+  +
Sbjct: 297 ILVATDVMSRGIDIKEINLVINYDAPRDAEDYVHRIGRTARANTKGEAYTLINPKDMPKL 356

Query: 358 DAIEKLIEKKVDW 370
             IE+LIE ++  
Sbjct: 357 ARIERLIEMEIQR 369


>gi|118444590|ref|YP_878428.1| ATP-dependent RNA helicase [Clostridium novyi NT]
 gi|118135046|gb|ABK62090.1| ATP-dependent RNA helicase [Clostridium novyi NT]
          Length = 371

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 135/373 (36%), Positives = 210/373 (56%), Gaps = 6/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF +LG+S  ++  +   G   PTPIQ  +I  +    DV   AQTGTGKT +F+LP+  
Sbjct: 3   DFKNLGISKNIIDILSREGIKSPTPIQENSIEFIKMGKDVIAEAQTGTGKTLAFLLPIFE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +          + LI+ PTRELA Q+ +   K  K  ++ +    GG   ++Q KKL+ 
Sbjct: 63  NISL---ESNFVQVLIVTPTRELAIQITEEAMKLKKAKDINILAAYGGKDIQSQLKKLKG 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH NR  + ++ ++ LV+DEAD+ML MGF   ++ I S      QTL
Sbjct: 120 NIQLIIATPGRLLDHLNRSTIKLDKLKTLVLDEADQMLYMGFKNEVEKIISYTSKKHQTL 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM  +++K++  +++ PK + V     T + I+   V T  +  +          +
Sbjct: 180 CFSATMNSDVKKLAYRYMKEPKVVSVKAEEVTLKNIQQFVVETTDRRKQDALCSVLDEDN 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFC  K+ V NL  +L K+G++   +HG++ Q  R +++  FK    Q ++A
Sbjct: 240 PFM---AIIFCRTKRRVDNLEEALHKRGYNCDKLHGDLAQAKRERVMKKFKNMDTQYLIA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HV+++D+P  AE+YIHRIGRTGRAG  GK    +  +D + ++ IE
Sbjct: 297 TDVAARGLDITGVTHVYSYDIPENAESYIHRIGRTGRAGEEGKTCLFIDPKDKRLLETIE 356

Query: 362 KLIEKKVDWLNGD 374
           K I+  +   N +
Sbjct: 357 KEIKLTIPRRNIE 369


>gi|296211536|ref|XP_002752462.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like
           [Callithrix jacchus]
          Length = 820

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 141/434 (32%), Positives = 209/434 (48%), Gaps = 35/434 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q
Sbjct: 452 WITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 511

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 512 GFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMP 571

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            + Q          E    +    ++  R  V   ++                       
Sbjct: 572 VSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 631

Query: 215 --ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             +  E      +     +       +  Q      IIF NQKK    L  SLEK G++ 
Sbjct: 632 AGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNA 691

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHR
Sbjct: 692 CTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHR 751

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     AQH  
Sbjct: 752 IGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHKP 805

Query: 393 ARKNNPIPQKSTGF 406
                   ++ T F
Sbjct: 806 GTILTKKRREETIF 819


>gi|32363501|sp|P44922|RHLB_HAEIN RecName: Full=ATP-dependent RNA helicase rhlB
          Length = 415

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 125/379 (32%), Positives = 196/379 (51%), Gaps = 4/379 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +    +   PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 71  LLTHQDPNLKYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQAI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P  + 
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L    + T   +     F    +           +T        +   ++    L   L
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNEPE-YIEIEPEQKTGHRIKEELFYPSNQDKMALLLTL 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G + ++
Sbjct: 250 MEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDIL 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ A
Sbjct: 310 VATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPA 369

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+ I   +     +  +L
Sbjct: 370 IEEYIGHSIPVSQYETEAL 388


>gi|312375048|gb|EFR22493.1| hypothetical protein AND_15188 [Anopheles darlingi]
          Length = 879

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 144/449 (32%), Positives = 235/449 (52%), Gaps = 13/449 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP L 
Sbjct: 209 SFYQMDLSRPLMKAIGALGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTLE 268

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L       +    + +L PTREL AQV    ++  +  N+ V + IGG+  +AQ   L 
Sbjct: 269 RLLYKPNAAQAVTRVLVLVPTRELGAQVYQVAKQLTQFTNVEVGIAIGGLDVKAQEAVLR 328

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D++I TPGR++DH         ++IEIL++DEADRMLD  F   ++ I      TRQ
Sbjct: 329 TNPDIVIATPGRLIDHIKNTPSFSLDSIEILILDEADRMLDEYFAEQMKEIIRSCSATRQ 388

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMT+E++ ++   L+ P +I VN   + A  +   F+            +   L
Sbjct: 389 TMLFSATMTEEVKDLAAVSLKKPVKIFVNNNQTVAFNLRQEFIRVREGREADREPILAAL 448

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + ++F   K+    L   L   G     +HG++ Q  R++ L  FK+  I ++
Sbjct: 449 VCRTFHDHCMVFVQTKRTAHRLRILLGLLGVKAGELHGDLTQAQRLESLKQFKDEQIDVL 508

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  + + + +  
Sbjct: 509 VATDVAARGLDISGVTTVINFVMPATLEHYIHRVGRTARAGRAGVSVSLAGELERRIVKD 568

Query: 360 IEK----------LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           I K          +  + +D     +++L   ++K+ +A+    +      Q+ T  +R+
Sbjct: 569 IVKNAVNPVKNRIIPGEIIDKYRAKVAALESEIDKV-LAEERAEKMLRQAEQQLTSTERK 627

Query: 410 KKNYSSQKSHIPLKESEKISKLQQDIQEN 438
            K  +  K+  P +E  +  + +++ ++ 
Sbjct: 628 LKGIAPHKTDGPPREWFQSQREKREEKDR 656


>gi|322436878|ref|YP_004219090.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321164605|gb|ADW70310.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 532

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 134/377 (35%), Positives = 203/377 (53%), Gaps = 9/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD  +S  +   +   G+  PTP+Q K IP  L+  D+   A TGTGKT SF++PM+  
Sbjct: 64  FADFNISASLKSRLAAGGFATPTPVQAKAIPPALEGRDILATASTGTGKTLSFLIPMIER 123

Query: 63  LEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +E       R +    R+LIL PTRELA QV + + K          L+ GG+    Q  
Sbjct: 124 MEANSEPSTRGKKGPIRSLILLPTRELAMQVLEAYAKINPQSKSDSVLVCGGLSENTQLD 183

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L RG  +++ TPGR+ D   R  + +N +E+LV+DE DRMLDMGF+P I+ I   +P T
Sbjct: 184 QLSRGPRLVVATPGRLEDFLRRRSVNLNFVEMLVLDEVDRMLDMGFLPAIRRIVGALPKT 243

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+ +SAT+   + ++  +++Q P RIE+ T S  ++ +E               L   
Sbjct: 244 RQTMCYSATLDANITEIVRDYVQKPVRIEIGTTSKPSDQVELKVFTVMQDQK----LGLL 299

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                +     ++F   K     +   LEK G     IHG+  Q  R   L  F  G  +
Sbjct: 300 NQMLNEHEGTFLVFSRTKHGADRISKKLEKLGHVADVIHGDRSQSQRTSALKGFSTGRHR 359

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ D+ HV N+D+P   E+++HRIGRTGRAG+ G A T V  ++    
Sbjct: 360 ILVATDVAARGIDVRDIAHVVNYDLPGTTEDFVHRIGRTGRAGKKGVATTFVMPQERSDA 419

Query: 358 DAIEKLIEKKVDWLNGD 374
             +E+ ++ K +W   D
Sbjct: 420 RKMERELKIKFEWKEAD 436


>gi|242005222|ref|XP_002423470.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212506558|gb|EEB10732.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 422

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 137/426 (32%), Positives = 210/426 (49%), Gaps = 10/426 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L+  +V      G  KPTPIQ   IP +L+ +D  G A+TG+GKT +F LP+L  
Sbjct: 5   FEDLNLNKWIVRQCDSFGLTKPTPIQAHCIPKILEGNDCIGCAKTGSGKTLAFALPILQK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L            L+L PTRELA Q+ + F  YGK  NL + ++ GG+    Q ++L + 
Sbjct: 65  L---SEEPFGIFALVLTPTRELAFQIGEQFLAYGKVINLKLCVISGGMDMVTQGQELSKR 121

Query: 123 ADV-LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             + +           +     +  I  LV+DEADR+L   F   I  I   +P  +Q L
Sbjct: 122 PHIVVSTPGRLADHLDSCNTFSLKKIRFLVLDEADRLLSGQFDDQISTIFKSLPLKKQIL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+ D L++  E   +N       +  +T +   +   +            + QL +
Sbjct: 182 LFSATINDTLKQAEELLSKNVFSFIDKSDVATVDNLQQFYVLCPDHVKDAYLVEVIQLYR 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +   N IIF +  +N   L  +L + GF   AIH  + Q+ R+  LS FK   ++ ++
Sbjct: 242 KNNENGNIIIFTDTCRNCQLLSMTLNEVGFENVAIHSMMKQKERLAALSRFKSNIVKTLI 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V N  +PN  ++YIHR+GRT RAGR G + +LV   DIK I AI
Sbjct: 302 ATDIASRGLDIPTVELVINHSIPNVPKDYIHRVGRTARAGRAGMSVSLVTPVDIKLIHAI 361

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E +I  K+   + +   +   L ++ +      ++   I    T F  +K     +K  +
Sbjct: 362 ESIINTKLKEYSINDKEVIKILTQVKV-----TKREAEIKLDETDFYEKKMINKRKKLMM 416

Query: 421 PLKESE 426
              ES+
Sbjct: 417 EAAESD 422


>gi|297744770|emb|CBI38032.3| unnamed protein product [Vitis vinifera]
          Length = 797

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 139/429 (32%), Positives = 215/429 (50%), Gaps = 32/429 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  LS +++ AV  AGY  P+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPMLT
Sbjct: 307 SWVESKLSTELLKAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLT 366

Query: 62  I-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                           P  +++ PTRELA Q+ D   K+     + V  ++GG   E Q 
Sbjct: 367 YISRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQG 426

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY---------- 166
            ++ +G +V+I TPGR++D   R   ++N    +V+DEADRM+DMGF P           
Sbjct: 427 FRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 486

Query: 167 -------IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
                             R T +FSATM   +++++  +L+NP  + + T     +  + 
Sbjct: 487 SNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGT---AGKATDL 543

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                      +     Q L  +   K  I+F N KK+  NL   L+K G+ V  +HG  
Sbjct: 544 ITQHVIMMKESEKMFKLQKLLDELGDKTAIVFINTKKSADNLAKGLDKAGYRVTTLHGGK 603

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q  R   L  F+     ++VA+D+A RG+DIPDV HV N+D+P   E Y HRIGRTGRA
Sbjct: 604 SQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRA 663

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           G+ G A T +   D      +++++ +       + S + P L + + ++       +  
Sbjct: 664 GKTGVATTFLTLHDSDVFYDLKQMLIQ-------NNSPVPPELARHEASKFKPGAIPDRP 716

Query: 400 PQKSTGFDR 408
           P+++    R
Sbjct: 717 PRRNDTESR 725


>gi|171680181|ref|XP_001905036.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939717|emb|CAP64943.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1221

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 127/426 (29%), Positives = 209/426 (49%), Gaps = 7/426 (1%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
             ++  GL+  ++  +   GY KPTPIQ++ +P+++   DV G+A+TG+GKT +F LPM  
Sbjct: 581  KWSQCGLTRPILDTIEGLGYEKPTPIQMQALPVIMSGRDVIGVAKTGSGKTMAFALPMLR 640

Query: 60   LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                +   +    P  LI+ PTREL  Q+  +   + K   L      GG   + Q  +L
Sbjct: 641  HIKDQDPVSGDDGPIALIMTPTRELCTQIYTDLLPFTKVLKLRAVAAYGGNAIKDQIAEL 700

Query: 120  ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +RGA++++ TPGR++D     +     +     LV+DEADRM DMGF P +  I + V  
Sbjct: 701  KRGAEIIVATPGRMIDLLAANSGRVTNLKRATYLVLDEADRMFDMGFEPQVMKIFNNVRP 760

Query: 177  TRQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT+LFSATM   +     +      +           E  +   +   ++   +   L
Sbjct: 761  DRQTILFSATMPRIIDALTKKVLRDPVEITVGGRSVVAPEITQVVEIIDESKKFVRLLEL 820

Query: 236  QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
               L + D     +IF  +++   +L   L ++G+   +IHG  DQ  R   +S+FK+G 
Sbjct: 821  LGELYADDDDVRALIFVERQEKTDDLLRELLRRGYGCMSIHGGKDQEDRNSTISDFKKGV 880

Query: 296  IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
              +++A+ +AARGLD+  +  V N+DVPN  E+Y+HR GRTGRAG  G A T + +E   
Sbjct: 881  CPILIATSVAARGLDVKQLKLVINYDVPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQEN 940

Query: 356  HIDAIEKLIEKKVDWLNGDLSSLNP-PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                + K +E+    +   L+ +     EK+   +   A        +    +R      
Sbjct: 941  CAPGVAKALEQSGQPVPERLNEMRKSWKEKVKAGKAKDASGFGGKGLERLDKEREAARLR 1000

Query: 415  SQKSHI 420
             +K+H 
Sbjct: 1001 ERKTHK 1006


>gi|89052606|ref|YP_508057.1| DEAD/DEAH box helicase-like [Jannaschia sp. CCS1]
 gi|88862155|gb|ABD53032.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1]
          Length = 451

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 137/374 (36%), Positives = 222/374 (59%), Gaps = 5/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFV--LPM 59
           DF  LGL P +   +  AG+ +PTPIQ + IPL L  HD+ G+AQTGTGKT +F   L  
Sbjct: 20  DFDMLGLKPILAKTLKTAGFSEPTPIQNQAIPLALDGHDIMGLAQTGTGKTLAFGLPLLE 79

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   G+   +  R LIL PTREL  Q+AD+   + +N  + +A ++GG     Q   L
Sbjct: 80  HLLSLHGKPEPKTARALILAPTRELVNQIADSLRVFTQNTPVKIATVVGGQSIGRQISTL 139

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR++D  +R  + ++ ++ LV+DEAD+MLD+GFI  ++ I   +   RQ
Sbjct: 140 SRGTDILVATPGRLMDLMDRRAIDLSTVKHLVLDEADQMLDLGFIHALRKIAPALGTPRQ 199

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  ++++++  +L NPK+++V+ P   A+ +                   + +
Sbjct: 200 TMLFSATMPKQMEELASAYLSNPKKVQVSPPGKAADKVTQVVHFMPKPAK---PAKLREV 256

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++D     ++F   K     L   L   G++  +IHGN  Q  R + +  F++GTI+++
Sbjct: 257 LNEDPDALVLVFGRTKHGCEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRDGTIKIL 316

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP V +V N+++P+  +NY+HRIGRT RAGR G+A    + E++  +  
Sbjct: 317 VATDVAARGIDIPGVAYVINYELPDTPDNYVHRIGRTARAGREGEAIAFCSAEEVDLLVQ 376

Query: 360 IEKLIEKKVDWLNG 373
           IEK+++  +   +G
Sbjct: 377 IEKVMKMSIPVASG 390


>gi|328869268|gb|EGG17646.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 860

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 146/408 (35%), Positives = 222/408 (54%), Gaps = 20/408 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  +  AV   GY +PTPIQ K IPL+L   D+   A TG+GKTA+F+LP+L 
Sbjct: 235 TFEELHLSRPLQKAVAKLGYTQPTPIQAKAIPLILNGKDILASATTGSGKTAAFILPILE 294

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L    A  R+ R LI+ PTRELA Q    FE   +  N+   L++GG+  + Q  +L +
Sbjct: 295 RLLYRDATHRVSRVLIVLPTRELALQCHSVFESLAQFTNVQSCLVVGGLSNKVQEHELRK 354

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR++DH  N   + + +IEILV+DEADR+LDMGF   +  +    P  RQT
Sbjct: 355 RPDVIIATPGRLIDHLLNAHDVGLEDIEILVLDEADRLLDMGFKDELNRVVESCPDGRQT 414

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY-SKKCALLQQLL 239
           LLFSAT++D+++ +++  L  P R+ V+     A T+E  F+       + + A+L  L 
Sbjct: 415 LLFSATLSDDVKLLAKLSLSQPVRVAVDALFQVASTLEQEFIKIKPGQLADRTAMLLSLC 474

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    I+F   KK V  +   L   G  V  +HG+++Q  R + L +F+ G +  +
Sbjct: 475 TRVFNGGGCIVFFRSKKEVHRIAILLGLSGLKVGELHGDLNQEQRFEALQSFRNGEVDFL 534

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  V  V N+++P     YIHR+GRT RAG  G++ + + + D K +  
Sbjct: 535 LATDIAARGLDVLGVRTVINYNMPRSLAQYIHRVGRTARAGLAGRSCSFITEADRKILKD 594

Query: 360 I-----------------EKLIEKKVDWLNGDLSS-LNPPLEKIDIAQ 389
           I                  KL   K+D +  D+   +   L ++D  +
Sbjct: 595 IVSRAKTKAKSRTVAQESIKLWRAKIDEMTDDVKDIIREELRELDFKK 642


>gi|88706512|ref|ZP_01104216.1| ATP-dependent RNA helicase DbpA [Congregibacter litoralis KT71]
 gi|88699224|gb|EAQ96339.1| ATP-dependent RNA helicase DbpA [Congregibacter litoralis KT71]
          Length = 462

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 136/363 (37%), Positives = 201/363 (55%), Gaps = 6/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA L LSP  + A+   GY   TP+Q ++IPL+LQ  DV   A+TG+GKTA+F + +L 
Sbjct: 5   DFAALPLSPAQLEALAALGYEHMTPVQAQSIPLLLQGKDVIARARTGSGKTAAFGIGLLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            +     R    + L+L PTRELA QV+    +          + +  G PF  Q   LE
Sbjct: 65  TI---NPRFFGVQALVLCPTRELAEQVSGELRRLASRMANIKLVTLCGGKPFGPQVGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRI DH  R  L ++ +++LV+DEADRMLDMGF   ++ I +  P +RQT
Sbjct: 122 HGAHIVVGTPGRIQDHLGRDTLKLDGLKVLVLDEADRMLDMGFADSMEAIVAKTPRSRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + ++K+S +  + P  + V+   +  E +         ++ +        L 
Sbjct: 182 LLFSATYPENIRKMSASIQRQPSMVTVDEEVAHKEEVIEQLFYEVQKHER--HTTLLALF 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T  N ++FCN KK    +   L        AIHG++DQR R ++L  F   +  ++V
Sbjct: 240 EHYTPANAVVFCNTKKQCDEVASVLRDYDIEARAIHGDLDQRERDQVLVQFANNSCPVLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++P   E Y+HRIGRTGRAG  G A ++V   +   I  I
Sbjct: 300 ATDVAARGLDIKSLAMVINYELPRDPEVYVHRIGRTGRAGETGLAMSIVIPSETHRISKI 359

Query: 361 EKL 363
           E+ 
Sbjct: 360 EEF 362


>gi|325119088|emb|CBZ54640.1| hypothetical protein NCLIV_050680 [Neospora caninum Liverpool]
          Length = 578

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 121/409 (29%), Positives = 192/409 (46%), Gaps = 32/409 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F        ++  +   G+ KPT IQ++  P+ L   D+ GIA+TG+GKT +F+LP + 
Sbjct: 128 TFEYTSFPSYILDVINQTGFQKPTAIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIV 187

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       +   P  LIL PTREL  Q+      +  +  +  A+  GG+P   Q  +L
Sbjct: 188 HINAQPYLSKGDGPIVLILAPTRELVEQIRTQCRTFAASSKIHHAVAYGGVPKRPQIMEL 247

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGA++ +  PGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 248 ERGAEICVACPGRLIDFLESRVTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQ 307

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+Q ++ +  +                          Q        +++ 
Sbjct: 308 TLMWSATWPKEVQNLARDLCKEEPVHINVGSLDLQACQNIKQEVMVVQAPTSRQETRKVP 367

Query: 240 ------------------------------QSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269
                                         +        +IF   K+   NL   +  +G
Sbjct: 368 RRVEKCADEEEFGDSCGVEYEKRGQLMSLLRRIMDGSKILIFAETKRGADNLTRDMRVEG 427

Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329
           +   ++HG+  Q  R  +L  FK G   +MVA+D+A+RGLD+ D+ HV N+D+PN+ E+Y
Sbjct: 428 WPALSLHGDKKQEERTWVLDEFKNGRNPIMVATDVASRGLDVKDIRHVINYDMPNQIEDY 487

Query: 330 IHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           IHRIGRTGRAG  G A+T    +  +    + +++      +  +L SL
Sbjct: 488 IHRIGRTGRAGAKGCAYTFFTPDKSRLARELVRVLRGANQPVPPELESL 536


>gi|60501853|gb|AAX22126.1| vasa [Carassius auratus]
          Length = 688

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 141/431 (32%), Positives = 222/431 (51%), Gaps = 31/431 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 251 MTFDEAGLCESLRKNVTKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 310

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + V+ P  +I+ PTREL  Q+     K+     +   ++ GGI    
Sbjct: 311 QRLMADGVAASKFSEVQEPEAIIVAPTRELINQIYLEAGKFAYGTCVRPVVVYGGINTGY 370

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
             +++ +G ++L  TPGR+LD   RGK+ ++ +  LV+DEADRMLDMGF P ++      
Sbjct: 371 TIREVLKGCNILCGTPGRLLDIIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRKLVGSP 430

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++Q+++ +FL+             A +     +    QYSK
Sbjct: 431 GMPSKEDRQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIIQVDQYSK 490

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +       L      +  ++F   K++   +   L ++  S  +IHG+ +QR R K LS+
Sbjct: 491 RD--QLLDLLRSTGTERTMVFVETKRSADFIATFLCQEKLSTTSIHGDREQREREKALSD 548

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI  V HV NFD+P+  + Y+HRIGRTGR G   +A +   
Sbjct: 549 FRTGQCPVLVATSVAARGLDIEQVQHVVNFDLPSSIDEYVHRIGRTGRCGNIRRAVSFFN 608

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            E D     ++ K+       L+G    +   LE+I  + H            +TGF+ R
Sbjct: 609 PESDTPLARSLAKV-------LSGAQQEVPKWLEEIAFSAH-----------GTTGFNPR 650

Query: 410 KKNYSSQKSHI 420
            K ++S  +  
Sbjct: 651 GKVFASTDTRK 661


>gi|60501851|gb|AAX22125.1| vasa-2 [Carassius auratus]
          Length = 677

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 141/431 (32%), Positives = 222/431 (51%), Gaps = 31/431 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F + GL   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 240 MTFDEAGLCESLRKNVTKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 299

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + V+ P  +I+ PTREL  Q+     K+     +   ++ GGI    
Sbjct: 300 QRLMADGVAASKFSEVQEPEAIIVAPTRELINQIYLEAGKFAYGTCVRPVVVYGGINTGY 359

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
             +++ +G ++L  TPGR+LD   RGK+ ++ +  LV+DEADRMLDMGF P ++      
Sbjct: 360 TIREVLKGCNILCGTPGRLLDIIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRKLVGSP 419

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++Q+++ +FL+             A +     +    QYSK
Sbjct: 420 GMPSKEDRQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIIQVDQYSK 479

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +       L      +  ++F   K++   +   L ++  S  +IHG+ +QR R K LS+
Sbjct: 480 RD--QLLDLLRSTGTERTMVFVETKRSADFIATFLCQEKLSTTSIHGDREQREREKALSD 537

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI  V HV NFD+P+  + Y+HRIGRTGR G   +A +   
Sbjct: 538 FRTGQCPVLVATSVAARGLDIEQVQHVVNFDLPSSIDEYVHRIGRTGRCGNIRRAVSFFN 597

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            E D     ++ K+       L+G    +   LE+I  + H            +TGF+ R
Sbjct: 598 PESDTPLARSLAKV-------LSGAQQEVPKWLEEIAFSAH-----------GTTGFNPR 639

Query: 410 KKNYSSQKSHI 420
            K ++S  +  
Sbjct: 640 GKVFASTDTRK 650


>gi|321467260|gb|EFX78251.1| hypothetical protein DAPPUDRAFT_213150 [Daphnia pulex]
          Length = 487

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 204/380 (53%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +      V+  +   G+ +PT IQ +  P+ L   ++ GIAQTG+GKT ++ LP + 
Sbjct: 61  SFDEASFPDYVMTEIRRQGFKEPTSIQAQGWPIALSGSNMVGIAQTGSGKTLAYTLPAIV 120

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  LIL PTRELA Q++   + +G +  +    + GG P   Q + +
Sbjct: 121 HINHQPYLEPGDGPIALILAPTRELAQQISSTAKDFGSSSRIRNTCVFGGAPKGPQLRDI 180

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG +++I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 181 ERGVEIMIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 240

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQL 238
           TL++SAT   E+++++E FL +  +I V + + +A       +    ++ K+   +    
Sbjct: 241 TLMWSATWPKEVRQLAEEFLTDYIQINVGSLTLSANHNILQIIDVCQEHEKETKLMTLLQ 300

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               +     IIF   K+ V ++  ++ + G+    IHG+  Q  R  +L+ F+ G   +
Sbjct: 301 EIGAEDENKTIIFAETKRKVDSITRAMRRDGWPAMCIHGDKAQPERDWVLNEFRSGKAPI 360

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ DV  V NFD PN +E+Y+HRIGRTGR+ R G A+T     + K   
Sbjct: 361 LVATDVAARGLDVDDVKFVINFDYPNCSEDYVHRIGRTGRSQRTGTAYTFFTPNNSKQAQ 420

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    +N  L  L
Sbjct: 421 DLVNVLTEANQVVNPKLYEL 440


>gi|300770793|ref|ZP_07080671.1| DEAD/DEAH box family ATP-dependent RNA helicase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762350|gb|EFK59168.1| DEAD/DEAH box family ATP-dependent RNA helicase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 603

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 139/375 (37%), Positives = 229/375 (61%), Gaps = 9/375 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHD-VCGIAQTGTGKTASFVLP 58
           M+ F +LG+  +VV A+ + G+ KP+PIQ K IP++L  +D   G+AQTGTGKTA+F LP
Sbjct: 1   MNPFLELGIRHEVVNAISELGFEKPSPIQEKAIPVLLTGNDDFVGLAQTGTGKTAAFGLP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNK 117
           +L  L+  +   + P+ L+L PTREL  Q+A + EK+ K  +    + + G      Q +
Sbjct: 61  LLEQLDFSQ---KHPQALVLCPTRELCLQIAKDLEKFAKYIDGVHVVAVYGGANISDQLR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           ++ RG  +++ TPGR+LD   R  +  +N++ +V+DEAD ML+MGF   I NI S  P  
Sbjct: 118 QIRRGVQIVVATPGRMLDIIGRNAIDFSNVKYVVLDEADEMLNMGFQEDINNILSETPEE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           ++T LFSATM  E++++++N++ +P  + V T ++    IEH     Y   +K      +
Sbjct: 178 KKTWLFSATMPREVRRIAQNYMTDPVELTVGTKNTGNANIEH---HYYLIRAKDKYAAFK 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +    GI+FC  K     +  +L K G++  ++HG++ Q+ R K++  +++ ++Q
Sbjct: 235 RIVDSNPEIFGIVFCRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRDRSLQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L++A+D+AARG+D+ DV HV NF +P+  ENY HR GRT RAG+ G + +LV  +++  I
Sbjct: 295 LLIATDVAARGIDVNDVTHVINFSLPDEVENYTHRSGRTARAGKTGISLSLVNVKELSKI 354

Query: 358 DAIEKLIEKKVDWLN 372
             IEK+I K  +   
Sbjct: 355 RHIEKIIGKPFERKQ 369


>gi|167624613|ref|YP_001674907.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167354635|gb|ABZ77248.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 458

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 118/384 (30%), Positives = 187/384 (48%), Gaps = 3/384 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F D  L  +++ ++   G   PT IQ + IP+ L   D+   ++TG+GKT +F+LP M
Sbjct: 11  LQFTDFALDQRLLQSLKHMGIDTPTEIQEQAIPIALAGKDLMASSKTGSGKTLAFLLPAM 70

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++       R PR +IL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 71  QRLISCKALSKRDPRVVILLPTRELATQVYSQLRLLVANTQFKATKILGGENFNDQAKAL 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH  +  L +N +E+L++DEADRMLD+GF   ++ I +     R+
Sbjct: 131 ARDPHFVVATPGRLADHLKQHHLHLNGLELLILDEADRMLDLGFAEQLKLINNAADHKRR 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D                 V   +S  E  +         +      +   +
Sbjct: 191 QTLMFSATLDHGDVNDIANELLKFPEHVAIGASNLEHKDITQRIFLCDHLDHKEAILTRI 250

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  IIF   +++   L   L  +GF   ++ G + Q +R +I+  F  G  Q++
Sbjct: 251 LKEEQQKQIIIFTATRQDTDRLATKLAAEGFKTASLSGELKQNARNQIMDEFSRGLQQIL 310

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +   
Sbjct: 311 VTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWVNFTQ 370

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE 383
           ++  + K  ++   +L  L     
Sbjct: 371 VQTFLNKTFNF--SELEGLKAKFS 392


>gi|158259303|dbj|BAF85610.1| unnamed protein product [Homo sapiens]
          Length = 820

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 141/434 (32%), Positives = 208/434 (47%), Gaps = 35/434 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q
Sbjct: 452 WITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 511

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 512 GFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMP 571

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE-------------------- 215
            + Q          E    +    ++  R  V   ++                       
Sbjct: 572 VSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 631

Query: 216 ---TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
                E      +     +       +  Q      IIF NQKK    L  SLEK G++ 
Sbjct: 632 AGRPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNA 691

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHR
Sbjct: 692 CTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHR 751

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     AQH  
Sbjct: 752 IGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHKP 805

Query: 393 ARKNNPIPQKSTGF 406
                   ++ T F
Sbjct: 806 GTILTKKRREETIF 819


>gi|308809810|ref|XP_003082214.1| MGC81303 protein (ISS) [Ostreococcus tauri]
 gi|116060682|emb|CAL57160.1| MGC81303 protein (ISS) [Ostreococcus tauri]
          Length = 382

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 134/366 (36%), Positives = 201/366 (54%), Gaps = 7/366 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL  ++V A  + G+ +P+ IQ K+IP  LQ  DV G+AQTG+GKT +F LP+L 
Sbjct: 20  TFASLGLCKELVSACEELGWREPSAIQQKSIPEALQGRDVIGLAQTGSGKTGAFALPILQ 79

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ-NKKLE 120
            L       R   +LIL PTRELA Q+A+  E  G+   +  A L+GGI   +Q     +
Sbjct: 80  SL---LDEPRTYHSLILSPTRELAIQIAEQVEALGRGIGVRTATLVGGIEMTSQAIMLGK 136

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   V+      +    N     +  +++LV+DEADR+L++ F   I  I  ++P  R+T
Sbjct: 137 RPHVVVGTPGRVVDHLENTKGFGLKALKVLVLDEADRLLNLDFEEEIDKILRVIPQDRRT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L++P ++EV+   ST +++           +K        L 
Sbjct: 197 QLFSATMTSKVQKLQRACLRDPVKVEVSAKYSTVDSL---RQHYLFIPAKHKDCYATYLF 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++ +    I+F         L       GF    IHG + Q  R+  L  FK G   +++
Sbjct: 254 NELSASTLIVFARTCDQTRKLALIARNLGFGAVPIHGQMSQPKRIAALQKFKAGERNILI 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V N+DVP  +++Y+HR+GRT RAGR G A T+V + D++    I
Sbjct: 314 ATDVASRGLDIPSVDVVINYDVPQNSKDYVHRVGRTARAGRSGLAVTMVTQYDVELYQKI 373

Query: 361 EKLIEK 366
           E+LI K
Sbjct: 374 ERLINK 379


>gi|170099199|ref|XP_001880818.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644343|gb|EDR08593.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 449

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 121/423 (28%), Positives = 202/423 (47%), Gaps = 15/423 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCG--------IAQTGTGKTA 53
            FA+LG+   ++ A+ +  +  PT IQ   IP  +   DV G        IA TG+GKT 
Sbjct: 5   TFAELGICAPLLQALEELKHTTPTEIQTGCIPQAIAGRDVIGSVWKLVIGIAPTGSGKTL 64

Query: 54  SFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-- 111
           +F +P+L  L             +L PTRELA Q++  FE  G    +   +++GG    
Sbjct: 65  AFAIPILHRLWDNPQGYFA---CVLSPTRELAYQISAQFEALGAAMGVRSVVIVGGDDDR 121

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            +   +  ++   ++                 + ++ + V+DEADR+LD+ F   I  I 
Sbjct: 122 VQQAVQLAQKPHIIVATPGRLHDHLNFHTTQPIIHLGLQVLDEADRLLDLDFQREITEIM 181

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
             +P  R T LFSATMT  + K+    L +P R++ +    T  +             K+
Sbjct: 182 QSIPKERCTYLFSATMTANVSKLQRASLSDPVRVDASLFRYTTVSTLLQHYLLCPLVEKE 241

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L+  +      +   I+F     +   L   L   GF    +HG + Q  R+ + + F
Sbjct: 242 VTLVYLINSLAQNLI--IVFVRTVADAKCLSIILRSLGFEAVPLHGELTQSQRLGVFTRF 299

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G  +++VA+D+A+RGLD+P+V  V N+DVP  +++YIHR+GRT RAGR GK+  +V +
Sbjct: 300 KSGKSRILVATDVASRGLDVPNVDVVINYDVPTHSKDYIHRVGRTARAGRAGKSILMVTQ 359

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            D + +  +EK++ +K+D    DL  +    E++  A      + N   +   G  +R+ 
Sbjct: 360 YDAELMLRLEKVLNRKLDLYPTDLQEIALLKERVVEAGRLARNQLNEESKARGGGKKRRY 419

Query: 412 NYS 414
             S
Sbjct: 420 KLS 422


>gi|167855638|ref|ZP_02478397.1| ornithine carbamoyltransferase [Haemophilus parasuis 29755]
 gi|167853265|gb|EDS24520.1| ornithine carbamoyltransferase [Haemophilus parasuis 29755]
          Length = 406

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 130/402 (32%), Positives = 203/402 (50%), Gaps = 9/402 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   V+ A+   G+   TPIQ KT+P  L R D+ G AQTGTGKT +F++     
Sbjct: 10  FIDFPIHDSVLAALDSKGFEFCTPIQAKTLPYTLIRQDIAGQAQTGTGKTLAFLVATFHH 69

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                   +   PR LIL PTRELA Q+A +     +  +L +AL  GG  ++ Q K++E
Sbjct: 70  LLNHDIPTKHNQPRALILAPTRELAVQIASDASILTQYADLRLALAYGGDGYDKQLKEIE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P   + 
Sbjct: 130 RGVDILIGTTGRVIDYVKQGIIDLDKIQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEER 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
                + T   +     F       E         T        +   ++    L   L 
Sbjct: 190 FTMLFSATLSHRVRELAFEDMHN-AEYVEIEPLQRTGHRIKEELFYPSNEDKMALLLTLM 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     I+F N K     +   L   G  V  + G+I Q+ R+ +L +F +G + ++V
Sbjct: 249 EEEWPDRCIVFANTKHKCEEIWSYLSADGHRVGLLTGDIPQKKRLALLDSFTQGELDILV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL IPDV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +    ++ AI
Sbjct: 309 ATDVAARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACERYAVNLPAI 368

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           E+ I   +     D   L      + + +   A+   P  +K
Sbjct: 369 EEYIGHAIPVSQYDSEVL------LALPKPQKAKTRTPQGKK 404


>gi|46446899|ref|YP_008264.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400540|emb|CAF23989.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 407

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 123/404 (30%), Positives = 213/404 (52%), Gaps = 15/404 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L P ++ A+    + +P+ IQ + IPL+ ++ D+  ++QTG+GKTA+  +P+   
Sbjct: 17  FITFNLDPLILKALDKMNFKEPSRIQTEAIPLIQKKQDLIALSQTGSGKTATCAIPICNR 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +      +   + LI+ PTRELA Q A   +K GK   +    + GG     Q  KL+ G
Sbjct: 77  VNT---ELTDIQALIIVPTRELALQYATETQKIGKYKGVKAFAIFGGEDSALQQSKLKHG 133

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             VL+ TPGR++D     ++ ++++E L++DEAD ML MGF   +  I   +  + QTLL
Sbjct: 134 VQVLVATPGRLIDFIYSRQIDLSHVETLILDEADEMLSMGFYDDLVFIIQCLNHSHQTLL 193

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +Q+++++ +++P+ + +        +            + +       L  +
Sbjct: 194 FSATMPAAIQRLAKHHMKDPQEVNL---ILEQASPHLLEHCFVYCLAHQRDHELIQLIKE 250

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     IIFC  +  V  +C +L+     V  +H  ++Q  R  + + F+ G I+L+VA+
Sbjct: 251 NNPTQAIIFCQSRFQVEKVCRTLQSHLDGVDFLHAGLNQDIRTIVTNKFRTGKIRLLVAT 310

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ ARGLD   V HVF + + + ++ Y+HR GRTGR G+ G   +LV   ++ +++AI K
Sbjct: 311 DIVARGLDFSKVSHVFIYQLSHESDVYVHRSGRTGRYGKTGVVISLVTSRELPYLNAILK 370

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
            I+++  W+        PP EK + A+    RK  P P K +  
Sbjct: 371 QIKQEPRWIGC------PPPEKQEAAK---PRKRRPYPNKKSSK 405


>gi|260550927|ref|ZP_05825133.1| II DNA and RNA helicase [Acinetobacter sp. RUH2624]
 gi|260406054|gb|EEW99540.1| II DNA and RNA helicase [Acinetobacter sp. RUH2624]
          Length = 383

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 201/377 (53%), Gaps = 6/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++  A+   G+ + TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 5   FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 63  LEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L     + +     PR LIL PTRELA Q+  + +   K  NL +  L+GG+ F+ Q K+
Sbjct: 65  LLNNPVKEQRFRGEPRALILAPTRELALQIESDAKFLTKFSNLHLVTLLGGVDFDKQKKQ 124

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P  
Sbjct: 125 LDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRK 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q      + T     V     Q              +T        Y    +    L Q
Sbjct: 185 EQRQTLMFSAT-FSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQ 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  ++ +   +IF N++  V  L   L+K G+ V  + G I Q  R+K+L  FK+G   
Sbjct: 244 DILREEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHN 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +M+A+D+A RG+ +  V HV NF +P ++++Y+HRIGRTGRAG  G + + ++++D  ++
Sbjct: 304 IMIATDVAGRGIHVDGVSHVINFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDAFYL 363

Query: 358 DAIEKLIEKKVDWLNGD 374
             IEK I KK+     D
Sbjct: 364 PEIEKAIGKKLPLTRLD 380


>gi|242373863|ref|ZP_04819437.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
 gi|242348417|gb|EES40019.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
          Length = 447

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 137/449 (30%), Positives = 215/449 (47%), Gaps = 22/449 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ + IP +L+  ++ G +QTGTGK+ SF+LP++  
Sbjct: 6   FEHFNLDESLIKAVQDLNFEKPTEIQNRIIPRILKGTNLIGQSQTGTGKSHSFLLPLMQK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNKKLER 121
           ++     V+ P+ +++ PTRELA Q+        +        L IGG   E   ++  R
Sbjct: 66  IDV---DVQEPQAIVVAPTRELAQQLFQAASHLSQFKQDVSVKLFIGGTDIEKDKQRCNR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L  +    L++DEAD M+D+G I  +  I + +       
Sbjct: 123 QPQLIIGTPTRINDLAQGGYLHAHLASNLIVDEADLMIDLGLIEDVDYIAARLDDEAHIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+   LQ     +L  P+ +EV++ S   + IE   + T         L       
Sbjct: 183 VFSATIPKSLQPFLNKYLSQPEFVEVDSKSQNKKNIEFYLIPTKGTAKIDKTLSL---ID 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFCN ++N   L +SL  +G  V  IHG +  R R + +   +    Q ++A
Sbjct: 240 MLNPYLCIIFCNSRENANELANSLNNEGIKVGMIHGGLTPRERKQQMKRIRNLDFQYVIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  IE
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 362 K--LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN---NPIPQKSTGFDRR------K 410
                 + VD  NG+L     P++  D  +    + +   N +  K     +R      K
Sbjct: 360 DKGYHFENVDIKNGEL----KPIKAHDTRRTRQRKDDHLTNEVKHKVRSKSKRKVKPGYK 415

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQEND 439
           K +  +   +  +E +  SK Q   +  +
Sbjct: 416 KKFKQEVEKMKRQERKLYSKRQNRQKRKN 444


>gi|149732732|ref|XP_001496163.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
           isoform 1 [Equus caballus]
          Length = 725

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 123/389 (31%), Positives = 204/389 (52%), Gaps = 13/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 289 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 348

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             + +          ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 349 AHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGH 408

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D  ++ K+ +  ++ LV+DEADRMLDMGF P ++      
Sbjct: 409 SIRQIVQGCNILCATPGRLMDIISKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCP 468

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+QK++  FL++            A       +    QYSK
Sbjct: 469 GMPSKEQRQTLMFSATFPEEIQKLAGEFLKSKYLFVAVGQVGGACRDVQQTILQVGQYSK 528

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 529 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 586

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 587 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSAIDEYVHRIGRTGRCGNTGRAVSFFD 646

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
            E D      + K++      +   L  +
Sbjct: 647 PESDSHLAQPLVKVLSDAQQDVPAWLEEI 675


>gi|149732736|ref|XP_001496190.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
           isoform 3 [Equus caballus]
          Length = 691

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 123/389 (31%), Positives = 204/389 (52%), Gaps = 13/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 255 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 314

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             + +          ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 315 AHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGH 374

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D  ++ K+ +  ++ LV+DEADRMLDMGF P ++      
Sbjct: 375 SIRQIVQGCNILCATPGRLMDIISKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCP 434

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+QK++  FL++            A       +    QYSK
Sbjct: 435 GMPSKEQRQTLMFSATFPEEIQKLAGEFLKSKYLFVAVGQVGGACRDVQQTILQVGQYSK 494

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 495 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 552

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 553 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSAIDEYVHRIGRTGRCGNTGRAVSFFD 612

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
            E D      + K++      +   L  +
Sbjct: 613 PESDSHLAQPLVKVLSDAQQDVPAWLEEI 641


>gi|18857967|ref|NP_572424.1| CG10777 [Drosophila melanogaster]
 gi|7290853|gb|AAF46295.1| CG10777 [Drosophila melanogaster]
 gi|16648356|gb|AAL25443.1| LD32873p [Drosophila melanogaster]
 gi|220947598|gb|ACL86342.1| CG10777-PB [synthetic construct]
          Length = 945

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 130/421 (30%), Positives = 213/421 (50%), Gaps = 22/421 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   V+  +   G+ KPT IQ +  P+ L   D+ GIAQTG+GKT +++LP +
Sbjct: 237 VSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAI 296

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQN 116
                +    R   P  L+L PTRELA Q+      YG           + GG     Q 
Sbjct: 297 VHIGNQPPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQA 356

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+RG +V+I TPGR++D        +     LV+DEADRMLDMGF P I+ I   +  
Sbjct: 357 RDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 416

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ +++SAT   E+Q ++ +FL +  +I + + + +A       V    +  K   L+ 
Sbjct: 417 DRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVC 476

Query: 237 QLLQSQDTMKNG------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
            L +      +G      I+F   K  V ++   +  +G++  +IHG+  Q  R  +L +
Sbjct: 477 LLNEISPIKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKD 536

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   +++A+D+A+RGLD+ D+ +V N+D PN +ENY+HRIGRTGR  + G A+T   
Sbjct: 537 FRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFT 596

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ---HNHARKNNPIPQKSTGFD 407
            ++ K    +  ++E+             P    +D+A+    +   + N     ++G D
Sbjct: 597 PDNAKQARELISVLEEAGQ---------TPSQALLDLARSMPSSGGYRGNKRWNNNSGGD 647

Query: 408 R 408
           R
Sbjct: 648 R 648


>gi|307822012|ref|ZP_07652244.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307736578|gb|EFO07423.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 444

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 143/427 (33%), Positives = 224/427 (52%), Gaps = 14/427 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L  +++ AV   G+ +PTP+Q+++IPL L+  D+   A+TG+GKTA+F+LP L 
Sbjct: 11  SFSSLSLDEQLLSAVKKLGFEQPTPVQLQSIPLALEHKDLLVSAETGSGKTAAFLLPALH 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L    +     R LIL PTRELA Q+  + ++  +  +L   L+ GG  F  Q   L R
Sbjct: 71  HLLTLPSGKSGVRALILTPTRELAQQIFKHCQQLTEFTDLKTGLITGGDDFRLQQNMLRR 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++I TPGR+L+   +     +N+E+L++DEADRMLDMGF   +  I +     RQTL
Sbjct: 131 NTEIVIATPGRVLELMEQEIPDFSNLEVLILDEADRMLDMGFSEDVLTIANSCNTQRQTL 190

Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT+T   + K+++  L+N + + +NT       IE   V       K    L   L 
Sbjct: 191 LFSATLTHFGVIKMADRVLKNHEVVALNTLHDGHRNIEQQIVLADDNDHK--LKLLIWLL 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +T    ++F N +     L   L  Q   V  +HG +DQ+ R +++  F+EG +++M+
Sbjct: 249 QNETYDKALVFTNSRIQADALRGPLRGQKLRVGVLHGEMDQKDRNRMMELFREGEVKIML 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARGLDI  +  V NFDVP    NYIHRIGRTGR    G    LV   +   +  I
Sbjct: 309 ATDLAARGLDIKGINLVINFDVPRNGINYIHRIGRTGRVDELGLTIALVKHTEWNLMSGI 368

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+ +++K    N             ++       K      K+TG  ++ +   +    +
Sbjct: 369 ERFLKQKFKHRNIK-----------ELEGKYKGPKKLKASGKATGGKKKIEPKKAAVEKV 417

Query: 421 PLKESEK 427
            +++ +K
Sbjct: 418 KIRDRDK 424


>gi|307174080|gb|EFN64767.1| ATP-dependent RNA helicase abstrakt [Camponotus floridanus]
          Length = 620

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 130/395 (32%), Positives = 199/395 (50%), Gaps = 16/395 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G +KPTPIQ++ IP VL   D+ GIA TG+GKT  FVLP++ 
Sbjct: 180 TFKEMKFHKGILYGLEQKGIIKPTPIQVQGIPTVLSGRDMIGIASTGSGKTLVFVLPIIE 239

Query: 62  IL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
                  +    +   P  LI+ P+RELA Q  D    Y  +            L IGG+
Sbjct: 240 FCLEQEIDMPFIKKEGPYGLIICPSRELAKQTYDIIRHYTNSLRQVDCPEIRCCLAIGGV 299

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
           P       + +G  +++ TPGR++D  ++  + ++    L +DEADRM+DMGF   ++ I
Sbjct: 300 PVSESLAIINKGVHIMVATPGRLMDMLHKKMVTLSVCRYLCMDEADRMIDMGFEEDVRTI 359

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM   +Q     F ++     V      A       +       +
Sbjct: 360 FSFFRGQRQTLLFSATMPKRIQN----FARSALVKPVTINVGRAGAASMNVIQEVEYVKQ 415

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K++V  +   L  +G    AIHG IDQ  R + +  
Sbjct: 416 EAKIVYLLECLQKTAPPVLIFAEKKRDVDAIHEYLLIKGVEAVAIHGGIDQEERSRSVEA 475

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+D+A++GLD  DV HV N+D+P+  ENY+HRIGRTGR+GR G A T + 
Sbjct: 476 FRGGRKDVLVATDVASKGLDFADVQHVINYDMPDDVENYVHRIGRTGRSGRTGIATTFIN 535

Query: 351 K-EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
           K  D   +  ++ L+ +    +   L  L    EK
Sbjct: 536 KANDESVLLDLKHLLMEAKQKVPPFLLELCSENEK 570


>gi|193573502|ref|XP_001943796.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Acyrthosiphon
           pisum]
          Length = 737

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 133/379 (35%), Positives = 205/379 (54%), Gaps = 4/379 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA       ++  +  + YV+PTPIQ + +P  L   D+ GIA+TG+GKT +F+ PM  
Sbjct: 243 SFAHFNFDDALMKIIRKSDYVQPTPIQSQAVPAALAGRDIIGIAKTGSGKTLAFIWPMLV 302

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +        P  LIL PTREL+ Q+    +K+GK YNL V    GG     Q+K L
Sbjct: 303 HIMDQPELKEGDGPVGLILAPTRELSQQIYVEAKKFGKIYNLRVVCCYGGGSKWEQSKAL 362

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA++++ TPGR++D        +  +  LV+DEADRM +MGF P +++I   V   RQ
Sbjct: 363 EGGAEIIVGTPGRVIDLVKMSATNLTRVTFLVLDEADRMFNMGFEPQVRSICDHVRPDRQ 422

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P RI            +   +      S KC  L   L
Sbjct: 423 TLLFSATFKKKIEKLARDILTDPIRIVQGD--VGEANTDVAQIMLVMPQSDKCQWLLDNL 480

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               +  + ++F  +K +   L  +L  + + V  +HG++DQ  R K+++ FK+  + +M
Sbjct: 481 VQFTSTGSILVFVTKKLDAEQLASTLSLKEYEVLLLHGDMDQAERNKVITKFKKQEVNIM 540

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+D+    + + HRIGRTGRAG  G AFTLV  +D +    
Sbjct: 541 VATDVAARGLDIAHIRTVVNYDIARDIDTHTHRIGRTGRAGEKGTAFTLVTPKDHEFAGH 600

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     +   L  L
Sbjct: 601 LVRSLEGVGQEVPKPLIDL 619


>gi|298489929|ref|YP_003720106.1| DEAD/DEAH box helicase domain-containing protein ['Nostoc azollae'
           0708]
 gi|298231847|gb|ADI62983.1| DEAD/DEAH box helicase domain protein ['Nostoc azollae' 0708]
          Length = 513

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 136/362 (37%), Positives = 206/362 (56%), Gaps = 5/362 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LG+S + V  +    +  PT IQ + IP +L   DV G +QTGTGKTA+F LPML
Sbjct: 3   LTFQELGISQERVEILEKLSFTTPTNIQTQAIPQLLAGRDVVGQSQTGTGKTAAFSLPML 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  +  V+     +L PTRELA QV D   ++  N  L V  + GG   + Q  +L+
Sbjct: 63  EKLDVSKKAVQAV---VLTPTRELAMQVHDAISQFMGNDGLRVLAIYGGQSIDRQMMQLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++D   RG L ++ ++  V+DEAD ML MGFI  +  I S  P  RQT
Sbjct: 120 RGVHVVVGTPGRVIDLLERGSLKLDQVKWFVLDEADEMLSMGFIDDVIRILSQAPTERQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++++   FL +P  + V  P +    I          ++K  A   Q + 
Sbjct: 180 ALFSATMPPSIRQLVNKFLNSPVTVTVEQPKAAPNKINQVAYLIPRHWTK--AKALQPIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  +  +IF   ++    L + L+  G SV   HG++ Q++R ++L+ F+   ++ +V
Sbjct: 238 EMEDPETALIFVRTRRTAAELTNQLQAAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  + HV NFD+P+  E Y+HRIGRTGRAG+ G A +LV   + +   A 
Sbjct: 298 ATDIAARGLDVDLLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQAF 357

Query: 361 EK 362
           E+
Sbjct: 358 ER 359


>gi|160915730|ref|ZP_02077938.1| hypothetical protein EUBDOL_01739 [Eubacterium dolichum DSM 3991]
 gi|158432206|gb|EDP10495.1| hypothetical protein EUBDOL_01739 [Eubacterium dolichum DSM 3991]
          Length = 572

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 130/371 (35%), Positives = 211/371 (56%), Gaps = 10/371 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L +S  ++ AV + GY + T IQ K IP +++  DV G + TGTGKTA+F +P + 
Sbjct: 3   TFNELHISEAILRAVSEMGYEQATEIQAKAIPYIMEGKDVLGRSNTGTGKTAAFGIPAIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
           +++    + +    LI+ PTREL  QVA    K+ K    + +  + GG P E Q + L+
Sbjct: 63  MVQP---QDKYANALIICPTRELVTQVAMELRKFSKYKEGVKIVPIYGGQPIERQIQLLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI--TSLVPFTR 178
           RG  +++ TPGRI+DH  R  L +++I ++++DEAD ML+MGF   I+ I        + 
Sbjct: 120 RGCGIVVGTPGRIMDHLRRRTLKLSDIRMVILDEADEMLNMGFKEDIEEILSLMPSERSY 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT   E+ ++++ F  +P  +E+ +   T +T+E  +               ++
Sbjct: 180 QTILFSATWPSEIMRIAKEFQNDPVTVEIKSAQRTIDTVEQLYYEVPRGKKANA---LRV 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +    +  +IF N KK V  L   L K     CA+HG++ Q  R +++  F+ G++ +
Sbjct: 237 LLNHYDPELCMIFANTKKMVDELQGELNKHDIKACALHGDMKQEFRSRVMEQFRSGSMPI 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHI 357
           ++A+D+AARG+D+ DV  V NFD+P   E YIHRIGRTGRAG+ G A TL++       +
Sbjct: 297 LIATDVAARGIDVDDVDLVINFDIPQDNEYYIHRIGRTGRAGKKGLAITLISGGRQRSEL 356

Query: 358 DAIEKLIEKKV 368
             I +  +  +
Sbjct: 357 KNIMRYTKTNI 367


>gi|42524815|ref|NP_970195.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39577025|emb|CAE78254.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 549

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 135/411 (32%), Positives = 204/411 (49%), Gaps = 28/411 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L  +++ A+    Y   TPIQ + IP VL   DV G+AQTGTGKTA+FV+P++
Sbjct: 1   MKFSELNLDSQLLSAIQKLNYDDCTPIQEQAIPPVLDGKDVAGLAQTGTGKTAAFVIPVM 60

Query: 61  TI------------------LEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYN 100
                               +EK   +   P+    IL PTRELA QV DN  K   +  
Sbjct: 61  ERILRARPIQGEVTEEQKALIEKRAYKDWKPQNFVLILVPTRELAEQVQDNINKLSVDSG 120

Query: 101 LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160
           L    + GG  ++ Q + L+ G + ++ TPGR++D +    + +  +  +V DEADRM D
Sbjct: 121 LRGFAIYGGTGYDKQKEALKNGVEFIVATPGRLIDLYKEHLVDLKQVRAIVFDEADRMFD 180

Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
           MGF   ++ I   VP  RQ L+FSAT+  ++      F   P  I ++   + A+ +   
Sbjct: 181 MGFKDDMKYILQRVPRERQLLVFSATLNFDVLNTIYQFGSEPVEINISRDQAKADNV--- 237

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC-AIHGNI 279
               +   S +       L      K  IIF N K +V  +   L + G           
Sbjct: 238 KDQIFHVGSDEKPQHLLSLLKVHNPKQAIIFTNFKMSVERIAKFLVENGVPAMAISSLLT 297

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
             +    I     E  + ++VA+D+AARGLDI  V  V N+++P  +E+Y+HRIGRTGRA
Sbjct: 298 QAQRNRVIEQFKAENDMNVLVATDVAARGLDIKGVDMVVNYELPMDSESYVHRIGRTGRA 357

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVD--WLNGD--LSSLNPPLEKID 386
           G  G+AF+LV  +DI+ +  IE  ++ K++  +L  D  L    P     D
Sbjct: 358 GTTGQAFSLVGDKDIESLGRIEDYLKHKIEIGYLENDQLLKDFKPMTSSYD 408


>gi|172056876|ref|YP_001813336.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171989397|gb|ACB60319.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 450

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 134/443 (30%), Positives = 226/443 (51%), Gaps = 18/443 (4%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F+   L P VV A+ DA   KPT IQ + IP  L+  D+ G +QTGTGKT SF+LP+
Sbjct: 1   MNGFSHFDLHPFVVEALEDARIKKPTDIQSRIIPAALKGRDIIGQSQTGTGKTLSFLLPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKY--GKNYNLTVALLIGGIPFEAQNK 117
           +  +      ++     I+ PTRELA Q+ +  +     +   +  +L+ GG+  E Q  
Sbjct: 61  VQNVNPELQEMQAI---IVAPTRELAWQIHEELKSILVKQPDYIKTSLITGGMDRERQIG 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +++    ++I TPGRILD F    L  + ++  +IDEAD+MLDMGF+P +  I   +P  
Sbjct: 118 RVKVSPQIVIGTPGRILDLFKEQALKPHFVKHYIIDEADQMLDMGFLPEVDRIAQALPEK 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+ ++LQ   + ++ NP+   V+    TA+ I H  V    +      L   
Sbjct: 178 LQMMVFSATIPEKLQPFLKKYMNNPRYAHVDPKQQTAKKIVHHTVPVKHRDRSDLTLKLA 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              +       ++F N K   + L     + G +V ++HG++  R R + +    E   Q
Sbjct: 238 KALNPYIC---LVFTNTKTEAIELEALFLEAGLNVGSLHGDLPARRRKQAIKEINEAKYQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++ +DLAARG+DI  V HV N  +P   + Y+HR+GRTGR  + G A+TL    +   I
Sbjct: 295 YVIVTDLAARGIDISGVSHVINHGIPKDLDFYVHRVGRTGRVDQDGLAYTLFEDHENGSI 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR------KNNPIPQKSTGFDRRKK 411
           + +E   ++ ++++N D+ S      K       H +       ++ +  ++    +R K
Sbjct: 355 NRLE---DRGIEFINVDVKSGQVSEVKERRRAKPHMKTAVSKTAHSRLSGEAAKAKKRVK 411

Query: 412 NYSSQKSHIPLKESEKISKLQQD 434
               +K    LKE+ K  ++++ 
Sbjct: 412 PGYKKKHQYKLKETAKRERIKEQ 434


>gi|323305584|gb|EGA59325.1| Fal1p [Saccharomyces cerevisiae FostersB]
          Length = 408

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 105/377 (27%), Positives = 189/377 (50%), Gaps = 8/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+  P+ IQ + I  ++   DV   AQ+GTGKTA+F + +L 
Sbjct: 24  TFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    R +  + LIL PTRELA+Q+    +  G   N+    + GG   +   KK+++
Sbjct: 84  AIDL---RKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQK 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM---LDMGFIPYIQNITSLVPFTR 178
                +      +    + ++L      +++ +         +GF   I +I + +P   
Sbjct: 141 HGCQAVSGTPGRVLDMIKRQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNC 200

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++ SATM  ++ +V+  F+ +P +I V     + E I+   V    +  K   L    
Sbjct: 201 QVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCD-- 258

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +    T+   +IFCN KK V  L   L +  F+V ++HG++ Q  R K++++F+ G  ++
Sbjct: 259 IYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRV 318

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++++D+  RG+D+  V  V N+D+P   E YIHRIGR+GR GR G A   + K D+  + 
Sbjct: 319 LISTDVWXRGIDVQQVSLVINYDLPEIIEXYIHRIGRSGRFGRKGVAINFITKADLAKLR 378

Query: 359 AIEKLIEKKVDWLNGDL 375
            IEK    K++ +  + 
Sbjct: 379 EIEKFYSIKINPMPANF 395


>gi|116693760|ref|YP_839293.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|116651760|gb|ABK12400.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           HI2424]
          Length = 507

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 152/370 (41%), Positives = 220/370 (59%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  +    Y  PTP+Q K IP+VL   DV   AQTGTGKTA F LP+L
Sbjct: 24  MSFASLGLIEPLLRNLQGLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLL 83

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +    V   R    +L PTRELA QV  +F +YGK  +L      GG+    Q  K
Sbjct: 84  QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMK 143

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 144 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKR 203

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++K++   L++P  I V+ P++TA  I+   V    +      +    
Sbjct: 204 QTLLFSATFSDEIRKMAAGILRSPVDISVSPPNATASKIKQWVVPVDKRNKPDLFMHL-- 261

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +Q+  ++ ++F   +  V  L   LEK G++V  IHG+  Q +R++ L  FK G +Q+
Sbjct: 262 -VAQNRWEHALVFVKTRNGVDYLALMLEKTGYAVDTIHGDKPQPARLRALERFKTGEVQM 320

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 321 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 380

Query: 359 AIEKLIEKKV 368
           AIE LI + +
Sbjct: 381 AIEALIRQTL 390


>gi|329767883|ref|ZP_08259397.1| hypothetical protein HMPREF0428_01094 [Gemella haemolysans M341]
 gi|328838671|gb|EGF88270.1| hypothetical protein HMPREF0428_01094 [Gemella haemolysans M341]
          Length = 486

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 133/391 (34%), Positives = 216/391 (55%), Gaps = 13/391 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+S + V ++ +  ++ PT IQ +TIP VL   D+   AQTG+GKT +F +P++ 
Sbjct: 3   TFEELGVSQETVQSLRNMNFISPTGIQTETIPYVLSGIDILAQAQTGSGKTGAFGIPLVD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +     +    ++LIL PTRELA QV +      +   L V+++ GG   E Q + L++
Sbjct: 63  TVR----KSDQLQSLILAPTRELAQQVGEQLRLMSRAKGLKVSIVFGGTSIERQIQDLKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++DH NR  + ++++  LV+DEAD ML+MGFI  ++ I S +    QTL
Sbjct: 119 RPQIIVGTPGRVIDHINRRTIKLDSLTHLVLDEADEMLNMGFIEDVRFILSKITSRHQTL 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   + ++S++F+++ K I      S  +               +          
Sbjct: 179 LFSATMPKTIMELSKDFMKDYKLI---KTISDEDLKPDITEYATIARENEKLETLIGFLD 235

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K+ V  L  +L  +G+    +HG+I Q  R++IL  FK  ++Q++VA
Sbjct: 236 VQNPNLAIVFGRTKRRVDELSSALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQILVA 295

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI DV HV+NFD+P   E+Y HRIGRTGRAG+ G A T +   ++ ++  IE
Sbjct: 296 TDVAARGIDISDVTHVYNFDIPQDVESYTHRIGRTGRAGKSGVAITFLNPVEMPYLKDIE 355

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
               +++  L            ++  A+HN 
Sbjct: 356 NSRGERMKMLRPYSQD------EVKKARHNR 380


>gi|320533118|ref|ZP_08033850.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134690|gb|EFW26906.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 471

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 135/411 (32%), Positives = 212/411 (51%), Gaps = 19/411 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  + P++  A+   G   P PIQ  T+P+ L+  D+ G A+TGTGKT  F +P+L 
Sbjct: 71  TFADFDVEPEICEALSAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLM 130

Query: 62  ILEKGRARVRM-------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                             P+ LI+ PTRELA QVA+          + +  + GG  +E 
Sbjct: 131 DTLGPGEEGWDEDPASGSPQALIILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEP 190

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERGA+V++ TPGR++D   RG L + ++  +V+DEAD MLD+GF+P ++ I +  
Sbjct: 191 QIEDLERGAEVVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILART 250

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              R T+LFSATM   +  ++  ++  P  I    P     T++      Y  +S     
Sbjct: 251 RTDRHTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQTVQQVVYRTHSMNKVE 310

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +   +     IIF   K+    +   L  +GF+  A+HG++ Q +R + L  F+  
Sbjct: 311 VVSRILQAEGRGRTIIFARTKRTAARVADDLRARGFATAALHGDLGQGAREQALRAFRNS 370

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+  P   + Y+HRIGRTGRAG  G A T V  +D+
Sbjct: 371 KVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFVDWDDV 430

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
                I K +   ++           P+E    ++H  +  +  IP+K TG
Sbjct: 431 PRWRIIAKALGLPIEE----------PVETYHTSEHLFS--DLSIPEKVTG 469


>gi|167584411|ref|ZP_02376799.1| Putative ATP-dependent RNA helicase, rhlE [Burkholderia ubonensis
           Bu]
          Length = 481

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 165/480 (34%), Positives = 252/480 (52%), Gaps = 29/480 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  V D  Y  PTP+Q+K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIDPLLRNVQDLDYQTPTPVQVKAIPAVLSGKDVMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +    V   R    +L PTRELA QV  +F  YGK  +L +    GG+    Q  K
Sbjct: 61  QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIDYGKGLDLRLLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +D+++ ++   L+ P +I V+ P++TA  I+   V    +      +    
Sbjct: 181 QTLLFSATFSDDIRAMAAGILRGPVKISVSPPNATAGKIKQWVVPVDKRNKPDLFMHL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +++  K+ ++F   +K V  L   L++ G++V  IHG+  Q +R++ L  FK G + +
Sbjct: 239 -VAENDWKHALVFVKTRKGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVHM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  +  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDINGLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPL----------------EKIDIAQHNHARKNNPIP 400
           AIE LI + +  +   G  +    P                  K+ +A     +     P
Sbjct: 358 AIEALIRQTLPREEEPGFEAEHRVPQTGATGQIIKKPKKPKKPKVPLAASGAMQVLGKKP 417

Query: 401 QKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
           +  +G ++RK   ++Q++    K +   S     +Q+  +         P     K  GK
Sbjct: 418 RPQSGENKRK--PAAQRAVAAGKGTSSSSGNPFSVQKPRSKPASK----PTAGSRKPAGK 471


>gi|294885690|ref|XP_002771414.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239874995|gb|EER03230.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 453

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 102/376 (27%), Positives = 171/376 (45%), Gaps = 4/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF D  L  +++  + + G+ KP+PIQ ++IP  L   ++   A+ GTGKTASF++PML 
Sbjct: 78  DFEDYFLKRELLMGIFEKGFEKPSPIQEESIPPALAGKNILARAKNGTGKTASFLIPMLE 137

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +            L+L PTRELA Q +   ++ GK  +  V +  GG        +L  
Sbjct: 138 KVNTDITDGIQG--LVLVPTRELALQTSAVAKELGKYMDAQVMVTTGGTSLRDDIMRLYN 195

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD  N+G   +++   + + +    L       +           +  
Sbjct: 196 TVHILVGTPGRVLDLTNKGVCSLSDTCTMCVMDEADKLLSPEFQPVVEELVRFLPKEKRQ 255

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +   + T  +  +   F        V        T++           ++       L S
Sbjct: 256 ILMFSATFPVTILD--FKNKYMPDAVEINLMEELTLKGVTQFYAFVEERQKVHCLNTLFS 313

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T+   IIFCN    V  L   + + GFS   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 314 KLTINQAIIFCNSVNRVELLAKKITELGFSCFYIHARMYQSHRNRVFHDFRNGACRCLVS 373

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI +V  V NFD P  +E Y+HRIGR+GR G  G A  ++  +D  ++  IE
Sbjct: 374 SDLFTRGIDIENVNVVINFDFPKNSETYLHRIGRSGRFGHLGIAINMLTYDDRFNLYRIE 433

Query: 362 KLIEKKVDWLNGDLSS 377
             +  ++  +   +  
Sbjct: 434 HELGTEIKPIPSHIDE 449


>gi|294880791|ref|XP_002769153.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239872304|gb|EER01871.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 449

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 102/376 (27%), Positives = 171/376 (45%), Gaps = 4/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF D  L  +++  + + G+ KP+PIQ ++IP  L   ++   A+ GTGKTASF++PML 
Sbjct: 74  DFEDYFLKRELLMGIFEKGFEKPSPIQEESIPPALAGKNILARAKNGTGKTASFLIPMLE 133

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +            L+L PTRELA Q +   ++ GK  +  V +  GG        +L  
Sbjct: 134 KVNTDITDGIQG--LVLVPTRELALQTSAVAKELGKYMDAQVMVTTGGTSLRDDIMRLYN 191

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD  N+G   +++   + + +    L       +           +  
Sbjct: 192 TVHILVGTPGRVLDLTNKGVCSLSDTCTMCVMDEADKLLSPEFQPVVEELVRFLPKEKRQ 251

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +   + T  +  +   F        V        T++           ++       L S
Sbjct: 252 ILMFSATFPVTILD--FKNKYMPDAVEINLMEELTLKGVTQFYAFVEERQKVHCLNTLFS 309

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T+   IIFCN    V  L   + + GFS   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 310 KLTINQAIIFCNSVNRVELLAKKITELGFSCFYIHARMYQSHRNRVFHDFRNGACRCLVS 369

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI +V  V NFD P  +E Y+HRIGR+GR G  G A  ++  +D  ++  IE
Sbjct: 370 SDLFTRGIDIENVNVVINFDFPKNSETYLHRIGRSGRFGHLGIAINMLTYDDRFNLYRIE 429

Query: 362 KLIEKKVDWLNGDLSS 377
             +  ++  +   +  
Sbjct: 430 HELGTEIKPIPSHIDE 445


>gi|254507177|ref|ZP_05119314.1| superfamily II DNA and RNA helicase [Vibrio parahaemolyticus 16]
 gi|219549887|gb|EED26875.1| superfamily II DNA and RNA helicase [Vibrio parahaemolyticus 16]
          Length = 388

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 152/373 (40%), Positives = 216/373 (57%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +  A+   GY KPT IQ K IP +LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MPFAKLGLSQPLTQAIQSLGYSKPTTIQTKAIPAILQGDDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L KG   R +  R LIL PTRELA Q+      YG+N +LT   + GG+  + Q + L
Sbjct: 61  EKLAKGETQRKKRVRALILTPTRELAQQIEQKVRDYGQNLSLTSLAMYGGVDEKPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+LI TPGR+LD + +  +    IE+LV+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IEGVDILIATPGRLLDMYGKRAVHFEEIEVLVMDEADRMLDMGFIDDINKILDRLPTDIQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++++++ +++  + +P  I +    ++ + I             K + L   +
Sbjct: 181 HLLFSATLSNKVRDLAKTAVHDPFEISIAANQASKKNI---EQWLITVDKDKKSALLSHM 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++     +IF   K     L   LEK+G    A H    Q  R K+L++FK G I+ M
Sbjct: 238 IKENNWDQALIFIETKHGAAKLASQLEKRGIEAEAFHSGRSQAVRSKLLADFKAGKIKYM 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ + ARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 IATGVGARGIDIEGLTRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFKNLCM 357

Query: 360 IE----KLIEKKV 368
           IE     LIE++V
Sbjct: 358 IEARLGHLIERRV 370


>gi|241172335|ref|XP_002410726.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215494955|gb|EEC04596.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 658

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 211/386 (54%), Gaps = 3/386 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LG    ++ A+  A Y +P+PIQ + +P+ +   D+ GIA+TG+GKTA+F+ PMLT
Sbjct: 183 SFAHLGFDEPMLRAIRKAEYTQPSPIQAQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLT 242

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  LIL PTRELA Q+    +++GK Y +      GG     Q+K L
Sbjct: 243 HIMDQRELVEGEGPIGLILAPTRELAQQIYLEAKRFGKVYGVGAICCFGGGSKWEQSKAL 302

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++ TPGR++D        +  +  LV+DEADRM DMGF P +++I   V   RQ
Sbjct: 303 QEGAEIVVATPGRMIDLIKMKATNLERVTFLVLDEADRMFDMGFEPQVRSICDHVRPDRQ 362

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT   ++++++ + L +P ++         E +    +   +             
Sbjct: 363 TLMFSATFKRKVERLARDVLTDPVKVVQGDVGEANEDVTQIVLVVPSVPPTTKWNWLTNH 422

Query: 240 -QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                ++ + +IF  +K N   L  +L+ +  +V  +HG++DQ  R K++++FK+    +
Sbjct: 423 LVEFTSVGSVLIFVTKKANAEELAANLKTKDHNVALLHGDMDQNDRTKVIASFKKKDFPI 482

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIP V  V N+D+    + + HR+GRTGRAG  G A+TL+  ++ +   
Sbjct: 483 LVATDVAARGLDIPHVRTVVNYDIARDIDTHTHRVGRTGRAGEKGVAYTLITDKEKEFAG 542

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
            + + +E     +   L  L    +K
Sbjct: 543 HLVRNLEGANQGVPQSLMDLAMQAKK 568


>gi|327262891|ref|XP_003216257.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like [Anolis
           carolinensis]
          Length = 1021

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 125/389 (32%), Positives = 199/389 (51%), Gaps = 13/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   ++  +  AGY K TP+Q  +IP+VL   D+   AQTG+GKTA+F++P+L
Sbjct: 214 LTFDEANLCQILMENIARAGYFKLTPVQKHSIPIVLAGRDLMACAQTGSGKTAAFLIPIL 273

Query: 61  TIL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             +             + P  +I+ PTREL  Q+     K+     +   ++ GGI    
Sbjct: 274 AHMLRDGITATHFKEQQEPECIIVAPTRELINQIFLESRKFSYGTCVRPVVIYGGIQMGH 333

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
              ++ +G ++L  TPGR+LD  NRGK+ +  ++ LV+DEADRMLDMGF P ++      
Sbjct: 334 TIHQIMQGCNILCATPGRLLDIINRGKIGLTKLKYLVLDEADRMLDMGFGPDMKKLISSP 393

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL+      V      A +     +    QY K
Sbjct: 394 GMPSKDQRQTLMFSATFPEEIQRLAGEFLKVDYLFVVVGQVGGACSDVEQTILQVNQYDK 453

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +       + +    +  ++F   KK    +   L ++     +IHG+ +QR R + L  
Sbjct: 454 RE--KLLEILNAIGKERTMVFVETKKKADFIATFLCQEYIPTTSIHGDREQREREEALQC 511

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  GKA +   
Sbjct: 512 FRSGKCPVLVATSVAARGLDIENVQHVINFDLPSAIDEYVHRIGRTGRCGNTGKAISFFD 571

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
              D      + K++      +   L  +
Sbjct: 572 PRSDSSIAQPLVKVLADAQQEVPAWLEEI 600


>gi|190346939|gb|EDK39127.2| hypothetical protein PGUG_03226 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 676

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 116/437 (26%), Positives = 197/437 (45%), Gaps = 14/437 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F DL     L+ K++  ++ +GY +PT IQ + IP   +  D+   A TG+GKT ++++
Sbjct: 242 SFEDLIARCNLNRKLLANLIASGYSEPTAIQCEAIPASAEGRDLIACAPTGSGKTLAYLI 301

Query: 58  PMLTI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           PM    +   + +    R +++ PT ELA Q+        +  NL V LL   +  +  +
Sbjct: 302 PMAQALISSPKTKNYGIRGVVIAPTNELAIQIYQTLAPMCRGSNLNVTLLSKQVASKISS 361

Query: 117 KKLE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +     DVLICTP R++D   + ++ ++ +E LVIDEAD++ D GF+     I S   
Sbjct: 362 SIISANKFDVLICTPLRLIDLVKKEQVDLSKVEHLVIDEADKLFDHGFVEQTDEILSHCT 421

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              +     +       +   N +   +   +      A T     +        K   +
Sbjct: 422 LPTRRTSMFSATIPSGVEEMANSIMKDQIRIIVGHKEGASTSIDQKLVFTGNEEGKLLAI 481

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q++Q  +     IIF         L H L     +V  IH     + R + +  FK G 
Sbjct: 482 RQMVQQGEFKPPIIIFLQSIPRAKALFHELIYDKLNVEVIHAERTPKQREEAIRRFKNGD 541

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +++ +D+ ARG+D   V  V N+DVP  ++ Y+HRIGRTGR G+ GKA T   KED  
Sbjct: 542 AWVLITTDVLARGVDFKGVNLVINYDVPQTSQAYVHRIGRTGRGGKEGKAVTFFTKEDKL 601

Query: 356 HIDAIEKLIEKK------VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            I  +  ++++        +W+   +  L    EK  I QH   RK      +     R+
Sbjct: 602 AIKPVLNVMKQSGCHEGYSEWMES-MEKLTKK-EKQQIKQHEIKRKKISTVPQVVSKKRK 659

Query: 410 KKNYSSQKSHIPLKESE 426
           ++    + S    +E++
Sbjct: 660 QRKEMIEASKRRKEETK 676


>gi|167752241|ref|ZP_02424368.1| hypothetical protein ALIPUT_00483 [Alistipes putredinis DSM 17216]
 gi|167660482|gb|EDS04612.1| hypothetical protein ALIPUT_00483 [Alistipes putredinis DSM 17216]
          Length = 650

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 128/402 (31%), Positives = 216/402 (53%), Gaps = 20/402 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60
           +F  LGLS  ++ A+   G+  P+ IQ  TIP +L    D+   AQTGTGKTA+F LP++
Sbjct: 6   EFKALGLSDDILTAIAKKGFETPSAIQSLTIPHLLTTDKDIIAQAQTGTGKTAAFGLPII 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L    +R  +P+ ++L PT    A            ++L++A + GG     Q ++L+
Sbjct: 66  QML---TSRRNIPQAIVLVPT-RELALQVTQELISFNTHDLSIAPIYGGASMTEQLRRLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TPGRILDH  RG L ++ I  LV+DEAD ML+MGFI  I+ I   +   ++ 
Sbjct: 122 KGIDIVVGTPGRILDHIRRGTLDLSAIAYLVLDEADEMLNMGFIEDIEEIMHAMTGPKRV 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM D +  ++ N++  P  ++V +   T +     +                 + 
Sbjct: 182 LLFSATMPDRIAALARNYMHEPDLLKVESQHVTTDLTNQIYFEVREGDK---FDALTRII 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +    GI+F   +    ++   L ++G++   +HG+I Q  R KIL  FK+  + ++V
Sbjct: 239 DVEPEFYGIVFSRTRTGADDIVAKLLERGYAAEVLHGDISQAQREKILGKFKKKQVNILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HV N+ +P  +++Y+HRIGRTGRAG  G A T ++  +++    +
Sbjct: 299 ATDVAARGIDVSNLTHVINYSLPQDSDSYVHRIGRTGRAGNQGTAITFISPSEMRKFGFL 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           ++ I+  +             LE++       A K N I + 
Sbjct: 359 KRTIKADI------------KLEQLPTPADIIATKRNKIKED 388


>gi|167394408|ref|XP_001733535.1| pre-mRNA-processing ATP-dependent RNA helicase prp11 [Entamoeba
           dispar SAW760]
 gi|165894690|gb|EDR22596.1| pre-mRNA-processing ATP-dependent RNA helicase prp11, putative
           [Entamoeba dispar SAW760]
          Length = 636

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 115/369 (31%), Positives = 191/369 (51%), Gaps = 7/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +++ G++P  +  +    Y KP+P+Q + IP+++  +D    A+TG+GKT ++ +P++ 
Sbjct: 55  TWSECGINPITMDVIKALKYEKPSPVQRQAIPVIMSGYDAIVCAKTGSGKTLAYTIPLIK 114

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R   +   P  ++  P RELA Q+     K+GK  N+    + GG     Q   L
Sbjct: 115 HVMAQRPLSKGEGPIGIVFAPIRELAEQINTEINKFGKYLNIRSVAVFGGTGISNQIGAL 174

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RG ++++CTPGR++D     N     +  +  +V+DEADRM DMGF P I+ I   +  
Sbjct: 175 KRGTEIVVCTPGRMIDILVTNNGRITNLRRVTFVVLDEADRMFDMGFGPQIKRIIEGIRP 234

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +Q ++FSAT    +++ +  FL+ P  I      S         V       K   L+ 
Sbjct: 235 DKQIVMFSATFPISVEQHAREFLKKPIEIICGG-RSQVSNTIEQIVEVIEIKKKIARLIS 293

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ-RSRMKILSNFKEGT 295
            +L+  +     IIF   +KN   L  +L ++  +   +HG IDQ   +  I        
Sbjct: 294 IVLEQNNKGGRIIIFTETQKNCDELYQNLMERNINCLLLHGGIDQIDRQNTIQEFKSGIG 353

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +++ + L ARGLDI  +  V N+D PN  E+Y+HR+GRTGRAG+ GKA T + KE+ K
Sbjct: 354 RTILITTSLCARGLDIKGLELVINYDCPNHLEDYVHRVGRTGRAGKRGKAITFITKEEEK 413

Query: 356 HIDAIEKLI 364
           + + I K +
Sbjct: 414 YSEDIVKAL 422


>gi|71065503|ref|YP_264230.1| putative ATP-dependent RNA helicase [Psychrobacter arcticus 273-4]
 gi|71038488|gb|AAZ18796.1| putative ATP-dependent RNA helicase [Psychrobacter arcticus 273-4]
          Length = 396

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 128/373 (34%), Positives = 201/373 (53%), Gaps = 9/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
            F DL LS   + AV D G+ + TPIQ K +P  L   D  G AQTGTGKTA+F+L ++ 
Sbjct: 18  TFTDLPLSAATLRAVSDLGFTELTPIQAKILPHTLANQDAIGQAQTGTGKTATFLLTIME 77

Query: 61  -----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                         +  PR +++ PTRELA Q+ D+     K  +L    ++GG  +E Q
Sbjct: 78  ALLKRPFAADEERHLGEPRAVVMAPTRELAQQIFDDCIALNKYTSLHSVCIMGGTNYETQ 137

Query: 116 NKK-LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +   +  D+LI TPGR++D  ++G + ++ +E+LV+DEADRMLDMGFIP I+ +   +
Sbjct: 138 QHELERQYVDILIATPGRLIDLMHKGMVYLDRVEVLVLDEADRMLDMGFIPDIKRLVGRM 197

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P          + T   Q V     +              +T E      Y     +   
Sbjct: 198 PPNTDRQSLLFSAT-FNQDVMGLAYRWLHEPAFVEIEPEHKTSELVDQHFYLLTEDQKLE 256

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             + + +  T++  IIF N+K  V  L H L +    V  + G++ Q+ R K L  FK+G
Sbjct: 257 AVERIITDTTVEKVIIFANRKDQVKRLYHKLRQGHKIV-MLSGDVIQQKREKYLQRFKDG 315

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+A RG+ + DV HV N+ +P++ ++Y+HRIGRTGRAG+ G + + V+++D 
Sbjct: 316 HASVLVATDVAGRGIHVDDVSHVINYTLPDQPDDYVHRIGRTGRAGKTGISISFVSEDDA 375

Query: 355 KHIDAIEKLIEKK 367
            +I A+EK ++ K
Sbjct: 376 FNIPALEKHLDTK 388


>gi|260799746|ref|XP_002594845.1| hypothetical protein BRAFLDRAFT_124435 [Branchiostoma floridae]
 gi|229280082|gb|EEN50856.1| hypothetical protein BRAFLDRAFT_124435 [Branchiostoma floridae]
          Length = 724

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 117/441 (26%), Positives = 202/441 (45%), Gaps = 13/441 (2%)

Query: 11  KVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV 70
           +++  +   GY +PTPIQ++ IPL+LQR ++   A TG+GKTA+F+LP+L  L +   R 
Sbjct: 220 QILTNLQGLGYEEPTPIQMQAIPLMLQRREILACAPTGSGKTAAFILPILHHLREP--RR 277

Query: 71  RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL---LIGGIPFEAQNKKLERGADVLI 127
           +  R +++ PTRELA Q    F++ G+                     N   +    V  
Sbjct: 278 QGFRAVVVSPTRELAKQTFTWFQRLGEGRGFRTYYIEKPAQAAKKFGPNSAKKFDILVTT 337

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----ITSLVPFTRQTLLF 183
                 +   +   + ++++E LV+DE+D++ + G   +         +      +  +F
Sbjct: 338 PNRLVYMLKQDPPIVSLHSVEWLVVDESDKLFEEGKQGFRDQLGVIYQACDSSHVRRAMF 397

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT   ++++  +  L N   + +   +S  +T+E   +   ++  K  A+ + + +   
Sbjct: 398 SATFAYDVEQWCKVNLDNVVTVSIGARNSAVDTVEQQLLFVGSESGKLLAMRELVRKGLT 457

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
                +IF   K+    L H L   G +V  IH +  Q  R   +  F+ G I +++ ++
Sbjct: 458 PP--VLIFVQSKERAKELFHELIYDGINVDVIHADRTQTQRDNTVKCFRTGKIWVLICTE 515

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           L  RG+D   V  V N+D P  A +YIHRIGRTGRAGR GKA T   ++DI H+ +I  +
Sbjct: 516 LMGRGIDFKGVNLVINYDFPTSAVSYIHRIGRTGRAGRPGKALTFFTEDDIVHLRSIANV 575

Query: 364 IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR--KKNYSSQKSHIP 421
           + +    +   +  L     K        A K   I      F  +  KK    +KS   
Sbjct: 576 MREAGCEVPEYMLELKKANRKERRFLEKRAPKRKSISTTPKMFVDKAMKKRKMIEKSKKM 635

Query: 422 LKESEKISKLQQDIQENDADS 442
             ++ K   +Q D    +AD 
Sbjct: 636 QGKTRKHEAVQSDSSTANADD 656


>gi|156085513|ref|XP_001610166.1| ATP-dependent RNA helicase [Babesia bovis T2Bo]
 gi|154797418|gb|EDO06598.1| ATP-dependent RNA helicase, putative [Babesia bovis]
          Length = 433

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 119/381 (31%), Positives = 191/381 (50%), Gaps = 10/381 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L  HD+   A+ GTGKTA+FV+P+L 
Sbjct: 61  EFEDYFLKRELLMGIFEKGFEKPSPIQEESIPVALAGHDILARAKNGTGKTAAFVIPLLE 120

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L          + LIL PTRELA Q +   ++ GK  ++   +  GG        +L +
Sbjct: 121 KLNTSN---NHIQGLILLPTRELALQTSAVVKELGKYLDVQCMVSTGGTSLRNDIVRLYK 177

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL  TPGRILD  N+    ++   ++++DEAD+ML   F P I+ +   +P  +Q +
Sbjct: 178 PVHVLCGTPGRILDLTNKNVADLSKCHVVILDEADKMLSAEFQPIIEALLRFLPTEKQMI 237

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    +QK    F ++              T++           ++       L S
Sbjct: 238 LYSATFPMSVQK----FKESYLPNAHEINLMDELTLKGITQYYAYVEERQKIHCLSTLFS 293

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + GFS   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 294 RLQINQAIIFCNSVSRVELLAKKITELGFSCFYIHARMLQAHRNRVFHDFRNGACRCLVS 353

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+D   V  V NFD P  +  Y+HRIGR+GR G  G A  LV   D + +  IE
Sbjct: 354 SDLFTRGIDFRFVNVVINFDFPKTSATYLHRIGRSGRFGHLGLAINLVTLADKEALFRIE 413

Query: 362 KLIEKKVDWLNGDLSSLNPPL 382
           + +  ++       ++++P L
Sbjct: 414 EELGTEIKATP---ATIDPAL 431


>gi|146419062|ref|XP_001485496.1| hypothetical protein PGUG_03226 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 676

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 116/437 (26%), Positives = 197/437 (45%), Gaps = 14/437 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F DL     L+ K++  ++ +GY +PT IQ + IP   +  D+   A TG+GKT ++++
Sbjct: 242 SFEDLIARCNLNRKLLANLIASGYSEPTAIQCEAIPASAEGRDLIACAPTGSGKTLAYLI 301

Query: 58  PMLTI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           PM    +   + +    R +++ PT ELA Q+        +  NL V LL   +  +  +
Sbjct: 302 PMAQALISSPKTKNYGIRGVVIAPTNELAIQIYQTLAPMCRGSNLNVTLLSKQVASKISS 361

Query: 117 KKLE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +     DVLICTP R++D   + ++ ++ +E LVIDEAD++ D GF+     I S   
Sbjct: 362 SIISANKFDVLICTPLRLIDLVKKEQVDLSKVEHLVIDEADKLFDHGFVEQTDEILSHCT 421

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              +     +       +   N +   +   +      A T     +        K   +
Sbjct: 422 LPTRRTSMFSATIPSGVEEMANSIMKDQIRIIVGHKEGASTSIDQKLVFTGNEEGKLLAI 481

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q++Q  +     IIF         L H L     +V  IH     + R + +  FK G 
Sbjct: 482 RQMVQQGEFKPPIIIFLQSIPRAKALFHELIYDKLNVEVIHAERTPKQREEAIRRFKNGD 541

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +++ +D+ ARG+D   V  V N+DVP  ++ Y+HRIGRTGR G+ GKA T   KED  
Sbjct: 542 AWVLITTDVLARGVDFKGVNLVINYDVPQTSQAYVHRIGRTGRGGKEGKAVTFFTKEDKL 601

Query: 356 HIDAIEKLIEKK------VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            I  +  ++++        +W+   +  L    EK  I QH   RK      +     R+
Sbjct: 602 AIKPVLNVMKQSGCHEGYSEWMES-MEKLTKK-EKQQIKQHEIKRKKISTVPQVVSKKRK 659

Query: 410 KKNYSSQKSHIPLKESE 426
           ++    + S    +E++
Sbjct: 660 QRKEMIEASKRRKEETK 676


>gi|115361005|ref|YP_778142.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115286333|gb|ABI91808.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
          Length = 511

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 149/370 (40%), Positives = 217/370 (58%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  + D  Y  PTP+Q+K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 35  MSFASLGLIDPLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALPLL 94

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +    V   R    +L PTRELA QV  +F  YGK  +L      GG+    Q  K
Sbjct: 95  QRLVQQGPAVSSNRARVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMK 154

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + +E LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 155 LRKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPVQR 214

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT TD+++ ++ + L++P  I V+ P+ T   I+   V    +      +    
Sbjct: 215 QTLLFSATFTDDIRTMAASILRSPVNISVSPPNVTGSKIKQWVVTVDKRNKPDLFMHL-- 272

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +++   + ++F   +  V  L   L++ G++V  IHG+  Q +R++ L  FK G +Q+
Sbjct: 273 -VAENNWDHALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQM 331

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 332 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 391

Query: 359 AIEKLIEKKV 368
           AIE LI + +
Sbjct: 392 AIEALIGQTL 401


>gi|315658166|ref|ZP_07911038.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           lugdunensis M23590]
 gi|315496495|gb|EFU84818.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           lugdunensis M23590]
          Length = 447

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 137/445 (30%), Positives = 212/445 (47%), Gaps = 14/445 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ A+ D  + KPT IQ + IP +L+R ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FETFNLESTMLDAIKDLNFEKPTEIQNRIIPKILKRTNLIGQSQTGTGKSHAFLLPLMHL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           ++        P+ +++ PTRELA Q+    +   +   N+ V+L IGG   E   ++   
Sbjct: 66  IDIDLQE---PQVIVVAPTRELAQQLYQATQHLAQFKSNVKVSLFIGGTDIEKDKQRTHI 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
               +I TP RI D    G L ++    L+IDEAD M+D+G I  +  I + +  T    
Sbjct: 123 QPQFIIGTPTRINDLAMSGHLHVHLASYLIIDEADLMIDLGLIDQVDQIAARLNDTSNIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+   L      +L  P+ I V+  S   + IE   + T      +  L       
Sbjct: 183 VFSATIPKSLHPFLNKYLNQPEFIVVDNQSQNKKNIEFYLIPTKGTAKVEKTLQL---ID 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFCN ++N   L  SL   G  V  IHG +  R R + +   +    Q ++A
Sbjct: 240 ILNPYLCIIFCNSRENANELADSLNASGIKVGMIHGGLTPRERKQQMKRIRNLDFQFVIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + +D  +I  IE
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYRGVAITLYSPDDEHNISLIE 359

Query: 362 K--LIEKKVDWLNGDLSSLN-----PPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                 + VD  N +L  +         E+ D    N  ++      K+      KK + 
Sbjct: 360 DKGYQFETVDIKNNELQPVKSFNTRKKRERKDDHLTNEVKQKVRSKSKNKVKPGYKKKFK 419

Query: 415 SQKSHIPLKESEKISKLQQDIQEND 439
            Q   +  +E ++ SK Q      +
Sbjct: 420 QQVEQMKRQERKQYSKRQNRQNRKN 444


>gi|152060505|sp|A5DIX5|ROK1_PICGU RecName: Full=ATP-dependent RNA helicase ROK1
          Length = 537

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 116/437 (26%), Positives = 197/437 (45%), Gaps = 14/437 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F DL     L+ K++  ++ +GY +PT IQ + IP   +  D+   A TG+GKT ++++
Sbjct: 103 SFEDLIARCNLNRKLLANLIASGYSEPTAIQCEAIPASAEGRDLIACAPTGSGKTLAYLI 162

Query: 58  PMLTI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           PM    +   + +    R +++ PT ELA Q+        +  NL V LL   +  +  +
Sbjct: 163 PMAQALISSPKTKNYGIRGVVIAPTNELAIQIYQTLAPMCRGSNLNVTLLSKQVASKISS 222

Query: 117 KKLE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +     DVLICTP R++D   + ++ ++ +E LVIDEAD++ D GF+     I S   
Sbjct: 223 SIISANKFDVLICTPLRLIDLVKKEQVDLSKVEHLVIDEADKLFDHGFVEQTDEILSHCT 282

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              +     +       +   N +   +   +      A T     +        K   +
Sbjct: 283 LPTRRTSMFSATIPSGVEEMANSIMKDQIRIIVGHKEGASTSIDQKLVFTGNEEGKLLAI 342

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q++Q  +     IIF         L H L     +V  IH     + R + +  FK G 
Sbjct: 343 RQMVQQGEFKPPIIIFLQSIPRAKALFHELIYDKLNVEVIHAERTPKQREEAIRRFKNGD 402

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +++ +D+ ARG+D   V  V N+DVP  ++ Y+HRIGRTGR G+ GKA T   KED  
Sbjct: 403 AWVLITTDVLARGVDFKGVNLVINYDVPQTSQAYVHRIGRTGRGGKEGKAVTFFTKEDKL 462

Query: 356 HIDAIEKLIEKK------VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            I  +  ++++        +W+   +  L    EK  I QH   RK      +     R+
Sbjct: 463 AIKPVLNVMKQSGCHEGYSEWMES-MEKLTKK-EKQQIKQHEIKRKKISTVPQVVSKKRK 520

Query: 410 KKNYSSQKSHIPLKESE 426
           ++    + S    +E++
Sbjct: 521 QRKEMIEASKRRKEETK 537


>gi|304414180|ref|ZP_07395548.1| ATP-dependent RNA helicase [Candidatus Regiella insecticola LSR1]
 gi|304283394|gb|EFL91790.1| ATP-dependent RNA helicase [Candidatus Regiella insecticola LSR1]
          Length = 431

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 131/423 (30%), Positives = 210/423 (49%), Gaps = 9/423 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P+V+  + + G+   TPIQ  T+P+ L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPQVIEVLENEGFHNCTPIQALTLPITLTGQDVAGQAQTGTGKTLAFLASTFH 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                  +    +  PR LI+ PTRELA Q+  +     ++  L + L  GG  ++ Q K
Sbjct: 70  HLLSFPAEEGKMINQPRALIMGPTRELALQIHADAVSLSQSSGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE+G D+LI T GRI+ +  +G + +  I+++V+DEADRM D+ FI  I+ +   +P  
Sbjct: 130 VLEKGVDILIGTTGRIIGYAKQGYINLAAIQVVVLDEADRMCDISFIKDIRWLFHSMPSA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T   +     F       +        +T        +   +++   L Q
Sbjct: 190 DKRLNMLFSATLSCRVHELAFELMHN-GQYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R +IL  F +G + 
Sbjct: 249 TLIEEEWPDRCIIFSNTKHRCEDIWRHLAADGHRVGLLTGDVAQKKRQRILEEFTKGDLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGYSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHN-HARKNNPIPQKSTGFDRRKKNY 413
            AIE  I  ++     +  SL    P  + +  A+      +   + +      R  +  
Sbjct: 369 PAIEGYIGHRIPVSKYNSDSLLTDLPQPKPLPRARRTLVGTRRQSVSRSDNNVLRNNRKR 428

Query: 414 SSQ 416
           S Q
Sbjct: 429 SGQ 431


>gi|119186507|ref|XP_001243860.1| hypothetical protein CIMG_03301 [Coccidioides immitis RS]
 gi|118595360|sp|Q1E2B2|DRS1_COCIM RecName: Full=ATP-dependent RNA helicase DRS1
          Length = 840

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 146/454 (32%), Positives = 223/454 (49%), Gaps = 24/454 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  LS  ++  +   G+  PTPIQ K IP+ L   D+ G A TG+GKTA+F++P+L 
Sbjct: 320 TFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPVGLLGKDLVGGAVTGSGKTAAFIIPILE 379

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++
Sbjct: 380 RLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKQ 439

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 440 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILNTIPKSRQT 499

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTD + K+    L  P R+ V++   T  T+   FV        K      LL 
Sbjct: 500 MLFSATMTDSVDKLIRVGLNRPVRLMVDSKKHTVGTLVQEFVRLRPGREGKRMGYLVLLC 559

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       I+F  QKK            G     +HG++ Q  R+  +  F++G +  ++
Sbjct: 560 NTIYTNRVIVFFRQKKEAHRARIIFGLLGLKAAELHGSMSQEQRINAVEAFRDGKVPFLL 619

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + A 
Sbjct: 620 ATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAA 679

Query: 361 --------EKLIEK------------KVDWLNGDLSSL---NPPLEKIDIAQHNHARKNN 397
                    K++ +            KV+ +  ++  +       +++  A+    R  N
Sbjct: 680 VKAGRAQGAKIVSRVVDPAVADEWASKVEEMQAEIEDILKEEKEEKQLAQAEMQVKRGQN 739

Query: 398 PIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKL 431
            I   S    R K+ +   +      +   +S+L
Sbjct: 740 LIKHGSEIMARPKRTWFETEREKREAKKRALSEL 773


>gi|89891288|ref|ZP_01202795.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
 gi|89516600|gb|EAS19260.1| ATP-dependent RNA  helicase [Flavobacteria bacterium BBFL7]
          Length = 644

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 143/477 (29%), Positives = 246/477 (51%), Gaps = 32/477 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
           +F  LGLS  ++  + D G+  PT IQ ++IP++L+   D  G+AQTGTGKTA+F LP+L
Sbjct: 14  NFEVLGLSQPLLNGLADMGFENPTEIQQQSIPILLKHDGDFIGLAQTGTGKTAAFGLPLL 73

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
            +++     V+    LIL PTRELA Q+    E+  K+      + + G      Q + +
Sbjct: 74  DLIDVNSREVQA---LILAPTRELAQQICGQMEQMSKHLGKLNVVPVFGGANIMNQIRDI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGR++D   R ++ ++ ++ +V+DEAD ML+MGF   I  I S     R 
Sbjct: 131 RRGAQIIVATPGRLMDLMKRREVKLDALKYMVLDEADEMLNMGFKEDIDFILSKSDTGRN 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM  E++++ + ++  P+ + +N  +   + IEH  +   A          +  
Sbjct: 191 IWLFSATMAREIKRIVDTYMVQPEEVRINPKNIVNKNIEHQSIQLKASDK---IEALRRF 247

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D    G++FC  K++  N+   L   G++  A+HG++ Q  R   +  F+   ++L+
Sbjct: 248 LDYDEDMFGVVFCRTKRDTQNVADQLNNNGYATEALHGDMSQAQRDAAMKRFRNKNLKLL 307

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+ D+ HV +F +P+  E Y HR GRT RAG+ G +  L+ + D + +  
Sbjct: 308 IATDVAARGIDVDDITHVIHFALPDDPEFYTHRSGRTARAGKKGVSIALITRGDNRKLKF 367

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKSTGFDRRKKNYSSQKS 418
           I   +   +++  G++ +L        I Q   +R   N I Q+       +   + Q+S
Sbjct: 368 IASKLG--IEFTQGEVPALEA------ITQKRISRWSENMIKQEINEKIDEQLVNAVQES 419

Query: 419 HIPLKESEKISKL----------QQDIQENDADSLGF-RGNMPAFMLPKNRGKLNDK 464
              + + E I+KL          +  I + +  S G  R + P     + RGK   +
Sbjct: 420 FADVTKEEIIAKLLTKEYNSIYKRNSISDLNDRSKGRDRDDSP----RRERGKRTSR 472


>gi|9438227|gb|AAF86585.1| DEAD box RNA helicase [Homo sapiens]
          Length = 724

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 133/441 (30%), Positives = 217/441 (49%), Gaps = 25/441 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 288 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 347

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             +            ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 348 AHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGH 407

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 408 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 467

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       V    Q+SK
Sbjct: 468 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSK 527

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK        L ++  S  +IHG+ +QR R + L +
Sbjct: 528 REKLVE--ILRNIGDERTMVFVETKKKADFTATFLCQEKISTTSIHGDREQREREQALGD 585

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 586 FRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 645

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L      +   LE+I  + +      +         D RK
Sbjct: 646 LESDNH------LAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTRK 699

Query: 411 KN-------YSSQKSHIPLKE 424
                    +SS ++  P+ +
Sbjct: 700 GKSTLNTAGFSSSRAPNPVDD 720


>gi|15225898|ref|NP_182105.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|108861901|sp|Q94BV4|RH6_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 6
 gi|3386613|gb|AAC28543.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
 gi|330255510|gb|AEC10604.1| DEAD-box ATP-dependent RNA helicase 6 [Arabidopsis thaliana]
          Length = 528

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 184/372 (49%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L   ++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGKT +F +P L 
Sbjct: 155 EFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLE 214

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++       + + +IL PTRELA Q +   ++  K   + V +  GG        +L +
Sbjct: 215 KIDP---ENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQ 271

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGRILD   +G  ++ +  +LV+DEAD++L + F P I+ +   +P +RQ L
Sbjct: 272 PVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQIL 331

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT    ++     F     +           T+            ++       L S
Sbjct: 332 MFSATFPVTVKS----FKDRYLKKPYIINLMDQLTLMGVTQYYAFVEERQKVHCLNTLFS 387

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 388 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVC 447

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E+Y+HR+GR+GR G  G A  LV  ED   +   E
Sbjct: 448 TDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTE 507

Query: 362 KLIEKKVDWLNG 373
           + +  ++  +  
Sbjct: 508 QELGTEIKPIPS 519


>gi|18410973|ref|NP_567067.1| DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana]
 gi|42572719|ref|NP_974455.1| DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana]
 gi|79315530|ref|NP_001030884.1| DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana]
 gi|75329861|sp|Q8LA13|RH11_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 11
 gi|21593670|gb|AAM65637.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|332646270|gb|AEE79791.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana]
 gi|332646271|gb|AEE79792.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana]
 gi|332646272|gb|AEE79793.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana]
          Length = 612

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 135/388 (34%), Positives = 208/388 (53%), Gaps = 13/388 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD+ L   +   +    YV+PTP+Q   IP++L   D+   AQTG+GKTA+F  P+++
Sbjct: 152 TFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIIS 211

Query: 62  ILEKGRA-------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            + K +        R   P  +IL PTRELA Q+ D  +K+     + V +  GG P   
Sbjct: 212 GIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQ 271

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++LERG D+L+ TPGR+ D   R ++ M  I  L +DEADRMLDMGF P I+ I   +
Sbjct: 272 QLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQM 331

Query: 175 PFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                   QT+LFSAT   ++Q+++ +F+ N   + V    S+ + I            +
Sbjct: 332 DMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKR 391

Query: 231 KCALLQQLLQSQDTMKNGI--IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
              +     Q +   K  +  +F   K+    L + L    F   +IHG+  Q+ R   L
Sbjct: 392 SHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVAL 451

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G A   
Sbjct: 452 RSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAF 511

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
             + + +   ++ +L+++    +   L+
Sbjct: 512 FNENNAQLARSLAELMQEANQEVPEWLT 539


>gi|326430321|gb|EGD75891.1| DEAD box polypeptide 41 [Salpingoeca sp. ATCC 50818]
          Length = 619

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 130/396 (32%), Positives = 196/396 (49%), Gaps = 18/396 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
           +F D+ L   +V  +   G   PTPIQ++ +P+ L   D+ GIA TG+GKT  F LP   
Sbjct: 183 NFRDMKLPTCLVDYLDSQGIKTPTPIQMQGLPVALSGRDMIGIAFTGSGKTLCFSLPAIM 242

Query: 59  --MLTILEKGRARVRMPRTLILEPTRELAAQVADNFE------KYGKNYNLTVALLIGGI 110
             M   ++    R   P   +L P+RELA Q  D  +        G    L + L +GG+
Sbjct: 243 LTMEQEIKMPFQRGEGPYACVLCPSRELARQTFDAVKEYAGVLHKGGMPKLNIVLCMGGV 302

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q  +      + +CTPGR++D   + K   N      +DEADRM+D+GF   I+ I
Sbjct: 303 DMREQLYECHNIVHIAVCTPGRLIDMLTKKKFTFNVCRYFCMDEADRMVDLGFEEDIRTI 362

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQT+LFSATM  +++     F Q+     +      A       V        
Sbjct: 363 FSFFNGQRQTVLFSATMPTKIRD----FAQSALVDPITVNVGRAGAASLDVVQEVEHVRP 418

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V ++   L  +G    AIHG  DQ  R   +  
Sbjct: 419 EAKIVYLLECLQKTPPPVMIFSEKKADVDDIHEYLLLKGVQAVAIHGGKDQEERDMAVKA 478

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK+G   ++VA+D+A++GLD   + HV NFD+P+  ENY+HRIGRTGR+GR G A T + 
Sbjct: 479 FKKGQKDVLVATDIASKGLDFKGIQHVINFDMPDELENYVHRIGRTGRSGRTGLATTFIN 538

Query: 351 KE--DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
            E  +I  +D ++ L+++    +   L +L    EK
Sbjct: 539 DEVPEISLLD-LKYLLKEAKQRVPPFLQNLRSEHEK 573


>gi|307198933|gb|EFN79685.1| Probable ATP-dependent RNA helicase DDX52 [Harpegnathos saltator]
          Length = 452

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 101/431 (23%), Positives = 181/431 (41%), Gaps = 11/431 (2%)

Query: 2   DFADLG----LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           DF +L     +S  ++  +    Y+ PTP+Q++ +P++L+  ++   A TG+GKTA+F+L
Sbjct: 23  DFEELKTKYQISENLMNNMKACDYICPTPVQMQAMPILLEGRNILACAPTGSGKTAAFLL 82

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI---PFEA 114
           P++  L+K + +      +IL PTRELA Q           Y+  + ++           
Sbjct: 83  PIICSLQKPQNKGFR--AVILSPTRELAKQTYRECLSLSDGYDFRIHIINKTNQALTKYG 140

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
            +   +    +        L + +   + + N+E L++DEAD++ + G   + Q +  + 
Sbjct: 141 PSSSQKFDILITTPKRLVFLLNQDPPAISLKNVEWLIVDEADKLFEDGIRGFRQQLDEIT 200

Query: 175 PFTRQTLLFSATM--TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                  L       T+             + + V      A T        +    K  
Sbjct: 201 KACTNDNLHCGMFSATNTPVVTKWCRRNMKRLVTVTVGQRNAATDLVEQELVFVGSEKGK 260

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            +  + +  +      +IF   K+    L + L   G  V  IH +     R   +  F+
Sbjct: 261 LMELRNMIRKGVAPPVLIFVQSKERAQELFNELIYDGVYVDVIHADRTVTQRDNTVRCFR 320

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG I +++ ++L  RG+D   V  V N+D P+ A +YIHRIGRTGRAG  GKA T    +
Sbjct: 321 EGKIWMLICTELMGRGIDFIGVNLVVNYDFPSSAISYIHRIGRTGRAGHKGKAITFFTTQ 380

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           D  ++ +I  +I      +   + ++    +K        A     I   ST    ++K 
Sbjct: 381 DTANLRSIATVIRASGCHVPDYMLAMKKHSKKERRKLERTASTREKILTVSTYKRHKRKL 440

Query: 413 YSSQKSHIPLK 423
           +  QK     K
Sbjct: 441 HVEQKLETEEK 451


>gi|296270955|ref|YP_003653587.1| DEAD/DEAH box helicase domain-containing protein [Thermobispora
           bispora DSM 43833]
 gi|296093742|gb|ADG89694.1| DEAD/DEAH box helicase domain protein [Thermobispora bispora DSM
           43833]
          Length = 618

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 151/408 (37%), Positives = 221/408 (54%), Gaps = 12/408 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+ P++  A+   G V P PIQ   +PL L   D+ G A+TGTGKT +F +P L 
Sbjct: 9   TFRDLGVIPEIADALETEGIVTPFPIQEMALPLALSGQDIIGQARTGTGKTYAFGIPTLQ 68

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++ K R   + PR LIL PTRELA QV ++           +  + GG  +E Q + L+ 
Sbjct: 69  LIGKPRKNRKKPRGLILAPTRELALQVTEDLVLAAGKLGTRITTVYGGRAYEPQIEALKN 128

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR+LD  N+  L ++ I ILV+DEADRMLD+GF+P I+ I  L+P  RQT+
Sbjct: 129 GVDVVVGTPGRLLDLVNQKHLDLSQIAILVLDEADRMLDLGFLPDIERIIKLLPEKRQTM 188

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+  +S  +L  P  I        AET        Y  +      +   +  
Sbjct: 189 LFSATMPGEIVALSRRYLNRPTHIRAEIAEIEAETKPRTTQFVYRTHRMDKIEILARVLQ 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   ++FC  K+    + + L  +GF+V A+HG++ Q  R + L  F+ G I ++VA
Sbjct: 249 STELTLAMVFCETKRACDMVANQLRDRGFAVAAVHGDLSQSQREQALRAFRNGKINVLVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV HV N+D+P   + YIHRIGRTGRAGR G A T V   ++     I 
Sbjct: 309 TDVAARGIDVDDVTHVINYDLPQDEKTYIHRIGRTGRAGRSGVAITFVEWTELARWMLIN 368

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             +   +            P+E    + H ++  +  IP+ + G   R
Sbjct: 369 SALGLGI----------PDPVETYSSSPHLYSDLH--IPEGAKGVLPR 404


>gi|307261010|ref|ZP_07542692.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869312|gb|EFN01107.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 406

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 125/398 (31%), Positives = 202/398 (50%), Gaps = 6/398 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   V+ A+   G+   TPIQ KT+P+ L  +D+ G AQTGTGKT +F++ +   
Sbjct: 10  FIDFPIHENVLAALDSKGFEFCTPIQAKTLPITLAGNDIAGQAQTGTGKTLAFLIAVFHY 69

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                       PR +IL PTRELA Q+  + E   K+ +L +AL  GG  ++ Q + +E
Sbjct: 70  LLTNDSATNKNQPRAIILAPTRELAVQIGSDAELLVKHSDLKLALAYGGDGYDKQIQAIE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ T GR++D+  +G + ++ ++++V+DEADRM D+GFI  I+ +    P   Q 
Sbjct: 130 QGVDILVGTTGRVIDYVKQGIINLDKVQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEQR 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L    + T   +     +       +         T        +   ++    L   L 
Sbjct: 190 LTMLFSATLSPRVRELAYEDMDN-AQYVEIEPLQRTGHRIKEELFYPSNEDKMALLLTLL 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     +IF N K     +   L   G  V  + G+I Q+ R+ +L +F +G + ++V
Sbjct: 249 EEEWPDRCMIFANTKHKCEEIWGYLVADGHRVGLLTGDIAQKKRLALLDSFTKGQLDILV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL IP+V HVFN+D+P+  E+YIHRIGRTGRAG  G + +   +    ++ AI
Sbjct: 309 ATDVAARGLHIPEVTHVFNYDLPDDCEDYIHRIGRTGRAGESGHSISFACERYAVNLPAI 368

Query: 361 EKLIEKKVDWLNGD---LSSLNPPLEKIDIAQHNHARK 395
           E  I   +     D   L +L  P        +   R+
Sbjct: 369 EAYIGHHIPVSQYDSGALLALPKPTRSRTTKSYQAKRR 406


>gi|309751440|gb|ADO81424.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae R2866]
          Length = 418

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 195/379 (51%), Gaps = 4/379 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 14  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 73

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 74  LLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQVI 133

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P  + 
Sbjct: 134 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 193

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L    + T   +     F       E        +T        +   ++    L   L
Sbjct: 194 RLTMLFSATLSYKVRELAFEDMND-PEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTL 252

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G + ++
Sbjct: 253 MEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDIL 312

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ A
Sbjct: 313 VATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPA 372

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+ I   +     +  +L
Sbjct: 373 IEEYIGHSIPVSQYETEAL 391


>gi|206725493|ref|NP_001126368.1| ATP-dependent RNA helicase DDX42 [Pongo abelii]
          Length = 942

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 221/379 (58%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 314 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSMWEQAKAL 373

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 374 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 433

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 434 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 493

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++
Sbjct: 494 EFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 552

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 613 LVRNLEGANQHVSKELLDL 631


>gi|75061727|sp|Q5R7D1|DDX42_PONAB RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|55731230|emb|CAH92329.1| hypothetical protein [Pongo abelii]
          Length = 942

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 221/379 (58%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 314 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSMWEQAKAL 373

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 374 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 433

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E +       ++  SK   L ++L+
Sbjct: 434 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 493

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++
Sbjct: 494 EFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 552

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 613 LVRNLEGANQHVSKELLDL 631


>gi|145638288|ref|ZP_01793898.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
 gi|145272617|gb|EDK12524.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
          Length = 415

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 195/379 (51%), Gaps = 4/379 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        PR LIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 71  LLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQVI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P  + 
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L    + T   +     F       E        +T        +   ++    L   L
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMND-PEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTL 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G + ++
Sbjct: 250 MEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDIL 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ A
Sbjct: 310 VATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPA 369

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+ I   +     +  +L
Sbjct: 370 IEEYIGHSIPVSQYETEAL 388


>gi|315182662|gb|ADT89575.1| DEAD-box ATP dependent DNA helicase [Vibrio furnissii NCTC 11218]
          Length = 406

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 148/414 (35%), Positives = 227/414 (54%), Gaps = 15/414 (3%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR 71
           +V  +   G   PT IQ + IP VL+  DV   AQTGTGKTA+F LP++        +  
Sbjct: 1   MVERLSALGIHTPTEIQAQAIPHVLEGKDVLAGAQTGTGKTAAFGLPLIQRFVDHPLQRE 60

Query: 72  MPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
                I      PTRELA QV DN + Y +   L +    GG     Q + L  GAD+LI
Sbjct: 61  PNSKDIRALVLVPTRELAQQVFDNLQSYAQGSELKIVTAYGGTSMNVQKQNLRGGADILI 120

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+LDH +   L + N E LV+DEADRMLDMGF+P IQ +   +   RQTL FSAT 
Sbjct: 121 ATPGRLLDHAHVKTLYLGNAEALVLDEADRMLDMGFMPDIQRVLRKMQHERQTLFFSATF 180

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
             +++  +   +QNP  ++V   +STA+T+E      Y    K+   L   L      + 
Sbjct: 181 DSKIKAFAHRMMQNPVEVQVTPSNSTADTVEQ---MVYPVDKKRKRELLAYLIGSRNWQQ 237

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            ++F   K+    L   L+  G    +I+G+  Q +R K L +FK G ++ ++A+D+AAR
Sbjct: 238 VLVFTRTKQGSDALAQELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIATDVAAR 297

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           G+DI  +  V NFD+P +AE+Y+HRIGRTGRAG+ G A +L++ ++   ++AIE+L++K+
Sbjct: 298 GIDIAQLEQVVNFDMPFKAEDYVHRIGRTGRAGKAGFAVSLMSHDEQPLLEAIERLLDKR 357

Query: 368 V--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +  +WL G   S       + +++ + A + N    +      + K ++++   
Sbjct: 358 LPQEWLKGYEPS------PVVVSEESQAPRRNSRSAEKRKMKAKLKIHANRGKK 405


>gi|213510948|ref|NP_001133799.1| probable ATP-dependent RNA helicase DDX41 [Salmo salar]
 gi|209155372|gb|ACI33918.1| Probable ATP-dependent RNA helicase DDX41 [Salmo salar]
          Length = 615

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 127/390 (32%), Positives = 196/390 (50%), Gaps = 16/390 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G V PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 175 SFREMKFPQAILKGLKKKGIVHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPIIM 234

Query: 62  I-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK------NYNLTVALLIGGI 110
                       +   P  LI+ P+RELA Q     E Y K        ++   L IGG+
Sbjct: 235 FSLEQEKRLPFCKSEGPYGLIICPSRELAKQTHTIIEYYCKLLEEEGAPHMRSVLCIGGM 294

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + ++ G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 295 SVKDQMEVVKHGVHMMVATPGRLMDLLQKKMISLDICRYLALDEADRMIDMGFEEDIRTI 354

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     +      A       +       +
Sbjct: 355 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPITINVGRAGAASLDVIQEVEYVKE 410

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    ++F  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 411 EAKMVYLLECLQKTPPPVLMFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 470

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FKEG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G+ G A T + 
Sbjct: 471 FKEGKKDVLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATTFIN 530

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           K  D   +  ++ L+ +    +   L  L 
Sbjct: 531 KGCDESVLMDLKALLIEAKQKVPPVLQVLQ 560


>gi|114048765|ref|YP_739315.1| ATP-dependent RNA helicase DbpA [Shewanella sp. MR-7]
 gi|113890207|gb|ABI44258.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 479

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 142/370 (38%), Positives = 212/370 (57%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P+++  +   GY + TPIQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 22  MAFSTLKLKPELLENLTTMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L+  R R++   TL+L PTRELA QVA       +  +    L +  G+P   Q   L
Sbjct: 82  NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSL 138

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH  R +L ++N+ +LV+DEADRML+MGF P +  I    P  RQ
Sbjct: 139 EHGAHIIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQ 198

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +++Q +++  + +P  ++V     T E         +    K      QLL
Sbjct: 199 TLLFSATFPEQIQSIAKQIMYDPVMVKVAV---THEKSTIEQHFYHLDDDKARMQALQLL 255

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 ++ ++FCN K+    +   L   GFSV A+HG+++QR R + L  F   +  ++
Sbjct: 256 LLDRKPESAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  VFN+ V    E +IHRIGRTGRAG  G AFT    +D   I  
Sbjct: 316 VATDVAARGLDIDALDAVFNYHVAFDTEVHIHRIGRTGRAGSKGAAFTFFDDQDGYKIAL 375

Query: 360 IEKLIEKKVD 369
           +E+ +E+ + 
Sbjct: 376 LEEYLERDIQ 385


>gi|307545782|ref|YP_003898261.1| ATP-dependent RNA helicase DeaD [Halomonas elongata DSM 2581]
 gi|307217806|emb|CBV43076.1| K05592 ATP-dependent RNA helicase DeaD [Halomonas elongata DSM
           2581]
          Length = 555

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 148/386 (38%), Positives = 226/386 (58%), Gaps = 8/386 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L P V+ AV   GY  P+PIQ +TIP +L+  D+ G AQTGTGKTA+F LP+L+
Sbjct: 10  SFGDLALLPAVLSAVETLGYETPSPIQAQTIPALLEGRDMLGQAQTGTGKTAAFALPILS 69

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            LE  R     P+ L+L PTRELA QVA +F KYG+N     VA+L GG+ +  Q + L 
Sbjct: 70  RLELDRRE---PQVLVLAPTRELAQQVAASFSKYGQNLKGLEVAILCGGMEYRDQMQALR 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGRI+DH +RG L +  +  LV+DEAD ML MGFI  ++ + +  P   Q 
Sbjct: 127 RGAQVVVGTPGRIIDHLDRGSLKLGGLSALVLDEADEMLRMGFIDDVKRVVADTPVDAQR 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + FSAT+  E++++   +L  P ++ + + +S+ + IE   V                + 
Sbjct: 187 VFFSATLPTEIERIVNQYLVEPVKVTIESRASSGDNIEQRRVRIDGGAK---LEALARIL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +   I+F   +     L   L  +G +V ++ G++DQ  R + ++  K G I +++
Sbjct: 244 EVEPVDAAIVFVRTRAACTTLMEQLSARGLNVASLSGDLDQSLRERTITRLKRGKIDVLI 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+P + HV N+D+P  AE Y HRIGRTGRAGR G A T     + + +  +
Sbjct: 304 ATDVAARGLDVPRITHVINYDLPQDAEAYTHRIGRTGRAGRAGVAITFAGNREGRKVGWL 363

Query: 361 EKLIEKKVDWLN-GDLSSLNPPLEKI 385
           E+   +K+D +   D +++    ++I
Sbjct: 364 ERATGRKMDDMELPDEAAIRAHRDEI 389


>gi|205375157|ref|ZP_03227948.1| DEAD-box ATP dependent DNA helicase [Bacillus coahuilensis m4-4]
          Length = 398

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 129/398 (32%), Positives = 212/398 (53%), Gaps = 6/398 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL  K   A+   G  +PTPIQ + IPL+++  DV   A+TG+GKT +F+LPML 
Sbjct: 3   TFNQLGLHIKSERALEQQGITEPTPIQTEVIPLMVEGRDVIAQAKTGSGKTLAFILPMLE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+                      +        +A+  G    +  +K   R
Sbjct: 63  KVDLEKIAVQGLIVAPTRELAIQVTDELKKLVELEFPEVNVLAVYGGQDVEKQLHKLETR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH  RG + ++ +++L++DEAD+ML +GF+P ++ I    P TRQT 
Sbjct: 123 NIHIVVATPGRLLDHMRRGTIDLSELDMLILDEADQMLHIGFLPEVEQIIEATPPTRQTA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT++ +++ +++ + Q P  ++V       E IE           +K       +  
Sbjct: 183 LFSATISKDVRTLAKRYQQQPYTVQVKDKERLVEEIEQ---FVVETTDRKKLQALVEVIK 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +     GIIFC   + V  L   L+ +GF V  +HG++ Q  R  ++  F++  IQL++A
Sbjct: 240 ETQPFMGIIFCRTIRRVSKLHMELKAKGFLVDELHGDLSQAKRENVMKRFRDAKIQLLIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  V HV+N+D+P   E+YIHRIGRTGRAG  G A T  A +D + + ++E
Sbjct: 300 TDVAARGLDVEGVTHVYNYDIPQDVESYIHRIGRTGRAGETGMAITFSALKDKQALQSLE 359

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNN 397
           + I++ +    +  +L S  P   K D  +    R+ +
Sbjct: 360 EGIKRSIPRKIVEVELESPTPSKGK-DQNEERKQRRED 396


>gi|183231239|ref|XP_650493.2| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|169802550|gb|EAL45107.2| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 722

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 113/369 (30%), Positives = 191/369 (51%), Gaps = 7/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +++ G++P  +  +    Y KP+P+Q + IP+++  +D    A+TG+GKT ++ +P++ 
Sbjct: 141 TWSECGINPITMDVIKALKYEKPSPVQRQAIPVIMSGYDAIVCAKTGSGKTLAYTIPLIK 200

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R   +   P  ++  P RELA Q+     K+GK  N+    + GG     Q   L
Sbjct: 201 HVMAQRPLSKGEGPIGIVFAPIRELAEQINTEINKFGKYLNIRSVAVFGGTGISNQIGAL 260

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RG ++++CTPGR++D     N     +  +  +V+DEADRM DMGF P I+ I   +  
Sbjct: 261 KRGTEIVVCTPGRMIDILVTNNGRITNLRRVTFVVLDEADRMFDMGFGPQIKRIIEGIRP 320

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +Q ++FSAT    +++ +  FL+ P  I      S         V       K   L+ 
Sbjct: 321 DKQIVMFSATFPISVEQHAREFLKKPIEIICGG-RSQVSNTIEQIVEVIETKKKIERLIS 379

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ-RSRMKILSNFKEGT 295
            +L+  +     IIF   +KN   L  +L ++  +   +HG IDQ   +  I        
Sbjct: 380 IVLEQNNKGGRIIIFTETQKNCDELYQNLMERNINCLLLHGGIDQIDRQNTIQEFKSGIG 439

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +++ + L ARGLD+  +  V N+D PN  E+Y+HR+GRTGRAG+ GKA T + KE+ +
Sbjct: 440 RTILITTSLCARGLDVKGLELVINYDCPNHLEDYVHRVGRTGRAGKRGKAITFITKEEER 499

Query: 356 HIDAIEKLI 364
           + + I K +
Sbjct: 500 YSEDIVKAL 508


>gi|294875454|ref|XP_002767329.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239868892|gb|EER00047.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 447

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 102/376 (27%), Positives = 171/376 (45%), Gaps = 4/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF D  L  +++  + + G+ KP+PIQ ++IP  L   ++   A+ GTGKTASF++PML 
Sbjct: 72  DFEDYFLKRELLMGIFEKGFEKPSPIQEESIPPALAGKNILARAKNGTGKTASFLIPMLE 131

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +            L+L PTRELA Q +   ++ GK  +  V +  GG        +L  
Sbjct: 132 KVNTDITDGIQG--LVLVPTRELALQTSAVAKELGKYMDAQVMVTTGGTSLRDDIMRLYN 189

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD  N+G   +++   + + +    L       +           +  
Sbjct: 190 TVHILVGTPGRVLDLTNKGVCSLSDTCTMCVMDEADKLLSPEFQPVVEELVRFLPKEKRQ 249

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +   + T  +  +   F        V        T++           ++       L S
Sbjct: 250 ILMFSATFPVTILD--FKNKYMPDAVEINLMEELTLKGVTQFYAFVEERQKVHCLNTLFS 307

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T+   IIFCN    V  L   + + GFS   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 308 KLTINQAIIFCNSVTRVELLAKKITELGFSCFYIHARMYQSHRNRVFHDFRNGACRCLVS 367

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI +V  V NFD P  +E Y+HRIGR+GR G  G A  ++  +D  ++  IE
Sbjct: 368 SDLFTRGIDIENVNVVINFDFPKNSETYLHRIGRSGRFGHLGIAINMLTYDDRFNLYRIE 427

Query: 362 KLIEKKVDWLNGDLSS 377
             +  ++  +   +  
Sbjct: 428 HELGTEIKPIPSHIDE 443


>gi|302801267|ref|XP_002982390.1| hypothetical protein SELMODRAFT_116186 [Selaginella moellendorffii]
 gi|300149982|gb|EFJ16635.1| hypothetical protein SELMODRAFT_116186 [Selaginella moellendorffii]
          Length = 577

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 131/392 (33%), Positives = 208/392 (53%), Gaps = 16/392 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+GL   V+  + + G   PTPIQ++ +P +L   D+ G+A TG+GKT +FVLP++ 
Sbjct: 143 SFKDMGLPKSVLRKLKEKGVKHPTPIQVQGLPAILSGRDMIGVAFTGSGKTLAFVLPLIM 202

Query: 62  ILEKGRARVR-----MPRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
           +  +   + R      P  LIL P+RELA Q  D  E++       +  +L   L IGG 
Sbjct: 203 LALEEEEKSRLKGGEGPVGLILCPSRELAKQTLDVIEEFVSVVNSSRCCHLRAMLCIGGT 262

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + + RG  +++ T GR+ D   + K+ +   + L +DEADR+ D GF   I+ +
Sbjct: 263 DMRSQLEAIRRGVHIVVATTGRLNDMLEKKKMNLERCKYLTLDEADRLCDSGFEDDIRKV 322

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
              + F RQTLLFSATM  ++Q+    F +      V    + A       V       +
Sbjct: 323 MDHLKFQRQTLLFSATMPRKIQE----FARGALVKPVVVNVARAGAASLDVVQQVEYVKQ 378

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IFC  K +V ++   L  +G  V +IHG  DQ  R   ++ 
Sbjct: 379 EAKMVYLLECLQQTPPPVLIFCESKGDVDSIYEYLVLKGVEVVSIHGGKDQEERQDAITK 438

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV- 349
           FK+G   ++VA+D+A++GLD P + HV N+D+P+  ENY+HRIGRTGR G+ G A T + 
Sbjct: 439 FKQGRKDVLVATDVASKGLDFPSIQHVINYDMPSEIENYVHRIGRTGRCGKTGIATTFIN 498

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           +K+    +  ++ L+ +    +   L SL  P
Sbjct: 499 SKQSESTLLDLKYLLREAKQKVPAFLESLEDP 530


>gi|307203840|gb|EFN82776.1| ATP-dependent RNA helicase abstrakt [Harpegnathos saltator]
          Length = 624

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 130/395 (32%), Positives = 199/395 (50%), Gaps = 16/395 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G +KPTPIQ++ IP VL   D+ GIA TG+GKT  FVLP++ 
Sbjct: 184 SFKEMKFHRGILYGLEQKGIIKPTPIQVQGIPTVLSGRDMIGIASTGSGKTLVFVLPIIE 243

Query: 62  IL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
                  +    +   P  LI+ P+RELA Q  D    Y           +   L IGG+
Sbjct: 244 FCLEQELDMPFIKKEGPYGLIICPSRELAKQTYDIIRHYTNSLRQADCPEIRSCLAIGGV 303

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
           P       + +G  +++ TPGR++D  ++  + ++    L +DEADRM+DMGF   ++ I
Sbjct: 304 PVSESLVIINKGVHIMVATPGRLMDMLHKKMVTLSVCRYLCMDEADRMIDMGFEEDVRTI 363

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM   +Q     F ++     V      A       +       +
Sbjct: 364 FSFFRGQRQTLLFSATMPKRIQN----FARSALVKPVTINVGRAGAASMNVIQEVEYVKQ 419

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K++V  +   L  +G    AIHG IDQ  R + +  
Sbjct: 420 EAKIVYLLECLQKTAPPVLIFAEKKRDVDAIHEYLLIKGVEAVAIHGGIDQEERSRSVEA 479

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+D+A++GLD  DV HV N+D+P+  ENY+HRIGRTGR+GR G A T + 
Sbjct: 480 FRGGRKDVLVATDVASKGLDFADVQHVINYDMPDDVENYVHRIGRTGRSGRTGIATTFIN 539

Query: 351 K-EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
           K  D   +  ++ L+ +    +   L  L    EK
Sbjct: 540 KANDESVLLDLKHLLMEAKQKVPPFLLELCSENEK 574


>gi|269218758|ref|ZP_06162612.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211869|gb|EEZ78209.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 531

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 139/419 (33%), Positives = 219/419 (52%), Gaps = 21/419 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD G+S  +V A+ D G   P PIQ  T+P+ L+ +D+ G A+TGTGKT  F +PML  
Sbjct: 38  FADFGVSTPIVDALKDKGITHPFPIQALTLPVALRGNDIIGQAKTGTGKTLGFGIPMLEN 97

Query: 63  LEKGRARVR---------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                              P+ L++ PTRELA QVA+          L +  + GG  +E
Sbjct: 98  TAGIDEEGWESVPVQARGKPQGLVILPTRELAKQVAEELRAAAARRRLRIVEVYGGRAYE 157

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L+ GA++++ TPGR++D      L +  +  +V+DEAD MLD+GF+  ++ I + 
Sbjct: 158 PQQEALKEGAEIVVGTPGRLVDLMKHRFLDLTYVRTVVLDEADEMLDLGFLEDVEKILAS 217

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
            P  R T+LFSATM   +  ++  ++  P  I    PS T  T++      Y  ++   +
Sbjct: 218 TPSNRHTMLFSATMPGPVVAMARRYMSRPTHIRAADPSDTGVTVKSVRQVVYRCHALNKS 277

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            +   +         I+F   K+    L   L ++GF+  A+HG++ Q +R + L  F+ 
Sbjct: 278 EVLARILQAKGRGLTIVFTRTKRTAARLAEELTERGFAAGALHGDLGQGAREQALRAFRN 337

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G + ++VA+D+AARG+D+ DV HV N+  P   + YIHRIGRTGRAG+ G A T V  +D
Sbjct: 338 GKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKTYIHRIGRTGRAGQSGTAVTFVDWDD 397

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           +     I+K +  +             PLE    ++H ++  +  IP+ +TG   R K 
Sbjct: 398 LPRWTLIDKALNLRQPE----------PLETYHTSEHLYS--DLDIPEGATGKLPRDKR 444


>gi|134292532|ref|YP_001116268.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134135689|gb|ABO56803.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
           G4]
          Length = 483

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 150/370 (40%), Positives = 218/370 (58%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  + D  Y  PTP+Q   IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIDPLLRTLQDLNYQTPTPVQANAIPAVLGGKDVMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +    V   R    +L PTRELA QV  +F +YGK  +L      GG+    Q  K
Sbjct: 61  QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + +E LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT TD+++ ++   L+NP  I V+ P++TA  I+   V    +   +  +    
Sbjct: 181 QTLLFSATFTDDIRAMAATILRNPVNISVSPPNTTASRIKQWVVPVDKRNKPELFMHL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +++  ++ ++F   +  V  L   L++ G++V  IHG+  Q +R++ L  FK   +Q+
Sbjct: 239 -VAENKWEHALVFVKTRAGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKARDVQM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPMVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEKKV 368
           AIE LI K +
Sbjct: 358 AIEALIGKTL 367


>gi|304314413|ref|YP_003849560.1| ATP-dependent RNA helicase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587872|gb|ADL58247.1| predicted ATP-dependent RNA helicase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 425

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 142/373 (38%), Positives = 220/373 (58%), Gaps = 9/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++  +S ++  A+ D G+   TPIQ  T+P+ L   DV G AQTGTGKTA+F +P+L
Sbjct: 4   LKFSEFDISGEINRALDDMGFEGTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFTIPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE  R     P+ L++ PTREL  QV D   + GK  N+ V  + GG     Q  +L 
Sbjct: 64  ENLEPERV----PQALVICPTRELCLQVTDEIRRIGKYLNVRVLAVYGGQGIGGQIAELR 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V++ TPGR++DH  RG + +  I  +V+DEAD ML+MGFI  I+ I S VP  RQT
Sbjct: 120 RGVHVIVATPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPERRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT++  + +++E ++++P+ + V       +         +    +    L   + 
Sbjct: 180 MLFSATISKPVLRIAERYMRSPQILRVEK-----KHSPRIDEFYFKTREEDKVELLDWIL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + + ++ G+IFCN K+ V  L   L + G+SV  IHG++ Q  R +++  F++G   L++
Sbjct: 235 TSNDIRMGLIFCNTKRRVQRLRKQLSRMGYSVDEIHGDLSQSKRERVMERFRKGRFNLLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ +PDV  V N+D+P   E Y+HRIGRTGRAG  GK+FTLV   ++  +  I
Sbjct: 295 ATDVAARGIHVPDVEVVVNYDLPFENEYYVHRIGRTGRAGSSGKSFTLVVGREVHRLRRI 354

Query: 361 EKLIEKKVDWLNG 373
           +    K++   N 
Sbjct: 355 QSFTGKRIKKSNM 367


>gi|91791813|ref|YP_561464.1| ATP-dependent RNA helicase RhlB [Shewanella denitrificans OS217]
 gi|123166515|sp|Q12S35|RHLB_SHEDO RecName: Full=ATP-dependent RNA helicase rhlB
 gi|91713815|gb|ABE53741.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 432

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 129/380 (33%), Positives = 208/380 (54%), Gaps = 5/380 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L  +V+ A+ + G+   TPIQ  ++P++L+  D+ G AQTGTGKT +F++     
Sbjct: 11  FADLPLHAEVIQALNENGFEFCTPIQALSLPVLLKAKDIAGQAQTGTGKTMAFLVATFNH 70

Query: 63  ----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR +I+ PTRELA Q+A +     K+  L V ++ GG  +E Q + 
Sbjct: 71  LLTTPAPQARELNQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGESYEVQREV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G D+LI T GRI+D+  +G + +N+I+ +V+DEADRM D+GFI  I+ +   +P   
Sbjct: 131 LDKGVDILIGTTGRIIDYVRQGVISLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAS 190

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             L    + T  ++     +       +V       +T ++     +   ++    L   
Sbjct: 191 SRLNMLFSATLSMKVQELAYDHMNDPEKVEVTPEE-KTSKNIKEEIFYPSTEDKMRLLLT 249

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +D  +  I+F N K +  NL   LE  G  V  + G++ Q+ R++IL  F  G + +
Sbjct: 250 LMEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGDLDV 309

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGL I DV HV+N+D+P+  E+Y+HRIGRTGRAG  G + +   +    ++ 
Sbjct: 310 LVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACETYALNLP 369

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
           AIE+ I   V     D  +L
Sbjct: 370 AIEQYIGHSVPVSRYDREAL 389


>gi|119946657|ref|YP_944337.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119865261|gb|ABM04738.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 453

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 124/442 (28%), Positives = 213/442 (48%), Gaps = 15/442 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L   ++ A+   G+ +PT IQ   IPL +   D+   A TGTGKT +F+LP +
Sbjct: 1   MSFEALELDQHLLNAIAKMGHTRPTSIQTLAIPLAMDERDIMASAPTGTGKTLAFLLPAV 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              ++  R +    R LIL PTRELA Q++       +   L V  +IGG+ ++ Q + +
Sbjct: 61  QRLIDFPRRKGGSARILILTPTRELAVQISGVASALVEGTQLVVGNIIGGVSYQEQEEVI 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D++I TPGR++++ +        +E L++DEADRMLDMGFI  +  I     + + 
Sbjct: 121 TDSVDIVIATPGRLMEYIDSEAFDCREVETLILDEADRMLDMGFIKAMDRIVGETRWRKH 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA----LL 235
           T LFSAT+     +     +           S         +V        K      +L
Sbjct: 181 TALFSATLEGRGLREFCRDVLRNPAQLTAEVSRRESGKILQWVHLADSPEHKLQLLAAIL 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q ++ ++  +  I+F   +  +  L   L +       + G +DQ  R   L+ F+ G 
Sbjct: 241 EQPVKEEEQQQKVIVFVKTRDRLTELVAQLAELQIPCTYLRGEMDQEKRNLALNQFRAGN 300

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I +++A+D+AARG+D+PD+ HV N+D+P  A+ Y+HRIGRT R G+ G A +L+   D+ 
Sbjct: 301 INILIATDVAARGIDVPDITHVINYDMPRSADIYVHRIGRTARGGKKGIAISLIEAHDVD 360

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH--------NHARKNNPIPQKSTGFD 407
            +  +E+  ++ +      + +L P  ++   +Q             +   + ++     
Sbjct: 361 MLAKVERYTDQIIKR--RVVKTLRPTHKEAQPSQRKTKNNVNKKSKNREEELKKEQKAKR 418

Query: 408 RRKKNYSSQKSHIPLKESEKIS 429
            +KK    ++ H  +K   K S
Sbjct: 419 LKKKEDMGKQRHRNIKAKGKPS 440


>gi|315045866|ref|XP_003172308.1| ATP-dependent RNA helicase DBP4 [Arthroderma gypseum CBS 118893]
 gi|311342694|gb|EFR01897.1| ATP-dependent RNA helicase DBP4 [Arthroderma gypseum CBS 118893]
          Length = 818

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 122/455 (26%), Positives = 199/455 (43%), Gaps = 26/455 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F DL LS      +  + + + T IQ + IP  LQ  D+ G A+TG+GKT +F++P + 
Sbjct: 51  SFTDLPLSEATRLGLSASHFKELTDIQSRAIPHALQGRDILGAAKTGSGKTLAFLVPVLE 110

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  K          +I+ PTRELA Q+ +   K G+++  +  L+IGG   + + ++L 
Sbjct: 111 NLFRKQWTEYDGLGAMIISPTRELAIQIFEVLRKIGRHHTFSAGLVIGGKSLQEEQERLG 170

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +           +NI++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 171 RMNILVCTPGRMLQHMDQTAAFDTDNIQMLVLDEADRIMDMGFQSTVDAIVEHLPKERQT 230

Query: 181 LLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT T ++      +             SS   +             K   L   + 
Sbjct: 231 MLFSATQTKKVSDLARLSLQDPEYISVHEAASSATPSTLQQHYVVTPLPDKLDTLWSFIR 290

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S  +        +++   V       + G  +  +HG   Q +R+ I   F       +
Sbjct: 291 SSVKSKIIVFFSSSKEVRFVYEAFRQMQPGIPLLHLHGRQKQGARLDITHKFSASKNSCL 350

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKHID 358
            A+D+ ARGLD P V  V   D P  ++ YIHR+GRT R  R G+A   +   E+I  + 
Sbjct: 351 FATDVVARGLDFPAVDWVIQLDCPEDSDTYIHRVGRTARYERDGRAVLFLDPSEEIGMLS 410

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +E   +KK+            P+EKI+I  +      + +  ++  F   +  Y  QK+
Sbjct: 411 RLE---QKKI------------PIEKINIRANKQQSIKHQL--QNMCFKDPQLKYLGQKA 453

Query: 419 HIPLKESEKISKLQQDIQ------ENDADSLGFRG 447
                +S  I K ++         E  A SLG  G
Sbjct: 454 FTSYVKSIYIQKDKEVFDVKALPLEEFAASLGLPG 488


>gi|117921821|ref|YP_871013.1| ATP-dependent RNA helicase DbpA [Shewanella sp. ANA-3]
 gi|117614153|gb|ABK49607.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 479

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 142/370 (38%), Positives = 212/370 (57%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P+++  +   GY + TPIQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 22  MAFSTLKLKPELLENLTTMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L+  R R++   TL+L PTRELA QVA       +  +    L +  G+P   Q   L
Sbjct: 82  NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSL 138

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH  R +L ++N+ +LV+DEADRML+MGF P +  I    P  RQ
Sbjct: 139 EHGAHIIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQ 198

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +++Q +++  + +P  ++V     T E         +    K      QLL
Sbjct: 199 TLLFSATFPEQIQSIAKQIMYDPVMVKVAV---THEKSTIEQHFYHLDDDKARMQALQLL 255

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 ++ ++FCN K+    +   L   GFSV A+HG+++QR R + L  F   +  ++
Sbjct: 256 LLDRKPESAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVL 315

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  VFN+ V    E +IHRIGRTGRAG  G AFT    +D   I  
Sbjct: 316 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAFTFFDDQDGYKIAL 375

Query: 360 IEKLIEKKVD 369
           +E+ +E+ + 
Sbjct: 376 LEEYLERDIQ 385


>gi|302759400|ref|XP_002963123.1| hypothetical protein SELMODRAFT_165735 [Selaginella moellendorffii]
 gi|302796878|ref|XP_002980200.1| hypothetical protein SELMODRAFT_153756 [Selaginella moellendorffii]
 gi|300151816|gb|EFJ18460.1| hypothetical protein SELMODRAFT_153756 [Selaginella moellendorffii]
 gi|300169984|gb|EFJ36586.1| hypothetical protein SELMODRAFT_165735 [Selaginella moellendorffii]
          Length = 574

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 139/397 (35%), Positives = 207/397 (52%), Gaps = 25/397 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + GLS +++ AV  AGY  P+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPMLT
Sbjct: 155 NWEEGGLSTELLKAVNKAGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLT 214

Query: 62  I-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                           P  +++ PTRELA Q+ +   K+    ++ V  ++GG   E Q 
Sbjct: 215 YISRLPPMTEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLDIHVVSIVGGQSIEEQG 274

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY---------- 166
            KL +G +++I TPGR+LD   R   ++N    +V+DEADRM+DMGF P           
Sbjct: 275 FKLRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 334

Query: 167 -------IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
                             R T +FSATM   +++++  +L+NP  + + T     +T + 
Sbjct: 335 SNLKPENEDAELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGT---AGKTTDL 391

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                      +     Q + +    K  I+F N KK    L   L+K G+ V  +HG  
Sbjct: 392 ITQNVLMVKDSEKLDRLQRMLNDLADKTAIVFVNTKKAADGLARQLDKLGYRVTTLHGGK 451

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q  R   L  F+      +VA+D+A RG+DIPDV HV NFD+PN  E Y HRIGRTGRA
Sbjct: 452 TQEQREISLEGFRSKRYNCLVATDVAGRGIDIPDVAHVINFDMPNNIEMYTHRIGRTGRA 511

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
           G+ G A T +   D +    +++++ +    +  +LS
Sbjct: 512 GKTGVATTFLTLGDTEVFYDLKQMLVQSNSPVPPELS 548


>gi|288924465|ref|ZP_06418438.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
 gi|288344188|gb|EFC78744.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
          Length = 459

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 135/372 (36%), Positives = 207/372 (55%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   V+ A+ + GY  P+PIQ+ TIP +L+  DV G+AQTGTGKTA+F LP+L+
Sbjct: 19  TFHDLGLGTAVLRALTELGYEVPSPIQVGTIPALLEGRDVVGLAQTGTGKTAAFALPILS 78

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            ++    R    + L+L PTREL  QVA+ F +Y  +      L + G    A     + 
Sbjct: 79  RIDV---RSTSTQALVLAPTRELVLQVAEAFGRYAHHLPGLHVLPVYGGQAYAPQLAGIR 135

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH  RG L +  + +LV+DEAD ML MGF   +  I +  P  +Q 
Sbjct: 136 RGAQVVVGTPGRVIDHLERGTLDLGGLRMLVLDEADEMLRMGFQEEVDRILADTPDAKQV 195

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++++S  +L++P  I V   + TA      F+                ++
Sbjct: 196 ALFSATMPAPIRRISRQYLRDPVEITVRARTVTAANTRQRFLTVAGPRKMDALTRVLEVE 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + M   +   +  ++V     S      ++   +G++ Q  R K+++  ++G + L+V
Sbjct: 256 PFEAMIIFVRTKSATEDVAERLRSRGFATEAI---NGDLGQPQREKLIAQLRDGALDLLV 312

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV N+D+P   E+Y+HRIGRTGRAGR G+A  LV   +   + AI
Sbjct: 313 ATDVAARGLDVERVTHVVNYDIPTDPESYVHRIGRTGRAGRSGEALLLVTPREKGLLAAI 372

Query: 361 EKLIEKKVDWLN 372
           EK   + +  + 
Sbjct: 373 EKATRQPLAEME 384


>gi|197294292|ref|YP_001798833.1| DEAD/DEAH box helicase-like [Candidatus Phytoplasma australiense]
 gi|171853619|emb|CAM11490.1| DEAD/DEAH box helicase-like [Candidatus Phytoplasma australiense]
          Length = 564

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 137/413 (33%), Positives = 235/413 (56%), Gaps = 17/413 (4%)

Query: 1   MD--FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           M+  F  L +  +   A+ +  +++ TPIQ   IP ++Q HDV G AQTGTGKT +F +P
Sbjct: 1   MNILFEQLPILEQTKKALQELNFIEATPIQALVIPEIIQGHDVIGQAQTGTGKTFAFGIP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNK 117
           ++  ++    ++   ++LIL PTREL  QV +  +K  + Y    +A++ GG  +  Q +
Sbjct: 61  IIEKIDY---KLSKTQSLILCPTRELTLQVYEELKKLLRYYPQIRIAVVFGGESYTKQFR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE    ++I TPGR++DH  RGK+ ++ ++IL +DEAD ML MGF   ++ I   +P  
Sbjct: 118 ALESKPHLIIATPGRVIDHIERGKIDLSALKILTLDEADEMLKMGFQEALETILKQIPEE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT+   +++++  + +N K ++V         IE  +         K  +   
Sbjct: 178 RQTVLFSATLPPSIKQIASKYQKNTKILQVPVKKLAVNAIEQYYFLVKEFDKNKLLVRLL 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                    + I+F N KK+V  +   L+ +GF   A+HG++ Q  R  +++NF++G I+
Sbjct: 238 ---DLKRDYSTILFANTKKDVDEITSFLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIK 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARG+DI D+  V N+D+P+  E Y+HRIGRTGRAG+ G A++ ++      +
Sbjct: 295 ILIATDVAARGIDISDIKMVVNYDLPHEDEVYVHRIGRTGRAGKKGLAYSFISPRKFSQL 354

Query: 358 DAIEKLIEKKVDWLN-GDLSSLNPPL------EKIDIAQHN-HARKNNPIPQK 402
             +E  +++KV +L    +  +   +      + IDI + N     NNP+ +K
Sbjct: 355 KKLEYYLKEKVKFLEIPSVEEIKKQILENFEQKVIDIIEKNSQENANNPMIEK 407


>gi|297735665|emb|CBI18352.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  152 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 139/427 (32%), Positives = 214/427 (50%), Gaps = 32/427 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  LSP+++ AV  AGY  P+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPMLT
Sbjct: 211 SWVESKLSPELLKAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLT 270

Query: 62  I-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                           P  +++ PTRELA Q+ D   K+     + V  ++GG   E Q 
Sbjct: 271 YISRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQG 330

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY---------- 166
            ++ +G +V+I TPGR++D   R   ++N    +V+DEADRM+DMGF P           
Sbjct: 331 FRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 390

Query: 167 -------IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
                             R T +FSATM   +++++  +L+NP  + + T     + I  
Sbjct: 391 SNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQ 450

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
             +              Q L  +   K  I+F N KK+   L   L+K G+ V  +HG  
Sbjct: 451 HVIMVKGSEK---MPKLQKLLDELGDKTAIVFINTKKSTDTLAKGLDKAGYRVTTLHGGK 507

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q  R   L  F+     ++VA+D+A RG+DIPDV HV N+D+P   E Y HRIGRTGRA
Sbjct: 508 SQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRA 567

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           G+ G A T +   D      +++++ +         S + P L + + ++       +  
Sbjct: 568 GKTGVATTFLTLHDSDVFYDLKQMLIQS-------NSPVPPELARHEASKFKPGSIPDRP 620

Query: 400 PQKSTGF 406
           P+++  +
Sbjct: 621 PRRNDTY 627


>gi|255534879|ref|YP_003095250.1| Cold-shock DEAD-box protein A [Flavobacteriaceae bacterium 3519-10]
 gi|255341075|gb|ACU07188.1| Cold-shock DEAD-box protein A [Flavobacteriaceae bacterium 3519-10]
          Length = 571

 Score =  152 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 125/380 (32%), Positives = 213/380 (56%), Gaps = 11/380 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLP 58
           M+ F +  LSP+++ A+ + G+  PT IQ +TIP +     D+  +AQTGTGKTA+F LP
Sbjct: 1   MNLFTETNLSPEILKAIGELGFESPTEIQKQTIPFISTDIRDLIALAQTGTGKTAAFSLP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNK 117
           +L +++ G  +++    L+L PTREL  Q+  + + Y K  N      + GG     Q +
Sbjct: 61  ILDMIDDGSRKIQF---LVLCPTRELCLQITKDIKNYSKYMNNIKTTAVYGGSSITDQIR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L     +++ TPGR++D  NR  L  + I+ LV+DEAD ML MGF   ++ I    P T
Sbjct: 118 SLRDKPQIIVGTPGRVIDLINRKALDFSEIQWLVLDEADEMLSMGFKDDLETILRETPET 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           + T LFSATM  E++++S+++L  P RI V + +   + I+H F     ++ K+      
Sbjct: 178 KHTYLFSATMNKEVERISKSYLTAPHRISVGSINEVKKNIKHEFYVVGYRHKKEALKRLI 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      I+FC  +     +   L + G++  A+HG++ Q  R  ++  F+   I 
Sbjct: 238 DANPNQY---SILFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNID 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  + HV ++ +P+  E ++HR GRTGRAG+ G + +L+  E+ + +
Sbjct: 295 ILVATDVAARGLDVDSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMSLIKPEESRKL 354

Query: 358 DAIEKLIEKKVDWLNGDLSS 377
             I+  +  K+D +   + +
Sbjct: 355 KQIK--MSTKIDIVEKKVPT 372


>gi|219870628|ref|YP_002475003.1| ATP-dependent RNA helicase RhlB [Haemophilus parasuis SH0165]
 gi|219690832|gb|ACL32055.1| ATP-dependent RNA helicase RhlB [Haemophilus parasuis SH0165]
          Length = 406

 Score =  152 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 130/402 (32%), Positives = 204/402 (50%), Gaps = 9/402 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   V+ A+   G+   TPIQ KT+P  L R D+ G AQTGTGKT +F++     
Sbjct: 10  FIDFPIHDSVLAALDSKGFEFCTPIQAKTLPYTLIRQDIAGQAQTGTGKTLAFLVATFHH 69

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                   +   PR LIL PTRELA Q+A +     +  +L +AL  GG  ++ Q +++E
Sbjct: 70  LLNHDIPTKHNQPRALILAPTRELAVQIASDASILTQYADLRLALAYGGDGYDKQLQEIE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P   + 
Sbjct: 130 RGVDILIGTTGRVIDYVKQGIIDLDKIQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEER 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L    + T   +     F       E         T        +   ++    L   L 
Sbjct: 190 LTMLFSATLSHRVRELAFEDMHN-AEYVEIEPLQRTGHRIKEELFYPSNEDKMALLLTLM 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     I+F N K     +   L   G  V  + G+I Q+ R+ +L +F +G + ++V
Sbjct: 249 EEEWPDRCIVFANTKHKCEEIWSYLSADGHRVGLLTGDIPQKKRLALLDSFTQGELDILV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL IPDV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +    ++ AI
Sbjct: 309 ATDVAARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACERYAVNLPAI 368

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           E+ I   +     D   L      + + +   A+   P  +K
Sbjct: 369 EEYIGHAIPVSQYDSEVL------LALPKPQKAKTRTPQGKK 404


>gi|168009544|ref|XP_001757465.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691159|gb|EDQ77522.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 452

 Score =  152 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 142/439 (32%), Positives = 230/439 (52%), Gaps = 7/439 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+  ++  A    G+  PT IQ+  +P+ L+ HD+ G+AQTG+GKTA+F LP+L 
Sbjct: 20  TFRSLGVCEQLAEACDALGWKAPTQIQVDAVPVALKGHDIIGLAQTGSGKTATFALPILQ 79

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    +      +L PTRELA Q+A+ FE  G    L  A+L+GGI   AQ+  L +
Sbjct: 80  ALLENPQPLFA---CVLSPTRELAIQIAEQFEALGSGIGLKCAVLVGGIDMMAQSVALAK 136

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR++DH    K      I+ LV+DEADR+L+M F   I  I  ++P  R+T
Sbjct: 137 RPHVVVGTPGRLVDHLTNTKGFSLRTIKYLVLDEADRLLNMDFEQEIDEILKVIPKERRT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+    L+NP ++EV+   ST +++           +K        + 
Sbjct: 197 YLFSATMTTKVAKLQRACLKNPVKVEVSAKYSTVDSL---KQEYLFIPAKYKDCYLVYIL 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      ++F    +    L   L   GF    I G + Q  R+  L+ FK G   +++
Sbjct: 254 NELAGNTAMVFTRTCEATRKLSLVLRNLGFVAIPISGQMSQPKRLGALAKFKAGDCNILI 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A+RGLDIP V  V N+D+P  +++YIHR+GRT RAGR G+A ++V + D++    I
Sbjct: 314 CTDVASRGLDIPSVNLVINYDIPTNSKDYIHRVGRTARAGRSGRAISMVCQYDVELYQKI 373

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E+LI KK+   +     +   LE++  AQ               G  R   +     +  
Sbjct: 374 EELIGKKLPEFSHQQEEVLLMLERVSEAQRLATMHMREKDGAKKGKRRGHGDDDGDDNRG 433

Query: 421 PLKESEKISKLQQDIQEND 439
           P +  +  ++ ++  +++ 
Sbjct: 434 PGRPEKGGTRPKKQFKKSR 452


>gi|322834951|ref|YP_004214978.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
 gi|321170152|gb|ADW75851.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
          Length = 430

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 129/395 (32%), Positives = 204/395 (51%), Gaps = 8/395 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  L P  V A+   G+   TPIQ   +P+ L   DV G AQTGTGKT +F+     
Sbjct: 10  KFSDFALHPLAVEALEKKGFHYCTPIQALALPITLAGRDVAGQAQTGTGKTLAFLASTFH 69

Query: 62  ILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L         +   PR LI+ PTRELA Q+  + E   ++  L + L  GG  ++ Q K
Sbjct: 70  YLLSHPAAEGRQTNQPRALIMAPTRELAVQIHSDAEALSESTGLKLGLAYGGDGYDKQLK 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D+LI T GR++D+  +  + +  I+++V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 VLESGVDILIGTTGRLIDYTKQNHIDLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L    + T   +     F        +       +T        +   +++   L Q
Sbjct: 190 NQRLNMLFSATLSYRVKELAFENMNNAESI-EIEPEQKTGHRIQEELFYPSNEEKMRLLQ 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     IIF N K    ++   L   G  V  + G++ Q+ R+++L +F +GT+ 
Sbjct: 249 TLIEEEWPDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVPQKKRLRVLEDFTKGTLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +L  +E   ++
Sbjct: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGLSGHSISLACEEYALNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQ 389
            AIE      +     +  +L    PP +++  ++
Sbjct: 369 PAIETYTGHSIPVSKYNSDALLTDLPPAKRLARSR 403


>gi|170701192|ref|ZP_02892163.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170133898|gb|EDT02255.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 542

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 149/370 (40%), Positives = 216/370 (58%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  + D  Y  PTP+Q+K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 62  MSFASLGLIAPLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALPLL 121

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                          R L+L PTRELA QV  +F  YGK  +L      GG+    Q  K
Sbjct: 122 QRLVQHGPVVSSNRARVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMK 181

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + +E LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 182 LRKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPVQR 241

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT TD+++ ++ + L++P  I V+ P+ TA  I+   V    +      +    
Sbjct: 242 QTLLFSATFTDDIRTMAASILRSPVNISVSPPNVTASKIKQWAVTVDKRNKPDLFMHL-- 299

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +++   + ++F   +  V  L   L++ G++V  IHG+  Q +R++ L  FK G +Q+
Sbjct: 300 -VAENNWDHALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQM 358

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 359 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 418

Query: 359 AIEKLIEKKV 368
           AIE LI + +
Sbjct: 419 AIEALIGQTL 428


>gi|332821351|ref|XP_003310755.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 3 [Pan
           troglodytes]
          Length = 704

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 130/422 (30%), Positives = 210/422 (49%), Gaps = 18/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 268 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 327

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             +            ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 328 AHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGH 387

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 388 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPKMKKLISCP 447

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       V    Q+SK
Sbjct: 448 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSK 507

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 508 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 565

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 566 FRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 625

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L      +   LE+I  + +      +         D RK
Sbjct: 626 LESDNH------LAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTRK 679

Query: 411 KN 412
             
Sbjct: 680 GK 681


>gi|332821349|ref|XP_003310754.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 2 [Pan
           troglodytes]
          Length = 575

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 130/422 (30%), Positives = 210/422 (49%), Gaps = 18/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 139 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 198

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             +            ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 199 AHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGH 258

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 259 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPKMKKLISCP 318

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       V    Q+SK
Sbjct: 319 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSK 378

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 379 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 436

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 437 FRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 496

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L      +   LE+I  + +      +         D RK
Sbjct: 497 LESDNH------LAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTRK 550

Query: 411 KN 412
             
Sbjct: 551 GK 552


>gi|332821347|ref|XP_003310753.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 1 [Pan
           troglodytes]
          Length = 690

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 130/422 (30%), Positives = 210/422 (49%), Gaps = 18/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 254 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 313

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             +            ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 314 AHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGH 373

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 374 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPKMKKLISCP 433

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       V    Q+SK
Sbjct: 434 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSK 493

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 494 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 551

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 552 FRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 611

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L      +   LE+I  + +      +         D RK
Sbjct: 612 LESDNH------LAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTRK 665

Query: 411 KN 412
             
Sbjct: 666 GK 667


>gi|289705155|ref|ZP_06501559.1| ATP-dependent RNA helicase DeaD family protein [Micrococcus luteus
           SK58]
 gi|289558183|gb|EFD51470.1| ATP-dependent RNA helicase DeaD family protein [Micrococcus luteus
           SK58]
          Length = 470

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 135/374 (36%), Positives = 202/374 (54%), Gaps = 10/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD G+ PK+V A+   G V P PIQ  T+P+ L  HD+ G A+TGTGKT  F +P L 
Sbjct: 38  TFADFGVHPKIVEALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPALQ 97

Query: 62  ILEKGRARVRM----------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
                                P+ LI+ PTRELA QVA +         L +A + GG  
Sbjct: 98  RAIGPGEPGWDALEAKGTAGAPQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGRA 157

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q ++L+RG ++++ TPGR++D   +  L ++ +  +V+DEAD MLD+GF+P ++ + 
Sbjct: 158 YEPQIEELQRGIEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETLL 217

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           + VP  RQT+LFSATM   +  ++  ++  P  I    P     T +      Y  +   
Sbjct: 218 AAVPAVRQTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHMD 277

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L       +     IIF   K+    +   L  +GF+  A+HG++ Q +R + L  F
Sbjct: 278 KDELVARALQAEGRGRTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALRAF 337

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++VA+D+AARG+D+ DV HVFNF  P   + Y+HR+GRTGRAG  G A TLV  
Sbjct: 338 RNGKVDILVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLVDW 397

Query: 352 EDIKHIDAIEKLIE 365
           ED+     I+K + 
Sbjct: 398 EDMPRWSLIDKALG 411


>gi|256088557|ref|XP_002580397.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665967|emb|CAZ36636.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 1500

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 131/471 (27%), Positives = 233/471 (49%), Gaps = 17/471 (3%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++   G+S +++  +    + KPTPIQ + +P+++   D+ GIA+TG+GKT +F++P++ 
Sbjct: 807  NWVQAGISSRLLACLKRNNFDKPTPIQCQALPVIMSGRDMIGIAKTGSGKTLAFLVPLMR 866

Query: 62   I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                +        P  L+L PTRELA Q+    +K  +  +     + GG     Q  +L
Sbjct: 867  HLEHQAPLNPGDGPIALLLAPTRELALQIFKETKKLCQAADARAVCVYGGTGISEQIAEL 926

Query: 120  ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +RGA++++CTPGR++D           ++    +V+DEADRM D+GF P +  I      
Sbjct: 927  KRGAEIIVCTPGRMIDMLAANGGRVTNLHRCSYVVLDEADRMFDLGFEPQVMRIIENCRP 986

Query: 177  TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             RQTL+FSAT   +++ ++   L  P  I++   S           A      +K   + 
Sbjct: 987  DRQTLMFSATFPRQMEILARKVLTLPIEIQIGGRSVVCSD--VEQHAFILSEEEKVYKVL 1044

Query: 237  QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +LL       + ++F  ++++   L   L K G+   ++HG IDQ  R  ++ +FK G I
Sbjct: 1045 ELLGIYQEEGSVLVFVEKQESADELMRVLLKYGYPCLSLHGGIDQYDRDSVIMDFKRGNI 1104

Query: 297  QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +L++A+ +AARGLD+ D+  V N+D PN  E+Y+HR GRTGRAGR G A+T +  +  + 
Sbjct: 1105 RLLIATSVAARGLDVTDLLLVINYDCPNHYEDYVHRCGRTGRAGRKGFAYTFLTPDQERS 1164

Query: 357  IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK---NNPIPQKSTGFDRRKKNY 413
               + +  ++       +L ++        I   +  +K   ++    K   FD  +   
Sbjct: 1165 AGDVVRAFKQSGQKPPEELMNM---WNAYKIRMEHEGKKVYGSSGFRGKGFMFDEVEAQL 1221

Query: 414  SSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            +S+K  +     +    LQ    E+   S+ +   +   +  K + K   K
Sbjct: 1222 NSEKRRLQ----KAALGLQDSDDEDGDGSVDWDSKIEDMLATKTKIKDVSK 1268


>gi|332821345|ref|XP_517757.3| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 4 [Pan
           troglodytes]
          Length = 724

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 130/422 (30%), Positives = 210/422 (49%), Gaps = 18/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 288 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 347

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             +            ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 348 AHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGH 407

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 408 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPKMKKLISCP 467

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       V    Q+SK
Sbjct: 468 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSK 527

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 528 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 585

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 586 FRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 645

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L      +   LE+I  + +      +         D RK
Sbjct: 646 LESDNH------LAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTRK 699

Query: 411 KN 412
             
Sbjct: 700 GK 701


>gi|185134419|ref|NP_001117665.1| Vasa [Oncorhynchus mykiss]
 gi|6521014|dbj|BAA88059.1| Vasa [Oncorhynchus mykiss]
          Length = 647

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 138/459 (30%), Positives = 226/459 (49%), Gaps = 38/459 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   +  +GY KPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 211 MGFEEAALCESLNRNISKSGYKKPTPVQKHGIPIIAAGRDLMACAQTGSGKTAAFLLPIL 270

Query: 61  TILEK------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + ++ P  +I+ PTREL  Q+     K+     +   ++ GGI    
Sbjct: 271 QQLMVDGVAASQFSEIQEPEVIIVAPTRELINQIYMEARKFAHGTCVRPVVVYGGISTGH 330

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
             +++ +G +VL  TPGR++D   RGK+ ++ +  LV+DEADRMLDMGF P ++      
Sbjct: 331 TIREILKGCNVLCATPGRLMDIIGRGKIGLSKLRYLVLDEADRMLDMGFEPAMRKLVGSP 390

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++QK++ +FL+             A +     V    ++SK
Sbjct: 391 GIPAKEDRQTLMFSATYPEDIQKLAADFLKKDYLFLAVGVVGGACSDVEQVVVQVTKFSK 450

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +       +      +  ++F   K+    +   L ++  +  +IHG+ +QR R + L +
Sbjct: 451 RD--QLLEVLKTTGSERTMVFVETKRQADFIATFLCREKVNTTSIHGDREQREREQALGD 508

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI DV H+ NFD+PN  + Y+HRIGRTGR G  G+A     
Sbjct: 509 FRSGRCPVLVATSVAARGLDIKDVQHIVNFDLPNNIDEYVHRIGRTGRCGNTGRAVCFFD 568

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
              D     ++       V  L+G    +   LE+   + H            +TGF+  
Sbjct: 569 PGADGNLARSL-------VKVLSGAQQEVPKWLEEAAFSAH-----------GTTGFNPG 610

Query: 410 KKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
            + ++S        +S K   LQ+D   + A +L    +
Sbjct: 611 GRTFAS-------TDSRKGGSLQRDGASHLAAALSSGAD 642


>gi|107027528|ref|YP_625039.1| DEAD/DEAH box helicase-like [Burkholderia cenocepacia AU 1054]
 gi|105896902|gb|ABF80066.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
           1054]
          Length = 507

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 152/370 (41%), Positives = 219/370 (59%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  +    Y  PTP+Q K IP+VL   DV   AQTGTGKTA F LP+L
Sbjct: 24  MSFASLGLIEPLLRNLQGLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLL 83

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +    V   R    +L PTRELA QV  +F +YGK  +L      GG+    Q  K
Sbjct: 84  QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMK 143

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 144 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKR 203

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++K++   L++P  I V+ P++TA  I+   V    +      +    
Sbjct: 204 QTLLFSATFSDEIRKMAAGILRSPVDISVSPPNATASKIKQWVVPVDKRNKPDLFMHL-- 261

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +Q+  +  ++F   +  V  L   LEK G++V  IHG+  Q +R++ L  FK G +Q+
Sbjct: 262 -VAQNRWERALVFVKTRNGVDYLALMLEKTGYAVDTIHGDKPQPARLRALERFKTGEVQM 320

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 321 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 380

Query: 359 AIEKLIEKKV 368
           AIE LI + +
Sbjct: 381 AIEALIRQTL 390


>gi|312128901|ref|YP_003996241.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311905447|gb|ADQ15888.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 438

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 134/438 (30%), Positives = 220/438 (50%), Gaps = 21/438 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L+  ++ A+ D  +  PTPIQ K   +++   D+ GIA+TGTGKT +++LP+L
Sbjct: 1   MQFSELNLNKPLLRALEDLQFSSPTPIQEKVFSVLMSGRDLAGIARTGTGKTFAYLLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +    + ++  P+ L+L PTREL  QV ++ +      +  V  + GG+  ++Q  +L 
Sbjct: 61  RMWTFSKDKL--PQILVLVPTRELVMQVVESAKALSTYMSFDVVGVYGGVNMKSQAAELM 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TPGR  D    G L + NI+ LVIDE D MLD+GF P +  I + +P  RQ 
Sbjct: 119 QGCDMVVATPGRFTDLAAAGVLKVKNIKKLVIDEFDMMLDLGFRPQLDLIFNKIPERRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+++E+  +  +  + P  IE +   +  E+I     A     +K   L   L  
Sbjct: 179 LLFSATLSEEVGSLIGDIFKTPIIIEDDDIGTPIESILQKTYAVPNFKTKINLLDLLLGN 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  KN I    +    +       +   SV  IH N  Q  R + + +F +G I+ ++
Sbjct: 239 DPDMQKNLIFVAQKSAADLLFQELKSRGMESVEVIHSNKSQNYRFRAIKSFSDGEIKTLI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D+ +RGLDI  + HV N DVP    +Y+HRIGRTGR G  G A + V+ ++ +    I
Sbjct: 299 STDIGSRGLDIKGITHVVNMDVPTEKTDYVHRIGRTGRGGNSGTAISFVSPKEEEDFAEI 358

Query: 361 EKLIEKKVDWLN---------------GDLSSLNPPLEKID----IAQHNHARKNNPIPQ 401
           E++ + ++  +                 +  S+  P  K D     A H    KN  + +
Sbjct: 359 EEMYQLQLQRIPLPPYLEIEEGLLPFEMEHESIKVPTVKTDANIGAAFHEKLEKNKKVNK 418

Query: 402 KSTGFDRRKKNYSSQKSH 419
           +      +K  Y      
Sbjct: 419 RRDIEAEKKLKYGKSYRK 436


>gi|309810396|ref|ZP_07704230.1| DEAD-box ATP-dependent RNA helicase CshA [Dermacoccus sp. Ellin185]
 gi|308435636|gb|EFP59434.1| DEAD-box ATP-dependent RNA helicase CshA [Dermacoccus sp. Ellin185]
          Length = 537

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 140/398 (35%), Positives = 219/398 (55%), Gaps = 9/398 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD G+ P +V A+ + G V P PIQ  T+P+ L  HD+ G A+TGTGKT  F +P+L+
Sbjct: 33  TFADFGIHPDIVAALEEKGIVHPFPIQAMTLPVALSGHDIIGQARTGTGKTLGFGVPLLS 92

Query: 62  ILEKGRARVR--------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
            +       +         P+ +++ PTRELA QVA + E   K   + +A + GG  FE
Sbjct: 93  RVTAPGETSKAAVPAPEGKPQAMVVVPTRELAVQVASDLEAAAKKRGIRIAQIYGGRAFE 152

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q ++LE+G +V++ TPGRI+D   RG L +  +  LV+DEAD MLD+GF+P ++ I ++
Sbjct: 153 PQVERLEKGVEVIVGTPGRIIDLATRGHLDLAYVGCLVLDEADEMLDLGFLPDVEKILAM 212

Query: 174 VPFTRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            P  RQT+LFSATM   +  ++  ++ Q      +   +S AET  +     Y  ++   
Sbjct: 213 TPGGRQTMLFSATMPGAVVTLARRYMTQPTHIRAMQDDASEAETASNIEQFVYRAHAMDK 272

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             +   +         IIF   K+    +   L  +GF+   +HG++ Q +R + L  F+
Sbjct: 273 VEMLARILQAKDRGLTIIFSRTKRTAAKVSDELISRGFAAAPLHGDLGQGAREQALRAFR 332

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G + ++VA+D+AARG+D+ DV HV N+  P   + Y+HRIGRTGRAG+ G A TLV  +
Sbjct: 333 SGKVDVLVATDVAARGIDVEDVTHVINYQCPEDEKTYVHRIGRTGRAGKTGIAVTLVDWD 392

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           D+     I K ++  +       SS     E ++I  +
Sbjct: 393 DLHRWALINKALDLGIPEPEETYSSSEHLFEDLEIPAN 430


>gi|312074866|ref|XP_003140162.1| ATP-dependent RNA helicase An3 [Loa loa]
 gi|307764673|gb|EFO23907.1| ATP-dependent RNA helicase An3 [Loa loa]
          Length = 603

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 136/433 (31%), Positives = 211/433 (48%), Gaps = 27/433 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L P +   +  +GY KPTP+Q  +IP +L   D+   AQTG+GKTA+F++P++  
Sbjct: 55  FDELQLHPLIQENIKKSGYTKPTPVQKYSIPSLLSCRDLMSCAQTGSGKTAAFLVPVINH 114

Query: 63  LEKGR-------------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIG 108
           + +                R   P  LIL PTRELA Q      K+    N+  A L  G
Sbjct: 115 IIRNESTTMRMPQVMSTSRRTVFPVVLILSPTRELAMQTHKEALKFAYRTNVISAVLYGG 174

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
              +  Q +KL  G  +LI TPGR+LD  ++  + +++   LV+DEADRMLDMGF P I+
Sbjct: 175 RENYRDQVQKLTLGCHLLIATPGRLLDVMSQNVVSLHDCRFLVLDEADRMLDMGFEPQIR 234

Query: 169 NITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
            I       ++      +FSAT   E+Q ++++FL             +        +  
Sbjct: 235 QIVECHSMPKKGQRVTAMFSATFPKEIQILAQDFLMANYVFLAVGRVGSTSENIVQKIIW 294

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
             ++ KK  L++ L    +     ++F   K+   +L   L++  ++V  IHG++ Q  R
Sbjct: 295 VEEHDKKRLLMELLDIDVNRG-LALVFVETKRGANDLAWYLQRNNYNVMPIHGDLKQYER 353

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + L  F+ G   ++VA+ +AARGLDIP+V HV NFD+P   + Y+HRIGRTGRAG  G 
Sbjct: 354 ERHLEMFRSGQTNILVATAVAARGLDIPNVKHVINFDLPTDIDEYVHRIGRTGRAGNIGL 413

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK-NNPIPQKS 403
           A +     +      +       +D L      +   LEK+    +  A K  +  P   
Sbjct: 414 ATSFFTDRNRNISRDL-------MDLLVESNQEVPEWLEKMSRKSYRSASKYYDRTPGGR 466

Query: 404 TGFDRRKKNYSSQ 416
            G    + N +S 
Sbjct: 467 FGGHDHRLNTASN 479


>gi|270009742|gb|EFA06190.1| hypothetical protein TcasGA2_TC009039 [Tribolium castaneum]
          Length = 808

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 119/373 (31%), Positives = 195/373 (52%), Gaps = 5/373 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P+++  +  AG+ +P+PIQ +  P++L   D+ GIAQTGTGKT +F+LP L  ++    +
Sbjct: 234 PEILEEMKKAGFTRPSPIQSQAWPVLLSGEDLIGIAQTGTGKTLAFLLPALIHIDGQNIK 293

Query: 70  VRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
                 P  L++ PT    A   D   K  +   +T   + GG     Q K L  G D++
Sbjct: 294 KSERGGPAVLVMAPT-RELALQIDKEVKKYEYKGITAVCIYGGGNRREQIKVLTDGVDIV 352

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D    G L +  +  +V+DEADRMLDMGF P I+ +   +  TRQT++ SAT
Sbjct: 353 IATPGRLNDLAEAGHLEVKYVTYVVLDEADRMLDMGFEPQIRKVMYSIRPTRQTVMTSAT 412

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
               +++++++++ +P +I V T    A       +       ++         +     
Sbjct: 413 WPPGVRRLAQSYMVDPIQIYVGTLDLAATHTVTQIIEIIPDDDQEKFRTFMNFATNLDPS 472

Query: 247 NGIIFCNQKK-NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
             +I    KK     L   L   G     IHG+ DQ  R + L +  +GT+Q+++A+D+A
Sbjct: 473 EKVIAFCGKKARADELSTELTLAGLQCQTIHGDRDQSDREQALLDIADGTVQILIATDVA 532

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLDI D+ HV N+D P   E Y+HR+GRTGRAG+ GK+ +   + D      +  ++E
Sbjct: 533 SRGLDIDDITHVINYDFPRNIEEYVHRVGRTGRAGKSGKSISYFTRGDWAQAKELIAILE 592

Query: 366 KKVDWLNGDLSSL 378
           +   ++  +L  +
Sbjct: 593 EAQQYVPEELYKM 605


>gi|256088559|ref|XP_002580398.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665968|emb|CAZ36637.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 1476

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 131/471 (27%), Positives = 233/471 (49%), Gaps = 17/471 (3%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++   G+S +++  +    + KPTPIQ + +P+++   D+ GIA+TG+GKT +F++P++ 
Sbjct: 783  NWVQAGISSRLLACLKRNNFDKPTPIQCQALPVIMSGRDMIGIAKTGSGKTLAFLVPLMR 842

Query: 62   I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                +        P  L+L PTRELA Q+    +K  +  +     + GG     Q  +L
Sbjct: 843  HLEHQAPLNPGDGPIALLLAPTRELALQIFKETKKLCQAADARAVCVYGGTGISEQIAEL 902

Query: 120  ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +RGA++++CTPGR++D           ++    +V+DEADRM D+GF P +  I      
Sbjct: 903  KRGAEIIVCTPGRMIDMLAANGGRVTNLHRCSYVVLDEADRMFDLGFEPQVMRIIENCRP 962

Query: 177  TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             RQTL+FSAT   +++ ++   L  P  I++   S           A      +K   + 
Sbjct: 963  DRQTLMFSATFPRQMEILARKVLTLPIEIQIGGRSVVCSD--VEQHAFILSEEEKVYKVL 1020

Query: 237  QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +LL       + ++F  ++++   L   L K G+   ++HG IDQ  R  ++ +FK G I
Sbjct: 1021 ELLGIYQEEGSVLVFVEKQESADELMRVLLKYGYPCLSLHGGIDQYDRDSVIMDFKRGNI 1080

Query: 297  QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +L++A+ +AARGLD+ D+  V N+D PN  E+Y+HR GRTGRAGR G A+T +  +  + 
Sbjct: 1081 RLLIATSVAARGLDVTDLLLVINYDCPNHYEDYVHRCGRTGRAGRKGFAYTFLTPDQERS 1140

Query: 357  IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK---NNPIPQKSTGFDRRKKNY 413
               + +  ++       +L ++        I   +  +K   ++    K   FD  +   
Sbjct: 1141 AGDVVRAFKQSGQKPPEELMNM---WNAYKIRMEHEGKKVYGSSGFRGKGFMFDEVEAQL 1197

Query: 414  SSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            +S+K  +     +    LQ    E+   S+ +   +   +  K + K   K
Sbjct: 1198 NSEKRRLQ----KAALGLQDSDDEDGDGSVDWDSKIEDMLATKTKIKDVSK 1244


>gi|213158663|ref|YP_002319961.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057]
 gi|213057823|gb|ACJ42725.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057]
          Length = 383

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 201/377 (53%), Gaps = 6/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++  A+   G+ + TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 5   FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 63  LEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L     + +     PR LIL PTRELA Q+  + +   K  NL +  L+GG+ F+ Q K+
Sbjct: 65  LLNNPVQEQRFRGEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQ 124

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P  
Sbjct: 125 LDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRK 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q      + T     V     Q              +T        Y    +    L Q
Sbjct: 185 EQRQTLMFSAT-FTYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQ 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  ++ +   +IF N++  V  L   L+K G+ V  + G I Q  R+K+L  FK+G   
Sbjct: 244 DILREEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHN 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +M+A+D+A RG+ +  V HV NF +P ++++Y+HRIGRTGRAG  G + + ++++D  ++
Sbjct: 304 IMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDAFYL 363

Query: 358 DAIEKLIEKKVDWLNGD 374
             IEK I KK+     D
Sbjct: 364 PEIEKAIGKKLPLTRLD 380


>gi|189239274|ref|XP_969642.2| PREDICTED: similar to conserved hypothetical protein [Tribolium
            castaneum]
          Length = 1494

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 119/373 (31%), Positives = 195/373 (52%), Gaps = 5/373 (1%)

Query: 10   PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
            P+++  +  AG+ +P+PIQ +  P++L   D+ GIAQTGTGKT +F+LP L  ++    +
Sbjct: 1096 PEILEEMKKAGFTRPSPIQSQAWPVLLSGEDLIGIAQTGTGKTLAFLLPALIHIDGQNIK 1155

Query: 70   VRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
                  P  L++ PT    A   D   K  +   +T   + GG     Q K L  G D++
Sbjct: 1156 KSERGGPAVLVMAPT-RELALQIDKEVKKYEYKGITAVCIYGGGNRREQIKVLTDGVDIV 1214

Query: 127  ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
            I TPGR+ D    G L +  +  +V+DEADRMLDMGF P I+ +   +  TRQT++ SAT
Sbjct: 1215 IATPGRLNDLAEAGHLEVKYVTYVVLDEADRMLDMGFEPQIRKVMYSIRPTRQTVMTSAT 1274

Query: 187  MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
                +++++++++ +P +I V T    A       +       ++         +     
Sbjct: 1275 WPPGVRRLAQSYMVDPIQIYVGTLDLAATHTVTQIIEIIPDDDQEKFRTFMNFATNLDPS 1334

Query: 247  NGIIFCNQKK-NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              +I    KK     L   L   G     IHG+ DQ  R + L +  +GT+Q+++A+D+A
Sbjct: 1335 EKVIAFCGKKARADELSTELTLAGLQCQTIHGDRDQSDREQALLDIADGTVQILIATDVA 1394

Query: 306  ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
            +RGLDI D+ HV N+D P   E Y+HR+GRTGRAG+ GK+ +   + D      +  ++E
Sbjct: 1395 SRGLDIDDITHVINYDFPRNIEEYVHRVGRTGRAGKSGKSISYFTRGDWAQAKELIAILE 1454

Query: 366  KKVDWLNGDLSSL 378
            +   ++  +L  +
Sbjct: 1455 EAQQYVPEELYKM 1467


>gi|325089715|gb|EGC43025.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Ajellomyces
            capsulatus H88]
          Length = 1199

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 137/482 (28%), Positives = 223/482 (46%), Gaps = 19/482 (3%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
             ++  GL  + +  +    Y  PT IQ + IP ++   DV G+A+TG+GKT +F+LPM  
Sbjct: 565  KWSQCGLGVQTLDVIRKLNYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFR 624

Query: 62   ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   R    +  P  LI+ PTRELA Q+    + + K  NL      GG P + Q  +L
Sbjct: 625  HIMDQRPLENMEGPIGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAEL 684

Query: 120  ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +RGA++++CTPGR++D           +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 685  KRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRILGNVRP 744

Query: 177  TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC---A 233
             RQT+LFSAT    ++ ++   L  P  I V   S  A  I                   
Sbjct: 745  QRQTVLFSATFPRNMEALARKTLAKPVEIIVGGKSVVAPEITQIVEVRNQDTKFVRLLAL 804

Query: 234  LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L +     ++     +IF ++++    L   L  +G+   +IHG  DQ  R   + +FK 
Sbjct: 805  LGELYADDKNEDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIDDFKA 864

Query: 294  GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 865  GVFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 924

Query: 354  IKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARK-------NNPIPQKSTG 405
             ++   I K +++    +   +  L N  +EK+   +   +              ++   
Sbjct: 925  ERYSVDISKALKQSGQPVPEPVQKLVNSFMEKVKAGKEKASGSGFGGKGLERLDQERDAA 984

Query: 406  FDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR---GKLN 462
             +R +K Y + +     +  EK  K      +  +         P   +PK     GK+ 
Sbjct: 985  RNRERKTYKTGEEGEEEEREEKKDKKDDLFSKAASAVQATATPAPTPGVPKGIDLDGKIT 1044

Query: 463  DK 464
              
Sbjct: 1045 VH 1046


>gi|256088555|ref|XP_002580396.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665966|emb|CAZ36635.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 1544

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 131/471 (27%), Positives = 233/471 (49%), Gaps = 17/471 (3%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++   G+S +++  +    + KPTPIQ + +P+++   D+ GIA+TG+GKT +F++P++ 
Sbjct: 851  NWVQAGISSRLLACLKRNNFDKPTPIQCQALPVIMSGRDMIGIAKTGSGKTLAFLVPLMR 910

Query: 62   I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                +        P  L+L PTRELA Q+    +K  +  +     + GG     Q  +L
Sbjct: 911  HLEHQAPLNPGDGPIALLLAPTRELALQIFKETKKLCQAADARAVCVYGGTGISEQIAEL 970

Query: 120  ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +RGA++++CTPGR++D           ++    +V+DEADRM D+GF P +  I      
Sbjct: 971  KRGAEIIVCTPGRMIDMLAANGGRVTNLHRCSYVVLDEADRMFDLGFEPQVMRIIENCRP 1030

Query: 177  TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             RQTL+FSAT   +++ ++   L  P  I++   S           A      +K   + 
Sbjct: 1031 DRQTLMFSATFPRQMEILARKVLTLPIEIQIGGRSVVCSD--VEQHAFILSEEEKVYKVL 1088

Query: 237  QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +LL       + ++F  ++++   L   L K G+   ++HG IDQ  R  ++ +FK G I
Sbjct: 1089 ELLGIYQEEGSVLVFVEKQESADELMRVLLKYGYPCLSLHGGIDQYDRDSVIMDFKRGNI 1148

Query: 297  QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +L++A+ +AARGLD+ D+  V N+D PN  E+Y+HR GRTGRAGR G A+T +  +  + 
Sbjct: 1149 RLLIATSVAARGLDVTDLLLVINYDCPNHYEDYVHRCGRTGRAGRKGFAYTFLTPDQERS 1208

Query: 357  IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK---NNPIPQKSTGFDRRKKNY 413
               + +  ++       +L ++        I   +  +K   ++    K   FD  +   
Sbjct: 1209 AGDVVRAFKQSGQKPPEELMNM---WNAYKIRMEHEGKKVYGSSGFRGKGFMFDEVEAQL 1265

Query: 414  SSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            +S+K  +     +    LQ    E+   S+ +   +   +  K + K   K
Sbjct: 1266 NSEKRRLQ----KAALGLQDSDDEDGDGSVDWDSKIEDMLATKTKIKDVSK 1312


>gi|213405989|ref|XP_002173766.1| ATP-dependent RNA helicase Prp11 [Schizosaccharomyces japonicus
           yFS275]
 gi|212001813|gb|EEB07473.1| ATP-dependent RNA helicase Prp11 [Schizosaccharomyces japonicus
           yFS275]
          Length = 1056

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 199/383 (51%), Gaps = 6/383 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GLS + +  +   G+ +P+ IQ + IP +    DV G+A+TG+GKT +F+LPM  
Sbjct: 460 SWSQCGLSVQTLSVIRSLGFEEPSAIQAQAIPAITAGRDVIGVAKTGSGKTIAFLLPMFR 519

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R       P  +I+ PTRELA Q+    + + K  +L      GG P + Q  +L
Sbjct: 520 HIMDQRPLRNGEGPVAVIMTPTRELAVQIFRECKPFAKALDLRATCAYGGAPIKDQIAEL 579

Query: 120 ERGADVLICTPGRIL---DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++   +  +     ++    +V+DEADRM D+GF P +  I + +  
Sbjct: 580 KRGAEIVVCTPGRMIDVLNANSGRVTNLHRCTYVVLDEADRMFDLGFEPQVMRILNNIRP 639

Query: 177 TRQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            RQ +LFSAT    ++    +   +  +          AE  +   V +      +   L
Sbjct: 640 DRQVVLFSATFPRAMEALARKVLKKPIEITVGGRSVVAAEVEQLVEVRSEESKFPRLLEL 699

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L +       ++F ++ ++   L   L K+G+S  +IHG  DQ  R   +S++K G 
Sbjct: 700 LGELYNTQPDVRTLVFVDRHESADALLSQLMKRGYSCNSIHGGKDQHDRDSTISDYKMGI 759

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +++A+ +AARGLD+  +  V N+D PN  E+Y+HR+GRTGRAG  G A T V  +  +
Sbjct: 760 FDVLIATSVAARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFVTPDQSR 819

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
           +   I K ++     +  +L +L
Sbjct: 820 YAVGIAKALKMSKQPVPLELQNL 842


>gi|164687249|ref|ZP_02211277.1| hypothetical protein CLOBAR_00890 [Clostridium bartlettii DSM
           16795]
 gi|164603673|gb|EDQ97138.1| hypothetical protein CLOBAR_00890 [Clostridium bartlettii DSM
           16795]
          Length = 371

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 128/377 (33%), Positives = 218/377 (57%), Gaps = 6/377 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F DL +S +++  +   G   PTPIQ ++I  +    D+   +QTGTGKT +F++P+ 
Sbjct: 1   MNFKDLKISDELIDTLKKNGIKTPTPIQEESILHIKNNKDILAQSQTGTGKTLAFLIPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     + +  +TLIL PTRELA Q+ +  EK  K+ N+ V    GG   ++Q  KL+
Sbjct: 61  DSI---SPKNQNIQTLILAPTRELAIQIYNEAEKLNKDKNINVLAAYGGKDIKSQLNKLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++I TPGR+LDH +R  + ++ +  LV+DEAD+M+ MGF   I+ I       RQT
Sbjct: 118 RNIQLVIATPGRLLDHLDRKSIDLSKLNTLVLDEADQMILMGFKNEIEAIIKETNKKRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+  +++K++  ++++P  + + +   T ETI+   V T  ++ ++         
Sbjct: 178 LCFSATLDSQVKKLAYRYMKDPVEVTIKSKEITLETIKQEVVETTDRHKQEALCKVLDED 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       IIFC  K+ V  L  +L  +G++   +H +I Q  R +I+ +F++  +Q ++
Sbjct: 238 NPFM---AIIFCRTKRRVDALDEALAVKGYNCEKLHSDIPQAKRERIIKSFRKADLQYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI  + H++N+D+P  +E+YIHRIGRTGR G  G     V  ++ K ++ I
Sbjct: 295 ATDVASRGLDITGITHIYNYDIPETSEDYIHRIGRTGRIGNDGYTCMFVDPKNTKTLEKI 354

Query: 361 EKLIEKKVDWLNGDLSS 377
           E  I+ ++     +L  
Sbjct: 355 ESDIKYEIPRRLVELDK 371


>gi|68069123|ref|XP_676472.1| RNA helicase-1 [Plasmodium berghei strain ANKA]
 gi|56496186|emb|CAH99280.1| RNA helicase-1, putative [Plasmodium berghei]
          Length = 393

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 119/376 (31%), Positives = 197/376 (52%), Gaps = 8/376 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL+ K++  +   G+ KP+ IQ + I  +L+ +D  G AQ+GTGKTA+FV+  L 
Sbjct: 24  TFDALGLNEKLLRGIYSYGFEKPSAIQQRGIKPILKGYDTIGQAQSGTGKTATFVISSLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++          + LIL PTRELA Q+       G    +     +GG        KL++
Sbjct: 84  LINYDY---VACQALILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDIDKLKQ 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D  ++  L ++ +++ ++DEAD ML  GF   I  +   +    Q  
Sbjct: 141 GVHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQVA 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+ +++  F+++PK I V     T E I+        +  +        L  
Sbjct: 201 LFSATMPQEILELTTRFMRDPKTILVKKDELTLEGIQF---YVAVEKEEWKLDTLCDLYE 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   II+CN +K V  L   +  + F+V  +HG++DQ+ R  I+  F+ G+ +++V 
Sbjct: 258 TLTITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVT 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK--EDIKHIDA 359
           +DL ARG+D+  V  V N+D+P   + YIHRIGR+GR GR G A   V    ++   +  
Sbjct: 318 TDLLARGIDVQQVSLVINYDLPCSPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDKLKK 377

Query: 360 IEKLIEKKVDWLNGDL 375
           IE     +++ +  ++
Sbjct: 378 IESYYSTQIEEMPLEV 393


>gi|117921047|ref|YP_870239.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117613379|gb|ABK48833.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 449

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 124/370 (33%), Positives = 186/370 (50%), Gaps = 1/370 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F D  L  +++ ++   G   PT IQ + +P+ L   D+   ++TG+GKT +F+LP M
Sbjct: 1   MQFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAM 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++       R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRVISTRALTKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +    ++ TPGRI DH  +  L +N +E+LV+DEADRMLD+GF P ++ I +     R+
Sbjct: 121 AKEPHFIVATPGRIADHLEQKNLFLNGLELLVLDEADRMLDLGFAPQLKAINAAADHKRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +              V   ++  E  +         +      L   L
Sbjct: 181 QTLMFSATLDHSEINEIAAALLKNPSHVAIGAAHTEHQDITQRIYLCDHLDHKEALLTRL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S +T K  IIF   + +   L   L  QGF+  A+ G + Q +R +I+  F  G  Q++
Sbjct: 241 LSDETHKQVIIFTATRADTERLASKLSAQGFATAALSGELKQAARNQIMDQFARGQQQIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +   
Sbjct: 301 VTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNFKK 360

Query: 360 IEKLIEKKVD 369
           ++  + K  +
Sbjct: 361 VQLFLRKTFE 370


>gi|262231852|ref|NP_001160005.1| probable ATP-dependent RNA helicase DDX4 isoform 3 [Homo sapiens]
          Length = 704

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 130/422 (30%), Positives = 210/422 (49%), Gaps = 18/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 268 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 327

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             +            ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 328 AHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGH 387

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 388 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 447

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       V    Q+SK
Sbjct: 448 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSK 507

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 508 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 565

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 566 FRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 625

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L      +   LE+I  + +      +         D RK
Sbjct: 626 LESDNH------LAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTRK 679

Query: 411 KN 412
             
Sbjct: 680 GK 681


>gi|262118318|ref|NP_001160006.1| probable ATP-dependent RNA helicase DDX4 isoform 4 [Homo sapiens]
          Length = 575

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 130/422 (30%), Positives = 210/422 (49%), Gaps = 18/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 139 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 198

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             +            ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 199 AHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGH 258

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 259 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 318

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       V    Q+SK
Sbjct: 319 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSK 378

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 379 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 436

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 437 FRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 496

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L      +   LE+I  + +      +         D RK
Sbjct: 497 LESDNH------LAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTRK 550

Query: 411 KN 412
             
Sbjct: 551 GK 552


>gi|255079330|ref|XP_002503245.1| predicted protein [Micromonas sp. RCC299]
 gi|226518511|gb|ACO64503.1| predicted protein [Micromonas sp. RCC299]
          Length = 605

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 145/455 (31%), Positives = 232/455 (50%), Gaps = 31/455 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F +L LS  +V A    GY  PTPIQ   +PL L   D+CG A TG+GKTA+F+LP + 
Sbjct: 151 NFTELNLSRPLVKACGALGYASPTPIQAAVVPLALTGRDICGRAVTGSGKTAAFMLPCLE 210

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L +G   V     L+L PTRELA QV    E+  +  ++  AL++GG+    Q   L 
Sbjct: 211 RMLHRGPKPVAATHVLVLVPTRELAVQVHQMTERLAQFTSVRAALVVGGLSANVQATSLR 270

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              +V++ TPGR++DH      +   ++  LV+DEADR+L+MGF+  I+ I    P  RQ
Sbjct: 271 SRPEVVVATPGRLIDHVRNTHSVGLEDLATLVLDEADRLLEMGFLEEIREIVRHCPKRRQ 330

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT+T  +++++E  ++NP R+  +   +T  T+    +      +         +
Sbjct: 331 TMLFSATLTSGVEELAEFSMKNPARLSADQIGTTPGTLTEEVLRLRPGAAAMKEAHLLAI 390

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   K  IIF   K+    L   +   G   C +HG++ Q  R+  L  F+ G    M
Sbjct: 391 VARTFTKRCIIFSRTKQQAHRLKIIMGIHGLKACELHGDLTQTQRLAALEEFRTGEATHM 450

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V ++D P    +Y+HR+GRT RAGR G A T + + D K I A
Sbjct: 451 VATDVAARGLDIAGVDAVVSYDAPRTLASYLHRVGRTARAGRKGTALTFMEESDRKLIKA 510

Query: 360 I----EKLIEKK-----VDWLNGDLSSLNPPLEKIDIAQH-------------------N 391
           +     KL+ +      V+  +  +  +   ++++++ +                     
Sbjct: 511 VSKRGSKLVARSLPTHVVEDFHAKIEGMGEAIKEVEMEERAEKHLARAEMEAIKAENLME 570

Query: 392 HARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESE 426
           H ++ +  PQK T F   ++    QK+ +   E E
Sbjct: 571 HQKEIHSRPQK-TWFQSEREKKLGQKASLKAAERE 604


>gi|216548263|ref|NP_001136021.1| probable ATP-dependent RNA helicase DDX4 isoform 2 [Homo sapiens]
          Length = 690

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 130/422 (30%), Positives = 210/422 (49%), Gaps = 18/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 254 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 313

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             +            ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 314 AHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGH 373

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 374 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 433

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       V    Q+SK
Sbjct: 434 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSK 493

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 494 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 551

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 552 FRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 611

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L      +   LE+I  + +      +         D RK
Sbjct: 612 LESDNH------LAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTRK 665

Query: 411 KN 412
             
Sbjct: 666 GK 667


>gi|193787510|dbj|BAG52716.1| unnamed protein product [Homo sapiens]
          Length = 575

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 130/422 (30%), Positives = 210/422 (49%), Gaps = 18/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 139 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 198

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             +            ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 199 AHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGH 258

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 259 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 318

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       V    Q+SK
Sbjct: 319 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSK 378

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 379 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 436

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 437 FRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 496

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L      +   LE+I  + +      +         D RK
Sbjct: 497 LESDNH------LAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTRK 550

Query: 411 KN 412
             
Sbjct: 551 GK 552


>gi|6808044|emb|CAB70750.1| hypothetical protein [Homo sapiens]
          Length = 635

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 130/422 (30%), Positives = 210/422 (49%), Gaps = 18/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 199 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 258

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             +            ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 259 AHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGH 318

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 319 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 378

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       V    Q+SK
Sbjct: 379 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSK 438

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 439 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 496

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 497 FRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 556

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L      +   LE+I  + +      +         D RK
Sbjct: 557 LESDNH------LAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTRK 610

Query: 411 KN 412
             
Sbjct: 611 GK 612


>gi|13518015|ref|NP_077726.1| probable ATP-dependent RNA helicase DDX4 isoform 1 [Homo sapiens]
 gi|20138033|sp|Q9NQI0|DDX4_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog
 gi|8102021|gb|AAF72705.1| VASA protein [Homo sapiens]
 gi|56789238|gb|AAH88362.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Homo sapiens]
 gi|119575324|gb|EAW54929.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Homo sapiens]
 gi|158258266|dbj|BAF85106.1| unnamed protein product [Homo sapiens]
          Length = 724

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 130/422 (30%), Positives = 210/422 (49%), Gaps = 18/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 288 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 347

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             +            ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 348 AHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGH 407

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 408 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 467

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       V    Q+SK
Sbjct: 468 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSK 527

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 528 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 585

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 586 FRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 645

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L      +   LE+I  + +      +         D RK
Sbjct: 646 LESDNH------LAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTRK 699

Query: 411 KN 412
             
Sbjct: 700 GK 701


>gi|93006300|ref|YP_580737.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5]
 gi|92393978|gb|ABE75253.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5]
          Length = 384

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 129/373 (34%), Positives = 202/373 (54%), Gaps = 9/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
            F DL LS   + AV D G+ + TPIQ K +P  L   D  G AQTGTGKTA+F+L ++ 
Sbjct: 6   TFTDLPLSAATLRAVSDLGFTELTPIQAKILPHTLANQDAIGQAQTGTGKTATFLLTIME 65

Query: 61  -----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                         +  PR +++ PTRELA Q+ D+     K  +L    ++GG  +E Q
Sbjct: 66  ALLKRPFAADEERHLGEPRAVVMAPTRELAQQIFDDCIALTKYTSLHSVCIMGGTNYETQ 125

Query: 116 NKK-LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +   +  D+LI TPGR++D  ++G + ++ +E+LV+DEADRMLDMGFIP I+ +   +
Sbjct: 126 QHELERQYVDILIATPGRLIDLMHKGMVYLDRVEVLVLDEADRMLDMGFIPDIKRLVGRM 185

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P          + T   Q V     +     E        +T E      Y     +   
Sbjct: 186 PPNTDRQSLLFSAT-FNQDVMGLAYRWLHEPEFVEIEPEHKTSELVDQHFYLLTEDQKLE 244

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             + + +  T++  IIF N+K  V  L H L +    V  + G++ Q+ R K L  FK+G
Sbjct: 245 AVERIITDSTVEKVIIFANRKDQVKRLYHKLRQGHKIV-MLSGDVIQQKREKYLQRFKDG 303

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+A RG+ + DV HV N+ +P++ ++Y+HRIGRTGRAG+ G + + V+++D 
Sbjct: 304 HASVLVATDVAGRGIHVDDVSHVINYTLPDQPDDYVHRIGRTGRAGQTGISISFVSEDDA 363

Query: 355 KHIDAIEKLIEKK 367
            +I A+EK ++ K
Sbjct: 364 FNIPALEKHLDTK 376


>gi|46202850|ref|ZP_00052498.2| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 402

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 152/353 (43%), Positives = 220/353 (62%), Gaps = 5/353 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++LGL+  ++ A+   GY  PTPIQ ++IP +LQ  DV G+AQTGTGKTASF LP+L  
Sbjct: 5   FSELGLAEPLLKALEAEGYTTPTPIQEQSIPHLLQGSDVLGLAQTGTGKTASFALPLLQR 64

Query: 63  LEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L++ + R       IL   PTRELA QV  +F+ YG +Y L  AL+ GG+    Q K + 
Sbjct: 65  LDQFKKRAMPKSCRILVLTPTRELAVQVGQSFKTYGCHYRLRHALVFGGVGMVPQIKTMA 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVL+ TPGR+LD  ++G + ++++E LV+DEADRMLDMGFI  I+ I ++VP  RQT
Sbjct: 125 GGVDVLVATPGRLLDLIDQGAIRLDSVEALVLDEADRMLDMGFIQPIRKIVAMVPKQRQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM D +  ++ + L  P R+EV   SST + I+   +    ++ +        + 
Sbjct: 185 VLFSATMPDSIVGLANSVLHTPVRVEVTPVSSTVDKIDQKVLFVDREHKRTL---LTDIL 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   ++F   K     +   LEK G    AIHGN  Q +R K LS+F++G I+ +V
Sbjct: 242 GGADVVRALVFTRTKHGANRVVELLEKAGIDADAIHGNKSQGARQKALSDFRDGKIKALV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           A+D+AARG+D+  + HV NF++PN  E+Y+HRIGRT RAG  G A +L   ++
Sbjct: 302 ATDIAARGIDVDGITHVINFELPNEPESYVHRIGRTARAGASGIALSLCDGDE 354


>gi|171319485|ref|ZP_02908588.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
 gi|171095294|gb|EDT40280.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
          Length = 481

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 150/370 (40%), Positives = 219/370 (59%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  + D  Y  PTP+Q+K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIDPLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +  + V   R    +L PTRELA QV  +F  YGK  +L      GG+    Q  K
Sbjct: 61  QRLVQQGSAVSSNRARVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + +E LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPVQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT TD+++ ++ + L++P  I V+ P+ TA  I+   V    +      +    
Sbjct: 181 QTLLFSATFTDDIRTMAASILRSPVNISVSPPNVTASKIKQWAVTVDKRNKPDLFMHL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +++   + ++F   +  V  L   L++ G++V  IHG+  Q +R++ L  FK G +Q+
Sbjct: 239 -VAENNWDHALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEKKV 368
           AIE LI + +
Sbjct: 358 AIEALIGQTL 367


>gi|50054446|ref|NP_001001910.1| probable ATP-dependent RNA helicase DDX4 [Sus scrofa]
 gi|51315697|sp|Q6GWX0|DDX4_PIG RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog;
           AltName: Full=Vasa-like protein
 gi|48727699|gb|AAT46129.1| VASA-like protein [Sus scrofa]
          Length = 722

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 129/422 (30%), Positives = 206/422 (48%), Gaps = 18/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 286 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 345

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             +            ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 346 AHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGH 405

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 406 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 465

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A            QYSK
Sbjct: 466 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQADLQVGQYSK 525

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +       +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 526 RE--KLLEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 583

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 584 FRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 643

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L      +   LE+I  + +      +         D RK
Sbjct: 644 LESDNH------LAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTRK 697

Query: 411 KN 412
             
Sbjct: 698 GK 699


>gi|14211584|dbj|BAB56110.1| vasa short form [Oreochromis niloticus]
          Length = 621

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 126/389 (32%), Positives = 200/389 (51%), Gaps = 13/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 183 MTFDEAALCESLKRNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 242

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + ++ P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 243 QQLMADGAAASCFSEMQEPDAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGVSTGH 302

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
           Q + L RG +VL  TPGR+LD   RGK+ +  +  LV+DEADRMLDMGF P ++      
Sbjct: 303 QIRDLLRGCNVLCGTPGRLLDMIGRGKVGLTKVRYLVLDEADRMLDMGFEPDMRRLVGSP 362

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++Q+++ +FL+             A +          +++K
Sbjct: 363 GMPSKENRQTLMFSATFPEDIQRLAADFLKTDYLFLAVGIVGGACSDVEQTFVQVTKFAK 422

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L+          +  ++F   K+    +   L ++ F   +IHG+ +Q  R + L +
Sbjct: 423 REQLIDL--LKSTGSERTMVFVETKRQADFIATILCQEKFPTTSIHGDREQWQREQALGD 480

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ + ARGLDIPDV  V NFD+PN  + Y+HRIGRTGR G  G+A +   
Sbjct: 481 FRSGKCSVLVATSVGARGLDIPDVQFVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYD 540

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
              D +   ++  ++ K    +   L   
Sbjct: 541 PGADSELARSLVTILSKAQQEVPSWLEEF 569


>gi|11990882|dbj|BAB19807.1| vasa [Oreochromis niloticus]
          Length = 645

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 126/389 (32%), Positives = 200/389 (51%), Gaps = 13/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 207 MTFDEAALCESLKRNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 266

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + ++ P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 267 QQLMADGAAASCFSEMQEPDAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGVSTGH 326

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
           Q + L RG +VL  TPGR+LD   RGK+ +  +  LV+DEADRMLDMGF P ++      
Sbjct: 327 QIRDLLRGCNVLCGTPGRLLDMIGRGKVGLTKVRYLVLDEADRMLDMGFEPDMRRLVGSP 386

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++Q+++ +FL+             A +          +++K
Sbjct: 387 GMPSKENRQTLMFSATFPEDIQRLAADFLKTDYLFLAVGIVGGACSDVEQTFVQVTKFAK 446

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L+          +  ++F   K+    +   L ++ F   +IHG+ +Q  R + L +
Sbjct: 447 REQLIDL--LKSTGSERTMVFVETKRQADFIATILCQEKFPTTSIHGDREQWQREQALGD 504

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ + ARGLDIPDV  V NFD+PN  + Y+HRIGRTGR G  G+A +   
Sbjct: 505 FRSGKCSVLVATSVGARGLDIPDVQFVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYD 564

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
              D +   ++  ++ K    +   L   
Sbjct: 565 PGADSELARSLVTILSKAQQEVPSWLEEF 593


>gi|114048006|ref|YP_738556.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113889448|gb|ABI43499.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 449

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 186/370 (50%), Gaps = 1/370 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F D  L  +++ ++   G   PT IQ + +P+ L   D+   ++TG+GKT +F+LP +
Sbjct: 1   MQFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++       R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRVISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +    ++ TPGRI DH  +  L +N +E+LV+DEADRMLD+GF P ++ I +     R+
Sbjct: 121 AKEPHFIVATPGRIADHLEQKNLFLNGLELLVLDEADRMLDLGFAPQLKAINAAADHKRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +              V   ++  E  +         +      L   L
Sbjct: 181 QTLMFSATLDHSEINEIAAALLKNPSHVAIGAAHTEHQDITQRIYLCDHLDHKEALLTHL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S +T K  IIF   + +   L   L  QGF+  A+ G + Q +R +I+  F  G  Q++
Sbjct: 241 LSDETHKQVIIFTATRADTERLASKLSAQGFATAALSGELKQAARNQIMDQFARGQQQIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +   
Sbjct: 301 VTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNFKK 360

Query: 360 IEKLIEKKVD 369
           ++  + K  +
Sbjct: 361 VQLFLRKTFE 370


>gi|326524209|dbj|BAJ97115.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 764

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 143/380 (37%), Positives = 217/380 (57%), Gaps = 4/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D G    ++ A+   GY KPT IQ + +P+VL   D+ GIA+TG+GKTA+FVLPM+ 
Sbjct: 215 NFEDCGFPVPLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIV 274

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       +   P  +I  PTRELA Q+    +K+ K YNL VA + GG+    Q K+L
Sbjct: 275 HIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKPYNLQVAAVYGGVSKFEQFKEL 334

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++++ TPGR++D      L M     LV+DEADRM D+GF P I++I   +   RQ
Sbjct: 335 KSGCEIVVATPGRLIDLLKMKALRMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 394

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  ++++++   L +P R+ V    S  E I+       +   K   LL+++ 
Sbjct: 395 TLLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKMP 454

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     ++F  +K  V  + + L + GF V A+HG+ DQ SRM+ L  FK G   ++
Sbjct: 455 GMIDDGD-VLVFATKKARVDEVENQLNQHGFKVAALHGDKDQASRMETLQKFKSGIYHVL 513

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIKHID 358
           VA+D+AARGLDI  +  V NFD+    + +IHRIGRTGRAG + G A+TL+ +++ +   
Sbjct: 514 VATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKESRFAG 573

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +   +      +  +L  L
Sbjct: 574 ELVHSLIAAGQDVPNELMDL 593


>gi|317495876|ref|ZP_07954239.1| DEAD/DEAH box helicase [Gemella moribillum M424]
 gi|316914053|gb|EFV35536.1| DEAD/DEAH box helicase [Gemella moribillum M424]
          Length = 485

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 147/464 (31%), Positives = 239/464 (51%), Gaps = 25/464 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+S K+V ++ +  +V PT IQ +TIP VL   D+   AQTG+GKT +F +P++ 
Sbjct: 3   TFEELGVSSKIVESLTNMNFVSPTGIQTETIPYVLSGIDILAQAQTGSGKTGAFGIPIVD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +     +    ++LIL PTRELA QV +      +   L V+++ GG   E Q + L++
Sbjct: 63  TVR----KTEELQSLILAPTRELAQQVGEQLRLMSRVKGLKVSIIFGGTSIERQIQDLKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++DH NR  + +  +  LV+DEAD ML+MGFI  ++ I S +    QTL
Sbjct: 119 RPQIIVGTPGRVIDHINRKTIRLETLTHLVLDEADEMLNMGFIEDVRFILSKITSRHQTL 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   + ++S++F+++ K +      S  +               +          
Sbjct: 179 LFSATMPKTIMELSKDFMKDYKLV---KTMSDEDLNPDITEFATIARENEKLETLIGFLD 235

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K+ V  L  +L  +G+    +HG+I Q  R++IL  FK  ++Q++VA
Sbjct: 236 VQNPNLAIVFGRTKRRVDELSSALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQILVA 295

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI DV HV+NFD+P   E+Y HRIGRTGRAG+ G A T +   ++ ++  IE
Sbjct: 296 TDVAARGIDISDVTHVYNFDIPQDTESYTHRIGRTGRAGKSGVAVTFLNPIEMPYLKDIE 355

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
               +++  L    S            +   AR N    +  +  D     ++S  + + 
Sbjct: 356 ASRGERMKMLRPYTSE-----------EVKKARYNRMFEEVVSELDNNHVEFNSLANKLM 404

Query: 422 LKESEK------ISKLQQDIQENDADSLGFRGNMPAFMLPKNRG 459
            + + +      +SKL  D +E D + L F   +P       R 
Sbjct: 405 AEANAEKIITVLLSKLINDKKEVDVE-LSFEKPLPRKQEKSRRS 447


>gi|253326818|gb|ACT31323.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Rattus norvegicus]
          Length = 728

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 125/429 (29%), Positives = 213/429 (49%), Gaps = 20/429 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP+VL   D+   AQTG+GKTA+F+LP+L
Sbjct: 288 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPIL 347

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             + +          ++ P  +I+ PTREL  Q+     K+     +   ++ GG  F  
Sbjct: 348 AHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGH 407

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +++ +G ++L  TPGR++D   + K+ +  ++ LV+DEADRMLDMG  P ++ + S  
Sbjct: 408 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGVGPEMKKLISCP 467

Query: 175 PFTRQTLL----FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
               +       FSAT  +E+Q+++  FL++            A       +    QYSK
Sbjct: 468 GMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGQYSK 527

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 528 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 585

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV- 349
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 586 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 645

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            + D      +       V  L+     +   LE+I  + +     +N            
Sbjct: 646 TESDNHLAQPL-------VKVLSDAQQDVPAWLEEIAFSSYAPPSFSNSTRGAVFASVDT 698

Query: 410 KKNYSSQKS 418
           +KN+  + +
Sbjct: 699 RKNFQGKNT 707


>gi|241766543|ref|ZP_04764404.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
 gi|241363218|gb|EER58791.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
          Length = 415

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 142/365 (38%), Positives = 196/365 (53%), Gaps = 6/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F+ LGLSP +V A    G+  PTP+Q   IP VL+  DV G AQTG+GKTA+F LP +
Sbjct: 1   MPFSALGLSPALVQAATAMGFSAPTPVQSAAIPAVLRGADVLGSAQTGSGKTAAFALPLL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNK 117
             +    +   R  R LIL PTRELAAQV +     G+       VA++ GG+    Q  
Sbjct: 61  QRLQADAQNAPRHVRALILVPTRELAAQVGEVIRSLGRGLPQPVKVAVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADV++ TPGR+LD      L + ++E LV+DEADR+LD+GF   +Q I  L+P  
Sbjct: 121 GLRGGADVVVATPGRLLDLVEHNALRLGSVEHLVLDEADRLLDLGFAEELQRILQLLPVR 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT    +Q ++E  L  P R+ V+   +    I     A  AQ   +      
Sbjct: 181 RQNLLFSATFAPAVQALAEGMLHEPVRVTVDDAPANVPAIAQRAFAVDAQRRTQLLRHLV 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                  +   +      ++V      L K G      HG + Q +R ++L  FK+   Q
Sbjct: 241 QEHQWSRVMVFVATQYAAEHVAE---KLYKAGIFATPFHGGLSQGARTQVLQEFKDDRWQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +DLAARG+DI  +  V N+D+P  A++Y+HRIGRTGRAG  G A + V+     H 
Sbjct: 298 VVVTTDLAARGIDIAQLPAVVNYDLPRSADDYVHRIGRTGRAGESGVAVSFVSAATEAHF 357

Query: 358 DAIEK 362
             IEK
Sbjct: 358 RLIEK 362


>gi|27367363|ref|NP_762890.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|27358932|gb|AAO07880.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
          Length = 398

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 149/403 (36%), Positives = 223/403 (55%), Gaps = 7/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   +  A+   GY KPT IQ + IP++L+  D+   AQTGTGKTASFVLPML
Sbjct: 1   MSFTQLGLCASLTDAIDTLGYPKPTRIQTQAIPVILEGRDLIAAAQTGTGKTASFVLPML 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G+  + +  R LIL PTRELA QV +  ++YG+N  L    + GG+  +AQ + L
Sbjct: 61  EKLRHGQTQKKKRIRALILVPTRELAIQVDEKIKQYGQNLALRSLAMFGGVDEKAQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +    IE+LV+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IEGLDILVATPGRLLDMYGQRAVYFEEIEMLVLDEADRMLDMGFIDDINKILDRLPENIQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++++++ ++++ + NP  I +    ++   IE   +                 
Sbjct: 181 HLLFSATLSNKVRDLAKSAIHNPFEISIAAKQASKSNIEQWIITVDKDQKSALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++     +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 238 IKENQWDQTLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLEDFKAGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A +LV+K++ K++  
Sbjct: 298 VSTGVAARGIDIEALPRVVNYDLPFPADEYVHRIGRTGRANAKGEAISLVSKDNFKNLCM 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE-KIDIAQHNHARKNNPIPQ 401
           IE  +   ++    ++    P     I I  +    K N  P+
Sbjct: 358 IESRLGHLLER--REVEGFTPKKAVPISILNYVPKHKRNNQPE 398


>gi|168828898|gb|ACA33927.1| vasa [Salvelinus leucomaenis]
          Length = 662

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 140/459 (30%), Positives = 227/459 (49%), Gaps = 38/459 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GY KPTP+Q   IP++    D+   AQTG+GKT +F+LP+L
Sbjct: 226 MGFEEAALCESLNRNVSKSGYKKPTPVQKHGIPIIAAGRDLMACAQTGSGKTVAFLLPIL 285

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + V+ P  +I+ PTREL  Q+     K+     +   ++ GGI    
Sbjct: 286 QQLMVDGVAASKFSEVQEPEVIIVAPTRELINQIYMEARKFAHGTCVRPVVVYGGISTGH 345

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT--- 171
             +++ +G +VL  TPGR++D   RGK+ ++ +  LV+DEADRMLDMGF P ++N+    
Sbjct: 346 TIREILKGCNVLCGTPGRLMDIIGRGKIGLSKLRYLVLDEADRMLDMGFEPAMRNVVGSP 405

Query: 172 -SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++QK++ +FL+             A +     V    ++SK
Sbjct: 406 GMPAKEDRQTLMFSATYPEDIQKLAGDFLKKDYLFLAVGVVGGACSDVEQVVVQVTKFSK 465

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +       +      +  ++F   K+    +   L ++  +  +IHG+ +QR R + L +
Sbjct: 466 RD--QLLEVLKTTGSERTMVFVETKRQADFIATFLCQEKVNTTSIHGDREQREREQALGD 523

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI DV H+ NFD+PN  + Y+HRIGRTGR G  G+A     
Sbjct: 524 FRSGKCPVLVATSVAARGLDIKDVQHIVNFDLPNNIDEYVHRIGRTGRCGNTGRAVCFFD 583

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            E D     ++       V  L+G    +   LE+   + H            +TGF+  
Sbjct: 584 PEADSNLARSL-------VKVLSGAQQEVPKWLEEAAFSAH-----------GTTGFNPG 625

Query: 410 KKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
            + ++S        +S K    Q+D   + A +L    +
Sbjct: 626 GRIFAS-------TDSRKGGSFQRDGASHLAAALSSGAD 657


>gi|319427542|gb|ADV55616.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 469

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 145/404 (35%), Positives = 226/404 (55%), Gaps = 10/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P+++  +   GY + TPIQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 12  MAFSTLKLKPELLENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLL 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L+  R R++   TL+L PTRELA QVA       +  +    L +  G+P   Q   L
Sbjct: 72  NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH +R +L ++N+ +LV+DEADRML+MGF P +  I    P  RQ
Sbjct: 129 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +++Q +++  + +P    +       +++       +    K      QLL
Sbjct: 189 TLLFSATFPEQIQSIAKQIMYDPS---MVKVEGNHDSLSIAQHFYHLDDDKARMQALQLL 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ ++FCN K+    +   LE  GFSV A+HG+++QR R + L  F   +  ++
Sbjct: 246 LLEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  VFN+ V    E +IHRIGRTGRAG  G A+T    +D   I  
Sbjct: 306 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIAL 365

Query: 360 IEKLIEKKV--DWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIP 400
           +E+ +E+++  + L  + L    P    +   Q +  +K    P
Sbjct: 366 LEEYLEREITSESLPSESLLGSTPAAPTMITLQIDGGKKEKLRP 409


>gi|255083352|ref|XP_002504662.1| predicted protein [Micromonas sp. RCC299]
 gi|226519930|gb|ACO65920.1| predicted protein [Micromonas sp. RCC299]
          Length = 462

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 135/391 (34%), Positives = 212/391 (54%), Gaps = 8/391 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++ G S  V+ A   A + KP+PIQ ++ P+VL  HD+ GIA TG+GKT +F LP ++
Sbjct: 51  EFSEAGFSKDVLAA--TANFKKPSPIQAQSWPIVLSGHDMVGIAATGSGKTMAFGLPALM 108

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL + +     P+ L+L PTRELA Q A  FE  G    +    + GG P   Q K ++
Sbjct: 109 QILAQPKCAPGSPQCLVLAPTRELAQQTAKVFEDAGTACGVRCVCVYGGAPKWEQKKLMQ 168

Query: 121 RG--ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +G    V++ TPGR+ D  N G + ++ + +LV+DEADRMLD+GF P I+ I       R
Sbjct: 169 QGGGCAVIVATPGRLRDFMNDGDVKLDKVTMLVLDEADRMLDLGFEPEIREIAGKTRADR 228

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA---LL 235
           QT++FSAT    +Q ++  F+ NP ++ +      A       V       K      +L
Sbjct: 229 QTVMFSATWPTSIQGLAAEFMCNPVKVRIGAEGLKASHSVTQVVEVVEPNEKDAHLARVL 288

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++ L  +  +   ++F   KK    L  +L +Q +    IHG++ QR R   +  FK G+
Sbjct: 289 KKYLGGKKPVPRTLVFALYKKECARLHENLRRQNWQAACIHGDMSQRDRELSVEAFKSGS 348

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             L++A+D+AARGLDI  V +V N+  P   E+Y+HRIGRTGRAG+ G A T   + D  
Sbjct: 349 SPLLIATDVAARGLDIKGVEYVINYTFPLTTEDYVHRIGRTGRAGQTGLAHTFFTQHDKA 408

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
               +  ++ +    +   L++    ++K +
Sbjct: 409 RAGELANVLREAGAEVPTALTAFGTHVKKKE 439


>gi|196015847|ref|XP_002117779.1| hypothetical protein TRIADDRAFT_51106 [Trichoplax adhaerens]
 gi|190579664|gb|EDV19755.1| hypothetical protein TRIADDRAFT_51106 [Trichoplax adhaerens]
          Length = 569

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 128/390 (32%), Positives = 201/390 (51%), Gaps = 16/390 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++ ++   G   PTPIQI+ IP VL   D+ GIA TG+GKT  F LP++ 
Sbjct: 129 TFKEMKFPKSIIHSLKKQGITHPTPIQIQGIPAVLFGRDMIGIAFTGSGKTLVFTLPLIM 188

Query: 62  ILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGK------NYNLTVALLIGGI 110
              +        R   P  LI+ P+RELA Q  +  +++ +      +  +   L IGGI
Sbjct: 189 FALEQETGLPFVRNEGPYGLIMCPSRELARQTYNTIKRFCQALTADGHPEIRTMLCIGGI 248

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q   + RG  + + TPGR++D  ++  L ++    L IDEADRM+DMGF   ++ +
Sbjct: 249 SMKEQTDAMRRGVHIAVATPGRLMDMLDKKYLSLDICRYLAIDEADRMIDMGFEEDMRTV 308

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 309 FSYFKAQRQTLLFSATMPKKIQN----FAKSALVRPVTVNVGRAGAANLDVIQEVEYVKQ 364

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +KK+V ++   L  +G    AIHG  DQ  R   +++
Sbjct: 365 EAKIVYLLECLQKTGPPVLIFAEKKKDVDDIHEYLLLKGVEAVAIHGGKDQEEREFAITS 424

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK     +++A+D+A++GLD PDV HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 425 FKLSKKDVLIATDVASKGLDFPDVKHVINYDMPEDIENYVHRIGRTGRCGKTGLATTFIN 484

Query: 351 KEDIKH-IDAIEKLIEKKVDWLNGDLSSLN 379
           K   ++ +  ++ L+ +    L   L +L 
Sbjct: 485 KSSSEYVLLDLKHLLIEAKQKLPPFLLTLQ 514


>gi|119500728|ref|XP_001267121.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
 gi|143359899|sp|A1CX72|PRP28_NEOFI RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|119415286|gb|EAW25224.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
          Length = 796

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 136/436 (31%), Positives = 223/436 (51%), Gaps = 34/436 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            + + GL  +++  V   GY +PTPIQ   IP+ LQ  D+ G+A TG+GKTASF+LP   
Sbjct: 365 SWEESGLPKRLLELVDQVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLV 424

Query: 59  ----MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
               +  I E    +   P  ++L PTRELA Q+     K+ +     V  ++GG  FE 
Sbjct: 425 YISELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEE 484

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT--- 171
           Q   L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I    
Sbjct: 485 QAYSLRNGAEIIIATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 544

Query: 172 -----------------SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA 214
                                  RQT++++ATM   +++++  +L+ P  + + +     
Sbjct: 545 PVTNEKPDTEEAENSAAMRSHRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGSAGEAV 604

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +T+    V   A   K+   L  +L S +     I+F N K+N   +   +++ GFS   
Sbjct: 605 DTV-EQRVEMIAGEDKRKKRLADILSSGEFRPPIIVFVNIKRNCDAIAREIKQMGFSSVT 663

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++ N  E+Y HRIG
Sbjct: 664 LHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIG 723

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           RTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ    R
Sbjct: 724 RTGRAGKSGVAITFLGNEDADVMYDLKQML------MKSPISRVPEELRKHEAAQSKPNR 777

Query: 395 KNNPIPQKSTGFDRRK 410
                   S+GF  + 
Sbjct: 778 GFAKKSDDSSGFGNKS 793


>gi|120597664|ref|YP_962238.1| ATP-dependent RNA helicase DbpA [Shewanella sp. W3-18-1]
 gi|120557757|gb|ABM23684.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 458

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 145/404 (35%), Positives = 226/404 (55%), Gaps = 10/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P+++  +   GY + TPIQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 1   MAFSTLKLKPELLENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L+  R R++   TL+L PTRELA QVA       +  +    L +  G+P   Q   L
Sbjct: 61  NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH +R +L ++N+ +LV+DEADRML+MGF P +  I    P  RQ
Sbjct: 118 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +++Q +++  + +P    +       +++       +    K      QLL
Sbjct: 178 TLLFSATFPEQIQSIAKQIMYDPS---MVKVEGNHDSLSIAQHFYHLDDDKARMQALQLL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ ++FCN K+    +   LE  GFSV A+HG+++QR R + L  F   +  ++
Sbjct: 235 LLEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  VFN+ V    E +IHRIGRTGRAG  G A+T    +D   I  
Sbjct: 295 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIAL 354

Query: 360 IEKLIEKKV--DWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIP 400
           +E+ +E+++  + L  + L    P    +   Q +  +K    P
Sbjct: 355 LEEYLEREITSESLPSESLLGSTPAAPTMITLQIDGGKKEKLRP 398


>gi|327275873|ref|XP_003222696.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Anolis
           carolinensis]
          Length = 924

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 219/379 (57%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + IP+ +   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGIPVAMSGRDMIGIAKTGSGKTAAFIWPMLI 313

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L
Sbjct: 314 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 373

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   ++++ S V   RQ
Sbjct: 374 QEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSVASHVRPERQ 433

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E I        +  +K   L  +L+
Sbjct: 434 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDITQIVEIFASGPNKWNWLTSRLV 493

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + ++F  +K N   L ++L+++G S+  +HG++DQ  R K++S+FK+G   ++
Sbjct: 494 EFTSSG-SVLLFVTKKANAEELANNLKQEGHSLGLLHGDMDQSERNKVISDFKKGAFPVL 552

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTHKDSNFAGD 612

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + + +E     ++ +L  L
Sbjct: 613 LVRNLEGANQNVSKELLDL 631


>gi|124491306|gb|ABN12944.1| Lia2p [Tetrahymena thermophila]
          Length = 522

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 143/414 (34%), Positives = 219/414 (52%), Gaps = 10/414 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + + D      ++  V  A + KP+PIQ    P+VL  HD+ GIA+TG+GKT SF+LP  
Sbjct: 25  LSWTDTHFPQYIMNEVTHAKFEKPSPIQSLAFPVVLSGHDLIGIAETGSGKTLSFLLPSI 84

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +    +    +   P  L+L PTRELA Q+    E++GK+  L  A + GG    +Q   
Sbjct: 85  VHINAQPTVKKGDGPIVLVLAPTRELAMQIERESERFGKSSKLKCACIYGGADKYSQRAL 144

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G DV+I TPGR++D        +  +  LV+DEADRMLDMGF   I+ I   +   R
Sbjct: 145 LQQGVDVVIATPGRLIDFLESETTTLRRVTYLVLDEADRMLDMGFEIQIRKILGQIRPDR 204

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT    +Q +++++ +N            A       +      SKK   L + 
Sbjct: 205 QTLMFSATWPKNVQNLAQDYCKNTPVYVQIGKHELAINERIKQIVYVTDQSKKINQLIKQ 264

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L         +IF   KK   ++   L K+GF   AIHG+  Q+ R  +++ FK G  ++
Sbjct: 265 LDCLTQKDKVLIFAQTKKGCESMSRILNKEGFKCLAIHGDKAQKDRDYVMNKFKSGECRI 324

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+A+RGLD+ DV HVFN+D P   E+Y+H IGRTGRAG +G A + +  ED K   
Sbjct: 325 LIATDVASRGLDVKDVSHVFNYDFPKVMEDYVHSIGRTGRAGAYGCAVSFLTFEDDK--- 381

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
              K+  + V  L+     +  P++ +D+A  N   +       S+ +D +K N
Sbjct: 382 ---KISREYVQMLHDAKQEI--PIDLLDLASINPRYRTQYKTVSSSYYDIKKFN 430


>gi|154416622|ref|XP_001581333.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121915559|gb|EAY20347.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 541

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 117/367 (31%), Positives = 186/367 (50%), Gaps = 1/367 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF   G+  +V+  V   GY  PTP+Q  +IP +L   D+   +QTG+GKTA+F+LP++
Sbjct: 121 IDFPGCGIRNEVLRNVAHNGYKVPTPVQRYSIPYILNGEDLIVTSQTGSGKTAAFMLPVI 180

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T L  G      P  + L PTRELA Q+ +   K+ K  +L    + GG P   Q + L 
Sbjct: 181 TQL-IGTCHSPNPSCVALCPTRELAIQIFEETRKFCKGTDLKTTCVFGGAPITEQIRNLS 239

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D++I TPGR++D   +  + ++ +  L++DEADRMLDMGF P +Q + +        
Sbjct: 240 RGIDIVIATPGRLIDILKQHCITLSEVRFLILDEADRMLDMGFEPQMQEVINGWDMPPAD 299

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
              +   +        N  ++  R +    S   +         +   S+     + L  
Sbjct: 300 DRQTMLFSATFPDAVRNLARDFMRPKYCRISVGMQDAPKSIEQRFIYCSEMDKFSELLGV 359

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     ++F  +K +V  +   L  +  +V AIHG      R+  L  F  G   +MV
Sbjct: 360 IKEVDGPTLVFAERKVSVDRIERFLYDEHTAVVAIHGERQMDQRLAALRQFTTGRANIMV 419

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI +V HV N D+P   + Y HRIGRTGRAG+HG A +   + +   +  +
Sbjct: 420 ATDVASRGLDISNVAHVINLDLPTDLDTYTHRIGRTGRAGKHGLATSFFNESNNAFLAQL 479

Query: 361 EKLIEKK 367
            + +  K
Sbjct: 480 IQHLRSK 486


>gi|321252102|ref|XP_003192288.1| pre-mRNA splicing factor [Cryptococcus gattii WM276]
 gi|317458756|gb|ADV20501.1| pre-mRNA splicing factor, putative [Cryptococcus gattii WM276]
          Length = 1063

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 119/387 (30%), Positives = 196/387 (50%), Gaps = 9/387 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           ++   GL    +  +   G+  PT IQ + IP ++   DV GIA+TG+GKT +F+LPM  
Sbjct: 395 NWGAFGLPQGCLDVIKHQGWETPTSIQAQAIPAIMSGRDVIGIAKTGSGKTVAFLLPMLR 454

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               ++  +    P  ++L PTRELA Q+    + + K  N+  +  +GG         +
Sbjct: 455 HVRDQRPVSGSEGPIAVVLSPTRELATQIYKECQPFLKVLNIRASCCVGGSSISEDIAAM 514

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++GA+V+ICTPGR++D     N     +     +V+DEADRM DMGF P +  I + V  
Sbjct: 515 KKGAEVVICTPGRMIDLLTANNGRVTNVRRTTYIVMDEADRMFDMGFEPQVMKIINNVRP 574

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q +LFSAT    ++ ++   L  P  I V   S  A  I+               L  
Sbjct: 575 NAQKVLFSATFPKTMESLARKILVKPLEITVGGRSVVAPEIDQRVEVRDGDTKFTRLLEI 634

Query: 237 QLLQSQDT----MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                ++         +IF +++++  +L   L ++G+   ++HG  +Q  R + + NFK
Sbjct: 635 LGEMGEEHKDEDDFRALIFVDRQESADDLFRELLQRGYVCASLHGGKEQVDRDEAIKNFK 694

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G + ++VA+ +AARGLD+ ++  V N+D PN  E+Y+HR GRTGRAG  G   T +  E
Sbjct: 695 NGDVPIIVATSVAARGLDVKELKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCITFITPE 754

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLN 379
             +    I + +E    ++  DL  ++
Sbjct: 755 QERFSVDIVRALEASKAFIPDDLKQMS 781


>gi|293609547|ref|ZP_06691849.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827999|gb|EFF86362.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325122816|gb|ADY82339.1| ATP-dependent RNA helicase RhlB [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 389

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 201/377 (53%), Gaps = 6/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++  A+   G+ + TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 11  FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 70

Query: 63  LEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L     + +     PR LIL PTRELA Q+  + +   K  NL +  L+GG+ F+ Q K+
Sbjct: 71  LLNNPIQEQRFRGEPRALILAPTRELALQIESDAKFLTKFSNLHLVTLLGGVDFDKQKKQ 130

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P  
Sbjct: 131 LDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRK 190

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q      + T     V     Q              +T        Y    +    L Q
Sbjct: 191 EQRQTLMFSAT-FSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQ 249

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  ++ +   +IF N++  V  L   L+K G+ V  + G I Q  R+K+L  FK+G   
Sbjct: 250 DILREEPIDKVMIFANRRDQVRRLYDHLKKDGYRVGMLSGEIAQDKRLKMLEQFKQGKHN 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +M+A+D+A RG+ +  V HV NF +P ++++Y+HRIGRTGRAG  G + + ++++D  ++
Sbjct: 310 IMIATDVAGRGIHVDGVSHVINFTLPEQSDDYVHRIGRTGRAGSQGVSISFLSEDDAFYL 369

Query: 358 DAIEKLIEKKVDWLNGD 374
             IEK I KK+     D
Sbjct: 370 PEIEKAIGKKLPLTRLD 386


>gi|159131126|gb|EDP56239.1| DEAD/DEAH box RNA helicase [Aspergillus fumigatus A1163]
          Length = 1211

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 130/439 (29%), Positives = 212/439 (48%), Gaps = 18/439 (4%)

Query: 1    MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            M ++  GL  + +  +   GY  PT IQ + IP ++   DV G+A+TG+GKT +F++PM 
Sbjct: 575  MKWSQCGLGVQTLDVIQKLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMF 634

Query: 61   TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
              +   R    +  P  LI+ PTRELA Q+  + + + K  NL      GG P + Q  +
Sbjct: 635  RHIRDQRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAE 694

Query: 119  LERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            L+RGA++++CTPGR++D           +  +  +V+DEADRM DMGF P +  I + + 
Sbjct: 695  LKRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIR 754

Query: 176  FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC--- 232
              RQT+LFSAT    ++ ++   L  P  I V   S  A  I                  
Sbjct: 755  PDRQTVLFSATFPRNMEALARKSLTKPIEIVVGGKSVVAPEITQIVEVRNEDTKFVRLLE 814

Query: 233  ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L        +     +IF ++++    L   L ++G+   +IHG  DQ  R   + +FK
Sbjct: 815  ILGNLYSDDANEDARALIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFK 874

Query: 293  EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
             G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + +E
Sbjct: 875  AGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEE 934

Query: 353  DIKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
              ++   I K + +    +   +  + +  LEK+   +   +         ++GF  +  
Sbjct: 935  QERYSVDIAKALRQSGQKVPEPVQKMVDSFLEKVKAGKEKAS---------ASGFGGKGL 985

Query: 412  NYSSQKSHIPLKESEKISK 430
                Q+         +  K
Sbjct: 986  ERLDQERDAARMRERRTYK 1004


>gi|123966425|ref|YP_001011506.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9515]
 gi|123200791|gb|ABM72399.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9515]
          Length = 595

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 144/404 (35%), Positives = 218/404 (53%), Gaps = 16/404 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G +  ++ ++ + GY  PTPIQ   IP ++   D+ G AQTGTGKTA+F LP++  
Sbjct: 53  FACFGFNKLILNSLENKGYKIPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPIIEK 112

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121
           LE    +    + L++ PTRELA QVAD+F+ Y  ++ NL    + GG  F  Q   L+R
Sbjct: 113 LENN--KESNAKVLVMTPTRELATQVADSFKSYSVESTNLRTLAIYGGTDFRNQISSLKR 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DV++ TPGRI+DH  +G   +NNI  LV+DEAD ML MGF+  I+ I   +P  +Q +
Sbjct: 171 KTDVVVGTPGRIMDHIRQGTFKINNINCLVLDEADEMLKMGFLEDIEWIIDKLPENKQMV 230

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +E++ +++ +L +P  I + +     +         Y    +   L       
Sbjct: 231 LFSATMPNEIRNIAKKYLNDPAEILIKS----VKKETQLITQRYINVQRHHKLEALKRIL 286

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T +  IIF   K    ++  +LE  G SV  ++G+I Q  R   +   K+G I ++VA
Sbjct: 287 EITNEGVIIFVRTKLLTTSIAEALENSGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVA 346

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D P   E Y HRIGRTGRAGR G+A   V + +   +  +E
Sbjct: 347 TDVAARGLDVERIKLVINYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLE 406

Query: 362 KLIEKKVDWLNGD---------LSSLNPPLEKIDIAQHNHARKN 396
                K++ +            +  L   L +I +AQ N+  K 
Sbjct: 407 NSTRNKIEEIEIPNNKLINEKRMGKLISNLNEISLAQENNEEKK 450


>gi|47217820|emb|CAG07234.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 737

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 139/413 (33%), Positives = 227/413 (54%), Gaps = 8/413 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 102 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGSGKTAAFIWPMLV 161

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK Y+L    + GG     Q K L
Sbjct: 162 HIMDQKELEAGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRSVAVYGGGSMWEQAKAL 221

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 222 QEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 281

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   ++++++ + L +P R+         E +        +   K   L ++L+
Sbjct: 282 TLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQVVELLLSGSDKWSWLTRRLV 341

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   +  + +IF  +K N   L  +L ++G+S+  +HG++DQ  R K++S+FK+  + ++
Sbjct: 342 EFTSSG-SVLIFVTKKTNSEELATNLTQEGYSLGLLHGDMDQSERNKVISDFKKSNMPIL 400

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 401 VATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTSKDSSFAGD 460

Query: 360 IEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           + + +E     ++ +L  L   NP   K         + N  I     G+  R
Sbjct: 461 LVRNLEGANQAVSKELMDLAMQNPWFRKSRFKAGKGKKPN--IGGGGLGYKER 511


>gi|70995215|ref|XP_752371.1| DEAD/DEAH box RNA helicase [Aspergillus fumigatus Af293]
 gi|74672743|sp|Q4WT99|PRP5_ASPFU RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|66850006|gb|EAL90333.1| DEAD/DEAH box RNA helicase [Aspergillus fumigatus Af293]
          Length = 1211

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 130/439 (29%), Positives = 212/439 (48%), Gaps = 18/439 (4%)

Query: 1    MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            M ++  GL  + +  +   GY  PT IQ + IP ++   DV G+A+TG+GKT +F++PM 
Sbjct: 575  MKWSQCGLGVQTLDVIQKLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMF 634

Query: 61   TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
              +   R    +  P  LI+ PTRELA Q+  + + + K  NL      GG P + Q  +
Sbjct: 635  RHIRDQRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAE 694

Query: 119  LERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            L+RGA++++CTPGR++D           +  +  +V+DEADRM DMGF P +  I + + 
Sbjct: 695  LKRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIR 754

Query: 176  FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC--- 232
              RQT+LFSAT    ++ ++   L  P  I V   S  A  I                  
Sbjct: 755  PDRQTVLFSATFPRNMEALARKSLTKPIEIVVGGKSVVAPEITQIVEVRNEDTKFVRLLE 814

Query: 233  ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L        +     +IF ++++    L   L ++G+   +IHG  DQ  R   + +FK
Sbjct: 815  ILGNLYSDDANEDARALIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFK 874

Query: 293  EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
             G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + +E
Sbjct: 875  AGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEE 934

Query: 353  DIKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
              ++   I K + +    +   +  + +  LEK+   +   +         ++GF  +  
Sbjct: 935  QERYSVDIAKALRQSGQKVPEPVQKMVDSFLEKVKAGKEKAS---------ASGFGGKGL 985

Query: 412  NYSSQKSHIPLKESEKISK 430
                Q+         +  K
Sbjct: 986  ERLDQERDAARMRERRTYK 1004


>gi|320159208|ref|YP_004191586.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
 gi|319934520|gb|ADV89383.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
          Length = 398

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 149/403 (36%), Positives = 223/403 (55%), Gaps = 7/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   +  A+   GY KPT IQ + IP++L+  D+   AQTGTGKTASFVLPML
Sbjct: 1   MSFTQLGLCASLTDAIDTLGYPKPTRIQTQAIPVILEGRDLIAAAQTGTGKTASFVLPML 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G+  + +  R LIL PTRELA QV +  ++YG+N  L    + GG+  +AQ + L
Sbjct: 61  EKLRHGQTQKKKRTRALILVPTRELAIQVDEKIKQYGQNLALRSLAMFGGVDEKAQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +    IE+LV+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IEGLDILVATPGRLLDMYGQRAVYFEEIEMLVLDEADRMLDMGFIDDINKILDRLPENIQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++++++ ++++ + NP  I +    ++   IE   +                 
Sbjct: 181 HLLFSATLSNKVRDLAKSAIHNPFEISIAANQASKSNIEQWIITVDKDQKSALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++     +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 238 IKENQWDQTLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLEDFKAGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A +LV+K++ K++  
Sbjct: 298 VSTGVAARGIDIEALPRVVNYDLPFPADEYVHRIGRTGRANAKGEAISLVSKDNFKNLCM 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE-KIDIAQHNHARKNNPIPQ 401
           IE  +   ++    ++    P     I I  +    K N  P+
Sbjct: 358 IESRLGHLLER--REVEGFTPKKAVPISILNYVPKHKRNNQPE 398


>gi|229917498|ref|YP_002886144.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
 gi|229468927|gb|ACQ70699.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
          Length = 481

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 136/419 (32%), Positives = 235/419 (56%), Gaps = 15/419 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  LS ++  A+    Y  PT +Q + IP  L+R D+   AQTG+GKTA+F +P++ 
Sbjct: 5   QFTDYRLSDEITRALGIMKYESPTEVQQQVIPRALEREDLVVKAQTGSGKTAAFGIPVIE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    +   P+ L+L PTRELA QV ++    G+   +    + G  PF  Q ++L++
Sbjct: 65  LIDWAENK---PQVLVLTPTRELAVQVREDMTNIGRFKRIKATAVYGKEPFSKQREELKQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++DH  R  L ++ IE L+IDEAD ML+ GF+  ++ I   +P  R T+
Sbjct: 122 KTHIVVGTPGRVMDHIERETLSLDRIEYLIIDEADEMLNRGFLADVEKILQQLPKDRVTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT   +++++ +  +  P R+ + +   TA TIEH  +  +         + Q +  
Sbjct: 182 VFSATFPQDIERLCQKHMNAPARVAIESTGMTASTIEHRLLPVHRNEK---LAVLQDITV 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + +IFC  K+NV  +   L+K G+S   +HG ++Q  R  +++ FK G  + +VA
Sbjct: 239 VENPDSCMIFCRTKENVDTVYAELDKAGYSAERLHGGLEQEDRFAVMNGFKMGNFRYLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ +V  V N+DVP   E+Y+HR GRTGRAG+ G A TL+ +++ + I AIE
Sbjct: 299 TDVAARGIDVDNVELVINYDVPVEKESYVHRTGRTGRAGKQGTAITLMTRQEERLIGAIE 358

Query: 362 KLIEKKVDWLN--------GDLSSLNPPLEKIDIAQHNH-ARKNNPIPQKSTGFDRRKK 411
             ++ ++  ++         +  +    L    + ++N  AR N  I +      ++KK
Sbjct: 359 SYVQFEIPMIDAPTEAEVAANQDAFEQKLSGRRVVRNNKTARINQDIMKLHFSGGKKKK 417


>gi|172065244|ref|YP_001815956.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171997486|gb|ACB68403.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 477

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 150/370 (40%), Positives = 218/370 (58%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  + D  Y  PTP+Q+K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIAPLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +    V   R    +L PTRELA QV  +F  YGK  +L      GG+    Q  K
Sbjct: 61  QRLVQQGPAVSSNRARVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + +E LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPVQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT TD+++ ++ + L++P  I V+ P+ TA  I+   V    +      +    
Sbjct: 181 QTLLFSATFTDDIRTMAASILRSPVNISVSPPNVTASKIKQWVVTVDKRNKPDLFMHL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +++   + ++F   +  V  L   L++ G++V  IHG+  Q +R++ L  FK G +Q+
Sbjct: 239 -VAENNWDHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEKKV 368
           AIE LI + +
Sbjct: 358 AIEALIGQTL 367


>gi|296198571|ref|XP_002746771.1| PREDICTED: probable ATP-dependent RNA helicase DDX43 [Callithrix
           jacchus]
          Length = 637

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 138/392 (35%), Positives = 213/392 (54%), Gaps = 5/392 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI---LEKG 66
           P+V+  +  +G+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT  +++P           
Sbjct: 240 PEVMENIKKSGFKKPTPIQAQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLDLQPTF 299

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           + +   P  L+L PTRELA QV     KY     L    + GG   + Q ++L +G D++
Sbjct: 300 KGQRNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIEELRKGVDII 358

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + NI  LV+DEADRMLDMGF P I  I   V   RQT++ SAT
Sbjct: 359 IATPGRLNDFQMNNFVNLKNITYLVLDEADRMLDMGFEPQIMKILLDVRPDRQTVMTSAT 418

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
               + ++++++L+ P  + V T    A +     +    +  K   + Q  LQS  T  
Sbjct: 419 WPRSVHRLAQSYLKEPMLVYVGTLDLVAVSSVKQNIIITTEEEKWIHI-QTFLQSLSTTD 477

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+F ++K    +L   L     S+ ++HG+ +QR R K L NFK G +++++A+DLA+
Sbjct: 478 KVIVFVSRKAVADHLSSELILGNMSIESLHGDREQRDREKALENFKTGKVRILIATDLAS 537

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLD+ D+ HV+NFD P   E Y+HRIGRTGRAGR G + T + + D +    +  ++++
Sbjct: 538 RGLDVHDITHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTMTRNDWRFAPELVNILQR 597

Query: 367 KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
               +  DL S+    +     +    +   P
Sbjct: 598 ANQIIPDDLLSMAERFKARQQKREMERKMEKP 629


>gi|41054055|ref|NP_956176.1| probable ATP-dependent RNA helicase DDX23 [Danio rerio]
 gi|38014376|gb|AAH60524.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Danio rerio]
          Length = 807

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 139/434 (32%), Positives = 208/434 (47%), Gaps = 35/434 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ +  L P ++  +   GY  PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 379 NWKEYSLPPHILEVIEKCGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 438

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q
Sbjct: 439 WITTLPKIDRIEDSDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 498

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 499 GFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEYIP 558

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            T Q          E    +    ++  R  V   ++                       
Sbjct: 559 VTNQKPDTDDAEDPEKMMQNFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 618

Query: 215 --ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             +  E            +       + +       IIF NQKK    L  SLEK G++ 
Sbjct: 619 AGKPHERVEQKVILMSEGEKRKKLLEVLASGFEPPIIIFVNQKKGCDVLAKSLEKMGYNA 678

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHR
Sbjct: 679 CTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVLNYDMAKNIEDYIHR 738

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T + KED      +++ I      L   +S+  P L     AQH  
Sbjct: 739 IGRTGRAGKSGVAMTFLTKEDSSVFYDLKQAI------LESPVSTCPPELANHPDAQHKP 792

Query: 393 ARKNNPIPQKSTGF 406
                   ++ T F
Sbjct: 793 GTILTKKRREETIF 806


>gi|324106744|gb|ADX41681.2| vasa [Cynoglossus semilaevis]
          Length = 722

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 130/389 (33%), Positives = 203/389 (52%), Gaps = 13/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 279 MTFEEAALCDSLSKNVSRSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 338

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L  G       + ++ P+ +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 339 HQLMIGGASSSFFSELQEPKAIIVAPTRELINQIFLEARKFAYGTVVRPVVVYGGVSIRH 398

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
           Q   L +G +VL  TPGR++D   RGK+ ++ ++  V+DEADRMLDMGF P ++      
Sbjct: 399 QVSDLNKGCNVLCGTPGRLMDMIERGKVGLSKVQYFVLDEADRMLDMGFEPDMRRLVASP 458

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+QK++ +FL+             A +          ++SK
Sbjct: 459 GMPSREGRQTLMFSATFPEEIQKLAADFLKPDYLFLAVGIVGGACSDVEQTFIEVGKFSK 518

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +       L      +  I+F  +K+    +   L ++     +IHG+ +Q  R + L++
Sbjct: 519 RE--QLLDLVKTCGNERTIVFVEKKRQADFIATFLCQENVPTTSIHGDREQWQREQALAD 576

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+ +AARGLDIPDV HV NFD+P   + Y+HRIGRTGR G  G+A +   
Sbjct: 577 FKYGKCPVLVATSVAARGLDIPDVQHVVNFDLPGSIDEYVHRIGRTGRCGNVGRAVSFFD 636

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
            + D      +  ++ K    +   L  L
Sbjct: 637 TDVDGHLSRPLISILSKAQQEVPPWLEQL 665


>gi|28958131|gb|AAH47455.1| DDX4 protein [Homo sapiens]
          Length = 690

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 129/422 (30%), Positives = 210/422 (49%), Gaps = 18/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 254 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 313

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             +            ++ P  +I+ PTREL  ++     K+     +   ++ GG     
Sbjct: 314 AHMMHDGITASRFKELQEPECIIVAPTRELVNKIYLEARKFSFGTCVRAVVIYGGTQLGH 373

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 374 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 433

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       V    Q+SK
Sbjct: 434 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSK 493

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 494 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 551

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 552 FRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 611

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L      +   LE+I  + +      +         D RK
Sbjct: 612 LESDNH------LAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTRK 665

Query: 411 KN 412
             
Sbjct: 666 GK 667


>gi|332028992|gb|EGI69006.1| ATP-dependent RNA helicase vasa [Acromyrmex echinatior]
          Length = 795

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 134/389 (34%), Positives = 212/389 (54%), Gaps = 13/389 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL   ++  +  +GY KPTP+Q   IP+++   D+   AQTG+GKTA+FV+P+L 
Sbjct: 287 SFDQSGLRTILLENIKKSGYTKPTPVQKYAIPIIMNGQDLMACAQTGSGKTAAFVVPILH 346

Query: 62  ILEKGRARV------RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            L +    +        P  +I+ PTREL +Q+    +K+     +   L  GG     Q
Sbjct: 347 TLLEDPKDLIKTSTSCEPHVIIISPTRELTSQIHQQVKKFSLGSIIRAELAYGGTSVMHQ 406

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NIT 171
           + ++  G  +L+ TPGR+LD   RGK+ ++++  LV+DEADRMLDMGF+P I+    + T
Sbjct: 407 SNRVLNGCHILVATPGRLLDFIGRGKIRLSSLRFLVLDEADRMLDMGFLPDIEKLIDHET 466

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTL+FSAT  +E+Q+++  FL+N   + V         +E  F     Q  K+
Sbjct: 467 MAPAEERQTLMFSATFPNEIQELASRFLRNYLFLAVGIVGGACADVEQNFYQASGQSEKR 526

Query: 232 CALLQ--QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
             L +  +       ++  ++F  QK++   +   L +  F   +IHG+  QR R + L 
Sbjct: 527 KLLKELIEKQHQLGNIEGTLVFVEQKRHTDFIAAFLSESNFPTTSIHGDRLQREREEALY 586

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK G + ++VA+ +AARGLDI +V HV NFD+P   + Y+HRIGRTGR G  GKA +  
Sbjct: 587 DFKRGKMLILVATAVAARGLDIKNVSHVINFDLPKTIDEYVHRIGRTGRVGNRGKATSFF 646

Query: 350 AKE-DIKHIDAIEKLIEKKVDWLNGDLSS 377
               D+   D + K++++    +   L S
Sbjct: 647 DSSTDMPLTDDLVKILKQASQPVPDWLES 675


>gi|121707307|ref|XP_001271794.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
 gi|143359800|sp|A1CHL3|PRP28_ASPCL RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|119399942|gb|EAW10368.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
          Length = 798

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 126/434 (29%), Positives = 203/434 (46%), Gaps = 32/434 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            + + GL  +++  V   GY +PTPIQ   IP+ LQ  D+ G+A TG+GKTASF+LP   
Sbjct: 367 SWEESGLPKRLLELVDRVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLV 426

Query: 59  ----MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
               +  I E    +   P  ++L PTRELA Q+    +K+ +     V  ++GG   E 
Sbjct: 427 YIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTQPLGFNVVSIVGGHSLEE 486

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 487 QAYSLRNGAEIIIATPGRLVDCIERRILVLSQCCYIIMDEADRMIDLGFEEPVNKILDAL 546

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ------- 227
           P T +             +             + +             A           
Sbjct: 547 PVTNEKPDSDEAENSAAMRSHRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGSAGEAV 606

Query: 228 ------------YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
                         K+   L  +L S +     I+F N K+N   +   ++  GFS   +
Sbjct: 607 DTVEQRVELIAGEDKRKKRLADILSSGEFRPPIIVFVNIKRNCDAIAREIKHMGFSSVTL 666

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++    E+Y HRIGR
Sbjct: 667 HGSKTQDQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRIGR 726

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           TGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ    R 
Sbjct: 727 TGRAGKSGVAITFLGNEDADVMYDLKQML------MKSPISRVPEELRKHEAAQSKPTRG 780

Query: 396 NNPIPQKSTGFDRR 409
                 +S+GF  +
Sbjct: 781 YAKKSDESSGFRDK 794


>gi|331217149|ref|XP_003321253.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309300243|gb|EFP76834.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 574

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 121/407 (29%), Positives = 200/407 (49%), Gaps = 30/407 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++ G    ++  + +AG+  P+PIQ +  P+ L   DV  ++ TG+GKT +F +P + 
Sbjct: 112 NFSEAGFPDYIMSEIRNAGFNAPSPIQCQAWPMALSGRDVVAVSATGSGKTIAFSIPAMI 171

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  LIL PTRELA Q+     K+G +  +    + GG+P   Q + L
Sbjct: 172 HINAQPLLAPGDGPIVLILAPTRELAVQIQGECTKFGASSRIRNTCVYGGVPKGQQIRDL 231

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA+++I TPGR++D     K  ++ +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 232 TRGAEIVIATPGRLIDMLESRKTNLHRVTYLVMDEADRMLDMGFEPQIKKIVEQIRPDRQ 291

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT   E+Q+++  +L++  ++ V +   TA       V   + + K+  L++ L 
Sbjct: 292 TLMFSATWPKEVQRLASEYLKDFIQVNVGSLDLTANINITQIVEVCSDFEKRGKLIKHLE 351

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK------------- 286
           +        +IF   K+   +L   L + G+   AIHG+  Q+ R               
Sbjct: 352 KISSESAKVLIFVGTKRVADDLTKYLRQDGWPSLAIHGDKQQQERDWVLEEFKSGRSPIM 411

Query: 287 ---------------ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
                           L      +   ++         D+ D+ +V N+D+PN  E+YIH
Sbjct: 412 IATDVASRGLAVPHIHLDYRARMSWAGLLLDLFFDPLGDVKDIAYVINYDMPNGIEDYIH 471

Query: 332 RIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           RIGRTGRAGR G A++ ++ +  K    + K++      +   L  +
Sbjct: 472 RIGRTGRAGRTGTAYSYISADQSKLARELVKILRDAKQIVPSALVEM 518


>gi|304411084|ref|ZP_07392700.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307301793|ref|ZP_07581551.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304350619|gb|EFM15021.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306913831|gb|EFN44252.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 469

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 138/369 (37%), Positives = 215/369 (58%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P+++  +   GY + TPIQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 12  MAFSTLKLKPELLENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLL 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L+  R R++   TL+L PTRELA QVA       +  +    L +  G+P   Q   L
Sbjct: 72  NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH +R +L ++N+ +LV+DEADRML+MGF P +  I    P  RQ
Sbjct: 129 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +++Q +++  + +P    +       +++       +    K      QLL
Sbjct: 189 TLLFSATFPEQIQSIAKQIMYDPS---MVKVEGNHDSLSIAQHFYHLDDDKARMQALQLL 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ ++FCN K+    +   L+  GFSV A+HG+++QR R + L  F   +  ++
Sbjct: 246 LLEHKPESAVVFCNTKRETQKVADELDGLGFSVLALHGDLEQRDRDETLLQFANKSACVL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  VFN+ V    E +IHRIGRTGRAG  G A+T    +D   I  
Sbjct: 306 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIAL 365

Query: 360 IEKLIEKKV 368
           +E+ +E+++
Sbjct: 366 LEEYLEREI 374


>gi|225435708|ref|XP_002283489.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147854540|emb|CAN78578.1| hypothetical protein VITISV_013679 [Vitis vinifera]
          Length = 612

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 143/391 (36%), Positives = 208/391 (53%), Gaps = 16/391 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA++ L   +   +    YVKPTP+Q   IP+ L   D+   AQTG+GKTA+F  P+++
Sbjct: 154 TFAEIDLGEALNQNIKRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIIS 213

Query: 62  ILEKGRA--------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
            + KG+A        R   P  LIL PTREL+ Q+ D  +K+     + V +  GG P  
Sbjct: 214 GIMKGQASQRPPRGARTVYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPIS 273

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + LERG D+L+ TPGR++D   R ++ +  I  L +DEADRMLDMGF P I+ I   
Sbjct: 274 QQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQ 333

Query: 174 VPFTRQ----TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           +    Q    T+LFSAT   E+QK++ +FL N   + V    S+ + I       +    
Sbjct: 334 MDMPPQGVRQTMLFSATFPKEIQKLASDFLSNYVFLAVGRVGSSTDLIVQRVEFVHDTDK 393

Query: 230 KKCALLQQLLQS----QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
           +   +     Q            ++F   KK   +L H L   GF    IHG+  Q+ R 
Sbjct: 394 RSHLMDLLHAQRANGVHGKQYLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQERE 453

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G A
Sbjct: 454 QALRSFKSGVTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLA 513

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
                  +     A+ +L+++    +   LS
Sbjct: 514 TAFFNDNNSSLAKALSELMQEANQEVPAWLS 544


>gi|225427683|ref|XP_002273691.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 797

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 138/424 (32%), Positives = 214/424 (50%), Gaps = 32/424 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  LS +++ AV  AGY  P+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPMLT
Sbjct: 293 SWVESKLSTELLKAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLT 352

Query: 62  I-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                           P  +++ PTRELA Q+ D   K+     + V  ++GG   E Q 
Sbjct: 353 YISRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQG 412

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY---------- 166
            ++ +G +V+I TPGR++D   R   ++N    +V+DEADRM+DMGF P           
Sbjct: 413 FRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 472

Query: 167 -------IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
                             R T +FSATM   +++++  +L+NP  + + T     +  + 
Sbjct: 473 SNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGT---AGKATDL 529

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                      +     Q L  +   K  I+F N KK+  NL   L+K G+ V  +HG  
Sbjct: 530 ITQHVIMMKESEKMFKLQKLLDELGDKTAIVFINTKKSADNLAKGLDKAGYRVTTLHGGK 589

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q  R   L  F+     ++VA+D+A RG+DIPDV HV N+D+P   E Y HRIGRTGRA
Sbjct: 590 SQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRA 649

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           G+ G A T +   D      +++++ +       + S + P L + + ++       +  
Sbjct: 650 GKTGVATTFLTLHDSDVFYDLKQMLIQ-------NNSPVPPELARHEASKFKPGAIPDRP 702

Query: 400 PQKS 403
           P+++
Sbjct: 703 PRRN 706


>gi|13384106|gb|AAK21271.1| RNA helicase-like protein [Homo sapiens]
          Length = 561

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 147/444 (33%), Positives = 230/444 (51%), Gaps = 20/444 (4%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
            G+ +PTPIQ   IP+ L   D+C  A TGTGKTA+F LP+L  L     +  + R L+L
Sbjct: 1   MGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVL 60

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTREL  QV     +  +  N+T  L +GG+  ++Q   L    D+LI TPGR++DH +
Sbjct: 61  VPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLH 120

Query: 139 RGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
                  ++IE+L++DEADRMLD  F   ++ I  +    RQT+LFSATMTDE++ ++  
Sbjct: 121 NCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASV 180

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
            L+NP RI VN+ +  A  +   F+            +   L ++    + ++F   KK 
Sbjct: 181 SLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQ 240

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
              +   L   G  V  +HGN+ Q  R++ L  FK+  I ++VA+D+AARGLDI  V  V
Sbjct: 241 AHRMHIFLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTV 300

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK----------- 366
            NF +PN  ++Y+HR+GRT RAGR G++ +LV +++ K +  I K  +            
Sbjct: 301 INFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPVKARILPQDV 360

Query: 367 ------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
                 K++ +  D+ ++     +    Q + A+ N        G +   +    ++S  
Sbjct: 361 ILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQE--PERSWF 418

Query: 421 PLKESEKISKLQQDIQENDADSLG 444
             KE  K  K+ + +QE D    G
Sbjct: 419 QTKEERKKEKIAKALQEFDLTLRG 442


>gi|123968740|ref|YP_001009598.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           AS9601]
 gi|123198850|gb|ABM70491.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           AS9601]
          Length = 593

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 116/370 (31%), Positives = 187/370 (50%), Gaps = 5/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D G +  ++ ++++ GY  PTPIQ   IP ++   D+ G AQTGTGKTA+F LP+   
Sbjct: 53  FLDFGFNQSILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPL-IE 111

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                  +     ++                   ++ N     + GG  +  Q   L+R 
Sbjct: 112 KLTDNKELNAKVLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKRK 171

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGRI+DH  +G   + +I  LV+DEAD ML+MGF+  I+ I   +P  +Q +L
Sbjct: 172 VDVVVGTPGRIMDHIRQGTFKIKDINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVL 231

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++ +++ +L +P  I + +     +         +    +   L       +
Sbjct: 232 FSATMPSEIRNIAKKYLNDPAEILIKS----VKKETQLISQKFLYVQRHHKLDALKRILE 287

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  IIF   K    ++  +LE  G +V  ++G+I Q  R   +   K+G I ++VA+
Sbjct: 288 LNNEGVIIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVAT 347

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  +  V N+D P   E Y HRIGRTGRAGR G+A   V + +   +  +E 
Sbjct: 348 DVAARGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLEN 407

Query: 363 LIEKKVDWLN 372
               K++ +N
Sbjct: 408 STRTKIEEIN 417


>gi|195437123|ref|XP_002066494.1| GK18312 [Drosophila willistoni]
 gi|194162579|gb|EDW77480.1| GK18312 [Drosophila willistoni]
          Length = 1424

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 117/382 (30%), Positives = 202/382 (52%), Gaps = 9/382 (2%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
             F +  L   ++  +  + Y  PTPIQ  +IP++    D+   AQTG+GKTA+F+LP+L 
Sbjct: 1014 TFEEAKLRDILMDNIKKSAYTVPTPIQKVSIPVISAGRDLMACAQTGSGKTAAFLLPILN 1073

Query: 62   ILEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +        +  P+ +I+ PTRELA Q+ +   K+  N  L + ++ GG   + QN+ +
Sbjct: 1074 HILDKGYELEIGKPQAIIMSPTRELAVQIFNEARKFAHNSYLKITIVYGGTSVKYQNESI 1133

Query: 120  ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             +G  +LI TPGR+LD   R  +   +   +V+DEADRMLDMGF   ++ I +     ++
Sbjct: 1134 TKGCHILIATPGRLLDFVERTFITFEDTRFVVLDEADRMLDMGFSESMRKIITHPTMRKE 1193

Query: 180  TL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
                +FSAT  +E+Q+++  FL++   + +         +      T  +  K     + 
Sbjct: 1194 HQTLMFSATFPEEIQRMAGEFLRDYVFVTIGVIGGACSDVTQ----TIYEVDKFNKRAKL 1249

Query: 238  LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +D     I+F   K+    L     +  F   +IHG+  Q  R + L  FK G ++
Sbjct: 1250 MEILRDGADGTIVFVETKRGADFLASFFSETEFPTTSIHGDRLQSQREQALREFKSGKMK 1309

Query: 298  LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKH 356
            +++A+ +A+RGLDI +V HV N+D+P+  ++Y+HRIGRTGR G +G+A +   + +D   
Sbjct: 1310 VLIATSVASRGLDIKNVSHVINYDMPSTIDDYVHRIGRTGRVGNNGRATSFFDSDKDRAL 1369

Query: 357  IDAIEKLIEKKVDWLNGDLSSL 378
               + K++E     +   L S+
Sbjct: 1370 AGDLVKILEGSGQEVPDFLKSI 1391


>gi|167525138|ref|XP_001746904.1| p68DDX5 RNA helicase [Monosiga brevicollis MX1]
 gi|163774684|gb|EDQ88311.1| p68DDX5 RNA helicase [Monosiga brevicollis MX1]
          Length = 487

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 130/381 (34%), Positives = 207/381 (54%), Gaps = 4/381 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F        V+  ++  G+  PTPIQ +  P+ L   ++ G+A TG+GKT SF+LP + 
Sbjct: 62  TFERASFPAYVMDVLMREGFSTPTPIQAQGWPMALAGRNMVGVADTGSGKTLSFILPAIV 121

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA Q+A+   KYG +  +    + GG P   Q   L
Sbjct: 122 HINNQPLLRPGDGPIALVLAPTRELAQQIAEVAHKYGSSSRIKTTCVFGGAPKRGQAMDL 181

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG ++LI TPGR++D  +  K  +     LV+DEADRMLDMGF P ++ I S +   RQ
Sbjct: 182 ERGVELLIGTPGRLIDFLDTRKTNLRRCTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQ 241

Query: 180 TLLFSATMTDELQKVSENF-LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQ 237
           TL++SAT   E+Q+++  F  Q+  R+++     +A       V     Y K+       
Sbjct: 242 TLMWSATWPKEVQQLAYEFLGQDVIRVQIGAIGLSANHRIKQHVMIMQDYDKQRELFRLL 301

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               +      IIF   K+NV +L  +L ++GF    +HG+  QR R  +L+ F++G   
Sbjct: 302 DEIMRQKENKTIIFAETKRNVDDLTRNLRREGFPAMCMHGDKQQRERDTVLAEFRDGRHP 361

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ D+ +V NFD PN +E+Y+HRIGRT R G  G A+T  + ++ +  
Sbjct: 362 ILIATDVASRGLDVKDIKYVINFDYPNNSEDYVHRIGRTARGGGEGTAYTFFSSKNARQA 421

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             +  ++E+    +  +L  +
Sbjct: 422 KDLVSVLEEAKQEIPRELRDM 442


>gi|68444623|ref|XP_684923.1| PREDICTED: probable ATP-dependent RNA helicase DDX6 isoform 1
           [Danio rerio]
          Length = 484

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 109/377 (28%), Positives = 191/377 (50%), Gaps = 8/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 98  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 157

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++    +    + +++ PTRELA QV+    +  K+   + V    GG        +L+
Sbjct: 158 RIDL---KKDSIQAVVIVPTRELALQVSQICIQVSKHMGGVKVMATTGGTNLRDDIMRLD 214

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +  ++++V+DEAD++L   F+  ++ I S +   RQ 
Sbjct: 215 ETVHVVIATPGRILDLIKKGVAKVGQVQMIVLDEADKLLSQDFVQMMEEILSSLSKQRQI 274

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK    F+ +  +           T++           ++       L 
Sbjct: 275 LLYSATFPLSVQK----FMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLF 330

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 331 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 390

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P   E Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 391 CTDLFTRGIDIQAVNVVINFDFPKLGETYLHRIGRSGRFGHLGLAINLITYDDRFNLKGI 450

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +   +  
Sbjct: 451 EEQLGTEIKPIPSSIDK 467


>gi|126315120|ref|XP_001365663.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 700

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 125/389 (32%), Positives = 201/389 (51%), Gaps = 13/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 260 LTFEEADLCQTLNNNITKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 319

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             + +           + P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 320 AHMMRDGITASRFKDQQEPECIIVAPTRELINQIFLEARKFSFGTCIRPVVIYGGTQLGH 379

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I  LV+DEADRMLDMGF P ++      
Sbjct: 380 SIRQIMQGCNILCATPGRLMDIIGKEKIGLRQIRYLVLDEADRMLDMGFGPEMKKLISFP 439

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL+             A +     V    QYSK
Sbjct: 440 GMPSKDQRQTLMFSATFPEEIQRLAGEFLKTDYLFVAVGQVGGACSDVQQTVLQVGQYSK 499

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 500 REKLVE--ILRNIGEERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 557

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  GKA +   
Sbjct: 558 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNIGKAISFFD 617

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
            E D      + K++      +   L  +
Sbjct: 618 PEPDSHLAQPLVKVLSDAQQDVPAWLEEI 646


>gi|325106943|ref|YP_004268011.1| DEAD/DEAH box helicase [Planctomyces brasiliensis DSM 5305]
 gi|324967211|gb|ADY57989.1| DEAD/DEAH box helicase domain protein [Planctomyces brasiliensis
           DSM 5305]
          Length = 399

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 140/386 (36%), Positives = 231/386 (59%), Gaps = 8/386 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGLSP+ V  +   GY  P+PIQ   IP  L+  D  G +QTGTGKTA+F++P+L
Sbjct: 17  VTFADLGLSPETVEHLKSVGYEHPSPIQRDFIPPALKGVDCLGQSQTGTGKTAAFMMPVL 76

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L++ +     P+ L+L PTREL+ QVA   +K  +   L +A+++GG P +AQ +K+E
Sbjct: 77  ELLKEQQEE---PQALVLCPTRELSEQVAVEAQKISRFSKLEIAVVVGGRPLKAQMQKIE 133

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR++D F R  L + NI + V+DEADRMLD+GF P ++ I    P  RQT
Sbjct: 134 RGVDVVVGTPGRVIDLFKRKSLSLKNIRLAVLDEADRMLDIGFRPDMEFILKQCPKERQT 193

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL SAT+  E+++++  F+++P RI++   + TA+ +E  +         +  +      
Sbjct: 194 LLLSATLPSEVERLANRFMKDPVRIDIEPQNVTADRVEQFYCTVDEHRKLQLLIKLL--- 250

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+  K  I+FC  K+    L +  + +   V  +HG++ Q  R +++  F+ G +++++
Sbjct: 251 VQEKPKQAIVFCRTKRKADQLYNKFQTRLDGVETLHGDLPQSKRDRVMKQFRAGKVRMLI 310

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR--AGRHGKAFTLVAKEDIKHID 358
           A+D+  RG+D+  + H+ N+D+P  +++Y+HRIGR GR  +   G+AFT V +     + 
Sbjct: 311 ATDIVGRGIDVGGISHIINYDIPEHSDDYVHRIGRAGRLSSEFSGRAFTFVTQGQGNELT 370

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384
            IE L+ K +     D    + P E+
Sbjct: 371 KIELLVNKLIPEYKLDGLETHTPRER 396


>gi|302506493|ref|XP_003015203.1| hypothetical protein ARB_06326 [Arthroderma benhamiae CBS 112371]
 gi|291178775|gb|EFE34563.1| hypothetical protein ARB_06326 [Arthroderma benhamiae CBS 112371]
          Length = 816

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 124/455 (27%), Positives = 199/455 (43%), Gaps = 26/455 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F DL LS      +  + + + T IQ + IP  LQ  D+ G A+TG+GKT +F++P + 
Sbjct: 51  SFTDLPLSEPTRLGLSASHFKELTDIQSRAIPHALQGRDILGAAKTGSGKTLAFLVPVLE 110

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  K          LI+ PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L 
Sbjct: 111 NLYRKQWTEYDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLQEEQERLG 170

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +           +NI++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 171 RMNILVCTPGRMLQHMDQTAAFDTDNIQMLVLDEADRIMDMGFQSTVDAIVEHLPKERQT 230

Query: 181 LLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT T ++      +           T SS   +             K   L   + 
Sbjct: 231 MLFSATQTKKVSDLARLSLQDPEYISVHQTASSATPSTLQQHYVVTPLPDKLDTLWSFIR 290

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S  +        +++   V       + G  +  +HG   Q +R+ I   F       +
Sbjct: 291 SSLKSKIIVFFSSSKEVRFVYEAFRQMQPGIPLLHLHGRQKQGARLDITHKFSASKNSCL 350

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKHID 358
            A+D+ ARGLD P V  V   D P  ++ YIHR+GRT R  R G+A   +   E+I  + 
Sbjct: 351 FATDVVARGLDFPAVDWVIQLDCPEDSDTYIHRVGRTARYERDGRAVLFLDPSEEIGMLS 410

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +E   +KK+            P+EKI+I  +      + +  ++  F   +  Y  QK+
Sbjct: 411 RLE---QKKI------------PIEKINIRANKQQSIKHQL--QNMCFKDPQLKYLGQKA 453

Query: 419 HIPLKESEKISKLQQDIQ------ENDADSLGFRG 447
                +S  I K ++         E  A SLG  G
Sbjct: 454 FTSYVKSIHIQKDKEVFDVKALPLEEYAASLGLPG 488


>gi|258563228|ref|XP_002582359.1| hypothetical protein UREG_07132 [Uncinocarpus reesii 1704]
 gi|237907866|gb|EEP82267.1| hypothetical protein UREG_07132 [Uncinocarpus reesii 1704]
          Length = 836

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 144/454 (31%), Positives = 224/454 (49%), Gaps = 24/454 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  LS  ++  +   G+  PTPIQ K IP+ L   D+ G A TG+GKTA+F++P+L 
Sbjct: 313 TFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPVGLLGKDLVGGAVTGSGKTAAFIIPILE 372

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R +IL PTRELA Q  +   K     ++T   L+GG     Q   L++
Sbjct: 373 RLLYRPRKVPTSRVVILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKQ 432

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 433 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 492

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTD + K+    L  P R+ V+    T  T+   FV        K      LL 
Sbjct: 493 MLFSATMTDSVDKLIRVGLNRPVRLMVDAKKQTVGTLVQEFVRLRPGREGKRMGYLVLLC 552

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F  QKK            G     +HG++ Q  R+  +  F++G +  ++
Sbjct: 553 QTVYTNRVIVFFRQKKEAHRARIVFGLLGLKAAELHGSMSQEQRIHAVEAFRDGKVPFLL 612

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA- 359
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + A 
Sbjct: 613 ATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKIVKAA 672

Query: 360 -----------IEKLIE--------KKVDWLNGDLSSLNPPLEK---IDIAQHNHARKNN 397
                      + ++++         KV+ +  ++  +    +    +  A+    R +N
Sbjct: 673 VKAGRAQGAKIVSRIVDPNVADEWAIKVEEMQSEIEDILKEEKAEKHLAQAEMQVTRGHN 732

Query: 398 PIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKL 431
            I  +     R K+ +   +      ++  +S+L
Sbjct: 733 LIKHEDEIMSRPKRTWFETEREKKEAKNRALSEL 766


>gi|194897089|ref|XP_001978588.1| GG17597 [Drosophila erecta]
 gi|190650237|gb|EDV47515.1| GG17597 [Drosophila erecta]
          Length = 955

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 132/439 (30%), Positives = 217/439 (49%), Gaps = 25/439 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   V+  +   G+ KPT IQ +  P+ L   D+ GIAQTG+GKT +++LP +
Sbjct: 241 VSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAI 300

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQN 116
                +    R   P  L+L PTRELA Q+      YG           + GG     Q 
Sbjct: 301 VHIGNQPPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQA 360

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+RG +V+I TPGR++D        +     LV+DEADRMLDMGF P I+ I   +  
Sbjct: 361 RDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 420

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK----- 231
            RQ +++SAT   E+Q ++ +FL +  +I + + + +A       V    +  K      
Sbjct: 421 DRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEMEKPQRLVR 480

Query: 232 -CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
               +     S +     IIF   K  V ++   +  +G++  +IHG+  Q  R  +L +
Sbjct: 481 LLNEIAPTKNSANNGNKIIIFVETKIKVEDILQIIRTEGYTATSIHGDKTQNERDSVLKD 540

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   +++A+D+A+RGLD+ D+ +V N+D PN +ENY+HRIGRTGR  + G A+T   
Sbjct: 541 FRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFT 600

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ---HNHARKNNPIPQKSTGFD 407
            ++ K    +  ++E+             P    +D+A+    +   + N     + G D
Sbjct: 601 PDNAKQARELISVLEEAGQ---------TPSQALLDLARSMPSSGGYRGNKRWNNNGGGD 651

Query: 408 RRKKNYSS---QKSHIPLK 423
           R    ++    Q+++ PL 
Sbjct: 652 RNTGGHNGVYQQRNNNPLN 670


>gi|217972083|ref|YP_002356834.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS223]
 gi|217497218|gb|ACK45411.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
 gi|315266255|gb|ADT93108.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 469

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 139/369 (37%), Positives = 215/369 (58%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P+++  +   GY + TPIQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 12  MAFSTLKLKPELLENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLL 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L+  R R++   TL+L PTRELA QVA       +  +    L +  G+P   Q   L
Sbjct: 72  NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH +R +L ++N+ +LV+DEADRML+MGF P +  I    P  RQ
Sbjct: 129 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +++Q +++  + +P    +       +++       +    K      QLL
Sbjct: 189 TLLFSATFPEQIQSIAKQIMYDPS---MVKVEGNHDSLSIAQHFYHLDDDKARMQALQLL 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ ++FCN K+    +   LE  GFSV A+HG+++QR R + L  F   +  ++
Sbjct: 246 LLEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  VFN+ V    E +IHRIGRTGRAG  G A+T    +D   I  
Sbjct: 306 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIAL 365

Query: 360 IEKLIEKKV 368
           +E+ +E+++
Sbjct: 366 LEEYLEREI 374


>gi|146294198|ref|YP_001184622.1| ATP-dependent RNA helicase DbpA [Shewanella putrefaciens CN-32]
 gi|145565888|gb|ABP76823.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 458

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 139/369 (37%), Positives = 215/369 (58%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P+++  +   GY + TPIQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 1   MAFSTLKLKPELLENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L+  R R++   TL+L PTRELA QVA       +  +    L +  G+P   Q   L
Sbjct: 61  NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH +R +L ++N+ +LV+DEADRML+MGF P +  I    P  RQ
Sbjct: 118 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +++Q +++  + +P    +       +++       +    K      QLL
Sbjct: 178 TLLFSATFPEQIQSIAKQIMYDPS---MVKVEGNHDSLSIAQHFYHLDDDKARMQALQLL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ ++FCN K+    +   LE  GFSV A+HG+++QR R + L  F   +  ++
Sbjct: 235 LLEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  VFN+ V    E +IHRIGRTGRAG  G A+T    +D   I  
Sbjct: 295 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIAL 354

Query: 360 IEKLIEKKV 368
           +E+ +E+++
Sbjct: 355 LEEYLEREI 363


>gi|126175665|ref|YP_001051814.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS155]
 gi|152999404|ref|YP_001365085.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS185]
 gi|160874024|ref|YP_001553340.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS195]
 gi|125998870|gb|ABN62945.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
 gi|151364022|gb|ABS07022.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|160859546|gb|ABX48080.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
          Length = 458

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 139/369 (37%), Positives = 215/369 (58%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P+++  +   GY + TPIQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 1   MAFSTLKLKPELLENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L+  R R++   TL+L PTRELA QVA       +  +    L +  G+P   Q   L
Sbjct: 61  NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH +R +L ++N+ +LV+DEADRML+MGF P +  I    P  RQ
Sbjct: 118 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +++Q +++  + +P    +       +++       +    K      QLL
Sbjct: 178 TLLFSATFPEQIQSIAKQIMYDPS---MVKVEGNHDSLSIAQHFYHLDDDKARMQALQLL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ ++FCN K+    +   LE  GFSV A+HG+++QR R + L  F   +  ++
Sbjct: 235 LLEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  VFN+ V    E +IHRIGRTGRAG  G A+T    +D   I  
Sbjct: 295 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIAL 354

Query: 360 IEKLIEKKV 368
           +E+ +E+++
Sbjct: 355 LEEYLEREI 363


>gi|297845068|ref|XP_002890415.1| hypothetical protein ARALYDRAFT_472328 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297336257|gb|EFH66674.1| hypothetical protein ARALYDRAFT_472328 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 827

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 125/381 (32%), Positives = 197/381 (51%), Gaps = 7/381 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--L 60
           +   GL+ K++  +    Y KP PIQ + +P+++   D  G+A+TG+GKT  FVLPM   
Sbjct: 193 WHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRH 252

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +        P  L++ PTREL  Q+  +  K+ K   +    + GG     Q  +L+
Sbjct: 253 IKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELK 312

Query: 121 RGADVLICTPGRILDHFNR---GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RG ++++CTPGR++D           +  +  LV+DEADRM DMGF P I  I   +   
Sbjct: 313 RGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPE 372

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT   +++ ++   L  P  I+V   S   + I           S +   L +
Sbjct: 373 RQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLV--EVRPESDRFFRLLE 430

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL         ++F   ++    L   + K  +   ++HG  DQ  R   +S+FK     
Sbjct: 431 LLGEWYEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKSNVCN 490

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L++A+ +AARGLD+ ++  V NFD PN  E+Y+HR+GRTGRAGR G A T ++++D K+ 
Sbjct: 491 LLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYA 550

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K +E     +  DL +L
Sbjct: 551 PDLVKALELSEQPVPDDLKAL 571


>gi|262170498|ref|ZP_06038176.1| ATP-dependent RNA helicase DbpA [Vibrio mimicus MB-451]
 gi|261891574|gb|EEY37560.1| ATP-dependent RNA helicase DbpA [Vibrio mimicus MB-451]
          Length = 460

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 139/402 (34%), Positives = 225/402 (55%), Gaps = 9/402 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L L P+++  +   G+   TPIQ +++P +L   DV G  +TG+GKTA+F L +L+
Sbjct: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+    L+L PTRELA QVA +    G+  +    L +  G+P   Q   LE
Sbjct: 65  NLNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRTIHNIKVLTLCGGMPMGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH ++ ++ ++ +  LV+DEADRML+MGF   ++ I +  P  RQT
Sbjct: 122 HGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++++++  +N   I+V     T +T            S       + L 
Sbjct: 182 LLFSATYPASIEQIAQSVTRNAMMIKVAA---THDTSSIRQYFYKVDGSAARDEALETLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + ++FCN K+ V N+  +L + GFSV  +HG+++QR R + L  F   +I ++V
Sbjct: 239 LHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFN+D+    E ++HRIGRTGRAG  G AF+  +  +   +  I
Sbjct: 299 ATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQI 358

Query: 361 EKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           ++ ++  ++   L   ++   P    +   Q +  +K+   P
Sbjct: 359 DEYMDIAIEPSTLPQPVAGARPYAANMVTIQIDGGKKDKVRP 400


>gi|258625772|ref|ZP_05720651.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
 gi|258582010|gb|EEW06880.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
          Length = 460

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 139/402 (34%), Positives = 225/402 (55%), Gaps = 9/402 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L L P+++  +   G+   TPIQ +++P +L   DV G  +TG+GKTA+F L +L+
Sbjct: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+    L+L PTRELA QVA +    G+  +    L +  G+P   Q   LE
Sbjct: 65  NLNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRTIHNIKVLTLCGGMPMGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH ++ ++ ++ +  LV+DEADRML+MGF   ++ I +  P  RQT
Sbjct: 122 HGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++++++  +N   I+V     T +T            S       + L 
Sbjct: 182 LLFSATYPASIEQIAQSVTRNAMMIKVAA---THDTSSIRQYFYKVDGSAARDEALETLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + ++FCN K+ V N+  +L + GFSV  +HG+++QR R + L  F   +I ++V
Sbjct: 239 LHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFN+D+    E ++HRIGRTGRAG  G AF+  +  +   +  I
Sbjct: 299 ATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQI 358

Query: 361 EKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           ++ ++  ++   L   ++   P    +   Q +  +K+   P
Sbjct: 359 DEYMDIAIEPSTLPQPVAGARPYAANMVTIQIDGGKKDKVRP 400


>gi|86134570|ref|ZP_01053152.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
 gi|85821433|gb|EAQ42580.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
          Length = 450

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 148/450 (32%), Positives = 229/450 (50%), Gaps = 4/450 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS ++  A+ D G+  PTPIQ +   +V    DV GIAQTGTGKT ++++P+L
Sbjct: 1   MTFKELDLSNQLQYAIEDLGFENPTPIQEQAFSVVRSGKDVVGIAQTGTGKTFAYMMPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  + +   PR L+L PTREL  QV D  EK  K  N  V  + GG     Q + + 
Sbjct: 61  RDLKFSKQK--HPRVLVLVPTRELVVQVVDEIEKLSKYINTRVLGVYGGTNINTQKQAIL 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TPGR+ D      L + +I+ LVIDE D MLD+GF   + NI  ++P  RQ 
Sbjct: 119 QGQDIIVATPGRLYDLGLSNALKLKSIQKLVIDEVDVMLDLGFRFQLMNIFDILPERRQN 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+++ ++  +F +NP++I +    +    IE         ++K   L   L  
Sbjct: 179 VLFSATMTEDVDELIYDFFKNPEKISIAVSGTPLNNIEQISYNVPNFFTKVNLLNHLLSD 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   K  I    ++       H  E  G   C IH N  Q  R++ +  F EG  +++V
Sbjct: 239 KETYNKVLIFVGFKRTADYLFKHLEEVFGSETCVIHSNKTQNYRIRSIRQFDEGNNRILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD  +V HV NFD P+  ENY+HRIGRTGRA + GK   L   ++ +  + I
Sbjct: 299 ATDVMARGLDFDNVSHVINFDTPDFPENYMHRIGRTGRAEKAGKTILLSTAKEQEAKEEI 358

Query: 361 EKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           E L++ K+    L  ++       E     +     KN    +   G    +K+  + K 
Sbjct: 359 EALMDYKIPLLELPEEIEISTQLTEDERPKEDREQSKNRTGLEYVPGPAFHEKSEKNSKV 418

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGN 448
           ++      +I+K  +  +     +   R  
Sbjct: 419 NLGGSYRREIAKKYKKPKTRGDKNYNRRNK 448


>gi|193683780|ref|XP_001952119.1| PREDICTED: ATP-dependent RNA helicase abstrakt-like [Acyrthosiphon
           pisum]
          Length = 615

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 127/395 (32%), Positives = 199/395 (50%), Gaps = 16/395 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L+  ++  +   G  KPTPIQI+ IP VL   D+ GIA TG+GKT  FVLP+L 
Sbjct: 175 SFKEMKLNKGIMAGLSQKGIKKPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFVLPLLM 234

Query: 62  ILEKGRARVRM-----PRTLILEPTR------ELAAQVADNFEKYGKNYNLTVALLIGGI 110
              +   ++       P  LI+ P+R               F +      L   L IGGI
Sbjct: 235 FCLEQEIKLPFKPNEGPYGLIICPSRELAKQTFDIINHYMTFLERSNYPRLRSCLAIGGI 294

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
           P       ++RG  +++ TPGR++D  ++  + +     L +DEADRM+DMGF   ++ I
Sbjct: 295 PVFESLDVIKRGVHIMVATPGRLMDMLDKKMINLEVCRYLCMDEADRMIDMGFEEDVRTI 354

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     +      A       +       +
Sbjct: 355 FSFFQGQRQTLLFSATMPKKIQN----FARSALVKPITINVGRAGAASMNVIQEVEYVKQ 410

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   + T    +IF  +K++V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 411 EAKVVYLLECLKKTTPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERSKSVDA 470

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F++G   ++VA+D+A++GLD  ++ HV N+D+P+  ENY+HRIGRTGR+G+ G A T + 
Sbjct: 471 FRKGQKDVLVATDVASKGLDFEEIQHVINYDMPDDVENYVHRIGRTGRSGKTGIATTFIN 530

Query: 351 K-EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
           K  D   +  ++ L+ +    +   LS L    EK
Sbjct: 531 KANDESVLLDLKHLLIEARQNVPLFLSELESENEK 565


>gi|71800669|gb|AAZ41384.1| Ded1-like DEAD-box RNA helicase [Chironomus tentans]
          Length = 776

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 133/398 (33%), Positives = 205/398 (51%), Gaps = 21/398 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L+  +   +  A Y KPTP+Q   IP++L   D+   AQTG+GKTA+F++P+L 
Sbjct: 268 SFDDIKLTEIIRTNIKMARYDKPTPVQKYAIPIILSGRDLMSCAQTGSGKTAAFLVPILN 327

Query: 62  IL------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            +               + R + P  L+L PTRELA Q+ +  +K+     +  A+L GG
Sbjct: 328 RMLEQGASMNPASNRPYQRRKQYPLGLVLAPTRELATQIYEEAKKFSYRSRMRPAVLYGG 387

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q ++L+RG  +++ TPGR+ D  NRGK+ + N+  LV+DEADRMLDMGF P I++
Sbjct: 388 NNTSEQMRELDRGCHLIVATPGRLDDIINRGKIGLENLRFLVLDEADRMLDMGFEPQIRH 447

Query: 170 ITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I               +FSAT    +Q+++ +FL N   + V    ST+E I    +   
Sbjct: 448 IIENRDMPPTGQRQTLMFSATFPKNIQELASDFLSNYIFLAVGRVGSTSENITQTILWVN 507

Query: 226 AQYSKKC-----ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
               +       + L++           +IF   KK    L   L +    V +IHG+  
Sbjct: 508 ENEKRSYLLDLLSRLREGSPDYSPDSLTLIFVETKKGADALEEFLYQNKHPVTSIHGDRS 567

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           QR R   L  F+ G   ++VA+ +AARGLDIP V HV N+D+P+  E Y+HRIGRTGR G
Sbjct: 568 QREREDALKCFRSGDCPILVATAVAARGLDIPHVKHVINYDLPSDVEEYVHRIGRTGRMG 627

Query: 341 RHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
             G A +   +++   +  + +L+ +    L   L  +
Sbjct: 628 NLGIATSFFNEKNRNIVSDLVELLIETNQELPSFLEEM 665


>gi|253681398|ref|ZP_04862195.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873]
 gi|253561110|gb|EES90562.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873]
          Length = 370

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 127/358 (35%), Positives = 202/358 (56%), Gaps = 6/358 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +LG+S   +  +   G   PTPIQ K++ L+   +DV   AQTGTGKT +F+LPM 
Sbjct: 1   MNFKELGISEDTIKVLKSQGITVPTPIQEKSMDLIKNGNDVIAEAQTGTGKTFAFLLPMF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +++    LI+ PTRELA Q+ +   K  K  +L +    GG    +Q KKL+
Sbjct: 61  ENMSPNINKIQG---LIVTPTRELAIQITEEANKLKKAKDLNILAAYGGKDISSQLKKLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH  R  + +  ++ +V+DEAD+ML MGF   ++ I   +    Q 
Sbjct: 118 GNIHLIIATPGRLLDHIKRNTINIEKLKTIVLDEADQMLYMGFKNEVEEIMKHISKKTQI 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  +++K++  +++ P  + +     T + I+   V T  +  +          
Sbjct: 178 LCFSATMNSQVKKLAYRYMKEPNVVSIQNEEVTLKNIKQAVVETTDRRKQDALCKVLDED 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       IIFC  K+ V NL  +L ++G++   IHG++ Q  R +++  FK   IQ ++
Sbjct: 238 NAFM---AIIFCRTKRRVDNLEAALHQRGYNCKKIHGDLTQSKRERVMKEFKNMDIQYLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           A+D+AARGLDI  V HV+++D+P   E+YIHRIGRTGRAG  G+    +  +D + +D
Sbjct: 295 ATDVAARGLDISGVTHVYSYDIPENTESYIHRIGRTGRAGEKGETCLFIDPKDKRTLD 352


>gi|254577069|ref|XP_002494521.1| ZYRO0A03476p [Zygosaccharomyces rouxii]
 gi|238937410|emb|CAR25588.1| ZYRO0A03476p [Zygosaccharomyces rouxii]
          Length = 399

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 108/379 (28%), Positives = 178/379 (46%), Gaps = 4/379 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   G+  P+ IQ + I  ++   DV   AQ+GTGKTA+F + ML 
Sbjct: 24  TFEAMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGMLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLE 120
           +LE  R  ++    L+L PTRELA+Q        G   N+   AL  G    +   +   
Sbjct: 84  VLELKRKDLQA---LVLSPTRELASQSCQVVSNLGDYLNVKAFALTGGKALKDDLKRIQS 140

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  V+  TPGR+LD   R  +   N+++LV+DEAD +L        Q            
Sbjct: 141 SGCHVVSGTPGRVLDLIKRQVVQTRNVQVLVLDEADELLSETLGFKQQIYDIFARLPPGC 200

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +   + T     +          +++                      +        L 
Sbjct: 201 QVVVVSATMSRDILEVTKKFMSDPVKILVKRDEISLEGISQYYVDVSKEEWKFDTLCDLY 260

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IFCN +K V  L   L +  F+V ++HG++ Q  R K++++F+ G  ++++
Sbjct: 261 DSLTITQCVIFCNTRKKVDWLSKKLIQSNFAVVSMHGDMKQEDRDKVMNDFRTGHSRVLI 320

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D+ ARG+D+  +  V N+D+P   ENYIHRIGR+GR GR G A   + +ED   + A 
Sbjct: 321 STDVWARGIDVQQISLVINYDMPEIMENYIHRIGRSGRFGRKGVAVNFITREDSSKLKAT 380

Query: 361 EKLIEKKVDWLNGDLSSLN 379
           EK+   K+  +  +LS L+
Sbjct: 381 EKMYGIKIKPMPANLSELS 399


>gi|256052028|ref|XP_002569581.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|227284279|emb|CAY16829.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 840

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 134/413 (32%), Positives = 209/413 (50%), Gaps = 5/413 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL   ++ A+  AGY +PTPIQ + +PL+L   DV GI +TG+GKTA+F+ P++ 
Sbjct: 298 SFAHLGLDEPLMEAIRKAGYTQPTPIQAQAVPLILAGRDVIGIGKTGSGKTAAFLWPLII 357

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  +I  PTRELA Q+    +K  K YNLTV    GG     Q K  
Sbjct: 358 HIMDQPELKLGDGPIGVICAPTRELALQIYSEAKKLAKVYNLTVVCAYGGGSLWEQQKAC 417

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G ++L+CTPGR++D   +    +  +  LV DEAD+M ++GF P +++I + V   RQ
Sbjct: 418 EAGCEILVCTPGRLIDIVKKKSTNLRRVTYLVFDEADKMFNLGFEPQVRSIANHVRPDRQ 477

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    L++++ + L +P RI         E I            K   L + L+
Sbjct: 478 TLLFSATFKRRLERLARDILLDPVRIIQGELGEANEDITQHVEIFDKIEQKWDWLTRNLV 537

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        I    +  +   +   L+ +   V  IHG++ Q  R  ++  FK     ++
Sbjct: 538 RLTTEGSVLIFVTRKVHS-EEVAQKLKSRDLKVLLIHGDMHQSDRNTVIQAFKRQEAPIL 596

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHI 357
           VA+D+A+RGLDIP + +V N++V    + + HRIGRTGRAG  G A+TL    K+ +   
Sbjct: 597 VATDVASRGLDIPSIHNVINYEVARDIDTHTHRIGRTGRAGAKGTAYTLFVAGKDPVDFA 656

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
             + + +E     +   L  +          + +   +N    + S GF+ R+
Sbjct: 657 ACLVQHLESGSQKVPQRLLDIALKCNWFANNRSSLNGRNEGCIRPSGGFEPRQ 709


>gi|169633001|ref|YP_001706737.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii SDF]
 gi|169151793|emb|CAP00614.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter baumannii]
          Length = 383

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 201/377 (53%), Gaps = 6/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++  A+   G+ + TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 5   FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 63  LEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L     + +     PR LIL PTRELA Q+  + +   K  NL +  L+GG+ F+ Q K+
Sbjct: 65  LLNNPVQEQRFRGEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQ 124

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P  
Sbjct: 125 LDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRK 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q      + T     V     Q              +T        Y    +    L Q
Sbjct: 185 EQRQTLMFSAT-FSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQ 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  ++ +   +IF N++  V  L   L+K G+ V  + G I Q  R+K+L  FK+G   
Sbjct: 244 DILREEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHN 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +M+A+D+A RG+ +  V HV NF +P ++++Y+HRIGRTGRAG  G + + ++++D  ++
Sbjct: 304 IMIATDVAGRGIHVEGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDAFYL 363

Query: 358 DAIEKLIEKKVDWLNGD 374
             IEK I KK+     D
Sbjct: 364 PEIEKAIGKKLPLTRLD 380


>gi|148826462|ref|YP_001291215.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae PittEE]
 gi|189040030|sp|A5UDI1|RHLB_HAEIE RecName: Full=ATP-dependent RNA helicase rhlB
 gi|148716622|gb|ABQ98832.1| ATP-dependent RNA helicase [Haemophilus influenzae PittEE]
          Length = 415

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 125/379 (32%), Positives = 194/379 (51%), Gaps = 4/379 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L P V   +   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 11  FSDLSLHPIVRDTLAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        PR LIL  TRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 71  LLTHQDPNLEYPHPRALILASTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAI 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P  + 
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPTPQV 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L    + T   +     F       E        +T        +   ++    L   L
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMND-PEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTL 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G + ++
Sbjct: 250 MEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDIL 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++ A
Sbjct: 310 VATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPA 369

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+ I   +     +  +L
Sbjct: 370 IEEYIGHSIPVSQYETEAL 388


>gi|227529699|ref|ZP_03959748.1| ATP-dependent RNA helicase [Lactobacillus vaginalis ATCC 49540]
 gi|227350365|gb|EEJ40656.1| ATP-dependent RNA helicase [Lactobacillus vaginalis ATCC 49540]
          Length = 469

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 124/439 (28%), Positives = 214/439 (48%), Gaps = 12/439 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  L P ++ A+ +  + +PTP+Q K IPL+L+   V G + TG+GKT +F+LP+  
Sbjct: 17  TFADFNLQPYLLDAIKEINFHQPTPVQEKVIPLILKGDSVVGQSATGSGKTHAFLLPIFA 76

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNKK 118
            L+  +  V+     I  P+RELA Q+    ++  K+    V +              + 
Sbjct: 77  QLDPAKQEVQAV---ITTPSRELAYQIYAAAKQLNKHLPTPVTIHNYVGGTDKQHQIEQL 133

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +   ++I TPGR+LD      L ++     V+DEAD  LDMGF+  +  I S  P   
Sbjct: 134 KRQQPQLVIGTPGRVLDLIKSQALDIHTATKFVVDEADMTLDMGFLDQVDQIASHFPDDL 193

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT+  +L+   + +++NP   E+ T +     +++  ++T  +   +       
Sbjct: 194 QMMVFSATIPQKLRPFLKKYMENPVMEEIPTETVINPDVKNWLMSTKGRDKNQLIYQLL- 252

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +       ++F N K+  + L   L +QG  V  IHG ++ R R + +   ++   Q 
Sbjct: 253 --TMGEPYLALVFANTKERAIELATYLGEQGLKVALIHGGLEARRRKRTMRQIRDLDFQY 310

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V  V N D+P+  E +IHR+GRTGR G  G A TL A  +   I 
Sbjct: 311 VVATDLAARGIDIDGVSLVINDDIPSDLEYFIHRVGRTGRNGMPGTAITLYAPSEDGLIA 370

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +E   E+ + ++  ++             + N++R+   +     GF ++ K       
Sbjct: 371 KLE---ERGIKFVPKEIRHGRIVTTHDRNRRQNYSRRQAKLDPSMKGFVKKTKKKVKPGY 427

Query: 419 HIPLKESEKISKLQQDIQE 437
              +K + +  + Q+  QE
Sbjct: 428 KKRIKRAIREDEQQKRKQE 446


>gi|239613981|gb|EEQ90968.1| ATP-dependent RNA helicase DBP4 [Ajellomyces dermatitidis ER-3]
 gi|327353332|gb|EGE82189.1| ATP-dependent RNA helicase DBP4 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 810

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 125/453 (27%), Positives = 202/453 (44%), Gaps = 24/453 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL LS   +  +  + +   T IQ K IP  L+  D+ G A+TG+GKT +F++P+L +
Sbjct: 51  FSDLPLSEPTLNGLSASHFKSLTDIQAKAIPHALKGRDILGAAKTGSGKTLAFLVPLLEL 110

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         L+L PTRELA Q+ +   K G+++  +  L+IGG   + + ++L R
Sbjct: 111 LYRKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHTFSAGLVIGGKSLQEEQERLGR 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +           N+I++LV+DEADR++DMGF   +  I   +P  RQT+
Sbjct: 171 MNILVCTPGRMLQHMDQTAAFDTNHIQLLVLDEADRIMDMGFQSTVDAIIDHLPKERQTM 230

Query: 182 LFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT T ++      +           T +S                 K   L   +  
Sbjct: 231 LFSATQTKKVSDLARLSLRNPEYISVHETAASATPAKLQQNYIVTPLPEKLDTLWSFIRS 290

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S  +         ++   V       + G S+  +HG   Q +R+ I   F       + 
Sbjct: 291 SLKSKIMVFFSSGKQVRFVYESFRHMQPGISLLHLHGRQKQGARVDITKKFSAAKHACLF 350

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D+AARGLD P V  V   D P  A+ YIHR GRT R  R+G+A   +   +      +
Sbjct: 351 STDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFLEPSE--EAGML 408

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           ++L +KK+            P+EKI+I         N +  ++  F      Y  QK+ I
Sbjct: 409 KRLEQKKI------------PIEKINIRSKKQQSIKNQL--QNMCFKDPALKYLGQKAFI 454

Query: 421 PLKESEKISKLQQDI------QENDADSLGFRG 447
              +S  + K ++         E  A SLG  G
Sbjct: 455 SYVKSIHVQKDKEVFVVKGLPLEAYAASLGLPG 487


>gi|261193373|ref|XP_002623092.1| ATP-dependent RNA helicase DBP4 [Ajellomyces dermatitidis SLH14081]
 gi|239588697|gb|EEQ71340.1| ATP-dependent RNA helicase DBP4 [Ajellomyces dermatitidis SLH14081]
          Length = 810

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 125/453 (27%), Positives = 202/453 (44%), Gaps = 24/453 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL LS   +  +  + +   T IQ K IP  L+  D+ G A+TG+GKT +F++P+L +
Sbjct: 51  FSDLPLSEPTLNGLSASHFKSLTDIQAKAIPHALKGRDILGAAKTGSGKTLAFLVPLLEL 110

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         L+L PTRELA Q+ +   K G+++  +  L+IGG   + + ++L R
Sbjct: 111 LYRKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHTFSAGLVIGGKSLQEEQERLGR 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +           N+I++LV+DEADR++DMGF   +  I   +P  RQT+
Sbjct: 171 MNILVCTPGRMLQHMDQTAAFDTNHIQLLVLDEADRIMDMGFQSTVDAIIDHLPKERQTM 230

Query: 182 LFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT T ++      +           T +S                 K   L   +  
Sbjct: 231 LFSATQTKKVSDLARLSLRNPEYISVHETAASATPAKLQQNYIVTPLPEKLDTLWSFIRS 290

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S  +         ++   V       + G S+  +HG   Q +R+ I   F       + 
Sbjct: 291 SLKSKIMVFFSSGKQVRFVYESFRHMQPGISLLHLHGRQKQGARVDITKKFSAAKHACLF 350

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D+AARGLD P V  V   D P  A+ YIHR GRT R  R+G+A   +   +      +
Sbjct: 351 STDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFLEPSE--EAGML 408

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           ++L +KK+            P+EKI+I         N +  ++  F      Y  QK+ I
Sbjct: 409 KRLEQKKI------------PIEKINIRSKKQQSIKNQL--QNMCFKDPALKYLGQKAFI 454

Query: 421 PLKESEKISKLQQDI------QENDADSLGFRG 447
              +S  + K ++         E  A SLG  G
Sbjct: 455 SYVKSIHVQKDKEVFVVKGLPLEAYAASLGLPG 487


>gi|300795358|ref|NP_001177973.1| probable ATP-dependent RNA helicase DDX43 [Mus musculus]
 gi|149259807|ref|XP_001480973.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like isoform 1
           [Mus musculus]
          Length = 646

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 140/404 (34%), Positives = 222/404 (54%), Gaps = 14/404 (3%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI---LEKG 66
           P+V+  +  AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT S+++P           
Sbjct: 249 PEVMENIKRAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLSYLMPGFIHLDSQPLA 308

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTRELA QV     KY    +L    + GG   + Q + + +G D++
Sbjct: 309 REQRNGPGMLVLTPTRELALQVEAECSKYSYG-DLKSVCVYGGGDRDGQIQDVSKGVDII 367

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + ++  LV+DEAD+MLDMGF P I  I   V   RQT++ SAT
Sbjct: 368 IATPGRLNDLQMNNFVNLKSVTYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTIMTSAT 427

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
               ++++++++L+ P  + V T    A +     +    +  K    +Q  L++     
Sbjct: 428 WPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIITTEEEK-RTHIQTFLENMSPKD 486

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+F ++K    +L   L  +  SV ++HGN +Q  R K L NFK G +++++A+DLA+
Sbjct: 487 KVIVFVSRKAVADHLSSDLILRHISVESLHGNREQSDREKALENFKTGKVRILIATDLAS 546

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLD+ D+ HV+N+D P   E Y+HR+GRTGRAGR G + TL+ + D +    +  ++E+
Sbjct: 547 RGLDVHDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGMSITLITRNDWRVATELINILER 606

Query: 367 KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
                    ++ N P E + +A+   A K     +K  G  + K
Sbjct: 607 ---------ANQNIPEELVLMAERYKANKLKREMEKKMGRPQGK 641


>gi|330038909|ref|XP_003239737.1| eukaryotic initiation factor 4a [Cryptomonas paramecium]
 gi|327206662|gb|AEA38839.1| eukaryotic initiation factor 4a [Cryptomonas paramecium]
          Length = 390

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 117/377 (31%), Positives = 189/377 (50%), Gaps = 7/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++GL+ K+V  +   GY KP+ IQ + I  +L++ DV   AQ+GTGKTA+FV+  L 
Sbjct: 18  SFDEMGLNDKLVQGIYGYGYEKPSLIQQRGILPLLKKRDVIAQAQSGTGKTATFVIGTLQ 77

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF-EAQNKKLE 120
            + +    + +     + PTRELA Q+  +F++ G +  +   + +GG          L+
Sbjct: 78  NINRTTHSICVLT---ITPTRELAFQIEQSFKEIGVHLKVKTQVCVGGTRLSRDIRYLLK 134

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+ D  +    ++  ++ ++IDEAD M   GF   I  I   VP     
Sbjct: 135 YNPRIIIATPGRLFDILSLNTKILKKLQYVIIDEADEMFSKGFKFQIYRIFKFVPKLCTI 194

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT+  E+ ++ E  +  P RI V     T E I        A   K        + 
Sbjct: 195 GLFSATLPKEIIQIVETIMNEPVRIFVKKNELTLEGI---KQFYIAVEEKWKLEAVCDIY 251

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   I++ N KK    L   +   GF V  +HG+I Q  R  I+ NF+ G  ++++
Sbjct: 252 RLMKITQSIVYVNSKKKAEWLAEKMSSNGFEVLCLHGSITQADRSAIMKNFRLGIRRVLI 311

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL +RG+D+  V  V N+D+P   E YIHRIGR+GR G+ G A  L+ K ++  +  I
Sbjct: 312 TTDLLSRGIDVQQVCLVINYDLPTSKEIYIHRIGRSGRFGKKGIAVNLLVKNEVFVLREI 371

Query: 361 EKLIEKKVDWLNGDLSS 377
           E      ++ +  D++ 
Sbjct: 372 ESYYNTTIEEMPLDINE 388


>gi|149714248|ref|XP_001504169.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX23
           (DEAD box protein 23) (100 kDa U5 snRNP-specific
           protein) (U5-100kD) (PRP28 homolog) isoform 1 [Equus
           caballus]
          Length = 820

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 141/434 (32%), Positives = 209/434 (48%), Gaps = 35/434 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q
Sbjct: 452 WITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 511

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 512 GFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMP 571

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            + Q          E    +    ++  R  V   ++                       
Sbjct: 572 VSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 631

Query: 215 --ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             +  E      +     +       +  Q      IIF NQKK    L  SLEK G++ 
Sbjct: 632 AGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNA 691

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHR
Sbjct: 692 CTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHR 751

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     AQH  
Sbjct: 752 IGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHKP 805

Query: 393 ARKNNPIPQKSTGF 406
                   ++ T F
Sbjct: 806 GTILTKKRREETIF 819


>gi|256273812|gb|EEU08734.1| Dbp2p [Saccharomyces cerevisiae JAY291]
          Length = 547

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 129/378 (34%), Positives = 209/378 (55%), Gaps = 4/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ KPT IQ +  P+ L   D+ GIA TG+GKT S+ LP + 
Sbjct: 114 TFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIV 173

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+G +  +    + GG+P   Q + L
Sbjct: 174 HINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDL 233

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG++++I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 234 SRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 293

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ-L 238
           TL++SAT   E+++++ ++L +P +++V +   +A       V   + + K+  L +   
Sbjct: 294 TLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLE 353

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             SQD     +IF + K+   ++   L + G+   AIHG+ DQR R  +L  F+ G   +
Sbjct: 354 TASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPI 413

Query: 299 MVASDLAARGL-DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           MVA+D+AARG+ ++  + +V N+D+P   E+Y+HRIGRTGRAG  G A +   +++    
Sbjct: 414 MVATDVAARGIGNVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLG 473

Query: 358 DAIEKLIEKKVDWLNGDL 375
             +  ++ +    +  +L
Sbjct: 474 AKLISIMREANQNIPPEL 491


>gi|225443496|ref|XP_002270644.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 709

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 139/424 (32%), Positives = 213/424 (50%), Gaps = 32/424 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  LSP+++ AV  AGY  P+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPMLT
Sbjct: 290 SWVESKLSPELLKAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLT 349

Query: 62  I-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                           P  +++ PTRELA Q+ D   K+     + V  ++GG   E Q 
Sbjct: 350 YISRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQG 409

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY---------- 166
            ++ +G +V+I TPGR++D   R   ++N    +V+DEADRM+DMGF P           
Sbjct: 410 FRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 469

Query: 167 -------IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
                             R T +FSATM   +++++  +L+NP  + + T     + I  
Sbjct: 470 SNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQ 529

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
             +              Q L  +   K  I+F N KK+   L   L+K G+ V  +HG  
Sbjct: 530 HVIMVKGSEK---MPKLQKLLDELGDKTAIVFINTKKSTDTLAKGLDKAGYRVTTLHGGK 586

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q  R   L  F+     ++VA+D+A RG+DIPDV HV N+D+P   E Y HRIGRTGRA
Sbjct: 587 SQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRA 646

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           G+ G A T +   D      +++++ +         S + P L + + ++       +  
Sbjct: 647 GKTGVATTFLTLHDSDVFYDLKQMLIQS-------NSPVPPELARHEASKFKPGSIPDRP 699

Query: 400 PQKS 403
           P+++
Sbjct: 700 PRRN 703


>gi|1183961|emb|CAA93395.1| RNA elicase [Saccharomyces cerevisiae]
          Length = 547

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 129/378 (34%), Positives = 209/378 (55%), Gaps = 4/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ KPT IQ +  P+ L   D+ GIA TG+GKT S+ LP + 
Sbjct: 114 TFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIV 173

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+G +  +    + GG+P   Q + L
Sbjct: 174 HINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDL 233

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG++++I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 234 SRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 293

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ-L 238
           TL++SAT   E+++++ ++L +P +++V +   +A       V   + + K+  L +   
Sbjct: 294 TLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLE 353

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             SQD     +IF + K+   ++   L + G+   AIHG+ DQR R  +L  F+ G   +
Sbjct: 354 TASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPI 413

Query: 299 MVASDLAARGL-DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           MVA+D+AARG+ ++  + +V N+D+P   E+Y+HRIGRTGRAG  G A +   +++    
Sbjct: 414 MVATDVAARGIGNVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLG 473

Query: 358 DAIEKLIEKKVDWLNGDL 375
             +  ++ +    +  +L
Sbjct: 474 AKLISIMREANQNIPPEL 491


>gi|70994152|ref|XP_751923.1| DEAD/DEAH box helicase [Aspergillus fumigatus Af293]
 gi|74671396|sp|Q4WPE9|PRP28_ASPFU RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|66849557|gb|EAL89885.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus Af293]
 gi|159125162|gb|EDP50279.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus A1163]
          Length = 796

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 136/436 (31%), Positives = 223/436 (51%), Gaps = 34/436 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            + + GL  +++  V   GY +PTPIQ   IP+ LQ  D+ G+A TG+GKTASF+LP   
Sbjct: 365 SWEESGLPKRLLELVDQVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLV 424

Query: 59  ----MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
               +  I E    +   P  ++L PTRELA Q+     K+ +     V  ++GG  FE 
Sbjct: 425 YISELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEE 484

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT--- 171
           Q   L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I    
Sbjct: 485 QAYSLRNGAEIIIATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 544

Query: 172 -----------------SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA 214
                                  RQT++++ATM   +++++  +L+ P  + + +     
Sbjct: 545 PVTNEKPDTEEAENSAAMRSHRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGSAGEAV 604

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +T+    V   A   K+   L  +L S +     I+F N K+N   +   +++ GFS   
Sbjct: 605 DTV-EQRVEMIAGEDKRKKRLADILSSGEFRPPIIVFVNIKRNCDAIAREIKQMGFSSVT 663

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++ N  E+Y HRIG
Sbjct: 664 LHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIG 723

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           RTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ    R
Sbjct: 724 RTGRAGKSGVAITFLGNEDADVMYDLKQML------MKSPISRVPEELRKHEAAQSKPNR 777

Query: 395 KNNPIPQKSTGFDRRK 410
                   S+GF  + 
Sbjct: 778 GLAKKSDDSSGFGTKS 793


>gi|301783663|ref|XP_002927245.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like
           [Ailuropoda melanoleuca]
 gi|281343724|gb|EFB19308.1| hypothetical protein PANDA_017010 [Ailuropoda melanoleuca]
          Length = 820

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 141/434 (32%), Positives = 209/434 (48%), Gaps = 35/434 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q
Sbjct: 452 WITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 511

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 512 GFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMP 571

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            + Q          E    +    ++  R  V   ++                       
Sbjct: 572 VSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 631

Query: 215 --ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             +  E      +     +       +  Q      IIF NQKK    L  SLEK G++ 
Sbjct: 632 AGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNA 691

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHR
Sbjct: 692 CTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHR 751

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     AQH  
Sbjct: 752 IGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHKP 805

Query: 393 ARKNNPIPQKSTGF 406
                   ++ T F
Sbjct: 806 GTILTKKRREETIF 819


>gi|156121051|ref|NP_001095672.1| probable ATP-dependent RNA helicase DDX23 [Bos taurus]
 gi|151554096|gb|AAI47903.1| DDX23 protein [Bos taurus]
 gi|296487810|gb|DAA29923.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Bos taurus]
          Length = 820

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 141/434 (32%), Positives = 209/434 (48%), Gaps = 35/434 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +++     + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q
Sbjct: 452 WITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 511

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 512 GFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMP 571

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            + Q          E    +    ++  R  V   ++                       
Sbjct: 572 VSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 631

Query: 215 --ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             +  E      +     +       +  Q      IIF NQKK    L  SLEK G++ 
Sbjct: 632 AGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNA 691

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           C +HG   Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHR
Sbjct: 692 CTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHR 751

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T + KED      +++ I      L   +SS  P L     AQH  
Sbjct: 752 IGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHKP 805

Query: 393 ARKNNPIPQKSTGF 406
                   ++ T F
Sbjct: 806 GTILTKKRREETIF 819


>gi|322507406|gb|ADX02860.1| rhlB [Acinetobacter baumannii 1656-2]
 gi|323518696|gb|ADX93077.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 389

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 201/377 (53%), Gaps = 6/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++  A+   G+ + TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 11  FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 70

Query: 63  LEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L     + +     PR LIL PTRELA Q+  + +   K  NL +  L+GG+ F+ Q K+
Sbjct: 71  LLNNPVQEQRFRGEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQ 130

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P  
Sbjct: 131 LDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRK 190

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q      + T     V     Q              +T        Y    +    L Q
Sbjct: 191 EQRQTLMFSAT-FSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQ 249

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  ++ +   +IF N++  V  L   L+K G+ V  + G I Q  R+K+L  FK+G   
Sbjct: 250 DILREEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHN 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +M+A+D+A RG+ +  V HV NF +P ++++Y+HRIGRTGRAG  G + + ++++D  ++
Sbjct: 310 IMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDAFYL 369

Query: 358 DAIEKLIEKKVDWLNGD 374
             IEK I KK+     D
Sbjct: 370 PEIEKAIGKKLPLTRLD 386


>gi|169795350|ref|YP_001713143.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AYE]
 gi|184158781|ref|YP_001847120.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii ACICU]
 gi|215482884|ref|YP_002325087.1| ATP-dependent RNA helicase rhlB [Acinetobacter baumannii
           AB307-0294]
 gi|239502877|ref|ZP_04662187.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AB900]
 gi|260554464|ref|ZP_05826685.1| superfamily II DNA and RNA helicase [Acinetobacter baumannii ATCC
           19606]
 gi|332850462|ref|ZP_08432782.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013150]
 gi|332871914|ref|ZP_08440326.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013113]
 gi|332875150|ref|ZP_08442983.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6014059]
 gi|169148277|emb|CAM86142.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter baumannii AYE]
 gi|183210375|gb|ACC57773.1| Superfamily II DNA and RNA helicase [Acinetobacter baumannii ACICU]
 gi|193077811|gb|ABO12683.2| ATP-dependent RNA helicase (DEAD box) [Acinetobacter baumannii ATCC
           17978]
 gi|213986779|gb|ACJ57078.1| ATP-dependent RNA helicase rhlB [Acinetobacter baumannii
           AB307-0294]
 gi|260411006|gb|EEX04303.1| superfamily II DNA and RNA helicase [Acinetobacter baumannii ATCC
           19606]
 gi|332730733|gb|EGJ62044.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013150]
 gi|332731128|gb|EGJ62429.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013113]
 gi|332736594|gb|EGJ67588.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6014059]
          Length = 383

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 201/377 (53%), Gaps = 6/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++  A+   G+ + TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 5   FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 63  LEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L     + +     PR LIL PTRELA Q+  + +   K  NL +  L+GG+ F+ Q K+
Sbjct: 65  LLNNPVQEQRFRGEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQ 124

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P  
Sbjct: 125 LDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRK 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q      + T     V     Q              +T        Y    +    L Q
Sbjct: 185 EQRQTLMFSAT-FSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQ 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  ++ +   +IF N++  V  L   L+K G+ V  + G I Q  R+K+L  FK+G   
Sbjct: 244 DILREEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHN 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +M+A+D+A RG+ +  V HV NF +P ++++Y+HRIGRTGRAG  G + + ++++D  ++
Sbjct: 304 IMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDAFYL 363

Query: 358 DAIEKLIEKKVDWLNGD 374
             IEK I KK+     D
Sbjct: 364 PEIEKAIGKKLPLTRLD 380


>gi|330837277|ref|YP_004411918.1| DEAD/DEAH box helicase domain-containing protein [Spirochaeta
           coccoides DSM 17374]
 gi|329749180|gb|AEC02536.1| DEAD/DEAH box helicase domain protein [Spirochaeta coccoides DSM
           17374]
          Length = 629

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 125/472 (26%), Positives = 210/472 (44%), Gaps = 27/472 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L   V+  +  AG+    P+Q + +P+ L   DV   ++TG+GKTA F++ +L
Sbjct: 1   MKFTELPLHHTVLEGIGQAGFSDCMPVQERVLPVSLAGKDVMIQSKTGSGKTAVFLITIL 60

Query: 61  TILEKGRARVRM------------PRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLI 107
               +                   P  LI+ PTRELA Q+ ++            V    
Sbjct: 61  EKYVRAAEERAKAAKDSPEAEKSLPVALIVSPTRELAVQIEEDARILSATLPGYRVGCFY 120

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG+ +  Q+K +  G D+ + TPGR+LD+    +L     +  V+DEADRM DMGF P I
Sbjct: 121 GGVGYGGQDKLIAEGCDLYVGTPGRLLDYHKMRRLDFRMFDTFVVDEADRMFDMGFYPDI 180

Query: 168 QNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           Q + S +    +      + T   +  +  +       E+          +      +  
Sbjct: 181 QKMFSSMRPVSERQTMLFSATLSTRVRNLAWSYMSSPEEIEVQPEEITVNKIQQELYHIS 240

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             +K  L  Q+L  ++     I    + K+V  +C  L   G+    + G++ Q+ R+  
Sbjct: 241 KDEKFRLFLQVLTKENPDNALIFTNTKAKSV-EVCKRLLLNGYKAEYLMGDMPQKKRLST 299

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           +   K+G I+ +VA+D+AARGL I D+  V N+D+P   ENY+HRIGRT RAG+ GK+ T
Sbjct: 300 IDRMKDGKIKFLVATDVAARGLQIDDLQLVVNYDIPEDFENYVHRIGRTARAGKTGKSIT 359

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID-------IAQHNHARKNNPIP 400
              +E I  ++AIE  I+ K+  +  +  SL    +K         +++  +A  ++   
Sbjct: 360 FADEEYIYGLEAIENYIQMKIPVVWPEEGSLPDVEDKSAGKTFRQLVSREEYAGHSHETI 419

Query: 401 QKSTGFDRR------KKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFR 446
                  RR       ++ S  +     K   K  +  Q  Q++        
Sbjct: 420 PGGNRTGRRGTRGPSSRSGSKSEGKREGKREGKRERPAQGAQDSPRKPAALP 471


>gi|317152644|ref|YP_004120692.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942895|gb|ADU61946.1| DEAD/DEAH box helicase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 551

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 132/362 (36%), Positives = 204/362 (56%), Gaps = 7/362 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
           DF +LGLS + + A+   G+  PTPIQ +TIPL+LQ   D+ G AQTGTGKTA+F LP++
Sbjct: 3   DFKELGLSEETLAALESKGFTCPTPIQERTIPLLLQGAVDIVGQAQTGTGKTAAFGLPII 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               +   RV+    L+L PTRELA QVAD          + V  + GG     Q K L+
Sbjct: 63  ETAVENAKRVQA---LVLTPTRELAIQVADEINSLKGKKRIRVLPVYGGQAIHMQLKALK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGRI+DH  RG L ++ ++  V+DEAD M +MGF+  ++ I       R+T
Sbjct: 120 SGVDVVVGTPGRIMDHLKRGTLHLDELDFFVLDEADEMCNMGFVDDVREILKSANTDRRT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  E+ ++++ F+ + + I V    +            +             + 
Sbjct: 180 LLFSATMPHEVMRIAKEFMGDYELITVKAEKNDIPLT---KQVFHEVADSDRFEALCRVV 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +    G++F   + +   +   L ++G+    IHG++ Q  R +IL  FK+  + ++V
Sbjct: 237 DAEPDFYGLVFTRTRADADRVASRLTERGYPAEPIHGDLSQARREEILGRFKKRLVTILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+PD+ HV NF +P   + ++HR GRTGRAG+ G A +L+A  + + +  I
Sbjct: 297 ATDVAARGIDVPDLTHVVNFALPQDPQTFVHRTGRTGRAGKEGVAISLIAPSEFRRLMFI 356

Query: 361 EK 362
            K
Sbjct: 357 TK 358


>gi|209519764|ref|ZP_03268550.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209499774|gb|EDZ99843.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 466

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 151/374 (40%), Positives = 217/374 (58%), Gaps = 5/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  V D  Y  PTP+Q+K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIDPLLRNVQDRNYQIPTPVQVKAIPAVLSGKDVMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +    V   R    +L PTRELA QV  +F  YGK  +L      GG+    Q  K
Sbjct: 61  QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIDYGKGLDLQFLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT TD+++ ++ N L+ P  I V+ P++TA  I            K    L   
Sbjct: 181 QTLLFSATFTDDIRAMAANILRGPVNISVSPPNATASKI---KQWVVPVDKKNKPDLFMH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L ++++ ++ ++F   +  V  L   L++ G++V  IHG+  Q +R++ L  FK   + +
Sbjct: 238 LVAENSWEHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTREVHM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEKKVDWLN 372
           AIE LI + +    
Sbjct: 358 AIEALIRQTLPRKE 371


>gi|156844185|ref|XP_001645156.1| hypothetical protein Kpol_1062p5 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380632|sp|A7TK63|DBP8_VANPO RecName: Full=ATP-dependent RNA helicase DBP8
 gi|156115814|gb|EDO17298.1| hypothetical protein Kpol_1062p5 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 431

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 117/428 (27%), Positives = 188/428 (43%), Gaps = 21/428 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGLS  +V ++       PT IQ   IP +L+  D  G A+TG+GKT +F  PML+
Sbjct: 3   DFKSLGLSRWLVESLNAMRITHPTAIQKHCIPEILKGRDCIGGAKTGSGKTIAFAGPMLS 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                         ++L PTRELA Q+A+ F   G + N+ V L++GG     Q  +L++
Sbjct: 63  QWSD---DPSGMFGVVLTPTRELAIQIAEQFTALGSSMNIRVCLVVGGESIVKQALELQK 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
               +I TPGR+  H       +      V        D+          S         
Sbjct: 120 KPHFIIATPGRLAHHILSSGEEVVGGLSRVKYLVLDEADLILTQTFAADLSTCIAKLPPK 179

Query: 182 L------FSATMTDELQ-----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  F+AT+TD+++        ++          N  +    +          ++ K
Sbjct: 180 QKRQTLLFTATITDQVRALQNAPAQDSKPPLFAYEVENVDNVAVPSTLKLEYLLVPEHVK 239

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L Q L        + I+F N+      L  +L      V ++H  + Q  R+  L  
Sbjct: 240 EAYLYQLLTCEDYKDSSVIVFVNRTTAAEVLRRTLRSLEVRVASLHSQMPQSERINSLQR 299

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+    ++++A+D+AARGLDIP V  V N+D+P   + +IHR GRT RAGR G A + V 
Sbjct: 300 FRANAARVLIATDVAARGLDIPTVELVINYDIPQDPDTFIHRSGRTARAGRSGDAISFVT 359

Query: 351 KEDIKHIDAIEKLIEKKVDWLNG--DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
             D+  I+AIE+ I KK+D      D + +   L K+       A++ + +  +   F  
Sbjct: 360 PRDVSRIEAIEERINKKMDECKKVHDTAVIRKALTKV-----TKAKRESLMDMEKANFGE 414

Query: 409 RKKNYSSQ 416
           ++K    +
Sbjct: 415 KRKTQKKK 422


>gi|226949308|ref|YP_002804399.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A2 str. Kyoto]
 gi|226844168|gb|ACO86834.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 376

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 141/368 (38%), Positives = 213/368 (57%), Gaps = 6/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+LGLS  ++  +     ++PTPIQ ++I  +   +DV   AQTGTGKT +F+LPM 
Sbjct: 2   IKFAELGLSDSIIDVLKKQRIIEPTPIQEESIMFIKNGNDVIAEAQTGTGKTLAFLLPMF 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      +   + LI+ PTRELA Q+ +   K  +  +L +    GG    +Q KKL+
Sbjct: 62  ENISP---DINAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH NR  L   +++ LV+DEAD ML MGF   +++I    P  RQT
Sbjct: 119 NNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E++K++   +++P+ I +     T + I            ++       + 
Sbjct: 179 LCFSATMNSEVKKLAYKNMRDPRLIIIEKEEVTLKNI---KQVLIETTDRRKQEDLCKIL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     IIFC  K+ V  L  +L K+G++   +HG+I Q  R +I+ +FK   IQ ++
Sbjct: 236 DEENPFMAIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLI 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HVFN+D+P  AE+YIHRIGRTGRAG  G  F  VA +D + +  I
Sbjct: 296 ATDVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLSII 355

Query: 361 EKLIEKKV 368
           E+ I+ K+
Sbjct: 356 EREIKFKI 363


>gi|224064557|ref|XP_002301515.1| predicted protein [Populus trichocarpa]
 gi|222843241|gb|EEE80788.1| predicted protein [Populus trichocarpa]
          Length = 807

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 138/362 (38%), Positives = 216/362 (59%), Gaps = 4/362 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D G SP+++ A+   GY KPTPIQ + +P+VL   D+ G+A+TG+GKTA+FVLPM+ 
Sbjct: 226 TFEDCGFSPQLMNAIAKQGYEKPTPIQCQALPIVLSGSDIIGMAKTGSGKTAAFVLPMIV 285

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       +   P  ++  PTRELA Q+    +K+ K++ + V+ + GG+    Q K+L
Sbjct: 286 HIMDQPELEKEEGPIGVVCAPTRELAHQIYLETKKFSKSHGIRVSAVYGGMSKLDQFKEL 345

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G +++I TPGR++D      L M+    LV+DEADRM D+GF P I++I   +   RQ
Sbjct: 346 KAGCEIVIATPGRLIDMLKMKALNMSRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  +++K++   L +P R+ V       E I        +   K   L+++L 
Sbjct: 406 TLLFSATMPRKIEKLAREILTDPVRVTVGEVGRANEDITQVVQVIPSDAEKLPWLIEKLP 465

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     ++F ++K  V ++   L ++ F V A+HG+ DQ SRM+IL  FK G   ++
Sbjct: 466 GMIDEGD-VLVFASKKATVDDIESQLAQKAFKVAALHGDKDQASRMEILQKFKSGVYHVL 524

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIKHID 358
           VA+D+AARGLDI  +  V NFD+    + ++HRIGRTGRAG + G A+TL+ +++ +   
Sbjct: 525 VATDVAARGLDIKSIKSVVNFDIAREMDVHVHRIGRTGRAGDKDGIAYTLITQKEARFAG 584

Query: 359 AI 360
            +
Sbjct: 585 EL 586


>gi|157130314|ref|XP_001661885.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108871945|gb|EAT36170.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 619

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 129/395 (32%), Positives = 201/395 (50%), Gaps = 16/395 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++ A+      KP+PIQ++ IP VL   D+ GIA TG+GKT  FVLP++ 
Sbjct: 181 SFREMKFPKAILAALEKRNIRKPSPIQVQGIPAVLSGRDLIGIAFTGSGKTLVFVLPIVM 240

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q  D  + Y ++  +        AL IGG+
Sbjct: 241 FSLEQELRLPFISKEGPYGLIICPSRELAKQTHDIIQYYCQHLQMSGMPEIRSALAIGGV 300

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
           P       +++G  +++ TPGR++D  ++  L ++    L +DEADRM+D GF   I+ I
Sbjct: 301 PVNDALATIQQGCHIMVATPGRLMDMLDKKLLKLDVCRYLCMDEADRMIDAGFEEDIRTI 360

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A               +
Sbjct: 361 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASMNVTQDVEYVKQ 416

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K++V  +   L  +G    AIHG  DQ  R + +  
Sbjct: 417 EAKVVYLLDCLQKTPPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERYRSVEG 476

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+     ++VA+D+A++GLD PDV HV N+D+P+  ENY+HRIGRTGR+G  G A T + 
Sbjct: 477 FRNQEKDVLVATDVASKGLDFPDVQHVINYDMPDDIENYVHRIGRTGRSGSKGLATTFIN 536

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
           K  +   +  ++ L+ +    +   L  L    EK
Sbjct: 537 KATEQFVLLDLKHLLIEAKQKVPPFLGELCSETEK 571


>gi|47086809|ref|NP_997777.1| probable ATP-dependent RNA helicase DDX5 [Danio rerio]
 gi|37362204|gb|AAQ91230.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Danio rerio]
          Length = 518

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 130/378 (34%), Positives = 199/378 (52%), Gaps = 3/378 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +      V+  +    +  PTPIQ +  P+ L   D+ GIAQTG+GKT S++LP +
Sbjct: 96  VKFHEANFPKYVMDVITKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAI 155

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +           P  L+L PTRELA QV     +YGK   +    + GG P   Q + 
Sbjct: 156 VHINHQPFLEHGDGPICLVLAPTRELAQQVQQVAAEYGKASRIKSTCIYGGAPQGPQIRD 215

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 216 LERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 275

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQ 237
           QTL++SAT   E+++++E+FL+   +I V     +A       V       K+   +   
Sbjct: 276 QTLMWSATWPKEVRQLAEDFLKEYIQINVGALQLSANHNILQIVDVCNDGEKEDKLIRLL 335

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                +     IIF   K+   +L   + + G+    IHG+ +Q+ R  +L+ FK G   
Sbjct: 336 EEIMSEKENKTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKAP 395

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V NFD PN +E+YIHRIGRT R+ + G A+T     ++K  
Sbjct: 396 ILIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQA 455

Query: 358 DAIEKLIEKKVDWLNGDL 375
             +  ++ +    +N  L
Sbjct: 456 HDLVSVLREAHQAINPKL 473


>gi|270016294|gb|EFA12740.1| hypothetical protein TcasGA2_TC002367 [Tribolium castaneum]
          Length = 668

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 130/379 (34%), Positives = 206/379 (54%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--L 60
           F +      ++  +L  G+ +PT IQ +  P+VL   D+ GIAQTG+GKT +++LP    
Sbjct: 78  FDEGNFPEYIMQVILKQGFAEPTAIQSQGWPVVLSGRDLVGIAQTGSGKTLAYMLPAVVH 137

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              ++   R   P  LIL PTRELA Q+     ++G    +    + GG P   Q + LE
Sbjct: 138 INNQQRPQRGEGPVALILAPTRELAQQIQKVAHEFGSTTMVRNTCIFGGSPKGPQARDLE 197

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 198 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRPDRQV 257

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   ++Q ++E FL +  ++ +   S  A       V    +  K+  L + L +
Sbjct: 258 LMWSATWPKQVQALAEEFLVDYIQVNIGGLSLAANHNIKQIVEVCEESEKEEKLCKLLKE 317

Query: 241 SQDTMKNGIIFC-NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 N II     KK V ++   + ++G++  +IHG+  Q  R  +LS F+ G   ++
Sbjct: 318 IGSDSCNKIIVFVETKKKVDDITKCIRREGYAAISIHGDKSQPERDYVLSEFRTGKSSIL 377

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV +V NFD PN +E+Y+HRIGRTGR  + G A+      + +    
Sbjct: 378 VATDVAARGLDVEDVKYVINFDYPNSSEDYVHRIGRTGRCQQAGTAYAFFTSNNQRQAKD 437

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +  ++E+    ++ +L  L
Sbjct: 438 LIAVLEEAGQNVSAELRDL 456


>gi|302915827|ref|XP_003051724.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732663|gb|EEU46011.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 714

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 126/445 (28%), Positives = 210/445 (47%), Gaps = 42/445 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ +  L P+++  V   GY +PTPIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 279 NWRESNLPPRLLSVVDQVGYKEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLV 338

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +          +   P  LIL PTREL  Q+    +K+ +        ++GG   E Q 
Sbjct: 339 YISDLPPLEDHNKNDGPYALILAPTRELVQQIETEAKKFAEPLGFRCVSIVGGHSLEEQA 398

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GA++++ TPGR++D   R  L++     +++DEADRM+D+GF   +  I   +P 
Sbjct: 399 YALRNGAEIIVATPGRLVDCIERRLLVLGQCCYVIMDEADRMIDLGFEESVNKILDALPV 458

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ--------- 227
           + +          +L K         ++  + T +      +                  
Sbjct: 459 SNEKPDTDDAENAQLMKRYLGGNDRYRQTMMYTATMPPVVEKIAKKYLRRPAVVTIGNAG 518

Query: 228 ---------------YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
                            ++   LQ++L S+      I+F N K+N   +   ++  G+S 
Sbjct: 519 EAVDTVEQRVEFVSGEDRRKKRLQEILSSEAFAPPIIVFVNIKRNCDAVARDIKAMGWSA 578

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
             +HG+  Q  R   L++ + G  Q++VA+DLA RG+D+PDV  V NF++    E+Y HR
Sbjct: 579 VTLHGSKTQEQREAALASVRAGHTQVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHR 638

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T +  ED  ++  +++++ K        +S +   L + + AQ   
Sbjct: 639 IGRTGRAGKSGVAITFLGNEDADNMYDLKQILSK------SSISKVPEELRRHEAAQSRP 692

Query: 393 ARKNNPIPQKSTGFDRRKKNYSSQK 417
            R          G  RR+K  +  K
Sbjct: 693 VR-------GGGGAARREKEEAPGK 710


>gi|302665680|ref|XP_003024449.1| hypothetical protein TRV_01412 [Trichophyton verrucosum HKI 0517]
 gi|291188502|gb|EFE43838.1| hypothetical protein TRV_01412 [Trichophyton verrucosum HKI 0517]
          Length = 816

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 124/455 (27%), Positives = 199/455 (43%), Gaps = 26/455 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F DL LS      +  + + + T IQ + IP  LQ  D+ G A+TG+GKT +F++P + 
Sbjct: 51  SFTDLPLSEPTRLGLSASHFKELTDIQSRAIPHALQGRDILGAAKTGSGKTLAFLVPVLE 110

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  K          LI+ PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L 
Sbjct: 111 NLYRKQWTEYDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLQEEQERLG 170

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +            NI++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 171 RMNILVCTPGRMLQHMDQTAAFDTGNIQMLVLDEADRIMDMGFQSTVDAIVEHLPKERQT 230

Query: 181 LLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT T ++      +           T SS   +             K   L   + 
Sbjct: 231 MLFSATQTKKVSDLARLSLQDPEYISVHQTASSATPSTLQQHYVVTPLPDKLDTLWSFIR 290

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S  +        +++   V       + G  +  +HG   Q +R+ I   F       +
Sbjct: 291 SSLKSKIIVFFSSSKEVRFVYEAFRQMQPGIPLLHLHGRQKQGARLDITHKFSASKNSCL 350

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKHID 358
            A+D+ ARGLD P V  V   D P  ++ YIHR+GRT R  R+G+A   +   E+I  + 
Sbjct: 351 FATDVVARGLDFPAVDWVIQLDCPEDSDTYIHRVGRTARYERNGRAVLFLDPSEEIGMLS 410

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +E   +KK+            P+EKI+I  +      + +  ++  F   +  Y  QK+
Sbjct: 411 RLE---QKKI------------PIEKINIRANKQQSIKHQL--QNMCFKDPQLKYLGQKA 453

Query: 419 HIPLKESEKISKLQQDIQ------ENDADSLGFRG 447
                +S  I K ++         E  A SLG  G
Sbjct: 454 FTSYVKSIHIQKDKEVFDVKALPLEEYAASLGLPG 488


>gi|323495782|ref|ZP_08100852.1| DNA and RNA helicase [Vibrio sinaloensis DSM 21326]
 gi|323319249|gb|EGA72190.1| DNA and RNA helicase [Vibrio sinaloensis DSM 21326]
          Length = 399

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 149/405 (36%), Positives = 228/405 (56%), Gaps = 7/405 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  A+   GY KPT IQ K IP ++   D+   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSKPITDAIQSLGYAKPTTIQNKAIPAIMHGEDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L KG   R +  R LIL PTRELA Q+    ++YG+N +LT   + GG+  + Q + L
Sbjct: 61  EKLAKGETQRKKRIRALILAPTRELAEQIDQKVKQYGQNLSLTSLAMYGGVDEKPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+LI TPGR+LD + +  +    +EILV+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDILIATPGRLLDLYGKRAVYFEEVEILVMDEADRMLDMGFIDDINKILDRLPTDIQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++++++ +++  + +P  I +    ++ + IE   +                 
Sbjct: 181 HLLFSATLSNKVRDLAKTAVHDPFEISIAANQASKKNIEQWLITVDKDKKSALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++     +IF   K     L   LEK+G +  A H    Q  R ++L++FK G IQ M
Sbjct: 238 IKENDWDQALIFIETKHGAAKLASQLEKRGITAEAFHSGRSQAIRKQLLADFKAGKIQYM 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ + ARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 IATGVGARGIDIEGLSRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFKNLCM 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           IE  +   ++    ++     P + + I+  N+  K+   P++ +
Sbjct: 358 IESRLGHLIER--REVEGF-KPRKPVPISILNYVPKHKRQPKEES 399


>gi|296411733|ref|XP_002835584.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629370|emb|CAZ79741.1| unnamed protein product [Tuber melanosporum]
          Length = 388

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 117/377 (31%), Positives = 195/377 (51%), Gaps = 16/377 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  +   GY  P+ +Q + I  + +  D    AQ+GTGKTA+F + +L 
Sbjct: 26  TFEAMHLKEGLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 86  VIDTA---VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDY 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L   +I++LV+DEAD +L+ GF   I ++   +P + Q +
Sbjct: 143 GQHVVSGTPGRVADMIRRRNLRTKHIKMLVLDEADELLNRGFREQIYDVYRYLPPSTQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           + SAT+  ++  ++  F+ +P RI V     T E ++  F+A   +  K   L       
Sbjct: 203 VVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDL--YD 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + +  F+V A+HG + Q+ R  I+  F++G  +++++
Sbjct: 261 TLTITQAVIFCNTRRKVDWLTEKMREANFTVSAMHGEMPQKERDAIMQEFRQGNSRVLIS 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+D+  V             NYIHRIGR+GR GR G A   V  ED++ +  IE
Sbjct: 321 TDVWARGIDVQQVSL-----------NYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIE 369

Query: 362 KLIEKKVDWLNGDLSSL 378
                ++D +  ++S L
Sbjct: 370 LFYSTQIDEMPMNVSDL 386


>gi|149914630|ref|ZP_01903160.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
           AzwK-3b]
 gi|149811423|gb|EDM71258.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
           AzwK-3b]
          Length = 470

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 152/373 (40%), Positives = 229/373 (61%), Gaps = 5/373 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--L 60
           F ++GL   +V  +   G  +PTPIQ   IP  L   DV G+AQTGTGKTA+F LP+   
Sbjct: 34  FEEMGLPGPLVKKLALMGITEPTPIQTHAIPFALDSEDVMGLAQTGTGKTAAFGLPLLAK 93

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + E G+   +  R+LIL PTRELA Q+ D      K+  + VAL++GG    AQ K+++
Sbjct: 94  LMEEPGKPAPKAVRSLILAPTRELAGQIRDTLLPLVKDTPIKVALVVGGASIGAQIKRMQ 153

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVL+ TPGR+LD  +R  L +++   LV+DEAD+MLD+GFI  ++ I  L+P TRQT
Sbjct: 154 MGTDVLVATPGRLLDLLDRRALSLSDTRFLVLDEADQMLDLGFIHALRKIAGLLPSTRQT 213

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  ++++++ ++L +PKR++V+ P   A+ +                +      
Sbjct: 214 MLFSATMPKQMEEIAGSYLTHPKRVQVSPPGKAADKVTQGVHFIAKAAKGDLLVELL--- 270

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   +  ++F   K     L   LE+ G++V AIHGN  Q  R + L  F++G ++++V
Sbjct: 271 DKHREELALVFARTKHGSDKLARKLEQAGYAVAAIHGNKSQGQRERALRAFRDGEVRVLV 330

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIPDV HV+NFD+PN  ENY+HRIGRT RAGR G A    A +++  +  I
Sbjct: 331 ATDVAARGLDIPDVKHVYNFDLPNVPENYVHRIGRTARAGRDGAAVAFCAPDEMGELKDI 390

Query: 361 EKLIEKKVDWLNG 373
           +K+++  +  L+G
Sbjct: 391 QKVMKMSIPVLSG 403


>gi|317051436|ref|YP_004112552.1| DEAD/DEAH box helicase domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316946520|gb|ADU65996.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum
           S5]
          Length = 522

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 127/395 (32%), Positives = 202/395 (51%), Gaps = 8/395 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L  +++ A+ D G+   TPIQ + +P  ++  D  G AQTGTGK+A+F++ ++  
Sbjct: 108 FHDLNLPEELMHAIYDLGFAYCTPIQEQVLPRAIEGKDAIGKAQTGTGKSAAFLMTIICR 167

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK- 118
                + +A +  PR LIL PTRELA Q++ +     +   L +  L GG+    Q ++ 
Sbjct: 168 LLSRPQEKASIGRPRALILAPTRELAMQISKDAHDLCRYTPLKIVTLFGGMDMNKQRQRL 227

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                D+++ TPGR+LD   +  + +  +EILVIDEADRMLDMGFIP ++ I +      
Sbjct: 228 ENEAVDIVVATPGRLLDLKYQKCVFLGKVEILVIDEADRMLDMGFIPDVRQIVNSTMPKH 287

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
                  + T    +V+           +        T+E      Y    ++   L   
Sbjct: 288 LRQTLLFSAT-LSNEVTRLASAWMTEPFMVEIEPEQVTVETVDQLVYITTREEKFTLLWN 346

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +Q  +   I+F N++    +L   L + G +   + G + Q  R++ L NF+EG I +
Sbjct: 347 TINQANLTRVIVFANRRDETRHLSEKLTRYGVTNAILSGEVPQAKRIRTLENFREGKIAV 406

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A RG+ +  + HV N+++P   E+Y+HRIGRTGRAG  G + +   + D  +I 
Sbjct: 407 LVATDVAGRGIHVDSISHVINYNLPENPEDYVHRIGRTGRAGASGISVSFACENDSFYIP 466

Query: 359 AIEKLIEKKVD-WLNGD--LSSLNPPLEKIDIAQH 390
           AIE  I KK+     GD  L  L  P +K    Q 
Sbjct: 467 AIEDYIGKKLTCKYPGDELLRPLPAPQKKEAAPQE 501


>gi|297675282|ref|XP_002815615.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 2
           [Pongo abelii]
          Length = 705

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 130/422 (30%), Positives = 211/422 (50%), Gaps = 18/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 269 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 328

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             + +          ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 329 AHMMRDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGH 388

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 389 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 448

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       V    Q+SK
Sbjct: 449 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSK 508

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 509 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 566

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 567 FRYGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 626

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L      +   LE+I  + +      +         D RK
Sbjct: 627 LESDNH------LAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTRK 680

Query: 411 KN 412
             
Sbjct: 681 GK 682


>gi|297675280|ref|XP_002815614.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 1
           [Pongo abelii]
          Length = 725

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 130/422 (30%), Positives = 211/422 (50%), Gaps = 18/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 289 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 348

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             + +          ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 349 AHMMRDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGH 408

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 409 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 468

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       V    Q+SK
Sbjct: 469 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSK 528

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 529 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 586

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 587 FRYGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 646

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            E   H      L +  V  L      +   LE+I  + +      +         D RK
Sbjct: 647 LESDNH------LAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTRK 700

Query: 411 KN 412
             
Sbjct: 701 GK 702


>gi|190149870|ref|YP_001968395.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307249764|ref|ZP_07531742.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307263195|ref|ZP_07544815.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915001|gb|ACE61253.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306858179|gb|EFM90257.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306871412|gb|EFN03136.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 406

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 123/398 (30%), Positives = 201/398 (50%), Gaps = 6/398 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   V+ A+   G+   TPIQ KT+P+ L   D+ G AQTGTGKT +F++     
Sbjct: 10  FIDFPIHENVLAALDSKGFEFCTPIQAKTLPITLAGQDIAGQAQTGTGKTLAFLIATFHY 69

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                       PR +IL PTRELA Q+  + E   K+ +L +AL  GG  ++ Q + +E
Sbjct: 70  LLTNDSETNKNQPRAIILAPTRELAVQIGSDAELLVKHSDLKLALAYGGDGYDKQVQAIE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ T GR++D+  +G + ++ ++++V+DEADRM D+GFI  I+ +    P   Q 
Sbjct: 130 QGVDILVGTTGRVIDYVKQGIINLDKVQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEQR 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L    + T   +     +        +        T        +   ++    L   L 
Sbjct: 190 LTMLFSATLSPRVRELAYEDMDNAQYI-EIEPLQRTGHRIKEELFYPSNEDKMALLLTLL 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     +IF N K     + + L   G  V  + G+I Q+ R+ +L +F +G + ++V
Sbjct: 249 EEEWPDRCMIFANTKHKCEEIWNYLVADGHRVGLLTGDIAQKKRLALLDSFTKGQLDILV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL IP+V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +    ++ AI
Sbjct: 309 ATDVAARGLHIPEVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISFACERYAVNLPAI 368

Query: 361 EKLIEKKVDWLNGD---LSSLNPPLEKIDIAQHNHARK 395
           E  I   +     D   L +L  P        +   ++
Sbjct: 369 EAYIGHHIPVSQYDSGALLTLPKPTRSRTTRSYQTKKR 406


>gi|255319460|ref|ZP_05360674.1| ATP-dependent RNA helicase RhlB [Acinetobacter radioresistens SK82]
 gi|262378516|ref|ZP_06071673.1| superfamily II DNA and RNA helicase [Acinetobacter radioresistens
           SH164]
 gi|255303400|gb|EET82603.1| ATP-dependent RNA helicase RhlB [Acinetobacter radioresistens SK82]
 gi|262299801|gb|EEY87713.1| superfamily II DNA and RNA helicase [Acinetobacter radioresistens
           SH164]
          Length = 383

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 128/377 (33%), Positives = 203/377 (53%), Gaps = 6/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L PK+  A+   G+ + TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 5   FETLNLHPKLKKAIDALGFKEMTPIQQKVLNYTLAGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 63  LEKGRARVRMPRTL----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L     + +  R      IL PTRELA Q+  + ++  K  +L +  L+GG+ F+ Q K+
Sbjct: 65  LLNNPIKEQRYRGEARALILAPTRELALQIESDAKELTKFTDLHLVTLLGGVDFDKQKKQ 124

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             +   D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P  
Sbjct: 125 LDQNFVDIIVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPRK 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q      + T     V     Q              +T        Y   ++    L Q
Sbjct: 185 EQRQTLMFSAT-FSYDVLNLAQQWLFEPVTVEIEPEKKTNADVEQRVYMVANRDKYKLLQ 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   + ++  +IF N++  V  L   L+K G+ V  + G I Q  R+K+L  FK G   
Sbjct: 244 EILRDEPIEKVMIFANRRDQVRRLYDHLKKDGYKVVMLSGEIAQDKRLKMLDQFKNGKHN 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +M+A+D+A RG+ + +V HV NF +P ++++Y+HRIGRTGRAG  G + + ++++D  ++
Sbjct: 304 IMIATDVAGRGIHVDNVSHVINFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDAFYL 363

Query: 358 DAIEKLIEKKVDWLNGD 374
            AIEK I +K+     D
Sbjct: 364 PAIEKAIGQKLPLTRLD 380


>gi|242015175|ref|XP_002428249.1| ATP-dependent RNA helicase DDX54, putative [Pediculus humanus
           corporis]
 gi|212512810|gb|EEB15511.1| ATP-dependent RNA helicase DDX54, putative [Pediculus humanus
           corporis]
          Length = 723

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 125/372 (33%), Positives = 197/372 (52%), Gaps = 3/372 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G S  V+  +   GY  PTPIQ K+IPL+LQ  DV  +A+TG+GKTA F+LPM   
Sbjct: 29  FQAFGFSFPVLKGIQKRGYKIPTPIQRKSIPLILQGRDVVAMARTGSGKTACFLLPMFEK 88

Query: 63  LEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L     + R+     IL PTRELA Q     ++ GK   L    ++GG   + Q   +  
Sbjct: 89  LINKTPKSRLGVRALILSPTRELALQTVKFIKELGKFTKLKALAILGGDSMDQQFGAIHE 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR L      +L + ++E +V DEADR+ +MGF   ++ I   +  +RQT+
Sbjct: 149 NPDIIVATPGRFLHICVEMELKLTSVEYVVFDEADRLFEMGFGEQLKEILDRLGVSRQTV 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L   ++  L NP  + ++  +   E      V    ++ +K A L  LL  
Sbjct: 209 LFSATLPKLLVDFAKAGLVNPVLLRLDVETKIPEM--LDLVYFSVKHDEKLAALLCLLNL 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  +IF   K +V  +   LEK   S   I+ ++D  +R    + F+     +++ 
Sbjct: 267 LPKNTQTLIFVATKHHVEYIHKILEKANISSSYIYSDLDPTARKINAAKFQNKVCSVLIV 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP + +V N+  P + + ++HR+GR  RAGR G AF+LV  E+  +I  + 
Sbjct: 327 TDVAARGVDIPQLDYVINYHFPAKPKLFVHRVGRCARAGRTGTAFSLVCSEEFPYIIDLH 386

Query: 362 KLIEKKVDWLNG 373
             + KK++ L+ 
Sbjct: 387 LFLGKKINLLDK 398


>gi|119946798|ref|YP_944478.1| ATP-dependent RNA helicase RhlB [Psychromonas ingrahamii 37]
 gi|189040034|sp|A1SZG4|RHLB_PSYIN RecName: Full=ATP-dependent RNA helicase rhlB
 gi|119865402|gb|ABM04879.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 418

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 135/403 (33%), Positives = 204/403 (50%), Gaps = 8/403 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L   ++  +   GY   TPIQ  ++P+ L   D+ G AQTGTGKT +F+  +  
Sbjct: 10  KFADLPLEKSLISGLTSQGYEYCTPIQALSLPITLTGKDIAGQAQTGTGKTLAFLPAVFH 69

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +    R   PR +IL PTRELA Q+  +        NL + L  GG   E Q  
Sbjct: 70  HLLTNAQPENRRKNQPRAIILAPTRELAIQIHKDAMVLASMSNLRLGLAYGGEKVEIQRT 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KLE+G D+LI T GR +D   +G + M +I+ +V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 KLEKGVDILIGTTGRTIDFVKQGVIDMGSIQSVVLDEADRMFDLGFIKDIRYLFRRMPEA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +  L    + T   +     F        +        T  +     +   ++   LL  
Sbjct: 190 KSRLNMLFSATLSHKVQELAFEHMNDPESIQIEPEVM-TSVNITEELFYPSNQDKILLLL 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +D     I+F N K     +   L   G     + G++ Q  R+KIL  F +G I 
Sbjct: 249 SLIEEDWPDKAIVFANTKHTCEKVWGYLAGDGLRTGLLTGDVPQNKRLKILQQFTDGEID 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL IP V HVFNFD+P+  E+Y+HRIGRTGRAG  G A +   ++ + ++
Sbjct: 309 ILVATDVAARGLHIPKVSHVFNFDLPDDCEDYVHRIGRTGRAGEKGLAISFACEKYVFNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNN 397
            AIE+ I+  +     D +++    P ++      H ++RK+N
Sbjct: 369 PAIEEYIKHPIPCSEYDKNAMLDSLPVMKVTKYKAHPNSRKDN 411


>gi|238026875|ref|YP_002911106.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1]
 gi|237876069|gb|ACR28402.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1]
          Length = 524

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 145/389 (37%), Positives = 217/389 (55%), Gaps = 23/389 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 41  SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 100

Query: 62  IL--------------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL 101
                                 ++    V  P  L+L PTRELA QV      YGK+   
Sbjct: 101 RFAQLQKTQAQQPREPQSGDRRQRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRR 160

Query: 102 -TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160
                ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRMLD
Sbjct: 161 LRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLD 220

Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
           MGFI  I+ I +  P TRQT+LFSAT+  ++  ++   L+ P+RIE+         I   
Sbjct: 221 MGFIDDIETIVAATPATRQTMLFSATLDGKIGSLTSRLLKEPERIEIVQKLEARTNIAQT 280

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
                 +  K    L   L   D +   IIF   K +   L   L   GF   A+HG++ 
Sbjct: 281 VHYVDDRDHKDR--LLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLP 338

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTGRAG
Sbjct: 339 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 398

Query: 341 RHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           R G A +LV   +   +  IE+ +   + 
Sbjct: 399 RSGIAVSLVHHAEQGALKRIERFVRTPLP 427


>gi|150864621|ref|XP_001383517.2| ATP-dependent rRNA helicase RRP3 [Scheffersomyces stipitis CBS
           6054]
 gi|149385877|gb|ABN65488.2| ATP-dependent rRNA helicase RRP3 [Scheffersomyces stipitis CBS
           6054]
          Length = 396

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 135/402 (33%), Positives = 213/402 (52%), Gaps = 7/402 (1%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
             + KPTPIQ + IP  L+  D+ G+AQTG+GKTA+F +P+L  L + +        L+L
Sbjct: 1   MKFSKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQTPYFG---LVL 57

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            P RELA Q+ + F+  G    +    L+GG+    Q + L R   ++I TPGRI+DH  
Sbjct: 58  APARELAYQIKETFDALGSTMGVRTVCLVGGMDMMDQARDLMRKPHIIIATPGRIMDHLE 117

Query: 139 RGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
             K      ++  V+DEAD++LD+ F P +  I   +P  R T LFSATMT++++K+   
Sbjct: 118 HTKGFSLKMLKYFVMDEADKLLDLEFGPVLDKILKQIPSKRTTYLFSATMTNKIEKLQRA 177

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
            L NP R+ V++   TA+ +     +               L ++   K+ IIF   + +
Sbjct: 178 SLHNPVRVAVSSKYQTADNL---IQSMMLVSDGYKNTYLIHLLNEFVGKSIIIFARTRAH 234

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
                      GFS   +HG++ Q  R+  L+ FK GT  +++A+D+AARGLDIP V  V
Sbjct: 235 TQRTSILCRILGFSAVPLHGDLTQAQRLGSLNKFKSGTANILIATDVAARGLDIPSVDVV 294

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
            N+D+P  ++ Y+HR+GRT RAGR GK+ +LV + D++    IE+ I+KK+        +
Sbjct: 295 INYDIPTDSKAYVHRVGRTARAGRSGKSISLVTQYDLEMYLRIEQSIQKKLPKDPSPPKA 354

Query: 378 LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +   L       +  A +      + T   RR K+   ++ H
Sbjct: 355 MLDALHVHVDRAYAEAIRQTKEFHEKTRRGRRGKDDKDREEH 396


>gi|143456125|sp|Q0J7Y8|RH45_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 45
          Length = 947

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 120/448 (26%), Positives = 209/448 (46%), Gaps = 31/448 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   GL+ K++  +   G+ KP PIQ + +P+++   D  GIA+TG+GKT +FVLPML 
Sbjct: 286 TWVQSGLTSKLLDTIKKLGFEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLR 345

Query: 62  ILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++     V    P  LI+ PTREL  Q+  + +K+ K+  +    + GG     Q  +L
Sbjct: 346 HVKDQPPVVPGDGPIGLIMAPTRELVVQIHSDIKKFAKSLGINCVAIYGGSGVAQQISEL 405

Query: 120 ERGADVLICTPGRILDHFNR---GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D           +  +  LV+DEADRM DMGF P I  I      
Sbjct: 406 KRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNTRP 465

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSA    +++ ++   L  P  I+V   S   +      +      +++   L 
Sbjct: 466 DRQTVLFSAIFPRQVEILARKVLTKPVEIQVGGRSVVNKD--ITQLVEVRPENERFLRLL 523

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL         ++F + +    +L   L ++G+   ++HG                   
Sbjct: 524 ELLGEWFDRGKILVFVHSQDKCDSLLKDLFQRGYPCLSLHGGK----------------- 566

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
                   +       ++  V N+DVPN  E+Y+HR+GRTG AGR G A T ++ E+ ++
Sbjct: 567 --DQTDRESTLADFKSNLELVVNYDVPNHYEDYVHRVGRTGHAGRKGFAVTFISDEEERY 624

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              + K +E     +  DL  L    ++          + +      +GF   ++   ++
Sbjct: 625 APDLAKALELSEQAVPQDLKGLA---DRFMAKVKQGTEQAHGTGYGGSGFKFNEEEDEAR 681

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +S    +  E     ++D  ++D+D  G
Sbjct: 682 RSAKKAQAREY--GYEEDKSDSDSDEEG 707


>gi|323700588|ref|ZP_08112500.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. ND132]
 gi|323460520|gb|EGB16385.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
           ND132]
          Length = 551

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 138/395 (34%), Positives = 209/395 (52%), Gaps = 16/395 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
            F +LGLS   + A+   G+  PTPIQ  TIP +L    D+ G AQTGTGKTA+F LP++
Sbjct: 3   SFQELGLSGSTLDALTSKGFTAPTPIQALTIPRLLSGTRDIVGQAQTGTGKTAAFGLPVI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E+G  RV+    LIL PTRELA QVA+  +       + V  + GG     Q K L 
Sbjct: 63  EAAEEGARRVQS---LILAPTRELAIQVAEEIDSLKGGKRIRVLPVYGGQAIHMQLKALR 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DV++ TPGRI+DH  RG L ++ +   ++DEAD M +MGF+  ++ I +     R+T
Sbjct: 120 QGVDVVVGTPGRIMDHLERGSLRIDQLTYFILDEADEMCNMGFVDDVRAILASANADRRT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSATM  E+  ++  F+ +   + V    S A          +             + 
Sbjct: 180 LMFSATMGGEVMAIAREFMGDFDVVRVKPEVSDAPLTRQ---VFHEIADSDRFEALCRVI 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  G++F   + +   +   L ++G+    IHG+++Q  R KILS F+E    ++V
Sbjct: 237 DARPDFYGLVFVRTRADADLVAARLTQRGYPAEPIHGDLNQAQREKILSGFRERKATILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+PD+ HV NF +P   + ++HR GRTGRAG+ G A TL+   + + +  I
Sbjct: 297 ATDVAARGIDVPDLTHVVNFALPQDPQTFVHRTGRTGRAGKQGVAITLITPNEFRKLMYI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
            K     +            PL +I+   H+  RK
Sbjct: 357 AKSTGIDI---------AKEPLPRIEDVIHSKKRK 382


>gi|304403873|ref|ZP_07385535.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304346851|gb|EFM12683.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 500

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 137/410 (33%), Positives = 213/410 (51%), Gaps = 19/410 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ LG+S ++   +   G  +PTP+Q K IPLVL   DV   AQTGTGKT +F LP+L 
Sbjct: 4   TFSTLGVSQELTSVLSSYGITEPTPVQHKAIPLVLNGADVIVQAQTGTGKTLAFALPILE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            ++         + LIL PTRELA Q+     K  K     +    GG   E+Q +K   
Sbjct: 64  RIDTT---KNHTQALILTPTRELAIQITTELNKLAKTVGANILAAYGGQDVESQIRKLRN 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+LDH  R  + +  I +LV+DEAD+ML MGF+P ++ I S +P   + 
Sbjct: 121 SWPHIVIATPGRLLDHLRRETIRLGKIRMLVLDEADQMLHMGFLPDVETIVSSMPRQHRQ 180

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSATM  +++K+   ++  P  + +     T + I            ++       L
Sbjct: 181 TMLFSATMPAQIRKLGAEYMNGPTDVNITPEKVTVDKI---RQVAIETTDRRKEDTLVEL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      ++FC  K     L  +L+++G S   +HG++ Q  R +++  F++  +Q++
Sbjct: 238 IGKYQPYLAVVFCRTKVRAKKLNEALQERGISSDELHGDLSQAKREQVMKRFRQARLQVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+  V HVFN+DVP   E Y+HRIGRTGRAG  G A TLV+  DI  +  
Sbjct: 298 IATDVAARGLDVEGVSHVFNYDVPQDPETYVHRIGRTGRAGNEGMAVTLVSSHDIGAVAN 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           I+K +  K++             +  D+A+     +  P  Q +     R
Sbjct: 358 IQKTLGVKIEL-----------RQDSDVARGAVPVRVKPDRQGAKAEQER 396


>gi|242019547|ref|XP_002430222.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212515318|gb|EEB17484.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 763

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 135/378 (35%), Positives = 211/378 (55%), Gaps = 3/378 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--L 60
           FA  G    ++  +  + Y  PTPIQ + +P  L   D+ GIA+TG+GKTA+FV PM   
Sbjct: 271 FAYFGFDEALMKVIRKSEYTTPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFVWPMLIH 330

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + +K       P  LIL PTREL+ Q+    +K+GK YN+ V    GG     Q+K LE
Sbjct: 331 IMDQKELKPGDGPIGLILAPTRELSQQIYSEAKKFGKVYNIQVICCYGGGSKWEQSKALE 390

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA++++ TPGR++D        +  +  LV+DEADRM DMGF P +++I + V   RQT
Sbjct: 391 NGAEIVVATPGRMIDLIKMKATNLKRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQT 450

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT   ++++++   L +P RI         E +    +    Q +K   L   +++
Sbjct: 451 LLFSATFKKKVERLARVVLTDPIRIVQGDVGEANEDVIQNVLILPNQAAKFMWLTSHIVE 510

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + +IF  +K N   + ++L+ + F V  +HG++DQ  R K+++ FK+  + ++V
Sbjct: 511 FLSNG-SLLIFVTKKVNAEEVANNLKLKEFDVLLLHGDMDQIERNKVITQFKKKEVSILV 569

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP +  V N+D+    + + HRIGRTGRAG  G A+TLV  +D +    +
Sbjct: 570 ATDVAARGLDIPHIKTVVNYDIARDIDTHTHRIGRTGRAGERGYAYTLVLNQDKEFAGHL 629

Query: 361 EKLIEKKVDWLNGDLSSL 378
            + +E     +   L  L
Sbjct: 630 VRNLEGANQEVPKSLMDL 647


>gi|261332683|emb|CBH15678.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 512

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 140/424 (33%), Positives = 234/424 (55%), Gaps = 6/424 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGL  +++ A  +AG+  PT IQ+ TIP+V +  D+ G+AQTG+GKT ++VLP++
Sbjct: 40  VTFKSLGLCEELIGACKEAGWRMPTRIQVATIPVVSEGRDIIGVAQTGSGKTGAYVLPLV 99

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   +A+V     L++ PTRELA QVA  F   G +  L VA L+GG     Q  +L 
Sbjct: 100 NWLLT-QAKVPYLSILVMVPTRELAQQVAAQFVMLGSSVGLRVATLVGGADMVDQACELS 158

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           R   V++ TPGR+ DH N  K      +  LV+DEAD+ML+M +   I  I   +P  RQ
Sbjct: 159 RRPHVVVGTPGRVKDHLNNTKGFQLVKLHALVLDEADKMLEMDYEKEINAILEHLPHNRQ 218

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT++ ++ ++    L +P  +EV+  ++T +T++  +V               L 
Sbjct: 219 TLLFSATLSTKIDRLQNASLNDPVLLEVHRKNTTVDTLKQYYVFAPFAQ---MLPYLHLY 275

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++++  + ++FC     V  +  +L   G     + G +DQ++R   L+ FKEG ++++
Sbjct: 276 LTRESGNHILVFCRSAALVHRITLTLRVLGHQALPLMGRMDQKNRNIALTKFKEGRVRIL 335

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A RGLDIP    V NF +P+R E+YIHR+GRT RAG  GKA  ++++ DI  +  
Sbjct: 336 VCTDVAQRGLDIPRTDVVVNFALPDRVEDYIHRVGRTARAGAQGKAVNIISQYDIVLLQK 395

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E     K +        +   L++++ A+    ++     Q++  F+R  +  ++ +  
Sbjct: 396 VEASTGVKCEEWPISDGDVAAVLQRVEDAEQEAVKEMRESDQEAK-FEREARQLTTARRA 454

Query: 420 IPLK 423
              +
Sbjct: 455 KRER 458


>gi|115454521|ref|NP_001050861.1| Os03g0669000 [Oryza sativa Japonica Group]
 gi|75327677|sp|Q7Y183|RH10_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 10
 gi|31126733|gb|AAP44655.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|53370642|gb|AAU89137.1| DEAD/DEAH box helicase domain containing protein [Oryza sativa
           Japonica Group]
 gi|108710302|gb|ABF98097.1| ATP-dependent RNA helicase DDX47, putative, expressed [Oryza sativa
           Japonica Group]
 gi|113549332|dbj|BAF12775.1| Os03g0669000 [Oryza sativa Japonica Group]
 gi|125545183|gb|EAY91322.1| hypothetical protein OsI_12939 [Oryza sativa Indica Group]
 gi|215695397|dbj|BAG90588.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 472

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 131/435 (30%), Positives = 224/435 (51%), Gaps = 28/435 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+ P++V A    G+ +PT IQ + IP  L+  D+ G+ QTG+GKT +F LP++ 
Sbjct: 42  TFAELGVVPELVAACDAMGWKEPTRIQAEAIPHALEGRDLIGLGQTGSGKTGAFALPIIQ 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   + + +     +L PTRELA Q+   FE  G    L+  +L+GG+    Q   L +
Sbjct: 102 AL-LKQDKPQALFACVLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVDRVQQAVSLAK 160

Query: 122 GADVLICTPGRI-LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+     +     +N ++ LV+DEAD++L++ F   + +I +++P  R+T
Sbjct: 161 RPHIVVGTPGRLLDHLTDTKGFSLNKLKYLVLDEADKLLNVEFQKALDDILNVIPKERRT 220

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT+++ K+    L+NP ++EV +  ST +T+   F    A Y     +      
Sbjct: 221 FLFSATMTNKVSKLQRACLRNPVKVEVASKYSTVDTLRQEFYFVPADYKDCFLVHVLNEL 280

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +    IF    ++   L  +L    F   +I G + Q  R+  L+ FK     +++
Sbjct: 281 PGSMIM---IFVRTCESTRLLALTLRNLRFKAISISGQMSQDKRLGALNRFKTKDCNILI 337

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A+RGLDI  V  V N+D+P  +++Y+HR+GRT RAG  G A +LV + +      I
Sbjct: 338 CTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLVNQYEAMWFKMI 397

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ------------HNHARKNN----------- 397
           EKL+  ++     D + +    E+I  ++            H   R+ N           
Sbjct: 398 EKLLGYEIPDRKVDNAEIMILRERISDSKRIALTTMKEGGGHKKKRRKNEDDEEEEERNA 457

Query: 398 PIPQKSTGFDRRKKN 412
           P+ +KS  F++ ++ 
Sbjct: 458 PVSRKSKSFNKSRRR 472


>gi|71747632|ref|XP_822871.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70832539|gb|EAN78043.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
          Length = 512

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 140/424 (33%), Positives = 234/424 (55%), Gaps = 6/424 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGL  +++ A  +AG+  PT IQ+ TIP+V +  D+ G+AQTG+GKT ++VLP++
Sbjct: 40  VTFKSLGLCEELIGACKEAGWRMPTRIQVATIPVVSEGRDIIGVAQTGSGKTGAYVLPLV 99

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   +A+V     L++ PTRELA QVA  F   G +  L VA L+GG     Q  +L 
Sbjct: 100 NWLLT-QAKVPYLSILVMVPTRELAQQVAAQFVMLGSSVGLRVATLVGGADMVDQACELS 158

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           R   V++ TPGR+ DH N  K      +  LV+DEAD+ML+M +   I  I   +P  RQ
Sbjct: 159 RRPHVVVGTPGRVKDHLNNTKGFQLVKLHALVLDEADKMLEMDYEKEINAILEHLPHNRQ 218

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT++ ++ ++    L +P  +EV+  ++T +T++  +V               L 
Sbjct: 219 TLLFSATLSTKIDRLQNASLNDPVLLEVHRKNTTVDTLKQYYVFAPFAQ---MLPYLHLY 275

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++++  + ++FC     V  +  +L   G     + G +DQ++R   L+ FKEG ++++
Sbjct: 276 LTRESGNHILVFCRSAALVHRITLTLRVLGHQALPLMGRMDQKNRNIALTKFKEGRVRIL 335

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A RGLDIP    V NF +P+R E+YIHR+GRT RAG  GKA  ++++ DI  +  
Sbjct: 336 VCTDVAQRGLDIPRTDVVVNFALPDRVEDYIHRVGRTARAGAQGKAVNIISQYDIVLLQK 395

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E     K +        +   L++++ A+    ++     Q++  F+R  +  ++ +  
Sbjct: 396 VEASTGVKCEEWPISDGDVAAVLQRVEDAEQEAVKEMRESDQEAK-FEREARQLTTARRA 454

Query: 420 IPLK 423
              +
Sbjct: 455 KRER 458


>gi|260774084|ref|ZP_05882999.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260611045|gb|EEX36249.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 395

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 144/399 (36%), Positives = 228/399 (57%), Gaps = 7/399 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ +V + GY  PT IQ + IP++L+  D+   AQTGTGKTA FVLP+L
Sbjct: 1   MSFTQLGLNEALIKSVAELGYQTPTTIQTQAIPVILKGQDLIAAAQTGTGKTAGFVLPIL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVADN ++Y +   LT   + GG+  +AQ ++L
Sbjct: 61  DRLMQGQTQRKKRIRALILVPTRELAIQVADNVKQYAQYTELTSLAMYGGVDEQAQKQQL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR+LD + +  +  + IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDVLVATPGRLLDMYAQRAVHFDEIEVVVLDEADRMLDMGFIEAINKIIQRLPTEAQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++++++++++  +     I +    ++   I    +                 
Sbjct: 181 FLLFSATLSNKVRELAKTAVGEAHEISIAAHQASKSNITQWLITVDKDQKSALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      +IF   K     L   LEK+G +  A H    Q  R ++L++FK G I+ +
Sbjct: 238 IHEYQWDQALIFIETKHGAAKLAAQLEKRGIAAEAFHSGRSQAVREQLLADFKAGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ +AARG+DI ++  V N+D+P  A+ Y+HRIGRTGRA   G+A +LV+K++ K++  
Sbjct: 298 IATGVAARGIDIDELPRVVNYDLPFPADEYVHRIGRTGRAEAQGEAISLVSKDNFKNLCM 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           IE  +   ++    +++   P    + I+  N+  K+  
Sbjct: 358 IESRLGHLIER--REIAGFEPK-HPVPISILNYVPKHKR 393


>gi|170064174|ref|XP_001867417.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus]
 gi|167881558|gb|EDS44941.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus]
          Length = 663

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 120/378 (31%), Positives = 199/378 (52%), Gaps = 3/378 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--ML 60
           F + G    ++  +   GY +PT IQ     +     D+ GIA+TG+GKT +++LP  + 
Sbjct: 80  FEEGGFPSSILAEITRQGYKEPTQIQAVGWSIATSGRDMVGIAKTGSGKTLAYILPALIH 139

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +    R   P  L+L PTRELA Q+    + +G+  ++    + GG     Q   L 
Sbjct: 140 ISNQPRLMRGDGPIALVLAPTRELAQQIQQVCDDFGRRMSVMNTCIFGGASKMGQANDLR 199

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D    G   +     LV+DEADRMLDMGF P I+ I S +   RQ 
Sbjct: 200 RGVEIVIATPGRLIDFLESGTTNLRRTTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQV 259

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLL 239
           L++SAT   E++K++E FL++  +I + + +  A       +    +Y K+         
Sbjct: 260 LMWSATWPKEIRKLAEEFLRDYIQINIGSLNLAANENILQIIECCQEYEKESRLFKLLAE 319

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      I+F   K+ V  +   +++ G+    IHG+  Q+ R  +L+ F+     ++
Sbjct: 320 IGKQGDNKAIVFVETKRKVDQIAGIIKRNGWRADGIHGDKTQKDRDYVLNTFRRMNNGIL 379

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLD+ DV +V NFD PN  E+YIHRIGRTGR+   G A+T     +    + 
Sbjct: 380 VATDVASRGLDVDDVKYVINFDFPNNTEDYIHRIGRTGRSTNKGTAYTFFTPANSSKAND 439

Query: 360 IEKLIEKKVDWLNGDLSS 377
           + ++++    ++N +L  
Sbjct: 440 LIQVLKTANQYVNPELQE 457


>gi|294142025|ref|YP_003558003.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293328494|dbj|BAJ03225.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 427

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 161/414 (38%), Positives = 234/414 (56%), Gaps = 15/414 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P+++  + + GY +PTPIQ + IP +L   D+   AQTG+GKTA+F LP+L  
Sbjct: 13  FSSLSLRPELLQVLTELGYTQPTPIQTQAIPAILAGQDIMAGAQTGSGKTAAFALPILNK 72

Query: 63  LEKGRA----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
           L                    R L+L PTRELA QV  +F KY K   +  AL+ GG+  
Sbjct: 73  LTAQICLQKTEAQDSADKPAIRALVLTPTRELALQVHGSFVKYAKLTQVKSALVYGGVSI 132

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           +AQ + L  G D+L+ TPGR+LDH  RG L +N +E LV DEADRMLDMGF   I  I  
Sbjct: 133 DAQAQILAAGVDILVATPGRLLDHLRRGSLNLNQLEFLVFDEADRMLDMGFKDEIDAIVK 192

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +P TRQTLLFSAT  + +  +S++ L++PK+IEV                 YA  S + 
Sbjct: 193 QLPKTRQTLLFSATFDESIYGLSQSLLRDPKQIEVGE---RNAAAVEIDQRVYAVDSDRK 249

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L   L     ++  +IF  +K     L  +L K G S  A HG++ Q +R K+L  FK
Sbjct: 250 LALVTHLIESGNLQQVLIFSRKKLAADKLAANLTKAGISAQAFHGDLSQGAREKVLQGFK 309

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +G ++++VA+D+AARG+DI D+ +V N+++P +AE+Y+HRIGRTGRAG  G A TL+  E
Sbjct: 310 DGEVRVLVATDVAARGIDIIDLNYVINYELPYKAEDYVHRIGRTGRAGNKGLAITLLCSE 369

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
           D   ++ +E +++K++      L+   P L K         R ++    K   +
Sbjct: 370 DEHLLEEVEVVLDKRLP--QQWLAGFEPDLTKSAAEPRKGGRNSHKQRAKKRAY 421


>gi|195115577|ref|XP_002002333.1| GI13281 [Drosophila mojavensis]
 gi|193912908|gb|EDW11775.1| GI13281 [Drosophila mojavensis]
          Length = 649

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 123/382 (32%), Positives = 209/382 (54%), Gaps = 9/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L   V+  V+ +GYV PTPIQ  +IP++ +  D+   AQTG+GKTA+F+LP+L+
Sbjct: 236 SFDQARLRGSVLENVVKSGYVVPTPIQKVSIPVIAEGRDLMACAQTGSGKTAAFLLPILS 295

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +        +  P+ +I+ PTRELA Q+ +   K+  +  L ++++ GG  F+ QN+ +
Sbjct: 296 NILDESHDLEIGKPQAVIVSPTRELAIQIFNEARKFAYSTYLKISIVYGGTSFKYQNECI 355

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  VLI TPGR+LD  +R  +  N+   +V+DEADRMLDMGF   ++ I        +
Sbjct: 356 TKGCHVLIATPGRLLDFVDRTFITFNDTRFVVLDEADRMLDMGFSDSMRKIMHHQTMRAE 415

Query: 180 TL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
               +FSAT  +E+Q+++  FL+N   + +         ++     T  + +K     + 
Sbjct: 416 HQTLMFSATFPEEIQRMAGEFLRNYVFVTIGVVGGACSDVQQ----TIYEVNKFNKRSKL 471

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +   ++     I+F   K+    L     +  F   +IHG+  Q  R + L +FK GT++
Sbjct: 472 MEILREGADGTIVFVETKRAADFLASFFSETEFPTTSIHGDRLQSQREQALRDFKNGTMK 531

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKH 356
           +++A+ +A+RGLDI +V HV N+D+P+  ++Y+HRIGRTGR G  G+A +    + D   
Sbjct: 532 VLIATSVASRGLDIKNVKHVINYDMPSNIDDYVHRIGRTGRVGNSGRATSFFDPDQDRAI 591

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
              + K++E     +   L  +
Sbjct: 592 AGDLIKILEGSGQEVPDFLKEM 613


>gi|308808280|ref|XP_003081450.1| putative RNA helicase [Oryza sativa (ISS) [Ostreococcus tauri]
 gi|116059913|emb|CAL55972.1| putative RNA helicase [Oryza sativa (ISS) [Ostreococcus tauri]
          Length = 734

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 128/408 (31%), Positives = 204/408 (50%), Gaps = 7/408 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F D G S +++   + A + KP+PIQ ++ P+V+   D+ GIA TG+GKT +F +P + 
Sbjct: 324 TFEDAGFSKELLR--VTANFQKPSPIQAQSWPIVMSGRDMVGIAATGSGKTLAFGMPALT 381

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I  +   +   P  L+L PTRELA Q A  F+  G+   +    + GG P   Q   ++
Sbjct: 382 QIRSQPPCKPGQPICLVLAPTRELAQQTAKVFDDAGEASGVRCVCVYGGAPKYEQKNAMK 441

Query: 121 RGAD--VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            G    V++ TPGR+ D    G + ++ + +LV+DEADRMLD+GF P I+ I       R
Sbjct: 442 AGGGAAVIVATPGRLRDFMEEGVIKLDRVTMLVLDEADRMLDLGFEPEIRAIAGATRADR 501

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT++FSAT    +Q ++  F+ NP R+ + +    A       V       K   L + +
Sbjct: 502 QTVMFSATWPMSVQSLASEFMCNPVRVRIGSEGLKASQSITQIVEVVEPQDKDRHLARVM 561

Query: 239 LQS--QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            Q           +     K      H    + +    IHG++ Q  R + +  FK+GT 
Sbjct: 562 KQYLGSPKDCPRTLIFGLYKKECANLHQRLSREWPAVCIHGDMSQADRERSVEAFKKGTS 621

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++A+D+AARGLDI  V +V N+  P   E+Y+HRIGRTGRAG  G A T   + D   
Sbjct: 622 RILIATDVAARGLDIKGVEYVINYTFPLTTEDYVHRIGRTGRAGATGLAHTFFTQHDKAR 681

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
              +  ++ K    +  DL+     ++K +   +    K   +  K+T
Sbjct: 682 AGELVNVLRKAGAEVPEDLTKFGTHVKKKESKLYGAHFKEVDMTVKAT 729


>gi|170727839|ref|YP_001761865.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169813186|gb|ACA87770.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 428

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 148/424 (34%), Positives = 225/424 (53%), Gaps = 11/424 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+   LSP ++ AV   GY + T +Q K IP+ +   D+   A+TGTGKTA+F LP+L
Sbjct: 1   MKFSAFDLSPLILDAVEVCGYQQLTQVQSKVIPVAVTGCDLMACAETGTGKTAAFALPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L          R LIL PTRELA QVADN  +Y +  +L    + GG     Q K L 
Sbjct: 61  QKLLDEFLDRSALRGLILTPTRELAIQVADNISRYSQFTSLKTLAVYGGANMNPQRKALN 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+L+ TPGR+ D   +  L ++++  LVIDEADRMLDMGF+  I+ +  LV     T
Sbjct: 121 AGVDILVATPGRLFDFIGQHGLDLSSVTSLVIDEADRMLDMGFVRDIERVKGLVARQHVT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSAT +D+++ +++  L +P  I V T    +++        Y    ++ A L   L 
Sbjct: 181 HFFSATYSDDVKCLAQKMLCDPTWINVAT----SKSASSVEQEVYLVDKRRKAELLSELV 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  ++F + K++  ++   L+  G      HG+  Q +R + L  FK G ++++V
Sbjct: 237 GRNNWQQVLVFASSKESAEHIQKELKLDGLKSAVFHGDKTQGARNRALEEFKSGALRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N ++P  A++YIHRIGRTGRAG  G A + V   D K ++ I
Sbjct: 297 ATDVAARGLDIHALPLVVNIELPFDAQDYIHRIGRTGRAGLTGHAISFVCPSDEKMLEEI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LIE+K+  +      + P  E+       +       P K    +RRK   + +K   
Sbjct: 357 EALIERKLPRI------VVPGYEQGTALPARYRDSVEVAPNKKR-VERRKGKPAGRKEQT 409

Query: 421 PLKE 424
              +
Sbjct: 410 RRTK 413


>gi|160331247|ref|XP_001712331.1| eif4A [Hemiselmis andersenii]
 gi|159765778|gb|ABW98006.1| eif4A [Hemiselmis andersenii]
          Length = 401

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 122/379 (32%), Positives = 203/379 (53%), Gaps = 6/379 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D+GL  +++  +   G+ KP+ IQ K I  ++ + D+   AQ+GTGKTA+FV+  L 
Sbjct: 23  EFSDMGLKKEILQGIFKYGFEKPSLIQQKGILPIIHKKDLIAQAQSGTGKTATFVIGTLQ 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            ++    +V+    +++ P+RELA Q+   +E  GK   +     IGG   +   +    
Sbjct: 83  NVQYDVFQVQC---MVVCPSRELANQIKIVYESIGKFTKIRTQECIGGTKIKDDRQLLFS 139

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++I TPGR+ D  +  KLL   +E LVIDEAD M   GF   I  I   +P   + 
Sbjct: 140 KKPHIIIGTPGRLFDILSIEKLLSQKLEYLVIDEADEMFSRGFKVQIFRIFKYLPKECKI 199

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT+  E+ +V E F+ +P RI V     T E I+  ++    +  K  AL    + 
Sbjct: 200 GLFSATLPKEILQVIELFISDPVRILVKKEELTLEGIKQFYIPIEKEEWKLEALFD--IY 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  II+ N +K V  L + ++   FS+  IHG ++Q  R + + NF+ G  ++++
Sbjct: 258 RSIKAEQSIIYVNARKKVEWLANKMKLNDFSIAFIHGEMEQSERSETMKNFRFGKFRVLI 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL +RG+DI  V  V N+D+P   E+YIHRIGR+GR G+ G A   +++ D+ ++  I
Sbjct: 318 TTDLLSRGIDIEKVNFVINYDLPQYKESYIHRIGRSGRFGKKGVAINFLSRVDVDNLREI 377

Query: 361 EKLIEKKVDWLNGDLSSLN 379
           E      +  +  D +  +
Sbjct: 378 EAYYSTVIALIPEDFTDFD 396


>gi|73996616|ref|XP_534818.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 1 [Canis familiaris]
          Length = 801

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 121/418 (28%), Positives = 194/418 (46%), Gaps = 22/418 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +++     + P  +IL PTRELA Q+ +   K+GK   +    ++   P    
Sbjct: 452 WITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAIVIATPGRLI 511

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-- 173
           +    R   +  CT   + +      +        +++              ++   +  
Sbjct: 512 DVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLA 571

Query: 174 -----VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
                    RQT++F+ATM   +++++ ++L+ P  + + +     E +E          
Sbjct: 572 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 631

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            +        +  Q      IIF NQKK    L  SLEK G++ C +HG   Q  R   L
Sbjct: 632 KR---KKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFAL 688

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           SN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHRIGRTGRAG+ G A T 
Sbjct: 689 SNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITF 748

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
           + KED      +++ I      L   +SS  P L     AQH          ++ T F
Sbjct: 749 LTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHKPGTILTKKRREETIF 800


>gi|330817466|ref|YP_004361171.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3]
 gi|327369859|gb|AEA61215.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3]
          Length = 524

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 148/406 (36%), Positives = 223/406 (54%), Gaps = 28/406 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 39  SFASLGLSPEIVSALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 98

Query: 62  IL-----------------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
                                    ++    V  P  L+L PTRELA QV      YGK+
Sbjct: 99  RFAQLQKTQAQQPRAPREPQSADRRQRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 158

Query: 99  YNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
                   ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 159 LRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 218

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I+ I +  P +RQT+LFSAT+  ++  ++   L++P+RIE+         I
Sbjct: 219 MLDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTSRLLKDPERIEIVQKMEARTNI 278

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                    +  K    L   L   D +   IIF   K +   L   L   GF   A+HG
Sbjct: 279 AQTVHYVDDRDHKDR--LLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHG 336

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 337 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 396

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381
           RAGR G A +LV   +   +  IE+ +     V+ + G      PP
Sbjct: 397 RAGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRKAPP 442


>gi|300121162|emb|CBK21543.2| unnamed protein product [Blastocystis hominis]
          Length = 627

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 143/455 (31%), Positives = 235/455 (51%), Gaps = 18/455 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L LS  ++ AV + G+  PTPIQ + IPL L   D+C  A+TG+GKTA+++LP+L 
Sbjct: 171 SFNQLRLSRPLLRAVNEMGFTTPTPIQARCIPLALAGKDICAAAKTGSGKTAAYLLPILE 230

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L        + R LI+ PTRELA QV     K  K  ++T  L++GG+P +AQ   L+R
Sbjct: 231 RLLYKNNAQNLIRVLIVAPTRELAQQVHTIATKLTKYTSITCCLVVGGLPLQAQAVDLQR 290

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D+++CTPGR++DH +    +  +++E++++DEADR+L++GF   +  +  L P  RQT
Sbjct: 291 RPDIVVCTPGRMIDHVHNSMSVDLDDVEVVILDEADRLLELGFTEELHELLRLCPVKRQT 350

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATMTD++  +    LQ P R+ V+  +   + +         +       +   + 
Sbjct: 351 LLFSATMTDDVSDLISLSLQKPVRVFVDPVNQVVDRL---VQFIRVKDESLRTAMLLSII 407

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      IIF  +K     L   L   G     +HGN++Q  R++ L  F +  +  ++
Sbjct: 408 TRHFKTETIIFAERKAEAHLLHIILGLLGLKSAELHGNLNQTQRLRALDRFSKKEVDFLI 467

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V N  +P     YIHR+GRT RAG  G+A T V +ED + +  +
Sbjct: 468 ATDVAARGLDIKGVQTVINLHMPKEEATYIHRVGRTARAGHAGRAVTFV-EEDRRLL--M 524

Query: 361 EKLIEKKVDWL---------NGDLSSLNPPLE--KIDIAQHNHARKNNPIPQKSTGFDRR 409
           +KL+++ V+              ++     LE  K +I +     K     +++T    R
Sbjct: 525 KKLVKQAVEAKQQIKTRSVNKESVAKFAAQLEDLKKEIDEILEEEKVEKEIERATMEATR 584

Query: 410 KKNYSSQKSHIPLKESEKISKLQQDIQENDADSLG 444
             N     + I  ++     + +++ +      L 
Sbjct: 585 ADNLIKHGNEIKARKKRTWFQSEKEKKTTRMKDLA 619


>gi|292670294|ref|ZP_06603720.1| ATP-dependent RNA helicase DeaD [Selenomonas noxia ATCC 43541]
 gi|292648025|gb|EFF65997.1| ATP-dependent RNA helicase DeaD [Selenomonas noxia ATCC 43541]
          Length = 425

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 135/418 (32%), Positives = 225/418 (53%), Gaps = 10/418 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LG+S  +   +   G  +PTP+Q + IP +    DV   AQTGTGKT SF+LP+L
Sbjct: 2   MKFDALGVSEVLTALLQRQGITEPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLSFLLPLL 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++    +  + + L++ PTRELA Q+A   E  G+   +   ++ GG   E Q +KL 
Sbjct: 62  EKIKP---QGTVAQALVIAPTRELAIQIARVAEPLGEPLGIGTIVIYGGADIERQKEKLR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++I TPGR+LDH  RG L + ++  +V+DEAD ML MGFI  ++++        Q 
Sbjct: 119 RRPQLVIGTPGRLLDHVRRGTLALGSVNKIVLDEADEMLKMGFIEDVESLLGCAAQDYQL 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + + ++++ F+ NP  I +   ++T  +IE   ++                 
Sbjct: 179 ALFSATMPERIVRLTKKFMTNPAHIRIEGETTTLASIEQIALSVSEGEK---IDRLCASI 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++     ++FC  K+    +   L ++G+ V A+ G++ Q  R  +L  F+E  +Q++ 
Sbjct: 236 NEEAPYLAMVFCATKERTHTVMMELARRGYLVDALSGDLTQTQRAFVLRRFREAKLQILC 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P    +YIHRIGRTGRAG  GKA TLVA    + +  +
Sbjct: 296 ATDIAARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGAQGKAITLVAAHQHEKLRKM 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           E  +++++       ++   P  K    +  +     P   ++ G  +  K+++  + 
Sbjct: 356 EAALKERLRRT----AAKKKPRPKTCTEKPRNGAPRPPRASQTRGRKKFAKSHTHGRK 409


>gi|161784285|sp|Q5BCU6|PRP28_EMENI RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|259486970|tpe|CBF85264.1| TPA: Pre-mRNA-splicing ATP-dependent RNA helicase prp28 (EC
           3.6.1.-) [Source:UniProtKB/Swiss-Prot;Acc:Q5BCU6]
           [Aspergillus nidulans FGSC A4]
          Length = 782

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 126/439 (28%), Positives = 209/439 (47%), Gaps = 37/439 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + GL  +++  V   GY +PTPIQ   IP+ +Q  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 347 SWDESGLPKRLLELVDRVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLC 406

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                    E    +   P  ++L PTRELA Q+    +K+ +     V  ++GG  FE 
Sbjct: 407 YIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEE 466

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 467 QAYSLRNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 526

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA----------- 223
           P T +                       ++  + T +                       
Sbjct: 527 PVTNEKPDTEEAEDSSAMSRHLGSKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGS 586

Query: 224 -------------TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
                          A   K+   L ++L S D     I+F N K+N   +   +++ GF
Sbjct: 587 AGEAVDTVEQRVEMIAGEDKRKKRLGEILSSGDFRPPIIVFVNIKRNCDAIAREIKQWGF 646

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++    E+Y 
Sbjct: 647 SSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVINFNMATSIESYT 706

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ 
Sbjct: 707 HRIGRTGRAGKSGVAITFLGNEDADVMYDLKQML------IKSPISRVPEELRKHEAAQS 760

Query: 391 NHARKNNPIPQKSTGFDRR 409
              R      ++++GF  +
Sbjct: 761 KPTRGAGKKIEEASGFAGK 779


>gi|146300207|ref|YP_001194798.1| DEAD/DEAH box helicase domain-containing protein [Flavobacterium
           johnsoniae UW101]
 gi|146154625|gb|ABQ05479.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae
           UW101]
          Length = 450

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 130/442 (29%), Positives = 212/442 (47%), Gaps = 23/442 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L   +  AV + G+V PTPIQ K+  +++   D+ GIAQTGTGKT +++  +  
Sbjct: 3   TFEKFNLPKSLQKAVDELGFVTPTPIQEKSFSVIMSGRDMMGIAQTGTGKTFAYL--LPL 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +          P+ ++L PTREL  QV +  EK  K  ++    + GG+    Q K +  
Sbjct: 61  LKLYKFTHTNTPKIVVLVPTRELVVQVVEEVEKLTKYMSVKTLGIYGGVNINTQKKAVYE 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+L+ TPGR +D      +  +  + LVIDE D ML++GF P + ++ +++   RQ +
Sbjct: 121 GVDILVGTPGRTMDLALDAVVRFDETQKLVIDEFDEMLNLGFRPQLTSLFAMMKTKRQNI 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMTDE+  +  ++   P+ + +    +  E I           +K   L   L   
Sbjct: 181 LFSATMTDEVDDILNDYFDFPEEVTLAPSGTPLEKITQFTYNVPNFNTKVNLLKHLLETD 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  +   N+K + +      E        IH N  Q  R+  ++ F+EG ++ ++ 
Sbjct: 241 ESMNRILVFVNNKKISDMLFNRIDELFEGQFGVIHSNKSQNYRLSTMAEFQEGNLRGLIT 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI------- 354
           +D+ ARGLDI ++ HV NF++P   E Y+HRIGRTGRA   G A + V   +        
Sbjct: 301 TDVMARGLDISNITHVINFELPEEPELYMHRIGRTGRADATGTAISFVTPREEEFKIETE 360

Query: 355 -------------KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
                        + ++  EKLIE + D L        P LE  D A H  ++KN  I  
Sbjct: 361 LLMDQELKISDFPEEVEISEKLIEAEKDKLPRKFLLKKPKLEG-DGAFHEKSKKNQKINL 419

Query: 402 KSTGFDRRKKNYSSQKSHIPLK 423
                 ++K + S  ++ +  +
Sbjct: 420 GGPSKTKKKTHGSVNRNMLKTR 441


>gi|113969089|ref|YP_732882.1| ATP-dependent RNA helicase DbpA [Shewanella sp. MR-4]
 gi|113883773|gb|ABI37825.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 458

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 142/370 (38%), Positives = 212/370 (57%), Gaps = 7/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L P+++  +   GY + TPIQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 1   MAFSTLKLKPELLENLTTMGYYEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L+  R R++   TL+L PTRELA QVA       +  +    L +  G+P   Q   L
Sbjct: 61  NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH  R +L ++N+ +LV+DEADRML+MGF P +  I    P  RQ
Sbjct: 118 EHGAHIIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +++Q +++  + +P  ++V     T E         +    K      QLL
Sbjct: 178 TLLFSATFPEQIQSIAKQIMYDPVMVKVAV---THEKSTIEQHFYHLDDDKARMQALQLL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 ++ ++FCN K+    +   L   GFSV A+HG+++QR R + L  F   +  ++
Sbjct: 235 LLDRKPESAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  VFN+ V    E +IHRIGRTGRAG  G AFT    +D   I  
Sbjct: 295 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAFTFFNDQDGYKIAL 354

Query: 360 IEKLIEKKVD 369
           +E+ +E+ + 
Sbjct: 355 LEEYLERDIQ 364


>gi|281415806|ref|ZP_06247548.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
          Length = 597

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 134/374 (35%), Positives = 201/374 (53%), Gaps = 10/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD G+ P +V A+   G V P PIQ  T+P+ L  HD+ G A+TGTGKT  F +P L 
Sbjct: 38  TFADFGVHPAIVEALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPALQ 97

Query: 62  ILEKGRARVRM----------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
                                P+ LI+ PTRELA QVA +         L +A + GG  
Sbjct: 98  RAIGPGEPGWDGLEAKGTAGAPQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGRA 157

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q ++L+RG ++++ TPGR++D   +  L ++ +  +V+DEAD MLD+GF+P ++ + 
Sbjct: 158 YEPQIEELQRGVEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETLL 217

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           + VP  RQT+LFSATM   +  ++  ++  P  I    P     T +      Y  +   
Sbjct: 218 AAVPAVRQTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHMD 277

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L       +     IIF   K+    +   L  +GF+  A+HG++ Q +R + L  F
Sbjct: 278 KDELVARALQAEGRGRTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALRAF 337

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++VA+D+AARG+D+ DV HVFNF  P   + Y+HR+GRTGRAG  G A TLV  
Sbjct: 338 RNGKVDILVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLVDW 397

Query: 352 EDIKHIDAIEKLIE 365
           ED+     I+K + 
Sbjct: 398 EDMPRWSLIDKALG 411


>gi|239918016|ref|YP_002957574.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
 gi|239839223|gb|ACS31020.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
          Length = 611

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 134/374 (35%), Positives = 201/374 (53%), Gaps = 10/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD G+ P +V A+   G V P PIQ  T+P+ L  HD+ G A+TGTGKT  F +P L 
Sbjct: 38  TFADFGVHPAIVEALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPALQ 97

Query: 62  ILEKGRARVRM----------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
                                P+ LI+ PTRELA QVA +         L +A + GG  
Sbjct: 98  RAIGPGEPGWDGLEAKGTAGAPQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGRA 157

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q ++L+RG ++++ TPGR++D   +  L ++ +  +V+DEAD MLD+GF+P ++ + 
Sbjct: 158 YEPQIEELQRGVEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETLL 217

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           + VP  RQT+LFSATM   +  ++  ++  P  I    P     T +      Y  +   
Sbjct: 218 AAVPAVRQTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHMD 277

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L       +     IIF   K+    +   L  +GF+  A+HG++ Q +R + L  F
Sbjct: 278 KDELVARALQAEGRGRTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALRAF 337

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++VA+D+AARG+D+ DV HVFNF  P   + Y+HR+GRTGRAG  G A TLV  
Sbjct: 338 RNGKVDILVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLVDW 397

Query: 352 EDIKHIDAIEKLIE 365
           ED+     I+K + 
Sbjct: 398 EDMPRWSLIDKALG 411


>gi|302414752|ref|XP_003005208.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Verticillium
           albo-atrum VaMs.102]
 gi|261356277|gb|EEY18705.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Verticillium
           albo-atrum VaMs.102]
          Length = 1145

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 133/436 (30%), Positives = 209/436 (47%), Gaps = 17/436 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  GL+ + +  + D GY +PT IQ++ +P ++   DV G+A+TG+GKT +F+LPM  
Sbjct: 520 KWAQCGLTRQTLDILADLGYERPTSIQMQALPCLMSGRDVIGVAKTGSGKTMAFLLPMFR 579

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +K       P  LI+ PTRELA Q+  + + + K   +      GG P + Q   L
Sbjct: 580 HIKDQKPIRGDDGPIGLIMTPTRELAVQIHRDCKPFLKPMGMRAVCAYGGAPIKDQIADL 639

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D           +  +  +V+DEADRM DMGF P +  I + +  
Sbjct: 640 KRGAEIVVCTPGRMIDLLGANQGRVTNLRRVSYVVLDEADRMFDMGFEPQVMKIFANMRP 699

Query: 177 TRQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            RQT+LFSATM   +     +      +           E  +   V            L
Sbjct: 700 DRQTILFSATMPRIIDSLTKKVLKSPVEVTVGGRSVVAPEITQKVEVLDEGDKFFHLLGL 759

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L  +D     +IF  +++   +L   L  +G+   +IHG  DQ  R   +S+FK+G 
Sbjct: 760 LGELYEEDEDARSLIFVERQEKADDLLKELMTKGYPCMSIHGGKDQVDRDSTISDFKKGI 819

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T +  E   
Sbjct: 820 VPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNKGTAVTYITSEQEN 879

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST-GFDRRKKNYS 414
               I K +E+          S  P  E+++  +  H  K      K T GF  +  +  
Sbjct: 880 CAPGIAKALEQ----------SGQPVPERLNEMRKAHRDKVKAGKAKDTSGFGGKGLDRL 929

Query: 415 SQKSHIPLKESEKISK 430
             +         K  K
Sbjct: 930 DAEREAARLRERKTHK 945


>gi|157820683|ref|NP_001101516.1| probable ATP-dependent RNA helicase DDX41 [Rattus norvegicus]
 gi|149039854|gb|EDL93970.1| rCG24134 [Rattus norvegicus]
 gi|187469705|gb|AAI66825.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Rattus norvegicus]
          Length = 622

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 129/389 (33%), Positives = 196/389 (50%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L   ++  +   G + PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 182 SFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 361

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 362 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKE 417

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 538 KACDESVLMDLKALLLEAKQKVPPVLQVL 566


>gi|56119116|ref|NP_001007820.1| probable ATP-dependent RNA helicase DDX4 [Bos taurus]
 gi|75071078|sp|Q5W5U4|DDX4_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4
 gi|33332326|gb|AAQ11373.1| DEAD/H box polypeptide 4 [Bos taurus]
          Length = 729

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 130/429 (30%), Positives = 215/429 (50%), Gaps = 21/429 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 290 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPIL 349

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             + +          ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 350 AHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGH 409

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  ++ LV+DEADRMLDMGF P ++      
Sbjct: 410 SIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCP 469

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       +    QYSK
Sbjct: 470 GMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSK 529

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 530 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 587

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 588 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 647

Query: 351 -KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            + D +    +       V  L+     +   LE+I  + +      N         D R
Sbjct: 648 LESDSQLAQPL-------VKVLSDAQQDVPAWLEEIAFSTYGPGFSGNARGNVFASVDTR 700

Query: 410 KKNYSSQKS 418
            KNY  + S
Sbjct: 701 -KNYPGKSS 708


>gi|113970779|ref|YP_734572.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113885463|gb|ABI39515.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 449

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 186/370 (50%), Gaps = 1/370 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F D  L  +++ ++   G   PT IQ + +P+ L   D+   ++TG+GKT +F+LP +
Sbjct: 1   MQFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++       R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRVISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +    ++ TPGRI DH  +  L +N +E+LV+DEADRMLD+GF P ++ I +     R+
Sbjct: 121 AKEPHFIVATPGRIADHLEQKNLFLNGLELLVLDEADRMLDLGFAPQLKAINAAADHKRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  +              V   ++  E  +         +      L   L
Sbjct: 181 QTLMFSATLDHSEINEIAAALLKNPSHVAIGAAHTEHQDITQRIYLCDHLDHKEALLTRL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S +T K  IIF   + +   L   L  QGF+  A+ G + Q +R +I+  F  G  Q++
Sbjct: 241 LSDETHKQVIIFTATRADTERLASKLSAQGFATAALSGELKQAARNQIMDQFARGQQQIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D  +   
Sbjct: 301 VTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNFKK 360

Query: 360 IEKLIEKKVD 369
           ++  + K  +
Sbjct: 361 VQLFLRKTFE 370


>gi|328717963|ref|XP_001951743.2| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Acyrthosiphon pisum]
          Length = 556

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 124/380 (32%), Positives = 204/380 (53%), Gaps = 3/380 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
            F + G    ++  +   G+V+PT IQ +  P+ L  +++ GIA TG+GKT S+++P  +
Sbjct: 102 KFDESGFPEIIIKELKKQGFVEPTAIQAQGWPIALSGNNLVGIASTGSGKTLSYIVPALI 161

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               ++  +R   P  L+L PTRELA Q+    + +G  + ++   L GG P   Q   L
Sbjct: 162 HISHQRKLSRGDGPIVLVLSPTRELAQQIQTVCDDFGDAFGVSSTCLFGGAPKGGQASDL 221

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +++I TPGR+LD     +  M     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 222 SRGVELVIATPGRLLDFLESERTNMCRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQ 281

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQL 238
            L++SAT   E++ ++E FL    +I + + +  A       V    +Y K+   +    
Sbjct: 282 VLMWSATWPKEVKNLAEEFLDEYIQINIGSLTLAANHNIQQIVEVCQEYDKETKLISLLK 341

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               +     I+F   K+ V  +   +++ G+S   IHG+  Q  R  +L +F++    +
Sbjct: 342 KIMDEDENKTIVFIETKRRVDEITRKIKRHGYSAVCIHGDKSQYERDNVLKDFRDSRYPI 401

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ DV  V NFD PN +E+Y+HRIGRTGR+ + G A+T   + + K   
Sbjct: 402 LVATDVAARGLDVEDVKFVINFDYPNNSEDYVHRIGRTGRSHKTGTAYTFFTQSNAKQAA 461

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    ++  L  +
Sbjct: 462 DLVSVLTEANQTISPKLKDI 481


>gi|326473030|gb|EGD97039.1| ATP-dependent RNA helicase DBP4 [Trichophyton tonsurans CBS 112818]
          Length = 703

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 123/455 (27%), Positives = 198/455 (43%), Gaps = 26/455 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F DL LS      +  + + + T IQ + IP  LQ  D+ G A+TG+GKT +F++P + 
Sbjct: 51  SFTDLPLSEPTRLGLSASHFKELTDIQSRAIPHALQGRDILGAAKTGSGKTLAFLVPVLE 110

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  K          LI+ PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L 
Sbjct: 111 NLFRKQWTEYDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLQEEQERLG 170

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +           +NI++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 171 RMNILVCTPGRMLQHMDQTAAFDTDNIQMLVLDEADRIMDMGFQNTVDAIVEHLPKERQT 230

Query: 181 LLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT T ++      +             SS   +             K   L   + 
Sbjct: 231 MLFSATQTKKVSDLARLSLQDPEYISVHQAASSATPSTLQQHYVVTPLPDKLDTLWSFIR 290

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S  +        +++   V       + G  +  +HG   Q +R+ I   F       +
Sbjct: 291 SSLKSKVIVFFSSSKEVRFVYEAFRQMQPGIPLLHLHGRQKQGARLDITHKFSASKNSCL 350

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKHID 358
            A+D+ ARGLD P V  V   D P  ++ YIHR+GRT R  R G+A   +   E+I  + 
Sbjct: 351 FATDVVARGLDFPAVDWVIQLDCPEDSDTYIHRVGRTARYERDGRAVLFLDPSEEIGMLS 410

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +E   +KK+            P+EKI+I  +      + +  ++  F   +  Y  QK+
Sbjct: 411 RLE---QKKI------------PIEKINIRANKQQSIKHQL--QNMCFKDPQLKYLGQKA 453

Query: 419 HIPLKESEKISKLQQDIQ------ENDADSLGFRG 447
                +S  I K ++         E  A SLG  G
Sbjct: 454 FTSYVKSIHIQKDKEVFDVKALPLEEYAASLGLPG 488


>gi|256822194|ref|YP_003146157.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256795733|gb|ACV26389.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 458

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 128/378 (33%), Positives = 207/378 (54%), Gaps = 10/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   +  A     +  P+ +Q K I  +L  HDV   A+TG+GKTA+F+LP++  
Sbjct: 7   FQE--LHSGLQKAFQKLKFEVPSEVQEKAIEPILDGHDVMVSAETGSGKTAAFLLPIIHN 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +  +R    R LIL PTRELA Q+  +     +   +   L+IGG  ++ Q       
Sbjct: 65  LLENPSRHTSTRVLILAPTRELARQIDKHARDLTQFTQIKTGLIIGGADYKYQQAIFRDN 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +++I TPGR+L+H  +    +N++E LVIDEAD+M +MGF   +Q I       RQTLL
Sbjct: 125 PEIIIATPGRMLEHCEKQGADLNDLEYLVIDEADKMFEMGFTDDVQAIAGFCKSDRQTLL 184

Query: 183 FSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT  T  ++ +++  +  P+ I +N+  +  ++IE   +       K+     Q L +
Sbjct: 185 FSATLKTKGIKHLTDYLMDEPQAIVLNSFEAKNDSIEQFIITADDLVHKEKLT--QWLLT 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  I+FCN K+ V  L   +     +   +HG+I Q  R  +++ F++  I++++A
Sbjct: 243 NEEYRKAIVFCNTKEQVDRLGGLIRYHKIAAGTLHGDISQSVRNHVMTQFRDSKIKVLIA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARG+D+ D+  V NFD+ + AE+YIHRIGRT RAG  GKA +L++  +   +  IE
Sbjct: 303 SDVAARGIDVKDIDLVINFDMAHNAEDYIHRIGRTARAGETGKAVSLISHREWNLMVTIE 362

Query: 362 KLIE-----KKVDWLNGD 374
           K I        +  L  +
Sbjct: 363 KAISGSFQLTSIKELPAN 380


>gi|313205812|ref|YP_004044989.1| dead/deah box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|312445128|gb|ADQ81483.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|315022792|gb|EFT35816.1| Cold-shock DEAD-box protein A [Riemerella anatipestifer RA-YM]
          Length = 554

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 126/380 (33%), Positives = 217/380 (57%), Gaps = 11/380 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLP 58
           M+ F++  LSP+++ AV + G+  PT IQ ++IP +L    D+  +AQTGTGKTA+F LP
Sbjct: 1   MNLFSESNLSPEILKAVGEMGFETPTEIQKQSIPFILSDVRDLIALAQTGTGKTAAFSLP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNK 117
           +L +++    ++++   L+L PTREL  Q+A + + Y K      ++ + G      Q +
Sbjct: 61  ILDMIDDTSRKIQL---LVLCPTRELCLQIAKDIKNYSKYQPNIKSVAVYGGSSITDQIR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L     +++ TPGR++D  NR  L  ++I  LV+DEAD ML MGF   ++ I S  P T
Sbjct: 118 SLRDKPQIIVGTPGRVIDLINRKALDFSSIHWLVLDEADEMLSMGFKDDLETILSETPET 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTLLFSATM  E++++S+++L NP RI V + ++  + I H +     +  K+      
Sbjct: 178 KQTLLFSATMNKEVERISKSYLTNPHRISVGSINAVKKNISHEYYVVNYRQKKEALKRLI 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      IIFC  +     +   L + G++  A+HG++ Q  R  ++  F+   I 
Sbjct: 238 DANPNQY---SIIFCRTRMEAKEVADYLMQNGYAADALHGDLSQAQRDTVMLKFRLKNID 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  + HV ++ +P+  E ++HR GRTGRAG+ G +  L+  E+ + +
Sbjct: 295 ILVATDVAARGLDVDSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEETRKL 354

Query: 358 DAIEKLIEKKVDWLNGDLSS 377
             I+  ++ +++     +  
Sbjct: 355 KHIK--VQTQIELKEKPIPK 372


>gi|307191878|gb|EFN75297.1| Probable ATP-dependent RNA helicase DDX5 [Harpegnathos saltator]
          Length = 465

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 123/401 (30%), Positives = 192/401 (47%), Gaps = 25/401 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + G    V+  +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP +  
Sbjct: 49  FEEGGFPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 108

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  LIL PTRELA Q+      +G +  +    + GG P   Q + LE
Sbjct: 109 INHQPRLSRNDGPIALILAPTRELAQQIQQVASDFGMSSQVRNTCIFGGAPKGPQARDLE 168

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 169 RGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQT 228

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK-CALLQQLL 239
           L++SAT   E++ ++E FL +  +I + +    A       V    +Y K+   +     
Sbjct: 229 LMWSATWPKEVRNLAEEFLTDYIQINIGSLQLAANHNILQIVDVCEEYEKEGKLMKLLEE 288

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S +     IIF   K+ V ++  ++ + G+    IHG+  Q+                 
Sbjct: 289 ISNEPENKTIIFVETKRKVDDITRAINRYGWQAIGIHGDKSQQ----------------- 331

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
              +       + DV  V N D P+ +E+Y+HRIGRTGR+ R G A+      +      
Sbjct: 332 ---ERDYVLNHVEDVKFVINLDYPSNSEDYVHRIGRTGRSQRTGTAYAFFTPGNAHKASD 388

Query: 360 IEKLIEKKVDWLNGDLSSL--NPPLEKIDIAQHNHARKNNP 398
           + +++E+    +N  L  L  NP + K  I    +  K+ P
Sbjct: 389 LIQVLEEAKQVVNPKLYELSRNPGIYKSGITGGGYGAKSFP 429


>gi|145491907|ref|XP_001431952.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399059|emb|CAK64554.1| unnamed protein product [Paramecium tetraurelia]
          Length = 408

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 112/377 (29%), Positives = 191/377 (50%), Gaps = 8/377 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +  L  +++  +  + Y KP+PIQ ++IP  L   ++   A+ GTGKT ++++P+L
Sbjct: 37  VEFEEFDLKQELMQGLAASNYEKPSPIQEESIPFALAGSNIIARAKNGTGKTGAYIIPIL 96

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +LE         ++LIL PTRELA QV+   ++ GK   +   +  GG  F+    +L+
Sbjct: 97  EMLEVEGQ----IQSLILVPTRELALQVSSLVKEIGKYMKVECMVSTGGTDFKEDIYRLK 152

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   VL+ TPGRILD   R    ++ ++  V+DEAD++L + F P I  I    P   Q 
Sbjct: 153 QVVHVLVGTPGRILDLAQRKLADLSKLKHFVLDEADKLLSVDFQPLIVKILQFAPPEVQI 212

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT   +++     F+                T++           K+       + 
Sbjct: 213 MMFSATFPVDVKG----FINEHVPQIQEINLMEELTLKGVTQYYLFIDEKQKVNCLNFIF 268

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  ++Q+ R K+  +F++   + +V
Sbjct: 269 SKLEINQAIIFCNSARRVELLTQKITEFGYSCFYIHAKMNQKDRNKVFHSFRKAVGRCLV 328

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A   + + D   +  I
Sbjct: 329 STDLFTRGIDIQSVNVVINFDFPRTAETYLHRIGRSGRFGHLGLAVNFITETDKDTLVQI 388

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ ++  +     ++  
Sbjct: 389 EQELDTDIKPFPKEVDK 405


>gi|109130176|ref|XP_001087519.1| PREDICTED: probable ATP-dependent RNA helicase DDX53-like [Macaca
           mulatta]
          Length = 592

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 128/403 (31%), Positives = 216/403 (53%), Gaps = 6/403 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI---LEKG 66
           P ++ ++   G+VKPTPIQ +  P++LQ  D+  +AQTGTGKT S+++P           
Sbjct: 191 PDLLKSITRVGFVKPTPIQSQAWPIILQGIDLIEVAQTGTGKTLSYLMPGFIHVDSQPLS 250

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTRELA QV     KY      ++ +  G      Q + + +  D++
Sbjct: 251 REQRNGPGMLVLTPTRELALQVEAECSKYSYKDLKSICICGGRNRIG-QIEDISKDVDII 309

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + +I  LV+DEAD+MLDM F P I  I   V   RQT++ SAT
Sbjct: 310 IATPGRLNDLQMNNSVNLRSITYLVMDEADKMLDMEFEPQIMKILLDVHPDRQTVMISAT 369

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             D +++++ ++L++P  + V   +  A       +    +  K+    Q+ +++     
Sbjct: 370 WPDTVRRLARSYLKDPMIVYVGNLNLAAVNTVKQNIIVTTEEEKRALT-QEFIENMSPND 428

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+F +QK+   +L      QG SV ++HGN ++  + + L +F+ G I++++ +DL A
Sbjct: 429 KVIMFVSQKRIADDLSSDFNIQGISVESLHGNSEESDKERALQDFESGNIKILITTDLVA 488

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLD+ DV HV+N+D P   E Y+HR+GR GRAG+ G + TL+ + D K    + K++E+
Sbjct: 489 RGLDVNDVTHVYNYDFPWNIEEYVHRVGRIGRAGKTGTSVTLITQRDAKMAGELIKILER 548

Query: 367 KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
               +  DL  +     K++  + +   ++    Q+   F  R
Sbjct: 549 ANQSVPEDLVVIAEQY-KLNQQKRDTETRSRKPGQRHKEFHYR 590


>gi|220917833|ref|YP_002493137.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219955687|gb|ACL66071.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 652

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 133/391 (34%), Positives = 213/391 (54%), Gaps = 10/391 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+GLS  V  AV + GY KPTP+Q  T   +    DV   ++TGTGKTA+F +P+L 
Sbjct: 21  SFDDMGLSEPVRRAVAEHGYTKPTPVQSATFRPIRDGKDVIVRSKTGTGKTAAFSIPILE 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  GR +   P  L++ PTRELA QVA+      K+ +L V  + GG     Q  KL+ 
Sbjct: 81  RIPDGRRK---PSALVMCPTRELAIQVAEEVTALAKHRDLGVVTIYGGASMGDQLDKLKA 137

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA++++ TPGRI DH  R  L +  + +  +DEAD ML+MGF   +  I   +P   Q L
Sbjct: 138 GAEIVVGTPGRIYDHIRRKTLRLEEVMVCCLDEADEMLNMGFFEEVTRILDHLPADVQQL 197

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  +++++  ++L +P+ I ++      E I +    T   Y K        +  
Sbjct: 198 LFSATVPADIEQIIHDYLTDPETILLSGDEYKVENINNVMYPTVDAYPKPR--NLLYMIG 255

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  IIFCN + +   +   L + G+    ++G++ Q+ R ++++  K G ++ MVA
Sbjct: 256 MEEPEAAIIFCNTRSDTSLVTAVLNRNGYDAELLNGDLPQKERERVMAKVKRGEVRFMVA 315

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI D+ HV N+ +P     ++HR+GRTGR G+ G + +LV+  D+  + A++
Sbjct: 316 TDIAARGIDISDLSHVINYSLPEDPAVFLHRVGRTGRIGKKGTSLSLVSGGDLHTLTALQ 375

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           K  E   +       +L  P E   I    H
Sbjct: 376 KKYEIVFEK-----KALPTPEEARKIWTDRH 401


>gi|197123043|ref|YP_002134994.1| DEAD/DEAH box helicase [Anaeromyxobacter sp. K]
 gi|196172892|gb|ACG73865.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp. K]
          Length = 651

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 133/391 (34%), Positives = 213/391 (54%), Gaps = 10/391 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+GLS  V  AV + GY KPTP+Q  T   +    DV   ++TGTGKTA+F +P+L 
Sbjct: 21  SFDDMGLSEPVRRAVAEHGYTKPTPVQSATFRPIRDGKDVIVRSKTGTGKTAAFSIPILE 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  GR +   P  L++ PTRELA QVA+      K+ +L V  + GG     Q  KL+ 
Sbjct: 81  RIPDGRRK---PSALVMCPTRELAIQVAEEVTALAKHRDLGVVTIYGGASMGDQLDKLKA 137

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA++++ TPGRI DH  R  L +  + +  +DEAD ML+MGF   +  I   +P   Q L
Sbjct: 138 GAEIVVGTPGRIYDHIRRKTLRLEEVMVCCLDEADEMLNMGFFEEVTRILDHLPADVQQL 197

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  +++++  ++L +P+ I ++      E I +    T   Y K        +  
Sbjct: 198 LFSATVPADIEQIIHDYLTDPETILLSGDEYKVENINNVMYPTVDAYPKPR--NLLYMIG 255

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  IIFCN + +   +   L + G+    ++G++ Q+ R ++++  K G ++ MVA
Sbjct: 256 MEEPEAAIIFCNTRSDTSLVTAVLNRNGYDAELLNGDLPQKERERVMAKVKRGEVRFMVA 315

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI D+ HV N+ +P     ++HR+GRTGR G+ G + +LV+  D+  + A++
Sbjct: 316 TDIAARGIDISDLSHVINYSLPEDPAVFLHRVGRTGRIGKKGTSLSLVSGGDLHTLTALQ 375

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           K  E   +       +L  P E   I    H
Sbjct: 376 KKYEIVFEK-----KALPTPEEARKIWTDRH 401


>gi|169773163|ref|XP_001821050.1| ATP-dependent RNA helicase dbp4 [Aspergillus oryzae RIB40]
 gi|238491114|ref|XP_002376794.1| DEAD box  RNA helicase (Hca4), putative [Aspergillus flavus
           NRRL3357]
 gi|91206545|sp|Q2UHB7|DBP4_ASPOR RecName: Full=ATP-dependent RNA helicase dbp4
 gi|83768911|dbj|BAE59048.1| unnamed protein product [Aspergillus oryzae]
 gi|220697207|gb|EED53548.1| DEAD box RNA helicase (Hca4), putative [Aspergillus flavus
           NRRL3357]
          Length = 796

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 128/455 (28%), Positives = 219/455 (48%), Gaps = 26/455 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL LS      +  + +   T IQ + I   L+  D+ G A+TG+GKT +F++P+L 
Sbjct: 46  SFSDLPLSEPTASGLASSHFKTLTDIQSRAIGHALKGRDILGAAKTGSGKTLAFLIPVLE 105

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L + +         LIL PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L 
Sbjct: 106 NLYRKQWSEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLIIGGKSLKEEQERLG 165

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +          + N+++LV+DEADR+LDMGF   +  I   +P  RQT
Sbjct: 166 RMNILVCTPGRMLQHLDQTAMFDVFNLQMLVLDEADRILDMGFQKTVDAIVGHLPKERQT 225

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT T ++  ++   LQ+P+ + V+  +S+A              S+K   +     
Sbjct: 226 LLFSATQTKKVSDLARLSLQDPEYVAVHETASSATPSTLQQHYVVTPLSQKL-DVLWSFI 284

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQL 298
             +     I+F +  K V  +  S       +    +HG   Q  R+ I + F +    +
Sbjct: 285 RSNLKAKTIVFLSSGKQVRFVYESFRHLQPGIPLMHLHGRQKQGGRLDITAKFSQAKHAV 344

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + ++D+ ARGLD P V  V   D P  A+ YIHR+GRT R  R G+A   +   +   + 
Sbjct: 345 LFSTDITARGLDFPAVDWVIQMDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEESGM- 403

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +++L +KKV            P+E+I+I  +      + +  ++  F   +  Y  QK+
Sbjct: 404 -LKRLEQKKV------------PIERINIKANKQQSIRDQL--QNMCFKDPELKYLGQKA 448

Query: 419 HIP------LKESEKISKLQQDIQENDADSLGFRG 447
            I       +++ +++ KL++   E+ A SLG  G
Sbjct: 449 FISYVKSVYVQKDKEVFKLKELKLEDFASSLGLPG 483


>gi|116207046|ref|XP_001229332.1| hypothetical protein CHGG_02816 [Chaetomium globosum CBS 148.51]
 gi|118597490|sp|Q2HAD8|PRP5_CHAGB RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|88183413|gb|EAQ90881.1| hypothetical protein CHGG_02816 [Chaetomium globosum CBS 148.51]
          Length = 1064

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 127/442 (28%), Positives = 214/442 (48%), Gaps = 12/442 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            ++  GL+  ++  V   GY KPT IQ++ +P+++   DV G+A+TG+GKT +FVLPM  
Sbjct: 430 KWSQCGLTRPILDVVEGLGYEKPTSIQMQALPVIMSGRDVIGVAKTGSGKTMAFVLPMLR 489

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +           LI+ PTREL  Q+  +   + K   L      GG   + Q  +L
Sbjct: 490 HIKDQDPVTGDDGAIALIMTPTRELCTQIYSDLLPFAKALKLRAIAAYGGNAIKDQIAEL 549

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++ TPGR++D     +     +     LV+DEADRM DMGF P +  I + V  
Sbjct: 550 KRGAEIIVATPGRMIDLLAANSGRVTNLKRATYLVLDEADRMFDMGFEPQVMKIFNNVRP 609

Query: 177 TRQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            RQT+LFSATM   +     +   +  +           E  +   +    +   +   L
Sbjct: 610 DRQTILFSATMPRIIDALTKKVLREPVEIQVGGRSVVAPEITQIVEILDEGKKFVRLLEL 669

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L + D     +IF  +++   +L   + ++G+   +IHG  DQ  R   +S+FK+G 
Sbjct: 670 LGELYADDDDVRALIFVERQEKADDLLREVLRRGYGCMSIHGGKDQEDRNSTISDFKKGV 729

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +M+A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + +E   
Sbjct: 730 CPIMIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQEN 789

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
               I K +E+    +   L+ +    ++    +    +  +       G +R  K   +
Sbjct: 790 CAPGIAKALEQSGQPVPEQLNEMRKAWKE----KVKTGKAKDASGFGGKGLERLDKEREA 845

Query: 416 QKSHIPLKESEKISKLQQDIQE 437
             + +  +++ K    + D +E
Sbjct: 846 --ARVRERKTHKAEGEEDDFKE 865


>gi|319778451|ref|YP_004129364.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
 gi|317108475|gb|ADU91221.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
          Length = 442

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 147/382 (38%), Positives = 216/382 (56%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D G   K++  +   GY   TPIQ  +   +L+  D+ G AQTGTGKTA+F LP+L 
Sbjct: 5   NFKDFGFHSKILENISKTGYEYATPIQALSFEPILEGRDIMGAAQTGTGKTAAFTLPILN 64

Query: 62  ILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L         P        +L PTRELA Q++ N   Y     L  +L+ GG+   +Q 
Sbjct: 65  RLIPKANYSTSPAKHPVRMLVLTPTRELAEQISKNVNLYSDGLPLKCSLIYGGVDINSQK 124

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++L RGAD++I TPGR+LDH  +  + +  +E LV+DEADRMLDMGF+P +  I S +P 
Sbjct: 125 QELMRGADIVIATPGRLLDHIEQRTVNLTQVEFLVLDEADRMLDMGFMPDLLRILSNLPK 184

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           +RQ+LL+SAT ++ ++ +++ FL NP  I V + +STA TI+    +             
Sbjct: 185 SRQSLLYSATFSENIRSLAQKFLNNPVEITVASNNSTASTIKQEVYSVSESDKNAA---L 241

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             + +     N IIF N+K    NL   L     +V ++HG+  Q  R K L  FK    
Sbjct: 242 VYILTSRAFNNVIIFSNRKVTCKNLERLLNNYDLAVQSLHGDKSQLERTKALDLFKSSKC 301

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLDI DV  V N+++P  +E+Y+HRIGRTGRAG+ G A +L + E+ K 
Sbjct: 302 NILVATDVAARGLDISDVDAVINYELPPTSEDYVHRIGRTGRAGKKGIAISLCSSEEGKS 361

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
           +  IE L   K   L+  +  +
Sbjct: 362 LSEIETLTGLKFQKLSLSIPDV 383


>gi|112983588|ref|NP_001037347.1| vasa-like [Bombyx mori]
 gi|1944405|dbj|BAA19572.1| BmVLG [Bombyx mori]
          Length = 601

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 129/376 (34%), Positives = 202/376 (53%), Gaps = 14/376 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L   V+  VL AGY KPTPIQ   IP+++   D+ G AQTG+GKTA+F++P++ 
Sbjct: 181 SFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIIN 240

Query: 62  ILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +L +             P+ +I+ PTREL  Q+ +   K+     L VA+  GG     Q
Sbjct: 241 MLLQDPKDLISENGCAQPQVIIVSPTRELTLQIFNEARKFSYGSVLKVAVAYGGTAVRHQ 300

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              + RG  +L+ TPGR+ D   R ++   ++  +V+DEADRMLDMGF+P I+ +     
Sbjct: 301 GDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSIEKMMLHPT 360

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTL+FSAT  +++Q ++  FL N   + V      +  +E  F+       + 
Sbjct: 361 MVETTKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRN 420

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                + L  ++  K  ++F   K+N   +   L +Q     +IHG+  QR R + L NF
Sbjct: 421 S---LKQLIEENDGKRILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNF 477

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-A 350
           K G   ++VA+ +AARGLDI +V  V N+D+P   + Y+HRIGRTGR G  GKA +   +
Sbjct: 478 KSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFYDS 537

Query: 351 KEDIKHIDAIEKLIEK 366
            +D+  +  + K++ +
Sbjct: 538 DQDLALVADLSKILRQ 553


>gi|238836384|gb|ACR61400.1| vasa [Ctenopharyngodon idella]
          Length = 670

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 143/421 (33%), Positives = 219/421 (52%), Gaps = 21/421 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 233 MTFDEAKLCESLSKNVTKSGYVKPTPVQKYGIPIISAGRDLMACAQTGSGKTAAFLLPIL 292

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                        + V+ P  +I+ PTREL  Q+     K+     +   ++ GGI    
Sbjct: 293 QRFMTDGVAASKFSEVQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGY 352

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
             +++ +G +VL  TPGR+LD   RGK+ ++ +  L++DEADRMLDMGF P ++      
Sbjct: 353 TIREVLKGCNVLCGTPGRLLDIIGRGKVGLSKLRYLILDEADRMLDMGFEPDMRKLVGSP 412

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL+             A +     +    QYSK
Sbjct: 413 GMPAKEDRQTLMFSATFPEEIQRLAAEFLKVDYLFLAVGVVGGACSDVEQTIIQVDQYSK 472

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  LL+ L  +    +  ++F   K++   +   L ++  S  +IHG+ +QR R K LS+
Sbjct: 473 REQLLELLKTTGT--ERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSD 530

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI  V HV NFD+PN  + Y+HRIGRTGR G  G+A +   
Sbjct: 531 FRTGQCPVLVATSVAARGLDIEHVQHVVNFDLPNNIDEYVHRIGRTGRCGNIGRAVSFFN 590

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            E D     ++       V  L+G   ++   LE+I  + H      NP  +     D R
Sbjct: 591 PESDTPLARSL-------VKVLSGAQQTVPKWLEEIAFSAHGTT-GINPRGRLFASTDTR 642

Query: 410 K 410
           K
Sbjct: 643 K 643


>gi|255081552|ref|XP_002507998.1| predicted protein [Micromonas sp. RCC299]
 gi|226523274|gb|ACO69256.1| predicted protein [Micromonas sp. RCC299]
          Length = 481

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 117/374 (31%), Positives = 197/374 (52%), Gaps = 9/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L  K++  +    + KPTPIQ + IP++    DV G A+TG+GKTA+F +PM+ 
Sbjct: 49  SFEDMNLDTKIMMDIKYKEFDKPTPIQAQAIPVICSGRDVLGCAETGSGKTAAFSIPMIQ 108

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
               +    R   P  +++ PTRELA Q+    + + ++       +++GG     Q   
Sbjct: 109 HCLQQPEIKRGDGPFAIVMAPTRELAQQIEKEAKIFSRSSKGFKTTIVVGGTNMSEQRMD 168

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G +V + TPGR++DH ++G   +  + ++++DEADRMLDMGF P I+ +   +P   
Sbjct: 169 LKNGVEVCVATPGRLIDHLHQGNTNLARVSLVILDEADRMLDMGFEPQIREVMMNLPKPH 228

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC------FVATYAQYSKKC 232
           QTLLFSATM  E++ ++ ++L  P +++V   S     +                     
Sbjct: 229 QTLLFSATMPVEVEALAADYLNKPVKVKVGAVSVPTSNVAQHLEKLVDSQKVDRLCELLL 288

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
               +  +    +   ++F  +K     +   L  +G +  A HG   Q+ R   L++F 
Sbjct: 289 EEKAEAEKFGGQLPMTVVFVERKARADEIMTLLNAEGVAAAAFHGGRSQQEREAALADFT 348

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+D+AARGLD+  V HV N D+P   E+Y+HR+GRTGRAG  G+A +     
Sbjct: 349 TGRCAVLVATDVAARGLDVKGVQHVVNLDLPRMFEDYVHRVGRTGRAGMTGRATSFYTDR 408

Query: 353 DIKHIDAIEKLIEK 366
           D   +  I++ +++
Sbjct: 409 DSFLVAQIKRALQE 422


>gi|225011120|ref|ZP_03701583.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-3C]
 gi|225004754|gb|EEG42713.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-3C]
          Length = 455

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 145/443 (32%), Positives = 223/443 (50%), Gaps = 8/443 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  L+  +   + + GY  PTPIQ  T   VL   DV G+AQTGTGKT +++LP+L 
Sbjct: 8   SFEEFNLNTPLKNNLSEVGYEVPTPIQGATYASVLSGQDVLGLAQTGTGKTLAYLLPILN 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+  + +    R L++ PTREL +QV +  EK  +N  + V  + GG   +     L +
Sbjct: 68  DLKFAKEKT--VRALVIVPTRELVSQVVEEAEKICQNTFIRVCGVHGGNSMKKDRDALAQ 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            AD+++ TPGR+ D F    +    I+ +VIDE D MLD+GF   + NI  L+P  RQ +
Sbjct: 126 SADIIVATPGRLYDLFLARVIKYAAIKKVVIDEVDVMLDLGFRFQLTNIFDLLPKKRQHI 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATMTDE++ +  +F   PKRI +    +  + I     A    Y+K   L   L Q 
Sbjct: 186 MFSATMTDEIESLISDFFIAPKRIYIAMSGTPLKNIAQTAYAVPNYYTKVNLLQHLLEQE 245

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   K  +   N+K               ++  +H N  Q  R ++LS F  G I++++A
Sbjct: 246 ETFKKVLVFVSNKKIADRIYEQLEPVFEKNIGIVHANKTQNHRNRVLSAFDAGRIRIVIA 305

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARGLDI  + HV NFD P   ENY+HRIGRTGRA   G +  L   E++ + +AIE
Sbjct: 306 TDLVARGLDIDQISHVINFDTPKYPENYMHRIGRTGRANADGNSILLHNPEELAYKEAIE 365

Query: 362 KLIEKKVDWL----NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            L++  V  +       +S    P E+    + +  +     P   +GF  + +    + 
Sbjct: 366 TLMQIAVPDIEFPKEVPVSIQLAPEEQPHTFEPDSDKLQGRDPSLGSGFHEKSEKNKQEN 425

Query: 418 SHIPLKE--SEKISKLQQDIQEN 438
                K   ++K  K +    +N
Sbjct: 426 QGGSYKRIIAKKYKKPKTRGDKN 448


>gi|302416461|ref|XP_003006062.1| ATP-dependent RNA helicase HAS1 [Verticillium albo-atrum VaMs.102]
 gi|261355478|gb|EEY17906.1| ATP-dependent RNA helicase HAS1 [Verticillium albo-atrum VaMs.102]
          Length = 587

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 122/406 (30%), Positives = 211/406 (51%), Gaps = 5/406 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ L LS K + A+   G+ K T IQ + IP +L   DV G A+TG+GKT +F++P + 
Sbjct: 111 DFSQLNLSEKTMKAIEGMGFTKMTEIQRRGIPPLLTGRDVLGAAKTGSGKTLAFLIPAIE 170

Query: 62  ILEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + R    +I+  PTRELA Q+     +  ++++ T  ++IGG    A+ +KL 
Sbjct: 171 MLSSLRFKPRNGTGVIVVSPTRELALQIFGVARELMEHHSQTYGIVIGGANRRAEAEKLA 230

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-VPFTRQ 179
           +G +++I TPGR+LDH      +  N++ L+IDEADR+L++GF   ++ I  +     RQ
Sbjct: 231 KGVNLIIATPGRLLDHLQNTPFVFKNLKTLIIDEADRILEIGFEDEMRQIVKILPSADRQ 290

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT T +++ ++   L+          +    T+E            K  LL    
Sbjct: 291 TSLFSATQTTKVEDLARISLRAGPLYINVDQTKEHSTVEGLEQGYVICDEDKRFLLLFSF 350

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  I+F +   +V      L      V ++HG + Q++R      F       +
Sbjct: 351 LKRNLKKKVIVFFSSCNSVKYHAELLNYIDLPVLSLHGKMKQQARTNTFFEFCNAKQGTL 410

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+AARGLDIP V    +FD P+   +YIHR+GRT RA   GK+   +   ++  +  
Sbjct: 411 ICTDVAARGLDIPSVDWSVSFDPPDAPTDYIHRVGRTARANAKGKSLLFLHPSEVGFLSH 470

Query: 360 IE--KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           ++  ++   + ++    ++++   LEK+ I+Q+ +  K+     +S
Sbjct: 471 LKAARVPVVEFEFPASKVANIQALLEKL-ISQNYYLNKSAKDGYRS 515


>gi|256074311|ref|XP_002573469.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238658649|emb|CAZ29701.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 879

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 206/379 (54%), Gaps = 4/379 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++ G    ++  +  + +  PTPIQ +  P+ L   D+ GIAQTG+GKTASF+LP + 
Sbjct: 78  KFSEAGFPSYIMSVIKKSKWDSPTPIQCQGWPVALSGRDLVGIAQTGSGKTASFLLPAIV 137

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +      R   P  LIL PTRELA QV    E +  +     A L GG     Q + L
Sbjct: 138 HAKAQPSLKRGDGPIVLILVPTRELAQQVEKVAEDFCYSAGFKSACLYGGASRTGQAEAL 197

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  +V+I TPGR+LD        M     LV+DEADRMLDMGF P I+ + S V   RQ
Sbjct: 198 GQSPEVVIATPGRLLDFLESRHTNMRRCTYLVLDEADRMLDMGFEPSIRRVVSQVRPDRQ 257

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E++ ++E+FL +  +I V +   +A       V    +  K        L
Sbjct: 258 TLMWSATWPREVKALAEDFLYDYIQINVGSTKLSANHNIRQHVEILNESEK--FKRLLSL 315

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       ++F   KK    LC  L+ +GF   A+HG+  Q+ R + L  F+EG I ++
Sbjct: 316 LNSFDNARVLVFTETKKRTDELCQKLQDKGFDATAMHGDKHQKERDRALDMFREGHISVL 375

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI DV ++ N+D P++ E+YIHRIGRTGR+ + G A+T  + +  +    
Sbjct: 376 VATDVASRGLDINDVRYIINYDYPSQTEDYIHRIGRTGRSDKKGTAYTFFSAKQPRLARE 435

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + +++++    +  +L  +
Sbjct: 436 LIEVLKEARQTIPDELFKI 454


>gi|125587400|gb|EAZ28064.1| hypothetical protein OsJ_12029 [Oryza sativa Japonica Group]
          Length = 472

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 131/435 (30%), Positives = 224/435 (51%), Gaps = 28/435 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+ P++V A    G+ +PT IQ + IP  L+  D+ G+ QTG+GKT +F LP++ 
Sbjct: 42  TFAELGVVPELVAACDAMGWKEPTRIQAEAIPHALEGRDLIGLGQTGSGKTGAFGLPIIQ 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   + + +     +L PTRELA Q+   FE  G    L+  +L+GG+    Q   L +
Sbjct: 102 AL-LKQDKPQALFACVLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVDRVQQAVSLAK 160

Query: 122 GADVLICTPGRI-LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+     +     +N ++ LV+DEAD++L++ F   + +I +++P  R+T
Sbjct: 161 RPHIVVGTPGRLLDHLTDTKGFSLNKLKYLVLDEADKLLNVEFQKALDDILNVIPKERRT 220

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT+++ K+    L+NP ++EV +  ST +T+   F    A Y     +      
Sbjct: 221 FLFSATMTNKVSKLQRACLRNPVKVEVASKYSTVDTLRQEFYFVPADYKDCFLVHVLNEL 280

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +    IF    ++   L  +L    F   +I G + Q  R+  L+ FK     +++
Sbjct: 281 PGSMIM---IFVRTCESTRLLALTLRNLRFKAISISGQMSQDKRLGALNRFKTKDCNILI 337

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A+RGLDI  V  V N+D+P  +++Y+HR+GRT RAG  G A +LV + +      I
Sbjct: 338 CTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLVNQYEAMWFKMI 397

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ------------HNHARKNN----------- 397
           EKL+  ++     D + +    E+I  ++            H   R+ N           
Sbjct: 398 EKLLGYEIPDRKVDNAEIMILRERISDSKRIALTTMKEGGGHKKKRRKNEDDEEEEERNA 457

Query: 398 PIPQKSTGFDRRKKN 412
           P+ +KS  F++ ++ 
Sbjct: 458 PVSRKSKSFNKSRRR 472


>gi|119471850|ref|XP_001258227.1| DEAD box RNA helicase (Hca4), putative [Neosartorya fischeri NRRL
           181]
 gi|134034072|sp|A1DNF9|DBP4_NEOFI RecName: Full=ATP-dependent RNA helicase dbp4
 gi|119406379|gb|EAW16330.1| DEAD box RNA helicase (Hca4), putative [Neosartorya fischeri NRRL
           181]
          Length = 810

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 125/454 (27%), Positives = 209/454 (46%), Gaps = 24/454 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL LS      +  + Y   T IQ + I   L+  DV G A+TG+GKT +F++P+L 
Sbjct: 48  SFSDLPLSEPTASGLASSHYKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPVLE 107

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L + +         LIL PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L 
Sbjct: 108 NLYRKQWAEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLKEEQERLG 167

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +            N+++LV+DEADR+LD+GF   +  I   +P  RQT
Sbjct: 168 RMNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIIGHLPKERQT 227

Query: 181 LLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT T ++      +           T SS   +             K   L   + 
Sbjct: 228 LLFSATQTKKVSDLARLSLQDPEYVAVHETASSATPSKLQQHYVITPLPQKLDILWSFIR 287

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +  +     +   ++   V       + G  +  +HG   Q  R+ I++ F +    ++
Sbjct: 288 SNLKSKTMVFLSSGKQVRFVYESFRHLQPGIPLMHLHGRQKQGGRLDIVTRFSQSKHCVL 347

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            ++D+AARGLD P V  V   D P  A+ YIHR+GRT R  R G+A   +   + + +  
Sbjct: 348 FSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYEREGRAVLFLDPSEEEGM-- 405

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +++L +KKV            P+EKI+I  +      + +  ++  F   +  Y  QK+ 
Sbjct: 406 LKRLEQKKV------------PIEKINIKANKQQSIKDQL--QNMCFKDPELKYLGQKAF 451

Query: 420 IP------LKESEKISKLQQDIQENDADSLGFRG 447
           I       +++ ++I KL++   +  A SLG  G
Sbjct: 452 ISYVKSVYIQKDKEIFKLKELKLDEFAASLGLPG 485


>gi|302789414|ref|XP_002976475.1| hypothetical protein SELMODRAFT_105510 [Selaginella moellendorffii]
 gi|300155513|gb|EFJ22144.1| hypothetical protein SELMODRAFT_105510 [Selaginella moellendorffii]
          Length = 613

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 144/427 (33%), Positives = 223/427 (52%), Gaps = 26/427 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD+ L P +   +    +VKPTP+Q   IP+ L   D+   AQTG+GKTA+F  P++ 
Sbjct: 154 SFADVDLGPVLNENIRRCKFVKPTPVQKHAIPISLHGRDLMACAQTGSGKTAAFCFPIIA 213

Query: 62  ILEKGRA---------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            +              R   P  LIL PTREL++Q+ D  +K+     + V ++ GG   
Sbjct: 214 GILWNFPPGSRHARGSRKAFPLALILSPTRELSSQIHDEAKKFAYQTGVKVVVIYGGTSV 273

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ---- 168
           ++Q K+LERG D+L+ TPGR+ D   RG++ ++ +  L +DEADRMLDMGF P I+    
Sbjct: 274 QSQLKELERGVDILVATPGRLDDLMQRGRISLSLVRYLALDEADRMLDMGFEPQIRKIVE 333

Query: 169 NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
           N     P  RQT+LFSAT   E+Q+++ +FL N   + V    S+ + I       +   
Sbjct: 334 NTDMPPPGQRQTMLFSATFPREIQRLAADFLYNYIFLAVGRVGSSTDLIVQRVEYVHDVD 393

Query: 229 SKKCALLQQLLQSQD----TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
            +   +     Q  +     +   ++F   K+   +L   L + G S   IHG+  Q  R
Sbjct: 394 KRSMLMDMIHAQKPNGLNGQLPLILVFVETKRGADSLEDWLIQMGISATTIHGDRTQVER 453

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
              L +F+ G   ++VA+D+AARGLDIP V HV N+D+P+  ++Y+HRIGRTGRAG+ G 
Sbjct: 454 EHALRSFRTGVTPILVATDVAARGLDIPHVAHVINYDLPSDIDDYVHRIGRTGRAGKSGF 513

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           A      +D      +  L+++    +   L+S          A H++  +++    +  
Sbjct: 514 ATAFFTDKDTSLARPLVDLMQEANQQVPEWLASC---------AAHSNFGRSHRSGSRFG 564

Query: 405 GFDRRKK 411
           G D RKK
Sbjct: 565 GRDYRKK 571


>gi|296475821|gb|DAA17936.1| probable ATP-dependent RNA helicase DDX4 [Bos taurus]
          Length = 729

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 130/429 (30%), Positives = 215/429 (50%), Gaps = 21/429 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 290 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPIL 349

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             + +          ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 350 AHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGH 409

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  ++ LV+DEADRMLDMGF P ++      
Sbjct: 410 SIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCP 469

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       +    QYSK
Sbjct: 470 GMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSK 529

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 530 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 587

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 588 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 647

Query: 351 -KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            + D +    +       V  L+     +   LE+I  + +      N         D R
Sbjct: 648 LESDSQLAQPL-------VKVLSDAQQDVPAWLEEIAFSTYGPGFSGNARGNVFASVDTR 700

Query: 410 KKNYSSQKS 418
            KNY  + S
Sbjct: 701 -KNYHGKSS 708


>gi|125577677|gb|EAZ18899.1| hypothetical protein OsJ_34439 [Oryza sativa Japonica Group]
          Length = 541

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 134/392 (34%), Positives = 207/392 (52%), Gaps = 17/392 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA++ L   +   +    YV+PTP+Q   IP+ L   D+   AQTG+GKTA+F  P+++
Sbjct: 74  TFAEIDLGQALNDNIRRCKYVRPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIIS 133

Query: 62  ILEKGR---------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            + +G           R   P  LIL PTREL+ Q+ +   K+     + V +  GG P 
Sbjct: 134 GIMRGPPAQRPQRGGMRTACPLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPI 193

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q + LERG D+L+ TPGR++D   R ++ + +I  L +DEADRMLDMGF P ++ I  
Sbjct: 194 NQQLRDLERGVDILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVE 253

Query: 173 LVPFTRQ----TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
            +         T+LFSAT   E+Q+++ +FL+N   + V    S+ + I           
Sbjct: 254 QMDMPPPGARQTMLFSATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQRVEFVQEAD 313

Query: 229 SKKCALLQQLLQSQD----TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
            +   +     Q            ++F   K+   +L H L   GF   +IHG+ +Q+ R
Sbjct: 314 KRSHLMDLLHAQRDSATPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQER 373

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
              L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G 
Sbjct: 374 EYALRSFKSGHTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGL 433

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
           A     + +     ++ +L+++    +   LS
Sbjct: 434 ATAFFNENNSSMARSLAELMQESNQEVPAWLS 465


>gi|115486155|ref|NP_001068221.1| Os11g0599500 [Oryza sativa Japonica Group]
 gi|122206897|sp|Q2R1M8|RH52C_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52C
 gi|77551918|gb|ABA94715.1| DEAD-box protein 3, X-chromosomal, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113645443|dbj|BAF28584.1| Os11g0599500 [Oryza sativa Japonica Group]
          Length = 623

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 134/392 (34%), Positives = 207/392 (52%), Gaps = 17/392 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA++ L   +   +    YV+PTP+Q   IP+ L   D+   AQTG+GKTA+F  P+++
Sbjct: 156 TFAEIDLGQALNDNIRRCKYVRPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIIS 215

Query: 62  ILEKGR---------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            + +G           R   P  LIL PTREL+ Q+ +   K+     + V +  GG P 
Sbjct: 216 GIMRGPPAQRPQRGGMRTACPLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPI 275

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q + LERG D+L+ TPGR++D   R ++ + +I  L +DEADRMLDMGF P ++ I  
Sbjct: 276 NQQLRDLERGVDILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVE 335

Query: 173 LVPFTRQ----TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
            +         T+LFSAT   E+Q+++ +FL+N   + V    S+ + I           
Sbjct: 336 QMDMPPPGARQTMLFSATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQRVEFVQEAD 395

Query: 229 SKKCALLQQLLQSQD----TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
            +   +     Q            ++F   K+   +L H L   GF   +IHG+ +Q+ R
Sbjct: 396 KRSHLMDLLHAQRDSATPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQER 455

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
              L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G 
Sbjct: 456 EYALRSFKSGHTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGL 515

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
           A     + +     ++ +L+++    +   LS
Sbjct: 516 ATAFFNENNSSMARSLAELMQESNQEVPAWLS 547


>gi|195399942|ref|XP_002058578.1| GJ14499 [Drosophila virilis]
 gi|194142138|gb|EDW58546.1| GJ14499 [Drosophila virilis]
          Length = 733

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 135/382 (35%), Positives = 208/382 (54%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA+  L   VV  +   GY  PTPIQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 283 DFAEAYLPDYVVKEIRRQGYKSPTPIQAQGWPIAMSGANFVGIAKTGSGKTLGYILPAIV 342

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   +   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 343 HINNQQPLQRGEGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 402

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 403 QRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 462

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL---Q 236
           TL++SAT   E+++++E+FL N  +I + +   +A       V    ++SK+  L     
Sbjct: 463 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEDKLKSLLS 522

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +  + +     IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G  
Sbjct: 523 DIYDTSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 582

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + K 
Sbjct: 583 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 642

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
             A+  ++ +    +N  L +L
Sbjct: 643 AKALVDVLREANQEINPALENL 664


>gi|296108765|ref|YP_003615714.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus infernus
           ME]
 gi|295433579|gb|ADG12750.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus infernus
           ME]
          Length = 357

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 137/369 (37%), Positives = 207/369 (56%), Gaps = 13/369 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           MDF  LGLS   + A+   G+ KPT IQ K IP++L    ++ G AQTGTGKTA+F LP+
Sbjct: 1   MDFKSLGLSDNTLKALKRKGFKKPTKIQEKIIPILLSEDVNIVGQAQTGTGKTAAFGLPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  +       +  + LIL PTRELA QVA+  +      NL +  + GG P + Q  KL
Sbjct: 61  IEKIN----DEKEIKALILTPTRELAKQVAEELKSLKGKKNLKIVEIYGGKPIKEQIYKL 116

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +++ TPGR+LDH  R  + + N+   V+DEAD ML+MGFI  ++ I       + 
Sbjct: 117 RGAN-IVVGTPGRLLDHIKRKTINLKNLSYFVLDEADEMLNMGFIEDVEEILKHTNDDKN 175

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT+  E+  +++ ++++ K I+V +  +  E         + + S          
Sbjct: 176 ILLFSATLPREILNLAKKYMRDYKLIKVKSSKNLIEQK-------HFKVSNSEKFNLLCK 228

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +    G+IFC  +++V NL   L ++G+S  A HG + Q  R KIL  FK   I ++
Sbjct: 229 IINEENFYGLIFCKTREDVKNLARKLIEKGYSAEAFHGKLSQFRREKILKRFKMKKINIL 288

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++D+AARG+DI  + HV N+ +P   E Y+HRIGRTGRAG+ GKA T V   + K    
Sbjct: 289 VSTDVAARGIDIEGLTHVINYSLPQNPEYYVHRIGRTGRAGKRGKAITFVEPHEYKKYAH 348

Query: 360 IEKLIEKKV 368
           +++ + KK+
Sbjct: 349 MKRCLCKKL 357


>gi|74654532|sp|Q9Y7C4|ROK1_CANAL RecName: Full=ATP-dependent RNA helicase CHR1
 gi|4589366|gb|AAD26468.1| DEAD box RNA helicase [Candida albicans]
          Length = 578

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 120/453 (26%), Positives = 199/453 (43%), Gaps = 17/453 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F D+     ++ KV+  ++D  +++PTPIQ ++IP+ L   D+   A TG+GKT +F++
Sbjct: 128 SFQDMIGRFHINKKVLSNLIDNEFIEPTPIQCESIPITLNNRDLIACAPTGSGKTLAFLI 187

Query: 58  PMLTIL-EKGRARVRMPRTLILEPTRELAAQVADNFEK--YGKNYNLTVALLIGGIPFEA 114
           P++  +  K  ++    R LI+ PT ELA Q+    E    G        L         
Sbjct: 188 PLVQQILSKNVSKNHGIRGLIISPTNELAVQIFQELEIITRGCKQINVAILSKQLASKLN 247

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
            N       D+++ TP R++D   +G + ++ IE L+IDEAD++ D GF      I +  
Sbjct: 248 NNIIKSSKYDIIVSTPLRLIDVVKQGNMDLSKIEQLIIDEADKLFDHGFAEQTDEILTHC 307

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              +      +       +   + +       +      A       +        K   
Sbjct: 308 TNLKIRKSIFSATIPSSVEEMAHSIMKDPLRIIIGHKEAASNTIDQKLVFTGNEQGKLLA 367

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           ++Q++Q  +     IIF         L H L     +V  IH     + R +++  FK G
Sbjct: 368 IRQMIQQGEFKPPIIIFLQSITRAKALFHELLYDRLNVDVIHAERTPKQREEVIKRFKNG 427

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I +++ +D+ ARG+D   V  V N+DVP  A+ Y+HRIGRTGR G+ GKA T   KED 
Sbjct: 428 DIWVLITTDVLARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDD 487

Query: 355 KHIDAIEKLIEKK------VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           K I  I  ++++         W+  D+  L+   EK  I  H   RK   I        +
Sbjct: 488 KAIKPILNVMKQSGCNDGYSQWME-DMGKLSKK-EKKQIKTHEIQRKK--ISTVPKVIKQ 543

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDAD 441
           ++K      +    ++ E   K +Q+   ND  
Sbjct: 544 KRKQRQDMIAASKRRKQESKQKSKQESHSNDER 576


>gi|255085454|ref|XP_002505158.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
 gi|226520427|gb|ACO66416.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
          Length = 675

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 124/396 (31%), Positives = 201/396 (50%), Gaps = 17/396 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G  +PTPIQI+ +P++L   D+ GIA TG+GK+ +FVLPM+ 
Sbjct: 229 TFREMKFPKPIIDELTRKGIARPTPIQIQGLPVILSGRDIIGIAFTGSGKSLTFVLPMIM 288

Query: 62  ILEKGRARVR-----MPRTLILEPTRELAAQVADNFE-------KYGKNYNLTVALLIGG 109
                  R+       P  LIL P+RELA Q  +  E       K G      +  + G 
Sbjct: 289 AAMMEEHRMPLEGGEGPVGLILCPSRELARQTHEVIEGFTVELAKQGMAQMRIMLCIGGV 348

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
              E  +     G  ++  TPGR+ D  ++ ++ ++  + L +DEADRM+D+GF   I++
Sbjct: 349 DSREQSDIVRNAGVHMVTATPGRLKDLLHKKRMNLDICKYLCMDEADRMVDLGFEDDIRD 408

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I S     RQTLLFSATM ++++K    F ++     +      A       +       
Sbjct: 409 IYSFFKSQRQTLLFSATMPEKIRK----FAESALVNPIVVNVGRAGAANLDVIQEVEYVK 464

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           ++  ++  L   Q T    +IFC  K +V ++   L  +G    AIHG   Q  R   +S
Sbjct: 465 QEAKIVYLLECLQKTAPPVLIFCENKGDVDDIHEYLLLKGVEAVAIHGGKGQDERDWAIS 524

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK     ++VA+D+A +GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T +
Sbjct: 525 EFKAQRKDVLVATDVAGKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRCGKTGIATTFI 584

Query: 350 AKEDIKH-IDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
            K   +  +  ++ L+ +    +   L+ L+ P+++
Sbjct: 585 NKNQSETILLDLKHLLREAKQRIPPVLAMLDDPMDQ 620


>gi|195061826|ref|XP_001996076.1| GH14289 [Drosophila grimshawi]
 gi|193891868|gb|EDV90734.1| GH14289 [Drosophila grimshawi]
          Length = 746

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 133/382 (34%), Positives = 209/382 (54%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF++  L   VV  +   GY  PTPIQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 300 DFSEAYLPDYVVKEIRRQGYKSPTPIQAQGWPIAMSGANFVGIAKTGSGKTLGYILPAIV 359

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   +   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 360 HINNQQPLQRGEGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 419

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 420 QRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 479

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL---Q 236
           TL++SAT   E+++++E+FL N  +I + +   +A       V    ++SK+  L     
Sbjct: 480 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEDKLKSLLS 539

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +  + +     IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G  
Sbjct: 540 DIYDTSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 599

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + K 
Sbjct: 600 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 659

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
             ++  ++++    +N  L +L
Sbjct: 660 AKSLVDVLKEANQEINPALENL 681


>gi|240280856|gb|EER44360.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Ajellomyces
            capsulatus H143]
          Length = 1200

 Score =  151 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 139/483 (28%), Positives = 224/483 (46%), Gaps = 20/483 (4%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
             ++  GL  + +  +    Y  PT IQ + IP ++   DV G+A+TG+GKT +F+LPM  
Sbjct: 565  KWSQCGLGVQTLDVIRKLNYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFR 624

Query: 62   ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   R    +  P  LI+ PTRELA Q+    + + K  NL      GG P + Q  +L
Sbjct: 625  HIMDQRPLENMEGPIGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAEL 684

Query: 120  ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +RGA++++CTPGR++D           +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 685  KRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRILGNVRP 744

Query: 177  TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL- 235
             RQT+LFSAT    ++ ++   L  P  I V   S  A  I                L  
Sbjct: 745  QRQTVLFSATFPRNMEALARKTLAKPVEIIVGGKSVVAPEITQIVEVRNQDTKFVRLLAL 804

Query: 236  --QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
              +     ++     +IF ++++    L   L  +G+   +IHG  DQ  R   + +FK 
Sbjct: 805  LGELYADDKNEDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIDDFKA 864

Query: 294  GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 865  GVFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 924

Query: 354  IKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHA-------RKNNPIPQ-KST 404
             ++   I K +++    +   +  L N  +EK+   +   +       R      Q +  
Sbjct: 925  ERYSVDISKALKQSGQPVPEPVQKLVNSFMEKVKAGKEKASGSGFGGQRTGGVFDQERDA 984

Query: 405  GFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR---GKL 461
              +R +K Y + +     +  EK  K      +  +         P   +PK     GK+
Sbjct: 985  ARNRERKTYKTGEEGEEEEREEKKDKKDDLFSKAASAVQATATPAPTPGVPKGIDLDGKI 1044

Query: 462  NDK 464
               
Sbjct: 1045 TVH 1047


>gi|46143736|ref|ZP_00134588.2| COG0513: Superfamily II DNA and RNA helicases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307256578|ref|ZP_07538359.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864988|gb|EFM96890.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 406

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 123/398 (30%), Positives = 202/398 (50%), Gaps = 6/398 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   V+ A+   G+   TPIQ KT+P+ L   D+ G AQTGTGKT +F++ +   
Sbjct: 10  FIDFPIHENVLAALDSKGFEFCTPIQAKTLPITLAGQDIAGQAQTGTGKTLAFLIAVFHY 69

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                       PR +IL PTRELA Q+  + E   K+ +L +AL  GG  ++ Q + +E
Sbjct: 70  LLTNDSVTNKNQPRAIILAPTRELAVQIGSDAELLVKHSDLKLALAYGGDGYDKQVQAIE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ T GR++D+  +G + ++ ++++V+DEADRM D+GFI  I+ +    P   Q 
Sbjct: 130 QGVDILVGTTGRVIDYVKQGIINLDKVQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEQR 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L    + T   +     +        +        T        +   ++    L   L 
Sbjct: 190 LTMLFSATLSARVRELAYEDMNNAQYI-EIEPLQRTGHRIKEELFYPSNEDKMALLLTLL 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     +IF N K     + + L   G  V  + G+I Q+ R+ +L +F +G + ++V
Sbjct: 249 EEEWPDRCMIFANTKHKCEEIWNYLVADGHRVGLLTGDIAQKKRLALLDSFTKGQLDILV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL IP+V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +    ++ AI
Sbjct: 309 ATDVAARGLHIPEVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISFACERYAVNLPAI 368

Query: 361 EKLIEKKVDWLNGD---LSSLNPPLEKIDIAQHNHARK 395
           E  I   +     D   L +L  P        +   ++
Sbjct: 369 EAYIGHHIPVSQYDSGALLTLPKPTRSRTTRSYQTKKR 406


>gi|109079956|ref|XP_001092587.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 isoform 3
           [Macaca mulatta]
          Length = 622

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 127/389 (32%), Positives = 193/389 (49%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 182 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 361

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 362 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKE 417

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  D   R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDHEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 538 KACDESVLMDLKALLLEARQKVPPVLQVL 566


>gi|302766257|ref|XP_002966549.1| hypothetical protein SELMODRAFT_230807 [Selaginella moellendorffii]
 gi|300165969|gb|EFJ32576.1| hypothetical protein SELMODRAFT_230807 [Selaginella moellendorffii]
          Length = 581

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 133/392 (33%), Positives = 208/392 (53%), Gaps = 16/392 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+GL   V+  + + G   PTPIQ++ +P +L   D+ G+A TG+GKT +FVLP++ 
Sbjct: 144 SFKDMGLPKSVLRKLKEKGVKHPTPIQVQGLPAILSGRDMIGVAFTGSGKTLAFVLPLIM 203

Query: 62  ILEKGRARVR-----MPRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
           +  K   R R      P  LIL P+RELA Q  D  E++       +  +L   L IGG 
Sbjct: 204 LALKEEERSRLKGGEGPVGLILCPSRELAKQTFDVIEEFVSMVNSSRCCHLRAMLCIGGT 263

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + + RG  +++ TPGR+ D   + K+ +   + L +DEADR+ D GF   I+ +
Sbjct: 264 GMRSQLEAIRRGVHIVVATPGRLNDMLEKKKMNLERCKYLTLDEADRLCDSGFEDDIRKV 323

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
              + F RQTLLFSATM  ++Q+    F +      V    + A       V       +
Sbjct: 324 MDHLKFQRQTLLFSATMPRKIQE----FARGALVKPVVVNVARAGAASLDVVQQVEFVKQ 379

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IFC  K  V ++   L  +G  V +IHG  DQ  R   ++ 
Sbjct: 380 EAEMVYLLECLQQTPPPVLIFCESKGEVDSIYEYLVLKGVEVVSIHGGKDQEERQDAITK 439

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV- 349
           FK+G   ++VA+D+A++GLD P + HV N+D+P+  ENY+HRIGRTGR G+ G A T + 
Sbjct: 440 FKQGRKDVLVATDVASKGLDFPSIQHVINYDMPSEIENYVHRIGRTGRCGKTGIATTFIN 499

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           +++    +  ++ L+ +    +   L SL  P
Sbjct: 500 SRQSESTLLDLKYLLREAKQKVPVFLESLEDP 531


>gi|156406955|ref|XP_001641310.1| predicted protein [Nematostella vectensis]
 gi|156228448|gb|EDO49247.1| predicted protein [Nematostella vectensis]
          Length = 487

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 122/382 (31%), Positives = 196/382 (51%), Gaps = 19/382 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++ A+   G   PTPIQ++ +P VL   D+ GIA TG+GKT  F LP++ 
Sbjct: 48  TFKEMKFPRPILAALKKKGITHPTPIQVQGLPAVLTGRDMIGIAFTGSGKTLVFTLPIIM 107

Query: 62  I-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
                       R   P  +I+ P+RELA Q  +    + +             L IGG 
Sbjct: 108 FSLEQEKAMPFQRNEGPYGMIVVPSRELARQTFEVITHFSRALEAHGFPSLRTNLCIGGS 167

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q+  ++RG  +++ TPGR++D  ++  + ++    LV+DEADRM+DMGF   ++ I
Sbjct: 168 SIKEQSDAMKRGVHMVVATPGRLMDLLDKRIITLDVCRYLVLDEADRMIDMGFEEDVRTI 227

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 228 FSYFKSQRQTLLFSATMPKKIQN----FAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQ 283

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V ++   L  +G    AIHG+  Q  R+  +  
Sbjct: 284 EAKVVYLLECLQKTPPPVLIFAEKKSDVDDIHEYLLLKGVEAVAIHGDKSQEERVHAIRE 343

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F +G   ++VA+D+A++GLD PD+ HV NFD+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 344 FHQGNKDVLVATDVASKGLDFPDIQHVINFDMPEDIENYVHRIGRTGRCGKTGVATTFIN 403

Query: 351 KE-DIKHIDAIEKLI---EKKV 368
           K  +   +  ++ L+   ++K+
Sbjct: 404 KSCEESVLLDLKHLLMEAKQKI 425


>gi|119495979|ref|XP_001264763.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
 gi|143359979|sp|A1D373|PRP5_NEOFI RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|119412925|gb|EAW22866.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
          Length = 1193

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 130/439 (29%), Positives = 212/439 (48%), Gaps = 18/439 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M ++  GL  + +  +   GY  PT IQ + IP ++   DV G+A+TG+GKT +F++PM 
Sbjct: 557 MKWSQCGLGVQTLDVIHRLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMF 616

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +   R    +  P  LI+ PTRELA Q+  + + + K  NL      GG P + Q  +
Sbjct: 617 RHIRDQRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAE 676

Query: 119 LERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           L+RGA++++CTPGR++D           +  +  +V+DEADRM DMGF P +  I + + 
Sbjct: 677 LKRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIR 736

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC--- 232
             RQT+LFSAT    ++ ++   L  P  I V   S  A  I                  
Sbjct: 737 PDRQTVLFSATFPRNMEALARKSLTKPIEIVVGGKSVVAPEITQIVEVRNEDTKFVRLLE 796

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L        +     +IF ++++    L   L ++G+   +IHG  DQ  R   + +FK
Sbjct: 797 ILGNLYSDDANEDARALIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFK 856

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + +E
Sbjct: 857 AGIFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEE 916

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
             ++   I K + +    +   +  + +  LEK+   +   +         ++GF  +  
Sbjct: 917 QERYSVDIAKALRQSGQKVPEPVQKMVDSFLEKVKAGKEKAS---------ASGFGGKGL 967

Query: 412 NYSSQKSHIPLKESEKISK 430
               Q+         +  K
Sbjct: 968 ERLDQERDAARMRERRTYK 986


>gi|550331|emb|CAA57418.1| putative RNA helicase [Dictyostelium discoideum]
          Length = 566

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 123/419 (29%), Positives = 212/419 (50%), Gaps = 29/419 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  L  +++ A+   GY KP+PIQ+++IP+ L   D+ GIA+TG+GKT +FV+PML 
Sbjct: 146 TWQESNLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPMLI 205

Query: 62  ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + K            P  L++ PTREL  Q+      + +++   V  L+GG   E Q 
Sbjct: 206 YISKQPRLTKDTEADGPYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGGQSIEDQA 265

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY---------- 166
            ++ +G +++I TPGR+ D   +  L++N    +V+DEAD M+D+GF P           
Sbjct: 266 YQVSKGCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQVTSVLDAMPS 325

Query: 167 -----------IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
                       +  +      R T+LFSATM   ++K+S+ +L+ P  I +       +
Sbjct: 326 SFLKSEDDEMAEKQESDRSHIYRTTILFSATMPPLVEKLSKKYLRRPCTITIGEAGKVVD 385

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
            I    +   ++  KK  L Q +          IIF N+KK+   +   LE+   S   +
Sbjct: 386 RIRQTVIFVKSENDKKEHLTQLIKDGPPPPI--IIFVNKKKHCDIIAPVLEECRVSYTIL 443

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           H    Q  R   L  FK+   ++++A+ +A+RG+ +  V HV NFD+P   E+Y HRIGR
Sbjct: 444 HSGRSQEQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIPKNIEDYTHRIGR 503

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ-HNHA 393
           TGRAG  G A + +  +D++ +  +++++    + +  +L       +K   ++ HN +
Sbjct: 504 TGRAGSAGLASSFITDKDVEIMYDLKQILTSTNNIVPIELLKHPSSQQKHGSSKDHNKS 562


>gi|68249479|ref|YP_248591.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 86-028NP]
 gi|68057678|gb|AAX87931.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 86-028NP]
          Length = 418

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 195/379 (51%), Gaps = 4/379 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P V  A+   G+   TPIQ  ++P+ L   DV G AQTGTGKT +F+      
Sbjct: 14  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 73

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        PRTLIL PTRELA Q++++ E   K   L  AL  GG  ++ Q + +
Sbjct: 74  LLTHQDPNLEYPHPRTLILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQVI 133

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+LI T GR++D+  +G + ++ I+++V+DEADRM D+GFI  I+ +    P  + 
Sbjct: 134 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 193

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L    + T   +     F       E        +T        +   ++    L   L
Sbjct: 194 RLTMLFSATLSYKVRELAFEDMND-PEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTL 252

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F N K     +   L   G  V  + G++ Q+ R+ +L  F +G + ++
Sbjct: 253 MEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDIL 312

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGL I DV HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +E   ++  
Sbjct: 313 VATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPG 372

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+ I   +     +  +L
Sbjct: 373 IEEYIGHSIPVSQYETEAL 391


>gi|207367146|dbj|BAG72093.1| vasa [Trachurus japonicus]
          Length = 657

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 127/388 (32%), Positives = 203/388 (52%), Gaps = 13/388 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 219 MTFEEAALCESLRKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 278

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + ++ P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 279 QKLMADGVAASQFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVASGH 338

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
           Q + + RG ++L  TPGR+LD   RGK+ +  +  LV+DEADRMLDMGF P ++      
Sbjct: 339 QIRDICRGCNILCGTPGRLLDVIGRGKVGLEKLRYLVLDEADRMLDMGFEPDMRRLVGSP 398

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  R TL+FSAT  +++Q+++ +FL+             A +          ++SK
Sbjct: 399 GMPTKENRNTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIEVTKFSK 458

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L+          +  ++F   K+    +   L +      +IHG+ +QR R + L++
Sbjct: 459 REQLVDL--LKATGSERTMVFVETKRQADFIATFLSQTKIPTTSIHGDREQREREQALAD 516

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDIPDV HV NFD+PN  + Y+HRIGRTGR G  G+A +   
Sbjct: 517 FRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYD 576

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSS 377
           ++ D +   A+  ++ K    +   L  
Sbjct: 577 QDADGQLARALVTILSKAQQTVPSWLEE 604


>gi|160380697|sp|Q0CMM5|DBP4_ASPTN RecName: Full=ATP-dependent RNA helicase dbp4
          Length = 804

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 124/454 (27%), Positives = 218/454 (48%), Gaps = 26/454 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL LS   +  +  + Y   T IQ + +   L+  D+ G A+TG+GKT +F++P+L  
Sbjct: 48  FTDLPLSEPTLSGLSASHYKTLTDIQSRAVSHALKGRDILGAAKTGSGKTLAFLIPVLEN 107

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         LIL PTRELA Q+ +   K G+ ++ +  L+IGG   + + ++L +
Sbjct: 108 LYRKQWAEHDGLGALILSPTRELAIQIFEVLRKVGRYHHFSAGLVIGGKSLKEEQERLGK 167

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +            N+++LV+DEADR++DMGF   +  I   +P  RQT+
Sbjct: 168 MNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRIMDMGFQKTVDAIIGHLPKERQTM 227

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T ++  ++   LQ+P+ + V+  +++A               +K   +      
Sbjct: 228 LFSATQTKKVSDLARLSLQDPEYVAVHEAAASATPSTLQQHYVVTPLPQKL-DILWSFIR 286

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +     I+F +  K V  +  +       +    +HG   Q  R+ I + + +    ++
Sbjct: 287 SNLKSKTIVFLSSGKQVRFVYEAFRHLQPGIPLMHLHGRQKQGGRLDITTKYSQAKHAVL 346

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            ++D+AARGLD P V  V   D P  A+ YIHR+GRT R  R G+A   +   + + +  
Sbjct: 347 FSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEQGM-- 404

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +++L +KKV            P+EKI++  +      N +  ++  F   +  Y  QK+ 
Sbjct: 405 LKRLEQKKV------------PVEKINVKANKQQSIKNQL--QNMCFKDPELKYLGQKAF 450

Query: 420 IP------LKESEKISKLQQDIQENDADSLGFRG 447
           I       +++ ++I KL+    E  A SLG  G
Sbjct: 451 ISYVKSVYVQKDKEIFKLKDLDLEEFASSLGLPG 484


>gi|148686462|gb|EDL18409.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Mus musculus]
          Length = 715

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 120/389 (30%), Positives = 202/389 (51%), Gaps = 13/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP+VL   D+   AQTG+GKTA+F+LP+L
Sbjct: 274 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPIL 333

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             + +          ++ P  +I+ PTREL  Q+     K+     +   ++ GG  F  
Sbjct: 334 AHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGH 393

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +++ +G ++L  TPGR++D   + K+ +  ++ LV+DEADRMLDMGF P ++ + S  
Sbjct: 394 SVRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCP 453

Query: 175 PFTRQTLL----FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
               +       FSAT  +E+Q+++ +FL++            A       +    QYSK
Sbjct: 454 GMPSKEQRQTLLFSATFPEEIQRLAGDFLKSSYLFVAVGQVGGACRDVQQTILQVGQYSK 513

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 514 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 571

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV- 349
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 572 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 631

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
              D      + K++      +   L  +
Sbjct: 632 TDSDNHLAQPLVKVLSDAQQDVPAWLEEI 660


>gi|225007636|ref|NP_001139357.1| probable ATP-dependent RNA helicase DDX4 isoform 1 [Mus musculus]
 gi|74223562|dbj|BAE21618.1| unnamed protein product [Mus musculus]
 gi|187950715|gb|AAI37602.1| Ddx4 protein [Mus musculus]
 gi|219519729|gb|AAI44761.1| Ddx4 protein [Mus musculus]
          Length = 728

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 120/389 (30%), Positives = 202/389 (51%), Gaps = 13/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP+VL   D+   AQTG+GKTA+F+LP+L
Sbjct: 287 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPIL 346

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             + +          ++ P  +I+ PTREL  Q+     K+     +   ++ GG  F  
Sbjct: 347 AHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGH 406

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +++ +G ++L  TPGR++D   + K+ +  ++ LV+DEADRMLDMGF P ++ + S  
Sbjct: 407 SVRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCP 466

Query: 175 PFTRQTLL----FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
               +       FSAT  +E+Q+++ +FL++            A       +    QYSK
Sbjct: 467 GMPSKEQRQTLLFSATFPEEIQRLAGDFLKSSYLFVAVGQVGGACRDVQQTILQVGQYSK 526

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 527 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 584

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV- 349
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 585 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 644

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
              D      + K++      +   L  +
Sbjct: 645 TDSDNHLAQPLVKVLSDAQQDVPAWLEEI 673


>gi|33859536|ref|NP_034159.1| probable ATP-dependent RNA helicase DDX4 isoform 2 [Mus musculus]
 gi|20141439|sp|Q61496|DDX4_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Mvh; AltName:
           Full=Vasa homolog
 gi|12852922|dbj|BAB29578.1| unnamed protein product [Mus musculus]
          Length = 702

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 120/389 (30%), Positives = 202/389 (51%), Gaps = 13/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP+VL   D+   AQTG+GKTA+F+LP+L
Sbjct: 261 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPIL 320

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             + +          ++ P  +I+ PTREL  Q+     K+     +   ++ GG  F  
Sbjct: 321 AHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGH 380

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +++ +G ++L  TPGR++D   + K+ +  ++ LV+DEADRMLDMGF P ++ + S  
Sbjct: 381 SVRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCP 440

Query: 175 PFTRQTLL----FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
               +       FSAT  +E+Q+++ +FL++            A       +    QYSK
Sbjct: 441 GMPSKEQRQTLLFSATFPEEIQRLAGDFLKSSYLFVAVGQVGGACRDVQQTILQVGQYSK 500

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 501 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 558

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV- 349
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 559 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 618

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
              D      + K++      +   L  +
Sbjct: 619 TDSDNHLAQPLVKVLSDAQQDVPAWLEEI 647


>gi|212542881|ref|XP_002151595.1| DEAD/DEAH box RNA helicase [Penicillium marneffei ATCC 18224]
 gi|210066502|gb|EEA20595.1| DEAD/DEAH box RNA helicase [Penicillium marneffei ATCC 18224]
          Length = 1207

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 124/451 (27%), Positives = 218/451 (48%), Gaps = 16/451 (3%)

Query: 1    MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            + ++  GL  + +  +   GY  PT IQ + +P ++   DV G+A+TG+GKT SF+LPM 
Sbjct: 575  LKWSQCGLGVQTLDVISKLGYEHPTSIQSQALPAIMSGRDVIGVAKTGSGKTVSFLLPMF 634

Query: 61   TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
              ++  R    +  P +LI+ PTRELA Q+  + + + K  NL      GG P + Q  +
Sbjct: 635  RHIKDQRPLENMEGPISLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAE 694

Query: 119  LERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            L+RGA++++CTPGR++D           +  +  +V+DEADRM DMGF P +  I + + 
Sbjct: 695  LKRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMTNIR 754

Query: 176  FTRQTLLFSATMTDELQ---KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
              +QT+LFSAT    ++   + +            +  +     I               
Sbjct: 755  PNKQTVLFSATFPRNMEALARKTLIKPVEIIVGGRSVVAPEITQIVEVRNENTKFLRLLE 814

Query: 233  ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L        +     +IF ++++   +L   L ++G+   +IHG  DQ  R   + +FK
Sbjct: 815  LLGNLYSDEANEDARTLIFVDRQEAADSLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFK 874

Query: 293  EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
             G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++
Sbjct: 875  AGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTED 934

Query: 353  DIKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARK-------NNPIPQKST 404
              ++   I K +++    +   +  L +  LEK+   +   +              ++  
Sbjct: 935  QERYSVDIAKALKQSGQAVPEPVQKLVDSFLEKVKAGKEKASASGFGGKGLERLDQERDA 994

Query: 405  GFDRRKKNYSSQKSHIPLKESEKISKLQQDI 435
              +R +K Y + +     +  +   K  ++I
Sbjct: 995  ARNRERKTYRTGEDGDEEEREDAKEKKGEEI 1025


>gi|170736688|ref|YP_001777948.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169818876|gb|ACA93458.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 465

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 156/422 (36%), Positives = 228/422 (54%), Gaps = 24/422 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GYV  TPIQ  ++P+ L   D+   A+TG+GKTA+F L +L  
Sbjct: 9   FSALPLTPATLANLAQLGYVDMTPIQAASLPVALAGQDLIAQAKTGSGKTAAFSLALLAR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + +IL PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 69  LDA---RSFDVQAMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  + P TRQTL
Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL+NPK I++      ++         Y     +       L +
Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEIKLAERHDDSKI----RQRFYEVTEDERLHAVGQLLN 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 242 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +LV+ +++  + AIE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLVSMDEMGRVGAIE 361

Query: 362 KLIEKKVDW------LNGDLSSLNPPLEKIDIAQHNHARKNNPIP-------QKSTGFDR 408
           +  +++V+W         D S L PP+E + I      RK+   P           GFD 
Sbjct: 362 QAQKREVEWHPLAELKPADDSVLLPPMETLQIL---GGRKDKIRPGDVLGALTGDAGFDG 418

Query: 409 RK 410
           ++
Sbjct: 419 KQ 420


>gi|300113246|ref|YP_003759821.1| DEAD/DEAH box helicase domain-containing protein [Nitrosococcus
           watsonii C-113]
 gi|299539183|gb|ADJ27500.1| DEAD/DEAH box helicase domain protein [Nitrosococcus watsonii
           C-113]
          Length = 431

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 134/425 (31%), Positives = 219/425 (51%), Gaps = 7/425 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L L+  ++  +  AG+V  TPIQ   +PL+L   DV G AQTGTGKTA+F+L  +
Sbjct: 9   ISFDSLNLAEALIQGIQKAGFVICTPIQALALPLLLAGEDVAGQAQTGTGKTAAFLLATM 68

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                E      + PR LI+ PTRELA QV+ + +  G++ +L   ++ GG  +  Q   
Sbjct: 69  QRLLREPSVGVSQQPRGLIVVPTRELAIQVSKDAQLLGQHTDLRCVVVYGGTNYRKQRHL 128

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE+G D+LI TPGR++D++ +G +    I+ +V+DEADRM D+GFI  I+ I   +P   
Sbjct: 129 LEQGCDILIGTPGRLIDYYQQGIIGFKKIQTVVLDEADRMFDLGFIRDIRYILRRLPPPD 188

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           + L    + T  L+ +   +        +          +      +    +K +LL   
Sbjct: 189 KRLGMLFSATLSLRVMELAYEYMNNPRLLRIEPQKVTVDKITERIYFPANEEKISLLLA- 247

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +   ++ I+F N K     +   LE  GF    +  ++ Q  R ++L+ F++G   +
Sbjct: 248 LLKRLAPRHAIVFANTKHGAEQVWGYLEGNGFKAALLSSDVPQGKRQRLLTAFQDGIYPI 307

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGL +  V HVFN+D+P   E+Y+HRIGRT RAG  G A +   ++    + 
Sbjct: 308 LVATDVAARGLHVSTVTHVFNYDLPQDPEDYVHRIGRTARAGASGSAVSFACEDYAFSLP 367

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP---QKSTGFDRRKKNYSS 415
            IE+ I  KV   + +   L  P +++ ++  +  +         QK   F R+K+  S 
Sbjct: 368 DIEEYIGHKVVPFSVEEEELLVPKQRVFLSYKDKKKSRKEASYSGQKKRTF-RKKETPSG 426

Query: 416 QKSHI 420
            K+  
Sbjct: 427 GKNRT 431


>gi|238784177|ref|ZP_04628190.1| ATP-dependent RNA helicase srmB [Yersinia bercovieri ATCC 43970]
 gi|238714886|gb|EEQ06885.1| ATP-dependent RNA helicase srmB [Yersinia bercovieri ATCC 43970]
          Length = 441

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 143/447 (31%), Positives = 235/447 (52%), Gaps = 14/447 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP + 
Sbjct: 5   NFSELDLDERLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K+  L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I +   + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT   + +++ +E  L+ P  +E +      + I+  +        K        L
Sbjct: 185 LLFSATLEGEAIREFAERILEEPVELEADPSRRERKKIQQWYYRADDIEHKTAL--LVHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  ++  IIF   ++ V  L   L + G +   + G + Q  R + +    +G + ++
Sbjct: 243 LKQPEVQKSIIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDIASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHDHLLLGR 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           I + +++ +      +  L P       ++   ++      +K     +  K  S +K+ 
Sbjct: 363 IGRYLKEPLK--PRVIDELRP------TSKEPSSKSTGKPSKKVLAKRKELKEASKEKAK 414

Query: 420 IPL--KESEKISKLQQDIQENDADSLG 444
           + +  ++++ + K +Q  ++ D  S G
Sbjct: 415 VKVRHRDAKNVGKRRQPKEKADTKSNG 441


>gi|319783363|ref|YP_004142839.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169251|gb|ADV12789.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 474

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 155/387 (40%), Positives = 238/387 (61%), Gaps = 8/387 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++ A  +AG+ +P PIQ + IP  ++  D+ GIAQTG+GKTA+F LP+L+ 
Sbjct: 18  FAALGITGALLKATHNAGFTEPKPIQAQAIPPQMEGRDIFGIAQTGSGKTAAFALPILSK 77

Query: 63  LEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+ D  +   K  +++ AL++GG+   +Q KK+ 
Sbjct: 78  IIALGTKRRPKTARALILAPTRELAVQIEDTIKILAKGAHVSTALVLGGVSRFSQVKKVA 137

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+LI TPGR+ D    G L++ + + LV+DE DRMLDMGFI  ++ I       RQT
Sbjct: 138 PGVDILIATPGRLTDLVREGDLMLADTKWLVLDEGDRMLDMGFINDVKRIAKATAPDRQT 197

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM +E+ ++++  L+NP R+EV   S+ A  I           +K+   +   + 
Sbjct: 198 VLFSATMPNEIAELAKGLLKNPIRVEVAPQSTAAAEIVQ---GVVFARTKQKRQVLSTML 254

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + +TMK+ IIF   K     +   LE+ GF    IHGN  Q +R K L++F++G+++++V
Sbjct: 255 ADETMKSVIIFSRTKHGADRVTKDLERDGFKAAVIHGNKSQNARQKALNDFRDGSVRILV 314

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+P + HV NFD+P+ AE+Y+HRIGRTGR G  G A TL    +   +  +
Sbjct: 315 ATDIAARGIDVPGISHVVNFDLPDEAESYVHRIGRTGRNGMDGIAITLCDPSENSKLRQV 374

Query: 361 EKLIEKKVDWLNGDLSSLNP---PLEK 384
           E++I  K+  +   L S +P   P EK
Sbjct: 375 ERIIRTKLPIVADHLGSPDPLRNPAEK 401


>gi|262278447|ref|ZP_06056232.1| ATP-dependent RNA helicase rhlB [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258798|gb|EEY77531.1| ATP-dependent RNA helicase rhlB [Acinetobacter calcoaceticus
           RUH2202]
          Length = 383

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 201/377 (53%), Gaps = 6/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++  A+   G+ + TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 5   FETLNLHPQLKKAIDALGFKQMTPIQQKVLKYTLGGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 63  LEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L     + +     PR LIL PTRELA Q+  + +   K  +L V  L+GG+ F+ Q K+
Sbjct: 65  LLHNPIQEQRFRGEPRALILAPTRELALQIESDAKLLTKFSDLHVVTLLGGVDFDKQKKQ 124

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P  
Sbjct: 125 LDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRK 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            +      + T     V     Q              +T        Y    +    L Q
Sbjct: 185 EERQTLMFSAT-FSYDVLNLARQWLFEPITVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQ 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  ++ +   +IF N++  V  L   L++ G+ V  + G I Q  R+K+L  FK+G   
Sbjct: 244 DILREEPIDKVMIFANRRDQVRRLYDHLKRDGYRVGMLSGEIAQDKRLKMLDQFKQGKNN 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +M+A+D+A RG+ +  V HV N+ +P ++++Y+HRIGRTGRAG  G + + ++++D  ++
Sbjct: 304 IMIATDVAGRGIHVDGVSHVVNYTLPEQSDDYVHRIGRTGRAGSQGVSISFLSEDDAFYL 363

Query: 358 DAIEKLIEKKVDWLNGD 374
             IEK I KK+     +
Sbjct: 364 PEIEKAIGKKLPLTRIE 380


>gi|168034811|ref|XP_001769905.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|168034871|ref|XP_001769935.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678811|gb|EDQ65265.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678841|gb|EDQ65295.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 582

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 129/372 (34%), Positives = 202/372 (54%), Gaps = 9/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  V    Y  PTPIQ + +P+ L   D+ G A+TG+GKTA+F LPM+ 
Sbjct: 136 SFEDMCLHLSIMKDVTFHNYTTPTPIQAQALPVALSGRDLLGCAETGSGKTAAFSLPMIQ 195

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
               +    R   P  L+L PTRELA Q+    + + ++      A+++GG     Q  +
Sbjct: 196 HCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFCRSAEGFRTAIVVGGTNIYEQRSE 255

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G ++++ TPGR +DH  +G   ++ +  +V+DEADRMLDMGF P I+ +   +P   
Sbjct: 256 LRAGVEIVVATPGRFIDHLQQGNSSLSRVSYVVLDEADRMLDMGFEPQIREVMRSLPKKH 315

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK------C 232
           QTLLFSATM +E++ +++ +L NP R++V   SS    +         +   +       
Sbjct: 316 QTLLFSATMPEEIEALAQEYLDNPIRVKVGRVSSPTANVTQNLEKITEKEKIESLLALLV 375

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
               Q L +       I+F  +K     +  +L +QG    A+HG   Q  R   L +F+
Sbjct: 376 DEHSQSLDTNQPPPLTIVFVERKARCDEVTDALVEQGLKATALHGGRSQSEREAALRDFR 435

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +GT  ++VA+D+A+RGLD+  V HV N D+P   E+Y+HRIGRTGRAG  G+A +   + 
Sbjct: 436 KGTTNILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGASGRATSFYTER 495

Query: 353 DIKHIDAIEKLI 364
           D+  +  I + I
Sbjct: 496 DMFLVAQIRRAI 507


>gi|302783318|ref|XP_002973432.1| hypothetical protein SELMODRAFT_52088 [Selaginella moellendorffii]
 gi|300159185|gb|EFJ25806.1| hypothetical protein SELMODRAFT_52088 [Selaginella moellendorffii]
          Length = 506

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 143/427 (33%), Positives = 222/427 (51%), Gaps = 26/427 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD+ L P +   +    +VKPTP+Q   IP+ L   D+   AQTG+GKTA+F  P++ 
Sbjct: 53  SFADVDLGPVLNENIRRCKFVKPTPVQKHAIPISLHGRDLMACAQTGSGKTAAFCFPIIA 112

Query: 62  ILEKGRA---------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            +              R   P  LIL PTREL++Q+ D  +K+     + V ++ GG   
Sbjct: 113 GILWNFPPGSRHARGSRKAFPLALILSPTRELSSQIHDEAKKFAYQTGVKVVVIYGGTSV 172

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           ++Q K+LERG D+L+ TPGR+ D   RG++ ++ +  L +DEADRMLDMGF P I+ I  
Sbjct: 173 QSQLKELERGVDILVATPGRLDDLMQRGRISLSLVRYLALDEADRMLDMGFEPQIRKIVE 232

Query: 173 LVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
                    RQT+LFSAT   E+Q+++ +FL N   + V    S+ + I       +   
Sbjct: 233 NTDMPPAGQRQTMLFSATFPREIQRLAADFLYNYIFLAVGRVGSSTDLIVQRVEYVHDVD 292

Query: 229 SKKCALLQQLLQSQD----TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
            +   +     Q  +     +   ++F   K+   +L   L + G S   IHG+  Q  R
Sbjct: 293 KRSMLMDMIHAQKPNGLNGQLPLILVFVETKRGADSLEDWLIQMGISATTIHGDRTQVER 352

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
              L +F+ G   ++VA+D+AARGLDIP V HV N+D+P+  ++Y+HRIGRTGRAG+ G 
Sbjct: 353 EHALRSFRTGVTPILVATDVAARGLDIPHVAHVINYDLPSDIDDYVHRIGRTGRAGKSGF 412

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           A      +D      +  L+++    +   L+S          A H++  +++    +  
Sbjct: 413 ATAFFTDKDTSLARPLVDLMQEANQQVPEWLASC---------AAHSNFGRSHRSGSRFG 463

Query: 405 GFDRRKK 411
           G D RKK
Sbjct: 464 GRDYRKK 470


>gi|108763335|ref|YP_634008.1| DEAD-box ATP dependent DNA helicase [Myxococcus xanthus DK 1622]
 gi|5668905|gb|AAD46062.1| DEAD-box protein [Myxococcus xanthus]
 gi|108467215|gb|ABF92400.1| ATP-dependent helicase, DEAD/DEAH-box family [Myxococcus xanthus DK
           1622]
          Length = 808

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 133/401 (33%), Positives = 208/401 (51%), Gaps = 10/401 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ LS  +  A+ + GY  PTP+Q +     ++  D+   ++TGTGKTA+F LP+L  
Sbjct: 31  FDDMNLSEPIRLALAERGYTNPTPVQARAFRPAIEGKDLIVRSKTGTGKTAAFGLPLLEK 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +     RVR    LIL PTRELA QVAD  +   K+  L +A + GG   + Q   LE G
Sbjct: 91  IPADERRVR---ALILCPTRELALQVADELKMLAKHKGLKIAAIYGGASMKQQEDALEEG 147

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+ DH NRG L ++  +  V+DEAD ML+ GF   +  I   +P TRQ LL
Sbjct: 148 TPIIVGTPGRVFDHINRGNLKLDACDHAVLDEADEMLNQGFYEEVTRILDRLPKTRQVLL 207

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  ++Q +   +  N + + ++    T E I H        + K        +  +
Sbjct: 208 FSATVPTDIQNLIARYTTNAETLLLSGDVFTVEHIHHIRYDVSDAFPKPR--NLIYVLEK 265

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  +N IIFCN + +   +   L + GF    ++G++ Q+ R +++   K G +  MVA+
Sbjct: 266 EEPQNAIIFCNTRDDTALVTAVLNRNGFDAELLNGDLPQKERERVMGKVKRGEVAFMVAT 325

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DI  + +V N+ +P     Y+HR+GRTGR G  G A  L +  ++    ++EK
Sbjct: 326 DIAARGIDISGLEYVINYSLPEDPAVYLHRVGRTGRIGNKGTAINLFSGRELATYTSLEK 385

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
               K D        +  P E + +    H R+       S
Sbjct: 386 KYGIKFDK-----REMPAPEEAMRLWTERHVREIQEAAGGS 421


>gi|118344314|ref|NP_001071981.1| zinc finger protein [Ciona intestinalis]
 gi|92081542|dbj|BAE93318.1| zinc finger protein [Ciona intestinalis]
          Length = 627

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 129/394 (32%), Positives = 194/394 (49%), Gaps = 16/394 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+     ++  +      KPTPIQ + IP+VL   D+ GIA TG+GKT  F LP+L 
Sbjct: 187 SFRDMKFPKPIIIGLKKKHIRKPTPIQTQGIPVVLSGRDMIGIAFTGSGKTLVFTLPLLM 246

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   ++       P  LI+ P+RELA Q       Y K+          +AL IGGI
Sbjct: 247 FCIEQEKKLPFLQNEGPYGLIVCPSRELARQTHQVMSYYAKHLEGGGLPSLRIALCIGGI 306

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
           P +     + +G   +I TPGR++D  N+  + +     L +DEADRM+DMGF   ++ I
Sbjct: 307 PAKETVNIIRKGCHAVIATPGRLMDMLNKKMMNLGVCRFLCLDEADRMIDMGFEEDVRTI 366

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +        
Sbjct: 367 FSYFKGQRQTLLFSATMPKKIQN----FARSALVCPVTVNVGRAGAASLDIIQEVEYVKD 422

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    ++F  +KK+V ++   L  +G    AIHG  DQ  R + +  
Sbjct: 423 EAKVVHLLNCLQKTSPPVLVFAQKKKDVDDIHEYLLLKGVEAVAIHGGKDQEERSRAVDL 482

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+     ++VA+D+A++GLD   + HV N+D+P+  ENY+HRIGRTGR+G  G A T + 
Sbjct: 483 FRTREKDVLVATDIASKGLDFEGIKHVLNYDMPDDIENYVHRIGRTGRSGCTGIATTFIN 542

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
           K  D   +  +  L+ +    +   L  L P  E
Sbjct: 543 KSCDSSTLLDLRALLIEAKQKIPEILEQLGPAEE 576


>gi|301064349|ref|ZP_07204778.1| DbpA RNA binding domain protein [delta proteobacterium NaphS2]
 gi|300441525|gb|EFK05861.1| DbpA RNA binding domain protein [delta proteobacterium NaphS2]
          Length = 595

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 135/404 (33%), Positives = 230/404 (56%), Gaps = 24/404 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           MDF  LGL  +++ AV D GY +PTPIQ K IP +L+   D+ G+AQTGTGKTA++ LP+
Sbjct: 1   MDFETLGLKARLIKAVQDLGYKEPTPIQKKAIPALLENRQDLVGLAQTGTGKTAAYGLPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
           L +++   +RV+    LIL PTREL  Q++ +  +Y +      +  + GG   E Q ++
Sbjct: 61  LQLIDFSTSRVQ---GLILCPTRELCFQISKDLARYSRYVEHAKIVAVYGGAGMEPQIRQ 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +++GA ++  TPGR+LD   RG + +++I+ +V+DEAD ML MGF   +  I +  P  +
Sbjct: 118 IKKGAQIITATPGRLLDLIKRGIVNLHDIDYVVLDEADEMLTMGFQEDLDEILAQTPPEK 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           ++ LFSATMT  + ++S+N+L++P  I V   +S A  I H     Y    K      + 
Sbjct: 178 RSWLFSATMTAPVARISQNYLKDPLEITVGRKNSGASNISH---FKYVVLEKNRYPALKR 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +         ++FC  +K    +   L + G++  ++HG++ Q  R  ++  F+E ++Q+
Sbjct: 235 IIDYHPDIFSLVFCRTRKETQAVAEKLIRDGYNAESLHGDLSQTQRDYVMGRFRERSLQI 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ D+ HV ++++P+    Y HR GRT RAG+ G +  L+   + + + 
Sbjct: 295 LVATDVAARGLDVDDISHVIHYNLPDEPGAYTHRSGRTARAGKSGASIVLMNTRENRKLA 354

Query: 359 AIEKLI----------------EKKVDWLNGDLSSLNPPLEKID 386
            +E++                 EK++  +   L  ++   E+ID
Sbjct: 355 HVEQVTGVRFRHEKVPSGRAVCEKQLYRMVEKLVDVDVNHEEID 398


>gi|300176370|emb|CBK23681.2| unnamed protein product [Blastocystis hominis]
          Length = 408

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 114/375 (30%), Positives = 190/375 (50%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF   GL  +++  + + G+ +P+P+Q +TIP +L   D+   ++ GTGKT ++V+P   
Sbjct: 35  DFEKYGLKEEIMKVLCEKGWERPSPVQSQTIPSILSGKDILARSKNGTGKTGAYVIP--- 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + +   + R+ + LIL P RELA Q +    ++GK   +      GG P      +L R
Sbjct: 92  CMNQIDPKERVIQVLILVPARELALQTSRVVREFGKALKVDSMCCFGGQPLADDLYRLRR 151

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  VL+ T  RILD   RG   +++ + LV+DEAD+ML   F   ++++ + +P   QTL
Sbjct: 152 GVHVLVGTAARILDITRRGHCDLSHCKYLVLDEADKMLSDNFRQVVEDLIAYLPAEHQTL 211

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT    ++  +  ++  P  I     +     ++           ++       L S
Sbjct: 212 LLSATFPSTVRSFAAEYMHEPVMI----NTMNELMLKGITQYYVYLEERQKVNALHTLFS 267

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   +   G+S   IH  ++Q  R K+  NF +G  + +V 
Sbjct: 268 KLEVNQSIIFCNSVARVELLAKKIIDLGYSCYYIHSRMEQDDRNKVFHNFSQGAARHLVC 327

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARGL++  V  V NFD+P  +E Y+HRIGR+GR G  G A   +  +D +    IE
Sbjct: 328 TDLLARGLNVTTVNVVINFDLPQSSETYLHRIGRSGRYGHLGLAVNFITDKDKEVFFTIE 387

Query: 362 KLIEKKVDWLNGDLS 376
           + ++ +V     ++ 
Sbjct: 388 QELDIEVQPFPKEVD 402


>gi|172060994|ref|YP_001808646.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171993511|gb|ACB64430.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 512

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 147/406 (36%), Positives = 222/406 (54%), Gaps = 28/406 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 37  SFASLGLSPEIVSALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96

Query: 62  ILEK-----------------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
              +                           V  P  L+L PTRELA QV      YGK+
Sbjct: 97  RFAQLQKTLAQQPRTPREPSQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 156

Query: 99  YNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
                   ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 157 LKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 216

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I+ I +  P +RQT+LFSAT+  ++  ++   L++P+RIE+     +   I
Sbjct: 217 MLDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTGRLLKDPERIEIQQRLESRTNI 276

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                    +  K        L   D +   IIF   K +   L   L   GF   A+HG
Sbjct: 277 AQTVHYVDDRDHKDRL--LDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHG 334

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 335 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 394

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381
           RAGR G A +LV   +   +  IE+ +     V+ + G      PP
Sbjct: 395 RAGRSGTAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRKAPP 440


>gi|73973757|ref|XP_853740.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 43
           [Canis familiaris]
          Length = 646

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 137/392 (34%), Positives = 217/392 (55%), Gaps = 5/392 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI---LEKG 66
           P+V+     AG+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT S+++P           
Sbjct: 249 PEVMENFKRAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLSYLMPGFIHLDSQPVI 308

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTRELA QV     KY     L    + GG     Q + L++G D++
Sbjct: 309 REKRNGPGMLVLTPTRELALQVEAECSKYSYK-GLKSVCIYGGGDRNGQIQDLKKGVDII 367

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + +I  LV+DEAD+MLDMGF P I  I   V   RQT++ SAT
Sbjct: 368 IATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTIMTSAT 427

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
               ++++++++L+ P  + V T    A +     +    +  K  + +Q+ L+S  +  
Sbjct: 428 WPYAVRRLAQSYLKAPMIVYVGTLDLVAVSTVKQNIIVTTEEEK-RSHIQRFLESISSQD 486

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+F ++K    +L   L  Q  SV ++HGN +Q  R + L NFK G +++++A+DLA+
Sbjct: 487 KVIVFVSRKAIADHLSSDLILQHVSVESLHGNREQCDRERALENFKTGKVRILIATDLAS 546

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLD+ D+ HV+N+D P   E Y+HR+GRTGRAGR G + TL+ + D +    +  ++E+
Sbjct: 547 RGLDVNDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGISITLITRNDWRVAGELINILER 606

Query: 367 KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
               +  +L ++    E   + +    +   P
Sbjct: 607 AHQSVPEELVAMAERYEAHRLRKETERKLGKP 638


>gi|307111894|gb|EFN60128.1| hypothetical protein CHLNCDRAFT_56582 [Chlorella variabilis]
          Length = 863

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 132/422 (31%), Positives = 203/422 (48%), Gaps = 41/422 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           ++ +  L   +  AV  AGY KP+PIQ+  IPL LQ  DV GIA+TG+GKTA+FVLPM  
Sbjct: 440 NWDEGNLPKSLRKAVERAGYKKPSPIQMAAIPLGLQFRDVIGIAETGSGKTAAFVLPMLV 499

Query: 60  -----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                  +L         P +++L PTRELA Q+ +            V  ++GG   E 
Sbjct: 500 YIEKQPPMLGNPDIEAEGPYSVVLAPTRELAQQIEEEARNLAHYTEFRVVSVVGGQSIED 559

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY-------- 166
           Q   L +G ++++ TPGR++D   R   ++N    +V+DEADRM+D+GF P         
Sbjct: 560 QGVALRKGCEIVVATPGRLVDCIERSYAVLNQCNYVVLDEADRMIDLGFEPQASAVMGVL 619

Query: 167 ------------IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA 214
                                  R T +FSATM   +++++  +L+ P  I + T     
Sbjct: 620 DAMPSSNLKPENEDEPLESNRVYRTTYMFSATMPPAVERLARKYLRRPVVITIGTAGKAT 679

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +           + ++K   L+Q L +    +  I+F N K     +   L    + V  
Sbjct: 680 DN--ITQRVIMVKENEKARSLEQELNAMGDDQRIIVFANTKSQCDAVARQLGNMDYRVTM 737

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG   Q  R + +  F+E    ++VA+D+A RG+D+P+V  V N+D+ N  E Y HRIG
Sbjct: 738 LHGGKSQDQREESIKGFREDVYNVLVATDVAGRGIDVPNVALVINYDMANTIEQYTHRIG 797

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           RTGRAGR G A T +  +D +    ++K +E+            N       +AQH  AR
Sbjct: 798 RTGRAGRKGTAVTFLTLKDSELFYDLKKFLEE------------NKAAVPSQLAQHEAAR 845

Query: 395 KN 396
           + 
Sbjct: 846 QK 847


>gi|127513380|ref|YP_001094577.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126638675|gb|ABO24318.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 460

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 144/467 (30%), Positives = 219/467 (46%), Gaps = 28/467 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F+D  L  +++ ++   G   PT IQ ++IP+ L   D+   ++TG+GKT +F+LP M
Sbjct: 14  LQFSDFSLDKRLLTSLEHMGIDTPTEIQTQSIPVGLSGRDLMASSKTGSGKTLAFLLPAM 73

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++       R PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 74  QRVIATKALSKRDPRVLILLPTRELATQVYSQLRLLVANTQYKAIKILGGENFNDQAKAL 133

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH  +  L +N +E+L++DEADRMLD+GF   ++ I       R+
Sbjct: 134 ARDPHFVVATPGRLADHLAQRHLYLNGLELLILDEADRMLDLGFAEQLRAINQAADHKRR 193

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  Q          +   V   +S  E  +                L   L
Sbjct: 194 QTLMFSATLDHGQINEIAAELLKEPEHVAIGASHVENQDIAQKIYLCDNLSHKEQLLTRL 253

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  K  IIF   + +   L   L +QGFS  ++ G + Q +R +I+  F  G  Q++
Sbjct: 254 LQLEPHKQVIIFTATRGDTDRLAGVLAEQGFSTSSLSGELKQAARNQIMDQFSRGQQQIL 313

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+ +V  V NFD+P  AE YIHRIGRTGRAG  G A +LV  +D  +   
Sbjct: 314 VTTDVASRGLDLLNVSLVINFDMPKFAEEYIHRIGRTGRAGAKGDAISLVGPKDWVNFKQ 373

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR---RKKNYSSQ 416
           ++  + K  ++   +L  L P  + +         K+ P  +K  G  +   + K   + 
Sbjct: 374 VQNFLRKSFEF--SELEELAPKFKGL---------KDKPSQEKRLGKQQAKPKAKTAKAA 422

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
            S  P K  +K      D+           G+ P  ML K + KL D
Sbjct: 423 SSTKPTKPRDKRFITGVDV-----------GDAP--MLRKPKAKLQD 456


>gi|56201870|dbj|BAD73320.1| putative ethylene-responsive RNA helicase [Oryza sativa Japonica
           Group]
          Length = 521

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 125/367 (34%), Positives = 191/367 (52%), Gaps = 29/367 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+G    V+  +  AG+V+PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP + 
Sbjct: 92  EFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIV 151

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA Q+     K+G                       
Sbjct: 152 HVNAQPILAPGDGPIVLVLAPTRELAVQIQQEATKFGV---------------------- 189

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               +++I TPGR++D        +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 190 ----EIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQ 245

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL +SAT   E+++++ NFL +P ++ + +    A       V   ++  K    L  LL
Sbjct: 246 TLYWSATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILSESQKY-NKLVNLL 304

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +IF + KK    +   L   G+   +IHG+  Q  R  +LS FK G   +M
Sbjct: 305 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIM 364

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD+ DV +V N+D P   E+Y+HRIGRTGRAG  G A+T     + +    
Sbjct: 365 TATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKD 424

Query: 360 IEKLIEK 366
           +  ++E+
Sbjct: 425 LINILEE 431


>gi|149192500|ref|ZP_01870684.1| RhlE [Vibrio shilonii AK1]
 gi|148833665|gb|EDL50718.1| RhlE [Vibrio shilonii AK1]
          Length = 397

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 146/403 (36%), Positives = 233/403 (57%), Gaps = 7/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  ++ A+ + GY KPT IQ K IP+VL+  ++   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSKLGLSQPLLDAIKEVGYQKPTTIQTKAIPIVLKGSNLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G+  R +  R +IL PTRELA QV  + E Y +  ++    + GG+ +  Q + L
Sbjct: 61  ERLSAGQTERKKRARAIILTPTRELALQVNQSIEAYAQFTSIKSMAMFGGVDYAPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR++D + +  +  + +E LV+DEAD+MLDMGFI  I  I + VP   Q
Sbjct: 121 IDGVDIVVATPGRLIDLYGQRAIHFDEVETLVLDEADKMLDMGFIEAINKIIARVPEDAQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT+++ ++ ++++ + NP+ I +   S++   I+   V                 
Sbjct: 181 SLLFSATLSNPVRDLAKSAIDNPEEIAITKHSASKSNIKQWIVTVDKDMKSSLLSHLLQQ 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  +IF   K     L   LEK+G +  A H   +Q+ R +++ +FK G IQ +
Sbjct: 241 NQW---KQALIFIETKHGAAKLVSQLEKRGIAAEAFHSGRNQKVRQQLIESFKAGEIQYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI ++  V N+D+P  A+ Y+HRIGRTGRA   G+A +LV+K++ K++  
Sbjct: 298 VATGVAARGIDIENLPVVINYDLPYPADEYVHRIGRTGRADAAGEALSLVSKDNFKNLCM 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           IE  +   ++ +  +      P + + I+  N+  K+    Q+
Sbjct: 358 IESRLGHLLERVEIE---GFVPRKPVPISILNYVPKHKRDEQR 397


>gi|157138330|ref|XP_001657248.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108869525|gb|EAT33750.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 1029

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 135/434 (31%), Positives = 225/434 (51%), Gaps = 15/434 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+S K    +   G+ KPTPIQ + IP ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 369 TWAHCGVSKKEFDVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 428

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P ++I+ PTREL  Q+  + +K+ K+ NL    + GG     Q  +L
Sbjct: 429 HILDQPPLEDGDGPISIIMTPTRELCMQIGKDIKKFAKSLNLRAVCVYGGTGISEQIAEL 488

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM D+GF P +  I   +  
Sbjct: 489 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDLGFEPQVMRIIDNIRP 548

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT   +++ ++   L+ P  I++   S   +           +   K   L 
Sbjct: 549 DRQTVMFSATFPRQMEALARRILKKPIEIQIGGRSVVCKD--VEQHVVVLEEDAKFFKLL 606

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL     + + I+F ++++N   L   L K  +   ++HG IDQ  R   + +FK+G +
Sbjct: 607 ELLGLYQELGSIIVFVDKQENADILLKDLMKASYPCLSLHGGIDQFDRDSTIIDFKQGRV 666

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +L++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A+T +  E  ++
Sbjct: 667 KLLIATSVAARGLDVKQLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAWTFLTHEQGRY 726

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I + +E     +  DL SL    +    AQ    +K +     S      K     +
Sbjct: 727 SGDIIRALELSGGTVPDDLRSL---WDTYKAAQEAEGKKVHTGGGFSG-----KGFKFDE 778

Query: 417 KSHIPLKESEKISK 430
           +    + E +K+ K
Sbjct: 779 QEAAAVNERKKLQK 792


>gi|86157651|ref|YP_464436.1| DEAD/DEAH box helicase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774162|gb|ABC80999.1| DEAD/DEAH box helicase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 628

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 133/391 (34%), Positives = 213/391 (54%), Gaps = 10/391 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+GLS  V  AV + GY KPTP+Q  T   +    DV   ++TGTGKTA+F +P+L 
Sbjct: 21  SFDDMGLSEPVRRAVAEHGYTKPTPVQSATFRPIRDGKDVIVRSKTGTGKTAAFTIPILE 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  GR +   P  L++ PTRELA QVA+      K+ +L V  + GG     Q  KL+ 
Sbjct: 81  RIPDGRRK---PSALVMCPTRELAIQVAEEVTALAKHRDLGVVTIYGGASMGDQLDKLKA 137

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA++++ TPGRI DH  R  L +  + +  +DEAD ML+MGF   +  I   +P   Q L
Sbjct: 138 GAEIVVGTPGRIYDHIRRKTLRLEEVMVCCLDEADEMLNMGFFEEVTRILDHLPADVQQL 197

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  +++++  ++L +P+ I ++      E I +    T   Y K        +  
Sbjct: 198 LFSATVPADIEQIIHDYLTDPETILLSGDEYKVENINNVMYPTVDAYPKPR--NLLYMIG 255

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  IIFCN + +   +   L + G+    ++G++ Q+ R ++++  K G ++ MVA
Sbjct: 256 MEEPEAAIIFCNTRSDTSLVTAVLNRNGYDAELLNGDLPQKERERVMAKVKRGEVRFMVA 315

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI D+ HV N+ +P     ++HR+GRTGR G+ G + +LV+  D+  + A++
Sbjct: 316 TDIAARGIDISDLSHVINYSLPEDPAVFLHRVGRTGRIGKKGTSLSLVSGGDLHTLTALQ 375

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           K  E   +       +L  P E   I    H
Sbjct: 376 KKYEIVFEK-----KALPTPEEARKIWTDRH 401


>gi|332233583|ref|XP_003265983.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 2
           [Nomascus leucogenys]
          Length = 577

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 128/422 (30%), Positives = 213/422 (50%), Gaps = 18/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 141 LTFEEADLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 200

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             + +          ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 201 AHMMRDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGH 260

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 261 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 320

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       V    Q+SK
Sbjct: 321 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSK 380

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 381 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 438

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 439 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 498

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
                 +++  +L +  V  L      +   LE+I  + +      +         D RK
Sbjct: 499 ------LESDNQLAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGSVFASVDTRK 552

Query: 411 KN 412
             
Sbjct: 553 GK 554


>gi|332233581|ref|XP_003265982.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 1
           [Nomascus leucogenys]
          Length = 693

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 128/422 (30%), Positives = 213/422 (50%), Gaps = 18/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 257 LTFEEADLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 316

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             + +          ++ P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 317 AHMMRDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGH 376

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I+ LV+DEADRMLDMGF P ++      
Sbjct: 377 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 436

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL++            A       V    Q+SK
Sbjct: 437 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSK 496

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 497 REKLVE--ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 554

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 555 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 614

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
                 +++  +L +  V  L      +   LE+I  + +      +         D RK
Sbjct: 615 ------LESDNQLAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGSVFASVDTRK 668

Query: 411 KN 412
             
Sbjct: 669 GK 670


>gi|195480298|ref|XP_002101215.1| GE17497 [Drosophila yakuba]
 gi|194188739|gb|EDX02323.1| GE17497 [Drosophila yakuba]
          Length = 962

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 132/439 (30%), Positives = 216/439 (49%), Gaps = 25/439 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   V+  +   G+ KPT IQ +  P+ L   D+ GIAQTG+GKT +++LP +
Sbjct: 239 VSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAI 298

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQN 116
             +       R   P  L+L PTRELA Q+      YG           + GG     Q 
Sbjct: 299 VHIGNQPPILRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQA 358

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L+RG +V+I TPGR++D        +     LV+DEADRMLDMGF P I+ I   +  
Sbjct: 359 RDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 418

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK----- 231
            RQ +++SAT   E+Q ++ +FL +  +I + + + +A       V    +  K      
Sbjct: 419 DRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEMEKPQRLVR 478

Query: 232 -CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
               +     S +     IIF   K  V ++   +  +G++  +IHG+  Q  R  +L +
Sbjct: 479 LLNEIAPTKNSANNGNKIIIFVETKIKVEDILQIIRTEGYTATSIHGDKTQNERDSVLKD 538

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   +++A+D+A+RGLD+ D+ +V N+D PN +ENY+HRIGRTGR  + G A+T   
Sbjct: 539 FRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFT 598

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ---HNHARKNNPIPQKSTGFD 407
            ++ K    +  ++E+             P    +D+A+    +   + N     + G D
Sbjct: 599 PDNAKQARELISVLEEAGQ---------TPSQALLDLARSMPSSGGYRGNKRWNNNGGGD 649

Query: 408 RRKKNYSS---QKSHIPLK 423
           R    ++    Q++  PL 
Sbjct: 650 RNTGGHNGVYQQRNSNPLN 668


>gi|168053931|ref|XP_001779387.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669185|gb|EDQ55777.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 741

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 137/380 (36%), Positives = 211/380 (55%), Gaps = 4/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG    ++ A+   GY +PTPIQ ++ P+VL   D+ GIA+TG+GKTA+FVLPM+ 
Sbjct: 235 TFEDLGFDASLMGAISKQGYERPTPIQCQSCPIVLSGRDLIGIAKTGSGKTAAFVLPMMV 294

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       +   P  +I  PTRELA Q+    +K+ K + + ++ + GG+    Q K+L
Sbjct: 295 HIMDQPELGKGEGPIGVICAPTRELAQQIYSEAKKFAKVHGIRISGVYGGMSKFEQFKEL 354

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G +V++ TPGR++D      L M+    LV+DEADRM D+GF P I++I   +   RQ
Sbjct: 355 KAGCEVVVATPGRLIDMIKMKALSMHRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 414

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   +++++   L +P R+ V    S  E I        +   K   LL +L 
Sbjct: 415 TLLFSATMPKRVERLAREILTDPIRVTVGEIGSANEDITQVVTVLPSDAEKTPWLLDRLQ 474

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     +    + + V  L   + + GF V A+HG+ DQ +RM++L  FK G   ++
Sbjct: 475 PFVDDGDVLVFASTKLR-VEELEGKISEAGFKVAALHGDKDQATRMEVLQKFKNGIYHIL 533

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIKHID 358
           VA+D+AARGLDI  +  V N D+    ++++HRIGRTGRAG + G A TLV  ++ +   
Sbjct: 534 VATDVAARGLDIKSIKTVVNVDIARDMDSHVHRIGRTGRAGDKDGVAHTLVTGKEARFAG 593

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +   +      +  +L  L
Sbjct: 594 ELVNSLIAAGQNVPTELMDL 613


>gi|195146268|ref|XP_002014109.1| GL24500 [Drosophila persimilis]
 gi|194103052|gb|EDW25095.1| GL24500 [Drosophila persimilis]
          Length = 799

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 139/429 (32%), Positives = 214/429 (49%), Gaps = 25/429 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L+  +   V  A Y KPTP+Q   IP+++   D+   AQTG+GKTA+F++P+L 
Sbjct: 291 TFDDVQLTEIIRNNVSLARYDKPTPVQKHAIPIIISGRDLMACAQTGSGKTAAFLVPILN 350

Query: 62  ILEKGRA------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            + +               R + P  L+L PT +LA Q+ +  +K+     +  A+L GG
Sbjct: 351 QMYEHGMSAPPQNNRQYSRRKQYPSGLVLAPTHKLATQIFEEAKKFAYRSRMRPAVLYGG 410

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q ++L+RG  +++ TPGR+ D   RGK+ + NI  LV+DEADRMLDMGF P I+ 
Sbjct: 411 NNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRR 470

Query: 170 ITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I   +           +FSAT   ++Q+++ +FL N   + V    ST+E I    +  Y
Sbjct: 471 IVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVY 530

Query: 226 AQYSKKCALLQQLLQSQDTMKN----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
            Q  +   L            +     +IF   KK   +L   L +    V +IHG+  Q
Sbjct: 531 EQDKRSYLLDLLSSIRDGPEYSKDSLTLIFVETKKGADSLEEFLYQCSHPVTSIHGDRTQ 590

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           + R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P+  E Y+HRIGRTGR G 
Sbjct: 591 KEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGN 650

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            G A +   +++      + +L+ +    +   L  L       D       R+  P  +
Sbjct: 651 LGVATSFFNEKNRNICSDLLELLIETKQEIPNFLEDLLSS----DRGHGGAKRRGGPGAR 706

Query: 402 -KSTGFDRR 409
              +GF  R
Sbjct: 707 YGGSGFGSR 715


>gi|328710486|ref|XP_001948002.2| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
           [Acyrthosiphon pisum]
          Length = 546

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 102/507 (20%), Positives = 194/507 (38%), Gaps = 69/507 (13%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F ++ +  +++ A+ + G+ +PT +Q   IPL+L+  D+   A+TG+GKTA+FV+P++
Sbjct: 5   INFHEMNIDDRILKAIANQGWTEPTLVQEHGIPLLLEGKDMLVRARTGSGKTAAFVIPVI 64

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEK--YGKNYNLTVALLIGGIPFEAQ 115
                 +   A     + LIL P++EL  Q+  N  +     + ++    +   I  + Q
Sbjct: 65  QKILEFKDINADTYCTQALILAPSKELCNQIFKNILQLTIKCSRDVKCVDISDQIDMKEQ 124

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L    DV++ TP R L H     + +  ++ LV+DEAD +   GF   I+ +   +P
Sbjct: 125 QPLLNIPPDVIVATPARALLHLQGKNMTLKKLQTLVVDEADLVFSFGFEEEIKEVIKFLP 184

Query: 176 FTRQTLLFSATMTDELQK--------------VSENFLQNPKRIEVNTPSSTAETIEHCF 221
            T Q +L SAT+++++                   +     +       +   +     +
Sbjct: 185 KTYQAVLASATLSEDVMALKKLLLRNAVILKLQEPDLAPLSQLTHYKLNAEEEDKAVILY 244

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
                +  K   ++      +       +        V                  +   
Sbjct: 245 CIFKLKLVKGKTIVFVNSVDKCYKLKLFLEQFGVHTCVLNSELPASCRCHTINQFNDNIY 304

Query: 282 RSRMKILSNFKEGTIQLMVASDLAA---------RGLDIPDVGHVFNFDVPNRAENYIHR 332
              +     F +   ++   S             RG+D   V  V NFD P    +YIHR
Sbjct: 305 DIILASDEKFLDEEHEITSTSTNKRKHDKEFSIARGIDFQFVSIVINFDFPQDIYSYIHR 364

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           +GRT R    G A + +  +++  +  +E  I++ +   N      N  LE+++      
Sbjct: 365 VGRTARGKNKGTAISFLNIKELNLLKDVEDYIKQGISEENDIFQDFNFKLEEVE------ 418

Query: 393 ARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESE---------KISKLQQDIQENDADSL 443
                       GF  R K+     + I ++E+             KL++  QEN  D L
Sbjct: 419 ------------GFRYRAKDAWRAVTKIAVREARLKEIKSEMLNSKKLKRYFQENPRDLL 466

Query: 444 GFR--------------GNMPAFMLPK 456
             R               ++P +M+P 
Sbjct: 467 SLRHDKALHTVKLQDHMSDVPDYMVPT 493


>gi|322494127|emb|CBZ29424.1| putative ATP-dependent RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 622

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 121/393 (30%), Positives = 196/393 (49%), Gaps = 16/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA + L+P +   V    Y KPTP+Q   IP VL   D+   AQTG+GKTA++++P + 
Sbjct: 142 SFATMALAPALAENVNRCRYQKPTPVQKYGIPCVLNGSDLMACAQTGSGKTAAYLIPAIN 201

Query: 62  ILEKGRARVRMPRTL-------ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +         P          +L PTREL+ Q+ +   K+     +   ++ GG     
Sbjct: 202 FMLVNNLNRSKPTNSQSAPSALVLSPTRELSIQIYEEGRKFTYRTGIRCVVVYGGADPRH 261

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  +L RG  +L+ TPGR+ D F RG    +++  LV+DEADRMLDMGF P I+ I    
Sbjct: 262 QIHELTRGCGLLVATPGRLSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRAIVQGP 321

Query: 175 PFTRQTLL------FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
                         +SAT   E+Q+++  FL +   ++V    ST E I           
Sbjct: 322 DSDMPPPGERQTLLYSATFPKEIQQMAREFLYHHHFLQVGRVGSTTENITQDVRWVEDVD 381

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            +        +  +   +  ++F  +K++   L   L +      +IHG+  QR R + L
Sbjct: 382 KRG---CLLEVLKEHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEAL 438

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             FK G  +++VA+D+A+RGLDIP+V  V  +D+P+  ++Y+HRIGRTGRAG+ G A + 
Sbjct: 439 DIFKSGVCRVLVATDVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGRTGRAGKRGTALSF 498

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
              ++   +D +  L+ +    +  ++ +L   
Sbjct: 499 FNDKNRNIVDDLIPLLRETNQTVLPEVQALAKK 531


>gi|195109284|ref|XP_001999217.1| GI23184 [Drosophila mojavensis]
 gi|193915811|gb|EDW14678.1| GI23184 [Drosophila mojavensis]
          Length = 724

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 132/382 (34%), Positives = 208/382 (54%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF++  L   V+  +   GY  PTPIQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 277 DFSEAYLPDYVLKEIRRQGYKAPTPIQAQGWPIAMSGANFVGIAKTGSGKTLGYILPAIV 336

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   +   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 337 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 396

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 397 QRGCEIVIATPGRLIDFLSAGATNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 456

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL---Q 236
           TL++SAT   E+++++E+FL N  +I + +   +A       V    ++SK+  L     
Sbjct: 457 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEDKLKSLLS 516

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +  + +     IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G  
Sbjct: 517 DIYDTSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 576

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + K 
Sbjct: 577 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 636

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
             A+  ++ +    +N  L ++
Sbjct: 637 AKALVDVLREANQEINPALENM 658


>gi|78066825|ref|YP_369594.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
 gi|77967570|gb|ABB08950.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
          Length = 516

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 143/392 (36%), Positives = 218/392 (55%), Gaps = 26/392 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 37  NFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96

Query: 62  ILEK-----------------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
              +                           V  P  L+L PTRELA QV      YGK+
Sbjct: 97  RFAQLQKTQAQQPRAPREPNQGDRRARRPQPVARPGLLVLTPTRELAMQVTTAATTYGKH 156

Query: 99  YNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
                   ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 157 LKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 216

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I+ I +  P +RQT+LFSAT+  ++  ++   L++P+RIE+     +   I
Sbjct: 217 MLDMGFIDDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANI 276

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                    +  K        L   D +   IIF   K +   L   L   GF   A+HG
Sbjct: 277 AQTVHYVDDRDHKDRL--LDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHG 334

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 335 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 394

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           RAGR G A +LV   +   +  IE+ +   + 
Sbjct: 395 RAGRSGTAVSLVHHAEQGALKRIERFVRAPLP 426


>gi|329297696|ref|ZP_08255032.1| ATP-dependent RNA helicase SrmB [Plautia stali symbiont]
          Length = 442

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 130/367 (35%), Positives = 201/367 (54%), Gaps = 9/367 (2%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILEKGRARVRMP 73
           A+ D G+ +PT IQ + IP  L+  DV G A TGTGKTA+++LP +  +L+  R +   P
Sbjct: 18  ALQDKGFTRPTAIQAEAIPAALEGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R LIL PTRELA QVAD   +  K+ +L +A + GG+ +    +      D+++ T GR+
Sbjct: 78  RILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT-MTDELQ 192
           L +          +E L++DEADRMLDMGF   I+ I     + +QTLLFSAT   D ++
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQTLLFSATLEGDNIK 197

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
             +E  L +P  IE +   S  + I+  +        K    L   L  Q  +K  I+F 
Sbjct: 198 DFAERLLNDPVAIEADPSKSERKKIQQWYYRADNLEHK--IKLLVHLLKQPEVKRAIVFV 255

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
            +++ +  L   + + G     + G + Q +R + +    +G + ++VA+D+AARG+DI 
Sbjct: 256 RKRERLHELVTWMHEAGLRSSYLEGEMVQANRNEAIKRLNDGRVNVLVATDVAARGIDID 315

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK----- 367
           +V HV N+D+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  I + + +      
Sbjct: 316 NVTHVINYDLPRTADVYLHRIGRTGRAGRKGTAISLVEAHDHPLLGKISRYVNEPLKSRV 375

Query: 368 VDWLNGD 374
           +D L  +
Sbjct: 376 IDELRPE 382


>gi|322795050|gb|EFZ17898.1| hypothetical protein SINV_07122 [Solenopsis invicta]
          Length = 725

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 144/446 (32%), Positives = 230/446 (51%), Gaps = 20/446 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++ A+    +V PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP+L 
Sbjct: 160 TFYQMNLSRPLLKAITAMNFVHPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPVLE 219

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L            + +L PTREL  QV    ++  +   + V L +GG+  + Q   L 
Sbjct: 220 RLLYRPLDGPAISRVLVLVPTRELGVQVYQVTKQLAQFTTVEVGLSVGGLDVKIQEGVLR 279

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  D++I TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I      TRQ
Sbjct: 280 KNPDIVIATPGRLIDHLRNAPTFSLDSIEVLILDEADRMLDEYFAEQMKYIVKQCSRTRQ 339

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMT+E++ ++   L  P +I V++    A  +   F+    +       +   L
Sbjct: 340 TILFSATMTEEVKDLAAVSLDKPIKIFVDSNQDVAFNLRQEFIRIRKEREGDREAILAAL 399

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + ++F   KK    L   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 400 VCRTFHDHAMVFVQTKKQAHRLHILLGLLGVKVGELHGNLTQPQRLENLRKFKDEEIDIL 459

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  V  V NF +P   ++YIHR+GRT RAGR G + +L  +++   +  
Sbjct: 460 LATDVAARGLDISGVKTVINFVMPATLQHYIHRVGRTARAGRGGVSVSLAGEQERSLVKE 519

Query: 360 IEKLIEKK----------VDWLNGDLSSLNPPLEKI---DIAQHNHARKNNPIPQ----- 401
           + K  + +          ++  N  L SL   +EKI   + ++   A+  N   +     
Sbjct: 520 VIKQAKNQVKNRIIPPDIIEKYNKKLQSLESDVEKILQEEKSEKELAKVENEANRVEKLL 579

Query: 402 KSTGFDRRKKNYSSQKSHIPLKESEK 427
           K      ++KN+   K  +  K+ EK
Sbjct: 580 KVEDDKDKRKNFRLTKKQVKSKKHEK 605


>gi|253574214|ref|ZP_04851556.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251846691|gb|EES74697.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 375

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 138/376 (36%), Positives = 214/376 (56%), Gaps = 6/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L +SP +V  +   G V PTP+Q   IP++    D    AQTGTGKT +F+LP+L 
Sbjct: 4   TFESLNVSPLLVRKLQGQGIVNPTPVQAAAIPVLQSGEDAIVQAQTGTGKTLAFLLPILE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            +   R   +    LI+ PTRELA Q+     K  +       L   G    E Q +KL+
Sbjct: 64  KIRPERPEAQA---LIITPTRELAIQITAEARKLAEAMEGLSVLAAYGGQDVERQLRKLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA ++I TPGR+LDH  RG L +  +  LV+DEAD+ML MGF+  ++ I SLVP +RQT
Sbjct: 121 NGAQLVIGTPGRLLDHLRRGSLTLGAVRYLVLDEADQMLHMGFLAEVEEILSLVPRSRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++++++ ++  P+ I++   S          +      +K+ AL++    
Sbjct: 181 MLFSATMPGNVKRLAKTYMDKPRDIQIAETSRVTLDSIRQILVECTDRTKQSALIE--SI 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IFC  K+    L  +L+  GF    +HG++ Q  R +++  F+   ++L+V
Sbjct: 239 RSQRPYLAVIFCRTKRRASTLNEALQAAGFQSDELHGDLSQAKREQVMRAFRSAKLELLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HVFN+D+P+  ++YIHRIGRTGRAG  G A T  A +D++ +  I
Sbjct: 299 ATDVAARGIDVEGVTHVFNYDIPHDVDSYIHRIGRTGRAGEKGVAVTFAAPKDMEALRLI 358

Query: 361 EKLIEKKVDWLNGDLS 376
           E+ I +K++    + S
Sbjct: 359 ERGIGRKLERQRYEKS 374


>gi|225559706|gb|EEH07988.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
            capsulatus G186AR]
          Length = 1201

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 137/482 (28%), Positives = 223/482 (46%), Gaps = 19/482 (3%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
             ++  GL  + +  +    Y  PT IQ + IP ++   DV G+A+TG+GKT +F+LPM  
Sbjct: 567  KWSQCGLGVQTLDVIRKLNYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFR 626

Query: 62   ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   R    +  P  LI+ PTRELA Q+    + + K  NL      GG P + Q  +L
Sbjct: 627  HIMDQRPLENMEGPIGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAEL 686

Query: 120  ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +RGA++++CTPGR++D           +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 687  KRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRILGNVRP 746

Query: 177  TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC---A 233
             RQT+LFSAT    ++ ++   L  P  I V   S  A  I                   
Sbjct: 747  QRQTVLFSATFPRNMEALARKTLAKPVEIIVGGKSVVAPEITQIVEVRNQDTKFVRLLAL 806

Query: 234  LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L +     ++     +IF ++++    L   L  +G+   +IHG  DQ  R   + +FK 
Sbjct: 807  LGELYADDKNEDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIDDFKA 866

Query: 294  GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 867  GVFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 926

Query: 354  IKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARK-------NNPIPQKSTG 405
             ++   I K +++    +   +  L N  +EK+   +   +              ++   
Sbjct: 927  ERYSVDISKALKQSGQPVPEPVQKLVNSFMEKVKAGKEKASGSGFGGKGLERLDQERDAA 986

Query: 406  FDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR---GKLN 462
             +R +K Y + +     +  EK  K      +  +         P   +PK     GK+ 
Sbjct: 987  RNRERKTYKTGEEGEEEEREEKKDKKDDLFSKAASAVQATATPAPTPSVPKGIDLDGKIT 1046

Query: 463  DK 464
              
Sbjct: 1047 VH 1048


>gi|329769092|ref|ZP_08260513.1| hypothetical protein HMPREF0433_00277 [Gemella sanguinis M325]
 gi|328839438|gb|EGF89015.1| hypothetical protein HMPREF0433_00277 [Gemella sanguinis M325]
          Length = 486

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 136/391 (34%), Positives = 216/391 (55%), Gaps = 13/391 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+S +VV ++    +  PT IQ +TIP V    D+   AQTG+GKT +F +P++ 
Sbjct: 3   TFEELGVSREVVESLSKMNFQSPTGIQTETIPYVFSGIDILAQAQTGSGKTGAFGIPIVD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I++    R    ++L+L PTRELA QV +      +   L V+++ GG   E Q + L++
Sbjct: 63  IVK----RSEDLQSLVLAPTRELAQQVGEQLRLMARAKGLKVSIIFGGTSIERQIQDLKK 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR++DH NR  L ++ +  LV+DEAD ML+MGFI  ++ I S +    QTL
Sbjct: 119 RPQIVVGTPGRVIDHINRRTLKLDKLTHLVLDEADEMLNMGFIEDVRFILSKITSNHQTL 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   + ++S++F+++ K I      S  +               +          
Sbjct: 179 LFSATMPKTIMELSKDFMKDYKLI---KTMSDEDLNPDIKEYATIARENEKLETLVGFLD 235

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K+ V  L  +L  +G+    +HG+I Q  R++IL  FK  ++Q++VA
Sbjct: 236 VQNPNLAIVFGRTKRRVDELSSALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQILVA 295

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI DV HV+NFD+P   E+Y HRIGRTGRAG+ G A T +   ++ ++  IE
Sbjct: 296 TDVAARGIDISDVTHVYNFDIPQDTESYTHRIGRTGRAGKSGVAVTFLNPIEMPYLKDIE 355

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
               +++  L           E++  A+HN 
Sbjct: 356 NSRGERMKMLRPYTK------EEVKKARHNR 380


>gi|34539956|ref|NP_904435.1| DEAD-box ATP dependent DNA helicase [Porphyromonas gingivalis W83]
 gi|34396267|gb|AAQ65334.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Porphyromonas
           gingivalis W83]
          Length = 604

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 131/397 (32%), Positives = 225/397 (56%), Gaps = 17/397 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG++   + A+ + G+ +P P+Q + IP +L +  D+  +AQTGTGKTA+F LP+L
Sbjct: 3   TFEELGIAKPFLKAIAELGFEQPMPVQEEVIPYLLGEDIDLIALAQTGTGKTAAFGLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++    R   P+ L+L PTREL  Q+AD+   Y K  +    L + G  P +AQ + L
Sbjct: 63  QKIDLSGGR---PQALVLCPTRELCLQIADDLNSYSKYLSDVHILPVYGGTPIDAQIRAL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG  +++ TPGR+LD   R  + +++I  +V+DEAD ML+MGF   ++ I + +P  R 
Sbjct: 120 RRGVQIVVATPGRLLDLMRREAVSLSDIHTVVLDEADEMLNMGFAEDLEQILADIPSERH 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  E+ K++ +++++PK I +    +  E   +     Y   ++   L  + +
Sbjct: 180 LLLFSATMPKEISKIATSYMKDPKEIVIG---NKNEGNANIKHLYYMVSARHKYLALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GI+FC  +K    +   L + G++  ++HG++ Q  R  ++  F+   +QL+
Sbjct: 237 ADYYPNIYGIVFCRTRKETQEIADQLIQDGYNADSLHGDLSQAQRDYVMQKFRVRNLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV +F +P+  E+Y HR GRT RAG+ G +  +   ++   I  
Sbjct: 297 VATDVAARGLDVNDLTHVIHFGLPDDVESYTHRSGRTARAGKTGLSIAICHVKEKGKIKN 356

Query: 360 IEKLIEKKVDW---------LNGDLSSLNPPLEKIDI 387
           IE+ ++K+++              L +L   +E++DI
Sbjct: 357 IERTMQKQIERARIPSGAEICEKQLFNLADRIERVDI 393


>gi|311276036|ref|XP_003135023.1| PREDICTED: probable ATP-dependent RNA helicase DDX53-like [Sus
           scrofa]
          Length = 630

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 142/409 (34%), Positives = 225/409 (55%), Gaps = 7/409 (1%)

Query: 2   DFAD-LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F D  G  P+++ ++  AG+ KPTPIQ +  P+VLQ  D+ GIAQTGTGKT S+++P  
Sbjct: 224 KFEDAFGPYPELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGF 283

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                    R +   P  L+L PTRELA QV     KY     L    + GG   + Q +
Sbjct: 284 IHLNSQPVSRGKRNGPGMLVLTPTRELALQVGAECSKYSYK-GLKSVCIYGGGNRKGQIQ 342

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            + +G D++I TPGR+ D      + + +I  LV+DEAD+MLD+GF   I  I   V   
Sbjct: 343 DIMKGVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPD 402

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++ SAT  D +++++ ++L+ P  + V T    A       +    +  K  +L Q+
Sbjct: 403 RQTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEK-RSLFQE 461

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            LQS       I+F ++K    +L   L  QG  V ++HG+ +Q  R + L +FK G ++
Sbjct: 462 FLQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVK 521

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+DLA+RGLD+ DV HVFN++ P   E Y+HR+GRTGRAG+ G++ TL+ ++D K  
Sbjct: 522 ILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVA 581

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
             + +++++    +  DL S+     K+   +    +K     +K   F
Sbjct: 582 GELIEILQRANQSIPEDLLSMAEQY-KLHKQEKETGKKPRTPQEKFREF 629


>gi|312883216|ref|ZP_07742944.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369079|gb|EFP96603.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 399

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 142/383 (37%), Positives = 213/383 (55%), Gaps = 4/383 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL   ++ A+ + GY KPT IQ + IP  L   D+   AQTGTGKTASFVLP+L
Sbjct: 1   MSFSKLGLEQPLIDAIHELGYQKPTHIQTQAIPSALSGQDLLAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G+  + +  R LIL PTRELA QV +  + YGK  +L    L GG+  +AQ + L
Sbjct: 61  QKLNAGQTQKKKRARALILTPTRELALQVEEKIQSYGKYLSLKSIALYGGVDDKAQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR+LD + +  +    IEILV+DEAD+MLDMGFI  I  I   +P   Q
Sbjct: 121 IDGIDIVVATPGRLLDLYGKRAIYFEEIEILVLDEADKMLDMGFIEGINKILDRLPRDIQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++++++ +++  + NP  I +    ++ + IE   +                 
Sbjct: 181 NLLFSATLSNKVRDLAKTAVYNPYEISIAANQASKKNIEQWLITVDKDKKSALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     +IF   K     L   LEK+G    A H    Q  R K+L +FK G I+ +
Sbjct: 238 IQHNNWDQALIFIETKHGAAKLASQLEKRGIYAEAFHSGRSQAIRSKLLDDFKSGEIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ + ARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA  +G+A + V+K++ K++  
Sbjct: 298 IATGVGARGIDIEGLSRVINYDLPFPADEYVHRIGRTGRADANGEAISFVSKDNFKNLCM 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPL 382
           IE  +   ++    +      P+
Sbjct: 358 IESRLGHLIERREIEGFQPRKPV 380


>gi|299769392|ref|YP_003731418.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. DR1]
 gi|298699480|gb|ADI90045.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. DR1]
          Length = 383

 Score =  150 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 201/377 (53%), Gaps = 6/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++  A+   G+ + TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 5   FETLNLHPQLKKAIDALGFKQMTPIQQKVLKYTLGGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 63  LEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L     + +     PR LIL PTRELA Q+  + +   K  +L +  L+GG+ F+ Q K+
Sbjct: 65  LLHNPIQEQRFRGEPRALILAPTRELALQIESDAKLLTKFSDLHIVTLLGGVDFDKQKKQ 124

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P  
Sbjct: 125 LDANFVDIIVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRK 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q      + T     V     Q              +T        Y    +    L Q
Sbjct: 185 EQRQTLMFSAT-FSYDVLNLARQWLFEPITVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQ 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  ++ +   +IF N++  V  L   L++ G+ V  + G I Q  R+K+L  FK+G   
Sbjct: 244 DILREEPIDKVMIFANRRDQVRRLYDHLKRDGYRVGMLSGEIAQDKRLKMLEQFKQGKNN 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +M+A+D+A RG+ +  V HV N+ +P ++++Y+HRIGRTGRAG  G + + ++++D  ++
Sbjct: 304 VMIATDVAGRGIHVDGVSHVINYTLPEQSDDYVHRIGRTGRAGSQGVSISFLSEDDAFYL 363

Query: 358 DAIEKLIEKKVDWLNGD 374
             IEK I KK+     D
Sbjct: 364 PEIEKAIGKKLPLTRLD 380


>gi|259488879|tpe|CBF88686.1| TPA: ATP-dependent RNA helicase (Drs1), putative (AFU_orthologue;
           AFUA_1G14990) [Aspergillus nidulans FGSC A4]
          Length = 814

 Score =  150 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 158/481 (32%), Positives = 236/481 (49%), Gaps = 42/481 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  LS  ++  +    +  PTPIQ KTIP+ L   D+ G A TG+GKTA+FV+P+L 
Sbjct: 299 SFQEFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILE 358

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++
Sbjct: 359 RLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKK 418

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 419 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 478

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTD + K+    L  P R+ V+T  +TA T+   FV        K       L 
Sbjct: 479 MLFSATMTDSVDKLIRVGLNRPVRLMVDTKKNTAVTLVQEFVRLRPGREDKRLGYLLHLC 538

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      I+F  QKK    +       G     +HG++ Q  R+K + +F++G +  ++
Sbjct: 539 KEVYTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFRDGNVNFLL 598

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + A 
Sbjct: 599 ATDLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDRKVVKAA 658

Query: 361 EKL---------------------------IEKKVD------WLNGDLSSLNPPLEK-ID 386
            K                            +E+++D       L   L+     + K  +
Sbjct: 659 VKAGKAQGAKIVSRVVDPSVADDWASKAKDMEEEIDAVLEEEKLEKQLAQAEMQVTKGEN 718

Query: 387 IAQHNHARKNNPIPQKSTGFD-RRKKNYSSQKSHIPLKESEKISKLQ---QDIQENDADS 442
           + +H    K+ P   K T F+  R+K  + +     L    K  K++   +D +  DA  
Sbjct: 719 LIKHEAEIKSRP---KRTWFETEREKRVAKKIGAAELNGPSKKEKVKLSNKDKKRLDAAK 775

Query: 443 L 443
           L
Sbjct: 776 L 776


>gi|67517117|ref|XP_658442.1| hypothetical protein AN0838.2 [Aspergillus nidulans FGSC A4]
 gi|40746512|gb|EAA65668.1| hypothetical protein AN0838.2 [Aspergillus nidulans FGSC A4]
          Length = 1676

 Score =  150 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 158/481 (32%), Positives = 236/481 (49%), Gaps = 42/481 (8%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
             F +  LS  ++  +    +  PTPIQ KTIP+ L   D+ G A TG+GKTA+FV+P+L 
Sbjct: 791  SFQEFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILE 850

Query: 62   ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++
Sbjct: 851  RLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKK 910

Query: 122  GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 911  RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 970

Query: 181  LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +LFSATMTD + K+    L  P R+ V+T  +TA T+   FV        K       L 
Sbjct: 971  MLFSATMTDSVDKLIRVGLNRPVRLMVDTKKNTAVTLVQEFVRLRPGREDKRLGYLLHLC 1030

Query: 241  SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +      I+F  QKK    +       G     +HG++ Q  R+K + +F++G +  ++
Sbjct: 1031 KEVYTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFRDGNVNFLL 1090

Query: 301  ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + A 
Sbjct: 1091 ATDLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDRKVVKAA 1150

Query: 361  EKL---------------------------IEKKVD------WLNGDLSSLNPPLEK-ID 386
             K                            +E+++D       L   L+     + K  +
Sbjct: 1151 VKAGKAQGAKIVSRVVDPSVADDWASKAKDMEEEIDAVLEEEKLEKQLAQAEMQVTKGEN 1210

Query: 387  IAQHNHARKNNPIPQKSTGFD-RRKKNYSSQKSHIPLKESEKISKLQ---QDIQENDADS 442
            + +H    K+ P   K T F+  R+K  + +     L    K  K++   +D +  DA  
Sbjct: 1211 LIKHEAEIKSRP---KRTWFETEREKRVAKKIGAAELNGPSKKEKVKLSNKDKKRLDAAK 1267

Query: 443  L 443
            L
Sbjct: 1268 L 1268


>gi|320162646|gb|EFW39545.1| ATP-dependent RNA helicase DRS1 [Capsaspora owczarzaki ATCC 30864]
          Length = 924

 Score =  150 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 133/450 (29%), Positives = 220/450 (48%), Gaps = 22/450 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ LS  ++ A+    +   T IQ  TIP  L   D+   A+TG+GKTA+F+LP+L 
Sbjct: 343 QFTEMNLSRPLLRAISSLNFANATDIQAATIPPALMGRDLVACAKTGSGKTAAFLLPVLE 402

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKLE 120
            L   +      R L+L PTRELA Q     EK  K  ++ ++L+ GG      Q +   
Sbjct: 403 RLLYRQKTNPASRVLVLSPTRELAVQCHAMGEKLAKFTDIRMSLICGGFSTKRQQAELRA 462

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++      I    N     +  IE+L++DEADR+L+MGF   +  I      +RQT
Sbjct: 463 HPDVIVATPGRLIDHLQNSPGFDLEGIEVLIMDEADRLLEMGFKEEVDEIIRQCSVSRQT 522

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTDE++ +    +  P R+ +N  + TA  +   FV    Q  K+   +   + 
Sbjct: 523 MLFSATMTDEVENLIALSMNKPLRVFINKNTDTATNLTQEFVRVRPQREKEKEAIVLAVC 582

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      I+F   K+            G     +HG+++Q  R++ L  FKEG +  ++
Sbjct: 583 KRSFHTKTIVFFRSKQGAHRAKVIFGLFGLKAAELHGDLNQLQRLESLEAFKEGRVDFLL 642

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLDI  V  V N D+PN    YIHR+GRT RAGR G++ +LV + + K +  I
Sbjct: 643 ATDLASRGLDIVGVETVVNADMPNTLTQYIHRVGRTARAGRAGRSLSLVCEGERKLLKEI 702

Query: 361 EK--------------LIEK---KVDWLNGDLSSLNPPLEK---IDIAQHNHARKNNPIP 400
            K              +IEK   K+   + D++++    ++   +  A+   A+ +N + 
Sbjct: 703 VKHATVPLSSRSIPSDVIEKFSTKIRGASKDIAAIMKAEKEEKMLLQAEMEAAKASNMME 762

Query: 401 QKSTGFDRRKKN-YSSQKSHIPLKESEKIS 429
            +   + +  +  +    +    KE+ K++
Sbjct: 763 HEKEIYSKPARTWFQDALAKKTSKENSKVA 792


>gi|118777945|ref|XP_308366.3| AGAP007511-PA [Anopheles gambiae str. PEST]
 gi|116132145|gb|EAA04660.3| AGAP007511-PA [Anopheles gambiae str. PEST]
          Length = 816

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 133/457 (29%), Positives = 218/457 (47%), Gaps = 14/457 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V+  +L  GY  PTPIQ KTIP++L   DV  +A+TG+GKT  F++PM   
Sbjct: 40  FQAMGLSAPVLKGILKMGYKIPTPIQRKTIPIILDGRDVVAMAKTGSGKTGCFLIPMFER 99

Query: 63  LEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L++  A+        IL PTRELA Q     ++ G+  +L   L++GG   ++Q   +  
Sbjct: 100 LKQREAKAGGGARALILSPTRELAIQTYKFIKQLGRFMDLKAILVLGGDSMDSQFAAVHT 159

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DV++ TPGR L       L +N+++  V DEADR+ +MGF   +      +P +RQ +
Sbjct: 160 LPDVIVATPGRFLHLCVEMDLKLNSVQYCVFDEADRLFEMGFGEQLTETIKRLPESRQMV 219

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +   +   L  P  I ++  S   +T+            +   LL  L + 
Sbjct: 220 LFSATLPKLMVDFATAGLCQPVLIRLDVESKIPDTL-DLKYIYCRPAERYATLLVLLREV 278

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             +    +IF   + +V  +   L K G     ++  +D  +R    + F    + ++V 
Sbjct: 279 IPSTAQTVIFAGTQHHVELISLMLTKAGVPNSHVYSGLDASARKINTAKFTHRKVNVLVV 338

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP +  V N   P + + +IHR+GR  RAGR G A+T+ + +D+ H+  + 
Sbjct: 339 TDIAARGLDIPTLDFVINLHFPGKPKLFIHRVGRCARAGRSGMAYTIFSNDDVAHLIDLH 398

Query: 362 KLIEKKVDWLNGDLSSLNPP--LEKIDIAQHNHAR--------KNNPIPQKSTGFDRRKK 411
             + + +D  +     + PP   E   +    + R        + +    K     R   
Sbjct: 399 MFLNRPLDVADRKTMGIVPPDMQETEHLLVQEYVRHVDLATAYRVSNNAYKQYIVTRPAA 458

Query: 412 NYSSQKSHIPLKESE--KISKLQQDIQENDADSLGFR 446
           + +S K     K  E   +   QQ+  E +A + G R
Sbjct: 459 SAASNKRAKQFKIDELGVLEDFQQEKAEPEAGARGKR 495


>gi|326795324|ref|YP_004313144.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326546088|gb|ADZ91308.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 403

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 118/405 (29%), Positives = 204/405 (50%), Gaps = 3/405 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   +  A+ D G   PTPIQI+ IP  L   D+   A TGTGKT +F  P++
Sbjct: 1   MSFEDLDLDFTIEQAISDMGLTSPTPIQIQAIPAALDAQDILASAPTGTGKTIAFAAPII 60

Query: 61  TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +          P+ LIL P+RELA Q+    EK   +  + + L++GG P+  Q K+L
Sbjct: 61  QHILDRDEESTLAPKALILAPSRELARQIFQVIEKLLTHTRIQLQLIVGGTPYGNQQKQL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+L+ TPGR+++   +G L ++++ + VIDEADRMLDMGFI  + +I   +P  + 
Sbjct: 121 SEPCDILVATPGRLIELDQKGWLDLSDVSMFVIDEADRMLDMGFIDAVTSIAKELPAHQT 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
               +    +++ + +   L+        + S  +   +   +A           L + +
Sbjct: 181 LFFSATIEGEKMGRFASTLLKEDATQIQLSESVRSVPSQITQLAMRVDDEPHKEALLKHI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +D      +F + K +V      +   G     +HG++ Q  R   L   K+G ++++
Sbjct: 241 LEKDETNQAAVFVSNKDHVDIWVQKIRNWGLRCDGLHGDMKQGDRNDHLKQMKKGRLKVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLD+P++  V N  +P +A+ Y+HR GR  R G  GK ++LV   D+  ++ 
Sbjct: 301 VATDVASRGLDLPEINTVINVRLPRKADAYVHRAGRASREGNPGKCYSLVDINDLPMMEK 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           I++ ++  V +    +  L P ++    ++    +K+     KS 
Sbjct: 361 IQRYMQVAVKF--TKIEGLEPKMKVRSPSRRPKKKKSTNTKAKSK 403


>gi|188589982|ref|YP_001922621.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251781234|ref|ZP_04824150.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|188500263|gb|ACD53399.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243081681|gb|EES47742.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 526

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 140/370 (37%), Positives = 214/370 (57%), Gaps = 7/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL   VV A+ D G+  P+ IQ ++IP+ L+  D+ G AQTGTGKTA++  P+L+
Sbjct: 5   KFYSLGLKDTVVKAIDDLGFNTPSQIQEESIPVTLEGFDLIGQAQTGTGKTAAYGCPILS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            L          + LIL PTRELA QV D  +K  K     V  + GG   + Q +   +
Sbjct: 65  RLN----DTNGIKALILAPTRELAVQVNDELKKLSKYEKANVLPVYGGESIDRQIRALRK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+LD  NR  L +N ++ LV+DEAD ML+MGFI  I+ I S  P  RQT
Sbjct: 121 DNIDIVVGTPGRVLDLINRKILKLNTVDFLVLDEADEMLNMGFIDDIETIISNTPAERQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + K+++N+++   +        ++ T+       +   +K        L 
Sbjct: 181 LLFSATMPAPIAKLAKNYMKADAKHV--AIKRSSLTVSKIEQNYFMINNKHRLEALCRLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D   + IIFC  KK V  L   L+ +G+ V  +HG++ Q  R+  L  FKEG++ L++
Sbjct: 239 DLDNPSSAIIFCRTKKGVDELVEELQGKGYVVEGMHGDMSQVHRLTTLKKFKEGSLNLLI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+D+P   E+Y+HRIGRTGRA R G A++LV+ +++  +  I
Sbjct: 299 ATDVAARGIDVDGITHVINYDLPQDVESYVHRIGRTGRANRTGTAYSLVSPKELGMLKQI 358

Query: 361 EKLIEKKVDW 370
           +++ +  +  
Sbjct: 359 QRVTKSTITE 368


>gi|302410479|ref|XP_003003073.1| ATP-dependent RNA helicase DBP2 [Verticillium albo-atrum VaMs.102]
 gi|261358097|gb|EEY20525.1| ATP-dependent RNA helicase DBP2 [Verticillium albo-atrum VaMs.102]
          Length = 577

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 115/414 (27%), Positives = 187/414 (45%), Gaps = 37/414 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +      V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 136 TFDEANFPRYVIDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 195

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 196 HINAQPLLAPGDGPIVLVLAPTRELAVQIQQEIAKFGKSSRIRNTCVYGGVPKGPQIRDL 255

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I S +   +Q
Sbjct: 256 SRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDKQ 315

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+++SAT   E++ ++ +FL +  ++ + +    A       V   ++  K+  +++ L 
Sbjct: 316 TVMWSATWPKEVRALASDFLDDFIQVNIGSMDLAANHRITQIVEVVSESEKRDRMIKHLE 375

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI------------ 287
           ++ +  +N  +     K V +      +Q            Q++                
Sbjct: 376 KAMENKENKALVFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPI 435

Query: 288 -----------------------LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPN 324
                                           Q  V   L     D+ ++ HV N+D PN
Sbjct: 436 MVATDVASRGIVKDTARCIRLSSPVPCWNVATQTPVTRMLTRLPQDVRNITHVINYDYPN 495

Query: 325 RAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            +E+YIHRIGRTGRAG  G A TL   ++ K    +  ++ +    ++  L+ +
Sbjct: 496 NSEDYIHRIGRTGRAGATGTAITLFTTDNSKQARDLVNVLREAKQEIDPRLAEM 549


>gi|221198351|ref|ZP_03571397.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
 gi|221208290|ref|ZP_03581294.1| dead/deah box helicase [Burkholderia multivorans CGD2]
 gi|221171938|gb|EEE04381.1| dead/deah box helicase [Burkholderia multivorans CGD2]
 gi|221182283|gb|EEE14684.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
          Length = 506

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 146/406 (35%), Positives = 220/406 (54%), Gaps = 28/406 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 31  SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 90

Query: 62  ILE-----------------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
                                     +    V  P  L+L PTRELA QV      YGK+
Sbjct: 91  RFAQLQKAQAQQPRAPREANQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 150

Query: 99  YNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
                   ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 151 LKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 210

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I+ I    P +RQT+LFSAT+  ++  ++   L++P+RIE+     +   I
Sbjct: 211 MLDMGFIEDIETIVEATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANI 270

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                    +  K        L     +   IIF   K +   L   L   GF   A+HG
Sbjct: 271 AQTVHYVDDRDHKDRL--LDHLLRDAALDQAIIFTATKIDADQLAGRLADAGFQSAALHG 328

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 329 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 388

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381
           RAGR G A +LV   +   +  IE+ +     V+ + G      PP
Sbjct: 389 RAGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRKTPP 434


>gi|161524403|ref|YP_001579415.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|189350842|ref|YP_001946470.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
 gi|160341832|gb|ABX14918.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
           ATCC 17616]
 gi|189334864|dbj|BAG43934.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
          Length = 505

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 146/406 (35%), Positives = 220/406 (54%), Gaps = 28/406 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 31  SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 90

Query: 62  ILE-----------------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
                                     +    V  P  L+L PTRELA QV      YGK+
Sbjct: 91  RFAQLQKAQAQQPRAPREANQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 150

Query: 99  YNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
                   ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 151 LKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 210

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I+ I    P +RQT+LFSAT+  ++  ++   L++P+RIE+     +   I
Sbjct: 211 MLDMGFIEDIETIVEATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANI 270

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                    +  K        L     +   IIF   K +   L   L   GF   A+HG
Sbjct: 271 AQTVHYVDDRDHKDRL--LDHLLRDAALDQAIIFTATKIDADQLAGRLADAGFQSAALHG 328

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 329 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 388

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381
           RAGR G A +LV   +   +  IE+ +     V+ + G      PP
Sbjct: 389 RAGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRKTPP 434


>gi|221215428|ref|ZP_03588392.1| dead/deah box helicase [Burkholderia multivorans CGD1]
 gi|221164612|gb|EED97094.1| dead/deah box helicase [Burkholderia multivorans CGD1]
          Length = 506

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 146/406 (35%), Positives = 220/406 (54%), Gaps = 28/406 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 31  SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 90

Query: 62  ILE-----------------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
                                     +    V  P  L+L PTRELA QV      YGK+
Sbjct: 91  RFAQLQKAQAQQPRAPREANQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 150

Query: 99  YNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
                   ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 151 LKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 210

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I+ I    P +RQT+LFSAT+  ++  ++   L++P+RIE+     +   I
Sbjct: 211 MLDMGFIEDIETIVEATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANI 270

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                    +  K        L     +   IIF   K +   L   L   GF   A+HG
Sbjct: 271 AQTVHYVDDRDHKDRL--LDHLLRDAALDQAIIFTATKIDADQLAGRLADAGFQSAALHG 328

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 329 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 388

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381
           RAGR G A +LV   +   +  IE+ +     V+ + G      PP
Sbjct: 389 RAGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRKTPP 434


>gi|237786051|ref|YP_002906756.1| putative ATP-dependent RNA helicase [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237758963|gb|ACR18213.1| putative ATP-dependent RNA helicase [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 558

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 140/437 (32%), Positives = 226/437 (51%), Gaps = 12/437 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG++ ++V A+ + G      IQ  T+PL L   D+ G A+TG GKT ++ +P+L 
Sbjct: 93  TFEELGVAAEIVDALAEHGITHTFAIQELTLPLALDGKDLIGQARTGMGKTLAYGVPLLD 152

Query: 62  ILEKGRARVR---MPRTLILEPTRELAAQVA--------DNFEKYGKNYNLTVALLIGGI 110
            +    A       PR L++ PTRELA QVA               ++ +L V  + GG 
Sbjct: 153 RIFDDAAIPELDGTPRALVVAPTRELAYQVADDLTLAARHLANFNEEHRSLRVTTICGGH 212

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
           PFE Q  +L  G D ++ TPGR+LD     +L ++++ +LV+DEAD MLD+GF+P I+ I
Sbjct: 213 PFEKQIAQLREGTDCIVGTPGRLLDLCKNRELNLSHVAVLVLDEADEMLDLGFLPDIEKI 272

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
              VP  RQT+LFSATM   +  ++  F  N         +  + T        +  +  
Sbjct: 273 LQQVPEKRQTILFSATMPAPIMALARTF-MNKPVHIRAEGTDDSTTHTTTKQVAFKNHKL 331

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
                   +         IIF   K++  ++   L ++GF V A+HG++ Q +R K L+ 
Sbjct: 332 NKLATLSAILQAHNRGRTIIFTRTKRSAADVADDLAQRGFLVGAVHGDMAQPAREKSLNA 391

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+   I+++VA+D+AARG+D+ DV HV N+ VP+ A  Y+HRIGRTGRAG  G A TLV 
Sbjct: 392 FRSKKIEILVATDVAARGIDVDDVTHVINYQVPDDAMTYVHRIGRTGRAGHTGTAVTLVG 451

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            +++     I+  ++  +  L+   S+     E +DI    + R     P          
Sbjct: 452 WDEVTKWKVIDDELDLNIGELDEWFSTSPELREALDIPDDVNERVGESRPVYGGAKALSP 511

Query: 411 KNYSSQKSHIPLKESEK 427
           +  S++++  P +++ +
Sbjct: 512 QRKSAKRASRPRRDNRR 528


>gi|114799942|ref|YP_759839.1| ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC 15444]
 gi|114740116|gb|ABI78241.1| ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC 15444]
          Length = 464

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 146/369 (39%), Positives = 215/369 (58%), Gaps = 5/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGL+ +++ ++  AGY  PTPIQ + IPLV+Q  D+ G+AQTGTGKT +F  P+L 
Sbjct: 8   DFQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILD 67

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                   A VR  R L+L PTRELA Q+A +F  YG   NL V ++ GG     Q ++L
Sbjct: 68  RLSRNASPAPVRGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQL 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGA +L+ TPGR++D   +  + ++ +E L++DEAD+MLD+GFI  ++ I   VP  RQ
Sbjct: 128 ERGAHILVATPGRLIDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVPSKRQ 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM   ++ ++  FL+NP  + V  P++TA  IE               + +   
Sbjct: 188 TLFFSATMPKAVESLAATFLRNPAEVSVAPPATTAGRIEQRVCFVEQPEKASLLIEK--- 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +++ I+F   K     +   L K      AIHGN  Q  R K L  FK G + ++
Sbjct: 245 IRDPELRSAIVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+ +  + HV N+D+P+  E ++HRIGRT RAG  G A +  ++++   + A
Sbjct: 305 VATDIAARGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFCSRDERPTLRA 364

Query: 360 IEKLIEKKV 368
           IEKL   K+
Sbjct: 365 IEKLTGLKL 373


>gi|187933940|ref|YP_001887642.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722093|gb|ACD23314.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
           Eklund 17B]
          Length = 526

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 140/370 (37%), Positives = 213/370 (57%), Gaps = 7/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL   VV A+ D G+  P+ IQ ++IP+ L+  D+ G AQTGTGKTA++  P+L+
Sbjct: 5   KFYSLGLKDTVVKAIDDLGFNTPSQIQEESIPVTLEGFDLIGQAQTGTGKTAAYGCPILS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            L          + LIL PTRELA QV D  +K  K     V  + GG   + Q +    
Sbjct: 65  RLN----DTNGIKALILAPTRELAVQVNDELKKLSKYEKANVLPVYGGESIDRQIRALRR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+LD  NR  L +N ++ LV+DEAD ML+MGFI  I+ I S  P  RQT
Sbjct: 121 DNIDIVVGTPGRVLDLINRKILKLNTVDFLVLDEADEMLNMGFIEDIETIISNTPAERQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM   + K+++N+++   +        ++ T+       +   +K        L 
Sbjct: 181 LLFSATMPAPIAKLAKNYMKADAKHV--AIKRSSLTVSKIEQNYFMINNKHRLEALCRLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D   + IIFC  KK V  L   L+ +G+ V  +HG++ Q  R+  L  FKEG++ L++
Sbjct: 239 DLDNPSSAIIFCRTKKGVDELVEELQGKGYVVEGMHGDMSQVHRLTTLKKFKEGSLNLLI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  + HV N+D+P   E+Y+HRIGRTGRA R G A++LV+ +++  +  I
Sbjct: 299 ATDVAARGIDVDGITHVINYDLPQDVESYVHRIGRTGRANRTGTAYSLVSPKELGMLKQI 358

Query: 361 EKLIEKKVDW 370
           +++ +  +  
Sbjct: 359 QRVTKSTITE 368


>gi|256077046|ref|XP_002574819.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238660034|emb|CAZ31052.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 637

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 140/431 (32%), Positives = 217/431 (50%), Gaps = 18/431 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L L   V   V  A Y +PTP+Q   IP++    D+   AQTG+GKTA+F++P+L 
Sbjct: 174 SFTELSLHKIVRDNVELANYERPTPVQKHAIPIIASGRDLMACAQTGSGKTAAFLIPILN 233

Query: 62  IL------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            +                 R + P  LIL PTRELA+Q+ D+  K+     +   +L GG
Sbjct: 234 NMIKQGPGDSISATINNNRRKQFPVALILAPTRELASQIFDDARKFSYRSLIRPCVLYGG 293

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q  +L  G ++L+ TPGR+ D   RG++ ++    LV+DEADRMLDMGF P I+ 
Sbjct: 294 ADMRTQLMELSEGCNLLVATPGRLSDVLERGRVGLDYCRFLVLDEADRMLDMGFEPQIRR 353

Query: 170 ITSL----VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I           RQTL+FSAT  +E+Q ++++FL N   + V    ST+E I    +   
Sbjct: 354 IVEQDALPPSGERQTLMFSATFPNEIQILAKDFLNNYIFLTVGRVGSTSENITQTILWVE 413

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
               +   +         T+   ++F   ++    L + L  Q F V +IHG+  Q  R 
Sbjct: 414 ENAKRDTLIDLLAHSEAGTLI--LVFVETRRGADALENYLYSQKFQVASIHGDRTQEDRE 471

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             LS F+ G   ++VA+ +AARGLDIP+V HV N+D+P+  E Y+HRIGRTGR G  G A
Sbjct: 472 LALSCFRSGRTPVLVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRVGNLGLA 531

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            +    ++      + +L+E+    +   L ++       +I +  + R+     +    
Sbjct: 532 TSFFNDKNRNLARGLVELLEEANQAIPPWLKAITGDGRPTNIQRPRNNRRGGFGARDYRQ 591

Query: 406 FDRRKKNYSSQ 416
              R  N S++
Sbjct: 592 TPSRGANSSNR 602


>gi|62638007|gb|AAX92639.1| Vasa protein [Monopterus albus]
          Length = 450

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 126/389 (32%), Positives = 200/389 (51%), Gaps = 13/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTASF+LP+L
Sbjct: 24  MTFDEAELCETLRRNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTASFLLPIL 83

Query: 61  TILEK------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + ++ P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 84  QQLMVDGVAASCFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGY 143

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
           Q +++ +G +VL  TPGR+LD   R K+ ++ +  LV+DEADRMLDMGF P ++      
Sbjct: 144 QIREILKGCNVLCGTPGRLLDMIGRAKVGLSKLRYLVLDEADRMLDMGFEPDMRRLVGSP 203

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                   QTL+FSAT  +++Q+++ +FL+             A T          ++SK
Sbjct: 204 GMPPKENHQTLMFSATFPEDIQRMAADFLKTDYLFLAVGVVGGACTDVEQTFVQVTKFSK 263

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +              +  ++F   K+    +   L ++     +IHG+ +Q  R K L++
Sbjct: 264 RD--QLLEFLKTTGTERTMVFVETKRQADFIALFLCQEKVPTTSIHGDREQPEREKALAD 321

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDIPDV HV NFD+PN  + Y+HRIGRTGR G  G+A +   
Sbjct: 322 FRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNIGRAVSFFD 381

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
              D +   ++  ++ K    +   L   
Sbjct: 382 PNADGQLARSLVMILSKAQQEVPSWLEEF 410


>gi|2137271|pir||I49638 probable RNA helicase protein - mouse (fragment)
 gi|286075|dbj|BAA03584.1| Drosophila vasa homologue [Mus musculus]
          Length = 637

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 119/389 (30%), Positives = 195/389 (50%), Gaps = 13/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  TIP+VL   D+   AQTG+GKTA+F+LP+L
Sbjct: 202 LTFEEANLCQTLNNNIRKAGYTKLTPVQKYTIPIVLAGRDLMACAQTGSGKTAAFLLPIL 261

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             + +          ++ P  +I+ PTREL  Q+     K+     +   ++ GG  F  
Sbjct: 262 AHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVISVVIYGGTQFGH 321

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +++ +G ++L  TPGR++D   + K+ +  ++ LV+DEAD MLDMGF P I+ + S  
Sbjct: 322 SVRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADSMLDMGFAPEIKKLISCP 381

Query: 175 PFTRQTLL----FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
               +       FSAT  +E+Q+++ +FL++            A       +    QY K
Sbjct: 382 GMPSKEQHQTLLFSATFPEEIQRLAGDFLKSNYLFVAVGQVGGACRDVQQTILQVGQYQK 441

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
                          +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 442 --EKSLLRFYENIGDERTMVFVETKKKADFIATFLCQEKISSTSIHGDREQREREQALGD 499

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV- 349
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 500 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 559

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
              D      + K++      +   L  +
Sbjct: 560 TDSDNHLAQPLVKVLSDAQQDVPAWLEEI 588


>gi|322784405|gb|EFZ11376.1| hypothetical protein SINV_10914 [Solenopsis invicta]
          Length = 626

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 129/394 (32%), Positives = 196/394 (49%), Gaps = 16/394 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++     ++  +   G VKPTPIQ++ IP VL   D+ GIA TG+GKT  FVLP++  
Sbjct: 187 FKEMKFHKGILYGLEQKGIVKPTPIQVQGIPTVLSGRDMIGIASTGSGKTLVFVLPIIEF 246

Query: 63  L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI------P 111
                 +    +   P  LI+ P+RELA Q  D    Y  +   T    I         P
Sbjct: 247 CLEQEIDMPFIKKEGPYGLIICPSRELAKQTFDIIRHYTNSIRQTDCPEIRCCLAIGGVP 306

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
                  + +G  +++ TPGR++D  ++  + ++    L +DEADRM+DMGF   ++ I 
Sbjct: 307 VSESLAVINKGVHIMVATPGRLMDMLHKKMVTLSVCRYLCMDEADRMIDMGFEEDVRTIF 366

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM   +Q     F ++     V      A       V       ++
Sbjct: 367 SFFRGQRQTLLFSATMPKRIQN----FARSALVKPVTINVGRAGAASMNVVQEVEYVKQE 422

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             ++  L   Q T    +IF  +K++V  +   L  +G    AIHG IDQ  R + +  F
Sbjct: 423 AKIVYLLECLQKTAPPVLIFAEKKRDVDAIHEYLLIKGVEAVAIHGGIDQEERSRSVEAF 482

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G   ++VA+D+A++GLD  +V HV N+D+P+  ENY+HRIGRTGR+GR G A T + K
Sbjct: 483 RAGRKDVLVATDVASKGLDFAEVQHVINYDMPDDVENYVHRIGRTGRSGRTGIATTFINK 542

Query: 352 -EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
             D   +  ++ L+ +    +   L  L    EK
Sbjct: 543 ANDESVLLDLKHLLMEAKQKVPPFLLELCSENEK 576


>gi|262401852|ref|ZP_06078417.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC586]
 gi|262351824|gb|EEZ00955.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC586]
          Length = 460

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 140/402 (34%), Positives = 224/402 (55%), Gaps = 9/402 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L L P+++  +   G+   TPIQ +++P +L   DV G  +TG+GKTA+F L +L+
Sbjct: 5   SFAALNLKPELLANLETMGFASMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+    L+L PTRELA QVA +    G+  +    L +  G+P   Q   LE
Sbjct: 65  NLNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRTIHNIKVLTLCGGMPMGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH ++ ++ ++ +  LV+DEADRML+MGF   ++ I +  P  RQT
Sbjct: 122 HGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++V+++  +N   I+V     T +T            S       + L 
Sbjct: 182 LLFSATYPASIEQVAQSVTRNAMMIKVAA---THDTSSIRQYFYNVDGSTARDEALETLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + ++FCN K+ V N+  +L + GFSV  +HG+++QR R + L  F   +I ++V
Sbjct: 239 LHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFN+D+    E ++HRIGRTGRAG  G AF+  +  +   +  I
Sbjct: 299 ATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQI 358

Query: 361 EKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           ++ ++  ++   L    +   P    +   Q +  +K+   P
Sbjct: 359 DEYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRP 400


>gi|68490782|ref|XP_710786.1| potential DEAD box RNA helicase [Candida albicans SC5314]
 gi|68490809|ref|XP_710773.1| potential DEAD box RNA helicase [Candida albicans SC5314]
 gi|46432016|gb|EAK91525.1| potential DEAD box RNA helicase [Candida albicans SC5314]
 gi|46432030|gb|EAK91538.1| potential DEAD box RNA helicase [Candida albicans SC5314]
          Length = 496

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 120/453 (26%), Positives = 199/453 (43%), Gaps = 17/453 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F D+     ++ KV+  ++D  +V+PTPIQ ++IP+ L   D+   A TG+GKT +F++
Sbjct: 46  SFQDMIGRFHINKKVLSNLIDNEFVEPTPIQCESIPITLNNRDLIACAPTGSGKTLAFLI 105

Query: 58  PMLTIL-EKGRARVRMPRTLILEPTRELAAQVADNFEK--YGKNYNLTVALLIGGIPFEA 114
           P++  +  K  ++    R LI+ PT ELA Q+    E    G        L         
Sbjct: 106 PLVQQILSKNVSKNHGIRGLIISPTNELAVQIFQELEIITRGCKQINVAILSKQLASKLN 165

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
            N       D+++ TP R++D   +G + ++ IE L+IDEAD++ D GF      I +  
Sbjct: 166 NNIIKSSKYDIIVSTPLRLIDVVKQGNMDLSKIEQLIIDEADKLFDHGFAEQTDEILTHC 225

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              +      +       +   + +       +      A       +        K   
Sbjct: 226 TNPKIRKSIFSATIPSSVEEMAHSIMKDPLRIIIGHKEAASNTIDQKLVFTGNEQGKLLA 285

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           ++Q++Q  +     IIF         L H L     +V  IH     + R +++  FK G
Sbjct: 286 IRQMIQQGEFKPPIIIFLQSITRAKALFHELLYDRLNVDVIHAERTPKQREEVIKRFKNG 345

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I +++ +D+ ARG+D   V  V N+DVP  A+ Y+HRIGRTGR G+ GKA T   KED 
Sbjct: 346 DIWVLITTDVLARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDD 405

Query: 355 KHIDAIEKLIEKK------VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           K I  I  ++++         W+  D+  L+   EK  I  H   RK   I        +
Sbjct: 406 KAIKPILNVMKQSGCNDGYSQWME-DMGKLSKK-EKKQIKTHEIQRKK--ISTVPKVIKQ 461

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDAD 441
           ++K      +    ++ E   + +Q+   ND  
Sbjct: 462 KRKQRQDMIAASKRRKQESKQESKQESHSNDER 494


>gi|310791457|gb|EFQ26984.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 772

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 144/446 (32%), Positives = 224/446 (50%), Gaps = 10/446 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++  +   G+ KPTPIQ KTIP+ L   DV G A TG+GKT +FV+P+L 
Sbjct: 248 SFQAMSLSRPLLRGLAAVGFSKPTPIQAKTIPIALMGKDVVGGAVTGSGKTGAFVVPILE 307

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R +IL PTRELA Q      K     ++   L +GG+  +AQ  +L  
Sbjct: 308 RLLYRPKKVPTSRVVILTPTRELAIQCHAVATKLAAYTDIKFTLAVGGLSLKAQEVELRL 367

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 368 RPDVIIATPGRFIDHMRNSASFNVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQT 427

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSATMT  + K+    +  P R+ V++  +    T+   FV       +K       +
Sbjct: 428 MLFSATMTSSVDKLVRLGMNKPARVMVDSQKNKTVGTLVQEFVRLRPGREEKRMGYLVHI 487

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  I+F  QKK            G S   +HG+++Q  R+  + NF++G +  +
Sbjct: 488 CKTMHTERVIVFFRQKKEAHRARIIFGLLGMSCAELHGSMNQAQRIASVENFRDGKVNYL 547

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G A TL A+ D K + A
Sbjct: 548 LATDLASRGLDIKGVDTVINYEAPQNIEIYVHRVGRTARAGRTGIAITLAAEPDRKVVKA 607

Query: 360 I--------EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
                     K++ + ++    D         + +I +     K      ++    R+ +
Sbjct: 608 AVKAGKAQGAKIMSRIIEPAEADKWQAQVDEMEDEIEEIMVEEKQEKQFAQAEMQVRKGE 667

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQE 437
           N    ++ I  +      + +QD ++
Sbjct: 668 NILQHEAEIKARPKRTWFETEQDKKK 693


>gi|195381768|ref|XP_002049617.1| GJ21693 [Drosophila virilis]
 gi|194144414|gb|EDW60810.1| GJ21693 [Drosophila virilis]
          Length = 784

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 151/475 (31%), Positives = 240/475 (50%), Gaps = 20/475 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP + 
Sbjct: 158 SFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTVE 217

Query: 62  I-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +      + R L+L PTREL AQV    ++  +  ++ V L IGG+  +AQ   L 
Sbjct: 218 RLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQETVLR 277

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  D++I TPGR++DH         ++IE+L++DEADRMLD  F   ++ I +    TRQ
Sbjct: 278 QNPDIVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQ 337

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM+++++ ++   L  P ++ VN     A  +   F+            +   L
Sbjct: 338 TMLFSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASL 397

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + ++F   KK    L   L   G     +HGN+ Q+ R++ L  FKE  I ++
Sbjct: 398 ICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVL 457

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  
Sbjct: 458 IATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKD 517

Query: 360 IEKLIEKK----------VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           I K  E            ++     L++L P ++  +I     A +     ++      R
Sbjct: 518 IIKNAESSVKNRIIPPEIIEKYRNKLTALEPEIQ--NILDEEQAERQLAKTEQQLSKTER 575

Query: 410 K--KNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
           K     + +++    K+  +  K +  +  ND +S       PA    K  GK  
Sbjct: 576 KLLGQPNERRTWFQTKQQRENEKARLALTSNDEES----KPAPAAGKGKTAGKRK 626


>gi|115352130|ref|YP_773969.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115282118|gb|ABI87635.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
          Length = 512

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 143/392 (36%), Positives = 217/392 (55%), Gaps = 26/392 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 37  SFASLGLSPEIVSALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96

Query: 62  ILEK-----------------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
              +                           V  P  L+L PTRELA QV      YGK+
Sbjct: 97  RFAQLQKTLAQQPRTPREPSQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 156

Query: 99  YNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
                   ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 157 LKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 216

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I+ I +  P +RQT+LFSAT+  ++  ++   L++P+RIE+     +   I
Sbjct: 217 MLDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTGRLLKDPERIEIQQRLESRTNI 276

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                    +  K        L   D +   IIF   K +   L   L   GF   A+HG
Sbjct: 277 AQTVHYVDDRDHKDRL--LDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHG 334

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 335 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 394

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           RAGR G A +LV   +   +  IE+ +   + 
Sbjct: 395 RAGRSGTAVSLVHHAEQGALKRIERFVRSPLP 426


>gi|188575689|ref|YP_001912618.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520141|gb|ACD58086.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 614

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 134/361 (37%), Positives = 213/361 (59%), Gaps = 7/361 (1%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM 72
           + AV + GY  P+PIQ  TIP +L   DV G AQTGTGKTA+F LP+L+  +  + +   
Sbjct: 1   MRAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSNADLNQVK--- 57

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLERGADVLICTPG 131
           P+ L+L PTRELA QVA+ F+KY +       L + G  P+  Q   L+RG  V++ TPG
Sbjct: 58  PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGTPG 117

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R++DH +RG L ++ ++ LV+DEAD ML MGFI  ++ +   +P  RQ  LFSATM   +
Sbjct: 118 RVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPPAI 177

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
           +++++ +L++P  + +   ++T+  I   +      +          ++  D M   IIF
Sbjct: 178 RRIAQTYLKDPAEVIIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGM---IIF 234

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
              K     L   L+ +G +  AI+G++ Q +R K ++  K+G + ++VA+D+AARGLD+
Sbjct: 235 ARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDV 294

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
             + HV N+D+P   E+Y+HRIGRTGRAGR G A   V   +   + +IE+   + ++ +
Sbjct: 295 ERISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTLREKGMLRSIERATRQPIEEM 354

Query: 372 N 372
            
Sbjct: 355 Q 355


>gi|159490042|ref|XP_001702998.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158270905|gb|EDO96736.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 485

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 121/369 (32%), Positives = 186/369 (50%), Gaps = 3/369 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G SP V+ A+   GY  PTPIQ + +P+++Q  DV G+A+TG+GKTA+FVLPM+ 
Sbjct: 11  TFDSMGFSPDVLRAIKRKGYRLPTPIQRRAMPMIMQGLDVVGMARTGSGKTAAFVLPMIH 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE-AQNKKLE 120
            L++   R    R +IL PTRELA Q         K  +L  A L+GG   E    +   
Sbjct: 71  RLKEHSIRAGA-RAVILSPTRELALQTHKTVRDLCKYTSLRTACLVGGDSMEVQFAELAA 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++               L +  +E  V DEADRM +MGFI  +  +   +   RQT
Sbjct: 130 NPDVIVATPGRLAHHLEEVEGLSLRAVEYCVCDEADRMFEMGFIAQVSELLRKMSPGRQT 189

Query: 181 LLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSATM   L +  S                 + E     F    A   K  A+L  + 
Sbjct: 190 LLFSATMPSTLAEFASAGLNAPQLVRLDTERKISPELGLAFFTCRCAFEDKVAAMLHLVR 249

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +     +  I+F   + +   L   L K+G     + G++DQ +R   ++ F+ G   L+
Sbjct: 250 EVVPANQLTILFTATRHHAEFLYTLLLKEGVDAACVFGSMDQTARKIHVAKFRAGRSHLL 309

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+AARG+DIP + +V NFD P + E ++HR+GR  RAGR G A++L+ +E++ ++  
Sbjct: 310 VTTDVAARGIDIPLIDNVINFDFPPKPELFVHRVGRAARAGRSGTAYSLLTREELPYLLD 369

Query: 360 IEKLIEKKV 368
           +   + + V
Sbjct: 370 LHLYLSRDV 378


>gi|239637630|ref|ZP_04678602.1| ATP-dependent RNA helicase, dead/deah box family [Staphylococcus
           warneri L37603]
 gi|239596848|gb|EEQ79373.1| ATP-dependent RNA helicase, dead/deah box family [Staphylococcus
           warneri L37603]
          Length = 447

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 136/440 (30%), Positives = 209/440 (47%), Gaps = 10/440 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+  ++ AV D  + KPT IQ + IP +L+  ++ G +QTGTGK+ SF+LP++  
Sbjct: 6   FEHFGLNSSMIEAVKDLRFEKPTEIQNRIIPRILKGTNIIGQSQTGTGKSHSFLLPLVNE 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNKKLER 121
           ++     +  P+ +++ PTRELA Q+               A L IGG   E   ++  +
Sbjct: 66  IDT---EIHEPQAIVVAPTRELAQQLYQAANHLSSFKEGVNAKLFIGGTDIEKDRQRCNQ 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L  +    L+IDEAD M+D+G I  +  I S +       
Sbjct: 123 QPQLVIGTPTRINDLSKSGHLHTHLASYLIIDEADLMIDLGLIEDVDYIASRLEEHSNIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+   LQ     +L+ P  +EV+  S   + IE   + T      +  L       
Sbjct: 183 VFSATIPKSLQPFLNKYLEQPDFVEVDNQSQNKKNIEFYLIPTKGTAKVEKTLKL---ID 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFCN + +   L  +L + G  V  IHG +  R R + +   +    Q ++A
Sbjct: 240 ILNPYLCIIFCNSRDSADELARTLNEAGIKVGMIHGGLTPRERKQQMKRIRNLDFQFVIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I AIE
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYRGVAITLYSPDEEDNISAIE 359

Query: 362 K--LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
               + + VD  N +L+ +          QH      N +  K     +RK     +K  
Sbjct: 360 DRGYVFENVDIKNDELTPI-KAHNTRRTRQHKDDHLTNEVKNKVRSKTKRKVKPGYKKKF 418

Query: 420 IPLKESEKISKLQQDIQEND 439
               E  K  + +Q  +  +
Sbjct: 419 KQEVERMKRQERKQFSKRQN 438


>gi|254491400|ref|ZP_05104579.1| DbpA RNA binding domain family [Methylophaga thiooxidans DMS010]
 gi|224462878|gb|EEF79148.1| DbpA RNA binding domain family [Methylophaga thiooxydans DMS010]
          Length = 460

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 139/406 (34%), Positives = 206/406 (50%), Gaps = 17/406 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L LS   + A+   GY   T IQ +++P +L+ +D+   A+TG+GKTA+F + +L 
Sbjct: 5   SFRSLQLSKAQLDALDSLGYESMTAIQAQSLPEILKGNDLIAQAKTGSGKTAAFGIGLLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            L     R    + L+L PTRELA QV     K  +       +++ G  P   Q   LE
Sbjct: 65  KLNP---RFFGAQALVLCPTRELAEQVGKEIRKLARFMPNIKLVMLCGGKPIGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ DH  +  L ++ +  LV+DEADRMLDMGF   +Q I    P  RQT
Sbjct: 122 HGAHIVVGTPGRVQDHLRKNTLKLDGLTTLVLDEADRMLDMGFADAMQAIIGQTPKNRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D +Q +S       +R  V          E      Y             L 
Sbjct: 182 LLFSATYPDTIQHMSRQI----QRNPVTVTVEAEHNKEVIQQVFYEVSKHDRNTALLSLF 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +    +  ++FC+ KK   ++   L  +     AIHG++DQR R ++L  F   +  ++V
Sbjct: 238 AHYQPETCVVFCHTKKQCDDVADFLNNEQIDALAIHGDLDQRDRDQVLVRFANNSCPVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++P   E Y+HRIGRTGRAG+ G A ++V   +   I AI
Sbjct: 298 ATDVAARGLDIKALQMVINYELPRDPEVYVHRIGRTGRAGQTGLAMSIVTPNETPRILAI 357

Query: 361 EKLIEK-----KVDWLNGDLS-SLNPPLEKIDIAQHNHARKNNPIP 400
           E+   +     ++  LN ++  SL  P+  I I   +  RK    P
Sbjct: 358 EEYSNRPCPCDELTLLNNNVDFSLQAPMATIQI---DAGRKGKLRP 400


>gi|189242416|ref|XP_001811064.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase
           [Tribolium castaneum]
          Length = 1142

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 130/379 (34%), Positives = 206/379 (54%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--L 60
           F +      ++  +L  G+ +PT IQ +  P+VL   D+ GIAQTG+GKT +++LP    
Sbjct: 552 FDEGNFPEYIMQVILKQGFAEPTAIQSQGWPVVLSGRDLVGIAQTGSGKTLAYMLPAVVH 611

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              ++   R   P  LIL PTRELA Q+     ++G    +    + GG P   Q + LE
Sbjct: 612 INNQQRPQRGEGPVALILAPTRELAQQIQKVAHEFGSTTMVRNTCIFGGSPKGPQARDLE 671

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 672 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRPDRQV 731

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   ++Q ++E FL +  ++ +   S  A       V    +  K+  L + L +
Sbjct: 732 LMWSATWPKQVQALAEEFLVDYIQVNIGGLSLAANHNIKQIVEVCEESEKEEKLCKLLKE 791

Query: 241 SQDTMKNGIIFC-NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 N II     KK V ++   + ++G++  +IHG+  Q  R  +LS F+ G   ++
Sbjct: 792 IGSDSCNKIIVFVETKKKVDDITKCIRREGYAAISIHGDKSQPERDYVLSEFRTGKSSIL 851

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV +V NFD PN +E+Y+HRIGRTGR  + G A+      + +    
Sbjct: 852 VATDVAARGLDVEDVKYVINFDYPNSSEDYVHRIGRTGRCQQAGTAYAFFTSNNQRQAKD 911

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +  ++E+    ++ +L  L
Sbjct: 912 LIAVLEEAGQNVSAELRDL 930


>gi|188995896|ref|YP_001930148.1| ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC 33277]
 gi|188595576|dbj|BAG34551.1| ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC 33277]
          Length = 604

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 131/397 (32%), Positives = 225/397 (56%), Gaps = 17/397 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F +LG++   + A+ + G+ +P P+Q + IP +L +  D+  +AQTGTGKTA+F LP+L
Sbjct: 3   TFEELGIAKPFLKAIAELGFEQPMPVQEEVIPYLLGEDIDLIALAQTGTGKTAAFGLPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++    R   P+ L+L PTREL  Q+AD+   Y K  +    L + G  P +AQ + L
Sbjct: 63  QKIDLSGGR---PQALVLCPTRELCLQIADDLNSYSKYLSDVHILPVYGGTPIDAQIRAL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG  +++ TPGR+LD   R  + +++I  +V+DEAD ML+MGF   ++ I + +P  R 
Sbjct: 120 RRGVQIVVATPGRLLDLMRREAVSLSDIHTVVLDEADEMLNMGFAEDLEQILADIPSERH 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  E+ K++ +++++PK I +    +  E   +     Y   ++   L  + +
Sbjct: 180 LLLFSATMPKEISKIAASYMKDPKEIVIG---NKNEGNANIKHLYYMVSARHKYLALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GI+FC  +K    +   L + G++  ++HG++ Q  R  ++  F+   +QL+
Sbjct: 237 ADYYPNIYGIVFCRTRKETQEIADQLIQDGYNADSLHGDLSQAQRDYVMQKFRVRNLQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV +F +P+  E+Y HR GRT RAG+ G +  +   ++   I  
Sbjct: 297 VATDVAARGLDVNDLTHVIHFGLPDDVESYTHRSGRTARAGKTGLSIAICHVKEKGKIKN 356

Query: 360 IEKLIEKKVDW---------LNGDLSSLNPPLEKIDI 387
           IE+ ++K+++              L +L   +E++DI
Sbjct: 357 IERTMQKQIERARIPSGAEICEKQLFNLADRIERVDI 393


>gi|109478564|ref|XP_234443.4| PREDICTED: DEAD-box protein abstrakt-like [Rattus norvegicus]
          Length = 621

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 129/389 (33%), Positives = 196/389 (50%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L   ++  +   G + PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 181 SFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 240

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 241 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALCIGGV 300

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 301 SLKEQMETMRHGVHIMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 360

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 361 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKE 416

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 417 EAKMVYLLECLQKTPPPVLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 476

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 477 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 536

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 537 KACDESVLMDLKALLLEAKQKVPPVLQVL 565


>gi|195385611|ref|XP_002051498.1| vas [Drosophila virilis]
 gi|21361025|gb|AAM49782.1|AF513908_1 DEAD-box RNA helicase [Drosophila virilis]
 gi|194147955|gb|EDW63653.1| vas [Drosophila virilis]
          Length = 625

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 123/382 (32%), Positives = 207/382 (54%), Gaps = 9/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    L   V+  V+ +GYV PTPIQ  +IP++ +  D+   AQTG+GKTA+F+LP+L 
Sbjct: 212 NFESARLRGIVLDNVVKSGYVVPTPIQKVSIPVIAEGRDLMACAQTGSGKTAAFLLPILN 271

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +        +  P+ +I+ PTRELA Q+ +   K+     L ++++ GG  F+ QN+ +
Sbjct: 272 NILDESHDLEIGKPQAVIVSPTRELAIQIFNEARKFSYTTYLKISIVYGGTSFKYQNECI 331

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  VLI TPGR+LD  +R  +  ++   +V+DEADRMLDMGF   ++ I        +
Sbjct: 332 TKGCHVLIATPGRLLDFVDRTFITFDDTRFIVLDEADRMLDMGFSDSMRKIMHHQTMRPE 391

Query: 180 TL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
               +FSAT  +E+Q+++  FL+N   + +         ++     T  + +K     + 
Sbjct: 392 HQTLMFSATFPEEIQRMAGEFLKNYVFVTIGVVGGACSDVQQ----TVYEVNKFNKRSKL 447

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +   ++     I+F   K+    L     +  F   +IHG+  Q  R + L +FK GT++
Sbjct: 448 MEILREGADGTIVFVETKRGADFLASFFSETEFPTTSIHGDRLQSQREQALRDFKTGTMK 507

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKH 356
           +++A+ +A+RGLDI +V HV N+D+P   ++Y+HRIGRTGR G  G+A +    E D   
Sbjct: 508 VLIATSVASRGLDIKNVKHVINYDMPTNIDDYVHRIGRTGRVGNSGRATSFFDPEQDRTL 567

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
              + K++E     +   L  +
Sbjct: 568 AADLIKILEGSGQEVPEFLKEI 589


>gi|326531018|dbj|BAK04860.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326531744|dbj|BAJ97876.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 415

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 139/362 (38%), Positives = 210/362 (58%), Gaps = 4/362 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D G    ++ A+   GY KPT IQ + +P+VL   D+ GIA+TG+GKTA+FVLPM+ 
Sbjct: 41  NFEDCGFPVPLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIV 100

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       +   P  +I  PTRELA Q+    +K+ K YNL VA + GG+    Q K+L
Sbjct: 101 HIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKPYNLQVAAVYGGVSKFEQFKEL 160

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++++ TPGR++D      L M      V+DEADRM D+GF P I++I   +   RQ
Sbjct: 161 KSGCEIVVATPGRLIDLLKMKALRMFRATYSVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 220

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  ++++++   L +  R+ V    S  E I+       +   K   LL+++ 
Sbjct: 221 TLLFSATMPYKVERLAREILTDLIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKMP 280

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     ++F  +K  V  + + L + GF V A+HG+ DQ SRM+ L  FK G   ++
Sbjct: 281 GMIDDGD-VLVFATKKARVDEVENQLNQHGFKVAALHGDKDQASRMETLQKFKSGIYHVL 339

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIKHID 358
           VA+D+AARGLDI  +  V NFD+    + +IHRIGRTGRAG + G A+TL+ +++ +   
Sbjct: 340 VATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKESRFAG 399

Query: 359 AI 360
            +
Sbjct: 400 EL 401


>gi|126696546|ref|YP_001091432.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9301]
 gi|126543589|gb|ABO17831.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9301]
          Length = 593

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 122/412 (29%), Positives = 201/412 (48%), Gaps = 13/412 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + G +  ++ ++++ GY  PTPIQ   IP ++   D+ G AQTGTGKTA+F LP+   
Sbjct: 53  FLEFGFNQSILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPL-IE 111

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                  +     ++                   ++ N     + GG  +  Q   L+R 
Sbjct: 112 KLTDNKELNAKVLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKRK 171

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGRI+DH  +G   + +I  LV+DEAD ML+MGF+  I+ I   +P  +Q +L
Sbjct: 172 VDVVVGTPGRIMDHIRQGTFKIKDINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVL 231

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM +E++ +++ +L +P  I + +     +         +    +   L       +
Sbjct: 232 FSATMPNEIRNIAKKYLNDPAEILIKS----VKKETQLISQKFLYVQRHHKLDALKRILE 287

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  IIF   K    ++  +LE  G +V  ++G+I Q  R   +   K+G I ++VA+
Sbjct: 288 LNNEGVIIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVAT 347

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  +  V N+D P   E Y HRIGRTGRAGR G+A   V   +   +  +E 
Sbjct: 348 DVAARGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNLREKHFLRNLEN 407

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
               K++ +N        P  KI I +    +  +   + S   D  ++N +
Sbjct: 408 STRTKIEEINI-------PSNKI-INEKRMEKLIDSFNESSLAKDENEENKA 451


>gi|238878350|gb|EEQ41988.1| ATP-dependent RNA helicase ROK1 [Candida albicans WO-1]
          Length = 640

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 119/453 (26%), Positives = 199/453 (43%), Gaps = 17/453 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F D+     ++ KV+  ++D  +V+PTPIQ ++IP+ L   D+   A TG+GKT +F++
Sbjct: 190 SFQDMIGRFHINKKVLSNLIDNEFVEPTPIQCESIPITLNNRDLIACAPTGSGKTLAFLI 249

Query: 58  PMLTIL-EKGRARVRMPRTLILEPTRELAAQVADNFEK--YGKNYNLTVALLIGGIPFEA 114
           P++  +  K  ++    R LI+ PT ELA Q+    E    G        L         
Sbjct: 250 PLVQQILSKNVSKNHGIRGLIISPTNELAVQIFQELEIITRGCKQINVAILSKQLASKLN 309

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
            N       D+++ TP R++D   +G + ++ IE L+IDEAD++ D GF      I +  
Sbjct: 310 NNIIKSSKYDIIVSTPLRLIDVVKQGNMDLSKIEQLIIDEADKLFDHGFAEQTDEILTHC 369

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              +      +       +   + +       +      A       +        K   
Sbjct: 370 TNPKIRKSIFSATIPSSVEEMAHSIMKDPLRIIIGHKEAASNTIDQKLVFTGNEQGKLLA 429

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           ++Q++Q  +     IIF         L H L     +V  +H     + R +++  FK G
Sbjct: 430 IRQMIQQGEFKPPIIIFLQSITRAKALFHELLYDRLNVDVVHAERTPKQREEVIKRFKNG 489

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I +++ +D+ ARG+D   V  V N+DVP  A+ Y+HRIGRTGR G+ GKA T   KED 
Sbjct: 490 DIWVLITTDVLARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDD 549

Query: 355 KHIDAIEKLIEKK------VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           K I  I  ++++         W+  D+  L+   EK  I  H   RK   I        +
Sbjct: 550 KAIKPILNVMKQSGCNDGYSQWME-DMGKLSKK-EKKQIKTHEIQRKK--ISTVPKVIKQ 605

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDAD 441
           ++K      +    ++ E   + +Q+   ND  
Sbjct: 606 KRKQRQDMIAASKRRKQESKQESKQESHSNDER 638


>gi|167894911|ref|ZP_02482313.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 7894]
          Length = 483

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 148/406 (36%), Positives = 221/406 (54%), Gaps = 28/406 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 44  TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 103

Query: 62  ILE-----------------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
                                     +    V  P  L+L PTRELA QV      YGK+
Sbjct: 104 RFAQLQKAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 163

Query: 99  YNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
                   ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 164 LRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 223

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I  I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+     +   I
Sbjct: 224 MLDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNI 283

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                    +  K    L   L     +   IIF   K +   L   L   GF   A+HG
Sbjct: 284 AQTVHYVDDRDHKDR--LLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHG 341

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 342 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 401

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381
           RAGR G A +LV   +   +  IE+ +     V+ + G      PP
Sbjct: 402 RAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEPRKAPP 447


>gi|167739208|ref|ZP_02411982.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 14]
          Length = 460

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 148/406 (36%), Positives = 221/406 (54%), Gaps = 28/406 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 41  TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 100

Query: 62  ILE-----------------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
                                     +    V  P  L+L PTRELA QV      YGK+
Sbjct: 101 RFAQLQKAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 160

Query: 99  YNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
                   ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 161 LRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 220

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I  I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+     +   I
Sbjct: 221 MLDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNI 280

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                    +  K    L   L     +   IIF   K +   L   L   GF   A+HG
Sbjct: 281 AQTVHYVDDRDHKDR--LLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHG 338

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 339 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 398

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381
           RAGR G A +LV   +   +  IE+ +     V+ + G      PP
Sbjct: 399 RAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEPRKAPP 444


>gi|134277372|ref|ZP_01764087.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
 gi|226198998|ref|ZP_03794561.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
 gi|134251022|gb|EBA51101.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
 gi|225929098|gb|EEH25122.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
          Length = 513

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 148/406 (36%), Positives = 221/406 (54%), Gaps = 28/406 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 41  TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 100

Query: 62  ILE-----------------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
                                     +    V  P  L+L PTRELA QV      YGK+
Sbjct: 101 RFAQLQKAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 160

Query: 99  YNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
                   ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 161 LRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 220

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I  I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+     +   I
Sbjct: 221 MLDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNI 280

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                    +  K    L   L     +   IIF   K +   L   L   GF   A+HG
Sbjct: 281 AQTVHYVDDRDHKDR--LLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHG 338

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 339 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 398

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381
           RAGR G A +LV   +   +  IE+ +     V+ + G      PP
Sbjct: 399 RAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEPRKAPP 444


>gi|21627812|emb|CAD37144.1| probable ATP-dependent RNA helicase [Aspergillus fumigatus]
          Length = 750

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 124/454 (27%), Positives = 209/454 (46%), Gaps = 24/454 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL LS      +  + Y   T IQ + I   L+  D+ G A+TG+GKT +F++P+L 
Sbjct: 48  SFSDLPLSEPTASGLASSHYKTLTDIQSRAISHALKGRDILGAAKTGSGKTLAFLVPVLE 107

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L + +         LIL PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L 
Sbjct: 108 NLYRKQWAEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLKEEQERLG 167

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +            N+++LV+DEADR+LD+GF   +  I   +P  RQT
Sbjct: 168 RMNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIIGHLPKERQT 227

Query: 181 LLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT T ++      +           T SS   +             K   L   + 
Sbjct: 228 LLFSATQTKKVSDLARLSLQDPEYVAVHETASSATPSKLQQHYVITPLPQKLDILWSFIR 287

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +  +     +   ++   V       + G  +  +HG   Q  R+ I++ F +    ++
Sbjct: 288 SNLKSKTMVFLSSGKQVRFVYESFRHLQPGIPLMHLHGRQKQGGRLDIVTRFSQSKHCVL 347

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            ++D+AARGLD P V  V   D P  A+ YIHR+GRT R  R G+A   +   + + +  
Sbjct: 348 FSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYEREGRAVLFLDPSEEEGM-- 405

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +++L +KKV            P+EKI+I  +      + +  ++  F   +  Y  QK+ 
Sbjct: 406 LKRLEQKKV------------PIEKINIKANKQQSIKDQL--QNMCFKDPELKYLGQKAF 451

Query: 420 IP------LKESEKISKLQQDIQENDADSLGFRG 447
           I       +++ ++I KL++   +  A SLG  G
Sbjct: 452 ISYVKSVYIQKDKEIFKLKELKLDEFAASLGLPG 485


>gi|83719456|ref|YP_442523.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
 gi|83653281|gb|ABC37344.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
          Length = 482

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 147/406 (36%), Positives = 221/406 (54%), Gaps = 28/406 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 13  TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 72

Query: 62  ILE-----------------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
                                     +    V  P  L+L PTRELA QV      YGK+
Sbjct: 73  RFAQLQKAQAQQPRAPREAQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 132

Query: 99  YNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
                   ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 133 LRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 192

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I  I +  P +RQT+LFSAT+  ++  ++   L++P+RIE+     +   I
Sbjct: 193 MLDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNI 252

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                    +  K    L   L     +   IIF   K +   L   L   GF   A+HG
Sbjct: 253 AQTVHYVDDRDHKDR--LLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFQSAALHG 310

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 311 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 370

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381
           RAGR G A +LV   +   +  IE+ +     V+ + G      PP
Sbjct: 371 RAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEPRKAPP 416


>gi|76809038|ref|YP_334004.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
 gi|76578491|gb|ABA47966.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
          Length = 529

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 148/406 (36%), Positives = 221/406 (54%), Gaps = 28/406 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 57  TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 116

Query: 62  ILE-----------------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
                                     +    V  P  L+L PTRELA QV      YGK+
Sbjct: 117 RFAQLQKAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 176

Query: 99  YNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
                   ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 177 LRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 236

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I  I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+     +   I
Sbjct: 237 MLDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNI 296

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                    +  K    L   L     +   IIF   K +   L   L   GF   A+HG
Sbjct: 297 AQTVHYVDDRDHKDR--LLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHG 354

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 355 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 414

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381
           RAGR G A +LV   +   +  IE+ +     V+ + G      PP
Sbjct: 415 RAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEPRKAPP 460


>gi|126439983|ref|YP_001059500.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
 gi|126219476|gb|ABN82982.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
          Length = 514

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 148/406 (36%), Positives = 221/406 (54%), Gaps = 28/406 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 43  TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 102

Query: 62  ILE-----------------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
                                     +    V  P  L+L PTRELA QV      YGK+
Sbjct: 103 RFAQLQKAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 162

Query: 99  YNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
                   ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 163 LRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 222

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I  I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+     +   I
Sbjct: 223 MLDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNI 282

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                    +  K    L   L     +   IIF   K +   L   L   GF   A+HG
Sbjct: 283 AQTVHYVDDRDHKDR--LLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHG 340

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 341 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 400

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381
           RAGR G A +LV   +   +  IE+ +     V+ + G      PP
Sbjct: 401 RAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEPRKAPP 446


>gi|126453899|ref|YP_001066782.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
 gi|237812839|ref|YP_002897290.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
 gi|242315830|ref|ZP_04814846.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
 gi|254179293|ref|ZP_04885892.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1655]
 gi|254189321|ref|ZP_04895832.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pasteur 52237]
 gi|254198045|ref|ZP_04904467.1| DEAD/DEAH box helicase [Burkholderia pseudomallei S13]
 gi|126227541|gb|ABN91081.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
 gi|157937000|gb|EDO92670.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pasteur 52237]
 gi|169654786|gb|EDS87479.1| DEAD/DEAH box helicase [Burkholderia pseudomallei S13]
 gi|184209833|gb|EDU06876.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1655]
 gi|237504437|gb|ACQ96755.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
 gi|242139069|gb|EES25471.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
          Length = 513

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 148/406 (36%), Positives = 221/406 (54%), Gaps = 28/406 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 41  TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 100

Query: 62  ILE-----------------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
                                     +    V  P  L+L PTRELA QV      YGK+
Sbjct: 101 RFAQLQKAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 160

Query: 99  YNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
                   ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 161 LRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 220

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I  I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+     +   I
Sbjct: 221 MLDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNI 280

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                    +  K    L   L     +   IIF   K +   L   L   GF   A+HG
Sbjct: 281 AQTVHYVDDRDHKDR--LLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHG 338

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 339 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 398

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381
           RAGR G A +LV   +   +  IE+ +     V+ + G      PP
Sbjct: 399 RAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEPRKAPP 444


>gi|70992287|ref|XP_750992.1| DEAD box  RNA helicase (Hca4) [Aspergillus fumigatus Af293]
 gi|74670609|sp|Q4WM60|DBP4_ASPFU RecName: Full=ATP-dependent RNA helicase dbp4
 gi|66848625|gb|EAL88954.1| DEAD box  RNA helicase (Hca4), putative [Aspergillus fumigatus
           Af293]
 gi|159124561|gb|EDP49679.1| DEAD box RNA helicase (Hca4), putative [Aspergillus fumigatus
           A1163]
          Length = 787

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 124/454 (27%), Positives = 209/454 (46%), Gaps = 24/454 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL LS      +  + Y   T IQ + I   L+  D+ G A+TG+GKT +F++P+L 
Sbjct: 48  SFSDLPLSEPTASGLASSHYKTLTDIQSRAISHALKGRDILGAAKTGSGKTLAFLVPVLE 107

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L + +         LIL PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L 
Sbjct: 108 NLYRKQWAEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLKEEQERLG 167

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +            N+++LV+DEADR+LD+GF   +  I   +P  RQT
Sbjct: 168 RMNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIIGHLPKERQT 227

Query: 181 LLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT T ++      +           T SS   +             K   L   + 
Sbjct: 228 LLFSATQTKKVSDLARLSLQDPEYVAVHETASSATPSKLQQHYVITPLPQKLDILWSFIR 287

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +  +     +   ++   V       + G  +  +HG   Q  R+ I++ F +    ++
Sbjct: 288 SNLKSKTMVFLSSGKQVRFVYESFRHLQPGIPLMHLHGRQKQGGRLDIVTRFSQSKHCVL 347

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            ++D+AARGLD P V  V   D P  A+ YIHR+GRT R  R G+A   +   + + +  
Sbjct: 348 FSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYEREGRAVLFLDPSEEEGM-- 405

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +++L +KKV            P+EKI+I  +      + +  ++  F   +  Y  QK+ 
Sbjct: 406 LKRLEQKKV------------PIEKINIKANKQQSIKDQL--QNMCFKDPELKYLGQKAF 451

Query: 420 IP------LKESEKISKLQQDIQENDADSLGFRG 447
           I       +++ ++I KL++   +  A SLG  G
Sbjct: 452 ISYVKSVYIQKDKEIFKLKELKLDEFAASLGLPG 485


>gi|53719796|ref|YP_108782.1| putative ATP-dependent RNA helicase [Burkholderia pseudomallei
           K96243]
 gi|53724110|ref|YP_103224.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
 gi|67639288|ref|ZP_00438162.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
 gi|121599488|ref|YP_993402.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
 gi|124385746|ref|YP_001029162.1| putative ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC
           10229]
 gi|126448376|ref|YP_001080910.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
 gi|166999673|ref|ZP_02265508.1| DEAD/DEAH box helicase [Burkholderia mallei PRL-20]
 gi|167903298|ref|ZP_02490503.1| ATP-dependent RNA helicase [Burkholderia pseudomallei NCTC 13177]
 gi|217421948|ref|ZP_03453452.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
 gi|254177947|ref|ZP_04884602.1| DEAD/DEAH box helicase [Burkholderia mallei ATCC 10399]
 gi|254200174|ref|ZP_04906540.1| DEAD/DEAH box helicase [Burkholderia mallei FMH]
 gi|254206512|ref|ZP_04912864.1| DEAD/DEAH box helicase [Burkholderia mallei JHU]
 gi|254257950|ref|ZP_04949004.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
 gi|254297179|ref|ZP_04964632.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 406e]
 gi|254358076|ref|ZP_04974349.1| DEAD/DEAH box helicase [Burkholderia mallei 2002721280]
 gi|52210210|emb|CAH36189.1| putative ATP-dependent RNA helicase [Burkholderia pseudomallei
           K96243]
 gi|52427533|gb|AAU48126.1| ATP-dependent RNA helicase RhlE, putative [Burkholderia mallei ATCC
           23344]
 gi|121228298|gb|ABM50816.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
 gi|124293766|gb|ABN03035.1| putative ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC
           10229]
 gi|126241246|gb|ABO04339.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
 gi|147749770|gb|EDK56844.1| DEAD/DEAH box helicase [Burkholderia mallei FMH]
 gi|147753955|gb|EDK61020.1| DEAD/DEAH box helicase [Burkholderia mallei JHU]
 gi|148027203|gb|EDK85224.1| DEAD/DEAH box helicase [Burkholderia mallei 2002721280]
 gi|157807478|gb|EDO84648.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 406e]
 gi|160698986|gb|EDP88956.1| DEAD/DEAH box helicase [Burkholderia mallei ATCC 10399]
 gi|217395690|gb|EEC35708.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
 gi|238519823|gb|EEP83289.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
 gi|243064323|gb|EES46509.1| DEAD/DEAH box helicase [Burkholderia mallei PRL-20]
 gi|254216639|gb|EET06023.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
          Length = 516

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 148/406 (36%), Positives = 221/406 (54%), Gaps = 28/406 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 44  TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 103

Query: 62  ILE-----------------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
                                     +    V  P  L+L PTRELA QV      YGK+
Sbjct: 104 RFAQLQKAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 163

Query: 99  YNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
                   ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 164 LRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 223

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I  I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+     +   I
Sbjct: 224 MLDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNI 283

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                    +  K    L   L     +   IIF   K +   L   L   GF   A+HG
Sbjct: 284 AQTVHYVDDRDHKDR--LLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHG 341

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 342 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 401

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381
           RAGR G A +LV   +   +  IE+ +     V+ + G      PP
Sbjct: 402 RAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEPRKAPP 447


>gi|302318882|ref|NP_001032894.2| ATP-dependent RNA helicase DDX42 [Danio rerio]
          Length = 908

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 135/388 (34%), Positives = 218/388 (56%), Gaps = 6/388 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + +P+ L   D  GIA+TG+GKTA+F+ P+  
Sbjct: 256 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILV 315

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  +I+ PTREL  Q+    +++GK Y L    + GG     Q K L
Sbjct: 316 HIMDQKELEPGEGPIAVIVCPTRELCQQIHAECKRFGKAYGLRSVAVYGGGSMWEQAKAL 375

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQ
Sbjct: 376 QEGAEIVVCTPGRLIDHVKKKATSLQRVTFLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 435

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P R+         E I        +   K   L ++L+
Sbjct: 436 TLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQIVEVLQSGQDKWGWLTRRLV 495

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +      + ++F  +K N   L  +L ++G+S+  +HG++DQ  R K++++FK+  + ++
Sbjct: 496 EFTSAG-SVLVFVTKKANCEELATNLIQEGYSLGLLHGDMDQSERNKVIADFKKKNLPVL 554

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      
Sbjct: 555 VATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTTKDTSFAGD 614

Query: 360 IEKLIEKKVDWLNGDLSSL---NPPLEK 384
           + + +E     ++ DL  L   NP   K
Sbjct: 615 LVRNLEGANQSVSKDLLDLAMQNPWFRK 642


>gi|257138731|ref|ZP_05586993.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
          Length = 515

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 147/406 (36%), Positives = 221/406 (54%), Gaps = 28/406 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 46  TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 105

Query: 62  ILE-----------------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
                                     +    V  P  L+L PTRELA QV      YGK+
Sbjct: 106 RFAQLQKAQAQQPRAPREAQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 165

Query: 99  YNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
                   ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 166 LRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 225

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I  I +  P +RQT+LFSAT+  ++  ++   L++P+RIE+     +   I
Sbjct: 226 MLDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNI 285

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                    +  K    L   L     +   IIF   K +   L   L   GF   A+HG
Sbjct: 286 AQTVHYVDDRDHKDR--LLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFQSAALHG 343

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 344 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 403

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381
           RAGR G A +LV   +   +  IE+ +     V+ + G      PP
Sbjct: 404 RAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEPRKAPP 449


>gi|167619557|ref|ZP_02388188.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
          Length = 454

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 147/406 (36%), Positives = 221/406 (54%), Gaps = 28/406 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 46  TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 105

Query: 62  ILE-----------------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
                                     +    V  P  L+L PTRELA QV      YGK+
Sbjct: 106 RFAQLQKAQAQQPRAPREAQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 165

Query: 99  YNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
                   ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 166 LRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 225

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I  I +  P +RQT+LFSAT+  ++  ++   L++P+RIE+     +   I
Sbjct: 226 MLDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNI 285

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                    +  K    L   L     +   IIF   K +   L   L   GF   A+HG
Sbjct: 286 AQTVHYVDDRDHKDR--LLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFQSAALHG 343

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 344 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 403

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381
           RAGR G A +LV   +   +  IE+ +     V+ + G      PP
Sbjct: 404 RAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEPRKAPP 449


>gi|167581446|ref|ZP_02374320.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
          Length = 517

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 147/406 (36%), Positives = 221/406 (54%), Gaps = 28/406 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 48  TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 107

Query: 62  ILE-----------------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
                                     +    V  P  L+L PTRELA QV      YGK+
Sbjct: 108 RFAQLQKAQAQQPRAPREAQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 167

Query: 99  YNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
                   ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 168 LRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 227

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I  I +  P +RQT+LFSAT+  ++  ++   L++P+RIE+     +   I
Sbjct: 228 MLDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNI 287

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                    +  K    L   L     +   IIF   K +   L   L   GF   A+HG
Sbjct: 288 AQTVHYVDDRDHKDR--LLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFQSAALHG 345

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 346 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 405

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381
           RAGR G A +LV   +   +  IE+ +     V+ + G      PP
Sbjct: 406 RAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEPRKAPP 451


>gi|145323964|ref|NP_001077571.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|332191920|gb|AEE30041.1| DEAD-box ATP-dependent RNA helicase 42 [Arabidopsis thaliana]
          Length = 828

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 125/381 (32%), Positives = 197/381 (51%), Gaps = 7/381 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--L 60
           +   GL+ K++  +    Y KP PIQ + +P+++   D  G+A+TG+GKT  FVLPM   
Sbjct: 193 WHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRH 252

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +        P  L++ PTREL  Q+  +  K+ K   +    + GG     Q  +L+
Sbjct: 253 IKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELK 312

Query: 121 RGADVLICTPGRILDHFNR---GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RG ++++CTPGR++D           +  +  LV+DEADRM DMGF P I  I   +   
Sbjct: 313 RGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPE 372

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT   +++ ++   L  P  I+V   S   + I           S +   L +
Sbjct: 373 RQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLV--EVRPESDRFLRLLE 430

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL         ++F   ++    L   + K  +   ++HG  DQ  R   +S+FK     
Sbjct: 431 LLGEWSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCN 490

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L++A+ +AARGLD+ ++  V NFD PN  E+Y+HR+GRTGRAGR G A T ++++D K+ 
Sbjct: 491 LLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYA 550

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K +E     +  DL +L
Sbjct: 551 PDLVKALELSEQPVPDDLKAL 571


>gi|15218071|ref|NP_173516.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|108861895|sp|Q8H0U8|RH42_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 42
 gi|4836896|gb|AAD30599.1|AC007369_9 Similar to RNA helicases [Arabidopsis thaliana]
 gi|332191919|gb|AEE30040.1| DEAD-box ATP-dependent RNA helicase 42 [Arabidopsis thaliana]
          Length = 1166

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 125/381 (32%), Positives = 197/381 (51%), Gaps = 7/381 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--L 60
           +   GL+ K++  +    Y KP PIQ + +P+++   D  G+A+TG+GKT  FVLPM   
Sbjct: 531 WHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRH 590

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +        P  L++ PTREL  Q+  +  K+ K   +    + GG     Q  +L+
Sbjct: 591 IKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELK 650

Query: 121 RGADVLICTPGRILDHFNR---GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RG ++++CTPGR++D           +  +  LV+DEADRM DMGF P I  I   +   
Sbjct: 651 RGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPE 710

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT   +++ ++   L  P  I+V   S   + I           S +   L +
Sbjct: 711 RQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLV--EVRPESDRFLRLLE 768

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL         ++F   ++    L   + K  +   ++HG  DQ  R   +S+FK     
Sbjct: 769 LLGEWSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCN 828

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L++A+ +AARGLD+ ++  V NFD PN  E+Y+HR+GRTGRAGR G A T ++++D K+ 
Sbjct: 829 LLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYA 888

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K +E     +  DL +L
Sbjct: 889 PDLVKALELSEQPVPDDLKAL 909


>gi|326928431|ref|XP_003210383.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like
           [Meleagris gallopavo]
          Length = 604

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 127/389 (32%), Positives = 196/389 (50%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G  +PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 164 SFKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 223

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 224 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALCIGGM 283

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + ++ G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 284 SVKEQMETIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 343

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     +      A       V       +
Sbjct: 344 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPITINVGRAGAASLDVVQEVEYVKE 399

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 400 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 459

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F++G   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 460 FRDGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 519

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 520 KACDESVLMDLKALLLEAKQKVPPVLQVL 548


>gi|220681310|gb|ACL80031.1| vasa-like protein [Bombyx mori]
          Length = 468

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 129/376 (34%), Positives = 202/376 (53%), Gaps = 14/376 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L   V+  VL AGY KPTPIQ   IP+++   D+ G AQTG+GKTA+F++P++ 
Sbjct: 48  SFKTANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIIN 107

Query: 62  ILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +L +             P+ +I+ PTREL  Q+ +   K+     L VA+  GG     Q
Sbjct: 108 MLLQDPKDLISENGCAQPQVIIVSPTRELTLQIFNEARKFSYGSVLKVAVAYGGTAVRHQ 167

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              + RG  +L+ TPGR+ D   R ++   ++  +V+DEADRMLDMGF+P I+ +     
Sbjct: 168 GDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSIEKMMLHPT 227

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTL+FSAT  +++Q ++  FL N   + V      +  +E  F+       + 
Sbjct: 228 MVETTKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRN 287

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                + L  ++  K  ++F   K+N   +   L +Q     +IHG+  QR R + L NF
Sbjct: 288 S---LKQLIEENDGKRILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNF 344

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-A 350
           K G   ++VA+ +AARGLDI +V  V N+D+P   + Y+HRIGRTGR G  GKA +   +
Sbjct: 345 KSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFYDS 404

Query: 351 KEDIKHIDAIEKLIEK 366
            +D+  +  + K++ +
Sbjct: 405 DQDLALVADLSKILRQ 420


>gi|153801095|ref|ZP_01955681.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-3]
 gi|124123328|gb|EAY42071.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-3]
          Length = 460

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 139/402 (34%), Positives = 225/402 (55%), Gaps = 9/402 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L L P+++  +   G+   TPIQ +++P +L+  DV G  +TG+GKTA+F L +L+
Sbjct: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+    L+L PTRELA QVA +    G+  +    L +  G+P   Q   LE
Sbjct: 65  NLNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH ++ ++ ++ +  LV+DEADRML+MGF   ++ I +  P  RQT
Sbjct: 122 HGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++++++   N   I+V     T +T          + S       + L 
Sbjct: 182 LLFSATYPTSIEQIAQSVTHNALMIKVEA---THDTSSIRQYFYKVEGSAARDEALETLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + ++FCN K+ V N+  +L + GFSV  +HG+++QR R + L  F   +I ++V
Sbjct: 239 LHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFN+D+    E ++HRIGRTGRAG  G AF+  +  +   +  I
Sbjct: 299 ATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQI 358

Query: 361 EKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           ++ ++  ++   L    +   P    +   Q +  +K+   P
Sbjct: 359 DEYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRP 400


>gi|83593250|ref|YP_427002.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
 gi|83576164|gb|ABC22715.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
          Length = 393

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 149/371 (40%), Positives = 220/371 (59%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA L L   +  AV   GY   TPIQ   IP  L   DV GIAQTGTGKTASFVLP+L 
Sbjct: 3   EFASLDLIEPLARAVTALGYTVATPIQAGAIPPQLLGRDVLGIAQTGTGKTASFVLPLLQ 62

Query: 62  ILEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKK 118
            L K         PR LIL PTRELA Q+ ++    G+    +   +++GG+    Q + 
Sbjct: 63  RLTKDPQPRVPGRPRALILTPTRELAQQITESIGDLGRTLSAIRCGVVVGGVDILRQTRM 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++RG ++L+ TPGR+ D  NR  + +  IE+LV+DEADRMLDMGF P ++ I +++P  R
Sbjct: 123 VQRGLEILVATPGRLQDLMNRKAVDLRAIEVLVLDEADRMLDMGFAPAVKKIAAVLPRKR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT++FSAT+ +E+  +  + + +P R+EV   +S A  I+   +       +K  L    
Sbjct: 183 QTVMFSATLPNEVTGLVASLMNDPVRVEVAPAASVANRIDQRVLFVEQTNKRKLLLDLL- 241

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                 ++  I+F   K     L   L + G     IHGN  Q +R + L++FK G ++ 
Sbjct: 242 -GDARKVERAIVFTRTKHGANKLGIFLLEYGVKSDVIHGNKSQGARQRALNDFKSGKVRA 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+  + HV NFD+PN  E+Y+HRIGRT RAG  G A +L A +++ ++ 
Sbjct: 301 LVATDIAARGIDVDGITHVINFDLPNEPESYVHRIGRTARAGAAGIALSLCAPQEMPYLK 360

Query: 359 AIEKLIEKKVD 369
           AIEK+I+ ++D
Sbjct: 361 AIEKVIKSRID 371


>gi|206564651|ref|YP_002235414.1| putative ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia
           J2315]
 gi|198040691|emb|CAR56677.1| putative ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia
           J2315]
          Length = 484

 Score =  150 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 152/370 (41%), Positives = 218/370 (58%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  +    Y  PTP+Q K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 1   MSFASLGLIEPLLHNLQGLNYQTPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLL 60

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +    V   R    +L PTRELA QV  +F +YGK  +L      GG+    Q  K
Sbjct: 61  QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMK 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  +  + ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT +DE++ ++   L+NP  I V+ P++TA  I+   V    +      +    
Sbjct: 181 QTLLFSATFSDEIRTMAAGILRNPVDISVSAPNATASKIKQWVVTVDKRNKPGLFMHL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +Q+  ++ ++F   +  V  L   LEK G++V  IHG+  Q +R++ L  FK G +Q+
Sbjct: 239 -VAQNKWEHALVFVKTRNGVDYLAVMLEKAGYAVDTIHGDKPQPARLRALERFKAGEVQM 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357

Query: 359 AIEKLIEKKV 368
           AIE LI + +
Sbjct: 358 AIEALIRQTL 367


>gi|67516615|ref|XP_658193.1| hypothetical protein AN0589.2 [Aspergillus nidulans FGSC A4]
 gi|74627495|sp|Q5BFU1|DBP4_EMENI RecName: Full=ATP-dependent RNA helicase dbp4
 gi|40747532|gb|EAA66688.1| hypothetical protein AN0589.2 [Aspergillus nidulans FGSC A4]
 gi|259489143|tpe|CBF89171.1| TPA: ATP-dependent RNA helicase dbp4 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5BFU1] [Aspergillus
           nidulans FGSC A4]
          Length = 812

 Score =  150 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 126/455 (27%), Positives = 215/455 (47%), Gaps = 26/455 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL +S   +  +  + +   T IQ + I   L+  DV G A+TG+GKT +F++P+L 
Sbjct: 49  SFSDLPISEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPILE 108

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L + +         LI+ PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L 
Sbjct: 109 NLYRKQWSDHDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLKEEQERLG 168

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +            N+++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 169 RMNILVCTPGRMLQHLDQTAFFETYNLQMLVLDEADRIMDMGFQKTVDAIIGHLPPERQT 228

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT T ++  ++   LQ+P+ + V+  +S+A   +           +K         
Sbjct: 229 LLFSATQTKKVSDLARLSLQDPEYVAVHEAASSATPSKLQQHYVVTPLPQKL-DTLWSFI 287

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQL 298
             +     I+F +  K V  +  S       +    +HG   Q  R+ I + F +    +
Sbjct: 288 RSNLKSKTIVFMSSGKQVRFVYESFRHMQPGIPLLHLHGRQKQGGRLDITTRFSQAQHAV 347

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + ++D+AARGLD P V  V   D P  A+ YIHR+GRT R  R G+A   +   + K + 
Sbjct: 348 LFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEKGM- 406

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            + +L +K+V             +E+I++  +      N +  ++  F   +  Y  QK+
Sbjct: 407 -LRRLEQKRV------------TVERINVRANKQQSIKNQL--QNMCFKDPELKYLGQKA 451

Query: 419 HIPLKESEKISK------LQQDIQENDADSLGFRG 447
            I   +S  I K      L++   ++ A SLG  G
Sbjct: 452 FISYVKSVYIQKDKETFNLKELKLDDFAASLGLPG 486


>gi|322794838|gb|EFZ17785.1| hypothetical protein SINV_13785 [Solenopsis invicta]
          Length = 586

 Score =  150 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 139/396 (35%), Positives = 205/396 (51%), Gaps = 19/396 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L+  +  ++  AGY KPTP+Q   IP++++R DV   AQTG+GKTA+F++P+L 
Sbjct: 170 SFDEVKLTEIIKNSIALAGYDKPTPVQKYAIPIIIERRDVMACAQTGSGKTAAFLVPILN 229

Query: 62  ILEKGRARVRMPRTL------------ILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            + +   R   P+              +L PTRELA Q+ D   K+     +  A++ GG
Sbjct: 230 QIYESGPRPPPPQANSSSRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGG 289

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q ++L+RG  +L+ TPGR++D   RGK+ ++N   LV+DEADRMLDMGF P I+ 
Sbjct: 290 SNIVDQMRELDRGCHLLVATPGRLVDMLGRGKIGLHNCRFLVLDEADRMLDMGFEPQIRR 349

Query: 170 ITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I            QTL+FSAT   E+Q ++ +FL N   + V    ST+E I    V   
Sbjct: 350 IVQEDNMPPTGERQTLMFSATFPKEIQMLARDFLSNYIFLAVGRVGSTSENITQKIVWVE 409

Query: 226 AQYSKKCALLQQLLQSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
               +   L      +          ++F   KK    L   L   G+ V +IHG+  QR
Sbjct: 410 EHDKRSYLLDLLQASNFSDPTAESLTLVFVETKKGADMLEEYLASMGYPVTSIHGDRTQR 469

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R   L  F+ G   ++VA+ +AARGLDIP V HV NFD+P   E Y+HRIGRTGR G  
Sbjct: 470 EREDALRRFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGNL 529

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +    ++   +  +  L+ +    L   L  +
Sbjct: 530 GLATSFFNHKNHNLVRDLVSLLIEANQELPSWLDDM 565


>gi|224085049|ref|XP_002307470.1| predicted protein [Populus trichocarpa]
 gi|222856919|gb|EEE94466.1| predicted protein [Populus trichocarpa]
          Length = 510

 Score =  150 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 137/403 (33%), Positives = 221/403 (54%), Gaps = 6/403 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LSP V   +   GY  PTPIQ KT+PL+L   DV  +A+TG+GKTA+F+LPML  
Sbjct: 27  FESLNLSPNVFRGIKRKGYRVPTPIQRKTMPLILAGIDVVAMARTGSGKTAAFLLPMLEK 86

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++   +    R LIL PTR+LA Q     ++ G+  +L ++LL+GG   E+Q + L + 
Sbjct: 87  LKQHLPQSG-VRALILSPTRDLALQTLKFTKELGRFTDLRISLLVGGDRMESQFEDLSQN 145

Query: 123 ADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR++ H      + +  +E +V DEAD +  MGF   +  I + +   RQTL
Sbjct: 146 PDIIIATPGRLMHHLSEIDDMSLKTVEYVVFDEADSLFGMGFAEQLHKILTQLSENRQTL 205

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L + ++  L++P+ + ++  +  +  ++  F  T  Q  K  AL+  +   
Sbjct: 206 LFSATLPSALAEFAKAGLRDPQLVRLDVDTKISPDLKTVF-FTLRQEEKYAALIYLIRDH 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T +  +IF + K +V  L     + G      +G++DQ +R   +S F+     L++ 
Sbjct: 265 ISTDQQTLIFVSTKHHVEFLNVLFREDGIEPSVCYGDMDQDARKIHVSRFRARKTMLLIV 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP + +V N+D P + + ++HR+GR  RAGR G AF+ V  ED+ ++  + 
Sbjct: 325 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRVARAGRTGTAFSFVTSEDMPYLLDLH 384

Query: 362 KLIEKKVDWLNGD---LSSLNPPLEKIDIAQHNHARKNNPIPQ 401
             + K V     +   L  ++  + KID A  N        PQ
Sbjct: 385 LFLSKPVKAAPTEEEVLQDIDGVMNKIDQAFANGETVYGRFPQ 427


>gi|5669638|gb|AAD46404.1|AF096248_1 ethylene-responsive RNA helicase [Solanum lycopersicum]
          Length = 474

 Score =  150 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 114/379 (30%), Positives = 182/379 (48%), Gaps = 30/379 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+G    V+  +  AG+ +PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP + 
Sbjct: 97  SFHDVGFPDYVLQEIEKAGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTIAYLLPAIV 156

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA Q+     K+G +  +    + GG+P   Q + L
Sbjct: 157 HVNAQPILDHGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKNTCIYGGVPKGPQVRDL 216

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G +++I TPGR++D        +  + I V+DEADRMLDMGF P I+   S  P  + 
Sbjct: 217 QKGVEIVIATPGRLIDMLESNHTNLRRVTI-VLDEADRMLDMGFEPQIRKCISDTPDRQT 275

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
                                          ++  + + H   A   +   +       L
Sbjct: 276 LYW---------------------------SATWPKNVNHVSSACGNRLGDQKYNKLVKL 308

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + I+     K    +   L   G+   +IHG+  Q  R  +LS FK G   +M
Sbjct: 309 LEDIMDGSRILIFRTLKGCDQVTRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 368

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD+ DV  V N+D P   E+Y+HRIGRTGRAG  G A+T     + +    
Sbjct: 369 TATDVAARGLDVKDVKFVINYDFPGSLEDYVHRIGRTGRAGASGTAYTFFTAANARFAKD 428

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +  ++E+    ++ +L+ +
Sbjct: 429 LVNILEEAGQKVSPELAKM 447


>gi|195452372|ref|XP_002073325.1| GK14071 [Drosophila willistoni]
 gi|194169410|gb|EDW84311.1| GK14071 [Drosophila willistoni]
          Length = 802

 Score =  150 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 135/397 (34%), Positives = 206/397 (51%), Gaps = 20/397 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L+  +   V  A Y KPTP+Q   IP+++   D+   AQTG+GKTA+F+LP+L 
Sbjct: 297 SFDDVQLTEIIRNNVNLARYDKPTPVQKYAIPIIISGRDLMACAQTGSGKTAAFLLPILN 356

Query: 62  ILEKG------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            + +               R + P  L+L PTRELA Q+ +  +K+     +  A+L GG
Sbjct: 357 QMYEHGISSPPQSNRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGG 416

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q ++L+RG  +++ TPGR+ D   RGK+ + NI  LV+DEADRMLDMGF P I+ 
Sbjct: 417 NNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRR 476

Query: 170 ITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I   +           +FSAT   ++Q+++ +FL N   + V    ST+E I    +  Y
Sbjct: 477 IVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVY 536

Query: 226 AQYSKKCALLQ----QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
            Q  +   L      +           +IF   KK   +L   L +    V +IHG+  Q
Sbjct: 537 EQDKRSYLLDLLSSIRDGPEYCKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQ 596

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           + R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P+  E Y+HRIGRTGR G 
Sbjct: 597 KEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGN 656

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            G A +   +++      + +L+ +    +   L  +
Sbjct: 657 LGVATSFFNEKNRNICSDLLELLIETKQEIPNFLEDM 693


>gi|320168199|gb|EFW45098.1| DEAD box polypeptide 49 [Capsaspora owczarzaki ATCC 30864]
          Length = 611

 Score =  150 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 133/421 (31%), Positives = 206/421 (48%), Gaps = 12/421 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL   +V      G   PT IQ+ TI  VL   +V G A+TG+GKTA+F LP+L 
Sbjct: 179 TFAALGLKQWLVKQCEAMGLKHPTDIQVNTIKHVLAGRNVIGCAKTGSGKTAAFALPILH 238

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN-KKLE 120
            L         P  ++L PTRELA Q+A+ F   GK  NL  A+++GG+    Q+    +
Sbjct: 239 RLSD---DPYGPFAVVLTPTRELAFQIAEQFRALGKGINLREAVVVGGVDMMQQSLVLAK 295

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++           +  +L +     LV+DEADR+L+ GF P +  I +     ++ 
Sbjct: 296 RPHVIIATPGRLADHLNSNSQLSLARARFLVLDEADRLLEEGFSPDLNRILAAASNPQRQ 355

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSAT+T  +  +    + N    E  +      T+           +K        L
Sbjct: 356 TLLFSATITKNIANLESMSMSNVVHYETKSSV---ATVTTLDQRFVITPAKVKDCYLSYL 412

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   K+ I+F +  +N   +   ++  GF   A+H  + Q  R+  L+ FK   + ++
Sbjct: 413 LGQHEDKSIIVFTSSCRNCETITRMIKALGFRCVALHSEMSQSMRLGSLAKFKSSIVNIL 472

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLDIP V  V N DVP  + +Y+HR+GRT RAGR G A T V + DI+ I  
Sbjct: 473 IATDVASRGLDIPTVKLVINNDVPRTSTDYVHRVGRTARAGRGGMAVTFVTQYDIELIQH 532

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IE  I+ K+  L  D  +    L  +  A+     +   + +++ G +RR++N   Q  H
Sbjct: 533 IESKIKVKLSALTMDEDAALVNLNDVTTAKRTAIME---MAEENFG-ERRRRNLEKQDMH 588

Query: 420 I 420
            
Sbjct: 589 R 589


>gi|226510036|ref|NP_001147911.1| ATP-dependent RNA helicase DDX23 [Zea mays]
 gi|195614524|gb|ACG29092.1| ATP-dependent RNA helicase DDX23 [Zea mays]
          Length = 736

 Score =  150 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 133/424 (31%), Positives = 217/424 (51%), Gaps = 32/424 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +++  L  +++ A+  AGY KP+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPML+
Sbjct: 316 KWSESKLGTELLRAIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLS 375

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + +            P  +++ PTRELA Q+ +   K+     L V  ++GG   E Q 
Sbjct: 376 YITRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGLKVVSIVGGQSIEEQG 435

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY---------- 166
            K+ +G +++I TPGR+LD   R   ++N    +V+DEADRM+DMGF P           
Sbjct: 436 FKIRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 495

Query: 167 -------IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
                             R T +FSATM   +++++  +L+NP  + + T     +  + 
Sbjct: 496 SNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGT---AGKATDL 552

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                      +     Q + +    K  I+FCN KK        L+K GF V  +HG  
Sbjct: 553 ITQNVIMVKESEKMPRLQKILTDLGDKTAIVFCNTKKTADMRAKDLDKAGFRVTTLHGGK 612

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q  R   L  F+     ++VA+D+A RG+DIPDV HV N+++P+  + Y HRIGRTGRA
Sbjct: 613 SQDQREISLDGFRNRRFNVLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGRA 672

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           G+ G A + +  E+      +++++      +  + S + P L + + ++       +  
Sbjct: 673 GKKGVATSFLTYENTDIFFDLKQML------MQSN-SPVPPELARHEASKFKPGSIPDRP 725

Query: 400 PQKS 403
           P+++
Sbjct: 726 PRRN 729


>gi|161501867|ref|NP_762119.2| ATP-dependent RNA helicase DbpA [Vibrio vulnificus CMCP6]
 gi|319999566|gb|AAO07109.2| ATP-dependent RNA helicase DbpA [Vibrio vulnificus CMCP6]
          Length = 459

 Score =  150 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 138/380 (36%), Positives = 221/380 (58%), Gaps = 9/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P+++  +   GY + TPIQ +++PLVL   DV G  +TG+GKTA+F L +L+ 
Sbjct: 5   FNTLSLKPELLSTLDTLGYTEMTPIQAQSLPLVLDGKDVIGQGKTGSGKTATFALGLLSN 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA       +  +    L +  G+P   Q   LE 
Sbjct: 65  LNVSRFRVQ---SLVLCPTRELADQVATEIRTLARGIHNIKVLTLCGGMPMGPQILSLEH 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH ++G++ +  +  LV+DEADRML+MGF   I  I  + P  RQTL
Sbjct: 122 GAHILVGTPGRILDHLSKGRIDLAELNTLVLDEADRMLEMGFQDAIDAIIDVAPTQRQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  ++++ ++   +QNP+ ++V +   T +           + +++     + L  
Sbjct: 182 LFSATFPEQIETIASKVMQNPEMVKVES---THQKSTIEQRFYQLENTEERDNALEALLL 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ ++FCN KK V N+   L  + FSV  +HG+++QR R + L+ F   +I ++VA
Sbjct: 239 THRPESTVVFCNTKKEVQNVTDELNHRRFSVIELHGDMEQRERERALTMFANKSISILVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  V NF++    E ++HRIGRTGRAG  G A +  +++++  ++ IE
Sbjct: 299 TDVAARGLDVDNLDAVINFELSRDPEVHVHRIGRTGRAGAKGIAISFFSEKELYRVERIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPP 381
           + +   +D     L     P
Sbjct: 359 EYMG--IDVHPAKLPQPENP 376


>gi|154315003|ref|XP_001556825.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
 gi|160358659|sp|A6RW56|RRP3_BOTFB RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|150848381|gb|EDN23574.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
          Length = 486

 Score =  150 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 134/430 (31%), Positives = 226/430 (52%), Gaps = 9/430 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 61  SFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQ 120

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    L+L PTRELA Q++  FE  G    +  A+++GG+    Q+  L +
Sbjct: 121 AL---LDKPQPLFGLVLAPTRELAYQISQQFEALGSVIRVKCAVIVGGMDMVPQSIALGK 177

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +    N     + +++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 178 KPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERRT 237

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT++ +++ +    L++P R+ +++      +             K        L 
Sbjct: 238 YLFSATISSKVESLQRASLKDPLRVSISSNKYQTVSTLIQNYIFIPLIHK--DTYLIYLL 295

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ IIF         +   L   GF    +HG + Q SR+  L+ F+ G+ +++V
Sbjct: 296 NEFAGQSAIIFTRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGSREILV 355

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V N+DVP  ++ YIHR+GRT RAG+ G A ++V + D++    I
Sbjct: 356 ATDVAARGLDIPSVDVVLNYDVPQDSKTYIHRVGRTARAGKSGHAISVVTQYDLEIFMRI 415

Query: 361 EKLIEKK-VDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           E  + KK V++  +  ++    P +E+      N  +  +    K     + ++  +  K
Sbjct: 416 EAALGKKQVEYPTVKDEVMVFKPRVEEAQRHARNEMKNLHEDRGKKGAVLKGRRPANGAK 475

Query: 418 SHIPLKESEK 427
                 + E+
Sbjct: 476 RGRDEMDREE 485


>gi|167563223|ref|ZP_02356139.1| DEAD/DEAH box helicase domain protein [Burkholderia oklahomensis
           EO147]
 gi|167570404|ref|ZP_02363278.1| DEAD/DEAH box helicase domain protein [Burkholderia oklahomensis
           C6786]
          Length = 509

 Score =  150 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 147/403 (36%), Positives = 221/403 (54%), Gaps = 25/403 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGY KPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 41  TFASLGLSPEIVSALQAAGYAKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 100

Query: 62  ILEK--------------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL 101
              +                        V  P  L+L PTRELA QV      YGK+   
Sbjct: 101 RFAQLQKTQAQQPREPQQGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRR 160

Query: 102 -TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160
                ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADRMLD
Sbjct: 161 LRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLD 220

Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
           MGFI  I+ I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+     +   I   
Sbjct: 221 MGFIDDIETIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIQQRLESRTNIAQT 280

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
                 +  K    L   L     +   IIF   K +   L   L   GF   A+HG++ 
Sbjct: 281 VHYVDDRDHKDR--LLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLP 338

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTGRAG
Sbjct: 339 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 398

Query: 341 RHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381
           R G A +LV   +   +  IE+ +     V+ + G      PP
Sbjct: 399 RSGTAVSLVHHAEQGALKRIERFVRAPLPVNVIEGFEPRKAPP 441


>gi|118097368|ref|XP_425202.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
           [Gallus gallus]
          Length = 617

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 127/389 (32%), Positives = 196/389 (50%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G  +PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 177 SFKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 236

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 237 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALCIGGM 296

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + ++ G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 297 SVKEQMETIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 356

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     +      A       V       +
Sbjct: 357 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPITINVGRAGAASLDVVQEVEYVKE 412

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 413 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 472

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F++G   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 473 FRDGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 532

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 533 KACDESVLMDLKALLLEAKQKVPPVLQVL 561


>gi|312220673|emb|CBY00614.1| similar to ATP-dependent RNA helicase dbp8 [Leptosphaeria maculans]
          Length = 505

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 130/431 (30%), Positives = 204/431 (47%), Gaps = 24/431 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DFA L ++P +V ++      KPT IQ   IP +L+  D  G ++TGTGKT +F +P+L
Sbjct: 76  LDFASLDVAPWLVASLASMEIKKPTGIQQACIPEILKGRDCIGGSRTGTGKTVAFSVPIL 135

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               +          LI+ PTRELA Q+ +  +      ++   L+ GG     Q   L 
Sbjct: 136 QKWAE---DPSGIFGLIITPTRELAIQIYEQVKAISAPQSMKPILVTGGSDQREQAIALA 192

Query: 121 RGADVLICTPGRILDHFN----RGKLLMNNIEILVIDEADRMLDMG---FIPYIQNITSL 173
               ++I TPGR+ +H           +  +  +V DEADR+L  G    +P ++   S+
Sbjct: 193 SRPHIVIATPGRLAEHIRTSGEDTICGLRRVRFVVFDEADRLLAPGKGSMLPDLETCLSV 252

Query: 174 VPFTRQTLLFSATMTDE-----LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
           +P   +      T T       L+             EV+T +                 
Sbjct: 253 LPPKEKRQTLLFTATVTQEVLALKDQPRPGRLPIFISEVDTETLAIPPKLQQKYLQTPVT 312

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            K+C L   L   ++  K+ IIFCN+ K    L + L      V A+H  + Q  R+  L
Sbjct: 313 HKECYLHVLLNTPENLKKSVIIFCNRTKTATLLEYMLRLLEHRVTALHSGLKQSDRVGNL 372

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           + F+    +++VA+D+AARGLDIP+VG V N+DVP   ++YIHR+GRT RAGR G + TL
Sbjct: 373 ARFRAQAARILVATDVAARGLDIPEVGLVINYDVPRDPDDYIHRVGRTARAGRVGTSITL 432

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGD---------LSSLNPPLEKIDIAQHNHARKNNPI 399
           V + D++ I AIE  + KK++    +           +L P  EK   A  +     + +
Sbjct: 433 VGQRDVELILAIETRVGKKMEEFEEEGVSVEGRVVRDALRPVTEKKREAMLSIEEGRDVM 492

Query: 400 PQKSTGFDRRK 410
            ++  G  RR+
Sbjct: 493 GKRKVGMQRRR 503


>gi|226480840|emb|CAX73517.1| ATP-dependent RNA helicase DDX3X [Schistosoma japonicum]
          Length = 637

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 143/439 (32%), Positives = 220/439 (50%), Gaps = 18/439 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L L   V   V  A Y +PTP+Q   IP++    D+   AQTG+GKTA+F++P+L 
Sbjct: 174 SFTELSLHKIVRDNVELANYERPTPVQKHAIPIIASGRDLMACAQTGSGKTAAFLIPILN 233

Query: 62  ILEKG------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            + K               R + P  LIL PTRELA+Q+ D+  K+    ++   +L GG
Sbjct: 234 NMIKQGPGDSICATIDSNRRKQFPVALILAPTRELASQIFDDARKFSYRSSIRPCVLYGG 293

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q  +L +G +VL+ TPGR+ D   RG++ ++    LV+DEADRMLDMGF P I+ 
Sbjct: 294 ADMRTQLMELSKGCNVLVATPGRLSDVLERGRVGLDYCRFLVLDEADRMLDMGFEPQIRR 353

Query: 170 ITSL----VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I           RQTL+FSAT   E+Q ++++FL +   + V    ST+E I    +   
Sbjct: 354 IVEQDALPPSGERQTLMFSATFPHEIQILAKDFLSSYIFLTVGRVGSTSENITQTILWVE 413

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
               +   +      + +     ++F   K+    L + L  Q F V +IHG+  Q  R 
Sbjct: 414 ENAKRDALIDLL--ANSEAGTLTLVFVETKRGADALENYLYSQKFQVASIHGDRTQEDRE 471

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             LS F+ G   ++VA+ +AARGLDIP+V HV N+D+P+  E Y+HRIGRTGR G  G A
Sbjct: 472 LALSCFRSGRTPVLVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRVGNLGLA 531

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            +    ++      + +L+E+    +   L +L          +    R+     +    
Sbjct: 532 TSFFNDKNRNLARGLVELLEEANQAVPPWLKALTGDGRPTSFQRPRSNRRGGFGARDYRQ 591

Query: 406 FDRRKKNYSSQKSHIPLKE 424
              R  N S++ S   L++
Sbjct: 592 TPSRGGNNSNRPSGPTLRD 610


>gi|320166884|gb|EFW43783.1| DEAD/DEAH box helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 876

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 133/407 (32%), Positives = 217/407 (53%), Gaps = 8/407 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           + F   G    ++ A+   GY +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM 
Sbjct: 290 VSFGHFGFDSPLMAAISKHGYTQPTPIQAQAVPVGLSGRDIIGIAKTGSGKTAAFLWPML 349

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
              + +        P  +I+ PTREL  Q+ +   K+G+ Y L VA + GG     Q+K 
Sbjct: 350 VHIMDQDELDVGEGPIGVIVAPTRELCQQIYNEATKFGRVYGLRVAAIYGGESKYEQSKV 409

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++G ++L+ TPGR+++        M     LV+DEAD+M +MGF P +++I + +   R
Sbjct: 410 LQQGVEILVATPGRLIEMLKDKLTNMLRATFLVLDEADKMFNMGFEPQVRSIINRIRPDR 469

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    +++++ + L +P RI V       + +    V  ++   K   L   +
Sbjct: 470 QTLLFSATFKKRIERLARDVLTDPVRIVVGDVGEANQDVAQTAVILHSDDEKFSWLTSHI 529

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++   T  + ++F  +K     +   L K  F   A+HG++DQ SR  I++ FK     +
Sbjct: 530 VEFMSTG-SVLVFVTKKAGCQLVTDKLNKAHFEASALHGDVDQNSRNTIIAKFKRKAFPI 588

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  +  V NFDV    + + HRIGRTGRAG  G A+TL++ +D     
Sbjct: 589 LVATDVAARGLDISHIRTVVNFDVARDIDTHTHRIGRTGRAGEKGSAYTLLSSKDASFAG 648

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            + +  E     ++  L +L         A   + R +N   +++ G
Sbjct: 649 DLVRNFESANQPVSPQLLALAS-----QNAAFRNTRGDNSGHRRTGG 690


>gi|33861657|ref|NP_893218.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634234|emb|CAE19560.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 592

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 135/371 (36%), Positives = 204/371 (54%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  G +  ++ ++   GY  PTPIQ   IP ++   D+ G AQTGTGKTA+F LP++  
Sbjct: 52  FACFGFNKLILNSLESKGYKTPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEK 111

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFE-KYGKNYNLTVALLIGGIPFEAQNKKLER 121
           LE    +    + L++ PTRELA QVAD+F+    ++ NL    + GG  F  Q   L+R
Sbjct: 112 LENN--KESNAKVLVMTPTRELATQVADSFKSYSAESTNLRTLAIYGGTDFRNQISSLKR 169

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGRI+DH  +G   +NNI  LV+DEAD ML MGF+  I+ I   +P  +Q +
Sbjct: 170 KTDIVVGTPGRIMDHIRQGTFKINNISCLVLDEADEMLKMGFLEDIEWIIDKLPENKQMV 229

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +E++ +++ +L  P  I + +     +         Y    +   L       
Sbjct: 230 LFSATMPNEIRNIAKKYLNEPAEILIKS----VKQETQLITQKYINVQRHHKLDALKRIL 285

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T +  IIF   K    ++  +LE  G SV  ++G+I Q  R   +   K+G I ++VA
Sbjct: 286 EITNEGVIIFVRTKLLTTSIAEALENSGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVA 345

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V N+D P   E Y HRIGRTGRAGR G+A   V + +   +  +E
Sbjct: 346 TDVAARGLDVERIKLVINYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLE 405

Query: 362 KLIEKKVDWLN 372
                K++ + 
Sbjct: 406 NSTRNKIEEIE 416


>gi|332028827|gb|EGI68856.1| ATP-dependent RNA helicase bel [Acromyrmex echinatior]
          Length = 704

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 139/396 (35%), Positives = 206/396 (52%), Gaps = 19/396 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L+  +  ++  AGY KPTP+Q   IP++++R DV   AQTG+GKTA+F++P+L 
Sbjct: 214 SFDEVKLTEIIKNSIALAGYDKPTPVQKYAIPIIIERRDVMACAQTGSGKTAAFLVPILN 273

Query: 62  ILEKGRARVRMPRTL------------ILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            + +   R   P+              +L PTRELA Q+ D   K+     +  A++ GG
Sbjct: 274 QIYESGPRPPPPQANSSGRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGG 333

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q ++L+RG  +L+ TPGR++D   RGK+ ++N   LV+DEADRMLDMGF P I+ 
Sbjct: 334 SNIVDQMRELDRGCHLLVATPGRLVDMLGRGKIGLHNCRFLVLDEADRMLDMGFEPQIRR 393

Query: 170 ITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I            QTL+FSAT   E+Q ++ +FL N   + V    ST+E I    V   
Sbjct: 394 IVQEDNMPPTGERQTLMFSATFPKEIQMLARDFLSNYIFLAVGRVGSTSENITQKIVWVE 453

Query: 226 AQYSKKCALLQQLLQSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
               +   L      +          ++F   KK    L   L   G+ V +IHG+  QR
Sbjct: 454 EHDKRSYLLDLLQASNFSDPTAESLTLVFVETKKGADMLEEYLASMGYPVTSIHGDRTQR 513

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P   E Y+HRIGRTGR G  
Sbjct: 514 EREEALRRFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGNL 573

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +    ++   +  +  L+ +    L   L  +
Sbjct: 574 GLATSFFNHKNHNLVRDLVSLLIEANQELPPWLDDM 609


>gi|316978431|gb|EFV61418.1| putative ATP-dependent RNA helicase Pl10 [Trichinella spiralis]
          Length = 552

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 140/443 (31%), Positives = 217/443 (48%), Gaps = 25/443 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L L P ++  +    Y KPTP+Q   IP  L+  D+   AQTG+GKTA+F+LP+L 
Sbjct: 85  KFSELNLHPWIMDNIRLCHYDKPTPVQKFAIPTALENRDLMACAQTGSGKTAAFLLPILH 144

Query: 62  ILEKGRA-------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLI 107
            +  G               R   P  L+L PTREL  Q+ +   K+      ++  L  
Sbjct: 145 HILSGGPEMLRKSDTAPNGRRRLYPAALVLAPTRELTLQIFNEACKFSYRTPIMSTILYG 204

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           G   +  Q  KL  G  +L+ TPGR+ D  N+G + ++    LV+DEADRMLDMGF P I
Sbjct: 205 GRENYRDQINKLRIGCHLLVATPGRLNDVMNQGYIGLDACRFLVLDEADRMLDMGFEPQI 264

Query: 168 QNITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I  +        RQT++FSAT   E+Q ++++FL             +        + 
Sbjct: 265 RQIVEMSGMPRRSHRQTMMFSATFPHEIQMLAQDFLVPDYVFLAVGRVGSTSENITQKLV 324

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
               Y K+   L  LL +       +IF   K+   +L + L  + +SV AIHG++ Q  
Sbjct: 325 WVEDYDKRA-FLLDLLNASSPETLTLIFVETKRGAADLAYFLSGERYSVVAIHGDLKQFE 383

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L +F+ G   ++VA+ +AARGLDIP+V HV N+D+P+  + Y+HRIGRTGR G  G
Sbjct: 384 REQHLESFRSGNTPILVATAVAARGLDIPNVKHVINYDLPSEIDEYVHRIGRTGRVGNIG 443

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
            A T    ++      + +L+ +    L   L  +    E     QH +  +N    Q++
Sbjct: 444 LATTFFNNKNKNMARDLAELLVEANQELPDFLERM--ARENPRGTQHGNRSRN----QRN 497

Query: 404 TGFDRRKKNYSSQKSHIPLKESE 426
            G    +  Y S   +  +  + 
Sbjct: 498 FGGRDFRDQYRSGGGNAAMHNAR 520


>gi|50547433|ref|XP_501186.1| YALI0B21538p [Yarrowia lipolytica]
 gi|74660084|sp|Q6CDS6|ROK1_YARLI RecName: Full=ATP-dependent RNA helicase ROK1
 gi|49647052|emb|CAG83439.1| YALI0B21538p [Yarrowia lipolytica]
          Length = 547

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 109/440 (24%), Positives = 206/440 (46%), Gaps = 14/440 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F DL     L P ++  +    Y  PTPIQ ++IP +L   D+   A TG+GKT ++ +
Sbjct: 108 SFEDLITRFNLHPYLLANLKKNKYTDPTPIQCESIPTMLNGRDLIACAPTGSGKTMAYSI 167

Query: 58  PMLTI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT------VALLIG 108
           PM+ +    +  +   +  + L++ PT+ELA+Q+ +                    L   
Sbjct: 168 PMVEMLGKKKGSKDAKKGIKALVVAPTKELASQIFNAVFSLCVGVGKKKDELKPCLLDKS 227

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
                   K   +  D+ I TP R++   N G L + ++++++ DEAD++ + GF   + 
Sbjct: 228 TADKLRNGKVSSQKYDICITTPLRLVSALNDGSLDLGSLDLVIFDEADKLFEKGFATQVD 287

Query: 169 NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
           +I +  P   Q  LFSAT+   +++++ + +       +      A       +      
Sbjct: 288 DILAACPSGIQKTLFSATIPASVEQLANSIMSTDPLRIIIGNKQAAAQTVEQKLVYAGNE 347

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
             K   ++Q+ +    +   IIF         L   L   G +V  IHG++    R  ++
Sbjct: 348 EGKLVAIRQMAREGQLVAPVIIFLQSIDRAKALFKELVFDGINVDQIHGDMTAAKRASVI 407

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             F+ G + +++ +D+ ARG+D   +  V N+DVP  A++Y+HRIGRTGRAGR GKA T 
Sbjct: 408 DRFRNGEVWVLICTDVLARGIDFRGINLVINYDVPQSAQSYVHRIGRTGRAGRLGKAVTF 467

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK-IDIAQHNHARKNNPIPQKSTGFD 407
             KED  ++  +  ++++    +   L++L P  +K  D  ++   ++     Q +   +
Sbjct: 468 FTKEDATNVKVVVNVMKQSGQEVPDWLNNLAPLTQKERDNIKNRPIKRKKISTQHALANN 527

Query: 408 RRKKNYSSQKSHIPLKESEK 427
           ++K+     K    +K+ ++
Sbjct: 528 KKKRAKQQMKGLKKMKKDDE 547


>gi|302798402|ref|XP_002980961.1| hypothetical protein SELMODRAFT_51367 [Selaginella moellendorffii]
 gi|300151500|gb|EFJ18146.1| hypothetical protein SELMODRAFT_51367 [Selaginella moellendorffii]
          Length = 653

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 132/362 (36%), Positives = 200/362 (55%), Gaps = 4/362 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL   ++ A+   GY  PTPIQ + +P+VL   D+ GIA+TG+GKTA+FVLPM+ 
Sbjct: 184 QFKELGLDSLLMGAITKQGYENPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIV 243

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       +   P  +I  PTRELA Q+ +   K+ K Y + V+ + GG+    Q K+L
Sbjct: 244 HIMDQEELGKGEGPIGVICAPTRELAQQIFNESRKFAKPYGIRVSGVFGGMSKLDQFKEL 303

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++++ TPGR++D      L M     LV+DEADRM D+GF P I++I   +   RQ
Sbjct: 304 KAGCEIVVATPGRLIDMLKMKALTMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 363

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   ++ ++   L  P R+         E +            K    +   L
Sbjct: 364 TLLFSATMPRRVETLAREVLSAPVRVTAGEVGRANEDVTQVAQIVATDADK-LQWMLSKL 422

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + ++F + K  V  L   L+  GF V A+HG+ DQ SR+ +L  FK G   ++
Sbjct: 423 PQMVDAGDVLVFASTKVRVEELEKHLQDSGFKVAALHGDKDQASRVDVLQGFKSGQFHVL 482

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIKHID 358
           VA+D+AARGLDI  +  V N+D     + ++HR+GRTGRAG + G A+TLV +++ +   
Sbjct: 483 VATDVAARGLDIKSIKTVVNYDTAKDMDTHVHRVGRTGRAGDKEGVAYTLVTQKEARFAG 542

Query: 359 AI 360
            +
Sbjct: 543 DL 544


>gi|221195199|ref|ZP_03568255.1| dead/deah box helicase [Atopobium rimae ATCC 49626]
 gi|221185102|gb|EEE17493.1| dead/deah box helicase [Atopobium rimae ATCC 49626]
          Length = 457

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 148/433 (34%), Positives = 221/433 (51%), Gaps = 42/433 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGL+  ++  V   G+  PTPIQ   IP VL   DV   AQTGTGKTA+FV P L 
Sbjct: 4   TFAELGLNEHILTGVETLGFNTPTPIQAAAIPAVLAGKDVVASAQTGTGKTAAFVFPALQ 63

Query: 62  ILEKGR---------------------------------------ARVRMPRTLILEPTR 82
           +++ G                                         R R P+ LI+ PTR
Sbjct: 64  VIDTGFGDEKTDRPEVQCQPQDGQQQSSQQQESQRRRQRGGKRRRNRTRDPQALIVTPTR 123

Query: 83  ELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142
           ELA Q+        K+      ++ GG   + Q   ++ G D+L+ TPGR+LD     ++
Sbjct: 124 ELATQIERVATTICKSTGQRAVIITGGAKLKRQISAVQAGCDLLVATPGRLLDLIEHHQV 183

Query: 143 LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNP 202
            + NI++ ++DEADRMLDMGF P ++ I   +P  RQTLLFSAT+   +    +N L +P
Sbjct: 184 NLKNIKVFILDEADRMLDMGFWPSVRRIMDTLPPKRQTLLFSATLPPSIISTIDNMLHDP 243

Query: 203 KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLC 262
             IE+     TA+T+E           K   L   +   +   +  ++FC  K  V ++ 
Sbjct: 244 TMIEIARTGQTADTVEEHLCPVVQGQ-KVELLESLIRSFRPAPERILVFCRTKLRVDSVY 302

Query: 263 HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322
            +L   GF V  +H +  Q +R + L+ F+ GTIQ++VA+D+ +RG+D+  +  V NFDV
Sbjct: 303 AALNNAGFKVDVMHADRPQGARTRALTKFRNGTIQILVATDVMSRGIDVQGIDAVVNFDV 362

Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPL 382
           P   E+Y+HRIGRTGRAG  G+AFT +A ++I  +  IE   +  +     DL +     
Sbjct: 363 PLDPEDYVHRIGRTGRAGSAGQAFTFMAPDEIAPLREIEYFTKSLIS--TWDLPNFGYQE 420

Query: 383 EKIDIAQHNHARK 395
            +I + Q+  A K
Sbjct: 421 GRIVLPQNRPATK 433


>gi|167837073|ref|ZP_02463956.1| ATP-dependent RNA helicase [Burkholderia thailandensis MSMB43]
          Length = 475

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 147/406 (36%), Positives = 221/406 (54%), Gaps = 28/406 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 40  TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 99

Query: 62  ILEK-----------------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
              +                           V  P  L+L PTRELA QV      YGK+
Sbjct: 100 RFAQLQKTQALQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 159

Query: 99  YNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
                   ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 160 LRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 219

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I  I +  P +RQT+LFSAT+  ++  ++   L++P+RIE+     +   I
Sbjct: 220 MLDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNI 279

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                    +  K    L   L     +   IIF   K +   L   L   GF   A+HG
Sbjct: 280 AQTVHYVDDRDHKDR--LLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHG 337

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 338 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 397

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381
           RAGR G A +LV   +   +  IE+ +     V+ + G      PP
Sbjct: 398 RAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEPRKAPP 443


>gi|301785524|ref|XP_002928176.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like
           [Ailuropoda melanoleuca]
          Length = 622

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 194/389 (49%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 182 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 361

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 362 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKE 417

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 538 KACDESVLMDLKALLLEAKQKVPPVLQVL 566


>gi|297676837|ref|XP_002816330.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Pongo
           abelii]
          Length = 621

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 194/389 (49%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 181 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 240

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 241 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 300

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 301 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 360

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 361 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKE 416

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 417 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 476

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 477 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 536

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 537 KACDESVLMDLKALLLEAKQKVPPVLQVL 565


>gi|296193469|ref|XP_002744529.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Callithrix
           jacchus]
          Length = 622

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 194/389 (49%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 182 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 361

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 362 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKE 417

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 538 KACDESVLMDLKALLLEAKQKVPPVLQVL 566


>gi|281342094|gb|EFB17678.1| hypothetical protein PANDA_018093 [Ailuropoda melanoleuca]
          Length = 613

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 194/389 (49%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 173 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 232

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 233 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 292

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 293 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 352

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 353 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKE 408

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 409 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 468

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 469 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 528

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 529 KACDESVLMDLKALLLEAKQKVPPVLQVL 557


>gi|149726038|ref|XP_001502240.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX41
           (DEAD box protein 41) (DEAD box protein abstrakt
           homolog) [Equus caballus]
          Length = 622

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 194/389 (49%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 182 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 361

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 362 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKE 417

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 538 KACDESVLMDLKALLLEAKQKVPPVLQVL 566


>gi|129277522|ref|NP_001076071.1| probable ATP-dependent RNA helicase DDX41 [Bos taurus]
 gi|126717403|gb|AAI33466.1| DDX41 protein [Bos taurus]
 gi|296485512|gb|DAA27627.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Bos taurus]
          Length = 622

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 194/389 (49%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 182 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 361

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 362 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKE 417

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 538 KACDESVLMDLKALLLEAKQKVPPVLQVL 566


>gi|30584005|gb|AAP36251.1| Homo sapiens DEAD-box protein abstrakt [synthetic construct]
 gi|61369941|gb|AAX43416.1| DEAD box polypeptide 41 [synthetic construct]
 gi|61369946|gb|AAX43417.1| DEAD box polypeptide 41 [synthetic construct]
          Length = 623

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 194/389 (49%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 182 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 361

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 362 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKE 417

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 538 KACDESVLMDLKALLLEAKQKVPPVLQVL 566


>gi|6118555|gb|AAF04150.1|AF195417_1 DEAD-box protein abstrakt [Homo sapiens]
          Length = 621

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 194/389 (49%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 181 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 240

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 241 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 300

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 301 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 360

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 361 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKE 416

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 417 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 476

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 477 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 536

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 537 KACDESVLMDLKALLLEAKQKVPPVLQVL 565


>gi|73953218|ref|XP_536417.2| PREDICTED: similar to Probable ATP-dependent helicase DDX41
           (DEAD-box protein 41) (DEAD-box protein abstrakt
           homolog) isoform 1 [Canis familiaris]
          Length = 622

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 194/389 (49%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 182 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 361

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 362 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKE 417

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 538 KACDESVLMDLKALLLEAKQKVPPVLQVL 566


>gi|56461091|ref|YP_156372.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
 gi|56180101|gb|AAV82823.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 594

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 129/373 (34%), Positives = 215/373 (57%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D+ L   V+  +    ++ PTPIQ++ IP +L+  DV G AQTGTGKTA+F LP L
Sbjct: 8   LSFNDMALPSAVLEQLNAMQFLTPTPIQLQAIPALLEGQDVLGEAQTGTGKTAAFGLPAL 67

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKL 119
             ++     V+  + L++ PTRELA QVA+  E +        VA + GG PF  Q K L
Sbjct: 68  AKIDAS---VKQTQVLVVTPTRELAIQVAEALEGFAAKMRGVGVATVYGGAPFGPQVKAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G  +++ TPGR++D  N+  L ++ +++ V+DEAD ML+MGFI  I+ I   VP T Q
Sbjct: 125 KQGTAIVVGTPGRLIDLLNKNVLQLDGLKVGVLDEADEMLNMGFIEDIETILKAVPNTAQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM + ++K+++ FL++P  I++   +    TI+                    +
Sbjct: 185 RALFSATMPNAIRKLAKTFLKDPLNIQIEAIAREKATIKQKAWKVQGMTKMTALTRLLEV 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  +IF   +++ +++   L++ GF    + G+++Q  R + +S  + G I+++
Sbjct: 245 TPY---QRALIFVRTRQDTMDVAELLQRNGFKAAPLSGDLNQAQREQTVSQLRSGHIEIL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+ ARGLD+P++ HV N+D+P+  E+Y+HRIGRTGRAGR G+A      ++   +  
Sbjct: 302 VGTDVVARGLDVPEITHVINYDLPSDTESYVHRIGRTGRAGRTGEAILFFRAKERHLLRH 361

Query: 360 IEKLIEKKVDWLN 372
            E+L    V++  
Sbjct: 362 YERLTNAPVEFFE 374


>gi|21071032|ref|NP_057306.2| probable ATP-dependent RNA helicase DDX41 [Homo sapiens]
 gi|55625482|ref|XP_518135.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 isoform 3 [Pan
           troglodytes]
 gi|20532370|sp|Q9UJV9|DDX41_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX41; AltName:
           Full=DEAD box protein 41; AltName: Full=DEAD box protein
           abstrakt homolog
 gi|15930065|gb|AAH15476.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Homo sapiens]
 gi|119605387|gb|EAW84981.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41, isoform CRA_d [Homo
           sapiens]
 gi|189067937|dbj|BAG37875.1| unnamed protein product [Homo sapiens]
 gi|306921323|dbj|BAJ17741.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [synthetic construct]
 gi|325463517|gb|ADZ15529.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [synthetic construct]
          Length = 622

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 194/389 (49%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 182 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 361

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 362 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKE 417

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 538 KACDESVLMDLKALLLEAKQKVPPVLQVL 566


>gi|307214987|gb|EFN89832.1| Probable ATP-dependent RNA helicase DDX27 [Harpegnathos saltator]
          Length = 734

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 146/488 (29%), Positives = 237/488 (48%), Gaps = 43/488 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++ A+    ++ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP L 
Sbjct: 156 TFYQMNLSRPLLKAITTMNFLTPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPTLE 215

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L            + +L PTREL  QV    ++  +  ++   L +GG+  + Q   L 
Sbjct: 216 RLMYKPLDGPAVTRVLVLVPTRELGVQVYQVTKQLSQFTSVETGLSVGGLDVKVQESILR 275

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           R  D++I TPGR++DH  N     ++ IE+L++DEADRMLD  F   ++ I +    +RQ
Sbjct: 276 RNPDIVIATPGRLIDHLRNTPTFSLDIIEVLILDEADRMLDEYFAEQMKYIVNQCSRSRQ 335

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMT+E++ ++   L  P +I V++    A  +   F+    +       +   L
Sbjct: 336 TMLFSATMTEEVKDLAAVSLDKPIKIFVDSNQDVAFNLRQEFIRIRKEREGDREAILAAL 395

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + ++F   KK    L   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 396 ICRTFHDHVMVFVQTKKQAHRLHILLGLLGVKVGELHGNLTQPQRLENLQEFKDEIINIL 455

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  V  V NF +P   ++YIHR+GRT RAGR G + +L  +++   +  
Sbjct: 456 IATDVAARGLDISGVKTVINFVMPATLQHYIHRVGRTARAGRVGVSVSLAGEQERSLVKE 515

Query: 360 IEKLIEKK----------VDWLNGDLSSLNPPLEKI------------------------ 385
           + K  +            ++  N  L SL   +EKI                        
Sbjct: 516 VIKRAKNPVKNRIIPPDIIEKYNKKLQSLEIDVEKILQEEKSERELAKIENQANRAENLL 575

Query: 386 -DIAQHNH-----ARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESE-KISKLQQDIQEN 438
            D+ + NH     ++K   + +++     R  N    +   P+   E K  K Q + +++
Sbjct: 576 KDVEERNHRSWFQSKKERRMEKENLRLTERPTNKKKDREKEPINIVEDKKKKAQNEPKKD 635

Query: 439 DADSLGFR 446
            A+    R
Sbjct: 636 TAEDRAKR 643


>gi|242767802|ref|XP_002341440.1| DEAD/DEAH box RNA helicase [Talaromyces stipitatus ATCC 10500]
 gi|218724636|gb|EED24053.1| DEAD/DEAH box RNA helicase [Talaromyces stipitatus ATCC 10500]
          Length = 1175

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 123/436 (28%), Positives = 211/436 (48%), Gaps = 18/436 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + ++  GL  + +  +   GY  PT IQ + +P ++   DV G+A+TG+GKT SF+LPM 
Sbjct: 542 LKWSQCGLGVQTLDVISKLGYENPTSIQSQALPAIMSGRDVIGVAKTGSGKTISFLLPMF 601

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             ++       +  P  LI+ PTRELA Q+  + + + K  NL      GG P + Q  +
Sbjct: 602 RHIKDQHPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAE 661

Query: 119 LERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           L+RGA++++CTPGR++D           +  +  +V+DEADRM DMGF P +  I + + 
Sbjct: 662 LKRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIR 721

Query: 176 FTRQTLLFSATMTDELQ---KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
             +QT+LFSAT    ++   + + N          +  +     I               
Sbjct: 722 PNKQTVLFSATFPRNMEALARKTLNKPVEIIVGGRSVVAPEITQIVEVRNENTKFLRLLE 781

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L        +     +IF ++++   +L   L ++G+   +IHG  DQ  R   +++FK
Sbjct: 782 LLGNLYSDEANEDARTLIFVDRQEAADSLLRELMRKGYPCMSIHGGKDQIDRDSTIADFK 841

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++
Sbjct: 842 AGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTED 901

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
             ++   I K +++    +   +  L +  LEK+   +   +         ++GF  +  
Sbjct: 902 QERYSVDIAKALKQSGQAVPEPVQKLVDSFLEKVKAGKEKAS---------ASGFGGKGL 952

Query: 412 NYSSQKSHIPLKESEK 427
               Q+         K
Sbjct: 953 ERLDQERDAARNRERK 968


>gi|296806541|ref|XP_002844080.1| ATP-dependent RNA helicase DBP4 [Arthroderma otae CBS 113480]
 gi|238845382|gb|EEQ35044.1| ATP-dependent RNA helicase DBP4 [Arthroderma otae CBS 113480]
          Length = 803

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 123/455 (27%), Positives = 197/455 (43%), Gaps = 26/455 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F DL LS      +  + +   T IQ + IP  LQ  D+ G A+TG+GKT +F++P + 
Sbjct: 51  SFTDLPLSEPTRLGLSASHFKTLTDIQARGIPHALQGRDILGAAKTGSGKTLAFLVPVLE 110

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  K          LI+ PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L 
Sbjct: 111 NLFRKQWTEYDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLQEEQERLG 170

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +           +NI++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 171 RMNILVCTPGRMLQHMDQTAAFDTDNIQMLVLDEADRIMDMGFQSTVDAIVEHLPKERQT 230

Query: 181 LLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT T ++      +             SS   +             K   L   + 
Sbjct: 231 MLFSATQTKKVSDLARLSLRDPEYISVHEAASSATPSTLQQHYVVTPLPDKLDTLWSFIR 290

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S  +        +++   V       + G  +  +HG   Q +R+ I   F       +
Sbjct: 291 SSLKSKIIVFFSSSKEVRFVYEAFRQMQPGIPLLHLHGRQKQGARVDITHKFSTSKNSCL 350

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKHID 358
            A+D+ ARGLD P V  V   D P  ++ YIHR+GRT R  R G+A   +   E+I  + 
Sbjct: 351 FATDVVARGLDFPAVDWVIQLDCPEDSDTYIHRVGRTARYERDGRAVLFLDPSEEIGMLS 410

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +E   +KK+            P+EKI+I  +      + +  ++  F   +  Y  QK+
Sbjct: 411 RLE---QKKI------------PIEKINIRANKQQSIKHQL--QNMCFKDPQLKYLGQKA 453

Query: 419 HIPLKESEKISKLQQDIQ------ENDADSLGFRG 447
                +S  I K ++         E  A SLG  G
Sbjct: 454 FTSYVKSIHIQKDKEVFDVKALPLEEFAASLGLPG 488


>gi|195453112|ref|XP_002073643.1| GK14214 [Drosophila willistoni]
 gi|194169728|gb|EDW84629.1| GK14214 [Drosophila willistoni]
          Length = 745

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 133/382 (34%), Positives = 209/382 (54%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF ++ L   V+  +   GY +PTPIQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 305 DFNEVYLPDYVMKEIRRQGYKEPTPIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIV 364

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   +   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 365 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 424

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 425 QRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 484

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--- 236
           TL++SAT   E+++++E+FL N  +I + +   +A       V    ++SK+  L     
Sbjct: 485 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVEVCDEFSKEDKLKSLLS 544

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +  + +     IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G  
Sbjct: 545 DIYDTSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 604

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + K 
Sbjct: 605 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 664

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
             A+  ++ +    +N  L +L
Sbjct: 665 AKALVDVLREANQEINPALENL 686


>gi|76781331|gb|ABA54551.1| vasa-like protein [Monopterus albus]
          Length = 618

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 204/389 (52%), Gaps = 13/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTASF+LP+L
Sbjct: 192 MTFDEAELCETLRRNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTASFLLPIL 251

Query: 61  TILEK------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + ++ P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 252 QQLMVDGVAASCFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGY 311

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
           Q +++ +G +VL  TPGR+LD   RGK+ ++ +  LV+DEADRMLDMGF P ++      
Sbjct: 312 QIREILKGCNVLCGTPGRLLDMIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRRLVGSP 371

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                   QTL+FSAT  +++Q+++ +FL+             A T          ++SK
Sbjct: 372 GMPPKENHQTLMFSATFPEDIQRMAADFLKTDYLFLAVGEVGGACTDVEQTFVQVTKFSK 431

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++         +  ++F   K+    +   L ++     +IHG+ +Q  R K L++
Sbjct: 432 RDQLVE--FLKTTGTERTMVFAETKRQADFIALFLCQEKVPTTSIHGDREQPEREKALAD 489

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDIPDV HV NFD+PN  + Y+HRIGRTGR G  G+A +   
Sbjct: 490 FRSGKCLVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNIGRAVSFFD 549

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
              D +   ++  ++ K    +   L   
Sbjct: 550 PNADGQLARSLVMILSKAQQEVPSWLEEF 578


>gi|157278092|ref|NP_001098146.1| VASA [Oryzias latipes]
 gi|14522857|dbj|BAB61047.1| VASA [Oryzias latipes]
          Length = 617

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 126/388 (32%), Positives = 207/388 (53%), Gaps = 13/388 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   +  +GYVKPTP+Q   +P++    D+   AQTG+GKTA+F+LP+L
Sbjct: 181 MTFEEAKLCESLENNISRSGYVKPTPVQKYGLPIISAGRDLMACAQTGSGKTAAFLLPIL 240

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + ++ P  +I+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 241 QQLMADGVAASRFSEIQEPEAVIVAPTRELINQIYQEARKFSFGTCVRPVVVYGGVNTGY 300

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
           Q +++E+G +VL  TPGR+LD   RGK+ ++ +  LV+DEADRMLDMGF P ++      
Sbjct: 301 QMREIEKGCNVLCGTPGRLLDMIGRGKVGLSKVRHLVLDEADRMLDMGFEPDMRRLVGSP 360

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++Q+++ +FL+             A T          +++K
Sbjct: 361 GMPSKEERQTLMFSATFPEDIQRLAADFLKVDYLFVAVGVVGGACTDVEQTFLQVTKFNK 420

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +       L      +  ++F   K+    +   L ++     +IHG+ +QR R K L++
Sbjct: 421 RE--QLLDLLRTIGSERTMVFVETKRQADFIAAFLCQEKVPTTSIHGDREQREREKALAD 478

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +A+RGLDIPDV HV NFD+PN  ++Y+HRIGRTGR G  G+A +   
Sbjct: 479 FRSGKCPVLVATSVASRGLDIPDVQHVVNFDLPNTIDDYVHRIGRTGRCGNTGRAVSFYD 538

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSS 377
            + D +   ++  ++ K    +   L  
Sbjct: 539 PDVDSQLARSLVGILAKAQQEVPSWLEE 566


>gi|328778605|ref|XP_001122266.2| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Apis
           mellifera]
          Length = 739

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 142/445 (31%), Positives = 226/445 (50%), Gaps = 21/445 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++ A+    +V PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP L 
Sbjct: 157 TFHQMNLSRPLLKAITAMNFVHPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPTLE 216

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L            + +L PTREL  QV    ++  +   + V L +GG+  +AQ   L 
Sbjct: 217 RLLYRPLDGPAISRVLVLVPTRELGVQVYQVTKQLSQFTTIEVGLSVGGLDVKAQEAVLR 276

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           R  D++I TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I      +RQ
Sbjct: 277 RNPDIVIATPGRLIDHLKNTPTFSLDSIEVLILDEADRMLDEYFAEQMKYIVKQCSRSRQ 336

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMT+E++ ++   L  P ++ +++    A  +   F+    +       +   L
Sbjct: 337 TILFSATMTEEVKDLAAVSLNKPVKVFIDSNQDVAFNLRQEFIRIRKEREGDREAILAAL 396

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + ++F   KK    L   L   G  V  +HGN+ Q  R++ L+ FK   I ++
Sbjct: 397 ICRTFHDHVMVFVQTKKQAHRLHILLGLLGIKVGELHGNLTQPQRLENLTKFKNEEIDIL 456

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  V  V NF +P   ++YIHR+GRT RAGR G + +L  +++   +  
Sbjct: 457 LATDVAARGLDISGVKTVINFVMPATMQHYIHRVGRTARAGRVGVSVSLAGEQERSLVKE 516

Query: 360 IEKLIEKK----------VDWLNGDLSSLNPPLEKIDIAQ---------HNHARKNNPIP 400
           I K  +            +D     L SL P +EKI   +          N A +   + 
Sbjct: 517 IIKNAKNPVKNRIIPSDIIDKYYKKLQSLEPDVEKILEEERNERELAKIENQANRAEKLL 576

Query: 401 QKSTGFDRRKKNYSSQKSHIPLKES 425
           +  +  + ++  + +QK     KE 
Sbjct: 577 KNESNKNIQRTWFQTQKERKEEKER 601


>gi|119494918|ref|XP_001264258.1| ATP-dependent RNA helicase (Drs1), putative [Neosartorya fischeri
           NRRL 181]
 gi|142982588|sp|A1D1R8|DRS1_NEOFI RecName: Full=ATP-dependent RNA helicase drs1
 gi|119412420|gb|EAW22361.1| ATP-dependent RNA helicase (Drs1), putative [Neosartorya fischeri
           NRRL 181]
          Length = 819

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 135/359 (37%), Positives = 196/359 (54%), Gaps = 1/359 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  LS  ++  +    +  PTPIQ KTIP+ L   D+ G A TG+GKTA+FV+P+L 
Sbjct: 300 SFQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILE 359

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q  +   K   + ++T   L+GG     Q   L++
Sbjct: 360 RLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATHTDITFCQLVGGFSLREQENILKK 419

Query: 122 GADVLICTPGRILDHFNRGKLLMNNI-EILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH         +  EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 420 RPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPQSRQT 479

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTD + K+    L  P R+ V++  +T+  +   FV        K       L 
Sbjct: 480 MLFSATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLTQEFVRLRPGREDKRLGYLLYLC 539

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      I+F  QK+    +       G     +HG++ Q  R+K + NF+EG +  ++
Sbjct: 540 NEIYTGRVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVENFREGKVAFLL 599

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + +
Sbjct: 600 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKIVKS 658


>gi|94969920|ref|YP_591968.1| DEAD/DEAH box helicase-like [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551970|gb|ABF41894.1| DEAD/DEAH box helicase-like protein [Candidatus Koribacter
           versatilis Ellin345]
          Length = 423

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 139/401 (34%), Positives = 217/401 (54%), Gaps = 8/401 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  +   +  A ++ PTP+Q K IP  L   D+   AQTGTGKT +F++P L 
Sbjct: 28  TFNDMPLSDVLKQRLEAAQFINPTPVQEKAIPPALDGRDILATAQTGTGKTLAFIIPALE 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L          + LIL PTRELA QV   +E+       + AL++GG     Q + +  
Sbjct: 88  MLR--DTEPCGVQVLILVPTRELAMQVHGVYEQLKGKKLKSAALVMGGTSERNQIQSIRS 145

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR+ D+  R  + ++ +E+LV+DEADRM+DMGF+P I+ I   +P  +QTL
Sbjct: 146 GARVVVATPGRLEDYMGRRLVDLSQVEMLVLDEADRMMDMGFLPAIKRILRALPRDKQTL 205

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM   +  + ++ L N  R+E+ +    A  +E   +       K           
Sbjct: 206 CFSATMGPAVSGIVQDCLYNAVRVEIGSILKPAAAVELHAIEVPIMGKKDALRQLL---- 261

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     ++F   K+    L   L + GFS   IHG+  Q  R   L+ F +G+I+++VA
Sbjct: 262 YEQEGKTLVFARTKRGTERLAKELIRDGFSAAMIHGDRSQSQRNAALAAFDKGSIKVLVA 321

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ D+ HV NFD+P   E++IHR+GRTGRAG  G A +LV+  ++  +  IE
Sbjct: 322 TDVAARGLDVDDIAHVINFDLPQVPEDFIHRVGRTGRAGATGMATSLVSGAEVFELRNIE 381

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           + ++ K+     DL++   P  ++        R    +P +
Sbjct: 382 RTLKLKIAR--RDLNATTTPKREVKHRDTLSTRTLKRLPGE 420


>gi|307173483|gb|EFN64393.1| Probable ATP-dependent RNA helicase DDX27 [Camponotus floridanus]
          Length = 694

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 145/443 (32%), Positives = 230/443 (51%), Gaps = 15/443 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++ A+    +++PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP L 
Sbjct: 115 TFYQMNLSRPLLKAITAMNFIQPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPTLE 174

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L            + +L PTREL  QV    ++  +   + V L +GG+  + Q   L 
Sbjct: 175 RLLYRPLDGPAVSRVLVLVPTRELGVQVYQVTKQLTQFTTVEVGLSVGGLDVKVQESVLR 234

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  D++I TPGR++DH  N     +NNIE+L++DEADRMLD  F   ++ I      T+Q
Sbjct: 235 KNPDIVIATPGRLIDHLNNAPTFSLNNIEVLILDEADRMLDEYFAEQMKYIVKQCARTKQ 294

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMT+E++ ++   L NP +I V++    A  +   F+    +       +   L
Sbjct: 295 TILFSATMTEEVKDLAAVSLNNPIKIFVDSNQDVAFNLRQEFIRIRKEREGDREAILAAL 354

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + +IF   KK    L   L   G  V  +HGN+ Q  R++ L  FKE  I ++
Sbjct: 355 VCRTFHDHTMIFVQTKKQAHRLHILLGLLGLKVGELHGNLTQPQRLENLQKFKEEEIDIL 414

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  V  V NF +P   ++YIHR+GRT RAGR G + +L  +++   +  
Sbjct: 415 LATDVAARGLDISGVKTVINFMMPATLQHYIHRVGRTARAGRGGVSVSLAGEQERFLVKE 474

Query: 360 IEKLIEKK----------VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR- 408
           I K  +            ++  N  L SL   +E+I   + N  ++   I  ++   ++ 
Sbjct: 475 IIKQAKNPIKNRIIPPDIIEKYNKKLQSLEVDVERILQEEKND-KELAKIENQANRVEKL 533

Query: 409 -RKKNYSSQKSHIPLKESEKISK 430
            + ++   Q+S    K+  K  K
Sbjct: 534 LKDEDTKDQRSWFQTKKERKKEK 556


>gi|145496370|ref|XP_001434176.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124401299|emb|CAK66779.1| unnamed protein product [Paramecium tetraurelia]
          Length = 472

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 195/380 (51%), Gaps = 3/380 (0%)

Query: 1   MDFAD-LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           + F D       +   ++ AG+  PTPIQ ++  + L  HD+ GIAQTG+GKT +F+LP 
Sbjct: 69  LRFEDVYCFPKPLQELIVQAGFPGPTPIQAQSWSIGLTGHDLIGIAQTGSGKTLAFLLPA 128

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  +     +   P+ LI+ PTREL  Q+ + F K+     L  A L GG     Q  +L
Sbjct: 129 IIHILAQLKQNADPQCLIMAPTRELTHQIYEQFTKFSVGSGLKAACLFGGQEKFIQKNQL 188

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   +LI  PGR++D    G   +  +  LV+DEADRMLDMGF P I+ I +     RQ
Sbjct: 189 NQHPHILIACPGRLIDLVESGSTTLKGVTFLVLDEADRMLDMGFEPSIRKIVAQTRAERQ 248

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT   E+Q ++ +F                   +            +     + +
Sbjct: 249 TMLFSATWPKEVQSLALDFCTQQPIHIQIGSLDLTSNRQIQQKVVILSKE-QKEDKLKEI 307

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  IIFC  K     L   L + G    ++HG+  Q  R  ++++FK+G   ++
Sbjct: 308 LKSLGTRKIIIFCQTKIKCDQLQLYLIQDGLRCKSLHGDKRQSERDFVMNSFKKGDTTVL 367

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHID 358
           VA+D+A+RGLDI D+  V NFD+P   E+Y+HRIGRTGRAG  G + +L  + ED K   
Sbjct: 368 VATDVASRGLDIKDIEFVINFDMPKMIEDYVHRIGRTGRAGAQGVSISLFDSYEDAKLAG 427

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +  + + G+LS L
Sbjct: 428 DLVGVLRESQNEVPGELSRL 447


>gi|34364998|emb|CAE46035.1| hypothetical protein [Homo sapiens]
          Length = 496

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 194/389 (49%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 56  SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 115

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 116 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 175

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 176 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 235

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 236 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKE 291

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 292 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 351

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 352 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 411

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 412 KACDESVLMDLKALLLEAKQKVPPVLQVL 440


>gi|158292622|ref|XP_314012.3| AGAP005130-PA [Anopheles gambiae str. PEST]
 gi|157017078|gb|EAA09455.3| AGAP005130-PA [Anopheles gambiae str. PEST]
          Length = 531

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 124/440 (28%), Positives = 205/440 (46%), Gaps = 13/440 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLGL+  +       G  +PTPIQ++ IP +LQ  D  G A+TG+GKT +F LP+L 
Sbjct: 8   KFSDLGLTYWITRQTEKLGLRRPTPIQVECIPRILQGQDCIGAAKTGSGKTFAFALPILQ 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L            L+L PT ELA Q+A+ F   G+  N  V ++ GG  +  ++++LE+
Sbjct: 68  KL---SEEPTANFALVLTPTHELAHQIAEQFIVAGQPMNARVCVVTGGTDYLIESQQLEK 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++  PGR+ DH              ++ +    +  G       + +     ++  
Sbjct: 125 RPHIIVAMPGRLADHLTGCNTYSFAALQFLVVDEADRMLCGSFDEDLMVINRFLPAKRQN 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET---IEHCFVATYAQYSKKCALLQQL 238
           LF +    +  K S  F       E +  S  A      +   +              + 
Sbjct: 185 LFFSATLKDFLKTSIVFPIADDVFEWSEQSPVATVETLDQRYLLCADYDRDTVMVEALRK 244

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +      + +IF N KK+   L  SL   GFS   +HG + QR R+  L+ FK   +++
Sbjct: 245 YKEDQEDASIMIFTNSKKDCQILSMSLNSFGFSNVCLHGFLRQRERVAALNKFKSKHVRI 304

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHI 357
           M+A+D+A+RGLDI DV  V N  +P +   YIHR+GRT RAGR G A +++    D++ +
Sbjct: 305 MIATDVASRGLDIHDVQLVVNHRLPKKPIEYIHRVGRTARAGRAGMAISILRFPRDLEAL 364

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE LI  K+   + D    +  +++I   Q   AR    I   +  FD RK  Y   +
Sbjct: 365 GEIEALINTKLTEYSVD----DRLVQRI-FMQVKVARAEAEINLDNKDFDERKHKYRRLR 419

Query: 418 SHIPLKESEKIS-KLQQDIQ 436
                 + +++  K ++D++
Sbjct: 420 WIQEGLDPDEMEAKWKEDMK 439


>gi|126739425|ref|ZP_01755118.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. SK209-2-6]
 gi|126719525|gb|EBA16234.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. SK209-2-6]
          Length = 468

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 137/370 (37%), Positives = 226/370 (61%), Gaps = 5/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ +GL   ++  + + G   PTPIQ + IP  L   DV G+AQTGTGKTA+F +P+++
Sbjct: 28  EFSSMGLPKHILTRLANMGLKDPTPIQARAIPHALNGEDVLGLAQTGTGKTAAFGVPLIS 87

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +     +   +  R L+L PTRELA Q+A+  +   +   + V L++GG+    Q  ++
Sbjct: 88  RMLDYGRKPAGKTVRGLVLAPTRELANQIAETLKALTEGTPMKVGLVVGGVSINPQISRI 147

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD  +R  L + + + LV+DEAD+MLD+GFI  ++ I++L+P  RQ
Sbjct: 148 ARGTDILVATPGRLLDILDRDALDLGSCDFLVLDEADQMLDLGFIHALRKISALLPEERQ 207

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  ++ +++ ++L+ P RI     +   +       + +     +   L + L
Sbjct: 208 TMLFSATMPKQMNEIANSYLKRPVRI---EVTPPGKPAAKVTQSVHFIAKAEKLSLLKEL 264

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  ++F   K  +  L   LEK GF+  AIHGN  Q  R + L+ FK G I+++
Sbjct: 265 LANHKDERTLVFGRTKYGMEKLMRVLEKAGFAAAAIHGNKSQGQRERALAAFKSGEIKVL 324

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIPDV  V+N+++PN  + Y+HRIGRT RAG+ G+A    A ++++ + A
Sbjct: 325 VATDVAARGLDIPDVKFVYNYELPNVPDAYVHRIGRTARAGKDGEAVAFCAPDEMEELKA 384

Query: 360 IEKLIEKKVD 369
           I+K+++  + 
Sbjct: 385 IQKVMKITIP 394


>gi|66816623|ref|XP_642321.1| hypothetical protein DDB_G0277857 [Dictyostelium discoideum AX4]
 gi|74997195|sp|Q54Y81|DDX23_DICDI RecName: Full=ATP-dependent RNA helicase ddx23; AltName:
           Full=ATP-dependent RNA helicase helB2; AltName:
           Full=DEAD box protein 23
 gi|60470121|gb|EAL68101.1| hypothetical protein DDB_G0277857 [Dictyostelium discoideum AX4]
          Length = 834

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 123/419 (29%), Positives = 212/419 (50%), Gaps = 29/419 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  L  +++ A+   GY KP+PIQ+++IP+ L   D+ GIA+TG+GKT +FV+PML 
Sbjct: 414 TWQESNLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPMLI 473

Query: 62  ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + K            P  L++ PTREL  Q+      + +++   V  L+GG   E Q 
Sbjct: 474 YISKQPRLTKDTEADGPYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGGQSIEDQA 533

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY---------- 166
            ++ +G +++I TPGR+ D   +  L++N    +V+DEAD M+D+GF P           
Sbjct: 534 YQVSKGCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQVTSVLDAMPS 593

Query: 167 -----------IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
                       +  +      R T+LFSATM   ++K+S+ +L+ P  I +       +
Sbjct: 594 SFLKSEDDEMAEKQESDRSHIYRTTILFSATMPPLVEKLSKKYLRRPCTITIGEAGKVVD 653

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
            I    +   ++  KK  L Q +          IIF N+KK+   +   LE+   S   +
Sbjct: 654 RIRQTVIFVKSENDKKEHLTQLIKDGPPPPI--IIFVNKKKHCDIIAPVLEECRVSYTIL 711

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           H    Q  R   L  FK+   ++++A+ +A+RG+ +  V HV NFD+P   E+Y HRIGR
Sbjct: 712 HSGRSQEQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIPKNIEDYTHRIGR 771

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ-HNHA 393
           TGRAG  G A + +  +D++ +  +++++    + +  +L       +K   ++ HN +
Sbjct: 772 TGRAGSAGLASSFITDKDVEIMYDLKQILTSTNNIVPIELLKHPSSQQKHGSSKDHNKS 830


>gi|238796726|ref|ZP_04640232.1| ATP-dependent RNA helicase srmB [Yersinia mollaretii ATCC 43969]
 gi|238719457|gb|EEQ11267.1| ATP-dependent RNA helicase srmB [Yersinia mollaretii ATCC 43969]
          Length = 441

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 141/442 (31%), Positives = 231/442 (52%), Gaps = 14/442 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP + 
Sbjct: 5   NFSELDLDERLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K+  L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I +   + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT   + +++  E  L  P  +E +      + I+  +        K        L
Sbjct: 185 LLFSATLEGEAIREFGERILNEPVELEADPSRRERKKIQQWYYRADDIEHKTAL--LVHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  ++  IIF   ++ V  L   L + G +   + G + Q  R + +    +G + ++
Sbjct: 243 LKQPEVQKSIIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDVASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHDHLLLGR 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           I + +++ +      +  L P       ++   ++      +K     +  K  S +K+ 
Sbjct: 363 IGRYLKEPLK--PRVIDELRP------TSKEPSSKSTGKPSKKVLAKRKELKEASKEKAK 414

Query: 420 IPL--KESEKISKLQQDIQEND 439
           + +  ++++ + K +Q  ++ D
Sbjct: 415 VKVRHRDAKNVGKRRQPKEKPD 436


>gi|312372006|gb|EFR20059.1| hypothetical protein AND_20736 [Anopheles darlingi]
          Length = 850

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 146/449 (32%), Positives = 222/449 (49%), Gaps = 24/449 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L+  +   V  A Y KPTP+Q   IP++L   D+   AQTG+GKTA+F++P+L 
Sbjct: 351 TFDDIELTEIIDNNVKLARYDKPTPVQKYAIPIILAGRDLMACAQTGSGKTAAFLVPILN 410

Query: 62  ILEKG-----------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
            + K              R + P  L+L PTRELA Q+ +  +K+     +  A+L GG 
Sbjct: 411 QMYKHGVSAPPPNRPMNRRKQYPLGLVLAPTRELATQIFEESKKFCYRSRMRPAVLYGGN 470

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L+RG  +++ TPGR+ D   RGK+ ++NI  LV+DEADRMLDMGF P I+ I
Sbjct: 471 NTHEQMRELDRGCHLIVATPGRLEDMITRGKVGLDNIRFLVLDEADRMLDMGFEPQIRRI 530

Query: 171 TSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                      RQTL+FSAT    +Q+++ +FL     + V    ST+  I         
Sbjct: 531 VEDSRMPVTGERQTLMFSATFPKAIQELASDFLYRYIFLAVGRVGSTSVNITQTIFWVEE 590

Query: 227 QYSKKCALLQQLLQSQDTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
              +   L      S     +      +IF   KK   +L   L    + V +IHG+  Q
Sbjct: 591 NIKRSHLLDLLSSISLQNEGDAANSLTLIFVETKKAADSLEEFLYSYDYPVTSIHGDRSQ 650

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
             R + L  F+ G   ++VA+ +AARGLDIP+V HV NFD+P+  E Y+HRIGRTGR G 
Sbjct: 651 DEREEALRLFRCGRCPILVATAVAARGLDIPNVKHVINFDLPSEVEEYVHRIGRTGRMGN 710

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            G A +   +++    + + +L+ +    + G L  +            N        PQ
Sbjct: 711 LGTATSFFNEKNRNVANGLVRLLAETGQEIPGFLEDMTSSR----GFGGNRRGGGGRYPQ 766

Query: 402 KSTGFDRRKKNYSSQKSHIPLKESEKISK 430
           +S G     ++Y  Q ++     S +  +
Sbjct: 767 RSGGSSFGSRDYRQQNNNTRSTASSRDHR 795


>gi|145506703|ref|XP_001439312.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406496|emb|CAK71915.1| unnamed protein product [Paramecium tetraurelia]
          Length = 493

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 95/367 (25%), Positives = 183/367 (49%), Gaps = 9/367 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           +FA +   L+  ++  +  +GY KPTPIQ+  IP++LQ+ ++  IA TG+GKT +F LP 
Sbjct: 96  NFAKMKNYLNQDLMNQLTKSGYQKPTPIQMVAIPIILQKKNLIAIAPTGSGKTCAFALPT 155

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  LE    +   PR L+  P +ELA Q+   F K+ K   +     +       +    
Sbjct: 156 LHNLEN--HKEGGPRCLVFAPAQELADQLYKEFNKFNKELKIKQIQEMNR----EKQAFK 209

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-VPFTR 178
           +    + I     +        + ++ +E +++DEAD+  ++G +  ++ +  +      
Sbjct: 210 QAWNHIDILISSPLKFLKLHKVVDLSTVEYVIMDEADKYFELGLLAQVKQLLRILESLQI 269

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             + FSAT+ + ++ +    L +P +I +   +     I+        +Y K   +   +
Sbjct: 270 TYMFFSATLPEPVEDIYRELLIDPIKIMIGGRNHVLSRIDQQLRYVSNEYGKIQEIKNLI 329

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            + Q T    +   ++ +    +    + +   V  IHG+++ ++R +I+  F +GTI +
Sbjct: 330 NEGQMTPPVLVFVQSKTRAEALMYEIEQLKVIRVNCIHGDMESKTRQEIVEQFHKGTIWM 389

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +D+ ARG+D  DV  V N+D P     Y+HR+GRTGRAG+ GKA TL   +D   + 
Sbjct: 390 LICTDMMARGIDFKDVQLVINYDFPQSMITYVHRVGRTGRAGKQGKAITLFTDDDKSMLR 449

Query: 359 AIEKLIE 365
           ++  +++
Sbjct: 450 SLANVLK 456


>gi|325474437|gb|EGC77624.1| DEAD/DEAH box family ATP-dependent RNA helicase [Treponema
           denticola F0402]
          Length = 570

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 138/406 (33%), Positives = 216/406 (53%), Gaps = 11/406 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           + F +LGL   V+ AV   G+ +PTPIQ+  IP +L    +V   A+TGTGKTA+F LP+
Sbjct: 3   ITFKELGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGLPL 62

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  L     +VR    LIL PTRELA QVA   E +       +A + GG     Q + L
Sbjct: 63  VQELRSNTGKVRA---LILVPTRELAVQVAGELESFRIEEYPRIATVYGGAAIGPQLRSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++++ TPGRI+DH  RG L + +IE  ++DEAD ML+MGFI  I+NI S      +
Sbjct: 120 KTGVEIVVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLNMGFIEDIENIFSKANPEAR 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  ++  ++ +F+ + + +E       A   E  F         +  +     
Sbjct: 180 VLMFSATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVVREGDKTEALVRLIDT 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   G++FC  K +  ++   L+++ +   A+HG+I Q  R KIL  F+    +++
Sbjct: 240 SPNFY---GLVFCQTKIDADDVAKELDERHYEAAALHGDIPQSQREKILERFRSKKTRIL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV N+ +P     Y HRIGRTGRAG  G A + V   ++K I+ 
Sbjct: 297 VATDVAARGIDIEGISHVVNYAIPYDGPTYTHRIGRTGRAGAAGVAVSFVRPNEVKRIEY 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE--KIDIAQHNHARKNNPIPQKS 403
           + K    + +   G + S+   +E  +  I +   A+    I ++ 
Sbjct: 357 LRKH--ARGELKEGKIPSIEQVIEIKRTRILKETAAQIEKRISEEK 400


>gi|302818865|ref|XP_002991105.1| hypothetical protein SELMODRAFT_132834 [Selaginella moellendorffii]
 gi|300141199|gb|EFJ07913.1| hypothetical protein SELMODRAFT_132834 [Selaginella moellendorffii]
          Length = 601

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 123/406 (30%), Positives = 213/406 (52%), Gaps = 16/406 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     ++  + +    +PTPIQ++ +P++L   D+ GIA TG+GKT  FVLP++ 
Sbjct: 157 NFKDMRFPDPILRKLKEKSITRPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPLIM 216

Query: 62  ILEKGRARV-----RMPRTLILEPTRELAAQVADNFEKYG------KNYNLTVALLIGGI 110
           +  +            P  L++ P+RELA Q  D  +++           L   L IGGI
Sbjct: 217 LALQEEQSSSLGGGEGPFGLVVCPSRELARQTFDVVQEFTNVLREKNYPELRSMLCIGGI 276

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + +++G  +++ TPGR+ D   + K+ ++  + L +DEADR++D+GF   I+ +
Sbjct: 277 DMRSQLEVVKKGVHIVVATPGRLKDMLAKKKMNLDRCKYLTLDEADRLIDLGFEEDIREV 336

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 337 FDHFKAQRQTLLFSATMPKKIQN----FAKSALVKPVVVNVGRAGAANLDVIQEVEYVKQ 392

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IFC  K +V ++   L  +G    AIHG  DQ  R   +++
Sbjct: 393 EAKIVYLLECLQKTPPPVLIFCENKSDVDDIHEYLLVKGVGAVAIHGGKDQEEREYAIAS 452

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK+G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A + + 
Sbjct: 453 FKQGKKDVLVATDIASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATSFIN 512

Query: 351 KEDIKH-IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           K   +  +  ++ L+++    +   L++L+ P++ ++        K
Sbjct: 513 KNQSETILLDLKHLLKEARQRIPPVLATLDDPMDNVEEVARASGVK 558


>gi|302819961|ref|XP_002991649.1| hypothetical protein SELMODRAFT_236355 [Selaginella moellendorffii]
 gi|300140498|gb|EFJ07220.1| hypothetical protein SELMODRAFT_236355 [Selaginella moellendorffii]
          Length = 585

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 123/406 (30%), Positives = 213/406 (52%), Gaps = 16/406 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     ++  + +    +PTPIQ++ +P++L   D+ GIA TG+GKT  FVLP++ 
Sbjct: 141 NFKDMRFPDPILRKLKEKSITRPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPLIM 200

Query: 62  ILEKGRARV-----RMPRTLILEPTRELAAQVADNFEKYG------KNYNLTVALLIGGI 110
           +  +            P  L++ P+RELA Q  D  +++           L   L IGGI
Sbjct: 201 LALQEEQSSSLGSGEGPFGLVVCPSRELARQTFDVVQEFTNVLREKNYPELRSMLCIGGI 260

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + +++G  +++ TPGR+ D   + K+ ++  + L +DEADR++D+GF   I+ +
Sbjct: 261 DMRSQLEVVKKGVHIVVATPGRLKDMLAKKKMNLDRCKYLTLDEADRLIDLGFEEDIREV 320

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 321 FDHFKAQRQTLLFSATMPKKIQN----FAKSALVKPVVVNVGRAGAANLDVIQEVEYVKQ 376

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IFC  K +V ++   L  +G    AIHG  DQ  R   +++
Sbjct: 377 EAKIVYLLECLQKTPPPVLIFCENKSDVDDIHEYLLVKGVGAVAIHGGKDQEEREYAIAS 436

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK+G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A + + 
Sbjct: 437 FKQGKKDVLVATDIASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATSFIN 496

Query: 351 KEDIKH-IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           K   +  +  ++ L+++    +   L++L+ P++ ++        K
Sbjct: 497 KNQSETILLDLKHLLKEARQRIPPVLATLDDPMDNVEEVARASGVK 542


>gi|226952982|ref|ZP_03823446.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter sp. ATCC
           27244]
 gi|294650564|ref|ZP_06727921.1| ATP-dependent RNA helicase RhlB [Acinetobacter haemolyticus ATCC
           19194]
 gi|226836303|gb|EEH68686.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter sp. ATCC
           27244]
 gi|292823561|gb|EFF82407.1| ATP-dependent RNA helicase RhlB [Acinetobacter haemolyticus ATCC
           19194]
          Length = 383

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 127/372 (34%), Positives = 197/372 (52%), Gaps = 6/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++  A+   G+ + TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 5   FETLKLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 63  LEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN-K 117
           L     + +     PR LIL PTRELA Q+  + +   K  NL +  L+GG+ F+ Q   
Sbjct: 65  LLNNPIQEQRFRGEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKM 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P  
Sbjct: 125 LDRNFVDIIVATPGRLIDFVEQKEVWLDRIEFLVIDEADRLLDMGFIPSVKRIVRYSPSK 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q      + T     V     Q              +T        Y    +    L Q
Sbjct: 185 EQRQTLMFSAT-FSYDVLNLARQWLFEPVTVEIEPEQKTNVDVEQRVYVVAKEDKYKLLQ 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   + +   +IF N++  V  L   L++ G+ V  + G I Q  R+K+L  FK+G   
Sbjct: 244 DILRDEPIDKVMIFANRRDQVRRLYDHLKRDGYKVGMLSGEIAQDKRLKMLDQFKQGKHN 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +M+A+D+A RG+ +  V HV NF +P ++++Y+HRIGRTGRAG  G + + ++++D  ++
Sbjct: 304 IMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDAFYL 363

Query: 358 DAIEKLIEKKVD 369
             IEK I KK+ 
Sbjct: 364 PEIEKAIGKKLP 375


>gi|281422387|ref|ZP_06253386.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
           DSM 18205]
 gi|281403550|gb|EFB34230.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
           DSM 18205]
          Length = 657

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 136/385 (35%), Positives = 219/385 (56%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F +LG+S ++  A+ + G+  P P+Q + IP +L    DV  +AQTGTGKTAS+ +P++
Sbjct: 3   TFEELGVSEEIRRAIEELGFENPMPVQEEVIPYLLGNKNDVIALAQTGTGKTASYGIPVI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKL 119
              +    + +     IL PTREL  Q+AD+   + K  +   +A + GG    +Q + L
Sbjct: 63  QKTDASSKQTQAV---ILSPTRELCLQIADDLNSFAKYIDGLHIAAVYGGTDIGSQIRTL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G  +++ TPGR+LD  NRG   + N+  +V+DEAD ML+MGF   I  I   VP  R 
Sbjct: 120 KHGVQIIVATPGRLLDLINRGVAQLENVNNVVLDEADEMLNMGFSESINAIFENVPEDRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM+ +++K++ N+L + K I V + +  AE + H     Y   +K   L  + +
Sbjct: 180 TLLFSATMSKDIEKIALNYLHDHKEIVVGSRNEGAEHVNH---IYYLVNAKDKYLALKRV 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIFC  K    ++   L K G++  A+HG++ Q+ R   +  F+  T+Q +
Sbjct: 237 VDFYPRIFAIIFCRTKLETQDIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRNHTVQFL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P+   +Y HR GRTGRAG+ G + +++   +   +  
Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDVASYTHRSGRTGRAGKKGTSISIIHTREKFKVRQ 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           IEK I K  ++++G L +     +K
Sbjct: 357 IEKQIGK--EFVDGVLPTPEEICKK 379


>gi|188529679|gb|ACD62526.1| Vasa short form [Silurus meridionalis]
          Length = 641

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 140/458 (30%), Positives = 228/458 (49%), Gaps = 33/458 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 203 MTFEEAQLCETLNRNVAKSGYVKPTPVQKHGIPIIFAGRDLMACAQTGSGKTAAFLLPIL 262

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + V+ P  +I+ PTREL +Q+     K+     +   ++ GG     
Sbjct: 263 QQLMNDGVATSKFSEVQEPEVIIVAPTRELISQIYLEARKFAYGTCVRPVVVYGGTSTGF 322

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
             +++ +G +VL  TPGR+LD   RG++ ++ +  LV+DEADRMLDMGF P ++      
Sbjct: 323 TIREVLKGCNVLCGTPGRLLDIIGRGEVGLSKVRYLVLDEADRMLDMGFEPTMRKLVNSP 382

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++Q+++ +FL+             A +     +    +YSK
Sbjct: 383 GMPPKEERQTLMFSATYPEDIQRLASDFLKVDYLFLAVGVVGGACSDIEQNIIQVTRYSK 442

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  LL+ L  +    +  ++F   K++   +   L ++     +IHG+ +QR R K L +
Sbjct: 443 REQLLELLKATGT--ERTMVFVETKRSADFIATFLCQEKVPTTSIHGDREQREREKALGD 500

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI  V +V NFD+P   + Y+HRIGRTGR G  G+A +   
Sbjct: 501 FRTGQCPVLVATSVAARGLDIEQVQNVINFDLPKYIDEYVHRIGRTGRCGNTGRAVSFFD 560

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            E D     A+       V  L+G    +   LE++  + H            +TGF   
Sbjct: 561 PESDTPLARAL-------VKVLSGAKQEVPSWLEEVAYSAH-----------GTTGFSPH 602

Query: 410 KKNYSSQKSHIP--LKESEKISKLQQDIQENDADSLGF 445
            K ++S  +      +++ +     Q     D D   +
Sbjct: 603 GKVFASTDTRRGGFFQKNSEPQPAAQSTSAGDDDDEDW 640


>gi|188529677|gb|ACD62525.1| Vasa [Silurus meridionalis]
          Length = 662

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 140/458 (30%), Positives = 228/458 (49%), Gaps = 33/458 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 224 MTFEEAQLCETLNRNVAKSGYVKPTPVQKHGIPIIFAGRDLMACAQTGSGKTAAFLLPIL 283

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + V+ P  +I+ PTREL +Q+     K+     +   ++ GG     
Sbjct: 284 QQLMNDGVATSKFSEVQEPEVIIVAPTRELISQIYLEARKFAYGTCVRPVVVYGGTSTGF 343

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
             +++ +G +VL  TPGR+LD   RG++ ++ +  LV+DEADRMLDMGF P ++      
Sbjct: 344 TIREVLKGCNVLCGTPGRLLDIIGRGEVGLSKVRYLVLDEADRMLDMGFEPTMRKLVNSP 403

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++Q+++ +FL+             A +     +    +YSK
Sbjct: 404 GMPPKEERQTLMFSATYPEDIQRLASDFLKVDYLFLAVGVVGGACSDIEQNIIQVTRYSK 463

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  LL+ L  +    +  ++F   K++   +   L ++     +IHG+ +QR R K L +
Sbjct: 464 REQLLELLKATGT--ERTMVFVETKRSADFIATFLCQEKVPTTSIHGDREQREREKALGD 521

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI  V +V NFD+P   + Y+HRIGRTGR G  G+A +   
Sbjct: 522 FRTGQCPVLVATSVAARGLDIEQVQNVINFDLPKYIDEYVHRIGRTGRCGNTGRAVSFFD 581

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            E D     A+       V  L+G    +   LE++  + H            +TGF   
Sbjct: 582 PESDTPLARAL-------VKVLSGAKQEVPSWLEEVAYSAH-----------GTTGFSPH 623

Query: 410 KKNYSSQKSHIP--LKESEKISKLQQDIQENDADSLGF 445
            K ++S  +      +++ +     Q     D D   +
Sbjct: 624 GKVFASTDTRRGGFFQKNSEPQPAAQSTSAGDDDDEDW 661


>gi|118359808|ref|XP_001013142.1| CLN3 protein [Tetrahymena thermophila]
 gi|89294909|gb|EAR92897.1| CLN3 protein [Tetrahymena thermophila SB210]
          Length = 1138

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 119/381 (31%), Positives = 198/381 (51%), Gaps = 4/381 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F  LG   +++  +   G+ KPT IQ + +P  L   D+ G+A+TG+GKT S++ P  
Sbjct: 62  VSFGHLGFDEELMRQITKLGFEKPTQIQCQALPCGLSGRDIVGVAKTGSGKTVSYLWPLL 121

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  + ++   +   P  LIL PTREL  QV    ++Y K YN++V  L+GG     Q K 
Sbjct: 122 IHILDQRELEKNEGPIGLILAPTRELCQQVYTESKRYAKIYNISVGALLGGENKHEQWKM 181

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G ++LI TPGR+++   +    +     +VIDEAD+M  MGF   I++I   +   R
Sbjct: 182 LKAGVEILIATPGRLMEMIQKKATNLRRCTYVVIDEADKMFSMGFEKQIRSIMQQIRPDR 241

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLF+AT+  ++Q +  + L+NP  I++   +   E I    +       K    +   
Sbjct: 242 QTLLFTATLKKKIQNLVMDVLRNPVTIKIGGENQANEDIRQEPIIFKDSNFK-DQWILNN 300

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L         +IF N   N   L   ++++ +    +      +S    + N  +    L
Sbjct: 301 LNLCLQKGKVLIFVNHITNCNKLSELIKQRLYLEALVLHGDKIQSERTDIINKFKAAKNL 360

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH-GKAFTLVAKEDIKHI 357
           ++A+D+A+RGLDIP++  V N+D+P   + YIHRIGRTGRAG   G A++L+   + K  
Sbjct: 361 LIATDVASRGLDIPEIKTVINYDLPQDTDTYIHRIGRTGRAGATDGTAYSLILMSESKFA 420

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K++E     +  +L  +
Sbjct: 421 SDMLKVMEISGQPVPPNLEEV 441


>gi|42527612|ref|NP_972710.1| DEAD-box ATP dependent DNA helicase [Treponema denticola ATCC
           35405]
 gi|41818440|gb|AAS12629.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Treponema
           denticola ATCC 35405]
          Length = 570

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 138/406 (33%), Positives = 216/406 (53%), Gaps = 11/406 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           + F +LGL   V+ AV   G+ +PTPIQ+  IP +L    +V   A+TGTGKTA+F LP+
Sbjct: 3   ITFKELGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGLPL 62

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  L     +VR    LIL PTRELA QVA   E +       +A + GG     Q + L
Sbjct: 63  VQELRSNTGKVRA---LILVPTRELAVQVAGELESFRIEEYPRIATVYGGAAIGPQLRSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++++ TPGRI+DH  RG L + +IE  ++DEAD ML+MGFI  I+NI S      +
Sbjct: 120 KTGVEIVVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLNMGFIEDIENIFSKANPEAR 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  ++  ++ +F+ + + +E       A   E  F         +  +     
Sbjct: 180 VLMFSATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVVREGDKTEALVRLIDT 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   G++FC  K +  ++   L+++ +   A+HG+I Q  R KIL  F+    +++
Sbjct: 240 SPNFY---GLVFCQTKIDADDVAKELDERHYEAAALHGDIPQSQREKILERFRSKKTRIL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV N+ +P     Y HRIGRTGRAG  G A + V   ++K I+ 
Sbjct: 297 VATDVAARGIDIEGISHVVNYAIPYDGPTYTHRIGRTGRAGAAGVAVSFVRPNEVKRIEY 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE--KIDIAQHNHARKNNPIPQKS 403
           + K    + +   G + S+   +E  +  I +   A+    I ++ 
Sbjct: 357 LRKH--ARGELKEGKIPSIEQVIEIKRTRILKETAAQIEKRISEEK 400


>gi|260796379|ref|XP_002593182.1| hypothetical protein BRAFLDRAFT_209728 [Branchiostoma floridae]
 gi|229278406|gb|EEN49193.1| hypothetical protein BRAFLDRAFT_209728 [Branchiostoma floridae]
          Length = 614

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 143/433 (33%), Positives = 225/433 (51%), Gaps = 20/433 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DL L   +   +  + Y+KPTP+Q   IP+     D+   AQTG+GKTA+F++P+L+
Sbjct: 139 EFTDLDLGEIISNNIKLSNYMKPTPVQKYAIPIARANRDLMACAQTGSGKTAAFLIPILS 198

Query: 62  ILEKGRA---------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
           ++ +                  R R P  L+L PTRELA+Q+ D  +K+    ++   ++
Sbjct: 199 LIYENGPQGLPQHGRQYGGSGSRKRYPLALVLAPTRELASQIYDESKKFAYRSHVRPCVV 258

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RG++ ++ I+ L++DEADRMLDMGF P 
Sbjct: 259 YGGADIGGQMRDLERGCHLLVGTPGRLVDMMERGRIGLDYIKYLILDEADRMLDMGFEPQ 318

Query: 167 IQNITSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           R+T++FSAT   E+Q ++ +FL N   + V    ST++ I    V
Sbjct: 319 IRRIVEQDTMPGTGKRRTMMFSATFPKEIQMLARDFLDNYIFLAVGRVGSTSDNI-TQKV 377

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
               +  K+  LL  L  +       + F   KK   +L   L  +G+ V +IHG+  QR
Sbjct: 378 VWVDEQDKRSFLLDLLNATGKEDSLTLTFVETKKGADSLEAFLYSEGYPVSSIHGDRSQR 437

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R   L  F+ G   ++VA+ +AARGLDIP+V HV NFD+P+  + Y+HRIGRTGR G  
Sbjct: 438 EREDALMTFRTGVTPILVATAVAARGLDIPNVKHVINFDLPSDIDEYVHRIGRTGRVGNL 497

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           G A +    ++   +  +  ++ +    L   L S+     +   +  N  R  +     
Sbjct: 498 GLATSFFNDKNRNVVRDLVDILIESKQELPPWLESMAYEERRQQSSGRNRGRNRSAFQGG 557

Query: 403 STGFDRRKKNYSS 415
               D R++N S 
Sbjct: 558 FGSRDYRQQNRSG 570


>gi|297595326|gb|ADI48178.1| vasa [Crepidula fornicata]
          Length = 502

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 123/383 (32%), Positives = 205/383 (53%), Gaps = 8/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL P  +  V  AGY KPTPIQ   IP +L   D+ G AQTG+GKTA+F+LP+LT 
Sbjct: 59  FEDAGLLPTFLKNVQRAGYTKPTPIQKHAIPSILAGRDLMGCAQTGSGKTAAFILPVLTA 118

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +          +  + P+T+++ PTRELA+Q+     K+    ++   ++ GG+    Q 
Sbjct: 119 MVKEGLTCSPMSEFQEPQTIVVAPTRELASQIYTEARKFALRTDVRPVVVYGGVSVAHQL 178

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +++E GA++++ TPGR+LD   RGK+ +  ++ L++DEADRMLDMGF P I+ +   +  
Sbjct: 179 RQVESGANLVVGTPGRLLDFIERGKISVKKVKFLILDEADRMLDMGFEPSIRKLVESLGM 238

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             ++   +   +   +   +    +     +                T+ +  +      
Sbjct: 239 PSKSERQTLMFSATFKAEIQQLAADFMNDYLFITVGIVGGACSDVEQTFLEVDRLQKREY 298

Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                  +  N + +F  QK+N   L   L + G+   +IHG+  QR R + L +FK G 
Sbjct: 299 LCDILNSSGTNRVLVFVGQKRNADFLASFLSQSGYPTTSIHGDRLQREREEALMDFKRGK 358

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DI 354
             +++A+++AARGLDIPDV HV N+D+P   + Y+HRIGRTGR G  GKA +  +++ D 
Sbjct: 359 SPVLIATNVAARGLDIPDVTHVVNYDLPTDIDEYVHRIGRTGRCGNLGKATSFYSQDTDF 418

Query: 355 KHIDAIEKLIEKKVDWLNGDLSS 377
               ++ K++ +    +   L++
Sbjct: 419 ALASSLVKILSEARQEVPDWLTA 441


>gi|73965239|ref|XP_861886.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 14 [Canis
           familiaris]
          Length = 588

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 126/441 (28%), Positives = 208/441 (47%), Gaps = 32/441 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +      V+  +    + +PT IQ +  P+ L   D+ G+AQTG+GKT S++LP +
Sbjct: 94  LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA QV                              
Sbjct: 154 VHINHQPFLERGDGPICLVLAPTRELAQQVQQ--------------------------VA 187

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            E   ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 188 AEYCVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 247

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++E+FL++   I +     +A       V       K   L++ +
Sbjct: 248 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 307

Query: 239 LQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   +     I+F   K+    L   + + G+    IHG+  Q+ R  +L+ FK G   
Sbjct: 308 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 367

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     +IK +
Sbjct: 368 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 427

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNYS 414
             +  ++ +    +N  L  L                  R++     K  GF+  +   +
Sbjct: 428 SDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDREN 487

Query: 415 SQKSHIPLKESEKISKLQQDI 435
             + +  L + +  +K Q  +
Sbjct: 488 YDRGYSSLLKRDFGAKTQNGV 508


>gi|261189897|ref|XP_002621359.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis SLH14081]
 gi|239591595|gb|EEQ74176.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis SLH14081]
          Length = 834

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 149/453 (32%), Positives = 221/453 (48%), Gaps = 17/453 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L 
Sbjct: 312 SFQAFSLSRPILRGLTSVGFTTPTPIQQKTIPVALLGKDVVGGAVTGSGKTGAFIIPILE 371

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++
Sbjct: 372 RLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKK 431

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 432 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 491

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+ + K+    L  P R+ V+    T  T+   FV        K      +L 
Sbjct: 492 MLFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLVQEFVRLRPGREDKRLGYLMVLC 551

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   KK    +       G     +HG++ Q  R+K + +F++G +  ++
Sbjct: 552 KTIYKDRVIIFFRAKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVESFRDGKVSFLL 611

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A TL A+ D K + A 
Sbjct: 612 ATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKAA 671

Query: 361 EK---LIEKKVDWLNGDLSSLNPPLEKIDIAQHNH-------------ARKNNPIPQKST 404
            K       K+     D +  +    K++  Q                A+    + + S 
Sbjct: 672 VKTGRAQGAKIVSRPIDSAEADKWAAKVEEMQEEVKEILKEEKEEKQLAQAEMEVTRGSN 731

Query: 405 GFDRRKKNYSSQKSHIPLKESEKISKLQQDIQE 437
             +  K+  S  K      E EK+   Q+ ++E
Sbjct: 732 LINHEKEIMSRPKRTWFETEKEKLQAKQRSLEE 764


>gi|312602490|ref|YP_004022335.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
 gi|312169804|emb|CBW76816.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
          Length = 630

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 154/488 (31%), Positives = 243/488 (49%), Gaps = 44/488 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLSP++V A+  AGY  PTP+Q + IP  L   D+   + TG+GKTA+F+LP +  
Sbjct: 133 FIALGLSPEIVSALTAAGYQAPTPVQQRAIPAALAGRDLLVSSPTGSGKTAAFMLPAIER 192

Query: 63  L-----------------------------EKGRARVRMPRTLILEPTRELAAQVADNFE 93
                                          +    V  P  L+L PTRELA QV     
Sbjct: 193 FAQMQKAGTLGQRANQPVHQAQRGDRGERRHRREQPVARPALLVLTPTRELAMQVTTAAT 252

Query: 94  KYGKNYNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVI 152
            YGK+        ++GG+ +  Q   L +  ++L+ TPGR++DH  RG++ ++ +++LV+
Sbjct: 253 TYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQMLVL 312

Query: 153 DEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS 212
           DEADRMLDMGFI  I+ I    P TRQTLLFSAT+  ++  +++ FL + +RIE+     
Sbjct: 313 DEADRMLDMGFIEDIEAIIDRTPATRQTLLFSATLDGKVGSLAQRFLSDAERIEIRREPE 372

Query: 213 TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
           +   I         +  K    L   L +   +   I+F   K +   +   L + GF+ 
Sbjct: 373 SRANIAQSVHYVDDRAHKDR--LLTHLLADGALDQAIVFTATKNDADVIAARLAEDGFAS 430

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
            A+HG++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HR
Sbjct: 431 AALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHR 490

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAGR G A +LV   ++  +  IE+ +   +      ++   P   K   +    
Sbjct: 491 IGRTGRAGRSGIAVSLVHHAEVGTLKRIERFVRTPLPV--NVIAGFEP---KRAPSTRAP 545

Query: 393 ARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAF 452
           AR+  P      G  R    Y  + +      +   +   +   E      G+RG     
Sbjct: 546 ARRGAPP----RGNGRGAGGYQGRGTGNGYGNARHGAGSSR---EGGGRDAGYRGGFSDA 598

Query: 453 MLPKNRGK 460
               +RG+
Sbjct: 599 RASNDRGR 606


>gi|62896755|dbj|BAD96318.1| DEAD-box protein abstrakt variant [Homo sapiens]
          Length = 622

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 194/389 (49%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 182 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 361

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 362 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKE 417

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGNATTFIN 537

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 538 KACDESVLMDLKALLLEAKQKVPPVLQVL 566


>gi|319955577|ref|YP_004166844.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM
           14237]
 gi|319424237|gb|ADV51346.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM
           14237]
          Length = 449

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 139/435 (31%), Positives = 222/435 (51%), Gaps = 6/435 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L  ++  A+ D  +  PTPIQ     +V+   D+ GIAQTGTGKT +++LP+L 
Sbjct: 3   SFEDFNLKKQLNYAIEDLKFSAPTPIQEAAFSVVMSGKDIVGIAQTGTGKTMAYMLPILQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +     +   PR L+L PTREL  QV +N E + K  N+ V  + GG     Q ++  +
Sbjct: 63  EITFS--KQIHPRVLVLVPTRELVLQVVENIESFAKYINIRVLGVYGGTNINTQKQQCAQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+L+ TPGR+ D      + +  ++ LVIDE D MLD+GF   + N+  L+P  RQ +
Sbjct: 121 GTDILVATPGRLYDLALSKAVKLKEVKKLVIDEVDVMLDLGFRFQLINLFDLLPARRQNI 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATMTD++  + ++F   P+++ +    +  + I+    A    Y+K   L++ L   
Sbjct: 181 MFSATMTDDVDALIDDFFTAPEKVSIAVSGTPLDNIKQVCYAVPNFYTKINLLIRLLKDK 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  +   N++             G   C IH N  Q  RM+ +  F EG  +++V 
Sbjct: 241 DTYQKVLVFVSNKRFADKVFEEMEVAFGNESCVIHSNKTQNYRMRSIRQFDEGKNRILVT 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD+  + HV NFD PN  ENY+HRIGR+GRA   G +     +++    +AIE
Sbjct: 301 TDVMARGLDLDKITHVINFDTPNYPENYMHRIGRSGRAEHQGNSVLFYTEKEEPLKEAIE 360

Query: 362 KLIEKKVDWL----NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            L++ ++  +    N +LS      E+  I + ++  +N    Q S    + K    +Q 
Sbjct: 361 ALMDYEIPLMAIPENVELSEELIAEERPRIIEADNPNQNTLDSQGSFHEKKEKNKKENQG 420

Query: 418 SHIPLKESEKISKLQ 432
                  ++K  K Q
Sbjct: 421 GSYQRIIAQKYKKPQ 435


>gi|37677117|ref|NP_937513.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|37201662|dbj|BAC97483.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 402

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 148/403 (36%), Positives = 222/403 (55%), Gaps = 7/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL   +  A+   GY KPT IQ + IP++L+  D+   AQTGTGKTASFVLPML
Sbjct: 5   MSFTQLGLCASLTDALDTLGYPKPTRIQTQAIPVILEGQDLIAAAQTGTGKTASFVLPML 64

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G+  + +  R LIL PTRELA QV +  ++YG+N  L    + GG+  + Q + L
Sbjct: 65  EKLRHGQTQKKKRIRALILVPTRELAIQVDEKIKQYGQNLALRSLAMFGGVDEKTQKQAL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +    IE+LV+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 125 IEGLDILVATPGRLLDMYGQRAVYFEEIEMLVLDEADRMLDMGFIDDINKILDRLPENIQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++++++ ++++ + NP  I +    ++   IE   +                 
Sbjct: 185 HLLFSATLSNKVRDLAKSAIHNPFEISIAAKQASKSNIEQWIITVDKDQKSALLSHL--- 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++     +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 242 IKENQWDQTLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLEDFKAGKIKYL 301

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A +LV+K++ K++  
Sbjct: 302 VSTGVAARGIDIEALPRVVNYDLPFPADEYVHRIGRTGRANAKGEAISLVSKDNFKNLCM 361

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE-KIDIAQHNHARKNNPIPQ 401
           IE  +   ++    ++    P     I I  +    K N  P+
Sbjct: 362 IESRLGHLLER--REVEGFTPKKAVPISILNYVPKHKRNNQPE 402


>gi|153005404|ref|YP_001379729.1| DEAD/DEAH box helicase domain-containing protein [Anaeromyxobacter
           sp. Fw109-5]
 gi|152028977|gb|ABS26745.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp.
           Fw109-5]
          Length = 680

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 126/371 (33%), Positives = 209/371 (56%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  V  A+ + GY +PTP+Q+ T   V    DV   ++TGTGKTA+F +P+L 
Sbjct: 21  SFDELGLSEPVRRAIAEHGYERPTPVQVSTFRPVRDGKDVIVRSKTGTGKTAAFAIPILE 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  GR R   P  L++ PTRELA QVA  F    K+ +L+V  + GG     Q +KLE 
Sbjct: 81  RIADGRRR---PSALVMCPTRELAIQVAQEFTALAKHRDLSVVAVYGGASMGEQLQKLEA 137

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA++++ TPGRI DH  R  L ++   +  +DEAD ML+MGF   +  I   +P   Q L
Sbjct: 138 GAEIIVGTPGRIYDHIRRRTLKLDETMVCCLDEADEMLNMGFFEEVTRILDNLPKDCQQL 197

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  +++++  ++L +P+ I ++    + E I +        Y K        +  
Sbjct: 198 LFSATVPADIEQIIRDYLTDPETILLSGDEYSVENIHNVMYPAVDAYPKPR--NLLYMIE 255

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  I+FCN + +   +   L + G+    ++G++ Q+ R ++++  K G ++ MVA
Sbjct: 256 MEEPETAIVFCNTRNDTSLVAAVLNRNGYDAELLNGDLPQKERERVMAKVKRGEVRFMVA 315

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI D+ HV N+ +P     ++HR+GRTGR G+ G + ++V+  +I  + A++
Sbjct: 316 TDIAARGIDISDLTHVINYSLPEDPAVFLHRVGRTGRIGKKGTSLSIVSGAEIHTLTALQ 375

Query: 362 KLIEKKVDWLN 372
           K      +   
Sbjct: 376 KKFGIAFEEKK 386


>gi|42521938|ref|NP_967318.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39574468|emb|CAE77972.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 473

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 147/445 (33%), Positives = 235/445 (52%), Gaps = 20/445 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L+P ++ A+      KPTP+Q + IP  L   D+  IAQTG+GKT +F L +LT
Sbjct: 34  TFQEMNLAPVLLPALTKMKISKPTPVQSQAIPASLDGSDIIAIAQTGSGKTLAFALSLLT 93

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +    R LIL P+RE+A Q+   F +      ++V L IGG     Q  +L++
Sbjct: 94  TLQ----KKPEARGLILVPSREMAQQIYKVFLELCAEMPVSVCLAIGGTTGSKQANQLKK 149

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+ DH +  KLL+ N+E++V+DEADRMLDMGF P ++ I S +   RQT+
Sbjct: 150 NPRLIIATPGRMNDHLSGNKLLLQNVEVIVLDEADRMLDMGFAPQLRTIQSTLRGPRQTM 209

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSA+    ++ +++ F++    +  +     AE              +     + L + 
Sbjct: 210 MFSASFGSNVESIAQLFMKPDVVMVRSE---KAEAPVESLKQKVLFLDRSMKNDRLLDEL 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T    I+F   ++N   + + L++ GFS   IHG + Q  R +++  F+EG I+++VA
Sbjct: 267 NATRGGVIVFTGNQENCEAVGNYLKEYGFSTDLIHGGLSQGQRNRVVRGFREGEIRIVVA 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARGLD+P V HV NFD+P ++E+++HRIGRT RAGR G+A T V   D +    I+
Sbjct: 327 TDLLARGLDVPHVDHVVNFDLPFQSEDFLHRIGRTARAGRGGEAITFVTPSDTRMYAKIK 386

Query: 362 KLI----EKKVDWLNGDLS-----SLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK- 411
             +    E KVD     +        N P +  + A+ N   K   + + +     + K 
Sbjct: 387 GYLQGAQEIKVDPTFAFIDRSKKFDKNKPAKGNEPARRNAPGKPQAVKKAAPAGKPKSKG 446

Query: 412 ---NYSSQKSHIPLKESEKISKLQQ 433
              N  + K+  P K   K S   +
Sbjct: 447 GKINPFAGKTVAPKKSGAKKSGFAK 471


>gi|258622745|ref|ZP_05717763.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
 gi|258584933|gb|EEW09664.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
          Length = 460

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 139/402 (34%), Positives = 224/402 (55%), Gaps = 9/402 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L L P+++  +   G+   TPIQ +++P +L   DV G  +TG+GKTA+F L +L+
Sbjct: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+    L+L PTRELA QVA +    G+  +    L +  G+P   Q   LE
Sbjct: 65  NLNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRIIHNIKVLTLCGGMPMGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH ++ ++ ++ +  LV+DEADRML+MGF   ++ I +  P  RQT
Sbjct: 122 HGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++++++  +N   I+V     T +T            S       + L 
Sbjct: 182 LLFSATYPASIEQIAQSVTRNAMMIKVAA---THDTSSIRQYFYKVDGSAARDEALEALL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + ++FCN K+ V N+  +L + GFSV  +HG+++QR R + L  F   +I ++V
Sbjct: 239 LHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFN+D+    E ++HRIGRTGRAG  G AF+  +  +   +  I
Sbjct: 299 ATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQI 358

Query: 361 EKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           ++ ++  ++   L    +   P    +   Q +  +K+   P
Sbjct: 359 DEYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRP 400


>gi|227497408|ref|ZP_03927640.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
 gi|226833084|gb|EEH65467.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
          Length = 557

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 130/376 (34%), Positives = 201/376 (53%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD G+ P++  A+ D G + P PIQ  T+P+ L   DV G A+TGTGKT  F +P+L 
Sbjct: 61  TFADFGVEPEISQALADKGIIHPFPIQALTLPVALDGRDVIGQAKTGTGKTLGFGIPLLM 120

Query: 62  ILEKGRARVRM-------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                             P+ L++ PTRELA QVA    +      + +  + GG  +E 
Sbjct: 121 DTLGPGEEGWDEDPASGSPQALVVLPTRELAKQVATELAQAAAKRTVRIVQVYGGRAYEP 180

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LE+GA+V++ TPGR++D   RG L + ++  +V+DEAD MLD+GF+P ++ I +  
Sbjct: 181 QIEALEKGAEVVVGTPGRLIDLMERGVLSLEHVTTVVLDEADEMLDLGFLPDVEKILART 240

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQT+LFSATM   +  ++  ++  P  I    P   + T+       Y  ++     
Sbjct: 241 RPDRQTMLFSATMPGAVVALARRYMSKPTHIRAQDPGDESMTVTSVKQVVYRTHALNKVE 300

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +         IIF   K+    +   L  +GF+  A+HG++ Q +R + L  F+ G
Sbjct: 301 VVSRILQARGRGRTIIFTRTKRTAARVAEDLGSRGFATAALHGDLGQGAREQALRAFRHG 360

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+  P   + Y+HRIGRTGRAG  G A T V  +D+
Sbjct: 361 KVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGHSGTAVTFVDWDDV 420

Query: 355 KHIDAIEKLIEKKVDW 370
                I K +   V+ 
Sbjct: 421 PRWRLIAKALGLPVEE 436


>gi|195572505|ref|XP_002104236.1| GD20854 [Drosophila simulans]
 gi|194200163|gb|EDX13739.1| GD20854 [Drosophila simulans]
          Length = 784

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 131/386 (33%), Positives = 205/386 (53%), Gaps = 10/386 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L+  +   V  A Y KPTP+Q   IP+++   D+   AQTG+GKTA+F++P+L 
Sbjct: 296 SFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILN 355

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + +   +   P  L+L PTRELA Q+ +  +K+     +  A+L GG     Q ++L+R
Sbjct: 356 QMYELGHQ--YPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDR 413

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D   RGK+ + NI  LV+DEADRMLDMGF P I+ I   +       
Sbjct: 414 GCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQ 473

Query: 182 ----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ- 236
               +FSAT   ++Q+++ +FL N   + V    ST+E I    +  Y    +   L   
Sbjct: 474 RQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLL 533

Query: 237 ---QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
              +           +IF   KK   +L   L +    V +IHG+  Q+ R + L  F+ 
Sbjct: 534 SSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRS 593

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+ +AARGLDIP V HV NFD+P+  E Y+HRIGRTGR G  G A +   +++
Sbjct: 594 GDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKN 653

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379
                 + +L+ +    +   +  ++
Sbjct: 654 RNICSDLLELLIETKQEIPSFMEDMS 679


>gi|71281498|ref|YP_266942.1| ATP-dependent RNA helicase RhlB [Colwellia psychrerythraea 34H]
 gi|71147238|gb|AAZ27711.1| ATP-dependent RNA helicase RhlB [Colwellia psychrerythraea 34H]
          Length = 428

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 204/378 (53%), Gaps = 2/378 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L+P+VV  +   G+   T IQ K++P++LQ  D+ G AQTG GKT +F+     
Sbjct: 10  KFADLNLAPQVVTGLEAMGFDYCTSIQAKSLPVLLQGTDLAGQAQTGEGKTIAFLAATFH 69

Query: 62  IL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L +K       PR LI+ PTRELA Q+  +  +  K+  L + ++ GG  +E+Q  +LE
Sbjct: 70  HLLQKEAPTHNQPRALIMAPTRELAIQIHRDATEMAKSTGLRLGVVYGGEGYESQRLELE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+LI T GR++D+  +G   + NIE++V+DEADRM D+GFI  I+ +   +P   + 
Sbjct: 130 AGVDILIGTCGRLIDYMKQGIYNLKNIEVIVLDEADRMFDLGFIKDIRYMFDKMPPATER 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L    + T   +     F        V       +T        +   ++    L Q L 
Sbjct: 190 LSMLFSATLSFRVKELAFDHMNDPTSVEVEPEQ-KTNSRISEELFYPSNEDKMTLLQTLI 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D  +  I+F N K     +   L      V  + G++ Q+ R+KIL  F +GT+ ++V
Sbjct: 249 EEDWPEKAIVFANTKHVCEKVFDHLNADKIRVGLLTGDVPQKKRLKILEEFTDGTVDILV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL IP V HVFN+D+P+  ++Y+HRIGRTGRAG  G A +L  ++ + ++  I
Sbjct: 309 ATDVAARGLHIPSVTHVFNYDLPDDCQDYVHRIGRTGRAGETGHAISLACEQYVFNLPEI 368

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E  I   +     D  +L
Sbjct: 369 ETYIGHDLPVTKYDHDAL 386


>gi|186476125|ref|YP_001857595.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184192584|gb|ACC70549.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 556

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 138/391 (35%), Positives = 212/391 (54%), Gaps = 25/391 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGLS ++V A+  AGY  PTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 36  TFAELGLSAEIVSALTAAGYKSPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 95

Query: 62  ILEK----------------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNY 99
              +                          V  P  L+L PTRELA QV      YGK+ 
Sbjct: 96  RFAQLQKVQASQPREPRDNNAGGRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 155

Query: 100 NL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
                  ++GG+ +  Q   L +  ++L+ TPGR++DH  RG++ ++ +++LV+DEADRM
Sbjct: 156 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQMLVLDEADRM 215

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
           LDMGFI  I  I +  P +RQT+LFSAT+  ++  ++   L+ P+RIE+         I 
Sbjct: 216 LDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTGRLLKEPERIEIKQHIEQRTNIA 275

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
                   +  K    L   L     +   I+F   K +   L   L   GF   A+HG+
Sbjct: 276 QTVHYVDDRDHKDR--LLDHLLRDSGLDQAIVFTATKSDADMLAGRLADAGFESAALHGD 333

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
           + Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTGR
Sbjct: 334 LPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGR 393

Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           AGR G A +LV   +   +  IE+ +   + 
Sbjct: 394 AGRSGTAVSLVHHAEQGALKRIERFVRAPLP 424


>gi|60594465|pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
          Length = 390

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 95/378 (25%), Positives = 165/378 (43%), Gaps = 4/378 (1%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M  F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  
Sbjct: 6   MSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 65

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  LE    +V +             ++  + F KY  N  + V      I  + +  K 
Sbjct: 66  LQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK 125

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V+      +    N+   L +    ++ +    +  +     +Q I  + P  +Q
Sbjct: 126 NCPHIVVGTPGRILALARNKSLNLKHIKHFILDEADKMLEQLDMRRDVQEIFRMTPHEKQ 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++FSAT++ E++ V   F+Q+P  I V+  +         +        K   L     
Sbjct: 186 VMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL-- 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++
Sbjct: 244 LDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRIL 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHID 358
           VA++L  RG+DI  V   FN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++
Sbjct: 304 VATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILN 363

Query: 359 AIEKLIEKKVDWLNGDLS 376
            ++   E  +  L  ++ 
Sbjct: 364 DVQDRFEVNISELPDEID 381


>gi|332300603|ref|YP_004442524.1| DEAD/DEAH box helicase domain protein [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177666|gb|AEE13356.1| DEAD/DEAH box helicase domain protein [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 553

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 117/374 (31%), Positives = 204/374 (54%), Gaps = 7/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           M F  L LSP+++ A  D G+ +P P+Q + IP +     D+  +++TG+GKTA++ LP+
Sbjct: 1   MTFDTLDLSPELLRATSDLGFSEPMPVQQEVIPYLSSHRGDLIALSKTGSGKTAAYGLPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKK 118
           L  + +   +   P  LIL PTRELA QV  +     K  ++   L + G    E Q ++
Sbjct: 61  LERIIQA--KGSAPCGLILTPTRELAIQVQSDLVALAKYTSVRQILALYGGASIEEQIRQ 118

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G  +++ TPGR+ D   R  + +  + ++V+DEAD MLDMGF   +Q I   VP   
Sbjct: 119 LAKGYHIIVATPGRLCDLLRRKAVKLRKVSVVVLDEADVMLDMGFQRDLQEILQAVPQQV 178

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +  LFSATM+ E++++++N++ +   +++   +   +          A  ++      + 
Sbjct: 179 EHWLFSATMSREVREIADNYISDAHEVQIGALN---KANADIKHLYVAVPARHKYAALKR 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +        GIIFC  +     +   L + G++  A+HG++ Q  R  +++ F+   +QL
Sbjct: 236 VVDYYPNIYGIIFCRTRAETKEIAEWLIRDGYNADALHGDLSQAQRDMVMNRFRIRNLQL 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ DV HV ++ +P   ++Y HR GRT RAG+ G +  +    D K I 
Sbjct: 296 LVATDVAARGLDVDDVTHVLHYGLPADPDSYTHRSGRTARAGKTGLSIAICHLRDSKQIR 355

Query: 359 AIEKLIEKKVDWLN 372
            IE+    +++ + 
Sbjct: 356 IIERHAGIRIEAMP 369


>gi|119605383|gb|EAW84977.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41, isoform CRA_a [Homo
           sapiens]
 gi|119605386|gb|EAW84980.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41, isoform CRA_a [Homo
           sapiens]
 gi|193787208|dbj|BAG52414.1| unnamed protein product [Homo sapiens]
          Length = 496

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 194/389 (49%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 56  SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 115

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 116 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 175

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 176 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 235

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 236 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKE 291

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 292 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 351

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 352 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 411

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 412 KACDESVLMDLKALLLEAKQKVPPVLQVL 440


>gi|328868659|gb|EGG17037.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 834

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 114/389 (29%), Positives = 194/389 (49%), Gaps = 28/389 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            + +  L   ++ A+   GY KP+P+Q++ IP+ L   DV GIA+TG+GKTA+FV+PM  
Sbjct: 410 TWRESSLPADMLEAIAKQGYEKPSPVQMQAIPVALSGRDVLGIAETGSGKTAAFVIPMLV 469

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                      +    P  +++ PTRELA Q+      +          L+GG P E Q 
Sbjct: 470 YISKQPRMTKESEQDGPYAVVMAPTRELALQIEKEARVFANFLGYRTVALVGGQPIEEQI 529

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF------------- 163
            +L +G +++I TPGR+ D   +  L++N    +V+DEAD M+DMGF             
Sbjct: 530 YQLSKGCEIVIATPGRLNDCLEKRYLVLNQCNYVVLDEADMMIDMGFELQVESVLDAMPS 589

Query: 164 --------IPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
                       +         R T+L+SATM  +++++S  +L+ P  + +       +
Sbjct: 590 AFLKSENEEEAEKQERDRHRVYRTTILYSATMPPKVERLSRKYLRRPVHVIIGEAGKAVD 649

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
            I+   +   +   K   +   L          I+F N+KK+   +   +++ G S  ++
Sbjct: 650 RIKQTVIFVKSDNDKHQQMSSLLTSGPPPPI--IVFVNKKKHCEIIMEIVQECGLSSTSL 707

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           H    Q  R   L  FK+    +++A+D+A+RG+ +  V HV N+D+PN  E+Y HRIGR
Sbjct: 708 HSGRSQEQREMALEGFKKRKYGVLIATDVASRGIHVEGVTHVINYDMPNNIEDYTHRIGR 767

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           TGRAG  G A +L+  +D + +  ++ ++
Sbjct: 768 TGRAGMEGLASSLITDKDTEIMYNLKNML 796


>gi|195050593|ref|XP_001992926.1| GH13374 [Drosophila grimshawi]
 gi|193899985|gb|EDV98851.1| GH13374 [Drosophila grimshawi]
          Length = 459

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 106/358 (29%), Positives = 180/358 (50%), Gaps = 7/358 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L  +++  + + G+ +P+PIQ   IP+ L   DV   A+ GTGKT ++ +P+L 
Sbjct: 59  EFEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLE 118

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + L++ PTRELA Q +    +  K+ ++ V +  GG   +    ++ +
Sbjct: 119 QIDPT---KDYIQALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQ 175

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD  ++    M++ +ILV+DEAD++L + F   + ++   +P   Q L
Sbjct: 176 KVQLIIATPGRILDLMDKKVADMSHCKILVLDEADKLLSLDFQGMLDHVILKLPKDPQIL 235

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F++   R           T++           ++       L S
Sbjct: 236 LFSATFPLTVKN----FMEKHLREPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFS 291

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+    IH  + Q  R ++  +F++G  + +V 
Sbjct: 292 KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVC 351

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED   +  
Sbjct: 352 SDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHR 409


>gi|91077478|ref|XP_968425.1| PREDICTED: similar to CG5800 CG5800-PA [Tribolium castaneum]
 gi|270002829|gb|EEZ99276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Tribolium castaneum]
          Length = 770

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 143/455 (31%), Positives = 224/455 (49%), Gaps = 31/455 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-L 60
            F DL LSPK +  + + GY KPT IQ +TI L L   D+ G AQTG+GKT +F++P+  
Sbjct: 52  SFDDLPLSPKTLKGLKECGYTKPTDIQRETIKLGLTGKDILGAAQTGSGKTLAFLIPILE 111

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  K   R+     L++ PTRELA Q+ +   + G+++  +  L+IGG   + +  +++
Sbjct: 112 RLYCKQWTRLDGLGALVITPTRELAYQIFEELRRVGEHHEFSAGLIIGGKDLKFERNRMD 171

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V+      +            N+EILV+DEADR LDMGF   +  I + +P  RQT
Sbjct: 172 QCNIVIGTPGRILQHMDENPLFDCVNMEILVLDEADRCLDMGFEQTMNAIVANLPAKRQT 231

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT T  ++ ++   L+NP  + V+  S  +            +  K    +     
Sbjct: 232 LLFSATQTKSVRDLARLSLKNPAYVSVHEHSEYSTPKGLQQSYVVCEL-KDKVSILWSFI 290

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI--HGNIDQRSRMKILSNFKEGTIQL 298
                +  IIF    K V  +     +    V  +  +G + Q  RM I  NF + T  +
Sbjct: 291 KNHLKQKSIIFLASCKEVKYVYEIFCRLRPGVSLMALYGTLHQLRRMDIYENFCKKTSAV 350

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+AARGLD P+V  V   D P  A  YIHR+GRT R  R G++  L+   ++K +D
Sbjct: 351 LFATDIAARGLDFPEVHWVVQADCPEDAATYIHRVGRTARFFRGGESLLLLLPSELKMLD 410

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR--------K 410
            ++   EKK+            P+EKIDI   N  + NNP+ +K   F  R        +
Sbjct: 411 NLK---EKKI------------PIEKIDI---NPLKLNNPV-RKMEAFLARDPDLKDTAQ 451

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQENDADSLGF 445
           + + S    + L + +K+  +Q    ++ A SLG 
Sbjct: 452 RAFVSYAKSVFLMKDKKVFNVQALDTDSFAHSLGL 486


>gi|119191710|ref|XP_001246461.1| hypothetical protein CIMG_00232 [Coccidioides immitis RS]
 gi|118575177|sp|Q1EB31|DBP4_COCIM RecName: Full=ATP-dependent RNA helicase DBP4
          Length = 806

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 118/454 (25%), Positives = 197/454 (43%), Gaps = 24/454 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L LS   +  +  + +   T IQ + +P  ++  D+ G A+TG+GKT +F++P + 
Sbjct: 49  SFSELPLSDATLQGLSASHFKTLTDIQSRAVPHAIKGRDILGAAKTGSGKTLAFLVPVLE 108

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  K          LIL PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L 
Sbjct: 109 NLYRKQWTEYDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLQEEQERLG 168

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +            +I++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 169 RMNILVCTPGRMLQHMDQTAAFDTAHIQMLVLDEADRIMDMGFQSTVDAIVEHLPKERQT 228

Query: 181 LLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT T ++      +             SS                 K   L   + 
Sbjct: 229 MLFSATQTKKVSDLARLSLRDPEYISVHEAASSATPASLQQHYVVTPLPEKLDTLWSFIR 288

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +  +        +++   V       + G  +  +HG   Q +R+ I S F       +
Sbjct: 289 NTLKSKILVFFSSSKQVRFVYEAFRHMQPGIPLLHLHGRQKQSARIDITSKFSRAKYSCL 348

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            ++D+AARGLD P V  V   D P  A+ YIHR+GRT R  R G+A   +   + + +  
Sbjct: 349 FSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEEGM-- 406

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +++L +KK+            P+E+I+I         N +  ++  F      Y  QK+ 
Sbjct: 407 LKRLEQKKI------------PIERINIKAKKQQSIMNQL--QNMCFKDPALKYLGQKAF 452

Query: 420 IPLKESEKISKLQQDIQ------ENDADSLGFRG 447
               +S  I K +          E  A SLG  G
Sbjct: 453 TSYVKSVHIQKDKDVFNVKSLPLEEFASSLGLPG 486


>gi|323355798|gb|EGA87612.1| Fal1p [Saccharomyces cerevisiae VL3]
          Length = 372

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 107/377 (28%), Positives = 193/377 (51%), Gaps = 8/377 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           + L   ++  +   G+  P+ IQ + I  ++   DV   AQ+GTGKTA+F + +L  ++ 
Sbjct: 1   MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
              R +  + LIL PTRELA+Q+    +  G   N+    + GG   +   KK+++    
Sbjct: 61  ---RKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQ 117

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRM---LDMGFIPYIQNITSLVPFTRQTLL 182
            +      +    + ++L      +++ +         +GF   I +I + +P   Q ++
Sbjct: 118 AVSGTPGRVLDMIKRQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVV 177

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM  ++ +V+  F+ +P +I V     + E I+   V    +  K   L    +   
Sbjct: 178 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCD--IYDS 235

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T+   +IFCN KK V  L   L +  F+V ++HG++ Q  R K++++F+ G  ++++++
Sbjct: 236 LTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLIST 295

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+ ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   + K D+  +  IEK
Sbjct: 296 DVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEK 355

Query: 363 LIEKKVDWLNGDLSSLN 379
               K++ +  + + L+
Sbjct: 356 FYSIKINPMPANFAELS 372


>gi|332994630|gb|AEF04685.1| ATP-dependent RNA helicase RhlB [Alteromonas sp. SN2]
          Length = 435

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 126/381 (33%), Positives = 206/381 (54%), Gaps = 6/381 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL ++ KVV A+  A +   TPIQ  ++P +L+  D+ G AQTGTGKT +F++     
Sbjct: 10  FSDLPINSKVVDALTAANFNNCTPIQALSLPPLLEGLDIAGQAQTGTGKTIAFLVATFHY 69

Query: 63  -----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                     +  + PR +I+ PTRELA Q+ ++ +   ++  L++ L+ GG  +++Q +
Sbjct: 70  LLSKADNDENSNSKGPRAIIMAPTRELAVQIFNDAKLLSEHTGLSLGLIYGGEGYQSQRE 129

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE G D++I T GRILD++ +    +NNI++ V+DEADRM D+GFI  I+ +   +P  
Sbjct: 130 TLEEGVDIIIGTTGRILDYYKQNVFTLNNIQVAVLDEADRMFDLGFIKDIRFLFRRLPPA 189

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + L    + T   +     +        V        T        +        LL  
Sbjct: 190 TERLSMLFSATLSYRVQELAYEHMNNPTHVQVAPEQT-TATRVSQELFYPSDDDKMLLLL 248

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     I+F N K +   +   L   G  V  + G++ Q+ R+ IL +F +G + 
Sbjct: 249 SLFEEEWPDKAIVFANTKYSCERVTDWLTADGHRVGLLSGDVPQKKRLGILEDFTKGKLD 308

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL I  V HVFN+D+P+ AE+Y+HRIGRTGRAG+ G A +   ++   ++
Sbjct: 309 ILVATDVAARGLHIDSVTHVFNYDLPDDAEDYVHRIGRTGRAGQSGIAISFACEKYAMNL 368

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             IEK I+  +   + D S+L
Sbjct: 369 PDIEKYIQHAIPVTDYDASAL 389


>gi|119475471|ref|ZP_01615824.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
 gi|119451674|gb|EAW32907.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
          Length = 459

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 143/370 (38%), Positives = 212/370 (57%), Gaps = 8/370 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA L L P  +  +   GY K TPIQ +++PLVL   D+   A+TG+GKTA+F + +LT
Sbjct: 4   NFASLDLPPGQLANLQQLGYEKMTPIQQQSLPLVLAGSDIIAKAKTGSGKTAAFGIGLLT 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            +     R    +T+++ PTREL+ QVA    +  +       +++  G     Q   LE
Sbjct: 64  KI---NPRDFGTQTMVICPTRELSTQVATEIRRLARYQQNIKVVVLCGGQSIGPQIGSLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRI DH  +  L ++ + ILV+DEADRMLDMGF   I+ I   +P  RQT
Sbjct: 121 HGAHIVVGTPGRIKDHLRKKTLSLSRLGILVLDEADRMLDMGFYSDIETIIHEMPDDRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D+++ +S +F ++P  I V +     +         +    ++     Q L 
Sbjct: 181 LLFSATYPDKIKTLSSSFQRSPVEISVESVRGNEKI----HQQLFICDKRERLAGLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +++ +IFCN  K V  +C  L   G S  AIHG+++QR R ++L  F   +  L+V
Sbjct: 237 MNYPIESAVIFCNTIKLVKEVCDYLVDIGISAKAIHGDLEQRDRDQVLIQFANHSCSLLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+  V NF++P  A+ YIHRIGRTGRAG+ G AF+L    +    DAI
Sbjct: 297 ATDVAARGLDIEDLPAVINFELPREADVYIHRIGRTGRAGKEGLAFSLFTDSEKYRFDAI 356

Query: 361 EKLIEKKVDW 370
             L E K+++
Sbjct: 357 STLQENKLNF 366


>gi|224067501|ref|XP_002193843.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
           [Taeniopygia guttata]
          Length = 617

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 126/389 (32%), Positives = 195/389 (50%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G  +PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 177 SFKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 236

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 237 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDGLPPLRCALCIGGM 296

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + ++ G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 297 SVKEQMETIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 356

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     +      A       V       +
Sbjct: 357 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPITINVGRAGAASLDVVQEVEYVKE 412

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 413 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 472

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F++G   ++ A+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 473 FRDGKKDVLGATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 532

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 533 KACDESVLMDLKALLLEAKQKVPPVLQVL 561


>gi|254432488|ref|ZP_05046191.1| cold-shock deAd box protein a [Cyanobium sp. PCC 7001]
 gi|197626941|gb|EDY39500.1| cold-shock deAd box protein a [Cyanobium sp. PCC 7001]
          Length = 610

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 134/364 (36%), Positives = 210/364 (57%), Gaps = 7/364 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P+++ A+   GY +P+PIQ   IP ++   D+ G AQTGTGKTA+F LP+L  L+  + +
Sbjct: 58  PEILEALAAIGYSEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLAGLDAEQRK 117

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLERGADVLIC 128
              P+ L+L PTRELA QVA++F  Y           + GG  F  Q   L RGA V++ 
Sbjct: 118 ---PQVLVLAPTRELALQVAESFNSYAAQLPQVRTVAVYGGADFRDQIHHLRRGAQVVVG 174

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR++DH  +G L ++ +  LV+DEAD ML MGFI  ++ +   +P  RQ +LFSATM 
Sbjct: 175 TPGRVMDHMRQGTLDLSELRSLVLDEADEMLRMGFIDDVEWVLGQLPEQRQVVLFSATMP 234

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
            E++++S+ +L  P  I + T ++ A  I   F+   A          + +   +T +  
Sbjct: 235 AEIRRISQQYLNGPAEITIRTKAADASRIRQRFLTVPAPLK---LAALERVLESETSEGV 291

Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           IIF   K   + +  SLE  G+ V  ++G++ Q  R + +   K G + ++VA+D+AARG
Sbjct: 292 IIFARTKAITLTVAESLEAHGYDVAVLNGDVPQAQRERTIERLKNGQVDVLVATDVAARG 351

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           LD+  +G V N+D+P   E Y+HRIGRTGRAGR G+A   +   + + +  +E+   K +
Sbjct: 352 LDVERIGLVINYDIPFDGEAYVHRIGRTGRAGRSGEAILFLTPRERRFLGGLERAAGKPI 411

Query: 369 DWLN 372
           + + 
Sbjct: 412 EPME 415


>gi|254491606|ref|ZP_05104785.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxidans
           DMS010]
 gi|224463084|gb|EEF79354.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxydans
           DMS010]
          Length = 415

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 130/418 (31%), Positives = 200/418 (47%), Gaps = 9/418 (2%)

Query: 17  LDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI----LEKGRARVRM 72
             AG+   TPIQ +++PL+L   DV G AQTGTGKT +F+L                 + 
Sbjct: 2   AQAGFEFCTPIQAQSLPLLLSGRDVAGQAQTGTGKTIAFLLATFQRLLEIPAADNWDKKQ 61

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
           PR LIL PTRELA Q+A + E       L +A+  GG  ++ Q   +  G DVLI TPGR
Sbjct: 62  PRALILAPTRELAIQIAKDAELLNVEAGLRIAIAHGGKDYQRQRDNITEGVDVLIGTPGR 121

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           +LD+  +G   +  I+ +V+DEADRM D+GFI  ++     +P   + L    + T   +
Sbjct: 122 LLDYQKQGVFSLKFIDAMVLDEADRMFDLGFIKDVRYFLRRIPKPEKRLGMLFSATLSYK 181

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
                +       +V                 Y    +K  L    L  +   + GIIF 
Sbjct: 182 VSELAYEHMNNPEKVQVAPEKMMGDRIEEWVYYPANDEKVPL-LLALIERLQPERGIIFV 240

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
           N K+    +   LE        + G++ Q+ R ++L +F++G    +VA+D+AARGL IP
Sbjct: 241 NTKQAADVVWGYLEGNEHKAALLSGDVPQKKREQLLKHFQDGEFPFLVATDVAARGLHIP 300

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
            V HVFN+D+P   E+Y+HR GRT RAG  G A +   +E +  +  IE  I+ K+   +
Sbjct: 301 AVTHVFNYDLPQDVEDYVHRTGRTARAGASGVAISFACEEFVFSLPEIEDYIKHKLPVAS 360

Query: 373 GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISK 430
               SL  P  ++   +     +N    +  +   RR +  + ++   P K +    K
Sbjct: 361 TSDESLIEPKPRVRPEKRPVHNRN----RNDSAKSRRPRRNNKRQGKAPEKMNSNADK 414


>gi|94501739|ref|ZP_01308253.1| probable ATP-dependent RNA helicase [Oceanobacter sp. RED65]
 gi|94426139|gb|EAT11133.1| probable ATP-dependent RNA helicase [Oceanobacter sp. RED65]
          Length = 449

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 116/364 (31%), Positives = 182/364 (50%), Gaps = 1/364 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L  +++  +   G+ K T +Q +TIP  L++ D+   A+TG+GKTA+FV+PML  
Sbjct: 2   FQSFSLDQRILKGIEALGFTKATDVQQQTIPEALKQQDLMVCARTGSGKTAAFVVPMLQH 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +A     R LIL PTRELA Q+    +   K   +   ++ GG  F+ Q     + 
Sbjct: 62  LLTHKAPNSGTRALILVPTRELAKQLLKQCQALAKFTGIQSGMITGGQEFKFQAALFRKN 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +++I TPGR++DH  + K LM ++E  ++DEADRMLDMGF   +  I +      +   
Sbjct: 122 PEIIIATPGRLIDHLKQKKDLMEDVEYFILDEADRMLDMGFEEDVLTIANACSGKAKPQT 181

Query: 183 FSATMTDELQKVSENFLQNPKRI-EVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
              + T + + +     Q      E+   S   E          A   K    +   L S
Sbjct: 182 LLFSATLQQRGLKHVIKQIQNDPEEIVVDSFRGEHSNIEQHYMLADDDKHKQRILTWLLS 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  IIF N K+      H L      V  +HG++ Q  R  +++  + G  +++VA
Sbjct: 242 NEEYRQAIIFTNTKEKTEQTYHFLSYHNVEVGYLHGDMTQDERNHVMTQMRNGRFKVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V NFD+    ++Y+HRIGRTGRA   G A +L+   +     AIE
Sbjct: 302 TDVAARGLDIQSIDLVINFDMARSGDDYVHRIGRTGRAEASGSAISLIDHTEWNLKAAIE 361

Query: 362 KLIE 365
           + + 
Sbjct: 362 RYLR 365


>gi|91783626|ref|YP_558832.1| putative ATP-dependent RNA helicase, rhlE [Burkholderia xenovorans
           LB400]
 gi|91687580|gb|ABE30780.1| Putative ATP-dependent RNA helicase, rhlE [Burkholderia xenovorans
           LB400]
          Length = 523

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 152/370 (41%), Positives = 217/370 (58%), Gaps = 5/370 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  V D  Y  PTP+Q+K IP VL   DV   AQTGTGKTA F LP+L
Sbjct: 43  MSFALLGLIDPLLRNVQDLNYQTPTPVQVKAIPAVLGGRDVMAAAQTGTGKTAGFALPLL 102

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L +    V   R    +L PTRELA QV  +F  YGK  +L      GG+    Q  K
Sbjct: 103 QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIDYGKGLDLRFLAAYGGVSINPQMMK 162

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DVL+ TPGR+LD   +  + ++ ++ LV+DEADRMLD+GF   +  + + +P  R
Sbjct: 163 LRKGVDVLVATPGRLLDLNRQNAVQLDQVQTLVLDEADRMLDLGFARELNAVFAALPVRR 222

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT TD+++ ++   L++P  I V+ P++TA  I            K    L   
Sbjct: 223 QTLLFSATFTDDIRAMAAGILRDPVNISVSPPNATASKI---RQWVVTVDKKNKPDLFMH 279

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L + +  ++ ++F   +  V  L   L+  G++V  IHG+  Q +R++ L  FK G +Q+
Sbjct: 280 LVAGNNWRHALVFVKTRNGVDYLAAMLDAAGYAVDTIHGDKPQPARLRALERFKTGEVQM 339

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI D+  V N D+P  A++Y+HRIGRTGRAG  G A +LV  ++   + 
Sbjct: 340 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 399

Query: 359 AIEKLIEKKV 368
           AIE LI + +
Sbjct: 400 AIEALIRQTL 409


>gi|78357523|ref|YP_388972.1| DEAD/DEAH box helicase-like [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219928|gb|ABB39277.1| DEAD/DEAH box helicase-like protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 530

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 140/460 (30%), Positives = 224/460 (48%), Gaps = 8/460 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFV-LPM 59
           + FA   L P ++ AV   G+V PTPIQ K +P  L   D+ G+A TGTGKTA+FV   +
Sbjct: 56  VSFARFSLHPALIEAVSARGFVNPTPIQEKALPPALAGQDILGLAATGTGKTAAFVLPLL 115

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L +G +     R L++ PTREL AQ+ +  +   +   L  A + GG+   AQ  +L
Sbjct: 116 HRLLLQGESARGTLRALVVAPTRELVAQIHEEVKTLARFCRLRSATVYGGVGMHAQTVQL 175

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++  PGR+LDH  RG   ++++++LV+DEAD M DMGF+  ++ I       +Q
Sbjct: 176 RTGVDIVLACPGRLLDHVRRGHADLSHVDMLVLDEADMMFDMGFLSDVREILHCTRVRKQ 235

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM   L++++E  L+ P RIE++T +                 +     + +  
Sbjct: 236 TMLFSATMPAPLRELAEECLRQPVRIELDTCAIAPTVRHSLCPVPKHLKTPLLKYVLRAF 295

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + ++F   +     L   L K G     + GN+ Q  R   L  F+ GT ++M
Sbjct: 296 AR----DSVLVFVRTRHGARRLWQQLVKSGIEATCLQGNLSQGRRRAALEGFRRGTFRVM 351

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  VG+V N+D P   E  +HR GRTGRA   G A T V +ED   +  
Sbjct: 352 VATDIAARGIDVSQVGYVINYDFPPSVEACVHRAGRTGRASNSGVALTFVTQEDEPQVRT 411

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E+++   +   + +    +  L++ + A+    R+     +        +     Q + 
Sbjct: 412 LERVLGGALSRWHAEGFDYSA-LQRTEAARPARLRREPRPQRVQRVRRLLEDAAREQMAA 470

Query: 420 IPLKESEKISK--LQQDIQENDADSLGFRGNMPAFMLPKN 457
                S       + QD Q             PA + PK 
Sbjct: 471 ARKVASHAGHGGDMHQDGQPVKPAFRIVPREAPAPLKPKP 510


>gi|70996226|ref|XP_752868.1| ATP-dependent RNA helicase (Drs1) [Aspergillus fumigatus Af293]
 gi|74672247|sp|Q4WRV2|DRS1_ASPFU RecName: Full=ATP-dependent RNA helicase drs1
 gi|66850503|gb|EAL90830.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus fumigatus
           Af293]
 gi|159131623|gb|EDP56736.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus fumigatus
           A1163]
          Length = 830

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 135/359 (37%), Positives = 196/359 (54%), Gaps = 1/359 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  LS  ++  +    +  PTPIQ KTIP+ L   D+ G A TG+GKTA+FV+P+L 
Sbjct: 311 SFQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILE 370

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q  +   K   + ++T   L+GG     Q   L++
Sbjct: 371 RLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATHTDITFCQLVGGFSLREQENILKK 430

Query: 122 GADVLICTPGRILDHFNRGKLLMNNI-EILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH         +  EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 431 RPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 490

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTD + K+    L  P R+ V++  +T+  +   FV        K       L 
Sbjct: 491 MLFSATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLTQEFVRLRPGREDKRLGYLLYLC 550

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      I+F  QK+    +       G     +HG++ Q  R+K + NF+EG +  ++
Sbjct: 551 NEIYTGRVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVENFREGKVAFLL 610

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + +
Sbjct: 611 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKIVKS 669


>gi|323494679|ref|ZP_08099782.1| DNA and RNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323311112|gb|EGA64273.1| DNA and RNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 398

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 222/401 (55%), Gaps = 7/401 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +   +   GY KPT IQ K IP++L+  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSQPITDVISQLGYSKPTTIQQKAIPVILRGDDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G   R +  R LIL PTRELA QV    + Y KN  LT   + GG+   +Q + L
Sbjct: 61  QKLSQGETQRKKRIRALILAPTRELAVQVEQKVQDYSKNLPLTSLAMYGGVDEASQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR++D + +  +  + +E+LV+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDILVATPGRLIDMYGKRAVHFDEVEVLVLDEADRMLDMGFIEDINKILDRLPTDIQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++++++ +++  + +P  I +    ++ + IE   +                 
Sbjct: 181 HLLFSATLSNKVRDLAKTAVHDPYEISIAANQASKKNIEQWLITVDKDKKSALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +++     +IF   K     L   LEK+G    A H    Q  R ++L++FK G I+ M
Sbjct: 238 INENDWDQALIFIETKHGAAKLASQLEKRGIIAEAFHSGRSQAVRSQLLADFKAGKIKYM 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ + ARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 IATGVGARGIDIEGLSRVINYDLPFPADEYVHRIGRTGRADASGEAISFVSKDNFKNLCM 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH--NHARKNNP 398
           IE  +   ++    +      P+  I I  +   H R+N  
Sbjct: 358 IESRLGHLIERREIEGFEPRKPV-PISILNYVPKHKRQNKE 397


>gi|170733402|ref|YP_001765349.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169816644|gb|ACA91227.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 514

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 145/392 (36%), Positives = 221/392 (56%), Gaps = 26/392 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 37  SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96

Query: 62  IL-----------------EKGRARVRMPRTL------ILEPTRELAAQVADNFEKYGKN 98
                               +G  RVR P+ +      +L PTRELA QV      YGK+
Sbjct: 97  RFAQLQKTQAQQPRAPREPNQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 156

Query: 99  YNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
                   ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 157 LKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 216

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I+ I +  P +RQT+LFSAT+  ++  ++   L++P+RIE+     +   I
Sbjct: 217 MLDMGFIEDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLRDPERIEIQQRLESRANI 276

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                    +  K        L   D +   IIF   K +   L   L   GF   A+HG
Sbjct: 277 AQTVHYVDDRDHKDRL--LDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHG 334

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 335 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 394

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           RAGR G A +LV   +   +  IE+ +   + 
Sbjct: 395 RAGRSGIAVSLVHHAEQGALKRIERFVRSPLP 426


>gi|157127270|ref|XP_001654897.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|157127276|ref|XP_001654900.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108872965|gb|EAT37190.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108872968|gb|EAT37193.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 594

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 121/378 (32%), Positives = 199/378 (52%), Gaps = 4/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F ++ +   V+  +   G+ +PTPIQ +  P+ L   ++ G+A+TG+GKT  ++LP   
Sbjct: 119 EFDEIDMPDYVLNEIEKQGFQRPTPIQAQGWPIALSGLNMVGVAKTGSGKTLGYMLPAIV 178

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +K    VR P  L+L PTRELA Q+      +G +  +    L GG     Q   L
Sbjct: 179 HINHQKPDPSVRGPLVLVLAPTRELAQQIQQVATDFGSSSYIRNTCLFGGSSKGPQASDL 238

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +++I TPGR++D    G   +  +  LV+DEADRMLDMGF P I+ I   V   RQ
Sbjct: 239 RRGVEIVIATPGRLIDFLETGTTTLQRVTYLVLDEADRMLDMGFEPQIRKILEQVRPDRQ 298

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA--LLQQ 237
            L++SAT   E+Q+++ +FL +  +I V +   +A      +V    ++ K      L  
Sbjct: 299 ILMWSATWPKEVQRLARDFLGDYVQINVGSLELSANHNITQYVKVIEEHEKNEQLGKLLD 358

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L ++      +IF   K+    +   L + G     +HG+  Q+ R + L+ F+     
Sbjct: 359 NLSARGPAGKILIFSTTKRKCDQITSYLRRYGQDAVGMHGDKSQQERERALNRFRNSNSC 418

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  +  V N+D P + E+Y+HRIGRTGR+   G+A+T     + K  
Sbjct: 419 ILVATDVAARGLDVDGIKVVINYDYPQQTEDYVHRIGRTGRSNATGEAYTFFTSNERKMA 478

Query: 358 DAIEKLIEKKVDWLNGDL 375
             +  ++E+    +  +L
Sbjct: 479 KELVAILEEAKQDVPPEL 496


>gi|326566475|gb|EGE16625.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis BC1]
          Length = 380

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 204/373 (54%), Gaps = 9/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F DL LS  ++ AV    + + TPIQ + +P  L   D  G AQTGTGKTA+F++ +  
Sbjct: 8   NFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITIIE 67

Query: 60  ----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                         +  PR L+L PTRELA Q+  +  +  +   L    + GG  F+ Q
Sbjct: 68  SLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCRELTRFSQLYNLCITGGSDFDKQ 127

Query: 116 NKK-LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
            ++  +R  D+LI TPGRI+D  N+G+L ++ +E+ V+DEADRMLDMGFIP I+ I   +
Sbjct: 128 LEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIVRHM 187

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P   +      + T   Q V     +   +      +  ++T +      Y    ++   
Sbjct: 188 PSNTERQSLLFSAT-FNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREKTS 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             + + + D++K  IIF N+K  V  L     ++   V  + G++ Q+ R + L  FK+G
Sbjct: 247 ALKQILADDSVKKTIIFANRKDQVKRLYD-YLRRHHKVTMLSGDVAQQKRERYLQRFKDG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+A RG+ + DV HV N+ +P+  ++Y+HRIGRTGRAG  G + + V++ D 
Sbjct: 306 EVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVSENDA 365

Query: 355 KHIDAIEKLIEKK 367
            ++ A+E+ I++K
Sbjct: 366 FNLPALERHIDQK 378


>gi|296113215|ref|YP_003627153.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis RH4]
 gi|295920909|gb|ADG61260.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis RH4]
 gi|326560208|gb|EGE10596.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis 7169]
 gi|326562767|gb|EGE13063.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis 103P14B1]
 gi|326567877|gb|EGE17978.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis 12P80B1]
 gi|326570281|gb|EGE20326.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis BC8]
 gi|326573316|gb|EGE23284.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis 101P30B1]
 gi|326576868|gb|EGE26774.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis O35E]
          Length = 391

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 204/373 (54%), Gaps = 9/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F DL LS  ++ AV    + + TPIQ + +P  L   D  G AQTGTGKTA+F++ +  
Sbjct: 8   NFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITIIE 67

Query: 60  ----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                         +  PR L+L PTRELA Q+  +  +  +   L    + GG  F+ Q
Sbjct: 68  SLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCRELTRFSQLYNLCITGGSDFDKQ 127

Query: 116 NKK-LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
            ++  +R  D+LI TPGRI+D  N+G+L ++ +E+ V+DEADRMLDMGFIP I+ I   +
Sbjct: 128 LEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIVRHM 187

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P   +      + T   Q V     +   +      +  ++T +      Y    ++   
Sbjct: 188 PSNTERQSLLFSAT-FNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREKTS 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             + + + D++K  IIF N+K  V  L     ++   V  + G++ Q+ R + L  FK+G
Sbjct: 247 ALKQILADDSVKKTIIFANRKDQVKRLYD-YLRRHHKVTMLSGDVAQQKRERYLQRFKDG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+A RG+ + DV HV N+ +P+  ++Y+HRIGRTGRAG  G + + V++ D 
Sbjct: 306 EVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVSENDA 365

Query: 355 KHIDAIEKLIEKK 367
            ++ A+E+ I++K
Sbjct: 366 FNLPALERHIDQK 378


>gi|330790576|ref|XP_003283372.1| hypothetical protein DICPUDRAFT_6001 [Dictyostelium purpureum]
 gi|325086637|gb|EGC40023.1| hypothetical protein DICPUDRAFT_6001 [Dictyostelium purpureum]
          Length = 462

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 118/419 (28%), Positives = 201/419 (47%), Gaps = 12/419 (2%)

Query: 2   DFADL-----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFV 56
            F DL      +   ++  + + GY +P+PIQ++TIP++L+  DV  IA TG+GKTA+F 
Sbjct: 47  SFEDLDDSKFKVRKYLIKNIQENGYKEPSPIQMQTIPILLKERDVVAIAPTGSGKTAAFS 106

Query: 57  LPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +P+L+ L + +       ++I+ PTRELA Q+  NF    K     + +L   +  ++ +
Sbjct: 107 IPILSALREPKKEGFR--SVIIAPTRELAQQIYRNFRLLSKGKPFRICVLSKNLHNQSTD 164

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L +  D+LI TP R++       L +NN+E LV DEAD++ D  F+  I ++ +    
Sbjct: 165 ESLIKNYDILITTPLRLVYLIKENVLKLNNVEYLVFDEADKLFDRDFVEQIDDVVTACQN 224

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +  +   +   + L +   N +            + A       +    +   K   ++
Sbjct: 225 QKLKICLFSATMNTLVEELANSIMKNPIKITIGEENAAAVTVDQKLIYVGREEGKLMAVR 284

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           QL+Q        +IF   K+   +L   L   G +V  IH    Q  R  I+  F+ G I
Sbjct: 285 QLIQKGLEP-PILIFTQSKERAHDLFQELVFDGINVDVIHSERTQFQRDTIVKKFRTGKI 343

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++ ++L ARG+D   V +V NFD P    +Y+HRIGRTGRA R G A+TL    D   
Sbjct: 344 WVLICTELMARGMDFKGVNYVINFDFPQTLASYVHRIGRTGRANRPGVAYTLYTDADKPM 403

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPP-LEKIDIAQHNHARKNN---PIPQKSTGFDRRKK 411
           +  I   ++K    +   + SL     EK    +    R+     P+ ++++   + KK
Sbjct: 404 LPTIVHAMKKSGSEVPDWMLSLKSTGKEKHQYRKKGVNRETFSTIPLSERASSKFKSKK 462


>gi|300779372|ref|ZP_07089230.1| DEAD/DEAH box family ATP-dependent RNA helicase [Chryseobacterium
           gleum ATCC 35910]
 gi|300504882|gb|EFK36022.1| DEAD/DEAH box family ATP-dependent RNA helicase [Chryseobacterium
           gleum ATCC 35910]
          Length = 562

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 127/373 (34%), Positives = 210/373 (56%), Gaps = 9/373 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLP 58
           M+ F +  LSP ++ A+ + GY  PT IQ +TIP +L    D+  +AQTGTGKTA+F LP
Sbjct: 1   MNLFTETNLSPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNK 117
           +L +++    ++++   L+L PTREL  Q++ + + Y K   ++    + GG     Q +
Sbjct: 61  ILDMIDDTSRKIQL---LVLCPTRELCLQISKDIKNYSKYMKDIKTTAVYGGSSIVEQMR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+    +++ TPGR++D  NR  L  + I  LV+DEAD ML MGF   ++ I S  P T
Sbjct: 118 SLKDKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSETPET 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QT LFSATM  E++++S+N+L  P RI V + +   + I H +     +  K+      
Sbjct: 178 KQTFLFSATMNKEVERISKNYLTKPHRISVGSINEVKKNITHEYYVVGYRQKKEALKRLI 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      IIFC  +     +   L + G++  A+HG++ Q  R  ++  F+   I 
Sbjct: 238 DANPNQY---SIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNID 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  + HV +F +P+  E ++HR GRTGRAG+ G +  L+  E+ + +
Sbjct: 295 ILVATDVAARGLDVNSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEESRKL 354

Query: 358 DAIEKLIEKKVDW 370
             I+   + ++  
Sbjct: 355 KQIKSATKIEIHE 367


>gi|238897679|ref|YP_002923358.1| ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465436|gb|ACQ67210.1| ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 454

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 133/432 (30%), Positives = 218/432 (50%), Gaps = 4/432 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F +  L P ++ A+ D GY+  T IQ   IP  ++  D+ G A TGTGKT +F++P +  
Sbjct: 6   FCEFDLDPCLLRALEDKGYLSATAIQTTVIPKAMEGRDLLGSAPTGTGKTIAFLIPALQH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++  + +   PR LIL PTRELA QVAD   +  K  +L VA + GG+ +    +    
Sbjct: 66  LIDFPKKKPGPPRILILAPTRELAIQVADQATELAKYTSLKVAKITGGVAYMNHTEIFST 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+L+ T GR+L +          +EIL++DEADRMLDMGF   I+ I++   + +QTL
Sbjct: 126 NQDILVATTGRLLQYIKEENFDCRAVEILILDEADRMLDMGFAQDIEVISAETRWRKQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+     +     +       +    S  E  +       +        L   L  
Sbjct: 186 LFSATLESATIREFSERVLRDPIY-LEAAPSVRERKKILQSYYRSDNLPHKIALLCYLLK 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             +++  IIF   ++ V  L H L+ +G     + G + Q  R + ++    G IQ++VA
Sbjct: 245 TPSVQKSIIFVRTREKVHELVHRLQSEGIHSGYLEGEMVQTKRTEAIARLNSGRIQVLVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI D+ HVFNFD+P   + Y+HRIGRT RAGR G A +L+   D   +  +E
Sbjct: 305 TDVASRGLDIEDISHVFNFDMPYTGDVYLHRIGRTARAGRKGTAISLIEAHDHLLLKKVE 364

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           + ++K +      +  L P  +  +  +     K     ++     +++K     K  I 
Sbjct: 365 RYLKKTIK--PRVVDELRPTTKAPNEKKAGKPSKKVLAKREEQKKAKKEKTKVKVKVKIR 422

Query: 422 LKESEKISKLQQ 433
            ++ + + K ++
Sbjct: 423 HRDKKNLGKRRE 434


>gi|220681312|gb|ACL80032.1| vasa-like protein [Bombyx mori]
          Length = 601

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 128/376 (34%), Positives = 201/376 (53%), Gaps = 14/376 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L   V+  VL AGY KPTPIQ   IP+++   D+ G AQTG+GKTA+F++P++ 
Sbjct: 181 SFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIMMSGRDLMGCAQTGSGKTAAFLVPIIN 240

Query: 62  ILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +L +             P+ +I+ PTR L  Q+ +   K+     L VA+  GG     Q
Sbjct: 241 MLLQDPKDLISENGCAQPQVIIVSPTRVLTLQIFNEARKFSYGSVLKVAVAYGGTAVRHQ 300

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              + RG  +L+ TPGR+ D   R ++   ++  +V+DEADRMLDMGF+P I+ +     
Sbjct: 301 GDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSIEKMMLHPT 360

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTL+FSAT  +++Q ++  FL N   + V      +  +E  F+       + 
Sbjct: 361 MVETTKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRN 420

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                + L  ++  K  ++F   K+N   +   L +Q     +IHG+  QR R + L NF
Sbjct: 421 S---LKQLIEENDGKRILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNF 477

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-A 350
           K G   ++VA+ +AARGLDI +V  V N+D+P   + Y+HRIGRTGR G  GKA +   +
Sbjct: 478 KSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFYDS 537

Query: 351 KEDIKHIDAIEKLIEK 366
            +D+  +  + K++ +
Sbjct: 538 DQDLALVADLSKILRQ 553


>gi|305667304|ref|YP_003863591.1| DEAD box family ATP-dependent RNA helicase [Maribacter sp.
           HTCC2170]
 gi|88709351|gb|EAR01584.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Maribacter sp. HTCC2170]
          Length = 603

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 208/368 (56%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F  LGL   ++ AV D G+  P+ +Q K IP++L+   D+  +AQTGTGKTA+F  P++
Sbjct: 3   KFEALGLQESLLNAVADMGFETPSEVQEKAIPILLEDETDLVALAQTGTGKTAAFGFPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             ++      R  + LIL PTREL  Q+ +  + Y K       + I G      Q +++
Sbjct: 63  QKIDS---ESRTTQGLILSPTRELCLQITNELKLYSKYEKSINVVAIYGGASITEQARQI 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA +++ TPGR+ D  +RG + +  I+  ++DEAD ML+MGF   I++I S  P  + 
Sbjct: 120 KRGAQIVVATPGRMKDMISRGLVNITKIDYCILDEADEMLNMGFFEDIKDILSNTPDEKS 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM  E+  +++ F+ +PK I   T               Y    +      + L
Sbjct: 180 TWLFSATMPREVSVIAKKFMHSPKEI---TVGDKNSGATTVQHEYYVVGGRDRYPALKRL 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     ++FC  K++   +   L + G++  A+HG++ Q  R  ++++F++  IQ++
Sbjct: 237 ADTNPDIFSVVFCRTKRDTQRVAEKLIEDGYNAGALHGDLSQNQRDLVMNSFRKKQIQML 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ D+ HV N+ +P+  E Y HR GRTGRAG+ G +  +V + +++ I A
Sbjct: 297 VATDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIVTRSEMRKIKA 356

Query: 360 IEKLIEKK 367
           IE  I++K
Sbjct: 357 IENKIKQK 364


>gi|332641920|gb|AEE75441.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 407

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 195/377 (51%), Gaps = 10/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++      G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F      
Sbjct: 40  SFDAMGLQENLLR-----GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC---SG 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L++    +   + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 92  VLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 151

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 152 GVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 211

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 212 VFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDL--YE 269

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 270 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 329

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V ++D + +  I+
Sbjct: 330 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 389

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     V+ L  +++ L
Sbjct: 390 KFYNVVVEELPSNVADL 406


>gi|327352045|gb|EGE80902.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis ATCC 18188]
          Length = 834

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 149/453 (32%), Positives = 221/453 (48%), Gaps = 17/453 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L 
Sbjct: 312 SFQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILE 371

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++
Sbjct: 372 RLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKK 431

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 432 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 491

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+ + K+    L  P R+ V+    T  T+   FV        K      +L 
Sbjct: 492 MLFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLVQEFVRLRPGREDKRLGYLMVLC 551

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   KK    +       G     +HG++ Q  R+K + +F++G +  ++
Sbjct: 552 KTIYKDRVIIFFRAKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVESFRDGKVSFLL 611

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A TL A+ D K + A 
Sbjct: 612 ATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKAA 671

Query: 361 EK---LIEKKVDWLNGDLSSLNPPLEKIDIAQHNH-------------ARKNNPIPQKST 404
            K       K+     D +  +    K++  Q                A+    + + S 
Sbjct: 672 VKTGRAQGAKIVSRPIDSAEADKWAAKVEEMQEEVKEILKEEKEEKQLAQAEMEVTRGSN 731

Query: 405 GFDRRKKNYSSQKSHIPLKESEKISKLQQDIQE 437
             +  K+  S  K      E EK+   Q+ ++E
Sbjct: 732 LINHEKEIMSRPKRTWFETEKEKLQAKQRSLEE 764


>gi|239612877|gb|EEQ89864.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis ER-3]
          Length = 834

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 149/453 (32%), Positives = 221/453 (48%), Gaps = 17/453 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L 
Sbjct: 312 SFQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILE 371

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++
Sbjct: 372 RLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKK 431

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 432 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 491

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+ + K+    L  P R+ V+    T  T+   FV        K      +L 
Sbjct: 492 MLFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLVQEFVRLRPGREDKRLGYLMVLC 551

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   KK    +       G     +HG++ Q  R+K + +F++G +  ++
Sbjct: 552 KTIYKDRVIIFFRAKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVESFRDGKVSFLL 611

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A TL A+ D K + A 
Sbjct: 612 ATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKAA 671

Query: 361 EK---LIEKKVDWLNGDLSSLNPPLEKIDIAQHNH-------------ARKNNPIPQKST 404
            K       K+     D +  +    K++  Q                A+    + + S 
Sbjct: 672 VKTGRAQGAKIVSRPIDSAEADKWAAKVEEMQEEVKEILKEEKEEKQLAQAEMEVTRGSN 731

Query: 405 GFDRRKKNYSSQKSHIPLKESEKISKLQQDIQE 437
             +  K+  S  K      E EK+   Q+ ++E
Sbjct: 732 LINHEKEIMSRPKRTWFETEKEKLQAKQRSLEE 764


>gi|198453003|ref|XP_002137583.1| GA27302 [Drosophila pseudoobscura pseudoobscura]
 gi|198132172|gb|EDY68141.1| GA27302 [Drosophila pseudoobscura pseudoobscura]
          Length = 800

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 141/429 (32%), Positives = 215/429 (50%), Gaps = 25/429 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L+  +   V  A Y KPTP+Q   IP+++   D+   AQTG+GKTA+F++P+L 
Sbjct: 292 TFDDVQLTEIIRNNVSLARYDKPTPVQKHAIPIIISGRDLMACAQTGSGKTAAFLVPILN 351

Query: 62  ILEKGRA------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            + +               R + P  L+L PTRELA Q+ +  +K+     +  A+L GG
Sbjct: 352 QMYEHGMSAPPQNNRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGG 411

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q ++L+RG  +++ TPGR+ D   RGK+ + NI  LV+DEADRMLDMGF P I+ 
Sbjct: 412 NNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRR 471

Query: 170 ITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I   +           +FSAT   ++Q+++ +FL N   + V    ST+E I    +  Y
Sbjct: 472 IVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVY 531

Query: 226 AQYSKKCALLQQLLQSQDTMKN----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
            Q  +   L            +     +IF   KK   +L   L +    V +IHG+  Q
Sbjct: 532 EQDKRSYLLDLLSSIRDGPEYSKDSLTLIFVETKKGADSLEEFLYQCSHPVTSIHGDRTQ 591

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           + R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P+  E Y+HRIGRTGR G 
Sbjct: 592 KEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGN 651

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            G A +   +++      + +L+ +    +   L  L       D       R+  P  +
Sbjct: 652 LGVATSFFNEKNRNICSDLLELLIETKQEIPNFLEDLLSS----DRGHGGAKRRGGPGAR 707

Query: 402 -KSTGFDRR 409
              +GF  R
Sbjct: 708 YGGSGFGSR 716


>gi|254247856|ref|ZP_04941177.1| hypothetical protein BCPG_02669 [Burkholderia cenocepacia PC184]
 gi|124872632|gb|EAY64348.1| hypothetical protein BCPG_02669 [Burkholderia cenocepacia PC184]
          Length = 545

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 145/392 (36%), Positives = 221/392 (56%), Gaps = 26/392 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 68  SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 127

Query: 62  IL-----------------EKGRARVRMPRTL------ILEPTRELAAQVADNFEKYGKN 98
                               +G  RVR P+ +      +L PTRELA QV      YGK+
Sbjct: 128 RFAQLQKTQAQQPRAPREPNQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 187

Query: 99  YNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
                   ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 188 LKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 247

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I+ I +  P +RQT+LFSAT+  ++  ++   L++P+RIE+     +   I
Sbjct: 248 MLDMGFIEDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANI 307

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                    +  K        L   D +   IIF   K +   L   L   GF   A+HG
Sbjct: 308 AQTVHYVDDRDHKDRL--LDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHG 365

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 366 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 425

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           RAGR G A +LV   +   +  IE+ +   + 
Sbjct: 426 RAGRSGIAVSLVHHAEQGALKRIERFVRSPLP 457


>gi|107028773|ref|YP_625868.1| DEAD/DEAH box helicase-like [Burkholderia cenocepacia AU 1054]
 gi|116690068|ref|YP_835691.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|105897937|gb|ABF80895.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
           1054]
 gi|116648157|gb|ABK08798.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           HI2424]
          Length = 516

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 145/392 (36%), Positives = 221/392 (56%), Gaps = 26/392 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 37  SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96

Query: 62  IL-----------------EKGRARVRMPRTL------ILEPTRELAAQVADNFEKYGKN 98
                               +G  RVR P+ +      +L PTRELA QV      YGK+
Sbjct: 97  RFAQLQKTQAQQPRAPREPNQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 156

Query: 99  YNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
                   ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 157 LKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 216

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I+ I +  P +RQT+LFSAT+  ++  ++   L++P+RIE+     +   I
Sbjct: 217 MLDMGFIEDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANI 276

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                    +  K        L   D +   IIF   K +   L   L   GF   A+HG
Sbjct: 277 AQTVHYVDDRDHKDRL--LDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHG 334

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 335 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 394

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           RAGR G A +LV   +   +  IE+ +   + 
Sbjct: 395 RAGRSGIAVSLVHHAEQGALKRIERFVRSPLP 426


>gi|330925821|ref|XP_003301209.1| hypothetical protein PTT_12655 [Pyrenophora teres f. teres 0-1]
 gi|311324270|gb|EFQ90696.1| hypothetical protein PTT_12655 [Pyrenophora teres f. teres 0-1]
          Length = 690

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 129/427 (30%), Positives = 205/427 (48%), Gaps = 30/427 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + GL  +++  V   GY +PTPIQ   IP+ LQ  D+ G+A+TG+GKTA+F+LP+L 
Sbjct: 270 NWQEAGLPDQLMRIVDQVGYTEPTPIQRAAIPIALQCRDLIGVAKTGSGKTAAFLLPLLA 329

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + +        R   P  LIL PTRELA Q+ +   K+        A+L+GG   E Q+
Sbjct: 330 YISQLPPLDAINRHDGPYALILAPTRELAQQIEEEARKFATPLGFRTAVLVGGHSIEEQS 389

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            ++  GA+++I TPGR+ D   R  L+++    +++DEADRM+DMGF   +  I + +P 
Sbjct: 390 FQMRDGAEIIIATPGRLNDCIERRVLVLSQCTYVIMDEADRMIDMGFEEPVNKILAALPV 449

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE------------------ 218
           + +          +  K             +                             
Sbjct: 450 SNEKPDTEEAEDPDAMKRGLYRQTMMYTATMPPALERIAKQYSRRPAIVTIGNLGEATDT 509

Query: 219 -HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
               V       K+   LQ++L S +     I+F N K+N   +   ++  GFS   +HG
Sbjct: 510 VEQRVEFIQGEEKRKKRLQEILTSGEFAPPIIVFVNIKRNCDAIARDIKHMGFSSATMHG 569

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           +  Q  R   L+  K G   ++VA+DLA RG+DIPDV  V NF++P+  E Y HRIGRTG
Sbjct: 570 SKTQEQREAALAALKSGQTNVLVATDLAGRGIDIPDVSLVVNFNMPSSIEAYTHRIGRTG 629

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           R  + G A T    ED   +  +++++ K       +LS +   L K + AQ    ++  
Sbjct: 630 RQDKKGTAITFWGNEDADVLYDLKQILTK------SNLSKVPEDLRKHEAAQQKGKKRGE 683

Query: 398 PIPQKST 404
            + +  T
Sbjct: 684 VMGKNIT 690


>gi|157376496|ref|YP_001475096.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157318870|gb|ABV37968.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 419

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 165/422 (39%), Positives = 230/422 (54%), Gaps = 17/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ + LS K++  + + GY  PTPIQ   IP++L   D+   AQTGTGKTA+F LP+L
Sbjct: 1   MSFSSMALSQKLITLLSELGYSSPTPIQAHAIPVILAGQDIMAGAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLIL---------EPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
             L +    +   +  +           PTRELA QV  +F KYGK+  L  A++ GG+ 
Sbjct: 61  QKLSECDVELSDTKQTVSLKPVRALVLTPTRELALQVNQSFAKYGKDSGLNTAIVYGGVS 120

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            +AQ   L+ G D+L+ TPGR+LDH  RG L +  +  LV DEADRMLDMGF   I  I 
Sbjct: 121 IDAQADALKAGVDILVATPGRLLDHLRRGSLTLKQLNFLVFDEADRMLDMGFKDEINAIL 180

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
             VP  RQTLLFSAT    +  +S+   Q+PK IEV+  ++ A  +E    A  A    +
Sbjct: 181 KQVPSKRQTLLFSATFDPSVFALSKRLQQDPKLIEVDKRNTLAAKVEQVVYAVDADRKSE 240

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                         +  +IF  +K+   N+   + K G    A HG++ Q  R K L  F
Sbjct: 241 LICHL---VKSKLWQQVLIFSRKKQGADNIAAKMVKAGIKAQAFHGDLSQAVREKALQQF 297

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K+G IQ++VA+D+AARGLD+ ++  V N+++P  AE+YIHRIGRTGRAG  G A TL ++
Sbjct: 298 KQGEIQVLVATDVAARGLDVEELKVVVNYELPFIAEDYIHRIGRTGRAGNAGLAITLYSE 357

Query: 352 EDIKHIDAIEKLIEKKV--DWLNG---DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
           ED   ++ IE L++ ++   WL G   DL+   P   K   A      K      K  G 
Sbjct: 358 EDALLLEEIEALLDSRLPQQWLPGFEPDLTKAEPVTRKNSKAAQKQRAKRRASGGKKPGS 417

Query: 407 DR 408
            R
Sbjct: 418 RR 419


>gi|225677315|ref|ZP_03788292.1| ATP-dependent RNA helicase, DeaD/DeaH box [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590642|gb|EEH11892.1| ATP-dependent RNA helicase, DeaD/DeaH box [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 402

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 153/416 (36%), Positives = 221/416 (53%), Gaps = 20/416 (4%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +GL   +  A+       PTPIQI+ IPL LQ  D+ G AQTGTGKT +F +P++  L  
Sbjct: 1   MGLPASLRQALDKNNLFVPTPIQIQAIPLALQGKDILGSAQTGTGKTLAFAIPLVAKL-- 58

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLERGAD 124
                     L++ PTRELA QV +   K   +N  L VALLIGG P   Q  +L++   
Sbjct: 59  -LNEPNTGSALVIVPTRELAHQVTNEIRKLLSQNSALRVALLIGGEPIFRQLNQLQKKPQ 117

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           ++I TPGRI+DH  R  L+  N+ +LV+DE DRM DMGF   I+ I   +P  RQTL+FS
Sbjct: 118 IVIGTPGRIIDHIERKTLINRNVSVLVLDETDRMFDMGFGVQIEEIMKHLPKIRQTLMFS 177

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT+  ++ K++E +L  P+RI V+       T            S+     + + Q    
Sbjct: 178 ATLPGDIVKLAEKYLNRPERISVD----CEATTSVKIKQEIVYASESEKYEKLVTQLCQR 233

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             + IIF   K+    L + L K  +S  AIHG++ Q  R +++++F+ G  Q+MVA+D+
Sbjct: 234 EGSIIIFVKTKRGADQLANRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDV 293

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           A+RGLDIP + HV N+D P    +YIHRIGRT RAG  G A + V  +D + + A+    
Sbjct: 294 ASRGLDIPHIQHVINYDAPQSQADYIHRIGRTARAGAEGYALSFVTPQDKRRLPALAD-- 351

Query: 365 EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
             K   LN D S        +   + N  +         T + R+K N   +KS +
Sbjct: 352 --KEGELNFDCS--------VQFKKRNSKKVFKRPSTLKTKYGRKKINAFKKKSRV 397


>gi|254482880|ref|ZP_05096117.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214036961|gb|EEB77631.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 465

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 126/372 (33%), Positives = 194/372 (52%), Gaps = 6/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F DLGL  +++  V D G+   +PIQ + +P  LQ HD  G AQTGTGKTA+F++ +   
Sbjct: 85  FHDLGLRDELMHGVADLGFQYSSPIQAQVLPHTLQGHDAIGKAQTGTGKTAAFLITIFND 144

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 +G   V  PR L++ PTREL  Q+A +    GK+  L VA LIGG+ ++ Q  +
Sbjct: 145 QLCHPIEGERFVGEPRALVIAPTRELVMQIAADAADLGKHTGLQVATLIGGMDYQKQLNR 204

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 D+++ TPGR+LD   R  L ++++E+LV+DEADRMLDMGFIP ++ I    P  
Sbjct: 205 LQRDVIDLVVATPGRLLDFMGRRDLFLDHVEVLVLDEADRMLDMGFIPQVKRIVRACPRK 264

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
                   + T   Q +     Q             +   +      Y   S++   +  
Sbjct: 265 ESRQTLLFSAT-FTQDIINLSQQWTYEPVTVEIEPDSVATDTVDQKIYMVSSEQRFRVLN 323

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   D   + I+F N++  V  L   L K G     + G I Q  R + L  FK G I 
Sbjct: 324 NLVRSDDCSSVIVFANRRDQVRRLHERLRKAGVKCGVLSGEIPQAKRTRTLEQFKNGEIT 383

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A RG+ +  + HV N+++P   E+Y+HRIGRTGRAG  G + +  +++D   +
Sbjct: 384 VLVATDVAGRGIHVDGISHVVNYNLPEDPEDYVHRIGRTGRAGATGTSISFASEDDAFLL 443

Query: 358 DAIEKLIEKKVD 369
             +E L+   ++
Sbjct: 444 PDLEALLGAPLE 455


>gi|294885688|ref|XP_002771413.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239874994|gb|EER03229.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 431

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 100/376 (26%), Positives = 168/376 (44%), Gaps = 17/376 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF D  L  +++  + + G+ KP+PIQ ++IP  L   ++   A+ GTGKTASF++PML 
Sbjct: 69  DFEDYFLKRELLMGIFEKGFEKPSPIQEESIPPALAGKNILARAKNGTGKTASFLIPMLE 128

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +            L+L PTRELA Q +   ++ GK  +  V +  GG        +L  
Sbjct: 129 KVNTDITDGIQG--LVLVPTRELALQTSAVAKELGKYMDAQVMVTTGGTSLRDDIMRLYN 186

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +L+ TPGR+LD  N+G   +++   + + +    L       +           +  
Sbjct: 187 TVHILVGTPGRVLDLTNKGVCSLSDTCTMCVMDEADKLLSPEFQPVVEELVRFLPKEKRQ 246

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +   + T  +                          + C+        ++       L S
Sbjct: 247 ILMFSATFPVTI---------------LDFKNKTHSKGCYPVLCFVEERQKVHCLNTLFS 291

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T+   IIFCN    V  L   + + GFS   IH  + Q  R ++  +F+ G  + +V+
Sbjct: 292 KLTINQAIIFCNSVNRVELLAKKITELGFSCFYIHARMYQSHRNRVFHDFRNGACRCLVS 351

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDL  RG+DI +V  V NFD P  +E Y+HRIGR+GR G  G A  ++  +D  ++  IE
Sbjct: 352 SDLFTRGIDIENVNVVINFDFPKNSETYLHRIGRSGRFGHLGIAINMLTYDDRFNLYRIE 411

Query: 362 KLIEKKVDWLNGDLSS 377
             +  ++  +   +  
Sbjct: 412 HELGTEIKPIPSHIDE 427


>gi|293331927|ref|NP_001170610.1| hypothetical protein LOC100384654 [Zea mays]
 gi|238006354|gb|ACR34212.1| unknown [Zea mays]
          Length = 427

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 159/375 (42%), Gaps = 2/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 49  FRDFLLKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 108

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    +V                   + F KY     + V      I       K E  
Sbjct: 109 IDPVAGQVAALVLCHTRELAYQICHEFERFSKYLPELRVAVFYGGVHIKNHKDLLKNECP 168

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L N    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 169 HIVVGTPGRILALARDKDLPLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 228

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  I V+  +              ++  K        L   
Sbjct: 229 FSATLSKEIRPVCKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNR--KLNDLLDA 286

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L +  F    IH  + Q  R+    NFKEG  +++VA+
Sbjct: 287 LDFNQVVIFVKSVSRAAELNKLLCECNFPSICIHSGMTQEERLTRYKNFKEGHKRILVAT 346

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL  RG+DI  V  V N+D+P+ A+ Y+HR+GR GR G  G A T V+  D   ++ +++
Sbjct: 347 DLVGRGIDIERVNIVVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSSDSDVLNQVQE 406

Query: 363 LIEKKVDWLNGDLSS 377
             E  +  L   + +
Sbjct: 407 RFEVDIKELPEQIDT 421


>gi|302878957|ref|YP_003847521.1| DEAD/DEAH box helicase domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302581746|gb|ADL55757.1| DEAD/DEAH box helicase domain protein [Gallionella
           capsiferriformans ES-2]
          Length = 546

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 148/369 (40%), Positives = 224/369 (60%), Gaps = 3/369 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F +L L+P ++ A+ + GY +PTPIQ + IP ++  HD+   AQTG+GKTA+F+LP +
Sbjct: 1   MTFEELNLNPSILKAIAETGYTEPTPIQEQAIPEIIAGHDLMASAQTGSGKTAAFILPAL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +        + PR L+L PTRELA QV D   KYGKN    +  ++GG+P+  QN+ L
Sbjct: 61  NRLATPSAMPGKGPRVLVLTPTRELAQQVCDAATKYGKNMRFKIISILGGMPYPVQNRLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+L+ TPGR++DH  RG++  + +E+L++DEADRMLDMGF+  ++ I +  P TRQ
Sbjct: 121 SSHVDILVATPGRLIDHLERGRIDFSRLEMLILDEADRMLDMGFVDDVERIAAATPATRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT+   +  ++   L+ PKRI V+      E IE   +       K    +   L
Sbjct: 181 TLLFSATLEGVVGNLASRLLKTPKRINVSAAKDKHENIEQRMMFADDVAHK--NKMLSHL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +   +   ++F   K++   L   L  QG SV A+HG++ QR R + L N + G ++++
Sbjct: 239 LTDTEVNQALVFTATKRDADGLADQLSAQGHSVAALHGDMSQRERNRTLLNMRNGNVRIL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  + HV NFD+P  AE+Y+HRIGRTGR G  G A +  +  D + +  
Sbjct: 299 VATDVAARGLDVRGISHVINFDLPKFAEDYVHRIGRTGRGGSSGIAISFASNRDAQLLKR 358

Query: 360 IEKLIEKKV 368
           IE+  E+ +
Sbjct: 359 IERYTEQSI 367


>gi|221480806|gb|EEE19233.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
          Length = 657

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 129/390 (33%), Positives = 198/390 (50%), Gaps = 16/390 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     ++  + + G   PT IQ++ IP +LQ  D+ GIA TG+GKT  F LPM+ 
Sbjct: 209 NFKDMRFPQPILKGLQERGISYPTQIQMQGIPAILQGRDIIGIAFTGSGKTLVFSLPMIM 268

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R        P  L++ P+RELA+Q  D    + K              +IGG 
Sbjct: 269 GALESEIRSPYLPGEGPFGLVVCPSRELASQTNDVCSFFCKKLEDGGYPALRCVCIIGGC 328

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q K++ +G   ++ TPGR+ D  N+ +L +   E L  DEADRM+DMGF   ++N+
Sbjct: 329 SAVEQAKEVRQGVHCIVATPGRLTDMLNKRRLALQQCEYLCFDEADRMVDMGFEEEVRNV 388

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q+    F ++     +      A       V       +
Sbjct: 389 LDSFGHQRQTLLFSATMPRKIQE----FAKSALIDPLVVNVGRAGAANLDVVQEVEYVKQ 444

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L   L   Q T    +IFC  KK+V ++   L  +G    A+HG + Q  R + +  
Sbjct: 445 ENKLPYLLHCLQKTAPPVLIFCENKKDVDDIQEYLLLKGVDAAAVHGGLAQEERSEAVRA 504

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++V +D+A++GLD P + HV NFD+P   ENY+HRIGRTGR GR G A T V 
Sbjct: 505 FREGRKDVLVGTDVASKGLDFPAIQHVINFDMPKEIENYVHRIGRTGRCGRTGVATTFVN 564

Query: 351 K-EDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           K ++   +  ++ L+ +    +   L +L+
Sbjct: 565 KNQEETVLLDLKALLIEAGQRMPPFLEALD 594


>gi|237845101|ref|XP_002371848.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|211969512|gb|EEB04708.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|221501473|gb|EEE27248.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
          Length = 657

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 129/390 (33%), Positives = 198/390 (50%), Gaps = 16/390 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     ++  + + G   PT IQ++ IP +LQ  D+ GIA TG+GKT  F LPM+ 
Sbjct: 209 NFKDMRFPQPILKGLQERGISYPTQIQMQGIPAILQGRDIIGIAFTGSGKTLVFSLPMIM 268

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R        P  L++ P+RELA+Q  D    + K              +IGG 
Sbjct: 269 GALESEIRSPYLPGEGPFGLVVCPSRELASQTNDVCSFFCKKLEDGGYPALRCVCIIGGC 328

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q K++ +G   ++ TPGR+ D  N+ +L +   E L  DEADRM+DMGF   ++N+
Sbjct: 329 SAVEQAKEVRQGVHCIVATPGRLTDMLNKRRLALQQCEYLCFDEADRMVDMGFEEEVRNV 388

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q+    F ++     +      A       V       +
Sbjct: 389 LDSFGHQRQTLLFSATMPRKIQE----FAKSALIDPLVVNVGRAGAANLDVVQEVEYVKQ 444

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L   L   Q T    +IFC  KK+V ++   L  +G    A+HG + Q  R + +  
Sbjct: 445 ENKLPYLLHCLQKTAPPVLIFCENKKDVDDIQEYLLLKGVDAAAVHGGLAQEERSEAVRA 504

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++V +D+A++GLD P + HV NFD+P   ENY+HRIGRTGR GR G A T V 
Sbjct: 505 FREGRKDVLVGTDVASKGLDFPAIQHVINFDMPKEIENYVHRIGRTGRCGRTGVATTFVN 564

Query: 351 K-EDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           K ++   +  ++ L+ +    +   L +L+
Sbjct: 565 KNQEETVLLDLKALLIEAGQRMPPFLEALD 594


>gi|71896415|ref|NP_001026109.1| probable ATP-dependent RNA helicase DDX49 [Gallus gallus]
 gi|53130312|emb|CAG31485.1| hypothetical protein RCJMB04_6o15 [Gallus gallus]
          Length = 402

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 145/403 (35%), Positives = 209/403 (51%), Gaps = 15/403 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL+P +V      G  +PTP+Q   IP +LQ  D  G A+TG+GKTA+FVLP+L +
Sbjct: 4   FRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQV 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L            L+L PTRELA Q+A+ F   GK   L   +++GG+   AQ  +L R 
Sbjct: 64  L---SEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRK 120

Query: 123 ADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI---QNITSLVPFTR 178
             V+I TPGR      +     +  ++ LV+DEADR+L+ G   +I   + I   VP  R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFIADLEVILEAVPARR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIE-VNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTLLFSAT+TD L ++    +  P   E  +   +  E  +   +   A        L Q
Sbjct: 181 QTLLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAVKDAYLVHLIQ 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             Q +    + IIF    K    L   L K  F   A+H  + QR R   L+ FK    +
Sbjct: 241 TFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSIFK 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARGLDIP V  V N + P   + YIHR+GRT RAGR+G + T+V + DI  +
Sbjct: 301 ILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIHLV 360

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH-NHARKNNPI 399
            AIE+ I+ K+   + +   +      +DI  H N  R+   I
Sbjct: 361 HAIEEEIKLKLQEFSVEEKLV------LDILTHVNVTRRECEI 397


>gi|206560480|ref|YP_002231244.1| putative ATP-dependent RNA helicase [Burkholderia cenocepacia
           J2315]
 gi|198036521|emb|CAR52418.1| putative ATP-dependent RNA helicase [Burkholderia cenocepacia
           J2315]
          Length = 514

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 145/392 (36%), Positives = 218/392 (55%), Gaps = 26/392 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGYVKPTP+Q + IP+ +   D+   + TG+GKTA+F+LP + 
Sbjct: 37  SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPVGIAGRDLLVSSPTGSGKTAAFMLPAIE 96

Query: 62  ILEK-----------------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
              +                           V  P  L+L PTRELA QV      YGK+
Sbjct: 97  TFAQLQKTQAQQPRAPREPNQGDRRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 156

Query: 99  YNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
                   ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 157 LKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 216

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I+ I    P TRQT+LFSAT+  ++  ++   L++P+RIE+     +   I
Sbjct: 217 MLDMGFIEDIETIVDATPDTRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANI 276

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                    +  K    L   L   D +   IIF   K +   L   L   GF   A+HG
Sbjct: 277 AQTVHYVDDRDHKDR--LLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHG 334

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 335 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 394

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           RAGR G A +LV   +   +  IE+ +   + 
Sbjct: 395 RAGRSGIAVSLVHHAEQGALKRIERFVRSPLP 426


>gi|326575788|gb|EGE25711.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis CO72]
          Length = 391

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 123/373 (32%), Positives = 204/373 (54%), Gaps = 9/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F DL LS  ++ AV    + + TPIQ + +P  L   D  G AQTGTGKTA+F++ +  
Sbjct: 8   NFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITIIE 67

Query: 60  ----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                         +  PR L+L PTRELA Q+  +  +  +   L    + GG  F+ Q
Sbjct: 68  SLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCRELTRFSQLYNLCITGGSDFDKQ 127

Query: 116 NKK-LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
            ++  +R  D+LI TPGRI+D  ++G+L ++ +E+ V+DEADRMLDMGFIP I+ I   +
Sbjct: 128 LEQLHKRPLDILIGTPGRIIDWVDKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIVRHM 187

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P   +      + T   Q V     +   +      +  ++T +      Y    ++   
Sbjct: 188 PSNTERQSLLFSAT-FNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREKTS 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             + + + D++K  IIF N+K  V  L     ++   V  + G++ Q+ R + L  FK+G
Sbjct: 247 ALKQILADDSVKKTIIFANRKDQVKRLYD-YLRRHHKVTMLSGDVAQQKRERYLQRFKDG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+A RG+ + DV HV N+ +P+  ++Y+HRIGRTGRAG  G + + V++ D 
Sbjct: 306 EVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVSENDA 365

Query: 355 KHIDAIEKLIEKK 367
            ++ A+E+ I++K
Sbjct: 366 FNLPALERHIDQK 378


>gi|195395963|ref|XP_002056603.1| GJ11034 [Drosophila virilis]
 gi|194143312|gb|EDW59715.1| GJ11034 [Drosophila virilis]
          Length = 817

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 135/397 (34%), Positives = 205/397 (51%), Gaps = 20/397 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L+  +   V  A Y KPTP+Q   IP+++   D+   AQTG+GKTA+F++P+L 
Sbjct: 305 SFDDVQLTEIIRNNVNLARYDKPTPVQKYAIPIIISGRDLMACAQTGSGKTAAFLVPILN 364

Query: 62  ILEKG------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            + +               R + P  L+L PTRELA Q+ +  +K+     +  A+L GG
Sbjct: 365 QMYEHGLSAPPQSNRQYSRRKQFPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGG 424

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q ++L+RG  +++ TPGR+ D   RGK+ + NI  LV+DEADRMLDMGF P I+ 
Sbjct: 425 NNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRR 484

Query: 170 ITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I   +           +FSAT   ++Q+++ +FL N   + V    ST+E I    +  Y
Sbjct: 485 IVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVY 544

Query: 226 AQYSKKCALLQ----QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
            Q  +   L      +           +IF   KK   +L   L +    V +IHG+  Q
Sbjct: 545 DQDKRSYLLDLLSSIRDGPEYSKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQ 604

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           + R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P   E Y+HRIGRTGR G 
Sbjct: 605 KEREEALRCFRSGDCPILVATAVAARGLDIPHVTHVINFDLPTDVEEYVHRIGRTGRMGN 664

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            G A +    ++      + +L+ +    + G L  +
Sbjct: 665 LGVATSFFNDKNRNICSDLLELLIETKQEIPGFLEEM 701


>gi|296130315|ref|YP_003637565.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
 gi|296022130|gb|ADG75366.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
          Length = 598

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 134/400 (33%), Positives = 213/400 (53%), Gaps = 7/400 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  + P++V A+  AG  +P PIQ  T+P+ L  HD+ G A+TGTGKT  F +P+L 
Sbjct: 49  SFADFDVRPEIVAALAAAGITQPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGVPLLH 108

Query: 62  ILEKGRARVRM-------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L++ PTRELA QVA +         + +  + GG  +E 
Sbjct: 109 RVIAPGEDGYDRLPAPGEPQALVVVPTRELAVQVAGDLAMASTGRKVRIVQVYGGRAYEP 168

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L+RGADV++ TPGR++D  N+  L + +   +V+DEAD MLD+GF+P ++ + +  
Sbjct: 169 QVEALQRGADVVVGTPGRMIDLLNQRHLRLKHATEVVLDEADEMLDLGFLPDVEKLLAAT 228

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  R T+LFSATM   +  ++  ++  P  I  + P    +T+++     Y  ++     
Sbjct: 229 PPNRHTMLFSATMPGAVVAMARRYMSQPTHIRASAPDDEGQTVKNIKQVAYRAHALDKVE 288

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L   +         I+F   K+    +   L ++GF+  AIHG++ Q +R + L  F+ G
Sbjct: 289 LLARILQARGRGLTIVFARTKRTAAKVADELVERGFAAGAIHGDLGQGAREQALRAFRHG 348

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+  P   + Y+HR GRTGRAG  G A T V  +DI
Sbjct: 349 KVDVLVATDVAARGIDVEDVTHVVNYQCPEDEKTYLHRTGRTGRAGNKGTAVTFVDWDDI 408

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
                I+K +   +       SS     E +D+ +    R
Sbjct: 409 PRWGLIDKALGLGIPEPVETYSSSPHVREDLDVPEGVTGR 448


>gi|255657870|ref|ZP_05403279.1| ATP-dependent RNA helicase DeaD [Mitsuokella multacida DSM 20544]
 gi|260850060|gb|EEX70067.1| ATP-dependent RNA helicase DeaD [Mitsuokella multacida DSM 20544]
          Length = 441

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 132/432 (30%), Positives = 227/432 (52%), Gaps = 13/432 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+ P +   +   G  + TP+Q K +PLV   HD    AQTGTGKT +F+LP++ 
Sbjct: 3   TFQELGIRPALCDVLRSHGIKEATPVQEKAMPLVRAGHDCIVKAQTGTGKTLAFLLPIIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +  + + L++ PTRELA Q+A   +      +++  ++ GG   E Q +KL R
Sbjct: 63  KIKP---QAAVTQALVITPTRELAIQIAKVAQSLSAAADISSLVIFGGQDIERQKQKLRR 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH  R  + ++ +  +V+DEAD M+ +GFI  ++ +       RQ +
Sbjct: 120 HPQLIIGTPGRLLDHLRRQTIDLSQVNKVVLDEADEMMRLGFIEDVETLLEATAADRQLM 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++ +S  ++  P+ +E+ +   T + I            +        + +
Sbjct: 180 LFSATMPDRVKALSARYMTAPQNLEIKSEHVTLDAI---DQVIIDTREETKIDKLCEIIN 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q+     ++FC+ K+    +  +L  +G+ V  +HG++ Q  R  +L  F++  +Q++ A
Sbjct: 237 QEQPYLAMVFCHTKQRAHMVTMALAARGYLVDELHGDLSQVQRTLVLKRFRKAELQILCA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V HVFN+D+P+ AE+YIHRIGRTGRAG  GKA T V       +  IE
Sbjct: 297 TDIAARGLDIEGVTHVFNYDIPHDAESYIHRIGRTGRAGERGKAITFVNARQYDLLRRIE 356

Query: 362 -----KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ--KSTGFDRRKKNYS 414
                ++ +++ +            L++I   +     K  P+ +     G   + +N  
Sbjct: 357 GGIKDRIRKQRSERGRRHKEKQEQILKEIREKREEKKAKRKPLSKYANRKGASHKGRNDR 416

Query: 415 SQKSHIPLKESE 426
           S++      +S 
Sbjct: 417 SRRQKAHGTKSN 428


>gi|50551911|ref|XP_503430.1| YALI0E01782p [Yarrowia lipolytica]
 gi|74634065|sp|Q6C7D2|HAS1_YARLI RecName: Full=ATP-dependent RNA helicase HAS1
 gi|49649299|emb|CAG79009.1| YALI0E01782p [Yarrowia lipolytica]
          Length = 605

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 117/388 (30%), Positives = 201/388 (51%), Gaps = 6/388 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ + LS   + ++ D G+   TP+Q KTIP +L   DV G A+TG+GKT +F++P + +
Sbjct: 133 FSTIPLSENTMQSLKDMGFETMTPVQEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEM 192

Query: 63  LEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L K + + R    +I+  PTRELA Q+         N++ T+ ++IGG     + +KL +
Sbjct: 193 LRKLKFKPRNGTGVIVVSPTRELALQIYGVARDLMANHSQTLGIVIGGNNRRQEEEKLNK 252

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           G ++L+CTPGR +    N    +  N++ L+IDEADR+L++GF   ++ I  ++P  RQ+
Sbjct: 253 GVNLLVCTPGRLLDHLQNSQGFVFKNLKALIIDEADRILEIGFEQEMKEIIKILPKERQS 312

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT T +++ ++   L+           + + T E          S K  LL     
Sbjct: 313 MLFSATQTTKVEDLARISLKKGPLYLNVDEHNVSSTAEGLEQGYVVCDSDKRFLLLFSFL 372

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  K  I+F +   +V      L      V  +HG   Q+ R      F      +++
Sbjct: 373 KRNAGKKIIVFLSSCNSVKFYGELLNYIDLPVLDLHGKQKQQKRTNTFFEFINAKQGVLI 432

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARGLDIP V  +  FD P+   +YIHR+GRT R    GK+   +   ++  +  +
Sbjct: 433 CTDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVGRTARGSASGKSIMFLTPSELGFLRYL 492

Query: 361 EKLIEKKV---DWLNGDLSSLNPPLEKI 385
            K  +  +   ++ N  ++++   LEK+
Sbjct: 493 -KAAKVPLNEYEFPNKKIANVQSQLEKL 519


>gi|320036344|gb|EFW18283.1| ATP-dependent RNA helicase dbp4 [Coccidioides posadasii str.
           Silveira]
          Length = 805

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 118/454 (25%), Positives = 198/454 (43%), Gaps = 24/454 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L LS   +  +  + +   T IQ + +P  ++  D+ G A+TG+GKT +F++P + 
Sbjct: 49  SFSELPLSDATLQGLSASHFKTLTDIQSRAVPHAIKGRDILGAAKTGSGKTLAFLVPVLE 108

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  K          LIL PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L 
Sbjct: 109 NLYRKQWTEYDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLQEEQERLG 168

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +           ++I++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 169 RMNILVCTPGRMLQHMDQTAAFDTDHIQMLVLDEADRIMDMGFQSTVDAIVEHLPKERQT 228

Query: 181 LLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT T ++      +             SS                 K   L   + 
Sbjct: 229 MLFSATQTKKVSDLARLSLRDPEYISVHEAASSATPASLQQHYVVTPLPEKLDTLWSFIR 288

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +  +        +++   V       + G  +  +HG   Q +R+ I S F       +
Sbjct: 289 NTLKSKILVFFSSSKQVRFVYEAFRHMQPGIPLLHLHGRQKQSARIDITSKFSRAKYSCL 348

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            ++D+AARGLD P V  V   D P  A+ YIHR+GRT R  R G+A   +   + + +  
Sbjct: 349 FSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEEGM-- 406

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +++L +KK+            P+E+I+I         N +  ++  F      Y  QK+ 
Sbjct: 407 LKRLEQKKI------------PIERINIKAKKQQSIVNQL--QNMCFKDPALKYLGQKAF 452

Query: 420 IPLKESEKISKLQQDIQ------ENDADSLGFRG 447
               +S  I K +          E  A SLG  G
Sbjct: 453 TSYVKSVHIQKDKDVFNVKSLPLEEFASSLGLPG 486


>gi|262376303|ref|ZP_06069533.1| ATP-dependent RNA helicase rhlB [Acinetobacter lwoffii SH145]
 gi|262308904|gb|EEY90037.1| ATP-dependent RNA helicase rhlB [Acinetobacter lwoffii SH145]
          Length = 383

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 127/372 (34%), Positives = 195/372 (52%), Gaps = 6/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P +  A+   G+   TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 5   FETLNLHPNLKKAIDALGFTTMTPIQQKVLKFTLAGHDAIGRAQTGTGKTAAFLISIMND 64

Query: 63  LEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L     + +     PR LIL PTRELA Q+  + +   K   L V  L+GG+ F+ Q  +
Sbjct: 65  LLNNPIQEQRYRGEPRALILAPTRELALQIESDAQDLAKYAGLNVVTLLGGVDFDKQKNQ 124

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             +   D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P  
Sbjct: 125 LNKAPVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPRK 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q      + T     V     Q              +T        Y         L Q
Sbjct: 185 EQRQTLMFSAT-FSYDVLNLAQQWLFEPVTVEIEPEKKTNADVEQRVYMVAKADKYKLLQ 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   + ++  +IF N++  V  L   L++ G+ V  + G I Q  R+K+L  FK G   
Sbjct: 244 EILRDEPIEKVMIFANRRDQVRKLYDHLKRDGYKVVMLSGEIAQDKRLKMLDQFKNGKHN 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +M+A+D+A RG+ +  V HV NF +P ++++Y+HRIGRTGRAG  G + + +A++D  ++
Sbjct: 304 IMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGTSGVSISFLAEDDAFYL 363

Query: 358 DAIEKLIEKKVD 369
             IEK I +K+ 
Sbjct: 364 PEIEKAIGQKLP 375


>gi|303313405|ref|XP_003066714.1| ATP-dependent RNA helicase DBP4, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240106376|gb|EER24569.1| ATP-dependent RNA helicase DBP4, putative [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 805

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 118/454 (25%), Positives = 198/454 (43%), Gaps = 24/454 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L LS   +  +  + +   T IQ + +P  ++  D+ G A+TG+GKT +F++P + 
Sbjct: 49  SFSELPLSDATLQGLSASHFKTLTDIQSRAVPHAIKGRDILGAAKTGSGKTLAFLVPVLE 108

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  K          LIL PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L 
Sbjct: 109 NLYRKQWTEYDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLQEEQERLG 168

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +           ++I++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 169 RMNILVCTPGRMLQHMDQTAAFDTDHIQMLVLDEADRIMDMGFQSTVDAIVEHLPKERQT 228

Query: 181 LLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT T ++      +             SS                 K   L   + 
Sbjct: 229 MLFSATQTKKVSDLARLSLRDPEYISVHEAASSATPASLQQHYVVTPLPEKLDTLWSFIR 288

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +  +        +++   V       + G  +  +HG   Q +R+ I S F       +
Sbjct: 289 NTLKSKILVFFSSSKQVRFVYEAFRHMQPGIPLLHLHGRQKQSARIDITSKFSRAKYSCL 348

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            ++D+AARGLD P V  V   D P  A+ YIHR+GRT R  R G+A   +   + + +  
Sbjct: 349 FSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEEGM-- 406

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +++L +KK+            P+E+I+I         N +  ++  F      Y  QK+ 
Sbjct: 407 LKRLEQKKI------------PIERINIKAKKQQSIVNQL--QNMCFKDPALKYLGQKAF 452

Query: 420 IPLKESEKISKLQQDIQ------ENDADSLGFRG 447
               +S  I K +          E  A SLG  G
Sbjct: 453 TSYVKSVHIQKDKDVFNVKSLPLEEFASSLGLPG 486


>gi|159484128|ref|XP_001700112.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158272608|gb|EDO98406.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 637

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 112/408 (27%), Positives = 186/408 (45%), Gaps = 18/408 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD+ L P V+  +   G  KPT IQ++ +P+ L   D+ GIA TG+GKT  F LPM+ 
Sbjct: 192 SFADMKLPPAVLRVLASKGIKKPTQIQMQGLPVALSGRDMIGIASTGSGKTLVFTLPMIL 251

Query: 62  ILEKGRARVR-----MPRTLILEPTRELAAQVADNFEKYGKNYN-------LTVALLIGG 109
           I  +   R+       P  +++ P+RELA Q  +  + Y +  N         +  + G 
Sbjct: 252 IALQEEMRMPLGQNEGPIGMVICPSRELATQTYEIADMYCQALNADRYPEVRVMLCIGGI 311

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
            P             V+            +   L     + + +    +  +GF   +++
Sbjct: 312 DPKPMYETLRRGLHAVVATPGRLKDLLHKKRMNLDICRYLCLDEADRMVDQVGFEDDVRD 371

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I S     RQTL+FSATM  +++     F ++     V      A       +       
Sbjct: 372 ILSFFRGQRQTLMFSATMPAKIKA----FAESALVDPVEVNVGRAGAANMDVIQEVEYVK 427

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           ++  L   L   Q T    ++F   K++V  +   L  QG    A+HG+  Q  R   ++
Sbjct: 428 EEAKLPYLLECLQKTAPPVLVFAENKRDVDIIHEYLLVQGVEAVAVHGDKAQEDRHAAIA 487

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK+G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T +
Sbjct: 488 SFKKGDADVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRCGKTGVATTFI 547

Query: 350 AKEDIKH--IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
             +      +  ++ L+++    +   L +L+ PLE     +     K
Sbjct: 548 NTKQCSETILLDLKHLLKEAKQRVPHFLLALDDPLEAQAELEEKSGIK 595


>gi|262171576|ref|ZP_06039254.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
 gi|261892652|gb|EEY38638.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
          Length = 412

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 148/403 (36%), Positives = 226/403 (56%), Gaps = 7/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +   V   GY  PT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 15  MPFSQLGLSDVLTQTVARLGYQTPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 74

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YGK+  L    + GG+  +AQ ++L
Sbjct: 75  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 134

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 135 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 194

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  + +P  I +    ++   I    +                 
Sbjct: 195 FLLFSATLSRKVRELAKTAVNDPYEISIAANQASKSNISQWLITVDKDTKSALLSHL--- 251

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 252 INEQQWDQALIFIETKHGAAKLVTQLEKRGIQAEAFHSGRSQAIRAQLLEDFKSGKIKYL 311

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 312 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRADAVGEAISFVSKDNFKNLCM 371

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           IE  +   ++     +     P + + I+  N+  K+  + Q+
Sbjct: 372 IESRLGHLIER---RVVEGFEPKKPVPISILNYVPKHKRVQQE 411


>gi|195111735|ref|XP_002000433.1| GI10230 [Drosophila mojavensis]
 gi|193917027|gb|EDW15894.1| GI10230 [Drosophila mojavensis]
          Length = 801

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 135/397 (34%), Positives = 205/397 (51%), Gaps = 20/397 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L+  +   V  A Y KPTP+Q   IP+++   D+   AQTG+GKTA+F++P+L 
Sbjct: 291 SFDDVQLTEIIRNNVNLARYDKPTPVQKYAIPIIISGRDLMACAQTGSGKTAAFLVPILN 350

Query: 62  ILE------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            +             +   R + P  L+L PTRELA Q+ +  +K+     +  A+L GG
Sbjct: 351 QMYELGLSAPPQSNRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGG 410

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q ++L+RG  +++ TPGR+ D   RGK+ + NI  LV+DEADRMLDMGF P I+ 
Sbjct: 411 NNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRR 470

Query: 170 ITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I   +           +FSAT   ++Q+++ +FL N   + V    ST+E I    +  Y
Sbjct: 471 IVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVY 530

Query: 226 AQYSKKCALLQ----QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
            Q  +   L      +           +IF   KK   +L   L +    V +IHG+  Q
Sbjct: 531 DQDKRSYLLDLLSSIRDGPEYSKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQ 590

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           + R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P   E Y+HRIGRTGR G 
Sbjct: 591 KEREEALRCFRSGDCPILVATAVAARGLDIPHVTHVINFDLPTDVEEYVHRIGRTGRMGN 650

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            G A +    ++      + +L+ +    + G L  +
Sbjct: 651 LGVATSFFNDKNRNICSDLLELLIETKQEIPGFLEEM 687


>gi|315282345|ref|ZP_07870774.1| probable ATP-dependent RNA helicase YqfR [Listeria marthii FSL
           S4-120]
 gi|313614006|gb|EFR87721.1| probable ATP-dependent RNA helicase YqfR [Listeria marthii FSL
           S4-120]
          Length = 435

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 136/429 (31%), Positives = 221/429 (51%), Gaps = 15/429 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G  P +  A+   G+ +PT +Q K IP +L+   + G +QTGTGKT +F+LP++  
Sbjct: 7   FDQFGFQPFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINN 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKLE 120
           +   +  V+     I  P+RELA Q+ +   K  K     +A+   IGG   +    KL+
Sbjct: 67  VNPEKDAVQAV---ITAPSRELATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++  + LVIDEAD  LDMGF+  + +I   +P   Q 
Sbjct: 124 KQPQIIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQM 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+  +L+     +++NP+   +    + ++T+EH      A  S+    L + + 
Sbjct: 184 LVFSATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEH---RIMATRSRNKIDLLKNVL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F N K     + + L ++G  V  IHG+++ R R + +   +    Q +V
Sbjct: 241 VGSQPYLAIVFTNTKTTADEVANGLVERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI  + HV N+++P+  + YIHR GRTGRAG  G A TL    D   ++ +
Sbjct: 301 ATDLAARGIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQL 360

Query: 361 EKL-IE-KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK-STGFDRRKKNYSSQK 417
           EK+ IE K VDW N +  +L    E  +      A++    P++       ++K   + K
Sbjct: 361 EKMGIEFKHVDWKNKEFVTL----EDRNRRAKREAKRETADPREIGMRKKAKQKGKPNYK 416

Query: 418 SHIPLKESE 426
             I  K +E
Sbjct: 417 KKINYKMNE 425


>gi|84997461|ref|XP_953452.1| DEAD-box family ATP-dependent helicase [Theileria annulata strain
           Ankara]
 gi|65304448|emb|CAI76827.1| DEAD-box family ATP-dependent helicase, putative [Theileria
           annulata]
          Length = 535

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 124/407 (30%), Positives = 213/407 (52%), Gaps = 10/407 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  +S  ++ A+ +  ++K T IQ K IP +LQ  DV G A+TG+GKT +F++PM  +
Sbjct: 72  FSDFEISEPILKALTENNFIKTTEIQAKCIPPLLQGKDVLGKAKTGSGKTLAFLIPMAEV 131

Query: 63  LEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +   R      I+ PTREL+ Q+ +  ++  K    T+ L++GG   + +  KL +
Sbjct: 132 LYQVKFMPRNGTGGLIISPTRELSLQIFEVGKEICKYLPQTLGLVMGGANRKQEEFKLVK 191

Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           G ++LI TPGR+LDH    K  +  N+ + VIDEADR+L +GF   +  I  L+P  RQT
Sbjct: 192 GVNILIATPGRLLDHMQNTKGFVYKNLMVFVIDEADRILQIGFEQEMNQIIKLLPKNRQT 251

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT T  +  ++   L++P  ++         T+           ++   +L     
Sbjct: 252 SLFSATHTSNVDDLARLSLKSPIFLQ--VSGMENATVSGLEQGYVVCEAENRFMLLYTFL 309

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  K  ++F +   +V      L      V  IHG   Q +R+    +F + T   ++
Sbjct: 310 KKNLDKKIMVFFSSCNSVKFHDELLNYVDIPVKCIHGKKKQTNRLTTYYSFCKATKGHLL 369

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHIDA 359
            +D+AARGLDIP V  +  +D P+  ++YIHR+GRT R     GKA   +  E++  +  
Sbjct: 370 CTDVAARGLDIPKVDWIVQYDPPDDPKDYIHRVGRTARGAEGKGKAILFLMPEELGFLHY 429

Query: 360 IEKLIEKKVDWLNGDLS---SLNPPLEKIDIAQHNHARKNNPIPQKS 403
           + K +   ++  + +LS   ++   LEK+ I ++ H  +++    +S
Sbjct: 430 L-KSLNVTINKYDFNLSKIANVQIHLEKL-IEKNYHLNRSSKEAYRS 474


>gi|310644435|ref|YP_003949194.1| dead/deah box helicase domain protein [Paenibacillus polymyxa SC2]
 gi|309249386|gb|ADO58953.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
          Length = 525

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 144/420 (34%), Positives = 226/420 (53%), Gaps = 9/420 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LG+    V A+ + G   PTP+Q ++IPL+++  DV   A TGTGKT +F+LP+L 
Sbjct: 3   NFTALGVEQHWVEALKEQGISAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            L       R P+ L++ PTRELA Q+ +  +           L + G    E Q +KL+
Sbjct: 63  KLNL---DKRHPQALVIAPTRELALQITEEAKCLAAAEPSLSLLAVYGGQDVERQLRKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA ++I TPGR+LDH  RG L +  I++LV+DEAD+ML MGF+  ++ I   VP+ RQT
Sbjct: 120 GGAQLIIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEVPYRRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++K++  ++  P  ++V + SS    +            +        + 
Sbjct: 180 MLFSATMPAGIRKLARVYMNEPVDVKVKSASSVP--VSQIRQVVVQTTDRGKQQALVDML 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D     +IFC  K+    L   L++ GF    +HG++ Q  R +++  F+E  +QL+V
Sbjct: 238 NTDRPYLAVIFCRTKRRASKLNEELQEMGFESGELHGDLSQNKREQVMKAFREAKLQLLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P  AE+YIHRIGRTGRAG  G A TL    D+  +  I
Sbjct: 298 ATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPELRNI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP---QKSTGFDRRKKNYSSQK 417
           +++         G       P       +++ + +N+        + G  R  +  S ++
Sbjct: 358 QRVAGVTFTSSEGGGQRRPAPDTAERQGRNDRSGRNDRRSFGGNDAGGGRRSGREQSGRR 417


>gi|194468331|ref|ZP_03074317.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
           100-23]
 gi|194453184|gb|EDX42082.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
           100-23]
          Length = 457

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 121/451 (26%), Positives = 208/451 (46%), Gaps = 20/451 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  L P ++ A+    + +PTP+Q + IP+++    V G + TG+GKT +F+LP+ +
Sbjct: 5   KFADFQLQPYLLTAIQKINFRQPTPVQQQVIPVIMAGRSVVGQSATGSGKTHAFLLPIFS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +      V+   T             A    KY  +       + G       ++   +
Sbjct: 65  KINPEDQTVQAVITTPSRELAYQIYNAAKQLNKYAPHPLTIHNYVGGTDKQHQVDQLSRK 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LD      L ++  ++ V+DEAD  LDMGF+  +  I S  P   Q +
Sbjct: 125 QPQLVIGTPGRVLDLIKSQALDIHTAKMFVVDEADMTLDMGFLHEVDQIASHFPDDLQMM 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +L+   + +++NP   E+ T +     +++  ++T  Q   +         +
Sbjct: 185 VFSATIPQKLRPFLKKYMENPVVEEIPTEAVINPDVDNWLMSTKGQDRNQLIYRLL---T 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F N K+  V L   LE QG  V  IHG ++ R R + +   ++   Q +VA
Sbjct: 242 LGEPYLALVFANTKERAVELTQYLENQGLKVAMIHGGLEARRRKRTMRQIRDLEYQYVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+DI  V  V N D+P   E ++HR+GRTGR G  G A TL    +    D I 
Sbjct: 302 TDLAARGIDIDGVSLVINDDLPTDLEYFVHRVGRTGRNGMKGTAITLYEPAED---DLIA 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR------------- 408
           KL E+ V ++  +L +           + ++ R+ N +     G+ +             
Sbjct: 359 KLEERGVKFVPKELKNGQLVTTHDRNRRKHYKRRQNELDPSMKGYVKKTKKKVKPGYKKR 418

Query: 409 -RKKNYSSQKSHIPLKESEKISKLQQDIQEN 438
            +K     ++    L+   KI K ++  Q+ 
Sbjct: 419 IKKAIKEDEQQKRKLELRHKIRKAKRARQKQ 449


>gi|85705347|ref|ZP_01036446.1| putative ATP-dependent RNA helicase protein [Roseovarius sp. 217]
 gi|85670220|gb|EAQ25082.1| putative ATP-dependent RNA helicase protein [Roseovarius sp. 217]
          Length = 438

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 143/383 (37%), Positives = 229/383 (59%), Gaps = 6/383 (1%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F ++GL   +V  + + G  +PTPIQ   IP  L   DV G+AQTGTGKT +F LP+
Sbjct: 1   MNLFDEMGLPAALVRKLANEGITEPTPIQTHAIPHALNGFDVLGLAQTGTGKTMAFGLPL 60

Query: 60  LT--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +T  + E G+   +  R+LIL PTRELA Q+ D+     K+  + + L++GG     Q K
Sbjct: 61  ITRLMEEPGKPAPKTIRSLILAPTRELAGQIRDSLLPLVKDSPIKIGLVVGGASINPQIK 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +LE+G D+L+ TPGR+LD  +R  + ++    LV+DE D+MLD+GFI  ++ I  L+   
Sbjct: 121 RLEQGIDILVATPGRLLDLIDRRAVRLDAARFLVLDEGDQMLDLGFIHALRRIAGLLAAE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSATM  ++++++ ++L+NPKR++V+ P   A+ +                +   
Sbjct: 181 RQTMMFSATMPKQMEELAGSYLRNPKRVQVSPPGKAADKVTQEVHFIAKASKPDLLIELL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               +   +  ++F   K     L   LE+ GF+V  IHGN  Q  R + L  F++G ++
Sbjct: 241 ---GKHKSELALVFGRTKHGSDKLAKRLEQAGFAVATIHGNKSQGQRERALKAFRDGQVK 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIPDV HV+N+++PN  +NY+HRIGRT RAG+ G A    A +++  +
Sbjct: 298 ILVATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGEL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNP 380
             I+K++   +   +G    + P
Sbjct: 358 KDIQKVLGTTIPVASGRPWEVLP 380


>gi|330685975|gb|EGG97598.1| DEAD-box ATP-dependent RNA helicase CshB [Staphylococcus
           epidermidis VCU121]
          Length = 447

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 133/439 (30%), Positives = 214/439 (48%), Gaps = 14/439 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL+  ++ AV D  + KPT IQ + IP +L+  ++ G +QTGTGK+ SF+LP++  
Sbjct: 6   FEHFGLNSSMIEAVKDLKFEKPTEIQNRIIPRILKGTNIIGQSQTGTGKSHSFLLPLVNQ 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNKKLER 121
           ++     +  P+ +++ PTRELA Q+               A L IGG   E   ++  +
Sbjct: 66  IDT---DIHEPQAIVVAPTRELAQQLYQAANHLSGFKEGVNAKLFIGGTDIEKDRQRCNQ 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L  +    L+IDEAD M+D+G I  +  I S +       
Sbjct: 123 QPQLVIGTPTRINDLAKSGHLHTHLASYLIIDEADLMIDLGLIEDVDFIASRLEEHSNIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+   LQ     +L+ P  +EV++ S   + IE   + T      +  L       
Sbjct: 183 VFSATIPKSLQPFLNKYLEQPDFVEVDSQSQNKKNIEFYLIPTKGTAKVEKTLKL---ID 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFCN + +   L  +L + G  V  IHG +  R R + +   +    Q ++A
Sbjct: 240 ILNPYLCIIFCNSRDSADELARTLNEAGIKVGMIHGGLTPRERKQQMKRIRNLDFQFVIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++ +++ AIE
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYRGVAITLYSPDEEENVSAIE 359

Query: 362 K--LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-----KKNYS 414
               + + VD  N +L+ +     +    + +    N    +  +   R+     KK + 
Sbjct: 360 DRGYVFENVDIKNDELTPIKAHNTRRTRQRKDDHLTNEVKNKVRSKTKRKVKPGYKKKFK 419

Query: 415 SQKSHIPLKESEKISKLQQ 433
            +   +  +E ++ SK Q 
Sbjct: 420 QEVERMKRQERKQFSKRQN 438


>gi|255580688|ref|XP_002531166.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223529236|gb|EEF31209.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 585

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 136/390 (34%), Positives = 210/390 (53%), Gaps = 15/390 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA++ L   +   +    YVKPTP+Q   IP++L   D+   AQTG+GKTA+F  P+++
Sbjct: 129 TFAEIDLGEALNQNIRRCKYVKPTPVQRNAIPIILAGRDLMACAQTGSGKTAAFCFPIIS 188

Query: 62  ILEKGRA-------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            + + +        R   P  LIL PTREL+ Q+ D  +K+     + V +  GG P   
Sbjct: 189 GIMREQYVQRPRGPRTVYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQ 248

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
           Q ++LERG D+L+ TPGR++D   R ++ +  I  L +DEADRMLDMGF P I+     +
Sbjct: 249 QLRELERGVDILVATPGRLVDLLERARISLQMIRYLALDEADRMLDMGFEPQIRKIVEQM 308

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
               P  RQT+LFSAT   E+Q+++ +FL +   + V    S+ + I       +    +
Sbjct: 309 DMPPPGRRQTMLFSATFPKEIQRLASDFLASYIFLAVGRVGSSTDLIVQRVEFVHETDKR 368

Query: 231 KCALL----QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              +     Q+  +        ++F   KK   +L + L   GF    IHG+  Q+ R  
Sbjct: 369 SHLMDLLHAQRETEINIKHSLTLVFVETKKGADSLENWLCVNGFPATTIHGDRTQQEREM 428

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G A 
Sbjct: 429 ALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLAT 488

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
               + ++     +  L+++    +   L+
Sbjct: 489 AFFNENNLSLARPLADLMQEANQEVPAWLT 518


>gi|148709265|gb|EDL41211.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Mus musculus]
          Length = 633

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 195/389 (50%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G + PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 193 SFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 252

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 253 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 312

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 313 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 372

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 373 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKE 428

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 429 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 488

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 489 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 548

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 549 KACDESVLMDLKALLLEAKQKVPPVLQVL 577


>gi|270047502|ref|NP_598820.2| probable ATP-dependent RNA helicase DDX41 [Mus musculus]
 gi|74142777|dbj|BAE33914.1| unnamed protein product [Mus musculus]
          Length = 622

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 195/389 (50%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G + PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 182 SFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 361

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 362 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKE 417

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 538 KACDESVLMDLKALLLEAKQKVPPVLQVL 566


>gi|320095784|ref|ZP_08027429.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319977291|gb|EFW08989.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 575

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 146/418 (34%), Positives = 218/418 (52%), Gaps = 19/418 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FAD G++  +V A+ D G   P PIQ  T+   L RHD+ G A+TGTGKT  F +P+  
Sbjct: 79  SFADFGVTDPIVDALEDQGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLGFGIPVLE 138

Query: 60  -----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                             P+ LI+ PTREL+ QVA +     K  +  +  + GG+ FE 
Sbjct: 139 DVIAPDEPGFDDLLNPNSPQALIVLPTRELSKQVASDLRAAAKYLSTRIVEIYGGVAFEP 198

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L++GADV++ TPGR++D   +G L ++ +E +V+DEAD MLD+GF+P ++ + S V
Sbjct: 199 QISALKKGADVVVGTPGRLIDLLRQGHLHLSGVETVVLDEADEMLDLGFLPDVETLLSRV 258

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  R T+LFSATM   +  ++  F+++P  I    P    +T+       Y  +S     
Sbjct: 259 PSHRHTMLFSATMPGPVVALARKFMEHPTHIRAQDPDDQHQTVNTVKQVVYRVHSLNKVE 318

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +         +IFC  K+    L   L  +GF+V ++HG++ Q +R + L  F+ G
Sbjct: 319 VLARILQSKGRGRAVIFCRTKRTAARLGEDLAARGFAVGSLHGDLGQGAREQALRAFRNG 378

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+  P   + YIHRIGRTGRAG  G A T V  +D 
Sbjct: 379 KVDVLVATDVAARGIDVDDVTHVVNYQCPEDEKIYIHRIGRTGRAGNSGTAVTFVDWDDT 438

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
                I K +   V            PLE    + H     +  IP+ +TG   R K 
Sbjct: 439 PRWSLISKALGLGVPE----------PLETYHTSPHLFT--DLDIPEGTTGRLPRAKR 484


>gi|315604928|ref|ZP_07879985.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313364|gb|EFU61424.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 598

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 145/418 (34%), Positives = 219/418 (52%), Gaps = 19/418 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD G++  +V A+ D G   P PIQ  T+   L RHD+ G A+TGTGKT  F +P+L 
Sbjct: 71  SFADFGVTDPIVDALEDKGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLGFGIPVLE 130

Query: 62  ILEKGRAR-------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ LI+ PTREL  QVA +     K  +  +  + GG+ FE 
Sbjct: 131 DVIAPDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLRDAAKYLSTRIVEIYGGVAFEP 190

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L RGAD+++ TPGR++D   +G L ++ +E +V+DEAD MLD+GF+P ++ +   V
Sbjct: 191 QIEALTRGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVETLLGRV 250

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  R T+LFSATM   +  ++  F+ +P  I    P    +T+       Y  ++     
Sbjct: 251 PENRHTMLFSATMPGPVVALARRFMVHPTHIRAQDPDDQNQTVNTVKQVIYRVHAMNKVE 310

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +   +     +IFC  K+    L   L  +GF+V A+HG++ Q +R + L  F++G
Sbjct: 311 VVARILQAEGRGRTVIFCRTKRTAARLGEDLTARGFAVGALHGDLGQGAREQALRAFRKG 370

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+  P   + YIHRIGRTGRAG  G A T V  +D 
Sbjct: 371 KVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGNSGTAVTFVDWDDT 430

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
                I K +             +  PLE    + H     +  IP+ +TG   R K 
Sbjct: 431 PRWSLISKALGL----------GVPDPLETYHTSPHLFT--DLDIPEGTTGRLPRAKR 476


>gi|291514657|emb|CBK63867.1| Superfamily II DNA and RNA helicases [Alistipes shahii WAL 8301]
          Length = 690

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 223/401 (55%), Gaps = 15/401 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           DF+ LGLS +++ AV   G+  PT IQ  TIP +L   +D+   +QTGTGKTA+F LP+L
Sbjct: 26  DFSALGLSEEMLAAVQAKGFETPTSIQRLTIPRLLSGENDIIAQSQTGTGKTAAFGLPIL 85

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +E  +  V+     IL PTRELA Q A+    Y +   L++  + GG     Q ++L 
Sbjct: 86  QQIEPSKEGVQSI---ILVPTRELAVQAAEELLSYNRERRLSITAIYGGAAMSEQLRRLS 142

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+++ TPGR+LDH  RG L ++ +  LV+DEAD ML+MGF+  ++ I       R+ 
Sbjct: 143 RGVDIVVGTPGRVLDHIRRGTLKLDKVRFLVLDEADEMLNMGFVEDVEEIMGHTGEDRRV 202

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + + ++SE +++N + + V +   TA+     +                 ++
Sbjct: 203 LLFSATMPERIIRLSEAYMRNTEVLRVESQHLTADLTNQIYFEVREADKFDAMTRIIDIE 262

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                  GI+FC  K  V  +   L  QG+S   +HG++ Q  R KIL  F++  + ++V
Sbjct: 263 PDFY---GIVFCRTKIGVDEVATRLVAQGYSAEGLHGDVSQAQREKILRKFRDKAVNILV 319

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HV N+ +P  +E+Y+HRIGRTGRAG  G A T ++  +++  + +
Sbjct: 320 ATDVAARGIDVSNLSHVINYSLPQDSESYVHRIGRTGRAGNQGTAITFISGAELRRFNWM 379

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            + I+  +        +L  P    DI     A+  + + +
Sbjct: 380 MRDIKADIKR-----ETLPSPQ---DIVAMKRAKIKDDLQE 412


>gi|190573992|ref|YP_001971837.1| ATP-dependent RNA helicase DbpA [Stenotrophomonas maltophilia
           K279a]
 gi|190011914|emb|CAQ45535.1| putative ATP-dependent RNA helicase [Stenotrophomonas maltophilia
           K279a]
          Length = 458

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 123/402 (30%), Positives = 198/402 (49%), Gaps = 8/402 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ L LSP +   +   GY   TP+Q +++P +L   DV   A TG+GKTA+F L +L 
Sbjct: 3   DFSTLPLSPALQPGLDALGYTTLTPVQAQSLPAILNGRDVIAQAPTGSGKTAAFGLGLLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    RV+                        G      + L+ G             
Sbjct: 63  SIDPSLIRVQALVLC-PTRELADQVGKQIRKLATGIPNLKLLLLVGGVPLGPQLASLEGH 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+ +   +  L +  +  LV+DEADRMLDMGF   I+ I       RQ+L
Sbjct: 122 DPHVVVGTPGRVQELARKRALNLGAVRTLVLDEADRMLDMGFEEPIREIAGRTHKDRQSL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D ++ ++ + L++   + V                  A   K  A L      
Sbjct: 182 LFSATFPDSIRAMARDLLRDAVEVTVEGADQAPAIRHLFCEVEPAHRQKALAGLLL---- 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T ++ ++FCN +K+V  + +SL++ GFS  A+HG+++QR R ++L      +  ++VA
Sbjct: 238 KYTPESAVVFCNTRKDVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRSCNVLVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLD+ D+  V N+++P   E+Y HR+GRTGRAG  G A +LVA  +    +AIE
Sbjct: 298 SDVAARGLDVEDLAAVINYELPTDVESYQHRVGRTGRAGASGLAISLVAGREKTRAEAIE 357

Query: 362 KLIEKKVDWLNGDLSSLNP---PLEKIDIAQHNHARKNNPIP 400
             + + +DW    L++  P   P   +   + +  + +   P
Sbjct: 358 AQMGQPLDWQKTPLATSRPAELPQAAMRTLRIDGGKTDKLRP 399


>gi|84494615|ref|ZP_00993734.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
 gi|84384108|gb|EAP99988.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
          Length = 540

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 131/412 (31%), Positives = 217/412 (52%), Gaps = 9/412 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  + P +V A+   G   P PIQ  T+P+ L  HD+ G A+TGTGKT  F +P+L 
Sbjct: 34  SFSDFAIHPDIVSALAAHGITTPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPLLN 93

Query: 62  -------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                      G      P+ L + PTRELA QV+ + E+ GK   + V  + GG  +E 
Sbjct: 94  KVIARGDDKWDGFVHKGKPQALAVAPTRELAVQVSADLERAGKARGIRVLTVYGGRAYEP 153

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L +G +V++ TPGR++D   +G L +++ + +V+DEAD MLD+GF+P ++ + ++ 
Sbjct: 154 QIDALTKGVEVVVGTPGRLIDLAKQGHLDLSHAKTVVLDEADEMLDLGFLPDVEKLLAMT 213

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQN--PKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
              RQT+LFSATM   +  ++  ++      R        T++T++      Y  ++   
Sbjct: 214 SPGRQTMLFSATMPGAVVALARRYMTQPTHIRAMQEGEGDTSQTVKAITQHVYRAHAMDK 273

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             +   +   +     I+F   K+    +   L ++GF+  AIHG++ Q +R + L  F+
Sbjct: 274 VEMLARMLQANGRGLTIVFSRTKRTAAKVADDLAERGFAAAAIHGDLGQGAREQALRAFR 333

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G + ++VA+D+AARG+D+ +V HV N+  P   + Y+HRIGRTGRAG+ G A T V  +
Sbjct: 334 SGKVDVLVATDVAARGIDVENVTHVINYQCPEDEKTYVHRIGRTGRAGQTGIAVTFVDWD 393

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           D+     I K ++  +       SS     E++DI   +  R       ++ 
Sbjct: 394 DLHRWTMINKTLDLGIPDPEETYSSSAHFYEQMDIPVGSKGRLKKSEQTRAG 445


>gi|293189188|ref|ZP_06607912.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
 gi|292821860|gb|EFF80795.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
          Length = 502

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 146/418 (34%), Positives = 221/418 (52%), Gaps = 19/418 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD G++  +V A+ D G   P PIQ  T+   L+RHD+ G A+TGTGKT  F +P+L 
Sbjct: 64  SFADFGVTDPIVDALEDKGITHPFPIQALTLGPALERHDIIGQAKTGTGKTLGFGIPVLE 123

Query: 62  ILEKGRAR-------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ LI+ PTREL  QVA +  +  K  +  +  + GG+ FE 
Sbjct: 124 DVIAPDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLREAAKYLSTRIVEIYGGVAFEP 183

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERGAD+++ TPGR++D   +G L ++ +E +V+DEAD MLD+GF+P ++ + S V
Sbjct: 184 QIEALERGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVETLLSRV 243

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  R T+LFSATM   +  ++  F+  P  I    P    +T+       Y  ++     
Sbjct: 244 PENRHTMLFSATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNTVKQVIYRVHAMNKVE 303

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +   +     +IFC  K+    L   L  +GF+V ++HG++ Q +R + L  F+ G
Sbjct: 304 VVARILQAEGRGRTVIFCRTKRTAARLGEDLTARGFAVGSLHGDLGQGAREQALRAFRNG 363

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+  P   + YIHRIGRTGRAG  G A T V  +D 
Sbjct: 364 KVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGNSGTAVTFVDWDDT 423

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
                I K +             +  PLE    + H     +  IP+ +TG   R K 
Sbjct: 424 PRWSLISKALGL----------GVPDPLETYHTSPHLFT--DLDIPEGTTGRLPRAKR 469


>gi|153215195|ref|ZP_01949876.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 1587]
 gi|153831172|ref|ZP_01983839.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 623-39]
 gi|124114840|gb|EAY33660.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 1587]
 gi|148873341|gb|EDL71476.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 623-39]
 gi|327485046|gb|AEA79453.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae LMA3894-4]
          Length = 460

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 139/402 (34%), Positives = 226/402 (56%), Gaps = 9/402 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L L P+++  +   G+   TPIQ +++P +L+  DV G  +TG+GKTA+F L +L+
Sbjct: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+    L+L PTRELA QVA +    G+  +    L +  G+P   Q   LE
Sbjct: 65  NLNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH ++ ++ ++ +  LV+DEADRML+MGF   ++ I +  P  RQT
Sbjct: 122 HGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++++++  +N   I+V     T +T          + S       + L 
Sbjct: 182 LLFSATYPTSIEQIAQSVTRNALMIKVEA---THDTSSIRQYFYKVEGSAARDEALETLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + ++FCN K+ V N+  +L + GFSV  +HG+++QR R + L  F   +I ++V
Sbjct: 239 LHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFN+D+    E ++HRIGRTGRAG  G AF+  +  +   +  I
Sbjct: 299 ATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQI 358

Query: 361 EKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           ++ ++  ++   L    +   P    +   Q +  +K+   P
Sbjct: 359 DEYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRP 400


>gi|121727419|ref|ZP_01680547.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V52]
 gi|147673597|ref|YP_001218057.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O395]
 gi|262167586|ref|ZP_06035291.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC27]
 gi|262190509|ref|ZP_06048754.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae CT 5369-93]
 gi|121630191|gb|EAX62591.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V52]
 gi|146315480|gb|ABQ20019.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O395]
 gi|227014452|gb|ACP10662.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O395]
 gi|262024039|gb|EEY42735.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC27]
 gi|262033605|gb|EEY52098.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae CT 5369-93]
          Length = 460

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 139/402 (34%), Positives = 226/402 (56%), Gaps = 9/402 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L L P+++  +   G+   TPIQ +++P +L+  DV G  +TG+GKTA+F L +L+
Sbjct: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+    L+L PTRELA QVA +    G+  +    L +  G+P   Q   LE
Sbjct: 65  NLNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH ++ ++ ++ +  LV+DEADRML+MGF   ++ I +  P  RQT
Sbjct: 122 HGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++++++  +N   I+V     T +T          + S       + L 
Sbjct: 182 LLFSATYPTSIEQIAQSVTRNALMIKVEA---THDTSSIRQYFYKVEGSAARDEALETLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + ++FCN K+ V N+  +L + GFSV  +HG+++QR R + L  F   +I ++V
Sbjct: 239 LHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFN+D+    E ++HRIGRTGRAG  G AF+  +  +   +  I
Sbjct: 299 ATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQI 358

Query: 361 EKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           ++ ++  ++   L    +   P    +   Q +  +K+   P
Sbjct: 359 DEYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRP 400


>gi|293348206|ref|XP_001059856.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 41-like [Rattus
           norvegicus]
          Length = 1348

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 129/389 (33%), Positives = 196/389 (50%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L   ++  +   G + PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 229 SFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 288

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 289 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALCIGGV 348

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 349 SLKEQMETMRHGVHIMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 408

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 409 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKE 464

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 465 EAKMVYLLECLQKTPPPVLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 524

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 525 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 584

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 585 KACDESVLMDLKALLLEAKQKVPPVLQVL 613


>gi|194745552|ref|XP_001955251.1| GF16329 [Drosophila ananassae]
 gi|190628288|gb|EDV43812.1| GF16329 [Drosophila ananassae]
          Length = 784

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 134/397 (33%), Positives = 206/397 (51%), Gaps = 20/397 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L+  +   V  A Y KPTP+Q   IP+++   D+   AQTG+GKTA+F++P+L 
Sbjct: 286 SFDDVQLTEIIRNNVNLARYDKPTPVQKYAIPIIISGRDLMACAQTGSGKTAAFLVPILN 345

Query: 62  ILEKGRA------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            + +               R + P  L+L PTRELA Q+ +  +K+     +  A+L GG
Sbjct: 346 QMYEHGHSAPPQSNRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGG 405

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q ++L+RG  +++ TPGR+ D   RGK+ + NI  LV+DEADRMLDMGF P I+ 
Sbjct: 406 NNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRR 465

Query: 170 ITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I   +           +FSAT   ++Q+++ +FL N   + V    ST+E I    +  Y
Sbjct: 466 IVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVY 525

Query: 226 AQYSKKCALLQ----QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
            Q  +   L      +           +IF   KK   +L   L +    V +IHG+  Q
Sbjct: 526 EQDKRSYLLDLLSSIRNGPEYCKDNLTLIFVETKKGADSLEEFLFQCNHPVTSIHGDRTQ 585

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           + R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P+  E Y+HRIGRTGR G 
Sbjct: 586 KEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGN 645

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            G A +   +++      + +L+ +    +   L  +
Sbjct: 646 LGVATSFFNEKNRNICSDLLELLIETKQEIPNFLEDM 682


>gi|16800556|ref|NP_470824.1| hypothetical protein lin1488 [Listeria innocua Clip11262]
 gi|16413961|emb|CAC96719.1| lin1488 [Listeria innocua Clip11262]
          Length = 435

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 136/429 (31%), Positives = 221/429 (51%), Gaps = 15/429 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G  P +  A+   G+ +PT +Q K IP +L+   + G +QTGTGKT +F+LP++  
Sbjct: 7   FDQFGFQPFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINN 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKLE 120
           +   +  V+     I  P+RELA Q+ +   K  K     +A+   IGG   +    KL+
Sbjct: 67  VNPEKDAVQAV---ITAPSRELATQIYNEIRKVTKFSEKEIAVQLVIGGTDKQRAIDKLK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++  + LVIDEAD  LDMGF+  + +I   +P   Q 
Sbjct: 124 KQPQIIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQM 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+  +L+     +++NP+   +    + ++T+EH      A  S+    L + + 
Sbjct: 184 LVFSATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEH---RIMATRSRNKLDLLKNVL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F N K     + + L ++G  V  IHG+++ R R + +   +    Q +V
Sbjct: 241 VGSQPYLAIVFTNTKTTADEVANGLIERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI  + HV N+++P+  + YIHR GRTGRAG  G A TL    D   ++ +
Sbjct: 301 ATDLAARGIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPSDEDRLNQL 360

Query: 361 EKL-IE-KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK-STGFDRRKKNYSSQK 417
           EK+ IE K VDW N +  +L    E  +      A++    P++       ++K   + K
Sbjct: 361 EKMGIEFKHVDWKNKEFVTL----EDRNRRAKREAKRETADPREIGMRKKAKQKGKPNYK 416

Query: 418 SHIPLKESE 426
             I  K +E
Sbjct: 417 KKINYKMNE 425


>gi|281202503|gb|EFA76705.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 1173

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 111/437 (25%), Positives = 196/437 (44%), Gaps = 10/437 (2%)

Query: 3    FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
            F DLGL+P ++      G+  P+ IQ  TIP +L   D+   A+TG GKTA+F LP+L+ 
Sbjct: 662  FEDLGLAPWLLACCKQLGFKAPSNIQYNTIPAILSGRDILASAKTGQGKTAAFALPILSA 721

Query: 63   LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            L +          ++L PTRELA Q+ + F   G   N+   ++IGGI    Q+  L++ 
Sbjct: 722  LSE---DPYGIFAVVLTPTRELAVQIGEQFRALGSAINVNCCVVIGGIDNVQQSLILDKR 778

Query: 123  ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
              +++ TPGR+  H N G  L       ++ +    +                  +   L
Sbjct: 779  PHIIVATPGRLAAHLNNGMKLALQFCRFLVLDEADRMLGPDFELEVQKIVEHLPPKIQTL 838

Query: 183  FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
              +       K  E+       I  +            +       +K        L  +
Sbjct: 839  LYSATMTNSNKKLESIPIKNPYIFEDNNKYDTVETLSQYYVFMPAQAKD--CHLVYLLKK 896

Query: 243  DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                + I+F N  + V  +   L K      ++H  + Q+ R+  L  FK G I++++A+
Sbjct: 897  HDSSSVIVFINNCRTVEAVKGMLNKLDIKSVSLHSFLSQKDRLNALKQFKSGKIRVLIAT 956

Query: 303  DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
            D+A+RGLDIPDV  V N+ + N +++YIHR+GRT R GR G+A + V   D++ +  +E 
Sbjct: 957  DVASRGLDIPDVQMVINYKLSNSSKDYIHRVGRTARFGRSGRAISFVTPHDVELVKNVEA 1016

Query: 363  LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPL 422
             I K+++    +  ++   L +   A     RK   I      F  ++K    +++ +  
Sbjct: 1017 AIGKQLELYTTEDEAVYRHLGEASTA-----RKLVEIYLDEIEFGVKEKERRDERNELTR 1071

Query: 423  KESEKISKLQQDIQEND 439
            +  ++  +   + +E+ 
Sbjct: 1072 QMLDEKERNTNNNKESK 1088


>gi|149197724|ref|ZP_01874774.1| probable ATP-dependent RNA helicase [Lentisphaera araneosa
           HTCC2155]
 gi|149139294|gb|EDM27697.1| probable ATP-dependent RNA helicase [Lentisphaera araneosa
           HTCC2155]
          Length = 482

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 139/404 (34%), Positives = 218/404 (53%), Gaps = 11/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   ++ A+  AGY KPTPIQ K++ ++LQ  D    A+TGTGKTA+F +P L
Sbjct: 5   VQFQDLGLKKTILSAIYTAGYKKPTPIQNKSLKIILQGQDALVRAKTGTGKTAAFAIPAL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L      V+ P+ LIL P REL  Q++  F K GK         + G    +  KK  
Sbjct: 65  QHLRA---EVQHPQVLILTPGRELCKQISQEFIKLGKGLENFRVAEVTGGGKLSGVKKSL 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V+  TPGR++D   +G L  N I +LVIDEADR+ DMGF   + +I   +P + QT
Sbjct: 122 HGAQVISATPGRLIDIKEQGLLNSNCINMLVIDEADRLFDMGFREAVTSILKDLPKSVQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SAT TD+++  S+  L+ P  IE  +   + E +E   V+ Y    +    L + L 
Sbjct: 182 VLCSATFTDDIKNFSKTLLKKPVIIEDRSNIGSEENLEEWAVSVYP---ENHLKLTEKLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      I+FCN K+ V  +   L+  GF V  +H  +++  R + L  F++  ++++V
Sbjct: 239 KKHKNDQVIVFCNHKERVDEVAEKLDDMGFDVHPLHSGMEKNVRNQALKLFRDKQVRILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RG+DIP +  V N+D+P    +Y+HR GRT RAG+ G   +       K I + 
Sbjct: 299 ATDVASRGIDIPGLPLVVNYDLPYDFPDYVHRAGRTARAGKSGLVISFYNGRKEKTIKSF 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           E+   +++  +     S N  +++  ++Q   A+K     +K  
Sbjct: 359 EERTGRQMLRV-----SFNQIMDEKQVSQKPLAKKKQDSVRKKA 397


>gi|308272111|emb|CBX28719.1| DEAD-box ATP-dependent RNA helicase cshA [uncultured
           Desulfobacterium sp.]
          Length = 548

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 135/369 (36%), Positives = 214/369 (57%), Gaps = 9/369 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHD--VCGIAQTGTGKTASFVLPM 59
            F DLGLS KV+ A+   G+ +PT IQ+ TIP V+QR D  +   AQTGTGKTA+F LP+
Sbjct: 13  TFKDLGLSAKVLDAINKKGFEEPTAIQVMTIP-VMQRDDTNIIVQAQTGTGKTAAFGLPL 71

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + ++  G + V+    LIL PTRELA QV++       N ++ +A + GG   + Q ++L
Sbjct: 72  VEMVSTGSSMVQA---LILVPTRELAIQVSEEINSLRGNKDIVIAPIYGGQSIDQQLRRL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G  +++ TPGR++DH NR  L +  IE L++DEAD ML+MGFI  I+ I       ++
Sbjct: 129 QKGVHIVVGTPGRVIDHLNRKTLKLEKIEHLILDEADEMLNMGFIEDIEEIMKHTNPDKR 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT+   ++ ++  +++  + ++V     T    E  +    A            +
Sbjct: 189 TLLFSATIPQRIKDLAHKYMKGYEFLKVKKEQLTTNLTEQIYFEVKAHDK---FEALCRI 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   G+IFC  K +V ++   L  +G+   AIHG+I Q  R + L  FK+  + ++
Sbjct: 246 IDIKDGFYGLIFCRTKSDVDSVATHLMDRGYDAEAIHGDISQAQRERTLEKFKKQRVNIL 305

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ ++ HV N+ +P+  E Y+HRIGRTGRAG  G A T +   + K +  
Sbjct: 306 VATDVAARGIDVNNLTHVINYSLPHDTEAYVHRIGRTGRAGNVGTAITFITPSEYKGLMF 365

Query: 360 IEKLIEKKV 368
           I++  +  +
Sbjct: 366 IQRNAKTDI 374


>gi|296273501|ref|YP_003656132.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296097675|gb|ADG93625.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 412

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 130/365 (35%), Positives = 203/365 (55%), Gaps = 6/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L LS ++  ++ +  Y+KPT IQ K IPLVL+  D+   AQTG+GKTASFVLP+L
Sbjct: 1   MSFFKLKLSDQINKSLTENRYIKPTEIQEKVIPLVLEHKDIIAKAQTGSGKTASFVLPIL 60

Query: 61  TILEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG--IPFEAQNK 117
            +  K         R L+L PTRELA QVA  F  + K  N    ++          Q  
Sbjct: 61  NLWYKQNYEGKPKIRCLVLTPTRELALQVATAFLTFSKYMNKKPKVVSVIGGESIGEQLL 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +++G DV++ T GR+LD   + ++ ++N++  V+DEAD+MLD GF   ++ +  ++P  
Sbjct: 121 NIQKGCDVIVATTGRLLDILKKKQMDLSNLDFFVLDEADKMLDFGFEEELELLLEVLPKK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT   ++  ++    +NP  I   +  +   T++           +  + L +
Sbjct: 181 RQNLLFSATYPTKMLNIASKITENPIEI---SIENEEATVQSINQRVIEVNKENRSALLR 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++  +  ++F   K++  NL     K GF   + HG++ Q  R + L  FK   I+
Sbjct: 238 HLIKEENWQQVLVFMANKRSCDNLAFKFRKYGFEAESFHGDLIQEERNETLEGFKAKKIK 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ A+D+AARGL I ++  V N+D+P    +YIHRIGRTGRAG+ G A + ++ ED +H 
Sbjct: 298 VLFATDIAARGLHIENISCVVNYDLPRATADYIHRIGRTGRAGKSGIAVSFISHEDKEHF 357

Query: 358 DAIEK 362
             IEK
Sbjct: 358 ALIEK 362


>gi|194871760|ref|XP_001972900.1| GG15782 [Drosophila erecta]
 gi|190654683|gb|EDV51926.1| GG15782 [Drosophila erecta]
          Length = 592

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 124/468 (26%), Positives = 215/468 (45%), Gaps = 20/468 (4%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
            D  + P++   +L   + +PTPIQ++ +P++LQ   +   A TG+GKT +F+ P++  L
Sbjct: 121 KDFKMLPRLQLNLLSRNFDRPTPIQMQALPVLLQGRALMACAPTGSGKTLAFLTPIINGL 180

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNKKLE 120
                R    R L+L PTRELA Q+     +  +   L    +              K  
Sbjct: 181 RA--HRTSGLRALVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECKQR 238

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----ITSLVPF 176
               V      R L       L ++++E  V+DEADR+++ G   + +       +    
Sbjct: 239 YDILVSTPNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAACSHP 298

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T+    FSAT T  + K +   L+N  RI +   +S  ET++   +   ++  K  A+  
Sbjct: 299 TKCVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGKLVAMRD 358

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            + Q        ++F   K+    L   L   G +V  IH    Q  R   +  F+EG+I
Sbjct: 359 LVRQGLQPP--VLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVRAFREGSI 416

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++ ++L  RG+D   V  V N+D P    +YIHRIGRTGRAGR G+A T   ++D  +
Sbjct: 417 WVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQDDTSN 476

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN-HARKNNPIPQKSTGFDRRKKNYSS 415
           + +I  +I+       G +      ++K+  ++    A+K       ST      K+  S
Sbjct: 477 LRSIALIIKNS----GGSVPEYMLQMKKVRKSEARMRAKKPLDREDISTKIRPETKSDKS 532

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFR---GNMPAFMLPKNRGK 460
            KS   L + E+I KL ++ + ++ DS+  +    N+ + + P ++ K
Sbjct: 533 HKS-AKLNKVERIEKLLKNRKGHEKDSMSRQKKLSNIKSDLKPADKRK 579


>gi|115532548|ref|NP_001040789.1| hypothetical protein H20J04.4 [Caenorhabditis elegans]
 gi|82654504|gb|ABB88208.1| Hypothetical protein H20J04.4b [Caenorhabditis elegans]
          Length = 561

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 128/450 (28%), Positives = 219/450 (48%), Gaps = 17/450 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ LG+   +   +        TP+Q   IP +L+  D+ G A+TGTGKT +F +P+L 
Sbjct: 90  KFSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPILQ 149

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L            LIL PTRELA Q+A+ F   GK   L  ++++GG     Q ++L  
Sbjct: 150 KLSV---DPYGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQARELSE 206

Query: 122 GADVLICTPGRILDHFNRGKLL----MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              V++ TPGR+ D               I+  V+DEADRML+  +   ++ I   +   
Sbjct: 207 RPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESISEK 266

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKKCAL 234
           RQTLL SAT+T+ +  +     + P   E    +  S+     +   V   A        
Sbjct: 267 RQTLLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDRLEQKYVVCPVAVKDAYLVY 326

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + +    ++   + +IF    +    L +  E  GF V ++H  I Q+ R+  LS F+  
Sbjct: 327 VVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRSK 386

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           T+Q+++ +D+A+RGLDIP V  V N +VP   + YIHR+GR+ RAGR G A + V + D+
Sbjct: 387 TLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDV 446

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK-NNPIPQKSTGFDRRKK-- 411
           + + A+E++I KK+D L      +   + ++ +A+     K  N    +    +RRK+  
Sbjct: 447 ELLQAVEQVIGKKLDELKVSPKHVTKYVTQVLVAKKEAELKLENQKFGEKKEINRRKELL 506

Query: 412 ----NYSSQKSHIPLKESEKISKLQQDIQE 437
               +      H+    + +++  ++ +++
Sbjct: 507 MSGMDEDEADRHLEEMRTRRMTNSKRKLEK 536


>gi|326571018|gb|EGE21042.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis BC7]
          Length = 391

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 204/373 (54%), Gaps = 9/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F DL LS  ++ AV    + + TPIQ + +P  L   D  G AQTGTGKTA+F++ +  
Sbjct: 8   NFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITIIE 67

Query: 60  ----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                         +  PR L+L PTRELA Q+  +  +  +   L    + GG  F+ Q
Sbjct: 68  SLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCHELTRFSQLYNLCITGGSDFDKQ 127

Query: 116 NKK-LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
            ++  +R  D+LI TPGRI+D  N+G+L ++ +E+ V+DEADRMLDMGFIP I+ I   +
Sbjct: 128 LEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIVRHM 187

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P   +      + T   Q V     +   +      +  ++T +      Y    ++   
Sbjct: 188 PSNTERQSLLFSAT-FNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREKTS 246

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             + + + D++K  IIF N+K  V  L     ++   V  + G++ Q+ R + L  FK+G
Sbjct: 247 ALKQILADDSVKKTIIFANRKDQVKRLYD-YLRRHHKVTMLSGDVAQQKRERYLQRFKDG 305

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+A RG+ + DV HV N+ +P+  ++Y+HRIGRTGRAG  G + + V++ D 
Sbjct: 306 EVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVSENDA 365

Query: 355 KHIDAIEKLIEKK 367
            ++ A+E+ I++K
Sbjct: 366 FNLPALERHIDQK 378


>gi|260771800|ref|ZP_05880718.1| ATP-dependent RNA helicase SrmB [Vibrio metschnikovii CIP 69.14]
 gi|260613092|gb|EEX38293.1| ATP-dependent RNA helicase SrmB [Vibrio metschnikovii CIP 69.14]
          Length = 411

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 122/358 (34%), Positives = 193/358 (53%), Gaps = 5/358 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
           A+ + G+ +PT +Q + IP  L   D+   A TGTGKTA+FV+P L  L+    +   P 
Sbjct: 17  AIKELGFERPTQVQEEAIPHALDGRDILASAPTGTGKTAAFVIPALQYLQDFPRKKPGPA 76

Query: 75  TL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
            + IL PTRELA Q+ +   +  K+  L +  + GG+ ++     L    D+++ TPGR+
Sbjct: 77  RMLILTPTRELAMQITEQARQLAKHTRLNIFTITGGVQYQEHADILATTQDIVVATPGRL 136

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT-MTDELQ 192
           L++ N  +     IE L++DEADRMLDMGF P +  + +   + +QTLLFSAT     ++
Sbjct: 137 LEYINAERFDCRAIEWLILDEADRMLDMGFGPVVDRLAAECRWRKQTLLFSATLEGRGVE 196

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
             + + L NP  I    P    + I   +    +   K        +      +  I+F 
Sbjct: 197 GFTADLLNNPAEITAEPPRRERKKIAQWYHRADSMKHKLE---LLKVILTQQAERSIVFI 253

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             ++ +  L   LE+       I G + Q  R   +S F+EG I +++A+D+AARG+DIP
Sbjct: 254 KTRERLAELRGELERAQIPCAWIQGEMPQDRRNNAISRFREGDINILLATDVAARGIDIP 313

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           DV HV NFD+P  A+ Y+HRIGRT RAG+ G A +LV   D   +D + + +++++  
Sbjct: 314 DVSHVINFDMPRSADVYLHRIGRTARAGKKGNAISLVEAHDQMMMDRVARYVKEEIKE 371


>gi|255548421|ref|XP_002515267.1| hypothetical protein RCOM_1346600 [Ricinus communis]
 gi|223545747|gb|EEF47251.1| hypothetical protein RCOM_1346600 [Ricinus communis]
          Length = 791

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 143/409 (34%), Positives = 229/409 (55%), Gaps = 13/409 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D   S +++ A++  GY KPT IQ + +P+VL   D+ GIA+TG+GKTA+FVLPM+ 
Sbjct: 225 SFEDCSFSMQLMNAIVKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIV 284

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       +   P  +I  PTRELA Q+    +K+ K++ + V+ + GG+    Q K+L
Sbjct: 285 HIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFSKSHGIRVSAVYGGMSKLEQFKEL 344

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D+++ TPGR++D      L M+    LV+DEADRM D+GF P I++I   +   RQ
Sbjct: 345 KAGCDIVVATPGRLIDLLKMKALNMSKATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 404

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  +++K++   L +P R+ V       E I        +   K   L ++L 
Sbjct: 405 TLLFSATMPRKVEKLAREILSDPIRVTVGEVGMANEDITQVVQVIPSDAEKLPWLFEKLP 464

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     ++F ++K  V  +   L ++GF V A+HG+ DQ SRM+IL  FK G   ++
Sbjct: 465 GMIDDGD-VLVFASKKATVDEIESQLAQKGFKVAALHGDKDQASRMEILQKFKSGVYHVL 523

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIKHID 358
           +A+D+AARGLDI  +  V NFD+    + ++HRIGRTGRAG + G A+TL+ +++ +   
Sbjct: 524 IATDVAARGLDIKSLKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLITQKEARFAG 583

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
            +   +      ++G+L         +D+A  +   ++    +K  G  
Sbjct: 584 ELVNSLIAAGQNVSGEL---------MDLAMKDGRFRSKRDARKGAGKK 623


>gi|91788228|ref|YP_549180.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
 gi|91697453|gb|ABE44282.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
          Length = 422

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 143/426 (33%), Positives = 212/426 (49%), Gaps = 13/426 (3%)

Query: 1   MDFADLGLSPKVV----CAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFV 56
           M F+ LG SP ++     A+ D GY  PT IQ + IP +L   DV G AQTG+GKTA+F 
Sbjct: 1   MPFSSLGFSPALLPAFLRAIGDKGYRAPTAIQSQAIPAILLGRDVVGSAQTGSGKTAAFA 60

Query: 57  LPMLTILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLT--VALLIGGIPFE 113
           LPML  L         P    IL PTRELAAQV +    + K       VA++ GG+   
Sbjct: 61  LPMLQQLANAPTGTPRPTRGLILVPTRELAAQVGEAIAGFAKYLPQRVKVAVVFGGVSIN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  GAD+++ TPGR+LD      L ++ +  LV+DEADR+LD+GF   +  I  L
Sbjct: 121 PQMMNLRGGADIVVATPGRLLDLLEHNALKISEVSTLVLDEADRLLDLGFGEELGRILEL 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ L FSAT    ++ ++E+ L +P RI      +  ET            + +  
Sbjct: 181 LPPRRQNLFFSATFPPAIEVLAESMLHDPLRI---EVQAVPETKPDIAQRAIQVDASRRT 237

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L + L   +  +  ++F   K     +   L K        HG + Q  R ++L +F+ 
Sbjct: 238 QLLRHLVQTEKWERALVFVATKHAAEIVADKLRKVHIEAEPFHGELSQGKRTQVLQDFRI 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             +Q++VA+D+AARG+DI  +  V N+D+P  A +Y HRIGRTGRAG  G A + V+   
Sbjct: 298 KAVQVVVATDVAARGIDIAQMPVVVNYDLPRSAVDYTHRIGRTGRAGESGLAVSFVSAGT 357

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
             H   IEK    KV     +      PLE +     + A       ++ +  D+ ++  
Sbjct: 358 EAHFKLIEKRQGIKVQREQVEGFE---PLETLAPNAADPASTGGIKGKRPSKKDKLREAA 414

Query: 414 SSQKSH 419
           +  ++ 
Sbjct: 415 ARAQTQ 420


>gi|225441549|ref|XP_002281113.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 622

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 136/390 (34%), Positives = 203/390 (52%), Gaps = 15/390 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA++ L   +   +    YVKPTP+Q   IP+ L   D+   AQTG+GKTA+F  P+++
Sbjct: 164 TFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLSGKDLMACAQTGSGKTAAFCFPIIS 223

Query: 62  ILEKGRA-------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +  G+        R   P  LIL PTREL+ Q+ D   K+     + V +  GG P   
Sbjct: 224 GIMTGQFAQRPRGARTVYPLALILSPTRELSCQIHDEARKFSYQTGVKVVVAYGGAPINQ 283

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++LERG D+L+ TPGR++D   R ++ +  I  L +DEADRMLDMGF P I+ I   +
Sbjct: 284 QLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQM 343

Query: 175 PFTRQ----TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                    T+LFSAT   E+Q+++ +FL +   + V    S+ + I       +    +
Sbjct: 344 DMPPPGVRQTMLFSATFPKEIQRLASDFLSSYIFLAVGRVGSSTDLIVQRVEFVHESDKR 403

Query: 231 KCALLQQLLQS----QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              +     Q            ++F   KK   +L H L   GF    IHG+  Q+ R  
Sbjct: 404 SHLMDLLHAQRANGAHGKQSLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQEREH 463

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G A 
Sbjct: 464 ALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLAT 523

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
               + +      +  L+++    +   L+
Sbjct: 524 AFFNENNSSLARPLADLMQEANQEVPAWLT 553


>gi|74207549|dbj|BAE40025.1| unnamed protein product [Mus musculus]
          Length = 622

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 127/389 (32%), Positives = 194/389 (49%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G + PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 182 SFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEAD M+DMGF   I+ I
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADSMIDMGFEGDIRTI 361

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 362 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKE 417

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 538 KACDESVLMDLKALLLEAKQKVPPVLQVL 566


>gi|16803490|ref|NP_464975.1| hypothetical protein lmo1450 [Listeria monocytogenes EGD-e]
 gi|47095401|ref|ZP_00233011.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes str.
           1/2a F6854]
 gi|217964403|ref|YP_002350081.1| dead/deah box ATP dependent helicase [Listeria monocytogenes HCC23]
 gi|224499698|ref|ZP_03668047.1| dead/deah box ATP dependent helicase [Listeria monocytogenes
           Finland 1988]
 gi|224501609|ref|ZP_03669916.1| dead/deah box ATP dependent helicase [Listeria monocytogenes FSL
           R2-561]
 gi|226224051|ref|YP_002758158.1| ATP-dependent RNA helicase, DEAD-box family (deaD) [Listeria
           monocytogenes Clip81459]
 gi|254827738|ref|ZP_05232425.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|254829791|ref|ZP_05234446.1| ATP-dependent RNA helicase, DEAD-box family (deaD) [Listeria
           monocytogenes 10403S]
 gi|254898384|ref|ZP_05258308.1| ATP-dependent RNA helicase, DEAD-box family (deaD) [Listeria
           monocytogenes J0161]
 gi|254912124|ref|ZP_05262136.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936452|ref|ZP_05268149.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|284801837|ref|YP_003413702.1| hypothetical protein LM5578_1592 [Listeria monocytogenes 08-5578]
 gi|284994979|ref|YP_003416747.1| hypothetical protein LM5923_1544 [Listeria monocytogenes 08-5923]
 gi|290894213|ref|ZP_06557182.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|16410879|emb|CAC99528.1| lmo1450 [Listeria monocytogenes EGD-e]
 gi|47016222|gb|EAL07145.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes str.
           1/2a F6854]
 gi|217333673|gb|ACK39467.1| dead/deah box ATP dependent helicase [Listeria monocytogenes HCC23]
 gi|225876513|emb|CAS05222.1| Putative ATP-dependent RNA helicase, DEAD-box family (deaD)
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|258600117|gb|EEW13442.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258609044|gb|EEW21652.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|284057399|gb|ADB68340.1| hypothetical protein LM5578_1592 [Listeria monocytogenes 08-5578]
 gi|284060446|gb|ADB71385.1| hypothetical protein LM5923_1544 [Listeria monocytogenes 08-5923]
 gi|290556210|gb|EFD89755.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|293590095|gb|EFF98429.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|307571032|emb|CAR84211.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes L99]
          Length = 435

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 136/429 (31%), Positives = 221/429 (51%), Gaps = 15/429 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G  P +  A+   G+ +PT +Q K IP +L+   + G +QTGTGKT +F+LP++  
Sbjct: 7   FDQFGFQPFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINN 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKLE 120
           +   +  V+     I  P+RELA Q+ +   K  K     +A+   IGG   +    KL+
Sbjct: 67  VNPEKDAVQAV---ITAPSRELATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++  + LVIDEAD  LDMGF+  + +I   +P   Q 
Sbjct: 124 KQPQIIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQM 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+  +L+     +++NP+   +    + ++T+EH      A  S+    L + + 
Sbjct: 184 LVFSATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEH---RIMATRSRNKLDLLKNVL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F N K     + + L ++G  V  IHG+++ R R + +   +    Q +V
Sbjct: 241 VGSQPYLAIVFTNTKTTADEVANGLIERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI  + HV N+++P+  + YIHR GRTGRAG  G A TL    D   ++ +
Sbjct: 301 ATDLAARGIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQL 360

Query: 361 EKL-IE-KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK-STGFDRRKKNYSSQK 417
           EK+ IE K VDW N +  +L    E  +      A++    P++       ++K   + K
Sbjct: 361 EKMGIEFKHVDWKNKEFVTL----EDRNRRAKREAKRETADPREIGMRKKAKQKGKPNYK 416

Query: 418 SHIPLKESE 426
             I  K +E
Sbjct: 417 KKINYKMNE 425


>gi|167533121|ref|XP_001748241.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773361|gb|EDQ87002.1| predicted protein [Monosiga brevicollis MX1]
          Length = 473

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 110/417 (26%), Positives = 183/417 (43%), Gaps = 17/417 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL LS  ++    +  + +PT +Q   +P +L   DV   A+TG+GKTA+F LP+L
Sbjct: 1   MSFEDLKLSSWLIRQCRNLNFTRPTAVQQACVPAILNDEDVYAAAKTGSGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L      V      +L PTRELA Q++D F+  GK   + VA ++GGI    Q  +L 
Sbjct: 61  EQLSHDPYGVYAV---VLTPTRELAFQISDQFQSLGKPIGVRVATIVGGIDSIKQAVELS 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   +++ TPGR+  H                         G +  I +           
Sbjct: 118 RRPHIIVATPGRLAVHTLVLDE--------ADRLMTNETLQGHLDVILDALPEERQNLLF 169

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
                           +             + T     + F+  + ++     +L+QL  
Sbjct: 170 SATLLEEPSGKISQQLHRDLFRYSEIKEEATVTTLRQRYVFLPAHMRFPYLIHILRQLHD 229

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++      +   +    + L         +       + Q++R+  L  FK   I +++
Sbjct: 230 DKNNSIVLFVPTCRLCEELALTLRELDLRCTALHSQARMSQKARLDALHKFKSSFIHILL 289

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V +V N++VP   E+Y+HR+GRT RAGR G A TL+ + DI+ + AI
Sbjct: 290 ATDVASRGLDIPTVTYVINYNVPRAPEDYVHRVGRTARAGRGGMAITLMDERDIELLQAI 349

Query: 361 EKLIEKKVDWL-NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           E+ I  K+    +     +   + KI+IA     R+   +    +GFD R +   ++
Sbjct: 350 EEHINVKLTAYDDIKDEEIVQSMNKINIA-----RRAAELQLLESGFDERLQARKAK 401


>gi|331217930|ref|XP_003321643.1| ATP-dependent RNA helicase HAS1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309300633|gb|EFP77224.1| ATP-dependent RNA helicase HAS1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 646

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 114/380 (30%), Positives = 198/380 (52%), Gaps = 4/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ L LSP    A+ D G+ K T +Q +TIP ++   DV G A+TG+GKT +F++P + 
Sbjct: 109 EFSSLDLSPPTAKAIQDMGFTKMTEVQARTIPPLMTGRDVLGAARTGSGKTLAFLIPAVE 168

Query: 62  ILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L + + + R    T+I+ PTRELA Q+    ++  K+++ T A++IGG   +A+ +KL 
Sbjct: 169 MLSRLQFKPRNGTGTIIVSPTRELALQIFGVAQELMKHHSQTFAIVIGGANRKAEAEKLV 228

Query: 121 RGAD-VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS-LVPFTR 178
           +G + ++      +    N    + +N++ LV+DEADR+L++GF   ++ I S L    R
Sbjct: 229 KGVNLLISTPGRLLDHLQNTKGFVFSNLKALVVDEADRILEIGFEDEMRQIISLLPSENR 288

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q++LFSAT T ++Q ++   L+               T++          S K  LL   
Sbjct: 289 QSMLFSATQTTKVQDLARISLRPGPLYINVDADKQEATVQGLEQGYVVCDSDKRFLLLFT 348

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   K  I+F +   +V      L      V  +HG   Q+ R      F   T  +
Sbjct: 349 FLKKSLKKKVIVFFSSCNSVKYHAELLNYIDIPVLDLHGKQKQQKRTNTFFEFCNATTGI 408

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT RAG+ G++   +   ++  + 
Sbjct: 409 LLCTDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVGRTARAGKSGRSLLFLLPSELGFLR 468

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + K+ +  ++  +  +  L
Sbjct: 469 FL-KMAKVPLNEYSFPMDKL 487


>gi|302815317|ref|XP_002989340.1| hypothetical protein SELMODRAFT_41331 [Selaginella moellendorffii]
 gi|300142918|gb|EFJ09614.1| hypothetical protein SELMODRAFT_41331 [Selaginella moellendorffii]
          Length = 653

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 133/362 (36%), Positives = 201/362 (55%), Gaps = 4/362 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL   ++ A+   GY  PTPIQ + +P+VL   D+ GIA+TG+GKTA+FVLPM+ 
Sbjct: 184 QFKELGLDSLLMGAITKQGYENPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIV 243

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       +   P  +I  PTRELA Q+ +   K+ K Y + V+ + GG+    Q K+L
Sbjct: 244 HIMDQEELGKGEGPIGVICAPTRELAQQIFNESRKFAKPYGIRVSGVFGGMSKLDQFKEL 303

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++++ TPGR++D      L M     LV+DEADRM D+GF P I++I   +   RQ
Sbjct: 304 KAGCEIVVATPGRLIDMLKMKALTMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 363

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   ++ ++   L  P R+         E +            K    +   L
Sbjct: 364 TLLFSATMPRRVETLAREVLSAPVRVTAGEVGRANEDVTQVAQIVATDADK-LQWMLSKL 422

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + ++F + K  V  L   L+  GF V A+HG+ DQ SR+ +L  FK G   ++
Sbjct: 423 PQMVDAGDVLVFASTKVRVEELEKHLQDSGFKVAALHGDKDQASRVDVLQGFKSGQFHVL 482

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIKHID 358
           VA+D+AARGLDI  +  V N+D     + ++HR+GRTGRAG + G A+TLVA+++ +   
Sbjct: 483 VATDVAARGLDIKSIKTVVNYDTAKDMDTHVHRVGRTGRAGDKEGVAYTLVAQKEARFAG 542

Query: 359 AI 360
            +
Sbjct: 543 DL 544


>gi|271969585|ref|YP_003343781.1| hypothetical protein Sros_8393 [Streptosporangium roseum DSM 43021]
 gi|270512760|gb|ACZ91038.1| hypothetical protein Sros_8393 [Streptosporangium roseum DSM 43021]
          Length = 697

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 137/363 (37%), Positives = 206/363 (56%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++P++  A+   G + P PIQ   +PL L   D+ G A+TGTGKT +F + ML 
Sbjct: 40  TFRDLGVTPEIADALETEGIITPFPIQEMALPLALNGQDIIGQARTGTGKTYAFGVAMLQ 99

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + K R   + PR L++ PTRELA QV ++           +  + GG  +E Q + L++
Sbjct: 100 RVGKPRKNRKKPRGLVVVPTRELAVQVTEDLVTAAGKLGSRILTVYGGRAYEPQVEALKQ 159

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR+LD   +  L +  I++LV+DEADRMLD+GF+P I+ I  L+P  RQT+
Sbjct: 160 GVDVIVGTPGRLLDLVKQKHLDLGQIDVLVLDEADRMLDLGFLPDIERIIKLIPEKRQTM 219

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  E+  +S  +L  P  +      + AE         +  +      +   L  
Sbjct: 220 LFSATLPGEIVALSRRYLTRPTHVRAENNDAEAEATPQTTQFVWRAHRMDKIEIVGRLLQ 279

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D     +IFC  K+    +   L+++GF+  A+HG++ Q  R + L  F+ G I ++VA
Sbjct: 280 CDGRGLTMIFCETKRACDMVVEQLKERGFAAAAVHGDLGQGQREQALRAFRNGKIDVLVA 339

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV HV N+D P   + Y+HRIGRTGRAG+ G A T V  ED+     I 
Sbjct: 340 TDVAARGIDVDDVTHVVNYDCPQDEKAYVHRIGRTGRAGKTGVAVTFVEWEDLTRWKVIN 399

Query: 362 KLI 364
             +
Sbjct: 400 NAL 402


>gi|194763631|ref|XP_001963936.1| GF20995 [Drosophila ananassae]
 gi|190618861|gb|EDV34385.1| GF20995 [Drosophila ananassae]
          Length = 996

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 123/376 (32%), Positives = 198/376 (52%), Gaps = 11/376 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L   V+  +   G+ KPT IQ +  P+ L   D+ GIAQTG+GKT +++LP + 
Sbjct: 246 NFEECSLPAHVIDEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIV 305

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNK 117
            +       R   P  L+L PTRELA Q+      YG           + GG     Q +
Sbjct: 306 HIGNQPPILRGEGPVALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQAR 365

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LERG +V+I TPGR++D        +     LV+DEADRMLDMGF P I+ I   +   
Sbjct: 366 DLERGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 425

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ- 236
           RQ +++SAT   E+Q ++ +FL +  +I + + S +A       V    +  K   +++ 
Sbjct: 426 RQVVMWSATWPKEVQALAGDFLNDYIQINIGSMSLSANHNIRQIVEICTEMEKPQRMVRL 485

Query: 237 ------QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
                     + +     IIF   K  V ++   +  +G++  +IHG+  Q  R  +L +
Sbjct: 486 LKEIAPTTNNAANNGNKIIIFVETKIKVEDILQIIRTEGYTATSIHGDKTQNERDSVLKD 545

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   +++A+D+A+RGLD+ D+ +V N+D PN +ENY+HRIGRTGR  + G A+T   
Sbjct: 546 FRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFT 605

Query: 351 KEDIKHIDAIEKLIEK 366
            ++ K    +  ++E+
Sbjct: 606 PDNAKQARELISVLEE 621


>gi|258627528|ref|ZP_05722305.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM603]
 gi|258580110|gb|EEW05082.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM603]
          Length = 398

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 148/403 (36%), Positives = 226/403 (56%), Gaps = 7/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +   V   GY  PT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSQLGLSDVLTQTVARLGYQTPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YGK+  L    + GG+  +AQ ++L
Sbjct: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  + +P  I +    ++   I    +                 
Sbjct: 181 FLLFSATLSRKVRELAKTAVNDPYEISIAANQASKSNISQWLITVDKDTKSALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 238 INEQQWDQALIFIETKHGAAKLVTQLEKRGIQAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRADAVGEAISFVSKDNFKNLCM 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           IE  +   ++     +     P + + I+  N+  K+  + Q+
Sbjct: 358 IESRLGHLIER---RVVEGFEPKKTVPISILNYVPKHKRVQQE 397


>gi|226490952|ref|NP_001152536.1| ATP-dependent RNA helicase DDX23 [Zea mays]
 gi|195657271|gb|ACG48103.1| ATP-dependent RNA helicase DDX23 [Zea mays]
 gi|224030151|gb|ACN34151.1| unknown [Zea mays]
          Length = 758

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 132/424 (31%), Positives = 216/424 (50%), Gaps = 32/424 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +++  L  +++ A+  AGY KP+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPML+
Sbjct: 338 KWSESKLGTELLRAIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLS 397

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + +            P  +++ PTRELA Q+ +   K+     + V  ++GG   E Q 
Sbjct: 398 YITRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQG 457

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY---------- 166
            K+ +G +++I TPGR+LD   R   ++N    +V+DEADRM+DMGF P           
Sbjct: 458 FKIRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 517

Query: 167 -------IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
                             R T +FSATM   +++++  +L+NP  + + T     +  + 
Sbjct: 518 SNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGT---AGKATDL 574

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                      +     Q + +    K  I+FCN KK        L+K GF V  +HG  
Sbjct: 575 ITQNVIMVKESEKMPRLQKILTDLGDKTAIVFCNTKKTADMRAKDLDKSGFRVTTLHGGK 634

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q  R   L  F+     ++VA+D+A RG+DIPDV HV N+++P+  + Y HRIGRTGRA
Sbjct: 635 SQDQREISLDGFRNRRFNVLVATDVAGRGIDIPDVAHVINYEMPSSVDTYTHRIGRTGRA 694

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           G+ G A + +  E+      +++++ +         S + P L + + ++       +  
Sbjct: 695 GKKGVATSFLTLENTDIFFDLKQMLIQS-------NSPVPPELARHEASKFKPGSIPDRP 747

Query: 400 PQKS 403
           P+++
Sbjct: 748 PRRN 751


>gi|194365407|ref|YP_002028017.1| ATP-dependent RNA helicase DbpA [Stenotrophomonas maltophilia
           R551-3]
 gi|194348211|gb|ACF51334.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 458

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 122/402 (30%), Positives = 197/402 (49%), Gaps = 8/402 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ L LSP +   +   GY   TP+Q +++P +L   DV   A TG+GKTA+F L +L 
Sbjct: 3   DFSTLPLSPALQPGLDALGYTTLTPVQAQSLPAILDGRDVIAQAPTGSGKTAAFGLGLLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    RV+                        G      + L+ G             
Sbjct: 63  AIDPSLIRVQALVLC-PTRELADQVGKQIRKLATGIPNLKLLLLVGGVPLGPQLASLEGH 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+ +   +  L +  +  LV+DEADRMLDMGF   I+ I       RQ+L
Sbjct: 122 DPHVVVGTPGRVQELARKRALNLGAVRTLVLDEADRMLDMGFEEPIREIAGRTHKDRQSL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D ++ ++ + L+    + V                  A   K  A L      
Sbjct: 182 LFSATFPDSIRAMARDLLREAVEVTVEGADQAPAIRHMFCEVEPAHRQKALAGLLL---- 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T ++ ++FCN +K+V  + +SL++ GFS  A+HG+++QR R ++L      +  ++VA
Sbjct: 238 KYTPESAVVFCNTRKDVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRSCNVLVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLD+ ++  V N+++P   E+Y HR+GRTGRAG  G A +LVA  +    +AIE
Sbjct: 298 SDVAARGLDVEELAAVINYELPTDVESYQHRVGRTGRAGASGLAISLVAGREKTRAEAIE 357

Query: 362 KLIEKKVDWLNGDLSSLNP---PLEKIDIAQHNHARKNNPIP 400
             + + +DW    L++  P   P   +   + +  + +   P
Sbjct: 358 AQMGQPLDWQKTPLATSRPAELPQAAMRTLRIDGGKTDKLRP 399


>gi|148652579|ref|YP_001279672.1| DEAD/DEAH box helicase domain-containing protein [Psychrobacter sp.
           PRwf-1]
 gi|148571663|gb|ABQ93722.1| DEAD/DEAH box helicase domain protein [Psychrobacter sp. PRwf-1]
          Length = 383

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 115/373 (30%), Positives = 191/373 (51%), Gaps = 9/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           + FADL LS  ++ +V D G+ + T IQ + +P  L   D  G AQTGTGKTA+F++ + 
Sbjct: 5   ITFADLSLSDSILRSVNDLGFTELTGIQAQILPHTLAGQDAIGQAQTGTGKTATFLITII 64

Query: 60  -----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                    +     +  PR LIL PTRELA Q+ D+     K+ +L    ++GGI ++ 
Sbjct: 65  EALLKRPFADDEMRYIGEPRALILAPTRELANQIYDDAIALTKHTSLHSVCVMGGIDYDK 124

Query: 115 QNKK-LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           Q     +   D+LI TPGR++D   +G + ++ IE  V+DEADRMLDMGFIP I+ +   
Sbjct: 125 QIAALDKSYTDILIATPGRLIDLIYKGHVFLDRIEAFVLDEADRMLDMGFIPDIKRLMRY 184

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P          + T    +   N         V                 +   ++   
Sbjct: 185 MPPNTDRQSLLFSAT--FNQDVMNLAYQWLMNPVFVEIEPEHKTSDLVEQHFYLLTEADK 242

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
               +          +I    +K+ V   ++      +V  + G++DQ  R + L  FK 
Sbjct: 243 HQALIQILAQPETKKVIVFANRKDQVKRLYTKLSADHNVVMLSGDVDQAKRERYLDKFKN 302

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G  +++VA+D+A RG+ + D+ HV N+ +P++ ++Y+HRIGRTGRAG+ G + + V+++D
Sbjct: 303 GNAKVLVATDVAGRGIHVDDISHVVNYTLPDQPDDYVHRIGRTGRAGQKGISISFVSEDD 362

Query: 354 IKHIDAIEKLIEK 366
             ++ AIE  +++
Sbjct: 363 AFNLPAIEAHLDR 375


>gi|229495897|ref|ZP_04389623.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           endodontalis ATCC 35406]
 gi|229317210|gb|EEN83117.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           endodontalis ATCC 35406]
          Length = 587

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 132/371 (35%), Positives = 209/371 (56%), Gaps = 8/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           M F +L LS  ++ AV   G+ +  P+Q   IP +L+ + D+  +AQTGTGKTA++ LP+
Sbjct: 1   MTFDELKLSAPLLDAVSALGFTEAMPVQAAVIPYLLEDNIDLIALAQTGTGKTAAYGLPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKK 118
           L  L   R     P+ L+L PTREL  Q+A + E + K       L + G    E Q + 
Sbjct: 61  LEKLRPQR---DFPQALVLSPTRELCLQIASDLESFAKFLPEVHVLAVYGGSSIETQIRS 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RG D+++ TPGR+LD   R  + +  I  +V+DEAD ML+MGF   ++ I S +P  R
Sbjct: 118 LKRGVDIVVATPGRLLDLMRRRAISLERIHTVVLDEADEMLNMGFSEDLKAILSEIPEER 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             LLFSATM+ E+  ++ ++L +PK I +   +   E   +     Y   +++  L  + 
Sbjct: 178 NLLLFSATMSREIATIAHSYLHDPKEITIGRKN---EANSNIRHIYYLVPARQRYLALKR 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +        GI+FC  +     +   L   G++  A+HG++ Q  R +++  F  G +QL
Sbjct: 235 IVDFFPSIYGIVFCRTRVETKEIAEHLIADGYNADALHGDLSQEQRDRVMQRFCSGHLQL 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ ++ HV ++ +P+  ENY HR GRT RAG+ G +  L    +   I 
Sbjct: 295 LVATDVAARGLDVDNLTHVIHYGLPDDVENYTHRSGRTARAGKTGLSIALCHLREKSRIR 354

Query: 359 AIEKLIEKKVD 369
           +IEKLI  K++
Sbjct: 355 SIEKLIGAKME 365


>gi|37676305|ref|NP_936701.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus YJ016]
 gi|37200846|dbj|BAC96671.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 459

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 138/380 (36%), Positives = 220/380 (57%), Gaps = 9/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P+++  +   GY + TPIQ +++PLVL   DV G  +TG+GKTA+F L +L+ 
Sbjct: 5   FNTLSLKPELLSTLDSLGYTEMTPIQAQSLPLVLDGKDVIGQGKTGSGKTATFALGLLSN 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA       +  +    L +  G+P   Q   LE 
Sbjct: 65  LNVSRFRVQ---SLVLCPTRELADQVATEIRTLARGIHNIKVLTLCGGMPMGPQILSLEH 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH ++G++ +  +  LV+DEADRML+MGF   I  I    P  RQTL
Sbjct: 122 GAHILVGTPGRILDHLSKGRIDLAELNTLVLDEADRMLEMGFQDAIDAIIDAAPTQRQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  ++++ ++   +QNP+ ++V +   T +           + +++     + L  
Sbjct: 182 LFSATFPEQIETIASKVMQNPEMVKVES---THQKSTIEQRFYQLESTEERDNALEALLL 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ ++FCN KK V N+   L  + FSV  +HG+++QR R + L+ F   +I ++VA
Sbjct: 239 THRPESTVVFCNTKKEVQNVTDELNHRRFSVIELHGDMEQRERERALTMFANKSISILVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  V NF++    E ++HRIGRTGRAG  G A +  +++++  ++ IE
Sbjct: 299 TDVAARGLDVDNLDAVINFELSRDPEVHVHRIGRTGRAGAKGIAISFFSEKELYRVERIE 358

Query: 362 KLIEKKVDWLNGDLSSLNPP 381
           + +   +D     L     P
Sbjct: 359 EYMG--IDVHPAKLPQPENP 376


>gi|195054323|ref|XP_001994075.1| GH22875 [Drosophila grimshawi]
 gi|193895945|gb|EDV94811.1| GH22875 [Drosophila grimshawi]
          Length = 799

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 135/397 (34%), Positives = 205/397 (51%), Gaps = 20/397 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L+  +   V  A Y KPTP+Q   IP+++   D+   AQTG+GKTA+F++P+L 
Sbjct: 294 SFDDVQLTEIIRNNVNLARYDKPTPVQKYAIPIIISGRDLMACAQTGSGKTAAFLVPILN 353

Query: 62  ILEKG------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            + +               R + P  L+L PTRELA Q+ +  +K+     +  A+L GG
Sbjct: 354 QMYEHGLSAPPQNNRQYSRRKQFPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGG 413

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q ++L+RG  +++ TPGR+ D   RGK+ + NI  LV+DEADRMLDMGF P I+ 
Sbjct: 414 NNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRR 473

Query: 170 ITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I   +           +FSAT   ++Q+++ +FL N   + V    ST+E I    +  Y
Sbjct: 474 IVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTLLWVY 533

Query: 226 AQYSKKCALLQ----QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
            Q  +   L      +           +IF   KK   +L   L +    V +IHG+  Q
Sbjct: 534 DQDKRSYLLDLLSSIRDGPEYSKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQ 593

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           + R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P   E Y+HRIGRTGR G 
Sbjct: 594 KEREEALRCFRSGDCPILVATAVAARGLDIPHVTHVINFDLPTDVEEYVHRIGRTGRMGN 653

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            G A +    ++      + +L+ +    + G L  +
Sbjct: 654 LGVATSFFNDKNRNICSDLLELLIETKQEIPGFLEEM 690


>gi|261210866|ref|ZP_05925156.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
 gi|260839841|gb|EEX66441.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
          Length = 435

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 149/403 (36%), Positives = 225/403 (55%), Gaps = 7/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +   V   GY  PT IQ + IP++LQ  DV   AQTGTGKTASFVLP+L
Sbjct: 38  MPFSQLGLSDVLTHTVAQLGYQTPTQIQTQAIPVILQGRDVIAAAQTGTGKTASFVLPIL 97

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YGK   L    + GG+  +AQ ++L
Sbjct: 98  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKATGLKGLAVFGGVDEQAQKQRL 157

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 158 IEGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPNEVQ 217

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  + +P  I +    ++   I    +                 
Sbjct: 218 FLLFSATLSRKVRELAKTAVNDPYEITIAANQASKSNISQWLITVDKDTKSALLSHL--- 274

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 275 ITEQQWDQALIFIETKHGAAKLVTQLEKRGIQAEAFHSGRSQAIRAQLLEDFKAGKIKYL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 335 VATGVAARGIDIEQLSRVVNYDLPFPADEYVHRIGRTGRADAVGEAISFVSKDNFKNLCM 394

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           IE  +   ++     +     P + + I+  N+  K+  + Q+
Sbjct: 395 IESRLGHLIER---RVVEGFEPKKPVPISILNYVPKHKRVTQE 434


>gi|224368898|ref|YP_002603060.1| RhlE1 [Desulfobacterium autotrophicum HRM2]
 gi|223691615|gb|ACN14898.1| RhlE1 [Desulfobacterium autotrophicum HRM2]
          Length = 427

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 146/366 (39%), Positives = 215/366 (58%), Gaps = 4/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F+ LGLS  +V AV   GY  P+PIQ++ IP VL+  DV   AQTGTGKT  F LP +
Sbjct: 20  MTFSTLGLSAPIVKAVAGQGYETPSPIQVRAIPAVLKGRDVMAAAQTGTGKTLVFTLPVL 79

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +    +    R L+L PTRELA Q+ ++   +G++ +L    + GG+    Q  KL
Sbjct: 80  ERLSKLAPVQANQVRALVLVPTRELAVQIGESVTTFGRHLHLRSTAVFGGVKINPQMMKL 139

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR+LD  ++  +  + +E+LV+DEADRML+MGFI  I  I +L+P  RQ
Sbjct: 140 RGGVDVLVATPGRLLDLHSKNAVKFDRLEVLVLDEADRMLNMGFIHDIGKIIALLPNQRQ 199

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT  DE++ ++   L +P  I V  P+S  + I+                     
Sbjct: 200 TLMFSATFPDEIRDLARGLLHDPVEISVAPPNSVLKIIKQWVYPVDQNKKSALLSKL--- 256

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  ++F   K     L   LEK+G    AIHG+  Q +R K L NFK+GT++++
Sbjct: 257 ICDNQWEQVLVFSKTKNGADRLVRHLEKEGIDAAAIHGDKSQGARTKALENFKKGTVRIL 316

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NFD+P+  E+Y+H +GRTGRAG  G+  +LV  ++ + +  
Sbjct: 317 VATDIAARGLDIYQLPQVVNFDLPHVKEDYVHLMGRTGRAGAPGQVISLVCADEFQQLSD 376

Query: 360 IEKLIE 365
           IE+LI+
Sbjct: 377 IERLIK 382


>gi|195581486|ref|XP_002080565.1| GD10546 [Drosophila simulans]
 gi|194192574|gb|EDX06150.1| GD10546 [Drosophila simulans]
          Length = 782

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 146/454 (32%), Positives = 236/454 (51%), Gaps = 14/454 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F  + LS  ++ A+   GY  PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP + 
Sbjct: 158 SFYQMNLSRPLMRAIGVLGYTYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLE 217

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L +      + R L+L PTREL AQV    ++  +  ++ V L IGG+  +AQ   L 
Sbjct: 218 RLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLR 277

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  D++I TPGR++DH         ++IE+L++DEADRMLD  F   ++ I +    TRQ
Sbjct: 278 QNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQ 337

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM+++++ ++   L  P ++ VN     A  +   F+            +   L
Sbjct: 338 TMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASL 397

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + ++F   KK    L   L   G     +HGN+ Q+ R++ L  FKE  I ++
Sbjct: 398 ICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVL 457

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  
Sbjct: 458 IATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKD 517

Query: 360 IEKLIEKK----------VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           I K  E            ++     L+SL P ++ I + +    R+     Q+ +  +R+
Sbjct: 518 IIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNI-LDEEQAERQLAKTEQQLSKTERK 576

Query: 410 KKNYSSQKS-HIPLKESEKISKLQQDIQENDADS 442
               ++++      K+  +  K +  +   D D 
Sbjct: 577 LLGQTNERRGWFQTKQQREAEKDRLALTTGDEDK 610


>gi|195332387|ref|XP_002032880.1| GM21012 [Drosophila sechellia]
 gi|194124850|gb|EDW46893.1| GM21012 [Drosophila sechellia]
          Length = 782

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 146/454 (32%), Positives = 236/454 (51%), Gaps = 14/454 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F  + LS  ++ A+   GY  PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP + 
Sbjct: 158 SFYQMNLSRPLMRAIGVLGYTYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLE 217

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L +      + R L+L PTREL AQV    ++  +  ++ V L IGG+  +AQ   L 
Sbjct: 218 RLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLR 277

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  D++I TPGR++DH         ++IE+L++DEADRMLD  F   ++ I +    TRQ
Sbjct: 278 QNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQ 337

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM+++++ ++   L  P ++ VN     A  +   F+            +   L
Sbjct: 338 TMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASL 397

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + ++F   KK    L   L   G     +HGN+ Q+ R++ L  FKE  I ++
Sbjct: 398 ICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVL 457

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  
Sbjct: 458 IATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKD 517

Query: 360 IEKLIEKK----------VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           I K  E            ++     L+SL P ++ I + +    R+     Q+ +  +R+
Sbjct: 518 IIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNI-LDEEQAERQLAKTEQQLSKTERK 576

Query: 410 KKNYSSQKS-HIPLKESEKISKLQQDIQENDADS 442
               ++++      K+  +  K +  +   D D 
Sbjct: 577 LLGQTNERRGWFQTKQQREAEKDRLALTTGDEDK 610


>gi|46907678|ref|YP_014067.1| ATP-dependent RNA helicase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47092740|ref|ZP_00230526.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes str.
           4b H7858]
 gi|254824491|ref|ZP_05229492.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254932635|ref|ZP_05265994.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|254993205|ref|ZP_05275395.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes FSL
           J2-064]
 gi|255522510|ref|ZP_05389747.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes FSL
           J1-175]
 gi|300765593|ref|ZP_07075572.1| ATP-dependent RNA helicase [Listeria monocytogenes FSL N1-017]
 gi|46880946|gb|AAT04244.1| putative ATP-dependent RNA helicase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47018928|gb|EAL09675.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes str.
           4b H7858]
 gi|293584194|gb|EFF96226.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293593729|gb|EFG01490.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|300513694|gb|EFK40762.1| ATP-dependent RNA helicase [Listeria monocytogenes FSL N1-017]
 gi|328465494|gb|EGF36723.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes 1816]
 gi|328474965|gb|EGF45759.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes 220]
 gi|332311891|gb|EGJ24986.1| ATP-dependent RNA helicase [Listeria monocytogenes str. Scott A]
          Length = 435

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 136/429 (31%), Positives = 221/429 (51%), Gaps = 15/429 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G  P +  A+   G+ +PT +Q K IP +L+   + G +QTGTGKT +F+LP++  
Sbjct: 7   FDQFGFQPFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINN 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKLE 120
           +   +  V+     I  P+RELA Q+ +   K  K     +A+   IGG   +    KL+
Sbjct: 67  VNPEKEAVQAV---ITAPSRELATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++  + LVIDEAD  LDMGF+  + +I   +P   Q 
Sbjct: 124 KQPQIIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQM 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+  +L+     +++NP+   +    + ++T+EH      A  S+    L + + 
Sbjct: 184 LVFSATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEH---RIMATRSRNKLDLLKNVL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F N K     + + L ++G  V  IHG+++ R R + +   +    Q +V
Sbjct: 241 VGSQPYLAIVFTNTKTTADEVANGLIERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI  + HV N+++P+  + YIHR GRTGRAG  G A TL    D   ++ +
Sbjct: 301 ATDLAARGIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQL 360

Query: 361 EKL-IE-KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK-STGFDRRKKNYSSQK 417
           EK+ IE K VDW N +  +L    E  +      A++    P++       ++K   + K
Sbjct: 361 EKMGIEFKHVDWKNKEFVTL----EDRNRRAKREAKRETADPREIGMRKKAKQKGKPNYK 416

Query: 418 SHIPLKESE 426
             I  K +E
Sbjct: 417 KKINYKMNE 425


>gi|261251316|ref|ZP_05943890.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
 gi|260938189|gb|EEX94177.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
          Length = 396

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 151/402 (37%), Positives = 224/402 (55%), Gaps = 7/402 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +  A+ + GY KPT IQ K IP++L   D+   AQTGTGKTASFVLP+L
Sbjct: 1   MPFSKLGLSQPITTAISELGYDKPTNIQNKAIPVILDGEDLIAAAQTGTGKTASFVLPIL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G   R +  R LIL PTRELA QV    ++YGK+ NLT   + GG+  + Q + L
Sbjct: 61  EKLSQGETQRKKRIRALILAPTRELAIQVEQKVQEYGKHLNLTSLAMYGGVDEQPQKQAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD + +  +    +EILV+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 121 IEGVDILVATPGRLLDMYAKRAVYFEEVEILVLDEADRMLDMGFIEDINKILDRLPTDIQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++++++ +++  + NP  I +    ++ + IE   +                 
Sbjct: 181 NLLFSATLSNKVRDLAKTAVHNPYEISIAANQASKKNIEQWLITVDKDMKSALLSHL--- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++     +IF   K     L   LEK+G    A H    Q  R K+L +FK G I+ M
Sbjct: 238 IKENEWDQALIFIETKHGAAKLASQLEKRGIEAEAFHSGRSQAIRSKLLEDFKAGKIKYM 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+ + ARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 298 IATGVGARGIDIEGLSRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFKNLCM 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           IE  +   ++    +      P + + I+  N+  K+    Q
Sbjct: 358 IESRLGHLLERREVEGFE---PRKPVPISILNYVPKHKRTAQ 396


>gi|113969505|ref|YP_733298.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113884189|gb|ABI38241.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 409

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 169/413 (40%), Positives = 240/413 (58%), Gaps = 16/413 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L  ++V  + + GY +PTPIQI+ IP +L + DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFSALSLHSQLVNTLAELGYQQPTPIQIEAIPAILAKQDVMAGAQTGTGKTAAFALPVL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L         P+ +   +L PTRELA QV  +F KY K  ++ + +  GG+  EAQ  
Sbjct: 61  QQLLLDNQSQDAPKDIRALVLVPTRELAVQVQQSFGKYAKGTDIRIGIAYGGVSIEAQQA 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           + + G DVLI TPGR+LDH  +G L + ++ +LV DEADRMLDMGF+  I+ +   VP  
Sbjct: 121 EFKAGIDVLIATPGRLLDHLRQGALNLKHLSVLVFDEADRMLDMGFMDEIKAVLKQVPAQ 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT+ D +   S+N L+ PK IEV   ++TA  +       YA  S +      
Sbjct: 181 RQTLLFSATLDDSIFGFSKNLLREPKLIEVAKRNTTAAQV---EQRVYAIDSDRKTEFVS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L      +  +IF   K+ V  L   L + G +  A HG++ Q +R K+L +FK+G +Q
Sbjct: 238 HLVRSKNWQQVLIFSRTKQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLVQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI D+ +V NF++P  AE+YIHRIGRTGRAG  G A TL ++ED   +
Sbjct: 298 VLVATDVAARGLDIADLQYVINFELPFIAEDYIHRIGRTGRAGSTGLAITLFSQEDALLL 357

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           + +E L++K++   W  G     N              R+N+   QK     R
Sbjct: 358 EEVEALLDKRLPQQWYPGFEPDFNK--------MEPEPRRNSKAAQKQRAKKR 402


>gi|223944961|gb|ACN26564.1| unknown [Zea mays]
          Length = 734

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 133/424 (31%), Positives = 217/424 (51%), Gaps = 32/424 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +++  L  +++ A+  AGY KP+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPML+
Sbjct: 314 KWSESKLGTELLRAIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLS 373

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + +            P  +++ PTRELA Q+ +   K+     L V  ++GG   E Q 
Sbjct: 374 YITRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGLKVVSIVGGQSIEEQG 433

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY---------- 166
            K+ +G +++I TPGR+LD   R   ++N    +V+DEADRM+DMGF P           
Sbjct: 434 FKIRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 493

Query: 167 -------IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
                             R T +FSATM   +++++  +L+NP  + + T     +  + 
Sbjct: 494 SNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGT---AGKATDL 550

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                      +     Q + +    K  I+FCN KK        L+K GF V  +HG  
Sbjct: 551 ITQNVIMVKESEKMPRLQKILTDLGDKTAIVFCNTKKTADMRAKDLDKAGFRVTTLHGGK 610

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q  R   L  F+     ++VA+D+A RG+DIPDV HV N+++P+  + Y HRIGRTGRA
Sbjct: 611 SQDQREISLDGFRNRRFNVLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGRA 670

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           G+ G A + +  E+      +++++      +  + S + P L + + ++       +  
Sbjct: 671 GKKGVASSFLTYENTDIFFDLKQML------MQSN-SPVPPELARHEASKFKPGSIPDRP 723

Query: 400 PQKS 403
           P+++
Sbjct: 724 PRRN 727


>gi|149191663|ref|ZP_01869906.1| ATP-dependent RNA helicase DbpA [Vibrio shilonii AK1]
 gi|148834504|gb|EDL51498.1| ATP-dependent RNA helicase DbpA [Vibrio shilonii AK1]
          Length = 460

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 140/405 (34%), Positives = 224/405 (55%), Gaps = 11/405 (2%)

Query: 1   MD---FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           M+   F+ L L  +++  +   GY   TPIQ + +P +L   DV G  +TG+GKTA+F L
Sbjct: 1   MNTPAFSTLNLPSELLGTLDSLGYASMTPIQAEALPKILAGKDVIGQGKTGSGKTAAFSL 60

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQN 116
            +L+ L   R RV+    L+L PTRELA QVA       +  +    L + G +P   Q 
Sbjct: 61  GVLSNLRVKRFRVQS---LVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQI 117

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             LE GA +L+ TPGRILDH  +G++ ++ +  LV+DEADRMLDMGF   +  I    P 
Sbjct: 118 GSLEHGAHILVGTPGRILDHLEKGRINLSELNTLVLDEADRMLDMGFKDALDAIIDQAPK 177

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT  +++Q ++   ++ P+ ++V +    +   +  +     +         
Sbjct: 178 ERQTLLFSATFPEQIQTIAARVMKQPEVVKVESKHDHSSIKQFFYQTNTLEERDNA---L 234

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + L      ++ ++FCN KK V N+   L  +GFSV  IHG+++QR R + L  F   ++
Sbjct: 235 ENLLLTHQPESAVVFCNTKKEVQNVADELHHRGFSVIDIHGDLEQRDRDQALVQFANKSV 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+ ++  VFN+D+    E ++HRIGRTGRAG  G AF+  ++++   
Sbjct: 295 SILVATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGNKGLAFSFYSEKEFYR 354

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLE-KIDIAQHNHARKNNPIP 400
           +  I++ ++  ++       S N P + K+   Q    +K    P
Sbjct: 355 VARIDEYMDMPIEPSELPAKSSNQPFQAKMVTIQIQGGKKQKLRP 399


>gi|242033243|ref|XP_002464016.1| hypothetical protein SORBIDRAFT_01g010590 [Sorghum bicolor]
 gi|241917870|gb|EER91014.1| hypothetical protein SORBIDRAFT_01g010590 [Sorghum bicolor]
          Length = 750

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 132/424 (31%), Positives = 216/424 (50%), Gaps = 32/424 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +++  L  +++ A+  AGY KP+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPML+
Sbjct: 330 KWSESKLGTELLRAIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLS 389

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + +            P  +++ PTRELA Q+ +   K+     + V  ++GG   E Q 
Sbjct: 390 YITRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQG 449

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY---------- 166
            K+ +G +++I TPGR+LD   R   ++N    +V+DEADRM+DMGF P           
Sbjct: 450 FKIRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 509

Query: 167 -------IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
                             R T +FSATM   +++++  +L+NP  + + T     +  + 
Sbjct: 510 SNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGT---AGKATDL 566

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                      +     Q + +    K  I+FCN KK        L+K GF V  +HG  
Sbjct: 567 ITQNVIMVKESEKMPRLQKILTDLGDKTAIVFCNTKKTADMRAKDLDKAGFRVTTLHGGK 626

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q  R   L  F+     ++VA+D+A RG+DIPDV HV N+++P+  + Y HRIGRTGRA
Sbjct: 627 SQDQREISLDGFRNRRFNVLVATDVAGRGIDIPDVAHVINYEMPSSVDTYTHRIGRTGRA 686

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           G+ G A + +  E+      +++++ +         S + P L + + ++       +  
Sbjct: 687 GKKGVATSFLTLENTDIFFDLKQMLIQS-------NSPVPPELARHEASKFKPGSIPDRP 739

Query: 400 PQKS 403
           P+++
Sbjct: 740 PRRN 743


>gi|254252033|ref|ZP_04945351.1| hypothetical protein BDAG_01244 [Burkholderia dolosa AUO158]
 gi|124894642|gb|EAY68522.1| hypothetical protein BDAG_01244 [Burkholderia dolosa AUO158]
          Length = 523

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 146/406 (35%), Positives = 221/406 (54%), Gaps = 28/406 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 47  TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 106

Query: 62  ILEK-----------------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
              +                           V  P  L+L PTRELA QV      YGK+
Sbjct: 107 RFAQLQKAHAQQPRAPREAGQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 166

Query: 99  YNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
                   ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 167 LKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 226

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I+ I +  P +RQT+LFSAT+  ++  ++   L++P+RIE+     +   I
Sbjct: 227 MLDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANI 286

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                    +  K        L     +   IIF   K +   L   L   GF   A+HG
Sbjct: 287 AQTVHYVDDRDHKDRL--LDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFESAALHG 344

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 345 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 404

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381
           RAGR G A +LV   +   +  IE+ +     V+ + G      PP
Sbjct: 405 RAGRSGIAVSLVHHAEQGALKRIERFVRAPLPVNVIEGFEPRKAPP 450


>gi|318056099|gb|ADV36250.1| Vasa [Gadus morhua]
          Length = 644

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 202/386 (52%), Gaps = 13/386 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L 
Sbjct: 209 TFKEACLCESLERNVAKSGYVKPTPVQKHGIPIIAAGRDIMACAQTGSGKTAAFLLPILQ 268

Query: 62  ILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            L          +  + P  +I+ PTREL  Q+     K+     +   +L GGI    Q
Sbjct: 269 KLMADGVAASSFSEQQEPEAIIVAPTRELINQIFLEARKFAHGTCVRPVVLYGGISTGHQ 328

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----IT 171
            + L RG +VL  TPGR++D   RGK+ +  +  LV+DEADRMLDMGF P ++       
Sbjct: 329 IRDLLRGCNVLCGTPGRLMDMIGRGKVGLTKLRYLVMDEADRMLDMGFEPEMRRLVGSPG 388

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTL+FSAT  +++Q+++ +FL+             A +     +    ++SK+
Sbjct: 389 MPSKEERQTLMFSATYPEDIQRMAGDFLKKDYLFLAVGVVGGACSDVEQKLVQVTKFSKR 448

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                  +      +  ++F   K+    +   L ++  +  +IHG+ +QR R + L +F
Sbjct: 449 D--QLLDILKNTGTERTMVFVETKRQADFIAAFLCRENVATTSIHGDREQREREQALGDF 506

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G   ++VA+ +AARGLDI DV HV NFD+PN  ++Y+HRIGRTGR G  G+A +    
Sbjct: 507 RSGKCPVLVATSVAARGLDIKDVQHVVNFDLPNNIDDYVHRIGRTGRCGNTGQAVSFYDP 566

Query: 352 E-DIKHIDAIEKLIEKKVDWLNGDLS 376
           E D +   ++ K++      +   L 
Sbjct: 567 EQDNQLARSLVKILCSAQQEVPSWLE 592


>gi|189205421|ref|XP_001939045.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187975138|gb|EDU41764.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 690

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 136/428 (31%), Positives = 221/428 (51%), Gaps = 32/428 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + GL  +++  V   GY +PTPIQ   IP+ LQ  D+ G+A+TG+GKTA+F+LP+L 
Sbjct: 270 NWQEAGLPDQLMRIVDQVGYTEPTPIQRAAIPIALQCRDLIGVAKTGSGKTAAFLLPLLA 329

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + +        R   P  LIL PTRELA Q+ +   K+        A+L+GG   E Q+
Sbjct: 330 YISQLPPLDAINRHDGPYALILAPTRELAQQIEEEARKFATPLGFRTAVLVGGHSIEEQS 389

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT----- 171
            ++  GA+++I TPGR+ D   R  L+++    +++DEADRM+DMGF   +  I      
Sbjct: 390 FQMRDGAEIIIATPGRLNDCIERRVLVLSQCTYVIMDEADRMIDMGFEEPVNKILAALPV 449

Query: 172 ---------------SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
                                RQT++++ATM   L+++++ + + P  + +       +T
Sbjct: 450 NNEKPDTEEAEDADAMKRGLYRQTMMYTATMPPALERIAKQYSRRPAIVTIGNLGEATDT 509

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
           +    V       K+   LQ++L S +     I+F N K+N   +   ++  GFS   +H
Sbjct: 510 V-EQRVEFIQGEEKRKKRLQEILTSGEFAPPIIVFVNIKRNCDAIARDIKHMGFSSATMH 568

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G+  Q  R   L+  K G   ++VA+DLA RG+DIPDV  V NF++P+  E Y HRIGRT
Sbjct: 569 GSKTQEQREAALAALKSGQTNVLVATDLAGRGIDIPDVSLVVNFNMPSSIEAYTHRIGRT 628

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
           GR  + G A T    ED   +  +++++ K       +LS +   L K + AQ    ++ 
Sbjct: 629 GRQDKKGTAITFWGNEDADVLYDLKQILTK------SNLSKVPEDLRKHEAAQQKGKKRG 682

Query: 397 NPIPQKST 404
             + +  T
Sbjct: 683 EVMGKNIT 690


>gi|88800218|ref|ZP_01115786.1| ATP-dependent RNA helicase [Reinekea sp. MED297]
 gi|88777064|gb|EAR08271.1| ATP-dependent RNA helicase [Reinekea sp. MED297]
          Length = 534

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 136/371 (36%), Positives = 207/371 (55%), Gaps = 5/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L   ++ A+ + GY   +PIQ  T+P  L  HD  G AQTGTGKTA+F++  +T 
Sbjct: 29  FHDLFLPIALMRAIQEVGYEYCSPIQAMTLPYALAGHDCIGKAQTGTGKTAAFLITAITD 88

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK- 118
                     V  PR LIL PTRELA Q+A++ +   K   L VA ++GG+ F+ Q ++ 
Sbjct: 89  LLEHRLEEQYVGEPRALILAPTRELALQIAEDAKALTKYSRLKVAAVVGGMDFDKQKQQL 148

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            E+  D+L+ TPGR++D  NR  + ++ IE+L+IDEADRMLDMGFIP I+ I    P T 
Sbjct: 149 HEQRTDILVATPGRLIDFMNRKAVFLDQIEMLIIDEADRMLDMGFIPDIKTIVRATPRTE 208

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
                  + T   Q +     +              +T E      Y   S++   + + 
Sbjct: 209 NRQTLLFSAT-FSQDILNLAQRWTNDPVRVEVEPKVKTAEDVEQHVYLVSSEEKYPVLRR 267

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  QD     ++F N++  V +L  +L+K G     + G++ Q  R++ L  FKEG  ++
Sbjct: 268 IVRQDEADRVMVFANRRDIVRDLAENLKKDGIPCQVLSGDVPQNKRIRTLDGFKEGKFEV 327

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A RG+ +  V HV NF +P   E+Y+HRIGRTGRAG+ G + +   ++D   I 
Sbjct: 328 LVATDVAGRGIHVDGVSHVINFTLPEDPEDYVHRIGRTGRAGKKGVSISFACEDDSFQIP 387

Query: 359 AIEKLIEKKVD 369
           AIE+ I++K+D
Sbjct: 388 AIEEYIKRKID 398


>gi|195128419|ref|XP_002008661.1| GI13618 [Drosophila mojavensis]
 gi|193920270|gb|EDW19137.1| GI13618 [Drosophila mojavensis]
          Length = 595

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 116/469 (24%), Positives = 206/469 (43%), Gaps = 31/469 (6%)

Query: 3   FADL-----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           F DL      L P+++  +   G+ +PTPIQ++ +P++L+   +   A TG+GKT +F+ 
Sbjct: 123 FDDLRTSEYKLLPRLLENLSSYGFAQPTPIQMQALPVLLKDRALMACAPTGSGKTLAFLT 182

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEA 114
           P++  L     +    R L+L PTRELA Q+     +  K   L    +           
Sbjct: 183 PIINGLRC--HKTTGLRALVLAPTRELAQQIYRECGELTKGTGLRTHFISKVSEAKQQYG 240

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
              K +    +      R L       L   +IE LV+DEADR+++ G   + +      
Sbjct: 241 PECKQKYDILISTPNRVRFLLQQQPPLLDFKSIEWLVLDEADRLMEEGQNNFKEQLDDIY 300

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +     ++   FSAT T  + K +   L+N  R+ +   +S  +T++   +   ++  K
Sbjct: 301 AACTNPQKRVAFFSATYTVPVAKWALRHLKNLVRVTIGVQNSATDTVKQELLFVGSESGK 360

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ +  +  Q      ++F   K+    L   L   G +V  IH    Q  R   +  
Sbjct: 361 LLAVRE--MVRQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERTQHQRDNCVRA 418

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG I +++ ++L  RG+D   V  V N+D P    +YIHRIGRTGRAGR G+A T   
Sbjct: 419 FREGHIWVLICTELMGRGIDFKGVNLVINYDFPPSKISYIHRIGRTGRAGRPGRAVTFFT 478

Query: 351 KEDIKHIDAIEKLIE-------------KKVDWLNGDLSSLNPPLEKIDIAQHNHARK-N 396
           ++D  ++ +I ++I+             KKV      + S   PL++ DI          
Sbjct: 479 QDDTANLRSIAQIIKNSGGEVPEYMLQMKKVSKSEAKMRS-KKPLDREDITTKIRPETPK 537

Query: 397 NPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGF 445
           N +  +      +            + +++K+ K+++ ++     + G 
Sbjct: 538 NSVKLQKIDKAEKVLKRKGNTDKNSINKAKKLGKMKEQLKGKAPLAKGK 586


>gi|73620772|sp|Q91VN6|DDX41_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX41; AltName:
           Full=DEAD box protein 41
 gi|15030112|gb|AAH11308.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Mus musculus]
          Length = 622

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 195/389 (50%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G + PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 182 SFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 361

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 362 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKE 417

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 538 KACDESVLMDLKALLLEAKQKVPPGLQVL 566


>gi|114564377|ref|YP_751891.1| ATP-dependent RNA helicase DbpA [Shewanella frigidimarina NCIMB
           400]
 gi|114335670|gb|ABI73052.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 467

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 143/408 (35%), Positives = 229/408 (56%), Gaps = 12/408 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P+++  +   G+   T IQ +++P +L   DV G A TG+GKTA+F L +L  
Sbjct: 13  FTSLKLKPELLENLQTMGFESMTQIQAESLPPILAGEDVIGQAMTGSGKTAAFGLGLLNK 72

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+  R R++   T++L PTRELA QVA +     +  +    L +  G+P   Q   LE 
Sbjct: 73  LDVKRFRIQ---TMVLCPTRELADQVAKDIRTLARGIHNVKVLTLCGGVPMGPQVGSLEH 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +R +L ++N+ +L++DEADRML+MGF  +I  I +  P  RQTL
Sbjct: 130 GAHIIVGTPGRIVDHLDRNRLDLSNMNMLILDEADRMLEMGFQQHIDQIIAAAPRERQTL 189

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D++Q +++       +  +    +  + +         + ++      +LL  
Sbjct: 190 LFSATFPDQIQAIADQI---LYKPVMVKVEAKHDNLTIDQHFYRIEDNQGRLEALRLLLL 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ ++FCN K+    +  SL + GFSV A+HG+++QR R ++L  F   + +++VA
Sbjct: 247 DKQPESAVVFCNTKRETQQVADSLHEFGFSVLALHGDLEQRDRDQMLLQFANRSARILVA 306

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++  VFN+ +    E +IHRIGRTGRAG  G A+T   +ED   +  IE
Sbjct: 307 TDVAARGLDIDELDAVFNYHIAYDTEVHIHRIGRTGRAGSSGAAYTFFGEEDGYKMAMIE 366

Query: 362 KLIEKKV--DWLNGDLSSLN--PPLEKIDIAQHNHARKNNPIPQKSTG 405
           + + K V  + L   +S+LN  P   ++   Q    +K    P    G
Sbjct: 367 EAMNKDVVSEPLPP-MSALNKQPLAAEMITIQIEAGKKQKIRPGDIVG 413


>gi|302900629|ref|XP_003048299.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256729232|gb|EEU42586.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 590

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 117/406 (28%), Positives = 202/406 (49%), Gaps = 5/406 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS K + A+ + G+ K T IQ + IP  L   DV G A+TG+GKT +F++P++ 
Sbjct: 115 SFEELKLSDKTMKAIKEMGFTKMTEIQRRGIPPSLAGRDVLGAAKTGSGKTLAFLIPVVE 174

Query: 62  ILEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + R    +I+  PTRELA Q+     +   +++ T  ++IGG    A+ +KL 
Sbjct: 175 MLSALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAEKLS 234

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G +++I TPGR+LDH      +  N++ LVIDEADR+L++GF   ++ I  ++P   + 
Sbjct: 235 KGVNLIIATPGRLLDHLQNTPFVFKNLKSLVIDEADRILEIGFEDEMRQIIKILPKEDRQ 294

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSAT T +++ ++   L+               T+E          + +  LL    
Sbjct: 295 TMLFSATQTTKVEDLARISLRPGPLYINVDEEKQFSTVEGLEQGYVICEADRRFLLLFSF 354

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  I+F +    V      L      V  +HG   Q+ R      F       +
Sbjct: 355 LKRNIKKKVIVFFSSCACVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGTL 414

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHID 358
           + +D+AARGLDIP V  +  FD P+   +YIHR+GRT R     G++   +   ++  + 
Sbjct: 415 ICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGSNSKGRSLMFLQPSEVGFLS 474

Query: 359 AIEKLIEKKVDW-LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
            ++      V++     + ++   LEK+ I+Q+ +  K+     +S
Sbjct: 475 HLKAARVPVVEFDFPKKIQNVQSQLEKL-ISQNYYLNKSAKDGYRS 519


>gi|126291595|ref|XP_001381058.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 649

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 127/389 (32%), Positives = 194/389 (49%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 209 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 268

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 269 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPPLRCALCIGGM 328

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 329 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 388

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 389 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKE 444

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 445 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 504

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F++G   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 505 FRDGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 564

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 565 KACDESVLMDLKALLLEAKQKVPPVLQVL 593


>gi|322384584|ref|ZP_08058264.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321150639|gb|EFX44116.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 418

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 114/425 (26%), Positives = 211/425 (49%), Gaps = 14/425 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L +    V  +   G  +PTPIQ + IP +L   DV   + TG+GKT ++VLP L
Sbjct: 3   LSFEQLHVDVSYVETLTRMGITEPTPIQEEAIPALLSGQDVIAQSATGSGKTLAYVLPAL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+    +I+ PTREL  Q+    +K  +  ++ +  LIGG     Q  KL+
Sbjct: 63  HNIDPDDKHVQ---VMIIVPTRELGMQIVQVAQKLTEGGSIRIQPLIGGASLSRQVDKLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRI +     KL ++ ++ +++DE D++ ++G +  +  +   +  ++Q 
Sbjct: 120 ERPHMVVGTPGRIKELIQMRKLTVHFVKTVIVDEVDQVFELGNMQEVGAVLKTMLKSKQV 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             FSATM   + + +E ++Q+P ++++       E              +    + + L 
Sbjct: 180 AFFSATMPPRILETAERWMQDPIKVQIKLKQPAHEH------LYVVCEERDKVDMLRRLV 233

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F N   ++  +   L+  G S+ A++G+  ++ R K++ +F+    QL++
Sbjct: 234 RHYNPRAAIVFINDTDDIGEVLAKLQYVGLSIAALYGDSGKQERAKVMQDFRNNKFQLLL 293

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV N D P  A++Y+HRIGRTGR GR G A ++V  +    ++  
Sbjct: 294 ATDVAARGLDIEGVSHVINLDPPLDADHYVHRIGRTGRMGRKGTAISIVTPKQTFIMEKF 353

Query: 361 EKLI----EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            + +     KKV    G++ +      +    Q N +++   + +     +R +K     
Sbjct: 354 SQSLHVQFHKKV-LYGGNILNPEELPARKKRLQTNSSQQTTKVKKTVKQRERDRKQKGKP 412

Query: 417 KSHIP 421
           K   P
Sbjct: 413 KRFRP 417


>gi|313633234|gb|EFS00103.1| probable ATP-dependent RNA helicase YqfR [Listeria seeligeri FSL
           N1-067]
 gi|313637832|gb|EFS03169.1| probable ATP-dependent RNA helicase YqfR [Listeria seeligeri FSL
           S4-171]
          Length = 435

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 136/429 (31%), Positives = 221/429 (51%), Gaps = 15/429 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G  P +  A+   G+ +PT +Q K IP +L+   + G +QTGTGKT +F+LP++  
Sbjct: 7   FDQFGFQPFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINN 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKLE 120
           +   +  V+     I  P+RELA Q+ +   K  K     +A+   IGG   +    KL+
Sbjct: 67  VNPEKDAVQAV---ITAPSRELATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++  + LVIDEAD  LDMGF+  + +I   +P   Q 
Sbjct: 124 KQPQIIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQM 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+  +L+     +++NP+   +    + ++T+EH      A  S+    L + + 
Sbjct: 184 LVFSATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEH---RIMATRSRDKLDLLKNVL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F N K     + + L ++G  V  IHG+++ R R + +   +    Q +V
Sbjct: 241 VGSQPYLAIVFTNTKTTADEVANGLTERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI  + HV N+++P+  + YIHR GRTGRAG  G A TL    D   ++ +
Sbjct: 301 ATDLAARGIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQL 360

Query: 361 EKL-IE-KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK-STGFDRRKKNYSSQK 417
           EK+ IE K VDW N +  +L    E  +      A++    P++       ++K   + K
Sbjct: 361 EKMGIEFKHVDWKNKEFVTL----EDRNRRAKREAKRETADPREIGMRKKAKQKGKPNYK 416

Query: 418 SHIPLKESE 426
             I  K +E
Sbjct: 417 KKINYKMNE 425


>gi|289434733|ref|YP_003464605.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170977|emb|CBH27519.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 447

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 136/429 (31%), Positives = 221/429 (51%), Gaps = 15/429 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G  P +  A+   G+ +PT +Q K IP +L+   + G +QTGTGKT +F+LP++  
Sbjct: 19  FDQFGFQPFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINN 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKLE 120
           +   +  V+     I  P+RELA Q+ +   K  K     +A+   IGG   +    KL+
Sbjct: 79  VNPEKDAVQAV---ITAPSRELATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLK 135

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++  + LVIDEAD  LDMGF+  + +I   +P   Q 
Sbjct: 136 KQPQIIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQM 195

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+  +L+     +++NP+   +    + ++T+EH      A  S+    L + + 
Sbjct: 196 LVFSATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEH---RIMATRSRDKLDLLKNVL 252

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F N K     + + L ++G  V  IHG+++ R R + +   +    Q +V
Sbjct: 253 VGSQPYLAIVFTNTKTTADEVANGLTERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVV 312

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI  + HV N+++P+  + YIHR GRTGRAG  G A TL    D   ++ +
Sbjct: 313 ATDLAARGIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQL 372

Query: 361 EKL-IE-KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK-STGFDRRKKNYSSQK 417
           EK+ IE K VDW N +  +L    E  +      A++    P++       ++K   + K
Sbjct: 373 EKMGIEFKHVDWKNKEFVTL----EDRNRRAKREAKRETADPREIGMRKKAKQKGKPNYK 428

Query: 418 SHIPLKESE 426
             I  K +E
Sbjct: 429 KKINYKMNE 437


>gi|152986227|ref|YP_001345953.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PA7]
 gi|150961385|gb|ABR83410.1| DEAD/DEAH box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Pseudomonas aeruginosa PA7]
          Length = 458

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 142/404 (35%), Positives = 215/404 (53%), Gaps = 16/404 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LS  ++  +   GY + TPIQ +++PL+LQ  D+   A+TG+GKTA+F L +L  
Sbjct: 6   FSSLPLSADLLANLDSLGYREMTPIQAQSLPLILQGRDLIAQAKTGSGKTAAFGLGLLAP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L     R    + L+L PTRELA QVA    +  +  +    L +  G+P+  Q   LE 
Sbjct: 66  L---NPRYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI +H  +G L+++ +  LV+DEADRMLDMGF   I  I   +P  RQTL
Sbjct: 123 GAHVVVGTPGRIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPERRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D ++K+++ F     R        +  T        +    K+       L  
Sbjct: 183 LFSATYPDGIEKLAKAF----MRDPQQVKVESLHTDSQIEQRFFEIDPKQRMDAVVRLLQ 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ + FC  ++    L  +L+    S  A+HG+++QR R ++L+ F   +  ++VA
Sbjct: 239 HFRPQSCVAFCQTRQQCQELADALKAHRISALALHGDLEQRERDQVLTVFANRSCTVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++    E +IHRIGR+GRAG  G A +LVA  +     AIE
Sbjct: 299 TDVAARGLDIAALETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIE 358

Query: 362 KLIEKKVDW-----LNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
            L ++ + W     L  +   L PP+  + IA     RK+   P
Sbjct: 359 DLQKQPLAWYALGQLKANPEPLLPPMSTLCIA---GGRKDKVRP 399


>gi|301122021|ref|XP_002908737.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262099499|gb|EEY57551.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 518

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 135/458 (29%), Positives = 212/458 (46%), Gaps = 47/458 (10%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LG+ P +V      G   PTP+Q   IP +L   DV G AQTG+GKTA+F LP+L
Sbjct: 52  ISFLNLGVDPWLVKRCELLGIRHPTPVQAHCIPPILAGRDVIGCAQTGSGKTAAFALPIL 111

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN-KKL 119
             L K       P  L+L PTRELA Q+AD F  +G +  +  A+++GG+    Q+    
Sbjct: 112 HTLSK---DPYGPYALVLTPTRELAFQIADQFNAFGSSMAVRCAVIVGGVDMLKQSLTLQ 168

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +R   ++                 ++ ++ +V+DEADR+LD+ F   +  I   +P  RQ
Sbjct: 169 QRPHIIVATPGRFRDHLLRADPPNISLVKYVVLDEADRLLDVSFAKDLSFIFDKLPTKRQ 228

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATMT  L ++ +  L +       TPS         F        K   L+  + 
Sbjct: 229 TLLFSATMTANLDRLEQTALSDDAFRFDATPSVKTVATLKQFYLFIPAQVKMTYLMYLMK 288

Query: 240 Q------------------------------------SQDTMKNGIIFCNQKKNVVNLCH 263
                                                S+  +++ +IF    K    +  
Sbjct: 289 MLDPNEEEEEESNRKVTKSRKGKKDQELEKLLEAATSSKRQLRSMMIFVATCKMCELVGE 348

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
              + G     +H  + Q  R+  L  FK G   +++++D+A+RGLDIP+V  V NFD+P
Sbjct: 349 IGNELGTKCVTLHSMLSQNRRLAALGKFKSGLSHILISTDVASRGLDIPEVDVVLNFDLP 408

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
             A++YIHR+GRT RAGR G+A +LV + DI+ +  IE  + KK+D    D      P +
Sbjct: 409 RDADDYIHRVGRTARAGRSGQAISLVTQHDIELLQNIEDKVGKKMDDYETD-----APEK 463

Query: 384 KIDIAQHNH--ARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           K+    ++   A +   +     GFD +     +++  
Sbjct: 464 KVLKLLNDVTTATRIAKMKLTERGFDDKVHARKTKRQE 501


>gi|154418331|ref|XP_001582184.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121916417|gb|EAY21198.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 640

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 197/379 (51%), Gaps = 3/379 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           +++ D GL   ++  +   G+ +PT IQ + IP +L   D+ G A TG+GKT +F++P +
Sbjct: 101 VNWTDCGLPAPLMSHLRLRGFKQPTSIQCQAIPCILSGRDIIGCAVTGSGKTLAFIIPCL 160

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L +L +          +IL PTRELA Q     +K     +   A L+GG   E Q + +
Sbjct: 161 LHVLAQPPTGQYEAAAVILSPTRELAYQTHIECQKIFSLMDKKSACLVGGNDIENQLRAI 220

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G++V+I TPGR +D  +     +  +  LVIDEADRM D+GF P +  I   +   RQ
Sbjct: 221 KNGSNVIIATPGRFIDLLSSSAFNIKKVSYLVIDEADRMFDLGFEPQVIRIAERMRKDRQ 280

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT    +++++   LQN   I V   +                   K   L ++L
Sbjct: 281 TLMFSATFPHTVERIARKLLQNSIEIVVGLRNVVTPN--INQSILVTNEDNKFNSLLKIL 338

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T    ++F N +    +L   L K G+SV  +HG++D   R  IL +F+EG   ++
Sbjct: 339 GDYTTQGQALVFTNTQDRAEDLFGKLNKSGYSVGLLHGSMDSPDRNSILHDFREGRFSVL 398

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V + + ARG+DI  +  V N+D P+   +Y+HR+GRTGRAG+ G AFT V  +D      
Sbjct: 399 VLTSVGARGIDIASIICVINYDAPDHEADYVHRVGRTGRAGKKGYAFTFVTDKDKTAAAG 458

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           I+  ++K    +  DL  L
Sbjct: 459 IKNAMKKSGCEIPKDLEDL 477


>gi|85113073|ref|XP_964459.1| hypothetical protein NCU02803 [Neurospora crassa OR74A]
 gi|74654326|sp|Q7SEL0|PRP28_NEUCR RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp-28
 gi|28926242|gb|EAA35223.1| hypothetical protein NCU02803 [Neurospora crassa OR74A]
          Length = 728

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 126/437 (28%), Positives = 204/437 (46%), Gaps = 36/437 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  L  +++  V + GY +PTPIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 294 SWEESTLPRRLLDIVKNVGYDEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLV 353

Query: 62  ILE-----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +          +   P  LIL PTREL  Q+    +K+      TV  ++GG   E Q 
Sbjct: 354 YISELPPLTEYNKNDGPYALILAPTRELVQQIESEAKKFATPLGFTVVSIVGGHSLEEQA 413

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GA++++ TPGR++D   R  L+ +     ++DEADRM+D GF   +  I   +P 
Sbjct: 414 FALRNGAEIIVATPGRLVDCLERRLLVFSQCCYTIMDEADRMIDQGFEEPLTKILDAMPV 473

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ--------- 227
           T +          +L     +     ++  + T +                         
Sbjct: 474 TNEKPDTDDAENPQLMSRYVDGKDRYRQTMMYTATMPPIVERIAKKYLRRPAIVTIGNAG 533

Query: 228 ---------------YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
                            K+   LQ++L S       I+F N K+N   +   ++  G+S 
Sbjct: 534 EAVDTVEQRVEFVSGEDKRKKRLQEILNSGQFKPPIIVFVNIKRNCDMVARDIKGMGYSA 593

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
             +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y HR
Sbjct: 594 VTLHGSKTQEQREAALASLRNGQTDILVATDLAGRGIDVPDVSLVVNFNMATNIESYTHR 653

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T +  ED   +  + ++I K        +S +   L + + AQ N 
Sbjct: 654 IGRTGRAGKSGVAITFLGPEDNDVLYDLRQIISK------SSISKVPDELRRHEAAQ-NK 706

Query: 393 ARKNNPIPQKSTGFDRR 409
            +K     ++S G+  +
Sbjct: 707 PQKGQKKLEESNGYSGK 723


>gi|308807515|ref|XP_003081068.1| DEAD-box protein abstrakt (ISS) [Ostreococcus tauri]
 gi|116059530|emb|CAL55237.1| DEAD-box protein abstrakt (ISS) [Ostreococcus tauri]
          Length = 1030

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 123/382 (32%), Positives = 201/382 (52%), Gaps = 7/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  GLS ++   +   G+ KP PIQ + +P+++   D  GIA+TG+GKT +++LPML 
Sbjct: 331 TWAHAGLSGRIHELIRRCGFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAYILPMLR 390

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  +I+ PTREL  Q+    ++YGK        + GG    AQ  +L
Sbjct: 391 HINAQEPLKNGDGPIGMIMGPTRELVTQIGKEAKRYGKALGFNAVSVYGGSGIAAQIGEL 450

Query: 120 ERGADVLICTPGRILDHFNR---GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA+++ CTPGR++D           +  +  +V+DEADRM DMGF P I  I + +  
Sbjct: 451 KRGAEIVACTPGRMIDILTTGGGKITNLRRVTYIVLDEADRMFDMGFEPQITRILANLRP 510

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L+NP  I++   S     I+            +   + 
Sbjct: 511 DRQTVMFSATFPHTMEALARAALENPVEIQIGGKSVVNSDIDQVV--EIRPEEDRFLRVL 568

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL         IIF   +    +    L K G+   ++HG+ +Q  R   +S+FK    
Sbjct: 569 ELLGEWCERGKIIIFVASQDKADSTFKELLKSGYPCLSLHGSKEQSDRHSTISDFKSDVC 628

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+ +AARGLD+ D+  V N+D PN  E+Y+HR+GRTGRAG+ G A T +++++ K 
Sbjct: 629 NILVATSVAARGLDVKDLRLVINYDTPNHLEDYVHRVGRTGRAGQKGTAVTFISEDEEKF 688

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
              + K ++     +  D+  L
Sbjct: 689 APDLVKALKDSKQTVPRDVQRL 710


>gi|297817166|ref|XP_002876466.1| hypothetical protein ARALYDRAFT_486301 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322304|gb|EFH52725.1| hypothetical protein ARALYDRAFT_486301 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 136/388 (35%), Positives = 209/388 (53%), Gaps = 13/388 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD+ L   +   +    YV+PTP+Q   IP++L + D+   AQTG+GKTA+F  P+++
Sbjct: 150 TFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLGQRDLMACAQTGSGKTAAFCFPIIS 209

Query: 62  ILEKGRA-------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            + K +        R   P  +IL PTRELA Q+ D  +K+     + V +  GG P   
Sbjct: 210 GIMKDQHVQRPRGSRTVYPLAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPINQ 269

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++LERG D+L+ TPGR+ D   R ++ M  I+ L +DEADRMLDMGF P I+ I   +
Sbjct: 270 QLRELERGVDILVATPGRLNDLLERARVSMQRIKFLALDEADRMLDMGFEPQIRKIVEQM 329

Query: 175 PFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                   QT+LFSAT   E+Q+++ +F+ N   + V    S+ + I            +
Sbjct: 330 DMPPRGERQTMLFSATFPREIQRLAADFMSNYIFLAVGRVGSSTDLITQRIEFVQESDKR 389

Query: 231 KCALLQQLLQSQDTMKNGI--IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
              +     Q +   K  +  +F   K+    L + L    F   +IHG+  Q+ R   L
Sbjct: 390 SHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVAL 449

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G A   
Sbjct: 450 RSFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAF 509

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
             + + +    + +L+++    +   L+
Sbjct: 510 FNENNAQMARLLAELMQEANQEVPEWLT 537


>gi|295397327|ref|ZP_06807419.1| ATP-dependent RNA helicase [Aerococcus viridans ATCC 11563]
 gi|294974401|gb|EFG50136.1| ATP-dependent RNA helicase [Aerococcus viridans ATCC 11563]
          Length = 450

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 126/436 (28%), Positives = 206/436 (47%), Gaps = 23/436 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    L P +  A+ D  + +P+PIQ   IP++    DV   +QTG+GKT +F+LP+L
Sbjct: 1   MSFTQFNLKPFINDALADLNFYEPSPIQATVIPVIQSGRDVIAQSQTGSGKTHAFLLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN---LTVALLIGGIPFEAQNK 117
             +          + +I  P+RELA Q+     +     +          G    +  N+
Sbjct: 61  NKITAE----NHTQLVITAPSRELAEQLYQAGRQILSFSDEDLHIERAFGGTDTVKQANR 116

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  V++ TPGR+LD  N   + ++ +   V+DEAD  LD+GF+  +  I   +P +
Sbjct: 117 LENAVPQVVVATPGRLLDLINNQLISVHQVTDFVVDEADMTLDLGFLNEVDQIAGRMPKS 176

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
               +FSAT+ D+L+     +L NP+ I +      ++TI++  V    +  K       
Sbjct: 177 LNMYVFSATIPDKLKPFLRKYLSNPEWITIEARHKISDTIDNYLVPVKGRDRKALLFDTL 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              +       +IF N K+ V  L   L+ QG +V  IHG++  R R +++   +    Q
Sbjct: 237 ---TIGQPYLALIFANTKETVQELYKYLKSQGLNVGQIHGDLPARERRRVMKQVQNLDFQ 293

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N++VPN  E +IHR+GRTGR G+ G A T    ++   +
Sbjct: 294 YVVATDLAARGIDIDGVSHVINYEVPNELEFFIHRVGRTGRQGKPGTAITFYIPDE---L 350

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG------FDRRKK 411
             IE L  K + + N D+       + ID   H+        P+           ++R+K
Sbjct: 351 KDIEWLENKGIIFENKDIKD----HQLIDGKDHDARAARQKAPEVDHTVVGMIERNKRRK 406

Query: 412 NYSSQKSHIPLKESEK 427
                K  +  + S+ 
Sbjct: 407 VKPGYKKKLSRQISKH 422


>gi|66826815|ref|XP_646762.1| hypothetical protein DDB_G0270396 [Dictyostelium discoideum AX4]
 gi|74897375|sp|Q55BR9|DDX49_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx49; AltName:
           Full=DEAD box protein 49
 gi|60474611|gb|EAL72548.1| hypothetical protein DDB_G0270396 [Dictyostelium discoideum AX4]
          Length = 508

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 111/416 (26%), Positives = 192/416 (46%), Gaps = 3/416 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL+  +V      G+  P+ IQ  TIP +L+  D+   A+TG+GKTASF +P+L 
Sbjct: 5   TFEELGLTTWLVANCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILN 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    V      IL PTRELA Q+ + F   G   N+  +++IGGI    Q   L++
Sbjct: 65  QLSEDPYGVFAV---ILTPTRELAVQIGEQFNAIGAPMNVNCSVVIGGIDNVTQALILDK 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+  H N G  +       ++ +    L                   +  
Sbjct: 122 RPHIIVATPGRLASHLNNGLKIALKFCKFLVLDEADRLLGEDFELEIASILEHLPPPEKR 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
                     + +++       +  +   +S  +T++          +         +  
Sbjct: 182 QTLLFSATMTKNLTKLDSIALNKPFIFEDNSKYDTVDTLKQEYIYMPAPTKDCYLVYILK 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + I+F N    V  +   L K      ++H  +DQ+SR+  L  FK G ++++VA
Sbjct: 242 KHEGSSAIVFVNNCYAVEAVKGMLNKLDIPSVSLHSFLDQKSRLAALKTFKSGKVKVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDIPDV  V N+ + N +++YIHR+GRT R GR G+A + +   D+  I  IE
Sbjct: 302 TDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFGRSGRAISFITPHDVSLIKGIE 361

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           ++I+K+++    D   +   L++   A+       + I       +RR +    QK
Sbjct: 362 EIIKKQLELYKTDDDEVFRHLKEASTARKIVEIHLDEIEFGVKQKERRTERNELQK 417


>gi|269104500|ref|ZP_06157196.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268161140|gb|EEZ39637.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 430

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 123/448 (27%), Positives = 200/448 (44%), Gaps = 24/448 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILEKGRARVRMPRTLI 77
             + + T IQ   IP+ +   D+   ++TG+GKT +F+LP M  +        R PR LI
Sbjct: 1   MAFDQATEIQRTAIPVAILGKDILASSKTGSGKTLAFLLPAMQRMYRSKPFTRRDPRVLI 60

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           L PTRELA QV    +          AL++GG  F  Q K L +    ++ TPGR+ DH 
Sbjct: 61  LTPTRELAKQVFAQLKPLNAGTPYDAALIVGGENFNDQVKALRKDPMFVVATPGRLADHL 120

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
                 ++ +E+L++DEADRMLD+GF   ++ I       R+  L  +   D  + V   
Sbjct: 121 EHRSTYLDGLEMLILDEADRMLDLGFEKELRRIHEAASHRRRQTLMFSATLDHPEVVEMA 180

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
                    ++   S  E  +                L   +   +     IIF   + +
Sbjct: 181 HEMLNAPKRISIGHSAEEHKDITQRFILCDNLTHKEALLNKILETEDYNQMIIFTATRAD 240

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
              L   L  +     A+ GN++Q  R  I+S F+    +++V +D+A+RGLDI +V HV
Sbjct: 241 TDRLTKELNDRKLKAVALSGNLNQTQRNSIMSQFERFCHKILVTTDIASRGLDISNVSHV 300

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
            NFD+P  AE Y+HR+GRTGRAG  G A + V  +D K    IE  +++ +++   D   
Sbjct: 301 INFDLPKHAEEYVHRVGRTGRAGNKGDAISFVGPKDWKSFKNIEAFLQQSIEFTAID--G 358

Query: 378 LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQE 437
           L    +   I Q                F+++    ++QK         + +K ++ I +
Sbjct: 359 LKAKFKGFKIEQKKK-------------FNKKPTEQNNQKKKT------QAAKPKRHIDK 399

Query: 438 NDADSLGFRGNMPAFMLPKNRGKLNDKL 465
              D+      +  FM  K    +  ++
Sbjct: 400 RFYDNQAVGHEV--FMPKKKPRNVAAEI 425


>gi|301119687|ref|XP_002907571.1| ATP-dependent RNA helicase DBP2, putative [Phytophthora infestans
           T30-4]
 gi|262106083|gb|EEY64135.1| ATP-dependent RNA helicase DBP2, putative [Phytophthora infestans
           T30-4]
          Length = 546

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 134/423 (31%), Positives = 202/423 (47%), Gaps = 46/423 (10%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           + F +      V+  V+  G+ KPTPIQ +  P+ L   D+ GI+ TG+GKT +F+LP  
Sbjct: 101 LSFEEASFPEYVLEEVVRLGFDKPTPIQCQGWPMALSGRDMVGISATGSGKTLAFLLPAI 160

Query: 60  -------------------------------------------LTILEKGRARVRMPRTL 76
                                                                   P  L
Sbjct: 161 VHINAQVRILQSLFTKLCIAHDGCSRSDKKKQHANTSNPSALACVCFLPYLQPGDGPIVL 220

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           ++ PTRELA Q+     K+G +  +    + GG+P   Q   L RG ++ ICTPGR++D 
Sbjct: 221 MIAPTRELAVQIQAECNKFGASSKIKNTCVYGGVPKGGQIADLRRGVEICICTPGRMIDM 280

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
            + GK  +  +  LV+DEADRMLDMGF P ++ I S +   RQTL++SAT   E+  ++ 
Sbjct: 281 LSMGKTNLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQTLMWSATWPKEIVALAN 340

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
           +FL +  ++ V +   TA       V     + K  +L    L+        IIFC  K+
Sbjct: 341 DFLTDFIQVTVGSLDLTANKRIKQIVEVMDDHQKYSSLQDH-LRDIYEGGRIIIFCETKR 399

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
               L  +L    +   AIHGN  Q  R  +L  FK+G  Q++VA+D+A+RGLDI D+ +
Sbjct: 400 GADELSRNLRNTRYICKAIHGNKSQEERDYVLREFKDGRTQILVATDVASRGLDIKDIRY 459

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDAIEKLIEKKVDWLNGDL 375
           V NFD+P   E+YIHRIGRT RAG  G + +      + +    + K++E+    +  +L
Sbjct: 460 VVNFDMPKNIEDYIHRIGRTARAGNKGTSISFFTASNNGRLAGPLVKIMEEAEQEVPREL 519

Query: 376 SSL 378
             L
Sbjct: 520 RDL 522


>gi|168052555|ref|XP_001778715.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669930|gb|EDQ56508.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 579

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 134/389 (34%), Positives = 205/389 (52%), Gaps = 15/389 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA++ L P +   +    Y KPTP+Q   IP+ L   D+   AQTG+GKTA+F  P++ 
Sbjct: 131 TFAEIDLGPALNENIRRCKYTKPTPVQKYAIPISLHGRDLMACAQTGSGKTAAFCFPIIA 190

Query: 62  ILEKGRA-------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            + +          R  +P  LIL PTREL+ Q++D  +K+     + V +  GG P   
Sbjct: 191 GIMRNTPPGRPRGGRKALPLALILSPTRELSCQISDEAKKFAYQTGIRVVVAYGGAPVHN 250

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q +++ERG D+L+ TPGR+ D   R ++ ++ +  L +DEADRMLDMGF P I+ I   +
Sbjct: 251 QLREMERGVDILVATPGRLSDLLERARVSLSMVRYLALDEADRMLDMGFEPQIRRIVEQM 310

Query: 175 PFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                   QT+LFSAT   E+Q+++ +FL N   + V    S+ + I            +
Sbjct: 311 DMPPAGERQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVQDADKR 370

Query: 231 KCALLQQLLQ----SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              +     Q            ++F   KK   +L   L + GF    IHG+  Q+ R  
Sbjct: 371 SMLMDLIHAQSALAPPGQQTLTLVFVETKKGADSLEDWLCRMGFPATTIHGDRSQQEREH 430

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L +F+ G   ++VA+D+AARGLDIP V HV NFD+P+  ++Y+HRIGRTGRAG+ G A 
Sbjct: 431 ALRSFRTGVTPILVATDVAARGLDIPHVAHVVNFDLPSDIDDYVHRIGRTGRAGKSGVAT 490

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDL 375
               ++D      + +L+ +    + G L
Sbjct: 491 AFFNEKDQSLARPLSELMTESNQEVPGWL 519


>gi|152996051|ref|YP_001340886.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150836975|gb|ABR70951.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 417

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 116/372 (31%), Positives = 202/372 (54%), Gaps = 2/372 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+L L   +  A+ D G+  PT IQ + IP+ L   D+   A TGTGKT +F  P +
Sbjct: 17  MSFAELDLDFTIEQAISDLGFEAPTEIQEQAIPIALDGSDLLATAPTGTGKTIAFCAPAV 76

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + ++       P+ LIL P+RELA Q+ +  E+  K+  +   L+IGG P+  Q ++L
Sbjct: 77  QHILDRDEQSTTAPKVLILAPSRELARQIFNVVEQLTKHTRIQSHLIIGGTPYGMQQQQL 136

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+L+ TPGR+++   +  L + ++   VIDEADRMLDMGF+  I  I   +P   Q
Sbjct: 137 SEPCDILVATPGRLVELDEKQWLDLTDVSYFVIDEADRMLDMGFVSAINCIAKELPKEHQ 196

Query: 180 TLLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           TL+FSAT   +++ + +   L +  +      SS     +   +A      +    + + 
Sbjct: 197 TLMFSATLEGEKMGRFASALLNSETQQIRLGESSRTVPSQIRQIAYRVDSEEHKEAVLKH 256

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +Q+ ++  ++F + +++V      + K G     +HG + Q  R + +   K G +Q+
Sbjct: 257 LLTQERVQQAVLFVSNREHVDIWVQRIRKMGLMCDGLHGEMKQGDRSEHMKQMKRGRLQV 316

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RG+D+P++  V N  +P +A++YIHR GR  R G  G   +L+   D+  I+
Sbjct: 317 LVATDVASRGIDLPEINTVINLRLPRKADSYIHRAGRASREGEPGDCISLIDINDLPMIE 376

Query: 359 AIEKLIEKKVDW 370
            I++ ++  + +
Sbjct: 377 KIQRFMQANIKF 388


>gi|6735368|emb|CAB68189.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
          Length = 603

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 133/386 (34%), Positives = 204/386 (52%), Gaps = 18/386 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD+ L   +   +    YV+PTP+Q   IP++L   D+   AQTG+GKTA+F  P+++
Sbjct: 152 TFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIIS 211

Query: 62  ILEKGRA-------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            + K +        R   P  +IL PTRELA Q+ D  +K+     + V +  GG P   
Sbjct: 212 GIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQ 271

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++LERG D+L+ TPGR+ D   R ++ M  I  L +DEADRMLDMGF P I+ I   +
Sbjct: 272 QLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQM 331

Query: 175 PFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                   QT+LFSAT   ++Q+++ +F+ N   + V    S+ + I            +
Sbjct: 332 DMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKR 391

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
              +     Q +   K         +    L + L    F   +IHG+  Q+ R   L +
Sbjct: 392 SHLMDLLHAQRETQDKTK-------RGADTLENWLCMNEFPATSIHGDRTQQEREVALRS 444

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G A     
Sbjct: 445 FKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFN 504

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLS 376
           + + +   ++ +L+++    +   L+
Sbjct: 505 ENNAQLARSLAELMQEANQEVPEWLT 530


>gi|312131519|ref|YP_003998859.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311908065|gb|ADQ18506.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 408

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 131/368 (35%), Positives = 218/368 (59%), Gaps = 4/368 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  + P++  A+ D GY KPT IQ K +P VL   D+ GIAQTGTGKTA+F +P+L
Sbjct: 1   MKFENYRILPEIKRAIADLGYKKPTDIQYKVLPKVLAGEDIMGIAQTGTGKTAAFAIPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L     + +  R L++ PT ELA Q+AD F+   KN  L +  L G    E Q K L+
Sbjct: 61  HLL-ASEKKSKSLRCLVMVPTHELAQQIADVFKSLAKNTRLKIMALYGSTDQEPQIKALQ 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DVL+ TPGR+ D   +G L + +I+ L++DEADRMLD+GF   I ++   +P   QT
Sbjct: 120 KGVDVLVTTPGRMFDLQAQGHLSLEDIKFLILDEADRMLDLGFYQDIIDVKKRIPKRHQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+ ++++K++ + ++N  RI+++     ++ I+H  V    +  +      + + 
Sbjct: 180 LFFSATLDEKIKKLAYSTVKNAIRIQISPDDPVSKNIDHSVVMVSMEDKRFF---LERMI 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++  +  I+F   K     +  ++ +       +H +     R   L +FK+G   +++
Sbjct: 237 TENPQQKIIVFVRTKVRAERVAAAMARVNIKTVTLHSDKSHIERKAALESFKKGETWVLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D++ARG+DIP V +V N+D+P+ AENY+HRIGRTGR  + GKA +  + E++  +++I
Sbjct: 297 ATDVSARGVDIPLVEYVINYDLPDVAENYVHRIGRTGRGTQKGKAVSFCSDEELPLLESI 356

Query: 361 EKLIEKKV 368
           E  +   +
Sbjct: 357 EDYLGYTI 364


>gi|303282327|ref|XP_003060455.1| DEAD/DEAH box helicase [Micromonas pusilla CCMP1545]
 gi|226457926|gb|EEH55224.1| DEAD/DEAH box helicase [Micromonas pusilla CCMP1545]
          Length = 671

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 125/407 (30%), Positives = 205/407 (50%), Gaps = 17/407 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G  +PTPIQI+ +P++L   D+ GIA TG+GK+ +F+LPM+ 
Sbjct: 225 SFKEMKFPGPILNELARKGIARPTPIQIQGLPVILTGRDIIGIAFTGSGKSLTFILPMIM 284

Query: 62  ILEKGRARVR-----MPRTLILEPTRELAAQVADNFE-------KYGKNYNLTVALLIGG 109
                  R+       P  LIL P+RELA Q  +  E       K G +    +  + G 
Sbjct: 285 SAMMEERRMPLQGMEGPCGLILCPSRELARQTHEVIEGFTVELSKQGMSEMRIMLCIGGI 344

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
              E  +   +RG  ++  TPGR+ D  +R ++ ++  + L +DEADRM+D+GF   I++
Sbjct: 345 DSREQSDIVRDRGVHMVTATPGRLKDLLHRKRMNLDICKYLCLDEADRMVDLGFEDDIRD 404

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I S     RQTLLFSATM  +++K    F ++     +      A       +       
Sbjct: 405 IYSFFKSQRQTLLFSATMPVKIRK----FAESALVNPIVVNVGRAGAANLDVIQEVEYVK 460

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           ++  ++  L   Q T    +IFC  K +V ++   L  +G    AIHG   Q  R   +S
Sbjct: 461 QEAKIVYLLECLQKTAPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKGQDERDWGIS 520

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK     ++VA+D+A +GLD P++ HV N+D+P   ENY+HRIGRTGR G+ G A T +
Sbjct: 521 EFKSERKDVLVATDVAGKGLDFPNIQHVINYDMPEEIENYVHRIGRTGRCGKTGIATTFI 580

Query: 350 AKEDIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
            K   +  +  ++ L+ +    +   L+ L+ P+++ +        K
Sbjct: 581 NKNQSETTLLDLKHLLREAKQRIPPVLAMLDDPMDQAEELAKLTGTK 627


>gi|115757139|ref|XP_786173.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115973714|ref|XP_001179743.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 487

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 140/432 (32%), Positives = 231/432 (53%), Gaps = 9/432 (2%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           G+   +  A     +  P+ IQ + +P+ LQ  DV G+A+TG+GKT +F LP+L  L + 
Sbjct: 64  GVVDVLCEACDKLKWKTPSKIQTEALPVALQGKDVIGLAETGSGKTGAFALPILQALLET 123

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
             R+     L+L PTRELA Q+A+ FE  G    ++  +++GGI    Q  +L +   V+
Sbjct: 124 PQRLFA---LVLTPTRELAYQIAEQFEALGSTIGVSCVVIVGGIDMMTQALQLAKKPHVM 180

Query: 127 ICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           I TPGR++DH    K      ++ LV+DEADR+L+M F   I  I  ++P  R+T L+SA
Sbjct: 181 IATPGRLVDHLENTKGFNLRGLKYLVMDEADRILNMDFEAEIDKILKVIPKQRRTYLYSA 240

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           TMT ++ K+    LQ+P ++EV+T   T   ++    +     +K        + ++   
Sbjct: 241 TMTKKVAKLQRASLQDPVKVEVSTKYQTVSKLQQ---SYIFIPAKYKDCYLVSILNEFAG 297

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
            + ++FC+   N   +   L   G +   +HG + Q  R+  L+ FK  +  +++A+D+A
Sbjct: 298 NSFMVFCSTCNNTQRVALLLRNLGLTAIPLHGQLSQSKRLGTLNKFKSKSRSILIATDVA 357

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    IE+LI+
Sbjct: 358 SRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRAGKAITFVTQYDVELYQRIEQLID 417

Query: 366 KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKES 425
           KK+     +   +   +E++  AQ     +     +K  G   R +   S++        
Sbjct: 418 KKLPLFKTEEEEVMMLMERVTEAQRYAKMEMRDSDEKKKG--GRSRGRDSKEDSEEFTGV 475

Query: 426 EKISKLQQDIQE 437
            K  K++Q  + 
Sbjct: 476 RKRMKVKQQGRR 487


>gi|134296056|ref|YP_001119791.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134139213|gb|ABO54956.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
           G4]
          Length = 516

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 143/392 (36%), Positives = 215/392 (54%), Gaps = 26/392 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGY KPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 36  TFASLGLSPEIVSALEAAGYAKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 95

Query: 62  ILEK-----------------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
              +                           V  P  L+L PTRELA QV      YGK+
Sbjct: 96  RFAQLQKSQAQQPRAPREPNQGDRRARRPQPVARPSLLVLTPTRELAMQVTTAATTYGKH 155

Query: 99  YNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
                   ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 156 LRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 215

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I+ I +  P +RQT+LFSAT+  ++  ++   L NP+RIE+     +   I
Sbjct: 216 MLDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTSRLLNNPERIEIVAKIESRANI 275

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                    +  K        L   D +   IIF   K +   L   L   GF   A+HG
Sbjct: 276 AQTVHYVDDRDHKDRL--LDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHG 333

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 334 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 393

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           RAGR G A +LV   +   +  IE+ +   + 
Sbjct: 394 RAGRSGTAVSLVHHAEQGALKRIERFVRSPLP 425


>gi|308493749|ref|XP_003109064.1| hypothetical protein CRE_11850 [Caenorhabditis remanei]
 gi|308247621|gb|EFO91573.1| hypothetical protein CRE_11850 [Caenorhabditis remanei]
          Length = 519

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 127/428 (29%), Positives = 211/428 (49%), Gaps = 19/428 (4%)

Query: 2   DFAD-LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F    G +P ++  +   G+ KP+PIQ +  P++L   D  G++QTG+GKT +F+LP  
Sbjct: 101 SFKQAFGNNPAIMAEIEKNGFEKPSPIQSQMWPILLCGKDCIGVSQTGSGKTLAFLLPAF 160

Query: 61  TI------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                     +   +   P  L+L PTRELA Q+    +KY  N   +V L  GG     
Sbjct: 161 LHIDAQLAQYEKNEKKPSPFVLVLSPTRELAQQIEGEVQKYSYNGYKSVCLY-GGGSRSE 219

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q +  + G +++I TPGR+ D  N G + + ++  +V+DEADRMLDMGF   I+ I   +
Sbjct: 220 QVQSCKGGVEIVIATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEAAIRRILFEI 279

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT---PSSTAETIEHCFVATYAQYSKK 231
              R   L SAT  + ++ +++ + +        +    S  + T    F+    ++ + 
Sbjct: 280 RPDRLVALTSATWPEGVRNLTDRYTKQAIMAVNGSLDLTSCKSVTQHFEFIPHENRFERV 339

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
           C ++  L  +       IIF   K    +L      +G +   +HG   Q  R   L   
Sbjct: 340 CEIVNFLNNAHGNSYKMIIFVKSKVMADHLSSEFCMKGINSQGLHGGRSQSDRELSLKML 399

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G +Q++VA+DLA+RG+D+PD+ HV N+D P   E Y+HR+GRTGRAGR G++ + +  
Sbjct: 400 RTGEVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGESMSFMWW 459

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            D  + D +  ++EK    +   L        K D A++    ++     + +  +R  K
Sbjct: 460 NDRSNFDGLISILEKSGQEVPEQL--------KRDAARYRQKCQDGRDGPRPSFRNRNNK 511

Query: 412 NYSSQKSH 419
             S Q S+
Sbjct: 512 ESSFQSSY 519


>gi|258611679|ref|ZP_05711599.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|258605374|gb|EEW17982.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
          Length = 424

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 133/416 (31%), Positives = 216/416 (51%), Gaps = 14/416 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G  P +  A+   G+ +PT +Q K IP +L+   + G +QTGTGKT +F+LP++  
Sbjct: 19  FDQFGFQPFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINN 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKLE 120
           +   +  V+     I  P+RELA Q+ +   K  K     +A+   IGG   +    KL+
Sbjct: 79  VNPEKEAVQAV---ITAPSRELATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLK 135

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++  + LVIDEAD  LDMGF+  + +I   +P   Q 
Sbjct: 136 KQPQIIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQM 195

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+  +L+     +++NP+   +    + ++T+EH      A  S+    L + + 
Sbjct: 196 LVFSATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEH---RIMATRSRNKLDLLKNVL 252

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F N K     + + L ++G  V  IHG+++ R R + +   +    Q +V
Sbjct: 253 VGSQPYLAIVFTNTKTTADEVANGLIERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVV 312

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI  + HV N+++P+  + YIHR GRTGRAG  G A TL    D   ++ +
Sbjct: 313 ATDLAARGIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQL 372

Query: 361 EKL-IE-KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           EK+ IE K VDW N +  +L    E  +      A++    P++     +R+K   
Sbjct: 373 EKMGIEFKHVDWKNKEFVTL----EDRNRRAKREAKRETADPREIGMRKKRQKQKR 424


>gi|297581406|ref|ZP_06943329.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC385]
 gi|297534244|gb|EFH73082.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC385]
          Length = 460

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 139/402 (34%), Positives = 226/402 (56%), Gaps = 9/402 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L L P+++  +   G+   TPIQ +++P +L+  DV G  +TG+GKTA+F L +L+
Sbjct: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+    L+L PTRELA QVA +    G+  +    L +  G+P   Q   LE
Sbjct: 65  NLNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH ++ ++ ++ +  LV+DEADRML+MGF   ++ I +  P  RQT
Sbjct: 122 HGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++++++  +N   I+V     T +T          + S       + L 
Sbjct: 182 LLFSATYPASIEQIAQSVTRNALMIKVEA---THDTSSIRQYFYKVEGSAARDEALETLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + ++FCN K+ V N+  +L + GFSV  +HG+++QR R + L  F   +I ++V
Sbjct: 239 LHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFN+D+    E ++HRIGRTGRAG  G AF+  +  +   +  I
Sbjct: 299 ATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQI 358

Query: 361 EKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           ++ ++  ++   L    +   P    +   Q +  +K+   P
Sbjct: 359 DEYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRP 400


>gi|153825787|ref|ZP_01978454.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-2]
 gi|254291477|ref|ZP_04962269.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae AM-19226]
 gi|149740510|gb|EDM54625.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-2]
 gi|150422667|gb|EDN14622.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae AM-19226]
          Length = 460

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 139/402 (34%), Positives = 226/402 (56%), Gaps = 9/402 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L L P+++  +   G+   TPIQ +++P +L+  DV G  +TG+GKTA+F L +L+
Sbjct: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+    L+L PTRELA QVA +    G+  +    L +  G+P   Q   LE
Sbjct: 65  NLNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH ++ ++ ++ +  LV+DEADRML+MGF   ++ I +  P  RQT
Sbjct: 122 HGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++++++  +N   I+V     T +T          + S       + L 
Sbjct: 182 LLFSATYPASIEQIAQSVTRNALMIKVEA---THDTSSIRQYFYKVEGSAARDEALETLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + ++FCN K+ V N+  +L + GFSV  +HG+++QR R + L  F   +I ++V
Sbjct: 239 LHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFN+D+    E ++HRIGRTGRAG  G AF+  +  +   +  I
Sbjct: 299 ATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQI 358

Query: 361 EKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           ++ ++  ++   L    +   P    +   Q +  +K+   P
Sbjct: 359 DEYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRP 400


>gi|71029630|ref|XP_764458.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68351412|gb|EAN32175.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 529

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 122/409 (29%), Positives = 213/409 (52%), Gaps = 10/409 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+D  LS  ++ ++ +  + K T IQ K IP +LQ  DV G A+TG+GKT +F++P+ 
Sbjct: 56  MLFSDFELSEPILRSLTENNFTKTTEIQAKCIPPLLQGKDVLGKAKTGSGKTLAFLIPLA 115

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L + +   R      I+ PTREL+ Q+ +   +  K    T+ L++GG   + +  KL
Sbjct: 116 EVLYQVKFLPRNGTGGLIISPTRELSLQIFEVAREVCKYLPQTLGLVMGGANRKQEEFKL 175

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +G ++LI TPGR+LDH    K  +  N+ + VIDEADR+L +GF   +  I  L+P  R
Sbjct: 176 CKGVNILIATPGRLLDHMQNTKGFVYKNLMVFVIDEADRILQIGFEQEMNQIIKLLPKNR 235

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT LFSAT T  ++ ++   L+ P    +   S+ + T+           ++   +L   
Sbjct: 236 QTSLFSATHTSNVEDLARLSLKAPVF--LEVMSNESATVSGLEQGYVVCEAENRFMLLYT 293

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  +  ++F +   +V      L      V +IHG   Q +R+     F +    +
Sbjct: 294 FLKKNLDRKVMVFFSSCNSVKFHDELLNYVDIPVKSIHGRKKQTNRLTTYYTFCKSNKGI 353

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  +D P+  ++YIHR+GRT R     GKA   +  E++  +
Sbjct: 354 LLCTDVAARGLDIPKVDWIVQYDPPDDPKDYIHRVGRTARGAEGKGKAILFLMPEELGFL 413

Query: 358 DAIEKLIEKKVDWLNGDL---SSLNPPLEKIDIAQHNHARKNNPIPQKS 403
             + K +   ++    +L   +++   LEK+ I ++ H  +++    +S
Sbjct: 414 HYL-KSLNVTINKYEFNLNKIANVQVQLEKL-IEKNFHLNRSSKDAYRS 460


>gi|327265659|ref|XP_003217625.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Anolis
           carolinensis]
          Length = 672

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 126/389 (32%), Positives = 197/389 (50%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G  +PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 232 SFKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 291

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +  +         AL IGG+
Sbjct: 292 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLHEDGMPSLRCALCIGGM 351

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + ++ G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 352 SVKEQMETIKHGVHMMVATPGRLMDLLQKKMVSLDVCRYLALDEADRMIDMGFEGDIRTI 411

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     +      A       +       +
Sbjct: 412 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPITINVGRAGAASLDVIQEVEYVKE 467

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 468 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 527

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F++G   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 528 FRDGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 587

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 588 KACDESVLMDLKALLLEAKQKVPPVLQVL 616


>gi|257126351|ref|YP_003164465.1| DEAD/DEAH box helicase [Leptotrichia buccalis C-1013-b]
 gi|257050290|gb|ACV39474.1| DEAD/DEAH box helicase domain protein [Leptotrichia buccalis
           C-1013-b]
          Length = 571

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 128/387 (33%), Positives = 210/387 (54%), Gaps = 10/387 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61
           F D GLS +++ A+   G+ +P+ IQ   +P +L+    + G AQTGTGKTA+F +P+L 
Sbjct: 4   FEDFGLSTEMLNALSKKGFEEPSEIQKLVVPELLKERTHLIGQAQTGTGKTAAFGIPILE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +      R LIL PTRELA QV+D         ++ V  + GG   E Q K+L+ 
Sbjct: 64  TIDADKT----VRALILAPTRELANQVSDEIYSLKGEKDIKVLAVYGGASIENQIKRLKA 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR++D  N+  L +N ++  V+DEAD ML+MGF+  I+ I       ++ L
Sbjct: 120 GVDIVVGTPGRVMDLINKKVLKVNGLDYFVLDEADEMLNMGFLEDIEEILEKTNDEKKML 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT+   +  +++ F+   K ++V     T    E  +     +   +        + 
Sbjct: 180 FFSATIPKAILAIAKRFMPEHKLLKVEKKELTTNLTEQIYYEVKQEDKFEALCRVLDYEQ 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                 GI+FC  K  V ++ + L+ + +    IHG+I Q  R K L  FK+  + ++VA
Sbjct: 240 NFY---GIVFCRTKSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKQILTILVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ ++ HV N+ +P  AE+Y+HRIGRTGRAG  G A T V   +   +  I+
Sbjct: 297 TDVAARGIDVSNLTHVINYSIPQEAESYVHRIGRTGRAGHKGIAITFVTPREASKLAQIK 356

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           ++ +  +     D+ ++   LE    A
Sbjct: 357 RVTKTDIKR--EDIPNVEEILEAKKEA 381


>gi|291239420|ref|XP_002739621.1| PREDICTED: Rs1-like [Saccoglossus kowalevskii]
          Length = 563

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 148/442 (33%), Positives = 231/442 (52%), Gaps = 22/442 (4%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           + LS  ++ A+    +V PTPIQ+ TIP+ L   D+C  A TGTGKTA+F+LP+L  L  
Sbjct: 1   MNLSRPLLKAINAMNFVHPTPIQVATIPVALLGKDICACAATGTGKTAAFMLPVLERLLY 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
              +  + R L+L PTREL  QV     +  +   +   L +GG+  + Q   L +G D+
Sbjct: 61  KPKQAAVTRVLVLVPTRELGIQVHSVTRQLAQFTEIDSCLAVGGLDVKLQEAVLRQGPDI 120

Query: 126 LICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +I TPGR++DH  N     ++NIEIL++DEADRMLD  F   ++ I  +   TRQT+LFS
Sbjct: 121 VIATPGRLIDHLHNAPSFSLSNIEILILDEADRMLDEYFEEQMKEIIRMCSITRQTMLFS 180

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           ATMTDE++ +    L+NP R+ +N  +  A  +   F+            +   L S+  
Sbjct: 181 ATMTDEVKDLVAVSLKNPVRLFINENTDVAYNLRQEFIRIRENREGDREAIAAALCSRTF 240

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             + I+F   KK    L   L   G +V  +HGN+ Q  R++ L  FKE  I +M+A+DL
Sbjct: 241 HDHVIVFVQTKKQCHRLHIILGMLGLNVGELHGNLSQTQRLETLRRFKESNIDIMLATDL 300

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           AARGLDI  +  + NF +PN  ++Y+HR+GRT RAG+ G++ +L  +++ K +  I K  
Sbjct: 301 AARGLDIEGIKTIINFTMPNTVKHYVHRVGRTARAGKSGRSVSLCGEKERKMLKEIVKRA 360

Query: 365 EKKVD--WLNGDL-SSLNPPLEKID-----------------IAQHNHARKNNPIPQKST 404
              V    +  D+ +     +EK++                 I++    +    I     
Sbjct: 361 RNPVKSRVVPPDIVAKYRDKIEKMETDIEKIIKLEEEEKELRISELQVNKAKAIIEHHDE 420

Query: 405 GFDRRKKN-YSSQKSHIPLKES 425
            + R K++ + S    +  KE 
Sbjct: 421 IYSRPKRSWFQSHMERMAEKEK 442


>gi|125839926|ref|XP_001340860.1| PREDICTED: probable ATP-dependent RNA helicase DDX6 [Danio rerio]
          Length = 483

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 118/393 (30%), Positives = 196/393 (49%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 89  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 148

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            ++    +    + ++L PTRELA QV+       K+   + V    GG        +L+
Sbjct: 149 RIDL---KKDYIQAIVLVPTRELALQVSQISINMSKHLGGIKVMATTGGTNLRDDIMRLD 205

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   ++ +++ V+DEAD++L   F+  I++I S +P  RQ 
Sbjct: 206 EIVHVIIATPGRILDLIKKGVAKVDKVQMAVMDEADKLLSQDFVVLIEDIISFLPKKRQI 265

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK    F+    +           T++           ++       L 
Sbjct: 266 LLYSATFPISVQK----FMTKHLQKPYEINLMDELTLKGITQYYAYVTERQKVHCLNTLF 321

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 322 SRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYRNRVFHDFRNGLCRNLV 381

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  ED  ++  I
Sbjct: 382 CTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLITSEDRFNLKGI 441

Query: 361 EKLIEKKVDWLN---------GDLSSLNPPLEK 384
           E  +   +  +           +  S+NP  E+
Sbjct: 442 EDQLMTDIKPIPSSIDKSLYVAEFHSMNPDEEE 474


>gi|19773876|gb|AAL98920.1| Bat1 [Rattus norvegicus]
          Length = 428

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 163/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 47  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY  N  + V      I  + +  K    
Sbjct: 107 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L +    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 167 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E+  V   F+Q+P  I V+  +         +        K   L        
Sbjct: 227 FSATLSKEIPPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL--LDV 284

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 285 LQFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 344

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V   FN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 345 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 404

Query: 362 KLIEKKVDWLNGDLS 376
              E  +  L  ++ 
Sbjct: 405 DRFEVNISELPDEID 419


>gi|168062675|ref|XP_001783304.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665222|gb|EDQ51914.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 497

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 104/392 (26%), Positives = 173/392 (44%), Gaps = 10/392 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L +S     A+ D G+   T IQ ++IP +L   DV G A+TG+GKT SFV+P + +
Sbjct: 6   FESLPVSEPTKNALKDTGFTHMTEIQARSIPQLLTGRDVLGAARTGSGKTLSFVVPAVEL 65

Query: 63  LEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
           L  G    R    +I + PTRELA Q+        K +  T  +++GG     + +K ++
Sbjct: 66  LFHGHFMPRNGTGVIVISPTRELAMQIYGVARDILKYHKQTHGIVMGGANRRTEAEKLVK 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++      +    N    +  N++ LVIDEADR+L++GF   ++ I  L+P  RQT
Sbjct: 126 GVNFLVATPGRLLDHLQNTKGFVFKNLKCLVIDEADRILEIGFEEEMKQIIKLLPKERQT 185

Query: 181 LLFSATMTDELQ---KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +LFSAT T ++    +                     +           +  K       
Sbjct: 186 VLFSATQTTKVCGGSRGRWGLRWMEVHAMSGKEWEALQESGMQSDCCSWEEDKGVVQQNV 245

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             +        ++F +   +V      L         IHG   Q+ R      F      
Sbjct: 246 GTRRGVAWMQIMVFFSSCNSVKFHSELLNYIDIPCLDIHGKQKQQKRTSTYFEFCNAEKG 305

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
           +++ +D+AARGLDIP V  +  +D P+    YIHR+GRT R  G  G+A   +  E++  
Sbjct: 306 ILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGEGAQGRALLFLIPEELGF 365

Query: 357 IDAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
           +  + K  +  ++        ++++   LEK+
Sbjct: 366 LKYL-KGAKVPLNEYEFPLNKIANVQSQLEKL 396


>gi|293503439|ref|ZP_06667286.1| helicase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291095105|gb|EFE25370.1| helicase [Staphylococcus aureus subsp. aureus 58-424]
          Length = 448

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 132/450 (29%), Positives = 222/450 (49%), Gaps = 15/450 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ + IP +L+R ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNKKLER 121
           ++     ++ P+ +++ PTRELA Q+ D      +        + IGG   E   ++   
Sbjct: 66  IDS---EIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRCNA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L ++    LVIDEAD M+D+G I  +  I + +      +
Sbjct: 123 QPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNANIV 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+ ++LQ     +L +P+ + V++     + IE   + T      +  L       
Sbjct: 183 VFSATIPEQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPTKGAAKVEKTLNL---ID 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+FCN + N  +L  SL + G  V  IHG +  R R + +   +    Q ++A
Sbjct: 240 ILNPYLCIVFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYVIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  IE
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 362 K--LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-----KKNYS 414
               +   VD  +G+L  +    ++    + +    N    +  +    +     KK + 
Sbjct: 360 DRGFVFNTVDIKDGELKEVKAHNQRQARMRKDDHLTNQVKNKVRSKIKNKVKPGYKKKFK 419

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLG 444
            +   +  +E ++ SK QQ+ Q+   +  G
Sbjct: 420 QEVEKMKRQERKQFSK-QQNRQKRKQNKKG 448


>gi|15642559|ref|NP_232192.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121587883|ref|ZP_01677639.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 2740-80]
 gi|153819936|ref|ZP_01972603.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae NCTC 8457]
 gi|153823551|ref|ZP_01976218.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae B33]
 gi|227082681|ref|YP_002811232.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae M66-2]
 gi|254225949|ref|ZP_04919551.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V51]
 gi|254851104|ref|ZP_05240454.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MO10]
 gi|255744466|ref|ZP_05418418.1| ATP-dependent RNA helicase DbpA [Vibrio cholera CIRS 101]
 gi|262154711|ref|ZP_06028837.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae INDRE 91/1]
 gi|298500611|ref|ZP_07010415.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MAK 757]
 gi|9657150|gb|AAF95705.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547853|gb|EAX57938.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 2740-80]
 gi|125621575|gb|EAZ49907.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V51]
 gi|126509518|gb|EAZ72112.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae NCTC 8457]
 gi|126518935|gb|EAZ76158.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae B33]
 gi|227010569|gb|ACP06781.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae M66-2]
 gi|254846809|gb|EET25223.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MO10]
 gi|255737991|gb|EET93384.1| ATP-dependent RNA helicase DbpA [Vibrio cholera CIRS 101]
 gi|262030551|gb|EEY49189.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae INDRE 91/1]
 gi|297540780|gb|EFH76837.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MAK 757]
          Length = 460

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 139/402 (34%), Positives = 226/402 (56%), Gaps = 9/402 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L L P+++  +   G+   TPIQ +++P +L+  DV G  +TG+GKTA+F L +L+
Sbjct: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+    L+L PTRELA QVA +    G+  +    L +  G+P   Q   LE
Sbjct: 65  NLNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH ++ ++ ++ +  LV+DEADRML+MGF   ++ I +  P  RQT
Sbjct: 122 HGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++++++  +N   I+V     T +T          + S       + L 
Sbjct: 182 LLFSATYPASIEQIAQSVTRNALMIKVEA---THDTSSIRQYFYKVEGSAARDEALETLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + ++FCN K+ V N+  +L + GFSV  +HG+++QR R + L  F   +I ++V
Sbjct: 239 LHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFN+D+    E ++HRIGRTGRAG  G AF+  +  +   +  I
Sbjct: 299 ATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQI 358

Query: 361 EKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           ++ ++  ++   L    +   P    +   Q +  +K+   P
Sbjct: 359 DEYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRP 400


>gi|328948732|ref|YP_004366069.1| DEAD/DEAH box helicase [Treponema succinifaciens DSM 2489]
 gi|328449056|gb|AEB14772.1| DEAD/DEAH box helicase domain protein [Treponema succinifaciens DSM
           2489]
          Length = 699

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 133/387 (34%), Positives = 208/387 (53%), Gaps = 10/387 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           + FADLGL    + A+   G+  P+PIQ+  IP +L    +V   A+TGTGKTA+F LP+
Sbjct: 35  ISFADLGLDEITLAAIEKKGFKVPSPIQVLAIPRLLNGDANVIAKARTGTGKTAAFGLPL 94

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  L +    VR     ILEPTRELA Q A     +        A++ GG     Q + L
Sbjct: 95  VQDLREESDHVRAI---ILEPTRELAMQTATEMASFTTGKYPRTAVVYGGASMGEQMRAL 151

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG ++++ TPGR+ D  +RG L ++ I+  ++DE D MLDMGFI  I+NI        +
Sbjct: 152 RRGVEIVVGTPGRVQDLIDRGVLDISKIDYFILDEGDEMLDMGFIEDIENIFECANQDCR 211

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT+  E+ K+++ F+   + +E          IE  +            +    +
Sbjct: 212 VLLFSATVPKEILKIAQRFMGEYEIVEEEGFEEEPLLIEQKYWVMRESEKVDALVRLIDI 271

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   G++F  +K +   +  SL+++G+   A+HG+I Q  R KIL+ F+    +++
Sbjct: 272 SPDFF---GLVFVQRKSDADYVSKSLDERGYEAAALHGDIPQGQREKILARFRSKKTRIL 328

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED-IKHID 358
           VA+D+AARG+DI  V HV N+++P     Y+HRIGRTGRAG  G A T V  E+  + ++
Sbjct: 329 VATDVAARGIDIEGVTHVVNYELPFDGPTYVHRIGRTGRAGAAGMAVTFVKPEETRRRLN 388

Query: 359 AIEKLIEK--KVDWLNGDLSSLNPPLE 383
            +   ++K  K + +   + S+   LE
Sbjct: 389 YLINTVKKSSKGEIVEDKVPSIEEVLE 415


>gi|302695203|ref|XP_003037280.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
 gi|300110977|gb|EFJ02378.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
          Length = 771

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 139/364 (38%), Positives = 206/364 (56%), Gaps = 3/364 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++ A+   G+ KPTPIQ  TIP+ L   DV G A TG+GKTA+F +PML 
Sbjct: 180 SFLTMNLSRPILKALTTLGFTKPTPIQAATIPVALLGKDVVGNAVTGSGKTAAFTIPMLE 239

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                +   +    R L+L PTRELA Q  +  +K   + ++ VAL++GG+  ++Q   L
Sbjct: 240 RLLYREKGKKAAATRCLVLVPTRELAVQCYEVGKKLAAHTDIEVALIVGGLSLKSQEATL 299

Query: 120 ERGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
               D++I TPGR++DH +       +N+++LV+DEADRML  GF   +  I    P +R
Sbjct: 300 RARPDIVIATPGRLIDHIHNSPSFTLDNLDVLVLDEADRMLSDGFADELTEIIKACPKSR 359

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATMTD + ++    L  P R+ V+   STA+ +   FV   A   K+ + L   
Sbjct: 360 QTMLFSATMTDSVDELVRMSLDKPVRLFVDPKRSTAKGLIQEFVRVRAGREKERSPLLVA 419

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L ++      IIF   KK    L       G     +HG++ Q  R+  L  F++GT+  
Sbjct: 420 LCTRTFKTRVIIFVRSKKLAHQLRIVFGLVGLKCGELHGDLSQEQRLNALQQFRDGTVDY 479

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+DLA+RGLDI  V  V N+D+P +   Y+HR+GRT RAG+ G++ TLV + D K + 
Sbjct: 480 LMATDLASRGLDIKGVETVINYDMPGQLAQYLHRVGRTARAGKKGRSVTLVGEGDRKMLK 539

Query: 359 AIEK 362
           A  K
Sbjct: 540 AAIK 543


>gi|289621648|emb|CBI52431.1| unnamed protein product [Sordaria macrospora]
          Length = 730

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 127/437 (29%), Positives = 204/437 (46%), Gaps = 36/437 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  L  +++  V + GY +PTPIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 296 SWDESTLPRRLLDIVKNVGYDEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLV 355

Query: 62  ILE-----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +          +   P  LIL PTREL  Q+    +K+      TV  ++GG   E Q 
Sbjct: 356 YISELPPLTEYNKNDGPYALILAPTRELVQQIESEAKKFATPLGFTVVSIVGGHSLEEQA 415

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GA++++ TPGR++D   R  L+ +     ++DEADRM+D GF   +  I   +P 
Sbjct: 416 YALRNGAEIIVATPGRLVDCLERRLLVFSQCCYTIMDEADRMIDQGFEEPLTKILDAMPV 475

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ--------- 227
           T +          +L     +     ++  + T +                         
Sbjct: 476 TNEKPDTDDAENPQLMSRYVDGKDRYRQTMMYTATMPPIVERIAKKYLRRPAIVTIGNAG 535

Query: 228 ---------------YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
                            K+   LQ++L S       I+F N K+N   +   ++  GFS 
Sbjct: 536 EAVDTVEQRVEFVAGEDKRKKRLQEILNSGQFKPPIIVFVNIKRNCDMVARDIKHMGFSA 595

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
             +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y HR
Sbjct: 596 VTLHGSKTQEQREAALASLRNGQTDILVATDLAGRGIDVPDVSLVVNFNMATNIESYTHR 655

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T +  ED   +  + ++I K        +S +   L + + AQ N 
Sbjct: 656 IGRTGRAGKSGVAITFLGPEDNDVLYDLRQIISK------SSISKVPDELRRHEAAQ-NK 708

Query: 393 ARKNNPIPQKSTGFDRR 409
            +K     ++S G+  +
Sbjct: 709 PQKGQKKLEESNGYSGK 725


>gi|258648289|ref|ZP_05735758.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           tannerae ATCC 51259]
 gi|260852209|gb|EEX72078.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           tannerae ATCC 51259]
          Length = 607

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 133/370 (35%), Positives = 214/370 (57%), Gaps = 8/370 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60
            F +LG++ ++  A+ + GY  P P+Q + IP +L   +DV  +AQTGTGKTA++ LP+L
Sbjct: 3   TFEELGVNEEIRRAIAELGYENPMPVQEEVIPYLLGVGNDVIALAQTGTGKTAAYGLPVL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++  +   +     IL PTREL  Q+AD+ + Y +  +      + G    E+Q + L
Sbjct: 63  QKVDPTQRTTQAV---ILSPTRELCLQIADDLKDYSRYIDGLHVQAVYGGTSIESQIRSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA V++ TPGR++D   RG   + N+E +V+DEAD ML+MGF   I  I + VP  R 
Sbjct: 120 KRGAQVIVATPGRLIDLMERGVAKLENVENVVLDEADEMLNMGFTESIDAILAGVPENRN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL FSATM+ E+++++ N+L + K I V + +  AE + H     Y   ++      + +
Sbjct: 180 TLFFSATMSREIERIARNYLHDHKEIVVGSRNEGAENVNH---TYYLVQARDKYHALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   GIIFC  +     +  +L K G++  A+HG++ Q  R   +  F++   QL+
Sbjct: 237 VDYYPKIYGIIFCRTRLETQEVADALIKDGYNAEALHGDLSQAQRDLTMQKFRQHNTQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+ D+ HV N+ +P+  ENYIHR GRTGR G+ G +  ++   +   I  
Sbjct: 297 IATDVAARGLDVDDLTHVINYGMPDDIENYIHRSGRTGRIGKRGASIAIIHLREKGKIRN 356

Query: 360 IEKLIEKKVD 369
           IE+ I K+ +
Sbjct: 357 IERTIGKQFE 366


>gi|224825377|ref|ZP_03698482.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224602298|gb|EEG08476.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 460

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 155/405 (38%), Positives = 222/405 (54%), Gaps = 16/405 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ L LSP +V  +   GY + TPIQ +++P++L R D+   A+TG+GKTA+F L +L 
Sbjct: 5   DFSSLPLSPSLVDNLASLGYTRMTPIQAQSLPVILNRQDLIAQAKTGSGKTAAFGLGLLD 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            +      V+    L+L PTRELA QVA    +  ++ +    + +  G P   Q   LE
Sbjct: 65  KINPRWFAVQ---ALVLCPTRELADQVAKEIRRLARSVDNIKVVTLCGGTPMGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGR+ DH +R  L ++ +E LV+DEADRM+DMGF   I  I +  P  RQT
Sbjct: 122 HGAHVVVGTPGRLHDHLSRNTLDLSTVETLVLDEADRMVDMGFYEEIVGIVAACPRKRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D ++K S  FL+NP  ++V +         H     Y    ++       L 
Sbjct: 182 LLFSATYPDTIRKQSARFLKNPVEVKVESLHDAG----HIEQHFYKIQPERRVATVAALL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + I FCN K+ V  L + L++QGFS  A++G ++QR R +IL  F   +  ++V
Sbjct: 238 GHFRPVSTIAFCNTKQQVRELANELQQQGFSALALYGELEQRERDEILVQFANRSCSVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N D+ +  E +IHRIGRTGR G  G A +LV   D K +  I
Sbjct: 298 ATDVAARGLDISTLEAVINVDLSHDPEIHIHRIGRTGRGGEKGLALSLVGPNDSKRLALI 357

Query: 361 EKLIEKKVDW-----LNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           E   + K +W     L    S L PP+  + IA     RK+   P
Sbjct: 358 EDYQQAKPNWADPAELTSSGSPLVPPMVTLCIAA---GRKDKVRP 399


>gi|218676922|ref|YP_002395741.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus LGP32]
 gi|218325190|emb|CAV27104.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 468

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 145/460 (31%), Positives = 243/460 (52%), Gaps = 19/460 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ + L P+++  +   GY + TPIQ  ++P +L   DV G  +TG+GKTA+F L +L 
Sbjct: 14  KFSSIALKPELLNTLDSLGYTEMTPIQALSLPTILDGKDVIGQGKTGSGKTAAFGLGVLQ 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            L   R RV+    L+L PTRELA QVA       +  +    L + G +P   Q   LE
Sbjct: 74  NLRVKRFRVQS---LVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLE 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH  R ++ ++ +  LV+DEADRML+MGF   +  +    P  RQT
Sbjct: 131 HGAHILVGTPGRILDHLERDRIDLSELNTLVLDEADRMLEMGFQDALDAVIEAAPKDRQT 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT   +++ V++  + NP+ ++V +    +   +H +     +         +L+ 
Sbjct: 191 LLFSATFPKQIKSVADRIMNNPEMVKVESTHDHSSIQQHFYKVEGTEARDDA---LELML 247

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++FCN KK V N+   L  +GFSV  +HG+++QR R + L  F   TI ++V
Sbjct: 248 LHHQPESAVVFCNTKKEVQNVNDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILV 307

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G A +  +++++  +  I
Sbjct: 308 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAISFFSEKEMHRVAQI 367

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE------KIDIAQHNHARKNNPIP--QKSTGFDRR--- 409
           ++ ++  ++        +  P        +ID  +    R  + +       G D +   
Sbjct: 368 DEYMDMPIEPSQLPAKPIAKPYYSNMVTIQIDGGKKAKLRAGDILGALTGQGGIDGKSVG 427

Query: 410 KKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNM 449
           K N  + ++++ ++ S     L + I+        FR  +
Sbjct: 428 KINLFAMRAYVAVERSMAKKALGK-IESGKMKGRQFRARI 466


>gi|270010045|gb|EFA06493.1| hypothetical protein TcasGA2_TC009390 [Tribolium castaneum]
          Length = 691

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 153/463 (33%), Positives = 243/463 (52%), Gaps = 26/463 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F  + LS  ++ A+ D  +V PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP + 
Sbjct: 138 SFYQMNLSRPLLKAISDMKFVHPTPIQASTIPVALMGRDICGCAATGTGKTAAYMLPTLE 197

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L +      + R L+L PTREL  QV    ++  +  ++ + L +GG+  +AQ   L 
Sbjct: 198 RLLYRPVGGPPVTRVLVLVPTRELGVQVYQVTKQLAQFSDIQIGLAVGGLDLKAQETILR 257

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  D++I TPGR++DH  +     +++IE+L++DEADRMLD  F   ++ I      TRQ
Sbjct: 258 KNPDIVIATPGRLIDHLKSTPTFGLDSIEVLILDEADRMLDEYFAEQMKEIIKQCARTRQ 317

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMT+E++ ++   L  P R+ V++    A  +   FV            +   L
Sbjct: 318 TMLFSATMTEEVESLAAVSLNKPVRLFVDSNREVAFGLRQEFVRIRQDKEGDREAILAAL 377

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ ++F   KK    L   L   G  V  +HGN+ Q  R+  L  FKE  I ++
Sbjct: 378 VCRTFREHCMVFVQTKKQAHRLHILLGLLGLKVGELHGNLTQPQRLDALQKFKETQIDVL 437

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  
Sbjct: 438 VATDVAARGLDIQGVQTVINFVMPATVEHYIHRVGRTARAGRAGVSVSLAGEQERKIVKD 497

Query: 360 IEK--------------LIEK---KVDWLNGDLSS-LNPPLEKIDIAQ-HNHARKNNPIP 400
           + K              ++EK   K++ L   ++  L    E+  +A+  N   K   + 
Sbjct: 498 VVKKAKHPVKSRVIPPDILEKYKNKLEKLEPQIAQILQEEYEERQVAKVENQVNKVEKLL 557

Query: 401 QKSTGFDRR----KKNYSSQKSHIPLKESEKISKLQQDIQEND 439
           +   G  R     KK    +K  + LK+  K +K  +D +++ 
Sbjct: 558 KGEKGEARPWFQTKKQRKDEKKRLSLKDVPK-NKSDKDKRKHK 599


>gi|86145730|ref|ZP_01064059.1| ATP-dependent RNA helicase DbpA [Vibrio sp. MED222]
 gi|85836429|gb|EAQ54558.1| ATP-dependent RNA helicase DbpA [Vibrio sp. MED222]
          Length = 459

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 145/460 (31%), Positives = 243/460 (52%), Gaps = 19/460 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ + L P+++  +   GY + TPIQ  ++P +L   DV G  +TG+GKTA+F L +L 
Sbjct: 5   KFSSIALKPELLNTLDSLGYTEMTPIQALSLPTILDGKDVIGQGKTGSGKTAAFGLGVLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            L   R RV+    L+L PTRELA QVA       +  +    L + G +P   Q   LE
Sbjct: 65  NLRVKRFRVQS---LVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH  R ++ ++ +  LV+DEADRML+MGF   +  +    P  RQT
Sbjct: 122 HGAHILVGTPGRILDHLERDRIDLSELNTLVLDEADRMLEMGFQDALDAVIEAAPKDRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT   +++ V++  + NP+ ++V +    +   +H +     +         +L+ 
Sbjct: 182 LLFSATFPKQIKSVADRIMNNPEMVKVESTHDHSSIQQHFYKVEGTEARDDA---LELML 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++FCN KK V N+   L  +GFSV  +HG+++QR R + L  F   TI ++V
Sbjct: 239 LHHQPESAVVFCNTKKEVQNVNDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G A +  +++++  +  I
Sbjct: 299 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAISFFSEKEMHRVAQI 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE------KIDIAQHNHARKNNPIP--QKSTGFDRR--- 409
           ++ ++  ++        +  P        +ID  +    R  + +       G D +   
Sbjct: 359 DEYMDMPIEPSQLPAKPIAKPYYSNMVTIQIDGGKKAKLRAGDILGALTGQGGIDGKSVG 418

Query: 410 KKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNM 449
           K N  + ++++ ++ S     L + I+        FR  +
Sbjct: 419 KINLFAMRAYVAVERSMAKKALGK-IESGKMKGRQFRARI 457


>gi|308484167|ref|XP_003104284.1| hypothetical protein CRE_25008 [Caenorhabditis remanei]
 gi|308258253|gb|EFP02206.1| hypothetical protein CRE_25008 [Caenorhabditis remanei]
          Length = 572

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 129/437 (29%), Positives = 213/437 (48%), Gaps = 16/437 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++LG+S  ++  +        TP+Q   IP +L   D+ G A+TGTGKT +F +P+L 
Sbjct: 41  KFSELGVSSWIIQQLQTMHISTATPVQAACIPKILSGSDILGCARTGTGKTLAFAIPILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L            LIL PTRELA Q+AD F   GK   L  ++++GG     Q ++L  
Sbjct: 101 KLSI---DPYGIYALILTPTRELAFQIADQFSAVGKPITLKCSVIVGGRSLIHQARELSD 157

Query: 122 GADVLICTPGRILDHFN----RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              +++ TPGR+ D  N        +   I+  V+DEADRML+  +   ++ I   +P  
Sbjct: 158 RPHIVVATPGRLADLINSDAEIIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFEAIPAK 217

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS---STAETIEHCFVATYAQYSKKCAL 234
           RQTLL SAT+T+ +  + +   + P   E  +     +     +   V   A        
Sbjct: 218 RQTLLLSATITNNINMLHKVSTRKPYFFEDKSKDAESTVDRLEQKFVVCPVAVKDAYLVY 277

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + +    ++   + +IF    +    L +  E  GF V ++H  I Q+ R+  LS F+  
Sbjct: 278 VVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRSK 337

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           T+ +++ +D+A+RGLDIP V  V N +VP  A+ YIHR+GR+ RAGR G A + V + D+
Sbjct: 338 TLNVIICTDVASRGLDIPHVDLVVNHNVPQCAKTYIHRVGRSARAGRFGSALSFVTQYDV 397

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           + + A+E+ I KK++ L    S      EK D       +    I + S     + +  +
Sbjct: 398 ELLQAVEQTIGKKLEELKIQNS------EKFDSKASKARQITRKIWKNSIQKASKARQIT 451

Query: 415 SQKSHIPLKESEKISKL 431
            +     +++ +   K 
Sbjct: 452 RKIWKNYIQKIQNSEKF 468


>gi|189238701|ref|XP_968537.2| PREDICTED: similar to Rs1 CG2173-PA [Tribolium castaneum]
          Length = 1657

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 153/463 (33%), Positives = 243/463 (52%), Gaps = 26/463 (5%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
             F  + LS  ++ A+ D  +V PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP + 
Sbjct: 1104 SFYQMNLSRPLLKAISDMKFVHPTPIQASTIPVALMGRDICGCAATGTGKTAAYMLPTLE 1163

Query: 61   TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +L +      + R L+L PTREL  QV    ++  +  ++ + L +GG+  +AQ   L 
Sbjct: 1164 RLLYRPVGGPPVTRVLVLVPTRELGVQVYQVTKQLAQFSDIQIGLAVGGLDLKAQETILR 1223

Query: 121  RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  D++I TPGR++DH  +     +++IE+L++DEADRMLD  F   ++ I      TRQ
Sbjct: 1224 KNPDIVIATPGRLIDHLKSTPTFGLDSIEVLILDEADRMLDEYFAEQMKEIIKQCARTRQ 1283

Query: 180  TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            T+LFSATMT+E++ ++   L  P R+ V++    A  +   FV            +   L
Sbjct: 1284 TMLFSATMTEEVESLAAVSLNKPVRLFVDSNREVAFGLRQEFVRIRQDKEGDREAILAAL 1343

Query: 240  QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +   ++ ++F   KK    L   L   G  V  +HGN+ Q  R+  L  FKE  I ++
Sbjct: 1344 VCRTFREHCMVFVQTKKQAHRLHILLGLLGLKVGELHGNLTQPQRLDALQKFKETQIDVL 1403

Query: 300  VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            VA+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  
Sbjct: 1404 VATDVAARGLDIQGVQTVINFVMPATVEHYIHRVGRTARAGRAGVSVSLAGEQERKIVKD 1463

Query: 360  IEK--------------LIEK---KVDWLNGDLSS-LNPPLEKIDIAQ-HNHARKNNPIP 400
            + K              ++EK   K++ L   ++  L    E+  +A+  N   K   + 
Sbjct: 1464 VVKKAKHPVKSRVIPPDILEKYKNKLEKLEPQIAQILQEEYEERQVAKVENQVNKVEKLL 1523

Query: 401  QKSTGFDRR----KKNYSSQKSHIPLKESEKISKLQQDIQEND 439
            +   G  R     KK    +K  + LK+  K +K  +D +++ 
Sbjct: 1524 KGEKGEARPWFQTKKQRKDEKKRLSLKDVPK-NKSDKDKRKHK 1565


>gi|313623752|gb|EFR93892.1| probable ATP-dependent RNA helicase YqfR [Listeria innocua FSL
           J1-023]
          Length = 435

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 136/429 (31%), Positives = 221/429 (51%), Gaps = 15/429 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G  P +  A+   G+ +PT +Q K IP +L+   + G +QTGTGKT +F+LP++  
Sbjct: 7   FDQFGFQPFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINN 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKLE 120
           +   +  V+     I  P+RELA Q+ +   K  K     +A+   IGG   +    KL+
Sbjct: 67  VNPEKDAVQAV---ITAPSRELATQIYNEIRKVTKFSEKEIAVQLVIGGTDKQRAIDKLK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++  + LVIDEAD  LDMGF+  + +I   +P   Q 
Sbjct: 124 KQPQIIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQM 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+  +L+     +++NP+   +    + ++T+EH      A  S+    L + + 
Sbjct: 184 LVFSATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEH---RIMATRSRNKLDLLKNVL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F N K     + + L ++G  V  IHG+++ R R + +   +    Q +V
Sbjct: 241 VGSQPYLAIVFTNTKTTADEVANGLIERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI  + HV N+++P+  + YIHR GRTGRAG  G A TL    D   ++ +
Sbjct: 301 ATDLAARGIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQL 360

Query: 361 EKL-IE-KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK-STGFDRRKKNYSSQK 417
           EK+ IE K VDW N +  +L    E  +      A++    P++       ++K   + K
Sbjct: 361 EKMGIEFKHVDWKNKEFVTL----EDRNRRAKREAKRETADPREIGMRKKAKQKGKPNYK 416

Query: 418 SHIPLKESE 426
             I  K +E
Sbjct: 417 KKINYKMNE 425


>gi|258617566|gb|ACV83780.1| DEAD box ATP-dependent RNA helicase-like protein [Heliconius
           melpomene]
          Length = 646

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 125/379 (32%), Positives = 204/379 (53%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--L 60
           F +      ++  + + G+ +PT IQ +  P+ L   D+ GIA TG+GKT +++LP    
Sbjct: 237 FDEGNFPDHIMNTIKEQGWEEPTGIQAQGWPIALSGRDMVGIASTGSGKTLAYMLPAAVH 296

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + ++   R   P  LIL PTRELA Q+    + Y  +  +    L GG P   Q + LE
Sbjct: 297 IVHQQRIQRGDGPIALILAPTRELAQQIQSVAQAYSAHGCIRNTCLFGGSPKGPQARDLE 356

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 357 RGVEIVIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 416

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLL 239
           L++SAT   E+Q ++E+FL +  ++ + + + +A       +    ++ K+         
Sbjct: 417 LMWSATWPKEIQALAEDFLTDYVKVNIGSLNLSANNNIKQIIEVCEEHEKEVKLTNLLKE 476

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +     I+F   KK V ++  ++ + G    AIHG+  Q+ R  +L+ F+ G   ++
Sbjct: 477 IASEKDNKVIVFVETKKKVDDIARAVRRNGHKALAIHGDKSQQERDAVLTEFRNGATTIL 536

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLD+ DV  V NFD PN +E+YIHRIGRTGR  + G A+T     D +   +
Sbjct: 537 IATDVAARGLDVEDVKFVVNFDYPNTSEDYIHRIGRTGRCQQSGTAYTYFTSGDARQARS 596

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +  ++ +        L+ +
Sbjct: 597 LLAVLRETGQNPPAKLNDM 615


>gi|257815096|gb|ACV69940.1| vasa [Osphronemus goramy]
          Length = 653

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 137/430 (31%), Positives = 219/430 (50%), Gaps = 31/430 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   V  +GYVKPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 218 LTFDEAALCETLRKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 277

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + ++ P  LI+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 278 QQLMADGVAASRFSELQEPEALIVAPTRELINQIYLEARKFSFGTCVRPVVVYGGVSTAH 337

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
           Q +++ RG +VL  TPGR+LD   RGK+ ++ +  LV+DEADRMLDMGF P ++      
Sbjct: 338 QIREISRGCNVLCGTPGRLLDVIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRRLVGSP 397

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++Q+++ +FL+             A +          ++SK
Sbjct: 398 GMPSKENRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFVQVTKFSK 457

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +       L      +  ++F   K+    +   L ++     +IHG+ +QR R + L++
Sbjct: 458 RE--QLLDLLKTTGTERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALAD 515

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDIPDV HV NFD+P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 516 FRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPSNIDEYVHRIGRTGRCGNTGRAVSFYD 575

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            E D     ++  ++ K    +   L                 A  + P    STGF+  
Sbjct: 576 PEADGHLARSLVGVLSKAQQEVPSWLEE---------------AAFSGP---SSTGFNPP 617

Query: 410 KKNYSSQKSH 419
           +KN++S  + 
Sbjct: 618 RKNFASTDTR 627


>gi|258621511|ref|ZP_05716544.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM573]
 gi|258586129|gb|EEW10845.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM573]
          Length = 412

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 147/403 (36%), Positives = 226/403 (56%), Gaps = 7/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLS  +   V   GY  PT IQ + IP++LQ  D+   AQTGTGKTASFVLP+L
Sbjct: 15  MPFSQLGLSDVLTQTVARLGYQTPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPVL 74

Query: 61  TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L +G+  R +  R LIL PTRELA QVA+  E+YG++  L    + GG+  +AQ ++L
Sbjct: 75  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGQDTGLKSLAVFGGVDEQAQKQRL 134

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR++D + +  +    IE++V+DEADRMLDMGFI  I  I   +P   Q
Sbjct: 135 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 194

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +++++++  + +P  I +    ++   I    +                 
Sbjct: 195 FLLFSATLSRKVRELAKTAVNDPYEISIAANQASKSNISQWLITVDKDTKSALLSHL--- 251

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      +IF   K     L   LEK+G    A H    Q  R ++L +FK G I+ +
Sbjct: 252 INEQQWDQALIFIETKHGAAKLVTQLEKRGIQAEAFHSGRSQAIRAQLLEDFKSGKIKYL 311

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +AARG+DI  +  V N+D+P  A+ Y+HRIGRTGRA   G+A + V+K++ K++  
Sbjct: 312 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRADAVGEAISFVSKDNFKNLCM 371

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           IE  +   ++     +     P + + I+  N+  K+  + Q+
Sbjct: 372 IESRLGHLIER---RVVEGFEPKKPVPISILNYVPKHKRVQQE 411


>gi|224139932|ref|XP_002323346.1| predicted protein [Populus trichocarpa]
 gi|222867976|gb|EEF05107.1| predicted protein [Populus trichocarpa]
          Length = 611

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 143/425 (33%), Positives = 216/425 (50%), Gaps = 21/425 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FAD+ L   V   +    YVKPTP+Q   IP++L   D+   AQTG+GKTA+F  P+  
Sbjct: 156 TFADIDLGEAVNQNIRRCKYVKPTPVQRNAIPILLAGRDLMACAQTGSGKTAAFCFPIIA 215

Query: 60  -----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                  +      R   P  LIL PTREL++Q+ D  +K+     + V ++ GG P   
Sbjct: 216 GIMREQYVQRPHGGRTMYPLALILSPTRELSSQIHDEAKKFSYQTGVKVVVVYGGAPINQ 275

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
           Q ++LERG D+L+ TPGR++D   R ++ +  I  L +DEADRMLDMGF P I+     +
Sbjct: 276 QLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQM 335

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQT+LFSAT   E+Q+++ +FL N   + V    S+ + I            +
Sbjct: 336 DMPPCGMRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQEIDKR 395

Query: 231 KCALLQQLLQSQDTMKN----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              +     Q +  + +     ++F   KK   +L H L   GF   +IHG+  Q+ R  
Sbjct: 396 SHLMDLLHAQRETEVNSKHSLTLVFVETKKGADSLEHLLHVNGFPATSIHGDRTQQEREM 455

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG  G A 
Sbjct: 456 ALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNTGLAT 515

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
               +  +     +  L+++    +   L+     +       H+  +       +  G 
Sbjct: 516 AFFNENSMSLARPLADLMQEANQVVPAWLTRYASRV------LHSGGKNRRSAGARFGGR 569

Query: 407 DRRKK 411
           D R++
Sbjct: 570 DFRRE 574


>gi|117647206|ref|NP_001071115.1| probable ATP-dependent RNA helicase DDX4 [Rattus norvegicus]
 gi|2500526|sp|Q64060|DDX4_RAT RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog;
           Short=rVLG
 gi|806464|gb|AAB33364.1| vasa-like gene protein [Rattus sp.]
          Length = 713

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 123/429 (28%), Positives = 211/429 (49%), Gaps = 20/429 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP+VL   D+   AQTG+GKTA+F+LP+L
Sbjct: 273 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPIL 332

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             + +          ++ P  +I+ PTREL  Q+     K+     +   ++ GG  F  
Sbjct: 333 AHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGH 392

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +++ +G ++L  TPGR++D   + K+ +  ++ LV+DEADRMLDMGF P ++ + S  
Sbjct: 393 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCP 452

Query: 175 PFTRQTLL----FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
               +       FSAT  +E+Q+++  FL++            A       +       K
Sbjct: 453 GMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGPVFK 512

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K  L++  +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 513 KRKLVE--ILRNIGDERPMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 570

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV- 349
           F+ G   ++VA+ +AARGLDI +V HV NF++P+  + Y+HRIGRTGR G  G+A +   
Sbjct: 571 FRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFD 630

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            + D      +       V  L+     +   LE+I  + +     +N            
Sbjct: 631 TESDNHLAQPL-------VKVLSDAQQDVPAWLEEIAFSSYAPPSFSNSTRGAVFASFDT 683

Query: 410 KKNYSSQKS 418
           +KN+  + +
Sbjct: 684 RKNFQGKNT 692


>gi|253741975|gb|EES98832.1| Translation initiation factor eIF-4A, putative [Giardia
           intestinalis ATCC 50581]
          Length = 391

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 113/377 (29%), Positives = 182/377 (48%), Gaps = 7/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L P ++  +   GY  P+ IQ + I  ++   D    AQ+GTGKTA+F + ML 
Sbjct: 21  KFDDMDLHPDLLFGIFSYGYKTPSAIQSQAIVPIISGKDTIAQAQSGTGKTAAFTIGMLQ 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++        P+ +IL PTRELA Q     E  G    + VA  IGG   +      + 
Sbjct: 81  RIDIAMKS---PQAIILSPTRELALQTLKVVEGIGSRLQVEVAQCIGGTQVDDDITAAQS 137

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +     +     N   + ++DEAD ML  GF   I +I   +    Q +
Sbjct: 138 CHLIVATPGRLLSLLQKKYVTTSNVKMV-ILDEADEMLSRGFTEQIVSIMKFMNADIQIV 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+++P  I V     T + I                 + + +  
Sbjct: 197 LVSATLPPEILELTRQFMRDPVSILVKEAELTLDGIRQ---YVVELQDAWKTEVVEDIYK 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             +++ G+IFCN    V  L   L+  G ++  IH  +DQ  R KI+  F+ G  ++++A
Sbjct: 254 VLSVQQGVIFCNSIARVKELAEKLKSAGHTISCIHSELDQAERNKIMGEFRSGQTRILIA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +++ ARG+D+ +V  V N+D+P  AE Y+HRIGR+GR GR G A   V  +D + + +I 
Sbjct: 314 TNIIARGIDVQNVSLVINYDIPREAETYLHRIGRSGRFGRKGVAINFVTDKDKQSMQSIT 373

Query: 362 KLIEKKVDWLNGDLSSL 378
                  + L  DLSSL
Sbjct: 374 DKFNVTTENLPEDLSSL 390


>gi|193641205|ref|XP_001950880.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
           [Acyrthosiphon pisum]
          Length = 569

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 115/373 (30%), Positives = 191/373 (51%), Gaps = 4/373 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI---LEKG 66
           P ++  +    ++ P+PIQ +  P+++  HD+  IAQTGTGKT +++LP L         
Sbjct: 194 PDIMKVIKKQKFIVPSPIQCQAWPIIMSGHDLIAIAQTGTGKTLAYILPALIHLLQQPTP 253

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK-KLERGADV 125
           R +   P  LIL PTREL  Q+ D   KY  N    V +  GG+      +       D+
Sbjct: 254 RIKRIGPSVLILGPTRELVLQIHDEITKYLHNNIKVVCVYGGGVSALTHQELIQAEKPDI 313

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           ++ TPGR+ D      + ++++  +V+DEADRMLDMGF   I+     +   +QT+L SA
Sbjct: 314 IVATPGRLNDLVGIQAIKLDHVSYMVLDEADRMLDMGFKNQIELSLRHIRPDKQTILTSA 373

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           T    +Q ++  F +NP  I + +   +        +    ++ K+  L   +       
Sbjct: 374 TWPTAVQNLANYFAKNPLHITIGSLDLSTVDTVTQKIIILKEHQKEGWLDNFISNDLSKN 433

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              IIF  +K +V  +  +   +      IHG   Q  R   L++ + G + +++A+D+A
Sbjct: 434 DKVIIFMRKKTSVDKMYENFNSKNIGCRCIHGGRLQADREASLADIRNGVVSILIATDVA 493

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RG+DI D+  V N+D P   E Y+HR+GRTGRAG+ G A TL +K D  +  A+  ++E
Sbjct: 494 SRGIDIHDISLVINYDFPLNIEEYVHRVGRTGRAGKTGSAITLFSKYDKFNASALIGVLE 553

Query: 366 KKVDWLNGDLSSL 378
           K    +  +L ++
Sbjct: 554 KSKQPIPPELYTM 566


>gi|323141176|ref|ZP_08076077.1| putative DEAD-box ATP-dependent RNA helicase CshA
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414319|gb|EFY05137.1| putative DEAD-box ATP-dependent RNA helicase CshA
           [Phascolarctobacterium sp. YIT 12067]
          Length = 418

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 130/369 (35%), Positives = 200/369 (54%), Gaps = 10/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L +    V  +   G  KP P+Q + IP +    DV   AQTGTGKT +F++P+   
Sbjct: 5   FAALKVCAHTVEQLQKMGIKKPMPVQEQAIPALFAGRDVIARAQTGTGKTLAFLVPLAEK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++  ++ V+    L++ PTRELA Q+A   +K     ++ V  + GG  FE Q  KLE  
Sbjct: 65  IDTAKSYVQA---LVITPTRELAQQIATEMKKILGESDIKVLAVTGGRDFETQKYKLEGR 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + VLI TPGR+LDH  +G   +  +  LV+DE D ML  GF+     + ++     QT+L
Sbjct: 122 SHVLIGTPGRLLDHIRKGNTDLGGVRYLVLDEVDEMLQQGFMDEALELIAMTAPEHQTML 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+++E++K+     +N   I++N   +T E I            +        L  +
Sbjct: 182 CSATLSEEVRKLGRKLTKNCALIDINPDQATVEKI---KQVCLKTTDEYKNKAVAALIDR 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+FC  K+    L   L  QG++V  +HG +    R  ++  F++  IQ++VAS
Sbjct: 239 LNPYLMIVFCMSKERTKELGDWLGMQGYNVDVLHGEMSPAKRKTVMKAFRDAKIQILVAS 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARGLD+  V HV N+D+P+  + Y+HRIGRTGRAG  G+A TL   +++K +  IE 
Sbjct: 299 DLAARGLDVEGVTHVVNYDIPHDVDWYVHRIGRTGRAGNEGEAITLYTADEVKWLRNIET 358

Query: 363 ----LIEKK 367
               L+E++
Sbjct: 359 KLGILMERQ 367


>gi|259047162|ref|ZP_05737563.1| DEAD/DEAH box family ATP-dependent RNA helicase [Granulicatella
           adiacens ATCC 49175]
 gi|259036212|gb|EEW37467.1| DEAD/DEAH box family ATP-dependent RNA helicase [Granulicatella
           adiacens ATCC 49175]
          Length = 462

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 123/413 (29%), Positives = 199/413 (48%), Gaps = 16/413 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P +  A+ D  + +PTPIQ + IPL+L+   V G +QTG+GK+ SF+LP++
Sbjct: 29  MKFTDYALQPYLQKALADLKFTQPTPIQERIIPLLLKGESVIGQSQTGSGKSHSFLLPLI 88

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  R  +++  T+      E    VA     +     L    + G        K  +
Sbjct: 89  NKIDPSRQELQLVITVPSRELAEQLTAVAAQLITFSDTEILLEKCIGGTDKKRQVAKLTQ 148

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGRI D      L +  ++++V+DEAD   D+GF+  +  I S +P   Q 
Sbjct: 149 TQPHIVIGTPGRIFDLMQENALFVQTVQMMVVDEADMTFDLGFLETVDEIASRMPENLQM 208

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT+ D+++   + +L NPK I++      + TI           ++    + + L 
Sbjct: 209 SVFSATIPDKIRPFLKKYLGNPKVIQIENTQLVSPTI---KNQLLVTKAQNPMDVLRQLL 265

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF N K+    +   L    F V  IHG+I  R R +++   ++   Q +V
Sbjct: 266 VMGHPYLVLIFVNTKQKADEVTKDLRNHNFKVATIHGDIPSRERRRVMKQIQQMDYQFVV 325

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI  V HV N ++P   E +IHR+GRTGR G  G A T    +  + I  +
Sbjct: 326 ATDLAARGIDIEGVSHVINLEIPGELEFFIHRVGRTGRNGLEGTAITFYTPDQEQAIQTL 385

Query: 361 E-KLIE-KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           E K I  + V+  NG+L           +  ++ +R+      +S   D R K
Sbjct: 386 EGKGISFETVELKNGEL-----------VESYDRSRREKRKNTQSKDLDPRLK 427


>gi|254523078|ref|ZP_05135133.1| ATP-independent RNA helicase DbpA [Stenotrophomonas sp. SKA14]
 gi|219720669|gb|EED39194.1| ATP-independent RNA helicase DbpA [Stenotrophomonas sp. SKA14]
          Length = 458

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 122/402 (30%), Positives = 198/402 (49%), Gaps = 8/402 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ L LSP +   +   GY   TP+Q +++P +L   DV   A TG+GKTA+F L +L 
Sbjct: 3   DFSTLPLSPALQPGLDALGYTTLTPVQAQSLPAILDGRDVIAQAPTGSGKTAAFGLGLLQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    RV+                        G      + L+ G             
Sbjct: 63  AIDPSLIRVQALVLC-PTRELADQVGKQIRKLATGIPNLKLLLLVGGVPLGPQLASLEGH 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+ +   +  L +  +  LV+DEADRMLDMGF   I+ I       RQ+L
Sbjct: 122 DPHVVVGTPGRVQELARKRALNLGAVRTLVLDEADRMLDMGFEEPIREIAGRTHKDRQSL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D ++ ++ + L++   + V                  A   K  A L      
Sbjct: 182 LFSATFPDSIRAMARDLLRDAVEVTVEGADQAPAIRHLFCEVEPAHRQKALAGLLL---- 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T ++ ++FCN +K+V  + +SL++ GFS  A+HG+++QR R ++L      +  ++VA
Sbjct: 238 KYTPESAVVFCNTRKDVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRSCNVLVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLD+ ++  V N+++P   E+Y HR+GRTGRAG  G A +LVA  +    +AIE
Sbjct: 298 SDVAARGLDVEELAAVINYELPTDVESYQHRVGRTGRAGASGLAISLVAGREKSRAEAIE 357

Query: 362 KLIEKKVDWLNGDLSSLNP---PLEKIDIAQHNHARKNNPIP 400
             + + +DW    L++  P   P   +   + +  + +   P
Sbjct: 358 AQMGQPLDWQKTPLATSRPAELPQAAMRTLRIDGGKTDKLRP 399


>gi|107027331|ref|YP_624842.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia AU 1054]
 gi|105896705|gb|ABF79869.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia AU 1054]
          Length = 465

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 155/422 (36%), Positives = 227/422 (53%), Gaps = 24/422 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GYV  TPIQ  ++P+ L   D+   A+TG+GKTA+F L +L  
Sbjct: 9   FSALPLTPATLANLAQLGYVDMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLAR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + +IL PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 69  LDA---RSFDVQAMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  + P TRQTL
Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL+NPK I++      ++         Y     +       L +
Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEIKLAERHDDSKI----RQRFYEVTEDERLHAVGQLLN 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 242 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGAIE 361

Query: 362 KLIEKKVDW------LNGDLSSLNPPLEKIDIAQHNHARKNNPIP-------QKSTGFDR 408
           +  +++V+W         D S L PP+E + I      RK+   P           GFD 
Sbjct: 362 QAQKREVEWHPLAELKPADDSVLLPPMETLQIL---GGRKDKIRPGDVLGALTGDAGFDG 418

Query: 409 RK 410
           ++
Sbjct: 419 KQ 420


>gi|310798110|gb|EFQ33003.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 607

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 122/410 (29%), Positives = 208/410 (50%), Gaps = 12/410 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA L LS K + A+ + G+ K T IQ + IP +L   DV G A+TG+GKT +F++P + 
Sbjct: 129 DFAQLNLSEKTMTAIKEMGFTKMTEIQRRGIPPLLSGKDVLGAAKTGSGKTLAFLIPAVE 188

Query: 62  ILEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + R    +I+  PTRELA Q+     +   +++ T  ++IGG    A+  KL+
Sbjct: 189 MLHALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEADKLQ 248

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G ++LI TPGR+LDH      +  N++ L+IDEADR+L++GF   ++ I  ++P   + 
Sbjct: 249 KGVNLLIATPGRLLDHLQNTPFVFKNLKSLIIDEADRILEIGFEDEMRQIVKILPKDDRQ 308

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSAT T +++ ++   L+               T+E+         + K  LL    
Sbjct: 309 TMLFSATQTTKVEDLARISLRPGPLYVNVDEQKQHSTVENLEQGYVICDADKRFLLLFSF 368

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  I+F +   +V      L      V  +HG   Q+ R      F       +
Sbjct: 369 LKRNLKKKVIVFFSSCNSVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGTL 428

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKHID 358
           + +D+AARGLDIP V  +   D P+   +YIHR+GRT R A   G++   +   ++  + 
Sbjct: 429 ICTDVAARGLDIPAVDWIVQVDPPDDPRDYIHRVGRTARGANSKGRSLMFLQPSEVGFLT 488

Query: 359 AIEKLIEKKVDWLNGD-----LSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
            ++   E +V  +  D     ++++   LEK+ I+Q+ +  K+     +S
Sbjct: 489 HLK---EARVPVVEFDFPANKIANIQSLLEKL-ISQNYYLNKSAKDGYRS 534


>gi|258423211|ref|ZP_05686104.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A9635]
 gi|257846661|gb|EEV70682.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A9635]
          Length = 448

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 133/450 (29%), Positives = 220/450 (48%), Gaps = 15/450 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ + IP +L+R ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNKKLER 121
           ++     ++ P+ +++ PTRELA Q+ D      +        + IGG   E   ++   
Sbjct: 66  IDS---EIKEPQAIVVAPTRELAQQLYDAANHISQFKAGVSVEVFIGGTDIEKDRQRCNA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L ++    LVIDEAD M+D+G I  +  I + +       
Sbjct: 123 QPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNANIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +LQ     +L +P+ + V++     + IE   + T      +  L       
Sbjct: 183 VFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPTKGAAKVEKTLNL---ID 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFCN + N  +L  SL + G  V  IHG +  R R + +   +    Q ++A
Sbjct: 240 ILNPYLCIIFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYVIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  IE
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 362 K--LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-----KKNYS 414
               +   VD  +G+L  +    ++    + +    N    +  +    +     KK + 
Sbjct: 360 DRGFVFNTVDIKDGELKEVKAHNQRQARMRKDDHLTNQVKNKVRSKIKNKVKPGYKKKFK 419

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLG 444
            +   +  +E ++ SK QQ+ Q+   +  G
Sbjct: 420 QEVEKMKRQERKQFSK-QQNRQKRKQNKKG 448


>gi|49483807|ref|YP_041031.1| helicase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425683|ref|ZP_05602107.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257428344|ref|ZP_05604742.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430981|ref|ZP_05607361.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257433669|ref|ZP_05610027.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436583|ref|ZP_05612627.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282904140|ref|ZP_06312028.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus C160]
 gi|282905967|ref|ZP_06313822.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282908877|ref|ZP_06316695.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282911196|ref|ZP_06318998.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282914365|ref|ZP_06322151.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M899]
 gi|282919334|ref|ZP_06327069.1| helicase [Staphylococcus aureus subsp. aureus C427]
 gi|282924659|ref|ZP_06332327.1| helicase [Staphylococcus aureus subsp. aureus C101]
 gi|283958322|ref|ZP_06375773.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293510456|ref|ZP_06669162.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus M809]
 gi|293530996|ref|ZP_06671678.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M1015]
 gi|295428136|ref|ZP_06820768.1| helicase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590898|ref|ZP_06949536.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|49241936|emb|CAG40630.1| putative helicase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257271377|gb|EEV03523.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257275185|gb|EEV06672.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278411|gb|EEV09047.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257281762|gb|EEV11899.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283934|gb|EEV14057.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282313494|gb|EFB43889.1| helicase [Staphylococcus aureus subsp. aureus C101]
 gi|282317144|gb|EFB47518.1| helicase [Staphylococcus aureus subsp. aureus C427]
 gi|282321546|gb|EFB51871.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M899]
 gi|282324891|gb|EFB55201.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282327141|gb|EFB57436.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282331259|gb|EFB60773.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282595758|gb|EFC00722.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus C160]
 gi|283790471|gb|EFC29288.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|290920264|gb|EFD97330.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291466820|gb|EFF09340.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus M809]
 gi|295128494|gb|EFG58128.1| helicase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575784|gb|EFH94500.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312437973|gb|ADQ77044.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195460|gb|EFU25847.1| putative helicase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 448

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 132/450 (29%), Positives = 221/450 (49%), Gaps = 15/450 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ + IP +L+R ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNKKLER 121
           ++     ++ P+ +++ PTRELA Q+ D      +        + IGG   E   ++   
Sbjct: 66  IDS---EIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRCNA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L ++    LVIDEAD M+D+G I  +  I + +       
Sbjct: 123 QPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNANIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+ ++LQ     +L +P+ + V++     + IE   + T      +  L       
Sbjct: 183 VFSATIPEQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPTKGAAKVEKTLNL---ID 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+FCN + N  +L  SL + G  V  IHG +  R R + +   +    Q ++A
Sbjct: 240 ILNPYLCIVFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYVIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  IE
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 362 K--LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-----KKNYS 414
               +   VD  +G+L  +    ++    + +    N    +  +    +     KK + 
Sbjct: 360 DRGFVFNTVDIKDGELKEVKAHNQRQARMRKDDHLTNQVKNKVRSKIKNKVKPGYKKKFK 419

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLG 444
            +   +  +E ++ SK QQ+ Q+   +  G
Sbjct: 420 QEVEKMKRQERKQFSK-QQNRQKRKQNKKG 448


>gi|15924548|ref|NP_372082.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927138|ref|NP_374671.1| hypothetical protein SA1387 [Staphylococcus aureus subsp. aureus
           N315]
 gi|156979876|ref|YP_001442135.1| hypothetical protein SAHV_1545 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|255006344|ref|ZP_05144945.2| hypothetical protein SauraM_07745 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|13701356|dbj|BAB42650.1| SA1387 [Staphylococcus aureus subsp. aureus N315]
 gi|14247329|dbj|BAB57720.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156722011|dbj|BAF78428.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
          Length = 448

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 133/450 (29%), Positives = 220/450 (48%), Gaps = 15/450 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ + IP +L+R ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNKKLER 121
           ++     ++ P+ +++ PTRELA Q+ D      +        + IGG   E   ++   
Sbjct: 66  IDS---EIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRCNA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L ++    LVIDEAD M+D+G I  +  I + +       
Sbjct: 123 QPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNANIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +LQ     +L +P+ + V++     + IE   + T      +  L       
Sbjct: 183 VFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPTKGAAKVEKTLNL---ID 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFCN + N  +L  SL + G  V  IHG +  R R + +   +    Q ++A
Sbjct: 240 ILNPYLCIIFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYVIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  IE
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 362 K--LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-----KKNYS 414
               +   VD  +G+L  +    ++    + +    N    +  +    +     KK + 
Sbjct: 360 DRGFVFNTVDIKDGELKEVKAHNQRQARMRKDDHLTNQVKDKVRSKIKNKVKPGYKKKFK 419

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLG 444
            +   +  +E ++ SK QQ+ Q+   +  G
Sbjct: 420 QEVEKMKRQERKQFSK-QQNRQKRKQNKKG 448


>gi|168042111|ref|XP_001773533.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675235|gb|EDQ61733.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 600

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 134/391 (34%), Positives = 206/391 (52%), Gaps = 15/391 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA++ L P +   +    Y KPTP+Q   IP+ L   D+   AQTG+GKTA+F  P++ 
Sbjct: 146 TFAEIDLGPALNENIRRCKYTKPTPVQKYAIPISLHGRDLMACAQTGSGKTAAFCFPIIA 205

Query: 62  ILEKGRA-------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            + +          R  +P  LIL PTREL+ Q++D  +K+     + V +  GG P   
Sbjct: 206 GIMRNTPPGRPRGGRKALPLALILSPTRELSCQISDEAKKFAYQTGIRVVVAYGGAPVHN 265

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q +++ERG D+L+ TPGR+ D   R ++ ++ +  L +DEADRMLDMGF P I+ I   +
Sbjct: 266 QLREMERGVDILVATPGRLSDLLERARVSLSMVRYLALDEADRMLDMGFEPQIRRIVEQM 325

Query: 175 PFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                   QT+LFSAT   E+Q+++ +FL N   + V    S+ + I            +
Sbjct: 326 DMPPAGERQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQDVDKR 385

Query: 231 KCALLQQLLQ----SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              +     Q            ++F   KK    L   L + GF    IHG+  Q+ R  
Sbjct: 386 SMLMDLIHAQSALAPPGQQTLTLVFVETKKGADALEDWLCRLGFPATTIHGDRSQQEREH 445

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L +F+ G   ++VA+D+AARGLDIP V HV NFD+P+  ++Y+HRIGRTGRAG+ G A 
Sbjct: 446 ALRSFRTGVTPILVATDVAARGLDIPHVAHVVNFDLPSDIDDYVHRIGRTGRAGKSGVAT 505

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
               ++D      + +L+ +    + G L++
Sbjct: 506 AFFNEKDQALARPLTELMTESNQEVPGWLTN 536


>gi|212537643|ref|XP_002148977.1| ATP dependent RNA helicase (Dbp1), putative [Penicillium marneffei
           ATCC 18224]
 gi|210068719|gb|EEA22810.1| ATP dependent RNA helicase (Dbp1), putative [Penicillium marneffei
           ATCC 18224]
          Length = 692

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 134/397 (33%), Positives = 207/397 (52%), Gaps = 22/397 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+  
Sbjct: 197 TFTNPPLDDHLIANIALARYTTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILS 256

Query: 60  --------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105
                               GR R   P +LIL PTREL +Q+ D   K+     +   +
Sbjct: 257 QAFQTGPSAAPAPAAGGNFYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCV 316

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P
Sbjct: 317 VYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLTNIKYLVLDEADRMLDMGFEP 376

Query: 166 YIQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
            I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I    
Sbjct: 377 QIRRIVEGEDMPQVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQRI 436

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
                   +       +L +  +    +IF   K+   +LC  L  Q F   AIHG+  Q
Sbjct: 437 EYVEDHDKRSVL--LDILHTHGSTGLTLIFVETKRMADSLCDFLINQNFPATAIHGDRTQ 494

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R R + L  F+     ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG 
Sbjct: 495 RERERALEMFRNARCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGN 554

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            G A     + +   +  +  L+++    +   L ++
Sbjct: 555 TGIATAFFNRGNRGVVRDLIDLLKEANQEVPSFLENI 591


>gi|108763762|ref|YP_633382.1| ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK 1622]
 gi|108467642|gb|ABF92827.1| ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK 1622]
          Length = 423

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 141/419 (33%), Positives = 217/419 (51%), Gaps = 16/419 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLS  +  AV   GY +PTP+Q  TIP+VL+  DV   A+TG+GKTA+F+LP+L
Sbjct: 1   MTFASLGLSDALTRAVAGLGYDEPTPVQRATIPVVLRGGDVWASAKTGSGKTAAFLLPIL 60

Query: 61  TILEKGRARVRMPRT-LILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNK 117
             L         P    IL PTRELAAQ+ D+ ++YG++        L +GG+    Q  
Sbjct: 61  EALRARPGGSVRPVRAFILVPTRELAAQIVDSIQRYGQHLKKPLKTCLAVGGVSANPQML 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GAD+++ TPGR LD  ++  L ++ +E LV+DEADR+  +GF   + ++ +L+P  
Sbjct: 121 ALRGGADIVVATPGRALDLVHQNALRLDQVETLVLDEADRLFSLGFADELNSLLALLPTR 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT    ++K +E  L  P RI+V+     +               +   +L +
Sbjct: 181 RQNLLFSATFPPAVRKFAEQLLHEPTRIDVDDGELPSTEFILQRALQVDVPRR--TMLLR 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L       + + F   +    ++   L + G    ++HG + Q +R + L++FK   ++
Sbjct: 239 HLLETHAWSHVLTFVASRYTADHVALKLNRAGIVATSLHGELSQGARTRALADFKAKRVR 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  +  V N+D+P    +Y+HRIGRTGRAG  G A + V+     H 
Sbjct: 299 VLVATDVAARGLDIAQLPAVVNYDLPRSTADYVHRIGRTGRAGDKGVAISFVSAGTEAHF 358

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
             IEK    ++D     +    P  E              P    + G   R+K+   +
Sbjct: 359 RLIEK--RHQLDLPREQVPGFEPTEE---------VSTTTPPRDPNGGVKGRRKSKKDK 406


>gi|207080270|ref|NP_001128971.1| probable ATP-dependent RNA helicase DDX6 [Pongo abelii]
 gi|75062071|sp|Q5RFQ5|DDX6_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX6; AltName:
           Full=DEAD box protein 6
 gi|55725069|emb|CAH89402.1| hypothetical protein [Pongo abelii]
          Length = 483

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 110/377 (29%), Positives = 195/377 (51%), Gaps = 8/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 97  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+    +    + +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 157 RLDL---KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRGDIMRLD 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 214 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK    F+ +  +           T++           ++       L 
Sbjct: 274 LLYSATFPLSVQK----FMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLF 329

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 330 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 389

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIG +GR G  G A  L+  +D  ++ +I
Sbjct: 390 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGGSGRFGHLGLAINLITYDDRFNLKSI 449

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +  ++  
Sbjct: 450 EEQLGTEIKPIPSNIDK 466


>gi|84385240|ref|ZP_00988272.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus 12B01]
 gi|84379837|gb|EAP96688.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus 12B01]
          Length = 459

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 145/460 (31%), Positives = 243/460 (52%), Gaps = 19/460 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ + L P+++  +   GY + TPIQ  ++P +L   DV G  +TG+GKTA+F L +L 
Sbjct: 5   KFSSIALKPELLNTLDSLGYTEMTPIQALSLPTILDGKDVIGQGKTGSGKTAAFGLGVLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            L   R RV+    L+L PTRELA QVA       +  +    L + G +P   Q   LE
Sbjct: 65  NLRVKRFRVQS---LVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH  R ++ ++ +  LV+DEADRML+MGF   +  +    P  RQT
Sbjct: 122 HGAHILVGTPGRILDHLERERIDLSELNTLVLDEADRMLEMGFQDALDAVIEAAPKDRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT   +++ V++  + NP+ ++V +    +   +H +     +         +L+ 
Sbjct: 182 LLFSATFPKQIKSVADRIMNNPEMVKVESTHDHSSIQQHFYKVEGTEARDDA---LELML 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++FCN KK V N+   L  +GFSV  +HG+++QR R + L  F   TI ++V
Sbjct: 239 LHHQPESAVVFCNTKKEVQNVNDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G A +  +++++  +  I
Sbjct: 299 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAISFFSEKEMHRVAQI 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE------KIDIAQHNHARKNNPIP--QKSTGFDRR--- 409
           ++ ++  ++        +  P        +ID  +    R  + +       G D +   
Sbjct: 359 DEYMDMPIEPSQLPAKPIAKPYYSNMVTIQIDGGKKAKLRAGDILGALTGQGGIDGKSVG 418

Query: 410 KKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNM 449
           K N  + ++++ ++ S     L + I+        FR  +
Sbjct: 419 KINLFAMRAYVAVERSMAKKALGK-IESGKMKGRQFRARI 457


>gi|224135589|ref|XP_002322111.1| predicted protein [Populus trichocarpa]
 gi|222869107|gb|EEF06238.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 137/424 (32%), Positives = 217/424 (51%), Gaps = 32/424 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A+  LS +++ AV    Y KP+PIQ+  IPL LQ+ DV GIA+TG+GKT +FVLPMLT
Sbjct: 291 SWAESKLSSELLKAVERVVYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTCAFVLPMLT 350

Query: 62  I-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                           P  +++ PTRELA Q+ D   K+     + V  ++GG   E Q 
Sbjct: 351 YISRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQG 410

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP- 175
            ++ +G +V+I TPGR++D   R   ++N    +V+DEADRM+DMGF P +  +   +P 
Sbjct: 411 FRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPS 470

Query: 176 ----------------FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
                             R T +FSATM   +++++  +L+NP  + + T     +  + 
Sbjct: 471 SNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGT---AGKATDL 527

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                      + +     L  +   K  I+F N KKN   +  +L+K G+ V  +HG  
Sbjct: 528 ISQHVIMTKESEKSSRLHRLLDELGDKTAIVFVNTKKNADMVAKNLDKHGYRVTTLHGGK 587

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q  R   L  F+     ++VA+D+A RG+DIPDV HV N+D+P   E Y HRIGRTGRA
Sbjct: 588 SQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRA 647

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           G+ G A T +   D      +++++ +         SS+ P L + + ++       +  
Sbjct: 648 GKTGVASTFLTLGDTDVFYDLKQMLIQS-------NSSVPPELARHEASKFKPGTIPDRP 700

Query: 400 PQKS 403
           P+++
Sbjct: 701 PRRN 704


>gi|123509953|ref|XP_001329985.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121913036|gb|EAY17850.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 402

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 121/407 (29%), Positives = 209/407 (51%), Gaps = 11/407 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  LG+ P ++ AV   G+ KPTPIQ KTI   +   DV G A+TG+GKT +F++P+L
Sbjct: 1   MDFQALGVHPDIIAAVESMGWSKPTPIQEKTIKQAIAGEDVSGAAETGSGKTGAFLIPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +     +    +IL PTREL  Q+A+  +      N+T+  + GG+    Q  +L 
Sbjct: 61  HQLLEKDRPEKYG--IILAPTRELVIQIAEVAQLMSAKLNITIVPIYGGVDDVEQMAQLA 118

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   +++ TPGR+       K      + ++VIDEAD+M  + F   I  ITS    T Q
Sbjct: 119 KRPHIIVATPGRLAQLIRDAKGFDLKPVRVIVIDEADKMAAVEFFDDISVITSNCAKTHQ 178

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM  +L+K +  + +    +E+ +     + ++   + +     +   +     
Sbjct: 179 IMLFSATMPKDLEKFTALYSKKASIVELTSEKQVPQALQEYMLTSPKSQKEATLVALLHH 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   IIF +  +    L  +LEK  F+V +  G + Q  R + +  F+E  I+++
Sbjct: 239 FETSQI---IIFVSGVREATILTMTLEKMNFAVGSATGGMSQFDREEQVQKFRENKIRIL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+ +  RG+DIP++  V N+D+P+  + YIHR GR GRA + G A T V  E ++    
Sbjct: 296 VATKVVGRGVDIPNIDVVVNYDLPDNGKEYIHRAGRAGRALKSGIAITFVTMESLQKYQD 355

Query: 360 IEKLIEKKVDWLNGD----LSSLNPPLEK-IDIAQHNHARKNNPIPQ 401
           +EK +++++     D    +  ++  LE+  ++A   + + +  I  
Sbjct: 356 LEKYLKRELPKFEFDKEKKIQEISKDLEEAHELAVEKYKKLSRGIKD 402


>gi|283470836|emb|CAQ50047.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 448

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 133/450 (29%), Positives = 220/450 (48%), Gaps = 15/450 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ + IP +L+R ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNKKLER 121
           ++     ++ P+ +++ PTRELA Q+ D      +        + IGG   E   ++   
Sbjct: 66  IDS---EIKEPQAIVVAPTRELAQQLYDAANHLSQFKADVSVKVFIGGTDIEKDRQRCNA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L ++    LVIDEAD M+D+G I  +  I + +       
Sbjct: 123 QPQLIIGTPTRINDLAITGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNANIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +LQ     +L +P+ + V++     + IE   + T      +  L       
Sbjct: 183 VFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPTKGAAKVEKTLNL---ID 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFCN + N  +L  SL + G  V  IHG +  R R + +   +    Q ++A
Sbjct: 240 ILNPYLCIIFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYVIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  IE
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 362 K--LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-----KKNYS 414
               +   VD  +G+L  +    ++    + +    N    +  +    +     KK + 
Sbjct: 360 DRGFVFNTVDIKDGELKEVKAHNQRQARMRKDDHLTNQVKNKVRSKIKNKVKPGYKKKFK 419

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLG 444
            +   +  +E ++ SK QQ+ Q+   +  G
Sbjct: 420 QEVEKMKRQERKQFSK-QQNRQKRKQNKKG 448


>gi|164423323|ref|XP_964893.2| ATP-dependent RNA helicase [Neurospora crassa OR74A]
 gi|157070045|gb|EAA35657.2| ATP-dependent RNA helicase [Neurospora crassa OR74A]
          Length = 434

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 151/375 (40%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q   IP  +   D+   A++G GKTA FVL  L  
Sbjct: 52  FRDFLLKPELLRAIADCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQ 111

Query: 63  LEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +E   G   V +         +        +         +           E    K  
Sbjct: 112 VEPVAGECSVLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEVLKNKET 171

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++           ++   L +    ++ +    +  +     +Q I    P  +Q 
Sbjct: 172 HPHIIVGTPGRLNALVRDKHLRLGSVRMFVLDECDKMLDQIDMRRDVQEIFRATPQQKQV 231

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++DE++ +   F+QNP    V+  +         +     +  K   L +    
Sbjct: 232 MMFSATLSDEIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIPLEEREKNRKLNEL--L 289

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      IIF         L   L +  F   A+H  + Q  R++    FKE   ++ V
Sbjct: 290 DELQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICV 349

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+  RG+DI  +    N+D+P  A++Y+HR+GR GR G  G A + V  + D + + A
Sbjct: 350 ATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVTTDQDKEVLKA 409

Query: 360 IEKLIEKKVDWLNGD 374
           IEK  E  +     +
Sbjct: 410 IEKRFEVALPEFPKE 424


>gi|154509558|ref|ZP_02045200.1| hypothetical protein ACTODO_02090 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799192|gb|EDN81612.1| hypothetical protein ACTODO_02090 [Actinomyces odontolyticus ATCC
           17982]
          Length = 581

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 146/418 (34%), Positives = 221/418 (52%), Gaps = 19/418 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD G++  +V A+ D G   P PIQ  T+   L+RHD+ G A+TGTGKT  F +P+L 
Sbjct: 64  SFADFGVTDPIVDALEDQGITHPFPIQALTLGPALERHDIIGQAKTGTGKTLGFGIPVLE 123

Query: 62  ILEKGRAR-------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ LI+ PTREL  QVA +  +  K  +  +  + GG+ FE 
Sbjct: 124 DVIAPDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLREAAKYLSTRIVEIYGGVAFEP 183

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERGAD+++ TPGR++D   +G L ++ +E +V+DEAD MLD+GF+P ++ + S V
Sbjct: 184 QIEALERGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVETLLSRV 243

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  R T+LFSATM   +  ++  F+  P  I    P    +T+       Y  ++     
Sbjct: 244 PENRHTMLFSATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNTVKQVIYRVHAMNKVE 303

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +   +     +IFC  K+    L   L  +GF+V ++HG++ Q +R + L  F+ G
Sbjct: 304 VVARILQAEGRGRTVIFCRTKRTAARLGEDLTARGFAVGSLHGDLGQGAREQALRAFRNG 363

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+  P   + YIHRIGRTGRAG  G A T V  +D 
Sbjct: 364 KVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGNSGTAVTFVDWDDT 423

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
                I K +             +  PLE    + H     +  IP+ +TG   R K 
Sbjct: 424 PRWSLISKALGL----------GVPDPLETYHTSPHLFTDLH--IPEGTTGRLPRAKR 469


>gi|319427184|gb|ADV55258.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 413

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 168/420 (40%), Positives = 242/420 (57%), Gaps = 14/420 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L+  +V  + + GY  PTPIQ + IP++L + DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFSSLSLNATLVNTITELGYSLPTPIQSEAIPVILAKQDVMAGAQTGTGKTAAFALPIL 60

Query: 61  T-----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +E+   RV+  + L+L PTRELA QV  +F KY KN ++ + +  GG+  +AQ
Sbjct: 61  HLLMAKNVEQKAERVKTVQALVLVPTRELAVQVHQSFVKYAKNTDIRIGIAYGGVSIDAQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
               + G DVLI TPGR+LDH  +G L +N +  LV DEADRMLDMGF+  I  +   VP
Sbjct: 121 VDVFKTGIDVLIATPGRLLDHLRQGVLNLNQLTTLVFDEADRMLDMGFMDEINAVLKQVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT+ D + ++S++ L+ PK IEV   ++TA  +       YA  S +    
Sbjct: 181 KDRQTLLFSATLDDAIFELSKSLLREPKLIEVTKRNTTAAQV---EQRVYAIDSDRKTEF 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L   +     +IF   K+ V  L   L K      A HG++ Q +R K+L  FK G 
Sbjct: 238 VSHLIRSNHWHQVLIFSRTKQGVDRLVQQLNKLSIVTHAFHGDLSQGAREKVLQAFKLGN 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           IQ++VA+D+AARGLDI ++ +V NF++P  AE+YIHRIGRTGRAG  G A TL ++ED  
Sbjct: 298 IQVLVATDVAARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDTL 357

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            ++ +E +++K++   W  G      P   K++     + +       K   F  +K + 
Sbjct: 358 LLEEVEVVLDKRLPQQWYPG----FEPDFNKMEPEPRRNGKAAQKQRAKKRAFGSKKPSR 413


>gi|320037247|gb|EFW19185.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Coccidioides
           posadasii str. Silveira]
          Length = 853

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 133/438 (30%), Positives = 216/438 (49%), Gaps = 18/438 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL  + +  +   GY +PT IQ + IP ++   DV G+A+TG+GKT +F+LPM  
Sbjct: 216 KWSQCGLGVQTLDVIRKLGYEQPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFR 275

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++  R    +  P  LI+ PTRELA Q+    + + K  NL      GG P + Q  +L
Sbjct: 276 HIKDQRPLENMEGPVGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAEL 335

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I S +  
Sbjct: 336 KRGAEIIVCTPGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIISNIRP 395

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           +RQT+LFSAT    ++ ++   L  P  I V   S  A+ I                L  
Sbjct: 396 SRQTVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAQEITQIVEVRPENTKFVRLLEL 455

Query: 237 ---QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                    +     +IF ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 456 LGNLYSDDNNEDARALIFVDRQEAADGLLRDLMRKGYPCMSIHGGKDQVDRDSTIDDFKA 515

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + +E 
Sbjct: 516 GIFPVLIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQ 575

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            ++   I K +++    +   +  + +  LEK+         K+      ++GF  +   
Sbjct: 576 ERYSVDIAKALKQSGQSVPEAVQKMVDSFLEKV---------KSGKEKASASGFGGKGLE 626

Query: 413 YSSQKSHIPLKESEKISK 430
              Q+         K  K
Sbjct: 627 RLDQERDAARNRERKTYK 644


>gi|289742973|gb|ADD20234.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
          Length = 616

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 128/382 (33%), Positives = 207/382 (54%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF++      V+  +   GY  PTPIQ +  P+ +  H+  GIA+TG+GKT  ++LP + 
Sbjct: 134 DFSEAYFPDYVMKEIKRQGYKVPTPIQAQGWPIAMSGHNFVGIAKTGSGKTLGYILPAIV 193

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   +   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 194 HINNQQPLSRGEGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 253

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D    G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 254 QRGCEIVIATPGRLIDFLAAGATNLKRCTYLVLDEADRMLDMGFEPQIRKILSQIRPDRQ 313

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL---Q 236
           TL++SAT   E+++++E+FL N  +I + +   +A       +    +  K+  L     
Sbjct: 314 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVIEICDENDKETKLKSLLS 373

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q+  + +     IIF   K+ V +L   +   G    AIHG+  Q  R  +L  F+ G  
Sbjct: 374 QIYDTGENPGKIIIFVETKRRVDHLVRYIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 433

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G ++    + + K 
Sbjct: 434 NILVATDVAARGLDVDGIKYVINFDYPQSSEDYIHRIGRTGRSNTKGTSYAFFTRNNAKQ 493

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
             A+ +++++    +   L S+
Sbjct: 494 SKALLEVLKEANQEICPGLESM 515


>gi|303324443|ref|XP_003072209.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240111919|gb|EER30064.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5, putative
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 1197

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 133/438 (30%), Positives = 216/438 (49%), Gaps = 18/438 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL  + +  +   GY +PT IQ + IP ++   DV G+A+TG+GKT +F+LPM  
Sbjct: 560 KWSQCGLGVQTLDVIRKLGYEQPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFR 619

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++  R    +  P  LI+ PTRELA Q+    + + K  NL      GG P + Q  +L
Sbjct: 620 HIKDQRPLENMEGPVGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAEL 679

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I S +  
Sbjct: 680 KRGAEIIVCTPGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIISNIRP 739

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           +RQT+LFSAT    ++ ++   L  P  I V   S  A+ I                L  
Sbjct: 740 SRQTVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAQEITQIVEVRPENTKFVRLLEL 799

Query: 237 ---QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                    +     +IF ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 800 LGNLYSDDNNEDARALIFVDRQEAADGLLRDLMRKGYPCMSIHGGKDQVDRDSTIDDFKA 859

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + +E 
Sbjct: 860 GIFPVLIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQ 919

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            ++   I K +++    +   +  + +  LEK+         K+      ++GF  +   
Sbjct: 920 ERYSVDIAKALKQSGQSVPEAVQKMVDSFLEKV---------KSGKEKASASGFGGKGLE 970

Query: 413 YSSQKSHIPLKESEKISK 430
              Q+         K  K
Sbjct: 971 RLDQERDAARNRERKTYK 988


>gi|142982571|sp|P0C2N7|DRS1_CHAGB RecName: Full=ATP-dependent RNA helicase DRS1
          Length = 795

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 142/469 (30%), Positives = 221/469 (47%), Gaps = 33/469 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++  +   G+ KPTPIQ KTIP+ L   DV G A TG+GKTA+FV+P+L 
Sbjct: 277 SFQGMSLSRPILRGLTSVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTAAFVVPILE 336

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R ++L PTRELA Q      K   + ++   L +GG+  + Q  +L  
Sbjct: 337 RLLYRPKKVPTTRVVVLTPTRELAIQCHSVATKLASHTDIKFCLAVGGLSLKVQEGELRL 396

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        +  +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 397 RPDVVIATPGRFIDHMRNSASFAVETVEILVLDEADRMLEDGFADELNEILTTLPKSRQT 456

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT  + K+    L  P RI V++   TA T+   FV       +K         
Sbjct: 457 MLFSATMTSTVDKLIRVGLNKPARIMVDSQKQTAVTLAQEFVRLRPGREEKRMGYLGPYL 516

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +      +        C           A       +         ++G +  ++
Sbjct: 517 QDPVHRTS----HYLLQAEEDCSPDPDHLRLAGAFEHRAPWKHEPGSAF--RDGKVNYLL 570

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA- 359
           A+DLA+RGLDI  +  V N++ P   E Y+HR+GRT RAGR G A TL A+ D K + A 
Sbjct: 571 ATDLASRGLDIKGIDTVINYEAPQSLEIYVHRVGRTARAGRSGVAITLAAEPDRKVVKAA 630

Query: 360 -----------IEKLIEK--------KVDWLNGDLSS-LNPPLEKIDIAQ--HNHARKNN 397
                      I ++I+         ++D ++ ++   L    E+  +AQ      +  N
Sbjct: 631 VRAGKAQGAKIISRVIDAADADKWQDQIDEMDDEIDEILQEEKEEKQLAQIEMQVKKGEN 690

Query: 398 PIPQKSTGFDRRKKN-YSSQKSHIPLKE--SEKISKLQQDIQENDADSL 443
            I  +     R K+  + +Q+     KE    +++ ++  +++  A  L
Sbjct: 691 LIKHEEEIHARPKRTWFETQEDKKKAKELGRAELNGVRDAMKKKGAGRL 739


>gi|119173770|ref|XP_001239279.1| DEAD/DEAH box RNA helicase [Coccidioides immitis RS]
 gi|118597491|sp|Q1DHB2|PRP5_COCIM RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
          Length = 1197

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 133/438 (30%), Positives = 216/438 (49%), Gaps = 18/438 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL  + +  +   GY +PT IQ + IP ++   DV G+A+TG+GKT +F+LPM  
Sbjct: 560 KWSQCGLGVQTLDVIRKLGYEQPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFR 619

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++  R    +  P  LI+ PTRELA Q+    + + K  NL      GG P + Q  +L
Sbjct: 620 HIKDQRPLENMEGPVGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAEL 679

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I S +  
Sbjct: 680 KRGAEIIVCTPGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIISNIRP 739

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           +RQT+LFSAT    ++ ++   L  P  I V   S  A+ I                L  
Sbjct: 740 SRQTVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAQEITQIVEVRPENTKFVRLLEL 799

Query: 237 ---QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                    +     +IF ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 800 LGNLYSDDNNEDARALIFVDRQEAADGLLRDLMRKGYPCMSIHGGKDQVDRDSTIDDFKA 859

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + +E 
Sbjct: 860 GIFPVLIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQ 919

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            ++   I K +++    +   +  + +  LEK+         K+      ++GF  +   
Sbjct: 920 ERYSVDIAKALKQSGQSVPEAVQKMVDSFLEKV---------KSGKEKASASGFGGKGLE 970

Query: 413 YSSQKSHIPLKESEKISK 430
              Q+         K  K
Sbjct: 971 RLDQERDAARNRERKTYK 988


>gi|116208202|ref|XP_001229910.1| hypothetical protein CHGG_03394 [Chaetomium globosum CBS 148.51]
 gi|88183991|gb|EAQ91459.1| hypothetical protein CHGG_03394 [Chaetomium globosum CBS 148.51]
          Length = 1453

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 142/469 (30%), Positives = 221/469 (47%), Gaps = 33/469 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++  +   G+ KPTPIQ KTIP+ L   DV G A TG+GKTA+FV+P+L 
Sbjct: 277 SFQGMSLSRPILRGLTSVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTAAFVVPILE 336

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R ++L PTRELA Q      K   + ++   L +GG+  + Q  +L  
Sbjct: 337 RLLYRPKKVPTTRVVVLTPTRELAIQCHSVATKLASHTDIKFCLAVGGLSLKVQEGELRL 396

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        +  +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 397 RPDVVIATPGRFIDHMRNSASFAVETVEILVLDEADRMLEDGFADELNEILTTLPKSRQT 456

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT  + K+    L  P RI V++   TA T+   FV       +K         
Sbjct: 457 MLFSATMTSTVDKLIRVGLNKPARIMVDSQKQTAVTLAQEFVRLRPGREEKRMGYLGPYL 516

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +      +        C           A       +         ++G +  ++
Sbjct: 517 QDPVHRTS----HYLLQAEEDCSPDPDHLRLAGAFEHRAPWKHEPGSAF--RDGKVNYLL 570

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA- 359
           A+DLA+RGLDI  +  V N++ P   E Y+HR+GRT RAGR G A TL A+ D K + A 
Sbjct: 571 ATDLASRGLDIKGIDTVINYEAPQSLEIYVHRVGRTARAGRSGVAITLAAEPDRKVVKAA 630

Query: 360 -----------IEKLIEK--------KVDWLNGDLSS-LNPPLEKIDIAQ--HNHARKNN 397
                      I ++I+         ++D ++ ++   L    E+  +AQ      +  N
Sbjct: 631 VRAGKAQGAKIISRVIDAADADKWQDQIDEMDDEIDEILQEEKEEKQLAQIEMQVKKGEN 690

Query: 398 PIPQKSTGFDRRKKN-YSSQKSHIPLKE--SEKISKLQQDIQENDADSL 443
            I  +     R K+  + +Q+     KE    +++ ++  +++  A  L
Sbjct: 691 LIKHEEEIHARPKRTWFETQEDKKKAKELGRAELNGVRDAMKKKGAGRL 739


>gi|170595924|ref|XP_001902572.1| DEAD/DEAH box helicase family protein [Brugia malayi]
 gi|158589680|gb|EDP28579.1| DEAD/DEAH box helicase family protein [Brugia malayi]
          Length = 658

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 124/436 (28%), Positives = 198/436 (45%), Gaps = 6/436 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--ML 60
           FA  G    ++  +  + Y  PTPIQ ++IP  L   DV GIA+TG+GKT +++ P  + 
Sbjct: 138 FAHFGFDEALMNVIRKSEYEHPTPIQAQSIPAALSGRDVLGIAKTGSGKTVAYLWPAIIH 197

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + +        P +L++ PTRELA QV    ++Y K YN+ V    GG     Q   L 
Sbjct: 198 IMDQPDLKEGDGPISLVIVPTRELALQVYQEAKRYCKVYNINVVCAYGGGNKWEQQNALT 257

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA+++I TPGRI+D           +  LV DEADRM DMGF   +Q+I+  +   RQ 
Sbjct: 258 EGAELVIATPGRIIDLVKINATNFTRVTFLVFDEADRMFDMGFEAQVQSISDHIRPDRQC 317

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT   +++K++   L +P RI           +           +K   LL  L++
Sbjct: 318 LMFSATFKSKVEKLAREALTDPVRIVQGEVGEANSDVIQTVEVLENADAKWQWLLNHLVK 377

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  I    +            K    +         ++              ++V
Sbjct: 378 FSSMGKVLIFVTKKIHAEDVANRLRTKDFKPILLH--GDMLQAERNEKLQAFRKDANILV 435

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP++  V NFD+    + ++HRIGRTGRAG+ G A+TLV + D +    +
Sbjct: 436 ATDVAARGLDIPEIKTVINFDLARDIDTHVHRIGRTGRAGQRGWAYTLVQESDKEMAGHL 495

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
            + +E     +   L  L         ++   A +  P  +   G+  + KN  +     
Sbjct: 496 VRNLESVNQIVPEPLLQLAMKSSWFRNSRERGASR--PQQRLGLGYKPKAKNPRTDTGTT 553

Query: 421 PLKESEKISKLQQDIQ 436
            +  +    + Q+  +
Sbjct: 554 SIARALNFEEGQKKAK 569


>gi|328789292|ref|XP_001120427.2| PREDICTED: probable ATP-dependent RNA helicase DDX52-like, partial
           [Apis mellifera]
          Length = 512

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 98/377 (25%), Positives = 165/377 (43%), Gaps = 15/377 (3%)

Query: 1   MDFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFV 56
           ++F +L    G+  K++  V++ GY  PTPIQ++ IP++LQ   +   A TG+GKTA+F+
Sbjct: 73  LEFIELSKDYGIPKKLINNVINCGYQYPTPIQMQAIPVMLQGRQILACAPTGSGKTAAFL 132

Query: 57  LPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL-------IGG 109
           LP+  I   G    +  R +IL PTRELA Q      +  + YN  + ++          
Sbjct: 133 LPI--IHHLGGPEKKGFRAIILSPTRELAKQTYRECLRLSEGYNFKIHIISKINQALNKY 190

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
            P  +Q   +       I               +   I   V    +  +      + + 
Sbjct: 191 GPKSSQKFDILITTPKRIIYLLNQDPPAISFNNVEWLIVDEVDKLFEDGIRCFRDQFEKI 250

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
             S         +FSAT T  + K           I V      A T        +    
Sbjct: 251 SKSCTSEKLHKAMFSATNTPIVTKWCR--RNLKGLITVTVGHRNAATDLVEQELLFVGAE 308

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           +   +  + +  +  +   ++F   K+    L + L   G +V  IH +  Q  R  ++ 
Sbjct: 309 RGKLVALRNIIQKGILPPVLVFVQSKERAQELFNELIYDGINVDVIHADRTQTQRDNVVR 368

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+EG I +++ ++L ARG+D   +  V N+D P+ A +YIHRIGRTGRAG  GKA T  
Sbjct: 369 CFREGKIWVLICTELMARGIDFKGINLVINYDFPSSAISYIHRIGRTGRAGHKGKAITFF 428

Query: 350 AKEDIKHIDAIEKLIEK 366
            ++D  ++ +I  ++ +
Sbjct: 429 TEQDTTNLRSIATIMRE 445


>gi|206562042|ref|YP_002232805.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia J2315]
 gi|198038082|emb|CAR54030.1| ATP-independent RNA helicase [Burkholderia cenocepacia J2315]
          Length = 465

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 155/422 (36%), Positives = 227/422 (53%), Gaps = 24/422 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GYV  TPIQ  ++P+ L   D+   A+TG+GKTA+F L +L  
Sbjct: 9   FSALPLTPATLANLAQLGYVDMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLAR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + +IL PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 69  LDA---RRFDVQAMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  + P TRQTL
Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL+NPK I++      ++         Y     +       L +
Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEIKLAERHDDSKI----RQRFYEVTEDERLHAVGQLLN 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 242 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGAIE 361

Query: 362 KLIEKKVDW------LNGDLSSLNPPLEKIDIAQHNHARKNNPIP-------QKSTGFDR 408
           +  +++V+W         D S L PP+E + I      RK+   P           GFD 
Sbjct: 362 QAQKREVEWHPLAELKPADDSVLLPPMETLQIL---GGRKDKIRPGDVLGALTGDAGFDG 418

Query: 409 RK 410
           ++
Sbjct: 419 KQ 420


>gi|313221076|emb|CBY31906.1| unnamed protein product [Oikopleura dioica]
          Length = 604

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 120/369 (32%), Positives = 200/369 (54%), Gaps = 5/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G   +++  +   G++ PTPIQ   IP +L   DV GIAQTG+GKTA FV P++ 
Sbjct: 230 SFGHMGFPDRLLERIRKVGFLDPTPIQSTAIPQILAGRDVIGIAQTGSGKTAGFVWPIIY 289

Query: 62  ILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
            + K R       P  LI+ PTREL  Q+     K+ KNY+ + V +  GG+    Q K+
Sbjct: 290 HVTKQRPLKYGDGPMALIMAPTRELCQQLYAEVRKFAKNYDSIRVGICFGGVNMYEQGKE 349

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G ++L+ TPGR++DH  +G   ++   I+ +DEADRML++GF P +++I + V   +
Sbjct: 350 LKMGVEILVATPGRLIDHVKKGNTELSKCTIICLDEADRMLELGFEPQVRSICNHVRPDK 409

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L FSAT    +++++   L +P ++         E              +K   L   
Sbjct: 410 QCLFFSATFKKVIERLATEVLNDPVKLTQGQIGQVNEN--VTQNFKILGQDQKLQWLLGN 467

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   +++ + ++F  +K + V +   L+K GF    IHG++ Q  R  ++  FK   +  
Sbjct: 468 IVQLNSVGSLLVFVTRKADCVTVHEELKKSGFKTGVIHGDMHQAERNDVIKAFKRQQLAT 527

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLDI  +  V N+D     + ++HR+GRT RAG  G A +L+  +D ++  
Sbjct: 528 LIATDVAARGLDISHIKTVINYDPARNYDTHVHRVGRTARAGNTGTAISLLTPQDSEYAG 587

Query: 359 AIEKLIEKK 367
            + + IE  
Sbjct: 588 IVLRSIETT 596


>gi|300717997|ref|YP_003742800.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
 gi|299063833|emb|CAX60953.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
          Length = 443

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 145/436 (33%), Positives = 223/436 (51%), Gaps = 22/436 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ A+ + GY +PT IQ   IP  L+  DV G A TGTGKTA+++LP + 
Sbjct: 5   TFSELELDESLLKALQEKGYTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPVLQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K  +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRVLILTPTRELAMQVADQARELAKYTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ T GR+L +          +E L++DEADRMLDMGF   I+ I +   + +QT
Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVESLILDEADRMLDMGFAQDIETIAAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  +  K     L N     +    +  E  +       A   K    L   + 
Sbjct: 185 LLFSATLEGDAIKDFSERLLNEPEE-IEADPARRERKKILQWYYRADDVKHKTALLIHML 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   ++F  +++ V  LC  L + G +   + G ++Q  R + +    +G + ++V
Sbjct: 244 KQPEVTRSVVFVRKRERVHELCGWLREAGINTSYLEGELEQFKRNEAIKRVVDGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HVFNFD+P  ++ Y+HRIGRTGRAG+ G A +LV   D   +  +
Sbjct: 304 ATDVAARGIDIEDVSHVFNFDMPRTSDTYLHRIGRTGRAGKKGIAISLVEAHDNVLLGKV 363

Query: 361 EKLIE-----KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            + I+     + +D L     +  PP EK+           N  P K     R++   + 
Sbjct: 364 TRYIKEPLKSRTIDELR---PTTRPPSEKL-----------NGKPSKKVLAKRKELKQTE 409

Query: 416 QKSHIP-LKESEKISK 430
            K   P  KE  + +K
Sbjct: 410 AKEAQPRAKERHRDTK 425


>gi|7022398|dbj|BAA91585.1| unnamed protein product [Homo sapiens]
          Length = 622

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 127/389 (32%), Positives = 193/389 (49%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 182 SFKEMKFPATILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+D GF   I+ I
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDTGFEGDIRTI 361

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 362 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKE 417

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 538 KACDESVLMDLKALLLEAKQKVPPVLQVL 566


>gi|171696192|ref|XP_001913020.1| hypothetical protein [Podospora anserina S mat+]
 gi|170948338|emb|CAP60502.1| unnamed protein product [Podospora anserina S mat+]
          Length = 715

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 125/429 (29%), Positives = 202/429 (47%), Gaps = 35/429 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  L  +++  V D GY +P+PIQ  +IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 282 SWEESNLPRRLLDIVHDVGYDEPSPIQRASIPIALQARDLIGVAVTGSGKTAAFLLPLLV 341

Query: 62  ILE-----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +          +   P  LIL PTREL  Q+ +   K+      TV  ++GG   E Q 
Sbjct: 342 YISELPPLNDVNKNDGPYALILAPTRELVQQIENEARKFATPLGFTVVSIVGGHSLEEQA 401

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GA++++ TPGR++D   R  L+      +++DEADRM+D GF   +  I   +P 
Sbjct: 402 YALRNGAEIIVATPGRLVDCLERRLLVFTQCCYIIMDEADRMIDQGFEEPLTKILDALPV 461

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ--------- 227
           T +          +L K         ++  + T +                         
Sbjct: 462 TNEKPDTEEAENPQLMKKYLGGKDRYRQTMMYTATMPPLVERIAKKYLRRPAIVTIGNAG 521

Query: 228 ---------------YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
                            K+   L+++L S       I+F N K+N   +   ++  GFS 
Sbjct: 522 EAVDTVEQRVEFIAGEDKRKNRLREILNSGQFKPPIIVFVNIKRNCEMVAKDIKSWGFST 581

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
             +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++P+  E+Y HR
Sbjct: 582 TTLHGSKTQEQREASLASVRNGQSSILVATDLAGRGIDVPDVSLVVNFNMPSSIESYTHR 641

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T +  ED + +  ++++I K        +S +   L + + AQ   
Sbjct: 642 IGRTGRAGKSGVAITFLGNEDTEVMYDLKQIISK------SSISKVPDELRRHEAAQSKP 695

Query: 393 ARKNNPIPQ 401
            R    +  
Sbjct: 696 QRGQKKVED 704


>gi|169409547|gb|ACA57893.1| DEAD box polypeptide 43 (predicted) [Callicebus moloch]
          Length = 680

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 132/360 (36%), Positives = 204/360 (56%), Gaps = 5/360 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI---LEKG 66
           P+V+  +  +G+ KPTPIQ +  P+VLQ  D+ G+AQTGTGKT  +++P           
Sbjct: 249 PEVMENIKKSGFKKPTPIQAQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLDLQPTV 308

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           + +   P  L+L PTRELA QV     KY     L    + GG   + Q ++L +G D++
Sbjct: 309 KGQRNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIEELRKGVDII 367

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + NI  LV+DEAD+MLDMGF P I  I   V   RQT++ SAT
Sbjct: 368 IATPGRLNDLQMNNFVNLRNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTIMTSAT 427

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
               + ++++++L+ P  + V T    A +     +    +  K    +Q  LQS  +  
Sbjct: 428 WPRSVHRLAQSYLKEPMLVYVGTLDLVAVSSVEQNIIVTTEEEKWI-HIQTFLQSMSSTD 486

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+F ++K    +L   L     S+ ++HG+ +QR R K L NFK G +++++A+DLA+
Sbjct: 487 KVIVFVSRKAVADHLSSELILGNMSIESLHGDREQRDREKALENFKTGKVRILIATDLAS 546

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLD+ D+ HV+NFD P   E Y+HRIGRTGRAGR G + T + + D +    +  ++++
Sbjct: 547 RGLDVHDITHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTMTRNDWRFAPELVNILQR 606


>gi|282916828|ref|ZP_06324586.1| helicase [Staphylococcus aureus subsp. aureus D139]
 gi|283770634|ref|ZP_06343526.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus H19]
 gi|282319315|gb|EFB49667.1| helicase [Staphylococcus aureus subsp. aureus D139]
 gi|283460781|gb|EFC07871.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus H19]
          Length = 448

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 132/450 (29%), Positives = 219/450 (48%), Gaps = 15/450 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ + IP +L+R ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNKKLER 121
            +     ++ P+ +++ PTRELA Q+ D      +        + IGG   E   ++   
Sbjct: 66  FDS---EIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRCNA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L ++    LVIDEAD M+D+G I  +  I + +       
Sbjct: 123 QPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNANIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +LQ     +L +P+ + V++     + IE   + T      +  L       
Sbjct: 183 VFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPTKGAAKVEKTLNL---ID 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+FCN + N  +L  SL + G  V  IHG +  R R + +   +    Q ++A
Sbjct: 240 ILNPYLCIVFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYVIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  IE
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 362 K--LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-----KKNYS 414
               +   VD  +G+L  +    ++    + +    N    +  +    +     KK + 
Sbjct: 360 DRGFVFNTVDIKDGELKEVKAHNQRQARMRKDDHLTNQVKNKVRSKIKNKVKPGYKKKFK 419

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLG 444
            +   +  +E ++ SK QQ+ Q+   +  G
Sbjct: 420 QEVEKMKRQERKQFSK-QQNRQKRKQNKKG 448


>gi|168067875|ref|XP_001785829.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662518|gb|EDQ49361.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 538

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 128/372 (34%), Positives = 200/372 (53%), Gaps = 9/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  V    Y  PTPIQ + +P+ L   D+ G A+TG+GKTA+F LPM+ 
Sbjct: 111 SFEDMCLHLSIMKDVTFHNYTTPTPIQAQALPVALSGRDLLGCAETGSGKTAAFSLPMIQ 170

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
               +    R   P  L+L PTRELA Q+    + + ++      ++++GG     Q  +
Sbjct: 171 HCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSAEGFKTSIVVGGTNIYEQRSE 230

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G ++++ TPGR +DH  +G   ++ +  +V+DEADRMLDMGF P I+ +   +P   
Sbjct: 231 LRAGVEIVVATPGRFIDHLQQGNSSLSRVSYVVLDEADRMLDMGFEPQIREVMRSLPKKH 290

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK------C 232
           QTLLFSATM +E++ +++ +L  P R++V   SS    +         +           
Sbjct: 291 QTLLFSATMPEEIEALAQEYLNKPVRVKVGRVSSPTANVTQNLEKITEKEKIDSLLALLV 350

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
               Q L S       I+F  +K     +  +L +QG    A+HG   Q  R   L +F+
Sbjct: 351 DEHSQSLDSNQPPPLTIVFVERKARCDEVTDALVEQGLKATALHGGRSQSEREAALRDFR 410

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +GT  ++VA+D+A+RGLD+  V HV N D+P   E+Y+HRIGRTGRAG  G+A +   + 
Sbjct: 411 KGTTNILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGASGRATSFYTER 470

Query: 353 DIKHIDAIEKLI 364
           D+  +  I + I
Sbjct: 471 DVFLVAQIRRAI 482


>gi|163750030|ref|ZP_02157274.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161330304|gb|EDQ01285.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 436

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 162/430 (37%), Positives = 240/430 (55%), Gaps = 27/430 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P+++  +   GY +PTPIQ + IP +L   D+   AQTG+GKTA+F LP+L  
Sbjct: 13  FSSLSLRPELLQVLTALGYSQPTPIQTQAIPAILAGQDIMAGAQTGSGKTAAFSLPILHK 72

Query: 63  LEKGRARVRMPRTL-------------------ILEPTRELAAQVADNFEKYGKNYNLTV 103
           L +   R+                         +L PTRELA QV  +F KY K   L  
Sbjct: 73  LTEPLLRLDEKNQQESEAPSCSQVPAIRAIRALVLTPTRELALQVHGSFVKYAKLTQLKS 132

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163
           AL+ GG+  +AQ + L  G D+L+ TPGR+LDH  RG + ++ +E LV DEADRMLDMGF
Sbjct: 133 ALVYGGVSIDAQAQILAAGVDILVATPGRLLDHLRRGSMSLSELEFLVFDEADRMLDMGF 192

Query: 164 IPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
              I  I   +P TRQTLLFSAT  + L  +S++ L++PKRIEV   +            
Sbjct: 193 KDEIDAIVKQLPKTRQTLLFSATFDESLYGLSQSLLRDPKRIEVGERN---AAAVEIEQR 249

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            YA  S +   L   L     ++  +IF  +K     L  +L K G    A HG++ Q +
Sbjct: 250 VYAVDSDRKLALITHLIESGKLQQVLIFSRKKVAADKLAANLTKAGIGAQAFHGDLSQGA 309

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R K+L +FK+G ++++VA+D+AARG+DI D+ +V N+++P +AE+Y+HRIGRTGRAG  G
Sbjct: 310 REKVLQSFKDGEVRVLVATDVAARGIDIIDLNYVVNYELPYKAEDYVHRIGRTGRAGNKG 369

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            A TL+ +ED   ++ +E +++K++   WL G    L    + +D  +      +    +
Sbjct: 370 VAITLLCREDEHLLEEVEVVLDKRLPQQWLAGFEPDLT---KSVDTPRKGGRNAHKQRAK 426

Query: 402 KSTGFDRRKK 411
           K     RR +
Sbjct: 427 KRANGGRRGR 436


>gi|116872882|ref|YP_849663.1| DEAD-box ATP dependent DNA helicase [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|315303187|ref|ZP_07873846.1| probable ATP-dependent RNA helicase YqfR [Listeria ivanovii FSL
           F6-596]
 gi|116741760|emb|CAK20884.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|313628444|gb|EFR96918.1| probable ATP-dependent RNA helicase YqfR [Listeria ivanovii FSL
           F6-596]
          Length = 435

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 136/429 (31%), Positives = 221/429 (51%), Gaps = 15/429 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G  P +  A+   G+ +PT +Q K IP +L+   + G +QTGTGKT +F+LP++  
Sbjct: 7   FDQFGFQPFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINN 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKLE 120
           +   +  V+     I  P+RELA Q+ +   K  K     +A+   IGG   +    KL+
Sbjct: 67  VNPEKDAVQAV---ITAPSRELATQIYNEIRKVTKFSEKEIAVQLVIGGTDKQRAIDKLK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++  + LVIDEAD  LDMGF+  + +I   +P   Q 
Sbjct: 124 KQPQIIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQM 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+  +L+     +++NP+   +    + ++T+EH      A  S+    L + + 
Sbjct: 184 LVFSATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEH---RIMATRSRDKLDLLKNVL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F N K     + + L ++G  V  IHG+++ R R + +   +    Q +V
Sbjct: 241 VGSQPYLAIVFTNTKTTADEVANGLTERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI  + HV N+++P+  + YIHR GRTGRAG  G A TL    D   ++ +
Sbjct: 301 ATDLAARGIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQL 360

Query: 361 EKL-IE-KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK-STGFDRRKKNYSSQK 417
           EK+ IE K VDW N +  +L    E  +      A++    P++       ++K   + K
Sbjct: 361 EKMGIEFKHVDWKNKEFVTL----EDRNRRAKREAKRETADPREIGMRKKAKQKGKPNYK 416

Query: 418 SHIPLKESE 426
             I  K +E
Sbjct: 417 KKINYKMNE 425


>gi|312884016|ref|ZP_07743733.1| ATP-dependent RNA helicase SrmB [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368474|gb|EFP96009.1| ATP-dependent RNA helicase SrmB [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 407

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 200/371 (53%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA+L L P ++ A+ + GY +PT IQ + IP  L   DV   A TGTGKTA+FVLP L 
Sbjct: 4   NFAELDLDPDLLLAIDEMGYQRPTQIQAEAIPQALDGRDVLASAPTGTGKTAAFVLPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L+    +   P  + IL PTRELA QVA+      K+  L +  + GG+ ++     L 
Sbjct: 64  FLQDFPRKQPGPARILILTPTRELAMQVAEQARALAKHTRLNIFTITGGVQYQEHADILA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR++++    +     IE L++DEADRMLDMGF P +  ++S   + +QT
Sbjct: 124 TTQDIVVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSSECRWRKQT 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT     ++  + + L+ P  I+        + I   +        K         
Sbjct: 184 LLFSATLEGRGVEGFTADLLKEPAMIDAEPSRRERKKIAQWYHRADDMAHKLE---LLKS 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  +  I+F   ++ +  L   LEK       I G + Q  R   +S F +GT+ ++
Sbjct: 241 ILNNQAERSIVFLKTRERLSALRSELEKAEIPCAWIQGEMPQDRRNNAISRFSDGTVNVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+D+P+V HV N+D+P  A+ Y+HRIGRT RAG+ G A +LV   D   I+ 
Sbjct: 301 LATDVAARGIDLPNVTHVINYDMPRSADVYLHRIGRTARAGKKGNAISLVEAHDQPMIER 360

Query: 360 IEKLIEKKVDW 370
           + + + +++  
Sbjct: 361 VARYVSEEIKE 371


>gi|156083314|ref|XP_001609141.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
           containing protein [Babesia bovis T2Bo]
 gi|154796391|gb|EDO05573.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
           containing protein [Babesia bovis]
          Length = 994

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 116/382 (30%), Positives = 193/382 (50%), Gaps = 7/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+  GL   ++  +    Y KP PIQ++ IP ++   DV  IA+TG+GKT +++LP + 
Sbjct: 389 NFSQCGLPDPILSLLQRRNYEKPFPIQMQCIPALMCGRDVLAIAETGSGKTMAYLLPAIR 448

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +           LI+ PTRELA+Q+     K  K   +    + GG P   Q   L
Sbjct: 449 HVLYQPKLRENEGMIVLIIAPTRELASQIGVESSKLCKLVGIRTKAVYGGSPIGEQLNAL 508

Query: 120 ERGADVLICTPGRIL---DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RG +++  TPGR++      N     +  +  +VIDEADRM D+GF P I  I   +  
Sbjct: 509 KRGVEIVCGTPGRLIEVLTISNGKVTNLRRVTFVVIDEADRMFDLGFSPQISAIVDNIRP 568

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT LFSAT    ++ +++  L  P +I V     +A  ++   +    +      L  
Sbjct: 569 DRQTALFSATFPPTIEALAKKILTKPLQIIVGESGKSASQVDQHVMVLPERQKMYALLKL 628

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +    + I+F N++ +  ++   L K G+    +HG  DQ  R   L +F++GT 
Sbjct: 629 LGEWHEH--GSIIVFVNRQLDADSMYAELIKHGYDCAVLHGGQDQTDREFTLQDFRDGTK 686

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+ +AARG+D+ +V  V N+  P+  E+Y+HR+GRTGRAG  G ++T +  E+   
Sbjct: 687 GILIATSIAARGIDVKNVVLVINYATPDHIEDYVHRVGRTGRAGNIGTSYTFITPEEGAK 746

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
              I K ++     +  +L  L
Sbjct: 747 SHDIIKAMKASNQVVPIELQEL 768


>gi|311747002|ref|ZP_07720787.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Algoriphagus sp.
           PR1]
 gi|126578701|gb|EAZ82865.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Algoriphagus sp.
           PR1]
          Length = 418

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 122/375 (32%), Positives = 202/375 (53%), Gaps = 10/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF+       +   +   G+ +PTPIQ K IP++L   D+   AQTGTGKTA+F+LP+L
Sbjct: 1   MDFSSFNFETSLQEGLDAMGFEQPTPIQEKAIPVILDNKDLIACAQTGTGKTAAFILPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + K  +      TL+L PTRELA Q+    + +     ++   + GG       ++ +
Sbjct: 61  NKISKSGSDKL--NTLVLAPTRELAIQIDQQIQGFSYFLGISSIPIYGGGDGIVWEQQKK 118

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
               GA++++ TPGR++     GK+ ++++E L++DEADRM+DMGF   I  I + +P  
Sbjct: 119 ALETGAEIVVATPGRLIALLAGGKMDLSSLEHLILDEADRMMDMGFSDDILKIVNYLPKE 178

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSATM  ++++ S   L+NP+ I +    + A   +  +     Q       +  
Sbjct: 179 RQTILFSATMPSKIRQFSMKILKNPQEISIAIGKTAAGVTQAMYSVYDGQKEDLVKNIL- 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +I     K  V   +   ++ F V A H +++Q  R KI+S FK  +I+
Sbjct: 238 ----SQKAYEAVIIFASTKEKVKGLYKKLRKDFEVEAFHSDLEQIEREKIMSGFKNKSIK 293

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ +D+ +RG+D+  +  V NFD P+  E+Y+HR+GRT RA + G+A T V  +D    
Sbjct: 294 ILIGTDIISRGIDVVGIELVINFDTPSDPEDYVHRVGRTARADKEGEAITFVNPKDQYKF 353

Query: 358 DAIEKLIEKKVDWLN 372
             IEKLI  ++  + 
Sbjct: 354 ARIEKLIGMEITQIP 368


>gi|227544205|ref|ZP_03974254.1| ATP-dependent RNA helicase [Lactobacillus reuteri CF48-3A]
 gi|300908200|ref|ZP_07125666.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           reuteri SD2112]
 gi|227185841|gb|EEI65912.1| ATP-dependent RNA helicase [Lactobacillus reuteri CF48-3A]
 gi|300894627|gb|EFK87983.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           reuteri SD2112]
          Length = 467

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 121/451 (26%), Positives = 208/451 (46%), Gaps = 20/451 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  L P ++ A+    + +PTP+Q + IP+++    V G + TG+GKT +F+LP+ +
Sbjct: 15  KFADFQLQPYLLTAIQKINFRQPTPVQQQVIPVIMAGRSVVGQSATGSGKTHAFLLPIFS 74

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +      V+   T             A    KY  +       + G       ++   +
Sbjct: 75  KINPEDQTVQAVITTPSRELAYQIYNAAKQLNKYAPHPLTIHNYVGGTDKQHQVDQLSRK 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LD      L ++  ++ V+DEAD  LDMGF+  +  I S  P   Q +
Sbjct: 135 QPQLVIGTPGRVLDLIKSQALDIHTAKMFVVDEADMTLDMGFLHEVDQIASHFPDDLQMM 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +L+   + +++NP   E+ T +     +++  ++T  Q   +         +
Sbjct: 195 VFSATIPQKLRPFLKKYMENPVIEEIPTEAVINPDVDNWLMSTKGQDRNQLIYRLL---T 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F N K+  V L   LE QG  V  IHG ++ R R + +   ++   Q +VA
Sbjct: 252 LGEPYLALVFANTKERAVELTQYLENQGLKVAMIHGGLEARRRKRTMRQIRDLEYQYVVA 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+DI  V  V N D+P   E ++HR+GRTGR G  G A TL    +    D I 
Sbjct: 312 TDLAARGIDIDGVSLVINDDLPTDLEYFVHRVGRTGRNGMKGTAITLYEPAED---DLIA 368

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR------------- 408
           KL E+ V ++  +L +           + ++ R+ N +     G+ +             
Sbjct: 369 KLEERGVKFVPKELKNGQLVTTHDRNRRKHYKRRQNELDPSMKGYVKKTKKKVKPGYKKR 428

Query: 409 -RKKNYSSQKSHIPLKESEKISKLQQDIQEN 438
            +K     ++    L+   KI K ++  Q+ 
Sbjct: 429 IKKAIKEDEQQKRKLELRHKIRKAKRARQKQ 459


>gi|57651951|ref|YP_186455.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161365|ref|YP_494213.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195366|ref|YP_500170.1| hypothetical protein SAOUHSC_01659 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221673|ref|YP_001332495.1| ATP-dependent RNA helicase DEAD/DEAH box family protein
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161509787|ref|YP_001575446.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140022|ref|ZP_03564515.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253732211|ref|ZP_04866376.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|258450613|ref|ZP_05698675.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A5948]
 gi|262051220|ref|ZP_06023444.1| hypothetical protein SA930_1651 [Staphylococcus aureus 930918-3]
 gi|282920107|ref|ZP_06327832.1| ATP-dependent RNA helicase [Staphylococcus aureus A9765]
 gi|284024617|ref|ZP_06379015.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848589|ref|ZP_06789335.1| ATP-dependent RNA helicase [Staphylococcus aureus A9754]
 gi|304380853|ref|ZP_07363513.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|57286137|gb|AAW38231.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus COL]
 gi|87127339|gb|ABD21853.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202924|gb|ABD30734.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150374473|dbj|BAF67733.1| ATP-dependent RNA helicase DEAD/DEAH box family protein
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368596|gb|ABX29567.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724000|gb|EES92729.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|257861771|gb|EEV84570.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A5948]
 gi|259160857|gb|EEW45877.1| hypothetical protein SA930_1651 [Staphylococcus aureus 930918-3]
 gi|269941048|emb|CBI49432.1| putative helicase [Staphylococcus aureus subsp. aureus TW20]
 gi|282594455|gb|EFB99440.1| ATP-dependent RNA helicase [Staphylococcus aureus A9765]
 gi|294824615|gb|EFG41038.1| ATP-dependent RNA helicase [Staphylococcus aureus A9754]
 gi|302751389|gb|ADL65566.1| ATP-dependent RNA helicase DEAD/DEAH box family protein
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340580|gb|EFM06514.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|315198747|gb|EFU29075.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140557|gb|EFW32411.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144094|gb|EFW35863.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314234|gb|AEB88647.1| ATP-dependent RNA helicase DEAD/DEAH box family protein
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329728429|gb|EGG64866.1| DEAD-box ATP-dependent RNA helicase CshB [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329733171|gb|EGG69508.1| DEAD-box ATP-dependent RNA helicase CshB [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 448

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 133/450 (29%), Positives = 220/450 (48%), Gaps = 15/450 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ + IP +L+R ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNKKLER 121
           ++     ++ P+ +++ PTRELA Q+ D      +        + IGG   E   ++   
Sbjct: 66  IDS---EIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRCNA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L ++    LVIDEAD M+D+G I  +  I + +       
Sbjct: 123 QPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNANIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +LQ     +L +P+ + V++     + IE   + T      +  L       
Sbjct: 183 VFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFYLIPTKGAAKVEKTLNL---ID 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFCN + N  +L  SL + G  V  IHG +  R R + +   +    Q ++A
Sbjct: 240 ILNPYLCIIFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYVIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  IE
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 362 K--LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-----KKNYS 414
               +   VD  +G+L  +    ++    + +    N    +  +    +     KK + 
Sbjct: 360 DRGFVFNTVDIKDGELKEVKAHNQRQARMRKDDHLTNQVKNKVRSKIKNKVKPGYKKKFK 419

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLG 444
            +   +  +E ++ SK QQ+ Q+   +  G
Sbjct: 420 QEVEKMKRQERKQFSK-QQNRQKRKQNKKG 448


>gi|194757571|ref|XP_001961038.1| GF13667 [Drosophila ananassae]
 gi|190622336|gb|EDV37860.1| GF13667 [Drosophila ananassae]
          Length = 782

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 148/462 (32%), Positives = 239/462 (51%), Gaps = 18/462 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP + 
Sbjct: 158 SFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLE 217

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L +      + R L+L PTREL AQV    ++  +  ++ V L IGG+  +AQ   L 
Sbjct: 218 RLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLR 277

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  D++I TPGR++DH         ++IE+L++DEADRMLD  F   ++ I +    TRQ
Sbjct: 278 QNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQ 337

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM+++++ ++   L  P ++ VN     A  +   F+            +   L
Sbjct: 338 TMLFSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASL 397

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + ++F   KK    L   L   G     +HGN+ Q+ R++ L  FKE  I ++
Sbjct: 398 ICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVL 457

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  
Sbjct: 458 IATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKD 517

Query: 360 IEKLIEKK----------VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           I K  E            ++     L+SL P ++ I + +    R+     Q+ +  +R+
Sbjct: 518 IIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNI-LEEEQAERQLAKTEQQLSKTERK 576

Query: 410 KKNYSSQKS-HIPLKESEKISKLQQDI----QENDADSLGFR 446
               S+++      K+  +  K +  +    +E  A   G  
Sbjct: 577 LLGQSNERRGWFQTKKQREDEKARLALTPADEEKPAGPKGKG 618


>gi|332194953|gb|AEE33074.1| translation initiation factor 4A-2 [Arabidopsis thaliana]
          Length = 407

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 193/377 (51%), Gaps = 10/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++      G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F      
Sbjct: 40  SFDAMGLQENLLR-----GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC---SG 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L++    +   + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 92  VLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQA 151

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 152 GVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 211

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 212 VFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDL--YE 269

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 270 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 329

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V  +D + +  I+
Sbjct: 330 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQ 389

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     V+ L  +++ L
Sbjct: 390 KFYNVVVEELPSNVADL 406


>gi|289616563|emb|CBI56728.1| unnamed protein product [Sordaria macrospora]
          Length = 434

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 151/375 (40%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q   IP  +   D+   A++G GKTA FVL  L  
Sbjct: 52  FRDFLLKPELLRAIADCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQ 111

Query: 63  LEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +E   G   V +         +        +         +           E    K  
Sbjct: 112 VEPVAGECSVLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEILKNKET 171

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++           ++   L +    ++ +    +  +     +Q I    P  +Q 
Sbjct: 172 HPHIIVGTPGRLNALVRDKHLRLGSVRMFVLDECDKMLDQIDMRRDVQEIFRATPQQKQV 231

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++DE++ +   F+QNP    V+  +         +     +  K   L +    
Sbjct: 232 MMFSATLSDEIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIPLEEREKNRKLNEL--L 289

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      IIF         L   L +  F   A+H  + Q  R++    FKE   ++ V
Sbjct: 290 DELQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICV 349

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+  RG+DI  +    N+D+P  A++Y+HR+GR GR G  G A + V  + D + + A
Sbjct: 350 ATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVTTDQDKEVLKA 409

Query: 360 IEKLIEKKVDWLNGD 374
           IEK  E  +     +
Sbjct: 410 IEKRFEVALPEFPKE 424


>gi|323448800|gb|EGB04694.1| hypothetical protein AURANDRAFT_70381 [Aureococcus anophagefferens]
          Length = 544

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 117/384 (30%), Positives = 191/384 (49%), Gaps = 8/384 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
            F +  +   V+  V+  G+ +P+PIQ +  P+ L   D+ GI++TG+GKT +F+LP  +
Sbjct: 150 TFEEASMPDYVLTEVMKQGFKEPSPIQAQGWPMALLGRDMIGISRTGSGKTLAFLLPGMI 209

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P  L+L PTRELA Q+    +K+G +  +    + GG P   Q   L
Sbjct: 210 HINAQPYLQPGDGPIVLVLAPTRELAVQIKVECDKFGASSQIKNTCVYGGAPKRTQTGDL 269

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D    G   +  +  LV+DEADRMLDMGF P ++ I S +   RQ
Sbjct: 270 QRGVEIVIATPGRLIDFLESGVTNLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQ 329

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E++ ++ +FL++  ++ V +   +A      +V      +K   +     
Sbjct: 330 TLMWSATWPKEVRNMANDFLKDFYQVTVGSLELSANKDITQYVECVDDGAKYRRMTD--F 387

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ-- 297
             +  +   I+F   K+    L  SL  +GF    IHG+  Q  R  +L+ F+ G     
Sbjct: 388 LKEHGVDKMIVFVETKRGCDQLSRSLAHEGFPARCIHGDKAQDERDWVLNEFRSGKCPLL 447

Query: 298 --LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
                A    AR         V NFD P+  E+Y+HRIGR GRAG+ G A +   ++  K
Sbjct: 448 VATDRAPRARARLTARLRRRMVVNFDFPSNLEDYVHRIGRCGRAGQKGTALSFFTQKSSK 507

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLN 379
               + K++      +  +L  + 
Sbjct: 508 WASGLCKILGDAGQKIPPELQQMQ 531


>gi|117919611|ref|YP_868803.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117611943|gb|ABK47397.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 409

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 170/413 (41%), Positives = 240/413 (58%), Gaps = 16/413 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L  ++V  + + GY +PTPIQI+ IP +L + DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFSALSLHSQLVNTLAELGYQQPTPIQIEAIPAILAKQDVMAGAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L         P+ +   +L PTRELA QV  +F KY K  ++ V +  GG+  EAQ  
Sbjct: 61  QQLLIDNESQDAPKDVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           + + G DVLI TPGR+LDH  +G L +  + +LV DEADRMLDMGF+  I+ +   VP  
Sbjct: 121 EFKAGIDVLIATPGRLLDHLRQGALNLKRLSVLVFDEADRMLDMGFMDEIKAVLKQVPAQ 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT+ D +   S+N L++PK IEV   ++TA  +       YA  S +      
Sbjct: 181 RQTLLFSATLDDSIFGFSKNLLRDPKLIEVAKRNTTAAQV---EQRVYAIDSDRKTEFVS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L      +  +IF   K+ V  L   L + G +  A HG++ Q +R K+L +FK+G +Q
Sbjct: 238 HLVRSKNWQQVLIFSRTKQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLVQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI D+ +V NF++P  AE+YIHRIGRTGRAG  G A TL ++ED   +
Sbjct: 298 VLVATDVAARGLDIADLQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLL 357

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           + +E L++K++   W  G     N              R+N+   QK     R
Sbjct: 358 EEVEALLDKRLPQQWYPGFEPDFNK--------MEPEPRRNSKAAQKQRAKKR 402


>gi|301789323|ref|XP_002930057.1| PREDICTED: spliceosome RNA helicase BAT1-like [Ailuropoda
           melanoleuca]
          Length = 428

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 164/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 47  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY  N  + V      I  + +  K    
Sbjct: 107 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L +    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 167 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  I V+  +         +        K   L        
Sbjct: 227 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL--LDV 284

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 285 LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 344

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V   FN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 345 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 404

Query: 362 KLIEKKVDWLNGDLS 376
              E  +  L  ++ 
Sbjct: 405 DRFEVNISELPDEID 419


>gi|281342596|gb|EFB18180.1| hypothetical protein PANDA_020423 [Ailuropoda melanoleuca]
          Length = 425

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 164/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 47  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY  N  + V      I  + +  K    
Sbjct: 107 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L +    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 167 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  I V+  +         +        K   L        
Sbjct: 227 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL--LDV 284

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 285 LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 344

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V   FN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 345 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 404

Query: 362 KLIEKKVDWLNGDLS 376
              E  +  L  ++ 
Sbjct: 405 DRFEVNISELPDEID 419


>gi|260545280|ref|ZP_05821021.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260754789|ref|ZP_05867137.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260758012|ref|ZP_05870360.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260761835|ref|ZP_05874178.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260883806|ref|ZP_05895420.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|261214040|ref|ZP_05928321.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|260096687|gb|EEW80562.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260668330|gb|EEX55270.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260672267|gb|EEX59088.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260674897|gb|EEX61718.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260873334|gb|EEX80403.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|260915647|gb|EEX82508.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
          Length = 458

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 154/448 (34%), Positives = 240/448 (53%), Gaps = 11/448 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 16  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 76  IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 135

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 136 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 195

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 196 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEI---TQVVHPVPTKEKRRLLSAML 252

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 253 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 312

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 313 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 372

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK---KNYSSQ 416
           +E++   K+   +  +     P+ K    Q    R      +K+     R+   K     
Sbjct: 373 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--GQRTEQAESRKAPAHKHRRPAQKAGEQH 430

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           ++       E   K ++  + N      
Sbjct: 431 RAGAHASAGEAAPKPKRPFRSNGGQRAA 458


>gi|237815476|ref|ZP_04594474.1| DEAD-box ATP dependent DNA helicase [Brucella abortus str. 2308 A]
 gi|237790313|gb|EEP64523.1| DEAD-box ATP dependent DNA helicase [Brucella abortus str. 2308 A]
          Length = 545

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 154/448 (34%), Positives = 240/448 (53%), Gaps = 11/448 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 103 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 162

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 163 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 222

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 223 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 282

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 283 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEI---TQVVHPVPTKEKRRLLSAML 339

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 340 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 399

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 400 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 459

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK---KNYSSQ 416
           +E++   K+   +  +     P+ K    Q    R      +K+     R+   K     
Sbjct: 460 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--GQRTEQAESRKAPAHKHRRPAQKAGEQH 517

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           ++       E   K ++  + N      
Sbjct: 518 RAGAHASAGEAAPKPKRPFRSNGGQRAA 545


>gi|156602043|gb|ABU86917.1| Bat1 [Ornithorhynchus anatinus]
          Length = 451

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 164/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 47  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY  N  + V      I  + +  K    
Sbjct: 107 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L +    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 167 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  I V+  +         +        K   L        
Sbjct: 227 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL--LDV 284

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 285 LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 344

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V   FN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 345 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 404

Query: 362 KLIEKKVDWLNGDLS 376
              E  +  L  ++ 
Sbjct: 405 DRFEVNISELPDEID 419


>gi|30585031|gb|AAP36788.1| Homo sapiens HLA-B associated transcript 1 [synthetic construct]
 gi|60654019|gb|AAX29702.1| HLA-B associated transcript 1 [synthetic construct]
 gi|60654021|gb|AAX29703.1| HLA-B associated transcript 1 [synthetic construct]
          Length = 429

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 164/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 47  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY  N  + V      I  + +  K    
Sbjct: 107 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L +    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 167 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  I V+  +         +        K   L        
Sbjct: 227 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL--LDV 284

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 285 LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 344

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V   FN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 345 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 404

Query: 362 KLIEKKVDWLNGDLS 376
              E  +  L  ++ 
Sbjct: 405 DRFEVNISELPDEID 419


>gi|62177121|ref|NP_001014399.1| spliceosome RNA helicase DDX39B [Canis lupus familiaris]
 gi|61217540|sp|Q5WR10|DX39B_CANFA RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
           U2AF65-associated protein; AltName: Full=DEAD box
           protein UAP56
 gi|39540669|gb|AAR27886.1| BAT1 [Canis lupus familiaris]
          Length = 428

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 164/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 47  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY  N  + V      I  + +  K    
Sbjct: 107 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L +    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 167 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  I V+  +         +        K   L        
Sbjct: 227 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL--LDV 284

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 285 LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 344

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V   FN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 345 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 404

Query: 362 KLIEKKVDWLNGDLS 376
              E  +  L  ++ 
Sbjct: 405 DRFEVNISELPDEID 419


>gi|62289973|ref|YP_221766.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 1 str.
           9-941]
 gi|82699901|ref|YP_414475.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308]
 gi|189024215|ref|YP_001934983.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|254689280|ref|ZP_05152534.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 6 str. 870]
 gi|254693764|ref|ZP_05155592.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 3 str. Tulya]
 gi|254697417|ref|ZP_05159245.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254730315|ref|ZP_05188893.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 4 str. 292]
 gi|256257530|ref|ZP_05463066.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 9 str. C68]
 gi|297248372|ref|ZP_06932090.1| ATP-dependent helicase [Brucella abortus bv. 5 str. B3196]
 gi|62196105|gb|AAX74405.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82616002|emb|CAJ11028.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Brucella melitensis biovar Abortus 2308]
 gi|189019787|gb|ACD72509.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|297175541|gb|EFH34888.1| ATP-dependent helicase [Brucella abortus bv. 5 str. B3196]
          Length = 531

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 154/448 (34%), Positives = 240/448 (53%), Gaps = 11/448 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEI---TQVVHPVPTKEKRRLLSAML 325

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 326 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 445

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK---KNYSSQ 416
           +E++   K+   +  +     P+ K    Q    R      +K+     R+   K     
Sbjct: 446 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--GQRTEQAESRKAPAHKHRRPAQKAGEQH 503

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           ++       E   K ++  + N      
Sbjct: 504 RAGAHASAGEAAPKPKRPFRSNGGQRAA 531


>gi|9790069|ref|NP_062667.1| spliceosome RNA helicase Ddx39b [Mus musculus]
 gi|51592092|ref|NP_579834.2| spliceosome RNA helicase Ddx39b [Rattus norvegicus]
 gi|61217662|sp|Q9Z1N5|DX39B_MOUSE RecName: Full=Spliceosome RNA helicase Ddx39b; AltName: Full=56 kDa
           U2AF65-associated protein; AltName: Full=DEAD box
           protein UAP56; AltName: Full=HLA-B-associated transcript
           1 protein
 gi|61252099|sp|Q63413|DX39B_RAT RecName: Full=Spliceosome RNA helicase Ddx39b; AltName: Full=56 kDa
           U2AF65-associated protein; AltName: Full=ATP-dependent
           RNA helicase p47; AltName: Full=DEAD box protein Uap56
 gi|4809332|gb|AAD30177.1|AC007080_3 BAT1 [Mus musculus]
 gi|4235116|gb|AAD13115.1| nuclear RNA helicase Bat1 [Mus musculus]
 gi|15029704|gb|AAH11067.1| HLA-B-associated transcript 1A [Mus musculus]
 gi|17529570|emb|CAC85694.1| putative RNA helicase [Rattus norvegicus]
 gi|22137623|gb|AAH24859.1| HLA-B-associated transcript 1A [Mus musculus]
 gi|26341686|dbj|BAC34505.1| unnamed protein product [Mus musculus]
 gi|26353988|dbj|BAC40624.1| unnamed protein product [Mus musculus]
 gi|32964852|gb|AAP91685.1| HLA-B associated transcript 1 [Mus musculus]
 gi|32964854|gb|AAP91686.1| HLA-B associated transcript 1 [Mus musculus]
 gi|51329823|gb|AAH80243.1| HLA-B associated transcript 1 [Rattus norvegicus]
 gi|149028103|gb|EDL83554.1| HLA-B-associated transcript 1A, isoform CRA_a [Rattus norvegicus]
          Length = 428

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 164/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 47  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY  N  + V      I  + +  K    
Sbjct: 107 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L +    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 167 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  I V+  +         +        K   L        
Sbjct: 227 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL--LDV 284

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 285 LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 344

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V   FN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 345 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 404

Query: 362 KLIEKKVDWLNGDLS 376
              E  +  L  ++ 
Sbjct: 405 DRFEVNISELPDEID 419


>gi|4758112|ref|NP_004631.1| spliceosome RNA helicase DDX39B [Homo sapiens]
 gi|18375623|ref|NP_542165.1| spliceosome RNA helicase DDX39B [Homo sapiens]
 gi|55742824|ref|NP_001005157.1| spliceosome RNA helicase DDX39B [Sus scrofa]
 gi|114050801|ref|NP_001040608.1| spliceosome RNA helicase DDX39B [Macaca mulatta]
 gi|166429536|ref|NP_001107635.1| spliceosome RNA helicase DDX39B [Pan troglodytes]
 gi|126309517|ref|XP_001368591.1| PREDICTED: similar to nuclear RNA helicase (DEAD family)
           [Monodelphis domestica]
 gi|194223324|ref|XP_001917652.1| PREDICTED: HLA-B associated transcript 1 [Equus caballus]
 gi|2500529|sp|Q13838|DX39B_HUMAN RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
           U2AF65-associated protein; AltName: Full=ATP-dependent
           RNA helicase p47; AltName: Full=DEAD box protein UAP56;
           AltName: Full=HLA-B-associated transcript 1 protein
 gi|38502870|sp|P60024|DX39B_PANTR RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
           U2AF65-associated protein; AltName: Full=DEAD box
           protein UAP56
 gi|47117788|sp|Q29024|DX39B_PIG RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
           U2AF65-associated protein; AltName: Full=DEAD box
           protein UAP56
 gi|61217531|sp|Q5RE47|DX39B_PONAB RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
           U2AF65-associated protein; AltName: Full=DEAD box
           protein UAP56
 gi|61217533|sp|Q5TM17|DX39B_MACMU RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
           U2AF65-associated protein; AltName: Full=DEAD box
           protein UAP56
 gi|587146|emb|CAA85523.1| nuclear RNA helicase (DEAD family) [Homo sapiens]
 gi|6624728|emb|CAB63856.1| putative RNA helicase [Sus scrofa]
 gi|12653187|gb|AAH00361.1| HLA-B associated transcript 1 [Homo sapiens]
 gi|15277213|dbj|BAB63306.1| putative ATP-dependent RNA helicase [Homo sapiens]
 gi|15278164|gb|AAH13006.1| HLA-B associated transcript 1 [Homo sapiens]
 gi|18181952|dbj|BAB83886.1| BAT1 [Pan troglodytes]
 gi|27544432|dbj|BAC54953.1| HLA-B associated transcript 1 [Homo sapiens]
 gi|32127769|dbj|BAC78161.1| ATP-dependent RNA helicase [Pan troglodytes]
 gi|32880161|gb|AAP88911.1| HLA-B associated transcript 1 [Homo sapiens]
 gi|55700773|dbj|BAD69728.1| HLA-B associated transcript-1 [Macaca mulatta]
 gi|55726381|emb|CAH89960.1| hypothetical protein [Pongo abelii]
 gi|55961688|emb|CAI18280.1| HLA-B associated transcript 1 [Homo sapiens]
 gi|56207984|emb|CAI18634.1| HLA-B associated transcript 1 [Homo sapiens]
 gi|57209767|emb|CAI41922.1| HLA-B associated transcript 1 [Homo sapiens]
 gi|61362641|gb|AAX42257.1| HLA-B associated transcript 1 [synthetic construct]
 gi|61362649|gb|AAX42258.1| HLA-B associated transcript 1 [synthetic construct]
 gi|86197992|dbj|BAE78637.1| HLA-B associated transcript 1 [Homo sapiens]
 gi|90085292|dbj|BAE91387.1| unnamed protein product [Macaca fascicularis]
 gi|90960864|dbj|BAE92779.1| nuclear RNA helicase [Pan troglodytes]
 gi|90960868|dbj|BAE92782.1| nuclear RNA helicase [Pan troglodytes]
 gi|119623809|gb|EAX03404.1| hCG2005638, isoform CRA_a [Homo sapiens]
 gi|119623812|gb|EAX03407.1| hCG2005638, isoform CRA_a [Homo sapiens]
 gi|119623813|gb|EAX03408.1| hCG2005638, isoform CRA_a [Homo sapiens]
 gi|119623814|gb|EAX03409.1| hCG2005638, isoform CRA_a [Homo sapiens]
 gi|119623815|gb|EAX03410.1| hCG2005638, isoform CRA_a [Homo sapiens]
 gi|119623816|gb|EAX03411.1| hCG2005638, isoform CRA_a [Homo sapiens]
 gi|119623818|gb|EAX03413.1| hCG2005638, isoform CRA_a [Homo sapiens]
 gi|123981956|gb|ABM82807.1| HLA-B associated transcript 1 [synthetic construct]
 gi|123996783|gb|ABM85993.1| HLA-B associated transcript 1 [synthetic construct]
 gi|150439288|emb|CAI17664.2| HLA-B associated transcript 1 [Homo sapiens]
 gi|162138207|gb|ABX82809.1| HLA-B-associated protein 1 [Sus scrofa]
 gi|168984808|emb|CAQ09974.1| HLA-B associated transcript 1 [Homo sapiens]
 gi|168985556|emb|CAQ10634.1| HLA-B associated transcript 1 [Homo sapiens]
 gi|168986089|emb|CAQ07176.1| HLA-B associated transcript 1 [Homo sapiens]
 gi|261859894|dbj|BAI46469.1| HLA-B associated transcript 1 [synthetic construct]
 gi|266634526|dbj|BAI49420.1| HLA-B associated transcript 1 [Microcebus murinus]
          Length = 428

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 164/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 47  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY  N  + V      I  + +  K    
Sbjct: 107 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L +    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 167 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  I V+  +         +        K   L        
Sbjct: 227 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL--LDV 284

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 285 LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 344

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V   FN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 345 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 404

Query: 362 KLIEKKVDWLNGDLS 376
              E  +  L  ++ 
Sbjct: 405 DRFEVNISELPDEID 419


>gi|92113266|ref|YP_573194.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
           DSM 3043]
 gi|91796356|gb|ABE58495.1| ATP-dependent RNA helicase CsdA [Chromohalobacter salexigens DSM
           3043]
          Length = 568

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 142/372 (38%), Positives = 213/372 (57%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L L   ++  +   GY  P+ IQ KTIP +L+  DV G AQTGTGKTA+F LP+L+
Sbjct: 10  TFAELSLPSTILSTLETLGYETPSLIQAKTIPALLEGRDVLGQAQTGTGKTAAFALPLLS 69

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+  R     P+ L+L PTRELA QVA +F +YG+       L +  G  +  Q   L 
Sbjct: 70  RLDLQRRE---PQVLVLAPTRELAQQVAASFVQYGRGVKGLEVLSLCGGQEYREQLSGLR 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++DH +RG L ++ +  LV+DEAD ML MGFI  ++ + S  P   Q 
Sbjct: 127 RGAQVIVGTPGRVIDHLDRGSLKLDGLNALVLDEADEMLRMGFIDDVKRVVSDTPKDAQR 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + FSAT+ DE+ ++  ++L +P RI + T + TAE IE   V                L 
Sbjct: 187 VFFSATLPDEISRIVNHYLVDPLRIAIETKTKTAEGIEQRLVRIEGGAK---LEALSRLL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             + +   I+F   +     L   L  +G +  A+ G++DQ  R + +   K G + +++
Sbjct: 244 EVEPVDAAIVFVRTRAACTTLVEQLLLRGVNAAALSGDLDQSLRERTVERLKRGKVDVLI 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+P + HVFN+D+P  AE Y HRIGRTGRAGR G A T     + + +  +
Sbjct: 304 ATDVAARGLDVPRITHVFNYDLPQDAEAYTHRIGRTGRAGRTGVAITFAGGREQRRVRDM 363

Query: 361 EKLIEKKVDWLN 372
           E++  +++  + 
Sbjct: 364 ERVTGQQMQEVE 375


>gi|324505328|gb|ADY42291.1| ATP-dependent RNA helicase DDX27 [Ascaris suum]
          Length = 688

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 144/431 (33%), Positives = 230/431 (53%), Gaps = 14/431 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  + LS  ++ AV   G+ KPTPIQ   IPL L   D+C  A TGTGKTA+F+LP+L
Sbjct: 145 VSFEYMNLSRPMLKAVGACGFTKPTPIQAACIPLALAGRDLCACAATGTGKTAAFMLPIL 204

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  + R L+L PTRELA QV        +   + + L  GG+  +AQ   L 
Sbjct: 205 ERLLFKPKQKSVTRVLVLVPTRELAMQVFHVTRLLSQFSQVEICLCAGGLDIKAQEAALR 264

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            G D++I TPGR++DH  N     +++IE+LV+DEADRMLD  F   ++ +  L    RQ
Sbjct: 265 LGPDIVIATPGRLIDHLHNAPNFSLHDIEVLVLDEADRMLDEAFADQMKELIRLCSANRQ 324

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATMTD++++++   L+NP RI +N  + TA  +   F+     +  +   +   L
Sbjct: 325 TLLFSATMTDQIEQLAAVSLKNPVRIFINENTETALNLRQEFIRIRENHEHERESIVVAL 384

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++    + ++F   K+    L   L   G  V  +H  + Q  R++ LS FK   + L+
Sbjct: 385 VTRIFPDHTMLFVQTKRACQRLHIILGLLGIKVGQLHSGLSQTQRVETLSRFKNAELDLL 444

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++DLAARGLDI  V  V N  +P   + YIHR+GRT RAGR G++ +L    D K +  
Sbjct: 445 ISTDLAARGLDIEGVLTVINMQMPASLKQYIHRVGRTARAGRVGRSVSLFGAADRKLLKE 504

Query: 360 I----------EKLIEKK-VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           I          ++ I+   ++  +  +++L   +++++  +   A +   + ++      
Sbjct: 505 IVATHKGAPLKQRRIDAGVIEAYSKRIAALEESIQRVE--EEFKAERALRLAEEELQRGE 562

Query: 409 RKKNYSSQKSH 419
            K   ++QK H
Sbjct: 563 DKLQGNAQKRH 573


>gi|289616811|emb|CBI56474.1| unnamed protein product [Sordaria macrospora]
          Length = 586

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 120/390 (30%), Positives = 197/390 (50%), Gaps = 7/390 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF++L LS K + A+ + G+ K T IQ + IP +L   DV G A+TG+GKT +F++P + 
Sbjct: 115 DFSELNLSEKTMKAIAEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 174

Query: 62  ILEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + R     I+  PTRELA Q+     +  KN++ T  ++IGG    A+ +KL 
Sbjct: 175 MLSSLRFKPRNGTGAIVVTPTRELALQIFGVARELMKNHSQTYGVVIGGANRRAEAEKLG 234

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G ++LI TPGR+LDH      +  N+  L+IDEADR+L++GF   ++ I  ++P   + 
Sbjct: 235 KGVNLLIATPGRLLDHLQNTPFVFKNMRSLIIDEADRILEIGFEDEMRQIIKILPKEDRQ 294

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSAT T +++ ++   L+               T+E          + K  LL    
Sbjct: 295 TMLFSATQTTKVEDLARISLRPGPLYVNVDEEKQFSTVEGLDQGYVVVDADKRFLLLFSF 354

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   K  I+F +   +V      L+     V  +HG   Q+ R      F   T   +
Sbjct: 355 LKKMQKKKVIVFFSSCNSVKYYSELLQYIDLQVLDLHGKQKQQKRTNTFFEFCNATQGTL 414

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHID 358
           + +D+AARGLDIP V  +  FD P+   +YIHR+GRT R     G++   +   ++  + 
Sbjct: 415 ICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGNNTKGRSLLFLQPNELGFLA 474

Query: 359 AIEKLIEKKV---DWLNGDLSSLNPPLEKI 385
            + K  +  V   D+    + ++   LEK+
Sbjct: 475 HL-KAAKVPVVEYDFPKSKILNVQSQLEKL 503


>gi|242002440|ref|XP_002435863.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215499199|gb|EEC08693.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 494

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 141/394 (35%), Positives = 211/394 (53%), Gaps = 12/394 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-L 60
            F +  L+  +   +  A Y  PTP+Q   IP++L + D+   AQTG+GKTA+F++P+  
Sbjct: 85  SFDECSLTEIIRVNIELAHYTCPTPVQKHAIPIILAKRDLMACAQTGSGKTAAFLVPILN 144

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + E G  + + P  LIL PTRELA Q+ +   K+     +   ++ GG     Q K L+
Sbjct: 145 QVFEDGPPKNQYPLALILSPTRELACQIYEEACKFAYRSRVRPCVVYGGADPMQQMKDLD 204

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT----SLVPF 176
           RG  +L+ TPGR++D   RGK+ +  +  LV+DEADRMLDMGF P I+ I          
Sbjct: 205 RGCHLLVATPGRLVDMMERGKVSLELVRYLVLDEADRMLDMGFEPQIRRIVLEDNMPPVG 264

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL+FSAT   ++Q+++  FL N   + V    ST+E I    V       +   L  
Sbjct: 265 QRQTLMFSATFPKKVQELARKFLDNYIFLAVGRVGSTSENITQKVVWVEEHDKRSFLLDL 324

Query: 237 QLLQSQDTMKNG-------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
                  T           + F   KK   +L H L K+G+ V +IHG+  QR R   L 
Sbjct: 325 LNAAGLRTGSQAALSDSLTLTFVETKKGADSLEHFLMKEGYPVTSIHGDRSQREREDALW 384

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F++G   ++VA+ +AARGLDIP+V HV NFD+P+  E Y+HRIGRTGR G  G A +  
Sbjct: 385 SFRKGHTPILVATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFF 444

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
            +++      + +LI +    L   L++L   ++
Sbjct: 445 NEKNRNMALDLVELITETKQELPDWLAALAKEVQ 478


>gi|190571463|ref|YP_001975821.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|190357735|emb|CAQ55186.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
          Length = 408

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 152/421 (36%), Positives = 221/421 (52%), Gaps = 22/421 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++GL   +  A+       PTPIQ++ IPL LQ  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   NFHEMGLPTLLRQALSKNNLCVPTPIQVQAIPLALQGKDILGSAQTGTGKTLAFAIPLVA 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEK-YGKNYNLTVALLIGGIPFEAQNKKLE 120
            L        +   L++ PTRELA QV     K   ++  L VALLIGG P   Q  +L+
Sbjct: 63  KL---MNEPSIGSALVIVPTRELAHQVTSEIRKLLSQSSLLRVALLIGGEPIFRQLNQLQ 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++I TPGRI+DH  R  L+  N+ ILV+DE DRM DMGF   I+ I   +P  RQT
Sbjct: 120 KKPQIIIGTPGRIIDHIERKTLVTRNVGILVLDETDRMFDMGFGIQIEEIMKHLPKIRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+  E+ K++E +L  P+R           T            S+     + + Q
Sbjct: 180 LMFSATLPGEIVKLTEKYLNQPER----VSVDCQATTSVKIKQEVVYASESEKYGKLVTQ 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + IIF   K+    L   L K  +S  AIHG++ Q  R +++ +F+ G  Q+MV
Sbjct: 236 LCQRKGSIIIFVKTKRGADQLADKLHKDDYSALAIHGDLRQHKRERVIDSFRRGRNQIMV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP + HV N+DVP    +Y+HRIGRT RAG  G A + V  +D + + A+
Sbjct: 296 ATDVASRGLDIPHIQHVINYDVPQSQADYVHRIGRTARAGAEGFALSFVTPQDKRRLPAL 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK-STGFDRRKKNYSSQKSH 419
                 K    N D S           +Q  +++K    P      + R+K N   +KS 
Sbjct: 356 AD----KEGEPNFDCSM---------QSQKRNSKKIFKRPSTLKAKYGRKKINVFKKKSR 402

Query: 420 I 420
           +
Sbjct: 403 V 403


>gi|61679617|pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
          Length = 386

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 164/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 10  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY  N  + V      I  + +  K    
Sbjct: 70  LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP 129

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L +    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 130 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 189

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  I V+  +         +        K   L        
Sbjct: 190 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL--LDV 247

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 248 LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 307

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V   FN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 308 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 367

Query: 362 KLIEKKVDWLNGDLS 376
              E  +  L  ++ 
Sbjct: 368 DRFEVNISELPDEID 382


>gi|302758696|ref|XP_002962771.1| hypothetical protein SELMODRAFT_165331 [Selaginella moellendorffii]
 gi|300169632|gb|EFJ36234.1| hypothetical protein SELMODRAFT_165331 [Selaginella moellendorffii]
          Length = 786

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 126/380 (33%), Positives = 217/380 (57%), Gaps = 3/380 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLSP +  A+   GY  PTPIQ KT+PL+L  +DV  +A+TG+GKTA+F++PML  
Sbjct: 26  FESLGLSPPIYQAIRKKGYSVPTPIQRKTLPLILAGNDVVAMARTGSGKTAAFLIPMLEK 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +    R LIL PTRELA Q     ++ G+N +L + +L+GG   E Q ++L + 
Sbjct: 86  LRAHSPKPGA-RALILSPTRELALQTFKFCKELGRNTDLRITVLVGGDSMETQFEQLSKN 144

Query: 123 ADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D+LI TPGR++ H      + + ++E +V DEADR+ +MGF   ++ I + +   RQTL
Sbjct: 145 PDILIATPGRLMHHLSEVEGMSLKSVEYVVFDEADRLFEMGFAEQLRQILTQLHELRQTL 204

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L   ++  L++P  + ++T +  +  +      T  +  K   L+  L + 
Sbjct: 205 LFSATLPRLLADFAKAGLKDPLTVRLDTETKISPDL-KLAFFTMRKEEKLACLVHLLREV 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  ++F + K +V  L   L+ +G  +  ++G +DQ +R   ++ F+     +++ 
Sbjct: 264 VSAEQQTVVFVSTKHHVEFLFEVLKSEGIDLAVVYGAMDQTARKINVAKFRARKTMILLV 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP + +V NFD P + + ++HR+GR  RAGR G A++ +  +++ ++  + 
Sbjct: 324 TDVAARGIDIPLLDNVVNFDFPAKPKLFVHRVGRAARAGRTGTAYSFLTSDELPYLLDLH 383

Query: 362 KLIEKKVDWLNGDLSSLNPP 381
             + K V     +   ++ P
Sbjct: 384 LFLSKPVRPAPTEEDIVSSP 403


>gi|296116226|ref|ZP_06834844.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977332|gb|EFG84092.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 406

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 127/374 (33%), Positives = 197/374 (52%), Gaps = 6/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + GL+  V   +   G   P+PIQI+ IP +L   DV GIA TGTGKT +F  P+  
Sbjct: 35  SFVETGLTAPVRDNLSRMGVRIPSPIQIQAIPPILSGRDVEGIAPTGTGKTIAFAAPLTQ 94

Query: 62  ILEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L             I+   PTRELA Q    +    K   L V + IGG+P   Q + L
Sbjct: 95  RLLGAPHERIPHVARIICLSPTRELANQTGGAWRGCAKGTGLKVVVTIGGVPRARQVRDL 154

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GAD+L+ TPGR++D  + G ++ +    LV+DEADRMLD+GFI  + +I S +P T Q
Sbjct: 155 EAGADILVATPGRLVDLLSDGAVVADATTALVVDEADRMLDLGFIDDMMSIASRLPVTHQ 214

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E+  +    L  P R++V+T  +    I    +    ++     L   + 
Sbjct: 215 TLLFSATMPAEIVDLGRRLLHRPVRVKVDTADAPPPRIRQQVMFIPPRHK----LGALVS 270

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++   + +   +   +   +  +   +HG   Q  R + L +F++  + ++
Sbjct: 271 FLSTHPSRRVLIFTETRRQADDLANALGREMTCGVMHGEHTQARRERTLRDFRDHKLHVL 330

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+ ARG+D+ DV  V N+D+P +AE Y+HRIGRT RAGR G A +L A E+   +  
Sbjct: 331 IATDVMARGIDVEDVMLVVNYDIPRQAEAYVHRIGRTARAGRQGSALSLCAPEERLLLKD 390

Query: 360 IEKLIEKKVDWLNG 373
           IE++   ++  ++ 
Sbjct: 391 IERVTGARLKAIDP 404


>gi|295676852|ref|YP_003605376.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
 gi|295436695|gb|ADG15865.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 544

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 145/404 (35%), Positives = 218/404 (53%), Gaps = 26/404 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLS +VV A+  AGY  PTP+Q + +P  +   D+   + TG+GKTA+F+LP + 
Sbjct: 37  SFASLGLSAEVVSALTAAGYEHPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96

Query: 62  ILEK---------------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN 100
              +                         V  P  L+L PTRELA QV      YGK+  
Sbjct: 97  RFAQLQKAQASQPREPRPADGGRGRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLK 156

Query: 101 L-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159
                 ++GG+ +  Q   L +  ++L+ TPGR++DH  RG++ ++ ++ILV+DEADRML
Sbjct: 157 RLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRML 216

Query: 160 DMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
           DMGFI  I  I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+         I  
Sbjct: 217 DMGFIDDIDTIVAETPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRTNISQ 276

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                  +  K    L   L   D +   I+F   K +   L   L   GF   A+HG++
Sbjct: 277 TVHYVDDRDHKDR--LLDHLLRADGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDL 334

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTGRA
Sbjct: 335 PQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRA 394

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381
           GR G A +LV   +   +  IE+ +     V+ + G      PP
Sbjct: 395 GRSGIAVSLVHHAEQGALKRIERFVRTPLPVNVVEGFEPRKAPP 438


>gi|74191640|dbj|BAE30391.1| unnamed protein product [Mus musculus]
          Length = 622

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 195/389 (50%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G + PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 182 SFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDSLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 361

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 362 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKE 417

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 538 KACDESVLMDLKALLLEAKQKVPPVLQVL 566


>gi|47206563|emb|CAF94489.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 490

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 97/381 (25%), Positives = 178/381 (46%), Gaps = 13/381 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 105 SFEELRLKPQLLQGVYSMGFNRPSKIQETALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 164

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++      + P+ L + PT ELA Q     E+ G+ Y+    +         +  KL
Sbjct: 165 LSHVDPS---KKYPQCLCVSPTYELALQTGKVIEQMGQYYSEVKLVYAIRGNKMPKGTKL 221

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +             +          ++ +    +   G       I  ++P + Q
Sbjct: 222 QEQIVIGTPGTVLDWCGKFKFFDPKKIRVFVLDEADVMIDTQGHQDQSIRIQRMLPQSCQ 281

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  + + K ++  + +P  I++     T +TI+  +V   ++  K        +
Sbjct: 282 MLLFSATFEESVWKFAKRIVPDPNIIKLKREEETLDTIKQYYVLCNSREEKF--QALCNI 339

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   IIFC+ +K    L   L ++   V  + G +    R  ++  F++G  +++
Sbjct: 340 YGAITIAQAIIFCHTRKTAGWLAGELSRENHQVAVLSGEMQVEQRAAVIERFRDGKEKVL 399

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V   +
Sbjct: 400 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAINMVGNTN 459

Query: 354 IKHIDAIEKLIEKKVDWLNGD 374
           +  +  I++   KK++ L+ D
Sbjct: 460 MNILKKIQEHFNKKIEKLDTD 480


>gi|86138673|ref|ZP_01057246.1| putative ATP-dependent RNA helicase protein [Roseobacter sp.
           MED193]
 gi|85824733|gb|EAQ44935.1| putative ATP-dependent RNA helicase protein [Roseobacter sp.
           MED193]
          Length = 431

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 137/366 (37%), Positives = 224/366 (61%), Gaps = 5/366 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +GL  +V+  + D G   PTPIQ + IP  L   DV G+AQTGTGKTA+F +P+++ +  
Sbjct: 1   MGLPDQVLARLADMGLKDPTPIQARAIPHALNGEDVLGLAQTGTGKTAAFGVPLISRMLD 60

Query: 66  GRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
              +      R L+L PTRELA Q+A   +   +   + + L++GG+    Q +++ RG 
Sbjct: 61  YGRKPAAHTVRGLVLAPTRELANQIAATLKALTEGTPMKIGLVVGGVSINPQIQRISRGT 120

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
           D+L+ TPGR+LD  +R  L + + + LV+DEAD+MLD+GFI  ++ I+SL+P  RQT+LF
Sbjct: 121 DILVATPGRLLDILDRNALDLGSCDFLVLDEADQMLDLGFIHALRKISSLLPEERQTMLF 180

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM  ++ +++ ++L  P RI     +   +       + +     +   L + L ++ 
Sbjct: 181 SATMPKQMNEIANSYLNRPVRI---EVTPPGKPAAKVTQSVHFIAKAEKLSLLKELLTEH 237

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +  ++F   K  +  L   LEK GF+  AIHGN  Q  R + L+ FK G I+++VA+D
Sbjct: 238 KDERTLVFGRTKHGMEKLMKVLEKSGFAAAAIHGNKSQGQRERALAAFKSGQIKVLVATD 297

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARGLDIPDV +V+N+++PN  + Y+HRIGRT RAG+ G+A    + ++++ + AI+K+
Sbjct: 298 VAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCSPDEMEELKAIQKV 357

Query: 364 IEKKVD 369
           ++  + 
Sbjct: 358 MKITIP 363


>gi|156841974|ref|XP_001644357.1| hypothetical protein Kpol_513p15 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114998|gb|EDO16499.1| hypothetical protein Kpol_513p15 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 501

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 105/391 (26%), Positives = 186/391 (47%), Gaps = 8/391 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DL LS   + A+   G+   TP+Q +TIP +L   DV G A+TG+GKT +F++P + 
Sbjct: 38  NFKDLKLSDPTLKAIEKMGFTSMTPVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 97

Query: 62  ILEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-L 119
           +L   + + R    +I + PTRELA Q+     +  + ++ T  ++IGG     + +K +
Sbjct: 98  MLHSLKFKPRNGTGVIVITPTRELALQIFGVVRELMEFHSQTFGIVIGGANRRQEAEKLI 157

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    ++      +    N    +  N++ LVIDEADR+L++GF   ++ I  ++P   +
Sbjct: 158 KGVNMLVATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEDEMKQIIKILPNEDR 217

Query: 180 TLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             + FSAT T +++ ++   L+               T +          S K  LL   
Sbjct: 218 QSMLFSATQTTKVEDLARISLRKGPLFINVVTERDTSTADGLEQGYVVCESDKRFLLLFS 277

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +   +V      L      V  +HG   Q+ R      F      +
Sbjct: 278 FLKRNQKKKIIVFLSSCNSVRYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGI 337

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHI 357
           +V +D+AARGLDIP V  +  FD P+   +YIHR+GRT R  +  GK+   +   ++  +
Sbjct: 338 LVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNELGFL 397

Query: 358 DAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
             + K  +  ++        ++++   LEK+
Sbjct: 398 RYL-KAAKVPLNEFEFPTNKIANVQSQLEKL 427


>gi|304437212|ref|ZP_07397172.1| ATP-dependent RNA helicase DeaD [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304369704|gb|EFM23369.1| ATP-dependent RNA helicase DeaD [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 426

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 138/432 (31%), Positives = 218/432 (50%), Gaps = 11/432 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+S  +   +   G  +PTP+Q + IP +    DV   AQTGTGKT +++LP+L  
Sbjct: 4   FDQLGISETLTALLQKQGITQPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLAYLLPLLAR 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++   A  +    L++ PTRELA Q+    E   +   +   ++ GG   E Q +KL R 
Sbjct: 64  IKPQGAAAQ---ALVIAPTRELAIQIERVAEPLAQPLGIGTVVIYGGADIERQKEKLRRS 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++I TPGR+LDH  RG L + ++  +V+DEAD ML MGFI  ++ +        Q  L
Sbjct: 121 PQLVIGTPGRLLDHVRRGTLALGSVNKVVLDEADEMLKMGFIEDVETLLGAAAQDYQLAL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + + ++++ F+ NP  I +   + T   IE   +   A              ++
Sbjct: 181 FSATMPERIVRLTKRFMTNPAHIRLAGETVTLAAIEQVVIPVSAGDK---LDRLCASINE 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     ++FC  K+    L   L ++G+ V A+ G++ Q  R  +L  F+   +Q++ A+
Sbjct: 238 EAPYLAMVFCATKERTRALMMELAQRGYLVDALSGDLTQTQRSFVLRQFRSAKLQILCAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P    +YIHRIGRTGRAG  GKA TLVA    + +  +E 
Sbjct: 298 DIAARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGTQGKAITLVAPHQHEKLRKMEA 357

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPL 422
            ++     L  D+  +         A    A+K    P+ +      K+  S  +S    
Sbjct: 358 ALKA---CLRRDV--VKKKKRPAPPAGEGDAQKKAHPPRDAKRRALPKRTKSKPRSKKAG 412

Query: 423 KESEKISKLQQD 434
           K    I +  + 
Sbjct: 413 KTVTNIGRRSRK 424


>gi|302822183|ref|XP_002992751.1| hypothetical protein SELMODRAFT_448879 [Selaginella moellendorffii]
 gi|300139492|gb|EFJ06232.1| hypothetical protein SELMODRAFT_448879 [Selaginella moellendorffii]
          Length = 733

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 112/412 (27%), Positives = 196/412 (47%), Gaps = 20/412 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+  ++V A    G+  PTPIQ++ +PL LQ  D+ G+AQTG+GKTA+F LP+L 
Sbjct: 175 SFGELGVREELVDACTKLGWKAPTPIQVEALPLALQGRDLIGLAQTGSGKTAAFALPILQ 234

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +           +L PTRELA Q+++ FE  G    +    ++GG+    Q   L +
Sbjct: 235 ALFQQCHPFF---ACVLSPTRELAIQISEQFEALGSQIGVRSVAIVGGVSMVDQAVALGK 291

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +    N     + N++ LV+DEAD++L   F   +  I  +VP  R+T
Sbjct: 292 NPHIVVATPGRLLDHLTNTKGFSLRNVKYLVLDEADKILHNDFEKEVDEILKVVPRERKT 351

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT+++ K+    L+NP ++EV++  +TA T++  +V   A++     +      
Sbjct: 352 FLFSATMTNKVAKLQRACLRNPTKVEVSSKYTTALTLKQEYVFVPAKHKDCYFVF----- 406

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++        +    + +        +         +    +  + +  L+ 
Sbjct: 407 --------LLNEMAGSTAMVFTRTCDSTRRLALILRSLGFGAIPISGQMSQSKRSGALLK 458

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
                   L   DV      D+P+   +YIHR+GRT RAGR G+A ++V + D+     I
Sbjct: 459 FKAGDRNLLICTDVA-SRGLDIPSVDVDYIHRVGRTARAGRSGRAISIVTQYDVDLYKRI 517

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           E LI   +         +    E++  AQ   A   +   + ++   ++++N
Sbjct: 518 EDLIGMTLPEFPAKADEVLLLEERVSEAQRLAA--MHIREKDASKKSKKRRN 567


>gi|227494914|ref|ZP_03925230.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
 gi|226831366|gb|EEH63749.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
          Length = 528

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 136/427 (31%), Positives = 216/427 (50%), Gaps = 18/427 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD G++ ++  A+   G   P PIQ  T+P+ L   D+ G A+TGTGKT  F LP L 
Sbjct: 43  TFADFGINTEICDALSAKGITYPFPIQALTLPVALAGRDIIGQAKTGTGKTLGFGLPTLM 102

Query: 62  ILE--------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
            +                 P+ +++ PTREL  QVA +     K  ++ +  + GG  FE
Sbjct: 103 KVHGPASAKYATEVHYQGHPQAMVIVPTRELCKQVAADLRAAAKQTSVRITEIYGGAAFE 162

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L +G D+++ TPGR++D   R  L ++ +  +V+DEAD MLD+GF+P ++ + S 
Sbjct: 163 PQIDALTKGTDLIVGTPGRLIDLLKRKVLQLHGVNTVVLDEADEMLDLGFLPDVEILLSR 222

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           VP TRQT+LFSATM  E+  ++  +++ P  I          T++      Y  ++    
Sbjct: 223 VPQTRQTMLFSATMPGEIVALARRYMKQPTHIRAQEADDQGATVKTVKQVIYRCHALNKI 282

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            +   +         +IF   K+    L   L  +GF+V ++HG++ Q +R + +  F+ 
Sbjct: 283 EVVARILQARERGLAVIFTKTKRTAATLSEDLSARGFAVASLHGDLGQGAREQAMRAFRS 342

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G + ++VA+D+AARG+D+ DV HV N+  P   + Y+HRIGRTGRAG  G A T V  +D
Sbjct: 343 GKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYLHRIGRTGRAGASGTAVTFVDWDD 402

Query: 354 IKHIDAIEKLIEKKVDW-------LNGDLSSLNPPLE---KIDIAQHNHARKNNPIPQKS 403
           +     I K +   V              + L+ P E   ++  A+   A  +    Q  
Sbjct: 403 VPRWGLISKALNLGVPEPLETYHTSPHLYTDLDIPTEVSGRLPRAKRTRAGLDAEEYQDV 462

Query: 404 TGFDRRK 410
           +G  RR 
Sbjct: 463 SGKGRRS 469


>gi|62897383|dbj|BAD96632.1| HLA-B associated transcript 1 variant [Homo sapiens]
          Length = 428

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 164/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 47  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY  N  + V      I  + +  K    
Sbjct: 107 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L +    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 167 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  I V+  +         +        K   L        
Sbjct: 227 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL--LDV 284

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 285 LEFNRVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 344

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V   FN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 345 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 404

Query: 362 KLIEKKVDWLNGDLS 376
              E  +  L  ++ 
Sbjct: 405 DRFEVNISELPDEID 419


>gi|58697110|ref|ZP_00372550.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58698416|ref|ZP_00373327.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225630895|ref|YP_002727686.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia sp.
           wRi]
 gi|58535071|gb|EAL59159.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58536598|gb|EAL59931.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225592876|gb|ACN95895.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia sp.
           wRi]
          Length = 402

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 153/416 (36%), Positives = 220/416 (52%), Gaps = 20/416 (4%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +GL   +  A+       PTPIQI+ IPL LQ  D+ G AQTGTGKT +F +P++  L  
Sbjct: 1   MGLPASLRQALDKNNLFVPTPIQIQAIPLALQGKDILGSAQTGTGKTLAFAIPLVAKL-- 58

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEK-YGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
                     L++ PTRELA QV +   K   +N  L VALLIGG P   Q  +L++   
Sbjct: 59  -LNEPNTGSALVIVPTRELAHQVTNEIRKLLSQNSALRVALLIGGEPIFRQLNQLQKKPQ 117

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           ++I TPGRI+DH  R  L+  N+ +LV+DE DRM DMGF   I+ I   +P  RQTL+FS
Sbjct: 118 IVIGTPGRIIDHIERKTLITRNVSVLVLDETDRMFDMGFGVQIEEIMKHLPKIRQTLMFS 177

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT+  ++ K++E +L  P+RI V+       T            S+     + + Q    
Sbjct: 178 ATLPGDIVKLAEKYLNRPERISVD----CEVTTSVKIKQEIVYASESEKYEKLVTQLCQR 233

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             + IIF   K+    L H L K  +S  AIHG++ Q  R +++++F+ G  Q+MVA+D+
Sbjct: 234 EGSIIIFVKTKRGADQLAHRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDV 293

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           A+RGLDIP + HV N+D P    +YIHRIGRT RAG  G A + V  +D + +  +    
Sbjct: 294 ASRGLDIPHIQHVINYDAPQSQADYIHRIGRTARAGAEGYALSFVTPQDKRRLPVLAD-- 351

Query: 365 EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
             K   LN D S        +   + N  +         T + R+K N   +KS +
Sbjct: 352 --KEGELNFDCS--------VQFKKRNSKKVFKRPSTLKTKYGRKKINAFKKKSRV 397


>gi|149370417|ref|ZP_01890106.1| possible ATP-dependent RNA helicase [unidentified eubacterium
           SCB49]
 gi|149355968|gb|EDM44525.1| possible ATP-dependent RNA helicase [unidentified eubacterium
           SCB49]
          Length = 450

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 141/444 (31%), Positives = 231/444 (52%), Gaps = 8/444 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++L L  ++   + D G   PTPIQ ++  ++    D+ GIAQTGTGKT +++LP+L
Sbjct: 2   ITFSELKLGKQLQYGIDDLGITHPTPIQEQSFSVIKAGKDMVGIAQTGTGKTFAYMLPVL 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    R   PR L+L PTREL  QV +  EK GK  ++ V  + GG+      + + 
Sbjct: 62  ETLKYS--REINPRVLVLVPTRELVVQVVEEIEKLGKYLSVRVTGVYGGVNINTHKQAVA 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G DV++ TPGR+ D      + + NI+ L+IDE D MLD+GF   I NI  L+P  RQ 
Sbjct: 120 QGCDVVVATPGRLYDLALSRAVSLKNIKKLIIDEVDVMLDLGFRFQITNIFELLPERRQN 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTD+++ + ++F ++P++I V    +  + IE         Y+K   L   L  
Sbjct: 180 ILFSATMTDDVENLIDDFFKSPEKISVAVSGTPLDNIEQQSYVVKNFYTKANLLNHLLKD 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   K  +   N+++         +     V  IH N  Q  R++ + NF  G  ++++
Sbjct: 240 KEAFTKVLVFVPNKRQADTLYQVVDDFYPDQVSVIHSNKTQNYRLRSIENFNAGKKRILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D+ +RGLD+  + HV N DVP  AENY+HRIGRTGRA   GK+     +++    +AI
Sbjct: 300 STDVMSRGLDLDRITHVVNMDVPRYAENYMHRIGRTGRAEAQGKSILFSTEKEALLKEAI 359

Query: 361 EKLIEKKVDWLNG----DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           E L++  +  +      ++S    P E+  + + N+  K +        F  + +  S +
Sbjct: 360 ETLMDYTIPLIPIPEEVEVSDKLLPEERPQVHEPNNPHKVSDAHVPGASFHEKSEKNSKE 419

Query: 417 KS--HIPLKESEKISKLQQDIQEN 438
                   K + K  K +    +N
Sbjct: 420 NRGGSYQYKIAAKYKKPKTRGDKN 443


>gi|73969115|ref|XP_860773.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 13 [Canis
           familiaris]
          Length = 624

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 125/379 (32%), Positives = 193/379 (50%), Gaps = 29/379 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        V+  ++D  + +PTPIQ +  PL L   D+ GIAQTG+GKT +++LP +  
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA QV    + YG                        
Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGVE---------------------- 191

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               + I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQT
Sbjct: 192 ----ICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 247

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E+++++E+FL++  +I V     +A       V    +  K   L+Q + +
Sbjct: 248 LMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 307

Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIF   K+   +L   + + G+    IHG+  Q  R  +L+ F+ G   ++
Sbjct: 308 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 367

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD+ DV  V N+D PN +E+Y+HRIGRT R+   G A+T     ++K    
Sbjct: 368 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 427

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K++E+    +N  L  L
Sbjct: 428 LIKVLEEANQAINPKLMQL 446


>gi|307545623|ref|YP_003898102.1| ATP-dependent RNA helicase RhlB [Halomonas elongata DSM 2581]
 gi|307217647|emb|CBV42917.1| ATP-dependent RNA helicase RhlB [Halomonas elongata DSM 2581]
          Length = 474

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 125/371 (33%), Positives = 190/371 (51%), Gaps = 5/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L   ++ A+   G+   TPIQ + +   L   DV G AQTGTGKTA+F++ +L  
Sbjct: 96  FHDFDLPLPLMRAIHAQGFEYCTPIQAEALTHTLLGGDVVGKAQTGTGKTAAFLISILAY 155

Query: 63  L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                     +   PR LI+ PTRELA Q+  + +   +  NL VA ++GG+ ++ Q   
Sbjct: 156 FLEEEAPDGQKPGAPRALIVAPTRELALQIEKDAKALARFTNLNVASVVGGMDYQKQRDG 215

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+L+ TPGR+LD   +  + +  +E+LV+DEADRML MGFIP ++ I    P   
Sbjct: 216 LGKKLDLLVATPGRLLDFHQKRDVDLTQVEVLVLDEADRMLSMGFIPDVKRIIRHTPKKE 275

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +   F  + T     +     Q            T +         Y         L   
Sbjct: 276 ERQTFLFSAT-FTDDILNLAGQWTHEPAHVDIEVTVDNAADIDQRVYLVSDDDKERLLVK 334

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  Q++    ++F N++  V  L   L K   +V  + G++ Q  R++ L  F+EG IQ+
Sbjct: 335 LLQQESFDRVMVFGNRRDLVRKLDGLLRKADINVAMLSGDVPQNQRIRTLEQFREGEIQV 394

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A RG+ I DV HV N+ +P   E+Y+HRIGRTGRAG  G + + V +ED   + 
Sbjct: 395 LVATDVAGRGIHIEDVSHVINYTLPEDPEDYVHRIGRTGRAGAKGVSISFVGEEDAFSLP 454

Query: 359 AIEKLIEKKVD 369
            IE+ I  K+ 
Sbjct: 455 EIERFINDKLP 465


>gi|225873935|ref|YP_002755394.1| ATP-dependent RNA helicase [Acidobacterium capsulatum ATCC 51196]
 gi|225793658|gb|ACO33748.1| ATP-dependent RNA helicase [Acidobacterium capsulatum ATCC 51196]
          Length = 430

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 133/433 (30%), Positives = 214/433 (49%), Gaps = 9/433 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L LS  +   +    +V PTP+Q   IP  ++  DV   AQTGTGKT  F+LP +
Sbjct: 1   MQFSELNLSSHLKNQLAVNQFVTPTPVQEAAIPPAMEGKDVLATAQTGTGKTLGFLLPAM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     + + P  LIL PTRELA QV   + +         A LIGG     Q + L+
Sbjct: 61  ERLL--ATKGKHPAVLILTPTRELALQVEKQYAQLAGKSLPQAATLIGGASENNQIRDLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ D   R  + +  IE+LV+DEADRMLDMGFIP I+ I + +P  RQT
Sbjct: 119 AGARLIVATPGRLEDFLERRLIDLKRIEVLVLDEADRMLDMGFIPAIRRIVAKLPRQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + FSAT+   +  + +  L NP R+   +   T+ +          +             
Sbjct: 179 MCFSATIDPAVAHLLDEILTNPVRLSFGSTQQTSSS----VRLIAYEVDADQKAALVHRV 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F   K+   ++   L++ G SV  +HG+  Q  R + L +F+ G  +++V
Sbjct: 235 VTAEEGQSLVFVGTKRRTEHVAKRLDRAGISVAVLHGDRSQSQRNRALEDFQRGRARVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RG+ + ++  V N+D+P   E++IHR GRTGRAG  G A T     + +  +  
Sbjct: 295 ATDVASRGIHVDNIAQVINYDMPKMTEDFIHRAGRTGRAGATGVAATFYTPLERREFNRF 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN---NPIPQKSTGFDRRKKNYSSQK 417
           EK + +K++ +     S     E+  +  H    +     P   +  G  + K   ++  
Sbjct: 355 EKTLNRKIERVMIASDSGLDREERGQMVNHAPVLRMATVAPTKPRGKGKGKSKAPAAAAP 414

Query: 418 SHIPLKESEKISK 430
                 E E++ +
Sbjct: 415 QQRVYLEGERLQR 427


>gi|42522912|ref|NP_968292.1| ATP-dependent RNA helicase DbpA [Bdellovibrio bacteriovorus HD100]
 gi|39574108|emb|CAE79285.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 505

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 209/367 (56%), Gaps = 9/367 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ L LSP+++  V + G+   TPIQ ++IPL+L   D+ G A+TG+GKTA+F LP+L 
Sbjct: 48  EFSTLPLSPELLTVVQELGFETLTPIQQESIPLLLAGKDIIGQAKTGSGKTAAFSLPILN 107

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            +   +  ++    LIL PTRELA+QV     K G+      V  + GG     Q   LE
Sbjct: 108 KINLDQPLLQ---ALILCPTRELASQVVTEIRKLGRRLPGLKVLAMTGGQSGREQADALE 164

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGR+ D   R ++ ++ ++ +V+DEAD+MLDMGF   I+ +   +P +RQT
Sbjct: 165 NGVQIVVGTPGRLADFVGRNRIDLSAVKTVVLDEADKMLDMGFADEIKTVMRDLPGSRQT 224

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT  + ++ +S  + ++ +++ +       E         Y         +   + 
Sbjct: 225 VLFSATFPESIEHLSRKYQRHAQQVIIED-----EEQNLIEQLVYDSEDNDKTNVLMRIL 279

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q    + IIFCN K  V  +   L   G +   +HG+++QR R ++++ F+ G+ +++V
Sbjct: 280 QQHPSDSTIIFCNTKNAVAEIAERLNDLGAASGCLHGDMEQRERDRVMAMFRNGSHRILV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V NFD+P   E Y+HRIGRTGRAG+ G A T+   +D   +   
Sbjct: 340 ATDVAARGLDIDNLELVINFDLPLSPEIYVHRIGRTGRAGKTGVAVTIAHPKDTLKLGQF 399

Query: 361 EKLIEKK 367
           E+L   K
Sbjct: 400 EELTGGK 406


>gi|21283239|ref|NP_646327.1| hypothetical protein MW1510 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486394|ref|YP_043615.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|148268042|ref|YP_001246985.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394110|ref|YP_001316785.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus JH1]
 gi|253314929|ref|ZP_04838142.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
 gi|253733192|ref|ZP_04867357.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257793634|ref|ZP_05642613.1| DEAD/DEAH helicase [Staphylococcus aureus A9781]
 gi|258411066|ref|ZP_05681346.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A9763]
 gi|258420130|ref|ZP_05683085.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A9719]
 gi|258437390|ref|ZP_05689374.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A9299]
 gi|258443596|ref|ZP_05691935.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A8115]
 gi|258446803|ref|ZP_05694957.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A6300]
 gi|258453534|ref|ZP_05701512.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A5937]
 gi|269203186|ref|YP_003282455.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282893059|ref|ZP_06301293.1| helicase [Staphylococcus aureus A8117]
 gi|282928191|ref|ZP_06335796.1| helicase [Staphylococcus aureus A10102]
 gi|295406681|ref|ZP_06816486.1| helicase [Staphylococcus aureus A8819]
 gi|296275820|ref|ZP_06858327.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207723|ref|ZP_06924158.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297245737|ref|ZP_06929602.1| helicase [Staphylococcus aureus A8796]
 gi|300911804|ref|ZP_07129247.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|21204679|dbj|BAB95375.1| MW1510 [Staphylococcus aureus subsp. aureus MW2]
 gi|49244837|emb|CAG43297.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|147741111|gb|ABQ49409.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946562|gb|ABR52498.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|253728732|gb|EES97461.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257787606|gb|EEV25946.1| DEAD/DEAH helicase [Staphylococcus aureus A9781]
 gi|257840216|gb|EEV64680.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A9763]
 gi|257843841|gb|EEV68235.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A9719]
 gi|257848595|gb|EEV72583.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A9299]
 gi|257851002|gb|EEV74945.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A8115]
 gi|257854378|gb|EEV77327.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A6300]
 gi|257864265|gb|EEV87015.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A5937]
 gi|262075476|gb|ACY11449.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282589998|gb|EFB95080.1| helicase [Staphylococcus aureus A10102]
 gi|282764377|gb|EFC04503.1| helicase [Staphylococcus aureus A8117]
 gi|285817240|gb|ADC37727.1| ATP-dependent RNA helicase YqfR [Staphylococcus aureus 04-02981]
 gi|294968428|gb|EFG44452.1| helicase [Staphylococcus aureus A8819]
 gi|296887740|gb|EFH26638.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297177388|gb|EFH36640.1| helicase [Staphylococcus aureus A8796]
 gi|298694840|gb|ADI98062.1| probable ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300886050|gb|EFK81252.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|302333234|gb|ADL23427.1| ATP-dependent RNA helicase DEAD/DEAH box family protein
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|312829946|emb|CBX34788.1| DEAD/DEAH box helicase family protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129836|gb|EFT85826.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|323443230|gb|EGB00848.1| ATP-dependent RNA helicase [Staphylococcus aureus O46]
 gi|329727198|gb|EGG63654.1| DEAD-box ATP-dependent RNA helicase CshB [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 448

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 133/450 (29%), Positives = 220/450 (48%), Gaps = 15/450 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ + IP +L+R ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNKKLER 121
           ++     ++ P+ +++ PTRELA Q+ D      +        + IGG   E   ++   
Sbjct: 66  IDS---EIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRCNA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L ++    LVIDEAD M+D+G I  +  I + +       
Sbjct: 123 QPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNANIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +LQ     +L +P+ + V++     + IE   + T      +  L       
Sbjct: 183 VFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPTKGAAKVEKTLNL---ID 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFCN + N  +L  SL + G  V  IHG +  R R + +   +    Q ++A
Sbjct: 240 ILNPYLCIIFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYVIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  IE
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 362 K--LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-----KKNYS 414
               +   VD  +G+L  +    ++    + +    N    +  +    +     KK + 
Sbjct: 360 DRGFVFNTVDIKDGELKEVKAHNQRQARMRKDDHLTNQVKNKVRSKIKNKVKPGYKKKFK 419

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLG 444
            +   +  +E ++ SK QQ+ Q+   +  G
Sbjct: 420 QEVEKMKRQERKQFSK-QQNRQKRKQNKKG 448


>gi|303390338|ref|XP_003073400.1| DEAD box RNA helicase-like protein [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303302546|gb|ADM12040.1| DEAD box RNA helicase-like protein [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 493

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 119/379 (31%), Positives = 200/379 (52%), Gaps = 5/379 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--ML 60
           F + G   ++V  +   G+  PTPIQ +  P+ L   D+ GIAQTG+GKT SF+LP  + 
Sbjct: 89  FEEAGFPSRIVEELEGKGFSGPTPIQAQGWPMALSGRDMVGIAQTGSGKTLSFILPGLVH 148

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              ++   R   P  L+L PTREL  Q+    +++   + L    + GG   + Q K L 
Sbjct: 149 AKDQQPLRRGDGPIALVLAPTRELVMQIKKVADEFCGMFGLRSTAVYGGASSQPQIKALH 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G +++I TPGR++D   +G   ++ +  LV+DEADRMLDMGF P ++ I       RQT
Sbjct: 209 EGVEIVIATPGRLIDLHEQGHAPLSRVTFLVLDEADRMLDMGFEPQLRKIIPKTNGNRQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L++SAT   E++ ++E+++ +  ++ V        +     +   +   K+       + 
Sbjct: 269 LMWSATWPREVRGLAESYMNDYIQVVVGNEELKTNSKIKQVIEVCSGREKED--KLLGVL 326

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      I+FCN K+   +L + L + G+   A+HG+  Q  R K+L +F+ G   +++
Sbjct: 327 DKFKGDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPILI 386

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIKHIDA 359
           A+++A RGLD+ DV  V NFD P   E+Y+HRIGRT R   + G + T     D  +   
Sbjct: 387 ATEVAGRGLDVNDVKLVINFDFPGTCEDYVHRIGRTARGNTKEGISHTFFTINDKGNARE 446

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + +++ +    +  DL  +
Sbjct: 447 LIRMLREANQTVPSDLEDM 465


>gi|195343855|ref|XP_002038506.1| GM10578 [Drosophila sechellia]
 gi|194133527|gb|EDW55043.1| GM10578 [Drosophila sechellia]
          Length = 724

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 132/382 (34%), Positives = 209/382 (54%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+++ L   V+  +   GY  PT IQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 286 DFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIV 345

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   +   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 346 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 405

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 406 QRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 465

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--- 236
           TL++SAT   E+++++E+FL N  +I + +   +A       V    ++SK+  L     
Sbjct: 466 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLS 525

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +  + ++    IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G  
Sbjct: 526 DIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 585

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + K 
Sbjct: 586 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 645

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
             A+  ++ +    +N  L +L
Sbjct: 646 AKALVDVLREANQEINPALENL 667


>gi|8444|emb|CAA37037.1| unnamed protein product [Drosophila melanogaster]
          Length = 575

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 132/382 (34%), Positives = 209/382 (54%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+++ L   V+  +   GY  PT IQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 138 DFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIV 197

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   +   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 198 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 257

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 258 QRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 317

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--- 236
           TL++SAT   E+++++E+FL N  +I + +   +A       V    ++SK+  L     
Sbjct: 318 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLS 377

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +  + ++    IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G  
Sbjct: 378 DIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 437

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + K 
Sbjct: 438 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 497

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
             A+  ++ +    +N  L +L
Sbjct: 498 AKALVDVLREANQEINPALENL 519


>gi|24644481|ref|NP_731031.1| Rm62, isoform D [Drosophila melanogaster]
 gi|281361218|ref|NP_001163528.1| Rm62, isoform H [Drosophila melanogaster]
 gi|23175946|gb|AAN14331.1| Rm62, isoform D [Drosophila melanogaster]
 gi|51092049|gb|AAT94438.1| RE56857p [Drosophila melanogaster]
 gi|272476832|gb|ACZ94826.1| Rm62, isoform H [Drosophila melanogaster]
          Length = 575

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 132/382 (34%), Positives = 209/382 (54%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+++ L   V+  +   GY  PT IQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 138 DFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIV 197

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   +   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 198 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 257

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 258 QRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 317

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--- 236
           TL++SAT   E+++++E+FL N  +I + +   +A       V    ++SK+  L     
Sbjct: 318 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLS 377

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +  + ++    IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G  
Sbjct: 378 DIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 437

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + K 
Sbjct: 438 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 497

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
             A+  ++ +    +N  L +L
Sbjct: 498 AKALVDVLREANQEINPALENL 519


>gi|24644485|ref|NP_731033.1| Rm62, isoform C [Drosophila melanogaster]
 gi|24644487|ref|NP_731034.1| Rm62, isoform F [Drosophila melanogaster]
 gi|45551833|ref|NP_731035.2| Rm62, isoform B [Drosophila melanogaster]
 gi|10727151|gb|AAG22212.1| Rm62, isoform F [Drosophila melanogaster]
 gi|23175947|gb|AAN14332.1| Rm62, isoform C [Drosophila melanogaster]
 gi|25012758|gb|AAN71471.1| RE68337p [Drosophila melanogaster]
 gi|45446365|gb|AAF51926.2| Rm62, isoform B [Drosophila melanogaster]
 gi|220950572|gb|ACL87829.1| Rm62-PB [synthetic construct]
          Length = 578

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 132/382 (34%), Positives = 209/382 (54%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+++ L   V+  +   GY  PT IQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 141 DFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIV 200

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   +   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 201 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 260

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 261 QRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 320

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--- 236
           TL++SAT   E+++++E+FL N  +I + +   +A       V    ++SK+  L     
Sbjct: 321 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLS 380

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +  + ++    IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G  
Sbjct: 381 DIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 440

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + K 
Sbjct: 441 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 500

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
             A+  ++ +    +N  L +L
Sbjct: 501 AKALVDVLREANQEINPALENL 522


>gi|24644483|ref|NP_731032.1| Rm62, isoform E [Drosophila melanogaster]
 gi|320542448|ref|NP_001189182.1| Rm62, isoform I [Drosophila melanogaster]
 gi|10727150|gb|AAF51927.2| Rm62, isoform E [Drosophila melanogaster]
 gi|257286223|gb|ACV53058.1| LP18603p [Drosophila melanogaster]
 gi|318068719|gb|ADV37273.1| Rm62, isoform I [Drosophila melanogaster]
          Length = 578

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 132/382 (34%), Positives = 209/382 (54%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+++ L   V+  +   GY  PT IQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 141 DFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIV 200

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   +   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 201 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 260

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 261 QRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 320

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--- 236
           TL++SAT   E+++++E+FL N  +I + +   +A       V    ++SK+  L     
Sbjct: 321 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLS 380

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +  + ++    IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G  
Sbjct: 381 DIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 440

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + K 
Sbjct: 441 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 500

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
             A+  ++ +    +N  L +L
Sbjct: 501 AKALVDVLREANQEINPALENL 522


>gi|24644479|ref|NP_524243.2| Rm62, isoform A [Drosophila melanogaster]
 gi|30923187|sp|P19109|DDX17_DROME RecName: Full=ATP-dependent RNA helicase p62
 gi|23175945|gb|AAG22213.2| Rm62, isoform A [Drosophila melanogaster]
 gi|41058179|gb|AAR99134.1| RE11923p [Drosophila melanogaster]
          Length = 719

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 132/382 (34%), Positives = 209/382 (54%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+++ L   V+  +   GY  PT IQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 282 DFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIV 341

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   +   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 342 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 401

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 402 QRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 461

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--- 236
           TL++SAT   E+++++E+FL N  +I + +   +A       V    ++SK+  L     
Sbjct: 462 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLS 521

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +  + ++    IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G  
Sbjct: 522 DIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 581

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + K 
Sbjct: 582 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 641

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
             A+  ++ +    +N  L +L
Sbjct: 642 AKALVDVLREANQEINPALENL 663


>gi|149178000|ref|ZP_01856597.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
 gi|148843193|gb|EDL57559.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
          Length = 418

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 145/394 (36%), Positives = 227/394 (57%), Gaps = 11/394 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ LGL+ K++  +  AGY  P+PIQ + IP+ +   D  G A+TGTGKTA+F LP+L 
Sbjct: 16  SFSQLGLNEKILKDLSKAGYETPSPIQSELIPIAVTGQDCIGQARTGTGKTAAFSLPVLQ 75

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    R    + LIL PTREL+ QVA    K   + +L++A+L+GG P   Q  +L++
Sbjct: 76  QLDL---RRPGMQALILAPTRELSEQVAAEIRKLCTSKSLSIAVLVGGKPVRPQENQLKK 132

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA + + TPGR++DH NRG L +  +  +V+DEADRMLD+GF P I+ I    P  RQTL
Sbjct: 133 GAQIAVGTPGRVIDHINRGNLQLGTLGFVVLDEADRMLDIGFRPDIEKILRKCPEKRQTL 192

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+   +++++  ++QNP  I+++    + + I+  ++        K          
Sbjct: 193 LLSATLPPPVERLANRYMQNPVMIDLSEDKVSVDAIDQYYITVDPDRKIKLLSRLL---F 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q+  K  I+F   K+    L     K+   V AIHG++ Q  R ++L  F+EG I+L++A
Sbjct: 250 QERPKQTIVFTRTKRGADKLDRIFSKKLKEVAAIHGDLPQPKRDRVLKKFREGKIRLLIA 309

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR--AGRHGKAFTLVAKEDIKHIDA 359
           +D+  RG+D+  + H+ NFD+P  +++Y+HRIGR GR  + + G AFT VA ++ + +  
Sbjct: 310 TDVMGRGIDVSGISHIINFDIPEFSDDYVHRIGRVGRLSSDQKGAAFTFVAPDEGEQLTN 369

Query: 360 IEKLIEKKVDWLNGD-LSSLNP--PLEKIDIAQH 390
           IE  I   V     D   +  P  P +KI+   H
Sbjct: 370 IENRINHMVKEFRVDEFEAYKPQKPRKKIEKVSH 403


>gi|134292614|ref|YP_001116350.1| ATP-dependent RNA helicase DbpA [Burkholderia vietnamiensis G4]
 gi|134135771|gb|ABO56885.1| ATP-dependent RNA helicase DbpA [Burkholderia vietnamiensis G4]
          Length = 465

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 151/422 (35%), Positives = 219/422 (51%), Gaps = 24/422 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GYV  TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L+ 
Sbjct: 9   FSALPLTPATLANLTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + +IL PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 69  LDA---RRFDVQAMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH  RG L ++ +  LV+DEADRMLDMGF   I  +  + P TRQTL
Sbjct: 126 GAHVVVGTPGRIMDHLERGNLKLDALNTLVLDEADRMLDMGFFDDIVKVARMCPATRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ F     R       +            Y     +       L +
Sbjct: 186 LFSATYPDGIAKLSQQF----LRNPKEVKLAERHDDSKIRQRFYEVTDTERLHAVGQLLN 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 242 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 361

Query: 362 KLIEKKVDW------LNGDLSSLNPPLEKIDIAQHNHARKNNPIP-------QKSTGFDR 408
           +  ++ V+W         D  +L PP+E + I      RK+   P           GFD 
Sbjct: 362 QAQKRDVEWHSLAELKPADEGTLLPPMETLQIL---GGRKDKIRPGDVLGALTGDAGFDG 418

Query: 409 RK 410
           ++
Sbjct: 419 KQ 420


>gi|261332727|emb|CBH15722.1| ATP-dependent DEAD/H RNA helicase HEL64,putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 568

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 122/427 (28%), Positives = 213/427 (49%), Gaps = 19/427 (4%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP- 58
            F  L   + P ++  +    +  PTP+Q ++ P++L   D+ G+A+TG+GKT  F++P 
Sbjct: 101 SFDHLRGIVPPYLLKKLTAQNFTAPTPVQAQSWPVLLSGRDLVGVAKTGSGKTLGFMVPA 160

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  I  +   R      +++       AQ  +   K     ++    + GG P   Q   
Sbjct: 161 LAHIAVQEPLRSGDGPMVVVLAPTRELAQQIEEETKKVIPGDVYCGCVYGGAPKGPQLGL 220

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG  +L+ TPGR++D  +  ++ ++ +  LV+DEADRMLDMGF P ++ I   +   R
Sbjct: 221 LRRGVHILVATPGRLIDFLDIKRINLHRVTYLVLDEADRMLDMGFEPQVRKICGQIRPDR 280

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT++FSAT   E+Q+++  F +   RI V +    A            +++K+     + 
Sbjct: 281 QTVMFSATWPREIQRLAAEFQKQWIRISVGSTELQANKDVTQRFILTQEFAKQDE--LRK 338

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +   +  ++FC  K+    L   L + G+   AIHG+ +QR R  IL+ F++     
Sbjct: 339 LMQEHREERVLVFCKMKRTADELERQLRRWGYDAMAIHGDKEQRQREFILARFRKDPRLC 398

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH-- 356
           +VA+D+AARGLDI  +  V N+D P + ++Y+HRIGRTGRAG  G AFTL+ K++ +   
Sbjct: 399 LVATDVAARGLDIKQLETVINYDFPMQIDDYVHRIGRTGRAGAKGDAFTLITKKEAQITP 458

Query: 357 --IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
             +  +  ++E+    +   +   N    +  + ++          +   GF R +    
Sbjct: 459 SVLKELIGILERAQQEIPDWMIEWNAQQPRYQVKRN----------RGMNGFGRHQSAPF 508

Query: 415 SQKSHIP 421
            +  H P
Sbjct: 509 LRNGHRP 515


>gi|258653503|ref|YP_003202659.1| DEAD/DEAH box helicase domain-containing protein [Nakamurella
           multipartita DSM 44233]
 gi|258556728|gb|ACV79670.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM
           44233]
          Length = 607

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 140/392 (35%), Positives = 202/392 (51%), Gaps = 16/392 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL   ++ AV D G+  PT IQ   IP +L   D+ G+AQTGTGKTA+F LP+L  
Sbjct: 29  FDELGLPGTLLRAVKDLGFATPTAIQAAAIPALLAGRDITGVAQTGTGKTAAFGLPLLAA 88

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKLER 121
           ++         + L+L PTRELA QVAD    +         + I G   F  Q   L  
Sbjct: 89  IDP----TPGVQALVLCPTRELAVQVADAISSFATALPDVSVIAIYGGTGFLPQRAALRA 144

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH  RG L ++ +  LV+DEAD ML MGF   +  I S  P +RQ  
Sbjct: 145 GAQVVVGTPGRIIDHLERGTLDLSGLRFLVLDEADEMLRMGFAEDVDRILSDAPNSRQAA 204

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++ ++   + NP  I V+  SST +++   +        +           
Sbjct: 205 LFSATMPPAIRSIAAKHMTNPVDIAVSRQSSTVDSVRQIYAVVPF---RDKVDALTRFLQ 261

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K+    +   L  +G S   ++G++ Q+ R KI+   ++G + ++VA
Sbjct: 262 VTEGDAAIVFVRTKEACDQVGTDLLARGVSAAVMNGDVPQKEREKIIERLRDGRLDVLVA 321

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V NFD P   E Y+HRIGRTGRAGR G A T     ++  + AIE
Sbjct: 322 TDVAARGLDVDRIDLVVNFDAPGEPEAYVHRIGRTGRAGRTGTALTFFTPREMGRLRAIE 381

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           +          G L  + PP    ++  H  A
Sbjct: 382 RATR-------GTLEQIVPP-SPDEVTAHKAA 405


>gi|308807146|ref|XP_003080884.1| DEAD box protein P68 (ISS) [Ostreococcus tauri]
 gi|116059345|emb|CAL55052.1| DEAD box protein P68 (ISS) [Ostreococcus tauri]
          Length = 571

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 118/372 (31%), Positives = 196/372 (52%), Gaps = 9/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +    Y KP+PIQ + IP++L   DV G A+TG+GKTA+F +PM+ 
Sbjct: 112 SFEDMELKRDILADIKFREYDKPSPIQAQAIPVILSGRDVLGCAETGSGKTAAFSIPMIQ 171

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
               +    +   P  +++ PTRELA Q+    + + ++      A+++GG     Q   
Sbjct: 172 HALNQAPLRQGDGPFAIVMAPTRELAQQIETEAKTFTRSSKGFRTAIIVGGTNMSEQRSM 231

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G  +++ TPGR++DH  +G   +  +  +V+DEADRMLDMGF P I+ +   +P   
Sbjct: 232 LRGGVQIVVATPGRLIDHLQQGNTNLARVSFVVLDEADRMLDMGFEPQIREVLMNLPKPH 291

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS------KKC 232
           QTLLFSATM  E++ ++ ++L  P +++V   S+    +                     
Sbjct: 292 QTLLFSATMPVEVEALAADYLNKPVKVKVGQTSAPTANVSQQLEKVVDAEKVDRLVTMLI 351

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           +  ++  +   +M   ++F  +K     +   L  +  S  A+HG   Q  R   L ++K
Sbjct: 352 SEQREAQKLGHSMPMTVVFVERKHRADEIAELLNAENVSAAALHGGRSQGEREAALHDYK 411

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+D+AARGLD+  V HV N D+P   E+Y+HRIGRTGRAG  G++ +     
Sbjct: 412 TGRCSVLVATDVAARGLDVKGVAHVVNLDLPRNFEDYVHRIGRTGRAGMSGRSTSFYTDR 471

Query: 353 DIKHIDAIEKLI 364
           D   +  I++ +
Sbjct: 472 DSFIVAQIKRAL 483


>gi|121700981|ref|XP_001268755.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus clavatus
           NRRL 1]
 gi|142982514|sp|A1CNV8|DRS1_ASPCL RecName: Full=ATP-dependent RNA helicase drs1
 gi|119396898|gb|EAW07329.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus clavatus
           NRRL 1]
          Length = 826

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 137/359 (38%), Positives = 195/359 (54%), Gaps = 1/359 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  LS  ++  +    +  PTPIQ KTIP+ L   D+ G A TG+GKTA+FV+P+L 
Sbjct: 307 SFQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILE 366

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q  +   K   + ++T   L+GG     Q   L++
Sbjct: 367 RLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATHTDVTFCQLVGGFSLREQENILKK 426

Query: 122 GADVLICTPGRILDHFNRGKLLMNNI-EILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH         +  EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 427 RPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 486

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTD + K+    L  P R+ V++  +T+  +   FV        K       L 
Sbjct: 487 MLFSATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLTQEFVRLRPGREGKRLGYLLYLC 546

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+      I+F  QKK    +       G     +HG++ Q  R+K + +F+EG +  ++
Sbjct: 547 SEIFTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFREGKVAFLL 606

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A  D K + A
Sbjct: 607 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAADPDRKVVKA 665


>gi|209880309|ref|XP_002141594.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209557200|gb|EEA07245.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 939

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 139/406 (34%), Positives = 217/406 (53%), Gaps = 5/406 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G S  ++ AV   GY  PTPIQ +  P +L   DV  +A+TG+GKT +FVLPML  
Sbjct: 7   FHTFGFSSPIIEAVRHIGYSLPTPIQRRCFPAILAGRDVVAMARTGSGKTIAFVLPMLQR 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L    + +   R LIL PTREL  Q      K+    ++ +  L GG   + Q + L   
Sbjct: 67  LGCKHSTIVGIRGLILSPTRELVLQTYRVVRKFAIKTDIRICTLTGGSSLDRQFENLSGN 126

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR+  H    KL ++ I ++V+DEADR+ + G +P I +I  ++P +RQ +L
Sbjct: 127 PDIVIATPGRLCHHIVEAKLSLSAICMIVLDEADRLFETGLMPQIDDIMKIIPASRQCIL 186

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SATM   L   S   L  P+ I +++    ++T+         +  K   LL  L  + 
Sbjct: 187 VSATMPTGLVSFSRAKLVEPEFIRLDSDHLISDTL-KLIFIFTREDDKLATLLYLLRVTI 245

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  ++FC  K +V  L   L +   ++ +I+GN+DQ +R   L++F+    ++M+ +
Sbjct: 246 PHNERVMVFCATKHHVEYLAKILTECNINIGSIYGNMDQDARNAQLNSFRRNKTRVMIVT 305

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIP + +V NFD P  A+ ++HR GRTGRAG+ GKAF+LV   D+ +   +  
Sbjct: 306 DIAARGLDIPLLENVINFDYPLSAKLFVHRTGRTGRAGKMGKAFSLVTARDLPYTVDLML 365

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
            +  +V  L        P ++  DI+  N   K+N I  +S   + 
Sbjct: 366 FLGLRVSTLTNKTKD--PNIQATDIS--NIGDKDNNITLESEKVEE 407


>gi|302835956|ref|XP_002949539.1| hypothetical protein VOLCADRAFT_42311 [Volvox carteri f.
           nagariensis]
 gi|300265366|gb|EFJ49558.1| hypothetical protein VOLCADRAFT_42311 [Volvox carteri f.
           nagariensis]
          Length = 423

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 200/388 (51%), Gaps = 7/388 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGLS  +       G   PT +Q   IP +LQ  DV G+AQTG+GKTA+F LP+L 
Sbjct: 39  DFKSLGLSEWLCGVCKSLGMNTPTEVQRGCIPAILQGRDVIGLAQTGSGKTAAFALPILQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L K    V     L+L PTRELAAQ+ + F   G    L   ++IGG+  + Q ++L R
Sbjct: 99  VLAKDPYGVF---ALVLTPTRELAAQICEQFRALGAGMRLKELVIIGGVDMQHQARELAR 155

Query: 122 GADVLICTPGRILDHFNRG---KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              V++ TPGR+    +        ++    LV+DEADR+LD  F   ++ +   +   R
Sbjct: 156 RPHVVVATPGRLRGLLDADGGLSAGLSRTRFLVLDEADRVLDPTFEDDLRYVRFCLRQDR 215

Query: 179 QTLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTLLFSATMT   +     +              +     E                L  
Sbjct: 216 QTLLFSATMTRSLIALQKASLQDAHVFQAYEGLRTADRLREEYLFLPAKVKEVYLHYLLT 275

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++     +++ IIFC+  +    L   LE+ G    A+H    Q++R+  L+ FK   + 
Sbjct: 276 VVVPARKVRSAIIFCSTCRGCHLLSVLLEELGLPAAALHSGKSQKARLSALARFKSEQVP 335

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L++A+D+A+RGLDIP V  V N+D+P  A +Y+HR+GRT RAGR G + +LV + D++ +
Sbjct: 336 LLLATDVASRGLDIPTVDLVVNYDLPVLARDYVHRVGRTARAGRSGWSLSLVTQYDVQLV 395

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
            AIE+LI  K+D    D   +   + K+
Sbjct: 396 HAIEELIGHKLDEHKLDEDEVLKGITKV 423


>gi|148228466|ref|NP_001087845.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Xenopus laevis]
 gi|51950262|gb|AAH82368.1| MGC81606 protein [Xenopus laevis]
          Length = 428

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 92/375 (24%), Positives = 164/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 47  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQ 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY  +  + V      I  + +  K    
Sbjct: 107 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLAIKKDEEVLKKSCP 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L +    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 167 HIVVGTPGRMLALARNKTLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  I V+  +         +        K   L        
Sbjct: 227 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL--LDL 284

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 285 LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMSQEERLSRYQQFKDFQRRILVAT 344

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V   FN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 345 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDAKILNEVQ 404

Query: 362 KLIEKKVDWLNGDLS 376
              E  +  L  ++ 
Sbjct: 405 DRFEVNISELPDEID 419


>gi|45360797|ref|NP_989072.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Xenopus (Silurana)
           tropicalis]
 gi|38174030|gb|AAH61280.1| HLA-B associated transcript 1 [Xenopus (Silurana) tropicalis]
          Length = 428

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 92/375 (24%), Positives = 164/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 47  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQ 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY  +  + V      I  + +  K    
Sbjct: 107 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLAIKKDEEVLKKSCP 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L +    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 167 HIVVGTPGRMLALARNKTLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  I V+  +         +        K   L        
Sbjct: 227 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL--LDL 284

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 285 LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMSQEERLSRYQQFKDFQRRILVAT 344

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V   FN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 345 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDAKILNEVQ 404

Query: 362 KLIEKKVDWLNGDLS 376
              E  +  L  ++ 
Sbjct: 405 DRFEVNISELPDEID 419


>gi|82569452|gb|ABB83368.1| VASA-like protein [Pleurodeles waltl]
          Length = 463

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 122/390 (31%), Positives = 204/390 (52%), Gaps = 14/390 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGYVK TP+Q  +IP+VL + D+   AQTG+GKTA+F+LP+L
Sbjct: 30  LTFEEANLPETLNRNISKAGYVKLTPVQKYSIPIVLAKRDLMACAQTGSGKTAAFLLPIL 89

Query: 61  TILEKGRARVR-----MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             + +            P  +I+ PTREL  Q+  +  K+     +   ++ GG      
Sbjct: 90  AHMMRDGVAPHSLDLQEPEAIIVAPTRELINQIFLDARKFAYGTCIKPVVVYGGTQTFHS 149

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----IT 171
            +++ +G ++L  TPGR++D   R K+ +  +  LV+DEADRMLDMGF P ++       
Sbjct: 150 LRQIYQGCNILCATPGRLIDIIKREKIGLTKLRYLVLDEADRMLDMGFGPDMKVLVNSPG 209

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTL+FSAT  + +Q +++ FL++     V      A +     +    Q+ KK
Sbjct: 210 MPSKEDRQTLMFSATFPERIQSLAKEFLKSDYLFVVVGQVGGACSDVEQIIIPVGQHGKK 269

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L++  +     ++  ++F   KK    L   L ++     +IHG+  Q+ R + L++F
Sbjct: 270 DKLVE--ILQGLGIERTMVFVKTKKRADYLTTLLCQENVLATSIHGDRLQKEREEALADF 327

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G   ++VA+++AARGLDI +V HV  +D+ +  E Y+HRIGRTGR G  GKA T    
Sbjct: 328 RFGKCNVLVATNVAARGLDIENVQHVIIYDLSDNIEEYVHRIGRTGRCGNVGKAITFFDT 387

Query: 352 EDIKH---IDAIEKLIEKKVDWLNGDLSSL 378
           +D +      ++ K++      +   L  +
Sbjct: 388 DDNEDRTVARSLVKVLSDAQQEVPAWLEEV 417


>gi|67624257|ref|XP_668411.1| RNA-dependent helicase [Cryptosporidium hominis TU502]
 gi|54659606|gb|EAL38175.1| similar to RNA-dependent helicase p68 (DEAD-box protein p68)
           (DEAD-box protein 5) [Cryptosporidium hominis]
          Length = 406

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 125/395 (31%), Positives = 201/395 (50%), Gaps = 6/395 (1%)

Query: 23  KPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR--ARVRMPRTLILEP 80
           +PT IQ++  P+ L  HD+ GIA+TG+GKT  F+LP +  +           P  L+L P
Sbjct: 10  EPTAIQVQGWPVALSGHDMIGIAETGSGKTLGFLLPAMIHIRAQPLLRYGDGPICLVLAP 69

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TREL  Q+ +   ++G  + L    + GG+P   Q   +  G ++ I  PGR++D    G
Sbjct: 70  TRELVEQIREQANQFGSIFKLRNTAIYGGVPKRPQQASIRNGVEICIACPGRLIDLLEEG 129

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200
              ++ +  LV+DEADRMLDMGF P I+ + S +   RQTLL+SAT   E+QK++ +  +
Sbjct: 130 YTNLSRVTYLVLDEADRMLDMGFEPQIRKLVSQIRPDRQTLLWSATWPKEVQKLARDLCK 189

Query: 201 NPKRIEVNTPSSTAETIEHCFVATYAQYS---KKCALLQQLLQSQDTMKNGIIFCNQKKN 257
                         +   +             K    +       ++    +IFC  K+ 
Sbjct: 190 EIPIHINVGSVDALKASHNIKQYVNVVEESEKKARLKMFLGQVMVESAPKVLIFCETKRG 249

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
              L   L   G+    IHG+  Q  R  +L+ F+ G   +M+A+D+AARGLDI D+  V
Sbjct: 250 ADILTKELRLDGWPALCIHGDKKQEERTWVLNEFRTGASPIMIATDVAARGLDIKDINFV 309

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
            NFD PN+ E+YIHRIGRTGRAG  G + +    +  +    + K++++    +  +L  
Sbjct: 310 INFDFPNQIEDYIHRIGRTGRAGATGVSLSFFTPDKYRMASDLIKVLKEAKQRIPPELFK 369

Query: 378 LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           L+P  +++   ++   R+NNP      G +R  ++
Sbjct: 370 LSPQNKRMH-PRNTGFRRNNPNSLPLGGSNRAYRD 403


>gi|332021296|gb|EGI61675.1| Putative ATP-dependent RNA helicase DDX27 [Acromyrmex echinatior]
          Length = 740

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 142/451 (31%), Positives = 232/451 (51%), Gaps = 20/451 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++ A+    +V+PTPIQ  TIP  L   D+CG A TGTGKTA+++LP+L 
Sbjct: 152 TFYQMNLSRPLLKAITTMNFVQPTPIQAATIPAALMGRDICGCAATGTGKTAAYMLPILE 211

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L            + +L PTREL  QV    ++  +   + + L +GG+  + Q   L 
Sbjct: 212 RLLYRPLDGPSISRVLVLVPTRELGVQVYQVAKQLAQFTTIEIGLSVGGLDVKIQEGVLR 271

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  D++I TPGR++DH  N     +++IE+L++DEADRMLD  F   ++ I      TRQ
Sbjct: 272 KNPDIVIATPGRLIDHLRNAPTFSLDSIEVLILDEADRMLDEYFAEQMKYIVKQCSRTRQ 331

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMT+E++ ++   L  P +I V++    A  +   F+    +       +   L
Sbjct: 332 TILFSATMTEEVEDLAAVSLDKPIKIFVDSNQDVAFNLRQEFIRIRKEREGDREAILAAL 391

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + ++F   KK    L   L   G  V  +HGN+ Q  R++ L  FK+  I ++
Sbjct: 392 VCRTFHDHTMVFLQTKKQAHRLHILLGLLGVKVGELHGNLTQPQRLENLRKFKDEEIDIL 451

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  V  V NF +P   ++YIHR+GRT RAGR G + +L  +++   +  
Sbjct: 452 LATDVAARGLDISGVKTVINFVMPATLQHYIHRVGRTARAGRGGVSVSLAGEQERTLVKK 511

Query: 360 IEKLIEKK----------VDWLNGDLSSLNPPLEKI---DIAQHNHARKNNPIPQ----- 401
           I K  +            ++  N  L SL   ++KI   + ++   A+  N   +     
Sbjct: 512 IIKQAKNPVKNRIIAPDIIEKYNKKLESLESDVQKILQEEKSEKELAKVENEANRIEKIL 571

Query: 402 KSTGFDRRKKNYSSQKSHIPLKESEKISKLQ 432
           K      ++  + S+K     K++ +++K Q
Sbjct: 572 KVEDGKEQRSWFQSKKERKKEKDNLRLTKKQ 602


>gi|322490767|emb|CBZ26031.1| putative DEAD box RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 527

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 129/457 (28%), Positives = 232/457 (50%), Gaps = 6/457 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL  ++  A  +AG+  PT IQ   I +  +  D+ G+AQTG+GKT ++ LP++ 
Sbjct: 54  TFQDLGLCEELCSACAEAGWQHPTRIQASAITVFAEGRDLIGVAQTGSGKTGAYALPLVN 113

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            L   + +      L++ PTRELA QV   F   G++  L VA L+GG     Q  +  +
Sbjct: 114 WLLT-QRKTPYLSVLVMVPTRELAQQVTAQFVLLGRSVGLRVATLVGGADMVEQACELSK 172

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++           N     +  +  LV+DEAD+MLDM +   I  I   +P  R+T
Sbjct: 173 RPHVIVGTPGRVKDHLSNTKGFKLVKLHALVLDEADKMLDMDYEKEIDAILEQLPQDRRT 232

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT++ ++ ++ +  L +P  ++V+  ++T +T++  ++        +      L  
Sbjct: 233 MLFSATLSTKIDRLQKASLLDPVLLQVHRKNTTVDTLKQYYIFAPFA---QMLSYLHLFL 289

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++T  + +IFC     V  +  +L   G     + G +DQ +R   L+ FKEG +++++
Sbjct: 290 TKETGNHILIFCRSAALVHKITLALRILGHRALPLMGRMDQSNRNIALTKFKEGKVRMLI 349

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A RGLDIP    V NF +P+  E+YIHR+GRT RAG  GKA  L+++ DI  +  I
Sbjct: 350 CTDVAQRGLDIPHTDVVVNFSLPDHVEDYIHRVGRTARAGAEGKAVNLISQYDIVLLQKI 409

Query: 361 EKLIEKK-VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           E+    K V++ +   S +   L++++ A+    R+     ++ +     ++  +++K  
Sbjct: 410 EQQTGVKCVEYPSLAESEVQLVLQRVEDAEQEAIREIREDAEERSLEKESRQLTTARKGK 469

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPK 456
               +++      +    + A     R +   F + K
Sbjct: 470 RDRGDADMGYDDAKHGTSDFATLRMRREHESIFEMTK 506


>gi|167770986|ref|ZP_02443039.1| hypothetical protein ANACOL_02340 [Anaerotruncus colihominis DSM
           17241]
 gi|167667026|gb|EDS11156.1| hypothetical protein ANACOL_02340 [Anaerotruncus colihominis DSM
           17241]
          Length = 397

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 118/376 (31%), Positives = 205/376 (54%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++DL LS + + AV   G+ + T IQ K IP++L+  ++   A TGTGKT +F +P++ 
Sbjct: 17  QYSDLLLSEETLKAVERMGFTELTEIQEKAIPVMLEGREIIAKAPTGTGKTCAFGVPIME 76

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            ++     V+     +L PTREL  Q+ D   +         VA + GG   + Q   L+
Sbjct: 77  KIDPSALAVQAV---VLCPTRELCTQIVDELRELAHFRPQVRVAAVYGGQQIDRQINALK 133

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +++ TPGR+LDH +R  + ++ + I V+DEAD MLDMGF   +  I   +P  RQ 
Sbjct: 134 RGAQIVVATPGRMLDHMHRRTINLSKVSIAVLDEADEMLDMGFYKDVCKILDRLPKERQM 193

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ E+  +   + ++   +   T     E+             ++       + 
Sbjct: 194 VMFSATISREVMDIGWLYQRDTVEL---TVEPVKESQPKIHQYMLESVGRQKLADLCYIL 250

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     +IFCN K +  +L + L ++GF+   ++G++ Q  R +I++ F+ G I ++V
Sbjct: 251 EANDFHKVMIFCNTKYSTASLSNLLRERGFNADCLNGDMRQSERNQIMARFRSGEISVLV 310

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV  VFN+++P   E Y+HRIGRTGRA + G ++    ++++  +  I
Sbjct: 311 ATDVAARGIDVLDVDAVFNYEIPLENEYYLHRIGRTGRAKKEGVSYIFYGRDELPRLRPI 370

Query: 361 EKLIEKKVDWLNGDLS 376
            +    +V  L  + S
Sbjct: 371 IRYTRSRVMELEFNES 386


>gi|126208042|ref|YP_001053267.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           L20]
 gi|126096834|gb|ABN73662.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 406

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 122/398 (30%), Positives = 201/398 (50%), Gaps = 6/398 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   V+ A+   G+   TPIQ KT+P+ L   D+ G AQT TGKT +F++ +   
Sbjct: 10  FIDFPIHENVLAALDSKGFEFCTPIQAKTLPITLAGQDIAGQAQTRTGKTLAFLIAVFHY 69

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                       PR +IL PTRELA Q+  + E   K+ +L +AL  GG  ++ Q + +E
Sbjct: 70  LLTNDSVTNKNQPRAIILAPTRELAVQIGSDAELLVKHSDLKLALAYGGDGYDKQVQAIE 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ T GR++D+  +G + ++ ++++V+DEADRM D+GFI  I+ +    P   Q 
Sbjct: 130 QGVDILVGTTGRVIDYVKQGIINLDKVQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEQR 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L    + T   +     +        +        T        +   ++    L   L 
Sbjct: 190 LTMLFSATLSARVRELAYEDMNNAQYI-EIEPLQRTGHRIKEELFYPSNEDKMALLLTLL 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     +IF N K     + + L   G  V  + G+I Q+ R+ +L +F +G + ++V
Sbjct: 249 EEEWPDRCMIFANTKHKCEEIWNYLVADGHRVGLLTGDIAQKKRLALLDSFTKGQLDILV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL IP+V HVFN+D+P+  E+Y+HRIGRTGRAG  G + +   +    ++ AI
Sbjct: 309 ATDVAARGLHIPEVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISFACERYAVNLPAI 368

Query: 361 EKLIEKKVDWLNGD---LSSLNPPLEKIDIAQHNHARK 395
           E  I   +     D   L +L  P        +   ++
Sbjct: 369 EAYIGHHIPVSQYDSGALLTLPKPTRSRTTRSYQTKKR 406


>gi|261211120|ref|ZP_05925409.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC341]
 gi|260839621|gb|EEX66232.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC341]
          Length = 460

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 139/402 (34%), Positives = 224/402 (55%), Gaps = 9/402 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L L P+++  +   G+   TPIQ +++P +L   DV G  +TG+GKTA+F L +L+
Sbjct: 5   SFAALNLKPELLANLETMGFASMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+    L+L PTRELA QVA +    G+  +    L +  G+P   Q   LE
Sbjct: 65  NLNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRTIHNIKVLTLCGGMPMGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH ++ ++ ++ +  LV+DEADRML+MGF   ++ I +  P  RQT
Sbjct: 122 HGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++++++  +N   I+V     T +T            S       + L 
Sbjct: 182 LLFSATYPASIEQIAQSVTRNAMMIKVEA---THDTSSIRQYFYKVDGSAARDEALETLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + ++FCN K+ V N+  +L + GFSV  +HG+++QR R + L  F   +I ++V
Sbjct: 239 LHHQPTSSVVFCNTKREVKNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFN+D+    E ++HRIGRTGRAG  G AF+  +  +   +  I
Sbjct: 299 ATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQI 358

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           ++ ++ ++    L    +   P    +   Q +  +K+   P
Sbjct: 359 DEYMDIEIVPSSLPQPAAGARPYAANMVTIQIDGGKKDKVRP 400


>gi|60594464|pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
          Length = 391

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 164/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 10  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY  N  + V      I  + +  K    
Sbjct: 70  LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP 129

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L +    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 130 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 189

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  I V+  +         +        K   L        
Sbjct: 190 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL--LDV 247

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 248 LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 307

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V   FN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 308 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 367

Query: 362 KLIEKKVDWLNGDLS 376
              E  +  L  ++ 
Sbjct: 368 DRFEVNISELPDEID 382


>gi|325115741|emb|CBZ51296.1| hypothetical protein NCLIV_043620 [Neospora caninum Liverpool]
          Length = 673

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 128/390 (32%), Positives = 197/390 (50%), Gaps = 16/390 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     ++  + + G   PT IQ++ IP +LQ  D+ GIA TG+GKT  F LPM+ 
Sbjct: 225 NFKDMRFPQPILKGLQERGISFPTQIQMQGIPAILQGRDIIGIAFTGSGKTLVFSLPMIM 284

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R        P  L++ P+RELA+Q  D    + K              +IGG 
Sbjct: 285 GALESETRAAYLPGEGPFGLVVCPSRELASQTNDVCSFFCKKLEEGGYPALRCLCVIGGC 344

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q +++ +G   ++ TPGR+ D  N+ +L +   E L  DEADRM+DMGF   ++N+
Sbjct: 345 SVVEQAREVRQGVHCIVATPGRLTDMLNKRRLSLQQCEYLCFDEADRMVDMGFEEEVRNV 404

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q+    F ++     +      A       V       +
Sbjct: 405 LDSFGHQRQTLLFSATMPRKIQE----FAKSALIDPLVVNVGRAGAANLDVVQEVEYVKQ 460

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L   L   Q T    +IFC  KK+V ++   L  +G    A+HG + Q  R   +  
Sbjct: 461 ENKLPYLLHCLQKTAPPVLIFCENKKDVDDIQEYLLLKGVDAAAVHGGLAQEERSDAVRA 520

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++V +D+A++GLD P + HV NFD+P   ENY+HRIGRTGR GR G A T V 
Sbjct: 521 FREGRKDVLVGTDVASKGLDFPAIQHVINFDMPKEIENYVHRIGRTGRCGRTGVATTFVN 580

Query: 351 K-EDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           K ++   +  ++ L+ +    +   L +L+
Sbjct: 581 KNQEETVLLDLKALLIEAGQRIPPFLEALD 610


>gi|163843319|ref|YP_001627723.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis
           ATCC 23445]
 gi|163674042|gb|ABY38153.1| DEAD/DEAH box helicase domain protein [Brucella suis ATCC 23445]
          Length = 535

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 151/421 (35%), Positives = 235/421 (55%), Gaps = 8/421 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ++ IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQMQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEI---TQVVHPVPTKEKRRLLSAML 325

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 326 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 445

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E++   K+   +  +     P+ K    Q    R      +K+     R+    + + H
Sbjct: 446 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--GQRTEQAESRKAPAHKHRRPAQKAGEQH 503

Query: 420 I 420
            
Sbjct: 504 R 504


>gi|509403|emb|CAA84355.1| BAT1 [Sus scrofa]
          Length = 427

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 163/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY  N  + V      I  + +  K    
Sbjct: 106 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L +    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 166 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  I V+  +         +        K   L        
Sbjct: 226 FSATLSKEVRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+    ++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRGILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V   FN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  +  L  ++ 
Sbjct: 404 DRFEVNISELPDEID 418


>gi|317125686|ref|YP_004099798.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043]
 gi|315589774|gb|ADU49071.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM
           43043]
          Length = 562

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 141/420 (33%), Positives = 228/420 (54%), Gaps = 20/420 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FAD  + P+++ A+ + G + P PIQ  T+P+ L  HD+ G A+TGTGKT  F +PML
Sbjct: 15  ITFADFPVHPEIISALAEWGIIHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGVPML 74

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             +            R   P+ L + PTRELA QV+ + E+ G++  + V  + GG  +E
Sbjct: 75  NSVVAPGDAGFDALPRPGKPQALAVAPTRELAVQVSGDLERAGRHRGIRVLTVYGGRAYE 134

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L RG +V++ TPGR++D   +G L ++  +++V+DEAD MLD+GF+P ++ + SL
Sbjct: 135 PQVDALRRGVEVVVGTPGRLIDLAKQGHLDLSQAKVVVLDEADEMLDLGFLPDVETLMSL 194

Query: 174 VPFTRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            P +RQT+LFSATM   +  ++  ++ Q      +   +  A T++      Y  ++   
Sbjct: 195 TPASRQTMLFSATMPGAIVTLARRYMTQPTHIRAMGDENENAHTVKAVEQFVYRAHALDK 254

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             +   +         IIF   K+    +   L ++GF+  AIHG++ Q +R + L  F+
Sbjct: 255 VEMLSRMLQAKDRGLTIIFSRTKRTAAKVADELGERGFAAAAIHGDLGQGAREQALRAFR 314

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G + ++VA+D+AARG+D+ +V HV NF  P   + Y+HRIGRT RAG  G A T V  +
Sbjct: 315 NGKVDVLVATDVAARGIDVDNVTHVINFQCPEDEKTYLHRIGRTARAGNTGVAVTFVDWD 374

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           D+        LI K +D        +  P E    ++H +   +  IP ++ GF RR + 
Sbjct: 375 DLHRWA----LINKTLDL------GIPEPQETYSNSEHLYG--DLGIPAEAKGFLRRSEQ 422


>gi|228471344|ref|ZP_04056145.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           uenonis 60-3]
 gi|228306845|gb|EEK15958.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           uenonis 60-3]
          Length = 553

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 117/374 (31%), Positives = 204/374 (54%), Gaps = 7/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           M F  L LSP+++ A  D G+ +P P+Q + IP +     D+  +++TG+GKTA++ LP+
Sbjct: 1   MTFDTLDLSPELLRATTDLGFSEPMPVQQEVIPYLSTHRGDLIALSKTGSGKTAAYGLPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKK 118
           L  + +   +   P  LIL PTRELA QV  +     K  ++   L + G    E Q ++
Sbjct: 61  LERIIQA--KGSAPCGLILTPTRELAIQVQSDLVALAKYTSVRQILALYGGASIEEQIRQ 118

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G  +++ TPGR+ D   R  + +  + ++V+DEAD MLDMGF   +Q I   VP   
Sbjct: 119 LAKGYHIIVATPGRLCDLIRRKAVKLRKVSVVVLDEADVMLDMGFQRDLQEILQAVPQQV 178

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +  LFSATM+ E++++++N++ +   +++   +   +          A  ++      + 
Sbjct: 179 EHWLFSATMSREVREIADNYISDAHEVQIGALN---KANADIKHLYVAVPARHKYAALKR 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +        GIIFC  +     +   L + G++  A+HG++ Q  R  +++ F+   +QL
Sbjct: 236 VVDYYPNIYGIIFCRTRAETKEIAEWLIRDGYNADALHGDLSQAQRDMVMNRFRIRNLQL 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ DV HV ++ +P   ++Y HR GRT RAG+ G +  +    D K I 
Sbjct: 296 LVATDVAARGLDVDDVTHVLHYGLPADPDSYTHRSGRTARAGKTGLSIAICHLRDSKQIR 355

Query: 359 AIEKLIEKKVDWLN 372
            IE+    +++ + 
Sbjct: 356 IIEQHAGIRIESMP 369


>gi|195474630|ref|XP_002089594.1| GE19181 [Drosophila yakuba]
 gi|194175695|gb|EDW89306.1| GE19181 [Drosophila yakuba]
          Length = 782

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 238/455 (52%), Gaps = 14/455 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP + 
Sbjct: 158 SFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLE 217

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L +      + R L+L PTREL AQV    ++  +  ++ V L IGG+  +AQ   L 
Sbjct: 218 RLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLR 277

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  D++I TPGR++DH         ++IE+L++DEADRMLD  F   ++ I +    TRQ
Sbjct: 278 QNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQ 337

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM+++++ ++   L  P ++ VN     A  +   F+            +   L
Sbjct: 338 TMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASL 397

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + ++F   KK    L   L   G     +HGN+ Q+ R++ L  FKE  I ++
Sbjct: 398 ICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVL 457

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  
Sbjct: 458 IATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKD 517

Query: 360 IEKLIEKK----------VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           I K  E            ++     L+SL P ++ I + +    R+     Q+ +  +R+
Sbjct: 518 IIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNI-LDEEQAERQLAKTEQQLSKTERK 576

Query: 410 KKNYSSQKS-HIPLKESEKISKLQQDIQENDADSL 443
               ++++      K+  +  K +  +   D D +
Sbjct: 577 LLGQTNERRGWFQTKQQREAEKDRLALTTGDEDKV 611


>gi|170090862|ref|XP_001876653.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648146|gb|EDR12389.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 422

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 128/425 (30%), Positives = 203/425 (47%), Gaps = 23/425 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LG+S  +  A+       PT +Q   IP +L   D  G A+TG+GKT +F LP+L 
Sbjct: 1   SFASLGISDSLQSALTSMSIKTPTEVQAACIPPLLAGTDCIGNAKTGSGKTIAFALPILQ 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L    A       L+L PTRELA Q+++ F   G + NL  A+++GG+   AQ  +L  
Sbjct: 61  RL---LADPYGIYALVLTPTRELAFQISEQFVVLGASLNLRTAVIVGGMDMMAQALELGN 117

Query: 122 GADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              ++I TPGR++DH        +   +  LV+DEADR+L   F P + ++ +++P  RQ
Sbjct: 118 RPHIVIATPGRLVDHLRSSSGEWDLSRVRFLVLDEADRLLTRTFSPELSHLFNVLPQDRQ 177

Query: 180 TLLFSATMTDEL-------------QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
           T LF+AT+T  +             +       +   R      +     I         
Sbjct: 178 TCLFTATLTPSIESLADATARPGKQKPFVHRMNERQVRRIETVSTLKQHYILVPSHVRET 237

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
                           +     IIFC + +    L   L+       A+H  + QR R+ 
Sbjct: 238 YLYYLLRNPPDDDDELEQPPPTIIFCARPRTAAYLTLVLKSLSIRSTALHSRLTQRERLS 297

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            LS F+   + ++V++D+ +RGLDI DV  V N+D+P  AE Y HR+GRT RAGR G A 
Sbjct: 298 SLSLFRASVVPVLVSTDVGSRGLDIEDVAMVINWDMPEEAEEYTHRVGRTARAGRGGVAI 357

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
           + V + D   +  IEK I+ K++ +   + S +  LEK++    + A++   +      F
Sbjct: 358 SFVTERDEDRVVKIEKRIKTKLEEM---ILSEDKVLEKLN--AVSTAKRLAKMSLHDDKF 412

Query: 407 DRRKK 411
            +R++
Sbjct: 413 GQREE 417


>gi|324504040|gb|ADY41744.1| ATP-dependent RNA helicase DDX42 [Ascaris suum]
          Length = 808

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 130/459 (28%), Positives = 208/459 (45%), Gaps = 13/459 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA  G    ++  +  + Y  PT IQ +++P  L   DV GIA+TG+GKT +++ P + 
Sbjct: 274 SFAHFGFDEALMNTIRKSEYEHPTAIQAQSVPAALSGRDVLGIAKTGSGKTVAYLWPAIV 333

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  LI+ PTRELA QV    +++ K YN+ V    GG     Q   L
Sbjct: 334 HIMDQPQLKEGDGPIALIVVPTRELAIQVYQEAKRFCKVYNIAVVCAYGGGSKWEQQNAL 393

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++ TPGRI+D           +  LV DEADRM DMGF   +++I+  +   RQ
Sbjct: 394 KEGAELVVATPGRIIDLVKIEATNFTRVTFLVFDEADRMFDMGFEAQVKSISDHIRPDRQ 453

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT   ++++++ + L +P RI         E +        +  +K   LLQ+L+
Sbjct: 454 CLMFSATFKAKVERLARDALVDPVRIVQGEVGEANEDVIQNVEVLPSVDAKWRWLLQRLV 513

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q     K  I     KK          +       +      ++      +       LM
Sbjct: 514 QFLAQGKVLIFV--TKKQNAEEVAQRLQTNDFALVLLHGDMLQAERNEKLHAFRKDTALM 571

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP++  V NFD+    + ++HRIGRTGRAG  G A+TL+   D +    
Sbjct: 572 VATDVAARGLDIPEIRTVINFDLARDIDTHVHRIGRTGRAGEKGYAYTLLTDADKEMAGH 631

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           + + +E     +   L  L         ++     K  P   K  G   + +   +  + 
Sbjct: 632 LVRNLESVNQTVPDALLQLALKSAWFRSSRGEQGNKQGP---KRLGLGYKPRTRPTAGAG 688

Query: 420 IPLKESEKI------SKLQQDIQENDADSLGFRGNMPAF 452
           +  KE+ K       S+ +QD  +    + G    + A 
Sbjct: 689 VASKETAKALACEGRSEKKQDPLDLAKAADGSTNRLQAM 727


>gi|195494738|ref|XP_002094967.1| GE22119 [Drosophila yakuba]
 gi|194181068|gb|EDW94679.1| GE22119 [Drosophila yakuba]
          Length = 594

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 125/470 (26%), Positives = 216/470 (45%), Gaps = 20/470 (4%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
            D  + P++   +L   + +PTPIQ++ +P++LQR  +   A TG+GKT +F+ P+  I 
Sbjct: 123 KDFKMLPRLQQNLLSRNFDRPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPI--IN 180

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNKKLE 120
                +    R+L+L PTRELA Q+     +  +   L+   +              K  
Sbjct: 181 GLKVHKTSGLRSLVLAPTRELAQQIYRECAELTRQTGLSTHFISKVSEAKQKHGAECKQR 240

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----ITSLVPF 176
               V      R L       L ++++E  V+DEADR+++ G   + +       +    
Sbjct: 241 YDILVSTPNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAACSHP 300

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T+    FSAT T  + K +   L+N  RI +   +S  ET++   +   ++  K  A+  
Sbjct: 301 TKCVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGKLVAMRD 360

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            + Q        ++F   K+    L   L   G +V  IH    Q  R   +  F+EG+I
Sbjct: 361 LVRQGLQPP--VLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVRAFREGSI 418

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++ ++L  RG+D   V  V N+D P    +YIHRIGRTGRAGR G+A T   +ED  +
Sbjct: 419 WVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQEDTSN 478

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           + +I  +I+       G +      ++K+  ++    R   P+ ++      R +  S++
Sbjct: 479 LRSIALIIKNS----GGSVPEYMLQMKKVRKSE-AKMRAKKPLDREDISTKIRPETKSNE 533

Query: 417 K-SHIPLKESEKISKLQQDIQENDADSLGFR---GNMPAFMLPKNRGKLN 462
           K     LK+ E+  KL ++   N+ DS   +    N+ A + P  + K N
Sbjct: 534 KHKSAKLKKVERTEKLFKNRNGNEKDSKSRQKKLSNIKADLKPAEKKKGN 583


>gi|223590217|sp|A5DID7|HAS1_PICGU RecName: Full=ATP-dependent RNA helicase HAS1
 gi|190346774|gb|EDK38940.2| hypothetical protein PGUG_03038 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 569

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 114/364 (31%), Positives = 183/364 (50%), Gaps = 4/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGLS   + A+ D G+ K T +Q KTIP +L   DV G A+TG+GKT +F++P + 
Sbjct: 106 KFEDLGLSEPTMRAIKDMGFEKMTKVQEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 165

Query: 62  ILEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   + + R    +I+  PTRELA Q+         +++ T+ ++IGG     +  KL 
Sbjct: 166 MLYSLKFKPRNGTGVIVVSPTRELALQIFGVARDLMAHHSQTLGIVIGGANRRQEADKLM 225

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-VPFTR 178
           +G ++LI TPGR +    N    +  N++ LVIDEADR+L++GF   ++ I  +     R
Sbjct: 226 KGVNLLIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMKQIIKVLPSDER 285

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q++LFSAT T +++ ++   L+         P +   T +          S    LL   
Sbjct: 286 QSMLFSATQTTKVEDLARISLRAGPLYINVVPETEVSTADGLEQGYVTCDSDMRFLLLFS 345

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +    V      L      V  +HG   Q+ R      F      +
Sbjct: 346 FLRRNIKKKIIVFLSSCNCVKYFGELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGI 405

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R  G  GK+   +   ++  +
Sbjct: 406 LICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTGGKGKSLMFLTPSELGFL 465

Query: 358 DAIE 361
             ++
Sbjct: 466 RYLK 469


>gi|146418687|ref|XP_001485309.1| hypothetical protein PGUG_03038 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 569

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 114/364 (31%), Positives = 183/364 (50%), Gaps = 4/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGLS   + A+ D G+ K T +Q KTIP +L   DV G A+TG+GKT +F++P + 
Sbjct: 106 KFEDLGLSEPTMRAIKDMGFEKMTKVQEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 165

Query: 62  ILEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   + + R    +I+  PTRELA Q+         +++ T+ ++IGG     +  KL 
Sbjct: 166 MLYSLKFKPRNGTGVIVVSPTRELALQIFGVARDLMAHHSQTLGIVIGGANRRQEADKLM 225

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-VPFTR 178
           +G ++LI TPGR +    N    +  N++ LVIDEADR+L++GF   ++ I  +     R
Sbjct: 226 KGVNLLIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMKQIIKVLPSDER 285

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q++LFSAT T +++ ++   L+         P +   T +          S    LL   
Sbjct: 286 QSMLFSATQTTKVEDLARISLRAGPLYINVVPETEVSTADGLEQGYVTCDSDMRFLLLFS 345

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +    V      L      V  +HG   Q+ R      F      +
Sbjct: 346 FLRRNIKKKIIVFLSSCNCVKYFGELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGI 405

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R  G  GK+   +   ++  +
Sbjct: 406 LICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTGGKGKSLMFLTPSELGFL 465

Query: 358 DAIE 361
             ++
Sbjct: 466 RYLK 469


>gi|71999646|ref|NP_741347.2| hypothetical protein Y94H6A.5 [Caenorhabditis elegans]
 gi|51536860|gb|AAU05556.1| Hypothetical protein Y94H6A.5b [Caenorhabditis elegans]
          Length = 871

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 116/368 (31%), Positives = 195/368 (52%), Gaps = 3/368 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +  +GL   V  A+   G+ +PTPIQ KTIP ++   DV  +++TG+GKTA+FV+PM  +
Sbjct: 26  WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPM--L 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +  R      R L++ PTRELA Q     ++ G+   L  A L+GG   E Q   +   
Sbjct: 84  QKLKRRDTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHEN 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+L       L ++ ++ +V DEADR+ +MGF   +      +P +RQTLL
Sbjct: 144 PDILLATPGRLLHVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIPESRQTLL 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L   ++  L +P  + ++     ++ +   F        K  ALL    +  
Sbjct: 204 FSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVF-CMCRPDEKLFALLHLCRRMD 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  ++FC   K+V  +   L + G     ++  +D  +R   +  F E    ++V +
Sbjct: 263 RENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKMNIQKFHEKQNNILVVT 322

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP +  V N   P +A+ ++HR+GR  RAGR G A +L+A +++ ++  +  
Sbjct: 323 DVAARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSGTAISLIANDELPYLTDLFM 382

Query: 363 LIEKKVDW 370
            + K +++
Sbjct: 383 FLGKPINF 390


>gi|71747700|ref|XP_822905.1| ATP-dependent DEAD/H RNA helicase HEL64 [Trypanosoma brucei
           TREU927]
 gi|70832573|gb|EAN78077.1| ATP-dependent DEAD/H RNA helicase HEL64, putative [Trypanosoma
           brucei]
          Length = 568

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 122/427 (28%), Positives = 213/427 (49%), Gaps = 19/427 (4%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP- 58
            F  L   + P ++  +    +  PTP+Q ++ P++L   D+ G+A+TG+GKT  F++P 
Sbjct: 101 SFDHLCGIVPPYLLKKLTAQNFTAPTPVQAQSWPVLLSGRDLVGVAKTGSGKTLGFMVPA 160

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  I  +   R      +++       AQ  +   K     ++    + GG P   Q   
Sbjct: 161 LAHIAVQEPLRSGDGPMVVVLAPTRELAQQIEEETKKVIPGDVYCGCVYGGAPKGPQLGL 220

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG  +L+ TPGR++D  +  ++ ++ +  LV+DEADRMLDMGF P ++ I   +   R
Sbjct: 221 LRRGVHILVATPGRLIDFLDIKRINLHRVTYLVLDEADRMLDMGFEPQVRKICGQIRPDR 280

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT++FSAT   E+Q+++  F +   RI V +    A            +++K+     + 
Sbjct: 281 QTVMFSATWPREIQRLAAEFQKQWIRISVGSTELQANKDVTQRFILTQEFAKQDE--LRK 338

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +   +  ++FC  K+    L   L + G+   AIHG+ +QR R  IL+ F++     
Sbjct: 339 LMQEHREERVLVFCKMKRTADELERQLRRWGYDAMAIHGDKEQRQREFILARFRKDPRLC 398

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH-- 356
           +VA+D+AARGLDI  +  V N+D P + ++Y+HRIGRTGRAG  G AFTL+ K++ +   
Sbjct: 399 LVATDVAARGLDIKQLETVINYDFPMQIDDYVHRIGRTGRAGAKGDAFTLITKKEAQITP 458

Query: 357 --IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
             +  +  ++E+    +   +   N    +  + ++          +   GF R +    
Sbjct: 459 SVLKELIGILERAQQEIPDWMIEWNAQQPRYQVKRN----------RGMNGFGRHQSAPF 508

Query: 415 SQKSHIP 421
            +  H P
Sbjct: 509 LRNGHRP 515


>gi|300120104|emb|CBK19658.2| unnamed protein product [Blastocystis hominis]
          Length = 620

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 131/414 (31%), Positives = 218/414 (52%), Gaps = 43/414 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +++  + P ++ A+   G+ +PTPIQ + IP+ L+  D+ GIA+TG+GKT +FV+PML  
Sbjct: 181 WSEAAVHPAILRAIETLGFKEPTPIQRQAIPIELKGMDMIGIAKTGSGKTCAFVVPMLQY 240

Query: 63  LEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNY-----------NLTVAL 105
           + +         + + P  +++ PTRELA Q+ D+ EK  +              + +A 
Sbjct: 241 VIQAPIETRLQSKEQGPLAVVMAPTRELAKQIRDDAEKLAQFCVDERLAQSRSPRIRIAC 300

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           ++GG     Q+  L  G D+LI TPGR+LD   R  +++N    +V+DEADRM+D GF  
Sbjct: 301 MVGGESIVEQSSFLSNGCDILIGTPGRLLDCLERHFVVLNQTNYIVLDEADRMIDEGFEE 360

Query: 166 YIQNITSLV-----------------------PFTRQTLLFSATMTDELQKVSENFLQNP 202
            +  +   +                          R T++FSATM  +++ +++ +++ P
Sbjct: 361 SVNAVMDAMGSTLKSEEEEDIEKAAEGVASLTNMYRTTIMFSATMPPKVEAIAKRYMRCP 420

Query: 203 KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLC 262
            ++ + TPS T +      +    +  K   LL+     ++     I+FCN+K+ V  + 
Sbjct: 421 VQVTIGTPSGTTKVDIKQIINMVRESDKPSMLLK---IIRNNETPAIVFCNRKETVDTVT 477

Query: 263 HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322
            SL   G    A+ G I Q  R + L +F+ G   +MVA+++AARGLDI  V  V N+D+
Sbjct: 478 RSLHDSGHRTVALRGGIQQSRREEALEDFRRGVYDIMVATNVAARGLDIKGVKLVVNYDM 537

Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
           P+  E YIHRIGRTGRAG  G A +LV ++D      + + ++K+   +  DL 
Sbjct: 538 PDSLELYIHRIGRTGRAGATGLAVSLVTEKDSALFPDLVEYLKKEKQQIPIDLE 591


>gi|145614688|ref|XP_361928.2| hypothetical protein MGG_11403 [Magnaporthe oryzae 70-15]
 gi|152032666|sp|A4RN46|PRP5_MAGO7 RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|145021588|gb|EDK05717.1| hypothetical protein MGG_11403 [Magnaporthe oryzae 70-15]
          Length = 1012

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 131/461 (28%), Positives = 218/461 (47%), Gaps = 13/461 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL+  ++  +    Y KPT IQ++ +P+++   DV G+A+TG+GKT +F+LPM  
Sbjct: 379 KWSLCGLTRPILDVIAKLEYDKPTAIQMQALPVIMSGRDVVGVAKTGSGKTMAFLLPMFR 438

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++          P  LIL PTRELA Q+  + + + K   L      GG P + Q   L
Sbjct: 439 HIKDQEPVKDNEGPIGLILTPTRELAVQIFRDCKPFLKTLGLRAVCAYGGPPIKDQIADL 498

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++ T GR++D         + +     +V+DEADRM DMGF P +  I + V  
Sbjct: 499 KRGAEIVVATTGRMIDLLAANQGRVVSLRRTTYIVLDEADRMFDMGFEPQVMKIFANVRP 558

Query: 177 TRQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            RQT+LFSATM   +   V +      +          +E  +   +        +   L
Sbjct: 559 DRQTVLFSATMPKIMDALVKKVLKNPVEIEVGGKSVVASEITQIVEIRDEKSKFNRLLEL 618

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L   D     +IF  +++    L   L ++G+   ++HG  DQ  R   +S+FK G 
Sbjct: 619 LGELYKDDDDVRSLIFVERQEKADELLRELLRKGYGCMSLHGGKDQVDRDSTISDFKSGV 678

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             +M+A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T V +E   
Sbjct: 679 CPVMIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFVTEEQEN 738

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPL-EKI------DIAQHNHARKNNPIPQKSTGFDR 408
               I K +E+    +   L  +     EK+      D +            ++    +R
Sbjct: 739 CAIGIAKALEQSGQPVPEKLIEMRKAFREKVKAGKAKDQSGFGGKGLEKLDKEREAARNR 798

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNM 449
            +K + ++      ++ +K +K  +   +  +  LG    +
Sbjct: 799 ERKTHKAEGEEDDAEDDKKTTKNDEKTDKASSAILGAASAI 839


>gi|307182555|gb|EFN69748.1| ATP-dependent RNA helicase bel [Camponotus floridanus]
          Length = 692

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 140/396 (35%), Positives = 206/396 (52%), Gaps = 19/396 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L+  +  ++  AGY KPTP+Q   IP+++ R DV   AQTG+GKTA+F++P+L 
Sbjct: 209 SFDEVKLTEIIKNSIALAGYDKPTPVQKYAIPIIIGRRDVMACAQTGSGKTAAFLVPILN 268

Query: 62  ILEKGRARV------------RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            + +   R             + P  L+L PTRELA Q+ D   K+     +  A++ GG
Sbjct: 269 QIYESGPRPPPVQANSSGRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGG 328

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q ++L+RG  +L+ TPGR++D   RGK+ ++N   LV+DEADRMLDMGF P I+ 
Sbjct: 329 SNIVDQMRELDRGCHLLVATPGRLVDMLGRGKIGLHNCRYLVLDEADRMLDMGFEPQIRR 388

Query: 170 ITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I            QTL+FSAT   E+Q ++ +FL N   + V    ST+E I    V   
Sbjct: 389 IVQEDNMPPTGERQTLMFSATFPKEIQMLARDFLSNYIFLAVGRVGSTSENITQKIVWVE 448

Query: 226 AQYSKKCALLQQLLQSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
               +   L      +          ++F   KK    L   L   G+ V +IHG+  QR
Sbjct: 449 EHDKRSYLLDLLQASNFSDPSAESLTLVFVETKKGADMLEEYLATMGYPVTSIHGDRTQR 508

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P   E Y+HRIGRTGR G  
Sbjct: 509 EREEALRRFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGNL 568

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +    ++   +  +  L+ +    L   L  +
Sbjct: 569 GLATSFFNHKNHNLVRDLVSLLIEANQELPPWLDDM 604


>gi|159478699|ref|XP_001697438.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158274317|gb|EDP00100.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 515

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 127/375 (33%), Positives = 205/375 (54%), Gaps = 10/375 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA++ L P +V  +    Y  PTPIQ + +P+ L   D+ G A+TG+GKTASF +PM+ 
Sbjct: 114 SFAEMNLHPNIVADIQHHKYETPTPIQAQGLPIALSGRDILGCAETGSGKTASFSIPMIQ 173

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNK 117
               ++       P  L+L PTRELA Q+    + + +    ++  ++++GG+P   Q  
Sbjct: 174 HCLNQQPLRAGDGPMALVLAPTRELAQQIEREVKAFSRSSGRSVRTSIVVGGVPMHEQRH 233

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G +V++ TPGR +DH  +G   +  I  +V+DEADRMLDMGF P I+ + + +P  
Sbjct: 234 DLRNGVEVVVATPGRFIDHLQQGNTNLGRISYVVLDEADRMLDMGFEPQIKEVMNNLPPK 293

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC----- 232
            QTLLFSATM  E+++++  +L  P  +++   S+    +                    
Sbjct: 294 HQTLLFSATMPKEIEELARAYLNKPVTVKIGAVSTPTANVSQRLEHAPEPQKLDILVALI 353

Query: 233 -ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
            A +         M   I+F  +K     +  +L + G +  A+HG ++Q  R   L +F
Sbjct: 354 SAEVAAEAAGGPPMPLTIVFVERKTRCDEVAAALREDGINANALHGGLNQNEREAALRDF 413

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
            +G I+++VA+D+A+RGLDI  +GHV N D+P   E+Y+HRIGRTGRAG  G+A +L   
Sbjct: 414 AKGDIKVLVATDVASRGLDIKGIGHVINMDLPKTFEDYVHRIGRTGRAGTKGRATSLWND 473

Query: 352 EDIKHIDAIEKLIEK 366
            D   +  I++ + +
Sbjct: 474 RDSYLVAQIKQALSE 488


>gi|327304765|ref|XP_003237074.1| ATP-dependent RNA helicase DBP4 [Trichophyton rubrum CBS 118892]
 gi|326460072|gb|EGD85525.1| ATP-dependent RNA helicase DBP4 [Trichophyton rubrum CBS 118892]
          Length = 815

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 121/455 (26%), Positives = 197/455 (43%), Gaps = 26/455 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F DL LS      +  + + + T IQ + IP  LQ  D+ G A+TG+GKT +F++P + 
Sbjct: 51  SFTDLPLSEPTTLGLSASHFKELTDIQSRAIPHALQGRDILGAAKTGSGKTLAFLVPVLE 110

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  K          LI+ PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L 
Sbjct: 111 NLFRKQWTEYDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLIIGGKSLQEEQERLG 170

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +           +NI++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 171 RMNILVCTPGRMLQHMDQTAAFDTDNIQMLVLDEADRIMDMGFQSTVDAIVEHLPKERQT 230

Query: 181 LLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT T ++      +             SS   +             K   L   + 
Sbjct: 231 MLFSATQTKKVSDLARLSLQDPEYISVHQAASSATPSTLQQHYVVTPLPDKLDTLWSFIR 290

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S  +        +++   V       + G  +  +HG   Q +R+ I   F       +
Sbjct: 291 SSLKSKIIVFFSSSKEVRFVYEAFRQMQPGIPLLHLHGRQKQGARLDITHKFSASKNSCL 350

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKHID 358
            A+D+ ARGLD P V  V   D P  ++ YIHR+GRT R  R G+A   +   E++  + 
Sbjct: 351 FATDVVARGLDFPAVDWVIQLDCPEDSDTYIHRVGRTARYERDGRAVLFLDPSEEVGMLS 410

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +E   +KK+            P+EKI+I  +      + +  ++  F   +  Y  QK+
Sbjct: 411 RLE---QKKI------------PIEKINIRANKQQSIKHQL--QNMCFKDPQLKYLGQKA 453

Query: 419 HIPLKESEKISKLQQDIQ------ENDADSLGFRG 447
                +S  I K ++         E    SLG  G
Sbjct: 454 FTSYVKSIHIQKDKEVFDVKALPLEEYTASLGLPG 488


>gi|308271521|emb|CBX28129.1| ATP-dependent RNA helicase rhlB [uncultured Desulfobacterium sp.]
          Length = 530

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 129/375 (34%), Positives = 203/375 (54%), Gaps = 4/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  + P+V+  + DAG+   TPIQ + +PL L   DV G AQTGTGKTA+F+  + + 
Sbjct: 36  FDEFKIPPEVLMGLKDAGFTLCTPIQARALPLSLAGQDVAGQAQTGTGKTAAFLTTIASR 95

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +     RV   P  LI+ PTRELA Q+ +  E   ++  LT+  +IGGI ++ Q   L +
Sbjct: 96  ILSLENRVPRLPSALIVAPTRELAQQIHEEAEVLFRHTGLTLMQVIGGIDYQKQADMLRK 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV+ICTPGRI+D+F +G      I+I+VIDEADR+LD+GF   ++ I   +P   +  
Sbjct: 156 GVDVVICTPGRIIDYFKQGVFKTEGIKIIVIDEADRLLDLGFSKDMRYILQKLPNYSKRQ 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
               + T   + +   +        ++        +E      Y    +    L   L  
Sbjct: 216 SMLFSATLSHRVMELTYEYMNLPEFISVTPEDV-VVEGINQILYHVSKESKLSLLLGLLK 274

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++     +IF N K +V  L   L+  G+    I G++ Q  R  ++  +K+G I+++VA
Sbjct: 275 REKWSRVLIFANTKSSVERLTGKLKGNGYPAEGITGDLPQSKRFSLMERYKKGNIKILVA 334

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RG+ + D+ HV N+D+PN  E Y+HRIGRT RAG+ G A  L   E + +++ IE
Sbjct: 335 TDVASRGIHVEDISHVINYDLPNDGEIYVHRIGRTARAGKEGSAICLSCDEFVLNLENIE 394

Query: 362 KLIEKKV--DWLNGD 374
             I  K+  +W   D
Sbjct: 395 NKIGYKIPVEWAEDD 409


>gi|300175700|emb|CBK21243.2| unnamed protein product [Blastocystis hominis]
          Length = 485

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 143/398 (35%), Positives = 216/398 (54%), Gaps = 14/398 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ---RHDVCGIAQTGTGKTASFVLP 58
            F+D G+   +  A+ + G+  P+ IQ   + + LQ     D+  IA+TG+GKT +F +P
Sbjct: 53  TFSDYGVCDTLCQAIDNLGWKHPSSIQRDVLKIALQEDQNKDIIAIAETGSGKTGAFAIP 112

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           ++  L     R+     LI+ PTRELA Q+++ FE  G +  L  A+++GGI    Q   
Sbjct: 113 IIQRLIDNPQRMYA---LIVTPTRELAFQISEQFEALGSSVGLKTAVIVGGIDMVQQALA 169

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIE-ILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L R   V++ TPGR++DH    K    N    LV+DEADR L M F   I  I S  P  
Sbjct: 170 LARKPHVVVGTPGRLVDHLENTKGFSLNTMKYLVLDEADRCLSMDFEEAIDKILSCFPKE 229

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R T LFSATMT ++ K+    LQ+P +I+V++   T  T+           +K       
Sbjct: 230 RVTYLFSATMTQKVVKLQRASLQDPVKIQVSSKYQTVSTL---IQQYLFIPAKYKECYLA 286

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            + ++   K+ I+F +   +   L   L   GF    I+GN+ Q  R+  L+ FKEG   
Sbjct: 287 FIMNEFRGKSTILFVSTCSSSQLLTLFLRNLGFKAVCINGNLSQVKRLGALNKFKEGARN 346

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLDIP+V  V N+D+P   ++Y+HR+GRT RAG+ G+A T V + D++  
Sbjct: 347 ILIATDVASRGLDIPEVDLVVNYDIPGNGKDYVHRVGRTARAGKSGRAITFVTQYDVESY 406

Query: 358 DAIEKLIEKKVDWL----NGDLSSLNPPLEKIDIAQHN 391
             IEKLIEK++D      N  L+ L    E + IAQ  
Sbjct: 407 QRIEKLIEKRLDAYPCSENEALTYLQTTTEALQIAQRE 444


>gi|303283946|ref|XP_003061264.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457615|gb|EEH54914.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 809

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 137/462 (29%), Positives = 233/462 (50%), Gaps = 31/462 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F DL LS +++ A    GY  PTPIQ   +PL L   D+CG A TG+GKTA+F+LP + 
Sbjct: 179 SFNDLNLSRQLIRACTALGYDVPTPIQAAVVPLALTGRDICGRAVTGSGKTAAFMLPLLE 238

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L +G         L+L PTRELA QV     +  +  ++  AL++GG+    Q  +L 
Sbjct: 239 RMLHRGARAAAATHVLVLVPTRELAVQVHQMTMRLAQFTSIRAALVVGGLSANTQAAELR 298

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              ++++ TPGR++DH      +   ++  LV+DEADR+L+MGF+  I+ I    P  RQ
Sbjct: 299 TRPEIVVATPGRLIDHVRNTHSVGLEDLAALVLDEADRLLEMGFLEEIREIVRHCPTRRQ 358

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT+T  +Q+++E  +++P R+  +   +T  T+    +      +         L
Sbjct: 359 TMLFSATLTSGVQELAEFSMKHPARLSADQIGTTPGTLTEEVLRLRPGAASMKEAHLMAL 418

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   K  I+F   K+    L   +   G     +HG++ Q  R+  L +F+ G    +
Sbjct: 419 VNRTFTKKSIVFSRTKQQAHRLKIVMGLAGIVAAELHGDLSQTQRLAALESFRVGEASHL 478

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V ++D P    +Y+HR+GRT RAG+ G A T + + D K + A
Sbjct: 479 VATDVAARGLDIAGVDAVISYDAPRTLASYLHRVGRTARAGKRGTALTFMEESDRKLVKA 538

Query: 360 IEK---------LIEKKVDWLNGDLSSLNPPLEKIDIAQH-------------------N 391
           + K         L    V+  +  + ++   +++++  +                     
Sbjct: 539 VSKRGSKLVARSLPNHVVEEWHAKIEAMADQIKEVEYEERAEKHLNRAEMEAIKAENLMT 598

Query: 392 HARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQ 433
           H+++ +  P K T F   ++  +  K+ +   E E + +L+ 
Sbjct: 599 HSKEIHARPAK-TWFQSERQKKTLNKASLKASEREDVDELED 639


>gi|85057334|ref|YP_456250.1| superfamily II DNA/RNA helicase [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789439|gb|ABC65171.1| superfamily II DNA and RNA helicase [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 547

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 147/461 (31%), Positives = 250/461 (54%), Gaps = 34/461 (7%)

Query: 1   MD--FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           M+  F  L +  +   A+ +  ++  TPIQ   IP +++ HDV G AQTGTGKT +F +P
Sbjct: 1   MNTLFEQLPILEQTKKALKELNFIDTTPIQALVIPEIIKGHDVIGQAQTGTGKTFAFGIP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNK 117
           ++  +     +++  ++LIL PTREL  QV +  +K  + Y  + +A++ GG  +  Q +
Sbjct: 61  IIEKINP---KIQKTQSLILCPTRELTLQVYEELKKLLRFYQEIRIAVVYGGESYTKQFR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE    ++I TPGR +DH  RGK+ ++ ++IL +DEAD ML MGF   ++ I   +P  
Sbjct: 118 SLEAKPHLIIATPGRAIDHLERGKIDLSALKILTLDEADEMLKMGFQEALETILKKIPEE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT+   ++K++  + ++ K ++V   +     IE  +         K  +   
Sbjct: 178 RQTVLFSATLPPFIKKIASKYQKDTKILQVPVKNIAVNAIEQNYFLVKEVDKAKLLVRLL 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                    + I+F N KK+V  +   L+ +GF   A+HG++ Q  R  +++NF++G I+
Sbjct: 238 ---DLKKDYSTILFANTKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIK 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARGLDI D+  V N+D+P+  E Y+HRIGRTGRAG+ G A++L++   +  +
Sbjct: 295 ILIATDVAARGLDISDIKMVINYDLPHEDEVYVHRIGRTGRAGKKGLAYSLISPRKVSQL 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             +E  +++K+  L  D+ S+     K+  A+    +  N I +                
Sbjct: 355 KKLEYYLKEKITLL--DIPSVQSI--KLQNAKDLEKKILNIIEKN--------------- 395

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
                KE    + L Q + EN +     +G +  F LPK R
Sbjct: 396 -----KEETTPNPLAQKLLENFSSEQIIQGLLKNF-LPKER 430


>gi|218889195|ref|YP_002438059.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa LESB58]
 gi|218769418|emb|CAW25178.1| RNA helicase DbpA [Pseudomonas aeruginosa LESB58]
          Length = 458

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 143/404 (35%), Positives = 216/404 (53%), Gaps = 16/404 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LS  ++  +   GY + TPIQ +++PL+LQ HD+   A+TG+GKTA+F L +L+ 
Sbjct: 6   FSSLPLSADLLANLDSLGYREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLALLSP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L     R    + L+L PTRELA QVA    +  +  +    L +  G+P+  Q   LE 
Sbjct: 66  L---NPRYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI +H  +G L+++ +  LV+DEADRMLDMGF   I  I   +P  RQTL
Sbjct: 123 GAHVVVGTPGRIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPERRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D ++K+++ F     R        +           +    K+       L  
Sbjct: 183 LFSATYPDGIEKLAKTF----MRDPRQVRVESLHADSQIEQRFFEIDPKQRMDAVVRLLQ 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ + FC  ++    L  +L+ Q  S  A+HG+++QR R ++L+ F   +  ++VA
Sbjct: 239 HFRPQSSVAFCQTRQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++    E +IHRIGR+GRAG  G A +LVA  +     AIE
Sbjct: 299 TDVAARGLDIAALETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIE 358

Query: 362 KLIEKKVDW-----LNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
            L ++ + W     L      L PP+  + IA     RK+   P
Sbjct: 359 DLQKQPLAWYALGQLKASPEPLLPPMSTLCIA---GGRKDKVRP 399


>gi|262381389|ref|ZP_06074527.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B]
 gi|262296566|gb|EEY84496.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B]
          Length = 408

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 134/410 (32%), Positives = 219/410 (53%), Gaps = 9/410 (2%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
             + + TP+Q  TIP++L+  D+   AQTGTGKTA++VLP++  L KG         +I+
Sbjct: 1   MNFDETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINELSKGCHPTDAVNAVIM 60

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIG----GIPFEAQNKKLERGADVLICTPGRIL 134
            PTRELA Q+    + +        A+ +     GI +E Q + LE GAD++I TPGR+L
Sbjct: 61  APTRELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQKRGLEMGADIVIATPGRLL 120

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
            H   G + ++ +   V+DEADRMLDMGF   I  +   +P   QT++FSATM  +++ +
Sbjct: 121 SHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPPYCQTIMFSATMPPKIRTL 180

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           ++  L++P+ +++         ++  ++    Q  K    + Q L +Q   +  IIF + 
Sbjct: 181 AKTILKDPEEVKIAISRPPESIMQTAYICYDPQKLK----ILQDLFTQSRPQRVIIFSSS 236

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K  V  L  +L++  F+V A+H +++Q  R +++  FK G I ++VA+D+ ARG+DI D+
Sbjct: 237 KMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVARGIDINDI 296

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
             V NFD+P+  E+Y+HRIGRT R     G A T V+ ++      IE  +EK+V  +  
Sbjct: 297 KLVVNFDIPHDPEDYVHRIGRTARGTNGEGLAITFVSIDEQAQFKRIEDFLEKEVYKIPV 356

Query: 374 DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLK 423
                  PL + +    N   +  P   +  G   R +  +      P K
Sbjct: 357 SPEFGEVPLYEPEKYGMNKRGRGRPRKSEDKGSSSRPQKRNMGHRGRPKK 406


>gi|124506289|ref|XP_001351742.1| snrnp protein, putative [Plasmodium falciparum 3D7]
 gi|23504671|emb|CAD51549.1| snrnp protein, putative [Plasmodium falciparum 3D7]
          Length = 1123

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 120/427 (28%), Positives = 197/427 (46%), Gaps = 27/427 (6%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
             + +  LS  ++ A+  A Y KPTPIQ++ IP+ L+  D+ GIA+TG+GKTA+FVLPML+
Sbjct: 699  KWEESNLSNDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLS 758

Query: 62   ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             +++            P  L++ P+RELA Q+ +   K+    +     ++GG   EAQ 
Sbjct: 759  YVKQLPPLTYETSQDGPYALVIAPSRELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQA 818

Query: 117  KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT----- 171
             +L RG +++I TPGR+ D   +   ++N    +++DEADRM+DMGF   +  I      
Sbjct: 819  FELRRGVEIVIGTPGRLQDCLEKAYTVLNQCNYVILDEADRMMDMGFEDTVHYILDKIPT 878

Query: 172  ---------------SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
                            +     +    +   +  +    E   +   R            
Sbjct: 879  SNLKSEDDALALQEEMMTKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGA 938

Query: 217  IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
             +          ++     +     +      I+F NQKK    +  S+ K  +   A+H
Sbjct: 939  GKRSIEQKLEFLTEGKKKQKLQEILEMYEPPIIVFVNQKKVADIISKSITKMKYKAVALH 998

Query: 277  GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
            G   Q  R + LS FK     ++VA+D+A RG+D+  V  V NFD+P   E+Y HRIGRT
Sbjct: 999  GGKAQEIREQTLSAFKNAEFDILVATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRT 1058

Query: 337  GRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
            GRAG  G A + + + D      +++ +    + +  +L+  N P  K+         K 
Sbjct: 1059 GRAGMKGLAISFITEHDSHLFYDLKQFLISSNNIVPLELA--NNPASKVKPGTVMQTPKK 1116

Query: 397  NPIPQKS 403
            N I  K+
Sbjct: 1117 NQILYKN 1123


>gi|295664398|ref|XP_002792751.1| ATP-dependent RNA helicase drs1 [Paracoccidioides brasiliensis
           Pb01]
 gi|226278865|gb|EEH34431.1| ATP-dependent RNA helicase drs1 [Paracoccidioides brasiliensis
           Pb01]
          Length = 835

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 148/450 (32%), Positives = 222/450 (49%), Gaps = 25/450 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L 
Sbjct: 314 SFQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILE 373

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++
Sbjct: 374 RLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKK 433

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 434 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 493

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+ + K+    L  P R+ VN    T  T+   FV        K       L 
Sbjct: 494 MLFSATMTNTIDKLIRVGLNRPVRLMVNAQKQTVGTLVQEFVRLRPGREDKRLGYLVTLC 553

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   KK    +       G     +HG++ Q  R+K + +F++G +  ++
Sbjct: 554 KTVYKDRVIIFFRAKKEAHRVRIIFGLFGLKAAELHGSMSQEQRIKSVESFRDGKVSFLL 613

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA- 359
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + A 
Sbjct: 614 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAA 673

Query: 360 -----------IEKLIE--------KKVDWLN---GDLSSLNPPLEKIDIAQHNHARKNN 397
                      + +LI+         KV+ +     ++       +++  A+    R +N
Sbjct: 674 VKTGRAQGAKIVSRLIDVAEADKWAAKVEEMEDEVKEILKEEKEEKQLAQAEMEVTRGSN 733

Query: 398 PIPQKSTGFDRRKKN-YSSQKSHIPLKESE 426
            I  +     R K+  + S+K  +  K+  
Sbjct: 734 LISHEKEIMSRPKRTWFESEKEKLQAKQRA 763


>gi|121945880|dbj|BAF44659.1| RNA helicase [Neobenedenia girellae]
          Length = 670

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 135/388 (34%), Positives = 206/388 (53%), Gaps = 17/388 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L   +   V  A Y +PTP+Q   +P++    D+   AQTG+GKTA+F++PML  
Sbjct: 191 FTDLDLHKIIRDNVELARYSRPTPVQKYAVPIIAAGRDLMACAQTGSGKTAAFLIPMLNN 250

Query: 63  LEKG------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           +                 R + P  L++ PTRELA+Q+ D  +K+    ++   ++ GG 
Sbjct: 251 MFVHGPADSLDRCNEEDRRAQFPTGLVIAPTRELASQIYDEAKKFSYRSHVRPCVVYGGA 310

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ-- 168
             + Q   L RG +V+  TPGR++D  +RGKL ++    LV+DEADRMLDMGF P I+  
Sbjct: 311 AIKGQLSDLSRGCNVIFATPGRLIDIIDRGKLKLDCCRFLVLDEADRMLDMGFEPQIREI 370

Query: 169 -NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
                     RQTL+FSAT   ++Q ++++FL++   + V    ST+E I    V     
Sbjct: 371 IQRYMPNGDNRQTLMFSATFPPQIQNLAKDFLKSYIFLSVGRVGSTSENITQSLVWVEEV 430

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             +        +         ++F   K+   +L   L  + FSV +IHG+  Q  R + 
Sbjct: 431 DKRNAL--LDFIDFTKEDNLTLVFVETKRGADSLEEFLYNREFSVSSIHGDRTQDERERA 488

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L NF+ G   +MVA+ +AARGLDIP+V HV N+D+PN  + Y+HRIGRTGR G  GKA +
Sbjct: 489 LKNFRSGKTPIMVATAVAARGLDIPNVKHVINYDLPNDIDEYVHRIGRTGRVGNLGKATS 548

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDL 375
               ++      + +L+E+    +   L
Sbjct: 549 FFNDKNKNLARDLVELLEEANQEVPSWL 576


>gi|306840535|ref|ZP_07473294.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO2]
 gi|306289550|gb|EFM60768.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO2]
          Length = 549

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 152/421 (36%), Positives = 235/421 (55%), Gaps = 8/421 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+ HD+ GIAQTG+GKTA+F LP+L  
Sbjct: 103 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGHDILGIAQTGSGKTAAFSLPILQK 162

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 163 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 222

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 223 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 282

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 283 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEI---TQVVHPVPTKEKRRLLSAML 339

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 340 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 399

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 400 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 459

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E++   K+   +  +     P+ K    Q    R      +K+     R+    + + H
Sbjct: 460 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--GQRTEQAESRKAPAHKHRRPAQKAGEQH 517

Query: 420 I 420
            
Sbjct: 518 R 518


>gi|114046738|ref|YP_737288.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113888180|gb|ABI42231.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 409

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 169/413 (40%), Positives = 241/413 (58%), Gaps = 16/413 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L  ++V  + + GY++PTPIQ++ IP +L + DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFSALSLHSQLVNTLAELGYLQPTPIQVEAIPAILAKQDVMAGAQTGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L         P+ +   +L PTRELA QV  +F KY K  ++ V +  GG+  EAQ  
Sbjct: 61  QQLLLDNESQDAPKDIRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           + + G DVLI TPGR+LDH  +G L +  + +LV DEADRMLDMGF+  I+ +   VP  
Sbjct: 121 EFKAGVDVLIATPGRLLDHLRQGVLNLKYLSVLVFDEADRMLDMGFMDEIKAVLKQVPAQ 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT+ D +   S+N L++PK IEV   ++TA  +       YA  S +      
Sbjct: 181 RQTLLFSATLDDSIFGFSKNLLRDPKLIEVAKRNTTAAQV---EQRVYAIDSDRKTEFVS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L      +  +IF   K+ V  L   L + G +  A HG++ Q +R K+L +FK+G +Q
Sbjct: 238 HLVRSKNWQQVLIFSRTKQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLVQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI D+ +V NF++P  AE+YIHRIGRTGRAG  G A TL ++ED   +
Sbjct: 298 VLVATDVAARGLDIADLQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLL 357

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           + +E L++K++   W  G     N              R+N+   QK     R
Sbjct: 358 EEVEALLDKRLPQQWYPGFEPDFNK--------MEPEPRRNSKAAQKQRAKKR 402


>gi|121708606|ref|XP_001272186.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
 gi|143019610|sp|A1CIQ5|HAS1_ASPCL RecName: Full=ATP-dependent RNA helicase has1
 gi|119400334|gb|EAW10760.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
          Length = 625

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 121/408 (29%), Positives = 205/408 (50%), Gaps = 7/408 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS K + A+ + G+   T IQ +TIP +L   DV G A+TG+GKT SF++P + 
Sbjct: 144 KFTELGLSEKTLKAINEMGFETMTEIQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVE 203

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + R    + ++ PTRELA Q+     +  ++++ T  ++IGG    A+ +KL 
Sbjct: 204 MLSALRFKPRNGTGVLVVSPTRELALQIFGVARELCQHHSQTYGIVIGGANRRAEAEKLM 263

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-VPFTR 178
           +G ++LI TPGR +    N    +  N++ LVIDEADR+L++GF   ++ I  +     R
Sbjct: 264 KGVNLLIATPGRLLDHLQNTQGFVFKNLKTLVIDEADRILEVGFEDEMRQIVKILPSEER 323

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT T +++ ++   L+               T+E          + K  LL   
Sbjct: 324 QTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFLLLFS 383

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +    V      L      V  +HG   Q+ R      F       
Sbjct: 384 FLKRNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAKQGT 443

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R A   G++   +   ++  +
Sbjct: 444 LICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGANAKGRSLMFLQPSEVGFL 503

Query: 358 DAIE--KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
             ++  ++   + ++    + ++   LEK+ I Q+ +  K+     +S
Sbjct: 504 KHLKEARVPVVEFEFPASKIVNVQSQLEKL-IGQNYYLNKSAKEGYRS 550


>gi|226943135|ref|YP_002798208.1| DEAD/DEAH box ATP-dependent RNA helicase [Azotobacter vinelandii
           DJ]
 gi|226718062|gb|ACO77233.1| DEAD/DEAH box ATP-dependent RNA helicase [Azotobacter vinelandii
           DJ]
          Length = 434

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 151/429 (35%), Positives = 233/429 (54%), Gaps = 13/429 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL   ++  +   GY+ PTP+Q + IP +L   D+   AQTG+GKTA F LP+L
Sbjct: 1   MTFAYLGLIKPLLRTLPVLGYILPTPVQRQAIPALLAGRDLLVAAQTGSGKTAGFALPVL 60

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
               LE   A     R L+L PTRELA QV       G    L  A+  GG+    Q   
Sbjct: 61  QRLTLEGSPAAANSVRALVLVPTRELAEQVHGTIRACGMELPLRTAVAYGGVSINPQMML 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G DVL+ TPGR+LD + +  +  + ++ILV+DEADRMLD+GF   ++ +  L+P  R
Sbjct: 121 LRPGIDVLVATPGRLLDLYRQNAVRFDQLQILVLDEADRMLDLGFSRELEELFVLLPAQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLL SAT ++E+++++   L++P  IE++ P+S A ++            K+ A L   
Sbjct: 181 QTLLCSATFSEEIRQIATGLLRDPLTIEISAPNSAAPSV---AQWMIPVDKKRKAELFLH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  ++  +  ++F   +K V  L   L+++G+   AIHG++ Q +R++ L  FK   +Q+
Sbjct: 238 LLERERWEQVLVFSRTRKGVERLAEELQQRGYRAGAIHGDLPQPARLRALEQFKADELQV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  +  V N D+P   E Y+HRIGRTGRAG  G+A +LV  ++++ + 
Sbjct: 298 LVATDVAARGLDIQGLPLVVNLDLPVAPEYYVHRIGRTGRAGASGEAISLVCADEVEQLA 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIA------QHNHARKNNPIPQKSTGFDRRKKN 412
           AIE LI + +     +    +P     + A            +  P P+     D + + 
Sbjct: 358 AIEALIRQLLPR--REEPDFSPEHRVPETALGGVILSKPKQPRQKPAPKFGDRLDDKARP 415

Query: 413 YSSQKSHIP 421
                  +P
Sbjct: 416 AVEAVRQMP 424


>gi|291240646|ref|XP_002740231.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked-like
           [Saccoglossus kowalevskii]
          Length = 694

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 144/448 (32%), Positives = 232/448 (51%), Gaps = 23/448 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D+ L   +   + ++ Y +PTP+Q   +P++  + D+   AQTG+GKTA+F+LP+L+
Sbjct: 231 EFSDIDLGEIIQSNIKNSTYARPTPVQKYALPIIRLKRDLMACAQTGSGKTAAFLLPILS 290

Query: 62  ILEKGRA----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
            + +             R   P  L+L PTRELA+Q+ D   K+    ++   ++ GG  
Sbjct: 291 QIYENGPGKIPESRYARRKHFPLGLVLAPTRELASQIYDEARKFSYRSHVRPCVVYGGAD 350

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ--- 168
              Q ++L+RG  +L+ TPGR++D   RGK+ ++ I+ +V+DEADRMLDMGF P I+   
Sbjct: 351 VGGQMRELDRGCHLLVATPGRLVDMMERGKIGLDQIKWVVLDEADRMLDMGFEPQIRRIV 410

Query: 169 -NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
              T      RQ L+FSAT   E+Q ++ +FL N   + V    ST+  I    V     
Sbjct: 411 EQDTMPKTGERQMLMFSATFPKEIQILARDFLDNYIFLAVGRVGSTSVNITQKVVWVDEN 470

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             +   L        D++   ++F   KK   +L   L + G    +IHG+  QR R + 
Sbjct: 471 DKRSFLLDLLSATGSDSL--TLVFVETKKGADSLEDFLYRDGHRATSIHGDRSQREREEA 528

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L +F+ G   ++VA+ +AARGLDIP+V HV NFD+P+  E Y+HRIGRTGR G  G A +
Sbjct: 529 LRSFRTGQTPILVATAVAARGLDIPNVKHVINFDMPSDIEEYVHRIGRTGRVGNLGLATS 588

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
               ++   +  + +LI +    +   L S+       +  Q    R+  P  +   GF 
Sbjct: 589 FFNDKNRNVVRDLLELIMETKQEVPSWLESMA-----YEAKQSGGGRRGAPRNRYYGGFG 643

Query: 408 RR--KKNYSSQKSHIPLKESEKISKLQQ 433
            R  ++    + S  P+  +   +  QQ
Sbjct: 644 SRDYRQGNRGRGSGTPVYGNAAFTGYQQ 671


>gi|255088653|ref|XP_002506249.1| predicted protein [Micromonas sp. RCC299]
 gi|226521520|gb|ACO67507.1| predicted protein [Micromonas sp. RCC299]
          Length = 1063

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 120/379 (31%), Positives = 197/379 (51%), Gaps = 7/379 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            +A  GLS +V+  +  +G+ KP PIQ + +P+++   D  G+A+TG+GKT S+VLPM  
Sbjct: 397 TWAQAGLSNRVMELIRRSGFDKPMPIQCQALPVIMSGRDCIGVAKTGSGKTLSYVLPMLR 456

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               ++       P  +I+ PTREL  Q+  + +K+G+   L    + GG     Q  +L
Sbjct: 457 HVKDQRPIESGDGPIGMIMGPTRELVTQIGKDCKKFGRAAGLVAVSVYGGSGVATQIGEL 516

Query: 120 ERGADVLICTPGRILDHFNR---GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RG +++ CTPGR++D           +  +  +V+DEADRM DMGF P I  I + +  
Sbjct: 517 KRGCEIVACTPGRMIDVLTTGAGRITNLRRVTYMVLDEADRMFDMGFEPQITRIMNNLRP 576

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++ + L NP  I+V   S          +        +   + 
Sbjct: 577 DRQTVMFSATFPHAMEALARSALTNPVEIQVGGRSVVNSD--IEQIVEMRAEEDRFLRVL 634

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL         IIF   +     +   L + G+   ++HG  +Q  R   +++FK    
Sbjct: 635 ELLGEWYERGKIIIFVASQDKCDQVFRDLLRSGYPCLSLHGGKEQSDRECTIADFKSDVC 694

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+ +AARGLD+  +  V N+D PN  E+Y+HR+GRTGRAG  G A T +++E+ K 
Sbjct: 695 NILVATSVAARGLDVSGLRLVVNYDTPNHLEDYVHRVGRTGRAGNKGTAVTFISQEEEKF 754

Query: 357 IDAIEKLIEKKVDWLNGDL 375
              + K +      +  DL
Sbjct: 755 APDLVKAMTDAKQPVPSDL 773


>gi|195995533|ref|XP_002107635.1| hypothetical protein TRIADDRAFT_51339 [Trichoplax adhaerens]
 gi|190588411|gb|EDV28433.1| hypothetical protein TRIADDRAFT_51339 [Trichoplax adhaerens]
          Length = 418

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 107/376 (28%), Positives = 182/376 (48%), Gaps = 21/376 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF D  L   ++  + + G+ KP+PIQ ++IP+ +   D+   A+ GTGKT ++++P+L 
Sbjct: 52  DFEDYCLKRDLLIGIFEKGFEKPSPIQEESIPVAVSGKDIIARAKNGTGKTGAYLIPLLQ 111

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           + +  +  V+     +L PTRELA Q +   ++ GK+  + V +  GG        +L  
Sbjct: 112 LTDPDKNVVQSI---VLVPTRELALQTSQICKELGKHMQINVMVTTGGTNLRDDIMRLND 168

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+ D   R    +NN ++LV+DEAD++L M    Y++ +  L+P  RQ L
Sbjct: 169 PVHVMVATPGRMFDLARRNIADLNNCKLLVLDEADKLLSMDSNEYLEGLIRLLPDRRQIL 228

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           ++SAT    +    +  L N   I +    +     ++       Q              
Sbjct: 229 MYSATFPVSVCSFKDRHLHNAFEINLMDDLTLKGITQYYAHVHERQKVHC---------- 278

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                   +     K V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 279 --------LNTLFAKRVELLAKKITQLGYSCFYIHAQMSQHDRNRVFHDFRRGECRNLVC 330

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  LV   D + +  IE
Sbjct: 331 TDLFTRGIDIQAVNVVINFDFPISSETYLHRIGRSGRFGHLGLAINLVTPNDRRSLYQIE 390

Query: 362 KLIEKKVDWLNGDLSS 377
           + +   +  +  ++ +
Sbjct: 391 EELATTIKAIPQNVDA 406


>gi|160944592|ref|ZP_02091819.1| hypothetical protein FAEPRAM212_02105 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443776|gb|EDP20780.1| hypothetical protein FAEPRAM212_02105 [Faecalibacterium prausnitzii
           M21/2]
          Length = 435

 Score =  148 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 117/366 (31%), Positives = 199/366 (54%), Gaps = 7/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M +++L  S  +  AV   G+ + T IQ KTIPL+L  HDV   A TGTGKT +F +P++
Sbjct: 41  MLYSELQCSEAIHKAVERMGFAEMTEIQEKTIPLMLAGHDVIAKAPTGTGKTCAFGIPVV 100

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             ++      + P+ +I+ PTRELA Q+A+                + G    E Q K+L
Sbjct: 101 EHIQP---ENKYPQAVIMAPTRELAQQIAEELTNLTYFMPEVQVACVYGGANMEKQAKRL 157

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  +++ TPGR++DH+    + ++++  +V+DEAD ML+MGF   +++I  ++   + 
Sbjct: 158 AEGCQIVVATPGRLMDHYKHHSIDISHVTQIVLDEADEMLNMGFYKDVRHIIEMMKARKA 217

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +FSAT++ E+  +   +  N + I   T     E+             +        +
Sbjct: 218 LSMFSATISREVMDIGWLYQHNAEEI---TVQPREESQPKITQYMLETSGRNKLSDLAQI 274

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  K  ++FC+ K N   L + L + GFSV  +HG++ Q+ R +I+  F++G + ++
Sbjct: 275 IIGEGYKRVMVFCDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQAFRDGKLAIL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  V N+DVP+  E+Y HRIGRTGRA + G ++     E+ K +  
Sbjct: 335 VATDVAARGIDVSDVDAVINYDVPSENEHYTHRIGRTGRAKKEGVSYLFYVPEEKKRVQE 394

Query: 360 IEKLIE 365
           + +L  
Sbjct: 395 LLRLTR 400


>gi|313159432|gb|EFR58795.1| putative DEAD-box ATP-dependent RNA helicase CshA [Alistipes sp.
           HGB5]
          Length = 653

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 134/410 (32%), Positives = 227/410 (55%), Gaps = 12/410 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           DF+ LGLS +++ AV   G+  PT IQ  TIP +L + +D+   +QTGTGKTA++ LP+L
Sbjct: 6   DFSALGLSEQMLTAVRAKGFETPTAIQKLTIPHLLTKTNDIIAQSQTGTGKTAAYGLPIL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE  R  V+     IL PTRELA Q A+    Y +   L++  + GG     Q ++L 
Sbjct: 66  QSLEPARGPVQAI---ILVPTRELALQAAEELLSYNREKRLSITAIYGGAAMSEQLRRLA 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+++ TPGR+ DH  RG L + N+  LV+DEAD ML+MGF+  ++ I S     R+ 
Sbjct: 123 KGVDIVVGTPGRVRDHIRRGTLKLENVRYLVLDEADEMLNMGFVEDVEEIMSHTSEERRV 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM + + ++S+ ++++ + + V     T +  E      +             + 
Sbjct: 183 LLFSATMPERIIRLSKTYMRDTEIVRVENKQLTTDLTEQ---IYFEVREADKFDALTRII 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +    GIIF   K         L  +G++   +HG++ Q  R KIL  F++ ++ ++V
Sbjct: 240 DVEPEFYGIIFARTKIGADETVSRLAARGYAAEVLHGDVSQAQREKILRKFRDRSVNILV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ ++ HV N+ +P  +E+Y+HRIGRTGRAG+ G A T V+  + + ++ +
Sbjct: 300 ATDVAARGIDVGNLTHVINYSLPQDSESYVHRIGRTGRAGKQGTAITFVSPSEFRGLNNL 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            + I+ ++        +L  P + +++ +     +   I +  +    R+
Sbjct: 360 MRDIKVEIKR-----ETLPSPQDIVEMKRLKIKDEMQEIVENESYDGYRE 404


>gi|308276378|gb|ADO26277.1| Putative Superfamily II DNA and RNA helicase [Corynebacterium
           pseudotuberculosis I19]
          Length = 450

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 143/448 (31%), Positives = 224/448 (50%), Gaps = 12/448 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLGL   +V  +   G   P PIQ   IP  L+  DV G   TG+GKT +F LPM+ 
Sbjct: 3   SFSDLGLPVSIVHVLNRQGITAPFPIQEAAIPDALKGRDVLGRGPTGSGKTFTFGLPMIA 62

Query: 62  I-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              + G +    PR LIL PTRELAAQV +  ++      L +  ++GG+          
Sbjct: 63  ALAKTGASLPGHPRGLILVPTRELAAQVRERLDEPAAALGLRILDVVGGVSINRHITAFA 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+L+ TPGR  D  N  KL ++ + I  +DEAD+M DMGF+P +  +  L P   Q 
Sbjct: 123 APVDILVATPGRAQDLVNNKKLFLDKVLITTLDEADQMADMGFLPQVLKLLELTPRDAQR 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++ K+ E F+ +P        ++  +T+ H  +    + S+   +L+    
Sbjct: 183 LLFSATLDGDVNKLVERFMHDPVTHSTAEVAAAVDTMTHYRLHVGDRDSRNDVVLR---- 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +   I+F   K  V      L + G +   IHG+ DQ +R   ++ F +G++ ++V
Sbjct: 239 IAGRIGKTIMFMRTKHGVDRQVKKLRRIGINAVGIHGDKDQNTRTNAITGFSDGSVPVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV  V + D P   + Y+HR GRT RAG  G   TLV +E I+ +D +
Sbjct: 299 ATDIAARGIDIGDVDLVVHVDPPAEHKAYLHRAGRTARAGSSGTVVTLVMEEQIQEVDTL 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
                   + L  ++S+ +P L  I  AQ        P         R+KK+ S++ S  
Sbjct: 359 LHKAGVNAESL--EVSANSPELVHITGAQKITGEPLPPFGAAQPQ-QRQKKSQSTKNSAT 415

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGN 448
             ++ ++    Q+   ++   +  FRG 
Sbjct: 416 RRRKPQR----QRTASKSRGSAASFRGK 439


>gi|164660112|ref|XP_001731179.1| hypothetical protein MGL_1362 [Malassezia globosa CBS 7966]
 gi|159105079|gb|EDP43965.1| hypothetical protein MGL_1362 [Malassezia globosa CBS 7966]
          Length = 638

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 149/481 (30%), Positives = 240/481 (49%), Gaps = 37/481 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  L L+  ++  +    + +PTPIQ +TIP+ L   D+   A TG+GKTA+F++P++ 
Sbjct: 78  DFTALQLNRALLRGLAALNFSRPTPIQARTIPIALAGKDIVAGAVTGSGKTAAFLIPIME 137

Query: 62  ILEKGRARVRMPRTLIL--EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L   +      ++ ++   PTRELA Q     +  GK  N+   L +GG+  + Q  +L
Sbjct: 138 RLSYRQRSADDAKSRVVVLCPTRELAIQCHSVAQALGKFMNVRFCLCVGGLSLKLQEAEL 197

Query: 120 ERGADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +   DV+I TPGR++DH        M ++EILV+DEADRML+ GF   +  I  L P  R
Sbjct: 198 KTRPDVIIATPGRLIDHVRNSASFGMEDVEILVMDEADRMLEDGFEDELNEIVRLCPKQR 257

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF-----------VATYAQ 227
           QT+LFSATMT+++ ++    L+ P R+ V+   STA  +   F            A    
Sbjct: 258 QTMLFSATMTEDVDQLVRLSLRTPVRLFVDPKRSTASKLTQEFVRVRAQSRLTGHARQQA 317

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             +  A +   L  +      IIF   KK    L       G S   +HG++ Q  R++ 
Sbjct: 318 EDQHRAAILVTLCMRTFRDQVIIFVRSKKLAHQLKILFGLLGLSAAELHGDLSQEQRLQS 377

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           LS F++G +  ++A+DLA+RG+DI  V  V N+D+P + E Y+HR+GRT RAGR G+A T
Sbjct: 378 LSLFRDGKVDFLLATDLASRGIDIRGVQTVINYDMPAQLEPYLHRVGRTARAGRQGRAVT 437

Query: 348 LVAKEDIKHIDAIEKLI-----------EKKVDWLNGDLSSLNPPLEKI----------D 386
           LV + D + +  + K              + V  L+  ++SL P +E+I           
Sbjct: 438 LVGEPDRRLLKTVLKRTPPEQVKHRLMPSEMVQKLSDTIASLKPEVEQILQEEKEERALR 497

Query: 387 IAQHNHARKNNPIPQKSTGFDRRKKN-YSSQKSHIPLKE-SEKISKLQQDIQENDADSLG 444
            A+    +  N +  +   + R  +  + S+K+    K+ S +    + D+ +      G
Sbjct: 498 QAEMEVQKGENMMAHQDEIYARPARTWFQSEKAKADAKQVSREQQNAKVDVSKARDRFAG 557

Query: 445 F 445
            
Sbjct: 558 L 558


>gi|326789718|ref|YP_004307539.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
 gi|326540482|gb|ADZ82341.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
           5427]
          Length = 592

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 126/372 (33%), Positives = 204/372 (54%), Gaps = 7/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L +S  ++ A  D G+ + TPIQ K IP++LQ +D+   A TGTGKT +F +P +  
Sbjct: 8   FNQLEVSEDIIRAAHDMGFEETTPIQGKAIPIILQGNDIIAQAPTGTGKTCAFGIPAIES 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    +V+    LIL PTREL  Q  +      K       L I  G   + Q   L++
Sbjct: 68  VDTTNEKVQ---VLILCPTRELVIQTTEELSALAKYKRGIRTLPIYGGQQIDRQIIALKK 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI+DH  RG L + +++++++DEAD ML+MGF   I  I   VP  RQ +
Sbjct: 125 RPQIIVGTPGRIMDHLRRGTLKLEHLKMIILDEADEMLNMGFREDIDVILESVPEERQFV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +  ++  +  NP  +          T+                 +   L  
Sbjct: 185 LFSATLAKAILDIANKYQNNPITVN---VVHKELTVPTVKQYYLEVRDSNKVEVLSRLID 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  K  ++FCN K+ V +LC  L+ +G+S  ++HG++ Q  R  ++S F+ G I +++A
Sbjct: 242 ANNFKLSVVFCNTKRRVDDLCRDLQARGYSAESLHGDMKQLQRDNVMSRFRNGLIDILIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  VFN+DVP+  E Y+HRIGRTGRA R G ++T  A +++  +  I+
Sbjct: 302 TDVAARGIDVDDVDAVFNYDVPSDEEYYVHRIGRTGRAQREGVSYTFAAGKELAKLRDIQ 361

Query: 362 KLIEKKVDWLNG 373
           +  + K+  +  
Sbjct: 362 RYTKSKIKLIKP 373


>gi|194745414|ref|XP_001955183.1| GF18634 [Drosophila ananassae]
 gi|190628220|gb|EDV43744.1| GF18634 [Drosophila ananassae]
          Length = 704

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 132/382 (34%), Positives = 208/382 (54%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF ++ L   V+  +   GY  PT IQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 267 DFTEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIV 326

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   +   R   P  L+L PTRELA Q+     ++G +  +    + GG P  +Q + L
Sbjct: 327 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGSQMRDL 386

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 387 QRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 446

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--- 236
           TL++SAT   E+++++E+FL N  +I + +   +A       V    ++SK+  L     
Sbjct: 447 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVEVCDEFSKEEKLKSLLS 506

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +  + +     IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G  
Sbjct: 507 DIYDTSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 566

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + K 
Sbjct: 567 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 626

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
             A+  ++ +    +N  L +L
Sbjct: 627 AKALVDVLREANQEINPALENL 648


>gi|119475746|ref|ZP_01616099.1| probable ATP-dependent RNA helicase [marine gamma proteobacterium
           HTCC2143]
 gi|119451949|gb|EAW33182.1| probable ATP-dependent RNA helicase [marine gamma proteobacterium
           HTCC2143]
          Length = 451

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 133/366 (36%), Positives = 203/366 (55%), Gaps = 2/366 (0%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
           ++L L  +++ A+   G+ + T +Q + IP  L+R D+   AQTG+GKTA+F+LP+L  +
Sbjct: 5   SELALHKQLLKALDKLGFSEATEVQAQAIPEALKRRDLMVSAQTGSGKTAAFLLPILHQI 64

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
                     R LIL PTRELA Q   NFE       +   L+IGG  F+ Q   L +  
Sbjct: 65  LTEEVSTSGTRVLILLPTRELALQTQKNFEMLAAFTYIKSGLIIGGEAFKHQVATLRKDP 124

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
           +VLI TPGR++DH  +G      +E+LV+DEADRMLDMGF   +  I S     RQ LLF
Sbjct: 125 EVLIATPGRLVDHIEKGTPDFRQLEVLVLDEADRMLDMGFAIDMNTIASSCNPERQNLLF 184

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SA++  E         ++P  I V +P    + I    V       K    L + L  ++
Sbjct: 185 SASLKHEGLGKISKSFRDPVAIAVGSPDHQHQDICQQLVLADTI--KHKEKLVEALIDEE 242

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +  ++FCN +     L H L  +   V  IHG+I Q  R ++++ F++G I ++VA+D
Sbjct: 243 QAQKTLVFCNTRVQCQQLSHLLRYKKMKVGYIHGDISQNDRKQVMNQFRQGGIAVLVATD 302

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARGLDI  V  V NF++    ++++HR+GRTGRAG  GKA TL+   +   + +IE+ 
Sbjct: 303 VAARGLDIKGVDLVVNFNIAQSGDDHLHRVGRTGRAGEQGKAITLIDSNEWNQMSSIERY 362

Query: 364 IEKKVD 369
           ++ + +
Sbjct: 363 LKFRFE 368


>gi|86570094|ref|NP_001033411.1| hypothetical protein F53H1.1 [Caenorhabditis elegans]
 gi|14574201|gb|AAK68386.1|AF045641_1 Hypothetical protein F53H1.1 [Caenorhabditis elegans]
          Length = 970

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 141/463 (30%), Positives = 223/463 (48%), Gaps = 14/463 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G++ K++  +    Y KPT IQ + IP ++   DV GIA+TG+GKT +F+LPM  
Sbjct: 305 TWAQCGVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFR 364

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P  +IL PTRELA Q      K+ K   L VA   GG+    Q   L
Sbjct: 365 HILDQPELEEGDGPIAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADL 424

Query: 120 ERGADVLICTPGRILD---HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  LV+DEADRM D GF P I  + + +  
Sbjct: 425 KRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRP 484

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +QT+LFSAT    ++ ++   L  P  I V   S     I    V       K   LL+
Sbjct: 485 DKQTVLFSATFPRHMEALARKVLDKPVEILVGGKSVVCSDITQNAVICAEHQ-KFLKLLE 543

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L    +   + +    Q+K    +   +     SV  +HG IDQ  R   +++FK G I
Sbjct: 544 LLGMYYEEGSSIVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVI 603

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIK 355
           +++VA+ +AARGLD+ ++  V N+D PN  E+Y+HR+GRTGRAGR G A+T V  E   K
Sbjct: 604 KVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEK 663

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
               I +  E        DL ++       +  +   A +   +     GF+     Y  
Sbjct: 664 MAGEICRAFETAGCKPPADLKAM------FERFKSEMAAEGKEVKLGGKGFEGSGYKYDE 717

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
            ++     + +++++L   ++    D       + + +  K R
Sbjct: 718 GEAEADANK-KRMTRLVHGMEAGGDDDDDLEEQLSSMIKTKRR 759


>gi|156552297|ref|XP_001600622.1| PREDICTED: similar to LD28101p [Nasonia vitripennis]
          Length = 782

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 202/370 (54%), Gaps = 2/370 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V+  +L  GY  PTPIQ KTIP+ L   DV  +A+TG+GKTA F++PM   
Sbjct: 40  FQSMGLSQSVIRGILKRGYKIPTPIQRKTIPIALDGRDVVAMARTGSGKTACFLIPMFEK 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  +A+    R LIL PTRELA Q     ++ G+   L  ++++GG   + Q   +   
Sbjct: 100 LKTRQAKTGA-RALILSPTRELALQTQRFIKEIGRFTGLKSSVILGGDSMDNQFSAIHGN 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR L       + + +IE ++ DEADR+ +MGF   I  I + +P  RQTLL
Sbjct: 159 PDIIVATPGRFLHICIEMDMNLKSIEFVIFDEADRLFEMGFGEQIHEIANRLPKNRQTLL 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L+NP  + ++  S   + +      T     K   L+  L Q  
Sbjct: 219 FSATLPKVLVEFATAGLRNPVLVRLDVESKLPDEL-KLCFITCRPEEKLAVLMCLLKQVI 277

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF     +V  +   L++ G     I+ N+D  +R    + F+ G ++++V +
Sbjct: 278 KPGAQTVIFAATMHHVEYIHQILDQAGILNTFIYSNLDPSARKINAAKFQNGKVKVLVVT 337

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP + +V NF+ P +++ +IHR+GR  RAGR G A+ +VA ++  ++  +  
Sbjct: 338 DVAARGIDIPHLDNVINFNFPAKSKLFIHRVGRCARAGRSGTAYNIVAPDEYAYLLDLHL 397

Query: 363 LIEKKVDWLN 372
            + +  + + 
Sbjct: 398 FLGRSFNIVP 407


>gi|241958758|ref|XP_002422098.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223645443|emb|CAX40099.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 440

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 132/422 (31%), Positives = 196/422 (46%), Gaps = 17/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLG++  +  ++       PT IQ   IP +L+ HD  G A+TG+GKT +F  PML
Sbjct: 1   MSFNDLGVARWLSESLDAMKIYTPTSIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T   +          LIL PTRELA Q+A+ F   G N N+ VA+++GG  F  Q   L+
Sbjct: 61  TRWSE---DPFGIFGLILTPTRELALQIAEQFAALGANMNIKVAVVVGGEDFVQQTLALQ 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILV------IDEADRMLDMGFIPYIQNITSLV 174
           R    +I TPGR+ DH         +    V        +       G            
Sbjct: 118 RKPHFVIATPGRLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFDVLPP 177

Query: 175 PFTRQTLLFSATMTDELQ-----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
              RQTLLF+AT+TD ++       +                    +           Y 
Sbjct: 178 SDKRQTLLFTATITDAVRALKEKPPTPGKPPVFMHEVETVDKVAIPSTLQISYVFVPSYV 237

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  L   L   Q      +IF N+      L   L K  F V ++H  + Q  R   L 
Sbjct: 238 KEAYLNSILHLEQFKDSTAVIFVNRTTTAEVLRRMLRKLDFRVASLHSEMPQSERTNSLH 297

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G  ++++A+D+A+RGLDIP V  V NFD+P   +++IHR+GRT RAGR G A +++
Sbjct: 298 RFKAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVSII 357

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            ++DI  I +IE+ I KK++ L  D++  N   E +  +  + A++ + +      F  R
Sbjct: 358 GEKDIDRIQSIEERINKKMELLE-DVNDDNVIKESL--SATSVAKRESLMEMDKENFGER 414

Query: 410 KK 411
           KK
Sbjct: 415 KK 416


>gi|242801276|ref|XP_002483729.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218717074|gb|EED16495.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 803

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 129/441 (29%), Positives = 206/441 (46%), Gaps = 46/441 (10%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + GL  +++  V   GY  PTPIQ   IP+ LQ  D+ G+A TG+GKTASF+LP+  
Sbjct: 364 SWEESGLPRRLLDLVKQVGYTDPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLFV 423

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                    E    +   P  +IL PTRELA Q+    +K+ K  N  V  ++GG   E 
Sbjct: 424 YISELPRLDEFEWRKNDGPYAIILAPTRELAQQIEIEAKKFSKPLNFNVVSIVGGHSLEE 483

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 484 QAYSLRDGAEIIIATPGRLVDCLERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 543

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY------ 228
           P T +          +             R  +   ++    +E        +       
Sbjct: 544 PVTNEKPDTEEAEDAQAMSQHVGGRDRRYRQTMMYTATMPSAVERIARKYLRRPAIVTIG 603

Query: 229 -------------------SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269
                               K+   L  +L S       I+F N K+N   +   +++ G
Sbjct: 604 NVGQAVDTVEQRVEFVAGEDKRKKRLADILMSGQFQPPIIVFVNIKRNCDAVAKDIKQMG 663

Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329
           FS   +HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++    E+Y
Sbjct: 664 FSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESY 723

Query: 330 IHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
            HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ
Sbjct: 724 THRIGRTGRAGKSGVAITFLGNEDADVMYDLKQML------MKSPISRVPEELRKHEAAQ 777

Query: 390 HNHARKNNPIPQKSTGFDRRK 410
                     P +  GF ++K
Sbjct: 778 SK--------PTRGGGFSKQK 790


>gi|313885882|ref|ZP_07819622.1| putative DEAD-box ATP-dependent RNA helicase CshA [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924637|gb|EFR35406.1| putative DEAD-box ATP-dependent RNA helicase CshA [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 553

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 202/374 (54%), Gaps = 7/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           M F  L LSP++  A  D G+ +P P+Q + IP +     D+  +++TG+GKTA++ LP+
Sbjct: 1   MTFDTLDLSPELRRATSDLGFSEPMPVQQEVIPYLSSHRGDLIALSKTGSGKTAAYGLPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKK 118
           L  + +   +   P  LIL PTRELA QV  +     K  ++   L + G    E Q ++
Sbjct: 61  LERIIQA--KGSAPCGLILTPTRELAIQVQSDLVALAKYTSVRQILALYGGASIEEQIRQ 118

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G  +++ TPGR+ D   R  + +  + ++V+DEAD MLDMGF   +Q I   VP   
Sbjct: 119 LAKGYHIIVATPGRLCDLLRRKAVKLRKVSVVVLDEADVMLDMGFQRDLQEILQAVPQQV 178

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +  LFSATM+ E++++++N++ +   +++   +   +          A  ++      + 
Sbjct: 179 EHWLFSATMSREVREIADNYISDAHEVQIGALN---KANADIKHLYVAVPARHKYAALKR 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +        GIIFC  +     +   L + G++   +HG++ Q  R  +++ F+   +QL
Sbjct: 236 VVDYYPNIYGIIFCRTRAETKEIAEWLIRDGYNADTLHGDLSQAQRDMVMNRFRIRNLQL 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ DV HV ++ +P   ++Y HR GRT RAG+ G +  +    D K I 
Sbjct: 296 LVATDVAARGLDVDDVTHVLHYGLPADPDSYTHRSGRTARAGKTGLSIAICHLRDSKQIR 355

Query: 359 AIEKLIEKKVDWLN 372
            IE+    +++ + 
Sbjct: 356 IIERHAGIRIEAMP 369


>gi|24372485|ref|NP_716527.1| ATP-dependent RNA helicase DbpA [Shewanella oneidensis MR-1]
 gi|24346478|gb|AAN53972.1|AE015534_11 ATP-dependent RNA helicase DbpA [Shewanella oneidensis MR-1]
          Length = 458

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 140/369 (37%), Positives = 213/369 (57%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L  +++  +   GY + TPIQ +++P +L   DV G  +TG+GKTA+F L +L
Sbjct: 1   MAFSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L+  R R++   TL+L PTRELA QVA       +  +    L +  G+P   Q   L
Sbjct: 61  NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH +R +L ++N+ +LV+DEADRML+MGF P +  I    P  RQ
Sbjct: 118 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +++Q +++  + NP  ++      T E              K      QLL
Sbjct: 178 TLLFSATFPEQIQSIAKQIMYNPVMVKAAV---THEKNTIEQHFYQLDDDKSRMQALQLL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ ++FCN K+    +   LE  GFSV A+HG+++QR R + L  F   +  ++
Sbjct: 235 LLEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  VFN+ V    E +IHRIGRTGRAG  G A+T    +D   I  
Sbjct: 295 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIAL 354

Query: 360 IEKLIEKKV 368
           +E+ +++++
Sbjct: 355 LEEYLDREI 363


>gi|14042692|dbj|BAB55355.1| unnamed protein product [Homo sapiens]
          Length = 622

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 193/389 (49%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 182 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 361

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 362 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKE 417

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 418 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L  +    +   L  L
Sbjct: 538 KACDESVLMDLKALQLEAKQKVPPVLQVL 566


>gi|19173435|ref|NP_597238.1| P68-LIKE PROTEIN (DEAD BOX FAMILY OF RNA HELICASES)
           [Encephalitozoon cuniculi GB-M1]
 gi|74664187|sp|Q8SRB2|DBP2_ENCCU RecName: Full=ATP-dependent RNA helicase DBP2
 gi|19171024|emb|CAD26414.1| P68-LIKE PROTEIN (DEAD BOX FAMILY OF RNA HELICASES)
           [Encephalitozoon cuniculi GB-M1]
          Length = 495

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 123/380 (32%), Positives = 204/380 (53%), Gaps = 5/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F + G S +VV ++++ G+ +PT IQ +  P+ L   D+ GIAQTG+GKT SF+LP   
Sbjct: 88  KFEEAGFSSEVVSSLVEKGFSEPTAIQGQGWPMALSGRDMVGIAQTGSGKTLSFILPALV 147

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               ++   R   P  L+L PTREL  Q+    +++   +NL    + GG   + Q + L
Sbjct: 148 HAKDQQPLRRGDGPIVLVLAPTRELVMQIKKVVDEFCGMFNLRSTAVYGGASSQPQIRAL 207

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA+V+I TPGR++D  ++G   ++ +  LV+DEADRMLDMGF P ++ I       RQ
Sbjct: 208 HEGAEVVIATPGRLIDLHDQGHAPLSRVTFLVLDEADRMLDMGFEPQLRKIIPKTNANRQ 267

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E++ ++E+++    ++ V        +     V   +   K+       +
Sbjct: 268 TLMWSATWPREVRGLAESYMNEYIQVVVGNEELKTNSKIKQIVEVCSGREKED--KLIGV 325

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    I+FCN K+   +L + L + G+   A+HG+  Q  R K+L +F+ G   ++
Sbjct: 326 LDNFKGDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPIL 385

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIKHID 358
           +A+++A RGLD+ DV  V NFD P   E+Y+HRIGRT R   + G + T     D  +  
Sbjct: 386 IATEVAGRGLDVNDVKLVINFDFPGSCEDYVHRIGRTARGNTKEGISHTFFTVGDKANAR 445

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + +++ +    +  DL  +
Sbjct: 446 ELIRMLREANQTVPSDLEDM 465


>gi|15595652|ref|NP_249146.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAO1]
 gi|107099439|ref|ZP_01363357.1| hypothetical protein PaerPA_01000451 [Pseudomonas aeruginosa PACS2]
 gi|254237315|ref|ZP_04930638.1| RNA helicase DbpA [Pseudomonas aeruginosa C3719]
 gi|9946315|gb|AAG03844.1|AE004483_2 RNA helicase DbpA [Pseudomonas aeruginosa PAO1]
 gi|126169246|gb|EAZ54757.1| RNA helicase DbpA [Pseudomonas aeruginosa C3719]
          Length = 458

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 143/404 (35%), Positives = 216/404 (53%), Gaps = 16/404 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LS  ++  +   GY + TPIQ +++PL+LQ HD+   A+TG+GKTA+F L +L+ 
Sbjct: 6   FSSLPLSADLLANLDSLGYREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLALLSP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L     R    + L+L PTRELA QVA    +  +  +    L +  G+P+  Q   LE 
Sbjct: 66  L---NPRYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI +H  +G L+++ +  LV+DEADRMLDMGF   I  I   +P  RQTL
Sbjct: 123 GAHVVVGTPGRIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPERRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D ++K+++ F     R        +           +    K+       L  
Sbjct: 183 LFSATYPDGIEKLAKTF----MRDPRQVRVESLHADSQIEQRFFEIDPKQRMDAVVRLLQ 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ + FC  ++    L  +L+ Q  S  A+HG+++QR R ++L+ F   +  ++VA
Sbjct: 239 HFRPQSCVAFCQTRQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++    E +IHRIGR+GRAG  G A +LVA  +     AIE
Sbjct: 299 TDVAARGLDIAALETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIE 358

Query: 362 KLIEKKVDW-----LNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
            L ++ + W     L      L PP+  + IA     RK+   P
Sbjct: 359 DLQKQPLAWYALGQLKASPEPLLPPMSTLCIA---GGRKDKVRP 399


>gi|242803584|ref|XP_002484204.1| DEAD box  RNA helicase (Hca4), putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218717549|gb|EED16970.1| DEAD box RNA helicase (Hca4), putative [Talaromyces stipitatus ATCC
           10500]
          Length = 817

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 122/460 (26%), Positives = 221/460 (48%), Gaps = 20/460 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L LS      +  + +   T IQ ++IP  L+  D+ G A+TG+GKT +F++P+L 
Sbjct: 50  SFSELPLSDPTSSGLTASHFKSLTDIQSRSIPYALKGRDILGAAKTGSGKTLAFLVPVLE 109

Query: 62  ILEKGRARVRMPRTLIL-EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L + +         I+  PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L 
Sbjct: 110 NLYRKKWTEYDGLGAIVLSPTRELAIQIFEVLRKVGRYHTFSAGLVIGGKSLKEEQERLG 169

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +       +L + N+++LV+DEADR++DMGF   +  I   +P TRQT
Sbjct: 170 RMNILVCTPGRMLQHLDQTAELDVYNLQMLVLDEADRIMDMGFQQTVDAIIEHLPKTRQT 229

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT T ++  ++   LQ+P+ + V+  +++A               +K         
Sbjct: 230 MLFSATQTKKVSDLARLSLQDPEYVAVHETAASATPSTLQQHYIITPLPEKL-DTLYSFI 288

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQL 298
             +     I+F +  K V  +  SL      +    +HG   Q  R+ I + F +    +
Sbjct: 289 RSNLKSKTIVFMSSGKQVRFVYESLRHLQPGIPLLHLHGRQKQGGRLDITTRFAQSKHAV 348

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + ++D+AARGLD P V  V   D P  A+ YIHR+GRT R  R+G+A   +   + + + 
Sbjct: 349 LFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERNGRAVLFLDPSEEEGM- 407

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +++L +KKV            P+E+I++         + +  ++  F   +  Y  QK+
Sbjct: 408 -LKRLEQKKV------------PIERINVKAKKQQSIKDQL--QNMCFKDPELKYLGQKA 452

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
            I   +S  + K ++  +  D     F  ++     P+ +
Sbjct: 453 FISYVKSIHVQKDKEVFKVKDLALDAFASSLGLPGAPRIK 492


>gi|77166040|ref|YP_344565.1| DEAD/DEAH box helicase-like [Nitrosococcus oceani ATCC 19707]
 gi|254436366|ref|ZP_05049872.1| DEAD/DEAH box helicase domain protein [Nitrosococcus oceani AFC27]
 gi|76884354|gb|ABA59035.1| DEAD/DEAH box helicase-like protein [Nitrosococcus oceani ATCC
           19707]
 gi|207088056|gb|EDZ65329.1| DEAD/DEAH box helicase domain protein [Nitrosococcus oceani AFC27]
          Length = 431

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 133/424 (31%), Positives = 218/424 (51%), Gaps = 5/424 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L L+  ++  +  AG+   TPIQ   +PL+L   DV G AQTGTGKTASF+L  +
Sbjct: 9   ISFDSLNLAEALIQGIQKAGFAICTPIQALALPLLLAGEDVAGQAQTGTGKTASFLLATM 68

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                E      + PR LI+ PTRELA QV+ + +  G+  NL    + GG  +  Q   
Sbjct: 69  QCLLREPSAGAGQQPRGLIVAPTRELALQVSKDAQFLGQYTNLKCVAVHGGANYRKQRHL 128

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE+G D+LI TPGR++D++ +  +    I+++V+DEADRM D+GFI  I+ I   +P   
Sbjct: 129 LEQGCDILIGTPGRLIDYYQQRIIGFKKIQVVVLDEADRMFDLGFIRDIRYILRRLPPPD 188

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           + L    + T  L+ +   +        +          +      +    +K +L    
Sbjct: 189 KRLGMLFSATLSLRVMELAYEYMNNPQLLRIEPQKVTVDKITERVYFPANEEKISL-LLA 247

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +   ++ I+F N K     +   LE  GF    +  ++ Q  R ++L+ F++    +
Sbjct: 248 LFKRLVPRHAIVFTNTKHVAEKVWGYLEGNGFKAALLSSDVPQGKRQRLLAAFQDRIYPI 307

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGL I  V HVFN+D+P   E+Y+HRIGRT RAG  G A +   ++    + 
Sbjct: 308 LVATDVAARGLHISTVTHVFNYDLPQDPEDYVHRIGRTARAGASGLAVSFACEDYAFSLP 367

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR--KNNPIPQKSTGFDRRKKNYSSQ 416
            IE+ I  KV   + +   L  P +++ ++  +  +  +  P P++     ++K+ YS  
Sbjct: 368 DIEEYIGHKVVPFSVEEEELLVPEQRVFVSHKDKKKSHRRAPHPRQKKKSFQKKETYSGG 427

Query: 417 KSHI 420
           K+H 
Sbjct: 428 KNHT 431


>gi|94500946|ref|ZP_01307471.1| putative ATP-dependent RNA helicase DbpA [Oceanobacter sp. RED65]
 gi|94426886|gb|EAT11869.1| putative ATP-dependent RNA helicase DbpA [Oceanobacter sp. RED65]
          Length = 466

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 145/403 (35%), Positives = 226/403 (56%), Gaps = 12/403 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P ++  + D GY +  PIQ +++P +++  DV G A+TG+GKTA+F L +L  
Sbjct: 10  FSSLKLDPALLQNLEDLGYQQMRPIQAQSLPAIIEGKDVIGQAKTGSGKTAAFALGLLHH 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+  R RV+    L+L PTRELA QVA    +  +  +    L +  G+PF  Q   LE 
Sbjct: 70  LDVKRFRVQ---HLVLCPTRELADQVAKEIRQLARAIHNIKVLTLCGGMPFGPQVGSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI +H  +  L + +I   V+DEADRMLDMGF   +++I + +P  RQTL
Sbjct: 127 GAHIVVGTPGRIEEHIRKNNLPLKDITGFVLDEADRMLDMGFQDSLESIVNALPKQRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + ++K++      P R+EV      ++      +    Q +K+      LL  
Sbjct: 187 LFSATYPENIEKLAAWVTNKPVRVEVQESDVHSQIK---QLFYRLQDNKQRMTALSLLLK 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++  ++ I+FCN K+    +   L  QGFS  A+HG+++QR R + L  F   +  +MVA
Sbjct: 244 KEKPESSIVFCNTKREAQEIADELRSQGFSAVALHGDLEQRQRDQTLVRFANKSASIMVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  V  VFN+ +    E ++HR+GRTGR  + GKAF+    ++   + A+E
Sbjct: 304 TDVAARGLDIESVDAVFNYHLARDPEVHVHRVGRTGRGDKKGKAFSFYTDKEGYKLVALE 363

Query: 362 KLI--EKKVDWLNGDLSSLNPPLEKIDIA--QHNHARKNNPIP 400
           + +  +     L  D S L+ P  K  +A  Q +  +K    P
Sbjct: 364 ETLSVDATAQKLP-DFSVLDKPAFKAPMATLQIDGGKKQKVRP 405


>gi|75832045|ref|NP_001028801.1| spliceosome RNA helicase DDX39B [Bos taurus]
 gi|122140442|sp|Q3T147|DX39B_BOVIN RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
           U2AF65-associated protein; AltName: Full=DEAD box
           protein UAP56
 gi|74353855|gb|AAI02132.1| HLA-B associated transcript 1 [Bos taurus]
 gi|296474278|gb|DAA16393.1| spliceosome RNA helicase BAT1 [Bos taurus]
          Length = 428

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 93/375 (24%), Positives = 164/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 47  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY  +  + V      I  + +  K    
Sbjct: 107 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCP 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L +    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 167 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  I V+  +         +        K   L        
Sbjct: 227 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL--LDV 284

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 285 LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 344

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V   FN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 345 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 404

Query: 362 KLIEKKVDWLNGDLS 376
              E  +  L  ++ 
Sbjct: 405 DRFEVNISELPDEID 419


>gi|167535963|ref|XP_001749654.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771802|gb|EDQ85463.1| predicted protein [Monosiga brevicollis MX1]
          Length = 400

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 118/372 (31%), Positives = 181/372 (48%), Gaps = 7/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D GL  +++  + + G+  P+P+Q + IP  L R D+   A+ GTGKT ++++P L 
Sbjct: 16  EFEDFGLKRELLLGIFEKGFENPSPVQEECIPNALMRRDILARAKNGTGKTGAYLIPTLQ 75

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++     +   + LIL PTRELA Q A   ++ GK+ NL +    GG        +L +
Sbjct: 76  LVDPA---LACIQALILVPTRELALQTASIAKELGKHLNLEIMTTTGGTNTRDDILRLGQ 132

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ T GRILD   RG   M    ILV DEAD++L    +  +Q I S +P  RQT+
Sbjct: 133 TVHVVVATGGRILDLIERGVAQMARCNILVFDEADKLLSEDSLDTVQKIISHLPEKRQTM 192

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT    +Q     F +   +           T++           K        L  
Sbjct: 193 LLSATYPVAVQG----FTKRYLKNPHVINLMETLTLKGVTQFYAFLEEKDKVRCLNTLFG 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFC+    V  L   + K G+S   IH  ++Q  R  +   F++G  + +V 
Sbjct: 249 KLQINQSIIFCSSHSRVELLAKKITKLGYSCLYIHSRMEQSHRNTVFDAFRKGKSRHLVC 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  LV   + + +  IE
Sbjct: 309 TDLFTRGIDIQAVNVVVNFDFPREAETYLHRIGRSGRYGHLGLAINLVTAGNREALLRIE 368

Query: 362 KLIEKKVDWLNG 373
           + +   +  +  
Sbjct: 369 RELGTAIAPMPS 380


>gi|91773889|ref|YP_566581.1| DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM
           6242]
 gi|9581858|gb|AAF89099.1|AF199442_1 DEAD-box RNA helicase [Methanococcoides burtonii]
 gi|91712904|gb|ABE52831.1| Dead box RNA helicase [Methanococcoides burtonii DSM 6242]
          Length = 522

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 144/417 (34%), Positives = 217/417 (52%), Gaps = 18/417 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+   ++ ++ D  + +PT IQ   IPL+L+  D+ G A TG+GKT +F   ++ 
Sbjct: 3   SFKKLGIEDAILRSIEDKKFEEPTEIQKMAIPLILEGKDIIGGAATGSGKTLAFGCGIIQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +EKG       R L+L PTRELA QV ++ +++ ++  L VA + GG+    Q  +   
Sbjct: 63  KIEKG----NGIRALVLTPTRELAEQVQNSLKEFSRHKQLRVAPIYGGVAINPQI-RQLE 117

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            ADV++ TPGR+LDH  RG + + ++EILV+DEADRMLDMGFI  ++ I    P  RQT+
Sbjct: 118 RADVVVATPGRLLDHIERGTIDLGDVEILVLDEADRMLDMGFIDDVEEIIDECPSDRQTM 177

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT++ ++Q +S  ++ NP ++       + +              K    L   L  
Sbjct: 178 MFSATVSKDIQYLSSKYMNNPSKVFAKAYVDSDKL----KQVYIDVPKKMKFSLLVHLLK 233

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     ++FCN + NV  +  +L K      AIHG   Q  R   LS F       +V 
Sbjct: 234 SEKSGLVMVFCNTRSNVDFVQKNLRKNDIDAIAIHGGHTQAKRKSTLSKFHSSNAHALVC 293

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP V HV+NFD+P+    Y+HRIGRT RAGR GK   +VA  D      + 
Sbjct: 294 TDVAARGLDIPHVSHVYNFDIPDDPSEYVHRIGRTARAGREGKVINVVADVDKGGFTRLS 353

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           K+          +   L P  E++ I   +   +    P +    DR+      +KS
Sbjct: 354 KMHRN----FKIEREDL-PEFERVLIKSEDSGGR----PTRGRREDRKGGRREDRKS 401


>gi|171684483|ref|XP_001907183.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942202|emb|CAP67854.1| unnamed protein product [Podospora anserina S mat+]
          Length = 433

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 89/375 (23%), Positives = 151/375 (40%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q  TIP  +   D+   A++G GKTA FVL  L  
Sbjct: 51  FRDFLLKPELLRAIADCGFEHPSEVQQTTIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQ 110

Query: 63  LEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +E   G   V +         +        +         +           E    K  
Sbjct: 111 VEPVAGECSVLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEILKNKDT 170

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++           ++   L +    ++ +    +  +     +Q I    P  +Q 
Sbjct: 171 HPHIIVGTPGRLNALVRDKHLRLGSVRMFVLDECDKMLDQIDMRRDVQEIFRATPQQKQV 230

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++DE++ +   F+QNP    V+  +         +     +  K   L +    
Sbjct: 231 MMFSATLSDEIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYLALEEREKNRKLNEL--L 288

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF         L   L +  F   A+H  + Q  R+K    FKE   ++ V
Sbjct: 289 DDLQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICV 348

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+  RG+DI  +    N+D+P  A++Y+HR+GR GR G  G A + V  E D + + A
Sbjct: 349 ATDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRFGTKGLAISFVTTEQDKEVLQA 408

Query: 360 IEKLIEKKVDWLNGD 374
           IEK  E  +     +
Sbjct: 409 IEKRFEVALPEFPKE 423


>gi|90408198|ref|ZP_01216366.1| putative ATP-dependent RNA helicase DbpA [Psychromonas sp. CNPT3]
 gi|90310728|gb|EAS38845.1| putative ATP-dependent RNA helicase DbpA [Psychromonas sp. CNPT3]
          Length = 462

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 141/409 (34%), Positives = 226/409 (55%), Gaps = 10/409 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L L+  ++  +    Y + T IQ +++P +L   DV    +TG+GKTA+F L +L
Sbjct: 4   LSFDQLALNSALLHNLKSLEYTQMTEIQAQSLPHILAGKDVIAQGKTGSGKTAAFALGLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L   R R++   +LIL PTRELA QV+    +  +  +    L +  G PF  Q   L
Sbjct: 64  QKLNVKRFRIQ---SLILCPTRELADQVSSEIRRLARGIHNIKVLTLCGGAPFGPQIGSL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI DH  +  L ++ + +LV+DEADRMLDMGF+  I++I    P +RQ
Sbjct: 121 EHGAHIIVGTPGRIQDHLRKQTLCLDEVSMLVLDEADRMLDMGFVDAIEDIIEQAPKSRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  D++Q++S N L++P  I+V       +           + +++  L  +LL
Sbjct: 181 TLLFSATFPDQIQQISRNILRDPVSIKVEA---MHDDNTISQYFYLVRSAEERMLALRLL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q    + ++FCN K+ V  +   L  +GFS  A+HG++DQ+ R + L  F   +  ++
Sbjct: 238 ILQYQPTSAVVFCNTKREVQEVAEELNNRGFSALALHGDLDQKDRDQALIRFSNRSCSIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++  VFN+++ +  E ++HRIGRTGRAG  G AF+  + +D   I  
Sbjct: 298 VATDVAARGLDIENLSAVFNYNLAHDQEIHVHRIGRTGRAGSKGMAFSFYSAKDEHRIHL 357

Query: 360 IEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           +E L+++ +   +     +  L P    +   +    +K    P    G
Sbjct: 358 LEDLLDRNIQAQELPEASVLELQPQPSAMITLRIEGGKKQKIRPGDIVG 406


>gi|5901872|gb|AAD55444.1|AF181659_1 BcDNA.GM05306 [Drosophila melanogaster]
          Length = 641

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 146/454 (32%), Positives = 236/454 (51%), Gaps = 14/454 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP + 
Sbjct: 158 SFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLE 217

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L +      + R L+L PTREL AQV    ++  +   + V L IGG+  +AQ   L 
Sbjct: 218 RLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLR 277

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  D++I TPGR++DH         ++IE+L++DEADRMLD  F   ++ I +    TRQ
Sbjct: 278 QNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQ 337

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM+++++ ++   L  P ++ VN     A  +   F+            +   L
Sbjct: 338 TMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASL 397

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + ++F   KK    L   L   G     +HGN+ Q+ R++ L  FKE  I ++
Sbjct: 398 ICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVL 457

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  
Sbjct: 458 IATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKD 517

Query: 360 IEKLIEKK----------VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           I K  E            ++     L+SL P ++ I + +    R+     Q+ +  +R+
Sbjct: 518 IIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNI-LDEEQAERQLAKTEQQLSKTERK 576

Query: 410 KKNYSSQKS-HIPLKESEKISKLQQDIQENDADS 442
               ++++      K+  +  K +  +   D D 
Sbjct: 577 LLGQTNERRGWFQTKQQREAEKDRLALTTGDEDK 610


>gi|21356161|ref|NP_651970.1| Rs1 [Drosophila melanogaster]
 gi|7304081|gb|AAF59119.1| Rs1 [Drosophila melanogaster]
 gi|28626484|gb|AAO49161.1| LD15481p [Drosophila melanogaster]
          Length = 782

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 146/454 (32%), Positives = 236/454 (51%), Gaps = 14/454 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP + 
Sbjct: 158 SFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLE 217

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L +      + R L+L PTREL AQV    ++  +   + V L IGG+  +AQ   L 
Sbjct: 218 RLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLR 277

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  D++I TPGR++DH         ++IE+L++DEADRMLD  F   ++ I +    TRQ
Sbjct: 278 QNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQ 337

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM+++++ ++   L  P ++ VN     A  +   F+            +   L
Sbjct: 338 TMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASL 397

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + ++F   KK    L   L   G     +HGN+ Q+ R++ L  FKE  I ++
Sbjct: 398 ICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVL 457

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  
Sbjct: 458 IATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKD 517

Query: 360 IEKLIEKK----------VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           I K  E            ++     L+SL P ++ I + +    R+     Q+ +  +R+
Sbjct: 518 IIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNI-LDEEQAERQLAKTEQQLSKTERK 576

Query: 410 KKNYSSQKS-HIPLKESEKISKLQQDIQENDADS 442
               ++++      K+  +  K +  +   D D 
Sbjct: 577 LLGQTNERRGWFQTKQQREAEKDRLALTTGDEDK 610


>gi|39939200|ref|NP_950966.1| superfamily II DNA/RNA helicase [Onion yellows phytoplasma OY-M]
 gi|39722309|dbj|BAD04799.1| superfamily II DNA and RNA helicase [Onion yellows phytoplasma
           OY-M]
          Length = 552

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 136/408 (33%), Positives = 235/408 (57%), Gaps = 13/408 (3%)

Query: 1   MD--FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           M+  F  L +  +   A+ +  ++  TPIQ   IP +++ HDV G AQTGTGKT +F +P
Sbjct: 1   MNTLFEQLPILEQTKKALKELNFIDATPIQALVIPEIIKGHDVIGQAQTGTGKTFAFGIP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNK 117
           ++  +E    +++  ++LIL PTREL  QV +  +K  + Y  + +A++ GG  +  Q +
Sbjct: 61  IIEKIEP---KIQKTQSLILCPTRELTLQVYEELKKLLRFYQEIRIAVVYGGESYTKQFR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE    ++I TPGR +DH  RGK+ ++ ++IL +DEAD ML MGF   ++ I   +P  
Sbjct: 118 ALEAKPHLIIATPGRAIDHLERGKIDLSALKILTLDEADEMLKMGFQEALETILKKIPEE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT+   ++K++  + ++ K ++V   +     IE  +         K  +   
Sbjct: 178 RQTVLFSATLPPFIKKIASKYQKDTKILQVPVKNIAVNAIEQNYFLVKEVDKAKLLVRLL 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                    + I+F N KK+V  +   L+ +GF   A+HG++ Q  R  +++NF++G I+
Sbjct: 238 ---DLKKDYSAILFANTKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIK 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARGLDI D+  V N+D+P+  E Y+HRIGRTGRAG+ G A++L++   +  +
Sbjct: 295 ILIATDVAARGLDISDIKMVINYDLPHEDEVYVHRIGRTGRAGKKGLAYSLISPRKVSQL 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
             +E  +++K+  L  D+ S+     K+  A+    +  N I + +  
Sbjct: 355 KKLEYYLKEKITLL--DIPSVQSI--KLQNAKDLEKKLLNIIEKNNED 398


>gi|320158479|ref|YP_004190857.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus MO6-24/O]
 gi|319933792|gb|ADV88655.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus MO6-24/O]
          Length = 459

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 137/375 (36%), Positives = 219/375 (58%), Gaps = 9/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P+++  +   GY + TPIQ +++PLVL   DV G  +TG+GKTA+F L +L+ 
Sbjct: 5   FNTLSLKPELLSTLDTLGYTEMTPIQAQSLPLVLAGKDVIGQGKTGSGKTATFSLGLLSN 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA       +  +    L +  G+P   Q   LE 
Sbjct: 65  LNVSRFRVQ---SLVLCPTRELADQVATEIRTLARGIHNIKVLTLCGGMPMGPQILSLEH 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +L+ TPGRILDH ++G++ +  +  LV+DEADRML+MGF   I  I    P  RQTL
Sbjct: 122 GAHILVGTPGRILDHLSKGRIDLAELNTLVLDEADRMLEMGFQDAIDAIIDAAPTQRQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  ++++ ++   +QNP+ ++V +   T +           + +++     + L  
Sbjct: 182 LFSATFPEQIETIASKVMQNPEMVKVES---THQKSTIEQRFYQLESTEERDNALEALLL 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ ++FCN KK V N+   L  + FSV  +HG+++QR R + L+ F   +I ++VA
Sbjct: 239 THRPESTVVFCNTKKEVQNVTDELNHRRFSVIELHGDMEQRERERALTMFANKSISILVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ ++  V NF++    E ++HRIGRTGRAG  G A +  +++++  ++ IE
Sbjct: 299 TDVAARGLDVDNLDAVINFELSRDPEVHVHRIGRTGRAGAKGIAISFFSEKELYRVERIE 358

Query: 362 KLIEKKVDWLNGDLS 376
           + +   +D     L 
Sbjct: 359 EYMG--IDVHPAKLP 371


>gi|302758194|ref|XP_002962520.1| hypothetical protein SELMODRAFT_438217 [Selaginella moellendorffii]
 gi|300169381|gb|EFJ35983.1| hypothetical protein SELMODRAFT_438217 [Selaginella moellendorffii]
          Length = 821

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 126/380 (33%), Positives = 218/380 (57%), Gaps = 3/380 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLSP +  A+   GY  PTPIQ KT+PL+L  +DV  +A+TG+GKTA+F++PML  
Sbjct: 55  FESLGLSPSIYQAIRKKGYSVPTPIQRKTLPLILAGNDVVAMARTGSGKTAAFLIPMLEK 114

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +    R LIL PTRELA Q     ++ G+N +L + +L+GG   E Q ++L + 
Sbjct: 115 LRAHSPKPGA-RALILSPTRELALQTFKFCKELGRNTDLRITVLVGGDSMETQFEQLSKN 173

Query: 123 ADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D+LI TPGR++ H      + + ++E +V DEADR+ +MGF   ++ I + +   RQTL
Sbjct: 174 PDILIATPGRLMHHLSEVEGMSLKSVEYVVFDEADRLFEMGFAEQLRQILTQLHELRQTL 233

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L   ++  L++P  + ++T +  +  +      T  +  K   L+  L + 
Sbjct: 234 LFSATLPRLLADFAKAGLKDPLTVRLDTETKISPDL-KLAFFTMRKEEKLACLVHLLREV 292

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  ++F + K +V  L   L+ +G  +  ++G +DQ +R   ++ F+     +++ 
Sbjct: 293 VSSEQQTVVFVSTKHHVEFLFEVLKSEGIDLAVVYGAMDQTARKINVAKFRARKTMILLV 352

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP + +V NFD P + + ++HR+GR  RAGR G A++ +  +++ ++  + 
Sbjct: 353 TDVAARGIDIPLLDNVVNFDFPAKPKLFVHRVGRAARAGRTGTAYSFLTSDELPYLLDLH 412

Query: 362 KLIEKKVDWLNGDLSSLNPP 381
             + K V     +   ++ P
Sbjct: 413 LFLSKPVRPAPTEEDIVSSP 432


>gi|85091492|ref|XP_958928.1| ATP-dependent RNA helicase DDX18 [Neurospora crassa OR74A]
 gi|74696328|sp|Q7S2N9|HAS1_NEUCR RecName: Full=ATP-dependent RNA helicase has-1
 gi|28920320|gb|EAA29692.1| ATP-dependent RNA helicase DDX18 [Neurospora crassa OR74A]
          Length = 578

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 119/390 (30%), Positives = 196/390 (50%), Gaps = 7/390 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF++L LS K + A+ + G+ K T IQ + IP +L   DV G A+TG+GKT +F++P + 
Sbjct: 108 DFSELNLSDKTMKAIAEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 167

Query: 62  ILEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + R     I+  PTRELA Q+     +  KN++ T  ++IGG    A+ +KL 
Sbjct: 168 MLSSLRFKPRNGTGAIVVTPTRELALQIFGVARELMKNHSQTYGVVIGGANRRAEAEKLG 227

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G ++LI TPGR+LDH      +  N+  L+IDEADR+L++GF   ++ I  ++P   + 
Sbjct: 228 KGVNLLIATPGRLLDHLQNTPFVFKNMRSLIIDEADRILEIGFEDEMRQIIKILPKEDRQ 287

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSAT T +++ ++   L+               T+E          + K  LL    
Sbjct: 288 TMLFSATQTTKVEDLARISLRPGPLYVNVDEEKQFSTVEGLDQGYVVVDADKRFLLLFSF 347

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   K  I+F +   +V      L+     V  +HG   Q+ R      F       +
Sbjct: 348 LKKMQKKKVIVFFSSCNSVKYYSELLQYIDLQVLDLHGKQKQQKRTNTFFEFCNAKQGTL 407

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHID 358
           + +D+AARGLDIP V  +  FD P+   +YIHR+GRT R     G++   +   ++  + 
Sbjct: 408 ICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGNNTKGRSLLFLQPNELGFLA 467

Query: 359 AIEKLIEKKV---DWLNGDLSSLNPPLEKI 385
            + K  +  V   D+    + ++   LEK+
Sbjct: 468 HL-KAAKVPVVEYDFPKSKILNVQSQLEKL 496


>gi|116054184|ref|YP_788628.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254243551|ref|ZP_04936873.1| RNA helicase DbpA [Pseudomonas aeruginosa 2192]
 gi|296386953|ref|ZP_06876452.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAb1]
 gi|313111919|ref|ZP_07797709.1| RNA helicase DbpA [Pseudomonas aeruginosa 39016]
 gi|115589405|gb|ABJ15420.1| RNA helicase DbpA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126196929|gb|EAZ60992.1| RNA helicase DbpA [Pseudomonas aeruginosa 2192]
 gi|310884211|gb|EFQ42805.1| RNA helicase DbpA [Pseudomonas aeruginosa 39016]
          Length = 458

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 143/404 (35%), Positives = 216/404 (53%), Gaps = 16/404 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LS  ++  +   GY + TPIQ +++PL+LQ HD+   A+TG+GKTA+F L +L+ 
Sbjct: 6   FSSLPLSADLLANLDSLGYREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLALLSP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L     R    + L+L PTRELA QVA    +  +  +    L +  G+P+  Q   LE 
Sbjct: 66  L---NPRYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI +H  +G L+++ +  LV+DEADRMLDMGF   I  I   +P  RQTL
Sbjct: 123 GAHVVVGTPGRIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPERRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D ++K+++ F     R        +           +    K+       L  
Sbjct: 183 LFSATYPDGIEKLAKTF----MRDPRQVKVESLHADSQIEQRFFEIDPKQRMDAVVRLLQ 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ + FC  ++    L  +L+ Q  S  A+HG+++QR R ++L+ F   +  ++VA
Sbjct: 239 HFRPQSCVAFCQTRQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++    E +IHRIGR+GRAG  G A +LVA  +     AIE
Sbjct: 299 TDVAARGLDIAALETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIE 358

Query: 362 KLIEKKVDW-----LNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
            L ++ + W     L      L PP+  + IA     RK+   P
Sbjct: 359 DLQKQPLAWYALGQLKASPEPLLPPMSTLCIA---GGRKDKVRP 399


>gi|327351907|gb|EGE80764.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
            dermatitidis ATCC 18188]
          Length = 1205

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 130/438 (29%), Positives = 208/438 (47%), Gaps = 18/438 (4%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
             ++  GL  + +  +    Y  PT IQ + IP ++   DV G+A+TG+GKT +F+LPM  
Sbjct: 573  KWSQCGLGVQTLDVIRKLNYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFR 632

Query: 62   ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +   R    +  P  LI+ PTRELA Q+    + + K  +L      GG P + Q  +L
Sbjct: 633  HIMDQRPLENMEGPIGLIMTPTRELATQIHKECKPFLKALSLRAVCAYGGAPIKDQIAEL 692

Query: 120  ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +RGA++++CTPGR++D           +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 693  KRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRILGNVRP 752

Query: 177  TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC---A 233
             RQT+LFSAT    ++ ++   L  P  I V   S  A  I                   
Sbjct: 753  QRQTVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAPEITQVVEVRNEDTKFVRLLAL 812

Query: 234  LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L       ++     +IF ++++    L   L  +G+   +IHG  DQ  R   + +FK 
Sbjct: 813  LGDLYADDKNEDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIDDFKA 872

Query: 294  GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 873  GVFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 932

Query: 354  IKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             ++   I K +++    +   +  L N  +EK+   +   +          +GF  +   
Sbjct: 933  ERYSVDISKALKQSGQPVPEPVQKLVNSFIEKVKAGKEKAS---------GSGFGGKGLE 983

Query: 413  YSSQKSHIPLKESEKISK 430
               Q+         K  K
Sbjct: 984  RLDQERDAARNRERKTYK 1001


>gi|239613405|gb|EEQ90392.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
           dermatitidis ER-3]
          Length = 1197

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 130/438 (29%), Positives = 208/438 (47%), Gaps = 18/438 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL  + +  +    Y  PT IQ + IP ++   DV G+A+TG+GKT +F+LPM  
Sbjct: 565 KWSQCGLGVQTLDVIRKLNYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFR 624

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R    +  P  LI+ PTRELA Q+    + + K  +L      GG P + Q  +L
Sbjct: 625 HIMDQRPLENMEGPIGLIMTPTRELATQIHKECKPFLKALSLRAVCAYGGAPIKDQIAEL 684

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D           +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 685 KRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRILGNVRP 744

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC---A 233
            RQT+LFSAT    ++ ++   L  P  I V   S  A  I                   
Sbjct: 745 QRQTVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAPEITQVVEVRNEDTKFVRLLAL 804

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L       ++     +IF ++++    L   L  +G+   +IHG  DQ  R   + +FK 
Sbjct: 805 LGDLYADDKNEDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIDDFKA 864

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 865 GVFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 924

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            ++   I K +++    +   +  L N  +EK+   +   +          +GF  +   
Sbjct: 925 ERYSVDISKALKQSGQPVPEPVQKLVNSFIEKVKAGKEKAS---------GSGFGGKGLE 975

Query: 413 YSSQKSHIPLKESEKISK 430
              Q+         K  K
Sbjct: 976 RLDQERDAARNRERKTYK 993


>gi|261194749|ref|XP_002623779.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
           dermatitidis SLH14081]
 gi|239588317|gb|EEQ70960.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
           dermatitidis SLH14081]
          Length = 1197

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 130/438 (29%), Positives = 208/438 (47%), Gaps = 18/438 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL  + +  +    Y  PT IQ + IP ++   DV G+A+TG+GKT +F+LPM  
Sbjct: 565 KWSQCGLGVQTLDVIRKLNYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFR 624

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R    +  P  LI+ PTRELA Q+    + + K  +L      GG P + Q  +L
Sbjct: 625 HIMDQRPLENMEGPIGLIMTPTRELATQIHKECKPFLKALSLRAVCAYGGAPIKDQIAEL 684

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D           +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 685 KRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRILGNVRP 744

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC---A 233
            RQT+LFSAT    ++ ++   L  P  I V   S  A  I                   
Sbjct: 745 QRQTVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAPEITQVVEVRNEDTKFVRLLAL 804

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L       ++     +IF ++++    L   L  +G+   +IHG  DQ  R   + +FK 
Sbjct: 805 LGDLYADDKNEDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIDDFKA 864

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 865 GVFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 924

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            ++   I K +++    +   +  L N  +EK+   +   +          +GF  +   
Sbjct: 925 ERYSVDISKALKQSGQPVPEPVQKLVNSFIEKVKAGKEKAS---------GSGFGGKGLE 975

Query: 413 YSSQKSHIPLKESEKISK 430
              Q+         K  K
Sbjct: 976 RLDQERDAARNRERKTYK 993


>gi|255553305|ref|XP_002517695.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223543327|gb|EEF44859.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 585

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 128/390 (32%), Positives = 203/390 (52%), Gaps = 16/390 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F D+     ++  +   G V+PTPIQI+ +P++L   D+ GIA TG+GKT +FVLPM  
Sbjct: 140 NFQDMRFPEPILKTLKAKGIVQPTPIQIQGLPVILSGRDMIGIAFTGSGKTLAFVLPMIT 199

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
                 +    A    P  LI+ P+RELA Q  +  E++           L   L +GG+
Sbjct: 200 IAFQEEIMMPIAPREGPFGLIICPSRELARQTYEVVEQFLIPTRRAGYPELRALLCVGGV 259

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + +++G  +++ TPGR+ D   + K+ ++N   L +DEADR++D+GF   I+ I
Sbjct: 260 DMRSQLEVVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREI 319

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V    S A       +       +
Sbjct: 320 FSYFKAQRQTLLFSATMPTKVQN----FAKSALVKPVIVNVSRAGAANLDVIQEIEYVKQ 375

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +      L   + T    +IFC  K +V  +   L  +G  V AIHG  DQ  R   +S+
Sbjct: 376 EDKTAYLLKCLEKTPPQVLIFCESKADVDKIHEYLLLKGVEVVAIHGGKDQEEREYAISS 435

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   +++A+D+ ++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 436 FKSGKKDVLIATDVVSKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 495

Query: 351 KEDIK-HIDAIEKLIEKKVDWLNGDLSSLN 379
           K   +  +  ++ L+++    +   L  + 
Sbjct: 496 KNQSETTLLDLKHLLQEAKQKIPPVLVEVK 525


>gi|261855960|ref|YP_003263243.1| DEAD/DEAH box helicase [Halothiobacillus neapolitanus c2]
 gi|261836429|gb|ACX96196.1| DEAD/DEAH box helicase domain protein [Halothiobacillus
           neapolitanus c2]
          Length = 469

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 170/451 (37%), Positives = 246/451 (54%), Gaps = 15/451 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+LGL P+++ A+   GY  PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFAELGLMPELLTALDAVGYTSPTPIQREAIPIVLSGRDLLAAAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGRARVRMPRTLILE----PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L         P+  I      PTRELA+QV ++ ++YG+   LT  ++ GG+    Q 
Sbjct: 61  QRLATTPVLHPAPKHRIRALVLTPTRELASQVEESVKQYGQKLKLTSMVIFGGVNINPQR 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L+R  D+L+ TPGR+LDH  +G + +  +EILV+DEADRMLDMGFI  I+ + +L+P 
Sbjct: 121 DRLQRKLDILVATPGRLLDHVGQGNVDLGGVEILVLDEADRMLDMGFIRDIKRVLALLPK 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT   E++  ++N L NP ++EV    +TAE +E           K      
Sbjct: 181 QRQNLLFSATFAPEIKTFAQNLLDNPAKVEVAPQVTTAERVEQRIYPVDRDAKKAL---L 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q L         ++F   K     L   L+K G    AIH N  Q +R K L  FK G +
Sbjct: 238 QQLIVDGNWNQVLVFTRTKHGANRLAEQLDKDGIPAMAIHSNKSQSAREKALGAFKAGKL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+AARG+DI  + HV N+++PN  E+Y+HRIGRTGRAG  G+A +LV  ++ K 
Sbjct: 298 RVLVATDIAARGIDIDALPHVVNYELPNVPEDYVHRIGRTGRAGAGGEAVSLVCVDEHKL 357

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  IE+ I +K++ +      + P  E    A+    RK     Q    F  R       
Sbjct: 358 LADIERTIRQKLERV------IVPGFEPDPNARPEPLRKPQAARQPRRDFPPRSAQGHGG 411

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRG 447
           + H    ++ + +  Q+D Q   A S     
Sbjct: 412 QGHNA--QAPRSAGSQRDGQPRSAGSAAAGN 440


>gi|313891630|ref|ZP_07825237.1| putative DEAD-box ATP-dependent RNA helicase CshA [Dialister
           microaerophilus UPII 345-E]
 gi|329122052|ref|ZP_08250660.1| ATP-dependent RNA helicase DeaD [Dialister micraerophilus DSM
           19965]
 gi|313119908|gb|EFR43093.1| putative DEAD-box ATP-dependent RNA helicase CshA [Dialister
           microaerophilus UPII 345-E]
 gi|327466859|gb|EGF12375.1| ATP-dependent RNA helicase DeaD [Dialister micraerophilus DSM
           19965]
          Length = 416

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 121/422 (28%), Positives = 205/422 (48%), Gaps = 11/422 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M  F  LG+ P++   +   G + P PIQ + IP + +  ++ G AQTGTGKT +++LP+
Sbjct: 1   MSGFVSLGIIPEISEYLKKRGIINPMPIQKEVIPAIFKGRNIIGRAQTGTGKTLAYLLPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  ++K        + +I+ PTREL+ Q+ D    + K  N+    +IGG   E Q +KL
Sbjct: 61  VQRIKK---ESSSTQVIIMAPTRELSRQIYDVLSDFSKLLNVDSVGVIGGRTIENQIQKL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +R   +++ TPGR++DH  +  + +  ++ +V+DEAD+ML  GF   I+ +  + P  RQ
Sbjct: 118 KRNPHIIVGTPGRLIDHIRKNTIDLTQVKTVVLDEADQMLAAGFREDIEILIDMTPKKRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+     +  + + S+   +   +  +    S  E         Y         L    
Sbjct: 178 ILML----SATITEESKKLARKYVKAPLIADVSEKEVASTVEQRIYETTEAGKLKLLVKH 233

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI-HGNIDQRSRMKILSNFKEGTIQL 298
             +      ++FCN ++    L   + +    V    HG++ Q  R  ++  F +  IQ+
Sbjct: 234 LKEMNPYMAVVFCNTREGAYELAGEVYRATHMVVDQLHGDMTQGQRNHVIRQFSKAAIQV 293

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASD+AARGLD+  V HVFN+D+P   + Y+HRIGRTGRAG  G A T V  +D   + 
Sbjct: 294 LVASDIAARGLDVEGVTHVFNYDIPTDLKYYVHRIGRTGRAGTKGMAITYVTPKDAVMLR 353

Query: 359 AIEKLIEKKVDWLN--GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            +EK I + +   +  G +  +     K  +      +       K+ G   R      +
Sbjct: 354 KLEKSIHETLTRYDERGRVKKVRQAKPKRRVVTPGMYKPTKKKEHKALGHKGRNMRQRRK 413

Query: 417 KS 418
           K+
Sbjct: 414 KT 415


>gi|145511916|ref|XP_001441880.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409141|emb|CAK74483.1| unnamed protein product [Paramecium tetraurelia]
          Length = 604

 Score =  148 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 135/397 (34%), Positives = 211/397 (53%), Gaps = 20/397 (5%)

Query: 1   MDFADLGLSPK-VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M F D+   P+ ++  +L AG+  PT IQ +   + L  HD+ GIAQTG+GKT +F+LP 
Sbjct: 133 MRFEDVQCFPQMLMDLLLKAGFKGPTAIQAQGWSIALTGHDLIGIAQTGSGKTLAFLLPA 192

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  +   +AR   P+ LIL PTREL  Q+ D F+K+     L  A L GG     Q  +L
Sbjct: 193 IVHI-LAQARSHDPKCLILAPTRELTLQIYDQFQKFSVGSQLYAACLYGGQDRYIQKSQL 251

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  +LI  PGR++D  ++G   +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 252 RKGPQILIACPGRLIDLLDQGCTTLKQVSFLVLDEADRMLDMGFEPQIRKIVDQIRPQRQ 311

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA------------- 226
           T+LFSAT   E+QK++ +F +                     +                 
Sbjct: 312 TMLFSATWPKEVQKLALDFCKQEPVHIQIGNVELTSNRMIKQIVYVMKAIDKNQRYNQTI 371

Query: 227 ----QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                Y++    L   L      K  +IFC+ KK    L  +L+++G    A+HG+  Q 
Sbjct: 372 DGANIYTRSSISLLLYLLKDIAHKKILIFCSTKKGCDQLQKTLDREGIRCLALHGDKKQT 431

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R  ++S+F+ G    ++A+D+A+RGLDI D+  V N+D+P   E+Y+HRIGRTGRAG  
Sbjct: 432 ERDYVMSHFRNGRSTALIATDVASRGLDIKDIEVVVNYDMPKVIEDYVHRIGRTGRAGAI 491

Query: 343 GKAFTLV-AKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G++ +   + ED++    + +++ +  + +  +L SL
Sbjct: 492 GQSISFFASDEDVRMAKDLVEILRESQNDIPYELRSL 528


>gi|328958182|ref|YP_004375568.1| ATP-dependent RNA helicase [Carnobacterium sp. 17-4]
 gi|328674506|gb|AEB30552.1| ATP-dependent RNA helicase [Carnobacterium sp. 17-4]
          Length = 488

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 132/422 (31%), Positives = 226/422 (53%), Gaps = 13/422 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  +S +++ A+    Y  PT +Q + IPL L+  DV   +QTG+GKT S+ +P+  
Sbjct: 11  TFEEFAISDEIIAALTSLRYFHPTKVQEEVIPLALEGKDVIVESQTGSGKTVSYGVPLCE 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +   P+ L+L PTRELA QV ++    G+   +    + G   F+ Q  +L++
Sbjct: 71  KVDWEENK---PQVLVLVPTRELAIQVKEDLMNVGRLKRVKATAVYGKASFDTQKSELKQ 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + +++ TPGR+LDH  +G   +  IE LV+DEAD ML+MGF   ++ I + +P  RQTL
Sbjct: 128 KSHIVVGTPGRVLDHLQKGTFKIEKIECLVLDEADEMLNMGFADQVEAIINFLPAERQTL 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+++++  +++  K+  V   +  ++           +  K        L +
Sbjct: 188 LFSATMPKEIERIASFYMKPDKQSIVIETTELSKPKIIQSSVKVQEDKK--EQQLLDLLT 245

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + +IFCN ++ V NL   L K G  +  IHG + Q  R  ++ +F++G  + +VA
Sbjct: 246 VENADSCMIFCNTQEAVNNLYTFLNKAGLPIDKIHGGMVQEDRFSVMDDFRQGRFRYLVA 305

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI +V HV NFDVP   E+++HR GRTGRAG+ G A TLV  ++ K  + ++
Sbjct: 306 TDVAARGIDIENVTHVVNFDVPVEKESFVHRTGRTGRAGKTGMALTLVTPKEEKWWNEVK 365

Query: 362 KLIEKKV--------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           +   + V          +    S+    L++    +   +++ N    K      +KK  
Sbjct: 366 EYAGQTVIEVSLPTTRLVQSHKSAFEKKLQERPPLKQVRSKELNRGITKVYFNGGKKKKM 425

Query: 414 SS 415
            +
Sbjct: 426 RA 427


>gi|90023351|ref|YP_529178.1| putative ATP-dependent RNA helicase [Saccharophagus degradans 2-40]
 gi|89952951|gb|ABD82966.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 436

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 135/426 (31%), Positives = 220/426 (51%), Gaps = 9/426 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F++LGL   +  A+    + KPT +Q++TIP VL   D+   A+TG+GKTA+F+LPML
Sbjct: 1   MEFSELGLHQSLQKALDKLTFTKPTDVQVQTIPAVLAGKDIMVSAKTGSGKTAAFLLPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                        R LIL PTRELA Q    FE++     + V L++GG  ++ Q   + 
Sbjct: 61  HKFLNDPRPNTSTRALILLPTRELALQTVKAFEQFAGYTQIKVGLIMGGEAYKHQVATVR 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  +VL+ TPGR+++H   G +  +++E LV+DE+DRMLDMGF   +  I ++    RQ 
Sbjct: 121 KNPEVLVATPGRLVEHIKNGNVDFSDLEFLVLDESDRMLDMGFQENMLAIAAVCNEERQN 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  +        LQ+P RI+V++       I    V       K+  +++    
Sbjct: 181 LLFSATLKHKGIGGITGLLQDPVRIQVDSAKEGHSNITQQRVFADDDSHKEKLVVKL--I 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++  +  I+FCN +     + + L         IHG + Q  R ++++ F +G I+++V
Sbjct: 239 AEEDAQRVIVFCNTRLQCQKVSNILRANKLVSEYIHGEVTQSDRKQVMNRFIDGKIRVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI DV  V NF      + ++HR+GRTGR+ + G A TL++ ++   + +I
Sbjct: 299 ATDVAARGLDIKDVDLVINFSAAFTGDEHVHRVGRTGRSDKTGLAITLISPKEFNPMSSI 358

Query: 361 EKLIEKKVDWLNGDLSSLN-----PPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           E+ +  K+  +   +  L      P   K         +K         G     K    
Sbjct: 359 ERYL--KIRLIPRKVKGLEGTYNGPKKLKSSGKAAGPKKKKTKTTAGKPGKKLPSKKDPQ 416

Query: 416 QKSHIP 421
           +K   P
Sbjct: 417 KKRSAP 422


>gi|39104462|dbj|BAD04052.1| vasa homologue [Leucopsarion petersii]
          Length = 645

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 130/388 (33%), Positives = 203/388 (52%), Gaps = 13/388 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   +   V  +GYVKPTP+Q   +P++    D+   AQTG+GKTA+F+LP+L
Sbjct: 210 MSFEEAALCESLKKNVSKSGYVKPTPVQKHGVPIISAGRDLMACAQTGSGKTAAFLLPIL 269

Query: 61  TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + ++ P  LI+ PTREL  Q+     K+     +   ++ GG+    
Sbjct: 270 QHLMADGVAASQFSELQEPEALIVAPTRELINQIHLEARKFAYGTCVRPVVVYGGVSTGH 329

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
           Q + L RG ++L  TPGR+LD  NRGK+ +  +   V+DEADRMLDMGF P ++      
Sbjct: 330 QIRDLCRGCNILCGTPGRLLDVINRGKVGLTKLRYFVLDEADRMLDMGFEPDMRRLVGSP 389

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++QK++ +FL+             A T  +       ++ K
Sbjct: 390 GMPTKEDRQTLMFSATYPEDIQKLAADFLKTDYLFLAVGIVGGACTDVNQEFVEVTKFDK 449

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  LL+ L  +       ++F   K+    +   L ++     +IHG  +QR R + L +
Sbjct: 450 REKLLELLKTTGT--DRTMVFVETKRLADFIAAFLCQEKVPTTSIHGGREQREREQALGD 507

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDIPDV +V NFD+PN  + Y+HRIGRTGR G  G+A +   
Sbjct: 508 FRSGKCPVLVATSVAARGLDIPDVQNVVNFDLPNNIDEYVHRIGRTGRCGNLGRAVSFFD 567

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSS 377
            + D +    +  ++ K    +   L  
Sbjct: 568 PDNDSQLARPLISILSKAQQEVPSWLEE 595


>gi|300176667|emb|CBK24332.2| unnamed protein product [Blastocystis hominis]
          Length = 408

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 115/375 (30%), Positives = 190/375 (50%), Gaps = 7/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF   GL  +++  + + G+ KP+P+Q +TIP +L   D+   ++ GTGKT ++V+P   
Sbjct: 35  DFEKYGLKEEIMSVLCEKGWEKPSPVQSQTIPSILSGKDILARSKNGTGKTGAYVIP--- 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + +   + R+ + LIL P RELA Q +    ++GK   +      GG        +L R
Sbjct: 92  CMNQIDPKERVIQVLILVPARELALQTSRVVREFGKALKVDSMCCFGGQRLADDLYRLRR 151

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  VL+ T  RILD   RG   +++ + LV+DEAD+ML   F   ++++ + +P   QTL
Sbjct: 152 GVHVLVGTAARILDITRRGHCDLSHCKYLVLDEADKMLSDNFRQVVEDLIAFLPAEHQTL 211

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT    ++  +  ++  P  I     +    T++           ++       L S
Sbjct: 212 LLSATFPSTVRSFAAEYMHEPVMI----NTMNELTLKGITQYYVYLEERQKVNALHTLFS 267

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN    V  L   +   G+S   IH  ++Q  R K+  NF +G  + +V 
Sbjct: 268 KLEVNQSIIFCNSVARVELLAKKIIDLGYSCYYIHSRMEQDDRNKVFHNFSQGAARHLVC 327

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARGL++  V  V NFD+P  +E Y+HRIGR+GR G  G A   +  +D +    IE
Sbjct: 328 TDLLARGLNVTTVNVVINFDLPQSSETYLHRIGRSGRYGHLGLAVNFITDKDKEVFFTIE 387

Query: 362 KLIEKKVDWLNGDLS 376
           + ++ +V     ++ 
Sbjct: 388 QELDIEVQPFPKEVD 402


>gi|237808150|ref|YP_002892590.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237500411|gb|ACQ93004.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 468

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 130/441 (29%), Positives = 210/441 (47%), Gaps = 24/441 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+L +  ++  A+    Y + T +Q +TIP  L   D+   ++TG+GKT +++LP++
Sbjct: 1   MRFAELTMHKRLKEAMAHLDYTEMTEVQAQTIPYALIGRDLAVASKTGSGKTLAYLLPLM 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L   RA   R PR LIL PTRELA QV            +  +L++GG  F  Q K L
Sbjct: 61  HRLLTSRALSTRGPRALILAPTRELAKQVYAQLRFLVAGTQVHCSLVLGGENFNDQIKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  ++L+ TPGR+L+H      L + +EILV+DEADRMLD+GF   ++ I S      +
Sbjct: 121 RKTPEILVATPGRLLNHLTARSFLFDGVEILVLDEADRMLDLGFADALKAIHSAASHRLR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
                +   +       +         ++     A   +   V     +      L + L
Sbjct: 181 QTWLFSATLNNQSVEMLSGYILKAPQSISIGEMHAIHADINEVFHLCDHLDHKQALLKHL 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            SQ   +  I+F   +++   L     +      A+ G++ Q  R +++  F  G  +++
Sbjct: 241 LSQPDYQQAIVFLATREDTERLAKQYSELNIPALALSGDMKQAQRNQVIDQFSRGHAKVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
             +D+AARGLD+  V  V NFD+P   E YIHRIGRTGRAG  G A +L++ +D      
Sbjct: 301 FTTDVAARGLDLLHVSLVVNFDMPKLPEEYIHRIGRTGRAGNQGNAVSLISPKDWVSFQG 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +  L  ++V +      ++ P LE          R    + QK+T F        S K  
Sbjct: 361 LMALQRREVTF------TVIPGLE---------GRFKGVLAQKNTKF--------SGKGA 397

Query: 420 IPLKESEKISKLQQDIQENDA 440
            PL E++  ++ ++   +N A
Sbjct: 398 HPLAEAKAAAQGKRSFNKNTA 418


>gi|322820447|gb|EFZ27062.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 595

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 118/398 (29%), Positives = 204/398 (51%), Gaps = 9/398 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP- 58
           +F  L   +   +   +   G+  PT +Q +  P++L+  D+ G+A+TG+GKT +F++P 
Sbjct: 111 NFDQLSAFVPAYLQKKLTAQGFTSPTAVQAQAWPILLRGRDMVGVAKTGSGKTLAFMVPA 170

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  I  +   R      +++       AQ  +   K    ++L    + GG P   Q   
Sbjct: 171 LAHIAMQEPLRTGDGPMVVVLAPTRELAQQIEQETKKVLPHDLRCGCVYGGAPKGPQLGI 230

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G  +L+ TPGR++D     ++    +  LV+DEADRMLDMGF P ++ I   +   R
Sbjct: 231 LRNGVHILVATPGRLIDFLEIKRINFFRVTYLVLDEADRMLDMGFEPQVRAICGQIRPDR 290

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT   E+Q+++  F ++  RI V +    A            +++K      + 
Sbjct: 291 QTLMFSATWPKEIQRLAAEFQKDWIRINVGSTELLANKDVTQHFILTQEHAKMDE--LKK 348

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +    +  +IFC  K+   +L   L++ G+   AIHG+ +QR R  IL  F++     
Sbjct: 349 LLANRLNQRVLIFCKTKRTADDLEWQLKRWGYDAMAIHGDKEQRQREFILERFRKDPRLC 408

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH-- 356
           +VA+D+AARGLDI ++  V N+D P + ++Y+HRIGRTGRAG  G+AFTL+ K + +   
Sbjct: 409 LVATDVAARGLDIKELETVINYDFPMQIDDYVHRIGRTGRAGAKGEAFTLITKREKQITP 468

Query: 357 --IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
             +  +  ++++    +   L      + +  + + N 
Sbjct: 469 AVVTELIAIVDRAQQQVPDWLREWGEQMPRYQVMKRNR 506


>gi|281209492|gb|EFA83660.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 880

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 118/426 (27%), Positives = 200/426 (46%), Gaps = 16/426 (3%)

Query: 3   FADLG-----LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           F +L      L   +   +   GY +P+PIQ++ IP +L+  +V   A TG+GKTA+F +
Sbjct: 382 FKELDGEPYSLKNYLSRNIASMGYSQPSPIQMQAIPAILKEREVIACAPTGSGKTAAFTI 441

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           P+L  L   + +    R +I+ PTRELA Q+   F  + K     + +L  G+    + +
Sbjct: 442 PILHTL--NKPQKVGFRAVIISPTRELAQQIYRQFRLFSKGKPFRICVLTKGLSQSNKAE 499

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              +  D+LI TP R++       + +N +E LV DEAD++ D  F+  + ++ +     
Sbjct: 500 PFSKTFDILITTPLRLVHLIKEENVNLNKVEHLVFDEADKLFDQQFVEQVDDVVNACKNK 559

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +  +   +   + L +     + N     V    ++A T     +    +   K   ++Q
Sbjct: 560 KLKISLFSATMNNLVEDMARSIMNNPIKIVIGQENSASTNVDQKLIFVGKEEGKLLAVRQ 619

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L Q        +IF   K+    L   L     +V  IH +  Q  R KI+  F+ G I 
Sbjct: 620 LFQKGLEP-PVLIFVQSKERAQELFQELIFDNINVDVIHSDRTQFQRDKIVEKFRTGKIW 678

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ ++L ARG+D   V +V NFD P    +Y+HRIGRTGRAGR G A+TL  + D   +
Sbjct: 679 VLICTELMARGMDFKGVNYVINFDFPKTVASYVHRIGRTGRAGRTGVAYTLYTEADAPML 738

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST--GFDRRK--KNY 413
            +I  +I      +   + ++    +     +HN+ ++       ST    +R K     
Sbjct: 739 PSIANVIRNSGSEVPEWMHTIKVKRQD----KHNYKKRGVERESISTIPKSERWKVINRS 794

Query: 414 SSQKSH 419
           SS+KSH
Sbjct: 795 SSKKSH 800


>gi|307721994|ref|YP_003893134.1| ATP-dependent RNA helicase DbpA [Sulfurimonas autotrophica DSM
           16294]
 gi|306980087|gb|ADN10122.1| ATP-dependent RNA helicase DbpA [Sulfurimonas autotrophica DSM
           16294]
          Length = 452

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 135/363 (37%), Positives = 207/363 (57%), Gaps = 10/363 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+FA L LSP+++  +   GY + TPIQ +++P +L+  D+   A+TG+GKTA+F + +L
Sbjct: 1   MNFATLPLSPQMLQTIESLGYKEMTPIQAQSLPSILEGRDIIAQAKTGSGKTAAFGIGLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             L   + RV+   +L+L PTRELA QVA    +  +  +N+ + +L GG  F  Q   L
Sbjct: 61  HHLNVKKFRVQ---SLVLCPTRELADQVAKELRRLARFQHNIKILMLSGGESFGRQLGSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              A +++ TPGR+L H N+  L ++N+  LV DEADRMLDMGFI  I+++ + VP  RQ
Sbjct: 118 AHQAHIIVGTPGRVLKHLNKESLELSNLNTLVFDEADRMLDMGFIEEIESVLAFVPKERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  DE+ ++S+    N   ++        + ++  +                 +
Sbjct: 178 TLLFSATYDDEILQISKRIQNNALHVKTAAQEVQNKIVQEFYETN------DKVDTLIKI 231

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +N I+F N K     L  SL +      AIHG+++Q  R  +L  F   +  ++
Sbjct: 232 LANYKPENVIVFTNTKLEAKELAESLVQNKIDALAIHGDLEQYERNDVLVQFANKSCPVL 291

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI D+  V N+D+P+  E Y HRIGRTGRAG  G A TL  + + + I+ 
Sbjct: 292 VATDVAARGLDIKDLSMVVNYDLPHSMETYTHRIGRTGRAGAEGIAVTLYNEYEAQKIEP 351

Query: 360 IEK 362
            E+
Sbjct: 352 YEE 354


>gi|90020267|ref|YP_526094.1| ATP-dependent RNA helicase RhlB [Saccharophagus degradans 2-40]
 gi|89949867|gb|ABD79882.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 392

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 128/385 (33%), Positives = 212/385 (55%), Gaps = 6/385 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L LSP V+ A+ D  + + + IQ K++P  L+ HDV G AQTGTGKTA+F++ ++
Sbjct: 6   LSFEELNLSPLVMRALSDLKFTECSAIQAKSLPFTLRGHDVLGKAQTGTGKTAAFLIALI 65

Query: 61  TILEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L              R+L++ PTRELA Q+A + E   K+ +L V +L+GG+ +  Q 
Sbjct: 66  EDLLGTPIEEERYAGEARSLVIAPTRELAMQIAKDAENLVKHTDLKVHILVGGVDYAKQL 125

Query: 117 KK-LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           +K      D+L+ TPGR+LD   +  + ++ +E+LVIDEADRMLDMGFIP ++ I  + P
Sbjct: 126 QKLQAEHIDILVATPGRLLDFCEKRAVYLDQVEVLVIDEADRMLDMGFIPQVKRIVRMTP 185

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +        + T   + V     Q        +        +      Y   S++   +
Sbjct: 186 PSTHRQTLLFSAT-FSEDVLRLSEQWMHEPVTVSIEDENVAADRVKQVVYLVSSEEKFTV 244

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L  +  ++N +IF N++    +L H L+++GF V  + G I Q  R++ L +F+ G 
Sbjct: 245 LGNLMREPDVENIMIFANRRDQCRDLHHKLQRRGFRVGLLSGEIAQNKRIRTLEDFRTGK 304

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +  +VA+D+A RG+ I  + HV N+ +P   E+Y+HRIGRTGRAG+ G + +L  ++D  
Sbjct: 305 LTALVATDVAGRGIHIDGISHVVNYTLPEEPEDYVHRIGRTGRAGKEGVSVSLACEDDAL 364

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNP 380
            ++ I++L+ +K+         L P
Sbjct: 365 RLEPIQELLGRKIPCEQPPEELLKP 389


>gi|320530074|ref|ZP_08031144.1| DEAD/DEAH box helicase [Selenomonas artemidis F0399]
 gi|320137507|gb|EFW29419.1| DEAD/DEAH box helicase [Selenomonas artemidis F0399]
          Length = 423

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 137/419 (32%), Positives = 221/419 (52%), Gaps = 25/419 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA++G+S  +   + + G   PTP+Q + +P +    DV   AQTGTGKT +F+LP+L
Sbjct: 2   MPFAEIGVSEALCTLLKNRGISVPTPVQERAVPAMRAGRDVIAQAQTGTGKTLAFLLPVL 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++   A V+    L++ PTRELA Q+A   E      ++   L+ GG   E Q +KL 
Sbjct: 62  EKIKPQGAVVQ---ALVIAPTRELAIQIARVAEPLAAALSIGTTLVYGGADIERQKEKLR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++I TPGR+LDH  RG L + ++  +V+DEAD ML +GFI  ++ +        Q 
Sbjct: 119 RHPQLVIGTPGRLLDHVRRGTLALGSVNKVVLDEADEMLKLGFIEDVETLLGHTAQDYQL 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + + ++++ F+ NP RI++    +T E I        +   ++         
Sbjct: 179 ALFSATMPERIVQLTKRFMHNPARIKIEGEHTTLENI---EQIALSVNEEEKLDRLCASI 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++     ++FC  K+    L  +L  +G+ V A+ GN+ Q  R  +L  F+   +Q++ 
Sbjct: 236 NEEAPYLAMVFCATKERTHALMMALAGRGYLVDALSGNLTQTQRAFVLRQFRAAKLQILC 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P    +YIHRIGRTGRAG  G+A TLV     + +  I
Sbjct: 296 ATDIAARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGARGRAITLVTARQHEKLRKI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           E  +++++                   A+    +K  P PQK+      ++   S+   
Sbjct: 356 ESALKERL-------------------ARAAVKKKPRPAPQKAQPDKEGRRVVQSRPPR 395


>gi|15234166|ref|NP_195063.1| DEAD-box protein abstrakt, putative [Arabidopsis thaliana]
 gi|75337897|sp|Q9SZB4|RH43_ARATH RecName: Full=Putative DEAD-box ATP-dependent RNA helicase 43
 gi|4490304|emb|CAB38795.1| putative protein [Arabidopsis thaliana]
 gi|7270285|emb|CAB80054.1| putative protein [Arabidopsis thaliana]
 gi|332660816|gb|AEE86216.1| putative DEAD-box ATP-dependent RNA helicase 43 [Arabidopsis
           thaliana]
          Length = 542

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 132/406 (32%), Positives = 210/406 (51%), Gaps = 16/406 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F D+     ++  + D G + PTPIQ++ +P+VL   D+ GIA TG+GKT  FVLPM  
Sbjct: 98  NFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMII 157

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG------KNYNLTVALLIGGI 110
                 +    A    P  L++ P+RELA Q  D  E++           L   L IGG+
Sbjct: 158 LALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGV 217

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q   +++G  +++ TPGR+ D   + K+ ++   +L +DEADR++D+GF   I+++
Sbjct: 218 DMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHV 277

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q     F  +     V      A       +       +
Sbjct: 278 FDHFKSQRQTLLFSATMPAKIQI----FATSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 333

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IFC  K +V ++   L  +G    AIHG  DQ  R   +S 
Sbjct: 334 EAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISL 393

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+A++GLD PD+ HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 394 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFIN 453

Query: 351 KEDIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           K   +  +  ++ L+++    +   L+ LN P+E+ +   +    K
Sbjct: 454 KNQSEITLLDLKHLLQEAKQRIPPVLAELNGPMEETETIANASGVK 499


>gi|332374956|gb|AEE62619.1| unknown [Dendroctonus ponderosae]
          Length = 588

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 102/454 (22%), Positives = 190/454 (41%), Gaps = 17/454 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL +    +  +   GY  PTPIQ + +P++LQ   +   A TG+GKTA+F++P++ 
Sbjct: 119 TFSDLKVKESTIENLRKCGYEDPTPIQKQAMPIMLQGRHLLACAPTGSGKTAAFLVPIIE 178

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL-------IGGIPFEA 114
            L++ + +    R LIL PTRELA+Q      +  +     + ++               
Sbjct: 179 ALKEPQKQGF--RALILCPTRELASQTQRECVRLSEGIGFRIHIIGKVNKALTQYGAKSN 236

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           +   +       +C   +      +   +   +        +           Q + +  
Sbjct: 237 KKYDILITTPNRLCFLLKQDPPAIQLSNVQWLVIDEADKLFEEGSRSFRDQLDQILQACS 296

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              R+  +FSAT T  + K   + +    R+ V   ++  +T++       ++  K    
Sbjct: 297 SSDRKVAMFSATHTPVVAKWCVHNMPGLLRVTVGQRNAATDTVDQKLQFVGSEQGKLI-- 354

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             + L  Q      +IF   K+    L + L   G  V AIH +  Q  R  ++  F+EG
Sbjct: 355 AIRDLIRQGISPPVLIFVQSKERAQQLFNELIYDGIMVDAIHADRTQTQRDNVVKCFREG 414

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I +++ ++L ARG+D   V  V N+D P    +Y+HRIGR GRAGR GKA T   ++D 
Sbjct: 415 KIWVLICTELMARGIDFKGVNLVVNYDFPPSTISYVHRIGRAGRAGRTGKAVTFFTQDDT 474

Query: 355 KHIDAIEKLIEKKVDWLNGDL--SSLNPPLEKIDIAQHNHARKN---NPIPQKSTGFDRR 409
             + ++  ++++    +   L            ++A+    R      PI  +  G  ++
Sbjct: 475 PLLRSVAHVLKESGCDVPEYLLAIKKKNKKAIKEVARRAPTRDEITTVPIYDRLKG-GKK 533

Query: 410 KKNYSSQKSHIPLKESEKISKLQQDIQENDADSL 443
           +K     K     K+S     +++ +Q+      
Sbjct: 534 QKFREIAKRMKAAKQSNPKKMVKKSLQQRTKTKQ 567


>gi|294660132|ref|XP_462573.2| DEHA2G23782p [Debaryomyces hansenii CBS767]
 gi|218512022|sp|Q6BGU8|DBP8_DEBHA RecName: Full=ATP-dependent RNA helicase DBP8
 gi|199434486|emb|CAG91086.2| DEHA2G23782p [Debaryomyces hansenii]
          Length = 441

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 130/428 (30%), Positives = 203/428 (47%), Gaps = 17/428 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LG+S  +  A+       PT IQ   IP +L+ HD  G A+TG+GKT +F  PML
Sbjct: 1   MSFEELGVSKWLSEALNSMKIHTPTTIQSACIPKILKGHDCIGGAKTGSGKTIAFAAPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T   +          L+L PTRELA Q+A+ F   G + N+ V++++GG     Q  +L+
Sbjct: 61  TQWSE---DPSGIYGLVLTPTRELALQIAEQFAALGSSMNIKVSVIVGGEDIVKQALELQ 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILV------IDEADRMLDMGFIPYIQNITSLV 174
           R    ++ TPGR+ DH              V        +       G            
Sbjct: 118 RRPHFVVATPGRLADHILNSGEDTVCGLRRVKYLILDEADRLLSNSFGGDLERCFNILPS 177

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQN-----PKRIEVNTPSSTAETIEHCFVATYAQYS 229
              RQTLLF+AT+TD ++ + +  +                     +           Y 
Sbjct: 178 TDKRQTLLFTATVTDAVRALKDRPVPKGKLPVFIHEVETVDKVAIPSTLSVKYVFVPSYV 237

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  L   L   Q +    IIF N+      L  +L K  F V ++H  + Q  R   L 
Sbjct: 238 KEAYLHSILNLPQYSDSLSIIFTNRTATAELLRRTLRKLEFRVASLHSEMPQTERTNSLH 297

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G  ++++A+D+A+RGLDIP V  V N+D+P  A+++IHR+GRT RAGR G A ++V
Sbjct: 298 RFKAGAAKILIATDVASRGLDIPTVELVVNYDIPADADDFIHRVGRTARAGRKGDAISIV 357

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           A++D+  I AIE+ I KK+D +  D+S     + K  + + + A++   +      F  +
Sbjct: 358 AEKDVDRILAIEERINKKMDLIE-DISD--NKVIKDSLNKTSVAKREAFMDMDRENFGEK 414

Query: 410 KKNYSSQK 417
           +K   S++
Sbjct: 415 RKINKSKR 422


>gi|170059153|ref|XP_001865238.1| ATP-dependent RNA helicase abstrakt [Culex quinquefasciatus]
 gi|167878066|gb|EDS41449.1| ATP-dependent RNA helicase abstrakt [Culex quinquefasciatus]
          Length = 619

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 122/367 (33%), Positives = 191/367 (52%), Gaps = 15/367 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +      KP+PIQ++ IP VL   D+ GIA TG+GKT  FVLP++ 
Sbjct: 181 TFREMKFPKSILAGLEKRNIRKPSPIQVQGIPAVLAGRDLIGIAFTGSGKTLVFVLPIVM 240

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q  D  + Y ++           AL IGG+
Sbjct: 241 FSLEQEIRLPFMAKEGPYGLIICPSRELAKQTFDIVQYYCQHLQQAGMPEIRSALAIGGV 300

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
           P       +++G  +++ TPGR++D  ++  + ++    L +DEADRM+DMGF   ++ I
Sbjct: 301 PVNEALAVIQQGCHIMVATPGRLMDMLDKKLVKLDVCRYLCMDEADRMIDMGFEEDVRTI 360

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A               +
Sbjct: 361 FSYFKGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASMNVTQDVEYVKQ 416

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K++V  +   L  +G    AIHG  DQ  R + +  
Sbjct: 417 EAKVVYLLDCLQKTPPPVLIFAEKKQDVDAIHEYLLMKGVEAVAIHGGKDQEERYRSVEG 476

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+     ++VA+D+A++GLD PDV HV N+D+P+  ENY+HRIGRTGR+G  G A T + 
Sbjct: 477 FRTQEKDVLVATDVASKGLDFPDVQHVINYDMPDDIENYVHRIGRTGRSGSKGLATTFIN 536

Query: 351 KEDIKHI 357
           K   +++
Sbjct: 537 KATEQYV 543


>gi|293394818|ref|ZP_06639108.1| ATP-dependent RNA helicase SrmB [Serratia odorifera DSM 4582]
 gi|291422569|gb|EFE95808.1| ATP-dependent RNA helicase SrmB [Serratia odorifera DSM 4582]
          Length = 440

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 144/436 (33%), Positives = 225/436 (51%), Gaps = 14/436 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP + 
Sbjct: 5   NFSELDLDERLINALRDKGYDRPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPVLQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +   + +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ T GR+L +          +E L++DEADRMLDMGF   I+ I++   +  QT
Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRNQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  E  +     +       V    S  E  +       A   K    L   L 
Sbjct: 185 LLFSATLEGEAIREFAERILKEPVE-VEADPSRRERKKILQWYYRADDVKHKTALLVHLL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  ++  +IF  +++ V  L   L + G + C + G + Q  R + +    +G + ++V
Sbjct: 244 QQPDVQKSVIFVRKRERVHELATWLREAGINTCYLEGEMVQAKRNEAVKRMMDGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  +
Sbjct: 304 ATDVAARGLDILDITHVFNFDMPRTADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKV 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR---RKKNYSSQK 417
            + + + +     D         ++  +    + K+N  P K     R   ++KN    K
Sbjct: 364 GRYLNEPLKARVID---------ELRPSTKQPSEKSNGKPSKKVLAKRAESKEKNKEKAK 414

Query: 418 SHIPLKESEKISKLQQ 433
             +  ++++ + K +Q
Sbjct: 415 VKVRHRDAKNVGKRRQ 430


>gi|227833123|ref|YP_002834830.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262182386|ref|ZP_06041807.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227454139|gb|ACP32892.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 430

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 143/401 (35%), Positives = 204/401 (50%), Gaps = 9/401 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-L 60
            FADLGL   VV  +   G   P PIQ   IP  L   DV G   TG+GKT +F LPM  
Sbjct: 3   TFADLGLPRDVVRVLDKQGITTPFPIQEAAIPDALSGKDVLGRGPTGSGKTFTFGLPMLS 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +   G +R   PR L+L PTRELA Q+    E+      L V  ++GG+      + L 
Sbjct: 63  RLAASGVSRPAHPRGLVLAPTRELATQIQQRLEEPAAALGLRVLAVVGGVNINNHIRSLA 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R  D+L+ TPGR  D  ++GKL  +++ I  +DEAD+M DMGF+P ++ +  L P   Q 
Sbjct: 123 RPVDLLVATPGRAQDLIDQGKLFFDHVAIAALDEADQMADMGFLPQVRKLLKLTPEEGQR 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  E+ K+ E F+  P         +  +T+EH  +    + ++   +L+   +
Sbjct: 183 LLFSATLDGEVNKLVEQFMHEPVTHSTAPVEAAVDTMEHHLIFIGTREARNDVVLRLGAR 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K  V      L + G +   +HG+  Q SR K +  F +G++ ++V
Sbjct: 243 K----GKTIMFMRTKHGVDRQAKKLRRVGINALPLHGDKGQGSRTKAIEGFADGSVPVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV  V + D P   + Y+HR GRT R G  G   TLV  E     D +
Sbjct: 299 ATDIAARGIDIADVSLVVHVDPPAEHKAYLHRSGRTARGGESGTVVTLVTDEQR---DEV 355

Query: 361 EKLIEKK-VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
            KLI K  V   + D+S    P    ++AQ   ARK    P
Sbjct: 356 AKLIAKAGVKHTDLDISDRANPASSPELAQMTGARKPKGEP 396


>gi|149235261|ref|XP_001523509.1| ATP-dependent rRNA helicase RRP3 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152060561|sp|A5E6W6|RRP3_LODEL RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|146452918|gb|EDK47174.1| ATP-dependent rRNA helicase RRP3 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 504

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 114/416 (27%), Positives = 184/416 (44%), Gaps = 10/416 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  L P+++ ++    Y +PTPIQ   IP  LQ  D+ GIA+TG+GKTA+F +P+L 
Sbjct: 99  SFTEFDLVPELLESIQSLKYTQPTPIQAAAIPHALQGKDIVGIAETGSGKTAAFAIPILQ 158

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L       +    L+L PTRELA Q+ + F+  G +  L    +IGG+    Q + L R
Sbjct: 159 TLYTA---AQPYYALVLAPTRELAFQIKETFDALGSSMGLRSVCIIGGMSMMEQARDLMR 215

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR++DH    K         ++ +    +    + Y + I  ++       
Sbjct: 216 KPHVIIATPGRLIDHLEHTKGFSLKKLQYLVMDEVDRMI--DLDYAKAIDQILKQIPSHQ 273

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
             +   T  + +  E F ++             +  +                    + +
Sbjct: 274 RITYLYTATMSREIEKFKRSLNSPVQVEIVKLEKVPDKLKQTMCLTSPNTKDTRLIQIVN 333

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D+MK  IIF     +    C  L   GF    +H     +SR     N  +    ++VA
Sbjct: 334 LDSMKRVIIFTRTVVHTRRCCLMLLNLGFKCVELH-GQMPQSRRLGAINKFKAGTPILVA 392

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP V  V N+D+P     YIHR+GRT RAG+ GKA +LV + D++    IE
Sbjct: 393 TDVAARGLDIPAVDLVINYDIP-DPTLYIHRVGRTARAGKAGKAISLVTQYDLESYLRIE 451

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             +  K+   +  L  +      +D A    ++    +  +      R +  S+ K
Sbjct: 452 NTLGTKLPKEDLPLDEMQGLQVSVDRA---LSKAIQMLRNEENDNKLRHRGRSNNK 504


>gi|148613135|gb|ABQ96192.1| vasa [Melipona scutellaris]
 gi|205318889|gb|ACI02436.1| vasa [Melipona quadrifasciata]
          Length = 624

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 126/386 (32%), Positives = 201/386 (52%), Gaps = 16/386 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL   V+  +  +GY KPTP+Q   +P+++   D+   AQTG+GKTA+F +P++ 
Sbjct: 195 SFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPIIN 254

Query: 62  ILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            L +             P+ +I+ PTREL  Q+     K+  N  L   +  GG     Q
Sbjct: 255 TLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQ 314

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL  G  +L+ TPGR+LD   +G++  ++++ LV+DEADRMLDMGF+P I+ +     
Sbjct: 315 RGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHET 374

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTL+FSAT  DE+  ++  FL N   + V         +E  F        K 
Sbjct: 375 MVPLGERQTLMFSATFPDEVHHLARRFLNNYLFLAVGIVGGARSDVEQNFCEVARNKKKD 434

Query: 232 -CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
               + +      T+   ++F   KK    +   L +  +   +IHG+  QR R + L++
Sbjct: 435 LLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALAD 494

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G + ++VA+ +AARGLDI +V HV N+D+P   + Y+HRIGRTGR G  G+A +   
Sbjct: 495 FKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRATSFFD 554

Query: 351 KEDIKHID-AIEKLIEKK----VDWL 371
            E+   +   + +++++      DW+
Sbjct: 555 PEEDAPLRGDLVRILKQANQSVPDWM 580


>gi|23501930|ref|NP_698057.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
 gi|23347874|gb|AAN29972.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis
           1330]
          Length = 535

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 151/421 (35%), Positives = 234/421 (55%), Gaps = 8/421 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMCDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEI---TQVVHPVPTKEKRRLLSAML 325

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 326 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 445

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E++   K+   +  +     P+ K    Q    R      +K+     R+    + + H
Sbjct: 446 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--GQRTEQAESRKAPAHKHRRPAQKAGEQH 503

Query: 420 I 420
            
Sbjct: 504 R 504


>gi|238927921|ref|ZP_04659681.1| DEAD/DEAH box helicase domain protein [Selenomonas flueggei ATCC
           43531]
 gi|238884254|gb|EEQ47892.1| DEAD/DEAH box helicase domain protein [Selenomonas flueggei ATCC
           43531]
          Length = 426

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 137/431 (31%), Positives = 216/431 (50%), Gaps = 11/431 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+S  +   +   G  +PTP+Q + IP +    DV   AQTGTGKT +++LP+L  
Sbjct: 4   FDQLGISETLTALLQKQGITQPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLAYLLPLLAR 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++   A  +    L++ PTRELA Q+        +   +   ++ GG   E Q +KL R 
Sbjct: 64  IKPQGAAAQ---ALVIAPTRELAIQIEHVAASLAEPLGIGTTVIYGGADIERQKEKLRRS 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++I TPGR+LDH  RG L +  +  +V+DEAD ML MGFI  ++ +        Q  L
Sbjct: 121 PQLVIGTPGRLLDHVRRGTLALGRVNKVVLDEADEMLKMGFIEDVETLLGAAAQDYQLAL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM + + ++++ F+ NP  I +   + T   IE   +   A              ++
Sbjct: 181 FSATMPERIVRLTKRFMTNPAHIRLAGETVTLAAIEQVVIPVSAGDK---LDRLCASINE 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     ++FC  K+    L   L ++G+ V A+ G++ Q  R  +L  F+   +Q++ A+
Sbjct: 238 EAPYLAMVFCATKERTRALMMELAQRGYLVDALSGDLTQTQRSFVLRQFRSAKLQILCAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI  V HV+N+D+P    +YIHRIGRTGRAG  GKA TLVA    + +  +E 
Sbjct: 298 DIAARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGTQGKAITLVAPHQHEKLRKMEA 357

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPL 422
            ++     L  D+  +         A    A+K    P+ +      K+  S  +S    
Sbjct: 358 ALKA---CLRRDV--VKKKKRPAPPAGEGDAQKKAHPPRDAKRRALPKRTKSKPRSKKAG 412

Query: 423 KESEKISKLQQ 433
           K    I +  +
Sbjct: 413 KTVTNIGRRSR 423


>gi|46124501|ref|XP_386804.1| hypothetical protein FG06628.1 [Gibberella zeae PH-1]
 gi|91206590|sp|Q4I830|DRS1_GIBZE RecName: Full=ATP-dependent RNA helicase DRS1
          Length = 796

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 132/359 (36%), Positives = 199/359 (55%), Gaps = 1/359 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++  +   G+ KPTPIQ K+IP+ L   DV G A+TG+GKT +F+LP+L 
Sbjct: 257 SFQTMSLSRPIMRGLASVGFTKPTPIQAKSIPIALMGKDVVGGAETGSGKTGAFILPILE 316

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     ++   R ++L PTRELA Q      K     ++   L +GG+  +AQ  +L+ 
Sbjct: 317 RLLYRPKKIPTTRVVVLLPTRELAIQCHAVATKLAAFTDIKFTLAVGGLSLKAQELELKL 376

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 377 RPDVIIATPGRFIDHMRNSASFSVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQT 436

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT  + ++ +  L  P R+ VN+   T  T+   FV        K       + 
Sbjct: 437 MLFSATMTSSVDRLIQIGLNRPARVMVNSQKKTVTTLVQEFVRLRPGREDKRMGYLAHVC 496

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  IIF  QKK+           G S   +HG+++Q  R+  + +F++G +  ++
Sbjct: 497 KNLYKERVIIFFRQKKDAHRARIIFGLLGLSCAELHGSMNQTQRISSVEDFRDGKVAYLL 556

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           A+DLA+RGLDI  V  V N++ P   + Y+HR+GRT RAGR G A T+ A+ D K + A
Sbjct: 557 ATDLASRGLDIKGVDTVINYEAPQSLDIYVHRVGRTARAGRKGVALTIAAESDRKVVKA 615


>gi|271501630|ref|YP_003334656.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270345185|gb|ACZ77950.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
          Length = 450

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 144/443 (32%), Positives = 223/443 (50%), Gaps = 14/443 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++  L   ++ A+ D G+ +PT IQ + IP  ++  DV G A TGTGKTA+++LP + 
Sbjct: 5   NFSEFDLDDSLLDALRDMGFSRPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD       + +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARALAAHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT
Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT   D +Q  +E  L +P  +E +      + I   +        K    L   L
Sbjct: 185 MLFSATLEGDAIQDFAERLLNDPAEVEADPSRRERKKILQWYYRADDIQHKTA--LLSHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  +   I+F  +++ V  L   L   G   C + G + Q  R + +    EG ++++
Sbjct: 243 LKQPDVTRSIVFVRKRERVHELVDWLRSAGIESCYLEGEMVQAKRNEAIKRLSEGRVKVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI DV HVFNFD+P  ++ Y+HRIGRTGRAGR G A +LV   D   +D 
Sbjct: 303 VATDVAARGLDIQDVSHVFNFDLPRTSDIYLHRIGRTGRAGRKGSAISLVEAHDYLLLDK 362

Query: 360 IEKLIEKK-----VDWLNGDLSSLNP-----PLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           I + + +      +D L     + +P     P +K+   +     K     +       R
Sbjct: 363 IGRYLNEPLKARVIDELRPSTRAPSPKSNGKPSKKVLAKRKEQKEKEKEKQKVKVKVRHR 422

Query: 410 KKNYSSQKSHIPLKESEKISKLQ 432
                 ++     K S +  K +
Sbjct: 423 DSKNIGKRRQPSAKASAEQPKEK 445


>gi|126444520|ref|YP_001061297.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 668]
 gi|126224011|gb|ABN87516.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 668]
          Length = 465

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 149/405 (36%), Positives = 221/405 (54%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 10  FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++    R    + L+L PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 70  IDA---RRFDVQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL++PKR+++      ++         Y     +      LL +
Sbjct: 187 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKI----RQRFYEVTEDERLHAVGLLLN 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 243 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E Y+HRIGRTGRA + G A +L +  ++  +  IE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 362

Query: 362 KLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           + + ++V+W        G  + L PP+E + I      RK+   P
Sbjct: 363 QALAREVEWHPLAELKAGGDAPLLPPMETLQIL---GGRKDKIRP 404


>gi|157873697|ref|XP_001685353.1| ATP-dependent RNA helicase [Leishmania major strain Friedlin]
          Length = 614

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 121/393 (30%), Positives = 195/393 (49%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA + L+P +   V    Y KPTP+Q   IP VL   D+   AQTG+GKTA++++P + 
Sbjct: 136 SFATMALAPALAENVNRCRYQKPTPVQKYGIPCVLNGSDLMACAQTGSGKTAAYLIPAIN 195

Query: 62  ILEKGRARVRMPRTL-------ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +         P          +L PTREL+ Q+ +   K+         ++ GG     
Sbjct: 196 FMLVNNLNRAKPTNSQAAPSALVLSPTRELSIQIYEEGRKFTYRTGFRCVVVYGGADPRH 255

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  +L RG  +L+ TPGR+ D F RG    +++  LV+DEADRMLDMGF P I+ I    
Sbjct: 256 QIHELTRGCGLLVATPGRLSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRAIVQGP 315

Query: 175 PFTRQTLL------FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
                         +SAT   E+Q+++  FL +   ++V    ST E I           
Sbjct: 316 DSDMPPPGERQTLLYSATFPKEIQQMAREFLYHHHFLQVGRVGSTTENITQDVRWVEDMD 375

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            +        +  +   +  ++F  +K++   L   L +      +IHG+  QR R + L
Sbjct: 376 KR---GCLLEVLKEHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEAL 432

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             FK G  +++VA+D+A+RGLDIP+V  V  +D+P+  ++Y+HRIGRTGRAG+ G A + 
Sbjct: 433 DIFKSGVCRVLVATDVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGRTGRAGKRGTAISF 492

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
              ++   +D +  L+ +    +  ++ +L   
Sbjct: 493 -NDKNRNIVDDLIPLLRETNQTVLPEVQALAKK 524


>gi|148543767|ref|YP_001271137.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus
           reuteri DSM 20016]
 gi|184153173|ref|YP_001841514.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112]
 gi|148530801|gb|ABQ82800.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri DSM
           20016]
 gi|183224517|dbj|BAG25034.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112]
          Length = 457

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 121/451 (26%), Positives = 209/451 (46%), Gaps = 20/451 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  L P ++ A+    + +PTP+Q + IP+++    V G + TG+GKT +F+LP+ +
Sbjct: 5   KFADFQLQPYLLTAIQKINFRQPTPVQQRVIPVIMAGRSVVGQSATGSGKTHAFLLPIFS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+   T             A    KY  +       + G       ++   +
Sbjct: 65  KIKPEDQTVQAVITTPSRELAYQIYNAAKQLNKYAPHPLTIHNYVGGTDKQHQVDQLSRK 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LD      L ++  ++ V+DEAD  LDMGF+  +  I S  P   Q +
Sbjct: 125 QPQLVIGTPGRVLDLIKSQALDIHTAKMFVVDEADMTLDMGFLHEVDQIASHFPNDLQMM 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +L+   + +++NP   E+ T +     +++  ++T  Q   +         +
Sbjct: 185 VFSATIPQKLRPFLKKYMENPVVEEIPTEAVINPDVDNWLMSTKGQDRNQLIYRLL---T 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F N K+  V L   LE QG  V  IHG ++ R R + +   ++   Q +VA
Sbjct: 242 LGEPYLALVFANTKERAVKLTQYLENQGLKVAMIHGGLEARRRKRTMRQIRDLEYQYVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+DI  V  V N D+P   E ++HR+GRTGR G  G A TL    +    D I 
Sbjct: 302 TDLAARGIDIDGVSLVINDDLPTDLEYFVHRVGRTGRNGMKGTAITLYEPAED---DLIA 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR------------- 408
           KL E+ V ++  +L +           + ++ R+ N +     G+ +             
Sbjct: 359 KLEERGVKFVPKELKNGQLVTTHDRNRRKHYKRRQNELDPSMKGYVKKTKKKVKPGYKKR 418

Query: 409 -RKKNYSSQKSHIPLKESEKISKLQQDIQEN 438
            +K     ++    L+   KI K ++  Q+ 
Sbjct: 419 IKKAIKEDEQQKRKLELRHKIRKAKRARQKQ 449


>gi|257455420|ref|ZP_05620655.1| ATP-dependent RNA helicase RhlB [Enhydrobacter aerosaccus SK60]
 gi|257447382|gb|EEV22390.1| ATP-dependent RNA helicase RhlB [Enhydrobacter aerosaccus SK60]
          Length = 391

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 118/376 (31%), Positives = 196/376 (52%), Gaps = 11/376 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
            F+ L L P +  A+   GY   TPIQ + +P  L   D  G AQTGTGKTA+F+L ++ 
Sbjct: 4   TFSQLPLHPALKQAIDQLGYQTLTPIQAQILPNTLAGQDAIGQAQTGTGKTATFLLTIIN 63

Query: 61  -------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                       G   +   R L+L PTRELA Q+  +  +  K   L    L+GG  +E
Sbjct: 64  ELLNNPLNPEIDGDRFLGETRALVLAPTRELAQQIYQDCLELTKFTELHTVCLLGGTDYE 123

Query: 114 AQNKK-LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
            Q+K+  ++  D++I TPGR++D   +  + ++ +EILV+DEADRMLDMGFIP I+ +  
Sbjct: 124 TQSKQLHQKFVDIIIATPGRLIDFCFQHHVYLDRLEILVLDEADRMLDMGFIPDIKRLIR 183

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           ++P          + T     ++  +    + I V        +     +      S K 
Sbjct: 184 MMPANTHRQTLLFSATFNQDVMNLAYRWLYQPIFVEIAPEQKTSQTIEQLFFTLMESDKL 243

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           A LQQ    +      +I    +K+ V   +    + + V  + G++ Q  R K L+ F+
Sbjct: 244 AALQQ--IIEKISPKKMIVFANRKDQVKRLYDKLNRQYKVVILSGDVIQAKREKYLAQFR 301

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +G   ++VA+D+A RG+ + DV  V N+ +P+  ++Y+HRIGRTGRAG  G + + +++ 
Sbjct: 302 QGDANILVATDVAGRGIHVDDVACVVNYTLPDSPDDYVHRIGRTGRAGNKGMSISFISEN 361

Query: 353 DIKHIDAIEKLIEKKV 368
           D  ++ AIE+ +++ +
Sbjct: 362 DGFNLPAIEQYLDESI 377


>gi|61217546|sp|Q5ZHZ0|DX39B_CHICK RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
           U2AF65-associated protein; AltName: Full=DEAD box
           protein UAP56
 gi|53136648|emb|CAG32653.1| hypothetical protein RCJMB04_32b9 [Gallus gallus]
 gi|255661416|gb|ACU25864.1| HLA-B associated protein 1 [Meleagris gallopavo]
          Length = 428

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 92/375 (24%), Positives = 164/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 47  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY  +  + V      +  + +  K    
Sbjct: 107 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLAVKKDEEVLKKNCP 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L +    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 167 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  I V+  +         +        K   L        
Sbjct: 227 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL--LDV 284

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 285 LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 344

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V   FN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 345 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 404

Query: 362 KLIEKKVDWLNGDLS 376
              E  +  L  ++ 
Sbjct: 405 DRFEVNISELPDEID 419


>gi|332305039|ref|YP_004432890.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172368|gb|AEE21622.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 459

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 140/370 (37%), Positives = 211/370 (57%), Gaps = 8/370 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ LGL P ++  +   G+ + T IQ  T+P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   EFSSLGLEPALLDNLQSMGFSQMTDIQADTLPAILSGRDVVAKAKTGSGKTAAFGLALLH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+  R RV+    L++ PTRELA QVA    + G+  +    L +  G P   Q   LE
Sbjct: 64  NLDVKRFRVQ---ALVMCPTRELAEQVALEIRRLGRAIHNIKVLTLCGGTPMGPQIGSLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRI+DH  + +L ++ +  LV+DEADRMLDMGF   +  +   VP  RQT
Sbjct: 121 HGAHIIVGTPGRIMDHLYKRRLDLSEVNTLVLDEADRMLDMGFEDEMDAVIKSVPAQRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  +S    ++P  + V +   T    +  F    A  +K  A L     
Sbjct: 181 LLFSATYPESIAAISGQVQKDPLEVTVESTHDTDSIQQVFFEVDDAHRTKATAALL---- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S    ++ I+FCN K     +  SL+  G SV A+HG+++QR R ++L  F   ++ ++V
Sbjct: 237 SHYQPESAIVFCNTKIACQEVADSLQSLGVSVLALHGDLEQRERNQVLVRFANKSVSVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI +V  V ++ +    E +IHRIGRTGRA   G A TLVA +++   +AI
Sbjct: 297 ATDVASRGLDIKEVNAVISYHITPDPEVHIHRIGRTGRAESKGVALTLVAPDEVARANAI 356

Query: 361 EKLIEKKVDW 370
           E   + K+ W
Sbjct: 357 EDYQKAKLKW 366


>gi|224088162|ref|XP_002308349.1| predicted protein [Populus trichocarpa]
 gi|222854325|gb|EEE91872.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 138/390 (35%), Positives = 206/390 (52%), Gaps = 15/390 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA++ L   V   +    YVKPTP+Q   IP++L   D+   AQTG+GKTA+F  P+  
Sbjct: 53  TFAEIDLGEAVNQNIRRCKYVKPTPVQRNAIPILLAGRDLMACAQTGSGKTAAFCFPIIA 112

Query: 60  -----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                  +      R   P  LIL PTREL+ Q+ D  +K+     + V ++ GG P   
Sbjct: 113 GIMREQYVQRPHGGRTVYPLALILSPTRELSCQIHDEAKKFAYQTGVKVVVVYGGAPVNQ 172

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
           Q ++LERG DVL+ TPGR++D   R ++ +  I  L +DEADRMLDMGF P I+     +
Sbjct: 173 QLRELERGVDVLVATPGRLVDLVERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQM 232

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQT+LFSAT   E+Q+++ +FL N   + V    S+ + I       +    +
Sbjct: 233 DMPPCGRRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVHETDKR 292

Query: 231 KCALLQQLLQSQDTMKN----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              +     Q +  +       ++F   KK   +L H L    F   +IHG+  Q+ R  
Sbjct: 293 SHLMDLLHAQRETEVNGKHSLTLVFVETKKGADSLEHWLYVNKFPATSIHGDRSQQEREM 352

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G A 
Sbjct: 353 ALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLAT 412

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
               + ++     +  L+++    +   L+
Sbjct: 413 AFFNENNLSLARPLADLMQEANQEVPAWLT 442


>gi|116181632|ref|XP_001220665.1| hypothetical protein CHGG_01444 [Chaetomium globosum CBS 148.51]
 gi|118597484|sp|Q2HEB0|PRP28_CHAGB RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|88185741|gb|EAQ93209.1| hypothetical protein CHGG_01444 [Chaetomium globosum CBS 148.51]
          Length = 705

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 125/437 (28%), Positives = 200/437 (45%), Gaps = 35/437 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A+  L  +++  V + GY +PTPIQ   IP+  Q  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 270 SWAESNLPRRLLEIVENVGYDEPTPIQRAAIPIAQQARDLIGVAVTGSGKTAAFLLPLLV 329

Query: 62  ILE-----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +          +   P  LIL PTREL  Q+     K+      TV  ++GG   E Q 
Sbjct: 330 YISELPPLTEFNKNDGPYALILAPTRELVQQIETEARKFAGPLGFTVVSIVGGHSLEEQA 389

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GA++++ TPGR++D   R  L+ +    +++DEADRM+D GF   +  I   +P 
Sbjct: 390 FALRNGAEIIVATPGRLVDCLERRLLVFSQCCYIIMDEADRMIDQGFEEPLTKILDALPV 449

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ--------- 227
             +          +L           ++  + T +      +                  
Sbjct: 450 ANEKPDTEDAENSQLMSRYLGGKDRYRQTMMYTATMPPLVEKIAKKYLRRPAIVTIGNAG 509

Query: 228 ---------------YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
                            K+   LQ++L S       I+F N K+N   +   ++  G+S 
Sbjct: 510 EAVDTVEQRVEFVSGEDKRKRRLQEILNSGQFKPPVIVFVNIKRNCEMVAKDIKSWGYST 569

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
             +HG+  Q  R   L++ + G   ++VA+DLA RG+D+ DV  V NF++P+  E Y HR
Sbjct: 570 VTLHGSKTQEQREASLASVRNGQANILVATDLAGRGIDVADVSLVVNFNMPSSIEAYTHR 629

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T +  ED   +  ++++I K        +S +   L + + AQ   
Sbjct: 630 IGRTGRAGKSGVAITFLGNEDSDVMYDLKQIISK------SSISKVPEELRRHEAAQSKP 683

Query: 393 ARKNNPIPQKSTGFDRR 409
            R        S GF  +
Sbjct: 684 TRGGGKKLDDSGGFAGK 700


>gi|302917131|ref|XP_003052376.1| hypothetical protein NECHADRAFT_1180 [Nectria haematococca mpVI
           77-13-4]
 gi|256733315|gb|EEU46663.1| hypothetical protein NECHADRAFT_1180 [Nectria haematococca mpVI
           77-13-4]
          Length = 768

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 229/464 (49%), Gaps = 27/464 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++  +   G+ KPTPIQ K+IP+ L   D+ G A TG+GKT +F++P+L 
Sbjct: 256 SFQAMSLSRPILRGLASVGFTKPTPIQSKSIPIALMGKDLVGGAVTGSGKTGAFIVPILE 315

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     ++   R ++L PTRELA Q      K     ++   L +GG+  + Q  +L  
Sbjct: 316 RLLYRPKKIPTTRVVVLTPTRELAIQCHAVATKLAAYTDIKFTLAVGGLSLKVQEAELRL 375

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EIL++DEADRML+ GF   +  I + +P +RQT
Sbjct: 376 RPDVIIATPGRFIDHMRNSASFNVDTVEILILDEADRMLEDGFADELNEILTTLPKSRQT 435

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT  + ++    +  P R+ V++   T  T+   FV       +K       + 
Sbjct: 436 MLFSATMTSTVDRLIRVGMNKPARVMVDSQKKTVGTLVQEFVRLRPGREEKRMGYLAYIC 495

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  IIF  QKK            G S   +HG+++Q  R+  +  F++G +  ++
Sbjct: 496 KTLYRERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQTQRISSVEEFRDGKVSYLL 555

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI------ 354
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G A TL A+ D       
Sbjct: 556 ATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRKGTAITLAAEPDRKVVKAA 615

Query: 355 -------------KHIDAIE-KLIEKKVDWLNGDLSSLNPPLEKIDIAQH---NHARKNN 397
                        + IDA E    + ++D ++ ++  +    ++     H      +  N
Sbjct: 616 VKAAKAQGAKVVSRAIDASEADKFQNEIDEMDDEIDEIMQEEKEEKHLAHVEMQVRKGEN 675

Query: 398 PIPQKSTGFDRRKKNYSSQ---KSHIPLKESEKISKLQQDIQEN 438
            I  ++    R K+ +      K    L   E+++ +++ +++ 
Sbjct: 676 LIEHEADIKSRPKRTWFETEHDKKKSKLAGREELNGMREGLKKK 719


>gi|115492615|ref|XP_001210935.1| hypothetical protein ATEG_00849 [Aspergillus terreus NIH2624]
 gi|121742543|sp|Q0CZN5|DRS1_ASPTN RecName: Full=ATP-dependent RNA helicase drs1
 gi|114197795|gb|EAU39495.1| hypothetical protein ATEG_00849 [Aspergillus terreus NIH2624]
          Length = 821

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 135/359 (37%), Positives = 197/359 (54%), Gaps = 1/359 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  LS  ++  +    +  PTPIQ KTIP+ L   D+ G A TG+GKTA+FV+P+L 
Sbjct: 305 SFQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILE 364

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++
Sbjct: 365 RLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKK 424

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 425 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 484

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTD + K+    L  P R+ V++  +T+ T+   FV        K       L 
Sbjct: 485 MLFSATMTDTVDKLIRVGLNRPVRLMVDSKKNTSLTLVQEFVRLRPGREDKRLGYLLYLC 544

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      I+F  QK+    +       G     +HG++ Q  R+K + NF++G +  ++
Sbjct: 545 KEIYTGRVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVENFRDGKVAFLL 604

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + A
Sbjct: 605 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKA 663


>gi|242020238|ref|XP_002430562.1| ATP-dependent RNA helicase DBP4, putative [Pediculus humanus
           corporis]
 gi|212515734|gb|EEB17824.1| ATP-dependent RNA helicase DBP4, putative [Pediculus humanus
           corporis]
          Length = 606

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 126/469 (26%), Positives = 215/469 (45%), Gaps = 23/469 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F+D  LS   +  + ++ Y+ P+ IQ ++I   LQ  DV G AQTG+GKT +F++P + 
Sbjct: 52  KFSDFPLSRSTLKGLYESNYITPSEIQRESIGYALQGEDVLGAAQTGSGKTLAFLIPVLE 111

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  K   R+     LI+ PTRELA Q+ +  +K GK+++ +  L+IGG     +  +++
Sbjct: 112 ILYCKQWTRLDGVGALIITPTRELAYQIFETLKKIGKHHDFSAGLIIGGKDLHFEKGRMD 171

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      +           N+++ILV+DEADR LD+GF   + NI   +P  RQT
Sbjct: 172 QCNIIICTPGRILHHMDENPLFDCNSMQILVLDEADRCLDLGFQETMNNIIENLPPKRQT 231

Query: 181 LLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT T  ++     +             S +              + K   +   + 
Sbjct: 232 LLFSATQTKSVKDLARLSLKNPKYVAVHEHKSHSTPESLEQSYVVCELHDKIKMIWSFIK 291

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +       +   ++   + L     + G  + A++G + Q  RMKI   F      +M
Sbjct: 292 NHKRQKILIFLSSCKQVKYIYLLFCRLRPGSPLLALYGKLHQLRRMKIYDEFCAKQNVVM 351

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD PDV  V   D P  A+ YIHR GRT R  + G++  ++   + K    
Sbjct: 352 FATDIAARGLDFPDVNWVVQLDCPEDAKTYIHRAGRTARYKKGGESLLVLLPSEEK---- 407

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH---NHARKNNPIPQKSTGFD-RRKKNYSS 415
                      ++ +LS+   P+ KI+I      + ARK   +  +        ++ + +
Sbjct: 408 ----------AMSEELSAEKIPISKIEINPKMLQSPARKIEALVARDPNLKLDAQRAFVA 457

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
               + L +++ I  ++    E  A SLG    MP     K  GK++ +
Sbjct: 458 YIKGVFLMKNKNIFNVEALNLEKYAYSLGL-AVMPRVRFLK--GKISSE 503


>gi|198452778|ref|XP_001358938.2| GA10214 [Drosophila pseudoobscura pseudoobscura]
 gi|198132073|gb|EAL28081.2| GA10214 [Drosophila pseudoobscura pseudoobscura]
          Length = 738

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 133/382 (34%), Positives = 208/382 (54%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF ++ L   V   +   GY +PTPIQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 297 DFGEVYLPEYVTKEIRRQGYKEPTPIQAQGWPIAMSGANFVGIAKTGSGKTLGYILPAIV 356

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   +   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 357 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 416

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 417 QRGCEIVIATPGRLIDFLSSGGTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 476

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--- 236
           TL++SAT   E+++++E+FL N  +I + +   +A       V    ++SK+  L     
Sbjct: 477 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVEVCDEFSKEEKLKSLLS 536

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +  + +     IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G  
Sbjct: 537 DIYDTSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 596

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + K 
Sbjct: 597 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 656

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
             A+  ++ +    +N  L +L
Sbjct: 657 AKALVDVLREANQEINPALENL 678


>gi|195144578|ref|XP_002013273.1| GL23489 [Drosophila persimilis]
 gi|194102216|gb|EDW24259.1| GL23489 [Drosophila persimilis]
          Length = 649

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 133/382 (34%), Positives = 208/382 (54%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF ++ L   V   +   GY +PTPIQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 206 DFGEVYLPEYVTKEIRRQGYKEPTPIQAQGWPIAMSGANFVGIAKTGSGKTLGYILPAIV 265

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   +   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 266 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 325

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 326 QRGCEIVIATPGRLIDFLSSGGTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 385

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--- 236
           TL++SAT   E+++++E+FL N  +I + +   +A       V    ++SK+  L     
Sbjct: 386 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVEVCDEFSKEEKLKSLLS 445

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +  + +     IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G  
Sbjct: 446 DIYDTSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 505

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + K 
Sbjct: 506 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 565

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
             A+  ++ +    +N  L +L
Sbjct: 566 AKALVDVLREANQEINPALENL 587


>gi|323493918|ref|ZP_08099035.1| ATP-dependent RNA helicase DbpA [Vibrio brasiliensis LMG 20546]
 gi|323311859|gb|EGA65006.1| ATP-dependent RNA helicase DbpA [Vibrio brasiliensis LMG 20546]
          Length = 458

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 144/418 (34%), Positives = 229/418 (54%), Gaps = 8/418 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL  +++  +   GY + TPIQ + +P+VL   DV G  +TG+GKTA+F L +L+
Sbjct: 4   SFKTLGLKTELLETLDSLGYTEMTPIQQQALPMVLSGKDVIGQGKTGSGKTATFSLGLLS 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+   TL+L PTRELA QVA       +  +    L +  G+P   Q   LE
Sbjct: 64  NLNVKRFRVQ---TLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH ++G++ ++ +  LV+DEADRMLDMGF   I  I    P  RQT
Sbjct: 121 HGAHILVGTPGRILDHMSKGRISLDELNTLVLDEADRMLDMGFEDAIDTIIEAAPAKRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + ++ ++   + NP+ ++V +   T E             +++     + L 
Sbjct: 181 LLFSATFPNNIESLAAKVMVNPEMVKVES---THEKTTIEQRFYQLNTTEERDDALEALL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++FCN KK V N+   L  +GFSV  +HG+++QR R + L+ F   +I ++V
Sbjct: 238 LTHKPESSVVFCNTKKEVQNVADELSHRGFSVVELHGDMEQREREQALTMFANKSISILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+  ++++   +  I
Sbjct: 298 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGIAFSFFSEKEAYRVARI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPL-EKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           ++ ++  +  +      +  P   K+   Q    +K         G   ++     +K
Sbjct: 358 DEYMDIAISPVQLPEKPIERPFYPKMQTIQILGGKKQKVRAGDILGALTKQAGLDGKK 415


>gi|308071203|ref|YP_003872808.1| ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
 gi|305860482|gb|ADM72270.1| Probable ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
          Length = 559

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 137/363 (37%), Positives = 210/363 (57%), Gaps = 6/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA LG+    V A+ + G   PTP+Q ++IPL+++  DV   A TGTGKT +F+LP+L 
Sbjct: 13  NFAALGVEQHWVEALKEQGISSPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQ 72

Query: 62  ILEKGRARVRMPRTLILEPTRE-LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L       R P+ L++ PTRE       +         +L++  + GG   E Q +KL+
Sbjct: 73  KLNL---DKRHPQALVIAPTRELALQITEEANRLAATEPSLSLLAVYGGQDVERQLRKLK 129

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA ++I TPGR+LDH  RG L +  I++LV+DEAD+ML MGF+  ++ I   VP+ RQT
Sbjct: 130 GGAQLIIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEVPYRRQT 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++K++  ++  P  ++V + SS    +            +        + 
Sbjct: 190 MLFSATMPAGIRKLARVYMNEPVDVKVKSASSVP--VSQIRQVVVQTTDRGKQQALVDML 247

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           + D     +IFC  K+    L   L++ GF    +HG++ Q  R +++  F+E  +QL+V
Sbjct: 248 NTDRPYLAVIFCRTKRRAAKLNEELQEMGFESGELHGDLSQNKREQVMKAFREAKLQLLV 307

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P  AE+YIHRIGRTGRAG  G A TL    D+  +  I
Sbjct: 308 ATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPELRNI 367

Query: 361 EKL 363
           +++
Sbjct: 368 QRV 370


>gi|294934696|ref|XP_002781195.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239891530|gb|EER12990.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 584

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 132/372 (35%), Positives = 193/372 (51%), Gaps = 8/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
            F        ++     AGY +PT IQ    P+ L   D+ G+AQTG+GKT +F+LP  +
Sbjct: 175 TFEQGQFPEVLMKEFEKAGYTEPTNIQKIGWPVALSGRDMVGVAQTGSGKTVAFMLPAII 234

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P  L+L PTRELA QV     ++GK   L    + GG+P   Q   L
Sbjct: 235 HVNAQAPLKHGDGPVVLVLVPTRELAMQVQAEATRFGKMAGLMNTAIFGGVPRYNQANDL 294

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG ++ I TPGR+LD    G   +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 295 RRGVEICIATPGRLLDFLETGVTNLKRVTYLVLDEADRMLDMGFEPQIRRIVSQIRPDRQ 354

Query: 180 TLLFSATMTDELQKVSENFLQN-PKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           T ++SAT   E+Q ++ +F +  P R+ V      A       V   ++  K+      L
Sbjct: 355 TTMWSATWPKEVQSMARDFCREEPIRLTVGNTQLQANPDVKQRVEVVSEMDKRQMFFDWL 414

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            ++       I+F   KK    L   +    F+  +IHG+ +QR R +IL++FK G   +
Sbjct: 415 KETYPKGSRIIVFTETKKGADALTREMRYNNFNAASIHGDKEQRERDRILNDFKTGRCNV 474

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-----AKED 353
           +VA+D+A RGLDI +V  V N+D+P   E+Y+HRIGRTGRAG  G + T +       + 
Sbjct: 475 LVATDVAQRGLDIKNVEWVVNYDMPKTVEDYVHRIGRTGRAGAVGNSLTFITNDTHTPDR 534

Query: 354 IKHIDAIEKLIE 365
           ++    I K +E
Sbjct: 535 VRMAKDIVKCME 546


>gi|194863559|ref|XP_001970500.1| GG23340 [Drosophila erecta]
 gi|190662367|gb|EDV59559.1| GG23340 [Drosophila erecta]
          Length = 782

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 145/454 (31%), Positives = 237/454 (52%), Gaps = 14/454 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP + 
Sbjct: 158 SFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLE 217

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L +      + R L+L PTREL AQV    ++  +  ++ V L IGG+  +AQ   L 
Sbjct: 218 RLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLR 277

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  D++I TPGR++DH         +++E+L++DEADRMLD  F   ++ I +    TRQ
Sbjct: 278 QNPDIVIATPGRLIDHIKNTPSFTLDSVEVLILDEADRMLDEYFAEQMKEIINSCCKTRQ 337

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM+++++ ++   L  P ++ VN     A  +   F+            +   L
Sbjct: 338 TMLFSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASL 397

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + ++F   KK    L   L   G     +HGN+ Q+ R++ L  FKE  I ++
Sbjct: 398 ICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVL 457

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  
Sbjct: 458 IATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKD 517

Query: 360 IEKLIEKK----------VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           I K  E            ++     L+SL P ++ I + +    R+     Q+ +  +R+
Sbjct: 518 IIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNI-LDEEQAERQLAKTEQQLSKTERK 576

Query: 410 KKNYSSQKS-HIPLKESEKISKLQQDIQENDADS 442
               ++++      K+  +  K +  +   D D 
Sbjct: 577 LLGQTNERRGWFQTKQQREAEKDRLALTTGDEDK 610


>gi|94400887|ref|NP_001035345.1| ATP-dependent RNA helicase vasa [Apis mellifera]
 gi|83701804|gb|ABC41341.1| vasa protein [Apis mellifera]
          Length = 630

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 202/386 (52%), Gaps = 16/386 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL   V+  +  +GY KPTP+Q   +P+++   D+   AQTG+GKTA+F +P++ 
Sbjct: 197 SFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPIIN 256

Query: 62  ILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            L +             P+ +I+ PTREL  Q+     K+  N  L   +  GG     Q
Sbjct: 257 TLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQ 316

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL  G  +L+ TPGR+LD   +G++  ++++ LV+DEADRMLDMGF+P I+ +     
Sbjct: 317 RGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHET 376

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTL+FSAT  DE+Q ++  FL N   + V         +E  F        K 
Sbjct: 377 MVPLGERQTLMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACSDVEQNFYEVARNKKKD 436

Query: 232 -CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
               + +      T+   ++F   KK    +   L +  +   +IHG+  QR R + L++
Sbjct: 437 LLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALAD 496

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G + ++VA+ +AARGLDI +V HV N+D+P   + Y+HRIGRTGR G  G+A +   
Sbjct: 497 FKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRATSFFD 556

Query: 351 KEDIKHID-AIEKLIEKK----VDWL 371
            E+   +   + +++++      DW+
Sbjct: 557 PEEDAPLRGDLVRILKQANQSVPDWM 582


>gi|195952677|ref|YP_002120967.1| DEAD/DEAH box helicase domain protein [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932289|gb|ACG56989.1| DEAD/DEAH box helicase domain protein [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 364

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 145/365 (39%), Positives = 210/365 (57%), Gaps = 9/365 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M  F+ L L  ++  A+ DAGY +PTPIQ   IPL L+ +D+ G A TGTGKT +F +P+
Sbjct: 1   MSLFSKLSL--ELQKALEDAGYKEPTPIQRDAIPLALEGYDILGQAATGTGKTGAFAIPI 58

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK- 118
           +  L+KG+  V+    L+L PTRELA QV +      K   L+  +  GG   +      
Sbjct: 59  VEKLQKGKPDVK---ALVLTPTRELAIQVKEQIYMLTKYKRLSSYVFYGGTSVKQNLDIL 115

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +  D+LI TPGRI D  +R  L ++ +E LV+DE D+MLDMGFI  I+ I S +P  R
Sbjct: 116 QNKNVDILIGTPGRIKDLIDRKALNLSKVEYLVLDEFDQMLDMGFIEDIEYIISFLPKER 175

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            T +FSAT+   ++ +++ FL++  +            IE   +   +   K        
Sbjct: 176 TTYMFSATVPSRIELLAKRFLKSDFKFVKVQSVELKPNIEEKMIKLSSPGEK--IHELMH 233

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     M+  +IF   KK+  +L   L K+G    A+HG++ QR R K LS FK G + +
Sbjct: 234 IIDTHPMEKMLIFVKTKKDAKDLFFLLTKKGIRAQALHGDLTQRQREKALSAFKSGAVSI 293

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLDI DVG V N+++P   E YIHRIGRTGR G+ GKAF+L+  ED K + 
Sbjct: 294 LIATDVAARGLDIKDVGVVINYNIPEDPELYIHRIGRTGRIGKSGKAFSLICPEDSKALW 353

Query: 359 AIEKL 363
            I+KL
Sbjct: 354 RIKKL 358


>gi|323276608|ref|NP_001190986.1| ATP-dependent RNA helicase DDX39A isoform 2 [Homo sapiens]
          Length = 470

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 166/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 89  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 148

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY  +  ++V      I  + +  K    
Sbjct: 149 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 208

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    NR   L N    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 209 HVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 268

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ +++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 269 FSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL--LDV 326

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 327 LEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 386

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 387 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 446

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 447 DRFEVNVAELPEEID 461


>gi|319400894|gb|EFV89113.1| DEAD/DEAH box helicase family protein [Staphylococcus epidermidis
           FRI909]
          Length = 448

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 122/437 (27%), Positives = 206/437 (47%), Gaps = 15/437 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV +  + KPT IQ + IP +L+  ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEHFNLDENLIEAVKNLNFEKPTEIQNRIIPRILKGTNLIGQSQTGTGKSHAFLLPLIQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEK-YGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++     ++ P+ +++ PTRELA Q+             + V L IGG   E   ++   
Sbjct: 66  IKS---DIQEPQAIVVAPTRELAQQLYQVAMHLVKFKKGIKVKLFIGGTDLEKDKQRCSH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D  + G L  +    L+IDEAD M+D+G I  + +I + +      L
Sbjct: 123 QPQLIIGTPTRINDLAHSGYLHAHLASYLIIDEADLMIDLGLIEDVDHIAARLDDENAHL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
              +    +  +   N   +          +  +     ++      +K    L+ +   
Sbjct: 183 AVFSATIPKSLQPFLNKYLSQPEFVEVDGKAHNKENIEFYLIPTKGSAKVDKTLELIDIL 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   IIFCN ++N   L  +L K+G  +  IHG +  R R + +   +    Q ++A
Sbjct: 243 NPYLC--IIFCNSRENADELADTLNKEGIKIGMIHGGLTPRERKQQMKRIRNLDFQFVIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  IE
Sbjct: 301 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEESNITLIE 360

Query: 362 K--LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN---NPIPQKSTGFDRRKKNYSSQ 416
                 K VD  NG+L     P++  ++ +    + +   N +  K     +RK     +
Sbjct: 361 DRGYKFKNVDIKNGEL----KPIKAHNMRRSRQRKDDHLTNEVKHKVRSKSKRKVKPGYK 416

Query: 417 KSHIPLKESEKISKLQQ 433
           K      E  K  + +Q
Sbjct: 417 KKFKQEVEKMKRQERKQ 433


>gi|297703839|ref|XP_002828834.1| PREDICTED: ATP-dependent RNA helicase DDX39-like isoform 2 [Pongo
           abelii]
          Length = 483

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 166/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 102 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 161

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY  +  ++V      I  + +  K    
Sbjct: 162 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 221

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    NR   L N    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 222 HVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 281

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ +++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 282 FSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL--LDV 339

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 340 LEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 399

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 400 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 459

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 460 DRFEVNVAELPEEID 474


>gi|254195234|ref|ZP_04901662.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei S13]
 gi|169651981|gb|EDS84674.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei S13]
          Length = 465

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 150/405 (37%), Positives = 221/405 (54%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 10  FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + L+L PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 70  LDT---RRFDVQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL++PKR+++      ++         Y     +      LL +
Sbjct: 187 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKI----RQRFYEVTEDERLHAVGLLLN 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 243 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E Y+HRIGRTGRA + G A +L +  ++  +  IE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 362

Query: 362 KLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           + + ++V+W        G  + L PP+E + I      RK+   P
Sbjct: 363 QALAREVEWHPLAELKAGGDAPLLPPMETLQIL---GGRKDKIRP 404


>gi|21040371|ref|NP_005795.2| ATP-dependent RNA helicase DDX39A isoform 1 [Homo sapiens]
 gi|301601639|ref|NP_001180420.1| ATP-dependent RNA helicase DDX39 [Macaca mulatta]
 gi|297703837|ref|XP_002828833.1| PREDICTED: ATP-dependent RNA helicase DDX39-like isoform 1 [Pongo
           abelii]
 gi|61212932|sp|O00148|DX39A_HUMAN RecName: Full=ATP-dependent RNA helicase DDX39A; AltName: Full=DEAD
           box protein 39; AltName: Full=Nuclear RNA helicase URH49
 gi|12654373|gb|AAH01009.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Homo sapiens]
 gi|119604824|gb|EAW84418.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, isoform CRA_d [Homo
           sapiens]
 gi|123980968|gb|ABM82313.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [synthetic construct]
 gi|123995775|gb|ABM85489.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [synthetic construct]
          Length = 427

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 166/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY  +  ++V      I  + +  K    
Sbjct: 106 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    NR   L N    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 166 HVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ +++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRFEVNVAELPEEID 418


>gi|10439505|dbj|BAB15509.1| unnamed protein product [Homo sapiens]
          Length = 461

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 166/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 80  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 139

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY  +  ++V      I  + +  K    
Sbjct: 140 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 199

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    NR   L N    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 200 HVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 259

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ +++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 260 FSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL--LDV 317

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 318 LEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 377

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 378 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 437

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 438 DRFEVNVAELPEEID 452


>gi|156391127|ref|XP_001635620.1| predicted protein [Nematostella vectensis]
 gi|156222716|gb|EDO43557.1| predicted protein [Nematostella vectensis]
          Length = 518

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 135/380 (35%), Positives = 207/380 (54%), Gaps = 3/380 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           + FA  G   +++ ++    Y +PT IQ + +P+ L   D+ GIA+TG+GKTA+F+ P  
Sbjct: 106 ISFAHFGFDEQMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPAL 165

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
              + +        P  LI  PTREL  Q+     ++GK YN+ V  + GG     Q+K 
Sbjct: 166 VHIMDQPELQVGDGPIVLICAPTRELCQQIYTEARRFGKAYNIHVVAVFGGGNKYEQSKA 225

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ GA++++ TPGR++DH       ++ +  LV DEADRM DMGF P +++I + V   R
Sbjct: 226 LQEGAEIVVATPGRLIDHVKAKATNLHRVTYLVFDEADRMFDMGFEPQVRSIANNVRPDR 285

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT   +++ +  + L +P R+ +       E +        +  SK   L  Q 
Sbjct: 286 QTLLFSATFKKKVEHLCRDILVDPVRVVIGELGEANEDVTQIVHIFNSMPSKWEWLT-QN 344

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L S  +  + +IF  +K N   L  +L K  F V  +HG++DQ  R K+L  FK+  I +
Sbjct: 345 LVSFASAGSVLIFVTKKLNSEELATNLRKNDFEVALLHGDMDQFERSKVLGQFKKREIPI 404

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIP +  V N+DV      + HRIGRTGRAG  G A+TL+ + D     
Sbjct: 405 LVATDVAARGLDIPSIKTVINYDVARDITTHTHRIGRTGRAGEKGNAYTLLTQSDQNFAG 464

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + + +E     +   L +L
Sbjct: 465 DLVRNLEIANQVVPESLMAL 484


>gi|194227730|ref|XP_001492319.2| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX53
           (DEAD box protein 53) (DEAD box protein CAGE)
           (Cancer-associated gene protein) (Cancer/testis antigen
           26) (CT26) [Equus caballus]
          Length = 624

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 137/400 (34%), Positives = 216/400 (54%), Gaps = 6/400 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI---LEKG 66
           P+V+ ++  AG+ +PTPIQ +  P+VLQ  D+ G+AQTGTGKT S+++P           
Sbjct: 227 PEVLKSIKKAGFQRPTPIQSQAWPIVLQGMDLIGVAQTGTGKTLSYLIPGFIHLDSQPIS 286

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R     P  L+L PTRELA QV     KY     L    + GG   + Q + + +G D++
Sbjct: 287 REERNGPGMLVLTPTRELALQVEAECSKYSYK-GLKSVCVYGGGNRKEQIQHITKGVDII 345

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + +I  LV+DEAD+MLD+GF   I  I   V   RQT++ SAT
Sbjct: 346 IATPGRLNDLQMNKCVNLRSITYLVLDEADKMLDLGFEGQITKILLDVRPDRQTVMTSAT 405

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
               +++++ ++L+ P  + V T    A       +    +  K   L+Q+ L++     
Sbjct: 406 WPHTIRQLARSYLKEPMIVYVGTLDLVAVHTVKQDIIVTTEEEK-RTLIQEFLRNLAPED 464

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             IIF ++K    +L   L  QG  V ++HGN +Q  R + L +F+ G +++++A+DLAA
Sbjct: 465 KAIIFVSRKLVADDLSSDLSIQGVPVQSLHGNREQFDREQALDDFRSGRVKILIATDLAA 524

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLD+ DV HV+N+D P   E Y+HR+GRTGRAG+ G + TL+ + D K    + K++E+
Sbjct: 525 RGLDVRDVTHVYNYDSPKNLEEYVHRVGRTGRAGKTGVSVTLMTQADWKIATELIKILER 584

Query: 367 KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
               +  DL  +     K+   + +          K+  F
Sbjct: 585 ANQSVPEDLLKMAEQC-KLQKGKKDSGNGARNPQGKAKQF 623


>gi|171677075|ref|XP_001903489.1| hypothetical protein [Podospora anserina S mat+]
 gi|170936605|emb|CAP61264.1| unnamed protein product [Podospora anserina S mat+]
          Length = 580

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 119/390 (30%), Positives = 197/390 (50%), Gaps = 7/390 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA L LS + + A+ + G+ K T IQ + IP +L   DV G A+TG+GKT +F++P + 
Sbjct: 97  DFAQLNLSERTMKAIEEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 156

Query: 62  ILEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + R    +I+  PTRELA Q+     +  K+++ T  + IGG    A+  KL 
Sbjct: 157 MLHSLRFKPRNGTGVIVVTPTRELALQIFGVARELMKHHSQTYGVCIGGANRRAEADKLG 216

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G ++LI TPGR+LDH      +  N++ L+IDEADR+L++GF   ++ I  ++P   + 
Sbjct: 217 KGVNLLIATPGRLLDHLQNTPFVFKNLKSLIIDEADRILEIGFEDEMRQIVKILPKDERQ 276

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSAT T +++ ++   L+               T+E          + K  LL    
Sbjct: 277 TMLFSATQTTKVEDLARISLRPGPLYINVDEEKQYSTVEGVDQGYVIVDADKRFLLLFSF 336

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             + + K  I+F +   +V      L+     V  +HG   Q+ R      F   T   +
Sbjct: 337 LKKMSKKKVIVFFSSCNSVKYYSELLQYIDLPVLDLHGKQKQQKRTNTFFEFCNATQGTL 396

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHID 358
           + +D+AARGLDIP V  +  FD P+   +YIHR+GRT R     G++   +   ++  + 
Sbjct: 397 ICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGNNTKGRSLLFLQPCELGFLA 456

Query: 359 AIEKLIEKKV---DWLNGDLSSLNPPLEKI 385
            + K  +  V   D+    + ++   LEK+
Sbjct: 457 HL-KAAKVPVVEYDFPKNKILNVQSQLEKL 485


>gi|147774689|emb|CAN74342.1| hypothetical protein VITISV_005473 [Vitis vinifera]
          Length = 661

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 122/407 (29%), Positives = 192/407 (47%), Gaps = 16/407 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  LSP+++ AV  AGY  P+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPMLT
Sbjct: 260 SWVESKLSPELLKAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLT 319

Query: 62  I-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                           P  +++ PTRELA Q+ D   K+     + V  ++         
Sbjct: 320 YISRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVVIATPGRLI 379

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             LER   VL      +LD  +R   +    +++ + +A                     
Sbjct: 380 DCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDA-MPSSNLKPENEDEELDEKKI 438

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R T +FSATM   +++++  +L+NP  + + T     + I    +              
Sbjct: 439 YRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQHVIMVKGSEK---MPKL 495

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q L  +   K  I+F N KK+   L   L+K G+ V  +HG   Q  R   L  F+    
Sbjct: 496 QKLLDELGDKTAIVFINTKKSTDTLAKGLDKAGYRVTTLHGGKSQEQREISLEGFRTKRY 555

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+A RG+DIPDV HV N+D+P   E Y HRIGRTGRAG+ G A T +   D   
Sbjct: 556 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDSDV 615

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
              +++++ +         S + P L + + ++       +  P+++
Sbjct: 616 FYDLKQMLIQS-------NSPVPPELARHEASKFKPGSIPDRPPRRN 655


>gi|311278491|ref|YP_003940722.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308747686|gb|ADO47438.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
          Length = 444

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 139/395 (35%), Positives = 213/395 (53%), Gaps = 4/395 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ A+ D G+ +PT IQ   IP  L+  DV G A TGTGKTA+++LP + 
Sbjct: 5   TFSELELDESLLDALQDKGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLD+GF   I++I+    + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDLGFAQDIEHISGETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+  +  K     L         TPS+  E  +       A   +    L + L 
Sbjct: 185 MLFSATLEGDAIKDFAERLLEDPVEVSATPSTR-ERKKIHQWYYRADNFEHKLELLKHLL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD +   I+F  +++ V  +   L   G + C + G + Q  R++ +    +G + +++
Sbjct: 244 KQDDVTRSIVFVRKRERVHEMAELLRAAGINNCYLEGEMAQAKRVEGIKRLTDGRVNVLI 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DIPDV HVFNFD+P   + Y+HRIGRTGRAGR G A +LV   D   +  I
Sbjct: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLLMKI 363

Query: 361 EKLIEKKVDWLNGDL--SSLNPPLEKIDIAQHNHA 393
            + IE+ +     D       PP EK+       A
Sbjct: 364 GRYIEEPLKPRVIDELRPVTRPPSEKMTGKPSKKA 398


>gi|70949030|ref|XP_743963.1| snrnp protein [Plasmodium chabaudi chabaudi]
 gi|56523710|emb|CAH74477.1| snrnp protein, putative [Plasmodium chabaudi chabaudi]
          Length = 667

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 116/401 (28%), Positives = 189/401 (47%), Gaps = 25/401 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  LS  ++ A+  A Y KPTPIQ++ IP+ L+  D+ GIA+TG+GKTA+FVLPML+
Sbjct: 244 KWEESNLSSDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLS 303

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +++            P  LI+ P+RELA Q+ +   K+    +     ++GG   EAQ 
Sbjct: 304 YVKQLPPLTYETSQDGPYALIIAPSRELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQA 363

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT----- 171
            +L RG +++I TPGR+ D   +   ++N    ++IDEADRM+DMGF   +  I      
Sbjct: 364 FELRRGVEIVIGTPGRLQDCLEKAYTVLNQCNYVIIDEADRMMDMGFEDAVHFILDNIPT 423

Query: 172 ---------------SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
                           +     +    +   +  +    E   +   R            
Sbjct: 424 SNLKSEDDALALQEEMMAKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGA 483

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
            +          ++     +     +      I+F NQKK    +  S+ K  F   A+H
Sbjct: 484 GKRSIEQKLEFITEGKKKQKLQELLEIYEPPIIVFVNQKKVADIIAKSISKMKFKAIALH 543

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G   Q  R + L+ FK G   ++VA+D+A RG+D+  V  V NFD+P    +Y HRIGRT
Sbjct: 544 GGKVQEMREEALNAFKNGEFDILVATDVAGRGIDVHGVKLVINFDLPKDIASYTHRIGRT 603

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
           GRAG  G A + V ++D      + + +    + +  +L++
Sbjct: 604 GRAGMKGLAISFVTEQDTHLFYDLRQFLISSNNIVPLELAN 644


>gi|82539888|ref|XP_724299.1| U5 snRNP 100 kD protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23478899|gb|EAA15864.1| U5 snRNP 100 kD protein [Plasmodium yoelii yoelii]
          Length = 967

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 117/401 (29%), Positives = 189/401 (47%), Gaps = 25/401 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  LS  ++ A+  A Y KPTPIQ++ IP+ L+  D+ GIA+TG+GKTA+FVLPML+
Sbjct: 544 KWEESNLSSDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLS 603

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +++            P  LI+ P+RELA Q+ D   K+    +     ++GG   EAQ 
Sbjct: 604 YVKQLPPLTYETSQDGPYALIIAPSRELAIQIYDETNKFASYCSCRTVAVVGGRNAEAQA 663

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT----- 171
            +L RG +++I TPGR+ D   +   ++N    ++IDEADRM+DMGF   +  I      
Sbjct: 664 FELRRGVEIVIGTPGRLQDCLEKAYTVLNQCNYVIIDEADRMMDMGFEDAVHFILDNIPT 723

Query: 172 ---------------SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
                           +     +    +   +  +    E   +   R            
Sbjct: 724 SNLKSEDDALALQEEMMAKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGA 783

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
            +          ++     +     +      I+F NQKK    +  S+ K  F   A+H
Sbjct: 784 GKRSIEQKLEFITEGKKKQKLQELLEIYEPPIIVFVNQKKVADIIAKSISKMKFRAIALH 843

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G   Q  R + L+ FK G   ++VA+D+A RG+D+  V  V NFD+P    +Y HRIGRT
Sbjct: 844 GGKVQEMREEALNAFKNGEFDILVATDVAGRGIDVHGVKLVINFDLPKDIASYTHRIGRT 903

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
           GRAG  G A + V ++D      + + +    + +  +L++
Sbjct: 904 GRAGMKGLAISFVTEQDTHLFYDLRQFLISSNNIVPLELAN 944


>gi|322818320|gb|EFZ25769.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 631

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 113/376 (30%), Positives = 186/376 (49%), Gaps = 10/376 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
            FA +     +   V    Y KPTP+Q   IP+VL  HD+   AQTG+GKTA++++P++ 
Sbjct: 132 SFASMNTPMALKENVARCRYQKPTPVQKYGIPVVLCGHDLMACAQTGSGKTAAYLIPLVS 191

Query: 61  ------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                 T   +G+     P  L++ PTREL+ Q+ +   K+     +   ++ GG     
Sbjct: 192 SILSNVTPNHQGQGSRSSPAALVMAPTRELSIQIHEEGRKFTYRTGIRCVVVYGGADPRH 251

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  +L RG  +L+ TPGR+ D F RG +  ++I  +V+DEADRMLDMGF P I+ I    
Sbjct: 252 QVHELSRGCGLLVATPGRLWDVFTRGYVTFSSIRFMVLDEADRMLDMGFEPQIRMIVQGQ 311

Query: 175 PFTRQTLLFSA---TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                                ++ +   +   R           T E+            
Sbjct: 312 ESDMPPPGQRQTLLYSATFPTEIQQLAREFLHRHYFLQVGRVGSTTENITQDVRWVEDND 371

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                  +  ++  +  ++F  +K++   L   L     +  +IHG+  QR R + L  F
Sbjct: 372 KREHLLRILHENQNQLILVFVEKKRDADYLERFLRNNRVACASIHGDRVQREREEALKMF 431

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K  + Q++VA+D+A+RGLDIPDV  V  +D+P+  ++Y+HRIGRTGRAG+ G+A +   +
Sbjct: 432 KSASCQVLVATDVASRGLDIPDVSIVIQYDMPSNIDDYVHRIGRTGRAGKVGRAISFFNE 491

Query: 352 EDIKHIDAIEKLIEKK 367
           ++   +D +  L+ + 
Sbjct: 492 KNRNIVDDLVPLLNET 507


>gi|224476666|ref|YP_002634272.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421273|emb|CAL28087.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 446

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 133/445 (29%), Positives = 212/445 (47%), Gaps = 14/445 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL PK++ AV D  + +PT IQ + IP +L+   + G +QTGTGK+ +F+LP++  
Sbjct: 7   FEQFGLDPKLIDAVSDLNFNQPTEIQQRVIPKILKGTSIIGQSQTGTGKSHAFLLPLIER 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121
           ++        P+ +++ PTRELA Q+    +       ++ V+L IGG  FE   ++   
Sbjct: 67  IDPSIQE---PQAIVVAPTRELAQQLYKAAQHLTEFKKDVKVSLFIGGTDFERDKQRCNV 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L  +    LV+DEAD M+D+G I  + +I + +       
Sbjct: 124 QPQLVIGTPTRINDLSKDGTLHAHLANYLVVDEADLMIDLGLIEDVDHIAARLEDNANIA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+   L      +L  P+ IEVN+ +   + I+   + T            + L  
Sbjct: 184 VFSATIPKSLHPFLNKYLNQPELIEVNSKTQNKKNIDFYLIPTKGAAK---VDKTKALID 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFCN +++   L   L   G  +  IHG +  R R + +   +    Q ++A
Sbjct: 241 ILNPYLCIIFCNSRESADELAEELIADGLKIGMIHGGLSPRERKQQMKRIRNLDFQFVIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVP   + + HR+GRTGR    G+AFTL   ++ + +  IE
Sbjct: 301 SDLASRGIDIEGVSHVINFDVPKDIDFFTHRVGRTGRGQYKGEAFTLFTPDEEELVGEIE 360

Query: 362 K--LIEKKVDWLNGDLSSLN-----PPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                 K VD  NG++  +          K D       ++      K       KK + 
Sbjct: 361 DRGYQFKDVDLKNGEIKPIKAHNTRKTRTKKDDHLTTQVKRKIKRGNKKKVKPGYKKKFK 420

Query: 415 SQKSHIPLKESEKISKLQQDIQEND 439
            +   +  KE ++ SK +   Q  +
Sbjct: 421 RELEDLKRKERKQYSKRKNREQRKN 445


>gi|327266482|ref|XP_003218034.1| PREDICTED: spliceosome RNA helicase BAT1-like [Anolis carolinensis]
          Length = 428

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 93/375 (24%), Positives = 164/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 47  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY  +  + V      I  + +  K    
Sbjct: 107 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCP 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L +    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 167 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  I V+  +         +        K   L        
Sbjct: 227 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL--LDV 284

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 285 LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 344

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V   FN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 345 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQ 404

Query: 362 KLIEKKVDWLNGDLS 376
              E  +  L  ++ 
Sbjct: 405 DRFEVNISELPDEID 419


>gi|309359591|emb|CAP32649.2| hypothetical protein CBG_13909 [Caenorhabditis briggsae AF16]
          Length = 835

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 115/379 (30%), Positives = 192/379 (50%), Gaps = 13/379 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +  LGL   +  A+   G+ +PTPIQ KTIP ++   DV  +++TG+GKTA+FV+PML  
Sbjct: 26  WQQLGLDHTIFKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +    R L++ PTRELA Q     ++ G+   L  A L+GG   E Q   +   
Sbjct: 86  LKGRDTKG--IRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDVLEDQFSTIHEN 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+L       L +  ++ +V DEADR+ +MGF   +      +P +RQTLL
Sbjct: 144 PDILLATPGRLLHVIVEMDLRLQFVQYVVFDEADRLFEMGFQDQLTETLKRIPESRQTLL 203

Query: 183 FSATMTDELQKVSENFLQNPKRIE-----------VNTPSSTAETIEHCFVATYAQYSKK 231
           FSAT+   L   ++  L +P  +                       +    +  A++ K 
Sbjct: 204 FSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPDEKLSRCSICAEFGKF 263

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                   +     K  ++FC   K+V  +   L + G     ++  +D  +R + +  F
Sbjct: 264 RKSENFETRMDRENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKQNIQKF 323

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
            E    ++V +D+AARG+DIP +  V N   P++A+ Y+HR+GR  RAGR G A +L+A 
Sbjct: 324 HEKQNNILVVTDVAARGVDIPLLDTVINLHFPSKAKLYVHRVGRVARAGRSGTAISLIAN 383

Query: 352 EDIKHIDAIEKLIEKKVDW 370
           +++ ++  +   + K + +
Sbjct: 384 DELPYLTDLFMFLGKPIKF 402


>gi|194747363|ref|XP_001956121.1| GF24750 [Drosophila ananassae]
 gi|190623403|gb|EDV38927.1| GF24750 [Drosophila ananassae]
          Length = 613

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 129/382 (33%), Positives = 204/382 (53%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
            F ++      +  +    Y +PTPIQ +  P+ +  H++ GIA+TG+GKT +F+LP  +
Sbjct: 117 SFDEVCFPDYCMNEIRRQRYTEPTPIQAQAWPIAMSGHNMVGIAKTGSGKTLAFILPAIL 176

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               ++   R   P  L+L PTRELA Q+      +G +  +    + GG P   Q   L
Sbjct: 177 HINGQQPLQRGDGPIALVLAPTRELAQQIQSVANDFGSSAYVRNTCIFGGAPRSRQANDL 236

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG  ++I TPGR+LD    G   +     LV+DEADRMLDMGF   I+ I   +   RQ
Sbjct: 237 ERGVQIVIATPGRLLDFLQGGATNLKRCTYLVLDEADRMLDMGFEQQIRKILGQIRPDRQ 296

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--- 236
            L++SAT   E++K++E+FL N  +I + +   +A      FV   A++ K   L     
Sbjct: 297 ILMWSATWPKEVRKLAEDFLGNYIQINIGSLELSANHNIRQFVEVCAEHEKGGKLKDLLS 356

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +     +    IIF   KK V  L   +   G  V +IHG+  Q  R  +L++F+ G  
Sbjct: 357 HIYDQSTSPGKIIIFVATKKKVDELARFINAFGVGVGSIHGDKSQMDRDSVLNDFRNGRH 416

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + +V NFD P  +E+Y+HRIGRTGR    G ++    +++ K 
Sbjct: 417 NILVATDVAARGLDVDGIKYVINFDFPQSSEDYVHRIGRTGRKHSTGTSYAFFTRKNAKC 476

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
             A+ +++ +    +N +L S+
Sbjct: 477 ARALIEILREANQNVNPELESM 498


>gi|71421857|ref|XP_811932.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70876653|gb|EAN90081.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 631

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 114/376 (30%), Positives = 186/376 (49%), Gaps = 10/376 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
            FA +     +   V    Y KPTP+Q   IP+VL  HD+   AQTG+GKTA++++P++ 
Sbjct: 132 SFASMNTPLALKENVARCRYQKPTPVQKYGIPVVLCGHDLMACAQTGSGKTAAYLIPLVS 191

Query: 61  ------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                 T   +G+     P  L++ PTREL+ Q+ +   K+     +   ++ GG     
Sbjct: 192 SILSNATPNHQGQGSRSSPAALVMAPTRELSIQIHEEGRKFTYRTGIRCVVVYGGADPRH 251

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  +L RG  +L+ TPGR+ D F RG +  ++I  +V+DEADRMLDMGF P I+ I    
Sbjct: 252 QVHELSRGCGLLVATPGRLWDVFTRGYVTFSSIRFMVLDEADRMLDMGFEPQIRMIVQGQ 311

Query: 175 PFTRQTLLFSA---TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                                ++ +   +   R           T E+            
Sbjct: 312 ESDMPPPGQRQTLLYSATFPTEIQQLAREFLHRHYFLQVGRVGSTTENITQDVRWVEDND 371

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                  L  ++  +  ++F  +K++   L   L     +  +IHG+  QR R + L  F
Sbjct: 372 KREHLLRLLHENQNQLILVFVEKKRDADYLERFLRNNRVACASIHGDRVQREREEALKMF 431

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K  + Q++VA+D+A+RGLDIPDV  V  +D+P+  ++Y+HRIGRTGRAG+ G+A +   +
Sbjct: 432 KSASCQVLVATDVASRGLDIPDVSIVIQYDMPSNIDDYVHRIGRTGRAGKVGRAISFFNE 491

Query: 352 EDIKHIDAIEKLIEKK 367
           ++   +D +  L+ + 
Sbjct: 492 KNRNIVDDLVPLLNET 507


>gi|256088516|ref|XP_002580378.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665945|emb|CAZ36617.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 959

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 114/402 (28%), Positives = 203/402 (50%), Gaps = 13/402 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L   ++  + + G+  P+PIQ  +IP+ L   D+   A+ GTGKT ++ +P+L 
Sbjct: 552 SFEDFCLKRDILKGIYEKGWESPSPIQESSIPIALTHRDIMARAKNGTGKTGAYSVPVLE 611

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +++     IL PTRELA Q +    +  K+  + + L+IGG   +    +L +
Sbjct: 612 SIDTTINKIQAI---ILVPTRELALQTSQICIELAKHTAIKIMLVIGGTLLKDDLIRLSQ 668

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VLI TPGR++D  +RG + ++  +I+V+DEAD++L    I  ++ I + V  +RQ L
Sbjct: 669 TVHVLIGTPGRLVDLLSRGLIDISKCKIVVLDEADKLLSEELISGVEEILNGVDKSRQVL 728

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           ++SAT    +Q     F+    R           T++           K        L S
Sbjct: 729 VYSATYPVTVQS----FMNQHLRNPYQINLMETLTLKGITEYYAYVQEKHKVHCLNTLFS 784

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFC+  + V  L   + + G+S   IH  + Q+ R ++  +F+ G  + +V 
Sbjct: 785 KLQISQSIIFCSSAQRVELLAKKITQLGYSCYYIHARMSQQDRNRVFHDFRNGCCRNLVC 844

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DIP V  V NFD P  +E Y+HRIGR+GR G  G A  LV   D   +  +E
Sbjct: 845 TDLLTRGIDIPTVNVVINFDFPKYSETYLHRIGRSGRFGHLGIAINLVTYADRYSLKTVE 904

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
             +  ++  +  ++       +++ +A++ +    +P+ +++
Sbjct: 905 TELVTEIKPIPKEID------KRLYVAEYQNENNLDPMTREA 940


>gi|167625028|ref|YP_001675322.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167355050|gb|ABZ77663.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 437

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 153/403 (37%), Positives = 240/403 (59%), Gaps = 12/403 (2%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-----MLTILEKGRARV 70
           V   GY +PT IQ + IP +L   D+   AQTGTGKTA+F LP     +       +++ 
Sbjct: 40  VAQKGYQQPTAIQAEAIPAILAGRDIMASAQTGTGKTAAFTLPLLQRLIDKSSSDEQSKA 99

Query: 71  RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130
           +    L+L PTRELA QV  N  +Y  N +++  ++ GG+  +AQ  KL  G DV++ TP
Sbjct: 100 KRASVLVLAPTRELAVQVNTNVSQYAVNTDVSSIVIYGGVSIDAQATKLAAGVDVIVATP 159

Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190
           GR+LDH  RG L +++IE LV DEADRMLDMGF+  I  I   +P  RQTLLFSAT +  
Sbjct: 160 GRLLDHVRRGTLNLSDIEYLVFDEADRMLDMGFMDEINAILKQLPAKRQTLLFSATFSSA 219

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGII 250
           + ++S+  LQ P RIEV+  +S A +IE    A  ++   +         ++   +  ++
Sbjct: 220 IFELSKKLLQKPLRIEVDKANSAANSIEQVVYAVDSERKTELLCHL---INKSAWQQVLV 276

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F  +K+    +   +   G    A HG++ Q +R ++L++FK+G I+ +VA+D+AARGLD
Sbjct: 277 FSRKKQTADLIAQKMLAAGIEAKAFHGDLGQGAREQVLNDFKQGKIKALVATDVAARGLD 336

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV-- 368
           I ++  V N+++P  AE+Y+HRIGRTGRAG  GKA TL +++D   ++ +E +I+K++  
Sbjct: 337 IVELKVVVNYEIPFVAEDYVHRIGRTGRAGNTGKAITLYSEDDALLLEEVESVIDKRLPQ 396

Query: 369 DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            WL G    L   LE +   +++ A +     +++ G D+R++
Sbjct: 397 QWLEGFEPDLTK-LEPV-TRKNSKAAQRQRAKKRALGADKRRR 437


>gi|317025749|ref|XP_001389716.2| ATP-dependent RNA helicase drs1 [Aspergillus niger CBS 513.88]
          Length = 827

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 158/486 (32%), Positives = 236/486 (48%), Gaps = 31/486 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  LS  ++  +    +  PTPIQ KTIP+ L   D+ G A TG+GKTA+FV+P+L 
Sbjct: 310 SFQEFNLSRPILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILE 369

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++
Sbjct: 370 RLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKK 429

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 430 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 489

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTD + K+    L  P R+ V+   +TA T+   FV        K       L 
Sbjct: 490 MLFSATMTDTVDKLIRVGLNRPVRLMVDAKKNTAVTLVQEFVRLRPGREDKRLGYLLYLC 549

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      I+F  QKK    +       G     +HG++ Q  R+K + NF+EG    ++
Sbjct: 550 KEIYTGRVIVFFRQKKEAHRVRIIFGLLGLKAAELHGSMSQEQRIKSVENFREGKAAFLL 609

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + A 
Sbjct: 610 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAA 669

Query: 361 EK------------LIE--------KKVDWLNGDLSSL--NPPLEK-IDIAQHNHARKNN 397
            K            +IE         K + L  ++  +     LEK +  A+    +  N
Sbjct: 670 VKAGKSQGAKIASRVIEPAVADSWAAKAEELADEVEEVLSEEKLEKQLAQAEMQVTKGEN 729

Query: 398 PIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
            I  ++    R K+ +          E +K +  +    E +    G        +  K+
Sbjct: 730 LIKHEAEIKSRPKRTWFE-------TERDKKAARKLGAAELNGPDAGMSKKEKQKLSNKD 782

Query: 458 RGKLND 463
           + +L+D
Sbjct: 783 KKRLDD 788


>gi|290987818|ref|XP_002676619.1| predicted protein [Naegleria gruberi]
 gi|284090222|gb|EFC43875.1| predicted protein [Naegleria gruberi]
          Length = 493

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 127/399 (31%), Positives = 213/399 (53%), Gaps = 11/399 (2%)

Query: 2   DFADLGLSP-KVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            + +  L P +++ A+ D  + +PT +Q + IP+ +   D+ G+A+TG+GKTAS+++PM 
Sbjct: 88  SWDETTLLPLEIINAITDLKFKEPTAVQKQCIPIAMNGIDLVGLAETGSGKTASYIIPMC 147

Query: 61  TI-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                            P  LIL PTRELA Q+     KY + +   V  +IGG+  E Q
Sbjct: 148 CQIAKLPRMNDEIAKDGPYGLILVPTRELAEQIEREATKYARQFEFRVQAIIGGVSIEKQ 207

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           ++ +  G ++L+ TPGR++D  N   +++N    +V+DEAD+M++M F   +  I   +P
Sbjct: 208 SRLIRGGCEILVATPGRLIDCLNNSIVVLNQCHFIVLDEADKMIEMNFEKDVNTILENMP 267

Query: 176 FTRQT--LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
              Q   +LFSATM  E++ ++  +L+    + V       E IE   +    + +K+  
Sbjct: 268 THIQRQTMLFSATMPPEVENIAMKYLKKRVTVAVGEVGRAVERIEQEVMWIKHENAKRDK 327

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL+ L  +   +   I+FCN KK V  +   +   GF   +IHGN  Q +R   L  FK 
Sbjct: 328 LLELLYDADPPV---IVFCNLKKEVDAIAKFVSNAGFRSTSIHGNKSQEARNSALEAFKS 384

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+D+  RG+DI  V  V N+ +P     Y HRIGRTGRAGR G+A + + K+D
Sbjct: 385 GKFDVIVATDVLGRGIDISGVTLVVNYSLPKTISAYTHRIGRTGRAGRTGRAVSFLTKDD 444

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
            + +  ++K++E   + +  +L+      +K D  + + 
Sbjct: 445 TEIMYDLKKMLESTKNTVPEELAQHPSAAQKPDKKKSDQ 483


>gi|308497408|ref|XP_003110891.1| CRE-DDX-23 protein [Caenorhabditis remanei]
 gi|308242771|gb|EFO86723.1| CRE-DDX-23 protein [Caenorhabditis remanei]
          Length = 766

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 142/444 (31%), Positives = 223/444 (50%), Gaps = 45/444 (10%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + G   +V  AV + GY++PTPIQ + IP+ LQ  DV G+A+TG+GKTA+F+LP+L 
Sbjct: 327 NWEEAGFPSEVYQAVKEIGYMEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLV 386

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +E+   R   P  +I+ PTRELA Q+ +   K+GK  ++    +IGG   E Q
Sbjct: 387 WITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLDIKTVSVIGGASREEQ 446

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-- 173
             KL  G +V+I TPGR+LD      LL+N    +++DEADRMLDMGF P +Q +     
Sbjct: 447 GMKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYLP 506

Query: 174 -----------------------VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
                                      RQT++F+ATM+  +++++  +L+ P  + + + 
Sbjct: 507 ASNMKKDTDEFDNEEALMKGFQTRQKYRQTVMFTATMSPAIERLARQYLRRPAVVHIGSA 566

Query: 211 SSTAETIEHCFVATYAQY--------SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLC 262
               E +E      Y  +         KK  L+  L+   D      +   +  +V+   
Sbjct: 567 GKPTERVEQVCFFAYFIFIVYMVTSERKKKKLIDILMVETDRPIIIFVNQKRGADVLAKG 626

Query: 263 HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322
                  F    +HG   Q +R   L + K G  +++VA+D+A RG+DI DV  V N+D+
Sbjct: 627 LVSVNPEFRASVLHGGKGQEAREYALQSLKSGESKILVATDVAGRGIDIKDVALVINYDM 686

Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPL 382
               E+Y HRIGRTGRAG+HGKA T + ++D      +++++      L   +SS  P L
Sbjct: 687 AKTIEDYTHRIGRTGRAGKHGKAITFLTQDDTAVFYDLKQVL------LESPVSSCPPEL 740

Query: 383 EKIDIAQHNHARKNNPIPQKSTGF 406
              + AQ    +  +   Q  T F
Sbjct: 741 ANHEAAQGKPGQYTSKKRQDETLF 764


>gi|294875381|ref|XP_002767294.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
 gi|239868857|gb|EER00012.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
          Length = 1227

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 119/454 (26%), Positives = 214/454 (47%), Gaps = 17/454 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA  GL  +++  +   G   P PIQ++ IP +L   DV  IA TG+GKT +++LPM+ 
Sbjct: 497 SFAMAGLDVRILRMLDRKGITTPFPIQMQAIPALLCGRDVIAIAPTGSGKTLAYLLPMVR 556

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L++ PTRELA Q+ +  E      NL  A   GG     Q  KL
Sbjct: 557 HVMAQPPLFFNEGPIGLVIAPTRELALQINEQAEALCHAVNLKCACAYGGGIMGPQLSKL 616

Query: 120 ERGADVLICTPGRILD---HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + G  +L+ TPGR++D     N     +  +  + +DEADRM DMGF P I  +   +  
Sbjct: 617 KAGCHILVATPGRLIDVLTLSNGKVTNLRRVSTVTLDEADRMFDMGFEPQISMVLRNINP 676

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT +FSAT    ++ ++   L  P  + +    S A  ++   V    +  +   LL+
Sbjct: 677 ARQTCMFSATFPPHVEGLARQSLYKPVEVVIGDSGSAATNVKQKVVVVRDEEERFNNLLK 736

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L +  D   + ++F  ++ +V  +   L   G++   +HG  DQ+ R   + +FK+   
Sbjct: 737 LLGEWADHG-SILVFFTKQDDVDGMYMRLLDYGYACLTLHGGQDQQDRDGTIDDFKKRKP 795

Query: 297 QLMVASDLAARGLDIPDVGHVFN---FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE- 352
                    +      DV H      +  P+ AE+Y+HR+GRTGRAG  G A+TL+    
Sbjct: 796 PPANILLATSVAARGLDVKHCICVINYTPPDHAEDYVHRVGRTGRAGNVGFAYTLINSST 855

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           + ++   + ++++     +  DL +L     ++ I+    A+K      +   F+  + +
Sbjct: 856 EGEYASELVEVLKAASQEVPADLVTL-AQNNQVSISAGLVAKKRGGFGGRGFTFESSELS 914

Query: 413 YSSQKSHIPLKESE------KISKLQQDIQENDA 440
            + Q+  + + +++      ++ KL+++ +   +
Sbjct: 915 RNQQQRKVEMDKAKAEADGTRLDKLKKEEEAGRS 948


>gi|169773397|ref|XP_001821167.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Aspergillus
           oryzae RIB40]
 gi|91207407|sp|Q2UH00|PRP28_ASPOR RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|83769028|dbj|BAE59165.1| unnamed protein product [Aspergillus oryzae]
          Length = 803

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 125/439 (28%), Positives = 203/439 (46%), Gaps = 37/439 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            + + GL  +++  V   GY +PTPIQ   IP+ +Q  D+ G+A TG+GKTASF+LP   
Sbjct: 368 SWDESGLPKRLMELVNKVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTASFLLPLLV 427

Query: 59  ----MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
               +  I E    +   P  ++L PTRELA Q+    +K+ +     V  ++GG  FE 
Sbjct: 428 YIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEE 487

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 488 QAYSLRNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 547

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ------- 227
           P + +                       ++  + T +                       
Sbjct: 548 PVSNEKPDSEEAENSMAMSQHIGTKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGS 607

Query: 228 -----------------YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
                              K+   L  +L S +     I+F N K+N   +   +++ GF
Sbjct: 608 AGEAVDTVEQRVEFIAGEDKRKKRLGDILSSGEFRPPIIVFVNIKRNCDAIAREIKQWGF 667

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y 
Sbjct: 668 SSVTLHGSKTQEQREAALASVRNGQTDVLVATDLAGRGIDVPDVSLVINFNMATTIESYT 727

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A T +  ED   +  ++++I      +   +S L   L K + AQ 
Sbjct: 728 HRIGRTGRAGKSGVAITFLGNEDTDVMYDLKQMI------MKSSISRLPEELRKHEAAQS 781

Query: 391 NHARKNNPIPQKSTGFDRR 409
              R        ++ F  +
Sbjct: 782 KPTRGFAKKNDDNSAFGSK 800


>gi|167041353|gb|ABZ06107.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
           HF4000_005I08]
          Length = 416

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 154/373 (41%), Positives = 219/373 (58%), Gaps = 5/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L L+  ++ A+ D GY  PTPIQ K+IP +L+  D+ G+AQTGTGKTA+F LP+L 
Sbjct: 3   SFAGLDLAQPILRAIADEGYTTPTPIQGKSIPPLLEGRDLLGVAQTGTGKTAAFALPLLH 62

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                 G++  R P  LIL PTRELA Q+ D+F  YG++  L   ++ GG+    Q + L
Sbjct: 63  RLADNAGKSHPRQPLALILAPTRELAGQIGDSFRTYGRHLRLRTGVVFGGVSIRRQIQTL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG  VL+ TPGR++D  NRG L ++ +E+ ++DEADRMLDMGFI  ++ IT+ +P  RQ
Sbjct: 123 ARGVHVLVATPGRLIDLMNRGDLRLDAVEVFILDEADRMLDMGFIRDVKKITAALPKRRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   +Q ++ + L NP R+E    S+T E ++   +       +         
Sbjct: 183 TLLFSATMPKSVQGLAADLLSNPVRVEAAPASTTVEKVDQMVLFVPKDKKRALLGELLND 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +IF   K     +   L  +G    AIHGN  Q +R + L  F+ G I+ +
Sbjct: 243 KDM---ARVLIFTRTKHGANRVARYLHDRGIHSDAIHGNKAQNARQRALDGFRSGRIRAL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV NFD+PN  E+Y+HRIGRT RAG  G A +     +  H+  
Sbjct: 300 VATDIAARGIDVEGVTHVINFDLPNDPESYVHRIGRTARAGAAGIAISFCDSGERAHLRD 359

Query: 360 IEKLIEKKVDWLN 372
           IEK I +KV  + 
Sbjct: 360 IEKTIRQKVPVIE 372


>gi|71650107|ref|XP_813758.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70878673|gb|EAN91907.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 630

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 114/376 (30%), Positives = 186/376 (49%), Gaps = 10/376 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
            FA +     +   V    Y KPTP+Q   IP+VL  HD+   AQTG+GKTA++++P++ 
Sbjct: 131 SFASMNTPLALKENVARCRYQKPTPVQKYGIPVVLCGHDLMACAQTGSGKTAAYLIPLVS 190

Query: 61  ------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                 T   +G+     P  L++ PTREL+ Q+ +   K+     +   ++ GG     
Sbjct: 191 SILSNVTPNHQGQGSRSSPAALVMAPTRELSIQIHEEGRKFTYRTGIRCVVVYGGADPRH 250

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  +L RG  +L+ TPGR+ D F RG +  ++I  +V+DEADRMLDMGF P I+ I    
Sbjct: 251 QVHELSRGCGLLVATPGRLWDVFTRGYVTFSSIRFMVLDEADRMLDMGFEPQIRMIVQGQ 310

Query: 175 PFTRQTLLFSA---TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                                ++ +   +   R           T E+            
Sbjct: 311 ESDMPPPGQRQTLLYSATFPTEIQQLAREFLHRHYFLQVGRVGSTTENITQDVRWVEDND 370

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                  L  ++  +  ++F  +K++   L   L     +  +IHG+  QR R + L  F
Sbjct: 371 KREHLLRLLHENQNQLILVFVEKKRDADYLERFLRNNRVACASIHGDRVQREREEALKMF 430

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K  + Q++VA+D+A+RGLDIPDV  V  +D+P+  ++Y+HRIGRTGRAG+ G+A +   +
Sbjct: 431 KSASCQVLVATDVASRGLDIPDVSIVIQYDMPSNIDDYVHRIGRTGRAGKVGRAISFFNE 490

Query: 352 EDIKHIDAIEKLIEKK 367
           ++   +D +  L+ + 
Sbjct: 491 KNRNIVDDLVPLLNET 506


>gi|297571784|ref|YP_003697558.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296932131|gb|ADH92939.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 520

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 141/459 (30%), Positives = 219/459 (47%), Gaps = 31/459 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD G+S  +V A+   G   P PIQ  T+P+ L+  D+ G A+TGTGKT  F +PM+ 
Sbjct: 38  TFADYGVSAPIVDALAAKGISHPFPIQALTLPVALKGSDIIGQAKTGTGKTLGFGIPMIE 97

Query: 62  ILEKGRARVRM-------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                             P+ L + PTRELA QVA +     KN ++ +  + GG  +E 
Sbjct: 98  RCIGPSEPGFDALAHPGAPQGLAVVPTRELAKQVAQDLRDAAKNRSIRIVEVYGGRAYEP 157

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q K LE+GA++++ TPGR++D      L +  +  +V+DEAD MLD+GF+  ++ I S  
Sbjct: 158 QIKDLEKGAEIIVGTPGRLIDLMKHRTLNLGAVRAVVLDEADEMLDLGFLEDVEKILSAT 217

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P TR T+LFSATM   +  ++  ++ +   I        + T++      Y  ++     
Sbjct: 218 PPTRHTMLFSATMPGPVIAMARRYMSHATHIRAQAHDDESTTVQSVRQVVYRAHALNKIE 277

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +         IIF   K+    +   L  +GF+  A+HG++ Q +R + L  F+ G
Sbjct: 278 VLARILQARGRGLTIIFTRTKRTAARVAEDLAARGFATGALHGDLGQGAREQALRAFRHG 337

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I ++VA+D+AARG+D+ +V HV N+  P   + Y+HRIGRTGRAG  G A T V  ED 
Sbjct: 338 KIDVLVATDVAARGIDVDNVTHVINYQAPEDEKTYVHRIGRTGRAGHSGTAITFVDWEDT 397

Query: 355 KHIDAIEKLIE----------KKVDWLNGDLSSLNPPLEKIDIAQHNH------------ 392
                I KL+              D L  DL        ++  AQ               
Sbjct: 398 PKWAVINKLLSLGMPEPVETYHTSDHLYTDLDIPTDVTGRLPKAQRTREGLNAEKLEDLG 457

Query: 393 --ARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKIS 429
              R       ++    R K++ +  + H     +E+ S
Sbjct: 458 ETGRSAGRGRNRNQNRGRSKRDRNGSQPHQNKGRNERRS 496


>gi|222624792|gb|EEE58924.1| hypothetical protein OsJ_10575 [Oryza sativa Japonica Group]
          Length = 696

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 144/380 (37%), Positives = 219/380 (57%), Gaps = 4/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD G   +++ A+   GY KPT IQ + +P+VL   D+ GIA+TG+GKTA+FVLPM+ 
Sbjct: 146 SFADCGFPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIV 205

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       +   P  ++  PTRELA Q+    +K+ K YNL VA + GG+    Q K+L
Sbjct: 206 HIMDQPELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKEL 265

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G +++I TPGR++D      L M     LV+DEADRM D+GF P I++I   +   RQ
Sbjct: 266 KAGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 325

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  ++++++   L +P R+ V    S  E I+       +   K   LL++L 
Sbjct: 326 TLLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKLP 385

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     ++F  +K  V  +   L ++GF + A+HG+ DQ SRM+ L  FK G   ++
Sbjct: 386 GMIDDGD-VLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVL 444

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIKHID 358
           VA+D+AARGLDI  +  V NFD+    + +IHRIGRTGRAG + G A+TL+ +++++   
Sbjct: 445 VATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEVRFAG 504

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +   +      +  +L  L
Sbjct: 505 ELVHCLIAAGQDVPNELMDL 524


>gi|115452607|ref|NP_001049904.1| Os03g0308500 [Oryza sativa Japonica Group]
 gi|122247124|sp|Q10MH8|RH24_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 24
 gi|108707754|gb|ABF95549.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
           Japonica Group]
 gi|113548375|dbj|BAF11818.1| Os03g0308500 [Oryza sativa Japonica Group]
 gi|215737377|dbj|BAG96306.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 770

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 144/380 (37%), Positives = 219/380 (57%), Gaps = 4/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD G   +++ A+   GY KPT IQ + +P+VL   D+ GIA+TG+GKTA+FVLPM+ 
Sbjct: 220 SFADCGFPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIV 279

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       +   P  ++  PTRELA Q+    +K+ K YNL VA + GG+    Q K+L
Sbjct: 280 HIMDQPELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKEL 339

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G +++I TPGR++D      L M     LV+DEADRM D+GF P I++I   +   RQ
Sbjct: 340 KAGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 399

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  ++++++   L +P R+ V    S  E I+       +   K   LL++L 
Sbjct: 400 TLLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKLP 459

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     ++F  +K  V  +   L ++GF + A+HG+ DQ SRM+ L  FK G   ++
Sbjct: 460 GMIDDGD-VLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVL 518

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIKHID 358
           VA+D+AARGLDI  +  V NFD+    + +IHRIGRTGRAG + G A+TL+ +++++   
Sbjct: 519 VATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEVRFAG 578

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +   +      +  +L  L
Sbjct: 579 ELVHCLIAAGQDVPNELMDL 598


>gi|308162755|gb|EFO65133.1| Translation initiation factor eIF-4A, putative [Giardia lamblia
           P15]
          Length = 391

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 114/377 (30%), Positives = 185/377 (49%), Gaps = 7/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L P ++  +   GY  P+ IQ + I  ++   D    AQ+GTGKTA+F + ML 
Sbjct: 21  KFDDMNLHPDLLFGIFTYGYKTPSAIQSQAIVPIISGKDTIAQAQSGTGKTAAFTIGMLQ 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++ P+ +IL PTRELA Q     +  G    + VA  IGG   +      + 
Sbjct: 81  RIDLA---LKSPQAIILSPTRELALQTLKVVDGIGSRLEVQVAQCIGGTQVDDDIAAAQS 137

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +     +     N   + V+DEAD ML  GF   I +I   +    Q +
Sbjct: 138 CHLIVATPGRLLSLLQKKYVTTSNVKMV-VLDEADEMLSRGFTEQIVSIMKFMNADIQIV 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+++P  I V     T + I               A + + +  
Sbjct: 197 LVSATLPPEILELTRQFMRDPVSILVKEAELTLDGIRQ---YVVDLQDAWKAEVVEDIYK 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             +++ G+IFCN    V  L   L+  G ++  IH  +DQ  R KI+  F+ G  ++++A
Sbjct: 254 VLSVQQGVIFCNSIGRVKELAEKLKSAGHTLSCIHSELDQAERNKIMGEFRSGQTRILIA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +++ ARG+D+ +V  V N+D+P   E Y+HRIGR+GR GR G A   V ++D + + AI 
Sbjct: 314 TNIIARGIDVQNVSLVINYDIPREPETYLHRIGRSGRFGRKGVAINFVTEKDKQSMQAIT 373

Query: 362 KLIEKKVDWLNGDLSSL 378
                  + L  DLSSL
Sbjct: 374 DKFNVTTENLPEDLSSL 390


>gi|226291622|gb|EEH47050.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28
           [Paracoccidioides brasiliensis Pb18]
          Length = 443

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 120/424 (28%), Positives = 199/424 (46%), Gaps = 37/424 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A+ GL  +++  +   GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 3   SWAESGLPKRLLSIIDKVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 62

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                    E    R   P  +IL PTRELA Q+    +K+       V  ++GG   E 
Sbjct: 63  YIGELPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAKKFSTPLGFNVVSIVGGHSLEE 122

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  ++++    +++DEADRM+D+GF   +  I   +
Sbjct: 123 QAYSLRNGAEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 182

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ------- 227
           P   +          +            ++  + T +  +                    
Sbjct: 183 PVANEKPDTEDAENPQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 242

Query: 228 -----------------YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
                              K+   L ++L S++     I+F N K+N   +   ++  G+
Sbjct: 243 VGEAVDTVEQRVEFVSGEDKRKKRLAEILASREFRPPIIVFVNIKRNCDAVARDIKNMGY 302

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y 
Sbjct: 303 SSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYT 362

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ 
Sbjct: 363 HRIGRTGRAGKSGVAITFLGNEDSDVLYDLKQML------MKSSISRVPEELRKHEAAQS 416

Query: 391 NHAR 394
              R
Sbjct: 417 KPVR 420


>gi|295668368|ref|XP_002794733.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28
           [Paracoccidioides brasiliensis Pb01]
 gi|226286149|gb|EEH41715.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28
           [Paracoccidioides brasiliensis Pb01]
          Length = 803

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 120/424 (28%), Positives = 199/424 (46%), Gaps = 37/424 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A+ GL  +++  +   GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 363 SWAESGLPKRLLSIIDKVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 422

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                    E    R   P  +IL PTRELA Q+    +K+       V  ++GG   E 
Sbjct: 423 YIGELPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAKKFSTPLGFNVVSIVGGHSLEE 482

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  ++++    +++DEADRM+D+GF   +  I   +
Sbjct: 483 QAYSLRNGAEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 542

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ------- 227
           P   +          +            ++  + T +  +                    
Sbjct: 543 PVANEKPDTEDAENPQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 602

Query: 228 -----------------YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
                              K+   L ++L S++     I+F N K+N   +   ++  G+
Sbjct: 603 VGEAVDTVEQRVEFVSGEDKRKKRLAEILASREFRPPIIVFVNIKRNCDAVARDIKNMGY 662

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y 
Sbjct: 663 SSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYT 722

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ 
Sbjct: 723 HRIGRTGRAGKSGVAITFLGNEDSDVLYDLKQML------MKSSISRVPEELRKHEAAQS 776

Query: 391 NHAR 394
              R
Sbjct: 777 KPVR 780


>gi|225679862|gb|EEH18146.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28
           [Paracoccidioides brasiliensis Pb03]
          Length = 615

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 120/424 (28%), Positives = 199/424 (46%), Gaps = 37/424 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A+ GL  +++  +   GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 175 SWAESGLPKRLLSIIDKVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 234

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                    E    R   P  +IL PTRELA Q+    +K+       V  ++GG   E 
Sbjct: 235 YIGELPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAKKFSTPLGFNVVSIVGGHSLEE 294

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  ++++    +++DEADRM+D+GF   +  I   +
Sbjct: 295 QAYSLRNGAEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 354

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ------- 227
           P   +          +            ++  + T +  +                    
Sbjct: 355 PVANEKPDTEDAENPQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 414

Query: 228 -----------------YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
                              K+   L ++L S++     I+F N K+N   +   ++  G+
Sbjct: 415 VGEAVDTVEQRVEFVSGEDKRKKRLAEILASREFRPPIIVFVNIKRNCDAVARDIKNMGY 474

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y 
Sbjct: 475 SSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYT 534

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ 
Sbjct: 535 HRIGRTGRAGKSGVAITFLGNEDSDVLYDLKQML------MKSSISRVPEELRKHEAAQS 588

Query: 391 NHAR 394
              R
Sbjct: 589 KPVR 592


>gi|156553939|ref|XP_001602245.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 836

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 149/451 (33%), Positives = 235/451 (52%), Gaps = 27/451 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ LS  ++ AV    +V PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP L 
Sbjct: 155 TFYNMNLSRPLLKAVTSMNFVNPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPTLE 214

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L        + R L+L PTREL  QV    ++  +  ++ V L +GG+  + Q   L +
Sbjct: 215 RLLYRPLDGAVTRVLVLVPTRELGVQVYQVTKQLSQFTSVEVGLSVGGLDVKVQESVLRK 274

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++DH  N     ++ IE+L++DEADRMLD  F   +++I      TRQT
Sbjct: 275 NPDIVIATPGRLIDHLANTPTFSLDTIEVLILDEADRMLDEYFAEQMKHIVRQCARTRQT 334

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+E++ ++   L  P ++ V++    A  +   F+    +       +   L 
Sbjct: 335 ILFSATMTEEVKDLAAVSLDKPVKVFVDSNQDVAFNLRQEFIRIRKEREGDREAILAALI 394

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +    + ++F   KK    L   L   G  V  +HGN+ Q  R++ L  FK+  I +++
Sbjct: 395 CRTFHDHTMVFVQTKKQAHRLHIVLGLLGVKVGELHGNLSQPQRLENLRKFKDEEIDVLL 454

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA- 359
           A+D+AARGLDI  V  V NF +P   ++YIHR+GRT RAGR G + +L  +++   +   
Sbjct: 455 ATDVAARGLDISGVKTVINFVMPATLQHYIHRVGRTARAGRGGVSVSLAGEQERSLVKEV 514

Query: 360 -----------------IEKLIEKKVDWLNGDLSS-LNPPLEKIDIAQ-HNHARKNNPIP 400
                            IEK   KK+  +  D+ + L    +  +IA+  N A +   + 
Sbjct: 515 IKQAKNPVKNRIIPPDIIEKY-NKKLQSIEEDVENILEEERQDREIAKIENQANRAENML 573

Query: 401 QKSTGFDRR-----KKNYSSQKSHIPLKESE 426
           ++S   D+R     KK   S+K  + L E +
Sbjct: 574 KESDSKDQRSWFQTKKERQSEKEKLMLTEKQ 604


>gi|154345774|ref|XP_001568824.1| DEAD box RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134066166|emb|CAM43956.1| putative DEAD box RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 527

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 131/447 (29%), Positives = 230/447 (51%), Gaps = 9/447 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL  ++  A  +AG+  PT IQ  TI +V +  D+ G+AQTG+GKT ++ LP++ 
Sbjct: 54  TFKDLGLCRELCMACAEAGWQHPTRIQASTITVVAEGRDLIGVAQTGSGKTGAYALPLVN 113

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            L   + +      L++ PTRELA QV   F   G++  L VA L+GG     Q  +  +
Sbjct: 114 WLLT-QPKTPYLSVLVMVPTRELAQQVTAQFLLLGRSVGLRVATLVGGADMVEQACELSK 172

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++           N     +  +  LV+DEAD+MLDM +   I  I   +P  R+T
Sbjct: 173 RPHVIVGTPGRVKDHLSNTKGFKLVKLHALVLDEADKMLDMDYEKEIDAILEQLPQDRRT 232

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT++ ++ ++ +  L++P  ++V+  ++T +T++  ++        +      L  
Sbjct: 233 MLFSATLSTKVDRLQKASLRDPVLLQVHRKNTTVDTLKQYYIFAPFA---QMLSYLHLFL 289

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++T  + +IFC     V  +  +L   G     + G +DQ +R   L+ FKEG +++++
Sbjct: 290 TKETGNHILIFCRSAALVHRITLALRTLGHRALPLMGRMDQSNRNIALTKFKEGKVRMLI 349

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A RGLDIP    V NF +P+  E+YIHR+GRT RAG  GKA  L+++ DI  +  I
Sbjct: 350 CTDVAQRGLDIPHTDVVVNFSLPDHVEDYIHRVGRTARAGAEGKAVNLISQYDIVLLQKI 409

Query: 361 EKLIEKK-VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           E+    K V++ +   S +   L++++ A+    R+   I + +   +  K++     + 
Sbjct: 410 EQQTGVKCVEYPSLPESEVQLVLQRVEDAEQEAIRE---IREDAGERNLEKESRQLTTAR 466

Query: 420 IPLKESEKISKLQQDIQENDADSLGFR 446
              ++         D +   +D    R
Sbjct: 467 KGKRDRGDTDMGYDDAKHGTSDFATLR 493


>gi|332297922|ref|YP_004439844.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM
           12168]
 gi|332181025|gb|AEE16713.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM
           12168]
          Length = 610

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 125/465 (26%), Positives = 226/465 (48%), Gaps = 3/465 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +  L  ++   +  AGYV  TP+Q + +   L+  D+   +QTGTGKTA++++ ++
Sbjct: 1   MEFTEFDLHEELQKGIAGAGYVTCTPVQEQVLKGSLEGADLYVQSQTGTGKTAAYLISII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +   R  V   + L++ PTRELA QV    +K  +   L      GG+ +  Q   L+
Sbjct: 61  QEMLT-REEVAGKKALVMVPTRELAVQVEQEAKKLLEFTPLKAGSFYGGVGYTQQTAMLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++I TPGR++D    G + ++++  LV+DEADRM DMGF P ++ +  ++P T   
Sbjct: 120 NNVNIIIGTPGRVIDLQESGAMDLSSVAFLVVDEADRMFDMGFYPDLRTLIKVLPKTHDR 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
                + T     V     +  +  +  T  +   T+E          S     L   + 
Sbjct: 180 QTMLFSAT-LNTYVKNLAWEYTEEAKEITIEAEQLTVEEIDQVLLHVSSDSKMKLLLGIL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  ++ I+FCN K++   +   L+  G     I G++ Q  R+++L +FK G+++ +V
Sbjct: 239 QHEKPESVIVFCNTKRSCEVVAKRLQLNGIESEFIIGDLPQAKRLQVLESFKRGSLKCLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+  V N+D+PN +ENY+HRIGRT RAG+ GKA+T  +++D+ ++ AI
Sbjct: 299 ATDVAARGIDVNDLAMVVNYDLPNESENYVHRIGRTARAGKSGKAYTFCSEQDVYNLPAI 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK-IDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           E+ +   +         +       + I   ++   +    +       R+    S  S 
Sbjct: 359 ERYLGAPIPASVAYEDMMTEDKSASVYIRTGDYGDDDGRPFRNRRDGGDRRGASRSGDSR 418

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            P ++           +    ++       P   +   RG  ND+
Sbjct: 419 RPPRDGAAADSRNNRNRRGPDEARFDGDRKPRTDIRTERGGRNDR 463


>gi|327356974|gb|EGE85831.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 798

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 123/424 (29%), Positives = 199/424 (46%), Gaps = 37/424 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A+ GL  +++  +   GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 358 SWAESGLPKRLLNIIEQVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 417

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                    E    R   P  +IL PTRELA Q+    +K+       V  ++GG   E 
Sbjct: 418 YIAELPRLDEFEWRRNDGPYAIILAPTRELAQQIELEAKKFSAPLGFNVVSIVGGHSLEE 477

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  ++ +    +++DEADRM+D+GF   +  I   +
Sbjct: 478 QAYSLRNGAEIIIATPGRLVDCIERRMIVFSQCCYVIMDEADRMIDLGFEEPVNKILDAL 537

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA----------- 223
           P T Q          +            ++  + T +                       
Sbjct: 538 PVTNQKPDTEDAENPQAMSQHIGGKDRYRQTMMYTATMPPAVERIARKYLRRPAIVTIGN 597

Query: 224 -------------TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
                          +   K+   L ++L S++     I+F N K+N   +   ++  G+
Sbjct: 598 IGEAVDTVEQRVEFISGEDKRKKRLAEILSSREFRPPIIVFVNIKRNCDAVARDIKNMGY 657

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    ENY 
Sbjct: 658 SSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIENYT 717

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ 
Sbjct: 718 HRIGRTGRAGKSGIAITFLGNEDSDVLYDLKQML------MKSAISRVPEELRKHEAAQS 771

Query: 391 NHAR 394
              R
Sbjct: 772 KPVR 775


>gi|325088148|gb|EGC41458.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           capsulatus H88]
          Length = 805

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 124/432 (28%), Positives = 204/432 (47%), Gaps = 37/432 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A+ GL  +++  V   GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 364 SWAESGLPKRLLSIVEQVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 423

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                    E    R   P  +IL PTRELA Q+    +K+       V  ++GG   E 
Sbjct: 424 YIAELPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAKKFSVPLGFNVVSIVGGHSLEE 483

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  ++++    +++DEADRM+D+GF   +  I   +
Sbjct: 484 QAYSLRNGAEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 543

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA----------- 223
           P T Q          +            ++  + T +  +                    
Sbjct: 544 PVTNQKPDTEDAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 603

Query: 224 -------------TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
                          +   K+   L ++L S++     I+F N K+N   +   ++  G+
Sbjct: 604 IGEAVDTVEQRVEFISGEDKRKKRLAEILSSREFRPPIIVFVNIKRNCDAVARDIKNMGY 663

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y 
Sbjct: 664 SSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYT 723

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ 
Sbjct: 724 HRIGRTGRAGKSGIAITFLGNEDSDVLYDLKQML------MKSSISRVPEELRKHEAAQS 777

Query: 391 NHARKNNPIPQK 402
              R  +   +K
Sbjct: 778 KPVRGGSASQKK 789


>gi|312067818|ref|XP_003136922.1| Ddx49-A-prov protein [Loa loa]
 gi|307767911|gb|EFO27145.1| Ddx49-A-prov protein [Loa loa]
          Length = 478

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 135/443 (30%), Positives = 211/443 (47%), Gaps = 13/443 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++LGLS  +   V       PTP+Q+  IP +L   DV G A+TGTGKT +F LP+L 
Sbjct: 44  TFSELGLSKWLCNQVRHLAMNTPTPVQVNCIPHILAGSDVLGCAKTGTGKTLAFGLPILH 103

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L            L+L PTRELA Q+ D F   G    L + +++GG    AQ   L R
Sbjct: 104 ELAI---DPYGICALVLTPTRELAIQIGDQFAALGTPIGLKIGIVVGGKDRVAQGNDLAR 160

Query: 122 GADVLICTPGRILDHFNRGKLL----MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              +++ TPGR+ DH              +  LV+DEADR+LD  +   ++ I + +P  
Sbjct: 161 RPHIVVATPGRLADHLESDSENTGKLFKKLRFLVLDEADRLLDGQYSIELKTILNFLPKQ 220

Query: 178 RQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           RQTLLFSAT+T  L +    +  +     + +  ++  +  +   +   A        + 
Sbjct: 221 RQTLLFSATITSALSQLHQVSVKKPYFFEDKSEIATVDKLEQKYVLCPCAVKDAYLVYVV 280

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +    +      +IF +  +    L       GF V ++H  I Q+ R   L+ F+ G I
Sbjct: 281 KNFHEKHPDSLILIFSHTCRECQALAIMFHGLGFQVGSLHSQISQQERTSSLTKFRSGRI 340

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++ +D+A+RGLDIP V  V N +VP   + YIHR+GR+ RAGR G A   V + DI  
Sbjct: 341 KILICTDVASRGLDIPHVDLVINHNVPQNPKTYIHRVGRSARAGRFGCALLFVTQYDIFL 400

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  IEK+I KK+D L      +N       + Q    ++   I      F  RK     +
Sbjct: 401 VQEIEKVIGKKLDKL-----IVNDKKVTQYVTQVLVTKREAEIKLDQQNFGERKIINKRK 455

Query: 417 KSHIPLKESEKISKLQQDIQEND 439
           +  I   + +++ K  +  +E  
Sbjct: 456 EMLIAGLDPDEVEKTLKMQREQR 478


>gi|302782918|ref|XP_002973232.1| hypothetical protein SELMODRAFT_267628 [Selaginella moellendorffii]
 gi|300158985|gb|EFJ25606.1| hypothetical protein SELMODRAFT_267628 [Selaginella moellendorffii]
          Length = 597

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 134/391 (34%), Positives = 199/391 (50%), Gaps = 14/391 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA++     +   +    +VKPTP+Q   IP+ L   D+   AQTG+GKT +F  P+  
Sbjct: 151 TFAEIDFGTALDENIKRCKFVKPTPVQRHAIPIALAGRDLMACAQTGSGKTLAFCFPIIA 210

Query: 60  ----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                   ++ R R   P  LIL PTREL+AQ+ D  +K+     L V +  GG     Q
Sbjct: 211 GILRDPPRQRPRGRWACPLALILSPTRELSAQIHDEAKKFAYRTGLKVVVAYGGAQISLQ 270

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---- 171
            ++LERG D+L+ TPGR+ D   RG++ ++ I+ L +DEADRMLDMGF P I+ I     
Sbjct: 271 MRELERGVDILVATPGRLHDLMERGRVALSMIKYLALDEADRMLDMGFEPQIRKIVETSD 330

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
              P  RQT+LFSAT    +Q ++ +FL N   + V    S+ + I            + 
Sbjct: 331 MPPPGQRQTMLFSATFPRTIQSLAADFLHNYIFLAVGRVGSSTDLIVQRVERVQEAEKRS 390

Query: 232 CALLQQLLQS----QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             +     Q            ++F   K+    L   L + GF    IHG+  Q  R + 
Sbjct: 391 LLMDIIHGQKAIGANGQPPLMLVFVETKRGADALEDWLIRSGFPATTIHGDRTQPEREQA 450

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L  F+ G   ++VA+D+AARGLDIP V HV N+D+P+  ++Y+HRIGRTGRAG  G A  
Sbjct: 451 LRCFRTGMTPILVATDVAARGLDIPHVAHVINYDLPSDIDDYVHRIGRTGRAGNSGLATA 510

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
               +D      + +L+++    +   L  +
Sbjct: 511 FFTDKDSGLAKPLAELMQESSQEVPSWLEGI 541


>gi|302789710|ref|XP_002976623.1| hypothetical protein SELMODRAFT_151274 [Selaginella moellendorffii]
 gi|300155661|gb|EFJ22292.1| hypothetical protein SELMODRAFT_151274 [Selaginella moellendorffii]
          Length = 595

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 134/391 (34%), Positives = 199/391 (50%), Gaps = 14/391 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA++     +   +    +VKPTP+Q   IP+ L   D+   AQTG+GKT +F  P+  
Sbjct: 149 TFAEIDFGTALDENIKRCKFVKPTPVQRHAIPIALAGRDLMACAQTGSGKTLAFCFPIIA 208

Query: 60  ----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                   ++ R R   P  LIL PTREL+AQ+ D  +K+     L V +  GG     Q
Sbjct: 209 GILRDPPRQRPRGRWACPLALILSPTRELSAQIHDEAKKFAYRTGLKVVVAYGGAQISLQ 268

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---- 171
            ++LERG D+L+ TPGR+ D   RG++ ++ I+ L +DEADRMLDMGF P I+ I     
Sbjct: 269 MRELERGVDILVATPGRLHDLMERGRVALSMIKYLALDEADRMLDMGFEPQIRKIVETSD 328

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
              P  RQT+LFSAT    +Q ++ +FL N   + V    S+ + I            + 
Sbjct: 329 MPPPGQRQTMLFSATFPRTIQSLAADFLHNYIFLAVGRVGSSTDLIVQRVERVQEAEKRS 388

Query: 232 CALLQQLLQS----QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             +     Q            ++F   K+    L   L + GF    IHG+  Q  R + 
Sbjct: 389 LLMDIIHGQKAIGANGQPPLMLVFVETKRGADALEDWLIRSGFPATTIHGDRTQPEREQA 448

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L  F+ G   ++VA+D+AARGLDIP V HV N+D+P+  ++Y+HRIGRTGRAG  G A  
Sbjct: 449 LRCFRTGMTPILVATDVAARGLDIPHVAHVINYDLPSDIDDYVHRIGRTGRAGNSGLATA 508

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
               +D      + +L+++    +   L  +
Sbjct: 509 FFTDKDSGLAKPLAELMQESSQEVPSWLEGI 539


>gi|240282011|gb|EER45514.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           capsulatus H143]
          Length = 790

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 124/432 (28%), Positives = 204/432 (47%), Gaps = 37/432 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A+ GL  +++  V   GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 349 SWAESGLPKRLLSIVEQVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 408

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                    E    R   P  +IL PTRELA Q+    +K+       V  ++GG   E 
Sbjct: 409 YIAELPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAKKFSVPLGFNVVSIVGGHSLEE 468

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  ++++    +++DEADRM+D+GF   +  I   +
Sbjct: 469 QAYSLRNGAEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 528

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA----------- 223
           P T Q          +            ++  + T +  +                    
Sbjct: 529 PVTNQKPDTEDAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 588

Query: 224 -------------TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
                          +   K+   L ++L S++     I+F N K+N   +   ++  G+
Sbjct: 589 IGEAVDTVEQRVEFISGEDKRKKRLAEILSSREFRPPIIVFVNIKRNCDAVARDIKNMGY 648

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y 
Sbjct: 649 SSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYT 708

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ 
Sbjct: 709 HRIGRTGRAGKSGIAITFLGNEDSDVLYDLKQML------MKSSISRVPEELRKHEAAQS 762

Query: 391 NHARKNNPIPQK 402
              R  +   +K
Sbjct: 763 KPVRGGSASQKK 774


>gi|261204203|ref|XP_002629315.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           dermatitidis SLH14081]
 gi|239587100|gb|EEQ69743.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           dermatitidis SLH14081]
 gi|239614347|gb|EEQ91334.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           dermatitidis ER-3]
          Length = 804

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 123/424 (29%), Positives = 199/424 (46%), Gaps = 37/424 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A+ GL  +++  +   GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 364 SWAESGLPKRLLNIIEQVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 423

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                    E    R   P  +IL PTRELA Q+    +K+       V  ++GG   E 
Sbjct: 424 YIAELPRLDEFEWRRNDGPYAIILAPTRELAQQIELEAKKFSAPLGFNVVSIVGGHSLEE 483

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  ++ +    +++DEADRM+D+GF   +  I   +
Sbjct: 484 QAYSLRNGAEIIIATPGRLVDCIERRMIVFSQCCYVIMDEADRMIDLGFEEPVNKILDAL 543

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA----------- 223
           P T Q          +            ++  + T +                       
Sbjct: 544 PVTNQKPDTEDAENPQAMSQHIGGKDRYRQTMMYTATMPPAVERIARKYLRRPAIVTIGN 603

Query: 224 -------------TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
                          +   K+   L ++L S++     I+F N K+N   +   ++  G+
Sbjct: 604 IGEAVDTVEQRVEFISGEDKRKKRLAEILSSREFRPPIIVFVNIKRNCDAVARDIKNMGY 663

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    ENY 
Sbjct: 664 SSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIENYT 723

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ 
Sbjct: 724 HRIGRTGRAGKSGIAITFLGNEDSDVLYDLKQML------MKSAISRVPEELRKHEAAQS 777

Query: 391 NHAR 394
              R
Sbjct: 778 KPVR 781


>gi|225559088|gb|EEH07371.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           capsulatus G186AR]
          Length = 805

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 124/432 (28%), Positives = 204/432 (47%), Gaps = 37/432 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A+ GL  +++  V   GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 364 SWAESGLPKRLLSIVEQVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 423

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                    E    R   P  +IL PTRELA Q+    +K+       V  ++GG   E 
Sbjct: 424 YIAELPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAKKFSVPLGFNVVSIVGGHSLEE 483

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  ++++    +++DEADRM+D+GF   +  I   +
Sbjct: 484 QAYSLRNGAEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 543

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA----------- 223
           P T Q          +            ++  + T +  +                    
Sbjct: 544 PVTNQKPDTEDAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 603

Query: 224 -------------TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
                          +   K+   L ++L S++     I+F N K+N   +   ++  G+
Sbjct: 604 IGEAVDTVEQRVEFISGEDKRKKRLAEILSSREFRPPIIVFVNIKRNCDAVARDIKNMGY 663

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y 
Sbjct: 664 SSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYT 723

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ 
Sbjct: 724 HRIGRTGRAGKSGIAITFLGNEDSDVLYDLKQML------MKSSISRVPEELRKHEAAQS 777

Query: 391 NHARKNNPIPQK 402
              R  +   +K
Sbjct: 778 KPVRGGSASQKK 789


>gi|194377854|dbj|BAG63290.1| unnamed protein product [Homo sapiens]
          Length = 470

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 166/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 89  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 148

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY  +  ++V      I  + +  K    
Sbjct: 149 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 208

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    NR   L N    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 209 HVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLGQLDMRRDVQEIFRLTPHEKQCMM 268

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ +++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 269 FSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL--LDV 326

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 327 LEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 386

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 387 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 446

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 447 DRFEVNVAELPEEID 461


>gi|147902002|ref|NP_001081728.1| probable ATP-dependent RNA helicase DDX4 [Xenopus laevis]
 gi|82217454|sp|Q91372|DDX4_XENLA RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog;
           AltName: Full=Vasa-like protein; Short=xVLG1
 gi|2896107|gb|AAC03114.1| DEAD box protein [Xenopus laevis]
 gi|213623390|gb|AAI69679.1| DEAD box protein [Xenopus laevis]
 gi|213626590|gb|AAI69677.1| DEAD box protein [Xenopus laevis]
          Length = 700

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 121/389 (31%), Positives = 203/389 (52%), Gaps = 13/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   V  AGYVK TP+Q  +IP+++   D+   AQTG+GKTA+F+LP+L
Sbjct: 274 LTFEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPIL 333

Query: 61  TILEK------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           + +           +++ P  +I+ PTREL  Q+  +  K+     +   ++ GGI    
Sbjct: 334 SYMMNEGITASQYLQLQEPEAIIIAPTRELINQIYLDARKFSYGTCVRPVVVYGGIQPVH 393

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             + +E+G ++L  TPGR+LD  ++ K+ ++ +  LV+DEADRMLDMGF P I+ + +  
Sbjct: 394 AMRDVEKGCNILCATPGRLLDIVSKEKIGLSKLRYLVLDEADRMLDMGFAPEIEKLMTKP 453

Query: 175 PFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
               +      +FSAT  +E+++++ N+L++     V      A +     V    +  K
Sbjct: 454 GMPTKEKRQTLMFSATYPEEIRRLASNYLKSEHLFVVVGLVGGACSDVAQTVLEMRENGK 513

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
                   +      +  +IF N KK    +   L ++ FS  +IHG+ +Q  R   L +
Sbjct: 514 ME--KLLEILKSSEKERTMIFVNTKKKADFIAGYLCQEKFSSTSIHGDREQYQRESALWD 571

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++V + +AARGLDI +V HV N+DVP   + Y+HRIGRTGR G  GKA +   
Sbjct: 572 FRTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCGNTGKATSFFN 631

Query: 351 -KEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            ++D      + K++      +   L  +
Sbjct: 632 VQDDHVIARPLVKILTDAHQEVPAWLEEI 660


>gi|120598117|ref|YP_962691.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|146293812|ref|YP_001184236.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|120558210|gb|ABM24137.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145565502|gb|ABP76437.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 413

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 168/420 (40%), Positives = 242/420 (57%), Gaps = 14/420 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L+  +V  + + GY  PTPIQ + IP++L + DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFSSLSLNTTLVNTITELGYSLPTPIQSEAIPVILAKQDVMAGAQTGTGKTAAFALPIL 60

Query: 61  T-----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +E+   RV+  + L+L PTRELA QV  +F KY KN ++ + +  GG+  +AQ
Sbjct: 61  HLLMAKNVEQKAERVKTVQALVLVPTRELAVQVHQSFVKYAKNTDIRIGIAYGGVSIDAQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
               + G DVLI TPGR+LDH  +G L +N +  LV DEADRMLDMGF+  I  +   VP
Sbjct: 121 VDVFKTGIDVLIATPGRLLDHLRQGVLNLNQLSTLVFDEADRMLDMGFMDEINAVLKQVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT+ D + ++S++ L+ PK IEV   ++TA  +       YA  S +    
Sbjct: 181 KDRQTLLFSATLDDAIFELSKSLLREPKLIEVTKRNTTAAQV---EQRVYAIDSDRKTEF 237

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L   +     +IF   K+ V  L   L K      A HG++ Q +R K+L  FK G 
Sbjct: 238 VSHLIRSNYWHQVLIFSRTKQGVDRLVQQLNKLSIVTHAFHGDLSQGAREKVLQAFKLGN 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           IQ++VA+D+AARGLDI ++ +V NF++P  AE+YIHRIGRTGRAG  G A TL ++ED  
Sbjct: 298 IQVLVATDVAARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDTL 357

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            ++ +E +++K++   W  G      P   K++     + +       K   F  +K + 
Sbjct: 358 LLEEVEVVLDKRLPQQWYPG----FEPDFNKMEPEPRRNGKAAQKQRAKKRAFGSKKPSR 413


>gi|46124943|ref|XP_387025.1| hypothetical protein FG06849.1 [Gibberella zeae PH-1]
 gi|91207408|sp|Q4I7F9|PRP28_GIBZE RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
          Length = 721

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 121/434 (27%), Positives = 203/434 (46%), Gaps = 35/434 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  L  +++  V D GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 289 SWQESNLPQRLLNIVDDVGYKDPSPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLV 348

Query: 62  ILE-----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +          +   P  LI+ PTREL  Q+     K+       V  ++GG   E Q 
Sbjct: 349 YISDLPPLDEINKHDGPYALIMAPTRELVQQIETEARKFAGPLGFRVVSIVGGHQIEEQA 408

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GA++++ TPGR+LD   R  L+++    +++DEADRM+D+GF   +  I   +P 
Sbjct: 409 YNLRDGAEIVVATPGRLLDCIERRLLVLSQCCYVIMDEADRMIDLGFEESVNKILDALPV 468

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ--------- 227
           T +          ++ +         ++  + T +                         
Sbjct: 469 TNEKPDTDEAENAQIMQRYLGGRDRYRQTMMYTATMPPLVERIAKKYLRRPAIVTIGNAG 528

Query: 228 ---------------YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
                            ++   LQ++L S +     I+F N K+N   +   +++ G+S 
Sbjct: 529 EAVDTVEQRVEFVSGEDRRKKRLQEILSSGNFGPPIIVFVNIKRNCDAVARDIKQMGWSA 588

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
             +HG+  Q  R   L + + G  Q++VA+DLA RG+D+PDV  V NF++    E+Y HR
Sbjct: 589 VTLHGSKTQEQREAALGSVRAGHTQVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHR 648

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T +  ED + +  +++++ K        +S +   L + + AQ   
Sbjct: 649 IGRTGRAGKSGVAITFLGPEDHETMYDLKQILSK------SSISKVPEELRRHEAAQSKP 702

Query: 393 ARKNNPIPQKSTGF 406
            R       + +G 
Sbjct: 703 VRGAKKDKDEGSGK 716


>gi|148973902|ref|ZP_01811435.1| ATP-dependent RNA helicase DbpA [Vibrionales bacterium SWAT-3]
 gi|145965599|gb|EDK30847.1| ATP-dependent RNA helicase DbpA [Vibrionales bacterium SWAT-3]
          Length = 459

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 147/460 (31%), Positives = 244/460 (53%), Gaps = 19/460 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ + L P+++  +   GY + TPIQ  ++P +L   DV G  +TG+GKTA+F L +L 
Sbjct: 5   KFSSIALKPELLHTLDSLGYTEMTPIQALSLPTILNGKDVIGQGKTGSGKTAAFGLGVLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+   +L+L PTRELA QVA       +  +    L +  G+P   Q   LE
Sbjct: 65  NLRVKRFRVQ---SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH  +G++ ++ +  LV+DEADRML+MGF   +  +    P  RQT
Sbjct: 122 HGAHILVGTPGRILDHLEKGRIDLSELNTLVLDEADRMLEMGFQDALDAVIDAAPKERQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT   +++ V++  ++NP+ ++V +   T +           + S+      +LL 
Sbjct: 182 LLFSATFPKQIKSVADRIMRNPEMVKVES---THDHSSIQQHFYKLEGSEARDDALELLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++FCN KK V N+   L  +GFSV  +HG+++QR R + L  F   TI ++V
Sbjct: 239 LHHQPESAVVFCNTKKEVQNVTDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G A +  +++++  +  I
Sbjct: 299 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAISFFSEKEMYRVAQI 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE------KIDIAQHNHARKNNPIP--QKSTGFDRR--- 409
           ++ ++  ++        +  P        +ID  +    R  + +       G D +   
Sbjct: 359 DEYMDMPIEPSELPAKPIAKPYYSNMVTIQIDGGKKAKLRAGDILGALTGQGGIDGKSVG 418

Query: 410 KKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNM 449
           K N  + ++++ + E     K    I+        FR  +
Sbjct: 419 KINLFAMRAYVAV-ERSVAKKALNKIESGKMKGRQFRARI 457


>gi|194903791|ref|XP_001980939.1| GG17436 [Drosophila erecta]
 gi|190652642|gb|EDV49897.1| GG17436 [Drosophila erecta]
          Length = 793

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 132/398 (33%), Positives = 207/398 (52%), Gaps = 20/398 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L+  +   V  A Y KPTP+Q   IP+++   D+   AQTG+GKTA+F++P+L 
Sbjct: 291 SFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILN 350

Query: 62  ILE------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            +             +   R + P  L+L PTRELA Q+ +  +K+     +  A+L GG
Sbjct: 351 QMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGG 410

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q ++L+RG  +++ TPGR+ D   RGK+ ++NI  LV+DEADRMLDMGF P I+ 
Sbjct: 411 NNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLDNIRFLVLDEADRMLDMGFEPQIRR 470

Query: 170 ITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I   +           +FSAT   ++Q+++ +FL N   + V    ST+E I    +  Y
Sbjct: 471 IVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVY 530

Query: 226 AQYSKKCALLQ----QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
               +   L      +           +IF   KK   +L   L +    V +IHG+  Q
Sbjct: 531 EPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQ 590

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           + R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P+  E Y+HRIGRTGR G 
Sbjct: 591 KEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGN 650

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
            G A +   +++      + +L+ +    +   +  ++
Sbjct: 651 LGVATSFFNEKNRNICSDLLELLIETKQEIPSFMEDMS 688


>gi|167921338|ref|ZP_02508429.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei BCC215]
          Length = 465

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 151/405 (37%), Positives = 222/405 (54%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 10  FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + L+L PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 70  LDA---RRFDVQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL++PKR+++      ++         Y     +      LL +
Sbjct: 187 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKI----RQRFYEVTEDERLHAVGLLLN 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF V A+HG ++QR R ++L  F   +  ++VA
Sbjct: 243 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHVLALHGELEQRERDQVLIRFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E Y+HRIGRTGRA + G A +L +  ++  +  IE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 362

Query: 362 KLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           + + ++V+W        G  + L PP+E + I      RK+   P
Sbjct: 363 QALAREVEWHPLAELKAGGDAPLLPPMETLQIL---GGRKDKIRP 404


>gi|167913398|ref|ZP_02500489.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 112]
          Length = 465

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 150/405 (37%), Positives = 221/405 (54%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 10  FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + L+L PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 70  LDA---RRFDVQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL++PKR+++      ++         Y     +      LL +
Sbjct: 187 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKI----RQRFYEVTEDERLHAVGLLLN 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 243 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E Y+HRIGRTGRA + G A +L +  ++  +  IE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 362

Query: 362 KLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           + + ++V+W        G  + L PP+E + I      RK+   P
Sbjct: 363 QALAREVEWHPLAELKAGGDAPLLPPMETLQIL---GGRKDKIRP 404


>gi|254176272|ref|ZP_04882930.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei ATCC 10399]
 gi|160697314|gb|EDP87284.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei ATCC 10399]
          Length = 476

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 150/405 (37%), Positives = 221/405 (54%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 21  FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 80

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + L+L PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 81  LDA---RRFDVQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 137

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 138 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 197

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL++PKR+++      ++         Y     +      LL +
Sbjct: 198 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKI----RQRFYEVTEDERLHAVGLLLN 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 254 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E Y+HRIGRTGRA + G A +L +  ++  +  IE
Sbjct: 314 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 373

Query: 362 KLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           + + ++V+W        G  + L PP+E + I      RK+   P
Sbjct: 374 QALAREVEWHPLAELKAGGDAPLLPPMETLQIL---GGRKDKIRP 415


>gi|76584014|gb|ABA53488.1| ATP-independent RNA helicase [Burkholderia pseudomallei 1710b]
          Length = 505

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 150/405 (37%), Positives = 221/405 (54%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 50  FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 109

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + L+L PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 110 LDA---RRFDVQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 166

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 167 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 226

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL++PKR+++      ++         Y     +      LL +
Sbjct: 227 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKI----RQRFYEVTEDERLHAVGLLLN 282

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 283 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVA 342

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E Y+HRIGRTGRA + G A +L +  ++  +  IE
Sbjct: 343 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 402

Query: 362 KLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           + + ++V+W        G  + L PP+E + I      RK+   P
Sbjct: 403 QALAREVEWHPLAELKAGGDAPLLPPMETLQIL---GGRKDKIRP 444


>gi|124381735|ref|YP_001025050.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei NCTC 10229]
 gi|126447168|ref|YP_001079394.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei NCTC 10247]
 gi|254356161|ref|ZP_04972438.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei 2002721280]
 gi|126240022|gb|ABO03134.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei NCTC 10247]
 gi|148025144|gb|EDK83313.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei 2002721280]
 gi|261826475|gb|ABN00540.2| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei NCTC 10229]
          Length = 463

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 150/405 (37%), Positives = 221/405 (54%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 10  FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + L+L PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 70  LDA---RRFDVQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL++PKR+++      ++         Y     +      LL +
Sbjct: 187 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKI----RQRFYEVTEDERLHAVGLLLN 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 243 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E Y+HRIGRTGRA + G A +L +  ++  +  IE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 362

Query: 362 KLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           + + ++V+W        G  + L PP+E + I      RK+   P
Sbjct: 363 QALAREVEWHPLAELKAGGDAPLLPPMETLQIL---GGRKDKIRP 404


>gi|53721181|ref|YP_110166.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei K96243]
 gi|121596589|ref|YP_990560.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei SAVP1]
 gi|126458103|ref|YP_001074245.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 1106a]
 gi|162210105|ref|YP_336816.2| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 1710b]
 gi|166999117|ref|ZP_02264963.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei PRL-20]
 gi|167722070|ref|ZP_02405306.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei DM98]
 gi|167741069|ref|ZP_02413843.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 14]
 gi|167818249|ref|ZP_02449929.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 91]
 gi|167826638|ref|ZP_02458109.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 9]
 gi|167848158|ref|ZP_02473666.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei B7210]
 gi|217422828|ref|ZP_03454330.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 576]
 gi|226198779|ref|ZP_03794343.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|242313771|ref|ZP_04812788.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1106b]
 gi|254182850|ref|ZP_04889443.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1655]
 gi|254189582|ref|ZP_04896092.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254264638|ref|ZP_04955503.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1710a]
 gi|254299641|ref|ZP_04967090.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           pseudomallei 406e]
 gi|52211595|emb|CAH37590.1| ATP-independent RNA helicase [Burkholderia pseudomallei K96243]
 gi|121224387|gb|ABM47918.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei SAVP1]
 gi|126231871|gb|ABN95284.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1106a]
 gi|157809522|gb|EDO86692.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           pseudomallei 406e]
 gi|157937260|gb|EDO92930.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|184213384|gb|EDU10427.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1655]
 gi|217393736|gb|EEC33756.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 576]
 gi|225929219|gb|EEH25242.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|242137010|gb|EES23413.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1106b]
 gi|243064681|gb|EES46867.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei PRL-20]
 gi|254215640|gb|EET05025.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1710a]
          Length = 465

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 150/405 (37%), Positives = 221/405 (54%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 10  FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + L+L PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 70  LDA---RRFDVQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL++PKR+++      ++         Y     +      LL +
Sbjct: 187 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKI----RQRFYEVTEDERLHAVGLLLN 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 243 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E Y+HRIGRTGRA + G A +L +  ++  +  IE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 362

Query: 362 KLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           + + ++V+W        G  + L PP+E + I      RK+   P
Sbjct: 363 QALAREVEWHPLAELKAGGDAPLLPPMETLQIL---GGRKDKIRP 404


>gi|159117719|ref|XP_001709079.1| Translation initiation factor eIF-4A, putative [Giardia lamblia
           ATCC 50803]
 gi|157437194|gb|EDO81405.1| Translation initiation factor eIF-4A, putative [Giardia lamblia
           ATCC 50803]
          Length = 391

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 114/377 (30%), Positives = 184/377 (48%), Gaps = 7/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L P ++  +   GY  P+ IQ + I  ++   D    AQ+GTGKTA+F + ML 
Sbjct: 21  KFDDMNLHPDLLFGIFTYGYKIPSAIQSQAIVPIISGKDTIAQAQSGTGKTAAFTIGMLQ 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++ G   ++ P+ +IL PTRELA Q     +  G    + VA  IGG   +      + 
Sbjct: 81  RIDIG---LKSPQAIILSPTRELALQTLKVVDGIGSRLKVQVAQCIGGTQVDDDIAAAQS 137

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +     +     N   + V+DEAD ML  GF   I +I   +    Q +
Sbjct: 138 CHLIVATPGRLLSLLQKKYVTTSNVKMV-VLDEADEMLSRGFTEQIVSIMKFMNADIQIV 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+++P  I V     T + I                 + + +  
Sbjct: 197 LVSATLPPEILELTRQFMRDPVSILVKEAELTLDGIRQ---YVVELQDAWKTEVVEDIYK 253

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             +++ G+IFCN    V  L   L+  G ++  IH  +DQ  R KI+  F+ G  ++++A
Sbjct: 254 VLSVQQGVIFCNSIGRVKELAEKLKSAGHTLSCIHSELDQAERNKIMGEFRSGQTRILIA 313

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +++ ARG+D+ +V  V N+D+P   E Y+HRIGR+GR GR G A   V  +D + + AI 
Sbjct: 314 TNIIARGIDVQNVSLVINYDIPREPETYLHRIGRSGRFGRKGVAINFVTDKDKQSMQAIT 373

Query: 362 KLIEKKVDWLNGDLSSL 378
                  + L  DLSSL
Sbjct: 374 DKFNVTTENLPEDLSSL 390


>gi|254514732|ref|ZP_05126793.1| RNA helicase DbpA [gamma proteobacterium NOR5-3]
 gi|219676975|gb|EED33340.1| RNA helicase DbpA [gamma proteobacterium NOR5-3]
          Length = 462

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 133/366 (36%), Positives = 207/366 (56%), Gaps = 6/366 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ L LSP    A+   GY   TP+Q +++PLVL+  DV   A+TG+GKTA+F + +L 
Sbjct: 5   DFSALPLSPAQFEALTALGYEHMTPVQAQSLPLVLKGRDVIARARTGSGKTAAFGIGLLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            +     R    + L+L PTRELA QV+    +          + +  G PF  Q   LE
Sbjct: 65  TI---NPRFFGVQALVLCPTRELAEQVSGELRRLASRMANIKLVTLCGGKPFGPQVGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRILDH  R  L ++ +++LV+DEADRMLDMGF   +++I S  P +RQT
Sbjct: 122 HGAHIVVGTPGRILDHLQRKTLSLDGLKVLVLDEADRMLDMGFADSMESIISETPKSRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + ++K+S +  ++P  + V+     A+ +         ++ +        L 
Sbjct: 182 LLFSATYPENIRKMSASIQRSPTMVTVDEDVGHADEVIEQLFFEVQKHER--NTTLLALF 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 N ++FCN KK    +   L++      AIHG+++QR R ++L  F   +  ++V
Sbjct: 240 EHYRPANAVVFCNTKKQCDEVAKILQEYDIEARAIHGDLEQRERDQVLVQFSNNSCPVLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++P   + Y+HRIGRTGRAG  G A ++V   + + I  I
Sbjct: 300 ATDVAARGLDIKALAMVINYELPRDPDVYVHRIGRTGRAGETGLAMSIVIPSETQRIRKI 359

Query: 361 EKLIEK 366
           E+  ++
Sbjct: 360 EEFQKQ 365


>gi|19113586|ref|NP_596794.1| ATP-dependent RNA helicase Dbp8 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|74654494|sp|Q9HGM5|DBP8_SCHPO RecName: Full=ATP-dependent RNA helicase dbp8
 gi|9929273|emb|CAC05248.1| ATP-dependent RNA helicase Dbp8 (predicted) [Schizosaccharomyces
           pombe]
          Length = 453

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 130/426 (30%), Positives = 215/426 (50%), Gaps = 17/426 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLG+SP ++  +      +PT IQ   I  +L+  +  G A+TG+GKTA+F LP++ 
Sbjct: 8   SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              K          LIL PTRELA Q+ + F   G N NL  AL++GG+    Q+  L +
Sbjct: 68  KWSK---DPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSK 124

Query: 122 GADVLICTPGRILDHFNRGKLLM----NNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              V++ TPGR+ D               I+ LV+DEADR+L   F   + +  S++P +
Sbjct: 125 RPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPAS 184

Query: 178 RQTLL--FSATMTDELQKVSENFLQNP----KRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                  F+AT+TD ++++     +N        EV T + +  +         +   ++
Sbjct: 185 EDRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVRE 244

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L+  L   ++  K+ IIF N+ +    +   L      V  +H  + QR R+  L  F
Sbjct: 245 AYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRF 304

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +    +++VA+D+A+RGLDIP V  V NFD+P   ++YIHR+GRT RAGR G++ ++V +
Sbjct: 305 RAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTE 364

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            D+  + AIE  +  K+     +  S N  LE I   +   A++   +     GF  R++
Sbjct: 365 RDVDLVHAIEDRVGTKLSEY--EHVSENKMLEYI--KEVTDAKRQASLEMIDRGFGERRQ 420

Query: 412 NYSSQK 417
             + ++
Sbjct: 421 KRNEKR 426


>gi|221502154|gb|EEE27898.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 479

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 120/429 (27%), Positives = 188/429 (43%), Gaps = 10/429 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL  ++  +V   G+  PT IQ + +P  LQ  D+  +A+TG+GKTA+F LP+L 
Sbjct: 52  TFASLGLCSELCASVSTLGWKSPTAIQSEVLPYALQGRDIIALAETGSGKTAAFGLPILQ 111

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R      LIL PTREL  Q++      G    +TV  L+GG+    Q   L +
Sbjct: 112 RLLQRTQRFYA---LILAPTRELCLQISQQILAMGGTLGVTVVTLVGGLDHNTQAIALAK 168

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ +PGR++DH  + K        +++ +    L          +      +    
Sbjct: 169 KPHVVVGSPGRVVDHLQQTKGFSLKSVKVLVLDEADRLLSLDFDAALQVLLEHVGSPAER 228

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
                      KVS+    + K+      +S  +   H          K           
Sbjct: 229 QTMLFSATMTTKVSKLQKASLKKPVKLEVNSKYDVASHLQQHFLLVPFKLKHTHLAAALL 288

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             +  + I+F N   N       L   GF    +HG + Q  R+  L+ F+      +VA
Sbjct: 289 HLSPSSVIVFTNTCANARKTALFLRHLGFQSVCLHGKMTQPQRIGALTKFRAAETSCLVA 348

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +++ +RGLDIP V  V NFDVP  ++ YIHR+GRT RAGR G+A T+V + D++    IE
Sbjct: 349 TEVGSRGLDIPHVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALTIVTQYDVEAYQRIE 408

Query: 362 KLIEKKVDWLNG--DLSSLNPPLEKIDIA---QHNHARKNNPIP--QKSTGFDRRKKNYS 414
             + +K++ L        + P  EK+  A       AR+ +     QK+    R   N  
Sbjct: 409 HALGQKLEELTELTATEKVMPLHEKVLEALRSAELEAREADEAALVQKAAKKKRGAGNKR 468

Query: 415 SQKSHIPLK 423
           S  +   +K
Sbjct: 469 SSGAGKKMK 477


>gi|187924463|ref|YP_001896105.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
 gi|187715657|gb|ACD16881.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 542

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 141/390 (36%), Positives = 213/390 (54%), Gaps = 24/390 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLS  VV A+  AGY  PTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 49  SFASLGLSADVVSALTAAGYQNPTPVQQRAIPAGIAGRDLMVSSPTGSGKTAAFMLPAIE 108

Query: 62  ILEK---------------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN 100
              +                         V  P  L+L PTRELA QV      YGK+  
Sbjct: 109 RFSQLQKAQASQPREPRPADGARTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLK 168

Query: 101 L-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159
                 ++GG+ +  Q   L +  ++L+ TPGR++DH  RG++ ++ ++ILV+DEADRML
Sbjct: 169 RLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRML 228

Query: 160 DMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
           DMGFI  I+ I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+         I  
Sbjct: 229 DMGFIEDIETIVAATPATRQTMLFSATLDGKITSLTGRLLKDPERIEIVQRLEQRTNIAQ 288

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                  +  K    L   L   + +   I+F   K +   L   L   GF   A+HG++
Sbjct: 289 TVHYVDDRDHKDR--LLDHLLRDEGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDL 346

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTGRA
Sbjct: 347 PQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRA 406

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           GR G A +LV   +   +  IE+ +   + 
Sbjct: 407 GRSGIAVSLVHHAEQGALKRIERFVRTPLP 436


>gi|237845351|ref|XP_002371973.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|61676032|gb|AAX51681.1| DEAD box RNA helicase [Toxoplasma gondii]
 gi|211969637|gb|EEB04833.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
          Length = 479

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 120/429 (27%), Positives = 188/429 (43%), Gaps = 10/429 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL  ++  +V   G+  PT IQ + +P  LQ  D+  +A+TG+GKTA+F LP+L 
Sbjct: 52  TFASLGLCSELCASVSTLGWKSPTAIQSEVLPYALQGRDIIALAETGSGKTAAFGLPILQ 111

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R      LIL PTREL  Q++      G    +TV  L+GG+    Q   L +
Sbjct: 112 RLLQRTQRFYA---LILAPTRELCLQISQQILAMGGTLGVTVVTLVGGLDHNTQAIALAK 168

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ +PGR++DH  + K        +++ +    L          +      +    
Sbjct: 169 KPHVVVGSPGRVVDHLQQTKGFSLKSVKVLVLDEADRLLSLDFDAALQVLLEHVGSPAER 228

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
                      KVS+    + K+      +S  +   H          K           
Sbjct: 229 QTMLFSATMTTKVSKLQKASLKKPVKLEVNSKYDVASHLQQHFLLVPFKLKHTHLAAALL 288

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             +  + I+F N   N       L   GF    +HG + Q  R+  L+ F+      +VA
Sbjct: 289 HLSPSSVIVFTNTCANARKTALFLRHLGFQSVCLHGKMTQPQRIGALTKFRAAETSCLVA 348

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +++ +RGLDIP V  V NFDVP  ++ YIHR+GRT RAGR G+A T+V + D++    IE
Sbjct: 349 TEVGSRGLDIPHVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALTIVTQYDVEAYQRIE 408

Query: 362 KLIEKKVDWLNG--DLSSLNPPLEKIDIA---QHNHARKNNPIP--QKSTGFDRRKKNYS 414
             + +K++ L        + P  EK+  A       AR+ +     QK+    R   N  
Sbjct: 409 HALGQKLEELTELTATEKVMPLHEKVLEALRSAELEAREADEAALVQKAAKKKRGAGNKR 468

Query: 415 SQKSHIPLK 423
           S  +   +K
Sbjct: 469 SSGAGKKMK 477


>gi|291060131|gb|ADD72866.1| dead-box ATP-dependent rna helicase ydbr [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 644

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 143/460 (31%), Positives = 234/460 (50%), Gaps = 41/460 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           + F +LGL+ + + AV   G+  PTPIQ   IP +L    ++   A+TGTGKTA+F LP+
Sbjct: 41  VSFEELGLNEQSLAAVRLKGFRCPTPIQAAAIPRLLAGDANIIAKARTGTGKTAAFGLPL 100

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  L         P  L+L PTRELAAQVA             +  + GG+    Q + L
Sbjct: 101 IQELGSPC---EHPGALVLVPTRELAAQVASELSSLRIQKIPRIHTVYGGVSIAEQLRNL 157

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G ++++ T GR++DH  RG L ++ +   ++DEAD ML+MGF+  I++I S      +
Sbjct: 158 EQGGEIIVGTTGRVIDHIERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDAR 217

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  ++  ++  F+ + + +E  TP      IE            +  +    +
Sbjct: 218 VLMFSATMPRQILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVVRDADKIEALVRLIDV 277

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   G++FC  K +   +  SL+++ + V A+HG+I Q  R KIL  F+    +++
Sbjct: 278 SDNFY---GLVFCQTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARIL 334

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV N+ +P+ +  Y HR+GRTGRAG  G A + V   + + ++ 
Sbjct: 335 VATDVAARGIDIEGITHVVNYSIPHDSATYTHRVGRTGRAGSQGIAISFVRPHETRRMEY 394

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           + K         NG+L +   PL      +H   +K   I             +SS K+H
Sbjct: 395 LSK-------HCNGELKASTVPL-----VEHILTQKEGRI-------------FSSLKTH 429

Query: 420 IPLKESEKISK---------LQQDIQENDADSLGFRGNMP 450
           +    SE +           LQ+D++   A++LG   ++P
Sbjct: 430 LCQLLSEGVHGTFTRFAQRLLQEDLKARVAEALGTSADVP 469


>gi|221487611|gb|EEE25843.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
          Length = 685

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 130/400 (32%), Positives = 200/400 (50%), Gaps = 20/400 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
            F + G    +   +    + +PT IQ    P  L   D+ GIAQTG+GKT  F+LP  +
Sbjct: 278 SFEETGFPTAIQNQLRKMNFAEPTAIQKIGWPTALSGRDMIGIAQTGSGKTLGFLLPGLV 337

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-------------YNLTVALL 106
               +   A+ + P  L+L PTRELA Q+     ++ +                   A +
Sbjct: 338 HAAAQPPLAQGQGPIVLVLAPTRELAMQIRHECMRFTEGLSLTSSEDPQRADTKFRTACV 397

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG+P + Q  +L  GA++LI TPGR++D  + G   +  +  +V+DEADRM+DMGF P 
Sbjct: 398 YGGVPRQGQATELRNGAEILIATPGRLIDFLDLGVTNLKRVSYIVLDEADRMMDMGFEPQ 457

Query: 167 IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
           ++ I S V   RQTLL+SAT   E++ ++  F +          +               
Sbjct: 458 VRKIFSQVRPDRQTLLWSATWPKEVRGLASEFCRTRVVKLQVGKADLQANANVTQRIEVV 517

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
             ++    L  +LQ + T +  +IFC  K+    LC  L  +     AIHG+ +QR R +
Sbjct: 518 SSNQLQHRLLSVLQEEVTGQKTLIFCETKRQCDQLCRELRYRQLRALAIHGDKEQRERDR 577

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
           IL +F++G  ++++A+D+A+RGLDI DV  V N+DVP   E+YIHRIGRTGRAG  G A 
Sbjct: 578 ILHDFRKGDCEILLATDVASRGLDIQDVKFVINYDVPKNIESYIHRIGRTGRAGNKGTAI 637

Query: 347 T-----LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           +       + E +     I +++         DL  +  P
Sbjct: 638 SFFQYDFYSPEKVTMARKICEVMRSVGQEPPADLEKIGAP 677


>gi|237830475|ref|XP_002364535.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|211962199|gb|EEA97394.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|221507408|gb|EEE33012.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
          Length = 685

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 130/400 (32%), Positives = 200/400 (50%), Gaps = 20/400 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
            F + G    +   +    + +PT IQ    P  L   D+ GIAQTG+GKT  F+LP  +
Sbjct: 278 SFEETGFPTAIQNQLRKMNFAEPTAIQKIGWPTALSGRDMIGIAQTGSGKTLGFLLPGLV 337

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-------------YNLTVALL 106
               +   A+ + P  L+L PTRELA Q+     ++ +                   A +
Sbjct: 338 HAAAQPPLAQGQGPIVLVLAPTRELAMQIRHECMRFTEGLSLASSEDPQRADTKFRTACV 397

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG+P + Q  +L  GA++LI TPGR++D  + G   +  +  +V+DEADRM+DMGF P 
Sbjct: 398 YGGVPRQGQATELRNGAEILIATPGRLIDFLDLGVTNLKRVSYIVLDEADRMMDMGFEPQ 457

Query: 167 IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
           ++ I S V   RQTLL+SAT   E++ ++  F +          +               
Sbjct: 458 VRKIFSQVRPDRQTLLWSATWPKEVRGLASEFCRTRVVKLQVGKADLQANANVTQRIEVV 517

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
             ++    L  +LQ + T +  +IFC  K+    LC  L  +     AIHG+ +QR R +
Sbjct: 518 SSNQLQHRLLSVLQEEVTGQKTLIFCETKRQCDQLCRELRYRQLRALAIHGDKEQRERDR 577

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
           IL +F++G  ++++A+D+A+RGLDI DV  V N+DVP   E+YIHRIGRTGRAG  G A 
Sbjct: 578 ILHDFRKGDCEILLATDVASRGLDIQDVKFVINYDVPKNIESYIHRIGRTGRAGNKGTAI 637

Query: 347 T-----LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           +       + E +     I +++         DL  +  P
Sbjct: 638 SFFQYDFYSPEKVTMARKICEVMRSVGQEPPADLEKIGAP 677


>gi|189025995|ref|YP_001933767.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum
           SS14]
 gi|189018570|gb|ACD71188.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum
           SS14]
          Length = 649

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 143/460 (31%), Positives = 234/460 (50%), Gaps = 41/460 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           + F +LGL+ + + AV   G+  PTPIQ   IP +L    ++   A+TGTGKTA+F LP+
Sbjct: 46  VSFEELGLNEQSLAAVRLKGFRCPTPIQAAAIPRLLAGDANIIAKARTGTGKTAAFGLPL 105

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  L         P  L+L PTRELAAQVA             +  + GG+    Q + L
Sbjct: 106 IQELGSPC---EHPGALVLVPTRELAAQVASELSSLRIQKIPRIHTVYGGVSIAEQLRNL 162

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G ++++ T GR++DH  RG L ++ +   ++DEAD ML+MGF+  I++I S      +
Sbjct: 163 EQGGEIIVGTTGRVIDHIERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDAR 222

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  ++  ++  F+ + + +E  TP      IE            +  +    +
Sbjct: 223 VLMFSATMPRQILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVVRDADKIEALVRLIDV 282

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   G++FC  K +   +  SL+++ + V A+HG+I Q  R KIL  F+    +++
Sbjct: 283 SDNFY---GLVFCQTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARIL 339

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV N+ +P+ +  Y HR+GRTGRAG  G A + V   + + ++ 
Sbjct: 340 VATDVAARGIDIEGITHVVNYSIPHDSATYTHRVGRTGRAGSQGIAISFVRPHETRRMEY 399

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           + K         NG+L +   PL      +H   +K   I             +SS K+H
Sbjct: 400 LSK-------HCNGELKASTVPL-----VEHILTQKEGRI-------------FSSLKTH 434

Query: 420 IPLKESEKISK---------LQQDIQENDADSLGFRGNMP 450
           +    SE +           LQ+D++   A++LG   ++P
Sbjct: 435 LCQLLSEGVHGTFTRFAQRLLQEDLKARVAEALGTSADVP 474


>gi|15639757|ref|NP_219207.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|3323078|gb|AAC65738.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum str.
           Nichols]
          Length = 649

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 143/460 (31%), Positives = 234/460 (50%), Gaps = 41/460 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           + F +LGL+ + + AV   G+  PTPIQ   IP +L    ++   A+TGTGKTA+F LP+
Sbjct: 46  VSFEELGLNEQSLAAVRLKGFRCPTPIQAAAIPRLLAGDANIIAKARTGTGKTAAFGLPL 105

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  L         P  L+L PTRELAAQVA             +  + GG+    Q + L
Sbjct: 106 IQELGSPC---EHPGALVLVPTRELAAQVASELSSLRIQKIPRIHTVYGGVSIAEQLRNL 162

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G ++++ T GR++DH  RG L ++ +   ++DEAD ML+MGF+  I++I S      +
Sbjct: 163 EQGGEIIVGTTGRVIDHIERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDAR 222

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM  ++  ++  F+ + + +E  TP      IE            +  +    +
Sbjct: 223 VLMFSATMPRQILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVVRDADKIEALVRLIDV 282

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   G++FC  K +   +  SL+++ + V A+HG+I Q  R KIL  F+    +++
Sbjct: 283 SDNFY---GLVFCQTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARIL 339

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV N+ +P+ +  Y HR+GRTGRAG  G A + V   + + ++ 
Sbjct: 340 VATDVAARGIDIEGITHVVNYSIPHDSATYTHRVGRTGRAGSQGIAISFVRPHETRRMEY 399

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           + K         NG+L +   PL      +H   +K   I             +SS K+H
Sbjct: 400 LSK-------HCNGELKASTVPL-----VEHILTQKEGRI-------------FSSLKTH 434

Query: 420 IPLKESEKISK---------LQQDIQENDADSLGFRGNMP 450
           +    SE +           LQ+D++   A++LG   ++P
Sbjct: 435 LCQLLSEGVHGTFTRFAQRLLQEDLKARVAEALGTSADVP 474


>gi|91784149|ref|YP_559355.1| putative ATP-dependent RNA helicase [Burkholderia xenovorans LB400]
 gi|91688103|gb|ABE31303.1| Putative ATP-dependent RNA helicase [Burkholderia xenovorans LB400]
          Length = 537

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 141/389 (36%), Positives = 212/389 (54%), Gaps = 24/389 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLS  VV A+  AGY  PTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 49  SFASLGLSADVVSALTAAGYQNPTPVQQRAIPAGIAGRDLMVSSPTGSGKTAAFMLPAIE 108

Query: 62  ILEK---------------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN 100
              +                         V  P  L+L PTRELA QV      YGK+  
Sbjct: 109 RFSQLQKTQAGQPREPRPADGARTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLK 168

Query: 101 L-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159
                 ++GG+ +  Q   L +  ++L+ TPGR++DH  RG++ ++ ++ILV+DEADRML
Sbjct: 169 RLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRML 228

Query: 160 DMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
           DMGFI  I+ I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+         I  
Sbjct: 229 DMGFIEDIETIVAATPATRQTMLFSATLDGKITSLTGRLLKDPERIEIVQRMEQRTNIAQ 288

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                  +  K    L   L     +   I+F   K +   L   L   GF   A+HG++
Sbjct: 289 TVHYVDDRDHKDR--LLDHLLRDSGLDQAIVFTATKIDADQLAGRLADAGFESAALHGDL 346

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTGRA
Sbjct: 347 PQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRA 406

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           GR G A +LV   +   +  IE+ +   +
Sbjct: 407 GRSGIAVSLVHHAEQGALKRIERFVRTPL 435


>gi|328865714|gb|EGG14100.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 1076

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 133/366 (36%), Positives = 209/366 (57%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   +  AV+  G+ +PTPIQ  TIPL+L+  DV G+A+TG+GKTA+FV+PM+  
Sbjct: 270 FQGMDLHKFLFKAVMKKGFKQPTPIQRLTIPLILEGQDVVGMARTGSGKTAAFVIPMIQK 329

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +   +V   R +IL PTRELA Q     ++     +L   +++GG     Q  +L R 
Sbjct: 330 LAQHSHKVGA-RAIILSPTRELALQTYRVVKELSSGSDLRSCVIVGGDNMADQFTELARN 388

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++ H     + ++ ++ +V DEADR+ +MGF   +Q I + +  +RQTLL
Sbjct: 389 PDIIIATPGRLVHHLTEVNMGLHTVQYIVFDEADRLFEMGFADQLQEIITKLSPSRQTLL 448

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L +     L NPK + +NT +  ++ +   F  T     K  ALL  L    
Sbjct: 449 FSATLPSMLAEFVRAGLSNPKLVRLNTDTKISDQLSLSF-FTCRHDEKFAALLYLLKDII 507

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+F   K +V  L   L++   +   IHG +D  +R   L+ F+   + +MV +
Sbjct: 508 KDDEPTIVFTATKFHVEYLHILLDQARIANTFIHGQMDPVARKINLAKFRSKVVNVMVVT 567

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARG+DIP + +V NFD   + + +IHR+GR  RAGR G A++LV+ ++I ++  +  
Sbjct: 568 DLAARGIDIPMLDNVINFDFAPKEKIFIHRVGRVARAGRKGTAYSLVSPDEIPYMLDLHL 627

Query: 363 LIEKKV 368
            I KK+
Sbjct: 628 YIAKKL 633


>gi|195330652|ref|XP_002032017.1| GM26328 [Drosophila sechellia]
 gi|194120960|gb|EDW43003.1| GM26328 [Drosophila sechellia]
          Length = 797

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 132/398 (33%), Positives = 206/398 (51%), Gaps = 20/398 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L+  +   V  A Y KPTP+Q   IP+++   D+   AQTG+GKTA+F++P+L 
Sbjct: 295 SFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILN 354

Query: 62  ILE------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            +             +   R + P  L+L PTRELA Q+ +  +K+     +  A+L GG
Sbjct: 355 QMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGG 414

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q ++L+RG  +++ TPGR+ D   RGK+ + NI  LV+DEADRMLDMGF P I+ 
Sbjct: 415 NNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRR 474

Query: 170 ITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I   +           +FSAT   ++Q+++ +FL N   + V    ST+E I    +  Y
Sbjct: 475 IVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVY 534

Query: 226 AQYSKKCALLQ----QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
               +   L      +           +IF   KK   +L   L +    V +IHG+  Q
Sbjct: 535 EPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQ 594

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           + R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P+  E Y+HRIGRTGR G 
Sbjct: 595 KEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGN 654

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
            G A +   +++      + +L+ +    +   +  ++
Sbjct: 655 LGVATSFFNEKNRNICSDLLELLIETKQEIPSFMEDMS 692


>gi|171315596|ref|ZP_02904831.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
 gi|171099267|gb|EDT44026.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
          Length = 465

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 149/422 (35%), Positives = 220/422 (52%), Gaps = 24/422 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GYV  TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 9   FSALPLTPAALANLTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + ++L PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 69  LDT---RRFDVQAMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  RG L ++ +  LV+DEADRMLDMGF   I  +  + P TRQTL
Sbjct: 126 GAHIVVGTPGRIMDHLERGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ F     R                    Y     +       L +
Sbjct: 186 LFSATYPDGIAKLSQQF----LRNPKEVKLEERHDNSKIRQRFYEVTETERLHAVGQLLN 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 242 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 361

Query: 362 KLIEKKVDWLN-GDLS-----SLNPPLEKIDIAQHNHARKNNPIP-------QKSTGFDR 408
           + ++++V+W    +L      +L PP+E + I      RK+   P           GFD 
Sbjct: 362 QALKREVEWHPLAELKPAGNDTLLPPMETLQIL---GGRKDKIRPGDVLGALTGDAGFDG 418

Query: 409 RK 410
           ++
Sbjct: 419 KQ 420


>gi|170040294|ref|XP_001847939.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167863866|gb|EDS27249.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 818

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 136/436 (31%), Positives = 220/436 (50%), Gaps = 40/436 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + G   +V+  +   GY +PTPIQ + IP+ LQ  D+ GIA+TG+GKT +F++P+L 
Sbjct: 391 SWKESGFPKEVLEIIDKVGYKEPTPIQRQAIPIGLQNRDIIGIAETGSGKTLAFLIPLLN 450

Query: 62  ILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            ++      +     + P  +IL PTRELA Q+ +  +K+G+   +   +++GG+  E Q
Sbjct: 451 WIQGLPKIERQETADQGPYAIILAPTRELAQQIEEETQKFGQPLGIRTVVVVGGLSREEQ 510

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 511 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVMDEADRMIDMGFEPDVQKILEYMP 570

Query: 176 -------------------------FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
                                      RQT++F+ATM   +++++  +L+ P  + + + 
Sbjct: 571 VTNLKPDTEEAEDATKLMENFNTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSV 630

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               E  E           +K  +       +      IIF NQKK    L   LEK G+
Sbjct: 631 GKPTERTEQIVHIVTENEKRKKLMEILSRGVEPPC---IIFVNQKKGADVLAKGLEKLGY 687

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           + C +HG   Q  R   L++ K G+  ++VA+D+A RG+DI DV  V N+D+    E+Y 
Sbjct: 688 NACTLHGGKGQEQREYALASLKNGSKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYT 747

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A +   K+D      ++++I      +   +SS  P L     AQH
Sbjct: 748 HRIGRTGRAGKTGCAISFCTKDDSHLFYDLKQII------VASPVSSCPPELMNHPDAQH 801

Query: 391 NHARKNNPIPQKSTGF 406
                     ++   F
Sbjct: 802 KPGTVVTKKRREEKIF 817


>gi|170029482|ref|XP_001842621.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Culex
           quinquefasciatus]
 gi|167863205|gb|EDS26588.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Culex
           quinquefasciatus]
          Length = 815

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 136/436 (31%), Positives = 220/436 (50%), Gaps = 40/436 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + G   +V+  +   GY +PTPIQ + IP+ LQ  D+ GIA+TG+GKT +F++P+L 
Sbjct: 388 SWKESGFPKEVLEIIDKVGYKEPTPIQRQAIPIGLQNRDIIGIAETGSGKTLAFLIPLLN 447

Query: 62  ILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            ++      +     + P  +IL PTRELA Q+ +  +K+G+   +   +++GG+  E Q
Sbjct: 448 WIQGLPKIERQETADQGPYAIILAPTRELAQQIEEETQKFGQPLGIRTVVVVGGLSREEQ 507

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 508 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVMDEADRMIDMGFEPDVQKILEYMP 567

Query: 176 -------------------------FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
                                      RQT++F+ATM   +++++  +L+ P  + + + 
Sbjct: 568 VTNLKPDTEEAEDATKLMENFNTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSV 627

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               E  E           +K  +       +      IIF NQKK    L   LEK G+
Sbjct: 628 GKPTERTEQIVHIVTENEKRKKLMEILSRGVEPPC---IIFVNQKKGADVLAKGLEKLGY 684

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           + C +HG   Q  R   L++ K G+  ++VA+D+A RG+DI DV  V N+D+    E+Y 
Sbjct: 685 NACTLHGGKGQEQREYALASLKNGSKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYT 744

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A +   K+D      ++++I      +   +SS  P L     AQH
Sbjct: 745 HRIGRTGRAGKTGCAISFCTKDDSHLFYDLKQII------VASPVSSCPPELMNHPDAQH 798

Query: 391 NHARKNNPIPQKSTGF 406
                     ++   F
Sbjct: 799 KPGTVVTKKRREEKIF 814


>gi|17985987|ref|NP_536783.1| belle [Drosophila melanogaster]
 gi|74947986|sp|Q9VHP0|DDX3_DROME RecName: Full=ATP-dependent RNA helicase bel; AltName: Full=Protein
           belle
 gi|7299061|gb|AAF54262.1| belle [Drosophila melanogaster]
          Length = 798

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 132/398 (33%), Positives = 206/398 (51%), Gaps = 20/398 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L+  +   V  A Y KPTP+Q   IP+++   D+   AQTG+GKTA+F++P+L 
Sbjct: 296 SFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILN 355

Query: 62  ILE------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            +             +   R + P  L+L PTRELA Q+ +  +K+     +  A+L GG
Sbjct: 356 QMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGG 415

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q ++L+RG  +++ TPGR+ D   RGK+ + NI  LV+DEADRMLDMGF P I+ 
Sbjct: 416 NNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRR 475

Query: 170 ITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I   +           +FSAT   ++Q+++ +FL N   + V    ST+E I    +  Y
Sbjct: 476 IVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVY 535

Query: 226 AQYSKKCALLQ----QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
               +   L      +           +IF   KK   +L   L +    V +IHG+  Q
Sbjct: 536 EPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQ 595

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           + R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P+  E Y+HRIGRTGR G 
Sbjct: 596 KEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGN 655

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
            G A +   +++      + +L+ +    +   +  ++
Sbjct: 656 LGVATSFFNEKNRNICSDLLELLIETKQEIPSFMEDMS 693


>gi|148613133|gb|ABQ96191.1| vasa [Scaptotrigona postica]
 gi|205318891|gb|ACI02437.1| vasa [Frieseomelitta varia]
          Length = 624

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 126/386 (32%), Positives = 201/386 (52%), Gaps = 16/386 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL   V+  +  +GY KPTP+Q   +P+++   D+   AQTG+GKTA+F +P++ 
Sbjct: 195 SFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPIIN 254

Query: 62  ILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            L +             P+ +I+ PTREL  Q+     K+  N  L   +  GG     Q
Sbjct: 255 TLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQ 314

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL  G  +L+ TPGR+LD   +G++  ++++ LV+DEADRMLDMGF+P I+ +     
Sbjct: 315 RGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHET 374

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTL+FSAT  DE+Q ++  FL N   + V         +   F        K 
Sbjct: 375 MVPLGERQTLMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACSDVGRNFYEVARNKKKD 434

Query: 232 -CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
               + +      T+   ++F   KK    +   L +  +   +IHG+  QR R + L++
Sbjct: 435 LLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALAD 494

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G + ++VA+ +AARGLDI +V HV N+D+P   + Y+HRIGRTGR G  G+A +   
Sbjct: 495 FKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRATSFFD 554

Query: 351 KEDIKHID-AIEKLIEKK----VDWL 371
            E+   +   + +++++      DW+
Sbjct: 555 PEEDAPLRGDLVRILKQANQSVPDWM 580


>gi|146161285|ref|XP_977099.2| Type III restriction enzyme, res subunit family protein
           [Tetrahymena thermophila]
 gi|146146797|gb|EAR86377.2| Type III restriction enzyme, res subunit family protein
           [Tetrahymena thermophila SB210]
          Length = 440

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 112/433 (25%), Positives = 195/433 (45%), Gaps = 4/433 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL   +       GY  PT IQ   IP +L++  V   A+TG+GKTA+F  P+L  
Sbjct: 4   FAKLGLDSWIQKTCDKVGYQNPTKIQELAIPPLLRKQHVIANAETGSGKTATFAFPILQD 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K    V               ++    F         T+   +      ++ +++   
Sbjct: 64  LAKDPFGVFAIVLTANRELAMQISEQFTIFGSSLNLRVSTLVGGVDFNKQLSELERIPHI 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
                     ++D     K  + N++ LV+DEADR+ +   I  IQ+I   +P  +Q +L
Sbjct: 124 VVGTPGRTLDMIDKSPVLKEYIENVKYLVLDEADRLFEDSIIEDIQSILEFIPQEKQIIL 183

Query: 183 FS-ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            +     D   K     L+   + E    +   + ++                    L +
Sbjct: 184 ATATINDDFNDKKLNEILKTNVKFERFCVNQQKKVVQTLKQKFVLVPEMVKDQNFINLLN 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + IIF N+ +    +   L +  FS  ++H  + Q  R+  L  FK     ++VA
Sbjct: 244 KFKGISMIIFVNKCRTCHFINALLNQLEFSSTSLHSGLKQGQRISHLKTFKSQAANILVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDIP V  V N+D+P  +++YIHR+GRT R G+ G A +++ + D++ I  IE
Sbjct: 304 TDVASRGLDIPTVDLVINYDIPKNSDDYIHRVGRTARKGKRGLAISIMTQYDVQLILNIE 363

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           K I +K++ L  D         K++ A+     K +     S  FD+++++  S K  I 
Sbjct: 364 KNIGEKLEELKVDEEEALEIAPKVNKAKKFVKIKMSE-DGSSENFDKQEQDKKSYKEFI- 421

Query: 422 LKESEKISKLQQD 434
            +E +K+ K++ +
Sbjct: 422 -REQKKLKKVENN 433


>gi|289825492|ref|ZP_06544699.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 415

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 138/388 (35%), Positives = 211/388 (54%), Gaps = 6/388 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP + 
Sbjct: 5   TFSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT   D ++  +E  L++P  +  N  +   + I   +        K      + L
Sbjct: 185 MLFSATLEGDAIKDFAERLLEDPVEVSANPSTRERKKIHQWYYRADNFEHKVAL--LKHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             QD     I+F  +++ V  L  +L   G + C + G + Q  R + +    +G + ++
Sbjct: 243 LKQDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIPDV HV NFD+P   + Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLLLK 362

Query: 360 IEKLIEKKVDWLNGDL--SSLNPPLEKI 385
           I + IE+ +     D    +   P EK+
Sbjct: 363 IGRYIEEPLKARVIDELRPTTRAPSEKL 390


>gi|116193535|ref|XP_001222580.1| ATP-dependent RNA helicase [Chaetomium globosum CBS 148.51]
 gi|118577976|sp|Q2H4D0|SUB2_CHAGB RecName: Full=ATP-dependent RNA helicase SUB2
 gi|88182398|gb|EAQ89866.1| ATP-dependent RNA helicase [Chaetomium globosum CBS 148.51]
          Length = 434

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 150/375 (40%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q   IP  +   D+   A++G GKTA FVL  L  
Sbjct: 52  FRDFLLKPELLRAIADCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQ 111

Query: 63  LEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +E   G   V +         +        +         +           E    K  
Sbjct: 112 VEPVAGECSVLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEVLKNKET 171

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++           ++   L N    ++ +    +  +     +Q I    P  +Q 
Sbjct: 172 HPHIIVGTPGRLNALVRDKHLRLGNVRMFVLDECDKMLDQIDMRRDVQEIFRATPQQKQV 231

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT+ DE++ +   F+QNP    V+  +         +     +  K   L +    
Sbjct: 232 MMFSATLADEIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIPLEEREKNRKLNEL--L 289

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      IIF         L   L +  F   A+H  + Q  R++    FKE   ++ V
Sbjct: 290 DELQFNQVIIFVKSTIRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICV 349

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           A+D+  RG+DI  +    N+D+P  A++Y+HR+GR GR G  G A + V + +D + +  
Sbjct: 350 ATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVNSDQDKEVLQQ 409

Query: 360 IEKLIEKKVDWLNGD 374
           IEK  E  +     +
Sbjct: 410 IEKRFEVALPEFPKE 424


>gi|19528473|gb|AAL90351.1| RE28061p [Drosophila melanogaster]
          Length = 798

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 132/398 (33%), Positives = 206/398 (51%), Gaps = 20/398 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L+  +   V  A Y KPTP+Q   IP+++   D+   AQTG+GKTA+F++P+L 
Sbjct: 296 SFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILN 355

Query: 62  ILE------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            +             +   R + P  L+L PTRELA Q+ +  +K+     +  A+L GG
Sbjct: 356 QMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGG 415

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q ++L+RG  +++ TPGR+ D   RGK+ + NI  LV+DEADRMLDMGF P I+ 
Sbjct: 416 NNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRR 475

Query: 170 ITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I   +           +FSAT   ++Q+++ +FL N   + V    ST+E I    +  Y
Sbjct: 476 IVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYTFLAVGRVGSTSENITQTILWVY 535

Query: 226 AQYSKKCALLQ----QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
               +   L      +           +IF   KK   +L   L +    V +IHG+  Q
Sbjct: 536 EPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQ 595

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           + R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P+  E Y+HRIGRTGR G 
Sbjct: 596 KEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGN 655

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
            G A +   +++      + +L+ +    +   +  ++
Sbjct: 656 LGVATSFFNEKNRNICSDLLELLIETKQEIPSFMEDMS 693


>gi|88704045|ref|ZP_01101760.1| ATP-dependent RNA helicase rhlB [Congregibacter litoralis KT71]
 gi|88701872|gb|EAQ98976.1| ATP-dependent RNA helicase rhlB [Congregibacter litoralis KT71]
          Length = 427

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 123/371 (33%), Positives = 192/371 (51%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F DL L P ++  + + G+   +PIQ + +P  LQ HD  G AQTGTGKTA+F++ +   
Sbjct: 46  FHDLDLHPTLMHGIAEIGFEYCSPIQAQILPHTLQGHDAIGKAQTGTGKTAAFLITIFDD 105

Query: 62  ---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 +G   +  PR L++ PTREL  Q+A + E  GK+  L    LIGG+ ++ Q  +
Sbjct: 106 LLKHPHEGERFLGEPRALVIAPTRELVMQIAADAEDLGKHTGLNTCTLIGGMDYQKQLNQ 165

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 D+++ TPGR++D   R  L+++ +E+LV+DEADRMLDMGFIP ++ I    P  
Sbjct: 166 LGREVVDLVVATPGRLIDFTGRRDLVLDQVEVLVLDEADRMLDMGFIPQVKRIVRQTPHK 225

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
                   + T   Q +     Q                 +      Y   S++   +  
Sbjct: 226 DYRQTLLFSAT-FTQDIINLSQQWTTDAITIEIEPDHVATDSVDQRIYLASSEERFRILV 284

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   D   + I+F N++  V  L   L K   +   + G I Q  R K L  FK+G I 
Sbjct: 285 NLLRSDDASSVIVFANRRDQVRRLFERLRKASITCGMLSGEIAQAKRTKTLDQFKKGEIS 344

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A RG+ +  V HV N+++P   E+Y+HRIGRTGRAG  G + +  +++D   +
Sbjct: 345 VLVATDVAGRGIHVDGVTHVVNYNLPEDPEDYVHRIGRTGRAGASGTSISFASEDDAFLL 404

Query: 358 DAIEKLIEKKV 368
             +E L+ + V
Sbjct: 405 PDLEALLGEPV 415


>gi|195499159|ref|XP_002096830.1| bel [Drosophila yakuba]
 gi|194182931|gb|EDW96542.1| bel [Drosophila yakuba]
          Length = 792

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 132/398 (33%), Positives = 206/398 (51%), Gaps = 20/398 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L+  +   V  A Y KPTP+Q   IP+++   D+   AQTG+GKTA+F++P+L 
Sbjct: 291 SFDDVQLTEIIRNNVALARYDKPTPVQKYAIPIIINGRDLMACAQTGSGKTAAFLVPILN 350

Query: 62  ILE------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            +             +   R + P  L+L PTRELA Q+ +  +K+     +  A+L GG
Sbjct: 351 QMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGG 410

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q ++L+RG  +++ TPGR+ D   RGK+ + NI  LV+DEADRMLDMGF P I+ 
Sbjct: 411 NNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRR 470

Query: 170 ITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I   +           +FSAT   ++Q+++ +FL N   + V    ST+E I    +  Y
Sbjct: 471 IVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVY 530

Query: 226 AQYSKKCALLQ----QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
               +   L      +           +IF   KK   +L   L +    V +IHG+  Q
Sbjct: 531 EPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQ 590

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           + R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P+  E Y+HRIGRTGR G 
Sbjct: 591 KEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGN 650

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
            G A +   +++      + +L+ +    +   +  ++
Sbjct: 651 LGVATSFFNEKNRNICSDLLELLIETKQEIPSFMEDMS 688


>gi|67526005|ref|XP_661064.1| hypothetical protein AN3460.2 [Aspergillus nidulans FGSC A4]
 gi|40743814|gb|EAA63000.1| hypothetical protein AN3460.2 [Aspergillus nidulans FGSC A4]
          Length = 1548

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 124/429 (28%), Positives = 195/429 (45%), Gaps = 62/429 (14%)

Query: 1    MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            ++F D  +  +++  + +AG+ KP+PIQ +TIP+ L   D+   A+ GTGKTA+FV+P L
Sbjct: 1134 LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTL 1193

Query: 61   TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +     + +    LIL PTRELA Q +   +  GK+  + V +  GG        +L 
Sbjct: 1194 ERINPKSTKTQ---ALILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRLN 1250

Query: 121  RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
                +L+ TPGR+LD  ++G   ++     V+DEAD++L   F P I+ + S  P  RQ 
Sbjct: 1251 DAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQV 1310

Query: 181  LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +LFSAT    +                                                 
Sbjct: 1311 MLFSATFPMIV------------------------------------------------- 1321

Query: 241  SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +   IIFCN    V  L   + + G+S    H  + Q+ R ++  +F+ G  + +V
Sbjct: 1322 KSFKINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLV 1381

Query: 301  ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
             SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 1382 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKI 1441

Query: 361  EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF------DRRKKNYS 414
            E+ +  ++  +     +++  L   D         +NP PQ+S G         R+ N+ 
Sbjct: 1442 EQELGTEIQPIP---QNIDKKLYVYDSPDTIPRPISNP-PQQSQGATAASNPSDRRHNHH 1497

Query: 415  SQKSHIPLK 423
            +   H   K
Sbjct: 1498 TNGGHYQSK 1506


>gi|195502160|ref|XP_002098101.1| GE24123 [Drosophila yakuba]
 gi|194184202|gb|EDW97813.1| GE24123 [Drosophila yakuba]
          Length = 719

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 132/382 (34%), Positives = 209/382 (54%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+++ L   V+  +   GY  PT IQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 284 DFSEVYLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIV 343

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   +   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 344 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 403

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 404 QRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 463

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--- 236
           TL++SAT   E+++++E+FL N  +I + +   +A       V    ++SK+  L     
Sbjct: 464 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLS 523

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +  + ++    IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G  
Sbjct: 524 DIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 583

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + K 
Sbjct: 584 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 643

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
             A+  ++ +    +N  L +L
Sbjct: 644 AKALVDVLREANQEINPALENL 665


>gi|194898941|ref|XP_001979021.1| GG10666 [Drosophila erecta]
 gi|190650724|gb|EDV47979.1| GG10666 [Drosophila erecta]
          Length = 720

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 132/382 (34%), Positives = 209/382 (54%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+++ L   V+  +   GY  PT IQ +  P+ +   +  GIA+TG+GKT  ++LP + 
Sbjct: 282 DFSEVYLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIV 341

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   +   R   P  L+L PTRELA Q+     ++G +  +    + GG P   Q + L
Sbjct: 342 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 401

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG +++I TPGR++D  + G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 402 QRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 461

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--- 236
           TL++SAT   E+++++E+FL N  +I + +   +A       V    ++SK+  L     
Sbjct: 462 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLS 521

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +  + ++    IIF   K+ V NL   +   G    AIHG+  Q  R  +L  F+ G  
Sbjct: 522 DIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 581

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR+   G +F    K + K 
Sbjct: 582 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 641

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
             A+  ++ +    +N  L +L
Sbjct: 642 AKALVDVLREANQEINPALENL 663


>gi|332534579|ref|ZP_08410414.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035999|gb|EGI72478.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 442

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 128/432 (29%), Positives = 208/432 (48%), Gaps = 9/432 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLG+  ++   +   G  +PT IQ   +P  L  HD+   ++TG+GKT +F+LP +
Sbjct: 1   MQFTDLGIDTRLETQLAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAV 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + K +A   R PR LI+ PTRELA QV            +    ++GG  F  Q K L
Sbjct: 61  QRVMKQKALSKRDPRVLIVAPTRELATQVFTQLRLLIAGTAIKAVKILGGENFNDQIKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                 ++ TPGR+ DH  +  L ++ +E+L+ DEADR+LD+GF   ++ I        +
Sbjct: 121 RNDPQFVVATPGRLADHITKRSLQLSGLELLIFDEADRILDLGFTEQLKMINEQANHRLR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  Q  + +     K  ++   ++  +  +       A +      L +  
Sbjct: 181 QTLLFSATLDHAQVDALSRNLLKKPKQITLSAANEQHSDIKQTLYLADHLDHKEALLEHF 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +QD +   IIF   + +   L  +L  +GF   A+ G++ Q  R+ I+ +F     +++
Sbjct: 241 LNQDDVGQCIIFTATRSDTSRLSEALNAKGFKSVALAGDLTQNKRLDIMDSFSRENFKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+A+RGLD+  V HV NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D     A
Sbjct: 301 ITTDVASRGLDLLSVTHVINFDLPKHAEEYVHRIGRTGRAGFKGNAISLVGPKDWASYLA 360

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNYSSQ 416
           I+  +  ++ +    + SL    + +   +   A    K      K   F R+ K    +
Sbjct: 361 IKAFLNDELKF--ASVESLKAKFKGLKEKKPEAAWDKSKEKAAAVKKPAFKRKAK---PK 415

Query: 417 KSHIPLKESEKI 428
           K   P+K    I
Sbjct: 416 KPTAPIKAPMNI 427


>gi|319951635|ref|YP_004162902.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM
           14237]
 gi|319420295|gb|ADV47404.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM
           14237]
          Length = 633

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 129/368 (35%), Positives = 215/368 (58%), Gaps = 8/368 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F  LGL   ++ A+ D G+  P+ +Q K IP++L    D+  +AQTGTGKTA+F  P++
Sbjct: 3   KFEALGLKKSILDAITDMGFETPSDVQEKAIPILLGDDTDLVALAQTGTGKTAAFGFPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             ++      R  + LIL PTREL  Q+ +  + Y K       + I G      Q +++
Sbjct: 63  QKIDA---DSRTTQGLILSPTRELCLQITNEMQSYSKYEKNINVVAIYGGASITDQARQI 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RGA +++ TPGR+ D  +RG + ++ I+  ++DEAD ML+MGF   I+ I S  P  + 
Sbjct: 120 KRGAQIIVATPGRMKDMMSRGLVDISKIDYCILDEADEMLNMGFFEDIKEILSDTPKEKS 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM  E+  +++ F+++P+ I V   +S A T++H     Y    +      + L
Sbjct: 180 TWLFSATMPREVATIAKKFMRSPQEITVGAKNSGASTVQH---EYYVVSGRDRYPALKRL 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     +IFC  K++   +  SL + G++  A+HG++ Q  R  ++S+F++  IQ++
Sbjct: 237 ADTNPDIFSVIFCRTKRDTQKVAESLIEDGYNAGALHGDLSQNQRDLVMSSFRKKQIQIL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ D+ HV N+ +P+  E Y HR GRTGRAG+ G +  ++ + +++ I A
Sbjct: 297 VATDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIITRSELRKIKA 356

Query: 360 IEKLIEKK 367
           IE  I +K
Sbjct: 357 IENKIGQK 364


>gi|195021969|ref|XP_001985492.1| GH14471 [Drosophila grimshawi]
 gi|193898974|gb|EDV97840.1| GH14471 [Drosophila grimshawi]
          Length = 603

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 115/477 (24%), Positives = 210/477 (44%), Gaps = 45/477 (9%)

Query: 2   DFADLG-----LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFV 56
            F +L      L P++   +L  G+ +PT IQ++ +P++L    +   A TG+GKT +F+
Sbjct: 118 SFDELNSPHYNLLPRLQENLLSYGFAQPTAIQMQALPVLLANRALMACAPTGSGKTLAFL 177

Query: 57  LPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFE 113
            P++  L     +    R L+L PTRELA Q+     +  ++  L    +          
Sbjct: 178 TPIINSLRS--HKTTGLRALVLAPTRELAQQIYRECGELTRSTGLRTHFISKVSEARQQH 235

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN---- 169
               K +    +      R +       L +  IE  V+DEADR+++ G   + +     
Sbjct: 236 GPECKQKYDILISTPNRVRFMLQQQPPLLDLKGIEWFVLDEADRLMEEGQNNFKEQLDDI 295

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
             +     ++   FSAT T  + K +   L+N  RI +   +S  +T++   +   ++  
Sbjct: 296 YAACTHAQKRVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATDTVQQELLFVGSESG 355

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K  A+ +  +         ++F   K+    L   L   G +V  IH    Q  R   + 
Sbjct: 356 KLLAVRE--MVRNGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERTQHQRDNCVR 413

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+EG I +++ ++L  RG+D   V  V N+D P    +YIHRIGRTGRAGR G+A T  
Sbjct: 414 AFREGHIWVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFF 473

Query: 350 AKEDIKHIDAIEKLIE-------------KKVDWLNGDLSSLNPPLEKIDIAQH------ 390
            ++D  ++ ++ ++I              KKV      + +   PLE+ DI+        
Sbjct: 474 TQDDTANLRSVAQIIRNSGGKVPEYMLQMKKVRKSEAKVRA-KKPLEREDISTKIRPEIP 532

Query: 391 -------NHARKNNPIPQKSTGFDRRKKNYSSQKS--HIPLKESEKISKLQQDIQEN 438
                     +    + Q++       ++ +S KS   +P ++ +K++K+++ I+  
Sbjct: 533 KNFVQLQKVEKTEKVLKQQAKAKKNMNQDNNSAKSSDSVPSRKVKKLAKIKEQIKSK 589


>gi|121701983|ref|XP_001269256.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
 gi|143359917|sp|A1CQA9|PRP5_ASPCL RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|119397399|gb|EAW07830.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
          Length = 1192

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 129/438 (29%), Positives = 211/438 (48%), Gaps = 18/438 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL  + +  +   GY  PT IQ + IP ++   DV G+A+TG+GKT +F++PM  
Sbjct: 558 KWSQCGLGVQALDVIERLGYESPTSIQSQAIPAIMSGRDVIGVAKTGSGKTVAFLIPMFR 617

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++  R    +  P  LI+ PTRELA Q+  + + + K  NL      GG P + Q   L
Sbjct: 618 HIKDQRPLDNMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADL 677

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D           +  +  +V+DEADRM DMGF P +  I + +  
Sbjct: 678 KRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRP 737

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC---A 233
            RQT+LFSAT    ++ ++   L  P  I V   S  A  I                   
Sbjct: 738 DRQTVLFSATFPRNMEALARKALTKPIEIIVGGRSVVAPEITQIVEVRNEDTKFVRLLEI 797

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L        +     +IF  +++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 798 LGNLYSDDANEDARSLIFVERQEAADALLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKA 857

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + +E 
Sbjct: 858 GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQ 917

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            ++   I K +++    +   +  + +  LEK+   +   +         ++GF  +   
Sbjct: 918 ERYSVDIAKALKQSGQQVPEPVQKMVDSFLEKVKAGKEKAS---------ASGFGGKGLE 968

Query: 413 YSSQKSHIPLKESEKISK 430
              Q+         +  K
Sbjct: 969 RLDQERDAARNRERRTYK 986


>gi|82751161|ref|YP_416902.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122]
 gi|82656692|emb|CAI81119.1| probable ATP-dependent RNA helicase [Staphylococcus aureus RF122]
          Length = 448

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 131/450 (29%), Positives = 221/450 (49%), Gaps = 15/450 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ + IP +L++ ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKKTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNKKLER 121
           ++     ++ P+ +++ PTRELA Q+ D      +        + IGG   E   ++   
Sbjct: 66  IDS---EIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRCNA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L ++    LVIDEAD M+D+G I  +  I + +       
Sbjct: 123 QPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNANIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +LQ     +L +P+ + V++     + IE   + T      +  L       
Sbjct: 183 VFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPTKGAAKVEKTLNL---ID 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+FCN + N  +L  SL + G  V  IHG +  R R + +   +   +Q ++A
Sbjct: 240 ILNPYLCIVFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEVQYVIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  IE
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 362 K--LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-----KKNYS 414
               +   VD  +G+L  +    ++    + +    N    +  +    +     KK + 
Sbjct: 360 DRGFVFNTVDIKDGELKEVKAHNQRQARMRKDDHLTNQVKNKVRSKIKNKVKPGYKKKFK 419

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLG 444
            +   +  +E ++ SK QQ+ Q+   +  G
Sbjct: 420 QEVEKMKRQERKQFSK-QQNRQKRKQNKKG 448


>gi|268679106|ref|YP_003303537.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617137|gb|ACZ11502.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 407

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 130/376 (34%), Positives = 202/376 (53%), Gaps = 13/376 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+   LS  +  AV   G+  PTPIQ   IPLVL+  D+   A TG+GKTASFVLP+L
Sbjct: 1   MPFSH--LSSPLQKAVHALGFTHPTPIQQSVIPLVLEHKDIVAKAHTGSGKTASFVLPIL 58

Query: 61  TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG--IPFEAQNK 117
                     +   R L+L PTREL  QVA+ F       ++   ++          Q  
Sbjct: 59  ENWSAQTHEGKARIRVLVLTPTRELCVQVAEAFVALSSFLHVKPKVVSVIGGEKIGEQLL 118

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           ++++G D+++ T GR+LD  N+ ++ ++ +   V+DEAD+MLD+GF   +  I   +P  
Sbjct: 119 EIQKGCDIVVATSGRLLDILNKKQMDLSRVSFFVLDEADKMLDLGFEQELGLILESLPQK 178

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT  +++Q+++         +   +  + A T++           +  A L +
Sbjct: 179 RQNLLFSATYPEKMQRIASRITPCAIEV---SIEAEAPTLQRITQRVIEVNKENRAPLLR 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  ++     ++F   K+   N+     K  F   + HG++ Q  R   L +FKE  I+
Sbjct: 236 ELLRENDWDLVLVFMANKRAADNIAVKFRKHSFLAESFHGDLAQEDRTWTLQSFKERKIR 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ A+D+A+RGLDI DV  V NFD+P  +E+YIHRIGRTGRAG+ G A +L+  ED  H 
Sbjct: 296 VLFATDIASRGLDIDDVSCVINFDLPRSSEDYIHRIGRTGRAGKEGLAISLIDHEDKAHF 355

Query: 358 DAIE-----KLIEKKV 368
             IE     KL ++++
Sbjct: 356 ALIEKRCALKLTKEQI 371


>gi|225558597|gb|EEH06881.1| ATP-dependent RNA helicase DBP4 [Ajellomyces capsulatus G186AR]
          Length = 810

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 117/458 (25%), Positives = 200/458 (43%), Gaps = 18/458 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL LS      +    +   T IQ + IP  L+  D+ G A+TG+GKT +F++P+L +
Sbjct: 51  FSDLPLSEPTADGLSACHFKSLTDIQARAIPHALKGRDILGAAKTGSGKTLAFLVPLLEL 110

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         L+L PTRELA Q+ +   K G+++  +  L+IGG   + + ++L +
Sbjct: 111 LYRKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHTFSAGLVIGGKGLQEEQERLGK 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +           N+I++LV+DEADR++DMGF   +  I   +P  RQT+
Sbjct: 171 MNILVCTPGRMLQHMDQTAAFDTNHIQLLVLDEADRIMDMGFQSTVDAIIDHLPKERQTM 230

Query: 182 LFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT T ++      +           T +S                 K   L   +  
Sbjct: 231 LFSATQTKKVSDLARLSLRDPEYVSVHETAASATPAKLQQNYIITPLPEKLDTLWSFIRS 290

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S  +         ++   V       + G  +  +HG   Q +R+ I   F       + 
Sbjct: 291 SLKSKIIVFFSSGKQVRFVYESFRHMRPGIPLLHLHGRQKQGARVDITKKFSAAKYSCLF 350

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD P V  V   D P  A+ YIHR GRT R  R+G+A   +   +      +
Sbjct: 351 ATDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFLEPSE--EAGML 408

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           ++L +KK+            P+EKI++         N +  ++  F      Y  QK+ I
Sbjct: 409 KRLEQKKI------------PIEKINVRSKKQQSIKNQL--QNMCFKDPSLKYLGQKAFI 454

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
              +S  + + ++     D     +  ++     P+ +
Sbjct: 455 SYVKSIHVQRDKEVFVVKDLPLQEYAASLGLPGAPRIK 492


>gi|329725341|gb|EGG61824.1| DEAD-box ATP-dependent RNA helicase CshB [Staphylococcus
           epidermidis VCU144]
          Length = 448

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 123/449 (27%), Positives = 211/449 (46%), Gaps = 21/449 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV +  + KPT IQ + IP +L+  ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEHFNLDENLIEAVKNLNFEKPTEIQNRIIPRILKGTNLIGQSQTGTGKSHAFLLPLIQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNKKLER 121
           +E     ++ P+ +++ PTRELA Q+        K        L IGG   E   ++   
Sbjct: 66  IES---DIQEPQAIVVAPTRELAQQLYQVAMHLVKFKKGINVKLFIGGTDLEKDKQRCSH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D  + G L  +    L+IDEAD M+D+G I  + +I + +      L
Sbjct: 123 QPQLIIGTPTRINDLAHSGYLHAHLASYLIIDEADLMIDLGLIEDVDHIAARLDDENAHL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
              +    +  +   N   +          +  +     ++      +K    L+ +   
Sbjct: 183 AVFSATIPKSLQPFLNKYLSQPEFVEVDGKAHNKENIEFYLIPTKGSAKVDKTLELIDIL 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   IIFCN ++N   L  +L K+G  +  IHG +  R R + +   +    Q ++A
Sbjct: 243 NPYLC--IIFCNSRENADELADTLNKEGIKIGMIHGGLTPRERKQQMKRIRNLDFQFVIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  IE
Sbjct: 301 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEESNITLIE 360

Query: 362 K--LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN---NPIPQKSTGFDRR------K 410
                 + VD  NG+L     P++  ++ +    + +   N +  K     +R      K
Sbjct: 361 DRGYKFENVDIKNGEL----KPIKAYNMRKSRQRKDDHLTNEVKHKVRSKSKRKVKPVYK 416

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQEND 439
           K +  +   +  +E ++ SK Q   +  +
Sbjct: 417 KKFKQEVEKMKRQERKQYSKKQNRQKRKN 445


>gi|327292871|ref|XP_003231133.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Trichophyton
           rubrum CBS 118892]
 gi|326466763|gb|EGD92216.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Trichophyton
           rubrum CBS 118892]
          Length = 1180

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 128/438 (29%), Positives = 211/438 (48%), Gaps = 18/438 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL  + +  +   GY +PT IQ + +P ++   DV G+A+TG+GKT +F+LPM  
Sbjct: 548 KWSQCGLGVQTLDVIRKLGYERPTSIQSQAVPAIMSGRDVIGVAKTGSGKTIAFLLPMFR 607

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R    +  P ++I+ PTRELA Q+      + K  NL      GG P + Q  +L
Sbjct: 608 HIRDQRPLENMEGPISVIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAEL 667

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   +  
Sbjct: 668 KRGAEIIVCTPGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRP 727

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT    ++ ++   L  P  I V   S  A  I                L  
Sbjct: 728 NRQTVLFSATFPRNMEALARKTLSKPIEIIVGGRSVVAPEITQIVEVRNDDAKFVRLLEL 787

Query: 237 ---QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                   ++     ++F ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 788 LGNLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKA 847

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 848 GIFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 907

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            ++   I K +++    +   +  + N  L+K+         K        +GF  +   
Sbjct: 908 ERYSVDISKALKQSGQPVPEPIQKMVNAFLDKV---------KEGKEKASGSGFGGKGLE 958

Query: 413 YSSQKSHIPLKESEKISK 430
              Q+         K  K
Sbjct: 959 RLDQERDATRNRERKTYK 976


>gi|209518020|ref|ZP_03266851.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209501524|gb|EEA01549.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 532

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 144/404 (35%), Positives = 216/404 (53%), Gaps = 26/404 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLS  VV A+  AGY  PTP+Q + +P  +   D+   + TG+GKTA+F+LP + 
Sbjct: 37  TFASLGLSADVVSALTAAGYEHPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96

Query: 62  ILEK---------------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN 100
              +                         V  P  L+L PTRELA QV      YGK+  
Sbjct: 97  RFAQLQKAQASQPREPRPADGGRGRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLK 156

Query: 101 L-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159
                 ++GG+ +  Q   L +  ++L+ TPGR++DH  RG++ ++ ++ILV+DEADRML
Sbjct: 157 RLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRML 216

Query: 160 DMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
           DMGFI  I  I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+         I  
Sbjct: 217 DMGFIDDIDTIVAETPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRTNIAQ 276

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                  +  K    L   L     +   I+F   K +   L   L   GF   A+HG++
Sbjct: 277 TVHYVDDRDHKDR--LLDHLLRDAGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDL 334

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTGRA
Sbjct: 335 PQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRA 394

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381
           GR G A +LV   +   +  IE+ +     V+ + G      PP
Sbjct: 395 GRSGVAVSLVHHAEQGALKRIERFVRTPLPVNVVEGFEPRKAPP 438


>gi|195125432|ref|XP_002007182.1| GI12524 [Drosophila mojavensis]
 gi|193918791|gb|EDW17658.1| GI12524 [Drosophila mojavensis]
          Length = 602

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 127/382 (33%), Positives = 204/382 (53%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +       +  +    Y++PTPIQ +  P+VL  +++ GIA+TG+GKT +F+LP + 
Sbjct: 110 SFDETCFPDYCMNEIRRQRYIEPTPIQAQAWPIVLSGNNLVGIAKTGSGKTLAFILPAIV 169

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       R   P  L++ PTRELA Q+      +G +  +    + GG P   Q   L
Sbjct: 170 HINGQPTLKRGDGPIALVVAPTRELAQQIQTVANDFGSSSYVRNTCIFGGAPRSKQASDL 229

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G +++I TPGR+LD    G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 230 QNGVEIVIATPGRLLDFLQSGTTNLRRCTYLVLDEADRMLDMGFEPQIRKILSQIRPDRQ 289

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--- 236
            L++SAT   E+++++E+FL N  +I + +   +A      +V   A++ K   L     
Sbjct: 290 ILMWSATWPKEVRQLAEDFLGNYIQINIGSLELSANHNIRQYVDVCAEHEKGSKLKDLLS 349

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +          IIF   KK V  L   +   G  V +IHG+  Q  R  +L++F+ G  
Sbjct: 350 HIYDQSGMPGKIIIFVATKKKVDELARFINAFGVGVGSIHGDKSQMDRDNVLNDFRSGRA 409

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR    G ++    +++ K 
Sbjct: 410 NILVATDVAARGLDVDGIKYVINFDFPQSSEDYIHRIGRTGRKHSTGTSYAFFTRKNAKC 469

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
             A+ +++ +    +N +L  +
Sbjct: 470 ARALIEILREANQNINPELEHI 491


>gi|172062287|ref|YP_001809938.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171994804|gb|ACB65722.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 465

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 150/422 (35%), Positives = 221/422 (52%), Gaps = 24/422 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GYV  TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 9   FSALPLTPAALANLTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + ++L PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 69  LDT---RRFDVQAMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  + P TRQTL
Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ F     R                    Y     +       L +
Sbjct: 186 LFSATYPDGIAKLSQQF----LRNPKEVKLEERHDNSKIRQRFYEVAETERLHAVGQLLN 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 242 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 361

Query: 362 KLIEKKVDWLN-GDLS-----SLNPPLEKIDIAQHNHARKNNPIP-------QKSTGFDR 408
           + ++++V+W    +L      +L PP+E + I      RK+   P           GFD 
Sbjct: 362 QALKREVEWHPLAELKPAGNDTLLPPMETLQIL---GGRKDKIRPGDVLGALTGDAGFDG 418

Query: 409 RK 410
           ++
Sbjct: 419 KQ 420


>gi|27468163|ref|NP_764800.1| ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228]
 gi|57867091|ref|YP_188700.1| DEAD-box ATP dependent DNA helicase [Staphylococcus epidermidis
           RP62A]
 gi|251810975|ref|ZP_04825448.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876016|ref|ZP_06284883.1| DEAD/DEAH box helicase [Staphylococcus epidermidis SK135]
 gi|293366481|ref|ZP_06613158.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|27315709|gb|AAO04844.1|AE016748_78 ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228]
 gi|57637749|gb|AAW54537.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           epidermidis RP62A]
 gi|251805485|gb|EES58142.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295041|gb|EFA87568.1| DEAD/DEAH box helicase [Staphylococcus epidermidis SK135]
 gi|291319250|gb|EFE59619.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329735213|gb|EGG71505.1| DEAD-box ATP-dependent RNA helicase CshB [Staphylococcus
           epidermidis VCU045]
 gi|329737135|gb|EGG73389.1| DEAD-box ATP-dependent RNA helicase CshB [Staphylococcus
           epidermidis VCU028]
          Length = 448

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 123/449 (27%), Positives = 211/449 (46%), Gaps = 21/449 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV +  + KPT IQ + IP +L+  ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEHFNLDENLIEAVKNLNFEKPTEIQNRIIPRILKGTNLIGQSQTGTGKSHAFLLPLIQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNKKLER 121
           +E     ++ P+ +++ PTRELA Q+        K        L IGG   E   ++   
Sbjct: 66  IES---DIQEPQAIVVAPTRELAQQLYQVAMHLVKFKKGINVKLFIGGTDLEKDKQRCSH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D  + G L  +    L+IDEAD M+D+G I  + +I + +      L
Sbjct: 123 QPQLIIGTPTRINDLAHSGYLHAHLASYLIIDEADLMIDLGLIEDVDHIAARLDDENAHL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
              +    +  +   N   +          +  +     ++      +K    L+ +   
Sbjct: 183 AVFSATIPKSLQPFLNKYLSQPEFVEVDGKAHNKENIEFYLIPTKGSAKVDKTLELIDIL 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   IIFCN ++N   L  +L K+G  +  IHG +  R R + +   +    Q ++A
Sbjct: 243 NPYLC--IIFCNSRENADELADTLNKEGIKIGMIHGGLTPRERKQQMKRIRNLDFQFVIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  IE
Sbjct: 301 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEESNITLIE 360

Query: 362 K--LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN---NPIPQKSTGFDRR------K 410
                 + VD  NG+L     P++  ++ +    + +   N +  K     +R      K
Sbjct: 361 DRGYKFENVDIKNGEL----KPIKAYNMRKSRQRKDDHLTNEVKHKVRSKSKRKVKPGYK 416

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQEND 439
           K +  +   +  +E ++ SK Q   +  +
Sbjct: 417 KKFKQEVEKMKRQERKQYSKKQNRQKRKN 445


>gi|115359843|ref|YP_776981.1| ATP-dependent RNA helicase DbpA [Burkholderia ambifaria AMMD]
 gi|115285131|gb|ABI90647.1| ATP-dependent RNA helicase DbpA [Burkholderia ambifaria AMMD]
          Length = 465

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 150/422 (35%), Positives = 221/422 (52%), Gaps = 24/422 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GYV  TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 9   FSALPLTPAALANLTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + ++L PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 69  LDT---RRFDVQAMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  + P TRQTL
Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ F     R                    Y     +       L +
Sbjct: 186 LFSATYPDGIAKLSQQF----LRNPKEVKLEERHDNSKIRQRFYEVAETERLHAVGQLLN 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 242 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 361

Query: 362 KLIEKKVDWLN-GDLS-----SLNPPLEKIDIAQHNHARKNNPIP-------QKSTGFDR 408
           + ++++V+W    +L      +L PP+E + I      RK+   P           GFD 
Sbjct: 362 QALKREVEWHPLAELKPAGNDTLLPPMETLQIL---GGRKDKIRPGDVLGALTGDAGFDG 418

Query: 409 RK 410
           ++
Sbjct: 419 KQ 420


>gi|261758239|ref|ZP_06001948.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|261738223|gb|EEY26219.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
          Length = 462

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 151/421 (35%), Positives = 232/421 (55%), Gaps = 8/421 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 16  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 76  IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 135

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 136 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 195

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 196 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEI---TQVVHPVPTKEKRRLLSAML 252

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 253 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 312

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P   HV N+D P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 313 ATDIAARGIDVPGSSHVVNYDPPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 372

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E++   K+   +  +     P+ K    Q    R      +K+     R+    + + H
Sbjct: 373 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--GQRTEQAESRKAPAHKHRRPAQKAGEQH 430

Query: 420 I 420
            
Sbjct: 431 R 431


>gi|260168758|ref|ZP_05755569.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           F5/99]
          Length = 535

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 151/421 (35%), Positives = 232/421 (55%), Gaps = 8/421 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEI---TQVVHPVPTKEKRRLLSAML 325

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 326 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P   HV N+D P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 386 ATDIAARGIDVPGSSHVVNYDPPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 445

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E++   K+   +  +     P+ K    Q    R      +K+     R+    + + H
Sbjct: 446 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--GQRTEQAESRKAPAHKHRRPAQKAGEQH 503

Query: 420 I 420
            
Sbjct: 504 R 504


>gi|225627526|ref|ZP_03785563.1| DEAD-box ATP dependent DNA helicase [Brucella ceti str. Cudo]
 gi|225617531|gb|EEH14576.1| DEAD-box ATP dependent DNA helicase [Brucella ceti str. Cudo]
          Length = 549

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 151/421 (35%), Positives = 232/421 (55%), Gaps = 8/421 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 103 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 162

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 163 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 222

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 223 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 282

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 283 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEI---TQVVHPVPTKEKRRLLSAML 339

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 340 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 399

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P   HV N+D P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 400 ATDIAARGIDVPGSSHVVNYDPPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 459

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E++   K+   +  +     P+ K    Q    R      +K+     R+    + + H
Sbjct: 460 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--GQRTEQAESRKAPAHKHRRPAQKAGEQH 517

Query: 420 I 420
            
Sbjct: 518 R 518


>gi|332020434|gb|EGI60854.1| Putative ATP-dependent RNA helicase DDX52 [Acromyrmex echinatior]
          Length = 558

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 102/434 (23%), Positives = 198/434 (45%), Gaps = 15/434 (3%)

Query: 1   MDFADLGL----SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFV 56
           ++F +L +    S  ++  + ++GY+ PTPIQ++ IP++L+   +   A TG+GKTA+F+
Sbjct: 128 LEFNELKINYQVSENLLNNMKNSGYLYPTPIQMQAIPIMLEGRQILACAPTGSGKTAAFL 187

Query: 57  LPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI---PFE 113
           LP++  L + + +      +IL PTRELA Q      K     +  + ++          
Sbjct: 188 LPIIHSLREPQKKGFR--AVILNPTRELAKQTYRECLKLSDGCDFRIHIISKVNQALTKY 245

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN---- 169
             +   +    +        L + +   + +NN+E L++DEAD++ + G   + +     
Sbjct: 246 GPSSSQKFDILITTPKRLVFLLNQDPPAISLNNVEWLIVDEADKLFEEGIRGFREQLEEI 305

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
             + V    +  +FSAT T  + K     ++    + V   ++ A+ ++   +   ++  
Sbjct: 306 TKACVSTNLRCSMFSATNTPAVSKWCRRNMKGLITVTVGQRNAAADLVDQKLLFVGSERG 365

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K      + +  +      ++F   K+    L + L   G +V  IH +     R   + 
Sbjct: 366 KLVEF--RNIIQKGISPPVLVFVQSKERAQELFNELIYDGINVDVIHADRTMTQRDNTVR 423

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+EG I +++ ++L  RG+D   V  V N+D P  A +YIHRIGRTGRAG  GKA T  
Sbjct: 424 CFREGKIWVLICTELMGRGIDFKGVNLVINYDFPPSAISYIHRIGRTGRAGHKGKAVTFF 483

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            ++D  ++ +I  ++      +   + ++    +K        A     I    T    +
Sbjct: 484 TQQDTVNLRSIAAVLRASGCDVPDYMLAMKKHSKKERRKLERTAPTREKILTVPTYKRHK 543

Query: 410 KKNYSSQKSHIPLK 423
           +K+   +KS +  +
Sbjct: 544 RKSCIEKKSELEKE 557


>gi|265994970|ref|ZP_06107527.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|262766083|gb|EEZ11872.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
          Length = 455

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 151/421 (35%), Positives = 234/421 (55%), Gaps = 8/421 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 9   FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 68

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 69  IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 129 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 189 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEI---TQVVHPVPTKEKRRLLSAML 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 246 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 306 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 365

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E++   K+   +  +     P+ K    Q    R      +K+     R+    + + H
Sbjct: 366 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--SQRTEQAESRKAPAHKHRRPAQKAGEQH 423

Query: 420 I 420
            
Sbjct: 424 R 424


>gi|256113603|ref|ZP_05454423.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
          Length = 535

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 151/421 (35%), Positives = 234/421 (55%), Gaps = 8/421 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEI---TQVVHPVPTKEKRRLLSAML 325

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 326 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 445

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E++   K+   +  +     P+ K    Q    R      +K+     R+    + + H
Sbjct: 446 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--SQRTEQAESRKAPAHKHRRPAQKAGEQH 503

Query: 420 I 420
            
Sbjct: 504 R 504


>gi|194857377|ref|XP_001968940.1| GG25145 [Drosophila erecta]
 gi|190660807|gb|EDV57999.1| GG25145 [Drosophila erecta]
          Length = 512

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 121/382 (31%), Positives = 202/382 (52%), Gaps = 9/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    L   +   V  +GY  PTPIQ  +IP+++   D+   AQTG+GKTA+F++P+L+
Sbjct: 94  NFEHAQLRDIIRENVTKSGYKVPTPIQKVSIPVIVAGRDLMACAQTGSGKTAAFLVPILS 153

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +     +  P+ +I+ PTRELA Q+     K+     L + ++ GG  F+ QN+ +
Sbjct: 154 KLLDDPQDLEIGKPQAVIVSPTRELAIQIFSEARKFAFESYLKINIVYGGTSFKHQNECI 213

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  VLI TPGR+LD  +R  +   +   +V+DEADRMLDMGF   ++   +      +
Sbjct: 214 TKGCHVLIATPGRLLDFVDRAFITFEDTRFVVLDEADRMLDMGFSESMRKFMTHPTMRPE 273

Query: 180 TL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
               +FSAT  +E+Q+++  FL N   + +                T  + +K     + 
Sbjct: 274 HQTLMFSATFPEEIQRLAGEFLNNYVFVTIGVVGGACSD----VQQTIYEVNKFAKRSKL 329

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +   ++     I+F   K+    L   L +  F   +IHG+  Q  R + L +FK G+++
Sbjct: 330 MEILREQADGTIVFVETKRGADFLASFLSETEFPTTSIHGDRLQSQREQALRDFKNGSMK 389

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKH 356
           +++A+ +AARGLDI ++ HV NFD+PN  ++Y+HRIGRTGR G +G+A +    + D   
Sbjct: 390 VIIATSVAARGLDIKNINHVVNFDMPNNIDDYVHRIGRTGRVGNNGRATSFFDPDHDQAL 449

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
              + K++E     +   L  L
Sbjct: 450 AGDLIKILEGSGQTVPEFLRDL 471


>gi|149276646|ref|ZP_01882789.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
 gi|149232315|gb|EDM37691.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
          Length = 376

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 128/376 (34%), Positives = 217/376 (57%), Gaps = 5/376 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL+P ++ A+ D  + +PT IQ   IP +L + DV GIA+TG+GKTA +VLP+L
Sbjct: 1   MPFSSLGLTPALLIALADQQFNEPTAIQQTVIPAILAKKDVLGIAKTGSGKTAGYVLPVL 60

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
           T L++    + R    L+L PTRELA QV + F+ +  +       L + G         
Sbjct: 61  TNLQQSLGPKNRHANVLVLVPTRELAEQVKEVFKTFSTSLPEAVKTLAVYGGVSINTQMM 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +G +VL+ TPGR+L+      + ++++E L++DEAD+ML++GF   +  I +L+P  R
Sbjct: 121 ALQGVNVLVGTPGRLLELVAANSVNLSSVETLILDEADKMLNLGFKEEVNKIIALLPAKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT++ +++ + +  L +P  +++     + E I       Y     K     + 
Sbjct: 181 QNVLFSATLSKDIEHIHQLLLHDPVVVKIEEGEDSLELI---TQTAYIVSEDKKGPFLRS 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +  MK  ++F +    V  + + L+K      A H    Q +R   L++FK G I++
Sbjct: 238 LIKKHRMKQVLVFASSIHQVEAIVNKLQKNKIDAKAFHSKKSQGNRTDSLAHFKFGRIKV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DL ARG+DI  + +V N+++P   ++Y+HRIGRTGRAG  G+A +LV+  ++ H +
Sbjct: 298 LVATDLMARGIDIDGLPYVINYELPRSPKDYVHRIGRTGRAGNTGEAISLVSHNELHHFE 357

Query: 359 AIEKLIEKKVDWLNGD 374
            I+K + K+V  ++ +
Sbjct: 358 VIQKKMGKQVPLIDSE 373


>gi|56412534|ref|YP_149609.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361469|ref|YP_002141105.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56126791|gb|AAV76297.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197092945|emb|CAR58375.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 444

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 138/388 (35%), Positives = 211/388 (54%), Gaps = 6/388 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP + 
Sbjct: 5   TFSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT   D ++  +E  L++P  +  N  +   + I   +        K      + L
Sbjct: 185 MLFSATLEGDAIKDFAERLLEDPVEVSANPSTRERKKIHQWYYRADNFEHKVAL--LKHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             QD     I+F  +++ V  L  +L   G + C + G + Q  R + +    +G + ++
Sbjct: 243 LKQDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIPDV HV NFD+P   + Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLLLK 362

Query: 360 IEKLIEKKVDWLNGDL--SSLNPPLEKI 385
           I + IE+ +     D    +   P EK+
Sbjct: 363 IGRYIEEPLKARVIDELRPTTRAPSEKL 390


>gi|16765963|ref|NP_461578.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62181218|ref|YP_217635.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161612638|ref|YP_001586603.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167553669|ref|ZP_02347416.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167994856|ref|ZP_02575946.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232171|ref|ZP_02657229.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168238338|ref|ZP_02663396.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168245094|ref|ZP_02670026.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261356|ref|ZP_02683329.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168468057|ref|ZP_02701894.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168823169|ref|ZP_02835169.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194444674|ref|YP_002041910.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194451369|ref|YP_002046652.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194469312|ref|ZP_03075296.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736243|ref|YP_002115655.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197251182|ref|YP_002147547.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197263960|ref|ZP_03164034.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198245924|ref|YP_002216658.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200389167|ref|ZP_03215779.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204929439|ref|ZP_03220513.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205353686|ref|YP_002227487.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857997|ref|YP_002244648.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224584498|ref|YP_002638296.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238912708|ref|ZP_04656545.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|16421193|gb|AAL21537.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|62128851|gb|AAX66554.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161362002|gb|ABX65770.1| hypothetical protein SPAB_00333 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403337|gb|ACF63559.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194409673|gb|ACF69892.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194455676|gb|EDX44515.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711745|gb|ACF90966.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195628861|gb|EDX48275.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197214885|gb|ACH52282.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197242215|gb|EDY24835.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197288867|gb|EDY28240.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197940440|gb|ACH77773.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199606265|gb|EDZ04810.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321158|gb|EDZ06358.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205273467|emb|CAR38444.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205321947|gb|EDZ09786.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327350|gb|EDZ14114.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333649|gb|EDZ20413.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336132|gb|EDZ22896.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205340544|gb|EDZ27308.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349536|gb|EDZ36167.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709800|emb|CAR34152.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224469025|gb|ACN46855.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261247841|emb|CBG25670.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267994784|gb|ACY89669.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159194|emb|CBW18709.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913637|dbj|BAJ37611.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320085536|emb|CBY95315.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225998|gb|EFX51051.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322613360|gb|EFY10302.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620436|gb|EFY17301.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625096|gb|EFY21925.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629460|gb|EFY26236.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633847|gb|EFY30586.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635453|gb|EFY32164.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639871|gb|EFY36550.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644243|gb|EFY40787.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649935|gb|EFY46355.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654882|gb|EFY51199.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658190|gb|EFY54456.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322661738|gb|EFY57956.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669719|gb|EFY65865.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673274|gb|EFY69379.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322674937|gb|EFY71024.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682960|gb|EFY78978.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685621|gb|EFY81616.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322715706|gb|EFZ07277.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323130981|gb|ADX18411.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323191951|gb|EFZ77189.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200416|gb|EFZ85497.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201315|gb|EFZ86382.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208386|gb|EFZ93326.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211538|gb|EFZ96376.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215970|gb|EGA00702.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221751|gb|EGA06159.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225641|gb|EGA09868.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229359|gb|EGA13483.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235326|gb|EGA19410.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237488|gb|EGA21551.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245243|gb|EGA29244.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246468|gb|EGA30449.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323254001|gb|EGA37823.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259051|gb|EGA42699.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261974|gb|EGA45539.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267757|gb|EGA51238.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269684|gb|EGA53136.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624414|gb|EGE30759.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326628791|gb|EGE35134.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332989572|gb|AEF08555.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 444

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 138/388 (35%), Positives = 211/388 (54%), Gaps = 6/388 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP + 
Sbjct: 5   TFSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT   D ++  +E  L++P  +  N  +   + I   +        K      + L
Sbjct: 185 MLFSATLEGDAIKDFAERLLEDPVEVSANPSTRERKKIHQWYYRADNFEHKVAL--LKHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             QD     I+F  +++ V  L  +L   G + C + G + Q  R + +    +G + ++
Sbjct: 243 LKQDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIPDV HV NFD+P   + Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLLLK 362

Query: 360 IEKLIEKKVDWLNGDL--SSLNPPLEKI 385
           I + IE+ +     D    +   P EK+
Sbjct: 363 IGRYIEEPLKARVIDELRPTTRAPSEKL 390


>gi|16761502|ref|NP_457119.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29140801|ref|NP_804143.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213420579|ref|ZP_03353645.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213425267|ref|ZP_03358017.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213585704|ref|ZP_03367530.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213616277|ref|ZP_03372103.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213646345|ref|ZP_03376398.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213854910|ref|ZP_03383150.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|25385254|pir||AD0830 ATP-dependent RNA helicase SrmB [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503802|emb|CAD02792.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29136426|gb|AAO67992.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 444

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 138/388 (35%), Positives = 211/388 (54%), Gaps = 6/388 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP + 
Sbjct: 5   TFSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT   D ++  +E  L++P  +  N  +   + I   +        K      + L
Sbjct: 185 MLFSATLEGDAIKDFAERLLEDPVEVSANPSTRERKKIHQWYYRADNFEHKVAL--LKHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             QD     I+F  +++ V  L  +L   G + C + G + Q  R + +    +G + ++
Sbjct: 243 LKQDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIPDV HV NFD+P   + Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLLLK 362

Query: 360 IEKLIEKKVDWLNGDL--SSLNPPLEKI 385
           I + IE+ +     D    +   P EK+
Sbjct: 363 IGRYIEEPLKARVIDELRPTTRAPSEKL 390


>gi|298711460|emb|CBJ32599.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 848

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 131/399 (32%), Positives = 205/399 (51%), Gaps = 7/399 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG++  +  A    G+   T IQ + +PL  +  DV G+A+TG+GKT +F LP+L 
Sbjct: 407 SFESLGVTGPLCEAAAQLGWTHATEIQRQALPLAFEGKDVIGLAETGSGKTGAFALPILQ 466

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+      I+ PTRELA Q+ +  E  G    L    ++GGI    Q+  L  
Sbjct: 467 ALLENPQRLFAV---IMAPTRELAFQINEVMEALGVGIGLKTVCIVGGIDMFQQSVALAL 523

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V+I TPGR++DH    K       + LV+DEADRML M F   I  + S++P  R+T
Sbjct: 524 KPHVVIATPGRLVDHLENTKGFSLRTAKYLVLDEADRMLGMDFEEEINKVLSVLPRERRT 583

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++ K+    L+NP R+     ++   T +          +K        + 
Sbjct: 584 FLFSATMTSKVAKLQRASLKNPARV---EVANKFSTPKTLVQQYLFIPAKHKDCYLAYVL 640

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ I+F +   N   +   L   GF    +HG + Q  R+  L  FK G   +++
Sbjct: 641 NEFAGQSTIVFVSTCNNAQRVALLLRNLGFQAVCLHGQMGQPKRLGALGKFKSGQRNVLI 700

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V N ++P+  ++YIHR+GRT RAGR G++   V + D++    +
Sbjct: 701 ATDVASRGLDIPSVDLVVNMEIPSHGKDYIHRVGRTARAGRAGRSIAFVTQYDVEVYQRM 760

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           E LI +K+     D  ++    E++  AQ   AR+    
Sbjct: 761 EALIGQKLPPYVCDEETVLVLQERVGEAQRMAAREMREA 799


>gi|316973448|gb|EFV57036.1| ATP-dependent RNA helicase DBP8 [Trichinella spiralis]
          Length = 563

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 134/443 (30%), Positives = 231/443 (52%), Gaps = 13/443 (2%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           DLGLS  +V      G V+P+P+Q+  IP +L   D  G ++TGTGKT +F +P++  L 
Sbjct: 109 DLGLSSWLVEQCAVMGIVEPSPVQLNCIPEILIGKDAIGCSKTGTGKTLAFAIPIIQRLS 168

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           +          L+L P+RELA Q+ + F+  GK   L  ++++GG     Q  ++     
Sbjct: 169 E---DPYGIYALVLTPSRELAFQIGEQFQVLGKPLGLRTSIVVGGRDMIEQANEIANQPH 225

Query: 125 VLICTPGRILDHF--NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           +LI TPGR+ DH      +   + I+  V+DEADR+LD  +   ++ I   +P  RQTLL
Sbjct: 226 ILIATPGRLADHILSRSDENWFHKIKFFVLDEADRLLDGQYDLQLETIIEKLPKERQTLL 285

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-ATYAQYSKKCALLQQLLQS 241
           FSAT+TD L ++ E  ++ P   +  + + T +T+E  +V    +        + +L   
Sbjct: 286 FSATITDALCRLQELSVKKPFFWQEQSCTVTVDTLEQRYVLCPKSVKDAYVTYVVKLFTD 345

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++   + +IF +       L       GF V A+H  I QR R+   + FK   +++++ 
Sbjct: 346 KNPQSSVLIFSHSCYECQALTLMFADLGFKVGALHSMISQRERLSSFNLFKSNQLKILIC 405

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLD+P V  V N ++P  A+ YIHR+GR+ RAGR G+A T + + DI  + AIE
Sbjct: 406 TDVASRGLDLPFVDLVINHNIPAVAKTYIHRVGRSARAGRSGRAVTFITQYDIALLQAIE 465

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI-PQKSTGFDRRKK------NYS 414
           K I  +++ L  +   ++  + ++ +A+     K +     +    +RRK+      +  
Sbjct: 466 KAINCQMNELKVNDKKVSNYVTEVLVAKREAILKMDEQHFGERRAINRRKEMILSGLDPE 525

Query: 415 SQKSHIPLKESEKISKLQQDIQE 437
                +  ++  K SK + D+ +
Sbjct: 526 DVDRFLERRKDRKQSKDKSDMSD 548


>gi|227363253|ref|ZP_03847385.1| ATP-dependent RNA helicase [Lactobacillus reuteri MM2-3]
 gi|325682139|ref|ZP_08161657.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           reuteri MM4-1A]
 gi|227071709|gb|EEI10000.1| ATP-dependent RNA helicase [Lactobacillus reuteri MM2-3]
 gi|324978783|gb|EGC15732.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           reuteri MM4-1A]
          Length = 467

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 121/451 (26%), Positives = 209/451 (46%), Gaps = 20/451 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  L P ++ A+    + +PTP+Q + IP+++    V G + TG+GKT +F+LP+ +
Sbjct: 15  KFADFQLQPYLLTAIQKINFRQPTPVQQRVIPVIMAGRSVVGQSATGSGKTHAFLLPIFS 74

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+   T             A    KY  +       + G       ++   +
Sbjct: 75  KIKPEDQTVQAVITTPSRELAYQIYNAAKQLNKYAPHPLTIHNYVGGTDKQHQVDQLSRK 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LD      L ++  ++ V+DEAD  LDMGF+  +  I S  P   Q +
Sbjct: 135 QPQLVIGTPGRVLDLIKSQALDIHTAKMFVVDEADMTLDMGFLHEVDQIASHFPNDLQMM 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +L+   + +++NP   E+ T +     +++  ++T  Q   +         +
Sbjct: 195 VFSATIPQKLRPFLKKYMENPVVEEIPTEAVINPDVDNWLMSTKGQDRNQLIYRLL---T 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F N K+  V L   LE QG  V  IHG ++ R R + +   ++   Q +VA
Sbjct: 252 LGEPYLALVFANTKERAVKLTQYLENQGLKVAMIHGGLEARRRKRTMRQIRDLEYQYVVA 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+DI  V  V N D+P   E ++HR+GRTGR G  G A TL    +    D I 
Sbjct: 312 TDLAARGIDIDGVSLVINDDLPTDLEYFVHRVGRTGRNGMKGTAITLYEPAED---DLIA 368

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR------------- 408
           KL E+ V ++  +L +           + ++ R+ N +     G+ +             
Sbjct: 369 KLEERGVKFVPKELKNGQLVTTHDRNRRKHYKRRQNELDPSMKGYVKKTKKKVKPGYKKR 428

Query: 409 -RKKNYSSQKSHIPLKESEKISKLQQDIQEN 438
            +K     ++    L+   KI K ++  Q+ 
Sbjct: 429 IKKAIKEDEQQKRKLELRHKIRKAKRARQKQ 459


>gi|310801624|gb|EFQ36517.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 480

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 129/407 (31%), Positives = 209/407 (51%), Gaps = 7/407 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG++  +  A  + GY KPTPIQ ++IP  L   D+ G+A+TG+GKTA+F LP++ 
Sbjct: 53  SFKDLGVADSLCDACANLGYTKPTPIQAQSIPHALANRDIIGLAETGSGKTAAFALPVIQ 112

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            L     + +    L+L PTRELAAQ+   FE  G   +L  A+++GG+   AQ     +
Sbjct: 113 AL---LEKPQAFFGLVLAPTRELAAQIGQQFEALGSLISLRTAVIVGGLDMVAQAIALGK 169

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      +          + +++ LV+DEADR+LDM F P I  I   +P  R+T
Sbjct: 170 KPHVIVATPGRLVDHLEKTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKILKFIPRERRT 229

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L++P R+ +++      +    +        K        L 
Sbjct: 230 FLFSATMSSKIESLQRASLRDPVRVSISSNKYQTVSTLLQYYLFIPHQLK--DTYLVYLA 287

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   K  ++F         L   L   GF    +HG ++Q +R+  L+ F+ G   ++V
Sbjct: 288 NEFAGKKLVVFTRTVSETQRLAILLRTLGFGAIPLHGQLNQTARLGALNKFRAGERSILV 347

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V N D+   ++ ++HRIGRT RAG+ G A +LV + D++    I
Sbjct: 348 ATDVAARGLDIPLVDVVINHDLAQDSKTHVHRIGRTARAGKSGIALSLVTQYDLEIWLRI 407

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           E  + KK D        +     +++ AQ  HAR       ++ G  
Sbjct: 408 EAALGKKQDEYPTQKEEVMVFQSRVEEAQ-RHARMEMKNLMETKGKK 453


>gi|224137340|ref|XP_002322533.1| predicted protein [Populus trichocarpa]
 gi|222867163|gb|EEF04294.1| predicted protein [Populus trichocarpa]
          Length = 443

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 129/414 (31%), Positives = 201/414 (48%), Gaps = 14/414 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FADLGL  ++V A  + G+ KPT IQ + IP  LQ  D+ G+A TG+GKT +FVLP   
Sbjct: 11  TFADLGLCKELVEACENLGWKKPTKIQEEAIPYALQGKDLIGVAATGSGKTGAFVLPTLE 70

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK- 117
            +    + R  V+     +L PTRELA Q+A+ FE  G    +   +L+GG     Q+  
Sbjct: 71  AILKDSQERKSVQPFFVCVLSPTRELAIQIAEQFEALGSGIGVRCVVLVGGEDMLQQSIV 130

Query: 118 -KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
              +R   ++           N     ++ ++ L++DEADR+L M F   +  I   +P 
Sbjct: 131 LAKKRPHVIVGTPGRLADHLSNTKGFSLHALKYLILDEADRLLSMDFEKSLDEILKAIPR 190

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R+T LFSATMT++  K+    L+NP +I     +     ++      Y   +       
Sbjct: 191 NRRTYLFSATMTNKAGKLQRACLRNPVKI---EAAFKYSIVDTLEQGFYFMPAALKDCYL 247

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             + S       ++F    +    L   L K G     I+G + Q +R+  L+ FK G  
Sbjct: 248 VHVLSSKKGATSMVFTRTCRETDFLALVLRKLGLGAIPINGQMSQSNRLGALNKFKAGEF 307

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++ +D+A+RGLDI  V  V N+++P  A++Y HR+GRT RAGR G A +LV + DI  
Sbjct: 308 NILICTDVASRGLDILSVDVVVNYNIPTNAKDYFHRVGRTARAGRSGLAISLVNQFDIGP 367

Query: 357 IDAIEKLIEK--KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
              IEK I    K+     +   +    E++  A+    R +    Q+  G  R
Sbjct: 368 FKQIEKHIGDDFKIPKYTANEDEVLLLAERVTEAK----RISRKSIQEGGGNKR 417


>gi|160331647|ref|XP_001712530.1| rrp3 [Hemiselmis andersenii]
 gi|159765979|gb|ABW98205.1| rrp3 [Hemiselmis andersenii]
          Length = 398

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 131/391 (33%), Positives = 221/391 (56%), Gaps = 7/391 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+S ++        +  PT IQ K IP  L   D+ G AQTG+GKT +++LP++ 
Sbjct: 3   SFDKLGISKELCRICKANNFFIPTKIQAKVIPHALNGRDIIGYAQTGSGKTIAYLLPIIQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L K   +     ++IL P+RELA Q+A  FE +G  + + + +L+GG+   +Q   L  
Sbjct: 63  NLVK---KKTAFFSIILVPSRELAFQIASYFEAFGNIFGIKIVVLVGGLENFSQKALLSL 119

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +LICTPGR+++H  +  K  +  +EILVIDEADR+  + F      I S +P  +Q+
Sbjct: 120 NPHILICTPGRLIEHLEKFLKNKIKKLEILVIDEADRLFQLDFKKEFSIIFSELPKNKQS 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM+  L+ + +N ++NP +I++N      +T++  ++       K        L 
Sbjct: 180 LFFSATMSLNLENLQKNNMKNPVKIQINRKYKVVKTLQQNYIFIPQ---KLKDCYFIYLC 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + ++F + +K         +  GF+   +HG ++Q  R++IL  F+ G I++++
Sbjct: 237 NEFNGSSILVFVDTQKCAEKKTLLAKFLGFNAEYLHGGMNQNKRLEILQKFRFGKIKILI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLDIP+V  V N+D+P+ A+ Y+HR+GRT RAG+ G+   +V + DI     I
Sbjct: 297 ATDLASRGLDIPNVDLVLNYDLPHLAKEYLHRVGRTARAGKSGRTINIVTQYDIHLCQKI 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
           E L+++K   LN  L+ +    + +D  +  
Sbjct: 357 ETLVQQKFILLNFKLAHVLILEQTVDKMKQK 387


>gi|325119679|emb|CBZ55232.1| putative DEAD/DEAH box helicase [Neospora caninum Liverpool]
          Length = 694

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 128/404 (31%), Positives = 197/404 (48%), Gaps = 24/404 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
            F + G    +   +    + +PT IQ    P  L   D+ GIAQTG+GKT  F+LP  +
Sbjct: 283 SFEEAGFPAPIQNQLKKMNFAEPTAIQKIGWPTALSGRDMIGIAQTGSGKTLGFLLPGLV 342

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-----------------NLT 102
               +   A  + P  L+L PTRELA Q+     ++ +                      
Sbjct: 343 HASAQPPLAPGQGPIVLVLAPTRELAMQIRHECMRFTEGLALSSSAEDQEGGQRSGVRFR 402

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
            A + GG+P + Q  +L  GA++LI TPGR++D  + G   +  +  +V+DEADRM+DMG
Sbjct: 403 TACVYGGVPRQGQATELRNGAEILIATPGRLIDFLDLGVTNLKRVSYIVLDEADRMMDMG 462

Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           F P ++ I S V   RQTLL+SAT   E++ ++  F +          +           
Sbjct: 463 FEPQVRKIFSQVRPDRQTLLWSATWPKEVRGLASEFCRTRVVKLQVGKADLQANANVTQR 522

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                 ++    L  +LQ     +  +IFC  K+    LC  L  +     AIHG+ +QR
Sbjct: 523 VEVVSSNQLQHRLLSVLQEDIAGQKTLIFCETKRQCDQLCRELRYRQLRALAIHGDKEQR 582

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R +IL +F++G  ++++A+D+A+RGLDI DV  V N+DVP   E+YIHRIGRTGRAG  
Sbjct: 583 ERDRILHDFRKGDCEILLATDVASRGLDIHDVKFVINYDVPKNIESYIHRIGRTGRAGNK 642

Query: 343 GKAFT-----LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           G A +       + E +     I +++         +L  +  P
Sbjct: 643 GTAISFFQYDFYSPEKVTMARKICEVMRSVGQEPPPELEKIGAP 686


>gi|226288804|gb|EEH44316.1| ATP-dependent rRNA helicase RRP3 [Paracoccidioides brasiliensis
           Pb18]
          Length = 482

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 139/427 (32%), Positives = 226/427 (52%), Gaps = 12/427 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +  A    GY  PTPIQ + IPL LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 57  SFKDLGVIDSLCEACEALGYKTPTPIQTEAIPLALQGRDLIGLAETGSGKTAAFALPILQ 116

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    L+L PTRELA Q+++ FE  G   ++  A+++GG+    Q   L +
Sbjct: 117 AL---MDKPQSLFGLVLAPTRELAYQISEAFEALGSLISVRCAVIVGGMDMVPQAIALGK 173

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +    N     + N++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 174 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRT 233

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L NP R+ +++  S  +T+            K   +    L 
Sbjct: 234 YLFSATMSSKVESLQRASLSNPLRVSISS--SKYQTVSTLLQTFLFIPHKYKDIYLVYLL 291

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ IIF         L   L   GF    +HG + Q  R+  L  F+  +  ++V
Sbjct: 292 NEFAGQSAIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSYRLGALGKFRSRSRDILV 351

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V NFD+P  ++ YIHR+GRT RAG+ G AF+ V + D++    I
Sbjct: 352 ATDVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFSFVTQYDLEVWLRI 411

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  ++KK++    +   +    +++  AQ +       I +     + R    ++ +   
Sbjct: 412 ENALDKKLEEYKVEKEEVMVLSDRVGEAQRHA------ITEMKNLHENRGTKGATLRGRR 465

Query: 421 PLKESEK 427
           P K S++
Sbjct: 466 PAKASKR 472


>gi|50289845|ref|XP_447354.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74690916|sp|Q6FQZ0|DBP8_CANGA RecName: Full=ATP-dependent RNA helicase DBP8
 gi|49526664|emb|CAG60291.1| unnamed protein product [Candida glabrata]
          Length = 437

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 124/431 (28%), Positives = 196/431 (45%), Gaps = 23/431 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LGLS  +V ++       PT IQ   IP +L+  D  G A+TG+GKT +F  PMLT
Sbjct: 10  NFRQLGLSKWLVESLDAMRIRTPTAIQSGCIPEILKGRDCIGGAKTGSGKTIAFAGPMLT 69

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +    +      +L PTRELA Q+A+ F   G   N+ VAL++GG     Q  +L+R
Sbjct: 70  QWSEDPTGMFGI---VLTPTRELAMQIAEQFTALGSYMNIRVALVVGGESIVDQALQLQR 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV------P 175
               +I TPGR+  H              V        D+       N            
Sbjct: 127 KPHFIIATPGRLAHHILNSGDDTVGGLKRVKYLVLDEADILLTETFSNDLKTCVGALPPK 186

Query: 176 FTRQTLLFSATMTDELQ-----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
             RQTLLF+AT+TD+++      V +           N  +    +  +       ++ K
Sbjct: 187 EKRQTLLFTATITDQVRALQDAPVQKGKQPLFCYEVENVDNVAIPSTLNTEYVLVPEHVK 246

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L Q L          IIF N+      L  +L+     V ++H  + Q+ R   +  
Sbjct: 247 EAYLYQLLTCESYANSTAIIFVNRTTAAEVLRRTLKALDVRVASLHSQMPQQERTNSMHR 306

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+    ++++A+D+A+RGLDIP V  V N+D+P+  + +IHR GRT RAGR G A + + 
Sbjct: 307 FRANAARVLIATDVASRGLDIPTVELVINYDIPSDPDTFIHRSGRTARAGRKGDAISFIT 366

Query: 351 KEDIKHIDAIEKLIEKKVDWLNG--DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           + D+  I+AIE  I  K+   +   D + +   L K+     + A++   +  +   F  
Sbjct: 367 QRDVSRIEAIEARINMKMTECDKVHDTAVIRKALTKV-----SKAKREALMAMEKENFGE 421

Query: 409 RKK--NYSSQK 417
           R+K     +QK
Sbjct: 422 RRKLQKRKTQK 432


>gi|68074371|ref|XP_679100.1| snrnp protein [Plasmodium berghei strain ANKA]
 gi|56499760|emb|CAH95922.1| snrnp protein, putative [Plasmodium berghei]
          Length = 782

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 116/401 (28%), Positives = 189/401 (47%), Gaps = 25/401 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  LS  ++ A+  A Y KPTPIQ++ IP+ L+  D+ GIA+TG+GKTA+FVLPML+
Sbjct: 359 KWEESNLSSDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLS 418

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +++            P  LI+ P+RELA Q+ +   K+    +     ++GG   EAQ 
Sbjct: 419 YVKQLPPLTYETSQDGPYALIIAPSRELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQA 478

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT----- 171
            +L RG +++I TPGR+ D   +   ++N    ++IDEADRM+DMGF   +  I      
Sbjct: 479 FELRRGVEIVIGTPGRLQDCLEKAYTVLNQCNYVIIDEADRMMDMGFEDAVHFILDNIPT 538

Query: 172 ---------------SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
                           +     +    +   +  +    E   +   R            
Sbjct: 539 SNLKSEDDALALQEEMMAKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGA 598

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
            +          ++     +     +      I+F NQKK    +  S+ K  F   A+H
Sbjct: 599 GKRSIEQKLEFITEGKKKQKLQELLEIYEPPIIVFVNQKKVADIIAKSISKMKFKAIALH 658

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G   Q  R + L+ FK G   ++VA+D+A RG+D+  V  V NFD+P    +Y HRIGRT
Sbjct: 659 GGKVQEMREEALNAFKNGEFDILVATDVAGRGIDVHGVKLVINFDLPKDIASYTHRIGRT 718

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
           GRAG  G A + V ++D      + + +    + +  +L++
Sbjct: 719 GRAGMKGLAISFVTEQDTHIFYDLRQFLISSNNIVPLELAN 759


>gi|325296847|ref|NP_001191665.1| ATP-dependent RNA helicase DDX5 [Aplysia californica]
 gi|304441889|gb|ADM34180.1| ATP-dependent RNA helicase DDX5 [Aplysia californica]
          Length = 600

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 126/381 (33%), Positives = 202/381 (53%), Gaps = 3/381 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +      V+  +    +  PT IQ +  P+ L   ++ GIAQTG+GKT  F+LP + 
Sbjct: 106 TFEEGNFPDYVMSQIRRNSWQSPTAIQSQAWPIALSGRNLVGIAQTGSGKTLGFILPAIV 165

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA QV +   ++G+   L  A + GG P   Q + L
Sbjct: 166 HVNHQPYLEHGDGPIVLVLVPTRELAQQVLEVSNEFGRASQLKTACVYGGAPKGPQLRDL 225

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGA++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 226 ERGAEICIATPGRLIDFLEAGKTNLRRTTYLVLDEADRMLDMGFEPQIRKILDQIRPDRQ 285

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQL 238
           TL++SAT   E+++++E FL +  ++ +     TA       +     + K+   +    
Sbjct: 286 TLMWSATWPKEVRRLAEEFLNDYIQVNIGALQLTANHNILQIIDVCMDHEKEEKLVKLLN 345

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q+     +IF   K+   ++   +++ G+ V +IHG+  Q+ R   L++F+ G   +
Sbjct: 346 EIMQEKENKTLIFVETKRKADDIARRMKRDGWPVLSIHGDKSQQERDWALNDFRNGRNPI 405

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RGLD+ D+  V NFD PN +E+Y+HRIGRTGR+   G A+T     + K   
Sbjct: 406 LVATDVASRGLDVEDIKFVINFDYPNCSEDYVHRIGRTGRSTNTGTAYTFFTPGNAKQAS 465

Query: 359 AIEKLIEKKVDWLNGDLSSLN 379
            +  ++ +    ++  L  L 
Sbjct: 466 DLVNVLREAKQVISPKLLQLE 486


>gi|297824215|ref|XP_002879990.1| hypothetical protein ARALYDRAFT_483345 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297325829|gb|EFH56249.1| hypothetical protein ARALYDRAFT_483345 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 627

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 134/390 (34%), Positives = 208/390 (53%), Gaps = 15/390 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA++ L   +   +    YVKPTP+Q   IP++L+  D+   AQTG+GKTA+F  P+++
Sbjct: 158 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIIS 217

Query: 62  ILEKGRA-------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            + K +        R   P  +IL PTRELA+Q+ D  +K+     + V +  GG P   
Sbjct: 218 GIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQ 277

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++LERG D+L+ TPGR+ D   R ++ M  I  L +DEADRMLDMGF P I+ I   +
Sbjct: 278 QLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQM 337

Query: 175 PFTRQTLL----FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
               + +     FSAT   E+Q+++ +FL N   + V    S+ + I            +
Sbjct: 338 DMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKR 397

Query: 231 KCALLQQLLQSQDTMKN----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              +     Q ++ ++      ++F   K+   +L + L   GF   +IHG+  Q+ R  
Sbjct: 398 SHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREV 457

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G A 
Sbjct: 458 ALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLAT 517

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
                 +      + +L+++    +   L+
Sbjct: 518 AFFNDGNTSLARPLAELMQEANQEVPAWLT 547


>gi|332993053|gb|AEF03108.1| ATP-dependent RNA helicase, DEAD box family protein [Alteromonas
           sp. SN2]
          Length = 466

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 120/435 (27%), Positives = 207/435 (47%), Gaps = 6/435 (1%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTI 62
            DL +  K++  +    + + T IQ K++   +Q  D+   ++TG+GKT +F++P +  +
Sbjct: 4   TDLPVHHKIITKLESRNFTELTEIQEKSMLPAIQGKDIIASSKTGSGKTLAFLIPAINRM 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + +     + PR LIL PTRELA QV    +      NL+  L++GG  +  Q K L R 
Sbjct: 64  MSQKALSRQDPRALILAPTRELAKQVFIEAKTMCTGLNLSCTLVVGGENYNDQVKALRRN 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ T GR+ DH     + +N +E+L+ DEADRMLD+GF   +  I       ++  +
Sbjct: 124 PHIIVGTAGRVADHLKDKSIFLNGLELLIFDEADRMLDLGFSEQLNMINEFANHRKRQTM 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
             +   D ++            + V+   STA   +      +A   +    L     S 
Sbjct: 184 LFSATLDSIELNYMTARLTKAAVRVSVGDSTAHHGDIQQQCFFADNIEHKDALLHHEISN 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T    I+F   +++   L   L K      A+ G++ Q  R  I+S F  G   ++V +
Sbjct: 244 RTYNQAIVFTATREDTDRLTTMLNKDKLEAIALRGDLPQNQRAAIMSEFARGQHSVLVTT 303

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLD+  VG V NFD+P  A+ YIHRIGRTGRAG+ G+A + V   D K   A++ 
Sbjct: 304 DVASRGLDLSKVGLVINFDLPKNADEYIHRIGRTGRAGQKGEAASFVGPRDWKSFIALKA 363

Query: 363 LIEKKV-----DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            ++  +     + L      +  P  K D  ++  ++++      +    R      ++ 
Sbjct: 364 HLQYDLECEAHEALPAKFKGIKAPTPKQDTQKNKASKQDGAEATVAKKVRRVDTMAGTEI 423

Query: 418 SHIPLKESEKISKLQ 432
              P+K   +  +L+
Sbjct: 424 GMAPVKRKPRKVELE 438


>gi|126664017|ref|ZP_01735011.1| possible ATP-dependent RNA helicase [Flavobacteria bacterium BAL38]
 gi|126623966|gb|EAZ94660.1| possible ATP-dependent RNA helicase [Flavobacteria bacterium BAL38]
          Length = 448

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 128/431 (29%), Positives = 216/431 (50%), Gaps = 4/431 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  L   +  A+ + G+V  TPIQ K+  ++L   D+ GIAQTGTGKT +++LP+L 
Sbjct: 3   TFQEFDLPKSLQKALDELGFVHATPIQEKSHSVILSGRDMMGIAQTGTGKTFAYLLPILK 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             +           +IL PTREL  QVA+  EK  K  ++    + GG+    Q K L +
Sbjct: 63  QWKFQNNESARI--VILVPTRELVVQVAEEVEKLTKYMSVRTLGIYGGVNINTQRKALAQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+L+ TPGR++D    G L  + ++ LVIDE D +L++GF   + +I S++   +Q +
Sbjct: 121 GVDILVGTPGRVMDLGLDGVLRFDELQKLVIDEFDEILNLGFRTQLTSILSMMRGKKQNI 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT+E+  + + + + P+ + +    +  E IE          +K   L   + ++
Sbjct: 181 LFSATMTEEVDAMLDEYFEFPEEVSLAQSGTPLEQIEQIVYKVPNFLTKLNMLKHLVRET 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   +  I   N++   +      E+       IH N  Q  R+  +++F+ G ++ +V 
Sbjct: 241 ETMERVLIFVNNKRIVDLVFETLDEEFPGQFGVIHSNKSQNYRLNTMASFQAGELRGLVT 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLDI D+ HV N       E Y+HRIGRTGRA + G A +LV+  +++    +E
Sbjct: 301 TDIMARGLDISDITHVINLQFTEEPEKYMHRIGRTGRADKTGIAISLVSPSEVESKIEVE 360

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
            L++ K+    L  DL      L+     +        P  +    F ++K   +     
Sbjct: 361 LLMDTKIKEFPLPEDLKIEERYLDFEKEKKKMKFLLKTPKKEGGEAFHKKKDKNAKVNLG 420

Query: 420 IPLKESEKISK 430
            P K   + ++
Sbjct: 421 GPGKRKPRKTE 431


>gi|157371044|ref|YP_001479033.1| ATP-dependent RNA helicase DbpA [Serratia proteamaculans 568]
 gi|157322808|gb|ABV41905.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
          Length = 460

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 122/373 (32%), Positives = 200/373 (53%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L
Sbjct: 4   VSFSSLPLPAEQLANLNELGYAEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             +   +   +    LIL PTRELA QV+    +  +       L + G  P   Q   L
Sbjct: 64  DKINVAQVAAQA---LILCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGPQLDSL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +++ TPGRI +H  +  L+++ +++LV+DEADRMLDMGF   I ++ S  P  RQ
Sbjct: 121 VHAPHIVVGTPGRIQEHLRKKTLVLDELKVLVLDEADRMLDMGFADDIDDVISYTPPQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    +++         +R  +N      E         Y     +   +    
Sbjct: 181 TLLFSATYPSGIER----ISARVQRSPLNVEVDDGEEQTTIEQRFYETTRDQRPAVLVSA 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + ++FCN K++  ++  +LE +G +V A+HG+++QR R ++L  F   + +++
Sbjct: 237 IRHYQPSSCVVFCNTKRDCQSVYEALESRGINVLALHGDLEQRDRDQVLVRFANRSCRVL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++  V N+++    E ++HRIGRTGRAG  GKA +L   +++    A
Sbjct: 297 VATDVAARGLDIKELELVVNYELAFDPEVHVHRIGRTGRAGLSGKAISLCTPQEMTRAHA 356

Query: 360 IEKLIEKKVDWLN 372
           IE  ++ KV W  
Sbjct: 357 IEDYLQTKVKWAP 369


>gi|320587284|gb|EFW99764.1| ATP-dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 481

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 136/429 (31%), Positives = 206/429 (48%), Gaps = 21/429 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL   +       GY  PTPIQ   IP+ L+  D+ G A+TG+GKT +F LPML 
Sbjct: 71  TFKELGLVDALCEVCEMLGYTAPTPIQAAAIPVALKNRDIIGTAETGSGKTIAFALPMLQ 130

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     R R    L+L PTRELA Q+   FE +     L  A+++GG+           
Sbjct: 131 AL---LDRPRPLFGLVLSPTRELAVQIGQTFESFAAIS-LRCAVVVGGMDM--------- 177

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V          H       + +++ LVIDEADR+LDM F P ++ I   +P  R+T+
Sbjct: 178 ---VSQSIALAKKPHVVTKGFSLKHLQYLVIDEADRLLDMDFGPILEKILRHLPRERRTM 234

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM+ +++ +    L++P R+ V + +    +     V       K        L +
Sbjct: 235 LFSATMSSQVESLQRASLRDPVRVNVASSAHQTVSTLKQSVIVTPTTRKDV--CLVYLVN 292

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   ++ ++F         L   L   GF    +H  + Q  R+  L+  K G+ ++++A
Sbjct: 293 EFYGQSIMVFTRTIYETQRLAILLRALGFGAVPLHARLSQSQRLSALNKIKSGSREMLIA 352

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP +G V N+DVP  ++ Y+HR+GRT RAG+ G A  LV + D  H  A+E
Sbjct: 353 TDVAARGLDIPHIGIVINYDVPQDSKTYVHRVGRTARAGKSGHAVNLVTQYDHTHFLAVE 412

Query: 362 KLI--EKKVDWLNGDLSSLNPPLEKIDIAQ-HNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           K I  E+K+     D   L     +++ AQ H H      I Q        +     Q+ 
Sbjct: 413 KAIGMERKILPFPIDREELMMFNPRVEEAQRHAHVEMRTFIEQNGKRKKTGRSAAGGQRR 472

Query: 419 HIPLKESEK 427
           H  +   E 
Sbjct: 473 HDGMDREEH 481


>gi|212539820|ref|XP_002150065.1| DEAD box  RNA helicase (Hca4), putative [Penicillium marneffei ATCC
           18224]
 gi|210067364|gb|EEA21456.1| DEAD box RNA helicase (Hca4), putative [Penicillium marneffei ATCC
           18224]
          Length = 819

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 123/460 (26%), Positives = 220/460 (47%), Gaps = 20/460 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L LS      +  + +   T IQ ++IP  L+  D+ G A+TG+GKT +F++P+L 
Sbjct: 50  SFSELPLSDPTTSGLAASHFKSLTDIQSRSIPYALKGRDILGAAKTGSGKTLAFLIPVLE 109

Query: 62  ILEKGRARVRMPRTLIL-EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L + +         I+  PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L 
Sbjct: 110 NLYRKKWTEYDGLGAIVLSPTRELAIQIFEVLRKVGRYHTFSAGLVIGGKSLKEEQERLG 169

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +       +L + N+++LV+DEADR++DMGF   +  I   +P TRQT
Sbjct: 170 RMNILVCTPGRMLQHLDQTAELDVYNLQMLVLDEADRIMDMGFQKTVDAIVEHLPKTRQT 229

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT T ++  ++   LQ+P+ + V+  +++A               +K         
Sbjct: 230 LLFSATQTKKVSDLARLSLQDPEYVAVHEAAASATPSTLQQHYIITPLPEKL-DTLFSFI 288

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQL 298
             +     I+F +  K V  +  SL      +    +HG   Q  R+ I + F      +
Sbjct: 289 RSNLKSKTIVFMSSGKQVRFVYESLRHLQPGIPLLHLHGRQKQGGRLDITTRFANSKHAV 348

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + ++D+AARGLD P V  V   D P  A+ YIHR+GRT R  R+G+A   +   + + + 
Sbjct: 349 LFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERNGRAVLFLDPSEEEGM- 407

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +++L +KKV            P+E+I++         + +  ++  F   +  Y  QK+
Sbjct: 408 -LKRLEQKKV------------PIERINVKAKKQQSVKDQL--QNMCFKDPELKYLGQKA 452

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
            I   +S  + K ++  +  D     F  ++     P+ +
Sbjct: 453 FISYVKSIHVQKDKEVFKVKDLALDAFAASLGLPGAPRIK 492


>gi|17552642|ref|NP_497743.1| hypothetical protein C46F11.4 [Caenorhabditis elegans]
 gi|3874996|emb|CAB03765.1| C. elegans protein C46F11.4, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 811

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 122/380 (32%), Positives = 185/380 (48%), Gaps = 5/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA       ++ A+  + Y +PTPIQ   IP  L   DV GIA+TG+GKTA+++ P + 
Sbjct: 266 SFAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIV 325

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK- 118
            +           P  +I+ PTRELA QV    +K+ K YN+      GG     Q+ + 
Sbjct: 326 HIMDQPDLKAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSKWEQSNEL 385

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              GA++++CTPGRI+D    G         LV DEADRM DMGF   +++I+  V   R
Sbjct: 386 QNEGAEMVVCTPGRIIDLVKMGATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPDR 445

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT   ++++++ + L +P RI           IE        Q  K   L++ L
Sbjct: 446 QCLMFSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVFVMQNQDVKLHWLIRNL 505

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++     K  I    +  +         K    V         ++             Q+
Sbjct: 506 VEFASLGKVLIFVTKKLDSEDVAKKLKMKDFDIVLLH--GDMLQAERNENLLKFRKKSQI 563

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI ++  V NFD+    + ++HRIGRTGRAG  G A+TLV ++DI+ + 
Sbjct: 564 LVATDVAARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEKDIEMVG 623

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + K +E     +   L  L
Sbjct: 624 HLVKNLESVSQEVPKPLMDL 643


>gi|256825728|ref|YP_003149688.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
 gi|256689121|gb|ACV06923.1| DNA/RNA helicase, superfamily II [Kytococcus sedentarius DSM 20547]
          Length = 499

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 144/433 (33%), Positives = 224/433 (51%), Gaps = 25/433 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FAD G+ P +V A+   G   P PIQ  T+P+ L R D+ G A+TGTGKT  F +PM  
Sbjct: 5   TFADFGIHPDIVAALEAGGITHPFPIQSMTLPVALDRQDIIGQAKTGTGKTLGFGVPMVQ 64

Query: 60  -----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                         R   P+ L + PTRELA QVA + E+      + V  + GG  +E 
Sbjct: 65  NVVGPNHEGYDQLERPGAPQALAVAPTRELALQVATDLERAAARLGVRVLTVYGGRAYEP 124

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG ++++ TPGR++D   RG L + +   +V+DEAD MLD+GF+P ++ + ++ 
Sbjct: 125 QIEALERGVEIVVGTPGRLIDLAERGHLTLAHARTVVLDEADEMLDLGFLPDVEKLLAMT 184

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNP-KRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           P  R T+LFSATM   +  ++  ++  P     +        T+E      Y  ++    
Sbjct: 185 PAGRHTMLFSATMPGAVVAMARRYMNQPTHIRAMEEVPGAGATVEAIDQFVYRAHAMDKV 244

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            +   L   +     I+F   K+    +   L ++GF+  AIHG++ Q +R + L  F+ 
Sbjct: 245 EMVARLLQSEGRGLTIVFTRTKRTAAKVAEQLVERGFAAAAIHGDLGQGAREQALRAFRT 304

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G + ++VA+D+AARG+D+ DV HV N+  P   + Y+HRIGRTGRAG++G A TLV  +D
Sbjct: 305 GKVDVLVATDVAARGIDVEDVTHVVNYQCPEDEKTYLHRIGRTGRAGKNGVAVTLVDWDD 364

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           +     I + +E               P E    + H +A  +  IP + TG     +  
Sbjct: 365 LHRWAVINRALEL----------GAPEPAETYSTSAHFYA--DQRIPAEVTG-----ELP 407

Query: 414 SSQKSHIPLKESE 426
           S+Q++   LK  E
Sbjct: 408 SAQRTRAGLKAEE 420


>gi|170720088|ref|YP_001747776.1| ATP-dependent RNA helicase RhlB [Pseudomonas putida W619]
 gi|169758091|gb|ACA71407.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 483

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 210/380 (55%), Gaps = 11/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F D  LS +++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ +   
Sbjct: 96  FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGKDAIGRAQTGTGKTAAFLISIISQ 155

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K 
Sbjct: 156 LQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKT 215

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG + ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 216 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 275

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT TD++  +++ +  +P  +E+   +  +ET+E    A       K    
Sbjct: 276 SERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASETVEQHVFAVAGSDKYKLLYN 335

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                +Q+  +  ++F N+K  V  +   L + G +   + G++ Q  R++ L +F+EG 
Sbjct: 336 L---VTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGR 392

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 393 ITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSY 452

Query: 356 HIDAIEKLIEKKVD-WLNGD 374
            + AIE+L+ +K+   +  D
Sbjct: 453 QLPAIEELLGRKIKCEMPPD 472


>gi|238758478|ref|ZP_04619655.1| ATP-independent RNA helicase dbpA [Yersinia aldovae ATCC 35236]
 gi|238703382|gb|EEP95922.1| ATP-independent RNA helicase dbpA [Yersinia aldovae ATCC 35236]
          Length = 457

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 127/375 (33%), Positives = 205/375 (54%), Gaps = 8/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L
Sbjct: 1   MSFSSLTLPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             +  G     + + LIL PTRELA QV+    +  +       L +  G P   Q   L
Sbjct: 61  DKIAVGE---FVTQALILCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +++ TPGRI +H  +  L+++ ++ILV+DEADRMLDMGF   I ++ +  P  RQ
Sbjct: 118 VHAPHIVVGTPGRIQEHLRKKTLVLDELKILVLDEADRMLDMGFTDAIDDVIAYTPVQRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    +++         +R  +N      +         +    +K   L   +
Sbjct: 178 TLLFSATYPAGIER----ISARVQREPLNVEVDDGDEEPAIEQVLFETTREKRLPLLISV 233

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S     + ++FCN KK+  ++  +LE +G SV A+HG+++QR R ++L  F   + +++
Sbjct: 234 LSHYQPDSCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANHSCRVL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI D+  V NF++    E ++HRIGRTGRAG  G A +L   +++    A
Sbjct: 294 VATDVAARGLDIKDLALVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHA 353

Query: 360 IEKLIEKKVDWLNGD 374
           IE  ++ K+ W + +
Sbjct: 354 IEDYLQIKLKWTSAE 368


>gi|218192669|gb|EEC75096.1| hypothetical protein OsI_11255 [Oryza sativa Indica Group]
          Length = 1023

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 144/380 (37%), Positives = 219/380 (57%), Gaps = 4/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD G   +++ A+   GY KPT IQ + +P+VL   D+ GIA+TG+GKTA+FVLPM+ 
Sbjct: 232 SFADCGFPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIV 291

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       +   P  ++  PTRELA Q+    +K+ K YNL VA + GG+    Q K+L
Sbjct: 292 HIMDQPELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKEL 351

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G +++I TPGR++D      L M     LV+DEADRM D+GF P I++I   +   RQ
Sbjct: 352 KAGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 411

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  ++++++   L +P R+ V    S  E I+       +   K   LL++L 
Sbjct: 412 TLLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLLSDAEKMPWLLEKLP 471

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     ++F  +K  V  +   L ++GF + A+HG+ DQ SRM+ L  FK G   ++
Sbjct: 472 GMIDDGD-VLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVL 530

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIKHID 358
           VA+D+AARGLDI  +  V NFD+    + +IHRIGRTGRAG + G A+TL+ +++++   
Sbjct: 531 VATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEVRFAG 590

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +   +      +  +L  L
Sbjct: 591 ELVHCLIAAGQDVPNELMDL 610


>gi|87118170|ref|ZP_01074069.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
           sp. MED121]
 gi|86165804|gb|EAQ67070.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
           sp. MED121]
          Length = 459

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 136/445 (30%), Positives = 225/445 (50%), Gaps = 8/445 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F+D G   +++ ++   G+   T IQ + IP  +   D+   ++TG+GKT ++++P +
Sbjct: 15  LQFSDFGFDARILQSLRHWGFDSATQIQAQAIPEAMAGRDLLASSKTGSGKTLAYLIPAL 74

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +        +  R LIL PTRELA QV         +  L  AL++GG  F  Q K L
Sbjct: 75  HRVYRVKALSNKDARVLILVPTRELAKQVYSQLRLLVASSKLKTALILGGENFNDQIKDL 134

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++    ++ TPGR++DH N+  + ++ +E+L++DEADRMLD+GF   ++ I        +
Sbjct: 135 QKDPQFIVATPGRLVDHLNQRNMFLDGLELLILDEADRMLDLGFADQLKQIDDAASHRLR 194

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LF +   D  +          +   V   + T    +         +      +   +
Sbjct: 195 QTLFFSATLDNAEVNDIAQRLLNEPSRVAIGAGTDVHSDIKQKFYLCDHLDHKEAILTHV 254

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+T+K GIIF   K + V L   LE++GF+  A++G++ Q +R K++ +F  G  Q++
Sbjct: 255 LEQETIKQGIIFTATKLDTVRLASLLEEKGFTTQALNGDLTQSARNKVMDSFARGHFQIL 314

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++DLA+RGLDI +V HV NFD+P  +E Y+HR GRTGRAG  G AF+LV  +D  +  A
Sbjct: 315 VSTDLASRGLDIANVTHVINFDIPKHSEEYVHRTGRTGRAGFQGDAFSLVGPKDWHNFKA 374

Query: 360 IEKLIEK-----KVDWLNGDLSSLNP--PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           +E  + +      ++ L      L P    +K    Q   A+     P K  G  + K +
Sbjct: 375 LETFLSRSFSFDAIEGLEASFKGLAPKKVFKKSKKPQEKKAKAAEKAPAKRRGPSKTKLH 434

Query: 413 YSSQKSHIPLKESEKISKLQQDIQE 437
            +SQ    P K  +K   +  D +E
Sbjct: 435 TNSQDGFEPFKVPKKSKGIALDDKE 459


>gi|156390799|ref|XP_001635457.1| predicted protein [Nematostella vectensis]
 gi|156222551|gb|EDO43394.1| predicted protein [Nematostella vectensis]
          Length = 429

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 161/375 (42%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 49  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDIICQAKSGMGKTAVFVLATLQQ 108

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +              +  + F KY  N  + V      I  + Q  K    
Sbjct: 109 LEPVDGQVSVLVMCHTRELAFQIHKEYERFCKYMSNIKIAVFFGGINIKKDQQTLKTNCP 168

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +     +   L +    ++ +    +  +     +Q +  + P  +Q ++
Sbjct: 169 HIVVGTPGRILALTREKTLNLKHAKHFILDECDKMLEQLDMRRDVQEVFRMTPHEKQVMM 228

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  E++ V + F+Q+P  + V+  +         +        K   L        
Sbjct: 229 FSATLPKEIRSVCKKFMQDPMEVYVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL--LDL 286

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF    +    L H L KQ F    IH  + Q  R+     FK    +++VA+
Sbjct: 287 LEFNQVIIFVKSVQRCTALSHLLLKQNFPAICIHRGMKQEERLARYQQFKNFEKRMLVAT 346

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 347 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEADAKTLNEVQ 406

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 407 DRFEVNVGELPDEID 421


>gi|12325365|gb|AAG52624.1|AC024261_11 photosystem II protein psbT, putative, 5' partial; 92652-90780
           [Arabidopsis thaliana]
          Length = 347

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 121/351 (34%), Positives = 186/351 (52%), Gaps = 5/351 (1%)

Query: 25  TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84
           + IQ + +  +L+  DV   AQ+GTGKT+   + +  I+     +V++   L+L P+REL
Sbjct: 1   SEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQV---LVLSPSREL 57

Query: 85  AAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLM 144
           A+Q     +  G + N+     IGG       KKLERG   +  TPGR+ D   RG L  
Sbjct: 58  ASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQT 117

Query: 145 NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKR 204
             +++LV+DE+D ML  G    I ++   +P   Q  L SAT+  E+ +++E F+ +P R
Sbjct: 118 KAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQEILEMTEKFMTDPVR 177

Query: 205 IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHS 264
           I V     T E I+  +V    +  K   L       + T+   IIFCN ++ V  L   
Sbjct: 178 ILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDL--YGRLTINQAIIFCNTRQKVDWLTEK 235

Query: 265 LEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPN 324
           +    F V ++HG+  Q+ R  I++ F+    ++++ASD+ ARG+D+  V HV N+D+PN
Sbjct: 236 MRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPN 295

Query: 325 RAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDL 375
             E YIHRIGR GR GR G A   V   D+K +  IE+    K+  +  DL
Sbjct: 296 NPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKDIERHYGTKIREMPADL 346


>gi|312899136|ref|ZP_07758514.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
 gi|310619803|gb|EFQ03385.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
          Length = 419

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 202/367 (55%), Gaps = 5/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LG++  +V A+ +    +PT +Q + +P  L+ H++   AQTGTGKT +F+LP+  
Sbjct: 4   TFASLGINASLVEALTNQHITEPTAVQEQAVPAALKGHNLLVQAQTGTGKTLAFLLPIFQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++K    V M + LI+ PTREL+ Q+A   + +     L +  LIGG   E Q +KL R
Sbjct: 64  GIKK---DVSMTQALIMAPTRELSEQLATVADSFTPVTGLDILNLIGGKTIENQLQKLHR 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR+LDH  R  L ++ +  +V+DEAD+ML  GF+  +  +  + P  RQ L
Sbjct: 121 RPQVIIGTPGRLLDHCRRNSLDLSGVHYVVVDEADQMLQSGFLSEVDELIGMTPKKRQLL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT+ D+++ +++  +  P  + V    +         +   ++  K   L    + +
Sbjct: 181 FFSATIPDKVRSLAKKHMDRPLSLTVREGETVTLENIEQRIYMMSEDRKFEKLCD--MLT 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      ++FCN K     L   L  +GF+V  + G++ Q  R +++ +F +   Q++VA
Sbjct: 239 EFNPYLAVVFCNTKDRTKKLASDLIARGFNVAELQGDMSQGRRNQVMRDFAKAKTQILVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARG+DI  + HVF++DVP   + YIHRIGRTGRAG  G +       D   I  IE
Sbjct: 299 SDIAARGIDIEGISHVFSYDVPGDTDYYIHRIGRTGRAGSSGLSVMFATGADEDKIRRIE 358

Query: 362 KLIEKKV 368
             I+  +
Sbjct: 359 HTIQATI 365


>gi|255956657|ref|XP_002569081.1| Pc21g20950 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590792|emb|CAP96992.1| Pc21g20950 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 805

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 121/454 (26%), Positives = 204/454 (44%), Gaps = 24/454 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-L 60
           +F+DL LS      +  + +   T IQ + I    +  D+ G A+TG+GKT +F++P+  
Sbjct: 47  NFSDLPLSEPTAKGLAASHFKTLTDIQSRAINHAFKGRDILGAAKTGSGKTLAFLVPILE 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  K    +     L+L PTRELA Q+ +   K G+ +N +  L+IGG     +  +L 
Sbjct: 107 NLYRKKWTELDGLGALVLSPTRELAIQIFEVLRKIGRYHNFSAGLIIGGKSLREEQDRLG 166

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +           NN+++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 167 RMNILICTPGRMLQHLDQTAMFETNNLQMLVLDEADRIMDMGFQKTVDAIIDHLPKQRQT 226

Query: 181 LLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT T ++      +  +          +S   +             K   L   + 
Sbjct: 227 MLFSATQTKKVGDLARLSLQEPEYVSVHEAAASATPSTLQQHYTITPLPQKLDTLWSFIR 286

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +  +     +   ++   V       + G S+  +HG   Q  R+ I + F +    ++
Sbjct: 287 SNLKSKTVVFLSSGKQVRYVYESLRQLQPGISLLHLHGRQKQGGRLDITTKFSQAQHAVL 346

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+ ARGLD P V  V   D P  A+ YIHR+GRT R  R G+A   +   + K    
Sbjct: 347 FATDVVARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERVGRAVLFLDPSEEKGF-- 404

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +++L  KKV            P+EKI+I  +      N +  ++  F   +  Y  QK+ 
Sbjct: 405 LKQLEHKKV------------PIEKINIKSNKQQSVKNQL--QNMCFKDPELKYLGQKAF 450

Query: 420 IP------LKESEKISKLQQDIQENDADSLGFRG 447
           I       +++ ++  K+++   E  A SLG  G
Sbjct: 451 ISYVKSIYVQKDKETFKIKELPLEEYAASLGLPG 484


>gi|50545487|ref|XP_500281.1| YALI0A20328p [Yarrowia lipolytica]
 gi|74660175|sp|Q6CGD1|DBP4_YARLI RecName: Full=ATP-dependent RNA helicase DBP4
 gi|49646146|emb|CAG84219.1| YALI0A20328p [Yarrowia lipolytica]
          Length = 740

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 128/472 (27%), Positives = 222/472 (47%), Gaps = 27/472 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F +L LS   +  + ++ YV  T +Q + IP  LQ HD+ G A+TG+GKT +F++P + 
Sbjct: 40  KFEELPLSEATIEGLKNSHYVTCTDVQKRAIPPALQGHDLLGAARTGSGKTLAFLVPVLE 99

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +     + V     L++ PTRELA Q+     K G+ ++ +  L+IGG     +  +L 
Sbjct: 100 CLFRNKWSDVDGLGALVISPTRELAVQIFQVLRKIGRCHSFSAGLVIGGKDVAMEADRLA 159

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      +          ++N+++LV+DEADR+LDMGF   +  I   +P  RQT
Sbjct: 160 KLNILICTPGRLLQHMDQTSGFDLSNVKMLVLDEADRILDMGFKKTMDAILENLPVDRQT 219

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT T  +  ++   L +PK I  N  ++++            +   K         
Sbjct: 220 LLFSATQTKSVSDLARLSLADPKYISANPDTTSSTPKNLEQNYVCVELQDKL-DTLWGFL 278

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQL 298
              T    I+F +  K V  +  +       +    +HG   Q +RM ++S F + +   
Sbjct: 279 RTHTKFKIIVFFSSSKQVRYVYETFRTLQPGIPLLHLHGKQKQGARMDVVSKFSKASSSC 338

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+ ARG+D P V  V   D P  A  YIHR+GR+ R G+ GKA   +   +   + 
Sbjct: 339 LFATDIVARGIDFPAVHWVVQVDCPEDAATYIHRVGRSARFGKSGKALLFLTPTEEPAM- 397

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            I++L  K +            P+ K+ I    + +K+     ++  F   +  Y  QK+
Sbjct: 398 -IQRLEAKHI------------PINKLTI--RPNKKKSIKNQLQALCFKSPEIKYLGQKA 442

Query: 419 HIP------LKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            I       +++ ++I + ++   E  A+SLG  G  P   L K+  K+ ++
Sbjct: 443 FISYYKSIFIQKDKEIFQFEKIPSEAFAESLGLPG-APQIKLGKSAEKMKEE 493


>gi|99080768|ref|YP_612922.1| DEAD/DEAH box helicase-like [Ruegeria sp. TM1040]
 gi|99037048|gb|ABF63660.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TM1040]
          Length = 445

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 140/386 (36%), Positives = 218/386 (56%), Gaps = 6/386 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ + L   +   +   G+  PTPIQ + IP  L   DV G+AQTGTGKTA+F +P++ 
Sbjct: 3   EFSSMDLPKHLHTRMEAMGFNTPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLVA 62

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            + +   +         IL PTRELA Q+A+      +   L   L++GG+    Q  +L
Sbjct: 63  QMLEYGRKPAAGTVRGLILAPTRELANQIAETLRGLTEGSPLKTGLVVGGVSINPQIHRL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D+L+ TPGR+LD  +R  L + + + LV+DEAD+MLD+GFI  ++ I +L+P  RQ
Sbjct: 123 SKGTDILVATPGRLLDILDRKALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEERQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  ++ +++  +L++P RI     +   +       + +     +   L + L
Sbjct: 183 TMLFSATMPKQMNEIANAYLKSPVRI---EVTPPGKPAAKVTQSVHFIAKAEKLSLLKEL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S    +  ++F   K  +  L   L+K GF   AIHGN  Q  R + L  FK G I ++
Sbjct: 240 LSAHDGERTLVFGRTKHGMEKLMKVLDKAGFKAAAIHGNKSQGQRERALKAFKSGEITVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIPDV +V+N+++PN  + Y+HRIGRT RAG+ G+A    A ++I  + A
Sbjct: 300 VATDVAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEIGDLKA 359

Query: 360 IEKLIEKKVDWLNGD-LSSLNPPLEK 384
           I+K +   +   +G     L  P  K
Sbjct: 360 IQKTMGITIPVASGRAWEELPDPAAK 385


>gi|261314221|ref|ZP_05953418.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|261303247|gb|EEY06744.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
          Length = 462

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 151/421 (35%), Positives = 233/421 (55%), Gaps = 8/421 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 16  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 76  IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 135

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 136 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 195

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 196 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEI---TQVVHPVPTKEKRRLLSAML 252

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 253 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 312

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P   HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 313 ATDIAARGIDVPGSSHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 372

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E++   K+   +  +     P+ K    Q    R      +K+     R+    + + H
Sbjct: 373 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--GQRTEQAESRKAPAHKHRRPAQKAGEQH 430

Query: 420 I 420
            
Sbjct: 431 R 431


>gi|254706759|ref|ZP_05168587.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
          Length = 535

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 151/421 (35%), Positives = 233/421 (55%), Gaps = 8/421 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEI---TQVVHPVPTKEKRRLLSAML 325

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 326 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P   HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 386 ATDIAARGIDVPGSSHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 445

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E++   K+   +  +     P+ K    Q    R      +K+     R+    + + H
Sbjct: 446 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--GQRTEQAESRKAPAHKHRRPAQKAGEQH 503

Query: 420 I 420
            
Sbjct: 504 R 504


>gi|218281439|ref|ZP_03487888.1| hypothetical protein EUBIFOR_00453 [Eubacterium biforme DSM 3989]
 gi|218217417|gb|EEC90955.1| hypothetical protein EUBIFOR_00453 [Eubacterium biforme DSM 3989]
          Length = 475

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 127/419 (30%), Positives = 220/419 (52%), Gaps = 16/419 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  + L   ++ A+   GY KP P+Q + IP +L + D    ++TG+GKTASF +P++
Sbjct: 1   MTFEQMNLDQNIIQALHTLGYEKPLPVQEQVIPNILSQTDCIVKSRTGSGKTASFAIPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE        P+ L+L PTRELA Q+  +F++ G    +    + G  PF+ Q + L+
Sbjct: 61  QNLEIDERS---PQALVLTPTRELALQIQQDFDRIGTFKKIKTLPIFGKQPFKFQKEDLK 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V+I TPGR+LDH  +  L  + I+ +V+DEAD ML+M F+  +Q I   +P    T
Sbjct: 118 QRCHVVIGTPGRVLDHLQQQTLDPSKIKYVVLDEADEMLNMNFLDEVQAILKYMPKKHVT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT    +Q++S+ +L  P ++++ + +       +     Y    +   L    L 
Sbjct: 178 CLFSATYPAVIQRMSKKYLYKPAKVDLTSTNKP-----NILEEAYHVNEEHKELFLLHLL 232

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +    ++ +IFC  +  V  +   LEK   SV  IHG + Q  R+  +  FK+G ++++V
Sbjct: 233 ALKKPESCMIFCKTQARVDAVYACLEKNQVSVDKIHGGMMQEERLSHMRRFKKGKVRILV 292

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A+RG+D+  V  + N+D+P+  E Y HRIGR+GR    G A +LV + D    + +
Sbjct: 293 CTDVASRGIDVFKVEMIINYDMPSPVETYTHRIGRSGRVDEQGLAISLVNEYDGVRKEKL 352

Query: 361 EKLIEKKVDWLN------GDLSSLNPPLE--KIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           E+ +   + + +       DL  L+   E  ++ + +    RK       + G +++ +
Sbjct: 353 EEYLGYNLPFKDEGEVYLSDLDVLDSLKESNRVVVDKSKDLRKGITKIYLNGGKNKKIR 411


>gi|291225666|ref|XP_002732826.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 23-like
           [Saccoglossus kowalevskii]
          Length = 768

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 135/434 (31%), Positives = 215/434 (49%), Gaps = 40/434 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + GL   ++  +   GY +PTPIQ + IP+ LQ  DV G+A+TG+GKTA+F++P+L 
Sbjct: 340 SWTEAGLPDYIIDVIDSMGYKEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLIPLLV 399

Query: 62  ILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +       +     + P  +IL PTRELA Q+      +GK   +    +IGGI  E Q
Sbjct: 400 WISSLPKIARQEDVDQGPYAVILAPTRELAQQIEAETINFGKPLGIRTVSIIGGISREDQ 459

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-- 173
             KL  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q+I     
Sbjct: 460 GFKLRMGCEIVIATPGRLIDVLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQHILEYLP 519

Query: 174 -----------------------VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
                                      RQT++F+ATM   +++++ N+L+ P  + + + 
Sbjct: 520 VSNQKPDTDDAEDHDKLLANFASKHKYRQTVMFTATMPPPVERIARNYLRRPAVVHIGSV 579

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               + +E        Q  ++  +       +  +   +   NQKK    L  SLEK G+
Sbjct: 580 GKPVDRVEQVVYMVKQQEKRQKLVHLLEAGFEPPVMTFV---NQKKGCDVLAKSLEKMGY 636

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           +   +HG   Q  R   L++ K G   ++V +D+A RG+DI DV  V N+D+    E+Y 
Sbjct: 637 NATTLHGGKSQEQREFALASLKNGDKDILVCTDVAGRGIDIKDVSMVINYDMAKNIEDYT 696

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A +LV  +D   +  ++  +      L    S+  P L     AQH
Sbjct: 697 HRIGRTGRAGKTGLAVSLVTPDDKMVMYDLKHCL------LASPASTCPPELANHPDAQH 750

Query: 391 NHARKNNPIPQKST 404
                 +   ++ T
Sbjct: 751 KPGTVMSKKRKEET 764


>gi|145351012|ref|XP_001419882.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580115|gb|ABO98175.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 440

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 134/409 (32%), Positives = 212/409 (51%), Gaps = 9/409 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            FAD G S +++   + A +  P+PIQ ++ P+++  HD+ GIA TG+GKT +F +P + 
Sbjct: 30  SFADAGFSKELLR--VTAQFKTPSPIQAQSWPIIMSGHDMVGIAATGSGKTLAFGMPALT 87

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ--NKK 118
            I  +   +   P  L+L PTRELA Q A  F+  G+   +    + GG P   Q    K
Sbjct: 88  QIHSQPPCKPGQPICLVLAPTRELAQQTAKVFDDAGEASGVRCVCVYGGAPKYEQKAQMK 147

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              GA V++ TPGR+ D    G + ++ + +LV+DEADRMLD+GF P I+ I       R
Sbjct: 148 AGGGAAVIVATPGRLRDFMEEGVIKLDRVTMLVLDEADRMLDLGFEPEIRAIAGATRADR 207

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA---LL 235
           QT++FSAT    +Q ++  F+ NP ++ +      A       V       K      ++
Sbjct: 208 QTVMFSATWPQSVQSLASEFMCNPIKVRIGAEGLKASQSITQIVEVVEPQDKDRHLARVM 267

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q L     +   +IF   KK   NL   L ++      IHG++ Q  R K +  FK+GT
Sbjct: 268 KQYLGKGKEVPRTLIFGLYKKECANLHQRLSREWP-AVCIHGDMSQHDREKSVDAFKKGT 326

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            ++++A+D+AARGLDI +V +V N+  P   E+Y+HRIGRTGRAG  G A T     D  
Sbjct: 327 SRILIATDVAARGLDIKEVEYVINYTFPLTTEDYVHRIGRTGRAGATGLAHTFFTLHDKA 386

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
               +  ++ K    +  +L+     ++K +   +    K+  +  K+T
Sbjct: 387 RAGELVNVLRKAGAEVPEELTKFGTHVKKKESKLYGAHFKDVDMSVKAT 435


>gi|167625006|ref|YP_001675300.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167355028|gb|ABZ77641.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 474

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 147/450 (32%), Positives = 232/450 (51%), Gaps = 17/450 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F    L PK++ AV   GY + T +Q + +P+ ++  D+   AQTGTGKTA+F LP+L
Sbjct: 30  MNFDAFDLHPKILDAVSARGYQQLTQVQSQVLPVAMEGKDIMACAQTGTGKTAAFALPLL 89

Query: 61  TILEKGRA----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
             L +                  + L+L PTRELA QVADN   Y +        + GG 
Sbjct: 90  NRLIQEYNLFTEGDLEPEHQSKVKVLVLTPTRELAIQVADNISAYAQFLPFKTTAVYGGS 149

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q K L+ G D+L+ TPGR+ DH  +  L ++N+  LV+DEADRMLD+GF+  I+ +
Sbjct: 150 NMNPQRKALQAGVDILVATPGRLFDHIGQFGLDLSNVTHLVVDEADRMLDLGFVRDIEKV 209

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
             LV  T QTL FSAT ++ ++ ++E  L  P+ I V T    + T        Y   ++
Sbjct: 210 KKLVAATHQTLFFSATYSEAVKTLAEKMLLAPEWINVAT----SATASLITQEVYLVDTR 265

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           + A L   L  ++  +  ++F + +++  +L   L+  G      HG   Q +R + L  
Sbjct: 266 RKAELLSELIGRNNWQQVLVFVSTRESAEHLHAELKLDGVKNAVFHGEKTQGARNRALDE 325

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G +++MVA+D+AARGLDI  +  V N ++P  AE+Y+HR+GRTGRAG  G+A + V+
Sbjct: 326 FKSGKLRVMVATDVAARGLDIEALPLVINLELPFAAEDYVHRVGRTGRAGLAGRAISFVS 385

Query: 351 KEDIKHIDAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
            +D + +  IE LIE+ +    + G       P    D+       K +   +K    +R
Sbjct: 386 PQDREMLQEIELLIEQTLPCITMPGYEEGAPLPARYRDVVVKPVKEKGHN-KRKYEDKNR 444

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQEN 438
             KN   + ++      +      +D  + 
Sbjct: 445 PVKNAVGKSNYRSAASGKSSYGRSKDKAKK 474


>gi|87121888|ref|ZP_01077774.1| ATP-dependent RNA helicase [Marinomonas sp. MED121]
 gi|86162917|gb|EAQ64196.1| ATP-dependent RNA helicase [Marinomonas sp. MED121]
          Length = 433

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 113/439 (25%), Positives = 223/439 (50%), Gaps = 8/439 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L L P +  A++  G+ +PT IQ + IP+++   D+   A TGTGKT SF  P +
Sbjct: 1   MSFSELELDPTIEQAIIQLGFKEPTEIQTQGIPVLMDGEDLLASAPTGTGKTLSFCAPAV 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + ++  A    P+ LIL PTRELA Q+ +  ++   +  +   L++GG P+  Q ++L
Sbjct: 61  QHILDRDEASTNAPKALILAPTRELARQIFNLVKELLIHTRIQPQLIVGGTPYGMQQQQL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+L+ TPGR+ +  ++  L ++++   VIDEADRMLDMGF   I  +   +P  RQ
Sbjct: 121 SEDCDILVATPGRLKELDDKQWLDLSDVSYFVIDEADRMLDMGFADTITALVKELPKERQ 180

Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           T + SAT+  D+L ++++   +          S+     +   +A           + + 
Sbjct: 181 TAMLSATLDGDKLGQLADKIFKQTPEAIQINDSTRTIPSQIKQIAYRVDDDAHKEAIVKH 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  Q+ ++  ++F + + +V    + +         +HG + Q  R + +   ++G +Q+
Sbjct: 241 LLKQEGVQQALLFVSNRDHVDVWVNKIRALHIMCSGLHGVMKQGDRSEHMKQMQKGRLQV 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+P++  V N  +P ++++Y+HR GR  R G  G   +L+   D+  ++
Sbjct: 301 LVATDVAARGIDLPEINTVINLRLPQKSDSYVHRAGRASRDGNEGTCISLIDSTDLAMME 360

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            I++ ++  + +  G +  L    E     +    +       K      +    + +K 
Sbjct: 361 KIQRYMQSPIKF--GRIEGL----EAKTKVRSPATKSKKKKAPKLDKKALKAAATAEEKK 414

Query: 419 HIPLKESEKISKLQQDIQE 437
              ++    + K+++ +++
Sbjct: 415 QRKIQRKINLQKMKKALKD 433


>gi|289209627|ref|YP_003461693.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix]
 gi|288945258|gb|ADC72957.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix]
          Length = 440

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 128/380 (33%), Positives = 190/380 (50%), Gaps = 5/380 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F  L L   V   +   G+   TPIQ  T+P+ L   DV G AQTGTGKTA+F++     
Sbjct: 11  FDQLDLPEAVQAGIRATGFETCTPIQALTLPIALAGRDVAGQAQTGTGKTAAFLIATFNR 70

Query: 62  ---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                     R    R LI+ PTRELA Q+  + E  G+   L +AL  GG  +++Q ++
Sbjct: 71  LLRQAPAPDRRATDVRALIVAPTRELAIQIHKDAEMLGRETGLKLALAYGGTGYDSQREQ 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE GAD+LI TPGRI+D+F +    + + E++V+DEADRM D+GFI  ++ +        
Sbjct: 131 LEAGADILIGTPGRIIDYFKQKVFGLGHTEVVVLDEADRMFDLGFIKDVRFLMRRCAPAS 190

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           + L    + T  L+ +   +       +V   + T        V  Y    +K  L    
Sbjct: 191 ERLSMLFSATLSLRVMELAYEHMSNPEKVQVEAETLTADRVRQVIYYPANEEKIPL-LLG 249

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L      +  I+F N K     +C  L   G     + G++ Q  R  +L  F  G    
Sbjct: 250 LARDLKPERAIVFVNTKHGAEKVCDWLNVNGQKAALLSGDVPQNKRSSLLERFTAGEYAF 309

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGL IP V HVFNFD+P   E+Y+HRIGRT RAG  G A +   ++   ++ 
Sbjct: 310 LVATDVAARGLHIPAVTHVFNFDLPQSGEDYVHRIGRTARAGAEGDAISFGCEDSAFYLP 369

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            IE  + +++     D ++L
Sbjct: 370 DIESYLGERIPTETVDPAAL 389


>gi|197284022|ref|YP_002149894.1| ATP-dependent RNA helicase DbpA [Proteus mirabilis HI4320]
 gi|194681509|emb|CAR40383.1| ATP-independent RNA helicase [Proteus mirabilis HI4320]
          Length = 457

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 137/371 (36%), Positives = 217/371 (58%), Gaps = 9/371 (2%)

Query: 2   DFADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            FADL  L  + +  + + GY+  TP+Q  ++P +L   DV   A+TG+GKTA+F L +L
Sbjct: 3   SFADLHALPAEQLTNLNELGYLTMTPVQEASLPAILAGKDVRAQAKTGSGKTAAFGLGLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++    +    ++L+L PTRELA QVA+   +  +       L + G +PF  Q   L
Sbjct: 63  QRIDA---KQFNTQSLVLCPTRELADQVANELRRLARFLPNIKILTLCGGVPFSIQRDSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              A +++ TPGR+LDH N+  + + +++ LV+DEADRMLDMGF   I +I S +   RQ
Sbjct: 120 IHAAHIIVATPGRLLDHLNKQTVTLADVKTLVLDEADRMLDMGFFDDISDIISQMSTQRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  DE+ K+S    Q+P  IE+N+P       +  +  +          L Q L
Sbjct: 180 TLLFSATWPDEIAKISRKIQQDPVTIEINSPDELPAVEQQFYEISRYG----KLGLLQKL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S     + ++FCN K++  ++  +L +   SV A+HG+++Q+ R + L  F  G+ +++
Sbjct: 236 LSHHQPNSCVVFCNTKRDCQDVYEALTESNQSVLALHGDMEQKERDQTLIRFANGSCRVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+++ +  E +IHRIGRT RAG  G A +  A E+I   +A
Sbjct: 296 VATDVAARGLDIKALEMVINYELSHDPEVHIHRIGRTARAGESGLAISFCAPEEIPRANA 355

Query: 360 IEKLIEKKVDW 370
           +E+++  K+DW
Sbjct: 356 LEEMLNIKLDW 366


>gi|306838409|ref|ZP_07471254.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. NF
           2653]
 gi|306406549|gb|EFM62783.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. NF
           2653]
          Length = 455

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 151/421 (35%), Positives = 234/421 (55%), Gaps = 8/421 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 9   FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 68

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 69  IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 129 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 189 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEI---TQVVHPVPTKEKRRLLSAML 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 246 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 306 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 365

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E++   K+   +  +     P+ K    Q    R      +K+     R+    + + H
Sbjct: 366 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--GQRTEQAESRKAPAHKHRRPAQKAGEQH 423

Query: 420 I 420
            
Sbjct: 424 R 424


>gi|306843924|ref|ZP_07476519.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO1]
 gi|306275679|gb|EFM57403.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO1]
          Length = 455

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 151/421 (35%), Positives = 234/421 (55%), Gaps = 8/421 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 9   FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 68

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 69  IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 129 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 189 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEI---TQVVHPVPTKEKRRLLSAML 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 246 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 306 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 365

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E++   K+   +  +     P+ K    Q    R      +K+     R+    + + H
Sbjct: 366 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--GQRTEQAESRKAPAHKHRRPAQKAGEQH 423

Query: 420 I 420
            
Sbjct: 424 R 424


>gi|265984119|ref|ZP_06096854.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
 gi|264662711|gb|EEZ32972.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
          Length = 462

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 151/421 (35%), Positives = 234/421 (55%), Gaps = 8/421 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 16  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 76  IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 135

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 136 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 195

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 196 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEI---TQVVHPVPTKEKRRLLSAML 252

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 253 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 312

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 313 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 372

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E++   K+   +  +     P+ K    Q    R      +K+     R+    + + H
Sbjct: 373 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--GQRTEQAESRKAPAHKHRRPAQKAGEQH 430

Query: 420 I 420
            
Sbjct: 431 R 431


>gi|261325143|ref|ZP_05964340.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261752356|ref|ZP_05996065.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261301123|gb|EEY04620.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261742109|gb|EEY30035.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
          Length = 462

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 151/421 (35%), Positives = 234/421 (55%), Gaps = 8/421 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 16  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 76  IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 135

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 136 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 195

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 196 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEI---TQVVHPVPTKEKRRLLSAML 252

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 253 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 312

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 313 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 372

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E++   K+   +  +     P+ K    Q    R      +K+     R+    + + H
Sbjct: 373 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--GQRTEQAESRKAPAHKHRRPAQKAGEQH 430

Query: 420 I 420
            
Sbjct: 431 R 431


>gi|261218608|ref|ZP_05932889.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261321895|ref|ZP_05961092.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|260923697|gb|EEX90265.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261294585|gb|EEX98081.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
          Length = 462

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 151/421 (35%), Positives = 234/421 (55%), Gaps = 8/421 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 16  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 76  IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 135

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 136 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 195

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 196 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEI---TQVVHPVPTKEKRRLLSAML 252

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 253 TDADMRSVIVFTRTKHGADTVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 312

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 313 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 372

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E++   K+   +  +     P+ K    Q    R      +K+     R+    + + H
Sbjct: 373 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--GQRTEQAESRKAPAHKHRRPAQKAGEQH 430

Query: 420 I 420
            
Sbjct: 431 R 431


>gi|256369477|ref|YP_003106985.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
 gi|255999637|gb|ACU48036.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
          Length = 535

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 151/421 (35%), Positives = 234/421 (55%), Gaps = 8/421 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEI---TQVVHPVPTKEKRRLLSAML 325

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 326 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 445

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E++   K+   +  +     P+ K    Q    R      +K+     R+    + + H
Sbjct: 446 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--GQRTEQAESRKAPAHKHRRPAQKAGEQH 503

Query: 420 I 420
            
Sbjct: 504 R 504


>gi|254719124|ref|ZP_05180935.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
          Length = 535

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 151/421 (35%), Positives = 234/421 (55%), Gaps = 8/421 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEI---TQVVHPVPTKEKRRLLSAML 325

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 326 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 445

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E++   K+   +  +     P+ K    Q    R      +K+     R+    + + H
Sbjct: 446 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--GQRTEQAESRKAPAHKHRRPAQKAGEQH 503

Query: 420 I 420
            
Sbjct: 504 R 504


>gi|254714133|ref|ZP_05175944.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|254716809|ref|ZP_05178620.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
          Length = 535

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 151/421 (35%), Positives = 234/421 (55%), Gaps = 8/421 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEI---TQVVHPVPTKEKRRLLSAML 325

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 326 TDADMRSVIVFTRTKHGADTVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 445

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E++   K+   +  +     P+ K    Q    R      +K+     R+    + + H
Sbjct: 446 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--GQRTEQAESRKAPAHKHRRPAQKAGEQH 503

Query: 420 I 420
            
Sbjct: 504 R 504


>gi|148560232|ref|YP_001258986.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840]
 gi|161619002|ref|YP_001592889.1| DEAD/DEAH box helicase domain-containing protein [Brucella canis
           ATCC 23365]
 gi|254701799|ref|ZP_05163627.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|256061140|ref|ZP_05451294.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|148371489|gb|ABQ61468.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis
           ATCC 25840]
 gi|161335813|gb|ABX62118.1| DEAD/DEAH box helicase domain protein [Brucella canis ATCC 23365]
          Length = 535

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 151/421 (35%), Positives = 234/421 (55%), Gaps = 8/421 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEI---TQVVHPVPTKEKRRLLSAML 325

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 326 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 445

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E++   K+   +  +     P+ K    Q    R      +K+     R+    + + H
Sbjct: 446 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--GQRTEQAESRKAPAHKHRRPAQKAGEQH 503

Query: 420 I 420
            
Sbjct: 504 R 504


>gi|319943535|ref|ZP_08017817.1| DEAD/DEAH box helicase family protein [Lautropia mirabilis ATCC
           51599]
 gi|319743350|gb|EFV95755.1| DEAD/DEAH box helicase family protein [Lautropia mirabilis ATCC
           51599]
          Length = 872

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 134/450 (29%), Positives = 225/450 (50%), Gaps = 34/450 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGL   +V A+     + P+P+Q + IP++L  +D+   A TGTGKTA+F+LP L 
Sbjct: 149 SFAELGLIEPLVQALQRLDIIHPSPVQAQAIPVLLAGNDLVASAPTGTGKTAAFLLPALQ 208

Query: 62  ----------------------------ILEKGRARVRMPRTLILEPTRELAAQVADNFE 93
                                          +       P  L+L PTRELA QV     
Sbjct: 209 GVALNAQERAAEHHDAGDDDEDHRGKRGKGRRPARPAFGPSVLVLTPTRELAQQVTRTSH 268

Query: 94  KYGKNYNLTVALLIGG-IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVI 152
              +    T  + I G   +  Q + L    +VL+ TPGR++D    GK+ ++ +++LV+
Sbjct: 269 ALSRLLPRTSTVCITGGSSYFHQARALAMPYEVLVATPGRLIDQLENGKIDLSRLKMLVL 328

Query: 153 DEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS 212
           DEADRMLDMGF   +  I  ++P  RQT+ F+AT++ +++ +++  L++P+ + V     
Sbjct: 329 DEADRMLDMGFSEDVFRIAEMLPTERQTVCFTATVSHDVRNLADKLLKDPQWLTVERSEE 388

Query: 213 TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
               I+   V       +    L +   +   +   I+F   K+    L   L+ +GF+V
Sbjct: 389 ALTPIDDHVVYVDNPGHRG--QLLRACLNDTGLGQAIVFTATKRQAEELSEELQGEGFAV 446

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
            A+HG+++QR R + L+  ++G  Q+++A+D+AARG+D+  + HV N+++P  AE+Y+HR
Sbjct: 447 DALHGDMNQRERTRALNRLRQGECQVLIATDVAARGIDVSSLTHVINYELPRVAEDYVHR 506

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD--WLNGDLSSLNPPLEKIDIAQH 390
           IGRTGRAG  G+A + V +ED+  +  IE  + + +      G  +   P   K    + 
Sbjct: 507 IGRTGRAGASGQAISFVGREDVIPLRKIEHFLGRHIQVSEFPGLEAQFKPQPFKKKHKKK 566

Query: 391 NHARKNNPIPQ-KSTGFDRRKKNYSSQKSH 419
              R+    P+    G D R       +  
Sbjct: 567 EARREGYGKPRFGGRGRDDRHGGDREYRGR 596


>gi|73951336|ref|XP_850492.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX6
           (DEAD-box protein 6) (ATP-dependent RNA helicase p54)
           (Oncogene RCK) isoform 1 [Canis familiaris]
          Length = 441

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 112/377 (29%), Positives = 194/377 (51%), Gaps = 9/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++ +P+L 
Sbjct: 56  EFEDYCLKWELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYFIPLLE 115

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+    +    + +++ PTRE+A QV+    +  K+     V    GG        +L+
Sbjct: 116 RLDL---KKDNIQAMVIVPTREVALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 172

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 173 DTVHVVIATPGRILDVIKKGAAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 232

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK    F+ +  R           T++           ++  L    L 
Sbjct: 233 LLYSATFPLSVQK----FMNSHLRKPCEINLMEELTLKGVTQYYAYVTERQKVLCLNTLF 288

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   +   G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 289 SRLQINQSIIFCNSSQRV-ELLAKISLLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 347

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++  I
Sbjct: 348 CTDLFPRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKNI 407

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +  ++  
Sbjct: 408 EEQLGTEIKPIPSNIDK 424


>gi|157876834|ref|XP_001686759.1| DEAD box RNA helicase [Leishmania major strain Friedlin]
 gi|68129834|emb|CAJ09140.1| putative DEAD box RNA helicase [Leishmania major strain Friedlin]
          Length = 527

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 138/457 (30%), Positives = 242/457 (52%), Gaps = 6/457 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL  ++  A  DAG+  PT IQ  TI +  +  D+ G+AQTG+GKT ++ LP++ 
Sbjct: 54  TFQDLGLCQELCAACADAGWQHPTRIQASTITVFAEGRDLIGVAQTGSGKTGAYALPLVN 113

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   + +      L++ PTRELA QV   F   G++  L VA L+GG     Q  +L +
Sbjct: 114 WL-LAQRKTPYLSVLVMVPTRELAQQVTAQFVLLGRSVGLRVATLVGGADMVEQACELSK 172

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR+ DH  N     +  +  LV+DEAD+MLDM +   I  I   +P  R+T
Sbjct: 173 RPHVVVGTPGRVKDHLSNTKGFKLVKLHALVLDEADKMLDMNYEKEIDAILEQLPQNRRT 232

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT++ ++ ++ +  L++P  ++V+  ++T +T++  ++        +      L  
Sbjct: 233 MLFSATLSTKIDRLQKASLRDPVLLQVHRKNTTVDTLKQYYIFAPFA---QMLSYLHLFL 289

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++T  + +IFC     V  +  +L   G     + G +DQ +R   L+ FKEG +++++
Sbjct: 290 TKETGNHILIFCRSAALVHKITLTLRILGHRALPLMGRMDQSNRNIALTKFKEGKVRMLI 349

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A RGLDIP    V NF +P+  E+YIHR+GRT RAG  GKA  L+++ DI  +  I
Sbjct: 350 CTDVAQRGLDIPHTDVVVNFSLPDHVEDYIHRVGRTARAGAEGKAVNLISQYDIVLLQKI 409

Query: 361 EKLIEKK-VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           E+    K V++ +   S +   L++++ A+    R+     ++ +     ++  +++K  
Sbjct: 410 EQQTGVKCVEYPSLPESEVQLVLQRVEDAEQEAIREIREDAEERSLEKESRQLTTARKGK 469

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPK 456
               +++      +    + A     R +   F + K
Sbjct: 470 RDRGDADMGYDDAKHGTSDFATLRMRREHESIFEMTK 506


>gi|224090572|ref|XP_002187022.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Taeniopygia
           guttata]
          Length = 492

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 131/409 (32%), Positives = 213/409 (52%), Gaps = 15/409 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FAD  +   +   +  AGY KPTP+Q  +IP++L   D+   AQTG+GKTA+F++P++
Sbjct: 67  MSFADTNMCDTLTMNISKAGYWKPTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLVPVV 126

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             + +           + P  +I  PTREL  Q+     K+     +   ++ GG     
Sbjct: 127 AQMMRDGVTASAFKEQQEPECIITAPTRELIYQIFLEARKFVYGTCIRPVVIYGGTQTSY 186

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++E+G ++L  TPGR+LD   RGK+ ++N++ LV+DEADRMLDMGF   ++      
Sbjct: 187 LIRQVEQGCNILCATPGRLLDIIGRGKIGLHNVKYLVLDEADRMLDMGFGADMKKLVSFP 246

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +E+Q+++  FL+      V   +  A +     +   +QY K
Sbjct: 247 GMPQKEKRQTLMFSATFPEEVQRLAYEFLKTDFIFVVVGCAGGACSDVQQNILQVSQYFK 306

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  ++F + KK    +   L ++     +IHG+ +QR R   L +
Sbjct: 307 RDKLIE--ILHSTGNERTLVFVDTKKKADFIACFLCQENIPATSIHGDREQREREIALGD 364

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  GKA     
Sbjct: 365 FRSGRRPVLVATSVAARGLDIENVQHVINFDLPSTIEEYVHRIGRTGRCGNTGKAVAFFD 424

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE--KIDIAQHNHARKN 396
           K  D      + K++      +   L+ +    E  ++ +      R N
Sbjct: 425 KYSDGHLAQPLIKVLSDAQQKVPFWLTEVAFQTEGGRLPVNTQKKYRGN 473


>gi|114603672|ref|XP_001145017.1| PREDICTED: DEAD-box protein abstrakt isoform 2 [Pan troglodytes]
          Length = 625

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 120/389 (30%), Positives = 189/389 (48%), Gaps = 13/389 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 182 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 361

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S  P  +     +   +  + K  +NF ++     V      A       +       +
Sbjct: 362 FSCPPLPQGQRQ-TLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKE 420

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  
Sbjct: 421 EAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 480

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 481 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 540

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 541 KACDESVLMDLKALLLEAKQKVPPVLQVL 569


>gi|195431333|ref|XP_002063697.1| GK15774 [Drosophila willistoni]
 gi|194159782|gb|EDW74683.1| GK15774 [Drosophila willistoni]
          Length = 792

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 141/443 (31%), Positives = 230/443 (51%), Gaps = 13/443 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP + 
Sbjct: 160 SFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTLE 219

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L +      + R L+L PTREL AQV    ++  +  ++ V L IGG+  +AQ   L 
Sbjct: 220 RLLYRPLNNKTITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLR 279

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  D++I TPGR++DH         ++IE+L++DEADRMLD  F   ++ I +    TRQ
Sbjct: 280 QNPDIVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQ 339

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM+++++ ++   L  P ++ VN     A  +   F+            +   L
Sbjct: 340 TMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASL 399

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + ++F   KK    L   L         +HGN+ Q+ R++ L  FKE  I ++
Sbjct: 400 ICRTFHDHCMVFVQTKKQAHRLHILLGLLNVRAGELHGNLTQQQRLESLKKFKEEQIDVL 459

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  
Sbjct: 460 IATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKD 519

Query: 360 IEKLIEKK----------VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           I K  E            ++     L++L P ++ I + +    R+     Q+ +  +R+
Sbjct: 520 IIKNAESSVKNRIIPPEIIEKYRNKLTALEPEIQNI-LDEEQAERQIAKTEQQLSKTERK 578

Query: 410 KKNYSSQKSHIPLKESEKISKLQ 432
                 Q      +  ++  + +
Sbjct: 579 LLGQQGQDRRTWFQTKQQREQEK 601


>gi|115700917|ref|XP_001192557.1| PREDICTED: similar to RNA helicase p47 [Strongylocentrotus
           purpuratus]
 gi|115749264|ref|XP_788694.2| PREDICTED: similar to RNA helicase p47 [Strongylocentrotus
           purpuratus]
          Length = 538

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 113/367 (30%), Positives = 180/367 (49%), Gaps = 7/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  LS  ++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGKT ++ +P+L 
Sbjct: 150 EFEDYCLSRPLLMGIFEKGWEKPSPIQEESIPIALTGRDIMARAKNGTGKTGAYTIPVLE 209

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                       + L+L PTRELA Q +   ++  K+    V +  GG        +LE 
Sbjct: 210 KT---NTENNFIQALVLVPTRELALQTSQICKQLSKHTGHNVMVTTGGTSLRDDILRLED 266

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD   +    M+   +LV+DEAD++L   F   + +I S +P  RQ +
Sbjct: 267 PVHLVIATPGRILDLMKQSIAKMDKCSVLVLDEADKLLSKDFQNMLDDIISFLPQDRQIM 326

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    ++     F+                T++           K+       L S
Sbjct: 327 LYSATFPITVKN----FMDRYLTKAYEINLMQELTLKGITQYYAFVEEKQKVHCLNTLFS 382

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 383 KLQINQAIIFCNTTQRVELLAKKITELGYSCYYIHSRMQQEHRNRVFHDFRNGACRNLVC 442

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G  G A  ++  +D   +  IE
Sbjct: 443 TDLFTRGIDIQSVNVVINFDFPRVSETYLHRIGRSGRYGHMGLAINMITHDDRVPMYVIE 502

Query: 362 KLIEKKV 368
           K +  K+
Sbjct: 503 KELSTKI 509


>gi|94266535|ref|ZP_01290222.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93452836|gb|EAT03359.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 524

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 127/409 (31%), Positives = 205/409 (50%), Gaps = 6/409 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D  L+P+V+ A+   G+   TPIQ + +P  L  HD  G AQTGTGK+A+F++ ++  
Sbjct: 101 FHDFDLAPEVMRAIQALGFEYCTPIQAEILPPTLAGHDAFGKAQTGTGKSAAFLISIITR 160

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  P+ LIL PTRELA Q+  + E   +   L    + GG+ +E Q ++
Sbjct: 161 LLRQRADQPRALGFPQALILAPTRELAIQIHQDAEGLARFSGLRCVAVYGGVDYEKQRQR 220

Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            E+   D+LI TPGR+LD   +  L +  +++LVIDEADR+LDMGFIP ++ I    P  
Sbjct: 221 FEQEPVDLLIATPGRLLDFARQKVLSLKEVQVLVIDEADRLLDMGFIPDVRRIIQQTPEK 280

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            +      + T    ++S    Q   +             E      Y    ++   +  
Sbjct: 281 GKRQTLFFSAT-LTAQISSLADQWTHKPVTVEIEPEQVAAESVEQLVYLATREEKFTILY 339

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L     ++  I+FCN++     +   L +   S   + G + Q+ RM  L NFK G I+
Sbjct: 340 NLIVGRELERVIVFCNRRDVTRRVRDRLYRHDISCAMLSGEVGQQQRMNTLDNFKAGKIR 399

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A RGL +  + HV N+++P  AE+Y+HRIGRTGRAG+ G + +   +++  ++
Sbjct: 400 ILVATDVAGRGLHVEGISHVVNYNLPEDAEDYVHRIGRTGRAGQSGTSVSFADEDESFYL 459

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
            AIE+ +  K+  +      L P    +  A        +    KS G 
Sbjct: 460 PAIEEYLGNKLSCVYPPEELLAPLPAPVKKAPPVEKGAGDRSGGKSGGK 508


>gi|146323887|ref|XP_751498.2| ATP-dependent RNA helicase [Aspergillus fumigatus Af293]
 gi|91206842|sp|Q4WQM4|HAS1_ASPFU RecName: Full=ATP-dependent RNA helicase has1
 gi|129557486|gb|EAL89460.2| ATP-dependent RNA helicase, putative [Aspergillus fumigatus Af293]
 gi|159125568|gb|EDP50685.1| ATP-dependent RNA helicase, putative [Aspergillus fumigatus A1163]
          Length = 622

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 124/411 (30%), Positives = 202/411 (49%), Gaps = 13/411 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS K + A+ D G+   T IQ +TIP +L   DV G A+TG+GKT SF++P + 
Sbjct: 141 KFTELGLSEKTLKAINDMGFETMTEIQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVE 200

Query: 62  ILEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + R    +I+  PTRELA Q+     +  + ++ T  ++IGG    A+ +KL 
Sbjct: 201 MLSALRFKPRNGTGVIVVSPTRELALQIFGVARELCQYHSQTYGIVIGGANRRAEAEKLM 260

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-VPFTR 178
           +G ++LI TPGR +    N    +  N++ LVIDEADR+L++GF   ++ I  +     R
Sbjct: 261 KGVNLLIATPGRLLDHLQNTQGFVFKNLKTLVIDEADRILEVGFEDEMRQIVKILPSEER 320

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT T +++ ++   L+               T+E          + K  LL   
Sbjct: 321 QTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFLLLFS 380

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +    V      L      V  +HG   Q+ R      F       
Sbjct: 381 FLKRNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAKQGT 440

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R     G++   +   ++  +
Sbjct: 441 LICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTNAKGRSLMFLQPSEVGFL 500

Query: 358 DAIEKLIEKKVDWLNGDLS-----SLNPPLEKIDIAQHNHARKNNPIPQKS 403
             ++   E +V  +  +       ++   LEK+ I Q+ +  K+     +S
Sbjct: 501 KHLK---EARVPVVEFEFPANKIVNVQSQLEKL-IGQNYYLNKSAKEGYRS 547


>gi|50954624|ref|YP_061912.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951106|gb|AAT88807.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 491

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 127/365 (34%), Positives = 201/365 (55%), Gaps = 3/365 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L +   +V A+   G  +P PIQ +TIPL L   D+ G A+TGTGKT  F LP+ 
Sbjct: 1   MTFSELNIDQDMVDALAAKGITEPFPIQTQTIPLALTGQDIIGQAKTGTGKTFGFGLPI- 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I   G       + L++ PTRELA QV ++ E+   N   ++A + GG  +E Q  +L+
Sbjct: 60  -IQRLGADPEPGVQALVVVPTRELAVQVYEDLEQAASNRPTSIAAIYGGKAYEGQIAQLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGR+LD   +  L ++ +  +V+DEAD+MLD+GF+  I+ + +  P TR T
Sbjct: 119 AGAQVVVGTPGRLLDLAGQRLLNLSTVREMVLDEADKMLDLGFLSDIEKLFAQTPATRHT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +  ++  F          T     +   +     Y  +S     +   + 
Sbjct: 179 MLFSATMPGPIVALARRF-MTRPIHIRATDPDEGQIQANIKHLVYRAHSLDKDEVVARIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     +IF   K++   L   L  +GF+  A+HG+++Q  R + ++ FK G   +++
Sbjct: 238 QSEGRGKTVIFTRTKRSAAKLMEELNDRGFNAAAVHGDLNQEQRERAMAAFKAGKKDVLI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV HV N  +P+  + Y+HR GRTGRAG+ G A T V  ED+     I
Sbjct: 298 ATDVAARGIDVDDVTHVINHTIPDDEKTYLHRAGRTGRAGKSGIAVTFVDWEDLHKWALI 357

Query: 361 EKLIE 365
            + +E
Sbjct: 358 NRALE 362


>gi|296121937|ref|YP_003629715.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
 gi|296014277|gb|ADG67516.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
          Length = 395

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 130/369 (35%), Positives = 213/369 (57%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS   + AV   G+  P+PIQ   +PL L   DV G A+TG+GKTA+FVLP+L  
Sbjct: 8   FEDLGLSETTLAAVNKMGFATPSPIQAAFVPLALSGKDVIGQARTGSGKTAAFVLPILER 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++        P+ L+L PTREL+ Q+A+   +    + L     +GG     Q   L++G
Sbjct: 68  VDA---EKGYPQALVLTPTRELSQQIAEEASRLSLKHPLRSVCCVGGRNIRPQITDLKKG 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A ++I TPGRI+D   RG+L  + ++++V+DEADRMLD+GF P I+ I    P  RQTLL
Sbjct: 125 AQLVIGTPGRIIDLMQRGELDTSRLKMVVLDEADRMLDIGFRPDIERILRKCPTERQTLL 184

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+   + ++++ ++ +P+R++V+   + ++     F     Q  K   L++  + SQ
Sbjct: 185 LSATLPAPVARLAQKYMNDPERVDVSHIGADSQNSITQFYVPVDQDRKFRTLIR--VLSQ 242

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  +  ++F   K+    +      +   +  IHG++ Q  R  +LS F++G ++L++A+
Sbjct: 243 EKPQQVLVFTRTKRGAEEVYRKFSGRLPRIGFIHGDLSQNLREGVLSRFRDGRLRLLIAT 302

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH---GKAFTLVAKEDIKHIDA 359
           D+  RG+DI  + H+ N+DVP   ++Y+HRIGRTGR       G A T V +E+   +  
Sbjct: 303 DVMGRGIDISGISHIVNYDVPMDCDDYVHRIGRTGRLSSTEKIGSAITFVTREEGDQLTN 362

Query: 360 IEKLIEKKV 368
           IE  + K++
Sbjct: 363 IEIRVNKEL 371


>gi|154286470|ref|XP_001544030.1| hypothetical protein HCAG_01076 [Ajellomyces capsulatus NAm1]
 gi|150407671|gb|EDN03212.1| hypothetical protein HCAG_01076 [Ajellomyces capsulatus NAm1]
          Length = 721

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 116/442 (26%), Positives = 194/442 (43%), Gaps = 18/442 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL LS      +    +   T IQ + IP  L+  D+ G A+TG+GKT +F++P+L +
Sbjct: 51  FSDLPLSEPTADGLSACHFKSLTDIQARAIPHALKGRDILGAAKTGSGKTLAFLVPLLEL 110

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         L+L PTRELA Q+ +   K G+++  +  L+IGG   + + ++L +
Sbjct: 111 LYRKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHTFSAGLVIGGKGLQEEQERLGK 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +           N+I++LV+DEADR++DMGF   +  I   +P  RQT+
Sbjct: 171 MNILVCTPGRMLQHMDQTAAFDTNHIQLLVLDEADRIMDMGFQSTVDAIIDHLPKERQTM 230

Query: 182 LFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT T ++      +           T +S                 K   L   +  
Sbjct: 231 LFSATQTKKVSDLARLSLRDPEYVSVHETAASATPAKLQQNYIITPLPEKLDTLWSFIRS 290

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S  +         ++   V       + G  +  +HG   Q +R+ I   F       + 
Sbjct: 291 SLKSKIIVFFSSGKQVRFVYESFRHMRPGIPLLHLHGRQKQGARVDITKKFSAAKYSCLF 350

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD P V  V   D P  A+ YIHR GRT R  R+G+A   +   +      +
Sbjct: 351 ATDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFLEPSE--EAGML 408

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           ++L +KK+            P+EKI++         N +  ++  F      Y  QK+ I
Sbjct: 409 KRLEQKKI------------PIEKINVRSKKQQSIKNQL--QNMCFKDPSLKYLGQKAFI 454

Query: 421 PLKESEKISKLQQDIQENDADS 442
              +S  + + ++     D   
Sbjct: 455 SYVKSIHVQRDKEVFDVKDLPK 476


>gi|124268102|ref|YP_001022106.1| putative ATP-dependent RNA helicase [Methylibium petroleiphilum
           PM1]
 gi|124260877|gb|ABM95871.1| putative ATP-dependent RNA helicase [Methylibium petroleiphilum
           PM1]
          Length = 516

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 120/389 (30%), Positives = 196/389 (50%), Gaps = 23/389 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LGL+  ++ AV   G+  PT +Q + IP  L+  D    +QTG+GKTA+F+LP+L 
Sbjct: 75  NFESLGLAAPLLHAVTQLGFTAPTSVQEQAIPAALKGGDWMVSSQTGSGKTAAFLLPVLH 134

Query: 62  ILEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L       + RV  PR ++L PTRELA QV+ +     +     +       P     +
Sbjct: 135 RLLNAGAAEQTRVATPRAVVLCPTRELAQQVSADAIDLMRGVGEALRAEAKQHPLRDAAR 194

Query: 118 KLERGADVLICTPGRILD-----------------HFNRGKLLMNNIEILVIDEADRMLD 160
            L     V     G+ L                    +RG++ ++  ++LV+DEADRMLD
Sbjct: 195 GLRIATVVGGMPFGKQLFDLRGAQLVVATPGRLLDLHSRGQIRLDATQVLVVDEADRMLD 254

Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
           +GF   +  I        QT++FSAT    +  ++   +++P R+E+ T       I   
Sbjct: 255 LGFAEDLAAIADATAQRDQTMMFSATFAPRIMALASKLMRSPGRLELATAHDVHSDITQT 314

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
                    K+     +       +   ++F + + +   +  +L++QG S  A+HG + 
Sbjct: 315 LHWADNMGHKQAL--LEHWLRDAEVDQAVVFASTQVDTEAIAEALQQQGHSAVALHGAMP 372

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q  R + L N ++G ++++VA+D+AARGLD+P + HV NF +P +AE+Y+HRIGRTGRAG
Sbjct: 373 QAVRNRRLQNVRDGHVRVLVATDVAARGLDVPSISHVINFGLPMKAEDYVHRIGRTGRAG 432

Query: 341 RHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           R G A T+    +   I AIE    + ++
Sbjct: 433 RSGTAITIAEHRERGKIRAIEAFTRQPIE 461


>gi|289422183|ref|ZP_06424040.1| DEAD/DEAH box helicase [Peptostreptococcus anaerobius 653-L]
 gi|289157409|gb|EFD06017.1| DEAD/DEAH box helicase [Peptostreptococcus anaerobius 653-L]
          Length = 366

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 113/369 (30%), Positives = 202/369 (54%), Gaps = 6/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F D  +   +V A+   G  +PT +Q+++IPL++ + D+   + TGTGKT SF+LP++
Sbjct: 1   MNFKDFNIDENLVQALAKIGIKEPTRVQLESIPLIIDKRDLMIKSNTGTGKTLSFLLPLI 60

Query: 61  TILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             + K       +  P   ++    ++A  +  +         + +  + GG   +AQ  
Sbjct: 61  DKILKKDIDSILILAPTRELVLQINDMAVDIISHIGDENIKNTVNILPIYGGKDIKAQIN 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+   ++L+ TPGR+LDH NR  + ++  + +VIDEAD+ML MGF   I  I S +   
Sbjct: 121 KLKNSINILVATPGRLLDHINRNTISVSKFDSIVIDEADQMLLMGFKNEIDLIFSKIKKY 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
             T+  SAT+  +++K+   +  NP  + +   +   + IE  FV T  +   +    + 
Sbjct: 181 DHTIFLSATLDSKVKKLVYRYSNNPIEVNIEEDTHVPDLIEQEFVFTNDRQKFEDFCSKI 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      I+FC  K  V NL   L ++ ++   IH +I Q  R +I+ +F++  IQ
Sbjct: 241 DHDQPFM---AIVFCRTKARVDNLEEKLGQRKYNCKKIHSDISQAKRERIMKDFRDLKIQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++++DL+ARG+D+  + H++N+D P R E+YIHRIGR GR G+ GK+ + V ++++   
Sbjct: 298 FLISTDLSARGIDVNGISHIYNYDFPERPEDYIHRIGRAGRIGKDGKSCSFVTEKNMSVY 357

Query: 358 DAIEKLIEK 366
           D ++ ++EK
Sbjct: 358 DEVKAILEK 366


>gi|321459317|gb|EFX70372.1| hypothetical protein DAPPUDRAFT_328137 [Daphnia pulex]
          Length = 738

 Score =  146 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 142/406 (34%), Positives = 207/406 (50%), Gaps = 29/406 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L+  +   +    Y KPTP+Q   IP++L R DV   AQTG+GKTA+F++P+L 
Sbjct: 222 TFEDVKLTEIIRSNIALTRYDKPTPVQKYAIPIILARRDVMACAQTGSGKTAAFLVPILN 281

Query: 62  I-------------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
                               R + P  L+L PTRELA Q+ D  +K+     +   ++ G
Sbjct: 282 QLFERGPVVNQSAGQRSYGRRKQYPLALVLAPTRELATQIYDEAKKFAYRSRVRPCVVYG 341

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G     Q + LERG  +L+ TPGR++D   RGK+ + +   LV+DEADRMLDMGF P I+
Sbjct: 342 GADVRQQMQDLERGCHLLVATPGRLVDMLERGKIGLEHCNFLVLDEADRMLDMGFEPQIR 401

Query: 169 ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
                 T      RQTL+FSAT   E+Q ++ +FL+N   + V    ST+E I    V  
Sbjct: 402 RIVEQDTMPKTGDRQTLMFSATFPKEIQMLARDFLENYIFLAVGRVGSTSENITQKIVWV 461

Query: 225 YAQYSKKC------------ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
                +                 Q   +S +  +  ++F   K+    L   L + G+ V
Sbjct: 462 EEHDKRSFLLDLLNASGLNKFNSQVETESTEHEQLTLVFVETKRGADALEEFLYRDGYPV 521

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
            +IHG+  QR R   L  F+ G   ++VA+ +AARGLDIP V HV NFD+P+  E Y+HR
Sbjct: 522 TSIHGDRSQREREDALKRFRSGKTPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHR 581

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           IGRTGR G  G A +   +++   I  + +LI +    L   L  +
Sbjct: 582 IGRTGRMGNLGVATSFFNEKNRNLIRDLVELIIETKQELPSWLEGM 627


>gi|157119649|ref|XP_001653435.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108875244|gb|EAT39469.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 911

 Score =  146 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 140/421 (33%), Positives = 219/421 (52%), Gaps = 8/421 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
           DF +      V+  +   G+  PT IQ +  P+ L   D+ GIAQTG+GKT +++LP  +
Sbjct: 230 DFEEGNFPDFVMNEINKMGFPNPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYMLPGIV 289

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNK 117
               +K   R   P  L+L PTRELA Q+      +G +         + GG     Q +
Sbjct: 290 HIAHQKPLQRGEGPVVLVLAPTRELAQQIQTVVRDFGTHSKPLIRYTCIFGGALKGPQVR 349

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LERG +V+I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   
Sbjct: 350 DLERGVEVVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 409

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ L++SAT   E+Q ++E+FL +  +I + + + +A    H  V    +  K+  LL  
Sbjct: 410 RQVLMWSATWPKEVQALAEDFLHDYIQINIGSLNLSANHNIHQIVDVCEEGEKEGKLLSL 469

Query: 238 LLQSQDTMKNGIIFC-NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L +    + + II     KK V +L  ++ + G+   +IHG+  Q  R  +L +F+ G  
Sbjct: 470 LKEISSDVNSKIIIFVETKKKVEDLLKNIVRDGYGATSIHGDKSQSERDYVLQDFRHGKS 529

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+ DV +V NFD PN +E+YIHRIGRTGR   +G A+T     + + 
Sbjct: 530 TILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCSSYGTAYTFFTPGNGRQ 589

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              +  ++E+        L  L    ++    +   +R N      S G++R +  +   
Sbjct: 590 ARELLSVLEEAGQQPTAQLIDLA---KQAPGGKGGRSRYNVRGALTSGGYNRDQNGFGGN 646

Query: 417 K 417
           +
Sbjct: 647 R 647


>gi|225561576|gb|EEH09856.1| ATP-dependent RNA helicase DRS1 [Ajellomyces capsulatus G186AR]
          Length = 829

 Score =  146 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 149/449 (33%), Positives = 222/449 (49%), Gaps = 25/449 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L 
Sbjct: 306 SFQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILE 365

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++
Sbjct: 366 RLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKK 425

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 426 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFTDELNEILTTIPKSRQT 485

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+ + K+    L  P R+ V+    T  T+   FV       +K      +L 
Sbjct: 486 MLFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLIQEFVRLRPGREEKRLGYLIVLC 545

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   KK    +       G  V  +HG++ Q  R+K + +F++G +  ++
Sbjct: 546 KNIYKDRVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRIKSVESFRDGKVSFLL 605

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA- 359
           A+D+A+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A TL A+ D K + A 
Sbjct: 606 ATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKAA 665

Query: 360 -----------IEKLIE---------KKVDWLNGDLSSLNPPLEKIDIAQ--HNHARKNN 397
                      + +LIE         K  +        L    E+  +AQ      R +N
Sbjct: 666 VKTGRAQGAKIVSRLIETAEADKWAAKVEEMQEEVQEILREEKEEKQLAQAEMEVTRGSN 725

Query: 398 PIPQKSTGFDRRKKN-YSSQKSHIPLKES 425
            +  +     R K+  + S+K  +  K+ 
Sbjct: 726 LLNHEKEIMSRPKRTWFESEKEKLQAKQR 754


>gi|332297229|ref|YP_004439151.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM
           12168]
 gi|332180332|gb|AEE16020.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM
           12168]
          Length = 632

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 197/367 (53%), Gaps = 7/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           + F DLGL    + A+   G+  P+PIQ+  IP +L    +V   A+TGTGKTA+F LP+
Sbjct: 5   ISFEDLGLDEITLNAIALKGFEVPSPIQVLAIPRLLGGEANVIAKARTGTGKTAAFGLPL 64

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  + + +  VR    LIL PTRELA QV    +         +A + GG     Q + L
Sbjct: 65  VQTIREDKGHVRA---LILAPTRELALQVCKEIDSLTTGTYPRLAAVYGGQSMGEQLRAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG ++++ TPGR+ DH  R  L ++ I+  ++DEAD MLDMGFI  I+ I +      +
Sbjct: 122 KRGVEIVVGTPGRVQDHIERKSLDLSQIDYFILDEADEMLDMGFIDDIEAIFAKANPESR 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM   + K++  F+ + + +E  T     E         +             L
Sbjct: 182 ILLFSATMPQPILKIASRFMGDYEIVEEETSP---EEPVLTEQKYWIVRESDKIEALVRL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   G++F   K +   +   L+++G+   A+HG+I Q  R KIL  F+    +++
Sbjct: 239 IDISPDFYGLVFTQTKADADMITRQLDERGYEAAALHGDIPQAQREKILYRFRNKKTRIL 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV N+ +P     Y+HRIGRTGRAG  G AFTLV  E+ + ++ 
Sbjct: 299 VATDVAARGIDIEGLTHVVNYALPFDGPTYVHRIGRTGRAGAKGLAFTLVRPEERRKLEY 358

Query: 360 IEKLIEK 366
           ++  + K
Sbjct: 359 LKAAVRK 365


>gi|328704199|ref|XP_001943651.2| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
           [Acyrthosiphon pisum]
          Length = 771

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 138/454 (30%), Positives = 223/454 (49%), Gaps = 21/454 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + +S  ++ A+    YV PTPIQ   IP+ L   D+CG A TGTGKTA+++LP+L 
Sbjct: 166 SFYQMNISRPLMKAISALNYVHPTPIQAAAIPVALLGRDICGCAATGTGKTAAYMLPILE 225

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L            + +L PTREL  QV    ++  +  ++ V L +GG+  + Q   L 
Sbjct: 226 RLLYRPKGFTPITRVLVLVPTRELGVQVYQVTKQLAQFTSVEVGLSVGGLELKVQESILR 285

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  DV+I TPGR +    N     + ++E+LV+DEADRMLD  F   ++ I ++   TRQ
Sbjct: 286 KNPDVVIATPGRLLDHLQNTPSFSLADLEVLVLDEADRMLDENFADQMKEIINMCARTRQ 345

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTD +  ++   L  P +I V++ +  A  +   FV       +        L
Sbjct: 346 TMLFSATMTDAVNDLATVSLSKPVKIFVDSNTDVAFNLRQEFVRLRQGKEQDRDATLAAL 405

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + +IF   K +   +   L   G     +HGN+ Q  R++ L  FK+  + L+
Sbjct: 406 VCRTFRDHTMIFVRTKADAHRVKILLGLFGLKAGELHGNLSQPQRLEALRQFKDEELDLL 465

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  V  V N+ +P   E+YIHR+GRT RAGR G + ++ +++D K +  
Sbjct: 466 IATDVAARGLDIRGVKAVINYTMPPTVEHYIHRVGRTARAGRSGVSVSIASEQDRKVLKE 525

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ-------------------HNHARKNNPIP 400
           + +  +  V      +  L+   E++D  +                      A K   + 
Sbjct: 526 VIRKAKNPVKNRVIPIEILDKYKERVDSLRNEVKCIMTEEYEERQMNRTEEFAEKTEKMA 585

Query: 401 QKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQD 434
           + S G   +KK+   +      KE  +  K  ++
Sbjct: 586 KTSIGTLIKKKDEKKRDWFQTQKERGEAKKRSRE 619


>gi|307132128|ref|YP_003884144.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
 gi|306529657|gb|ADM99587.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
          Length = 450

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 143/443 (32%), Positives = 222/443 (50%), Gaps = 14/443 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++  L   ++ A+ D G+ +PT IQ + IP  ++  DV G A TGTGKTA+++LP + 
Sbjct: 5   NFSEFDLDDSLLDALRDMGFSRPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD       + +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARAMAAHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT
Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT   D +Q  +E  L +P  +E        + I   +        K    L   L
Sbjct: 185 MLFSATLEGDAIQDFAERLLNDPIEVEAEPSRRERKKILQWYYRADDVQHKTA--LLSHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  +   I+F  +++ V  L   L   G   C + G + Q  R + +    EG ++++
Sbjct: 243 LKQPDVTRSIVFVRKRERVHELVDWLRSAGIESCYLEGEMVQAKRNEAIKRLSEGRVKVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI DV HVFNFD+P  ++ Y+HRIGRTGRAGR G A +LV   D   ++ 
Sbjct: 303 VATDVAARGLDILDVSHVFNFDLPRTSDVYLHRIGRTGRAGRKGCAISLVEAHDYLLLEK 362

Query: 360 IEKLIEKK-----VDWLNGDLSSLNP-----PLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           I + + +      VD L     + +P     P +K+   +    +K     +       R
Sbjct: 363 IGRYLNEPLKARVVDELRPATRAPSPKTTGKPSKKVLAKRKELKQKEKEKQKAKVKVRHR 422

Query: 410 KKNYSSQKSHIPLKESEKISKLQ 432
                 ++     K   +  K +
Sbjct: 423 DSKNIGKRRQPSAKAPAETQKEK 445


>gi|261755014|ref|ZP_05998723.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|261744767|gb|EEY32693.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
          Length = 517

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 151/420 (35%), Positives = 234/420 (55%), Gaps = 8/420 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 103 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 162

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 163 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 222

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 223 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 282

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 283 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEI---TQVVHPVPTKEKRRLLSAML 339

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 340 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 399

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 400 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 459

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E++   K+   +  +     P+ K    Q    R      +K+     R+    + + H
Sbjct: 460 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--GQRTEQAESRKAPAHKHRRPAQKAGEQH 517


>gi|254704340|ref|ZP_05166168.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|260566411|ref|ZP_05836881.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
 gi|260155929|gb|EEW91009.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
          Length = 503

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 151/420 (35%), Positives = 234/420 (55%), Gaps = 8/420 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEI---TQVVHPVPTKEKRRLLSAML 325

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 326 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 445

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E++   K+   +  +     P+ K    Q    R      +K+     R+    + + H
Sbjct: 446 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--GQRTEQAESRKAPAHKHRRPAQKAGEQH 503


>gi|221197472|ref|ZP_03570519.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2M]
 gi|221204145|ref|ZP_03577163.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2]
 gi|221176311|gb|EEE08740.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2]
 gi|221184026|gb|EEE16426.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2M]
          Length = 464

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 149/422 (35%), Positives = 219/422 (51%), Gaps = 24/422 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P ++  +   GYV  TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L+ 
Sbjct: 9   FSALPLTPAMLANLEQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + +IL PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 69  LDA---RRFDVQAMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLQLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ F     R                    Y     +      +L +
Sbjct: 186 LFSATYPDGIAKLSQQF----LRNPKEVKLEERHDDSKIRQRFYEVTETERLHAVGMLLN 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 242 HYRPVSTIAFCNTKQQCRDLIDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQAGWALSLASMDEMGRVGAIE 361

Query: 362 KLIEKKVDW------LNGDLSSLNPPLEKIDIAQHNHARKNNPIP-------QKSTGFDR 408
           +  ++ V+W           + L PP+E + I      RK+   P           GFD 
Sbjct: 362 QAQKRDVEWRPLSELTPASDAPLLPPMETLQIL---GGRKDKIRPGDVLGALTGDAGFDG 418

Query: 409 RK 410
           ++
Sbjct: 419 KQ 420


>gi|47085711|ref|NP_998142.1| ATP-dependent RNA helicase DDX39 [Danio rerio]
 gi|28278325|gb|AAH44169.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39b [Danio rerio]
 gi|45709039|gb|AAH67555.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39b [Danio rerio]
 gi|118763876|gb|AAI28805.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39b [Danio rerio]
 gi|169154009|emb|CAQ13699.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39b [Danio rerio]
 gi|182889946|gb|AAI65847.1| Ddx39b protein [Danio rerio]
          Length = 427

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 164/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY     + V      I  +    K    
Sbjct: 106 IEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMSIKKDEDVLKKSCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L N    ++ +    +  +     +Q+I  L P  +Q ++
Sbjct: 166 HIVVGTPGRILALVRNKTLNLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYCKLKDNEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  V L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCVALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKILNDVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRFEVNVAELPEEID 418


>gi|307245436|ref|ZP_07527524.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307247549|ref|ZP_07529593.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307254390|ref|ZP_07536228.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256597|ref|ZP_07538378.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307258849|ref|ZP_07540581.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307261031|ref|ZP_07542713.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|307263212|ref|ZP_07544832.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|306853777|gb|EFM85994.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306855914|gb|EFM88073.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306862689|gb|EFM94645.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865007|gb|EFM96909.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306867200|gb|EFM99056.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306869333|gb|EFN01128.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306871429|gb|EFN03153.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 593

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 129/350 (36%), Positives = 209/350 (59%), Gaps = 7/350 (2%)

Query: 23  KPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTR 82
            P+PIQ +TIP +L   DV G+AQTG+GKTA+F LP+L  ++      R P+ L++ PTR
Sbjct: 2   TPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLLAQIDPT---KRHPQMLVMAPTR 58

Query: 83  ELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLERGADVLICTPGRILDHFNRGK 141
           ELA QVAD  E++ KN      + + G   ++ Q + L++G+ V++ TPGRILDH  RG 
Sbjct: 59  ELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRALKQGSQVVVGTPGRILDHIRRGT 118

Query: 142 LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQN 201
           L ++ ++ +V+DEAD ML MGFI  ++ + + +P   QT LFSATM + +++++  F+Q+
Sbjct: 119 LDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRITRRFMQD 178

Query: 202 PKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNL 261
           P+ +++     +A  I   +                     +     IIF   K   +++
Sbjct: 179 PQEVKIQATQRSAPDITQSYWLVNGFRKNDA---LLRFLEVEEFDAAIIFTRTKTGTIDI 235

Query: 262 CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321
               E+ G+   A++G++ Q++R + L   K G + ++VA+D+AARG+DI  +  V NFD
Sbjct: 236 TELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAARGIDIERISLVVNFD 295

Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
           +P  AE+Y+HRIGRTGRAGR G+A   V   + + +  IE L++K +D +
Sbjct: 296 IPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKPIDEV 345


>gi|319760253|ref|YP_004124191.1| cold-shock DEAD box protein A [Candidatus Blochmannia vafer str.
           BVAF]
 gi|318038967|gb|ADV33517.1| cold-shock DEAD box protein A [Candidatus Blochmannia vafer str.
           BVAF]
          Length = 617

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 126/361 (34%), Positives = 199/361 (55%), Gaps = 3/361 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++LGL+  ++  +   GY KP PIQ K IPL+L+ HD+ GIA TG+GKTA+F+LP+L 
Sbjct: 7   SFSNLGLNACLISMLKKVGYKKPLPIQEKCIPLLLKGHDILGIAHTGSGKTAAFLLPLLQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +    A  +    +I               +       ++VA+L GG  +  Q   L +
Sbjct: 67  SININTASTQ--GLIITPTRELAIQIGQVCIDFIKYISGISVAILYGGQNYNIQLNDLRK 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+LDH NRG   ++ ++IL+IDEAD ML MGFI  ++ I + VP  RQT 
Sbjct: 125 NPHIIVGTPGRLLDHLNRGTANISKLKILIIDEADEMLRMGFIEDVKLIVNKVPVDRQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT  + ++K+S  F+  PK + +         I+  F                    
Sbjct: 185 CFSATFPENIKKISYKFMNTPKEVCICNIDIHPPDIKQNFWLVKRGM-ITKHEALIRFLE 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I+F   K   + +   LE  G++  A++G+++Q  R K +S  K GT+ ++++
Sbjct: 244 IEDYDAAIVFVRTKSETLRISEILENFGYNSAALNGDMNQSIRQKTVSRLKYGTLDILIS 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N+DVPN   +YIHRIGRTGRAGR GK+   V +++   +++I+
Sbjct: 304 TDVAARGLDIQRISLVINYDVPNNYNSYIHRIGRTGRAGRIGKSLLFVERQEYNLLNSIK 363

Query: 362 K 362
           +
Sbjct: 364 R 364


>gi|195475588|ref|XP_002090066.1| GE20836 [Drosophila yakuba]
 gi|194176167|gb|EDW89778.1| GE20836 [Drosophila yakuba]
          Length = 1464

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 121/382 (31%), Positives = 203/382 (53%), Gaps = 9/382 (2%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +F    L   +   V  +GY  PTPIQ  +IP++    D+   AQTG+GKTA+F++P+L+
Sbjct: 1049 NFEHAELRDIIRENVTKSGYTVPTPIQKVSIPVIAAGRDLMACAQTGSGKTAAFLVPILS 1108

Query: 62   ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L      +    P+ +I+ PTRELA Q+     K+     L ++++ GG  F+ QN+ +
Sbjct: 1109 KLLDDPQDLEFGKPQAVIVSPTRELAIQIFSEARKFAFESYLKISIVYGGTSFKHQNECI 1168

Query: 120  ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             +G  VLI TPGR+LD  +R  +   +   +V+DEADRMLDMGF   ++   +      +
Sbjct: 1169 TKGCHVLIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSESMRKFMNHQTMRPE 1228

Query: 180  TL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
                +FSAT  +E+Q+++  FL++   + +                T  + +K     + 
Sbjct: 1229 HQTLMFSATFPEEIQRLAGEFLKSYVFVTIGVVGGACSD----VQQTIYEVNKFAKRSKL 1284

Query: 238  LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   ++     I+F   K+    L   L +  F   +IHG+  Q  R + L +FK G+++
Sbjct: 1285 MEILREQADGTIVFVETKRGADFLASFLSETEFPTTSIHGDRLQSQREQALRDFKNGSMK 1344

Query: 298  LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKH 356
            +++A+ +AARGLDI ++ HV NFD+PN  ++Y+HRIGRTGR G +G+A +    + D   
Sbjct: 1345 VIIATSVAARGLDIKNIKHVVNFDMPNNIDDYVHRIGRTGRVGNNGRATSFFDPDQDQAL 1404

Query: 357  IDAIEKLIEKKVDWLNGDLSSL 378
               + K++E     +   L  L
Sbjct: 1405 AGDLIKILEGSGQTVPEFLRDL 1426


>gi|301771296|ref|XP_002921018.1| PREDICTED: ATP-dependent RNA helicase DDX39-like [Ailuropoda
           melanoleuca]
          Length = 427

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 166/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY  +  ++V      I  + +  K    
Sbjct: 106 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    NR   L N    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 166 HVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRFEVNVAELPEEID 418


>gi|281353060|gb|EFB28644.1| hypothetical protein PANDA_009904 [Ailuropoda melanoleuca]
          Length = 422

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 166/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY  +  ++V      I  + +  K    
Sbjct: 106 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    NR   L N    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 166 HVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRFEVNVAELPEEID 418


>gi|73986746|ref|XP_533895.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
           isoform 1 [Canis familiaris]
          Length = 427

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 166/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY  +  ++V      I  + +  K    
Sbjct: 106 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    NR   L N    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 166 HVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRFEVNVAELPEEID 418


>gi|331006961|ref|ZP_08330204.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium IMCC1989]
 gi|330419223|gb|EGG93646.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium IMCC1989]
          Length = 451

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 139/374 (37%), Positives = 218/374 (58%), Gaps = 10/374 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F DLGL   ++ A+ D G+   +PIQ +++P  L  HD+ G AQTGTGKTA+F+  ++  
Sbjct: 71  FHDLGLEAPLMHAIADLGFEYCSPIQAQSLPNTLNGHDMLGKAQTGTGKTAAFLTAIIDD 130

Query: 62  ---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK- 117
                 +G       R LI+ PTREL  Q+A++ +   K+ +LTV  L+GG+ +  Q + 
Sbjct: 131 LLKNPLEGERYAGEARALIIAPTRELVVQIAEDAKLLVKHTDLTVHTLVGGMDYTKQQQG 190

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN--ITSLVP 175
              +  D+L+ TPGR+LD  +   + ++ +EILV+DEADRMLDMGFIP ++     +   
Sbjct: 191 VRNKFVDILVATPGRLLDFASNKDVHLDQVEILVLDEADRMLDMGFIPQVRRIVRLTPRC 250

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTL FSAT TD++ +++E + QNP  +E+   S   +T+E       A    K    
Sbjct: 251 ENRQTLFFSATFTDDVMRLAEQWTQNPCSVEIEPESVATDTVEQHVYLVAASEKYKLLTN 310

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 Q  +++ I+F N++     L   L K GFS   + G + Q  R+K L  FK G 
Sbjct: 311 LA---RQPDVESLIVFGNRRDECRRLHEQLVKHGFSAGLLSGEVAQNKRIKTLDGFKSGK 367

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I ++ HV NF +P   E+Y+HRIGRTGRAG+ G + +   ++D  
Sbjct: 368 IKILVATDVAGRGIHINNISHVVNFSLPEEPEDYVHRIGRTGRAGKKGVSISFACEDDAF 427

Query: 356 HIDAIEKLIEKKVD 369
            +  +EKL+ +K++
Sbjct: 428 LLPELEKLLGQKLE 441


>gi|328697427|ref|XP_001946984.2| PREDICTED: ATP-dependent RNA helicase p62-like isoform 1
           [Acyrthosiphon pisum]
          Length = 551

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 119/379 (31%), Positives = 195/379 (51%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--L 60
           F +      V+  + + G+ +PTPIQ +  P+ +   ++ G+AQTG+GKT  + LP    
Sbjct: 139 FKEANFPDYVMTVIRNEGFTEPTPIQAQGWPIAMSGKNMVGVAQTGSGKTLGYTLPAVVH 198

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              ++   +   P  L+L PTRELA Q+      + ++  L    + GG P   Q + L 
Sbjct: 199 INNQEPLKKGDGPIALVLAPTRELAQQIQKVAGLFNQSTYLRSTCIYGGAPKSHQARDLM 258

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G +++I TPGR+LD        +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 259 NGVEIVIATPGRLLDFLESRATNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRPDRQV 318

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLL 239
           L++SAT   E+QK++ +FL +  ++ V + + +A       V    ++ K+   +     
Sbjct: 319 LMWSATWPKEVQKLANDFLSDYIQLNVGSLTLSANHNILQNVDVCQEHEKEDKLMDLLQD 378

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       IIF   K+ V  +   +   G     IHG+  Q  R  +L  F+ G   ++
Sbjct: 379 IANMEENKTIIFAETKRKVDTITRKITNMGARAVGIHGDKSQSERDHVLKQFRGGRANIL 438

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV  V NFD PN +E+YIHRIGRTGR+ + G ++      + K    
Sbjct: 439 VATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSSQKGTSYAFFTHSNSKQAKD 498

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +  ++ +    ++  L+++
Sbjct: 499 LVAVLTEANQRIDPKLAAM 517


>gi|242808610|ref|XP_002485202.1| ATP dependent RNA helicase (Dbp1), putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218715827|gb|EED15249.1| ATP dependent RNA helicase (Dbp1), putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 680

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 136/397 (34%), Positives = 208/397 (52%), Gaps = 22/397 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+  
Sbjct: 190 TFTNPPLDDHLIANIALARYTTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILS 249

Query: 60  --------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105
                               GR R   P +LIL PTREL +Q+ D   K+     +   +
Sbjct: 250 QAFQTGPSAAPAPAAGGNFYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCV 309

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P
Sbjct: 310 VYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEP 369

Query: 166 YIQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
            I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I    
Sbjct: 370 QIRRIVEGEDMPQVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQRI 429

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
                   +       +L +  T    +IF   K+   +LC  L  Q F   AIHG+  Q
Sbjct: 430 EYVEDHDKRSVL--LDILHTHGTTGLTLIFVETKRMADSLCDFLINQNFPATAIHGDRTQ 487

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG 
Sbjct: 488 RERERALEMFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGN 547

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            G A     + +   +  +  L+++    +   L ++
Sbjct: 548 TGIATAFFNRGNRGVVRDLIDLLKEAHQDVPSFLENI 584


>gi|328697425|ref|XP_003240334.1| PREDICTED: ATP-dependent RNA helicase p62-like isoform 2
           [Acyrthosiphon pisum]
          Length = 516

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 119/379 (31%), Positives = 195/379 (51%), Gaps = 3/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--L 60
           F +      V+  + + G+ +PTPIQ +  P+ +   ++ G+AQTG+GKT  + LP    
Sbjct: 104 FKEANFPDYVMTVIRNEGFTEPTPIQAQGWPIAMSGKNMVGVAQTGSGKTLGYTLPAVVH 163

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              ++   +   P  L+L PTRELA Q+      + ++  L    + GG P   Q + L 
Sbjct: 164 INNQEPLKKGDGPIALVLAPTRELAQQIQKVAGLFNQSTYLRSTCIYGGAPKSHQARDLM 223

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G +++I TPGR+LD        +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 224 NGVEIVIATPGRLLDFLESRATNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRPDRQV 283

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLL 239
           L++SAT   E+QK++ +FL +  ++ V + + +A       V    ++ K+   +     
Sbjct: 284 LMWSATWPKEVQKLANDFLSDYIQLNVGSLTLSANHNILQNVDVCQEHEKEDKLMDLLQD 343

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       IIF   K+ V  +   +   G     IHG+  Q  R  +L  F+ G   ++
Sbjct: 344 IANMEENKTIIFAETKRKVDTITRKITNMGARAVGIHGDKSQSERDHVLKQFRGGRANIL 403

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ DV  V NFD PN +E+YIHRIGRTGR+ + G ++      + K    
Sbjct: 404 VATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSSQKGTSYAFFTHSNSKQAKD 463

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +  ++ +    ++  L+++
Sbjct: 464 LVAVLTEANQRIDPKLAAM 482


>gi|325285240|ref|YP_004261030.1| DEAD/DEAH box helicase domain-containing protein [Cellulophaga
           lytica DSM 7489]
 gi|324320694|gb|ADY28159.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
           7489]
          Length = 602

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 123/378 (32%), Positives = 214/378 (56%), Gaps = 10/378 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F  LGL   ++ A++D G+  P+ +Q K IP++L +  D+  +AQTGTGKTA+F  P++
Sbjct: 3   KFEALGLDKSLLDAIVDLGFESPSEVQEKAIPILLNEDTDLVALAQTGTGKTAAFGFPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             ++      R  + LIL PTREL  Q+ +  + Y K       + I G      Q  ++
Sbjct: 63  QKIDSS---SRTTQGLILSPTRELCLQITNELKAYSKYEKGLNVVAIYGGASITDQANQI 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGA +++ TPGRI D  +RG + ++ ++  V+DEAD ML+MGF   I++I S  P  + 
Sbjct: 120 RRGAQIVVATPGRIKDMISRGMVNISKLDYCVLDEADEMLNMGFYEDIKDILSNTPDEKF 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM  E+  +++ F+ NP+ I V + +             Y    +      + L
Sbjct: 180 TWLFSATMPREVSTIAKKFMHNPQEITVGSKN---AGATTVQHEYYVVGGRDRYPALKRL 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     ++FC  K++   +   L + G++  A+HG++ Q  R  +++ F++  IQ++
Sbjct: 237 ADTNPDIFSVVFCRTKRDTQRVAEKLIEDGYNAGALHGDLSQNQRDLVMNAFRKKQIQML 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ D+ HV N+ +P+  E Y HR GRTGRAG+ G +  +V + +++ I A
Sbjct: 297 VATDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGVSMVIVTRSELRKIKA 356

Query: 360 IEKLIEKKVDWLNGDLSS 377
           +E+ ++   ++L+  + +
Sbjct: 357 LERKLQT--EFLSKKIPT 372


>gi|255582203|ref|XP_002531894.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223528461|gb|EEF30493.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 789

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 133/403 (33%), Positives = 224/403 (55%), Gaps = 6/403 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LSP V   V   GY  PTPIQ KT+P++L   DV  +A+TG+GKTA+F++PML  
Sbjct: 29  FESLNLSPNVYNGVKRKGYRVPTPIQRKTMPIILSGSDVVAMARTGSGKTAAFLIPMLER 88

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++  ++    R LIL PTR+LA Q     ++ G+  +L  +LL+GG   E+Q ++L + 
Sbjct: 89  LKQHVSQGGA-RALILSPTRDLALQTLKFTKELGRFTDLRASLLVGGDSMESQFEELAQN 147

Query: 123 ADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR++ H      + +  +E +V DEAD +  MGF   +  I + +   RQTL
Sbjct: 148 PDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTL 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L + ++  L++P+ + ++  +  +  ++  F  T  Q  K  ALL  + + 
Sbjct: 208 LFSATLPSALAEFAKAGLRDPQLVRLDVDTKISPDLKTVF-FTLRQEEKYAALLYLVREH 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  +IF + K +V  L     ++G      +G++DQ +R   +S F+     L++ 
Sbjct: 267 ISSDQQTLIFVSTKHHVEFLNILFREEGIEPSVCYGDMDQDARKIHVSRFRAQKTMLLIV 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP + +V N+D P + + ++HR+GR  RAGR G AF+ V  ED+ ++  + 
Sbjct: 327 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMPYLLDLH 386

Query: 362 KLIEKKVDWLNGD---LSSLNPPLEKIDIAQHNHARKNNPIPQ 401
             + K +     +   +  ++  + KI+ A  N        PQ
Sbjct: 387 LFLSKPIRAAPTEEEVVKDMDRVMMKINEAVANGETIYGRFPQ 429


>gi|153009469|ref|YP_001370684.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561357|gb|ABS14855.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 464

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 154/448 (34%), Positives = 240/448 (53%), Gaps = 7/448 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ++ IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 17  FAALGVTGILLKGVEAAGMTEPKPIQLQAIPHQLEGRDILGIAQTGSGKTAAFSLPILQK 76

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 77  IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKHAHISTALVLGGVSKLSQIKRIA 136

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 137 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHSDRQT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++ + L +P R+EV    +TA  I       +  ++K+   L   L 
Sbjct: 197 ALFSATMPKEIASLAGSLLHDPVRVEVAPQGTTAAEI---TQVVHPVHTKEKRRLLSALL 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               M++ I+F   K     +   LE+ G+ V AIHGN  Q +R + L+ F++G++++++
Sbjct: 254 GDKAMRSVIVFTRTKHGADAVVRHLERDGYEVAAIHGNKSQNARQRALNGFRDGSLRILI 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKHIDA 359
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 314 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPAAEESKLRA 373

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E++   K+   +  +  L P       A     +K       +    RR    S     
Sbjct: 374 VERVTRNKLPIKDAPVE-LAPAPAPRAAAPGERPQKTQHRKGGTAQKPRRAAPKSGDHRT 432

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRG 447
                 E   K ++  +    ++ G  G
Sbjct: 433 GGHAAGEAAPKAKRPFRRKRRNANGNGG 460


>gi|283786193|ref|YP_003366058.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
 gi|282949647|emb|CBG89266.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
          Length = 444

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 150/441 (34%), Positives = 226/441 (51%), Gaps = 6/441 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP + 
Sbjct: 5   TFSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+  E  K     L       V+   ST E  +       A   +    L + L 
Sbjct: 185 MLFSATLEGEAIKDFAERLLEDPVE-VSASPSTRERKKIHQWYYRADNYEHKFELLKHLL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            QD     I+F  +++ V  L   L   G S C + G + Q  R + +    +G + ++V
Sbjct: 244 KQDDATRTIVFVRKRERVHELAEQLRLAGISNCYLEGEMAQIKRNEGIKRLTDGRVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DIPDV HV NFD+P   + Y+HRIGRTGRAGR G A +LV   D   +  I
Sbjct: 304 ATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLMLKI 363

Query: 361 EKLIEKKVDWLNGDL--SSLNPPLEKIDI--AQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            + IE+ +     D    +   P EK+    ++   A++     +K     R KK +   
Sbjct: 364 GRYIEEPLKARVIDELRPTTRAPSEKMTGKPSKKVLAKRAEKKKEKQKDAPRVKKRHRDT 423

Query: 417 KSHIPLKESEKISKLQQDIQE 437
           K+    ++    S   Q  +E
Sbjct: 424 KNIGKRRKPSGTSVSPQSGEE 444


>gi|261749520|ref|YP_003257206.1| ATP-dependent RNA helicase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497613|gb|ACX84063.1| ATP-dependent RNA helicase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 542

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 136/421 (32%), Positives = 229/421 (54%), Gaps = 18/421 (4%)

Query: 2   DFADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPM 59
            F D   L+ K++ A+ D G   PTPIQ K IP +L    D+  +AQTGTGKTA+F LP+
Sbjct: 3   TFKDYNFLNDKIIQALEDLGIKTPTPIQKKVIPYLLKSGKDLIALAQTGTGKTAAFGLPI 62

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKK 118
           +  +       R P+ LIL PTREL  Q+  +  ++ +    + +  L GG+  E Q   
Sbjct: 63  IQKINL---EFRFPQALILCPTRELCIQITRDLSRFSRYISLIKIIPLYGGVSIENQILS 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L++   +++ TPGRI+D   R KL +++I+ LV+DEAD ML+MGF   + +I   +P  R
Sbjct: 120 LQKRTHIIVGTPGRIIDLIERKKLHLSDIKYLVLDEADEMLNMGFKEELDSIIIKLPKKR 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+LLFSATM+  +  ++ ++L +P  I     +  ++ + H +     Q      L  + 
Sbjct: 180 QSLLFSATMSKYMNGIAHDYLIDPIEIITGKRNFASDDVRHIYYIVSNQNK---YLALKR 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   +    GIIFC  +K    +  SL + G++  A++G++ Q  R  +++ F+   +Q 
Sbjct: 237 IVDINPDIYGIIFCKTRKETREIAESLIQDGYNADALYGDLSQSQRESVMNRFRNRILQF 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ DV HV N+++P+ +E Y+HR GRTGRAG  G +  ++   + +++ 
Sbjct: 297 LVATDIAARGIDVNDVTHVINYNIPDESEIYVHRSGRTGRAGNTGISVCIIHSRETRNLR 356

Query: 359 AIEKLIEKKVDWL---------NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             EK I K  + +            L      ++KI + + +       I ++   FDR 
Sbjct: 357 EFEKKIGKSFERIMIPSGEEVCEKKLFHFIEKVKKIVVDEQSMKTFLPEIQKRLEVFDRE 416

Query: 410 K 410
           +
Sbjct: 417 E 417


>gi|237510128|ref|ZP_04522843.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Burkholderia pseudomallei
           MSHR346]
 gi|235002333|gb|EEP51757.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Burkholderia pseudomallei
           MSHR346]
          Length = 465

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 148/405 (36%), Positives = 212/405 (52%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 10  FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + L+L PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 70  LDA---RRFDVQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ F     R                    Y     +      LL +
Sbjct: 187 LFSATYPDGIAKLSQQF----LRHPKKVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLN 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF V A+HG ++QR R ++L  F   +  ++VA
Sbjct: 243 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHVLALHGELEQRERDQVLIRFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E Y+HRIGRTGRA + G A +L +  ++  +  IE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 362

Query: 362 KLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           + + ++V+W        G  + L PP+E + I      RK+   P
Sbjct: 363 QALAREVEWHPLAELKAGGDAPLLPPMETLQIL---GGRKDKIRP 404


>gi|227358108|ref|ZP_03842449.1| ATP-independent RNA helicase [Proteus mirabilis ATCC 29906]
 gi|227161444|gb|EEI46481.1| ATP-independent RNA helicase [Proteus mirabilis ATCC 29906]
          Length = 457

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 137/371 (36%), Positives = 217/371 (58%), Gaps = 9/371 (2%)

Query: 2   DFADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            FADL  L  + +  + + GY+  TP+Q  ++P +L   DV   A+TG+GKTA+F L +L
Sbjct: 3   SFADLHALPAEQLTNLNELGYLTMTPVQEASLPAILAGKDVRAQAKTGSGKTAAFGLGLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++    +    ++L+L PTRELA QVA+   +  +       L + G +PF  Q   L
Sbjct: 63  QRIDA---KQFNTQSLVLCPTRELADQVANELRRLARFLPNIKILTLCGGVPFSIQRDSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              A +++ TPGR+LDH N+  + + +++ LV+DEADRMLDMGF   I +I S +   RQ
Sbjct: 120 IHAAHIIVATPGRLLDHLNKQTVTLADVKTLVLDEADRMLDMGFFDDISDIISQMSAQRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  DE+ K+S    Q+P  IE+N+P       +  +  +          L Q L
Sbjct: 180 TLLFSATWPDEIAKISRKIQQDPVTIEINSPDELPAVEQQFYEISRYG----KLGLLQKL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S     + ++FCN K++  ++  +L +   SV A+HG+++Q+ R + L  F  G+ +++
Sbjct: 236 LSHHQPNSCVVFCNTKRDCQDVYEALTESNQSVLALHGDMEQKERDQTLIRFANGSCRVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+++ +  E +IHRIGRT RAG  G A +  A E+I   +A
Sbjct: 296 VATDVAARGLDIKALEMVINYELSHDPEVHIHRIGRTARAGESGLAISFCAPEEIPRANA 355

Query: 360 IEKLIEKKVDW 370
           +E+++  K+DW
Sbjct: 356 LEEMLNIKLDW 366


>gi|159465205|ref|XP_001690813.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158279499|gb|EDP05259.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 446

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 135/407 (33%), Positives = 211/407 (51%), Gaps = 7/407 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+  ++  A    G+  P+ IQ + IP +L   DV G+AQTG+GKT +F LP+L  
Sbjct: 19  FEKLGICTQLAEAAAGLGWKAPSHIQEQAIPHLLAGQDVIGLAQTGSGKTGAFSLPILQA 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     + +    LIL PTRELA Q+A+  E  G    +   +L+GGI   AQ   L + 
Sbjct: 79  LMD---KPQEHFALILSPTRELAIQIAEQVEALGSGIGVKSCVLVGGIDMMAQAIALAKR 135

Query: 123 ADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             VL+ TPGR++DH +  K      ++ LV+DEAD++LDM F   I  I  ++P  R+T 
Sbjct: 136 PHVLVGTPGRVVDHLSNTKGFSLKQLKHLVLDEADKLLDMDFEQEIDQILKVIPRERRTQ 195

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT+++QK+         +      +    T++          +K        + +
Sbjct: 196 LFSATMTNKVQKLQR---ACLDKPVKIEVAHKYSTVDTLRQQYVFIPAKYKDCYLAYVIN 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + +    +IF    ++   +   L   GF    IHG++ Q  R+  L+ FK G   ++VA
Sbjct: 253 ELSGSTFMIFTRTCESTRRIALLLRNLGFGAVPIHGHMSQPKRLGALNKFKSGERNILVA 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDIP V  V NFDVP  +++Y+HR+GRT RAGR G++ T+V + D++    IE
Sbjct: 313 TDVASRGLDIPSVDVVINFDVPQNSKDYVHRVGRTARAGRSGRSVTIVTQYDVELFQKIE 372

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
            L   K++    +   +   LE++  AQ     +         G  +
Sbjct: 373 HLTGVKMEQFQAEREEVLLLLERVSDAQRLATMQMKEADAGKKGKRK 419


>gi|145240499|ref|XP_001392896.1| ATP-dependent RNA helicase dbp4 [Aspergillus niger CBS 513.88]
 gi|134034071|sp|A2QS00|DBP4_ASPNC RecName: Full=ATP-dependent RNA helicase dbp4
 gi|134077418|emb|CAK45672.1| unnamed protein product [Aspergillus niger]
          Length = 802

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 127/455 (27%), Positives = 215/455 (47%), Gaps = 26/455 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL LS      +  + Y   T IQ + I   L+  D+ G A+TG+GKT +F++P+L 
Sbjct: 48  QFTDLPLSEPTASGLASSHYKTLTDIQSRAISHALKGRDILGAAKTGSGKTLAFLIPILE 107

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L + +         L+L PTRELA Q+ +   K G+ +  +  L+IGG     + ++L 
Sbjct: 108 NLYRKQWSEHDGLGALVLSPTRELAIQIFEVLRKVGRYHTFSAGLVIGGKSLREEQERLG 167

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +           +N+++LV+DEADR+LDMGF   +  I   +P  RQT
Sbjct: 168 RMNILVCTPGRMLQHLDQTSFFETHNLQMLVLDEADRILDMGFQKTVDAIIGHLPKERQT 227

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT T ++  ++   LQ+P+ + V+  +S+A   +           +K   +     
Sbjct: 228 LLFSATQTKKVSDLARLSLQDPEYVAVHEAASSATPSKLQQHYVVTPLPQKL-DVLWSFI 286

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQL 298
             +     I+F +  K V  +  S       V    +HG   Q  R+ I + F      +
Sbjct: 287 RSNLKSKTIVFLSSGKQVRFVYESFRHMQPGVPLMHLHGRQKQGGRLDITTKFSSAQHAV 346

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+AARGLD P V  V   D P  A+ YIHR+GRT R  R G+A   +   + K + 
Sbjct: 347 LFATDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEKGM- 405

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +++L +KKV             +E+I++  +      + +  ++  F   +  Y  QK+
Sbjct: 406 -LKRLEQKKVQ------------VERINVKANKQQSIKDQL--QNMCFKDPELKYLGQKA 450

Query: 419 HIP------LKESEKISKLQQDIQENDADSLGFRG 447
            I       +++ ++I  +++   +  A SLG  G
Sbjct: 451 FISYAKSVYVQKDKEIFNIKELKLDEFAGSLGLPG 485


>gi|330929272|ref|XP_003302577.1| hypothetical protein PTT_14452 [Pyrenophora teres f. teres 0-1]
 gi|311321983|gb|EFQ89342.1| hypothetical protein PTT_14452 [Pyrenophora teres f. teres 0-1]
          Length = 599

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 134/394 (34%), Positives = 209/394 (53%), Gaps = 20/394 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F +  L   ++  +  +GY  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+   
Sbjct: 198 FTNPPLDDHLLSNIELSGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQ 257

Query: 60  -----------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
                            GR R   P +L+L PTREL +Q+ D   K+     +   ++ G
Sbjct: 258 AFQNGPSPPPQQAQGGYGRQRKAYPTSLVLAPTRELVSQIFDEARKFAYRSWVRPCVVYG 317

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G    +Q +++ERG D+L+ TPGR++D   RG++ + +I+ LV+DEADRMLDMGF P I+
Sbjct: 318 GADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIR 377

Query: 169 NITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
            I            QTL+FSAT   ++Q ++ +FL++   + V    ST+E I       
Sbjct: 378 RIVEGEDMPPTAGRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKIEYV 437

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                +       +L + D     ++F   K+   +L   L  QGF   +IHG+  QR R
Sbjct: 438 EDVDKRSVL--LDILHTHDPTNLTLVFVETKRMADSLSDFLINQGFPATSIHGDRTQRER 495

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            K L  F+ G   ++VA+ +AARGLDIP V HV N+D+P   ++Y+HRIGRTGRAG  G 
Sbjct: 496 EKALEMFRNGRCPILVATAVAARGLDIPHVKHVVNYDLPTDIDDYVHRIGRTGRAGNTGI 555

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           A     + +   +  + +L+++    + G L S+
Sbjct: 556 ATAFFNRGNRGVVRDLLELLKEANQEVPGFLESI 589


>gi|281208736|gb|EFA82911.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 698

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 115/404 (28%), Positives = 191/404 (47%), Gaps = 11/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F  L +  K   A+ +  + K TPIQ KTI  +L+  D+ G A+TG+GKT +F++P +
Sbjct: 194 IEFNSLPIEEKTKKAIAEMKFTKMTPIQAKTIMPLLEGRDLLGAARTGSGKTLAFLIPAI 253

Query: 61  TILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLI--GGIPFEAQNK 117
            IL K   + R     +I+ PTRELA Q+     +   N+  T  L+I           +
Sbjct: 254 EILVKANFKPRNGTGVIIISPTRELALQIYGVARELMLNHTQTHGLVIGGNNDKRAEIER 313

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             +    ++      +    N    ++ N++ LVIDEADR+L++GF   +  I  L+P  
Sbjct: 314 LEKGVNLLVCTPGRLLDHLQNTRGFIVKNLKCLVIDEADRILEVGFEEDMHQIVKLLPKE 373

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T ++  ++                    T+E          S+K  LL  
Sbjct: 374 RQTMLFSATQTRKVDDIARVSFNKEPVYVGVDDDREVSTVEGLEQGYVVCPSEKRFLLLY 433

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  I+F +   +V      L   G  V   HG   Q+ R      F      
Sbjct: 434 TFLKKNLNKKVIVFLSSCNSVKYHAELLNFIGIPVLEFHGKQKQQKRTNTFYEFVNAEKG 493

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
           +++ +D+AARG+DIP V  +  FD P+  + YIHR+GRT R  G+ G+A   +  +++  
Sbjct: 494 ILICTDVAARGVDIPSVDWIIQFDPPDDPKEYIHRVGRTARGVGKKGRALLFLLPQELTF 553

Query: 357 IDAIEKLIEKKV---DWLNGDLSSLNPPLEKI---DIAQHNHAR 394
           +  + KL +  +   ++    +S++   LEK+   +   HN AR
Sbjct: 554 LKYL-KLAKVPLNEYEFPQKKVSNVQDQLEKLVANNYYLHNSAR 596


>gi|238753931|ref|ZP_04615291.1| ATP-dependent RNA helicase srmB [Yersinia ruckeri ATCC 29473]
 gi|238707919|gb|EEQ00277.1| ATP-dependent RNA helicase srmB [Yersinia ruckeri ATCC 29473]
          Length = 437

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 140/440 (31%), Positives = 231/440 (52%), Gaps = 14/440 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP + 
Sbjct: 5   NFSELDLDDRLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K+  L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I +   + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT   + +++ +E  L+ P  +E +      + I+  +        K        L
Sbjct: 185 LLFSATLEGEAIREFAERILEEPVELEADPSRRERKKIQQWYYRADDIEHKTAL--LVHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  ++  IIF   ++ V  L   L + G +   + G + Q  R + +    +G + ++
Sbjct: 243 LKQPDVQKSIIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDIASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHDHLLLGR 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           I + +++ +      +  L P       ++   A+      +K     +  K  S +K+ 
Sbjct: 363 IGRYLKEPLK--PRVIDELRP------TSKEPSAKSTGKPSKKVLAKRKELKEASKEKTK 414

Query: 420 IPL--KESEKISKLQQDIQE 437
           + +  ++++ + K ++   +
Sbjct: 415 VKVRHRDAKNVGKRRKPKDK 434


>gi|221124370|ref|XP_002163179.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
           [Hydra magnipapillata]
          Length = 594

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 132/411 (32%), Positives = 211/411 (51%), Gaps = 16/411 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH---------DVCGIAQTGTGKTA 53
           F +LGL+P +V A  D GY +PT +Q K IPL +            D+   +QTG+GKTA
Sbjct: 44  FVELGLAPALVQACKDLGYTQPTTVQQKAIPLAMAGVGSEKAGKFVDLMVSSQTGSGKTA 103

Query: 54  SFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
           +F+LP+L  L     +   P  LI+ PTRELA QVA +     ++        I G    
Sbjct: 104 AFLLPVLHTLLF---KAPTPGALIVCPTRELAQQVAHDAIDLVQHCRGLRVANIVGGMPY 160

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
                  + A++++ TPGR+LD     ++ ++ ++ LV+DEADRMLD+GF   +  I  L
Sbjct: 161 QLQIAKLQNANLVVATPGRLLDLQRSMQIKLDQVQFLVVDEADRMLDLGFADDLAEINQL 220

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
               +QT++FSAT    +Q+++   ++ P+R+ +++P      I+           K+  
Sbjct: 221 TIDRKQTMMFSATFAPRIQQLAARVMREPQRVTIDSPQEKHANIKQVLFWADNAQHKRKL 280

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                     T+   ++F + +     L + L++ GFS  A+HG + Q  R + L   ++
Sbjct: 281 --LDHWLRDTTINQAVVFASTQIECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRQ 338

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G +Q++VA+D+AARG+D+P + HVFNF +P +AE+Y HRIGRTGRAGR G A T     D
Sbjct: 339 GQVQILVATDVAARGIDVPTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRD 398

Query: 354 IKHIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
            + I  IE    + +  + + G       P  +             P  +K
Sbjct: 399 RRKIFDIEAYSRQPIKPETIPGLEPQQRAPESRPSFGGRGRGGDFQPRERK 449


>gi|327405768|ref|YP_004346606.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327321276|gb|AEA45768.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 685

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 135/404 (33%), Positives = 223/404 (55%), Gaps = 17/404 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59
           M F +LGL  +V+ ++   G+ +PTPIQ   IP +LQ   D  G+AQTGTGKTA+F LP+
Sbjct: 1   MTFKELGLRVEVLQSIEALGFAEPTPIQQSAIPHLLQLESDFVGLAQTGTGKTAAFGLPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKK 118
           +  +     R    + L++ PTREL  Q++ + E + K       + + G      Q   
Sbjct: 61  IHKVTD---RPTETQGLVIAPTRELCLQISKDLEAFAKFDQQIKVVAVYGGTDIRKQITD 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++RGA V++ TPGR++D  NR  + +  +E +V+DEAD ML+MGF   I  I S  P T+
Sbjct: 118 IKRGATVVVATPGRLVDLINRKAINLKTVETVVLDEADEMLNMGFKEDIDAILSATPDTK 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
              LFSATM  E+  +++N++ +P  + +   + + E IEH     Y    +      + 
Sbjct: 178 SVWLFSATMPKEVAAIAKNYMTDPLEVAMGHKNQSNENIEH---IYYTVKERDRYDALKR 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L        G++FC  +     +   L K+G+S   +HG++ Q  R +++  F+E +IQL
Sbjct: 235 LIDASPDIFGLVFCRTRNETATVAEKLAKEGYSAEPLHGDLSQAMRDRVMDRFRERSIQL 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ ++ HV N+++P+  ENY HR GRT RAG+ GK+  L+   +   I 
Sbjct: 295 LVATDVAARGIDVDNITHVINYNLPDDIENYTHRSGRTARAGKQGKSLVLINTRENFKIK 354

Query: 359 AIEKLIEKKV---------DWLNGDLSSLNPPLEKIDIAQHNHA 393
           AIE+ I             +     L+ L   +++I++ +++ A
Sbjct: 355 AIERQIRTTFKAALIPEASEICGIQLNKLISKVKEIEVKENDIA 398


>gi|326538779|gb|ADZ86994.1| DEAD/DEAH box helicase domain protein [Brucella melitensis M5-90]
          Length = 455

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 151/421 (35%), Positives = 234/421 (55%), Gaps = 8/421 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 9   FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 68

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 69  IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 129 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 188

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 189 ALFSATMPKEIASLAERLLRDPVRVEVAPQGATASEI---TQVVHPVPTKEKRRLLSAML 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 246 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 306 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 365

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E++   K+   +  +     P+ K    Q    R      +K+     R+    + + H
Sbjct: 366 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--GQRTEQAESRKAPAHKHRRPAQKAGEQH 423

Query: 420 I 420
            
Sbjct: 424 R 424


>gi|265991134|ref|ZP_06103691.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265999460|ref|ZP_05466486.2| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|263001918|gb|EEZ14493.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263094098|gb|EEZ18020.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409073|gb|ADZ66138.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis M28]
          Length = 462

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 151/421 (35%), Positives = 234/421 (55%), Gaps = 8/421 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 16  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 76  IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 135

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 136 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 195

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 196 ALFSATMPKEIASLAERLLRDPVRVEVAPQGATASEI---TQVVHPVPTKEKRRLLSAML 252

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 253 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 312

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 313 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 372

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E++   K+   +  +     P+ K    Q    R      +K+     R+    + + H
Sbjct: 373 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--GQRTEQAESRKAPAHKHRRPAQKAGEQH 430

Query: 420 I 420
            
Sbjct: 431 R 431


>gi|260564054|ref|ZP_05834540.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|260154070|gb|EEW89162.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
          Length = 510

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 151/421 (35%), Positives = 234/421 (55%), Gaps = 8/421 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGATASEI---TQVVHPVPTKEKRRLLSAML 325

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 326 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 445

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E++   K+   +  +     P+ K    Q    R      +K+     R+    + + H
Sbjct: 446 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--GQRTEQAESRKAPAHKHRRPAQKAGEQH 503

Query: 420 I 420
            
Sbjct: 504 R 504


>gi|225708116|gb|ACO09904.1| ATP-dependent RNA helicase DDX39 [Osmerus mordax]
          Length = 427

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 97/383 (25%), Positives = 170/383 (44%), Gaps = 4/383 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY       V      I  + +  K    
Sbjct: 106 IEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPTVKAAVFFGGMAIKKDEEVLKKNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L N    ++ +    +  +     +Q+I  L P  +Q ++
Sbjct: 166 HIVVGTPGRILALSRNKTLSLKNVKHFVLDECDKMLEALDMRRDVQDIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  V L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCVALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKTLNDVQ 403

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
              E  V  L  ++  ++P +E+
Sbjct: 404 DRFEVNVAELPEEI-DISPYIEQ 425


>gi|28393424|gb|AAO42134.1| putative DEAD/DEAH box RNA helicase [Arabidopsis thaliana]
          Length = 633

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 133/390 (34%), Positives = 208/390 (53%), Gaps = 15/390 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA++ L   +   +    YVKPTP+Q   IP++L+  D+   AQTG+GKTA+F  P+++
Sbjct: 160 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIIS 219

Query: 62  ILEKGRA-------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            + K +        R   P  +IL PTRELA+Q+ D  +++     + V +  GG P   
Sbjct: 220 GIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKRFSYQTGVKVVVAYGGTPINQ 279

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++LERG D+L+ TPGR+ D   R ++ M  I  L +DEADRMLDMGF P I+ I   +
Sbjct: 280 QLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQM 339

Query: 175 PFTRQTLL----FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
               + +     FSAT   E+Q+++ +FL N   + V    S+ + I            +
Sbjct: 340 DMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKR 399

Query: 231 KCALLQQLLQSQDTMKN----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              +     Q ++ ++      ++F   K+   +L + L   GF   +IHG+  Q+ R  
Sbjct: 400 SHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREV 459

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G A 
Sbjct: 460 ALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLAT 519

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
                 +      + +L+++    +   L+
Sbjct: 520 AFFNDGNTSLARPLAELMQEANQEVPEWLT 549


>gi|17987217|ref|NP_539851.1| ATP-dependent RNA helicase RHLE [Brucella melitensis bv. 1 str.
           16M]
 gi|225852555|ref|YP_002732788.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis ATCC 23457]
 gi|256044711|ref|ZP_05447615.1| DEAD/DEAH box helicase domain protein [Brucella melitensis bv. 1
           str. Rev.1]
 gi|17982889|gb|AAL52115.1| ATP-dependent RNA helicase rhle [Brucella melitensis bv. 1 str.
           16M]
 gi|225640920|gb|ACO00834.1| DEAD/DEAH box helicase domain protein [Brucella melitensis ATCC
           23457]
          Length = 535

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 151/421 (35%), Positives = 234/421 (55%), Gaps = 8/421 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGATASEI---TQVVHPVPTKEKRRLLSAML 325

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 326 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 445

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E++   K+   +  +     P+ K    Q    R      +K+     R+    + + H
Sbjct: 446 VERVTRSKLSIKDAPVKLAPAPVAKGPAPQ--GQRTEQAESRKAPAHKHRRPAQKAGEQH 503

Query: 420 I 420
            
Sbjct: 504 R 504


>gi|212638706|ref|YP_002315226.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
 gi|212560186|gb|ACJ33241.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
          Length = 426

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 198/377 (52%), Gaps = 13/377 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ A+    + KPTPIQ + IP VL+   V G +QTGTGKT +++LP++  
Sbjct: 2   FERFSFHPFIIEAIEHLKFHKPTPIQERVIPAVLRGESVIGQSQTGTGKTHAYLLPIIQR 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVAD----NFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           ++    RV   + +I  PTRELA Q+        +    ++ +T    +GG       +K
Sbjct: 62  IDP---RVAEVQAVITAPTRELATQIYHEVLKITKFCPNDHRITARCFVGGTDKLRSIEK 118

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+    ++I TPGRI D      L ++   +LV+DEAD MLDMGFI  +  +   +P   
Sbjct: 119 LKTQPHLVIGTPGRIDDLVREQALFVHTARMLVVDEADVMLDMGFIADVDRVAGRMPEDL 178

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+   + ++++P  I +      A TIEH  +       +    L   
Sbjct: 179 QMLVFSATIPEKLKPFLKKYMEHPTHIHIAPKQIAAPTIEHILIPLRH---RDRLQLLHD 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +         ++F N +K    + + L  +G  V  +HG++  R R K++   ++   Q 
Sbjct: 236 VLVSYNPYLALVFVNTRKTADEVANGLIDKGLKVGVLHGDLSPRERKKMMKAIRDLQFQY 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N+++P+  + Y+HR GRTGRAG  G A T+    D   + 
Sbjct: 296 IVATDLAARGIDIEGVSHVINYELPSDLDFYVHRAGRTGRAGYKGVAATIYETSDQYALV 355

Query: 359 AIEKLIEKKVDWLNGDL 375
            +EK   K + +L+ DL
Sbjct: 356 KLEK---KGIQFLHRDL 369


>gi|197337401|ref|YP_002157747.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Vibrio fischeri MJ11]
 gi|197314653|gb|ACH64102.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Vibrio fischeri MJ11]
          Length = 462

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 130/368 (35%), Positives = 203/368 (55%), Gaps = 7/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L P ++  +   GY + TPIQ +++P +L+  DV    +TG+GKTA+F L +L 
Sbjct: 5   SFSSLDLHPSLLQNLETLGYNEMTPIQAQSLPFMLKGKDVIAQGKTGSGKTAAFGLGLLA 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+   +L+L PTRELA QVA    K  +  +    L +  G+PF  Q   LE
Sbjct: 65  NLNVKRFRVQ---SLVLCPTRELADQVAKEIRKLARAIHNIKVLTLCGGVPFGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ +H  +G L ++N+   V+DEADRML+MGF   I  +    P  RQ 
Sbjct: 122 HGAHIIVGTPGRVEEHLRKGYLNLDNLNTFVLDEADRMLEMGFQDAIDAVLDHAPVKRQN 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT   +++ +++  + +P   +      T E              +      Q+L 
Sbjct: 182 LLFSATFPPQIKSIADRIMNDPIMTKAEE---TVENTSINQHFFKVGDFEDRLEALQILL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   ++ +IFCN K+    +   L    FSV A+HG+++QR R K L  F   +  ++V
Sbjct: 239 LKHQPESTVIFCNTKRVTQEVADELRHYDFSVTALHGDLEQRDRDKALVRFANKSTSILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRTGRAG  G A +L  ++++ +I  I
Sbjct: 299 ATDVAARGLDIESLDAVVNFELSRDPEVHVHRIGRTGRAGNKGIALSLFNEKEMHNIAQI 358

Query: 361 EKLIEKKV 368
           E+ +   +
Sbjct: 359 EEYMNIDI 366


>gi|59713337|ref|YP_206112.1| ATP-dependent RNA helicase DbpA [Vibrio fischeri ES114]
 gi|59481585|gb|AAW87224.1| ATP-dependent RNA helicase, specific for 23S rRNA [Vibrio fischeri
           ES114]
          Length = 462

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 130/368 (35%), Positives = 203/368 (55%), Gaps = 7/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L P ++  +   GY + TPIQ +++P +L+  DV    +TG+GKTA+F L +L 
Sbjct: 5   SFSSLDLHPSLLQNLETLGYNEMTPIQAQSLPFMLKGKDVIAQGKTGSGKTAAFGLGLLA 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+   +L+L PTRELA QVA    K  +  +    L +  G+PF  Q   LE
Sbjct: 65  NLNVKRFRVQ---SLVLCPTRELADQVAKEIRKLARAIHNIKVLTLCGGVPFGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ +H  +G L ++N+   V+DEADRML+MGF   I  +    P  RQ 
Sbjct: 122 HGAHIIVGTPGRVEEHLRKGYLNLDNLNTFVLDEADRMLEMGFQDAIDAVLDHAPVKRQN 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT   +++ +++  + +P   +      T E              +      Q+L 
Sbjct: 182 LLFSATFPPQIKSIADRIMNDPIMTKAEE---TVENTSINQHFFKVGDFEDRLEALQILL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   ++ +IFCN K+    +   L    FSV A+HG+++QR R K L  F   +  ++V
Sbjct: 239 LKHQPESTVIFCNTKRVTQEVADELRHYDFSVTALHGDLEQRDRDKALVRFANKSTSILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRTGRAG  G A +L  ++++ +I  I
Sbjct: 299 ATDVAARGLDIESLDAVVNFELSRDPEVHVHRIGRTGRAGNKGIALSLFNEKEMHNIAQI 358

Query: 361 EKLIEKKV 368
           E+ +   +
Sbjct: 359 EEYMNIDI 366


>gi|24374899|ref|NP_718942.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24349603|gb|AAN56386.1|AE015775_3 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 409

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 174/413 (42%), Positives = 241/413 (58%), Gaps = 16/413 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F+ L L+ ++V  + + GY +PTPIQ++ IP +L + DV   AQTGTGKTA+F LP+ 
Sbjct: 1   MSFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL 60

Query: 60  --LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L    +     +  R L+L PTRELA QV  +F KY K  ++ V +  GG+  EAQ  
Sbjct: 61  QLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
               G DVLI TPGR+LDH  +G L +N +  LV DEADRMLDMGF+  IQ +   VP  
Sbjct: 121 VFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT+ D +   S+N L++PKRIEV  P++TA  I       YA  S +      
Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQI---EQRVYAIDSDRKTEFVS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L      +  +IF   K+ V  L   L K G +  + HG++ Q +R K+L  FK+G +Q
Sbjct: 238 HLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ +V NF++P  AE+YIHRIGRTGRAG  G A TL ++ED   +
Sbjct: 298 VLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLL 357

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           + +E L++K++   W  G     N  L           R+N+   QK     R
Sbjct: 358 EEVETLLDKRLPQQWYPGFEPDFNKML--------PEPRRNSKAAQKQRAKKR 402


>gi|169883094|gb|ABZ02207.1| VASA [Trichosurus vulpecula]
          Length = 704

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 115/375 (30%), Positives = 179/375 (47%), Gaps = 11/375 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q   IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 266 LTFEETDLCQTLNNDITKAGYTKLTPVQKYGIPIILAGRDLMACAQTGSGKTAAFLLPIL 325

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             + +           + P  +I+ PTREL  Q+     K+     +   ++ GG     
Sbjct: 326 AHMMRDGVTASRFKDQQEPECIIVAPTRELINQIFLEARKFSFGTCVRPVVIYGGTQLGH 385

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
             +++ +G ++L  TPGR++D   + K+ +  I  LV+DEADRMLDMGF P ++      
Sbjct: 386 SIRQIMQGCNILCATPGRLMDIIGKEKIGLGQIRYLVLDEADRMLDMGFGPEMKKLISFP 445

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT      K           I +                       
Sbjct: 446 GMPSKEQRQTLMFSATFPRGNFKDWAGEFLKNLTICLVAVGQVGGACSDVQQTVLQVGQY 505

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
                   +      +  ++F   KK    +   L ++  S  +IHG+ +QR R + L +
Sbjct: 506 SKREKLVEILRNIGEERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 565

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI +V HV NFD+P+  + Y+HRIGRTGR G  GKA +   
Sbjct: 566 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGKAISFFD 625

Query: 351 KE-DIKHIDAIEKLI 364
            E D      + K++
Sbjct: 626 PEPDSHLAQPLVKVL 640


>gi|118572555|sp|Q0UR48|HAS1_PHANO RecName: Full=ATP-dependent RNA helicase HAS1
          Length = 610

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 115/378 (30%), Positives = 191/378 (50%), Gaps = 6/378 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS + + A+   G+   T IQ K IP +L   DV G A+TG+GKT +F++P + +
Sbjct: 133 FDELNLSERTMEAIKTMGFESMTEIQRKAIPPLLSGKDVLGAAKTGSGKTLAFLIPAIEM 192

Query: 63  LEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   R + R    +I+  PTRELA Q+     +  + ++ T  ++IGG    A+ +KL +
Sbjct: 193 LSSMRFKPRNGTGVIVVSPTRELALQIFGVARELMEKHSQTFGIVIGGANRRAEAEKLAK 252

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           G ++LI TPGR +    N    +  N++ L+IDEADR+L++GF   +++I  ++P  RQT
Sbjct: 253 GVNLLIATPGRLLDHLHNTQGFVFKNLKSLIIDEADRILEVGFEDEMRSIIKILPTDRQT 312

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT T +++ ++   L+               T+E          S     L     
Sbjct: 313 MLFSATQTTKVEDLARISLKAGPLYINVDYRKEHSTVEGLEQGYVICDSDTRFRLLFSFL 372

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   K  I+F +   +V      L      V  +HG + Q++R      F       ++
Sbjct: 373 KKHQKKKVIVFFSSCNSVKFYAELLNYIDLPVLELHGKLKQQARTNRFFEFCNAQSGTLI 432

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHIDA 359
            +D+AARGLDIP+V  V  FD P+   +YIHR+GRT R     G++   +   +I  +  
Sbjct: 433 CTDVAARGLDIPEVDWVIQFDPPDDPRDYIHRVGRTARGSEGKGRSLMFLLPSEIGFLKL 492

Query: 360 IEKLIEKKVDWLNGDLSS 377
           ++   E +V  +  +L +
Sbjct: 493 LK---EARVPLVEFELPA 507


>gi|328870357|gb|EGG18732.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 734

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 114/448 (25%), Positives = 198/448 (44%), Gaps = 26/448 (5%)

Query: 2   DFADL-----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFV 56
            F +L      +   ++  +  A Y  P+PIQ+++IP ++   +V   A TG+GKTA+F 
Sbjct: 244 SFDELLEEPYNMRQYILKNIRAAKYKDPSPIQMQSIPAIISGREVIACAPTGSGKTAAFS 303

Query: 57  LPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +P+L  L +   +    R +I+ PTRELA Q+  NF  + K     + +L   +  +   
Sbjct: 304 IPILQSLHEP--KKLGFRCVIVSPTRELAQQIYRNFRLFSKGKPFKICVLSKTVSGDQMA 361

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
              +    ++      +    +R   L +   ++  +      D         I +    
Sbjct: 362 PISKNFDILITTPQRIVNLIQSRVVKLNHVEHLVFDEADKLFDDQFLEQVDSVINACKNA 421

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           + +  LFSATM   +++++ + ++NP ++ + + +S +  ++   +    +  K  A   
Sbjct: 422 SLKIHLFSATMNVVVEEMARSIMKNPIKVLIGSQNSASINVDQKLLFVGKEDGKLLA--L 479

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + L  +      +IF   K+    L   L     +V  IH +  Q+ R  I+  F+ G I
Sbjct: 480 RQLFQKGLEPPILIFVQSKERATELFQELIFDNINVDVIHSDRTQQQRDTIVQRFRSGKI 539

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++ ++L ARG+D   V +V NFD PN   +Y+HRIGRTGRAGR GKA TL  K+D   
Sbjct: 540 WVLICTELMARGMDFKGVNYVINFDFPNTIASYVHRIGRTGRAGRQGKAITLYTKDDFPM 599

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           I +I  +I              N   +  D  QH    K      + +    R+K+ S+ 
Sbjct: 600 IPSISNVIR-------------NSGYDTPDWMQHLTTDKITDGYAEDSEVKVRRKSVST- 645

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
              IP  E  KI    +  Q       G
Sbjct: 646 ---IPANERWKIHVNNKKEQTRKQIQYG 670


>gi|167035545|ref|YP_001670776.1| ATP-dependent RNA helicase RhlB [Pseudomonas putida GB-1]
 gi|166862033|gb|ABZ00441.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 489

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 131/380 (34%), Positives = 211/380 (55%), Gaps = 11/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F D  LS +++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ +   
Sbjct: 102 FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQ 161

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K 
Sbjct: 162 LQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKA 221

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 222 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 281

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT TD++  +++ +  NP  +E+   +  +ET+E    A       K    
Sbjct: 282 SERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYN 341

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                +Q+  +  ++F N+K  V  +   L + G +   + G++ Q  R++ L +F+EG 
Sbjct: 342 L---VTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGR 398

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 399 ITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGSSGVSISFAGEDDSY 458

Query: 356 HIDAIEKLIEKKVD-WLNGD 374
            + AIE+L+ +K+   +  D
Sbjct: 459 QLPAIEELLGRKIKCEMPPD 478


>gi|74192407|dbj|BAE43010.1| unnamed protein product [Mus musculus]
          Length = 427

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 165/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  +  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATMQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY  +  ++V      I  +    K    
Sbjct: 106 IEPVNGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    +R   L N    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 166 HVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRFEVNVAELPEEID 418


>gi|257437800|ref|ZP_05613555.1| ATP-dependent RNA helicase DeaD [Faecalibacterium prausnitzii
           A2-165]
 gi|257199723|gb|EEU98007.1| ATP-dependent RNA helicase DeaD [Faecalibacterium prausnitzii
           A2-165]
          Length = 395

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 197/366 (53%), Gaps = 7/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M +++L  S  +  AV   G+ + T IQ KTIP++L   DV   A TGTGKT +F +P+ 
Sbjct: 1   MLYSELQCSEAIHKAVERMGFAEMTEIQEKTIPVMLAGRDVIAKAPTGTGKTCAFGIPVA 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             ++      + P+ +I+ PTRELA Q+A+   +            + G    E Q ++L
Sbjct: 61  EHIDP---EKKYPQAVIMAPTRELAQQIAEELTELTYFMPEVQVACVYGGANMEKQARRL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  +++ TPGR++DH+    + + ++  +V+DEAD ML+MGF   +++I  L+   + 
Sbjct: 118 AEGCQIVVATPGRLMDHYKHHSIDLAHVTQVVLDEADEMLNMGFYKDVRHIIELMKARKS 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +FSAT++ E+  +   +  N + I   T     E+             +        +
Sbjct: 178 LSMFSATISREVMDIGWLYQNNAEEI---TVQPREESQPKITQYMLETSGRNKLSDLAQI 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  K  ++FC+ K N   L + L + GFSV  +HG++ Q+ R +I+ NF++G + ++
Sbjct: 235 IIGEGYKRVMVFCDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQNFRDGRLAIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  V N+DVP   E+Y HRIGRTGRA + G ++     E+ K +  
Sbjct: 295 VATDVAARGIDVSDVDAVINYDVPGDNEHYTHRIGRTGRAKKEGVSYLFYVPEEKKRVQE 354

Query: 360 IEKLIE 365
           + +L  
Sbjct: 355 LLRLTR 360


>gi|15227951|ref|NP_181780.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|108861890|sp|Q84W89|RH37_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 37
 gi|4559339|gb|AAD23001.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
 gi|330255039|gb|AEC10133.1| DEAD-box ATP-dependent RNA helicase 37 [Arabidopsis thaliana]
          Length = 633

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 134/390 (34%), Positives = 208/390 (53%), Gaps = 15/390 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA++ L   +   +    YVKPTP+Q   IP++L+  D+   AQTG+GKTA+F  P+++
Sbjct: 160 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIIS 219

Query: 62  ILEKGRA-------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            + K +        R   P  +IL PTRELA+Q+ D  +K+     + V +  GG P   
Sbjct: 220 GIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQ 279

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++LERG D+L+ TPGR+ D   R ++ M  I  L +DEADRMLDMGF P I+ I   +
Sbjct: 280 QLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQM 339

Query: 175 PFTRQTLL----FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
               + +     FSAT   E+Q+++ +FL N   + V    S+ + I            +
Sbjct: 340 DMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKR 399

Query: 231 KCALLQQLLQSQDTMKN----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              +     Q ++ ++      ++F   K+   +L + L   GF   +IHG+  Q+ R  
Sbjct: 400 SHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREV 459

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G A 
Sbjct: 460 ALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLAT 519

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
                 +      + +L+++    +   L+
Sbjct: 520 AFFNDGNTSLARPLAELMQEANQEVPEWLT 549


>gi|308454438|ref|XP_003089847.1| hypothetical protein CRE_06212 [Caenorhabditis remanei]
 gi|308268147|gb|EFP12100.1| hypothetical protein CRE_06212 [Caenorhabditis remanei]
          Length = 820

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 138/472 (29%), Positives = 222/472 (47%), Gaps = 23/472 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G++ K++  +    Y KPT IQ + IP ++   DV GIA+TG+GKT +F+LPM  
Sbjct: 147 TWAQCGVNLKMMNVLKKYEYTKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFR 206

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P  +IL PTRELA Q      K+ K   L VA   GG+    Q   L
Sbjct: 207 HILDQPELEEGDGPIAVILAPTRELAMQTYKEANKFAKVLGLRVACTYGGVGISEQIADL 266

Query: 120 ERGADVLICTPGRILD---HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  LV+DEADRM D GF P I  + + +  
Sbjct: 267 KRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRP 326

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +QT+LFSAT    ++ ++   L+ P  I V   S     +    V           L  
Sbjct: 327 DKQTVLFSATFPRHMEALARKVLEKPVEILVGGKSVVCSDVTQNAVICEEHQKLLKLLEL 386

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                 +   + +    Q+K    +   ++    SV  +HG IDQ  R   +++FK G I
Sbjct: 387 L-GMYYEQGSSIVFVDKQEKADDIVDQLMKTGYNSVAPLHGGIDQHDRDSSIADFKTGVI 445

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI-- 354
           +++VA+ +AARGLD+ ++  V N+D PN  E+Y+HR+GRTGRAG+ G A+T V  E I  
Sbjct: 446 KVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGKKGYAYTFVLPEQISQ 505

Query: 355 --------KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
                   K    I +  E        DL ++       +  +   A +   +     GF
Sbjct: 506 YGSQNYQEKMAGEICRAFETAGCKPPQDLKAM------FERFKKEMAAEGKEVKLGGKGF 559

Query: 407 DRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
           +     Y   ++     + +K+++L   ++    D       + + +  K R
Sbjct: 560 EGHGYKYDEGEAEADANK-KKMARLVHGMEAGGDDDDDLDEQLNSMIKTKRR 610


>gi|296394809|ref|YP_003659693.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus
           rotundus DSM 44985]
 gi|296181956|gb|ADG98862.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM
           44985]
          Length = 452

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 131/362 (36%), Positives = 191/362 (52%), Gaps = 5/362 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LG+   +V A+  AG   P PIQ   +P  L+  DV G   TG+GKT +F LPML 
Sbjct: 5   TFASLGVPQPIVSALAKAGVTAPFPIQAAALPPALEGRDVLGRGPTGSGKTLTFGLPMLA 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L  G ++ R PR L+L PTRELAAQVA        +  L  A ++GG+  + Q  +L R
Sbjct: 65  RLANGASKPRKPRGLVLVPTRELAAQVASALTPLAASVGLRTASVVGGLSMQRQIDELAR 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVL+ TPGR+ DH  +G ++++ + +  +DEAD+M DMGF+P +  I    P   Q L
Sbjct: 125 GVDVLVATPGRLADHLAQGTVVLDEVSVTALDEADQMADMGFLPQVVKILDRTPKKGQRL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ K+   +L NP        +++  T+EH  +    +  K           
Sbjct: 185 LFSATLDGQVDKLVRRYLDNPATCSTAPAAASVSTMEHHMLFVDQEQKKLVVTEIA---- 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F + K     L   L   G S  AIHG   Q +R + L  FK G + ++VA
Sbjct: 241 -AREGRTILFVHTKHGADRLTKRLRAVGVSAAAIHGGKAQNNRTRTLEAFKSGDVAVLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +++AARG+ I  V  V + D P   ++Y+HR GRT RAG  G   TLV   + +  +A+ 
Sbjct: 300 TNVAARGVHIDGVDLVVHVDPPADPKDYLHRAGRTARAGESGVVITLVTPAERRDAEAMA 359

Query: 362 KL 363
           + 
Sbjct: 360 RA 361


>gi|167614869|ref|ZP_02383504.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis Bt4]
          Length = 465

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 157/449 (34%), Positives = 227/449 (50%), Gaps = 18/449 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 10  FSALPLTPATLANLAQLGYTVMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + L+L PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 70  LDA---RRFDVQALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  L P TRQTL
Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ F     R                    Y     +      LL  
Sbjct: 187 LFSATYPDGIAKLSQQF----LRNPKEVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLK 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 243 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 362

Query: 362 KLIEKKVDWLN-GDLSS-----LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS- 414
           + + + V+W    +L +     L PP+E + I      RK+   P    G       +S 
Sbjct: 363 QALGRDVEWHPLAELKADGNEPLLPPMETLQIL---GGRKDKIRPGDVLGALTGDAGFSG 419

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSL 443
           SQ   I + E      L++ I  +    L
Sbjct: 420 SQIGKINVTEFSTYVALERGIARDALRKL 448


>gi|161723115|ref|YP_438416.2| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264]
          Length = 465

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 157/449 (34%), Positives = 227/449 (50%), Gaps = 18/449 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 10  FSALPLTPATLANLAQLGYTVMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + L+L PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 70  LDA---RRFDVQALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  L P TRQTL
Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ F     R                    Y     +      LL  
Sbjct: 187 LFSATYPDGIAKLSQQF----LRNPKEVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLK 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 243 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 362

Query: 362 KLIEKKVDWLN-GDLSS-----LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS- 414
           + + + V+W    +L +     L PP+E + I      RK+   P    G       +S 
Sbjct: 363 QALGRDVEWHPLAELKADGNEPLLPPMETLQIL---GGRKDKIRPGDVLGALTGDAGFSG 419

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSL 443
           SQ   I + E      L++ I  +    L
Sbjct: 420 SQIGKINVTEFSTYVALERGIARDALRKL 448


>gi|83652036|gb|ABC36100.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264]
          Length = 562

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 157/449 (34%), Positives = 227/449 (50%), Gaps = 18/449 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 107 FSALPLTPATLANLAQLGYTVMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 166

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + L+L PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 167 LDA---RRFDVQALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH 223

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  L P TRQTL
Sbjct: 224 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTL 283

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ F     R                    Y     +      LL  
Sbjct: 284 LFSATYPDGIAKLSQQF----LRNPKEVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLK 339

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 340 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 399

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 400 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 459

Query: 362 KLIEKKVDWLN-GDLSS-----LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS- 414
           + + + V+W    +L +     L PP+E + I      RK+   P    G       +S 
Sbjct: 460 QALGRDVEWHPLAELKADGNEPLLPPMETLQIL---GGRKDKIRPGDVLGALTGDAGFSG 516

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSL 443
           SQ   I + E      L++ I  +    L
Sbjct: 517 SQIGKINVTEFSTYVALERGIARDALRKL 545


>gi|67598709|ref|XP_666233.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54657185|gb|EAL36001.1| hypothetical protein Chro.30274 [Cryptosporidium hominis]
          Length = 868

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 132/373 (35%), Positives = 202/373 (54%), Gaps = 1/373 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   G SPK++ ++   GY  PTPIQ K  P +L   DV  +A+TG+GKTA FVLPM+ 
Sbjct: 5   TFQSFGFSPKLLESIKIIGYSLPTPIQRKCFPSILAGRDVVAMARTGSGKTAGFVLPMIE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L    +++   R ++L PTRELA Q      K     NL V  L GG   + Q + L  
Sbjct: 65  RLGCSHSQIVGIRGVVLSPTRELALQTYRVVRKLACKTNLVVCALTGGSSLDRQFESLSG 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+  H     L +  ++I+++DEADR+ +MG    I+ I   +P  RQ +
Sbjct: 125 NPDIVVATPGRLFHHIIEAGLSLIAVKIIILDEADRLFEMGLASQIEKILESIPKNRQCV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM   L   S+  L  P+ I++++    +ET+         +  K  +LL  L  +
Sbjct: 185 LVSATMPTALASFSKVMLNEPEVIQIDSDYILSETL-KLTFLFVREDEKLASLLYLLRNT 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  IIFC  K +V  +   LE     V  I+GN+DQ +R   LS F++   + +V 
Sbjct: 244 IPSHERAIIFCATKHHVDYIVKILESNNIIVSYIYGNMDQEARTMHLSTFRKNKSRALVV 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP + +V NFD P   + ++HR GRT RAG+HG+AF+L+   D+ +   + 
Sbjct: 304 TDIAARGVDIPMIKYVINFDFPLSPKLFVHRTGRTARAGQHGRAFSLITSRDLPYTIDLC 363

Query: 362 KLIEKKVDWLNGD 374
             +  K+  L   
Sbjct: 364 LFLGLKMTTLTSK 376


>gi|213514512|ref|NP_001133398.1| Spliceosome RNA helicase BAT1 [Salmo salar]
 gi|209153419|gb|ACI33160.1| Spliceosome RNA helicase BAT1 [Salmo salar]
          Length = 428

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 164/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 47  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY     + V      I  + +  K E  
Sbjct: 107 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPTIKVAVFFGGLSIKKDEEVLKKECP 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L +    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 167 HVVVGTPGRILALIRNKTLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRLTPHEKQVMM 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  I V+  +         +        K   L        
Sbjct: 227 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL--LDV 284

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  V L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 285 LEFNQVVIFVKSVQRCVALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 344

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V   FN+D+P  ++ Y+HR+ R GR G  G A T V+ E D + ++ ++
Sbjct: 345 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDARTLNDVQ 404

Query: 362 KLIEKKVDWLNGDLS 376
              E  +  L  ++ 
Sbjct: 405 DRFEVNISELPDEID 419


>gi|156367199|ref|XP_001627306.1| predicted protein [Nematostella vectensis]
 gi|156214212|gb|EDO35206.1| predicted protein [Nematostella vectensis]
          Length = 669

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 131/391 (33%), Positives = 204/391 (52%), Gaps = 17/391 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F D+ L   ++  V  AGY KPTP+Q   IP+V  + D+   AQTG+GKTA+F++P+   
Sbjct: 194 FEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKTAAFLIPILSR 253

Query: 60  --------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
                      ++    R + P  L+L PTRELA Q+ D   K+         ++ GG  
Sbjct: 254 IYMEGPPAPPDIKHAGRRRQYPICLVLAPTRELAVQIFDEARKFSYRSLCRPCVVYGGAD 313

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
             +Q ++L+R   +L+ TPGR++D  +RG++ +++I  LV+DEADRMLDMGF P I+ I 
Sbjct: 314 IGSQLRELDRNCHLLVATPGRLVDMMDRGRVGLDSIRFLVLDEADRMLDMGFEPQIRRIV 373

Query: 172 SLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
                     RQTL+FSAT   E+Q ++ +FL+N   + V    ST+E I    V     
Sbjct: 374 DQDSMPKTGIRQTLMFSATFPKEIQMLARDFLENYIFLAVGKVGSTSENITQKVVWVDEF 433

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             +   L          +    +   +  + + +  + +       +IHG+  QR R + 
Sbjct: 434 DKRSFLLDLLNASGPQQLTLVFVETKKGADALEMFLAKDGYY--CTSIHGDRSQREREEA 491

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L  F+ G   ++VA+ +AARGLDIP+V HV NFD+P   E Y+HRIGRTGR G  G A +
Sbjct: 492 LRTFRCGDTPILVATAVAARGLDIPNVKHVINFDLPTDIEEYVHRIGRTGRVGHTGLATS 551

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
               ++      +  ++E+    +   L S+
Sbjct: 552 FFNHKNKNVAKELMDILEESKQEIPSWLESM 582


>gi|160897857|ref|YP_001563439.1| DEAD/DEAH box helicase domain-containing protein [Delftia
           acidovorans SPH-1]
 gi|160363441|gb|ABX35054.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
          Length = 438

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 123/393 (31%), Positives = 192/393 (48%), Gaps = 20/393 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+FA LGLSP +V ++ D G V PTPIQ ++I  VL   D+   A TG+GKTA+++LP+L
Sbjct: 1   MNFASLGLSPALVSSLQDLGLVDPTPIQTQSIAPVLAGRDLWACAPTGSGKTAAYLLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK---------NYNLTVALLIGGIP 111
                G          +   T  +     +  ++ G+              + ++ GG+ 
Sbjct: 61  QRWMDGGKAQGAQGGFVRTLTTLIVVPTRELAQQVGETLSDLGRALKQPPRIGVVYGGVS 120

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q   L   AD L+ TPGR+LD      + ++ +  LV+DEADR+LD+GF   +Q + 
Sbjct: 121 INPQMMMLRGSADFLVATPGRLLDLVEHNAVRLSAVRHLVLDEADRLLDLGFQDELQRVL 180

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +L+P  RQTLLFSAT  D +Q ++   L +P +  V+                     + 
Sbjct: 181 ALLPKQRQTLLFSATYPDAVQSLATGLLHDPVQARVDAAEGQDAASPQSITQRAIAVDRA 240

Query: 232 CALLQQLL---------QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                                T++  ++F   +     +   L K G    A HG++ Q 
Sbjct: 241 RRTQLLRQLVQGDTAAGTDPVTLERALVFVATRHTAELVAEKLYKAGIFATAFHGDLSQG 300

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
           +R + L++FK    Q+M+ +DLAARG+DI  +  V N+D+P  A +Y+HRIGRTGRAG  
Sbjct: 301 ARKEALADFKAKRWQVMITTDLAARGIDITQLPLVVNYDLPRSATDYVHRIGRTGRAGED 360

Query: 343 GKAFTLVAKEDIKHIDAIEKL--IEKKVDWLNG 373
           G A + V   D  H   I K   ++ +++ L G
Sbjct: 361 GTAISFVTPADQAHWALICKRNQLDLELEQLPG 393


>gi|255078748|ref|XP_002502954.1| predicted protein [Micromonas sp. RCC299]
 gi|226518220|gb|ACO64212.1| predicted protein [Micromonas sp. RCC299]
          Length = 435

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 128/382 (33%), Positives = 191/382 (50%), Gaps = 8/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  L    V  +   G+  PTP+Q +T P  L   DV  IA+TG+GKT +F+LP + 
Sbjct: 49  TFEESSLPAYCVDELAKCGFPSPTPVQSQTWPAALSGRDVISIAETGSGKTLAFLLPAVV 108

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       R   P  LIL PTRELA Q+ +    +GK+  +  A + GG P  AQ   L
Sbjct: 109 HINAQPYLERGDGPIVLILAPTRELAVQIQEQAATFGKSSKIKSACIYGGAPRNAQIAAL 168

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G ++ + TPGR+LD  N     +  +   V+DEADRMLD+GF P I+ +  L    RQ
Sbjct: 169 REGVELCVATPGRLLDLLNAKATNLRRVTYFVLDEADRMLDLGFEPQIRRVERLTRPDRQ 228

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK------KCA 233
           TLLF+AT   E+   + +F  +   + +   +  A       V    +  K         
Sbjct: 229 TLLFTATWPAEVAAAAGDFTNDVVTVRIGGEALRASDNVSQIVEVVDEDDKHAKLVGWLE 288

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                  +       I+F + K  V +    L  +GF   +IHG+  Q  R  +L  F+ 
Sbjct: 289 RALGEADAGGWTPRVIVFLSSKARVDSATRRLRHEGFPALSIHGDKTQEEREWVLGEFRA 348

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +M+A+D+AARGLD+ DV  V N+D P + E+Y+HRIGRTGRAG  G A ++ A  D
Sbjct: 349 GKSPVMLATDVAARGLDVKDVSLVINYDFPAKMEDYVHRIGRTGRAGAKGAARSMFAAGD 408

Query: 354 IKHIDAIEKLIEKKVDWLNGDL 375
            +H  ++  L++     +  +L
Sbjct: 409 ARHARSLCGLLQTAGQPVPREL 430


>gi|156053564|ref|XP_001592708.1| ATP-dependent RNA helicase DED1 [Sclerotinia sclerotiorum 1980]
 gi|160380639|sp|A7EJY3|DED1_SCLS1 RecName: Full=ATP-dependent RNA helicase ded1
 gi|154703410|gb|EDO03149.1| ATP-dependent RNA helicase DED1 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 678

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 131/396 (33%), Positives = 206/396 (52%), Gaps = 21/396 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFV---- 56
           + F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+    
Sbjct: 186 LKFTNPPLDDHLIKNIELAHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPIL 245

Query: 57  ----------LPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                     +P       GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 246 SQAFQTGPSPIPANAAGSFGRTRKAYPTSLILAPTRELVSQIFDESRKFAYRSWVRPCVV 305

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 306 YGGADIGSQLRQMERGCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQ 365

Query: 167 IQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 366 IRRIVEGEDMPGVQNRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVE 425

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +        +         +IF   K+   +L   L  Q F   +IHG+  QR
Sbjct: 426 YVEDIDKRSV---LLDILHTHGAGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQR 482

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 483 ERERALEMFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 542

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G +     + +   +  + +L+++    +   L ++
Sbjct: 543 GISTAFFNRGNRGVVRDLIELLKEANQEIPAFLENI 578


>gi|212633620|ref|YP_002310145.1| ATP-dependent RNA helicase DbpA [Shewanella piezotolerans WP3]
 gi|212555104|gb|ACJ27558.1| ATP-dependent RNA helicase DbpA [Shewanella piezotolerans WP3]
          Length = 458

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 137/369 (37%), Positives = 216/369 (58%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L  +++  +   G+   TPIQ +++P +L   DV G A+TG+GKTA+F L +L
Sbjct: 1   MPFSTLKLKTELLDNLTTMGFESMTPIQAQSLPAILNGEDVIGQAKTGSGKTAAFGLGLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L+  R R++   +L++ PTRELA QVA       +  +    L +  G+P   Q   L
Sbjct: 61  HKLDVKRFRIQ---SLVMCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH +RG+L ++++  LV+DEADRMLDMGF   ++ I   VP  RQ
Sbjct: 118 EHGAHIIVGTPGRIIDHLDRGRLHLDDVHTLVLDEADRMLDMGFQVELEAIVEQVPVERQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  ++++ ++++ +  P  ++V +   T ET            +       +LL
Sbjct: 178 TLLFSATFPEQIKSIADSIMFKPVLVKVAS---THETSTIDQHFYEVGNNNDRMRALKLL 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q   ++ ++FCN K+   ++   L+  GFSV A+HG+++QR R + L  F   ++ +M
Sbjct: 235 LLQHRPESAVVFCNTKRETKDVAAQLKNDGFSVVALHGDLEQRDRDQTLLQFANKSVSIM 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+ +    E +IHRIGRTGRAG  G A T  + ED   +  
Sbjct: 295 VATDVAARGLDIDALDAVINYHIAFDTEVHIHRIGRTGRAGSKGAAHTFYSDEDGYKVAL 354

Query: 360 IEKLIEKKV 368
           +E  +E+ +
Sbjct: 355 LEDYLERDI 363


>gi|47028621|gb|AAT09162.1| DEAD box protein AxVH [Ambystoma mexicanum]
          Length = 724

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 124/388 (31%), Positives = 203/388 (52%), Gaps = 12/388 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP+VL R D+   AQTG+GKTA+F+LP+L
Sbjct: 294 LTFEEANLPETLYNNISKAGYTKLTPVQKYSIPIVLARRDLMACAQTGSGKTAAFLLPIL 353

Query: 61  TILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L +       + ++ P  +I+ PTREL  Q+  +  K+     +   ++ GG      
Sbjct: 354 AHLMQDGIPPPTSELQEPEVIIVAPTRELINQIFLDARKFAYRTCIKPVVVYGGTQTIHS 413

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----IT 171
            +++ +G ++L  TPGR++D   R K+ +  +  LV+DEADRMLDMGF P ++       
Sbjct: 414 LRQIYQGCNILCATPGRLIDIIRREKIGLTKLRYLVLDEADRMLDMGFGPDMKTLVTSPG 473

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTL+FSAT  + +Q ++  FL+             A       +    QY KK
Sbjct: 474 MPTKEERQTLMFSATFPENIQSLAREFLKPDYLFVTVGQVGGACADVQQKILEVDQYEKK 533

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L++  +      +  ++F   KK    L   L ++  S  +IHG+  QR R + L++F
Sbjct: 534 DKLVE--ILQGLGKERTMVFVGTKKMADYLTTLLCQENISATSIHGDRLQREREEALADF 591

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-A 350
           + G   ++VA+++AARGLDI +V HV N+D+ +  E Y+HRIGRTGR G  GKA +   +
Sbjct: 592 RFGKCHVLVATNVAARGLDIENVQHVINYDLSDNIEEYVHRIGRTGRCGNVGKAISFFHS 651

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            ++     ++ K++      +   L  +
Sbjct: 652 NQNRDLAPSLLKVLSDAQQEVPTWLEEM 679


>gi|332374708|gb|AEE62495.1| unknown [Dendroctonus ponderosae]
          Length = 470

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 137/430 (31%), Positives = 221/430 (51%), Gaps = 12/430 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ L L   +V      G  +PTPIQ   IP +L+     G A+TG+GKT +F LP++ 
Sbjct: 7   NFSQLKLQNWIVKQCHSIGVKRPTPIQANCIPKILEGKTCIGAAKTGSGKTLAFALPIVQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L            L+L P RELA Q+AD F   GK  N+   +++GG+    Q ++L +
Sbjct: 67  KL---YEDPYGIYALVLTPIRELAFQIADQFAILGKPMNMRTCVVVGGMDMVEQGRQLSK 123

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR++DH         + I+ LVIDEADR+L   F   I+ I S++P TRQ+
Sbjct: 124 VPHVVVATPGRLVDHLEGCDTFTLSRIKFLVIDEADRLLGGLFDDQIKRIFSVLPKTRQS 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           + FSATMTD LQ + +   ++    E    +   + A   +   +            L +
Sbjct: 184 IYFSATMTDTLQTLKKLVAEDAFFYEDIGPSEAVTVAGLTQQYMLCPAYVKDAYLVELLR 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  S++     +IF N  KN   L  +L + G    A+H  I Q  R+  L+ FK   ++
Sbjct: 244 IFISENDQGTVMIFTNTCKNCQLLSITLNEVGMDNVALHAMIPQAQRLAALNRFKSNRVK 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLDIP+V  + N +VP   + Y+HR+GRT RAGR G+A TLV   D+K +
Sbjct: 304 ILIATDVASRGLDIPNVQLIINHNVPRIPKEYVHRVGRTARAGRQGRAVTLVTPYDLKLL 363

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            AIE+LI+ K+     +   +     ++ +      +    +   +T F  +K     +K
Sbjct: 364 LAIEELIKTKLTECKVNDKEVAEIFTEVSV-----TKSEAYMKLDATDFFEKKMINLKKK 418

Query: 418 SHIPLKESEK 427
             +   + E+
Sbjct: 419 WILEGLDPEE 428


>gi|297738935|emb|CBI28180.3| unnamed protein product [Vitis vinifera]
          Length = 916

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 139/386 (36%), Positives = 207/386 (53%), Gaps = 13/386 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA++ L   +   +    YVKPTPIQ   IP+ +   D+   AQTG+GKTA+F  P++  
Sbjct: 423 FAEIHLGEGLNQNIRRCKYVKPTPIQRHAIPIAMAGRDLMACAQTGSGKTAAFCFPIICG 482

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                L +G AR+  P  LIL PTREL+ Q+ +  +K+     L V +  GG P   Q +
Sbjct: 483 ILRNQLSRGGARLACPTALILSPTRELSCQIHEEAKKFSYKTGLKVVVAYGGAPISQQFR 542

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LERG D+L+ TPGR++D   R ++ +  I+ L +DEADRMLDMGF P I+ I   +   
Sbjct: 543 NLERGVDILVATPGRLVDMIERARVSLRMIKYLALDEADRMLDMGFEPQIRKIVEQMDMP 602

Query: 178 R----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
                QT+LFSAT  +E+Q+++ +FL N   + V    S+ + I            +   
Sbjct: 603 PPGARQTMLFSATFPNEIQRLAADFLSNYIFLSVGRVGSSTDLIVQRVEFVEDTDKRYHL 662

Query: 234 LLQQLLQSQDTMKN----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           +     Q  +         ++F   K+ V  L   L   G +  AIHG+  Q  R + L 
Sbjct: 663 MDLLQSQMTNRTPKKYALTLVFVETKRGVDALEQWLCMNGLAATAIHGDKVQMERERALK 722

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK G   +MVA+D+AARGLDIP V HV NFD+P   ++Y+HRIGRTGRAG+ G A    
Sbjct: 723 SFKSGATPIMVATDVAARGLDIPHVAHVINFDLPKAIDDYVHRIGRTGRAGKSGLATAFF 782

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDL 375
              ++    ++ +L+++    +   L
Sbjct: 783 NDGNLSLAKSLVELMQESNQEVPSWL 808


>gi|225445460|ref|XP_002285108.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 615

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 139/386 (36%), Positives = 207/386 (53%), Gaps = 13/386 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           FA++ L   +   +    YVKPTPIQ   IP+ +   D+   AQTG+GKTA+F  P++  
Sbjct: 135 FAEIHLGEGLNQNIRRCKYVKPTPIQRHAIPIAMAGRDLMACAQTGSGKTAAFCFPIICG 194

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                L +G AR+  P  LIL PTREL+ Q+ +  +K+     L V +  GG P   Q +
Sbjct: 195 ILRNQLSRGGARLACPTALILSPTRELSCQIHEEAKKFSYKTGLKVVVAYGGAPISQQFR 254

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LERG D+L+ TPGR++D   R ++ +  I+ L +DEADRMLDMGF P I+ I   +   
Sbjct: 255 NLERGVDILVATPGRLVDMIERARVSLRMIKYLALDEADRMLDMGFEPQIRKIVEQMDMP 314

Query: 178 R----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
                QT+LFSAT  +E+Q+++ +FL N   + V    S+ + I            +   
Sbjct: 315 PPGARQTMLFSATFPNEIQRLAADFLSNYIFLSVGRVGSSTDLIVQRVEFVEDTDKRYHL 374

Query: 234 LLQQLLQSQDTMKN----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           +     Q  +         ++F   K+ V  L   L   G +  AIHG+  Q  R + L 
Sbjct: 375 MDLLQSQMTNRTPKKYALTLVFVETKRGVDALEQWLCMNGLAATAIHGDKVQMERERALK 434

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK G   +MVA+D+AARGLDIP V HV NFD+P   ++Y+HRIGRTGRAG+ G A    
Sbjct: 435 SFKSGATPIMVATDVAARGLDIPHVAHVINFDLPKAIDDYVHRIGRTGRAGKSGLATAFF 494

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDL 375
              ++    ++ +L+++    +   L
Sbjct: 495 NDGNLSLAKSLVELMQESNQEVPSWL 520


>gi|116671331|ref|YP_832264.1| DEAD/DEAH box helicase domain-containing protein [Arthrobacter sp.
           FB24]
 gi|116611440|gb|ABK04164.1| DEAD/DEAH box helicase domain protein [Arthrobacter sp. FB24]
          Length = 585

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 134/400 (33%), Positives = 208/400 (52%), Gaps = 7/400 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  +   +V ++ DAG   P PIQ  T+P+ L  HD+ G A+TGTGKT  F +P L 
Sbjct: 38  SFADYNVRADIVESLADAGITHPFPIQAMTLPVALAGHDIIGQAKTGTGKTLGFGIPALQ 97

Query: 62  ILEKGRARVRM-------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L++ PTRELA QVA + E   +  N  +A + GG  +E 
Sbjct: 98  RVVGRDDPGFDKLAVPGAPQALVIVPTRELAVQVAKDLENAARKRNARIATIYGGRAYEP 157

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L++G ++++ TPGR++D + +  L + N++I+++DEAD MLD+GF+P ++ + +  
Sbjct: 158 QVDSLQKGVEIVVGTPGRLIDLYKQKHLSLKNVKIVILDEADEMLDLGFLPDVETLIAGT 217

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQTLLFSATM   +  ++  ++  P  I    P     T        Y  +S     
Sbjct: 218 PAVRQTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDEGLTKRDIRQLIYRAHSMDKIE 277

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +         IIF   K+    +   L  +GF+  AIHG++ Q +R + L  F+  
Sbjct: 278 VVARILQARGRGRTIIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRNN 337

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+      + Y+HR+GRTGRAG  G A T V  +D+
Sbjct: 338 KVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWDDM 397

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
                I K +   V       SS     E++DI +    R
Sbjct: 398 PRWGLINKALGLSVPEPVETYSSSPHLYEELDIPEGTKGR 437


>gi|71021341|ref|XP_760901.1| hypothetical protein UM04754.1 [Ustilago maydis 521]
 gi|46100997|gb|EAK86230.1| hypothetical protein UM04754.1 [Ustilago maydis 521]
          Length = 1448

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 121/453 (26%), Positives = 221/453 (48%), Gaps = 14/453 (3%)

Query: 2    DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
             +++L     ++  +   +   G+  PT IQ  T+P++L   D+   A TG+GKT +F+L
Sbjct: 991  SWSELEARFNVASWLRTNLEKCGWAVPTAIQKGTMPVLLANRDLLAGAPTGSGKTLAFLL 1050

Query: 58   PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            P++  L     R    R +I+ PTRELA Q+ D   +  +  N  + +L       A   
Sbjct: 1051 PLIHHLRTPC-RKEHFRAVIVSPTRELAQQIYDQLRRLSEGQNFRICVLTSTSDATAVAN 1109

Query: 118  K------LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
                     +  DVLI TP R++    + ++ ++N+  LV+DEADR+L+ GF+    +I 
Sbjct: 1110 SSSADASKRKKYDVLITTPLRLVHAIEKEQVELSNVRHLVLDEADRLLEDGFLQQTDSIL 1169

Query: 172  SLVPFTRQTLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +     +     FSAT+   ++++++ F+ +  R+ V T  S  ETI+       ++  K
Sbjct: 1170 AACSHPQLRKALFSATLPAGVEEMAKTFMIDECRVIVGTKDSATETIQQELQFVGSEDGK 1229

Query: 231  KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
                L+ L+         ++F    +   +L H L   G  V  IH    +  R +++S 
Sbjct: 1230 -LHALRSLILQGGLKPPVLLFVQSIERAKDLFHELVYDGLHVDVIHSERPKLQRERVISA 1288

Query: 291  FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
            FK G I +++ ++L ARG+D   V  V N+D P   ++YIHRIGRTGRAG+ G+A T   
Sbjct: 1289 FKRGDIWVLICTELMARGIDFKGVQLVINYDFPQSVQSYIHRIGRTGRAGKQGRAITYFT 1348

Query: 351  KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            KED  H+  +  ++ +    +   + +L  P +K   +  N+A +   I + S      +
Sbjct: 1349 KEDAPHLKTVVNVMRQSGCEVPEWMLALKNPGKKDRKSLKNNAPERKHI-RTSAASSVGR 1407

Query: 411  KNYSSQKSHIPLKESEKISKLQQDIQENDADSL 443
            +  + +K  I   +  K+++ + + +    + +
Sbjct: 1408 RQANKRKEMIAASKRRKLAEREDNDKGKAKEKV 1440


>gi|119505184|ref|ZP_01627259.1| RNA helicase DbpA [marine gamma proteobacterium HTCC2080]
 gi|119458875|gb|EAW39975.1| RNA helicase DbpA [marine gamma proteobacterium HTCC2080]
          Length = 465

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 135/365 (36%), Positives = 205/365 (56%), Gaps = 6/365 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  + A+   GY   T +Q +++P +L+R DV   A+TG+GKTA+F + +L  
Sbjct: 6   FSSLPLNPAQLDALTGLGYANMTQVQAQSLPPILKRQDVIIQAKTGSGKTAAFAIGLLHH 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLER 121
           L     R    + +++ PTRELA QV +   +     +    +++ G  PF AQ   L  
Sbjct: 66  LNP---RFFGVQAVVMCPTRELAEQVGEATRQLASRMSNVKVVMLCGGKPFGAQRDSLHH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI DH  RG L +  +   V+DEADRMLDMGF   +  IT+ +P  RQTL
Sbjct: 123 GAHIVVGTPGRIQDHLQRGTLELKGVTTFVLDEADRMLDMGFADVMAEITAKLPADRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT  D+++K+S +  +NP +I V+      E +         ++ +  A     L  
Sbjct: 183 LLSATFPDDIKKISRSIQKNPIQITVDAEVVHDEVVLEQVFFEVQKHERNVA--LLALFE 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                N ++FCN KK    +   L +      AIHG+++QR R ++L  F   +  ++VA
Sbjct: 241 HYRPANAMVFCNTKKQCAEVARFLREHDIEAAAIHGDLEQRERDQVLLQFANNSCPVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDIP +  V NF++P  A+ Y+HRIGRTGRAG  GKAF++V   +   +  IE
Sbjct: 301 SDVAARGLDIPSLEMVVNFELPRDADTYVHRIGRTGRAGESGKAFSIVTPPEAPRMRVIE 360

Query: 362 KLIEK 366
             ++ 
Sbjct: 361 DYLKT 365


>gi|109896916|ref|YP_660171.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas atlantica T6c]
 gi|109699197|gb|ABG39117.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas atlantica T6c]
          Length = 459

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 139/370 (37%), Positives = 209/370 (56%), Gaps = 8/370 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ LGL   ++  +   G+ + T IQ  T+P +L+  DV   A+TG+GKTA+F L +L 
Sbjct: 4   EFSSLGLEAALLDNLQSMGFSQMTEIQAGTLPAILEGRDVVAKAKTGSGKTAAFGLALLH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+  R RV+    L++ PTRELA QVA    + G+  +    L +  G P   Q   LE
Sbjct: 64  NLDVKRFRVQ---ALVMCPTRELAEQVALEIRRLGRGIHNIKVLTLCGGTPMGPQIGSLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRI+DH  + +L ++ +  LV+DEADRMLDMGF   +  +   VP  RQT
Sbjct: 121 HGAHIIVGTPGRIMDHLYKRRLDLSEVNTLVLDEADRMLDMGFEDEMDAVIKSVPEQRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D +  +S    ++P  + V +   T    +  F    A  +K  A L     
Sbjct: 181 LLFSATYPDSIAAISGQVQKSPLEVTVESTHDTDTIEQVFFEVEDAHRTKAVAALL---- 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S    ++ I+FCN K     +   L+  G SV A+HG+++QR R ++L  F   +  ++V
Sbjct: 237 SHYQPESAIVFCNTKIACQEVADELQSMGVSVLALHGDLEQRERNQVLVRFANKSASVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI +V  V ++ +    E +IHRIGRTGRA   G A TLVA +++   +AI
Sbjct: 297 ATDVASRGLDIKEVNAVISYHITPDPEVHIHRIGRTGRAESKGVALTLVAPDEMARANAI 356

Query: 361 EKLIEKKVDW 370
           E   + K+ W
Sbjct: 357 EDYQKAKLKW 366


>gi|198462622|ref|XP_002135340.1| GA28491 [Drosophila pseudoobscura pseudoobscura]
 gi|198150906|gb|EDY73967.1| GA28491 [Drosophila pseudoobscura pseudoobscura]
          Length = 537

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 125/381 (32%), Positives = 203/381 (53%), Gaps = 5/381 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--ML 60
           F ++      +  +    Y +PTPIQ +  P+ L  H++ GIA+TG+GKT +F+LP  + 
Sbjct: 105 FEEVCFPDYCMEEIRRQRYSEPTPIQAQAWPIALSGHNLVGIAKTGSGKTLAFILPAILH 164

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              ++   R   P  L+L PTRELA Q+      +G +  +    + GG P   Q   L+
Sbjct: 165 INGQQPLQRGEGPIALVLAPTRELAQQIQSVANDFGSSAFVRNTCVFGGAPRSKQASDLK 224

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR+LD    G   +     LV+DEADRMLDMGF P I+ +   +   RQ 
Sbjct: 225 RGVEIIIATPGRLLDFLQSGATNLRRCTYLVLDEADRMLDMGFEPQIRKVLGQIRPDRQI 284

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ---Q 237
           L++SAT   E+++++E+FL +  +I + +   +A      +V    ++ K   L      
Sbjct: 285 LMWSATWPKEVRQLAEDFLGSYIQINIGSLELSANHNIRQYVEVCGEHEKSAKLKDLLSH 344

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +          IIF   KK    L   +   G SV +IHG+  Q  R  +L++F+ G   
Sbjct: 345 IYDQAHAPGKIIIFVATKKKTDELARFINAFGVSVGSIHGDKSQMDRDSVLNDFRSGRAN 404

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR    G ++    +++ +  
Sbjct: 405 ILVATDVAARGLDVDGIKYVINFDYPQSSEDYIHRIGRTGRKLSKGTSYAFFTRKNARCA 464

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
            A+  ++ +    +N +L +L
Sbjct: 465 RALIDILREANQNVNPELENL 485


>gi|332532397|ref|ZP_08408275.1| cold-shock DEAD-box protein A [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038040|gb|EGI74487.1| cold-shock DEAD-box protein A [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 592

 Score =  146 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 150/437 (34%), Positives = 239/437 (54%), Gaps = 44/437 (10%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
            GY  P+ IQ + IPL+L+R DV G+AQTGTGKTA+F LP+L  ++     V+ P+ L+L
Sbjct: 1   MGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLLNNIDPS---VKQPQILVL 57

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLERGADVLICTPGRILDHF 137
            PTRELA QVA+ FE+Y K+      L + G   +  Q   L RGA V++ TPGR++DH 
Sbjct: 58  TPTRELAIQVAEAFEQYAKHVRGIEVLALYGGQSYSIQLSALRRGAQVIVATPGRLIDHI 117

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
           NRG +  + ++ LV+DEAD ML MGFI  +++I    P  +QT LFSATM  ++Q +S  
Sbjct: 118 NRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPREKQTCLFSATMPKQIQNISSK 177

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
           ++ NP+++ ++  +ST  ++E  F       +K      +  Q +      I+F   + +
Sbjct: 178 YMNNPEQVHISARNSTVSSVEQVFWNASVHKNKAIVRFLEAEQYE----GAIVFVRTRND 233

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
            V L   LE++GFS   ++G+++Q++R + +   K G + +++A+D+AARGLD+  +  V
Sbjct: 234 TVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNIVIATDVAARGLDVDRLSLV 293

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI------------- 364
            N+D+P  +E Y+HRIGRTGRAGR GKA   V   +   +  I +               
Sbjct: 294 INYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIRHTKSEIAQVELPTAK 353

Query: 365 ---EKKVDWLNGDL--------------------SSLNPPLEKIDIAQHNHARKNNPIPQ 401
              EK+++ L   L                      L+ PLE +  A    A++ +PI  
Sbjct: 354 IVEEKRIEALQAKLTIALENKDITFFNEVATNMAEKLDLPLESLAGALLCLAQQQSPIKV 413

Query: 402 KSTGFDRRKKNYSSQKS 418
           +      R++N  + ++
Sbjct: 414 EEVKIQPRERNERNDRN 430


>gi|319788359|ref|YP_004147834.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466871|gb|ADV28603.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 579

 Score =  146 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 125/392 (31%), Positives = 215/392 (54%), Gaps = 8/392 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L P+++  +  AG+ + TPIQ  T+P+ L+  DV G AQTGTGKT +F++ ++
Sbjct: 10  VTFSSFDLHPELLAGLESAGFTRCTPIQALTLPVALRGGDVAGQAQTGTGKTLAFLVAVM 69

Query: 61  TILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L         +   PR LIL PTRELA Q+  +  K+G    L  AL+ GG+ ++ Q 
Sbjct: 70  NRLLTRPALAERKPEDPRALILAPTRELAIQIHKDAVKFGSQLGLRFALVYGGVDYDKQR 129

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIE-ILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L++G DV+I TPGR++D+  + K++  +   + V+DEADRM D+GFI  I+ +   +P
Sbjct: 130 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEMCVLDEADRMFDLGFIKDIRFLLRRMP 189

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              +      + T   + +   +    +  ++   + T  T        Y    ++   L
Sbjct: 190 VRTERQTLLFSATLSHRVLELAYEHMNEPEKLVVETETI-TAARVRQRLYYPSDEEKLPL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L S+      ++F N K  V  +  +LEK G+ V  + G++ Q+ R  +L+ F++G 
Sbjct: 249 LLGLLSRSEGARTMVFVNTKVFVERVARALEKAGYRVGVLSGDVPQKKRETLLNRFQKGQ 308

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  + +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 309 LEILVATDVAARGLHIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 368

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKI 385
            +  IE  IE+K+  + +  +L +  P  E++
Sbjct: 369 SLPDIEAYIEQKIPSEPVTAELLTPLPRPERV 400


>gi|296158936|ref|ZP_06841764.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295890811|gb|EFG70601.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 539

 Score =  146 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 141/389 (36%), Positives = 213/389 (54%), Gaps = 24/389 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLS  VV A+  AGY  PTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 52  SFASLGLSADVVSALTAAGYQNPTPVQQRAIPAGIAGRDLMVSSPTGSGKTAAFMLPAIE 111

Query: 62  ILEK---------------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN 100
              +                         V  P  L+L PTRELA QV      YGK+  
Sbjct: 112 RFSQLQKAQAGQPREPRPADGARTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLK 171

Query: 101 L-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159
                 ++GG+ +  Q   L +  ++L+ TPGR++DH  RG++ ++ ++ILV+DEADRML
Sbjct: 172 RLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRML 231

Query: 160 DMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
           DMGFI  I+ I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+         I  
Sbjct: 232 DMGFIEDIETIVAATPATRQTMLFSATLDGKITSLTGRLLKDPERIEIVQRLEQRTNIAQ 291

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                  +  K    L   L   + +   I+F   K +   L   L   GF   A+HG++
Sbjct: 292 TVHYVDDRDHKDR--LLDHLLRDEGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDL 349

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTGRA
Sbjct: 350 PQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRA 409

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           GR G A +LV   +   +  IE+ +   +
Sbjct: 410 GRSGIAVSLVHHAEQGALKRIERFVRAPL 438


>gi|212710051|ref|ZP_03318179.1| hypothetical protein PROVALCAL_01104 [Providencia alcalifaciens DSM
           30120]
 gi|212687258|gb|EEB46786.1| hypothetical protein PROVALCAL_01104 [Providencia alcalifaciens DSM
           30120]
          Length = 468

 Score =  146 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 132/373 (35%), Positives = 215/373 (57%), Gaps = 9/373 (2%)

Query: 2   DFADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            FADL  L  + +  + + G++  TPIQ   +P +L   DV   A+TG+GKTA+F L +L
Sbjct: 14  SFADLNALPAEQLSNLNELGFITMTPIQEAALPAILAGKDVRAQAKTGSGKTAAFGLGLL 73

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++    +    ++L+L PTRELA QVA+   +  +       L + G +PF  Q   L
Sbjct: 74  QRIDA---KNFNTQSLVLCPTRELADQVANELRRLARYIPNLKILTLCGGVPFSVQRDSL 130

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              A +L+ TPGR+LDH ++  + +++++ LV+DEADRMLDMGF   I  + S  P  RQ
Sbjct: 131 VHAAHILVATPGRLLDHLHKETVQLDHLQTLVLDEADRMLDMGFADDIDAVISFTPEDRQ 190

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  D +  +S+   +NP  IE+N+ +   +  +  +             L Q L
Sbjct: 191 TLLFSATWPDSIAAISQRIQKNPLTIEINSVNELPDVEQQFYEVARHDK----IDLLQKL 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S++   + ++FCN KK+   +  +L     SV  +HG+++QR R + L  F  G+ +++
Sbjct: 247 LSREQPASCVVFCNTKKDCQAVYDALMDSNQSVLVLHGDMEQRDRDQTLVRFANGSSRVL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI  +  V NF++    E ++HRIGRT RAG+ G A +L + E+ +  + 
Sbjct: 307 VATDVASRGLDIKALEMVINFELSWDPEVHVHRIGRTARAGKSGLAISLCSPEEAQRANV 366

Query: 360 IEKLIEKKVDWLN 372
           +E+++  K++WL 
Sbjct: 367 LEEMLNIKLNWLP 379


>gi|183598940|ref|ZP_02960433.1| hypothetical protein PROSTU_02380 [Providencia stuartii ATCC 25827]
 gi|188021152|gb|EDU59192.1| hypothetical protein PROSTU_02380 [Providencia stuartii ATCC 25827]
          Length = 457

 Score =  146 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 132/371 (35%), Positives = 210/371 (56%), Gaps = 9/371 (2%)

Query: 2   DFADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            FA+L  L  + +  + + GYV  TPIQ   +P +L   DV   A+TG+GKTA+F L +L
Sbjct: 3   SFAELNTLPEEQLANLTELGYVTMTPIQEAALPAILAGKDVRAQAKTGSGKTAAFGLGLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++    +    ++L+L PTRELA QVA    +  +       L + G +PF  Q   L
Sbjct: 63  QHIDA---KQFSTQSLVLCPTRELADQVASELRRLARYMANIKILTLCGGVPFSVQRDSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              A +++ TPGR+LDH N+  + ++ ++ LV+DEADRMLDMGF   I  + S  P +RQ
Sbjct: 120 IHAAHIIVATPGRLLDHLNKETVKLDTLQTLVLDEADRMLDMGFADDIDEVISYAPISRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  + +  +S+   +N   IE+N+        +  +     +       L Q L
Sbjct: 180 TLLFSATWPETITAMSQRIQRNAITIEINSVDELPAIEQRFYEVARHEK----IDLLQKL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            SQ    + ++FCN KK+   +  +L +   SV  +HG+++QR R + L  F  G+ +++
Sbjct: 236 LSQQQPASCVVFCNTKKDCQAVYDALNECHQSVLVLHGDMEQRERDQTLVRFANGSSRVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +L A E+ +  + 
Sbjct: 296 VATDVAARGLDIKSLDMVINYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRANV 355

Query: 360 IEKLIEKKVDW 370
           +E+++  K++W
Sbjct: 356 LEEMLNIKLNW 366


>gi|325115216|emb|CBZ50771.1| dead box polypeptide 27, related [Neospora caninum Liverpool]
          Length = 462

 Score =  146 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 115/430 (26%), Positives = 188/430 (43%), Gaps = 8/430 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ LGL  ++  +V   G+  PT IQ + +P  LQ  D+  +A+TG+GKTA+F LP+L 
Sbjct: 34  TFSSLGLCAELCASVSTLGWRAPTAIQSEVLPYALQGRDIIALAETGSGKTAAFGLPILQ 93

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R      LIL PTREL  Q++      G +  +TV  L+GG+    Q   L +
Sbjct: 94  QLLQRTQRFYA---LILAPTRELCLQISQQMLAMGGSLGVTVVTLVGGLDHNTQAIALAK 150

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ +PGR++DH  + K        +++ +    L          +      +    
Sbjct: 151 KPHVVVGSPGRVVDHLQQTKGFSLKSVKVLVLDEADRLLSLDFDAALQVLLEHVGSPAER 210

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
                      KVS+    + K+      +S  +              K           
Sbjct: 211 QTMLFSATMTTKVSKLQKASLKKPVKLEVNSKYDVASLLQQHFLLVPFKLKHTHLAAALL 270

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             +  + I+F N   N   +   L   GF    +HG + Q  R+  L+ F+      +VA
Sbjct: 271 HLSPSSVIVFTNTCANARTIALFLRHLGFQSVCLHGKMTQPQRIGALTKFRAAETSCLVA 330

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +++ +RGLDIP V  V NFDVP  ++ YIHR+GRT RAGR G+A T+V + D++    IE
Sbjct: 331 TEVGSRGLDIPHVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALTIVTQYDVEAYQRIE 390

Query: 362 KLIEKKVDWLNG--DLSSLNPPLEKIDIA---QHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
             + +K+D L        + P  EK+  A       AR+ +          +++   S +
Sbjct: 391 HALGQKLDELTELTATEKVMPLHEKVLEALRSAELEAREADDAALVQKAAKKKRGAGSKR 450

Query: 417 KSHIPLKESE 426
                 K+ +
Sbjct: 451 PPGAGGKKRK 460


>gi|239827745|ref|YP_002950369.1| DEAD/DEAH box helicase [Geobacillus sp. WCH70]
 gi|239808038|gb|ACS25103.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. WCH70]
          Length = 435

 Score =  146 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 136/444 (30%), Positives = 220/444 (49%), Gaps = 23/444 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ A+ +  + KPT IQ + IP +L+   V G +QTGTGKT +++LP++  
Sbjct: 6   FERFSFQPFIIEAIKELRFYKPTEIQERIIPSILRGESVIGQSQTGTGKTHAYLLPIIEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVAD----NFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           ++     V+     I  PTRELA Q+        +    +  +T    IGG   +   +K
Sbjct: 66  IDPDHEAVQAV---ITAPTRELATQIYHEILKIIKFCPSDRQITARCFIGGTDKQKAIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+    +++ TPGRI D      L +     LV+DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LKTQPHIVVGTPGRINDLIREQALNVWTATTLVVDEADLMLDMGFIVDVDQIAARMPKEL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+   + +++NPK + V     TAE I           S+  A L   
Sbjct: 183 QMLVFSATIPEKLKPFLKKYMENPKYVHVAPKQVTAEKI---EHVLVPLRSRDKAKLLHE 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +         I+F N KK    +   L ++G  V  +HG++  R R K++   ++   Q 
Sbjct: 240 MLVAYNPYLAIVFTNTKKMADEVADRLIEKGMKVGILHGDLTPRERKKMMRQIRDLEFQY 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N+++P   + YIHR+GRT RAG  G A T+    D    D
Sbjct: 300 IVATDLAARGIDIEGVSHVINYELPKDLQFYIHRVGRTARAGYTGIATTIYEPSDQ---D 356

Query: 359 AIEKLIEKKVDWLNGDL-----SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           AI KL +  +++L+ DL       L P        +   A+++  I Q      + K+  
Sbjct: 357 AITKLEKMGIEFLHRDLIRGEWVDLPPW-----NRRSKRAKQDGEIEQLLAKMKKSKQIK 411

Query: 414 SSQKSHIPLKESEKISKLQQDIQE 437
              K  +  +  ++  +L++  ++
Sbjct: 412 PGYKKKLLAEIEKQKKRLRRLKKQ 435


>gi|189193121|ref|XP_001932899.1| ATP-dependent RNA helicase HAS1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187978463|gb|EDU45089.1| ATP-dependent RNA helicase HAS1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 606

 Score =  146 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 116/379 (30%), Positives = 193/379 (50%), Gaps = 6/379 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA+L LS +   A+   G+   T IQ K IP +L   DV G A+TG+GKT +F++P + 
Sbjct: 128 EFAELNLSERTRQAIDGMGFKTMTEIQQKAIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 187

Query: 62  ILEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L + R + R    +I+  PTRELA Q+     +  ++++ T  + IGG    A+  KL 
Sbjct: 188 MLSQLRFKPRNGTGVIVVSPTRELALQIFGVARELMEHHSQTFGICIGGANRSAEADKLR 247

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G ++LI TPGR +    N    +  N+  LVIDEADR+L++GF   +++I  ++P  RQ
Sbjct: 248 KGVNLLIATPGRLLDHLHNTQGFVFKNLRSLVIDEADRILEVGFEDEMRSIIKILPTERQ 307

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT T +++ ++   L+           +   T++          S     L    
Sbjct: 308 TMLFSATQTTKVEDLARISLKAGPLYINVDHRAEHSTVQGLEQGYVLCDSDTRFRLLFSF 367

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   K  I+F +   +V      L      V  +HG + Q++R      F       +
Sbjct: 368 LKKHQKKKVIVFLSSCASVDFYSELLNYIDLPVLGLHGKLKQQARTNRFFEFVNAQSGTL 427

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKHID 358
           + +D+AARGLDIP+V  V  FD P+   +YIHR+GRT R A   G++   +   ++  + 
Sbjct: 428 ICTDVAARGLDIPEVDWVIQFDPPDDPRDYIHRVGRTARGANGKGRSLMFLLPSEVGFLK 487

Query: 359 AIEKLIEKKVDWLNGDLSS 377
            ++   E +V  +  +L +
Sbjct: 488 LLK---ESRVPLVEFELPA 503


>gi|146161201|ref|XP_976799.2| Type III restriction enzyme, res subunit family protein
           [Tetrahymena thermophila]
 gi|146146830|gb|EAR86204.2| Type III restriction enzyme, res subunit family protein
           [Tetrahymena thermophila SB210]
          Length = 668

 Score =  146 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 105/460 (22%), Positives = 204/460 (44%), Gaps = 22/460 (4%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           +F  +    G + K++  +  AGY KPTPIQ++++P+++++ ++  +A TG+GKTA++ L
Sbjct: 206 NFTKMQKKYGFNQKILDNMKKAGYEKPTPIQMQSVPIIMEKRNLLALAPTGSGKTAAYCL 265

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           P+L  L   +                        F  YG    L +  +          K
Sbjct: 266 PLLQKLGTHQKNGVRALIFAPSNELAEQILREFEFLNYGVEDGLRIKQIQKINNESNAFK 325

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 D+LI TP + +    +     + +E +V DEADR  +      ++ I       
Sbjct: 326 IQLEHIDILITTPLKFIKMNRKSHTEFDKLEYIVFDEADRYFEFNIAGQMKRILETFQEK 385

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
           +      FSAT+   ++++ +N + +P ++++   ++   +IE       ++Y K   L 
Sbjct: 386 QGLTYLLFSATIQHPVEELVKNIIVDPLKLQIGGKNNVLASIEQSLSYCQSEYGKLVELK 445

Query: 236 QQLLQSQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             +   +      I   ++++    +  +  S       +  I  +  +  R +++ +F+
Sbjct: 446 NIINNGEFNPPVLIFVQSKERGEELLSMIKSSCVNTPIKIEKIDSDKQKEEREEVIEDFR 505

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G +  ++ +DL ARG+D   V  V N+D P    NYIHR+GRTGRAGR G+A T    E
Sbjct: 506 TGKLWALICTDLMARGIDFKGVNLVINYDFPTTMINYIHRVGRTGRAGRTGRAITFFTNE 565

Query: 353 DIKHIDAIEKLIEKK----VDWL----NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           D   + ++  +++       +W+      D  +L   LEK  + +   +   +   +K  
Sbjct: 566 DKPLLRSLGNMLKVSGCDVPEWIFKLQKADKKTLKR-LEKFPVKRDAISLDPSKQKEKDL 624

Query: 405 GFDRRKK----NYSSQKSHIPLKESEKISKLQQDIQENDA 440
            F+++ +     Y S+K  I  +E  K  + Q    E+D 
Sbjct: 625 EFEKQIRIADGQYFSRKKKIDREERRKQQQNQGKENEDDG 664


>gi|146104251|ref|XP_001469775.1| DEAD box RNA helicase [Leishmania infantum]
 gi|134074145|emb|CAM72887.1| putative DEAD box RNA helicase [Leishmania infantum JPCM5]
 gi|322503545|emb|CBZ38631.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 527

 Score =  146 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 137/457 (29%), Positives = 240/457 (52%), Gaps = 6/457 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL  ++  A  DAG+  PT IQ   I +  +  D+ G+AQTG+GKT ++ LP++ 
Sbjct: 54  TFQDLGLCQELCTACADAGWQHPTRIQASAITVFAEGRDLIGVAQTGSGKTGAYALPLVN 113

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   + +      L++ PTRELA QV   F   G++  L VA L+GG     Q  +L +
Sbjct: 114 WL-LAQRKTPYLSVLVMVPTRELAQQVTAQFVLLGRSVGLRVATLVGGADMVEQACELSK 172

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR+ DH  N     +  +  LV+DEAD+MLDM +   I  I   +P  R+T
Sbjct: 173 RPHVVVGTPGRVKDHLSNTKGFKLVKLHALVLDEADKMLDMDYEKEIDAILEQLPQNRRT 232

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT++ ++ ++ +  L++P  ++V+  ++T +T++  ++        +      L  
Sbjct: 233 MLFSATLSTKIDRLQKASLRDPVLLQVHRKNTTVDTLKQYYIFAPFA---QMLSYLHLFL 289

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++T  + +IFC     V  +  +L   G     + G +DQ +R   L+ FKEG +++++
Sbjct: 290 TKETGNHILIFCRSAALVHKITLTLRILGHRALPLMGRMDQSNRNIALTKFKEGKVRMLI 349

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A RGLDIP    V NF +P+  E+YIHR+GRT RAG  GKA  L+++ DI  +  I
Sbjct: 350 CTDVAQRGLDIPHTDVVVNFSLPDHVEDYIHRVGRTARAGAEGKAVNLISQYDIVLLQKI 409

Query: 361 EKLIEKK-VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           E+    K V++     S +   L++++ A+    R+     ++ +     ++  +++K  
Sbjct: 410 EQQTGVKCVEYPFLPESEVQLVLQRVEDAEQEAIREIREDAEERSLEKESRQLTTARKGK 469

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPK 456
               +++      +    + A     R +   F + K
Sbjct: 470 RDRGDADMGYDDAKHGTSDFATLRMRREHESIFEMTK 506


>gi|110289358|gb|ABG66172.1| ATP-dependent RNA helicase ste13, putative, expressed [Oryza sativa
           Japonica Group]
          Length = 362

 Score =  146 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 113/362 (31%), Positives = 185/362 (51%), Gaps = 7/362 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
            + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P L  ++         +
Sbjct: 2   GIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDP---EKNAIQ 58

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            +IL PTRELA Q +   ++ GK  N+ V +  GG   +    +L +   +L+ TPGRIL
Sbjct: 59  VVILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQPVHLLVGTPGRIL 118

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D   +G  ++ +  +LV+DEAD++L   F P I+ +   +P  RQ L+FSAT    ++  
Sbjct: 119 DLTRKGICVLKDCSMLVMDEADKLLAPEFQPSIEQLIHFLPANRQLLMFSATFPVTVKDF 178

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
            E +L  P  I          T++           ++       L S+  +   IIFCN 
Sbjct: 179 KEKYLPRPYVI----NLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNS 234

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
              V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V +DL  RG+DI  V
Sbjct: 235 VNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAV 294

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
             V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE+ +  ++  +   
Sbjct: 295 NVVINFDFPKTSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKTIPPQ 354

Query: 375 LS 376
           + 
Sbjct: 355 ID 356


>gi|300783976|ref|YP_003764267.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
 gi|299793490|gb|ADJ43865.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
          Length = 534

 Score =  146 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 133/359 (37%), Positives = 197/359 (54%), Gaps = 5/359 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGL   ++ A+ +AG   P PIQ  TIP  L   DV G AQTG+GKT +F L ML 
Sbjct: 45  TFAELGLPEPLLRALSEAGINSPFPIQSATIPDALAGRDVLGRAQTGSGKTLAFGLAMLA 104

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L  G+AR + PR LIL PTRELA QVAD+     K+  L     +GG+ F  Q   L R
Sbjct: 105 RLADGKARPKRPRALILVPTRELAMQVADSLTPLAKSLGLWCRTAVGGMAFARQADALSR 164

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+LI TPGR+ DH  +G   + +   + +DEAD+M DMGF+P ++ I  L P   Q L
Sbjct: 165 GVDLLIATPGRLSDHVRQGTAHLGDCNFIALDEADQMADMGFMPQVREIMDLTPQGGQRL 224

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ ++ + +L +P    V   +++  T++H  +    Q  +           
Sbjct: 225 LFSATLDGDVNRLVKQYLSDPVTHSVAPSTASVTTMDHHVLQVSHQDKQDVITQI----- 279

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K +V  L   L +QG +  A+HG   Q  R ++L++FKEG   ++VA
Sbjct: 280 GARDGRTIMFVRTKHHVDRLAERLREQGVNAAALHGGKTQGQRNRVLADFKEGHTPVLVA 339

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +D+AARG+ + D+  V + D     ++Y+HR GRT RAG  G   T+   +  + +  +
Sbjct: 340 TDVAARGIHVDDISLVLHVDPAADHKDYLHRAGRTARAGASGVVVTVATHDQRRMVRRL 398


>gi|240275036|gb|EER38551.1| ATP-dependent RNA helicase DBP4 [Ajellomyces capsulatus H143]
          Length = 811

 Score =  146 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 117/458 (25%), Positives = 200/458 (43%), Gaps = 18/458 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL LS      +    +   T IQ + IP  L+  D+ G A+TG+GKT +F++P+L +
Sbjct: 51  FSDLPLSEPTADGLSACHFKSLTDIQARAIPYALKGRDILGAAKTGSGKTLAFLVPLLEL 110

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         L+L PTRELA Q+ +   K G+++  +  L+IGG   + + ++L +
Sbjct: 111 LYRKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHTFSAGLVIGGKGLQEEQERLGK 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +           N+I++LV+DEADR++DMGF   +  I   +P  RQT+
Sbjct: 171 MNILVCTPGRMLQHMDQTAAFDTNHIQLLVLDEADRIMDMGFQSTVDAIIDHLPKERQTM 230

Query: 182 LFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT T ++      +           T +S                 K   L   +  
Sbjct: 231 LFSATQTKKVSDLARLSLRDPEYVSVHETAASATPAKLQQNYIITPLPEKLDTLWSFIRS 290

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S  +         ++   V       + G  +  +HG   Q +R+ I   F       + 
Sbjct: 291 SLKSKIIVFFSSGKQVRFVYESFRHMRPGIPLLHLHGRQKQGARVDITKKFSAAKYACLF 350

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD P V  V   D P  A+ YIHR GRT R  R+G+A   +   +      +
Sbjct: 351 ATDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFLEPSE--EAGML 408

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           ++L +KK+            P+EKI++         N +  ++  F      Y  QK+ I
Sbjct: 409 KRLEQKKI------------PIEKINVRSKKQQSIKNQL--QNMCFKDPSLKYLGQKAFI 454

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
              +S  + + ++     D     +  ++     P+ +
Sbjct: 455 SYVKSIHVQRDKEVFVVKDLPLQEYAASLGLPGAPRIK 492


>gi|156049233|ref|XP_001590583.1| hypothetical protein SS1G_08323 [Sclerotinia sclerotiorum 1980]
 gi|160380617|sp|A7ESL8|DBP4_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp4
 gi|154692722|gb|EDN92460.1| hypothetical protein SS1G_08323 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 808

 Score =  146 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 124/460 (26%), Positives = 219/460 (47%), Gaps = 20/460 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++L LS      +  + +   T +Q K +PL L+  D+ G A+TG+GKT +F++P + 
Sbjct: 50  NFSELPLSGPTSSGLEASHFKTLTDVQSKAVPLALKGKDILGAAKTGSGKTLAFLVPVLE 109

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  +    +     LI+ PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L 
Sbjct: 110 NLYRQKWTELDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLIIGGRSLQEERERLG 169

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +          ++N+++LV+DEADR++DMGF   +  I   +P  RQT
Sbjct: 170 RMNILVCTPGRMLQHMDQTAAFDVDNLQMLVLDEADRIMDMGFQTSVDAILEHLPKQRQT 229

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT T ++  ++   L+ P+ + V+  +S+A               +K         
Sbjct: 230 MLFSATQTKKVSDLARLSLKEPEYVAVHEAASSATPTTLQQHYCVVPLPEKL-NTLFGFI 288

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQL 298
             +     I+F +  K V  +  SL      +    +HG   Q +R+ I S F       
Sbjct: 289 RANLKAKIIVFMSSGKQVRFVYESLRHLQPGIPLLHLHGRQKQTARLDITSKFSSSKNSC 348

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+ ARGLD P V  V   D P  A+ YIHR+GRT R G+ G+A   +   + + + 
Sbjct: 349 IFATDVVARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYGKVGRAVLFLDPSEEEGM- 407

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +++L  KKV            P++KI+I  +      N +  ++  F   +  Y  QK+
Sbjct: 408 -LKRLEHKKV------------PIQKINIRPNKTQDIKNQL--QNMCFQDPELKYLGQKA 452

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
            +   +S  + K ++    ND D  G+  ++     PK +
Sbjct: 453 FVSYAKSVFLQKDKEIFNINDIDLEGYASSIGLPGAPKIK 492


>gi|126323154|ref|XP_001366378.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
           [Monodelphis domestica]
          Length = 427

 Score =  146 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 99/383 (25%), Positives = 170/383 (44%), Gaps = 4/383 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY  N  ++V      I  +    K    
Sbjct: 106 IEPVDGQVTVLVMCHTRELAFQISKEYERFSKYMPNVKVSVFFGGLSIKKDEDVLKKNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L N    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 166 HVVVGTPGRILALVRNKSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  V L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCVALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDAKILNDVQ 403

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
              E  V  L  ++  ++  +EK
Sbjct: 404 DRFEVNVAELPEEI-DISTYIEK 425


>gi|22331253|ref|NP_188872.2| PMH2 (putative mitochondrial RNA helicase 2); ATP binding /
           ATP-dependent helicase/ helicase/ nucleic acid binding
           [Arabidopsis thaliana]
 gi|75335516|sp|Q9LUW5|RH53_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 53
 gi|9293867|dbj|BAB01770.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
 gi|17064852|gb|AAL32580.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
 gi|20259816|gb|AAM13255.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
 gi|332643101|gb|AEE76622.1| DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana]
          Length = 616

 Score =  146 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 118/373 (31%), Positives = 207/373 (55%), Gaps = 6/373 (1%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-- 61
           ++LG+SP++V A+   G  K  PIQ   +   ++  D+ G A+TGTGKT +F +P++   
Sbjct: 107 SELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKI 166

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                   R R P  L+L PTRELA QV   F +   + +       GG P   Q ++L+
Sbjct: 167 IKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTICL--YGGTPIGQQMRQLD 224

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV + TPGR++D   RG L ++ ++ +V+DEAD+ML +GF   ++ I   +P  RQ+
Sbjct: 225 YGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQS 284

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSATM   ++ +++ +L NP  +++   S           +  A    + +++  L+ 
Sbjct: 285 MMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVT 344

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K++   L ++   + F   A+HG+I Q  R + L+ F++G   ++V
Sbjct: 345 EHAKGGKCIVFTQTKRDADRLSYA-LARSFKCEALHGDISQSQRERTLAGFRDGHFNILV 403

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+P+V  + ++++PN  E ++HR GRTGRAG+ G A  + +++  + +  I
Sbjct: 404 ATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKII 463

Query: 361 EKLIEKKVDWLNG 373
           E+ +  +   L  
Sbjct: 464 EREVGSRFTELPS 476


>gi|170696968|ref|ZP_02888064.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170138142|gb|EDT06374.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 465

 Score =  146 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 149/422 (35%), Positives = 220/422 (52%), Gaps = 24/422 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GYV  TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 9   FSALPLTPAALANLTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + ++L PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 69  LDT---RRFDVQAMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  + P TRQTL
Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ F     R                    Y     +       L +
Sbjct: 186 LFSATYPDGIAKLSQQF----LRNPKEVKLEERHDNSKIRQRFYEVAETERLHAVGQLLN 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 242 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 361

Query: 362 KLIEKKVDWLN-GDLS-----SLNPPLEKIDIAQHNHARKNNPIP-------QKSTGFDR 408
           + +++ V+W    +L      +L PP+E + I      RK+   P           GFD 
Sbjct: 362 QALKRDVEWHPLAELKPAGNDTLLPPMETLQIL---GGRKDKIRPGDVLGALTGDAGFDG 418

Query: 409 RK 410
           ++
Sbjct: 419 KQ 420


>gi|323440456|gb|EGA98168.1| ATP-dependent RNA helicase [Staphylococcus aureus O11]
          Length = 448

 Score =  146 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 135/450 (30%), Positives = 219/450 (48%), Gaps = 15/450 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ + IP +L+R ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNKKLER 121
           ++     ++ P+ +++ PTRELA Q+ D      +        + IGG   E   ++   
Sbjct: 66  IDS---EIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRCNA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L ++    LVIDEAD M+D+G I  +  I + +       
Sbjct: 123 QPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNANIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +LQ     +L +P+ + V++     + IE   + T      +  L       
Sbjct: 183 VFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPTKGAAKVEKTLNL---ID 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFCN + N  +L  SL + G  V  IHG +  R R + +   +    Q ++A
Sbjct: 240 ILNPYLCIIFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYVIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  IE
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 362 K--LIEKKVDWLNGDLSSLNPPLEK-----IDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
               +   VD  +G+L  +    ++      D    N  +       K+      KK + 
Sbjct: 360 DRGFVFNTVDIKDGELKEVKAHNQRQARMCKDDHLTNQVKNKVRSKIKNKVKPGYKKKFK 419

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLG 444
            +   +  +E ++ SK QQ+ Q+   +  G
Sbjct: 420 QEVEKMKRQERKQFSK-QQNRQKRKQNKKG 448


>gi|238749573|ref|ZP_04611078.1| ATP-independent RNA helicase dbpA [Yersinia rohdei ATCC 43380]
 gi|238712228|gb|EEQ04441.1| ATP-independent RNA helicase dbpA [Yersinia rohdei ATCC 43380]
          Length = 504

 Score =  146 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 129/374 (34%), Positives = 205/374 (54%), Gaps = 8/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L 
Sbjct: 49  SFSSLTLPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGVLD 108

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            +  G     + + L+L PTRELA QV+    +  +       L + G  P   Q   L 
Sbjct: 109 KIAVGE---FVTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLV 165

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRI +H  +  L++++++ILV+DEADRMLDMGF   I ++ S  P  RQT
Sbjct: 166 HAPHIVVGTPGRIQEHLRKKTLILDDLKILVLDEADRMLDMGFADAIDDVISYTPPQRQT 225

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++         +R  VN      +         +    +K   L   + 
Sbjct: 226 LLFSATYPQGIEQ----ISARVQRQPVNVEVDDGDEAPAIEQVFFETTREKRLPLLISVL 281

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S    ++ ++FCN KK+  N+  +LE +G SV A+HG+++QR R ++L  F   + +++V
Sbjct: 282 SHYQPESCVVFCNTKKDCQNVYEALESRGISVLALHGDLEQRDRDQVLVRFSNRSCRVLV 341

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+  V NF++    E ++HRIGRTGRAG  G A +L   +++    AI
Sbjct: 342 ATDVAARGLDIKDLALVVNFELAFDPEIHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHAI 401

Query: 361 EKLIEKKVDWLNGD 374
           E  ++ K+ W   D
Sbjct: 402 EDYLQMKLKWTPAD 415


>gi|143636073|gb|ABO93350.1| vasa-like protein [Hydractinia echinata]
          Length = 680

 Score =  146 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 130/389 (33%), Positives = 208/389 (53%), Gaps = 15/389 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++ GLS  +   +  A Y+KPTP+Q   IP++L   D+   AQTG+GKTA+F+LP+L 
Sbjct: 224 SFSEAGLSESIQKNIEKAKYLKPTPVQKYAIPIILGDRDLMSCAQTGSGKTAAFLLPVLA 283

Query: 62  ILEKGRAR-------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            + + + +       V+ P  LI+ PTRELA Q+     K+    ++   ++ GG+    
Sbjct: 284 SIMQHKDQLTSQLSEVQAPLGLIIAPTRELANQIYQEARKFSFQTSVRPVVVYGGVSVAY 343

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++++ G  +L+ TPGR+ D   + K+ + N++ LV+DEADRMLDMGF+P ++ I    
Sbjct: 344 QLRQVQSGCHLLVGTPGRLKDFIGKRKISLENLKYLVLDEADRMLDMGFMPDVKEIIHGF 403

Query: 175 PFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  R TL+FSAT  +E+QK++  FL N   + +    ST   IE   +       +
Sbjct: 404 GMPAKEDRHTLMFSATFPEEIQKLAGEFLNNYVFLTIGKVGSTHSDIEQTVIEVDNASKR 463

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
                   +  Q+     ++F   K+    L   L + GF   +IHG+  Q+ R + L  
Sbjct: 464 ---DKLVEMLGQEGGNKNLVFVQTKRQADFLASYLCQNGFPTTSIHGDRFQQQREEALRE 520

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   +++A+ +AARGLDI DV  V N+D+P+  E YIHRIGRTGR G  G+A +  +
Sbjct: 521 FRAGQQTVLIATAVAARGLDIADVKQVINYDLPDEIEEYIHRIGRTGRIGNKGRATSFFS 580

Query: 351 K-EDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           +  D     A+ K +      +   L  +
Sbjct: 581 RGNDEALARALVKTLADSEQVVPDWLEEV 609


>gi|162605920|ref|XP_001713475.1| eukaryotic initiation factor 4a [Guillardia theta]
 gi|6690142|gb|AAF24007.1|AF083031_4 eukaryotic initiation factor 4a [Guillardia theta]
          Length = 385

 Score =  146 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L  +++  +   G+ +P+ IQ + I  ++ + DV   +Q+GTGKTA+FV+  L 
Sbjct: 13  TFEEMELKRELLKGIYGYGFERPSFIQQRGILPIINKEDVVAQSQSGTGKTATFVIGTLQ 72

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +++    L+L PTRELA QV   F+  G    +   LL GG   +  NK+  +
Sbjct: 73  NLSNIENKIKN---LVLVPTRELATQVEQVFKSIGFFMKIKTQLLTGGDRIQITNKEQYK 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPG++LD  ++    + N+E LV+DEAD M   GF   +  I   +P   +  
Sbjct: 130 KPQIVIGTPGKVLDSLSKKTYYIENLEYLVVDEADEMFSRGFKIQVLKIIKYLPLEAKIA 189

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E  ++ E F+ NP +I V     T E I+  ++A   +  K  ++++  + S
Sbjct: 190 LFSATMPIETLEIVELFMTNPVKILVKKDELTLEGIKQFYIAIEKEEWKLDSVIE--IYS 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   II+ N ++    L + ++K GF V  +HG + Q  R  ++ +F+ G  +++++
Sbjct: 248 KIKITQSIIYVNTRRKTEWLANIMKKYGFDVGYLHGEMLQIDRSSVMKDFRSGLFRILIS 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL +RG+DI  V  V N+D+P   E YIHRIGR+GR GR G A   +++ D+  + +IE
Sbjct: 308 TDLVSRGIDIQQVCLVINYDLPKLKEVYIHRIGRSGRFGRKGVAINFLSRSDVSILRSIE 367

Query: 362 KLIEKKVDWLNGDLSSL 378
                 ++ +  D+S  
Sbjct: 368 GYYNTNIEEMPNDISEF 384


>gi|324505559|gb|ADY42388.1| ATP-dependent RNA helicase DDX3X [Ascaris suum]
          Length = 788

 Score =  146 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 139/436 (31%), Positives = 215/436 (49%), Gaps = 29/436 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P +   +  +GY +PTP+Q  +IP ++   D+   AQTG+GKTA+F++P++  
Sbjct: 287 FADLKLHPWIEENIKLSGYGRPTPVQKYSIPTLMNNRDLMSCAQTGSGKTAAFLVPLINN 346

Query: 63  -------------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIG 108
                         ++   R + P  LIL PTREL+ Q+ +   K+     +T A L  G
Sbjct: 347 VLQNGPEALYRSTTQQNGRRKQYPAALILSPTRELSLQIYNESRKFAYRTPITSALLYGG 406

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
              +  Q  KL  G  +LI TPGR++D   +G + ++    LV+DEADRMLDMGF P I+
Sbjct: 407 RENYREQINKLRLGVHILIATPGRLIDVMEQGYIGLDGCRFLVLDEADRMLDMGFEPQIR 466

Query: 169 NIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
            I           R T +FSAT   E+Q ++++FL             +        +  
Sbjct: 467 QIVDLSEMPPKGKRVTAMFSATFPKEIQVLAQDFLMPNYVFLAVGRVGSTSENIMQKIVW 526

Query: 225 YAQYSKKCALLQQLLQSQDTMKN-----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
             ++ KK  L+  L        +      ++F   K+   +L + L+K G++V AIHG++
Sbjct: 527 VEEHEKKSFLMDLLDAGVKVAYSEPTALTLVFVETKRGASDLAYYLQKDGYNVVAIHGDL 586

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q  R K L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P+  + Y+HRIGRTGR 
Sbjct: 587 KQFEREKHLETFRSGVAPILVATAVAARGLDIPNVKHVINYDLPSDIDEYVHRIGRTGRV 646

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           G  G A +    ++      + +LI +    L   L  L+        AQ   +R     
Sbjct: 647 GNVGLATSFFNDKNRNIARDLAELIVEANQELPEWLEKLSSD------AQRYGSRPGRVK 700

Query: 400 PQKSTGFDRRKKNYSS 415
                G    +  Y+S
Sbjct: 701 GGGRFGGRDHRVQYNS 716


>gi|330926789|ref|XP_003301614.1| hypothetical protein PTT_13150 [Pyrenophora teres f. teres 0-1]
 gi|311323488|gb|EFQ90287.1| hypothetical protein PTT_13150 [Pyrenophora teres f. teres 0-1]
          Length = 1053

 Score =  146 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 116/379 (30%), Positives = 194/379 (51%), Gaps = 6/379 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA+L LS +   A+   G+   T IQ K IP +L   DV G A+TG+GKT +F++P + 
Sbjct: 575 EFAELNLSERTRQAIDGMGFKTMTEIQQKAIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 634

Query: 62  ILEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L + R + R    +I+  PTRELA Q+     +  ++++ T  + IGG    A+ +KL 
Sbjct: 635 MLSQLRFKPRNGTGVIVVSPTRELALQIFGVARELMEHHSQTFGICIGGANRSAEAEKLR 694

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G ++LI TPGR +    N    +  N+  LVIDEADR+L++GF   +++I  ++P  RQ
Sbjct: 695 KGVNLLIATPGRLLDHLHNTQGFVFKNLRSLVIDEADRILEVGFEDEMRSIIKILPTERQ 754

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT T +++ ++   L+           +   T++          S     L    
Sbjct: 755 TMLFSATQTTKVEDLARISLKAGPLYINVDHRAEHSTVQGLEQGYVLCDSDTRFRLLFSF 814

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   K  I+F +   +V      L      V  +HG + Q++R      F       +
Sbjct: 815 LKKHQKKKVIVFLSSCASVDFYSELLNYIDLPVLGLHGKLKQQARTNRFFEFVNAQSGTL 874

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKHID 358
           + +D+AARGLDIP+V  V  FD P+   +YIHR+GRT R A   G++   +   ++  + 
Sbjct: 875 ICTDVAARGLDIPEVDWVIQFDPPDDPRDYIHRVGRTARGANGKGRSLMFLLPSEVGFLK 934

Query: 359 AIEKLIEKKVDWLNGDLSS 377
            ++   E +V  +  +L +
Sbjct: 935 LLK---ESRVPLVEFELPA 950


>gi|325963995|ref|YP_004241901.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470082|gb|ADX73767.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 564

 Score =  146 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 133/400 (33%), Positives = 208/400 (52%), Gaps = 7/400 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  +   +V ++ DAG   P PIQ  T+P+ L  HD+ G A+TGTGKT  F +P L 
Sbjct: 38  SFADFNVRADIVESLADAGITHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGIPALQ 97

Query: 62  ILEKGRARVRM-------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L++ PTRELA QVA++ +   +  N  +A + GG  +E 
Sbjct: 98  RVVGRDDAGYEKLAVPGAPQALVIVPTRELAVQVANDLQTASRKRNARIATIYGGRAYEP 157

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L+ G +V++ TPGR++D + +  L + N++++++DEAD MLD+GF+P ++ + +  
Sbjct: 158 QVEALKNGVEVVVGTPGRLIDLYKQKHLSLKNVKVVILDEADEMLDLGFLPDVETLIAAT 217

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQTLLFSATM   +  ++  ++  P  I    P     T        Y  +S     
Sbjct: 218 PAVRQTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDEGLTKRDIRQLIYRAHSMDKIE 277

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +         IIF   K+    +   L  +GF+  AIHG++ Q +R + L  F+  
Sbjct: 278 VVARILQAKGRGRTIIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRNN 337

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+      + Y+HR+GRTGRAG  G A T V  +D+
Sbjct: 338 KVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWDDM 397

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
                I K +   V       SS     E +DI +    R
Sbjct: 398 PRWGLINKALGLSVPEPIETYSSSPHLYEDLDIPEGTKGR 437


>gi|229820496|ref|YP_002882022.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333]
 gi|229566409|gb|ACQ80260.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM
           12333]
          Length = 589

 Score =  146 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 138/368 (37%), Positives = 206/368 (55%), Gaps = 7/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   ++ AV   G+  PTPIQ   IP +L   D+ G+AQTGTGKTA+F LP+L 
Sbjct: 21  SFDDLGLPQALLDAVTGLGFTTPTPIQTAAIPALLSGRDLVGVAQTGTGKTAAFGLPLLA 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++   A V+    L+L PTRELA QV+D    +  +      L I  G  F  Q + LE
Sbjct: 81  AVDPQLAAVQ---ALVLTPTRELAIQVSDAVASFVPSGAGVKVLPIYGGASFVPQLRGLE 137

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR++D   RG L ++ +  LV+DEAD ML MGF   +  I +  P T+Q 
Sbjct: 138 RGAQVVVGTPGRVIDLLERGSLDLDALRYLVLDEADEMLRMGFAEDVDVILAKTPATKQV 197

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   ++KV+E  L+NP+ I V   ++    +   +        +  A     + 
Sbjct: 198 ALFSATMPPPIRKVAETHLRNPEEIAVARQATPIAAVTQTYAIVPY---RNKAEALSRVL 254

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       I+F   ++    +  +L  +G +  +I G++ QR R +I+   + G + ++V
Sbjct: 255 ATSDADAAIVFVRTRETAEEVGTALASRGINAASISGDVAQRERERIVERLRSGALDVLV 314

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +G V NFDVP   E Y+HRIGRTGRAGR G A T +  ++   +  I
Sbjct: 315 ATDVAARGLDVERIGLVVNFDVPREVETYVHRIGRTGRAGRTGNALTFLTPKEKPRLRTI 374

Query: 361 EKLIEKKV 368
           E++   ++
Sbjct: 375 ERVTGSRL 382


>gi|330719991|gb|EGG98438.1| ATP-dependent RNA helicase SrmB [gamma proteobacterium IMCC2047]
          Length = 448

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 129/373 (34%), Positives = 204/373 (54%), Gaps = 7/373 (1%)

Query: 3   FADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           F +L     L+ +++ A+   G+ +PTP+Q ++IP  L   D+   A+TG+GKTA+F+LP
Sbjct: 2   FTELSPANPLNERLIKALEKQGFEQPTPVQEQSIPAALAGKDLLVSAETGSGKTAAFLLP 61

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L  L    A     R L+L PTRELA QV  N E      +L   L+IG   F+ Q   
Sbjct: 62  ILNKLLANDAPNTGTRALVLVPTRELARQVLKNCEALASFSHLKAGLIIGRENFQIQKAL 121

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +  ++LI TPGR+++H ++      ++E+LV+DEADRMLDMGF   +  IT      R
Sbjct: 122 FRKNPEILIATPGRLVEHLDQNTPDFKDLEVLVLDEADRMLDMGFGEDVLKITHACNKER 181

Query: 179 QTLLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTLL+SAT     L+ + E  L +P+++ +N+     ++I    +       K+   L  
Sbjct: 182 QTLLYSATLNQKGLKPMIEKVLTDPQKLLLNSVRDQHQSIRQQIILADDTGHKER--LLL 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L +++  +  +IF N +     L   L K       +HG ++Q  R +++   + G I 
Sbjct: 240 ALLTREKYEKALIFTNTRAKADVLGEMLFKSEVRSGVLHGEMEQEHRNRVVERLRTGHIS 299

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VASD+AARGLDI  +  V NFD+    ++Y+HRIGRTGRAG  G A +L+   +   +
Sbjct: 300 ALVASDVAARGLDIKGIDLVINFDMARSGDDYLHRIGRTGRAGETGLAVSLIIDPEWNLM 359

Query: 358 DAIEKLIEKKVDW 370
             IE+ + +K + 
Sbjct: 360 AGIERYLGQKFER 372


>gi|311694990|gb|ADP97863.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15]
          Length = 427

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 127/396 (32%), Positives = 208/396 (52%), Gaps = 8/396 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L  +++ A+   G+   TPIQ +T+P  L   D+ G AQTGTGKTA+F++  +
Sbjct: 11  LRFSDLNLDKRLLDAITAIGFEYCTPIQAETLPWTLACEDLIGQAQTGTGKTAAFLITAI 70

Query: 61  T-----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  + +       PR L L PTRELA Q+A + E+  ++    V  ++GG+ ++ Q
Sbjct: 71  QSLLETPIPEKERFASEPRVLALAPTRELAMQIAKDAEQLCQHTGHNVVTVVGGMNYDKQ 130

Query: 116 NKK-LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +      D+L+ TPGR++D      + ++ ++IL++DEADRMLDMGFIP ++ I    
Sbjct: 131 RDQLQNEIVDILVATPGRLIDFLGSQDVFLDQLDILILDEADRMLDMGFIPDVKRIIRKC 190

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
               +      + T   Q V           E        +T E      Y     +   
Sbjct: 191 TPKEERQTLLFSAT-FNQDVLNLASMWTSNAEFVEIEPEQKTAERVEQTVYLVGDDEKLP 249

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +      +  ++  ++F N++    +L   L  QG  V  + G I Q  R+K L  FK+G
Sbjct: 250 VLVNFLKRPEVEKALVFANRRDQCRDLEEDLRNQGVKVALMSGEIAQNKRLKTLDQFKKG 309

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           +IQ++VA+D+A RG+ +  V HVFN+++P+ AE+Y+HRIGRTGRAG+HG + +   ++D 
Sbjct: 310 SIQVLVATDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGKHGVSISFAGEDDS 369

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
             + AIE  I +K+     D  +L  P++   I + 
Sbjct: 370 FALPAIETYISQKLKTAVPD-EALMAPMDNPPITRK 404


>gi|325091017|gb|EGC44327.1| ATP-dependent RNA helicase drs1 [Ajellomyces capsulatus H88]
          Length = 828

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 149/449 (33%), Positives = 222/449 (49%), Gaps = 25/449 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L 
Sbjct: 305 SFQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILE 364

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R +IL PTRELA Q  +   K     ++T   L+GG     Q   L++
Sbjct: 365 RLLYRPRKVPTSRVVILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKK 424

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 425 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 484

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+ + K+    L  P R+ V+    T  T+   FV       +K      +L 
Sbjct: 485 MLFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLIQEFVRLRPGREEKRLGYLIVLC 544

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   KK    +       G  V  +HG++ Q  R+K + +F++G +  ++
Sbjct: 545 KNIYKDRVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRIKSVESFRDGKVSFLL 604

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA- 359
           A+D+A+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A TL A+ D K + A 
Sbjct: 605 ATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKAA 664

Query: 360 -----------IEKLIE---------KKVDWLNGDLSSLNPPLEKIDIAQ--HNHARKNN 397
                      + +LIE         K  +        L    E+  +AQ      R +N
Sbjct: 665 VKTGRAQGAKIVSRLIETAEADKWAAKVEEMQEEVQEILREEKEEKQLAQAEMEVTRGSN 724

Query: 398 PIPQKSTGFDRRKKN-YSSQKSHIPLKES 425
            +        R K+  + S+K  +  K+ 
Sbjct: 725 LLNHDKEIMSRPKRTWFESEKEKLQAKQR 753


>gi|68473005|ref|XP_719308.1| hypothetical protein CaO19.7546 [Candida albicans SC5314]
 gi|46441121|gb|EAL00420.1| hypothetical protein CaO19.7546 [Candida albicans SC5314]
 gi|238880344|gb|EEQ43982.1| ATP-dependent rRNA helicase RRP3 [Candida albicans WO-1]
          Length = 399

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 138/378 (36%), Positives = 209/378 (55%), Gaps = 14/378 (3%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
             + KPTPIQ + IP  L+  D+ G+AQTG+GKTA+F +P+L  L   +        L+L
Sbjct: 1   MKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQQPYFA---LVL 57

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA Q+ D F+  G +  L  + ++GG+    Q + L R   V++ TPGRI+DH  
Sbjct: 58  APTRELAFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPGRIMDHLE 117

Query: 139 RGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
             K     N++ LV+DEADR+LDM F P +  I  ++P  R T LFSATMT++++K+   
Sbjct: 118 HTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTYLFSATMTNKIEKLQRA 177

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
            L NP R+ V++   TA+ +    +     Y     +      ++   K+ I+F     +
Sbjct: 178 SLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLL---NEFMGKSIIVFTRTVAH 234

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
                      GF+   +HG + Q  R+  L+ FK     ++VA+D+AARGLDIP V  V
Sbjct: 235 AQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAARGLDIPSVDVV 294

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
            N+D+P  ++ YIHR+GRT RAGR GK+ +L+ + D++    IE ++ KK+   +     
Sbjct: 295 INYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIESVLGKKLPKED----- 349

Query: 378 LNPPLEKIDIAQHNHARK 395
             PP E +D A H H  K
Sbjct: 350 -KPPKEVLD-ALHVHVDK 365


>gi|242012580|ref|XP_002427009.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212511247|gb|EEB14271.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 538

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 114/381 (29%), Positives = 188/381 (49%), Gaps = 7/381 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + GL   ++  +    Y KPTPIQ   IP+++   D+ G AQTG+GKTA+F++P++ 
Sbjct: 132 SFNEAGLCSTLINLINKCQYHKPTPIQKHCIPIIMSGRDLMGCAQTGSGKTAAFLIPIIN 191

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                     ++    P  +I+ PTREL  Q+ +   K+ +   L VAL  GG     Q 
Sbjct: 192 KLLEKNQIMSKSSFCTPEVIIMTPTRELTIQIFEEARKFSRGTFLKVALTYGGTAVFHQV 251

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +K++ G ++L+ TPGR+LD   RG +  +  E L++DEADRMLDMGFI  I+ + +    
Sbjct: 252 EKIKNGCNILVATPGRLLDFVQRGIIDFSMTEFLILDEADRMLDMGFISEIKKMINHPTM 311

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
              +   +   +       ++  +      +              V  +   SK     +
Sbjct: 312 KSSSQRQTLMFSATFPSEVQHLAKTFLNNYLFVVVGIVGGACSDVVQKFFSVSKFQKRNK 371

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +   +    +  +   ++K   +   +   ++ F   +IHG+ DQR R + L +FK G 
Sbjct: 372 LIELLESNGSSKCLVFVEQKRTTDFIATFLCEKNFPATSIHGDRDQREREEALRDFKTGK 431

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DI 354
           + ++VA+ +AARGLDI +V HV NFD+P   + Y+HRIGRTGR G  G A +      D 
Sbjct: 432 MDILVATSVAARGLDIKNVAHVVNFDLPKTIDEYVHRIGRTGRVGNRGLATSFYDPLCDS 491

Query: 355 KHIDAIEKLIEKKVDWLNGDL 375
               A+ K++ +    +   L
Sbjct: 492 HLAPALVKILSQAGQEIPDFL 512


>gi|189193873|ref|XP_001933275.1| ATP-dependent RNA helicase DED1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187978839|gb|EDU45465.1| ATP-dependent RNA helicase DED1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 686

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 133/394 (33%), Positives = 207/394 (52%), Gaps = 21/394 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F +  L   ++  +  +GY  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+   
Sbjct: 197 FTNPPLDDHLLSNIELSGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQ 256

Query: 60  -----------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
                            GR R   P +L+L PTREL +Q+ D   K+     +   ++ G
Sbjct: 257 AFQNGPSPPPQQAQGGYGRQRKAYPTSLVLAPTRELVSQIFDEARKFAYRSWVRPCVVYG 316

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G    +Q +++ERG D+L+ TPGR++D   RG++ + +I+ LV+DEADRMLDMGF P I+
Sbjct: 317 GADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIR 376

Query: 169 NITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
            I            QTL+FSAT   ++Q ++ +FL++   + V    ST+E I       
Sbjct: 377 RIVEGEDMPPTAGRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKIEYV 436

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                +        +         +IF   K+   +L   L  QGF   +IHG+  QR R
Sbjct: 437 EDVDKRSV---LLDILHTHGAGLSLIFVETKRMADSLSDFLINQGFPATSIHGDRTQRER 493

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            K L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G 
Sbjct: 494 EKALEMFRTGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGI 553

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           A     + +   +  + +L+++    + G L S+
Sbjct: 554 ATAFFNRGNRGVVRDLLELLKEANQEVPGFLESI 587


>gi|72044758|ref|XP_779919.1| PREDICTED: similar to nuclear RNA helicase Bat1 isoform 1
           [Strongylocentrotus purpuratus]
 gi|115688648|ref|XP_001178866.1| PREDICTED: similar to nuclear RNA helicase Bat1 [Strongylocentrotus
           purpuratus]
 gi|115946602|ref|XP_001177126.1| PREDICTED: similar to nuclear RNA helicase Bat1 isoform 1
           [Strongylocentrotus purpuratus]
 gi|115946604|ref|XP_001177262.1| PREDICTED: similar to nuclear RNA helicase Bat1 isoform 2
           [Strongylocentrotus purpuratus]
          Length = 429

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 93/375 (24%), Positives = 164/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 49  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 108

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +V +             A+  + F KY     + V      I  + Q  K    
Sbjct: 109 LDPVDGQVSVLVMCHTRELAFQIAKEYERFSKYMPTVKVGVFFGGLSIKKDEQTIKTNCP 168

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +     +   L +    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 169 HIVVGTPGRTLALGRQKILNLKHVKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 228

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  + V+  +         +        K   L        
Sbjct: 229 FSATLSKEVRPVCKKFMQDPMEVYVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL--LDV 286

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + LC  L +Q F    IH  + Q  R+     FK    +++VA+
Sbjct: 287 LEFNQVVIFVKSVQRCIALCQLLVEQNFPAIGIHRAMQQDERLARYQAFKTFQKRILVAT 346

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ +ED K ++ ++
Sbjct: 347 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDEEDAKTLNDVQ 406

Query: 362 KLIEKKVDWLNGDLS 376
              E  +  L  ++ 
Sbjct: 407 DRFEVNIGELPEEID 421


>gi|330926544|ref|XP_003301506.1| hypothetical protein PTT_13026 [Pyrenophora teres f. teres 0-1]
 gi|311323638|gb|EFQ90408.1| hypothetical protein PTT_13026 [Pyrenophora teres f. teres 0-1]
          Length = 514

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 127/432 (29%), Positives = 206/432 (47%), Gaps = 25/432 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++FA L ++P +V ++      +PT IQ   IP +L+  D  G ++TGTGKT +F +P+L
Sbjct: 84  LNFASLNVAPWLVASLASMEIKRPTGIQASCIPEILKGKDCIGGSRTGTGKTVAFSVPIL 143

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               +          +I+ PTRELA Q+ +  +      ++   L+ GG    +Q   L 
Sbjct: 144 QKWSE---DPSGIFAVIVTPTRELAIQIYEQVKAISAPQSMKPILITGGSDQRSQAIALA 200

Query: 121 RGADVLICTPGRILDHFN----RGKLLMNNIEILVIDEADRMLDMG---FIPYIQNITSL 173
               V+I TPGR+ +H           +  ++ +V DEADR+L  G    +P ++   S+
Sbjct: 201 SRPHVVIATPGRLAEHIRTSGEDTICGLRRVKFVVFDEADRLLAPGKGSMLPDLETCLSV 260

Query: 174 VPFTRQTLL--FSATMTDELQKVSENFLQNPKRIEV----NTPSSTAETIEHCFVATYAQ 227
           +P         F+AT+T E+  +        +        +T                  
Sbjct: 261 LPPKESRQTLLFTATVTPEVMALKHQPRAPGRLPIFVSEVDTEDLAIPPRLQQKYLQTPV 320

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             K+C L   L    ++ K+ IIFCN+ K    L + L      V A+H  + Q  R+  
Sbjct: 321 THKECYLHVLLNTPVNSNKSVIIFCNRTKTATLLEYMLRLLDHRVTALHSGLKQTDRVSN 380

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L+ F+    +++VA+D+AARGLDIP+V  V NFDVP   ++YIHR+GRT RAGR G + T
Sbjct: 381 LARFRAQAARILVATDVAARGLDIPEVALVINFDVPRDPDDYIHRVGRTARAGRVGTSIT 440

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDL---------SSLNPPLEKIDIAQHNHARKNNP 398
            + + D+  I AIE  + KK+D    +           +L P  EK   A  +     + 
Sbjct: 441 FIGQRDVDLILAIETRVGKKMDEFEEEAVSVEGRVLRDALKPVTEKKREAMLSIEEGRDV 500

Query: 399 IPQKSTGFDRRK 410
           + ++ TG  +R+
Sbjct: 501 LGKRKTGMQKRR 512


>gi|212540616|ref|XP_002150463.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224]
 gi|210067762|gb|EEA21854.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224]
          Length = 808

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 129/441 (29%), Positives = 207/441 (46%), Gaps = 46/441 (10%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + GL  +++  +   GY  PTPIQ   IP+ LQ  D+ G+A TG+GKTASF+LP+L 
Sbjct: 369 SWEESGLPRRLLDLIKQVGYADPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLV 428

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                    E    +   P  +IL PTRELA Q+    +K+ K  N  V  ++GG   E 
Sbjct: 429 YIAELPRLDEFEWRKNDGPYAIILAPTRELAQQIEIEAKKFSKPLNFNVVSIVGGHSLEE 488

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 489 QAYSLRDGAEIIIATPGRLVDCLERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 548

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY------ 228
           P T +          +             R  +   ++    +E        +       
Sbjct: 549 PVTNEKPDTEEAEDAQAMSQHVGGRDRRYRQTMMYTATMPSAVERIARKYLRRPAIVTIG 608

Query: 229 -------------------SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269
                               K+   L  +L S       I+F N K+N   +   +++ G
Sbjct: 609 NVGQAVDTVEQRVEFVAGEDKRKKRLADILMSGQFQPPIIVFVNIKRNCDAVAKDIKQMG 668

Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329
           FS   +HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++    E+Y
Sbjct: 669 FSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESY 728

Query: 330 IHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
            HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ
Sbjct: 729 THRIGRTGRAGKSGVAITFLGNEDTDVMYDLKQML------MKSSISRVPEELRKHEAAQ 782

Query: 390 HNHARKNNPIPQKSTGFDRRK 410
                     P +  GF ++K
Sbjct: 783 SK--------PTRGGGFSKQK 795


>gi|198476381|ref|XP_001357350.2| GA17489 [Drosophila pseudoobscura pseudoobscura]
 gi|198137669|gb|EAL34419.2| GA17489 [Drosophila pseudoobscura pseudoobscura]
          Length = 578

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 121/383 (31%), Positives = 200/383 (52%), Gaps = 9/383 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L   +   V  +GY   TPIQ   IP++    D+   AQTG+GKTA+F++P+L 
Sbjct: 163 KFEDAKLRDIIAANVTKSGYKLATPIQKVAIPVIAAGRDLMACAQTGSGKTAAFLVPILN 222

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +   +     +  P+ +I+ PTRELA Q+     K+     L +++L GG   + QN+ +
Sbjct: 223 LLLTDAVDLEIGKPQAVIVSPTRELAIQIYHEARKFSHESYLKISILYGGTSVKYQNESI 282

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  +LI TPGR+LD   R  +  ++   LV+DEADRMLDMGF   ++ I +      Q
Sbjct: 283 MMGCHLLIATPGRLLDFVERAFITFDDTRFLVMDEADRMLDMGFSESMRKIVTHCTMRAQ 342

Query: 180 TL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
               +FSAT   E+Q+++  FL N   + +         ++     T  + +K     + 
Sbjct: 343 HQTLMFSATFPQEIQRMAGEFLNNYIFVTIGVVGGACSDVKQ----TIYEVTKYNKRRKL 398

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +   +++    I+F   K+    L   L +      +IHG+  Q  R + L +FK G ++
Sbjct: 399 IDILKESADGTIVFVETKRGADFLASYLSEAEHPTTSIHGDRLQSQREQALRDFKTGKMK 458

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKH 356
           +++A+ +A+RGLDI +V HV N+D+P   ++Y+HRIGRTGR G +G+A +    + D   
Sbjct: 459 VLIATSVASRGLDIKNVKHVVNYDMPKTIDDYVHRIGRTGRVGNNGRATSFFDPDQDSAL 518

Query: 357 IDAIEKLIEKKVDWLNGDLSSLN 379
              + K++E     + G L  L+
Sbjct: 519 ASDLVKILEGSDQVVPGFLRVLS 541


>gi|309361517|emb|CAP29330.2| hypothetical protein CBG_09775 [Caenorhabditis briggsae AF16]
          Length = 820

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 121/380 (31%), Positives = 184/380 (48%), Gaps = 5/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA       ++ A+  + Y +PTPIQ   IP  L   DV GIA+TG+GKTA+++ P + 
Sbjct: 270 SFAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIV 329

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK- 118
                        P  +I+ PTRELA QV    +++ K YN+ V    GG     Q+ + 
Sbjct: 330 HTMDQPDLKEGEGPVAVIVVPTRELAIQVYQEAKRFCKVYNINVICAYGGGSKWEQSNEL 389

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              GA++++CTPGRI+D              LV DEADRM DMGF   +++I+  V   R
Sbjct: 390 QNEGAEMVVCTPGRIIDLVKMEATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPDR 449

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT   ++++++ + L +P RI           IE        Q  K   L++ L
Sbjct: 450 QCLMFSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVYVMQNQDVKFHWLIRNL 509

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++     K  I    +  +         K    V         ++             Q+
Sbjct: 510 VEFASLGKVLIFVTKKLDSEDLAKKLKLKDFDIVLLH--GDMLQAERNENLLKFRKKSQI 567

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI ++  V NFD+    + ++HRIGRTGRAG  G A+TLV ++DI+ + 
Sbjct: 568 LVATDVAARGLDISEIRTVVNFDMARDIDTHVHRIGRTGRAGHRGTAYTLVTEKDIETVG 627

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + K +E     +   L  L
Sbjct: 628 HLVKNLESVSQEVPKPLMDL 647


>gi|282600167|ref|ZP_05973223.2| ATP-independent RNA helicase DbpA [Providencia rustigianii DSM
           4541]
 gi|282566628|gb|EFB72163.1| ATP-independent RNA helicase DbpA [Providencia rustigianii DSM
           4541]
          Length = 476

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 134/373 (35%), Positives = 216/373 (57%), Gaps = 9/373 (2%)

Query: 2   DFADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            FA+L  L  + +  + + G++  TPIQ   +P +L   DV   A+TG+GKTA+F L +L
Sbjct: 22  SFAELNALPSEQLSNLNELGFLTMTPIQEAALPAILAGQDVRAQAKTGSGKTAAFGLGLL 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++    +    ++L+L PTRELA QVA+   +  +       L + G +PF  Q   L
Sbjct: 82  QHIDA---KNFNTQSLVLCPTRELADQVANELRRLARYIPNLKILTLCGGVPFSVQRDSL 138

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              A V++ TPGR+LDH ++  + +++++ LV+DEADRMLDMGF   I  I S  P  RQ
Sbjct: 139 AHAAHVIVATPGRLLDHLHKETVNLDHLQTLVLDEADRMLDMGFSDEIDAIISFAPHQRQ 198

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  + +  +S+    NP+ IE+N+ +   +  +  +             L Q L
Sbjct: 199 TLLFSATWPESIADISQRIQNNPQTIEINSVNELPDVEQQFYEVARHDK----IELLQKL 254

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+D   + +IFCN KK+   +  +L     SV  +HG+++QR R + L  F  G+ +++
Sbjct: 255 LSRDQPASCVIFCNTKKDCQAVFDALNDSKQSVLVLHGDMEQRDRDQTLVRFANGSSRVL 314

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI  +  V NF++    E ++HRIGRT RAG+ G A +L + E+ +  +A
Sbjct: 315 VATDVASRGLDIKALEMVINFELSWDPEVHVHRIGRTARAGQSGLAISLCSPEEAQRANA 374

Query: 360 IEKLIEKKVDWLN 372
           +E+++  K++WL 
Sbjct: 375 LEEMLNMKLNWLP 387


>gi|197119959|ref|YP_002140386.1| ATP-dependent RNA helicase [Geobacter bemidjiensis Bem]
 gi|197089319|gb|ACH40590.1| ATP-dependent RNA helicase [Geobacter bemidjiensis Bem]
          Length = 381

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 134/382 (35%), Positives = 210/382 (54%), Gaps = 6/382 (1%)

Query: 1   MDFADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP- 58
           M FA LGL P+++ A+ +   Y +P PIQ K IP VL+  DV  IA+TG+GKTASF+LP 
Sbjct: 1   MSFASLGLHPELLSAIAEQPEYKRPYPIQSKVIPAVLKGRDVIAIARTGSGKTASFILPL 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF-EAQNK 117
           +  I  +     R    LIL PTRELAAQ+ +  ++ G +    V               
Sbjct: 61  LQLIHCRDAGERRRLSALILVPTRELAAQIEEVAKQLGGHLKPRVKTGAVFGGVAINPQM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +G ++LI TPGR+++   +  + ++++  LV+DEADR+    F   +Q I +L+P  
Sbjct: 121 ILLKGIELLIATPGRLIELVAQNSVQLSSVATLVLDEADRLYAEDFQEELQQILALLPSK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT   E+++++ + L +P RIE+   ++ A+ I       Y   S +   L +
Sbjct: 181 RQNLLFSATFPPEVERLAASLLTDPMRIEIEATATEAQLI---TQQIYLVDSSRKGPLLR 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L      K  ++F + +K   N+   L   G S    H  + Q  R   L+ FK G ++
Sbjct: 238 YLIKSGDWKQVLVFASSQKRADNVTRKLVANGISASTFHSGMSQGGRTSALARFKSGELR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+DLA+RG+D+  + HV N+++P    +Y HRIGRTGRA   G A TL+  ED+ H 
Sbjct: 298 VLVATDLASRGIDVQYLPHVVNYELPRSPIDYQHRIGRTGRAETAGVAVTLLCPEDLAHF 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLN 379
             IEK + +++  ++     L+
Sbjct: 358 KVIEKRLGQRLPRIDTAELDLS 379


>gi|145499813|ref|XP_001435891.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124403027|emb|CAK68494.1| unnamed protein product [Paramecium tetraurelia]
          Length = 402

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 112/377 (29%), Positives = 191/377 (50%), Gaps = 14/377 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +  L  +++  +  A Y KP+PIQ ++IP  L   ++   A+ GTGKT ++++P+L
Sbjct: 37  VEFEEFDLKQELMQGLAAANYEKPSPIQEESIPFALAGSNIIARAKNGTGKTGAYIIPIL 96

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +LE         ++LIL PTRELA QV+   +  GK   +   +  GG  F+    +L+
Sbjct: 97  EMLEME----GQIQSLILVPTRELALQVSSLVKDIGKYMKVECMVSTGGTDFKEDIYRLK 152

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   VL+ TPGRILD   R    ++ ++  V+DEAD++L + F P I  I    P   Q 
Sbjct: 153 QVVHVLVGTPGRILDLAQRKLADLSKLKHFVLDEADKLLSVDFQPLIVKILQFAPPEVQI 212

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT   +++      +   + I +    +     ++                +Q + 
Sbjct: 213 MMFSATFPVDVKGFINEHVPQIQEINLMEELTLKGVTQYYLY----------IDEKQKVN 262

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S   +   IIFCN  + V  L   + + G+S   IH  ++Q+ R K+  +F++   + +V
Sbjct: 263 SNLKLIKAIIFCNSARRVELLTQKITEFGYSCFYIHAKMNQKDRNKVFHSFRKAVGRCLV 322

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A   + + D   +  I
Sbjct: 323 STDLFTRGIDIQSVNVVINFDFPRTAETYLHRIGRSGRFGHLGLAVNFITETDKDTLVQI 382

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ ++  +     ++  
Sbjct: 383 EQELDTDIKPFPKEVDK 399


>gi|116206328|ref|XP_001228973.1| hypothetical protein CHGG_02457 [Chaetomium globosum CBS 148.51]
 gi|121789113|sp|Q2HBE7|DED1_CHAGB RecName: Full=ATP-dependent RNA helicase DED1
 gi|88183054|gb|EAQ90522.1| hypothetical protein CHGG_02457 [Chaetomium globosum CBS 148.51]
          Length = 688

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 130/395 (32%), Positives = 205/395 (51%), Gaps = 20/395 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P++
Sbjct: 198 LTFSNPPLDAHLLSNIELARYQIPTPVQKYSIPIVINGRDLMACAQTGSGKTGGFLFPIM 257

Query: 61  TILEKG-------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                              R R   P  LIL PTREL +Q+ +   K+     +   ++ 
Sbjct: 258 HQSFTQGPSPIPAQSGGGYRQRKAYPTALILAPTRELVSQIYEEARKFAYRSWVRPCVVY 317

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P I
Sbjct: 318 GGADIGSQLRQMERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQI 377

Query: 168 QNITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I           RQTL+FSAT   ++Q ++++FL +   + V    ST+E I      
Sbjct: 378 RRIVQGEDMPTTGQRQTLMFSATFPRDIQMLAQDFLNDYVFLSVGRVGSTSENITQKVEY 437

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
                 +        +         +IF   K+   +L   L  Q F   +IHG+  QR 
Sbjct: 438 VEDVDKRSV---LLDILHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRE 494

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G
Sbjct: 495 RERALELFRNGKCPILVATAVAARGLDIPNVTHVINYDLPTDVDDYVHRIGRTGRAGNTG 554

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            A     + +   +  +  L+++    +   L ++
Sbjct: 555 IATAFFNRGNRGIVRELLDLLKEANQEVPAFLETI 589


>gi|297830946|ref|XP_002883355.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329195|gb|EFH59614.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 612

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 119/373 (31%), Positives = 207/373 (55%), Gaps = 6/373 (1%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-- 61
           ++LG+SP++V A+   G  K  PIQ   +   ++  D+ G A+TGTGKT +F +P++   
Sbjct: 104 SELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKI 163

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                   R R P  L+L PTRELA QV   F +   + +       GG P   Q ++L+
Sbjct: 164 IKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTICL--YGGTPIGQQMRQLD 221

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV + TPGR++D   RG L ++ ++ +V+DEAD+ML +GF   ++ I   +P  RQ+
Sbjct: 222 YGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQS 281

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSATM   ++ +++ +L NP  I++   S           +  A    + +++  L+ 
Sbjct: 282 MMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITTYSILADSYGRASIIGPLVT 341

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K++   L ++   + F   A+HG+I Q  R + L+ F++G   ++V
Sbjct: 342 EHAKGGKCIVFTQTKRDADRLSYA-LARSFKCEALHGDISQSQRERTLAGFRDGHFNILV 400

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+P+V  + ++++PN  E ++HR GRTGRAG+ G A  + +++  + +  I
Sbjct: 401 ATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKII 460

Query: 361 EKLIEKKVDWLNG 373
           E+ +  +   L  
Sbjct: 461 EREVGSRFTELPS 473


>gi|296273792|ref|YP_003656423.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296097966|gb|ADG93916.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 434

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 139/413 (33%), Positives = 221/413 (53%), Gaps = 13/413 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F ++ L  +++ A+ + GY KPT +Q K IP++L+  DV   AQ+GTGKTA+FVLP+  
Sbjct: 3   TFNNIKLCSEILKALEEEGYEKPTEVQEKVIPVLLKNSDVIATAQSGTGKTAAFVLPILQ 62

Query: 60  --LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R+ R+LIL PTRELA Q+  +   YG+  ++   +++GG+  + Q +
Sbjct: 63  KLFETQDNDSTNKRVLRSLILVPTRELAKQIEKSISHYGRYLDIKQTIVVGGLSHKEQIR 122

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           K+  G DVL+ TPGR++DH     + +++I  +V+DEAD ML+MGF+  I+ I S    T
Sbjct: 123 KINAGIDVLVATPGRLIDHIKTKSVNLSSINNIVLDEADTMLEMGFLKDIELIFSQCAKT 182

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R   +FSAT+   ++K+++ FL  P  IEV++  S  + I       Y     K      
Sbjct: 183 RHIGMFSATINQNIKKLAKEFLHKPVVIEVSSQRSAVDII---EQQIYLMDEDKKIEFLS 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   +  +  ++F N K     +       G     IHG+I Q  R + L  FK  +++
Sbjct: 240 YLIGSENWEQVLVFVNTKAKADEITEQFNLDGLKTACIHGDIKQPVRARALEGFKSKSLR 299

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  + +V NF++P    +Y HRIGRTGRAG  G A TL+  ++   +
Sbjct: 300 VLVATDIAARGIDIELLPNVVNFELPETTVDYTHRIGRTGRAGNPGVATTLLCVKEYVQM 359

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKI------DIAQHNHARKNNPIPQKST 404
             IEK +   +  L  D   LN    ++       ++Q    R  N  P+   
Sbjct: 360 AEIEKELIINIPRLTHDEYELNEKQPRVARFKTQSLSQKKGLRDKNKKPKDKA 412


>gi|255325662|ref|ZP_05366759.1| ATP-dependent RNA helicase [Corynebacterium tuberculostearicum
           SK141]
 gi|255297272|gb|EET76592.1| ATP-dependent RNA helicase [Corynebacterium tuberculostearicum
           SK141]
          Length = 432

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 139/433 (32%), Positives = 218/433 (50%), Gaps = 11/433 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-L 60
            FADLGL  ++V  + + G  +P PIQ   IP  L   DV G   TG+GKT +F LPM  
Sbjct: 3   TFADLGLPQRLVHVLHNEGITEPFPIQKAAIPDALAGKDVLGRGPTGSGKTYTFGLPMLA 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +   G ++   PR LIL PTRELA Q+    ++      L V  ++GG+      + L 
Sbjct: 63  RLAGTGASKPAHPRALILAPTRELATQIHQRLDEPAATLGLRVLAVVGGVNINHHIRSLA 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R  DVL+ TPGR  D  ++GKL ++ ++I  +DEAD+M DMGF+P ++ +  L P   Q 
Sbjct: 123 RPVDVLVATPGRAQDLIDQGKLHLDAVQITALDEADQMADMGFLPQVRKLLRLTPVQGQR 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++ K+ E FL +P         +  +++ H       + ++   +L+    
Sbjct: 183 LLFSATLDGDVNKLVEQFLHDPVVHSTAPVQAAVDSMSHHLFFVGERTARNEVVLR---- 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K  V      L + G +   +HG+  Q +R + +  F +G+I ++V
Sbjct: 239 IAARQGKTIMFMRTKHGVDRQVKKLRRSGINAYPLHGDKGQGARTRAIEGFADGSIPVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV  V + D P   + Y+HR GRT R G  G   TLV  E  K +DA+
Sbjct: 299 ATDIAARGIDIADVSLVVHADPPAEHKAYLHRAGRTARGGAAGTVITLVMDEQRKEVDAL 358

Query: 361 EK---LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ---KSTGFDRRKKNYS 414
            K   +   + D  + D  +  P L++I  A+  +     P  Q   +      +K N+ 
Sbjct: 359 IKKAGVTATEHDISHRDNPAGAPVLKEITGARKPNGPALPPPGQAVPQKPAKSVKKSNFQ 418

Query: 415 SQKSHIPLKESEK 427
            ++S   +    +
Sbjct: 419 RRRSGGKVARRRR 431


>gi|256070762|ref|XP_002571711.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238656858|emb|CAZ27941.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 453

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 107/453 (23%), Positives = 193/453 (42%), Gaps = 28/453 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LG+ P++V  + D G  KPT +Q   IP++L+ +DV   A+TG+GKTA+F++P+L
Sbjct: 1   MTFEELGVCPEIVELLRDKGINKPTEVQEGCIPVILEGNDVVACAKTGSGKTAAFLIPIL 60

Query: 61  TILEKGRAR------------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
             L                                    + +     G    +  ++ + 
Sbjct: 61  QSLMTELKPLYALIITPTRELAHQIGEQAAGLNLIQGEPLCNVLVITGGRSIVHQSIDLA 120

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
             P    +        +   T  +  D  N+ +  ++  +++V+DEADR+L+  F   + 
Sbjct: 121 RSPHIVVSTPGRLADLLRTQTAAQEADTENKPEWTLSRTKVVVLDEADRLLEDNFGEDLN 180

Query: 169 NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV------ 222
            I   +P  RQTLLFSAT +  ++   E             P                  
Sbjct: 181 TILKALPKRRQTLLFSATFSGAVKSSLEAAKSVAYAENRRPPILWQPECMTTCSSAGAVT 240

Query: 223 ----------ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
                                       +++     +IF N+ K    +   +   G   
Sbjct: 241 VETLSQYYILMRPEHKEAFLVHTVDQFLTENPHSLIMIFTNKCKWCHLIGLMMTSLGIKT 300

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
             +H ++ Q++R+  L+ F+   I++++A+DLA+RGLD P V  V N +VP R ++Y+HR
Sbjct: 301 TLLHSSMTQKNRISSLTLFRSSQIRVLIATDLASRGLDFPTVDIVINHNVPIRPKDYVHR 360

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           +GRT RAG+ G A TL    ++K + AI+  I K++   + +   +   + ++ IA+ + 
Sbjct: 361 VGRTARAGKAGLALTLCDLFEVKRLKAIQTFINKELKTFDVNEKKVAQIIAEVSIARRDA 420

Query: 393 ARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKES 425
            RK + I         + KN    +S   L ++
Sbjct: 421 ERKLDEIRFDEKREINKAKNLMKARSSKTLNKT 453


>gi|254568340|ref|XP_002491280.1| Putative ATP-dependent RNA helicase of the DEAD-box family [Pichia
           pastoris GS115]
 gi|238031077|emb|CAY69000.1| Putative ATP-dependent RNA helicase of the DEAD-box family [Pichia
           pastoris GS115]
 gi|328352202|emb|CCA38601.1| ATP-dependent RNA helicase [Pichia pastoris CBS 7435]
          Length = 434

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 131/432 (30%), Positives = 210/432 (48%), Gaps = 17/432 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LG+S  +  ++       P+ IQ  TIP +L  +D  G A+TG+GKT +F  PML
Sbjct: 2   VKFEELGVSKWLCESLDAMKIYTPSKIQEATIPKILAGYDCIGGAKTGSGKTIAFAAPML 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T   +    V     LIL PTRELA Q+A+ +   G + N+ V++++GG     Q  +L+
Sbjct: 62  TKWSEDPYGVFG---LILTPTRELALQIAEQYAALGASMNIKVSVILGGGDIVQQALELQ 118

Query: 121 RGADVLICTPGRILDHF------NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           R    ++ TPGR+ DH         G L      +L   +       G            
Sbjct: 119 RRPHFVVATPGRLADHILSSGEETIGGLRKIKFLVLDEADRLLSNSFGSDLERCFKVLPP 178

Query: 175 PFTRQTLLFSATMTDELQ-----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           P  RQTLLF+AT+TDE++      V E  L        +                   Y 
Sbjct: 179 PEKRQTLLFTATVTDEVRALKEKPVPEGKLPVFVHEVESVDKVAIPATLTTNYLFIPSYV 238

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  L   L   ++     I+F N+ +    L  +L    F V ++H  + Q  R+  L 
Sbjct: 239 KEAYLNAVLALEENADSTVIVFVNRTQTAELLRRTLRNLEFRVASLHSEMPQIERINSLH 298

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G  ++++A+D+A+RGLDIP V  V N+D+P   ++YIHR+GRT RAGR G++ + V
Sbjct: 299 RFKAGAARILIATDVASRGLDIPSVELVVNYDMPADPDDYIHRVGRTARAGRKGESLSFV 358

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            ++D+K + AIE+ I KK+D    +L + N  +E   + +   A++   +  +  GF  +
Sbjct: 359 TEQDVKRVLAIEERINKKMD--KYELVTDNKVIET-SLHKTGAAKREALMAMEREGFGEK 415

Query: 410 KKNYSSQKSHIP 421
           +KN   + +   
Sbjct: 416 RKNNKIKNAKRK 427


>gi|123474251|ref|XP_001320309.1| eukaryotic translation initiation factor [Trichomonas vaginalis G3]
 gi|121903112|gb|EAY08086.1| eukaryotic translation initiation factor, putative [Trichomonas
           vaginalis G3]
          Length = 424

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 129/378 (34%), Positives = 198/378 (52%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  + L P ++  + + G+  P+ IQ  +I  +L    V   AQ+GTGKT +F + +L 
Sbjct: 41  DFDQMELKPLLLRGIYNYGFRGPSDIQSLSIKPILMNRCVIAQAQSGTGKTGAFAIGILN 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            ++  +      + L+L PTRELA Q+   F + G       V L  GG        K +
Sbjct: 101 RIDTTQ---PTTQALVLAPTRELATQIYYFFVEIGSKMADLKVELFKGGNSVADDQAKAQ 157

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               + + TPGR LD  ++G L   NI+I  IDEAD ML  GFI  I+ I   +    Q 
Sbjct: 158 ECPHIAVSTPGRALDLISKGYLRCENIQIACIDEADEMLGEGFISQIKEIFEYLNKDIQF 217

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT   E+  + + F+ +P +I V     T E I+  +V      +K        + 
Sbjct: 218 LLFSATFPKEILSIIDQFMNDPVKILVKAEMLTLEGIKQFYVNVETSVNKF--PTLLDIY 275

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              +++  +IF N K+ V  L  S E   F++ AIHG ++Q  R +I+  F+ G  + +V
Sbjct: 276 GSLSIQKAVIFANSKETVEYLQKSFEANEFNISAIHGGMEQAERDRIMHQFRTGNTRALV 335

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++DL ARG+D+  +  V NF++PN AENY+HRIGR+GR GR G A  +    D+  I  I
Sbjct: 336 STDLLARGIDVQQITLVINFELPNTAENYLHRIGRSGRYGRKGIAINICDASDMIRIKEI 395

Query: 361 EKLIEKKVDWLNGDLSSL 378
           EK+ + ++  L  D++ L
Sbjct: 396 EKIYQTQIAELPADIADL 413


>gi|149910882|ref|ZP_01899514.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
 gi|149806036|gb|EDM66019.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
          Length = 397

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 131/370 (35%), Positives = 204/370 (55%), Gaps = 5/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L   ++  V   GY +PTPIQ + IP ++  +D+ GIAQTGTGKTA+F LP++ 
Sbjct: 3   EFKEFSLLESIIDRVSLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIIN 62

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              + +  +    T   IL PTRELA+Q+  N + Y     L   ++ GG+  + Q   +
Sbjct: 63  NFGRNKIDINAKSTRSLILTPTRELASQIMQNIDDYADGLGLKTKVVYGGVGRQNQVDSI 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L+ TPGR+LD      +    +E+ V+DEAD MLDMGF   +Q I S +P  RQ
Sbjct: 123 ALGLDILVATPGRLLDLIKTDDINFKALEVFVLDEADTMLDMGFFKDVQRIISKLPKNRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E++ +++  L +P +I++   + T E I                     +
Sbjct: 183 TLLFSATMPAEIEILADAILTDPTKIQITAETVTIERINQSVYHLEKSNKVPL---LLNI 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   K  +IFC  K     +  +LE+   +  ++H    Q  R + L NFK+  + ++
Sbjct: 240 LEKSHYKKVLIFCKTKPGADIIVEALEEASITAASLHSGKTQAVREEALQNFKDSNLSVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ ++  V N+++P    NYIHRIGRT RAG+ G A +   + DI  +++
Sbjct: 300 VATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGIAISFAVENDITLLNS 359

Query: 360 IEKLIEKKVD 369
           IEK I K + 
Sbjct: 360 IEKSIGKAIP 369


>gi|223056226|gb|ACM80365.1| vasa [Asterias forbesi]
          Length = 715

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 135/387 (34%), Positives = 212/387 (54%), Gaps = 13/387 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  LSP+V   V  A Y +PTP+Q   IP++    D+   AQTG+GKTA+F+LP+ T
Sbjct: 262 SFDEAQLSPEVRRNVTKAKYDRPTPVQKYGIPIINSGRDLMACAQTGSGKTAAFLLPIXT 321

Query: 62  ILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +          +  + P+ +I+ PTREL +Q+     K+ ++  L   ++ GG     Q
Sbjct: 322 GMLNNGITGSSFSDXQEPQCIIVSPTRELTSQIYKXAYKFARDTILRPVVIYGGTSVXHQ 381

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K++ERG  + + TPGR++D  NRGK+ +NN + LV+DEADRMLDMGF P ++ +     
Sbjct: 382 LKEVERGCHLXVATPGRLMDFINRGKVKVNNCKFLVLDEADRMLDMGFGPEMERLIYXPD 441

Query: 176 FT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQ L+FSAT  +E+ + +  +LQ+   + V      A  I    +       K 
Sbjct: 442 MPXKGERQCLMFSATFPNEVXEKAAEYLQDYLFLTVGRVGGAASDITQSVLEVGQYGKK- 500

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L  LLQ+QD     ++F   K++       L +  F   +IHG+ +QR R + L++F
Sbjct: 501 -DQLLALLQAQDATDRTLVFVETKRSADFXASVLSQSEFPTTSIHGDREQREREEALADF 559

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G   ++VA+ +AARGLDIP+V HV N+D+P+  + Y+HRIGRTGR G  GKA +    
Sbjct: 560 RSGRAPVLVATSVAARGLDIPNVKHVVNYDLPSGIDEYVHRIGRTGRVGNLGKATSFYDP 619

Query: 352 -EDIKHIDAIEKLIEKKVDWLNGDLSS 377
            +D +   A+ K++      +   L +
Sbjct: 620 SKDSQSARALIKVLADAQQEVPEFLEN 646


>gi|170782265|ref|YP_001710598.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169156834|emb|CAQ02001.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 520

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 129/394 (32%), Positives = 205/394 (52%), Gaps = 3/394 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   +V A+ D G ++P PIQ +TIPL L   D+ G A+TGTGKT  F LP+ 
Sbjct: 1   MTFTELNIDEDMVQALADHGILEPFPIQEQTIPLALSGQDIIGQAKTGTGKTFGFGLPL- 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I   G       + L++ PTRELA QV ++ +   K+   TV  + GG  +E Q ++L+
Sbjct: 60  -IQRLGLTPEPGVQALVVVPTRELAVQVTEDLQIATKHRATTVVSIYGGKAYEGQIEQLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   +  L +  +  +V+DEAD+MLD+GF+  I+ + +  P  R T
Sbjct: 119 AGAQIVVGTPGRLLDLVGQRLLSLKYVREMVLDEADKMLDLGFLSDIEKLFAQTPAVRHT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +  ++  F          T         +     Y  ++     +   + 
Sbjct: 179 MLFSATMPGPIVALARRF-MTKPIHIRATDPDEGLMQANIRHLVYRAHNMDKDEVIGRIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     +IF   K+    L   L  +GF+  A+HG+++Q  R + ++ FK G   +++
Sbjct: 238 QAEGRGKTVIFTRTKRAAARLVEELNDRGFNAAAVHGDLNQEQRERAMAAFKAGKKDILI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV HV N  +P   + Y+HR+GRTGRAG+ G A T V  +D+     I
Sbjct: 298 ATDVAARGIDVLDVTHVINHTIPEDDKAYLHRVGRTGRAGKTGIAVTFVDWDDLHKWALI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
            + +E          SS       +DI   +  R
Sbjct: 358 NRALEFGQPEPTETYSSSPHLFTDLDIPAGSKGR 391


>gi|15613948|ref|NP_242251.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
 gi|10174001|dbj|BAB05104.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
          Length = 438

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 119/405 (29%), Positives = 200/405 (49%), Gaps = 12/405 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA   +   ++ A+ D G   PT IQ + IP +    DV G +QTGTGKT +F+LP++ 
Sbjct: 5   NFARFQIKKFLLEALSDKGITHPTEIQERLIPAIRNGKDVIGQSQTGTGKTLAFLLPIVD 64

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +E  R  V+ +      E   ++  ++         +  +   L++GG       +KL 
Sbjct: 65  RIEGEREEVQAVITAPTRELAGQIFEELQALLRHVPHDEEIRAKLIVGGTDRSRTLEKLR 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRI D  +   L +    +LV+DEAD+MLDMGFI  +  + + +    Q 
Sbjct: 125 VQPQIVVGTPGRISDLVHEQALNVYTATMLVVDEADQMLDMGFIEDVDKVAARMAENLQM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT+ ++L+   + ++  P+ + V    +TA  IEH  V       +    +   + 
Sbjct: 185 MVFSATIPEKLKPFLKKYMNEPRHVHVQPKQATANLIEHRIVPLRH---RDKLEITTEVA 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S       I+F N K+    L  ++   G +V  +HG +  R R +++   K   +Q +V
Sbjct: 242 SVLNPFLAIVFTNTKEQADELADAMLAAGLNVERLHGGLQPRQRKQVMKRVKNYEVQYLV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI  V H+ N+ +P   + Y+HR+GRT RAG  G A T+ A ED     A+
Sbjct: 302 ATDLAARGIDIKGVSHIINYSLPKDLDFYVHRVGRTARAGADGIALTIFAPEDE---QAV 358

Query: 361 EKLIEKKV-----DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
            KL+++ +     D   G+   L+ P   +   +     K    P
Sbjct: 359 HKLMKRGIQFTYYDLKKGEWQKLDKPPLGVPGEKRRKEDKGLEAP 403


>gi|323455700|gb|EGB11568.1| hypothetical protein AURANDRAFT_2416 [Aureococcus anophagefferens]
          Length = 435

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 110/388 (28%), Positives = 170/388 (43%), Gaps = 4/388 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LGL   +V AV + G+ KPT IQ   IP+ L   DV G+A+TG+GKT +F LP+L  L +
Sbjct: 1   LGLHAALVDAVGELGWAKPTRIQKAAIPVALSGRDVIGLAETGSGKTGAFGLPILHKLLE 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
             +R+       L PTRELA Q+ + F+  G    L    ++GG+   AQ   L +   V
Sbjct: 61  KPSRLFGVA---LAPTRELAVQIHEVFDALGAAIGLRCVCVVGGVEIAAQALALAKLPHV 117

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           ++ TPGR++DH    K         ++ +    +        +    +    R+      
Sbjct: 118 VVATPGRLVDHLENTKGFSLRTCKCLVMDEADRMLSMDFE-KELDAIVGAIPREGRCSML 176

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
                  KV++    +  +      +                 +K        +      
Sbjct: 177 FSATMTSKVAKLQRASLYKPVKVAVNDKFAMPRQLDQRYLFVPAKHKECYLAAVLDARRG 236

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              ++FC            L   GF    +HG + Q  R+  L  FK G   ++VA+D+A
Sbjct: 237 ATALVFCATCAGATRATLLLRNLGFDAACLHGQMAQPKRLGALHKFKAGAATILVATDVA 296

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARGLDIP V  V N+DVP   + Y+HR+GRT RAGR G A   V + D++    +E LI 
Sbjct: 297 ARGLDIPAVDLVLNYDVPTHGKEYVHRVGRTARAGRKGSAIAFVTQYDVELYQRLEHLIG 356

Query: 366 KKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
            K+   + D       L++++ A    A
Sbjct: 357 VKLPKADVDEDMALAFLDRVNDAARLAA 384


>gi|300741894|ref|ZP_07071915.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
 gi|300381079|gb|EFJ77641.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
          Length = 582

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 133/371 (35%), Positives = 200/371 (53%), Gaps = 7/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD G+   +  A+   G V P PIQ  T+P+ L  HD+ G A+TGTGKT  F LP + 
Sbjct: 24  SFADFGVRQDISDALAAVGIVSPFPIQEMTLPVALAGHDIIGQAKTGTGKTLGFGLPTIQ 83

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                         +   P+ LIL PTRELA QV ++     K  N  VA L GG+P+E 
Sbjct: 84  RVVGRDDDQWGSLQKPGAPQALILVPTRELAIQVGNDLAVASKLRNARVATLYGGVPYEP 143

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++L +G +V++ TPGR++D +  G L +  ++ +V+DEAD MLD+GF+P ++ I   +
Sbjct: 144 QVEQLTKGLEVVVGTPGRLIDLYQHGALTLTQVKTVVLDEADEMLDLGFLPSVEKIMGYL 203

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQT+LFSATM   +  ++  ++  P  I    P   A+T        Y  +      
Sbjct: 204 PTDRQTMLFSATMPGPVITMARKYMTKPMHISAADPEDHAKTKASIRQVVYRVHHMDKDE 263

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +         +IF   K++   +   L  +GF+   +HG+++Q +R + L  F+ G
Sbjct: 264 MLGRILRAHGRGRTVIFTKTKRDAARVADELIARGFAAAPLHGDLNQGAREQALRAFRNG 323

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N  VP   + Y+HR GRTGRAG  G A T V  EDI
Sbjct: 324 KVDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGHEGTAVTFVDWEDI 383

Query: 355 KHIDAIEKLIE 365
                I   ++
Sbjct: 384 ARWRLINDALD 394


>gi|311111789|ref|YP_003983011.1| DEAD-box RNA helicase [Rothia dentocariosa ATCC 17931]
 gi|310943283|gb|ADP39577.1| DEAD-box RNA helicase [Rothia dentocariosa ATCC 17931]
          Length = 580

 Score =  146 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 133/371 (35%), Positives = 200/371 (53%), Gaps = 7/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD G+   +  A+   G V P PIQ  T+P+ L  HD+ G A+TGTGKT  F LP + 
Sbjct: 24  SFADFGVRQDISDALAAVGIVSPFPIQEMTLPVALAGHDIIGQAKTGTGKTLGFGLPTIQ 83

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                         +   P+ LIL PTRELA QV ++     K  N  VA L GG+P+E 
Sbjct: 84  RVVGRDDDQWGSLQKPGAPQALILVPTRELAIQVGNDLAVASKLRNARVATLYGGVPYEP 143

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++L +G +V++ TPGR++D +  G L +  ++ +V+DEAD MLD+GF+P ++ I   +
Sbjct: 144 QVEQLTKGLEVVVGTPGRLIDLYQHGALTLTQVKTVVLDEADEMLDLGFLPSVEKIMGYL 203

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQT+LFSATM   +  ++  ++  P  I    P   A+T        Y  +      
Sbjct: 204 PTDRQTMLFSATMPGPVITMARKYMTKPMHISAADPEDHAKTKASIRQVVYRVHHMDKDE 263

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +         +IF   K++   +   L  +GF+   +HG+++Q +R + L  F+ G
Sbjct: 264 MLGRILRAHGRGRTVIFTKTKRDAARVADELIARGFAAAPLHGDLNQGAREQALRAFRNG 323

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N  VP   + Y+HR GRTGRAG  G A T V  EDI
Sbjct: 324 KVDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGHEGTAVTFVDWEDI 383

Query: 355 KHIDAIEKLIE 365
                I   ++
Sbjct: 384 ARWRLINDALD 394


>gi|258570243|ref|XP_002543925.1| hypothetical protein UREG_03442 [Uncinocarpus reesii 1704]
 gi|237904195|gb|EEP78596.1| hypothetical protein UREG_03442 [Uncinocarpus reesii 1704]
          Length = 1206

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 130/438 (29%), Positives = 213/438 (48%), Gaps = 18/438 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL    +  +   GY +PT IQ + IP ++   DV G+A+TG+GKT +F+LPM  
Sbjct: 571 KWSQCGLGVLTLDVIHKLGYDQPTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFR 630

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++  R    +  P  L++ PTRELA Q+    + + K  NL      GG P + Q  +L
Sbjct: 631 HIKDQRPLENMEGPVGLVMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAEL 690

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   +  
Sbjct: 691 KRGAEIIVCTPGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIIGNIRP 750

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           +RQ++LFSAT    ++ ++   L  P  I V   S  A  I                L  
Sbjct: 751 SRQSVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAPEITQIVEVRPENTKFVRLLEL 810

Query: 237 ---QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                    +     +IF ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 811 LGNLYSDDANEDARALIFVDRQEAADGLLRDLMRKGYPCMSIHGGKDQVDRDSTIDDFKA 870

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + +E 
Sbjct: 871 GIFPVLIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQ 930

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            ++   I K +++    +   +  + +  LEK+         K+      ++GF  +   
Sbjct: 931 ERYSVDIAKALKQSGQPVPDAVQKMVDAFLEKV---------KSGKEKASASGFGGKGLE 981

Query: 413 YSSQKSHIPLKESEKISK 430
              Q+         K  K
Sbjct: 982 RLDQERDAARNRERKTYK 999


>gi|240994916|ref|XP_002404560.1| DEAD box protein abstrakt, putative [Ixodes scapularis]
 gi|215491582|gb|EEC01223.1| DEAD box protein abstrakt, putative [Ixodes scapularis]
          Length = 568

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 126/395 (31%), Positives = 200/395 (50%), Gaps = 16/395 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++ ++   G  +PTPIQ++ +P VL   D+ GIA TG+GKT  FVLP+L 
Sbjct: 128 TFKEMKFPRTILASLRRKGITQPTPIQMQGLPAVLSGRDMIGIAFTGSGKTLVFVLPLLM 187

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
              +   R+       P  L++ P+RELA Q  +    +          +L   L IGG 
Sbjct: 188 FCLEQEKRLPFVQNEGPYGLVVCPSRELAKQTFEIVSFFVRALEEAGYPSLRGCLCIGGT 247

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q + + RG  V++ TPGR++D  ++  + ++    L +DEADRM+DMGF   ++ I
Sbjct: 248 SVREQLEIVRRGVHVMVATPGRLMDMLDKKMVNLDMCRYLCLDEADRMIDMGFEEDVRTI 307

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     +      A       V       +
Sbjct: 308 FSFFKGQRQTLLFSATMPKKIQN----FARSALVKPITVNVGRAGAASLDVVQEVEYVKQ 363

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K++V  +   L  +G    AIHG  DQ  R + +  
Sbjct: 364 EAKIVHLLETLQKTAPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERSRAVDA 423

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+     ++VA+D+A++GLD  ++ HV N+D+P   ENY+HRIGRTGR+GR G A T + 
Sbjct: 424 FRRAEKDVLVATDVASKGLDFENIQHVINYDMPEDIENYVHRIGRTGRSGRMGIATTFIN 483

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
           K  D   +  ++ L+ +    +   L +L    EK
Sbjct: 484 KACDESVLLDMKHLLLEAKQKVPPFLLALQSENEK 518


>gi|260904108|ref|ZP_05912430.1| DNA/RNA helicase, superfamily II [Brevibacterium linens BL2]
          Length = 489

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 150/444 (33%), Positives = 229/444 (51%), Gaps = 31/444 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           DFA+LG++  +V A+   G   P PIQ  T+P+ L   D+ G A+TGTGKT  F +P+  
Sbjct: 7   DFAELGVAGPIVAALAAKGITHPFPIQAMTLPVALSGADIIGQAKTGTGKTLGFGIPLLQ 66

Query: 60  -----------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT 102
                                       R+P+ L++ PTRELA QVA +        ++ 
Sbjct: 67  RVVGKNEDGAAPADPENTPEFVSDSTETRLPQALVVVPTRELAKQVAADLVTASTQRDID 126

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
           +  + GG+ F+ Q KKL+ G DV++ TPGR+LD + R  L ++ +  +V+DEAD MLD+G
Sbjct: 127 IMTIYGGMDFDPQIKKLKSGVDVVVGTPGRLLDLYGRKVLRLHKVRTVVLDEADEMLDLG 186

Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           F+P ++ I + VP  RQT+LFSATM   +  ++  ++  P  I  +     +   ++   
Sbjct: 187 FLPDVEKIINAVPAHRQTMLFSATMPGAVITLARRYMSRPTHIRAHDNEDLSLLGKNTEQ 246

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             Y  +S   + L   +   +     IIF   K+    L   L  +GF V  +HG++ Q 
Sbjct: 247 LVYRAHSMDKSELVARMLQAEGRGRTIIFTRTKRTADKLAAELGDRGFQVKPLHGDLGQA 306

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R K L +F+EG + ++VA+D+AARG+DI DV HV N+  P+  + Y+HRIGRTGRAG  
Sbjct: 307 QREKALKSFREGQVDVLVATDVAARGIDIDDVTHVVNYQCPDDEKTYVHRIGRTGRAGNT 366

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           G A TLV  +D+     I K +      L+ D      P E    + H  A  +  IP+ 
Sbjct: 367 GIAVTLVDWDDMPRWRLINKALG-----LDHD-----EPAETYSTSPHFFA--DLSIPKG 414

Query: 403 STGFDRRKKNYSSQKSHIPLKESE 426
           + G  RR++   S     P K  +
Sbjct: 415 TKGRLRRQQTEESDDHAGPKKSEQ 438


>gi|326505994|dbj|BAJ91236.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 685

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 143/432 (33%), Positives = 218/432 (50%), Gaps = 20/432 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L+  +   +    Y  PTP+Q   IP+++ R DV   AQTG+GKTA+F++P+L 
Sbjct: 201 TFDDIKLTDIIRMNIALTRYDTPTPVQKYAIPIIIGRRDVMACAQTGSGKTAAFLVPILN 260

Query: 62  ILEKG-----------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
            + +            ++R + P  LIL PTRELA Q+ D  +K+     +   ++ GG 
Sbjct: 261 QIYEKGPAAYNVGPKLQSRRKYPLGLILAPTRELATQIYDEAKKFAYRSRVRPCVVYGGS 320

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN- 169
               Q + LE+G  +L+ TPGR++D   RGK+ ++    LV+DEADRMLDMGF   I+  
Sbjct: 321 HVMDQIRDLEQGCHLLVATPGRLVDMLERGKIGLDFCRYLVLDEADRMLDMGFETQIRRI 380

Query: 170 ---ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
               +   P  RQTL+FSAT   E+Q ++ +FL N   + +    ST+E I    V    
Sbjct: 381 VEKDSMPPPGDRQTLMFSATFPKEIQMLARDFLDNYIFLAIGRVGSTSENITQKIVWVED 440

Query: 227 QYSKKCALLQQLLQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
           +  +   L         +       ++F   KK   +L   L   G+ V +IHG+  QR 
Sbjct: 441 RNKRSYLLDLLNATPIRSQPAESLILVFVETKKGADSLEEFLYSNGYPVTSIHGDRTQRE 500

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L +F+ G   ++VA+ +AARGLDIP V HV N+D+P+  E Y+HRIGRTGR G  G
Sbjct: 501 REDALKSFRSGNTPVLVATAVAARGLDIPHVTHVINYDLPSDVEEYVHRIGRTGRMGNLG 560

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
            A +    ++      + +LI +    L G L S+          + N ++  +      
Sbjct: 561 LATSFFNDKNRNLTRDLMELITESKQELPGWLESMATDFRMSSGRRSNTSKGGSRF--GG 618

Query: 404 TGFDRRKKNYSS 415
            GF  R    +S
Sbjct: 619 AGFGSRDYRTTS 630


>gi|320588174|gb|EFX00649.1| ATP-dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 1617

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 150/445 (33%), Positives = 224/445 (50%), Gaps = 2/445 (0%)

Query: 1   MDFADLGL-SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M F  + L S  ++  +  AG+  PT IQ KTIP  +  HDV G A TG+GKTA+F+LP+
Sbjct: 263 MSFQAMRLFSRPILRGIAAAGFDTPTQIQAKTIPFGIGGHDVVGQAVTGSGKTAAFLLPI 322

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  L      V   R +IL PTRELA Q      K      +T+AL +GG  F++    L
Sbjct: 323 LERLLHRPTNVPKTRVVILTPTRELAVQCHKVAVKLAAFTPITMALTVGGTSFKSSEASL 382

Query: 120 ERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
               D++I TPGR +DH        ++ +EILV+DEADRML  GF   +  I   +P  R
Sbjct: 383 RSRPDIVIGTPGRFIDHMRNSPSFAVDGVEILVLDEADRMLQDGFADELNEIVQTLPRGR 442

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM   + ++    L  P RI+ +  S TA T+   FV        +       
Sbjct: 443 QTLLFSATMGASVDQLIRVGLSRPVRIQADDKSRTAGTLTQAFVRLRQGREDRRLGYLVE 502

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +     + IIF  +K+++          G +   +HGNI Q  R+  L +F+ G +Q 
Sbjct: 503 LCTTLYRDHAIIFFREKRSIHEARIVFGLLGLTCEELHGNIKQAERIASLESFRRGEVQF 562

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ASDLA+RGLDI  V  V N++VP   ++YIHRIGRT RAGR G A T+V+++D K + 
Sbjct: 563 LLASDLASRGLDIKGVETVINYEVPKNLDDYIHRIGRTARAGRRGLAVTIVSEKDRKFVK 622

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            + K +    D    +          + + Q    R     P  +  +  +    +   +
Sbjct: 623 EVVKAMRAGGDKEQKEKKGKTVGETGLPMPQQVRIRSQQVDPAAADRWQAKIDAMAEDVA 682

Query: 419 HIPLKESEKISKLQQDIQENDADSL 443
            I  +E +  +  Q +++    ++L
Sbjct: 683 EIVAEERQVRAMAQAEMEVTRGENL 707


>gi|195579332|ref|XP_002079516.1| GD23992 [Drosophila simulans]
 gi|194191525|gb|EDX05101.1| GD23992 [Drosophila simulans]
          Length = 547

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 123/382 (32%), Positives = 202/382 (52%), Gaps = 9/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    L   +V  V  +GY  PTPIQ + IP++    D+   AQTG+GKTASF+LP+++
Sbjct: 132 NFTSADLRGIIVENVKKSGYKVPTPIQKRAIPVITAGRDLMACAQTGSGKTASFLLPIIS 191

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P+ +I+ PTRELA Q+ D   K+     L + ++ GG  F  QN  +
Sbjct: 192 KLLDDPQDLEFGRPQAVIVSPTRELAIQIFDEARKFAYETYLKIGIVYGGTSFRHQNDCI 251

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G+ VLI T GR+LD  +R  +   +   +V+DEADRMLDMGF   ++ + + V    Q
Sbjct: 252 TKGSHVLIATLGRLLDFVDRTFVTFEDTRFVVLDEADRMLDMGFSEGMRKLMTHVTMRPQ 311

Query: 180 TL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
               +FSAT  +++Q+++  FL N                      T  + SK     + 
Sbjct: 312 HQTLMFSATFPEDIQRLAGEFLNNYVF----VAIGMVGGACSDVKQTIYEVSKFNKRAKL 367

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +   ++     I+F   K+    L   L +  F   +IHG+  Q  R + L +FK G+++
Sbjct: 368 MEILREEADGTIVFVETKRGADFLASYLSETEFPTTSIHGDRLQSQREQALRDFKNGSMK 427

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+ +A+RGLDI ++ HV N+D+P   ++Y+HRIGRTGR G +G+A T    +  + I
Sbjct: 428 VLIATSVASRGLDIKNIKHVINYDMPKNIDDYVHRIGRTGRVGNNGRATTFFDPDQDRLI 487

Query: 358 DA-IEKLIEKKVDWLNGDLSSL 378
            A + K+++     +   L +L
Sbjct: 488 AADLIKILDGAGQTVPEFLRNL 509


>gi|171463843|ref|YP_001797956.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193381|gb|ACB44342.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 482

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 132/468 (28%), Positives = 225/468 (48%), Gaps = 15/468 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L+  ++  V + G+ + T +Q + IP  L   D+   +QTG+GKTA+F+LP++ 
Sbjct: 20  EFQNFALAASLLKNVAELGFTQATAVQAQVIPAALAGSDLLVNSQTGSGKTAAFLLPLIN 79

Query: 62  ILEKGRARVR------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            L +             P+ L+L PTRELA QVA +     +         + G     +
Sbjct: 80  QLIEDNPNNSPVPSRAQPKVLVLCPTRELAQQVAADAVNLVRGMKGIRIATVMGGMPYGK 139

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +  +GA +++ TPGR+LD  +   + +++++ LVIDEADRMLDMGF   ++ I     
Sbjct: 140 QIQALKGALLVVATPGRLLDLCDSKAIRLDDVKQLVIDEADRMLDMGFADDLEAIDKRCA 199

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              QTL+FSAT   ++  ++     N KRIE+         IE       +   K     
Sbjct: 200 GRNQTLMFSATFAPKIMSLANELTTNAKRIELAHAGEKHANIEQKLHWADSMSHKHKL-- 257

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            + + +   +   ++F + +     +  +L   G+   A+HG + Q  RM+ L + ++G 
Sbjct: 258 LEHILADADLDQAVVFASTQVESEKIADTLRANGYEATALHGAMPQAVRMRRLESLRKGR 317

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            +++VA+D+AARG+D+P + HV NF +P + E+Y HRIGRTGRAGR+G A TLV   D  
Sbjct: 318 TKILVATDVAARGIDVPRISHVINFGLPMKPEDYTHRIGRTGRAGRNGVAITLVEHRDRA 377

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            I  IE+  ++ +  +   ++ L P  +            N        G D R ++   
Sbjct: 378 KIRNIERFTQQDI--VASVIAGLEPQAKLSFGGGGGRPGGNRSGGGGHYGSDARSESRFG 435

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
                      + +   +  +  D+   G     P F  PK+ G+  +
Sbjct: 436 GGGRSGDSRPARSAD-SRPTRSGDSRPAG----GPRFAKPKSGGQRRN 478


>gi|161502252|ref|YP_001569364.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863599|gb|ABX20222.1| hypothetical protein SARI_00280 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 444

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 137/388 (35%), Positives = 210/388 (54%), Gaps = 6/388 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP + 
Sbjct: 5   TFSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAIQVADHARELAKHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT   D ++  +E  L++P  +     +   + I   +        K      + L
Sbjct: 185 MLFSATLEGDAIKDFAERLLEDPVEVSATPSTRERKKIHQWYYRADNFEHKVAL--LKHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             QD     I+F  +++ V  L  +L   G + C + G + Q  R + +    +G + ++
Sbjct: 243 LKQDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIPDV HV NFD+P   + Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLLLK 362

Query: 360 IEKLIEKKVDWLNGDL--SSLNPPLEKI 385
           I + IE+ +     D    +   P EK+
Sbjct: 363 IGRYIEEPLKARVIDELRPTTRAPSEKL 390


>gi|161521775|ref|YP_001585202.1| ATP-dependent RNA helicase DbpA [Burkholderia multivorans ATCC
           17616]
 gi|189352063|ref|YP_001947690.1| ATP-dependent RNA helicase DbpA [Burkholderia multivorans ATCC
           17616]
 gi|221210620|ref|ZP_03583600.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD1]
 gi|160345825|gb|ABX18910.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
           ATCC 17616]
 gi|189336085|dbj|BAG45154.1| ATP-independent RNA helicase [Burkholderia multivorans ATCC 17616]
 gi|221169576|gb|EEE02043.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD1]
          Length = 464

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 149/422 (35%), Positives = 219/422 (51%), Gaps = 24/422 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P ++  +   GYV  TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L+ 
Sbjct: 9   FSTLPLTPAMLANLEQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + +IL PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 69  LDA---RRFDVQAMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLQLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ F     R                    Y     +      +L +
Sbjct: 186 LFSATYPDGIAKLSQQF----LRSPKEVKLEERHDDSKIRQRFYEVTETERLHAVGMLLN 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 242 HYRPVSTIAFCNTKQQCRDLIDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQAGWALSLASMDEMGRVGAIE 361

Query: 362 KLIEKKVDW------LNGDLSSLNPPLEKIDIAQHNHARKNNPIP-------QKSTGFDR 408
           +  ++ V+W           + L PP+E + I      RK+   P           GFD 
Sbjct: 362 QAQKRDVEWRPLSELTPASDAPLLPPMETLQIL---GGRKDKIRPGDVLGALTGDAGFDG 418

Query: 409 RK 410
           ++
Sbjct: 419 KQ 420


>gi|238788233|ref|ZP_04632028.1| ATP-dependent RNA helicase srmB [Yersinia frederiksenii ATCC 33641]
 gi|238723820|gb|EEQ15465.1| ATP-dependent RNA helicase srmB [Yersinia frederiksenii ATCC 33641]
          Length = 438

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 143/443 (32%), Positives = 230/443 (51%), Gaps = 16/443 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP + 
Sbjct: 5   NFSELDLDERLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K+  L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I +   + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT   + +++ +E  L  P  +E +      + I   +        K        L
Sbjct: 185 LLFSATLEGEAIREFAERILNEPVELEADPSRRERKKILQWYYRADNIEHKTAL--LVHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  ++  IIF   ++ V  L   L + G +   + G + Q  R + +    +G + ++
Sbjct: 243 LKQPEVQKSIIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDVASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHDHLLLGK 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK-KNYSSQKS 418
           I + +++ +      +  L P       +    + K    P K     R++ K    +K+
Sbjct: 363 IGRYLKEPLK--PRVVDELRP-------SSKAPSEKTTGKPSKKVLAKRKELKEAGKEKA 413

Query: 419 HIPL--KESEKISKLQQDIQEND 439
            + +  ++++ + K +Q   + D
Sbjct: 414 KVKVRHRDAKNVGKRRQPKDKPD 436


>gi|328848641|gb|EGF97845.1| hypothetical protein MELLADRAFT_46164 [Melampsora larici-populina
           98AG31]
          Length = 659

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 110/390 (28%), Positives = 197/390 (50%), Gaps = 7/390 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L LSP    A+ + G+   T +Q +TIP ++   DV G A+TG+GKT +F++P + 
Sbjct: 128 EFTSLNLSPGTAKAIEEMGFKHMTEVQARTIPPLMTGRDVLGAARTGSGKTLAFLVPAVE 187

Query: 62  ILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-L 119
           +L + + + R     +I+ PTRELA Q+    ++  K+++ T A+ IGG   +A+ +K +
Sbjct: 188 MLSRLQFKPRNGTGAIIVSPTRELALQIFGVAQELMKHHSQTFAITIGGANRKAEAEKLI 247

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS-LVPFTR 178
           +    ++      +    N    + +N++ L+IDEADR+L++GF   ++ I S L    R
Sbjct: 248 KGVNLLISTPGRLLDHLQNTKGFVFSNLKALIIDEADRILEIGFEDEMRKIISLLPSENR 307

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q++LFSAT T ++Q ++   L+          +    T++          S+K  LL   
Sbjct: 308 QSMLFSATQTTKVQDLARISLRPGPLYINVDANKQDATVQGLEQGYVVCESEKRFLLLFT 367

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   K  I+F +   +V      L         +HG   Q+ R      F      +
Sbjct: 368 FLKKSLNKKVIVFFSSCNSVKYHGELLNYIDIPALDLHGKQKQQKRTNTFFEFCNAPTGI 427

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT RAG+ G++   +   ++  + 
Sbjct: 428 LLCTDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVGRTARAGKSGRSLLFLLPSELGFLR 487

Query: 359 AIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
            + KL +  ++  +     L+++   L K+
Sbjct: 488 FL-KLAKVPLNEYSFPTDKLANVQTQLTKL 516


>gi|312217179|emb|CBX97128.1| similar to pre-mRNA-splicing ATP-dependent RNA helicase prp28
           [Leptosphaeria maculans]
          Length = 815

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 132/419 (31%), Positives = 221/419 (52%), Gaps = 32/419 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++++ GL  K++  V   GY +P+ IQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 395 NWSESGLPDKLMRIVEQVGYTEPSAIQRAAIPIALQCRDLIGVAVTGSGKTAAFILPLLV 454

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + +        R   P  L+L PTRELA Q+     K+        A+++GG   E Q+
Sbjct: 455 YISQLPPLSAANRHDGPYALVLAPTRELAQQIEVEARKFAAPLGFNTAVIVGGHSIEEQS 514

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT----- 171
            +++ GA+++I TPGR++D   R  L+++    +++DEADRM+DMGF   +  I      
Sbjct: 515 FQMQAGAEIIIATPGRLVDCIERRVLVLSQCTYVIMDEADRMIDMGFEEPVNKILDALPV 574

Query: 172 ---------------SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
                              F RQT++++ATM   +++++  +L+ P  + +       ET
Sbjct: 575 NNEKPDSELAEDANAMKRGFYRQTMMYTATMPTAVERIARKYLRRPAIVTIGNVGEAVET 634

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
           +    V       ++   LQ++L S++     I+F N K+N   +   ++  GFS   +H
Sbjct: 635 V-EQRVEHIQGEERRKKRLQEILSSEEFRPPIIVFVNIKRNCDAIARDIKHMGFSAVTLH 693

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G+  Q  R   L++ KEG   ++VA+DLA RG+DI DV  V NF++    E+Y HRIGRT
Sbjct: 694 GSKTQEQREAALASLKEGRTDVLVATDLAGRGIDITDVSLVVNFNMATSIESYTHRIGRT 753

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           GRAG+ G A T    ED   +  +++++      +   +S +   L K + AQ    ++
Sbjct: 754 GRAGKSGVAITFWGNEDADVLYDLKQML------MKSQISKVPEDLRKHEAAQQKGKKR 806


>gi|268573013|ref|XP_002641484.1| Hypothetical protein CBG09775 [Caenorhabditis briggsae]
          Length = 814

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 121/380 (31%), Positives = 184/380 (48%), Gaps = 5/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA       ++ A+  + Y +PTPIQ   IP  L   DV GIA+TG+GKTA+++ P + 
Sbjct: 264 SFAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIV 323

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK- 118
                        P  +I+ PTRELA QV    +++ K YN+ V    GG     Q+ + 
Sbjct: 324 HTMDQPDLKEGEGPVAVIVVPTRELAIQVYQEAKRFCKVYNINVICAYGGGSKWEQSNEL 383

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              GA++++CTPGRI+D              LV DEADRM DMGF   +++I+  V   R
Sbjct: 384 QNEGAEMVVCTPGRIIDLVKMEATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPDR 443

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT   ++++++ + L +P RI           IE        Q  K   L++ L
Sbjct: 444 QCLMFSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVYVMQNQDVKFHWLIRNL 503

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++     K  I    +  +         K    V         ++             Q+
Sbjct: 504 VEFASLGKVLIFVTKKLDSEDLAKKLKLKDFDIVLLH--GDMLQAERNENLLKFRKKSQI 561

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI ++  V NFD+    + ++HRIGRTGRAG  G A+TLV ++DI+ + 
Sbjct: 562 LVATDVAARGLDISEIRTVVNFDMARDIDTHVHRIGRTGRAGHRGTAYTLVTEKDIETVG 621

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + K +E     +   L  L
Sbjct: 622 HLVKNLESVSQEVPKPLMDL 641


>gi|295101481|emb|CBK99026.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
           L2-6]
          Length = 395

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 199/366 (54%), Gaps = 7/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M +++L  S  +  AV   G+ + T +Q KTIP++L   DV   A TGTGKT +F +P+ 
Sbjct: 1   MLYSELQCSEAIHKAVERMGFAEMTEVQEKTIPVMLAGRDVIAKAPTGTGKTCAFGIPVA 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++     ++ P+ +IL PTRELA Q+A+              + +  G   E Q K+L
Sbjct: 61  EHIDPA---LKAPQAVILAPTRELAQQIAEELTGLTYFMPEVQVVCVYGGANMEKQAKRL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  +++ TPGR++DH+    + ++++  +V+DEAD ML+MGF   +++I  L+   + 
Sbjct: 118 AEGCQIVVATPGRLMDHYKHHNIDLDHVTQVVLDEADEMLNMGFYKDVKHIIGLMKARKS 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +FSAT++ E+  +   + ++ + I   T     E+             +        +
Sbjct: 178 LSMFSATISREVMDIGWMYQKDAEEI---TVQPKEESQPKITQYMLETSGRNKLSDLAQI 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  K  ++FC+ K N   L + L + GFSV  +HG++ Q  R +I+ NF++G + ++
Sbjct: 235 IIGEGYKRVMVFCDTKFNTAALANQLARLGFSVDCLHGDLSQNERNRIMQNFRDGKLNVL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  V N+DVP   E+Y HRIGRTGRA + G ++     E+ K +  
Sbjct: 295 VATDVAARGIDVSDVDAVINYDVPGDNEHYTHRIGRTGRAKKEGVSYLFYVPEEKKRVQE 354

Query: 360 IEKLIE 365
           + +L  
Sbjct: 355 LLRLTR 360


>gi|311739401|ref|ZP_07713236.1| ATP-dependent RNA helicase RhlE [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311305217|gb|EFQ81285.1| ATP-dependent RNA helicase RhlE [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 432

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 138/433 (31%), Positives = 218/433 (50%), Gaps = 11/433 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-L 60
            FADLGL  ++V  + + G  +P PIQ   IP  L   DV G   TG+GKT +F LP+  
Sbjct: 3   TFADLGLPQRLVHVLHNEGITEPFPIQKAAIPDALAGKDVLGRGPTGSGKTYTFGLPILA 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +   G ++   PR LIL PTRELA Q+    ++      L V  ++GG+      + L 
Sbjct: 63  RLAGTGASKPAHPRALILAPTRELATQIHQRLDEPAATLGLRVLAVVGGVNINHHIRSLA 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R  DVL+ TPGR  D  ++GKL ++ ++I  +DEAD+M DMGF+P ++ +  L P   Q 
Sbjct: 123 RPVDVLVATPGRAQDLIDQGKLHLDAVQITALDEADQMADMGFLPQVRKLLRLTPAQGQR 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++ K+ E FL +P         +  +++ H       + ++   +L+    
Sbjct: 183 LLFSATLDGDVNKLVEQFLHDPVVHSTAPVQAAVDSMSHHLFFVGERPARNEVVLR---- 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K  V      L + G +   +HG+  Q +R + +  F +G+I ++V
Sbjct: 239 IAARQGKTIMFMRTKHGVDRQVKKLRRAGINAYPLHGDKGQGARTRAIEGFADGSIPVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV  V + D P   + Y+HR GRT R G  G   TLV  E  K +DA+
Sbjct: 299 ATDIAARGIDIADVSLVVHVDPPAEHKAYLHRAGRTARGGAAGTVITLVMDEQRKEVDAL 358

Query: 361 EK---LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ---KSTGFDRRKKNYS 414
            K   +   + D  + D  +  P L++I  A+  +     P  Q   +      +K N+ 
Sbjct: 359 IKKAGVTATEHDISHRDNPAGAPVLKEITGARKPNGPALPPPGQAVPQKPAKSVKKSNFQ 418

Query: 415 SQKSHIPLKESEK 427
            ++S   +    +
Sbjct: 419 RRRSGGKVARRRR 431


>gi|195123476|ref|XP_002006232.1| GI18677 [Drosophila mojavensis]
 gi|193911300|gb|EDW10167.1| GI18677 [Drosophila mojavensis]
          Length = 787

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 144/453 (31%), Positives = 233/453 (51%), Gaps = 16/453 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP + 
Sbjct: 158 SFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTVE 217

Query: 62  I-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +      + R L+L PTREL AQV    ++  +  ++ V L IGG+  +AQ   L 
Sbjct: 218 RLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIEVGLAIGGLDVKAQETVLR 277

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  D++I TPGR++DH         ++IE+L++DEADRMLD  F   ++ I +    TRQ
Sbjct: 278 QNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQ 337

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM+++++ ++   L  P ++ VN     A  +   F+            +   L
Sbjct: 338 TMLFSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASL 397

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + ++F   KK    L   L   G     +HGN+ Q+ R++ L  FKE  I ++
Sbjct: 398 ICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVL 457

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  
Sbjct: 458 IATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKD 517

Query: 360 IEKLIEKK----------VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           I K  E            ++     L++L P ++  +I     A +     ++      R
Sbjct: 518 IIKNAESSVKNRIIPPEIIEKYRNKLTALEPEIQ--NILDEEQAERQLAKTEQQLSKTER 575

Query: 410 K--KNYSSQKSHIPLKESEKISKLQQDIQENDA 440
           K     + +++    K+  +  K +  +  +D 
Sbjct: 576 KLLGQPNERRTWFQTKQQRENEKARLALTNDDE 608


>gi|194017071|ref|ZP_03055683.1| ATP-dependent RNA helicase DbpA [Bacillus pumilus ATCC 7061]
 gi|194010939|gb|EDW20509.1| ATP-dependent RNA helicase DbpA [Bacillus pumilus ATCC 7061]
          Length = 480

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 145/434 (33%), Positives = 227/434 (52%), Gaps = 34/434 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    LS  +  A+    +  PTP+Q +T+ +   R D+   +QTG+GKTA++ LP+  
Sbjct: 5   QFDQYPLSDDLKQALKALHFHTPTPVQHETLSVAFSRQDLIVKSQTGSGKTAAYGLPICE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    +   P+ LIL PTRELA QV  +    G+   +  A + G  PF+AQ  +L +
Sbjct: 65  MVDWAENK---PQALILVPTRELAMQVKQDLTSLGRLKRIKAAAIYGKAPFQAQKVELAQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++  TPGR+LDH  +G L + N++  V+DEAD ML+MGFI  + +I   +P  R ++
Sbjct: 122 KNHIVCGTPGRVLDHLEKGTLSLENLKFFVLDEADEMLNMGFIEQVSSIIEYLPPKRMSM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM+DE++K+SE FLQ+PK IE+    ++   I H          +    L Q    
Sbjct: 182 LFSATMSDEMKKLSEQFLQSPKVIEIAREETSVPQITH---TVIETEEEAKFSLLQRTIV 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFCN +  V  L   L+        IHG + Q  R  ++  FK G  + ++A
Sbjct: 239 IENPDSCIIFCNTQDRVNELTMKLDDWDVPCDKIHGGMRQEDRFAVMDEFKNGEFRYLIA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ D+ HV ++D+P   E YIHR GRTGRAG+ GK    + K     ID ++
Sbjct: 299 TDIAARGIDVSDMTHVIHYDLPYEKERYIHRTGRTGRAGKSGKTIAFMTKNAKPLIDELK 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           +  E  +D+         P   K D  QH              GF+        +K   P
Sbjct: 359 Q--EAGIDF------KTQPYPTKEDAEQHVE------------GFE--------EKIETP 390

Query: 422 LKESEKISKLQQDI 435
           +++  K + +++DI
Sbjct: 391 VQKENKQAGVEKDI 404


>gi|317030312|ref|XP_001392304.2| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Aspergillus
           niger CBS 513.88]
 gi|143359932|sp|A2QQA8|PRP5_ASPNC RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
          Length = 1180

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 129/438 (29%), Positives = 213/438 (48%), Gaps = 18/438 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL  + +  +   GY K T IQ + IP ++   DV G+A+TG+GKT +F++PM  
Sbjct: 548 KWSQCGLGVQTLDVIDKLGYEKTTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFR 607

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++  R    +  P  LI+ PTRELA Q+  + + + K  NL      GG P + Q   L
Sbjct: 608 HIKDQRPLDNMEGPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADL 667

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D           +  +  +V+DEADRM DMGF P +  I + +  
Sbjct: 668 KRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRP 727

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT    ++ ++   L  P  I V   S  A  I                L  
Sbjct: 728 DRQTVLFSATFPRNMEALARKTLTKPIEIVVGGKSVVAPEITQIVEVRNDDQKFVRLLEL 787

Query: 237 ---QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                   ++     +IF ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 788 LGNLYSSDENEDARALIFVDRQEAADALLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKA 847

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 848 GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 907

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            ++   I K +++    +   +  L +  LEK+   +   +         ++GF  +   
Sbjct: 908 ERYSVDIAKALKQSGQKVPEPVQKLVDAFLEKVKAGKEKAS---------ASGFGGKGLE 958

Query: 413 YSSQKSHIPLKESEKISK 430
              Q+         +  K
Sbjct: 959 RLDQERDAARMRERRTYK 976


>gi|134076811|emb|CAK39865.1| unnamed protein product [Aspergillus niger]
          Length = 1191

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 129/438 (29%), Positives = 213/438 (48%), Gaps = 18/438 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL  + +  +   GY K T IQ + IP ++   DV G+A+TG+GKT +F++PM  
Sbjct: 559 KWSQCGLGVQTLDVIDKLGYEKTTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFR 618

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++  R    +  P  LI+ PTRELA Q+  + + + K  NL      GG P + Q   L
Sbjct: 619 HIKDQRPLDNMEGPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADL 678

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D           +  +  +V+DEADRM DMGF P +  I + +  
Sbjct: 679 KRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRP 738

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT    ++ ++   L  P  I V   S  A  I                L  
Sbjct: 739 DRQTVLFSATFPRNMEALARKTLTKPIEIVVGGKSVVAPEITQIVEVRNDDQKFVRLLEL 798

Query: 237 ---QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                   ++     +IF ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 799 LGNLYSSDENEDARALIFVDRQEAADALLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKA 858

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 859 GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 918

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            ++   I K +++    +   +  L +  LEK+   +   +         ++GF  +   
Sbjct: 919 ERYSVDIAKALKQSGQKVPEPVQKLVDAFLEKVKAGKEKAS---------ASGFGGKGLE 969

Query: 413 YSSQKSHIPLKESEKISK 430
              Q+         +  K
Sbjct: 970 RLDQERDAARMRERRTYK 987


>gi|323490080|ref|ZP_08095301.1| ATP-dependent RNA helicase yqfR [Planococcus donghaensis MPA1U2]
 gi|323396376|gb|EGA89201.1| ATP-dependent RNA helicase yqfR [Planococcus donghaensis MPA1U2]
          Length = 431

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 127/441 (28%), Positives = 216/441 (48%), Gaps = 15/441 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +    P ++ AV   G+ +PT IQ + +P +L+     G + TGTGKT SF++P++ 
Sbjct: 3   KFNEYPFKPFLLEAVEKLGFTEPTQIQKEMMPHILKGTSAIGQSHTGTGKTHSFIIPIVE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+     I  PTREL  Q+ +  +K      + V   IGG   +    KL+ 
Sbjct: 63  RIDVSKQEVQAV---ISAPTRELGTQIFNELQKLVVGSGIEVKSFIGGTDKQRSINKLKT 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+ D      LL++  +IL++DEAD   D+GFI  I  +   +    +  
Sbjct: 120 QPHIVVGTPGRLRDLVKENALLVHTGKILIVDEADLAFDLGFIEEIDQVAGKMKDDLEMY 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+ ++L+   + ++++P  +++     TA+ ++          SKK     Q +  
Sbjct: 180 VFSATIPEKLKPFLKKYMESPIHVKIGDKRPTADGLDF---YLVPVRSKKKMDRLQDVMK 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIF N + N   +   L K+G  V  +HG++  R R+K++   ++   Q +VA
Sbjct: 237 VINPYLAIIFVNTRTNADYVADQLAKEGIRVGRVHGDLAPRERVKMMRQIRDLEYQYIVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+DI  V HV N+++P   E +IHR+GRT RAG  G A TL   E+   I  IE
Sbjct: 297 TDLAARGIDIQGVSHVINYELPEDLEFFIHRVGRTARAGMKGLAITLFKPEEDDAIVRIE 356

Query: 362 KL---IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           K+    ++K D + G+   L     K   ++    RK N    K+     + K       
Sbjct: 357 KMGIPFQQK-DIVKGEFVDL-----KERHSRTTRTRKVNEADAKAKTMVHKPKKVRPMYK 410

Query: 419 HIPLKESEKISKLQQDIQEND 439
                + ++I K+++      
Sbjct: 411 KKMKWKMDEIKKMERRKNRKK 431


>gi|299471815|emb|CBN79482.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 660

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 124/398 (31%), Positives = 207/398 (52%), Gaps = 17/398 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L   ++ A+   G  +PTPIQ++ +P+ L   D+ GIA TG+GKT +F +P++ 
Sbjct: 218 SFREMKLPDPMLAALEAKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIM 277

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN-------LTVALLIGG 109
           +  +   ++ +     P  +IL P+RELA Q  D  + + K+ +        TV  + G 
Sbjct: 278 LALEEEMKLPVVGGEGPFGVILCPSRELARQTFDVVDYFCKHLHRGGFPELRTVLCIGGE 337

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                 +    +G   ++ TPGRI D  +  K+  +  + + +DE DRMLDMGF   +Q 
Sbjct: 338 DKRSQIDPIQRQGVHCIVATPGRISDLLHTHKVHFDLCKYICLDEGDRMLDMGFDEEVQK 397

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I +     RQTLLFSATM     +  ++F ++     V      A       +       
Sbjct: 398 IMNHFKQQRQTLLFSATMP----QKFQDFAKDVLVKPVLVNVGRAGAANLDVIQEVEYVK 453

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           ++  ++  L   Q T     IFC +K++V ++   L  +G    +IHG  +Q  R + + 
Sbjct: 454 QEAKIVYLLECLQKTAPPVCIFCEKKQDVDDIHEYLLLKGVDAVSIHGGKEQEERNEAIK 513

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FKEG   +++A+D+AA+GLD PD+ HV NFD+P+  ENY+HRIGRTGR G+ G A T +
Sbjct: 514 LFKEGVKDVLIATDIAAKGLDFPDIQHVINFDMPDEIENYVHRIGRTGRCGKTGVATTFI 573

Query: 350 AKE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
            K  +   +  ++ L+ +    +   L +L  P +++D
Sbjct: 574 NKMVEESALLDLKHLLMEAQQRVPPVLMALEDPDQEMD 611


>gi|261251266|ref|ZP_05943840.1| ATP-dependent RNA helicase DbpA [Vibrio orientalis CIP 102891]
 gi|260938139|gb|EEX94127.1| ATP-dependent RNA helicase DbpA [Vibrio orientalis CIP 102891]
          Length = 458

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 147/418 (35%), Positives = 231/418 (55%), Gaps = 15/418 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L P++   +   GY + TPIQ + +P+VL   DV G  +TG+GKTA+F L +L+
Sbjct: 4   SFKTLNLRPELTETLDSLGYTEMTPIQQQALPMVLAGKDVIGQGKTGSGKTATFSLGLLS 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+   TL+L PTRELA QVA       +  +    L +  G+P   Q   LE
Sbjct: 64  NLNVKRFRVQ---TLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH ++G++ ++ +  LV+DEADRMLDMGF   I  I   VP  RQT
Sbjct: 121 HGAHILVGTPGRILDHMSKGRISLDELNTLVLDEADRMLDMGFEDAIDTIIDAVPEKRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D +  ++   + NP+ ++V +   T +             +++     + L 
Sbjct: 181 LLFSATFPDNIDSLAAKVMVNPEMVKVES---THQKSTIEQKFYKLNTTEERDDALEALL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++FCN KK V N+   L  +GFSV  +HG+++QR R + L+ F   +I ++V
Sbjct: 238 LTHKPESSVVFCNTKKEVQNVTDELGHRGFSVVELHGDMEQREREQALTMFANKSISILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+  ++++   +  I
Sbjct: 298 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAFSFYSEKEEYRVARI 357

Query: 361 EKLIEKKVDWLNGDLSSLN----PPLEKIDIA--QHNHARKNNPIP--QKSTGFDRRK 410
           ++ ++  ++        +     P ++ I I   +    R  + +    K  G D +K
Sbjct: 358 DEYMDIAINASELPEKPVERAFYPKMQTIQILGGKKQKVRAGDILGALTKQAGLDGKK 415


>gi|170046392|ref|XP_001850751.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus]
 gi|167869172|gb|EDS32555.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus]
          Length = 641

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 123/382 (32%), Positives = 203/382 (53%), Gaps = 10/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + GL   ++  V  +GY+KPTPIQ   IP+++ + D+   AQTG+GKTA+F+LP++ 
Sbjct: 218 SFNESGLRDYLLTNVRKSGYLKPTPIQKYAIPIIMDKRDLMACAQTGSGKTAAFLLPIIN 277

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P  +++ PTRELA Q+++   K+ +   L V +  GG     Q   +
Sbjct: 278 TLLNDNDDMTPGNPFVVVVAPTRELALQISEEARKFARGTILKVVVAYGGTATRHQIDNV 337

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP----YIQNITSLVP 175
             G  +L+ TPGR+LD  +R  +  + ++ +V+DEADRMLDMGF+P     + + T    
Sbjct: 338 NNGCHILVATPGRLLDFVDRQAVTFDRVKFVVLDEADRMLDMGFMPAVEKMMNHETMKSK 397

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTL+FSAT   ++Q+++  FL N   + V      +  +E           +     
Sbjct: 398 EERQTLMFSATFPGQIQELAGQFLNNYIFVAVGIVGGASSDVEQNIYEVTKFQKR---KK 454

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            + +   +  K  ++F   K+N   L   L +  F   +IHG+  QR R + L +FK G 
Sbjct: 455 LEEILESNDPKGTLVFVETKRNADYLASLLSETKFPTTSIHGDRLQREREEALRDFKSGK 514

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDI 354
           + +++A+ +AARGLDI +V HV N+D+P   ++Y+HRIGRTGR G  G+A +    + D 
Sbjct: 515 MYILIATSVAARGLDIRNVAHVINYDLPKGIDDYVHRIGRTGRVGNKGRATSFFDMENDS 574

Query: 355 KHIDAIEKLIEKKVDWLNGDLS 376
                + K++ +    +   L 
Sbjct: 575 AIAGDLVKILTQAGQQVPDFLQ 596


>gi|291166420|gb|EFE28466.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Filifactor alocis
           ATCC 35896]
          Length = 381

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 118/371 (31%), Positives = 199/371 (53%), Gaps = 5/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L  + + A+ D     PT IQ K IP + + +D+   AQTGTGKT +F++P+L
Sbjct: 1   MKFKEFNLRKEHILALQDMYIENPTDIQSKVIPKMRKGNDILAHAQTGTGKTLAFLIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +    + ++    LI+ PTREL+ Q+ D  + + K  +L+V    GG     Q +KL 
Sbjct: 61  ESIPDISSGIKS---LIIVPTRELSNQITDVLKYFQKYRSLSVVNASGGHNITTQIQKLS 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+LD    G +   NI+  VIDE D++L  GF+  +  + +  P  +Q 
Sbjct: 118 SNTDIVVGTPGRVLDLLRNGNINFKNIDSFVIDEMDQILAFGFLEDVILLMNKTPRKKQV 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT++ +++K+S+ F+ NP  +         + I         + S+K + L   ++
Sbjct: 178 CMFSATVSQDVKKLSKQFMLNPIYLTAERGEVVLDNISQLI--VQTKDSRKLSSLMYSIE 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     I   ++K         +  Q  ++  +HG + Q  R  IL  F+E  +Q ++
Sbjct: 236 KINPFMCMIFCNSKKNAEKLYSDFIHHQYKNMELLHGEMSQNKRENILKKFRELKVQYLI 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL+ARG++I  V HV N+D+P   E YIHRIGRTGR  + G A + V ++DI ++  I
Sbjct: 296 TTDLSARGMNIEGVSHVINYDIPRDVEYYIHRIGRTGRMNQIGYAISFVTEKDIANMKKI 355

Query: 361 EKLIEKKVDWL 371
           +K I+K +  +
Sbjct: 356 QKRIKKTIPVV 366


>gi|201067640|gb|ACH92926.1| vasa protein [Parhyale hawaiensis]
          Length = 707

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 126/387 (32%), Positives = 195/387 (50%), Gaps = 16/387 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL   ++  +  AGY  PTPIQ   IP ++   D+ G AQTG+GKTA+F+LP+L 
Sbjct: 272 TFGASGLRDLLISNIERAGYKTPTPIQRVCIPTIMAGRDIMGCAQTGSGKTAAFLLPILH 331

Query: 62  -------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                        +    P  +++ PTRELA Q+ +   K+  +  +   +  GG    +
Sbjct: 332 GILASGGGNSGSMSSTAEPSAVVVAPTRELAIQIHNEARKFALDSIVRTVVCYGGASMNS 391

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++L+ G  VL+ TPGR+ D   RG++  +++  LV+DEADRMLDMGFI  I+ I +  
Sbjct: 392 QYRQLQNGCAVLVATPGRLNDFVTRGRVSFSSVRYLVLDEADRMLDMGFIGDIEKIVNHQ 451

Query: 175 PFTRQTLL----FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                       FSAT  +E+Q ++ N LQN     V T  +    +    +    Q  +
Sbjct: 452 TMPAVGQRQTLLFSATFPEEIQTLACNHLQNYVFYAVGTVGAANTDVCQEVLNVPRQQKR 511

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  + +      +     +IF   K+    L   L  Q  +  +IHG+  Q  R + L+ 
Sbjct: 512 EVLMSKIEEFMANGDNKVLIFVETKRTADFLATLLSSQQLNSTSIHGDRFQSQREEALAQ 571

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+ +AARGLDI  V HV N+D+P   + Y+HRIGRTGR G  G A +   
Sbjct: 572 FKAGIRSILVATAVAARGLDIRGVSHVINYDLPKEVDEYVHRIGRTGRVGNKGHAVSFYD 631

Query: 351 KE-DIKHIDAIEKLI----EKKVDWLN 372
           +E D      + K++    ++  +WL 
Sbjct: 632 EEQDGALAKNLVKILTDASQEVPEWLK 658


>gi|327265107|ref|XP_003217350.1| PREDICTED: ATP-dependent RNA helicase DDX39-like [Anolis
           carolinensis]
          Length = 427

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 164/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY     ++V      I  +    K    
Sbjct: 106 IEPTDGQVSVLVMCHTRELAFQISKEYERFSKYMSAVKVSVFFGGLSIKKDEDVLKKNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L N    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 166 HIVVGTPGRILALVRNKTLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDTEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMTQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDESDAKILNDVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRFEVNVAELPEEID 418


>gi|223056271|gb|ACM80368.1| vasa [Lytechinus variegatus]
          Length = 679

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 129/374 (34%), Positives = 207/374 (55%), Gaps = 13/374 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + GL   V+  V  A Y KPTP+Q   IP++    D+   AQTG+GKTA+F+LP++T
Sbjct: 231 SFEEAGLDETVLENVRKARYAKPTPVQKYAIPIIGAGLDLMACAQTGSGKTAAFLLPIIT 290

Query: 62  ILEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +      V        P  LI+ PTRELA+Q+ +   K+ +N +L   ++ GG     Q
Sbjct: 291 NMITQSGCVSCFSVVQEPLALIVSPTRELASQIQNEARKFCRNTSLRPVVIYGGTSVSHQ 350

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++++ G  +L+ TPGR+ D   RG + +  ++ L++DEADRM+DMGF P IQ +     
Sbjct: 351 TREVQNGCSILVATPGRMHDFIGRGYIGLGKLKYLILDEADRMVDMGFGPEIQKLIDHPH 410

Query: 176 FTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                  QTL+FSAT   E+Q+ +  +L +   + V      A  IE   ++      ++
Sbjct: 411 MPPKGERQTLMFSATFPPEIQEKARMYLNDYLFLTVGRVGGAASDIEQRVLSVKQYEKRE 470

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             +  ++L+ Q+     ++F   K+N   L   L +  F   +IHG+  Q+ R + L +F
Sbjct: 471 KLM--EILRDQNEDDRTLVFVETKRNADFLATLLSQSDFHATSIHGDRQQQEREEALRDF 528

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-A 350
           K G   ++VA+ +AARGLDIP V HV N+D+P+  + Y+HRIGRTGR G  G++ +   A
Sbjct: 529 KIGRAPVLVATSVAARGLDIPKVKHVVNYDLPSDIDEYVHRIGRTGRVGNTGRSTSFYDA 588

Query: 351 KEDIKHIDAIEKLI 364
            +D+    A+ K++
Sbjct: 589 DKDVGIARALIKIL 602


>gi|51245828|ref|YP_065712.1| ATP-dependent RNA helicase DbpA [Desulfotalea psychrophila LSv54]
 gi|50876865|emb|CAG36705.1| probable ATP-independent RNA helicase (DbpA) [Desulfotalea
           psychrophila LSv54]
          Length = 469

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 147/382 (38%), Positives = 222/382 (58%), Gaps = 11/382 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M  F  L LS  +   +   GY + TPIQ +++P VL+  D+   A+TG+GKTA+F + +
Sbjct: 1   MSAFTTLALSKAMTDNLEIMGYHEMTPIQAESLPHVLEGEDLLAQAKTGSGKTAAFGIGL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKK 118
           L  L+    RV+   TL++ PTRELA QVA    +     +N+ +  L GG+P + Q   
Sbjct: 61  LHNLDVSLFRVQ---TLVMCPTRELAEQVAGELRRIARFKHNIKITTLCGGMPIKPQLAS 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE  A +++ TPGRI  H  R  L ++++  LV+DEADRMLD+GF   +  I S +P  R
Sbjct: 118 LEHQAHIVVGTPGRIEQHLKRESLNLDHVTTLVLDEADRMLDIGFADTLDAIISYLPRRR 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT  DE+ ++SE F    +R+ V+         +  F   + + +   + +   
Sbjct: 178 QTLLFSATFPDEILRLSEQFQYKAQRVIVDVEHEENSIQQEFFECKWDKKAAIVSRILA- 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  ++ +IFCN K N  ++  +LE +GFS  AIHG++DQR R ++L  F  G+  +
Sbjct: 237 ---THKPESTLIFCNTKANCRDIAEALEAKGFSALAIHGDLDQRERTEVLVRFSNGSSPI 293

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARGLDI  +  V N D+P  +E YIHRIGRTGRAG+ G AF+L+   +   ++
Sbjct: 294 MVATDVAARGLDINGLSAVINVDLPFESEVYIHRIGRTGRAGKEGLAFSLMEPGEEFRLE 353

Query: 359 AIEKLIEKKVDWLNGDLSSLNP 380
            I +L+    D+   D+ +L P
Sbjct: 354 EINRLMGT--DFKISDVEALAP 373


>gi|67521618|ref|XP_658870.1| hypothetical protein AN1266.2 [Aspergillus nidulans FGSC A4]
 gi|74657573|sp|Q5BDW4|PRP5_EMENI RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|40746703|gb|EAA65859.1| hypothetical protein AN1266.2 [Aspergillus nidulans FGSC A4]
 gi|259488412|tpe|CBF87827.1| TPA: Pre-mRNA-processing ATP-dependent RNA helicase prp5 (EC
           3.6.1.-) [Source:UniProtKB/Swiss-Prot;Acc:Q5BDW4]
           [Aspergillus nidulans FGSC A4]
          Length = 1173

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 129/438 (29%), Positives = 214/438 (48%), Gaps = 18/438 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL  + +  +   G+   T IQ + IP ++   DV G+A+TG+GKT +F++PM  
Sbjct: 542 KWSQCGLGIQTLDVIDKLGFASLTSIQAQAIPAIMSGRDVIGVAKTGSGKTMAFLIPMFR 601

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++  R    +  P  LI+ PTRELA Q+  + + + K  NL      GG P + Q  +L
Sbjct: 602 HIKDQRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAEL 661

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D           +  +  +V+DEADRM DMGF P +  I S V  
Sbjct: 662 KRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILSNVRP 721

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT    ++ ++   L  P  I V   S  A  I         +      L  
Sbjct: 722 DRQTVLFSATFPRNMEALARKTLTKPIEIVVGGRSVVAPEITQIVEVCNEEKKFVRLLEL 781

Query: 237 Q---LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                   ++     +IF ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 782 LGNLYSTDENEDARSLIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKA 841

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 842 GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 901

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            ++   I K +++    +   +  L +  LEK+   +   +         ++GF  +   
Sbjct: 902 ERYSVDIAKALKQSGQEVPEAVQKLVDSFLEKVKAGKEKAS---------NSGFGGKGLE 952

Query: 413 YSSQKSHIPLKESEKISK 430
              Q+         +  K
Sbjct: 953 RLDQERDAARMRERRTYK 970


>gi|301111750|ref|XP_002904954.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262095284|gb|EEY53336.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 847

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 125/380 (32%), Positives = 206/380 (54%), Gaps = 3/380 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLSP V   V+  GY  PTPIQ K++P+VL   D   +A+TG+GKTA+F++PM+  
Sbjct: 38  FQHLGLSPLVFRGVMAMGYKVPTPIQRKSLPIVLSGKDCVAMARTGSGKTAAFLVPMVEK 97

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++   ++   R ++L PTRELA Q     ++  K  +L +AL++GG   + Q + +   
Sbjct: 98  LKEHSTKIG-VRAVVLSPTRELAVQTLRFAKQLSKFTSLKMALIVGGEGMDQQFEAIASN 156

Query: 123 ADVLICTPGRILD-HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DVL+ TPGR++          +  +E +V DEADR+ +MGF   +Q I   +P +RQTL
Sbjct: 157 PDVLVATPGRLMHLLQEIPDFNLKAVEYVVFDEADRIFEMGFAEQLQEILKNMPTSRQTL 216

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L + +   L +P+ I ++  +  +E ++  F  T     K    L  + + 
Sbjct: 217 LFSATLPKALVQFARAGLSDPELIRLDVENKISENLKMAF-FTVRSLDKPALFLYMVREF 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   + +V  L   L          +G++DQ SR   L  F+     L++ 
Sbjct: 276 LPKGDQTIVFAATRHHVEFLHALLAANHIEASCAYGDMDQASRKINLGKFRAKKTNLLIV 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP + +V N+  P  A+ ++HR+GR  RAGR G AF+ V  ++   +  + 
Sbjct: 336 TDVAARGIDIPLLNNVLNYSFPPTAKLFVHRVGRAARAGRSGTAFSFVDPDETPFMVDLH 395

Query: 362 KLIEKKVDWLNGDLSSLNPP 381
             I ++++  + + S+   P
Sbjct: 396 LYIGRRLEDSSPEESAGTKP 415


>gi|242022378|ref|XP_002431617.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28, putative
           [Pediculus humanus corporis]
 gi|212516925|gb|EEB18879.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28, putative
           [Pediculus humanus corporis]
          Length = 788

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 135/436 (30%), Positives = 222/436 (50%), Gaps = 40/436 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ +  +  +++  +   GY + TPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P++ 
Sbjct: 361 NWKEAKIPQEILDIIERVGYTEATPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLIM 420

Query: 62  ILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            ++      +     + P  +IL PTRELA Q+ +   K+G    +   +++GG+  E Q
Sbjct: 421 WIQSLPKIQRMEDADQGPYAIILAPTRELAQQIEEETNKFGNPLGIRTVVVVGGLSREEQ 480

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 481 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 540

Query: 176 -------------------------FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
                                      RQT++F+ATM   +++++  +L+ P  + + + 
Sbjct: 541 VTNLKPDTEEAEDDKFLLANYNSKKKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSV 600

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               E +E        Q  ++          +  +   IIF NQKK    L   LEK G+
Sbjct: 601 GKPVERVEQIVHIVSEQDKRRKLCELLARGVEPPV---IIFVNQKKGADVLARGLEKLGY 657

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           + C +HG   Q  R   LS+ K GT  ++VA+D+A RG+DI DV  V N+D+    E+Y 
Sbjct: 658 NACTLHGGKGQEQREYALSSLKNGTKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYT 717

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+HG A +   K+D      +++LI      L+  +S+  P L     AQH
Sbjct: 718 HRIGRTGRAGKHGIAVSFCTKDDSGLFYDLKQLI------LSSPISTCPPELLNHPDAQH 771

Query: 391 NHARKNNPIPQKSTGF 406
                     ++   F
Sbjct: 772 KPGTVVTKKRREEKIF 787


>gi|328949667|ref|YP_004367002.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
           DSM 14884]
 gi|328449991|gb|AEB10892.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
           DSM 14884]
          Length = 517

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 203/371 (54%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L P+V  A+ + G+   TP+Q  T+P  L+  DV   A+TGTGKT +F LP+ 
Sbjct: 1   MQFNELSLKPEVQQALRERGFTTLTPVQAATLPHALEGRDVIAQARTGTGKTLAFALPIA 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE  RA+ R PR L+L PTRELA QVA   +    +    V  + GG  +  Q + L 
Sbjct: 61  ERLEPARAKGRAPRALVLAPTRELALQVAGELDWAAPHLE--VLTVYGGTGYGQQAQALR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR LD+  RG L +  +E++V+DEAD ML MGF   ++ + +     RQT
Sbjct: 119 RGCDVVVATPGRALDYLRRGVLDLARVEVVVLDEADEMLSMGFEEDVEALLAAAVSARQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSATM    ++++E  L++P        +   +             +     +   + 
Sbjct: 179 LVFSATMPSWARRLAERHLKDPF-----VANLVKDEAVTYRELAIEAPTATRIAVLSDVL 233

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K     L  +L  +  +  A+HG++ Q +R ++++ F++G ++++V
Sbjct: 234 HAYGAGRAIVFTRTKAETDALATALAGRRHAAEAVHGDLSQAARERVVARFRKGLVRVLV 293

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+P+V  V ++ +P R E Y HR GRTGRAGR G    L    + + +  +
Sbjct: 294 ATDVAARGLDVPEVELVVHYRLPERVEVYQHRSGRTGRAGRTGTVVLLYGPRERRTVADL 353

Query: 361 EKLIEKKVDWL 371
           E+ + ++ + L
Sbjct: 354 ERALRRRFERL 364


>gi|255326979|ref|ZP_05368055.1| dead/deah box helicase [Rothia mucilaginosa ATCC 25296]
 gi|255296196|gb|EET75537.1| dead/deah box helicase [Rothia mucilaginosa ATCC 25296]
          Length = 565

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 141/410 (34%), Positives = 209/410 (50%), Gaps = 17/410 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD G+   +  A+   G   P PIQ  T+P+ L   D+ G A+TGTGKT  F LP + 
Sbjct: 15  SFADFGVRQDISDALAAVGITSPFPIQELTLPVALSGQDIIGQAKTGTGKTLGFGLPTIQ 74

Query: 62  ILEKGRARVRM-------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ LIL PTRELA QV ++     K  N  VA L GG+P E 
Sbjct: 75  RVVGRDDEGWADLEYPGAPQALILVPTRELAIQVGEDLAIAAKLRNARVATLYGGVPIEP 134

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L RG +V + TPGRI+D + +G L +  ++I+V+DEAD MLD+GF P ++ I S +
Sbjct: 135 QAELLRRGLEVAVGTPGRIIDLYQQGFLNLKQVKIVVLDEADEMLDLGFQPSVEKILSYL 194

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ++LFSATM   +  ++  ++  P RI    P   ++T        Y  +      
Sbjct: 195 PEDRQSMLFSATMPGPVIAMARQYMTKPMRISAADPEDASKTKASIRQVVYRAHHLDKDE 254

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +         +IF   K++   +   L  +GF+   +HG+++Q +R + L  F+ G
Sbjct: 255 MIGRILRATGRGRTVIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRTG 314

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N  VP   + Y+HR GRTGRAG  G A TLV  +D+
Sbjct: 315 KVDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNEGTAVTLVDWDDL 374

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
                I   +E  V            P+E    ++H     N P   K  
Sbjct: 375 PRWKVINDALELGVPE----------PVETYSSSEHLFHDLNIPAGTKGR 414


>gi|225450277|ref|XP_002267581.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 663

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 135/386 (34%), Positives = 203/386 (52%), Gaps = 24/386 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+++ L   +   +    YVKPTP+Q   IP+ +   D+   AQTG+GKTA+F  P+++
Sbjct: 218 SFSEIDLGDALNLNIRRCKYVKPTPVQRHAIPISIAGRDLMACAQTGSGKTAAFCFPIIS 277

Query: 62  ILEKGRA-------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            + KG+        R   P  LIL PTREL+ Q+ D  +K+     + V +  GG P   
Sbjct: 278 GIMKGQYAQRPRGSRTAYPLALILSPTRELSCQIHDEAKKFSYQTGVRVVVAYGGAPINQ 337

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + LERG D+L+ TPGR++D   R ++ +  ++ L +DEADRMLDMGF P I+ I   +
Sbjct: 338 QLRDLERGVDILVATPGRLVDLLERARISLQMVQYLALDEADRMLDMGFEPQIRRIVEQM 397

Query: 175 PFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                   QT+LFSAT   E+Q+++ +FL N   + V      +  +             
Sbjct: 398 DMPPRGVRQTMLFSATFPKEIQRLASDFLANYIFLAVGRSDKRSHLM------------- 444

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
                Q+   +       ++F   KK    L H L   GF   +IHG+  Q+ R   L  
Sbjct: 445 DLLHAQRENGTHGKQALTLVFVETKKGADALEHWLCINGFPATSIHGDRSQQEREHALRL 504

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G A     
Sbjct: 505 FKSGATPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFN 564

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLS 376
           + +      + +L+++    +   LS
Sbjct: 565 ENNSSLARGLAELMQESNQEVPAWLS 590


>gi|119499912|ref|XP_001266713.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
 gi|143019652|sp|A1CW14|HAS1_NEOFI RecName: Full=ATP-dependent RNA helicase has1
 gi|119414878|gb|EAW24816.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
          Length = 622

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 124/411 (30%), Positives = 203/411 (49%), Gaps = 13/411 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL+ K + A+ D G+   T IQ +TIP +L   DV G A+TG+GKT SF++P + 
Sbjct: 141 KFTELGLTEKTLKAINDMGFDTMTEIQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVE 200

Query: 62  ILEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + R    +I+  PTRELA Q+     +  + ++ T  ++IGG    A+ +KL 
Sbjct: 201 MLSALRFKPRNGTGVIVVSPTRELALQIFGVARELCQYHSQTYGIVIGGANRRAEAEKLM 260

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-VPFTR 178
           +G ++LI TPGR +    N    +  N++ LVIDEADR+L++GF   ++ I  +     R
Sbjct: 261 KGVNLLIATPGRLLDHLQNTQGFIFKNLKTLVIDEADRILEVGFEDEMRQIVKILPSEER 320

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT T +++ ++   L+               T+E          + K  LL   
Sbjct: 321 QTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFLLLFS 380

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +    V      L      V  +HG   Q+ R      F       
Sbjct: 381 FLKRNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAKQGT 440

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R A   G++   +   ++  +
Sbjct: 441 LICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGANAKGRSLMFLQPSEVGFL 500

Query: 358 DAIEKLIEKKVDWLNGDLS-----SLNPPLEKIDIAQHNHARKNNPIPQKS 403
             ++   E +V  +  +       ++   LEK+ I Q+ +  K+     +S
Sbjct: 501 KHLK---EARVPVVEFEFPANKIVNVQSQLEKL-IGQNYYLNKSAKEGYRS 547


>gi|328706401|ref|XP_001950362.2| PREDICTED: putative ATP-dependent RNA helicase Pl10-like
           [Acyrthosiphon pisum]
          Length = 681

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 144/432 (33%), Positives = 218/432 (50%), Gaps = 20/432 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L+  +   +    Y  PTP+Q   IP+++ R DV   AQTG+GKTA+F++P+L 
Sbjct: 196 TFDDIKLTDIIRMNIALTRYDTPTPVQKYAIPIIVGRRDVMACAQTGSGKTAAFLVPILN 255

Query: 62  ILEKG-----------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
            + +            ++R + P  LIL PTRELA Q+ D  +K+     +   ++ GG 
Sbjct: 256 QIYEKGPAAYNVGPKLQSRRKYPLGLILAPTRELATQIYDEAKKFAYRSRVRPCVVYGGS 315

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN- 169
               Q + LE+G  +L+ TPGR++D   RGK+ ++    LV+DEADRMLDMGF   I+  
Sbjct: 316 HVMDQIRDLEQGCHLLVATPGRLVDMLERGKIGLDFCRYLVLDEADRMLDMGFETQIRRI 375

Query: 170 ---ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
               +   P  RQTL+FSAT   E+Q ++ +FL N   + +    ST+E I    V    
Sbjct: 376 VEKDSMPPPGDRQTLMFSATFPKEIQMLARDFLDNYIFLAIGRVGSTSENITQKIVWVED 435

Query: 227 QYSKKCALLQQLLQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
           +  +   L         +       ++F   KK   +L   L   G+ V +IHG+  QR 
Sbjct: 436 RNKRSYLLDLLNATPIRSKPAESLILVFVETKKGADSLEEFLYSNGYPVTSIHGDRTQRE 495

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L +F+ G   ++VA+ +AARGLDIP V HV N+D+P+  E Y+HRIGRTGR G  G
Sbjct: 496 REDALKSFRSGNTPVLVATAVAARGLDIPHVTHVINYDLPSDVEEYVHRIGRTGRMGNLG 555

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
            A +    ++      + +LI +    L G L S+          + N A+  +      
Sbjct: 556 LATSFFNDKNRNLTRDLMELITESKQELPGWLESMAVDFRMSSGRRSNGAKGGSRF--GG 613

Query: 404 TGFDRRKKNYSS 415
            GF  R    +S
Sbjct: 614 AGFGSRDYRTTS 625


>gi|330819324|ref|YP_004348186.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3]
 gi|327371319|gb|AEA62674.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3]
          Length = 465

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 145/405 (35%), Positives = 211/405 (52%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L LSP ++  +   GY + TPIQ  ++PL L   D+   A+TG+GKTA+F L +L+ 
Sbjct: 10  FSELALSPAMLANLEQLGYTEMTPIQAASLPLALAGQDLIAQAKTGSGKTAAFSLALLSR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + +IL PTRELA QVA    +  +       L +  G P   Q   LE 
Sbjct: 70  LDA---RRFDVQAMILCPTRELADQVAQEIRRLARAEENIKVLTLCGGTPMRPQAASLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  RG L +  +  LV+DEADRMLDMGF   I  +    P  R TL
Sbjct: 127 GAHIVVGTPGRIMDHLERGTLALGALNTLVLDEADRMLDMGFFDDIATVARQCPTERLTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K+S  FL++PK I++       +         Y     +       L +
Sbjct: 187 LFSATYPEGITKLSRQFLRDPKEIKLAEQHDARKI----RQRFYEVTEDERLHAVGQLLN 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 243 HYRPASTIAFCNTKQQCRDLLDVLSAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L +  ++  +  IE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGGIE 362

Query: 362 KLIEKKVDW------LNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           +   ++V+W             L PP+E + I      RK    P
Sbjct: 363 QAQGREVEWQPLASLTPASNEPLLPPMETLQIL---GGRKEKIRP 404


>gi|120564784|gb|ABM30181.1| VASA3n [Paragonimus westermani]
          Length = 606

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 138/393 (35%), Positives = 211/393 (53%), Gaps = 18/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L+  +   V  A Y +PTP+Q   IP++    D+   AQTG+GKTA+F++P+L 
Sbjct: 132 SFADLDLNRIIRNNVELAQYERPTPVQKHAIPIIASNRDLMACAQTGSGKTAAFLIPILN 191

Query: 62  IL------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            +             +   R + P  LIL PTRELA+Q+ ++  K+     +   +L GG
Sbjct: 192 RMIEEGPGDSLIATMETNRRKQFPVALILAPTRELASQIFEDARKFAYRSRIRPCVLYGG 251

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
               AQ  ++ +G ++L+ TPGR+ D   RG++ +++   L++DEADRMLDMGF P I+ 
Sbjct: 252 ADMRAQLIEVSKGCNLLVATPGRLTDAIERGRIGLDHCRFLILDEADRMLDMGFEPQIRR 311

Query: 170 ITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I            QTL+FSAT   E+Q ++++FL     + V    ST+E        ++
Sbjct: 312 IVEQDNLPPSGKRQTLMFSATFPHEIQMLAKDFLSRYIFLAVGRVGSTSEN--ITQSISW 369

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            +  KK   L  LL S D     ++F   K+   +L   L  Q F V +IHG+  Q  R 
Sbjct: 370 VEEDKKRDALVDLLSSSDPGVLTLVFVETKRGADSLEDYLFSQKFHVASIHGDRTQDDRE 429

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P+  E Y+HRIGRTGR G  G A
Sbjct: 430 LALPCFRNGRTPILVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRVGNLGIA 489

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            +    ++      + +L+E+    +   L +L
Sbjct: 490 TSFFNDKNRNLARGLVELLEEVNQNVPSWLRAL 522


>gi|53716164|ref|YP_106468.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei ATCC 23344]
 gi|67639524|ref|ZP_00438373.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei GB8 horse 4]
 gi|254203477|ref|ZP_04909838.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei FMH]
 gi|254205355|ref|ZP_04911708.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei JHU]
 gi|52422134|gb|AAU45704.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei ATCC 23344]
 gi|147745716|gb|EDK52795.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei FMH]
 gi|147754941|gb|EDK62005.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei JHU]
 gi|238520075|gb|EEP83538.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei GB8 horse 4]
          Length = 465

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 150/405 (37%), Positives = 220/405 (54%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 10  FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + L+L PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 70  LDA---RRFDVQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ FL++PKR+++      ++         Y     +      LL +
Sbjct: 187 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKI----RQRFYEVTEDERLHAVGLLLN 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 243 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E Y+HRIGRTGRA + G A +L +  ++  +  IE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 362

Query: 362 KLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           + + ++V W        G  + L PP+E + I      RK+   P
Sbjct: 363 QALAREVKWHPLAELKAGGDAPLLPPMETLQIL---GGRKDKIRP 404


>gi|67623565|ref|XP_668065.1| ATP-dependent RNA helicase [Cryptosporidium hominis TU502]
 gi|54659251|gb|EAL37837.1| ATP-dependent RNA helicase [Cryptosporidium hominis]
          Length = 361

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 115/363 (31%), Positives = 181/363 (49%), Gaps = 7/363 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
            + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+FV+P+L  +     +  + +
Sbjct: 2   GIYEKGFERPSPIQEESIPVALAGKDILARAKNGTGKTAAFVIPLLEKINT---KKNIIQ 58

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            LIL PTRELA Q +   ++ GK+ N+   +  GG        +L     VL+ TPGRIL
Sbjct: 59  GLILVPTRELALQTSSIVKQLGKHINVQCMVSTGGTSLRDDILRLNNPVHVLVGTPGRIL 118

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D  N+    ++   + ++DEAD++L   F P I+ +   +P  RQ LL+SAT    ++  
Sbjct: 119 DLSNKKVCNLSGCFMFIMDEADKLLSPEFQPIIEELIEFLPKERQILLYSATFPVTVKG- 177

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
              F                 T++           K+       L S+  +   IIFCN 
Sbjct: 178 ---FKDKYLANAHEINLMDELTLKGVTQYYAFVEEKQKLHCLNTLFSKLQINQAIIFCNS 234

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
              V  L   + + G S   IH  + Q  R ++  +F+ G  + +V+SDL  RG+DI  V
Sbjct: 235 VTRVELLAKKITELGSSCFYIHARMLQSHRNRVFHDFRNGACRCLVSSDLITRGIDIQSV 294

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
             V NFD P  +E Y+HRIGR+GR G  G A  L+  ED  ++  IEK +  ++  +   
Sbjct: 295 NVVINFDFPKYSETYLHRIGRSGRFGHLGLAINLITYEDRYNLYRIEKELATEISPIPAQ 354

Query: 375 LSS 377
           + S
Sbjct: 355 IDS 357


>gi|66820759|ref|XP_643949.1| hypothetical protein DDB_G0274325 [Dictyostelium discoideum AX4]
 gi|74927179|sp|Q86IZ9|DDX52_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx52; AltName:
           Full=DEAD box protein 52
 gi|60472102|gb|EAL70055.1| hypothetical protein DDB_G0274325 [Dictyostelium discoideum AX4]
          Length = 668

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 120/423 (28%), Positives = 216/423 (51%), Gaps = 13/423 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           +F+ L     +   ++  + + GY +P+PIQ++ IP++L+  +V  IA TG+GKTASF +
Sbjct: 196 EFSQLENRFKVRKYLLNNINEIGYKEPSPIQMQVIPILLKEREVVAIAPTGSGKTASFSI 255

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           P+L  L + +       ++I+ PTRELA Q+  NF    K     + +L   +  ++ N+
Sbjct: 256 PILQALYEPKKEGFR--SVIIAPTRELAQQIYRNFRLLSKGKPFRICVLSKNLHNQSTNE 313

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +  D+LI TP R++       L +N +E LV DEAD++ D  F   +  + +     
Sbjct: 314 NLIKNYDILITTPLRLVYLIKENLLSLNKVEYLVFDEADKLFDKNFQEQVDIVVTACQNP 373

Query: 178 RQTLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           +  +  FSATM  +++++  + ++NP +I +   ++ A T++   +    +  K  A+ Q
Sbjct: 374 KLKICLFSATMNQQVEELGHSIMKNPIKIIIGEQNAAAITVDQKLIYVGKEEGKLLAVRQ 433

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            + +  +     +IF   K+   +L   L   G +V  IH    Q  R  I+  F+ G I
Sbjct: 434 LIQKGLEPPI--LIFTQSKERAHDLFQELIFDGINVDVIHSERTQFQRDTIVKKFRMGKI 491

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++ ++L ARG+D   V  V NFD P+   +YIHRIGRTGRAGR G A+TL    D   
Sbjct: 492 WVLICTELMARGMDFKGVNFVINFDFPHTLASYIHRIGRTGRAGRPGVAYTLYTDADTPM 551

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN----PIPQKSTGFDRRKKN 412
           +  I   +++    +   + +L    +K    +     + +    P+ ++++   + +KN
Sbjct: 552 LPTIVHAMKQSGSHVPDWMLNLKVQGKKKQQYRLKGVERESFSTIPLSERTSSKFKLRKN 611

Query: 413 YSS 415
             S
Sbjct: 612 KKS 614


>gi|146319393|ref|YP_001199105.1| superfamily II DNA/RNA helicase [Streptococcus suis 05ZYH33]
 gi|146321596|ref|YP_001201307.1| superfamily II DNA/RNA helicase [Streptococcus suis 98HAH33]
 gi|253752416|ref|YP_003025557.1| helicase [Streptococcus suis SC84]
 gi|253754242|ref|YP_003027383.1| helicase [Streptococcus suis P1/7]
 gi|253756176|ref|YP_003029316.1| helicase [Streptococcus suis BM407]
 gi|145690199|gb|ABP90705.1| Superfamily II DNA and RNA helicase [Streptococcus suis 05ZYH33]
 gi|145692402|gb|ABP92907.1| Superfamily II DNA and RNA helicase [Streptococcus suis 98HAH33]
 gi|251816705|emb|CAZ52347.1| putative helicase [Streptococcus suis SC84]
 gi|251818640|emb|CAZ56475.1| putative helicase [Streptococcus suis BM407]
 gi|251820488|emb|CAR47236.1| putative helicase [Streptococcus suis P1/7]
 gi|292559021|gb|ADE32022.1| putative ATP-dependent RNA helicase [Streptococcus suis GZ1]
 gi|319758822|gb|ADV70764.1| superfamily II DNA/RNA helicase [Streptococcus suis JS14]
          Length = 447

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 116/380 (30%), Positives = 187/380 (49%), Gaps = 12/380 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D+ L P +  A+ +  +V+PT +Q K IP+VL   D+ G ++TG+GKT +F++P+ 
Sbjct: 1   MKFTDMKLKPYIQEALKEINFVQPTEVQEKLIPVVLSGRDLIGESKTGSGKTHTFLIPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   +V+     I  P+RELA Q+     +   + +  V +       +   +  +
Sbjct: 61  QKLNEELDQVQAV---ITAPSRELATQIYQAARQLASHSDTEVRVTNYVGGTDKNRQIDK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  +++ TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LQASQPHIVVGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI        +   +       
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEQIKTHTVISDTI---ENWLISTKGRDRNAQIL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K     L   L   G  V  IHG+I  R R ++++  K    Q
Sbjct: 235 EVTKLMQPYLAMIFVNTKTRADELHSYLTANGLRVAKIHGDIPPRERKRMMNQVKNLDYQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGIAITLYQPSDDADI 354

Query: 358 DAIEKLIEKKVDWLNGDLSS 377
             +EKL    + +L  ++ +
Sbjct: 355 RELEKL---NIKFLPKEMKN 371


>gi|332253180|ref|XP_003275725.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like [Nomascus
           leucogenys]
          Length = 474

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 100/375 (26%), Positives = 167/375 (44%), Gaps = 6/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 96  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 155

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V     L++  TRELA Q++  +E++ K          G     A        
Sbjct: 156 IEPVNGQVT---VLVMCHTRELAFQISKEYERFSKYMPSVKVSPSGWTGPGAAWFLQLCX 212

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
                     +    NR   L N    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 213 XXXXXXXXRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 272

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ +++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 273 FSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL--LDV 330

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 331 LEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 390

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 391 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 450

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 451 DRFEVNVAELPEEID 465


>gi|156375512|ref|XP_001630124.1| predicted protein [Nematostella vectensis]
 gi|156217139|gb|EDO38061.1| predicted protein [Nematostella vectensis]
          Length = 446

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 131/381 (34%), Positives = 193/381 (50%), Gaps = 3/381 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +      +       G+ +PT IQ +  P+ L   ++ GIAQTG+GKT SF+LP + 
Sbjct: 59  TFEESAFPDYIQSYFKREGFTEPTMIQAQGWPVALTGRNLVGIAQTGSGKTLSFILPGIV 118

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA QV +     GK+  L    + GG P   Q ++L
Sbjct: 119 HINHQPLLQPGDGPIVLVLCPTRELAQQVQEVAYSVGKHCKLRSTCIYGGAPKGPQIREL 178

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG ++ I TPGR++D     K  +     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 179 ERGVEICIATPGRLIDMLESRKTNLRRCTYLVLDEADRMLDMGFEPQIRTIIDQIRPDRQ 238

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCALLQQL 238
           TL++SAT   E+Q ++ +FL +   I V +   TA       V     + K    L    
Sbjct: 239 TLMWSATWPKEVQGLAHDFLSDYVHITVGSLGLTANHKILQIVDVCEDHEKEHKLLKLLE 298

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               +     +IF   K+    L   L   G+    IHG+  Q  R  +LS F++G   +
Sbjct: 299 EIMGEKENKTLIFTETKRRADELTRKLRSDGWPAMCIHGDKAQPERDWVLSEFRKGHAPI 358

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RGLDI D+  V NFD PN  E+Y+HRIGRT R+ R G ++T     + K   
Sbjct: 359 LVATDVASRGLDISDIKFVINFDFPNCTEDYVHRIGRTARSDRTGTSYTFFTVNNAKQAK 418

Query: 359 AIEKLIEKKVDWLNGDLSSLN 379
            +  ++++    +N  L +L 
Sbjct: 419 ELVSVLQEAKQHVNPKLLNLQ 439


>gi|312221299|emb|CBY01239.1| hypothetical protein [Leptosphaeria maculans]
          Length = 613

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 116/379 (30%), Positives = 194/379 (51%), Gaps = 6/379 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L LS + + A+ + G+   T IQ KTIP +L   DV G A+TG+GKT +F++P + 
Sbjct: 135 KFSELNLSDRTMEAIKNMGFETMTEIQQKTIPPLLSGKDVLGAAKTGSGKTLAFLIPAIE 194

Query: 62  ILEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + R    +I+  PTRELA Q+     +  + ++ T  ++IGG    A+ +KL 
Sbjct: 195 MLSAMRFKPRNGTGVIVVSPTRELALQIFGVARELMEKHSQTFGIVIGGANRRAEAEKLV 254

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G ++LI TPGR +    N    +  N++ L+IDEADR+L++GF   ++++  ++P  RQ
Sbjct: 255 KGVNLLIATPGRLLDHLHNTQGFVFKNLKSLIIDEADRILEVGFEDEMRSVIKILPSDRQ 314

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT T +++ ++   L+               T+E          S     L    
Sbjct: 315 TMLFSATQTTKVEDLARISLKPGPLYINVDYRKEHSTVEGLEQGYVICDSDTRFRLLFSF 374

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   K  I+F +   +V      L      V  +HG + Q+ R      F   T   +
Sbjct: 375 LKKHQKKKVIVFFSSCNSVKFYAELLNYIDLPVLELHGKLKQQVRTNRFFEFCNATSGTL 434

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHID 358
           + +D+AARGLDIP+V  V  FD P+   +YIHR+GRT R     G++   +   +I  + 
Sbjct: 435 ICTDVAARGLDIPEVDWVIQFDPPDDPRDYIHRVGRTARGSDGKGRSLMFLLPSEIGFLK 494

Query: 359 AIEKLIEKKVDWLNGDLSS 377
            ++   E +V  +  +L +
Sbjct: 495 LLK---EARVPLVEFELPA 510


>gi|295667643|ref|XP_002794371.1| ATP-dependent RNA helicase DBP4 [Paracoccidioides brasiliensis
           Pb01]
 gi|226286477|gb|EEH42043.1| ATP-dependent RNA helicase DBP4 [Paracoccidioides brasiliensis
           Pb01]
          Length = 816

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 125/454 (27%), Positives = 203/454 (44%), Gaps = 26/454 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL LS   +  +  + +   T IQ K +P  L+  D+ G A+TG+GKT +F++P+L +
Sbjct: 51  FSDLPLSEASLDGLSASHFKTLTSIQAKALPHALKGRDILGAAKTGSGKTLAFLVPLLEL 110

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         L+L PTRELA Q+ +   K G++++ +  L+IGG   + + ++L R
Sbjct: 111 LYRKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHSFSAGLVIGGKSLQEEQERLGR 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +           N I++LV+DEADR++DMGF   +  I   +P  RQT+
Sbjct: 171 MNILVCTPGRMLQHMDQTAAFDTNRIQLLVLDEADRIMDMGFQNTVDAIVEHLPKERQTM 230

Query: 182 LFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT T ++      +             SS      H          K   L   +  
Sbjct: 231 LFSATQTQKVSDLARLSLRDPEYISVHEAASSATPAKLHQNYIVTPLPEKLDTLWSFIRS 290

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S  +         ++   V       + G S+  +HG   Q +R+ I   F       + 
Sbjct: 291 SLKSKIMVFFSSGKQVRFVYESFRHMQPGISLLHLHGRQKQGARVDITKKFSVAKHACLF 350

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKHIDA 359
           A+D+AARGLD P V  V   D P  A+ YIHR GRT R  R+G+A   +   E+   +  
Sbjct: 351 ATDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFLDPTEEAAMLKR 410

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E   ++K+            P+EKI++         N +  ++  F      Y  QK+ 
Sbjct: 411 LE---QRKI------------PIEKINVRTKKQQSIKNQL--QNMCFKDPALKYLGQKAF 453

Query: 420 IPLKESEKISKLQQDI------QENDADSLGFRG 447
           I   +S  + K ++         E  A+SLG  G
Sbjct: 454 ISYVKSIHVQKDKEVFVVKDLPLEEYAESLGLPG 487


>gi|198456267|ref|XP_001360280.2| GA15282 [Drosophila pseudoobscura pseudoobscura]
 gi|198135552|gb|EAL24855.2| GA15282 [Drosophila pseudoobscura pseudoobscura]
          Length = 785

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 144/453 (31%), Positives = 233/453 (51%), Gaps = 16/453 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP + 
Sbjct: 158 SFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTLE 217

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L +      + R L+L PTREL AQV    ++  +  ++ V L IGG+  +AQ   L 
Sbjct: 218 RLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLR 277

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  D++I TPGR++DH         ++IE+L++DEADRMLD  F   ++ I +    TRQ
Sbjct: 278 QNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQ 337

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM+++++ ++   L  P ++ VN     A  +   F+            +   L
Sbjct: 338 TMLFSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASL 397

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + ++F   KK    L   L   G     +HGN+ Q+ R++ L  FKE  I ++
Sbjct: 398 ICRTFHDHCMVFVQTKKQAHRLHILLGLLGIRAGELHGNLTQQQRLESLKKFKEEQIDVL 457

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  
Sbjct: 458 IATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKD 517

Query: 360 IEKLIEKK----------VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           I K  E            ++     L++L P ++  +I     A +     ++      R
Sbjct: 518 IIKNAESTIKNRIIPPEIIEKYRKKLTALEPEIQ--NILDEEQAERQLAKTEQQLSKTER 575

Query: 410 K--KNYSSQKSHIPLKESEKISKLQQDIQENDA 440
           K     + ++     K+  +  K +  +  +D 
Sbjct: 576 KLLGQTNDKRGWFQTKQQREDEKNRLALTPSDE 608


>gi|195149497|ref|XP_002015694.1| GL11206 [Drosophila persimilis]
 gi|194109541|gb|EDW31584.1| GL11206 [Drosophila persimilis]
          Length = 785

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 144/453 (31%), Positives = 233/453 (51%), Gaps = 16/453 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP + 
Sbjct: 158 SFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTLE 217

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L +      + R L+L PTREL AQV    ++  +  ++ V L IGG+  +AQ   L 
Sbjct: 218 RLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLR 277

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  D++I TPGR++DH         ++IE+L++DEADRMLD  F   ++ I +    TRQ
Sbjct: 278 QNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQ 337

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM+++++ ++   L  P ++ VN     A  +   F+            +   L
Sbjct: 338 TMLFSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASL 397

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + ++F   KK    L   L   G     +HGN+ Q+ R++ L  FKE  I ++
Sbjct: 398 ICRTFHDHCMVFVQTKKQAHRLHILLGLLGIRAGELHGNLTQQQRLESLKKFKEEQIDVL 457

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  
Sbjct: 458 IATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKD 517

Query: 360 IEKLIEKK----------VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           I K  E            ++     L++L P ++  +I     A +     ++      R
Sbjct: 518 IIKNAESTIKNRIIPPEIIEKYRKKLTALEPEIQ--NILDEEQAERQLAKTEQQLSKTER 575

Query: 410 K--KNYSSQKSHIPLKESEKISKLQQDIQENDA 440
           K     + ++     K+  +  K +  +  +D 
Sbjct: 576 KLLGQTNDKRGWFQTKQQREDEKNRLALTPSDE 608


>gi|168043479|ref|XP_001774212.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674480|gb|EDQ60988.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 584

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 135/395 (34%), Positives = 205/395 (51%), Gaps = 18/395 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA++ L   +   +    Y KPTP+Q   IP+ L   D+   AQTG+GKTA+F  P++ 
Sbjct: 137 TFAEIDLGAALNENIRRCKYTKPTPVQRHAIPISLNGRDLMACAQTGSGKTAAFCFPIIA 196

Query: 62  ILEKGRA-------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            + +          R  +P  LIL PTREL +Q++D  +K+     + V +  GG P   
Sbjct: 197 GIMRNTPPGRPRGGRKALPLALILSPTRELTSQISDEAKKFAYQTGIRVVVCYGGAPVHN 256

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++LERG D+L+ TPGR+ D   R ++ ++ +  L +DEADRMLDMGF P I+ I   +
Sbjct: 257 QLRELERGVDILVATPGRLSDLLERARVSLSMVRYLTLDEADRMLDMGFEPQIRRIVEQM 316

Query: 175 PFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                   QT+LFSAT   E+Q+++ +FL N   + V    S+ E I            +
Sbjct: 317 DMPPAGERQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTELIVQRVEYVQDADKR 376

Query: 231 KCALLQQLLQ----SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN---IDQRS 283
              +     Q            ++F   KK    L   L + GF    IHG+      + 
Sbjct: 377 SMLMDLIHAQSALAPPGQTSLTLVFVETKKGADALEDWLCRMGFPATTIHGDRKVFPTQE 436

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L +F+ G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G
Sbjct: 437 REHALRSFRTGVTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 496

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            A     ++D     ++ +L+ +    + G L++ 
Sbjct: 497 VATAFFNEKDQSLARSLTELMTESSQEVPGWLTNF 531


>gi|3776005|emb|CAA09205.1| RNA helicase [Arabidopsis thaliana]
          Length = 451

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 160/376 (42%), Gaps = 3/376 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D+G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 72  FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 131

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V                     F  Y  +  ++V      I       K E  
Sbjct: 132 IEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECP 191

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +     +   L N    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 192 HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 251

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  I V+  +              ++  K        L   
Sbjct: 252 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNR--KLNDLLDA 309

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L    F    IH  + Q  R+    +FKEG  +++VA+
Sbjct: 310 LDFNQVVIFVKSVSRADELNKLLVGCHFPSICIHSGMSQEERLTRYKSFKEGHKRILVAT 369

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDAIE 361
           DL  RG+DI  V  V N+D+P+ A+ Y+HR+GR GR G  G A T V +  D + ++ ++
Sbjct: 370 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQ 429

Query: 362 KLIEKKVDWLNGDLSS 377
           +  E  +  L   + +
Sbjct: 430 ERFEVDIKELPEQIDT 445


>gi|167518760|ref|XP_001743720.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777682|gb|EDQ91298.1| predicted protein [Monosiga brevicollis MX1]
          Length = 787

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 123/365 (33%), Positives = 201/365 (55%), Gaps = 2/365 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V  A+   GY  PTPIQ KTIPL++   DV  +A+TG+GKTA+F++P+   
Sbjct: 4   FQAMGLSQAVARAINRKGYKVPTPIQRKTIPLLMAGQDVVAMARTGSGKTAAFLIPLFER 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   ARV   R L+L PTRELA Q     ++ G+  +L   L++GG   ++Q   +   
Sbjct: 64  LKNHSARVG-IRALVLSPTRELALQTFKFVKELGRFSDLRSILILGGDSMDSQFGDMHTN 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR L      +L +   E +V DEADR+ +MGF   ++ I + +P TRQT L
Sbjct: 123 PDIVVATPGRFLHLIVEMELSLVTTEYVVFDEADRLFEMGFAEQLREIMARLPDTRQTTL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L   +   L+ P  + ++  +   E ++  F     +  K   LL  L +  
Sbjct: 183 FSATLPKVLVDFARAGLKEPALVRLDADTKLPEQLQTQF-FHCRREDKPALLLYALREII 241

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  +IF   K +V  L   L K  F     +G++D  +R   ++ F+ G   +++ +
Sbjct: 242 PKGKLTVIFVATKHHVEFLRELLAKANFESTYSYGSLDPTARKINVAKFRNGKAPILLVT 301

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP + +V N+D P   + ++HR+GR  RAGR G A++ +  +++ ++  +  
Sbjct: 302 DVAARGIDIPMLDYVINYDFPAAPKLFVHRVGRVARAGRSGTAYSFIGNDELPYVVDLHV 361

Query: 363 LIEKK 367
            + +K
Sbjct: 362 FLGRK 366


>gi|32565321|ref|NP_498260.2| DEAD boX helicase homolog family member (ddx-23) [Caenorhabditis
           elegans]
 gi|14550364|gb|AAK67224.1|U13070_15 Hypothetical protein F01F1.7 [Caenorhabditis elegans]
          Length = 730

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 141/433 (32%), Positives = 208/433 (48%), Gaps = 34/433 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + G   +V  AV + GY++PTPIQ + IP+ LQ  DV G+A+TG+GKTA+F+LP+L 
Sbjct: 302 NWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLV 361

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +E+   R   P  +I+ PTRELA Q+ +   K+GK   +    +IGG   E Q
Sbjct: 362 WITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQ 421

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL  G +V+I TPGR+LD      LL+N    +++DEADRMLDMGF P +Q +   +P
Sbjct: 422 GMKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMP 481

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            T           +E      +  +  ++  + T + ++                     
Sbjct: 482 DTNMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSA 541

Query: 215 -ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            +  E      Y     +       +         IIF NQKK    L   L K GF   
Sbjct: 542 GKPTERVEQVVYMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPT 601

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            +HG   Q  R   L   KEGT  ++VA+D+A RG+D+ DV  V N+D+    E+Y HRI
Sbjct: 602 VLHGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRI 661

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           GRTGRAG+HGKA T +  +D      +++++      +   +SS  P L     AQ    
Sbjct: 662 GRTGRAGKHGKAITFLTPDDTAVYFDLKQVL------VESPVSSCPPELANHPDAQSKPG 715

Query: 394 RKNNPIPQKSTGF 406
              +   Q  T F
Sbjct: 716 VFTSKKRQDETLF 728


>gi|71659539|ref|XP_821491.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70886872|gb|EAN99640.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 595

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 118/398 (29%), Positives = 203/398 (51%), Gaps = 9/398 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP- 58
           +F  L   +   +   +   G+  PT +Q +  P++L+  D+ G+A+TG+GKT +F++P 
Sbjct: 111 NFDQLSAFVPAYLQKKLTAQGFTSPTAVQAQAWPILLRGRDMVGVAKTGSGKTLAFMVPA 170

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  I  +   R      +++       AQ  +   K    ++L    + GG P   Q   
Sbjct: 171 LAHIAMQEPLRTGDGPMVVVLAPTRELAQQIEQETKKVLPHDLRCGCVYGGAPKGPQLGI 230

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G  +L+ TPGR++D     ++    +  LV+DEADRMLDMGF P ++ I   +   R
Sbjct: 231 LRNGVHILVATPGRLIDFLEIKRVNFFRVTYLVLDEADRMLDMGFEPQVRAICGQIRPDR 290

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT   E+Q+++  F ++  RI V +    A            +++K      + 
Sbjct: 291 QTLMFSATWPKEIQRLAAEFQKDWIRINVGSTELLANKDVTQHFILTQEHAKMEE--LKK 348

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +    +  +IFC  K+   +L   L++ G+   AIHG+ +QR R  IL  F++     
Sbjct: 349 LLANHRNQRVLIFCKTKRTADDLEWQLKRWGYDAMAIHGDKEQRQREFILERFRKDPRLC 408

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH-- 356
           +VA+D+AARGLDI ++  V N+D P + ++Y+HRIGRTGRAG  G+AFTL+ K + +   
Sbjct: 409 LVATDVAARGLDIKELETVINYDFPMQIDDYVHRIGRTGRAGAKGEAFTLITKREQQITP 468

Query: 357 --IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
             +  +  ++++    +   L        +  + + N 
Sbjct: 469 AVVTELIAIVDRAQQQVPDWLREWGEQRPRYQVMKRNR 506


>gi|303390845|ref|XP_003073653.1| ATP-dependent RNA helicase [Encephalitozoon intestinalis ATCC
           50506]
 gi|303302800|gb|ADM12293.1| ATP-dependent RNA helicase [Encephalitozoon intestinalis ATCC
           50506]
          Length = 483

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 112/371 (30%), Positives = 188/371 (50%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + +   GL PK++  + D GY  P+P+Q+ +IP  L+  D+   ++ GTGKTAS+ +P+L
Sbjct: 112 VKWEIFGLKPKLLKRIQDIGYNFPSPVQVASIPHALKGRDMLVRSKNGTGKTASYTIPIL 171

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      ++     IL P RELA Q++ N ++  +   +  A ++GG   +    ++ 
Sbjct: 172 NAINPEELNIQGI---ILVPIRELALQISRNVKRLSEGMGVISAPIVGGTNMQDDIIRVS 228

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  V++ TPGRI+D   +   +++   ILV DEAD++LD+ F   +  +  ++P  R  
Sbjct: 229 NGVHVMVGTPGRIVDLIEKKIGVLSKKIILVFDEADKLLDVTFGETVTRLLDILPRERHI 288

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +      F++   R  +                       +  L  + L 
Sbjct: 289 LLYSATFPYFVTG----FIKRYMRDPLCLNLMKELVPVGVKQFYTIVKPSEKLLCLRSLL 344

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  +   +IFCN  K V  L   + + G     IH  + Q  R  +  NF +G  +++V
Sbjct: 345 LKLKINQCVIFCNNIKTVELLAMKVTEIGIPSYFIHSKMTQEDRNIVFHNFLKGKCKILV 404

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL  RG+D+P+  +V NFD+P   E+Y+HRIGR GR G  G A +LV  E+ + +  I
Sbjct: 405 ATDLITRGVDVPNTNYVINFDIPKSPESYLHRIGRAGRFGTPGVAISLVTTEEKEMLADI 464

Query: 361 EKLIEKKVDWL 371
           E  + K+V  L
Sbjct: 465 EVKLGKEVSPL 475


>gi|239831927|ref|ZP_04680256.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239824194|gb|EEQ95762.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 470

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 153/450 (34%), Positives = 243/450 (54%), Gaps = 12/450 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ++ IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 24  FAALGVTGILLKGVEAAGMTEPKPIQLQAIPHQLEGRDILGIAQTGSGKTAAFSLPILQK 83

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 84  IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKHAHISTALVLGGVSKLSQIKRIA 143

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 144 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHSERQT 203

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++ + L++P R+EV    +TA  I       +  ++K+   L   L 
Sbjct: 204 ALFSATMPKEIASLAGSLLRDPVRVEVAPQGTTAAEI---TQVVHPVHTKEKRRLLSALL 260

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               M++ I+F   K     +   LE+ G+ V AIHGN  Q +R + L+ F++G++++++
Sbjct: 261 GDKAMRSVIVFTRTKHGADAVVRHLERDGYEVAAIHGNKSQNARQRALNGFRDGSLRILI 320

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKHIDA 359
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 321 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPAAEESKLRA 380

Query: 360 IEKLIEKK--VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           +E++   K  +     +L+    P       +     +    PQK     RR    +   
Sbjct: 381 VERVTRSKLPIKDAPVELAPAPAPRAATPGERPQKTHRKGGTPQK----PRRAAPKAGDH 436

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRG 447
                  ++   K ++  +    ++ G  G
Sbjct: 437 RGAAHATADAAPKAKRPFRRKRRNANGNGG 466


>gi|255078160|ref|XP_002502660.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
 gi|226517925|gb|ACO63918.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
          Length = 611

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 142/400 (35%), Positives = 200/400 (50%), Gaps = 24/400 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F D     K+V A+L  GY  PTPIQ +  P+ ++  DV  IA+TG+GKT  F+LP    
Sbjct: 158 FEDAPFPRKLVAALLKQGYESPTPIQAQAWPIAVKGKDVIAIAKTGSGKTCGFLLPALAK 217

Query: 59  -----------MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                      M  +  + R    +P  ++L PTRELA Q+ D   K+       V  L 
Sbjct: 218 IVKQGATAAPDMEMVDGRFRPAAVVPHAIVLAPTRELAIQIGDECAKFCPAAGAKVVTLY 277

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLM-----NNIEILVIDEADRMLDMG 162
           GG     Q + L  GADVL+ TPGR+ D               N   +V+DEADRMLDMG
Sbjct: 278 GGASKGDQLRALRSGADVLVATPGRLHDFLAPPPGFSAPVSARNAHYVVLDEADRMLDMG 337

Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNP---KRIEVNTPSSTAETIEH 219
           F P I+ I  + P  RQTL+F+AT  D ++K+++ FLQ      RI       TA     
Sbjct: 338 FEPQIKKIIKMCPTARQTLMFTATWPDGVRKIADTFLQPDAALVRIGDGGDRLTANKSIT 397

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG-FSVCAIHGN 278
             +    +  K    +  L ++      GI+FC  K+    +   ++  G  S  AIHG+
Sbjct: 398 QTIEIVTEDQKLDRAIAVLKENLVDGARGIVFCGTKRRCDFIDRKMKAMGLRSAGAIHGD 457

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
            DQ  R   L  F++G   L+VA+D+AARGLDIP V  V  +D P + E+Y+HRIGRTGR
Sbjct: 458 KDQAEREYSLDLFRKGKAPLLVATDVAARGLDIPGVTVVLVYDFPLQVEDYVHRIGRTGR 517

Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           AG+ GKA     +ED      + +++E     +   L  +
Sbjct: 518 AGKEGKAHCFFTEEDAGAARELVQILEGAEQEVPERLREM 557


>gi|320589197|gb|EFX01659.1| dead deah box DNA helicase [Grosmannia clavigera kw1407]
          Length = 734

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 121/422 (28%), Positives = 198/422 (46%), Gaps = 35/422 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ +  L P+++  V   GY +PTPIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 304 NWRESPLPPRLLDVVEAVGYTEPTPIQRAAIPIALQGRDLIGVAVTGSGKTAAFLLPLLV 363

Query: 62  ILE-----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            ++        ++   P  LIL PTRELA Q+     K+   +  TV  ++GG   E Q 
Sbjct: 364 YIKELPPLDEISKNDGPYALILAPTRELAQQIESEARKFATPFGYTVVSIVGGHSLEEQA 423

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GA++++ TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +P 
Sbjct: 424 YALRNGAEIVVATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEDPLNKILDAMPT 483

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ--------- 227
             +                       +   + T +      +                  
Sbjct: 484 ANEKPDTDEAEDARAMTQYLGGKIRYRETMMYTATMPPVVEKIAKRYLRRPAIVTIGNVG 543

Query: 228 ---------------YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
                            ++   LQ++LQS       I+F N K+N   +   + + GF+ 
Sbjct: 544 EAVETVEQRVEFVSGEDRRKKRLQEILQSGQFAAPIIVFVNIKRNCEMVAKDVRQMGFTT 603

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
             +HG+  Q  R   L   ++G   ++VA+DLA RG+D+ DV  V NF++    E Y HR
Sbjct: 604 VTLHGSKTQDQREAALQALRQGKADVLVATDLAGRGIDVADVSLVINFNMATSVEQYTHR 663

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T +  ED   +  ++++I K        +S +   L + + AQ   
Sbjct: 664 IGRTGRAGKSGVAITFLGGEDSDVLYDLKQMISK------SSISKVPDELRRHEAAQQKP 717

Query: 393 AR 394
            +
Sbjct: 718 TK 719


>gi|296086337|emb|CBI31778.3| unnamed protein product [Vitis vinifera]
          Length = 568

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 125/375 (33%), Positives = 212/375 (56%), Gaps = 6/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++ + LG++ ++V A+ + G  K  PIQ   +   +Q  D+ G A+TGTGKT +F +P++
Sbjct: 115 LEISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIM 174

Query: 61  T---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      R R P  L+L PTRELA QV   F +   N +       GG P   Q  
Sbjct: 175 DKVIQYNAKHGRGRNPLALVLAPTRELARQVEKEFCESAPNLDTLCV--YGGTPISRQMN 232

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G DV++ TPGRI+D   RG L ++ ++ +V+DEAD+ML +GF   ++ I   +P  
Sbjct: 233 SLDYGVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQN 292

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+++FSATM   ++K+++ +L+NP  I++   S           +  ++  +K +++  
Sbjct: 293 RQSMMFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGP 352

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+         I+F   K++   L +++ +      A+HG+I Q  R + LS F++G   
Sbjct: 353 LITEHAKGGKCIVFTQTKRDADRLAYAMARNFR-CEALHGDISQSQRERTLSGFRDGHFN 411

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIP+V  + ++++PN +E ++HR GRTGRAG+ G A  + A++  + +
Sbjct: 412 VLVATDVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTV 471

Query: 358 DAIEKLIEKKVDWLN 372
             IE+ I  K   L 
Sbjct: 472 RFIERDIGCKFSELP 486


>gi|225446899|ref|XP_002284103.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 666

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 125/375 (33%), Positives = 212/375 (56%), Gaps = 6/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++ + LG++ ++V A+ + G  K  PIQ   +   +Q  D+ G A+TGTGKT +F +P++
Sbjct: 115 LEISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIM 174

Query: 61  T---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      R R P  L+L PTRELA QV   F +   N +       GG P   Q  
Sbjct: 175 DKVIQYNAKHGRGRNPLALVLAPTRELARQVEKEFCESAPNLDTLCV--YGGTPISRQMN 232

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G DV++ TPGRI+D   RG L ++ ++ +V+DEAD+ML +GF   ++ I   +P  
Sbjct: 233 SLDYGVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQN 292

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+++FSATM   ++K+++ +L+NP  I++   S           +  ++  +K +++  
Sbjct: 293 RQSMMFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGP 352

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+         I+F   K++   L +++ +      A+HG+I Q  R + LS F++G   
Sbjct: 353 LITEHAKGGKCIVFTQTKRDADRLAYAMARNFR-CEALHGDISQSQRERTLSGFRDGHFN 411

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIP+V  + ++++PN +E ++HR GRTGRAG+ G A  + A++  + +
Sbjct: 412 VLVATDVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTV 471

Query: 358 DAIEKLIEKKVDWLN 372
             IE+ I  K   L 
Sbjct: 472 RFIERDIGCKFSELP 486


>gi|161723024|gb|ABX76969.1| Vasa [Parhyale hawaiensis]
          Length = 676

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 126/387 (32%), Positives = 196/387 (50%), Gaps = 16/387 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL   ++  +  AGY  PTPIQ   IP ++   D+ G AQTG+GKTA+F+LP+L 
Sbjct: 241 TFGASGLRDLLISNIERAGYKTPTPIQRVCIPTIMAGRDIMGCAQTGSGKTAAFLLPILH 300

Query: 62  -------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                        +    P  +++ PTRELA Q+ +   K+  +  +   +  GG    +
Sbjct: 301 GILASGGGNSGSMSSTAEPSAVVVAPTRELAIQIHNEARKFALDSIVRTVVCYGGASMNS 360

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++L+ G  VL+ TPGR+ D   RG++  ++++ LV+DEADRMLDMGFI  I+ I +  
Sbjct: 361 QYRQLQNGCAVLVATPGRLNDFVTRGRVSFSSVKYLVLDEADRMLDMGFIGDIEKIVNHQ 420

Query: 175 PFTRQTLL----FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                       FSAT  +E+Q ++ N LQN     V T  +    +    +    Q  +
Sbjct: 421 TMPAVGQRQTLLFSATFPEEIQTLACNHLQNYVFYAVGTVGAANTDVCQEVLNVPRQQKR 480

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  + +      +     +IF   K+    L   L  Q  +  +IHG+  Q  R + L+ 
Sbjct: 481 EVLMSKIEEFMANGDNKVLIFVETKRTADFLATLLSSQQLNSTSIHGDRFQSQREEALAQ 540

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+ +AARGLDI  V HV N+D+P   + Y+HRIGRTGR G  G A +   
Sbjct: 541 FKAGIRSILVATAVAARGLDIRGVSHVINYDLPKEVDEYVHRIGRTGRVGNKGHAVSFYD 600

Query: 351 KE-DIKHIDAIEKLI----EKKVDWLN 372
           +E D      + K++    ++  +WL 
Sbjct: 601 EEQDGALAKNLVKILTDASQEVPEWLK 627


>gi|327479736|gb|AEA83046.1| ATP-dependent RNA helicase RhlB [Pseudomonas stutzeri DSM 4166]
          Length = 476

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 131/374 (35%), Positives = 210/374 (56%), Gaps = 10/374 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++  +T 
Sbjct: 90  FHDFKLAPELMHAIHDLGFPYCTPIQAQVLGYTLKGRDAIGRAQTGTGKTAAFLISTITQ 149

Query: 63  ----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A++     K   L V   +GG+ F+ Q K+
Sbjct: 150 LLETPPPKERYMGEPRALIIAPTRELVVQIANDALDLTKYTGLNVMSFVGGMDFDKQLKQ 209

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 210 LESRYCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 269

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT TD++  +++ +  NP  +E+   +  ++T+E    A       K    
Sbjct: 270 SERQTLLFSATFTDDVMNLAQQWTTNPAVVEIEPENVASDTVEQHVYAVAGSDKYKLLYN 329

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                +Q+     ++F N+K  V  +   L K G S   + G++ Q  R++ L  F+EG 
Sbjct: 330 L---ITQNDWTRVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 386

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ +  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 387 IRVLVATDVAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGTSISFAGEDDAF 446

Query: 356 HIDAIEKLIEKKVD 369
            +  IE LI +K+ 
Sbjct: 447 ALPPIEALIGRKIQ 460


>gi|323526518|ref|YP_004228671.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323383520|gb|ADX55611.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
          Length = 536

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 141/390 (36%), Positives = 211/390 (54%), Gaps = 24/390 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLS  VV A+  AGY  PTP+Q + +P  +   D+   + TG+GKTA+F+LP + 
Sbjct: 48  TFASLGLSADVVSALTAAGYQNPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 107

Query: 62  ILEK---------------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN 100
              +                         V  P  L+L PTRELA QV      YGK+  
Sbjct: 108 RFAQLQKAQASQPREPRPADGGRGRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLK 167

Query: 101 L-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159
                 ++GG+ +  Q   L +  ++L+ TPGR++DH  RG++ M+ ++ILV+DEADRML
Sbjct: 168 RLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDMSQLQILVLDEADRML 227

Query: 160 DMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
           DMGFI  I  I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+         I  
Sbjct: 228 DMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRTNIAQ 287

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                  +  K    L   L     +   I+F   K +   L   L   GF   A+HG++
Sbjct: 288 TVHYVDDRDHKDR--LLDHLLRDAGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDL 345

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTGRA
Sbjct: 346 PQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRA 405

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           GR G A +LV   +   +  IE+ +   + 
Sbjct: 406 GRSGIAVSLVHHAEQGALKRIERFVRTPLP 435


>gi|162139465|ref|YP_001171714.2| ATP-dependent RNA helicase RhlB [Pseudomonas stutzeri A1501]
          Length = 476

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 131/374 (35%), Positives = 210/374 (56%), Gaps = 10/374 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++  +T 
Sbjct: 90  FHDFKLAPELMHAIHDLGFPYCTPIQAQVLGYTLKGRDAIGRAQTGTGKTAAFLISTITQ 149

Query: 63  ----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A++     K   L V   +GG+ F+ Q K+
Sbjct: 150 LLETPPPKERYMGEPRALIIAPTRELVVQIANDALDLTKYTGLNVMSFVGGMDFDKQLKQ 209

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 210 LESRYCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 269

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT TD++  +++ +  NP  +E+   +  ++T+E    A       K    
Sbjct: 270 SERQTLLFSATFTDDVMNLAQQWTTNPAVVEIEPENVASDTVEQHVYAVAGSDKYKLLYN 329

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                +Q+     ++F N+K  V  +   L K G S   + G++ Q  R++ L  F+EG 
Sbjct: 330 L---ITQNDWTRVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 386

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ +  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 387 IRVLVATDVAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGTSISFAGEDDAF 446

Query: 356 HIDAIEKLIEKKVD 369
            +  IE LI +K+ 
Sbjct: 447 ALPPIEALIGRKIQ 460


>gi|145569766|gb|ABP78872.1| ATP-dependent RNA helicase RhlB [Pseudomonas stutzeri A1501]
          Length = 526

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 131/374 (35%), Positives = 210/374 (56%), Gaps = 10/374 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++  +T 
Sbjct: 140 FHDFKLAPELMHAIHDLGFPYCTPIQAQVLGYTLKGRDAIGRAQTGTGKTAAFLISTITQ 199

Query: 63  ----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A++     K   L V   +GG+ F+ Q K+
Sbjct: 200 LLETPPPKERYMGEPRALIIAPTRELVVQIANDALDLTKYTGLNVMSFVGGMDFDKQLKQ 259

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 260 LESRYCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 319

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT TD++  +++ +  NP  +E+   +  ++T+E    A       K    
Sbjct: 320 SERQTLLFSATFTDDVMNLAQQWTTNPAVVEIEPENVASDTVEQHVYAVAGSDKYKLLYN 379

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                +Q+     ++F N+K  V  +   L K G S   + G++ Q  R++ L  F+EG 
Sbjct: 380 L---ITQNDWTRVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 436

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ +  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 437 IRVLVATDVAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGTSISFAGEDDAF 496

Query: 356 HIDAIEKLIEKKVD 369
            +  IE LI +K+ 
Sbjct: 497 ALPPIEALIGRKIQ 510


>gi|296104251|ref|YP_003614397.1| ATP-dependent RNA helicase SrmB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058710|gb|ADF63448.1| ATP-dependent RNA helicase SrmB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 442

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 138/428 (32%), Positives = 217/428 (50%), Gaps = 6/428 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ A+   G+ +PT IQ   IP  L+  DV G A TGTGKTA+++LP + 
Sbjct: 5   TFSELELDESLLNALESKGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPVLQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD+  +   N +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADHARELAANTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I++I     +  QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRNQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT   D ++  +E  L++P  +     +   + I   +        K      + L
Sbjct: 185 MLFSATLEGDAIKDFAERLLEDPVEVSATPSTRERKKIHQWYYRADNLEHKVEL--LKHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+     I+F  +++ V  L   L   G + C + G + Q  R + +    +G + ++
Sbjct: 243 LKQEEATRTIVFVRKRERVHELAEMLRNAGINNCYLEGEMAQIKRTEGIKRLTDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIPDV HV NFD+P   + Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLLQK 362

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           I + I++ +    ++G   +   P EK+       A       ++      R K      
Sbjct: 363 IGRYIDEPLKSRVVDGLRPTTRAPSEKMTGKPSKKALAKRAERKEKEKEKPRVKQRHRDT 422

Query: 418 SHIPLKES 425
            +I  +  
Sbjct: 423 KNIGKRRK 430


>gi|148235554|ref|NP_001080632.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19B [Xenopus laevis]
 gi|28436904|gb|AAH46696.1| Ddx19-prov protein [Xenopus laevis]
          Length = 487

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 183/382 (47%), Gaps = 15/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 102 SFEELRLKPELLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 161

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++      R P+ L L PT ELA Q     E+ G+  N+ +A  + G     +  K+
Sbjct: 162 LSRVDPAN---RYPQCLCLSPTYELALQTGKVIEQMGQFSNIKLAYAVRGK-KLERGHKI 217

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             R          ++ +    +   G       I  ++P   Q
Sbjct: 218 PEHIVIGTPGTVLDWCSKLRFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQKMLPRDCQ 277

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  + + + ++  +  P  I++     T +TI+  +V    +  K  AL    +
Sbjct: 278 MLLFSATFEESVWRFAQKVVPEPNIIKLKREEETLDTIKQYYVMCNNRDDKFRALC--NI 335

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 336 YGSITIAQAMIFCHTRKTASWLAGELYKEGHQVAMLSGEMMVEQRAAVIDRFREGKEKVL 395

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 396 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAINMVDSKH 455

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
           +++ +  I++   KK++ L+ D
Sbjct: 456 NMEILQRIQQHFSKKIEHLDAD 477


>gi|170696489|ref|ZP_02887614.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170138592|gb|EDT06795.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 537

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 140/391 (35%), Positives = 213/391 (54%), Gaps = 25/391 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLS  VV A+  AGY  PTP+Q + +P  +   D+   + TG+GKTA+F+LP + 
Sbjct: 51  SFASLGLSADVVSALTAAGYQNPTPVQQRAVPAAIAGRDLMVSSPTGSGKTAAFMLPAIE 110

Query: 62  ILEK----------------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNY 99
              +                          V  P  L+L PTRELA QV      YGK+ 
Sbjct: 111 RFSQLQKAQASQPREPRPADGARNTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHL 170

Query: 100 NL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158
                  ++GG+ +  Q   L +  ++L+ TPGR++DH  RG++ ++ ++ILV+DEADRM
Sbjct: 171 KRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRM 230

Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
           LDMGFI  I+ I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+         I 
Sbjct: 231 LDMGFIEDIETIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRLEQRTNIA 290

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
                   +  K    L   L   + +   I+F   K +   L   L   GF   A+HG+
Sbjct: 291 QTVHYVDDRDHKDR--LLDHLLRDEGLDQAIVFTATKMDADQLAGRLADAGFESAALHGD 348

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
           + Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTGR
Sbjct: 349 LPQGARNRTIKALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGR 408

Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           AGR G A +LV   +   +  IE+ +   + 
Sbjct: 409 AGRSGIAVSLVHHAEQGALKRIERFVRTPLP 439


>gi|104783494|ref|YP_609992.1| ATP-dependent RNA helicase RhlB [Pseudomonas entomophila L48]
 gi|95112481|emb|CAK17208.1| ATP-dependent RNA helicase RhlB [Pseudomonas entomophila L48]
          Length = 488

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 134/380 (35%), Positives = 212/380 (55%), Gaps = 11/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F D  LS +V+ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ +   
Sbjct: 101 FHDFKLSNEVMHAIHDLGFPYCTPIQAQVLGHTLRGQDAIGRAQTGTGKTAAFLISIISQ 160

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
              +       +  PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K 
Sbjct: 161 LQQVPPPKERYMGEPRALIIAPTRELVVQIAKDAMALTKYSGLNVMSFVGGMDFDKQLKS 220

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E+LV+DEADRMLDMGFIP ++ I    P  
Sbjct: 221 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVLVLDEADRMLDMGFIPQVRQIIRQTPPK 280

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT TD++  +++ +  NP  +E+   +  +ET+E    A       K    
Sbjct: 281 SERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYN 340

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                +Q+  +  ++F N+K  V  +   L + G +   + G++ Q  R++ L NF+EG 
Sbjct: 341 L---VTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLENFREGR 397

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 398 ISVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGSSGVSISFAGEDDSY 457

Query: 356 HIDAIEKLIEKKVD-WLNGD 374
            + AIE+L+ +K+   +  D
Sbjct: 458 QLPAIEELLGRKIKCEMPPD 477


>gi|251788689|ref|YP_003003410.1| ATP-dependent RNA helicase SrmB [Dickeya zeae Ech1591]
 gi|247537310|gb|ACT05931.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
          Length = 450

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 133/369 (36%), Positives = 202/369 (54%), Gaps = 4/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++  L   ++ A+ D G+ +PT IQ + IP  ++  DV G A TGTGKTA+++LP + 
Sbjct: 5   NFSEFDLDDSLLDALRDMGFSRPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD       + +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARAMAAHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT
Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT   D +Q  +E  L +P  IE        + I   +        K    L   L
Sbjct: 185 MLFSATLEGDAIQDFAERLLNDPITIEAEPSRRERKKILQWYYRADDIQHKTA--LLSHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  +   I+F  +++ V  L   L   G   C + G + Q  R + +    EG ++++
Sbjct: 243 LKQPDVTRSIVFVRKRERVHELVDWLRSAGIESCYLEGEMVQAKRNEAIKRLSEGRVKVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI DV HVFNFD+P  ++ Y+HRIGRTGRAGR G A +LV   D   ++ 
Sbjct: 303 VATDVAARGLDIQDVSHVFNFDLPRTSDVYLHRIGRTGRAGRKGCAISLVEAHDYLLLEK 362

Query: 360 IEKLIEKKV 368
           + + + + +
Sbjct: 363 VGRYLNEPL 371


>gi|120556818|gb|ABM26902.1| SrmB [Serratia marcescens]
          Length = 439

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 142/443 (32%), Positives = 230/443 (51%), Gaps = 10/443 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP + 
Sbjct: 5   TFSELELDDRLIDALRDKGYDRPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPVLQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +   + +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ T GR+L +          +E L++DEADRMLDMGF   I+ I++   +  QT
Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRNQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT   + +++ +E  L+ P  +E +      + I   +        K        L
Sbjct: 185 LLFSATLEGEAIREFAERILKEPVEVEADPSRRERKKILQWYYRADDVQHKTAL--LIHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  ++  +IF  +++ V  L   L + G + C + G + Q  R + +    +G + ++
Sbjct: 243 LKQPDVQKSVIFVRKRERVHELATWLREAGINTCYLEGEMVQAKRNEAVKRMMDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDVAARGLDILDITHVFNFDMPRTADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGK 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           + + +    + L   +     P  K+   + N       + +++    R K+    +  H
Sbjct: 363 VGRYLN---EPLKARVIDELRPKTKVPNEKSNGKPSKKVLAKRAEDKARNKEKAKVKVRH 419

Query: 420 IPLKESEKISKLQQDIQENDADS 442
              ++++ + K +Q   +   D+
Sbjct: 420 ---RDAKNVGKRRQAKAKPAGDA 439


>gi|119962035|ref|YP_948481.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
 gi|119948894|gb|ABM07805.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
          Length = 566

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 134/418 (32%), Positives = 215/418 (51%), Gaps = 19/418 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  +   +V ++ DAG   P PIQ  T+P+ L  HD+ G A+TGTGKT  F +P L 
Sbjct: 38  SFADFNVRADIVESLADAGITHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGIPALQ 97

Query: 62  ILEKGRARVRM-------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L++ PTRELA QVA++ +   +  N  +A + GG  +E 
Sbjct: 98  RVAGRDDAGYAKLAVPGAPQALVIVPTRELAVQVANDLQAASRKRNARIATIYGGRAYEP 157

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L++G ++++ TPGR++D + +  L + N++++++DEAD MLD+GF+P ++ + +  
Sbjct: 158 QIDALQKGVEIVVGTPGRLIDLYKQKHLSLKNVKMVILDEADEMLDLGFLPDVETLIAGT 217

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQTLLFSATM   +  ++  ++  P  I    P+    T        Y  +S     
Sbjct: 218 PAVRQTLLFSATMPGPVIAMARRYMTQPTHIRAADPNDEGLTKRDIRQLIYRAHSMDKTE 277

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +         IIF   K+    +   L  +GF+  AIHG++ Q +R + L  F+  
Sbjct: 278 VVARILQARGRGRTIIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRNN 337

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+      + Y+HR+GRTGRAG  G A T V  +D+
Sbjct: 338 KVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWDDM 397

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
                I K +   V            P+E    + H +   +  IP+ + G   R K 
Sbjct: 398 PRWGLINKALGLSVPE----------PVETYSSSPHLYT--DLDIPEGTKGRLPRNKR 443


>gi|50084496|ref|YP_046006.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. ADP1]
 gi|49530472|emb|CAG68184.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter sp. ADP1]
          Length = 383

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 128/372 (34%), Positives = 198/372 (53%), Gaps = 6/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++  A+   G+ + TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 5   FGTLNLHPQLKQAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 63  LEKGRARVRMPRTL----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L     + +  R      IL PTRELA Q+  +  +  +  +L V  L+GG+ F+ Q K 
Sbjct: 65  LLNNPIQEQRYRGEVRALILAPTRELALQIESDARELTRFTDLNVLTLVGGVDFDKQKKP 124

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             E+  D+L+ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P  
Sbjct: 125 LNEKFIDILVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPRK 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q      + T     V     Q              +T        Y    +    L Q
Sbjct: 185 EQRQTLMFSAT-FSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYMVAKQDKYRLLQ 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   + +   +IF N++  V  L   L+K G+ V  + G I Q  R+K+L  FK+G   
Sbjct: 244 DILRDEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKNN 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +M+A+D+A RG+ +  V HV NF +P ++++Y+HRIGRTGRAG  G + + ++++D  ++
Sbjct: 304 IMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGTQGVSISFLSEDDAFYL 363

Query: 358 DAIEKLIEKKVD 369
             IEK I KK+ 
Sbjct: 364 PEIEKAIGKKLP 375


>gi|312375100|gb|EFR22532.1| hypothetical protein AND_15065 [Anopheles darlingi]
          Length = 821

 Score =  145 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 134/436 (30%), Positives = 220/436 (50%), Gaps = 40/436 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + G   +++  +   GY  PTPIQ + IP+ LQ  D+ GIA+TG+GKT +F++P+LT
Sbjct: 394 NWIESGFPKEILEIIDKVGYKDPTPIQRQAIPIGLQNRDIIGIAETGSGKTLAFLIPLLT 453

Query: 62  ILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            ++      +     + P  +IL PTRELA Q+ +  +K+G    +   +++GG+  E Q
Sbjct: 454 WIQSLPKIERQETADQGPYAIILAPTRELAQQIEEETQKFGTPLGIRTVVVVGGLSREEQ 513

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 514 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVMDEADRMIDMGFEPDVQKILEYMP 573

Query: 176 -------------------------FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
                                      RQT++F+ATM   +++++  +L+ P  + + + 
Sbjct: 574 VTNLKPDTEEAEDASKLMENFNTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSI 633

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               E  E           +K  +       +      IIF NQKK    L   LEK G+
Sbjct: 634 GKPTERTEQIIHIMGENDKRKKLMEILSRGVEPPC---IIFVNQKKGADVLAKGLEKLGY 690

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           + C +HG   Q  R   L++ K G+  ++VA+D+A RG+DI DV  V N+D+    E+Y 
Sbjct: 691 NACTLHGGKGQEQREYALASLKNGSKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYT 750

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A +   K+D      +++++      ++  +S   P L     AQH
Sbjct: 751 HRIGRTGRAGKTGCAISFCTKDDSHLFYDLKQML------MSSPVSVCPPELMNHPDAQH 804

Query: 391 NHARKNNPIPQKSTGF 406
                     ++   F
Sbjct: 805 KPGTVVTKKRREEKIF 820


>gi|167576699|ref|ZP_02369573.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis TXDOH]
          Length = 465

 Score =  145 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 148/405 (36%), Positives = 213/405 (52%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 10  FSALPLTPATLANLAQLGYTVMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + L+L PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 70  LDA---RRFDVQALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  L P TRQTL
Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ F     R                    Y     +      LL  
Sbjct: 187 LFSATYPDGIAKLSQQF----LRNPKEVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLK 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 243 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 362

Query: 362 KLIEKKVDWLN-GDLSS-----LNPPLEKIDIAQHNHARKNNPIP 400
           + + + V+W    +L +     L PP+E + I      RK+   P
Sbjct: 363 QALGRDVEWHPLAELKADGNEPLLPPMETLQIL---GGRKDKIRP 404


>gi|74205930|dbj|BAE23239.1| unnamed protein product [Mus musculus]
          Length = 427

 Score =  145 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 165/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY  +  ++V      I  +    K    
Sbjct: 106 IEPVNGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    +R   L N    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 166 HVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     +K+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQYKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRFEVNVAELPEEID 418


>gi|189235329|ref|XP_975300.2| PREDICTED: similar to DEAD box ATP-dependent RNA helicase
           [Tribolium castaneum]
          Length = 553

 Score =  145 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 94/406 (23%), Positives = 180/406 (44%), Gaps = 7/406 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL + P ++  V   GY++PTP+Q + +P++L+  ++   A TG+GKTA+F++P+L 
Sbjct: 116 TFDDLNVDPIIINNVKKCGYIEPTPVQKQAVPIMLEGRNLLACAPTGSGKTAAFLIPILH 175

Query: 62  ILEKGRAR-----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            L+  R       V  P   + + T+    ++++    +    +     LI   P  +Q 
Sbjct: 176 DLKGPRKEGFRALVLCPTRELAKQTQRECIRLSEGKGFHVHVISKINKALIQYGPNSSQK 235

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             +       +C   +          +   +        +           Q + +    
Sbjct: 236 FDILITTPNRVCFLLKQDQAALSLANIKWLVIDEADKLFETGNRGFREQLDQILNACTNK 295

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            ++  +FSAT T  + K   + ++   RI V   ++ A+T++   +    +  K  A   
Sbjct: 296 EKKVAMFSATYTPMVAKWCVHNMKGLVRITVGQRNAAADTVDQELLFVGNEQGKLLAF-- 353

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + L  +      ++F   K     L + L   G +V AIH +  Q  R   + +F+EG I
Sbjct: 354 RDLVKKGLTPPVLVFVQSKDRAQQLFNELIYDGINVDAIHADRTQLQRDNTVRSFREGRI 413

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++ ++L ARG+D   V  V N+D P  A +Y+HR+GR GRAGR GKA T    E+  +
Sbjct: 414 WVLICTELMARGIDFKGVNLVINYDFPPSAISYVHRVGRAGRAGRTGKAITFFTVENTVN 473

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           + +I  ++++    +   + ++    +K        A K + I  +
Sbjct: 474 LRSIAYVLKESGCEVPSYMLTMKKTSKKDRKKLEKAAPKRDDIDTR 519


>gi|302879765|ref|YP_003848329.1| DEAD/DEAH box helicase domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302582554|gb|ADL56565.1| DEAD/DEAH box helicase domain protein [Gallionella
           capsiferriformans ES-2]
          Length = 484

 Score =  145 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 134/406 (33%), Positives = 214/406 (52%), Gaps = 17/406 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LSP ++  +   GY+  TPIQ +++P+ L  +D+   A+TG+GKTA+F LP+LT
Sbjct: 30  TFNELPLSPGLLSTLQQLGYLTMTPIQAESLPITLAGNDLIAQAKTGSGKTAAFALPLLT 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKLE 120
            L     R    + ++L PTRELA QV     +  ++ +    L + G      Q   LE
Sbjct: 90  RL---NPRRFAIQAMVLCPTRELADQVTQEIRRLARSEDNIKILTLCGGSTMRPQIASLE 146

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRI+DH +R  L ++ +  LV+DEADRMLDMGF   +  +    P  RQT
Sbjct: 147 HGAHIVVGTPGRIMDHLDRNTLELSALNTLVLDEADRMLDMGFYDSLAYVVKHCPKDRQT 206

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT  D + +++  F++ P+++++      ++  +  +  +  +       L +   
Sbjct: 207 LMFSATYPDGVMRLARQFMRQPQQVKLEEQHEESKIRQRFYEVSNEERLAAVGTLLR--- 263

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + + FCN K+   +L   L  QG     ++G+++QR R ++L  F   +  ++V
Sbjct: 264 -HYRPVSTLAFCNTKQQCRSLLEVLHAQGIVALTLNGDMEQRDRDQVLIQFANRSCSVLV 322

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N DV    E ++HRIGRTGRAG  G A +LV   +   + +I
Sbjct: 323 ATDVAARGLDITQLEAVINVDVTPDPEVHVHRIGRTGRAGEDGWALSLVGPTERHRVISI 382

Query: 361 EKLIEKKVDWLNG------DLSSLNPPLEKIDIAQHNHARKNNPIP 400
            KL     +W         D + L PP+  + I      RK    P
Sbjct: 383 AKLSGNVPEWHEIAELKDEDEAPLVPPMVTLQIL---GGRKEKIRP 425


>gi|55926219|ref|NP_446015.2| ATP-dependent RNA helicase DDX39A [Rattus norvegicus]
 gi|61212312|sp|Q5U216|DX39A_RAT RecName: Full=ATP-dependent RNA helicase DDX39A; AltName: Full=DEAD
           box protein 39; AltName: Full=Nuclear RNA helicase, DECD
           variant of DEAD box family
 gi|55562871|gb|AAH86328.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Rattus norvegicus]
 gi|149037897|gb|EDL92257.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, isoform CRA_a [Rattus
           norvegicus]
          Length = 427

 Score =  145 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 165/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY  +  ++V      I  +    K    
Sbjct: 106 IEPINGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    +R   L N    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 166 HVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRFEVNVAELPEEID 418


>gi|242242830|ref|ZP_04797275.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144]
 gi|242233731|gb|EES36043.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144]
          Length = 448

 Score =  145 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 124/437 (28%), Positives = 205/437 (46%), Gaps = 15/437 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV +  + KPT IQ + IP +L+  ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEHFNLDENLIEAVKNLNFEKPTEIQNRIIPRILKGTNLIGQSQTGTGKSHAFLLPLIQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNKKLER 121
           +E     ++ P+ +++ PTRELA Q+        K        L IGG   E   ++   
Sbjct: 66  IES---DIQEPQAIVVAPTRELAQQLYQVAMHLVKFKKGINVKLFIGGTDLEKDKQRCNH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D  + G L  +    L+IDEAD M+D+G I  + +I + +      L
Sbjct: 123 QPQLIIGTPTRINDLAHSGYLHAHLASYLIIDEADLMIDLGLIEDVDHIAARLDNENAHL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
              +    +  +   N   +     V    +  +     ++      +K    L+ +   
Sbjct: 183 AVFSATIPKSLQPFLNKYLSQPEFVVVDGKAHNKENIEFYLIPTKGSAKVDKTLELIDIL 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   IIFCN ++N   L  +L K+G  +  IHG +  R R + +   +    Q ++A
Sbjct: 243 NPYLC--IIFCNSRENADELADTLNKEGIKIGMIHGGLTPRERKQQMKRIRNLDFQFVIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL   ++  +I  IE
Sbjct: 301 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYGPDEESNITLIE 360

Query: 362 K--LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN---NPIPQKSTGFDRRKKNYSSQ 416
                 K VD  NG+L     P++  ++ +    + +   N +  K     +RK     +
Sbjct: 361 DKGYKFKNVDIKNGEL----KPIKAHNMRKSRQRKDDHLTNEVKHKVRSKSKRKVKPGYK 416

Query: 417 KSHIPLKESEKISKLQQ 433
           K      E  K  + +Q
Sbjct: 417 KKFKQEVEKLKRQERKQ 433


>gi|3132829|gb|AAC16391.1| nuclear RNA helicase [Rattus norvegicus]
          Length = 427

 Score =  145 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 164/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             +   + F KY  +  ++V      I  +    K    
Sbjct: 106 IEPINGQVSVLVMCHTRELAFQISTEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    +R   L N    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 166 HVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRFEVNVAELPEEID 418


>gi|222151455|ref|YP_002560611.1| ATP-dependent RNA helicase homolog [Macrococcus caseolyticus
           JCSC5402]
 gi|222120580|dbj|BAH17915.1| ATP-dependent RNA helicase homolog [Macrococcus caseolyticus
           JCSC5402]
          Length = 443

 Score =  145 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 132/446 (29%), Positives = 215/446 (48%), Gaps = 10/446 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L+P ++ AV D  + +PT IQ + IP + +   + G +QTGTGK+ +F+LP++  
Sbjct: 7   FEHFELAPYLIEAVKDLNFNQPTEIQRRVIPKLKKETHLIGQSQTGTGKSHAFLLPLINK 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++K    +  P+ +IL PTRELA Q+ D  E        +   L IGG       +K + 
Sbjct: 67  IDK---DLIQPQMIILAPTRELAKQLYDASEHLISFTEGIKAGLYIGGTDKNKDIQKSKV 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D      L ++    +V+DEAD M+D+GF+P +  I + V    Q  
Sbjct: 124 QPQIVIGTPNRIKDLAEENVLHIHLANAVVVDEADLMIDLGFLPTVDKIAANVSRDAQIA 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+   L      +L  P+ IE+   S T + I    V T +   K+       + +
Sbjct: 184 VFSATIPKALHPFLNKYLSKPEFIEIEPDSKTNKNITFYLVPTKSNDKKEK---LVSVMN 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIF N +     L   L+ QG  V  +HG +  R R++++   K    Q ++A
Sbjct: 241 TCNPYLAIIFANSRDRADELAEFLQDQGLKVGIMHGGLAPRERIQMMKRVKNLEFQYIIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HVFN+D+P   + + HR+GRTGR    G A TL   ++   I+ IE
Sbjct: 301 SDLASRGIDIEGVSHVFNYDIPKDIDFFTHRVGRTGRGNYTGVAITLYTPDEEDLINQIE 360

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           K   K   +++ D+ +      K    + +  +K + I +      ++KK          
Sbjct: 361 K---KGFSFIHSDIKNGELTEIKDRTERRSRQKKEDNIEKSLVHKVKKKKKVKPGYKKKF 417

Query: 422 LKESEKISKLQQDIQENDADSLGFRG 447
             E +KI + ++       +    +G
Sbjct: 418 RYELDKIKRNEKKAHSKRVNKQNRKG 443


>gi|283457687|ref|YP_003362273.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133688|dbj|BAI64453.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 574

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 141/410 (34%), Positives = 210/410 (51%), Gaps = 17/410 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD G+   +  A+   G   P PIQ  T+P+ L   D+ G A+TGTGKT  F LP + 
Sbjct: 15  SFADFGVRQDISDALAAVGITSPFPIQELTLPVALSGQDIIGQAKTGTGKTLGFGLPTIQ 74

Query: 62  ILEKGRARVRM-------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ LIL PTRELA QV ++     K  N  VA L GG+P E 
Sbjct: 75  RVVGRDDEGWADLEYPGAPQALILVPTRELAIQVGEDLAIAAKLRNARVATLYGGVPIEP 134

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L RG +V++ TPGRI+D + +G L +  ++I+V+DEAD MLD+GF P ++ I S +
Sbjct: 135 QAELLRRGLEVVVGTPGRIIDLYQQGFLNLKQVKIVVLDEADEMLDLGFQPSVEKILSYL 194

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ++LFSATM   +  ++  ++  P RI    P   ++T        Y  +      
Sbjct: 195 PEDRQSMLFSATMPGPVIAMARQYMTKPMRISAADPEDASKTKASIRQVVYRAHHLDKDE 254

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +         +IF   K++   +   L  +GF+   +HG+++Q +R + L  F+ G
Sbjct: 255 MIGRILRATGRGRTVIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRTG 314

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N  VP   + Y+HR GRTGRAG  G A TLV  +D+
Sbjct: 315 KVDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNEGTAVTLVDWDDL 374

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
                I   +E  V            P+E    ++H     N P   K  
Sbjct: 375 PRWKVINDALELGVPE----------PVETYSSSEHLFYDLNIPAGTKGR 414


>gi|256074313|ref|XP_002573470.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238658650|emb|CAZ29702.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 875

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 130/379 (34%), Positives = 202/379 (53%), Gaps = 8/379 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++ G    ++  +  + +  PTPIQ +  P+ L   D+ GIAQTG+GKTASF+LP + 
Sbjct: 78  KFSEAGFPSYIMSVIKKSKWDSPTPIQCQGWPVALSGRDLVGIAQTGSGKTASFLLPAIV 137

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +      R   P  LIL PTRELA QV    E +  +     A L GG     Q + L
Sbjct: 138 HAKAQPSLKRGDGPIVLILVPTRELAQQVEKVAEDFCYSAGFKSACLYGGASRTGQAEAL 197

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +  +V+I TPGR+LD        M     LV+DEADRMLDMGF P I+ + S V   RQ
Sbjct: 198 GQSPEVVIATPGRLLDFLESRHTNMRRCTYLVLDEADRMLDMGFEPSIRRVVSQVRPDRQ 257

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E++ ++E+FL +  +I V +   +A       V    +  K        L
Sbjct: 258 TLMWSATWPREVKALAEDFLYDYIQINVGSTKLSANHNIRQHVEILNESEK--FKRLLSL 315

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       ++F   KK    LC  L+ +GF   A+HG+  Q+ R + L +       ++
Sbjct: 316 LNSFDNARVLVFTETKKRTDELCQKLQDKGFDATAMHGDKHQKERDRALDSHIS----VL 371

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI DV ++ N+D P++ E+YIHRIGRTGR+ + G A+T  + +  +    
Sbjct: 372 VATDVASRGLDINDVRYIINYDYPSQTEDYIHRIGRTGRSDKKGTAYTFFSAKQPRLARE 431

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + +++++    +  +L  +
Sbjct: 432 LIEVLKEARQTIPDELFKI 450


>gi|323509361|dbj|BAJ77573.1| cgd3_2330 [Cryptosporidium parvum]
          Length = 557

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 132/373 (35%), Positives = 202/373 (54%), Gaps = 1/373 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   G SPK++ ++   GY  PTPIQ K  P +L   DV  +A+TG+GKTA FVLPM+ 
Sbjct: 5   TFQCFGFSPKLLESIKIIGYSLPTPIQRKCFPSILAGRDVVAMARTGSGKTAGFVLPMIE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L    +++   R +IL PTRELA Q      K     NL V  L GG   + Q + L  
Sbjct: 65  RLGCSHSQIVGIRGVILSPTRELALQTYRVVRKLACKTNLVVCALTGGSSLDRQFESLSG 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+  H     L +  ++I+V+DEADR+ +MG    I+ I   +P  RQ +
Sbjct: 125 NPDIVVATPGRLFHHIIEAGLSLIAVKIIVLDEADRLFEMGLASQIEKILESIPKNRQCV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM   L   S+  L  P+ I++++    +ET+         +  K  +LL  L  +
Sbjct: 185 LVSATMPTALASFSKVMLNEPEVIQIDSDYILSETL-KLTFLFVREDEKLASLLYLLRNT 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  IIFC  K +V  +   LE     V  I+GN+DQ +R   L+ F++   + ++ 
Sbjct: 244 IPSHERAIIFCATKHHVDYIVKILESNNIIVSYIYGNMDQEARTMHLNTFRKNKSRALIV 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP + +V NFD P   + ++HR GRT RAG+HG+AF+L+   D+ +   + 
Sbjct: 304 TDIAARGVDIPMIKYVINFDFPLSPKLFVHRTGRTARAGQHGRAFSLITSRDLPYTIDLC 363

Query: 362 KLIEKKVDWLNGD 374
             +  K+  L   
Sbjct: 364 LFLGLKMTTLTSK 376


>gi|168065191|ref|XP_001784538.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663919|gb|EDQ50659.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 748

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 143/464 (30%), Positives = 245/464 (52%), Gaps = 19/464 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  V  AV   GY  PTPIQ KT+PL+L  +DV  +A+TG+GKTA+F++PM+  
Sbjct: 9   FETLGLSLPVFRAVKRKGYRIPTPIQRKTLPLILAGYDVVAMARTGSGKTAAFLIPMIEK 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +        R +IL P+RELA Q     ++  K  +L +A+L+GG   EAQ ++L   
Sbjct: 69  LVEHSNNAGA-RAVILSPSRELALQTFKFCKELSKYTDLKIAILVGGDSMEAQFEQLAGN 127

Query: 123 ADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR++ H      + +  +E +V DEADR+ +MGF   ++ I S +  +RQ L
Sbjct: 128 PDVIIATPGRLMHHLSEVEGMSLRTVEYIVFDEADRLFEMGFAEQLRQIMSHLGESRQVL 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L   ++  L++P  + ++  S  +  ++  F  T     K  AL+  + + 
Sbjct: 188 LFSATLPRLLADFAKAGLRDPHLVRLDVESRISPDLQLSF-FTVRHDEKPAALVHLVREV 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  I+F   K +V  L   L+ +G  +  ++G++DQ +R   ++ F+ G  +L++ 
Sbjct: 247 IPAEQQTIVFVATKHHVEFLYELLKTEGIDISVVYGSMDQAARKIHIAKFRAGKTKLLLV 306

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP + +V N+D P + + ++HR+GR  RAGR G +++ V  E++ ++  + 
Sbjct: 307 TDVAARGIDIPLLDNVINYDFPPKPKLFVHRVGRAARAGRTGTSYSFVTSEEMPYVLDLH 366

Query: 362 KLIEKKVDWLNGD---LSSLNPPLEKIDIAQHNHARKNNPIPQK--STGFDRRKKNYSSQ 416
             + K +     +   ++     +  ++ A          +PQ     G DR ++  S+ 
Sbjct: 367 LYLSKGIRPAPLEEAIVADREKVMADLEAASKRGETIFGRMPQSVLDFGMDRLREVISNN 426

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
              I L+++ K           +A  L  +   PA +    R K
Sbjct: 427 DDLIGLQKAAK-----------NAYKLYVKTRPPAALESAKRAK 459


>gi|126644777|ref|XP_001388110.1| hypothetical protein [Cryptosporidium parvum Iowa II]
 gi|126117338|gb|EAZ51438.1| hypothetical protein cgd3_2330 [Cryptosporidium parvum Iowa II]
          Length = 862

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 132/373 (35%), Positives = 202/373 (54%), Gaps = 1/373 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   G SPK++ ++   GY  PTPIQ K  P +L   DV  +A+TG+GKTA FVLPM+ 
Sbjct: 5   TFQCFGFSPKLLESIKIIGYSLPTPIQRKCFPSILAGRDVVAMARTGSGKTAGFVLPMIE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L    +++   R +IL PTRELA Q      K     NL V  L GG   + Q + L  
Sbjct: 65  RLGCSHSQIVGIRGVILSPTRELALQTYRVVRKLACKTNLVVCALTGGSSLDRQFESLSG 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR+  H     L +  ++I+V+DEADR+ +MG    I+ I   +P  RQ +
Sbjct: 125 NPDIVVATPGRLFHHIIEAGLSLIAVKIIVLDEADRLFEMGLASQIEKILESIPKNRQCV 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM   L   S+  L  P+ I++++    +ET+         +  K  +LL  L  +
Sbjct: 185 LVSATMPTALASFSKVMLNEPEVIQIDSDYILSETL-KLTFLFVREDEKLASLLYLLRNT 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  IIFC  K +V  +   LE     V  I+GN+DQ +R   L+ F++   + ++ 
Sbjct: 244 IPSHERAIIFCATKHHVDYIVKILESNNIIVSYIYGNMDQEARTMHLNTFRKNKSRALIV 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP + +V NFD P   + ++HR GRT RAG+HG+AF+L+   D+ +   + 
Sbjct: 304 TDIAARGVDIPMIKYVINFDFPLSPKLFVHRTGRTARAGQHGRAFSLITSRDLPYTIDLC 363

Query: 362 KLIEKKVDWLNGD 374
             +  K+  L   
Sbjct: 364 LFLGLKMTTLTSK 376


>gi|330796382|ref|XP_003286246.1| hypothetical protein DICPUDRAFT_54136 [Dictyostelium purpureum]
 gi|325083751|gb|EGC37195.1| hypothetical protein DICPUDRAFT_54136 [Dictyostelium purpureum]
          Length = 630

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 123/400 (30%), Positives = 208/400 (52%), Gaps = 28/400 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  L  +V+ AV   GY KP+PIQ+++IP+ +   D+ GIA+TG+GKT +FV+PM  
Sbjct: 211 SWQESSLPRQVLDAVRHLGYEKPSPIQMQSIPVSVSGRDILGIAETGSGKTCAFVIPMCI 270

Query: 62  ILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + K            P  +++ PTREL  Q+      + + Y   V  L+GG P E Q 
Sbjct: 271 YISKQPRLTKETEAEGPYAVVMAPTRELVQQIEKETRNFAQFYGFRVVSLVGGQPIEEQA 330

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY---------- 166
            +L +G ++++ TPGR+ D   +  L++N    +V+DEAD M+++GF             
Sbjct: 331 YQLGKGCEIVVATPGRLNDCLQKRYLVLNQCNYIVLDEADMMINLGFESQVTSVLDAMPS 390

Query: 167 -----------IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
                       +  T      R T+LFSATM  +++++++ +L+ P  I +       +
Sbjct: 391 TNLKSENEELAERQETDRERVYRTTILFSATMPPQVEQIAKKYLRRPCTITIGEAGKVVD 450

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
            I    +   ++  KK  L+Q +          IIF N+KK+  N+   LE+ G S   +
Sbjct: 451 RIRQTVIFVKSENDKKEHLVQLIKDGPPPPI--IIFVNKKKHCENIGAVLEECGVSYTIL 508

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG   Q  R   L NFK+    +++A+ +A+RG+ +  V HV NFD+PN  E+Y HRIGR
Sbjct: 509 HGGRSQEQREAALDNFKKKNSDVLIATGVASRGIHVDGVTHVINFDIPNNIEDYTHRIGR 568

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDL 375
           TGRAG  G A + ++ +D + +  ++ ++    + +  +L
Sbjct: 569 TGRAGSSGLATSFISDKDTEIMYDLKNILTATNNIVPIEL 608


>gi|296808427|ref|XP_002844552.1| ATP-dependent RNA helicase drs1 [Arthroderma otae CBS 113480]
 gi|238844035|gb|EEQ33697.1| ATP-dependent RNA helicase drs1 [Arthroderma otae CBS 113480]
          Length = 807

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 134/359 (37%), Positives = 194/359 (54%), Gaps = 1/359 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKTA+F++P+L 
Sbjct: 294 SFQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTAAFIVPILE 353

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++
Sbjct: 354 RLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKK 413

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EIL++DEADRML+ GF   +  I + +P +RQT
Sbjct: 414 RPDVIIATPGRFIDHMRNSASFTVDTLEILILDEADRMLEDGFAEELNEILTTIPKSRQT 473

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT  + K+    L  P R+ V++   T  T+   FV        K       L 
Sbjct: 474 MLFSATMTSSVDKLIRVGLNKPIRLMVDSKKQTVGTLVQEFVRLRPGREDKRLAYLMFLC 533

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F  QKK    +       G     +HG++ Q  R+K + +F++G +  ++
Sbjct: 534 KTVYTSRVIVFFRQKKEAHRVRIVFGLMGLKAAELHGSMSQEQRIKSVEDFRDGKVSYLL 593

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K +  
Sbjct: 594 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKE 652


>gi|118469425|ref|YP_886296.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155]
 gi|118170712|gb|ABK71608.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155]
          Length = 502

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 151/425 (35%), Positives = 226/425 (53%), Gaps = 9/425 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+  ++V A+ + G   P  IQ  T+PL L   D+ G A+TG GKT +F +P+L 
Sbjct: 7   SFAELGVRDEIVRALAENGIEHPFAIQELTLPLALAGDDLIGQARTGMGKTYAFGVPLLH 66

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKN------YNLTVALLIGGIPFE 113
            +     R     PR L++ PTREL  QV ++     K+         TV  + GG P+E
Sbjct: 67  RVSSDENRPLTGAPRALVVVPTRELCLQVYNDLAGAAKHLPTNDGRKFTVTSIYGGRPYE 126

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L +G DV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+ I  L
Sbjct: 127 PQIEALRKGVDVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILQL 186

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
            P +RQ +LFSATM D +  ++  F+  P  I    P S A        A  A    K  
Sbjct: 187 TPDSRQAMLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTAQYAYRAHALDKVE 246

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L+ ++LQ++      ++F   K+    +   L ++GF V A+HG++ Q +R K L +F+ 
Sbjct: 247 LVSRILQARGRG-ATMVFTRTKRTAQKVSDELAERGFKVGAVHGDLGQGAREKALKSFRT 305

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAG+ G A TLV  ++
Sbjct: 306 GEIDVLVATDVAARGIDIDDVTHVINYQCPEDEQAYVHRIGRTGRAGKTGVAITLVDWDE 365

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           +   + I+K +           SS     E +DI          P  + +   D  +   
Sbjct: 366 LARWEMIDKALNLGNPDPAETYSSSPHLYEDLDIPTDATGTVGKPAKRATKASDEDEHRI 425

Query: 414 SSQKS 418
           SS   
Sbjct: 426 SSADR 430


>gi|67522985|ref|XP_659553.1| hypothetical protein AN1949.2 [Aspergillus nidulans FGSC A4]
 gi|74657502|sp|Q5BBY1|HAS1_EMENI RecName: Full=ATP-dependent RNA helicase has1
 gi|40745958|gb|EAA65114.1| hypothetical protein AN1949.2 [Aspergillus nidulans FGSC A4]
 gi|259487308|tpe|CBF85879.1| TPA: ATP-dependent RNA helicase has1 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5BBY1] [Aspergillus
           nidulans FGSC A4]
          Length = 609

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 120/411 (29%), Positives = 202/411 (49%), Gaps = 13/411 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS K +  + + G+   T IQ +TIP +L   DV G A+TG+GKT +F++P + 
Sbjct: 129 KFTELGLSEKTLQGIKEMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 188

Query: 62  ILEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + R    +I+  PTRELA Q+     +    ++ T  ++IGG    A+ +KL 
Sbjct: 189 MLSALRFKPRNGTGVIVVSPTRELALQIFGVARELLTAHSQTYGIVIGGANRRAEAEKLT 248

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G ++LI TPGR +    N    +  N++ LVIDEADR+L++GF   ++ I  ++P   +
Sbjct: 249 KGVNLLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIIKILPNEDR 308

Query: 180 TLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             + FSAT T +++ ++   L+               T+E          + K  LL   
Sbjct: 309 QTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFLLLFS 368

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +    V      L      V  +HG   Q+ R      F      +
Sbjct: 369 FLKRNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGV 428

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R A   G++   +   ++  +
Sbjct: 429 LICTDVAARGLDIPAVDWIIQFDPPDDTRDYIHRVGRTARGANGRGRSLMFLQPSEVGFL 488

Query: 358 DAIEKLIEKKVDWLNGDLS-----SLNPPLEKIDIAQHNHARKNNPIPQKS 403
             ++   E +V  +  D       ++   LEK+ I+Q+ +  K+     +S
Sbjct: 489 KYLK---EARVPVVEFDFPAKKIVNVQSQLEKL-ISQNYYLNKSAKDGYRS 535


>gi|226943260|ref|YP_002798333.1| ATP-dependent RNA helicase RhlB [Azotobacter vinelandii DJ]
 gi|226718187|gb|ACO77358.1| ATP-dependent RNA helicase RhlB [Azotobacter vinelandii DJ]
          Length = 521

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 126/374 (33%), Positives = 212/374 (56%), Gaps = 10/374 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D  L P+++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 135 FHDFDLDPRLMHAIHDVGFPYCTPIQAQVLGYTLKGRDAIGRAQTGTGKTAAFLISIISQ 194

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     +   L V   +GG+ F+ Q K+
Sbjct: 195 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDALALTRYTGLNVMSFVGGMDFDKQLKQ 254

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             E+  D+L+ TPGR+LD   RG++ ++ +E+LV+DEADRMLDMGFIP ++ I    P+ 
Sbjct: 255 LEEKFCDILVATPGRLLDFNQRGEVHLDMVEVLVLDEADRMLDMGFIPQVRQIIRQTPYK 314

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT T+++  +++ +  +P  +E+      ++++E    A       +    
Sbjct: 315 GERQTLLFSATFTEDVMNLAKQWTVDPAIVEIEPEHVASDSVEQHVYAVAGSDKYRLLYN 374

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                +++  +  ++F N+K  V  +   L K G S   + G++ Q  R+K+L  F+EG 
Sbjct: 375 L---VTRNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIKVLEGFREGR 431

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ +  V HV N+ +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 432 IRVLVATDVAGRGIHVEGVSHVINYTLPEDPDDYVHRIGRTGRAGSKGTSISFAGEDDAF 491

Query: 356 HIDAIEKLIEKKVD 369
            +  IE L+ +K+D
Sbjct: 492 ALPPIEALLGRKID 505


>gi|195338535|ref|XP_002035880.1| GM15916 [Drosophila sechellia]
 gi|194129760|gb|EDW51803.1| GM15916 [Drosophila sechellia]
          Length = 681

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 122/382 (31%), Positives = 200/382 (52%), Gaps = 9/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    L   +V  V  +GY  PTPIQ + IP++    D+   AQTG+GKTASF+LP+++
Sbjct: 266 NFTSADLRGIIVENVKKSGYKVPTPIQKRAIPVITAGRDLMACAQTGSGKTASFLLPIIS 325

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P+ +I+ PTRELA Q+ D   K+     L + ++ GG  F  QN  +
Sbjct: 326 KLLDDPQDLEFGRPQAVIVSPTRELAIQIFDEARKFAYETYLKIGIVYGGTSFRHQNDCI 385

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G+ VLI T GR+LD  +R  +   +   +V+DEADRMLDMGF   ++ + + V    Q
Sbjct: 386 TKGSHVLIATLGRLLDFVDRAFVTFEDTRFVVLDEADRMLDMGFSEGMRKLMTHVTMRPQ 445

Query: 180 TL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
               +FSAT  +++Q+++  FL N                      T  + SK     + 
Sbjct: 446 HQTLMFSATFPEDIQRLAGEFLNNYVF----VAIGMVGGACSDVKQTIYEVSKFNKRAKL 501

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +   ++     I+F   K+    L   L +  F   +IHG+  Q  R + L +FK G+++
Sbjct: 502 MEILREEADGTIVFVETKRGADFLASYLSETEFPTTSIHGDRLQSQREQALRDFKNGSMK 561

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKH 356
           +++A+ +A+RGLDI ++ HV N+D+P   ++Y+HRIGRTGR G +G+A T    + D   
Sbjct: 562 VLIATSVASRGLDIKNIKHVINYDMPKNIDDYVHRIGRTGRVGNNGRATTFFDPDQDRVI 621

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
              + K+++     +   L +L
Sbjct: 622 AADLIKILDGAGQTVPEFLRNL 643


>gi|157962823|ref|YP_001502857.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157847823|gb|ABV88322.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 445

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 147/450 (32%), Positives = 230/450 (51%), Gaps = 17/450 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F    L PK++ AV   GY + T +Q + +P+ ++  D+   AQTGTGKTA+F LP+L
Sbjct: 1   MNFDAFDLHPKILDAVSARGYQQLTQVQSQVLPVAMEGKDIMACAQTGTGKTAAFALPLL 60

Query: 61  TILEKGR----------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
             L K                  + L+L PTRELA QVADN   Y +        + GG 
Sbjct: 61  NTLIKEYSLFTDSEAELTHQSSVKVLVLTPTRELAIQVADNITAYAQFLPFKTTAVYGGS 120

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q K L+ G D+L+ TPGR+ DH  +  L ++N+  LV+DEADRMLD+GF+  I+ +
Sbjct: 121 NMNPQRKALQAGVDILVATPGRLFDHIGQFGLDLSNVTHLVVDEADRMLDLGFVRDIEKV 180

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
             LV    QTL FSAT +D ++ ++E  L  P+ I V T    + T        Y   ++
Sbjct: 181 KKLVAPAHQTLFFSATYSDAVKTLAEKMLIAPEWINVAT----SATASLITQEIYLVDTR 236

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           + A L   L  ++  +  ++F + +++  +L   L+  G      HG   Q +R + L  
Sbjct: 237 RKAELLSELIGRNNWQQVLVFVSTRESAEHLHAELKLDGVKNAVFHGEKTQGARNRALEE 296

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G +++MVA+D+AARGLDI  +  V N ++P  AE+Y+HR+GRTGRAG  G+A + V+
Sbjct: 297 FKSGKLRVMVATDVAARGLDIEALPLVINLELPFAAEDYVHRVGRTGRAGLAGRAISFVS 356

Query: 351 KEDIKHIDAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
            +D + +  IE LI + +    + G       P    D+       K +   +K    +R
Sbjct: 357 PQDREMMQEIEVLIAQTLPRITMPGYEEGAPLPARYRDVVVKPVKEKGHN-KRKYEDKNR 415

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQEN 438
             KN   + ++      +      +D  + 
Sbjct: 416 PAKNAVGKSNYRSAASGKSSYGRSKDKAKK 445


>gi|328867087|gb|EGG15470.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 637

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 120/403 (29%), Positives = 206/403 (51%), Gaps = 10/403 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F  L +  K   A+   G+   TPIQ K+I  +LQ  D+ G A+TG+GKT +F++P +
Sbjct: 147 IEFEKLPIEEKTKLAIATMGFKTMTPIQAKSIVPLLQGRDMLGAARTGSGKTLAFLIPAI 206

Query: 61  TILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L K     R     +I+ PTRELA Q+     +   +++ T  +++GG   +A+ ++L
Sbjct: 207 EVLVKSNFYPRNGTGVIIMSPTRELALQIYGVAAELMAHHSQTHGIIMGGADKKAEAERL 266

Query: 120 ERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +G ++L+ TPGR +    N    ++ N++ LVIDEADRML++GF   +  I  L+P  R
Sbjct: 267 VKGVNLLVATPGRLLDHLQNTRGFVVKNLKCLVIDEADRMLEVGFEEEMHQIVKLLPKER 326

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT ++++  ++    ++              T+E          S+K  LL   
Sbjct: 327 QTMLFSATQSNKVDAIARVSFRSDPVYVGVDDDRQVSTVEGLEQGYVVCPSEKRFLLLYT 386

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +   +V      L      V A HG   Q  R      F      +
Sbjct: 387 FLKKNLNKKVIVFFSSCNSVKFHAELLNYIDIPVLAFHGKQKQTLRTNTFYEFVNAQKGI 446

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHI 357
           ++ +D+AARG+DIP V  +  +D P+  + YIHR+GRT R  G+ G+A   +  +++  +
Sbjct: 447 LLCTDVAARGVDIPSVDWIIQYDPPDDPKEYIHRVGRTARGTGKKGRALMFLLPQELGFL 506

Query: 358 DAIEKLIEKKV---DWLNGDLSSLNPPLEKI---DIAQHNHAR 394
             + KL +  +   ++    +S++   LEK+   +   HN AR
Sbjct: 507 KYL-KLAKVPLNEYEFPQKKVSNVQEQLEKLISHNFYLHNSAR 548


>gi|238498592|ref|XP_002380531.1| DEAD/DEAH box RNA helicase [Aspergillus flavus NRRL3357]
 gi|220693805|gb|EED50150.1| DEAD/DEAH box RNA helicase [Aspergillus flavus NRRL3357]
          Length = 1201

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 129/438 (29%), Positives = 212/438 (48%), Gaps = 18/438 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL  + +  +   GY  PT IQ + IP ++   DV G+A+TG+GKT +F++PM  
Sbjct: 570 KWSQCGLGVQTLDVIDRLGYSAPTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFR 629

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++  R    +  P  LI+ PTRELA Q+  + + + K  NL      GG P + Q   L
Sbjct: 630 HIKDQRPLENMEGPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADL 689

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D           +  +  +V+DEADRM DMGF P +  I + V  
Sbjct: 690 KRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILANVRP 749

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +QT+LFSAT    ++ ++   L  P  I V   S  A  I                L  
Sbjct: 750 DKQTVLFSATFPRNMEALARKTLNKPVEIVVGGRSVVAPEITQIVEVRSEDKKFIRLLEL 809

Query: 237 ---QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                   ++     +IF  +++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 810 LGNLYSTDENEDARALIFVERQEGADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKA 869

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 870 GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 929

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            ++   I K +++    +   +  + +  LEK+   +   +         ++GF  +   
Sbjct: 930 ERYSVDIAKALKQSGQSVPEPVQKMVDSFLEKVKAGKEKAS---------ASGFGGKGLE 980

Query: 413 YSSQKSHIPLKESEKISK 430
              Q+         K  K
Sbjct: 981 RLDQERDAARMRERKTYK 998


>gi|7573310|emb|CAB87628.1| DRH1 DEAD box protein-like [Arabidopsis thaliana]
          Length = 713

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 127/364 (34%), Positives = 200/364 (54%), Gaps = 2/364 (0%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-PR 74
           V  AG+  P+PIQ ++ P+ +Q  D+  IA+TG+GKT  +++P    L++     RM P 
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPT 303

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTRELA Q+     K+GK+  ++ A L GG P   Q K++ERG D+++ TPGR+ 
Sbjct: 304 ILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLN 363

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D     ++ ++ +  LV+DEADRMLDMGF P I+ I + VP  RQTL+++AT   E++K+
Sbjct: 364 DILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKI 423

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           + + L NP ++ +                       +     + +       + II    
Sbjct: 424 AADLLVNPAQVNIGNVDELVANKSITQTIEVLAP-MEKHSRLEQILRSQEPGSKIIIFCS 482

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
            K + +       + F   AIHG+  Q  R  +L+ F+ G   ++VA+D+AARGLD+ D+
Sbjct: 483 TKRMCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDI 542

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
             V N+D PN  E+Y+HRIGRTGRAG  G A+T    +D KH   + K++E     +   
Sbjct: 543 RVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQ 602

Query: 375 LSSL 378
           +  +
Sbjct: 603 VREM 606


>gi|79513425|ref|NP_196965.2| ATP binding / ATP-dependent helicase/ helicase/ nucleic acid
           binding / protein binding [Arabidopsis thaliana]
 gi|332004671|gb|AED92054.1| DEAD-box ATP-dependent RNA helicase 46 [Arabidopsis thaliana]
          Length = 712

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 127/364 (34%), Positives = 200/364 (54%), Gaps = 2/364 (0%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-PR 74
           V  AG+  P+PIQ ++ P+ +Q  D+  IA+TG+GKT  +++P    L++     RM P 
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPT 303

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTRELA Q+     K+GK+  ++ A L GG P   Q K++ERG D+++ TPGR+ 
Sbjct: 304 ILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLN 363

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D     ++ ++ +  LV+DEADRMLDMGF P I+ I + VP  RQTL+++AT   E++K+
Sbjct: 364 DILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKI 423

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           + + L NP ++ +                       +     + +       + II    
Sbjct: 424 AADLLVNPAQVNIGNVDELVANKSITQTIEVLAP-MEKHSRLEQILRSQEPGSKIIIFCS 482

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
            K + +       + F   AIHG+  Q  R  +L+ F+ G   ++VA+D+AARGLD+ D+
Sbjct: 483 TKRMCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDI 542

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
             V N+D PN  E+Y+HRIGRTGRAG  G A+T    +D KH   + K++E     +   
Sbjct: 543 RVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQ 602

Query: 375 LSSL 378
           +  +
Sbjct: 603 VREM 606


>gi|169781778|ref|XP_001825352.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Aspergillus
           oryzae RIB40]
 gi|91207409|sp|Q2U2J6|PRP5_ASPOR RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|83774094|dbj|BAE64219.1| unnamed protein product [Aspergillus oryzae]
          Length = 1186

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 129/438 (29%), Positives = 212/438 (48%), Gaps = 18/438 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL  + +  +   GY  PT IQ + IP ++   DV G+A+TG+GKT +F++PM  
Sbjct: 555 KWSQCGLGVQTLDVIDRLGYSAPTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFR 614

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++  R    +  P  LI+ PTRELA Q+  + + + K  NL      GG P + Q   L
Sbjct: 615 HIKDQRPLENMEGPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADL 674

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D           +  +  +V+DEADRM DMGF P +  I + V  
Sbjct: 675 KRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILANVRP 734

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +QT+LFSAT    ++ ++   L  P  I V   S  A  I                L  
Sbjct: 735 DKQTVLFSATFPRNMEALARKTLNKPVEIVVGGRSVVAPEITQIVEVRSEDKKFIRLLEL 794

Query: 237 ---QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                   ++     +IF  +++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 795 LGNLYSTDENEDARALIFVERQEGADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKA 854

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 855 GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 914

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            ++   I K +++    +   +  + +  LEK+   +   +         ++GF  +   
Sbjct: 915 ERYSVDIAKALKQSGQSVPEPVQKMVDSFLEKVKAGKEKAS---------ASGFGGKGLE 965

Query: 413 YSSQKSHIPLKESEKISK 430
              Q+         K  K
Sbjct: 966 RLDQERDAARMRERKTYK 983


>gi|320582192|gb|EFW96410.1| ATP-dependent RNA helicase, putative [Pichia angusta DL-1]
          Length = 428

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 124/415 (29%), Positives = 187/415 (45%), Gaps = 17/415 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA LGL   +V ++      +PT IQ   IP +L+  D  G A+TG+GKT +F  PML 
Sbjct: 3   DFASLGLPRWLVESLQAMKITRPTNIQAACIPEILKGRDCIGGAKTGSGKTIAFGAPMLA 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE---AQNKK 118
              +          L+L PTRELA Q+AD F   G   NL V L+IGG       A  K+
Sbjct: 63  KWSQ---DPSGIFGLVLTPTRELAMQIADQFAALGATVNLKVRLIIGGESMTDQVAMIKE 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                         I+         +  ++ LV+DEADR+L   F  ++Q     +P + 
Sbjct: 120 NPHFIIATPGRLAHIIMENEDECRGLKRVKYLVLDEADRLLTDSFTDHLQTCFEALPNSN 179

Query: 179 QTLL--FSATMTDELQ-----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +     F+AT+TD ++      V+            N  +    +             K+
Sbjct: 180 KRQTLLFTATVTDSVRALKDRPVAPGKQPVFLHELDNVDTVKIPSTLRLLYVLAPVVVKE 239

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L   L          I+F N+ +    L   L     +  ++H  + Q  R   L  F
Sbjct: 240 SMLHNILTNEDYKESTAIVFVNRSETAEILRRLLRHLEVTTTSLHSEMPQSERTNSLHRF 299

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G  +++VA+DLA+RGLDIP V  V NFD+P   ++Y+HR+GRT RAGR G A ++V  
Sbjct: 300 RAGAARVLVATDLASRGLDIPSVELVINFDIPRDPDDYVHRVGRTARAGRKGDAISMVTP 359

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
            D+  I AIE  +  K++ L   LS     + K  +   + A+    +  +  GF
Sbjct: 360 NDLSRILAIEDRVGVKMEELP--LSD--NKVIKQSLKAVSKAKIEARMDMEREGF 410


>gi|320581342|gb|EFW95563.1| Putative nucleolar DEAD box RNA helicase [Pichia angusta DL-1]
          Length = 742

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 127/453 (28%), Positives = 224/453 (49%), Gaps = 23/453 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F DL L+   +  V ++ YV  T IQ  +IPL L+ HD+ G A+TG+GKT +F++P + 
Sbjct: 44  KFDDLPLTKNTLRGVKESSYVTMTDIQRDSIPLALKGHDILGAAKTGSGKTLAFLIPVIE 103

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ++ +          LI+ PTRELA Q+ +   K GK+++ +  L+IGG  +E + +++ 
Sbjct: 104 KLVHENWNEFDGVGALIISPTRELAMQIYEVLLKIGKHHSFSAGLVIGGKDYEFEKERIG 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      +        L + N++ILV+DEADR+LD+GF   + +I S +P  RQ+
Sbjct: 164 KMNILIGTPGRLLQHMDQSATLNLTNLQILVLDEADRILDLGFKKTLDDIISNLPPERQS 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT T  +Q ++   L NP+ +  ++ +S+                K   L   +  
Sbjct: 224 LLFSATQTKSVQDLARLSLVNPEYVNASSDTSSTPESLEQSYVVIRLQDKLDILWSFIKS 283

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D+     +  +++ + +       + G S+  +HG   Q++RM+    F E     + 
Sbjct: 284 HLDSKILVFVSSSKQVHFIYEAFRKLQPGISLMKLHGRQKQKARMETTFKFTESRHCCLF 343

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARGLD P +  V   D P     YIHR+GR+ RAGR GK+  ++   + +    +
Sbjct: 344 ATDVVARGLDFPAIDWVVQLDCPEDVATYIHRVGRSARAGRAGKSLLMLTPSEEEPF--V 401

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           ++L  KK+              +K++I   N  +K+     +S  F      Y  QK+ I
Sbjct: 402 KRLESKKI------------APKKLNI--RNSKKKSIRDQIQSLCFKSPDLKYLGQKAFI 447

Query: 421 P------LKESEKISKLQQDIQENDADSLGFRG 447
                  +++ +++  ++Q   +  A SLG  G
Sbjct: 448 SYVKSVYIQKDKEVFDVKQLPLDEFAKSLGLPG 480


>gi|148272372|ref|YP_001221933.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830302|emb|CAN01236.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 509

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 130/394 (32%), Positives = 206/394 (52%), Gaps = 3/394 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +   +V A+ D G ++P PIQ +TIPL L   D+ G A+TGTGKT  F LP+ 
Sbjct: 1   MTFTELNIDEDMVQALADHGILEPFPIQEQTIPLALSGQDIIGQAKTGTGKTFGFGLPL- 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I   G       + L++ PTRELA QV ++ +   K+   TV  + GG  +E Q ++L+
Sbjct: 60  -IQRLGLTPEPGVQALVVVPTRELAVQVTEDLQIATKHRATTVVSIYGGKAYEGQIEQLK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+LD   +  L + N+  +V+DEAD+MLD+GF+  I+ + +  P  R T
Sbjct: 119 AGAQIVVGTPGRLLDLVGQRLLSLQNVREMVLDEADKMLDLGFLSDIEKLFAQTPAVRHT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +  ++  F          T         +     Y  ++     +   + 
Sbjct: 179 MLFSATMPGPIVALARRF-MTKPIHIRATDPDEGLMQANIRHLVYRAHNMDKDEVIGRIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     +IF   K+    L   L  +GF+  A+HG+++Q  R + ++ FK G   +++
Sbjct: 238 QAEGRGKTVIFTRTKRAAARLVEELNDRGFNAAAVHGDLNQEQRERAMAAFKAGKKDILI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV HV N  +P   + Y+HR+GRTGRAG+ G A T V  +D+     I
Sbjct: 298 ATDVAARGIDVLDVTHVINHTIPEDDKAYLHRVGRTGRAGKTGIAVTFVDWDDLHKWALI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
            + +E          SS       +DI   +  R
Sbjct: 358 NRALEFGQPEPTETYSSSPHLYTDLDIPAGSKGR 391


>gi|223933109|ref|ZP_03625101.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
 gi|302024360|ref|ZP_07249571.1| helicase [Streptococcus suis 05HAS68]
 gi|330833357|ref|YP_004402182.1| DEAD/DEAH box helicase domain-containing protein [Streptococcus
           suis ST3]
 gi|223898170|gb|EEF64539.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
 gi|329307580|gb|AEB81996.1| DEAD/DEAH box helicase domain protein [Streptococcus suis ST3]
          Length = 447

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 116/380 (30%), Positives = 188/380 (49%), Gaps = 12/380 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D+ L P +  A+ +  +V+PT +Q K IP+VL   D+ G ++TG+GKT +F++P+ 
Sbjct: 1   MKFTDMKLKPYIQEALKEINFVQPTEVQEKLIPVVLSGRDLIGESKTGSGKTHTFLIPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   +V+     I  P+RELA Q+     +   + ++ V +       +   +  +
Sbjct: 61  QKLSEELDQVQAV---ITAPSRELATQIYQAARQLASHSDIEVRVTNYVGGTDKNRQIDK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  +++ TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LQASQPHIVVGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI        +   +       
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEQIKTHTVISDTI---ENWLISTKGRDRNAQIL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K     L   L   G  V  IHG+I  R R ++++  K    Q
Sbjct: 235 EVTKLMQPYLAMIFVNTKTRADELHSYLTANGLRVAKIHGDIPPRERKRMMNQVKNLDYQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGIAITLYQPSDDADI 354

Query: 358 DAIEKLIEKKVDWLNGDLSS 377
             +EKL    + +L  ++ +
Sbjct: 355 RELEKL---NIKFLPKEMKN 371


>gi|213403328|ref|XP_002172436.1| ATP-dependent RNA helicase dbp8 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000483|gb|EEB06143.1| ATP-dependent RNA helicase dbp8 [Schizosaccharomyces japonicus
           yFS275]
          Length = 456

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 129/432 (29%), Positives = 207/432 (47%), Gaps = 17/432 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+SP +V  +      +PTPIQ   I  VL+  D  G A+TG+GKT +F LP+L 
Sbjct: 8   TFGSLGISPWLVETLQAVAIQEPTPIQKGVIKKVLEGADCIGGAKTGSGKTIAFALPILE 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +          +IL PTRELA Q+ + F   G   NL   L++GG+   AQ   L +
Sbjct: 68  KWAR---DPFGTFAVILTPTRELAIQIDEQFAALGAPMNLKHILVVGGMDMVAQAIALSK 124

Query: 122 GADVLICTPGRILDHFNRG----KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              +++ TPGR+ D            ++  + +V DEADR+L   F   + +   ++P  
Sbjct: 125 RPHIVVATPGRLADLIRSNGEETYASLHRTQFVVFDEADRLLSPTFADDLDDCLEVLPPP 184

Query: 178 RQTLL--FSATMTDELQ----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            +     F+ATMTD ++    +            EV+T   +            A + + 
Sbjct: 185 EKRQTLLFTATMTDAIRALKDREPHPGKPPLWLYEVDTEGVSIPESLEQHYLLVASHVRD 244

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L+Q L   ++  K+ I+F N+   V  L   L    F V  +H  + QR R+  L  F
Sbjct: 245 AYLVQLLSSPENEDKSVIVFANRTYTVELLYRMLRLLDFRVTCLHSEMAQRERVNSLGRF 304

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +    ++++A+D+A+RGLDIP V  V N+D+P   ++Y+HR+GR  R GR G++ + V +
Sbjct: 305 RAEAARVLIATDVASRGLDIPSVKMVVNYDIPRDPDDYVHRVGRAARVGRFGESVSFVTE 364

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            D+  I AIE  + K++        S N  LEK+   Q N A++   +      F  R+K
Sbjct: 365 HDVDLIHAIEDRVGKQMTAYESF--SENKMLEKL--KQINEAKRKVSLELVDEDFGSRRK 420

Query: 412 NYSSQKSHIPLK 423
               ++  +  K
Sbjct: 421 KLKEKRMMMASK 432


>gi|168059277|ref|XP_001781630.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666944|gb|EDQ53586.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1072

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 111/382 (29%), Positives = 175/382 (45%), Gaps = 34/382 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            +   GL+ KV+  +  +G+ KP PIQ + +P+++   D  GIA+TG+GKT +FVLPM  
Sbjct: 479 TWNQTGLNSKVLDVIKKSGFEKPMPIQTQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLR 538

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +    +   P  LI+ PTREL  Q+ ++  K+ K   LT   + GG     Q   L
Sbjct: 539 HIMDQPPLQQGDGPIGLIMAPTRELVQQIYNDIRKFSKVVGLTCVPVYGGSGVAQQISDL 598

Query: 120 ERGADVLICTPGRILDHFNR---GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RG ++++CTPGR++D           +  +  LV+DEADRM DMGF P I  I      
Sbjct: 599 KRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNTRP 658

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT   +++ ++   L  P  I++   S     I                L  
Sbjct: 659 DRQTVLFSATFPRQVEVLARKVLTKPVEIQIGGRSVVNSDITQTVEVRPESERFLRLLEL 718

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                +       +   +K++ +    +         +I                     
Sbjct: 719 LGEWYEKGKILVFVHSQEKESTITDFKTSVCNLMIATSIAAR------------------ 760

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
                      GLD+ ++  V N+DVPN  E+Y+HR+GRTGRAGR G A T ++ E+ ++
Sbjct: 761 -----------GLDVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKGFAVTFISTEEERY 809

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
              + K +E     +  DL  L
Sbjct: 810 APDLVKALELSEQPIPEDLKKL 831


>gi|115491279|ref|XP_001210267.1| hypothetical protein ATEG_00181 [Aspergillus terreus NIH2624]
 gi|121743211|sp|Q0D1K3|PRP5_ASPTN RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|114197127|gb|EAU38827.1| hypothetical protein ATEG_00181 [Aspergillus terreus NIH2624]
          Length = 1181

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 129/438 (29%), Positives = 212/438 (48%), Gaps = 18/438 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL  + +  +   GY  PT IQ + IP ++   DV G+A+TG+GKT +F++PM  
Sbjct: 550 KWSQCGLGVQTLDVIDRLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTVAFLIPMFR 609

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++  R    +  P  LI+ PTRELA Q+  + + + K  NL      GG P + Q  +L
Sbjct: 610 HIKDQRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAEL 669

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D           +  +  +V+DEADRM DMGF P +  I + V  
Sbjct: 670 KRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANVRP 729

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT    ++ ++   L  P  I V   S  A  I                L  
Sbjct: 730 DRQTVLFSATFPRNMEALARKTLNKPVEIVVGGKSVVAPEITQIVEVRNEDKKFVRLLEL 789

Query: 237 ---QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                   ++     +IF  +++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 790 LGNLYSSDENEDARALIFVERQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKA 849

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 850 GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 909

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            +    I K +++    +   +  + +  LEK+   +   +         ++GF  +   
Sbjct: 910 ERFSVDIAKALKQSGQKVPEPVQQMVDSFLEKVKAGKEKAS---------ASGFGGKGLE 960

Query: 413 YSSQKSHIPLKESEKISK 430
              Q+         +  K
Sbjct: 961 RLDQERDAARMRERRTYK 978


>gi|145974735|gb|ABQ00071.1| VASA [Fenneropenaeus chinensis]
          Length = 712

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 121/387 (31%), Positives = 198/387 (51%), Gaps = 12/387 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P ++  ++ AGY  PTP+Q  TIP V+   D+ G AQTG+GKTA+F+LPML 
Sbjct: 271 SFQSMNLRPLLLENIVKAGYGCPTPVQKYTIPNVMNGRDIMGCAQTGSGKTAAFLLPMLH 330

Query: 62  ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +               P  L++ PTRELA Q+     K+  +      +  GG      
Sbjct: 331 HILDNNCPSNAFEEPAQPTGLVICPTRELAIQIMREARKFSHSSVAKCCVAYGGAAGFHH 390

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF----IPYIQNIT 171
            K +  G  +L+ TPGR+LD   +GK++ ++++ LV+DEADRMLDMGF       I + T
Sbjct: 391 LKTIHSGCHILVATPGRLLDFVEKGKIVFSSLKYLVLDEADRMLDMGFLSSIKTVINHKT 450

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 R TL+FSAT  +E+Q+++  FL N   + V +  +    ++   +       K 
Sbjct: 451 MTPTADRITLMFSATFPNEIQELASAFLNNYLFVVVGSVGAANTDVKQEVLCVPKFEKKA 510

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSN 290
             +        +     I+   ++K V +   +   ++ F    +HG+  Q  R + L++
Sbjct: 511 KLVEMCEEILINADDEKILVFVEQKRVADFVGTYLCEKNFRATTMHGDRYQAQREQALTD 570

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI  +G V N+D+P   + Y+HRIGRTGR G  G + +   
Sbjct: 571 FRTGVFNILVATAVAARGLDIKGIGVVVNYDLPKEIDEYVHRIGRTGRLGNRGLSISFYD 630

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLS 376
           +E D+     + K++ +    +   L+
Sbjct: 631 EEADVCLTKDLVKVLSEAKQTVPDWLT 657


>gi|115533224|ref|NP_001041134.1| hypothetical protein F58E10.3 [Caenorhabditis elegans]
 gi|3877954|emb|CAB04518.1| C. elegans protein F58E10.3a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 561

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 135/427 (31%), Positives = 214/427 (50%), Gaps = 15/427 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F +  L  ++   +    + KPT IQ  + P+ +   D+  IA+TG+GKT +F+LP   
Sbjct: 131 EFNEAPLPGQIHELLYGK-FQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALV 189

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +  R R   P  L+L PTRELA QV +    +  +  L +  L GG     Q + L
Sbjct: 190 HITKQAHRQRGEGPAVLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDL 249

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+++ TPGR+LD  + G   M     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 250 ERGVDIVVATPGRLLDFLDNGTTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIRPDRQ 309

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ-L 238
           TL+FSAT   E++ ++ +F ++   + V +    A       V    +++K+  L++   
Sbjct: 310 TLMFSATWPKEVRALASDFQKDAAFLNVGSLELAANHNITQVVDILEEHAKQAKLMELLN 369

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     IIF   K+    L  ++ + G+    IHG+ +Q  R  +L  FK G   +
Sbjct: 370 HIMNQKECKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPI 429

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           M+A+D+AARGLD+ D+  V N+D PN +E+Y+HRIGRTGR+ + G A+T     +     
Sbjct: 430 MLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASKAK 489

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            + K++         D +    P    D+A  ++   N+       GF  +K+ Y    +
Sbjct: 490 DLLKVL---------DEAKQTVPQALRDMANRSYGGSNSRGRYGGGGF--QKRGYGGNDN 538

Query: 419 HIPLKES 425
             P +  
Sbjct: 539 FAPKRPR 545


>gi|293628906|dbj|BAJ04860.1| vasa homolog [Cynops pyrrhogaster]
          Length = 717

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 123/390 (31%), Positives = 202/390 (51%), Gaps = 14/390 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGY K TP+Q  +IP+VL + D+   AQTG+GKTA+F+LP+L
Sbjct: 275 LTFEEANLPETLNKNISKAGYAKLTPVQKHSIPIVLAKRDLMACAQTGSGKTAAFLLPIL 334

Query: 61  TILEKGRARVR-----MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             + +            P  +I+ PTREL  Q+  +  K+     +   ++ GG      
Sbjct: 335 AHMMQDGVAPHSLDLQEPEAIIVAPTRELINQIFLDARKFAYGTCIKPVVVYGGTQTFHS 394

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----IT 171
            +++ +G ++L  TPGR+LD   R K+ +  +  LV+DEADRMLDMGF P ++       
Sbjct: 395 LRQIYQGCNILCATPGRLLDIIRREKIGLAKLRYLVLDEADRMLDMGFGPDMKILITSPG 454

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTL+FSAT  + +Q +++ FL++     V      A +     +    Q+ KK
Sbjct: 455 MPSKEERQTLMFSATFPERIQSLAKEFLKSDYLFVVVGQVGGACSDVEQIIIPVGQHGKK 514

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L++  +      +  ++F   KK    L   L ++     +IHG+  Q+ R + L++F
Sbjct: 515 DKLVE--ILQGLGTERTMVFVKTKKKADYLTTLLCQENVLATSIHGDRLQKEREEALADF 572

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G   ++VA+++AARGLDI +V HV  FD+ +  E Y+HRIGRTGR G  GKA T    
Sbjct: 573 RFGKCNVLVATNVAARGLDIENVQHVIIFDLSDNIEEYVHRIGRTGRCGNVGKAITFFDS 632

Query: 352 EDIKH---IDAIEKLIEKKVDWLNGDLSSL 378
           +D +      ++ K++      +   L  +
Sbjct: 633 DDNEDRTVARSLVKVLSDAQQEVPVWLEEI 662


>gi|38372907|ref|NP_932099.2| ATP-dependent RNA helicase DDX39A [Mus musculus]
 gi|61213001|sp|Q8VDW0|DX39A_MOUSE RecName: Full=ATP-dependent RNA helicase DDX39A; AltName: Full=DEAD
           box protein 39
 gi|18044894|gb|AAH20134.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Mus musculus]
 gi|74181505|dbj|BAE30021.1| unnamed protein product [Mus musculus]
 gi|74184027|dbj|BAE37049.1| unnamed protein product [Mus musculus]
 gi|74207612|dbj|BAE40052.1| unnamed protein product [Mus musculus]
 gi|74219249|dbj|BAE26758.1| unnamed protein product [Mus musculus]
 gi|74226811|dbj|BAE27051.1| unnamed protein product [Mus musculus]
 gi|148678969|gb|EDL10916.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, isoform CRA_b [Mus
           musculus]
          Length = 427

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 165/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY  +  ++V      I  +    K    
Sbjct: 106 IEPVNGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    +R   L N    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 166 HVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRFEVNVAELPEEID 418


>gi|262369669|ref|ZP_06062997.1| superfamily II DNA and RNA helicase [Acinetobacter johnsonii SH046]
 gi|262315737|gb|EEY96776.1| superfamily II DNA and RNA helicase [Acinetobacter johnsonii SH046]
          Length = 383

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 126/372 (33%), Positives = 200/372 (53%), Gaps = 6/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P++  A+   G+   TPIQ K +   L  HD  G AQTGTGKTA+F++ ++  
Sbjct: 5   FETLNLHPQLKRAIDALGFKDMTPIQQKVLKFTLAGHDAIGRAQTGTGKTAAFLVSVIND 64

Query: 63  LEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L     + +     PR LIL PTRELA Q+  + ++  K  +L V  L+GG+ F+ Q  +
Sbjct: 65  LLNNPIQEQRYRGEPRALILAPTRELALQIESDAKELTKFSDLHVVTLLGGVDFDKQKAQ 124

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             ++  D+++ TPGR++D   + ++ ++ IE LVIDEADR+LDMGFIP ++ I    P  
Sbjct: 125 LDKKPVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPRK 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q      + T     V     Q              +T        Y         L Q
Sbjct: 185 EQRQTLMFSAT-FSYDVLNLAQQWLFEPVTVEIEPEKKTNADVEQRVYMVAKSDKYKLLQ 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   + ++  +IF N++  V  L  +L++ G+ V  + G I Q  R+K+L  FK G   
Sbjct: 244 DILRDEPIEKVMIFANRRDQVRKLYDNLKRDGYKVVMLSGEIAQDKRLKMLDQFKNGQHN 303

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +M+A+D+A RG+ +  V HV NF +P ++++Y+HRIGRTGRAG  G + + ++++D  ++
Sbjct: 304 IMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGTRGVSISFLSEDDAFYL 363

Query: 358 DAIEKLIEKKVD 369
             IEK I +K+ 
Sbjct: 364 PEIEKAIGQKLP 375


>gi|74214685|dbj|BAE31182.1| unnamed protein product [Mus musculus]
          Length = 427

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 165/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY  +  ++V      I  +    K    
Sbjct: 106 IEPVNGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    +R   L N    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 166 HVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDHETKLTLHGLQQYYVKLKDSEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRFEVNVAELPEEID 418


>gi|198466271|ref|XP_002135148.1| GA23405 [Drosophila pseudoobscura pseudoobscura]
 gi|198150524|gb|EDY73775.1| GA23405 [Drosophila pseudoobscura pseudoobscura]
          Length = 597

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 119/454 (26%), Positives = 200/454 (44%), Gaps = 29/454 (6%)

Query: 1   MDFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFV 56
           + F DL     L P++   VL  G+ +PTPIQ++ +P++ Q+  +   A TG+GKT +F+
Sbjct: 119 LSFDDLIRDYKLLPRLQQNVLSYGFSQPTPIQMQALPVLFQKRALMACAPTGSGKTLAFL 178

Query: 57  LPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFE 113
            P++  L     +    R L+L PTRELA Q+     +  +   L    +          
Sbjct: 179 TPIINGLRS--HKTTGLRALVLAPTRELAQQIYRECSELTRETGLRTHFISKVSEAKQKH 236

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN---- 169
               K +    +      R L       L +  +E  V+DEADR+++ G   + +     
Sbjct: 237 GAECKQKYDILISTPNRVRFLLQQQPPLLDLKGVEWFVLDEADRLMEEGQNNFKEQLDDI 296

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
             +     +    FSAT T  + K +   L+N  RI +   +S  +T++   +   ++  
Sbjct: 297 YAACSHPQKCVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATDTVQQELLFVGSESG 356

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K  A+  + L  Q      ++F   K     L   L   G +V  IH    Q  R   + 
Sbjct: 357 KLVAM--RNLVRQGLQPPVLVFVQSKDRAKQLFEELLYDGINVDVIHAERSQHQRDNCVR 414

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+EG I +++ ++L  RG+D   V  V N+D P    +YIHRIGRTGRAGR G+A T  
Sbjct: 415 AFREGNIWVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFF 474

Query: 350 AKEDIKHIDAIEKLIE-------------KKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
            ++D  ++ +I  +I+             KKV      + +   PLE+ DI+       +
Sbjct: 475 TQDDTANLRSIALIIKNSGGTVPEYMLQMKKVRKSEARIRA-KKPLEREDISTKIRPEAS 533

Query: 397 NPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISK 430
               QKS    + +K  +  K     + + K ++
Sbjct: 534 IEATQKSAKLQKIQKAENILKKRAGRENATKTTQ 567


>gi|326693663|ref|ZP_08230668.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
           [Leuconostoc argentinum KCTC 3773]
          Length = 454

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 134/455 (29%), Positives = 221/455 (48%), Gaps = 24/455 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L P+++ A+   G+ KPTP+Q K IP +LQ  DV G +QTG+GKT +F++P+  
Sbjct: 7   QFGQFNLKPEIIIALTKIGFTKPTPVQAKLIPAILQGKDVVGQSQTGSGKTHTFLIPIFN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNKK 118
            LE+ R  V+     I  P+RELAAQ+    + +    N  + +              + 
Sbjct: 67  QLEQDRQYVQAV---ITTPSRELAAQITKAAKDFASQLNPDITIAEYVGGTDKLRQIKQL 123

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 ++I TPGRI D    G L ++ +  +V+DEAD  LDMGF+  +  I   +P   
Sbjct: 124 ENNQPQIVIGTPGRIKDLVESGALKLHAVHTMVVDEADMTLDMGFLTEVDYIAGAMPKDL 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSATM ++L+   + ++ NP    +   +  A+TI        A  SK    +   
Sbjct: 184 QTLVFSATMPEKLKPFLKKYMANPLFEAIPVSTVIADTI---ENWLLATKSKDKNDVIYQ 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +       +IF N K     +   L  +G  V  IHG+I+ R R +++   +    Q 
Sbjct: 241 VLTTGNPYLALIFANTKDRAKEIASDLRGRGLKVAEIHGDIEPRERRRVMKAIQNLEYQY 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
            VA+DLAARG+DI  V HV N D+P+  E ++HR+GRTGR G  G A TL   ++   + 
Sbjct: 301 FVATDLAARGIDIEGVSHVINDDIPSELEFFVHRVGRTGRNGMPGLAITLYGPDEEDEVA 360

Query: 359 AIEKL-IE-KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP---------IPQKSTGFD 407
            +E L I+ K +   NG+   +     +    +    RK +P               G+ 
Sbjct: 361 ELEALGIDFKAMQLKNGEFVPVKD--RRARTQRVATTRKLDPTMVGMVKKKKKVVKPGYK 418

Query: 408 RRKKNYSSQKSHIPLK--ESEKISKLQQDIQENDA 440
           R+ K+   +K+ +  +  + E++  +++  ++   
Sbjct: 419 RQIKSAIQRKNQMDRRIAKREEMRAVRKSNKKRGG 453


>gi|308502287|ref|XP_003113328.1| hypothetical protein CRE_25199 [Caenorhabditis remanei]
 gi|308265629|gb|EFP09582.1| hypothetical protein CRE_25199 [Caenorhabditis remanei]
          Length = 698

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 126/395 (31%), Positives = 202/395 (51%), Gaps = 19/395 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L   +   +  AGY +PTP+Q  +IP +    D+   AQTG+GKTA+F++P++  
Sbjct: 229 FSDLSLHEWIEDNIKTAGYDRPTPVQKYSIPALQSGRDLMSCAQTGSGKTAAFLVPLVNS 288

Query: 63  LEK-------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIG 108
           + +             G  + + P  L+L PTREL+ Q+ +   K+     +T A L  G
Sbjct: 289 ILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIYNESRKFAYRTPITSALLYGG 348

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
              ++ Q  KL  G  +LI TPGR++D  ++G + +     LV+DEADRMLDMGF P I+
Sbjct: 349 RENYKDQIHKLRLGCHILIATPGRLIDVMDQGLIGLEGCRYLVLDEADRMLDMGFEPQIR 408

Query: 169 NITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
            I        +      +FSAT   E+Q ++++FL+            +        +  
Sbjct: 409 QIVEFNRMPPKEERVTAMFSATFPKEIQLLAQDFLKPNYVFLAVGRVGSTSENIMQKIVW 468

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
             +  K+  L+   L +       ++F   K+   +L + L +Q + V  IHG++ Q  R
Sbjct: 469 VEEDEKRSYLMDL-LDATGDSSLTLVFVETKRGASDLAYYLSRQNYQVVTIHGDLKQFER 527

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            K L  F+ GT  ++VA+ +AARGLDIP+V HV N+D+P+  + Y+HRIGRTGR G  G 
Sbjct: 528 EKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGL 587

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           A +    ++      +  LI +    L   L  ++
Sbjct: 588 ATSFFNDKNRNIARELMDLIVEANQELPDWLEGMS 622


>gi|259418826|ref|ZP_05742743.1| putative ATP-dependent RNA helicase RhlE [Silicibacter sp.
           TrichCH4B]
 gi|259345048|gb|EEW56902.1| putative ATP-dependent RNA helicase RhlE [Silicibacter sp.
           TrichCH4B]
          Length = 442

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 140/386 (36%), Positives = 219/386 (56%), Gaps = 6/386 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ + L   +   +   G+  PTPIQ + IP  L   DV G+AQTGTGKTA+F +P++ 
Sbjct: 3   EFSTMDLPKHLHTRMEAMGFNTPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLVA 62

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            + +   +         IL PTRELA Q+A+      +   L   L++GG+    Q  +L
Sbjct: 63  QMLEYGQKPAAGTVRGLILAPTRELANQIAETLRGLTEGSPLKTGLVVGGVSINPQINRL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG D+L+ TPGR+LD  +R  L + + + LV+DEAD+MLD+GFI  ++ I +L+P  RQ
Sbjct: 123 SRGTDILVATPGRLLDILDRKALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEKRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM  ++ +++  +L++P RI     +   +       + +     +   L + L
Sbjct: 183 TMLFSATMPKQMNEIANAYLKSPVRI---EVTPPGKPATKVTQSVHFIAKAEKLSLLKEL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  ++F   K  +  L   L+K GF   AIHGN  Q  R + L  FK G I ++
Sbjct: 240 LAKHDGERTLVFGRTKHGMEKLMKVLDKAGFKAAAIHGNKSQGQRERALKAFKSGEITVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIPDV +V+N+++PN  + Y+HRIGRT RAG+ G+A    A ++I  + A
Sbjct: 300 VATDVAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEIGDLKA 359

Query: 360 IEKLIEKKVDWLNGD-LSSLNPPLEK 384
           I+K +   +   +G     L  P  K
Sbjct: 360 IQKTMGITIPVASGRAWEELPDPAAK 385


>gi|147770303|emb|CAN60235.1| hypothetical protein VITISV_028850 [Vitis vinifera]
          Length = 666

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 125/375 (33%), Positives = 212/375 (56%), Gaps = 6/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++ + LG++ ++V A+ + G  K  PIQ   +   +Q  D+ G A+TGTGKT +F +P++
Sbjct: 115 LEISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIM 174

Query: 61  T---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                      R R P  L+L PTRELA QV   F +   N +       GG P   Q  
Sbjct: 175 DKVIQYNAKHGRGRNPLALVLAPTRELARQVEKEFXESAPNLDTLCV--YGGTPISRQMN 232

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G DV++ TPGRI+D   RG L ++ ++ +V+DEAD+ML +GF   ++ I   +P  
Sbjct: 233 SLDYGVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQN 292

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ+++FSATM   ++K+++ +L+NP  I++   S           +  ++  +K +++  
Sbjct: 293 RQSMMFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGP 352

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+         I+F   K++   L +++ +      A+HG+I Q  R + LS F++G   
Sbjct: 353 LITEHAKGGKCIVFTQTKRDADRLAYAMARNFR-CEALHGDISQSQRERTLSGFRDGHFN 411

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDIP+V  + ++++PN +E ++HR GRTGRAG+ G A  + A++  + +
Sbjct: 412 VLVATDVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTV 471

Query: 358 DAIEKLIEKKVDWLN 372
             IE+ I  K   L 
Sbjct: 472 RFIERDIGCKFSELP 486


>gi|47121785|gb|AAT11555.1| vasa-like protein [Copidosoma floridanum]
 gi|47175561|gb|AAT12450.1| vasa protein [Copidosoma floridanum]
          Length = 708

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 136/390 (34%), Positives = 202/390 (51%), Gaps = 14/390 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  L   +V  +  +GY  PTPIQ   IP+VL   D+ G AQTG+GKTA+F++P++ 
Sbjct: 281 SFDEANLRSLLVDNIKKSGYQIPTPIQKHGIPIVLAGRDLMGCAQTGSGKTAAFLIPIIH 340

Query: 62  I--------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                     + G      PR LIL PTRELA Q+ D   K+ K+  L   L+ GG    
Sbjct: 341 NLLLKPREINDMGSLSTVEPRALILAPTRELAIQIHDECRKFSKDSVLKCCLIYGGTAVG 400

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q K++  G D+L+ TPGR+ D   RGK++ + IE LV+DEADRM+DMGFI  ++ +   
Sbjct: 401 HQLKQIFYGCDLLVATPGRLKDFVGRGKVVFSAIEYLVLDEADRMIDMGFIGDVEMVIRH 460

Query: 174 VPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
              T        +FSAT   ++Q+++  FL N   + V    S    IE  F+       
Sbjct: 461 ETMTPPGERQTLMFSATFPRDIQELAVKFLNNYIFVAVGIVGSACSDIEQSFLEVKKSDK 520

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKIL 288
           +         +  +    GI+    +K   +   +      F   +IHG+  QR R + L
Sbjct: 521 RSKLKEILEEERNNDTLKGILVFVDQKRTADFIAAFLSDNNFPTTSIHGDRLQREREEAL 580

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           ++FK G + ++VA+ +AARGLDI +V  V NFD+P   + YIHRIGRTGR G  GKA + 
Sbjct: 581 NDFKSGRMCILVATAVAARGLDIKNVRFVINFDLPKEIDEYIHRIGRTGRVGNKGKAVSF 640

Query: 349 VAKE-DIKHIDAIEKLIEKKVDWLNGDLSS 377
             +  D +    + K++E     +   L+S
Sbjct: 641 YDESIDNRIQPDLVKILEMANQPIPEWLAS 670


>gi|254787708|ref|YP_003075137.1| DEAD/DEAH box helicase [Teredinibacter turnerae T7901]
 gi|237686799|gb|ACR14063.1| DEAD/DEAH box helicase [Teredinibacter turnerae T7901]
          Length = 426

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 142/373 (38%), Positives = 215/373 (57%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F+ L LS +V  A+ D G+   +PIQ K++P  L  HDV G AQTGTGKTA+F++ +   
Sbjct: 43  FSTLDLSSQVARALADMGFEHCSPIQAKSLPYSLSGHDVLGKAQTGTGKTAAFLIAVFED 102

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                         PR L++ PTREL  Q+A +    GK   L+V  L+GG+ F  Q + 
Sbjct: 103 LLRQPAPEERFAGEPRALVIAPTRELVMQIAKDAAAIGKYAGLSVQTLVGGMDFNKQMQA 162

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN--ITSLVP 175
              +  D+L+ TPGR+LD   R ++ ++ +EILVIDEADRMLDMGFIP ++     +   
Sbjct: 163 LHGQFVDILVATPGRLLDFCERREVYLDQLEILVIDEADRMLDMGFIPQVKRIVRLAPRK 222

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT +D++ +++E+++  P  +E+   +   +++E                 
Sbjct: 223 THRQTLLFSATFSDDVLRLAESWMFEPVSVEIEPETVATDSVEQFIYMVSGDEKLPLLCN 282

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                S   +KN +IF N++     L   L KQG+ V  + G I Q  R+K L  FKEG+
Sbjct: 283 L---ISMPDVKNVMIFANRRDQCRTLYERLRKQGYKVGLLSGEIPQGKRVKTLEAFKEGS 339

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q +VA+D+A RG+ I  V HV N+ +P   E+Y+HRIGRTGRAG  G++ +   ++D  
Sbjct: 340 LQALVATDVAGRGIHIDGVSHVVNYTLPEEPEDYVHRIGRTGRAGNTGQSISFACEDDAF 399

Query: 356 HIDAIEKLIEKKV 368
            + AIE+L+ +K+
Sbjct: 400 RLPAIEELLGRKL 412


>gi|171693513|ref|XP_001911681.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946705|emb|CAP73508.1| unnamed protein product [Podospora anserina S mat+]
          Length = 694

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 133/397 (33%), Positives = 206/397 (51%), Gaps = 22/397 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L
Sbjct: 194 LTFSHPPLDKHLLSNIELARYKIPTPVQKYSIPIVIGGRDLMACAQTGSGKTGGFLFPIL 253

Query: 61  TILEKG---------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105
                                R R   P  LIL PTREL +Q+ D   K+     +   +
Sbjct: 254 HQSFVQGPSPIPAQGGGGGGYRQRKAYPTALILAPTRELVSQIYDESRKFAYRSWVRPCV 313

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P
Sbjct: 314 VYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEP 373

Query: 166 YIQNITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
            I+ I           RQTL+FSAT   ++Q ++++FL +   + V    ST+E I    
Sbjct: 374 QIRRIVQGEDMPLTGQRQTLMFSATFPRDIQMLAQDFLNDYVFLSVGRVGSTSENITQKV 433

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
                   +        +         +IF   K+   +L   L  Q F   +IHG+  Q
Sbjct: 434 EYVEDVDKRSV---LLDILHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQ 490

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG 
Sbjct: 491 RERERALELFRNGKCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGN 550

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            G A     + +   +  + +L+++    + G L ++
Sbjct: 551 TGIATAFFNRGNRGVVRELLELLKEANQEVPGFLETI 587


>gi|156084736|ref|XP_001609851.1| DEAD box RNA helicase [Babesia bovis T2Bo]
 gi|154797103|gb|EDO06283.1| DEAD box RNA helicase, putative [Babesia bovis]
          Length = 714

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 113/401 (28%), Positives = 184/401 (45%), Gaps = 25/401 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A+  L  +++ A+ DAG+  PTPIQ++ IP+ L   D+ G+A+TG+GKT +FVLPMLT
Sbjct: 298 TWAESNLPSELLRAIKDAGFKSPTPIQMQAIPIGLGMRDLIGLAETGSGKTVAFVLPMLT 357

Query: 62  ILE-----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            ++             P  L L PTRELA Q+     K+    +    L++GG   + Q 
Sbjct: 358 YVKALPPLNEDTLQDGPYALTLAPTRELATQIHAETVKFSAFCSCRTVLVVGGHSVDQQG 417

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  GA+++I TPGRI D  +R   ++     +++DEADRM+DMGF   + +I   +P 
Sbjct: 418 FELRNGAEIVIGTPGRIKDCLDRSYTVLTQCNYVILDEADRMIDMGFEEIVNDILDCIPT 477

Query: 177 T--------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
           +                     +    +   +  +    E   +   R  V        +
Sbjct: 478 SNLKDLDENLALQQELSTKAGYRKYRITQMFSATMPAAVEKLTKKYLRSPVIVSIGDVGS 537

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
            +      +   ++     +            I+F N KK    +   +        ++H
Sbjct: 538 GKKSITQRFEFITEHRKKQKLQDLLHTLEGQIIVFVNMKKVADVVARHISNMNLRAISLH 597

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G   Q  R   L +FK G   ++VA+D+  RGLD+  V  V NFD+P   E Y HRIGRT
Sbjct: 598 GGKTQDIREGALESFKAGDFDILVATDVVGRGLDVKGVTAVINFDMPKDIETYTHRIGRT 657

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
           GRAG  G A + V ++D      +++ +    + +  +L  
Sbjct: 658 GRAGAKGMAISFVTEDDSHLFYDLKQQLISTGNDIPPELEK 698


>gi|72160918|ref|YP_288575.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Thermobifida fusca YX]
 gi|71914650|gb|AAZ54552.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Thermobifida fusca YX]
          Length = 503

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 133/364 (36%), Positives = 209/364 (57%), Gaps = 1/364 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +  A+   G V P PIQ   +PL L   D+ G A+TGTGKT +F LP+L 
Sbjct: 19  TFRDLGVIDDIADALEAEGIVAPFPIQSMALPLALTGADIIGQARTGTGKTFAFGLPLLQ 78

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +       + PR L++ PTRELA QVA +     K  ++ +A + GG  +E Q   L +
Sbjct: 79  RVHTQPGSAKRPRALVVVPTRELAIQVAADLATASKRIDVRIATVYGGRAYEPQISALRK 138

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR+LD   +  L+++ +  LV+DEAD+MLD+GF+P I+ I +  P  RQT+
Sbjct: 139 GVDIVVGTPGRLLDLVKQRHLILSEVTALVLDEADKMLDLGFLPDIERILAKTPDQRQTM 198

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+  +S  +L+ P  I          + +            K  +L +LLQ+
Sbjct: 199 LFSATMPSEIVALSRKYLRRPTHIRAEDDPLDTGSGQVTQHVFRTHPLDKLEMLARLLQA 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++     ++FC  K+   ++   L ++GF+  A+HG++ Q  R + L  F+ G + ++VA
Sbjct: 259 RNRG-LTMVFCQTKRECHHVSTELCRRGFAAAAVHGDLGQGQRERALRAFRNGKVDVLVA 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV HV N++ P+  + Y HRIGRTGRAGR G A T +  +++     I 
Sbjct: 318 TDVAARGIDVDDVTHVVNYECPDDEKTYTHRIGRTGRAGRSGTAVTFIDWQELLRWKLIN 377

Query: 362 KLIE 365
           + + 
Sbjct: 378 RALG 381


>gi|302697571|ref|XP_003038464.1| hypothetical protein SCHCODRAFT_46575 [Schizophyllum commune H4-8]
 gi|300112161|gb|EFJ03562.1| hypothetical protein SCHCODRAFT_46575 [Schizophyllum commune H4-8]
          Length = 528

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 116/391 (29%), Positives = 197/391 (50%), Gaps = 11/391 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LS   +  + D G+   TP+Q K+IP++L   DV G A+TG+GKT +F++P + +
Sbjct: 15  FSTLELSEPTMRGLTDMGFSTMTPVQAKSIPVLLAGKDVLGAARTGSGKTLAFLIPAIEM 74

Query: 63  LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + + +       +I+ PTRELA Q+    +    +++ T  +++GG    A+ +KL++
Sbjct: 75  LHRLKFKPMNGTGIIIITPTRELALQIFGVAKDLMAHHSQTYGIVMGGANRRAEMEKLQK 134

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGF-IPYIQNITSLVPFTRQ 179
           G ++LI TPGR +    N    +  N++ LVIDEADR+L++GF     + I+ L    RQ
Sbjct: 135 GVNLLIATPGRLLDHLQNSKGFVFRNLKALVIDEADRILEVGFEEEMKRIISILPNENRQ 194

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           ++LFSAT T ++Q ++   L+               T+           S +  LL    
Sbjct: 195 SMLFSATQTTKVQDLARISLRPGPVSIDVDKEEATSTVSTLSQGYVVCPSDRRFLLLFTF 254

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   K  I+F +   +V      L      V  +HG   Q+ R      F      ++
Sbjct: 255 LKKHLKKKIIVFFSSCNSVKYHAELLNYIDTPVLDLHGKQKQQKRTNTFFEFINAESGIL 314

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+AARGLDIP V  +  +D P+   +YIHR+GRT RAG+ GK+   +   ++  +  
Sbjct: 315 LCTDVAARGLDIPRVDWIIQYDPPDDPRDYIHRVGRTARAGKVGKSLLFLLPSELGFLRF 374

Query: 360 IEKLIEKKVDWLNG-----DLSSLNPPLEKI 385
           ++   E KV           ++++   LEK+
Sbjct: 375 LK---ESKVPLNEYSFPANKIANVQSQLEKL 402


>gi|195999078|ref|XP_002109407.1| conserved hypothetical protein [Trichoplax adhaerens]
 gi|190587531|gb|EDV27573.1| conserved hypothetical protein [Trichoplax adhaerens]
          Length = 425

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 97/371 (26%), Positives = 162/371 (43%), Gaps = 3/371 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 45  FRDFLLKPELLRAIVDCGFEHPSAVQHECIPQAILGMDVICQAKSGMGKTAVFVLATLQQ 104

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     V +             ++  D F KY  N  + V      I  +    K    
Sbjct: 105 LDPVDNEVSVLVLCHTRELAFQISKEYDRFSKYMDNVKVAVFFGGINIKKDQATLKSSCP 164

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +     +   L N    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 165 HIVVGTPGRMLALVREKSLNLKNCKHFILDECDKMLEQLDMRRDVQEIFRMTPHQKQVMM 224

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  + V+  +                + K   L        
Sbjct: 225 FSATLSKEIRPVCKKFMQDPMEVYVDDDTKLTLHGLRQHYVKLKDHEKNRKLFDL--LDI 282

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF    +  V L   L +Q F   +IH  + Q  R+K    FK    +++VA+
Sbjct: 283 LEFNQVIIFVKSVQRCVALTQLLVEQNFPAISIHRGMSQEDRLKHYGEFKNFNKRILVAT 342

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V ++ED K ++ ++
Sbjct: 343 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSSQEDAKILNEVQ 402

Query: 362 KLIEKKVDWLN 372
              E  V  L 
Sbjct: 403 DRFEVSVGELP 413


>gi|326477553|gb|EGE01563.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Trichophyton
           equinum CBS 127.97]
          Length = 812

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 124/433 (28%), Positives = 204/433 (47%), Gaps = 37/433 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +++ GL  +++  +   GY  P+PIQ  +IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 370 SWSESGLPKRLLEIIDSVGYKDPSPIQRVSIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 429

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                    E    R   P  +IL PTRELA Q+     K+    N  V  ++GG   E 
Sbjct: 430 YISSLPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEE 489

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 490 QAYNLRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 549

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ------- 227
           P + +          +            ++  + T +  +                    
Sbjct: 550 PVSNEKPDTEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 609

Query: 228 -----------------YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
                              K+   L ++L S++     I+F N K+N   +   ++  GF
Sbjct: 610 IGEAVDTVEQRVEFVAGEDKRKKRLAEILTSREYRPPIIVFVNIKRNCDAVARDIKHMGF 669

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++    E+Y 
Sbjct: 670 SAVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYT 729

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ 
Sbjct: 730 HRIGRTGRAGKSGVAITFLGNEDNDVLYDLKQML------MKSSISRVPEELRKHEAAQS 783

Query: 391 NHARKNNPIPQKS 403
              R      QK 
Sbjct: 784 KPIRGMGAAGQKK 796


>gi|324503749|gb|ADY41623.1| ATP-dependent RNA helicase DDX54 [Ascaris suum]
          Length = 799

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 126/447 (28%), Positives = 229/447 (51%), Gaps = 10/447 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +  LGL   V  A+   GY +PTPIQ K IPL++   DV  +++TG+GKTA+FV+PM  +
Sbjct: 40  WQALGLDHAVFKAIEKKGYRQPTPIQRKAIPLIIDGKDVVAMSRTGSGKTAAFVVPM--L 97

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +  R  V   R L++ PTRELA Q     ++ G+   L  A L+GG   E Q   +   
Sbjct: 98  QKLKRREVNGTRALLIAPTRELALQTFKFTKELGRFTGLRCAALVGGDSIEEQFGAIHEK 157

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR+L       L +  ++ LV DEADR+ +MGF   +  I   +P  RQTLL
Sbjct: 158 PDIIIATPGRLLHLIIEMNLRLTTVQYLVFDEADRLFEMGFSEQLHEILKRLPDNRQTLL 217

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L   ++  L +P  + ++     ++ +      T     K  A L  +  + 
Sbjct: 218 FSATLPKMLVDFAKAGLTDPVLVRLDVDEKISDRLSM-IFLTCRTADKISAFLYLVRLAI 276

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+FC   K+V  L    ++       ++  +D  +R   +  F+     L++ +
Sbjct: 277 ANNEMTIVFCATMKHVEYLAAVAQRAAIDCVVLYSQLDAAARKINIERFRSKQCLLLIVT 336

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP + +  NF  P +A+ ++HR+GR  RAG+ GK+++L++ +++ ++  +  
Sbjct: 337 DVAARGVDIPLLDNAINFHFPPKAKLFVHRVGRVARAGKSGKSYSLISADELPYLADLFL 396

Query: 363 LIEKKVDWLNGD-LSSLNPPL-----EKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            + + +++   D +   + PL     + +   + +  R  +   ++     ++ +N  S+
Sbjct: 397 FLGRPLNFAKPDSIYREDEPLVGVFTDDLVELESDFLRAIHDNCEEMADLRKKSENAMSK 456

Query: 417 KSHI-PLKESEKISKLQQDIQENDADS 442
            S   P   +E + + + +++E  A +
Sbjct: 457 YSRTRPQPSAESVRRTKTELREAFAAA 483


>gi|162459683|ref|NP_001105241.1| DEAD box RNA helicase1 [Zea mays]
 gi|39653663|gb|AAR29370.1| DEAD box RNA helicase [Zea mays]
          Length = 566

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 136/373 (36%), Positives = 203/373 (54%), Gaps = 5/373 (1%)

Query: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--MLTILEKG 66
           P+++ A    +G+V+PTPIQ +  P +L+  D+ GIAQTG+GKT S++LP  +    +  
Sbjct: 159 PRLLHASYCQSGFVEPTPIQSQGWP-MLKGRDLIGIAQTGSGKTLSYLLPGLVHVGAQPR 217

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
             +   P  LIL PTRELA Q+ +   K+G         + GG P   Q + L RG +++
Sbjct: 218 LEQGDGPIVLILAPTRELAVQIQEESTKFGSYSRTRSTCVYGGAPKGPQIRDLRRGVEIV 277

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR++D    G   +  +  LV+DEADRMLDMGF P I+ I + +   RQTL +SAT
Sbjct: 278 IATPGRLIDMLEAGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSAT 337

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
              E++ ++  FLQNP ++ + +P   A       V   + +        +LL       
Sbjct: 338 WPREVEALARQFLQNPYKVIIGSPELKANHSIQQIVEVISDHE-SIQDSVKLLSDLMDGS 396

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             +IF   KK+   +   L   G+   +IHG+  Q  R  +L+ FK G   +M A+D+AA
Sbjct: 397 RILIFLQTKKDCDKITRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDVAA 456

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLD+ D+  V N+D P   E+YIHRIGRTGRAG  G AFT     + K    + K++ +
Sbjct: 457 RGLDVKDIKCVINYDFPTTLEDYIHRIGRTGRAGASGTAFTFFTHANAKFSRNLVKILRE 516

Query: 367 KVDWLNGDLSSLN 379
               +N  L S++
Sbjct: 517 AGQVVNPALESMS 529


>gi|258566652|ref|XP_002584070.1| ATP-dependent RNA helicase ded1 [Uncinocarpus reesii 1704]
 gi|237905516|gb|EEP79917.1| ATP-dependent RNA helicase ded1 [Uncinocarpus reesii 1704]
          Length = 670

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 131/397 (32%), Positives = 204/397 (51%), Gaps = 23/397 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+  
Sbjct: 181 TFTNPPLDDHLISNIKLASYKTPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILS 240

Query: 60  --------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105
                               GR R   P +LIL PTREL +Q+ D   K+     +   +
Sbjct: 241 QAFKNGPSAVPTQNANQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCV 300

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P
Sbjct: 301 VYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEP 360

Query: 166 YIQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
            I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I    
Sbjct: 361 QIRRIVEGEDMPPVNGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKV 420

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
                   +        +         +IF   K+   +L   L  Q F   AIHG+  Q
Sbjct: 421 EYVEDNDKRSV---LLDILHTHGTGLTLIFVETKRMADSLSEFLINQNFPATAIHGDRTQ 477

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R R + L  F+     ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG 
Sbjct: 478 RERERALEYFRNARCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGN 537

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            G +     + +   +  + +L+++    +   L ++
Sbjct: 538 TGLSTAFFNRGNRGVVRDLIELLKEAHQEVPAFLENI 574


>gi|313896720|ref|ZP_07830268.1| DEAD-box ATP-dependent RNA helicase CshA [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312974637|gb|EFR40104.1| DEAD-box ATP-dependent RNA helicase CshA [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 423

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 138/419 (32%), Positives = 221/419 (52%), Gaps = 25/419 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA++G+S  +   + + G   PTP+Q + +P +    DV   AQTGTGKT +F+LP+L
Sbjct: 2   MPFAEIGVSEALCTLLKNRGISVPTPVQERAVPAMRVGRDVIAQAQTGTGKTLAFLLPVL 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++   A V+    L++ PTRELA Q+A   E      ++   L+ GG   E Q +KL 
Sbjct: 62  EKIKPQGAVVQA---LVIAPTRELAIQIARVAEPLAAALSIGTTLVYGGADIERQKEKLR 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++I TPGR+LDH  RG L + ++  +V+DEAD ML +GFI  ++ +        Q 
Sbjct: 119 RHPQLVIGTPGRLLDHVRRGTLALGSVNKVVLDEADEMLKLGFIEDVETLLGHTAQDYQL 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM + + ++++ F+ NP RI++    +T E IE       +   ++         
Sbjct: 179 ALFSATMPERIVQLTKRFMHNPARIKIEGEHTTLENIEQ---IALSVNEEEKLDRLCASI 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +++     ++FC  K+    L  +L  +G+ V A+ GN+ Q  R  +L  F+   +Q++ 
Sbjct: 236 NEEAPYLAMVFCATKERTHALMMALAGRGYLVDALSGNLTQTQRAFVLRQFRAAKLQILC 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV+N+D+P    +YIHRIGRTGRAG  G+A TLV     + +  I
Sbjct: 296 ATDIAARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGARGRAITLVTARQHEKLRKI 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           E  +++++                   A+    +K  P PQK+      ++   S    
Sbjct: 356 EAALKERL-------------------ARAAVKKKPRPAPQKAQPDKEGRRVVQSHPPR 395


>gi|254557077|ref|YP_003063494.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
 gi|254046004|gb|ACT62797.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
          Length = 447

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 129/453 (28%), Positives = 203/453 (44%), Gaps = 26/453 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L P ++ A+ D  + KPT +Q K IP++     V G + TG+GKT +F+LPM+ 
Sbjct: 4   SFEDFKLQPFLMQALTDINFRKPTAVQEKLIPVIAAGRSVIGQSATGSGKTHTFLLPMIN 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L      V+   T             A    ++          + G    E   K    
Sbjct: 64  QLNADERYVQAVITTPSRELAYQIQTAAKQLIQHSPKAIHIGLYVGGTDKQEQIEKLNRH 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD      L ++    LV+DEAD  LD+GF+  +  I   +P   Q L
Sbjct: 124 QPQLIIGTPGRILDLMRSQALDVHRATQLVVDEADMTLDLGFLNVVDQIAGRMPADLQML 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  +L      ++ NP   E+   S  + TI++  ++T +              +
Sbjct: 184 VFSATMPQKLTPFLRKYMNNPVMEEIPVESVISPTIDNWLISTKSHDKNSIIYRLL---T 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  +IF N K+ V  L H L +QG +V  IHG+I  R R +++ + ++   Q +VA
Sbjct: 241 IGEPYLVLIFANTKERVQELTHYLRQQGLTVAMIHGDIQPRERKRVMRDVQQLKYQFVVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+DI  V HV N D+PN  E +IHR+GRTGR G  G A TL +  +   + A+E
Sbjct: 301 TDLAARGIDIEGVSHVINDDIPNDLEFFIHRVGRTGRNGMAGTAITLYSPGEEAKVSAVE 360

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK----------------STG 405
            +    + +    +       E +D    N   K  P  +K                  G
Sbjct: 361 AM---GIKFKPKAIRDG----EIVDSYDRNRRAKRGPKQEKLDPTLIGYVKKSKKKIKPG 413

Query: 406 FDRRKKNYSSQKSHIPLKESEKISKLQQDIQEN 438
           + RR +   S K+ +  +  ++ +  ++     
Sbjct: 414 YKRRIRKKISDKARMDRRIEQRAAARKERKDRK 446


>gi|302525261|ref|ZP_07277603.1| ATP-dependent RNA helicase [Streptomyces sp. AA4]
 gi|302434156|gb|EFL05972.1| ATP-dependent RNA helicase [Streptomyces sp. AA4]
          Length = 613

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 131/359 (36%), Positives = 194/359 (54%), Gaps = 5/359 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL   ++ A+ +AG   P PIQ  TIP  L   DV G AQTG+GKT +F L +L 
Sbjct: 82  TFAQLGLPEPLLRALAEAGIDAPFPIQSATIPDALAGRDVLGRAQTGSGKTLAFGLAILA 141

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G+AR + PR L+L PTRELA QVAD+     K+  L     +GG+ F  Q + L R
Sbjct: 142 RLDGGKARPKRPRALVLVPTRELAMQVADSLTPLAKSLGLWCRTAVGGMSFGRQAESLAR 201

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+LI TPGR+ DH  +G   + +   + +DEAD+M DMGF+P ++ I  L P   Q L
Sbjct: 202 GVDLLIATPGRLSDHVRQGTASLGDCNFIALDEADQMADMGFMPQVREIMDLTPPGGQRL 261

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ K+   +L +P    V   +++  T++H          +           
Sbjct: 262 LFSATLDGDVDKLVRQYLADPVTHSVAPSTASVTTMDHHLFQVSHSDKQDIITRI----- 316

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K +V  L   L + G    A+HG   Q  R ++L++FKEG   ++VA
Sbjct: 317 GAREGRTIMFVRTKHHVDRLTERLRESGVHAVALHGGKTQGQRNRVLADFKEGHAAVLVA 376

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +D+AARG+ + ++  V + D     ++Y+HR GRT RAG  G   TLV  +  + +  +
Sbjct: 377 TDVAARGIHVDNISLVLHVDPAADHKDYLHRAGRTARAGASGIVVTLVTHDQRRTVRRM 435


>gi|310791038|gb|EFQ26567.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 433

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 162/375 (43%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q   IP  L   D+   A++G GKTA FVL  L  
Sbjct: 51  FRDFLLKPELLRAIGDCGFEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLTTLQQ 110

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +E  +  V +       E   ++  +     +                       K  E 
Sbjct: 111 VEPVQGEVSVLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDVETIKNKET 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+        L + ++ I V+DE D+M   +     +Q I    P  +Q 
Sbjct: 171 CPHIIVGTPGRLNALVRDKVLRLGSVRIFVLDECDKMLDQIDMRRDVQEIFRATPTQKQV 230

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++DE++ +   F+QNP    V+  +         +     +  K   L +    
Sbjct: 231 MMFSATLSDEIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIKLEEREKNRKLNEL--L 288

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF         L   L +  F   A+H  + Q  R++    FKE   ++ V
Sbjct: 289 DDLQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICV 348

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           A+D+  RG+DI  +    N+D+P  A++Y+HR+GR GR G  G A + V   +D + + +
Sbjct: 349 ATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVSTDQDQEVLKS 408

Query: 360 IEKLIEKKVDWLNGD 374
           IEK  E  +     +
Sbjct: 409 IEKRFEVALPEFPKE 423


>gi|295104399|emb|CBL01943.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
           SL3/3]
          Length = 395

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 117/366 (31%), Positives = 199/366 (54%), Gaps = 7/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M +++L  S  +  AV   G+ + T IQ KTIPL+L  HDV   A TGTGKT +F +P++
Sbjct: 1   MLYSELQCSEAIHKAVERMGFAEMTEIQEKTIPLMLAGHDVIAKAPTGTGKTCAFGIPVV 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             ++      + P+ +I+ PTRELA Q+A+                +  G   E Q K+L
Sbjct: 61  EHIQP---ENKYPQAVIMAPTRELAQQIAEELTNLTYFMPEVQVACVYGGANMEKQAKRL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  +++ TPGR++DH+    + ++++  +V+DEAD ML+MGF   +++I  ++   + 
Sbjct: 118 AEGCQIVVATPGRLMDHYKHHSIDISHVTQIVLDEADEMLNMGFYKDVRHIIEMMKARKA 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +FSAT++ E+  +   +  N + I   T     E+             +        +
Sbjct: 178 LSMFSATISREVMDIGWLYQHNAEEI---TVQPREESQPKITQYMLETSGRNKLSDLAQI 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  K  ++FC+ K N   L + L + GFSV  +HG++ Q+ R +I+  F++G + ++
Sbjct: 235 IIGEGYKRVMVFCDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQAFRDGKLAIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  V N+DVP+  E+Y HRIGRTGRA + G ++     E+ K +  
Sbjct: 295 VATDVAARGIDVSDVDAVINYDVPSENEHYTHRIGRTGRAKKEGVSYLFYVPEEKKRVQE 354

Query: 360 IEKLIE 365
           + +L  
Sbjct: 355 LLRLTR 360


>gi|145588844|ref|YP_001155441.1| DEAD/DEAH box helicase domain-containing protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047250|gb|ABP33877.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 500

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 119/373 (31%), Positives = 199/373 (53%), Gaps = 8/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L+  ++  V + G+ + T +Q + IP  L   D+   +QTG+GKTA+F+LP++ 
Sbjct: 20  EFQNFALAASLLKNVAELGFTQATSVQAQVIPAALAGGDLLVSSQTGSGKTAAFLLPLIN 79

Query: 62  ILEKGRARVR------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            L +             P+ L+L PTRELA QVA +     +         + G     +
Sbjct: 80  QLIEDNPNNSPVPGRAQPKVLVLCPTRELAQQVAADAVNLVRGMKGIRIATVMGGMPYGK 139

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +  +GA +++ TPGR+LD  +   + +++++ LVIDEADRMLDMGF   ++ I     
Sbjct: 140 QIQALKGALLVVATPGRLLDLCDSKAIRLDDVKQLVIDEADRMLDMGFADDLEAIDKRCA 199

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              QTL+FSAT   ++  ++     + KRIE+         IE       +   K     
Sbjct: 200 GRNQTLMFSATFAPKIMSLANELTTDAKRIELAHAGEKHANIEQKLHWADSMSHKHKL-- 257

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            + + +  T+   ++F + +     +  +L   G+   A+HG + Q  RM+ L + ++G 
Sbjct: 258 LEHILADATLDQAVVFASTQVESEKIADTLRANGYEASALHGAMPQAVRMRRLESLRKGH 317

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            +++VA+D+AARG+D+P + HV NF +P + E+Y HRIGRTGRAGR+G A TLV   D  
Sbjct: 318 TKILVATDVAARGIDVPRISHVINFGLPMKPEDYTHRIGRTGRAGRNGVAITLVEHRDRA 377

Query: 356 HIDAIEKLIEKKV 368
            I  IE+  ++ +
Sbjct: 378 KIRNIERFTQQDI 390


>gi|317491008|ref|ZP_07949444.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920555|gb|EFV41878.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 442

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 147/437 (33%), Positives = 235/437 (53%), Gaps = 16/437 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKT +++LP + 
Sbjct: 5   NFSELELDERLLDALRDKGYDRPTAIQAAAIPPAMDGRDVLGSAPTGTGKTVAYLLPVLQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR L+L PTRELA QVA+   +  K+ NL +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRVLVLTPTRELAMQVAEQAIELAKHTNLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I +   + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT   D +++ SE  LQ+P  IE +      + I+  +        K   L    L
Sbjct: 185 MLFSATLEGDAIKEFSERLLQDPVEIEADPSRRERKKIQQWYYRADTLEHKTKLLC--HL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +  +   +IF  +++ V  L   L + G + C + G + Q  R + +    +G + ++
Sbjct: 243 LKEPEVTKSVIFVRKRERVHELVGWLREAGINSCYLEGEMVQAKRNEAMKRMLDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIPD+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDVAARGLDIPDISHVFNFDMPRTADTYLHRIGRTGRAGRKGIAISLVEAHDHLLLGK 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           I + +E+++   +  +  L P  +         + KN   P K T   R++K    +K  
Sbjct: 363 ISRYVEEQIK--SRVVDELRPTTKP-------PSEKNKGKPSKKTLLKRQEKKDEEKKDK 413

Query: 420 IPL---KESEKISKLQQ 433
                 ++S+ + K ++
Sbjct: 414 KVKVRHRDSKNVGKRRK 430


>gi|297842471|ref|XP_002889117.1| hypothetical protein ARALYDRAFT_316620 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334958|gb|EFH65376.1| hypothetical protein ARALYDRAFT_316620 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 834

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 136/415 (32%), Positives = 224/415 (53%), Gaps = 8/415 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P V  A+   GY  PTPIQ KT+PL+L   DV  +A+TG+GKTA+F++PML  
Sbjct: 30  FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++   +    R LIL PTR+LA Q     ++ GK  +L V+LL+GG   E Q ++L +G
Sbjct: 90  LKQHVPQGG-VRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKG 148

Query: 123 ADVLICTPGRILD-HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR++        + +  +E +V DEAD +  MGF   +  I + +   RQTL
Sbjct: 149 PDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTL 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L + ++  L+ P+ + ++  +  +  +   F  T     K  ALL  + + 
Sbjct: 209 LFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLRLSF-LTVRPEEKYAALLYLVREH 267

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  +IF + K +V  +    + +       +G++DQ +R   +S F+     L++ 
Sbjct: 268 ISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLLIV 327

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP + +V N+D P R + ++HR+GR  RAGR G A++ V  ED+ ++  + 
Sbjct: 328 TDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGSAYSFVTPEDVPYMLDLH 387

Query: 362 KLIEKKVDWLNGD---LSSLNPPLEKIDIAQHNHARKNNPIPQKSTG--FDRRKK 411
             + K V     +   L ++   + K   A  +        PQK+    F+R ++
Sbjct: 388 LFLSKPVRPAPTEDEVLKNMEEVMTKTSQAIDSGVTVYGRFPQKTIDLIFNRTRE 442


>gi|226437753|gb|ACO56244.1| putative DEAD-box RNA helicase [Caenorhabditis elegans]
          Length = 708

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 127/395 (32%), Positives = 202/395 (51%), Gaps = 19/395 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L   +   +  AGY +PTP+Q  +IP +    D+   AQTG+GKTA+F++P++  
Sbjct: 233 FSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPLVNA 292

Query: 63  LEK-------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIG 108
           + +             G  + + P  L+L PTREL+ Q+ +   K+     +T A L  G
Sbjct: 293 ILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIFNESRKFAYRTPITSALLYGG 352

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
              ++ Q  KL  G  +LI TPGR++D  ++G + M     LV+DEADRMLDMGF P I+
Sbjct: 353 RENYKDQIHKLRLGCHILIATPGRLIDVMDQGLIGMEGCRYLVLDEADRMLDMGFEPQIR 412

Query: 169 NITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
            I        +      +FSAT   E+Q ++++FL+            +        +  
Sbjct: 413 QIVECNRMPSKEERITAMFSATFPKEIQLLAQDFLKENYVFLAVGRVGSTSENIMQKIVW 472

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
             +  K+  L+   L +       ++F   K+   +L + L +Q + V  IHG++ Q  R
Sbjct: 473 VEEDEKRSYLMDL-LDATGDSSLTLVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQFER 531

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            K L  F+ GT  ++VA+ +AARGLDIP+V HV N+D+P+  + Y+HRIGRTGR G  G 
Sbjct: 532 EKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGL 591

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           A +    ++      +  LI +    L   L  ++
Sbjct: 592 ATSFFNDKNRNIARELMDLIVEANQELPDWLEGMS 626


>gi|71995718|ref|NP_497615.2| hypothetical protein Y71H2AM.19 [Caenorhabditis elegans]
 gi|66275464|gb|AAY43989.1| Hypothetical protein Y71H2AM.19 [Caenorhabditis elegans]
          Length = 643

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 127/395 (32%), Positives = 202/395 (51%), Gaps = 19/395 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L   +   +  AGY +PTP+Q  +IP +    D+   AQTG+GKTA+F++P++  
Sbjct: 168 FSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPLVNA 227

Query: 63  LEK-------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIG 108
           + +             G  + + P  L+L PTREL+ Q+ +   K+     +T A L  G
Sbjct: 228 ILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIFNESRKFAYRTPITSALLYGG 287

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
              ++ Q  KL  G  +LI TPGR++D  ++G + M     LV+DEADRMLDMGF P I+
Sbjct: 288 RENYKDQIHKLRLGCHILIATPGRLIDVMDQGLIGMEGCRYLVLDEADRMLDMGFEPQIR 347

Query: 169 NITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
            I        +      +FSAT   E+Q ++++FL+            +        +  
Sbjct: 348 QIVECNRMPSKEERITAMFSATFPKEIQLLAQDFLKENYVFLAVGRVGSTSENIMQKIVW 407

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
             +  K+  L+   L +       ++F   K+   +L + L +Q + V  IHG++ Q  R
Sbjct: 408 VEEDEKRSYLMDL-LDATGDSSLTLVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQFER 466

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            K L  F+ GT  ++VA+ +AARGLDIP+V HV N+D+P+  + Y+HRIGRTGR G  G 
Sbjct: 467 EKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGL 526

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           A +    ++      +  LI +    L   L  ++
Sbjct: 527 ATSFFNDKNRNIARELMDLIVEANQELPDWLEGMS 561


>gi|328771766|gb|EGF81805.1| hypothetical protein BATDEDRAFT_16042 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 584

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 138/418 (33%), Positives = 212/418 (50%), Gaps = 37/418 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            + +  LS  ++ A+   GY +PTPIQ + IP+ LQ  D+ GIA+TG+GKTASFV+PM  
Sbjct: 162 TWDECELSETILGAISRIGYKEPTPIQRQAIPMGLQNRDIIGIAETGSGKTASFVIPMLK 221

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                         + P  LIL PTRELA Q+     K+ +        ++GG   E Q 
Sbjct: 222 FITEMPPLTEINSSQGPYALILAPTRELAQQIESETSKFAREMGFICVSIVGGHAVEGQA 281

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP- 175
             L  GA ++I TPGR+ D   +  L+++    +V+DEADRM+DMGF P ++ I   +P 
Sbjct: 282 FNLRNGAHIVIATPGRLRDCLEQRILVLSQCTYVVMDEADRMVDMGFEPDLKFILDAMPV 341

Query: 176 ------------------------FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
                                     RQT++FSATM   ++++++ +L+ P  + +    
Sbjct: 342 SNIKPDSDESENVQLLRELTGKVTPFRQTVMFSATMPVAVERLAKAYLRRPATVTIGIAG 401

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
              + IE           K  + LQ++L S+      I+F NQKK    +  +L++ G  
Sbjct: 402 QVVDRIEQRVEMINDDGRK-LSRLQEILTSRQFEPPMIVFVNQKKGCEVIARALDRLGLK 460

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
              +HG   Q  R   L   K+GT  ++VA+D+A RG+D+ +V  V NFD+    E+Y H
Sbjct: 461 STTLHGGKSQEQREASLLGLKQGTKDILVATDVAGRGIDVKNVSVVINFDMAKSIEDYTH 520

Query: 332 RIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
           RIGRTGRAG+ G A T ++  D   +  + ++I      L   +S + P L K + AQ
Sbjct: 521 RIGRTGRAGKKGTAITFLSNYDTDVMYDLRQMI------LKSPISKVPPELSKHEAAQ 572


>gi|145256950|ref|XP_001401571.1| ATP-dependent RNA helicase ded1 [Aspergillus niger CBS 513.88]
 gi|134034089|sp|A2QI25|DED1_ASPNC RecName: Full=ATP-dependent RNA helicase ded1
 gi|134058481|emb|CAL00690.1| unnamed protein product [Aspergillus niger]
          Length = 678

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 136/396 (34%), Positives = 209/396 (52%), Gaps = 22/396 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 189 FTNPPLDDHLIENIKLAHYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 248

Query: 63  LE----------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                              GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 249 AYQNGPSAAPAQAGGQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVV 308

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ L++DEADRMLDMGF P 
Sbjct: 309 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQ 368

Query: 167 IQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 369 IRRIVEGEDMPHVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVE 428

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +       +L +  T    +IF   K+   +L   L  Q F   AIHG+  QR
Sbjct: 429 YVEDHDKRSVL--LDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQR 486

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 487 ERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 546

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A     + +   +  +  L+++    +   L S+
Sbjct: 547 GIATAFFNRGNRGVVRDLIDLLKEAHQEVPSFLESI 582


>gi|28378872|ref|NP_785764.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
 gi|300768022|ref|ZP_07077928.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|28271709|emb|CAD64615.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
 gi|300494371|gb|EFK29533.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 447

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 128/453 (28%), Positives = 203/453 (44%), Gaps = 26/453 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L P ++ A+ D  + KPT +Q K IP++     V G + TG+GKT +F+LPM+ 
Sbjct: 4   SFEDFKLQPFLMQALTDINFRKPTAVQEKLIPVIAAGRSVIGQSATGSGKTHTFLLPMIN 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L      V+   T             A    ++          + G    E   K    
Sbjct: 64  QLNADERYVQAVITTPSRELAYQIQTAAKQLIQHSPKAIHIGLYVGGTDKQEQIEKLNRH 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD      L ++    LV+DEAD  LD+GF+  +  I   +P   Q L
Sbjct: 124 QPQLIIGTPGRILDLMRSQALDVHRATQLVVDEADMTLDLGFLNVVDQIAGRMPADLQML 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  +L      ++ NP   E+   S  + TI++  ++T +              +
Sbjct: 184 VFSATMPQKLTPFLRKYMNNPVMEEIPVESVISPTIDNWLISTKSHDKNSIIYRLL---T 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F N K+ V  L H L +QG +V  IHG+I  R R +++ + ++   Q +VA
Sbjct: 241 IGEPYLVLVFANTKERVQELTHYLRQQGLTVAMIHGDIQPRERKRVMRDVQQLKYQFVVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+DI  V HV N D+PN  E +IHR+GRTGR G  G A TL +  +   + A+E
Sbjct: 301 TDLAARGIDIEGVSHVINDDIPNDLEFFIHRVGRTGRNGMAGTAITLYSPGEEAKVSAVE 360

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK----------------STG 405
            +    + +    +       E +D    N   K  P  +K                  G
Sbjct: 361 AM---GIKFKPKAIRDG----EIVDSYDRNRRAKRGPKQEKLDPTLIGYVKKSKKKIKPG 413

Query: 406 FDRRKKNYSSQKSHIPLKESEKISKLQQDIQEN 438
           + RR +   S K+ +  +  ++ +  ++     
Sbjct: 414 YKRRIRKKISDKARMDRRIEQRAAARKERKDRK 446


>gi|312085225|ref|XP_003144594.1| hypothetical protein LOAG_09017 [Loa loa]
 gi|307760242|gb|EFO19476.1| hypothetical protein LOAG_09017 [Loa loa]
          Length = 802

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 138/427 (32%), Positives = 214/427 (50%), Gaps = 28/427 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P +   +  +GY +PTP+Q  +IP ++   D+   AQTG+GKTA+F++P++  
Sbjct: 344 FADLKLHPWIEENIRLSGYGRPTPVQKYSIPTLMNNRDLMSCAQTGSGKTAAFLVPLINN 403

Query: 63  -------------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIG 108
                         ++   R + P  LIL PTREL+ Q+ +   K+     +T A L  G
Sbjct: 404 VLQAGPDALYKSTTQQNGRRRQYPAALILSPTRELSLQIYNESRKFAYRTPITSALLYGG 463

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
              +  Q  KL  G  +LI TPGR++D   +G + ++    LV+DEADRMLDMGF P I+
Sbjct: 464 RENYREQINKLRLGVHILIATPGRLIDVMEQGLIGLDGCRFLVLDEADRMLDMGFEPQIR 523

Query: 169 NI----TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
            I           R T +FSAT   E+Q ++++FL             +        +  
Sbjct: 524 QIVDLSKMPPKGQRVTAMFSATFPKEIQVLAQDFLMPNYVFLAVGRVGSTSENIMQKIVW 583

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
             ++ KK  L+  L   + +    ++F   K+   +L + L+K G++V AIHG++ Q  R
Sbjct: 584 VEEHEKKSFLMDLLDAGEPSA-LTLVFVETKRGASDLAYYLQKDGYNVVAIHGDLKQFDR 642

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            K L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P+  + Y+HRIGRTGR G  G 
Sbjct: 643 EKHLETFRSGVAPILVATAVAARGLDIPNVKHVINYDLPSDIDEYVHRIGRTGRVGNVGL 702

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           A +    ++      + +L+ +    L          LEKI      +  +       S 
Sbjct: 703 ATSFFNDKNRNIARDLAELVVEANQELP-------EWLEKISADAQRYGTRPGRTKGGSR 755

Query: 405 --GFDRR 409
             G D R
Sbjct: 756 FGGRDHR 762


>gi|302845088|ref|XP_002954083.1| hypothetical protein VOLCADRAFT_82651 [Volvox carteri f.
           nagariensis]
 gi|300260582|gb|EFJ44800.1| hypothetical protein VOLCADRAFT_82651 [Volvox carteri f.
           nagariensis]
          Length = 612

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 119/384 (30%), Positives = 178/384 (46%), Gaps = 8/384 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F +L L   ++  +    + KPTP+Q  +I + L   D+   AQTG+GKTA+F  P+  
Sbjct: 156 SFEELNLPQCMMDNIKRCKFTKPTPVQKHSITIGLAGRDLMACAQTGSGKTAAFCFPIIA 215

Query: 60  ------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                         +R  +P  L+L PTREL +Q+ D   K+     L   ++ GG P  
Sbjct: 216 SMLLKGYQPAAGRNSRKALPGALVLAPTRELTSQIYDEARKFTYMTGLRPVVIYGGAPAP 275

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + LERG D+L+ TPGR+ D   RG++ +++I  L +DEADRMLDMGF P I+ I   
Sbjct: 276 NQLRDLERGCDILVATPGRLSDFIERGRVGLSSILFLCLDEADRMLDMGFEPQIRRIVEQ 335

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
                     +   +    K  +    +     V        +     V      S    
Sbjct: 336 EDMPPVGQRQTLMFSATFPKEIQRLAADFLSNYVFLTVGRVGSSTDLIVQHIEYVSSDEK 395

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
               L          ++F   K+    L   L +      +IHG+  Q  R   L +FK 
Sbjct: 396 QNTLLDLISTVEGLTLVFVETKRGADELERILTRNQLPATSIHGDRSQEQREMALRSFKS 455

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +MVA+D+AARGLDIP V HV N+D+P   ++Y+HRIGRTGRAG  G A       D
Sbjct: 456 GKTPVMVATDVAARGLDIPHVTHVINYDLPKDIDDYVHRIGRTGRAGHKGLATAFFTDAD 515

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSS 377
                ++ +++ +    + G L +
Sbjct: 516 APLARSLVEVLTETNQAVPGWLQN 539


>gi|163789554|ref|ZP_02183992.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
 gi|159875086|gb|EDP69152.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
          Length = 483

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 209/367 (56%), Gaps = 5/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  +S ++V A+    Y  PT +Q + IPL L+  DV   +QTG+GKT S+ +P+  
Sbjct: 6   TFKEFAISDEIVTALTSLRYFHPTKVQEEVIPLALEGKDVIVESQTGSGKTVSYGVPLCE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +   P+ L+L PTRELA QV ++    G+   +    + G   F+ Q  +L++
Sbjct: 66  TVDWEENK---PQVLVLVPTRELAIQVKEDLMNIGRLKRVKATAVYGKASFDTQKSELKQ 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + +++ TPGR+LDH  +G   +  I+ LV+DEAD ML+MGF   ++ I + +P  RQTL
Sbjct: 123 KSHIVVGTPGRVLDHLQKGTFKVEKIDCLVLDEADEMLNMGFADQVEAIINFLPAERQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+++++  +++  K+  V   +  ++           +  K        L +
Sbjct: 183 LFSATMPKEIERIASFYMKQDKQSIVIETTELSKPKIIQSSVKVQEDKK--EQQLLDLLT 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + +IFCN ++ V NL   L K G  +  IHG + Q  R  ++ +F++G  + +VA
Sbjct: 241 VENADSCMIFCNTQEAVNNLYTFLNKAGLPIDKIHGGMVQEDRFSVMDDFRQGRFRYLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI +V HV NFDVP   E+++HR GRTGRAG+ G A TLV  ++ K  + ++
Sbjct: 301 TDVAARGIDIENVTHVVNFDVPVEKESFVHRTGRTGRAGKTGMALTLVTPKEEKWWNEVK 360

Query: 362 KLIEKKV 368
               + V
Sbjct: 361 AYAGQTV 367


>gi|315051548|ref|XP_003175148.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Arthroderma
           gypseum CBS 118893]
 gi|311340463|gb|EFQ99665.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Arthroderma
           gypseum CBS 118893]
          Length = 813

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 125/433 (28%), Positives = 204/433 (47%), Gaps = 37/433 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +++ GL  +++  +   GY  P+PIQ  +IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 371 SWSESGLPKRLLEIIDSVGYKDPSPIQRVSIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 430

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                    E    R   P  +IL PTRELA Q+     K+    N  V  ++GG   E 
Sbjct: 431 YISSLPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEE 490

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 491 QAYNLRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 550

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ------- 227
           P + +          +            ++  + T +  +                    
Sbjct: 551 PVSNEKPDTEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 610

Query: 228 -----------------YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
                              K+   L ++L S+D     I+F N K+N   +   ++  GF
Sbjct: 611 IGEAVDTVEQRVEFVAGEDKRKKRLAEILTSRDYRPPIIVFVNIKRNCDAVARDIKHMGF 670

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++    E+Y 
Sbjct: 671 SAVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYT 730

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ 
Sbjct: 731 HRIGRTGRAGKSGVAITFLGSEDNDVLYDLKQML------MKSSISRVPEELRKHEAAQS 784

Query: 391 NHARKNNPIPQKS 403
              R      QK 
Sbjct: 785 KPIRGMGAAGQKK 797


>gi|260663391|ref|ZP_05864282.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
 gi|260552243|gb|EEX25295.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
          Length = 460

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 123/452 (27%), Positives = 209/452 (46%), Gaps = 22/452 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L+  +  A+ D  + +PT +Q + IPL+L    V G ++TG+GKT +F+LP+ +
Sbjct: 4   SFADLHLADFLTPALKDLHFERPTAVQARVIPLILNGKSVVGQSRTGSGKTHAFLLPIFS 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L      V+   T             A    ++          + G        +   R
Sbjct: 64  QLAPNNQTVQAVITTPSRELAYQIYNAAKQLNRFATTPLTIHNYVGGTDKEHQVEQLNRR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD  N   L ++     VIDEAD  LDMGF+  +  I +  P   Q +
Sbjct: 124 QPQLVIGTPGRILDLINSQALDIHTASQFVIDEADMTLDMGFLETVDQIAARFPEKLQMM 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+   L+   + +L+NP   E+ T +     +E+  ++T  +             +
Sbjct: 184 VFSATIPQGLRPFLKKYLENPVIEEIPTETVINPNVENWLMSTKGRDKNDLVYRLL---T 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F N +     L + L+++G  V  IHG ++ R+R +++   ++   Q +VA
Sbjct: 241 LGDPYLALVFANTRDRATELANYLQERGLKVALIHGGLEPRARKRMMRQIRDMDYQYIVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+D+  V  V N D+P+  E +IHR+GRTGRA   G A TL A  +      IE
Sbjct: 301 TDLAARGIDLEGVSLVLNDDIPSDLEYFIHRVGRTGRANMAGTAITLYAPAEDVL---IE 357

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI-------------PQKSTGFDR 408
           KL E+ + ++  DL +    +   D  +    R+                  +   G+ R
Sbjct: 358 KLEERGITFIPKDLKNGRI-VTTYDRNRRKAHRRKKAALDPTVKGFVKKAKKKVKPGYKR 416

Query: 409 RKKNYSSQKSHIPLKESEK--ISKLQQDIQEN 438
           R K    +     +K++++  + K ++  Q+ 
Sbjct: 417 RIKQRIKEDERQKVKQAQRHEMRKAKRARQKQ 448


>gi|195166521|ref|XP_002024083.1| GL22752 [Drosophila persimilis]
 gi|194107438|gb|EDW29481.1| GL22752 [Drosophila persimilis]
          Length = 597

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 119/454 (26%), Positives = 200/454 (44%), Gaps = 29/454 (6%)

Query: 1   MDFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFV 56
           + F DL     L P++   VL  G+ +PTPIQ++ +P++ Q+  +   A TG+GKT +F+
Sbjct: 119 LSFDDLIRDYKLLPRLQQNVLSYGFSQPTPIQMQALPVLFQKRALMACAPTGSGKTLAFL 178

Query: 57  LPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFE 113
            P++  L     +    R L+L PTRELA Q+     +  +   L    +          
Sbjct: 179 TPIINGLRS--HKTTGLRALVLAPTRELAQQIYRECSELTRETGLRTHFISKVSEAKQKH 236

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN---- 169
               K +    +      R L       L +  +E  V+DEADR+++ G   + +     
Sbjct: 237 GAECKQKYDILISTPNRVRFLLQQQPPLLDLKGVEWFVLDEADRLMEEGQNNFKEQLDDI 296

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
             +     +    FSAT T  + K +   L+N  RI +   +S  +T++   +   ++  
Sbjct: 297 YAACSHPQKCVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATDTVQQELLFVGSESG 356

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K  A+  + L  Q      ++F   K     L   L   G +V  IH    Q  R   + 
Sbjct: 357 KLVAM--RNLVRQGLQPPVLVFVQSKDRAKQLFEELLYDGINVDVIHAERSQHQRDNCVR 414

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+EG I +++ ++L  RG+D   V  V N+D P    +YIHRIGRTGRAGR G+A T  
Sbjct: 415 AFREGNIWVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFF 474

Query: 350 AKEDIKHIDAIEKLIE-------------KKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
            ++D  ++ +I  +I+             KKV      + +   PLE+ DI+       +
Sbjct: 475 TQDDTANLRSIALIIKNSGGTVPEYMLQMKKVRKSEARIRA-KKPLEREDISTKIRPEAS 533

Query: 397 NPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISK 430
               QKS    + +K  +  K     + + K ++
Sbjct: 534 IEATQKSAKLQKIQKTENILKKRAGRENATKTTQ 567


>gi|47207397|emb|CAF90961.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 502

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 104/400 (26%), Positives = 180/400 (45%), Gaps = 27/400 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++PML 
Sbjct: 90  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPMLE 149

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120
            ++    +    + L+L PTRELA QV+    +  K+   + V    GG        +L+
Sbjct: 150 RIDL---KKDHIQALVLVPTRELALQVSQISIQIAKHLGGVKVMATTGGTNLRDDIMRLD 206

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVI-------DEADRMLDMGFIPYIQNITSL 173
               V+I TPGRILD   +G   ++ ++I+V+        +A     +G       + S 
Sbjct: 207 ETVHVVIATPGRILDLMKKGVAKVDKVQIMVMDEVGKRTPKAALCGGVGAAGPCVWVVSP 266

Query: 174 VPFTRQTLLFSATMTDELQK----------------VSENFLQNPKRIEVNTPSSTAETI 217
                 +  F A + D +                    + F+    +           T+
Sbjct: 267 QADKLLSQDFVALVEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTL 326

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
           +           ++       L S+  +   IIFCN  + V  L   + + G+S   IH 
Sbjct: 327 KGITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHA 386

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
            + Q  R ++  +F+ G  + +V +DL  RG+DI  V  V NFD P  AE Y+HRIGR+G
Sbjct: 387 KMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSG 446

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
           R G  G A  L+  +D  ++  IE+ +   +  + G +  
Sbjct: 447 RFGHLGLAINLITSDDRFNLKTIEEQLITDIKPIPGSIDK 486


>gi|295097891|emb|CBK86981.1| Superfamily II DNA and RNA helicases [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 442

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 139/440 (31%), Positives = 220/440 (50%), Gaps = 6/440 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ A+   G+ +PT IQ   IP  L+  DV G A TGTGKTA+++LP + 
Sbjct: 5   TFSELELDESLLNALESKGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPVLQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVA++  +   N +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVAEHARELAANTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I     +  QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIELIAGETRWRNQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT   D ++  +E  L++P  +     +   + I   +        K      + L
Sbjct: 185 MLFSATLEGDAIKDFAERLLEDPVEVSATPSTRERKKIHQWYYRADNLEHKVEL--LKHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+     I+F  +++ V  L   L   G + C + G + Q  R + +    +G + ++
Sbjct: 243 LKQEEATRTIVFVRKRERVHELAEMLRNAGINNCYLEGEMAQVKRTEGIKRLTDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIPDV HV NFD+P   + Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGIAISLVEAHDHLLLQK 362

Query: 360 IEKLIEK--KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           I + +E+  K   ++G   +   P EK+       A       ++      R K      
Sbjct: 363 IGRYVEEPLKARVIDGLRPTTRAPSEKMTGKPSKKALAKRAERKEKEKEKPRVKQRHRDT 422

Query: 418 SHIPLKESEKISKLQQDIQE 437
            +I  +     +  +   +E
Sbjct: 423 KNIGKRRKPSSAAPETKTEE 442


>gi|261368147|ref|ZP_05981030.1| cold-shock DEAD box protein A [Subdoligranulum variabile DSM 15176]
 gi|282569910|gb|EFB75445.1| cold-shock DEAD box protein A [Subdoligranulum variabile DSM 15176]
          Length = 395

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 117/367 (31%), Positives = 206/367 (56%), Gaps = 8/367 (2%)

Query: 1   MDFADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M F +L  ++P+++ A    G+ + T IQ K IPL++  HD+   A TGTGKT +F +P+
Sbjct: 1   MQFTELTHVAPEIIRATQAMGFTEMTEIQEKAIPLMMDGHDMIAKAPTGTGKTVAFGIPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
           L+ ++    +   P+ ++L PTRELA Q+A + +   +    + +  + GG   + Q ++
Sbjct: 61  LSKVDPASLK---PQAVVLSPTRELAQQIAQDLQNLAQFLPAIKIVCVYGGAGLDKQQRQ 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G  +++ TPGR++DH+    + ++++E +V+DEAD ML+MGF   +++I  L+   +
Sbjct: 118 LKAGCQIVVATPGRLMDHYRHHAIDVSDVETVVLDEADEMLNMGFYKDVRHIIDLMKHRK 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
              +FSAT++ E+  +   +  N   +   +     ++             +        
Sbjct: 178 SLSMFSATISREVLDIGWLYQHNAAEV---SVQPVEDSSPKIAQYKLLTTGRDKLADAAQ 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   +  K  +IFCN K N   L + L +  F+V  +HG++ Q  R +I++ FK G I +
Sbjct: 235 IIISEGYKRVMIFCNTKYNTGMLANQLARLNFNVDCLHGDLSQAERNRIMTRFKAGEIAV 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ DV  V N+DVP   E+Y HRIGRTGRA + G ++    KE+ K +D
Sbjct: 295 LVATDVAARGIDVSDVDAVINYDVPEENEHYTHRIGRTGRARKEGASYLFYTKEEQKRVD 354

Query: 359 AIEKLIE 365
            + +L  
Sbjct: 355 QLLRLTR 361


>gi|157144489|ref|YP_001451808.1| ATP-dependent RNA helicase SrmB [Citrobacter koseri ATCC BAA-895]
 gi|157081694|gb|ABV11372.1| hypothetical protein CKO_00206 [Citrobacter koseri ATCC BAA-895]
          Length = 445

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 140/441 (31%), Positives = 218/441 (49%), Gaps = 6/441 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP + 
Sbjct: 5   TFSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT     +   +E  L++P  +     +   + I   +        K        L
Sbjct: 185 MLFSATLEGGAINDFAERLLEDPVEVSATPSTRERKKIHQWYYRADDIQHKTAL--LVHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      I+F  +++ V  L   L + G + C + G + Q  R + +    +G + ++
Sbjct: 243 LKQPEATRSIVFVRKRERVHELAGWLREAGINNCYLEGEMVQGKRNEAIKRLTDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DIPDV HVFNFD+P  ++ Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 IATDVAARGIDIPDVSHVFNFDMPRSSDTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGK 362

Query: 360 IEKLIEKKVDWLNGDL--SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           + + IE+ +     D    +   P EK+               +K      R K      
Sbjct: 363 VGRYIEETLKARVIDELRPTTRAPSEKLTGKPSKKVLAKRAEKKKQEKEKPRVKKRHRDT 422

Query: 418 SHIPLKESEKISKLQQDIQEN 438
            +I  +     +      Q N
Sbjct: 423 KNIGKRRKPAGTGTDAQKQSN 443


>gi|71982858|ref|NP_001021985.1| HELicase family member (hel-1) [Caenorhabditis elegans]
 gi|2500533|sp|Q18212|DX39B_CAEEL RecName: Full=Spliceosome RNA helicase DDX39B homolog; AltName:
           Full=DEAD box protein UAP56
 gi|3874509|emb|CAA91120.1| C. elegans protein C26D10.2a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 425

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 99/395 (25%), Positives = 168/395 (42%), Gaps = 13/395 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q + IP  +   DV   A++G GKTA FV+  L  
Sbjct: 43  FRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE     V +             ++  + F KY     + V      I  + +    +  
Sbjct: 103 LEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCP 162

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    +    L      ++ +    + D      +Q I  + P  +Q ++
Sbjct: 163 HIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDADMRRDVQEIVKMTPQQKQVMM 222

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  EL+ V + F+Q+P  + V+  +               +  K        L   
Sbjct: 223 FSATLPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNR--RLLNLLDA 280

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    K    L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 281 LEFNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVAT 340

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           DL  RG+DI  V  VFN+D+P  +++Y+HR+ R GR G  G A T V+ E D K +++++
Sbjct: 341 DLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKTLNSVQ 400

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
              +  +  L           EKID++ +   R N
Sbjct: 401 DRFDISITELP----------EKIDVSTYIEGRTN 425


>gi|254506632|ref|ZP_05118773.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
 gi|219550505|gb|EED27489.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
          Length = 458

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 151/418 (36%), Positives = 230/418 (55%), Gaps = 15/418 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L P++   +   GY + TPIQ + +PLVL   DV G  +TG+GKTA+F L +L+
Sbjct: 4   SFKTLNLRPELTETLDSLGYTEMTPIQQQALPLVLAGKDVIGQGKTGSGKTATFSLGLLS 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+   TL+L PTRELA QVA       +  +    L +  G+P   Q   LE
Sbjct: 64  NLNVSRFRVQ---TLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH ++G++ +  +  LV+DEADRMLDMGF   I  I    P  RQT
Sbjct: 121 HGAHILVGTPGRILDHMSKGRISLKELNTLVLDEADRMLDMGFEEAIDTIIEAAPSKRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D ++ +SE  +  P+ ++V +   T +             +++     + L 
Sbjct: 181 LLFSATFPDNIESLSEKVMVAPEMVKVES---THQKSTIEQRFFKLNSTEERDDALEALL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++FCN KK V N+   L  +GFSV  +HG+++QR R + L+ F   +I ++V
Sbjct: 238 LTHKPESSVVFCNTKKEVQNVTDELSHRGFSVVELHGDMEQREREQALTMFANKSISILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+  ++++   +  I
Sbjct: 298 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAFSFYSEKEEYRVARI 357

Query: 361 EKLIEKKV--DWLNGDLSSLN--PPLEKIDIA--QHNHARKNNPIP--QKSTGFDRRK 410
           ++ ++  V    L   L      P ++ I I   +    R  + +    K  G D +K
Sbjct: 358 DEYMDIAVSPSELPEKLIERPFYPKMQTIQILGGKKQKVRAGDILGALTKQAGLDGKK 415


>gi|195403478|ref|XP_002060316.1| GJ16043 [Drosophila virilis]
 gi|194140655|gb|EDW57129.1| GJ16043 [Drosophila virilis]
          Length = 605

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 129/379 (34%), Positives = 206/379 (54%), Gaps = 5/379 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +       +  +    Y++PTPIQ ++ P+V+  +++ GIA+TG+GKT +F+LP +  
Sbjct: 123 FDEACFPEYCMNEIRRQRYIEPTPIQAQSWPIVMSGNNLVGIAKTGSGKTLAFILPAIVH 182

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA Q+      +G + ++    + GG P   Q   L+
Sbjct: 183 IRGQAPLERGGGPIALVLAPTRELAQQIQSVANDFGSSSSVRNTCIFGGSPRTKQASDLQ 242

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR+LD    G   +     LV+DEADRM+DMGF P I+ I   +   RQT
Sbjct: 243 RGVEIVIATPGRLLDFLQAGTTNLRRCTYLVLDEADRMMDMGFEPQIRKIFGQIRPDRQT 302

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ---Q 237
           L++SAT   E+++++E+FL N   I + +   +A      +V   A++ K   L      
Sbjct: 303 LMWSATWPKEVRQLAEDFLGNYIHINIGSMELSANHNIRQYVEVCAEHEKGAKLKDLLSH 362

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +          IIF   KK V  L   +   G SV +IHG+  Q  R  +L++F+ G   
Sbjct: 363 IYDQAAMPGKIIIFVATKKKVDKLARFINALGVSVGSIHGDKSQMDRDNVLNDFRSGRAN 422

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  + +V NFD P  +E+YIHRIGRTGR    G ++    +++ K  
Sbjct: 423 ILVATDVAARGLDIDGIKYVINFDFPQSSEDYIHRIGRTGRNRSTGTSYAFFTRKNAKCA 482

Query: 358 DAIEKLIEKKVDWLNGDLS 376
            A+ +++ +    +N +L 
Sbjct: 483 RALIEVLREANQIVNPELE 501


>gi|323302724|gb|EGA56530.1| Dbp1p [Saccharomyces cerevisiae FostersB]
          Length = 617

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 138/395 (34%), Positives = 210/395 (53%), Gaps = 19/395 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF+   L   ++  +  A + KPTP+Q  +IP+V +  D+   AQTG+GKT  F+ P+ 
Sbjct: 154 LDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLF 213

Query: 61  TILEKG------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
           T L +              +R   P  L+L PTRELA Q+ +   K+     +   ++ G
Sbjct: 214 TELFRSGPSPVPEKAQSFYSRKGYPXALVLAPTRELATQIFEEARKFTYRSWVRPCVVYG 273

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G P   Q ++++RG D+L+ TPGR+ D   RGK+ + NI+ LV+DEADRMLDMGF P I+
Sbjct: 274 GAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIR 333

Query: 169 NITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           +I           RQTL+FSAT   ++Q ++ +FL N   + V    ST+E I    +  
Sbjct: 334 HIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYV 393

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                K   L     + +      +IF   K+    L   L  Q F   AIHG+  Q  R
Sbjct: 394 DDMDKKSALLDLLSAEHKG---LTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAER 450

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + LS FK     ++VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G 
Sbjct: 451 ERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGV 510

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           A +     +   +  + +++ +    +   LS L+
Sbjct: 511 ATSFFNSNNQNIVKGLMEILNEANQEVPTFLSDLS 545


>gi|325275059|ref|ZP_08141046.1| ATP-dependent RNA helicase RhlB [Pseudomonas sp. TJI-51]
 gi|324099808|gb|EGB97667.1| ATP-dependent RNA helicase RhlB [Pseudomonas sp. TJI-51]
          Length = 483

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 132/380 (34%), Positives = 212/380 (55%), Gaps = 11/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F D  LS +V+ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ +   
Sbjct: 96  FHDFKLSSEVMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQ 155

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K 
Sbjct: 156 LQQTPAPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKA 215

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 216 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 275

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT T+++  +++ +  NP  +E+   +  +ET+E    A       K    
Sbjct: 276 SERQTLLFSATFTEDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYN 335

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                +Q+  +  ++F N+K  V  +   L + G +   + G++ Q  R++ L NF+EG 
Sbjct: 336 L---VTQNRWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLENFREGR 392

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG +G + +   ++D  
Sbjct: 393 ITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTNGVSISFAGEDDSY 452

Query: 356 HIDAIEKLIEKKVD-WLNGD 374
            + AIE+L+ +K+   +  D
Sbjct: 453 QLPAIEELLGRKIKCEMPPD 472


>gi|77736449|ref|NP_001029924.1| ATP-dependent RNA helicase DDX39 [Bos taurus]
 gi|59858465|gb|AAX09067.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 isoform 1 [Bos taurus]
 gi|296485978|gb|DAA28093.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Bos taurus]
          Length = 427

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 166/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY  +  ++V      I  + +  K    
Sbjct: 106 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKRNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    NR   L N    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 166 HVVVGTPGRILALVRNRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRFEVNVAELPEEID 418


>gi|258448717|ref|ZP_05696829.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A6224]
 gi|257857995|gb|EEV80884.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A6224]
          Length = 448

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 132/450 (29%), Positives = 219/450 (48%), Gaps = 15/450 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ AV D  + KPT IQ + IP +L+R ++ G +QT TGK+ +F+LP++ +
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTSTGKSHAFLLPLMQL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNKKLER 121
           ++     ++ P+ +++ PTRELA Q+ D      +        + IGG   E   ++   
Sbjct: 66  IDS---EIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRCNA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L ++    LVIDEAD M+D+G I  +  I + +       
Sbjct: 123 QPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNANIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +LQ     +L +P+ + V++     + IE   + T      +  L       
Sbjct: 183 VFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPTKGAAKVEKTLNL---ID 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFCN + N  +L  SL + G  V  IHG +  R R + +   +    Q ++A
Sbjct: 240 ILNPYLCIIFCNSRDNANDLASSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYVIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  IE
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 362 K--LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-----KKNYS 414
               +   VD  +G+L  +    ++    + +    N    +  +    +     KK + 
Sbjct: 360 DRGFVFNTVDIKDGELKEVKAHNQRQARMRKDDHLTNQVKNKVRSKIKNKVKPGYKKKFK 419

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLG 444
            +   +  +E ++ SK QQ+ Q+   +  G
Sbjct: 420 QEVEKMKRQERKQFSK-QQNRQKRKQNKKG 448


>gi|238789022|ref|ZP_04632811.1| ATP-independent RNA helicase dbpA [Yersinia frederiksenii ATCC
           33641]
 gi|238722786|gb|EEQ14437.1| ATP-independent RNA helicase dbpA [Yersinia frederiksenii ATCC
           33641]
          Length = 460

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 127/374 (33%), Positives = 204/374 (54%), Gaps = 8/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L 
Sbjct: 5   SFSSLTLPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLD 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            +  G     + + LIL PTRELA QV+    +  +       L + G  P   Q   L 
Sbjct: 65  KIAVGE---FVTQALILCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLV 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRI +H  +  L++++++ILV+DEADRMLDMGF   I ++ +  P  RQT
Sbjct: 122 HAPHIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++         +R  VN      +         +    +K   L   + 
Sbjct: 182 LLFSATYPVGIER----ISARVQRQPVNVEVEDGDEEPAIEQVFFETTREKRLPLLIAVL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+  ++  +LE +G SV A+HG+++QR R ++L  F   + +++V
Sbjct: 238 SHYQPASCVVFCNTKKDCQSVFEALESRGISVLALHGDLEQRDRDQVLVRFSNRSCRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+  V NF++    E ++HRIGRTGRAG  G A +L   +++    AI
Sbjct: 298 ATDVAARGLDIKDLALVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMARAHAI 357

Query: 361 EKLIEKKVDWLNGD 374
           E  ++ K+ W   +
Sbjct: 358 EDYLQIKLKWTPAE 371


>gi|195446424|ref|XP_002070774.1| GK12237 [Drosophila willistoni]
 gi|194166859|gb|EDW81760.1| GK12237 [Drosophila willistoni]
          Length = 478

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 97/385 (25%), Positives = 173/385 (44%), Gaps = 14/385 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  L L P+++  +   G+  P+ IQ   +P +L     ++   +Q+GTGKTA+FVL M
Sbjct: 92  TFEALHLKPELLKGIYAMGFNTPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 151

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +      +  P+ L L PT ELA Q  +   + G+                 ++ K+
Sbjct: 152 LSRVNTA---LNHPQVLCLSPTYELAIQTGEAAARMGQFSPDIKLRFAVRGEEVDRSSKI 208

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             R   +      ++ +    +   G       I  ++  + Q
Sbjct: 209 TEHILIGTPGKMLDWGLKFRLFDMKKITVFVLDEADVMIATQGHHDQCIRIHKMLKTSCQ 268

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSAT   E+   +   + +P  I +     + + I+  +V    +  K      Q +
Sbjct: 269 MLFFSATYNKEVMDFARLIVTDPTIIRLMREEESLDNIKQYYVKCKNEDGK--YNAIQNI 326

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               ++   IIFC+ +K    L   + K G SV  + G++    R+ +L  F+ G  +++
Sbjct: 327 YGCISIGQAIIFCHTRKTASWLASKMSKDGHSVAVLSGDLTVEQRLAVLDRFRSGLEKVL 386

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           + +++ +RG+DI  V  V NFD+P         E Y+HRIGRTGR G+ G A  LV +++
Sbjct: 387 ITTNVLSRGIDIEQVTIVVNFDLPIDSRGKADCETYLHRIGRTGRFGKSGIAINLVDSEK 446

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSS 377
            ++   AIEK  +K +++LN D + 
Sbjct: 447 SMEVCAAIEKHFQKDIEFLNTDNAD 471


>gi|71999644|ref|NP_741348.2| hypothetical protein Y94H6A.5 [Caenorhabditis elegans]
 gi|51536859|gb|AAU05555.1| Hypothetical protein Y94H6A.5a [Caenorhabditis elegans]
          Length = 825

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 115/368 (31%), Positives = 194/368 (52%), Gaps = 3/368 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +  +GL   V  A+   G+ +PTPIQ KTIP ++   DV  +++TG+GKTA+FV+PM  +
Sbjct: 26  WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPM--L 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +  R      R L++ PTRELA Q     ++ G+   L  A L+GG   E Q   +   
Sbjct: 84  QKLKRRDTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHEN 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+L       L ++ ++ +V DEADR+ +MGF   +      +P +RQTLL
Sbjct: 144 PDILLATPGRLLHVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIPESRQTLL 203

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L   ++  L +P  + ++     ++ +            K  ALL    +  
Sbjct: 204 FSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSM-VFCMCRPDEKLFALLHLCRRMD 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  ++FC   K+V  +   L + G     ++  +D  +R   +  F E    ++V +
Sbjct: 263 RENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKMNIQKFHEKQNNILVVT 322

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP +  V N   P +A+ ++HR+GR  RAGR G A +L+A +++ ++  +  
Sbjct: 323 DVAARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSGTAISLIANDELPYLTDLFM 382

Query: 363 LIEKKVDW 370
            + K +++
Sbjct: 383 FLGKPINF 390


>gi|302660003|ref|XP_003021686.1| hypothetical protein TRV_04197 [Trichophyton verrucosum HKI 0517]
 gi|291185595|gb|EFE41068.1| hypothetical protein TRV_04197 [Trichophyton verrucosum HKI 0517]
          Length = 813

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 124/433 (28%), Positives = 204/433 (47%), Gaps = 37/433 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +++ GL  +++  +   GY  P+PIQ  +IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 371 SWSESGLPKRLLEIIDSVGYKDPSPIQRVSIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 430

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                    E    R   P  +IL PTRELA Q+     K+    N  V  ++GG   E 
Sbjct: 431 YISSLPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEE 490

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 491 QAYNLRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 550

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ------- 227
           P + +          +            ++  + T +  +                    
Sbjct: 551 PVSNEKPDTEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 610

Query: 228 -----------------YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
                              K+   L ++L S++     I+F N K+N   +   ++  GF
Sbjct: 611 IGEAVDTVEQRVEFVAGEDKRKKRLAEILTSREYRPPIIVFVNIKRNCDAVARDIKHMGF 670

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++    E+Y 
Sbjct: 671 SAVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYT 730

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ 
Sbjct: 731 HRIGRTGRAGKSGVAITFLGSEDNDVLYDLKQML------MKSSISRVPEELRKHEAAQS 784

Query: 391 NHARKNNPIPQKS 403
              R      QK 
Sbjct: 785 KPIRGMGAAGQKK 797


>gi|302503157|ref|XP_003013539.1| hypothetical protein ARB_00357 [Arthroderma benhamiae CBS 112371]
 gi|291177103|gb|EFE32899.1| hypothetical protein ARB_00357 [Arthroderma benhamiae CBS 112371]
          Length = 812

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 124/433 (28%), Positives = 204/433 (47%), Gaps = 37/433 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +++ GL  +++  +   GY  P+PIQ  +IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 370 SWSESGLPKRLLEIIDSVGYKDPSPIQRVSIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 429

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                    E    R   P  +IL PTRELA Q+     K+    N  V  ++GG   E 
Sbjct: 430 YISSLPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEE 489

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 490 QAYNLRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 549

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ------- 227
           P + +          +            ++  + T +  +                    
Sbjct: 550 PVSNEKPDTEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 609

Query: 228 -----------------YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
                              K+   L ++L S++     I+F N K+N   +   ++  GF
Sbjct: 610 IGEAVDTVEQRVEFVAGEDKRKKRLAEILTSREYRPPIIVFVNIKRNCDAVARDIKHMGF 669

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++    E+Y 
Sbjct: 670 SAVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYT 729

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ 
Sbjct: 730 HRIGRTGRAGKSGVAITFLGSEDNDVLYDLKQML------MKSSISRVPEELRKHEAAQS 783

Query: 391 NHARKNNPIPQKS 403
              R      QK 
Sbjct: 784 KPIRGMGAAGQKK 796


>gi|170053024|ref|XP_001862487.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus]
 gi|167873709|gb|EDS37092.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus]
          Length = 935

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 142/412 (34%), Positives = 216/412 (52%), Gaps = 8/412 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +      V+  +   G+  PT IQ +  P+ L   D+ GIAQTG+GKT +++LP + 
Sbjct: 254 TFDEGNFPEFVINEINKQGFPSPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYMLPAIV 313

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNK 117
               +K   R   P  L+L PTRELA Q+      +G +   N+    + GG     Q +
Sbjct: 314 HIAHQKPLQRGDGPIVLVLAPTRELAQQIQTVVRDFGTHSKPNIRYTCIFGGALKGPQVR 373

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LERG +V+I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   
Sbjct: 374 DLERGVEVVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 433

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ L++SAT   E+Q ++E+FL +  +I V + + +A    H  V    +  K+  LL  
Sbjct: 434 RQVLMWSATWPKEVQALAEDFLHDYIQINVGSLNLSANHNIHQIVDICEENEKEGKLLSL 493

Query: 238 LLQSQDTMKNGIIFC-NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L +    + N II     KK V +L  ++ + G+   +IHG+  Q  R  +L +F+ G  
Sbjct: 494 LKEIASDVNNKIIIFVETKKKVEDLLKNIVRDGYGATSIHGDKSQSERDYVLQDFRHGKS 553

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLD+ DV +V NFD PN +E+YIHRIGRTGR    G A+T     + + 
Sbjct: 554 TILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCSSFGTAYTFFTPGNGRQ 613

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
              +  ++E+       +L S+   +      +   +R N      S G+ R
Sbjct: 614 ARELLSVLEEAGQQPTPELISMAKSM---PGGKGGRSRYNVRGALTSGGYGR 662


>gi|122890545|emb|CAM14115.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39a [Danio rerio]
          Length = 427

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 163/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY  +    V      I  +    K    
Sbjct: 106 IEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMSSVKCAVFFGGMSIKKDEDVLKKNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L N    ++ +    +  +     +Q+I  L P  +Q ++
Sbjct: 166 HIVVGTPGRILALSRNKTLTLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF       V L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVPRCVALSQLLVEQNFPAIAIHRGMTQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKILNDVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRFEVNVAELPEEID 418


>gi|297807157|ref|XP_002871462.1| hypothetical protein ARALYDRAFT_487950 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317299|gb|EFH47721.1| hypothetical protein ARALYDRAFT_487950 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 427

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 162/376 (43%), Gaps = 3/376 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D+G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 48  FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V                     F  Y  +  ++V      I       K E  
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECP 167

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L N    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 168 HIVVGTPGRVLALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  I V+  +              ++  K        L   
Sbjct: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNR--KLNDLLDA 285

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L +  F    IH  + Q  R+    +FKEG  +++VA+
Sbjct: 286 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVAT 345

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDAIE 361
           DL  RG+DI  V  V N+D+P+ A+ Y+HR+GR GR G  G A T V +  D + ++ ++
Sbjct: 346 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQ 405

Query: 362 KLIEKKVDWLNGDLSS 377
           +  E  +  L   + +
Sbjct: 406 ERFEVDIKELPEQIDT 421


>gi|320536466|ref|ZP_08036500.1| DEAD/DEAH box helicase [Treponema phagedenis F0421]
 gi|320146675|gb|EFW38257.1| DEAD/DEAH box helicase [Treponema phagedenis F0421]
          Length = 618

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 207/383 (54%), Gaps = 9/383 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           + F D+GL   V+ A+   G+  PTPIQI  IP +L    ++   A+TGTGKT +F LP+
Sbjct: 3   LSFKDIGLEDIVLQAIEAKGFETPTPIQILAIPRLLSGETNIIAKARTGTGKTGAFGLPL 62

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  L      +  PR L+L PTRELA QVA   E +       +A++ GG     Q + L
Sbjct: 63  IQELRA---DLGHPRALVLVPTRELAMQVAAEIESFRIETYPRIAVVYGGSSMSEQLRAL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++GA++++ TPGRI+DH  RG L +  IE  ++DEAD ML+MGFI  I+ I S      +
Sbjct: 120 KKGAEIIVGTPGRIIDHIERGSLDLTQIEYFILDEADEMLNMGFISDIETIFSKANSNAR 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSATM   +  ++ +F+ + + +       + E +       +    +        L
Sbjct: 180 ILMFSATMPKPILSIASDFMGDYEIV---AEELSEEPVSLTEQFYWFVREEDKIEALIRL 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   G++FC  K +  ++   LE++G+   A+HG+I Q  R KILS F+   I+ +
Sbjct: 237 IDITPDFYGLVFCQTKLDADSVAKELEERGYEAAALHGDIPQNQREKILSRFRSKKIRTL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV N+ +P     Y HRIGRTGRAG  G A + +   + + ID 
Sbjct: 297 VATDVAARGIDIEGITHVVNYAIPYDGPTYTHRIGRTGRAGSTGTAVSFIRPNESRKIDY 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPL 382
           + +    + ++  G + S+   L
Sbjct: 357 LARH--ARGEFKEGKIPSIEKVL 377


>gi|238793781|ref|ZP_04637402.1| ATP-dependent RNA helicase srmB [Yersinia intermedia ATCC 29909]
 gi|238726845|gb|EEQ18378.1| ATP-dependent RNA helicase srmB [Yersinia intermedia ATCC 29909]
          Length = 441

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 151/447 (33%), Positives = 233/447 (52%), Gaps = 25/447 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP + 
Sbjct: 5   NFSELDLDERLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K+  L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I +   + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT   + +++ +E  L  P  +E +      + I+  +        K        L
Sbjct: 185 LLFSATLEGEAIREFAERILNEPVELEADPSRRERKKIQQWYYRADNIEHKTAL--LVHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  ++  IIF   ++ V  L   L + G +   + G + Q  R + +    +G + ++
Sbjct: 243 LKQPEVQKSIIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLGDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI D+ HVFNFD+P  ++ Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDVASRGLDIDDISHVFNFDLPLTSDVYLHRIGRTGRAGRKGVAISLVEAHDHLLLGK 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           I +               LN PL+   I   +  R  +  P + T     KK  + +K  
Sbjct: 363 IGRY--------------LNEPLKPRVI---DELRPTSKAPSEKTTGKPSKKVLAKRKE- 404

Query: 420 IPLKESEKISKLQQDIQENDADSLGFR 446
             LKE+ K  K++  ++  DA ++G R
Sbjct: 405 --LKEASK-EKVKVKVRHRDAKNVGKR 428


>gi|58259181|ref|XP_567003.1| Pre-mRNA splicing factor RNA helicase PRP28 [Cryptococcus
           neoformans var. neoformans JEC21]
 gi|134107275|ref|XP_777522.1| hypothetical protein CNBA6450 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687426|sp|Q5KNF8|PRP28_CRYNE RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|50260216|gb|EAL22875.1| hypothetical protein CNBA6450 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223140|gb|AAW41184.1| Pre-mRNA splicing factor RNA helicase PRP28, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 738

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 126/424 (29%), Positives = 212/424 (50%), Gaps = 33/424 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ +  +  +++  + + GY +P+PIQ + IP+ +Q  D+ G+A+TG+GKTA+FV+PML 
Sbjct: 316 NWRESAIPSQILDIIEEIGYKEPSPIQRQAIPIGMQNRDLIGVAKTGSGKTAAFVIPMLD 375

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +          R   P  LI+ PTRELA Q+     ++          ++GG   E Q 
Sbjct: 376 YIGHLPPLNDDNRHLGPYALIMAPTRELAQQIETETRRFALPLGYKCVSIVGGRSVEEQQ 435

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS---- 172
             L  GA+++I TPGR+ D  ++  L+M+    +V+DEADRM+D+GF   +  I      
Sbjct: 436 FALRDGAEIIIATPGRLKDMVDKSILVMSQCRYVVMDEADRMVDLGFEVDLNFILDSMPA 495

Query: 173 -----------------LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
                                 R T LFSATM   +++++  +L  P  + +       +
Sbjct: 496 TFVKPDDSVALQPTKEGEWQGWRVTTLFSATMPPAVERLARKYLIKPATVVIGNAGEAVD 555

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
           T+    V       KK A L ++L++       I+F NQKK    +   +++ G S   +
Sbjct: 556 TV-EQRVEFVHGDEKKKARLIEILRTIGLPPPIIVFVNQKKTADMVVKYVQQAGMSGVTL 614

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           H    Q  R   L   ++G I ++VA+DLA RG+D+PDV  V N+ + +  E Y+HRIGR
Sbjct: 615 HSGKSQEQREAALQALRDGEISVLVATDLAGRGIDVPDVSLVINWQMSDTIEKYVHRIGR 674

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           TGRAG+ G A T +  +D + +  +      +++     +S +NP L + + A+    R+
Sbjct: 675 TGRAGKTGVAITFLTNDDDEVMYDL------RIEVEKSKMSKMNPELARHEAARTRVTRE 728

Query: 396 NNPI 399
               
Sbjct: 729 MKRK 732


>gi|330040429|ref|XP_003239908.1| DEAD box protein [Cryptomonas paramecium]
 gi|327206834|gb|AEA39010.1| DEAD box protein [Cryptomonas paramecium]
          Length = 396

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 205/377 (54%), Gaps = 7/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+  ++V      G+   T IQ KTIP  L+  D+ G AQTG+GKT +FV+P+L  
Sbjct: 4   FKHLGVCEQIVRICDSVGFKYATKIQAKTIPYALKNRDILGYAQTGSGKTLAFVIPILQS 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K +         ++ P+RELA QVA   E  G  + + + LL  GI +  Q   ++R 
Sbjct: 64  LLKFQITFYS---FVIVPSRELAFQVASYIETIGYLFGIKIGLLTSGIEYATQISIIKRS 120

Query: 123 ADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             ++ICTPGR++++  +   L   NI+ +V DEADR+    F     ++   +P  +Q+ 
Sbjct: 121 PHMMICTPGRLIEYTEKTDNLFLKNIKKIVFDEADRLFQNDFDKKFLSVVENLPKFKQSF 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT  ++K+ +  + NP +I++N    T  T+   ++       K        + +
Sbjct: 181 LFSATMTINIEKLKKISMSNPVKIKINKKYKTVSTLVQNYIFMPF---KSKNCYLSYICN 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + +    IIF + +     +   L+   F V   HG + Q  R KIL +FK   I+++V+
Sbjct: 238 EFSDCLAIIFVDTQICAEKIAVLLKVLNFKVAYFHGKLSQDKRAKILHDFKLKKIKILVS 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLA+RG+DIPD+  + N+D+P    +YIHRIGRT RAG+ G+   LV + DI     IE
Sbjct: 298 TDLASRGIDIPDIELIINYDIPLYTRDYIHRIGRTARAGKTGRVINLVTQYDISSYQKIE 357

Query: 362 KLIEKKVDWLNGDLSSL 378
            L+++K++    +L  +
Sbjct: 358 ILLQRKLEEFKCNLKDI 374


>gi|313500476|gb|ADR61842.1| RhlB [Pseudomonas putida BIRD-1]
          Length = 480

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 131/380 (34%), Positives = 210/380 (55%), Gaps = 11/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F D  LS +++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ +   
Sbjct: 93  FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQ 152

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K 
Sbjct: 153 LQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKA 212

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 213 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 272

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT TD++  +++ +  NP  +E+   +  +ET+E    A       K    
Sbjct: 273 SERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYN 332

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                +Q+  +  ++F N+K  V  +   L + G +   + G++ Q  R++ L +F+EG 
Sbjct: 333 L---VTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGR 389

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 390 ITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSY 449

Query: 356 HIDAIEKLIEKKVD-WLNGD 374
            + AIE L+ +K+   +  D
Sbjct: 450 QLPAIEALLGRKIKCEMPPD 469


>gi|220913250|ref|YP_002488559.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
 gi|219860128|gb|ACL40470.1| DEAD/DEAH box helicase domain protein [Arthrobacter
           chlorophenolicus A6]
          Length = 561

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 136/400 (34%), Positives = 206/400 (51%), Gaps = 7/400 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  +   +V ++ DAG   P PIQ  T+P+ L  HD+ G A+TGTGKT  F +P L 
Sbjct: 38  SFADYNVRQDIVDSLSDAGITHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGIPALQ 97

Query: 62  ILEKGRARVRM-------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L++ PTRELA QVA + +      N  +A + GG  +E 
Sbjct: 98  RVVGRDDAGYDKLAVPGAPQALVIVPTRELAVQVASDLQAASTKRNARIATIYGGRAYEP 157

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L+ G +V++ TPGR++D + +  L + N+ I+V+DEAD MLD+GF+P ++ I +  
Sbjct: 158 QVEALKNGVEVVVGTPGRLIDLYRQKHLSLKNVRIVVLDEADEMLDLGFLPDVETIIAGT 217

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQTLLFSATM   +  ++  ++  P  I    P     T        Y  +S     
Sbjct: 218 PAVRQTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDEGLTKRDIRQLIYRAHSMDKTE 277

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +         IIF   K+    +   L  +GF+  AIHG++ Q +R + L  F+  
Sbjct: 278 VVARILQARGRGRTIIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRNN 337

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+      + Y+HR+GRTGRAG  G A T V  +D+
Sbjct: 338 KVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWDDV 397

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
                I K +   V       SS     E++DI +    R
Sbjct: 398 PRWALINKALGLNVPEPVETYSSSPHLYEELDIPEGTKGR 437


>gi|32363291|sp|Q88NB7|RHLB_PSEPK RecName: Full=ATP-dependent RNA helicase rhlB
 gi|24982750|gb|AAN66919.1|AE016320_7 ATP-dependent RNA helicase RhlB [Pseudomonas putida KT2440]
          Length = 398

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 131/380 (34%), Positives = 210/380 (55%), Gaps = 11/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F D  LS +++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ +   
Sbjct: 11  FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQ 70

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K 
Sbjct: 71  LQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKA 130

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 131 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 190

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT TD++  +++ +  NP  +E+   +  +ET+E    A       K    
Sbjct: 191 SERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYN 250

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                +Q+  +  ++F N+K  V  +   L + G +   + G++ Q  R++ L +F+EG 
Sbjct: 251 L---VTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGR 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 308 ITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSY 367

Query: 356 HIDAIEKLIEKKVD-WLNGD 374
            + AIE L+ +K+   +  D
Sbjct: 368 QLPAIEALLGRKIKCEMPPD 387


>gi|148549632|ref|YP_001269734.1| ATP-dependent RNA helicase RhlB [Pseudomonas putida F1]
 gi|161378136|ref|NP_743455.2| ATP-dependent RNA helicase RhlB [Pseudomonas putida KT2440]
 gi|148513690|gb|ABQ80550.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 480

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 131/380 (34%), Positives = 210/380 (55%), Gaps = 11/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F D  LS +++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ +   
Sbjct: 93  FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQ 152

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K 
Sbjct: 153 LQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKA 212

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 213 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 272

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT TD++  +++ +  NP  +E+   +  +ET+E    A       K    
Sbjct: 273 SERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYN 332

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                +Q+  +  ++F N+K  V  +   L + G +   + G++ Q  R++ L +F+EG 
Sbjct: 333 L---VTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGR 389

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 390 ITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSY 449

Query: 356 HIDAIEKLIEKKVD-WLNGD 374
            + AIE L+ +K+   +  D
Sbjct: 450 QLPAIEALLGRKIKCEMPPD 469


>gi|324502886|gb|ADY41264.1| ATP-dependent RNA helicase DDX46 [Ascaris suum]
          Length = 784

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 127/383 (33%), Positives = 195/383 (50%), Gaps = 8/383 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+  K++  +    Y KPT IQ + IP ++   DV GIA+TG+GKT +F+LPM  
Sbjct: 125 SWAQCGVEWKILNTLKKLEYTKPTAIQAQAIPAIMSGRDVIGIAKTGSGKTLAFLLPMFR 184

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +        +  P  +I+ PTRELA Q      K+ K  N+ VA + GG+    Q   L
Sbjct: 185 HIMDQPELEELDGPIAVIMSPTRELAMQTWKEANKFAKPLNIRVACVYGGVGISDQIGDL 244

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA+V++CT GR+ D           +  +  LV+DEADRM DMGF P +  I + +  
Sbjct: 245 KRGAEVIVCTVGRLTDMLAANKGKVTNLRRVTYLVLDEADRMFDMGFEPQVMKIVNNIRP 304

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT   +++ ++   L  P  I V   S   + +    V            L 
Sbjct: 305 DRQTVLFSATFPRQMEALARKILDKPVEILVGGKSVVCDDVSQNVVILEEHQK--MLKLL 362

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       N ++F ++++    L   L + G++   +HG IDQ  R   + +FK   I
Sbjct: 363 ELLGVYWEHGNVLVFVDKQEKADELVAQLMRSGYNCAPLHGGIDQFDRDSTILDFKAAKI 422

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIK 355
           +L+VA+ +AARGLD+  +  V N+D PN  E+Y+HR+GRTGRAG  G A+T +      +
Sbjct: 423 KLLVATSVAARGLDVKKLILVVNYDCPNHYEDYVHRVGRTGRAGNKGYAYTFILPHGQER 482

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
               + +  E         L  +
Sbjct: 483 MAGEVCRAFETASKEPPEQLKKI 505


>gi|324502742|gb|ADY41204.1| ATP-dependent RNA helicase DDX46 [Ascaris suum]
          Length = 973

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 127/383 (33%), Positives = 195/383 (50%), Gaps = 8/383 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+  K++  +    Y KPT IQ + IP ++   DV GIA+TG+GKT +F+LPM  
Sbjct: 314 SWAQCGVEWKILNTLKKLEYTKPTAIQAQAIPAIMSGRDVIGIAKTGSGKTLAFLLPMFR 373

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +        +  P  +I+ PTRELA Q      K+ K  N+ VA + GG+    Q   L
Sbjct: 374 HIMDQPELEELDGPIAVIMSPTRELAMQTWKEANKFAKPLNIRVACVYGGVGISDQIGDL 433

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA+V++CT GR+ D           +  +  LV+DEADRM DMGF P +  I + +  
Sbjct: 434 KRGAEVIVCTVGRLTDMLAANKGKVTNLRRVTYLVLDEADRMFDMGFEPQVMKIVNNIRP 493

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT   +++ ++   L  P  I V   S   + +    V            L 
Sbjct: 494 DRQTVLFSATFPRQMEALARKILDKPVEILVGGKSVVCDDVSQNVVILEEHQK--MLKLL 551

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       N ++F ++++    L   L + G++   +HG IDQ  R   + +FK   I
Sbjct: 552 ELLGVYWEHGNVLVFVDKQEKADELVAQLMRSGYNCAPLHGGIDQFDRDSTILDFKAAKI 611

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIK 355
           +L+VA+ +AARGLD+  +  V N+D PN  E+Y+HR+GRTGRAG  G A+T +      +
Sbjct: 612 KLLVATSVAARGLDVKKLILVVNYDCPNHYEDYVHRVGRTGRAGNKGYAYTFILPHGQER 671

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
               + +  E         L  +
Sbjct: 672 MAGEVCRAFETASKEPPEQLKKI 694


>gi|171847136|gb|AAI61525.1| LOC549577 protein [Xenopus (Silurana) tropicalis]
          Length = 678

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 127/389 (32%), Positives = 206/389 (52%), Gaps = 13/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +      +   V  AGYVK TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 252 LTFEEANFCETLSRNVTKAGYVKLTPVQKHSIPIILAGRDLMACAQTGSGKTAAFLLPIL 311

Query: 61  TILEK------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           + +            ++ P+ +I+ PTREL  Q+  +  K+     +   ++ GGI    
Sbjct: 312 SHMMNEGITASQFLPLQEPQAIIIAPTRELINQIYLDARKFSYGTCVRPVVVYGGIHPVH 371

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
             + +ERG ++L  TPGR++D   R K+ ++ ++ LV+DEADRMLDMGF P ++N     
Sbjct: 372 AMRDVERGCNILCATPGRLMDIIGREKIGLSKLKYLVLDEADRMLDMGFAPVMENLIGSP 431

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT   E+Q+++  FL++     V      A +     +    +Y K
Sbjct: 432 GMPAKEERQTLMFSATYPAEIQRLASKFLKSDHLFVVVGLVGGACSDVEQTILEIQEYRK 491

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  +IF N KK    +   L ++ F   +IHG+ +Q  R + + +
Sbjct: 492 RDKLVE--ILQSSGNERTMIFVNTKKKADVIAGYLCQEHFPTTSIHGDREQCQREEAIRD 549

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++V + +AARGLDI +V HV N+DVP   + Y+HRIGRTGR G  GKA +   
Sbjct: 550 FRSGKCPVIVCTAVAARGLDIENVQHVINYDVPKEIDEYVHRIGRTGRCGNVGKATSFFN 609

Query: 351 -KEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
             ED      + K++      +   L  +
Sbjct: 610 VNEDHVVARPLVKILTDAHQEVPAWLEEI 638


>gi|62857341|ref|NP_001016823.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Xenopus (Silurana)
           tropicalis]
 gi|89273979|emb|CAJ82187.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Xenopus (Silurana)
           tropicalis]
 gi|163916608|gb|AAI57773.1| hypothetical protein LOC549577 [Xenopus (Silurana) tropicalis]
          Length = 647

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 127/389 (32%), Positives = 206/389 (52%), Gaps = 13/389 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +      +   V  AGYVK TP+Q  +IP++L   D+   AQTG+GKTA+F+LP+L
Sbjct: 221 LTFEEANFCETLSRNVTKAGYVKLTPVQKHSIPIILAGRDLMACAQTGSGKTAAFLLPIL 280

Query: 61  TILEK------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           + +            ++ P+ +I+ PTREL  Q+  +  K+     +   ++ GGI    
Sbjct: 281 SHMMNEGITASQFLPLQEPQAIIIAPTRELINQIYLDARKFSYGTCVRPVVVYGGIHPVH 340

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
             + +ERG ++L  TPGR++D   R K+ ++ ++ LV+DEADRMLDMGF P ++N     
Sbjct: 341 AMRDVERGCNILCATPGRLMDIIGREKIGLSKLKYLVLDEADRMLDMGFAPVMENLIGSP 400

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT   E+Q+++  FL++     V      A +     +    +Y K
Sbjct: 401 GMPAKEERQTLMFSATYPAEIQRLASKFLKSDHLFVVVGLVGGACSDVEQTILEIQEYRK 460

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++  +      +  +IF N KK    +   L ++ F   +IHG+ +Q  R + + +
Sbjct: 461 RDKLVE--ILQSSGNERTMIFVNTKKKADVIAGYLCQEHFPTTSIHGDREQCQREEAIRD 518

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++V + +AARGLDI +V HV N+DVP   + Y+HRIGRTGR G  GKA +   
Sbjct: 519 FRSGKCPVIVCTAVAARGLDIENVQHVINYDVPKEIDEYVHRIGRTGRCGNVGKATSFFN 578

Query: 351 -KEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
             ED      + K++      +   L  +
Sbjct: 579 VNEDHVVARPLVKILTDAHQEVPAWLEEI 607


>gi|321455095|gb|EFX66239.1| hypothetical protein DAPPUDRAFT_219114 [Daphnia pulex]
          Length = 599

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 115/392 (29%), Positives = 199/392 (50%), Gaps = 9/392 (2%)

Query: 2   DFADL--GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP- 58
            FA L   +S   + AV + G+ K T IQ K+IP +L+  D+ G A+TG+GKT +F++P 
Sbjct: 106 TFASLEGSVSDLTLKAVEEMGFKKMTEIQAKSIPHLLEGRDLLGQAKTGSGKTLAFLIPA 165

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  I +           +I+ PTREL+ Q      +  ++++ T  L++GG   +A+  K
Sbjct: 166 IELIYKLKFMPRNGTGVIIISPTRELSMQTFGVLRELLRHHSHTYGLVMGGANRQAEAAK 225

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G ++L+ TPGR +    +    L  N++ L+IDEADR+LD+GF   ++ +  ++P  
Sbjct: 226 LVKGVNILVATPGRLLDHLNSTTDFLFKNLQCLIIDEADRVLDIGFEEELKQLIRILPKK 285

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+    I          T+E          ++K  L+  
Sbjct: 286 RQTMLFSATSTQKIEDLARLALKKEPIIVGVEDVVEKATVEGLEQGYVVCPAEKRFLMLF 345

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V  IHG   Q  R      F      
Sbjct: 346 SFLKRNRKKKIMVFFSSCLSVKFHHELLNYIDMPVMCIHGKQKQTKRTTTFFQFCNADSG 405

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
           +++ +D+AARGLDIP V  +  +D P+  + YIHR+GRT R  G  G A  L+  E++  
Sbjct: 406 ILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGQGGKGHALLLLRPEELGF 465

Query: 357 IDAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
           +  +++  +  ++        ++ + P LEK+
Sbjct: 466 LRYLKQA-KVPLNEFEFSWSKIADIQPQLEKL 496


>gi|312066551|ref|XP_003136324.1| RNA helicase [Loa loa]
 gi|307768519|gb|EFO27753.1| RNA helicase [Loa loa]
          Length = 952

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 128/383 (33%), Positives = 198/383 (51%), Gaps = 8/383 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+  K++  +    Y KPTPIQ + IP ++   DV GIA+TG+GKT +F+LPM  
Sbjct: 293 SWAQCGVEWKILSTLKKLEYKKPTPIQSQAIPAIISGRDVIGIAKTGSGKTLAFLLPMFR 352

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +     +  P  +I+ PTRELA Q      K+ K  ++ VA + GG+    Q   L
Sbjct: 353 HILDQPELEEMDGPIAVIMSPTRELAMQTWKEANKFAKQLDIRVACVYGGVGISDQIGDL 412

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA+V++CT GR+ D           +  +  LV+DEADRM DMGF P +  I + +  
Sbjct: 413 KRGAEVVVCTVGRLTDMLAANKGKVTNLRRVTYLVLDEADRMFDMGFEPQVMKIVNNIRP 472

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT   +++ ++   L  P  I V   S   + +    V            L 
Sbjct: 473 DRQTVLFSATFPRQMEALARKILDKPIEIMVGGKSVVCDDVNQNVVILEEHQK--MLKLL 530

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       N ++F ++++   +L   L + G++   +HG IDQ  R   + ++K G I
Sbjct: 531 ELLGVYWENGNVLVFVDKQEKADDLVTQLMRSGYNCAPLHGGIDQFDRDSTILDYKAGKI 590

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIK 355
           +L+VA+ +AARGLDI  +  V N+D PN  E+Y+HR+GRTGRAG  G A+T +      +
Sbjct: 591 KLLVATSVAARGLDIKKLILVVNYDCPNHYEDYVHRVGRTGRAGNKGYAYTFILPTGQER 650

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
               + +  E         L  +
Sbjct: 651 MAGEVCRAFETAGKEPPEQLKKM 673


>gi|150025165|ref|YP_001295991.1| ATP-dependent RNA helicase RhlE [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771706|emb|CAL43180.1| Putative ATP-dependent RNA helicase RhlE [Flavobacterium
           psychrophilum JIP02/86]
          Length = 448

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 132/441 (29%), Positives = 215/441 (48%), Gaps = 21/441 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L   V  A+ D     PTPIQ K+  +++   D+ GIAQTGTGKT +++LP+L 
Sbjct: 3   SFEQFNLPKSVQKALNDLQLTTPTPIQEKSFAVIMSGRDMMGIAQTGTGKTFAYLLPLLK 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                      P+ +IL PTREL  QV +  EK  K  +++   + GG+    Q K++  
Sbjct: 63  QYTF--TNTNTPKIVILVPTRELVVQVVEEVEKLTKYMSVSTLGIYGGVNINTQKKQVYE 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+L+ TPGR++D      +  ++ + LVIDE D ML++GF   I +I +++   RQ +
Sbjct: 121 GVDILVGTPGRVMDLALDAVIRFDDTQKLVIDEFDEMLNLGFRVQITSILAMLRTKRQNI 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMTDE+  +  ++   P+ + +    +  E IE          +K   L   L  +
Sbjct: 181 LFSATMTDEVDAILNDYFDFPEEVSLAMSGTPLEKIEQLSYNVPNFNTKVNLLKHLLHTN 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++  +  +   N+K   +               IH N  Q  R+  ++ F+EG ++ ++ 
Sbjct: 241 EEMSRILVFVNNKKIADMLHERIEGDFPDQFGVIHSNKSQNYRLTTMATFQEGELRGLIT 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLDI ++ HV NF+ P   E YIHRIGRTGRA   G A + +A  + +     E
Sbjct: 301 TDIMARGLDISNITHVINFEAPELPEQYIHRIGRTGRADASGIAISFIAPREEEIKFGAE 360

Query: 362 KLIEKKVDWL----NGDLSSL--NPPLEKIDI-------------AQHNHARKNNPIPQK 402
            L+ K+++ L      ++S L   P  EK  I             + H  + KN  +   
Sbjct: 361 VLMGKEIEILDLPEEVEISKLLIGPEKEKEVIKFLLKKVKLEGGASHHEKSEKNKKVNLG 420

Query: 403 STGFDRRKKNYSSQKSHIPLK 423
                ++K   S  ++ +  +
Sbjct: 421 GPSKTKKKTGTSVNRNILKTR 441


>gi|145475849|ref|XP_001423947.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391009|emb|CAK56549.1| unnamed protein product [Paramecium tetraurelia]
          Length = 737

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 129/453 (28%), Positives = 219/453 (48%), Gaps = 24/453 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           + F  L L  K+V  ++   + KPT IQ + +P VL   +V G+A+TG+GKT ++V PM 
Sbjct: 188 ISFGHLQLDQKLVNKIVAQNFEKPTAIQSQALPCVLSGRNVIGVAKTGSGKTIAYVWPML 247

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                ++   +   P  L++ PTREL  QV    +KY + + ++V+ L+GG     Q K+
Sbjct: 248 VHVSAQRAVEKKEGPIGLVVVPTRELGQQVYLETKKYAQLFQISVSALLGGENKHHQWKE 307

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D++I TPGR+++   +    +     +V+DEAD+M  +GF   I++I   +   +
Sbjct: 308 LRAGVDIIIATPGRLIEMVKKKATNLQRCTYIVLDEADQMFSLGFEYQIRSIIGQIRPDK 367

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLF+ATM  +++++  + L +P  I +    +                  +   L Q 
Sbjct: 368 QILLFTATMKKKIRQLCVDMLIDPIVITIGENENQVNEDIKQLPVIVDDDEGRLRWLLQN 427

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L++       +IF NQ     +L   ++++             +    ++ N  +  + L
Sbjct: 428 LKTYLQNGKVLIFANQMGQCESLLSEIKQKLGIQGLTLYGDKLQYERTLIINQFKQHVHL 487

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHI 357
           ++A+D+A+RGLDI ++  V N+  P  A+ YIHRIGRTGRAG   G A++LV K+D K  
Sbjct: 488 LIATDIASRGLDIKEIRTVINYFPPKDADIYIHRIGRTGRAGNCDGVAYSLVQKQDWKFA 547

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             + + IE     +  +L          +IA  +   K + + +K  G+D  +   +S+ 
Sbjct: 548 IMLVRSIELAGQIVPQELE---------EIANLDDHFKMDRMKKKM-GYDYARGKDASKI 597

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRGNMP 450
            H  LK            Q N    LGF    P
Sbjct: 598 LHQALKR-----------QTNSKAGLGFDEQEP 619


>gi|322706999|gb|EFY98578.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Metarhizium
           anisopliae ARSEF 23]
          Length = 714

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 121/431 (28%), Positives = 202/431 (46%), Gaps = 35/431 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + GL  +++  V   GY +PTPIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 273 SWEESGLPQRLLDIVDRVGYKEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLV 332

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +          +   P  LIL PTREL  Q+    +K+ +        ++GG   E Q 
Sbjct: 333 YISDLPPLTEVNKNDGPYALILAPTRELVQQIETEAKKFAEPLGFRCVSIVGGHSLEEQA 392

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GA++++ TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +P 
Sbjct: 393 FALRNGAEIIVATPGRLVDCIERRLLVLSQCCYIIMDEADRMIDLGFEESVNKILDALPV 452

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA------------- 223
           + +          +L K         ++  + T +                         
Sbjct: 453 SNEKPDTDDAENAQLMKSYLGSRDKYRQTMMYTATMPPLVERIAKKYLRRPATATIGNAG 512

Query: 224 -----------TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
                        +   ++   LQ++L   D     I+F N K+N   +   ++  G+S 
Sbjct: 513 EAVDTVEQRVEFISGEDRRKKRLQEILSKNDFAPPIIVFVNIKRNCDAVARDIKSMGWST 572

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
             +HG+  Q  R   L++ + G  Q++VA+DLA RG+D+PDV  V NF++    E+Y HR
Sbjct: 573 VTLHGSKTQEQREAALASVRSGATQVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHR 632

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T +  ED   +  + +++ K        +S +   L++ + AQ   
Sbjct: 633 IGRTGRAGKSGVAITFLGNEDADVMYDLRQMLSK------SSISKVPEELKRHEAAQSKP 686

Query: 393 ARKNNPIPQKS 403
            R      +  
Sbjct: 687 VRGGARREKDD 697


>gi|323352003|gb|EGA84542.1| Dbp1p [Saccharomyces cerevisiae VL3]
          Length = 551

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 138/395 (34%), Positives = 210/395 (53%), Gaps = 19/395 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF+   L   ++  +  A + KPTP+Q  +IP+V +  D+   AQTG+GKT  F+ P+ 
Sbjct: 88  LDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLF 147

Query: 61  TILEKG------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
           T L +              +R   P  L+L PTRELA Q+ +   K+     +   ++ G
Sbjct: 148 TELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYG 207

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G P   Q ++++RG D+L+ TPGR+ D   RGK+ + NI+ LV+DEADRMLDMGF P I+
Sbjct: 208 GAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIR 267

Query: 169 NITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           +I           RQTL+FSAT   ++Q ++ +FL N   + V    ST+E I    +  
Sbjct: 268 HIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYV 327

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                K   L     + +      +IF   K+    L   L  Q F   AIHG+  Q  R
Sbjct: 328 DDMDKKSXLLDLLSAEHKG---LTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAER 384

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + LS FK     ++VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G 
Sbjct: 385 ERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGV 444

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           A +     +   +  + +++ +    +   LS L+
Sbjct: 445 ATSFFNSNNQNIVKGLMEILNEANQEVPTFLSDLS 479


>gi|299758408|ref|NP_001177648.1| eukaryotic initiation factor 4a [Tribolium castaneum]
          Length = 419

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 133/377 (35%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 47  NFDDMNLKEELLRGIYAYGFEKPSAIQQRAIIPCVKGHDVIAQAQSGTGKTATFSISILQ 106

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G   +      IGG       +KLE 
Sbjct: 107 QIDTSLRE---CQALILAPTRELAQQIQKVVIALGDFMSAQCHACIGGTNVREDMRKLET 163

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L  N I++ V+DEAD ML  GF   I ++  ++    Q +
Sbjct: 164 GVHVVVGTPGRVYDMINRRSLRANFIKMFVLDEADEMLSRGFKDQIHDVFRMLNSDVQVI 223

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++  V+++F++NP RI V     T E I+  FV    +  K   L       
Sbjct: 224 LLSATMPADVLDVTKSFMRNPVRILVKKEELTLEGIKQFFVYVEREDWKLETLCDL--YD 281

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L  ++ K+ F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 282 TLSITQAVIFCNTRRKVDWLTENMHKRDFTVSAMHGDMEQRERDVIMRQFRTGSSRVLIT 341

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V +ED + +  IE
Sbjct: 342 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTEEDKRTLKDIE 401

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    K+D +  +++ L
Sbjct: 402 QFYNTKIDEMPMNVADL 418


>gi|149204026|ref|ZP_01880994.1| DEAD/DEAH box helicase-like protein [Roseovarius sp. TM1035]
 gi|149142468|gb|EDM30513.1| DEAD/DEAH box helicase-like protein [Roseovarius sp. TM1035]
          Length = 429

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 143/377 (37%), Positives = 226/377 (59%), Gaps = 5/377 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--IL 63
           +GL   +V  + + G  +PTPIQ   IP  L   DV G+AQTGTGKT +F LP++T  + 
Sbjct: 1   MGLPAALVRKLANEGITEPTPIQTHAIPHALNGFDVLGLAQTGTGKTMAFGLPLITALMQ 60

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
             G+   +  R+LIL PTRELA+Q+ D      K+  + + L++GG     Q K+LE+G 
Sbjct: 61  APGKPAPKTIRSLILAPTRELASQIRDALLPLVKDSPIKINLVVGGASINPQIKRLEQGT 120

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
           D+L+ TPGR+LD  +R  + ++    LV+DEAD+MLD+GFI  ++ I  L+   RQT+LF
Sbjct: 121 DILVATPGRLLDLIDRRAVRLDAAHFLVLDEADQMLDLGFIHALRRIAGLLAAERQTMLF 180

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM  ++++++ ++L++PKR++V+ P   A+ +                +        +
Sbjct: 181 SATMPKQMEELAGSYLKHPKRVQVSPPGKAADKVTQEVHFVAKAAKPDLLIELLAKHKSE 240

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
                ++F   K     L   LE+ G+SV AIHGN  Q  R + L +F++G ++++VA+D
Sbjct: 241 ---LALVFGRTKHGSDKLAKRLEQAGYSVAAIHGNKSQGQRERALKSFRDGHVKILVATD 297

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARGLDIPDV HV+N+++PN  +NY+HRIGRT RAGR G A    A +++  +  I+K+
Sbjct: 298 VAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGRDGAAIAFCAPDEMGELKDIQKV 357

Query: 364 IEKKVDWLNGDLSSLNP 380
           +   +   +G    + P
Sbjct: 358 LGTTIPVASGRPWEVLP 374


>gi|289665687|ref|ZP_06487268.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 458

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 128/381 (33%), Positives = 191/381 (50%), Gaps = 6/381 (1%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F+ L LSP +   +   GY   TPIQ +++P +LQ  DV   A TG+GKTA+F L +
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  L+    R +                        G      V L  G           
Sbjct: 61  LQQLDPALTRAQALVLC-PTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I S     RQ
Sbjct: 120 AHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT  D ++ ++   L++P  I V    +  E  +  F        K  A L    
Sbjct: 180 SLLFSATFPDIIRTLAREILKDPVEITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLL-- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ ++FCN +K V  +  SL++ GFS  A+HG+++QR R ++L  F   +  ++
Sbjct: 238 --RFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+HG A +LVA  +   + A
Sbjct: 296 VASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARVQA 355

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           +E    + + W    L++  P
Sbjct: 356 LEAAQGQPLKWSRAPLATARP 376


>gi|195024659|ref|XP_001985916.1| GH21077 [Drosophila grimshawi]
 gi|193901916|gb|EDW00783.1| GH21077 [Drosophila grimshawi]
          Length = 790

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 144/445 (32%), Positives = 230/445 (51%), Gaps = 16/445 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP + 
Sbjct: 159 SFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTVE 218

Query: 62  I-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +      + R L+L PTREL AQV    ++  +  ++ V L IGG+  +AQ   L 
Sbjct: 219 RLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLR 278

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  D++I TPGR++DH         ++IE+L++DEADRMLD  F   ++ I +    TRQ
Sbjct: 279 QNPDIVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQ 338

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM+++++ ++   L  P ++ VN     A  +   F+            +   L
Sbjct: 339 TMLFSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASL 398

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + ++F   KK    L   L   G     +HGN+ Q+ R++ L  FKE  I ++
Sbjct: 399 ICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVL 458

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAGR G + +L  +++ K +  
Sbjct: 459 IATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKD 518

Query: 360 IEKLIEKK----------VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           I K  E            +D     L++L P ++  +I     A +     ++      R
Sbjct: 519 IIKNAESSVKNRIIPPEIIDKYRNKLTALEPEIQ--NILDEEQAERQLAKTEQQLSKTER 576

Query: 410 K--KNYSSQKSHIPLKESEKISKLQ 432
           K     + +++    K+  +  K +
Sbjct: 577 KLLGQPNERRTWFQTKQQRENEKAR 601


>gi|189237234|ref|XP_970515.2| PREDICTED: similar to eukaryotic initiation factor 4A [Tribolium
            castaneum]
          Length = 1983

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 133/377 (35%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +F D+ L  +++  +   G+ KP+ IQ + I   ++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 1611 NFDDMNLKEELLRGIYAYGFEKPSAIQQRAIIPCVKGHDVIAQAQSGTGKTATFSISILQ 1670

Query: 62   ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             ++         + LIL PTRELA Q+       G   +      IGG       +KLE 
Sbjct: 1671 QIDTSLRE---CQALILAPTRELAQQIQKVVIALGDFMSAQCHACIGGTNVREDMRKLET 1727

Query: 122  GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            G  V++ TPGR+ D  NR  L  N I++ V+DEAD ML  GF   I ++  ++    Q +
Sbjct: 1728 GVHVVVGTPGRVYDMINRRSLRANFIKMFVLDEADEMLSRGFKDQIHDVFRMLNSDVQVI 1787

Query: 182  LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            L SATM  ++  V+++F++NP RI V     T E I+  FV    +  K   L       
Sbjct: 1788 LLSATMPADVLDVTKSFMRNPVRILVKKEELTLEGIKQFFVYVEREDWKLETLCDL--YD 1845

Query: 242  QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              ++   +IFCN ++ V  L  ++ K+ F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 1846 TLSITQAVIFCNTRRKVDWLTENMHKRDFTVSAMHGDMEQRERDVIMRQFRTGSSRVLIT 1905

Query: 302  SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
            +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V +ED + +  IE
Sbjct: 1906 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTEEDKRTLKDIE 1965

Query: 362  KLIEKKVDWLNGDLSSL 378
            +    K+D +  +++ L
Sbjct: 1966 QFYNTKIDEMPMNVADL 1982


>gi|170057770|ref|XP_001864629.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167877091|gb|EDS40474.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 798

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 122/388 (31%), Positives = 191/388 (49%), Gaps = 11/388 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L+  +   +  A Y  PTP+Q   IP+V+   DV   AQTG+GKTA+F++P+L 
Sbjct: 295 TFDDIELTEIIENNIKLANYDVPTPVQKYAIPIVMSGRDVMACAQTGSGKTAAFLVPILN 354

Query: 62  ILEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            + K       +       +             +K+     +   +L GG   + Q ++L
Sbjct: 355 QMYKHGVTPPPQNRPFNRRKQYPLGLVLAPTQSKKFCYRSRMRPCVLYGGNNTQEQMREL 414

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI----TSLVP 175
           +RG  +++ TPGR+ D   RGK+ ++NI  LV+DEADRMLDMGF P I+ I         
Sbjct: 415 DRGCHLVVATPGRLEDMIMRGKVGLDNIRFLVLDEADRMLDMGFEPQIRRIVEESKMPQT 474

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPK-----RIEVNTPSSTAETIEHCFVATYAQYSK 230
             RQTL+FSAT    +Q+++ +FL N       R+   + + T            +    
Sbjct: 475 GERQTLMFSATFPKAIQELASDFLHNYIFLAVGRVGSTSVNITQSIFWVEENDKRSHLLD 534

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             + ++      +     +IF   KK+   L   L      V +IHG+  Q+ R + L  
Sbjct: 535 LLSNIKDQNDGDEKDCLTLIFVETKKSADALEDFLYNYNHPVTSIHGDRTQKEREEALKF 594

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDIP+V HV NFD+P   E Y+HRIGRTGR G  G A +   
Sbjct: 595 FRSGRCPVLVATAVAARGLDIPNVKHVINFDLPAEVEEYVHRIGRTGRMGNLGTATSFFN 654

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            ++      + +L+ +    + G L  +
Sbjct: 655 DKNRNVATGLVRLLTETQQEIPGFLEDM 682


>gi|303278630|ref|XP_003058608.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459768|gb|EEH57063.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 471

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 118/372 (31%), Positives = 198/372 (53%), Gaps = 9/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L+ K++  +    Y KPTPIQ + IP++L   DV G A+TG+GKTA+F +PM+ 
Sbjct: 47  SFEDMMLNAKILLDIRFHEYDKPTPIQAQAIPIILSGRDVLGCAETGSGKTAAFSIPMIQ 106

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
               +    R   P  +++ PTRELA Q+    + + ++       +++GG     Q   
Sbjct: 107 HCLEQDPIKRGDGPFAIVMAPTRELAQQIEKEAKVFSRSSKGFKTTIVVGGTNMSDQRSD 166

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G +V + TPGR++DH ++G   +  + ++++DEADRMLDMGF P I+ +   +P   
Sbjct: 167 LRQGVEVCVATPGRLIDHLHQGNTNLGRVSLVILDEADRMLDMGFEPQIREVMQNLPTPH 226

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC------FVATYAQYSKKC 232
           QTLLFSATM  E++ ++ ++L  P +++V   S     +                     
Sbjct: 227 QTLLFSATMPAEVESLAADYLNKPVKVKVGAVSVPTANVAQHLEKLVDAQKVDRLCELLL 286

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
               +  +   ++   ++F  +K     +   L  +G S  A HG   Q+ R   LS++K
Sbjct: 287 EEKAEAEKFGGSLPMTVVFVERKARADEVMELLNAEGVSAAAFHGGRSQQEREAALSDYK 346

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++ A+D+AARGLD+  + HV N D+P   E+Y+HR+GRTGRAG  G+A +     
Sbjct: 347 NGKCSVLCATDVAARGLDVKGIAHVVNLDMPRMFEDYVHRVGRTGRAGMTGRATSFYTDR 406

Query: 353 DIKHIDAIEKLI 364
           D   +  +++ +
Sbjct: 407 DSYIVAQVKRAL 418


>gi|18416493|ref|NP_568245.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|186522075|ref|NP_568244.2| ATP binding / ATP-dependent helicase/ helicase/ nucleic acid
           binding [Arabidopsis thaliana]
 gi|108861899|sp|Q9LFN6|RH56_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 56
 gi|322510107|sp|Q56XG6|RH15_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 15
 gi|14190381|gb|AAK55671.1|AF378868_1 AT5g11200/F2I11_90 [Arabidopsis thaliana]
 gi|15450405|gb|AAK96496.1| AT5g11170/F2I11_60 [Arabidopsis thaliana]
 gi|16323360|gb|AAL15393.1| AT5g11200/F2I11_90 [Arabidopsis thaliana]
 gi|24111365|gb|AAN46806.1| At5g11170/F2I11_60 [Arabidopsis thaliana]
 gi|110740954|dbj|BAE98572.1| DEAD BOX RNA helicase RH15 - like protein [Arabidopsis thaliana]
 gi|332004259|gb|AED91642.1| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]
 gi|332004262|gb|AED91645.1| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]
          Length = 427

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 161/376 (42%), Gaps = 3/376 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D+G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 48  FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V                     F  Y  +  ++V      I       K E  
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECP 167

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +     +   L N    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 168 HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  I V+  +              ++  K        L   
Sbjct: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNR--KLNDLLDA 285

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L +  F    IH  + Q  R+    +FKEG  +++VA+
Sbjct: 286 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVAT 345

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDAIE 361
           DL  RG+DI  V  V N+D+P+ A+ Y+HR+GR GR G  G A T V +  D + ++ ++
Sbjct: 346 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQ 405

Query: 362 KLIEKKVDWLNGDLSS 377
           +  E  +  L   + +
Sbjct: 406 ERFEVDIKELPEQIDT 421


>gi|8953382|emb|CAB96655.1| DEAD BOX RNA helicase RH15 [Arabidopsis thaliana]
          Length = 427

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 161/376 (42%), Gaps = 3/376 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D+G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 48  FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V                     F  Y  +  ++V      I       K E  
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECP 167

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +     +   L N    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 168 HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  I V+  +              ++  K        L   
Sbjct: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNR--KLNDLLDA 285

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L +  F    IH  + Q  R+    +FKEG  +++VA+
Sbjct: 286 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVAT 345

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDAIE 361
           DL  RG+DI  V  V N+D+P+ A+ Y+HR+GR GR G  G A T V +  D + ++ ++
Sbjct: 346 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQ 405

Query: 362 KLIEKKVDWLNGDLSS 377
           +  E  +  L   + +
Sbjct: 406 ERFEVDIKELPEQIDT 421


>gi|323335026|gb|EGA76316.1| Dbp1p [Saccharomyces cerevisiae Vin13]
          Length = 617

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 138/395 (34%), Positives = 210/395 (53%), Gaps = 19/395 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF+   L   ++  +  A + KPTP+Q  +IP+V +  D+   AQTG+GKT  F+ P+ 
Sbjct: 154 LDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLF 213

Query: 61  TILEKG------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
           T L +              +R   P  L+L PTRELA Q+ +   K+     +   ++ G
Sbjct: 214 TELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYG 273

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G P   Q ++++RG D+L+ TPGR+ D   RGK+ + NI+ LV+DEADRMLDMGF P I+
Sbjct: 274 GAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIR 333

Query: 169 NITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           +I           RQTL+FSAT   ++Q ++ +FL N   + V    ST+E I    +  
Sbjct: 334 HIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYV 393

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                K   L     + +      +IF   K+    L   L  Q F   AIHG+  Q  R
Sbjct: 394 DDMDKKSALLDLLSAEHKG---LTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAER 450

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + LS FK     ++VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G 
Sbjct: 451 ERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGV 510

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           A +     +   +  + +++ +    +   LS L+
Sbjct: 511 ATSFFNSNNQNIVKGLMEILNEANQEVPTFLSDLS 545


>gi|237732562|ref|ZP_04563043.1| ATP-dependent RNA helicase SrmB [Citrobacter sp. 30_2]
 gi|226908101|gb|EEH94019.1| ATP-dependent RNA helicase SrmB [Citrobacter sp. 30_2]
          Length = 442

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 141/440 (32%), Positives = 221/440 (50%), Gaps = 6/440 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ A+ + G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP + 
Sbjct: 5   TFSELELDESLLDALQEKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVA++  +  KN +L VA + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVAEHARELAKNTHLDVATITGGVAYMNHMEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +        + +E L++DEADRMLDMGF   I++I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCHAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT   D ++  +E  L++P  +  +  +   + I   +        K        L
Sbjct: 185 MLFSATLEGDAIKDFAERLLEDPVEVSADPSTRERKKIHQFYYRADDIEHKTAM--LIHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      I+F  +++ V  L   L + G + C + G + Q  R + +    +G + ++
Sbjct: 243 LKQPEATRSIVFVRKRERVHELAGWLRQAGINNCYLEGEMVQNKRNEAIKRLTDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIPDV HVFNFD+P   + Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDAYLHRIGRTGRAGRKGTAISLVEAHDHLLLGK 362

Query: 360 IEKLIEKKVDWLNGDL--SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             + I++ +     D    +   P EK +              +       R K      
Sbjct: 363 ASRYIDEPLKARVIDELRPTTRAPSEKSNGKPSKKVLAKRAEKKAKEKEKPRVKKRHRDA 422

Query: 418 SHIPLKESEKISKLQQDIQE 437
            +I  +     +  QQ  +E
Sbjct: 423 KNIGKRRKPSGAATQQSDKE 442


>gi|190407839|gb|EDV11104.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
          Length = 617

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 138/395 (34%), Positives = 210/395 (53%), Gaps = 19/395 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF+   L   ++  +  A + KPTP+Q  +IP+V +  D+   AQTG+GKT  F+ P+ 
Sbjct: 154 LDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLF 213

Query: 61  TILEKG------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
           T L +              +R   P  L+L PTRELA Q+ +   K+     +   ++ G
Sbjct: 214 TELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYG 273

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G P   Q ++++RG D+L+ TPGR+ D   RGK+ + NI+ LV+DEADRMLDMGF P I+
Sbjct: 274 GAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIR 333

Query: 169 NITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           +I           RQTL+FSAT   ++Q ++ +FL N   + V    ST+E I    +  
Sbjct: 334 HIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYV 393

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                K   L     + +      +IF   K+    L   L  Q F   AIHG+  Q  R
Sbjct: 394 DDMDKKSALLDLLSAEHKG---LTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAER 450

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + LS FK     ++VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G 
Sbjct: 451 ERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGV 510

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           A +     +   +  + +++ +    +   LS L+
Sbjct: 511 ATSFFNSNNQNIVKGLMEILNEANQEVPTFLSDLS 545


>gi|160380607|sp|A6ZWD3|DBP1_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP1; AltName: Full=DEAD
           box protein 1; AltName: Full=Helicase CA1
 gi|151942679|gb|EDN61025.1| DEAD box protein [Saccharomyces cerevisiae YJM789]
          Length = 617

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 138/395 (34%), Positives = 210/395 (53%), Gaps = 19/395 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF+   L   ++  +  A + KPTP+Q  +IP+V +  D+   AQTG+GKT  F+ P+ 
Sbjct: 154 LDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLF 213

Query: 61  TILEKG------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
           T L +              +R   P  L+L PTRELA Q+ +   K+     +   ++ G
Sbjct: 214 TELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYG 273

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G P   Q ++++RG D+L+ TPGR+ D   RGK+ + NI+ LV+DEADRMLDMGF P I+
Sbjct: 274 GAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIR 333

Query: 169 NITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           +I           RQTL+FSAT   ++Q ++ +FL N   + V    ST+E I    +  
Sbjct: 334 HIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYV 393

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                K   L     + +      +IF   K+    L   L  Q F   AIHG+  Q  R
Sbjct: 394 DDMDKKSALLDLLSAEHKG---LTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAER 450

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + LS FK     ++VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G 
Sbjct: 451 ERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGV 510

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           A +     +   +  + +++ +    +   LS L+
Sbjct: 511 ATSFFNSNNQNIVKGLMEILNEANQEVPTFLSDLS 545


>gi|3641|emb|CAA39465.1| DBP1 [Saccharomyces cerevisiae]
          Length = 618

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 138/395 (34%), Positives = 210/395 (53%), Gaps = 19/395 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF+   L   ++  +  A + KPTP+Q  +IP+V +  D+   AQTG+GKT  F+ P+ 
Sbjct: 155 LDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLF 214

Query: 61  TILEKG------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
           T L +              +R   P  L+L PTRELA Q+ +   K+     +   ++ G
Sbjct: 215 TELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYG 274

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G P   Q ++++RG D+L+ TPGR+ D   RGK+ + NI+ LV+DEADRMLDMGF P I+
Sbjct: 275 GAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIR 334

Query: 169 NITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           +I           RQTL+FSAT   ++Q ++ +FL N   + V    ST+E I    +  
Sbjct: 335 HIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYV 394

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                K   L     + +      +IF   K+    L   L  Q F   AIHG+  Q  R
Sbjct: 395 DDMDKKSALLDLLSAEHKG---LTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAER 451

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + LS FK     ++VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G 
Sbjct: 452 ERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGV 511

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           A +     +   +  + +++ +    +   LS L+
Sbjct: 512 ATSFFNSNNQNIVKGLMEILNEANQEVPTFLSDLS 546


>gi|6325138|ref|NP_015206.1| Dbp1p [Saccharomyces cerevisiae S288c]
 gi|1706311|sp|P24784|DBP1_YEAST RecName: Full=ATP-dependent RNA helicase DBP1; AltName: Full=DEAD
           box protein 1; AltName: Full=Helicase CA1
 gi|1163095|gb|AAB68243.1| Dbp1p: putative ATP-dependent DEAD box RNA helicase [Saccharomyces
           cerevisiae]
 gi|256274187|gb|EEU09095.1| Dbp1p [Saccharomyces cerevisiae JAY291]
 gi|259150039|emb|CAY86842.1| Dbp1p [Saccharomyces cerevisiae EC1118]
 gi|285815423|tpg|DAA11315.1| TPA: Dbp1p [Saccharomyces cerevisiae S288c]
 gi|323346178|gb|EGA80468.1| Dbp1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 617

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 138/395 (34%), Positives = 210/395 (53%), Gaps = 19/395 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF+   L   ++  +  A + KPTP+Q  +IP+V +  D+   AQTG+GKT  F+ P+ 
Sbjct: 154 LDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLF 213

Query: 61  TILEKG------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
           T L +              +R   P  L+L PTRELA Q+ +   K+     +   ++ G
Sbjct: 214 TELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYG 273

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G P   Q ++++RG D+L+ TPGR+ D   RGK+ + NI+ LV+DEADRMLDMGF P I+
Sbjct: 274 GAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIR 333

Query: 169 NITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           +I           RQTL+FSAT   ++Q ++ +FL N   + V    ST+E I    +  
Sbjct: 334 HIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYV 393

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                K   L     + +      +IF   K+    L   L  Q F   AIHG+  Q  R
Sbjct: 394 DDMDKKSALLDLLSAEHKG---LTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAER 450

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + LS FK     ++VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G 
Sbjct: 451 ERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGV 510

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           A +     +   +  + +++ +    +   LS L+
Sbjct: 511 ATSFFNSNNQNIVKGLMEILNEANQEVPTFLSDLS 545


>gi|269123479|ref|YP_003306056.1| DEAD/DEAH box helicase domain-containing protein [Streptobacillus
           moniliformis DSM 12112]
 gi|268314805|gb|ACZ01179.1| DEAD/DEAH box helicase domain protein [Streptobacillus moniliformis
           DSM 12112]
          Length = 543

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 129/390 (33%), Positives = 211/390 (54%), Gaps = 9/390 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           M+F D  LS +++ A+    +V P+ IQ   IP +L+    + G AQTGTGKTA+F +P+
Sbjct: 1   MNFKDYNLSNEMLEALEKKRFVSPSEIQALVIPELLKEETHLIGQAQTGTGKTAAFSIPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  +       +  + LIL PTRELA QV+D          + +  + GG   E Q K L
Sbjct: 61  LEKIIP----TKKVKALILAPTRELANQVSDEIYSLKGKKEVKILAVYGGASIENQIKNL 116

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G D+++ TPGR++D  N+G L +N +E  V+DEAD ML+MGFI  I+ I       ++
Sbjct: 117 KKGVDIVVGTPGRVIDMINKGALKLNELEYFVLDEADEMLNMGFIEDIELILEKTNEDKK 176

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSAT+   +  +++ F+   K ++V     T    E  +     +   +        
Sbjct: 177 MLFFSATIPKPILAIAKRFMPEHKILKVQKKELTTHLTEQIYFEVRREDKFEALCRVLDY 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +       GI+FC  K  V  + + L+ + +   AIHG+I Q  R K L  FK   + ++
Sbjct: 237 KPDFY---GIVFCRTKSEVDEVTNKLKARNYDAEAIHGDITQGLREKALDLFKNKILNIL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ ++ HV N+ +P  +++Y+HRIGRTGRAG  G A T V  ++ + +  
Sbjct: 294 VATDVAARGIDVSNLTHVINYSIPQESDSYVHRIGRTGRAGNKGIAITFVTPQESRKLAQ 353

Query: 360 IEKLIEKKVDWLN-GDLSSLNPPLEKIDIA 388
           I++  +  +   N  ++  +    E++ IA
Sbjct: 354 IKRETKSDIKKENIPNVEDIINAKEELLIA 383


>gi|224587698|gb|ACN58701.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
          Length = 422

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 163/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 41  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQ 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY       V      I  +    K    
Sbjct: 101 IEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPTVKAAVFFGGLSIKKDEDVLKKNCP 160

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L N    ++ +    +  +     +Q+I  L P  +Q ++
Sbjct: 161 HIVVGTPGRILALIRNKTLNLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMM 220

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 221 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDL--LDV 278

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  V L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 279 LEFNQVVIFVKSVQRCVALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 338

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 339 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKTLNDVQ 398

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 399 DRFEVNVAELPEEID 413


>gi|221221068|gb|ACM09195.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
 gi|223647064|gb|ACN10290.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
 gi|223672933|gb|ACN12648.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
          Length = 427

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 163/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY       V      I  +    K    
Sbjct: 106 IEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPTVKAAVFFGGLSIKKDEDVLKKNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L N    ++ +    +  +     +Q+I  L P  +Q ++
Sbjct: 166 HIVVGTPGRILALIRNKTLNLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  V L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCVALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKTLNDVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRFEVNVAELPEEID 418


>gi|213511506|ref|NP_001134851.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
 gi|209736554|gb|ACI69146.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
          Length = 427

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 163/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY       V      I  +    K    
Sbjct: 106 IEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPTVKAAVFFGGLSIKKDEDVLKKNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L N    ++ +    +  +     +Q+I  L P  +Q ++
Sbjct: 166 HIVVGTPGRILALIRNKTLNLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  V L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCVALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKTLNDVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRFEVNVAELPEEID 418


>gi|213514236|ref|NP_001133080.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
 gi|197631861|gb|ACH70654.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Salmo salar]
          Length = 427

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 163/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY       V      I  +    K    
Sbjct: 106 IEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPTVKAAVFFGGLSIKKDEDVLKKNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L N    ++ +    +  +     +Q+I  L P  +Q ++
Sbjct: 166 HIVVGTPGRILALIRNKTLNLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  V L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCVALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKTLNDVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRFEVNVAELPEEID 418


>gi|94556865|gb|AAY89069.2| vasa-like protein [Litopenaeus vannamei]
          Length = 703

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 130/432 (30%), Positives = 208/432 (48%), Gaps = 24/432 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P ++  ++ AGY  PTP+Q  TIP V+   D+   AQTG+GKTA+F+LPML 
Sbjct: 262 SFQSMNLRPLLLENIVKAGYGCPTPVQKYTIPNVMNGRDIMACAQTGSGKTAAFLLPMLH 321

Query: 62  ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +               P  L++ PTRELA Q+     K+  +      +  GG     Q
Sbjct: 322 YILDNNCPSNAFEEPAQPTGLVICPTRELAIQIMREARKFSHSSVAKCCVAYGGAAGFHQ 381

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF----IPYIQNIT 171
            K +  G  +L+ TPGR+LD   +GK++ ++++ LV+DEADRMLDMGF       I + T
Sbjct: 382 LKTIHSGCHILVATPGRLLDFLEKGKIVFSSLKYLVLDEADRMLDMGFLSSIKTVINHKT 441

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 R TL+FSAT   E+Q+++  FL N   + V T  +    ++   +       K 
Sbjct: 442 MTPTAERITLMFSATFPHEIQELASAFLNNYLFVVVGTVGAANTDVKQEVLCVPKFEKKA 501

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSN 290
             +              I+   ++K V +   +   ++ F    +HG+  Q  R + LS 
Sbjct: 502 KLVEMCEEILISADDEKILVFVEQKRVADFVGTYLCEKKFRATTMHGDRYQAQREQALSE 561

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ + ARGLDI  +G V N+D+P   + Y+HRIGRTGR G  G + +   
Sbjct: 562 FRTGVHNILVATAVTARGLDIKGIGVVVNYDLPKDIDEYVHRIGRTGRLGNRGLSISFYD 621

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR------KNNPIPQKS 403
            E D      + K++ +    +   L+      +K + + H           ++ I  K+
Sbjct: 622 DETDACLTKDLVKVLSEANQTIPDWLT------QKANASGHAQTYHGSGLFASSDIRSKN 675

Query: 404 TGFDRRKKNYSS 415
            G    +KN +S
Sbjct: 676 GGGRGWEKNQAS 687


>gi|91082293|ref|XP_973907.1| PREDICTED: similar to DEAD-box helicase Dbp80 [Tribolium castaneum]
 gi|270007465|gb|EFA03913.1| hypothetical protein TcasGA2_TC014047 [Tribolium castaneum]
          Length = 458

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 99/393 (25%), Positives = 172/393 (43%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  L L+P ++  V D G+  P+ IQ   +P +L     ++   AQ+GTGKTA+FVL M
Sbjct: 72  TFEALNLNPNLLKGVYDMGFNAPSKIQETALPTLLANPPQNLIAQAQSGTGKTAAFVLAM 131

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++     ++ P+ L L PT ELA Q  +      K                ++   L
Sbjct: 132 LSRVDAS---LKYPQVLCLSPTYELAIQTGEVAAHMAKFCPEIEMKYAVRGEEVSRGSHL 188

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             R   L      ++ +    +   G       I   +    Q
Sbjct: 189 TEHIIIGTPGKVLDWALKFRVFDLKKLTVFVLDEADVMIATQGHQDQCIRIHKNLGPNCQ 248

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSAT   ++ + +E  + +   I +     + + I+  +V       K  A+    +
Sbjct: 249 MMFFSATYDQQIMEFAEMIVPDSITIRLKREEESLDNIQQYYVKCSGPQEKYNAVT--NI 306

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   IIFC+ ++    L   + K G +V  + G++    R+ +L  F+ G  +++
Sbjct: 307 YGTVGVGQAIIFCHTRRTASWLAEKMSKDGHAVAVLTGDLTVEQRINVLDRFRSGQEKVL 366

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRA------ENYIHRIGRTGRAGRHGKAFTLVAKED 353
           + +++ +RG+D+  V  V NFD+P         + Y+HRIGRTGR G+ G A  LV  ++
Sbjct: 367 ITTNVLSRGIDVEQVTIVVNFDLPIDMQGKADCDTYLHRIGRTGRFGKQGIAINLVDSQE 426

Query: 354 IKHI-DAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
             +I   IEK   +K+ +LN D S     +EKI
Sbjct: 427 AMNICRDIEKHFNRKIHYLNADDSD---EIEKI 456


>gi|308510234|ref|XP_003117300.1| CRE-HEL-1 protein [Caenorhabditis remanei]
 gi|308242214|gb|EFO86166.1| CRE-HEL-1 protein [Caenorhabditis remanei]
          Length = 424

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 99/395 (25%), Positives = 169/395 (42%), Gaps = 13/395 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q + IP  +   DV   A++G GKTA FV+  L  
Sbjct: 42  FRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE     V +             ++  + F KY     + V      I  + +    +  
Sbjct: 102 LEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCP 161

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    +    L      ++ +    + D      +Q I  + P  +Q ++
Sbjct: 162 HIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDADMRRDVQEIVKMTPQQKQVMM 221

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  EL+ V + F+Q+P  + V+  +               +  K        L   
Sbjct: 222 FSATLPKELRAVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNR--KLLNLLDA 279

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    K    L   L +Q F   AIH  + Q  R+    +FK+   +++VA+
Sbjct: 280 LEFNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQSFKDFQKRILVAT 339

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           DL  RG+DI  V  VFN+D+P  +++Y+HR+ R GR G  G A T V+ E D K +++++
Sbjct: 340 DLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKTLNSVQ 399

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
              +  +  L           EKID++ +   R N
Sbjct: 400 DRFDISITELP----------EKIDVSTYIEGRTN 424


>gi|225707666|gb|ACO09679.1| ATP-dependent RNA helicase DDX39 [Osmerus mordax]
          Length = 427

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 165/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY       V      I  + +  K    
Sbjct: 106 IEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPTVKAAVFFGGMAIKKDEEVLKKSCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L N    ++ +    +  +     +Q+I  L P  +Q ++
Sbjct: 166 HIVVGTPGRILALSRNKTLSLKNAKHFVLDECDKMLEALDMRRDVQDIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ +++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  V L   L +Q F   AIH  ++Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCVALSQLLVEQNFPAIAIHRGMNQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKTLNDVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRFEVNVAELPEEID 418


>gi|124801418|ref|XP_001349688.1| DEAD/DEAH box helicase, putative [Plasmodium falciparum 3D7]
 gi|3845295|gb|AAC71961.1| DEAD/DEAH box helicase, putative [Plasmodium falciparum 3D7]
 gi|156072124|gb|ABU45413.1| DEAD-box helicase 2 [Plasmodium falciparum]
          Length = 562

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 115/372 (30%), Positives = 194/372 (52%), Gaps = 8/372 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL +  +++ ++ + G+ KPT IQ + +P    + D+ G+++TG+GKTA F++P+L
Sbjct: 156 VTFEDLNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPIL 215

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN-KKL 119
             L+  +        L++ PTREL  Q++ NF+  G N  + +  + GG+    Q+    
Sbjct: 216 QDLKVNKQSFY---ALVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSLNLA 272

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   ++      +    N     + N++ LV DEAD++L   F   I  +  ++P  R 
Sbjct: 273 KKPNVIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINKLLLILPPNRI 332

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATMT  + K+ +  L+NP ++EV+   ST  T+   ++       K        L
Sbjct: 333 TFLFSATMTKNVAKLKKACLKNPVKVEVSNKYSTVSTLIETYIFLPL---KYKYTYLSSL 389

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +N IIF N       L       G     +HG + Q  R+  L++FK     ++
Sbjct: 390 CFHYQTRNIIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNKYNIL 449

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++ + ARGLD+ D+  V NFD+    + YIHR+GRT RAGR GK+ T V + D+++  A
Sbjct: 450 ISTQVGARGLDLQDIKIVINFDIC-SCKEYIHRVGRTARAGRSGKSITFVTQYDVENFLA 508

Query: 360 IEKLIEKKVDWL 371
           IEK + KK+D  
Sbjct: 509 IEKQLNKKIDKF 520


>gi|332878110|ref|ZP_08445839.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332683848|gb|EGJ56716.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 582

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 125/358 (34%), Positives = 205/358 (57%), Gaps = 9/358 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLP 58
           M+ F  LGL   ++ A+ D G+  P+ IQ K IP +L+   D+  +AQTGTGKTA+F  P
Sbjct: 1   MNLFEQLGLDEPILRAITDMGFETPSEIQQKAIPTLLEDDTDMVALAQTGTGKTAAFGFP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNK 117
           +L +++      ++ + LIL PTREL  Q+A   + Y K       + + G    E Q +
Sbjct: 61  LLQLIDT---DSKLTQGLILSPTRELCLQIASELKNYAKYLPKVNVVAVYGGASIEEQAR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L++GA +++ TPGR+ D   R  + +++I   V+DEAD ML+MGF   I  I S  P  
Sbjct: 118 SLKKGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILSHTPKE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           + T LFSATM +E+ +++  F++ P  I V T +  + T++H     Y    +      +
Sbjct: 178 KSTWLFSATMPNEVARIARQFMRKPIEITVGTRNQASSTVQH---EYYVVNGRHRYQALK 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   +     ++FC  KK+   +   L + G++  A+HG++ Q  R  ++ +F+   IQ
Sbjct: 235 RLADANPDIFSVVFCRTKKDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++VA+D+AARG+D+ D+ HV ++ +P+  E Y HR GRTGRAG+ G +  LV K +++
Sbjct: 295 MLVATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVLVPKSELR 352


>gi|326433585|gb|EGD79155.1| helicase pitchoune [Salpingoeca sp. ATCC 50818]
          Length = 649

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 126/433 (29%), Positives = 214/433 (49%), Gaps = 18/433 (4%)

Query: 3   FADL--GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           F +L   +S   + A+   G+   T IQ KTIP +L   D+ G A+TG+GKT +F++P +
Sbjct: 172 FTNLADKVSEPTMKAIEGFGFTHMTEIQYKTIPFLLTGRDLLGAAKTGSGKTLAFLIPAV 231

Query: 61  TILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L + +   +     +IL PTRELA Q+        ++++ T  + IGG   +A+ ++L
Sbjct: 232 ERLRQLKFTPKNGTGCIILTPTRELAQQIYGVLISLLEHHHQTHGISIGGSDKKAEARRL 291

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G ++L+CTPGR+LDH        + +++L+IDEADR+L +GF   ++ I  L+P  RQ
Sbjct: 292 GNGVNILVCTPGRLLDHLQNTNFKFDRLQMLIIDEADRILQIGFEDTMRAIVRLIPQKRQ 351

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT T +++ ++   L+           +   T +          S +   L    
Sbjct: 352 TVLFSATQTRKVEDLARISLRGEPLYIGVDDKADIATADGIEQGYVICPSDQRFRLLYTF 411

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  +  ++F +   +V             V  IHG   Q  R +    F      ++
Sbjct: 412 LKKNLKRKLMVFFSSCDSVEFHLQFFNYVSLPVLGIHGRQKQAKRSRTFFEFCNAEQGIL 471

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKHID 358
           + +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R AGR G+A   +   +++ + 
Sbjct: 472 LCTDVAARGLDIPEVDWIIQYDAPDDPKEYIHRVGRTARGAGRKGRALLFLLPTEVEFLK 531

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
               L+E KV      L+    P +KI   Q  + +    I +KS  F  RK   S  +S
Sbjct: 532 Y---LMENKVP-----LNEYEFPKDKIANVQSKYYQ----IMEKSYFF--RKLAISGFRS 577

Query: 419 HIPLKESEKISKL 431
           ++    +  +  +
Sbjct: 578 YVHAYAAHSLKAV 590


>gi|195328469|ref|XP_002030937.1| GM24308 [Drosophila sechellia]
 gi|194119880|gb|EDW41923.1| GM24308 [Drosophila sechellia]
          Length = 592

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 119/458 (25%), Positives = 205/458 (44%), Gaps = 32/458 (6%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           D  + P++   +L   + +PTPIQ++ +P++LQR  +   A TG+GKT +F+ P++  L 
Sbjct: 123 DFKMLPRLQQNLLSRNFDRPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIIDGLR 182

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNKKLER 121
               +    R L+L PTRELA Q+     +  +   L    +              K   
Sbjct: 183 V--HKTTGLRALVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECKQRY 240

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----ITSLVPFT 177
              V      R L       L ++++E  V+DEADR+++ G   + +       +    T
Sbjct: 241 DILVSTPNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAACSHPT 300

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +    FSAT T  + K +   L+N  RI +   +S  ET++   +   ++  K  A+   
Sbjct: 301 KCVSFFSATYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGKLVAMRDL 360

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + Q        ++F   K+    L   L   G +V  IH       R   +  F+EG+I 
Sbjct: 361 VRQGLQPP--VLVFVQSKERAKQLFEELLYDGINVDVIHAEKSHHQRDNCVRAFREGSIW 418

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ ++L  RG+D   V  V N+D P    +YIHRIGRTGRAGR G+A T   +ED  ++
Sbjct: 419 VLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQEDTSNL 478

Query: 358 DAIEKLIE-------------KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
            +I  +I+             KKV      + +   PL++ DI+          +  KS 
Sbjct: 479 RSIALIIKNSGCTVPEYMLQMKKVRKSEAKMRA-KKPLDREDISTKIRPETKGDVKHKSV 537

Query: 405 GFDRRK------KNYSSQKSHIPLKESEKISKLQQDIQ 436
              + +      KN    +  +  K+ +K+S ++ +I+
Sbjct: 538 KLKKVEKTDKILKNRKGNEKDLKTKQ-KKLSNIKAEIK 574


>gi|307729303|ref|YP_003906527.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307583838|gb|ADN57236.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
          Length = 530

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 140/390 (35%), Positives = 212/390 (54%), Gaps = 24/390 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLS  VV A+  AGY  PTP+Q + +P  +   D+   + TG+GKTA+F+LP + 
Sbjct: 49  TFASLGLSADVVSALTAAGYQNPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 108

Query: 62  ILEK---------------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN 100
              +                         V  P  L+L PTRELA QV      YGK+  
Sbjct: 109 RFSQLQKAQASQPREPRPADGGRGRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLK 168

Query: 101 L-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159
                 ++GG+ +  Q   L +  ++L+ TPGR++DH  RG++ ++ ++ILV+DEADRML
Sbjct: 169 RLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRML 228

Query: 160 DMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
           DMGFI  I+ I +  P TRQT+LFSAT+  ++  ++   L++P+RIE+         I  
Sbjct: 229 DMGFIEDIETIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRTNIAQ 288

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                  +  K    L   L     +   I+F   K +   L   L   GF   A+HG++
Sbjct: 289 TVHYVDDRDHKDR--LLDHLLRDAGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDL 346

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTGRA
Sbjct: 347 PQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRA 406

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           GR G A +LV   +   +  IE+ +   + 
Sbjct: 407 GRSGIAVSLVHHAEQGALKRIERFVRTPLP 436


>gi|225682788|gb|EEH21072.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Paracoccidioides
            brasiliensis Pb03]
          Length = 1203

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 135/482 (28%), Positives = 224/482 (46%), Gaps = 19/482 (3%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
             ++  GL  + +  +    Y  PT IQ + IP ++   DV G+A+TG+GKT +F+LPM  
Sbjct: 579  KWSQCGLGVQTLDVIRKLNYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFR 638

Query: 62   ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++  R    +  P  LI+ PTRELA Q+    + + K  NL      GG P + Q  +L
Sbjct: 639  HIKDQRPLENMEGPIGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAEL 698

Query: 120  ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +RGA++++CTPGR++D           +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 699  KRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNVRP 758

Query: 177  TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC---A 233
             RQT+LFSAT    ++ ++   L  P  I V   S  A  I                   
Sbjct: 759  QRQTVLFSATFPRNMEALARKTLTKPVEIVVGGRSVVAPEITQIVEVRNEDTKFVRLLAL 818

Query: 234  LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L        +     +IF ++++    L   L  +G+   +IHG  DQ  R   +++FK 
Sbjct: 819  LGDLYADDNNEDARTLIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIADFKA 878

Query: 294  GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
            G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + +  
Sbjct: 879  GVFPILIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEVQ 938

Query: 354  IKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARK-------NNPIPQKSTG 405
             ++   I K +++    +   +  + N  +EK+   +   +              ++   
Sbjct: 939  ERYSVDISKALKQSGQPVPEAVQKMVNSFIEKVKAGKEKASGSGFGGKGLERLDQERDAA 998

Query: 406  FDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR---GKLN 462
             +R +K Y + +     ++ +K  K +    +  +         P   +PK     GK+ 
Sbjct: 999  RNRERKTYKTGEEGEEEEKEDKKDKKEDIFSKAASAVQAASIPAPTPGVPKGIDLDGKIT 1058

Query: 463  DK 464
              
Sbjct: 1059 VH 1060


>gi|321249945|ref|XP_003191631.1| pre-mRNA splicing factor RNA helicase PRP28 [Cryptococcus gattii
           WM276]
 gi|317458098|gb|ADV19844.1| Pre-mRNA splicing factor RNA helicase PRP28, putative [Cryptococcus
           gattii WM276]
          Length = 737

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 128/427 (29%), Positives = 212/427 (49%), Gaps = 33/427 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ +  +  +++  + + GY +P+PIQ + IP+ +Q  D+ G+A+TG+GKTA+FV+PML 
Sbjct: 316 NWRESAIPSQILDIIEEIGYKEPSPIQRQAIPIGMQNRDLIGVAKTGSGKTAAFVIPMLD 375

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +          R   P  LIL PTRELA Q+     K+          ++GG   E Q 
Sbjct: 376 YIGHLPPLNDDNRHLGPYALILAPTRELAQQIEAETRKFAIPLGYKCVSIVGGRSVEEQQ 435

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS---- 172
             L  GA+++I TPGR+ D  ++  L+M+    +V+DEADRM+D+GF   +  I      
Sbjct: 436 FALRDGAEIIIATPGRLKDMVDKSILVMSQCRYVVMDEADRMVDLGFEVDLNFILDSMPA 495

Query: 173 -----------------LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215
                                 R T LFSATM   +++++  +L  P  + +       +
Sbjct: 496 TFVKPDDAVALQPTTEGDWQGWRVTTLFSATMPPAVERLARKYLIKPATVVIGNAGEAVD 555

Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
           T+    V       KK A L ++L++       I+F NQKK    +   +++ G S   +
Sbjct: 556 TV-EQRVEFVHGDEKKKARLIEILRTIGLPPPMIVFVNQKKTADMVVKYVQQAGMSGVTL 614

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           H    Q  R   L   ++G I ++VA+DLA RG+D+PDV  V N+ + +  E Y+HRIGR
Sbjct: 615 HSGKSQEQREAALQALRDGEISVLVATDLAGRGIDVPDVSLVINWQMSDTIEKYVHRIGR 674

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           TGRAG+ G A T +  +D + +  +      +++     +S +NP L + + A+    R+
Sbjct: 675 TGRAGKTGVAITFLTNDDDEVMYDL------RIEVEKSKMSKMNPELARHEAARTRVTRE 728

Query: 396 NNPIPQK 402
                  
Sbjct: 729 MKRKRDD 735


>gi|256379849|ref|YP_003103509.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
 gi|255924152|gb|ACU39663.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
          Length = 501

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 131/359 (36%), Positives = 197/359 (54%), Gaps = 5/359 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++LGL+ ++V A+  AG  +P PIQ  T+P  L   D+ G  QTG+GKT +F L +L+
Sbjct: 55  SFSELGLADELVRALATAGITEPFPIQAATLPDSLAGRDLLGRGQTGSGKTLAFGLALLS 114

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L  GRA+  MPR L+L PTRELA QV +    + +   L    ++GG  F  Q   L R
Sbjct: 115 RLAGGRAKPHMPRALVLVPTRELAMQVEEALSPFARALGLWCRTVVGGTSFPRQIDALRR 174

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+LI TPGR+ DH  +G   ++ +    +DEAD+M DMGF+P ++ I  L P   Q L
Sbjct: 175 GVDLLIATPGRLSDHVRQGTADLSEVMFTALDEADQMADMGFMPQVRAILDLTPENGQRL 234

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ K+   +L +P    V  P+ +  T+EH  +   A+  +           
Sbjct: 235 LFSATLDGDVDKLVRQYLHDPVVHSVAPPTGSVTTMEHHLLFVSAEDKQSVVTEVA---- 290

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K +V  L   L   G    A+HG   Q +R ++L  F+EGT  +++A
Sbjct: 291 -AREGRTIMFVRTKHHVDRLAKKLRSMGVHAGALHGGKAQSARTRVLGQFREGTTPVLIA 349

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +D+AARG+ + DV  V + D P   ++Y+HR GRT RAG+ G   TLV  +  + +  +
Sbjct: 350 TDVAARGIHVDDVSLVVHVDPPADPKDYLHRAGRTARAGQSGTVVTLVTHDQRRAVQGL 408


>gi|91794299|ref|YP_563950.1| ATP-dependent RNA helicase DbpA [Shewanella denitrificans OS217]
 gi|91716301|gb|ABE56227.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 470

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 140/407 (34%), Positives = 227/407 (55%), Gaps = 10/407 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L  +++  +   GY   T IQ +++P +L   DV G  +TG+GKTA+F L +L  
Sbjct: 16  FSSLSLKTELLENLKTMGYESMTQIQAQSLPPILAGDDVIGQGKTGSGKTAAFGLGLLNK 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+  R R++   TL++ PTRELA QVA       +  +    L +  G+P   Q   LE 
Sbjct: 76  LDVKRFRIQ---TLVMCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQVGSLEH 132

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +R +L ++N+ +LV+DEADRML+MGF  +I  I    P  RQTL
Sbjct: 133 GAHIIVGTPGRIIDHLDRNRLDLSNVNMLVLDEADRMLEMGFQDHIDAIIEQTPRERQTL 192

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D+++ +++       +  +    ST + I         + +K      +LL  
Sbjct: 193 LFSATFPDQIKSIADEI---MYKPVMVKVESTHDAISIEQHFYQLEDNKSRLEALRLLLL 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  ++ ++FCN K+    +   L + GFSV A+HG+++QR R ++L  F   + +++VA
Sbjct: 250 SEQPESAVVFCNTKRETQQVADELAEFGFSVLALHGDLEQRDRDQMLLQFANQSARILVA 309

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  VFNF +   AE ++HRIGRTGRAG  G A++ +  +D   +  IE
Sbjct: 310 TDVAARGLDIDALDAVFNFHLAYDAEVHLHRIGRTGRAGSTGAAYSFIGHDDGYKVAMIE 369

Query: 362 KLIEKKV--DWLNG-DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           +++  ++  + L G ++ +  P    +   Q    +K    P    G
Sbjct: 370 EMLNIEIVTEALPGLNVLNKTPLAANMVTIQIEGGKKQKIRPGDIVG 416


>gi|322701026|gb|EFY92777.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Metarhizium
           acridum CQMa 102]
          Length = 712

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 120/431 (27%), Positives = 201/431 (46%), Gaps = 35/431 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + GL  +++  V   GY +PTPIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 272 SWEESGLPQRLLDIVDRVGYKEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLV 331

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +          +   P  LIL PTREL  Q+    +K+ +        ++GG   E Q 
Sbjct: 332 YISDLPPLTEVNKNDGPYALILAPTRELVQQIETEAKKFAEPLGFRCVSIVGGHSLEEQA 391

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GA++++ TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +P 
Sbjct: 392 FALRNGAEIIVATPGRLVDCIERRLLVLSQCCYIIMDEADRMIDLGFEESVNKILDALPV 451

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ--------- 227
           + +          +L K         ++  + T +                         
Sbjct: 452 SNEKPDTDDAENAQLMKSYLGSRDKYRQTMMYTATMPPLVERIAKKYLRRPATATIGNAG 511

Query: 228 ---------------YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
                            ++   LQ++L   +     I+F N K+N   +   ++  G+S 
Sbjct: 512 EAVDTVEQRVEFVSGEDRRKKRLQEILSKNEFAPPIIVFVNIKRNCDAVARDIKSMGWST 571

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
             +HG+  Q  R   L++ + G  Q++VA+DLA RG+D+PDV  V NF++    E+Y HR
Sbjct: 572 VTLHGSKTQEQREAALASVRSGATQVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHR 631

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T +  ED   +  + +++ K        +S +   L++ + AQ   
Sbjct: 632 IGRTGRAGKSGVAITFLGNEDADVMYDLRQMLSK------SSISKVPEELKRHEAAQSKP 685

Query: 393 ARKNNPIPQKS 403
            R      +  
Sbjct: 686 VRGGARREKDD 696


>gi|264679533|ref|YP_003279440.1| hypothetical protein CtCNB1_3398 [Comamonas testosteroni CNB-2]
 gi|262210046|gb|ACY34144.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 431

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 125/415 (30%), Positives = 196/415 (47%), Gaps = 12/415 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL  +++ A LD G    TPIQ + IP VL   D+   A TG+GKT +++LP+L
Sbjct: 1   MSFAPLGLRAELLDATLDLGLRDATPIQTEAIPAVLAGRDLWACAPTGSGKTMAYLLPLL 60

Query: 61  TIL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                      G  R      L+      L    + +             ++ GG+    
Sbjct: 61  QAWLAQKRSHTGFVRPLATLILVPTRELALQVHESLSDITRQLREQPRSRVVYGGVSINP 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  +L   AD L+ TPGR+LD      + +N ++ LV+DEADR+LD GF   +  + +L+
Sbjct: 121 QMMQLRGSADFLVATPGRLLDLVEHNAVRLNAVQHLVLDEADRLLDQGFAEELNRVLALL 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY------AQY 228
           P  RQTLLFSAT    ++ ++   L +P R++V+   +   +     ++         + 
Sbjct: 181 PGKRQTLLFSATFPQNVEALATRLLHDPVRVQVDADQAAEHSASPENISQRAIAVDGPRR 240

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           ++    L +  ++Q   +  ++F  ++     L   L K G      HG++ Q +R  +L
Sbjct: 241 TQLLRHLVKQGENQPEWERALVFVAKRHTAEMLADKLYKAGIYATTFHGDMSQGARKDVL 300

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             FK    QL++ +DLAARG+DI  +  V N+D+P    +YIHRIGRTGRAG  G A T 
Sbjct: 301 DQFKAKRWQLLITTDLAARGIDIAQLPTVINYDLPRSPADYIHRIGRTGRAGHAGCAITF 360

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           V+  D  H   I K  + ++D            +    +AQ  +       P K 
Sbjct: 361 VSPADTAHWKLICKRNQLEIDLEQIQGFEPTEAVPPPPVAQDGNGGIKGRRPSKK 415


>gi|41055604|ref|NP_957237.1| HLA-B associated transcript 1 [Danio rerio]
 gi|32766427|gb|AAH55240.1| HLA-B associated transcript 1 [Danio rerio]
 gi|126632630|emb|CAM56334.1| HLA-B associated transcript 1 [Danio rerio]
          Length = 435

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 93/375 (24%), Positives = 165/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 54  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 113

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY  +  + V      I  + +  K E  
Sbjct: 114 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKESP 173

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L +    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 174 HVVVGTPGRILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 233

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  I V+  +         +        K   L        
Sbjct: 234 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL--LDV 291

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 292 LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRAMPQDERLARYQQFKDFQRRILVAT 351

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V   FN+D+P  ++ Y+HR+ R GR G  G A T V+ E D + ++ ++
Sbjct: 352 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDARTLNDVQ 411

Query: 362 KLIEKKVDWLNGDLS 376
              E  +  L  ++ 
Sbjct: 412 DRFEVNISELPEEID 426


>gi|302499800|ref|XP_003011895.1| hypothetical protein ARB_01875 [Arthroderma benhamiae CBS 112371]
 gi|291175449|gb|EFE31255.1| hypothetical protein ARB_01875 [Arthroderma benhamiae CBS 112371]
          Length = 814

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 133/359 (37%), Positives = 193/359 (53%), Gaps = 1/359 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L 
Sbjct: 298 SFQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIVPILE 357

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++
Sbjct: 358 RLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKK 417

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 418 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKSRQT 477

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+ + K+    L  P R+ V++   T  T+   FV        K       L 
Sbjct: 478 MLFSATMTNSVDKLIRVGLNKPVRLMVDSKKQTVGTLVQEFVRLRPGREDKRLGYLMFLC 537

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F  QKK    +       G     +HG++ Q  R+K + +F++  +  ++
Sbjct: 538 KTVYTNRVIVFFRQKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVEDFRDAKVSYLL 597

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K +  
Sbjct: 598 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKE 656


>gi|225016981|ref|ZP_03706173.1| hypothetical protein CLOSTMETH_00902 [Clostridium methylpentosum
           DSM 5476]
 gi|224950247|gb|EEG31456.1| hypothetical protein CLOSTMETH_00902 [Clostridium methylpentosum
           DSM 5476]
          Length = 563

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 120/374 (32%), Positives = 209/374 (55%), Gaps = 7/374 (1%)

Query: 1   MD---FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           M+   FA L LS +   A+   G+   T IQ ++IPL+   +DV G +QTGTGKT +F +
Sbjct: 1   MNSIPFAQLNLSDETGQAIEAMGFDNATDIQAQSIPLIRAGYDVIGRSQTGTGKTVAFGV 60

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           P + +++    R +    ++           ++  +       +    + GG P + Q  
Sbjct: 61  PAVELIDTEELRNKTQVLILCPTRELAVQACSEIEKIAKYKRGVRAVDIYGGAPMDRQIM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L+RGA++++ TPGR++DH  R  L +++++++++DEAD ML+MGF   ++ I    P  
Sbjct: 121 RLKRGANIVVGTPGRVMDHLRRRTLKLDHLKMIILDEADEMLNMGFREDVETILKQTPDE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSATM   +  +++ + ++P+ IE+N    T + IE  F                
Sbjct: 181 RQTILFSATMPPAILALTKQYQKDPQLIEINRKQVTLDNIEQQFYEVPMGRK---MDALG 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++         IIFCN K+ V  +   L++ G+S   +HG++ Q  R K++ +FK G  +
Sbjct: 238 IILQYHDPALSIIFCNTKRMVDEVTAFLDRSGYSAEGLHGDMKQSQRTKVMDSFKRGRTK 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKH 356
           ++VA+D+AARG+D+ +V +V N+DVP   E Y+HRIGRTGRAG+ GKA T+ + +  +  
Sbjct: 298 ILVATDVAARGIDVNNVDYVINYDVPQNQEYYVHRIGRTGRAGKEGKAVTICSGRRQVDE 357

Query: 357 IDAIEKLIEKKVDW 370
           +  I ++ +  +  
Sbjct: 358 LYHIVRMTKSTIKR 371


>gi|281209095|gb|EFA83270.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 1070

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 128/366 (34%), Positives = 206/366 (56%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   +  A++  G+  PTPIQ KTIPL+L   DV  +A+TG+GKTA+FV+PM+  
Sbjct: 259 FQSMELHKTLFKAIVRKGFKVPTPIQRKTIPLILAGSDVVAMARTGSGKTAAFVVPMIQK 318

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +   +V   R +IL PTRELA Q     + +    NL   L++GG   E Q  +L R 
Sbjct: 319 LGEHSIKVGA-RAIILSPTRELAIQTYKVVKDFTYGSNLRSCLVVGGDSMEDQFAELARN 377

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR++ H     + ++ ++ +V DEADR+ +MGF   + +I S +   RQTLL
Sbjct: 378 PDIIVATPGRLVHHLQEVGMGLSTVQYIVFDEADRLFEMGFQQQLNDIVSKLSDNRQTLL 437

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L       L NP  + +++ +  +E +   F  T     K   LL  L +  
Sbjct: 438 FSATLPSMLVDFVRAGLTNPILVRLDSETKISENLALSF-YTIRHDEKLAVLLYLLKEVI 496

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  +  IIF   K +V  L   L++       IHG +D  +R   L+ F+   + +M+ +
Sbjct: 497 EDKQPTIIFTATKYHVEYLQIFLKQAKIDSTIIHGYLDPVARKINLAKFRSNNVSVMIVT 556

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP + +V NFD P + + ++HR+GR  RAGR G A++LV+ ++I ++  +  
Sbjct: 557 DIAARGIDIPLLDNVINFDFPPKEKIFVHRVGRVARAGRKGTAYSLVSPDEIPYMIDLHL 616

Query: 363 LIEKKV 368
            + +K+
Sbjct: 617 YLARKI 622


>gi|189188460|ref|XP_001930569.1| ATP-dependent RNA helicase DBP8 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187972175|gb|EDU39674.1| ATP-dependent RNA helicase DBP8 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 514

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 125/432 (28%), Positives = 204/432 (47%), Gaps = 25/432 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L ++P +V ++      +PT IQ   IP +L+  D  G ++TGTGKT +F +P+L
Sbjct: 84  LSFTSLNVAPWLVASLASMEIKRPTGIQASCIPEILKGKDCIGGSRTGTGKTVAFSVPIL 143

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               +          +I+ PTRELA Q+ +  +      ++   L+ GG    +Q   L 
Sbjct: 144 QKWSE---DPSGIFAVIVTPTRELAIQIYEQVKAISAPQSMKPILITGGSDQRSQAIALA 200

Query: 121 RGADVLICTPGRILDHFN----RGKLLMNNIEILVIDEADRMLDMG---FIPYIQNITSL 173
               V+I TPGR+ +H           +  ++ +V DEADR+L  G    +P ++   S+
Sbjct: 201 SRPHVVIATPGRLAEHIRTSGEDTICGLRRVKFVVFDEADRLLAPGKGSMLPDLETCLSV 260

Query: 174 VPFTRQTLL--FSATMTDELQKVSENFLQNPKRIEV----NTPSSTAETIEHCFVATYAQ 227
           +P         F+AT+T E+  +        +        +T                  
Sbjct: 261 LPPKESRQTLLFTATVTPEVMALKHQPRAPGRLPIFVSEVDTEDLAIPPRLQQKYLQTPV 320

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             K+C L   L    ++ K+ IIFCN+ K    L + L      V A+H  + Q  R+  
Sbjct: 321 THKECYLHVLLNTPVNSTKSVIIFCNRTKTATLLEYMLRLLDHRVTALHSGLKQSDRVSN 380

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L+ F+    +++VA+D+AARGLDIP+V  V NFDVP   ++YIHR+GRT RAGR G + T
Sbjct: 381 LARFRAQAARILVATDVAARGLDIPEVALVINFDVPRDPDDYIHRVGRTARAGRVGTSIT 440

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGD---------LSSLNPPLEKIDIAQHNHARKNNP 398
            + + D+  + AIE  + KK+D    +           +L P  EK   A  +     + 
Sbjct: 441 FIGQRDVDLVLAIETRVGKKMDEFEEEGVSVEGRVLRDALKPVTEKKREAMLSIEEGRDV 500

Query: 399 IPQKSTGFDRRK 410
           + ++ TG  +R+
Sbjct: 501 LGKRKTGMQKRR 512


>gi|170044624|ref|XP_001849941.1| ATP-dependent RNA helicase DRS1 [Culex quinquefasciatus]
 gi|167867695|gb|EDS31078.1| ATP-dependent RNA helicase DRS1 [Culex quinquefasciatus]
          Length = 807

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 143/445 (32%), Positives = 229/445 (51%), Gaps = 15/445 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   DVCG A TGTGKTA+++LP L 
Sbjct: 187 SFYQMNLSRPLMKAIGFLGYIYPTPIQAATIPIALMGRDVCGCAATGTGKTAAYMLPTLE 246

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L    +  +    + +L PTREL AQV    ++  +  ++ V + IGG+  +AQ   L 
Sbjct: 247 RLLYKPSAAQAVTRVLVLVPTRELGAQVYQVTKQLTQYTSIEVGIAIGGLDVKAQEAVLR 306

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D++I TPGR++DH         ++IE+L++DEADRMLD  F   ++ I      +RQ
Sbjct: 307 TNPDIVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIIQSCSKSRQ 366

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTD+++ ++   L  P ++ VN   + A  +   F+            +   L
Sbjct: 367 TMLFSATMTDQVKDLAAVSLSKPVKVFVNNNQTVAFNLRQEFIRIRESRDADREPILAAL 426

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + ++F   KK    L   L   G     +HG++ Q  R++ L  FK+  I ++
Sbjct: 427 ICRTFHDHCMVFVQTKKTAHRLRILLGLLGVKAGELHGDLTQSQRLESLKQFKDEQIDVL 486

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAG+ G + +L  + + K +  
Sbjct: 487 VATDVAARGLDISGVKTVINFVMPATMEHYIHRVGRTARAGKAGVSVSLAGELERKIVKD 546

Query: 360 IEK----------LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK-NNPIPQKSTGFDR 408
           I K          +  + V+     + +L   +E  ++ Q  HA K      Q+ +  + 
Sbjct: 547 IIKNAVNPVKNRIIPNEIVEKYRKKVQALEEEIE--NVLQEEHAEKLLRQTEQQLSKTEN 604

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQ 433
           + K  S+  S    + S +  + ++
Sbjct: 605 KLKGISNGPSREWFQNSHERHQEKE 629


>gi|331701287|ref|YP_004398246.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128630|gb|AEB73183.1| DEAD/DEAH box helicase domain protein [Lactobacillus buchneri NRRL
           B-30929]
          Length = 453

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 130/451 (28%), Positives = 215/451 (47%), Gaps = 13/451 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++  L P ++ AV +  +  PTP+Q K +P+++Q  DV G + TG+GKT +F+LP+  
Sbjct: 3   NFSEFNLKPFLLDAVKELNFSHPTPVQEKVMPVIMQGRDVVGQSATGSGKTHAFLLPIFN 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+  +  V+   T             A    K+      T A + G      + K    
Sbjct: 63  QLDPAKDEVQAVITTPSRELAYQIIDAAKQLAKHSPEPISTGAYIGGTDKARQEKKIQHE 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI D    G L ++    LVIDEAD  LDMGF+  + NI +      Q +
Sbjct: 123 QPQLVVGTPGRIWDLIQNGGLDVHTASQLVIDEADMTLDMGFLDVVDNIAASFGKHVQMM 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  ++    + ++ NP   E+   +  + TI++  ++T  Q   +         +
Sbjct: 183 VFSATIPQKINVFLKKYMVNPFIEEIPVSTIISPTIDNWLISTKGQDKNQLIYKLL---T 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  +IF N +K V  L   L+ QG  V  IHG +  R R +I+   K    Q +VA
Sbjct: 240 IGEPYLVLIFANTRKRVEELTEYLKGQGLKVAMIHGGLKPRERKQIMKRVKNLEFQFVVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVP-NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +DLAARG+DI  V  V N D+P    E +IHR+GRTGR G  G + TL + ++ K ++ +
Sbjct: 300 TDLAARGIDIEGVSDVINDDIPTEDLEFFIHRVGRTGRNGMSGTSITLYSPDEEKEVEEL 359

Query: 361 EKL-IEKKVDWL-NGDL-SSLNPPLEKIDIAQHNH------ARKNNPIPQKSTGFDRRKK 411
           E + I  K   L NG++  S +    K    +H+               +   G+ RR K
Sbjct: 360 EDMGIHFKPKALKNGEIVDSYDRNRRKTHRKKHDKLDPTMIGMIKKKKKKIKPGYKRRIK 419

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQENDADS 442
           N  ++K  +  + +++     +  Q  ++ S
Sbjct: 420 NTIARKDEMDRRVAKREEARAKRKQRKNSSS 450


>gi|302654026|ref|XP_003018826.1| hypothetical protein TRV_07145 [Trichophyton verrucosum HKI 0517]
 gi|291182505|gb|EFE38181.1| hypothetical protein TRV_07145 [Trichophyton verrucosum HKI 0517]
          Length = 814

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 133/359 (37%), Positives = 193/359 (53%), Gaps = 1/359 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L 
Sbjct: 298 SFQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIVPILE 357

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++
Sbjct: 358 RLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKK 417

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 418 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKSRQT 477

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+ + K+    L  P R+ V++   T  T+   FV        K       L 
Sbjct: 478 MLFSATMTNSVDKLIRVGLNKPVRLMVDSKKQTVGTLVQEFVRLRPGREDKRLGYLMFLC 537

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F  QKK    +       G     +HG++ Q  R+K + +F++  +  ++
Sbjct: 538 KTVYTNRVIVFFRQKKEAHRVRIVFGLMGLKAAELHGSMSQEQRIKSVEDFRDAKVSYLL 597

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K +  
Sbjct: 598 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKE 656


>gi|270007520|gb|EFA03968.1| hypothetical protein TcasGA2_TC014113 [Tribolium castaneum]
          Length = 482

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 133/377 (35%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 110 NFDDMNLKEELLRGIYAYGFEKPSAIQQRAIIPCVKGHDVIAQAQSGTGKTATFSISILQ 169

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G   +      IGG       +KLE 
Sbjct: 170 QIDTSLRE---CQALILAPTRELAQQIQKVVIALGDFMSAQCHACIGGTNVREDMRKLET 226

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L  N I++ V+DEAD ML  GF   I ++  ++    Q +
Sbjct: 227 GVHVVVGTPGRVYDMINRRSLRANFIKMFVLDEADEMLSRGFKDQIHDVFRMLNSDVQVI 286

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++  V+++F++NP RI V     T E I+  FV    +  K   L       
Sbjct: 287 LLSATMPADVLDVTKSFMRNPVRILVKKEELTLEGIKQFFVYVEREDWKLETLCDL--YD 344

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L  ++ K+ F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 345 TLSITQAVIFCNTRRKVDWLTENMHKRDFTVSAMHGDMEQRERDVIMRQFRTGSSRVLIT 404

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V +ED + +  IE
Sbjct: 405 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTEEDKRTLKDIE 464

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    K+D +  +++ L
Sbjct: 465 QFYNTKIDEMPMNVADL 481


>gi|226494636|ref|NP_001147596.1| pre-mRNA-processing ATP-dependent RNA helicase prp-5 [Zea mays]
 gi|195612416|gb|ACG28038.1| pre-mRNA-processing ATP-dependent RNA helicase prp-5 [Zea mays]
          Length = 768

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 144/380 (37%), Positives = 218/380 (57%), Gaps = 4/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D G    ++ A+    Y KPT IQ + +P+VL   D+ GIA+TG+GKTA+FVLPM+ 
Sbjct: 220 NFEDCGFPVPLMNAIAKQAYQKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIV 279

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       +   P  +I  PTRELA Q+    +K+ K YNL VA + GG+    Q K+L
Sbjct: 280 HIMDQPELEKEEGPIGVICAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKEL 339

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G +V+I TPGR++D      L M     LV+DEADRM D+GF P I++I   +   RQ
Sbjct: 340 KAGCEVVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPGRQ 399

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  ++++++   L +P R+ V       E I+       +   K   LL++L 
Sbjct: 400 TLLFSATMPYKVERLAREILTDPIRVTVGQVGGANEDIKQVVNVIPSDAEKMPWLLEKLP 459

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     ++F ++K  V  +   L ++GF + A+HG+ DQ SRM+ L  FK GT  ++
Sbjct: 460 GMIDDGD-VLVFASKKARVDEIERELNQRGFRIAALHGDKDQASRMETLQKFKSGTYHVL 518

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIKHID 358
           VA+D+AARGLDI  +  V NFD+    + +IHRIGRTGRAG + G A+TL+ +++ +   
Sbjct: 519 VATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEARFAG 578

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + + +      +  +L  L
Sbjct: 579 ELVQSLIAAGQDVPNELMDL 598


>gi|24666101|ref|NP_649009.1| CG5589 [Drosophila melanogaster]
 gi|7293941|gb|AAF49303.1| CG5589 [Drosophila melanogaster]
          Length = 594

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 124/480 (25%), Positives = 209/480 (43%), Gaps = 38/480 (7%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           D  + P++   +L   +  PTPIQ++ +P++LQR  +   A TG+GKT +F+ P++  L 
Sbjct: 123 DFKMLPRLQQNLLSRNFDHPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIINGLR 182

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNKKLER 121
               +    R L+L PTRELA Q+     +  +   L    +              K   
Sbjct: 183 A--HKTTGLRALVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECKQRY 240

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----ITSLVPFT 177
              V      R L       L ++++E  V+DEADR+++ G   + +       +    T
Sbjct: 241 DILVSTPNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAACSNPT 300

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +    FSAT T  + K +   L+N  RI +   +S  ET++   +   ++  K  A+   
Sbjct: 301 KCVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGKLVAIRDL 360

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + Q        ++F   K+    L   L   G +V  IH    Q  R   +  F+EG+I 
Sbjct: 361 VRQGLQPP--VLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVKAFREGSIW 418

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ ++L  RG+D   V  V N+D P    +YIHRIGRTGRAGR G+A T   +ED  ++
Sbjct: 419 VLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQEDTSNL 478

Query: 358 DAIEKLIE-------------KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
             I  +I+             KKV      + +   PL++ DI+             KST
Sbjct: 479 RGIALIIKNSGGTVPEYMLQMKKVRKSEAKMRA-KKPLDREDISTKIRPETKGDEKHKST 537

Query: 405 GFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
              +             ++ +EKI K ++  +++        GN+   + P  + K N +
Sbjct: 538 KLKK-------------VERTEKILKNRKGYEKDLNSKQKKLGNIKTELKPAGKRKGNVE 584


>gi|332162701|ref|YP_004299278.1| ATP-dependent RNA helicase SrmB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606806|emb|CBY28304.1| ATP-dependent RNA helicase SrmB [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666931|gb|ADZ43575.1| ATP-dependent RNA helicase SrmB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860494|emb|CBX70798.1| ATP-dependent RNA helicase srmB [Yersinia enterocolitica W22703]
          Length = 441

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 143/447 (31%), Positives = 234/447 (52%), Gaps = 16/447 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP + 
Sbjct: 5   NFSELDLDERLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K+  L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I++   + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT   + +++ +E  L  P  +E +      + I+  +        K        L
Sbjct: 185 LLFSATLEGEAIREFAERILTEPVELEADPSRRERKKIQQWYYRADNIEHKTAL--LVHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  ++  IIF   ++ V  L   L + G +   + G + Q  R + +    +G + ++
Sbjct: 243 LKQPEVQKSIIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDVASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHDHLLLGR 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK-KNYSSQKS 418
           I + +++ +      +  L P            + K+   P K     R++ K    +K+
Sbjct: 363 IGRYLKEPLK--PRVIDELRP-------TSKAPSEKSTGKPSKKVLAKRKELKEAGKEKT 413

Query: 419 HIPL--KESEKISKLQQDIQENDADSL 443
            + +  ++++ + K ++   + D  S+
Sbjct: 414 KVKVRHRDAKNVGKRRKPKDKPDTKSV 440


>gi|254515296|ref|ZP_05127357.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium NOR5-3]
 gi|219677539|gb|EED33904.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium NOR5-3]
          Length = 428

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 122/371 (32%), Positives = 189/371 (50%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F DL L P ++  + + G+   +PIQ + +P  LQ HD  G AQTGTGKTA+F++ +   
Sbjct: 47  FHDLDLHPTLMHGIAEIGFEYCSPIQAQVLPHTLQGHDAIGKAQTGTGKTAAFLITIFDD 106

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 +G   +  PR L++ PTREL  Q+A +    GK   L    LIGG+ ++ Q  +
Sbjct: 107 LLRNPHEGERFLGEPRALVIAPTRELVMQIAADAADLGKYTGLNTCTLIGGMDYQKQLNQ 166

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 D+++ TPGR++D   R  L+++ +E+LV+DEADRMLDMGFIP ++ I    P  
Sbjct: 167 LGREVVDLVVATPGRLIDFTGRRDLVLDQVEVLVLDEADRMLDMGFIPQVKRIVRQTPHK 226

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
                   + T   Q +     Q                 +      Y   S++   +  
Sbjct: 227 DYRQTLLFSAT-FTQDIINLSEQWTTDAVTVEIEPDHVATDSVDQRIYLASSEERFRILV 285

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   D   + I+F N++  V  L   L K   +   + G I Q  R K L  FK+G I 
Sbjct: 286 NLLRSDDATSVIVFANRRDQVRRLYERLRKASITCGMLSGEIAQAKRTKTLDQFKKGEIS 345

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A RG+ +  V HV N+++P   E+Y+HRIGRTGRAG  G + +  +++D   +
Sbjct: 346 VLVATDVAGRGIHVDGVSHVVNYNLPEDPEDYVHRIGRTGRAGASGTSISFASEDDAFLL 405

Query: 358 DAIEKLIEKKV 368
             +E L+   V
Sbjct: 406 PDLEALLGAPV 416


>gi|145610002|ref|XP_366730.2| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|152112305|sp|A4RBS3|SUB2_MAGO7 RecName: Full=ATP-dependent RNA helicase SUB2
 gi|145017381|gb|EDK01744.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 436

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 151/375 (40%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q   IP  +   D+   A++G GKTA FVL  L  
Sbjct: 54  FRDFLLKPELLRAIGDCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQ 113

Query: 63  LEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +E   G   V +         +        +         +           E    K  
Sbjct: 114 VEPVAGECSVLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFFGGTPIQKDAELLKNKET 173

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++           ++   L +    ++ +    +  +     +Q I    P  +Q 
Sbjct: 174 HPHIIVGTPGRLNALVRDKFLRLSSVRIFVLDECDKMLDQIDMRRDVQEIFRATPQQKQV 233

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++DE++ + + F+QNP    V+  +         +     +  K   L +    
Sbjct: 234 MMFSATLSDEIKPICKKFMQNPTEHYVDEDTKLTLHGLQQYFVALEEKEKNRKLNEL--L 291

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF         L   L +  F   A+H  + Q  R++    FKE   ++ V
Sbjct: 292 DDLQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICV 351

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+  RG+DI  +    N+D+P  A++Y+HR+GR GR G  G A + V  + D + + A
Sbjct: 352 ATDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRFGTKGLAVSFVTNDQDKEVLTA 411

Query: 360 IEKLIEKKVDWLNGD 374
           IEK  E  +     D
Sbjct: 412 IEKRFEVPIPEFPKD 426


>gi|83647394|ref|YP_435829.1| ATP-dependent RNA helicase DbpA [Hahella chejuensis KCTC 2396]
 gi|83635437|gb|ABC31404.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 493

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 138/405 (34%), Positives = 218/405 (53%), Gaps = 16/405 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P ++  +   GY   TPIQ +++P +L   DV    +TG+GKTA+F L +L  
Sbjct: 37  FSSLSLHPGLLQNLSTLGYHSMTPIQAQSLPSILAGKDVIAQGKTGSGKTAAFGLGLLNK 96

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    +    + L+L PTRELA QVA    +  +  +    L +  G+PF  Q   LE 
Sbjct: 97  LDI---KRFCVQALVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQIGSLEH 153

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ +H  +G L+++ +  LV+DEADRML+MGF   +  I   +P  RQTL
Sbjct: 154 GAHIVVGTPGRVEEHLRKGTLVLDQLHTLVLDEADRMLEMGFQAALDAIVEKMPAQRQTL 213

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  +++Q ++E  + NP  ++V +   + +           +       + +LL  
Sbjct: 214 LFSATYPNQIQSIAERVMLNPVMVKVES---SHDNASIQQYYYKVEGDTHRLEVLRLLLL 270

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ ++FCN K+    +   L   GFS  A+HG+++QR R + L  F   +  ++VA
Sbjct: 271 QYKPESTVVFCNTKRETQEVADMLVSHGFSAVALHGDLEQRDRDQTLVCFANKSASILVA 330

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V NF +    E ++HRIGRTGRAG  G A TL ++ ++  I  +E
Sbjct: 331 TDVAARGLDIDALDAVINFHIARDPEVHVHRIGRTGRAGASGVACTLFSESEMYKIGRLE 390

Query: 362 KLIEKKVDWLNGDLSSL------NPPLEKIDIAQHNHARKNNPIP 400
           +  E  V       +SL       PP+E + I   +  +K    P
Sbjct: 391 EYQEIIVSAEPAPATSLLKNLAYKPPMETLQI---DGGKKQKVRP 432


>gi|88856781|ref|ZP_01131435.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
 gi|88813949|gb|EAR23817.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
          Length = 499

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 129/394 (32%), Positives = 213/394 (54%), Gaps = 3/394 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L +   +V A+   G ++P PIQ +TIP+ L   D+ G A+TGTGKT  F LP+ 
Sbjct: 1   MTFSELNIDQDMVDALATKGILEPFPIQTQTIPMGLAGQDIIGQAKTGTGKTLGFGLPV- 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +   G       + LI+ PTREL  QVA++      N +  +A + GG  +E Q ++++
Sbjct: 60  -LQSLGINPEPGVKALIVVPTRELCVQVAEDLVLAASNRSTKIAAIYGGKAYEGQVEQIK 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGR+LD  ++  L + +I+++V+DEAD+MLD+GF+  I+ + +  P TR T
Sbjct: 119 DGAQVIVGTPGRLLDLASQRMLSLKDIKVMVLDEADKMLDLGFLADIEKLFAQTPPTRHT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +  ++  F  N       T      T ++     Y  ++     +   + 
Sbjct: 179 MLFSATMPGPIVALARRF-MNKPIHIRATDPDEGLTQKNIKHVVYRAHNLDKDEVIARIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     ++F   K+    L   L  +GF+  A+HG+++Q  R + ++ FK G   +++
Sbjct: 238 QSEGRGKTVVFTRTKRAAAKLVEELNDRGFNAAAVHGDLNQEQRERAMAAFKAGKKDILI 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV HV N  +P+  + Y+HR GRTGRAG+ G A T V   D+     I
Sbjct: 298 ATDVAARGIDVNDVTHVINHTIPDDHDTYLHRAGRTGRAGKTGVAVTFVDWADMLKWTHI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
            K ++  +       SS      ++DI +    R
Sbjct: 358 NKALDMGIPEPTETYSSSPHLYSELDIPEGTKGR 391


>gi|330811536|ref|YP_004355998.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379644|gb|AEA70994.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 487

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 130/389 (33%), Positives = 210/389 (53%), Gaps = 10/389 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ + +   L   D  G AQTGTGKTA+F++ ++T 
Sbjct: 100 FHDFKLAPELMHAIQDLGFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLISIITQ 159

Query: 63  ----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ-NK 117
                      +  PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q   
Sbjct: 160 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKH 219

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG + ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 220 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 279

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT T+++  +++ +  +P  +E+   +  +E +E    A       K    
Sbjct: 280 SERQTLLFSATFTEDVMNLAKQWTTDPAIVEIEAENVASENVEQHIYAVAGADKYKLLYN 339

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 340 L---VNDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 396

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 397 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSY 456

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
            + +IE L+ KK++        L P   K
Sbjct: 457 QLPSIEALLGKKINCETPPTHLLRPVERK 485


>gi|15603705|ref|NP_246779.1| ATP-dependent RNA helicase SrmB [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12722265|gb|AAK03924.1| SrmB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 442

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 131/366 (35%), Positives = 207/366 (56%), Gaps = 2/366 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F D  L+P ++ A+   GY +PT IQ +TIP  +++ DV G A TGTGKTA+F+LP + 
Sbjct: 5   TFQDFDLAPALLKALAKKGYTRPTAIQQETIPAAMEQRDVLGSAPTGTGKTAAFLLPAIQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVA+  E + +  NL++A + GG+ ++   +   
Sbjct: 65  HLLDYPRRKPGAPRILILTPTRELAMQVAEQAESFAEFTNLSIATITGGVAYQNHGEIFN 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ TPGR+L +         ++E+L+ DEADRML MGF    + I +   + +QT
Sbjct: 125 SNQDIVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL  V        + ++++   S  E  +      +A  ++    L     
Sbjct: 185 LLFSATLEGEL-LVDFASRLLTEPVQIDAEPSRRERKKIQQWYYHADSNEHKIKLLARFI 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++ +  GI+F  +++ V  L  +L K+G     + G + Q  R   +   K G + ++V
Sbjct: 244 DEEQVSRGIVFVRRREEVRELSETLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGIVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV HV NFD+P  A+ Y+HRIGRT RAG+ G A + V   D K +  I
Sbjct: 304 ATDVAARGIDIEDVSHVMNFDLPYSADTYLHRIGRTARAGKKGVAVSFVEAHDYKLLGKI 363

Query: 361 EKLIEK 366
           ++  ++
Sbjct: 364 KRYTQE 369


>gi|303288912|ref|XP_003063744.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454812|gb|EEH52117.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 577

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 125/391 (31%), Positives = 204/391 (52%), Gaps = 10/391 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L LS   +  +   GY   T +Q +TIP +L   DV G A+TG+GKT +F++P + 
Sbjct: 74  TFASLSLSKPTMAGIATMGYETMTEVQARTIPPLLAGRDVLGAARTGSGKTLAFLVPSVE 133

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   +   R     +IL PTRELA Q+ +  ++    ++ T  L+IGG    A+ +KL 
Sbjct: 134 LLYHAKFMPRNGAGVMILTPTRELALQIYNVTQQLMTKHSQTHGLIIGGANRRAEAEKLV 193

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNI-EILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G ++L+ TPGR+LDH    K    +  +I  +DEADRMLD+GF   ++ I  ++P  RQ
Sbjct: 194 KGVNLLVATPGRLLDHMQNTKGFTFSSLKIFCMDEADRMLDIGFEEEMRTIVKMIPKDRQ 253

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT T +++ ++   L++P  I V+   + +               K   LL    
Sbjct: 254 TMLFSATQTTKVEDLARLSLKSPTYIGVDDARAVSTATGVEQGYCVVPSEK-RFLLLFTF 312

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  ++F +   +V      L      V  IHG   Q+ R      F +    ++
Sbjct: 313 LKKNLKKKVMVFFSSCNSVKYHAELLNYIDIPVSDIHGKQKQQRRTTTFFEFCKAERGVL 372

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR--AGRHGKAFTLVAKEDIKHI 357
           + +D+AARGLDIPDV  +  FD P+  + YIHR+GRT R   GR G+A   +  E++  +
Sbjct: 373 LCTDVAARGLDIPDVDWIIQFDPPDDPKEYIHRVGRTARGTDGR-GRALLFLIPEELAFL 431

Query: 358 DAIEKLIEKKV---DWLNGDLSSLNPPLEKI 385
             + K  +  +   ++ N  ++++   LEK+
Sbjct: 432 KYL-KAAKVPLNEYEFPNKKIANVQSQLEKL 461


>gi|164662887|ref|XP_001732565.1| hypothetical protein MGL_0340 [Malassezia globosa CBS 7966]
 gi|159106468|gb|EDP45351.1| hypothetical protein MGL_0340 [Malassezia globosa CBS 7966]
          Length = 542

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 96/389 (24%), Positives = 171/389 (43%), Gaps = 7/389 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L+P    A+   G+   T +Q + IP +L   DV G AQTG+GKT +F++P + +
Sbjct: 38  FTALDLTPATSKALDAMGFKTMTEVQERCIPPLLAGKDVLGAAQTGSGKTLAFLIPAIEM 97

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVAD--NFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L++ + + R     I+       A        E           ++ G       +K  +
Sbjct: 98  LQRLKFKPRNGTGAIVISPTRELALQIFGVAKELMAHQSQTLGIIMGGANRKAEADKLQK 157

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++      +    N    +  N++ L+IDEADR+L++GF   ++ I  ++P   + 
Sbjct: 158 GVNLIIATPGRLLDHLQNTKGFVFTNLKTLIIDEADRILEIGFEDEMRQIVKILPQEHRQ 217

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSAT T ++Q ++   L+             A T+           S K  LL    
Sbjct: 218 TMLFSATQTTKVQDLARISLRPGPLYINVHEQMAASTVSKLEQGYVVCDSDKRFLLLFTF 277

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  I+F N   +V      L      V  +HG   Q+ R      F       +
Sbjct: 278 LKRNAGKKIIVFMNSCNSVKFHGELLNYIDVPVLDLHGKQKQQKRSNTFFEFCNAESGTL 337

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+AARGLDIP V  +  +D P+   +YIHR+GRT R G+HG++   +   ++  +  
Sbjct: 338 LCTDVAARGLDIPAVDWIIQYDPPDDPRDYIHRVGRTARGGKHGRSLLFLLPSELGFLRF 397

Query: 360 IEKLIEKKVDWL---NGDLSSLNPPLEKI 385
           + K+ +  ++        ++++   LEK+
Sbjct: 398 L-KVAKVPLNEYTFPPNKIANVQNQLEKL 425


>gi|8953379|emb|CAB96652.1| DEAD BOX RNA helicase RH15-like protein [Arabidopsis thaliana]
          Length = 435

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 161/376 (42%), Gaps = 3/376 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D+G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 48  FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V                     F  Y  +  ++V      I       K E  
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECP 167

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +     +   L N    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 168 HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  I V+  +              ++  K        L   
Sbjct: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTR--KLNDLLDA 285

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L +  F    IH  + Q  R+    +FKEG  +++VA+
Sbjct: 286 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVAT 345

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDAIE 361
           DL  RG+DI  V  V N+D+P+ A+ Y+HR+GR GR G  G A T V +  D + ++ ++
Sbjct: 346 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQ 405

Query: 362 KLIEKKVDWLNGDLSS 377
           +  E  +  L   + +
Sbjct: 406 ERFEVDIKELPEQIDT 421


>gi|326526777|dbj|BAK00777.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 731

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 133/424 (31%), Positives = 219/424 (51%), Gaps = 32/424 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ +  L  +++ A+   GY KP+PIQ+  IPL LQ+ DV GIA+TG+GKTA+FVLPML+
Sbjct: 311 NWPESKLGTELLRAIEKVGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLS 370

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + +            P  +++ PTRELA Q+ +   K+     + V  ++GG   E Q 
Sbjct: 371 YITRLPPISEDNEAEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQG 430

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY---------- 166
            K+ +G +V+I TPGR+LD   R   ++N    +V+DEADRM+DMGF P           
Sbjct: 431 FKIRQGCEVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 490

Query: 167 -------IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
                   +         R T +FSATM   +++++  +L+NP  + + T     +  + 
Sbjct: 491 SNLKPENEEEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGT---AGKATDL 547

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                      +     Q + +    K  I+FCN KK+  N    L+K GF V A+HG  
Sbjct: 548 ITQNVIMVKESEKMSRLQKILTDLGDKTAIVFCNTKKSADNRAKDLDKAGFRVTALHGGK 607

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q  R   L  F+     ++VA+D+A RG+DIPDV HV N+++P+  + Y HRIGRTGRA
Sbjct: 608 SQDQREISLDGFRNRRFNVLVATDVAGRGIDIPDVAHVINYEMPSSVDTYTHRIGRTGRA 667

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           G+ G A + +  ++      +++++ +         S + P L + + ++       +  
Sbjct: 668 GKKGLATSFLTLDNTDIFFDLKQMLTQS-------NSPVPPELARHEASKFKPGSVPDRP 720

Query: 400 PQKS 403
           P+++
Sbjct: 721 PRRN 724


>gi|283832032|ref|ZP_06351773.1| ATP-dependent RNA helicase SrmB [Citrobacter youngae ATCC 29220]
 gi|291071651|gb|EFE09760.1| ATP-dependent RNA helicase SrmB [Citrobacter youngae ATCC 29220]
          Length = 442

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 141/440 (32%), Positives = 221/440 (50%), Gaps = 6/440 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ A+ + G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP + 
Sbjct: 5   TFSELELDESLLDALQEKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVA++  +  KN +L VA + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVAEHARELAKNTHLDVATITGGVAYMNHMEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +        + +E L++DEADRMLDMGF   I++I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCHAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT   D ++  +E  L++P  +  +  +   + I   +        K        L
Sbjct: 185 MLFSATLEGDAIKDFAERLLEDPVEVSADPSTRERKKIHQFYYRADDIEHKTAM--LIHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      I+F  +++ V  L   L + G + C + G + Q  R + +    +G + ++
Sbjct: 243 LKQPEATRSIVFVRKRERVHELAGWLRQAGINNCYLEGEMVQNKRNEAIKRLTDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIPDV HVFNFD+P   + Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDAYLHRIGRTGRAGRKGTAISLVEAHDHLLLGK 362

Query: 360 IEKLIEKKVDWLNGDL--SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             + I++ +     D    +   P EK +              +       R K      
Sbjct: 363 ASRYIDEPLKARVIDELRPTTRAPSEKSNGKPSKKVLAKRAEKKAKEKEKPRVKKRHRDA 422

Query: 418 SHIPLKESEKISKLQQDIQE 437
            +I  +     +  QQ  +E
Sbjct: 423 KNIGKRRKPSGTATQQSDKE 442


>gi|227504305|ref|ZP_03934354.1| possible ATP-dependent RNA helicase [Corynebacterium striatum ATCC
           6940]
 gi|227198953|gb|EEI79001.1| possible ATP-dependent RNA helicase [Corynebacterium striatum ATCC
           6940]
          Length = 463

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 139/401 (34%), Positives = 209/401 (52%), Gaps = 9/401 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL  ++V  +   G  +P PIQ   IP  L   DV G   TG+GKT +F LP+LT
Sbjct: 3   TFADLGLPQEIVRVLNKQGITEPFPIQQAAIPDALAGKDVLGRGPTGSGKTFTFGLPILT 62

Query: 62  I-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                G ++   PR L+L PTRELA Q+ D  ++      L V  ++GG+      + L 
Sbjct: 63  RLTHTGASKPARPRALVLTPTRELATQIHDRLDEPANALGLRVLSVVGGVNINHHIRSLA 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R  D+L+ TPGR  D  N+GKL ++++ I  +DEAD M DMGF+P ++ + +L P   Q 
Sbjct: 123 RPVDLLVATPGRAQDLINQGKLSLDDVAITALDEADHMADMGFLPQVRKLMALTPKKGQR 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++ K+ + F+ +P         +  +T+ H  V    + S+   +++    
Sbjct: 183 LLFSATLDGDVDKLVKQFMHSPVTHSTAPVEAAVDTMTHHLVFVGDRDSRNDVVVR---- 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K  V      L + G +   +HG+  Q +R K +  F +G++ ++V
Sbjct: 239 IAAREGKTILFMRTKHGVDRQAKKLRRVGINALPLHGDKGQGARTKAIEGFADGSVPVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV  V + D P   + Y+HR GRT R G  G   TLV  +     D +
Sbjct: 299 ATDIAARGIDIADVSLVVHVDPPAEHKAYLHRAGRTARGGASGAVVTLVMDQQR---DEV 355

Query: 361 EKLIEKK-VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
            KLI+K  V     DLS    P    ++A+   ARK +  P
Sbjct: 356 AKLIKKAGVKAFELDLSDRPNPAGAPELAKITGARKPSGEP 396


>gi|254283223|ref|ZP_04958191.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium NOR51-B]
 gi|219679426|gb|EED35775.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium NOR51-B]
          Length = 409

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 127/382 (33%), Positives = 199/382 (52%), Gaps = 6/382 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F DL L  +++  V +AG+   +PIQ + +P  LQ HD  G AQTGTGKTA+F++ +   
Sbjct: 29  FHDLDLREEIMHGVAEAGFEYCSPIQAQILPHTLQGHDAIGKAQTGTGKTAAFLITIFND 88

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 +G   +  PR +I+ PTREL  Q+A + E  G++  L    LIGG  ++ Q +K
Sbjct: 89  LLCNPLEGERFLAEPRAVIIAPTRELVMQIAADAEDLGRHTGLNTVALIGGADYQKQLQK 148

Query: 119 L-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +  R  D+++ TPGR++D   R  L ++ +E LV+DEADRMLDMGFIP ++ I    P  
Sbjct: 149 VSRRVTDLIVATPGRLIDFVERRDLYLDRVETLVLDEADRMLDMGFIPQVKRIVRSTPRK 208

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
                   + T     +     Q                 +      Y   S +   +  
Sbjct: 209 EDRQTLLFSAT-FTPDIMNLARQWTFDPVTIEIEPDHVATDSVDQKVYLVASHERMRVLL 267

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   D   + I+F N++  V N+   L K G S   + G ++Q  R K L+ FK+GTI 
Sbjct: 268 NVLRSDEATSVIVFANRRDQVRNVYEKLRKAGISCGILSGEVNQAKRTKTLAQFKDGTIS 327

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A RG+ +  V HV N+++P   E+Y+HRIGRTGRAG  G + +  +++D   +
Sbjct: 328 VLVATDVAGRGIHVDGVSHVVNYNLPEDPEDYVHRIGRTGRAGATGISISFASEDDGFLL 387

Query: 358 DAIEKLIEKKVDWLNGDLSSLN 379
             IE L+ + +  +    S L 
Sbjct: 388 PDIEALLGEPLPCIQPPESLLR 409


>gi|90407101|ref|ZP_01215290.1| ATP-dependent RNA helicase SrmB [Psychromonas sp. CNPT3]
 gi|90311823|gb|EAS39919.1| ATP-dependent RNA helicase SrmB [Psychromonas sp. CNPT3]
          Length = 465

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 116/413 (28%), Positives = 199/413 (48%), Gaps = 14/413 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F  L L   ++ A+   G+ +PT IQ+  IP  +   D+   A TGTGKT +F+LP + 
Sbjct: 6   SFDALELDESLLDAISLMGHTRPTSIQLLAIPPAMDEQDIMASAPTGTGKTLAFLLPAIQ 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++  R +    R LIL PTRELA Q++   ++  +  +L V  +IGG+ ++ Q   + 
Sbjct: 66  RLIDFPRRKGGSARILILTPTRELAMQISGVAQQLTQATSLVVGNIIGGVSYQEQEAIIT 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D++I TPGR++++ +        +E L++DEADRMLDMGFI  +  I     + +QT
Sbjct: 126 DNVDIVIATPGRLMEYIDAEAFDCREVESLILDEADRMLDMGFINEMDRIAGETRWRKQT 185

Query: 181 LLFS--------ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            LFS           + ++            R E    +      +              
Sbjct: 186 SLFSATLEGKGLRDFSRDVLNEPLALNAIISRRESGKINQWIHLADSPEHKLKLLAELLK 245

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                    +   K  I+F   ++ +  L   L +       + G +DQ  R   L+ FK
Sbjct: 246 DENNDADSEEKIAKKIIVFVKTRERLAFLVSQLAELNIHCNYLRGEMDQEKRTLALAQFK 305

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           E  + +++A+D+AARG+D+ D+ HV N+D+P  A+ Y+HRIGRT R G+ G A +L+   
Sbjct: 306 EDKVNILIATDVAARGIDVADITHVINYDLPRSADIYVHRIGRTARGGKKGTAISLIEAH 365

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           DI  +  IE+  ++ +      + +L P  ++   A+ +  +   P+ +K   
Sbjct: 366 DIDMLAKIERYTDQVLKR--RIIKTLRPEHKE---AKLSLRKSKKPVNKKGKA 413


>gi|115456051|ref|NP_001051626.1| Os03g0805200 [Oryza sativa Japonica Group]
 gi|75326432|sp|Q75HJ0|RH37_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 37; AltName:
           Full=OsPL10a
 gi|41469394|gb|AAS07217.1| putative helicase [Oryza sativa Japonica Group]
 gi|108711635|gb|ABF99430.1| ATP-dependent RNA helicase An3, putative, expressed [Oryza sativa
           Japonica Group]
 gi|113550097|dbj|BAF13540.1| Os03g0805200 [Oryza sativa Japonica Group]
 gi|222626000|gb|EEE60132.1| hypothetical protein OsJ_13017 [Oryza sativa Japonica Group]
          Length = 637

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 131/390 (33%), Positives = 205/390 (52%), Gaps = 15/390 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA++ L   +   +    YVKPTP+Q   IP+ +   D+   AQTG+GKTA+F  P+++
Sbjct: 175 TFAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIIS 234

Query: 62  ILEKGRA-------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +   R        R   P  LIL PTREL+ Q+ +   K+     + V +  GG P   
Sbjct: 235 GIMSSRPPQRPRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGGAPIHQ 294

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++LERG ++L+ TPGR++D   R ++ +  ++ L +DEADRMLDMGF P I+ I   +
Sbjct: 295 QLRELERGVEILVATPGRLMDLLERARVSLQMVKYLALDEADRMLDMGFEPQIRKIVEQM 354

Query: 175 PFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                   QT+LFSAT   E+Q+++ +FL +   + V    S+ + I            +
Sbjct: 355 DMPPRGVRQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIAQRVEFVLEADKR 414

Query: 231 KCALLQQLLQSQDTMKN----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              +     Q  +         ++F   K+    L + L   GF   +IHG+  Q+ R  
Sbjct: 415 SYLMDLLHAQKANGTHGKQALTLVFVETKRGADALENWLYTNGFPATSIHGDRTQQEREY 474

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G A 
Sbjct: 475 ALRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLAT 534

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
               + ++     + +L+++    +   L 
Sbjct: 535 AFFNEGNLSLARPLCELMQEANQEVPQWLE 564


>gi|320170169|gb|EFW47068.1| ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 712

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 137/395 (34%), Positives = 197/395 (49%), Gaps = 16/395 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L   ++  +   G   PTPIQI+ IP+ L   D+ GIA TG+GKT  F LP++ 
Sbjct: 268 TFREMKLPKSIIKHLAKRGIKAPTPIQIEGIPVALSGRDMIGIAFTGSGKTLVFSLPIVM 327

Query: 62  IL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGK------NYNLTVALLIGGI 110
                  + G      P  LIL P+RELA Q  DN + Y K         L VAL +GG+
Sbjct: 328 FALEQELKLGFTSGEGPYGLILVPSRELAKQTYDNLQAYAKVLATEGFPLLRVALCMGGV 387

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q   +  G  +++ TPGR++D   +GK+ ++    L +DEADRM+DMGF   ++ I
Sbjct: 388 NMREQLDSMRDGVHLMVATPGRLIDLLQKGKVNLDICRYLTLDEADRMIDMGFEEDMRTI 447

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       V      + 
Sbjct: 448 FSFFKAQRQTLLFSATMPKKIQD----FAKSALVRPVIVNVGRAGAANLDVVQDVEYVNV 503

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L+  L   Q T    IIF  +K +V  +   L  +G    AIHG   Q  R   + +
Sbjct: 504 EARLVYLLQCLQKTAPPVIIFAEKKADVDEIHEYLLLKGVEAVAIHGGKSQEEREWAIRS 563

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK+    ++VA+D+AA+GLD PD+ HV NFD+P   E Y+HRIGRTGR G+ G A T V 
Sbjct: 564 FKDHLKDVLVATDIAAKGLDFPDIQHVINFDMPEEIETYVHRIGRTGRCGKTGTASTFVN 623

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
           K      +  ++ L+ +    +   L  L    E+
Sbjct: 624 KTVPESVLLDVKHLLIEAHQKIPPFLQQLQSEAEQ 658


>gi|169602158|ref|XP_001794501.1| hypothetical protein SNOG_03958 [Phaeosphaeria nodorum SN15]
 gi|160706094|gb|EAT89163.2| hypothetical protein SNOG_03958 [Phaeosphaeria nodorum SN15]
          Length = 623

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 134/394 (34%), Positives = 205/394 (52%), Gaps = 21/394 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  +GY  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L  
Sbjct: 130 FTNPPLDDHLLSNIELSGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQ 189

Query: 63  LE--------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
                            GR R   P +LIL PTREL +Q+ D   K+     +   ++ G
Sbjct: 190 AFQNGPSPPPTAQAGGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYG 249

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G    +Q +++ERG D+L+ TPGR++D   RG++ + +I+ LV+DEADRMLDMGF P I+
Sbjct: 250 GADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIR 309

Query: 169 NITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
            I            QTL+FSAT   ++Q ++ +FL+    + V    ST+E I       
Sbjct: 310 RIVEGEDMPPTAGRQTLMFSATFPRDIQMLARDFLKEYIFLSVGRVGSTSENITQKIEYV 369

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                +        +         +IF   K+   +L   L  QGF   +IHG+  QR R
Sbjct: 370 EDADKRSV---LLDILHTHGAGLSLIFVETKRMADSLSDFLINQGFPATSIHGDRTQRER 426

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            K L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G 
Sbjct: 427 EKALEMFRSGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGI 486

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           A     + +   +  +  L+++    +   L S+
Sbjct: 487 ATAFFNRGNRGVVRDLLDLLKEANQEVPSFLESI 520


>gi|118582049|sp|Q0UWA6|DED1_PHANO RecName: Full=ATP-dependent RNA helicase DED1
          Length = 696

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 134/394 (34%), Positives = 205/394 (52%), Gaps = 21/394 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  +GY  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L  
Sbjct: 203 FTNPPLDDHLLSNIELSGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQ 262

Query: 63  LE--------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
                            GR R   P +LIL PTREL +Q+ D   K+     +   ++ G
Sbjct: 263 AFQNGPSPPPTAQAGGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYG 322

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G    +Q +++ERG D+L+ TPGR++D   RG++ + +I+ LV+DEADRMLDMGF P I+
Sbjct: 323 GADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIR 382

Query: 169 NITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
            I            QTL+FSAT   ++Q ++ +FL+    + V    ST+E I       
Sbjct: 383 RIVEGEDMPPTAGRQTLMFSATFPRDIQMLARDFLKEYIFLSVGRVGSTSENITQKIEYV 442

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                +        +         +IF   K+   +L   L  QGF   +IHG+  QR R
Sbjct: 443 EDADKRSV---LLDILHTHGAGLSLIFVETKRMADSLSDFLINQGFPATSIHGDRTQRER 499

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            K L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G 
Sbjct: 500 EKALEMFRSGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGI 559

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           A     + +   +  +  L+++    +   L S+
Sbjct: 560 ATAFFNRGNRGVVRDLLDLLKEANQEVPSFLESI 593


>gi|91793927|ref|YP_563578.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91715929|gb|ABE55855.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 422

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 143/426 (33%), Positives = 221/426 (51%), Gaps = 13/426 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS ++  AV + GY   TP+Q   IP+ L   DV   A+TGTGKTA+F LP+L
Sbjct: 1   MPFNALGLSSQLQDAVKECGYDATTPVQQAVIPVALLGQDVLASAETGTGKTAAFALPIL 60

Query: 61  TILEKGRARVRMPRTL----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L +   +   P       ++ PTRELA Q+  NF  Y +   L    + GG     Q 
Sbjct: 61  MNLSQIDTQTLTPEQRLRALVMTPTRELAIQIEQNFLSYSRYLELNSLAVYGGASINPQR 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L +G DVL+ TPGR+ D   + +L ++++  LVIDEADRMLD+GF+  I+ +  LV  
Sbjct: 121 KALAQGVDVLVATPGRLFDIIGQHELDLSHVTHLVIDEADRMLDLGFVKDIEKVQRLVAR 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT +DE+Q +++  L  P    + + ++ +          Y    ++ A L 
Sbjct: 181 QRQTMMFSATFSDEVQVLAQKMLNQPAIFHLASSTTAS----TVSQEVYLVDKRRKAELL 236

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L  ++  +  ++F + K+   +L   L   G      HG+  Q +R K L  FK+G +
Sbjct: 237 SELIGRNNWQQVMVFTSTKETAEHLLSELTLDGLKAAVFHGDKSQGARNKALEEFKQGQL 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++A+DLAARGLDI  +  V NF++P   E+Y+HR+GRTGRAG  G A + V+  + + 
Sbjct: 297 RILIATDLAARGLDIQALPLVINFELPPEPEDYVHRVGRTGRAGMAGHAISFVSPNEQQL 356

Query: 357 IDAIEKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARK---NNPIPQKSTGFDRRKK 411
           +  +E  +   ++   L G       P    D+A     +      P P  +    R  K
Sbjct: 357 LIDVEAQVGLTLESKVLPGYEEGAPLPARYRDLADAKPKKAFKHKRPKPSPNKAPTRHGK 416

Query: 412 NYSSQK 417
               +K
Sbjct: 417 YAKVKK 422


>gi|15827355|ref|NP_301618.1| ATP-dependent RNA helicase [Mycobacterium leprae TN]
 gi|221229833|ref|YP_002503249.1| putative ATP-dependent RNA helicase [Mycobacterium leprae Br4923]
 gi|13092904|emb|CAC30321.1| putative ATP-dependent RNA helicase [Mycobacterium leprae]
 gi|219932940|emb|CAR70906.1| putative ATP-dependent RNA helicase [Mycobacterium leprae Br4923]
          Length = 544

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 150/465 (32%), Positives = 233/465 (50%), Gaps = 20/465 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+  ++V A+ + G  +P  IQ  T+PL L   DV G A+TG GKT +F +P+L  
Sbjct: 34  FAKLGVRDEIVRALAERGIQQPFAIQELTLPLALAGDDVIGQARTGMGKTFAFGVPLLQR 93

Query: 63  LEKGRAR----------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
           +                V +P   +     +  A VA        N   +V  + GG  +
Sbjct: 94  ISVTTTARPLSGAPRGLVVVPTRELCLQVADDLATVAKYLTADDDNRRFSVVSIYGGRAY 153

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E Q + L+ GADV++ TPGR+LD   +G L ++ + +LV+DEAD MLD+GF P I+ +  
Sbjct: 154 EPQIEALQTGADVVVSTPGRLLDLCQQGHLQLSGLSVLVLDEADEMLDLGFFPDIERLLG 213

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +P  RQ++LFSATM D +  ++  F+  P  I    P S A           A    K 
Sbjct: 214 QIPTDRQSMLFSATMPDPIITLARTFMDQPIHIRAEAPHSLAVHDTTQQFVYRAHALDKV 273

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L+ ++LQ++      I     K+    + + L ++GF+V A+HG++ Q +R   L  F+
Sbjct: 274 ELISRILQARGRGATMIFT-RTKRTAQKVTNELNERGFAVGAVHGDLGQIARENALEAFR 332

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G + ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G A TLV  +
Sbjct: 333 TGNVDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLVDWD 392

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           ++   + I+K +       +   +  N P    ++A    A      P+K+    RRK +
Sbjct: 393 ELHRWETIDKALGLGTP--DPAETYSNSPHLYTELAIPAEASGTVGTPRKAQ-VKRRKTD 449

Query: 413 YSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
               KS     ++ K ++    +Q +       RG  P    P N
Sbjct: 450 RDGDKSGTSA-QAAKAARTSNSVQRHR-----IRGGQPVTGHPTN 488


>gi|322708287|gb|EFY99864.1| ATP-dependent RNA helicase DBP4 [Metarhizium anisopliae ARSEF 23]
          Length = 796

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 118/455 (25%), Positives = 211/455 (46%), Gaps = 26/455 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F+DL LS   +  +  + +   T +Q + IPL L+ +DV G A+TG+GKT +F++P + 
Sbjct: 51  TFSDLPLSQPTISGIKASHFQTLTEVQQQAIPLALKDNDVLGAAKTGSGKTLAFLIPVLE 110

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +             LI+ PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L 
Sbjct: 111 KLYRAQWTEFDGLGALIISPTRELAVQIFEVLRKIGRYHVFSAGLVIGGKNLKEEAERLA 170

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +           NN++ILV+DEADR++DMGF   +  +   +P +RQT
Sbjct: 171 RMNILVCTPGRMLQHLDQTAGFDANNLQILVLDEADRIMDMGFQSAVDALVEHLPKSRQT 230

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT + ++  ++   L+ P+ + V+  +++A               +K         
Sbjct: 231 LMFSATQSKKVSDLARLSLKEPEYVSVHEAATSATPTNLQQHYITTPLPEKL-DTLYGFL 289

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQL 298
             +     I+F +  K V  +  S       +    +HG   Q +R++I S F       
Sbjct: 290 KSNLKSKIIVFLSSGKQVRFVYESFRHLQPGIPLLHLHGRQRQVARLEITSRFTAAKHSC 349

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+ ARG+D P V  V   D P   + YIHR+GRT R    G+A   +   +   + 
Sbjct: 350 LFATDVVARGIDFPAVDWVIQVDCPEDVDTYIHRVGRTARYQSKGRAVLFLDPSEEPGM- 408

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +++L +KK+            P++K+++ +       N +  ++  F      Y  QK+
Sbjct: 409 -VKRLEQKKI------------PIQKVNVREKKKKSIKNDL--QNMCFQNPDLKYLGQKA 453

Query: 419 HIP------LKESEKISKLQQDIQENDADSLGFRG 447
            I       L+  +++ KL +   +  A  LG  G
Sbjct: 454 FISYSRAIHLQRDKEVFKLDKLDLDAFASGLGLPG 488


>gi|289671300|ref|ZP_06492375.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 458

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 128/381 (33%), Positives = 191/381 (50%), Gaps = 6/381 (1%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F+ L LSP +   +   GY   TPIQ +++P +LQ  DV   A TG+GKTA+F L +
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  L+    R +                        G      V L  G           
Sbjct: 61  LQKLDPALTRAQALVLC-PTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I S     RQ
Sbjct: 120 AHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT  D ++ ++   L++P  I V    +  E  +  F        K  A L    
Sbjct: 180 SLLFSATFPDIIRTLAREILKDPVEITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLL-- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ ++FCN +K V  +  SL++ GFS  A+HG+++QR R ++L  F   +  ++
Sbjct: 238 --RFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+HG A +LVA  +   + A
Sbjct: 296 VASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARVQA 355

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           +E    + + W    L++  P
Sbjct: 356 LEAAQGQPLKWSRAPLATARP 376


>gi|238791786|ref|ZP_04635423.1| ATP-independent RNA helicase dbpA [Yersinia intermedia ATCC 29909]
 gi|238728890|gb|EEQ20407.1| ATP-independent RNA helicase dbpA [Yersinia intermedia ATCC 29909]
          Length = 460

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 125/374 (33%), Positives = 205/374 (54%), Gaps = 8/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L 
Sbjct: 5   SFSSLALPTEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLD 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            +  G     + + L+L PTRELA QV+    +  +       L + G  P   Q   L 
Sbjct: 65  KIAVGE---FVTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLV 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRI +H  +  L++++++ILV+DEADRMLDMGF   I ++ +  P  RQT
Sbjct: 122 HAPHIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++         +R  +N      + +       +    +K   L   + 
Sbjct: 182 LLFSATYPVGIER----ISARVQRQPINVEVDDGDEVPAIEQVFFETTREKRLPLLISVL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+  ++  +LE +G SV A+HG+++QR R ++L  F   + +++V
Sbjct: 238 SHYQPSSCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+  V NF++    E ++HRIGRTGRAG  G A +L   +++    AI
Sbjct: 298 ATDVAARGLDIKDLALVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMSRAHAI 357

Query: 361 EKLIEKKVDWLNGD 374
           E  ++ K+ W   +
Sbjct: 358 EDYLQIKLKWTPAE 371


>gi|256053074|ref|XP_002570034.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|227287389|emb|CAY17652.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 527

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 103/387 (26%), Positives = 176/387 (45%), Gaps = 3/387 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL +S  +  AV + G+   T IQ K IP +L+  D+   A+TG+GKT +F++P++ 
Sbjct: 51  KFEDLPISEPIKRAVKEMGFTHMTDIQGKCIPQLLEHRDLMACAKTGSGKTLAFLIPVVE 110

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L  G         +I+ PTREL+ Q      +  +  NL + L++GG   + + + LE
Sbjct: 111 LMLNLGLQPRNGTGAIIISPTRELSLQTYGVLGELIQFTNLRIGLIMGGSNRQTEAQNLE 170

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +L+ TPGR+LDH +  K  + +    ++ +    L              +  T + 
Sbjct: 171 KGVTILVATPGRLLDHLSNTKFFLRHNLKALVIDEADRLLDIGFEVEMRQIIKLLPTVRQ 230

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +  +   +E  K   N       + V +   T  T+E            +   L     
Sbjct: 231 TMLFSATLNEKTKNLANAALKASCVMVGSAPDTEATVEGLEQGYVVCPPDRRFCLLYTFL 290

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  K  ++F      V      L      V AIHG   Q  R      F +    +++
Sbjct: 291 KKNKSKKIMVFMASCMEVKFYYELLNFVDTPVLAIHGRQKQAKRTSTFLQFVKAESAVLL 350

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+ ARGLDIP V  +  +D P+ A+ YIHR+GRT RAG  G A  ++   +++ +  +
Sbjct: 351 CTDVGARGLDIPKVDWILQYDPPDDAKEYIHRVGRTARAGSTGNALLVLRPHELEFLSIL 410

Query: 361 EKLIEKKVDW--LNGDLSSLNPPLEKI 385
            K   K V++   N  ++ + P LEK+
Sbjct: 411 RKARVKVVEYEIANSKMADVQPALEKL 437


>gi|125559398|gb|EAZ04934.1| hypothetical protein OsI_27114 [Oryza sativa Indica Group]
          Length = 540

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 106/398 (26%), Positives = 185/398 (46%), Gaps = 15/398 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           +F +L    G    +V  +   G+ +PTPIQ + IP++L   +    A TG+GKT +F+ 
Sbjct: 143 NFEELVSRYGCDSYLVGNLSKLGFQEPTPIQRQAIPILLSGRECFACAPTGSGKTLAFLF 202

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           P+L  ++ G       + +IL PTRELAAQ     +K  K       + +          
Sbjct: 203 PILMKIKPGSKEG--VKAVILCPTRELAAQTTRECKKLAKGR--KFYIKLMTKDLSKSGN 258

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             +   D+L+ TP R+     +  L ++ +E LV+DE+D++ ++GF+  I ++       
Sbjct: 259 FKDMHCDILVSTPLRLDHAVQKRDLDLSRVEYLVLDESDKLFELGFVEVIDSVVKACSNP 318

Query: 178 RQTLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
                 FSAT+ D ++ ++   + +  R+ V   +S +  I+      +A   K   L  
Sbjct: 319 SIIRSLFSATLPDSIETLARTIMHDAVRVIVGRKNSASSLIKQKL--IFAGTEKGKLLAL 376

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +   ++      +IF   K+    L   L         IH ++D+  R   + N + G  
Sbjct: 377 RQSFAESLNPPVLIFVQSKERAKELYKELAFDDVRADVIHADLDEEQRQDAVDNLRAGQT 436

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+++ ARG+D   V  V N+D P  A  YIHRIGR+GRAGR G+A T   +ED   
Sbjct: 437 WVLIATEVIARGMDFKGVNCVINYDFPESASAYIHRIGRSGRAGRSGEAITFFTEEDKPF 496

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           +  I  ++      +   + +L     K+   +H   R
Sbjct: 497 LRNIANVLISSGCEVPSWIKALP----KLKRKKHRVNR 530


>gi|92113747|ref|YP_573675.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
           DSM 3043]
 gi|91796837|gb|ABE58976.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
           DSM 3043]
          Length = 424

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 128/371 (34%), Positives = 193/371 (52%), Gaps = 5/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L   ++ A+   G+   TPIQ + +   L   DV G AQTGTGKTA+F++ +L  
Sbjct: 46  FHDFDLPVPLMRAIHALGFEYCTPIQAEALAKTLLGGDVVGKAQTGTGKTAAFLISILAY 105

Query: 63  L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                     +   PR LI+ PTRELA Q+  + +   +  +L VA ++GG+ ++ Q  +
Sbjct: 106 FLEEKAPDGQKPGAPRALIVAPTRELALQIEKDAKALARFTSLNVASVVGGMDYQKQRDQ 165

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R  DVL+ TPGR+LD   +  + +   E+LV+DEADRML MGFIP ++ I    P   
Sbjct: 166 LGRKVDVLVATPGRLLDFHEKRDVDLTQTEVLVLDEADRMLSMGFIPDVKRIVRHTPKAE 225

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           +   F  + T   Q +     Q            + E   +     Y         L   
Sbjct: 226 ERQTFLFSAT-FSQDILNLANQWTHDAAHVEIEVSLENAANIDQRVYLVSDSDKQRLLVN 284

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +Q+ M+  I+F N++  V NL   L K G +V  + G++ Q +R+  L  F+ G + +
Sbjct: 285 LLNQENMERVIVFGNRRDLVRNLDSELRKAGINVAMLSGDVPQNTRITTLDKFRNGEVDV 344

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A RG+ I DV HV N+ +P   E+Y+HRIGRTGRAG  G + + V +ED   + 
Sbjct: 345 LVATDVAGRGIHIDDVSHVVNYTLPEDPEDYVHRIGRTGRAGAEGVSISFVGEEDAFALP 404

Query: 359 AIEKLIEKKVD 369
            IE  I  K+ 
Sbjct: 405 GIESYIGDKLP 415


>gi|160874449|ref|YP_001553765.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|160859971|gb|ABX48505.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315266685|gb|ADT93538.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 411

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 169/418 (40%), Positives = 235/418 (56%), Gaps = 14/418 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L+ K+V  +   GY  PTPIQ++ IP +L + DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFSVLSLNSKLVNTLASLGYESPTPIQLEAIPAILAKRDVMAGAQTGTGKTAAFALPIL 60

Query: 61  TI-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                    +    VR  R L+L PTRELA QV  +F KY K  ++ V +  GG+  +AQ
Sbjct: 61  HHLLALSPLQELTAVRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDAQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
                 G DVLI TPGR+LDH  +G L +  + +LV DEADRMLDMGF+  IQ +   VP
Sbjct: 121 VAVFNAGIDVLIATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT+   +  +S+  L++PK IEV   ++TA  IE    A  A    +    
Sbjct: 181 SDRQTLLFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDADRKTELVSH 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                        +IF   K+ V  L   L K      A HG++ Q +R K+L  FK+G 
Sbjct: 241 L---VRSKNWHQVLIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQGK 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           IQ++VA+D+AARGLDI ++ +V NF++P  AE+YIHRIGRTGRAG  G A TL ++ED  
Sbjct: 298 IQVLVATDVAARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDAL 357

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            ++ +E +++K++   WL G      P   K+D     + +       K      +K+
Sbjct: 358 LLEEVEVVLDKRLPQQWLPG----FEPDFNKMDTEPRRNGKAAQKQRAKKRALGGKKR 411


>gi|322796780|gb|EFZ19207.1| hypothetical protein SINV_02979 [Solenopsis invicta]
          Length = 605

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 117/392 (29%), Positives = 200/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADL--GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           +F+ L   +    + A+ D G+   T IQ K+IP +L+  D+ G A+TG+GKT +F++P 
Sbjct: 92  NFSVLSEKVCENTLKAIKDMGFTNMTEIQAKSIPPLLEGRDLVGAAKTGSGKTLAFLIPA 151

Query: 60  LTILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K +   R     +I+ PTREL+ Q     ++  K +  T  LL+GG   + + +K
Sbjct: 152 VELIYKLKFMPRNGTGVIIMSPTRELSMQTFGVLKELMKYHYHTYGLLMGGASRQTEAQK 211

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G ++++ TPGR +    N    L  N++ LVIDEADR+LD+G+   ++ I +++P  
Sbjct: 212 LAKGVNIIVATPGRLLDHLQNTPDFLYKNLQCLVIDEADRILDIGYEEELKQIINILPKR 271

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T ++  ++   L+               T+E       A  S+K  LL  
Sbjct: 272 RQTMLFSATQTQKVAMITTLALKKEPIYVGVDDDKEMATVEGLQQGYVACPSEKRFLLLF 331

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V +IHG   Q  R      F   +  
Sbjct: 332 TFLKKNRKKKIMVFFSSCMSVKFHHELLNYIDLPVMSIHGKQKQTKRTTTFYQFCNASTG 391

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
            ++ +D+AARGLDIPDV  +  +D P+  + YIHR+GRT R  G  G A  ++  E++  
Sbjct: 392 TLLCTDVAARGLDIPDVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGF 451

Query: 357 IDAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
           +  +++     V+        ++ +   LEK+
Sbjct: 452 LRYLKQA-RVPVNEYEFSWNKIADIQLQLEKL 482


>gi|296087640|emb|CBI34896.3| unnamed protein product [Vitis vinifera]
          Length = 1180

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 130/368 (35%), Positives = 204/368 (55%), Gaps = 2/368 (0%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR 71
           ++  V  AG+  PTPIQ ++ P+ LQ  D+  IA+TG+GKT  +++P    L++ R   +
Sbjct: 33  LLFQVYSAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRNNPQ 92

Query: 72  M-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130
           M P  L+L PTRELA Q+ D   K+G++  L+   L GG P   Q + L+RGAD+++ TP
Sbjct: 93  MGPTVLVLSPTRELATQIQDEAVKFGRSSRLSCTCLYGGAPKGPQLRDLDRGADIVVATP 152

Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190
           GR+ D     ++ +  +  LV+DEADRMLDMGF P I+ I   VP  RQTL+++AT   E
Sbjct: 153 GRLNDILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKE 212

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGII 250
           ++K++ + L NP ++ +                    Y  +     + +       + II
Sbjct: 213 VRKIAADLLVNPVQVNIGNVDELVANKAITQYVEVLPY-MEKHKRLEQILRSQEPGSKII 271

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
                K + +       + F   AIHG+  Q  R  +L+ F+ G   ++VA+D+AARGLD
Sbjct: 272 IFCSTKKMCDQLARNLTRPFGAAAIHGDKSQGERDYVLNQFRTGRSPVLVATDVAARGLD 331

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           I D+  V N+D P   E+Y+HRIGRTGRAG  G A+T  A++D K+   + K++E     
Sbjct: 332 IKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFAEQDAKYASDLVKVLEGANQR 391

Query: 371 LNGDLSSL 378
           +  ++  +
Sbjct: 392 VPPEIRDM 399


>gi|167584515|ref|ZP_02376903.1| ATP-dependent RNA helicase DbpA [Burkholderia ubonensis Bu]
          Length = 464

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 147/405 (36%), Positives = 215/405 (53%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 9   FSTLPLTPATLANLAQLGYADMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + ++L PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 69  LDA---RRFDVQAMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 126 GAHIVVGTPGRIMDHLDRGTLALDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ F     R       +            Y     +      LL +
Sbjct: 186 LFSATYPDGIAKLSQQF----LRNPKEVKLAERHDDSKIRQRFYEVTEDERLHAVGLLLN 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 242 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  +  IE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGCIE 361

Query: 362 KLIEKKVDW-----LNGDLSS-LNPPLEKIDIAQHNHARKNNPIP 400
           + ++++V+W     L  D S  L PP+E + I      RK+   P
Sbjct: 362 QALKREVEWHPLAELKADASEPLLPPMETLQIL---GGRKDKIRP 403


>gi|159489124|ref|XP_001702547.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280569|gb|EDP06326.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 600

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 194/389 (49%), Gaps = 13/389 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L   ++  +    + KPTP+Q  +I + L   D+   AQTG+GKTA+F  P++ 
Sbjct: 145 SFEDLQLPACMMENIKRCKFTKPTPVQKHSITIGLAGRDLMACAQTGSGKTAAFCFPIIA 204

Query: 62  ILEKGRA--------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
            +             R  +P  L+L PTREL +Q+ D   K+     L   ++ GG P  
Sbjct: 205 SMLMKGYQPAAGRNSRKALPGALVLAPTRELTSQIYDEARKFTYMTGLRPVVIYGGAPAP 264

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + LERG D+L+ TPGR+ D   RG++ +++I  L +DEADRMLDMGF P I+ I   
Sbjct: 265 NQLRDLERGCDILVATPGRLSDFIERGRVGLSSIVFLCLDEADRMLDMGFEPQIRRIVEQ 324

Query: 174 VPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                       +FSAT   E+Q+++ +FL N   + V    S+ + I         +  
Sbjct: 325 EDMPPVGHRQTLMFSATFPKEIQRLASDFLANYVFLTVGRVGSSTDLIVQHIEYVTPEEK 384

Query: 230 KKCALLQQLLQSQDTMKN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           +   L           +   ++F   K+    L   L +      +IHG+  Q  R   L
Sbjct: 385 QNTLLDLISTVEVSRRQGLTLVFVETKRGADELERILTRNQLPATSIHGDRSQEQREMAL 444

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +FK G   +MVA+D+AARGLDIP V HV N+D+P   ++Y+HRIGRTGRAG  G A   
Sbjct: 445 RSFKSGKTPVMVATDVAARGLDIPHVTHVINYDLPKDIDDYVHRIGRTGRAGHKGLATAF 504

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
               D     ++ +++ +    + G L +
Sbjct: 505 FTDSDAPLARSLVEVLTETNQTVPGWLQN 533


>gi|145257496|ref|XP_001401758.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Aspergillus
           niger CBS 513.88]
 gi|143359821|sp|A2QIL2|PRP28_ASPNC RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|134058672|emb|CAK38656.1| unnamed protein product [Aspergillus niger]
          Length = 810

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 123/425 (28%), Positives = 201/425 (47%), Gaps = 38/425 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  L  +++  +   GY +PTPIQ   IP+ +Q  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 373 SWDESNLPKRLMELINRVGYKEPTPIQRAAIPIAMQNRDLIGVAVTGSGKTAAFLLPLLC 432

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                    E    +   P  ++L PTRELA Q+    +K+       V  ++GG   E 
Sbjct: 433 YIAELPRIDEFEWRKADGPYAIVLAPTRELAQQIEIEAKKFTGPLGFNVVSIVGGHSLEE 492

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 493 QAYSLRDGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 552

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE------------------- 215
           P + +                 N  Q+  R  +   ++                      
Sbjct: 553 PVSNEKPDSEDAENPLAMSRHINHDQHRYRQTMMYTATMPTAVERIARKYLRRPAIVTIG 612

Query: 216 ------TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269
                       V   A   K+   L  +L S +     I+F N K+N   +   +++ G
Sbjct: 613 SAGEAVDTVEQRVEMIAGEDKRKKRLGDILSSGEFRAPIIVFVNIKRNCDAIAREIKQWG 672

Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329
           FS   +HG+  Q  R   L++ + GT  ++VA+DLA RG+D+PDV  V NF++    E+Y
Sbjct: 673 FSSVTLHGSKTQDQREAALASVRNGTTDVLVATDLAGRGIDVPDVSLVVNFNMATSIESY 732

Query: 330 IHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
            HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ
Sbjct: 733 THRIGRTGRAGKSGVAITFLGNEDADVMYDLKQML------MKSPISRVPEELRKHEAAQ 786

Query: 390 HNHAR 394
               R
Sbjct: 787 SKPTR 791


>gi|118362432|ref|XP_001014443.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89296210|gb|EAR94198.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 420

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 121/378 (32%), Positives = 198/378 (52%), Gaps = 10/378 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF D GL  +++  +++ G+ KP+P+Q +TIPL +    +   A+ GTGKTASFV+P+L 
Sbjct: 46  DFEDYGLKIELLRGIVEKGWDKPSPVQEETIPLTIAGSSIIARAKNGTGKTASFVIPILE 105

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA---QNKK 118
            L+         ++LIL PTRELA QV+   ++ GK  N+ V +  GG  F+    + + 
Sbjct: 106 QLDTT---KNFIQSLILVPTRELALQVSSVAKELGKYLNVNVMVSTGGTSFKEDVLRLQN 162

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            E    +++ TPGRILD   +    ++  +I+ +DEAD++L   F+  I+ I   +   R
Sbjct: 163 KESPVHIIVATPGRILDLAKKNIANLSQCQIIALDEADKLLSQDFVLIIEEILEFLKKDR 222

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT  + +++    F +               T++           K        
Sbjct: 223 QIMLFSATFPNSVKQ----FKEKHMADCKTVNMMDELTLKGVTQYYAYLEEKLKVQCLNH 278

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L ++  +   IIFCN  K V  L + + +QG+S   IH  ++Q  R K+  NF +G  + 
Sbjct: 279 LAAKLQINQAIIFCNSTKRVELLANKIIEQGYSCFYIHAKMEQHHRNKVFHNFTQGQGRF 338

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V+SDL  RG+D+  V  V NFD P  +E Y+HRIGR+GR G  G A   +  ED  ++ 
Sbjct: 339 LVSSDLFTRGIDVQTVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINFITDEDKDNLI 398

Query: 359 AIEKLIEKKVDWLNGDLS 376
            IE  ++ ++  +  ++ 
Sbjct: 399 KIEHELDIQMLPIPKEID 416


>gi|326473339|gb|EGD97348.1| ATP-dependent RNA helicase DRS1 [Trichophyton tonsurans CBS 112818]
          Length = 700

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 133/359 (37%), Positives = 193/359 (53%), Gaps = 1/359 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L 
Sbjct: 297 SFQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIVPILE 356

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++
Sbjct: 357 RLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKK 416

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 417 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKSRQT 476

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+ + K+    L  P R+ V++   T  T+   FV        K       L 
Sbjct: 477 MLFSATMTNSVDKLIRVGLNKPVRLMVDSKKQTVGTLVQEFVRLRPGREDKRLGYLMFLC 536

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F  QKK    +       G     +HG++ Q  R+K + +F++  +  ++
Sbjct: 537 KTVYSNRVIVFFRQKKEAHRVRIVFGLMGLKAAELHGSMSQEQRIKSVEDFRDAKVSYLL 596

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K +  
Sbjct: 597 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKE 655


>gi|159045255|ref|YP_001534049.1| putative ATP-dependent RNA helicase [Dinoroseobacter shibae DFL 12]
 gi|157913015|gb|ABV94448.1| putative ATP-dependent RNA helicase [Dinoroseobacter shibae DFL 12]
          Length = 434

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 145/362 (40%), Positives = 215/362 (59%), Gaps = 5/362 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LGLSP++V  +       PTPIQ + IP  L   DV GIAQTGTGKTA+F LP+L  L K
Sbjct: 2   LGLSPRLVAGLAAQNITDPTPIQTRAIPHGLNGRDVLGIAQTGTGKTAAFGLPLLDALMK 61

Query: 66  GRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
              +         IL PTREL +Q+ ++   + +  +L + +++GG+    Q K+ ERGA
Sbjct: 62  AGTKPAPRTCRGLILAPTRELVSQICESLRAFTEGSHLKLQVIVGGVAIGPQIKRAERGA 121

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
           D+++ TPGR++D  +R  L ++    LV+DEAD+MLD+GFI  ++ I  L+P  RQT+LF
Sbjct: 122 DLIVATPGRLIDLLDRKALRLSETRFLVLDEADQMLDLGFIHALRKIAPLLPAERQTMLF 181

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM  +++++S  +L +P R+EV  P   A+ I             +  +         
Sbjct: 182 SATMPKQMEELSRAYLTDPARVEVAPPGKIADKITQSVHFVEQGAKTQLLIDLL---GNH 238

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +  ++F   K     L   L   GF   AIHGN  Q  R + L  F+EGT++++VA+D
Sbjct: 239 RDELALVFSRTKHGADRLARKLSNAGFETAAIHGNRSQGQRERALKAFREGTLKVLVATD 298

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARG+DIPDV  V+NFD+PN  EN++HRIGRT RAGR G+A    A E++  + A++K+
Sbjct: 299 VAARGIDIPDVRFVYNFDLPNVPENFVHRIGRTARAGRDGQAVAFCAPEEMGELRAVQKV 358

Query: 364 IE 365
           + 
Sbjct: 359 MG 360


>gi|239606948|gb|EEQ83935.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis ER-3]
 gi|327350595|gb|EGE79452.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 482

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 137/427 (32%), Positives = 224/427 (52%), Gaps = 12/427 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 57  SFKDLGIIDSLCEACETLGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQ 116

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    LIL PTRELA Q++  FE  G   ++  A+++GG+    Q   L +
Sbjct: 117 AL---MEKPQSLFGLILAPTRELAYQISGAFEALGSLISVRCAVIVGGMDMVPQAIALGK 173

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +    N     + N++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 174 KPHIVVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRT 233

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L NP R+ +++      +             K        L 
Sbjct: 234 YLFSATMSSKVESLQRASLSNPLRVSISSSKYQTVSTLLQSYLFIPHKYKDL--YLVYLL 291

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ I+F         L   L   GF    +HG + Q SR+  LS F+  +  ++V
Sbjct: 292 NEYAGQSAIVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSSRLGALSKFRSRSRDILV 351

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V NFD+P  ++ YIHR+GRT RAG+ G AF +V + D++    I
Sbjct: 352 ATDVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFNIVTQYDLEVWLRI 411

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  + KK++    +   +    +++  AQ +   +   +       ++R    ++ +   
Sbjct: 412 ENALGKKLEEYKVEKEEVMVLSDRVGEAQRHAITEMKDL------HEKRGSRGATLRGRR 465

Query: 421 PLKESEK 427
           P K +++
Sbjct: 466 PAKGAKR 472


>gi|255565933|ref|XP_002523955.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223536802|gb|EEF38442.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 564

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 123/372 (33%), Positives = 201/372 (54%), Gaps = 9/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L+  ++  +   GY +PTPIQ++ + + L   D+   A+TG+GKTA+F +PM+ 
Sbjct: 122 SFEDMCLNQNIMKDIAYHGYTRPTPIQVQAMTVSLSGRDLLACAETGSGKTAAFTIPMIQ 181

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
               +    R   P  L+L PTRELA Q+    + + ++ +    A+++GG     Q  +
Sbjct: 182 HCLAQSPIRRGDGPLALVLAPTRELAQQIEKEVKCFSRSLDSFRTAIVVGGTNIADQRSE 241

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G D+++ TPGR +DH  +G   ++ I  +V+DEADRMLDMGF P I+ +   +P   
Sbjct: 242 LRAGVDIMVATPGRFIDHLQQGNTSLSRISFIVLDEADRMLDMGFEPQIREVLHNLPERH 301

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC------ 232
           QTLLFSATM +E++ +++ +L  P +++V   S     +              C      
Sbjct: 302 QTLLFSATMPEEIETLAQEYLTTPVQVKVGKVSGLTANVSQVLKKVSESEKIDCLLGLLV 361

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
               Q  ++       ++F ++K     +  +L  QG    A+HG   Q  R   L +F+
Sbjct: 362 EDASQAERADHPFPLTVVFVDRKARCDEVAEALVAQGLRAVALHGGRSQNEREAALHDFR 421

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G+  ++VA+D+A+RGLD+  V HV N D+P   E+Y+HR+GRTGRAG  G+A +     
Sbjct: 422 SGSTDILVATDVASRGLDVTGVTHVINLDLPKTMEDYVHRVGRTGRAGSAGQATSFYTDR 481

Query: 353 DIKHIDAIEKLI 364
           D+  +  I+K I
Sbjct: 482 DLFLVAQIKKAI 493


>gi|170105186|ref|XP_001883806.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164641441|gb|EDR05702.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 662

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 135/397 (34%), Positives = 206/397 (51%), Gaps = 19/397 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F    L P ++  +  A Y  PTP+Q  +IP+V    D+   AQTG+GKT  F+ P+L
Sbjct: 176 LSFTSPPLDPVLLENIGFAMYTTPTPVQKYSIPIVAGGRDLMACAQTGSGKTGGFLFPIL 235

Query: 61  TILE---------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105
           +                   GRAR   P  LIL PTREL +Q+ D   K+     +  A+
Sbjct: 236 SASFAEGPRPPPAQSSAGGYGRARKAYPTALILAPTRELVSQIHDEARKFAYRSWVRPAV 295

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG     Q + +ERG D+L  TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P
Sbjct: 296 VYGGADINQQLRLIERGCDLLSATPGRLVDLIERGRISLANIKYLVLDEADRMLDMGFEP 355

Query: 166 YIQNITSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
            I+ I           RQTL+FSAT   ++Q ++++FL++   + V    ST+E I    
Sbjct: 356 QIRRIVQGEDMPSTADRQTLMFSATFPRDIQMLAKDFLKDYVFLSVGRVGSTSENITQKI 415

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
                   +   L     Q ++ +   ++F   K+    L   L        +IHG+  Q
Sbjct: 416 EYVEDLDKRSVLLDILASQPKEDLGLTLVFVETKRMADMLSDFLMGNNLPATSIHGDRTQ 475

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R R   L  F+ G   +MVA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG 
Sbjct: 476 REREMALQTFRTGRTPIMVATAVAARGLDIPNVTHVVNYDLPSDIDDYVHRIGRTGRAGN 535

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            G +     + +   +  + +L+ +    +   L ++
Sbjct: 536 TGVSTAFFNRGNKNIVRDLVELLREANQEIPSWLETV 572


>gi|330447635|ref|ZP_08311283.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491826|dbj|GAA05780.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 461

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 131/368 (35%), Positives = 213/368 (57%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P ++  +   GY   TPIQ +++PL+L+  DV    +TG+GKTA+F L +L  
Sbjct: 6   FSTLNLNPDLLSNLTSLGYDAMTPIQAQSLPLILEGKDVIAQGKTGSGKTAAFGLGLLQN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L   R RV+   TL+L PTRELA QVA    +  +  +    L +  G+PF  Q   LE 
Sbjct: 66  LRVKRFRVQ---TLVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ +H  +G L ++ +  LV+DEADRML+MGF   +  I    P  RQTL
Sbjct: 123 GAHIIVGTPGRVEEHIRKGFLCLDELNTLVLDEADRMLEMGFQDSLDAIIEGAPRDRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D++  +++  ++NP +++V +     +             +++     +LL S
Sbjct: 183 LFSATYPDQIASIAKRIMRNPVQVKVES---NHDNSSISQHFYKVDNNEERMRAVRLLLS 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ ++FCN K+    +   LE  GFS  A+HG+++QR R + L  F   +  ++VA
Sbjct: 240 QHRPESCVVFCNTKREAQEISDDLEAYGFSAIALHGDLEQRERDRTLVLFANKSRSILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++  V N+ +    E ++HRIGRTGRAG  G A +L + ++   +  +E
Sbjct: 300 TDVAARGLDIDNLDAVINYHLARDTEVHVHRIGRTGRAGSKGIACSLFSDKEHYKVALLE 359

Query: 362 KLIEKKVD 369
             +++ ++
Sbjct: 360 DYLDRPIE 367


>gi|115473749|ref|NP_001060473.1| Os07g0647900 [Oryza sativa Japonica Group]
 gi|143456709|sp|Q5K5B6|RH57_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 57
 gi|22093706|dbj|BAC07000.1| putative ATP-dependent RNA helicase [Oryza sativa Japonica Group]
 gi|23495827|dbj|BAC20037.1| putative ATP-dependent RNA helicase [Oryza sativa Japonica Group]
 gi|113612009|dbj|BAF22387.1| Os07g0647900 [Oryza sativa Japonica Group]
 gi|125601315|gb|EAZ40891.1| hypothetical protein OsJ_25369 [Oryza sativa Japonica Group]
          Length = 540

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 107/398 (26%), Positives = 185/398 (46%), Gaps = 15/398 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           +F +L    G    +V  +   G+ +PTPIQ + IP++L   +    A TG+GKT +F+ 
Sbjct: 143 NFEELVSRYGCDSYLVGNLSKLGFQEPTPIQRQAIPILLSGRECFACAPTGSGKTLAFLF 202

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           P+L  ++ G       + +IL PTRELAAQ     +K  K       + +          
Sbjct: 203 PILMKIKPGSKEG--VKAVILCPTRELAAQTTRECKKLAKGR--KFYIKLMTKDLSKSGN 258

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             +   D+LI TP R+     +  L ++ +E LV+DE+D++ ++GF+  I ++       
Sbjct: 259 FKDMHCDILISTPLRLDHAVQKRDLDLSRVEYLVLDESDKLFELGFVEVIDSVVKACSNP 318

Query: 178 RQTLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
                 FSAT+ D ++ ++   + +  R+ V   +S +  I+      +A   K   L  
Sbjct: 319 SIIRSLFSATLPDSIETLARTIMHDAVRVIVGRKNSASSLIKQKL--IFAGTEKGKLLAL 376

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +   ++      +IF   K+    L   L         IH ++D+  R   + N + G  
Sbjct: 377 RQSFAESLNPPVLIFVQSKERAKELYKELAFDDVRADVIHADLDEEQRQDAVDNLRAGKT 436

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+++ ARG+D   V  V N+D P  A  YIHRIGR+GRAGR G+A T   +ED   
Sbjct: 437 WVLIATEVIARGMDFKGVNCVINYDFPESASAYIHRIGRSGRAGRSGEAITFFTEEDKPF 496

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           +  I  ++      +   + +L     K+   +H   R
Sbjct: 497 LRNIANVLISSGCEVPSWIKALP----KLKRKKHRVNR 530


>gi|310657448|ref|YP_003935169.1| ATP-dependent RNA helicase, dead/deah box family [Clostridium
           sticklandii DSM 519]
 gi|308824226|emb|CBH20264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           sticklandii]
          Length = 411

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 135/426 (31%), Positives = 226/426 (53%), Gaps = 18/426 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF +LG++ ++   +L      PT +Q+K+IP +L+  DV   AQTGTGKT +F+LP+L 
Sbjct: 4   DFIELGITNELSERLLKLRIDTPTQVQVKSIPYILEGRDVIAQAQTGTGKTLAFLLPILE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++      +    LI+ PTRELA Q+++  +K      + +    GG   E Q  KL++
Sbjct: 64  KIDVDSEDTQA---LIISPTRELAIQISEEAQKLISVKGINILSAYGGQDVEKQLNKLKK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILD   R  L ++ +++LV+DEAD+ML MGF+  +  I S  P  +Q +
Sbjct: 121 NIPLVVGTPGRILDLIRRESLNLSKLKMLVLDEADQMLHMGFLDEVDAIFSYTPSEKQVM 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT   E++K+++ ++  P  + V   + T + I            +K       +  
Sbjct: 181 CFSATFNKEVKKLAKTYMNEPHYVSVKGQNVTLDEI---DQIIVHTTDRKKQEALCEMID 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+FC  K+ V  L   L ++G++   +HG++ Q  R K++ +F+   IQL++A
Sbjct: 238 TQQPFMAIVFCRTKRRVTALYEDLSQKGYNCDQLHGDLSQAKREKVMKDFRNAKIQLLIA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+  + H++N+D+    + YIHRIGRTGRAG  G A T V     KH  ++E
Sbjct: 298 TDVAARGIDVDGITHIYNYDMVLDTDTYIHRIGRTGRAGEKGTAVTFVTP---KHNASLE 354

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           K        L GD+ +    +E     +H  ++      +K + FD   K  S + S   
Sbjct: 355 K--------LEGDIKADVKKIEMHKAVKHEDSKAKPQAKKKPS-FDDFLKKNSKKNSRNK 405

Query: 422 LKESEK 427
            +  ++
Sbjct: 406 GRAPKR 411


>gi|255089334|ref|XP_002506589.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
 gi|226521861|gb|ACO67847.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
          Length = 576

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 129/381 (33%), Positives = 195/381 (51%), Gaps = 8/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D     +++ AV  AGY  PTPIQ ++ P+ LQ +D+  +A+TG+GKT  ++ P +  
Sbjct: 127 FTDWEWPRELMDAVDRAGYKSPTPIQAQSWPIALQGYDLISVAKTGSGKTVGYLFPGIMH 186

Query: 63  LE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +         R   P   +L PTRELA Q+ D   K+G+   +    L GG P   Q ++
Sbjct: 187 IRGRQGPSFPRPVGPTVTVLAPTRELATQIQDETAKFGRAIGMYSVCLYGGAPKGHQLRE 246

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G  + I TPGR+ D    G + + +   +V+DEADRMLDMGF P I+ I    P  R
Sbjct: 247 LRHGPQIAIATPGRLNDFLESGAVNLGSSTYVVLDEADRMLDMGFEPQIRKILQRAPAQR 306

Query: 179 QTLLFSATMTDELQKVSENF-LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTL F+AT    + +V+        +    +T +  A       V     + K+  L++ 
Sbjct: 307 QTLFFTATWPRAVVRVATAILTNPIQVNIGDTDTLVANKDITQVVEVCGGFQKQQRLMEV 366

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L          I+FC  KK    +  S+   G     IHG+ +QR R  IL+ F+ G + 
Sbjct: 367 LRNPPTQPLKAIVFCGTKKMCDQIGRSMGGMG---AVIHGDKEQRERDWILNQFRSGRVP 423

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI +V  V NFD PN+ E+Y+HRIGRTGRAG  G A + +   +    
Sbjct: 424 VLVATDVAARGLDIKEVNMVVNFDFPNQIEDYVHRIGRTGRAGNKGWAHSFIEPGEGNMA 483

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             +  ++      +  +L  +
Sbjct: 484 RKLIPILRDAGQDVPAELDDM 504


>gi|156543608|ref|XP_001604318.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 594

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 112/395 (28%), Positives = 170/395 (43%), Gaps = 42/395 (10%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G  KPTPIQ++ IP VL   D+ GIA TG+GKT  FVLP++ 
Sbjct: 180 SFKEMKFHKGILLGLEQKGITKPTPIQVQGIPAVLSGRDIIGIAFTGSGKTLVFVLPLIM 239

Query: 62  ILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI------ 110
              +        R   P  LI+ P+RELA Q  D  + Y  +        I         
Sbjct: 240 FCLEQEVALPFGRNEGPYGLIICPSRELAKQTYDIIQHYTNSLRHHHCPEIRCCLAIGGV 299

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
           P       + RG  +++ TPGR++D  ++  + +     L +DEADRM+DMGF   ++ I
Sbjct: 300 PVSESLDVISRGVHIMVATPGRLMDMLDKKMVKLGVCRYLCMDEADRMIDMGFEEDVRTI 359

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A       +       +
Sbjct: 360 FSFFEGQRQTLLFSATMPKKIQN----FARSALVKPVTINVGRAGAASMNVIQEVEYVKQ 415

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   + T    +IF  +K++V  +   L  +G    AIHG             
Sbjct: 416 EAKIVYLLECLKKTPPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGK----------- 464

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
                                    HV N+D+P+  ENY+HRIGRTGR+G  G A T + 
Sbjct: 465 ---------------XXXXXXXXXQHVINYDMPDDVENYVHRIGRTGRSGHTGTATTFIN 509

Query: 351 K-EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
           K  D   +  ++ L+ +    +   L  L    EK
Sbjct: 510 KANDESVLLDLKHLLREAKQKIPPFLLELCSENEK 544


>gi|77360375|ref|YP_339950.1| ATP-dependent RNA helicase, DEAD box [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76875286|emb|CAI86507.1| ATP-dependent RNA helicase, DEAD box family [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 440

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 130/440 (29%), Positives = 212/440 (48%), Gaps = 3/440 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLG+  ++   +   G  +PT IQ   +P  L  HD+   ++TG+GKT +F+LP +
Sbjct: 1   MHFTDLGIDNRLETQLAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAV 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + K +A   R PR LI+ PTRELA QV           N+    ++GG  F  Q K L
Sbjct: 61  QRVMKQKALSKRDPRVLIVAPTRELATQVFTQLRLLIAGTNIKAVKILGGENFNDQIKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                 ++ TPGR+ DH  +  L ++ +E+L+ DEADR+LD+GF   ++ I  L     +
Sbjct: 121 RNDPQFVVATPGRLADHLTKRTLQLSGLELLIFDEADRILDLGFTEQLKMINDLADHRLR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  Q  + +     K  ++   ++  +  +       A +      L +  
Sbjct: 181 QTLLFSATLDHAQVDALSRNLLKKPKQIMLSAANEQHSDIKQSLYLADHLDHKEALLEHF 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +QD +   IIF   + +   L  +L  +GF    + G++ Q  R+ I+  F     +++
Sbjct: 241 LNQDDVGQCIIFTATRADTSRLSEALCAKGFKAQPLAGDLAQNKRLDIMDAFSRENFKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+A+RGLD+  V HV NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D     A
Sbjct: 301 ITTDVASRGLDLLSVTHVINFDLPKHAEEYVHRIGRTGRAGFKGSALSLVGPKDWPSYLA 360

Query: 360 IEKLI--EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           I+  +  E K D ++G  +      EK  +A     +             + KK  +  K
Sbjct: 361 IKAFLNDELKFDSVDGLKAKFKGIKEKKPVAVLATEKTVAAKKPVFKRKAKPKKPSAPIK 420

Query: 418 SHIPLKESEKISKLQQDIQE 437
           + I +     + + ++  QE
Sbjct: 421 APINIDGDTPMRRRKKPEQE 440


>gi|238783457|ref|ZP_04627480.1| ATP-independent RNA helicase dbpA [Yersinia bercovieri ATCC 43970]
 gi|238715702|gb|EEQ07691.1| ATP-independent RNA helicase dbpA [Yersinia bercovieri ATCC 43970]
          Length = 511

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 127/374 (33%), Positives = 204/374 (54%), Gaps = 8/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L 
Sbjct: 56  SFSSLTLPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLD 115

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            +  G     + + L+L PTRELA QV+    +  +       L + G  P   Q   L 
Sbjct: 116 KIAVGE---FVTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLV 172

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRI +H  +  L++++++ILV+DEADRMLDMGF   I ++ +  P  RQT
Sbjct: 173 HAPHIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQT 232

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++         +R  VN      +         +    +K   L   + 
Sbjct: 233 LLFSATYPAGIEQ----ISARVQRQPVNVEVDDGDEAPAIEQLFFETTREKRLPLLISVL 288

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+  ++  +LE +G SV A+HG+++QR R ++L  F   + +++V
Sbjct: 289 SHYQPASAVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLV 348

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+  V NF++    E ++HRIGRTGRAG  G A +L   +++    AI
Sbjct: 349 ATDVAARGLDIKDLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHAI 408

Query: 361 EKLIEKKVDWLNGD 374
           E  ++ K+ W   D
Sbjct: 409 EDYLQIKLKWTPAD 422


>gi|58263404|ref|XP_569112.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108568|ref|XP_777235.1| hypothetical protein CNBB4650 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687159|sp|Q5KMN6|HAS1_CRYNE RecName: Full=ATP-dependent RNA helicase HAS1
 gi|50259920|gb|EAL22588.1| hypothetical protein CNBB4650 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223762|gb|AAW41805.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 607

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 113/404 (27%), Positives = 194/404 (48%), Gaps = 12/404 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LSP    A+   G+   T +Q +TIP +L   DV G A+TG+GKT +F++P + +
Sbjct: 131 FSTLNLSPPTTAAIERMGFETMTEVQARTIPPLLAGKDVLGAARTGSGKTMAFLIPSVEL 190

Query: 63  LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   R +       +I+ PTRELA Q+    ++  + ++ T  +L+GG   +A+  KL +
Sbjct: 191 LSTLRFKPVNGTGVIIISPTRELALQIFGVAKELMQGHSQTFGVLMGGANRKAEADKLVK 250

Query: 122 GAD-VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS-LVPFTRQ 179
           G + ++      +    N    +  N++ LVIDEADR+L++GF   ++ I   L    RQ
Sbjct: 251 GVNLIVATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEEEMKQIIKLLPSENRQ 310

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           ++LFSAT T ++  ++   L+          +  A T +          S +  +L    
Sbjct: 311 SMLFSATQTTKVTDLARISLRPGPLYINVDETKEASTADMLEQGYVVCESDQRFMLLFTF 370

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  I+F +   +V      L      V  +HG   Q+ R      F      ++
Sbjct: 371 LKKNLKKKVIVFFSSCNSVKYHAELLNYIDVPVLDLHGKQKQQKRTNTFFEFINAPAGIL 430

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+AARGLDIP V  +  FD P+   +YIHR+GRT RAG+ GK+   +   ++  +  
Sbjct: 431 LCTDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVGRTARAGKSGKSLLFLLPSELGFLRF 490

Query: 360 IE---------KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           ++         +  +KKV  +   L SL      ++ +  +  R
Sbjct: 491 LKVAKVPLNEYQFPQKKVADVQKQLESLISKNHYLNTSARDGYR 534


>gi|46117016|ref|XP_384526.1| hypothetical protein FG04350.1 [Gibberella zeae PH-1]
 gi|91206844|sp|Q4IEK8|HAS1_GIBZE RecName: Full=ATP-dependent RNA helicase HAS1
          Length = 590

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 119/408 (29%), Positives = 199/408 (48%), Gaps = 8/408 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS K + A+ +  + K T IQ + IP  L   DV G A+TG+GKT +F++P++ 
Sbjct: 116 SFEELKLSEKTMKAINEMKFTKMTEIQRRGIPPSLAGRDVLGAAKTGSGKTLAFLIPVIE 175

Query: 62  ILEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + R    +I+  PTRELA Q+     +   +++ T  ++IGG    A+ +KL 
Sbjct: 176 MLSSLRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAEKLA 235

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G ++LI TPGR+LDH      +  N++ LVIDEADR+L++GF   ++ I  ++P   + 
Sbjct: 236 KGVNLLIATPGRLLDHLQNTPFVFKNLKSLVIDEADRILEIGFEDEMRQIIKVLPKEDRQ 295

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSAT T +++ ++   L+               T+E          +    LL    
Sbjct: 296 TMLFSATQTTKVEDLARISLRPGPLYINVDEEKQYSTVEGLEQGYIICETDMRFLLLFSF 355

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  I+F +    V      L      V  +HG   Q+ R      F       +
Sbjct: 356 LKRNLKKKIIVFFSSCACVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGTL 415

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHID 358
           + +D+AARGLDIP V  +  FD P+   +YIHR+GRT R     G++   +   ++  + 
Sbjct: 416 ICTDVAARGLDIPSVDWIIQFDPPDDPRDYIHRVGRTARGSNNKGRSLMFLQPNELGFLS 475

Query: 359 AIEKLIEKKVDWLN---GDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
            + K     V   N     + ++   LEK+ I+Q+ +  K+     +S
Sbjct: 476 HL-KAARVPVAEFNFPTKKIINVQSQLEKL-ISQNYYLNKSAKDGYRS 521


>gi|326482407|gb|EGE06417.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Trichophyton
           equinum CBS 127.97]
          Length = 1182

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 129/438 (29%), Positives = 210/438 (47%), Gaps = 18/438 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL  + +  +   GY  PT IQ + +P ++   DV G+A+TG+GKT +F+LPM  
Sbjct: 549 KWSQCGLGVQTLDVIRKLGYEGPTSIQSQAVPAIMSGRDVIGVAKTGSGKTIAFLLPMFR 608

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R    +  P +LI+ PTRELA Q+      + K  NL      GG P + Q  +L
Sbjct: 609 HIRDQRPLENMEGPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAEL 668

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   +  
Sbjct: 669 KRGAEIIVCTPGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRP 728

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT    ++ ++   L  P  I V   S  A  I                L  
Sbjct: 729 NRQTVLFSATFPRNMEALARKTLSKPIEIIVGGRSVVAPEITQIVEVRNDDAKFVRLLEL 788

Query: 237 ---QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                   ++     ++F ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 789 LGNLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKA 848

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 849 GIFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 908

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            ++   I K +++    +   +  + N  L+K+         K        +GF  +   
Sbjct: 909 ERYSVDISKALKQSGQPVPEPIQKMVNAFLDKV---------KEGKEKASGSGFGGKGLE 959

Query: 413 YSSQKSHIPLKESEKISK 430
              Q+         K  K
Sbjct: 960 RLDQERDATRNRERKTYK 977


>gi|326476402|gb|EGE00412.1| Pre-mRNA-processing ATP-dependent RNA helicase prp5 [Trichophyton
           tonsurans CBS 112818]
          Length = 1182

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 129/438 (29%), Positives = 210/438 (47%), Gaps = 18/438 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL  + +  +   GY  PT IQ + +P ++   DV G+A+TG+GKT +F+LPM  
Sbjct: 549 KWSQCGLGVQTLDVIRKLGYEGPTSIQSQAVPAIMSGRDVIGVAKTGSGKTIAFLLPMFR 608

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R    +  P +LI+ PTRELA Q+      + K  NL      GG P + Q  +L
Sbjct: 609 HIRDQRPLENMEGPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAEL 668

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   +  
Sbjct: 669 KRGAEIIVCTPGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRP 728

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT    ++ ++   L  P  I V   S  A  I                L  
Sbjct: 729 NRQTVLFSATFPRNMEALARKTLSKPIEIIVGGRSVVAPEITQIVEVRNDDAKFVRLLEL 788

Query: 237 ---QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                   ++     ++F ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 789 LGNLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKA 848

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 849 GIFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 908

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            ++   I K +++    +   +  + N  L+K+         K        +GF  +   
Sbjct: 909 ERYSVDISKALKQSGQPVPEPIQKMVNAFLDKV---------KEGKEKASGSGFGGKGLE 959

Query: 413 YSSQKSHIPLKESEKISK 430
              Q+         K  K
Sbjct: 960 RLDQERDATRNRERKTYK 977


>gi|302502646|ref|XP_003013284.1| hypothetical protein ARB_00469 [Arthroderma benhamiae CBS 112371]
 gi|291176847|gb|EFE32644.1| hypothetical protein ARB_00469 [Arthroderma benhamiae CBS 112371]
          Length = 1181

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 129/438 (29%), Positives = 210/438 (47%), Gaps = 18/438 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL  + +  +   GY  PT IQ + +P ++   DV G+A+TG+GKT +F+LPM  
Sbjct: 526 KWSQCGLGVQTLDVIRKLGYEGPTSIQSQAVPAIMSGRDVIGVAKTGSGKTIAFLLPMFR 585

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R    +  P +LI+ PTRELA Q+      + K  NL      GG P + Q  +L
Sbjct: 586 HIRDQRPLENMEGPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAEL 645

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   +  
Sbjct: 646 KRGAEIIVCTPGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRP 705

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT    ++ ++   L  P  I V   S  A  I                L  
Sbjct: 706 NRQTVLFSATFPRNMEALARKTLSKPIEIIVGGRSVVAPEITQIVEVRNDDAKFVRLLEL 765

Query: 237 ---QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                   ++     ++F ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 766 LGNLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKA 825

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 826 GIFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 885

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            ++   I K +++    +   +  + N  L+K+         K        +GF  +   
Sbjct: 886 ERYSVDISKALKQSGQPVPEPIQKMVNAFLDKV---------KEGKEKASGSGFGGKGLE 936

Query: 413 YSSQKSHIPLKESEKISK 430
              Q+         K  K
Sbjct: 937 RLDQERDATRNRERKTYK 954


>gi|229821387|ref|YP_002882913.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333]
 gi|229567300|gb|ACQ81151.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM
           12333]
          Length = 580

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 145/415 (34%), Positives = 224/415 (53%), Gaps = 19/415 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD G+S  +V A+ D G V P PIQ  T+P+ LQ HD+ G A+TGTGKT  F +P+L 
Sbjct: 48  TFADFGVSDAIVTALRDVGIVHPFPIQSLTLPVALQAHDIIGQAKTGTGKTLGFGIPLLE 107

Query: 62  ILEKGRARVRM-------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L++ PTRELA QVA + E   ++    V  L GG  +E 
Sbjct: 108 RVVGPGEDGWDAVEAPGAPQALVVVPTRELAVQVAGDLETAARHRKARVVQLYGGRAYEP 167

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L RG +V++ TPGR++D   +  L ++++  +V+DEAD MLD+GF+P ++ + +  
Sbjct: 168 QVAALGRGTEVVVGTPGRMIDLMRQRVLDLSHVRTVVLDEADEMLDLGFLPDVETLLAAT 227

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  R T+LFSATM   +  ++  F+ +P  I  + P+    T++      Y  ++     
Sbjct: 228 PPQRHTMLFSATMPGAVVALARRFMSHPTHIRAHDPNDDGATLKAIRKVVYRAHALDKVE 287

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   L   D     I+F   K+    +   L  +GF+  AIHG++ Q +R + L  F+ G
Sbjct: 288 MLARLLQADGRGLTIVFTRTKRTAAKVADELVDRGFAAAAIHGDLGQGAREQALRAFRHG 347

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+DI DV HV N+  P   + ++HRIGRTGRAG  G A T V  +DI
Sbjct: 348 KVDVLVATDVAARGIDIDDVTHVVNYQCPEDEKTFLHRIGRTGRAGNTGTAVTFVDWDDI 407

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
                I++ +E         L + NPP E    + H ++  +  IP+ + G   R
Sbjct: 408 PRWALIDRALE---------LGTPNPP-ETYSTSPHFYS--DLGIPEGTKGRLPR 450


>gi|195108365|ref|XP_001998763.1| GI24146 [Drosophila mojavensis]
 gi|193915357|gb|EDW14224.1| GI24146 [Drosophila mojavensis]
          Length = 829

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 122/431 (28%), Positives = 216/431 (50%), Gaps = 3/431 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  +++  +   GY  PTPIQ KTIPL+L+  DV  +A+TG+GKTA F++P+   
Sbjct: 40  FQSLGLGFELLKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++        R LIL PTRELA Q     +  G+   L   L++GG   ++Q   +   
Sbjct: 100 LQRREPTKGA-RALILSPTRELAVQTYKFIKDLGRFMELKTILVLGGDSMDSQFSAIHTC 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR L       L +N+IE +V DEADR+ +MGF   +      +P +RQT++
Sbjct: 159 PDIIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQTVM 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L +P  I ++  S   +T+            +  AL+  L    
Sbjct: 219 FSATLPKLLVEFARAGLSDPVLIRLDVESKLPDTL-SLKFLYCRPDDRYTALVVLLKYVI 277

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   + +V  +   L + G S  +++ ++D  +R    + F    + +++ +
Sbjct: 278 PQEAQTVVFAGTQHHVELISFILTQAGISNTSVYSSLDPAARKINTAKFASKKVSVLIVT 337

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP + +V N   P   + ++HR+GR  RAGR G A+++ + +D  H+  +  
Sbjct: 338 DVAARGIDIPSLDYVVNLHFPGVPKLFVHRVGRCARAGRTGTAYSIFSTDDTAHLLDLHL 397

Query: 363 LIEKKVDWL-NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
            + +  +   N  + ++   L + +    N  +K++ I       +   K Y S +    
Sbjct: 398 FLNRPFNINDNSSIGTIPQDLLEEEYLTVNEIKKSHHIAGVLRTSENAYKKYLSSRPTAS 457

Query: 422 LKESEKISKLQ 432
              + +  K++
Sbjct: 458 TDANARAKKIK 468


>gi|123441353|ref|YP_001005340.1| ATP-dependent RNA helicase SrmB [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088314|emb|CAL11105.1| ATP-dependent RNA helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 441

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 143/443 (32%), Positives = 232/443 (52%), Gaps = 16/443 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++L L  ++V A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP + 
Sbjct: 5   NFSELDLDERLVDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K+  L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I++   + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT   + +++ +E  L  P  +E +      + I+  +        K        L
Sbjct: 185 LLFSATLEGEAIREFAERILTEPVELEADPSRRERKKIQQWYYRADNIEHKTAL--LVHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  ++  IIF   ++ V  L   L + G +   + G + Q  R + +    +G + ++
Sbjct: 243 LKQPEVQKSIIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDVASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHDHLLLGR 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK-KNYSSQKS 418
           I + +++ +      +  L P            + K+   P K     R++ K    +K+
Sbjct: 363 IGRYLKEPLK--PRVIDELRP-------TSKAPSEKSTGKPSKKVLAKRKELKEAGKEKT 413

Query: 419 HIPL--KESEKISKLQQDIQEND 439
            + +  ++++ + K ++   + D
Sbjct: 414 KVKVRHRDAKNVGKRRKPKDKPD 436


>gi|269796056|ref|YP_003315511.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269098241|gb|ACZ22677.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542]
          Length = 593

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 143/454 (31%), Positives = 235/454 (51%), Gaps = 25/454 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D G+ P++V A+ DAG V P PIQ  T+P+ +  HD+ G A+TGTGKT  F +P+L
Sbjct: 14  VTFGDFGVRPEIVQALADAGIVAPFPIQAMTLPVAMAGHDIIGQAKTGTGKTLGFGVPLL 73

Query: 61  TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             +                P+ L++ PTRELA QVA + E      ++ +  L GG  +E
Sbjct: 74  HRVVAPGEPGYDELPAPGKPQALVIVPTRELAVQVAKDLEAASTKRSVRIVQLYGGRAYE 133

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q K LE+G +V++ TPGR++D   +G L +   + +V+DEAD MLD+GF+P ++ + + 
Sbjct: 134 PQVKALEQGVEVVVGTPGRMIDLLKQGFLDLTRAQCVVLDEADEMLDLGFLPDVEKLLAR 193

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
            P  R T+LFSATM   +  ++  +++ P  I  N P    +T+++     Y  ++    
Sbjct: 194 TPAVRHTMLFSATMPGAVVAMARRYMKQPTHIRANDPDDGGQTVKNIKQVVYRAHALDKV 253

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            +   +   +     I+F   K+    +   L  +GF+  AIHG++ Q +R + L  F+ 
Sbjct: 254 EVLARILQSEGRGLSIVFARTKRTAAKVADELADRGFASGAIHGDLGQGAREQALRAFRS 313

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I ++VA+D+AARG+D+ +V HV N+  P   + Y+HR GRTGRAG  G A T V  +D
Sbjct: 314 GKIDVLVATDVAARGIDVDEVTHVVNYQCPEDEKTYLHRTGRTGRAGHKGTAVTFVDWDD 373

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           +     I K ++  +            P+E    + H +   +  IP+ + G   R    
Sbjct: 374 LPRWSLINKALDLDIPE----------PVETYSTSPHLYT--DLDIPEGTKGRLPR---- 417

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
            S ++   L ++E +  L +  +   A      G
Sbjct: 418 -SAQTRAGL-DAEVLEDLGETGKRGAARPAQSGG 449


>gi|229893773|gb|ACQ90244.1| DEAD-box RNA helicase [Glycine max]
          Length = 537

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 129/413 (31%), Positives = 200/413 (48%), Gaps = 12/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD GL   V+      G+ KP+PIQ +  P +L   D+ GIA TG+GKT +F +P + 
Sbjct: 120 SFADSGLPENVLECCK--GFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAVM 177

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +   ++ R P  L+L PTRELA Q++D     G++  +    L GG     Q  
Sbjct: 178 HVLGKRKGKSSKGRNPLGLVLSPTRELAQQISDVMCDAGRSCGVQSICLYGGTSKGPQIS 237

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G D++I TPGRI D    G   +  +  +V+DEADRMLDMGF   +++I       
Sbjct: 238 SLKSGIDIVIGTPGRIQDLIEMGICCLKEVSFVVLDEADRMLDMGFEQIVRSILGQTCSD 297

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALL 235
           RQ ++FSAT    +  +++ F+       V  +   +    +         +   K  + 
Sbjct: 298 RQMVMFSATWPLPVHYLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDKRLVA 357

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 +      ++F   K     + + L++ G+ V +IHG+  Q  R K LS FK  +
Sbjct: 358 LLEKYHKSQRNRVLVFVLYKLEAKRVENMLQEGGWKVVSIHGDKAQHDRTKALSLFKNAS 417

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             LM+A+D+AARGLDIPDV  V N+  P   E+Y+HRIGRTGRAG+ G A T   +++  
Sbjct: 418 CPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFMQQNKG 477

Query: 356 HIDAIEKLIEKKVDWLNGDL----SSLNPPLEKIDIAQHNHARKNNPIPQKST 404
               +  ++ +    +   L    + +     K+  A       + P  QK T
Sbjct: 478 LAGELVNVLREAGQTVPDALLKFGTHVKKKESKLYGAHFKEIPVDAPKSQKKT 530


>gi|156389591|ref|XP_001635074.1| predicted protein [Nematostella vectensis]
 gi|156222164|gb|EDO43011.1| predicted protein [Nematostella vectensis]
          Length = 436

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 149/434 (34%), Positives = 223/434 (51%), Gaps = 25/434 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL+  +V   +  G  KPT IQ+  +P +LQ  D  G A+TG+GKTA+F LP+L 
Sbjct: 8   SFAGLGLNKWLVSQCVAMGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQ 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L            ++L PTRELA Q+AD F+  G+   L  A+++GG+    Q   L  
Sbjct: 68  KLCD---DPYGIFAVVLTPTRELAFQIADQFKVLGRPIGLKEAVIVGGLDMMKQALSLAN 124

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V+I TPGR+ DH      L    I+ LV+DEADR+LD  F   ++ I   VP  RQT
Sbjct: 125 KPHVVIATPGRLADHIKSTDTLNLKKIQFLVLDEADRLLDPSFGDDLKVIFDAVPEKRQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+TD + ++ +     P   EV +  +T   ++  ++ T A        L  LL+
Sbjct: 185 LLFSATLTDTMGELQKMSGSQPFSYEVQSDIATVAELDQRYLLTPAHVR--DCYLVHLLR 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             D  ++ I+F +  KN   L     K G +   +H  + Q  R+  L+ FK GTI+++V
Sbjct: 243 ENDDNQSVIVFTHTCKNCQVLVSMFHKLGLTCVGLHSLLSQGERLAALARFKSGTIKILV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDIP V  V N ++P   ++YIHR+GRT RAGR G A ++V + DI  +  I
Sbjct: 303 ATDVASRGLDIPQVELVVNSNIPADPKDYIHRVGRTARAGRGGMAISMVTQYDIDRVKKI 362

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP-------------------IPQ 401
           E+ I  K+         +   L+ + +A+     +                         
Sbjct: 363 EEKINTKLTEYTTSEKEVLTLLKAVLVARREAELRVRDSDILEKRKVNKRKKNILEGKEP 422

Query: 402 KSTGFDRRKKNYSS 415
           +S+G  +R+K  SS
Sbjct: 423 ESSGHKKRRKKVSS 436


>gi|120564782|gb|ABM30180.1| VASA2n [Paragonimus westermani]
          Length = 606

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 139/393 (35%), Positives = 212/393 (53%), Gaps = 18/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L+  +   V  A Y +PTP+Q   IP++    D+   AQTG+GKTA+F++P+L 
Sbjct: 132 SFADLDLNRIIRNNVELAQYERPTPVQKHAIPIIASNRDLMACAQTGSGKTAAFLIPILN 191

Query: 62  IL------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            +             +   R + P  LIL PTRELA+Q+ ++  K+     +   +L GG
Sbjct: 192 RMIEEGPGDSLIATMETNRRKQFPVALILAPTRELASQIFEDARKFAYRSRIRPCVLYGG 251

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
               AQ  ++ +G ++L+ TPGR+ D   RG++ +++   L++DEADRMLDMGF P I+ 
Sbjct: 252 ADMRAQLIEVSKGCNLLVATPGRLTDVIERGRIGLDHCRFLILDEADRMLDMGFEPQIRR 311

Query: 170 ITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I            QTL+FSAT   E+Q ++++FL     + V    ST+E        ++
Sbjct: 312 IVEQDNLPPSGKRQTLMFSATFPHEIQMLAKDFLSRYIFLAVGRVGSTSEN--ITQSISW 369

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            +  KK   L  LL S D     ++F   K+   +L   L  Q F V +IHG+  Q  R 
Sbjct: 370 VEEDKKRDALVDLLSSSDPGVLTLVFVETKRGADSLEDYLFSQKFQVASIHGDRTQDDRE 429

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             LS F+ G   ++VA+ +AARGLDIP+V HV N+D+P+  E Y+HRIGRTGR G  G A
Sbjct: 430 LALSCFRNGRTPILVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRVGNLGIA 489

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            +    ++      + +L+E+    +   L +L
Sbjct: 490 TSFFNDKNRNLARGLVELLEEVNQNVPSWLRAL 522


>gi|116051486|ref|YP_789681.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586707|gb|ABJ12722.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 446

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 140/420 (33%), Positives = 219/420 (52%), Gaps = 4/420 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ A+    + +PTP+Q   IP  L+ HD+   AQTG+GKTA+F+LP+L  
Sbjct: 7   FSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFLLPLLHR 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L        + R LIL PTRELA Q     E++ +   +   L+ GG  F+ Q  +L + 
Sbjct: 67  LLAEDKPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRKN 126

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +++I TPGR+L+  N G L + +IE+LV+DEADRMLDMGF   +  + +  P  RQTLL
Sbjct: 127 PEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAERQTLL 186

Query: 183 FSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT +   L KV    L+ P+ + +N      E +    +       K    L Q L S
Sbjct: 187 FSATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVITADDVAHK--EQLLQWLLS 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +T    I+F N + +   L   L      V  +HG  DQ+ R   +   K+G ++++VA
Sbjct: 245 NETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKILVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + ++E
Sbjct: 305 TDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDWNLMSSVE 364

Query: 362 KLIEKKVDWLN-GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           + +++  +  N  +L +     +K+  +      K     +K T      K   + +   
Sbjct: 365 RYLKQNFERRNIKELKAAYQGPKKLKASGKAAGSKKKKQDRKGTAAKPAAKRKPAARPKA 424


>gi|302811173|ref|XP_002987276.1| hypothetical protein SELMODRAFT_158648 [Selaginella moellendorffii]
 gi|302815051|ref|XP_002989208.1| hypothetical protein SELMODRAFT_235717 [Selaginella moellendorffii]
 gi|300143108|gb|EFJ09802.1| hypothetical protein SELMODRAFT_235717 [Selaginella moellendorffii]
 gi|300144911|gb|EFJ11591.1| hypothetical protein SELMODRAFT_158648 [Selaginella moellendorffii]
          Length = 362

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 108/362 (29%), Positives = 187/362 (51%), Gaps = 7/362 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
            + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P +  ++  +  +++  
Sbjct: 2   GIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPAIEKIDPNKNAIQV-- 59

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            LIL PTRELA Q +   ++  K+  +   +  GG   +    +L +   +L+ TPGR+L
Sbjct: 60  -LILVPTRELALQTSQVCKELAKHLKIETMVTTGGTSLKDDIMRLYQPVHLLVGTPGRVL 118

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D  N+G   + +  ++V+DEAD++L     P ++ + S +P +RQ LLFSAT    +++ 
Sbjct: 119 DLANKGVCKLKDCSMMVMDEADKLLSPEIQPLVERLLSFLPESRQVLLFSATFPVTVKQ- 177

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
              F +   R           T++           ++       L S+  +   IIFCN 
Sbjct: 178 ---FKEKFLRKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNS 234

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
              V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+SDL  RG+DI  V
Sbjct: 235 VNRVELLAKKITELGYSCFYIHAKMLQSHRNRVFHDFRNGACRNLVSSDLFTRGIDIQAV 294

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
             V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE+ +  ++  +   
Sbjct: 295 NVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKPIPPQ 354

Query: 375 LS 376
           + 
Sbjct: 355 ID 356


>gi|50425797|ref|XP_461495.1| DEHA2F26598p [Debaryomyces hansenii CBS767]
 gi|49657164|emb|CAG89921.1| DEHA2F26598p [Debaryomyces hansenii]
          Length = 474

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 126/399 (31%), Positives = 196/399 (49%), Gaps = 11/399 (2%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
            + +AG+ KP+P+Q ++IP+ L   D+   A+ GTGKTASFV+P    L++ R +V   +
Sbjct: 2   GIFEAGFEKPSPVQEESIPMALAGRDILARAKNGTGKTASFVIP---CLQQARPKVNKIQ 58

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            LIL PTRELA Q +      GK+  L   +  GG        +L     VL+ TPGR+L
Sbjct: 59  ALILVPTRELALQTSQVVRTLGKHLGLQCMVTTGGTSLRDDILRLNDPVHVLVGTPGRVL 118

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D  +R    ++   + V+DEAD+ML   F   I+ I +  P TRQ+LLFSAT    ++  
Sbjct: 119 DLASRKVADLSECPLFVMDEADKMLSREFKGIIEQILAFFPTTRQSLLFSATFPLAVKS- 177

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
              F+                T+            K+       L S+  +   IIFCN 
Sbjct: 178 ---FMDQHLTKPYEINLMDELTLRGISQFYAFVEEKQKLHCLNTLFSKLQINQAIIFCNS 234

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
              V  L   + + G+S    H  + Q +R K+   F++G ++++V SDL  RG+DI  V
Sbjct: 235 TNRVELLAKKITELGYSCYYSHAKMPQHARNKVFHEFRQGKVRVLVCSDLLTRGIDIQAV 294

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
             V NFD P  AE Y+HRIGR+GR G  G A  L++  D  ++  IE+ +  ++  +   
Sbjct: 295 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYNLYKIEQELGTEIKPIPAT 354

Query: 375 L-SSLNPPLEKIDIAQH---NHARKNNPIPQKSTGFDRR 409
           +  SL     +  + +    +   K N    K +G++ +
Sbjct: 355 IDKSLYVAENEAAVPRPFKIDQLPKGNETVHKKSGYEYK 393


>gi|154299943|ref|XP_001550389.1| hypothetical protein BC1G_10862 [Botryotinia fuckeliana B05.10]
 gi|160380638|sp|A6SEH9|DED1_BOTFB RecName: Full=ATP-dependent RNA helicase ded1
 gi|150857142|gb|EDN32334.1| hypothetical protein BC1G_10862 [Botryotinia fuckeliana B05.10]
          Length = 683

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 132/396 (33%), Positives = 207/396 (52%), Gaps = 21/396 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L
Sbjct: 186 LKFTNPPLDDHLIKNIELAHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPIL 245

Query: 61  TILE--------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
           +                  GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 246 SQAFQTGPSPVPANAAGSFGRTRKAYPTSLILAPTRELVSQIYDESRKFAYRSWVRPCVV 305

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 306 YGGADIGSQLRQMERGCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQ 365

Query: 167 IQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 366 IRRIVEGEDMPGVQNRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVE 425

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +        +         +IF   K+   +L   L  Q F   +IHG+  QR
Sbjct: 426 YVEDIDKRSV---LLDILHTHGAGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQR 482

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 483 ERERALEMFRNGRCPILVATAVAARGLDIPNVKHVVNYDLPTDIDDYVHRIGRTGRAGNT 542

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G +     + +      + +L+++    +   L ++
Sbjct: 543 GISTAFFNRGNRGVCRDLIELLKEANQEIPSFLENI 578


>gi|270262252|ref|ZP_06190524.1| hypothetical protein SOD_b04600 [Serratia odorifera 4Rx13]
 gi|270044128|gb|EFA17220.1| hypothetical protein SOD_b04600 [Serratia odorifera 4Rx13]
          Length = 460

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 121/373 (32%), Positives = 202/373 (54%), Gaps = 8/373 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ L L  + +  + + GY + TP+Q   +P +L+  DV   A+TG+GKTA+F + +L
Sbjct: 4   VSFSSLPLPAEQLANLNELGYAEMTPVQAAALPAILKGQDVRAKAKTGSGKTAAFGIGLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             +   +   +    LIL PTRELA QV+    +  +       L + G  P   Q   L
Sbjct: 64  DKINVSQVAAQA---LILCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGPQLDSL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +++ TPGRI +H  +  L+++ +++LV+DEADRMLDMGF   I ++ S  P  RQ
Sbjct: 121 VHAPHIVVGTPGRIQEHLRKKTLVLDELKVLVLDEADRMLDMGFADDIDDVISYTPPQRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    +++         +R  +N      +         Y     +   +    
Sbjct: 181 TLLFSATYPSGIER----ISARVQRDPLNVEVDDGDDQTSIEQRFYETTRDQRPAVLVSA 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + ++FCN K++  ++  +LE +G SV A+HG+++QR R ++L  F   + +++
Sbjct: 237 IRHYQPSSCVVFCNTKRDCQSVYEALEARGISVSALHGDLEQRDRDQVLVRFANRSCRVL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++  V N+++    E ++HRIGRTGRAG +G A +L   ++++   A
Sbjct: 297 VATDVAARGLDIKELELVVNYELAFDPEVHVHRIGRTGRAGLNGLAISLCTPQEMERAHA 356

Query: 360 IEKLIEKKVDWLN 372
           IE+   K V+W  
Sbjct: 357 IEEYQRKAVNWAP 369


>gi|254284073|ref|ZP_04959041.1| RNA helicase DbpA [gamma proteobacterium NOR51-B]
 gi|219680276|gb|EED36625.1| RNA helicase DbpA [gamma proteobacterium NOR51-B]
          Length = 474

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 138/365 (37%), Positives = 201/365 (55%), Gaps = 7/365 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  + A+   GY   TP+Q +++PL+L   DV   A+TG+GKTA+F L +L  
Sbjct: 19  FSSLPLAPNQLDALDALGYKAMTPVQAQSLPLILSGRDVIVRAKTGSGKTAAFALGLLAT 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLER 121
           +     R    +  ++ PTRELA QV     +         + LL GG+P   Q   L  
Sbjct: 79  I---NPRFFGVQAFVMCPTRELADQVGKEIRRLASRMPNIKLVLLCGGVPLGPQRDSLSH 135

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI DH  RG L + +++ LV+DEADRMLDMGF   I+ I S +P  RQTL
Sbjct: 136 GAHIVVGTPGRIEDHLKRGSLNIESVKTLVLDEADRMLDMGFADAIKQIISGMPGDRQTL 195

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   ++Q++S +  +NP  + V+  +     IE  F        +           
Sbjct: 196 LFSATYPQDIQRISRSIQRNPASVTVDDVAHNEAVIEQLFYEVNKHERQATLCAL---FE 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                N ++FCN KK    +   L  QG    AIHG+++QR R ++L      +  ++VA
Sbjct: 253 HYRPANAVVFCNTKKQCDEVAVFLRGQGIEARAIHGDLEQRERDQVLLQLTNDSCPVLVA 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V N+++P   E Y+HRIGRTGRAG  GKA ++V   +   I AIE
Sbjct: 313 TDVAARGLDIKDLEMVVNYELPRDPEVYVHRIGRTGRAGAVGKACSIVVPAESPRIRAIE 372

Query: 362 KLIEK 366
              ++
Sbjct: 373 DYKQQ 377


>gi|110834947|ref|YP_693806.1| ATP-dependent RNA helicase DbpA [Alcanivorax borkumensis SK2]
 gi|110648058|emb|CAL17534.1| ATP-dependent RNA helicase DbpA [Alcanivorax borkumensis SK2]
          Length = 459

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 137/380 (36%), Positives = 216/380 (56%), Gaps = 10/380 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L L+P+++  +   GYV  TP+Q +++PL+L+ HDV   A TG+GKTA+F L +L 
Sbjct: 5   SFASLPLTPEMLANLDALGYVTMTPVQAQSLPLLLKGHDVIAQASTGSGKTAAFGLGLLH 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L     R    + L+L PTRELA QVA    +  +       L +  G P   Q   LE
Sbjct: 65  PL---NPRYYGCQALVLCPTRELADQVAVEIRRLARGPGNIKVLTLCGGQPIGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+L H ++G L ++ +  LV+DEADRMLDMGF   I  +    P  RQT
Sbjct: 122 HGAQIVVGTPGRVLKHLSKGTLSLDGLNTLVLDEADRMLDMGFYDSIAEVIRQTPPRRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++++E F+ NP+ +EV T    ++  +  +     Q  +  A      +
Sbjct: 182 LLFSATYPPGIKQLAETFMSNPQHVEVETLHDNSQIEQRYYEVEPFQREEAVASAIACFR 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++FC  K+   ++ + L +QG S   ++ +++QR R ++L+ F   ++ ++V
Sbjct: 242 PVSC----VVFCVTKQQCQDVVNQLCRQGLSAMVLNSDLEQRERDEVLTLFANRSLSVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V N ++ +  + +IHR+GRTGRAG  G A  LVA  + +   AI
Sbjct: 298 ATDVAARGLDIDNLDMVINAELSHEPQTHIHRVGRTGRAGEKGLAINLVAPRESRRAIAI 357

Query: 361 EKLIEKKVDWLNGDLSSLNP 380
           E+L    ++W    L+SL P
Sbjct: 358 EQLQGAPLNWHP--LNSLKP 375


>gi|332670437|ref|YP_004453445.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi
           ATCC 484]
 gi|332339475|gb|AEE46058.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484]
          Length = 596

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 141/403 (34%), Positives = 213/403 (52%), Gaps = 15/403 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL   +  AV D G+V P+ IQ + +P +L   D+ G+AQTGTGKTA+F LP+L 
Sbjct: 26  TFATLGLPAPLERAVADLGFVTPSAIQSQAVPALLAGRDIVGVAQTGTGKTAAFGLPLLA 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++ G A V+     +L PTRELA QVAD    +  +      + +  G PF  Q + + 
Sbjct: 86  AVDAGTAGVQAI---VLTPTRELAMQVADAITSFATHLPGLAVVAVYGGSPFLPQQRAIA 142

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA V++ TPGR+LDH +RG L+++ +  LV+DEAD ML MGF   +  + +  P  RQ 
Sbjct: 143 RGAQVVVGTPGRVLDHLDRGTLVLDQVRYLVLDEADEMLRMGFAEDVDRVLASTPDRRQV 202

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM   +++V+E  L  P  I   T +  + T+            +        + 
Sbjct: 203 ALFSATMPAPIRRVAEQHLHQPVEI---TVARQSSTVTTVRQTYAVVPYRHKIGALGRVL 259

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       I+F   +     +  +L ++G S   I G++ Q  R KI+   + G + ++V
Sbjct: 260 AVTDADATIVFVRTRGAAEEVGSALVERGISAAHISGDVAQSDREKIVDRLRSGALDVLV 319

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  +G V NFDVP  AE Y+HRIGRTGRAGR G A + V   +   +  I
Sbjct: 320 ATDVAARGLDVERIGLVVNFDVPREAETYVHRIGRTGRAGREGVALSFVTPAEQSRLRTI 379

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           E+     ++ +      +  P E   ++ H  A      P ++
Sbjct: 380 ERTTRVTLEQVP-----IPTPAE---VSAHRVALLLGRTPARA 414


>gi|302665308|ref|XP_003024266.1| hypothetical protein TRV_01617 [Trichophyton verrucosum HKI 0517]
 gi|291188313|gb|EFE43655.1| hypothetical protein TRV_01617 [Trichophyton verrucosum HKI 0517]
          Length = 1171

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 130/438 (29%), Positives = 210/438 (47%), Gaps = 18/438 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL  + +  +   GY  PT IQ + +P ++   DV G+A+TG+GKT +F+LPM  
Sbjct: 539 KWSQCGLGVQTLDVIRKLGYEGPTSIQSQAVPAIMSGRDVIGVAKTGSGKTIAFLLPMFR 598

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R    +  P +LI+ PTRELA Q+      + K  NL      GG P + Q  +L
Sbjct: 599 HIRDQRPLENMEGPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAEL 658

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   +  
Sbjct: 659 KRGAEIIVCTPGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRP 718

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT    ++ ++   L  P  I V   S  A  I                L  
Sbjct: 719 NRQTVLFSATFPRNMEALARKTLSKPIEIIVGGRSVVAPEITQIVEVRNDDAKFVRLLEL 778

Query: 237 ---QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                   ++     ++F ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 779 LGNLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKA 838

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 839 GIFPILVATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 898

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            ++   I K +++    +   +  + N  L+K+         K        +GF  +   
Sbjct: 899 ERYSVDISKALKQSGQPVPEPIQKMVNAFLDKV---------KEGKEKASGSGFGGKGLE 949

Query: 413 YSSQKSHIPLKESEKISK 430
              Q+         K  K
Sbjct: 950 RLDQERDATRNRERKTYK 967


>gi|170594503|ref|XP_001902003.1| ATP-dependent RNA helicase P62 [Brugia malayi]
 gi|158590947|gb|EDP29562.1| ATP-dependent RNA helicase P62, putative [Brugia malayi]
          Length = 587

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 125/380 (32%), Positives = 203/380 (53%), Gaps = 7/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
           +F++ G  P ++  +  A + KPT IQ  + P+ L  HD+  IA+TG+GKT ++ LP  +
Sbjct: 189 EFSETGFPPAIIEKLKKACFEKPTVIQSISWPVALTGHDMISIARTGSGKTLAYTLPGIV 248

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               ++   +VR P  LIL PT     ++         N++  VA   GG   + Q + +
Sbjct: 249 HMQNQEQPEKVRGPAVLILAPT----RELVQQISSMAMNFHSKVACAYGGSGRDQQARTI 304

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+L   PGR+LD    G L +N    LV+DEADRMLDMGF P I+ I S++   RQ
Sbjct: 305 REGVDILAAAPGRLLDFLIAGVLNLNRCTYLVLDEADRMLDMGFEPQIRRIVSMIRPDRQ 364

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQL 238
           TL+FSAT   E++ ++++FL +P  + V +   +    I            ++  L    
Sbjct: 365 TLMFSATWPKEVRTLAKDFLSDPVFVNVGSLKLAANSNIIQLVTVVEENEKEEKLLEFLN 424

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S +     +IF   K+    L   + K+G+   ++HG+  Q  R  ++++FK G   +
Sbjct: 425 RTSSEQHCKTLIFVGMKRTADWLTRLIRKKGYPALSLHGDKSQTERNFVMNDFKNGECSI 484

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ D+ +V NFD P   E+YIHRIGRT R  + G ++TL  + D   ++
Sbjct: 485 LVATDVAARGLDVNDIKYVINFDCPKNIEDYIHRIGRTARHDKTGTSYTLCTRSDAPIVN 544

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++++    +  DL  L
Sbjct: 545 ELVSVLKEAKQTVPSDLLDL 564


>gi|84994532|ref|XP_951988.1| ATP-dependent RNA helicase [Theileria annulata strain Ankara]
 gi|65302149|emb|CAI74256.1| ATP-dependent RNA helicase, putative [Theileria annulata]
          Length = 455

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 125/421 (29%), Positives = 206/421 (48%), Gaps = 9/421 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+  ++  A  + G+  PT IQI+ IP+ L   D+ G+A+TG+GKTA+F +P+L 
Sbjct: 42  TFEDLGVCVELCRACKELGWKTPTKIQIEAIPIALSGKDIIGLAETGSGKTAAFTIPILQ 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+    +LIL PTREL+ Q+ +         ++ + L    +      +  ++
Sbjct: 102 KLLEKPQRLF---SLILAPTRELSLQIKEQLISLEIGLDVCLILGGLDM-VSQALQLSKK 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++           N     +  I+ LV+DEAD++L   F   +  I   +P  + T 
Sbjct: 158 PHIIVGSPGRIADHLQNTKGFSLETIKYLVLDEADKLLSADFDDSLNKIIISLPKDKVTY 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SATMT ++ K+ +  L  P +I VNT   T E +   ++       K        +  
Sbjct: 218 LYSATMTSKITKLQKVTLMKPIQINVNTKYHTNELLIQKYLLIPL---KFKYTYLACILW 274

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + +    ++FCN       +   L+   F    +HG + Q  R+  L++FK G   ++V 
Sbjct: 275 KYSTSTIMVFCNTCLTSQKVTLFLQNLSFKSVCLHGKLSQIQRLNSLNSFKTGLFNILVV 334

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ +RG+DIP V  V NFDVPN +++YIHR+GRT RAG+ G + TL+ + DI+    IE
Sbjct: 335 TDVGSRGIDIPFVDLVINFDVPNTSKDYIHRVGRTARAGKSGISLTLITQYDIEAFQRIE 394

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
             + KK++    D+S       K D   ++   +     +K       KKN    KS   
Sbjct: 395 YALNKKLEEYK-DISE-EEVYSKYDECCNSLRNEEMDHKKKFQLIKTNKKNQKYNKSKFK 452

Query: 422 L 422
           L
Sbjct: 453 L 453


>gi|310794364|gb|EFQ29825.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 695

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 131/396 (33%), Positives = 209/396 (52%), Gaps = 21/396 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L
Sbjct: 192 LTFSNPPLDDHLISNIEMARYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPIL 251

Query: 61  TILE--------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
           +                  GR R   P +LIL PTREL +Q+ +   K+     +   ++
Sbjct: 252 SQAFINGPSTVPPNAAGGFGRQRKAYPTSLILAPTRELVSQIYEESRKFAYRSWVRPCVV 311

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 312 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQ 371

Query: 167 IQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 372 IRRIVEGEDMPNVQNRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVE 431

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +        +         +IF   K+   +L   L  Q F   +IHG+  QR
Sbjct: 432 YVEDVDKRSV---LLDILHTHGAGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQR 488

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 489 ERERALEFFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 548

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G +     + +   +  + +L+++    +   L ++
Sbjct: 549 GHSTAFFNRGNRGVVRELLELLKEANQEVPSFLETI 584


>gi|255961279|ref|YP_346703.3| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens Pf0-1]
 gi|77381201|gb|ABA72714.1| ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 492

 Score =  144 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 127/373 (34%), Positives = 205/373 (54%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ + +   L   D  G AQTGTGKTA+F++ ++T 
Sbjct: 104 FHDFKLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLISIITQ 163

Query: 63  ----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ-NK 117
                      +  PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q   
Sbjct: 164 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKH 223

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG + ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 224 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 283

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT TD++  +++ +  +P  +E+   +   E +E    A       K    
Sbjct: 284 SERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEVTNVANENVEQHIYAVAGADKYKLLFN 343

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                + +  +  I+F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 344 L---VNDNGWERVIVFANRKDEVRRIEERLVRDGINAAQLSGDVPQHKRIKTLEGFREGK 400

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 401 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 460

Query: 356 HIDAIEKLIEKKV 368
            + +IE+ + +K+
Sbjct: 461 QLPSIEEKLGRKI 473


>gi|222618647|gb|EEE54779.1| hypothetical protein OsJ_02176 [Oryza sativa Japonica Group]
          Length = 429

 Score =  144 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 160/376 (42%), Gaps = 3/376 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 50  FRDFLLKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQ 109

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    +V                   + F KY     + V      I       K +  
Sbjct: 110 IDPVAGQVGALVLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCP 169

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +     +   L N    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 170 HIVVGTPGRILALAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVMM 229

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  I V+  +              ++  K        L   
Sbjct: 230 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNR--KLNDLLDA 287

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L +  F   +IH  + Q  R+    NFKEG  +++VA+
Sbjct: 288 LDFNQVVIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVAT 347

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKHIDAIE 361
           DL  RG+DI  V  V N+D+P+ A++Y+HR+GR GR G  G A T V+   D   ++ ++
Sbjct: 348 DLVGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQ 407

Query: 362 KLIEKKVDWLNGDLSS 377
           +  E  +  L   + +
Sbjct: 408 ERFEVDIKELPEQIDT 423


>gi|115437444|ref|NP_001043297.1| Os01g0549700 [Oryza sativa Japonica Group]
 gi|113532828|dbj|BAF05211.1| Os01g0549700 [Oryza sativa Japonica Group]
          Length = 495

 Score =  144 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 160/376 (42%), Gaps = 3/376 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 116 FRDFLLKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQ 175

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    +V                   + F KY     + V      I       K +  
Sbjct: 176 IDPVAGQVGALVLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCP 235

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +     +   L N    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 236 HIVVGTPGRILALAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVMM 295

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  I V+  +              ++  K        L   
Sbjct: 296 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNR--KLNDLLDA 353

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L +  F   +IH  + Q  R+    NFKEG  +++VA+
Sbjct: 354 LDFNQVVIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVAT 413

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKHIDAIE 361
           DL  RG+DI  V  V N+D+P+ A++Y+HR+GR GR G  G A T V+   D   ++ ++
Sbjct: 414 DLVGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQ 473

Query: 362 KLIEKKVDWLNGDLSS 377
           +  E  +  L   + +
Sbjct: 474 ERFEVDIKELPEQIDT 489


>gi|143456603|sp|Q0JM17|RH56_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 56
 gi|57899406|dbj|BAD88053.1| putative HLA-B associated transcript 1 [Oryza sativa Japonica
           Group]
 gi|215695226|dbj|BAG90417.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258618301|gb|ACV83946.1| DExD box helicase protein HLA-B associated transcript 1 [Oryza
           sativa Japonica Group]
          Length = 432

 Score =  144 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 160/376 (42%), Gaps = 3/376 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 53  FRDFLLKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQ 112

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    +V                   + F KY     + V      I       K +  
Sbjct: 113 IDPVAGQVGALVLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCP 172

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +     +   L N    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 173 HIVVGTPGRILALAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVMM 232

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  I V+  +              ++  K        L   
Sbjct: 233 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNR--KLNDLLDA 290

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L +  F   +IH  + Q  R+    NFKEG  +++VA+
Sbjct: 291 LDFNQVVIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVAT 350

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKHIDAIE 361
           DL  RG+DI  V  V N+D+P+ A++Y+HR+GR GR G  G A T V+   D   ++ ++
Sbjct: 351 DLVGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQ 410

Query: 362 KLIEKKVDWLNGDLSS 377
           +  E  +  L   + +
Sbjct: 411 ERFEVDIKELPEQIDT 426


>gi|115437448|ref|NP_001043298.1| Os01g0550000 [Oryza sativa Japonica Group]
 gi|75320875|sp|Q5JK84|RH15_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 15
 gi|57899408|dbj|BAD88055.1| putative HLA-B associated transcript 1 [Oryza sativa Japonica
           Group]
 gi|57900053|dbj|BAD88115.1| putative HLA-B associated transcript 1 [Oryza sativa Japonica
           Group]
 gi|113532829|dbj|BAF05212.1| Os01g0550000 [Oryza sativa Japonica Group]
 gi|215768539|dbj|BAH00768.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218188434|gb|EEC70861.1| hypothetical protein OsI_02373 [Oryza sativa Indica Group]
          Length = 432

 Score =  144 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 160/376 (42%), Gaps = 3/376 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 53  FRDFLLKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQ 112

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    +V                   + F KY     + V      I       K +  
Sbjct: 113 IDPVAGQVGALVLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCP 172

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +     +   L N    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 173 HIVVGTPGRILALAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVMM 232

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  I V+  +              ++  K        L   
Sbjct: 233 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNR--KLNDLLDA 290

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L +  F   +IH  + Q  R+    NFKEG  +++VA+
Sbjct: 291 LDFNQVVIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVAT 350

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKHIDAIE 361
           DL  RG+DI  V  V N+D+P+ A++Y+HR+GR GR G  G A T V+   D   ++ ++
Sbjct: 351 DLVGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQ 410

Query: 362 KLIEKKVDWLNGDLSS 377
           +  E  +  L   + +
Sbjct: 411 ERFEVDIKELPEQIDT 426


>gi|322703781|gb|EFY95385.1| ATP-dependent RNA helicase ded-1 [Metarhizium anisopliae ARSEF 23]
          Length = 665

 Score =  144 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 133/396 (33%), Positives = 206/396 (52%), Gaps = 21/396 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F    L   +   +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L
Sbjct: 176 LQFTTPPLDEHLCRNIELAHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPIL 235

Query: 61  TILE--------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
           +                  GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 236 SQAFINGPSPVPANAAGQFGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVV 295

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 296 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQ 355

Query: 167 IQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 356 IRRIVEGEDMPPVADRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVE 415

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +        +         +IF   K+   +L   L  Q F   +IHG+  QR
Sbjct: 416 FVEDIDKRSV---LLDILHTHAGGLTLIFVETKRMADSLSDFLINQSFPATSIHGDRTQR 472

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 473 ERERALEFFRNGRCPILVATAVAARGLDIPNVTHVINYDLPTDVDDYVHRIGRTGRAGNT 532

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A     + +   +  + +L+++    +   L ++
Sbjct: 533 GIATAFFNRGNRGIVRELMELLKEANQEVPPFLEAI 568


>gi|322696164|gb|EFY87960.1| ATP-dependent RNA helicase DED1 [Metarhizium acridum CQMa 102]
          Length = 666

 Score =  144 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 133/396 (33%), Positives = 206/396 (52%), Gaps = 21/396 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F    L   +   +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L
Sbjct: 182 LQFTTPPLDEHLCRNIELAHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPIL 241

Query: 61  TILE--------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
           +                  GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 242 SQAFINGPSPVPANAAGQFGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVV 301

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 302 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQ 361

Query: 167 IQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 362 IRRIVEGEDMPPVADRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVE 421

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +        +         +IF   K+   +L   L  Q F   +IHG+  QR
Sbjct: 422 FVEDIDKRSV---LLDILHTHAGGLTLIFVETKRMADSLSDFLINQSFPATSIHGDRTQR 478

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 479 ERERALEFFRNGRCPILVATAVAARGLDIPNVTHVINYDLPTDVDDYVHRIGRTGRAGNT 538

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A     + +   +  + +L+++    +   L ++
Sbjct: 539 GIATAFFNRGNRGIVRELMELLKEANQEVPPFLEAI 574


>gi|152988314|ref|YP_001347045.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
 gi|150963472|gb|ABR85497.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
          Length = 441

 Score =  144 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 132/373 (35%), Positives = 203/373 (54%), Gaps = 3/373 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ A+    + +PTP+Q   IP  L+  D+   AQTG+GKTA+F+LP+L  
Sbjct: 2   FSQFPLHERLLKALDSLSFSEPTPVQAAAIPQALEGRDLRVTAQTGSGKTAAFLLPLLNR 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L        + R LIL PTRELA Q     E++ +   +   L+ GG  F+ Q  +L + 
Sbjct: 62  LLAEEKPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRKN 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +++I TPGR+L+  N G L + +IE+LV+DEADRMLDMGF   +  + +  P  RQTLL
Sbjct: 122 PEIVIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAERQTLL 181

Query: 183 FSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT +   L KV    L+ P+ + +N      E +    +       K    L Q L  
Sbjct: 182 FSATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVITADDVAHK--EQLLQWLLG 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +T    I+F N + +   L   L      V  +HG  DQ+ R   +   K+G ++++VA
Sbjct: 240 NETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + ++E
Sbjct: 300 TDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHNDWNLMSSVE 359

Query: 362 KLIEKKVDWLNGD 374
           + +++  +  N  
Sbjct: 360 RYLKQHFERRNIK 372


>gi|15598662|ref|NP_252156.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|254236418|ref|ZP_04929741.1| hypothetical protein PACG_02400 [Pseudomonas aeruginosa C3719]
 gi|9949609|gb|AAG06854.1|AE004767_5 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|126168349|gb|EAZ53860.1| hypothetical protein PACG_02400 [Pseudomonas aeruginosa C3719]
          Length = 446

 Score =  144 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 134/373 (35%), Positives = 205/373 (54%), Gaps = 3/373 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ A+    + +PTP+Q   IP  L+ HD+   AQTG+GKTA+F+LP+L  
Sbjct: 7   FSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFLLPLLHR 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L        + R LIL PTRELA Q     E++ +   +   L+ GG  F+ Q  +L + 
Sbjct: 67  LLAEDKPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRKN 126

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +++I TPGR+L+  N G L + +IE+LV+DEADRMLDMGF   +  + +  P  RQTLL
Sbjct: 127 PEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAERQTLL 186

Query: 183 FSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT +   L KV    L+ P+ + +N      E +    +       K    L Q L S
Sbjct: 187 FSATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVITADDVAHK--EQLLQWLLS 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +T    I+F N + +   L   L      V  +HG  DQ+ R   +   K+G ++++VA
Sbjct: 245 NETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKILVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + ++E
Sbjct: 305 TDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDWNLMSSVE 364

Query: 362 KLIEKKVDWLNGD 374
           + +++  +  N  
Sbjct: 365 RYLKQNFERRNIK 377


>gi|326491859|dbj|BAJ98154.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 786

 Score =  144 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 146/414 (35%), Positives = 218/414 (52%), Gaps = 12/414 (2%)

Query: 2   DFADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           DF +   + P V+  V +  + KPTPIQ ++ P+     D+  IA+TG+GKT SF LP+L
Sbjct: 368 DFKEASTIFPSVIMKVTEK-FTKPTPIQAQSWPIARSGRDIIAIAETGSGKTLSFGLPIL 426

Query: 61  TILEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             +   +       R P  L+L PTRELA Q AD  E  G    L    + GG P E   
Sbjct: 427 AQILSKQNSTSGGKRTPLMLVLAPTRELAMQTADVCEAAGATCGLKTLCVYGGSPREGNV 486

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K L+ G D+LI TPGR++D    G  +++ ++ LV+DEADRMLDMGF P I+ I + VP 
Sbjct: 487 KALKAGVDLLIATPGRLIDLLQEGVAVLDKVQHLVLDEADRMLDMGFEPAIRQIIAAVPK 546

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST------AETIEHCFVATYAQYSK 230
           TRQTL+FSAT    +Q ++  FL+ P ++ +               +         +  +
Sbjct: 547 TRQTLMFSATWPLSIQSLANEFLREPAKVTIGVKQEQSDGPTANRRVTQIVEVMTYRDKE 606

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
                      +      ++F   KK    +  +L ++G+ V  IHG+  Q  R K + +
Sbjct: 607 HRLQDLLHKLHKSRKNRILVFALYKKEAERIEQTLRRKGWKVQGIHGDKSQALRSKAIES 666

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   L+VA+D+AARGLDIPDV +V N+  P   E+Y+HRIGRTGRAG+ G A+T   
Sbjct: 667 FRSGEEPLLVATDVAARGLDIPDVEYVINYTFPLTIEDYVHRIGRTGRAGKTGTAYTFFT 726

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
            ED  H   +++++ +    +  DL S    ++K + A +    K     QK+T
Sbjct: 727 DEDKTHAGELQQVLREANQDIPQDLMSYGAHVKKKEHALYGAHFKKLDTNQKAT 780


>gi|315042594|ref|XP_003170673.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Arthroderma
           gypseum CBS 118893]
 gi|311344462|gb|EFR03665.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Arthroderma
           gypseum CBS 118893]
          Length = 1183

 Score =  144 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 129/437 (29%), Positives = 211/437 (48%), Gaps = 16/437 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL  + +  +   GY  PT IQ + +P ++   DV G+A+TG+GKT +F+LPM  
Sbjct: 551 KWSQCGLGVQTLDVIRKLGYEGPTSIQSQAVPAIMSGRDVIGVAKTGSGKTIAFLLPMFR 610

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R    +  P +LI+ PTRELA Q+      + K  NL      GG P + Q  +L
Sbjct: 611 HIRDQRPLENMEGPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAEL 670

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   +  
Sbjct: 671 KRGAEIIVCTPGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRP 730

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT    ++ ++   L  P  I V   S  A  I                L  
Sbjct: 731 NRQTVLFSATFPRNMEALARKTLSKPIEIIVGGRSVVAPEITQIVEVRNDDAKFVRLLEL 790

Query: 237 ---QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                   ++     ++F ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 791 LGNLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKA 850

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 851 GIFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 910

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            ++   I K +++    +         P++K+  A  +  ++       S GF  +    
Sbjct: 911 ERYSVDISKALKQSGQPVP-------EPVQKMVTAFLDKVKEGKEKASGS-GFGGKGLER 962

Query: 414 SSQKSHIPLKESEKISK 430
             Q+         K  K
Sbjct: 963 LDQERDATRNRERKTYK 979


>gi|313108824|ref|ZP_07794809.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
 gi|310881311|gb|EFQ39905.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
          Length = 441

 Score =  144 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 134/373 (35%), Positives = 205/373 (54%), Gaps = 3/373 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ A+    + +PTP+Q   IP  L+ HD+   AQTG+GKTA+F+LP+L  
Sbjct: 2   FSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFLLPLLHR 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L        + R LIL PTRELA Q     E++ +   +   L+ GG  F+ Q  +L + 
Sbjct: 62  LLAEDKPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRKN 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +++I TPGR+L+  N G L + +IE+LV+DEADRMLDMGF   +  + +  P  RQTLL
Sbjct: 122 PEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAERQTLL 181

Query: 183 FSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT +   L KV    L+ P+ + +N      E +    +       K    L Q L S
Sbjct: 182 FSATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVITADDVAHK--EQLLQWLLS 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +T    I+F N + +   L   L      V  +HG  DQ+ R   +   K+G ++++VA
Sbjct: 240 NETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + ++E
Sbjct: 300 TDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDWNLMSSVE 359

Query: 362 KLIEKKVDWLNGD 374
           + +++  +  N  
Sbjct: 360 RYLKQNFERRNIK 372


>gi|294852360|ref|ZP_06793033.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NVSL 07-0026]
 gi|294820949|gb|EFG37948.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NVSL 07-0026]
          Length = 488

 Score =  144 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 146/385 (37%), Positives = 224/385 (58%), Gaps = 6/385 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG++  ++  V  AG  +P PIQ + IP  L+  D+ GIAQTG+GKTA+F LP+L  
Sbjct: 89  FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGRDILGIAQTGSGKTAAFSLPILQK 148

Query: 63  LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     + R +  R LIL PTRELA Q+        K+ +++ AL++GG+   +Q K++ 
Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR+ D    G + ++    LV+DEADRMLDMGFI  ++ I       RQT
Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  ++E  L++P R+EV    +TA  I       +   +K+   L   + 
Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEI---TQVVHPVPTKEKRRLLSAML 325

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   M++ I+F   K     +   LE+  + V AIHGN  Q +R + L+ F++GT++++V
Sbjct: 326 TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P + HV N+D+P+  E Y+HRIGRTGR G  G + TL     +   + A
Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRA 445

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384
           +E++   K+   +  +     P+ K
Sbjct: 446 VERVTRSKLSIKDAPVKLAPAPVAK 470


>gi|107102999|ref|ZP_01366917.1| hypothetical protein PaerPA_01004068 [Pseudomonas aeruginosa PACS2]
 gi|296388016|ref|ZP_06877491.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 441

 Score =  144 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 134/373 (35%), Positives = 205/373 (54%), Gaps = 3/373 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ A+    + +PTP+Q   IP  L+ HD+   AQTG+GKTA+F+LP+L  
Sbjct: 2   FSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFLLPLLHR 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L        + R LIL PTRELA Q     E++ +   +   L+ GG  F+ Q  +L + 
Sbjct: 62  LLAEDKPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRKN 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +++I TPGR+L+  N G L + +IE+LV+DEADRMLDMGF   +  + +  P  RQTLL
Sbjct: 122 PEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAERQTLL 181

Query: 183 FSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT +   L KV    L+ P+ + +N      E +    +       K    L Q L S
Sbjct: 182 FSATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVITADDVAHK--EQLLQWLLS 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +T    I+F N + +   L   L      V  +HG  DQ+ R   +   K+G ++++VA
Sbjct: 240 NETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + ++E
Sbjct: 300 TDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDWNLMSSVE 359

Query: 362 KLIEKKVDWLNGD 374
           + +++  +  N  
Sbjct: 360 RYLKQNFERRNIK 372


>gi|195115088|ref|XP_002002099.1| GI14145 [Drosophila mojavensis]
 gi|193912674|gb|EDW11541.1| GI14145 [Drosophila mojavensis]
          Length = 837

 Score =  144 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 119/389 (30%), Positives = 193/389 (49%), Gaps = 28/389 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +++ G  P+++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L+
Sbjct: 410 SWSESGFPPEIIEIIDSVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLS 469

Query: 62  ILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            ++            + P  +I+ PTRELA Q+ +   K+G+   +   +++GG+  E Q
Sbjct: 470 WIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETIKFGQPLGIRTVVVVGGLSREEQ 529

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 530 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 589

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            T           ++    +    +  ++  + T +                        
Sbjct: 590 VTNLKPDTEEAEDEKKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV 649

Query: 215 -ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            +  E      Y             + S       IIF NQKK    L   LEK G++ C
Sbjct: 650 GKPTERTNQIVYMMGENDKRKKLMQILSAGIEPPVIIFVNQKKGADVLAKGLEKLGYNSC 709

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            +HG   Q  R   L+  K G   ++VA+D+A RG+DI DV  V N+D+    E+Y HRI
Sbjct: 710 TLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTHRI 769

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           GRTGRAG+ G A + V K+D      +++
Sbjct: 770 GRTGRAGKTGVAISFVTKDDSSLFYDLKQ 798


>gi|33151461|ref|NP_872814.1| ATP-dependent RNA helicase SrmB [Haemophilus ducreyi 35000HP]
 gi|33147681|gb|AAP95203.1| ATP-dependent RNA helicase protein [Haemophilus ducreyi 35000HP]
          Length = 442

 Score =  144 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 135/434 (31%), Positives = 227/434 (52%), Gaps = 6/434 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + FA+L L+P ++ A+   GY +PT +Q +TIP  L   D+ G A TGTGKTA+F+LP +
Sbjct: 8   VTFAELDLAPALLKALAKKGYTRPTSVQAETIPYALAGRDLLGSAPTGTGKTAAFLLPAI 67

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+  R +   PR LIL PTRELA QVA+  + +     L++A + GG+ ++   +  
Sbjct: 68  QHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAAFTTLSIATITGGVAYQNHGEVF 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+++ TPGR++ +          +E+L++DEADRML MGF   ++ I +   + + 
Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEVLILDEADRMLQMGFGQDVEKIVAETRWRKY 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT+  EL       +       +N   S  E  +      +A   +    L   +
Sbjct: 188 TWLFSATLEGELLTDFSERILTDPLH-INADPSRRERKKIQQWYYHADNVEHKTKLLARI 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +   M+  I+F  ++++V  L  +L K+      + G++ Q  R + ++  KEG + ++
Sbjct: 247 ITTIEMEKVIVFVRRREDVRTLSDTLRKRAIRSTYLEGDMAQTQRNQAITRLKEGGVNVL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI +V +V NFD+P   + Y+HRIGRT RAG+ G A +LV   D K +  
Sbjct: 307 VATDVAARGIDIDEVDYVINFDLPYSEDTYLHRIGRTARAGKKGSAISLVEAHDYKLLGK 366

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           I++  ++ +      +  L P  +     + N    +     +       KK  +  K  
Sbjct: 367 IKRYTQEALK--PRIVEGLEPRTKAPKDGELNST--SKKAKARLKKRKEAKKIEAKTKLK 422

Query: 420 IPLKESEKISKLQQ 433
           +  KES+ I K ++
Sbjct: 423 VRHKESKNIGKRRK 436


>gi|327296165|ref|XP_003232777.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Trichophyton
           rubrum CBS 118892]
 gi|326465088|gb|EGD90541.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Trichophyton
           rubrum CBS 118892]
          Length = 811

 Score =  144 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 124/433 (28%), Positives = 204/433 (47%), Gaps = 37/433 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +++ GL  +++  +   GY  P+PIQ  +IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 369 SWSESGLPKRLLEIIDSVGYKDPSPIQRVSIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 428

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                    E    R   P  +IL PTRELA Q+     K+    N  V  ++GG   E 
Sbjct: 429 YISSLPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEE 488

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 489 QAYNLRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 548

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ------- 227
           P + +          +            ++  + T +  +                    
Sbjct: 549 PVSNEKPDSEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 608

Query: 228 -----------------YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
                              K+   L ++L S++     I+F N K+N   +   ++  GF
Sbjct: 609 IGEAVDTVEQRVEFVSGEDKRKKRLAEILTSREYRPPIIVFVNIKRNCDAVARDIKHMGF 668

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++    E+Y 
Sbjct: 669 SAVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYT 728

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ 
Sbjct: 729 HRIGRTGRAGKSGIAITFLGSEDNDVLYDLKQML------MKSSISRVPEELRKHEAAQS 782

Query: 391 NHARKNNPIPQKS 403
              R      QK 
Sbjct: 783 KPIRGMGAAGQKK 795


>gi|184154996|ref|YP_001843336.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
 gi|183226340|dbj|BAG26856.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
          Length = 460

 Score =  144 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 123/452 (27%), Positives = 208/452 (46%), Gaps = 22/452 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L+  +  A+ D  + +PT +Q + IPL+L    V G ++TG+GKT +F+LP+ +
Sbjct: 4   SFADLHLADFLTPALKDLHFERPTAVQARVIPLILNGKSVVGQSRTGSGKTHAFLLPIFS 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L      V+   T             A    ++          + G        +   R
Sbjct: 64  QLAPNNQTVQAVITTPSRELAYQIYNAAKQLNRFATTPLTIHNYVGGTDKEHQVEQLNRR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD  N   L ++     VIDEAD  LDMGF+  +  I +  P   Q +
Sbjct: 124 QPQLVIGTPGRILDLINSQALDIHTASQFVIDEADMTLDMGFLETVDQIAARFPEKLQMM 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+   L+   + +L+NP   E+ T +     +E+  ++T  +             +
Sbjct: 184 VFSATIPQGLRPFLKKYLENPVIEEIPTETVINPNVENWLMSTKGRDKNDLVYRLL---T 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F N +     L + L+++G  V  IHG ++ R+R + +   ++   Q +VA
Sbjct: 241 LGDPYLALVFANTRDRATELANYLQERGLKVALIHGGLEPRARKRTMRQIRDMDYQYIVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+D+  V  V N D+P+  E +IHR+GRTGRA   G A TL A  +      IE
Sbjct: 301 TDLAARGIDLEGVSLVLNDDIPSDLEYFIHRVGRTGRANMAGTAITLYAPAEDVL---IE 357

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI-------------PQKSTGFDR 408
           KL E+ + ++  DL +    +   D  +    R+                  +   G+ R
Sbjct: 358 KLEERGITFIPKDLKNGRI-VTTYDRNRRKAHRRKKAALDPTVKGFVKKAKKKVKPGYKR 416

Query: 409 RKKNYSSQKSHIPLKESEK--ISKLQQDIQEN 438
           R K    +     +K++++  + K ++  Q+ 
Sbjct: 417 RIKQRIKEDERQKVKQAQRHEMRKAKRARQKQ 448


>gi|119944643|ref|YP_942323.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119863247|gb|ABM02724.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 439

 Score =  144 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 125/439 (28%), Positives = 219/439 (49%), Gaps = 9/439 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M   DL +  +++ ++   G+ + T IQ K +P+ +   D+   ++TG+GKT +++LP M
Sbjct: 1   MLIDDLPVDRRLIISLSHLGFTETTEIQAKAVPIAVAGKDLLASSKTGSGKTLAYLLPAM 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +L+      R PR LIL PTRELA QV         N +L   L+ GG  F  Q K L
Sbjct: 61  QRVLKTRALTKRDPRVLILTPTRELAKQVYAQLRLLVSNTSLKSTLVSGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++    ++ TPGRI+DH  +G L +  +E+L++DEADRMLD+GF   ++ + S      +
Sbjct: 121 DKDPHFVVGTPGRIVDHLKKGLLHLEGLELLILDEADRMLDLGFAEQLKAVNSAANHRLR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +      +            + +       +  E       A    +   L    
Sbjct: 181 QTLLFSATLGHAEVNEFASELLKAPVRIAIGEENQQHSEISQRFYLADNLNQKEKLLFHF 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              + +K  IIF   + +   L  +L ++G+   A+HG++ Q +R  I+ +F  G  QL+
Sbjct: 241 IKNEEIKQAIIFTATRLDAQRLSAALSEKGYGTLALHGDLTQNNRNSIMDSFSRGKAQLL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+ +V HV NFD+P   E YIHRIGRTGRAG  G A +++  +D  +   
Sbjct: 301 VTTDIASRGLDLLNVSHVINFDIPKHTEEYIHRIGRTGRAGEKGDAISIIGPKDWVNFKK 360

Query: 360 IEKLIEKKVDW--LNGDLSSLNPPLEKI------DIAQHNHARKNNPIPQKSTGFDRRKK 411
           +E+ +++++ +  ++G        +EK+       +  H   +K +   +K      +  
Sbjct: 361 VEEFVQRQLTFNRVDGIKPQFKGIVEKVVKAPETKVVSHKAEKKQSSKTRKPKAAPNKIF 420

Query: 412 NYSSQKSHIPLKESEKISK 430
           + + +    P++  +KI +
Sbjct: 421 HEAEEAGFTPMRRKKKIEE 439


>gi|327554933|gb|AEB00820.1| vasa-like protein [Penaeus monodon]
          Length = 707

 Score =  144 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 125/386 (32%), Positives = 198/386 (51%), Gaps = 16/386 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P ++  +  AGY  PTP+Q  TIP V+   D+ G AQTG+GKTA+F+LPML 
Sbjct: 266 SFQTMNLRPLLLENIAKAGYGCPTPVQKYTIPNVMNGRDIMGCAQTGSGKTAAFLLPMLH 325

Query: 62  ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +               P  L++ PTRELA Q+     K+  +      +  GG     Q
Sbjct: 326 HILDNNCPSNAFEEPAQPTGLVICPTRELAIQIMREARKFSHSSVAKCCVAYGGAAGFHQ 385

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF----IPYIQNIT 171
            K +  G  +L+ TPGR+LD   +GK++ ++++ LV+DEADRMLDMGF       I + T
Sbjct: 386 LKTIHSGCHILVATPGRLLDFVEKGKVVFSSLKYLVLDEADRMLDMGFLSSIKTVINHKT 445

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 R TL+FSAT  +E+Q+++  FL N   + V +  +    ++   +       K 
Sbjct: 446 MTPTTDRITLMFSATFPNEIQELASAFLNNYLFVVVGSVGAANTDVKQEVLCVPKFEKKA 505

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSN 290
             +        +     I+   ++K V +   +   ++ F    +HG+  Q  R + L+ 
Sbjct: 506 KLVEMCEEILINAEDEKILVFVEQKRVADFVGTYLCEKNFRATTMHGDRYQAQREQALTE 565

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI  +G V N+D+P   + Y+HRIGRTGR G  G + +   
Sbjct: 566 FRTGVYNILVATAVAARGLDIKGIGVVVNYDLPKEIDEYVHRIGRTGRLGNRGLSISFYD 625

Query: 351 KE-DIKHIDAIEKLI---EKKV-DWL 371
           +E D      + K++   E+ + DWL
Sbjct: 626 EEADACLTKDLVKVLSEAEQTIPDWL 651


>gi|325521922|gb|EGD00628.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. TJI49]
          Length = 464

 Score =  144 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 151/422 (35%), Positives = 221/422 (52%), Gaps = 24/422 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GYV  TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L+ 
Sbjct: 9   FSALPLTPAALANLAQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + ++L PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 69  LDA---RRFDVQAMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  L P TRQTL
Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLQLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ F     R                    Y     +      +L +
Sbjct: 186 LFSATYPDGIAKLSQQF----LRNPKEVKLEERHDDSKIRQRFYEVTETERLHAVGMLLN 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 242 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 361

Query: 362 KLIEKKVDWLN-GDL-----SSLNPPLEKIDIAQHNHARKNNPIP-------QKSTGFDR 408
           +  ++ V+W    +L      +L PP+E + I      RK+   P           GFD 
Sbjct: 362 QAQKRDVEWHPLAELKPASDQTLLPPMETLQIL---GGRKDKIRPGDVLGALTGDAGFDG 418

Query: 409 RK 410
           ++
Sbjct: 419 KQ 420


>gi|322789368|gb|EFZ14680.1| hypothetical protein SINV_13808 [Solenopsis invicta]
          Length = 420

 Score =  144 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 90/375 (24%), Positives = 169/375 (45%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 44  FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 103

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY ++  + V      I  + +  K    
Sbjct: 104 LEWTENQVYVLVMCHTRELAFQISKEYERFSKYMQHVKVGVFFGGLPIQKDEEVLKTVCP 163

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L +    ++ +    +  +     +Q I    P ++Q ++
Sbjct: 164 HIVVGTPGRILALVRNKKLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHSKQVMM 223

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ +++ V + F+Q+P  + V+  +               +  K   L +      
Sbjct: 224 FSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLNGLQQHYVKLKENEKNKKLFEL--LDV 281

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F    IH  + Q  R+     FK+   +++VA+
Sbjct: 282 LEFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVAT 341

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A TLV+ E D K ++ ++
Sbjct: 342 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITLVSDESDAKILNDVQ 401

Query: 362 KLIEKKVDWLNGDLS 376
           +  +  +  L  ++ 
Sbjct: 402 ERFDVNITELPDEID 416


>gi|294899003|ref|XP_002776456.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
           50983]
 gi|239883447|gb|EER08272.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
           50983]
          Length = 977

 Score =  144 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 127/393 (32%), Positives = 196/393 (49%), Gaps = 28/393 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  +  A+   GY +PTPIQ K IP +L   DV  +A+TG+GKTA+FV+PM   
Sbjct: 32  FQTMGLSDPLFKAIQKMGYNQPTPIQRKAIPAILGGSDVVAMARTGSGKTAAFVIPM-IQ 90

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + KG + V   R +IL PTRELA Q        GK  +L + L++GG   E+Q  +L   
Sbjct: 91  ILKGHSEVVGARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVGGHSMESQFDRLSSN 150

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLICTPGR++ H     L +  ++ +V DEADR+ +MGF   +Q+I    P +RQ LL
Sbjct: 151 PDVLICTPGRLVHHMVEADLSLQRVQYIVFDEADRLFEMGFADDMQSILKATPPSRQCLL 210

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK----------- 231
           FSAT+  +L + S   L++     +        +        Y     K           
Sbjct: 211 FSATLPSQLTQFSRAGLRSESTQFIRLDVEHTISDTLDLWFLYTTADSKPAALVALLRKL 270

Query: 232 ----------------CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
                                +  +        I+F   + NV      L + G +   I
Sbjct: 271 QSMSNKSTGDATGVAGVEGKSKGGKKGPRSSKTIVFVATRHNVEFFASLLTQVGITNAPI 330

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           +G++DQ  R   LS F+ G   +++ +D+AARG+DIP + +V N+D P+ ++ ++HR GR
Sbjct: 331 YGSMDQTQRTSSLSKFRSGKASVLLVTDVAARGIDIPQLDYVINYDFPSSSKLFVHRCGR 390

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           T RAG  G   +LV  +D+ +   +   + +K+
Sbjct: 391 TARAGAKGLCASLVTHDDMPYAVELMLFLGRKL 423


>gi|167382487|ref|XP_001736127.1| DEAD box ATP-dependent RNA helicase [Entamoeba dispar SAW760]
 gi|165901566|gb|EDR27644.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba dispar
           SAW760]
          Length = 684

 Score =  144 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 211/386 (54%), Gaps = 5/386 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+ + +  VL  GY  PTPIQ K IP +L+ +D+  +A+TG+GKTA++++P++  
Sbjct: 15  FQSMGLNKQTLLGVLKKGYRVPTPIQRKAIPAILRGNDIIAMARTGSGKTAAYLVPIINR 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE         R+LI+ PTRELA Q    F + GK  NL  +L+IGG     Q   L  G
Sbjct: 75  LETHSTEG--VRSLIICPTRELALQTIKVFNELGKLTNLKASLIIGGSKLSDQFDNLSSG 132

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+        + +N +E++  DEAD M + GF   + +I  ++P TRQ LL
Sbjct: 133 PDIIVATPGRLTFILEGANISLNRVEMVCFDEADLMFESGFSEQVSDIMRMLPPTRQILL 192

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L +  +N L+ P+ I ++T    +  +   F     ++ K+  LL  LL   
Sbjct: 193 FSATLPRNLAEFLKNTLKQPEIIRLDTEERLSPDL-DNFFYHVKEHEKEGHLLYLLLDLI 251

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  ++FC  +  V  L   L+        + G  DQ+ R   L  F++    +++ +
Sbjct: 252 GDKEQTVVFCATRHEVEYLNEVLKIFDIKTSMMFGKADQQEREINLKKFRKQETHVLLVT 311

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE- 361
           D+AARG+DIP++ +V N+D P   + YIHR GR  RAGR GK +  V  +++ ++  ++ 
Sbjct: 312 DVAARGVDIPELDNVINYDFPATPKLYIHRCGRVARAGRMGKCYNFVQTDEVGYLMDLQV 371

Query: 362 -KLIEKKVDWLNGDLSSLNPPLEKID 386
             L  K++++     S ++P + +I 
Sbjct: 372 FALENKEIEFGVIPRSFIDPYIYQIQ 397


>gi|169850031|ref|XP_001831713.1| ATP-dependent RNA helicase ded-1 [Coprinopsis cinerea okayama7#130]
 gi|116507149|gb|EAU90044.1| ATP-dependent RNA helicase ded-1 [Coprinopsis cinerea okayama7#130]
          Length = 653

 Score =  144 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 130/395 (32%), Positives = 200/395 (50%), Gaps = 18/395 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F    L P ++  +  A Y  PTP+Q  +IP+V    D+   AQTG+GKT  F+ P+  
Sbjct: 172 SFTSPPLDPVLLENIGFAMYTTPTPVQKYSIPIVAGGRDLMACAQTGSGKTGGFLFPILS 231

Query: 60  ------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                             GRAR   P  LIL PTREL +Q+ +   K+     +  A++ 
Sbjct: 232 ASFTEGPRPPPETAAPTYGRARKAYPTALILAPTRELVSQIHEEARKFAYRSWVRPAVVY 291

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q +++ERG D+L  TPGR++D   RG++ + N++ LV+DEADRMLDMGF P I
Sbjct: 292 GGADINQQLRQIERGCDLLSATPGRLVDLIERGRISLANVKYLVLDEADRMLDMGFEPQI 351

Query: 168 QNITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I               +FSAT   ++Q ++ +FL++   + V    ST+E I      
Sbjct: 352 RRIVQGEDMPGVNDRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKIEY 411

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
                 +   L     QS++ M   ++F   K+    L   L        +IHG+  QR 
Sbjct: 412 VEDGDKRSVLLDILASQSKEDMGLTLVFVETKRMADMLSDFLIGNNMPATSIHGDRTQRE 471

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L  F+ G   +MVA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G
Sbjct: 472 REMALQTFRTGRTPIMVATAVAARGLDIPNVTHVVNYDLPSDIDDYVHRIGRTGRAGNVG 531

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            +     + +   +  + +L+ +    +   L ++
Sbjct: 532 VSTAFFNRGNKNIVRDLVELLREANQEIPSWLETV 566


>gi|327295054|ref|XP_003232222.1| ATP-dependent RNA helicase DRS1 [Trichophyton rubrum CBS 118892]
 gi|326465394|gb|EGD90847.1| ATP-dependent RNA helicase DRS1 [Trichophyton rubrum CBS 118892]
          Length = 813

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 133/359 (37%), Positives = 192/359 (53%), Gaps = 1/359 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L 
Sbjct: 297 SFQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIVPILE 356

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++
Sbjct: 357 RLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKK 416

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 417 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKSRQT 476

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT  + K+    L  P R+ V++   T  T+   FV        K       L 
Sbjct: 477 MLFSATMTSSVDKLIRLGLNKPVRLMVDSKKQTVGTLVQEFVRLRPGREDKRLGYLMFLC 536

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F  QKK    +       G     +HG++ Q  R+K + +F++  +  ++
Sbjct: 537 KTVYTNRVIVFFRQKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVEDFRDAKVSYLL 596

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K +  
Sbjct: 597 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKE 655


>gi|302854279|ref|XP_002958649.1| hypothetical protein VOLCADRAFT_69703 [Volvox carteri f.
           nagariensis]
 gi|300256038|gb|EFJ40315.1| hypothetical protein VOLCADRAFT_69703 [Volvox carteri f.
           nagariensis]
          Length = 582

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 122/373 (32%), Positives = 201/373 (53%), Gaps = 10/373 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L P ++  +    Y  PTPIQ + +P+ L   D+ G A+TG+GKTASF +PM+ 
Sbjct: 136 SFQEMNLHPNILADIAHHKYETPTPIQAQGLPIALSGRDILGCAETGSGKTASFSIPMIQ 195

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNK 117
               +        P  L+L PTRELA Q+      + ++   N+  ++++GG+P + Q  
Sbjct: 196 HCLNQPPLRPGDGPMALVLAPTRELAQQIEREVRAFSRSSSRNVRTSIVVGGVPMQEQRH 255

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G +V++ TPGR +D   +    ++ +  +V+DEADRMLDMGF P I+ + + +P  
Sbjct: 256 DLRNGVEVVVATPGRFIDLLQQSYTNLSRVSYVVLDEADRMLDMGFEPQIKEVMNNLPPR 315

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC----- 232
            QTLLFSATM  E+++++  +L  P  +++   S+    +                    
Sbjct: 316 HQTLLFSATMPKEIEELARAYLNKPVTVKIGAVSTPTANVAQRLEHAPEGQKLDILVALI 375

Query: 233 -ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
            + +         M   I+F  +K     +  +L++ G    A+HG + Q  R   L +F
Sbjct: 376 SSEVAAEASGGPPMPLTIVFVERKNRCDEVAAALQEDGIPANALHGGLGQFEREAALRDF 435

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
            +G I+++VA+DLA+RGLD+  +GHV N D+P   E+Y+HRIGRTGRAG  G+A +L   
Sbjct: 436 AKGHIKVLVATDLASRGLDVKGIGHVINMDLPKTFEDYVHRIGRTGRAGTKGRATSLWND 495

Query: 352 EDIKHIDAIEKLI 364
            D   +  I++ +
Sbjct: 496 RDSFLVAQIKQAL 508


>gi|134034090|sp|P0C2M6|DED1_EMENI RecName: Full=ATP-dependent RNA helicase ded1
 gi|259482717|tpe|CBF77461.1| TPA: ATP-dependent RNA helicase ded1 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:P0C2M6] [Aspergillus
           nidulans FGSC A4]
          Length = 668

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 135/395 (34%), Positives = 207/395 (52%), Gaps = 20/395 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+  
Sbjct: 187 TFTNPPLDDHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILS 246

Query: 60  ------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                           + GR R   P +LIL PTREL +Q+ D   K+     +   ++ 
Sbjct: 247 QAYQNGPAAPPPSAAGQFGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVY 306

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ L++DEADRMLDMGF P I
Sbjct: 307 GGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQI 366

Query: 168 QNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I      
Sbjct: 367 RRIVEGEDMPNVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEY 426

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
                 +       +L +  T    +IF   K+    L   L  Q F   AIHG+  QR 
Sbjct: 427 VEDHDKRSVL--LDILHTHGTTGLTLIFVETKRMADALSEFLINQRFPATAIHGDRTQRE 484

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G
Sbjct: 485 RERALEMFRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTG 544

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            A     + +   +  +  L+++    +   L S+
Sbjct: 545 IATAFFNRGNRGVVRDLIDLLKEAHQEVPSFLESI 579


>gi|115454875|ref|NP_001051038.1| Os03g0708600 [Oryza sativa Japonica Group]
 gi|75320262|sp|Q53RK8|RH21_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 21
 gi|62733557|gb|AAX95674.1| DEAD/DEAH box helicase, putative [Oryza sativa Japonica Group]
 gi|108710689|gb|ABF98484.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed
           [Oryza sativa Japonica Group]
 gi|108710690|gb|ABF98485.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed
           [Oryza sativa Japonica Group]
 gi|108710691|gb|ABF98486.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed
           [Oryza sativa Japonica Group]
 gi|113549509|dbj|BAF12952.1| Os03g0708600 [Oryza sativa Japonica Group]
 gi|125545447|gb|EAY91586.1| hypothetical protein OsI_13221 [Oryza sativa Indica Group]
 gi|125587655|gb|EAZ28319.1| hypothetical protein OsJ_12293 [Oryza sativa Japonica Group]
 gi|215697317|dbj|BAG91311.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 736

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 133/424 (31%), Positives = 218/424 (51%), Gaps = 32/424 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +++  L  +++ AV  AGY +P+PIQ+ +IPL LQ+ DV GIA+TG+GKTA+FVLPML+
Sbjct: 316 KWSESKLGTELLRAVEKAGYKEPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPMLS 375

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + +            P  +++ PTRELA Q+ +   K+     + V  ++GG   E Q 
Sbjct: 376 YITRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQG 435

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY---------- 166
            K+ +G +V+I TPGR+LD   R   ++N    +V+DEADRM+DMGF P           
Sbjct: 436 FKIRQGCEVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 495

Query: 167 -------IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
                             R T +FSATM   +++++  +L+NP  + + T     +  + 
Sbjct: 496 SNLKPENEDEELDAKTIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGT---AGKATDL 552

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                      +     Q + +    K  I+FCN KK+       L+K GF V  +HG  
Sbjct: 553 ITQNVIMTKESEKMSRLQKILTDLGDKPAIVFCNTKKSADARAKDLDKAGFRVTTLHGGK 612

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q  R   L  F+     ++VA+D+A RG+DIPDV HV N+++P+  + Y HRIGRTGRA
Sbjct: 613 SQEQRETSLDGFRNRRFTVLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGRA 672

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           G+ G A + +  E+      +++++ +         S + P L + + ++       +  
Sbjct: 673 GKKGLATSFLTLENTDIFFDLKQMLIQS-------NSPVPPELARHEASKFKPGSVPDRP 725

Query: 400 PQKS 403
           P+++
Sbjct: 726 PRRN 729


>gi|67528815|ref|XP_662070.1| hypothetical protein AN4466.2 [Aspergillus nidulans FGSC A4]
 gi|40741041|gb|EAA60231.1| hypothetical protein AN4466.2 [Aspergillus nidulans FGSC A4]
          Length = 1526

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 135/395 (34%), Positives = 207/395 (52%), Gaps = 20/395 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+  
Sbjct: 187 TFTNPPLDDHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILS 246

Query: 60  ------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                           + GR R   P +LIL PTREL +Q+ D   K+     +   ++ 
Sbjct: 247 QAYQNGPAAPPPSAAGQFGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVY 306

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ L++DEADRMLDMGF P I
Sbjct: 307 GGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQI 366

Query: 168 QNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I      
Sbjct: 367 RRIVEGEDMPNVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEY 426

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
                 +       +L +  T    +IF   K+    L   L  Q F   AIHG+  QR 
Sbjct: 427 VEDHDKRSVL--LDILHTHGTTGLTLIFVETKRMADALSEFLINQRFPATAIHGDRTQRE 484

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G
Sbjct: 485 RERALEMFRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTG 544

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            A     + +   +  +  L+++    +   L S+
Sbjct: 545 IATAFFNRGNRGVVRDLIDLLKEAHQEVPSFLESI 579


>gi|296807861|ref|XP_002844269.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Arthroderma
           otae CBS 113480]
 gi|238843752|gb|EEQ33414.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Arthroderma
           otae CBS 113480]
          Length = 1183

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 129/437 (29%), Positives = 211/437 (48%), Gaps = 16/437 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL  + +  +   GY  PT IQ + +P ++   DV G+A+TG+GKT +F+LPM  
Sbjct: 551 KWSQCGLGVQTLDVIRKLGYEGPTSIQSQAVPAIMSGRDVIGVAKTGSGKTIAFLLPMFR 610

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R    +  P +LI+ PTRELA Q+      + K  NL      GG P + Q  +L
Sbjct: 611 HIRDQRPLENMEGPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAEL 670

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D     +     +  +  +V+DEADRM DMGF P +  I   +  
Sbjct: 671 KRGAEIIVCTPGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRP 730

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT    ++ ++   L  P  I V   S  A  I                L  
Sbjct: 731 NRQTVLFSATFPRNMEALARKTLSKPVEIIVGGRSVVAPEITQIVEVRNDDAKFVRLLEL 790

Query: 237 ---QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                   ++     ++F ++++    L   L ++G+   +IHG  DQ  R   + +FK 
Sbjct: 791 LGNLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKA 850

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + ++ 
Sbjct: 851 GIFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 910

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            ++   I K +++    +         P++K+  A  +  ++       S GF  +    
Sbjct: 911 ERYSVDISKALKQSGQPVP-------EPIQKMVTAFLDKVKEGKEKASGS-GFGGKGLER 962

Query: 414 SSQKSHIPLKESEKISK 430
             Q+         K  K
Sbjct: 963 LDQERDATRNRERKTYK 979


>gi|209418026|gb|ACI46551.1| RE58551p [Drosophila melanogaster]
          Length = 609

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 124/480 (25%), Positives = 209/480 (43%), Gaps = 38/480 (7%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           D  + P++   +L   +  PTPIQ++ +P++LQR  +   A TG+GKT +F+ P++  L 
Sbjct: 138 DFKMLPRLQQNLLSRNFDHPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIINGLR 197

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNKKLER 121
               +    R L+L PTRELA Q+     +  +   L    +              K   
Sbjct: 198 A--HKTTGLRALVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECKQRY 255

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----ITSLVPFT 177
              V      R L       L ++++E  V+DEADR+++ G   + +       +    T
Sbjct: 256 DILVSTPNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAACSNPT 315

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +    FSAT T  + K +   L+N  RI +   +S  ET++   +   ++  K  A+   
Sbjct: 316 KCVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGKLVAIRDL 375

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + Q        ++F   K+    L   L   G +V  IH    Q  R   +  F+EG+I 
Sbjct: 376 VRQGLQPP--VLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVKAFREGSIW 433

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ ++L  RG+D   V  V N+D P    +YIHRIGRTGRAGR G+A T   +ED  ++
Sbjct: 434 VLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQEDTSNL 493

Query: 358 DAIEKLIE-------------KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
             I  +I+             KKV      + +   PL++ DI+             KST
Sbjct: 494 RGIALIIKNSGGTVPEYMLQMKKVRKSEAKMRA-KEPLDREDISTKIRPETKGDEKHKST 552

Query: 405 GFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
              +             ++ +EKI K ++  +++        GN+   + P  + K N +
Sbjct: 553 KLKK-------------VERTEKILKNRKGYEKDLNSKQKKLGNIKTELKPAGKRKGNVE 599


>gi|317494076|ref|ZP_07952492.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917849|gb|EFV39192.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 459

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 129/385 (33%), Positives = 207/385 (53%), Gaps = 10/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L L    +  + + GY   TP+Q   +P +L+  DV   A+TG+GKTA+F + +L 
Sbjct: 4   SFASLSLPAAQLENLAELGYASMTPVQAAALPAILEGRDVRAQAKTGSGKTAAFGIGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++  +      + L+L PTRELA QV+    +  +       L +  G P   Q   L 
Sbjct: 64  QIDVTQ---FTTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPISHQLDSLV 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRI +H  +  + ++ +++LV+DEADRMLDMGF   I ++ S  P  RQT
Sbjct: 121 HAPHIVVGTPGRIQEHLRKKSVSLDAMKVLVLDEADRMLDMGFADAIDDVISYTPTARQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++         +R  V   +     +       Y     +  LL Q L 
Sbjct: 181 LLFSATYPQGIER----ISARVQREPVTIETGDVSALPDIEQQFYETSRGEKLLLLQALL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN K++  ++  +L  Q  SV A+HG+++QR R ++L  F   + +++V
Sbjct: 237 SNLQPASCVVFCNTKRDCQDVYDALSGQDISVLALHGDLEQRERDQVLVRFSNRSCRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V N+++    E ++HRIGRT RAG+ G A + VA  ++    A+
Sbjct: 297 ATDVAARGLDIKELEMVVNYELSFDPEVHVHRIGRTARAGQKGLAVSFVAPSEMVRAHAL 356

Query: 361 EKLIEKKVDWLNGD--LSSLNPPLE 383
           E  I  K +WL+ D  ++S   PLE
Sbjct: 357 EDYIGLKPNWLSADKMMASPMKPLE 381


>gi|227514534|ref|ZP_03944583.1| ATP-dependent RNA helicase [Lactobacillus fermentum ATCC 14931]
 gi|227087091|gb|EEI22403.1| ATP-dependent RNA helicase [Lactobacillus fermentum ATCC 14931]
          Length = 460

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 122/452 (26%), Positives = 208/452 (46%), Gaps = 22/452 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L+  +  A+ D  + +PT +Q + IPL+L    V G ++TG+GKT +F+LP+ +
Sbjct: 4   SFADLHLADFLTPALKDLHFERPTAVQARVIPLILNGKSVVGQSRTGSGKTHAFLLPIFS 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L      V+   T             A    ++          + G        +   R
Sbjct: 64  QLAPNNQTVQAVITTPSRELAYQIYNAAKQLNRFATTPLTIHNYVGGTDKEHQVEQLNRR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD  N   L ++     VIDEAD  LDMGF+  +  I +  P   Q +
Sbjct: 124 QPQLVIGTPGRILDLINSQALDIHTASQFVIDEADMTLDMGFLETVDQIAARFPEKLQMM 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+   L+   + +L+NP   E+ T +     +E+  ++T  +             +
Sbjct: 184 VFSATIPQGLRPFLKKYLENPVIEEIPTETVINPNVENWLMSTKGRDKNDLVYRLL---T 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F N +     L + L+++G  V  IHG ++ R+R + +   ++   Q +VA
Sbjct: 241 LGDPYLALVFANTRDRATELANYLQERGLKVALIHGGLEPRARKRTMRQIRDMDYQYIVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+D+  V  V N D+P+  E ++HR+GRTGRA   G A TL A  +      IE
Sbjct: 301 TDLAARGIDLEGVSLVLNDDIPSDLEYFVHRVGRTGRANMAGTAITLYAPAEDVL---IE 357

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI-------------PQKSTGFDR 408
           KL E+ + ++  DL +    +   D  +    R+                  +   G+ R
Sbjct: 358 KLEERGITFIPKDLKNGRI-VTTYDRNRRKAHRRKKAALDPTVKGFVKKAKKKVKPGYKR 416

Query: 409 RKKNYSSQKSHIPLKESEK--ISKLQQDIQEN 438
           R K    +     +K++++  + K ++  Q+ 
Sbjct: 417 RIKQRIKEDERQKVKQAQRHEMRKAKRARQKQ 448


>gi|170593039|ref|XP_001901272.1| DEAD [Brugia malayi]
 gi|158591339|gb|EDP29952.1| DEAD, putative [Brugia malayi]
          Length = 689

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 139/397 (35%), Positives = 201/397 (50%), Gaps = 18/397 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++   P V+ A+ D   + PT IQ++ IP+ L   D+ GIA TG+GKT +F LP++ 
Sbjct: 248 SFIEMKFPPPVIKALRDKKIICPTVIQMQGIPVALSGRDMIGIASTGSGKTLTFALPLIM 307

Query: 62  ILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-------TVALLIGG 109
              +            P  LI+ P+RELA Q+ D  EK  +N           V L IGG
Sbjct: 308 FCLEQEVSLPFRHGEGPYGLIIVPSRELAKQIHDVIEKLFENICDGTKFPRLRVGLCIGG 367

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +P   Q +  ERG  V + TPGR+ D  ++    +     LV+DEADRMLDMGF   I+ 
Sbjct: 368 LPISEQARVFERGVHVCVATPGRLSDLLSKKIFNLQVCRYLVLDEADRMLDMGFEEEIRT 427

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I S     RQTLLFSATM  ++Q     F ++     V      A       +       
Sbjct: 428 IFSFFKGQRQTLLFSATMPRKIQN----FARSALVRAVIVNVGRAGAASLNVIQEIEYVR 483

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
               L + L   Q T    +IF  +K +V N+   L  +G  V ++HG  DQ+ R   + 
Sbjct: 484 ADEKLTRILDCLQKTAPRVLIFAEKKSDVDNIYEYLLVKGVDVASLHGGKDQKDRHTGVD 543

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+ G   ++VA+D+A++GLD  ++ HV NFD+P   ENY+HRIGRTGR+GR G A T +
Sbjct: 544 AFRRGEKDVLVATDVASKGLDFENIQHVINFDMPEDIENYVHRIGRTGRSGRKGMATTFI 603

Query: 350 AKE-DIKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEK 384
            +  DI  +  +  L+ +    L   L  +  P LE+
Sbjct: 604 NRRADISVLQDLRALLLEAGQELPLFLRDMGGPELEQ 640


>gi|85014443|ref|XP_955717.1| ATP-dependent RNA helicase [Encephalitozoon cuniculi GB-M1]
 gi|74654409|sp|Q8SQK9|DHH1_ENCCU RecName: Full=ATP-dependent RNA helicase DHH1
 gi|19171411|emb|CAD27136.1| putative ATP-DEPENDENT RNA HELICASE (DEAD box family)
           [Encephalitozoon cuniculi GB-M1]
          Length = 489

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 189/372 (50%), Gaps = 7/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +  LGL P ++  + D GY  P+P+Q+ +IP VL   ++   ++ GTGKTAS+++PML +
Sbjct: 110 WESLGLGPVLLKRIRDIGYDFPSPVQVASIPHVLGGKNLLVRSKNGTGKTASYIVPMLNM 169

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +      ++     IL P RELA Q++ N ++  +   +  A ++GG   +    ++  G
Sbjct: 170 INSSELSIQGI---ILVPIRELALQISRNVKRMSEGTGVISAPVVGGTSMQDDIIRVSNG 226

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGRI+D   +    ++   ILV DEAD++LD+ F   +  +  L+P  +Q LL
Sbjct: 227 VHVMVGTPGRIVDLVEKRVGTLSKRVILVFDEADKLLDVTFGETVTKLLDLLPREKQMLL 286

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           +SAT    +      F++   +  +                       +  L  + L  +
Sbjct: 287 YSATFPYFVTG----FIRRYMKNPLCINLMKELAPVGVKQFYTYVKPSEKLLCLKSLLLR 342

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            ++   +IFCN  K V  L   + + G     IH  + Q  R  +  NF +G  +++VA+
Sbjct: 343 LSINQCVIFCNSIKTVELLAMKITEMGLPSYFIHSKMAQEDRNIVFHNFLKGKCKILVAT 402

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DL  RG+D P+  +V NFD+    E+Y+HRIGR GR G  G A +LV  E+ + +  IE 
Sbjct: 403 DLITRGVDAPNTNYVINFDISKSPESYLHRIGRAGRFGAPGVAISLVTTEEKEMLMDIEA 462

Query: 363 LIEKKVDWLNGD 374
            + K++  L+  
Sbjct: 463 KLGKEISPLSDK 474


>gi|297709568|ref|XP_002831500.1| PREDICTED: probable ATP-dependent RNA helicase DDX53-like [Pongo
           abelii]
          Length = 629

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 125/397 (31%), Positives = 206/397 (51%), Gaps = 5/397 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI---LEKG 66
           P ++ ++   G VKPTPIQ +  P++LQ  D+  +AQTGTGKT S+++P           
Sbjct: 231 PDLLKSITRVGIVKPTPIQSQAWPIILQGIDLIEVAQTGTGKTLSYLMPGFIHLDSQPIS 290

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTRELA QV     KY      ++ +  G      Q + + +G D++
Sbjct: 291 REQRNGPGMLVLTPTRELALQVEAQCSKYSYKGLKSICIYGGRNRIG-QIEDISKGVDII 349

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + +I  LVIDEAD+MLDM F P I  I   V   RQT++ SAT
Sbjct: 350 IATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIMKILLDVRPDRQTVMTSAT 409

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             D +++++ ++L++P  + V   +  A       +    +  K+    Q+ +++     
Sbjct: 410 WPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALT-QEFVENMSPND 468

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+F +QK    +L      QG SV ++HGN +   + + L +FK G I++++ +D   
Sbjct: 469 KVIMFVSQKHTADDLSSDFNIQGISVESLHGNTEHSDQERALEDFKSGNIKILITTDFVP 528

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLD+ DV HV+N+D P   E Y+HR+G  GRAG+ G + TL+ + D K    + K++++
Sbjct: 529 RGLDLNDVTHVYNYDFPRNIEVYVHRVGYIGRAGKTGTSVTLITQRDSKMAGELIKILDR 588

Query: 367 KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
               +  DL  +    +     +    R   P  ++ 
Sbjct: 589 ANQSVPEDLVVIAEQYKLNQQKRDTETRSRKPGQRRK 625


>gi|297794203|ref|XP_002864986.1| hypothetical protein ARALYDRAFT_496826 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297310821|gb|EFH41245.1| hypothetical protein ARALYDRAFT_496826 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 591

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 223/468 (47%), Gaps = 19/468 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L LS     +V + G+ + T IQ K IP ++   DV G A+TG+GKT +F++P   
Sbjct: 114 TFESLSLSDNTYKSVKEMGFARMTQIQAKAIPPLMMGKDVLGAARTGSGKTLAFLIPAAE 173

Query: 62  ILEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R   R    +I + PTRELA Q     ++  K ++ TV  +IGG   + + + L 
Sbjct: 174 LLYHVRFTPRNGTGVIVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGENRKKEAEILA 233

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G ++L+ TPGR +    N    +  N+++ V+DEADR+L+  F   ++ I  L+P TRQ
Sbjct: 234 KGVNLLVATPGRLLDHLENTNGFVFKNLKLFVMDEADRILEQNFEEDLKKIIKLLPKTRQ 293

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT + +++ ++   L +P  I+V+                      +   L   L
Sbjct: 294 TSLFSATQSAKVEDLARVSLASPVYIDVDEGRQKVTNEGLEQGYCVVPSGMRLLFLLTFL 353

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +     K  ++F +  K+                 I G IDQ  R   L  FK+    ++
Sbjct: 354 KRFHGKKKIMVFFSTCKSTKFHAELFRYIKLDCLEIRGGIDQSKRTSTLFQFKKAETGIL 413

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHID 358
           + +++AARGLD P V  +  +D P+    YIHR+GRT R  G  GKA  ++  ++++ I 
Sbjct: 414 LCTNVAARGLDFPHVDWIVQYDPPDNPTEYIHRVGRTARGEGAKGKALLVLTPDELQFIQ 473

Query: 359 AIE--KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            ++  K+  ++ ++  G L  +   LE  D+   N+A K +             K Y S 
Sbjct: 474 YLKAAKIPVEEHEFEEGKLLDVKSFLE--DLISKNYALKESA--------KEAYKTYISG 523

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
                +K+   + +L  D++E  A S GF  + P   L  +RG    K
Sbjct: 524 YDSHSMKDVFNVHRL--DLKEV-AASFGF-SDPPKVALKTDRGGYKSK 567


>gi|326435254|gb|EGD80824.1| hypothetical protein PTSG_11725 [Salpingoeca sp. ATCC 50818]
          Length = 818

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 127/364 (34%), Positives = 209/364 (57%), Gaps = 2/364 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++D GY  PTPIQ KTIPL++   DV G+A+TG+GKTA+FV+PML  
Sbjct: 38  FQSMGLSRGVFRGIMDKGYKVPTPIQRKTIPLIIGGQDVVGMARTGSGKTAAFVIPMLEK 97

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+V   R L++ PTRELA Q     ++ G+  +L VAL++GG   + Q   +   
Sbjct: 98  LKSHSAKVG-IRALVMSPTRELAEQTFKFIKELGRRTDLRVALILGGDNMDDQFGWMHAN 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR L      +L +  +E +V DEAD++ + GF  +++ I   +P  RQTLL
Sbjct: 157 PDVIVATPGRFLHLLVEMELSLKAVEYVVFDEADQLFEKGFEEHLKEILMRLPEDRQTLL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +L + +   L+ P  + ++  +  +E +   +     +  K   L+  L    
Sbjct: 217 FSATLPKKLIEFARAGLKQPTLVRLDADTKLSEQLRTQY-VHCRRADKPAGLIYLLTNVI 275

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  ++F + K  +  L   LE         +GN+D  +R   ++ F+ G ++L++ +
Sbjct: 276 PRGKLTVVFVSTKHLIEYLKVLLEALQIPCTYSYGNLDPTARKINIAKFRAGKVKLLLVT 335

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP + +V N+D P R + ++HR+GR  RAGR G A++LVA +++ H+  +  
Sbjct: 336 DVAARGIDIPMLDYVVNYDFPRRPKLFVHRVGRVARAGRSGTAYSLVAVDEVAHLIDLHT 395

Query: 363 LIEK 366
            + +
Sbjct: 396 FLGR 399


>gi|270358682|gb|ACZ81471.1| CNB00610 [Cryptococcus heveanensis]
          Length = 974

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 148/535 (27%), Positives = 250/535 (46%), Gaps = 76/535 (14%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ--RHDVCGIAQTGTGKTASFVLPM 59
            +  L +S  ++ ++L   +  PTPIQ  +IP  L     D+ G+A+TG+GKT ++++P+
Sbjct: 30  QWQALNISDDLIKSLLQRKFKSPTPIQRSSIPGALSTPPRDILGMARTGSGKTLAYLIPL 89

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL------------------ 101
           L  +    + V  PR LIL P+RELA Q+    +   +                      
Sbjct: 90  LQRIGSSHSDVACPRALILCPSRELAVQIYSVGKDLARGTIRGKGKGKEKTSDRDGKVES 149

Query: 102 -TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160
              AL+IGG   + Q  K+ R  DV+I TPGR L      +L + +++++V DEADR+ +
Sbjct: 150 LRWALIIGGEGLDTQFDKMSRNPDVVIATPGRFLHLAVEMRLDLRHLQVVVYDEADRLFE 209

Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
           MGF   ++ I S +P TRQ LLFSAT+   + + ++  L NP  I +++    +  ++  
Sbjct: 210 MGFDVQLREILSRLPPTRQNLLFSATLPSSVAEFAKAGLVNPLLIRLDSEHKISPDLDLR 269

Query: 221 FVATYAQYS--------KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
           F +              K    +             I+F + K +V  +   L+  GF  
Sbjct: 270 FFSVKPIEKDAALLVLLKDVIKVPLSSGDNSHSPQAIVFVSTKHHVDYINELLKTAGFRS 329

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
             I+ ++DQ +R + L +F+     ++V +D+AARGLDIP + HV N+D P+    ++HR
Sbjct: 330 SHIYSSLDQVARHQQLHHFRNRLTDVLVVTDVAARGLDIPVMDHVVNYDFPSGPRVFVHR 389

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE--------------------KKVDWLN 372
           +GRT RAGR G A++LV ++D  ++  ++  +                     + ++++ 
Sbjct: 390 VGRTARAGRKGNAWSLVTRDDWPYLFDLQTFLGLDRMGSNGDMLRNIPDDNISQMIEYIT 449

Query: 373 GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF----DRRK-----KNYSSQKSHIPLK 423
             L    P LE     Q N  RK   + ++S G       RK     K   S ++HIP+ 
Sbjct: 450 TSLDEQAPNLE----MQRNVMRKGQAMFERSRGKADPASYRKAKLFGKELDSGQAHIPVD 505

Query: 424 -------ESEKISKLQQDIQENDADS-------LGFRGNMPAFMLPKNRGKLNDK 464
                  ES  +S   + +    A +       +G RG+     L KNR K+  +
Sbjct: 506 IGLQERGESSLVSGRSRLLSSVAAYTPAETIFEVGKRGDASTATLMKNRRKVASR 560


>gi|170589285|ref|XP_001899404.1| KIAA0801 protein [Brugia malayi]
 gi|158593617|gb|EDP32212.1| KIAA0801 protein, putative [Brugia malayi]
          Length = 964

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 129/383 (33%), Positives = 198/383 (51%), Gaps = 8/383 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  G+  K++  +    Y KPTPIQ + IP ++   DV GIA+TG+GKT +F+LPM  
Sbjct: 305 SWAQCGVEWKILSTLKKLEYKKPTPIQCQAIPAIISGRDVIGIAKTGSGKTLAFLLPMFR 364

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +     +  P  +I+ PTRELA Q      K+ K  N+ VA + GG+    Q   L
Sbjct: 365 HILDQPELEEMDGPIAVIMSPTRELAMQTWKEANKFAKQLNVRVACVYGGVGISDQIGDL 424

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA+V++CT GR+ D           +  +  LV+DEADRM DMGF P +  I + +  
Sbjct: 425 KRGAEVVVCTVGRLTDMLAANKGKVTNLRRVTYLVLDEADRMFDMGFEPQVMKIVNNIRP 484

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT   +++ ++   L  P  I V   S   + +    V            L 
Sbjct: 485 DRQTVLFSATFPRQMEALARKILDKPIEIMVGGKSVVCDDVNQNVVILEEHQK--MLKLL 542

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       N ++F ++++   +L   L + G++   +HG IDQ  R   + ++K G I
Sbjct: 543 ELLGVYWENGNVLVFVDKQEKADDLVAQLMRSGYNCAPLHGGIDQFDRDSTILDYKAGKI 602

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIK 355
           +L+VA+ +AARGLDI  +  V N+D PN  E+Y+HR+GRTGRAG  G A+T +      +
Sbjct: 603 KLLVATSVAARGLDIKKLILVVNYDCPNHYEDYVHRVGRTGRAGNKGYAYTFILPTGQER 662

Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378
               + +  E         L  +
Sbjct: 663 MAGEVCRAFETAGKEPPEQLKKM 685


>gi|86133373|ref|ZP_01051955.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
 gi|85820236|gb|EAQ41383.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
          Length = 606

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 135/384 (35%), Positives = 218/384 (56%), Gaps = 10/384 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F ++GL   ++ A+ D GY KPT IQ K IP ++    D+   AQTGTGKTA+F LP+L
Sbjct: 3   TFKEIGLKAPIIKALTDLGYEKPTVIQEKAIPQIISSDTDLKAFAQTGTGKTAAFSLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
            +LE+    V+     IL PTRELA Q+ +N + + K         + G    E Q + L
Sbjct: 63  ELLEEDNNNVQAI---ILSPTRELAVQIGNNIKDFCKYLKNVKVTTVYGGSSMEDQIRSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G+ +++ TPGR +D  NR  L + N+  LV+DEAD ML+MGF   +  +    P T+Q
Sbjct: 120 KKGSQIVVGTPGRTVDLINRRALKLGNVRWLVLDEADEMLNMGFKEELDKVLEATPETKQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   E++ ++ N++  P  +     +S +E + H     YA   +      + +
Sbjct: 180 TLLFSATFPREVEAIARNYMTTPVEVTSGEKNSGSENVSH---EYYAVTERTRYPALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIFC  ++    +  +L K G++  ++HG++ Q  R  ++  F++ TIQ++
Sbjct: 237 ADLNPDIYAIIFCRTRRETQEVADNLIKDGYNADSLHGDLSQAQRDSVMGKFRKKTIQIL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ ++ HV N  +P++ ENY HR GRTGRAG  G +  LV   +   +  
Sbjct: 297 VATDVAARGLDVTELTHVINHKLPDQIENYTHRSGRTGRAGNKGVSIVLVNNREKGKLRV 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE 383
           IE++I++K  ++ G + +    +E
Sbjct: 357 IERIIKQK--FVEGKVPTGKEIVE 378


>gi|329897169|ref|ZP_08271909.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium IMCC3088]
 gi|328921324|gb|EGG28718.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium IMCC3088]
          Length = 397

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 116/373 (31%), Positives = 194/373 (52%), Gaps = 6/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L  +++  + D G+V  +PIQ   +P  L+  D  G AQTGTGKTA+F++ +  
Sbjct: 16  TFESLDLDERLLKGIKDLGFVTCSPIQGAILPHTLRGLDAIGKAQTGTGKTAAFLITVFN 75

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                       V  PR L++ PTREL  Q+A++ +  GK   L V  LIGG+ ++ Q +
Sbjct: 76  DLLAHPIDDERFVGEPRALVIAPTRELVMQIAEDAKDLGKYTGLRVVTLIGGMDYQKQLQ 135

Query: 118 K-LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K  +   D+++ TPGR++D   R  L ++ +E +V+DEADRMLDMGFIP ++ I    P 
Sbjct: 136 KLDQEPVDLVVATPGRLIDFMTRQDLFLDRVETIVLDEADRMLDMGFIPQVKRIVRATPP 195

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
                    + T   Q +     Q   +         +    +     Y   +++   + 
Sbjct: 196 KEHRQTLLFSAT-FTQDIINLSEQWTYKPIKIEIEPESVATANVDQKVYLVSAEQRYKIL 254

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L   +   + I+F N++  V +L   L K       + G I Q  R + L +FK G +
Sbjct: 255 LNLLRDEAATSVIVFANRRDQVRHLYERLRKASIPCGVLSGEIPQNKRTRTLEDFKRGKL 314

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+A RG+ +  V HV N+++P   ++Y+HRIGRTGRAG  G + +  +++D   
Sbjct: 315 KVLVATDVAGRGIHVDGVSHVVNYNLPEDPDDYVHRIGRTGRAGATGTSISFASEDDAFL 374

Query: 357 IDAIEKLIEKKVD 369
           +  IE L+ ++++
Sbjct: 375 LPDIEALLGERLE 387


>gi|320163598|gb|EFW40497.1| ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 1198

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 122/366 (33%), Positives = 194/366 (53%), Gaps = 1/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  +  A+   GY  PTPIQ KT+PL+L+  DV  +A+TG+GKTA+F++P+L  
Sbjct: 259 FQSLGLSYNIFRAIGKKGYKVPTPIQRKTMPLLLEGKDVVAMARTGSGKTAAFLVPLLEK 318

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+         R LIL PTRELA Q            NL   L++GG   E Q   +   
Sbjct: 319 LQSHVPGTGC-RALILSPTRELAMQTHKFCNDLSSFTNLRTRLIVGGESLEQQFAAMHEN 377

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +  ++ +V DEADR+ +MGF   +  + + +P  RQT L
Sbjct: 378 PDIVIATPGRFLHVVMEMNLRLQAVQYVVFDEADRLFEMGFAEQLSELLARLPEGRQTCL 437

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L   +   LQ+P  + ++  +  +E +                +        
Sbjct: 438 FSATLPRMLVDFARAGLQDPVLVRLDVDTKISENLSLAHFIVRKDEKIGALIHVLTNLIN 497

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T +  I+F   + +V  +   L   G SV +I+G++DQ +R   L+ F+     +MV +
Sbjct: 498 TTTEQSIVFVATRHHVEFISLILTSFGLSVASIYGSMDQAARKINLAKFRLNKASVMVVT 557

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP + +V N+D P + + +IHR+GR  RAGR G A++LV  +++ ++  +  
Sbjct: 558 DVAARGIDIPLLNNVINYDFPAKPKLFIHRVGRAARAGRTGVAYSLVQPDELPYVLDLHL 617

Query: 363 LIEKKV 368
            + + +
Sbjct: 618 FLGRPL 623


>gi|240274680|gb|EER38196.1| ATP-dependent RNA helicase drs1 [Ajellomyces capsulatus H143]
          Length = 828

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 149/449 (33%), Positives = 221/449 (49%), Gaps = 25/449 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L 
Sbjct: 305 SFQAFSLSRPILRGLTFVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILE 364

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R +IL PTRELA Q  +   K     ++T   L+GG     Q   L++
Sbjct: 365 RLLYRPRKVPTSRVVILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKK 424

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 425 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 484

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+ + K+    L  P R+ V+    T  T+   FV       +K      +L 
Sbjct: 485 MLFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLIQEFVRLRPGREEKRLGYLIVLC 544

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   KK    +       G  V  +HG++ Q  R+K +  F++G +  ++
Sbjct: 545 KNIYKDRVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRIKSVEGFRDGKVSFLL 604

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA- 359
           A+D+A+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A TL A+ D K + A 
Sbjct: 605 ATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKAA 664

Query: 360 -----------IEKLIE---------KKVDWLNGDLSSLNPPLEKIDIAQ--HNHARKNN 397
                      + +LIE         K  +        L    E+  +AQ      R +N
Sbjct: 665 VKTGRAQGAKIVSRLIETAEADKWAAKVEEMQEEVQEILREEKEEKQLAQAEMEVTRGSN 724

Query: 398 PIPQKSTGFDRRKKN-YSSQKSHIPLKES 425
            +        R K+  + S+K  +  K+ 
Sbjct: 725 LLNHDKEIMSRPKRTWFESEKEKLQAKQR 753


>gi|226289876|gb|EEH45360.1| ATP-dependent RNA helicase HAS1 [Paracoccidioides brasiliensis
           Pb18]
          Length = 607

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 121/408 (29%), Positives = 203/408 (49%), Gaps = 7/408 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L LS K + A+ D  +   T IQ + IP +L   DV G A+TG+GKT +F++P + 
Sbjct: 129 KFSELNLSEKTMKAIEDMKFETMTEIQRRGIPPLLAGRDVLGAAKTGSGKTLAFLIPAVE 188

Query: 62  ILEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + R    +I+  PTRELA Q+     +   +++ T  ++IGG    A+ +KL 
Sbjct: 189 MLSALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAEKLA 248

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-VPFTR 178
           +G ++LI TPGR +    N    +  N++ LVIDEADR+L++GF   ++ I  +     R
Sbjct: 249 KGVNLLIATPGRLLDHLQNTQGFIFRNLKALVIDEADRILEVGFEDEMRQIVKILPSEDR 308

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT T +++ ++   L+               T+E          S K  LL   
Sbjct: 309 QTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEYSTVEGLEQGYVICDSDKRFLLLFS 368

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +    V      L      V  +HG   Q+ R      F       
Sbjct: 369 FLKRNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGT 428

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R A   G++   +   ++  +
Sbjct: 429 LICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGANGKGRSLMFLQPSEVGFL 488

Query: 358 DAIE--KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
             ++  ++   + D+ +  + ++   LEK+ I Q+ +  K+     +S
Sbjct: 489 KHLKEARVPVVEFDFPSKKIVNVQSQLEKL-IGQNYYLNKSAKDGYRS 535


>gi|242007312|ref|XP_002424485.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212507903|gb|EEB11747.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 669

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 143/445 (32%), Positives = 223/445 (50%), Gaps = 13/445 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-L 60
            F  + LS  ++ A+    +  PTPIQ   IP+ L   D+CG A TGTGKTA+++LP+  
Sbjct: 156 SFYQMNLSRPLMKAIAAMNFSHPTPIQCAAIPVALLGRDICGCAATGTGKTAAYMLPILE 215

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L K +  + + R L+L PTREL  QV    ++  K   + + L +GG+  + Q   L 
Sbjct: 216 RLLYKPQGSLSITRVLVLVPTRELGVQVIQVAKQLSKFTTIEIGLAVGGLDVKVQEAFLR 275

Query: 121 RGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  D++I TPGR++DH  N     +++IEILV+DEADRMLD  F   ++ I      TRQ
Sbjct: 276 KQPDIVIATPGRLIDHLKNSLGFSLDSIEILVLDEADRMLDEYFAEQMKEIVRQCSRTRQ 335

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMT  ++ ++   L NP +I V++  S    +   F+            +   L
Sbjct: 336 TMLFSATMTTAVEDLASVSLSNPVKIFVDSNQSVTNNLRQEFIRIRKGREGDKEAVLAAL 395

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    N IIF   K     L   L         +HGN+ Q  R+  L  FK G + ++
Sbjct: 396 VRRTFRANCIIFVATKSQAHKLRILLGFLNMKAGELHGNLRQPERLDTLKRFKNGELDIL 455

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  V  V N+D+P   E+YIHR+GRT RAGR G + +L  + + K +  
Sbjct: 456 VATDVAARGLDISGVKTVINYDLPMTFEHYIHRVGRTARAGRSGISVSLACESERKLVKE 515

Query: 360 IEKLIEKKVD----------WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           I K  E+ V                +  L   ++K+ + +    R       +    +++
Sbjct: 516 IVKKAERPVKSRIIPPQILLKYKKKVEELGEDVDKV-LKEELEERLLQKAEMQMNAMEKK 574

Query: 410 KKNYSSQKSHIPLKESEKISKLQQD 434
            K+  +   +   +E  +  K + D
Sbjct: 575 LKSNDNNNDYDKTREWFQTKKQRSD 599


>gi|324507937|gb|ADY43357.1| ATP-dependent RNA helicase DDX17 [Ascaris suum]
          Length = 625

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 136/410 (33%), Positives = 212/410 (51%), Gaps = 4/410 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
           +F + G  P+V+  +L + + +PT IQ  + P+     D+  IA+TG+GKT +F+LP  +
Sbjct: 193 EFNESGF-PEVLVNMLYSSFERPTIIQSISWPIASSGRDIVSIAKTGSGKTLAFILPGII 251

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            T  +  R R   P  L+L PTRELA QV +   +Y K   L+V  L GG    +Q + L
Sbjct: 252 HTTKQPPRGRGEGPSVLVLLPTRELAQQVQEVSREYCKAMGLSVTCLFGGAARGSQARDL 311

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG DV I TPGR+LD    G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 312 ERGVDVAIATPGRLLDFLESGTTNLRRCSYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 371

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK-CALLQQL 238
           TL+FSAT   E++ ++ +F  +   + V +    A       V    +Y K+   +    
Sbjct: 372 TLMFSATWPKEVRALASDFQSDHAFLNVGSLELAANHNITQVVEVVEEYQKQGRMMTLLT 431

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     ++F   K+   +L  S+ + G+    IHG+ +Q  R  +LS FK G   +
Sbjct: 432 DIMNQPECKTLVFVETKRKADDLTRSMRRDGWPTLCIHGDKNQGERDWVLSEFKSGKTPI 491

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLD+ D+  V N+D PN +E+Y+HRIGRT R  + G A+T     +     
Sbjct: 492 LLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTARCEKKGTAYTFFTPSNAPKAR 551

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
            + K++E+    +  +L  L          +  ++ K +   +   G  +
Sbjct: 552 DLIKVMEEANQVVPPELVELADRSSGRSTGRSRYSGKRSYDERGGGGASK 601


>gi|324507413|gb|ADY43143.1| ATP-dependent RNA helicase DDX17 [Ascaris suum]
          Length = 492

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 136/410 (33%), Positives = 212/410 (51%), Gaps = 4/410 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
           +F + G  P+V+  +L + + +PT IQ  + P+     D+  IA+TG+GKT +F+LP  +
Sbjct: 60  EFNESGF-PEVLVNMLYSSFERPTIIQSISWPIASSGRDIVSIAKTGSGKTLAFILPGII 118

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            T  +  R R   P  L+L PTRELA QV +   +Y K   L+V  L GG    +Q + L
Sbjct: 119 HTTKQPPRGRGEGPSVLVLLPTRELAQQVQEVSREYCKAMGLSVTCLFGGAARGSQARDL 178

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG DV I TPGR+LD    G   +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 179 ERGVDVAIATPGRLLDFLESGTTNLRRCSYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 238

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK-CALLQQL 238
           TL+FSAT   E++ ++ +F  +   + V +    A       V    +Y K+   +    
Sbjct: 239 TLMFSATWPKEVRALASDFQSDHAFLNVGSLELAANHNITQVVEVVEEYQKQGRMMTLLT 298

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     ++F   K+   +L  S+ + G+    IHG+ +Q  R  +LS FK G   +
Sbjct: 299 DIMNQPECKTLVFVETKRKADDLTRSMRRDGWPTLCIHGDKNQGERDWVLSEFKSGKTPI 358

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLD+ D+  V N+D PN +E+Y+HRIGRT R  + G A+T     +     
Sbjct: 359 LLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTARCEKKGTAYTFFTPSNAPKAR 418

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
            + K++E+    +  +L  L          +  ++ K +   +   G  +
Sbjct: 419 DLIKVMEEANQVVPPELVELADRSSGRSTGRSRYSGKRSYDERGGGGASK 468


>gi|323497181|ref|ZP_08102201.1| ATP-dependent RNA helicase DbpA [Vibrio sinaloensis DSM 21326]
 gi|323317756|gb|EGA70747.1| ATP-dependent RNA helicase DbpA [Vibrio sinaloensis DSM 21326]
          Length = 458

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 141/364 (38%), Positives = 216/364 (59%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L P+++  V   GY + TPIQ + +PLVL   DV G  +TG+GKTA+F L +L+
Sbjct: 4   SFKTLSLRPELLETVASLGYSEMTPIQQQALPLVLAGKDVIGQGKTGSGKTATFSLGVLS 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+   +L+L PTRELA QVA       +  +    L +  G+P   Q   LE
Sbjct: 64  NLNVKRFRVQ---SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH ++G++ ++ +  LV+DEADRMLDMGF   I  I S  P  RQ+
Sbjct: 121 HGAHILVGTPGRILDHLSKGRINLDELNTLVLDEADRMLDMGFEDAIDAIISAAPTQRQS 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    ++ ++E  +  P+ ++V +   T ET          + S++     + L 
Sbjct: 181 LLFSATFPANIKTLAEKVMSEPEMVKVES---THETTTIEQRFYALEGSEEKDNALETLL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++FCN KK V N+   L  +GFSV  +HG+++QR R + L+ F   ++ ++V
Sbjct: 238 LVHKPESSVVFCNTKKEVQNVTDELNHRGFSVVELHGDMEQREREQALTMFANKSVSILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+  ++++   ++ I
Sbjct: 298 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGIAFSFYSEKEHYRVERI 357

Query: 361 EKLI 364
           E  +
Sbjct: 358 EDYM 361


>gi|156550340|ref|XP_001606535.1| PREDICTED: similar to ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 425

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 89/375 (23%), Positives = 168/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 45  FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 104

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE     V +             ++  + F KY +N  ++V      I  + +  K    
Sbjct: 105 LESTENHVYVLVMCHTRELAFQISKEYERFSKYMQNVKVSVFFGGLPIQKDEEVLKNTCP 164

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L +    ++ +    +  +     +Q I    P  +Q ++
Sbjct: 165 HIVVGTPGRILALIKSKKLNLKHLKHFVLDECDKMLEQLDMRKDVQEIFRSTPHGKQVMM 224

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  + V+  +               +  K   L +      
Sbjct: 225 FSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYIKLKENEKNKKLFEL--LDV 282

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F    IH  + Q  R+    +FK+   +++VA+
Sbjct: 283 LEFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMTQEERLTKYQSFKDFQKRILVAT 342

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T ++ E D K ++ ++
Sbjct: 343 NLFGRGMDIERVNIVFNYDMPENSDTYLHRVARAGRFGTKGLAITFISDESDAKILNDVQ 402

Query: 362 KLIEKKVDWLNGDLS 376
           +  +  +  L  ++ 
Sbjct: 403 ERFDVNITELPDEID 417


>gi|328766962|gb|EGF77014.1| hypothetical protein BATDEDRAFT_645 [Batrachochytrium dendrobatidis
           JAM81]
          Length = 589

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 135/457 (29%), Positives = 232/457 (50%), Gaps = 19/457 (4%)

Query: 2   DFADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            +   G+ P V+  +     Y +P+ IQ + IP ++   DV GIA+TG+GKT +F+LPM 
Sbjct: 61  KWTHFGMPPGVLEVIRRVLKYDRPSSIQSQAIPAIVGGRDVIGIAKTGSGKTIAFLLPMF 120

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             ++  R    M  ++  I+ PTRELA Q+    + + K  NL      GG P + Q  +
Sbjct: 121 RHIKDQRPIQAMEGSIALIMTPTRELAVQIHRECKHFTKILNLRAVCCYGGSPIKDQIAE 180

Query: 119 LERGADVLICTPGRILDHFNRG---KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           L+RGA+++ICTPGR++D           +  +  LV+DEADRM DMGF P +  + + + 
Sbjct: 181 LKRGAEIIICTPGRMIDLLCSNAGRVTNLRRVTYLVLDEADRMFDMGFEPQVMKMVNNIR 240

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-- 233
             RQT+LFSAT   +++ ++   L+ P  I V   S  A  +       +   +K     
Sbjct: 241 PDRQTVLFSATFPRKMEALARKILRRPLEITVGGRSVVASDVTQIVEVHHDDETKFLRLL 300

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            +  L  + D     +IF ++++   ++ + L ++G+   ++HG  DQ  R   LS+FK 
Sbjct: 301 EILGLSSATDPDAKILIFVDRQEAADSMLNKLLRRGYPCQSLHGGKDQADRDSTLSDFKT 360

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G+  +M+A+ +AARGLD+  +  V N++ PN  E+Y+HR+GRTGRAG  G A+T +  E 
Sbjct: 361 GSTNIMIATSVAARGLDVKQLKIVVNYECPNHMEDYVHRVGRTGRAGNKGTAYTFILPEQ 420

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPP-LEKIDIAQHNHARKNNPIPQKSTGFDRRK-K 411
            +    I K +      +   L  L    +EKI         K   +   S+GF  R  +
Sbjct: 421 DRFALDIVKALTMSGVEVPSSLQELTDRFMEKI---------KAGSMQYNSSGFGGRGLE 471

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
               ++  +   + + +   + +I++++   +    +
Sbjct: 472 QLDKERDLVKRIQKKSLVGGEYEIEDDEEQQIMLDDD 508


>gi|326474132|gb|EGD98141.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Trichophyton
           tonsurans CBS 112818]
          Length = 809

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 123/427 (28%), Positives = 203/427 (47%), Gaps = 37/427 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +++ GL  +++  +   GY  P+PIQ  +IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 370 SWSESGLPKRLLEIIDSVGYKDPSPIQRVSIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 429

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                    E    R   P  +IL PTRELA Q+     K+    N  V  ++GG   E 
Sbjct: 430 YISSLPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEE 489

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 490 QAYNLRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 549

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ------- 227
           P + +          +            ++  + T +  +                    
Sbjct: 550 PVSNEKPDTEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 609

Query: 228 -----------------YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
                              K+   L ++L S++     I+F N K+N   +   ++  GF
Sbjct: 610 IGEAVDTVEQRVEFVAGEDKRKKRLAEILTSREYRPPIIVFVNIKRNCDAVARDIKHMGF 669

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++    E+Y 
Sbjct: 670 SAVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYT 729

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ 
Sbjct: 730 HRIGRTGRAGKSGVAITFLGNEDNDVLYDLKQML------MKSSISRVPEELRKHEAAQS 783

Query: 391 NHARKNN 397
              R N 
Sbjct: 784 KPIRGNG 790


>gi|297830944|ref|XP_002883354.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329194|gb|EFH59613.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 615

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 122/373 (32%), Positives = 204/373 (54%), Gaps = 6/373 (1%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-- 61
           ++LG+SP++V A+   G  K  PIQ   +   +Q  D+ G A+TGTGKT +F +P++   
Sbjct: 123 SELGISPEIVKALKGRGIEKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPVIDKI 182

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                   R + P+ L+L PTRELA QV   F +   + +       GG P   Q ++L 
Sbjct: 183 IKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICL--YGGTPIGQQMRELN 240

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV + TPGRI+D   RG L ++ ++ +V+DEAD+ML +GF   ++ I   +P  RQ+
Sbjct: 241 YGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPEKRQS 300

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSATM   ++ +++ +L NP  I++   S           +  A    + +++  L+ 
Sbjct: 301 MMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVN 360

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K++          + F   A+HG+I Q  R + L+ F++G   ++V
Sbjct: 361 EHGKGGKCIVFTQTKRDADR-LAFGLAKSFKCEALHGDISQAQRERTLAGFRDGNFNILV 419

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+P+V  V ++++PN  E ++HR GRTGRAG+ G A  +  +E  + +  I
Sbjct: 420 ATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQEQSRAVKMI 479

Query: 361 EKLIEKKVDWLNG 373
           EK +  + + L  
Sbjct: 480 EKEVGSRFNELPS 492


>gi|195030246|ref|XP_001987979.1| GH10918 [Drosophila grimshawi]
 gi|193903979|gb|EDW02846.1| GH10918 [Drosophila grimshawi]
          Length = 1791

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 120/382 (31%), Positives = 200/382 (52%), Gaps = 9/382 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L   V+  V+ +GY  PTPIQ  ++P++ +  D+   AQTG+GKTA+F+LPM+ 
Sbjct: 183 SFEGAQLRSIVLNNVIKSGYKVPTPIQKVSMPVISEGRDLMACAQTGSGKTAAFLLPMIC 242

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               E     +  P+ +I+ PTRELA Q+     K+     L ++++ GG   + QN+ +
Sbjct: 243 KLLDEVDNVEIGKPQAVIVSPTRELAIQIFHEARKFAFTSYLKISIVYGGTSVKYQNECI 302

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  +LI TPGR+LD  +R  +       +V+DEADRMLDMGF   ++ I        +
Sbjct: 303 TKGCHLLIATPGRLLDFVDRTFITFEATRFVVLDEADRMLDMGFADSMRKIMQHQTMRPE 362

Query: 180 TL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
               +FSAT  +E+Q+++  FL N   + +         ++     T+ +  K     + 
Sbjct: 363 HQTLMFSATFPEEIQRMAGEFLNNYIFVAIGVVGGACSDVQQ----TFHELKKFDKRSKL 418

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +   Q+     I+F   K+    L   L +  F   +IHG+  Q  R + L +FK G ++
Sbjct: 419 MDILQEGADGTIVFVETKRGADFLASILSETKFPTTSIHGDRLQSQREQALRDFKTGHMK 478

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKH 356
           +++A+ +AARGLDI +V HV N+D+P   ++Y+HRIGRTGR G  G+A +     +D   
Sbjct: 479 VLIATSVAARGLDIKNVKHVINYDMPKTVDDYVHRIGRTGRVGNRGRATSFFDPNQDRGI 538

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
              + K+++     +   L  +
Sbjct: 539 AADLIKVLQGSSQVVPDFLQEM 560


>gi|15228722|ref|NP_188870.1| PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1); ATP-dependent
           helicase/ DNA binding / RNA binding [Arabidopsis
           thaliana]
 gi|75335517|sp|Q9LUW6|RH9_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 9
 gi|9293865|dbj|BAB01768.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
 gi|20268676|gb|AAM14042.1| putative RNA helicase [Arabidopsis thaliana]
 gi|332643099|gb|AEE76620.1| DEAD-box ATP-dependent RNA helicase 9 [Arabidopsis thaliana]
          Length = 610

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 121/373 (32%), Positives = 205/373 (54%), Gaps = 6/373 (1%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-- 61
           ADLG+SP++V A+   G  K  PIQ   +   ++  D+ G A+TGTGKT +F +P++   
Sbjct: 119 ADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKI 178

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                   R + P+ L+L PTRELA QV   F +   + +       GG P   Q ++L 
Sbjct: 179 IKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICL--YGGTPIGQQMRELN 236

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV + TPGRI+D   RG L ++ ++ +V+DEAD+ML +GF   ++ I   +P  RQ+
Sbjct: 237 YGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQS 296

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSATM   ++ +++ +L NP  I++   S           +  A    + +++  L++
Sbjct: 297 MMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVK 356

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K++          + +   A+HG+I Q  R + L+ F++G   ++V
Sbjct: 357 EHGKGGKCIVFTQTKRDADR-LAFGLAKSYKCEALHGDISQAQRERTLAGFRDGNFSILV 415

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+P+V  V ++++PN  E ++HR GRTGRAG+ G A  +  ++  + +  I
Sbjct: 416 ATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMI 475

Query: 361 EKLIEKKVDWLNG 373
           EK +  + + L  
Sbjct: 476 EKEVGSRFNELPS 488


>gi|157693344|ref|YP_001487806.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus pumilus
           SAFR-032]
 gi|157682102|gb|ABV63246.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus pumilus
           SAFR-032]
          Length = 480

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 141/434 (32%), Positives = 225/434 (51%), Gaps = 34/434 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    LS  +  A+    +  PTP+Q +T+ +   + D+   +QTG+GKTA++ LP+  
Sbjct: 5   QFDQYPLSDDLKQALKALHFHTPTPVQHETLSVAFSKQDLIVKSQTGSGKTAAYGLPICE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +++    +   P+ LIL PTRELA QV  +    G+   +  A + G  PF+AQ  +L +
Sbjct: 65  MVDWAENK---PQALILVPTRELAMQVKQDLTSLGRLKRIKAAAIFGKAPFQAQKIELAQ 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++  TPGR+LDH  +G L + N++  V+DEAD ML+MGFI  + +I   +P  R ++
Sbjct: 122 KNHIVCGTPGRVLDHLEKGTLSLENLKFFVLDEADEMLNMGFIDQVSSIIQYLPPKRMSM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM+DE++K+SE FLQ+PK IE+    ++   I H          +    L Q    
Sbjct: 182 LFSATMSDEMKKLSEQFLQSPKVIEIAREETSVPQITH---TVIETEEEAKFSLLQRTIV 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +   + IIFCN +  V  L   L++       IHG + Q  R  ++  FK G  + ++A
Sbjct: 239 IENPDSCIIFCNTQDRVNELTMKLDEWDVPCDKIHGGMRQEDRFAVMDEFKNGEFRYLIA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ D+ HV ++D+P   E YIHR GRTGRAG+ GK    + +     ID ++
Sbjct: 299 TDIAARGIDVSDMTHVIHYDLPYEKERYIHRTGRTGRAGKSGKTIAFMTRNAKPLIDELK 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           +  E  +D+         P   K D  QH                         +K   P
Sbjct: 359 E--EAGIDF------KTQPYPTKEDAEQHV--------------------ERFEEKIETP 390

Query: 422 LKESEKISKLQQDI 435
           +++  K + +++DI
Sbjct: 391 IQKENKQAGVEKDI 404


>gi|66805957|ref|XP_636700.1| hypothetical protein DDB_G0288501 [Dictyostelium discoideum AX4]
 gi|74896924|sp|Q54IV3|DDX42_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx42; AltName:
           Full=DEAD box protein 42
 gi|60465098|gb|EAL63199.1| hypothetical protein DDB_G0288501 [Dictyostelium discoideum AX4]
          Length = 986

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 130/379 (34%), Positives = 198/379 (52%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   G    ++ A+       PTPIQ + IP+ L   D+  IA+TG+GKTA+F+ P ++
Sbjct: 306 SFGHYGFDDILLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSIS 365

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       +   P  L L PTRELA Q+     KY K + L   +L GG+  + Q K+L
Sbjct: 366 HIMDQPYLEKGDGPIALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKEL 425

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++++ TPGR++D        +N +  LV+DEAD+M D GF P + +I + V   RQ
Sbjct: 426 KAGCEIIVATPGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQ 485

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    +++ +   L +P +I +    S    I        +   K   L  QL 
Sbjct: 486 TLLFSATFKPNVEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDSDKWNWLTNQLA 545

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    I    +   V  L  +L K GF  C +HG+ +Q  R + +  FKEG I ++
Sbjct: 546 LLLSQGSVLIFVSTKVA-VEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINIL 604

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDIP + +V N+D     E++ HRIGRTGRAG  G A+TL+  +DI     
Sbjct: 605 IATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKDIHFSVD 664

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K +E    ++  +L  +
Sbjct: 665 LIKNLESASQFVPPELIDV 683


>gi|316979290|gb|EFV62098.1| ATP-dependent RNA helicase Dbp2 [Trichinella spiralis]
          Length = 540

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 129/381 (33%), Positives = 206/381 (54%), Gaps = 4/381 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F ++G +  +   + ++ + KP+ IQ  + P+ L   D+ GIAQTG+GKT SF+LP  
Sbjct: 98  LTFEEVGFTDSLTKQL-NSNFAKPSVIQATSWPIALSGRDMVGIAQTGSGKTLSFLLPSI 156

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +    +    R   P  L+L PTRELA QV +   +YG    +    + GG     Q ++
Sbjct: 157 VHIKHQPRVERGEGPIVLVLAPTRELAQQVQEVAIEYGSRNGVRSVCVYGGASKGPQQRE 216

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG +V I TPGR+LD    G   +     LV+DEADRMLDMGF P I+ I       R
Sbjct: 217 LERGVEVCIATPGRLLDFLRMGVTNLRRCTFLVLDEADRMLDMGFEPQIRQIVDQTRPDR 276

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL-LQQ 237
           QT++FSAT   E++ ++E+FL++   + + +    A       V   +++ K   L    
Sbjct: 277 QTIMFSATWPTEVRALAESFLRDYVFVNIGSLQLAANHNIEQVVEIVSEFEKHERLLKLL 336

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              ++D+    +IF   K+    L   L ++G+ V +IHG+  Q  R  +L+ F+ G   
Sbjct: 337 QEVTKDSDPKVLIFVETKRKADELTRWLRQKGWPVLSIHGDKAQGERDWVLNEFRTGKSP 396

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARGLD+ D+  V N+D P  +E+Y+HRIGRTGR  R G A+T     + ++ 
Sbjct: 397 IVIATDVAARGLDVDDIKFVVNYDYPQCSEDYVHRIGRTGRCNRTGTAYTFFNANNARYA 456

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             +  ++ +    +N  L  L
Sbjct: 457 KDLIDVLIEAKQHVNPKLYEL 477


>gi|156555544|ref|XP_001603956.1| PREDICTED: similar to vasa-like protein [Nasonia vitripennis]
          Length = 732

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 140/390 (35%), Positives = 211/390 (54%), Gaps = 14/390 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  L   +   +  +GY KPTP+Q   IP++L   D+   AQTG+GKTA+F++P++ 
Sbjct: 303 SFDEANLRVLLNTNIKKSGYTKPTPVQKYGIPILLSGRDLMACAQTGSGKTAAFLIPIIH 362

Query: 62  I--------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                     +   A    PR LI+ PTREL  Q+ D   K+ K+  L   ++ GG    
Sbjct: 363 TLLAKDRDLSDMSSANQVEPRALIISPTRELTIQIFDEARKFSKDSVLKCHIIYGGTSTS 422

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI----QN 169
            Q K++ +G D+L+ TPGR+LD   +GK+  + IE +V+DEADRMLDMGF+P +    ++
Sbjct: 423 HQMKQIFQGVDILVATPGRLLDLVGKGKITFDAIEFVVLDEADRMLDMGFLPDVEKVLRH 482

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
            T   P  RQTL+FSAT   E+Q+++  FL N   + V    S    IE  F        
Sbjct: 483 DTMKPPGERQTLMFSATFPQEIQQLAAKFLNNYVFVTVGIVGSACTDIEQSFFEVKKSDK 542

Query: 230 KKCALLQQLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           +         + +  M NGI +F ++KK    +   L +  F   +IHG+  QR R + L
Sbjct: 543 RTKLKELLNEEIEQNMLNGILVFVSEKKTADFIAALLSEDNFPTTSIHGDRLQREREEAL 602

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +FK G + ++VA+ +AARGLDI +V HV N+D+P   + YIHRIGRTGR G  GKA + 
Sbjct: 603 YDFKTGKMAILVATAVAARGLDIKNVRHVINYDLPKEIDEYIHRIGRTGRVGNKGKATSF 662

Query: 349 VAK-EDIKHIDAIEKLIEKKVDWLNGDLSS 377
                D K    + +++ +    +   L+S
Sbjct: 663 FDPRYDEKLQGDLVRVLTQAGQEVPDWLAS 692


>gi|240254385|ref|NP_177829.4| ATP binding / ATP-dependent helicase/ RNA binding / helicase/
           hydrolase, acting on acid anhydrides, in
           phosphorus-containing anhydrides / nucleic acid binding
           [Arabidopsis thaliana]
          Length = 891

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 135/415 (32%), Positives = 223/415 (53%), Gaps = 8/415 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P V  A+   GY  PTPIQ KT+PL+L   DV  +A+TG+GKTA+F++PML  
Sbjct: 30  FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++   +    R LIL PTR+LA Q     ++ GK  +L V+LL+GG   E Q ++L +G
Sbjct: 90  LKQHVPQGG-VRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKG 148

Query: 123 ADVLICTPGRILD-HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR++        + +  +E +V DEAD +  MGF   +  I + +   RQTL
Sbjct: 149 PDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTL 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L + ++  L+ P+ + ++  +  +  +      T     K  ALL  + + 
Sbjct: 209 LFSATLPSALAEFAKAGLREPQLVRLDVENKISPDL-KLSFLTVRPEEKYSALLYLVREH 267

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  +IF + K +V  +    + +       +G++DQ +R   +S F+     L++ 
Sbjct: 268 ISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLLIV 327

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP + +V N+D P R + ++HR+GR  RAGR G A++ V  ED+ ++  + 
Sbjct: 328 TDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYMLDLH 387

Query: 362 KLIEKKVDWLNGD---LSSLNPPLEKIDIAQHNHARKNNPIPQKSTG--FDRRKK 411
             + K V     +   L ++   + K   A  +        PQK+    F+R ++
Sbjct: 388 LFLSKPVRPAPTEDEVLKNMEEVMTKTSQAIDSGVTVYGRFPQKTIDLIFNRTRE 442


>gi|256083681|ref|XP_002578069.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238663419|emb|CAZ34307.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 944

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 143/422 (33%), Positives = 220/422 (52%), Gaps = 24/422 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   +   V  A Y+ PTP+Q   +P++  + D+   AQTG+GKTA+F+LP+L 
Sbjct: 160 SFNDVELHQIIKENVTRAQYIHPTPVQKYALPIIAAKRDLMACAQTGSGKTAAFLLPILN 219

Query: 62  ILEKGRARVR----------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
           +L +                 P  LIL PTREL++Q+ D   K+    N+   ++ GG  
Sbjct: 220 MLFEDNHCENSDASALSCAVCPLALILAPTRELSSQIYDEARKFSYRSNIKPCVVYGGAS 279

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
             AQ ++L  G ++L+ TPGR++D  +RGK+ +  I   V+DEADRMLDMGF P I+ I 
Sbjct: 280 ILAQIRELSHGCNLLVATPGRLVDMVSRGKVSLEQIRFFVLDEADRMLDMGFEPQIRRIV 339

Query: 172 SLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
                      QTL+FSAT   E+Q ++ +FL +   + V    ST E I          
Sbjct: 340 EQHGMPPAGKRQTLMFSATFPKEIQTLARDFLHSYIFLAVGRVGSTNENIIQEV--LNVA 397

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
              K  +L +LLQ +D     ++F   K+    L   L +  F V +IHG+  Q  R   
Sbjct: 398 DKDKPDMLVRLLQGKDPDGLALVFVETKRGADVLAKFLCQLNFPVTSIHGDRPQTEREHA 457

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L +F+ G   +++A+ +AARGLDIP+V HV NFD+P+  E Y+HRIGRTGR G+ G A +
Sbjct: 458 LQSFRSGRTPILIATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRMGQPGSATS 517

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE-KIDIAQHNHARKNNPIPQKSTGF 406
             ++++   +  +       V+ L     ++ P LE ++       +R+N  I       
Sbjct: 518 FFSEKNQNVVRDL-------VELLRESKQAVPPWLEARVAYPSGPASRRNKNINSNVNKK 570

Query: 407 DR 408
           +R
Sbjct: 571 NR 572


>gi|75318355|sp|O49289|RH29_ARATH RecName: Full=Putative DEAD-box ATP-dependent RNA helicase 29
 gi|2829912|gb|AAC00620.1| Similar ATP-dependent RNA Helicase [Arabidopsis thaliana]
 gi|332197806|gb|AEE35927.1| DEAD-box helicase domain-containing protein [Arabidopsis thaliana]
          Length = 845

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 135/415 (32%), Positives = 223/415 (53%), Gaps = 8/415 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P V  A+   GY  PTPIQ KT+PL+L   DV  +A+TG+GKTA+F++PML  
Sbjct: 30  FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++   +    R LIL PTR+LA Q     ++ GK  +L V+LL+GG   E Q ++L +G
Sbjct: 90  LKQHVPQGG-VRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKG 148

Query: 123 ADVLICTPGRILD-HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV+I TPGR++        + +  +E +V DEAD +  MGF   +  I + +   RQTL
Sbjct: 149 PDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTL 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L + ++  L+ P+ + ++  +  +  +      T     K  ALL  + + 
Sbjct: 209 LFSATLPSALAEFAKAGLREPQLVRLDVENKISPDL-KLSFLTVRPEEKYSALLYLVREH 267

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  +IF + K +V  +    + +       +G++DQ +R   +S F+     L++ 
Sbjct: 268 ISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLLIV 327

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP + +V N+D P R + ++HR+GR  RAGR G A++ V  ED+ ++  + 
Sbjct: 328 TDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYMLDLH 387

Query: 362 KLIEKKVDWLNGD---LSSLNPPLEKIDIAQHNHARKNNPIPQKSTG--FDRRKK 411
             + K V     +   L ++   + K   A  +        PQK+    F+R ++
Sbjct: 388 LFLSKPVRPAPTEDEVLKNMEEVMTKTSQAIDSGVTVYGRFPQKTIDLIFNRTRE 442


>gi|19115564|ref|NP_594652.1| ATP-dependent RNA helicase Hca4 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|74625979|sp|Q9UTP9|DBP4_SCHPO RecName: Full=ATP-dependent RNA helicase dbp4
 gi|6318264|emb|CAB60250.1| ATP-dependent RNA helicase Hca4 (predicted) [Schizosaccharomyces
           pombe]
          Length = 735

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 219/464 (47%), Gaps = 20/464 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           FA+L L+     A+ +A ++  T IQ + IP  L+  D+ G A+TG+GKT +F++P +  
Sbjct: 41  FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  K    +     L++ PTRELA Q  +   K G+ ++ +  L+IGG  ++ + ++L R
Sbjct: 101 LYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR 160

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +           + +++L++DEADR+LDMGF   +  I S +P  RQT+
Sbjct: 161 MNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTM 220

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   LQNP  I V+   +++              ++K   +      
Sbjct: 221 LFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKL-DILFGFIR 279

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC--AIHGNIDQRSRMKILSNFKEGTIQLM 299
                  I+F +  K V  +  +  +    +    +HG   Q +R ++ + F      ++
Sbjct: 280 THLKFKTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVL 339

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
             +D+ ARGLD P V  V   D P   + YIHR+GRT R  R G A  L+   +   +  
Sbjct: 340 FCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLPSEEAFLKR 399

Query: 360 IE--KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           +E  K+  ++++  +G  +S+   L+ +         K+N I          +K + S  
Sbjct: 400 LESKKIAVERINVKDGKKTSIRNQLQNLCF-------KDNDIKYIG------QKAFISYL 446

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRGNMP-AFMLPKNRGK 460
             I L++ + + +L +   E  ADSLG  G     F   KN  +
Sbjct: 447 RSIYLQKDKDVFQLDKLPVEAFADSLGLPGTPKITFGKLKNHSQ 490


>gi|127511532|ref|YP_001092729.1| ATP-dependent RNA helicase DbpA [Shewanella loihica PV-4]
 gi|126636827|gb|ABO22470.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 468

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 148/402 (36%), Positives = 226/402 (56%), Gaps = 10/402 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L+P ++  +   G+ + TPIQ +++P +L   DV G  +TG+GKTA+F L +L  
Sbjct: 13  FDSLPLNPALLDTLKSIGFHQMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGLLNK 72

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+  R R++   TL+L PTRELA QVA       +  +    L +  G+P   Q   LE 
Sbjct: 73  LDVKRFRIQ---TLVLCPTRELADQVAAELRTLARGIHNIKILTLCGGVPMGPQIGSLEH 129

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG+L ++N++ LV+DEADRML+MGF   +  I   VP  RQTL
Sbjct: 130 GAHIIVGTPGRIIDHLDRGRLDLDNVDTLVLDEADRMLEMGFQRELDAIMQEVPRERQTL 189

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  +++Q +SE F+ +P  ++V          +H         +       QLL  
Sbjct: 190 LFSATFPEQIQGLSEQFMIDPLMVKVEVQHGGESIEQH---FYECGNNNDRMKALQLLLL 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   ++ ++FCN K+   ++   L   GFSV A+HG+++QR R ++L  F   +  +MVA
Sbjct: 247 KHQPESAVVFCNTKRETKDVAAKLTNAGFSVVALHGDLEQRDRDQMLLKFANKSASVMVA 306

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N+ +    E +IHRIGRTGRAG  G A TL   ED   +  + 
Sbjct: 307 TDVAARGLDIDALDMVVNYHMAYDTEVHIHRIGRTGRAGSKGAAHTLFNHEDGYKLSLLA 366

Query: 362 KLIEKKVD--WLNGD-LSSLNPPLEKIDIAQHNHARKNNPIP 400
             + +++D   L G+ L    PP  ++   Q +  +K    P
Sbjct: 367 DALGREIDGEALPGEALLDTMPPQPRMVTIQIDGGKKQKVRP 408


>gi|198462641|ref|XP_001352498.2| GA16838 [Drosophila pseudoobscura pseudoobscura]
 gi|198150914|gb|EAL29995.2| GA16838 [Drosophila pseudoobscura pseudoobscura]
          Length = 852

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 119/431 (27%), Positives = 216/431 (50%), Gaps = 3/431 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   GY  PTPIQ KTIPL+L+  DV  +A+TG+GKTA F++P+   
Sbjct: 41  FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++        R LIL PTRELA Q     ++ G+   L   L++GG   ++Q   +   
Sbjct: 101 LQRRDPTKGA-RALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHTC 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR L       L +N+I+ +V DEADR+ +MGF   +      +P TRQ ++
Sbjct: 160 PDVIVATPGRFLHLCVEMDLKLNSIDYVVFDEADRLFEMGFGEQLNETLHRLPATRQMVM 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L   +   L +P  I ++  S   + +            +  AL+  L    
Sbjct: 220 FSATLPKLLVDFARAGLNDPVLIRLDVESKLPDAL-ALKFLHCRPDDRYTALVVLLKYVI 278

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   + +V  +   L + G S  +++ ++D  +R    + F    + +++ +
Sbjct: 279 PKESQTVVFAGTQHHVELISFILGEAGISNTSVYSSLDPAARKINTAKFVNKKVSVLIVT 338

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP + +V N   P + + ++HR+GR  RAGR G A+++ + +D  H+  +  
Sbjct: 339 DVAARGIDIPSLDYVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIFSTDDTAHLLDLHL 398

Query: 363 LIEKKVDWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
            + +  +  +   + ++   L + +    N  +K++ I       +   K Y S +    
Sbjct: 399 FLNRPFNIHDSSTMGTIPQDLLEEEHLSVNEIKKSHHIAGVLRTSENAYKKYLSSRPVAS 458

Query: 422 LKESEKISKLQ 432
              + ++ K++
Sbjct: 459 TDANARVKKIK 469


>gi|195170534|ref|XP_002026067.1| GL16100 [Drosophila persimilis]
 gi|194110947|gb|EDW32990.1| GL16100 [Drosophila persimilis]
          Length = 854

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 119/431 (27%), Positives = 216/431 (50%), Gaps = 3/431 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   GY  PTPIQ KTIPL+L+  DV  +A+TG+GKTA F++P+   
Sbjct: 41  FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++        R LIL PTRELA Q     ++ G+   L   L++GG   ++Q   +   
Sbjct: 101 LQRRDPTKGA-RALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHTC 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR L       L +N+I+ +V DEADR+ +MGF   +      +P TRQ ++
Sbjct: 160 PDVIVATPGRFLHLCVEMDLKLNSIDYVVFDEADRLFEMGFGEQLNETLHRLPATRQMVM 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L   +   L +P  I ++  S   + +            +  AL+  L    
Sbjct: 220 FSATLPKLLVDFARAGLNDPVLIRLDVESKLPDAL-ALKFLHCRPDDRYTALVVLLKYVI 278

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   + +V  +   L + G S  +++ ++D  +R    + F    + +++ +
Sbjct: 279 PKESQTVVFAGTQHHVELISFILGEAGISNTSVYSSLDPAARKINTAKFVNKKVSVLIVT 338

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP + +V N   P + + ++HR+GR  RAGR G A+++ + +D  H+  +  
Sbjct: 339 DVAARGIDIPSLDYVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIFSTDDTAHLLDLHL 398

Query: 363 LIEKKVDWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
            + +  +  +   + ++   L + +    N  +K++ I       +   K Y S +    
Sbjct: 399 FLNRPFNIHDSSTMGTIPQDLLEEEHLSVNEIKKSHHIAGVLRTSENAYKKYLSSRPVAS 458

Query: 422 LKESEKISKLQ 432
              + ++ K++
Sbjct: 459 TDANARVKKIK 469


>gi|169335734|ref|ZP_02862927.1| hypothetical protein ANASTE_02154 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258472|gb|EDS72438.1| hypothetical protein ANASTE_02154 [Anaerofustis stercorihominis DSM
           17244]
          Length = 510

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 144/420 (34%), Positives = 211/420 (50%), Gaps = 17/420 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L ++  +   + + G+  PT IQ K IP +    DV G +QTGTGKT +F +P + 
Sbjct: 5   TFSELEINLDINRVLDEMGFTNPTDIQNKAIPAIRSGVDVIGKSQTGTGKTIAFAIPAIE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  + +    + LI+ PTRELA Q     +K  K       + I G     +     +
Sbjct: 65  KIDIEQEKPTA-QVLIICPTRELAQQGYAEIKKLTKYMPEIKVVDIYGGVSMERQISKLK 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            A ++I TPGRI DH  R  L + NI+++V+DEAD ML MGF   I  I    P TRQT+
Sbjct: 124 KAHIVIGTPGRIKDHLKRRTLKLQNIKMVVLDEADEMLSMGFKEDIDTILKTAPDTRQTV 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +  + + FL+NP  I+++    T   I   ++       K+   L      
Sbjct: 184 LFSATMPPAIMNIIDTFLKNPLLIQIDKEQVTVNKIAQNYIDVPKGKKKEVLNLLL---H 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  IIFCN K+ V +L   L K GFS   +HG+I Q  R +++SNFK     ++VA
Sbjct: 241 YYGSKLTIIFCNTKRMVDDLTKFLRKNGFSAECLHGDIRQNERSRVMSNFKNAKTPILVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV +V N+D+P  +E YIHRIGRT R G+ G + T+             
Sbjct: 301 TDVAARGIDVKDVEYVINYDIPQNSEYYIHRIGRTARGGKTGTSITMTNN---------- 350

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
               K+V  L   L   N  ++K+DI   N     N     S      K+  +S    I 
Sbjct: 351 ---RKQVTDLKMILKETNSKIKKLDIPTKNDINSKNSKDNMSVIISALKRENNSHDEMIS 407


>gi|157123872|ref|XP_001653950.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882852|gb|EAT47077.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 718

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 128/419 (30%), Positives = 208/419 (49%), Gaps = 4/419 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           M F + G     +  +   G+ +PT IQ     + +   D+ GIA+TG+GKT +++LP  
Sbjct: 101 MQFGESGFPSVFLDEMGRQGFQEPTSIQAVGWSIAMSGRDMVGIAKTGSGKTLAYILPAL 160

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +    +    R   P  L+L PTRELA Q+      +G+  ++    + GG     Q   
Sbjct: 161 IHISNQPRLLRGDGPIALVLAPTRELAQQIQQVCNDFGRRMSIMNTCIFGGASKHPQADD 220

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG +++I TPGR++D    G   +     LV+DEADRMLDMGF P I+ I S +   R
Sbjct: 221 LRRGVEIVIATPGRLIDFLESGTTNLRRTTYLVLDEADRMLDMGFEPQIRKIISQIRPDR 280

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQ 237
           Q L++SAT   E++K++E FL+   +I + + +  A       +    +Y K+       
Sbjct: 281 QVLMWSATWPKEIRKLAEEFLREYIQINIGSLNLAANENIMQIIECCEEYEKETRLFKLL 340

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              SQ      IIF   K+ V  + + +++ G+    IHG+  Q+ R  +L+ F+     
Sbjct: 341 TELSQQGDSKSIIFVETKRKVDQITNVIKRNGWRCDGIHGDKTQKDRDYVLNTFRRLRSG 400

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A+RGLD+ DV +V NFD PN  E+YIHRIGRTGR+   G ++T     +    
Sbjct: 401 ILVATDVASRGLDVDDVKYVINFDFPNNTEDYIHRIGRTGRSTNKGTSYTFFTPANGAKA 460

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ-KSTGFDRRKKNYSS 415
             +  ++ +   ++N +L        +                Q ++ G  RR  +Y S
Sbjct: 461 GDLIGVLREANQFVNPELEQYARSGGRNRSGGRGRYGGGGGGRQMRNDGKGRRGDDYRS 519


>gi|158796|gb|AAA29013.1| Mab4611 antigen (vasa) [Drosophila melanogaster]
          Length = 648

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 204/368 (55%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++  V  +GY  PTPIQ  +IP++    D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 234 FTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSK 293

Query: 63  LEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L +    +    P+  I+ PTRELA Q+ +   K+     L + ++ GG  F  QN+ + 
Sbjct: 294 LLEDPHELELGRPQVCIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECIT 353

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V+I TPGR+LD  +R  +   +   +V+DEADRMLDMGF   ++ I + V    + 
Sbjct: 354 RGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEH 413

Query: 181 L--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
              +FSAT  +E+Q+++  FL+N   + +         ++     T  + +K     + +
Sbjct: 414 QTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQ----TIYEVNKYAKRSKLI 469

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               +     I+F   K+    L   L ++ F   +IHG+  Q  R + L +FK G++++
Sbjct: 470 EILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKV 529

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHI 357
           ++A+ +A+RGLDI ++ HV N+D+P++ ++Y+HRIGRTGR G +G+A +    E D    
Sbjct: 530 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFHPEKDRAIA 589

Query: 358 DAIEKLIE 365
             + K++E
Sbjct: 590 ADLVKILE 597


>gi|308181071|ref|YP_003925199.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308046562|gb|ADN99105.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 447

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 128/453 (28%), Positives = 203/453 (44%), Gaps = 26/453 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L P ++ A+ D  + KPT +Q K IP++     V G + TG+GKT +F+LPM+ 
Sbjct: 4   SFEDFKLQPFLMQALTDINFRKPTAVQEKLIPVIAAGRSVIGQSATGSGKTHTFLLPMIN 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L      V+   T             A    ++          + G    E   K    
Sbjct: 64  QLNADERYVQAVITTPSRELAYQIQTAAKQLIQHSPKAIHIGLYVGGTDKQEQIEKLNRH 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD      L ++    LV+DEAD  LD+GF+  +  I   +P   Q L
Sbjct: 124 QPQLIIGTPGRILDLMRSQALDVHRATQLVVDEADMTLDLGFLNVVDQIAGRMPADLQML 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  +L      ++ NP   E+   S  + TI++  ++T +              +
Sbjct: 184 VFSATMPQKLTPFLRKYMNNPVMEEIPVESVISPTIDNWLISTKSHDKNSIIYRLL---T 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  +IF N K+ V  L H L +QG ++  IHG+I  R R +++ + ++   Q +VA
Sbjct: 241 IGEPYLVLIFANTKERVQELTHYLRQQGLTIAMIHGDIQPRERKRVMRDVQQLKYQFVVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+DI  V HV N D+PN  E +IHR+GRTGR G  G A TL +  +   + A+E
Sbjct: 301 TDLAARGIDIEGVSHVINDDIPNDLEFFIHRVGRTGRNGMAGTAITLYSPGEEAKVSAVE 360

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK----------------STG 405
            +    + +    +       E +D    N   K  P  +K                  G
Sbjct: 361 AM---GIKFKPKAIRDG----EIVDSYDRNRRAKRGPKQEKLDPTLIGYVKKSKKKIKPG 413

Query: 406 FDRRKKNYSSQKSHIPLKESEKISKLQQDIQEN 438
           + RR +   S K+ +  +  ++ +  ++     
Sbjct: 414 YKRRIRKKISDKARMDRRIEQRAAARKERKDRK 446


>gi|167840691|ref|ZP_02467375.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis MSMB43]
          Length = 458

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 150/407 (36%), Positives = 220/407 (54%), Gaps = 17/407 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L
Sbjct: 1   MPFSTLPLTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L+    R    + L+L PTRELA QVA    +  +       L +  G P   Q + L
Sbjct: 61  ARLDA---RRFDVQALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA +++ TPGRI+DH +RG L +  +  LV+DEADRMLDMGF   I  +    P  RQ
Sbjct: 118 EHGAHIIVGTPGRIMDHLDRGTLTLGALNTLVLDEADRMLDMGFFDDIAKVARQCPPARQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  D + K+S+ FL+NPK ++++     ++         Y     +      LL
Sbjct: 178 TLLFSATYPDGIAKLSQQFLRNPKEVKLDERHDDSKI----RQRFYEVTEDERLHAVGLL 233

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +     + I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++
Sbjct: 234 LNHYRPVSTIAFCNTKQQCRDLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  +  
Sbjct: 294 VATDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGG 353

Query: 360 IEKLIEKKVDW-----LNGDL-SSLNPPLEKIDIAQHNHARKNNPIP 400
           IE+  ++ V+W     L  D    L PP+E + I      RK+   P
Sbjct: 354 IEQAQKRDVEWHPLAELKADRNEPLLPPMETLQIL---GGRKDKIRP 397


>gi|55749865|ref|NP_874358.2| DEAD box protein 53 [Homo sapiens]
 gi|143811384|sp|Q86TM3|DDX53_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX53; AltName:
           Full=Cancer-associated gene protein; AltName:
           Full=Cancer/testis antigen 26; Short=CT26; AltName:
           Full=DEAD box protein 53; AltName: Full=DEAD box protein
           CAGE
 gi|119619396|gb|EAW98990.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Homo sapiens]
          Length = 631

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 123/397 (30%), Positives = 210/397 (52%), Gaps = 5/397 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI---LEKG 66
           P ++ +++  G VKPTPIQ +  P++LQ  D+  +AQTGTGKT S+++P           
Sbjct: 231 PDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS 290

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTRELA  V     KY      ++ +  GG     Q + + +G D++
Sbjct: 291 REQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIY-GGRNRNGQIEDISKGVDII 349

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + +I  LVIDEAD+MLDM F P I+ I   V   RQT++ SAT
Sbjct: 350 IATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSAT 409

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             D +++++ ++L++P  + V   +  A       +    +  K+    Q+ +++     
Sbjct: 410 WPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALT-QEFVENMSPND 468

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+F +QK    +L      QG S  ++HGN +Q  + + + +FK G I++++ +D+ +
Sbjct: 469 KVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIVS 528

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLD+ DV HV+N+D P   + Y+HR+G  GR G+ G + TL+ + D K    + K++++
Sbjct: 529 RGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELIKILDR 588

Query: 367 KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
               +  DL  +    +     +H   R   P  ++ 
Sbjct: 589 ANQSVPEDLVVMAEQYKLNQQKRHRETRSRKPGQRRK 625


>gi|254571881|ref|XP_002493050.1| ATP-dependent RNA helicase of the DEAD box family [Pichia pastoris
           GS115]
 gi|238032848|emb|CAY70871.1| ATP-dependent RNA helicase of the DEAD box family [Pichia pastoris
           GS115]
 gi|328352938|emb|CCA39336.1| ATP-dependent RNA helicase [Pichia pastoris CBS 7435]
          Length = 544

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 117/433 (27%), Positives = 191/433 (44%), Gaps = 13/433 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F DL     L  K++  + DA + +PTPIQ ++IP  L  HD+   A TG+GKT +F++
Sbjct: 114 SFEDLITRFQLDKKLLSNLADAKFTEPTPIQCESIPSTLHGHDIIACAPTGSGKTLAFLI 173

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQN 116
           P++  L + + +    R LIL PT+ELA Q+ +   K  K  NL + LL   +      +
Sbjct: 174 PLVQKLGQNQ-KNFGIRGLILSPTKELATQIHNELLKLTKGKNLIIGLLSKSLSGKLRSD 232

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
                  DV++ TP R+++    GK+ +  ++ LV+DEAD++    F+    ++      
Sbjct: 233 LIKGNKYDVMVSTPLRLIEVVRMGKIDLREVKHLVLDEADKLFAPEFLEQTDDVLHNCSN 292

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +  +   +    E  +   + +              A T     V        K   L+
Sbjct: 293 PKLQMSIYSATIPEEVEELAHSVMKEPIRINIGRKEAANTQIKQKVVYTGSEEGKLVALR 352

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q++Q+ +     +IF         L H L     +V  IH    Q  R +++  F++G I
Sbjct: 353 QMVQNSEFKPPVLIFLQSITRAKALFHELIYDKMNVDVIHSERTQIQRDRVVERFQKGDI 412

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++ +++  RG+D   +  V N+DVP  AE Y+HRIGRTGRAG  G A T   KED   
Sbjct: 413 WVLICTEVIGRGIDFKGINLVINYDVPTSAEAYVHRIGRTGRAGHTGSAVTFFTKEDSLA 472

Query: 357 IDAIEKLIEKKVD------WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           I  I  ++++         W+  +       L KI       +    P   +     RR 
Sbjct: 473 IKPIINVLKQSEQNNGYASWMETEDKLSEKELTKIKKGVERESISTVPTVIREE-RKRRG 531

Query: 411 KNYSSQKSHIPLK 423
             Y S K     K
Sbjct: 532 VLYESSKRRKSGK 544


>gi|157121045|ref|XP_001653747.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882993|gb|EAT47218.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 814

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 134/436 (30%), Positives = 221/436 (50%), Gaps = 40/436 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +++ G   +++  +   GY +PTPIQ + IP+ LQ  D+ GIA+TG+GKT +F++P+LT
Sbjct: 387 SWSETGFPKEILDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGIAETGSGKTLAFLIPLLT 446

Query: 62  ILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            ++      +     + P  +IL PTRELA Q+ +  +K+G+   +   +++GG+  E Q
Sbjct: 447 WIQSLPKIDRLETADQGPYAIILAPTRELAQQIEEETQKFGQPLGIRTVVVVGGLSREEQ 506

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 507 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 566

Query: 176 -------------------------FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
                                      RQT++F+ATM   +++++  +L+ P  + + + 
Sbjct: 567 VTNLKPDTEEAEDASKLMENFNTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSV 626

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               E  E           +K  +       +      IIF NQKK    L   LEK G+
Sbjct: 627 GKPTERTEQIVHIMTENEKRKKLMEILSRGVEPPC---IIFVNQKKGADVLAKGLEKLGY 683

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           + C +HG   Q  R   L++ K G+  ++VA+D+A RG+DI DV  V N+D+    E+Y 
Sbjct: 684 NACTLHGGKGQEQREYALASLKNGSKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYT 743

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A +   K+D      +++++      +   +S   P L     AQH
Sbjct: 744 HRIGRTGRAGKTGCAISFCTKDDSHLFYDLKQIV------VASPVSVCPPELMNHPDAQH 797

Query: 391 NHARKNNPIPQKSTGF 406
                     ++   F
Sbjct: 798 KPGTVVTKKRREEKIF 813


>gi|30353749|gb|AAH51703.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Homo sapiens]
          Length = 631

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 123/397 (30%), Positives = 210/397 (52%), Gaps = 5/397 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI---LEKG 66
           P ++ +++  G VKPTPIQ +  P++LQ  D+  +AQTGTGKT S+++P           
Sbjct: 231 PDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS 290

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTRELA  V     KY      ++ +  GG     Q + + +G D++
Sbjct: 291 REQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIY-GGRNRNGQIEDISKGVDII 349

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + +I  LVIDEAD+MLDM F P I+ I   V   RQT++ SAT
Sbjct: 350 IATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSAT 409

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             D +++++ ++L++P  + V   +  A       +    +  K+    Q+ +++     
Sbjct: 410 WPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALT-QEFVENMSPND 468

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+F +QK    +L      QG S  ++HGN +Q  + + + +FK G I++++ +D+ +
Sbjct: 469 KVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIVS 528

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLD+ DV HV+N+D P   + Y+HR+G  GR G+ G + TL+ + D K    + K++++
Sbjct: 529 RGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELIKILDR 588

Query: 367 KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
               +  DL  +    +     +H   R   P  ++ 
Sbjct: 589 ANQSVPEDLVVMAEQYKLNQQKRHRETRSRKPGRRRK 625


>gi|6118254|gb|AAF04040.1|AF187729_1 DEAD-box protein abstrakt [Drosophila melanogaster]
          Length = 614

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 126/394 (31%), Positives = 198/394 (50%), Gaps = 16/394 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G   PTPIQ++ +P VL   D+ GIA TG+GKT  FVLP++ 
Sbjct: 173 SFREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIM 232

Query: 62  I-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGI 110
                       R   P  LI+ P+RELA Q  +  + Y K+        +   L +GG+
Sbjct: 233 FALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGL 292

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
           P       + RG  +++ TPGR++D  ++  L ++    L +DEADRM+DMGF   ++ I
Sbjct: 293 PVSEALDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTI 352

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A               +
Sbjct: 353 FSFFKGQRQTLLFSATMPKKIQN----FARSALVKPVTINVGRAGAASMNVTQQVEYVKQ 408

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K++V  +   L  +G    AIHG  DQ  R + +  
Sbjct: 409 EAKVVYLLDCLQKTAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDA 468

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           ++ G   ++VA+D+A++GLD P+V HV N+D+P+  ENY+HRIGRTGR+   G A TL+ 
Sbjct: 469 YRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLIN 528

Query: 351 K-EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
           K  +   +  ++ L+ +    +   L  L P  E
Sbjct: 529 KTTEQSVLLDLKHLLIEGKQEVPDFLDELAPETE 562


>gi|17977678|ref|NP_524220.1| abstrakt [Drosophila melanogaster]
 gi|12643521|sp|Q9V3C0|DDX41_DROME RecName: Full=ATP-dependent RNA helicase abstrakt; Short=DEAD box
           protein abstrakt
 gi|6635811|gb|AAF19985.1|AF212866_1 abstrakt protein [Drosophila melanogaster]
 gi|7296891|gb|AAF52165.1| abstrakt [Drosophila melanogaster]
 gi|15291815|gb|AAK93176.1| LD28839p [Drosophila melanogaster]
 gi|220945834|gb|ACL85460.1| abs-PA [synthetic construct]
 gi|220955594|gb|ACL90340.1| abs-PA [synthetic construct]
          Length = 619

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 126/394 (31%), Positives = 198/394 (50%), Gaps = 16/394 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G   PTPIQ++ +P VL   D+ GIA TG+GKT  FVLP++ 
Sbjct: 178 SFREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIM 237

Query: 62  I-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGI 110
                       R   P  LI+ P+RELA Q  +  + Y K+        +   L +GG+
Sbjct: 238 FALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGL 297

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
           P       + RG  +++ TPGR++D  ++  L ++    L +DEADRM+DMGF   ++ I
Sbjct: 298 PVSEALDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTI 357

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     V      A               +
Sbjct: 358 FSFFKGQRQTLLFSATMPKKIQN----FARSALVKPVTINVGRAGAASMNVTQQVEYVKQ 413

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K++V  +   L  +G    AIHG  DQ  R + +  
Sbjct: 414 EAKVVYLLDCLQKTAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDA 473

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           ++ G   ++VA+D+A++GLD P+V HV N+D+P+  ENY+HRIGRTGR+   G A TL+ 
Sbjct: 474 YRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLIN 533

Query: 351 K-EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
           K  +   +  ++ L+ +    +   L  L P  E
Sbjct: 534 KTTEQSVLLDLKHLLIEGKQEVPDFLDELAPETE 567


>gi|332162007|ref|YP_004298584.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666237|gb|ADZ42881.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 460

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 126/374 (33%), Positives = 204/374 (54%), Gaps = 8/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L 
Sbjct: 5   SFSSLTLPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLD 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            +  G     + + L+L PTRELA QV+    +  +       L + G  P   Q   L 
Sbjct: 65  KIAVGE---FVTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLV 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRI +H  +  L++++++ILV+DEADRMLDMGF   I ++ +  P  RQT
Sbjct: 122 HAPHIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++         +R  VN      +         +    +K   L   + 
Sbjct: 182 LLFSATYPAGIEQ----ISARVQRQPVNVEVDDGDEAPAIEQVFFETTREKRLPLLISVL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+  ++  +LE +G SV A+HG+++QR R ++L  F   + +++V
Sbjct: 238 SHYQPASCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+  V NF++    E ++HRIGRTGRAG  G A +L   +++    AI
Sbjct: 298 ATDVAARGLDIKDLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHAI 357

Query: 361 EKLIEKKVDWLNGD 374
           E  ++ K+ W   +
Sbjct: 358 EDYLQMKLKWTPAE 371


>gi|318606043|emb|CBY27541.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 460

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 126/374 (33%), Positives = 204/374 (54%), Gaps = 8/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L 
Sbjct: 5   SFSSLTLPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLD 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            +  G     + + L+L PTRELA QV+    +  +       L + G  P   Q   L 
Sbjct: 65  KIAVGE---FVTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLV 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRI +H  +  L++++++ILV+DEADRMLDMGF   I ++ +  P  RQT
Sbjct: 122 HAPHIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++         +R  VN      +         +    +K   L   + 
Sbjct: 182 LLFSATYPAGIEQ----ISARVQRQPVNVEVDDGDEAPAIEQVFFETTREKRLPLLISVL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+  ++  +LE +G SV A+HG+++QR R ++L  F   + +++V
Sbjct: 238 SHYQPASCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+  V NF++    E ++HRIGRTGRAG  G A +L   +++    AI
Sbjct: 298 ATDVAARGLDIKDLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHAI 357

Query: 361 EKLIEKKVDWLNGD 374
           E  ++ K+ W   +
Sbjct: 358 EDYLQMKLKWTPAE 371


>gi|302911254|ref|XP_003050452.1| hypothetical protein NECHADRAFT_71876 [Nectria haematococca mpVI
           77-13-4]
 gi|256731389|gb|EEU44739.1| hypothetical protein NECHADRAFT_71876 [Nectria haematococca mpVI
           77-13-4]
          Length = 688

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 132/395 (33%), Positives = 205/395 (51%), Gaps = 21/395 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L   +   +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+
Sbjct: 198 QFTTPPLDEHLCRNIELAHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILS 257

Query: 62  ILE--------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                             GR R   P +LIL PTREL +Q+ +   K+     +   ++ 
Sbjct: 258 QAFINGPSPVPANAAGQFGRQRKAYPTSLILAPTRELVSQIYEESRKFAYRSWVRPCVVY 317

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P I
Sbjct: 318 GGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQI 377

Query: 168 QNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I      
Sbjct: 378 RRIVEGEDMPSTQDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEY 437

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
                 +        +         +IF   K+   +L   L  Q F   +IHG+  QR 
Sbjct: 438 VEDVDKRSV---LLDILHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRE 494

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G
Sbjct: 495 RERALEFFRNGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTG 554

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            A     + +   +  + +L+++    +   L ++
Sbjct: 555 IATAFFNRGNRGVVRELMELLKEANQEIPAFLETI 589


>gi|218199270|gb|EEC81697.1| hypothetical protein OsI_25294 [Oryza sativa Indica Group]
          Length = 639

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 132/390 (33%), Positives = 205/390 (52%), Gaps = 15/390 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA++ L   +   +    YVKPTP+Q   IP+ +   D+   AQTG+GKTA+F  P+++
Sbjct: 171 TFAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIIS 230

Query: 62  ILEKGRA-------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            + + R        R   P  LIL PTREL+ Q+ +   K+     + V +  GG P   
Sbjct: 231 GIMRSRPPPRSRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVKVVVAYGGAPITQ 290

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++LERG ++L+ TPGR++D   R ++ +  I+ L +DEADRMLDMGF P I+ I   +
Sbjct: 291 QLRELERGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQM 350

Query: 175 PFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                   QT+LFSAT   E+Q+++ +FL +   + V    S+ + I            +
Sbjct: 351 DMPPRGERQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIVQRVEFVLDADKR 410

Query: 231 KCALLQQLLQSQDTMKN----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              +     Q  +         ++F   K+    L + L   GF   +IHG+  Q+ R  
Sbjct: 411 SYLMDLLHAQRANGTHGKQALTLVFVETKRGADALENWLYNNGFPATSIHGDRTQQEREY 470

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G A 
Sbjct: 471 ALRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLAT 530

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
               + +      + +L+++    +   L 
Sbjct: 531 AFFNESNTPLARPLSELMQEANQEVPQWLE 560


>gi|123442077|ref|YP_001006060.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089038|emb|CAL11856.1| ATP-dependent RNA helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 460

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 126/374 (33%), Positives = 204/374 (54%), Gaps = 8/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L 
Sbjct: 5   SFSSLTLPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLD 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            +  G     + + L+L PTRELA QV+    +  +       L + G  P   Q   L 
Sbjct: 65  KIAVGE---FVTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLV 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRI +H  +  L++++++ILV+DEADRMLDMGF   I ++ +  P  RQT
Sbjct: 122 HAPHIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++         +R  VN      +         +    +K   L   + 
Sbjct: 182 LLFSATYPAGIEQ----ISARVQRQPVNVEVDDGDEAPAIEQVFFETTREKRLPLLISVL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+  ++  +LE +G SV A+HG+++QR R ++L  F   + +++V
Sbjct: 238 SHYQPASCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+  V NF++    E ++HRIGRTGRAG  G A +L   +++    AI
Sbjct: 298 ATDVAARGLDIKDLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHAI 357

Query: 361 EKLIEKKVDWLNGD 374
           E  ++ K+ W   +
Sbjct: 358 EDYLQMKLKWTPAE 371


>gi|268532748|ref|XP_002631502.1| Hypothetical protein CBG20666 [Caenorhabditis briggsae]
 gi|187022955|emb|CAP37633.1| hypothetical protein CBG_20666 [Caenorhabditis briggsae AF16]
          Length = 502

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 126/428 (29%), Positives = 207/428 (48%), Gaps = 19/428 (4%)

Query: 2   DFAD-LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F +  G +  ++  +   G+ KP+PIQ +  P++L   D  G++QTG+GKT +F+LP  
Sbjct: 84  TFKEAFGHNQSIMNEIQKNGFEKPSPIQSQMWPILLSGQDCIGVSQTGSGKTLAFLLPAF 143

Query: 61  TI------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                         +   P  L+L PTRELA Q+    +KY  N   +V L  GG     
Sbjct: 144 LHIDAQLAQYDKNEKKPSPSVLVLSPTRELAQQIEGEVKKYSYNGYKSVCLY-GGGSRSE 202

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q +  + G +++I TPGR+ D  N G + + ++  +V+DEADRMLDMGF   I+ I   +
Sbjct: 203 QVQSCKGGVEIVIATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEAAIRRILFEI 262

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS---STAETIEHCFVATYAQYSKK 231
              R   L SAT  + ++ +++ + +        T       + T    F+    ++ + 
Sbjct: 263 RPDRLVALTSATWPEAVRNLTDRYTKQAIMAVNGTLDLASCKSVTQYFEFIPQENRFDRV 322

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
           C ++  L Q        IIF   K    +L      +G +   +HG   Q  R   L   
Sbjct: 323 CEIVNFLNQQFGNSYKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDRELSLKML 382

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G +Q++VA+DLA+RG+D+PD+ HV N+D P   E Y+HR+GRTGRAGR G++ + +  
Sbjct: 383 KTGEVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGESMSFMWW 442

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            D  + D +  ++EK    +   L        + + A++    +      +    +R  K
Sbjct: 443 NDRSNFDGLISILEKSGQEVPDKL--------RQEAARYRRKCEEGRDGPRPNFRNRNNK 494

Query: 412 NYSSQKSH 419
             S Q S+
Sbjct: 495 ESSFQSSY 502


>gi|115471073|ref|NP_001059135.1| Os07g0202100 [Oryza sativa Japonica Group]
 gi|75325411|sp|Q6Z4K6|RH52B_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52B; AltName:
           Full=OsPL10b
 gi|34393986|dbj|BAC83834.1| putative DEAD-box RNA helicase DEAD3 [Oryza sativa Japonica Group]
 gi|113610671|dbj|BAF21049.1| Os07g0202100 [Oryza sativa Japonica Group]
 gi|222636630|gb|EEE66762.1| hypothetical protein OsJ_23477 [Oryza sativa Japonica Group]
          Length = 638

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 132/390 (33%), Positives = 205/390 (52%), Gaps = 15/390 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA++ L   +   +    YVKPTP+Q   IP+ +   D+   AQTG+GKTA+F  P+++
Sbjct: 170 TFAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIIS 229

Query: 62  ILEKGRA-------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            + + R        R   P  LIL PTREL+ Q+ +   K+     + V +  GG P   
Sbjct: 230 GIMRSRPPPRSRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVKVVVAYGGAPITQ 289

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++LERG ++L+ TPGR++D   R ++ +  I+ L +DEADRMLDMGF P I+ I   +
Sbjct: 290 QLRELERGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQM 349

Query: 175 PFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                   QT+LFSAT   E+Q+++ +FL +   + V    S+ + I            +
Sbjct: 350 DMPPRGERQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIVQRVEFVLDADKR 409

Query: 231 KCALLQQLLQSQDTMKN----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              +     Q  +         ++F   K+    L + L   GF   +IHG+  Q+ R  
Sbjct: 410 SYLMDLLHAQRANGTHGKQALTLVFVETKRGADALENWLYNNGFPATSIHGDRTQQEREY 469

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G A 
Sbjct: 470 ALRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLAT 529

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
               + +      + +L+++    +   L 
Sbjct: 530 AFFNESNTPLARPLSELMQEANQEVPQWLE 559


>gi|119773890|ref|YP_926630.1| ATP-dependent RNA helicase DbpA [Shewanella amazonensis SB2B]
 gi|119766390|gb|ABL98960.1| ATP-dependent RNA helicase DbpA [Shewanella amazonensis SB2B]
          Length = 467

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 140/368 (38%), Positives = 214/368 (58%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L  +++  +   GY + TPIQ +++P +L   DV G  +TG+GKTA+F L +L  
Sbjct: 12  FSTLKLKTELLENLSSMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNK 71

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+  R R++   TL+L PTRELA QVA       +  +    L +  G+P   Q   LE 
Sbjct: 72  LDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEH 128

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  R +L ++N+ +LV+DEADRML+MGF P +  I +  P  RQTL
Sbjct: 129 GAHIIVGTPGRIVDHLERDRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIARSPRERQTL 188

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  +++Q +++  + NP  ++V T   T E         + +         QLL  
Sbjct: 189 LFSATFPEQIQTIAQQVMYNPVMVKVAT---THEKSTIAQHFYHLEDDGARMQALQLLLL 245

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   ++ ++FCN K+    +   L   GFSV A+HG+++QR R + L  F   +  ++VA
Sbjct: 246 EHKPESAVVFCNTKRETQKVADDLTAAGFSVLALHGDLEQRDRDETLLQFANKSACVLVA 305

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  VFN+ V +  E +IHRIGRTGRAG  G A+T    +D   I  +E
Sbjct: 306 TDVAARGLDIDALDAVFNYHVAHDTEVHIHRIGRTGRAGSKGAAYTFFNDKDGYKIALLE 365

Query: 362 KLIEKKVD 369
           + +E+ + 
Sbjct: 366 EYLERDIQ 373


>gi|281212472|gb|EFA86632.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 728

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 136/379 (35%), Positives = 212/379 (55%), Gaps = 3/379 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   G    ++ ++   GY  PT IQ + +P+ L   D+  IA+TG+GKTASF+ P + 
Sbjct: 254 SFGHYGFDNLLIQSIQKQGYESPTSIQKQAVPIALSGRDLIAIAKTGSGKTASFIWPAIP 313

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       +   P  L + PTRELA Q+    +K+ K Y +  +++ GG+    Q ++L
Sbjct: 314 HIMDQPYLEKGDGPIALFVAPTRELAHQIYLETQKFAKPYKIRTSVIYGGVTKLLQCREL 373

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++L+ TPGR++D        MN +  LV+DEADRM DMGF P +Q+I   +   RQ
Sbjct: 374 KAGCEILVTTPGRLIDMIKLKATKMNRVTYLVLDEADRMFDMGFGPQVQSIVGQIRPDRQ 433

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    +++++ N L +P RI +    S  + I    +   +   K   L+Q+L 
Sbjct: 434 TLLFSATFPPNIEELARNILIDPIRISIGNTGSANQDITQNVIVLSSNGEKWNWLIQRLP 493

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  N IIF + K  V  L  +L K GF    +HG+ DQ+ R  I++ FK+G++ ++
Sbjct: 494 SLVSQG-NVIIFVSTKVAVDELSMNLVKFGFPSEGLHGDKDQQERTMIINKFKDGSVPIL 552

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + +V NFD     +++ HRIGRTGRAG  G A+TL+  +DI     
Sbjct: 553 VATDVAARGLDINLIRNVVNFDPSRDIDSHTHRIGRTGRAGTQGIAYTLITPKDIHFSAE 612

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           + K +E+    +  +L S+
Sbjct: 613 LVKHLEEANQIVPPELISI 631


>gi|225434327|ref|XP_002266157.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297745752|emb|CBI15808.3| unnamed protein product [Vitis vinifera]
          Length = 568

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 125/372 (33%), Positives = 193/372 (51%), Gaps = 9/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+GL   ++  +    Y +PT IQ + +P+ L   D+ G A+TG+GKTA+F +PM+ 
Sbjct: 124 SFTDMGLHQSIMKDITFHEYTRPTFIQAQAMPVALSGRDLLGCAETGSGKTAAFAIPMIQ 183

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
               +    R   P  L+L PTRELA Q+    + + ++ +    A+++GG     Q  +
Sbjct: 184 HCLAQPPVRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLDSFRTAIVVGGTNISEQRSE 243

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G ++++ TPGR + H   G   ++ I  +V+DEADRMLDMGF P I+ +   +P   
Sbjct: 244 LRAGVNIVVATPGRFIHHLQEGNTSLSRISFVVLDEADRMLDMGFEPQIREVMQNLPQKH 303

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK------C 232
           QTLLFSATM  E++ +++ +L NP +++V   S     +                     
Sbjct: 304 QTLLFSATMPMEIETLAQEYLNNPVQVKVGKVSCPTANVSQILEKVSESEKIDGLLALLV 363

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
               Q  +        I+F  +K     +  +L  QG    A+HG   Q  R   L +F+
Sbjct: 364 EEASQAERCGRPFPLTIVFVERKTRCDEVAEALVAQGLRAVALHGGRSQAEREAALRDFR 423

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+D+A+RGLD+  V HV N D+P   ENY+HRIGRTGRAG  G+A +     
Sbjct: 424 NGATNILVATDVASRGLDVTGVAHVINLDLPKAMENYVHRIGRTGRAGSTGQATSFYTDR 483

Query: 353 DIKHIDAIEKLI 364
           D+  +  I K I
Sbjct: 484 DVFLVAHIRKAI 495


>gi|325094386|gb|EGC47696.1| ATP-dependent RNA helicase DBP4 [Ajellomyces capsulatus H88]
          Length = 811

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 117/458 (25%), Positives = 200/458 (43%), Gaps = 18/458 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL LS      +    +   T IQ + IP  L+  D+ G A+TG+GKT +F++P+L +
Sbjct: 51  FSDLPLSEPTADGLSAGHFKSLTDIQARAIPYALKGRDILGAAKTGSGKTLAFLVPLLEL 110

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         L+L PTRELA Q+ +   K G+++  +  L+IGG   + + ++L +
Sbjct: 111 LYRKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHTFSAGLVIGGKGLQEEQERLGK 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +           N+I++LV+DEADR++DMGF   +  I   +P  RQT+
Sbjct: 171 MNILVCTPGRMLQHMDQTAAFDTNHIQLLVLDEADRIMDMGFQSTVDAIIDHLPKERQTM 230

Query: 182 LFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT T ++      +           T +S                 K   L   +  
Sbjct: 231 LFSATQTKKVSDLARLSLRDPEYVSVHETAASATPAKLQQNYIITPLPEKLDTLWSFIRS 290

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S  +         ++   V       + G  +  +HG   Q +R+ I   F       + 
Sbjct: 291 SLKSKIIVFFSSGKQVRFVYESFRHMRPGIPLLHLHGRQKQGARVDITKKFSAAKYACLF 350

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD P V  V   D P  A+ YIHR GRT R  R+G+A   +   +      +
Sbjct: 351 ATDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFLEPSE--EAGML 408

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           ++L +KK+            P+EKI++         N +  ++  F      Y  QK+ I
Sbjct: 409 KRLEQKKI------------PIEKINVRSKKQQSIKNQL--QNMCFKDPSLKYLGQKAFI 454

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
              +S  + + ++     D     +  ++     P+ +
Sbjct: 455 SYVKSIHVQRDKEVFVVKDLPLQEYAASLGLPGAPRIK 492


>gi|227204273|dbj|BAH56988.1| AT3G13920 [Arabidopsis thaliana]
          Length = 398

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 120/356 (33%), Positives = 186/356 (52%), Gaps = 5/356 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F      
Sbjct: 40  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC---SG 96

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L++    +   + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 97  VLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 156

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 157 GVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 216

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 217 VFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDL--YE 274

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 275 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 334

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V ++D + +
Sbjct: 335 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 390


>gi|218890286|ref|YP_002439150.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
 gi|218770509|emb|CAW26274.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
          Length = 446

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 134/373 (35%), Positives = 206/373 (55%), Gaps = 3/373 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ A+    + +PTP+Q   IP  L+ HD+   AQTG+GKTA+F+LP+L  
Sbjct: 7   FSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFLLPLLHR 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L        + R LIL PTRELA Q     E++ +   +   L+ GG  F+ Q  +L + 
Sbjct: 67  LLAEDKPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRKN 126

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +++I TPGR+L+  N G L + +IE+LV+DEADRMLDMGF   +  + +  P  RQTLL
Sbjct: 127 PEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAERQTLL 186

Query: 183 FSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT +   L KV    L+ P+ + +N     +E +    +       K    L Q L S
Sbjct: 187 FSATHSGAGLNKVIAEVLREPQVLRLNQVGELSENVRQQVITADDVAHK--EQLLQWLLS 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +T    I+F N + +   L   L      V  +HG  DQ+ R   +   K+G ++++VA
Sbjct: 245 NETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKILVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + ++E
Sbjct: 305 TDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDWNLMSSVE 364

Query: 362 KLIEKKVDWLNGD 374
           + +++  +  N  
Sbjct: 365 RYLKQNFERRNIK 377


>gi|79313227|ref|NP_001030693.1| EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1);
           ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|332641918|gb|AEE75439.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 415

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 120/356 (33%), Positives = 186/356 (52%), Gaps = 5/356 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F      
Sbjct: 40  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC---SG 96

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L++    +   + L+L PTRELA Q+       G    + V   +GG       + L+ 
Sbjct: 97  VLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 156

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 157 GVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 216

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 217 VFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDL--YE 274

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 275 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 334

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +DL ARG+D+  V  V NFD+P + ENY+HRIGR+GR GR G A   V ++D + +
Sbjct: 335 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 390


>gi|320164395|gb|EFW41294.1| DEAD box ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC
           30864]
          Length = 875

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 138/450 (30%), Positives = 204/450 (45%), Gaps = 52/450 (11%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ ++GL  +++  + D GY +P+PIQ + IP+ LQ  DV GIAQTG+GKTA+FV+P+L 
Sbjct: 440 NWNEIGLPTEILDIITDLGYTEPSPIQRQAIPIGLQNRDVIGIAQTGSGKTAAFVIPLLV 499

Query: 62  ILEKGRARV------RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            + +   R+        P  +I+ PTRELA Q+     K+     L    +IGG+  E Q
Sbjct: 500 WVSRIPRRLREQTVDHGPFAIIMAPTRELAQQIEVETLKFANPMGLRTVCVIGGLSREEQ 559

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G D++I TPGR++D      L++N    +V+DEADRM+DMGF P ++ +    P
Sbjct: 560 AFQLRLGCDIIIATPGRLIDILENRYLVLNRCTYIVLDEADRMIDMGFEPDLKKVLDFFP 619

Query: 176 ----------------FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
                            T  T  F     D + K                    A+    
Sbjct: 620 VSNMRPTDEPDEALDAVTYHTQKFENMDIDSIVKTRYRQTVMFTATMPPLVQRLAQQYMR 679

Query: 220 CF----------------VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
                                              +  ++      IF NQKK    L  
Sbjct: 680 KPAVVTIGSAGQTVDQVTQVVEIMTEANKRKRLLEILGEEHEPPIFIFVNQKKGCDLLAK 739

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
           SLEK G+ V ++HG   Q  R   L  FK G + L+VA+D+A RG+DI DV  V N+D+ 
Sbjct: 740 SLEKLGYRVASLHGGKTQEQRQAALDGFKSGDLDLLVATDVAGRGIDIKDVSLVINYDMS 799

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
              + Y HRIGRTGRAG+ G A T +  ED      +++++             +N P+ 
Sbjct: 800 KTVQEYTHRIGRTGRAGKKGLAITFLTNEDTGVYYELKQIL-------------INSPVS 846

Query: 384 KIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           K      NH    NP P + +  D RK  +
Sbjct: 847 KCPPDLMNHPEAQNP-PGQMSSKDLRKMGF 875


>gi|304311852|ref|YP_003811450.1| Superfamily II DNA and RNA helicases [gamma proteobacterium HdN1]
 gi|301797585|emb|CBL45806.1| Superfamily II DNA and RNA helicases [gamma proteobacterium HdN1]
          Length = 458

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 139/402 (34%), Positives = 215/402 (53%), Gaps = 10/402 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA L L P +V  +   GY + TPIQ + +P +L   DV   ++TG+GKTA+F + +LT
Sbjct: 5   DFASLLLPPHLVENLRGLGYSQMTPIQAQALPPILDGADVIAQSKTGSGKTAAFGIGVLT 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-E 120
            L     R    + L+L PTRELA QVA    +  ++      L + G           E
Sbjct: 65  SL---NPRFFGTQALVLCPTRELADQVAKELRRLARSLQNIKILTLCGGTAIGPQFASLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+  H ++G L +  ++ LV+DEADRMLDMGF   I  I   +P  RQT
Sbjct: 122 HGAHIIVGTPGRVTKHLDKGSLDLQGLKTLVLDEADRMLDMGFYDQIAEIARFIPKRRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT T  ++++S NF  NP  I V +  + +E  ++ +   +    K+       L 
Sbjct: 182 LLFSATYTPAIRELSRNFQSNPVEITVESVHADSEIEQYFYEVDH----KQRRRALSALL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++FCN K+    +  +L  QGF    +HG+++QR R  +L  F   +   +V
Sbjct: 238 KNFKPESAVLFCNTKQLCDEVADALNAQGFYAQTLHGDMEQRDRDLVLLKFSNRSCPYLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+  V N DV    + +IHRIGRTGRAG+ G A +L +  +++  +AI
Sbjct: 298 ATDVAARGLDIKDLAAVVNVDVAFDPDVHIHRIGRTGRAGQKGLALSLCSPAEVQRANAI 357

Query: 361 EKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           E L+ + + W  L     +  P   ++        +++   P
Sbjct: 358 ETLLGRPLHWRDLPPSNDNETPEPPRMVTLNIGGGKRDKLRP 399


>gi|170045492|ref|XP_001850341.1| ATP-dependent RNA helicase DDX54 [Culex quinquefasciatus]
 gi|167868515|gb|EDS31898.1| ATP-dependent RNA helicase DDX54 [Culex quinquefasciatus]
          Length = 793

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 126/433 (29%), Positives = 215/433 (49%), Gaps = 7/433 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  V+  +L  GY  PTPIQ KTIPL+L+  DV  +A+TG+GKT  F++P+   
Sbjct: 40  FQAMGLAMPVLKGILKMGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTGCFLIPLFEK 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++   +    R LIL PTRELA Q     ++ GK  +L   L++GG   + Q   +   
Sbjct: 100 LKQREIKKGA-RALILSPTRELAIQTFKFIKQLGKFMDLKTILVLGGDSMDTQFAAIHTL 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR L       L ++ I+  V DEADR+ +MGF   +    + +P +RQ +L
Sbjct: 159 PDIIVATPGRFLHLCVEMDLKLSAIKYCVFDEADRLFEMGFGEQLTETLARLPSSRQMVL 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + + ++  L NP  I ++  S   ET+            +   LL  + +  
Sbjct: 219 FSATLPKVMVEFAKAGLSNPTLIRLDVESKIPETL-DLRFIYCRPDERYATLLVLIREVI 277

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   + +V  +   L K G     ++  +D  +R    + F    + ++V +
Sbjct: 278 PKNAQIVVFAGTQHHVELISLLLTKSGIPCTHVYSGLDASARKINTAKFTMKKVNVLVVT 337

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIP + +V N   P + + +IHR+GR  RAGR G A+ + + +DI H+  +  
Sbjct: 338 DIAARGLDIPTLDYVVNVHFPGKPKLFIHRVGRCARAGRSGTAYNIFSNDDIAHMIDLHM 397

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF---DRRKKNYSSQKSH 419
            + + +D  +       PP E ++ ++H    +       +T F   +   K Y   +  
Sbjct: 398 FLTRPLDVTDSRNMGRAPP-EAVE-SEHQIVLERIKHIDLATAFRVSNNAYKQYIVTRPA 455

Query: 420 IPLKESEKISKLQ 432
                ++K  + +
Sbjct: 456 ASASSNKKAKRFK 468


>gi|74625309|sp|Q9P6U9|DED1_NEUCR RecName: Full=ATP-dependent RNA helicase ded-1
 gi|7635831|emb|CAB88635.1| probable ATP-dependent RNA helicase DED1 [Neurospora crassa]
          Length = 688

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 133/396 (33%), Positives = 208/396 (52%), Gaps = 21/396 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F++  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L
Sbjct: 194 LTFSNPPLDNHLISNIQLARYNVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPIL 253

Query: 61  TILEK--------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
           +                  GR R   P  LIL PTREL +Q+ D   K+     +   ++
Sbjct: 254 SQSFHTGPSPIPASAAGAYGRQRKAYPTALILAPTRELVSQIYDEARKFAYRSWVRPCVV 313

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 314 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQ 373

Query: 167 IQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 374 IRRIVEGEDMPKVNDRQTLMFSATFPRDIQILARDFLKDYIFLSVGRVGSTSENITQKVE 433

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +        +         +IF   K+   +L   L  Q F   +IHG+  QR
Sbjct: 434 YVEDIDKRSV---LLDILHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQR 490

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 491 ERERALEMFRNGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 550

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A     + +   +  + +L+++    +   L ++
Sbjct: 551 GIATAFFNRGNRGVVRELLELLKEANQEVPAFLETI 586


>gi|67475258|ref|XP_653330.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56470272|gb|EAL47944.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 578

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 137/399 (34%), Positives = 211/399 (52%), Gaps = 19/399 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            F D+ L  ++   +  AG+  P P+Q  TIP+VL + D+   AQTG+GKTA+F+ P   
Sbjct: 132 TFYDIDLGEELDHNIFKAGFYHPMPVQKATIPIVLDKRDLMSCAQTGSGKTAAFLFPIIS 191

Query: 59  -------MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
                  M             P  LIL PTREL  Q+ +   ++ ++  +    + GG  
Sbjct: 192 DILKNPPMPRQSNFSHRVTVFPVALILAPTRELGQQIYEEAVRFTEDTPIRSVCVYGGSD 251

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q +++ +G D+L+ TPGR+L    +  + ++++  L+ DEADRMLDMGF P I+ I 
Sbjct: 252 SYTQIQEMGKGCDILVATPGRLLYFTEKKIVSLSSVRYLIFDEADRMLDMGFEPQIREIC 311

Query: 172 SLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
                      QTL+FSAT   ++Q+++ +FL +   I V    ST E+I+   +    +
Sbjct: 312 EDNEMPPVGKRQTLMFSATFPKQIQRLAADFLDDYVFITVGRAGSTVESIQQIILWVEEE 371

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             K+ A+L  L +     +  +IF   K+    L + L   G+ V +IHG+  Q  R   
Sbjct: 372 I-KQEAILDVLGEFAGKGQKTVIFVETKRGADILENYLYDHGYKVDSIHGDRSQADRDFS 430

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L  FKE  IQL+VA+D+A+RGLDIPD+  V N+D+PN  E+Y+HR+GRTGRAG+ G A T
Sbjct: 431 LKRFKENVIQLLVATDVASRGLDIPDIEVVINYDMPNEIESYVHRVGRTGRAGKKGTAIT 490

Query: 348 LVAKEDIKHIDAIEKLIEKK----VDWLNGDLSSLNPPL 382
            + ++    I  +  L+E+      DWL         P 
Sbjct: 491 FINEKTQNLIPPLVSLLEEAKQTIPDWLEEKAQEYRKPF 529


>gi|169853351|ref|XP_001833356.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Coprinopsis
           cinerea okayama7#130]
 gi|116505566|gb|EAU88461.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Coprinopsis
           cinerea okayama7#130]
          Length = 748

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 134/429 (31%), Positives = 208/429 (48%), Gaps = 36/429 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            + +  +   ++  +   GY +P+PIQ + IP+ LQ  DV GIA+TG+GKTA+FV+PM  
Sbjct: 322 SWEESDIPQVILDCIERIGYKEPSPIQRQAIPIGLQNRDVIGIAETGSGKTAAFVIPMLA 381

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 +     R   P  LIL PTRELA Q+    +K+          ++GG   E Q 
Sbjct: 382 FILTLPIFTDDNRHLGPYALILAPTRELAQQIESETKKFATPLGYKCVSIVGGRAVEEQQ 441

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF------------- 163
             L  GA+++I TPGR+ D   R  L+++    +V+DEADRM+++GF             
Sbjct: 442 FNLREGAEIIIATPGRLKDVLERHVLVLSQCRYIVMDEADRMVNLGFEADLTFILDQLPT 501

Query: 164 -----------IPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS 212
                      +            TR T LFSATM   +++++  +L+ P  I +     
Sbjct: 502 DTMEGEEQGEKMDVDGETMVKKGRTRVTTLFSATMPPAVERLARKYLKKPATITIGEAGR 561

Query: 213 TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             +T+E   V       KK   +  +L S       I+F NQKK    +   L + G+S 
Sbjct: 562 AVDTVEQ-KVEFVNGDEKKKQRMLDILNSGLYAPPIIVFVNQKKTADMVAKDLSRAGWST 620

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
             +H   +Q  R   L   + G   ++VA+DLA RG+D+ DV  V N+ + N  E Y+HR
Sbjct: 621 STLHSGKNQEQREAALQALRTGDADILVATDLAGRGIDVQDVTLVINYQMANTIEAYVHR 680

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T +  +D + +  +++ I K        +S + P L K + AQH  
Sbjct: 681 IGRTGRAGKLGTAITFLTNDDDEVMYDLKQEISK------SPVSKVPPELAKHEAAQHKV 734

Query: 393 ARKNNPIPQ 401
           +R+     +
Sbjct: 735 SREMKRKRE 743


>gi|332374906|gb|AEE62594.1| unknown [Dendroctonus ponderosae]
          Length = 458

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 96/382 (25%), Positives = 163/382 (42%), Gaps = 15/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  L L P ++  V + G+  P+ IQ   +P +L     ++   AQ+GTGKTA+FVL M
Sbjct: 73  TFEALNLKPNLLKGVYEMGFNAPSKIQEMALPTLLADPCQNLIAQAQSGTGKTAAFVLAM 132

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +         P+ L L PT ELA Q  +      K                 +  K+
Sbjct: 133 LSRV---VPDKHYPQVLCLSPTYELAIQTGEVAANMAKFCPEIEMRFAVRGEMLPRGTKI 189

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +       +     +   L      ++ +    +   G       I   +  + Q
Sbjct: 190 AEHIVI-GTPGKVLDWTKQKHLDLKKITVFVLDEADVMIDQQGHQDQCIRIHKDLSASCQ 248

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSAT + E+   +E+ ++NP  I +     + + I   +        K        +
Sbjct: 249 MLFFSATYSQEVMDFAEHIVKNPIVIRLRREEESLDNIGQYYFKCSTADEKY--NALTNI 306

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               ++   I FC  KK    L   +   G +V  + G++    R+ +L  F+EG  +++
Sbjct: 307 YGTLSIGQAINFCRTKKMAEWLSQKMSNDGHAVAILSGDLTVEQRINVLDRFREGKEKVL 366

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           + +++ +RG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  LV +  
Sbjct: 367 ITTNVLSRGIDVEQVTIVVNFDLPVNVEGKADCETYLHRIGRTGRFGKKGLAINLVDSDS 426

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +K +  IE+   +K+ +LN D
Sbjct: 427 SMKILRDIEEHFGRKIQYLNAD 448


>gi|297734151|emb|CBI15398.3| unnamed protein product [Vitis vinifera]
          Length = 492

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 118/389 (30%), Positives = 192/389 (49%), Gaps = 7/389 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+ LGLS   + A+ D G+   T IQ + IP +L   DV G A+TG+GKT +F++P +  
Sbjct: 6   FSALGLSEPTMKAINDMGFGNMTQIQARAIPPLLLGKDVLGAARTGSGKTLAFLIPAVEL 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +             +++ PTRELA Q     +   K +  T+ L+IGG     + ++L +
Sbjct: 66  LYHISFMPRNGTGVVVICPTRELAIQTHAVAKDLLKYHTQTLGLVIGGSARRGEAERLAK 125

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           GA++L+ TPGR +    N    +  N++ L+IDEADR+L+  F   ++ I  L+P  RQT
Sbjct: 126 GANLLVATPGRLLDHLQNTKGFIYKNLKCLIIDEADRILEANFEEEMKQIIKLLPKERQT 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT T +++ ++    Q            T  T E          S K  +L     
Sbjct: 186 ALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFVLLYSFL 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  K  ++F +   +V      L         IHG   Q+ R     +F +    +++
Sbjct: 246 KRNLSKKVMVFFSSCNSVKYHSELLRYIQVDCLDIHGKQKQQKRTSTFFDFCKAEKGILL 305

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHIDA 359
            +D+AARGLDIPDV  +  +D P+  + YIHR+GRT R  G+ G A   +  E+++ +  
Sbjct: 306 CTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGKKGNALLFLIPEELQFLRY 365

Query: 360 IEKLIEKKVDWLNGD---LSSLNPPLEKI 385
           + K  +  V     D   L+++   LEK+
Sbjct: 366 L-KAAKVPVKEYEYDVKKLANVQSHLEKL 393


>gi|242041163|ref|XP_002467976.1| hypothetical protein SORBIDRAFT_01g037410 [Sorghum bicolor]
 gi|241921830|gb|EER94974.1| hypothetical protein SORBIDRAFT_01g037410 [Sorghum bicolor]
          Length = 766

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 144/380 (37%), Positives = 217/380 (57%), Gaps = 4/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D G    ++ A+    Y KPT IQ + +P+VL   D+ GIA+TG+GKTA+FVLPM+ 
Sbjct: 220 NFQDCGFPVPLMNAIAKQAYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIV 279

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       +   P  +I  PTRELA Q+    +K+ K YNL VA + GG+    Q K+L
Sbjct: 280 HIMDQPELEKEEGPIGVICAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKEL 339

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G +V+I TPGR++D      L M     LV+DEADRM D+GF P I++I   +   RQ
Sbjct: 340 KAGCEVVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 399

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  ++++++   L +P R+ V       E I+       +   K   LL++L 
Sbjct: 400 TLLFSATMPYKVERLAREILTDPIRVTVGQVGGANEDIKQVVNVLPSDVEKMPWLLEKLP 459

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              D     ++F ++K  V  +   L ++GF + A+HG+ DQ SRM+ L  FK GT  ++
Sbjct: 460 GMIDDGD-VLVFASKKARVDEIEKELNQRGFRIAALHGDKDQASRMETLQKFKSGTYHVL 518

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIKHID 358
           VA+D+AARGLDI  +  V NFD+    + +IHRIGRTGRAG + G A+TL+ +++ +   
Sbjct: 519 VATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEARFAG 578

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +   +      +  +L  L
Sbjct: 579 ELVHSLIAAGQDVPNELMDL 598


>gi|225455822|ref|XP_002275026.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 580

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 118/389 (30%), Positives = 192/389 (49%), Gaps = 7/389 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F+ LGLS   + A+ D G+   T IQ + IP +L   DV G A+TG+GKT +F++P +  
Sbjct: 94  FSALGLSEPTMKAINDMGFGNMTQIQARAIPPLLLGKDVLGAARTGSGKTLAFLIPAVEL 153

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +             +++ PTRELA Q     +   K +  T+ L+IGG     + ++L +
Sbjct: 154 LYHISFMPRNGTGVVVICPTRELAIQTHAVAKDLLKYHTQTLGLVIGGSARRGEAERLAK 213

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           GA++L+ TPGR +    N    +  N++ L+IDEADR+L+  F   ++ I  L+P  RQT
Sbjct: 214 GANLLVATPGRLLDHLQNTKGFIYKNLKCLIIDEADRILEANFEEEMKQIIKLLPKERQT 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT T +++ ++    Q            T  T E          S K  +L     
Sbjct: 274 ALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFVLLYSFL 333

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  K  ++F +   +V      L         IHG   Q+ R     +F +    +++
Sbjct: 334 KRNLSKKVMVFFSSCNSVKYHSELLRYIQVDCLDIHGKQKQQKRTSTFFDFCKAEKGILL 393

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHIDA 359
            +D+AARGLDIPDV  +  +D P+  + YIHR+GRT R  G+ G A   +  E+++ +  
Sbjct: 394 CTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGKKGNALLFLIPEELQFLRY 453

Query: 360 IEKLIEKKVDWLNGD---LSSLNPPLEKI 385
           + K  +  V     D   L+++   LEK+
Sbjct: 454 L-KAAKVPVKEYEYDVKKLANVQSHLEKL 481


>gi|326482079|gb|EGE06089.1| ATP-dependent RNA helicase DED1 [Trichophyton equinum CBS 127.97]
          Length = 680

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 131/397 (32%), Positives = 204/397 (51%), Gaps = 23/397 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+  
Sbjct: 202 TFTNPPLDDHLISNIKLASYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILS 261

Query: 60  --------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105
                               GR R   P +LIL PTREL +Q+ D   K+     +   +
Sbjct: 262 QAFQNGPSPAPTQQGGQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCV 321

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P
Sbjct: 322 VYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEP 381

Query: 166 YIQNITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
            I+ I            QTL+FSAT   ++Q ++ +FL++   + V    ST+E I    
Sbjct: 382 QIRRIVEGEDMPPVAGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKV 441

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
                   +        +         +IF   K+   +L   L  Q F   AIHG+  Q
Sbjct: 442 EYVEDNDKRSV---LLDILHTHGAGLTLIFVETKRMADSLSEFLINQHFPATAIHGDRTQ 498

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG 
Sbjct: 499 RERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGN 558

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            G +     + +   +  + +L+++    +   L ++
Sbjct: 559 TGISTAFFNRGNRGVVRDLIELLKEAHQEVPSFLENI 595


>gi|327304303|ref|XP_003236843.1| ATP-dependent RNA helicase DED1 [Trichophyton rubrum CBS 118892]
 gi|326459841|gb|EGD85294.1| ATP-dependent RNA helicase DED1 [Trichophyton rubrum CBS 118892]
          Length = 678

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 131/397 (32%), Positives = 204/397 (51%), Gaps = 23/397 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+  
Sbjct: 200 TFTNPPLDDHLISNIKLASYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILS 259

Query: 60  --------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105
                               GR R   P +LIL PTREL +Q+ D   K+     +   +
Sbjct: 260 QAFQNGPSPAPTQQGGQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCV 319

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P
Sbjct: 320 VYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEP 379

Query: 166 YIQNITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
            I+ I            QTL+FSAT   ++Q ++ +FL++   + V    ST+E I    
Sbjct: 380 QIRRIVEGEDMPPVAGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKV 439

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
                   +        +         +IF   K+   +L   L  Q F   AIHG+  Q
Sbjct: 440 EYVEDNDKRSV---LLDILHTHGAGLTLIFVETKRMADSLSEFLINQHFPATAIHGDRTQ 496

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG 
Sbjct: 497 RERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGN 556

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            G +     + +   +  + +L+++    +   L ++
Sbjct: 557 TGISTAFFNRGNRGVVRDLIELLKEAHQEVPSFLENI 593


>gi|320590131|gb|EFX02574.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 713

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 131/396 (33%), Positives = 207/396 (52%), Gaps = 21/396 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L
Sbjct: 218 LTFTNPPLDDHLIHNIELAHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPIL 277

Query: 61  TILE--------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
           +                  GR R   P +LIL PTREL +Q+ +   K+     +   ++
Sbjct: 278 SQAFITGPSVVPNGQAGNFGRQRKAYPTSLILAPTRELVSQIYEESRKFAYRSWVRPCVV 337

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 338 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQ 397

Query: 167 IQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 398 IRRIVEGEDMPGVNERQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVE 457

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +        +         +IF   K+   +L   L  Q F   +IHG+  QR
Sbjct: 458 YVEDNDKRSV---LLDILHTHGAGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQR 514

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 515 ERERALEMFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 574

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G +     + +   +  +  L+++    +   L ++
Sbjct: 575 GLSTAFFNRGNRGVVRELIDLLKEANQEVPAFLETI 610


>gi|299746292|ref|XP_001837876.2| ATP-dependent RNA helicase dbp-4 [Coprinopsis cinerea okayama7#130]
 gi|298406988|gb|EAU83976.2| ATP-dependent RNA helicase dbp-4 [Coprinopsis cinerea okayama7#130]
          Length = 816

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 133/452 (29%), Positives = 219/452 (48%), Gaps = 11/452 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +S +    +  A +VK T IQ K+IPL L+  DV G A+TG+GKT +F++P+L +
Sbjct: 55  FADLPISEQTKRGLKKASFVKMTDIQAKSIPLSLKGKDVLGAARTGSGKTLAFLIPVLEV 114

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         LI+ PTRELA Q+ +     G  ++ +  L+IGG   + +  +L R
Sbjct: 115 LYRRKWGPTDGLGALIISPTRELAVQIFEVLRAIGPFHSFSAGLVIGGKNLKDERDRLSR 174

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +           +N+++LV+DEADR+LDMGF   +  + S +P +RQTL
Sbjct: 175 MNILVATPGRLLQHMDQTVGFDTDNLQMLVLDEADRILDMGFQRTLSALLSHLPKSRQTL 234

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T+ +  ++   L++P+ + V    S+   I       Y        L       
Sbjct: 235 LFSATQTESVSDLARLSLKDPEYVGVKEAGSSGSYIPDSLEQHYVITELDKKLDVLWSFI 294

Query: 242 QDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +++ + +F +  K V  +  +  K    V    +HG   Q +R+ + + F   +  +
Sbjct: 295 KTHLQSKVLVFLSSCKQVRFVFETFCKMHPGVPLLHLHGKQKQTARLAMYTKFTSHSHAV 354

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKHI 357
           M A+D+AARGLD P V  V   D P  AE YIHR+GRT R    GK    +   E+    
Sbjct: 355 MFATDIAARGLDFPAVDWVVQVDAPEDAETYIHRVGRTARYESKGKGLLFLCPSEEEGMT 414

Query: 358 DAIEK--LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            A+ K  L  +K+        ++   L+K+             + Q+      R++ + S
Sbjct: 415 SALTKKGLTVQKIKIRQSKTQNIQLQLQKLCFEDPEIKY----LGQRKGANGNREQAFVS 470

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
               I L++++ I KL     +  A+SLG  G
Sbjct: 471 YLRSIYLQKNKSIFKLDALPVDRYAESLGLPG 502


>gi|302662748|ref|XP_003023025.1| hypothetical protein TRV_02846 [Trichophyton verrucosum HKI 0517]
 gi|291187001|gb|EFE42407.1| hypothetical protein TRV_02846 [Trichophyton verrucosum HKI 0517]
          Length = 677

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 131/397 (32%), Positives = 204/397 (51%), Gaps = 23/397 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+  
Sbjct: 199 TFTNPPLDDHLISNIKLASYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILS 258

Query: 60  --------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105
                               GR R   P +LIL PTREL +Q+ D   K+     +   +
Sbjct: 259 QAFQNGPSPAPTQQGGQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCV 318

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P
Sbjct: 319 VYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEP 378

Query: 166 YIQNITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
            I+ I            QTL+FSAT   ++Q ++ +FL++   + V    ST+E I    
Sbjct: 379 QIRRIVEGEDMPPVAGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKV 438

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
                   +        +         +IF   K+   +L   L  Q F   AIHG+  Q
Sbjct: 439 EYVEDNDKRSV---LLDILHTHGAGLTLIFVETKRMADSLSEFLINQHFPATAIHGDRTQ 495

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG 
Sbjct: 496 RERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGN 555

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            G +     + +   +  + +L+++    +   L ++
Sbjct: 556 TGISTAFFNRGNRGVVRDLIELLKEAHQEVPSFLENI 592


>gi|302501664|ref|XP_003012824.1| hypothetical protein ARB_01075 [Arthroderma benhamiae CBS 112371]
 gi|291176384|gb|EFE32184.1| hypothetical protein ARB_01075 [Arthroderma benhamiae CBS 112371]
          Length = 677

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 131/397 (32%), Positives = 204/397 (51%), Gaps = 23/397 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+  
Sbjct: 199 TFTNPPLDDHLISNIKLASYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILS 258

Query: 60  --------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105
                               GR R   P +LIL PTREL +Q+ D   K+     +   +
Sbjct: 259 QAFQNGPSPAPTQQGGQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCV 318

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P
Sbjct: 319 VYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEP 378

Query: 166 YIQNITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
            I+ I            QTL+FSAT   ++Q ++ +FL++   + V    ST+E I    
Sbjct: 379 QIRRIVEGEDMPPVAGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKV 438

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
                   +        +         +IF   K+   +L   L  Q F   AIHG+  Q
Sbjct: 439 EYVEDNDKRSV---LLDILHTHGAGLTLIFVETKRMADSLSEFLINQHFPATAIHGDRTQ 495

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG 
Sbjct: 496 RERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGN 555

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            G +     + +   +  + +L+++    +   L ++
Sbjct: 556 TGISTAFFNRGNRGVVRDLIELLKEAHQEVPSFLENI 592


>gi|260887674|ref|ZP_05898937.1| ATP-dependent RNA helicase DeaD [Selenomonas sputigena ATCC 35185]
 gi|260862554|gb|EEX77054.1| ATP-dependent RNA helicase DeaD [Selenomonas sputigena ATCC 35185]
          Length = 436

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 131/442 (29%), Positives = 214/442 (48%), Gaps = 14/442 (3%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR 71
           +V A+   G  + T +Q + IP V    D    AQTGTGKT +F+LP+L  ++      +
Sbjct: 2   LVDALARQGIREATLVQEQAIPAVRSGRDAIVQAQTGTGKTLAFLLPLLERIKGNARVAQ 61

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
               L++ PTRELA Q A   +       +  AL+ GG   E Q  KL +   ++I TPG
Sbjct: 62  A---LVVSPTRELAMQTARVAKTLADAVGIRTALVYGGQDIERQKDKLRQKPQLIIATPG 118

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+LDH  R  + ++ +  +V+DEAD ++ +GF+  ++ +   +    Q +LFSATM + +
Sbjct: 119 RLLDHLRRHSVELSQVNKIVLDEADELMRLGFVEDVETMLEALAGDHQLMLFSATMPERI 178

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
           + ++  +++ P+ I V     T   IE                    L ++      ++F
Sbjct: 179 RALTRRYMKEPREITVQPECVTLANIEQ---VIVDTREDTKLDKLCELLNKYQPYLAMVF 235

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           C+ K+ V ++   L  +G+ V  +HG++ Q  R  ++  F+E  +Q++V +D+AARGLDI
Sbjct: 236 CHTKQKVAHVTLELAGRGYLVDELHGDLTQTQRNLVMRRFREAKLQILVVTDIAARGLDI 295

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
             V HVFN+D+P   E YIHRIGRTGRAG  G A T V       +  IE  I+ ++   
Sbjct: 296 EGVTHVFNYDLPQDTEWYIHRIGRTGRAGAKGLAVTFVNAHQYDQLRRIEAGIKARLTKE 355

Query: 372 NGDLSSLNPPLEK----IDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEK 427
             + S       K       A+  +A K    P KS    +R K     +     +    
Sbjct: 356 KSERSGGKNVRRKTAAKAAAAKQENADKERTAPAKSAPPPKRGKAAQRARRVAKKRVGRP 415

Query: 428 ISKLQQDIQENDADSLGFRGNM 449
            ++ +   + N     G R ++
Sbjct: 416 AARSKSGTKTN----AGRRSHL 433


>gi|297811229|ref|XP_002873498.1| hypothetical protein ARALYDRAFT_909079 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297319335|gb|EFH49757.1| hypothetical protein ARALYDRAFT_909079 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 427

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 160/376 (42%), Gaps = 3/376 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D+G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 48  FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V                     F  Y  +  ++V      I       K E  
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECP 167

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L N    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 168 HIVVGTPGRVLALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  I V+  +               +  K        L   
Sbjct: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLNEMEKNR--KLNDLLDA 285

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L +  F    IH  + Q  R+    +FKEG  +++VA+
Sbjct: 286 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVAT 345

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDAIE 361
           DL  RG+DI  V  V N+D+P+ A+ Y+HR+GR GR G  G A T V +  D   ++ ++
Sbjct: 346 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSTVLNQVQ 405

Query: 362 KLIEKKVDWLNGDLSS 377
           +  E  +  L   + +
Sbjct: 406 ERFEVDIKELPEQIDT 421


>gi|119192364|ref|XP_001246788.1| probable ATP-dependent RNA helicase [Coccidioides immitis RS]
 gi|118572554|sp|Q1EA54|HAS1_COCIM RecName: Full=ATP-dependent RNA helicase HAS1
          Length = 604

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 120/408 (29%), Positives = 202/408 (49%), Gaps = 7/408 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS K + A+ + G+   T IQ + IP ++   DV G A+TG+GKT SF++P + 
Sbjct: 125 KFTELNLSEKTLKAIQEMGFETMTEIQRRGIPPLMAGRDVLGAAKTGSGKTLSFLIPAVE 184

Query: 62  ILEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + R    +I+  PTRELA Q+     +   +++ T  ++IGG    A+ +KL 
Sbjct: 185 MLSALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAEKLT 244

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-VPFTR 178
           +G ++LI TPGR +    N    +  N++ LVIDEADR+L++GF   ++ I  +     R
Sbjct: 245 KGVNLLIATPGRLLDHLQNTDGFVFKNLKALVIDEADRILEVGFEDEMRQIVKILPSEDR 304

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT T +++ ++   L+               T+E          S K  LL   
Sbjct: 305 QTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICDSDKRFLLLFS 364

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +    V      L      V  +HG   Q+ R      F       
Sbjct: 365 FLKRNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGT 424

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R A   G++   +   ++  +
Sbjct: 425 LICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGANGKGRSLMFLQPSEVGFL 484

Query: 358 DAIE--KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
             ++  ++   + ++    + ++   LEK+ I Q+ +  K+     +S
Sbjct: 485 KHLKDARVPVVEFEFPAKKIVNVQSQLEKL-IGQNYYLNKSAKDGYRS 531


>gi|150863861|ref|XP_001382482.2| Dead-Box Protein 8, ATP-dependent helicase involved in rRNA
           processing [Scheffersomyces stipitis CBS 6054]
 gi|158514820|sp|A3LP87|DBP8_PICST RecName: Full=ATP-dependent RNA helicase DBP8
 gi|149385117|gb|ABN64453.2| Dead-Box Protein 8, ATP-dependent helicase involved in rRNA
           processing [Scheffersomyces stipitis CBS 6054]
          Length = 445

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 128/434 (29%), Positives = 200/434 (46%), Gaps = 17/434 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLG+S  +  A+       PT IQ   IP +L  HD  G A+TG+GKT +F  PML
Sbjct: 1   MSFEDLGVSRWLSEALAAMKIHTPTAIQSGCIPKILSGHDCIGGAKTGSGKTIAFAAPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T   +          L+L PTRELA Q+A+ F   G + N+ +++++GG  F  Q  +L+
Sbjct: 61  TQWSE---DPFGIFGLVLTPTRELALQIAEQFAALGASMNIKISVVVGGEDFVKQTLELQ 117

Query: 121 RGADVLICTPGRILDHFNRGKL------LMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           +    +I TPGR+ DH                  +L   +       G            
Sbjct: 118 KKPHFVIATPGRLADHILNSGEETISGLRRIKYLVLDEADRLLSNSFGGDLERCFSVLPP 177

Query: 175 PFTRQTLLFSATMTDELQ-----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
              RQT LF+AT+TD ++       ++                   +           Y 
Sbjct: 178 SEKRQTCLFTATVTDAVRALKEKPPAQGKPPVFLHEVETVDQVAIPSTLSIKYVFVPSYV 237

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  L   L   Q      +IF N+      L  +L K  F V ++H  + Q  R   + 
Sbjct: 238 KEAYLNSILRLPQYEKSTAVIFVNRTTTAEVLRRTLRKLEFRVASLHSEMPQSERTNSVQ 297

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G  ++++A+D+A+RGLDIP V  V NFD+P   +++IHR+GRT RAGR G A T++
Sbjct: 298 RFKAGAARILIATDVASRGLDIPSVELVVNFDIPADPDDFIHRVGRTARAGRSGDAVTII 357

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNG--DLSSLNPPLEKIDIAQHNHARKNNPIP-QKSTGF 406
           A++DI  I +IE+ I KK++ L    D S +   L    +A+     + +     +    
Sbjct: 358 AEKDIDRIASIEERINKKMELLEEVTDDSVITDSLTATSVAKRESLMEMDKENFGEKRKI 417

Query: 407 DRRKKNYSSQKSHI 420
           +R+K+   ++K  +
Sbjct: 418 NRKKRGLETEKIRV 431


>gi|254242152|ref|ZP_04935474.1| hypothetical protein PA2G_02881 [Pseudomonas aeruginosa 2192]
 gi|126195530|gb|EAZ59593.1| hypothetical protein PA2G_02881 [Pseudomonas aeruginosa 2192]
          Length = 446

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 133/373 (35%), Positives = 204/373 (54%), Gaps = 3/373 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L  +++ A+    + +PTP+Q   IP  L+ HD+   AQTG+GKTA+F+LP+L  
Sbjct: 7   FSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFLLPLLHR 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L        + R LIL PTRELA Q     E++ +   +   L+ GG  F+ Q  +L + 
Sbjct: 67  LLAEDKPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRKN 126

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +++I TPGR+L+  N G L + +IE+LV+DEADRMLDMGF   +  + +  P   QTLL
Sbjct: 127 PEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAELQTLL 186

Query: 183 FSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT +   L KV    L+ P+ + +N      E +    +       K    L Q L S
Sbjct: 187 FSATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVITADDVAHK--EQLLQWLLS 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +T    I+F N + +   L   L      V  +HG  DQ+ R   +   K+G ++++VA
Sbjct: 245 NETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKILVA 304

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  +  V NFD+P   + Y+HRIGRTGRAG  G A +L+   D   + ++E
Sbjct: 305 TDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDWNLMSSVE 364

Query: 362 KLIEKKVDWLNGD 374
           + +++  +  N  
Sbjct: 365 RYLKQNFERRNIK 377


>gi|255711788|ref|XP_002552177.1| KLTH0B08998p [Lachancea thermotolerans]
 gi|238933555|emb|CAR21739.1| KLTH0B08998p [Lachancea thermotolerans]
          Length = 492

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 117/391 (29%), Positives = 192/391 (49%), Gaps = 8/391 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L LSP  + A+   G+   T +Q +TIP +L   DV G A+TG+GKT +F+LP + 
Sbjct: 29  KFAELNLSPPTMKAIDKMGFTTMTQVQSRTIPPLLAGRDVLGAAKTGSGKTLAFLLPAIE 88

Query: 62  ILEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   + + R    +I + PTRELA Q+    +   + ++ T  ++IGG     +  KL 
Sbjct: 89  MLHSLKFKPRNGTGVIVITPTRELALQIFGVAKTLMEFHSQTFGIVIGGANRRQEADKLA 148

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-VPFTR 178
           +G ++LI TPGR +    N    +  N++ LVIDEADR+L++GF   ++ I  +     R
Sbjct: 149 KGVNLLIATPGRLLDHLQNTKDFVFKNLKALVIDEADRILEIGFEDEMRQIVKILPSEER 208

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT T +++ ++   L+               T +          S K  LL   
Sbjct: 209 QTMLFSATQTTKVEDLARISLRPGPLFINVDSEKQTSTADGLEQGYVVCDSDKRFLLLFS 268

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +   +V      L      V  +HG   Q+ R      F       
Sbjct: 269 FLKRNQKKKIIVFLSSCNSVRYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGT 328

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHI 357
           +V +D+AARGLDIP V  +  FD P+   +YIHR+GRT R  +  GK+   +   ++  +
Sbjct: 329 LVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGSKGKGKSLMFLTPNELGFL 388

Query: 358 DAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
             + K  +  ++        ++++   LEK+
Sbjct: 389 RYL-KAAKVPLNEYEFPSNKIANVQSQLEKL 418


>gi|124506471|ref|XP_001351833.1| RNA helicase-1 [Plasmodium falciparum 3D7]
 gi|23504859|emb|CAD51640.1| RNA helicase-1 [Plasmodium falciparum 3D7]
          Length = 665

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 120/392 (30%), Positives = 201/392 (51%), Gaps = 16/392 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+     ++  +      KPT IQ++ +P +L   D+ GIA TG+GKT  FVLP++ 
Sbjct: 218 NFKDMKFPKAILKGLRKKNIKKPTQIQMQGLPSILLGRDIIGIAFTGSGKTIVFVLPLIM 277

Query: 62  ILEKGRARVR-----MPRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R +      P  LI+ P+RELA Q  +  + + +              +IGGI
Sbjct: 278 KCLEAEIRCKLEEGEGPIGLIICPSRELATQTHNIIKYFCEFLYKDNFPTLRSLCMIGGI 337

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q +++++G  +++ TPGR+ D  N+ ++ +     L  DEADR++D+GF   ++N 
Sbjct: 338 SAYEQGREIQKGIHMIVATPGRLNDMLNKKRMTLEQCRYLCFDEADRLIDLGFEEEVRNT 397

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q+    F ++     +      A       +       +
Sbjct: 398 LDHFSNQRQTLLFSATMPKKIQE----FAKSTLVNPIIINVGRAGAANLDVIQEVEYVKE 453

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L   L   Q T    +IFC  KK+V ++   L  +G +  AIHGN+ Q  R + ++ 
Sbjct: 454 EFKLSYLLEVLQKTGPPVLIFCENKKDVDDVHEYLLLKGVNAVAIHGNLGQSERQEAINL 513

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++V +D+A++GLD P + HV N+D+P   ENY+HRIGRTGR G+ G A T + 
Sbjct: 514 FREGKKDILVGTDVASKGLDFPSIEHVINYDMPKDIENYVHRIGRTGRCGKTGIATTFIN 573

Query: 351 K-EDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           K ++   +  ++ L+ +    +   L  L+  
Sbjct: 574 KNQEEAILLDLKALLIEAKQKIPPFLEMLDSK 605


>gi|313221766|emb|CBY38854.1| unnamed protein product [Oikopleura dioica]
 gi|313233364|emb|CBY24478.1| unnamed protein product [Oikopleura dioica]
          Length = 422

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 96/393 (24%), Positives = 172/393 (43%), Gaps = 13/393 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 42  FRDFLLKPELLRAIVDCGFEHPSQVQNECIPQAVLGMDVLCQAKSGMGKTAVFVLATLQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE     V +             ++  + F KY  +  + V      I  + +  K    
Sbjct: 102 LEPVDGNVSVIVMCHTRELAFQISKEYERFSKYMDSMKVAVFFGGMPIEKDKKVLKENCP 161

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L N    ++ +    +  +     +Q I    P  +Q ++
Sbjct: 162 HIVVGTPGRILGLIRSKALSLKNVKHFVLDECDKMLDALDMRRDVQEIFRQTPHEKQVMM 221

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  + ++  +               +  K   L        
Sbjct: 222 FSATLSKEVRPVCKKFMQDPMEVFIDDEAKLTLHGLQQHYVKIKENEKNRKLFDL--LDA 279

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L++Q F    IH  ++Q  R++    FK    +++VA+
Sbjct: 280 LEFNQVVIFVKSVQRCIALSTLLKEQNFPAVDIHRAMNQEERLQRYQLFKNFQRRILVAT 339

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A + V+ +ED K   +++
Sbjct: 340 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAISFVSDEEDAKTSQSVQ 399

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
              E K+  L           E+IDI+ +   R
Sbjct: 400 DRFEVKITELP----------EEIDISTYIEGR 422


>gi|297807481|ref|XP_002871624.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317461|gb|EFH47883.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 713

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 126/361 (34%), Positives = 199/361 (55%), Gaps = 2/361 (0%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-PRTLI 77
           AG+  P+PIQ ++ P+ +Q  D+  IA+TG+GKT  +++P    L++     RM P  L+
Sbjct: 247 AGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILV 306

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           L PTRELA Q+     K+GK+  ++ A L GG P   Q K++ERG D+++ TPGR+ D  
Sbjct: 307 LSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDIL 366

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
              ++ ++ +  LV+DEADRMLDMGF P I+ I + VP  RQTL+++AT   E++K++ +
Sbjct: 367 EMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAAD 426

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
            L NP ++ +                       +     + +       + II     K 
Sbjct: 427 LLVNPAQVNIGNVDELVANKSITQTIEVLAP-MEKHSRLEQILRSQEPGSKIIIFCSTKR 485

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
           + +       + F   AIHG+  Q  R  +L+ F+ G   ++VA+D+AARGLD+ D+  V
Sbjct: 486 MCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVV 545

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
            N+D PN  E+Y+HRIGRTGRAG  G A+T    +D KH   + K++E     +   +  
Sbjct: 546 VNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVRE 605

Query: 378 L 378
           +
Sbjct: 606 M 606


>gi|238759674|ref|ZP_04620834.1| ATP-dependent RNA helicase srmB [Yersinia aldovae ATCC 35236]
 gi|238702102|gb|EEP94659.1| ATP-dependent RNA helicase srmB [Yersinia aldovae ATCC 35236]
          Length = 441

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 140/447 (31%), Positives = 230/447 (51%), Gaps = 14/447 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP + 
Sbjct: 5   NFSELDLDERLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K+  L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I +   + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT   + +++ +E  L  P  +E +      + I   +    +   K        L
Sbjct: 185 LLFSATLEGEAIREFAERILNEPVELEADPSRRERKKILQWYYRADSIEHKTAL--LVHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  ++  IIF   ++ V  L   L + G +   + G + Q  R + +    +G + ++
Sbjct: 243 LKQPEVQKSIIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI D+ HVFNFD+P  ++ Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDIASRGLDIDDISHVFNFDLPLTSDVYLHRIGRTGRAGRKGVAISLVEAHDHLLLGK 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           I + + + +      +  L P       ++    +      +K     +  K  S +K  
Sbjct: 363 IGRYLNEPLK--PRVIDELRP------TSKAPSEKATGKPSKKVLAKRKELKEASKEKVK 414

Query: 420 IPL--KESEKISKLQQDIQENDADSLG 444
           + +  ++++ + K ++   + D  + G
Sbjct: 415 VKVRHRDAKNVGKRRKPKDKPDTKTTG 441


>gi|238762788|ref|ZP_04623757.1| ATP-dependent RNA helicase srmB [Yersinia kristensenii ATCC 33638]
 gi|238699093|gb|EEP91841.1| ATP-dependent RNA helicase srmB [Yersinia kristensenii ATCC 33638]
          Length = 441

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 143/448 (31%), Positives = 233/448 (52%), Gaps = 16/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP + 
Sbjct: 5   TFSELDLDERLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD   +  K+  L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I++   + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT   + +++ +E  L  P  +E +      + I+  +        K        L
Sbjct: 185 LLFSATLEGEAIREFAERILTEPVELEADPSRRERKKIQQWYYRADDIEHKTAL--LVHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  ++  IIF   ++ V  L   L + G +   + G + Q  R + +    +G + ++
Sbjct: 243 LKQPEVQKSIIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDIASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHDHLLLGR 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK-KNYSSQKS 418
           I + +++ +      +  L P            + K+   P K     R++ K    +K+
Sbjct: 363 IGRYLKEPLK--PRVIDELRP-------TSKAPSEKSTGKPSKKVLAKRKELKEAGKEKA 413

Query: 419 HIPL--KESEKISKLQQDIQENDADSLG 444
            + +  ++++ + K ++   + +  S G
Sbjct: 414 KVKVRHRDAKNVGKRRKPKDKPETKSAG 441


>gi|255940232|ref|XP_002560885.1| Pc16g05440 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585508|emb|CAP93214.1| Pc16g05440 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1162

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 127/434 (29%), Positives = 209/434 (48%), Gaps = 12/434 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL  + +  V   G+   T IQ + IP ++   DV G+A+TG+GKT +F++PM  
Sbjct: 521 KWSQCGLGVQTLDVVHKLGWESLTSIQAQAIPTIMSGRDVIGVAKTGSGKTGAFLVPMFR 580

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++  R       P ++IL PTRELA Q+  + + + +   L      GG P + Q  +L
Sbjct: 581 HIKDQRPLASTDGPISMILAPTRELATQIHKDCKPFLRALGLRAVCAYGGAPIKDQIAEL 640

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CT GR++D         L +  I  +V+DE DRM DMGF P +  I + +  
Sbjct: 641 KRGAEIIVCTAGRLIDLLAANQGRVLNLRRITYVVLDEGDRMFDMGFGPQVVKIMASIRP 700

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT    ++ ++   L +P  I V   S  A  I                L  
Sbjct: 701 DRQTVLFSATFPKSMEALARKTLNDPVEITVGGKSVVAREITQIVEVRNNDQKFFRLLEL 760

Query: 237 Q---LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                    +     +IF ++++   +L   L  +G+   +IHG  DQ  R   +  FK 
Sbjct: 761 LGNLYEDDANEDYRTLIFVDRQEAADDLLKQLMYKGYPCMSIHGGKDQIDRDSTIQEFKA 820

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T V +E 
Sbjct: 821 GVFPILVATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFVTEEQ 880

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            ++   I K +++    +   L  L     +    +    ++ N       G    + N 
Sbjct: 881 DRYALDIAKALKQSGQEVPEPLQKLVDGFNE----KVKAGKEKNFSRHGFGGKGLDRLNM 936

Query: 414 SSQKSHIPLKESEK 427
             + + +  +++ K
Sbjct: 937 ERETARLRERKAYK 950


>gi|84996425|ref|XP_952934.1| DEAD-family helicase [Theileria annulata strain Ankara]
 gi|65303931|emb|CAI76310.1| DEAD-family helicase, putative [Theileria annulata]
          Length = 757

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 120/418 (28%), Positives = 196/418 (46%), Gaps = 25/418 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A+  L  +++ A+  AGY+KPTPIQ++ IP+ L+  D+ GIA TG+GKTA+FVLPMLT
Sbjct: 340 TWAESPLPWELLEAIKKAGYIKPTPIQMQAIPIALEMRDLIGIAVTGSGKTAAFVLPMLT 399

Query: 62  ILE-----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            ++          +  P  LIL P+RELA Q+ D   K+    +     ++GG   E+Q 
Sbjct: 400 YVKKLPPLDDETSLDGPYALILAPSRELALQIYDETVKFSAFCSCRSVAVVGGRNAESQA 459

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L +G +++I TPGR+ D  +R   +++    +++DEADRM+DMGF   ++ I   +P 
Sbjct: 460 FELRKGCEIIIGTPGRVKDCLDRAYTVLSQCNYVILDEADRMIDMGFEDVLKYILDCIPS 519

Query: 177 T--------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
           T                     +    +   +  +    E   +   R            
Sbjct: 520 TNLKDRDESSALEQELSTKAGHRRYRITHMFSATMPPAVEKLTKRYLRAPAFISIGDVGG 579

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
            +           +           +      IIF N KKN   +   + K G+   ++H
Sbjct: 580 GKTSITQQLDFVQESKKTRHLEETLETLEPPIIIFVNLKKNTDVITKHITKIGYRAVSLH 639

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G   Q SR   L+ FK G   ++VA+D+  RGLD+  +  V N+D+P   + Y HRIGRT
Sbjct: 640 GGKTQESREDALNKFKSGAYDILVATDVVGRGLDVEGIKVVINYDMPKDIQTYTHRIGRT 699

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           GRAG  G + + V   D+     +++L+    + +  +LS       K +    N  +
Sbjct: 700 GRAGLKGLSISFVTDADVDLFYDLKQLLISTDNIVPLELSQHPASKVKPNQPHRNITK 757


>gi|327404500|ref|YP_004345338.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327320008|gb|AEA44500.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 407

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 129/388 (33%), Positives = 213/388 (54%), Gaps = 5/388 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+D  +S ++   +   G+ +PT IQ K I  +L   DV GIAQTGTGKTA+F +P++
Sbjct: 1   MRFSDYPISDEIKKQLEVLGFKRPTDIQFKAISPILNGEDVFGIAQTGTGKTAAFAIPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   R + + PR ++L PTRELA Q+ D FE  G   N+ +  ++GG+  + Q ++L+
Sbjct: 61  HKLSTSRPKSKSPRCIVLAPTRELAEQIKDAFESIGVGSNIRITAILGGLEQDKQIQELK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR+ D  ++G L +++I+ LV+DEADRMLD+GF   ++ I  L P   + 
Sbjct: 121 RGTDVIVATPGRVFDLRSQGHLSLDSIQFLVLDEADRMLDLGFAHDMKAIHKLSPQRNRQ 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +F +   D+  K     L         +P             T     K+     + + 
Sbjct: 181 TMFFSATIDKKIKALAYDLVRDAIRIQISPDDPVSKNVEHGAITVEMDDKRF--FLENII 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      ++F   K     +  ++E+ G    A+HG I+Q+ R  +L  FK G  ++++
Sbjct: 239 KEYEEFKYVVFVRTKVRCERVVAAMERVGIHSEALHGGIEQKDRFAVLERFKSGENKILI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+DI  V +V N+D+P++ E Y+HRIGRTGR    G+A +  + E+ K ++ I
Sbjct: 299 TTDVAARGIDIQGVDYVINYDLPDQPEQYVHRIGRTGRGENKGQALSFCSSEEEKMLEEI 358

Query: 361 EKLIE---KKVDWLNGDLSSLNPPLEKI 385
           E  +    +K++   GD S++    E +
Sbjct: 359 ELYLGYDIEKIEISKGDYSAILRDTEDL 386


>gi|195591171|ref|XP_002085316.1| GD12376 [Drosophila simulans]
 gi|194197325|gb|EDX10901.1| GD12376 [Drosophila simulans]
          Length = 592

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 121/453 (26%), Positives = 205/453 (45%), Gaps = 17/453 (3%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
           D  + P++   +L   + +PTPIQ++ +P++LQR  +   A TG+GKT +F+ P++  L 
Sbjct: 123 DFKMLPRLQQNLLSRNFDRPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIIDGLR 182

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNKKLER 121
               +    R L+L PTRELA Q+     +  +   L    +              K   
Sbjct: 183 V--HKTTGLRALVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECKQRY 240

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----ITSLVPFT 177
              V      R L       L ++++E  V+DEADR+++ G   + +       +    T
Sbjct: 241 DILVSTPNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAACSHPT 300

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +    FSAT T  + K +   L+N  RI +   +S  ET++   +   ++  K  A+   
Sbjct: 301 KCVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGKLVAMRDL 360

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + Q        ++F   K+    L   L   G +V  IH    Q  R   +  F+EG+I 
Sbjct: 361 VRQGLQPP--VLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVRAFREGSIW 418

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ ++L  RG+D   V  V N+D P    +YIHRIGRTGRAGR G+A T   +ED  ++
Sbjct: 419 VLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQEDTSNL 478

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ-HNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            +I  +I+       G +      ++K+  ++    A+K       ST      K     
Sbjct: 479 RSIALIIKNS----GGTVPEYMLQMKKVRKSEAKMRAKKPLDREDISTKIRPETKGDDKH 534

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNM 449
           KS   LK+ EK  K+ ++ + N+ D    +  +
Sbjct: 535 KS-AKLKKVEKTDKILKNRKGNEKDLKTKQKKL 566


>gi|221052953|ref|XP_002257851.1| RNA helicase [Plasmodium knowlesi strain H]
 gi|193807683|emb|CAQ38387.1| RNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 546

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 118/372 (31%), Positives = 199/372 (53%), Gaps = 8/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL +  +++ ++ + G+ KPT IQ K +P   Q+ D+ G+++TG+GKTA F++P+L 
Sbjct: 140 TFRDLNICEEILQSIDELGWKKPTAIQRKMLPCAFQQRDIIGLSETGSGKTACFIIPILQ 199

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN-KKLE 120
            L +   + +    L++ PTREL  Q+A +F+  G N  + +  + GG+    Q+    +
Sbjct: 200 ELRQ---KRQSFFALVISPTRELCIQIAQHFQALGSNLLVNICTIFGGVDIVTQSLNLAK 256

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      +    N     + N++ LV DEAD++L + F   I  +  ++P  R T
Sbjct: 257 KPNIIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSLDFEASINKLLLILPQKRTT 316

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT  + K+ +  L+NP +IEV+   STA T+   ++       K        L 
Sbjct: 317 FLFSATMTKSVAKLKKASLKNPIKIEVSNKYSTASTLIENYIFIPL---KYKYTYLCSLC 373

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              + +  IIF N       +       G     +HG + Q  R+  L++FK     +++
Sbjct: 374 FHFSSRCIIIFANTCATAQKINFFCRNLGLKSICLHGKLTQNQRLSSLNSFKSKRYNILI 433

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++ + ARGLD+ D+  V NFD+    + YIHR+GRT RAGR GK+ T V + D+++  AI
Sbjct: 434 STQVGARGLDLKDIKIVINFDLC-SCKEYIHRVGRTARAGRTGKSITFVTQYDVENFLAI 492

Query: 361 EKLIEKKVDWLN 372
           EK++ KK+D  N
Sbjct: 493 EKMLNKKIDKFN 504


>gi|256811339|ref|YP_003128708.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens
           AG86]
 gi|256794539|gb|ACV25208.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens
           AG86]
          Length = 362

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 211/365 (57%), Gaps = 14/365 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPM 59
           M F++L LS  V+ A+ + G+ KPT IQ+K +PL L +  ++   A+TG+GKTASF +P+
Sbjct: 1   MSFSELNLSENVLNAIKNKGFEKPTDIQMKVVPLFLNESCNIVAQARTGSGKTASFAIPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + +++           +IL PTRELA QVAD  +    N NL +  + GG     Q  K 
Sbjct: 61  IELID----EDSGIEAIILTPTRELAIQVADEIDSLKGNKNLKITKVYGGKAIHPQI-KA 115

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            + A++++ TPGR+LDH NRG L + N++  ++DEAD ML+MGFI  ++ I +     ++
Sbjct: 116 LKKANIVVGTPGRVLDHINRGTLNLKNVKYFILDEADEMLNMGFIEDVEKILNACNKNKR 175

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  E+  +++ +        +         I      +Y + ++         
Sbjct: 176 ILLFSATMPKEILNLAKKY--------MGDYEFVKAKINANIEQSYIEINENERFETLCR 227

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +D    G++FC  KK+  +L + L   GF   AIHG+++Q  R K++  FK+  I+++
Sbjct: 228 ILKDREFYGLVFCKTKKDTKDLANMLRDIGFKAGAIHGDLNQSQREKVIRLFKQKKIKIL 287

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+ +RG+D+ D+  V N+ +P   E+Y+HRIGRTGRAG+ G A +++ + + + +  
Sbjct: 288 IATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGMAISIINRREYRKLKH 347

Query: 360 IEKLI 364
           IE+ +
Sbjct: 348 IERKM 352


>gi|303312885|ref|XP_003066454.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240106116|gb|EER24309.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|320031627|gb|EFW13587.1| ATP-dependent RNA helicase HAS1 [Coccidioides posadasii str.
           Silveira]
          Length = 604

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 120/408 (29%), Positives = 202/408 (49%), Gaps = 7/408 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS K + A+ + G+   T IQ + IP ++   DV G A+TG+GKT SF++P + 
Sbjct: 125 KFTELNLSEKTLKAIQEMGFETMTEIQRRGIPPLMAGRDVLGAAKTGSGKTLSFLIPAVE 184

Query: 62  ILEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + R    +I+  PTRELA Q+     +   +++ T  ++IGG    A+ +KL 
Sbjct: 185 MLSALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAEKLT 244

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-VPFTR 178
           +G ++LI TPGR +    N    +  N++ LVIDEADR+L++GF   ++ I  +     R
Sbjct: 245 KGVNLLIATPGRLLDHLQNTEGFVFKNLKALVIDEADRILEVGFEDEMRQIVKILPSEDR 304

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT T +++ ++   L+               T+E          S K  LL   
Sbjct: 305 QTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICDSDKRFLLLFS 364

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +    V      L      V  +HG   Q+ R      F       
Sbjct: 365 FLKRNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGT 424

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R A   G++   +   ++  +
Sbjct: 425 LICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGANGKGRSLMFLQPSEVGFL 484

Query: 358 DAIE--KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
             ++  ++   + ++    + ++   LEK+ I Q+ +  K+     +S
Sbjct: 485 KHLKDARVPVVEFEFPAKKIVNVQSQLEKL-IGQNYYLNKSAKDGYRS 531


>gi|257205736|emb|CAX82519.1| belle [Schistosoma japonicum]
          Length = 939

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 136/390 (34%), Positives = 212/390 (54%), Gaps = 16/390 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   +   V  A Y+ PTP+Q   +P++  + D+   AQTG+GKTA+F+LP+L 
Sbjct: 159 SFNDVELHQVIKENVTRAQYIHPTPVQKYALPIISAKRDLMACAQTGSGKTAAFLLPILN 218

Query: 62  ILEKGRAR----------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
           +L + +            +  P  LIL PTREL++Q+ D   K+    N+   ++ GG  
Sbjct: 219 MLFEDKHCENPEASTLNCIAYPVALILAPTRELSSQIYDEARKFSYRSNIKPCVVYGGAS 278

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
             AQ ++L  G ++L+ TPGR++D  +RGK+ +  I   V+DEADRMLDMGF P I+ I 
Sbjct: 279 ILAQIRELSHGCNLLVATPGRLVDMVSRGKVSLEQIRFFVLDEADRMLDMGFEPQIRRIV 338

Query: 172 SLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
                      QTL+FSAT   E+Q ++ +FL +   + V    ST E I          
Sbjct: 339 EQHGMPPAGKRQTLMFSATFPKEIQTLARDFLHSYIFLAVGRVGSTNENIIQEV--LNVA 396

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
              K  +L +LLQ +D     ++F   K+    L   L +  F V +IHG+  Q  R   
Sbjct: 397 DKDKPDMLVRLLQGKDPDGLALVFVETKRGADILAKFLCQLNFPVASIHGDRPQTEREHA 456

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L +F+ G   +++A+ +AARGLDIP+V HV NFD+P+  E Y+HRIGRTGR G+ G A +
Sbjct: 457 LQSFRSGRTPILIATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRMGQSGSATS 516

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
             ++++   +  + +L+ +    +   L +
Sbjct: 517 FFSEKNQNVVRDLVELLRESKQPVPPWLEA 546


>gi|45382659|ref|NP_990039.1| probable ATP-dependent RNA helicase DDX4 [Gallus gallus]
 gi|9967268|dbj|BAB12337.1| Cvh [Gallus gallus]
          Length = 662

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 120/380 (31%), Positives = 203/380 (53%), Gaps = 12/380 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +   +  +   +   GY K TP+Q  +IP++    D+   AQTG+GKTA+F+LP++  
Sbjct: 238 FEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDR 297

Query: 63  LEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + K        + + P+ +I+ PTREL  Q+     K+     +   ++ GG       +
Sbjct: 298 MMKDGVTASFPKQQDPQCIIVAPTRELINQIFLEARKFVYGTCIRPVVIYGGTQTGHSIR 357

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NITSL 173
           ++ +G ++L  TPGR+LD   +GK+ +  ++ LV+DEADRMLDMGF   ++         
Sbjct: 358 QIMQGCNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRMLDMGFGLDMKKLISYPEMP 417

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
               RQTL+FSAT  +E+Q+++  FL+      V   +  A +     +    + SK+  
Sbjct: 418 SKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNTCGACSDVQQNILQVPRLSKRDK 477

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L++  +      +  ++F + KK    L   L ++     +IHG+ +QR R   L +F+ 
Sbjct: 478 LIE--ILQSTGGERTMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQREREIALRDFRS 535

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE- 352
           G  Q++VA+ +A+RGLDI +V HV NFD+PN  E+Y+HRIGRTGR G  GKA +    + 
Sbjct: 536 GKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCGNTGKAVSFFDDQS 595

Query: 353 DIKHIDAIEKLIEKKVDWLN 372
           D   + ++ K++ +      
Sbjct: 596 DGHLVQSLLKVLSRTQQEFQ 615


>gi|322701372|gb|EFY93122.1| ATP-dependent RNA helicase [Metarhizium acridum CQMa 102]
          Length = 434

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 150/375 (40%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q   IP  L   D+   A++G GKTA FVL  L  
Sbjct: 52  FRDFLLKPELLRAIGDCGFEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQ 111

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
           +E     V +                 + F KY       +           E    K  
Sbjct: 112 VEPVNGEVSVVVMCHTRELAYQIRDEYNRFSKYMPDIKTGVFFGGTPIKTDMETLKNKDT 171

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++           ++   L +    ++ +    +        +Q++    P  +Q 
Sbjct: 172 CPHIIVGTPGRLKALVRDKALRLGSVRIFVLDECDKMLDQPDMRTDVQDVFRATPTQKQV 231

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT+ +E++ +   F+QNP    V+  +         +     +  K   L +    
Sbjct: 232 MMFSATLANEIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIKLEEKEKNRKLNEL--L 289

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      IIF         L   L +  F   A+H  + Q  R+K    FKE   ++ V
Sbjct: 290 DELQFNQVIIFVKSTIRATELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFKKRICV 349

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+  RG+DI  +    N+D+P  A +Y+HR+GR GR G  G A + V+ + D + +  
Sbjct: 350 ATDVFGRGIDIERINLAINYDLPADASSYLHRVGRAGRFGTKGLAISFVSSDQDQEVLKE 409

Query: 360 IEKLIEKKVDWLNGD 374
           IEK  E  +     +
Sbjct: 410 IEKRFEVALPEFPKE 424


>gi|315043240|ref|XP_003170996.1| ATP-dependent RNA helicase drs1 [Arthroderma gypseum CBS 118893]
 gi|311344785|gb|EFR03988.1| ATP-dependent RNA helicase drs1 [Arthroderma gypseum CBS 118893]
          Length = 814

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 133/359 (37%), Positives = 193/359 (53%), Gaps = 1/359 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L 
Sbjct: 300 SFQNLSLSRPILRGLASVGFSAPTPIQKKTIPVALLGKDVVGGAVTGSGKTGAFIVPILE 359

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++
Sbjct: 360 RLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKK 419

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 420 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKSRQT 479

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+ + K+    L  P R+ V++   T  T+   FV        K       L 
Sbjct: 480 MLFSATMTNSVDKLIRVGLNKPVRLMVDSKKQTVGTLVQEFVRLRPGREDKRLGYLMFLC 539

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F  QKK    +       G     +HG++ Q  R+K + +F++  +  ++
Sbjct: 540 KTVYTNRVIVFFRQKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVEDFRDAKVSYLL 599

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K +  
Sbjct: 600 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKE 658


>gi|163839948|ref|YP_001624353.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
 gi|162953424|gb|ABY22939.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
          Length = 565

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 144/452 (31%), Positives = 230/452 (50%), Gaps = 25/452 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  +   +V A+ DAG V P PIQ  T+P+ L  HD+ G A+TGTGKT  F +P+L 
Sbjct: 37  TFADFNVRADIVEALADAGIVHPFPIQSMTLPVALGGHDIIGQAKTGTGKTLGFGVPVLQ 96

Query: 62  ILEKGRARVRM-------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +   +            P+ LI+ PTRELA QVA++ +   +     +  + GG  FE 
Sbjct: 97  RVTAPKDEGYDALPVPGAPQALIVVPTRELAVQVANDLQTAARKRGARITTIYGGRAFEP 156

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L +G +V++ TPGR++D F +  L + N+ ++V+DEAD MLD+GF+P ++ + +  
Sbjct: 157 QIESLTKGVEVVVGTPGRLIDLFKQRHLNLKNVRMVVLDEADEMLDLGFLPDVETLMAAT 216

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQT+LFSATM   +  ++  ++  P  I    P     T        Y  +S     
Sbjct: 217 PAVRQTMLFSATMPGPIVAMARRYMTQPTHIRAADPDDEGLTKRDIRQLVYRAHSMDKIE 276

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +         IIF   K+    +   L ++GF+  AIHG++ Q +R + L  F+  
Sbjct: 277 VVARILQARGRGRTIIFTKTKRTAAKVAEELAERGFASAAIHGDLGQGAREQALRAFRNN 336

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+      + Y+HR+GRTGRAG  G A T V  +D+
Sbjct: 337 KVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWDDM 396

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                I K +    D           P+E    + H ++  +  IP+ + G     +   
Sbjct: 397 PGWGLINKTLGLPFDE----------PVETYSSSPHLYS--DLDIPEGTKG-----RLPK 439

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGFR 446
           SQ++H  L  +E +  L +  + +   S G  
Sbjct: 440 SQRTHAGLN-AEVLEDLGETGKRHGGQSTGSG 470


>gi|74216552|dbj|BAE37719.1| unnamed protein product [Mus musculus]
          Length = 427

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 165/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLEPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY  +  ++V      I  +    K    
Sbjct: 106 IEPVNGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    +R   L N    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 166 HVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRFEVNVAELPEEID 418


>gi|3122189|sp|Q26696|DDX17_TRYBB RecName: Full=Putative DEAD-box RNA helicase HEL64
 gi|1166504|gb|AAC46964.1| HEL64 [Trypanosoma brucei]
          Length = 568

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 119/427 (27%), Positives = 211/427 (49%), Gaps = 19/427 (4%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP- 58
            F  L   + P ++  +    +  PTP+Q ++ P++L   D+ G+A+TG+GKT  F++P 
Sbjct: 101 SFDHLCGIVPPYLLKKLTAQNFTAPTPVQAQSWPVLLSGRDLVGVAKTGSGKTLGFMVPA 160

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  I  +   R      +++       AQ  +   K     ++    + GG P   Q   
Sbjct: 161 LAHIAVQEPLRSGDGPMVVVLAPTRELAQQIEEETKKVIPGDVYCGCVYGGAPKGPQLGL 220

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG  +L+ TPGR++D  +  ++ ++ +  LV+DEADRMLDMGF P ++ I   +   R
Sbjct: 221 LRRGVHILVATPGRLIDFLDIKRINLHRVTYLVLDEADRMLDMGFEPQVRKICGQIRPDR 280

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT++FSAT   E+Q+++  F +   RI V +    A            +++K+     + 
Sbjct: 281 QTVMFSATWPREIQRLAAEFQKQWIRISVGSTELQANKDVTQRFILTQEFAKQD--ELRK 338

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +   +  ++FC  K+    L   L + G+   AIHG+ +QR R  IL+ F++     
Sbjct: 339 LMQEHREERVLVFCKMKRTADELERQLRRWGYDAMAIHGDKEQRQREFILARFRKDPRLC 398

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH-- 356
           +VA+D+AARGLDI  +  V N+D P + ++Y+HRIGRTGRAG  G+   L+ K++ +   
Sbjct: 399 LVATDVAARGLDIKQLETVINYDFPMQIDDYVHRIGRTGRAGGEGRCVYLITKKEAQITP 458

Query: 357 --IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
             +  +  ++E+    +   +   N    +  + ++          +   GF R +    
Sbjct: 459 SVLKELIGILERAQQEIPDWMIEWNAQQPRYQVKRN----------RGMNGFGRHQSAPF 508

Query: 415 SQKSHIP 421
            +  H P
Sbjct: 509 LRNGHRP 515


>gi|327554931|gb|AEB00819.1| vasa-like protein [Marsupenaeus japonicus]
          Length = 698

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 131/426 (30%), Positives = 211/426 (49%), Gaps = 12/426 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P ++  ++ AGY  PTP+Q  TIP V+   D+ G AQTG+GKTA+F+LPML 
Sbjct: 257 SFQAMDLRPLLLENIVKAGYGCPTPVQKYTIPNVMNGRDIMGCAQTGSGKTAAFLLPMLH 316

Query: 62  ILEKGRARVR------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +               P  L++ PTRELA Q+     K+         +  GG     Q
Sbjct: 317 HILDNNCPSHAFEEPAQPTGLVICPTRELAIQIMREARKFSHGSVAKCCVAYGGAAGFHQ 376

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF----IPYIQNIT 171
            K +  G  +L+ TPGR+LD   +GK++ +N++ LV+DEADRMLDMGF       I +IT
Sbjct: 377 LKTMHNGCHILVATPGRLLDFVEKGKVVFSNLKYLVLDEADRMLDMGFLSSIKTVINHIT 436

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 R TL+FSAT  +E+Q+++  FL N   + V +  +    ++   ++      K 
Sbjct: 437 MTPTEERITLMFSATFPNEIQELASVFLNNYLFVVVGSVGAANTDVKQEVLSVSKFDKKA 496

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSN 290
             +        ++    I+   ++K V +   S   ++ F    +HG+  Q  R + L+ 
Sbjct: 497 KLVEMCEEILINSEDEKILVFVEQKRVADFVGSYLCEKKFRATTMHGDRFQAQREQALAA 556

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI  +G V N+D+P   + Y+HRIGRTGR G  G + +   
Sbjct: 557 FRTGVHNILVATAVAARGLDIKGIGVVVNYDLPKEIDEYVHRIGRTGRLGNRGMSISFYD 616

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           +E D      + K++ +    +   L+              +     + I  K++G    
Sbjct: 617 EEVDTCLTKDLVKVLSEAEQTVPDWLTQKANASGYSQTYHGSGLFAASDIRTKNSGSRDW 676

Query: 410 KKNYSS 415
           +KN +S
Sbjct: 677 EKNRAS 682


>gi|217976993|ref|YP_002361140.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
 gi|217502369|gb|ACK49778.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
          Length = 448

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 146/429 (34%), Positives = 219/429 (51%), Gaps = 5/429 (1%)

Query: 18  DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLI 77
             GY KPTPIQ + IP VL   D+ GIAQTGTGKTA+F LP+L  L     +       +
Sbjct: 19  KLGYTKPTPIQAQAIPHVLTGRDLVGIAQTGTGKTAAFALPILHQLAANPQQPPRGGARV 78

Query: 78  LE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           L   PTRELA+Q+A++F   G    L+VA++ GG+P  AQ + L+RG DVL+ TPGR++D
Sbjct: 79  LVLSPTRELASQIAESFRSLGSEMQLSVAVVFGGVPHGAQIRALQRGLDVLVATPGRLVD 138

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
           H + G   +   E  V+DE D+MLD+GF+  I  I   +P  RQ L FSATM  E+ K++
Sbjct: 139 HLDSGVAHLGKTEFFVLDEVDQMLDLGFVKAIHRIVKTLPQRRQNLFFSATMPTEIAKLA 198

Query: 196 ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
            + L+NP ++ V   + TA+ +E   +       +   +              IIF   K
Sbjct: 199 ADLLKNPAQVSVTPVAKTADRVEQQVLFVETHRKRDILVDLLADAKM---ARTIIFTRTK 255

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           +    +   LE  G S  AIHGN  Q  R + L++F+ G ++ +VA+D+AARG+D+  V 
Sbjct: 256 RGADKVAQHLEVCGVSAAAIHGNKSQSQRERSLASFRAGRVRALVATDIAARGIDVDGVT 315

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDL 375
           HV NFD+P   E Y+HRIGRT RAG  G A +L    +   +  IE+L   ++   +   
Sbjct: 316 HVVNFDLPEVPEAYVHRIGRTARAGAEGVAISLCDGAERDLLRNIERLTRLRLPTEDRRA 375

Query: 376 SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDI 435
           +  +P       A           P  +     +++   +  +  P +   +    +   
Sbjct: 376 APGSPESRPPVRAAQTARPLEQRRPPNAGPGRPQERGRGAGPASSPAQSRPRFGASRPQG 435

Query: 436 QENDADSLG 444
           +    D   
Sbjct: 436 ERRAGDREA 444


>gi|171686908|ref|XP_001908395.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943415|emb|CAP69068.1| unnamed protein product [Podospora anserina S mat+]
          Length = 576

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 116/433 (26%), Positives = 197/433 (45%), Gaps = 19/433 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+ P +V ++ +    +PT IQ ++IP++L+  D  G ++TG+GKT +F +P+L 
Sbjct: 146 TFESLGVRPWLVQSLANMAIKRPTAIQRESIPMLLKGRDCIGGSRTGSGKTVAFSVPILQ 205

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +  + +      IL PTRELA Q+ +  +     ++L   L+ GG    AQ   L +
Sbjct: 206 QWAENPSAIFGV---ILTPTRELALQIFEQVKAISSPHSLKAILVTGGADMRAQAIALAQ 262

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILV--------IDEADRMLDMGFIPYIQNITSL 173
              ++I TPGR+ DH              V                    +P ++   S 
Sbjct: 263 RPHIVIATPGRLADHIRTSGYDTVCGLGRVRFVVLDEADRLLADNGPGSMLPDVEECLSA 322

Query: 174 VPFTRQTLL--FSATMTDELQ----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           +P   +     F+AT+T E+        +   +     EV+T                  
Sbjct: 323 LPPAEKRQTLLFTATITQEVMALKNMPRKPGREPVFVCEVDTEKLAIPPTLKQMHLQVPV 382

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             ++  L   LL  Q+  K+ IIFCN+      L H L      + ++H  + QR R+  
Sbjct: 383 THREHYLHMFLLTEQNVHKSIIIFCNRTSTADFLHHLLRLLDHRITSLHSKLPQRQRIDN 442

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L  F+    +++VA+D+AARGLDIP+V  V N+D+P   ++YIHR+GRT RAGR G A T
Sbjct: 443 LGRFRASAARILVATDVAARGLDIPEVKMVINYDIPRDPDDYIHRVGRTARAGRKGDAVT 502

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPL--EKIDIAQHNHARKNNPIPQKSTG 405
            V + D+  + AIE  + +K++    +  +L   +  E + +           + +    
Sbjct: 503 FVGQRDVDLVLAIEDRVGRKMEAWEEEGVNLETRVVREALKLVSEKKREALLELEEGKEV 562

Query: 406 FDRRKKNYSSQKS 418
             +RK+     ++
Sbjct: 563 GGKRKRGMEKLRA 575


>gi|238762292|ref|ZP_04623264.1| ATP-independent RNA helicase dbpA [Yersinia kristensenii ATCC
           33638]
 gi|238699639|gb|EEP92384.1| ATP-independent RNA helicase dbpA [Yersinia kristensenii ATCC
           33638]
          Length = 460

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 126/374 (33%), Positives = 203/374 (54%), Gaps = 8/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L 
Sbjct: 5   SFSSLTLPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLD 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            +  G     + + L+L PTRELA QV+    +  +       L + G  P   Q   L 
Sbjct: 65  KIAVGE---FVTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLV 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRI +H  +  L++++++ILV+DEADRMLDMGF   I ++ +  P  RQT
Sbjct: 122 HAPHIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++         +R  VN      +         +    +K   L     
Sbjct: 182 LLFSATYPAGIEQ----ISARVQRQPVNVEVDDGDEAPAIEQVFFETTREKRLPLLISAL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+  ++  +LE +G SV A+HG+++QR R ++L  F   + +++V
Sbjct: 238 SYYQPASCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+  V NF++    E ++HRIGRTGRAG  G A +L   +++    AI
Sbjct: 298 ATDVAARGLDIKDLELVVNFELAFDPEIHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHAI 357

Query: 361 EKLIEKKVDWLNGD 374
           E  ++ K+ W   +
Sbjct: 358 EDYMQMKLKWTPAE 371


>gi|115532546|ref|NP_001040788.1| hypothetical protein H20J04.4 [Caenorhabditis elegans]
 gi|24418257|gb|AAF39890.2| Hypothetical protein H20J04.4a [Caenorhabditis elegans]
          Length = 488

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 121/386 (31%), Positives = 194/386 (50%), Gaps = 10/386 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ LG+   +   +        TP+Q   IP +L+  D+ G A+TGTGKT +F +P+L 
Sbjct: 90  KFSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPILQ 149

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L            LIL PTRELA Q+A+ F   GK   L  ++++GG     Q ++L  
Sbjct: 150 KLSV---DPYGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQARELSE 206

Query: 122 GADVLICTPGRILDHFNRGKLL----MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              V++ TPGR+ D               I+  V+DEADRML+  +   ++ I   +   
Sbjct: 207 RPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESISEK 266

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKKCAL 234
           RQTLL SAT+T+ +  +     + P   E    +  S+     +   V   A        
Sbjct: 267 RQTLLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDRLEQKYVVCPVAVKDAYLVY 326

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + +    ++   + +IF    +    L +  E  GF V ++H  I Q+ R+  LS F+  
Sbjct: 327 VVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRSK 386

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           T+Q+++ +D+A+RGLDIP V  V N +VP   + YIHR+GR+ RAGR G A + V + D+
Sbjct: 387 TLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDV 446

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNP 380
           + + A+E++I KK+D L   + +   
Sbjct: 447 ELLQAVEQVIGKKLDELKVKIQTFRK 472


>gi|320586489|gb|EFW99159.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 440

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 89/375 (23%), Positives = 150/375 (40%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P++  A  D G+  P+ +Q   IP  L   D+   A++G GKTA FVL  L  
Sbjct: 58  FRDFLLKPELFRATADCGFEHPSEVQQTCIPQALIGGDIICQAKSGLGKTAVFVLATLQQ 117

Query: 63  LEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +E   G   V +         +        +         +           E    K  
Sbjct: 118 IEPVAGECSVLVMCHTRELAFQIRNEYNRFSKYMPEIKTGVFYGGTPIQKDAEILRNKET 177

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++           ++   L +    ++ +    +  +     +Q I    P  +Q 
Sbjct: 178 HPHIIVGTPGRLNALVRDKYLRLGSVRIFVLDECDKMLDQIDMRRDVQEIFRATPQQKQV 237

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++DE++ +   F+QNP    V+  +         +     +  K   L +    
Sbjct: 238 MMFSATLSDEIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIPLEEREKNRKLNEL--L 295

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      IIF         L   L +  F   A+H  + Q  R++    FKE   ++ V
Sbjct: 296 DELQFNQVIIFVKSTVRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICV 355

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+  RG+DI  +    N+D+P  A++Y+HR+GR GR G  G A + V+ E D + + A
Sbjct: 356 ATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVSNEQDKEVLKA 415

Query: 360 IEKLIEKKVDWLNGD 374
           IEK  E  +     D
Sbjct: 416 IEKRFEVALPEFPKD 430


>gi|195147728|ref|XP_002014827.1| GL19380 [Drosophila persimilis]
 gi|194106780|gb|EDW28823.1| GL19380 [Drosophila persimilis]
          Length = 437

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 133/436 (30%), Positives = 219/436 (50%), Gaps = 40/436 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + G  P+++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L+
Sbjct: 10  SWNESGFPPEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLS 69

Query: 62  ILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            ++            + P  +I+ PTRELA Q+ +   K+G+   +   +++GG+  E Q
Sbjct: 70  WIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETIKFGQPLGIRTVVVVGGLSREEQ 129

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 130 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 189

Query: 176 -------------------------FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
                                      RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 190 VTNLKPDTEEAEDENKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPSTVYIGSM 249

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               E  E           +K  +     +    +   IIF NQKK    L   LEK G+
Sbjct: 250 GKPTERTEQIVYMMGENDKRKKLMEILSRKIDPPV---IIFVNQKKGADVLAKGLEKLGY 306

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           + C +HG   Q  R   L+  K G   ++VA+D+A RG+DI DV  V N+D+    E+Y 
Sbjct: 307 NSCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYT 366

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A + V K+D      +++ +          +S+  P L     AQH
Sbjct: 367 HRIGRTGRAGKTGCAISFVTKDDSGLFYDLKQCV------TASPVSTCPPELTNHPEAQH 420

Query: 391 NHARKNNPIPQKSTGF 406
                     ++   F
Sbjct: 421 KPGTVVTKKRREEKIF 436


>gi|74204289|dbj|BAE39902.1| unnamed protein product [Mus musculus]
          Length = 427

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 165/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 46  FRDFVLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY  +  ++V      I  +    K    
Sbjct: 106 IEPVNGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    +R   L N    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 166 HVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRFEVNVAELPEEID 418


>gi|328709089|ref|XP_003243867.1| PREDICTED: probable ATP-dependent RNA helicase pitchoune-like
           [Acyrthosiphon pisum]
          Length = 511

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 117/392 (29%), Positives = 197/392 (50%), Gaps = 9/392 (2%)

Query: 2   DFADL--GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            F+ L   +    +  + D G+   T IQ KTIP +L+  D+ G A+TG+GKT +F++P 
Sbjct: 22  KFSSLEGHVCENTLKGIADMGFTVMTEIQAKTIPPLLEGRDLVGAAKTGSGKTLAFLIPA 81

Query: 60  LTILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K +   R     +I+ PTREL+ Q     ++  K+++ T  L++GG   + +  K
Sbjct: 82  VELIYKLKFMPRNGTGCIIISPTRELSMQTYGVLKELMKHHHHTYGLMMGGANRQTEATK 141

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G ++++ TPGR +    N    L  N++ L+IDEADR+LD+GF   I+ I +L+P  
Sbjct: 142 LSKGINIVVATPGRLLDHLQNSPDFLYKNLQCLIIDEADRILDIGFEEEIKQIINLLPKR 201

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSAT T +   ++   L+          S    T++          S+K  LL  
Sbjct: 202 RQTMMFSATKTHKTDALTTFALKKEPIYIGVDDSKVEATVDGLEQGYVICPSEKRFLLLF 261

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +    V      L      V  IHG   Q  R      F      
Sbjct: 262 TFLKKNRKKKVMVFFSSCLAVKYFHELLNYIDLPVMCIHGKQKQERRTTTFFQFCNAETG 321

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
           +++ +D+AARGLDIP V  +  +D P+  + YIHR+GRT R  G  G A  ++  E++  
Sbjct: 322 ILLCTDVAARGLDIPLVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGF 381

Query: 357 IDAIEKL---IEKKVDWLNGDLSSLNPPLEKI 385
           +  ++K    + +  D+    +S +   LEK+
Sbjct: 382 LQYLKKAKVPLNE-FDFSWNKISDIQLQLEKL 412


>gi|187779628|ref|ZP_02996101.1| hypothetical protein CLOSPO_03224 [Clostridium sporogenes ATCC
           15579]
 gi|187773253|gb|EDU37055.1| hypothetical protein CLOSPO_03224 [Clostridium sporogenes ATCC
           15579]
          Length = 421

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 119/416 (28%), Positives = 218/416 (52%), Gaps = 14/416 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L PK++  +       PT IQ KTIPL ++  D+ G ++TGTGKT +++LP+  
Sbjct: 4   SFDKLNLEPKLIEGLKKLNINIPTEIQEKTIPLAMENKDIIGQSETGTGKTLAYLLPIFK 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNKKL 119
            +   +  ++     IL PT ELA Q+ +  +    N N+      +IG    + Q +KL
Sbjct: 64  KINTEKREMQAI---ILAPTHELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +++ +PGRIL+   + K+  + ++ +VIDE D++LD   +  ++++       RQ
Sbjct: 121 KEKPHIIVGSPGRILELIKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKDVIKATLRERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT+T+    ++++ ++ P+ ++V   ++  E I+H ++       ++   + + L
Sbjct: 181 LMLFSATITESTLNIAKDLMKEPQIVKVKEKNTVNENIKHLYITGEH---RERIEILRKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    K  I+F N+ + +      L+        I+G  ++  R K L +F+ G IQ++
Sbjct: 238 IAATNPKRAIVFINRNEEIELTTLKLQYHKIKAYGIYGAAEKEQRKKALEDFRLGKIQIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V+SDL+ARGLD+ DV H+FN D+P   + Y+HR+GRTGRA + G A +++ +++I  I  
Sbjct: 298 VSSDLSARGLDVKDVTHIFNLDLPENPKEYLHRVGRTGRASKEGTAISIITEKEIPLIRK 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            EK     ++       +L      I+  + + +   +     S   D  KK  SS
Sbjct: 358 YEKEFNINIEEKKIYKGTL------INSKEKSSSYPKSKDKSTSAHKDNNKKKRSS 407


>gi|170576579|ref|XP_001893687.1| RNA-dependent helicase [Brugia malayi]
 gi|158600176|gb|EDP37484.1| RNA-dependent helicase, putative [Brugia malayi]
          Length = 553

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 133/382 (34%), Positives = 206/382 (53%), Gaps = 4/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF + G  P+V+  +L A + KPT IQ  + P+ L   D+  IA+TG+GKT +F+LP + 
Sbjct: 130 DFKEAGF-PQVLTDMLFANFQKPTVIQSISWPIALSGRDMVSIAKTGSGKTFAFILPAIV 188

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                  R     P  L+L PTRELA QV +  + Y +  +L++  L GG P   Q + L
Sbjct: 189 HTINQPPRGHQKSPSVLVLLPTRELAQQVEEVAKDYCRATDLSITCLFGGAPKATQARDL 248

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D++I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ + S +   RQ
Sbjct: 249 ERGVDIIIATPGRLMDFLEIGKTDLRRCTYLVLDEADRMLDMGFEPQIRKVVSQIRPDRQ 308

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQL 238
           TL+FSAT   +++K++ +FL +   + V +   +A       V    + +K+   +    
Sbjct: 309 TLMFSATWPKDVRKLAMDFLTDAAHLNVGSLELSANHNITQIVEIIDESNKQQRLMAILS 368

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     IIF   K+   +L   + + G+    IHG+  Q  R   LS F+ G   +
Sbjct: 369 DIMNKEDCKTIIFVETKRKADDLTRWMRRDGWPALCIHGDKGQSERDWALSEFRSGKTPI 428

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLD+ D+ +V NFD  N +E+Y+HRIGRTGR  + G A+T     +     
Sbjct: 429 LLATDVAARGLDVDDIKYVINFDYSNNSEDYVHRIGRTGRRDKTGVAYTFFTYANAPKAK 488

Query: 359 AIEKLIEKKVDWLNGDLSSLNP 380
            + K++E+    +  +L  +  
Sbjct: 489 DLIKVLEEANQSIPPELHQMAK 510


>gi|164657394|ref|XP_001729823.1| hypothetical protein MGL_2809 [Malassezia globosa CBS 7966]
 gi|159103717|gb|EDP42609.1| hypothetical protein MGL_2809 [Malassezia globosa CBS 7966]
          Length = 402

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 211/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++GLSP+++  V   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 30  NFDNMGLSPELLRGVFAYGFERPSAIQARAIVPVIKGHDVIAQAQSGTGKTATFSVAILQ 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+    L+L PTRELA Q+ +     G   N+     IGG        +L  
Sbjct: 90  RIDPNLKAVQA---LVLAPTRELAQQIQNVVVALGDYMNIQCHACIGGTNVREDMARLSD 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR+ D  NR     +++++  +DEAD ML  GF   +  +  L+P   Q +
Sbjct: 147 GAQVVVGTPGRVYDMINRRAFRTDHLKMFCLDEADEMLSRGFKDQMYEVFQLLPQDTQVV 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM +++  V++ F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 207 LLSATMPEDVLAVTKKFMRDPVRILVKRDELTLEGIKQFYIAVEKEEWKFET--LTDLYE 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L    F+V A+HG++DQ+ R  I+  F+ G+ ++++ 
Sbjct: 265 TVTITQAVIFCNTRRKVDWLTEQLHAMEFTVSAMHGDMDQQQREVIMREFRSGSSRVLIT 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 325 TDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTHDDVRMMRDIE 384

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +V+ +  +++ L
Sbjct: 385 QFYNTQVEEMPMNVADL 401


>gi|256831947|ref|YP_003160674.1| DEAD/DEAH box helicase domain-containing protein [Jonesia
           denitrificans DSM 20603]
 gi|256685478|gb|ACV08371.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM
           20603]
          Length = 544

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 137/439 (31%), Positives = 216/439 (49%), Gaps = 7/439 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  L   +V A+  AG V P PIQ  T+P+ L  HD+ G A+TGTGKT  F LP+L 
Sbjct: 24  SFADFPLRSDIVAALASAGIVSPFPIQSLTLPVALSGHDIIGQAKTGTGKTLGFGLPLLN 83

Query: 62  ILEKGRARVRM-------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ +++ PTRELA QVA + E      ++ +  L GG  +E 
Sbjct: 84  RVVAPGEEGFDQLPAPGKPQAVVIVPTRELAVQVAKDLELASSTRSVRIVQLYGGRAYEP 143

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L RG +V++ TPGR++D   +  L +    ++V+DEAD MLD+GF+P ++ I +  
Sbjct: 144 QIAALNRGVEVVVGTPGRMIDMLKQKHLTLLRAGVIVLDEADEMLDLGFLPDVEKILAQT 203

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQ +LFSATM   +  ++  ++  P  I    P     T+++     Y  +      
Sbjct: 204 PAVRQMMLFSATMPGAVVAMARRYMNQPTHIRAQDPEDLGSTVKNITQVVYRAHPLDKVE 263

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +         +IF   K+N   +   L ++GF+  A+HG++ Q +R + L  F+ G
Sbjct: 264 MIARILQARGRGLSVIFTRTKRNAAKVADELTERGFAAGALHGDLGQGAREQALRAFRNG 323

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ +V HV N+ VP   + Y+HR GRTGRAG  G A T V  ED+
Sbjct: 324 KVDVLVATDVAARGIDVENVTHVINYQVPEDDKVYLHRTGRTGRAGNKGTAVTFVDWEDL 383

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                I K +   +       SS       ++I +    R       ++       ++  
Sbjct: 384 HTWTLINKALGLNIPEPVETYSSSPHLFTDLNIPEGTKGRLPKDRQTRAGLQAEELEDVG 443

Query: 415 SQKSHIPLKESEKISKLQQ 433
                 P K S   S  ++
Sbjct: 444 ETGRRTPKKTSTPASSQRR 462


>gi|253702296|ref|YP_003023485.1| DEAD/DEAH box helicase [Geobacter sp. M21]
 gi|251777146|gb|ACT19727.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
          Length = 381

 Score =  143 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 135/383 (35%), Positives = 211/383 (55%), Gaps = 9/383 (2%)

Query: 1   MDFADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP- 58
           M FA LGL P+++ A+ +   + +P PIQ + IP VL+  D+  IA+TG+GKTASF+LP 
Sbjct: 1   MSFASLGLHPELLSAIAEQPEFKRPYPIQSEVIPAVLKGRDLIAIAKTGSGKTASFILPL 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF-EAQNK 117
           +  I  +     R  R L+L PTRELAAQ+ +  ++ G +    V               
Sbjct: 61  LQLIHGQDAGERRRLRALVLVPTRELAAQIEEVAKQLGSHLEPRVKTGAVFGGVAINPQM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              +G ++LI TPGR+L+   +  + ++++  LV+DEADR+    F   +Q I +L+P  
Sbjct: 121 IQLKGIELLIATPGRLLELVAKNSVKLSSVATLVLDEADRLYAEDFQDEMQQILALLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT+  E+++++ + L +P RIE+   +S  E I       Y   S +   L +
Sbjct: 181 RQNLLFSATIPPEVERLAASLLSDPMRIEIEAKASETELI---SQQIYLVDSSRKGPLLR 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L      K  ++F + +K   N+   L   G S    H  + Q  R   L+ FK G ++
Sbjct: 238 YLIKSGDWKQVLVFTSSQKRADNVTRKLVANGISASTFHSGMSQGGRTAALAKFKTGELR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+DLA+RG+D+  + HV N+++P    +Y HRIGRTGRA   G A TL+  ED+ H 
Sbjct: 298 VLVATDLASRGIDVQSLPHVVNYELPRSPIDYQHRIGRTGRAETAGVAVTLLCPEDLAHF 357

Query: 358 DAIEKLIEK---KVDWLNGDLSS 377
             IEK + +   ++D    DLS+
Sbjct: 358 KVIEKRLGQRLARIDTAELDLSA 380


>gi|15839285|ref|NP_299973.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa 9a5c]
 gi|9107937|gb|AAF85493.1|AE004075_8 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
          Length = 544

 Score =  143 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 131/408 (32%), Positives = 208/408 (50%), Gaps = 7/408 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F+ L L P ++  +  AG+   TPIQ  T+P+ L   D+ G AQTGTGKT +F++ ++
Sbjct: 10  LNFSSLDLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVV 69

Query: 61  T----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                           PR LIL PTRELA Q+ ++  K+G N  L  AL+ GG+ ++ Q 
Sbjct: 70  NRLLSRPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQR 129

Query: 117 KKLERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L +GADV+I TPGR I        + +   EI V+DEADRM D+GFI  I+ I   +P
Sbjct: 130 EMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLP 189

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                     + T   + +   +       E     +   T        Y    ++   L
Sbjct: 190 ERCSRQTLLFSATLSHRVLELAYEY-MNEPEKLVAETETVTTTRVRQRIYFPAEEEKIPL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L S+      ++F N K  V  +  +L++ G+ V  + G++ QR R  +L+ F++G 
Sbjct: 249 LLGLLSRSEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQKGQ 308

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 309 LEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERYAM 368

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
            +  IE  IE+K+  +    + L  PL + + A + +      I   S
Sbjct: 369 SLPDIEAYIEQKIP-VAAVTAELLAPLSRPERASNGNGDTVGDISPHS 415


>gi|32363421|sp|Q9PA24|RHLB_XYLFA RecName: Full=ATP-dependent RNA helicase rhlB
          Length = 543

 Score =  143 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 131/408 (32%), Positives = 208/408 (50%), Gaps = 7/408 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F+ L L P ++  +  AG+   TPIQ  T+P+ L   D+ G AQTGTGKT +F++ ++
Sbjct: 9   LNFSSLDLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVV 68

Query: 61  T----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                           PR LIL PTRELA Q+ ++  K+G N  L  AL+ GG+ ++ Q 
Sbjct: 69  NRLLSRPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQR 128

Query: 117 KKLERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L +GADV+I TPGR I        + +   EI V+DEADRM D+GFI  I+ I   +P
Sbjct: 129 EMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                     + T   + +   +       E     +   T        Y    ++   L
Sbjct: 189 ERCSRQTLLFSATLSHRVLELAYEY-MNEPEKLVAETETVTTTRVRQRIYFPAEEEKIPL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L S+      ++F N K  V  +  +L++ G+ V  + G++ QR R  +L+ F++G 
Sbjct: 248 LLGLLSRSEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQKGQ 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 308 LEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERYAM 367

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
            +  IE  IE+K+  +    + L  PL + + A + +      I   S
Sbjct: 368 SLPDIEAYIEQKIP-VAAVTAELLAPLSRPERASNGNGDTVGDISPHS 414


>gi|299135820|ref|ZP_07029004.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298601944|gb|EFI58098.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 490

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 136/398 (34%), Positives = 210/398 (52%), Gaps = 10/398 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FAD  +S  +   +  AG+V PTP+Q   IP  L+  D+   A TGTGKT SF++PM+
Sbjct: 30  VTFADFDISQPLKDRLAAAGFVTPTPVQAGAIPPALEGDDILATASTGTGKTLSFLIPMI 89

Query: 61  TILEKGRARVRMPRTL-----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             LE+                IL PTRELA QV D++ K          L+ GG+    Q
Sbjct: 90  DRLEEISKPSTRGAKNPILALILLPTRELAMQVLDSYFKICPTLKSDAVLVCGGLSENTQ 149

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            ++L RG  +++ TPGR+ D   R  + + ++++LV+DE DRMLDMGF+P I+ I   +P
Sbjct: 150 LEQLSRGPRLVVATPGRLEDFLRRRSVSLKDVDMLVLDEVDRMLDMGFLPAIKRIVQALP 209

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT+ +SAT+   ++++  +++ NP RIE+ T S  ++ +E               L 
Sbjct: 210 KDRQTMCYSATLDASIREIVRDYVNNPVRIEIGTTSKPSDRVELRVYTVMQDQK----LA 265

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           Q     ++     ++F   K     +   LEK G     IHG+  Q  R   L NF  G 
Sbjct: 266 QLDKMLKEEEGTYLVFSRTKHGADRIAKKLEKAGHLTEVIHGDRSQSQRTAALRNFTMGK 325

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            +++VA+D+AARG+D+  + HV N+D+PN +++++HRIGRTGRAG  G A T V   +  
Sbjct: 326 ARILVATDVAARGIDVSHIAHVVNYDLPNGSDDFVHRIGRTGRAGAKGVATTFVTPLEKG 385

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
               +E+ ++ K  W   D  +L        I  +N A
Sbjct: 386 DARKLERELKIKFQWHEAD-KNLEKEQRNQPIDMNNAA 422


>gi|251795451|ref|YP_003010182.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
 gi|247543077|gb|ACT00096.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
          Length = 472

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 131/478 (27%), Positives = 227/478 (47%), Gaps = 28/478 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + DLG++  +   +       P+ IQ + IP +L+  DV   +QTG+GKT +++LPML 
Sbjct: 5   TWNDLGINKALGDKLEANNIKVPSAIQAEAIPTLLEGRDVSARSQTGSGKTLAYLLPMLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     ++     IL PT+ELA Q+    E Y +   L V  LIGG   + Q +KL+ 
Sbjct: 65  QLKPSSGAIQAI---ILAPTQELAMQIVRVAEGYAEPLGLRVQQLIGGAAMKRQIEKLKL 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRI +     KL ++++  +VIDEAD++ ++G    ++ I   +   RQ  
Sbjct: 122 RPQIVIGTPGRIHELLKLRKLKLSDVRHIVIDEADQVFELGSTREVETILFAMSQERQLA 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT  D + +    ++++  RI++      +ETI            +      + +  
Sbjct: 182 FFSATYPDVMARFEGRWMKDTVRIQIAPEQRVSETI---NNFYVVCDKRDKPDAARRIVR 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ ++F N  +N+ N    L  +GFSV  ++G+ D++ R   L+ F+EG  QL++A
Sbjct: 239 MLKPESALLFLNVTENIANWEAKLSYEGFSVETLYGDSDKQRRAATLARFREGKTQLLLA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N D P  A++Y+HR GRTGR GR G   +L+  ++   +D   
Sbjct: 299 TDVAARGLDIEGLQLVINLDPPIDADHYVHRAGRTGRMGRKGTVISLITPQERFIMDKFR 358

Query: 362 KLIEKKVDWL---------NGDLS---SLNPPLEKIDIAQHNHAR-----KNNPIPQKST 404
           K +  ++              DL    S  P   +  + Q    R     KN+   +   
Sbjct: 359 KSLRIELPEKAMYKGEFVDPSDLPNKVSARPSPRRTAVEQEVSTRSFVAPKNSKEWESLL 418

Query: 405 GFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
             +R+ K  +++          K +  +Q+   +  D        P ++  K   + N
Sbjct: 419 KEERKPKKGAAKPESAAPAPRPKPAATKQERLRDKKDKGA-----PKWLKAKRESQDN 471


>gi|198425972|ref|XP_002127372.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           [Ciona intestinalis]
          Length = 790

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 135/434 (31%), Positives = 209/434 (48%), Gaps = 35/434 (8%)

Query: 2   DFADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++ + G L P++V  +   GY  PTPIQ + IP+     D+ G+A+TG+GKTA+F++P+L
Sbjct: 362 NWKECGDLPPEIVEVIHRIGYKDPTPIQRQAIPIGFLNRDIIGVAETGSGKTAAFLIPLL 421

Query: 61  TI------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                   +E+     + P  LIL PTRELA Q+ +   K+GK   +    +IGG+  E 
Sbjct: 422 AWITSLPKIERLEDADKGPYALILAPTRELAQQIEEETIKFGKELGIRTVAVIGGLSRED 481

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  KL  G +++I TPGR++D      ++++    +V+DEADRM+DMGF P +Q I   +
Sbjct: 482 QGFKLRMGCEIVIATPGRLIDVLENRYIVLSQCTYVVLDEADRMIDMGFEPDVQKILDHM 541

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-------------------- 214
           P T Q     +     + K +       ++  + T +                       
Sbjct: 542 PVTNQKPDDESMEDKIIMKSNFLTKHKYRQTVMFTATMPVAVERLARSYLRRPAIVYIGS 601

Query: 215 --ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             + IE      Y     +       L  +      I+F NQKK    L  SLEK G++ 
Sbjct: 602 AGKPIERVKQIVYLVKENEKRKKLLGLLEKGITPPVIVFVNQKKGCDVLAKSLEKMGYNS 661

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
             +HG   Q  R   LS  K G+  ++VA+D+A RG+DI DV  + NFD+    E+Y HR
Sbjct: 662 TTLHGGKGQEHRELALSGLKNGSKDILVATDVAGRGIDIQDVTLIINFDMAKNIEDYTHR 721

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T + + D      + + +      +   +SS  P L++   AQH  
Sbjct: 722 IGRTGRAGKTGTAVTFLTQSDSAVFYDLRQAL------IESPVSSCPPELDRHPEAQHKP 775

Query: 393 ARKNNPIPQKSTGF 406
                   ++ T F
Sbjct: 776 GTILTKKRREETIF 789


>gi|163802622|ref|ZP_02196513.1| ATP-dependent RNA helicase DbpA [Vibrio sp. AND4]
 gi|159173510|gb|EDP58330.1| ATP-dependent RNA helicase DbpA [Vibrio sp. AND4]
          Length = 459

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 153/462 (33%), Positives = 252/462 (54%), Gaps = 23/462 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL+P ++  +    Y   TPIQ  ++P++L + DV G  +TG+GKTA+F L +L+
Sbjct: 5   TFDQVGLNPALLETLESLNYTHMTPIQALSLPVILNQRDVIGQGKTGSGKTAAFGLGVLS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+   +L+L PTRELA QVA      G+  +    L +  G+P   Q   LE
Sbjct: 65  NLNVKRFRVQ---SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH ++G++ +  +  LV+DEADRMLDMGF   +  I    P  RQT
Sbjct: 122 HGAHILVGTPGRILDHLDKGRINLEELNTLVLDEADRMLDMGFQDALDAIIDAAPKQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT   +++++++  +++P+ I+V +   T+  ++H +     +   +         
Sbjct: 182 LLFSATFPKKIEQIAQRIMRSPEMIKVESTHDTSSIVQHFYKVEGTEARDEALANLL--- 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++FCN KK V N+   L  +GFSV  +HG+++QR R + L+ F   ++ ++V
Sbjct: 239 LTHQPESAVVFCNTKKEVQNVADELHHKGFSVIELHGDLEQRERDQALTQFANKSVSILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+   ++D   +  I
Sbjct: 299 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARI 358

Query: 361 EKLIEKKVDWLNGDL---SSLNPPLEK-----IDIAQHNHARKNNPI-----PQKSTGFD 407
           E+ ++  +D +   L   S+L P   K     ID  +    R  + +         TG  
Sbjct: 359 EEYLD--MDVVPATLPAKSNLQPYQAKMVTISIDGGKKQKVRAGDILGCLTGKGGITGAQ 416

Query: 408 RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNM 449
             K    + ++++ +++S    K  Q I +       FR  +
Sbjct: 417 VGKIQLMAMRAYVAVEKS-VAKKALQVISDGKMKGRQFRARI 457


>gi|50295040|ref|XP_449931.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74608117|sp|Q6FIL3|HAS1_CANGA RecName: Full=ATP-dependent RNA helicase HAS1
 gi|49529245|emb|CAG62911.1| unnamed protein product [Candida glabrata]
          Length = 494

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 112/391 (28%), Positives = 192/391 (49%), Gaps = 8/391 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L LS   + A+   G+ K TP+Q +TIP ++   DV G A+TG+GKT +F+LP + 
Sbjct: 30  SFKSLNLSQPTMRAIEKMGFSKMTPVQARTIPPLMAGRDVLGAAKTGSGKTLAFLLPTIE 89

Query: 62  ILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   + + R     +I+ PTRELA Q+     +  + ++ T  ++IGG     + +KL 
Sbjct: 90  LLHSLKFKPRNGTGVIIITPTRELALQIFGVVRELMEFHSQTFGIVIGGANRRQEAEKLM 149

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G ++L+ TPGR +    N    +  N++ LVIDEADR+L++GF   ++ I  ++P   +
Sbjct: 150 KGVNLLVATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDR 209

Query: 180 TLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             + FSAT T +++ +S   L+             + T +          S K  LL   
Sbjct: 210 QSMLFSATQTTKVEDLSRISLRPGPLFINVVSEHDSSTADGLEQGYVVCESDKRFLLLFS 269

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +   +V      L      V  +HG   Q+ R      F      +
Sbjct: 270 FLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGI 329

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R     GK+   +   ++  +
Sbjct: 330 LICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTNGKGKSLMFLIPNELGFL 389

Query: 358 DAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
             + K  +  ++        ++++   LEK+
Sbjct: 390 RYL-KAAKVPLNEYEFPTNKIANVQSQLEKL 419


>gi|195032613|ref|XP_001988529.1| GH11216 [Drosophila grimshawi]
 gi|193904529|gb|EDW03396.1| GH11216 [Drosophila grimshawi]
          Length = 864

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 126/433 (29%), Positives = 204/433 (47%), Gaps = 34/433 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + G  P+++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L+
Sbjct: 437 SWNESGFPPEIIEIIDTVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLS 496

Query: 62  ILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            ++            + P  +I+ PTRELA Q+ +   K+G+   +   +++GG+  E Q
Sbjct: 497 WIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETIKFGQPLGIRTVVVVGGLSREEQ 556

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 557 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 616

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            T           ++    +    +  ++  + T +                        
Sbjct: 617 VTNLKPDTEEAEDEKKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSV 676

Query: 215 -ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            +  E      Y             + S       IIF NQKK    L   LEK G++ C
Sbjct: 677 GKPTERTNQIVYMMGENDKRKKLMQILSAGIEPPVIIFVNQKKGADVLAKGLEKLGYNSC 736

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            +HG   Q  R   L+  K G   ++VA+D+A RG+DI DV  V N+D+    E+Y HRI
Sbjct: 737 TLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTHRI 796

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           GRTGRAG+ G A + V K+D      +++ +          +S+  P L     AQH   
Sbjct: 797 GRTGRAGKTGVAISFVTKDDSGLFYDLKQCV------TASPVSTCPPELTNHPEAQHKPG 850

Query: 394 RKNNPIPQKSTGF 406
                  ++   F
Sbjct: 851 TVVTKKRREEKIF 863


>gi|20302732|gb|AAM18861.1|AF391287_2 unknown [Branchiostoma floridae]
          Length = 427

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 93/375 (24%), Positives = 163/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY       V      I  +    K    
Sbjct: 106 IEPVDGQVAVLVMCHTRELAFQISKEYERFSKYMPTIKNAVFFGGMPIQKDRNTLKTNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L +    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 166 HIVVATPGRLLALARDKSLNLKHVKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  + V+  +                  K   L        
Sbjct: 226 FSATLSKEIRPVCKKFMQDPMEVYVDDETKLTLHGLQQHYVKLKDNEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+K  + FK    +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRAMGQEERLKRYNQFKNFERRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKVLNEVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRFEVNVSELPDEID 418


>gi|296387620|ref|ZP_06877095.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PAb1]
          Length = 523

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 130/373 (34%), Positives = 211/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P ++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ ++T 
Sbjct: 137 FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQ 196

Query: 63  ----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K+
Sbjct: 197 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQ 256

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 257 LEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 316

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT TD++  +++ +  +P  +E+   +  ++T+E    A       K    
Sbjct: 317 GERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYN 376

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                +Q+  +  ++F N+K  V  +   L K G S   + G++ Q  R++ L  F+EG 
Sbjct: 377 L---VAQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 433

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 434 IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAF 493

Query: 356 HIDAIEKLIEKKV 368
            +  IE+L+ +K+
Sbjct: 494 ALPPIEELLGRKI 506


>gi|161486758|ref|YP_789265.2| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 507

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 130/373 (34%), Positives = 211/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P ++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ ++T 
Sbjct: 121 FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQ 180

Query: 63  ----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K+
Sbjct: 181 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQ 240

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 241 LEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 300

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT TD++  +++ +  +P  +E+   +  ++T+E    A       K    
Sbjct: 301 GERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYN 360

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                +Q+  +  ++F N+K  V  +   L K G S   + G++ Q  R++ L  F+EG 
Sbjct: 361 L---VAQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 417

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 418 IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAF 477

Query: 356 HIDAIEKLIEKKV 368
            +  IE+L+ +K+
Sbjct: 478 ALPPIEELLGRKI 490


>gi|107103380|ref|ZP_01367298.1| hypothetical protein PaerPA_01004450 [Pseudomonas aeruginosa PACS2]
          Length = 523

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 130/373 (34%), Positives = 211/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P ++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ ++T 
Sbjct: 137 FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQ 196

Query: 63  ----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K+
Sbjct: 197 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQ 256

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 257 LEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 316

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT TD++  +++ +  +P  +E+   +  ++T+E    A       K    
Sbjct: 317 GERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYN 376

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                +Q+  +  ++F N+K  V  +   L K G S   + G++ Q  R++ L  F+EG 
Sbjct: 377 L---VAQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 433

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 434 IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAF 493

Query: 356 HIDAIEKLIEKKV 368
            +  IE+L+ +K+
Sbjct: 494 ALPPIEELLGRKI 506


>gi|152983852|ref|YP_001346629.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PA7]
 gi|150959010|gb|ABR81035.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PA7]
          Length = 529

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 130/373 (34%), Positives = 211/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P ++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ ++T 
Sbjct: 143 FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQ 202

Query: 63  ----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K+
Sbjct: 203 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQ 262

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 263 LEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 322

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT TD++  +++ +  +P  +E+   +  ++T+E    A       K    
Sbjct: 323 GERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYN 382

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                +Q+  +  ++F N+K  V  +   L K G S   + G++ Q  R++ L  F+EG 
Sbjct: 383 L---VAQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 439

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 440 IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAF 499

Query: 356 HIDAIEKLIEKKV 368
            +  IE+L+ +K+
Sbjct: 500 ALPPIEELLGRKI 512


>gi|313109282|ref|ZP_07795250.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 39016]
 gi|310881752|gb|EFQ40346.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 39016]
          Length = 523

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 130/373 (34%), Positives = 211/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P ++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ ++T 
Sbjct: 137 FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQ 196

Query: 63  ----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K+
Sbjct: 197 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQ 256

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 257 LEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 316

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT TD++  +++ +  +P  +E+   +  ++T+E    A       K    
Sbjct: 317 GERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYN 376

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                +Q+  +  ++F N+K  V  +   L K G S   + G++ Q  R++ L  F+EG 
Sbjct: 377 L---VAQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 433

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 434 IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAF 493

Query: 356 HIDAIEKLIEKKV 368
            +  IE+L+ +K+
Sbjct: 494 ALPPIEELLGRKI 506


>gi|218889855|ref|YP_002438719.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa LESB58]
 gi|254236766|ref|ZP_04930089.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa C3719]
 gi|254242553|ref|ZP_04935875.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 2192]
 gi|308154507|ref|NP_252550.3| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PAO1]
 gi|32363412|sp|Q9HXE5|RHLB_PSEAE RecName: Full=ATP-dependent RNA helicase rhlB
 gi|122261039|sp|Q02S21|RHLB_PSEAB RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739542|sp|B7UUT0|RHLB_PSEA8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|9950039|gb|AAG07248.1|AE004803_4 ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PAO1]
 gi|115587113|gb|ABJ13128.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168697|gb|EAZ54208.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa C3719]
 gi|126195931|gb|EAZ59994.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 2192]
 gi|218770078|emb|CAW25840.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa LESB58]
          Length = 397

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 130/373 (34%), Positives = 211/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P ++ A+ D G+   TPIQ + +   L+  D  G AQTGTGKTA+F++ ++T 
Sbjct: 11  FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQ 70

Query: 63  ----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K+
Sbjct: 71  LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQ 130

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 131 LEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 190

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT TD++  +++ +  +P  +E+   +  ++T+E    A       K    
Sbjct: 191 GERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYN 250

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                +Q+  +  ++F N+K  V  +   L K G S   + G++ Q  R++ L  F+EG 
Sbjct: 251 L---VAQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 308 IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAF 367

Query: 356 HIDAIEKLIEKKV 368
            +  IE+L+ +K+
Sbjct: 368 ALPPIEELLGRKI 380


>gi|70994563|ref|XP_752059.1| ATP dependent RNA helicase (Dbp1) [Aspergillus fumigatus Af293]
 gi|74671260|sp|Q4WP13|DED1_ASPFU RecName: Full=ATP-dependent RNA helicase ded1
 gi|66849693|gb|EAL90021.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus fumigatus
           Af293]
          Length = 674

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 136/396 (34%), Positives = 206/396 (52%), Gaps = 22/396 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+   
Sbjct: 190 FTNPPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 249

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                              GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 250 AFQTGPSPVPAQASGQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVV 309

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 310 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQ 369

Query: 167 IQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 370 IRRIVEGEDMPNVNERQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVE 429

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +       +L +  T    +IF   K+    L   L  Q F   AIHG+  QR
Sbjct: 430 YVEDHDKRSVL--LDILHTHGTSGLTLIFVETKRMADALSDFLLNQRFPATAIHGDRTQR 487

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 488 ERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 547

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A     + +   +  +  L+++    +   L S+
Sbjct: 548 GIATAFFNRSNRGVVRELIDLLKEAHQEVPSFLESI 583


>gi|10039333|dbj|BAB13309.1| PL10-related protein PoPL10 [Ephydatia fluviatilis]
          Length = 491

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 140/420 (33%), Positives = 221/420 (52%), Gaps = 25/420 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  LS  +   V    Y KPTP+Q   +P++L + D+   AQTG+GKTA+F++P+L 
Sbjct: 33  KFSDCQLSEIIQLNVELTHYSKPTPVQKHALPIILSKRDLMACAQTGSGKTAAFLIPILD 92

Query: 62  ILEKGRA------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
           ++ +               R + P  L+L PTRELA Q+ +   K+     +   ++ GG
Sbjct: 93  LVFQQGCPRPPSDSRYSGRRKQYPTALVLGPTRELAVQIFEEARKFSYRSRVRPCVVYGG 152

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
               AQ + LE G  +L+ TPGR++D   RGK+ ++ +  LV+DEADRMLDMGF P I+ 
Sbjct: 153 ADIGAQMRDLEHGCHLLVATPGRLVDMMERGKIGLDGVRYLVLDEADRMLDMGFEPQIRR 212

Query: 170 ITSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I           RQTL+FSAT   E+Q ++ +FL +   + V    ST++ I    V   
Sbjct: 213 IVEQDVMPKTGDRQTLMFSATFPKEIQMLARDFLHDYIFLAVGRVGSTSQNITQKVVWVD 272

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
               +   L      + DT+   ++F   KKN   L + L  QG+S   IHG+  Q  R 
Sbjct: 273 ECDKRSFLLDLLNASAPDTL--TLVFVETKKNCDALDNFLYTQGYSCTCIHGDRTQGERE 330

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L +F+   + ++VA+ +AAR LDIP+V HV NFD+P   E Y+HRIGRTG+ G  G A
Sbjct: 331 QALHSFRTARMPILVATAVAARSLDIPNVKHVVNFDMPADIEEYVHRIGRTGKVGNLGLA 390

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            +   + +    + + +L+ + +  +   + SL+  +++        AR  +   + S G
Sbjct: 391 TSFFNERNRNLCNDLMELLLETMQEVPSWMDSLSYEMKQ-------QARIKSQTKKYSGG 443


>gi|67479813|ref|XP_655288.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56472415|gb|EAL49901.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 684

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 211/386 (54%), Gaps = 5/386 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+ + +  VL  GY  PTPIQ K IP +L+ +D+  +A+TG+GKTA++++P++  
Sbjct: 15  FQSMGLNKQTLLGVLKKGYRVPTPIQRKAIPAILRGNDIIAMARTGSGKTAAYLVPIINR 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE         R+LI+ PTRELA Q    F + GK  NL  +L+IGG     Q   L  G
Sbjct: 75  LETHSTEG--VRSLIICPTRELALQTIKVFNELGKLTNLKASLIIGGSKLSDQFDNLSSG 132

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+        + +N +E++  DEAD M + GF   + +I  ++P TRQ LL
Sbjct: 133 PDIIVATPGRLTFILEGANISLNRVEMVCFDEADLMFESGFSEQVSDIMRMLPPTRQILL 192

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L +  +N L+ P+ I ++T    +  +   F     ++ K+  LL  LL   
Sbjct: 193 FSATLPRNLAEFLKNTLKQPEIIRLDTEERLSPDL-DNFFYHVKEHEKEGHLLYLLLDLI 251

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  ++FC  +  V  L   L+        + G  DQ+ R   L  F++    +++ +
Sbjct: 252 GDKEQTVVFCATRHEVEYLNEILKIFDIKTSIMFGKADQQEREINLKKFRKQETHVLLVT 311

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE- 361
           D+AARG+DIP++ +V N+D P   + YIHR GR  RAGR GK +  V  +++ ++  ++ 
Sbjct: 312 DVAARGVDIPELDNVINYDFPATPKLYIHRCGRVARAGRMGKCYNFVQTDEVGYLMDLQV 371

Query: 362 -KLIEKKVDWLNGDLSSLNPPLEKID 386
             L  K++++     S ++P + +I 
Sbjct: 372 FALENKEIEFGVIPRSFIDPYIYQIQ 397


>gi|328771122|gb|EGF81162.1| hypothetical protein BATDEDRAFT_10391 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 521

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 199/369 (53%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           + FA  G    ++  ++  GY +PT IQ + +P+ L  HD+ GIAQTG+GKTA+F+ PM 
Sbjct: 67  ISFAHFGFDESLLNCIIKHGYTEPTGIQRQAVPVALSGHDLIGIAQTGSGKTAAFLWPML 126

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNK 117
              + +    R   P  L+L PTRELA Q+    +K+ K Y  + V +L GG+    Q K
Sbjct: 127 VHLMDQPELERGDGPIGLVLAPTRELAHQIYLEAKKFSKAYQGVRVTVLYGGVSKNDQFK 186

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G ++L+ TPGR++D        +  +  LV+DEAD+ML++GF P +++I   +   
Sbjct: 187 ELRAGVEILVATPGRLIDLIKMKATNLTRVTYLVLDEADQMLNLGFEPQVRSICDHIRPD 246

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT    ++ +    L NP RI +     +   I    V       K   L   
Sbjct: 247 RQTLLFSATFRKRIEHLVRALLNNPTRISIGNVGQSNSDITQIPVVLENDGVKFGWLTAH 306

Query: 238 LLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           L +        + +      + +    S  +    V A+HG++ Q  R ++L  FK G  
Sbjct: 307 LPRLVAQGPVLVFVSRKAGVDELASNLSAAQIASVVGALHGDLMQAQRDQVLKEFKSGKS 366

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++V++D+A+RGLDI  V  V N+DV    ++Y+HRIGRTGRAG  G A+TL+  ++ + 
Sbjct: 367 RVLVSTDVASRGLDIKGVKTVINYDVSKDIDSYVHRIGRTGRAGEKGTAYTLITMQEDRF 426

Query: 357 IDAIEKLIE 365
              + +L+E
Sbjct: 427 ASDLVQLME 435


>gi|238491700|ref|XP_002377087.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus flavus
           NRRL3357]
 gi|220697500|gb|EED53841.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus flavus
           NRRL3357]
          Length = 676

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 135/396 (34%), Positives = 207/396 (52%), Gaps = 22/396 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+   
Sbjct: 189 FTNPPLDDHLIANITLAHYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 248

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                              GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 249 AFQNGPSPTPAPASGQFSYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVV 308

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ L++DEADRMLDMGF P 
Sbjct: 309 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQ 368

Query: 167 IQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 369 IRRIVEGEDMPHVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVE 428

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +       +L +  T    +IF   K+   +L   L  Q F   AIHG+  QR
Sbjct: 429 YVEDHDKRSVL--LDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQR 486

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 487 ERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 546

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A     + +   +  +  L+++    +   L S+
Sbjct: 547 GIATAFFNRGNRGVVRDLIDLLKEAHQEVPSFLESI 582


>gi|169773691|ref|XP_001821314.1| ATP-dependent RNA helicase ded1 [Aspergillus oryzae RIB40]
 gi|91206555|sp|Q2UGK3|DED1_ASPOR RecName: Full=ATP-dependent RNA helicase ded1
 gi|83769175|dbj|BAE59312.1| unnamed protein product [Aspergillus oryzae]
          Length = 675

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 135/396 (34%), Positives = 207/396 (52%), Gaps = 22/396 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+   
Sbjct: 188 FTNPPLDDHLIANITLAHYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 247

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                              GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 248 AFQNGPSPTPAPASGQFSYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVV 307

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ L++DEADRMLDMGF P 
Sbjct: 308 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQ 367

Query: 167 IQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 368 IRRIVEGEDMPHVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVE 427

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +       +L +  T    +IF   K+   +L   L  Q F   AIHG+  QR
Sbjct: 428 YVEDHDKRSVL--LDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQR 485

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 486 ERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 545

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A     + +   +  +  L+++    +   L S+
Sbjct: 546 GIATAFFNRGNRGVVRDLIDLLKEAHQEVPSFLESI 581


>gi|225682474|gb|EEH20758.1| ATP-dependent RNA helicase has1 [Paracoccidioides brasiliensis
           Pb03]
          Length = 607

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 123/411 (29%), Positives = 201/411 (48%), Gaps = 13/411 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L LS K + A+ D  +   T IQ + IP +L   DV G A+TG+GKT +F++P + 
Sbjct: 129 KFSELNLSEKTMKAIEDMKFETMTEIQRRGIPPLLAGRDVLGAAKTGSGKTLAFLIPAVE 188

Query: 62  ILEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + R    +I+  PTRELA Q+     +   +++ T  ++IGG    A+ +KL 
Sbjct: 189 MLSALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAEKLA 248

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-VPFTR 178
           +G ++LI TPGR +    N    +  N++ LVIDEADR+L++GF   ++ I  +     R
Sbjct: 249 KGVNLLIATPGRLLDHLQNTQGFIFRNLKALVIDEADRILEVGFEDEMRQIVKILPSEDR 308

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT T +++ ++   L+               T+E          S K  LL   
Sbjct: 309 QTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEYSTVEGLEQGYVICDSDKRFLLLFS 368

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +    V      L      V  +HG   Q+ R      F       
Sbjct: 369 FLKRNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGT 428

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R A   G++   +   ++  +
Sbjct: 429 LICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGANGKGRSLMFLQPSEVGFL 488

Query: 358 DAIEKLIEKKVDWLNGDLS-----SLNPPLEKIDIAQHNHARKNNPIPQKS 403
             ++   E +V  +  D       ++   LEK+ I Q+ +  K+     +S
Sbjct: 489 KHLK---EARVPVVEFDFPAKKIVNVQSQLEKL-IGQNYYLNKSAKDGYRS 535


>gi|323332194|gb|EGA73605.1| Has1p [Saccharomyces cerevisiae AWRI796]
          Length = 505

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 102/390 (26%), Positives = 188/390 (48%), Gaps = 6/390 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS   + A+   G+   T +Q +TIP +L   DV G A+TG+GKT +F++P + 
Sbjct: 43  KFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 102

Query: 62  ILEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-L 119
           +L   + + R    +I + PTRELA Q+     +  + ++ T  ++IGG     + +K +
Sbjct: 103 LLHSLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLM 162

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    ++      +    N    +  N++ L+IDEADR+L++GF   ++ I  ++P   +
Sbjct: 163 KGVNMLIATPGRLLDHLQNTQGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNEDR 222

Query: 180 TLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             + FSAT T +++ ++   L+         P +   T +          S K  LL   
Sbjct: 223 QSMLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFLLLFS 282

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +   +V      L      V  +HG   Q+ R      F      +
Sbjct: 283 FLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGI 342

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R  +  GK+   +   ++  +
Sbjct: 343 LICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNELGFL 402

Query: 358 DAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
             ++  K+   + ++    ++++   LEK+
Sbjct: 403 RYLKASKVPLNEYEFPENKIANVQSQLEKL 432


>gi|296234835|ref|XP_002762632.1| PREDICTED: ATP-dependent RNA helicase DDX3Y [Callithrix jacchus]
          Length = 656

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 134/425 (31%), Positives = 216/425 (50%), Gaps = 30/425 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D+ +   ++  +    Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+
Sbjct: 177 NFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILS 236

Query: 62  ILEKGR---------------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
            +                      + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 237 QMYTDGPGEALKAVKGNGRYGHSKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 296

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q   LE G  +L+ TPGR++D   R K+ ++  + LV+DEADRMLDMGF P 
Sbjct: 297 YGGANIGQQIGDLEHGCHLLVATPGRLVDMMERRKIALDFCKYLVLDEADRMLDMGFEPQ 356

Query: 167 IQNITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I             T++FSAT   ++Q ++ +FL     + V    ST+E I    V
Sbjct: 357 IRRIVEQDCMPPKGVRHTMMFSATFPKKIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 416

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK V +L   L  +G++  +IHG+  QR
Sbjct: 417 WVEDLDKRSFLLDLLGATGRDSLI--LVFVVTKKEVDSLEEFLYHEGYACTSIHGDRSQR 474

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
           +R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGRAG  
Sbjct: 475 AREEALRQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRAGNL 534

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           G A +   ++++     +  L+ +    +   L S         +A  +H +  N    K
Sbjct: 535 GLATSFFNEKNVNIAKDLLDLLVEAKQEVPSWLES---------VAYKHHYKGGNRGQSK 585

Query: 403 STGFD 407
           S  F 
Sbjct: 586 SNRFS 590


>gi|81427999|ref|YP_394998.1| putative ATP-dependent DNA/RNA helicase [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78609640|emb|CAI54686.1| Putative ATP-dependent DNA/RNA helicase [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 451

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 143/447 (31%), Positives = 220/447 (49%), Gaps = 20/447 (4%)

Query: 1   MD--FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           MD  F    L P+++ A+ +  + KPT +Q + IP +     V G +QTG+GKT +F+LP
Sbjct: 1   MDNQFTQFNLKPEIITALDEMHFTKPTAVQRRVIPAINAGKSVIGQSQTGSGKTHAFLLP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQN 116
           +L  L   +  V++    I  P+RELA Q+    E   K+ N  + +   +GG   + Q 
Sbjct: 61  LLNKLVPEKDEVQIV---ITAPSRELAYQIYTAAELITKHMNGDIRIGRYVGGTDKQRQI 117

Query: 117 KK-LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           +K  +    ++I TPGRILD      L +   + LVIDEAD  LDMGF+  + NI S +P
Sbjct: 118 EKLQQHQPQIVIGTPGRILDLITSKALKIYTAKTLVIDEADMTLDMGFLKPVDNIASRLP 177

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q ++FSAT+ D+LQ   + ++ NP   EV   +  + TI            K     
Sbjct: 178 EDLQMMVFSATIPDKLQPFLQKYMHNPVIEEVKNETIISPTI---ENWLVPTKGKALNQT 234

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L +       +IF N K  V ++ H L+ QG  V  IHG+I  R R +I+       
Sbjct: 235 IYSLITMGHPFMVLIFANTKSKVDDIHHYLQSQGLKVAKIHGDIPPRQRKRIMKEVHNLD 294

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPN-RAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            Q +VA+DLAARG+DI  +  V N +VP    E ++HR+GRTGR G  G A TL   +D 
Sbjct: 295 YQYVVATDLAARGIDIEGISMVINAEVPREDLEFFVHRVGRTGRNGLKGTAITLYGPDDE 354

Query: 355 KHIDAIE----KLIEKKVDWLNGDL-SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           + +  IE    K   K   + +G+L +S +    K  +A   H    N          +R
Sbjct: 355 QAVAQIEAMGIKFTPKA--FKDGELVTSYDRNRRKKRVAT-THELDVNLKGFVKKAKIKR 411

Query: 410 KKNYSSQKSHIPLKESEKISKLQQDIQ 436
           K  Y  +      K++ +  +++Q ++
Sbjct: 412 KPGYKKKIKEAIQKDARQKRRIEQRVE 438


>gi|149238864|ref|XP_001525308.1| hypothetical protein LELG_03236 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152013494|sp|A5E0U9|DBP8_LODEL RecName: Full=ATP-dependent RNA helicase DBP8
 gi|146450801|gb|EDK45057.1| hypothetical protein LELG_03236 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 444

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 124/431 (28%), Positives = 196/431 (45%), Gaps = 22/431 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG++  +  ++       PT IQ   IP +L+  D  G A+TG+GKT +F   MLT
Sbjct: 4   SFKELGVAKWLSESLEAMKIHSPTSIQSACIPEILKGRDCIGGAKTGSGKTIAFAALMLT 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +          LIL PTRELA Q+A+ F   G   N+ V +++GG  F  Q  +L++
Sbjct: 64  QWSQ---DPFGIFGLILTPTRELALQIAEQFAALGALMNIKVCVVVGGEDFVKQTLELQK 120

Query: 122 GADVLICTPGRILDHFNRGKL------LMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
               +I TPGR+ DH                  +L   +       G             
Sbjct: 121 KPHFVIATPGRLADHILNSGEETVSGLRRIKYLVLDEADRLLSNSFGSDLQRCFTILPPS 180

Query: 176 FTRQTLLFSATMTDEL------QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
             RQTLLF+AT+TD +       +          +++                     Y 
Sbjct: 181 EKRQTLLFTATVTDAVKALKDKPRAEGKLPVFLHQVDAGVDQIAIPKTLSTMYVFVPSYV 240

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  L   L   +      ++F N+      L   L K  F V ++H  + Q  R   L 
Sbjct: 241 KEAYLTSILKLPKYEESTAVVFVNRTMTAEVLRRMLRKLEFKVASLHSEMPQTERTNSLH 300

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G  ++++A+D+A+RGLDIP V  V NFD+P   +++IHR+GRT RAGR G A +++
Sbjct: 301 RFKAGAARILIATDVASRGLDIPTVELVVNFDIPADPDDFIHRVGRTARAGRKGDAISII 360

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNG--DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
            ++DI+ I++IE+ I KK++ L G  D   +N  L+K   A     ++   +      F 
Sbjct: 361 GEKDIERIESIEERINKKMELLEGVDDDKVINDSLQKATTA-----KREAMLDMDKESFG 415

Query: 408 RRKKNYSSQKS 418
            R+K    +++
Sbjct: 416 ERRKVNKKKRA 426


>gi|304415003|ref|ZP_07395797.1| ATP-dependent RNA helicase specific for 23S rRNA [Candidatus
           Regiella insecticola LSR1]
 gi|304283089|gb|EFL91508.1| ATP-dependent RNA helicase specific for 23S rRNA [Candidatus
           Regiella insecticola LSR1]
          Length = 464

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 131/368 (35%), Positives = 195/368 (52%), Gaps = 8/368 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L PK +  +   GY   TPIQ  T+P +L+  DV   A+TG+GKTA+F + +L  +    
Sbjct: 12  LPPKQLANLNALGYSSMTPIQAATLPAILKGKDVRAQAKTGSGKTAAFGIGLLDKIAV-- 69

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLERGADVL 126
               + + LIL PTRELA Q++    +  +       L + G      Q   L      +
Sbjct: 70  -EQFVTQALILCPTRELADQISKELRRLARFTQNIKILTLCGGQSIGCQLYSLVHAPHFV 128

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGRI +H  +  L++ N+++LV+DEADRMLDMGF   I NI    P TRQTLLFSAT
Sbjct: 129 VGTPGRIQEHLRKHTLVLTNLKVLVLDEADRMLDMGFNDAIDNIIDYAPKTRQTLLFSAT 188

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             D ++++S      P     +   S  +         Y   ++K   L   +       
Sbjct: 189 YPDSIEQISNRIQHQPL----SVVVSPQKNETAIEQLFYESTNEKRLPLLIKILKHYQPD 244

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + ++FCN K +   L  +L+    SV A+HG++DQ  R ++   F   + +++VA+D+AA
Sbjct: 245 SCLVFCNTKLDCQRLYQALKSCQMSVLALHGDLDQHERDQVWVRFANHSCRILVATDVAA 304

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V NF+V    E YIHRIGRTGRAG  G A TL   +++    AIE  ++ 
Sbjct: 305 RGLDIKQLALVVNFEVAFDPEVYIHRIGRTGRAGIGGCAVTLCTPQEMHRALAIEDYLQT 364

Query: 367 KVDWLNGD 374
           K+ WL+ +
Sbjct: 365 KLTWLSPE 372


>gi|307728119|ref|YP_003905343.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307582654|gb|ADN56052.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
          Length = 467

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 144/405 (35%), Positives = 211/405 (52%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P  +  +   GYV+ TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 11  FSQLPLPPAALANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + ++L PTRELA QV     +  +       L +  G P   Q   LE 
Sbjct: 71  LDA---RNFAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  RG L + ++  LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 128 GAHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVKQCPKERQTL 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K+S+ F     R       +            Y     +      LL +
Sbjct: 188 LFSATYPEGIVKLSQQF----LRNPKEVKLAERHDNTKIRQRFYEVTEDERLHAVGLLLN 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 244 HYRPVSTIAFCNTKQQCRDLLEVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  +  IE
Sbjct: 304 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGGIE 363

Query: 362 KLIEKKVDWLN-GDLSS-----LNPPLEKIDIAQHNHARKNNPIP 400
           +  +++V+W    +L++     L PP+E + I      RK    P
Sbjct: 364 QAQKREVEWHKLSELTATSNEPLLPPMETLQIL---GGRKEKIRP 405


>gi|290996658|ref|XP_002680899.1| predicted protein [Naegleria gruberi]
 gi|284094521|gb|EFC48155.1| predicted protein [Naegleria gruberi]
          Length = 452

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 130/423 (30%), Positives = 206/423 (48%), Gaps = 14/423 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
            F  +     +     +  + +PT IQ +  P+V+  +D+ G+A+TG+GKT +F+LP  M
Sbjct: 30  QFNHINFPHFIQNQFKEMNFKEPTAIQKQAWPIVMSGNDMIGLAETGSGKTLAFLLPGLM 89

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-------TVALLIGGIPF 112
             + +K   +   P  +IL PTRELA Q+    E +   +          +A L GG   
Sbjct: 90  HVLAQKELKKGDGPIMVILTPTRELAIQIHGACENFCNAFVPDSKDRALKIACLYGGEVR 149

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           + Q K+      V+I TPGR+LD    G   M     LV+DEADRMLDMGF P I  ITS
Sbjct: 150 KTQIKECRSKPQVIIATPGRLLDFLQAGITNMKRCSYLVLDEADRMLDMGFNPQISQITS 209

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFL---QNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
            V   RQTL FSAT    +Q ++ +++   +    + + +  ++A            +  
Sbjct: 210 QVTPDRQTLFFSATWNRSVQSMAMSYVSKAEPHFIVNIGSIETSANHRVKQSFLFIQESD 269

Query: 230 K--KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
           K  +   L   L         ++FC  KK    +   L + G+   +IHG   Q  R  +
Sbjct: 270 KIARLTDLLDKLIKNPEDCRTLVFCKTKKRTDVVTERLREAGWPSLSIHGERKQEEREWV 329

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L  F+ G   ++VA+D+AARGLD+ +V +V N+D+P+  ++YIHRIGRTGRAG+ G + +
Sbjct: 330 LEEFRSGKTPILVATDVAARGLDVENVKYVINYDMPHEIDSYIHRIGRTGRAGKEGNSVS 389

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
               ED++    + K++E+    +   L  L     K         ++     +  T   
Sbjct: 390 FFTPEDVQLCTPLIKVLEEAEQDVPDKLVKLRDLSTKSHGDLSIKEQRQKDKIEMLTEKK 449

Query: 408 RRK 410
           +RK
Sbjct: 450 KRK 452


>gi|255572248|ref|XP_002527063.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223533568|gb|EEF35307.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 650

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 137/393 (34%), Positives = 209/393 (53%), Gaps = 18/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA++ L   +   +    YVKPTP+Q   IP+ L   D+   AQTG+GKTA+F  P+++
Sbjct: 189 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIIS 248

Query: 62  ILEKGRA----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
            + K +           R+  P  LIL PTREL+ Q+ +   K+     + V +  GG P
Sbjct: 249 GIMKMQGQSAQRPLRGARMVYPLALILSPTRELSMQIHEEARKFSYQTGVKVVVAYGGAP 308

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q ++LERG D+L+ TPGR++D   R ++ +  +  L +DEADRMLDMGF P I+ I 
Sbjct: 309 INQQLRELERGVDILVATPGRLVDLLERARVSLQMVRYLALDEADRMLDMGFEPQIRKIV 368

Query: 172 SLVPFTRQ----TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
                 R     T+LFSAT   E+Q+++ +FL N   + V    S+ + I          
Sbjct: 369 EQNDMPRPGARQTMLFSATFPKEIQRLATDFLFNYIFLAVGRVGSSTDLIIQRVEFVQES 428

Query: 228 YSKKCALLQQLLQSQDTMKN----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
             +   +     Q  + ++      ++F   KK   +L H L   GF   +IHG+  Q+ 
Sbjct: 429 DKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLYVNGFPATSIHGDRSQQE 488

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L +F+ G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G
Sbjct: 489 REQALRSFRSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 548

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
            A     + +     A+  L+++    +   LS
Sbjct: 549 LATAFFNEGNASLAMALADLMQESNQEVPAWLS 581


>gi|145493178|ref|XP_001432585.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399698|emb|CAK65188.1| unnamed protein product [Paramecium tetraurelia]
          Length = 564

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 144/436 (33%), Positives = 224/436 (51%), Gaps = 5/436 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L L+  +V A  D GY  PT +Q K IP+++   DV   + TG+GKTA+F+LP++ 
Sbjct: 117 EFHQLKLNKALVKACHDQGYTHPTNVQAKIIPIIMNGKDVLASSCTGSGKTAAFLLPIMQ 176

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                   ++  + LI+ PTRELA Q  + FEK  K  N T AL+IG +P + Q  +L +
Sbjct: 177 RF-GNLKNLQYSKALIILPTRELALQCFEMFEKLNKYANCTAALVIGAVPIQQQETELRK 235

Query: 122 GADVLICTPGRILD-HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR +D   N   L + NIEILV DEADR+++MGF   I+ I       RQT
Sbjct: 236 YPDIIIATPGRTVDLLTNSSSLEIQNIEILVFDEADRLMEMGFEKEIRQILQATSKDRQT 295

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SAT+   ++++S   L NP ++ V+     A  ++   +   +            L 
Sbjct: 296 VLISATLNATVKQLSLLALNNPIKVNVDFVGGLAYGLKQYLLRIRSNQDSDREATLITLL 355

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  IIF   K +   L   L     S C +HGN+ Q+ R++   +FKEG  Q ++
Sbjct: 356 KTKFKEKTIIFVKTKHDCHRLAIVLGFLDMSSCELHGNLSQQQRIQAYEDFKEGKFQFLL 415

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARGLD+ DV  V N+++P     YIHR+GRT R G  G + T+  + ++      
Sbjct: 416 ATDLAARGLDLTDVKAVINYEIPYEVTRYIHRVGRTARIGAQGISVTICLENEVVKFK-- 473

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
            K+I +    L   ++  N   +     Q    +    I ++    + RK    +QK  I
Sbjct: 474 -KMIRQSKQQLFKMIADTNKVRQMRRQIQQLEPQIRKVIKEEVAEMEVRKTEMMTQKGEI 532

Query: 421 PLKESEKISKLQQDIQ 436
           P++ESE    + +  +
Sbjct: 533 PMEESEDDDNIPEPKK 548


>gi|326491449|dbj|BAJ94202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 674

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 136/389 (34%), Positives = 216/389 (55%), Gaps = 10/389 (2%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-PR 74
           +  AG+  PTPIQ ++ P+ L   DV  IA+TG+GKT  ++LP    +++ +   R  P 
Sbjct: 27  IQRAGFPSPTPIQAQSWPIALLNQDVVAIAKTGSGKTLGYLLPGFMHIKRMQNSTRSGPT 86

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTRELA Q+ +   K+G++  ++   L GG P   Q + LERG DV++ TPGR+ 
Sbjct: 87  VLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRDLERGVDVVVATPGRLN 146

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D     K+ +  +  LV+DEADRMLDMGF P I+ I   +P  RQTL+++AT   E++++
Sbjct: 147 DILEMRKISLKQVSYLVLDEADRMLDMGFEPQIRKIVRDIPSGRQTLMYTATWPKEVRRI 206

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           ++  L +P ++ + +                   S+K   L+Q+L+S D+  + I+    
Sbjct: 207 ADELLVHPVQVTIGSVDELVANKAITQHVEVITPSEKLRRLEQILRSHDSG-SKILIFCT 265

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
            K + +       + F   AIHG+  Q  R K+LS F+ G   ++VA+D+AARGLDI D+
Sbjct: 266 TKRMCDQLSRTLNRQFGAAAIHGDKSQNEREKVLSQFRSGRAPILVATDVAARGLDIKDI 325

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
             V N+D P   E+Y+HRIGRTGRAG  G A+T +  +D K+   + K++E     +  +
Sbjct: 326 RVVINYDFPTGVEDYVHRIGRTGRAGATGLAYTFLCDQDSKYASDLIKILEGADQDVPPE 385

Query: 375 LSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           L  +        +++    RK N    +S
Sbjct: 386 LLDM--------VSRGGRGRKRNKWAARS 406


>gi|298695355|gb|ADI98577.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 487

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 131/424 (30%), Positives = 215/424 (50%), Gaps = 14/424 (3%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
            G+ +PTPIQ  +IP  LQ  D+ G AQTGTGKT +F +P++  +       +  ++LIL
Sbjct: 1   MGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVG----KQGVQSLIL 56

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QVA+   ++ +   + V  + GG+P E Q K L++G  +++ TPGR++DH N
Sbjct: 57  APTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLN 116

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           R  L  + I  L++DEAD M++MGFI  ++ I   +P  ++  +  +    +  +     
Sbjct: 117 RRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQ 176

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
                +I     +  ++     F     +  K               +  I+F   K+ V
Sbjct: 177 FMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFT--NFLDVHQPELAIVFGRTKRRV 234

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             L  +L  +G+    +HG+I Q  R+++L  FK   I ++VA+D+AARGLDI  V HV+
Sbjct: 235 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 294

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           NFD+P   E+Y HRIGRTGRAG+ G A T V   ++ +I  IE    +K       +S+L
Sbjct: 295 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRK-------MSAL 347

Query: 379 NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQEN 438
            PP  K ++ Q         +    +     +    S +      + + ++ L Q++ E 
Sbjct: 348 RPPHRK-EVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVDLVAALLQELVEA 406

Query: 439 DADS 442
           + + 
Sbjct: 407 NDEV 410


>gi|296807019|ref|XP_002844169.1| ATP-dependent RNA helicase DED1 [Arthroderma otae CBS 113480]
 gi|238843652|gb|EEQ33314.1| ATP-dependent RNA helicase DED1 [Arthroderma otae CBS 113480]
          Length = 680

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 131/397 (32%), Positives = 204/397 (51%), Gaps = 23/397 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+  
Sbjct: 198 TFTNPPLDDHLISNIKLASYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILS 257

Query: 60  --------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105
                               GR R   P +LIL PTREL +Q+ D   K+     +   +
Sbjct: 258 QAFQNGPSPAPTQQGGQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCV 317

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P
Sbjct: 318 VYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEP 377

Query: 166 YIQNITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
            I+ I            QTL+FSAT   ++Q ++ +FL++   + V    ST+E I    
Sbjct: 378 QIRRIVEGEDMPPVAGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKV 437

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
                   +        +         +IF   K+   +L   L  Q F   AIHG+  Q
Sbjct: 438 EYVEDADKRSV---LLDILHTHGAGLTLIFVETKRMADSLSEFLINQHFPATAIHGDRTQ 494

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG 
Sbjct: 495 RERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGN 554

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            G +     + +   +  + +L+++    +   L ++
Sbjct: 555 TGISTAFFNRGNRGVVRDLIELLKEAHQEVPSFLENI 591


>gi|221113161|ref|XP_002160326.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX41
           [Hydra magnipapillata]
          Length = 605

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 123/395 (31%), Positives = 206/395 (52%), Gaps = 19/395 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+     ++  +       PTPIQ++ +P VL   D+ GIA TG+GKT  F LP++  
Sbjct: 167 FKDMKFPRSILQCLKRKDIKSPTPIQMQGLPTVLSGRDMIGIAFTGSGKTLVFTLPIVMF 226

Query: 63  LEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGIP 111
             +        +   P  L++ P+RELA Q  D   ++ ++  +       + L IGG  
Sbjct: 227 CVEQEKVLPFRKGEGPYGLLIAPSRELAKQTYDIILEFSESLRMDGAPTLKILLCIGGTS 286

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            + Q + ++ G  +++ TPGR++D  N+  + ++    L +DEADRM+DMGF   ++ I 
Sbjct: 287 VKDQAENIKHGVHIVVATPGRLMDLLNKKLITLDVCRFLCLDEADRMIDMGFEDDVRTIF 346

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLLFSATM  ++Q     F ++     V      A       +       ++
Sbjct: 347 SYFKGQRQTLLFSATMPKKIQN----FARSALVQPVTVNVGRAGAASLDIIQEVEYVKQE 402

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             +L  L   Q T    +IF  +K +V ++   L  +G    AIHG+  Q  R + ++ F
Sbjct: 403 EKILFLLKCLQKTAPPVLIFAEKKSDVDDIHEYLLLKGVEAVAIHGDKAQEERHRSVTQF 462

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +E    ++VA+D+A++GLD P++ HV N+D+P+  ENY+HRIGRTGR+G+ G A T + K
Sbjct: 463 RERKKDVLVATDVASKGLDFPNIQHVINYDMPDDIENYVHRIGRTGRSGKTGYATTFINK 522

Query: 352 E-DIKHIDAIEKLI---EKKVDWLNGDLSSLNPPL 382
             +   +  ++ L+   ++KV     ++ S +P L
Sbjct: 523 NCEESVLMDLKHLLIEAKQKVPLCLAEMESKDPYL 557


>gi|218188023|gb|EEC70450.1| hypothetical protein OsI_01481 [Oryza sativa Indica Group]
          Length = 512

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 125/391 (31%), Positives = 199/391 (50%), Gaps = 8/391 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA   L P+V+      G+ +P+PIQ    P +L   D  GIA TG+GKT +F +P L 
Sbjct: 95  SFAATALPPQVLDCCK--GFERPSPIQAYAWPYLLDGRDFIGIAATGSGKTIAFGVPALM 152

Query: 62  ILEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            + +       +  +PR L+L PTRELA Q+AD   + G    ++   L GG     Q  
Sbjct: 153 HVRRKMGEKSAKKGVPRVLVLSPTRELAQQIADVLCEAGAPCGISSVCLYGGTSKGPQIS 212

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G D++I TPGR+ D    G   +N++  +V+DEADRMLDMGF P ++ I S     
Sbjct: 213 ALKSGVDIVIGTPGRMKDLIEMGICRLNDVSFVVLDEADRMLDMGFEPEVRAILSQTASV 272

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRI--EVNTPSSTAETIEHCFVATYAQYSKKCALL 235
           RQ ++FSAT    + ++++ F+          +   +    +         +      + 
Sbjct: 273 RQMVMFSATWPPAVHQLAQEFMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRSRDSRLVA 332

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 +      ++F   K+    +   L+++G+S  ++HG+  Q  R K LS FKEG+
Sbjct: 333 LLDKYHKAQRNRVLVFVLYKREATRVETMLQRRGWSAVSVHGDKAQHDRTKALSLFKEGS 392

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             LM+A+D+A+RGLDIPDV  V N+  P   E+Y+HRIGRTGRAG+ G A T   +E+  
Sbjct: 393 CPLMIATDVASRGLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTFFTQENKG 452

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
               +  ++ +    +   L+     ++K +
Sbjct: 453 LAGELVNVLREAGQVVPPALTKFGTHVKKKE 483


>gi|126173490|ref|YP_001049639.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125996695|gb|ABN60770.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 411

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 166/418 (39%), Positives = 235/418 (56%), Gaps = 14/418 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L+ K+V  +   G+  PTPIQ++ IP +L + DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFSVLSLNSKLVNTLASLGFESPTPIQLEAIPAILAKRDVMAGAQTGTGKTAAFALPIL 60

Query: 61  TI-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                    +    V+  R L+L PTRELA QV  +F KY K  ++ V +  GG+  +AQ
Sbjct: 61  HHLLALSPLQELTAVKPIRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDAQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
                 G DVLI TPGR+LDH  +G L +  + +LV DEADRMLDMGF+  IQ +   VP
Sbjct: 121 VAVFNAGIDVLIATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT+   +  +S+  L++PK IEV   ++TA  IE    A  A    +    
Sbjct: 181 SDRQTLLFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDADRKTELVSH 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                        +IF   K+ V  L   L K      A HG++ Q +R K+L  FK+G 
Sbjct: 241 L---VRSKNWHQVLIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQGK 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           IQ++VA+D+AARGLDI ++ +V NF++P  AE+YIHRIGRTGRAG  G A TL ++ED  
Sbjct: 298 IQVLVATDVAARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDAL 357

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            ++ +E +++K++   WL G      P   K++     + +       K      +K+
Sbjct: 358 LLEEVEVVLDKRLPQQWLPG----FEPDFNKMETEPRRNGKAAQKQRAKKRALGGKKR 411


>gi|294900795|ref|XP_002777119.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
           50983]
 gi|239884576|gb|EER08935.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
           50983]
          Length = 967

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 128/393 (32%), Positives = 196/393 (49%), Gaps = 28/393 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  +  A+   GY +PTPIQ K IP +L   DV  +A+TG+GKTA+FV+PM   
Sbjct: 33  FQTMGLSDPLFKAIQKMGYNQPTPIQRKAIPAILGGSDVVAMARTGSGKTAAFVIPM-IQ 91

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + KG + V   R +IL PTRELA Q        GK  +L + L++GG   E+Q  +L   
Sbjct: 92  ILKGHSEVVGARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVGGHSMESQFDRLSSN 151

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLICTPGR++ H     L +  ++ +V DEADR+ +MGF   +Q+I    P +RQ LL
Sbjct: 152 PDVLICTPGRLVHHMVEADLSLQRVQYIVFDEADRLFEMGFADDMQSILKATPPSRQCLL 211

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK----------- 231
           FSAT+  +L + S   L++     +        +        Y     K           
Sbjct: 212 FSATLPSQLTQFSRAGLRSESTEFIRLDVEHTISDTLDLWFLYTTADSKPAALVALLRKL 271

Query: 232 ----------------CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
                                +  +        I+F   + NV      L + G S   I
Sbjct: 272 QSMGNKSTGDATGVAGVEGKSKGGKKGARSSKTIVFVATRHNVEFFASLLTQVGISNAPI 331

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           +G++DQ  R   LS F+ G   +++ +D+AARG+DIP + +V N+D P+ ++ ++HR GR
Sbjct: 332 YGSMDQTQRTSSLSKFRSGKASVLLVTDVAARGIDIPQLDYVINYDFPSSSKLFVHRCGR 391

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           T RAG  G   +LV  +D+ +   +   + +K+
Sbjct: 392 TARAGAKGLCASLVTHDDMPYAVELMLFLGRKL 424


>gi|224089849|ref|XP_002308835.1| predicted protein [Populus trichocarpa]
 gi|222854811|gb|EEE92358.1| predicted protein [Populus trichocarpa]
          Length = 556

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 122/376 (32%), Positives = 209/376 (55%), Gaps = 6/376 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           ++ ++LG+S ++V ++   G  K  PIQ   +   +Q  D+ G A+TGTGKT +F +P+ 
Sbjct: 67  LEISNLGISKEIVNSLAKKGITKLFPIQKAVLEPAMQGKDMFGRARTGTGKTLAFGIPIL 126

Query: 60  --LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             +    K   + R P  +++ PTRELA QV   F     + +       GG+P  +Q +
Sbjct: 127 DKIIEFNKQHGKGRNPLAMVMAPTRELARQVQKEFHDSAPSLDTICL--YGGVPISSQMR 184

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +LE G DV++ TPGRI+D   RG L ++ I+ +V+DEAD+ML +GF+  I+ I S +P  
Sbjct: 185 ELEYGVDVVVGTPGRIIDLMKRGSLNLSEIKYVVLDEADQMLGVGFVDDIETILSRLPKK 244

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R ++ FSATM   ++++   +L++P  I++   S           +  +    K ++L  
Sbjct: 245 RHSMCFSATMPSWIKQLVRKYLKDPLTIDLVGDSDRKLADGITLYSIASDMYAKASILGP 304

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+         I+F   K++   L +++ K      A+HG+I Q  R + LS F+EG   
Sbjct: 305 LITEHAKGGKCIVFTETKRDADRLAYAMAKNHK-CEALHGDISQNVRERTLSGFREGHFN 363

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+P+V  + ++ +P  +E ++HR GRTGRAG+ G A  +  ++D + +
Sbjct: 364 ILVATDVAARGLDVPNVDLIIHYALPRCSETFVHRSGRTGRAGKKGTAILIYTQDDARQV 423

Query: 358 DAIEKLIEKKVDWLNG 373
             IE+    +   L  
Sbjct: 424 KLIERDTGCRFSELPK 439


>gi|72548684|ref|XP_843415.1| ATP-dependent RNA helicase [Leishmania major strain Friedlin]
 gi|323363932|emb|CBZ12938.1| putative ATP-dependent RNA helicase [Leishmania major strain
           Friedlin]
          Length = 923

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 122/393 (31%), Positives = 188/393 (47%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFADL + P +   +   GY KPTP+Q   IP+ L   D+   AQTG+GKTA+F++P++ 
Sbjct: 471 DFADLLVEPALAANIERCGYKKPTPVQRYGIPVALSGSDLMACAQTGSGKTAAFLIPVVQ 530

Query: 62  ILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +        R R   P  L+L PTRELA Q+ D   K   N ++   ++     +    
Sbjct: 531 YMLVHGVSPARQRKSYPIALVLAPTRELAVQIFDEVRKLTFNTDIFYDVV-----YGGTR 585

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI------QNI 170
                  D+L+  PGR+ D FN   L  + I+ L++DEADRML+MGF   I      +  
Sbjct: 586 YPQRFEQDILVACPGRLRDMFNEEYLSFSAIKFLILDEADRMLEMGFEEQIEELVASRYT 645

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQT +FSAT    +  +++ +L+    +       +        +       K
Sbjct: 646 DMPTVDDRQTFMFSATFPQRILNLAKRYLRRKYYLLTVGRVGSTTKNITQTIEHVPDNEK 705

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
               L Q++   +     +IF   KK   ++   L ++G S   IHG+  Q+ R   L +
Sbjct: 706 MD-RLLQIIYGHEMSDMVLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALED 764

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK+    ++VA+D+A+RGLDIPDV HV  FD+P   ++Y HRIGRTGRAG  G A     
Sbjct: 765 FKQKVTPILVATDVASRGLDIPDVAHVVQFDLPQEMDDYTHRIGRTGRAGNKGIATAFYN 824

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
           + + +    + K   +    +          +E
Sbjct: 825 RNNRRLALDLHKYFSEHGQEIPKWFQQEAELVE 857


>gi|70728428|ref|YP_258177.1| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens Pf-5]
 gi|68342727|gb|AAY90333.1| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens Pf-5]
          Length = 496

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 211/389 (54%), Gaps = 11/389 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ + +   L   D  G AQTGTGKTA+F++ ++T 
Sbjct: 107 FHDFKLAPELMHAIQDLGFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLVSIITQ 166

Query: 63  ----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ-NK 117
                      +  PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q   
Sbjct: 167 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKH 226

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG + ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 227 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 286

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT T+++  +++ +  +P  +E+   +  +  +E    A       K    
Sbjct: 287 SERQTLLFSATFTEDVMNLAKQWTTDPAIVEIEAENVASANVEQHIYAVAGADKYKLLYN 346

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 347 L---VTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 403

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 404 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 463

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
            + +IE L+ +K+       + L  P+E+
Sbjct: 464 QLPSIEALLGRKIS-CEMPPAELLRPVER 491


>gi|330994757|ref|ZP_08318679.1| Cold-shock DEAD box protein A-like protein [Gluconacetobacter sp.
           SXCC-1]
 gi|329758018|gb|EGG74540.1| Cold-shock DEAD box protein A-like protein [Gluconacetobacter sp.
           SXCC-1]
          Length = 376

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 122/367 (33%), Positives = 191/367 (52%), Gaps = 4/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ +GL  +VV A+   G   P+ IQ   IP V+   DV   A TG+GKT +F  P+++
Sbjct: 7   TFSGMGLDGRVVAALARMGLQAPSAIQGAVIPPVMAGRDVEARAGTGSGKTVAFAAPIVS 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L          R L+L PTRELA Q+A       +   L V    GG    AQ + L  
Sbjct: 67  MLMARETDNSRVRCLVLAPTRELAGQIAGVLRGLARGGGLRVMQATGGTARVAQARTLAD 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D  + G+L ++ + I V+DEADRMLD GF   +  + + +P   QTL
Sbjct: 127 GTAIVVGTPGRVTDLVHGGELDLSAVGIFVLDEADRMLDPGFAEEMLALAAALPPRHQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   + +++   L  P R+ +    + A  I    +    ++  +  L       
Sbjct: 187 LFSATLPPAMAELAARLLHRPTRVSMAVEDAPAPRIAQYAIFVPMRHKTQATLACLRQYG 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +    +   V     +L        AIHG+  Q  R ++L +F++G + ++VA
Sbjct: 247 TQRVMVFVRTRQEADGVARAISALVP----AIAIHGDHSQARRERMLRDFRQGRVGVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARG+DI DV  V N D+P + E+Y+HRIGRT RAGR G A  L A E+ + +  IE
Sbjct: 303 TDVMARGIDIDDVALVINHDIPPQPESYVHRIGRTARAGRRGVAVALCAPEERQALREIE 362

Query: 362 KLIEKKV 368
           +L  +++
Sbjct: 363 RLTGQRI 369


>gi|186474785|ref|YP_001856255.1| ATP-dependent RNA helicase DbpA [Burkholderia phymatum STM815]
 gi|184191244|gb|ACC69209.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 463

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 145/407 (35%), Positives = 205/407 (50%), Gaps = 21/407 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L LS  V+  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 8   FSELPLSQAVLANLTQLGYADMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + ++L PTRELA QV     +  +       L +  G P   Q   LE 
Sbjct: 68  LDA---RRYAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  RG L ++ +  LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 125 GAHIVVGTPGRIMDHLERGSLSLDALNTLVLDEADRMLDMGFFDDIAKVARQCPKERQTL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K+S+ F     R                    Y     +       L +
Sbjct: 185 LFSATYPEGIAKLSQQF----LRNPKEVKLEERHDDSKIRQRFYEVTEDERLHAVGQLLN 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K    +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 241 HYRPVSTIAFCNTKNQCRDLLDVLCAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L +  ++  + AIE
Sbjct: 301 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGAIE 360

Query: 362 KLIEKKVDWLNGDLSSLN--------PPLEKIDIAQHNHARKNNPIP 400
           +   + V+W    L+ LN        PP+E + I      RK    P
Sbjct: 361 EAQGRDVEWHP--LAELNAASDEPLLPPMETLQIL---GGRKEKIRP 402


>gi|321261169|ref|XP_003195304.1| hypothetical protein CGB_G4440W [Cryptococcus gattii WM276]
 gi|317461777|gb|ADV23517.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
          Length = 615

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 134/410 (32%), Positives = 204/410 (49%), Gaps = 22/410 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD+ +   ++  +   G  +PTPIQ++ +P      D+ GIA TG+GKT +FVLP +  
Sbjct: 182 FADMKIPKPILSYLQAKGIKRPTPIQMQGLPTAFSGRDMIGIAFTGSGKTLAFVLPAIMA 241

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNF-------EKYGKNYNLTVALLIGGI 110
             +  ARV       P  LI+ P+RELA Q  +         ++ G    L   L IGGI
Sbjct: 242 ALEMEARVPFVRGEGPVGLIICPSRELARQTYEQCVAVCAVLKESGNYPELRSLLCIGGI 301

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q   L +G  V++ TPGR++D  ++ KL  +N + L +DEADRM+DMGF   +++I
Sbjct: 302 SMADQADVLNKGVHVVVATPGRLIDMLDKRKLNADNCKYLCMDEADRMIDMGFEEDVRSI 361

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S   + RQTLLFSATM  ++Q     F Q      +      A       +       +
Sbjct: 362 MSHFKYQRQTLLFSATMPRKIQD----FAQQSLINPILVNVGRAGAANMDVIQEVEYVKQ 417

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    IIF + K  V ++   L  +G    AIHG+  Q  R   + +
Sbjct: 418 EAKMVYLLECLQKTPPPVIIFSDNKNEVDDIQEYLLLKGVEAVAIHGSKTQEEREYAIRS 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   +MVAS +A++GLD  ++ HV  + +P   E+Y+H IGRTGR+G+ G A T V 
Sbjct: 478 FKTGAKDVMVASGVASKGLDFNEIQHVIVYSMPKEIEDYVHEIGRTGRSGKTGLATTFVN 537

Query: 351 KEDIKH-IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
               +  +  ++ L+ +    +   L S++ P      A H    K  PI
Sbjct: 538 MNTSEQTLLDLKYLLMEAKQKIPDFLLSIDDPR-----AAHGGGLKGCPI 582


>gi|226506726|ref|NP_001141599.1| hypothetical protein LOC100273717 [Zea mays]
 gi|224032233|gb|ACN35192.1| unknown [Zea mays]
          Length = 429

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 94/376 (25%), Positives = 159/376 (42%), Gaps = 3/376 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 50  FRDFLLKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQ 109

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    +V                   + F KY     + V      I       K E  
Sbjct: 110 IDPVAGQVAALVLCHTRELAYQICHEFERFSKYLTEVKVAVFYGGVHIRKHKDLLKNECP 169

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L N    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 170 HIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 229

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  I V+  +              ++  K        L   
Sbjct: 230 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNR--KLNDLLDA 287

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L +  F    IH  + Q  R+    NFKEG  +++VA+
Sbjct: 288 LDFNQVVIFVKSVSRAAELNKLLCECNFPSICIHSGMTQEERLTSYKNFKEGHKRILVAT 347

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKHIDAIE 361
           DL  RG+DI  V  V N+D+P+ A+ Y+HR+GR GR G  G A T V+   D   ++ ++
Sbjct: 348 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQ 407

Query: 362 KLIEKKVDWLNGDLSS 377
           +  E  +  L   + +
Sbjct: 408 ERFEVDIKELPEQIDT 423


>gi|99032027|pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
 gi|99032028|pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
 gi|99032029|pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
 gi|99032030|pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
          Length = 434

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 205/368 (55%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++  V  +GY  PTPIQ  +IP++    D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 58  FTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSK 117

Query: 63  LEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L +    +    P+ +I+ PTRELA Q+ +   K+     L + ++ GG  F  QN+ + 
Sbjct: 118 LLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECIT 177

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V+I TPGR+LD  +R  +   +   +V+DEADRMLDMGF   ++ I + V    + 
Sbjct: 178 RGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEH 237

Query: 181 L--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
              +FSAT  +E+Q+++  FL+N   + +         ++     T  + +K     + +
Sbjct: 238 QTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQ----TIYEVNKYAKRSKLI 293

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               +     I+F   K+    L   L ++ F   +IHG+  Q  R + L +FK G++++
Sbjct: 294 EILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKV 353

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHI 357
           ++A+ +A+RGLDI ++ HV N+D+P++ ++Y+HRIGRTGR G +G+A +    E D    
Sbjct: 354 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIA 413

Query: 358 DAIEKLIE 365
             + K++E
Sbjct: 414 ADLVKILE 421


>gi|24584399|ref|NP_723899.1| vasa [Drosophila melanogaster]
 gi|12644110|sp|P09052|VASA1_DROME RecName: Full=ATP-dependent RNA helicase vasa, isoform A; AltName:
           Full=Antigen Mab46F11
 gi|7298204|gb|AAF53438.1| vasa [Drosophila melanogaster]
          Length = 661

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 205/368 (55%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++  V  +GY  PTPIQ  +IP++    D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 247 FTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSK 306

Query: 63  LEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L +    +    P+ +I+ PTRELA Q+ +   K+     L + ++ GG  F  QN+ + 
Sbjct: 307 LLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECIT 366

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V+I TPGR+LD  +R  +   +   +V+DEADRMLDMGF   ++ I + V    + 
Sbjct: 367 RGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEH 426

Query: 181 L--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
              +FSAT  +E+Q+++  FL+N   + +         ++     T  + +K     + +
Sbjct: 427 QTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQ----TIYEVNKYAKRSKLI 482

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               +     I+F   K+    L   L ++ F   +IHG+  Q  R + L +FK G++++
Sbjct: 483 EILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKV 542

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHI 357
           ++A+ +A+RGLDI ++ HV N+D+P++ ++Y+HRIGRTGR G +G+A +    E D    
Sbjct: 543 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIA 602

Query: 358 DAIEKLIE 365
             + K++E
Sbjct: 603 ADLVKILE 610


>gi|226291927|gb|EEH47355.1| ATP-dependent RNA helicase DBP4 [Paracoccidioides brasiliensis
           Pb18]
          Length = 814

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 120/458 (26%), Positives = 203/458 (44%), Gaps = 18/458 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL LS   +  +  + +   T IQ K +P  L+  D+ G A+TG+GKT +F++P+L +
Sbjct: 51  FADLPLSEASLDGLSASHFKTLTSIQAKALPHALKGRDILGAAKTGSGKTLAFLVPLLEL 110

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         L+L PTRELA Q+ +   K G++++ +  L+IGG   + + ++L R
Sbjct: 111 LYRKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHSFSAGLVIGGKSLQEEQERLGR 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +           N I++LV+DEADR++DMGF   +  I   +P  RQT+
Sbjct: 171 MNILVCTPGRMLQHMDQTAAFDTNRIQLLVLDEADRIMDMGFQNTVDAIVEHLPKERQTM 230

Query: 182 LFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT T ++      +             SS                 K   L   +  
Sbjct: 231 LFSATQTQKVSDLARLSLQDPEYISVHEAASSATPAKLQQNYIVTPLPEKLDTLWSFIRS 290

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S  +         ++   V       + G S+  +HG   Q +R+ I   F       + 
Sbjct: 291 SLKSKIMVFFSSGKQVRFVYESFRHMQPGISLLHLHGRQKQGARVDITKKFSVAKHACLF 350

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD P V  V   D P  A+ YIHR GRT R  R+G+A   +   +   +  +
Sbjct: 351 ATDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFLEPSEEAAM--L 408

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           ++L +KK+            P+EKI++         + +  ++  F      Y  QK+ I
Sbjct: 409 KRLEQKKI------------PIEKINVRTKKQQSIKHQL--QNMCFKDPALKYLGQKAFI 454

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
              +S  + K ++     D     +  ++     P+ +
Sbjct: 455 SYVKSIHVQKDKEVFVVKDLPLEAYAASLGLPGAPRIK 492


>gi|154282923|ref|XP_001542257.1| 2-isopropylmalate synthase [Ajellomyces capsulatus NAm1]
 gi|150410437|gb|EDN05825.1| 2-isopropylmalate synthase [Ajellomyces capsulatus NAm1]
          Length = 1466

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 148/449 (32%), Positives = 221/449 (49%), Gaps = 25/449 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L 
Sbjct: 306 SFQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILE 365

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++
Sbjct: 366 RLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKK 425

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 426 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 485

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+ + K+    L  P R+ V+    T  T+   FV       +K      +L 
Sbjct: 486 MLFSATMTNNVDKLIRVGLSRPVRLMVDAKKQTVGTLIQEFVRLRPGREEKRLGYLIVLC 545

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   KK    +       G  V  +HG++ Q  R+K + +F++G +  ++
Sbjct: 546 KNIYKDRVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRIKSVESFRDGKVSFLL 605

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA- 359
           A+D+A+RGLDI  V  V N++ P     Y+HR+GRT RAGR G+A TL A+ D K + A 
Sbjct: 606 ATDVASRGLDIKGVETVINYEAPQSHAIYLHRVGRTARAGRSGRACTLAAEPDRKVVKAA 665

Query: 360 -----------IEKLIE---------KKVDWLNGDLSSLNPPLEKIDIAQ--HNHARKNN 397
                      + +LIE         K  +        L    E+  +AQ      R +N
Sbjct: 666 VKTGRAQGAKIVSRLIETAEADKWAAKVEEMQEEVQEILREEKEEKQLAQAEMEVTRGSN 725

Query: 398 PIPQKSTGFDRRKKN-YSSQKSHIPLKES 425
            +  +     R K+  + S+K  +  K+ 
Sbjct: 726 LLNHEKEIMSRPKRTWFESEKEKLQAKQR 754


>gi|219668951|ref|YP_002459386.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
 gi|219539211|gb|ACL20950.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 443

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 126/438 (28%), Positives = 219/438 (50%), Gaps = 15/438 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+  ++V A+   G V+PT IQ  TIPL+L   DV G ++TG+GKT +++LP+L 
Sbjct: 9   SFQELGIQAELVEALAKEGIVQPTEIQKSTIPLILNNRDVAGQSETGSGKTLAYLLPVLQ 68

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKKL 119
            +++ +   +    L+L PT ELA QV    +   ++    +T A +IG +    Q +KL
Sbjct: 69  KIDRNKRENQ---VLVLTPTHELALQVQRQIQDLSRHLAATITSAAIIGNVNIARQIEKL 125

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +++ + GRIL+   + K+   +++ +V+DEAD++LD   I  ++ +        Q
Sbjct: 126 KEKPHIIVGSAGRILELIQKRKISAQSLKTIVLDEADQLLDERNIQTVKAVLKTAYKDSQ 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT++ +  + +  FL++P        +  A  +       +    +    L + L
Sbjct: 186 ILLFSATLSQDAIEQAAGFLKDPAVQ---RITMKATVVPTIIHQHFMCEQRDKLELLRKL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    +IF N+ + +      L   G    AI G   + +R + +++F+ G  QL+
Sbjct: 243 VRHLEPGRALIFINKTEEIEKTVERLSYHGLDAVAISGASQKENRRQAMADFRAGKTQLL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASDLAARGLDI ++ H+FN D+P   + Y+HR+GRTGRAG+ G A +LV + ++  +  
Sbjct: 303 VASDLAARGLDIKNITHIFNLDIPEEPQLYLHRVGRTGRAGQSGVAVSLVTQRELPLLHK 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK-----KNYS 414
           IE  ++  +         +    EK +  Q    R       K+    + K     K  +
Sbjct: 363 IENSLKISIPLRRLSFGKVIS--EKEEKGQQTRTRTKAGAGTKTETKAKAKPEAKTKTEA 420

Query: 415 SQKSHIPLKESEKISKLQ 432
             K+   +K   K  K +
Sbjct: 421 KAKTKTGVKAKTKPHKAK 438


>gi|304409413|ref|ZP_07391033.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307303771|ref|ZP_07583524.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304351931|gb|EFM16329.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306912669|gb|EFN43092.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 411

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 168/418 (40%), Positives = 234/418 (55%), Gaps = 14/418 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L+  +V  +   GY  PTPIQ++ IP +L + DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFSVLSLNSTLVNTLASLGYESPTPIQLEAIPAILAKRDVMAGAQTGTGKTAAFALPIL 60

Query: 61  TI-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                    +    VR  R L+L PTRELA QV  +F KY K  ++ V +  GG+  +AQ
Sbjct: 61  HHLLALSPLQELTAVRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDAQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
                 G DVLI TPGR+LDH  +G L +  + +LV DEADRMLDMGF+  IQ +   VP
Sbjct: 121 VAVFNAGIDVLIATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT+   +  +S+  L++PK IEV   ++TA  IE    A  A    +    
Sbjct: 181 SDRQTLLFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDADRKTELVSH 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                        +IF   K+ V  L   L K      A HG++ Q +R K+L  FK+G 
Sbjct: 241 L---VRSKNWHQVLIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQGK 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           IQ++VA+D+AARGLDI ++ +V NF++P  AE+YIHRIGRTGRAG  G A TL ++ED  
Sbjct: 298 IQVLVATDVAARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDAL 357

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            ++ +E +++K++   WL G      P   K+D     + +       K      +K+
Sbjct: 358 LLEEVEVVLDKRLPQQWLPG----FEPDFNKMDTEPRRNGKAAQKQRAKKRALGGKKR 411


>gi|269955581|ref|YP_003325370.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304262|gb|ACZ29812.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 605

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 139/412 (33%), Positives = 214/412 (51%), Gaps = 18/412 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FAD G+  ++V A+ D G   P PIQ  T+P+ LQ HD+ G A+TGTGKT  F +P+L
Sbjct: 68  VSFADFGVRQEIVDALTDVGITHPFPIQAMTLPVALQAHDIIGQAKTGTGKTLGFGIPLL 127

Query: 61  TILEKGRARVRM-------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPF 112
             +                P+ +++ PTRELA QVA +      +      + I  G  +
Sbjct: 128 NRVVAPGEPGWDELVAPGKPQAVVVAPTRELAVQVAGDLATASAHRPSLRVIQIYGGRAY 187

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E Q ++L+RGA+V++ TPGR++D  N+G L +   E +V+DEAD MLD+GF+P ++ I S
Sbjct: 188 EPQIEQLQRGAEVVVGTPGRMVDLLNQGHLNLLRAETIVLDEADEMLDLGFLPDVEKILS 247

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +P  R T+LFSATM   +  ++  ++  P  I    P     T+++     Y  ++   
Sbjct: 248 RLPAKRHTMLFSATMPGAVVSMARRYMSQPTHIRAADPDDEGVTVKNIKQVVYRAHALDK 307

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             +   L   +     I+F   K+    +   L  +GF+  AIHG++ Q +R + L   +
Sbjct: 308 IEVLARLLQAEGRGRSIVFARTKRTAAKVSDELRDRGFAAGAIHGDLGQGAREQALRALR 367

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G I ++VA+D+AARG+D+ DV HV N+  P     Y+HR+GRTGRAG  G A T V  +
Sbjct: 368 HGKIDVLVATDVAARGIDVDDVTHVVNYQCPEDERTYLHRVGRTGRAGNKGTAVTFVDWD 427

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           D+     I+K +E               P+E    + H  A  N P   K  
Sbjct: 428 DMPRWSLIDKALET----------GHPEPVETYSTSPHLFADLNIPAGTKGR 469


>gi|67970455|dbj|BAE01570.1| unnamed protein product [Macaca fascicularis]
          Length = 437

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 127/385 (32%), Positives = 192/385 (49%), Gaps = 16/385 (4%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++    +
Sbjct: 1   MKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLE 60

Query: 66  GRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGIPFEA 114
              R+       P  LI+ P+RELA Q     E Y +            AL IGG+  + 
Sbjct: 61  QEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKE 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I S  
Sbjct: 121 QMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYF 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTLLFSATM  ++Q     F ++     V      A       +       ++  +
Sbjct: 181 KGQRQTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKM 236

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +  L   Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  F+EG
Sbjct: 237 VYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG 296

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-D 353
              ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + K  D
Sbjct: 297 KKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACD 356

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL 378
              +  ++ L+ +    +   L  L
Sbjct: 357 ESVLMDLKALLLEARQKVPPVLQVL 381


>gi|316978689|gb|EFV61638.1| DEAD-box ATP-dependent RNA helicase 57 [Trichinella spiralis]
          Length = 627

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 109/433 (25%), Positives = 190/433 (43%), Gaps = 22/433 (5%)

Query: 2   DFADL--GLSPKVVCAVLDAGYVKPTPIQIKTIPLVL--QRHDVCGIAQTGTGKTASFVL 57
            F +L   L PK+V  V    +  PTPIQ++ IP++L  +  +V   A TG+GKT +F++
Sbjct: 178 SFEELYALLVPKLVQNVKALNFCAPTPIQMQAIPVLLAVKGREVMASAPTGSGKTLAFLI 237

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           P +  L        + R LI+EPT EL+ QV     K     N+ V L       E +N 
Sbjct: 238 PAVNFLLTECESENILRILIIEPTYELSKQVYLELLKLTDGLNVKVHLTSNAPQLEDENN 297

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             +   D+++ TP R++    + + L N   I  +   +                     
Sbjct: 298 FDKENFDIMVTTPNRLIYAQQQSQPLYNLNTIRWLIIDECDKLFESGDRGFRKQQCDTVK 357

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + LLFSAT + EL++  +  L +   + V   +S  ++++   V   +++ K  A   +
Sbjct: 358 IRRLLFSATFSYELEQWCKINLNDMVMVCVGARNSAVQSVKQELVFVGSEHGKVLA--LR 415

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  +      +IF   K     L +  +     +  IH ++ ++ R   +  F+ G   
Sbjct: 416 NMFIEGFTPPVLIFVQSKDRAEQLYNEFKFDEVKIDYIHSDLPKKERENTIKKFRRGDTW 475

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG----------------RTGRAGR 341
           +++ ++L  RGLD   V  V NFD P  + +YIHRIG                RTGRAGR
Sbjct: 476 ILICTELIGRGLDFKCVNLVINFDFPTSSISYIHRIGKVVCSVMPARRLYFLGRTGRAGR 535

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            G+A T   + D   + +I  +I+     +   +  L    +K+ +   + A K +PI +
Sbjct: 536 QGRALTFFTETDKLLLRSIGNIIQAAGCPVPDYILKLPKASKKVRMTIASSAPKRDPISE 595

Query: 402 KSTGFDRRKKNYS 414
             +  + R +  S
Sbjct: 596 VGSRRNDRYQTKS 608


>gi|322503130|emb|CBZ38214.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 917

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 122/393 (31%), Positives = 188/393 (47%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFADL + P +   +   GY KPTP+Q   IP+ L   D+   AQTG+GKTA+F++P++ 
Sbjct: 466 DFADLLVEPALAANIERCGYKKPTPVQRYGIPVALSGSDLMACAQTGSGKTAAFLIPVVQ 525

Query: 62  ILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +        R R   P  L+L PTRELA Q+ D   K   N ++   ++     +    
Sbjct: 526 YMLVHGVSPARQRKSYPIALVLAPTRELAVQIFDEVRKLTFNTDIFYDVV-----YGGTR 580

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI------QNI 170
                  D+L+  PGR+ D FN   L  + I+ L++DEADRML+MGF   I      +  
Sbjct: 581 YPQRFEQDILVACPGRLRDMFNEEYLSFSAIKFLILDEADRMLEMGFEEQIEELVASRYT 640

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQT +FSAT    +  +++ +L+    +       +        +       K
Sbjct: 641 DMPTVDERQTFMFSATFPQRILNLAKRYLRRKYYLLTVGRVGSTTKNITQTIEHVPDNEK 700

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
               L Q++   +     +IF   KK   ++   L ++G S   IHG+  Q+ R   L +
Sbjct: 701 MD-RLLQIIYGHEMSDMVLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALED 759

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK+    ++VA+D+A+RGLDIPDV HV  FD+P   ++Y HRIGRTGRAG  G A     
Sbjct: 760 FKQKVTPILVATDVASRGLDIPDVAHVVQFDLPQEMDDYTHRIGRTGRAGNKGIATAFYN 819

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
           + + +    + K   +    +          +E
Sbjct: 820 RNNRRLALDLHKYFSEHGQEIPKWFQQEAELVE 852


>gi|322495556|emb|CBZ30861.1| putative ATP-dependent RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 926

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 122/393 (31%), Positives = 188/393 (47%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFADL + P +   +   GY KPTP+Q   IP+ L   D+   AQTG+GKTA+F++P++ 
Sbjct: 475 DFADLLVEPALAANIERCGYKKPTPVQRYGIPVALSGSDLMACAQTGSGKTAAFLIPVVQ 534

Query: 62  ILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +        R R   P  L+L PTRELA Q+ D   K   N ++   ++     +    
Sbjct: 535 YMLVHGVSPARQRKSYPIALVLAPTRELAVQIFDEVRKLTFNTDIFYDVV-----YGGTR 589

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI------QNI 170
                  D+L+  PGR+ D FN   L  + I+ L++DEADRML+MGF   I      +  
Sbjct: 590 YPQRFEQDILVACPGRLRDMFNEEYLSFSAIKFLILDEADRMLEMGFEEQIEELVASRYT 649

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQT +FSAT    +  +++ +L+    +       +        +       K
Sbjct: 650 DMPTVDERQTFMFSATFPQRILNLAKRYLRRKYYLLTVGRVGSTTKNITQTIEHVPDNEK 709

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
               L Q++   +     +IF   KK   ++   L ++G S   IHG+  Q+ R   L +
Sbjct: 710 MD-RLLQIIYGHEMSDMVLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALED 768

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK+    ++VA+D+A+RGLDIPDV HV  FD+P   ++Y HRIGRTGRAG  G A     
Sbjct: 769 FKQKVTPILVATDVASRGLDIPDVAHVVQFDLPQEMDDYTHRIGRTGRAGNKGIATAFYN 828

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
           + + +    + K   +    +          +E
Sbjct: 829 RNNRRLALDLHKYFSEHGQEIPKWFQQEAELVE 861


>gi|321399692|emb|CAJ06994.2| putative ATP-dependent DEAD/H RNA helicase [Leishmania major strain
           Friedlin]
          Length = 592

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 126/382 (32%), Positives = 203/382 (53%), Gaps = 5/382 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           ++F+DL     +  A +DAG+ KPTPIQ  + P++L   D+ G+A+TG+GKT +F++P  
Sbjct: 145 LEFSDLVAPDAIHQAFMDAGFQKPTPIQSVSWPVLLNSRDIVGVAKTGSGKTMAFMIPAA 204

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNK 117
           +  + +        P  L+L PTRELA Q+     K        +   +  G P   Q +
Sbjct: 205 LHIMAQPPLQPGDGPIALVLAPTRELAVQIETETRKALTRVPSIMTTCVYGGTPKGPQQR 264

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G  V I TPGR++D        +  +  L +DEADRMLDMGF   I+ I S +   
Sbjct: 265 ALRAGVHVCIATPGRLIDLLETNCTNLLRVTYLTLDEADRMLDMGFEDQIRKICSQIRTD 324

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL+FSAT   E++ ++ +F ++  R+ + +    A    H  V     Y K    +++
Sbjct: 325 RQTLMFSATWPREIRNLAASFQKDFVRVHIGSEELVANADVHQHVFVVEGYHK-EEKMEE 383

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+     +  +    +K   +           +V AIHG+  Q SR  +L  F++    
Sbjct: 384 ILRQVGPQRVLVFVKTKKSCDILQDRLGRALRQTVLAIHGDKLQSSRDYVLDRFRKDERA 443

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED-IKH 356
           ++VA+D+AARGLDI D+  V N+D+P   E+Y+HRIGRTGRAG+ G A++ V+  D  K 
Sbjct: 444 ILVATDVAARGLDIKDLDVVVNYDMPLNIEDYVHRIGRTGRAGKTGDAYSFVSSADNSKT 503

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
           I  +  L+ +    ++ +L ++
Sbjct: 504 IRDLIDLLLRAKQEVSPELYAV 525


>gi|146101459|ref|XP_001469120.1| ATP-dependent RNA helicase [Leishmania infantum]
 gi|134073489|emb|CAM72220.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
          Length = 924

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 122/393 (31%), Positives = 188/393 (47%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFADL + P +   +   GY KPTP+Q   IP+ L   D+   AQTG+GKTA+F++P++ 
Sbjct: 473 DFADLLVEPALAANIERCGYKKPTPVQRYGIPVALSGSDLMACAQTGSGKTAAFLIPVVQ 532

Query: 62  ILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +        R R   P  L+L PTRELA Q+ D   K   N ++   ++     +    
Sbjct: 533 YMLVHGVSPARQRKSYPIALVLAPTRELAVQIFDEVRKLTFNTDIFYDVV-----YGGTR 587

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI------QNI 170
                  D+L+  PGR+ D FN   L  + I+ L++DEADRML+MGF   I      +  
Sbjct: 588 YPQRFEQDILVACPGRLRDMFNEEYLSFSAIKFLILDEADRMLEMGFEEQIEELVASRYT 647

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQT +FSAT    +  +++ +L+    +       +        +       K
Sbjct: 648 DMPTVDERQTFMFSATFPQRILNLAKRYLRRKYYLLTVGRVGSTTKNITQTIEHVPDNEK 707

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
               L Q++   +     +IF   KK   ++   L ++G S   IHG+  Q+ R   L +
Sbjct: 708 MD-RLLQIIYGHEMSDMVLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALED 766

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK+    ++VA+D+A+RGLDIPDV HV  FD+P   ++Y HRIGRTGRAG  G A     
Sbjct: 767 FKQKVTPILVATDVASRGLDIPDVAHVVQFDLPQEMDDYTHRIGRTGRAGNKGIATAFYN 826

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
           + + +    + K   +    +          +E
Sbjct: 827 RNNRRLALDLHKYFSEHGQEIPKWFQQEAELVE 859


>gi|27881976|gb|AAH44541.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog,
           yeast) [Danio rerio]
          Length = 487

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 99/382 (25%), Positives = 179/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 101 SFEELRLKPQLLQGVYAMGFNRPSKIQETALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 160

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++      + P+ L + PT ELA Q     E+ GK+Y     +         +  KL
Sbjct: 161 LSHVDP---ENKWPQCLCVSPTYELALQTGKVIEQMGKHYPEVQLVYAIRGNKLERGTKL 217

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +             +          ++ +    +   G       I  ++P T Q
Sbjct: 218 QEQIVIGTPGTVLDWCQKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPKTCQ 277

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  + +   ++  + +P  I++     T +TI+  +V   ++  K        +
Sbjct: 278 MLLFSATFEETVWNFAKRIVPDPNIIKLKREEETLDTIKQYYVICNSKEEK--FQALCNI 335

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L ++G  V  + G +    R  ++  F++G  +++
Sbjct: 336 YGAITIAQAMIFCHTRKTAGWLAGELSREGHQVALLSGEMQVEQRAAVIERFRDGKEKVL 395

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 396 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAINMVDSKF 455

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I+    KK++ L+ D
Sbjct: 456 SMNILNRIQDHFNKKIEKLDTD 477


>gi|224052974|ref|XP_002297644.1| predicted protein [Populus trichocarpa]
 gi|222844902|gb|EEE82449.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 136/393 (34%), Positives = 208/393 (52%), Gaps = 18/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA++ L   +   +    YVKPTP+Q   IP+ L   D+   AQTG+GKTA+F  P+++
Sbjct: 122 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISLTGRDLMACAQTGSGKTAAFCFPIIS 181

Query: 62  ILEKGRA----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
            + K +           R   P  LIL PTREL+ Q+ +  +K+     + V +  GG P
Sbjct: 182 GIMKMQDQSAQRPLRGARTVYPLALILSPTRELSMQIHEEAKKFSYQTGVKVVVAYGGAP 241

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q ++LERG D+L+ TPGR++D   R ++ +  I+ L +DEADRMLDMGF P I+ I 
Sbjct: 242 IHQQLRELERGVDILVATPGRLVDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIV 301

Query: 172 SLVPFTRQ----TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
             +         T+LFSAT   E+Q+++ +FL +   + V    S+ + I          
Sbjct: 302 EQMDMPPPGSRQTMLFSATFPKEIQRLASDFLASYVFLAVGRVGSSTDLIAQRVEFVQES 361

Query: 228 YSKKCALL----QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
             +   +     Q+    Q      ++F   KK   +L H L    F   +IHG+  Q+ 
Sbjct: 362 DKRSHLMDLLYAQRANGVQGKQDLTLVFVETKKGADSLEHWLCINNFPATSIHGDRSQQE 421

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G
Sbjct: 422 REQALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 481

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
            A     + +      + +L+++    +   LS
Sbjct: 482 LATAFFNEGNASMARPLSELMQEANQEVPAWLS 514


>gi|89099486|ref|ZP_01172362.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
 gi|89085872|gb|EAR64997.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
          Length = 479

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 143/391 (36%), Positives = 220/391 (56%), Gaps = 7/391 (1%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
            G+ + TPIQ +TIPL L   D+ G AQTGTGKTA+F +P++  ++       + + +I+
Sbjct: 1   MGFEEATPIQAETIPLSLANKDLIGQAQTGTGKTAAFGVPLIDKIDTS---KDVIQGIII 57

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QV++   K G      V  + GG     Q + L++   +++ TPGR+LDH  
Sbjct: 58  APTRELAIQVSEELYKIGYGKRARVLSIYGGQDINRQIRALKKPPHIIVGTPGRVLDHIK 117

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
           R  L ++N+   ++DEAD ML+MGFI  I++I + VP  RQTLLFSATM   +Q+++E F
Sbjct: 118 RKTLRLDNVHTAILDEADEMLNMGFIEDIESILASVPVERQTLLFSATMPAPIQRMAERF 177

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258
           +++P+ I V     T   IE           +    +   L +  + +  IIF   K+ V
Sbjct: 178 MRDPQIIRVKAKEMTVPLIEQ---FYVEVQERTKFDVLTRLLNIQSPELAIIFGRTKRRV 234

Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318
             L  +L  +GF    IHG++ Q  RM +L  FKEG+I ++VA+D+AARGLDI  V HV+
Sbjct: 235 DELAEALNLRGFLAEGIHGDLSQAKRMSVLRKFKEGSIDVLVATDVAARGLDISGVTHVY 294

Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL-NGDLSS 377
           NFD+P   E+Y+HRIGRTGRAG+ G A T +   +  ++  +E+  + K+  +    L+ 
Sbjct: 295 NFDIPQDPESYVHRIGRTGRAGKEGMAMTFITPREKSYLAVVERTTKSKMGKMVPPTLAE 354

Query: 378 LNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
                +K  + + + A   N +       D 
Sbjct: 355 ALEGQQKAAVDKISQAISANNLENYKEAADE 385


>gi|254565179|ref|XP_002489700.1| ATP-dependent RNA helicase [Pichia pastoris GS115]
 gi|238029496|emb|CAY67419.1| ATP-dependent RNA helicase [Pichia pastoris GS115]
 gi|328350119|emb|CCA36519.1| ATP-dependent RNA helicase DDX18 [Pichia pastoris CBS 7435]
          Length = 546

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 113/391 (28%), Positives = 197/391 (50%), Gaps = 8/391 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F DL LS   + A+ + G+ K T +Q +TIP +L   DV G A+TG+GKT +F++P + 
Sbjct: 85  NFTDLKLSEPTLKAIGNMGFTKMTAVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 144

Query: 62  ILEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   + + R     I + PTRELA Q+     +  ++++ T  +LIGG    A+ +KL 
Sbjct: 145 MLYSLKFKPRNGTGAIVITPTRELALQIFGVARELMESHSQTFGILIGGANRRAEAEKLM 204

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G +++I TPGR +    N    +  N++ L+IDEADR+L++GF   ++ I  ++P   +
Sbjct: 205 KGVNIIIATPGRLLDHLQNTKGFIFKNLKALIIDEADRILEIGFEDEMKQIIKILPNENR 264

Query: 180 TLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             + FSAT T +++ ++   L+           +   T++          S K  LL   
Sbjct: 265 QTMLFSATQTTKVEDLARVSLRKGPLYINVDSENETSTVDGLEQGYVVCDSDKRFLLLFS 324

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +   +V      L      V  +HG   Q+ R      F   T  +
Sbjct: 325 FLKRNQKKKIIVFLSSCNSVKYYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNATQGV 384

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R     GK+   +   ++  +
Sbjct: 385 LICTDVAARGLDIPSVDWIIQFDPPDDPRDYIHRVGRTARGSNGKGKSLMFLIPSELGFL 444

Query: 358 DAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
             + K  +  ++        ++++   LEK+
Sbjct: 445 RYL-KAAKVPLNEFEFPTNKIANVQSQLEKL 474


>gi|255942831|ref|XP_002562184.1| Pc18g03460 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586917|emb|CAP94570.1| Pc18g03460 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 790

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 123/435 (28%), Positives = 203/435 (46%), Gaps = 33/435 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  L  +++  V   GY  PT IQ   IP+ +Q  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 358 SWEESSLPKRLLELVERVGYKDPTAIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLV 417

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                    E    +   P  ++L PTRELA Q+    +K+ +     V  ++GG   E 
Sbjct: 418 YISALPRLDENEWRKNEGPYAIVLAPTRELAQQIEIEAKKFTQPLGFNVVSIVGGHSLEE 477

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 478 QAFSLRNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 537

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE---------------- 218
           P T +                +          +                           
Sbjct: 538 PVTNEKPDTEEAENSMAMSQHQYRQTMMYTATMPAAVERIARKYLRRPAIITIGGVGEAV 597

Query: 219 ---HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
                 V   +   K+   L ++L S D     I+F N K+N   +   +++ GFS   +
Sbjct: 598 DTVEQRVEMISGEDKRKKRLAEILSSGDFRPPIIVFVNIKRNCDAIAREIKQMGFSSVTL 657

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++    E+Y HRIGR
Sbjct: 658 HGSKTQDQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVINFNMATSIESYTHRIGR 717

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           TGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ   +R 
Sbjct: 718 TGRAGKSGVAITFLGSEDSDVMYDLKQML------IKSPISRVPEELRKHEAAQSKPSRG 771

Query: 396 -NNPIPQKSTGFDRR 409
                 + S+GF  +
Sbjct: 772 PGGKKIEDSSGFGGK 786


>gi|40891625|gb|AAR37337.1| vasa-like protein [Crassostrea gigas]
          Length = 758

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 132/390 (33%), Positives = 213/390 (54%), Gaps = 14/390 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F + GL  K +  V  A Y KPTP+Q  +IP+V+   D+   AQTG+GKTA+F+LP+LT
Sbjct: 311 NFDEAGLYEKFLENVRKAQYEKPTPVQKYSIPIVMAGRDLMACAQTGSGKTAAFLLPVLT 370

Query: 62  ILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            + K        + V+ P+ L++ PTRELA Q+  +  K+     L   +L GG     Q
Sbjct: 371 GMMKNGISGSSFSEVQEPQALVVAPTRELAVQIFMDARKFAHGTMLRAVVLYGGTSVGYQ 430

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---- 171
            +++E+G  +L+ TPGR++D   +GK+ ++ ++ L++DEADRMLDMGF P I+ +     
Sbjct: 431 LRQVEQGTHILVGTPGRLIDIIGKGKISLSKLKYLILDEADRMLDMGFGPDIRKLVEELG 490

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +     RQTL+FSAT  +E+QK++ +FL +   + V         +         Q  + 
Sbjct: 491 TPPKTERQTLMFSATFPEEIQKMAGDFLNDYLFLTVGRVGGACTDVTQTVYEVDRQEKRS 550

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                    ++   +  ++F  QK+N   L   L + GF   +IHG+  Q  R + L +F
Sbjct: 551 RLCDIL---TETGSEKTLVFVEQKRNADFLASYLSQNGFPTTSIHGDRLQAEREEALRDF 607

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   +++A+ +AARGLDIP V HV N+D+P   + Y+HRIGRTGR G  GKA +  + 
Sbjct: 608 KLGKAPVLIATSVAARGLDIPLVKHVINYDLPQSIDEYVHRIGRTGRCGNLGKAISFYSN 667

Query: 352 E-DIKHIDAIEKLIEKKVDWLNGDLSSLNP 380
           + D      + +++   +  +   L   + 
Sbjct: 668 DTDGALAKPLVRILSDAMQEVPSWLEEYSK 697


>gi|255089378|ref|XP_002506611.1| predicted protein [Micromonas sp. RCC299]
 gi|226521883|gb|ACO67869.1| predicted protein [Micromonas sp. RCC299]
          Length = 639

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 202/383 (52%), Gaps = 13/383 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD+     +   +    +  PTP+Q   IP+ L+R D+   AQTG+GKTA+F  P++  
Sbjct: 187 FADIDFGAAINRNIQRCKFKNPTPVQKYAIPISLKRRDLMACAQTGSGKTAAFCFPIIHG 246

Query: 63  LE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +           R   P  L+L PTRELA Q+ +   K+     +   ++ GG P   Q 
Sbjct: 247 IIDRGLQAPRGGRKTFPIALVLSPTRELAIQIHEESRKFAYQTGVASVVVYGGAPAAQQF 306

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +++ERG D+LI TPGR++D  +R K+ +  I+ L +DEADRMLDMGF P I+ I      
Sbjct: 307 REMERGCDMLIATPGRLIDLVDRAKISLERIQYLALDEADRMLDMGFEPQIRQIVEQRGM 366

Query: 177 TRQ----TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                  T+LFSAT   E+Q+++ +FLQ+   + V    S+   I        +   K  
Sbjct: 367 PPPGDRQTMLFSATFPKEIQRMASDFLQDYIFLTVGRVGSSHTLITQTIEYVQSYNDKCQ 426

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L+  +   Q      ++F   K+    L   L +QGF   +IHG+  Q+ R   L +F+
Sbjct: 427 MLMDLVHAVQG---LTLVFVETKRGADQLEDWLSQQGFPSTSIHGDRTQQEREWALKSFR 483

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+D+AARGLDIP V HV NFD+P+  ++Y+HRIGRTGRAG+ G A      +
Sbjct: 484 SGKTPILVATDVAARGLDIPHVTHVINFDLPSDVDDYVHRIGRTGRAGKKGLATAFFTDK 543

Query: 353 DIKHIDAIEKLIEKKVDWLNGDL 375
           D      + +++ +    +   L
Sbjct: 544 DSSLARGLVEILSEANQDVPSFL 566


>gi|158300606|ref|XP_320481.4| AGAP012045-PA [Anopheles gambiae str. PEST]
 gi|157013241|gb|EAA00456.4| AGAP012045-PA [Anopheles gambiae str. PEST]
          Length = 910

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 133/386 (34%), Positives = 210/386 (54%), Gaps = 6/386 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
           +F +      V+  +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP  +
Sbjct: 226 NFEEGNFPEYVMTEIKKQGFPRPTAIQSQGWPIALSGRDMVGIAQTGSGKTLAYMLPGLV 285

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNK 117
               +K  +R   P  L+L PTRELA Q+      +G +   N+    + GG     Q +
Sbjct: 286 HISHQKPLSRGEGPIVLVLAPTRELAQQIQTVVRDFGNHSKPNIRYTCVFGGALKGPQVR 345

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LERG +V+I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   
Sbjct: 346 DLERGVEVVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPD 405

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALL 235
           RQ L++SAT   E+Q ++E+FL++  +I + + S  +     +   V    +   K   L
Sbjct: 406 RQVLMWSATWPKEVQTLAEDFLRDYIQINIGSLSLAANHNIHQIVDVCEENEKEGKLLKL 465

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            + + + D     IIF   KK V +L  ++ + G+   +IHG+  Q  R  +L +F+ G 
Sbjct: 466 LKEIATSDATNKIIIFVETKKKVDDLLKNIVRDGYGATSIHGDKSQTERDYVLQDFRHGK 525

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+D+AARGLD+ DV +V NFD PN +E+YIHRIGRTGR  ++G A+T     + +
Sbjct: 526 STILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCSQYGTAYTFFTPNNGR 585

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPP 381
               +  ++E+       +L  +   
Sbjct: 586 QARELLSVLEEAGQQPTVELVEMAKQ 611


>gi|156093649|ref|XP_001612863.1| DEAD/DEAH box helicase [Plasmodium vivax SaI-1]
 gi|148801737|gb|EDL43136.1| DEAD/DEAH box helicase, putative [Plasmodium vivax]
          Length = 539

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 115/371 (30%), Positives = 198/371 (53%), Gaps = 8/371 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L +  +++ ++ + G+ KPT IQ K +P   Q+ D+ G+++TG+GKTA F++P+L 
Sbjct: 133 SFRELNICEEILQSIEELGWKKPTAIQRKMLPFAFQKRDIIGLSETGSGKTACFIIPILQ 192

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN-KKLE 120
            L +   + +    L++ PTREL  Q+A +F+  G N  + +  + GG+    Q+    +
Sbjct: 193 ELRE---KRQSFFALVISPTRELCIQIAQHFQALGSNLLINICTIFGGVDIVTQSLNLAK 249

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      +    N     + N++ LV DEAD++L + F   I  +  ++P  R T
Sbjct: 250 KPNIIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSLDFEASINKLLLILPEKRIT 309

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT  + K+ +  L+NP  +EV++  STA T+   ++       K        L 
Sbjct: 310 FLFSATMTKSVAKLKKASLKNPITVEVSSKYSTASTLIENYIFIPL---KYKYTYLCSLC 366

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              + ++ IIF N       +       G     +HG + Q  R+  L++FK     +++
Sbjct: 367 FHFSSRSIIIFANTCATAQKINFFCRNLGLKSICLHGKLTQNQRLSSLNSFKSKRYNILI 426

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++ + ARGLD+ D+  V NFD+    + YIHR+GRT RAGR GK+ T V + D++   AI
Sbjct: 427 STQVGARGLDLKDIRIVINFDLC-SCKEYIHRVGRTARAGRTGKSITFVTQYDVESFLAI 485

Query: 361 EKLIEKKVDWL 371
           EK++ KK+D  
Sbjct: 486 EKMLNKKIDKF 496


>gi|47940414|gb|AAH71505.1| Ddx39a protein [Danio rerio]
          Length = 427

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 93/375 (24%), Positives = 161/375 (42%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY  +           I  +    K    
Sbjct: 106 IEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMSSVKCAAFFGGMSIKKDEDVLKKNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L N    ++ +    +  +     +Q+I  L P  +Q ++
Sbjct: 166 HIVVGTPGRILALSRNKTLTLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF       V L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVPRCVALSQLLVEQNFPAIAIHRGMTQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A   V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVIFVSDETDAKILNDVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRFEVNVAELPEEID 418


>gi|262196937|ref|YP_003268146.1| DEAD/DEAH box helicase [Haliangium ochraceum DSM 14365]
 gi|262080284|gb|ACY16253.1| DEAD/DEAH box helicase domain protein [Haliangium ochraceum DSM
           14365]
          Length = 908

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 120/371 (32%), Positives = 202/371 (54%), Gaps = 8/371 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGL P+++ A+ + GY +P P+Q      ++   DV   ++TG+GKTA F +P++ 
Sbjct: 63  SFAELGLQPELLQALEEMGYDRPMPVQAAVFQPLMNGRDVMVQSRTGSGKTAGFGIPVVQ 122

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++      +    LIL PTRELA QV+    +  K   L +  + GG P + Q   L  
Sbjct: 123 HIDAASKGAQ---ALILAPTRELALQVSREIAQLAKPKGLHIEPIYGGAPIKPQMDALAA 179

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V+  TPGR+LDH  R  L   NI +L++DE D ML MGF   I+ I   +P      
Sbjct: 180 GAQVVSGTPGRVLDHLRRKTLDPKNIRMLILDECDEMLSMGFQEEIERIIEHLPAKENRQ 239

Query: 182 L--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
              FSAT+ DE+Q+++   + +P+ I ++T + + + I+H +                 +
Sbjct: 240 TVLFSATIPDEIQRIARRHMTDPEEISLSTGNISVDDIDHSYYVVSGV---ARTRDLLKV 296

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              ++  + IIFCN +++   +   L+ QG+   AI  ++ QR R +++   ++  +  +
Sbjct: 297 LRAESPDSAIIFCNTREDTNTVAKFLQGQGYDAEAISSDLTQRDRERVMKRMRDRNLDFL 356

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI D+ HV N+  P+  E Y+HR GRTGRAG+ G A +LV   ++     
Sbjct: 357 VATDVAARGIDISDLSHVINYTFPDSPEVYVHRTGRTGRAGKSGVAISLVGPRELGSFYY 416

Query: 360 IEKLIEKKVDW 370
           ++ + + + + 
Sbjct: 417 LKLIYKIRPEE 427


>gi|312218576|emb|CBX98521.1| hypothetical protein [Leptosphaeria maculans]
          Length = 679

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 133/394 (33%), Positives = 205/394 (52%), Gaps = 21/394 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  +GY  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L  
Sbjct: 195 FTNPPLDDHLLSNIELSGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQ 254

Query: 63  LE--------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
                            GR R   P +L+L PTREL +Q+ +   K+     +   ++ G
Sbjct: 255 NFVNGPSPPPQSQAGGYGRQRKAYPTSLVLAPTRELVSQIFEEARKFAYRSWVRPCVVYG 314

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P I+
Sbjct: 315 GADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLANIKYLVLDEADRMLDMGFEPQIR 374

Query: 169 NITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
            I            QTL+FSAT   ++Q ++ +FL+    + V    ST+E I       
Sbjct: 375 RIVEGEDMPPTAARQTLMFSATFPRDIQMLARDFLKEYIFLSVGRVGSTSENITQKVEYV 434

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                +        +         +IF   K+   +L   L  QGF   +IHG+  QR R
Sbjct: 435 EDADKRSV---LLDILHTHGAGLTLIFVETKRMADSLSDFLINQGFPATSIHGDRTQRER 491

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            K L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G 
Sbjct: 492 EKALEMFRNGRCPILVATAVAARGLDIPNVKHVVNYDLPTDIDDYVHRIGRTGRAGNTGI 551

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           A     + +   +  +  L+++    +   L S+
Sbjct: 552 ATAFFNRGNRGVVRDLLDLLKEANQEVPSFLESI 585


>gi|308813391|ref|XP_003084002.1| putative RNA helicase, DRH1 (ISS) [Ostreococcus tauri]
 gi|116055884|emb|CAL57969.1| putative RNA helicase, DRH1 (ISS) [Ostreococcus tauri]
          Length = 1118

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 148/494 (29%), Positives = 228/494 (46%), Gaps = 53/494 (10%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F D      +  A+   GY  PTPIQ +  P++L+  DV  IA+TG+GKT  F+LP  
Sbjct: 86  VTFDDAKFPAALRKALKAQGYDAPTPIQAEAWPILLKGKDVVAIAKTGSGKTCGFLLPAL 145

Query: 59  -------------MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105
                        M  +  + R     P  ++L PTRELA Q+ D   K+        A+
Sbjct: 146 AKIVAEGTQKAPEMQLVDGRWRPGAVTPSVIVLAPTRELAIQIHDECAKFCPAAGCRSAV 205

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIE-----ILVIDEADRMLD 160
           L GG     Q + L  GADV++ TPGR+ D           +       +V+DEADRMLD
Sbjct: 206 LYGGAAKGDQLRALRSGADVVVATPGRLNDFLEPPPGFTAPVSAVKAAYVVLDEADRMLD 265

Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIE 218
           MGF P I+ I  L P  RQT++F+AT    +QK+++ F   P  I++ +     TA    
Sbjct: 266 MGFEPQIKKIFKLCPSARQTVMFTATWPKGVQKIADAFTTKPIHIQIGSGGDKLTANKSI 325

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVN-LCHSLEKQGFSVCAIHG 277
              V    +  K    +  L +     +  I+F   K+          +    S  +IHG
Sbjct: 326 TQTVEVVEEEEKFDRCVAILKKELGKNETCIMFAGTKRRCDFLDRRLKQVGFSSAGSIHG 385

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           + DQ  R  +L NF+ G   ++VA+D+AARGLDIP V  V  +D P + E+Y+HRIGRTG
Sbjct: 386 DKDQYEREMVLDNFRRGRGNILVATDVAARGLDIPGVAAVIVYDFPLQVEDYVHRIGRTG 445

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKL--------------IEKKV-DWLNGDLSSLNPPL 382
           RAG+ GKAFT   K++    + + ++              +++KV  ++  D S+L  PL
Sbjct: 446 RAGKDGKAFTFFTKDNRGAANELIEILQGAGQTVPLALQAMQRKVFQFITFDSSTLLRPL 505

Query: 383 ----------EKIDIAQHNHARKNNPIPQKSTGFDR-----RKKNYSSQKSHIPLKESEK 427
                      ++D++    A   + +   +    R     R +   S  +H    +  +
Sbjct: 506 SRRRHFDPIRRRVDVSGPPRAASAHVVALHARDARRVSPRPRTRAIGSSNAHRTRAKRHR 565

Query: 428 ISKLQQDIQENDAD 441
               +    E+ AD
Sbjct: 566 GRTPRSVSDESVAD 579


>gi|254457791|ref|ZP_05071219.1| dead/deah box helicase domain protein [Campylobacterales bacterium
           GD 1]
 gi|207086583|gb|EDZ63867.1| dead/deah box helicase domain protein [Campylobacterales bacterium
           GD 1]
          Length = 453

 Score =  143 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 140/380 (36%), Positives = 212/380 (55%), Gaps = 10/380 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L LS +++  + + GY + TPIQ + +P +L   DV   A+TG+GKTA+F + +L
Sbjct: 1   MKFSNLPLSKEMLHNLEEIGYKEMTPIQAEALPHILDGKDVIAQAKTGSGKTAAFGIGLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
           T L+  + RV+   +LIL PTRELA QVA       +  +    L +  G  F  Q   L
Sbjct: 61  TKLQVKKFRVQ---SLILCPTRELADQVAKELRMLARATHNVKILTLCGGAAFGPQLGSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA +++ TPGRIL H  +  L + ++E+LV+DEADRMLDMGF   I  + S     +Q
Sbjct: 118 SHGAHIIVGTPGRILKHLKKATLSLEDLEMLVLDEADRMLDMGFSEEINEVLSFTKKRKQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT TDE+  +S+N         V+  +++ ET  +     Y     +       +
Sbjct: 178 TLLFSATYTDEIMDISKNLQH----EAVSVKTTSTETANNITERFYEVNDHQKLDTIVNI 233

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S    +N IIF N K     L  +L K+     AIHG+++Q  R  +L  F   +  ++
Sbjct: 234 LSNFKPENVIIFTNTKIEAKELAENLLKKKIDALAIHGDLEQYERNDVLVQFANRSCPVL 293

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI ++  V N+D+P+  E Y HRIGRTGRAG+ G AFTL ++ +      
Sbjct: 294 IATDVAARGLDIKEMSMVINYDLPHGDETYTHRIGRTGRAGQDGLAFTLFSQYEADKAYE 353

Query: 360 IEKLIEKKVDWLNGDLSSLN 379
            +   E ++    G+L ++N
Sbjct: 354 YKN--ETRLFEDAGELKTVN 371


>gi|218187595|gb|EEC70022.1| hypothetical protein OsI_00586 [Oryza sativa Indica Group]
          Length = 754

 Score =  143 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 127/353 (35%), Positives = 196/353 (55%), Gaps = 2/353 (0%)

Query: 14  CAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK-GRARVRM 72
             V  AG+  PTPIQ ++ P+ L+  D+  +A+TG+GKT  +++P   +L++        
Sbjct: 240 EWVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNSRDG 299

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132
           P  L+L PTRELA Q+ D  +K+G++  ++   L GG P   Q + LERGAD+++ TPGR
Sbjct: 300 PTVLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLERGADIVVATPGR 359

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           + D     ++ ++ +  LV+DEADRMLDMGF P I+ I   V   RQTL+F+AT   E++
Sbjct: 360 LNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKEVR 419

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           K++ + L NP ++ +                      +K   L Q +       + II  
Sbjct: 420 KIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQ-ILRSQEPGSKIIIF 478

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
              K + +       + +   AIHG+  Q  R  +LS F+ G   ++VA+D+AARGLDI 
Sbjct: 479 CSTKRMCDQLARNLARQYGASAIHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLDIK 538

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           D+  V N+D P   E+Y+HRIGRTGRAG  G A+T    +D K+   + K++E
Sbjct: 539 DIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLVKILE 591


>gi|189533973|ref|XP_001922220.1| PREDICTED: probable ATP-dependent RNA helicase DDX10 [Danio rerio]
          Length = 864

 Score =  143 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 130/468 (27%), Positives = 215/468 (45%), Gaps = 17/468 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+D  LS K +  +L+A Y +PT IQ +TI   LQ  DV G A+TG+GKT +F++P+L
Sbjct: 70  VKFSDFPLSKKTLKGLLEAQYRQPTEIQRQTIGFALQGRDVLGAAKTGSGKTLAFLIPVL 129

Query: 61  TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L + +         LI+ PTRELA Q  +   K GKN+  +  L+IGG   + +++K+
Sbjct: 130 ECLYREQWTAMDGLGALIISPTRELAYQTFEVLRKVGKNHEFSAGLVIGGKDLKDESEKI 189

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R   ++      +           +++ +LV+DEADR+LDMGF   +  I   +P +RQ
Sbjct: 190 HRTNIIICTPGRLLQHMDETATFHASDLHMLVLDEADRILDMGFADTLNAIVENLPKSRQ 249

Query: 180 TLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           TLLFSAT T  ++     +               +              + K   L   L
Sbjct: 250 TLLFSATQTRSVKDLARLSLKDPEYVWVHEQAKFSTPATLEQNYVVCELHQKVNMLYSFL 309

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                        C ++   +       + G SV A+HG   Q  R+++ ++F   T  +
Sbjct: 310 RSHLQKKIIVFFACCKEVQYLFRIFCRLRPGISVLALHGKQQQMKRVEVYNDFVRKTSAV 369

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+AARGLD P V  V  FD P  A  YIHR+GRT R    G+A  ++   + K + 
Sbjct: 370 LFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEKGM- 428

Query: 359 AIEKLIEKK--VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            I +L EKK  ++ +  +   L    +K++            + Q+    +R ++ + S 
Sbjct: 429 -ISQLQEKKVPINKIQVNPEKLMSVQQKLEAF----------LAQEKEQKERAQRCFVSY 477

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFR-GNMPAFMLPKNRGKLND 463
              + L +++ +  + Q      A SLG        F+L   + +   
Sbjct: 478 LRSVYLMKNKDVFDVLQLKLPEYAMSLGLAVAPRVRFLLKAQQQRRTA 525


>gi|6323947|ref|NP_014017.1| Has1p [Saccharomyces cerevisiae S288c]
 gi|2500537|sp|Q03532|HAS1_YEAST RecName: Full=ATP-dependent RNA helicase HAS1; AltName:
           Full=Helicase associated with SET1 protein 1
 gi|530347|emb|CAA56799.1| RNA helicase [Saccharomyces cerevisiae]
 gi|151945998|gb|EDN64230.1| helicase associated with set1 [Saccharomyces cerevisiae YJM789]
 gi|190408516|gb|EDV11781.1| RNA-dependent helicase [Saccharomyces cerevisiae RM11-1a]
 gi|207342060|gb|EDZ69940.1| YMR290Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256270688|gb|EEU05851.1| Has1p [Saccharomyces cerevisiae JAY291]
 gi|259148878|emb|CAY82123.1| Has1p [Saccharomyces cerevisiae EC1118]
 gi|285814296|tpg|DAA10191.1| TPA: Has1p [Saccharomyces cerevisiae S288c]
 gi|323346981|gb|EGA81258.1| Has1p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323353213|gb|EGA85513.1| Has1p [Saccharomyces cerevisiae VL3]
          Length = 505

 Score =  143 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 102/390 (26%), Positives = 188/390 (48%), Gaps = 6/390 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS   + A+   G+   T +Q +TIP +L   DV G A+TG+GKT +F++P + 
Sbjct: 43  KFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 102

Query: 62  ILEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-L 119
           +L   + + R    +I + PTRELA Q+     +  + ++ T  ++IGG     + +K +
Sbjct: 103 LLHSLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLM 162

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    ++      +    N    +  N++ L+IDEADR+L++GF   ++ I  ++P   +
Sbjct: 163 KGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNEDR 222

Query: 180 TLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             + FSAT T +++ ++   L+         P +   T +          S K  LL   
Sbjct: 223 QSMLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFLLLFS 282

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +   +V      L      V  +HG   Q+ R      F      +
Sbjct: 283 FLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGI 342

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R  +  GK+   +   ++  +
Sbjct: 343 LICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNELGFL 402

Query: 358 DAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
             ++  K+   + ++    ++++   LEK+
Sbjct: 403 RYLKASKVPLNEYEFPENKIANVQSQLEKL 432


>gi|320583085|gb|EFW97301.1| ATP-dependent RNA helicase DED1 [Pichia angusta DL-1]
          Length = 2471

 Score =  143 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 138/426 (32%), Positives = 210/426 (49%), Gaps = 26/426 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    L P +V  +  A + KPTP+Q  +IP+V    D+   AQTG+GKT  F+ P+L+
Sbjct: 136 EFTSPPLDPLLVENIKQARFTKPTPVQKYSIPIVANGRDLMACAQTGSGKTGGFLFPVLS 195

Query: 62  ILEKG------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
              K               R   P  L+L PTREL +Q+ +   K+     +   ++ GG
Sbjct: 196 ESFKHGPTESSQTDNAFDRRKAHPTALVLAPTRELVSQIYEEARKFSYRSWVRPVVVYGG 255

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q  +L++G D+L+ TPGR+ D   RGK+ + NI+ LV+DEADRMLDMGF   I++
Sbjct: 256 AEVYLQMDQLKQGCDLLVATPGRLNDLLERGKISLKNIKYLVLDEADRMLDMGFEIQIRH 315

Query: 170 ITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I               +FSAT   E+Q ++++FL N   + V    ST+E I    +   
Sbjct: 316 IIQGCDMPPPGERQTLMFSATFPKEIQLMAKDFLHNYIFLSVGRVGSTSENITQRILYVE 375

Query: 226 AQYSKK-CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
               K     +    +        +IF   KK    L   L  Q F   +IHG+  Q  R
Sbjct: 376 DDEKKSSLLDILTSTEDTLANGLTLIFVETKKMADILSDFLINQDFPATSIHGDRSQYER 435

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + L +F+ G   ++VA+ +AARGLDIP+V HV N+D+PN  ++Y+HRIGRTGRAG  G 
Sbjct: 436 ERALESFRTGRTPILVATAVAARGLDIPNVTHVVNYDLPNDIDDYVHRIGRTGRAGNTGV 495

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           A   V + +   +  + +++ +    +   L+          IA+ N   +      K+ 
Sbjct: 496 ATAFVNRGNKNVVKDLIEILSEANQEVPDFLTV---------IARENSVGRGRGRGGKTQ 546

Query: 405 GFDRRK 410
             D RK
Sbjct: 547 NRDYRK 552


>gi|226478852|emb|CAX72921.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Schistosoma japonicum]
          Length = 527

 Score =  143 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 121/388 (31%), Positives = 197/388 (50%), Gaps = 5/388 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL +S  V  A+   G+   T IQ K IP +L+  D+   A+TG+GKT +F++P++ 
Sbjct: 51  KFEDLPISEPVKRAIKVMGFTHMTDIQNKCIPQLLEHRDIMACAKTGSGKTLAFLIPVVE 110

Query: 62  -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L  G         +I+ PTREL+ Q      +  +  NL + L++GG   + + + LE
Sbjct: 111 LMLSLGLQPRNGTGAIIISPTRELSLQTYGVLTELIQFTNLRIGLIMGGSNRQTEAQNLE 170

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G  +L+ TPGR +    N    L +N++ LVIDEADR+LD+GF   ++ I  L+P  RQ
Sbjct: 171 KGVTILVATPGRLLDHLTNTKFFLRHNLKALVIDEADRLLDIGFEVEMRQIIKLLPTVRQ 230

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT+ ++ + ++   L+    +  + P + A              SK    L    
Sbjct: 231 TMLFSATLNEKTKNLANAALKASCVMVGSVPDNEATVEGLEQGYVVCSPSK-RFCLLYTF 289

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  ++F      V      L      V AIHG   Q  R      F +    ++
Sbjct: 290 IRKNKSKKIMVFMASCMEVKFYYELLNFVDTPVLAIHGRQKQAKRTSTFLQFIKAEAAVL 349

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+ ARGLDIP V  +  +D P+ A+ YIHR+GRT RAG  G A  ++   +++ +  
Sbjct: 350 LCTDVGARGLDIPKVDWILQYDPPDDAKEYIHRVGRTARAGSTGNALLVLRPHELEFLSI 409

Query: 360 IEKLIEKKVDW--LNGDLSSLNPPLEKI 385
           + K   K V++   N  ++ + P LEK+
Sbjct: 410 LRKARVKVVEYEIANSKMADVQPALEKL 437


>gi|225680133|gb|EEH18417.1| ATP-dependent RNA helicase dbp4 [Paracoccidioides brasiliensis
           Pb03]
          Length = 816

 Score =  143 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 120/458 (26%), Positives = 203/458 (44%), Gaps = 18/458 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL LS   +  +  + +   T IQ K +P  L+  D+ G A+TG+GKT +F++P+L +
Sbjct: 51  FADLPLSEASLDGLSASHFKTLTSIQAKALPHALKGRDILGAAKTGSGKTLAFLVPLLEL 110

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         L+L PTRELA Q+ +   K G++++ +  L+IGG   + + ++L R
Sbjct: 111 LYRKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHSFSAGLVIGGKSLQEEQERLGR 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +           N I++LV+DEADR++DMGF   +  I   +P  RQT+
Sbjct: 171 MNILVCTPGRMLQHMDQTAAFDTNRIQLLVLDEADRIMDMGFQNTVDAIVEHLPKERQTM 230

Query: 182 LFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT T ++      +             SS                 K   L   +  
Sbjct: 231 LFSATQTQKVSDLARLSLRDPEYISVHEAASSATPAKLQQNYIVTPLPEKLDTLWSFIRS 290

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S  +         ++   V       + G S+  +HG   Q +R+ I   F       + 
Sbjct: 291 SLKSKIMVFFSSGKQVRFVYESFRHMQPGISLLHLHGRQKQGARVDITKKFSVAKHACLF 350

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD P V  V   D P  A+ YIHR GRT R  R+G+A   +   +   +  +
Sbjct: 351 ATDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFLEPSEEAAM--L 408

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           ++L +KK+            P+EKI++         + +  ++  F      Y  QK+ I
Sbjct: 409 KRLEQKKI------------PIEKINVRTKKQQSIKHQL--QNMCFKDPALKYLGQKAFI 454

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
              +S  + K ++     D     +  ++     P+ +
Sbjct: 455 SYVKSIHVQKDKEVFVVKDLPLEAYAASLGLPGAPRIK 492


>gi|154344931|ref|XP_001568407.1| ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134065744|emb|CAM43518.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 860

 Score =  143 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 122/393 (31%), Positives = 188/393 (47%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFADL + P +   +   GY KPTP+Q   IP+ L   D+   AQTG+GKTA+F++P++ 
Sbjct: 406 DFADLLVEPALAANIERCGYKKPTPVQRYGIPVALAGSDLMACAQTGSGKTAAFLIPVVQ 465

Query: 62  ILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +        R R   P  L+L PTRELA Q+ D   K   N ++   ++     +    
Sbjct: 466 YMLVHGVSPARQRKSYPIALVLAPTRELAVQIFDEVRKLTFNTDIFYDVV-----YGGTR 520

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI------QNI 170
                  D+L+  PGR+ D FN   L  + I+ L++DEADRML+MGF   I      +  
Sbjct: 521 YPQRFEQDILVACPGRLRDMFNEEYLSFSAIKFLILDEADRMLEMGFEEQIEELVASRYT 580

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQT +FSAT    +  +++ +L+    +       +        +       K
Sbjct: 581 DMPTVDDRQTFMFSATFPQRILNLAKRYLRRKYYLLTVGRVGSTTKNITQTIEHVPDNEK 640

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
               L Q++   +     +IF   KK   ++   L ++G S   IHG+  Q+ R   L +
Sbjct: 641 MD-RLLQIIYGHEMSDMVLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALED 699

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK+    ++VA+D+A+RGLDIPDV HV  FD+P   ++Y HRIGRTGRAG  G A     
Sbjct: 700 FKQKVTPILVATDVASRGLDIPDVAHVVQFDLPQEMDDYTHRIGRTGRAGNKGIATAFYN 759

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
           + + +    + K   +    +          +E
Sbjct: 760 RNNRRLALDLHKYFSEHGQEIPKWFQQEAELVE 792


>gi|15231074|ref|NP_191416.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|75335836|sp|Q9M2F9|RH52_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 52
 gi|6735374|emb|CAB68195.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|15146288|gb|AAK83627.1| AT3g58570/F14P22_160 [Arabidopsis thaliana]
 gi|21593710|gb|AAM65677.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|27363456|gb|AAO11647.1| At3g58570/F14P22_160 [Arabidopsis thaliana]
 gi|332646279|gb|AEE79800.1| DEAD-box ATP-dependent RNA helicase 52 [Arabidopsis thaliana]
          Length = 646

 Score =  143 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 135/390 (34%), Positives = 205/390 (52%), Gaps = 15/390 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA++ L   +   +    YVKPTP+Q   IP++    D+   AQTG+GKTA+F  P+++
Sbjct: 147 TFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIIS 206

Query: 62  ILEKGRA-------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            + K +        R   P  +IL PTRELA Q+ D   K+     + V +  GG P   
Sbjct: 207 GIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQ 266

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++LERG D+L+ TPGR+ D   RG++ +  +  L +DEADRMLDMGF P I+ I   +
Sbjct: 267 QIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQM 326

Query: 175 PFTRQ----TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                    T+LFSAT   E+Q+++ +FL N   + V    S+ + I       +    +
Sbjct: 327 DMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKR 386

Query: 231 KCALLQQLLQSQDTMKN----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              +     Q ++  +      ++F   KK   +L + L   GF    IHG+  Q+ R  
Sbjct: 387 SHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREV 446

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG  G A 
Sbjct: 447 ALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLAT 506

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
                 +      + +L+++    +   L+
Sbjct: 507 AFFNDNNTTMAKPLAELMQEANQEVPDWLT 536


>gi|320583326|gb|EFW97541.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Pichia angusta
           DL-1]
          Length = 533

 Score =  143 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 132/408 (32%), Positives = 210/408 (51%), Gaps = 22/408 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  +SP ++  +   GY +PTPIQ   +P  L   D+ GIA+TG+GKT +F++P + 
Sbjct: 129 KWEESQISPLILQQLEALGYTEPTPIQRAAVPNGLTGRDLVGIAETGSGKTLAFLIPSVN 188

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            + +     R   P  LIL PTRELA Q+   F K+       ++L IGG  ++   +KL
Sbjct: 189 YILQLPRLGRFEGPYVLILVPTRELALQIEREFSKFASLGFDVISL-IGGHSYDEHAEKL 247

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----------- 168
           ERG +V+I TPGR++D   +  + ++    LV+DEADRM+DMGF   +            
Sbjct: 248 ERGVEVIIATPGRLVDCLEQQLVSLDRCFFLVMDEADRMIDMGFENDLNKILESLPDGSE 307

Query: 169 --NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
             +        R T++F+ATM  +++K+S  +L+NP  + V       +++    +    
Sbjct: 308 NPHYLGSGEPKRTTMMFTATMPPQIEKISAKYLKNPGTVMVGEVGGAVDSVRQEAIQVDD 367

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              K+  +LQ++L         IIF N +K    +   LE+ GF+   +HG+  Q  R  
Sbjct: 368 SDEKRLQMLQKVLTRGIYSPPIIIFVNFRKTCEMVAEFLEQLGFNAVTMHGSKTQEQREY 427

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            +   KEG   ++VA+D+A RG+DIPDV  V NF +    E+Y HRIGRTGRAG+ G A 
Sbjct: 428 AIQQIKEGRSDILVATDVAGRGIDIPDVSLVVNFQMAKNIEDYTHRIGRTGRAGKEGTAI 487

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           T  +  D   +  ++++I K        +S     L +   AQ    +
Sbjct: 488 TFWSAADADVLYNLKQMITK------SPVSRCPEELRRHPAAQKKMVK 529


>gi|39945858|ref|XP_362466.1| hypothetical protein MGG_08049 [Magnaporthe oryzae 70-15]
 gi|152013483|sp|A4RGU2|DBP4_MAGO7 RecName: Full=ATP-dependent RNA helicase DBP4
 gi|145019285|gb|EDK03513.1| hypothetical protein MGG_08049 [Magnaporthe oryzae 70-15]
          Length = 798

 Score =  143 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 113/450 (25%), Positives = 199/450 (44%), Gaps = 9/450 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           FA+L LS      V D+ +   T IQ + IPL L+  D+ G A+TG+GKT +F++P +  
Sbjct: 51  FAELPLSEPTAKGVRDSHFETLTDIQARAIPLALKGRDILGAAKTGSGKTLAFLVPLLEK 110

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  +   +      L+L PTRELA Q      K G+++  +  L+IGG     + + L R
Sbjct: 111 LYREQWTQEAKLGALVLSPTRELAVQTFQVLRKIGRHHLFSAGLVIGGKSVREEAEALSR 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +          ++N+++LV+DEADR++D+GF   +  +   +P TRQTL
Sbjct: 171 MNILIGTPGRILQHLDQTHGFDVDNLQLLVLDEADRIMDLGFQRDVDALVQHLPTTRQTL 230

Query: 182 LFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LFSAT + ++      +             ++   +             K   L   +  
Sbjct: 231 LFSATQSKKVSDLARLSLKDPEYVSVHAEATTATPSTLQQHYIVTPLPEKLDTLWGFIKA 290

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +  +     +   ++   V       + G  +  +HG   Q +R+ +   F       + 
Sbjct: 291 NLKSKMVVFLSSGKQVRFVYESFRQMQPGIPLLHMHGRQKQLARLDVTKRFDSSKHACLF 350

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKHIDA 359
           A+D+ ARG+D   V  V   D P   ++YIHR+GRT R  R GKA   +   E+   +  
Sbjct: 351 ATDVIARGIDFTGVDWVVQVDAPEDTDDYIHRVGRTARYEREGKAVIFLDPSEEAGMLKR 410

Query: 360 IE--KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           +E  K+   KV   +    S+   L+ I    H+       + QK+     R  + ++++
Sbjct: 411 LERKKVPITKVTAKDSKKKSIRDELQSICWKSHDVKY----LAQKAFISYARAVHRATER 466

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRG 447
                + S+++ K  +   E  A S+G  G
Sbjct: 467 DEKHNENSDQVFKFDKLDLEGFAKSMGLAG 496


>gi|332025244|gb|EGI65418.1| Putative ATP-dependent RNA helicase DDX10 [Acromyrmex echinatior]
          Length = 795

 Score =  143 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 122/448 (27%), Positives = 218/448 (48%), Gaps = 15/448 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           + F+DL LS   + ++ +  YV+ T IQ ++I L LQ +D+ G A+TG+GKT +F++P+ 
Sbjct: 40  IKFSDLPLSRVTLKSLTENNYVEMTDIQKQSIGLALQGNDILGAAKTGSGKTLAFLIPIL 99

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +  K   R+    +LI+ PTRELA Q+ +   K G+ ++++  L+IGG   + + K++
Sbjct: 100 EILYCKQWTRLDGLGSLIITPTRELAYQIYETLRKVGQYHSISAGLIIGGKDLKFEKKRM 159

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   ++      +            N++ILV+DEADR LDMGF   + +I   +P  RQ
Sbjct: 160 DQCNVIICTPGRLLQHMDENPLFNCVNMQILVLDEADRCLDMGFEKTMNSIIENLPPKRQ 219

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT T  ++ ++   L++P  + V+  S+                  K   +    
Sbjct: 220 TLLFSATQTKSVKDLARLSLKDPLYVSVHEHSAHTTPEGLQQSYIICSLEDKL-AMLWSF 278

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC--AIHGNIDQRSRMKILSNFKEGTIQ 297
                 +  I+F +  K V  +  +  +    +   A++G + Q  RM I  +F +    
Sbjct: 279 IRNHVKQKIIVFFSSCKQVKYIYEAFCRLRPGISLLALYGTLHQLRRMNIYESFCKKQHA 338

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ A+D+AARGLD P V  V   D P     YIHR GRT R    G++  ++   +    
Sbjct: 339 VLFATDIAARGLDFPTVNWVVQMDCPEDVNAYIHRAGRTARFKSGGESLLVLLPSEEMI- 397

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             IE+L ++K+     ++  +NP     +  Q  H +    + +  T  +  ++ + S  
Sbjct: 398 --IERLKQRKI---PINMIKINP-----NKLQSPHRKLEALLARDVTLKETAQRAFVSYI 447

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGF 445
             + L + ++I  +     +  A SLG 
Sbjct: 448 KSVFLMKDKEIFNVHALNTDEFAKSLGL 475


>gi|260777558|ref|ZP_05886451.1| ATP-dependent RNA helicase DbpA [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605571|gb|EEX31856.1| ATP-dependent RNA helicase DbpA [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 458

 Score =  143 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 134/368 (36%), Positives = 214/368 (58%), Gaps = 7/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L  +++  +    Y + TPIQ + +P+VL+  DV G  +TG+GKTA+F L +L+
Sbjct: 4   SFKSLNLRSELIETLNSLNYTEMTPIQQQALPIVLEGKDVIGQGKTGSGKTAAFTLGLLS 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+   TL+L PTRELA QVA       +  +    L +  G+P   Q   LE
Sbjct: 64  NLSVKRFRVQ---TLVLCPTRELADQVAKEVRTLARGIHNIKVLTLCGGMPMGPQIGSLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH ++G++ +  +  LV+DEADRML+MGF   I  I    P  RQT
Sbjct: 121 HGAHILVGTPGRILDHLSKGRINLAEMNTLVLDEADRMLEMGFEEAIDAIIDEAPQDRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    ++ ++   +++P+ I+V +   T +T            +++     + L 
Sbjct: 181 LLFSATFPKNIESLASKVMRDPQMIKVES---THQTTTIEQRFYKLNATEERDDALEALL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++FCN KK V  +   L  +GFSV  IHG+++QR R + L+ F   ++ ++V
Sbjct: 238 LTHKPESSVVFCNTKKEVQKVTDELSHRGFSVVEIHGDMEQREREQALTMFANKSVSILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+  ++++   +  I
Sbjct: 298 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAFSFYSEKEEYRVARI 357

Query: 361 EKLIEKKV 368
           ++ ++  +
Sbjct: 358 DEYMDIAI 365


>gi|145355346|ref|XP_001421924.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582163|gb|ABP00218.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 421

 Score =  143 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 133/391 (34%), Positives = 196/391 (50%), Gaps = 13/391 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            F +      +  A+   GY  PTPIQ +  P++L+  DV  IA+TG+GKT  F+LP   
Sbjct: 4   TFDEAAFPKPLRAALKAQGYDAPTPIQAEAWPILLKGKDVVAIAKTGSGKTCGFLLPALA 63

Query: 59  --MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             M  +  + R     P  ++L PTRELA Q+ D   K+        A+L GG     Q 
Sbjct: 64  SIMQLLDGRWRPGAVTPTVIVLAPTRELAIQIHDECAKFCPAAGCRSAVLYGGAAKGDQL 123

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNN-----IEILVIDEADRMLDMGFIPYIQNIT 171
           + L  GADV++ TPGR+ D                   +V+DEADRMLDMGF P I+ I 
Sbjct: 124 RALRSGADVVVATPGRLNDFLEPPPGFTAPVSAVKASYVVLDEADRMLDMGFEPQIKKIF 183

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT--PSSTAETIEHCFVATYAQYS 229
            L P  RQT++F+AT    +QK++++F   P  I++ +     TA       V    +  
Sbjct: 184 KLCPSARQTVMFTATWPKAVQKIADSFTTKPIHIQIGSGGDKLTANKSITQTVEVLEEEE 243

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVN-LCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           K    +  L +        I+F   K+          +    S  AIHG+ DQ  R  +L
Sbjct: 244 KFDRCVAILKKELGKDDTCIMFAGTKRRCDFLDRRLKQSGFSSAGAIHGDKDQYEREMVL 303

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            NF+ G   ++VA+D+AARGLDIP V  V  +D P + E+Y+HRIGRTGRAG+ GKAFT 
Sbjct: 304 DNFRRGRGNILVATDVAARGLDIPGVAAVLVYDFPLQVEDYVHRIGRTGRAGKEGKAFTF 363

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
             K++    + +  +++     +   L ++ 
Sbjct: 364 FTKDNRGAANELIDILQGAGQTVPLALQAMQ 394


>gi|221131178|ref|XP_002164853.1| PREDICTED: similar to BAT1 [Hydra magnipapillata]
          Length = 433

 Score =  143 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 92/375 (24%), Positives = 167/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 49  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDIVCQAKSGMGKTAVFVLATLQQ 108

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE   ++V +             ++  + F KY  N  + V      +  + Q  K    
Sbjct: 109 LEPVDSQVSVLVMSHTRELAFQVSKEYERFSKYLPNTKVAVFFGGLSVKKDEQTLKTNCP 168

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L +    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 169 HIVVGTPGRILALARDKVLNLKHVKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 228

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  E++ V + F+Q+P  + V+  +                  K   L        
Sbjct: 229 FSATLNKEMRLVCKKFMQDPMEVYVDDETKLTLHGLTQHYCKLKDNEKNRKLFDL--LDA 286

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF    +  + L + L +Q F   AIH ++ Q  R+     FK+   +++VA+
Sbjct: 287 LEFNQVIIFVKSVQRCIALSNLLVEQNFPAIAIHRSMPQEERISRYRQFKDFQKRILVAT 346

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDAIE 361
           +L  RG+DI  V  V N+D+P  ++ Y+HR+ R GR G  G A + V+ +ED K ++ ++
Sbjct: 347 NLFGRGMDIERVNIVVNYDMPEDSDTYLHRVARAGRFGTKGLAISFVSDEEDAKVLNGVQ 406

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 407 DRFEVNVSELPAEID 421


>gi|159125027|gb|EDP50144.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus fumigatus
           A1163]
          Length = 674

 Score =  143 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 136/396 (34%), Positives = 206/396 (52%), Gaps = 22/396 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+   
Sbjct: 190 FTNPPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 249

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                              GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 250 AFQTGPSPVPAQASGQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVV 309

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 310 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQ 369

Query: 167 IQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 370 IRRIVEGEDMPNVNERQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVE 429

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +       +L +  T    +IF   K+    L   L  Q F   AIHG+  QR
Sbjct: 430 YVEDHDKRSVL--LDILHTHGTSGLTLIFVETKRMADALSDFLLNQRFPATAIHGDRTQR 487

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 488 ERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 547

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A     + +   +  +  L+++    +   L S+
Sbjct: 548 GIATAFFNRGNRGVVRELIDLLKEAHQEVPSFLESI 583


>gi|119500998|ref|XP_001267256.1| ATP dependent RNA helicase (Dbp1), putative [Neosartorya fischeri
           NRRL 181]
 gi|134034091|sp|A1CXK7|DED1_NEOFI RecName: Full=ATP-dependent RNA helicase ded1
 gi|119415421|gb|EAW25359.1| ATP dependent RNA helicase (Dbp1), putative [Neosartorya fischeri
           NRRL 181]
          Length = 676

 Score =  143 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 136/396 (34%), Positives = 206/396 (52%), Gaps = 22/396 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+   
Sbjct: 192 FTNPPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 251

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                              GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 252 AFQTGPSAVPAQASGQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVV 311

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 312 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQ 371

Query: 167 IQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 372 IRRIVEGEDMPNVNERQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVE 431

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +       +L +  T    +IF   K+    L   L  Q F   AIHG+  QR
Sbjct: 432 YVEDHDKRSVL--LDILHTHGTSGLTLIFVETKRMADALSDFLLNQRFPATAIHGDRTQR 489

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 490 ERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 549

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A     + +   +  +  L+++    +   L S+
Sbjct: 550 GIATAFFNRGNRGVVRELIDLLKEAHQEVPSFLESI 585


>gi|9955400|dbj|BAB12216.1| vasa homolog [Ciona savignyi]
          Length = 688

 Score =  143 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 127/387 (32%), Positives = 202/387 (52%), Gaps = 11/387 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            F   GL   V+  V  A Y +PTP+Q  +IP++    D+   AQTG+GKTA+F+LP   
Sbjct: 232 TFEVAGLPETVLANVKRANYERPTPVQKYSIPIINADRDLMACAQTGSGKTAAFLLPVLT 291

Query: 59  ---MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                 +     +  + PR +++ PTREL  Q+     K+ +   +   +  GG     Q
Sbjct: 292 KLITNGLQSSQFSEKQTPRAIVVGPTRELIYQIFLEARKFSRGTVVRPVVAYGGTSMNHQ 351

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----IT 171
            + L+RG  +LI TPGR++D  NRG + ++++E +++DEADRMLDMGF   I+       
Sbjct: 352 IRDLQRGCHILIATPGRLMDFINRGLVGLDHVEFVILDEADRMLDMGFETEIRKLASSPG 411

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 R TL+FSAT  DE+Q+++ +FL+             A T     +    Q  K+
Sbjct: 412 MPSKSDRHTLMFSATFPDEIQRLAHDFLREDFLFLTVGRVGGACTDVTQSIIQVDQDDKR 471

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL+ +    +T    ++F   K+    L   L ++G    +IHG+  Q+ R + L +F
Sbjct: 472 AKLLELISDVAETRSRTLVFVETKRGADFLACMLSQEGCPTTSIHGDRLQQEREQALRDF 531

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-A 350
           K     +++A+ +AARGLDIP V HV N+D+P   + Y+HRIGRTGR G  G+A T    
Sbjct: 532 KSAVCPILIATSVAARGLDIPKVEHVINYDMPKEIDEYVHRIGRTGRCGNLGRATTFYDN 591

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSS 377
            +D +   ++ K++ +    + G L  
Sbjct: 592 NKDGELARSLVKILSEAQQEVPGWLEE 618


>gi|9955402|dbj|BAB12217.1| vasa homolog [Ciona savignyi]
          Length = 770

 Score =  143 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 127/387 (32%), Positives = 202/387 (52%), Gaps = 11/387 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            F   GL   V+  V  A Y +PTP+Q  +IP++    D+   AQTG+GKTA+F+LP   
Sbjct: 314 TFEVAGLPETVLANVKRANYERPTPVQKYSIPIINADRDLMACAQTGSGKTAAFLLPVLT 373

Query: 59  ---MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                 +     +  + PR +++ PTREL  Q+     K+ +   +   +  GG     Q
Sbjct: 374 KLITNGLQSSQFSEKQTPRAIVVGPTRELIYQIFLEARKFSRGTVVRPVVAYGGTSMNHQ 433

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----IT 171
            + L+RG  +LI TPGR++D  NRG + ++++E +++DEADRMLDMGF   I+       
Sbjct: 434 IRDLQRGCHILIATPGRLMDFINRGLVGLDHVEFVILDEADRMLDMGFETEIRKLASSPG 493

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 R TL+FSAT  DE+Q+++ +FL+             A T     +    Q  K+
Sbjct: 494 MPSKSDRHTLMFSATFPDEIQRLAHDFLREDFLFLTVGRVGGACTDVTQSIIQVDQDDKR 553

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL+ +    +T    ++F   K+    L   L ++G    +IHG+  Q+ R + L +F
Sbjct: 554 AKLLELISDVAETRSRTLVFVETKRGADFLACMLSQEGCPTTSIHGDRLQQEREQALRDF 613

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-A 350
           K     +++A+ +AARGLDIP V HV N+D+P   + Y+HRIGRTGR G  G+A T    
Sbjct: 614 KSAVCPILIATSVAARGLDIPKVEHVINYDMPKEIDEYVHRIGRTGRCGNLGRATTFYDN 673

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSS 377
            +D +   ++ K++ +    + G L  
Sbjct: 674 NKDGELARSLVKILSEAQQEVPGWLEE 700


>gi|321252297|ref|XP_003192357.1| ATP-dependent RNA helicase of the DEAD-box family involved in
           ribosomal biogenesis ; Dbp3p [Cryptococcus gattii WM276]
 gi|317458825|gb|ADV20570.1| ATP-dependent RNA helicase of the DEAD-box family involved in
           ribosomal biogenesis, putative ; Dbp3p [Cryptococcus
           gattii WM276]
          Length = 639

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 113/404 (27%), Positives = 195/404 (48%), Gaps = 12/404 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LSP    A+   G+   T +Q +TIP +L   DV G A+TG+GKT +F++P + +
Sbjct: 163 FSTLNLSPPTTAAIERMGFETMTEVQARTIPPLLAGKDVLGAARTGSGKTMAFLVPSVEL 222

Query: 63  LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   R +       +I+ PTRELA Q+    ++  ++++ T  +L+GG   +A+  KL +
Sbjct: 223 LSTLRFKPVNGTGVIIISPTRELALQIFGVAKELMQDHSQTFGVLMGGANRKAEADKLVK 282

Query: 122 GAD-VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS-LVPFTRQ 179
           G + ++      +    N    +  N++ LVIDEADR+L++GF   ++ I   L    RQ
Sbjct: 283 GVNLIVATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEEEMKQIIKLLPSENRQ 342

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           ++LFSAT T ++  ++   L+          +  A T +          S +  +L    
Sbjct: 343 SMLFSATQTTKVTDLARISLRPGPLYINVDETKEASTADMLEQGYVVCESDQRFMLLFTF 402

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  I+F +   +V      L      V  +HG   Q+ R      F      ++
Sbjct: 403 LKKNLKKKVIVFFSSCNSVKYHAELLNYIDVPVLDLHGKQKQQKRTNTFFEFINAPAGIL 462

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+AARGLDIP V  +  FD P+   +YIHR+GRT RAG+ GK+   +   ++  +  
Sbjct: 463 LCTDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVGRTARAGKSGKSLLFLLPSELGFLRF 522

Query: 360 IE---------KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           ++         +  +KKV  +   L SL      ++ +  +  R
Sbjct: 523 LKVAKVPLNEYQFPQKKVADVQKQLESLISKNHYLNTSARDGYR 566


>gi|193678797|ref|XP_001952274.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
           [Acyrthosiphon pisum]
          Length = 621

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 120/384 (31%), Positives = 203/384 (52%), Gaps = 8/384 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D    P ++  +    +  P+P+Q +T P+++  HD+  IAQTGTGKT +F+LP    
Sbjct: 203 FEDY---PDILEEIQKQKFEVPSPVQCQTWPVIMSGHDLIAIAQTGTGKTLAFLLPAFIH 259

Query: 63  LEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           ++         + P  L+L PTREL  Q+    +KY       +++  G      Q + L
Sbjct: 260 IDFQPTPRSERKGPSILVLAPTRELVLQIESEVKKYSYKGIKAMSIYGGASS-GKQKEVL 318

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G +++I TPGR+ D    G + ++++  L++DEADRMLD+GF P I+     V   RQ
Sbjct: 319 RKGVEIVIATPGRLNDFVGSGAIDLSDVTFLILDEADRMLDLGFEPQIRVSLLRVRPDRQ 378

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++ SAT    ++++++++  NP ++ V +   T        +    +  K+  L    L
Sbjct: 379 TIMTSATWPPGVKRLAKSYTTNPIQVMVGSLDLTTVNTVKQDILIMDEEEKEVWL-DDFL 437

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +S       IIF N+K  V  L   L  +G+ V +IHG  +Q  R   L + + G + ++
Sbjct: 438 KSCSADDKIIIFVNRKVTVDQLSSDLCMKGYIVESIHGGREQCDREMALESLRNGEVNIL 497

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RG+DI D+  V N+D     E Y+HR+GRTGRAG+ G A TL+ + D      
Sbjct: 498 IATDVASRGIDINDITVVINYDFTKDIEEYVHRVGRTGRAGKTGLAITLMTRRDWGKAKD 557

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE 383
           + +++EK    +  +L  +    E
Sbjct: 558 LVEVMEKSGQDVPPELQEMASRYE 581


>gi|330842567|ref|XP_003293247.1| hypothetical protein DICPUDRAFT_41749 [Dictyostelium purpureum]
 gi|325076448|gb|EGC30233.1| hypothetical protein DICPUDRAFT_41749 [Dictyostelium purpureum]
          Length = 551

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 131/376 (34%), Positives = 204/376 (54%), Gaps = 3/376 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   G    ++ A+       PTPIQ + IP+ L   D+  IA+TG+GKTA+F+ P + 
Sbjct: 109 SFGHYGFENLLLQAISKQNIDTPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSIP 168

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       +   P  L L PTRELA Q+     KY K + L   +L GG+  + Q K+L
Sbjct: 169 HIMDQPYLEKGDGPIALFLAPTRELAQQIYLETLKYSKYFKLRTTVLYGGVSKQQQCKEL 228

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++++ TPGR++D        +N +  LV+DEAD+M D GF P + +I + V   RQ
Sbjct: 229 KAGCEIVVSTPGRLIDMIKLKATKLNRVTYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQ 288

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    ++  + + L +P +I +    S    I        ++  K   L+  L 
Sbjct: 289 TLLFSATFKQNVEDFARSILTDPIKISIGQAGSANSDITQIVQVLKSESEKWSWLIDNLP 348

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +   + +IF + K +V  L  +L   GF  C+IHG+ +Q  R + +  FKEG + ++
Sbjct: 349 NLLNQG-SVLIFVSMKASVEELSKNLTNFGFKTCSIHGDKNQYERSQTIQTFKEGKVNIL 407

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDIP + +V NFD     E++ HRIGRTGRAG  G A+TL+  +D+     
Sbjct: 408 IATDVAARGLDIPLIKNVINFDPSRDIESHTHRIGRTGRAGAKGDAYTLITPKDVNFAAD 467

Query: 360 IEKLIEKKVDWLNGDL 375
           + K +E    +++ DL
Sbjct: 468 LVKNLEGANQYVSSDL 483


>gi|309362056|emb|CAP28713.2| hypothetical protein CBG_09074 [Caenorhabditis briggsae AF16]
          Length = 747

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 135/431 (31%), Positives = 206/431 (47%), Gaps = 34/431 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + G   +V  AV + GY++PTPIQ + IP+ LQ  DV G+A+TG+GKTA+F+LP+L 
Sbjct: 319 NWEESGFPDEVYRAVQEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLV 378

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +E+     + P  +IL PTRELA Q+ +   K+GK   +    +IGG   E Q
Sbjct: 379 WITSLPKIERQEHSDQGPYAIILAPTRELATQIEEETNKFGKLLGIRTVSVIGGASREEQ 438

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL  G +V+I TPGR++D      LL+N    +++DEADRMLDMGF P +Q I   +P
Sbjct: 439 GMKLRMGVEVVIATPGRLMDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKILEYLP 498

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            +           +E            ++  + T + +                      
Sbjct: 499 ASNMKKDTDEFDNEEALMKGFETRDKYRQTVMFTATMSPAIERLARQYLRRPAVVHIGNA 558

Query: 215 -ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            +  E      Y     +       + SQ      I+F N+K    +L   L K G    
Sbjct: 559 GKPTERVEQVVYMITKDRKPKKLLEVISQHDKYPIIVFVNRKHGADSLAKGLAKVGKKTS 618

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            +HG   Q +R   L   K+   +++VA+D+A RG+DI DV  V N+D+    E+Y HRI
Sbjct: 619 VLHGGKGQDAREYALKALKDQETKILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRI 678

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           GRTGRAG+HGKA T +  +D      +++ +      L   +SS  P L   + A+    
Sbjct: 679 GRTGRAGKHGKAITFLTADDTAVYYDLKQCL------LESPISSCPPELANHEAARAKPG 732

Query: 394 RKNNPIPQKST 404
           +  +   Q  T
Sbjct: 733 QITSKKRQDET 743


>gi|254774280|ref|ZP_05215796.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 542

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 130/359 (36%), Positives = 198/359 (55%), Gaps = 7/359 (1%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM 72
           + A+ D GY  PT IQ  TIP ++   DV G+AQTGTGKTA+F +P+L+ ++      + 
Sbjct: 1   MRAIADVGYETPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSNIDVASTATQA 60

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-ERGADVLICTPG 131
              L+L PTRELA QVA+ F +YG +      L I G    A      +RGA V++ TPG
Sbjct: 61  ---LVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYAVQLAGLKRGAHVVVGTPG 117

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R++DH  RG L +++++ LV+DEAD ML MGF   +  I S  P  +Q  LFSATM   +
Sbjct: 118 RVIDHLERGTLNLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVALFSATMPPAI 177

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
           +K++  +L +P  +     ++TAE I   ++                ++  + M   +  
Sbjct: 178 RKLTAKYLHDPLEVSTKAKTTTAENISQRYIQVAGPRKMDALTRVLEVEPFEAMIVFVRT 237

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
               + V     +         AI+G+I Q  R + ++  K+G I ++VA+D+AARGLD+
Sbjct: 238 KQATEEVAERLRARGFS---AAAINGDIPQGQRERTVAALKDGGIDILVATDVAARGLDV 294

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
             + HV N+D+P+  E+Y+HRIGRTGRAGR G A   V+  +   + AIEK   + +  
Sbjct: 295 ERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLKAIEKATRQPLTE 353


>gi|256087842|ref|XP_002580072.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665577|emb|CAZ36311.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 454

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 141/454 (31%), Positives = 233/454 (51%), Gaps = 18/454 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+  ++   +   G+VKP+ IQ+K IP  L++ D+ G+A+TG+GKTA+F +P+L 
Sbjct: 5   SFKELGVCNEICDVISTLGWVKPSEIQLKAIPAALRKKDIVGLAETGSGKTAAFAIPILQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK--KL 119
            L    ++ R    LIL PTRELA QV   F + G  + L V  L+GG   E Q +  K 
Sbjct: 65  DL---LSKPRHNFALILTPTRELALQVKCLFMELGDKFGLKVVCLVGGQHVEDQVRDLKR 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   ++      +    N  +L +N++   V+DEAD+ML+  F   +  I + +   +Q
Sbjct: 122 LKFHVIVGTPGRVVYHLENTKELRLNHVRYFVLDEADQMLEDTFEQQLAFIITKLHPNKQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T L+SATMT  + K+ +   ++P  +EV++  S  + ++H FV    +      +   L 
Sbjct: 182 TFLYSATMTQNVDKIRKVCTKSPVILEVSSKYSKVDKLDHAFVFIPDKEKDFYLIYLLLS 241

Query: 240 QSQDTMKNGIIFCNQKKN----VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                    IIF +  +     V  L    +    +   ++G + Q  R   L +F+ G 
Sbjct: 242 SKSADKSRSIIFTSTWRESFRIVAMLKSLADVISAASAPLNGVMQQDKRQSSLFDFRTGR 301

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPN------RAENYIHRIGRTGRAGRHGKAFTLV 349
           + ++VA+DLA+RGLD PDV  V N+DVP        A+ YIHR+GRT RAGRHG+A T V
Sbjct: 302 VSILVATDLASRGLDFPDVDLVINYDVPRRPSWSDSAKAYIHRVGRTARAGRHGRAITFV 361

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSS-LNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
               +  + AIE  + +++  L    +  L+  L +  I     AR N  I +K     +
Sbjct: 362 TPYSVTRLKAIESALNERIPQLPWPGTDCLDSQLRQQVIQADKEARANLRIKEKQKQLKK 421

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADS 442
           ++K+ S+       K S +  ++  D +E +++S
Sbjct: 422 KRKDSSNNNRLPKAKRSHQGKEV--DPEETNSES 453


>gi|67619527|ref|XP_667652.1| dead box RNA helicase [Cryptosporidium hominis TU502]
 gi|54658801|gb|EAL37417.1| dead box RNA helicase [Cryptosporidium hominis]
          Length = 480

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 106/373 (28%), Positives = 173/373 (46%), Gaps = 11/373 (2%)

Query: 1   MDFADL----GLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF 55
           + F ++     L   V+  +++ + Y KPTPIQ + IPL+    D+   + TG+GKT  +
Sbjct: 84  LTFKEIKESGNLPDWVLDNIMNISKYQKPTPIQSQVIPLLFSGVDLLVQSPTGSGKTLCY 143

Query: 56  VLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +LP+L  L+           LIL PTRELA Q+    +     +             +  
Sbjct: 144 ILPILGRLKN---DKVYCANLILSPTRELAQQIVREIKIILDIHGKKYRCRYISGKIDKA 200

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            +   +  D+ + TP R+ D      + +    ++V+DE D++LDMGF P I  I S   
Sbjct: 201 QESNTKRLDIAVSTPYRLADICRNNIINLQGCSMIVLDEVDKLLDMGFAPQIDEILSHSN 260

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +   +  A  +  L ++  N   +  +  V              +      +K  A +
Sbjct: 261 IPKGGKVQIAAFSATLPQIVINLADSIMKSPVKVTLGHRLAASSTIIQELVCVTKDDAKI 320

Query: 236 Q---QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           +   QL++    M   ++F N K +   L   L      V AIH ++ +  R  I+  F+
Sbjct: 321 ESLRQLIKQGKIMLPTLVFTNSKDDAQRLFKKLMYDNLIVEAIHSDMPKVKRDNIIQRFR 380

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G I +++ +DL ARG+D  +V  V N+D P+   NYIHR+GR GRAGR G A T    +
Sbjct: 381 TGKIWILICTDLMARGVDFKNVSCVVNYDFPHSPSNYIHRVGRCGRAGRTGYAITFFTLK 440

Query: 353 DIKHIDAIEKLIE 365
           DI  I +I K+I+
Sbjct: 441 DIPKIKSIAKVIK 453


>gi|89890271|ref|ZP_01201781.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
 gi|89517186|gb|EAS19843.1| ATP-dependent RNA  helicase [Flavobacteria bacterium BBFL7]
          Length = 377

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 130/369 (35%), Positives = 200/369 (54%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS +++ A+ +  +  PTPIQ   +P +L   DV GIA+TG+GKT ++ LP+L
Sbjct: 1   MSFESLGLSNQLLFALRENQFSHPTPIQKLAMPDILAGKDVLGIAKTGSGKTMAYALPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             LE   +  R    LIL PTRELAAQV++ F  Y K      + + + G        + 
Sbjct: 61  QRLEGIESENRHITALILVPTRELAAQVSEVFIPYSKALTKPLITMAVYGGASINPQMRK 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+L+ TPGR+L+      + + N++ LV+DEAD+ML  GF   +  I  L+P  RQ
Sbjct: 121 MNNVDILVATPGRLLELIEANAVHLKNVKALVLDEADKMLTKGFKKELDQILKLLPNKRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT+++++ ++    L +P      +     E I       Y     K   L + L
Sbjct: 181 NLLFSATLSEDVDELQRVLLNDPV---TASVEEKEEDISLIKQTGYRVTENKKGALLRHL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +  M   +IFC+    V ++   L+K G +  AIH    Q +R   LS FK G +  +
Sbjct: 238 MKEKEMTQVLIFCSSTYQVDHVNDKLKKNGIASKAIHSKKSQGARNSALSEFKSGELTAL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++DL ARG+DI  +  V N+++P   ++++HRIGRTGRA   G+A T ++ E+  H   
Sbjct: 298 VSTDLLARGIDIEFLPFVVNYELPRSPKDFVHRIGRTGRAENPGEAITFISSEESHHWRV 357

Query: 360 IEKLIEKKV 368
           I+K ++ KV
Sbjct: 358 IQKKMKIKV 366


>gi|62858607|ref|NP_001016345.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 [Xenopus (Silurana)
           tropicalis]
 gi|89266955|emb|CAJ81385.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 [Xenopus (Silurana)
           tropicalis]
          Length = 479

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 98/380 (25%), Positives = 171/380 (45%), Gaps = 13/380 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  L L  +++  +   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 94  SFEKLHLKDELLRGIYAMGFNRPSKIQENALPMMLADPPQNLIAQSQSGTGKTAAFVLAM 153

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++    +   P+ + L PT ELA Q     E+ GK  N    +         +  ++
Sbjct: 154 LSRVDA---KKTYPQCMCLSPTFELALQTGKVVEEMGKFCNGIKVIYAVRGNRPGKGTQI 210

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E    +             R   + N    ++ +    +   G   +   +   +P T Q
Sbjct: 211 EAQIVIGTPGTVLDWCFKLRLINVKNISVFVLDEADVMINVQGHSDHSVRVKRSMPKTCQ 270

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D +   +E  + +P  I++     T + I+  +     +  K  AL    +
Sbjct: 271 MLLFSATFGDSVWAFAERIVPDPNIIKLKKEELTLDNIQQFYDKCENKEQKYSALC--NM 328

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   I+FC  +K    L   + + G  V  + G +    R +++  F+EG  +++
Sbjct: 329 YGIITIAQAIVFCQTRKIANWLSRHMLEDGHQVALLSGELSVCDRAEMIQRFREGKDKVL 388

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRA------ENYIHRIGRTGRAGRHGKAFTLVAKED 353
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  L+    
Sbjct: 389 VTTNVCARGIDVEQVSIVVNFDLPVNVDGSVDFETYLHRIGRTGRFGKKGIAVNLIENSF 448

Query: 354 IKHIDAIEKLIEKKVDWLNG 373
           +  +  IE+    K+  LN 
Sbjct: 449 VYMLKEIEEHFNTKIKKLNS 468


>gi|323338408|gb|EGA79633.1| Dhh1p [Saccharomyces cerevisiae Vin13]
          Length = 448

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 112/363 (30%), Positives = 181/363 (49%), Gaps = 7/363 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
            + +AG+ KP+PIQ + IP+ +   D+   A+ GTGKTA+FV+P L  ++    ++   +
Sbjct: 2   GIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP---KLNKIQ 58

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            LI+ PTRELA Q +      GK+  ++  +  GG        +L     +L+ TPGR+L
Sbjct: 59  ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVL 118

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D  +R    +++  + ++DEAD+ML   F   I+ I S +P T Q+LLFSAT    +++ 
Sbjct: 119 DLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPXTHQSLLFSATFPLTVKE- 177

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
              F+                T++           ++       L S+  +   IIFCN 
Sbjct: 178 ---FMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNS 234

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
              V  L   +   G+S    H  + Q+ R K+   F++G ++ +V SDL  RG+DI  V
Sbjct: 235 TNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAV 294

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
             V NFD P  AE Y+HRIGR+GR G  G A  L+   D  ++  IE+ +  ++  +   
Sbjct: 295 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 354

Query: 375 LSS 377
           +  
Sbjct: 355 IDK 357


>gi|320582556|gb|EFW96773.1| ATP-dependent RNA helicase [Pichia angusta DL-1]
          Length = 568

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 97/391 (24%), Positives = 172/391 (43%), Gaps = 8/391 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFADL LS   +  + D G+ K T +Q +TIP +L   DV G A+TG+GKT +F++P + 
Sbjct: 113 DFADLHLSEPTMKGIQDMGFTKMTEVQARTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 172

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVAD--NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +L   + + R     I+       A        E    +      L+ G    +   K  
Sbjct: 173 LLYSLKFKPRNGAGAIVITPTRELALQIFGVARELMAHHSQTLGILIGGANRRQEAEKLA 232

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    ++      +    N    +  N++ L+IDEADR+L++GF   ++ I  ++P  ++
Sbjct: 233 KGVNLIIATPGRLLDHLQNTKGFIFKNLKTLIIDEADRILEIGFEDEMKQIVKILPNEKR 292

Query: 180 TLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             + FSAT T +++ ++   L                T +          S K  LL   
Sbjct: 293 QSMLFSATQTTKVEDLARVSLNKAPLYINVHQDRETSTADGLEQGYVVCDSDKRFLLLFS 352

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +    V      L      V  +HG   Q+ R      F      +
Sbjct: 353 FLKRNLKKKVIVFLSSCNCVKYYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGI 412

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP+V  +  FD P+   +YIHR+GRT R  +  GK+   +   ++  +
Sbjct: 413 LICTDVAARGLDIPEVDWIIQFDPPDDPRDYIHRVGRTARGSKGKGKSLMFLTPSELGFL 472

Query: 358 DAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
             + K  +  ++        ++++   LE++
Sbjct: 473 RYL-KAAKVPLNEYEFPANKIANVQSQLEQL 502


>gi|260808869|ref|XP_002599229.1| hypothetical protein BRAFLDRAFT_64422 [Branchiostoma floridae]
 gi|229284506|gb|EEN55241.1| hypothetical protein BRAFLDRAFT_64422 [Branchiostoma floridae]
          Length = 436

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 132/393 (33%), Positives = 205/393 (52%), Gaps = 22/393 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +  A     +  PT IQ + IPL L+  DV G+A+TG+GKT +F LP+L 
Sbjct: 22  TFKDLGVVDVLCEACEHLKWTTPTKIQTEAIPLALEGKDVIGLAETGSGKTGTFALPILQ 81

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G +  +   +++GGI    Q  +L +
Sbjct: 82  SLLEKPQRLFA---LVLTPTRELAFQISEQFEALGSSIGIKCVVVVGGIDMVTQALQLAK 138

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGR++DH    K         ++                 I  ++P  R T 
Sbjct: 139 KPHVIIATPGRLVDHLENTKGFNLRALKYLV---------------DKILKVIPRERHTY 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT ++ K+    L NP ++EVN+     +T++    +     SK   +    + +
Sbjct: 184 LFSATMTKKVAKLQRASLSNPVKVEVNSKY---KTVDTLQQSYLFIPSKYKDVYLVSILN 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + ++FC+   N       L   GF+   +HG + Q SR+  L  FK  +  +++A
Sbjct: 241 ELAGNSFMVFCSTCNNTQRTAFLLRNLGFNAIPLHGQLSQNSRLGALHKFKAKSRSILIA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDIP V  V NFD+P  +++YIHR+GRT RAGR GKA T V + D++    IE
Sbjct: 301 TDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIE 360

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
            LI KK+     +   +    E++  AQ  +AR
Sbjct: 361 HLIGKKLPLYKTEEEEVMVMNERVMEAQ-RYAR 392


>gi|195389156|ref|XP_002053243.1| GJ23450 [Drosophila virilis]
 gi|194151329|gb|EDW66763.1| GJ23450 [Drosophila virilis]
          Length = 829

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 122/431 (28%), Positives = 215/431 (49%), Gaps = 3/431 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  +++  +   GY  PTPIQ KTIPL+L+  DV  +A+TG+GKTA F++PM   
Sbjct: 40  FQSLGLGFELLKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPMFEK 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++        R LIL PTRELA Q     +  G+   L   L++GG   ++Q   +   
Sbjct: 100 LQRREPTKGA-RALILSPTRELAVQTYKFIKDLGRFMELKTILVLGGDSMDSQFSAIHTC 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR L       L +N+IE +V DEADR+ +MGF   +      +P +RQ ++
Sbjct: 159 PDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQMVM 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L +P  I ++  S   ET+            +  AL+  L    
Sbjct: 219 FSATLPKLLVEFARAGLSDPVLIRLDVESKLPETL-ALKFLYCRPDDRYTALVVLLKYVI 277

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   + +V  + + L + G S  +++ ++D  +R    + F    + +++ +
Sbjct: 278 PQQAQTVVFAGTQHHVELISYILTQAGISNTSVYSSLDPAARKINTAKFASKKVSVLIVT 337

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP + +V N   P   + ++HR+GR  RAGR G A+++ + +D  H+  +  
Sbjct: 338 DVAARGIDIPSLDYVVNLHFPGIPKLFVHRVGRCARAGRTGTAYSIFSTDDTAHLLDLHL 397

Query: 363 LIEKKVDWLN-GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
            + +  +  +   + ++   L + +       +K++ I       +   K Y S +    
Sbjct: 398 FLNRPFNINDSSSIGTIPQDLLEEEYLSVAEIKKSHHIAGVLRTSENAYKKYLSSRPTAS 457

Query: 422 LKESEKISKLQ 432
              + +  K++
Sbjct: 458 TDANARAKKIK 468


>gi|119175420|ref|XP_001239942.1| hypothetical protein CIMG_09563 [Coccidioides immitis RS]
 gi|118582048|sp|Q1DJF0|DED1_COCIM RecName: Full=ATP-dependent RNA helicase DED1
          Length = 659

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 132/397 (33%), Positives = 205/397 (51%), Gaps = 23/397 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+  
Sbjct: 176 TFTNPPLDDHLISNIKLATYKTPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILS 235

Query: 60  --------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105
                               GR R   P +LIL PTREL +Q+ D   K+     +   +
Sbjct: 236 QAFKNGPSAVPTQNANQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCV 295

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P
Sbjct: 296 VYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEP 355

Query: 166 YIQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
            I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I    
Sbjct: 356 QIRRIVEGEDMPPVNGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKV 415

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
                   +        +         +IF   K+   +L   L  Q F   AIHG+  Q
Sbjct: 416 EYVEDADKRSV---LLDILHTHGTGLTLIFVETKRMADSLSEFLINQNFPATAIHGDRTQ 472

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG 
Sbjct: 473 RERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGN 532

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            G +     + +   +  + +L+++    +   L ++
Sbjct: 533 TGLSTAFFNRGNRGVVRDLIELLKEAHQEVPAFLENI 569


>gi|253771020|gb|ACT35658.1| PL10-like protein [Haliotis asinina]
          Length = 775

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 141/397 (35%), Positives = 208/397 (52%), Gaps = 20/397 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F D  L   +   +  + Y KPTP+Q  +IP+VL R D+   AQTG+GKTA+F++P+  
Sbjct: 300 SFEDCELGEIIRNNIALSKYTKPTPVQKYSIPIVLGRRDLMACAQTGSGKTAAFLVPILN 359

Query: 60  -----------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
                          + G+   + P  L+L PTRELA+Q+ D   K+     +   ++ G
Sbjct: 360 QIYDKGPGQVPQQQRQYGKRTKQYPIALVLAPTRELASQIYDEARKFAYRSRVRPCVVYG 419

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G    AQ + L+RG  +L+ TPGR++D   RGK+ +   + LV+DEADRMLDMGF P I+
Sbjct: 420 GADIGAQMRDLDRGCHMLVATPGRLVDMVERGKIGLEYCKFLVLDEADRMLDMGFEPQIR 479

Query: 169 NITSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
            I           RQTL+FSAT   E+Q ++ +FL+N   + V    ST+E I    V  
Sbjct: 480 LIVEKNGMPVSGERQTLMFSATFPKEIQILARDFLENYVFLAVGRVGSTSENITQKVVWV 539

Query: 225 YAQYSKKCALLQQL---LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
                +   L       + S       + F   KK    L   L+K+G+   +IHG+  Q
Sbjct: 540 EENEKRSFLLDLINASGMFSSGPESLTLTFLETKKGADALEEFLQKEGYPATSIHGDRSQ 599

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R R   L  F+ G   ++VA+ +AARGLDIP+V HV NFD+P+  E Y+HRIGRTGR G 
Sbjct: 600 REREDALKVFRSGDRPILVATAVAARGLDIPNVRHVINFDLPSDIEEYVHRIGRTGRVGN 659

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            G A +   +++   I  +  L+ +    +   L S+
Sbjct: 660 LGLATSFFNEKNKNIIRDLLDLLVEANQEVPTWLESM 696


>gi|148239434|ref|YP_001224821.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7803]
 gi|147847973|emb|CAK23524.1| Putative ATP-dependent RNA helicase [Synechococcus sp. WH 7803]
          Length = 399

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 151/393 (38%), Positives = 222/393 (56%), Gaps = 6/393 (1%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR- 71
           + A+   GY  P+PIQ + IP V+   DV   AQTGTGKTA F LP+L  L  G+   R 
Sbjct: 1   MEALQAKGYSHPSPIQAQAIPAVIDGRDVMAAAQTGTGKTAGFTLPVLERLRHGKRAGRA 60

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
             R L+L PTRELAAQV +N + Y ++  L   ++ GG+    Q  +L  G D+L+ TPG
Sbjct: 61  QIRALVLTPTRELAAQVLENVKAYSRHLPLRSDVVFGGVKANPQIDRLRGGVDLLVATPG 120

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+LD   +G L  + +E LV+DEADRMLDMGFI  I+ +  L+P  RQTLLFSAT +  +
Sbjct: 121 RLLDLHQQGALRFDQLECLVLDEADRMLDMGFIHDIRRLIRLMPAKRQTLLFSATFSAPI 180

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
           +K++   L +P  ++V   + TA ++E                           +  ++F
Sbjct: 181 RKLASGLLHDPVHLQVTPENQTARSVEQVVHPCDMARKSDLLSHL---IRTGEWRQVLVF 237

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
              K     +   L K+G +  AIHGN  Q +R + L  FK+G+++++VA+D+AARG+DI
Sbjct: 238 SRTKHGANRVADRLNKEGLAAAAIHGNKSQGARTRALQGFKQGSVRVLVATDIAARGIDI 297

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
             + HV N D+PN AE+Y+HRIGRTGRAG  G A +LVA E+   + AIE+L  +++   
Sbjct: 298 QQLPHVVNLDLPNVAEDYVHRIGRTGRAGETGHAVSLVAAEEALLLKAIERLTGEELTRQ 357

Query: 372 NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
             D     P + K      +  R+ +P   ++ 
Sbjct: 358 TVD--GFEPTVLKAPPLDLSGGRRRSPGKPRAR 388


>gi|268530282|ref|XP_002630267.1| C. briggsae CBR-HEL-1 protein [Caenorhabditis briggsae]
 gi|187038867|emb|CAP21955.1| CBR-HEL-1 protein [Caenorhabditis briggsae AF16]
          Length = 424

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 99/395 (25%), Positives = 167/395 (42%), Gaps = 13/395 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q + IP  +   DV   A++G GKTA FV+  L  
Sbjct: 42  FRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE     V +             ++  + F KY     + V      I  + +    +  
Sbjct: 102 LEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCP 161

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    +    L      ++ +    + D      +Q I  + P  +Q ++
Sbjct: 162 HIVVGTPGRMLALARSGKLKLDKVKYFILDECDKMIGDADMRRDVQEIVKMTPQQKQVMM 221

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  EL+ V + F+Q+P  + V+  +               +  K        L   
Sbjct: 222 FSATLPKELRAVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNR--KLLNLLDI 279

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    K    L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 280 LEFNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVAT 339

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           DL  RG+DI  V  VFN+D+P  +++Y+HR+ R GR G  G A T V+ E D K +++++
Sbjct: 340 DLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKVLNSVQ 399

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
              +  +  L           EK+D A +   R N
Sbjct: 400 DRFDISITELP----------EKVDGATYIEGRTN 424


>gi|242023201|ref|XP_002432024.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212517382|gb|EEB19286.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 610

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 122/380 (32%), Positives = 197/380 (51%), Gaps = 7/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
            F + GL+  V+  V    Y  PTPIQ +  P+ L   ++ GIA+TG+GKT  FVLP  +
Sbjct: 202 SFEETGLADDVINIVRKLNYFAPTPIQSQGWPIALSGQNMVGIARTGSGKTLGFVLPAVI 261

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +    R   P  L+L PTREL  Q  +    + +   +    + GG     Q++ L
Sbjct: 262 HIQHQPKLERGDGPIALVLAPTRELVQQTQNVAIPFARASGIRSVAVYGGSDKYGQDRHL 321

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G ++ + TPGR+LD  N G   +     LV+DEADRM DMGF P I++I   +   RQ
Sbjct: 322 RNGTEICVATPGRLLDFLNSGTTNLERCTYLVLDEADRMFDMGFEPQIRSIIDQIRPDRQ 381

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQL 238
            L++SAT   E+++++E +L++  ++ V +   +    I        ++  KK       
Sbjct: 382 VLMWSATWPKEIKRLAEEYLKDYIQLNVGSQELTANPNINQIVHVCQSERDKKKLQNVLK 441

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +      +IF   K+   ++   L+  G+   ++HG   Q++R  IL     G I++
Sbjct: 442 EIGEQDEIKTLIFTATKQKSDSIAFWLQDLGYRCDSLHGGKTQKNRDFIL----RGRIKI 497

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ D+ +V N+D PN  E+YIHRIGRTGR    G ++T +  ED     
Sbjct: 498 LVATDVAARGLDVSDIRYVINYDYPNNMEDYIHRIGRTGRHNATGTSYTFLTDEDASKAG 557

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            +  ++ +    ++ DL +L
Sbjct: 558 DLISVLREANQNVDPDLENL 577


>gi|157693014|ref|YP_001487476.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
 gi|157681772|gb|ABV62916.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
          Length = 439

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 130/444 (29%), Positives = 216/444 (48%), Gaps = 15/444 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L   ++ A+ + G+ +PT IQ + IP VL+   V G +QTGTGKT +++LP++ 
Sbjct: 5   KFTTYELKSFIIDAIHELGFYEPTDIQKRIIPAVLKGESVIGQSQTGTGKTHAYLLPLIH 64

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ++  +  V+ +      E   ++  +     +       +   L IGG   +   +KL+
Sbjct: 65  SIDPSKEHVQVVITAPTRELANQIFKEAQTILKNASPEEEIKAKLYIGGTDKQKSIQKLK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRI D  +   L +     LVIDEAD MLDMGF+  +  I S +P   Q 
Sbjct: 125 NQPHLVVGTPGRIADLIHEQALNVYKATSLVIDEADLMLDMGFLEDVDRIGSQMPEQLQM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+ ++L+   + ++ NPK   V     TAE I+H  V +     +    L   + 
Sbjct: 185 LVFSATIPEKLKPFLKKYMDNPKYAHVEPKRITAENIQHILVPSKQ---RDKLKLLHEMV 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +      GIIF N K  V  +   L+++G  V  +HG +  R R K++    +     +V
Sbjct: 242 TNVQPYLGIIFANTKTTVDEIASFLQEKGMKVGVLHGGLTPRERKKVMKQIDDLEFTYIV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASDLAARG+DI  V HV N+++P+  + Y+HR+GRT RAG  G A T+    D   +  I
Sbjct: 302 ASDLAARGIDIKGVSHVINYELPSDLDFYVHRVGRTARAGSSGIAMTIYELADEDALIQI 361

Query: 361 EK----LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           EK       K +  ++G+    +  L++         +  N I +K+    R+ K     
Sbjct: 362 EKMGVVFENKTI--VHGEWRDADDRLKR-----QRRKKAPNEIEEKAKRLVRKPKAVKPG 414

Query: 417 KSHIPLKESEKISKLQQDIQENDA 440
                 +E +KI + ++   + + 
Sbjct: 415 YKKKMTREMDKIKRQERRKSKRNG 438


>gi|71020299|ref|XP_760380.1| hypothetical protein UM04233.1 [Ustilago maydis 521]
 gi|74700904|sp|Q4P6N0|HAS1_USTMA RecName: Full=ATP-dependent RNA helicase HAS1
 gi|46100049|gb|EAK85282.1| hypothetical protein UM04233.1 [Ustilago maydis 521]
          Length = 517

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 105/389 (26%), Positives = 190/389 (48%), Gaps = 7/389 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LS     A+   G+   T +Q + IP ++   DV G AQTG+GKT SF++P + +
Sbjct: 52  FSILDLSEPTRKAIDAMGFKTMTEVQARCIPPLMAGKDVLGAAQTGSGKTLSFLIPAIEM 111

Query: 63  LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + + + R     +I+ PTRELA Q+    ++   +++ T  +++GG    A+  KL++
Sbjct: 112 LHRLKFKPRNGTGAIIISPTRELALQIFGVAKELMAHHHQTFGIIMGGANRRAEADKLQK 171

Query: 122 GAD-VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           G + ++      +    N    + +N++ L IDEADR+L++GF   ++ I  ++P   + 
Sbjct: 172 GVNLIVATPGRLLDHLQNTKGFVFSNLKALCIDEADRILEIGFEDEMRQIVKILPNDNRQ 231

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSAT T ++Q ++   L+             A T+           S +  LL    
Sbjct: 232 SMLFSATQTTKVQDLARISLRPGPLYINVHADLAASTVSRLEQGYVVCESDRRFLLLFTF 291

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  I+F +   +V      L      V  +HG   Q+ R      +       +
Sbjct: 292 LKKNAGKKIIVFMSSCNSVKYHSDLLNFIDVPVLDLHGKQKQQKRTNTFFEYCNAPCGTL 351

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+AARGLDIP V  +  FD P+   +YIHR+GRT RAG  GK+   +   ++  +  
Sbjct: 352 LCTDVAARGLDIPSVDWIIQFDPPDDPRDYIHRVGRTARAGNSGKSLLFLLPTELGFLRF 411

Query: 360 IEKLIEKKVDWL---NGDLSSLNPPLEKI 385
           + K+ +  ++     +  ++++   LEK+
Sbjct: 412 L-KVAKVPLNEYTFPSDKVANVQGQLEKL 439


>gi|170579138|ref|XP_001894695.1| ATP-dependent RNA helicase An3 [Brugia malayi]
 gi|158598597|gb|EDP36460.1| ATP-dependent RNA helicase An3, putative [Brugia malayi]
          Length = 754

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 138/427 (32%), Positives = 214/427 (50%), Gaps = 28/427 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L P +   +  +GY +PTP+Q  +IP ++   D+   AQTG+GKTA+F++P++  
Sbjct: 291 FADLKLHPWIEGNIRLSGYGRPTPVQKYSIPTLMNNRDLMSCAQTGSGKTAAFLVPLINN 350

Query: 63  -------------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIG 108
                         ++   R + P  LIL PTREL+ Q+ +   K+     +T A L  G
Sbjct: 351 VLQAGPEALYKSTTQQNGRRRQYPAALILSPTRELSLQIYNESRKFAYRTPITSALLYGG 410

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
              +  Q  KL  G  +LI TPGR++D   +G + ++    LV+DEADRMLDMGF P I+
Sbjct: 411 RENYREQINKLRLGVHILIATPGRLIDVMEQGLIGLDGCRFLVLDEADRMLDMGFEPQIR 470

Query: 169 NI----TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
            I           R T +FSAT   E+Q ++++FL             +        +  
Sbjct: 471 QIVDLSKMPPKGQRVTAMFSATFPKEIQVLAQDFLMPNYVFLAVGRVGSTSENIMQKIVW 530

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
             ++ KK  L+  L   + +    ++F   K+   +L + L+K G++V AIHG++ Q  R
Sbjct: 531 VEEHEKKSFLMDLLDAGEPSA-LTLVFVETKRGASDLAYYLQKDGYNVVAIHGDLKQFDR 589

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            K L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P+  + Y+HRIGRTGR G  G 
Sbjct: 590 EKHLETFRSGVATILVATAVAARGLDIPNVKHVINYDLPSDIDEYVHRIGRTGRVGNVGL 649

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           A +    ++      + +L+ +    L          LEKI      +  +       S 
Sbjct: 650 ATSFFNDKNRNIARDLAELVVEANQELP-------EWLEKISADAQRYGTRPGRAKGGSR 702

Query: 405 --GFDRR 409
             G D R
Sbjct: 703 FGGRDHR 709


>gi|160940589|ref|ZP_02087933.1| hypothetical protein CLOBOL_05484 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436549|gb|EDP14316.1| hypothetical protein CLOBOL_05484 [Clostridium bolteae ATCC
           BAA-613]
          Length = 490

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 135/420 (32%), Positives = 223/420 (53%), Gaps = 13/420 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GLS ++   +   GY  PT +Q + +P VL   +V   +QTGTGKTA+F +P+   
Sbjct: 13  FGGYGLSGEITETLALLGYEHPTRVQEEVLPHVLAGRNVVVRSQTGTGKTAAFAIPVCEQ 72

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +        +P+ L+LEP+RELA QV+    + G+   L V  + GG P + Q + L + 
Sbjct: 73  IVW---EENLPQALVLEPSRELAVQVSQEIFRIGRKKRLKVPAVFGGFPIDKQIQTLRQK 129

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++DH  RG L +  +  LVIDEAD MLDMGF+  ++ I  L+P  RQTLL
Sbjct: 130 THIVVGTPGRVMDHVRRGSLKLTGVRYLVIDEADLMLDMGFMDEVRQIVGLLPEKRQTLL 189

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++++ ++E  +++   + +       ET      + Y     +     + +  +
Sbjct: 190 FSATLDEDVKNLAEETVKDAVSVFLE---QEGETPLPIRQSVYGVAQDQKYTAFKRVLMK 246

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  +  +IFC  ++ V  L   L +       IHG+++Q+ R+K +  F+ G  + ++A+
Sbjct: 247 ENPERAMIFCGTREMVQVLFQKLRRDRIFCGMIHGDMEQKERLKNVDAFRRGGFRYLIAT 306

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+D  DVG V N+D P   E Y+HRIGRTGR G+ G+A +LV +++I+ +   E 
Sbjct: 307 DVAARGIDFEDVGLVVNYDFPMGRETYVHRIGRTGRNGKAGRAASLVTEDEIRTLHKAEA 366

Query: 363 LIEKKVDWLNGDLSSLNP-------PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +   +  L    +             +K D   H   + +  I + S G  R+ K  S 
Sbjct: 367 YVGVPLPVLPCPETEEEEEKAFWALQRKKPDPGPHKGEKLDRSITRLSIGGGRKSKMRSG 426


>gi|154497003|ref|ZP_02035699.1| hypothetical protein BACCAP_01296 [Bacteroides capillosus ATCC
           29799]
 gi|150273402|gb|EDN00530.1| hypothetical protein BACCAP_01296 [Bacteroides capillosus ATCC
           29799]
          Length = 400

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 142/376 (37%), Positives = 211/376 (56%), Gaps = 7/376 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +++ADLGLS +V+ A+   GYV+ TP+Q   IP  ++  DV   A TGTGKT +F +PM+
Sbjct: 12  VNYADLGLSAEVMKAIDKKGYVRATPVQAGAIPYFMEWKDVIAKAPTGTGKTFAFGIPMV 71

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             ++     V+    L+L PTRELA Q+ D      +    +    L GG P E Q   L
Sbjct: 72  EHIDPESDAVQ---ALVLAPTRELALQIQDELRDLCEFKEGVRSVCLYGGAPIEKQITTL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   +++ TPGR++DH  R  + ++ +E +V+DEADRMLDMGFI  +  I   +   + 
Sbjct: 129 KKHPQIVVATPGRLMDHMKRRTVKLDKVETVVLDEADRMLDMGFIHDVTRILDQIKSRKN 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSAT++ E+  +S  + ++P  I V         I+   +    +  K   ++  L 
Sbjct: 189 LGLFSATISREVMDISWVYQRDPVEIVVRPDEENKPDIQQYRIDLEGRGDKLETMVALLT 248

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  I FCN K     L   L+ +G +  AIHG+I QR R K L  F+EG ++++
Sbjct: 249 HGGY--ERAIAFCNTKNMTDRLSGLLQMRGITAQAIHGDIQQRIREKTLQAFREGKMRVL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL-VAKEDIKHID 358
           VA+D+AARGLDI DV  VFN+DVP+  E YIHRIGRTGRA RHG A++L V   +   ++
Sbjct: 307 VATDVAARGLDIDDVDVVFNYDVPDEIEYYIHRIGRTGRAKRHGVAYSLVVGITEQMKME 366

Query: 359 AIEKLIEKKVDWLNGD 374
            I K  +  +  L  D
Sbjct: 367 QIAKNTKADITVLKYD 382


>gi|261340877|ref|ZP_05968735.1| ATP-dependent RNA helicase SrmB [Enterobacter cancerogenus ATCC
           35316]
 gi|288317308|gb|EFC56246.1| ATP-dependent RNA helicase SrmB [Enterobacter cancerogenus ATCC
           35316]
          Length = 442

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 137/440 (31%), Positives = 221/440 (50%), Gaps = 6/440 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ A+   G+ +PT IQ   IP  L+  DV G A TGTGKTA+++LP + 
Sbjct: 5   TFSELELDESLLNALESKGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPVLQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD+  +   N +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADHARELAANTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I++I     +  QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRNQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT   D ++  +E  L++P  +     +   + I   +        K      + L
Sbjct: 185 MLFSATLEGDAIKDFAERLLEDPVEVSATPSTRERKKIHQWYYRADNLEHKIEL--LKQL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+     I+F  +++ V  L   L   G + C + G + Q  R + +    +G + ++
Sbjct: 243 LKQEDATRTIVFVRKRERVHELAEILRNAGINNCYLEGEMAQVKRTEGIKRLTDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIPDV HV NFD+P   + Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGIAISLVEAHDHLLLQK 362

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           I + +++ +    ++G   +   P EK+       A       ++      R K      
Sbjct: 363 IGRYVDEPLKSRVIDGLRPTTRAPSEKMTGKPSKKALAKRAERKEKEKEKPRVKQRHRDT 422

Query: 418 SHIPLKESEKISKLQQDIQE 437
            ++  +     +  +   +E
Sbjct: 423 KNVGKRRKPSSAAPETKTEE 442


>gi|255576631|ref|XP_002529205.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223531323|gb|EEF33161.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 590

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 115/390 (29%), Positives = 193/390 (49%), Gaps = 7/390 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLS     A+ + G+   T IQ + IP +L   DV G A+TG+GKT +F++P + 
Sbjct: 105 SFESLGLSEPTRKAIQEMGFQYLTQIQARAIPPLLVGKDVLGAARTGSGKTLAFLIPAVE 164

Query: 62  ILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L       R     +++ PTRELA Q     +   K ++ T+ L+IGG   + + +++ 
Sbjct: 165 LLYNVHFAPRNGTGVVVICPTRELAIQTHAVAKDLLKYHSQTLGLVIGGSARKGEAERIV 224

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G ++L+ TPGR +    N    +  N++ L+IDEADR+L+  F   ++ I  ++P +RQ
Sbjct: 225 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKSRQ 284

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT T +++ ++    Q            T  T E         +S K  +L    
Sbjct: 285 TALFSATQTKKVEDLARLSFQITPVYIDVDDGRTKVTNEGLQQGYCVVHSAKRFILLYSF 344

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  ++F +   +V      L         IHG   Q+ R     +F +    ++
Sbjct: 345 LKRNLSKKVMVFFSSCNSVKFHSELLRYIQVECFDIHGKQKQQKRTTTFFDFCKAEKGIL 404

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHID 358
           + +D+AARGLDIP V  +  +D P+  + YIHR+GRT R  G  G A   +  E+++ + 
Sbjct: 405 LCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLR 464

Query: 359 AIEKLIEKKVDWLNGD---LSSLNPPLEKI 385
            + K  +  V     D   L+++   LEK+
Sbjct: 465 YL-KAAKVPVKEYEFDVKKLANVQSHLEKL 493


>gi|225559047|gb|EEH07330.1| ATP-dependent RNA helicase HAS1 [Ajellomyces capsulatus G186AR]
          Length = 631

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 124/411 (30%), Positives = 202/411 (49%), Gaps = 13/411 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L LS K + A+ D  +   T IQ + IP +L   DV G A+TG+GKT +F++P + 
Sbjct: 153 KFSELNLSDKTMKAIADMKFETMTEIQRRGIPPLLAGRDVLGAAKTGSGKTLAFLIPAVE 212

Query: 62  ILEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + R    +I+  PTRELA Q+     +   +++ T  ++IGG    A+ +KL 
Sbjct: 213 MLSALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAEKLT 272

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-VPFTR 178
           +G ++LI TPGR +    N    +  N++ LVIDEADR+L++GF   ++ I  +     R
Sbjct: 273 KGVNLLIATPGRLLDHLQNTQGFVFKNLKALVIDEADRILEVGFEDEMRQIIKILPAEDR 332

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT T +++ ++   L+               T+E          S K  LL   
Sbjct: 333 QTMLFSATQTTKVEDLARISLRQGPLYINVDHRKEHSTVEGLEQGYVICDSDKRFLLLFS 392

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +    V      L      V  +HG   Q+ R      F   T   
Sbjct: 393 FLKRNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNATQGT 452

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R A   G++   +   ++  +
Sbjct: 453 LICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGANGKGRSLMFLQPSEVGFL 512

Query: 358 DAIEKLIEKKVDWLNGDLS-----SLNPPLEKIDIAQHNHARKNNPIPQKS 403
             ++   E +V  +  D       ++   LEK+ I Q+ +  K+     +S
Sbjct: 513 KHLK---EARVPVVEFDFPAKRIVNVQSQLEKL-IGQNYYLNKSAKDGYRS 559


>gi|221117076|ref|XP_002155771.1| PREDICTED: vasa-related protein CnVAS2 [Hydra magnipapillata]
          Length = 890

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 129/388 (33%), Positives = 198/388 (51%), Gaps = 20/388 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++  L P  +  +  A Y +PTPIQ   IP +L + DV   A TG+GKTASF+LP++T
Sbjct: 451 SFSEANLHPVCLKNLDLAKYKEPTPIQKYAIPAILAKRDVMACAXTGSGKTASFLLPIIT 510

Query: 62  ILEK--------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
            L              V +P   IL PTREL  Q+     K+  N +L   +L GG+   
Sbjct: 511 NLMNEGLDNIDSNIDGVALPLAAILAPTRELVVQLFTEARKFSYNSSLKPVVLYGGVAVA 570

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q  +L  G  +L+ TPGR+ D   RGK+   N++ L++DEAD+M+DMGF P I++I   
Sbjct: 571 HQADRLRMGCHLLVATPGRLEDFIKRGKVNFQNLKYLILDEADKMIDMGFGPQIEHIIEF 630

Query: 174 VPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                + +    +FSAT  D++Q ++  FL +   + V     T   +    +       
Sbjct: 631 SGMPPKGIRNTLMFSATFPDQIQHLAAQFLNDYLFLTVGRVGGTCTDVTQSVIQVSGTKK 690

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           +      + L         ++F  +K++   L + L ++ F   +++ +  Q  R   L 
Sbjct: 691 R---ETLENLLQTSGSDRTLVFVEKKRDADFLANFLSQKNFPATSLNADRTQEERESALK 747

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G   ++VA+ +AARGLDI DV HV N+D+P  A  Y+HRIGRTGR G  GKA +  
Sbjct: 748 DFRNGIAPILVATAVAARGLDINDVKHVINYDLPKDANEYVHRIGRTGRIGNKGKATSFF 807

Query: 350 A-KEDIKHIDAIEKLI---EKKV-DWLN 372
               D     ++ KL+   E+ V DWL 
Sbjct: 808 DLDRDGSLARSLVKLLSDAEQDVPDWLE 835


>gi|218709165|ref|YP_002416786.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218322184|emb|CAV18298.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 418

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 136/418 (32%), Positives = 210/418 (50%), Gaps = 9/418 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L+PK V A+    + KPT IQ   IP ++   DV  +AQTG+GKT +F LP+L
Sbjct: 7   MSFDSLALNPKTVSAIPSQ-FNKPTEIQQAVIPTIIAGKDVLALAQTGSGKTLAFGLPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++     I+ PTRELA+QVA   E      ++    L GG+  E Q ++L 
Sbjct: 66  NSIKHDVNELQAI---IIVPTRELASQVAKALEPIATTLDIKTVTLTGGVDIEIQQQQLL 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+       KL +   + +++DEADR+LDMGF P +Q I S +P   QT
Sbjct: 123 EKPQLVIATPGRLHAVIQENKLELTQCKSIILDEADRLLDMGFWPDVQTIISALPKKHQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL   +E  L NP ++  +  +S    IE            +  +      
Sbjct: 183 LLFSATLPKELISQTEALLVNPVKVTTHQENSVVAAIEETLYLVNKGSKAQALIALLNQH 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       ++F   K N   L   L K   SV A+HGN +Q  R + L +FK G  ++++
Sbjct: 243 AWS---QVLVFIGAKDNADALTKRLSKAKISVNALHGNKNQEEREQALESFKNGKTRVLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+ I  +  V NFD+P+ +  Y+HR+GRT RAG  G A +LV+  +  +++AI
Sbjct: 300 ATDVMARGIHIDQLPVVINFDLPSHSATYVHRVGRTARAGSTGSAISLVSHSETDYLNAI 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
             L  K +  +   L       +    A        + +  + T   +  K + S+ S
Sbjct: 360 RTLTNKPL--MLQALEGFPVTDKPASEATARKRPPKDKMANRRTAKKKSVKQFKSKPS 415


>gi|322709683|gb|EFZ01259.1| ATP-dependent RNA helicase [Metarhizium anisopliae ARSEF 23]
          Length = 434

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 149/375 (39%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q   IP  L   D+   A++G GKTA FVL  L  
Sbjct: 52  FRDFLLKPELLRAIGDCGFEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQ 111

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
           +E     V +                 + F KY       +           E    K  
Sbjct: 112 VEPVNGEVSVVVMCHTRELAYQIRDEYNRFSKYMPDIKTGVFFGGTPIKTDMETLKNKDT 171

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++           ++   L +    ++ +    +        +Q++    P  +Q 
Sbjct: 172 CPHIIVGTPGRLKALVRDKALRLGSVRIFVLDECDKMLDQPDMRTDVQDVFRATPTQKQV 231

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT+ +E++ +   F+QNP    V+  +         +     +  K   L +    
Sbjct: 232 MMFSATLANEIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIKLEEKEKNRKLNEL--L 289

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      IIF         L   L +  F   A+H  + Q  R+K    FKE   ++ V
Sbjct: 290 DELQFNQVIIFVKSTIRATELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFKKRICV 349

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+  RG+DI  +    N+D+P  A +Y+HR+GR GR G  G A + V+ + D   +  
Sbjct: 350 ATDVFGRGIDIERINLAINYDLPADASSYLHRVGRAGRFGTKGLAISFVSSDQDQDVLKE 409

Query: 360 IEKLIEKKVDWLNGD 374
           IEK  E  +     +
Sbjct: 410 IEKRFEVALPEFPKE 424


>gi|307189121|gb|EFN73577.1| Probable ATP-dependent RNA helicase DDX10 [Camponotus floridanus]
          Length = 791

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 121/461 (26%), Positives = 218/461 (47%), Gaps = 23/461 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F+DL LS   +  +++  Y+  T IQ ++I L LQ +D+ G A+TG+GKT +F++P + 
Sbjct: 39  KFSDLPLSRITLKGLVENNYIDMTDIQRQSIGLALQGNDILGAAKTGSGKTLAFLIPVLE 98

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  K   R+     LI+ PTRELA Q+ +   K G+ ++++  L+IGG   + + K+++
Sbjct: 99  ILYCKQWTRLDGVGALIITPTRELAYQIYETLRKVGRYHDVSAGLIIGGKDLKFERKRMD 158

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V+      +            N++ILV+DEADR LDMGF   +  I + +P  RQT
Sbjct: 159 QCNVVICTPGRLLQHMDENPLFDCVNMQILVLDEADRCLDMGFEKTMNCIIANLPPKRQT 218

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT T  ++ ++   L++P  + V+  S+                      +     
Sbjct: 219 LLFSATQTKSVKDLARLSLKDPLYVSVHEYSTHTTPENLQQNYIVCSLED-KMAMLWSFI 277

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC--AIHGNIDQRSRMKILSNFKEGTIQL 298
                +  I+F +  K V  +     +    V   A++G + Q  RM I  +F +    +
Sbjct: 278 RNHLKQKIIVFFSSCKQVKYIYEVFCRLRPGVSLLALYGTLHQMKRMSIYESFCKKQYAV 337

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+AARGLD P V  V   D P     YIHR GRT R    G++  ++   +   I+
Sbjct: 338 LFATDIAARGLDFPAVNWVLQMDCPEDVNAYIHRAGRTARFQSGGESLLVLLPSEEGIIE 397

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKID-IAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            +++  +  ++ +  + S L  P  K++ +   N A K                  ++Q+
Sbjct: 398 KLKQ-CKIPINMIRINPSKLQSPHRKLEALLAQNIALKE-----------------TAQR 439

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
           + I   +S  + K ++    +  D+  +  ++   + P+ R
Sbjct: 440 AFIAYIKSVFLMKDKEIFNVHALDTDAYAKSLGLAIPPRIR 480


>gi|162148769|ref|YP_001603230.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787346|emb|CAP56941.1| putative ATP-dependent RNA helicase rhlE [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 390

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 138/378 (36%), Positives = 202/378 (53%), Gaps = 9/378 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL P++V  V  AGY  P+PIQ   IP +    DV  +A+TGTGKTA+F LP++ 
Sbjct: 15  TFDGLGLDPRIVANVARAGYATPSPIQALAIPPIRDGRDVEALARTGTGKTAAFALPVIH 74

Query: 62  ILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            L  G             R LIL PTRELA+Q A       +   LTVAL IGG P + Q
Sbjct: 75  RLLTGAGDAAPSGPPGHVRALILSPTRELASQTAGTVRTCIRGCGLTVALAIGGAPKDRQ 134

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + L  G D+L+ TPGR+LDH     + +++   LV+DEADRMLD+GF+  ++ I + +P
Sbjct: 135 ARALLDGVDILVATPGRLLDHLADATITLDHTTCLVLDEADRMLDLGFVEDVRAIAARLP 194

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              QTLLFSATM+  +  +    L  P +I     ++    I    + T A      A  
Sbjct: 195 VRHQTLLFSATMSPAISALGRQLLHKPLQIAPPEQAAPPPRIRQQVIFTPAARK---AAS 251

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              +  ++     ++F   K+    L  +L   G +  A+HG+  Q  R + L +F+ G 
Sbjct: 252 LLAVLRREAGGRTMVFTRTKQAADALARTLNTGGVTAAALHGDHGQVRRDRTLDDFRRGR 311

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+ ARG+D+  V  V NFD+P + E YIHRIGRT RAGR G A +L    +  
Sbjct: 312 LLVLVATDVMARGIDVEGVALVVNFDIPEQPETYIHRIGRTARAGRRGTALSLCDPAERL 371

Query: 356 HIDAIEKLIEKKVDWLNG 373
            +  IE+    ++  ++ 
Sbjct: 372 KLRDIERQSGARITVIDP 389


>gi|66532824|ref|XP_624894.1| PREDICTED: ATP-dependent RNA helicase WM6-like [Apis mellifera]
          Length = 424

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 91/375 (24%), Positives = 167/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 44  FRDFLLKPEILRAIIDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 103

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY  +  + V      I  + +  K    
Sbjct: 104 LELTENQVYVLVMCHTRELAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEVLKNTCP 163

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L +    ++ +    +  +     +Q I    P  +Q ++
Sbjct: 164 HIVVGTPGRILALVRNKKLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHGKQVMM 223

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  + V+  +               +  K   L +      
Sbjct: 224 FSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFEL--LDV 281

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F    IH  + Q  R+     FK+   +++VA+
Sbjct: 282 LEFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVAT 341

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A TLV+ E D K ++ ++
Sbjct: 342 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITLVSDESDAKILNDVQ 401

Query: 362 KLIEKKVDWLNGDLS 376
           +  +  +  L  ++ 
Sbjct: 402 ERFDVNITELPDEID 416


>gi|291447570|ref|ZP_06586960.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|291350517|gb|EFE77421.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
          Length = 458

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 141/402 (35%), Positives = 217/402 (53%), Gaps = 10/402 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+ P+   A+   G   P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L 
Sbjct: 3   TFRDLGIFPETAEALEAVGITSPFPIQELTLPVALSGSDVIGQAKTGTGKTLGFGLPLLE 62

Query: 62  ILE----------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
            +           K       P+ L++ PTREL  QV ++    GK  N+ V  + GG  
Sbjct: 63  RVTVPADVEAGRAKPEQLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRA 122

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q + L++G DV++ TPGR+LD   + KL +++I  LV+DEAD MLD+GF+P ++ I 
Sbjct: 123 YEPQVEALKKGVDVIVGTPGRLLDLAGQRKLDLSHIRGLVLDEADEMLDLGFLPDVERII 182

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +++P  RQT+LFSATM   +  ++  ++  P  I   +P     T+++     Y  ++  
Sbjct: 183 TMLPAKRQTMLFSATMPGAVISLARRYMSQPTHINATSPDDEGTTVKNTVQHVYRAHNMD 242

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              +   +   D     +IFC  K+   ++   LEK+GF+  A+HG++ Q +R + L  F
Sbjct: 243 KPEMLARILQADGRGLAMIFCRTKRTAADIAEQLEKRGFASGAVHGDLGQGAREQALRAF 302

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAG  G A TLV  
Sbjct: 303 RNGKVDVLVCTDVAARGIDVEGVTHVVNYQSPEDEKTYLHRIGRTGRAGAKGVAITLVDW 362

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           +DI     I K ++ K        S+     E++ I      
Sbjct: 363 DDIPRWQLINKALDLKFPDPPETYSTSPHLFEELGIPAGTKG 404


>gi|70733057|ref|YP_262830.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens Pf-5]
 gi|68347356|gb|AAY94962.1| ATP-independent RNA helicase DbpA [Pseudomonas fluorescens Pf-5]
          Length = 461

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 134/405 (33%), Positives = 211/405 (52%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LSP ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 8   FNTLPLSPAMLANLDSLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  +  +    L +  G+ F  Q   LE 
Sbjct: 68  I---NPRYFGCQALVICPTRELADQVAKEVRRLARAEDNIKVLTLCGGVSFGPQIASLEH 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  LV+DEADRMLDMGF   I++I    P  RQTL
Sbjct: 125 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLVLDEADRMLDMGFYDAIEDIIEKTPSRRQTL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++  F     R      +             Y    ++       +  
Sbjct: 185 LFSATYPVGIKQLASKF----MRDPQTVKAEAFHDDTQIEQRFYEISPEERMSAVTKVLH 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FC  K+ V      L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 241 HFRPASCVAFCFTKQQVQETVDHLTAKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  +     AIE
Sbjct: 301 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSEAHRAQAIE 360

Query: 362 KLIEKKVDWLNGDL------SSLNPPLEKIDIAQHNHARKNNPIP 400
           +L +  ++W   D       + L PP+  + IA     RK+   P
Sbjct: 361 QLQKAPLNWDQVDNLKSQGGAPLQPPMSTLCIA---GGRKDKVRP 402


>gi|332525252|ref|ZP_08401425.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332108534|gb|EGJ09758.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 520

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 147/395 (37%), Positives = 226/395 (57%), Gaps = 14/395 (3%)

Query: 9   SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL----- 63
              +  AV DAGY  PT +Q + IP  L   D+   + TG+GKTASFVLP LT +     
Sbjct: 2   PEALARAVADAGYTTPTEVQSRAIPPALGGADLMVSSSTGSGKTASFVLPALTRILAARG 61

Query: 64  ---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKL 119
               + +  V  PR L+L PTRELA QVA     YG++     VA ++GG+P+ AQ K L
Sbjct: 62  DGKRREKGVVSGPRILVLAPTRELAMQVAKATNDYGRHVQGLRVATIVGGVPYGAQLKAL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               DVLI TPGR++DH   G+ ++ N+E+LV+DEADRMLDMGFI  I +I S  P  RQ
Sbjct: 122 RGPLDVLIATPGRLMDHMASGRAVLANVEMLVLDEADRMLDMGFIDDIHHIASATPAARQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+++SAT    + +++E  L+ P+RIE+ + +     IE           K        +
Sbjct: 182 TVMYSATFAGHVGRLAEELLREPQRIEIASHTDVHADIEQRLHWADNFAHKNAL--LDHI 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++ +++  ++F + +++   L   L + G  V ++HG   Q  R ++L   +   ++++
Sbjct: 240 LTERSVEQAVVFTSTQRDADWLADRLAEMGHHVASLHGGHPQGRRNRVLQGLRSRDLKIL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+P + HV NF +P +AE+Y+HRIGRTGRAGR G A TL  + D   I  
Sbjct: 300 VATDVAARGIDVPTISHVINFGLPMKAEDYVHRIGRTGRAGRSGLAVTLAERGDAGMIHR 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPL-EKIDIAQHNHA 393
           I++   +++   +  +  L P + E +  A+   A
Sbjct: 360 IQRFTTQRIP--SATIEGLEPKMPEPMREARPPRA 392


>gi|325928804|ref|ZP_08189971.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
 gi|325540777|gb|EGD12352.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
          Length = 571

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 125/422 (29%), Positives = 216/422 (51%), Gaps = 6/422 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L P ++  +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++
Sbjct: 9   VTFSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVM 68

Query: 61  TI----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                       +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q 
Sbjct: 69  NRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQR 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIE-ILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L++G DV+I TPGR++D+  + K++  +   I V+DEADRM D+GFI  I+ +   +P
Sbjct: 129 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                     + T   + +   +    +  ++   + +  T        Y    ++   L
Sbjct: 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESI-TAARVRQRIYFPSDEEKQTL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L S+      ++F N K  V  +  +LE+ G+ V  + G++ Q+ R  +L+ F++G 
Sbjct: 248 LLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +  IE  IE+K+         L P      +        ++      T F   ++  ++
Sbjct: 368 SLPDIEAYIEQKIPVEPVTSELLTPLPRAPRVPVEGEEADDDAGDSVGTIFREAREQRAA 427

Query: 416 QK 417
           ++
Sbjct: 428 EE 429


>gi|78049510|ref|YP_365685.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|123584009|sp|Q3BNH8|RHLB_XANC5 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|78037940|emb|CAJ25685.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 573

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 125/422 (29%), Positives = 216/422 (51%), Gaps = 6/422 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L P ++  +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++
Sbjct: 9   VTFSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVM 68

Query: 61  TI----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                       +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q 
Sbjct: 69  NRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQR 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIE-ILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L++G DV+I TPGR++D+  + K++  +   I V+DEADRM D+GFI  I+ +   +P
Sbjct: 129 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                     + T   + +   +    +  ++   + +  T        Y    ++   L
Sbjct: 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESI-TAARVRQRIYFPSDEEKQTL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L S+      ++F N K  V  +  +LE+ G+ V  + G++ Q+ R  +L+ F++G 
Sbjct: 248 LLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +  IE  IE+K+         L P      +        ++      T F   ++  ++
Sbjct: 368 SLPDIEAYIEQKIPVEPVTSELLTPLPRAPRVPVEGEEADDDAGDSVGTIFREAREQRAA 427

Query: 416 QK 417
           ++
Sbjct: 428 EE 429


>gi|21244553|ref|NP_644135.1| ATP-dependent RNA helicase RhlB [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|32363346|sp|Q8PFZ3|RHLB_XANAC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|21110227|gb|AAM38671.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 571

 Score =  143 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 125/422 (29%), Positives = 216/422 (51%), Gaps = 6/422 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L P ++  +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++
Sbjct: 9   VTFSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVM 68

Query: 61  TI----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                       +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q 
Sbjct: 69  NRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQR 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIE-ILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L++G DV+I TPGR++D+  + K++  +   I V+DEADRM D+GFI  I+ +   +P
Sbjct: 129 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                     + T   + +   +    +  ++   + +  T        Y    ++   L
Sbjct: 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESI-TAARVRQRIYFPSDEEKQTL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L S+      ++F N K  V  +  +LE+ G+ V  + G++ Q+ R  +L+ F++G 
Sbjct: 248 LLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +  IE  IE+K+         L P      +        ++      T F   ++  ++
Sbjct: 368 SLPDIEAYIEQKIPVEPVTSELLTPLPRAPRVPVEGEEADDDAGDSVGTIFREAREQRAA 427

Query: 416 QK 417
           ++
Sbjct: 428 EE 429


>gi|333000436|gb|EGK20018.1| ATP-dependent RNA helicase srmB [Shigella flexneri VA-6]
          Length = 444

 Score =  143 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 145/434 (33%), Positives = 224/434 (51%), Gaps = 9/434 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP + 
Sbjct: 5   TFSELELDKSLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT   D +Q  +E  L++P  +  N  +   + I   +        K        L
Sbjct: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTAL--LVHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      I+F  +++ V  L + L + G + C + G + Q  R + +    EG + ++
Sbjct: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIPDV HVFNFD+P   + Y+HRIGRT RAGR G A +LV   D   +  
Sbjct: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           + + IE+ +     D   L P        Q     K     +      + K+    +K H
Sbjct: 363 VGRYIEEPIKARVID--ELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH 420

Query: 420 IPLKESEKISKLQQ 433
              ++++ I K ++
Sbjct: 421 ---RDTKNIGKRRK 431


>gi|212636402|ref|YP_002312927.1| DEAD box helicase [Shewanella piezotolerans WP3]
 gi|212557886|gb|ACJ30340.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 446

 Score =  143 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 143/449 (31%), Positives = 225/449 (50%), Gaps = 21/449 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F    L P ++ AV   GY   T +Q   +P+ +   D+   AQTGTGKTA+F LP+L
Sbjct: 1   MNFDAFDLHPHILDAVSKRGYKALTEVQCHVLPVAMLGQDIMACAQTGTGKTAAFALPLL 60

Query: 61  TI-------------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                           +         + L+L PTRELA QVADN + Y +      A + 
Sbjct: 61  NTLVGQALQQSKVAEEDTFNQYRSELKVLVLTPTRELAIQVADNIQAYAQCLPFKTAAVY 120

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q K ++ G D+L+ TPGR+ D   +  L +  +  LV+DEADRMLDMGF+  I
Sbjct: 121 GGANMNPQRKAVQAGVDILVATPGRLFDLIGQFGLDLGCVTHLVVDEADRMLDMGFVRDI 180

Query: 168 QNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           + +  LV    QTL FSAT ++E++ +++  L  P+ I+V T ++ ++         Y  
Sbjct: 181 ERVKRLVAVEHQTLFFSATYSEEVKALAQKMLVAPEWIDVTTAATASKI----AQEVYLV 236

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             ++ A L   L  ++  +  ++F + K++  +L   L+  G      HG+  Q SR + 
Sbjct: 237 DKRRKAELLSELVGRNNWQQVLVFVSSKESAEHLHSELKLDGVKSAVFHGDKTQGSRNRA 296

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L  FK G +++MVA+D+AARGLDI  +  V N ++P  AE+Y+HR+GRTGRAG  G+A +
Sbjct: 297 LEEFKNGKLRVMVATDVAARGLDIEALPLVINLELPFAAEDYVHRVGRTGRAGLEGRAIS 356

Query: 348 LVAKEDIKHIDAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            V+ +D   +  IE +IE  +    L G       P    D+       K     ++   
Sbjct: 357 FVSPQDKTMLSEIETIIEMTLPCITLPGYEQGAPLPARYRDVTTKPV--KERSHNKRKYQ 414

Query: 406 FDRRKKNYSSQKSHIPLKESEKISKLQQD 434
             RR ++ S Q +       +      ++
Sbjct: 415 EKRRSESKSGQANATKSSGDKNRYGRSKN 443


>gi|326929996|ref|XP_003211139.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
           DDX54-like [Meleagris gallopavo]
          Length = 831

 Score =  143 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 129/366 (35%), Positives = 199/366 (54%), Gaps = 3/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   V+  GY  PTPIQ KTIP++L+  DV  +A+TG+GKTA F+LPM   
Sbjct: 62  FQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVILRGRDVVAMARTGSGKTACFLLPMFER 121

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+         R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 122 LKAPSPSGA--RALILSPTRELALQTLKFTKELGKFTGLKTALVLGGDKMEDQFAALHEN 179

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L ++++E +V DEADR+ +MGF   +Q I + +P + QT+L
Sbjct: 180 PDIIIATPGRLVHVAVEMNLKLHSMEYVVFDEADRLFEMGFAEQLQEILARLPGSHQTVL 239

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  S  +E +            K   LL  L    
Sbjct: 240 FSATLPKLLVEFARAGLTEPMLIRLDVESKLSEQL-KLAFFHVRGDDKPAVLLHLLRSVV 298

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K +   L   L  QG     I+ ++DQ +R   ++ F  G  Q+++ +
Sbjct: 299 KPQDQTVVFVATKHHTEYLKELLTSQGICCTHIYSSLDQTARKINIAKFAHGKCQVLLVT 358

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIP + +V N+  P +++ ++HR+GR  RAGR G A++LVA +++ +I  +  
Sbjct: 359 DVAARGLDIPMLDNVINYSFPAKSKLFLHRVGRVARAGRSGTAYSLVAPDEMPYIFDLHL 418

Query: 363 LIEKKV 368
            + + +
Sbjct: 419 FLGRPL 424


>gi|326433402|gb|EGD78972.1| hypothetical protein PTSG_01945 [Salpingoeca sp. ATCC 50818]
          Length = 845

 Score =  143 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 116/445 (26%), Positives = 205/445 (46%), Gaps = 12/445 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F +  +S +    + DAG++KPT IQ  T+   L   DV G A+TG+GKT +F++P +  
Sbjct: 57  FTEFPISNRTKKGLADAGFIKPTRIQKATLKHALAGRDVLGAAKTGSGKTLAFLIPVLEK 116

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  +  +R      +++ PTRELA Q  +   +    + ++ AL IGG   + +      
Sbjct: 117 LNRERFSRDLGIGAVVVSPTRELAQQTYNTLVQVATGHEMSCALFIGGNNVKIEKTMAAT 176

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +           +N+++LV+DEADR+LD GF   +  I S +P  RQTL
Sbjct: 177 RNIIICTPGRLVQHMDETPNFGFDNLQVLVLDEADRLLDSGFKEEVDRIVSEMPPHRQTL 236

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T E+ +++   L NP  I V+   +               + K   L   +   
Sbjct: 237 LFSATQTAEVDELARLSLHNPVFINVHKDQAATPARLKQCYVEVPLHEKINLLYSFIESH 296

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +       + C ++ N++       K G S+  + G     +R + L  F +    +++ 
Sbjct: 297 KKHKTMVFLACRKQVNLLYKIFCRRKPGVSIFELVGRRSLHTRQETLRKFSKAKAAVLLT 356

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP+V  V   D P   + YIHR+GRT R G++G A   +   ++  +  +E
Sbjct: 357 TDVAARGLDIPNVNWVLQVDCPESVDTYIHRVGRTARFGKNGNAMLFLLPSELNMVKQLE 416

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
               +KV     ++S+       ++  +  +A   + +      F R  ++  +Q     
Sbjct: 417 ---GRKVPIARKEISA-RAVRSIVETMRREYATDPDMLMLGKQYFVRYVRSVYNQ----- 467

Query: 422 LKESEKISKLQQDIQENDADSLGFR 446
              ++ + K+     E+ A SLG  
Sbjct: 468 --ANKDVFKVHALPLESFAMSLGLP 490


>gi|289617759|emb|CBI61482.1| unnamed protein product [Sordaria macrospora]
          Length = 648

 Score =  143 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 133/396 (33%), Positives = 208/396 (52%), Gaps = 21/396 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L
Sbjct: 219 LTFTNPPLDNHLISNIALARYNVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPIL 278

Query: 61  TILEK--------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
           +                  GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 279 SQSFHTGPSPIPASAAGAYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVV 338

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 339 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQ 398

Query: 167 IQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 399 IRRIVEGEDMPKVDQRQTLMFSATFPRDIQILARDFLKDYIFLSVGRVGSTSENITQKVE 458

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +        +         +IF   K+   +L   L  Q F   +IHG+  QR
Sbjct: 459 YVEDVDKRSV---LLDILHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQR 515

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 516 ERERALEMFRNGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 575

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A     + +   +  + +L+++    +   L ++
Sbjct: 576 GIATAFFNRGNRGVVRELLELLKEANQEVPAFLETI 611


>gi|121706879|ref|XP_001271659.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus clavatus
           NRRL 1]
 gi|134034088|sp|A1CH78|DED1_ASPCL RecName: Full=ATP-dependent RNA helicase ded1
 gi|119399807|gb|EAW10233.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus clavatus
           NRRL 1]
          Length = 681

 Score =  143 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 135/396 (34%), Positives = 205/396 (51%), Gaps = 22/396 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+   
Sbjct: 191 FTNPPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 250

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                           +  GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 251 AFQKGPSAVPAQASGQMSYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVV 310

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI  LV+DEADRMLDMGF P 
Sbjct: 311 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNINYLVLDEADRMLDMGFEPQ 370

Query: 167 IQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 371 IRRIVEGEDMPSVNERQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVE 430

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +       +L +  T    +IF   K+    L   L  Q F   AIHG+  QR
Sbjct: 431 YVEDVDKRSVL--LDILHTHGTSGLTLIFVETKRMADALSDFLINQRFPATAIHGDRTQR 488

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+     ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 489 ERERALEMFRSARCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 548

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A     + +   +  +  L+++    +   L S+
Sbjct: 549 GIATAFFNRGNRGVVRELIDLLKEAHQEVPSFLESI 584


>gi|290996400|ref|XP_002680770.1| DEAD/DEAH box helicase [Naegleria gruberi]
 gi|284094392|gb|EFC48026.1| DEAD/DEAH box helicase [Naegleria gruberi]
          Length = 614

 Score =  143 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 120/445 (26%), Positives = 201/445 (45%), Gaps = 20/445 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR------------HDVCGIAQTG 48
           + FA LGLS  +   + + GY  PT IQ + IP+ ++             +D+ GI++TG
Sbjct: 143 ISFASLGLSQVLCDTLKEIGYKHPTKIQREVIPVAIKEAFHDDETGFTKYNDIIGISETG 202

Query: 49  TGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
           +GKTAS+VLP+L  L + +        LIL PTRELA Q+  +    G    +T   L G
Sbjct: 203 SGKTASYVLPVLERLLQLKGDPSPCSALILAPTRELAVQIQGHVNALGSKIGITSTTLTG 262

Query: 109 GIPFEAQNKKLERGADVLICTPGRILD---HFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           G      + + ++    ++      +     F +    +N+   LV+DEAD+ML   F  
Sbjct: 263 GTSIANDSLRFKKNRYHVVVGTPGRVCDLLEFGKSNFNLNHTRFLVLDEADKMLGSEFDK 322

Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           ++  I+  +   + T+   +              Q    +++   SS   T++       
Sbjct: 323 WLTTISEKLRRKQCTVYLFSATMTTKIDKLLKLHQMTNPVKIQVTSSKYHTVDTLTQQYL 382

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
               K        L +++  K  ++F  Q    + L   L    F    + G++D+  R 
Sbjct: 383 LLPEKYKEQYLVYLLNENPGKRILVFAGQNSTCILLSILLRSLKFPTVPLSGHMDETHRQ 442

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L  F  G   ++VA+D+AARGLDIP V  V NFD+P  ++ Y+HR+GRT R G  G A
Sbjct: 443 HCLRKFVSGDRPILVATDIAARGLDIPLVDIVINFDIPVHSKEYVHRVGRTARIGNQGLA 502

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ---- 401
            T V + D+++   IE LIEKK+D  N +  +       +  A     +K + + +    
Sbjct: 503 VTFVTQYDLQYFQKIEALIEKKMDVCNVNKENAMLLTNTVSQALKLAKKKMSDMEKGDMA 562

Query: 402 -KSTGFDRRKKNYSSQKSHIPLKES 425
            KS  F   ++  ++    +  K +
Sbjct: 563 VKSDEFTEEEEVLNNAIRSLSAKRA 587


>gi|52081051|ref|YP_079842.1| DEAD/DEAH box ATP dependent helicase YqfR [Bacillus licheniformis
           ATCC 14580]
 gi|52786429|ref|YP_092258.1| YqfR [Bacillus licheniformis ATCC 14580]
 gi|52004262|gb|AAU24204.1| DEAD/DEAH box ATP dependent helicase YqfR [Bacillus licheniformis
           ATCC 14580]
 gi|52348931|gb|AAU41565.1| YqfR [Bacillus licheniformis ATCC 14580]
          Length = 439

 Score =  143 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 131/444 (29%), Positives = 214/444 (48%), Gaps = 20/444 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L P ++ AV   G+ +PT IQ + IP  L+     G +QTGTGKT +++LP+L+
Sbjct: 5   KFEMYDLKPFIIEAVHHLGFYEPTDIQKRLIPAALKGESAIGQSQTGTGKTHAYLLPLLS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVAD----NFEKYGKNYNLTVALLIGGIPFEAQNK 117
            ++         + +I  PTRELA Q+        +  G +  +     IGG   +    
Sbjct: 65  RIDP---EKEFVQVVITAPTRELANQIHQEVLKITKFLGPDEAIRSKCFIGGTDKQKSID 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+    +++ TPGRI D      L ++     VIDEAD MLDMGF+  +  I S +P  
Sbjct: 122 KLKTQPHLVVGTPGRIADLIREQALDVHKAGSFVIDEADLMLDMGFLEDVDFIGSHMPEG 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+ ++L+   + ++ NP+   V     TAE IEH  + +  +   +      
Sbjct: 182 LQMLVFSATIPEKLKPFLKKYMANPRYAHVEPKHITAEKIEHVLIPSRHRDKNEL---LL 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            + +       I+F N K     +   L  +G  V  +HG +  R R K++    +    
Sbjct: 239 EVMTHLNPYLAIVFANTKTTADEIAAYLTDKGMKVGLLHGGLTPRERKKVMKQIGDLEFT 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++A+DLAARG+DI  V HV N+++P+  + Y+HR+GRT RAG  G A T     D    
Sbjct: 299 YIIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGTSGTAVTFYDTSDE--- 355

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP-----IPQKSTGFDRRKKN 412
           DA+ KL +  + + N  +       +KID  +    RK  P     + ++     R+ K 
Sbjct: 356 DALVKLEQMGIVFENMRIEKGE--WKKIDDRKRRQNRKRTPDETDEVAKRLVKKPRKVKP 413

Query: 413 YSSQKSHIPLKESEKISKLQQDIQ 436
              +K    +++ ++  K +Q  +
Sbjct: 414 GYKKKMQTEIQKIKRQQKRKQFRK 437


>gi|21233204|ref|NP_639121.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66770146|ref|YP_244908.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188993353|ref|YP_001905363.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           campestris str. B100]
 gi|32363344|sp|Q8P4D4|RHLB_XANCP RecName: Full=ATP-dependent RNA helicase rhlB
 gi|81303902|sp|Q4UPY5|RHLB_XANC8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739237|sp|B0RWT6|RHLB_XANCB RecName: Full=ATP-dependent RNA helicase rhlB
 gi|21115552|gb|AAM43476.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66575478|gb|AAY50888.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167735113|emb|CAP53325.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris]
          Length = 573

 Score =  143 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 125/385 (32%), Positives = 205/385 (53%), Gaps = 6/385 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L P +V  +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++
Sbjct: 9   LTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVM 68

Query: 61  T----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                       +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q 
Sbjct: 69  NRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQR 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIE-ILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L++G DV+I TPGR++D+  + K++  +   I V+DEADRM D+GFI  I+ +   +P
Sbjct: 129 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                     + T   + +   +    +  ++   + T  T        Y    ++   L
Sbjct: 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETI-TAARVRQRIYFPSDEEKQTL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L S+      ++F N K  V  +  +LE+ G+ V  + G++ Q+ R  +L+ F++G 
Sbjct: 248 LLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNP 380
            +  IE  IE+K+         L P
Sbjct: 368 SLPDIEAYIEQKIPVEPVTTELLTP 392


>gi|193632062|ref|XP_001950933.1| PREDICTED: probable ATP-dependent RNA helicase DDX52-like
           [Acyrthosiphon pisum]
          Length = 528

 Score =  143 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 118/429 (27%), Positives = 188/429 (43%), Gaps = 10/429 (2%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
               LSP ++  + ++GY  PTPIQ + IP++LQ+  +   A TG+GKTA+F++P++  L
Sbjct: 57  EAYSLSPVLMENLKNSGYTVPTPIQTQAIPVMLQKRQIFACAPTGSGKTAAFLVPIIHHL 116

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKLERG 122
            K   +      LI+ PTRELA Q      +  +   L            E  N KL + 
Sbjct: 117 NKPLNKGFR--ALIVSPTRELAKQTLRECTRLCEGIGLRAHTFTKINKDKEKFNPKLAQK 174

Query: 123 ADVLICTPGRILDHFNRGK-----LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            D+LI TP R++    +         +  + I   D+       GF   +  I       
Sbjct: 175 FDILIATPNRLVFLLQQEPPAVELNNIEWLIIDESDKLFETGVRGFRDQLAIIYKACGPN 234

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            +  +FSAT T E+ K S+  L     + V   ++T   +E   V    +  K  A+  +
Sbjct: 235 AKRAMFSATYTVEVAKWSKKNLDGLIAVTVGNRNTTTTMVEQELVFVGNEEGKLIAM--R 292

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +      +IF   K+    L   L   G +V AIH +  Q+ R   +  F+EG I 
Sbjct: 293 DLVKKGLSPPVLIFLQSKERAKELFSELIYDGINVDAIHADRTQQQRDNTVKAFREGKIW 352

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ ++L  RG+D   V  V N+D P+ A +YIHRIGRTGRAGR GKA T    +D   +
Sbjct: 353 VLICTELMGRGIDFKGVNLVVNYDFPSSAISYIHRIGRTGRAGRSGKAVTFFTNDDKPML 412

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            +I  ++      +   +  +    +         +   N I  K   + +   +     
Sbjct: 413 RSIATVMRDSGCPVPDYMLEMKRLHKNTRRKLEKQSIDRNEIRAKPHRYHKPNADIKDPA 472

Query: 418 SHIPLKESE 426
           S    KES 
Sbjct: 473 SSKSKKESN 481


>gi|62858405|ref|NP_001016000.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A [Xenopus (Silurana)
           tropicalis]
 gi|89271292|emb|CAJ82673.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Xenopus (Silurana)
           tropicalis]
 gi|89271293|emb|CAJ82681.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Xenopus (Silurana)
           tropicalis]
 gi|89271296|emb|CAJ82702.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Xenopus (Silurana)
           tropicalis]
 gi|187469409|gb|AAI67122.1| hypothetical protein LOC548754 [Xenopus (Silurana) tropicalis]
 gi|213624204|gb|AAI70784.1| hypothetical protein LOC548754 [Xenopus (Silurana) tropicalis]
 gi|213627133|gb|AAI70782.1| hypothetical protein LOC548754 [Xenopus (Silurana) tropicalis]
          Length = 427

 Score =  143 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 92/375 (24%), Positives = 164/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ +++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRSIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            E    +V +             ++  + F KY     + V      I  +    +    
Sbjct: 106 TEAVEGQVTVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGLSIKKDEDTIRKSCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L N    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 166 HIVVGTPGRILALVRSKILNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH N+ Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCMALAQLLTEQNFPAIAIHRNMSQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ +ED K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEEDAKILNDVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRFEVNVGELPDEID 418


>gi|324510197|gb|ADY44267.1| Spliceosome RNA helicase BAT1 [Ascaris suum]
          Length = 429

 Score =  143 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 92/375 (24%), Positives = 160/375 (42%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 47  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDIVCQAKSGMGKTAVFVLATLQQ 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE     V +             ++  + F KY     + V      I  + +  K    
Sbjct: 107 LEPVDGEVSVLVMCHTRELAFQISKEYERFSKYYPGIKIGVFFGGMPIKKDEEVLKNNTP 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +         L      ++ +    + D      +Q I  + P  +Q ++
Sbjct: 167 HIVVGTPGRTLQLARQGSLKLNKIKYFVLDECDKMIGDNDMRRDVQEIVKMTPQEKQVMM 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +L+ V + F+Q+P  + V+  +               +   +       L  Q
Sbjct: 227 FSATLPKDLRAVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEN--EKNKKLLELLDQ 284

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +    L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 285 LEFNQVVIFVRSVQRCGALHRLLSEQNFPSIAIHRGMPQEERLSRYQQFKDFQKRILVAT 344

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 345 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 404

Query: 362 KLIEKKVDWLNGDLS 376
              +  V  L  ++ 
Sbjct: 405 DRFDVNVTELPAEIE 419


>gi|300172973|ref|YP_003772139.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
           [Leuconostoc gasicomitatum LMG 18811]
 gi|299887352|emb|CBL91320.1| ATP-dependent RNA helicase/Autoaggregation-mediating protein
           [Leuconostoc gasicomitatum LMG 18811]
          Length = 454

 Score =  143 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 136/451 (30%), Positives = 227/451 (50%), Gaps = 21/451 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L P+++ A+   G+ +PTP+Q K IP +LQ +DV G +QTG+GKT +F++P+L 
Sbjct: 7   QFGQFNLKPEIIVALTKIGFTQPTPVQAKLIPSILQGNDVVGQSQTGSGKTHTFLIPILN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNKK 118
            L +    V+     I  P+RELAAQ+    + + +++   V +              + 
Sbjct: 67  QLSQNEQYVQAV---ITTPSRELAAQITKAAKDFAESWQQNVTISEFVGGTDKMRQIKQL 123

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +    ++I TPGRI D  + G L ++ +  LV+DEAD  LDMGF+  +  I   +P   
Sbjct: 124 EKGQPQIVIGTPGRIKDLVSTGALKLHAVHTLVVDEADMTLDMGFLSEVDFIAGAMPDKL 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSATM ++L+   + +L NPK   +   +  A+TI        A  SK    +   
Sbjct: 184 QTLVFSATMPEKLKPFLKKYLDNPKFEAIPVSTVIADTI---DNWLLATKSKNRNDVIYQ 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + S       ++F N K+    +  +L  +G  V  IHG+I+ R R +++   +    Q 
Sbjct: 241 VLSIGNPYLALVFANTKERAKEIASNLRGRGLKVAEIHGDIEPRERRRVMKAIQNLEFQY 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N D+P+  E ++HR+GRTGR G  G A TL   ++ + + 
Sbjct: 301 VVATDLAARGIDIEGVSHVINDDIPDELEFFVHRVGRTGRNGLAGLAITLYGPDEEQEVA 360

Query: 359 AIEKL-IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP---------IPQKSTGFDR 408
            +E L I  K   +  D   ++    +    +    +K +P               G+ R
Sbjct: 361 ELEALGINFKAKQIK-DGEIVDVKDRRARKQRVATTKKLDPTMVGMVKKKKKIVKPGYKR 419

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQEND 439
           R K+   +K  +  + S++  +++   +EN 
Sbjct: 420 RIKSAIQRKDQMDRRISKR-EEMRATRKENK 449


>gi|299530392|ref|ZP_07043815.1| hypothetical protein CTS44_06434 [Comamonas testosteroni S44]
 gi|298721617|gb|EFI62551.1| hypothetical protein CTS44_06434 [Comamonas testosteroni S44]
          Length = 430

 Score =  143 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 125/415 (30%), Positives = 195/415 (46%), Gaps = 12/415 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL  +++ A LD G    TPIQ + IP VL   D+   A TG+GKT +++LP+L
Sbjct: 1   MSFAPLGLRAELLDATLDLGLRDATPIQTEAIPAVLAGRDLWACAPTGSGKTMAYLLPLL 60

Query: 61  TIL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                      G  R      L+      L    + N             ++ GG+    
Sbjct: 61  QAWLAQKRGHTGFVRPLATLILVPTRELALQVHESLNDITRQLREQPRSRVVYGGVSINP 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  +L   AD L+ TPGR+LD      + +N ++ LV+DEADR+LD GF   +  + +L+
Sbjct: 121 QMMQLRGSADFLVATPGRLLDLVEHNAVRLNAVQHLVLDEADRLLDQGFAEELNRVLALL 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY------AQY 228
           P  RQTLL SAT    ++ ++   L +P R++V+   +   +     ++         + 
Sbjct: 181 PAKRQTLLLSATFPQNVEALATRLLHDPVRVQVDADQAAEHSTSPENISQRAIAVDGPRR 240

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           ++    L +  ++Q   +  ++F  ++     L   L K G      HG++ Q +R  +L
Sbjct: 241 TQLLRQLVKQGENQPEWERALVFVAKRHTAEMLADKLYKAGIYATTFHGDMSQGARKDVL 300

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             FK    QL++ +DLAARG+DI  +  V N+D+P    +YIHRIGRTGRAG  G A T 
Sbjct: 301 DQFKAKRWQLLITTDLAARGIDIAQLPTVINYDLPRSPADYIHRIGRTGRAGHAGCAITF 360

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           V+  D  H   I K  + ++D            +    +AQ  +       P K 
Sbjct: 361 VSPADTAHWKLICKRNQLEIDLEQIQGFEPTEAVPPPPVAQDGNGGIKGRRPSKK 415


>gi|294141707|ref|YP_003557685.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293328176|dbj|BAJ02907.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 352

 Score =  143 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 118/352 (33%), Positives = 177/352 (50%), Gaps = 1/352 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F D  L  +++  +   G   PT IQ + IP+ L   D+   ++TG+GKT +F+LP M
Sbjct: 1   MQFTDFSLDKRLLDTLDHMGIETPTEIQQQAIPVGLSGKDLMASSKTGSGKTLAFLLPAM 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I+       + PR LIL PTRELA QV         N       ++GG  F  Q K L
Sbjct: 61  QRIISTRALSKKDPRVLILLPTRELANQVYGQLRLLVANTQYKAMKILGGENFNDQAKLL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R    ++ TPGR+ DH  +  L +N +E+L++DEADRMLD+GF   ++ I       R+
Sbjct: 121 ARDPHFVVATPGRLADHLAQHHLHLNGLELLILDEADRMLDLGFAEQLKAINKAADHKRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  Q              V+  +   E ++       A +      L + +
Sbjct: 181 QTLMFSATLDHGQINDIAAELLKSPEHVDVGAGNIENLDITQRIYLADHLDHKEALLESI 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            + +T K  IIF   +++   L   L   G    ++ GN+ Q +R +I+  F  G  +++
Sbjct: 241 LNNETHKQIIIFTATREDTDRLATKLAASGHKTASLSGNLKQSARNQIMDQFSRGLQKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           V +D+A+RGLD+ +V  V NFD+P  AE Y+HRIGRTGRAG  G A +LV  
Sbjct: 301 VTTDIASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGP 352


>gi|167625498|ref|YP_001675792.1| ATP-dependent RNA helicase DbpA [Shewanella halifaxensis HAW-EB4]
 gi|167355520|gb|ABZ78133.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 469

 Score =  143 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 137/367 (37%), Positives = 209/367 (56%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L  +++  +   GY   TPIQ +++P +L   DV G  +TG+GKTA+F L +L  
Sbjct: 14  FSSLNLKVELLDNLKTMGYESMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLNK 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+  R R++   TL+L PTRELA QVA       +  +    L +  G+P   Q   LE 
Sbjct: 74  LDVKRFRIQ---TLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEH 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG+L + N+  LV+DEADRML+MGF   ++ I   +P  RQTL
Sbjct: 131 GAHIIVGTPGRIIDHLDRGRLDLENVHTLVLDEADRMLEMGFQVELEGIMERMPIERQTL 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  +++Q +++       +  +   +S+  T            +       +LL  
Sbjct: 191 LFSATFPEQIQSIADKI---MFKPVMVKVASSHATSTIEQHFYEVGNNNDRMRALKLLLL 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ ++FCN K+   ++   L+  GFSV A+HG+++QR R + L  F   ++ +MVA
Sbjct: 248 QYRPESAVVFCNTKRETKDVAAQLKNDGFSVVALHGDLEQRDRDQTLLQFANKSVSIMVA 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N+ V    E +IHRIGRTGRAG  G A T  + ED   I  +E
Sbjct: 308 TDVAARGLDIDALDAVINYHVAYDTEVHIHRIGRTGRAGSKGSAHTFYSDEDGYKIALLE 367

Query: 362 KLIEKKV 368
             +E+ +
Sbjct: 368 DYLERDI 374


>gi|266619670|ref|ZP_06112605.1| ATP-dependent RNA helicase DbpA [Clostridium hathewayi DSM 13479]
 gi|288868767|gb|EFD01066.1| ATP-dependent RNA helicase DbpA [Clostridium hathewayi DSM 13479]
          Length = 483

 Score =  143 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 124/401 (30%), Positives = 219/401 (54%), Gaps = 12/401 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L+P+++ A+   GY +PT IQ + IP VL+  +V   ++TGTGKTA+F +P+   +    
Sbjct: 15  LAPEIIHALDLLGYQEPTEIQREVIPAVLEGRNVAARSRTGTGKTAAFGIPLCEKIVW-- 72

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
               +P+ L+LEP+RELA QV++     G+   L V  + GG P + Q + +++ + +++
Sbjct: 73  -EENLPQALVLEPSRELAVQVSNELFHIGRRKRLKVPAVFGGFPIDKQMRTIKQKSHIVV 131

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR++D   R  L +  I  LVIDEAD MLDMGF+  ++ I +L+P   + LLFSAT+
Sbjct: 132 GTPGRVMDLIQRECLKLAGIRYLVIDEADLMLDMGFLEEVKQIMALLPKGGRVLLFSATL 191

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
            ++++ + + ++ +   I        AE         Y    ++   L +     +  ++
Sbjct: 192 DEKVRLLVDEYMADAVMIAPEP---DAEEEPAISQVVYRADPEEKYDLLKRTLILENPES 248

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            +IFC  ++ V  L   L++       IHG ++QR R+K +  F+ G  + ++A+D+AAR
Sbjct: 249 CMIFCGTREMVNVLLQKLKRDRIFCGMIHGEMEQRERLKTVDAFRRGGFRFLIATDVAAR 308

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           G+D   +  V N+D P   E Y+HRIGRTGR G +G+A +L+ + + + +  +E  + ++
Sbjct: 309 GIDFDKIDLVVNYDFPGGRETYVHRIGRTGRNGENGRAVSLLCESEERMLHMVEAYMGRE 368

Query: 368 VDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKSTGFD 407
           +      +++   P E+   A     R +  P  QK    +
Sbjct: 369 LS-----VTTCPEPDEEATKAFWTRQRERRAPKAQKGAALN 404


>gi|194017773|ref|ZP_03056383.1| dead/deah box helicase domain protein [Bacillus pumilus ATCC 7061]
 gi|194010673|gb|EDW20245.1| dead/deah box helicase domain protein [Bacillus pumilus ATCC 7061]
          Length = 439

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 131/444 (29%), Positives = 217/444 (48%), Gaps = 15/444 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L   ++ A+ + G+ +PT IQ + IP VL+   V G +QTGTGKT +++LP++ 
Sbjct: 5   KFTTYELKSFIIDAIHELGFYEPTDIQKRIIPAVLKGESVIGQSQTGTGKTHAYLLPLIH 64

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ++  +  V+ +      E   ++  +     +K      +   L IGG   +   +KL+
Sbjct: 65  SIDPSKEHVQVVITAPTRELANQIFKEAQTILKKASPEEEIKAKLYIGGTDKQKSIQKLK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRI D  +   L +     LVIDEAD MLDMGF+  +  I S +P   Q 
Sbjct: 125 NQPHLVVGTPGRIADLIHEQALNVYKATSLVIDEADLMLDMGFLEDVDRIGSQMPEQLQM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+ ++L+   + ++ NPK   V     TAE I+H  V +     +    L   + 
Sbjct: 185 LVFSATIPEKLKPFLKKYMDNPKYAHVEPKRITAENIQHILVPSKQ---RDKLKLLHEMV 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +      GIIF N K  V  +   L+++G  V  +HG +  R R K++    +     +V
Sbjct: 242 TNVQPYLGIIFANTKTTVDEIASFLQEKGMKVGVLHGGLTPRERKKVMKQIDDLEFTYIV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASDLAARG+DI  V HV N+++P+  + Y+HR+GRT RAG  G A T+    D   +  I
Sbjct: 302 ASDLAARGIDIKGVSHVINYELPSDLDFYVHRVGRTARAGSSGIAMTIYELADEDALIQI 361

Query: 361 EK----LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           EK       K +  ++G+    +  L++         +  N I +K+    R+ K     
Sbjct: 362 EKMGVVFENKTI--VHGEWRDADDRLKR-----QRRKKAPNEIEEKAKRLVRKPKAVKPG 414

Query: 417 KSHIPLKESEKISKLQQDIQENDA 440
                 +E +KI + ++   + + 
Sbjct: 415 YKKKMTREMDKIKRQERRKSKRNG 438


>gi|145473681|ref|XP_001462504.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124430344|emb|CAK95131.1| unnamed protein product [Paramecium tetraurelia]
          Length = 706

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 130/458 (28%), Positives = 238/458 (51%), Gaps = 25/458 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL P++  A+   G+  PTPIQ K IP +L   D+   ++TG+GKTA+F++P++  
Sbjct: 12  FESMGLIPELYRAIKSQGFNVPTPIQRKAIPQILAGRDIVACSKTGSGKTAAFLIPLINK 71

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   + V   R LIL PTRELA Q+A   +   K  ++  ++++GG  FE Q + L   
Sbjct: 72  LQ-NHSTVVGIRGLILLPTRELALQIASVLKALLKFSDIQYSIMVGGHGFEGQFESLASN 130

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LICTPGR+L H    +L ++ +++++ DEAD + +MG    ++ I S +P  +Q+L+
Sbjct: 131 PDILICTPGRVLQHLLEDRLKLSRVQMVIYDEADFLFEMGLADQLKQILSHLPSQKQSLM 190

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ ++L   +   L++    +++      ++++  F+           +        
Sbjct: 191 FSATIPEQLSMFASVGLKDYIFCKLDKEFQLPDSMQLHFLFAANDNKLSALIYLIRSLDD 250

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF + +  V  L ++L K   S   ++G +DQ  R + L NFK   +++++ +
Sbjct: 251 TC----LIFASTRFLVDMLSYALNKFHISNVHVYGKMDQLDRKEQLDNFKRNQVKVLIVT 306

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLA+RG+D+P V +V ++D P+  + +IHR GRT RAG+ G  + L++ E+I +I     
Sbjct: 307 DLASRGIDLPFVANVIHYDYPSNPKIFIHRSGRTARAGKAGYVYALISSEEILYIKETMI 366

Query: 363 LIEKKVDWLNGDLSSLNPPLE-----KIDIAQHNHARKNN------------PIPQKSTG 405
            + +K+    GD S   P L       I++   N  + N+               + +  
Sbjct: 367 YVGRKL-VNEGDFSD--PSLSFYGHMPIELLMQNQEKLNDLNDDIEFQNYKEIATRANEK 423

Query: 406 FDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSL 443
           F + + +    K++I       + K +  ++E+  D L
Sbjct: 424 FRKTRGSAKKVKTNIDTSLVHPLFKDKIQVEEDTKDML 461


>gi|256847961|ref|ZP_05553405.1| ATP-dependent RNA helicase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715021|gb|EEU29998.1| ATP-dependent RNA helicase [Lactobacillus coleohominis 101-4-CHN]
          Length = 462

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 128/463 (27%), Positives = 215/463 (46%), Gaps = 35/463 (7%)

Query: 2   DFADLGLSPKVVCAVLDA--GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FAD  L P ++ A+      +V+PTP+Q + IP VL+  +V G +QTG+GKT +F+LP+
Sbjct: 4   TFADFKLKPWLLTALKSKSINFVQPTPVQERVIPEVLKGENVVGQSQTGSGKTHAFLLPI 63

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++++    RV+   T             A    K+          + G        +  
Sbjct: 64  FSMMDVNEQRVQAVVTAPSRELATQTYNAAKQLNKFAPEPLTIHNYVGGTDKEHQIEQLK 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   ++I TPGRILD  N G L ++     VIDEAD  LDMGF+  +  I    P   Q
Sbjct: 124 RKQPQLVIGTPGRILDLINSGALDIHLATQFVIDEADMTLDMGFLEQVDQIAGHFPEKLQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++FSAT+   L+   + +L+NP   E+ T +     +E+  ++T  +            
Sbjct: 184 MMVFSATIPVGLRPFLKKYLENPVVEEIPTETVINPNVENWLMSTKGRDKNSLIYELL-- 241

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       ++F N ++    + H L +QG  V  IHG ++ R R K++   +    Q +
Sbjct: 242 -TMGEPFLALVFANTRERATEIYHYLTEQGLKVALIHGGLEPRERKKMMRQVRNLDFQYV 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+DI  V  V N D+P+  E +IHR+GRTGR   HG A TL A  +    D 
Sbjct: 301 VATDLAARGIDIEGVSLVINDDIPSDLEYFIHRVGRTGRGNLHGTAITLYAPYED---DL 357

Query: 360 IEKLIEKKVDWLNGDLSS---------------------LNPPLE------KIDIAQHNH 392
           I KL E+ + ++   LS+                     L+P ++      K  +     
Sbjct: 358 IAKLEERGIKFIPKVLSNGRVKTTYDRNRRRGYKRRKKALDPTMKGFVKKTKKKVKPGYK 417

Query: 393 ARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDI 435
            R  N I +++    ++++ +  +K+    +   +  + +Q +
Sbjct: 418 KRIRNKIKEEARQQAKQEQRHKIRKAKRARQRQHRAERKKQSL 460


>gi|148231835|ref|NP_001079623.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A [Xenopus laevis]
 gi|28278799|gb|AAH45239.1| MGC53693 protein [Xenopus laevis]
 gi|31580806|gb|AAP51031.1| DECD-box RNA helicase [Xenopus laevis]
 gi|76779487|gb|AAI06295.1| MGC53693 protein [Xenopus laevis]
          Length = 427

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 92/375 (24%), Positives = 165/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ +++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRSIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY     + V      I  +    +    
Sbjct: 106 IEAVEGQVSVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGLSIKKDEDTIRKSCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L N    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 166 HIVVGTPGRILALVRSKILNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH N+ Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCMALAQLLIEQNFPAIAIHRNMSQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ +ED K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEEDAKILNDVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRFEVNVGELPDEID 418


>gi|58428518|gb|AAW77555.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 647

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 126/422 (29%), Positives = 214/422 (50%), Gaps = 6/422 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L P +V  +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++
Sbjct: 82  VTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVM 141

Query: 61  TILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L         +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q 
Sbjct: 142 NRLLNRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQR 201

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIE-ILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L++G DV+I TPGR++D+  + K++  +   I V+DEADRM D+GFI  I+ +   +P
Sbjct: 202 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 261

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                     + T   + +   +    +  ++   + T           +    +    L
Sbjct: 262 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDDE-KQTL 320

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L S+      ++F N K  V  +  +LE+ G+ V  + G++ Q+ R  +L+ F++G 
Sbjct: 321 LLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 380

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 381 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 440

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +  IE  IE+K+         L P      +        +       T F   ++  ++
Sbjct: 441 SLPDIEAYIEQKIPVEPVTSELLTPLPRAARVPVEGEEADDEAGDSVGTIFREAREQRAA 500

Query: 416 QK 417
           ++
Sbjct: 501 EE 502


>gi|84625712|ref|YP_453084.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|161898959|ref|YP_202940.2| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188574752|ref|YP_001911681.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|67461243|sp|Q5GUR8|RHLB_XANOR RecName: Full=ATP-dependent RNA helicase rhlB
 gi|84369652|dbj|BAE70810.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519204|gb|ACD57149.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 574

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 126/422 (29%), Positives = 214/422 (50%), Gaps = 6/422 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L P +V  +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++
Sbjct: 9   VTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVM 68

Query: 61  TILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L         +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q 
Sbjct: 69  NRLLNRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQR 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIE-ILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L++G DV+I TPGR++D+  + K++  +   I V+DEADRM D+GFI  I+ +   +P
Sbjct: 129 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                     + T   + +   +    +  ++   + T           +    +    L
Sbjct: 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDDE-KQTL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L S+      ++F N K  V  +  +LE+ G+ V  + G++ Q+ R  +L+ F++G 
Sbjct: 248 LLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +  IE  IE+K+         L P      +        +       T F   ++  ++
Sbjct: 368 SLPDIEAYIEQKIPVEPVTSELLTPLPRAARVPVEGEEADDEAGDSVGTIFREAREQRAA 427

Query: 416 QK 417
           ++
Sbjct: 428 EE 429


>gi|15828540|ref|NP_325900.1| ATP-dependent RNA helicase [Mycoplasma pulmonis UAB CTIP]
 gi|14089482|emb|CAC13242.1| ATP-DEPENDENT RNA HELICASE [Mycoplasma pulmonis]
          Length = 480

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 140/479 (29%), Positives = 245/479 (51%), Gaps = 21/479 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  + +  +++ ++ + G+ KPT IQ   +P   +  D+ G AQTGTGKTA+F +P+L
Sbjct: 1   MRFTQMNIKSEILKSLDEIGFEKPTKIQEAVLPFAFEGKDIIGQAQTGTGKTAAFAIPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + L+    R++    L++ PTRELA Q+ D     GK     +AL++GG+ +E Q   L 
Sbjct: 61  SNLDCSINRIQ---HLVIAPTRELANQIYDQLNILGKYTCSKIALILGGVSYEKQKAALN 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G ++++ TPGR+ D   + K+ +++I+   +DEAD +L +GF   I  I + +P  RQ 
Sbjct: 118 SGVNIVVATPGRLEDLLAQNKIDLSHIKTFTLDEADELLKIGFYNEIIKIMNKLPKKRQN 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
             F+AT  ++ +K+S+      K I +++   T E I            ++  +      
Sbjct: 178 FFFTATFDEKTKKLSQEITNEAKMISMSSGLETTEKI---DQNFVVVSEEEKLITLVKFL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF   K+ V  L  +L++ GFS   I G++ Q+ R  +L+ FK+  + ++V
Sbjct: 235 DFKKPTASVIFGRTKRRVDELASALQELGFSAVGIQGDMVQKDRTSVLNRFKDQKVNIIV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+D+  V  VFNFD+P   E Y HRIGRTGR  R G+A + V K ++ +I  I
Sbjct: 295 ATDVMARGIDVSHVDLVFNFDLPEEIEYYTHRIGRTGRGTRIGQAISFVKKPEVGYIYKI 354

Query: 361 ---EKLIEKKV-----DWLNGDLSS--LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
               K I K++     + L        +N     ++ AQ+ H R++         +  R+
Sbjct: 355 MTETKSIIKEISIPSKEHLQTVWEDHLINKLSSILEDAQNKHWREDVVQKDILERYSPRE 414

Query: 411 KN---YSSQKSHIPLKESEKISKLQ--QDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            +   +S       L+++ K++     +  + ND++   F+    + +  +NR   N K
Sbjct: 415 LSILLWSYIIQEKGLRKNLKLTPEPPVRYKKNNDSNKGRFQSRTSSHLEKRNRRNFNSK 473


>gi|332019236|gb|EGI59746.1| ATP-dependent RNA helicase WM6 [Acromyrmex echinatior]
          Length = 428

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 91/375 (24%), Positives = 168/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 44  FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 103

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY  +  + V      I  + +  K    
Sbjct: 104 LELTENQVYVLVMCHTRELAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEMLKTVCP 163

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L +    ++ +    +  +     +Q I    P ++Q ++
Sbjct: 164 HIVVGTPGRILALVRNKKLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHSKQVMM 223

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  + V+  +               +  K   L +      
Sbjct: 224 FSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLNGLQQHYVKLKENEKNKKLFEL--LDV 281

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F    IH  + Q  R+     FK+   +++VA+
Sbjct: 282 LEFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVAT 341

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A TLV+ E D K ++ ++
Sbjct: 342 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITLVSDESDAKILNDVQ 401

Query: 362 KLIEKKVDWLNGDLS 376
           +  +  +  L  ++ 
Sbjct: 402 ERFDVNITELPDEID 416


>gi|312959108|ref|ZP_07773627.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
 gi|311286878|gb|EFQ65440.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
          Length = 486

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 206/373 (55%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ + +   L   D  G AQTGTGKTA+F++ ++T 
Sbjct: 99  FHDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQ 158

Query: 63  ----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ-NK 117
                      +  PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q   
Sbjct: 159 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKH 218

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG + ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 219 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 278

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT T+++  +++ +  +P  +E+   +  +E +E    A       K    
Sbjct: 279 AERQTLLFSATFTEDVMNLAKQWTTDPSIVEIEALNVASENVEQHIYAVAGADKYKLLYN 338

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 339 L---INDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 395

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 396 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSY 455

Query: 356 HIDAIEKLIEKKV 368
            + +IE L+ +K+
Sbjct: 456 QLPSIETLLGRKI 468


>gi|271967261|ref|YP_003341457.1| DEAD/DEAH box helicase [Streptosporangium roseum DSM 43021]
 gi|270510436|gb|ACZ88714.1| DEAD/DEAH box helicase domain-containing protein [Streptosporangium
           roseum DSM 43021]
          Length = 571

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 134/399 (33%), Positives = 206/399 (51%), Gaps = 10/399 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LGL   +V  +   G   P PIQ  TIP +L   DV G  QTG+GKT +F LPM+ 
Sbjct: 21  EFTLLGLPKPLVTGLSRQGIDSPFPIQSATIPDILAGSDVLGRGQTGSGKTLAFGLPMMA 80

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +   +AR   P  ++L PTRELA QV D  E  G+  +L +  ++GG+    Q + L R
Sbjct: 81  RIAGSKARPGRPLAVVLVPTRELAMQVTDALEPLGRGLSLRMKTVVGGMSMGRQIEALRR 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G +V++ TPGR+ D   +G+  ++ +++ ++DEAD M D+GF P +  I    P   Q L
Sbjct: 141 GVEVVVATPGRLTDLIQQGECTLDEVQVTILDEADHMCDLGFFPVVSAILQQTPADSQRL 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ K+   FL +P    +   +S+ +T+EH  +  +                
Sbjct: 201 LFSATLDGDVDKLVRRFLTDPVTHSMAPVASSVDTMEHHVLEVHRDDKFPVTAEIA---- 256

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     IIF   +  V  LC  L + G     +HG   Q  R +IL+ FKEG I ++V 
Sbjct: 257 -NREGRTIIFVRTQHGVDRLCKQLAQVGIKAGGLHGGKRQNQRTRILAEFKEGAINVLVC 315

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ + ++  V + D P   ++Y+HR GRT RAG  G   TLV   + +  DA+ 
Sbjct: 316 TDVAARGIHVDNISLVLHVDPPQDHKSYLHRGGRTARAGEKGTVMTLVLPNERRSTDAMT 375

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           +    K   L    +  +P LE++  A+        PIP
Sbjct: 376 RRAGIKPFRLKA--TPGHPRLEEVAGARQPSG---EPIP 409


>gi|291001111|ref|XP_002683122.1| predicted protein [Naegleria gruberi]
 gi|284096751|gb|EFC50378.1| predicted protein [Naegleria gruberi]
          Length = 441

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 93/387 (24%), Positives = 165/387 (42%), Gaps = 13/387 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FV+ +L  
Sbjct: 48  FRDFVLKPEILKAIVDCGFEHPSEVQHECIPQAMIGSDVLCQAKSGMGKTAVFVISVLQQ 107

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +                 Q  + F KY  +  +   +    I    +  K E  
Sbjct: 108 LETIEPKTMCVILCHARELAYQICQEFNRFSKYLPDVRVKSFIGGINIKTHIEQLKSETP 167

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    +    L N    +V +    +        +Q I    P T+Q ++
Sbjct: 168 HVVVGTPGRVLQLAKDGHLKLGNVKYFIVDECDKVLESEEMRSDMQEIFKKTPKTKQVMM 227

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++  ++ F+     +EV   S +  T+            ++           
Sbjct: 228 FSATLSTEMRLTAKKFMNPSSLMEVKVDSDSKLTLHGLQQYFILLKEEEKNGKLLSWLDA 287

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF   K     L   LEK GF    +H ++ Q  R+K   +FK    ++M+++
Sbjct: 288 LEFNQVVIFVRTKNRAEKLKDILEKNGFPCLTMHSDMSQDERLKQYQSFKNFEKRIMIST 347

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE---------- 352
           DL  RG+DI  V  VFN+D+P+  ++Y+HR+GR GR G  G A + ++ +          
Sbjct: 348 DLLGRGIDIQRVNIVFNYDMPDEPDSYLHRVGRAGRFGTKGLAISFISSDMPSKIGSYER 407

Query: 353 ---DIKHIDAIEKLIEKKVDWLNGDLS 376
              D + ++ I+K  E K+  +   + 
Sbjct: 408 TINDQEVLENIQKRFEVKIKEMPTQID 434


>gi|281203514|gb|EFA77714.1| DEAD/DEAH box helicase domain-containing protein [Polysphondylium
           pallidum PN500]
          Length = 400

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 118/377 (31%), Positives = 193/377 (51%), Gaps = 6/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  V   G+ KP+ IQ + I  + +  D+   AQ+GTGKTA+F + +L+
Sbjct: 29  SFDAMDLPKDLLRGVYSYGFEKPSAIQQRAIMPLAKGLDIIAQAQSGTGKTATFTIGILS 88

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +     +    + LI+ PTRELA Q+       G+   +     IGG       + L+ 
Sbjct: 89  QININLMK---CQALIIAPTRELAQQIQKVVTSLGEYLKIKCYACIGGTRVSDDVQNLQN 145

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ +  +RG +   +++I V+DEAD ML  GF   I  I  L+P   Q  
Sbjct: 146 GVHIVVGTPGRVYEMLSRGVITRESVKIFVLDEADEMLSRGFKDQIYEIFRLLPLDIQVG 205

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT+E   ++  F++ P +I V     T E I   +        +    +   L  
Sbjct: 206 LFSATMTEETLSITHKFMKEPVKILVKKDELTLEGIRQFY-VNVGPAEQGKFDVLTDLYE 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   + +Q F+V + HG+   + R  IL +F+ GT ++++ 
Sbjct: 265 TLSITQSVIFCNTRRKVDWLTTKMTEQQFTVSSTHGDQ--KDRDGILQSFRSGTTRVLIT 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P   ENYIHRIGR+GR GR G A   + + + + I  + 
Sbjct: 323 TDLLARGIDVQQVSLVINFDLPLNLENYIHRIGRSGRFGRKGVAINFITQNEQEKIQDLC 382

Query: 362 KLIEKKVDWLNGDLSSL 378
                 +  +  ++S  
Sbjct: 383 SHYNTFIQEMPNNISDF 399


>gi|294875674|ref|XP_002767430.1| ATP-dependent RNA helicase dbp10, putative [Perkinsus marinus ATCC
           50983]
 gi|239868997|gb|EER00148.1| ATP-dependent RNA helicase dbp10, putative [Perkinsus marinus ATCC
           50983]
          Length = 952

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 132/396 (33%), Positives = 197/396 (49%), Gaps = 24/396 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  +  A+   GY +PTPIQ K IP++L   DV  +A+TG+GKTA+FV+PM   
Sbjct: 25  FQTMGLSDPLFKAIQKMGYNQPTPIQRKAIPVILGGSDVVAMARTGSGKTAAFVIPM-IQ 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             KG + V   R +IL PTRELA Q        GK  +L + L++GG   E+Q  +L   
Sbjct: 84  TLKGHSEVVGARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVGGHSMESQFDRLSSN 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLICTPGR++ H     L +  ++ +V DEADR+ +MGF   +Q I    P +RQ LL
Sbjct: 144 PDVLICTPGRLVHHMVEADLSLQRVQYIVFDEADRLFEMGFSDDMQTILKATPPSRQCLL 203

Query: 183 FSATMTDELQKVSE-NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           FSAT+  +L + S      +           T       +       SK  AL+  L + 
Sbjct: 204 FSATLPSQLTQFSRAGLRSDSTEFIRLDVEHTISDTLDLWFLYTTADSKPAALISLLRKL 263

Query: 242 QDTMK----------------------NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
           Q                            I+F   + NV      L + G +   I+G++
Sbjct: 264 QSMGNANADSSTAVVAAGKGGKKARSPKTIVFVATRHNVEFFASLLTQVGITNAPIYGSM 323

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
           DQ  R   LS F+ G   +++ +D+AARG+DIP + +V N+D P+ ++ ++HR GRT RA
Sbjct: 324 DQTQRTSSLSKFRSGKASVLLVTDVAARGIDIPQLDYVINYDFPSSSKLFVHRCGRTARA 383

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDL 375
           G  G   +LV  +D+ +   +   +     +L   L
Sbjct: 384 GAKGLCASLVTHDDMPYAVELMLFLGMPSQFLGRKL 419


>gi|78063799|ref|YP_373707.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. 383]
 gi|77971684|gb|ABB13063.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. 383]
          Length = 465

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 148/422 (35%), Positives = 219/422 (51%), Gaps = 24/422 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GYV  TPIQ  ++P+ L   D+   A+TG+GKTA+F L +L  
Sbjct: 9   FSALSLTPATLANLAQLGYVDMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLAR 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + +IL PTRELA QV     +  +       L +  G P   Q + LE 
Sbjct: 69  LDA---RRFDVQAMILCPTRELADQVTQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  + P TRQTL
Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ F     R       +            Y     +       L +
Sbjct: 186 LFSATYPDGIAKLSQQF----LRNPKEVKLAERHDDSKIRQRFYEVTEDERLHAVGQLLN 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 242 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  +  IE
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGGIE 361

Query: 362 KLIEKKVDWLN-GDLS-----SLNPPLEKIDIAQHNHARKNNPIP-------QKSTGFDR 408
           +  +++V+W    +L+     +L PP+E + I      RK+   P           GFD 
Sbjct: 362 QAQKREVEWHPLAELTPTGTDTLLPPMETLQIL---GGRKDKIRPGDVLGALTGDAGFDG 418

Query: 409 RK 410
           ++
Sbjct: 419 KQ 420


>gi|119775538|ref|YP_928278.1| DEAD-box ATP dependent DNA helicase [Shewanella amazonensis SB2B]
 gi|119768038|gb|ABM00609.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis
           SB2B]
          Length = 407

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 139/405 (34%), Positives = 217/405 (53%), Gaps = 12/405 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA   L   +   +   G+V+PT +Q   IP++L   D+   A TGTGKTA+F+LP+L
Sbjct: 1   MSFAAFTLPSPLANNLAKLGFVEPTEVQAGAIPMMLAGDDLMVKAATGTGKTAAFLLPIL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 E     +  PR L+L PTREL  QV D  +   K   + +A + GG+P E+Q  
Sbjct: 61  ARLLADEVASRNLPAPRALVLVPTRELCQQVYDAAKALAKGSAVRIAQVYGGVPLESQLN 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            ++ G D+++ TPGR+LDH  +  L ++ +  LV DEADRMLDMGF   I+ +   +  T
Sbjct: 121 AIKGGVDLMVATPGRLLDHLKKRTLRIDTVSQLVFDEADRMLDMGFEDEIRALVKKLAKT 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT LFSAT+ D + +++++ + +PK +E+         IE       ++   +      
Sbjct: 181 RQTALFSATLGDNVWQLAKSLMDSPKLLEIAAAKDAKPLIEEQVYQLDSERKFEFICHLL 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              S       +IF   K+    L   L + G S  A+H ++ QR R + L++FK    +
Sbjct: 241 GKNSW---SQVLIFSRTKEGADKLTAKLVEAGHSAVAMHADLSQRQREQNLADFKAADAR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  +  + N ++P + E+Y+HRIGRTGRAG  G A +L+   D   +
Sbjct: 298 VLVATDVAARGLDIQALPCIINVELPFKKEDYVHRIGRTGRAGSAGLAISLLDVADEPLL 357

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLEKI----DIAQHNHARKN 396
            A+E  +++++   W  G    L+   E+       AQ   ARK 
Sbjct: 358 VALEHYLDRRLPQQWYPGFEPDLSIRHERPHSLSKAAQKQKARKR 402


>gi|324505355|gb|ADY42303.1| ATP-dependent RNA helicase DDX23 [Ascaris suum]
          Length = 515

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 134/413 (32%), Positives = 211/413 (51%), Gaps = 30/413 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++A+ GL  +V+  ++  GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 86  NWAEAGLPSEVLDVIIKIGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 145

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  ++    +   P  +I+ PTRELA Q+ +   K+G+   +    +IGG   E Q
Sbjct: 146 WITSLPKIQSNEDQDSGPYAIIMAPTRELAQQIEEETVKFGQLLGIRTVSVIGGASREEQ 205

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL  G +V+I TPGR+LD      L ++    +++DEADRMLDMGF P +Q +   +P
Sbjct: 206 GLKLRLGVEVVIATPGRLLDVLENRYLSLDQCTYVILDEADRMLDMGFEPEVQKVLEYIP 265

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            T           +E    +    +  ++  + T + +                      
Sbjct: 266 VTNLKPDTEEAEKEESIMENFYSKKKYRQTVMFTATMSPAIERLARAYLRRPAVVYIGSV 325

Query: 215 --ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
              T     +       +K   L +LL S+      IIF NQKK    L   L K GF+ 
Sbjct: 326 GRPTERVEQIVYMIGEERKRKKLVELLSSEAFEPPIIIFVNQKKGADMLAKGLTKLGFAP 385

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
           C +HG   Q +R   L+  K+G+  ++VA+D+A RG+DI DV  V N+D+    E+Y HR
Sbjct: 386 CVLHGGKGQDAREYSLAALKDGSKDILVATDVAGRGIDIKDVSLVLNYDMAKSIEDYTHR 445

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEK-LIEKKVDWLNGDLSSLNPPLEK 384
           IGRTGRAG+HGKA T +  ED      +++ L+E  +     +L++     +K
Sbjct: 446 IGRTGRAGKHGKAITFLTPEDKDVFYDLKQCLLESPISTCPPELANHPEAQQK 498


>gi|312375424|gb|EFR22803.1| hypothetical protein AND_14200 [Anopheles darlingi]
          Length = 971

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 136/402 (33%), Positives = 216/402 (53%), Gaps = 15/402 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
            F +      V+  +   G+ +PT IQ +  P+ L   D+ GIAQTG+GKT +++LP  +
Sbjct: 268 SFEEGNFPEYVMNEIKKQGFPRPTAIQSQGWPIALSGRDMVGIAQTGSGKTLAYMLPGLV 327

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNK 117
               +K   R   P  L+L PTRELA Q+     ++G +   N+    + GG     Q +
Sbjct: 328 HISHQKPLTRGDGPIVLVLAPTRELAQQIQTVVREFGNHSKPNIRYTCIFGGALKGPQVR 387

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LERG +V+I TPGR++D   RG   ++    LV+DEADRMLDMGF P I+ I   +   
Sbjct: 388 DLERGVEVVIATPGRLIDFLERGITNLHRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPD 447

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALL 235
           RQ L++SAT   E+Q ++E+FL++  +I + + S  +     +   V    +   K   L
Sbjct: 448 RQVLMWSATWPKEVQTLAEDFLRDYIQINIGSLSLAANHNIHQIVDVCEENEKESKLLKL 507

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            + + S D     IIF   KK V +L  ++ + G+   +IHG+  Q  R  +L +F+ G 
Sbjct: 508 LKEIASTDASNKIIIFVETKKKVDDLLKNIVRDGYGATSIHGDKSQSERDYVLQDFRHGK 567

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+D+AARGLD+ DV +V NFD PN +E+YIHRIGRTGR  ++G A++     + +
Sbjct: 568 STILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCSQYGTAYSFFTPNNGR 627

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
               +  ++E+             P +E +++A+     K  
Sbjct: 628 QARELLSVLEEAGQ---------QPTVELVEMAKQTPGGKGR 660


>gi|294954356|ref|XP_002788127.1| helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239903342|gb|EER19923.1| helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 485

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 100/377 (26%), Positives = 173/377 (45%), Gaps = 5/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL +L  
Sbjct: 52  FRDFLLKPELLRAIVDCGFEHPSEVQHEAIPQAILGTDILCQAKSGMGKTAVFVLAILQQ 111

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN-KKLER 121
           L        +   ++            +         N+   ++ GG+P         + 
Sbjct: 112 LNIDEKDTDVKVLIMCHTRELAYQIKNEFDRFSKYFPNVKNGVVYGGVPISEDKEMLSKS 171

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFIPYIQNITSLVPFTRQT 180
              +LI TPGR+L       L ++++E  V+DE D+    +     IQ++    P  +Q 
Sbjct: 172 HPQILIGTPGRVLALVRGKHLDLSHVEHFVLDECDKCLDKLDMRKDIQSVFMETPVKKQV 231

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSATM+ E+++V + F+  P  I V+  +         +    A+  K        L 
Sbjct: 232 MMFSATMSKEMREVCKRFMNEPHEIFVDDDTKLTLHGLQQYFVRLAENEK--NKKLTDLL 289

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF    +  + L   L +  F   AIH  + Q  R+     FK+   ++MV
Sbjct: 290 DALEFNQVVIFVKSVQRAMALADLLTECNFPAIAIHSRLKQSERIDRYKQFKDFKKRIMV 349

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           A+DL  RG+DI  V  V N+D+P+ ++ Y+HR+GR GR G  G A T V ++ED   ++ 
Sbjct: 350 ATDLFGRGIDIERVNIVINYDIPDSSDQYLHRVGRAGRFGTKGLAITFVSSEEDTDMLNQ 409

Query: 360 IEKLIEKKVDWLNGDLS 376
           ++   E  +  L   + 
Sbjct: 410 VQARFEVTIGELPAQID 426


>gi|325913813|ref|ZP_08176172.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
 gi|325539888|gb|EGD11525.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
          Length = 570

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 127/422 (30%), Positives = 215/422 (50%), Gaps = 6/422 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L P +V  +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++
Sbjct: 9   LTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVM 68

Query: 61  T----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                       +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q 
Sbjct: 69  NRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQR 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIE-ILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L++G DV+I TPGR++D+  + K++  +   I V+DEADRM D+GFI  I+ +   +P
Sbjct: 129 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                     + T   + +   +    +  ++   + T  T        Y    ++   L
Sbjct: 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETI-TAARVRQRIYFPSDEEKQTL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L S+      ++F N K  V  +  +LE+ G+ V  + G++ Q+ R  +L+ F++G 
Sbjct: 248 LLGLLSRSEGARTMVFVNTKAFVERVARTLERNGYRVGVLSGDVPQKKRESLLNRFQKGQ 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +  IE  IE+K+         L P               ++      T F   ++  ++
Sbjct: 368 SLPDIEAYIEQKIPVEPVTTELLTPLPRTPRAPVEGEEVDDDAGDSVGTIFREAREQRAA 427

Query: 416 QK 417
           ++
Sbjct: 428 EE 429


>gi|195388290|ref|XP_002052813.1| GJ17767 [Drosophila virilis]
 gi|194149270|gb|EDW64968.1| GJ17767 [Drosophila virilis]
          Length = 835

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 126/433 (29%), Positives = 203/433 (46%), Gaps = 34/433 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + G  P+++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L+
Sbjct: 408 SWNESGFPPEIIEIIDTVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLS 467

Query: 62  ILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            ++            + P  +I+ PTRELA Q+ +   K+G+   +   +++GG+  E Q
Sbjct: 468 WIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETIKFGQPLGIRTVVVVGGLSREEQ 527

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 528 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 587

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            T           ++    +    +  ++  + T +                        
Sbjct: 588 VTNLKPDSEEAEDEKKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV 647

Query: 215 -ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            +  E      Y             + S       IIF NQKK    L   LEK G++ C
Sbjct: 648 GKPTERTNQIVYMMGENDKRKKLMQILSAGIEPPVIIFVNQKKGADVLAKGLEKLGYNSC 707

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            +HG   Q  R   L+  K G   ++VA+D+A RG+DI DV  V N+D+    E+Y HRI
Sbjct: 708 TLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTHRI 767

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           GRTGRAG+ G A + V K+D      +++ +          +S   P L     AQH   
Sbjct: 768 GRTGRAGKTGVAISFVTKDDSSLFYDLKQCV------TASPVSVCPPELTNHPEAQHKPG 821

Query: 394 RKNNPIPQKSTGF 406
                  ++   F
Sbjct: 822 TVVTKKRREEKIF 834


>gi|325916975|ref|ZP_08179217.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536826|gb|EGD08580.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
          Length = 458

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 128/381 (33%), Positives = 190/381 (49%), Gaps = 6/381 (1%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F+ L LSP +   +   GY   TPIQ +++P +LQ  DV   A TG+GKTA+F L +
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  L+    R +                        G      V L  G           
Sbjct: 61  LQKLDPALTRAQALVLC-PTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I S     RQ
Sbjct: 120 AHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT  D ++ ++   L++P  I V    +  E  +  F        K  A L    
Sbjct: 180 SLLFSATFPDIIRTLAREILKDPVEITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLL-- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ ++FCN +K V  +  SL++ GFS  A+HG+++QR R ++L  F   +  ++
Sbjct: 238 --RFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+HG A +LVA  +     A
Sbjct: 296 VASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPREAARAQA 355

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           +E    + + W    L++  P
Sbjct: 356 LEAEQGQPLKWSRAPLATARP 376


>gi|115397801|ref|XP_001214492.1| hypothetical protein ATEG_05314 [Aspergillus terreus NIH2624]
 gi|121738078|sp|Q0CLX0|PRP28_ASPTN RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|114192683|gb|EAU34383.1| hypothetical protein ATEG_05314 [Aspergillus terreus NIH2624]
          Length = 783

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 127/443 (28%), Positives = 205/443 (46%), Gaps = 41/443 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            +A+ GL  +++  V   GY  PTPIQ   IP+ +Q  D+ G+A TG+GKTA+F+LP   
Sbjct: 344 SWAESGLPSRLLDLVHRVGYKDPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLV 403

Query: 59  ----MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
               +  I E    +   P  ++L PTRELA Q+    +K+      TV  ++GG   E 
Sbjct: 404 YIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTIPLGFTVVSIVGGHSLEE 463

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 464 QAYSLRNGAEIIIATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 523

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ------- 227
           P + +     A           +           T   TA                    
Sbjct: 524 PVSNEKPDSDAAENAAAMSQLHHAGGGRDTRYRQTMMYTATMPTAVERIARKYLRRPAIV 583

Query: 228 ---------------------YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLE 266
                                  K+   L  +L S +     I+F N K+N   +   ++
Sbjct: 584 TIGSAGEAVDTVEQRVELIAGEDKRKKRLGDILSSGEFRPPIIVFVNIKRNCDAIAREIK 643

Query: 267 KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
           + GFS   +HG+  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++    
Sbjct: 644 QWGFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATSI 703

Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
           E+Y HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K +
Sbjct: 704 ESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQML------IKSPISRVPDELRKHE 757

Query: 387 IAQHNHARKNNPIPQKSTGFDRR 409
            AQ    R  +    +S+ F  +
Sbjct: 758 AAQQKPTRGFSKKNDESSAFGGK 780


>gi|302415451|ref|XP_003005557.1| ATP-dependent RNA helicase dhh-1 [Verticillium albo-atrum VaMs.102]
 gi|261354973|gb|EEY17401.1| ATP-dependent RNA helicase dhh-1 [Verticillium albo-atrum VaMs.102]
          Length = 390

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 110/348 (31%), Positives = 172/348 (49%), Gaps = 7/348 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F +  L   ++  + +AG+ KP+PIQ + IP+ L   DV   A+ GTGKTA+FV+P L
Sbjct: 46  LEFENFQLKRDLLMGIFEAGFEKPSPIQEEAIPVALTGRDVLARAKNGTGKTAAFVIPAL 105

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +V   + LIL PTRELA Q +   +  GK+  + V +  GG        +L+
Sbjct: 106 EKI---NPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIIRLQ 162

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILD   +    ++   + ++DEAD++L + F P I+ +    P  RQ 
Sbjct: 163 DPVHIVVGTPGRILDLAGKTVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQV 222

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    ++     F                 T+            K+       L 
Sbjct: 223 MLFSATFPLSVKD----FSDKNMANPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLF 278

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN    V  L   + + G+S    H  + Q++R ++  +F+ G  + +V
Sbjct: 279 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMAQQARNRVFHDFRNGVCRNLV 338

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            SDL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G     ++L
Sbjct: 339 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLADGWSL 386


>gi|255721753|ref|XP_002545811.1| hypothetical protein CTRG_00592 [Candida tropicalis MYA-3404]
 gi|240136300|gb|EER35853.1| hypothetical protein CTRG_00592 [Candida tropicalis MYA-3404]
          Length = 440

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 126/422 (29%), Positives = 193/422 (45%), Gaps = 17/422 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LG++  +  A+      KPT IQ   IP +L+ HD  G A+TG+GKT +F  PML
Sbjct: 1   MSFNELGVAKWLSEALDAMKIYKPTSIQSACIPQILKGHDCIGGAKTGSGKTIAFAAPML 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T   +    V     L+L PTRELA Q+A+ F   G N N+ V++++GG     Q  +L+
Sbjct: 61  TQWSEDPYGVFG---LVLTPTRELALQIAEQFTALGSNMNIKVSVIVGGEDIVKQALELQ 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILV------IDEADRMLDMGFIPYIQNITSLV 174
           +    +I TPGR+ DH         +    V        +       G            
Sbjct: 118 KKPHFVIATPGRLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLKRCFDVLPP 177

Query: 175 PFTRQTLLFSATMTDELQ-----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
              RQTLLF+AT+TD ++       +E                   +           Y 
Sbjct: 178 SEKRQTLLFTATITDAVRALKEKPQTEGKPPVFMHEVETVDKVAIPSTLSISYVFVPSYV 237

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K+  L   L   +      ++F N+      L  +L K  F V ++H  + Q  R   L 
Sbjct: 238 KEAYLNSILNLEKFKDATAVVFVNRTITAEVLRRTLRKLDFRVASLHSEMPQAERTNSLH 297

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G  ++++A+D+A+RGLDIP V  V NFD+P   +++IHR+GRT RAGR G A +++
Sbjct: 298 RFKAGAARILIATDVASRGLDIPTVELVVNFDIPADPDDFIHRVGRTARAGRKGDAVSII 357

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            ++DI  I +IE+ I KK++ L               +     A++ + +      F  R
Sbjct: 358 GEKDIDRIQSIEERINKKMELLEDVDDDKVIKDS---LNVTTAAKRESMMEMDKENFGER 414

Query: 410 KK 411
           KK
Sbjct: 415 KK 416


>gi|156544419|ref|XP_001607535.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 52
           [Nasonia vitripennis]
          Length = 596

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 109/446 (24%), Positives = 197/446 (44%), Gaps = 19/446 (4%)

Query: 2   DFA----DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F     +  +   ++  +   GY +PTPIQ++ IP++LQ   +   A TG+GKTASF+L
Sbjct: 135 SFEQLSTEFKIGSDILQNMRTCGYNQPTPIQMQAIPVMLQGRQILACAPTGSGKTASFLL 194

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI---PFEA 114
           P++  L   R +      +IL PTRELA Q      +  +     V ++           
Sbjct: 195 PIIHQLNGPRKKGFR--AIILSPTRELAKQTYRECIRLSEGRGFRVHIISKINQALTKYG 252

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI----QNI 170
                +    +        L +     + +NN+E L++DEAD++ + G   +     +  
Sbjct: 253 PKSSQKFDILITTPKRLVFLLNQEPPAISLNNVEWLIVDEADKLFEEGTRGFKNQLEEIS 312

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT T  + K   + L+    + +   +S A+ +E   +   ++  K
Sbjct: 313 KACTNENIRRGMFSATNTPAVTKWCRHNLKGLVTVTIGQRNSAADLVEQQLLFVGSERGK 372

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A   + +  +      ++F   K+    L   L   G +V  IH +  Q  R  ++  
Sbjct: 373 LVAF--RNIIQRGLTPPVLVFVQSKERAQELFKELIYDGINVDLIHSDRTQTQRDNVVRC 430

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG I +++ ++L  RG+D   V  V N+D P  A +YIHRIGRTGRAG  GKA T   
Sbjct: 431 FREGKIWVLICTELMGRGIDFIGVNLVINYDFPPSAISYIHRIGRTGRAGHKGKAITFFT 490

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ----KSTGF 406
           ++D  ++ +I  ++      +   + ++    +K    +   A K   I      K+  F
Sbjct: 491 EQDTTNLRSIAAVMRASGCDVPEYMLAMKKHSKKERKKREREAPKRESISTIPKFKTEEF 550

Query: 407 DRRKKNYSSQKSHIPLKESEKISKLQ 432
            ++K    ++K    +K  +   K +
Sbjct: 551 KQKKMGGKAKKLAKTIKPGKMSGKQK 576


>gi|115434786|ref|NP_001042151.1| Os01g0172200 [Oryza sativa Japonica Group]
 gi|55296347|dbj|BAD68263.1| putative p68 RNA helicase [Oryza sativa Japonica Group]
 gi|113531682|dbj|BAF04065.1| Os01g0172200 [Oryza sativa Japonica Group]
 gi|215713416|dbj|BAG94553.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 759

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 127/351 (36%), Positives = 196/351 (55%), Gaps = 2/351 (0%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK-GRARVRMPR 74
           V  AG+  PTPIQ ++ P+ L+  D+  +A+TG+GKT  +++P   +L++        P 
Sbjct: 246 VQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNSRDGPT 305

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTRELA Q+ D  +K+G++  ++   L GG P   Q + LERGAD+++ TPGR+ 
Sbjct: 306 VLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLERGADIVVATPGRLN 365

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D     ++ ++ +  LV+DEADRMLDMGF P I+ I   V   RQTL+F+AT   E++K+
Sbjct: 366 DILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKEVRKI 425

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           + + L NP ++ +                      +K   L Q +       + II    
Sbjct: 426 ASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQ-ILRSQEPGSKIIIFCS 484

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
            K + +       + +   AIHG+  Q  R  +LS F+ G   ++VA+D+AARGLDI D+
Sbjct: 485 TKRMCDQLARNLARQYGASAIHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLDIKDI 544

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
             V N+D P   E+Y+HRIGRTGRAG  G A+T    +D K+   + K++E
Sbjct: 545 RVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLVKILE 595


>gi|45709415|gb|AAH67878.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Homo sapiens]
          Length = 631

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 122/397 (30%), Positives = 210/397 (52%), Gaps = 5/397 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI---LEKG 66
           P ++ +++  G +KPTPIQ +  P++LQ  D+  +AQTGTGKT S+++P           
Sbjct: 231 PDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS 290

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTRELA  V     KY      ++ +  GG     Q + + +G D++
Sbjct: 291 REQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIY-GGRNRNGQIEDISKGVDII 349

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + +I  LVIDEAD+MLDM F P I+ I   V   RQT++ SAT
Sbjct: 350 IATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSAT 409

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             D +++++ ++L++P  + V   +  A       +    +  K+    Q+ +++     
Sbjct: 410 WPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALT-QEFVENMSPND 468

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+F +QK    +L      QG S  ++HGN +Q  + + + +FK G I++++ +D+ +
Sbjct: 469 KVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIVS 528

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLD+ DV HV+N+D P   + Y+HR+G  GR G+ G + TL+ + D K    + K++++
Sbjct: 529 RGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELIKILDR 588

Query: 367 KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
               +  DL  +    +     +H   R   P  ++ 
Sbjct: 589 ANQSVPEDLVVMAEQYKLNQQKRHRETRSREPGQRRK 625


>gi|66812114|ref|XP_640236.1| hypothetical protein DDB_G0282741 [Dictyostelium discoideum AX4]
 gi|74897113|sp|Q54S03|DDX18_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx18; AltName:
           Full=DEAD box protein 18
 gi|60468220|gb|EAL66230.1| hypothetical protein DDB_G0282741 [Dictyostelium discoideum AX4]
          Length = 602

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 116/391 (29%), Positives = 203/391 (51%), Gaps = 7/391 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F++L +      ++ + G+ K TPIQ K+I  +L+  D+ G A+TG+GKT +F++P +
Sbjct: 119 IEFSNLPIEENTKKSIEEMGFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLIPAI 178

Query: 61  TILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L K   + R     +I+ PTRELA Q+     +  K +  T  ++IGG   + + ++L
Sbjct: 179 EVLVKSNFKPRNGTGVIIISPTRELALQIYGVARELMKYHTQTHGIVIGGASKKPEEERL 238

Query: 120 ERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           E+G ++L+ TPGR +    N    +  N++ L+IDEADR+L++GF   +  I   VP TR
Sbjct: 239 EKGVNLLVATPGRLLDHLQNTKGFITKNLKCLIIDEADRILEVGFEEEMHQIIKKVPKTR 298

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT T ++  +++  L N              T+E          S++  LL   
Sbjct: 299 QTMLFSATQTRKVDDIAKVSLNNSPVYVGVDDEREISTVEGLEQGYVVCPSERRFLLLYT 358

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +    V      L      V  +HG   Q+ R      F      +
Sbjct: 359 FLKKNLSKKIIVFLSSCNAVKYTAELLNYIDIPVLELHGRQKQQKRTNTFYEFVNAEKGI 418

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  +D P+  + YIHR+GRT R  G+ G+A   +  +++  +
Sbjct: 419 LICTDVAARGLDIPSVDWIIQYDPPDDPKEYIHRVGRTARGVGKKGRALLFLLPKELGFL 478

Query: 358 DAIEKLIEKKV---DWLNGDLSSLNPPLEKI 385
             + KL +  +   ++    ++++   LEK+
Sbjct: 479 KYL-KLAKVPLNEYEFPKSKIANVQDQLEKV 508


>gi|297817170|ref|XP_002876468.1| hypothetical protein ARALYDRAFT_486308 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322306|gb|EFH52727.1| hypothetical protein ARALYDRAFT_486308 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 639

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 135/390 (34%), Positives = 206/390 (52%), Gaps = 15/390 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA++ L   +   +    YVKPTP+Q   IP++    D+   AQTG+GKTA+F  P+++
Sbjct: 138 TFAEIDLGEVLNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIIS 197

Query: 62  ILEKGRA-------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            + K +        R   P  +IL PTRELA Q+ D   K+     + V +  GG P   
Sbjct: 198 GIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQ 257

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q ++LERG D+L+ TPGR+ D   RG++ +  ++ L +DEADRMLDMGF P I+ I   +
Sbjct: 258 QIRELERGVDILVATPGRLNDLLERGRVSLQMVKFLALDEADRMLDMGFEPQIRKIVQQM 317

Query: 175 PFTRQ----TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                    T+LFSAT   E+Q+++ +FL N   + V    S+ + I       +    +
Sbjct: 318 DMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKR 377

Query: 231 KCALLQQLLQSQDTMKN----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              +     Q ++  +      ++F   KK   +L + L   GF    IHG+  Q+ R  
Sbjct: 378 SHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREV 437

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG  G A 
Sbjct: 438 ALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLAT 497

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
                 +      + +L+++    +   L+
Sbjct: 498 AFFNDNNTSMAKPLAELMQEANQEVPDWLT 527


>gi|156398602|ref|XP_001638277.1| predicted protein [Nematostella vectensis]
 gi|156225396|gb|EDO46214.1| predicted protein [Nematostella vectensis]
          Length = 395

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 109/378 (28%), Positives = 186/378 (49%), Gaps = 9/378 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF  L LSP ++  + +AG+ KP+PIQ+K IPL     D+   A++GTGKT  F +   
Sbjct: 21  IDFHSLLLSPTLLRGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTGKTCVFSV--- 77

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE         + +IL PTRE+A QV D     G +Y+     +  G     ++KK  
Sbjct: 78  IALENVITESNCIQIIILTPTREIAVQVKDVICAIGCHYDGLACKVFIGGISLEEDKKAL 137

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   + + TPGR+     +  L   ++ + ++DEAD++LD  F   I  I S +P  +Q 
Sbjct: 138 KSCHIAVGTPGRVKYLIEQKYLKTESVRMFILDEADKLLDESFQQQINWIFSALPENKQM 197

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + FSAT  + L    + ++  P  + +N    + + I+  +              +++  
Sbjct: 198 MAFSATYPEVLANHLKKYMTEPTFVRLNAADPSLQGIKQFYSLVRFHPLPHKTFQEKVDG 257

Query: 241 SQD-----TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                        ++F N +    +L  +L ++G+    I G   Q  R++ +   K   
Sbjct: 258 LIKLLSSVNFNQCLVFSNYQIRAKSLSDTLCRKGWPSTFIAGYQTQAKRLEAMEKLKSFH 317

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDI 354
            ++++++DL ARG+D  +V  V N DVP+  E Y+HRIGR GR G  G A T VA  ++ 
Sbjct: 318 CRILISTDLTARGIDAENVNLVVNMDVPHNGETYLHRIGRAGRFGTEGMAVTYVANGKEE 377

Query: 355 KHIDAIEKLIEKKVDWLN 372
           + +  IE+ I+ K++ L 
Sbjct: 378 RELRDIERSIDVKMELLP 395


>gi|115471651|ref|NP_001059424.1| Os07g0301200 [Oryza sativa Japonica Group]
 gi|75325214|sp|Q6YS30|RH5_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 5
 gi|34394349|dbj|BAC84904.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|113610960|dbj|BAF21338.1| Os07g0301200 [Oryza sativa Japonica Group]
          Length = 512

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 126/391 (32%), Positives = 200/391 (51%), Gaps = 8/391 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA   L P+V+      G+ +P+PIQ    P +L   D  GIA TG+GKT +F +P L 
Sbjct: 95  SFAATALPPQVLDCCK--GFERPSPIQAYAWPYLLDGRDFIGIAATGSGKTIAFGVPALM 152

Query: 62  ILEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            + +       +  +PR L+L PTRELA Q+AD   + G    ++   L GG     Q  
Sbjct: 153 HVRRKMGEKSAKKGVPRVLVLSPTRELAQQIADVLCEAGAPCGISSVCLYGGTSKGPQIS 212

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G D++I TPGR+ D    G   +N++  +V+DEADRMLDMGF P ++ I S     
Sbjct: 213 ALKSGVDIVIGTPGRMKDLIEMGICRLNDVSFVVLDEADRMLDMGFEPEVRAILSQTASV 272

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRI--EVNTPSSTAETIEHCFVATYAQYSKKCALL 235
           RQT++FSAT    + ++++ F+          +   +    +         +      + 
Sbjct: 273 RQTVMFSATWPPAVHQLAQEFMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRSRDSRLVA 332

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 +      ++F   K+    +   L+++G+S  ++HG+  Q  R K LS FKEG+
Sbjct: 333 LLDKYHKAQRNRVLVFVLYKREATRVETMLQRRGWSAVSVHGDKAQHDRTKALSLFKEGS 392

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             LM+A+D+A+RGLDIPDV  V N+  P   E+Y+HRIGRTGRAG+ G A T   +E+  
Sbjct: 393 CPLMIATDVASRGLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTFFTQENKG 452

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
               +  ++ +    +   L+     ++K +
Sbjct: 453 LAGELVNVLREAGQVVPPALTKFGTHVKKKE 483


>gi|10039331|dbj|BAB13308.1| vasa-related protein CnVAS2 [Hydra vulgaris]
          Length = 890

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 129/388 (33%), Positives = 197/388 (50%), Gaps = 20/388 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++  L P  +  +  A Y +PTPIQ   IP +L + DV   AQTG+GKTASF+LP++T
Sbjct: 451 SFSEANLHPVCLKNLDLAKYKEPTPIQKYAIPAILAKRDVMACAQTGSGKTASFLLPIIT 510

Query: 62  ILEK--------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
            L              V +P   IL PTREL  Q+     K+  N +L   +L GG+   
Sbjct: 511 NLMNEGLDNIDSNIDGVALPLAAILAPTRELVVQLFTEARKFSYNSSLKPVVLYGGVAVA 570

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q  +L  G  +L+ TPGR+ D   RGK+   N++ L++DEAD+M+DMGF P I++I   
Sbjct: 571 HQADRLRMGCHLLVATPGRLEDFIKRGKVNFQNLKYLILDEADKMIDMGFGPQIEHIIEF 630

Query: 174 VPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                + +    +FSAT  D++Q ++  FL +   + V     T   +    +       
Sbjct: 631 SGMPPKGIRNTLMFSATFPDQIQHLAAQFLNDYLFLTVGRVGGTCTDVTQSVIQVSGTKK 690

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           +      + L         ++F  +K++   L + L ++ F    +  +  +  R   L 
Sbjct: 691 R---ETLENLLQTSGTDQTLVFVEKKRDADFLANFLSQKNFPPTILFADRTREKRESALR 747

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G   ++VA+ +AARGLDI DV HV N+D+P  A  Y+HRIGRTGR G  GKA +  
Sbjct: 748 DFRNGIAPILVATAVAARGLDINDVKHVINYDLPKDANEYVHRIGRTGRIGNKGKATSFF 807

Query: 350 A-KEDIKHIDAIEKLI---EKKV-DWLN 372
               D     ++ KL+   E+ V DWL 
Sbjct: 808 DLDRDGSLARSLVKLLSDAEQDVPDWLE 835


>gi|297584627|ref|YP_003700407.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           selenitireducens MLS10]
 gi|297143084|gb|ADH99841.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
           MLS10]
          Length = 432

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 130/371 (35%), Positives = 200/371 (53%), Gaps = 11/371 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    L+  ++ A+ D G   PT IQ + IP V +  DV G +QTGTGKT +F+LP+LT
Sbjct: 4   NFERFRLADYLIEALKDEGIDLPTEIQERIIPAVNKGEDVIGRSQTGTGKTLAFLLPLLT 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
            L+  +   ++    I  PTRELA+Q+ D  ++Y       +T  L++GG   +   +K 
Sbjct: 64  RLDPEKKETQIV---ITAPTRELASQLYDVCKRYASFSETTVTSQLIVGGTDRKRMLEKA 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   ++I TPGRILD      L    +   V+DEAD+MLDMGF+  +  I S++    Q
Sbjct: 121 KQRPHIVIGTPGRILDMMKEAALNPMTVSSFVVDEADQMLDMGFLEEVDRIASMMNENLQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+ + L+   + ++ +PK +EV    S    I H  +    +  K+       +
Sbjct: 181 LLVFSATIPESLKPFLKKYMNHPKEVEVQPKQSAPSEISHWLIPDRDRDRKEI---LVTI 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIF N K++   +   +  +GF+V  IHG+I  R R K+L   +   IQ +
Sbjct: 238 AKDLNPFLAIIFTNTKESADEVFKRMLAEGFNVDCIHGDIQPRQRKKVLKKLQTAEIQYL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DL ARG+D+  V H+ NF++P   E Y+HR+GRT RAG  G A T   + D     +
Sbjct: 298 VATDLVARGIDVKGVSHIINFEIPKELEYYVHRVGRTARAGWDGTAITFFGRSDQP---S 354

Query: 360 IEKLIEKKVDW 370
           IEKL  K + +
Sbjct: 355 IEKLEGKGIHF 365


>gi|242050370|ref|XP_002462929.1| hypothetical protein SORBIDRAFT_02g034740 [Sorghum bicolor]
 gi|241926306|gb|EER99450.1| hypothetical protein SORBIDRAFT_02g034740 [Sorghum bicolor]
          Length = 745

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 118/447 (26%), Positives = 205/447 (45%), Gaps = 11/447 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS K    +  AG+ + + IQ   +P  L   DV G A+TG+GKT +FV+P+L  
Sbjct: 64  FDELPLSQKTKDGLRKAGFTEMSEIQRAALPHALCGRDVLGAAKTGSGKTLAFVIPVLEK 123

Query: 63  LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + R         +IL PT +LA Q+ +     G+ +N +   ++G        K+   
Sbjct: 124 LYRERWGPEDGVGCIILSPTNDLAGQIFEVITTVGQFHNFSGGAIVGKRKGIELEKEHVN 183

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+CTPGR++ H         + +++LV+DEAD++LD GF   +  I S +P  RQT
Sbjct: 184 SLNILVCTPGRLVQHLNETANFDCSQLQLLVLDEADQILDHGFRSQVDAIISQIPKVRQT 243

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT T  ++ ++   L++P+ I V+  + TA        A      +K  +L   ++
Sbjct: 244 LLFSATQTKSVKDLARVSLRDPEYISVHEEAKTATPDTLEQYAMIVPLEQKLNMLWSFIK 303

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  +   + K+         + +            +    + +      T  ++ 
Sbjct: 304 RHLNSKTIVFLSSVKQVKFVYEIFKKLRPGIPLKCMHGRMKYEVQQAIVADFNETTSVLF 363

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D+++RGLDI +V  V   D P   +NYIHR+GRT R  + GK+   +  E+   ++ +
Sbjct: 364 STDISSRGLDIENVDWVVQVDCPENIDNYIHRVGRTARYNKKGKSLVFLCPEEEAMLEKL 423

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
            K  E K+      +    P  E+++    N A      P      D  K+ + +    I
Sbjct: 424 -KATESKIP-----IHIRKPKAEQLEQISQNIASVLVKFPSLQ---DLGKRAFVTYLKSI 474

Query: 421 PLKESEKISKLQQDIQENDADSLGFRG 447
            L++ +K+  L +   E  A      G
Sbjct: 475 YLQKDKKVFDLSRFSAEQFAAYAASLG 501


>gi|229588539|ref|YP_002870658.1| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens SBW25]
 gi|229360405|emb|CAY47262.1| ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 407

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 206/373 (55%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ + +   L   D  G AQTGTGKTA+F++ ++T 
Sbjct: 20  FHDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQ 79

Query: 63  ----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ-NK 117
                      +  PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q   
Sbjct: 80  LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKH 139

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG + ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 140 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 199

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT T+++  +++ +  +P  +E+   +  +E +E    A       K    
Sbjct: 200 AERQTLLFSATFTEDVMNLAKQWTTDPSIVEIEALNVASENVEQHIYAVAGADKYKLLYN 259

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 260 L---VNDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 316

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 317 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSY 376

Query: 356 HIDAIEKLIEKKV 368
            + +IE L+ +K+
Sbjct: 377 QLPSIETLLGRKI 389


>gi|212634102|ref|YP_002310627.1| DEAD box family ATP-dependent RNA helicase [Shewanella
           piezotolerans WP3]
 gi|212555586|gb|ACJ28040.1| ATP-dependent RNA helicase, DEAD box family [Shewanella
           piezotolerans WP3]
          Length = 422

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 157/397 (39%), Positives = 232/397 (58%), Gaps = 15/397 (3%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI--LEKGRARVRMP 73
           +   GY +PTPIQ   IP++L   D+   AQTGTGKTA+F LP+L    ++         
Sbjct: 29  IKQKGYNEPTPIQTAAIPVILSGKDLMASAQTGTGKTAAFTLPILQKLAMQSAGKETDSI 88

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R LIL PTRELA QV  +  +YG N  L   ++ GG+  +AQ   L  G D+++ TPGR+
Sbjct: 89  RALILVPTRELAVQVNKSVTEYGVNTALKSMVIYGGVSIDAQASSLAAGVDIVVATPGRL 148

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193
           LDH  RG L +  I+ LV DEADRMLDMGF+  I  I   +P  RQTLLFSAT +D + +
Sbjct: 149 LDHLRRGSLSLMAIDTLVFDEADRMLDMGFMDEINAILKQLPTERQTLLFSATFSDAIYR 208

Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
           +S+  L  P RIEV+  +S A+++E    A  +              ++   +  +IF  
Sbjct: 209 LSKKLLSKPVRIEVDKANSAADSVEQIVYAVDSDRKAALISHL---INKYHWQQVLIFSR 265

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
           +K+    +   L   G +  A HG++ Q +R ++L++FK G I+ +VA+D+AARGLDI +
Sbjct: 266 KKQTADTITSKLVAAGVAAKAFHGDLSQGAREQVLNDFKAGNIKALVATDVAARGLDIVE 325

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV--DWL 371
           + +V N+++P  AE+YIHRIGRTGRAG  GKA TL +++D + ++ +E L++K++   WL
Sbjct: 326 LNYVVNYEIPFVAEDYIHRIGRTGRAGNSGKAITLYSEDDARLLEELESLLDKRLPQQWL 385

Query: 372 NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
            G      P L K+++      RKN    Q+     R
Sbjct: 386 PG----FEPDLTKMEV----QPRKNGKAAQRQRAKKR 414


>gi|330504745|ref|YP_004381614.1| ATP-dependent RNA helicase RhlB [Pseudomonas mendocina NK-01]
 gi|328919031|gb|AEB59862.1| ATP-dependent RNA helicase RhlB [Pseudomonas mendocina NK-01]
          Length = 482

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 131/380 (34%), Positives = 212/380 (55%), Gaps = 11/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++T 
Sbjct: 96  FHDFKLAPELMHAIHDLGFPYCTPIQAGVLGYTLKGQDAIGRAQTGTGKTAAFLISIITQ 155

Query: 63  ----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +  +  K   L V   +GG+ F+ Q K+
Sbjct: 156 LLQTPAPKERYMGEPRALIIAPTRELVVQIAKDAAELTKYTKLNVMSFVGGMDFDKQLKQ 215

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 216 LESRFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPMK 275

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                  FSAT TD++  +++ +  NP  +E+   +  ++T+E    A  +    K    
Sbjct: 276 GDRQTLLFSATFTDDVMNLAKQWTVNPAIVEIEPENVASDTVEQHVYAVASADKYKLLYN 335

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                +Q+     ++F N+K  V  +   L + G S   + G++ Q  R+K+L  F+ G 
Sbjct: 336 L---VTQNAWDRVMVFANRKDEVRRIEERLTRDGVSAAQMSGDVPQHKRIKVLEGFRAGH 392

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ +  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 393 IRVLVATDVAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGTSISFAGEDDAF 452

Query: 356 HIDAIEKLIEKKVD-WLNGD 374
            +  IE LI +K+   +  D
Sbjct: 453 ALPPIEALIGRKIQCEMPPD 472


>gi|182682666|ref|YP_001830826.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa M23]
 gi|182632776|gb|ACB93552.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23]
 gi|307578947|gb|ADN62916.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 544

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 132/434 (30%), Positives = 215/434 (49%), Gaps = 7/434 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F+   L P ++  +  AG+   TPIQ  T+P+ L   D+ G AQTGTGKT +F++ ++
Sbjct: 10  LNFSSFDLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVV 69

Query: 61  TI----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                           PR LIL PTRELA Q+ ++  K+G N  L  AL+ GG+ ++ Q 
Sbjct: 70  NRLLSSPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDRQR 129

Query: 117 KKLERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L +GADV+I TPGR I        + +   EI V+DEADRM D+GFI  I+ I   +P
Sbjct: 130 EMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLP 189

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                     + T   + +   +       E     + + T        Y    ++   L
Sbjct: 190 ERCSRQTLLFSATLSHRVLELAYEY-MNEPEKLVAETESVTTTRVRQRIYFPAEEEKIPL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L S++     ++F N K  V  +  +L++ G+ V  + G++ QR R  +L+ F++G 
Sbjct: 249 LLGLLSRNEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQKGQ 308

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 309 LEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERYAM 368

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +  IE  IE+K+  +    + L  PL +   A + +      I   S      ++    
Sbjct: 369 SLPDIEAYIEQKIP-VAAVTAELLAPLSRPGRASNGNGDTVGDISPHSRDVLVAQEWRRG 427

Query: 416 QKSHIPLKESEKIS 429
           +    P +   +I 
Sbjct: 428 KPRGSPGERDGRIR 441


>gi|187922064|ref|YP_001893706.1| ATP-dependent RNA helicase DbpA [Burkholderia phytofirmans PsJN]
 gi|187713258|gb|ACD14482.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 467

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 142/405 (35%), Positives = 210/405 (51%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P  +  +   GYV+ TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 11  FSQLPLPPATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + ++L PTRELA QV     +  +       L +  G P   Q   LE 
Sbjct: 71  LDA---RNFAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  RG L + ++  LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 128 GAHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVKQCPKERQTL 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K+S+ F     R       +            Y            LL +
Sbjct: 188 LFSATYPEGIVKLSQQF----LRNPKEVKLAERHDNTKIRQRFYEVTEDGRLHAVGLLLN 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 244 HYRPVSTLAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L +  ++  + ++E
Sbjct: 304 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGSLE 363

Query: 362 KLIEKKVDWLN-GDLSS-----LNPPLEKIDIAQHNHARKNNPIP 400
           +  +++V+W    +L++     L PP+E + I      RK    P
Sbjct: 364 QAQKREVEWHKLSELTAASNERLLPPMETLQIL---GGRKEKIRP 405


>gi|147905268|ref|NP_001080733.1| nuclear RNA helicase [Xenopus laevis]
 gi|28280049|gb|AAH45125.1| Ddx39-prov protein [Xenopus laevis]
          Length = 427

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 92/375 (24%), Positives = 165/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ +++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRSIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY     + V      I  +    +    
Sbjct: 106 IEAVEGQVSVLVMCHTRELAFQISKEYERFSKYMPTVEVAVFFGGLSIKKDEDTIRKSCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L N    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 166 HIVVGTPGRILALVRSKILNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH N+ Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCMALAQLLIEQNFPAIAIHRNMSQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ +ED K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEEDAKILNDVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRFEVNVGELPEEID 418


>gi|28199914|ref|NP_780228.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa Temecula1]
 gi|32363278|sp|Q879Y6|RHLB_XYLFT RecName: Full=ATP-dependent RNA helicase rhlB
 gi|28058045|gb|AAO29877.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
          Length = 543

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 132/434 (30%), Positives = 215/434 (49%), Gaps = 7/434 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F+   L P ++  +  AG+   TPIQ  T+P+ L   D+ G AQTGTGKT +F++ ++
Sbjct: 9   LNFSSFDLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVV 68

Query: 61  TI----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                           PR LIL PTRELA Q+ ++  K+G N  L  AL+ GG+ ++ Q 
Sbjct: 69  NRLLSSPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDRQR 128

Query: 117 KKLERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L +GADV+I TPGR I        + +   EI V+DEADRM D+GFI  I+ I   +P
Sbjct: 129 EMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                     + T   + +   +       E     + + T        Y    ++   L
Sbjct: 189 ERCSRQTLLFSATLSHRVLELAYEY-MNEPEKLVAETESVTTTRVRQRIYFPAEEEKIPL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L S++     ++F N K  V  +  +L++ G+ V  + G++ QR R  +L+ F++G 
Sbjct: 248 LLGLLSRNEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQKGQ 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 308 LEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERYAM 367

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +  IE  IE+K+  +    + L  PL +   A + +      I   S      ++    
Sbjct: 368 SLPDIEAYIEQKIP-VAAVTAELLAPLSRPGRASNGNGDTVGDISPHSRDVLVAQEWRRG 426

Query: 416 QKSHIPLKESEKIS 429
           +    P +   +I 
Sbjct: 427 KPRGSPGERDGRIR 440


>gi|288940348|ref|YP_003442588.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288895720|gb|ADC61556.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
           180]
          Length = 683

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 136/485 (28%), Positives = 220/485 (45%), Gaps = 51/485 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L P+++  + +AG+ + TPIQ +T+P+ LQ HD+ G AQTGTGKTA+F++ ++  
Sbjct: 11  FDSLALDPRILAGLAEAGFTQCTPIQAETLPIALQGHDIAGQAQTGTGKTAAFLVALMQR 70

Query: 63  LEKGRARVRM---------------------------------------------PRTLI 77
           L                                                      PR L+
Sbjct: 71  LLHEPPEAMPESAAAPETPVSADGSPETESLDPANALEAESEPESAPAPARRRRGPRALV 130

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
           L PTRELA Q+  +     K+  L   ++ GG  ++ Q  +L  G D+LI TPGR++D++
Sbjct: 131 LAPTRELAVQIHKDTLALAKHTGLRSTVVYGGTGYQQQRDELAAGVDILIGTPGRLIDYY 190

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
            +    +  IE++V+DEADRM D+GFI  I+ +   +P   Q L    + T   +     
Sbjct: 191 KQHVFDLKRIEVVVLDEADRMFDLGFIKDIRYLFRQMPPVEQRLGMLFSATLSYRVTELA 250

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
           +        V   +          V       +K  LL  L++        I+F N K+ 
Sbjct: 251 YEHMNHPRLVKIETEQVTADRVRQVCYMTANEEKIPLLLGLIRGWPDG-RIIVFVNTKRE 309

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
              +   L+  G     + G++ Q  R+K+L +F  GT+ ++V +D+AARGL IPDV HV
Sbjct: 310 ADRVWGYLQGNGIDTAVLSGDVPQPKRLKLLRDFTNGTLPVLVGTDVAARGLHIPDVTHV 369

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
            N+D+P   E+Y+HRIGRT RAG  G A + V +     +  IE+ I  KV     D  +
Sbjct: 370 VNYDLPEDPEDYVHRIGRTARAGAAGDAVSFVCETYAFCLLDIEQYIGIKVPVEPVD-PA 428

Query: 378 LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQE 437
           L   ++     + + A +     ++  G D+R      +   +  + SE+     +D + 
Sbjct: 429 LLAEVDPRSRIRPDRADRE----ERRDGRDKRGGRERGEGRGVQGRSSERDGASGRDRRP 484

Query: 438 NDADS 442
                
Sbjct: 485 GRERP 489


>gi|156373178|ref|XP_001629410.1| predicted protein [Nematostella vectensis]
 gi|156216410|gb|EDO37347.1| predicted protein [Nematostella vectensis]
          Length = 471

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 116/434 (26%), Positives = 185/434 (42%), Gaps = 19/434 (4%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F+ L    G    ++  V + GY  PTPIQ++  PL+    +V   A TG+GKTA+F+L
Sbjct: 44  TFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPLMAHGREVLCCAPTGSGKTAAFIL 103

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L +L+    +    R +++ PTRELA Q+   F    K        L           
Sbjct: 104 PILHMLKGP--KKSGFRAVVVSPTRELAQQIYREFCHLAKGCAFRIHVLTKANASTNTFG 161

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLM--NNIEILVIDEADRMLDMGFIPYIQNITSLV 174
            K  +  D+L+ TP R++    +    +  +N+E L++DEAD++ + G   + + I ++ 
Sbjct: 162 AKSSKRFDILVTTPNRLVHLLTQEPPGIELHNVEWLILDEADKLFEEGKDGFREQIATIY 221

Query: 175 PFTRQTLLFSATMTDELQK--VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
               +  +     +  L         L     + V      + T        +       
Sbjct: 222 QACNKPDIHRGLFSATLSNGIEEWAGLHLDNHVRVTVGIRNSATATVDQELLFVGQESGK 281

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L  + +  +      +IF   K     L H L   G +V  IH +  Q  R  I+ +F+
Sbjct: 282 LLAVRDIVQKGFTPPVLIFVQSKDRAKELFHELIYDGINVDVIHSDRTQAQRDNIVKSFR 341

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G I +++A++L  RG+D   V  V N+D P  A  YIHRIGRTGRAGR GKA T   +E
Sbjct: 342 TGKIWVLIATELMGRGIDFKGVNLVINYDFPTSAVAYIHRIGRTGRAGRTGKAITFFTEE 401

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-KK 411
           D   + +I  +I+            +   + KI  A     +K    P K        K 
Sbjct: 402 DTTSLRSIANVIK-------SSGCDVPDWMLKIKKASRREKKKLEKAPVKRAAIQTATKY 454

Query: 412 NYSSQKSHIPLKES 425
           + S  K    +KE 
Sbjct: 455 DLSKAKRKRWVKER 468


>gi|320037809|gb|EFW19746.1| ATP-dependent RNA helicase DED1 [Coccidioides posadasii str.
           Silveira]
          Length = 666

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 132/396 (33%), Positives = 205/396 (51%), Gaps = 23/396 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+   
Sbjct: 184 FTNPPLDDHLISNIKLATYKTPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQ 243

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                              GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 244 AFKNGPSAVPTQNANQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVV 303

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 304 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQ 363

Query: 167 IQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 364 IRRIVEGEDMPPVNGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVE 423

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +        +         +IF   K+   +L   L  Q F   AIHG+  QR
Sbjct: 424 YVEDADKRSV---LLDILHTHGTGLTLIFVETKRMADSLSEFLINQNFPATAIHGDRTQR 480

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 481 ERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 540

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G +     + +   +  + +L+++    +   L ++
Sbjct: 541 GLSTAFFNRGNRGVVRDLIELLKEAHQEVPAFLENI 576


>gi|303314883|ref|XP_003067450.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240107118|gb|EER25305.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 668

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 132/396 (33%), Positives = 205/396 (51%), Gaps = 23/396 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+   
Sbjct: 186 FTNPPLDDHLISNIKLATYKTPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQ 245

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                              GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 246 AFKNGPSAVPTQNANQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVV 305

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 306 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQ 365

Query: 167 IQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 366 IRRIVEGEDMPPVNGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVE 425

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +        +         +IF   K+   +L   L  Q F   AIHG+  QR
Sbjct: 426 YVEDADKRSV---LLDILHTHGTGLTLIFVETKRMADSLSEFLINQNFPATAIHGDRTQR 482

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 483 ERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 542

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G +     + +   +  + +L+++    +   L ++
Sbjct: 543 GLSTAFFNRGNRGVVRDLIELLKEAHQEVPAFLENI 578


>gi|195377858|ref|XP_002047704.1| dead box protein 80 [Drosophila virilis]
 gi|194154862|gb|EDW70046.1| dead box protein 80 [Drosophila virilis]
          Length = 465

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 98/393 (24%), Positives = 170/393 (43%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  L L P+++  +   G+  P+ IQ   +P +L     ++   +Q+GTGKTA+FVL M
Sbjct: 79  TFEALHLKPELLKGIYAMGFNTPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +      +  P+ L L PT ELA Q  +   + G+                 +N K+
Sbjct: 139 LSRVNVA---LDHPQVLCLSPTYELAIQTGEVAARMGQFCPDIKLRFAVRGEEIDRNSKI 195

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             R   +      ++ +    +   G       I  ++    Q
Sbjct: 196 TEHILIGTPGKMLDWGLKMRLFDMKKVRVFVLDEADVMIATQGHHDQCIRIHKMLSSQCQ 255

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSAT   E+   +   +  P  I +     + + I+  +V    +  K      Q +
Sbjct: 256 MLFFSATYDKEVMDFARLIVSEPTIIRLMREEESLDNIKQYYVNCKNEDGK--YNAIQNI 313

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               ++   IIFC+ +K    L   +   G SV  + G++    R+ +L  F+ G  +++
Sbjct: 314 YGCISIGQAIIFCHTRKTAAWLAAKMTADGHSVAVLSGDLTVEQRLAVLDRFRSGQEKVL 373

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           + +++ +RG+DI  V  V NFD+P         E Y+HRIGRTGR G+ G A  L+  ++
Sbjct: 374 ITTNVLSRGIDIEQVTIVVNFDLPVDLRGNADCETYLHRIGRTGRFGKSGIAINLIDGEK 433

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
            +     IEK  +K + +LN D +     +EKI
Sbjct: 434 SMAVCRTIEKHFQKDITYLNTDNAD---DIEKI 463


>gi|157876832|ref|XP_001686758.1| DEAD box RNA helicase [Leishmania major strain Friedlin]
 gi|68129833|emb|CAJ09139.1| putative DEAD box RNA helicase [Leishmania major strain Friedlin]
          Length = 657

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 103/383 (26%), Positives = 170/383 (44%), Gaps = 5/383 (1%)

Query: 2   DFADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           D+  L L+P +V A+  +  + + TPIQ + IP  LQ  D+   A+TG GKT +F++P++
Sbjct: 163 DYKSLQLNPHIVSALEQEFKFKELTPIQSRCIPAALQGRDLLAEAKTGAGKTLAFLIPIV 222

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL---TVALLIGGIPFEAQNK 117
            I+ +   R       I+           +        +     T    IGG     +  
Sbjct: 223 EIVCRSGFRPSNGTAAIIIGPTRELCLQIEGVLLKLLKHFNGSLTFLCCIGGQSRNQEGF 282

Query: 118 KLERGADVLICTPGRI-LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           KL  G  +++ +PGR+             N+ +L +DEADR+LD GF   ++ I +L+P 
Sbjct: 283 KLANGIMIVVASPGRLLDHLKLTTDWHTKNLLLLAVDEADRVLDNGFEEDMREIVALLPK 342

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT LFSAT T  +++++                    T++          S++  L+ 
Sbjct: 343 NRQTFLFSATQTTRVEQLARISFHKTPIFISMKSKKDKATVDTLEQGYVVCTSEQRLLVL 402

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                ++  K  I+F + + +V   C           A HG   Q  R      F     
Sbjct: 403 YHFVKKNLKKKVIVFFSSRNSVSFHCELFNYIDVPCIAFHGKQKQHQRSATYMQFCNAPS 462

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++  +D+AARGLDIP+V  +  FD P+    Y+HR+GRT RAGR G A   +  ++   
Sbjct: 463 GVLFTTDVAARGLDIPEVDWIVQFDPPDDPVKYVHRVGRTARAGRCGNALMFLLPQEELF 522

Query: 357 IDAIEKLIEKKVDWLNGDLSSLN 379
           +  +    + KV+    DL+ L 
Sbjct: 523 LKYLYDDAKVKVNEYIFDLTKLK 545


>gi|290462501|gb|ADD24298.1| Spliceosome RNA helicase BAT1 [Lepeophtheirus salmonis]
 gi|290562772|gb|ADD38781.1| Spliceosome RNA helicase BAT1 [Lepeophtheirus salmonis]
          Length = 426

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 92/375 (24%), Positives = 162/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAVLGMDILSQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY     + V      I  + Q  K    
Sbjct: 106 MEPVDGQVSVLVMCHTRELAFQISKEYERFSKYLPGIKVGVFFGGLAISKDEQVLKSNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L +    ++ +    +  +     +Q I    P  +Q ++
Sbjct: 166 HIVVGTPGRILALVRSKKLNLKHTKHFILDECDKMLEQLDMRRDVQEIFRNTPHEKQVMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  + V+  +                  K   L +      
Sbjct: 226 FSATLSKEVRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKLKDTEKNRKLFEL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  V L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCVALAQLLIEQNFPAIAIHRGMSQEERLSRYQQFKDFQKRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P   + Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDTDTYLHRVARAGRFGTKGLAITFVSDESDAKTLNEVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  +  L  ++ 
Sbjct: 404 DRFEVDITELPDEID 418


>gi|142982528|sp|A2QAX7|DRS1_ASPNC RecName: Full=ATP-dependent RNA helicase drs1
 gi|134055839|emb|CAK37361.1| unnamed protein product [Aspergillus niger]
          Length = 824

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 156/486 (32%), Positives = 233/486 (47%), Gaps = 34/486 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  LS  ++  +    +  PTPIQ KTIP+ L   D+ G A TG+GKTA+FV+P+L 
Sbjct: 310 SFQEFNLSRPILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILE 369

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++
Sbjct: 370 RLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKK 429

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 430 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 489

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTD + K+    L  P R+ V+   +TA T+   FV        K       L 
Sbjct: 490 MLFSATMTDTVDKLIRVGLNRPVRLMVDAKKNTAVTLVQEFVRLRPGREDKRLGYLLYLC 549

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      I+F  QKK    +       G     +HG++ Q      + NF+EG    ++
Sbjct: 550 KEIYTGRVIVFFRQKKEAHRVRIIFGLLGLKAAELHGSMSQEQS---VENFREGKAAFLL 606

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + A 
Sbjct: 607 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAA 666

Query: 361 EK------------LIE--------KKVDWLNGDLSSL--NPPLEK-IDIAQHNHARKNN 397
            K            +IE         K + L  ++  +     LEK +  A+    +  N
Sbjct: 667 VKAGKSQGAKIASRVIEPAVADSWAAKAEELADEVEEVLSEEKLEKQLAQAEMQVTKGEN 726

Query: 398 PIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
            I  ++    R K+ +          E +K +  +    E +    G        +  K+
Sbjct: 727 LIKHEAEIKSRPKRTWFE-------TERDKKAARKLGAAELNGPDAGMSKKEKQKLSNKD 779

Query: 458 RGKLND 463
           + +L+D
Sbjct: 780 KKRLDD 785


>gi|325088110|gb|EGC41420.1| ATP-dependent RNA helicase HAS1 [Ajellomyces capsulatus H88]
          Length = 635

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 123/411 (29%), Positives = 201/411 (48%), Gaps = 13/411 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L LS K + A+ D  +   T IQ + IP +L   DV G A+TG+GKT +F++P + 
Sbjct: 157 KFSELNLSDKTMKAIADMKFETMTEIQRRGIPPLLAGRDVLGAAKTGSGKTLAFLIPAVE 216

Query: 62  ILEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + R    +I+  PTRELA Q+     +   +++ T  ++IGG    A+  KL 
Sbjct: 217 MLSALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAGKLT 276

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-VPFTR 178
           +G ++LI TPGR +    N    +  N++ LVIDEADR+L++GF   ++ I  +     R
Sbjct: 277 KGVNLLIATPGRLLDHLQNTQGFVFKNLKALVIDEADRILEVGFEDEMRQIIKILPAEDR 336

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT T +++ ++   L+               T+E          S K  LL   
Sbjct: 337 QTMLFSATQTTKVEDLARISLRQGPLYINVDHRKEHSTVEGLEQGYVICDSDKRFLLLFS 396

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +    V      L      V  ++G   Q+ R      F   T   
Sbjct: 397 FLKRNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLYGKQKQQKRTNTFFEFCNATQGT 456

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R A   G++   +   ++  +
Sbjct: 457 LICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGANGKGRSLMFLQPSEVGFL 516

Query: 358 DAIEKLIEKKVDWLNGDLS-----SLNPPLEKIDIAQHNHARKNNPIPQKS 403
             ++   E +V  +  D       ++   LEK+ I Q+ +  K+     +S
Sbjct: 517 KHLK---EARVPVVEFDFPAKRIVNVQSQLEKL-IGQNYYLNKSAKDGYRS 563


>gi|145524966|ref|XP_001448305.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124415849|emb|CAK80908.1| unnamed protein product [Paramecium tetraurelia]
          Length = 475

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 107/374 (28%), Positives = 179/374 (47%), Gaps = 11/374 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L   +  A+       P+ IQ   IPL+ + HDV  IA+TG+GKT ++ LP   +  + +
Sbjct: 109 LPQNLQEALKAKSITSPSAIQQAIIPLIFEGHDVIAIAETGSGKTLAYALP-GIMHMQAQ 167

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
            ++  PR L+L PT     ++A   +     +  T  L  G         K +    ++ 
Sbjct: 168 PQITGPRILVLAPT----RELAQQIQTQYDLFVKTCCLFGGIQKPLQYFAKPQTPKVIIA 223

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
                +    +   L       +V+DEADRMLDMGF   I+++   V   RQTL FSAT 
Sbjct: 224 TPGRLLDFIKDGLPLKSITQ--VVLDEADRMLDMGFEDQIRDVLKEVRKDRQTLFFSATW 281

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
             E+Q+++ N                +           +  +K   L++    +Q   K 
Sbjct: 282 PKEVQRLANNLCNEDPVFLQLGERGLSVNKNITQSLIISGGNKFEQLIE--YFNQIKDKK 339

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            ++FC +K +   L + L + G +   +HG++ Q  R  I+  F++G+ + ++ ++LA+R
Sbjct: 340 VLVFCQKKIDTQKLEYKLSQHGINARYLHGDLRQNQRDFIMQEFRDGSAKCLITTNLASR 399

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI--KHIDAIEKLIE 365
           GLD+ DV  V N+D P   E+YIHRIGRTGRAG+ G+A + +   D+  K  D + K+ +
Sbjct: 400 GLDVSDVDIVINYDFPENIEDYIHRIGRTGRAGKKGEALSFIEPNDLDSKLKDDLIKVFK 459

Query: 366 KKVDWLNGDLSSLN 379
           +    +   L  L 
Sbjct: 460 QSCQEIPSQLQKLK 473


>gi|268572017|ref|XP_002641212.1| Hypothetical protein CBG09074 [Caenorhabditis briggsae]
          Length = 732

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 135/431 (31%), Positives = 206/431 (47%), Gaps = 34/431 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + G   +V  AV + GY++PTPIQ + IP+ LQ  DV G+A+TG+GKTA+F+LP+L 
Sbjct: 304 NWEESGFPDEVYRAVQEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLV 363

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +E+     + P  +IL PTRELA Q+ +   K+GK   +    +IGG   E Q
Sbjct: 364 WITSLPKIERQEHSDQGPYAIILAPTRELATQIEEETNKFGKLLGIRTVSVIGGASREEQ 423

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL  G +V+I TPGR++D      LL+N    +++DEADRMLDMGF P +Q I   +P
Sbjct: 424 GMKLRMGVEVVIATPGRLMDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKILEYLP 483

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            +           +E            ++  + T + +                      
Sbjct: 484 ASNMKKDTDEFDNEEALMKGFETRDKYRQTVMFTATMSPAIERLARQYLRRPAVVHIGNA 543

Query: 215 -ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            +  E      Y     +       + SQ      I+F N+K    +L   L K G    
Sbjct: 544 GKPTERVEQVVYMITKDRKPKKLLEVISQHDKYPIIVFVNRKHGADSLAKGLAKVGKKTS 603

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            +HG   Q +R   L   K+   +++VA+D+A RG+DI DV  V N+D+    E+Y HRI
Sbjct: 604 VLHGGKGQDAREYALKALKDQETKILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRI 663

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           GRTGRAG+HGKA T +  +D      +++ +      L   +SS  P L   + A+    
Sbjct: 664 GRTGRAGKHGKAITFLTADDTAVYYDLKQCL------LESPISSCPPELANHEAARAKPG 717

Query: 394 RKNNPIPQKST 404
           +  +   Q  T
Sbjct: 718 QITSKKRQDET 728


>gi|238798166|ref|ZP_04641653.1| ATP-independent RNA helicase dbpA [Yersinia mollaretii ATCC 43969]
 gi|238718020|gb|EEQ09849.1| ATP-independent RNA helicase dbpA [Yersinia mollaretii ATCC 43969]
          Length = 460

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 127/374 (33%), Positives = 204/374 (54%), Gaps = 8/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L 
Sbjct: 5   SFSTLTLPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLD 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            +  G     + + L+L PTRELA QV+    +  +       L + G  P   Q   L 
Sbjct: 65  KIAVGE---FVTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLI 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRI +H  +  L++++++ILV+DEADRMLDMGF   I ++ +  P  RQT
Sbjct: 122 HAPHIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAINDVIAYTPPQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++         +R  VN      +         +    +K   L   + 
Sbjct: 182 LLFSATYPVGIEQ----ISARVQREPVNVEVEDGDEAPAIEQVFFETTREKRLPLLISVL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+  ++  +LE +G SV A+HG+++QR R ++L  F   + +++V
Sbjct: 238 SHYQPASAVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+  V NF++    E ++HRIGRTGRAG  G A +L   +++    AI
Sbjct: 298 ATDVAARGLDIKDLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHAI 357

Query: 361 EKLIEKKVDWLNGD 374
           E  ++ KV W   +
Sbjct: 358 EDYLQIKVKWTPAE 371


>gi|82539875|ref|XP_724294.1| DEAD/DEAH box helicase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23478891|gb|EAA15859.1| DEAD/DEAH box helicase, putative [Plasmodium yoelii yoelii]
          Length = 715

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 124/423 (29%), Positives = 201/423 (47%), Gaps = 47/423 (11%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+DL     ++  + +  + +PT IQ  T P+ L   D+ G+A+TG+GKT +FVLP L 
Sbjct: 290 NFSDLDFHESILNYLNEK-FKEPTAIQKITWPIALSGKDLIGVAETGSGKTLAFVLPCLM 348

Query: 62  ILEKGRARVR-----------------------------------------MPRTLILEP 80
            + K + +                                               LIL P
Sbjct: 349 HILKHKQKEMEENGVEPIKNNEVKLSENDNNDNNYDPDFEKEFQNDDSENRKTYGLILLP 408

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TREL  QV +  + +    NL    + GG+P   Q   +++GAD+++ TPGR+LD+   G
Sbjct: 409 TRELCMQVLNEIKNFESELNLKAVAVYGGVPKYFQINNIKKGADIIVATPGRLLDYLENG 468

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200
            + +     +VIDEADR+LDMGF   ++ I + +   +Q L  +AT  ++++K++ +F  
Sbjct: 469 IINLLRCIYVVIDEADRLLDMGFEKQLRKIMTQINKNKQLLFLTATWPEQVRKLAYDFCS 528

Query: 201 NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVN 260
                     S              +        L   L+        +IFC+ K+N  N
Sbjct: 529 FDPVKIQIGKSELTANKNIEQQVIVSSSIDLKKKLLDWLKDNYENNKILIFCDTKRNCDN 588

Query: 261 LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNF 320
           LC  L    ++  +IHG+  QR R +IL+N+K     ++VA+D+A+RGLDI ++  V N+
Sbjct: 589 LCKELRYHQYNSLSIHGDKQQRERDRILNNYKNDRCNILVATDVASRGLDIKNISIVINY 648

Query: 321 DVPNRAENYIHRIGRTGRAGRHGKAFTL-----VAKEDIKHIDAIEKLIEKKVDWLNGDL 375
           D+PN  E+YIHRIGRTGRAG  GK+           +  +    + KL+ K    +  +L
Sbjct: 649 DIPNTIEDYIHRIGRTGRAGNKGKSILFFPYDYYVPQKQRFAKELVKLLNKTNQQVPKEL 708

Query: 376 SSL 378
             +
Sbjct: 709 REI 711


>gi|19075533|ref|NP_588033.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces pombe 972h-]
 gi|21542025|sp|O13370|DED1_SCHPO RecName: Full=ATP-dependent RNA helicase ded1; AltName:
           Full=Multicopy suppressor of overexpressed cyr1 protein
           2
 gi|2558968|gb|AAC04893.1| suppressor of uncontrolled mitosis [Schizosaccharomyces pombe]
 gi|3080516|emb|CAA18646.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces pombe]
 gi|3514095|gb|AAC34121.1| putative DEAD box RNA helicase Dep1 [Schizosaccharomyces pombe]
 gi|4582232|emb|CAB40192.1| putative RNA helicase [Schizosaccharomyces pombe]
          Length = 636

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 134/393 (34%), Positives = 209/393 (53%), Gaps = 21/393 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F    L+  ++  +  +GY +PTP+Q  +IP+V    D+   AQTG+GKTA F+ P+  
Sbjct: 170 EFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILS 229

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                               R R   P TLIL PTREL  Q+ +   K+     +    +
Sbjct: 230 LAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAV 289

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    AQ +++++G D+L  TPGR++D  +RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 290 YGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQ 349

Query: 167 IQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I++I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 350 IRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKV- 408

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             + + S+K + L  +L +       +IF   K+    L   L    F   +IHG+  QR
Sbjct: 409 -VHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQR 467

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   +MVA+ +A+RGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 468 ERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 527

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDL 375
           G+A     + +      + +L+++        L
Sbjct: 528 GQAVAFFNRNNKGIAKELIELLQEANQECPSFL 560


>gi|2992158|dbj|BAA25324.1| Moc2 RNA helicase [Schizosaccharomyces pombe]
          Length = 636

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 134/393 (34%), Positives = 209/393 (53%), Gaps = 21/393 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F    L+  ++  +  +GY +PTP+Q  +IP+V    D+   AQTG+GKTA F+ P+  
Sbjct: 170 EFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILS 229

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                               R R   P TLIL PTREL  Q+ +   K+     +    +
Sbjct: 230 LAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAV 289

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    AQ +++++G D+L  TPGR++D  +RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 290 YGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQ 349

Query: 167 IQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I++I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 350 IRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKV- 408

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
             + + S+K + L  +L +       +IF   K+    L   L    F   +IHG+  QR
Sbjct: 409 -VHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQR 467

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   +MVA+ +A+RGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 468 ERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 527

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDL 375
           G+A     + +      + +L+++        L
Sbjct: 528 GQAVAFFNRNNKGIAKELIELLQEANQECPSFL 560


>gi|312082520|ref|XP_003143478.1| ATP-dependent RNA helicase DDX41 [Loa loa]
 gi|307761359|gb|EFO20593.1| ATP-dependent RNA helicase DDX41 [Loa loa]
          Length = 657

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 136/390 (34%), Positives = 197/390 (50%), Gaps = 17/390 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++   P V+ A+ D   + PT IQ++ IP+ L   D+ GIA TG+GKT +F LP++ 
Sbjct: 216 SFIEMKFPPPVIKALRDKKIICPTVIQMQGIPVALSGRDMIGIASTGSGKTLTFALPLVM 275

Query: 62  ILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-------TVALLIGG 109
              +            P  LI+ P+RELA Q+ D  EK  +N           V L IGG
Sbjct: 276 FCLEQEVSLPFRHGEGPYGLIIVPSRELAKQIHDVIEKLFENICDGTKFPRLRVGLCIGG 335

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +P   Q +  ERG  V + TPGR+ D  ++    +     LV+DEADRMLDMGF   I+ 
Sbjct: 336 LPISEQARVFERGVHVCVATPGRLSDLLSKKIFNLQVCRYLVLDEADRMLDMGFEEEIRT 395

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I S     RQTLLFSATM  ++Q     F ++     V      A       V       
Sbjct: 396 IFSFFKGQRQTLLFSATMPRKIQN----FARSALVRAVIVNVGRAGAASLNVVQEIEYVR 451

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
               L + L   Q T    +IF  +K +V N+   L  +G  V ++HG  DQ+ R   + 
Sbjct: 452 ADEKLTRILDCLQKTAPRVLIFAEKKNDVDNIYEYLLVKGVDVASLHGGKDQKDRHTGVD 511

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+ G   ++VA+D+A++GLD  ++ HV NFD+P   ENY+HRIGRTGR+GR G A T +
Sbjct: 512 AFRRGEKDVLVATDVASKGLDFENIQHVINFDMPEDIENYVHRIGRTGRSGRKGMATTFI 571

Query: 350 AKE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
            +  D+  +  +  L+ +    L   L  +
Sbjct: 572 NRRADMSVLQDLRALLLEAGQELPLFLRDM 601


>gi|157963312|ref|YP_001503346.1| ATP-dependent RNA helicase DbpA [Shewanella pealeana ATCC 700345]
 gi|157848312|gb|ABV88811.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 469

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 144/402 (35%), Positives = 222/402 (55%), Gaps = 10/402 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L  +++  +   GY   TPIQ +++P +L   DV G  +TG+GKTA+F L +L  
Sbjct: 14  FSSLKLKTELLDNLKTMGYDSMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLHK 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+  R R++    L+L PTRELA QVA       +  +    L +  G+P   Q   LE 
Sbjct: 74  LDVKRFRIQ---CLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEH 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG+L + N+  LV+DEADRML+MGF   ++ I   +P  RQTL
Sbjct: 131 GAHIIVGTPGRIIDHLDRGRLDLENVHTLVLDEADRMLEMGFQVELEGIMDRMPIERQTL 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  +++Q +++  +  P  ++V +   T  T            +       +LL  
Sbjct: 191 LFSATFPEQIQSIADKIMFKPVLVKVAS---THATSTIEQHFYEVGNNNDRMRALKLLLL 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ ++FCN K+   ++   L+  GFSV A+HG+++QR R + L  F   ++ +MVA
Sbjct: 248 QYRPESAVVFCNTKRETKDVAAQLKNDGFSVVALHGDLEQRDRDQTLLQFANKSVSIMVA 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N+ V    E +IHRIGRTGRAG  G A T    ED   I  +E
Sbjct: 308 TDVAARGLDIDALDAVINYHVAYDTEVHIHRIGRTGRAGSKGSAHTFYNDEDGYKIALLE 367

Query: 362 KLIEKKV--DWLNGDLSSLNPPLEKIDI-AQHNHARKNNPIP 400
             +E+ +  + L  +      P++ + I  Q +  +K    P
Sbjct: 368 DYLERDIVNEALPSEHLLDTFPVQPVMITLQIDGGKKQKLRP 409


>gi|212541586|ref|XP_002150948.1| ATP-dependent RNA helicase, putative [Penicillium marneffei ATCC
           18224]
 gi|210068247|gb|EEA22339.1| ATP-dependent RNA helicase, putative [Penicillium marneffei ATCC
           18224]
          Length = 584

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 113/408 (27%), Positives = 204/408 (50%), Gaps = 7/408 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS + + A+ + G+   T IQ + IP ++   DV G A+TG+GKT +F++P + 
Sbjct: 106 KFTELNLSERTLEAIKEMGFETMTEIQQRAIPPLMAGRDVLGAAKTGSGKTLAFLIPAIE 165

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   + + R    + IL PTRELA Q+     +    ++ T  +++GG    A+ +KLE
Sbjct: 166 LLHSLKFKPRNGTGVLILSPTRELALQIWGVARQLLDKHSQTHGIVMGGANRRAEAEKLE 225

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G ++L+ TPGR +    N    +  N+  LVIDEADR+L++GF   ++ I  ++    +
Sbjct: 226 KGVNLLVATPGRLLDHLQNTKGFVFKNLRQLVIDEADRILEIGFEDEMKQIMKILGNGER 285

Query: 180 TLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
               FSAT T +++ ++   L+         P     T++            K  LL   
Sbjct: 286 QTSLFSATQTTKVEDLARISLKPGPLYINVVPRMENATVDRLEQGYVVCEPDKRFLLLFS 345

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +   +V      L      V +IHG   Q+ R      F      +
Sbjct: 346 FLKRNLKKKIIVFLSSCNSVNYYSELLNYIDLPVLSIHGKQKQQKRTSTFFEFVNSERGI 405

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP++ +V  +D P+   +YIHR+GRT R A   G++   +   ++  +
Sbjct: 406 LICTDVAARGLDIPEIDYVVQYDPPDDPRDYIHRVGRTARGAKAKGRSLMFLQPSEMGFL 465

Query: 358 DAIE--KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
             ++  K+   + ++    + ++   LEK+ I+Q+ +  K+     +S
Sbjct: 466 THLKEAKVPVVEFEFPQKKIINVQSQLEKL-ISQNYYLNKSAKEGYRS 512


>gi|169602116|ref|XP_001794480.1| hypothetical protein SNOG_03936 [Phaeosphaeria nodorum SN15]
 gi|160706086|gb|EAT89141.2| hypothetical protein SNOG_03936 [Phaeosphaeria nodorum SN15]
          Length = 727

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 128/422 (30%), Positives = 198/422 (46%), Gaps = 30/422 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + GL  KV+  V   GY +P+ +Q   IP+ LQ  D+ G+A TG+GKTASFVLP+L 
Sbjct: 309 NWQESGLPDKVLRLVEHVGYAEPSAVQRAAIPIALQCRDLIGVAVTGSGKTASFVLPLLV 368

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + +        R   P  ++L PTRELA Q+     K+        A+++GG   E Q 
Sbjct: 369 YISQLPPLGPSNRADGPYAIVLAPTRELAQQIEVETRKFAAPLGFNTAVIVGGHSIEEQA 428

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            ++  GA+++I TPGR++D   R  L+++    +++DEADRM+DMGF   +  I   +P 
Sbjct: 429 FQMRDGAEIVIATPGRLVDCIERRMLVLSQCTYVIMDEADRMIDMGFEEPVNKILDALPV 488

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE------------------ 218
           T +     A       K             + T                           
Sbjct: 489 TNEKPDSDAAEDPNAMKRGMYRQTMMYTATMPTAVERIARKYLRRPAIVTIGNVGEAVET 548

Query: 219 -HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
               V       K+   LQ++L S +     I+F N K+N   +   ++  GFS   +HG
Sbjct: 549 VEQRVEHIQGEEKRKKRLQEILNSGEFTPPIIVFVNIKRNCDAIARDIKNMGFSSVTLHG 608

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           +  Q  R   L+  +E  + ++VA+DLA RG+DI DV  V NF++    E+Y HRIGRTG
Sbjct: 609 SKTQEQREAALAQLREHRVDVLVATDLAGRGIDITDVSLVVNFNMATSIESYTHRIGRTG 668

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           RAG+ G A T    ED   +  +++++ K        +S +   L K + AQ    R   
Sbjct: 669 RAGKSGVAITFWGNEDADVLYDLKQMLTK------SQISKVPEDLRKHEAAQQKGGRNKE 722

Query: 398 PI 399
             
Sbjct: 723 KK 724


>gi|118597486|sp|Q0UWC8|PRP28_PHANO RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
          Length = 746

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 128/422 (30%), Positives = 198/422 (46%), Gaps = 30/422 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + GL  KV+  V   GY +P+ +Q   IP+ LQ  D+ G+A TG+GKTASFVLP+L 
Sbjct: 328 NWQESGLPDKVLRLVEHVGYAEPSAVQRAAIPIALQCRDLIGVAVTGSGKTASFVLPLLV 387

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + +        R   P  ++L PTRELA Q+     K+        A+++GG   E Q 
Sbjct: 388 YISQLPPLGPSNRADGPYAIVLAPTRELAQQIEVETRKFAAPLGFNTAVIVGGHSIEEQA 447

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            ++  GA+++I TPGR++D   R  L+++    +++DEADRM+DMGF   +  I   +P 
Sbjct: 448 FQMRDGAEIVIATPGRLVDCIERRMLVLSQCTYVIMDEADRMIDMGFEEPVNKILDALPV 507

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE------------------ 218
           T +     A       K             + T                           
Sbjct: 508 TNEKPDSDAAEDPNAMKRGMYRQTMMYTATMPTAVERIARKYLRRPAIVTIGNVGEAVET 567

Query: 219 -HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
               V       K+   LQ++L S +     I+F N K+N   +   ++  GFS   +HG
Sbjct: 568 VEQRVEHIQGEEKRKKRLQEILNSGEFTPPIIVFVNIKRNCDAIARDIKNMGFSSVTLHG 627

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           +  Q  R   L+  +E  + ++VA+DLA RG+DI DV  V NF++    E+Y HRIGRTG
Sbjct: 628 SKTQEQREAALAQLREHRVDVLVATDLAGRGIDITDVSLVVNFNMATSIESYTHRIGRTG 687

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           RAG+ G A T    ED   +  +++++ K        +S +   L K + AQ    R   
Sbjct: 688 RAGKSGVAITFWGNEDADVLYDLKQMLTK------SQISKVPEDLRKHEAAQQKGGRNKE 741

Query: 398 PI 399
             
Sbjct: 742 KK 743


>gi|90110536|gb|ABD90550.1| DEAD box protein 80 [Drosophila virilis]
 gi|90110538|gb|ABD90551.1| DEAD box protein 80 [Drosophila virilis]
          Length = 465

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 98/393 (24%), Positives = 170/393 (43%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  L L P+++  +   G+  P+ IQ   +P +L     ++   +Q+GTGKTA+FVL M
Sbjct: 79  TFEALHLKPELLKGIYAMGFNTPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +      +  P+ L L PT ELA Q  +   + G+                 +N K+
Sbjct: 139 LSRVNVA---LDHPQVLCLSPTYELAIQTGEVAARMGQFCPDIKLRFAVRGEEVDRNSKI 195

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             R   +      ++ +    +   G       I  ++    Q
Sbjct: 196 TEHILIGTPGKMLDWGLKMRLFDMKKVRVFVLDEADVMIATQGHHDQCIRIHKMLSSQCQ 255

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSAT   E+   +   +  P  I +     + + I+  +V    +  K      Q +
Sbjct: 256 MLFFSATYDKEVMDFARLIVSEPTIIRLMREEESLDNIKQYYVNCKNEDGK--YNAIQNI 313

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               ++   IIFC+ +K    L   +   G SV  + G++    R+ +L  F+ G  +++
Sbjct: 314 YGCISIGQAIIFCHTRKTAAWLAAKMTADGHSVAVLSGDLTVEQRLAVLDRFRSGQEKVL 373

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           + +++ +RG+DI  V  V NFD+P         E Y+HRIGRTGR G+ G A  L+  ++
Sbjct: 374 ITTNVLSRGIDIEQVTIVVNFDLPVDLRGNADCETYLHRIGRTGRFGKSGIAINLIDGEK 433

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
            +     IEK  +K + +LN D +     +EKI
Sbjct: 434 SMAVCRTIEKHFQKDITYLNTDNAD---DIEKI 463


>gi|313679216|ref|YP_004056955.1| ATP-dependent RNA helicase dbpa [Oceanithermus profundus DSM 14977]
 gi|313151931|gb|ADR35782.1| ATP-dependent RNA helicase DbpA [Oceanithermus profundus DSM 14977]
          Length = 528

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 130/368 (35%), Positives = 195/368 (52%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGLS + + A+ + G   PTPIQ + +P  L   DV G+A+TGTGKT +F LP+   
Sbjct: 11  FRELGLSEQALAALEEKGIATPTPIQNEALPAALAGGDVLGLARTGTGKTLAFALPIAER 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE  R   R PR L+L PTRELA QVA   E    +    +  + GG  + +Q   L+RG
Sbjct: 71  LEPSRTPGRPPRALVLAPTRELALQVAGELEWVAPHL--RIVTVYGGTGYGSQAAALKRG 128

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADV++ TPGR +D+ NRG L +  + I V+DEAD ML MGF   ++ +    P  RQTL+
Sbjct: 129 ADVVVATPGRAIDYLNRGVLDLAQVRIAVLDEADEMLSMGFEEAVETLLGATPAERQTLM 188

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+    ++     L      E    +   +                       L   
Sbjct: 189 FSATLPGWAKR-----LVGRHLKEPTVVNVVQDEEVSYREIAIEASPSARMSALSDLLHA 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+F   KK    +  +L  +G +  A+HG+++Q  R + +  F+ G + ++VA+
Sbjct: 244 HGPERAIVFTRTKKEADEVARALTARGHAAEAVHGDLNQTQRERSVGRFRSGQVGVLVAT 303

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIP+V  V +  +P RAE+Y HR GRTGRAGR G      +  + + +  +E+
Sbjct: 304 DVAARGLDIPEVDLVVHLRLPERAESYQHRSGRTGRAGRSGTVIIFHSSRERRELGQLER 363

Query: 363 LIEKKVDW 370
            + +K + 
Sbjct: 364 AVGRKFEH 371


>gi|146104248|ref|XP_001469774.1| DEAD box RNA helicase [Leishmania infantum]
 gi|134074144|emb|CAM72886.1| putative DEAD box RNA helicase [Leishmania infantum JPCM5]
 gi|322503544|emb|CBZ38630.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 658

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 103/383 (26%), Positives = 170/383 (44%), Gaps = 5/383 (1%)

Query: 2   DFADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           D+  L L+P +V A+  +  + + TPIQ + IP  LQ  D+   A+TG GKT +F++P++
Sbjct: 164 DYKSLQLNPHIVSALEQEFKFKELTPIQSRCIPAALQGRDLLAEAKTGAGKTLAFLIPIV 223

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL---TVALLIGGIPFEAQNK 117
            I+ +   R       I+           +        +     T    IGG     +  
Sbjct: 224 EIVCRSGFRPSNGTAAIIIGPTRELCLQIEGVLLKLLKHFNGSLTFLCCIGGQSRNQEGF 283

Query: 118 KLERGADVLICTPGRI-LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           KL  G  +++ +PGR+             N+ +L +DEADR+LD GF   ++ I +L+P 
Sbjct: 284 KLANGVMIVVASPGRLLDHLKLTTDWHTKNLLLLAVDEADRVLDNGFEEDMREIVALLPK 343

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT LFSAT T  +++++                    T++          S++  L+ 
Sbjct: 344 NRQTFLFSATQTTRVEQLARISFHKTPIFISMKSKKDKATVDTLEQGYVVCASEQRLLVL 403

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                ++  K  I+F + + +V   C           A HG   Q  R      F     
Sbjct: 404 YHFVKKNLKKKVIVFFSSRNSVSFHCELFNYIDVPCIAFHGKQKQHQRSATYMQFCNAPS 463

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++  +D+AARGLDIP+V  +  FD P+    Y+HR+GRT RAGR G A   +  ++   
Sbjct: 464 GVLFTTDVAARGLDIPEVDWIVQFDPPDDPVKYVHRVGRTARAGRCGNALMFLLPQEELF 523

Query: 357 IDAIEKLIEKKVDWLNGDLSSLN 379
           +  +    + KV+    DL+ L 
Sbjct: 524 LKYLYDDAKVKVNEYTFDLTRLK 546


>gi|313114933|ref|ZP_07800430.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622755|gb|EFQ06213.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 395

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 199/366 (54%), Gaps = 7/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M +++L  S  +  AV   G+ + T IQ KTIP+++  +DV   A TGTGKT +F +P+ 
Sbjct: 1   MLYSELQCSDAIHKAVERMGFAEMTEIQEKTIPVMMAGYDVIAKAPTGTGKTCAFGIPVA 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             +       + P+ +I+ PTRELA Q+A   E+            +  G   E Q K+L
Sbjct: 61  EHI---LPENKYPQAVIMAPTRELAQQIAQELEELTYFMPEVQVACVYGGANMEKQAKRL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  +++ TPGR++DH+    + ++++  +V+DEAD ML+MGF   +++I  ++   + 
Sbjct: 118 AEGCQIVVATPGRLMDHYKHHSIDISHVTQIVLDEADEMLNMGFYKDVRHIIEMMKARKS 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +FSAT++ E+  +   +  N + I   T     E+             +        +
Sbjct: 178 LSMFSATISREVMDIGWLYQHNAEEI---TVQPKEESQPKITQYMLETSGRNKLSDLAQI 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +  K  ++FC+ K N   L + L + GFSV  +HG++ Q+ R +I+ NF++G + ++
Sbjct: 235 IIGENYKRVMVFCDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQNFRDGKLAIL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ DV  V N+DVP+  E+Y HRIGRTGRA + G ++     E+ K +  
Sbjct: 295 VATDVAARGIDVSDVDAVINYDVPSENEHYTHRIGRTGRAKKEGVSYLFYVPEEKKRVQE 354

Query: 360 IEKLIE 365
           + +L  
Sbjct: 355 LLRLTR 360


>gi|194864582|ref|XP_001971010.1| GG14669 [Drosophila erecta]
 gi|190652793|gb|EDV50036.1| GG14669 [Drosophila erecta]
          Length = 827

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 122/431 (28%), Positives = 218/431 (50%), Gaps = 3/431 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   GY  PTPIQ KTIPL+L+  DV  +A+TG+GKTA F++P+   
Sbjct: 41  FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++        R LIL PTRELA Q     ++ G+   L   L++GG   ++Q   +   
Sbjct: 101 LQRREPTKGA-RALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTC 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR L       L +N+IE +V DEADR+ +MGF   +      +P +RQT++
Sbjct: 160 PDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQTVM 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L +P  I ++  S   + +            +  AL+  L    
Sbjct: 220 FSATLPKLLVEFARAGLNDPVLIRLDVESKLPDAL-ALKFLYCRPDDRYTALVVLLKYVI 278

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   + +V  + + L + G S  +++ ++D  +R    + F    + +++ +
Sbjct: 279 PVQSQTVVFAGTQHHVELISYILTEAGISNSSVYSSLDPAARKINTAKFVNKKVSVLIVT 338

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP +  V N   P + + ++HR+GR  RAGR G A+++V+ +D  H+  +  
Sbjct: 339 DVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLLDLHL 398

Query: 363 LIEKKVDWL-NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
            + +  +   N  L ++   L + +       +K++ I       +   K Y S +    
Sbjct: 399 FLNRPFNIHDNSALGTIPQDLLEEEHLTVTDIKKSHHIAGVLRTSENAYKKYLSSRPVAS 458

Query: 422 LKESEKISKLQ 432
              + ++ K++
Sbjct: 459 TDANARVKKIK 469


>gi|301166278|emb|CBW25853.1| putative ATP-dependent RNA helicase [Bacteriovorax marinus SJ]
          Length = 654

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 126/372 (33%), Positives = 202/372 (54%), Gaps = 4/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L P+++ A+   G+ + + IQ  TI  +L++ D+  +A+TG+GKT SF +P++ 
Sbjct: 6   EFVEYNLQPELIKALNSHGFKEASEIQDLTIKPILEKKDIFALAETGSGKTGSFAIPIME 65

Query: 62  IL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL E+        + +IL PTRELA Q    FE+ G    +  + +IGG   E Q ++L+
Sbjct: 66  ILLEEKALDNPSQQIVILSPTRELAQQTNKFFEQVGAELGIKSSCIIGGEKIEKQIEELK 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  VL+ TPGR+ D   + ++ + N   +V DEADR+ DMGF   I+ I + +P TRQ 
Sbjct: 126 EGVHVLVATPGRLNDLTKQKEIDLANCLAVVFDEADRLFDMGFKKDIEFILNGIPKTRQL 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT   ++   +  F   P  I++N  S   + I+H              + Q    
Sbjct: 186 IMVSATTNMDVLNTAFKFGSQPLEIKLNEESILVDNIDHKIAMIDKNEKMPLLVKQLQTH 245

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIFCN +     +   L+K  F    I G + Q  R +++  F+     ++V
Sbjct: 246 EDAY---AIIFCNTQFQTHLVAEWLKKMNFKAKPISGRMPQNKRTRLMEEFRSKETTILV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARGLDI DV  V NFD+PN A +Y+HRIGRTGRAG+ G+A +  + ED +++D I
Sbjct: 303 CTDVAARGLDIKDVNLVINFDLPNEAASYVHRIGRTGRAGKDGQAISFCSFEDCENLDPI 362

Query: 361 EKLIEKKVDWLN 372
            + I   +  ++
Sbjct: 363 SEFIGGSIPKMD 374


>gi|270000966|gb|EEZ97413.1| hypothetical protein TcasGA2_TC011242 [Tribolium castaneum]
          Length = 761

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 122/366 (33%), Positives = 206/366 (56%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V+  +   GY +PTPIQ KTIPLVL+  DV  +A+TG+GKTA F++PM   
Sbjct: 35  FQCMGLSYNVLKGITKRGYQQPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMFEK 94

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ G+   L  A+++GG   + Q   +   
Sbjct: 95  LKIRSAKAGA-RALILSPTRELALQTLKFIKELGRFTGLKSAVILGGDSMDDQFSAIHGN 153

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR L      +L +N++E +V DEADR+ +MG    +  I + +P  RQT+L
Sbjct: 154 PDIIVATPGRFLHVCIEMELKLNSVEYVVFDEADRLFEMGLGEQLTEIVNRLPDARQTVL 213

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + ++  L +P  + ++  S   E +   +        +  ALL  L    
Sbjct: 214 FSATLPKVLVEFAKAGLNDPVLLRLDVESKIPEEL-QLWYIIVRPEERLAALLVLLKTHI 272

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D  +  ++F   + +V  +   L++ G S   I+ N+D  +R    + F  G ++++V +
Sbjct: 273 DNKQQTVVFAATRHHVEYIHMILDRVGVSNTYIYSNLDPSARKINAAKFSTGKVKVLVVT 332

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP + +V N++ P +++ ++HR+GR  RAGR G A++LV  ++  ++  +  
Sbjct: 333 DVAARGIDIPQLDNVINYNFPAKSKLFVHRVGRCARAGRSGTAYSLVTPDEYPYLLDLHL 392

Query: 363 LIEKKV 368
            + + +
Sbjct: 393 FLGRPL 398


>gi|78485292|ref|YP_391217.1| ATP-dependent RNA helicase DbpA [Thiomicrospira crunogena XCL-2]
 gi|78363578|gb|ABB41543.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
          Length = 468

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 143/445 (32%), Positives = 235/445 (52%), Gaps = 20/445 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL P ++  +    Y   T IQ +++P +L+  DV    +TG+GKTA+F L +L  
Sbjct: 12  FSTLGLHPDLLSNLKTLDYHFLTDIQAQSLPPILEGKDVIAQGKTGSGKTAAFGLGVLQK 71

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+     V+    L+L PTRELA QVA+   +  +       L +  G+P   Q   L++
Sbjct: 72  LDVKNFNVQ---ALVLCPTRELADQVANEIRRLARQLQNIKVLTLCGGMPMGPQISSLQQ 128

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI DH  + +L +  ++ILV+DEADRML+MGF P +  I   +P  RQTL
Sbjct: 129 GAHIVVGTPGRIEDHLKKARLTLAEVKILVLDEADRMLEMGFQPSLDTIIDQLPQQRQTL 188

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   +++ +S+  +  P R+EV +     +             +++     +L+  
Sbjct: 189 LFSATFPKQIEHISQRIMHQPVRVEVAS---RHDDSTITQHFYQVDSTEQRLQALRLVLL 245

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ ++FCN KK V  +  +L   GFS  A+HG+++QR R + L  F   +I ++VA
Sbjct: 246 QAKPESSVVFCNTKKEVQMVADTLRDAGFSALALHGDLEQRDRDQTLIQFANKSISILVA 305

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V NF + +  E ++HRIGRTGRAG  G A + ++ ++   +  + 
Sbjct: 306 TDVAARGLDIEALDAVVNFHLAHDPEVHVHRIGRTGRAGSQGVACSFISDKESYKVATLA 365

Query: 362 KLIEKKVDWLNGDLSSL--NPPLE-KIDIAQHNHARKNNPIPQKSTGF----------DR 408
           + + + +       +SL   PPL+ K+     +  +KN   P    G             
Sbjct: 366 EYLGQDIQTEPLPDASLLNQPPLQAKMVTLLIDGGKKNKLRPGDILGALTANDVLNAGQV 425

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQ 433
            K   + +KS++ +  S     L+Q
Sbjct: 426 GKIKITDKKSYVAVTRSMFKQALKQ 450


>gi|17545341|ref|NP_518743.1| ATP-dependent RNA helicase DbpA [Ralstonia solanacearum GMI1000]
 gi|17427633|emb|CAD14152.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
           GMI1000]
          Length = 465

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 144/402 (35%), Positives = 205/402 (50%), Gaps = 11/402 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P V+  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 10  FSTLALAPAVLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + ++L PTRELA QVA    +  +       L +  G P   Q   LE 
Sbjct: 70  LDT---RRFDVQAMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH  RG L +  ++ LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 127 GAHVVVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPPERQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K      +   R                    Y     +      LL  
Sbjct: 187 LFSATYPDGIAK----LSRQILRNPKEVKLEERHDDSKIRQRFYEVTDDERLHAVGLLLK 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FCN K+   NL   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 243 HYRPVSTLAFCNTKQQCRNLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  +  IE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGGIE 362

Query: 362 KLIEKKVDWL---NGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           + + ++V+W      D SS  P L  ++  Q    RK+   P
Sbjct: 363 QALGREVEWHRLAELDASSDAPLLPPMETLQILGGRKDKIRP 404


>gi|268323389|emb|CBH36977.1| probable ATP-dependent RNA helicase [uncultured archaeon]
          Length = 392

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 138/395 (34%), Positives = 215/395 (54%), Gaps = 15/395 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+   ++ ++ + G+ +PT IQ K+I L+L   DV   A TG+GKT +F   ++ 
Sbjct: 3   SFKELGIIEPILKSIEEEGFERPTEIQEKSISLILSGKDVIAEAATGSGKTLAFAADIIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             EKG       RTL+L PTRELA QVA     + K   L +  + GG+    Q  +L R
Sbjct: 63  KTEKG----TGIRTLVLTPTRELAQQVAAALSLFSKYKPLRIVAVFGGVSINPQITQL-R 117

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            ADV++ TPGRILDH  R  L ++ + ILV+DEADRMLDMGFIP ++ I    P  RQTL
Sbjct: 118 RADVVVGTPGRILDHIGRRTLNLSKVNILVLDEADRMLDMGFIPDVKKIVGECPRNRQTL 177

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT++ E+  ++  + ++P  +        ++         Y         L   L  
Sbjct: 178 LFSATISREITVLARKYQKDPISVSAEAYVDPSKL----TQLYYDVPDNLKFSLLVHLLK 233

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  ++FCN + N   +  +L+  G    AIHG + Q  R +++  F    ++++V 
Sbjct: 234 HEESELVMVFCNTRTNTDFVASNLKALGIGAMAIHGGLTQDKRDRVMKQFHSHDVRVLVC 293

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP V H++N+D+P   ++YIHRIGRT RAG+ G A  ++A  D      + 
Sbjct: 294 TDVAARGLDIPHVSHIYNYDIPMYGKDYIHRIGRTARAGKDGVAINILASRDYDSFRRVM 353

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
           K  E  +           P ++K+ I++ N  +++
Sbjct: 354 KSNEVTITE------EKLPDVKKVRISRKNSPKRS 382


>gi|119505818|ref|ZP_01627884.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080]
 gi|119458316|gb|EAW39425.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080]
          Length = 409

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 129/389 (33%), Positives = 198/389 (50%), Gaps = 13/389 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F DL L   ++  V + G+   +PIQ K +P  LQ HD  G AQTGTGKTA+F++ +   
Sbjct: 29  FHDLDLQDSLLRGVAELGFQYCSPIQAKILPHTLQGHDAIGKAQTGTGKTAAFLITIFND 88

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 +G   +  PR +I+ PTREL  Q+A + E  GK   L    +IGG  ++ Q  K
Sbjct: 89  LLCNPPEGERYLAEPRAVIIAPTRELVMQIAADAEDLGKFTGLQTVTMIGGADYQKQLAK 148

Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           ++ R  D+++ TPGR++D   R  L ++ +E LV+DEADRMLDMGFIP ++ I    P  
Sbjct: 149 VQSRVVDLVVATPGRLIDFMQRRDLFLDRVETLVLDEADRMLDMGFIPQVKRIVRATPRK 208

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
                   + T   Q +     Q                        Y   S +   +  
Sbjct: 209 EDRQTLLFSAT-FTQDILNLAQQWTFDPVTVEIEPERVATATVDQRVYLVTSHERLKVLL 267

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +       + I+F N++  V +L   L K G S   + G I Q  R K L++FK G I 
Sbjct: 268 KVLRGPDAVSTIVFANRRDQVRSLHEKLRKAGISCGILSGEITQARRTKTLADFKSGKIA 327

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A RG+ +  V HV N+++P   E+Y+HRIGRTGRAG  G + +  +++D   +
Sbjct: 328 VLVATDVAGRGIHVDGVSHVVNYNLPEDPEDYVHRIGRTGRAGATGISISFASEDDAFLL 387

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
             IE L+ ++       L  ++PP + +D
Sbjct: 388 PDIETLLGER-------LKCVSPPADLLD 409


>gi|15672392|ref|NP_266566.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723284|gb|AAK04508.1|AE006277_8 ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326405986|gb|ADZ63057.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis
           subsp. lactis CV56]
          Length = 446

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 134/455 (29%), Positives = 212/455 (46%), Gaps = 19/455 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +   + +  + KPT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVAD-NFEKYGKNYNLTVALLIGGIPFEAQNKK- 118
             ++     V+     I  P+RELA Q+     E    N  L V+  +GG     Q KK 
Sbjct: 61  QKIDTDLDEVQAV---ITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKL 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 V+I TPGRI D      L+++     V+DEAD  LDMGF+  +  I S      
Sbjct: 118 ESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRV 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+  +LQ   + +L NP   ++   +  ++TIE+  V+T      +  L    
Sbjct: 178 QMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTK 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +       +IF N K  V ++ H L   G  V  IHG++  R R +I+++ K    Q 
Sbjct: 238 ATNPYM---AMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQY 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  V H+ N ++P     ++HR+GR+GR G  G A TL +  D   I 
Sbjct: 295 VVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIR 354

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY--SSQ 416
            IEK+    V +    +             +    +K + I  K+ G  ++ K +     
Sbjct: 355 EIEKM---GVTFQPKAIKDGEIVDSYDRDRREKRTKKQDEISTKTIGALKKGKKHVKPGY 411

Query: 417 KSHIPL------KESEKISKLQQDIQENDADSLGF 445
           K  I        K+  +  + +   +  D+    F
Sbjct: 412 KRAIKWQIEEDNKKKRRAERNKNARKTRDSRKQSF 446


>gi|67423403|dbj|BAD99522.1| VASA RNA helicase [Daphnia magna]
          Length = 775

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 108/358 (30%), Positives = 180/358 (50%), Gaps = 7/358 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + GL P ++  + ++GY+KPTP+Q  +I ++L + D+   A TG+GKTA++++P++ 
Sbjct: 344 SFEEAGLRPLLLQNIKNSGYIKPTPVQKASIAVILAKRDLIACAVTGSGKTAAYLVPVMN 403

Query: 62  ILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           IL +          ++ P  +I+ PTRELA Q+     K+  N  L   ++ GG     Q
Sbjct: 404 ILLEQGVAGASHGMLQKPEVVIVAPTRELAIQIHREACKFSYNSVLKSVIIYGGTVVNHQ 463

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G ++L+ T GR+ D  +RG      ++ L++DEADRMLDMGF P I+ + +   
Sbjct: 464 RSNLQAGCNILVATAGRLKDFLDRGIFDFTAVKFLILDEADRMLDMGFGPDIEKMVNHPT 523

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              + +      +       +          +   +             + Q SK+    
Sbjct: 524 MPPKGIRRVCMFSATFPDEVQALAATYMEDYIFVTTGIVGGTNPDVEQLFFQCSKRDKRT 583

Query: 236 QQLLQSQDTMK-NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + +   QD      I+F + KK    +   L        +IHG+  Q  R + L +FK G
Sbjct: 584 KLMEVLQDLGDAKTIVFVDSKKTADFVAAFLCNNNLQSTSIHGDRLQSQREQALRDFKNG 643

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
              ++VA+++AARGLDI  V +V N+D+P   E Y+HR+GRTGR G  GK+ +   +E
Sbjct: 644 VRNILVATNVAARGLDIAGVNYVVNYDLPTDIEEYVHRVGRTGRVGNIGKSISFFDEE 701


>gi|330906893|ref|XP_003295639.1| hypothetical protein PTT_01995 [Pyrenophora teres f. teres 0-1]
 gi|311332936|gb|EFQ96278.1| hypothetical protein PTT_01995 [Pyrenophora teres f. teres 0-1]
          Length = 438

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 155/377 (41%), Gaps = 7/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  ++V A+ D G+  P+ +Q  TIP  +  +DV   A++G GKTA FVL  L  
Sbjct: 54  FRDFLLKDELVRAITDCGFEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQ 113

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN----KK 118
           +++          ++            +         ++ V +  GG P +        K
Sbjct: 114 MDEKPEPGAATILVMCHTRELAYQIRNEYNRFAKFLPDVRVGVFYGGTPVQKDIELLSNK 173

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 ++           +R   L N    ++ +    +        +Q I    P  +
Sbjct: 174 DTHPHIIVGTPGRINALVRDRHLRLANLKHFVLDECDKMLDQPDMRNDVQAIFRATPQHK 233

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT+  +++ V + F+QNP  I V+            +     +  K        
Sbjct: 234 QVMMFSATLNKDVRVVCKKFMQNPLEIYVDDEKKLTLHGLQQYYMKLDEKEKNR--KLND 291

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L         IIF         L   L +  F   A+H  I Q  R+K    FKE   ++
Sbjct: 292 LLDSLEFNQVIIFVRSTLRCSELDKLLRECNFPSTAVHSGISQEERIKRYKEFKEFQTRI 351

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHI 357
            V++D+  RG+D+  +    N+D+P++A+ Y+HR+GR GR G  G + + V + +D   +
Sbjct: 352 CVSTDIFGRGIDVERINVAINYDMPDKADAYLHRVGRAGRFGTKGLSISFVSSPDDEAVL 411

Query: 358 DAIEKLIEKKVDWLNGD 374
            +IE+  + ++     +
Sbjct: 412 KSIEERFQVELPEFPEN 428


>gi|296178353|dbj|BAJ07808.1| putative vasa protein [Oxycomanthus japonicus]
          Length = 851

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 130/388 (33%), Positives = 203/388 (52%), Gaps = 13/388 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  L+  V   V+ A Y KPTP+Q   IP++    D+   AQTG+GKTA+F+LP+++
Sbjct: 415 SFDECNLNETVRNNVMKAKYEKPTPVQKHGIPIIAAGRDLMACAQTGSGKTAAFLLPIIS 474

Query: 62  ILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            + +   +      V+ P+ +I+ PTRELA Q+ +   K+  N  L   ++ GG   + Q
Sbjct: 475 GILRDGVQSGSLSFVQTPQCIIVSPTRELAIQIFNEARKFSHNTILRPVVIYGGTSVQYQ 534

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              + +G  +L+ TPGR+ D  +R K+ +     LV+DEADRMLDMGF P ++ + +   
Sbjct: 535 TNDVGKGCHILVGTPGRLQDFIDRQKISVEKCNYLVLDEADRMLDMGFGPAMERLVNNPN 594

Query: 176 FT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTL+FSAT  DE+QK +  +L N   + +         +E   +       K 
Sbjct: 595 MPKKGDRQTLMFSATFPDEVQKRASEYLNNYLFLTIGRIGGATPDVEQRVIEVDQFQKK- 653

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L ++L         ++F   K++   L   L + GF   +IHG+  Q+ R + L +F
Sbjct: 654 -DKLIEILHDSPEDDKTLVFVETKRSADFLASLLSQSGFPTTSIHGDRMQKEREEALRDF 712

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-A 350
           K G   +MVA+ +AARGLDIP V HV N+D+P     Y+HRIGRTGR G  GKA +   +
Sbjct: 713 KTGRAPVMVATSVAARGLDIPKVKHVINYDLPEDISEYVHRIGRTGRVGNLGKATSFFDS 772

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            ++     A+ K +      +   L  +
Sbjct: 773 SKNGNVARALIKTLADAQQEVPDFLEGV 800


>gi|221130645|ref|XP_002155556.1| PREDICTED: similar to topoisomerase (DNA) III beta [Hydra
           magnipapillata]
          Length = 1349

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 132/405 (32%), Positives = 222/405 (54%), Gaps = 15/405 (3%)

Query: 3   FADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F D  GL+P  + A+ ++GY  PTPIQ +T P+ +   DV  IA+TG+GKT +F+LP   
Sbjct: 109 FEDFRGLNPAQLKALYNSGYKAPTPIQAQTWPIAMFDRDVVSIAKTGSGKTLAFLLPAYM 168

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +   R++      L+L PTRELA Q+    EK+G       A   GG P   Q + +  
Sbjct: 169 KINLRRSQGT-ISVLVLAPTRELATQIQLEAEKFGSVAGYYSACAYGGAPKRNQLQAINS 227

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  VL+ TPGR+ D     ++ ++++  LV+DEADRMLDMGF P I+ I   +P  RQTL
Sbjct: 228 GISVLVATPGRLNDFLESNEVNLSSVFYLVLDEADRMLDMGFEPQIRTIIRCLPRKRQTL 287

Query: 182 LFSATMTDELQKVSENFLQNPKRIE-------VNTPSSTAETIEHCFVATYAQYSKKCAL 234
           +FSAT  +E+++++++FL  P  I         ++     E I+   +   +   K   L
Sbjct: 288 MFSATWPEEVRRLADDFLYQPVHIRLGIVGGSTSSGLQANEMIKQHLILLNSGEDKDGEL 347

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA-IHGNIDQRSRMKILSNFKE 293
           +  +       ++ ++    +KN  +   ++  +     + +HG+ DQ+ R K L+ F++
Sbjct: 348 INLIKSRFHQNRDLVLIFVARKNTCDFLTNILNRVGIAASAMHGDRDQKYREKTLAAFRD 407

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-- 351
           G+  +MVA+DLA+RG+D+  +  V N+D+ N  E+Y+HRIGRTGRAG  G++FT + +  
Sbjct: 408 GSRPIMVATDLASRGIDVRGISAVINYDLANSTEDYVHRIGRTGRAGMSGESFTFLTRSN 467

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
           +DI     I +++ K   +    +  L   + ++ + Q  +  + 
Sbjct: 468 DDIWKAIGIVEVMAKTGQYPPPAVQEL---INRVKMRQEQNKERR 509


>gi|312883442|ref|ZP_07743168.1| ATP-dependent RNA helicase DbpA [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369058|gb|EFP96584.1| ATP-dependent RNA helicase DbpA [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 458

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 137/420 (32%), Positives = 219/420 (52%), Gaps = 12/420 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L+  ++  +   G+ + T IQ + +P +L+  DV G  +TG+GKT +F L +L 
Sbjct: 4   SFNTLNLASDLLVTLDSLGFSQMTAIQQQALPAILEGKDVIGQGKTGSGKTVTFSLGILN 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R R++   TL+L PTRELA QVA       +  +    L +  G+P   Q   LE
Sbjct: 64  NLNVERFRIQ---TLVLCPTRELADQVAKEIRTLARGRHNVKVLTLCGGMPMGPQIGSLE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRILDH ++G++  ++I   V+DEADRMLDMGF   I  + S +P  RQT
Sbjct: 121 HGAHIIVGTPGRILDHMSKGRIQFSDINTFVLDEADRMLDMGFEDAIDTLVSELPINRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    ++ ++E      + I+  T     E             ++      + L 
Sbjct: 181 LLFSATYPKHIEVLAEKVTSEAQMIKTQT---HDEKTTIKQFFYEVDGTEAKDDALETLL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++FCN KK V ++   L++ GF+V  +HG+++QR R + L  F   +  ++V
Sbjct: 238 LHYKPESSVVFCNTKKEVQDVSDELDRLGFNVAELHGDMEQRERERALITFANKSTSILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+     +   +  I
Sbjct: 298 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGAEGLAFSFFTARESYRVARI 357

Query: 361 EKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           E+ ++  ++ L   L       P   K+   Q    +K         G   ++ N ++ K
Sbjct: 358 EEYMD--IECLPSQLPQKLIERPFYPKMATIQILGGKKQKVRAGDILGALTKQANIAASK 415


>gi|296237741|ref|XP_002763877.1| PREDICTED: ATP-dependent RNA helicase DDX3Y-like [Callithrix
           jacchus]
          Length = 647

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 134/428 (31%), Positives = 219/428 (51%), Gaps = 30/428 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D+ +   ++  +    Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+
Sbjct: 168 NFSDIDMGEIILGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILS 227

Query: 62  ILE---------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
            +                +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 228 QIYTDGPGEALKAVKGNGRCGRRKQYPVSLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 287

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEAD+MLDMGF P 
Sbjct: 288 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIALDFCKYLVLDEADKMLDMGFEPQ 347

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    +
Sbjct: 348 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVI 407

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +       +L +       ++F   KK   +L   L  +G +  +IHG+  QR
Sbjct: 408 WVEDLDKRSFL--LDILGATGRDSLTLVFVETKKGADSLEDFLYHEGHACTSIHGDRSQR 465

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 466 DREEALRQFRSGRSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNL 525

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           G A +   ++++     +  L+ +    +   L S+          +H++   N    ++
Sbjct: 526 GLATSFFNEKNVNIAKDLLDLLVEAKQEVPSWLESM--------AYEHHYKGGNRGRSKR 577

Query: 403 -STGFDRR 409
            S GF  R
Sbjct: 578 FSRGFGAR 585


>gi|219880759|gb|ACL51654.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Callithrix
           jacchus]
          Length = 654

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 134/428 (31%), Positives = 219/428 (51%), Gaps = 30/428 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D+ +   ++  +    Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+
Sbjct: 175 NFSDIDMGEIILGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILS 234

Query: 62  ILE---------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
            +                +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 235 QIYTDGPGEALKAVKGNGRCGRRKQYPVSLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 294

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEAD+MLDMGF P 
Sbjct: 295 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIALDFCKYLVLDEADKMLDMGFEPQ 354

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    +
Sbjct: 355 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVI 414

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +       +L +       ++F   KK   +L   L  +G +  +IHG+  QR
Sbjct: 415 WVEDLDKRSFL--LDILGATGRDSLTLVFVETKKGADSLEDFLYHEGHACTSIHGDRSQR 472

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 473 DREEALRQFRSGRSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNL 532

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           G A +   ++++     +  L+ +    +   L S+          +H++   N    ++
Sbjct: 533 GLATSFFNEKNVNIAKDLLDLLVEAKQEVPSWLESM--------AYEHHYKGGNRGRSKR 584

Query: 403 -STGFDRR 409
            S GF  R
Sbjct: 585 FSRGFGAR 592


>gi|209545470|ref|YP_002277699.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533147|gb|ACI53084.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 390

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 139/377 (36%), Positives = 203/377 (53%), Gaps = 9/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL P++V  V  AGY  P+PIQ   IP +    DV  +A+TGTGKTA+F LP++  
Sbjct: 16  FDTLGLDPRIVANVARAGYATPSPIQALAIPPIRDGRDVEALARTGTGKTAAFALPVIHR 75

Query: 63  LEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           L  G             R LIL PTRELA+Q A       +   LTVAL IGG P + Q 
Sbjct: 76  LLTGAGGAAPSGPPGAVRALILSPTRELASQTAGTVRTCIRGCGLTVALAIGGAPKDRQA 135

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  G D+L+ TPGR+LDH     + +++   LV+DEADRMLD+GF+  ++ I + +P 
Sbjct: 136 RALLDGVDILVATPGRLLDHLADATITLDHTTCLVLDEADRMLDLGFVEDVRAIAARLPV 195

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             QTLLFSATM+  +  +    L  P +I     ++    I    + T A      A   
Sbjct: 196 RHQTLLFSATMSPAISALGRQLLHKPLQIAPPEQAAPPPRIRQQVIFTPAARK---AASL 252

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             +  ++     ++F   K+    L  +L   G +  A+HG+  Q  R + L +F+ G +
Sbjct: 253 LAVLRREAGGRTMVFTRTKQAADALARTLNTGGVTAAALHGDHGQVRRDRTLDDFRRGRL 312

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+ ARG+D+ DV  V NFD+P + E YIHRIGRT RAGR G A +L    +   
Sbjct: 313 LVLVATDVMARGIDVEDVALVVNFDIPEQPETYIHRIGRTARAGRRGTALSLCDPAERLK 372

Query: 357 IDAIEKLIEKKVDWLNG 373
           +  IE+    ++  ++ 
Sbjct: 373 LRDIERQSGARITVIDP 389


>gi|190702284|gb|ACE75181.1| ATP-dependent RNA helicase [Glyptapanteles flavicoxis]
          Length = 796

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 134/436 (30%), Positives = 218/436 (50%), Gaps = 40/436 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + G   +++  +   GY   TPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L 
Sbjct: 369 SWKESGFPKEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLL 428

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +E+     + P ++IL PTRELA Q+ +   K+G+   +   +++GG+  E Q
Sbjct: 429 WITSLPKIERLEEADQGPYSIILAPTRELAQQIEEETNKFGQPLGIRTVVVVGGLSREEQ 488

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 489 GFRLRMGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 548

Query: 176 -------------------------FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
                                      RQT++F+ATM   +++++  +L+ P  + + + 
Sbjct: 549 VTNLKPDNEDAENEEKLLANYNTKKKYRQTVMFTATMPPAVERLARTYLRRPAMVYIGSV 608

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               E  E           ++  +       +  +   IIF NQKK    L   LEK GF
Sbjct: 609 GKPTERTEQIVHIMGEADKRRKLMEILHRGVEPPV---IIFVNQKKGADVLARGLEKIGF 665

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           + C +HG   Q  R   L++ K G+  ++VA+D+A RG+DI DV  V N+D+    E+Y 
Sbjct: 666 NACTLHGGKGQEQREYALASLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYT 725

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A +   K+D      +++ I      L   +S+  P L     AQH
Sbjct: 726 HRIGRTGRAGKAGLAISFCTKDDSHLFYDLKQTI------LGSPISTCPPELLNHPEAQH 779

Query: 391 NHARKNNPIPQKSTGF 406
                     ++   F
Sbjct: 780 KPGTVVTKKRREEKIF 795


>gi|6682259|gb|AAF23311.1|AC016661_36 putative RNA helicase [Arabidopsis thaliana]
          Length = 545

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 98/420 (23%), Positives = 183/420 (43%), Gaps = 17/420 (4%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            FA+L    G    ++  + + G+ +PTPIQ + IP++L   +    A TG+GKT +F+ 
Sbjct: 138 SFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFIC 197

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           PML  L+    R        +  +           E           + +   P      
Sbjct: 198 PMLIKLKVLNCRPSTDGIRAVILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLVKTAD 257

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             +   DVLI TP R+       K+ ++ +E LV+DE+D++ +   +  I  +       
Sbjct: 258 FSKLWCDVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNP 317

Query: 178 RQTLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
                 FSAT+ D +++++ + + +  R+ +   ++ +ET++   V   ++  K  A   
Sbjct: 318 SIIRSLFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLA--L 375

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +   ++      +IF   K+    L   L+ +      IH ++    R   +  F+ G  
Sbjct: 376 RQSFAESLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEK 435

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+ ARG+D   +  V N+D P+ A  YIHRIGR+GRAGR G+A T   ++D+  
Sbjct: 436 WVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPF 495

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  I   +      +   + SL          +    RK+ P     +   +  KN + +
Sbjct: 496 LRNIANTMMSSGCEVPSWIMSL----------KKKKWRKHRPRRDSISTKPKADKNDTDE 545


>gi|294665093|ref|ZP_06730397.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292605135|gb|EFF48482.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 570

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 125/422 (29%), Positives = 215/422 (50%), Gaps = 6/422 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L P ++  +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++
Sbjct: 9   VTFSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVM 68

Query: 61  T----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                       +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q 
Sbjct: 69  NRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQR 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIE-ILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L++G DV+I TPGR++D+  + K++  +   I V+DEADRM D+GFI  I+ +   +P
Sbjct: 129 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                     + T   + +   +    +  ++   + +  T        Y    ++   L
Sbjct: 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESI-TAARVRQRIYFPSDEEKQTL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L S+      ++F N K  V  +  +LE+ G+ V  + G++ Q+ R  +L+ F++G 
Sbjct: 248 LLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +  IE  IE+K+         L P      +         +      T F   ++  ++
Sbjct: 368 SLPDIEAYIEQKIPVEPVTSELLTPLPRAPRVPVVGEEADEDAGDSVGTIFREAREQRAA 427

Query: 416 QK 417
           ++
Sbjct: 428 EE 429


>gi|164658139|ref|XP_001730195.1| hypothetical protein MGL_2577 [Malassezia globosa CBS 7966]
 gi|159104090|gb|EDP42981.1| hypothetical protein MGL_2577 [Malassezia globosa CBS 7966]
          Length = 480

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 107/401 (26%), Positives = 190/401 (47%), Gaps = 19/401 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F DLGL   ++  +    Y KP+ IQ + +PL+LQ    ++ G +Q+GTGKTA+FVL M
Sbjct: 88  SFDDLGLHADLLKGIYAMKYTKPSKIQERALPLLLQNPPRNMIGQSQSGTGKTAAFVLTM 147

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++    +   P+ L L P+RELA Q+ D  ++ GK   +  A  I   P   +  + 
Sbjct: 148 LSRIDFSVDK---PQALALAPSRELARQIMDVVQEMGKYTPVKTAFAI---PDAMKRGEK 201

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   V+            R          ++ +  + +   G       + + +P T Q
Sbjct: 202 VQAHLVVGTPGKTFDLIKTRALDPSGVKVFVLDEADNMLDQQGLGEQSIRVKNTMPKTCQ 261

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT  + ++  +  F  N   I +     + E+I   ++    +  K   L++   
Sbjct: 262 LVLFSATFPEHVRTFAVKFAPNANEIRLKQEELSVESIRQFYMDCKTEEHKYEVLVEL-- 319

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +  T+   IIFC ++     +   +  +G  V ++HG +D  +R + +  F+ G  +++
Sbjct: 320 YNLLTIGQSIIFCAKRDTADKIAQRMTAEGHRVDSLHGKLDTAARDRTIDEFRSGKCKVL 379

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +A+++ ARG+DI  V  V N+D+P        AE Y+HRIGRTGR GR G +   V  + 
Sbjct: 380 IATNVIARGIDIQQVTLVINYDMPLTQQGDPDAETYLHRIGRTGRFGRKGVSINFVHDDT 439

Query: 354 -IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
             + +++IE+ +   +  +  D   L      I  A  +HA
Sbjct: 440 SRRQMESIERALHCHIVPVQTD--DLEAMESTIKEALKSHA 478


>gi|146308580|ref|YP_001189045.1| ATP-dependent RNA helicase RhlB [Pseudomonas mendocina ymp]
 gi|145576781|gb|ABP86313.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 482

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 211/380 (55%), Gaps = 11/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++T 
Sbjct: 96  FHDFKLAPELMHAIHDLGFPYCTPIQAGVLGYTLKGQDAIGRAQTGTGKTAAFLISIITQ 155

Query: 63  ----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K   L V   +GG+ F+ Q K+
Sbjct: 156 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAVALTKYTKLNVMSFVGGMDFDKQLKQ 215

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 216 LESRFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPMK 275

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                  FSAT T+++  +++ +  NP  +E+   +  ++T+E    A  +    K    
Sbjct: 276 GDRQTLLFSATFTEDVMNLAKQWTVNPAIVEIEPENVASDTVEQHVYAVASSDKYKLLYN 335

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                +Q+     ++F N+K  V  +   L + G S   + G++ Q  R+K+L  F+ G 
Sbjct: 336 L---VTQNAWDRVMVFANRKDEVRRIEERLTRDGVSAAQMSGDVPQHKRIKVLEGFRAGH 392

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ +  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 393 IRVLVATDVAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGSSGTSISFAGEDDAF 452

Query: 356 HIDAIEKLIEKKVD-WLNGD 374
            +  IE LI +K+   +  D
Sbjct: 453 ALPPIEALIGRKIQCEMPPD 472


>gi|325283382|ref|YP_004255923.1| DEAD/DEAH box helicase domain-containing protein [Deinococcus
           proteolyticus MRP]
 gi|324315191|gb|ADY26306.1| DEAD/DEAH box helicase domain protein [Deinococcus proteolyticus
           MRP]
          Length = 612

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 138/390 (35%), Positives = 217/390 (55%), Gaps = 10/390 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +L ++P +   + + G  + +PIQ +++P  LQ  D+ G A+TGTGKT +F LP++
Sbjct: 1   MNFNEL-IAPALAARLAERGITEASPIQAESLPHTLQGRDLIGRARTGTGKTLAFALPII 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE  R R R+PR +++ PTRELA QVA  FE+ G+    TV  + GG  +  Q   L 
Sbjct: 60  QGLEPSRERSRLPRAIVVAPTRELARQVAAEFEQTGREL--TVLTVYGGAAYGPQETALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR++DH  RG L +  ++  V+DEAD ML +GF   I+ I    P  RQT
Sbjct: 118 RGVDVVVGTPGRLIDHLERGNLDLQEVKYAVLDEADEMLSVGFADAIETILKTTPEGRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+T E++++S  +L +P  +++     +        +      S+    +   L 
Sbjct: 178 LLFSATLTPEIRRLSNKYLNDPLVVDMVGEGKSQAAQTVEHLKVRVGRSRTR--VLADLL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +    +  I+F   K+    L   L  +GF   A+HG++ Q  R + L +F+ G   ++V
Sbjct: 236 TVYNPEKAIVFTRTKRETDELALELIHRGFEAEALHGDLAQNQRERALGSFRSGRTSILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP+V  V  + +P   E+Y+HR GRTGRAGR G A  +    + + I+ +
Sbjct: 296 ATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRAGTAIIMYGDREQRDINGL 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           E++   +          L  P E  + + H
Sbjct: 356 ERVTGVRFTERP-----LPTPREVQEASAH 380


>gi|145481669|ref|XP_001426857.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393934|emb|CAK59459.1| unnamed protein product [Paramecium tetraurelia]
          Length = 542

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 144/453 (31%), Positives = 237/453 (52%), Gaps = 15/453 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  L L+  +V A  + GY  PT IQ + +PLVL   DV   + TG+GKTA+F+LP++ 
Sbjct: 92  DFQQLKLNKSLVKACHEQGYKYPTKIQAQIVPLVLAGKDVLASSCTGSGKTAAFLLPLMQ 151

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                +++    + LI+ PTRELA Q  + F+K  +  + T AL+IG +P + Q  +L R
Sbjct: 152 RFGNTKSQKYS-KALIVMPTRELALQCFEMFQKLNQFSHCTAALVIGAVPIQQQEAELRR 210

Query: 122 GADVLICTP-GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TP   +    N   + +++IE+LV+DEADR+++MGF   I+ I    P  RQT
Sbjct: 211 YPDIIIATPGRIVDIMKNSFSIDLSSIEVLVLDEADRLMEMGFEAEIKEILQQTPRDRQT 270

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SAT+   ++++S   L  P ++ V+     A  ++   +   +   K        L 
Sbjct: 271 VLVSATLKATVKQLSLLALHKPVKVSVDYVDGLAYGLKQYILRIDSDEEKDREATLIALL 330

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  ++  IIF   K +   L   L  +  S C +HGN+ Q+ R++   +FKEG  Q ++
Sbjct: 331 QQKFIEKTIIFVRTKHDCHRLQILLGLKNLSSCELHGNLTQQQRIQAYEDFKEGKFQYLL 390

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARGLDI +V  V NF++P     YIHR+GRT R G  G + T+  K+++     +
Sbjct: 391 ATDLAARGLDIANVKAVINFEIPYETSRYIHRVGRTARIGNQGVSVTICLKKEVSQFKQM 450

Query: 361 EKLIEKK----------VDWLNGDLSSLNPPLEKIDIAQ--HNHARKNNPIPQKSTGFDR 408
            K  ++K          ++ +  DL SL P ++KI   +       +   + Q++    +
Sbjct: 451 IKESKQKLFKLNFNIESIEEIKSDLKSLEPKIKKIIKGEVFEKEIHQTEILAQRAQNLIQ 510

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDAD 441
             +    +K      +S +  KL+  IQ+ + D
Sbjct: 511 H-RVEIMRKPKKEWIQSAQQKKLRNQIQQEEDD 542


>gi|154336403|ref|XP_001564437.1| ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134061472|emb|CAM38500.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 803

 Score =  142 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 129/380 (33%), Positives = 201/380 (52%), Gaps = 8/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL   ++ A+L  G+  PTPIQ K IP +LQ +DV  +A+TG+GKTA+F++PML  
Sbjct: 24  FQSFGLDKPLLDAILKKGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLNA 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  ++V   R L+L PTREL+ Q   N     +  +L  A L+GG   E Q + L   
Sbjct: 84  L-KAHSKVVGIRGLVLSPTRELSLQTLHNGFALNRFLDLRFAALVGGDSMEQQFELLASN 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR+L       L + ++  LV+DEADR+ ++G  P I  I   +P + Q  L
Sbjct: 143 PDVVVATPGRLLHIMEEASLHLTSVRCLVLDEADRLFELGLQPQIGAIMQKIPESCQRAL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK-----CALLQQ 237
           FSATM   L + +   L NP  I +++  + ++ ++                     L  
Sbjct: 203 FSATMPSVLAEFTSAGLHNPVVIRLDSEMTLSDQLKQSAFLVRNGEKVAALIVLLKRLLH 262

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + ++       +IF   K +V  L   L   G S  A+HG +DQ +R   + +F +    
Sbjct: 263 VGEAIVNNAQALIFVESKFHVEYLQMILTTYGISASAVHGQMDQEARRLAVRSFAKRETT 322

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MV +D+AARGLD+P + +V NF  P   + ++HR+GR  RAGR G A++L+  ED  + 
Sbjct: 323 VMVVTDVAARGLDLPLLDNVVNFSFPFNPKLFVHRVGRVARAGRSGTAYSLMTFEDFPYY 382

Query: 358 DAIEKLIEKKVD--WLNGDL 375
             + + I + +    + GDL
Sbjct: 383 IDLMQFIGRPLQSAPVPGDL 402


>gi|19115400|ref|NP_594488.1| ATP-dependent RNA helicase Has1 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|1351666|sp|Q09916|HAS1_SCHPO RecName: Full=ATP-dependent RNA helicase has1
 gi|1067204|emb|CAA91949.1| ATP-dependent RNA helicase Has1 (predicted) [Schizosaccharomyces
           pombe]
          Length = 578

 Score =  142 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 116/390 (29%), Positives = 199/390 (51%), Gaps = 6/390 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL LS  +  A+ + G+   T IQ ++IP +L   DV G A+TG+GKT +F++P + 
Sbjct: 90  KFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIE 149

Query: 62  ILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   + + R     +I+ PTRELA Q+    ++  K ++ T  ++IGG    A+  KL 
Sbjct: 150 MLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLV 209

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN-ITSLVPFTR 178
           +G ++L+ TPGR +    N    +  N+  LVIDEADR+L++GF   ++  +  L    R
Sbjct: 210 KGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENR 269

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT T +++ ++   L+               T+E          S K  LL   
Sbjct: 270 QTLLFSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKRFLLLFS 329

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +   +V  +   L      V  +HG   Q+ R      F      +
Sbjct: 330 FLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGI 389

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHI 357
           ++ +++AARGLDIP V  +  +D P+   +YIHR+GRT R  +  GK+   +A  ++  +
Sbjct: 390 LLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGKSLMFLAPSELGFL 449

Query: 358 DAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
             ++  K+   + ++    ++++   LEK+
Sbjct: 450 RYLKTAKVSLNEFEFPANKVANVQSQLEKL 479


>gi|254496850|ref|ZP_05109700.1| ATP-dependent RNA helicase DbpA [Legionella drancourtii LLAP12]
 gi|254353922|gb|EET12607.1| ATP-dependent RNA helicase DbpA [Legionella drancourtii LLAP12]
          Length = 475

 Score =  142 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 205/371 (55%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DLGL   ++  +   GY K TPIQ++++P +L+R DV   A+TG+GKTA+F L +L
Sbjct: 18  LSFSDLGLRDTLLTNLASLGYEKMTPIQVQSLPTLLKRIDVIAQAKTGSGKTAAFGLTLL 77

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL-IGGIPFEAQNKKL 119
             L+         + L+L PTRELA QV+    +  +       L   GG+PF  Q   L
Sbjct: 78  NHLKV---EFFATQALVLCPTRELAEQVSQAIRRLARLLPNVKVLNLSGGMPFTPQLDSL 134

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA +++ TPGRI  H ++  L + ++  LV+DEADRMLDMGF   I+NI    P TRQ
Sbjct: 135 RHGAHIVVGTPGRIQKHLDKNSLSLKHLNTLVLDEADRMLDMGFFDEIKNIIRTCPTTRQ 194

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   E++ +++ F+++P++I   T     + +           +K    L   L
Sbjct: 195 TLLFSATYPAEIKNLADEFMRDPQKI---TIEENHDELNIEQHFYEVNNAKDKFALLNDL 251

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + +IFCN K+    +   L + GFS   ++G+++Q  R   +  F   +  ++
Sbjct: 252 LRHHKPTSTLIFCNTKEQTNQVSRQLTQAGFSATMLNGDMEQIDRDLAMIRFGNKSCSIL 311

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++  V N+++      +IHRIGRTGRAG  G  F +    D + +  
Sbjct: 312 VATDVAARGLDIKELPAVVNYELAFDLAVHIHRIGRTGRAGHKGLVFNITTPADAERLCL 371

Query: 360 IEKLIEKKVDW 370
           IE+ + + + W
Sbjct: 372 IEEELGRPITW 382


>gi|326504986|dbj|BAK02880.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 756

 Score =  142 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 101/392 (25%), Positives = 182/392 (46%), Gaps = 7/392 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F +L LS K   A+   GY + + IQ   +P  L   DV G A+TG+GKT +FV+P +  
Sbjct: 68  FDELPLSTKTKDALRQQGYKEMSEIQRAALPHALCGRDVLGAAKTGSGKTLAFVIPVIEK 127

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  +  ++      +IL PT +LA Q+ +   K GK++N +   ++     E + +++  
Sbjct: 128 LYREKWSQEDGVGCIILSPTNDLAGQIWEVVRKVGKHHNFSGGAIVKRTGIEQEKERINS 187

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +           +N++ILV+DEAD++LD  F   +  I S +P  RQTL
Sbjct: 188 LNILVCTPGRLVQHFDETPNFDCSNLQILVLDEADQILDQNFKSQVDIIISQIPKVRQTL 247

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L+NP+ I V+  + TA        A      +K  +L   ++ 
Sbjct: 248 LFSATQTKSVKDLARVSLKNPEYISVHEQAITATPDNLEQCAMIVPLEQKLNMLWSFIKR 307

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               K  +   + K+         + +            +    + +      +  ++ +
Sbjct: 308 HLKSKILVFLSSVKQVKFVYEIFKKLRPGIPLKCMHGRMKYEVQQAIVAEFSESTSVLFS 367

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLDI +V  V   D P     YIHR+GRT R  + GK+   +  E+ + ++ + 
Sbjct: 368 TDIFARGLDIGNVDWVVQVDCPESVALYIHRVGRTARYNKKGKSLIFLCPEEERMLEKL- 426

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           K  E K+      ++   P +E+++    N A
Sbjct: 427 KATESKIP-----INVRKPKVEQLEQISQNVA 453


>gi|296169013|ref|ZP_06850678.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295896310|gb|EFG75967.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 443

 Score =  142 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 150/434 (34%), Positives = 226/434 (52%), Gaps = 13/434 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+LG+  ++V A+ + G  +P  IQ  T+PL L   D+ G A+TG GKT +F +P+L
Sbjct: 10  LTFANLGVRDEIVRALAEKGIERPFAIQELTLPLALAGDDLIGQARTGMGKTLAFGVPLL 69

Query: 61  TILEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGKN------YNLTVALLIGGIP 111
             +  G   RA    PR L++ PTREL  QV  +     K         L+V  + GG P
Sbjct: 70  NRITAGVGVRALNGTPRALVVVPTRELCLQVHGDLSDAAKYLKAEGDRPLSVVSIYGGRP 129

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q + L  GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+ I 
Sbjct: 130 YEPQIEALRAGADVVVGTPGRLLDLSQQGHLQLGGLSMLVLDEADEMLDLGFLPDIERIL 189

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
             +P  RQ++LFSATM   +  ++  F+  P  I    P S A           A    K
Sbjct: 190 RQIPEERQSMLFSATMPGPIITLARTFMNQPTHIRAEAPHSAATHDTTEQFVYRAHALDK 249

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             ++ ++LQ++      I     K+    +   L ++GF V A+HG++ Q +R K L  F
Sbjct: 250 VEMVSRILQAEGRGATMIFT-RTKRTAQKVADELAERGFKVGAVHGDLGQIAREKALKAF 308

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G I ++VA+D+AARG+DI D+ HV N+ +P   + Y+HRIGRTGRAG+ G A TLV  
Sbjct: 309 RNGDIDVLVATDVAARGIDIDDITHVINYQIPEDEQAYVHRIGRTGRAGKTGIAVTLVDW 368

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           +++     I+K +           S+     E++ I          P   K     RRK 
Sbjct: 369 DELPRWSMIDKALGLDSPDPAETYSNSPHLYEEMGIPAEAGGAIGTP---KKPQGQRRKT 425

Query: 412 NYSSQKSHIPLKES 425
               QK+    +  
Sbjct: 426 ERDGQKTERSGRSR 439


>gi|224085245|ref|XP_002307523.1| predicted protein [Populus trichocarpa]
 gi|222856972|gb|EEE94519.1| predicted protein [Populus trichocarpa]
          Length = 573

 Score =  142 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 132/458 (28%), Positives = 209/458 (45%), Gaps = 24/458 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS +V+ AV + G   PT IQ   IP +L    V   + TG+GKT +++LP++ 
Sbjct: 117 SFEELGLSEEVMGAVKEMGIEVPTEIQCIGIPAILDSRTVVLGSHTGSGKTLAYMLPLVQ 176

Query: 62  ILEKGR------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +L +         + R PR ++L PTREL+ QV    +  G +      ++ GG     Q
Sbjct: 177 LLRRDEALLGRLMKPRRPRAVVLCPTRELSEQVFRVAKSIGHHARFRSTMVSGGGRMRPQ 236

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L    D+++ TPGR+L H   G ++  +I+ LV+DEAD M D GF P I      + 
Sbjct: 237 EDSLNNPIDMVVGTPGRVLQHIQDGNMVYGDIKYLVLDEADTMFDRGFGPDIHKFLGPLK 296

Query: 176 FT--------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
                      QT+L +ATMT  +QK+ +   Q  + +  +T      +  H F+     
Sbjct: 297 NRTSKSDGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLSGS 356

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
            +K  ALLQ L  S       ++FCN   +     H L +   S    HG +    R++ 
Sbjct: 357 ENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAADHFLAENQISTVNYHGEVPAEQRVEN 416

Query: 288 LSNFKEGTIQLMVASDLAARGLDIP-DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
           L+ FK                  +  DV HV  FD P  + +Y+HR GRT R G  GK  
Sbjct: 417 LNKFKSDDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 476

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
           +LVA++D +    IE+ + K     N  L SL     + DIA+     +     +     
Sbjct: 477 SLVARKDQQLAARIEEAMRK-----NESLESLTVDNVRRDIARARITEQQGKSAKLIKAS 531

Query: 407 DRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLG 444
           +++  N + +K   PL++   +S+L +   E++     
Sbjct: 532 NQKSNNKNMEK--HPLQQ--NLSRLLRLQNESNPPVQA 565


>gi|195437654|ref|XP_002066755.1| GK24389 [Drosophila willistoni]
 gi|194162840|gb|EDW77741.1| GK24389 [Drosophila willistoni]
          Length = 808

 Score =  142 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 126/392 (32%), Positives = 207/392 (52%), Gaps = 34/392 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + G  P+++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L+
Sbjct: 381 SWNESGFPPEIIDIIDRVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLS 440

Query: 62  ILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            ++            + P  +I+ PTRELA Q+ +   K+G+   +   +++GG+  E Q
Sbjct: 441 WIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQ 500

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 501 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 560

Query: 176 -------------------------FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
                                      RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 561 VTNLKPDTEEAEDESKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV 620

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               E  E           +K  +          +   IIF NQKK    L   LEK G+
Sbjct: 621 GKPTERTEQIVYMMGENDKRKKLMEILSRSIDPPI---IIFVNQKKGADVLAKGLEKLGY 677

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           + C +HG   Q  R   L+  K G   ++VA+D+A RG+DI DV  V N+D+    E+Y 
Sbjct: 678 NSCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYT 737

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           HRIGRTGRAG++G A + V K+D      +++
Sbjct: 738 HRIGRTGRAGKNGVAISFVTKDDSSLFYDLKQ 769


>gi|122937741|gb|ABM68586.1| AAEL001216-PA [Aedes aegypti]
          Length = 419

 Score =  142 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 89/375 (23%), Positives = 163/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 43  FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE       +             ++  + F KY  N  + V      I  + +  K    
Sbjct: 103 LEPTENVPYVLVMCHTRELAFQISKEYERFSKYMPNIKVAVFFGGLPIQKDEEVLKSTNP 162

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++      +    N+   L +    ++ +    +  +     +Q I    P  +Q ++
Sbjct: 163 HIIVGTPGRVLALIRNKKLNLKHLKHFILDECDKMLEQLDMRRDVQEIFRNTPHGKQVMM 222

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  + V+  +               +  K   L +      
Sbjct: 223 FSATLSKEIRPVCKKFMQDPMEVYVDDETKLTLHGLQQHYVKLKENEKNKKLFEL--LDV 280

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F    IH  + Q  R+     FK+   +++VA+
Sbjct: 281 LEFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMVQEERLSRYQQFKDFQKRILVAT 340

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 341 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKILNEVQ 400

Query: 362 KLIEKKVDWLNGDLS 376
              +  +  L  ++ 
Sbjct: 401 DRFDVNITELPDEID 415


>gi|157115837|ref|XP_001658306.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|94468806|gb|ABF18252.1| ATP-dependent RNA helicase [Aedes aegypti]
 gi|108883476|gb|EAT47701.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 423

 Score =  142 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 89/375 (23%), Positives = 163/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 43  FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE       +             ++  + F KY  N  + V      I  + +  K    
Sbjct: 103 LEPTENVPYVLVMCHTRELAFQISKEYERFSKYMPNIKVAVFFGGLPIQKDEEVLKSTNP 162

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++      +    N+   L +    ++ +    +  +     +Q I    P  +Q ++
Sbjct: 163 HIIVGTPGRVLALIRNKKLNLKHLKHFILDECDKMLEQLDMRRDVQEIFRNTPHGKQVMM 222

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  + V+  +               +  K   L +      
Sbjct: 223 FSATLSKEIRPVCKKFMQDPMEVYVDDETKLTLHGLQQHYVKLKENEKNKKLFEL--LDV 280

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F    IH  + Q  R+     FK+   +++VA+
Sbjct: 281 LEFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMVQEERLSRYQQFKDFQKRILVAT 340

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 341 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKILNEVQ 400

Query: 362 KLIEKKVDWLNGDLS 376
              +  +  L  ++ 
Sbjct: 401 DRFDVNITELPDEID 415


>gi|259502863|ref|ZP_05745765.1| ATP-dependent RNA helicase DbpA [Lactobacillus antri DSM 16041]
 gi|259169230|gb|EEW53725.1| ATP-dependent RNA helicase DbpA [Lactobacillus antri DSM 16041]
          Length = 463

 Score =  142 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 116/447 (25%), Positives = 196/447 (43%), Gaps = 24/447 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L P ++ AV    + +PT +Q K IP +L    V G + TG+GKT +F+LP+ +
Sbjct: 11  TFNDFKLKPYLLKAVKAINFHEPTAVQEKVIPDILAGKSVVGQSATGSGKTHAFLLPIFS 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     V+   T             A    +Y          + G        +   +
Sbjct: 71  RLDPTVQEVQAVITTPSRELAYQIYNAAKQLNQYADQPLTIHNYVGGTDKQHQIAQLERK 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LD      L ++   + V+DEAD  LDMGF+  +  I    P   Q +
Sbjct: 131 QPQLVIGTPGRVLDLIKSQHLDVHTATMFVVDEADMTLDMGFLEQVDQIAGRFPENLQMM 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+ ++L+   + ++ NP   E+ T +     +E+  ++T      +         +
Sbjct: 191 VFSATIPEKLRPFLKKYMANPVIEEIPTATVINPNVENWLLSTKGHDRNQLIYQLL---T 247

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F N K+    L   L +QG  V  IHG ++ R R + +   +    Q +VA
Sbjct: 248 MGEPYLALVFANTKERAEELTRYLTEQGLKVALIHGGLEPRKRKRTMRQIRNLDYQYVVA 307

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+DI  V  V N D+P   E ++HR+GRTGR    G A TL    + + I  +E
Sbjct: 308 TDLAARGIDIDGVSLVINDDLPTDLEYFVHRVGRTGRNQLTGTAITLYEPAEDELIAKLE 367

Query: 362 KLIEKKVDWLNGDLSS--------------LNPPLEKIDIAQHNHARKNNP--IPQKSTG 405
              ++ + ++  +L +                   +++D +   + +K      P     
Sbjct: 368 ---DRGISFVPKELKNGRLVTTHDRNRRKKFRHRQDELDPSMKGYVKKTKRKVKPGYKKR 424

Query: 406 FDRRKKNYSSQKSHIPLKESEKISKLQ 432
             R  K+   QK  + L+   KI K +
Sbjct: 425 IKRAIKDDEQQKRRLELR--HKIRKAK 449


>gi|67423408|dbj|BAD99523.1| VASA RNA helicase [Artemia franciscana]
          Length = 726

 Score =  142 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 118/388 (30%), Positives = 199/388 (51%), Gaps = 14/388 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL PK++  +  +GY +PTP+Q   IP+++++ D+   AQTG+GKT ++++P++ 
Sbjct: 305 SFDAAGLRPKILDNIKKSGYTQPTPVQKWAIPVIMKKRDLMACAQTGSGKTGAYLIPIIN 364

Query: 62  ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                          + P  +++ PTRELA Q+     K+  +  +   ++ GG+    Q
Sbjct: 365 RLIEEGCAASSYDETQTPEAVVMCPTRELAIQIFKEAVKFSYDTIIKPVVVYGGVAPRYQ 424

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI----PYIQNIT 171
           + K++ G ++L+ TPGR++D  NRG    +  + LV+DEADRMLDMGF+      + + T
Sbjct: 425 SDKVKSGCNILVGTPGRLIDFMNRGVFNFSACKFLVLDEADRMLDMGFMGEVKKVVYHGT 484

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
             V   R TL+FSAT  +E+Q+++  FL+N   + V T                   +K 
Sbjct: 485 MPVKVERNTLMFSATFPNEVQELAAEFLENYIFVTVGTVGG---ACMDVLQEVIEIDAKS 541

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                  + ++      ++F + KK    L   L  +     +IHG+  Q  R ++L +F
Sbjct: 542 RIDRLLEILTEKEGVKTLVFASSKKTADFLAALLSTKNLPATSIHGDRFQYQREEVLRDF 601

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   ++VA+ +AARGLDI  VG V N+++P   + Y+HRIGRTGR G  G A +    
Sbjct: 602 KSGHRNILVATAVAARGLDIKGVGLVINYELPTDIDEYVHRIGRTGRLGNTGHAISFFNP 661

Query: 352 E-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           + D      +  ++      +   L S+
Sbjct: 662 DKDSAIAGKLVNVLAAAQQTVPVFLESM 689


>gi|66551115|ref|XP_623285.1| PREDICTED: eukaryotic initiation factor 4A-like isoform 2 [Apis
           mellifera]
          Length = 423

 Score =  142 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L  +++  +   G+ KP+ IQ + I   ++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 51  NFDEMNLKEELLRGIYAYGFEKPSAIQQRAILPCIRGHDVIAQAQSGTGKTATFSISILQ 110

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G   +      IGG       +KL++
Sbjct: 111 QIDTTIKE---CQALILAPTRELAQQIQKVVIALGDFMHAECHACIGGTNVREDMRKLDQ 167

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D  +R  L  ++I++ V+DEAD ML  GF   I ++  L+P   Q +
Sbjct: 168 GVHIVVGTPGRVYDMISRRALRASSIKLFVLDEADEMLSRGFKDQIHDVFKLLPHEVQVI 227

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++  VS+ F++NP RI V     T E I+  F+    +  K   L       
Sbjct: 228 LLSATMPSDVLDVSKCFMRNPIRILVKKEELTLEGIKQFFIYVEREEWKFETLCDL--YD 285

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L  S+  + F+V A+HG+++Q+ R  I+  F+ G+ ++++ 
Sbjct: 286 TLSITQAVIFCNTRRKVDWLTESMRTRDFTVSAMHGDMEQKERDLIMRQFRTGSSRVLIT 345

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A  LV  +D + +  IE
Sbjct: 346 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINLVTDDDKRTLKDIE 405

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 406 QFYNTSIEEMPMNVADL 422


>gi|6014919|sp|O61305|DDX19_DROME RecName: Full=DEAD-box helicase Dbp80
 gi|3108197|gb|AAC23709.1| DEAD-box helicase [Drosophila melanogaster]
          Length = 460

 Score =  142 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 101/393 (25%), Positives = 171/393 (43%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  L L   ++  +   G+  P+ IQ   +P +L     ++   +Q+GTGKTA+FVL M
Sbjct: 74  TFEALHLKASLLKGIYAMGFNTPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 133

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +      +  P+ L L PT ELA Q  +   + G+                 ++KK+
Sbjct: 134 LSRVNVC---LNHPQVLCLSPTYELAIQTGEVAARMGQFCREIKLRFAVRGEEVDRSKKI 190

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E    +             R   +      ++ +    +   G       I  ++    Q
Sbjct: 191 EEHILIGTPGKLLDWGIKFRLFDMKKISVFVLDEADVMIATQGHHDQCIRIHKMLNPHCQ 250

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSAT   E+   +   + +P  I +     + E I+  +V    +  K      Q +
Sbjct: 251 MLFFSATYGKEVMDFARLIVADPTIIRLMREEESLENIKQYYVKCKNEEGKY--NAIQNI 308

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               ++   IIFC+ K+    L   +   G SV  + G++    R+ +L  F+ G  +++
Sbjct: 309 YGCISVGQAIIFCHTKRTAAWLAAKMTSDGHSVAVLTGDLTVVQRLDVLDRFRSGLEKVL 368

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLVAKE- 352
           + +++ +RG+DI  +  V NFD+P         E Y+HRIGRTGR G+ G A  L+  E 
Sbjct: 369 ITTNILSRGIDIEQLQVVVNFDLPVDLDGMADCETYLHRIGRTGRFGKSGIAINLITDEK 428

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
            +K    IEK   KK++ LN D +     +EKI
Sbjct: 429 TMKVCSDIEKHFNKKIEVLNTDSAD---DIEKI 458


>gi|332027726|gb|EGI67794.1| Eukaryotic initiation factor 4A-III [Acromyrmex echinatior]
          Length = 366

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 114/377 (30%), Positives = 184/377 (48%), Gaps = 41/377 (10%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++GL  +++  +   G+ KP+ IQ ++I  +++  DV   AQ+GTGKTA+F + +L 
Sbjct: 30  TFDNMGLRDELLRGIYAYGFEKPSAIQQRSIKPIMKGRDVIAQAQSGTGKTATFSIAILQ 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    +VR  + L+L PTRELA Q+       G   N+     IGG       +KL+ 
Sbjct: 90  SLDT---QVRETQVLVLSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDY 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+  TPGR+ D   R  L    I++LV+DE+D ML+ GF   I ++   +P   Q +
Sbjct: 147 GQHVVSGTPGRVFDMIKRRVLRTRAIKMLVLDESDEMLNKGFKEQIYDVYRYLPPATQVV 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT+  E+ +++  F+ +P RI V     T E I+  FVA   +  K   L       
Sbjct: 207 LVSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL--YD 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN K+ V  L   + +  F+VC++HG++ Q+ R  I+  F+ G       
Sbjct: 265 TLTITQAVIFCNTKRKVDWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRSG------- 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
                                         RIGR+GR GR G +   V  +DI+ +  IE
Sbjct: 318 -----------------------------QRIGRSGRFGRKGVSINFVKTDDIRILRDIE 348

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 349 QYYSTQIDEMPMNVADL 365


>gi|325114733|emb|CBZ50289.1| putative ATP-dependent RNA helicase [Neospora caninum Liverpool]
          Length = 685

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 112/438 (25%), Positives = 192/438 (43%), Gaps = 7/438 (1%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
           A LGL   +   +      KPTPIQ++ +PL+L    +   A TG+GKT +F+LP++T+L
Sbjct: 255 ASLGLPLWLQERLKGRSIEKPTPIQMQALPLLLGGQHLLATAPTGSGKTFAFLLPLITLL 314

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
           ++          L++ P+RELA Q    F+           LL        Q     +  
Sbjct: 315 KRPGKEFAR--LLVVCPSRELAKQTQREFDSLAGARGFRCRLLDEQKQGTDQPLSQAKRV 372

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
           D +  TP R++     G++ +     LV+DEAD++LD+GF P +  I +   F R  +  
Sbjct: 373 DAVATTPLRLVQFLRDGRVSLAQCRHLVLDEADKLLDLGFAPQLDEILAGCTFPRLQVCL 432

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
            +           + L +          + A T     +        K   L+ L  +  
Sbjct: 433 FSATLPPEVLRLADSLLHNPVHISIGAPNAAATSIEQELLFCTNEEGKLLALRTLHLTGK 492

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
            +   +IF   K+    L   L   G  V  IH +  ++ R  I+  F+ G I +++ +D
Sbjct: 493 FVPPVLIFVQSKERAKQLYCELVYDGIFVECIHADKTKKQRDDIVEAFRRGQIWVLICTD 552

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           + ARG+D  +V  V N+D P  A  YIHRIGRTGRAGR G+A T     DI ++ ++  +
Sbjct: 553 VMARGVDFKNVELVINYDFPQSAAVYIHRIGRTGRAGRQGRAITFYTTTDIPNLRSVVGV 612

Query: 364 IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLK 423
           +++       ++      + K+   Q    +K    P++         +   +K      
Sbjct: 613 MQQT---STCEVPEWLQKMTKMTAKQKRDLQKR--APERKPILTTPATDVRKEKRRQQAI 667

Query: 424 ESEKISKLQQDIQENDAD 441
           E+ K  K +++  E  ++
Sbjct: 668 EASKAKKRRREAAEAGSE 685


>gi|21231720|ref|NP_637637.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768154|ref|YP_242916.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188991291|ref|YP_001903301.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21113422|gb|AAM41561.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573486|gb|AAY48896.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167733051|emb|CAP51249.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris]
          Length = 458

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 131/408 (32%), Positives = 198/408 (48%), Gaps = 8/408 (1%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F+ L LSP +   +   GY   TPIQ +++P +LQ  DV   A TG+GKTA+F L +
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTTLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  L+    R +                        G      + L  G           
Sbjct: 61  LQKLDPALTRAQALVLC-PTRELADQVGKQLRKLATGIPNMKLLVLTGGMPLGPQLASLE 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I S     RQ
Sbjct: 120 AHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT  D ++ ++   L++P  I V    +  E  +  F        K  A L    
Sbjct: 180 SLLFSATFPDIIRTLARELLKDPVEITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLL-- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ ++FCN +K V  +  SL++ GFS  A+HG+++QR R ++L  F   +  ++
Sbjct: 238 --RFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+HG A +LVA  +     A
Sbjct: 296 VASDVAARGLDVEDLAAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRESARAQA 355

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           +E    + + W    L++  P   ++ +A     R +     K    D
Sbjct: 356 LEAEHGQPLKWSRAPLATARPA--QLPLAAMTTLRIDGGKTDKLRAGD 401


>gi|643070|gb|AAA80219.1| ribosomal DEAD box protein [Leishmania braziliensis]
          Length = 403

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 112/376 (29%), Positives = 187/376 (49%), Gaps = 3/376 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   G+ KP+ IQ + I    +  D+   AQ+GTGKT +F + +L 
Sbjct: 27  SFDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQ 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     ++              A+V     ++  N        +GG   +   +KL+ 
Sbjct: 87  RLDFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSAKFCETFVGGTRVQDDLRKLQA 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V + TPGR+ D   RG L   ++ +LV+DEAD ML  GF   I  I   +P   Q  
Sbjct: 147 GVVVAVGTPGRVSDVIKRGALRTESLRVLVLDEADEMLSQGFADQIYEIFRFLPKDIQVA 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +E+ ++++ F+++P RI V   S T E I        A   +        L  
Sbjct: 207 LFSATMPEEVLELTKKFMRDPVRILVKRESLTLEGI---KQFFIAVEEEHKLDTLMDLYE 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IF N ++ V  +   L +   +V ++H  + +  R ++++ F+ G+ +++V 
Sbjct: 264 TVSIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRVLVT 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P   ENY+HRIGR GR G  G A   V ++D++ +  IE
Sbjct: 324 TDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGVKGVAINFVTEKDVELLHEIE 383

Query: 362 KLIEKKVDWLNGDLSS 377
                ++D L  D ++
Sbjct: 384 GHYHTQIDELPVDFAA 399


>gi|149197292|ref|ZP_01874344.1| ATP-dependent RNA helicase, specific for 23S rRNA [Lentisphaera
           araneosa HTCC2155]
 gi|149139838|gb|EDM28239.1| ATP-dependent RNA helicase, specific for 23S rRNA [Lentisphaera
           araneosa HTCC2155]
          Length = 462

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 133/369 (36%), Positives = 212/369 (57%), Gaps = 6/369 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA L LS  ++  V   GY + T IQ  ++P +L   D+   A+TGTGKTA+F L +L+
Sbjct: 5   DFASLPLSEDLIKNVASLGYEEMTEIQELSLPAILDGKDLIAQAKTGTGKTAAFGLGVLS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLE 120
            L     R++    LIL PTREL  QV+       +       L + GG+PF  Q K + 
Sbjct: 65  KLVLDDYRIQ---VLILCPTRELCEQVSKAIRDLARMMPNIKLLSLGGGMPFRPQMKSVA 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRIL H N+  L ++++  LV+DEADRMLDMGF   I  I       RQT
Sbjct: 122 HGAHIVVGTPGRILKHLNKSSLSLDHVRTLVLDEADRMLDMGFQDEIDAIIDQTNKQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT   ++  +++  +++P RIE+++     E               +  L  QLL 
Sbjct: 182 LLFSATYPKKIATIAKRVMKDPLRIELDS--QVHEESTIEQHFYKVTSESQRLLGLQLLL 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   ++ ++FCN K+   ++C  L K GFS  A+HG+++Q+ R + L  F   ++ ++V
Sbjct: 240 DKFKSESAVVFCNTKQEAKDICKDLSKVGFSTLALHGDLEQKDRQENLVRFANKSVAVLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+ +    E ++HRIGRTGRAG++G A +L ++++   I  +
Sbjct: 300 ATDVAARGLDIDSIDLVINYHISRDFEVHVHRIGRTGRAGKNGIACSLHSQKEAHKISLL 359

Query: 361 EKLIEKKVD 369
           ++ + ++++
Sbjct: 360 QEFLGQEIE 368


>gi|318041670|ref|ZP_07973626.1| putative ATP-dependent RNA helicase [Synechococcus sp. CB0101]
          Length = 407

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 156/372 (41%), Positives = 224/372 (60%), Gaps = 8/372 (2%)

Query: 17  LDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA-RVRMPRT 75
           L+ GY  P+PIQ + IP VL+  DV   AQTGTGKTA F LPML  L  G   R  + R 
Sbjct: 2   LEKGYTNPSPIQTQCIPAVLEGRDVMAAAQTGTGKTAGFTLPMLERLRHGPHARNNVVRA 61

Query: 76  LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           L+L PTRELAAQV +N   Y ++ +L   ++ GG+    Q  +L  GADVL+ TPGR++D
Sbjct: 62  LVLTPTRELAAQVGENVAAYSRHLDLRSDVVFGGVKINPQMMRLRGGADVLVATPGRLMD 121

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
              +  + +N +EILV+DEADRMLDMGFI  IQ I +L+P  RQ LLFSAT    ++K++
Sbjct: 122 LAQQNAVKLNRVEILVLDEADRMLDMGFIRDIQKILALLPAKRQNLLFSATFEASIKKLA 181

Query: 196 ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
              L NP +++    + TA T+EH                       +  +  ++F   K
Sbjct: 182 TGLLHNPVQLQATPENRTATTVEHLLHPCDMARKPDLLCHL---IKSNDWQQVLVFSRTK 238

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
                +   L ++G +  AIHGN  Q +R + L+ FK G ++++VA+D+AARG+DI  + 
Sbjct: 239 HGANRIADRLTQEGMAAAAIHGNKSQGARTRALAGFKSGELRVLVATDIAARGIDIHQLP 298

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV--DWLNG 373
           HV N D+PN+AE+Y+HRIGRTGRAG +G A +LVA E+ + + AIE+LI   +    + G
Sbjct: 299 HVVNLDLPNQAEDYVHRIGRTGRAGCNGHAVSLVAAEEHELLRAIERLIGNPLPKQEVPG 358

Query: 374 DLSSLN--PPLE 383
              +++  PPL+
Sbjct: 359 FERTIHSAPPLD 370


>gi|294626526|ref|ZP_06705125.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599216|gb|EFF43354.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 570

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 125/422 (29%), Positives = 215/422 (50%), Gaps = 6/422 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L P ++  +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++
Sbjct: 9   VTFSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVM 68

Query: 61  T----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                       +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q 
Sbjct: 69  NRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQR 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIE-ILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L++G DV+I TPGR++D+  + K++  +   I V+DEADRM D+GFI  I+ +   +P
Sbjct: 129 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                     + T   + +   +    +  ++   + +  T        Y    ++   L
Sbjct: 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESI-TAARVRQRIYFPSDEEKQTL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L S+      ++F N K  V  +  +LE+ G+ V  + G++ Q+ R  +L+ F++G 
Sbjct: 248 LLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +  IE  IE+K+         L P      +         +      T F   ++  ++
Sbjct: 368 SLPDIEAYIEQKIPVEPVTSELLTPLPRAPRVPVVGEEVDEDAGDSVGTIFREAREQRAA 427

Query: 416 QK 417
           ++
Sbjct: 428 EE 429


>gi|156973083|ref|YP_001443990.1| ATP-dependent RNA helicase DbpA [Vibrio harveyi ATCC BAA-1116]
 gi|156524677|gb|ABU69763.1| hypothetical protein VIBHAR_00762 [Vibrio harveyi ATCC BAA-1116]
          Length = 459

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 139/368 (37%), Positives = 216/368 (58%), Gaps = 7/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL+P ++  +    Y   TPIQ  ++P +L + DV G  +TG+GKTA+F L +L+
Sbjct: 5   TFDQVGLNPALLETLESLNYTHMTPIQALSLPAILNQRDVIGQGKTGSGKTAAFGLGVLS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+   +L+L PTRELA QVA      G+  +    L +  G+P   Q   LE
Sbjct: 65  NLNVKRFRVQ---SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH  +G++ +  +  LV+DEADRML+MGF   +  I    P  RQT
Sbjct: 122 HGAHILVGTPGRILDHLEKGRINLEELNTLVLDEADRMLEMGFQDALDAIIDAAPKQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  ++++++++  +Q+P+ I+V +   T +T          + S+        L 
Sbjct: 182 LLFSATFPEKIEQIAQRIMQSPEMIKVES---THDTSSIAQYFYNVEGSEARDEALANLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++FCN KK V N+   L  +GFSV  +HG+++QR R + L  F   ++ ++V
Sbjct: 239 LTHQPESAVVFCNTKKEVQNVADELHHKGFSVVDLHGDLEQRERDQALVQFANKSVSILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+   ++D   +  I
Sbjct: 299 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARI 358

Query: 361 EKLIEKKV 368
           E+ +E  V
Sbjct: 359 EEYLEMDV 366


>gi|4689114|gb|AAD27766.1|AF077033_1 putative ATP-dependent RNA helicase ROK1 [Homo sapiens]
          Length = 598

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 107/441 (24%), Positives = 199/441 (45%), Gaps = 28/441 (6%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     ++ +++  +LDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 162 TFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 221

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L++   +      LI+ PTRELA+Q+     K  +        +    +  +   
Sbjct: 222 PILMQLKQPANKGFR--ALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFG 279

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN-----NIEILVIDEADRMLDMGFIPYIQNIT 171
            K  +  D+L+ TP R++    +    ++      + +   D+  +M       ++    
Sbjct: 280 PKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLLKMQTGSETSWLPFSW 339

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
              P   +  +FSAT   ++++   +         +   +S  ET+E   +   ++  K 
Sbjct: 340 PAHPTRSEEPMFSATFAYDVEQWCNSTWTMSSVCPLEARNSAVETVEQELLFVGSETGKL 399

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
            A+ + + +  +     ++F    +    L H L  +G +V  IH    Q+ R   + +F
Sbjct: 400 LAVRELVKKGFNPP--VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSF 457

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   +
Sbjct: 458 RAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTE 517

Query: 352 EDIKHIDAIEKLIEKK----VDWLNG--------DLSSLNPPLEKIDIAQHNH--ARKNN 397
           +D   + ++  +I++      +++ G            +  PLE+  I+        K  
Sbjct: 518 DDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPKCFLEKAK 577

Query: 398 PIPQKSTGFDRRKKNYSSQKS 418
              +K TG + +KK     KS
Sbjct: 578 DKQKKVTGQNSKKKVALEDKS 598


>gi|328781928|ref|XP_397101.4| PREDICTED: ATP-dependent RNA helicase DDX54-like [Apis mellifera]
          Length = 772

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 203/371 (54%), Gaps = 2/371 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  ++  +L  GY  PTPIQ KTIPL L+  D+  +A+TG+GKTA F++P+   
Sbjct: 38  FQSMALSFPILKGILKRGYKIPTPIQRKTIPLALEGRDIVAMARTGSGKTACFLIPLFEK 97

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  +A+V   R LIL PTRELA Q     ++ G+   L   +++GG   E Q   +   
Sbjct: 98  LKIRQAKVGA-RALILSPTRELALQTLKFIKELGRFTGLKATIILGGDNMENQFSAIHGN 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI TPGR L       L +NNIE +V DEADR+ +MGF   I  I + +P +RQTLL
Sbjct: 157 PDILIATPGRFLHICIEMDLQLNNIEYVVFDEADRLFEMGFGEQINEIINRLPESRQTLL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L   ++  L +P  + ++  +   E +   F+    +  K   LL  L    
Sbjct: 217 FSATLPKLLVDFAKIGLNDPVLLRLDVENKIPEQLTLSFIICRPEQ-KLAILLCLLKNII 275

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF     +V  +   LEK G S   I+ N+D  +R    + F+   + +++ +
Sbjct: 276 KNNTQTVIFAATMHHVEYIHQILEKAGISNTYIYSNLDASARKINAAKFQTNKVHVLIVT 335

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIP + +V NF+ P +++ ++HR+GR  RAGR G A+ +V+ ++  ++  +  
Sbjct: 336 DVAARGLDIPHLDNVINFNFPAKSKLFVHRVGRCARAGRTGTAYNIVSPDEYAYLLDLHL 395

Query: 363 LIEKKVDWLNG 373
            + + +  +  
Sbjct: 396 FLGRSLHIVPP 406


>gi|302833407|ref|XP_002948267.1| hypothetical protein VOLCADRAFT_31305 [Volvox carteri f.
           nagariensis]
 gi|300266487|gb|EFJ50674.1| hypothetical protein VOLCADRAFT_31305 [Volvox carteri f.
           nagariensis]
          Length = 410

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 137/407 (33%), Positives = 212/407 (52%), Gaps = 10/407 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+  ++  A    G+  P+ IQ + IP +LQ  DV G+AQTG+GKT +F LP+L  
Sbjct: 1   FEKLGICTQLAEAAAGLGWKSPSNIQEQAIPHLLQGQDVIGLAQTGSGKTGAFSLPILQA 60

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     R +    LIL PTRELA Q+A+  E  G    +  A+L+GGI   AQ   L + 
Sbjct: 61  L---MERPQEHFALILSPTRELAIQIAEQVEALGSGIGVKCAVLVGGIDMMAQAIALAKR 117

Query: 123 ADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +L+ TPGR++DH +  K      ++ LV+DEAD++LDM F   I  I  ++P  R+T 
Sbjct: 118 PHILVGTPGRVVDHLSNTKGFNLKQLKHLVLDEADKLLDMDFEQEIDQILKVIPRDRRTQ 177

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT+++QK+         R      ++   T+E          +K        + +
Sbjct: 178 LFSATMTNKVQKLQR---ACLVRPVKVEVAAKYSTVETLRQQYVFIPAKYKDCYLAYVLN 234

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + +    +IF    ++   +   L   GF    IHG++ Q  R+  L+ FK G   ++ A
Sbjct: 235 ELSGSTFMIFTRTCESTRRIALMLRNLGFGAVPIHGHMSQPKRLGALNKFKAGERSILAA 294

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDIP V  V N+D    +++YIHR+GRT RAGR G++ T+V + D++    IE
Sbjct: 295 TDVASRGLDIPSVDVVINYD---NSKDYIHRVGRTARAGRSGRSVTIVTQYDVELFQKIE 351

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
            L   K++    +   +   LE++  AQ   A +         G  +
Sbjct: 352 HLTGVKMEQFQAEREEVLLLLERVSDAQRLAAMQMKEADAGKKGKRK 398


>gi|323341495|ref|ZP_08081736.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
 gi|323091106|gb|EFZ33737.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
          Length = 446

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 121/365 (33%), Positives = 189/365 (51%), Gaps = 9/365 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA  G  P +  A+ + G+ +PT +Q + IPL+L+R  V G +QTG+GKT +F+LP+  
Sbjct: 4   TFAQFGFKPFIDAALKEIGFKEPTEVQARLIPLILKRRSVVGQSQTGSGKTHTFLLPIFQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK--- 118
            ++     V+     I  P+RELA Q+ D  ++  K+    + +       + Q +    
Sbjct: 64  TIDPELTEVQAV---ITTPSRELAYQIYDAAKQIAKHSEKEILVHNYVGGTDKQRQIEKL 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             R   ++I TPGR+LD      L ++N  +LV+DEAD  LD+GF+     I S +P   
Sbjct: 121 EHRQPQIVIGTPGRVLDLMKSQALDVHNASVLVVDEADMTLDLGFLKETDAIASAMPKEL 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT+ D+L+     ++ +P    V   +  + TI++  ++T  +   +       
Sbjct: 181 QMMVFSATIPDKLKPFLRKYMTDPIVEVVENKNVISPTIDNWLISTKGRDRNQLIYQLL- 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +       ++F N K+ V +L   L  QG  V  IHG I  R R + +   +    Q 
Sbjct: 240 --TMGQPYLALVFANTKERVDDLTRYLRSQGLRVAKIHGGIPPRERKRTMREIQNMEYQF 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V  V N D+P   E +IHR+GRTGR G  G A TL A  + K I 
Sbjct: 298 VVATDLAARGIDIEGVSQVINDDIPEDLEFFIHRVGRTGRNGMEGTAITLYAPSEDKMIA 357

Query: 359 AIEKL 363
            +E L
Sbjct: 358 ELENL 362


>gi|147902341|ref|NP_001084744.1| hypothetical protein LOC414715 [Xenopus laevis]
 gi|46329511|gb|AAH68907.1| MGC83105 protein [Xenopus laevis]
          Length = 638

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 116/391 (29%), Positives = 198/391 (50%), Gaps = 9/391 (2%)

Query: 3   FADL--GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           F+ L   ++   + A+ + G+   T IQ K I  +L+  DV   A+TG+GKT +F++P +
Sbjct: 145 FSSLADSVNENTLKAITEMGFTHMTEIQHKAIRPLLEGRDVLAAARTGSGKTLAFLIPAI 204

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             I +           LIL PTRELA Q     ++   ++  T  L++GG    A+ +KL
Sbjct: 205 ELIYKLKFMPRNGTGVLILSPTRELAMQTYGVLKELMAHHVHTFGLIMGGSNRSAEAQKL 264

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             G ++++ TPGR+LDH       +  N++ LVIDEADR+L++GF   ++ I +L+P  R
Sbjct: 265 ANGVNIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEQEMKQIINLLPKRR 324

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT T +++ ++   ++               T++          S+K  LL   
Sbjct: 325 QTMLFSATQTRKVEDLARISMKKEPLYVGVDDHKETATVDGLEQGYVVCPSEKRFLLLFT 384

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  ++F +   +V      L      V AIHG   Q  R      F      +
Sbjct: 385 FLKKNRKKKMMVFFSSCMSVKYHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNAESGI 444

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR--AGRHGKAFTLVAKEDIKH 356
           ++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++  
Sbjct: 445 LLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGIDGR-GHALLILRPEELGF 503

Query: 357 IDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
           +  ++  K+   + ++    +S +   +EK+
Sbjct: 504 LRYLKQAKVPLSEFEFSWSKISDIQTQVEKL 534


>gi|319651577|ref|ZP_08005704.1| hypothetical protein HMPREF1013_02316 [Bacillus sp. 2_A_57_CT2]
 gi|317396644|gb|EFV77355.1| hypothetical protein HMPREF1013_02316 [Bacillus sp. 2_A_57_CT2]
          Length = 410

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 139/412 (33%), Positives = 212/412 (51%), Gaps = 17/412 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L P ++ AV D G+ +PT IQ + IP VL+     G +QTGTGKT S+VLP+L 
Sbjct: 5   KFDRFNLKPFIIEAVKDFGFFEPTEIQERMIPAVLKGESAIGQSQTGTGKTHSYVLPILQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNF----EKYGKNYNLTVALLIGGIPFEAQNK 117
            ++  R  V+     I  PTRELA Q+        E   +   +T    IGG   +   +
Sbjct: 65  KVDPSRQEVQAI---ITAPTRELANQIYHEILKVTEHCPEGEEITARCYIGGTDKQRTIE 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+R   V++ TPGRI D      L ++  EIL++DEAD MLDMGFI  +  I + +P  
Sbjct: 122 KLKRQPHVVVGTPGRINDLVKEQALFVHTAEILIVDEADLMLDMGFIEDVDQIAARMPEK 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+ ++L+   + +++NPK + V    + A  IEH  + +  +   +      
Sbjct: 182 LQMLVFSATIPEKLKPFLKKYMENPKYVHVEPKQAAAANIEHWLLPSRHRNKVELVYQAL 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              +       I+F N KK    +   L  +G  V  IHG+++ R R K++    +   Q
Sbjct: 242 ---TSLNPYLAIVFTNTKKKADEVADGLISKGLKVGRIHGDLNPRERKKMMKQILDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P   + YIHR+GRT RAG  G A T+    D   +
Sbjct: 299 YIVATDLAARGIDIQGISHVINYELPTDLDFYIHRVGRTARAGFSGIAVTVYETSDEDAL 358

Query: 358 DAIEKL-IE------KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           + +EK+ +E      +K +W + D  +     +K        A     IP+K
Sbjct: 359 NRLEKMGLEFQHKDLQKGEWTDLDNRNKRKTRQKQTDDIDKKAASLVKIPKK 410


>gi|196006399|ref|XP_002113066.1| hypothetical protein TRIADDRAFT_26030 [Trichoplax adhaerens]
 gi|190585107|gb|EDV25176.1| hypothetical protein TRIADDRAFT_26030 [Trichoplax adhaerens]
          Length = 491

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 113/391 (28%), Positives = 186/391 (47%), Gaps = 9/391 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  LS +   A+ +A Y  PT IQ ++IP+ L   DV G A+TG+GKT +F++P+L 
Sbjct: 8   EFTDFPLSSRTQIALKEAKYEIPTKIQKESIPIALSGRDVLGAAKTGSGKTLAFIIPILE 67

Query: 62  ILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L + +         +I+ PTRELA Q  +   K GK ++++  L+IGG   E + + + 
Sbjct: 68  LLWQQKWSSMDGIGAIIISPTRELAYQTFEVLRKIGKKHDMSAGLVIGGKSMEEEQRSII 127

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++      +           NN+++LV+DEADR+LDMGF   +  I   +P  RQT
Sbjct: 128 ATNIIVSTPGRLLQHMDETPNFDCNNLQLLVLDEADRILDMGFADTMNAILENIPDERQT 187

Query: 181 LLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT T  ++     +  +          +S+  +             K   L   + 
Sbjct: 188 LLFSATQTKSVKDLARLSLNEPAYVSVHENSTSSTPSRLKQSYMVCELQDKMNLLFSFIR 247

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               +     +   ++   V       + G  + A++G   Q  RM I + F   +  ++
Sbjct: 248 NHIKSKILIFMSSCKQVKFVYEAFRRLRPGIPLLALYGKQKQLKRMAIYNEFCRRSEAVL 307

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V   D P  A  YIHR GRT R  + G+A  ++   + + +  
Sbjct: 308 FATDIAARGLDFPAVDWVVQLDCPEDANTYIHRAGRTARYQKDGQALLVLLPSEEEGM-- 365

Query: 360 IEKLIEKKVDWL-----NGDLSSLNPPLEKI 385
           +E+L +KK++          L S+   LE +
Sbjct: 366 LEELKKKKLNLTSIRVNPSKLMSIGKKLEAL 396


>gi|148379738|ref|YP_001254279.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153933390|ref|YP_001384035.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           ATCC 19397]
 gi|153934793|ref|YP_001387577.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           Hall]
 gi|148289222|emb|CAL83317.1| putative ATP-dependent RNA helicase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152929434|gb|ABS34934.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152930707|gb|ABS36206.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. Hall]
          Length = 421

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 115/416 (27%), Positives = 213/416 (51%), Gaps = 14/416 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L+PK+V  +       PT IQ + IPL ++  D+ G ++TGTGKT +++LP+  
Sbjct: 4   SFDTLNLNPKLVQGLKKLNINIPTEIQAEAIPLAMENKDIIGQSETGTGKTLAYLLPIFE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNKKL 119
            +   +  ++     IL PT ELA Q+ +  +    N N+      +IG    + Q +KL
Sbjct: 64  KITTEKREMQAI---ILAPTHELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +++ +PGRIL+   + K+  + ++ +VIDE D++LD   +  ++ +       RQ
Sbjct: 121 KEKPHIIVGSPGRILELIKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT+T+    ++++ +++   ++V   ++  E I+H ++       ++   + + L
Sbjct: 181 LMLFSATITESTLNIAKDLMKDSVIVKVKEKNTVNENIKHLYITGEH---RERIEILRKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    K  I+F N+ + +      L+        I+G  ++  R K L +F+ G +Q++
Sbjct: 238 IAATNPKRAIVFINRNEEIELTTLKLQYHKIKAYGIYGAAEKEQRKKALEDFRSGKVQIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V+SDL+ARGLD+ DV H+FN D+P   + Y+HR+GRTGRA + G A +++ +++   I  
Sbjct: 298 VSSDLSARGLDVKDVTHIFNLDLPENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRK 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            EK     ++       +L      I       ++  +     S   D  KK  SS
Sbjct: 358 YEKEFNINIEEKKIYKGTL------ISSKGERSSQPKSKNKSTSAHKDNNKKKRSS 407


>gi|21228658|ref|NP_634580.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
 gi|20907159|gb|AAM32252.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
          Length = 429

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 156/412 (37%), Positives = 228/412 (55%), Gaps = 14/412 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  LGLS  V+ ++ + G+  PT IQ K+IPL+L   DV G A TG+GKT SF   +L 
Sbjct: 30  NFKKLGLSNAVLKSIDEHGFESPTAIQEKSIPLILAGEDVIGGAATGSGKTLSFASGILQ 89

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             EKG    +  + LIL PTRELA QVA++  K+ K   L +A + GG+    Q  K  +
Sbjct: 90  NSEKG----KGIQALILTPTRELAEQVANSLRKFSKYDPLNIASIYGGVGINTQI-KELK 144

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            A+V++ TPGR+LDH +R  + +NN++ LV+DEAD M DMGF   ++ I    P  RQTL
Sbjct: 145 NAEVVVGTPGRLLDHISRNTIKLNNVKTLVLDEADHMFDMGFKVDVEKIIKECPQNRQTL 204

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+T ++ ++S  +++NP R+   +     +         Y         L   L  
Sbjct: 205 LFSATITKDIVRLSRKYMENPVRVSTESYIDPQKL----NQVVYKVQDDMKLSLLVYLLQ 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +    G++FCN K+N   +  +L K   +  AIHG + Q  R +IL  F  G I ++V 
Sbjct: 261 NEKSNLGMVFCNTKRNTDKVAKNLRKSSINAVAIHGGLTQNERTRILEKFHSGNIGVLVC 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A RGLDI  V HV+N+D+P  ++ YIHRIGRT RAG  GKA  +++K D  +  ++ 
Sbjct: 321 TDVAGRGLDIQGVSHVYNYDIPRESKQYIHRIGRTARAGTEGKAINILSKNDHANFMSVL 380

Query: 362 KLIEKKVDWLNGDLSSLNP-PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           K  +  VD     L +L    +E+ DI       + N   +K  G   R KN
Sbjct: 381 K--DNDVDIKEQALPALKKIVIERPDIRLPKPVNRMNNPSRK--GRKPRHKN 428


>gi|78048143|ref|YP_364318.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036573|emb|CAJ24264.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 458

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 129/381 (33%), Positives = 189/381 (49%), Gaps = 6/381 (1%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F+ L LSP +   +   GY   TPIQ +++P +LQ  DV   A TG+GKTA+F L +
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  L+    R +                        G      V L  G           
Sbjct: 61  LQKLDPAVTRAQALVLC-PTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I S     RQ
Sbjct: 120 AHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT  D ++ ++   L+ P  I V    S  E  +  F        K  A L    
Sbjct: 180 SLLFSATFPDSIRTLARELLKEPVEITVEGADSAPEIDQQFFEVDPTYRQKAVAGLLL-- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ ++FCN +K V  +  SL++ GFS  A+HG+++QR R ++L  F   +  ++
Sbjct: 238 --RFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+HG A +LVA  +     A
Sbjct: 296 VASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARAQA 355

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           +E    + + W    L++  P
Sbjct: 356 LEAEQGQPLKWSRAPLATARP 376


>gi|260798638|ref|XP_002594307.1| hypothetical protein BRAFLDRAFT_275600 [Branchiostoma floridae]
 gi|229279540|gb|EEN50318.1| hypothetical protein BRAFLDRAFT_275600 [Branchiostoma floridae]
          Length = 563

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 137/441 (31%), Positives = 227/441 (51%), Gaps = 24/441 (5%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           + LS  +V A+    +  PTPIQ  TIP+ L   DVC  A TGTGKTA+F+LP+L  L  
Sbjct: 1   MNLSRPLVKAISQMKFHHPTPIQKATIPVALLGKDVCACAATGTGKTAAFMLPVLERLLY 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
              +  + R L+L PTRELA QV     +  +  ++ ++L  GG+    Q   L  G DV
Sbjct: 61  KPRQAPVTRVLVLAPTRELAVQVHQVSRQLAQFTSVEISLAAGGLDIRTQEAALRLGPDV 120

Query: 126 LICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +I TPGR++DH  N     + +IE+L++DEADRMLD  F   +  I  L    RQT+LFS
Sbjct: 121 VIATPGRLIDHLHNTPSFDLKSIEVLILDEADRMLDEFFEEQMNEIIRLCARKRQTMLFS 180

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           ATM+D+++ ++   L+NP ++ VN      +   +           +    + ++ ++  
Sbjct: 181 ATMSDQVKDLAAVSLENPVKLFVNE---NTDVAFNLRQEFIRIRPNREGDREAIIAARTF 237

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             + I+F   K     +   L   G +V  +HGN+ Q  R++ L  FK+  + +++A+DL
Sbjct: 238 HDHCIVFIQTKLQAHRMHIILGLLGLNVGELHGNLSQTQRLETLKRFKDAEVDVLLATDL 297

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK-- 362
           AARGLDI  V  V NF +P+  ++YIHR+GRT RAG+ G+A TLV +++ +++  + K  
Sbjct: 298 AARGLDIQGVKTVINFTMPSTLKHYIHRVGRTARAGKSGRAVTLVGEKERRYLKDVVKNA 357

Query: 363 ---------------LIEKKVDWLNGDLSS---LNPPLEKIDIAQHNHARKNNPIPQKST 404
                              K++ +  D++    L    +++   ++   R  N +     
Sbjct: 358 RNPVKSRVVPQEVILKYRDKIEKMEKDVAEILRLEAEEKEMASTENKMNRAQNMLNSPDN 417

Query: 405 GFDRRKKNYSSQKSHIPLKES 425
              +++  + + K  +  K  
Sbjct: 418 MAQQKRGWFQTHKERMEEKAR 438


>gi|115398049|ref|XP_001214616.1| ATP-dependent RNA helicase ded1 [Aspergillus terreus NIH2624]
 gi|121737954|sp|Q0CLJ6|DED1_ASPTN RecName: Full=ATP-dependent RNA helicase ded1
 gi|114192807|gb|EAU34507.1| ATP-dependent RNA helicase ded1 [Aspergillus terreus NIH2624]
          Length = 674

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 135/396 (34%), Positives = 209/396 (52%), Gaps = 22/396 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +  A Y+ PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 188 FTNPPLDDHLISNIALARYLTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 247

Query: 63  LE----------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                              GR R   P +LIL PTREL +Q+ D   K+     +   ++
Sbjct: 248 AFQNGPSPTPAPAGGQLGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVV 307

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ L++DEADRMLDMGF P 
Sbjct: 308 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQ 367

Query: 167 IQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I     
Sbjct: 368 IRRIVEGEDMPHVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVE 427

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +       +L +  T    +IF   K+   +L   L  Q F   AIHG+  QR
Sbjct: 428 YVEDHDKRSVL--LDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQR 485

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AA GLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 486 ERERALEMFRSGRCPILVATAVAASGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 545

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A     + +   +  +  L+++    +   L S+
Sbjct: 546 GIATAFFNRGNRGVVRDLIDLLKEAHQEVPTFLESI 581


>gi|269468447|gb|EEZ80112.1| hypothetical protein Sup05_1361 [uncultured SUP05 cluster
           bacterium]
          Length = 461

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 150/409 (36%), Positives = 220/409 (53%), Gaps = 12/409 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ L L P ++  +   GY   TPIQ  ++P +L   DV G  +TG+GKTA+F L +L 
Sbjct: 5   DFSSLDLHPDLLKNLATLGYQSMTPIQQLSLPAILSGKDVIGQGKTGSGKTAAFGLGLLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+    + +     +L PTRELA QVA    K  +  +    L +  G PF  Q   LE
Sbjct: 65  KLDVKSFKAQSI---VLCPTRELADQVATEIRKLARAIHNIKVLTLCGGAPFGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGRI +H  +G L + +I  LV+DEADRMLDMGF   I  I   +P  RQT
Sbjct: 122 HGVHIVVGTPGRIEEHLRKGTLKLGSITTLVLDEADRMLDMGFQDTIDEIIEKIPSKRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  +E+  ++E  +QNP    +    ST E          A  +       +LL 
Sbjct: 182 LLFSATFPNEIASIAERVMQNPT---MVEAPSTHEESTIKQYFYKANSADDRMTALRLLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ +IFCN K +  ++   L   GF   AIHG++DQR R + L  F   ++ ++V
Sbjct: 239 AKHKPESVLIFCNTKIDTQDVADELVYYGFYALAIHGDLDQRERDQALIRFSNKSVSVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++ +  E ++HRIGRTGRAGR G A TL    +   +DA+
Sbjct: 299 ATDVAARGLDIDALDMVVNFNIAHDPEVHVHRIGRTGRAGRSGIACTLYGDRETHKLDAL 358

Query: 361 EKLI--EKKVDWLNGDLSSLNPPLEK--IDIAQHNHARKNNPIPQKSTG 405
           E  I  ++  D L  D S L+  ++K  +   + +  +K    P    G
Sbjct: 359 ELDIDFDRYTDPLPSD-SYLDKLIKKPLMTTLKIDGGKKQKLRPGDIVG 406


>gi|67968237|dbj|BAE00180.1| VASA RNA helicase [Daphnia magna]
          Length = 779

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 108/358 (30%), Positives = 178/358 (49%), Gaps = 7/358 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + GL P ++  + ++GY+KPTP+Q  +I ++L + D+   A TG+GKTA++++P++ 
Sbjct: 348 SFEEAGLRPLLLQNIKNSGYIKPTPVQKASIAVILAKRDLIACAVTGSGKTAAYLVPVMN 407

Query: 62  ILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           IL +          ++ P  +I+ PTRELA Q+     K+  N  L   ++ GG     Q
Sbjct: 408 ILLEQGVAGASHGMLQKPEVVIVAPTRELAIQIHREACKFSYNSVLKSVIIYGGTVVNHQ 467

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L+ G ++L+ T GR+ D  +RG      +  L++DEADRMLDMGF P I+ + +   
Sbjct: 468 RTNLQAGCNILVATAGRLKDFLDRGIFDFTAVRFLILDEADRMLDMGFGPDIEKMVNHPT 527

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              + +      +       +          +   +             + Q SK+    
Sbjct: 528 MPPKGIRRVCMFSATFPDEVQALAATYMEDYIFVTTGIVGGTNPDVEQLFFQCSKRDKRA 587

Query: 236 QQLLQSQDTMK-NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           + +   QD      I+F + KK    +   L        +IHG+  Q  R + L +FK G
Sbjct: 588 KLMEVLQDLGDAKTIVFVDSKKTADFVAAFLCNNNLQSTSIHGDRLQSQREQALRDFKNG 647

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
              ++VA+++AARGLDI  V +V N+D+P   E Y+HR+GRTGR G  GK+ +    E
Sbjct: 648 VRNILVATNVAARGLDIAGVNYVVNYDLPTDIEEYVHRVGRTGRVGNIGKSISFFDDE 705


>gi|291237406|ref|XP_002738626.1| PREDICTED: HLA-B associated transcript 1-like [Saccoglossus
           kowalevskii]
          Length = 429

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 92/375 (24%), Positives = 165/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 49  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQ 108

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             A+  + F KY     + V      I  + Q  K    
Sbjct: 109 IEPVDGQVSVLVLCHTRELAFQIAKEYERFSKYMPTIKVGVFFGGINIKKDEQTLKNNCP 168

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L +    ++ +    +  +     +Q+I    P  +Q ++
Sbjct: 169 HIVVGTPGRLLALGRNKTLSLKHVKHFILDECDKMLEQLDMRRDVQDIFRQTPHEKQVMM 228

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ +++ + + F+Q+P  + V+  +         +        K   L        
Sbjct: 229 FSATLSKDIRPICKKFMQDPMEVYVDDETKLTLHGLQQYYCKLKDNEKNRKLFDL--LDV 286

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  ++Q  R+     FK+   +++VA+
Sbjct: 287 LEFNQVVIFVKSVQRCIALSQLLVEQNFPAIAIHRAMNQEERLARYQQFKDFQKRILVAT 346

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  +  Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 347 NLFGRGMDIERVNIVFNYDMPEDSNTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQ 406

Query: 362 KLIEKKVDWLNGDLS 376
              E  +  L  ++ 
Sbjct: 407 DRFEVNIGELPDEID 421


>gi|260800277|ref|XP_002595060.1| hypothetical protein BRAFLDRAFT_125765 [Branchiostoma floridae]
 gi|229280302|gb|EEN51071.1| hypothetical protein BRAFLDRAFT_125765 [Branchiostoma floridae]
          Length = 875

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 136/363 (37%), Positives = 203/363 (55%), Gaps = 4/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FA  G   +++  +  + Y +PTPIQ + IP+ L   D+ GIA+TG+GKTA+FV PM  
Sbjct: 237 SFAHFGFDEQLLHQIRKSEYSQPTPIQAQGIPVALSGRDIIGIAKTGSGKTAAFVWPMLV 296

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +K       P  LI  PTREL+ Q+    +++GK Y L+V    GG     Q K L
Sbjct: 297 HIMDQKELEPGDGPIGLICAPTRELSQQIYAEAKRFGKCYGLSVVAAYGGGSMWEQTKAL 356

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA++++CTPGR++D   +    +  +  LV DEADRM DMGF P +++I + V   RQ
Sbjct: 357 QLGAEIVVCTPGRLIDLVKKKATNLQRVTYLVFDEADRMFDMGFEPQVRSIANHVRPDRQ 416

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    ++++  + L +P ++         E ++       A   K   L ++ L
Sbjct: 417 TLLFSATFKKRIERLCRDILMDPIKVVQGDLGEANEDVQQIVEIFPAGPPKWQWLTRR-L 475

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               ++ + +IF  +K N   L  +L+ Q F    +HG++DQ  R K++S+FK+ TI +M
Sbjct: 476 VEFTSVGSVLIFVTKKANSEELASNLKAQDFEAGLLHGDMDQSERNKVISDFKKKTIPVM 535

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF-TLVAKEDIKHID 358
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG       TL A  D     
Sbjct: 536 VATDVAARGLDIPSIKTVVNYDVARDIDTHTHRIGRTGRAGNKVTDISTLKANSDNPLFQ 595

Query: 359 AIE 361
            IE
Sbjct: 596 LIE 598


>gi|168003567|ref|XP_001754484.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694586|gb|EDQ80934.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 704

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 125/390 (32%), Positives = 198/390 (50%), Gaps = 13/390 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA L LS +    + +  +V  T IQ   IP  L  HDV G A+TG+GKT +F+LP++ 
Sbjct: 58  DFAALPLSDRTQRGLKEHKFVHMTAIQRAAIPHALCGHDVLGAAKTGSGKTLAFLLPVVE 117

Query: 62  I-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                    V     +I+ PTRELA Q+ D   K GK+++++  LLIGG       K+  
Sbjct: 118 KLYRLKWGAVDGVGAIIISPTRELAGQIFDELRKVGKHHSISAGLLIGGRKGVDTEKETV 177

Query: 121 RGADVLICTPGRILDHFNRGKLLMN-NIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              ++L+CTPGR+L H +         +++LV+DEADR+LDMGF   +  I   +P  RQ
Sbjct: 178 MNLNILVCTPGRLLQHMDETPNFDCSQLQVLVLDEADRILDMGFSGTLNAILGQLPKERQ 237

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT T  ++ ++   L++P+ + V+  S+ A               +K  +L   +
Sbjct: 238 TMLFSATQTKSVKDLARLSLRDPEFLAVHAESAAATPARLQQTVMIVPLDEKMDMLWSFV 297

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQ 297
           ++    K  +   + K+ V  +  +  +    +    +HG + Q +RM     + E    
Sbjct: 298 KTHLQTKMLVFLSSCKQQVKFVHEAFRRLRPGIPLACLHGRMKQMARMATFYKYCESKHA 357

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+ A+D+AARGLD P V  V   D P     YIHR+GRT R    G +   +A  +   +
Sbjct: 358 LLFATDVAARGLDFPTVDWVLQVDCPEDVATYIHRVGRTARYTASGHSLLFLAPSEEPML 417

Query: 358 DAIE------KLI---EKKVDWLNGDLSSL 378
            A+E      +LI   ++KV  ++G L+ L
Sbjct: 418 AALEAAKIPVRLIKANKEKVQPVSGALAGL 447


>gi|325928093|ref|ZP_08189306.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
 gi|325541591|gb|EGD13120.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
          Length = 458

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 128/381 (33%), Positives = 188/381 (49%), Gaps = 6/381 (1%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F+ L LSP +   +   GY   TPIQ +++P +LQ  DV   A TG+GKTA+F L +
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  L+    R +                        G      V L  G           
Sbjct: 61  LQKLDPAVTRAQALVLC-PTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I       RQ
Sbjct: 120 AHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAGRCDKHRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT  D ++ ++   L+ P  I V    S  E  +  F        K  A L    
Sbjct: 180 SLLFSATFPDSIRTLARELLKEPVEITVEGADSAPEIDQQFFEVDPTYRQKAVAGLLL-- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ ++FCN +K V  +  SL++ GFS  A+HG+++QR R ++L  F   +  ++
Sbjct: 238 --RFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+HG A +LVA  +     A
Sbjct: 296 VASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARAQA 355

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           +E    + + W    L++  P
Sbjct: 356 LEAEQGQPLKWSRAPLATARP 376


>gi|316965399|gb|EFV50121.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
          Length = 1007

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 133/408 (32%), Positives = 211/408 (51%), Gaps = 25/408 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + G   +++  ++  GY +PTPIQ + IP+ LQ  DV G+A+TG+GKTA+F++P+L 
Sbjct: 583 SWLEAGFPTEILDVIMKIGYTEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLIPLLC 642

Query: 62  ILEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R     + P  +I+ PTRELA Q+ +   K+G    +    +IGG+  E Q  KL
Sbjct: 643 FVMIKREEDVDQGPYAVIMAPTRELAQQIEEEANKFGGPLGVRTVSVIGGLSREEQGFKL 702

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G +++I TPGR++D      L++N    +++DEAD+MLDMGF PY+QNI S +P T  
Sbjct: 703 RMGCEIVIATPGRLVDVLENRYLVLNQCTYVILDEADKMLDMGFEPYVQNILSYMPVTNL 762

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSS----------------------TAETI 217
                    ++    +    +  ++  + T +                         +  
Sbjct: 763 KPDTEEAEDEKALLNNFYSKKKFRQTVMFTATMSSAVERLARNYLRRPAVVYIGAIGKPT 822

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
           E      Y     +       +  +      IIF NQKK    L   LEK GF+ CA+HG
Sbjct: 823 ERVEQIVYMVSESEKRKKLVQILEKGIEPPIIIFVNQKKGADLLARGLEKLGFNPCALHG 882

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
              Q +R   L++ K+G+  ++VA+D+A RG+DI DV  V N+D+    E+Y HRIGRTG
Sbjct: 883 GKGQDARDYALASLKDGSKDILVATDVAGRGIDIKDVSLVLNYDMAKSIEDYTHRIGRTG 942

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEK-LIEKKVDWLNGDLSSLNPPLEK 384
           RAG+ GKA T + KED +    +++ L+E  V     +L++     +K
Sbjct: 943 RAGKSGKAITFLTKEDNQVFYDLKQLLLESPVSSCPAELANHPDAQKK 990


>gi|215788934|gb|ACJ69403.1| Vasa [Botryllus schlosseri]
          Length = 547

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 206/388 (53%), Gaps = 12/388 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L   V   VL +GY KPTP+Q  +IP+V    D+   AQTG+GKTA+F+LP+L+
Sbjct: 93  SFDDAKLPDTVGQNVLKSGYEKPTPVQKYSIPIVNNNRDLMACAQTGSGKTAAFLLPVLS 152

Query: 62  ILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            + +         +  + P+ +++ PTREL  Q+     K+ +   +   ++ GG    +
Sbjct: 153 GMFRNGLKSADSFSESQTPQAIVVGPTRELVNQIYIEARKFARGTMIQPVVVYGGTSVRS 212

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT--- 171
           Q   L RG ++LI TPGR+LD  +RGK+    +E +++DEADRMLDMGF P I+ +    
Sbjct: 213 QLANLSRGCNMLIATPGRLLDFIDRGKVSCECVEYIILDEADRMLDMGFEPEIRRLLGAP 272

Query: 172 -SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                 TR TL+FSAT  D++QK++  FL++            A +     +       K
Sbjct: 273 GMPDKNTRHTLMFSATSPDDIQKLAHEFLRDDFLFLTVGRVGGACSDVTQAMIQIDHSEK 332

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++ L     T    ++F + K+N   L     ++     +IHG+  QR R   L +
Sbjct: 333 RDKLMELLSDVPTTKARTLVFVDTKRNADFLATLPSQENLPTTSIHGDRQQREREMALVD 392

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK GT  +++A+ +AARGLDIP V HV N+D+P+  + Y+HRIGRTGR G  G A +   
Sbjct: 393 FKNGTCPILIATSVAARGLDIPKVEHVINYDLPSEIDEYVHRIGRTGRCGNLGTATSFYD 452

Query: 351 K-EDIKHIDAIEKLIEKKVDWLNGDLSS 377
             +D     ++ K++      +   L +
Sbjct: 453 DSKDGTLARSLVKVLSDAQQEVPDWLET 480


>gi|168180351|ref|ZP_02615015.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|168185059|ref|ZP_02619723.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|226949022|ref|YP_002804113.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           botulinum A2 str. Kyoto]
 gi|237795189|ref|YP_002862741.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           botulinum Ba4 str. 657]
 gi|182668710|gb|EDT80688.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|182671890|gb|EDT83851.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|226842744|gb|ACO85410.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A2 str. Kyoto]
 gi|229262468|gb|ACQ53501.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Ba4 str. 657]
          Length = 421

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 115/416 (27%), Positives = 214/416 (51%), Gaps = 14/416 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L+PK+V  +       PT IQ K IPL ++  D+ G ++TGTGKT +++LP+  
Sbjct: 4   SFDTLNLNPKLVQGLKKLNINIPTEIQAKAIPLAMENKDIIGQSETGTGKTLAYLLPIFE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNKKL 119
            +   +  ++     IL PT ELA Q+ +  +    N N+      +IG    + Q +KL
Sbjct: 64  KITTEKREMQAI---ILAPTHELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +++ +PGRIL+   + K+  + ++ +VIDE D++LD   +  ++ +       RQ
Sbjct: 121 KEKPHIIVGSPGRILELIKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT+T+    ++++ +++ + ++V   ++  E I+H ++       ++   + + L
Sbjct: 181 LMLFSATITESTLNIAKDLMKDSEVVKVKEKNTVNENIKHLYITGEH---RERIEILRKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    K  I+F N+ + +      L+        I+G  ++  R K L +F+ G +Q++
Sbjct: 238 IAATNPKRAIVFINRNEEIELTTLKLQYHKIKAYGIYGAAEKEQRKKALEDFRSGKVQIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V+SDL+ARGLD+ D+ H+FN D+P   + Y+HR+GRTGRA + G A +++ +++   I  
Sbjct: 298 VSSDLSARGLDVKDITHIFNLDLPENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRK 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            EK     ++       +L      I       ++  +     S   D  KK  SS
Sbjct: 358 YEKEFNINIEEKKIYKGTL------ISSKGERSSQPKSKNKSTSAHKDNNKKKRSS 407


>gi|119179097|ref|XP_001241172.1| hypothetical protein CIMG_08335 [Coccidioides immitis RS]
 gi|118597485|sp|Q1DMX8|PRP28_COCIM RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
          Length = 817

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 119/435 (27%), Positives = 201/435 (46%), Gaps = 37/435 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + GL  +++  +   GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 378 SWGESGLPKRLLEIIDKVGYKDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 437

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                    E    +   P  +IL PTRELA Q+ +   K+       V  ++GG   E 
Sbjct: 438 YIAELPRLDEFEWRKSDGPYAIILAPTRELAQQIENEARKFCNPLGFNVVSIVGGHSLEE 497

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q+  L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 498 QSFSLRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 557

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA----------- 223
           P + +                       ++  + T +  +                    
Sbjct: 558 PVSNEKPDTEEAEDARAMSQHLGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 617

Query: 224 -------------TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
                          +   K+   L  +L S +     I+F N K+N   +   +++ G+
Sbjct: 618 IGEAVDTVEQRVEFISGEDKRKKRLADILASGEFRPPIIVFVNIKRNCDAVARDIKQMGY 677

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y 
Sbjct: 678 SSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYT 737

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ 
Sbjct: 738 HRIGRTGRAGKSGVAITFLGNEDADVMYDLKQML------MKSSISRVPEELRKHEAAQS 791

Query: 391 NHARKNNPIPQKSTG 405
              +      +   G
Sbjct: 792 KPTKAGGGQKRLDEG 806


>gi|154496153|ref|ZP_02034849.1| hypothetical protein BACCAP_00437 [Bacteroides capillosus ATCC
           29799]
 gi|150274708|gb|EDN01772.1| hypothetical protein BACCAP_00437 [Bacteroides capillosus ATCC
           29799]
          Length = 636

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 161/395 (40%), Positives = 234/395 (59%), Gaps = 9/395 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGL+  ++ A+ + GY KP+PIQ K IP  L   DV G AQTGTGKT +F  P+L
Sbjct: 1   MTFRELGLTQSILKALAELGYEKPSPIQEKAIPPALAGRDVLGCAQTGTGKTCAFAAPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L       R  R+LIL PTRELA Q+ ++FE YGK+  L  A++ GG+  + Q  KL+
Sbjct: 61  QRLGGDIPAGRPIRSLILTPTRELALQIQESFEAYGKHLPLRSAVIFGGVGQQPQVDKLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+LD   +G + ++ +EI V+DEADRMLDMGF+  ++ +  L+P  +QT
Sbjct: 121 KGVDILVATPGRLLDLQGQGFVDLSRLEIFVLDEADRMLDMGFLHDVRRVLKLLPAVKQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSATM  E+  +    L+NP ++ V+  SS  E I+            K         
Sbjct: 181 LFFSATMPPEVMDLVNGLLKNPVKVAVDPVSSPVEIIDQSVYLVDKGNKTKLLAWL---V 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
               +KN I+F   K     +   L K G +  AIHGN  Q +R + L++FK G ++ +V
Sbjct: 238 EGLDVKNAIVFTRTKHGANKVAGDLVKAGITAAAIHGNKSQTARQQALADFKAGKVRCLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++ HVFN+++P   E Y+HRIGRTGRAGR G A +     + +++  I
Sbjct: 298 ATDIAARGLDIEELSHVFNYNLPEVPETYVHRIGRTGRAGRGGTAVSFCDFGEQEYLKDI 357

Query: 361 EKLIEKKVDWLNGDLSSLNP-PLEKIDIAQHNHAR 394
           EKLI +KV      ++  NP P+E  + ++    R
Sbjct: 358 EKLIGRKVP-----VARNNPWPMEVFEASRDAKGR 387


>gi|145351197|ref|XP_001419971.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580204|gb|ABO98264.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 575

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 118/405 (29%), Positives = 200/405 (49%), Gaps = 16/405 (3%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK-- 65
           L  +++ A+   GY KP+PIQ+ +IP+ L + DV GIA+TG+GKT +FV+PML  + +  
Sbjct: 162 LPQEILRAIAQVGYEKPSPIQMASIPIGLLKRDVIGIAETGSGKTCAFVVPMLAHIMQLP 221

Query: 66  ---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                     P  LI+ PTRELA Q+ +   K+ +  +  V L++GG   E Q  KL +G
Sbjct: 222 KMTDEIAAHGPYALIMAPTRELAQQIEEETLKFAQYLDYRVGLVVGGQSIEDQGFKLRKG 281

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++L+ TPGRI+D   R   +++    +V+DEADRM+DMGF P +  +   +        
Sbjct: 282 VEILVGTPGRIIDVIERRYTVLSQCNYIVLDEADRMIDMGFEPQVVAVMEAMGSGNLKPE 341

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS- 241
             A   D           +       +       +        +   K+  +     +  
Sbjct: 342 DEAEELDGQALEQGGPTSSNVERLARSYLRNPAVVTIGSAGKTSDLIKQEIIWVSRNERD 401

Query: 242 --------QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                   +      I+F N K++V  + +   + G+S  +IHG   Q  R + L  FK 
Sbjct: 402 SKFELVLSRHPNTQAIVFVNAKRSVDAVANLCYRLGYSCASIHGGKSQDQREESLRGFKA 461

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   ++VA+D+A RG+D+  +  V N+++P+  ENY HRIGRTGRAGR G A + +  +D
Sbjct: 462 GDYDILVATDVAGRGIDVKGIDLVVNYELPHTIENYTHRIGRTGRAGRKGTAVSFLTSDD 521

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
              +  +++L+ +  + +   L+  N    ++   + +  R+ N 
Sbjct: 522 RDIMYELKELLIESKNHVPDALA--NHEAARVKPQRDDRGRRMNR 564


>gi|213409820|ref|XP_002175680.1| ATP-dependent RNA helicase Uap56 [Schizosaccharomyces japonicus
           yFS275]
 gi|212003727|gb|EEB09387.1| ATP-dependent RNA helicase Uap56 [Schizosaccharomyces japonicus
           yFS275]
          Length = 434

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 93/377 (24%), Positives = 154/377 (40%), Gaps = 5/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D+G+  P+ +Q   IP  +   DV   A++G GKTA FVL  L  
Sbjct: 53  FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
           +E     V +                   F KY       +    +      EA   K  
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGVNIKQDMEAFKDKST 172

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+            +   + N    ++ +    +  +     IQ +    P  +Q 
Sbjct: 173 SPHIVVATPGRLNALVREKILRVNNVKHFVLDECDKLLEAVDMRRDIQEVFRATPPQKQV 232

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT+++E++ + + F+QNP  I V+  +                  K        L 
Sbjct: 233 MMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLH--GLQQHYVKLDEKAKNRKLNDLL 290

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF         L   L +  F    IHG + Q  R+K    FK+   ++ V
Sbjct: 291 DSLEFNQVVIFVKSVSRANALDRLLRECSFPSICIHGGLPQDERIKRYKAFKDFDKRICV 350

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           A+D+  RG+DI  V  V N+D+P+  ++Y+HR+GR GR G  G A T V   ED + +D 
Sbjct: 351 ATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFVTTDEDSQVLDK 410

Query: 360 IEKLIEKKVDWLNGDLS 376
           I++  E  +  L  ++ 
Sbjct: 411 IQERFEVNITELPDEID 427


>gi|153939716|ref|YP_001391033.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum F str.
           Langeland]
 gi|152935612|gb|ABS41110.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. Langeland]
 gi|295319089|gb|ADF99466.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. 230613]
          Length = 421

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 115/416 (27%), Positives = 214/416 (51%), Gaps = 14/416 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L+PK+V  +       PT IQ + IPL ++  D+ G ++TGTGKT +++LP+  
Sbjct: 4   SFDTLNLNPKLVQGLKKLNINIPTEIQAEAIPLAMENKDIIGQSETGTGKTLAYLLPIFE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNKKL 119
            +   +  ++     IL PT ELA Q+ +  +    N N+      +IG    + Q +KL
Sbjct: 64  KITTEKREMQAI---ILAPTHELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +++ +PGRIL+   + K+  + ++ +VIDE D++LD   +  ++ +       RQ
Sbjct: 121 KEKPHIIVGSPGRILELIKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT+T+    ++++ +++ + ++V   ++  E I+H ++       ++   + + L
Sbjct: 181 LMLFSATITESTLNIAKDLMKDSEVVKVKEKNTVNENIKHLYITGEH---RERIEILRKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    K  I+F N+ + +      L+        I+G  ++  R K L +F+ G +Q++
Sbjct: 238 IAATNPKRAIVFINRNEEIELTTLKLQYHKIKAYGIYGAAEKEQRKKALEDFRSGKVQIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V+SDL+ARGLD+ DV H+FN D+P   + Y+HR+GRTGRA + G A +++ +++   I  
Sbjct: 298 VSSDLSARGLDVKDVTHIFNLDLPENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRK 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            EK     ++       +L      I       ++  +     S   D  KK  SS
Sbjct: 358 YEKEFNINIEEKKIYKGTL------ISSKGERSSQPKSKNKSTSAHKDNNKKKRSS 407


>gi|328790612|ref|XP_003251437.1| PREDICTED: eukaryotic initiation factor 4A-like [Apis mellifera]
          Length = 548

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L  +++  +   G+ KP+ IQ + I   ++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 176 NFDEMNLKEELLRGIYAYGFEKPSAIQQRAILPCIRGHDVIAQAQSGTGKTATFSISILQ 235

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G   +      IGG       +KL++
Sbjct: 236 QIDTTIKE---CQALILAPTRELAQQIQKVVIALGDFMHAECHACIGGTNVREDMRKLDQ 292

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D  +R  L  ++I++ V+DEAD ML  GF   I ++  L+P   Q +
Sbjct: 293 GVHIVVGTPGRVYDMISRRALRASSIKLFVLDEADEMLSRGFKDQIHDVFKLLPHEVQVI 352

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++  VS+ F++NP RI V     T E I+  F+    +  K   L       
Sbjct: 353 LLSATMPSDVLDVSKCFMRNPIRILVKKEELTLEGIKQFFIYVEREEWKFETLCDL--YD 410

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L  S+  + F+V A+HG+++Q+ R  I+  F+ G+ ++++ 
Sbjct: 411 TLSITQAVIFCNTRRKVDWLTESMRTRDFTVSAMHGDMEQKERDLIMRQFRTGSSRVLIT 470

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A  LV  +D + +  IE
Sbjct: 471 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINLVTDDDKRTLKDIE 530

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 531 QFYNTSIEEMPMNVADL 547


>gi|330812848|ref|XP_003291329.1| hypothetical protein DICPUDRAFT_155915 [Dictyostelium purpureum]
 gi|325078509|gb|EGC32157.1| hypothetical protein DICPUDRAFT_155915 [Dictyostelium purpureum]
          Length = 1031

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 208/368 (56%), Gaps = 4/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ ++L  G+  PTPIQ +TIPL+L+ +DV G+A+TG+GKT +FV+PM+ +
Sbjct: 221 FQSMGLNKLLLRSILKKGFNVPTPIQRRTIPLILEGNDVVGMARTGSGKTGAFVIPMVQM 280

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   + V   R++IL PTRELA Q     + + +  NL   L++GG   E Q   L R 
Sbjct: 281 LQ-EHSTVVGVRSVILSPTRELAIQTFKVVKDFTQGTNLRTILIVGGDSMEEQYDDLARN 339

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++ H     + ++ ++ +V DEADR+ +MGF   +  I S +   RQTLL
Sbjct: 340 PDIIIATPGRLMHHLQETGMSLSKVKYIVFDEADRLFEMGFNEQLTEILSKLSENRQTLL 399

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L +     L NPK + ++T +  +E +   F            L        
Sbjct: 400 FSATLPSLLVEFVRAGLNNPKLVRLDTDTKISENLALSFFTVRHDEKLGVLLYLLKDIIF 459

Query: 243 DTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIF   K +V  +   LE+ G +   IHG +D  +R   L+ F+   + ++
Sbjct: 460 ADRTKKSPTIIFTATKYHVEFIHILLERTGITSTYIHGYLDPVARKINLAKFRTNQVSIL 519

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DLAARG+DIP + +V NFD P + + ++HR+GR  RAG+ G A++LV+ +++ ++  
Sbjct: 520 IVTDLAARGIDIPLLDNVINFDFPPKEKIFVHRVGRVARAGKKGIAYSLVSPDEVPYMID 579

Query: 360 IEKLIEKK 367
           +   + +K
Sbjct: 580 LHLYLGRK 587


>gi|330803884|ref|XP_003289931.1| hypothetical protein DICPUDRAFT_154383 [Dictyostelium purpureum]
 gi|325079973|gb|EGC33549.1| hypothetical protein DICPUDRAFT_154383 [Dictyostelium purpureum]
          Length = 501

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 107/415 (25%), Positives = 192/415 (46%), Gaps = 3/415 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL+P ++ +     +  P+ IQ  TIP ++   D+   A+TG+GKTASF +P+L +
Sbjct: 7   FESLGLAPWLIRSCKQLNFKNPSNIQYNTIPEIINGRDIIASAKTGSGKTASFAIPILNL 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +    V      +L PTRELA Q+A+ F   G   N+ V+ +IGGI    Q   L++ 
Sbjct: 67  LSEDPYGVFAV---VLTPTRELAVQIAEQFSAIGAPMNVQVSTVIGGIDTVKQALILDKR 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+  H   G  +       ++ +    L                       
Sbjct: 124 PHIIVATPGRLASHLTNGLKIALKFCKFLVLDEADRLLGEDFELEIASILEYLPPPTQRQ 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
                      + +    +     +   +S  +T++          ++        L  +
Sbjct: 184 TLLFSATMTNNLKKLESISLNSPFIFEDNSKYDTVDTLKQEYIYMPAQAKDCYLVYLLKK 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              ++ I+F N   +V  +   L K      ++H  +DQ++R+  L  FK G +++++A+
Sbjct: 244 HIGQSVIVFINNCYSVEAVKGMLNKLDIPAVSLHSFLDQKARLSALKVFKSGKVKVLIAT 303

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+A+RGLDIPDV  V N+ + N +++YIHR+GRT R G+ G+A + +   D++ I  IE 
Sbjct: 304 DVASRGLDIPDVEMVINYKLSNSSKDYIHRVGRTARFGKSGRAISFITPHDVQLIKNIEL 363

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           +I+K+++    D   +   L++   A+       + I       +RR +    QK
Sbjct: 364 VIKKELELYKTDDDEVFRHLKESSTARKIVEVHLDEIEFGVKQKERRAERNELQK 418


>gi|285019640|ref|YP_003377351.1| ATP-dependent RNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283474858|emb|CBA17357.1| putative atp-dependent rna helicase protein [Xanthomonas
           albilineans]
          Length = 570

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 120/374 (32%), Positives = 202/374 (54%), Gaps = 6/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L P ++  +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++
Sbjct: 9   LTFSAFDLQPALLAGLEGAGFTRCTPIQALTLPVALPGRDVAGQAQTGTGKTLAFLVAVM 68

Query: 61  T----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                       +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q 
Sbjct: 69  NRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQR 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIE-ILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L++G DV+I TPGR++D+  + K++  +   I V+DEADRM D+GFI  I+ +   +P
Sbjct: 129 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                     + T   + +   +    +  ++   + +  T        Y    ++   L
Sbjct: 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESI-TAARVRQRIYFPADEEKLTL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L S+      ++F N K  V  +  +LE+ G+ V  + G++ Q+ R  +L+ F++G 
Sbjct: 248 LLGLLSRSEGARTMVFVNTKAFVERVARALERNGYRVGVLSGDVPQKKRETLLNRFQKGQ 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++V +D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 308 LEILVVTDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367

Query: 356 HIDAIEKLIEKKVD 369
            +  IE  IE+K+ 
Sbjct: 368 SLPDIEAYIEQKIP 381


>gi|209808970|ref|YP_002264508.1| ATP-dependent RNA helicase DbpA [Aliivibrio salmonicida LFI1238]
 gi|208010532|emb|CAQ80900.1| ATP-independent RNA helicase (DEAD/DEAH box helicase) [Aliivibrio
           salmonicida LFI1238]
          Length = 462

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 129/364 (35%), Positives = 200/364 (54%), Gaps = 7/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L+P ++  +   GY + TPIQ +++P +L+  DV    +TG+GKTA+F L +L 
Sbjct: 5   SFSSLNLNPYLLQNLDTLGYTEMTPIQAQSLPFMLEGKDVIAQGKTGSGKTAAFGLGLLA 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+  R RV+   +L+L PTRELA QVA    K  ++ +    L +  G+PF  Q   LE
Sbjct: 65  NLDVKRFRVQ---SLVLCPTRELADQVAVEIRKLARSIHNIKVLTLCGGVPFGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ +H  +G L ++N+   V+DEADRML+MGF   I  +    P  RQ 
Sbjct: 122 HGAHIIVGTPGRVEEHLRKGYLNLDNLNTFVLDEADRMLEMGFQDAIDLVLDHAPAKRQN 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT   +++ +++  + NP    +       E              +      Q+L 
Sbjct: 182 LLFSATFPPQIKSIADRIMNNPI---MTKAEDKIEETSITQHFYKVDDFEDRLKALQILL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   ++ +IFCN K+    +   L    FSV A+HG+++QR R K L  F   +  ++V
Sbjct: 239 LKHRPESTVIFCNTKRVTQEVADELRHFDFSVTALHGDLEQRDRDKALVRFANKSTSILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRTGRAG+ G A +L   ++      I
Sbjct: 299 ATDVAARGLDIDSLDAVINFELSRDPEVHVHRIGRTGRAGKKGIALSLFNNKETNSFAQI 358

Query: 361 EKLI 364
           E  +
Sbjct: 359 EDYM 362


>gi|145349996|ref|XP_001419411.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579642|gb|ABO97704.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 394

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 118/361 (32%), Positives = 191/361 (52%), Gaps = 9/361 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +    Y KP+PIQ + IP++L   DV G A+TG+GKTA+F +PM+ 
Sbjct: 33  SFEDMTLVRDIMADIRYREYDKPSPIQAQAIPVILSGRDVLGCAETGSGKTAAFSIPMIQ 92

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
               +    +   P  +++ PTRELA Q+    + + ++      A+++GG     Q   
Sbjct: 93  HALNQAPLRQGDGPYAIVMAPTRELAQQIEAEAKTFTRSSKGFRTAIIVGGTNMSEQRGA 152

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G  +++ TPGR++DH  +G   ++ +  +V+DEADRMLDMGF P I+ +   +P   
Sbjct: 153 LRSGVQIVVATPGRLIDHLQQGNTNLSRVSFVVLDEADRMLDMGFEPQIREVLMNLPKPH 212

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS------KKC 232
           QTLLFSATM  E++ ++ ++L  P +++V T S+    +                     
Sbjct: 213 QTLLFSATMPSEVEALASDYLHKPVKVKVGTTSAPTANVSQHLEKVVDAEKVDRLVTMLI 272

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
              ++ ++    M   +IF  +K     +   L  +     A+HG   Q  R   L ++K
Sbjct: 273 GEQREAMKLGQDMPMTVIFVERKNRADEIAELLNAENVPAAALHGGRSQGEREAALHDYK 332

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+D+AARGLD+  V HV N D+P   E+Y+HRIGRTGRAG  G++ +     
Sbjct: 333 TGRCSVLVATDVAARGLDVKGVAHVVNLDLPRNFEDYVHRIGRTGRAGMSGRSTSFYTDR 392

Query: 353 D 353
           D
Sbjct: 393 D 393


>gi|225430261|ref|XP_002285072.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 428

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 160/376 (42%), Gaps = 3/376 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D+G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 49  FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 108

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V                   + F  Y  +  + V      I       K E  
Sbjct: 109 IEPVTGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 168

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L N    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 169 HIVVGTPGRILALARDKDLALKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 228

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  I V+  +              ++  K        L   
Sbjct: 229 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNR--KLNDLLDA 286

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L +  F    IH  + Q  R+     FKEG  +++VA+
Sbjct: 287 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMPQEERLTRYKGFKEGHKRILVAT 346

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKHIDAIE 361
           DL  RG+DI  V  V N+D+P+ A+ Y+HR+GR GR G  G A T V+   D   ++ ++
Sbjct: 347 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQ 406

Query: 362 KLIEKKVDWLNGDLSS 377
           +  E  +  L   + +
Sbjct: 407 ERFEVDIKELPEQIDT 422


>gi|224054552|ref|XP_002298317.1| predicted protein [Populus trichocarpa]
 gi|222845575|gb|EEE83122.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 116/389 (29%), Positives = 191/389 (49%), Gaps = 5/389 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLS      + + G+   T IQ + IP +L   DV G A+TG+GKT +F++P + 
Sbjct: 89  SFDSLGLSEATRKTIQEMGFENLTQIQARAIPPLLVGKDVLGAARTGSGKTLAFLIPAVE 148

Query: 62  ILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L       R     +++ PTRELA Q     +   K ++ T+ L+IGG     + ++L 
Sbjct: 149 LLHNVHFAPRNGTGVVVICPTRELAIQTHAVAKDLLKYHSQTLGLVIGGAARRGEAERLV 208

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G ++L+ TPGR +    N    +  N++ L IDEADR+L+  F   ++ I  L+P  RQ
Sbjct: 209 KGVNLLVATPGRLLDHLQNTKGFIYKNLKCLTIDEADRILEANFEEEMKQIIKLLPKARQ 268

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT T +++ ++    Q            T  T E          S K  +L    
Sbjct: 269 TALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFVLLYSF 328

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  ++F +   +V      L         IHG   Q+ R     +F +    ++
Sbjct: 329 FKRNLSKKVMVFFSSCNSVKFHADLLRYIQVECFDIHGKQKQQKRTSTFFDFCKAEKGIL 388

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHID 358
           + +D+AARGLDIP V  +  FD P+  + YIHR+GRT R  G  G A   +  E+++ + 
Sbjct: 389 LCTDVAARGLDIPAVDWIVQFDPPDEPKEYIHRVGRTARGEGAKGNALLFLIPEELQFLR 448

Query: 359 AIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            ++  K+  K+ ++    L+++   LEK+
Sbjct: 449 YLKAAKVPVKEYEFDQKKLANVQSQLEKL 477


>gi|85711185|ref|ZP_01042245.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
 gi|85695098|gb|EAQ33036.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
          Length = 404

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 119/371 (32%), Positives = 190/371 (51%), Gaps = 5/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           D+ +L L   ++  +  AG  KP  +Q   +P  +  HD+   + TGTGKT +F+LP + 
Sbjct: 4   DWQELELDDALISVLKAAGLNKPAKVQQAALPAAMDGHDLLISSPTGTGKTLAFLLPVLQ 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++  R +    R LIL PTRELA Q+    E +     L+  ++ GG+ + +Q  +LE
Sbjct: 64  HMMDFPRKQPGAARALILAPTRELAEQIYQQAEMFRALTELSSVVVTGGVNYGSQLSRLE 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPFTRQ 179
           +  D++I TPGR+LD     +  +  +E LVIDEADRMLDMGF   +++I          
Sbjct: 124 QSHDIVIATPGRLLDLLEAEQYELEAVEWLVIDEADRMLDMGFKGVVKDIALHARNRQHA 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L  +   +D ++  S   L  P+ IEV  P      I            K+      + 
Sbjct: 184 ILCSATIESDGVKAFSHTLLNEPELIEVTPPKRERGKIIEHAYLADTDDHKR---QLLMA 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      I+F   ++ V  L   L+ Q   V  + G++    R + +  FK     ++
Sbjct: 241 ILKQHSGRSIVFARTRERVQALASFLQSQDVPVMFLRGDLPHAERQQKIIEFKRRDNAVL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI D+  V N+D+P +A+ Y+HRIGRT RAG+ G A +LV   D   +  
Sbjct: 301 VATDVASRGLDIDDIKLVINYDLPKQADVYVHRIGRTARAGQKGLAISLVEAHDALLLGK 360

Query: 360 IEKLIEKKVDW 370
           IE+ +E ++D 
Sbjct: 361 IERYMEHRLDR 371


>gi|307178480|gb|EFN67169.1| Spliceosome RNA helicase Bat1 [Camponotus floridanus]
          Length = 425

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 90/375 (24%), Positives = 167/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 45  FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 104

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY  +  + V      I  + +  K    
Sbjct: 105 LELTENQVYVLVMCHTRELAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEVLKTVCP 164

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +     +   L +    ++ +    +  +     +Q I    P ++Q ++
Sbjct: 165 HIVVGTPGRILALVRTKKLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHSKQVMM 224

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  + V+  +               +  K   L +      
Sbjct: 225 FSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLNGLQQHYVKLKENEKNKKLFEL--LDV 282

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F    IH  + Q  R+     FK+   +++VA+
Sbjct: 283 LEFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVAT 342

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A TLV+ E D K ++ ++
Sbjct: 343 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITLVSDESDAKILNDVQ 402

Query: 362 KLIEKKVDWLNGDLS 376
           +  +  +  L  ++ 
Sbjct: 403 ERFDVNITELPDEID 417


>gi|198474199|ref|XP_001356589.2| GA10248 [Drosophila pseudoobscura pseudoobscura]
 gi|198138291|gb|EAL33653.2| GA10248 [Drosophila pseudoobscura pseudoobscura]
          Length = 828

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 133/436 (30%), Positives = 219/436 (50%), Gaps = 40/436 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + G  P+++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L+
Sbjct: 401 SWNESGFPPEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLS 460

Query: 62  ILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            ++            + P  +I+ PTRELA Q+ +   K+G+   +   +++GG+  E Q
Sbjct: 461 WIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETIKFGQPLGIRTVVVVGGLSREEQ 520

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 521 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 580

Query: 176 -------------------------FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
                                      RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 581 VTNLKPDTEEAEDENKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPSTVYIGSM 640

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               E  E           +K  +     +    +   IIF NQKK    L   LEK G+
Sbjct: 641 GKPTERTEQIVYMMGENDKRKKLMEILSRKIDPPV---IIFVNQKKGADVLAKGLEKLGY 697

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           + C +HG   Q  R   L+  K G   ++VA+D+A RG+DI DV  V N+D+    E+Y 
Sbjct: 698 NSCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYT 757

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A + V K+D      +++ +          +S+  P L     AQH
Sbjct: 758 HRIGRTGRAGKTGCAISFVTKDDSGLFYDLKQCV------TASPVSTCPPELTNHPEAQH 811

Query: 391 NHARKNNPIPQKSTGF 406
                     ++   F
Sbjct: 812 KPGTVVTKKRREEKIF 827


>gi|195490088|ref|XP_002092996.1| GE21030 [Drosophila yakuba]
 gi|194179097|gb|EDW92708.1| GE21030 [Drosophila yakuba]
          Length = 827

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 121/431 (28%), Positives = 218/431 (50%), Gaps = 3/431 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   GY  PTPIQ KTIPL+L+  DV  +A+TG+GKTA F++P+   
Sbjct: 41  FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++        R LIL PTRELA Q     ++ G+   L   L++GG   ++Q   +   
Sbjct: 101 LQRREPTKGA-RALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHTC 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR L       L +N+IE +V DEADR+ +MGF   +      +P +RQT++
Sbjct: 160 PDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQTVM 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L +P  I ++  S   + +            +  AL+  L    
Sbjct: 220 FSATLPKLLVEFARAGLNDPVLIRLDVESKLPDAL-ALKFLYCRPDDRYTALVVLLKYVI 278

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   + +V  + + L + G S  +++ ++D  +R    + F    + +++ +
Sbjct: 279 PVESQTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIVT 338

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP +  V N   P + + ++HR+GR  RAGR G A+++V+ +D  H+  +  
Sbjct: 339 DVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLLDLHL 398

Query: 363 LIEKKVDWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
            + +  +  +   L ++   L + +       +K++ I       +   K Y S +    
Sbjct: 399 FLNRPFNIHDSSALGTIPQDLLEEEHLTVTDIKKSHHIAGVLRTSENAYKKYLSSRPVAS 458

Query: 422 LKESEKISKLQ 432
              + ++ K++
Sbjct: 459 TDANARVKKIK 469


>gi|169844518|ref|XP_001828980.1| ROK1 [Coprinopsis cinerea okayama7#130]
 gi|116510092|gb|EAU92987.1| ROK1 [Coprinopsis cinerea okayama7#130]
          Length = 574

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 108/440 (24%), Positives = 194/440 (44%), Gaps = 15/440 (3%)

Query: 1   MDFADLG----LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFV 56
           + F +L     L P++   +   GY  PT IQ   IP++L+  D+  I+ TGTGKT +++
Sbjct: 130 LRFEELKERYSLPPQLFNNLAKNGYHTPTAIQSAGIPVLLESRDLAAISPTGTGKTLAYL 189

Query: 57  LPMLT------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
           LP+             ++  +  R +++ PTRELA Q+ +   K  +     + L     
Sbjct: 190 LPLFARLGAPLHQTHDQSAGKGVRAVVVAPTRELAHQIYNECLKLAQGRKWRITLFSKAT 249

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
                 K++    D+++ TP R++     GK  + N+  LV+DEADR+LD  F+   + +
Sbjct: 250 ASTLATKEVRDKTDIIVSTPLRLVAAVQEGKFELENVRYLVLDEADRLLDTEFLEQTEEL 309

Query: 171 TSLVPFTRQTL-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
            +    +R    +FSAT+   ++K++ + LQ+P R+ V    +    I           S
Sbjct: 310 VASCTHSRLQKAIFSATLPAGVEKIAMDMLQDPIRLVVGLKDTPLPLISQSLTYVADDGS 369

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K    L   L         +   +Q +        L     +V  +H  +  + R  +++
Sbjct: 370 K-LPSLLTYLAQPYNPPVLVFTSSQPRATSLAEELLLNNIKNVDCLHAGMTNKEREDVIT 428

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
             ++G   +++ +++ ARG+D   V  V N+D P   ++Y+HRIGRTGRAGR GKA T  
Sbjct: 429 RMRKGETWILITTEVMARGMDFKGVREVINYDFPTSVQSYVHRIGRTGRAGREGKAVTFF 488

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
             ED   +  I  +I +    +   +  L  P +   I +    +   P    +     R
Sbjct: 489 TNEDAPFLKIIANVILQSGSQVPEWILKLPKPSK---IKRRLMGKIKRPEIVNNARRLGR 545

Query: 410 KKNYSSQKSHIPLKESEKIS 429
           ++    +      K  +   
Sbjct: 546 REAIKKRDMIAASKRRKAKE 565


>gi|281201459|gb|EFA75669.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 751

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 133/419 (31%), Positives = 213/419 (50%), Gaps = 28/419 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   +   +  A Y KPTP+Q   +P++++  D+   AQTG+GKTA+F+ P+++
Sbjct: 286 SFMDIDLGDVLFKNIKYAKYTKPTPVQKSALPIIMKGRDLMACAQTGSGKTAAFLFPIIS 345

Query: 62  ------------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                           G  R   PR L+L PTRELA Q+ D   K+     +T  ++ GG
Sbjct: 346 GILLDGAPEPLAAYRPGVPRPVHPRALVLAPTRELALQIYDEASKFSYGSPVTSVVVYGG 405

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q  +L+RG D+L+ T GR++D  +RG++ + +++ LV+DEADRMLDMGF P I+ 
Sbjct: 406 AEISHQIAELDRGCDILVATTGRLVDLLSRGRVSLAHVKYLVLDEADRMLDMGFEPQIRQ 465

Query: 170 ITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I               +FSAT    +Q ++ +FL N   ++V    +T           Y
Sbjct: 466 IVVDNDMPGNRDRQTLMFSATFPKPIQNLASDFLNNYIFLKVGVIGTTQNIT---QRIEY 522

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            Q  +K + L   L +  +    +IF   K+   +L H L  +GF+   IHG++ Q  R 
Sbjct: 523 VQDDEKNSYLLDFLSTLKSDGLTLIFVETKRLCDSLTHYLNTKGFASTCIHGDLSQYERE 582

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L++F+      +VA+D+A+RGL IP+V +V NFD+P     Y+HRIGRTGRAG+ G A
Sbjct: 583 SALNSFRTNQTPYLVATDVASRGLHIPNVLYVINFDLPTDIHVYVHRIGRTGRAGKKGFA 642

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
            +   + +      + +L+ K    +                  +++++  N  PQKS 
Sbjct: 643 ISFYNERNKSLSTDLLQLMRKSNQEVPDWFE---------RTVSYSYSKPKNTPPQKSR 692


>gi|68071817|ref|XP_677822.1| RNA helicase [Plasmodium berghei strain ANKA]
 gi|56498080|emb|CAH95521.1| RNA helicase, putative [Plasmodium berghei]
          Length = 499

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 118/371 (31%), Positives = 196/371 (52%), Gaps = 8/371 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L +  +++ ++ + G+ KPT IQ K +PL+ Q+ D+ G+++TG+GKTA F++P+L 
Sbjct: 94  SFSQLNICEEILQSIQELGWEKPTLIQQKVLPLMFQKRDIIGLSETGSGKTACFIIPILQ 153

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN-KKLE 120
            L+    + +    LI+ PTREL  Q+A N +  G N  + +  + GG+    Q+    +
Sbjct: 154 ELKL---KKQNFFALIISPTRELCIQIAQNAQALGSNLLINICTIFGGVDIVTQSLNLAK 210

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      +    N     + N++ LV DEAD++L + F   I  +  ++P  R T
Sbjct: 211 KPNIIISTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSLDFESSINKLLLILPKNRIT 270

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT  + K+ +  L+NP +IEV+   ST +T+   ++       K        L 
Sbjct: 271 FLFSATMTKSVAKLKKTSLKNPIKIEVSNKYSTVKTLIENYIFLPL---KYKYTYLCSLC 327

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T KN IIF N       L       G     +HG + Q  R+  L+ FK     +++
Sbjct: 328 FYYTNKNIIIFSNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNLFKTNKYNILI 387

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++ + ARGLD+ ++  V NFD+    + YIHR+GRT RAG+ GK+ T V + D++    I
Sbjct: 388 STQVGARGLDLQNIKIVINFDLC-SCKEYIHRVGRTARAGKTGKSITFVTQYDVETFLTI 446

Query: 361 EKLIEKKVDWL 371
           EK + KK+D  
Sbjct: 447 EKQLNKKIDKF 457


>gi|322504299|emb|CAM41648.2| putative ATP-dependent DEAD/H RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 602

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 125/382 (32%), Positives = 204/382 (53%), Gaps = 5/382 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           ++F+DL     +  A +DAG+ +PTPIQ  + P++L   D+ G+A+TG+GKT +F++P  
Sbjct: 145 LEFSDLVAPDAIHQAFMDAGFQRPTPIQSVSWPVLLNSRDIVGVAKTGSGKTMAFMIPAA 204

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNK 117
           +  + +        P  L+L PTRELA Q+     K        +   +  G P   Q +
Sbjct: 205 LHIMAQPPLQPGDGPIALVLAPTRELAVQIETETRKSLTRVPSIMTTCVYGGTPKGPQQR 264

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G  V I TPGR++D        +  +  L +DEADRMLDMGF   I+ I S +   
Sbjct: 265 SLRAGVHVCIATPGRLIDLLETNCTNLLRVTYLTLDEADRMLDMGFEDQIRKICSQIRTD 324

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL+FSAT   E++ ++ +F ++  R+ + +    A    H  V     Y K    L++
Sbjct: 325 RQTLMFSATWPREIRNLAASFQKDFVRVHIGSEELVANADVHQHVFVVEGYHK-EEKLEE 383

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L+     +  +    +K   +           +V AIHG+  Q SR  +L  F++    
Sbjct: 384 ILRQVGPQRVLVFVKTKKSCDILQDRLGRALRQTVLAIHGDKLQSSRDYVLDRFRKDERA 443

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED-IKH 356
           ++VA+D+AARGLDI ++  V N+D+P   E+Y+HRIGRTGRAG+ G A++ V+  D  K 
Sbjct: 444 ILVATDVAARGLDIKNLDVVVNYDMPLNIEDYVHRIGRTGRAGKTGDAYSFVSSADNSKT 503

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
           I  + +L+ +    ++ +L ++
Sbjct: 504 IRDLIELLLRAKQEVSPELYAV 525


>gi|189234356|ref|XP_973872.2| PREDICTED: similar to pitchoune CG6375-PB [Tribolium castaneum]
          Length = 695

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 110/367 (29%), Positives = 188/367 (51%), Gaps = 5/367 (1%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            F  L   +    + A+ D G+   T IQ ++IP +L+  D+ G A+TG+GKT +F++P 
Sbjct: 129 TFDSLKNKVCENTLKAIADMGFTTLTEIQARSIPPLLEGRDLVGAAKTGSGKTLAFLIPA 188

Query: 60  LTILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K +   R     +I+ PTREL+ Q     ++  K ++ T  L++GG   + + +K
Sbjct: 189 VELIYKLKFMPRNGTGVIIISPTRELSMQTFGVLKELMKYHHHTYGLVMGGTSRQTEAQK 248

Query: 119 LERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G ++L+ TPGR+LDH          N++ LVIDEADR+LD+GF   ++ I +L+P  
Sbjct: 249 LSKGINILVATPGRLLDHMQNTPDFLFKNLQCLVIDEADRILDIGFEEEMKQIINLLPKR 308

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T + + ++   L+          + +  T+           S+K  L+  
Sbjct: 309 RQTMLFSATQTKKTEALTSLALKKEPIYVGVDDAKSEATVTGLEQGYVVCPSEKRLLVLF 368

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V             V  IHG   Q  R      F      
Sbjct: 369 TFLKKNRKKKVMVFFSSCMSVKFHHELFNYIDLPVMCIHGKQKQAKRTTTFFQFCNAESG 428

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
           +++ +D+AARGLDIP V  +  +D P+  + YIHR+GRT R  G  G A  ++  E++  
Sbjct: 429 ILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGF 488

Query: 357 IDAIEKL 363
           +  +++ 
Sbjct: 489 LRYLKQA 495


>gi|270001921|gb|EEZ98368.1| hypothetical protein TcasGA2_TC000825 [Tribolium castaneum]
          Length = 629

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 110/367 (29%), Positives = 188/367 (51%), Gaps = 5/367 (1%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            F  L   +    + A+ D G+   T IQ ++IP +L+  D+ G A+TG+GKT +F++P 
Sbjct: 129 TFDSLKNKVCENTLKAIADMGFTTLTEIQARSIPPLLEGRDLVGAAKTGSGKTLAFLIPA 188

Query: 60  LTILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K +   R     +I+ PTREL+ Q     ++  K ++ T  L++GG   + + +K
Sbjct: 189 VELIYKLKFMPRNGTGVIIISPTRELSMQTFGVLKELMKYHHHTYGLVMGGTSRQTEAQK 248

Query: 119 LERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G ++L+ TPGR+LDH          N++ LVIDEADR+LD+GF   ++ I +L+P  
Sbjct: 249 LSKGINILVATPGRLLDHMQNTPDFLFKNLQCLVIDEADRILDIGFEEEMKQIINLLPKR 308

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T + + ++   L+          + +  T+           S+K  L+  
Sbjct: 309 RQTMLFSATQTKKTEALTSLALKKEPIYVGVDDAKSEATVTGLEQGYVVCPSEKRLLVLF 368

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V             V  IHG   Q  R      F      
Sbjct: 369 TFLKKNRKKKVMVFFSSCMSVKFHHELFNYIDLPVMCIHGKQKQAKRTTTFFQFCNAESG 428

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
           +++ +D+AARGLDIP V  +  +D P+  + YIHR+GRT R  G  G A  ++  E++  
Sbjct: 429 ILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGF 488

Query: 357 IDAIEKL 363
           +  +++ 
Sbjct: 489 LRYLKQA 495


>gi|166710445|ref|ZP_02241652.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 574

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 128/422 (30%), Positives = 215/422 (50%), Gaps = 6/422 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L P +V  +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++
Sbjct: 9   VTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVM 68

Query: 61  TILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L         +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q 
Sbjct: 69  NRLLNRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQR 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIE-ILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L++G DV+I TPGR++D+  + K++  +   I V+DEADRM D+GFI  I+ +   +P
Sbjct: 129 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                     + T   + +   +    +  ++   + T  T        Y    ++   L
Sbjct: 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETI-TAARVRQRIYFPSDEEKQTL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L S+      ++F N K  V  +   LE+ G+ V  + G++ Q+ R  +L+ F++G 
Sbjct: 248 LLGLLSRSEGARTMVFVNTKVFVERVARILERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +  IE  IE+K+         L P      +        +       T F   ++  ++
Sbjct: 368 SLPDIEAYIEQKIPVEPVTSELLTPLPRAARVPVEGEEADDEAGDSVGTIFREAREQRAA 427

Query: 416 QK 417
           ++
Sbjct: 428 EE 429


>gi|121607326|ref|YP_995133.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121551966|gb|ABM56115.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 609

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 134/476 (28%), Positives = 222/476 (46%), Gaps = 55/476 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRH------DVCGIAQTGTGKTASF 55
           F ++GL+P++V AV D GY  PT +Q K IPL +   H      D+   +QTG+GKTA++
Sbjct: 78  FIEMGLAPELVRAVADLGYTGPTIVQRKAIPLAMGAGHGATRFIDLMVSSQTGSGKTAAY 137

Query: 56  VLPMLT---------------------------------------ILEKGRARVRMPRTL 76
           +LP+L                                         +     +   P  L
Sbjct: 138 LLPLLHTLIGQQAQVQAQERAALERAAADAATRDAPAPKRPKRKDPMHTRHFKAATPGAL 197

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           IL PTRELA QVA +     ++        + G           + A +++ TPGR+LD 
Sbjct: 198 ILCPTRELAQQVAHDAIDLARHCRGLRVANVVGGMPYQMQIAKLQNASLVVATPGRLLDL 257

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
               ++ ++ ++ LV+DEADRMLD+GF   +  I  L    +QT++FSAT    +Q+++ 
Sbjct: 258 QRSMQIKLDKVQFLVVDEADRMLDLGFSDDLAEINQLTSQRQQTMMFSATFAPRIQQLAL 317

Query: 197 NFLQN--PKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
             + +      ++   S   +      +  +A  ++    L         +   I+F + 
Sbjct: 318 RVMHDGGSSVQKLTIDSPQEKHANIRQMLYWADNAQHKRKLLDHWLRDTQINQAIVFAST 377

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           +     L   L++ GFS  A+HG ++Q  R + L+  ++G +Q++VA+D+AARG+D+P +
Sbjct: 378 QVECDALAGELQQAGFSAVALHGALNQGLRNRRLTALRDGQVQILVATDVAARGIDVPTI 437

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLN 372
            HVFNF +P +AE+Y HRIGRTGRAGR G A +     D + I  IE    +  K + + 
Sbjct: 438 THVFNFGLPMKAEDYTHRIGRTGRAGRDGLAISFAEFRDRRKIHDIESFSRQSFKAEVIP 497

Query: 373 GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR--KKNYSSQKSHIPLKESE 426
           G   +  PP         +   +  P   +  G +RR         +   P +E++
Sbjct: 498 GLEPAQRPPQAPRSA---DFGGRGRPGGYERDGRERRFGGPARGDDRGFAPRREAQ 550


>gi|282855404|ref|ZP_06264727.1| cold-shock deAd box protein a [Pyramidobacter piscolens W5455]
 gi|282586784|gb|EFB92029.1| cold-shock deAd box protein a [Pyramidobacter piscolens W5455]
          Length = 467

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 134/395 (33%), Positives = 210/395 (53%), Gaps = 12/395 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L    + A+   G+  PTP+Q + +       D+   A+TG+GKT +F+LP+L+
Sbjct: 17  SFRDFNLPESFLAALDQRGFTTPTPVQAQVLSQPNLDTDMVVQARTGSGKTLAFLLPLLS 76

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            LE G  +   PR L+L PTRELA Q A   E  G+   +  A ++GG+  E Q  +L  
Sbjct: 77  ELEGGSKK---PRLLVLSPTRELAMQNASESEFLGRIRGVGTASIVGGMSMEHQIFQLRH 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR+LDH  RG L ++ IE LV+DE D MLDMGF   ++ I       ++T 
Sbjct: 134 GASVVVGTPGRVLDHIRRGTLDLSEIETLVLDEGDNMLDMGFRDELEAILEAAVNRKKTW 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D +  +   +L+ P R+E+N      E  E      Y   S++       +  
Sbjct: 194 LFSATMPDSVFSLCRRYLKEPMRLELN---HEEEQHEDIVHRAYLVPSRQRMEALVNILL 250

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     +IFC+ K +   +   L+++G    A++G++ QR R   L +F+ G I ++VA
Sbjct: 251 WEKPALCLIFCHTKTDTGEVAGRLQEEGLMALALNGDMTQRERSNALESFRTGRIPILVA 310

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +++AARGLD+  V HV    +P+  E ++HR GRTGRAG  G    L+  ++      + 
Sbjct: 311 TNVAARGLDVQGVSHVIQLGLPDNMETFVHRSGRTGRAGHEGSNLLLLTPQESGRFKFML 370

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
           +  E KV+WL        P +++I + Q     ++
Sbjct: 371 RSSEMKVEWLKV------PDIQEISVIQRERREES 399


>gi|221065934|ref|ZP_03542039.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
 gi|220710957|gb|EED66325.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
          Length = 430

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 129/419 (30%), Positives = 203/419 (48%), Gaps = 21/419 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL  +++ A LD G    TPIQ + IP VL   D+   A TG+GKT +++LP+L
Sbjct: 1   MSFAPLGLRAELLDATLDLGLRDATPIQTEAIPAVLAGRDLWACAPTGSGKTMAYLLPLL 60

Query: 61  TIL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                    + G  R      L+      L    + +             ++ GG+    
Sbjct: 61  QAWLAQKRGQTGFVRPLATLILVPTRELALQVHESLSDITRQLREQPRSRVVYGGVSINP 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  +L   AD L+ TPGR+LD      + +N ++ LV+DEADR+LD GF   +  + +L+
Sbjct: 121 QMMQLRGSADFLVATPGRLLDLVENNAVRLNTVQHLVLDEADRLLDQGFAEELNRVLALL 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY------AQY 228
           P  RQTLLFSAT    ++ ++   L +P R++V+   +   +     ++         + 
Sbjct: 181 PAKRQTLLFSATFPQNVEALAARLLHDPVRVQVDADQAAEHSASPENISQRAIAVDSNRR 240

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           ++    L +  ++Q   +  ++F  ++     L   L K G      HG++ Q +R ++L
Sbjct: 241 TQLLRQLVKQGENQPEWERALVFVAKRHTAEMLADKLYKAGIYATTFHGDMSQGARKEVL 300

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             FK    QL++ +DLAARG+DI  +  V N+D+P    +YIHRIGRTGRAG  G A T 
Sbjct: 301 DQFKAKRWQLLITTDLAARGIDIAQLPTVINYDLPRSPADYIHRIGRTGRAGHAGCAITF 360

Query: 349 VAKEDIKHIDAIEKL--IEKKVDWLNGDL--SSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           V+  D  H   I K   ++  ++ L G     +L PP     +AQ  +       P K 
Sbjct: 361 VSPADTVHWQLICKRNQLDIALEQLQGFEPTEALPPP-----VAQDGNGGVKGRRPSKK 414


>gi|254429992|ref|ZP_05043699.1| DbpA RNA binding domain family [Alcanivorax sp. DG881]
 gi|196196161|gb|EDX91120.1| DbpA RNA binding domain family [Alcanivorax sp. DG881]
          Length = 459

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 136/379 (35%), Positives = 212/379 (55%), Gaps = 10/379 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L LS +++  +   GY   TP+Q +++P VL+ HDV   A TG+GKTA+F L +L  
Sbjct: 6   FASLPLSAELLANLNTLGYATMTPVQAQSLPFVLKGHDVIAQASTGSGKTAAFGLGLLHP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L     R    + L+L PTRELA QVA    +  +       L +  G P   Q   LE 
Sbjct: 66  L---NPRYYGCQALVLCPTRELADQVAGEIRRLARGPGNIKVLTLCGGQPIGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+L H ++G L +  +  LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 123 GAQIVVGTPGRVLKHLSKGTLSLEGLNTLVLDEADRMLDMGFYDSIAEVIRQTPSRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++E F+ NP+ +EV      ++  +  +    A+  +  A      + 
Sbjct: 183 LFSATYPAGIKQLAETFMNNPQHVEVEALHDNSQIEQRYYEVDPAEREEAVARAIACFRP 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++FC  KK   ++ + L +QG S   ++ +++QR R ++L+ F   ++ ++VA
Sbjct: 243 VSC----VVFCVTKKQCQDVVNQLCRQGMSAMVLNSDLEQRERDEVLTLFANRSLSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++  V N ++ +  + +IHR+GRTGRAG  G A  LVA  + +   AIE
Sbjct: 299 TDVAARGLDIDNLDMVINAELSHEPQTHIHRVGRTGRAGEKGLAINLVAPRESRRAMAIE 358

Query: 362 KLIEKKVDWLNGDLSSLNP 380
           +L    ++W    +SSL P
Sbjct: 359 ELQGAPLNWHP--VSSLKP 375


>gi|168035593|ref|XP_001770294.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678511|gb|EDQ64969.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 425

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 158/376 (42%), Gaps = 3/376 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V                   + F  Y  +  + V      I       K E  
Sbjct: 106 IEPVTGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKTHKDLLKNECP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L +    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 166 HIVVGTPGRILGLARDKDLSLKSVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  I V+  +               +  K        L   
Sbjct: 226 FSATLSKEIRPVCKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLGEVEKNR--KLNDLLDA 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L +  F    IH  + Q  R+     FKEG  +++VA+
Sbjct: 284 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDAIE 361
           DL  RG+DI  V  V N+D+P+ A+ Y+HR+GR GR G  G A T V +  D   ++ ++
Sbjct: 344 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASPSDSDVLNQVQ 403

Query: 362 KLIEKKVDWLNGDLSS 377
           +  E  +  L   + +
Sbjct: 404 ERFEVDIKELPEQIDT 419


>gi|301609527|ref|XP_002934380.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Xenopus (Silurana)
           tropicalis]
          Length = 847

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 130/366 (35%), Positives = 199/366 (54%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   V+  GY  PTPIQ K IP++L   DV  +A+TG+GKTA F++PM   
Sbjct: 75  FQSMGLSYPVFKGVMKKGYKVPTPIQRKVIPVILDGKDVVAMARTGSGKTACFLIPMFEK 134

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 135 LKAHSAQTG-VRGLILSPTRELALQTLKFTKELGKFTGLKTALILGGDKMEDQFAALHEN 193

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L +  +E +V DEADR+ +MGF   +Q I S +P TRQTLL
Sbjct: 194 PDIIIATPGRLMHVAIEMNLKLRTVEYVVFDEADRLFEMGFAEQLQEIISRLPETRQTLL 253

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +  ++ +            K   LL  L    
Sbjct: 254 FSATLPKMLLEFARAGLTEPVLIRLDVDTKLSDQL-KLSFFNVRVEDKPAVLLHLLRCVV 312

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  +IF   K +   L   L+ QG     I+  +DQ +R   L  F  G ++ ++ +
Sbjct: 313 KPQEQTVIFVATKHHAEYLRELLDMQGIPCSHIYSALDQTARKINLGLFLHGKVRALLVT 372

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP + +V N++ P +A+ ++HR+GR  RAGR G A++L+A ++I ++  +  
Sbjct: 373 DVAARGIDIPMLDNVINYNFPPKAKLFLHRVGRVARAGRSGTAYSLIAPDEIPYVYDLHL 432

Query: 363 LIEKKV 368
            + + +
Sbjct: 433 FLGRPL 438


>gi|166711813|ref|ZP_02243020.1| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 458

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 127/381 (33%), Positives = 189/381 (49%), Gaps = 6/381 (1%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F+ L LSP +   +   GY   TPIQ +++P +L+  DV   A TG+GKTA+F L +
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILRGLDVIAQAPTGSGKTAAFGLGL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  L+    R +                        G      V L  G           
Sbjct: 61  LQKLDPALTRAQALVLC-PTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I S     RQ
Sbjct: 120 AHDPHVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT    ++ ++   L++P  I V    +  E  +  F        K  A L    
Sbjct: 180 SLLFSATFPHIIRALAREILKDPIEITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLL-- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             + T ++ ++FCN +K V  +  SL + GFS  A+HG+++QR R ++L  F   +  ++
Sbjct: 238 --RFTPESSVVFCNTRKEVDEVAGSLHEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+HG A +LVA  +     A
Sbjct: 296 VASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARAQA 355

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           +E    + + W    L++  P
Sbjct: 356 LEAEQGQPLKWSRAPLATARP 376


>gi|221134543|ref|ZP_03560848.1| DEAD/DEAH box helicase-like protein [Glaciecola sp. HTCC2999]
          Length = 452

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 114/369 (30%), Positives = 182/369 (49%), Gaps = 1/369 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+DL L  ++V  + +  + +PTP+Q  TIP  +   D+   ++TG+GKT +FVLP++
Sbjct: 7   LTFSDLNLDHRIVTTLTNKHFTEPTPVQANTIPYAMIGRDILCCSKTGSGKTFAFVLPII 66

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              + +     R  R LIL PTRELA QV            L   L++GG  F  Q K L
Sbjct: 67  HRLMNQKSFAKRDARALILAPTRELAKQVYLEVRALVSALPLKAQLVVGGENFNDQVKAL 126

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +++ T GR+ DH +   + +N +EILV DEADRMLD+GF   +  I       ++
Sbjct: 127 RHNPQIIVGTAGRVADHLSGRTVFLNGLEILVYDEADRMLDLGFAKQLLEINQAADHRKR 186

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +  +   D             +  ++   SS     +      +A + +    L   +
Sbjct: 187 QTMLFSATLDSPSLTHLTDTLLKQPEKIMLDSSFTIHSDITQQWYFADHIEHKHALLAAI 246

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++      I+FC  +++ V L   L +      A+ G++ Q  R  ++S+F  G   ++
Sbjct: 247 LNEVEHNQAIVFCATREDTVRLKDLLNEANLDAIALSGDLLQNQRAHVMSSFISGQHSVL 306

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLD+  V  V NFD+P  AE Y+HRIGRTGRAG  G A  LV   D      
Sbjct: 307 VTTDVASRGLDMKKVSLVVNFDLPKLAEEYVHRIGRTGRAGAKGLAIALVGPRDWTAFTH 366

Query: 360 IEKLIEKKV 368
           I++ +   +
Sbjct: 367 IQRNVGSDI 375


>gi|28575014|ref|NP_612028.4| CG32344 [Drosophila melanogaster]
 gi|18447311|gb|AAL68229.1| LD28101p [Drosophila melanogaster]
 gi|23092697|gb|AAN11439.1| CG32344 [Drosophila melanogaster]
 gi|220947558|gb|ACL86322.1| CG32344-PA [synthetic construct]
          Length = 827

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 121/431 (28%), Positives = 218/431 (50%), Gaps = 3/431 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   GY  PTPIQ KTIPL+L+  DV  +A+TG+GKTA F++P+   
Sbjct: 41  FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++        R LIL PTRELA Q     ++ G+   L   L++GG   ++Q   +   
Sbjct: 101 LQRREPTKGA-RALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTC 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR L       L +N+IE +V DEADR+ +MGF   +      +P +RQT++
Sbjct: 160 PDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQTVM 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L +P  I ++  S   + +            +  AL+  L    
Sbjct: 220 FSATLPKLLVEFARAGLNDPVLIRLDVESKLPDAL-ALKFLYCRPDDRYTALVVLLKYVI 278

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   + +V  + + L + G S  +++ ++D  +R    + F    + +++ +
Sbjct: 279 PVQSQTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIVT 338

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP +  V N   P + + ++HR+GR  RAGR G A+++V+ +D  H+  +  
Sbjct: 339 DVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLLDLHL 398

Query: 363 LIEKKVDWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
            + +  +  +   L ++   L + +       +K++ I       +   K Y S +    
Sbjct: 399 FLNRPFNIHDSSALGTIPQDLLEEEHLTVTDIKKSHHIAGVLRTSENAYKKYLSSRPVAS 458

Query: 422 LKESEKISKLQ 432
              + ++ K++
Sbjct: 459 TDANARVKKIK 469


>gi|322806015|emb|CBZ03582.1| ATP-dependent RNA helicase YfmL [Clostridium botulinum H04402 065]
          Length = 421

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 116/416 (27%), Positives = 214/416 (51%), Gaps = 14/416 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L+PK+V  +       PT IQ K IPL ++  D+ G ++TGTGKT +++LP+  
Sbjct: 4   SFDTLNLNPKLVQGLKKLNINIPTEIQAKAIPLAMENKDIIGQSETGTGKTLAYLLPIFE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNKKL 119
            +   +  ++     IL PT ELA Q+ +  +    N N+      +IG    + Q +KL
Sbjct: 64  KITTEKREMQAI---ILAPTHELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +++ +PGRIL+   + K+  + ++ +VIDE D++LD   +  ++ +       RQ
Sbjct: 121 KEKPHIIVGSPGRILELIKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT+T+    ++++ +++ + ++V   ++  E I+H ++       ++   + + L
Sbjct: 181 LMLFSATITESTLNIAKDLMKDSEVVKVKEKNTVNENIKHLYITGEH---RERIEILRKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    K  I+F N+ + +      L+        I+G  ++  R K L +F+ G +Q++
Sbjct: 238 IAATNPKRAIVFINRNEEIELTTLKLQYHKIKAYGIYGAAEKEQRKKALEDFRLGKVQIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V+SDL+ARGLD+ DV H+FN D+P   + Y+HR+GRTGRA + G A +++ +++   I  
Sbjct: 298 VSSDLSARGLDVKDVTHIFNLDLPENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRK 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            EK     ++       +L      I       ++  +     S   D  KK  SS
Sbjct: 358 YEKEFNINIEEKKIYKGTL------ISSKGERSSQPKSKNKSTSAHKDNNKKKRSS 407


>gi|242798281|ref|XP_002483137.1| ATP-dependent RNA helicase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218716482|gb|EED15903.1| ATP-dependent RNA helicase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 591

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 113/408 (27%), Positives = 205/408 (50%), Gaps = 7/408 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS + + A+ + G+   T IQ + IP ++   DV G A+TG+GKT +F++P + 
Sbjct: 113 KFTELNLSDRTLEAIKEMGFETMTEIQQRAIPPLMAGRDVLGAAKTGSGKTLAFLIPAIE 172

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   + + R    + IL PTRELA Q+     +  + ++ T  +++GG    A+ +KLE
Sbjct: 173 LLHSLKFKPRNGTGVLILSPTRELALQIWGVARQLLEKHSQTHGIVMGGANRRAEAEKLE 232

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G ++L+ TPGR +    N    +  N+  LVIDEADR+L++GF   ++ I  ++    +
Sbjct: 233 KGVNLLVATPGRLLDHLQNTKGFVFKNLRQLVIDEADRILEIGFEDEMKQIMKILGNGER 292

Query: 180 TLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
               FSAT T +++ ++   L+         P     T++            K  LL   
Sbjct: 293 QTSLFSATQTTKVEDLARISLKPGPLYINVVPRMENATVDRLEQGYVVCEPDKRFLLLFS 352

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +   +V      L      V +IHG   Q+ R      F      +
Sbjct: 353 FLKRNLKKKIIVFLSSCNSVNYYSELLNYIDLPVLSIHGKQKQQKRTSTFFEFVNSERGI 412

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP++ +V  +D P+   +YIHR+GRT R A   G++   +   ++  +
Sbjct: 413 LICTDVAARGLDIPEIDYVVQYDPPDDPRDYIHRVGRTARGAKAKGRSLMFLQPSEMGFL 472

Query: 358 DAIE--KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
             ++  K+   + ++    + ++   LEK+ I+Q+ +  K+     +S
Sbjct: 473 THLKEAKVPVVEFEFPQKKIINVQSQLEKL-ISQNYYLNKSAKEGYRS 519


>gi|24374643|ref|NP_718686.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24349273|gb|AAN56130.1|AE015749_7 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 427

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 146/417 (35%), Positives = 219/417 (52%), Gaps = 19/417 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+   +   + + GYV PTP+Q  TIP VL   DV   A TG+GKTA+F LP+L 
Sbjct: 10  SFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQ 69

Query: 62  I---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQN 116
                +       + R L+L PTRELA QVAD+F  Y  ++N    +    GG+    Q 
Sbjct: 70  RLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQM 129

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  GADVL+ TPGR+LD      L +  +   V+DEADRML +GF   ++ + + +P 
Sbjct: 130 QSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPR 189

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +QTLLFSAT  +E++ ++   L  P    + +     E              ++   L 
Sbjct: 190 QKQTLLFSATFPEEVRALTTKLLHQPLEYHLQS-----EQESTIEQRVITVNREQKTALL 244

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L  Q      +IF + K    +L   L K+G S    HG+  Q +R ++L  FK G I
Sbjct: 245 AHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEI 304

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARG+DI  +  V NFD+P    +Y+HRIGR+GRAG  G A TL++ E+  H
Sbjct: 305 SVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHH 364

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
              IEK  + K+  + + G  ++   PLE +       A++      + TG  +RK+
Sbjct: 365 FGVIEKKNKIKLVREQIPGFEANAEIPLEVL-------AQEKPQAKPEGTGKKKRKQ 414


>gi|213018866|ref|ZP_03334674.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|212995817|gb|EEB56457.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 402

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 151/417 (36%), Positives = 218/417 (52%), Gaps = 22/417 (5%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +GL   +  A+       PTPIQ++ IPL LQ  D+ G AQTGTGKT +F +P++  L  
Sbjct: 1   MGLPTLLRQALSKNNLCVPTPIQVQAIPLALQGKDILGSAQTGTGKTLAFAIPLVAKL-- 58

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLERGAD 124
                 +   L++ PTRELA QV     K   ++  L VALLIGG P   Q  +L++   
Sbjct: 59  -MNEPSIGSALVIVPTRELAHQVTSEIRKLLSQSSLLRVALLIGGEPIFRQLNQLQKKPQ 117

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           ++I TPGRI+DH  R  L+  N+ ILV+DE DRM DMGF   I+ I   +P  RQTL+FS
Sbjct: 118 IIIGTPGRIIDHIERKTLVTRNVGILVLDETDRMFDMGFGIQIEEIMKHLPKIRQTLMFS 177

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT+  E+ K++E +L  P+R           T            S+     + + Q    
Sbjct: 178 ATLPGEIVKLTEKYLNQPER----VSVDCQATTSVKIKQEVVYASESEKYGKLVTQLCQR 233

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
             + IIF   K+    L   L K  +S  AIHG++ Q  R +++ +F+ G  Q+MVA+D+
Sbjct: 234 KGSIIIFVKTKRGADQLADKLHKDDYSALAIHGDLRQHKRERVIDSFRRGRNQIMVATDV 293

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           A+RGLDIP + HV N+DVP    +Y+HRIGRT RAG  G A + V  +D + + A+    
Sbjct: 294 ASRGLDIPHIQHVINYDVPQSQADYVHRIGRTARAGAEGFALSFVTPQDKRRLPALAD-- 351

Query: 365 EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK-STGFDRRKKNYSSQKSHI 420
             K    N D S           +Q  +++K    P      + R+K N   +KS +
Sbjct: 352 --KEGEPNFDCSM---------QSQKRNSKKIFKRPSTLKAKYGRKKINVFKKKSRV 397


>gi|195583246|ref|XP_002081434.1| GD25714 [Drosophila simulans]
 gi|194193443|gb|EDX07019.1| GD25714 [Drosophila simulans]
          Length = 827

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 121/431 (28%), Positives = 218/431 (50%), Gaps = 3/431 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   GY  PTPIQ KTIPL+L+  DV  +A+TG+GKTA F++P+   
Sbjct: 41  FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++        R LIL PTRELA Q     ++ G+   L   L++GG   ++Q   +   
Sbjct: 101 LQRREPTKGA-RALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTC 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR L       L +N+IE +V DEADR+ +MGF   +      +P +RQT++
Sbjct: 160 PDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQTVM 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L +P  I ++  S   + +            +  AL+  L    
Sbjct: 220 FSATLPKLLVEFARAGLNDPVLIRLDVESKLPDAL-ALKFLYCRPDDRYTALVVLLKYVI 278

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   + +V  + + L + G S  +++ ++D  +R    + F    + +++ +
Sbjct: 279 PVESQTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIVT 338

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP +  V N   P + + ++HR+GR  RAGR G A+++V+ +D  H+  +  
Sbjct: 339 DVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLLDLHL 398

Query: 363 LIEKKVDWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
            + +  +  +   L ++   L + +       +K++ I       +   K Y S +    
Sbjct: 399 FLNRPFNIHDSSALGTIPQDLLEEEHLTVTDIKKSHHIAGVLRTSENAYKKYLSSRPVAS 458

Query: 422 LKESEKISKLQ 432
              + ++ K++
Sbjct: 459 TDANARVKKIK 469


>gi|198430623|ref|XP_002127634.1| PREDICTED: similar to HLA-B associated transcript 1 [Ciona
           intestinalis]
          Length = 424

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 97/393 (24%), Positives = 170/393 (43%), Gaps = 13/393 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 44  FRDFLLKPELLRAIVDCGFEHPSEVQNECIPQAVLGMDVLCQAKSGMGKTAVFVLATLQQ 103

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY     + V      I  +    K    
Sbjct: 104 LEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPTIKVAVFFGGLPITKDQTTLKNNCP 163

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L N    ++ +    +  +     +Q+I  L P  +Q ++
Sbjct: 164 HIVVGTPGRLLALIRSKSLTLKNVKHFILDECDKMLEQLDMRRDVQDIFRLTPHEKQVMM 223

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ +++ V + F+Q+P  + V+  +                  K   L        
Sbjct: 224 FSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKLKDNEKNRKLFDL--LDA 281

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L++Q F    IH  ++Q  R+     FK    +++VA+
Sbjct: 282 LEFNQVVIFVKSVQRCMALAQLLKEQNFPAIDIHRAMNQEERLSRYQLFKNFERRILVAT 341

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 342 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKTLNDVQ 401

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
              E  V  L           ++IDI+ +   R
Sbjct: 402 DRFEVNVTELP----------DEIDISAYIEGR 424


>gi|115762569|ref|XP_792708.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115945187|ref|XP_001182545.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 889

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 124/372 (33%), Positives = 200/372 (53%), Gaps = 2/372 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ K IP++++  DV G+A+TG+GKTA+F+LPML  
Sbjct: 75  FQSMGLSHAVFKGIMKKGYKIPTPIQRKCIPIIMEGQDVVGMARTGSGKTAAFLLPMLER 134

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++  A+    R LIL PTRELA Q     ++  +  +L   +++GG   + Q   L   
Sbjct: 135 LQRRSAQSGA-RALILSPTRELALQTLKFTKELARYTDLRSEVILGGDRMDDQFAALHEN 193

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI T GR+L       L +  +E +V DEADR+ +MGF   +  I S +P  RQTLL
Sbjct: 194 PDILIATRGRLLHVLVEMDLKLMQVEYVVFDEADRLFEMGFAEQLNEILSRLPDNRQTLL 253

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  + ++  S  +E +            K   LL  L    
Sbjct: 254 FSATLPKSLVEFASAGLSEPVLVRLDVESKISEQL-KSMFLYTRSNDKTAVLLHLLRDVI 312

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  ++F   + +V  +   LE+ G S   I+  +DQ +R   ++ F      +++ +
Sbjct: 313 QPNQLTVVFLATRHHVDYVRELLEQAGISNTYIYSALDQAARKINVAKFTHKKTHILLVT 372

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP +  V NF  P + + ++HR+GR  RAGR G A+++VA +++ ++  +  
Sbjct: 373 DIAARGIDIPMLDVVINFHFPGKPKLFVHRVGRVARAGRTGTAYSMVAPDELSYLIDLHL 432

Query: 363 LIEKKVDWLNGD 374
            + K + +   D
Sbjct: 433 FLGKDIAFFKND 444


>gi|332669674|ref|YP_004452682.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi
           ATCC 484]
 gi|332338712|gb|AEE45295.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484]
          Length = 590

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 130/401 (32%), Positives = 211/401 (52%), Gaps = 8/401 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  + P++V A+ DAG   P PIQ  T+P+ L RHD+ G A+TGTGKT  F +P+L 
Sbjct: 47  SFADFDVRPEIVQALADAGISHPFPIQAMTLPVALSRHDIIGQAKTGTGKTLGFGVPLLN 106

Query: 62  ILEKGRARVRM-------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L++ PTRELA QVA +        ++ V  + GG  +E 
Sbjct: 107 AVVAPGEDGYDALPAPGKPQALVVVPTRELAVQVAGDLATASARRSVRVVQVYGGRAYEP 166

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L +G DV++ TPGR++D   +  L +  +  +V+DEAD MLD+GF+P ++ + +  
Sbjct: 167 QIDALNKGVDVVVGTPGRMIDLLKQRHLDLTRVRTVVLDEADEMLDLGFLPDVETLLAAT 226

Query: 175 PFTRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           P +R T+LFSATM   +  ++  ++ Q       +     ++T+++     Y  ++    
Sbjct: 227 PASRHTMLFSATMPGAVVAMARRYMTQPTHIRAADPDDDGSQTVKNIKQVVYRAHALDKV 286

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L   +   +     I+F   K+    +   L ++GF+  A+HG++ Q +R + L  F+ 
Sbjct: 287 ELLARMLQANGRGLTIVFARTKRTAAKVADELVERGFAAGALHGDLGQGAREQALRAFRH 346

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G + ++VA+D+AARG+D+ DV HV N+  P   + Y+HR GRTGRAG  G A T V  +D
Sbjct: 347 GKVDVLVATDVAARGIDVEDVTHVVNYQCPEDEKTYLHRTGRTGRAGNKGTAVTFVDWDD 406

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           +     I+K +   +       SS       +DI +    R
Sbjct: 407 MPRWSLIDKALGLGIPEPVETYSSSPHVYTDLDIPEGVKGR 447


>gi|225710008|gb|ACO10850.1| ATP-dependent RNA helicase DDX39 [Caligus rogercresseyi]
          Length = 426

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 92/375 (24%), Positives = 163/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAVLGMDILSQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY     + V      I  + Q  K    
Sbjct: 106 MEPVDGQVSVLVMCHTRELAFQISKEYERFSKYLPGAKVGVFFGGLAISKDEQVLKSNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L N    ++ +    +  +     +Q I    P  +Q ++
Sbjct: 166 HIVVGTPGRILALVRSKKLNLKNVKHFILDECDKMLEQLDMRRDVQEIFRSTPHEKQVMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ +++ V + F+Q+P  + V+  +                  K   L +      
Sbjct: 226 FSATLSKDVRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKLKDTEKNRKLFEL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  V L   L +Q F   AIH  ++Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCVALAQLLIEQNFPAIAIHRGMNQEERLSRYQQFKDFQKRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P   + Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDTDTYLHRVARAGRFGTKGLAITFVSDESDAKTLNEVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  +  L  ++ 
Sbjct: 404 DRFEVDITELPDEID 418


>gi|193641157|ref|XP_001946607.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like
           [Acyrthosiphon pisum]
          Length = 721

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 129/432 (29%), Positives = 218/432 (50%), Gaps = 40/432 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  +  +++  +   GY +PTPIQ + IP+  Q  D+ G+A+TG+GKT ++++P++ 
Sbjct: 293 KWKESTIKSEIMEIIEKVGYKEPTPIQRQAIPIGFQNRDIIGVAETGSGKTLAYLIPLIE 352

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +E+     + P ++IL PTRELA Q+ +   K+G+   +   +++GG+  E Q
Sbjct: 353 WIQSLPKMEREEDVDQGPYSIILAPTRELAQQIEEETLKFGQPLGIRTVVVVGGLSREEQ 412

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 413 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 472

Query: 176 -------------------------FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
                                      RQT++F+ATM   +++++  +L+ P  + + + 
Sbjct: 473 VTNLKPDNEDAEDESKLLANYYTKKKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSI 532

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               E  E           +K  +     +    +   IIF NQKK    L   LEK G+
Sbjct: 533 GKPVERTEQIVHMMSENDKRKRLIEILSRKVDPPI---IIFVNQKKGADVLAKGLEKLGY 589

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           + C +HG   Q  R   L++ K G   ++VA+D+  RG+DI DV  V N+D+    E+Y 
Sbjct: 590 NACTLHGGKGQEQREFALASLKGGVKDILVATDVVGRGIDIKDVSMVINYDMAKSIEDYT 649

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A + + K+D      ++++I+          S+  P L     AQH
Sbjct: 650 HRIGRTGRAGKTGVAISFLTKDDSPLFYDLKQVIQA------SPASTCPPELANHPEAQH 703

Query: 391 NHARKNNPIPQK 402
                  P  ++
Sbjct: 704 KPGTVMMPKKRR 715


>gi|310796577|gb|EFQ32038.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 808

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 124/455 (27%), Positives = 206/455 (45%), Gaps = 29/455 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+DL L       +  + +   T IQ + +PL L+  D+ G A+TG+GKT +FV+P+L 
Sbjct: 54  NFSDLPLCEATRTGLDKSHFETLTDIQSRALPLALKGSDILGAAKTGSGKTLAFVIPVLE 113

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L + R         LI+ PTRELAAQ+ +   K G+N++ +  L+IGG   + + ++L 
Sbjct: 114 KLYRARWTEYDGLGALIISPTRELAAQIFEVLRKVGRNHSFSAGLVIGGKSLKEEAERLS 173

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      +          ++N++ILV+DEADR++DMGF   +  +   +P TRQT
Sbjct: 174 KMNILVCTPGRMLQHLDQTAGFDVDNLQILVLDEADRIMDMGFQSAVDALVEHLPATRQT 233

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT + ++        +   R           T ++           +         
Sbjct: 234 LLFSATQSKKISD----LARLSLRDPEYVSVHEESTPKNLQQHYILTPLHEKLDTLYGFI 289

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQL 298
             +     I+F +  K V     S+      +    + G   Q  RM+I   F +     
Sbjct: 290 KANLRSKIIVFFSSGKQVRFAYESMRHLQPGIPLLHLLGKQKQLQRMEITKRFADANYSC 349

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+ ARG+D P V  V   D P  A+ YIHR+GRT R  R GKA   +   +     
Sbjct: 350 LFATDVVARGVDFPAVDWVVQVDCPEDADTYIHRVGRTARYERDGKAVLFLDPSE--EAG 407

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +++L  KKV            P++KI +    + +K+     +S  F      Y  QK+
Sbjct: 408 MLKRLEAKKV------------PIQKITV--KENKKKSIKDQLQSMCFQNPDLKYLGQKA 453

Query: 419 HIP------LKESEKISKLQQDIQENDADSLGFRG 447
            I       L++ +++ K  +   +  A SLG  G
Sbjct: 454 FISYVRSVYLQKDKEVFKFDELDLDTYAASLGLPG 488


>gi|258577621|ref|XP_002542992.1| hypothetical protein UREG_02508 [Uncinocarpus reesii 1704]
 gi|237903258|gb|EEP77659.1| hypothetical protein UREG_02508 [Uncinocarpus reesii 1704]
          Length = 783

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 124/442 (28%), Positives = 203/442 (45%), Gaps = 39/442 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  L  +++  +   GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 344 SWGESTLPARLLEIIDKVGYKDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 403

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                    E    +   P  +IL PTRELA Q+ +   K+       V  ++GG   E 
Sbjct: 404 YIAELPRLDEFEWRKSDGPYAIILAPTRELAQQIENEARKFCSPLGFNVVSIVGGHSLEE 463

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q+  L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 464 QSFSLRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 523

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ------- 227
           P T +                       ++  + T +  +                    
Sbjct: 524 PVTNEKPDTDEAEDPRAMSQHVGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIITIGN 583

Query: 228 -----------------YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
                              K+   L  +L S +     I+F N K+N   +   +++ GF
Sbjct: 584 VGEAVDTVEQRVEFIAGEDKRKKRLADILASGEYRPPIIVFVNIKRNCDAVARDIKQMGF 643

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y 
Sbjct: 644 SAVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYT 703

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ 
Sbjct: 704 HRIGRTGRAGKSGVAITFLGNEDSDVMYDLKQML------MKSSISRVPEELRKHEAAQS 757

Query: 391 --NHARKNNPIPQKSTGFDRRK 410
             N A        +S GF  + 
Sbjct: 758 KPNKAGGGQKKADESGGFGVKS 779


>gi|241148964|ref|XP_002405951.1| ATP-dependent helicase (DEAD box), putative [Ixodes scapularis]
 gi|215493784|gb|EEC03425.1| ATP-dependent helicase (DEAD box), putative [Ixodes scapularis]
          Length = 685

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 111/406 (27%), Positives = 186/406 (45%), Gaps = 28/406 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +       +  +    Y  PT IQ +  P+ L   D+ GIAQTG+GKT +++LP +
Sbjct: 115 LTFQEGCFPDYCMKMIETQNYTTPTAIQSQGWPIALSGRDMVGIAQTGSGKTLAYILPAI 174

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA Q+      +GK   +    + GG P  +Q + 
Sbjct: 175 VHITHQPYLQRGDGPMALVLAPTRELAQQIQQVAADFGKASRIRNTCVFGGAPKGSQLRD 234

Query: 119 LERGADVLICTPGRILDHFNRGKLLMN-------------------------NIEILVID 153
                 +   +   +  +     ++                               LV+D
Sbjct: 235 WREFGALCPASVAVVQRNSQVIVVICRAGVEICIATPGRLIDFLEAGKVNLRRCTYLVLD 294

Query: 154 EADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
           EADRMLDMGF P I+ I   +    QTL++SAT   E++ ++E+FL++  ++ +      
Sbjct: 295 EADRMLDMGFEPQIRKIVEQIRPDCQTLMWSATWPKEVRSLAEDFLKDYIQVNIGALQLC 354

Query: 214 AETIEHCFVATYAQYSKKCA-LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
           A       V    +  K+   +        +     +IF   KK V  L   + + G+  
Sbjct: 355 ANHRIVQIVDVCQESDKENKLMELHKEIINEQDNKTLIFAETKKKVDELTRRMRRNGWPS 414

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
             IHG+  Q  R  +L+ F+ G   ++VA+D+AARGLD+ D+  V N+D P+ +E+YIHR
Sbjct: 415 ICIHGDKSQSERDWVLNEFRSGRSPILVATDVAARGLDVDDIRFVINYDYPHCSEDYIHR 474

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           IGRT R+ + G A+T     ++K    +  ++++    +N  L  +
Sbjct: 475 IGRTARSNKTGTAYTFFTPGNMKQAKELIAVLKEANQAINPKLFEI 520


>gi|308800454|ref|XP_003075008.1| Ddx49 Ddx49-related DEAD box helicase superfamily II protein (IC)
           [Ostreococcus tauri]
 gi|119358858|emb|CAL52279.2| Ddx49 Ddx49-related DEAD box helicase superfamily II protein (IC)
           [Ostreococcus tauri]
          Length = 419

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 132/418 (31%), Positives = 200/418 (47%), Gaps = 10/418 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL   V+  +    +  P+ +Q   IP +L   DV GIA TG+GKTA+F LP++ 
Sbjct: 3   TFDELGLCNVVLKILKRVHFRSPSDVQSTCIPQILAGKDVIGIANTGSGKTAAFALPIVD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +    +       L PTRELA Q+AD F  +G    L   ++ GG     Q   L R
Sbjct: 63  MLSRDPYGIFALC---LSPTRELANQIADQFTVFGAGTGLNCMVITGGEDLIQQATALSR 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNI---EILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             ++++ TPGR+ +HF      +      + L++DEADR+LD  F   ++ + S +P  R
Sbjct: 120 RPNIVVATPGRLFEHFMHSSNTVQYFSKLKCLILDEADRLLDSSFAAELKYLMSNLPQQR 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT+T  +  +           E  +   TA      +     +      +    
Sbjct: 180 QTLMFSATITKSVTALQSMLGDAVFYYEDKSVKKTAVRCSQSYCFMPERIKDVNLVKLVR 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +    K  IIF    +    L   L   G    ++H    Q+ R+  L  FK GT+Q+
Sbjct: 240 ELALVEAKRTIIFTATIQKCELLSQMLTTLGIPSSSLHAAKKQKERLNSLGVFKNGTVQI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+P V  + N+DVP     YIHRIGRT R    GKA T V + DI  + 
Sbjct: 300 LVATDVAARGLDLPSVDMILNYDVPTDVRQYIHRIGRTARFEASGKAVTFVTQFDILKLK 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            IEK I +++D    + SS    + ++  A    A+     P    GFD + +    +
Sbjct: 360 HIEKTIGQQLDSYELEGSSGAELVGEV-FAARRVAKMRMASP---GGFDEKLRAKKKR 413


>gi|121998794|ref|YP_001003581.1| DEAD/DEAH box helicase domain-containing protein [Halorhodospira
           halophila SL1]
 gi|121590199|gb|ABM62779.1| DEAD/DEAH box helicase domain protein [Halorhodospira halophila
           SL1]
          Length = 430

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 136/385 (35%), Positives = 203/385 (52%), Gaps = 14/385 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +   V+  + DAG    TPIQ  T+P  L   ++ G AQTGTGKTA+FV+  L  
Sbjct: 11  FTDLPIHDAVLDGLDDAGLSHCTPIQAATLPRTLAGGNIAGEAQTGTGKTAAFVVATLHH 70

Query: 63  LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L           P  ++L PTRELA Q+ ++ E+ G    L  A + GG  +E+Q K+L+
Sbjct: 71  LMSHPVEEDAVGPWAIMLAPTRELALQIYNDAEQIGAYTGLKFAAVYGGTGYESQRKQLQ 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV+I TPGRI+D   +    + NIE++V+DEADRM D+GFI  I+ +   +P   Q 
Sbjct: 131 EGVDVIIGTPGRIIDFHKQKVFNLRNIEVVVLDEADRMFDLGFISDIRFLLRRMPPADQR 190

Query: 181 LL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           L   FSAT++  + +++   + +P R+ V +   TA+ +         +      +    
Sbjct: 191 LNLLFSATLSYRVMELAWEHMGDPPRVAVESEQRTADHVRQTLYHIAKEDKTSFVVGLL- 249

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  +  +IF N K+    L   L+  G     I G+I Q  R ++L  F+ G + +
Sbjct: 250 --QHIDPRRTLIFANTKRAAERLVGYLKGNGIEAAVISGDIPQNKREQLLEQFRTGELPV 307

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V +D+AARGL I  V HV NFD+P+  E+Y+HRIGRT RAG  G A +L   E +  + 
Sbjct: 308 LVGTDVAARGLHIDAVSHVINFDLPHDPEDYVHRIGRTARAGESGDAISLACDEYVFSLP 367

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLE 383
            IE  + +K+        S  PP E
Sbjct: 368 DIEAYLAEKIP-------SAPPPAE 385


>gi|317418863|emb|CBN80901.1| ATP-dependent RNA helicase DDX19B [Dicentrarchus labrax]
          Length = 488

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 97/382 (25%), Positives = 179/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 102 SFEELRLKPQLLQGVYGMGFNRPSKIQETALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 161

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++      + P+ L + PT ELA Q     E+ GK+Y     +         +  KL
Sbjct: 162 LSHVDPNN---KYPQCLCVSPTYELALQTGKVIEQMGKHYPEVRLVYAIRGNKLQRGMKL 218

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +             +          ++ +    +   G       I  ++P   Q
Sbjct: 219 QEQIVIGTPGTMLDWCGKFKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPKNCQ 278

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  + +   ++  + +P  I++     T +TI+  +V   ++  K        +
Sbjct: 279 MLLFSATFEESVWNFAQRIVPDPNIIKLKREEETLDTIKQYYVLCNSREEK--FQALCNI 336

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L ++G  V  + G +    R  ++  F++G  +++
Sbjct: 337 YGAITIAQAMIFCHTRKTAGWLAGELSREGHQVALLSGEMQVEQRAAVIDRFRDGKEKVL 396

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V ++ 
Sbjct: 397 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAINMVDSRM 456

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 457 SMNILNRIQEHFSKKIEKLDTD 478


>gi|307175593|gb|EFN65503.1| ATP-dependent RNA helicase DDX54 [Camponotus floridanus]
          Length = 751

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 123/389 (31%), Positives = 209/389 (53%), Gaps = 4/389 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  ++  +L  GY  PTPIQ KTIPL L+  D+  +A+TG+GKTA F++P+   
Sbjct: 10  FQSMALSFPILKGILKRGYKIPTPIQRKTIPLALEGRDIVAMARTGSGKTACFLIPLFEK 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  + +    R LIL PTRELA Q     ++ G+   L   +++GG   + Q   +   
Sbjct: 70  LKTRQTKTGA-RALILSPTRELALQTLKFIKELGRFTGLKAVVILGGDSMDNQFSIIHEN 128

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR +       L + N+E +V DEADR+ +MGF   IQ I + +P TRQTLL
Sbjct: 129 PDIIVATPGRFVHICIEMDLKLKNVEYVVFDEADRLFEMGFGEQIQEIVNRLPETRQTLL 188

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L   ++  L +P  + ++  S   E +      T     K   LL  L +  
Sbjct: 189 FSATLPKILVDFAKAGLNDPVLLRLDVESKLPEGL-MLSFITCRPEEKLAVLLCLLKRII 247

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF     +V  +   L+K   S   I+ N+D  +R    + F+ G +++++ +
Sbjct: 248 KPDSQTIIFAETMHHVEYIHQILDKANISNTFIYSNLDPCARKINAAKFQTGKVKVLIVT 307

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP + +V NF+ P +++ ++HR+GR  RAGR G A+ +V+ ++  ++  +  
Sbjct: 308 DVAARGIDIPYLDYVINFNFPAKSKLFVHRVGRCARAGRVGTAYNIVSSDEYPYLLDLHL 367

Query: 363 LIEKKVDWLN--GDLSSLNPPLEKIDIAQ 389
            + + +  +   G + ++   + K+  + 
Sbjct: 368 FLGRPLTIMPSTGSIENVESAVGKMPQSM 396


>gi|240281972|gb|EER45475.1| ATP-dependent RNA helicase HAS1 [Ajellomyces capsulatus H143]
          Length = 542

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 117/376 (31%), Positives = 187/376 (49%), Gaps = 4/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L LS K + A+ D  +   T IQ + IP +L   DV G A+TG+GKT +F++P + 
Sbjct: 161 KFSELNLSDKTMKAIADMKFETMTEIQRRGIPPLLAGRDVLGAAKTGSGKTLAFLIPAVE 220

Query: 62  ILEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + R    +I+  PTRELA Q+     +   +++ T  ++IGG    A+  KL 
Sbjct: 221 MLSALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAGKLT 280

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-VPFTR 178
           +G ++LI TPGR +    N    +  N++ LVIDEADR+L++GF   ++ I  +     R
Sbjct: 281 KGVNLLIATPGRLLDHLQNTQGFVFKNLKALVIDEADRILEVGFEDEMRQIIKILPAEDR 340

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT T +++ ++   L+               T+E          S K  LL   
Sbjct: 341 QTMLFSATQTTKVEDLARISLRQGPLYINVDHRKEHSTVEGLEQGYVICDSDKRFLLLFS 400

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +    V      L      V  ++G   Q+ R      F   T   
Sbjct: 401 FLKRNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLYGKQKQQKRTNTFFEFCNATQGT 460

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R A   G++   +   ++  +
Sbjct: 461 LICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGANGKGRSLMFLQPSEVGFL 520

Query: 358 DAIEKLIEKKVDWLNG 373
             +++     VDW N 
Sbjct: 521 KHLKEARVPVVDWRNS 536


>gi|213409972|ref|XP_002175756.1| ATP-dependent RNA helicase Has1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212003803|gb|EEB09463.1| ATP-dependent RNA helicase Has1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 572

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 117/390 (30%), Positives = 195/390 (50%), Gaps = 8/390 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL LS K + A+ D GY K T +Q +TIP +L   DV G A+TG+GKT +F++P +  
Sbjct: 85  FTDLPLSEKTLNAIKDIGYEKMTEVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIET 144

Query: 63  LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   + + R     +I+ PTRELA Q+    ++  K ++ T  ++IGG    A+  KL +
Sbjct: 145 LYSLKFKPRNGTGVIIVSPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVK 204

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-VPFTRQ 179
           G ++L+ TPGR +    N    +  N+  L+IDEADR+L++GF   ++ I  +     RQ
Sbjct: 205 GVNLLVATPGRLLDHLQNTKGFVFRNLRSLIIDEADRILEIGFEDEMRQIAKVLPSENRQ 264

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT T +++ ++   L+               T +          S K  LL    
Sbjct: 265 TMLFSATQTTKVEDLARISLRPGPLYINVDAGKDTSTADGLEQGYVVVESDKRFLLLFSF 324

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  I+F +   +V  +   L      V  +HG   Q+ R      F      +M
Sbjct: 325 LKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGIM 384

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHID 358
           + +D+AARGLDIP V  +  +D P+   +YIHR+GRT R  +  G++   +   ++  + 
Sbjct: 385 LCTDVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGAKGKGRSLIFLTPSELGFLR 444

Query: 359 AIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
            + K  +  ++        ++++   LEK+
Sbjct: 445 YL-KAAKVPLNEYEFPSNKVANVQSQLEKL 473


>gi|328874156|gb|EGG22522.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 576

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 108/389 (27%), Positives = 185/389 (47%), Gaps = 3/389 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L P +V +    G+ +P+ IQ  TIP VL+  D+   A+TG+GKTA+F +P+L+
Sbjct: 94  SFGDLKLQPWLVNSCKILGFKQPSNIQYNTIPKVLEGRDILASAKTGSGKTAAFAIPILS 153

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L +    V      +L PTRELA Q+ + F+  G   N+  A++IGGI   AQ+  L++
Sbjct: 154 LLSEDPYGVFAV---VLTPTRELAVQIGEQFKAIGSAMNVNCAVVIGGIDSVAQSLVLDK 210

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+  H + G  +       ++ +    +                   +  
Sbjct: 211 RPHIIVATPGRLASHLSNGLKIALKFCKFLVLDEADRILCEDFELEIEKIVEHLPPIENR 270

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
                       + +  L   K   V   +S  +T++          +         L  
Sbjct: 271 QTLLYSATMTNNLKKLQLVPMKDPFVFEDNSKYDTVDTLKQHYIYMPALAKDCHLVYLLK 330

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + IIF N  + V  +   L K      ++H  +DQ+ R++ L  FK G +++++A
Sbjct: 331 SFPQSSCIIFVNNCRTVEAVKGMLNKLDIKTVSLHSFLDQKGRLRALKQFKSGFVKVLIA 390

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDIPDV  V N+ + N +++YIHR+GRT R GR GKA + V   D+  +  +E
Sbjct: 391 TDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFGRTGKAISFVTPHDVDLVKNVE 450

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
             I K+++    +   +   L +   A+ 
Sbjct: 451 TAIGKQLELYPTEDDEVYRHLNEASTARK 479


>gi|226356665|ref|YP_002786405.1| DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti VCD115]
 gi|226318655|gb|ACO46651.1| putative DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti
           VCD115]
          Length = 602

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 130/367 (35%), Positives = 209/367 (56%), Gaps = 5/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  L ++P++   + + G  + +PIQ +++PL L   D+ G A+TGTGKT +F LP++
Sbjct: 1   MNFDQL-IAPELAARLAERGITEASPIQAESLPLTLAGRDMIGRARTGTGKTLAFALPII 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE  R R R PR +++ PTRELA QVA+ F K G     T   + GG  +  Q   L 
Sbjct: 60  QKLEPSRERARPPRAIVVAPTRELAKQVAEEFSKSGVGL--TTVTVYGGASYAPQENALR 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR++DH  RG L ++ +E  V+DEAD ML +GF   I+ I    P +RQT
Sbjct: 118 RGVDVVVGTPGRLIDHLERGNLDLSAVEFAVLDEADEMLSVGFADAIETILQKTPDSRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ +++ ++S N+L+ P  +++     +        +      S+    +   L 
Sbjct: 178 MLFSATLNNDINRLSRNYLREPVIVDMVGEGKSQAAQTVEHLKVRVGRSRTR--VLADLL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +    +  I+F   K+    L + L  +G    A+HG++ Q  R + L  F+ G + ++V
Sbjct: 236 TIYNPEKAIVFTRTKREADELANELIHRGLEAEALHGDLAQSQRERALGAFRSGRVGVLV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP+V  V  + +P   E+Y+HR GRTGRAGR G A  +    + + +  +
Sbjct: 296 ATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIIMYGDRENREVMGL 355

Query: 361 EKLIEKK 367
           E++   +
Sbjct: 356 ERITGVR 362


>gi|70945861|ref|XP_742705.1| RNA helicase [Plasmodium chabaudi chabaudi]
 gi|56521835|emb|CAH78029.1| RNA helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 483

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 120/371 (32%), Positives = 196/371 (52%), Gaps = 8/371 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L +  +V+ ++ + G+ KPT IQ K +PLV Q+ D+ G+++TG+GKTA F++P+L 
Sbjct: 98  SFSQLNICEEVLQSIKELGWEKPTLIQQKVLPLVFQKRDIIGLSETGSGKTACFIIPILQ 157

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN-KKLE 120
            L+    + +    LI+ PTREL  Q+A N +  G N  + +  + GG+    Q+    +
Sbjct: 158 ELKY---KKQSFFALIISPTRELCIQIAQNAQALGSNLLINICTIFGGVDIVTQSLNLAK 214

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      +    N     + N++ LV DEAD++L + F   I  +  ++P  R T
Sbjct: 215 KPNIIISTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSLDFESSINKLLLILPNNRIT 274

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT  + K+ +  L+NP +IEV+   ST +T+   ++       K        L 
Sbjct: 275 FLFSATMTKSVAKLKKASLKNPIKIEVSNKYSTVKTLIETYIFLPL---KYKYTYLCSLC 331

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T KN IIF N       L       G     +HG + Q  R+  L+ FK     +++
Sbjct: 332 FYFTNKNIIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNLFKTNKYNILI 391

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++ + ARGLD+ ++  V NFD+    + YIHR+GRT RAG+ GK+ T V + D++    I
Sbjct: 392 STQVGARGLDLQNIKIVINFDLC-SCKEYIHRVGRTARAGKTGKSITFVTQYDVEAFLTI 450

Query: 361 EKLIEKKVDWL 371
           EK + KK+D  
Sbjct: 451 EKQLNKKIDKF 461


>gi|85014351|ref|XP_955671.1| eukaryotic translation initiation factor 4A [Encephalitozoon
           cuniculi GB-M1]
 gi|74664153|sp|Q8SQM5|IF4A_ENCCU RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|19171365|emb|CAD27090.1| EUKARYOTIC TRANSLATION INITIATION FACTOR 4A [Encephalitozoon
           cuniculi GB-M1]
          Length = 425

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 112/388 (28%), Positives = 183/388 (47%), Gaps = 16/388 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D GL   ++  +   G+  P+ IQ   I  ++   D+   AQ+GTGKT +F +  L 
Sbjct: 39  TWEDYGLKEDLLKGIYSIGFETPSFIQKAAIQPIIDGRDIRAQAQSGTGKTGAFAVAALQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I +  +    + + L+L  TRE+AAQ A  FE  G      VALL GG P  A    LE+
Sbjct: 99  ICDMSQ---DVTQILVLASTREIAAQNAARFEDLGCFMGARVALLSGGSPIAADKVALEK 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+    N  +L M+NI++ VIDEAD ML  GF   +++I   +    +  
Sbjct: 156 KPHIVVGTPGRVEHMININELSMDNIKLFVIDEADEMLKAGFQEQVKSIFRRITNKDEVQ 215

Query: 182 LFSATMTDE-----------LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
           +   + T +           +  V  +   N + ++           E  F      Y  
Sbjct: 216 IAMFSATYDEEELRVSEEILINPVIIDLRYNDQTLKGIRQYFIDLRKEPPFRKGREDYLL 275

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
              +    +  +  +   I+F N K++   +   L +  +    I   + Q  R + L+ 
Sbjct: 276 PKLVTLYDIFRKQRLGQSIVFINSKEDARIVYDWLIRHEWECELISAELTQAERERTLNR 335

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP--NRAENYIHRIGRTGRAGRHGKAFTL 348
           F+ GT + +++S L +RG+DI ++  VF  DVP   R   YIHRIGR+GR GR G A  +
Sbjct: 336 FRGGTGRCLISSGLLSRGIDIQNLSVVFCLDVPSFERKSTYIHRIGRSGRYGRKGIAINI 395

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
           V + ++K++ AIE+     +  L  D S
Sbjct: 396 VYEHELKNLKAIERFYNTTIKELPADFS 423


>gi|312140644|ref|YP_004007980.1| dead/deah box helicase [Rhodococcus equi 103S]
 gi|325675727|ref|ZP_08155411.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
 gi|311889983|emb|CBH49301.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
 gi|325553698|gb|EGD23376.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
          Length = 545

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 150/438 (34%), Positives = 228/438 (52%), Gaps = 22/438 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+  ++V A+ + G  +   IQ  T+PL L   D+ G A+TG GKT  F +P+L 
Sbjct: 42  TFGELGVRDEIVKALAEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGIPLLH 101

Query: 62  ILEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNL-----TVALLIGGIPF 112
            +    +        PR L++ PTREL  QV  + E   K          V  + GG P+
Sbjct: 102 RVSTADSGTTPLDGTPRALVIVPTRELCVQVTQDLENASKYLKSGEKKLEVLSIYGGRPY 161

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E Q   L +G DV++ TPGR+LD  N+G L++  + +LV+DEAD MLD+GF+P I+ I  
Sbjct: 162 EQQIDALRKGVDVVVGTPGRLLDLANQGHLILGKVGVLVLDEADEMLDLGFLPDIERILG 221

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           +VP  RQT+LFSATM   +  ++  FL  P  I      S+A           A    K 
Sbjct: 222 MVPDKRQTMLFSATMPGPIITLARTFLTQPTHIRAEEADSSAVHERTTQHIYRAHALDKA 281

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            ++ ++LQ+       I    + +    +   L ++GF+V A+HG++ Q +R K L+ F+
Sbjct: 282 EMVARVLQADGRGATMIFTRTK-RTAQKVADDLNERGFNVGAVHGDLGQIAREKALAGFR 340

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G + ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G A TLV  +
Sbjct: 341 SGKVDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAITLVDWD 400

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           D+     I+K +             +  P+E    + H +  ++  IP  + G  R+ + 
Sbjct: 401 DVPRWQLIDKALAL----------GVPDPVETYSSSPHLY--EDLGIPTDAKGSIRKPRA 448

Query: 413 YSSQKSHIPLKESEKISK 430
               K H     +EK  K
Sbjct: 449 ERPAKEHKDAPAAEKSEK 466


>gi|153006338|ref|YP_001380663.1| DEAD/DEAH box helicase domain-containing protein [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029911|gb|ABS27679.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp.
           Fw109-5]
          Length = 455

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 142/390 (36%), Positives = 213/390 (54%), Gaps = 10/390 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L LSP+ + A+  AG+  PTPIQ + IP  L   DV G A TGTGKTA+F+LP++ 
Sbjct: 5   SFAELHLSPEALAALRRAGFEHPTPIQAQAIPPALAGKDVIGTAATGTGKTAAFLLPLID 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L          R L+L PTRELA Q+ +  E++G    +  A++IGG+    Q + L +
Sbjct: 65  RLAG----KPGTRALVLAPTRELALQIGEELERFGHARRVRGAVIIGGVGMAQQAEALRQ 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             +++I TPGR++DH  +G   ++ IE LV+DEADRMLDMGF P +  I   +P  RQTL
Sbjct: 121 KREIVIATPGRLVDHLEQGNARLDGIEALVLDEADRMLDMGFKPQLDRILRRLPKQRQTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+      F +   R  V    + + T             +   L   L   
Sbjct: 181 LFSATMAGEVAD----FARAHLRDPVRVEVARSGTTAARAEQQVFLADQHEKLPLLLTLL 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + +IF   K+    +   + + G  V  IH +  Q  R   L  FK+GT +++VA
Sbjct: 237 ERDGDSTLIFTRTKRRADKIWKHIGRAGHKVARIHADRSQAQRRMALDGFKDGTYRVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ ++GHV NFD+P+  E+Y+HR+GRT RA   G+A +  A ++   + AIE
Sbjct: 297 TDIAARGIDVAEIGHVVNFDLPHVPEDYVHRVGRTARAAASGRASSFSAPDERDLLHAIE 356

Query: 362 KLIEKKVDW--LNGDLSSLNPPLEKIDIAQ 389
           +L    +    +  D  +    L++   AQ
Sbjct: 357 RLTRAVLPRAPVPRDAETFQSELKRAAAAQ 386


>gi|317106728|dbj|BAJ53224.1| JHL06P13.3 [Jatropha curcas]
          Length = 455

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 158/376 (42%), Gaps = 3/376 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D+G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 49  FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 108

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V                   + F  Y  +  + V      I       K E  
Sbjct: 109 IEPVAGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKDILKNECP 168

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L N    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 169 HIVVGTPGRILALARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 228

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  I V+  +               +  K        L   
Sbjct: 229 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEMEKNR--KLNDLLDA 286

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L +  F    IH  + Q  R+     FKEG  +++VA+
Sbjct: 287 LDFNQVVIFVKSVNRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVAT 346

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKHIDAIE 361
           DL  RG+DI  V  V N+D+P+ A+ Y+HR+GR GR G  G A T V+   D   ++ ++
Sbjct: 347 DLVGRGIDIERVNIVVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQ 406

Query: 362 KLIEKKVDWLNGDLSS 377
              E  +  L   + +
Sbjct: 407 ARFEVDIKELPEQIDT 422


>gi|313884071|ref|ZP_07817837.1| DEAD-box ATP-dependent RNA helicase CshB [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620518|gb|EFR31941.1| DEAD-box ATP-dependent RNA helicase CshB [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 451

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 131/458 (28%), Positives = 216/458 (47%), Gaps = 19/458 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L   +  A+ +A +   TP+Q + IP  L+  D+   +QTG+GKT +F+LP+L
Sbjct: 1   MLFKDLHLKEYIQIALNEANFTTMTPVQTEVIPQALKGEDLIVQSQTGSGKTHAFLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + +    V+     I  P+RELA Q+        +  +  + L       + Q +  +
Sbjct: 61  QNINEDVQEVQAV---ITAPSRELATQLYQVASSLIQAADKPIRLENYIGGTDKQRQLDQ 117

Query: 121 ----RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
               +   ++I TPGRI D  +   L +   +ILV+DEAD  LD+GF+  +  I S +P 
Sbjct: 118 LGPDKQPQLVIGTPGRIFDLMSDNALWVQTAKILVVDEADMTLDLGFLKIVDEIASRMPQ 177

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q + FSAT+  EL+     ++  PK + +      +ETI            K    L 
Sbjct: 178 DLQMMAFSATVPQELRVFLNKYMVAPKVVTIKPKQVISETI---ENYLINTKGKSREELT 234

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L +       ++FCN K     +   L+++G  V  IHG+I  R R +++   +    
Sbjct: 235 YQLLTMGQPYLALVFCNTKAYADQMSLFLKEKGLKVATIHGDISSRERKRVMKQIQNLDF 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VA+DLAARG+DIP    V N ++P   E ++HR+GRTGR G  G+AFT V  +D + 
Sbjct: 295 QYVVATDLAARGIDIPGTSLVINTELPMELEYFVHRVGRTGRNGLEGRAFTFVTPDDDQA 354

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR----KNNPIPQKSTGFDRRKKN 412
           +  +E +    V++   +L        K   ++         K +P  +     +++KK 
Sbjct: 355 VSDLEAM---GVEFEPVELRQGQLVEVKHRDSRKRRQDTANVKEDPKVRAMINQNKKKKV 411

Query: 413 YSSQKSHIPLK-ESEKISKLQQDIQ-ENDADSLGFRGN 448
               K  +  K +  + +K +QD Q E  +     R N
Sbjct: 412 KPGYKRKLNWKIKEHRQAKAKQDRQAEKRSQKAARRKN 449


>gi|257141454|ref|ZP_05589716.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264]
          Length = 465

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 156/449 (34%), Positives = 227/449 (50%), Gaps = 18/449 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   GY   TPIQ  ++P+ L  HD+   A++G+GKTA+F L +L  
Sbjct: 10  FSALPLTPATLANLAQLGYTVMTPIQAASLPIALAGHDLITHAKSGSGKTAAFSLALLAR 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + L+L PTRELA QVA    +  +       L +  G P   Q + LE 
Sbjct: 70  LDA---RRFDVQALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH +RG L ++ +  LV+DEADRMLDMGF   I  +  L P TRQTL
Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K+S+ F     R                    Y     +      LL  
Sbjct: 187 LFSATYPDGIAKLSQQF----LRNPKEVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLK 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 243 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + AIE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 362

Query: 362 KLIEKKVDWLN-GDLSS-----LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS- 414
           + + + V+W    +L +     L PP+E + I      RK+   P    G       +S 
Sbjct: 363 QALGRDVEWHPLAELKADGNEPLLPPMETLQIL---GGRKDKIRPGDVLGALTGDAGFSG 419

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSL 443
           SQ   I + E      L++ I  +    L
Sbjct: 420 SQIGKINVTEFSTYVALERGIARDALRKL 448


>gi|225713468|gb|ACO12580.1| ATP-dependent RNA helicase DBP4 [Lepeophtheirus salmonis]
          Length = 491

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 111/438 (25%), Positives = 201/438 (45%), Gaps = 11/438 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  +   +   +    +  PT IQ KTIP +L+ HDV  IA+TG+GKT  FV+P++
Sbjct: 54  ITFDDFIIHKTLKENLKKNNFENPTEIQKKTIPAILESHDVISIAKTGSGKTICFVVPII 113

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + + +          LI+ PTRELA Q  +  +K   N  +    +IGGI F+ +   +E
Sbjct: 114 SRILENFNEDDKLSALIITPTRELAVQTYELIKKLTVNTKIKSFNVIGGIKFKKETYHVE 173

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++      +        L    +++LV+DE D+M+++GF   I++I   +P T++ 
Sbjct: 174 AAHILICTPGRLLQHFSELPNLRTELLDVLVLDEFDKMIELGFKEAIKDIIEYLPDTQRV 233

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLL 239
           LL          K      +  K  +    S  ++     F        K          
Sbjct: 234 LL------SATFKHCNFSQEIVKLTDPKIFSDFSKNDVTNFYKILKSTEKINYLYSLLSH 287

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+   +  I+F +  K          K       +  ++ Q+SR+K  S F++    ++
Sbjct: 288 ISKSDNRKVIVFFSTCKGAKFHYLLFSKFFKDTFMLSSSVKQQSRLKNYSQFRDMMSGIL 347

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
             +DLAARGLD P+V  V  FD P+  E YIHRIGRT R G+ G +F  + +++ + ++ 
Sbjct: 348 FCTDLAARGLDFPNVSTVIQFDCPDTPETYIHRIGRTARIGKSGSSFIFLLEKEERLLNF 407

Query: 360 IEKL-IEK-KVDWLNGDLSSLNP-PLEKIDIAQHNHARKNNPIPQKSTGFDRR-KKNYSS 415
           +E + +EK ++     +L+ +    + ++D   +   R +  +   ++ +    KK    
Sbjct: 408 LENINLEKSEIQQTKIELAEIEKFGIRRLDTKLNGIFRNDRELKLFASKYRVTYKKVLML 467

Query: 416 QKSHIPLKESEKISKLQQ 433
                 +   E+IS+L++
Sbjct: 468 NNKKFKVDVEEEISQLRK 485


>gi|126324487|ref|XP_001378612.1| PREDICTED: similar to ATP-dependent RNA-helicase [Monodelphis
           domestica]
          Length = 895

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 127/366 (34%), Positives = 196/366 (53%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F++PM   
Sbjct: 126 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFEK 185

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 186 LKAHSAQTGA-RALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHEN 244

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + +++  V DEADR+ +MGF   +Q I   +P   QT+L
Sbjct: 245 PDIIIATPGRLMHVAVEMNLKLQSVQYAVFDEADRLFEMGFAEQLQEIMGRLPEDHQTVL 304

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +   E ++  F     +  K   LL  L    
Sbjct: 305 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTAF-FHVRRDDKPAVLLHVLRNLV 363

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K     L   L  QG     I+  +DQ +R   L+ F  G    ++ +
Sbjct: 364 RPQDQTVVFVATKHEAEYLTELLTAQGVGCTHIYSALDQTARKINLARFVHGKCSALIVT 423

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIP + +V NF+ P +++ ++HR+GR  RAGR G A++LVA +++ ++  +  
Sbjct: 424 DVAARGLDIPLLDNVVNFNFPAKSKLFLHRVGRVARAGRSGTAYSLVAPDEVPYVFDLHL 483

Query: 363 LIEKKV 368
            +++ +
Sbjct: 484 FLDRPL 489


>gi|8489871|gb|AAF75791.1|AF271892_1 DEAD box protein P68 [Pisum sativum]
          Length = 622

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 128/372 (34%), Positives = 194/372 (52%), Gaps = 9/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L P ++  +    Y +P+ IQ + +P+ L   D+ G A+TG+GKTA+F +PML 
Sbjct: 119 SFNDMCLHPSIMKDIAYHEYTRPSSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMLQ 178

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
               +    R   P  L+L PTRELA Q+    + + ++       +++GG   E Q  +
Sbjct: 179 HCLVQPPIRRGDGPLALVLAPTRELAQQIEKEVQAFSRSLESLKNCIVVGGTNIEKQRSE 238

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G ++ + TPGR +DH  +G   ++ I  +V+DEADRMLDMGF P I+ I   +P   
Sbjct: 239 LRAGVEIAVATPGRFIDHLQQGNTSLSRISYVVLDEADRMLDMGFEPQIREIMRSLPEKH 298

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC------FVATYAQYSKKC 232
           QTLLFSATM  E++ +++ +L NP +++V   SS    +                     
Sbjct: 299 QTLLFSATMPVEIEALAKEYLANPVQVKVGKVSSPTTNVSQTLVKVSGSEKIDRLLDLLV 358

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
               Q  +        I+F  +K     +  +L  QG S  ++HG   Q  R   L NF+
Sbjct: 359 EEASQAEKCGHRFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGHSQNEREAALQNFR 418

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
             +  ++VA+D+A+RGLD+  V HV N D+P   E+YIHRIGRTGRAG  G A +     
Sbjct: 419 SSSTSILVATDVASRGLDVTGVSHVINLDLPKTTEDYIHRIGRTGRAGSTGIATSFYTDR 478

Query: 353 DIKHIDAIEKLI 364
           D+  +  I K I
Sbjct: 479 DMFLVTNIRKAI 490


>gi|258645737|ref|ZP_05733206.1| ATP-dependent RNA helicase DeaD [Dialister invisus DSM 15470]
 gi|260403106|gb|EEW96653.1| ATP-dependent RNA helicase DeaD [Dialister invisus DSM 15470]
          Length = 424

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 127/410 (30%), Positives = 206/410 (50%), Gaps = 9/410 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F  LG+   +  A+   G   PT IQ  +IP + +  D+ G ++TGTGKT +++LP+
Sbjct: 1   MNAFIKLGVIEPLAQALYQQGIRFPTVIQQASIPAIFKGKDIIGRSETGTGKTLAYLLPL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  ++    +    + LI+ PTRELA Q+ D    +       VA +IGG   E Q +KL
Sbjct: 61  VQRVDV---KKGGTQVLIMTPTRELAKQIFDVLRPFAILMEADVADIIGGRTIENQIQKL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +R   ++I TPGR+LDH  R  L ++ ++ +V+DEAD+ML  GF   I  +    P  RQ
Sbjct: 118 KREPHIIIGTPGRLLDHIRRRSLDLSGVKTVVLDEADQMLAAGFREDIDALVDETPKKRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSATM  E +K++  ++++    +V   +  +   +  +               + +
Sbjct: 178 VLLFSATMPPEAKKLAHKYMKSAVVADVAEKAVASTVEQRVYETVKTHKFSLLVRHLKEI 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   +    ++          E+    V  IHGN+ Q  R +++  F++   Q++
Sbjct: 238 NPYMAV---VFCNTREGAHELAGRLQEETDLVVDEIHGNMSQGQRNQVIREFEKARTQVL 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+  + HVFN+D+P   E YIHRIGRTGRAG  G + T    EDI  +  
Sbjct: 295 VASDIAARGLDVEGITHVFNYDIPRNLEYYIHRIGRTGRAGTQGVSITYATPEDILLLRK 354

Query: 360 IEKLIEKKVDWL--NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           +EK I++ +      G++  +  P  K  +      +       K  G  
Sbjct: 355 LEKAIKEIITKYDEKGNIRRIKGPSAKKKVILPGMYKPTKKKEHKVLGHK 404


>gi|156550342|ref|XP_001606676.1| PREDICTED: similar to ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 425

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 91/375 (24%), Positives = 166/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 45  FRDFLLKPEILRAISDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 104

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY     ++V      I  + +  K    
Sbjct: 105 LELAENQVLVLVMCHTRELAFQISKEYERFSKYIPQVKVSVFFGGLPIQKDEEVLKNTCP 164

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L N    ++ +    +  +     +Q I    P  +Q ++
Sbjct: 165 HIVVGTPGRILALIRSKKLNLKNLKHFILDECDKMLEQLDMRKDVQEIFRSTPHNKQVMM 224

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  + V+  +               +  K   L +      
Sbjct: 225 FSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFEL--LDI 282

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F    IH  + Q  R+     FK+   +++VA+
Sbjct: 283 LEFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMTQEERLTKYQAFKDFQKRILVAT 342

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A TLV+ E D K ++ ++
Sbjct: 343 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITLVSDEADAKILNDVQ 402

Query: 362 KLIEKKVDWLNGDLS 376
           +  +  +  L  ++ 
Sbjct: 403 ERFDVNITELPDEID 417


>gi|254573064|ref|XP_002493641.1| Putative nucleolar DEAD box RNA helicase [Pichia pastoris GS115]
 gi|238033440|emb|CAY71462.1| Putative nucleolar DEAD box RNA helicase [Pichia pastoris GS115]
 gi|328354532|emb|CCA40929.1| RNA Helicase [Pichia pastoris CBS 7435]
          Length = 766

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 124/473 (26%), Positives = 223/473 (47%), Gaps = 27/473 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L LS + +  +  A +++ T IQ + IP  LQ  D+ G A+TG+GKT +F++P + 
Sbjct: 43  KFSELPLSRQTLIGLRGAHFIEMTGIQKEAIPPALQGQDILGAAKTGSGKTLAFLIPLIE 102

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L +          LI+ PTRELA Q+ +     GK+ + +  L+IGG  F+ +++++ 
Sbjct: 103 MLLREDWNEFDGVGALIISPTRELAMQIYEVLLNIGKHSSFSCGLVIGGKDFKYESERIG 162

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      +        L +NN+++L++DEADR+LDMGF   + +I S +P  RQT
Sbjct: 163 KINVLIGTPGRLLQHMDQSANLNINNLQMLILDEADRILDMGFKKTLDSIISSIPPQRQT 222

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT T  +Q ++   L NPK I  ++    A              ++K   L   ++
Sbjct: 223 LLFSATQTKSVQDLARLSLTNPKYINSSSDLDLATPDSLEQSYIVVPLNEKINTLWSFIK 282

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG-TIQLM 299
           +    K  +   + K+         + Q            +++     +          +
Sbjct: 283 THLKSKILVFLSSSKQVHFLYEAFRKLQPGISLMKLHGRQKQTARIETTVKFSHAQHCCL 342

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+ ARGLD P +  V   D P  A  YIHR+GR  RAG+ GK+  ++   +      
Sbjct: 343 FATDVVARGLDFPAIDWVVQLDCPEDASTYIHRVGRCARAGKEGKSLLILTPSE------ 396

Query: 360 IEKLIEKKVDWLN-GDLSSLNPPLEKIDIAQHNHARKNNPIPQ-KSTGFDRRKKNYSSQK 417
            E+   ++++  N  ++S LN             A+K    PQ ++  F   +  Y  QK
Sbjct: 397 -EEAFVRRLEAKNIKNISKLNV----------RGAKKKTIEPQMQALCFKSPELKYLGQK 445

Query: 418 SHIP------LKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
           + I       +++ +++ ++Q+   E  A SLG  G     +L K+   + ++
Sbjct: 446 AFIAYFKSVFIQKDKEVFQVQKLPVEEYAKSLGLPGAPKIKLLEKSAKAMTEE 498


>gi|22126413|ref|NP_669836.1| ATP-dependent RNA helicase DbpA [Yersinia pestis KIM 10]
 gi|45441434|ref|NP_992973.1| ATP-dependent RNA helicase DbpA [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108807144|ref|YP_651060.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Antiqua]
 gi|108812508|ref|YP_648275.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Nepal516]
 gi|145598635|ref|YP_001162711.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Pestoides F]
 gi|149366275|ref|ZP_01888310.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125]
 gi|162421745|ref|YP_001606136.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Angola]
 gi|165928002|ref|ZP_02223834.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938672|ref|ZP_02227227.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010820|ref|ZP_02231718.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166210580|ref|ZP_02236615.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167402150|ref|ZP_02307625.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167420322|ref|ZP_02312075.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425805|ref|ZP_02317558.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467438|ref|ZP_02332142.1| ATP-independent RNA helicase DbpA [Yersinia pestis FV-1]
 gi|218928898|ref|YP_002346773.1| ATP-dependent RNA helicase DbpA [Yersinia pestis CO92]
 gi|229896216|ref|ZP_04511386.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|229897150|ref|ZP_04512306.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229897877|ref|ZP_04513028.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229902891|ref|ZP_04518008.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|270486675|ref|ZP_06203749.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294504053|ref|YP_003568115.1| ATP-dependent RNA helicase [Yersinia pestis Z176003]
 gi|21959402|gb|AAM86087.1|AE013856_1 ATP-dependent RNA helicase [Yersinia pestis KIM 10]
 gi|45436295|gb|AAS61850.1| ATP-dependent RNA helicase [Yersinia pestis biovar Microtus str.
           91001]
 gi|108776156|gb|ABG18675.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|108779057|gb|ABG13115.1| ATP-dependent RNA helicase [Yersinia pestis Antiqua]
 gi|115347509|emb|CAL20417.1| ATP-dependent RNA helicase [Yersinia pestis CO92]
 gi|145210331|gb|ABP39738.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides F]
 gi|149292688|gb|EDM42762.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125]
 gi|162354560|gb|ABX88508.1| ATP-independent RNA helicase DbpA [Yersinia pestis Angola]
 gi|165913286|gb|EDR31908.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920059|gb|EDR37360.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990164|gb|EDR42465.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166207760|gb|EDR52240.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166962017|gb|EDR58038.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048425|gb|EDR59833.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055204|gb|EDR65001.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229680338|gb|EEO76437.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|229688918|gb|EEO80983.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229693487|gb|EEO83536.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701139|gb|EEO89168.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|262361760|gb|ACY58481.1| ATP-dependent RNA helicase [Yersinia pestis D106004]
 gi|262366103|gb|ACY62660.1| ATP-dependent RNA helicase [Yersinia pestis D182038]
 gi|270335179|gb|EFA45956.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294354512|gb|ADE64853.1| ATP-dependent RNA helicase [Yersinia pestis Z176003]
 gi|320015493|gb|ADV99064.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 460

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 125/374 (33%), Positives = 201/374 (53%), Gaps = 8/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L 
Sbjct: 5   SFSSLTLPAEQLSNLNELGYTEMTPVQAAVLPAILNGQDVRAKAKTGSGKTAAFGIGLLD 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            +  G     + + L+L PTRELA QV+    +  +       L + G  P   Q   L 
Sbjct: 65  KIAVGE---FVTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLV 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRI +H  +  L+++ ++ LV+DEADRMLDMGF   I ++ +  P  RQT
Sbjct: 122 HAPHIVVGTPGRIQEHLRKKTLVLDELKTLVLDEADRMLDMGFSDAIDDVIAYTPPQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++         +R  +N      +         +    +K   L   + 
Sbjct: 182 LLFSATYPSGIEQ----ISARVQRQPLNVEVGDTDEEPAIEQVFFETTREKRLPLLISVL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+  ++  SLE +G SV A+HG+++QR R ++L  F   + +++V
Sbjct: 238 SHYQPASCVVFCNTKKDCQSVYESLESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+  V NF++    E +IHRIGRTGRAG  G A +L   +++     I
Sbjct: 298 ATDVAARGLDIKDLELVINFELAFDPEIHIHRIGRTGRAGMSGLAVSLCTPQEMVRAHTI 357

Query: 361 EKLIEKKVDWLNGD 374
           E  ++ K+ W   +
Sbjct: 358 EDYLQIKLKWTPAE 371


>gi|217974215|ref|YP_002358966.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217499350|gb|ACK47543.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 412

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 171/415 (41%), Positives = 234/415 (56%), Gaps = 18/415 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L+  +V  +   GY  PTPIQ++ IP +L + DV   AQTGTGKTA+F LP+L
Sbjct: 1   MSFSVLSLNSTLVNTLASLGYESPTPIQLEAIPAILAKRDVMAGAQTGTGKTAAFALPIL 60

Query: 61  TI-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                    +    VR  R L+L PTRELA QV  +F KY K  ++ V +  GG+  +AQ
Sbjct: 61  HHLLALSPLQELTAVRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDAQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
                 G DVLI TPGR+LDH  +G L +  + +LV DEADRMLDMGF+  IQ +   VP
Sbjct: 121 VAVFNAGIDVLIATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT+   +  +S+  L++PK IEV   ++TA  IE    A  A    +    
Sbjct: 181 SDRQTLLFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDADRKTELVSH 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                        +IF   K+ V  L   L K      A HG++ Q +R K+L  FK+G 
Sbjct: 241 L---VRSKNWHQVLIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQGK 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           IQ++VA+D+AARGLDI ++ +V NF++P  AE+YIHRIGRTGRAG  G A TL ++ED  
Sbjct: 298 IQVLVATDVAARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSTGLAITLFSQEDAL 357

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
            ++ +E +++K++   WL G      P   K+D       R+N    QK     R
Sbjct: 358 LLEEVEVVLDKRLPQQWLTG----FEPDFNKMDA----EPRRNGKAAQKQRAKKR 404


>gi|268553635|ref|XP_002634804.1| Hypothetical protein CBG13909 [Caenorhabditis briggsae]
          Length = 845

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 113/393 (28%), Positives = 191/393 (48%), Gaps = 27/393 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +  LGL   +  A+   G+ +PTPIQ KTIP ++   DV  +++TG+GKTA+FV+PML  
Sbjct: 26  WQQLGLDHTIFKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +    R L++ PTRELA Q     ++ G+   L  A L+GG   E Q   +   
Sbjct: 86  LKGRDTKG--IRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDVLEDQFSTIHEN 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+L       L +  ++ +V DEADR+ +MGF   +      +P +RQTLL
Sbjct: 144 PDILLATPGRLLHVIVEMDLRLQFVQYVVFDEADRLFEMGFQDQLTETLKRIPESRQTLL 203

Query: 183 FSATMTDELQK-------------------------VSENFLQNPKRIEVNTPSSTAETI 217
           FSAT+   L                           +     +  +++ +       E +
Sbjct: 204 FSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPDEKLALLHLCRIFEIL 263

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
           +           +K        +     K  ++FC   K+V  +   L + G     ++ 
Sbjct: 264 KIFQKFWKFGNFEKSEFRFFSRRMDRENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYS 323

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
            +D  +R + +  F E    ++V +D+AARG+DIP +  V N   P++A+ Y+HR+GR  
Sbjct: 324 QLDATARKQNIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPSKAKLYVHRVGRVA 383

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           RAGR G A +L+A +++ ++  +   + K + +
Sbjct: 384 RAGRSGTAISLIANDELPYLTDLFMFLGKPIKF 416


>gi|289619768|emb|CBI54051.1| unnamed protein product [Sordaria macrospora]
          Length = 507

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 122/409 (29%), Positives = 197/409 (48%), Gaps = 26/409 (6%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           G+   +  A    GY  PTPIQ ++IPL LQ  D+ GIA+TG+GKTA+F LP+L  L   
Sbjct: 103 GIVDALCEACERLGYKNPTPIQAESIPLALQNRDIIGIAETGSGKTAAFALPILQALLD- 161

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LERGADV 125
             + +    L+L PTRELAAQ+A  FE  G   +L  AL++GG+    Q     ++   +
Sbjct: 162 --KPQPLFALVLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMVTQAIALGKKPHVI 219

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           +      +          + +++ LV+DEADR+LDM F P ++ I   +P  R+T LFSA
Sbjct: 220 VATPGRLLDHLEKTKGFSLRSMQYLVMDEADRLLDMDFGPILEKILKFLPRERRTFLFSA 279

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           TM+ +++ +    L++P ++ V+T      +             K   L+         +
Sbjct: 280 TMSSKVESLQRASLRDPLKVSVSTNKYATVSTLKSNYVFIPHMHKDTYLV--------YL 331

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
            N  +      +      S             N            F+ G+ +++VA+D+A
Sbjct: 332 CNDALPSCSAPSAWEPSPSTVVSRSPSRLGALNK-----------FRAGSREILVATDVA 380

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARGLDIP+V  V N D+P  ++ Y+HR+GRT RAG+ G A ++V + D++    IE  + 
Sbjct: 381 ARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYDLEIWLRIEAALG 440

Query: 366 KKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            K+D    +   +    P +E+      N  +       K  G  +RK+
Sbjct: 441 HKLDEYPLEKDEVMVFKPRVEEAQRHARNEMKSLMENQGKHGGILKRKR 489


>gi|88803270|ref|ZP_01118796.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
 gi|88780836|gb|EAR12015.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
          Length = 609

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 135/371 (36%), Positives = 211/371 (56%), Gaps = 8/371 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F +LGL   +  A+ D GY +PT IQ K IP ++    D+   AQTGTGKTA+F LP+L
Sbjct: 3   TFLELGLKEPINKALTDLGYEQPTVIQEKAIPQIISSRSDLKAFAQTGTGKTAAFSLPIL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
            +L+     V+     IL PTRELA Q+ +N + + K         + G    E Q + L
Sbjct: 63  ELLDSNSGNVQAI---ILSPTRELAVQIGNNIKDFCKYLPDVKVTTVYGGSSMEDQIRSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG+ +++ TPGR +D   R  L + N++ LV+DEAD ML+MGF   +  +    P T+Q
Sbjct: 120 KRGSQIVVGTPGRTVDLIKRRALKLGNVKWLVLDEADEMLNMGFKDELDKVLEATPDTKQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   E++ +++N++  P  I     +  A+++ H     Y+   +      + +
Sbjct: 180 TLLFSATFPKEVESIAKNYMTKPVEITSGQKNQGADSVSH---EYYSVTERTRYPALKRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIFC  ++    +  +L K G+S  A+HG++ Q  R  ++  F++ TIQ++
Sbjct: 237 ADLNPDIYAIIFCRTRRETQEVADNLIKDGYSADALHGDLSQGQRDSVMGKFRKKTIQIL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ ++ HV N  +P++ ENY HR GRTGRAG  G +  LV  ++   +  
Sbjct: 297 VATDVAARGLDVTELTHVINHKLPDQIENYTHRSGRTGRAGNTGISIVLVNGKEKGKLRP 356

Query: 360 IEKLIEKKVDW 370
           IEK+I+KK   
Sbjct: 357 IEKIIQKKFTE 367


>gi|255555929|ref|XP_002519000.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223541987|gb|EEF43533.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 534

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 193/413 (46%), Gaps = 12/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++  L   V+       +  P+PIQ    P +L   D  GIA+TG+GKT ++ +P + 
Sbjct: 117 SFSESNLPDNVLKCCQS--FKNPSPIQAHAWPFLLDGRDFIGIAKTGSGKTLAYGIPAVM 174

Query: 62  ILEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +   R         P  L+L PTRELA Q++      G+   +    L GG     Q  
Sbjct: 175 HVLSKRKGASANSVNPLCLVLAPTRELADQISVVLRDAGEPCGVRSVCLYGGTSKGPQIS 234

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G D++I TPGR+ D        +  +  LV+DEADRMLDMGF   +++I S     
Sbjct: 235 SLKSGVDIVIATPGRLKDLIEMNICHLMEVSFLVLDEADRMLDMGFRQEVRSILSKTCSA 294

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALL 235
           RQ ++FSAT   ++  ++E ++       V  +  ++    +             K  L 
Sbjct: 295 RQMIMFSATWPLDVHNLAEEYMDRNPIKVVVGSEDTAANHDVMQIVEVLDDHLRDKRLLA 354

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 +      ++F   +K    L   L + G++V +IHGN  Q  R K LS FK+G+
Sbjct: 355 LLEKYHKTQRNRVLVFALYQKEAERLDGMLHRSGWNVVSIHGNKAQEQRTKALSLFKKGS 414

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             LMVA+D+AARGLD+PDV  V N+  P   E+Y+HRIGRTGRAG+ G A T     +  
Sbjct: 415 CPLMVATDVAARGLDVPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTHHNKG 474

Query: 356 HIDAIEKLIEKKVDWLNGDL----SSLNPPLEKIDIAQHNHARKNNPIPQKST 404
               +  ++ +    +   L    + +     K+  A       + P  +K T
Sbjct: 475 LAGELVNVLREAGQVVPDALLKFGTHVKKKESKLYGAHFREISADAPKAKKIT 527


>gi|302521780|ref|ZP_07274122.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces sp.
           SPB78]
 gi|302430675|gb|EFL02491.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces sp.
           SPB78]
          Length = 485

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 133/374 (35%), Positives = 209/374 (55%), Gaps = 10/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+ P+   A+   G V P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L 
Sbjct: 10  TFRDLGILPETAEALEAVGIVSPFPIQSLTLPVALSGSDVIGQAKTGTGKTLGFGLPLLE 69

Query: 62  ILE----------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
            +                   P+ L++ PTREL  QV ++ +  GK  ++ V  + GG  
Sbjct: 70  RVTVSADVEAGRATPDKLSEAPQALVVVPTRELCTQVTNDLQTAGKVRDVRVLAIYGGRA 129

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q + L++G DV++ TPGR+LD   + KL ++ +  LV+DEAD MLD+GF+P ++ I 
Sbjct: 130 YEPQVEALKKGVDVVVGTPGRLLDLAGQRKLDLSKVRALVLDEADEMLDLGFLPDVEKIV 189

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +++P  RQT+LFSATM   +  ++  ++  P  I   +P     T+ +     +  +S  
Sbjct: 190 AMLPVKRQTMLFSATMPGAVVALARRYMSQPTHINATSPDDENATVANTEQHVFRAHSMD 249

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              +   +   +     +IFC  K+   ++   L+++GF+  A+HG++ Q +R + L  F
Sbjct: 250 KPEMVARILQAEGRGLVMIFCRTKRTAADISEQLQRRGFAAGAVHGDLGQGAREQALRAF 309

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAGR G A TLV  
Sbjct: 310 RNGKVDVLVCTDVAARGIDVEGVTHVINYQTPEDEKTYLHRIGRTGRAGRSGTAVTLVDW 369

Query: 352 EDIKHIDAIEKLIE 365
           +DI     I K + 
Sbjct: 370 DDIPRWQLINKALG 383


>gi|294461150|gb|ADE76139.1| unknown [Picea sitchensis]
          Length = 427

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 159/376 (42%), Gaps = 3/376 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D+G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 48  FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V                   + F  Y  +  + V      I       K E  
Sbjct: 108 IEPVAGQVAALVLCHTRELAYQICHEFERFITYLTDLKVAVFYGGVNIKTHKSLLKNECP 167

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +     +   L N    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 168 HIVVGTPGRILALAREKDLNLKNVRHFILDECDRMLESLDMRKDVQEIFKMTPHDKQVMM 227

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  I V+  +              ++  K        L   
Sbjct: 228 FSATLSKEIRPVCKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNR--KLNDLLDA 285

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L +  F    IH  + Q  R+     FKEG  +++VA+
Sbjct: 286 LDFNQVVIFVKSVNRAAELNKLLVECNFPSICIHSGMTQEERLTRYKGFKEGHKRILVAT 345

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKHIDAIE 361
           DL  RG+DI  V  V N+D+P+ A+ Y+HR+GR GR G  G A T V+   D   ++ ++
Sbjct: 346 DLVGRGIDIERVNIVVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQ 405

Query: 362 KLIEKKVDWLNGDLSS 377
           +  E  +  L   + +
Sbjct: 406 ERFEVDIKELPAQIDT 421


>gi|153947047|ref|YP_001401319.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis IP
           31758]
 gi|170024671|ref|YP_001721176.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis YPIII]
 gi|152958542|gb|ABS46003.1| ATP-independent RNA helicase DbpA [Yersinia pseudotuberculosis IP
           31758]
 gi|169751205|gb|ACA68723.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           YPIII]
          Length = 460

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 124/374 (33%), Positives = 201/374 (53%), Gaps = 8/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L 
Sbjct: 5   SFSSLTLPAEQLSNLNELGYTEMTPVQAAVLPAILNGQDVRAKAKTGSGKTAAFGIGLLD 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            +  G     + + L+L PTRELA QV+    +  +       L + G  P   Q   L 
Sbjct: 65  KIAVGE---FVTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLV 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRI +H  +  L+++ ++ LV+DEADRMLDMGF   I ++ +  P  RQT
Sbjct: 122 HAPHIVVGTPGRIQEHLRKKTLVLDELKTLVLDEADRMLDMGFSDAIDDVIAYTPPQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++         +R  +N      +         +    +K   L   + 
Sbjct: 182 LLFSATYPSGIEQ----ISARVQRQPLNVEVGDTDEEPAIEQVFFETTREKRLPLLISVL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+  ++  SLE +G SV A+HG+++QR R ++L  F   + +++V
Sbjct: 238 SHYQPASCVVFCNTKKDCQSVYESLESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+  V NF++    E ++HRIGRTGRAG  G A +L   +++     I
Sbjct: 298 ATDVAARGLDIKDLELVINFELAFDPEIHVHRIGRTGRAGMSGLAVSLCTPQEMVRAHTI 357

Query: 361 EKLIEKKVDWLNGD 374
           E  ++ K+ W   +
Sbjct: 358 EDYLQIKLKWTPAE 371


>gi|198413153|ref|XP_002124718.1| PREDICTED: similar to GE24123 [Ciona intestinalis]
          Length = 573

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 128/424 (30%), Positives = 198/424 (46%), Gaps = 12/424 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           +DF++L  S  +   +  + +  PT IQ    P  L   DV GIAQTG+GKT SF+LP  
Sbjct: 146 LDFSELQFSDHIDSKLRQSNFNVPTAIQSTGWPATLSGRDVIGIAQTGSGKTLSFILPAL 205

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +    ++   R   P  L++ PTRELA Q      ++     +  A   GG     Q  K
Sbjct: 206 IHIQAQRPLGRGEGPIALVMCPTRELAVQCERVANQFA-GPFIRTACAYGGSSRNIQLDK 264

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +  G  +L+ TPGR++D    G++ +     LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 265 IGAGCSILVATPGRLMDFLQHGEVNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 324

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNT---------PSSTAETIEHCFVATYAQYS 229
           Q  ++SAT   E+++++++F+       +                  I H          
Sbjct: 325 QVTMWSATWPSEIRQLAKDFISTKSATHIKVGSSDLQASENIQQKFAICHSPDKFKQFKE 384

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
               L              ++FCN K     L   L   G    AIHG+  Q  R  +L+
Sbjct: 385 IIIELKNANKDQFSQFPKTLVFCNTKATCDRLSQQLRNAGLRSNAIHGDKTQSQRDSVLN 444

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           NF+ G   +++A+D+AARGLDI D+ +V NFD P    +YIHRIGRTGRAG+ G ++TL+
Sbjct: 445 NFRRGRSNILIATDVAARGLDINDIQYVINFDTPPTCTDYIHRIGRTGRAGKQGTSYTLL 504

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            +E+   +  +   +E     ++  L  +     +         R      +     +RR
Sbjct: 505 TEENGAIVKDLISSLEVINHEVDPKLHKMQQWWIQNRTKAKPRQRPQTRRFKNDHYNNRR 564

Query: 410 KKNY 413
            ++Y
Sbjct: 565 NRHY 568


>gi|194748100|ref|XP_001956487.1| GF25239 [Drosophila ananassae]
 gi|190623769|gb|EDV39293.1| GF25239 [Drosophila ananassae]
          Length = 535

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 107/431 (24%), Positives = 176/431 (40%), Gaps = 16/431 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F DL     L P++   VL  G+ +PTPIQ++ +P++LQR  +   A TG+GKT +F+ 
Sbjct: 109 SFEDLTKDYKLLPRLQQNVLSRGFAQPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLT 168

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEA 114
           P++  L     +    R L+L PTRELA Q+     +  +   L    +           
Sbjct: 169 PLINGLRA--HKTTGLRALVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHG 226

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
              K      V      R L       L ++ +E  V+DEADR+++ G   + + +  + 
Sbjct: 227 TECKQRYDILVSTPNRVRFLLQQQPPLLDLSQVEWFVLDEADRLMEEGQNNFKEQLDDIY 286

Query: 175 PFTRQT--LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                    +   + T  +             + V        T        +       
Sbjct: 287 AACSNPGKCVAFFSATYTVPVAKWALRHLKNLVRVTIGIQNTATDSVQQELLFVGSESGK 346

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            +  + L  Q      ++F   K     L   L   G +V  IH    Q  R   +  F+
Sbjct: 347 LVAVRDLVRQGLQPPVLVFVQSKDRAKQLFEELLYDGINVDVIHAERSQHQRDNCVRAFR 406

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG+I +++ ++L  RG+D   V  V N+D P    +YIHRIGRTGRAGR G+A T   ++
Sbjct: 407 EGSIWVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQD 466

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ-HNHARKNNPIPQKSTGFDRRKK 411
           D  ++ +I ++I+       G +      ++K+  ++    A+K       ST      K
Sbjct: 467 DTANLRSIAQIIKNS----GGTVPEYMLQMKKVRKSEAKMRAKKPLDREDISTKIRPEGK 522

Query: 412 NYSSQKSHIPL 422
             S Q     L
Sbjct: 523 EESKQNELTEL 533


>gi|194747377|ref|XP_001956128.1| GF25051 [Drosophila ananassae]
 gi|190623410|gb|EDV38934.1| GF25051 [Drosophila ananassae]
          Length = 826

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 119/431 (27%), Positives = 215/431 (49%), Gaps = 3/431 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   GY  PTPIQ KTIPL+L+  DV  +A+TG+GKTA F++P+   
Sbjct: 40  FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++        R LIL PTRELA Q     ++ G+   L   L++GG   ++Q   +   
Sbjct: 100 LQRREPTKGA-RALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHTC 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR L       L +N+IE +V DEADR+ +MGF   +      +P TRQ ++
Sbjct: 159 PDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSTRQMVM 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L   +   L +P  I ++  S   + +            +  AL+  L    
Sbjct: 219 FSATLPKLLVDFARAGLNDPVLIRLDVESKLPDAL-ALKFLYCRPDDRYTALVVLLKYVI 277

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   + +V  + + L   G S  +++ ++D  +R    + F    + +++ +
Sbjct: 278 PQESQTVVFAGTQHHVELISYILTGAGISNTSVYSSLDPAARKINTAKFVSKKVSVLIVT 337

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP + +V N   P + + ++HR+GR  RAGR G A+++ + +D  H+  +  
Sbjct: 338 DVAARGIDIPSLDYVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIFSTDDTAHLLDLHL 397

Query: 363 LIEKKVDWLNG-DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
            + +  +  +   + ++   L + +       +K++ I       +   K Y S +    
Sbjct: 398 FLNRPFNINDSTAMGTIPQDLLEEEHLTVTEIKKSHHIAGVLRTSENAYKKYLSSRPVAS 457

Query: 422 LKESEKISKLQ 432
              + ++ K++
Sbjct: 458 TDANARVKKIK 468


>gi|294666446|ref|ZP_06731689.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292603752|gb|EFF47160.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 458

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 129/381 (33%), Positives = 189/381 (49%), Gaps = 6/381 (1%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F+ L LSP +   +   GY   TPIQ +++P +LQ  DV   A TG+GKTA+F L +
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  L+    R +                        G      V L  G           
Sbjct: 61  LQKLDPALTRAQALVLC-PTRELADQVGKQLRRLATGIPNMKLVVLTGGMPLGPQLASLE 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I S     RQ
Sbjct: 120 AHDPQVVVGTPGRIQELARKLALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT  D ++ ++   L+ P  I V    S  E  +  F        K  A L    
Sbjct: 180 SLLFSATFPDSIRTLARELLKEPVEITVEGADSAPEIDQQFFEVDPTYRQKAVAGLLL-- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ ++FCN +K V  +  SL++ GFS  A+HG+++QR R ++L  F   +  ++
Sbjct: 238 --RFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+HG A +LVA  +     A
Sbjct: 296 VASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARAQA 355

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           +E    + + W    L++  P
Sbjct: 356 LETEQGQPLKWSRAPLATARP 376


>gi|253575601|ref|ZP_04852937.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251844939|gb|EES72951.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 472

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 114/369 (30%), Positives = 204/369 (55%), Gaps = 6/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LG+  ++  A+LD G  +P+P+Q + IP  L+  D+   +QTGTGKT +++LP+L
Sbjct: 4   ITFAGLGIGEQLTAALLDYGISEPSPVQAECIPAALEGRDILAQSQTGTGKTLAYLLPLL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +  G   ++    LIL PT+ELA Q+    EKYG+   +    LIGG   + Q +KL+
Sbjct: 64  QRINPGEKTLQ---GLILAPTQELAMQILREAEKYGEPLGIRSQALIGGAAIKRQLEKLK 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRI +     KL ++ +  +V+DE D+M  +G    +++I       RQ 
Sbjct: 121 LHPQLVVGTPGRIREILALRKLKLHTLLTVVVDEVDQMFQLGGTADVEHILRGTLRDRQL 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +  SAT+  +++ ++   ++ P  I +     T++T+EH     +   ++    + + + 
Sbjct: 181 MFLSATINPDIRALAAKEMKEPLEIGIEPEQRTSKTVEH---LYFVSEARDKIDMLRRIV 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  I+F N    +  +   +   G S  A++G+ D+ +R   L  F+EG I+++V
Sbjct: 238 RHFEPERTIVFINNTDQIAEVEAKMNYVGLSAGALYGDADKTARSLTLQRFREGKIRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDI ++  V N D P  +E+Y+HR+GRTGR GR G A ++V  ++   +   
Sbjct: 298 ASDVAARGLDIENLALVVNLDPPIDSEHYVHRVGRTGRMGRKGLAVSIVTPQEEFIMRKF 357

Query: 361 EKLIEKKVD 369
            + +  +++
Sbjct: 358 ARELGIEIE 366


>gi|325180080|emb|CCA14481.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 594

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 127/425 (29%), Positives = 212/425 (49%), Gaps = 13/425 (3%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR 71
           ++  +  + Y  PT IQ++ IP +L   DV G A TG+GKTA+F++P+L  L +   +  
Sbjct: 178 ILHNIEASEYKDPTAIQMQAIPSMLAGRDVLGTAPTGSGKTAAFLIPILMRLARTHTQAS 237

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
             R++I+ PTRELA Q+     +    Y+L  ++++        ++K     D+LI TP 
Sbjct: 238 -IRSIIVSPTRELAVQIQKELRQLTVGYDL-HSVVLSKTSAVNFSEKPFPKIDILIATPL 295

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY-IQNITSLVPFTRQTLLFSATMTDE 190
           R++    + K+ ++ +E++ +DEADR+ ++GFI    + I S      Q  +FSATM   
Sbjct: 296 RLVHLIQQAKVDLSGVEVITLDEADRLFELGFIDQIDEIIASCTFPDVQRTMFSATMLQG 355

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGII 250
           +++ + + L++P +I V   +S A++I+   +    +  K  A+ Q            ++
Sbjct: 356 VEEAAISVLRDPHKIAVGVKNSGAKSIDQKLMFVGKEEGKLVAMKQLGHIGLQIP--ALL 413

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F   K+ V  L   L   G  V AIH +  Q  R ++L  F+ G I +++ +DL  RGLD
Sbjct: 414 FVQNKERVDELYQELLYDGIHVGAIHADRSQMQRDQVLREFRAGKIWVLICTDLICRGLD 473

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
              V  V N+D P  A +YIHRIGRTGR GR G A T   + D++ +  I  +I+     
Sbjct: 474 FKAVNMVINYDFPQSAISYIHRIGRTGRNGRKGFAVTFFTERDMQFVRPIANVIKLSGQQ 533

Query: 371 LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISK 430
           +   + SL  P       +  H  K  P  Q  T        Y  QK+H  ++  ++   
Sbjct: 534 VPAWMLSLKKPSN----GKRQHLLKAPPKRQHVTTVS----AYDLQKAHKRIQMKKRHQN 585

Query: 431 LQQDI 435
             Q +
Sbjct: 586 RSQAL 590


>gi|118482305|gb|ABK93079.1| unknown [Populus trichocarpa]
          Length = 428

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 92/376 (24%), Positives = 159/376 (42%), Gaps = 3/376 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ +++D+G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 49  FRDFLLKPELLRSIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 108

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V                   + F  Y  +  + V      I       K E  
Sbjct: 109 IEPTSGQVIALVLCHTRELAYQICHEFERFSTYLPDTKVAVFYGGVNIKTHKDLLKNECP 168

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L N    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 169 HIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 228

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  I V+  +               +  K        L   
Sbjct: 229 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNR--KLNDLLGA 286

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L +  F    IH  + Q  R+     FKEG  +++VA+
Sbjct: 287 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVAT 346

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKHIDAIE 361
           DL  RG+DI  V  V N+D+P+ A+ Y+HR+GR GR G  G A T V+   D   ++ ++
Sbjct: 347 DLVGRGIDIERVDIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQ 406

Query: 362 KLIEKKVDWLNGDLSS 377
           +  E  +  L   + +
Sbjct: 407 ERFEVDIKELPEQIDT 422


>gi|50427631|ref|XP_462428.1| DEHA2G20372p [Debaryomyces hansenii CBS767]
 gi|74600402|sp|Q6BH93|HAS1_DEBHA RecName: Full=ATP-dependent RNA helicase HAS1
 gi|49658098|emb|CAG90938.1| DEHA2G20372p [Debaryomyces hansenii]
          Length = 568

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 98/365 (26%), Positives = 167/365 (45%), Gaps = 6/365 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F + GLS   + A+ D G+ K T +Q KTIP +L   DV G A+TG+GKT +F++P + 
Sbjct: 105 NFEEAGLSEPTLKAIKDMGFSKMTQVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 164

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVAD--NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +L   R + R    +++       A        E    +      ++ G    +   K +
Sbjct: 165 MLYSLRFKPRNGTGVVVVSPTRELALQIFGVARELMAHHSQTFGIVIGGANRRQEAEKLM 224

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    ++      +    N    +  N++ LVIDEADR+L++GF   ++ I  ++P   +
Sbjct: 225 KGVNLLIATPGRLLDHLQNTQGFVFKNVKALVIDEADRILEIGFEEEMKQIIKILPNEDR 284

Query: 180 TLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             + FSAT T +++ ++   L+           S A T+           S K  LL   
Sbjct: 285 QSMLFSATQTTKVEDLARISLRPGPLYINVASESEASTVAGLEQGYVVCESDKRFLLLFS 344

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +    V      L      V  +HG   Q+ R      F   T  +
Sbjct: 345 FLKRNVKKKIIVFLSSCNCVKYFGELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNATQGI 404

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR--AGRHGKAFTLVAKEDIKH 356
           ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R  AG+ GK+   +   ++  
Sbjct: 405 LICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTAGK-GKSLMFLTPSELGF 463

Query: 357 IDAIE 361
           +  ++
Sbjct: 464 LRYLK 468


>gi|307181491|gb|EFN69083.1| Probable ATP-dependent RNA helicase DDX23 [Camponotus floridanus]
          Length = 669

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 133/436 (30%), Positives = 216/436 (49%), Gaps = 40/436 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + G   +++  +   GY   TPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L 
Sbjct: 242 SWKESGFPKEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLL 301

Query: 62  ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +             + P ++IL PTRELA Q+ +   K+G+   +   +++GG+  E Q
Sbjct: 302 WITNLPKIERLDEADQGPYSIILAPTRELAQQIEEETNKFGQPLGIRTVVVVGGLSREEQ 361

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 362 GFRLRMGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 421

Query: 176 -------------------------FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
                                      RQT++F+ATM   +++++  +L+ P  + + + 
Sbjct: 422 VTNLKPDNEDAENEEKLLANYNTKKKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSV 481

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               E  E           +K  +       +  +   IIF NQKK    L   LEK G+
Sbjct: 482 GKPTERTEQIVHIMGEADKRKKLMEILSRGVEPPV---IIFVNQKKGADVLAKGLEKFGY 538

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           + C +HG   Q  R   L++ K G+  ++VA+D+A RG+DI DV  V N+D+    E+Y 
Sbjct: 539 NACTLHGGKGQEQREYALASLKSGSKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYT 598

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A +   K+D      +++ I      L   +S+  P L     AQH
Sbjct: 599 HRIGRTGRAGKAGLAISFCTKDDSHLFYDLKQTI------LASPISTCPPELLNHPDAQH 652

Query: 391 NHARKNNPIPQKSTGF 406
                     ++   F
Sbjct: 653 KPGTVVTKKRREEKIF 668


>gi|115384638|ref|XP_001208866.1| hypothetical protein ATEG_01501 [Aspergillus terreus NIH2624]
 gi|114196558|gb|EAU38258.1| hypothetical protein ATEG_01501 [Aspergillus terreus NIH2624]
          Length = 496

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 108/379 (28%), Positives = 169/379 (44%), Gaps = 40/379 (10%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  V   G+ +PT IQ +  P+ L   DV GIA+TG+GKT ++ LP + 
Sbjct: 111 TFDEAGFPQYVLGEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 170

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +      A    P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + L
Sbjct: 171 HINAQPLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQIRDL 230

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V I TPGR++D    G+  +  +  LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 231 SRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQ 290

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T ++SAT   E+   S +   N +  ++   +  +  +    VA+      K A+     
Sbjct: 291 TCMWSATWPKEVNIGSMDLSANHRITQIVEVTGKSPIMVATDVASRGIGMMKLAIHPLPS 350

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                             V                                       + 
Sbjct: 351 PLLPFSFLSPSQAPSPIEV--------------------------------------MVE 372

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            ++ L +    + D+ HV N+D PN +E+Y+HRIGRTGRAG  G A T    ++ K    
Sbjct: 373 KSNSLCSVSTYVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQARD 432

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +  ++ +    ++  L+ +
Sbjct: 433 LVTILTEAKQQIDPRLAEM 451


>gi|194758757|ref|XP_001961625.1| GF15062 [Drosophila ananassae]
 gi|190615322|gb|EDV30846.1| GF15062 [Drosophila ananassae]
          Length = 819

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 117/389 (30%), Positives = 193/389 (49%), Gaps = 28/389 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +++ G   +++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L+
Sbjct: 392 SWSESGFPREIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLS 451

Query: 62  ILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            ++            + P  +I+ PTRELA Q+ +   K+G+   +   +++GG+  E Q
Sbjct: 452 WIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQ 511

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 512 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 571

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            +           +     +    +  ++  + T +                        
Sbjct: 572 VSNLKPDTEEAEDENKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV 631

Query: 215 -ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            +  E      Y             + S+      IIF NQKK    L   LEK G++ C
Sbjct: 632 GKPTERTEQIVYMMGENDKRKKLMEILSRSIDPPVIIFVNQKKGADVLAKGLEKLGYNSC 691

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            +HG   Q  R   L+  K G   ++VA+D+A RG+DI DV  V N+D+    E+Y HRI
Sbjct: 692 TLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRI 751

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           GRTGRAG++G A + V K+D      +++
Sbjct: 752 GRTGRAGKNGVAISFVTKDDSALFYDLKQ 780


>gi|70726359|ref|YP_253273.1| hypothetical protein SH1358 [Staphylococcus haemolyticus JCSC1435]
 gi|68447083|dbj|BAE04667.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 448

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 133/445 (29%), Positives = 211/445 (47%), Gaps = 14/445 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L  K++ A+ D  + KPT IQ + IP + +  ++ G +QTGTGK+ +F+LP++  
Sbjct: 6   FELFNLDSKLIEAIKDLKFDKPTEIQNRIIPRIKKGVNLIGQSQTGTGKSHAFLLPLIDK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121
           ++        P+++++ PTRELA Q+             + V+L IGG   E   ++   
Sbjct: 66  IDVENKE---PQSIVVAPTRELAQQLYQAANHLATFKQGIKVSLFIGGTDIEKDRQRTSN 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L  +    L++DEAD M+D+G I  +  I S +       
Sbjct: 123 QPQLVIGTPTRINDLAQSGHLHAHLASYLIVDEADLMIDLGLIEDVDLIASRLDENSHIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+   LQ     +L NP+ +EV++ S   + IE   + T         L       
Sbjct: 183 VFSATIPKSLQPFLNKYLSNPEYVEVDSKSQNKKNIEFYLIPTKGTEKVDKTLQL---ID 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+FCN + N   L +SL   G  V  IHG +  R R + +   +    Q ++A
Sbjct: 240 ILNPYLCIVFCNSRDNADELANSLNAAGIKVGMIHGGLTPRERKQQMKRIRNLEFQFVIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVP   + + HR+GRTGR    G A TL + ++   I  IE
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPKDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHLITLIE 359

Query: 362 K--LIEKKVDWLNGDLSSL---NPPLEKIDIAQH--NHARKNNPIPQKSTGFDRRKKNYS 414
                 + VD  N +L+ +   N   +++    H  N  +       K+      KK + 
Sbjct: 360 DKGYHFENVDVKNNELTPIKAHNTRRKRVRKDDHLTNEVKHKVRSKTKNKVKPGYKKKFK 419

Query: 415 SQKSHIPLKESEKISKLQQDIQEND 439
            +   +  +E ++ SK Q   Q  +
Sbjct: 420 QEVERMKRQERKQFSKRQNRQQRKN 444


>gi|194880138|ref|XP_001974373.1| GG21122 [Drosophila erecta]
 gi|190657560|gb|EDV54773.1| GG21122 [Drosophila erecta]
          Length = 816

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 125/433 (28%), Positives = 204/433 (47%), Gaps = 34/433 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +++ G   +++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L+
Sbjct: 389 SWSESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLS 448

Query: 62  ILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            ++            + P  +I+ PTRELA Q+ +   K+G+   +   +++GG+  E Q
Sbjct: 449 WIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQ 508

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 509 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 568

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            T           +     +    +  ++  + T +                        
Sbjct: 569 VTNLKPDTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSV 628

Query: 215 -ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            +  E      Y             + S+      IIF NQKK    L   LEK G++ C
Sbjct: 629 GKPTERTEQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSC 688

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            +HG   Q  R   L+  K G   ++VA+D+A RG+DI DV  V N+D+    E+Y HRI
Sbjct: 689 TLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRI 748

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           GRTGRAG+ G A + V K+D      +++ +          +S+  P L     AQH   
Sbjct: 749 GRTGRAGKTGCAISFVTKDDSALFYDLKQCVSA------SPVSTCPPELMNHPEAQHKPG 802

Query: 394 RKNNPIPQKSTGF 406
                  ++   F
Sbjct: 803 TVVTKKRREEKIF 815


>gi|7446043|pir||T15942 hypothetical protein F01F1.7 - Caenorhabditis elegans
          Length = 701

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 132/390 (33%), Positives = 195/390 (50%), Gaps = 28/390 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + G   +V  AV + GY++PTPIQ + IP+ LQ  DV G+A+TG+GKTA+F+LP+L 
Sbjct: 302 NWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLV 361

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +E+   R   P  +I+ PTRELA Q+ +   K+GK   +    +IGG   E Q
Sbjct: 362 WITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQ 421

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             KL  G +V+I TPGR+LD      LL+N    +++DEADRMLDMGF P +Q +   +P
Sbjct: 422 GMKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMP 481

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            T           +E      +  +  ++  + T + ++                     
Sbjct: 482 DTNMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSA 541

Query: 215 -ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            +  E      Y     +       +         IIF NQKK    L   L K GF   
Sbjct: 542 GKPTERVEQVVYMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPT 601

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            +HG   Q  R   L   KEGT  ++VA+D+A RG+D+ DV  V N+D+    E+Y HRI
Sbjct: 602 VLHGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRI 661

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           GRTGRAG+HGKA T +  +D      ++++
Sbjct: 662 GRTGRAGKHGKAITFLTPDDTAVYFDLKQV 691


>gi|331698451|ref|YP_004334690.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953140|gb|AEA26837.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 504

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 140/420 (33%), Positives = 216/420 (51%), Gaps = 10/420 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGL   V+  +   G+  P PIQ  T+P+ L   D+ G  QTG+GKT +F L +L+
Sbjct: 63  TFAELGLPEAVLRTLDAEGFTAPFPIQAATLPVTLAGRDLLGRGQTGSGKTLAFGLALLS 122

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L  GRA  R PR L+L PTRELA QV D  + + +   L  A ++GG+ F  Q   L R
Sbjct: 123 RLAGGRAVARRPRGLVLVPTRELAQQVVDALDPFARALGLRAAAVVGGLSFNRQADALAR 182

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+L+ TPGR+ DH N+    ++ IE+  IDEADRM DMGF+P ++ I  L P   Q L
Sbjct: 183 GVDLLVATPGRLTDHTNQRTADLSGIEVTAIDEADRMADMGFLPQVRAILDLTPADGQRL 242

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++  +   +L +P    V + +   +T++H  +   +    +          
Sbjct: 243 LFSATLDGDVAALVSRYLHDPVTRAVASATGAVDTMDHHLLLVDSVTKARVVAEIA---- 298

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K  V     +L + G S   +HG   Q  R + +++FKEG   ++VA
Sbjct: 299 -ARDGRTILFARTKHGVDRWVRNLRRDGVSAAGLHGGKSQNQRNRAIADFKEGRTPVLVA 357

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ + DV  V + D P   ++Y+HR GRT R G  G   TLV  E+ + +D + 
Sbjct: 358 TDVAARGIHVDDVSLVVHIDPPGDPKDYLHRAGRTARGGESGTVVTLVTPEERRDVDTLT 417

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR---KNNPIPQKSTGFDRRKKNYSSQKS 418
           +    +      D +  +  L+++  A+        +  P PQ+  G  RR +      +
Sbjct: 418 RQAGVRPTV--HDAAPGSATLQRVTGAREPSGIAVVEPRPAPQQPRGQGRRSRPRQGAGA 475


>gi|116194814|ref|XP_001223219.1| hypothetical protein CHGG_04005 [Chaetomium globosum CBS 148.51]
 gi|118575176|sp|Q2H2J1|DBP4_CHAGB RecName: Full=ATP-dependent RNA helicase DBP4
 gi|88179918|gb|EAQ87386.1| hypothetical protein CHGG_04005 [Chaetomium globosum CBS 148.51]
          Length = 825

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 123/467 (26%), Positives = 213/467 (45%), Gaps = 20/467 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F DL L       +  + +   T +Q   IPL L+  D+ G A+TG+GKT +F++P + 
Sbjct: 54  QFTDLPLCEATASGLRASHFEVLTDVQRAAIPLALKGRDILGAAKTGSGKTLAFLVPVLE 113

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +             LI+ PTRELA Q+ +   K G+N+  +  L+IGG   + + ++L 
Sbjct: 114 KLYHAKWTEYDGLGALIISPTRELAVQIFEVLRKIGRNHFFSAGLVIGGKSLKEEAERLG 173

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +          +NN++ILV+DEADR++DMGF   +  +   +P TRQT
Sbjct: 174 RMNILVCTPGRMLQHLDQTANFDVNNLQILVLDEADRIMDMGFQSAVDALVEHLPTTRQT 233

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT +  +  ++   L+ P+ +  +  + +A              ++K         
Sbjct: 234 LLFSATQSKRVSDLARLSLKEPEYVSAHEAAVSATPTNLQQSYIVTPLAEKL-DTLFGFL 292

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQL 298
             +     I+F +  K V  +  S ++    +    +HG   Q +RM+I S F       
Sbjct: 293 RTNLKSKIIVFFSSGKQVRFVFESFKRMQPGIPLLHLHGRQKQVARMEITSRFSSAKYGC 352

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+ ARG+D P V  V   D P  A+ YIHR+GRT R    G+A   +   +     
Sbjct: 353 LFATDVVARGVDFPAVDWVVQADCPEDADTYIHRVGRTARYESKGRAVLFLEPSE--EAG 410

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +++L +KKV            PL+K+++ ++      N +  +S  F      Y  QK+
Sbjct: 411 FLKRLEQKKV------------PLQKVNVRENKKKSIKNEL--QSYNFQSPDLKYLGQKA 456

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDKL 465
            I    S  + K ++    N  D  G+  ++     P+ + +  D +
Sbjct: 457 FISYTRSIYLQKDKEVFNFNKLDLDGYAASLGLAGTPQIKYQKGDDI 503


>gi|195155931|ref|XP_002018854.1| GL26027 [Drosophila persimilis]
 gi|194115007|gb|EDW37050.1| GL26027 [Drosophila persimilis]
          Length = 578

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 123/383 (32%), Positives = 200/383 (52%), Gaps = 9/383 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L   +   V  +GY   TPIQ   IP++    D+   AQTG+GKTA+F+LP+L 
Sbjct: 163 KFEDAKLRDIIAANVTKSGYKLATPIQKVAIPVIAAGRDLMACAQTGSGKTAAFLLPILN 222

Query: 62  ILEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +L        +  P+ +I+ PTRELA Q+     K+     L +++L GG   + QN+ +
Sbjct: 223 LLLNDAVDLEIGKPQAVIVSPTRELAIQIYHEARKFSHESYLKISILYGGTSVKYQNESI 282

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  +LI TPGR+LD   R  +  ++   LV+DEADRMLDMGF   ++ I +      Q
Sbjct: 283 MMGCHLLIATPGRLLDFVERAFITFDDTRFLVMDEADRMLDMGFSESMRKIVTHCTMRAQ 342

Query: 180 TL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
               +FSAT   E+Q+++  FL N   + +         ++     T  + +K     + 
Sbjct: 343 HQTLMFSATFPQEIQRMAGEFLNNYIFVTIGVVGGACSDVKQ----TIHEVTKYNKRRKL 398

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +   +++    I+F   K+    L   L +      +IHG+  Q  R + L +FK G ++
Sbjct: 399 IDILKESADGTIVFVETKRGADFLASYLSEAEHPTTSIHGDRLQSQREQALRDFKTGKMK 458

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKH 356
           +++A+ +A+RGLDI +V HV N+D+P   ++Y+HRIGRTGR G +G+A +    + D   
Sbjct: 459 VLIATSVASRGLDIKNVKHVVNYDMPKTIDDYVHRIGRTGRVGNNGRATSFFDPDQDSAL 518

Query: 357 IDAIEKLIEKKVDWLNGDLSSLN 379
              + K++E     + G L  L+
Sbjct: 519 ASDLVKILEGSDQVVPGFLRVLS 541


>gi|195169451|ref|XP_002025535.1| GL15249 [Drosophila persimilis]
 gi|194109014|gb|EDW31057.1| GL15249 [Drosophila persimilis]
          Length = 688

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 120/360 (33%), Positives = 191/360 (53%), Gaps = 10/360 (2%)

Query: 17  LDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--EKGRARVRMPR 74
              G+ KPT IQ +  P+ L   D+ GIAQTG+GKT +++LP +  +  +    R   P 
Sbjct: 2   KRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIGKQPPILRGEGPI 61

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNKKLERGADVLICTPGR 132
            L+L PTRELA Q+      YG           + GG     Q + LERG +V+I TPGR
Sbjct: 62  ALVLAPTRELAQQIQSVVRDYGHLCQPEIRHTCIFGGSSKVPQARDLERGVEVIIATPGR 121

Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192
           ++D        +     LV+DEADRMLDMGF P I+ I   +   RQ +++SAT   E+Q
Sbjct: 122 LIDFLENRNTNLARCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVMWSATWPKEVQ 181

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ------LLQSQDTMK 246
            ++ +FL +  +I + + + +A       V    +  K   +++          S +   
Sbjct: 182 ALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEMEKPQRMVRLLKEIAPTNNSANNGS 241

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             IIF   K  V ++   +  +G+   +IHG+  Q  R  +L +F+ G   +++A+D+A+
Sbjct: 242 KIIIFVETKIKVEDILQIIRTEGYIATSIHGDKTQNERDSVLKDFRNGKSNILIATDVAS 301

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLD+ D+ +V N+D PN +ENY+HRIGRTGR  + G A+T    ++ K    +  ++E+
Sbjct: 302 RGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQARELISVLEE 361


>gi|194760837|ref|XP_001962639.1| GF14338 [Drosophila ananassae]
 gi|190616336|gb|EDV31860.1| GF14338 [Drosophila ananassae]
          Length = 1472

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 127/382 (33%), Positives = 205/382 (53%), Gaps = 9/382 (2%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
             F D GL   V   V+ +GY  PTPIQ  +IP++ +  D+   AQTG+GKTA+F+LP+L+
Sbjct: 1058 KFEDAGLRTIVTENVIKSGYKVPTPIQKVSIPVINEGRDMMACAQTGSGKTAAFLLPILS 1117

Query: 62   I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                +     +  P+ +++ PTRELA Q+ +   K+G    L ++++ GG  F+ QN+ +
Sbjct: 1118 KLLEDPQDLEIGKPQAVVVSPTRELAIQIFNEARKFGFESYLKISIVYGGTSFKHQNECI 1177

Query: 120  ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             +G  VLI TPGR+LD  +R  +  N+   +V+DEADRMLDMGF   ++ I +      +
Sbjct: 1178 TKGCHVLIATPGRLLDFVDRTFITFNDTRFVVLDEADRMLDMGFSESMRKIMTHRTMRSE 1237

Query: 180  TL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
                +FSAT  +E+Q+++  FL N   + +                T  + +K     + 
Sbjct: 1238 HQTLMFSATFPEEIQRLAGEFLNNYVFVTIGVVGGACSD----VQQTIYEVNKFNKRSKL 1293

Query: 238  LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +   ++     I+F   K+    L   L +  F   +IHG+  Q  R + L +FK G ++
Sbjct: 1294 MEILREDANGTIVFVETKRGADFLASFLSETEFPTTSIHGDRLQSQREQALRDFKTGKMK 1353

Query: 298  LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKH 356
            +++A+ +AARGLDI +V HV NFD+PN   +Y+HRIGRTGR G +G+A +     +D   
Sbjct: 1354 VLIATSVAARGLDIKNVKHVVNFDMPNNIADYVHRIGRTGRVGNNGRATSFFDVDQDRSL 1413

Query: 357  IDAIEKLIEKKVDWLNGDLSSL 378
               +   +E     +   L  L
Sbjct: 1414 AGDLINTLEGSGQEVPDFLRML 1435


>gi|58426933|gb|AAW75970.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 482

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 127/381 (33%), Positives = 191/381 (50%), Gaps = 6/381 (1%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F+ L LSP +   +   GY   TP+Q +++P +L+  DV   A TG+GKTA+F L +
Sbjct: 25  MNEFSALPLSPALAPGIDALGYTVLTPVQAQSLPPILRGLDVIAQAPTGSGKTAAFGLGL 84

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  L+    R +                        G      V L  G           
Sbjct: 85  LQKLDPALTRAQALVLC-PTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 143

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I S     RQ
Sbjct: 144 AHDPHVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 203

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT  D ++ ++   L++P  I V    +  E  +  F        K  A L    
Sbjct: 204 SLLFSATFPDIIRTLAREILKDPIEITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLL-- 261

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             + T ++ ++FCN +K V  +  SL++ GFS  A+HG+++QR R ++L  F   +  ++
Sbjct: 262 --RFTPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 319

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+HG A +LVA  +     A
Sbjct: 320 VASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARAQA 379

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           +E    + + W    L++  P
Sbjct: 380 LEAEQGQPLKWSRAPLATARP 400


>gi|84624218|ref|YP_451590.1| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|161898981|ref|YP_201355.2| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188576177|ref|YP_001913106.1| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|84368158|dbj|BAE69316.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188520629|gb|ACD58574.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 458

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 127/381 (33%), Positives = 191/381 (50%), Gaps = 6/381 (1%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F+ L LSP +   +   GY   TP+Q +++P +L+  DV   A TG+GKTA+F L +
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPVQAQSLPPILRGLDVIAQAPTGSGKTAAFGLGL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  L+    R +                        G      V L  G           
Sbjct: 61  LQKLDPALTRAQALVLC-PTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I S     RQ
Sbjct: 120 AHDPHVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT  D ++ ++   L++P  I V    +  E  +  F        K  A L    
Sbjct: 180 SLLFSATFPDIIRTLAREILKDPIEITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLL-- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             + T ++ ++FCN +K V  +  SL++ GFS  A+HG+++QR R ++L  F   +  ++
Sbjct: 238 --RFTPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+HG A +LVA  +     A
Sbjct: 296 VASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARAQA 355

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           +E    + + W    L++  P
Sbjct: 356 LEAEQGQPLKWSRAPLATARP 376


>gi|313674605|ref|YP_004052601.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312941303|gb|ADR20493.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 371

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 108/374 (28%), Positives = 191/374 (51%), Gaps = 7/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPM 59
           M F +LG+S K++  + +     PT IQ   I  ++Q   D+   AQTGTGKTA+F LP+
Sbjct: 1   MTFKELGISDKLIKGLSELNIQNPTKIQELVIGHLMQNTGDLVAQAQTGTGKTAAFGLPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKK 118
           L  +     +++     IL PTRELA Q+     K+ K  +     ++ G    E Q + 
Sbjct: 61  LERINPKDDKIQAV---ILSPTRELAQQIKHQLFKFTKYSDKVFMEVVFGGEKIEKQIQN 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+R   +L+ TPGR+ D   R  + + + +++V+DEAD ML MGF   ++ I + +   +
Sbjct: 118 LKRPTQILVATPGRLNDLIRRKAVDIRDAKLMVLDEADEMLSMGFKKDLEFILNTMKHKK 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
              LFSAT+  +++ + + +L+   +    + +                  K   ++   
Sbjct: 178 DIWLFSATIPTDIKYIIKQYLEPNAKQIKASGNELVNEKIMHQYVPCDTDEKM--MVLDY 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  + GIIFCN K +   L   L  +  S   + G++ Q+ R K +  FK   + L
Sbjct: 236 FLKTQKKERGIIFCNTKNSARALHEQLNARKISTGILEGDMHQKDRDKEMRAFKNKKLDL 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+ ++  V ++++P + + Y+HR GRT RAG+ G +  L  K ++  I 
Sbjct: 296 LIATDVAARGIDVANLAFVVHYEIPKQVDYYVHRSGRTARAGKTGISMALCTKNEVTQIK 355

Query: 359 AIEKLIEKKVDWLN 372
            I++ +  K+  + 
Sbjct: 356 KIQQELGIKIKPVP 369


>gi|303390819|ref|XP_003073640.1| eukaryotic translation initiation factor 4A [Encephalitozoon
           intestinalis ATCC 50506]
 gi|303302787|gb|ADM12280.1| eukaryotic translation initiation factor 4A [Encephalitozoon
           intestinalis ATCC 50506]
          Length = 425

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 113/388 (29%), Positives = 183/388 (47%), Gaps = 16/388 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D GL   ++  +   G+  P+ IQ   I  ++   D+   AQ+GTGKT +F +  L 
Sbjct: 39  TWEDYGLKEDLLKGIYGIGFETPSFIQKAAIQPIIDGRDIRAQAQSGTGKTGAFAVAALQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I +  +    + + L+L  TRE+AAQ A  FE  G      VALL GG P  A    LE+
Sbjct: 99  ICDMSQ---DVTQILVLASTREIAAQNAARFEDLGCFMGARVALLSGGSPISADKIALEK 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+    N  +L M+NI++ VIDEAD ML  GF   +++I   +    +  
Sbjct: 156 RPHIVVGTPGRVEHMININELNMDNIKLFVIDEADEMLKAGFQEQVKSIFRRITNKDEVQ 215

Query: 182 LFSATMTDE-----------LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
           +   + T +           +  V  +   N + ++           E  F      Y  
Sbjct: 216 IAMFSATYDEEELRVSEEILINPVIIDLRYNDQTLKGIRQYFIDLKKEPPFRKGREDYLL 275

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
              +    +  +  +   I+F N K++   +   L K  +    I   + Q  R + L+ 
Sbjct: 276 PKLVTLYDIFRKQRLGQSIVFINSKEDARIVYDWLIKHEWECELISAELTQAERERTLNR 335

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP--NRAENYIHRIGRTGRAGRHGKAFTL 348
           F+ GT + +++S L +RG+DI ++  VF  DVP   R   YIHRIGR+GR GR G A  +
Sbjct: 336 FRGGTGRCLISSGLLSRGIDIQNLSVVFCLDVPSFERKSTYIHRIGRSGRYGRKGIAINI 395

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
           V + ++K++ AIE+     +  L  D S
Sbjct: 396 VYEHELKNLKAIERFYNTTIKELPADFS 423


>gi|225677534|gb|EEH15818.1| ATP-dependent RNA helicase drs1 [Paracoccidioides brasiliensis
           Pb03]
          Length = 815

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 139/450 (30%), Positives = 207/450 (46%), Gaps = 30/450 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    LS  ++  +   G+  PTPIQ KTIP+ L   DV G A TG+GKT +F++P+L 
Sbjct: 301 SFQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILE 360

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q  +   K     ++T   L+GG     Q   L++
Sbjct: 361 RLLYRPRKVPTSRVAILMPTRELAVQCCNVATKLATYTDITFCQLVGGFSLREQENILKK 420

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH        ++ +EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 421 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 480

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMT+ + K+    L  P R+ V+    T  T+   FV        K       L 
Sbjct: 481 MLFSATMTNTIDKLIRVGLNRPVRLMVDAQKQTVGTLVQEFVRLRPGREDKRLGYLITLC 540

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   KK    +       G     +HG++ Q      +++    T     
Sbjct: 541 KTVYKDLVIIFFRAKKEAHRVRIIFGLFGLKAAELHGSMSQEQASFAIASGTLTTDL--- 597

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA- 359
                  GLDI  V  V N++ P   E Y+HR+GRT RAGR G+A T+ A+ D K + A 
Sbjct: 598 --GHELIGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAESDRKVVKAA 655

Query: 360 -----------IEKLIE--------KKVDWLN---GDLSSLNPPLEKIDIAQHNHARKNN 397
                      + +LI+         KV+ +     ++       +++  A+    R +N
Sbjct: 656 VKTGRAQGAKIVSRLIDVAEADKWAAKVEEMEDEVKEILKEEKEEKQLAQAEMEVTRGSN 715

Query: 398 PIPQKSTGFDRRKKN-YSSQKSHIPLKESE 426
            I  +     R K+  + S+K  +  K+  
Sbjct: 716 LISHEKEIMSRPKRTWFESEKEKLQAKQRA 745


>gi|302038481|ref|YP_003798803.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
 gi|300606545|emb|CBK42878.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
          Length = 442

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 141/426 (33%), Positives = 226/426 (53%), Gaps = 15/426 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+L L+  +   +  AG+  PTPIQ   IPL L+  D+   A+TG+GKT +F++P++
Sbjct: 2   VSFAELSLTSFLADRLQQAGFTAPTPIQSAAIPLALEGRDLLAQAKTGSGKTLAFLIPLI 61

Query: 61  TILEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               K   +     R PR L+L PTRELA Q+     KY      ++A+  GG+P E   
Sbjct: 62  ERAVKEGWKPAGSARSPRALVLAPTRELALQIEMELRKYAPPSVTSLAVY-GGVPIERHY 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L +   ++I TPGR+LD      L +  IE +V+DEAD+MLD GF+  IQ I  L+P 
Sbjct: 121 RALRQPPMIVIGTPGRLLDVAGTRHLDLRGIEYVVMDEADQMLDRGFLRDIQRILQLLPS 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT + E+  ++E+ L+NP R  V+   +T  TI H +    ++ S+   +  
Sbjct: 181 QRQTMLFSATFSPEILTLAESMLKNPARTAVDPGVNTPTTITHAYYVVPSESSRVQLIHT 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L   +   ++ +    + K V  L   L  +  SV AI GN  Q  R + L+ F+ G +
Sbjct: 241 LLQSPESGDQSMVFCDQKYK-VKRLAARLGGEPASVGAITGNHSQAQRERTLTAFRSGRL 299

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           + +VA+D+AARGLD+P V  V ++++P    +Y+HR GRTGRA R G    +++ ++   
Sbjct: 300 RTLVATDVAARGLDVPSVSQVIHYELPGNPTSYVHRTGRTGRAERSGATLLILSPKEEHE 359

Query: 357 IDAIEKLIEKKVDWLN-GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
             A+ + +  +   L    L+ L PP  + +         N        G D R +    
Sbjct: 360 YLAMVRRLRIQTKRLTLPALAVLPPPAHEPE--------SNGQSRHDGRGRDARPRRAGE 411

Query: 416 QKSHIP 421
           +++ +P
Sbjct: 412 RQNSMP 417


>gi|257068313|ref|YP_003154568.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
 gi|256559131|gb|ACU84978.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
          Length = 582

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 125/370 (33%), Positives = 196/370 (52%), Gaps = 6/370 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD  +   +V A+   G   P PIQ  T+P+ L+  D+ G A+TGTGKT  F +P+L 
Sbjct: 32  TFADFDVRTDIVEALAAKGITTPFPIQSLTLPVALRGRDIIGQAKTGTGKTLGFGIPLLQ 91

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                         +  P+ L++ PTRELA QVA + E       + +  + GG  +E Q
Sbjct: 92  NSVAPGEPNPADRPIGTPQALVVLPTRELAVQVAHDLETASAKRPIRILTVYGGRAYEPQ 151

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + LE+G +V++ TPGR++D   +  L ++ +   V+DEAD MLD+GF+  I+ +   VP
Sbjct: 152 IEALEKGVEVVVGTPGRLIDLMRQKYLDLSQVRTAVLDEADEMLDLGFLEDIEKLLQAVP 211

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT+LFSATM   +  ++  F++ P  I  + P   + T        Y  +      +
Sbjct: 212 VKRQTMLFSATMPGPIMALARRFMKQPTHIRAHDPGDESRTKADIKQVVYRAHQLDKIEV 271

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              +         IIF   K+    +   L  +GF+   +HG++ Q +R + L  F+ G 
Sbjct: 272 MARILQARGRGLSIIFMRTKRQADRVAGDLADRGFAAAPLHGDLGQGAREQALRAFRSGK 331

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++VA+D+AARG+D+ DV HV N++ P+  + Y+HR GRTGRAG+ G A T V  ED+ 
Sbjct: 332 IDVLVATDVAARGIDVTDVTHVVNWNCPDDDKTYLHRTGRTGRAGKKGTAITFVDWEDLA 391

Query: 356 HIDAIEKLIE 365
               I + + 
Sbjct: 392 RWALIARQLG 401


>gi|123413907|ref|XP_001304373.1| eukaryotic translation initiation factor [Trichomonas vaginalis G3]
 gi|121885820|gb|EAX91443.1| eukaryotic translation initiation factor, putative [Trichomonas
           vaginalis G3]
          Length = 410

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 114/379 (30%), Positives = 188/379 (49%), Gaps = 6/379 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF  + L   ++  +   G+ +P+ IQ   I  + Q+ +V   AQ+GTGKT +F + +L
Sbjct: 29  LDFDQMDLDENLLRGIYAYGFKQPSDIQALAIKPICQKRNVLAQAQSGTGKTGAFSIGVL 88

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKL 119
             ++      +    L+L PTREL  Q+    ++  +     T+ +  GG+      +K 
Sbjct: 89  NRIDTSLVETQA---LLLAPTRELVDQIYIFIKQISEKMPNITIEVFKGGLSVTEDQRKA 145

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    V ICTPGR LD  ++G L +  +++ V+DEAD ML  GF   +  I   +    Q
Sbjct: 146 QEKPMVAICTPGRALDLISKGYLQIGQLQMFVLDEADEMLSEGFKETVDEICKYLDPEIQ 205

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT+         N   NP +I V     T E I+  +V      +K        +
Sbjct: 206 TCLFSATIPWSTISKIPNLFDNPVKILVKAEKLTLEGIKQFYVNVGETSNKLSV--LLDI 263

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   +IF N K  V  L   LE   F+V AIH N+ Q  R  I+ NF+    +++
Sbjct: 264 YGALNITKAVIFANSKATVDFLKSELEANKFTVSAIHSNLTQVERDTIMKNFRINVSRVL 323

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +++DL ARG+D+  +  V NF++P   E Y+HRIGR+GR GR G A  +  + +++ +  
Sbjct: 324 ISTDLLARGIDVQQITLVINFELPTTREKYLHRIGRSGRYGRKGVAINICDEGEMRKLRD 383

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +E     ++  L  D++ +
Sbjct: 384 LEHFYSTQIAELPADINDV 402


>gi|288818118|ref|YP_003432466.1| ATP-dependent RNA helicase [Hydrogenobacter thermophilus TK-6]
 gi|288787518|dbj|BAI69265.1| ATP-dependent RNA helicase [Hydrogenobacter thermophilus TK-6]
 gi|308751719|gb|ADO45202.1| DEAD/DEAH box helicase domain protein [Hydrogenobacter thermophilus
           TK-6]
          Length = 365

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 137/367 (37%), Positives = 209/367 (56%), Gaps = 7/367 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F    LS  +  A+ D GY +PTPIQ + IPL L+ +D+ G A TGTGKTA+F +P++
Sbjct: 1   MEFNFQQLSEILQKAIRDLGYEEPTPIQKEAIPLALKGYDIMGQAATGTGKTAAFGIPIV 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK-KL 119
                  ++    + L+L PTRELA QV +      K   L V +  GG P     +   
Sbjct: 61  EK----ISKDDGLKALVLTPTRELALQVKEQLYALSKYKALKVFVFYGGTPVRRDLELLS 116

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +   +++I TPGRI D  +RG L +  +  LV+DEAD MLDMGF+  I++I +  P  RQ
Sbjct: 117 KVVPNIVIGTPGRIKDLLSRGVLNLGGVSFLVLDEADLMLDMGFVEDIESIIAYTPKDRQ 176

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT+  E++ ++   L++  +       S     +          SK+     + +
Sbjct: 177 TFLFSATIPKEIELLARKHLKDDYKFV--RVISAELKPKIEERLIRLNSSKQKISELERI 234

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +  ++  IIF   KK+  ++   L+ +GFSV ++HG++ QR R   L  F+EG ++ +
Sbjct: 235 LREHLLEKVIIFVRTKKDARDISQELKNRGFSVVSLHGDMTQRQRENALKLFREGKVKTV 294

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI  V  V N+ +P   E YIHRIGRTGR G +GKA++L+  ED K +  
Sbjct: 295 VATDVASRGLDIKGVSLVINYQIPEDPEVYIHRIGRTGRVGSYGKAYSLITPEDSKALWR 354

Query: 360 IEKLIEK 366
           I+K+ E+
Sbjct: 355 IKKVKER 361


>gi|83645104|ref|YP_433539.1| ATP-dependent RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83633147|gb|ABC29114.1| ATP-dependent RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 393

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 213/378 (56%), Gaps = 9/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L PK+  A+ D  + + TPIQ +T+P  LQ  D+ G AQTGTGKTA+F++ +L  
Sbjct: 14  FSSLNLHPKLEQAIRDLNFERCTPIQGQTLPHTLQGADLIGQAQTGTGKTAAFLITILQR 73

Query: 63  LEKGR-----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           L              PR L++ PTRELA Q+  +     K+  L +  +IGG   + Q +
Sbjct: 74  LVSNPILTEERFSSEPRALVVAPTRELALQIEKDACALAKHLKLNIISVIGGTQLDRQRR 133

Query: 118 K-LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K  +   D+LI TPGR+LDH     + ++ +E+LV+DEADRMLDMGFIP ++ I    P 
Sbjct: 134 KLRDEAVDLLIATPGRLLDHLTSADIYLDQVEVLVLDEADRMLDMGFIPDVKRIVRATPR 193

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT +++++ ++  + + P  + +      A+T++       +   +K  +  
Sbjct: 194 ERQTLLFSATFSEDIKNLARRWTEEPVEVMLAVDHLPAKTVDQRVYMVESSAKRKLLVNL 253

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                    +  I+FCN++    +L  +L +       I G + Q+ R+K L  F+ G  
Sbjct: 254 L---KDSETRRVIVFCNRRDETRSLSEALNRHSIKNELISGELPQQKRLKTLERFRRGDF 310

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++VA+D+A RGL I  V HV N+++P+  E+Y+HRIGRTGRAG  G + +   ++D   
Sbjct: 311 RVLVATDVAGRGLHIDGVTHVVNYNLPDDPEDYVHRIGRTGRAGATGVSISFACEDDSFL 370

Query: 357 IDAIEKLIEKKVDWLNGD 374
           I  +EK +  ++  ++ D
Sbjct: 371 IPELEKYLGHELALIHPD 388


>gi|66825125|ref|XP_645917.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           discoideum AX4]
 gi|1688326|gb|AAB36962.1| IfdA [Dictyostelium discoideum]
 gi|60473986|gb|EAL71923.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           discoideum AX4]
          Length = 395

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 193/377 (51%), Gaps = 7/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L   ++  +   G+ KP+ IQ + I  + +  D+   AQ+GTGKTA+F + +L+
Sbjct: 25  SFDNMELPKDLLRGIYSYGFEKPSAIQQRAIIPLSKGFDIIAQAQSGTGKTATFTVGILS 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +    + LI+ PTRELA Q+       G+  ++     IGG       + L+ 
Sbjct: 85  RIDISVLK---CQALIIAPTRELAQQIQKVVLALGEYLHIKSYACIGGTKITDDIQALQS 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ +  +RG +  + I I  +DEAD ML  GF   I  I   +P T Q  
Sbjct: 142 GVHVVVGTPGRVFEMLSRGIINRDTIRIFCLDEADEMLSRGFKDQIYEIFRFLPKTIQVG 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMTDE   ++  F+QNP  I V     T E I   +V    +  K        L  
Sbjct: 202 LFSATMTDETLGITSKFMQNPVSILVKKDELTLEGIRQFYVNVGVEQGKFEV--LTDLYE 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   + +Q F+V + HG+   + R  IL  F+ G  ++++ 
Sbjct: 260 TLSITQSVIFCNTRRKVDWLTSKMTEQKFTVSSTHGDQ--KDRDGILQAFRSGATRVLIT 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P   ENYIHRIGR+GR GR G A   +   +   ID + 
Sbjct: 318 TDLLARGIDVQQVSLVINFDLPTNIENYIHRIGRSGRFGRKGVAINFITDAERGQIDELS 377

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     +  +  D+ S 
Sbjct: 378 RHYNTYIAEMPQDIGSF 394


>gi|326913476|ref|XP_003203064.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like [Meleagris
           gallopavo]
          Length = 695

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 140/435 (32%), Positives = 218/435 (50%), Gaps = 30/435 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 217 SFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 276

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 277 QIYADGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVV 336

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 337 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 396

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 397 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 456

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK    L   L  +G++  +IHG+  QR
Sbjct: 457 WVEELDKRSFLLDLLNATGKDSL--TLVFVETKKGADALEDFLYHEGYACTSIHGDRSQR 514

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 515 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 574

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH--ARKNNPIP 400
           G A +   + +I     +       +D L      +   LE +   QH+     +     
Sbjct: 575 GLATSFFNERNINITKDL-------LDLLVEAKQEVPSWLENMAYEQHHKGGGSRGRSKS 627

Query: 401 QKSTGFDRRKKNYSS 415
           + S GF  R    SS
Sbjct: 628 RFSGGFGARDYRTSS 642


>gi|308080082|ref|NP_001183327.1| hypothetical protein LOC100501728 [Zea mays]
 gi|238010798|gb|ACR36434.1| unknown [Zea mays]
          Length = 649

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 112/394 (28%), Positives = 198/394 (50%), Gaps = 11/394 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L LS     A+ +  Y   T IQ ++IP +L+ +DV G A+TG+GKT +F++P + +
Sbjct: 154 FSELPLSELTAKAIREMNYTHLTQIQARSIPHLLEGNDVMGAAKTGSGKTLAFLIPAIEM 213

Query: 63  LEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L       R     I + PTRELA Q  +  ++  K ++ T+  +IGG    ++  +L +
Sbjct: 214 LYHTHFSPRNGTGAIVVCPTRELAIQTHNVAKELMKYHSQTLGYVIGGNNRRSEADQLAK 273

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           G ++L+ TPGR +    N    +   ++ LVIDEADR+L+  F   ++ I   +P  RQT
Sbjct: 274 GINLLVATPGRLLDHLQNTKSFIYRRLKCLVIDEADRILEQNFEEDMKQIFKRLPQNRQT 333

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC------FVATYAQYSKKCAL 234
           +LFSAT T E++K ++   +  +  +        +  +                S K  L
Sbjct: 334 VLFSATQTPEVEKFAKLSFEKNEESKKKPVYVGVDDDKSKATVEGLQQGYCVISSDKRFL 393

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +      +   K  ++F +   +V      L   G     IHG   Q+ R     +F + 
Sbjct: 394 VLYAFLRKKRNKKIMVFFSSCNSVKFHAELLNFLGIECSDIHGKQKQQKRTTTFFSFCKA 453

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKED 353
              +++ +++AARGLDIPDV ++  +D P+  ++YIHR+GRT R  +  G A   +  E+
Sbjct: 454 EKGILLCTNVAARGLDIPDVDYILQYDPPDEPKDYIHRVGRTARGEKGKGSALLFLLPEE 513

Query: 354 IKHIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
           +K +  ++  K+   + ++   ++ +L   LE I
Sbjct: 514 LKFLIYLKAAKVTLTEYEFNQKNVPNLQSQLENI 547


>gi|24581952|ref|NP_723089.1| helicase at 25E, isoform A [Drosophila melanogaster]
 gi|24581954|ref|NP_723090.1| helicase at 25E, isoform B [Drosophila melanogaster]
 gi|24581956|ref|NP_723091.1| helicase at 25E, isoform C [Drosophila melanogaster]
 gi|195342749|ref|XP_002037961.1| GM18014 [Drosophila sechellia]
 gi|195550904|ref|XP_002076131.1| GD11981 [Drosophila simulans]
 gi|2500532|sp|Q27268|UAP56_DROME RecName: Full=ATP-dependent RNA helicase WM6; Short=DEAD box
           protein UAP56; Short=Dmrnahel; AltName: Full=HEL/UAP56
 gi|158313|gb|AAB65835.1| DECD family putative RNA helicase [Drosophila melanogaster]
 gi|505583|emb|CAA56197.1| WM6 [Drosophila melanogaster]
 gi|7296990|gb|AAF52261.1| helicase at 25E, isoform A [Drosophila melanogaster]
 gi|21430206|gb|AAM50781.1| LD23644p [Drosophila melanogaster]
 gi|22945674|gb|AAN10544.1| helicase at 25E, isoform B [Drosophila melanogaster]
 gi|22945675|gb|AAN10545.1| helicase at 25E, isoform C [Drosophila melanogaster]
 gi|194132811|gb|EDW54379.1| GM18014 [Drosophila sechellia]
 gi|194201780|gb|EDX15356.1| GD11981 [Drosophila simulans]
 gi|220946752|gb|ACL85919.1| Hel25E-PA [synthetic construct]
 gi|220956384|gb|ACL90735.1| Hel25E-PA [synthetic construct]
          Length = 424

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 99/394 (25%), Positives = 170/394 (43%), Gaps = 14/394 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 43  FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE           +                               G    + +       
Sbjct: 103 LEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGT 162

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM-GFIPYIQNITSLVPFTRQTL 181
             +++ TPGRIL      KL +  ++  V+DE D+ML+       +Q I    P  +Q +
Sbjct: 163 PHIVVGTPGRILALIRNKKLNLKLLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHGKQVM 222

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT++ +++ V + F+Q+P  + V+  +               +  K   L +     
Sbjct: 223 MFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFEL--LD 280

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  +IF    +  V L   L +Q F    IH  + Q  R+     FK+   +++VA
Sbjct: 281 VLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVA 340

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAI 360
           ++L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ +
Sbjct: 341 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEV 400

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           +   +  +  L           E+ID++ +   R
Sbjct: 401 QDRFDVNISELP----------EEIDLSTYIEGR 424


>gi|328873249|gb|EGG21616.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           fasciculatum]
          Length = 397

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 193/377 (51%), Gaps = 7/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L   ++  V   G+ KP+ IQ + I  + + +D+   AQ+GTGKTA+F + +L+
Sbjct: 27  SFDGMDLPKDLLRGVYSYGFEKPSAIQQRAITPLAKGYDIIAQAQSGTGKTATFTIGILS 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +     +    + LI+ PTRELA Q+       G+   +     IGG       + L+ 
Sbjct: 87  QINTSIFK---CQALIIAPTRELAIQIQKVVVSLGEYLKIKCYACIGGTKVSDDVQSLQS 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ +  +RG +   +I I V+DEAD ML  GF   I  I  L+P   Q  
Sbjct: 144 GVHVVVGTPGRVHEMLSRGVITRESIRIFVLDEADEMLSRGFKDQIYEIFRLLPEKIQVG 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATMT+E   ++  F+  P +I V     T E I   +V   ++  K        L  
Sbjct: 204 LFSATMTEETLGITTKFMNTPVKILVKKDELTLEGIRQFYVNVGSEQGKFDV--LTDLYE 261

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L + L +Q F+V + HG+   + R  ILS+F+ G  ++++ 
Sbjct: 262 TLSITQSVIFCNTRRKVDWLTNKLTEQQFTVSSTHGDQ--KDREGILSSFRSGITRVLIT 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   +   +   I  + 
Sbjct: 320 TDLLARGIDVQQVSLVINYDIPGNLENYIHRIGRSGRFGRKGVAINFITNNEQDKIQELS 379

Query: 362 KLIEKKVDWLNGDLSSL 378
                 +  +  ++S  
Sbjct: 380 THYNTFIQEMPSNISDF 396


>gi|328784461|ref|XP_623668.3| PREDICTED: ATP-dependent RNA helicase p62-like isoform 1 [Apis
           mellifera]
          Length = 527

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 111/413 (26%), Positives = 199/413 (48%), Gaps = 12/413 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +      V+  +   G+ +PT IQ +  P+ +  H++ GIAQTG+GKT  ++LP +  
Sbjct: 117 FEEGNFPDHVMQCIRKQGFSEPTAIQAQGWPIAMSGHNMVGIAQTGSGKTLGYILPAIVH 176

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +   +  +      I               +       +    + GG P  +Q + LE+G
Sbjct: 177 I-SSQQPLNHGDGPIALILAPTRELAQQIQKVTCSFGYVRSTCIFGGAPKGSQARDLEQG 235

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++ I TPGR++D   RG   +     LV+DEADRMLDMGF P I+ I   +   RQ L+
Sbjct: 236 VEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLM 295

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL---QQLL 239
           +SAT   E++ ++E +L +  ++ + + + +A       V    +  K+  L    Q++ 
Sbjct: 296 WSATWPKEVRNLAEEYLVDYTQLNIGSLTLSANHNILQIVDVCEEDEKQTKLQNLLQEIS 355

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIF   KK V ++  ++ + G+    IHG+  Q  R  +LS++ +G +  +
Sbjct: 356 NVSPDGGKTIIFVETKKKVESITKTIRRYGWPAVCIHGDKSQLERDFVLSDWNKGKVHYI 415

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
             + +    LD+ DV +V NFD PN +E+YIHRIGRTGR+   G ++     ++ +   +
Sbjct: 416 YFNKI--VSLDVDDVKYVINFDYPNSSEDYIHRIGRTGRSNNSGTSYAFFTPQNGRQAKS 473

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN-----HARKNNPIPQKSTGFD 407
           +  ++ +    +N  L  L       DI+++      + ++ N  P+    F+
Sbjct: 474 LVNVLREAKQIINPKLMEL-ADRNGNDISRNRWGYGTYRKRENVFPKTHKRFE 525


>gi|257054731|ref|YP_003132563.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
 gi|256584603|gb|ACU95736.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
          Length = 559

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 144/404 (35%), Positives = 217/404 (53%), Gaps = 15/404 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+ P +V A+ ++G  +   IQ  T+PL L+  DV G A+TGTGKT  F +P+L 
Sbjct: 24  TFADLGVHPDIVRALSESGIERTFDIQALTLPLALRGEDVIGQARTGTGKTLGFGVPLLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L         P+ L++ PTREL  QV+ +  + GK   + +  + GG P+E+Q + L  
Sbjct: 84  RLVTPGDGT--PQALVVVPTRELCLQVSQDLAEAGKYLGVRITSIYGGRPYESQIQSLRS 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV+I TPGR+LD   +  L++  I  LV+DEAD MLD+GF+P I+ I  +VP  RQT+
Sbjct: 142 GVDVVIGTPGRLLDLAEQRNLVLGKISTLVLDEADEMLDLGFLPDIERILRMVPEDRQTM 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +  ++  F              T    E      Y  +S     L   +  
Sbjct: 202 LFSATMPGPILTLARTF-LRQPTHIRAEAGETGAIHERTTQFVYRAHSLDKPELIAKVLQ 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     +IF   K+    +   L ++GF+  A+HG++ Q +R + L  F+ G + ++VA
Sbjct: 261 AEGRGLTMIFTRTKRTAQKVADDLVERGFAAAAVHGDLGQGAREQALRAFRSGKVDILVA 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+  V HV N+ +P   + Y+HRIGRTGRAGR G A TLV  +++     I 
Sbjct: 321 TDVAARGIDVEGVTHVINYQMPEDEKTYVHRIGRTGRAGRTGVAITLVDWDEVPRWKLIS 380

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
                  D L  D+     P+E    ++H     +  IP+ +TG
Sbjct: 381 -------DELGLDMPE---PVETYSTSKHLFT--DLGIPEDATG 412


>gi|242093508|ref|XP_002437244.1| hypothetical protein SORBIDRAFT_10g023440 [Sorghum bicolor]
 gi|241915467|gb|EER88611.1| hypothetical protein SORBIDRAFT_10g023440 [Sorghum bicolor]
          Length = 567

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 142/389 (36%), Positives = 208/389 (53%), Gaps = 27/389 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F   GL+  V+  V   GY  PTP+Q   +P+V+   D+   AQTG+GKTA+F LP+   
Sbjct: 58  FEAAGLAEAVLRNVARCGYDNPTPVQRYAMPIVMAGRDLMACAQTGSGKTAAFCLPVVSG 117

Query: 60  --------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105
                                  RV  PR L+L PTRELAAQ+ +   K+     L V +
Sbjct: 118 LVVPPAGGGSGYGYGRRDRGSFDRVAKPRALVLAPTRELAAQINEEARKFSFQTGLRVVV 177

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
             GG P   Q + LERG D+L+ TPGR++D   R ++ +  I+ LV+DEADRMLDMGF P
Sbjct: 178 AYGGTPMYNQLRDLERGVDLLVATPGRLVDMVERSRISLEGIKYLVMDEADRMLDMGFEP 237

Query: 166 YIQNITSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
            I+ I  ++       RQT+LFSAT   E+Q+++ +FL N   + V    S+ + IE   
Sbjct: 238 QIRKIVDMMNMPKKSVRQTMLFSATFPPEIQRLASDFLYNYIFVTVGRVGSSTDLIEQKL 297

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKN------GIIFCNQKKNVVNLCHSLEKQGFSVCAI 275
                   +   +     QS     +       ++F   K+   +L + L+ +GF   AI
Sbjct: 298 EFVNDGEKRGFLIDLLQKQSAGVANSKLQQPLTLVFVETKREADSLRYFLQSKGFPATAI 357

Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           HG+  Q+ R   L +FK GT  +MVA+D+A+RGLD+P+V HV N+D+P   E+Y+HRIGR
Sbjct: 358 HGDRTQQERESALKSFKSGTTPIMVATDVASRGLDVPNVAHVINYDLPKSIEDYVHRIGR 417

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           TGRAG+ G A     + +      + +L+
Sbjct: 418 TGRAGKAGIATAFFTESNHPLAKGLLELM 446


>gi|241956021|ref|XP_002420731.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223644073|emb|CAX41816.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 556

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 113/389 (29%), Positives = 195/389 (50%), Gaps = 7/389 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LS   + A+ + G+ K T +Q KTIP +L   DV G A+TG+GKT +F++P + +
Sbjct: 101 FENADLSEPTMRAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEL 160

Query: 63  LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   + + R     +I+ PTRELA Q+     +  + ++ T  ++IGG     +  KL +
Sbjct: 161 LYSLKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLSK 220

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G ++L+ TPGR+LDH    + + +N++ LVIDEADR+L++GF   ++ I  ++P   +  
Sbjct: 221 GVNLLVATPGRLLDHLKNTQFVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNENRQS 280

Query: 182 L-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + FSAT T +++ ++   L+         P     T +          S K  LL     
Sbjct: 281 MLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSFL 340

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  K  I+F +   +V      L      V  +HG   Q+ R      F      ++V
Sbjct: 341 KRNVKKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGILV 400

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHIDA 359
            +D+AARGLDIP V  +  FD P+   +YIHR+GRT R  +  GK+   +   ++  +  
Sbjct: 401 CTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELGFLRY 460

Query: 360 IEKLIEKKVDWLN---GDLSSLNPPLEKI 385
           + K  +  ++        ++++   L K+
Sbjct: 461 L-KAAKVPLNEYEFPANKIANIQSQLTKL 488


>gi|170057076|ref|XP_001864320.1| ATP-dependent RNA helicase WM6 [Culex quinquefasciatus]
 gi|167876642|gb|EDS40025.1| ATP-dependent RNA helicase WM6 [Culex quinquefasciatus]
          Length = 423

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 164/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 43  FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE   +   +             ++  + F KY  +  + V      I  + +  K    
Sbjct: 103 LEPTESVPYVLVMCHTRELAFQISKEYERFSKYMPSIKVAVFFGGLPIQKDEEVLKSTNP 162

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++      +    N+   L +    ++ +    +  +     +Q I    P  +Q ++
Sbjct: 163 HIIVGTPGRVLALIRNKKLNLKHLKHFILDECDKMLEQLDMRRDVQEIFRNTPHGKQVMM 222

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ +++ V + F+Q+P  + V+  +               +  K   L +      
Sbjct: 223 FSATLSKDIRPVCKKFMQDPMEVYVDDETKLTLHGLQQHYVKLKENEKNKKLFEL--LDV 280

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F    IH  + Q  R+     FK+   +++VA+
Sbjct: 281 LEFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMVQEERLSRYQQFKDFQKRILVAT 340

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 341 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDAKILNEVQ 400

Query: 362 KLIEKKVDWLNGDLS 376
              +  +  L  ++ 
Sbjct: 401 DRFDVNITELPDEID 415


>gi|332376787|gb|AEE63533.1| unknown [Dendroctonus ponderosae]
          Length = 424

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 89/375 (23%), Positives = 167/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 44  FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 103

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE     V +             ++  + F KY  +  + V      I  + +  K    
Sbjct: 104 LEPTENVVYVLVMCHTRELAFQISKEYERFSKYMPSIKVGVFFGGLPIQKDEEMLKNNCP 163

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L +    ++ +    +  +     +Q I    P  +Q ++
Sbjct: 164 HIVVGTPGRILALVKSKKLNLKHLKHFILDECDKMLELLDMRRDVQEIYRNTPHGKQVMM 223

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ +++ + + F+Q+P  + V+  +               +  K   L +      
Sbjct: 224 FSATLSKDIRPICKKFMQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFEL--LDV 281

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  V L   L +Q F    IH  +DQ+ R+     FK+   +++VA+
Sbjct: 282 LEFNQVVIFVKSVQRCVALAQLLTEQNFPAIGIHRGMDQKERLSRYEQFKDFQKRILVAT 341

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V++E D K ++ ++
Sbjct: 342 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSEESDAKILNEVQ 401

Query: 362 KLIEKKVDWLNGDLS 376
              +  +  L  ++ 
Sbjct: 402 DRFDVNITELPDEID 416


>gi|242133498|gb|ACS87799.1| putative ATP-dependent RNA helicase [Crithidia sp. ATCC 30255]
          Length = 885

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 119/372 (31%), Positives = 191/372 (51%), Gaps = 6/372 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL   ++ A+L  G+  PTPIQ K IP +LQ +DV  +A+TG+GKTA+F++PML  
Sbjct: 92  FQTFGLDKPLLDAILKQGFTVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLYH 151

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  +++   R L+L PTREL+ Q+  N     K  +L  A ++GG   + Q + L   
Sbjct: 152 L-KAHSKMVGIRGLVLSPTRELSLQILHNGFALNKFMDLRFAAVVGGDSLDQQFELLASN 210

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+L       L +  +  LV+DEADR+ ++G  P I  I   +P + Q  L
Sbjct: 211 PDLVVATPGRLLHIMEEASLHLTAVRCLVLDEADRLFELGLQPQIGAIMQKIPESCQRAL 270

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   L + +   L NP  I ++     ++ ++               ++       
Sbjct: 271 FSATMPSVLAEFTSAGLHNPVIIRLDAEMKLSDQLKQSAFLVRNDEKIAALIVLLKRVMH 330

Query: 243 -----DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF   K +V  L   L     S   +HG +DQ +R   + +F +    
Sbjct: 331 VGEAAMNNAQALIFVESKFHVEFLQMVLTAYDISASGVHGQMDQEARRLAVRSFAKRETS 390

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MV +D+AARGLD+P + +V NF  P   + ++HR+GR  RAGR G A++++  ED  + 
Sbjct: 391 VMVVTDVAARGLDLPLLDNVVNFSFPFNPKLFVHRVGRVARAGRSGTAYSIMTFEDFPYY 450

Query: 358 DAIEKLIEKKVD 369
             + + I + + 
Sbjct: 451 VDLMQFIGRPLQ 462


>gi|27545287|ref|NP_775375.1| ATP-dependent RNA helicase DDX54 [Danio rerio]
 gi|20977591|gb|AAM28223.1| ATP-dependent RNA helicase [Danio rerio]
          Length = 862

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 122/372 (32%), Positives = 201/372 (54%), Gaps = 2/372 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA+F++P+   
Sbjct: 80  FQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPLFEK 139

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  +A+    R LIL PTRELA Q     ++ GK   L  AL++GG   + Q   L   
Sbjct: 140 LKAPQAQTGA-RALILTPTRELALQTMKFTKELGKFTGLRTALILGGDSMDDQFAALHEN 198

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I   +P  RQTLL
Sbjct: 199 PDIIIGTPGRLMHVIQEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIRRLPDARQTLL 258

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + + +   L  P  I ++  +  +E +      +     K   LL  L    
Sbjct: 259 FSATLPKLIVEFARAGLTEPVLIRLDVDTKLSEQL-KLSFFSLRLDDKPALLLHLLRNVV 317

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  ++F   K +V  L   L  +G     I+  +DQ +R   +  F    + L++ +
Sbjct: 318 KPQEQTVVFVATKHHVEYLKELLSAEGVDCSCIYSALDQTARKISIGRFVHRKVMLLLVT 377

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP + +V N++ P + + ++HR+GR  RAGR G A++LV  +++ ++  +  
Sbjct: 378 DVAARGIDIPLLDNVINYNFPCKPKLFLHRVGRVARAGRGGTAYSLVCPDEVPYLYDLHL 437

Query: 363 LIEKKVDWLNGD 374
            + + +   + +
Sbjct: 438 FLGRPMQLAHPE 449


>gi|91781411|ref|YP_556617.1| ATP-dependent RNA helicase DbpA [Burkholderia xenovorans LB400]
 gi|91685365|gb|ABE28565.1| ATP-dependent RNA helicase DbpA [Burkholderia xenovorans LB400]
          Length = 467

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 142/405 (35%), Positives = 210/405 (51%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P  +  +   GYV+ TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 11  FSQLSLPPATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + ++L PTRELA QV     +  +       L +  G P   Q   LE 
Sbjct: 71  LDV---RNFAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  RG L + ++  LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 128 GAHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVKQCPKERQTL 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K+S+ F     R       +            Y     +      LL +
Sbjct: 188 LFSATYPEGIVKLSQQF----LRNPKEVKLAERHDNTKIRQRFYEVTEDERLHAVGLLLN 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 244 HYRPVSTLAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L +  ++  + ++E
Sbjct: 304 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGSLE 363

Query: 362 KLIEKKVDWLN-GDLSS-----LNPPLEKIDIAQHNHARKNNPIP 400
           +  ++ V+W    +L++     L PP+E + I      RK    P
Sbjct: 364 QAQKRDVEWHKLSELTATSNEPLLPPMETLQIL---GGRKEKIRP 405


>gi|289664841|ref|ZP_06486422.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 493

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 127/422 (30%), Positives = 216/422 (51%), Gaps = 6/422 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F+   L P ++  +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++   
Sbjct: 9   LTFSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVTVV 68

Query: 59  --MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             +L        +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q 
Sbjct: 69  NRLLNRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQR 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIE-ILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L +G DV+I TPGR++D+  + K++  +   I V+DEADRM D+GFI  I+ +   +P
Sbjct: 129 ELLLQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                     + T   + +   +    +  ++   + T  T        Y    ++   L
Sbjct: 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETI-TAARVRQRIYFPSDEEKQTL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L S+      ++F N K  V  +  +LE+ G+ V  + G++ Q+ R  +L+ F++G 
Sbjct: 248 LLGLLSRSEGARTMVFVNTKAFVERVARALERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +  IE  IE+K+         L P      +        ++      T F + ++  ++
Sbjct: 368 SLPDIEAYIEQKIPVEPVTSELLTPLPRAARVPVEGEEVDDDAGDSVGTIFRQAREQRAA 427

Query: 416 QK 417
           ++
Sbjct: 428 EE 429


>gi|268591855|ref|ZP_06126076.1| ATP-independent RNA helicase DbpA [Providencia rettgeri DSM 1131]
 gi|291312828|gb|EFE53281.1| ATP-independent RNA helicase DbpA [Providencia rettgeri DSM 1131]
          Length = 457

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 135/371 (36%), Positives = 217/371 (58%), Gaps = 9/371 (2%)

Query: 2   DFADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            FADL  LS + +  + + GY+  T IQ   +P +L   DV   A+TG+GKTA+F L +L
Sbjct: 3   SFADLNALSAEQLTNLQELGYLNMTQIQAAALPPILAGKDVRAQAKTGSGKTAAFGLGLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++    ++   ++L+L PTRELA QVA+   +  +       L + G +PF  Q   L
Sbjct: 63  QHIDA---KLFKTQSLVLCPTRELADQVANELRRLARAIPNIKILTLCGGVPFSVQRDSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              A +++ TPGR+LDH NR  + ++ ++ LV+DEADRMLDMGF+P I+ I    P  RQ
Sbjct: 120 AHAAHIIVATPGRLLDHLNRETVQLDALQTLVLDEADRMLDMGFMPDIETIIDYAPINRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +E+ ++S+    NP+ IE+N+        +  +     +       L Q L
Sbjct: 180 TLLFSATWPEEIARISQQIQNNPQTIEINSVDELPAVEQQFYEVARHEK----IELLQKL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S++   + ++FCN KK+   +  +L     SV  +HG+++QR R + L  F  G+ +++
Sbjct: 236 LSREQPASCVVFCNTKKDCQAVYDALTASKQSVLVLHGDMEQRERDQTLVRFANGSSRVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI  +  V N+++    E ++HRIGRT RAG  G A +L A E+ +  +A
Sbjct: 296 VATDVASRGLDIKALEMVINYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRANA 355

Query: 360 IEKLIEKKVDW 370
           +E+++  K++W
Sbjct: 356 LEEMLNMKLNW 366


>gi|212275354|ref|NP_001130628.1| hypothetical protein LOC100191727 [Zea mays]
 gi|194689682|gb|ACF78925.1| unknown [Zea mays]
          Length = 614

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 141/401 (35%), Positives = 218/401 (54%), Gaps = 26/401 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F   GL+  V+  V   GY  PTP+Q   +P+V+   D+   AQTG+GKTA+F LP+   
Sbjct: 82  FEAAGLAEAVLRNVARCGYESPTPVQRYAMPIVMAGRDLMACAQTGSGKTAAFCLPVVSG 141

Query: 60  ------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                                    PR L+L PTRELAAQ+ +  +K+     L V +  
Sbjct: 142 LVAPAGGGNGHGPRDRGSFDRVAAKPRALVLAPTRELAAQINEEAKKFSFQTGLRVVVAY 201

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG P  +Q + LE+G D+L+ TPGR++D   R ++ +  I+ LV+DEADRML+MGF P I
Sbjct: 202 GGTPMFSQLRDLEKGVDLLVATPGRLVDLVERSRISLEAIKYLVMDEADRMLNMGFEPQI 261

Query: 168 QNITSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I  ++       RQT+LFSAT   E+Q+++ +FL N   + V    S+ + I+     
Sbjct: 262 RKIVDMMNMPKKSVRQTMLFSATFPPEIQRLATDFLHNYIFVTVGRVGSSTDLIDQKIEF 321

Query: 224 TYAQYSKKCALLQQLLQ----SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                 +   L     Q    S++     ++F   K+   +L + L+  GFS  +IHG+ 
Sbjct: 322 VNGGEKRGFLLDILQKQSVGLSKNKQPLTLVFVETKREADSLQYCLQSNGFSATSIHGDR 381

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q+ R + L +FK G   ++VA+D+A+RGLD+P+V HV N+D+P   ++Y+HRIGRTGRA
Sbjct: 382 TQQERERALKSFKSGATPILVATDVASRGLDVPNVAHVINYDLPKSIDDYVHRIGRTGRA 441

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLI---EKKVDWLNGDLSS 377
           G+ GKA  L  + +      + +L+   ++ V    GD +S
Sbjct: 442 GKAGKATALFTESNHHLAKDLLELMTGAKQDVPEWLGDYAS 482


>gi|77461469|ref|YP_350976.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens Pf0-1]
 gi|77385472|gb|ABA76985.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens Pf0-1]
          Length = 478

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 132/405 (32%), Positives = 210/405 (51%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 25  FNTLPLSAAMLANLDSLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 84

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  +  +    L +  G+ F  Q   LE 
Sbjct: 85  I---NPRYFGCQALVICPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSFGPQIGSLEH 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I++I    P  RQTL
Sbjct: 142 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIIEQTPARRQTL 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++  F     R      +             Y    ++       +  
Sbjct: 202 LFSATYPVGIKQLASKF----MRDPQTVKAEAFHDDTQIEQRFYEISPEERMSAVTKVLH 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FC  K+ V      L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 258 HFRPASTVAFCFTKQQVQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  +     AIE
Sbjct: 318 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSEAHRAQAIE 377

Query: 362 KLIEKKVDWLNGDL------SSLNPPLEKIDIAQHNHARKNNPIP 400
           +L +  ++W   D       + L PP+  + IA     RK+   P
Sbjct: 378 QLQKTPLNWDQVDNLKSQGGAPLQPPMSTLCIA---GGRKDKVRP 419


>gi|37527225|ref|NP_930569.1| ATP-dependent RNA helicase SrmB [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786659|emb|CAE15723.1| ATP-dependent RNA helicase [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 445

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 144/433 (33%), Positives = 224/433 (51%), Gaps = 8/433 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++L L  +++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+++LP M 
Sbjct: 5   NFSELELDERLLDALNDKGYSRPTAIQAAAIPAAMDGRDVLGSAPTGTGKTAAYLLPAMQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD  +++  + +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQAKEFAAHTHLDIATITGGVAYMNHAEIFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFANDIETIAGETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+  E  +     L       ++   S  E  +       A  S     L   L 
Sbjct: 185 MLFSATLEGEAIRDFAERLLEDPVE-IDAEPSRRERKKIQQFYYRADNSAHKTALLCHLL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   IIF  +++ V  L   L + G     + G + Q  R + +    +G++ ++V
Sbjct: 244 KQPDVTKSIIFVRKRERVHELADKLHQAGIKARFLEGEMVQAKRTEAVKLLNDGSVTVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+ HVFNFD+P  A+ Y+HRIGRT RAGR G A TLV   D   +  I
Sbjct: 304 ATDVAARGLDIDDISHVFNFDLPRTADVYLHRIGRTARAGRKGTAITLVEAHDHPLLGKI 363

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
            + + + +       S +   L     A  + AR        +   +++K   S +K+ I
Sbjct: 364 SRYLNEPLT------SRVVDELRPTTKAPSDKARNKPSKKVLAKRKEKKKAEESKKKAKI 417

Query: 421 PLKESEKISKLQQ 433
             ++S+ I K ++
Sbjct: 418 RHRDSKNIGKRRK 430


>gi|89269500|emb|CAJ82782.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Xenopus (Silurana)
           tropicalis]
          Length = 437

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 130/364 (35%), Positives = 198/364 (54%), Gaps = 2/364 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   V+  GY  PTPIQ K IP++L   DV  +A+TG+GKTA F++PM   
Sbjct: 75  FQSMGLSYPVFKGVMKKGYKVPTPIQRKVIPVILDGKDVVAMARTGSGKTACFLIPMFEK 134

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 135 LKAHSAQTG-VRGLILSPTRELALQTLKFTKELGKFTGLKTALILGGDKMEDQFAALHEN 193

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L +  +E +V DEADR+ +MGF   +Q I S +P TRQTLL
Sbjct: 194 PDIIIATPGRLMHVAIEMNLKLRTVEYVVFDEADRLFEMGFAEQLQEIISRLPETRQTLL 253

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +  ++ +            K   LL  L    
Sbjct: 254 FSATLPKMLLEFARAGLTEPVLIRLDVDTKLSDQL-KLSFFNVRVEDKPAVLLHLLRCVV 312

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  +IF   K +   L   L+ QG     I+  +DQ +R   L  F  G ++ ++ +
Sbjct: 313 KPQEQTVIFVATKHHAEYLRELLDMQGIPCSHIYSALDQTARKINLGLFLHGKVRALLVT 372

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP + +V N++ P +A+ ++HR+GR  RAGR G A++L+A ++I ++  +  
Sbjct: 373 DVAARGIDIPMLDNVINYNFPPKAKLFLHRVGRVARAGRSGTAYSLIAPDEIPYVYDLHL 432

Query: 363 LIEK 366
            + +
Sbjct: 433 FLGR 436


>gi|330969256|gb|EGH69322.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 483

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 209/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 96  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 155

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 156 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 215

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG + ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 216 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 275

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT T+++  +++ +  +P  +E+ + +  ++ +E    A       K    
Sbjct: 276 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYN 335

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 336 L---VTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 392

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 393 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 452

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 453 QLPAIEEKLGRKI 465


>gi|311279320|ref|YP_003941551.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308748515|gb|ADO48267.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
          Length = 457

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 134/384 (34%), Positives = 207/384 (53%), Gaps = 9/384 (2%)

Query: 2   DFADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            FA+L  L  + +  + + GY   TP+Q  T+P +L   DV   A+TG+GKTA+F L +L
Sbjct: 3   SFAELNALPEEQLNNLNELGYQTMTPVQAATLPAILAGKDVRAQAKTGSGKTAAFGLGLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKL 119
             ++  +    + ++L+L PTRELA QVA    K  +       L + G  PF  Q   L
Sbjct: 63  QHIDASQ---FITQSLVLCPTRELADQVASALRKLARFMPNIKVLTLCGGLPFSVQRDSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +++ TPGR+LDH  +  + ++ ++ LV+DEADRMLDMGF   +  + +  P  RQ
Sbjct: 120 THAPHIIVATPGRLLDHLKKETVSLDALQTLVLDEADRMLDMGFADALDEVIAWAPEKRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   E+        +  +R  +     T + +       Y         L Q L
Sbjct: 180 TLLFSATWPAEIAA----ISRRIQRDPLTIEIDTVDELPAVEQRFYEVSRSGKIGLLQTL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            SQ    + ++FCN KK+   +C +L     SV A+HG+++QR R + L  F  G+ +++
Sbjct: 236 LSQHQPASCVVFCNTKKDCQAVCDALSDSNQSVLALHGDMEQRDRDQTLVRFANGSSRVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +L A E+ +  +A
Sbjct: 296 VATDVAARGLDIKALEMVINYELSWDPEVHVHRIGRTARAGERGLAISLCAPEEAQRANA 355

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE 383
           +E+++  K+DW          PLE
Sbjct: 356 LEEMLNVKLDWQPLPNGVRIAPLE 379


>gi|224092470|ref|XP_002309623.1| predicted protein [Populus trichocarpa]
 gi|222855599|gb|EEE93146.1| predicted protein [Populus trichocarpa]
          Length = 428

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 92/376 (24%), Positives = 159/376 (42%), Gaps = 3/376 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ +++D+G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 49  FRDFLLKPELLRSIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 108

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V                   + F  Y  +  + V      I       K E  
Sbjct: 109 IEPTSGQVIALVLCHTRELAYQICHEFERFSTYLPDTKVAVFYGGVNIKTHKDLLKNECP 168

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L N    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 169 HIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 228

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  I V+  +               +  K        L   
Sbjct: 229 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNR--KLNDLLDA 286

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L +  F    IH  + Q  R+     FKEG  +++VA+
Sbjct: 287 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVAT 346

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKHIDAIE 361
           DL  RG+DI  V  V N+D+P+ A+ Y+HR+GR GR G  G A T V+   D   ++ ++
Sbjct: 347 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQ 406

Query: 362 KLIEKKVDWLNGDLSS 377
           +  E  +  L   + +
Sbjct: 407 ERFEVDIKELPEQIDT 422


>gi|327348721|gb|EGE77578.1| ATP-dependent RNA helicase HAS1 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 639

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 123/411 (29%), Positives = 202/411 (49%), Gaps = 13/411 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L LS K + A+ D  +   T IQ + IP +L   DV G A+TG+GKT +F++P + 
Sbjct: 161 KFSELDLSDKTMKAIADMKFETMTEIQRRGIPPLLAGRDVLGAAKTGSGKTLAFLIPAVE 220

Query: 62  ILEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + R    +I + PTRELA Q+     +   +++ T  ++IGG    A+ +KL 
Sbjct: 221 MLSALRFKPRNGTGVIVISPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAEKLV 280

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-VPFTR 178
           +G ++LI TPGR +    +    +  N++ LVIDEADR+L++GF   ++ I  +     R
Sbjct: 281 KGVNLLIATPGRLLDHLRDTPGFVFKNLKALVIDEADRILEVGFEDEMRQIVKILPSEDR 340

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT T +++ ++   L+               T+E          S K  LL   
Sbjct: 341 QTMLFSATQTTKVEDLARISLRQGPLYINVDHRKEHSTVEGLEQGYVICDSDKRFLLLFS 400

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +    V      L      V  +HG   Q+ R      F   T   
Sbjct: 401 FLKRNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNATQGT 460

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R A   G++   +   ++  +
Sbjct: 461 LICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGANGKGRSLMFLQPSEVGFL 520

Query: 358 DAIEKLIEKKVDWLNGDLS-----SLNPPLEKIDIAQHNHARKNNPIPQKS 403
             ++   E +V  +  D       ++   LEK+ I Q+ +  K+     +S
Sbjct: 521 KHLK---EARVPVVEFDFPAKKIVNVQSQLEKL-IGQNYYLNKSAKDGYRS 567


>gi|289671093|ref|ZP_06492168.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 446

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 127/422 (30%), Positives = 217/422 (51%), Gaps = 6/422 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F+   L P ++  +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++   
Sbjct: 9   LTFSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVTVV 68

Query: 59  --MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             +L        +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q 
Sbjct: 69  NRLLNRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQR 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIE-ILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L++G DV+I TPGR++D+  + K++  +   I V+DEADRM D+GFI  I+ +   +P
Sbjct: 129 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                     + T   + +   +    +  ++   + T  T        Y    ++   L
Sbjct: 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETI-TAARVRQRIYFPSDEEKQTL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L S+      ++F N K  V  +  +LE+ G+ V  + G++ Q+ R  +L+ F++G 
Sbjct: 248 LLGLLSRSEGARTMVFVNTKAFVERVARALERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAI 367

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +  IE  IE+K+         L P      +        ++      T F + ++  ++
Sbjct: 368 SLPDIEAYIEQKIPVEPVTSELLTPLPRAARVPVEGEEVDDDAGDSVGTIFRQAREQRAA 427

Query: 416 QK 417
           ++
Sbjct: 428 EE 429


>gi|90409951|ref|ZP_01217968.1| putative ATP-dependent RNA helicase DbpA [Photobacterium profundum
           3TCK]
 gi|90329304|gb|EAS45561.1| putative ATP-dependent RNA helicase DbpA [Photobacterium profundum
           3TCK]
          Length = 462

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 130/405 (32%), Positives = 216/405 (53%), Gaps = 16/405 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L   ++  +   GY   TPIQ +++P +L   DV    +TG+GKTA+F L +L  
Sbjct: 6   FSTLNLHADLLKNLTSLGYESMTPIQAQSLPHILAGEDVIAQGKTGSGKTAAFGLGLLEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA    K  +  +    L +  G+PF  Q   LE 
Sbjct: 66  LNVKRFRVQ---SLVLCPTRELADQVAKEIRKLARTIHNIKVLTLCGGMPFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI +H  +G L ++++E+L++DEADRML+MGF   +  I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIEEHVRKGTLNLDDLEMLILDEADRMLEMGFQDSLDEIIDAAPQRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   +++ +++       +  +    ST +             +++     +LL  
Sbjct: 183 LFSATYPPQIKSIADRI---MFKPVMAKVESTHDDSSIQQHFYKVDGNEQRLTALRLLLL 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   ++ ++FCN K+    +   L   GFS  A+HG+++QR R + L  F   +  ++VA
Sbjct: 240 KHRPESTVVFCNTKREAQEVSDDLVDYGFSSIALHGDLEQRERDQALVRFANKSTSVLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N+ +    E ++HRIGRTGRAG  G A +L++ ++   +  +E
Sbjct: 300 TDVAARGLDIDSLDAVINYHLARDTEVHVHRIGRTGRAGSKGVACSLISDKEHYKVAMLE 359

Query: 362 KLIEKKV--DWLNG----DLSSLNPPLEKIDIAQHNHARKNNPIP 400
             +++ +  + L      D  +  P +  + I   +  ++    P
Sbjct: 360 DYLDRAISGEALPSMDLLDQPTFRPAMTTLQI---DGGKRQKIRP 401


>gi|241950191|ref|XP_002417818.1| ATP-dependent DEAD-box RNA helicase, putative [Candida dubliniensis
           CD36]
 gi|223641156|emb|CAX45533.1| ATP-dependent DEAD-box RNA helicase, putative [Candida dubliniensis
           CD36]
          Length = 563

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 116/438 (26%), Positives = 192/438 (43%), Gaps = 15/438 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F D+     ++ KV+  +++  +++PT IQ ++IP+ L   D+   A TG+GKT +F++
Sbjct: 122 SFQDMIGRFHINKKVLSNLIENEFIEPTTIQCESIPITLNNRDLIACAPTGSGKTLAFLI 181

Query: 58  PMLTIL-EKGRARVRMPRTLILEPTRELAAQVADNFEK--YGKNYNLTVALLIGGIPFEA 114
           P++  +  K  ++    R LI+ PT ELA Q+    E    G        L         
Sbjct: 182 PLVQQILSKTVSKNYGIRGLIISPTNELAVQIFQELEIITRGCKQINVAILSKQLASKLN 241

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
            N       D+++ TP R++D   +G + ++ IE L+IDEAD++ D GF      I +  
Sbjct: 242 NNIIKSSKYDIIVSTPLRLIDVVKQGNMDLSKIEQLIIDEADKLFDHGFAEQTDEILTHC 301

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              +      +       +   + +       +      A       +        K   
Sbjct: 302 INPKIRKSIFSATIPSSVEEMAHSIMKDPLRIIIGHKEAASNTIDQKLVFTGNEQGKLLA 361

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           ++Q++Q  +     IIF         L H L     +V  IH     + R +++  FK G
Sbjct: 362 IRQMIQQGEFKPPIIIFLQSITRAKALFHELLYDRLNVDVIHAERTPKQREEVIKRFKNG 421

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I +++ +D+ ARG+D   V  V N+DVP  A+ Y+HRIGRTGR G+ GKA T   KED 
Sbjct: 422 DIWVLITTDVLARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKSGKAVTFFTKEDD 481

Query: 355 KHIDAIEKLIEKK------VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           K I  I  ++++         W+  D+  L+   EK  I  H   RK      K     R
Sbjct: 482 KAIKPILNVMKQSGCNDGYSQWME-DMGKLSKK-EKKQIKTHEIQRKKISTVPKVIKQKR 539

Query: 409 RKKNYSSQKSHIPLKESE 426
           +++      S    +ES 
Sbjct: 540 KQRQDMIAASKRRKQESH 557


>gi|167384693|ref|XP_001737060.1| ATP-dependent RNA helicase DBP4 [Entamoeba dispar SAW760]
 gi|165900336|gb|EDR26680.1| ATP-dependent RNA helicase DBP4, putative [Entamoeba dispar SAW760]
          Length = 697

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 96/400 (24%), Positives = 161/400 (40%), Gaps = 9/400 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    +S   +  +    ++  TPIQ   IP  L   D+ G A+TG+GKT +F++P++  
Sbjct: 91  FDQFPISKSTIQLLKKNQFITMTPIQRAAIPHALAGRDIIGAARTGSGKTLAFLIPLIEF 150

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + + R         I+       AQ   +          T AL+ GG   + + K +   
Sbjct: 151 MYRSRWTELDGLCSIILSPTRELAQQIFDVFASITGERFTAALITGGKDTKEEAKVIRLM 210

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++      +    N        + IL++DEADR+LDMGF   +  I   +P  RQT+L
Sbjct: 211 NVLICTPGRLLYHLDNTPHFNTTPLRILILDEADRILDMGFKKDLTAILEHLPKQRQTML 270

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT T  +Q +                 +   T E                +       
Sbjct: 271 FSATQTKSVQDLI-RLSLRHPEYISVDEKAQYATPESLNQTYMLLGDGDKINVLFSFIRT 329

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI--HGNIDQRSRMKILSNFKEGTIQLMV 300
            T    I+F    K V     + +K          +G   Q SR + LS F +    ++ 
Sbjct: 330 HTNSKMIVFFQTTKEVRFFFETFKKLRVGAVLYLLYGRQSQNSRNEQLSTFTKEKRGILF 389

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A+RGLDI  V  +  +D P     YIHR+GRT R   +G+A  L+   +   I+ +
Sbjct: 390 CTDIASRGLDIQGVDWIVQYDCPEDTAQYIHRVGRTARLNHNGQALLLLTHNEQAFIEQL 449

Query: 361 EKL------IEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           EK       +E  +  +    + +   + ++ I +H   +
Sbjct: 450 EKAKVPLNRVEPNIARMKNIANDITELMIELPIIKHYAEK 489


>gi|153834391|ref|ZP_01987058.1| ATP-independent RNA helicase DbpA [Vibrio harveyi HY01]
 gi|148869239|gb|EDL68261.1| ATP-independent RNA helicase DbpA [Vibrio harveyi HY01]
          Length = 459

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 153/460 (33%), Positives = 243/460 (52%), Gaps = 19/460 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL+P ++  +    Y   TPIQ  ++P +L + DV G  +TG+GKTA+F L +L+
Sbjct: 5   TFDQVGLNPALLETLESLNYTHMTPIQALSLPAILNQRDVIGQGKTGSGKTAAFGLGVLS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+   +L+L PTRELA QVA      G+  +    L +  G+P   Q   LE
Sbjct: 65  NLNVKRFRVQ---SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH  +G++ +  +  LV+DEADRML+MGF   +  I    P  RQT
Sbjct: 122 HGAHILVGTPGRILDHLEKGRINLEELNTLVLDEADRMLEMGFQDALDAIIDAAPKQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  ++++++++  +Q+P+ I+V +   T +T          + S+        L 
Sbjct: 182 LLFSATFPEKIEQIAQRIMQSPEMIKVES---THDTSSIAQYFYNVEGSEARDEALANLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++FCN KK V N+   L  +GFSV  +HG+++QR R + L  F   ++ ++V
Sbjct: 239 LTHQPESAVVFCNTKKEVQNVADELHHKGFSVVDLHGDLEQRERDQALVQFANKSVSILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+   ++D   +  I
Sbjct: 299 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARI 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK------IDIAQHNHARKNNPI-----PQKSTGFDRR 409
           E+ ++  V        S   P +       ID  +    R  + +         TG    
Sbjct: 359 EEYLDMDVVPATLPAKSTQQPYQAKMVTINIDGGKKQKVRAGDILGCLTGKNGITGAQVG 418

Query: 410 KKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNM 449
           K    + +S++ +++S    K  Q I         FR  +
Sbjct: 419 KIQLMAMRSYVAVEKS-VAKKALQTISNGKMKGRQFRARI 457


>gi|51595988|ref|YP_070179.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis IP
           32953]
 gi|186895088|ref|YP_001872200.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis PB1/+]
 gi|51589270|emb|CAH20891.1| ATP-dependent RNA helicase [Yersinia pseudotuberculosis IP 32953]
 gi|186698114|gb|ACC88743.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           PB1/+]
          Length = 460

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 124/374 (33%), Positives = 201/374 (53%), Gaps = 8/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L  + +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L 
Sbjct: 5   SFSSLTLPAEQLSNLNELGYTEMTPVQAAVLPAILNGQDVRAKAKTGSGKTAAFGIGLLD 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            +  G     + + L+L PTRELA QV+    +  +       L +  G P   Q   L 
Sbjct: 65  KIAVGE---FVTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLV 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRI +H  +  L+++ ++ LV+DEADRMLDMGF   I ++ +  P  RQT
Sbjct: 122 HAPHIVVGTPGRIQEHLRKKTLVLDELKTLVLDEADRMLDMGFSDAIDDVIAYTPPQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +++         +R  +N      +         +    +K   L   + 
Sbjct: 182 LLFSATYPSGIEQ----ISARVQRQPLNVEVGDTDEEPAIEQVFFETTREKRLPLLISVL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+  ++  SLE +G SV A+HG+++QR R ++L  F   + +++V
Sbjct: 238 SYYQPASCVVFCNTKKDCQSVYESLESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI D+  V NF++    E ++HRIGRTGRAG  G A +L   +++     I
Sbjct: 298 ATDVAARGLDIKDLELVINFELAFDPEIHVHRIGRTGRAGMSGLAVSLCTPQEMVRAHTI 357

Query: 361 EKLIEKKVDWLNGD 374
           E  ++ K+ W   +
Sbjct: 358 EDYLQIKLKWTPAE 371


>gi|143456452|sp|Q0DB53|RH52A_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52A
 gi|51090883|dbj|BAD35456.1| putative DEAD-box protein 3 [Oryza sativa Japonica Group]
 gi|222635845|gb|EEE65977.1| hypothetical protein OsJ_21891 [Oryza sativa Japonica Group]
          Length = 602

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 143/385 (37%), Positives = 203/385 (52%), Gaps = 23/385 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F   GL   V+  V   GY  PTP+Q  ++P+ L   D+   AQTG+GKTA+F LP+   
Sbjct: 86  FEAAGLVEAVLRNVARCGYESPTPVQRYSMPIALAGRDLMACAQTGSGKTAAFCLPVVSG 145

Query: 60  ----------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                                  PR L+L PTRELAAQ+ +  +K+     L V +  GG
Sbjct: 146 LVAAGGSGIGHRERSSFNRAAAKPRALVLAPTRELAAQINEEAKKFSFQTGLRVVVAYGG 205

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
            P   Q + LERGAD+L+ TPGR++D   R K+ +  I+ LV+DEADRMLDMGF P I+ 
Sbjct: 206 TPMYNQLRDLERGADILVATPGRLVDMVERSKVSLEAIKYLVMDEADRMLDMGFEPQIRK 265

Query: 170 ITSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I   +       RQT+LFSAT   E+Q+++ +FL N   I V    S+ + I        
Sbjct: 266 IVERMNMPRKSVRQTMLFSATFPPEIQRLASDFLSNYIFITVGRVGSSTDLIMQKVELLS 325

Query: 226 AQYSKKCALLQQLLQSQDTMKN------GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
               +   L     QS     +       ++F   K+   +L + L  +GF   AIHG+ 
Sbjct: 326 DGEKRGYLLDLLQRQSVGVANSKLQQPLTLVFVETKREADSLRYWLYSKGFPATAIHGDR 385

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q+ R   L +FK G   +MVA+D+A+RGLD+P+V HV N+D+P   E+Y+HRIGRTGRA
Sbjct: 386 TQQERESALRSFKTGLTPIMVATDVASRGLDVPNVAHVINYDLPKSIEDYVHRIGRTGRA 445

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLI 364
           G+ G A     + D      + +L+
Sbjct: 446 GKAGSATAFFTESDHSLAKGLLELM 470


>gi|332653730|ref|ZP_08419474.1| ATP-dependent RNA helicase DeaD [Ruminococcaceae bacterium D16]
 gi|332516816|gb|EGJ46421.1| ATP-dependent RNA helicase DeaD [Ruminococcaceae bacterium D16]
          Length = 391

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 141/383 (36%), Positives = 209/383 (54%), Gaps = 8/383 (2%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
           ADLGLSP+++ A+   GYV+ TP+Q  +IP  ++  DV   A TGTGKT +F +PM+  +
Sbjct: 15  ADLGLSPELMRAIDKKGYVQATPVQGGSIPYFMEYKDVIAKAPTGTGKTFAFGIPMVEHI 74

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEK-YGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +     V+    L+L PTRELA Q+ D           +    L GG P + Q  +L++ 
Sbjct: 75  DPESRDVQ---GLVLAPTRELAIQIRDELRDLCAFKEGVRTVCLYGGQPIDKQITQLKKD 131

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++DH  R  + ++ ++ +V+DEADRMLDMGFI  +  I  L+P  R   L
Sbjct: 132 PQIVVATPGRLMDHVKRRTVRLDKVQTVVLDEADRMLDMGFIKDVTRILDLMPKRRNLGL 191

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E+  +S  + ++P  I V         I    +           +        
Sbjct: 192 FSATISREVMDISWVYQRDPVEITVRADEENKPDITQYRLDVERNEKVDTMVRL---MEM 248

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I FCN K     L   L  +  +  AIHG+I QR R K L  F+EG ++++ A+
Sbjct: 249 GGYDRVIAFCNTKNMTDRLAGLLRMRHITCEAIHGDIQQRVREKTLQKFREGQLRVLAAT 308

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKHIDAIE 361
           D+AARGLDI DV  VFN+DVP+  E YIHRIGRTGRA RHG AF+LV+   +   +D I+
Sbjct: 309 DVAARGLDIDDVDAVFNYDVPDENEYYIHRIGRTGRAKRHGVAFSLVSNITEGIRLDDIQ 368

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
           K     + +++ +      P +K
Sbjct: 369 KNTGNNIQYVHLNAQGELEPGKK 391


>gi|162447297|ref|YP_001620429.1| DEAD box ATP-dependent RNA helicase [Acholeplasma laidlawii PG-8A]
 gi|161985404|gb|ABX81053.1| DEAD box ATP-dependent RNA helicase [Acholeplasma laidlawii PG-8A]
          Length = 547

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 138/371 (37%), Positives = 212/371 (57%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +      A+   G+ + TPIQ + IP ++   D+ G AQTGTGKT +F +PM+  
Sbjct: 5   FNDLPILDTTKVALEKLGFTEATPIQEQAIPKMILGLDLIGQAQTGTGKTFAFGIPMVEK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVAD-NFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +    + +    LIL PTREL  QV     +       L V  ++GG  +E Q K+L+R
Sbjct: 65  TDTSLRQTQG---LILTPTRELTNQVYKEIIKLVKFYPELRVTTIVGGESYEKQFKELDR 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI+DH +RG + +++I  L +DEAD ML MGF   I+ I    P TRQT+
Sbjct: 122 KPHIIVATPGRIIDHIDRGTVDLSHITTLTLDEADEMLKMGFQDDIERILQTTPETRQTV 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   ++K+++N+ +NP+ I++   S T + I     A +    K+   L + L  
Sbjct: 182 LFSATMPAFIKKIAKNYQKNPELIKIEAKSLTVDRI---TQAYFLVKEKEKQSLLERLLD 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     IIF N K     +  SL+K GF+  A+HG++ Q  R  +++ F+   + ++VA
Sbjct: 239 FENPSTAIIFVNTKAGADRITESLQKAGFTADALHGDLKQSQRTYVMNRFRSKQLSILVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ DV  + N+D+P + E Y+HRIGRTGRAG+ GKAFT V     + +D + 
Sbjct: 299 TDVAARGLDVDDVEIIVNYDLPQQDEIYVHRIGRTGRAGKKGKAFTFVTPLKRRMLDMLA 358

Query: 362 KLIEKKVDWLN 372
              +  +  L 
Sbjct: 359 HYTKADIKRLE 369


>gi|328772256|gb|EGF82294.1| hypothetical protein BATDEDRAFT_34342 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 741

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 144/489 (29%), Positives = 231/489 (47%), Gaps = 27/489 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L LS  V+ ++   GYV+PT IQ + IPL LQ  D+CG A TG+GKTA+F++P++ 
Sbjct: 188 SFQSLQLSRPVLKSIAALGYVRPTDIQARAIPLALQGRDICGSAVTGSGKTAAFIIPIVE 247

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L          R LIL PTREL  Q         K  +++  L +GG+P + Q  +L  
Sbjct: 248 RLLFRPKNDATTRVLILVPTRELGVQCQSVAISISKFTDISTCLCVGGLPTKTQEAELRL 307

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++DH +       + I+ILVIDEADR+LD GF   +  I    P TRQT
Sbjct: 308 RPDIIIATPGRLIDHIHNSPSFFLDAIDILVIDEADRILDDGFDAELNEIIKHTPRTRQT 367

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATMTD +  + +  L  P R+ V+  +     +   F+            +   L 
Sbjct: 368 MLFSATMTDNVDDLIKLSLNRPVRLFVDQNTKLTNRLVQEFIRVRGHKETSRPAILAALC 427

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+      I+F   K    ++       G     +HGN+ Q  R++ L  F+E  +  ++
Sbjct: 428 SRTYTSETIVFFRSKAAAHHMKIIFGFLGLKAAELHGNLTQLQRLEALELFREKKVGFLL 487

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLDI  V  V N+D+P     Y+HR+GRT R    G+A +LV + D   +   
Sbjct: 488 ATDLASRGLDISGVKTVINYDMPKSYSIYVHRVGRTARGDLAGRAVSLVGEADRALLKMA 547

Query: 361 EK----LIEKKV------DWLNGDLSSLNP----------PLEKIDIAQHNHARKNNPIP 400
            K     ++ ++      +   G L+ L              +++  A+    R  N + 
Sbjct: 548 IKNTRDAVKNRIVPANVVEKYEGILAKLKDSIKEIYIEEKEEKELSSAELQITRAQNILG 607

Query: 401 QKSTGFDRRKKN-YSSQKSHIPLK----ESEKISKLQQDIQENDADSLGFRG-NMPAFML 454
            +     R  +  + S+K     K    ES +   L   ++    ++   +  + P   L
Sbjct: 608 HQDEIMSRPARTWFQSEKERTDSKDLDMESAQPEPLPNTVKRRFPNTDSKKSEHGPMDGL 667

Query: 455 PKNRGKLND 463
            + + ++ +
Sbjct: 668 SRKKRRMKE 676


>gi|296161858|ref|ZP_06844659.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295887877|gb|EFG67694.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 467

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 148/449 (32%), Positives = 225/449 (50%), Gaps = 18/449 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P  +  +   GYV+ TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 11  FSQLSLPPATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + ++L PTRELA QV     +  +       L +  G P   Q   LE 
Sbjct: 71  LDV---RNFAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  RG L + ++  LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 128 GAHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVKQCPKERQTL 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K+S+ F     R       +            Y     +      LL +
Sbjct: 188 LFSATYPEGIVKLSQQF----LRNPKEVKLAERHDNTKIRQRFYEVTEDERLHAVGLLLN 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 244 HYRPVSTLAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L +  ++  + ++E
Sbjct: 304 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMSEMGRVGSLE 363

Query: 362 KLIEKKVDWLN-GDLSS-----LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS- 414
           +  ++ V+W    +L++     L PP+E + I      RK    P    G    +  ++ 
Sbjct: 364 QAQKRDVEWHKLSELTATSNERLLPPMETLQIL---GGRKEKIRPGDVLGALTGEAGFAG 420

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSL 443
           SQ   I + E      +++ +  +    L
Sbjct: 421 SQIGKINVTEMSTYVAVERSVARDAVRKL 449


>gi|295675110|ref|YP_003603634.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
 gi|295434953|gb|ADG14123.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 467

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 145/405 (35%), Positives = 212/405 (52%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L P ++  +   GYV+ TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 11  FSELPLPPAMLANLTQLGYVEMTPIQAASLPIALGGHDLIAQAKTGSGKTAAFSLALLAR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + ++L PTRELA QV     +  +       L +  G P   Q   LE 
Sbjct: 71  LDA---RKFDTQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH  RG L++  +  LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 128 GAHVVVGTPGRIMDHLERGTLVLQALNTLVLDEADRMLDMGFFDDIAKVARQCPKERQTL 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K+S+ F     R       +            Y     +      LL +
Sbjct: 188 LFSATYPEGIAKLSQQF----LRNPKEVKLAERHDDSKIRQRFYEVTEDERLHAVGLLLN 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 244 HYRPVSTIAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E + HRIGRTGRA + G A +L + +++  +  IE
Sbjct: 304 TDVAARGLDIAQLEAVINVDVTPDPEVHTHRIGRTGRADQEGWALSLASMDEMGRVGGIE 363

Query: 362 KLIEKKVDWLN-GDLSS-----LNPPLEKIDIAQHNHARKNNPIP 400
           ++ ++ V+W    +L +     L PP+E + I      RK+   P
Sbjct: 364 QVHKRDVEWHKLAELKAASNDPLLPPMETLQIL---GGRKDKIRP 405


>gi|156037652|ref|XP_001586553.1| hypothetical protein SS1G_12540 [Sclerotinia sclerotiorum 1980]
 gi|160380650|sp|A7F4L5|DRS1_SCLS1 RecName: Full=ATP-dependent RNA helicase drs1
 gi|154697948|gb|EDN97686.1| hypothetical protein SS1G_12540 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 801

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 139/389 (35%), Positives = 202/389 (51%), Gaps = 4/389 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++  +   G+ +PTPIQ KTIP+ L   DV G A TG+GKTA+F++P+L 
Sbjct: 269 TFQSMSLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFIVPVLE 328

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q      K   + ++   L +GG+  + Q  +L  
Sbjct: 329 RLLYRPKKVPTSRVAILMPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQEAELRL 388

Query: 122 GADVLICTPGRILDHFNRGKLLMNNI-EILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH         +  EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 389 RPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEAGFADELNEILTTIPKSRQT 448

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM+  +  +    L  P R+ V++  STA T+   F+        K       L 
Sbjct: 449 MLFSATMSSSVDNLIRVGLNRPVRLLVDSQKSTAGTLTQEFIRLRPGREGKRMGYLLYLC 508

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       I+F  QKK            G     +HG++ Q  R+K +  F++G    ++
Sbjct: 509 ANVYTDRVIVFFRQKKEAHRARIIFGLSGLKATELHGSMSQEQRIKSVEAFRDGKASFLL 568

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLDI  V  V N++ P   + Y+HR+GRT RAGR G+A T+ A+ D K + A 
Sbjct: 569 ATDLASRGLDIKGVDTVINYEAPQSHDIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAA 628

Query: 361 EKLIEK---KVDWLNGDLSSLNPPLEKID 386
            K       KV     + S  +   EK+D
Sbjct: 629 VKASRTQGAKVVSRVIEASEADSWSEKVD 657


>gi|198429557|ref|XP_002122407.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 18
           isoform 2 [Ciona intestinalis]
          Length = 575

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 115/393 (29%), Positives = 201/393 (51%), Gaps = 10/393 (2%)

Query: 2   DFADL---GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
            FA L   G+S   + A+ D G+     IQ K+IP +L+  D+   A+TG+GKT +F++P
Sbjct: 88  SFASLATLGVSDLTLKAIEDMGFSHMMEIQAKSIPPLLEGRDLLAAAKTGSGKTLAFLIP 147

Query: 59  MLTILEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            + ++ K R   R    +I + PTRELA Q+    +   K++  T  L++GG    ++ K
Sbjct: 148 AIELMYKLRFMPRNGTGVIVISPTRELAMQIYGVLQDLLKHHCQTYGLIMGGSNRSSEAK 207

Query: 118 KLERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           KL  G ++++ TPGR +    N  + +  N++ L+IDEADR+L++GF   ++ I  L+P 
Sbjct: 208 KLGNGINIIVATPGRLLDHLQNTQEFMFRNLQCLIIDEADRILEVGFEEEMKQIVRLLPK 267

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT T +++ ++   L+          S  + T++          S+K  L+ 
Sbjct: 268 RRQTMLFSATQTKKIEDLARVSLKKMPLYVGVDDSEQSATVDGLEQGYAVCPSEKRFLVL 327

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                ++  K  ++F +   +V      L        +IHG   Q  R      F     
Sbjct: 328 FTFLRRNRDKKVMVFFSSCMSVKFHYELLNYIDLPCMSIHGRQKQTKRTTTFFQFCNADK 387

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDI 354
            +++ +D+AARGLDIP+V  +  FD P+  + YIHR+GRT R   GR G A   +   ++
Sbjct: 388 GILLCTDVAARGLDIPEVDWIVQFDPPDDPKEYIHRVGRTARGVNGR-GHALLFLRPSEL 446

Query: 355 KHIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
             +  +   K+   + ++    ++++   LE++
Sbjct: 447 GFLHYLRHAKVPVSEFEFSWSKIANIQTQLERL 479


>gi|198429555|ref|XP_002122319.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 18
           isoform 1 [Ciona intestinalis]
          Length = 627

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 115/393 (29%), Positives = 201/393 (51%), Gaps = 10/393 (2%)

Query: 2   DFADL---GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
            FA L   G+S   + A+ D G+     IQ K+IP +L+  D+   A+TG+GKT +F++P
Sbjct: 140 SFASLATLGVSDLTLKAIEDMGFSHMMEIQAKSIPPLLEGRDLLAAAKTGSGKTLAFLIP 199

Query: 59  MLTILEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            + ++ K R   R    +I + PTRELA Q+    +   K++  T  L++GG    ++ K
Sbjct: 200 AIELMYKLRFMPRNGTGVIVISPTRELAMQIYGVLQDLLKHHCQTYGLIMGGSNRSSEAK 259

Query: 118 KLERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           KL  G ++++ TPGR +    N  + +  N++ L+IDEADR+L++GF   ++ I  L+P 
Sbjct: 260 KLGNGINIIVATPGRLLDHLQNTQEFMFRNLQCLIIDEADRILEVGFEEEMKQIVRLLPK 319

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT T +++ ++   L+          S  + T++          S+K  L+ 
Sbjct: 320 RRQTMLFSATQTKKIEDLARVSLKKMPLYVGVDDSEQSATVDGLEQGYAVCPSEKRFLVL 379

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                ++  K  ++F +   +V      L        +IHG   Q  R      F     
Sbjct: 380 FTFLRRNRDKKVMVFFSSCMSVKFHYELLNYIDLPCMSIHGRQKQTKRTTTFFQFCNADK 439

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDI 354
            +++ +D+AARGLDIP+V  +  FD P+  + YIHR+GRT R   GR G A   +   ++
Sbjct: 440 GILLCTDVAARGLDIPEVDWIVQFDPPDDPKEYIHRVGRTARGVNGR-GHALLFLRPSEL 498

Query: 355 KHIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
             +  +   K+   + ++    ++++   LE++
Sbjct: 499 GFLHYLRHAKVPVSEFEFSWSKIANIQTQLERL 531


>gi|158287566|ref|XP_309566.4| AGAP011084-PA [Anopheles gambiae str. PEST]
 gi|157019713|gb|EAA05253.5| AGAP011084-PA [Anopheles gambiae str. PEST]
          Length = 809

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 140/455 (30%), Positives = 235/455 (51%), Gaps = 13/455 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP + 
Sbjct: 175 SFYQMDLSRPLMKAIGALGYIYPTPIQASTIPIALMGRDICGCAATGTGKTAAYMLPTIE 234

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L       +    + +L PTREL AQV    ++  +  N+ V + IGG+  +AQ   L 
Sbjct: 235 RLLYKPNVAQAVTRVLVLVPTRELGAQVYQVAKQLTQFTNVDVGIAIGGLDVKAQEAVLR 294

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  DV+I TPGR++DH         ++IEIL++DEADRMLD  F   ++ I      TRQ
Sbjct: 295 KNPDVVIATPGRLIDHIKNTPSFSLDSIEILILDEADRMLDEYFAEQMKEIIRSCSATRQ 354

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMT+E++ ++   L+ P +I VN   + A  +   F+            +   L
Sbjct: 355 TMLFSATMTEEVKDLAAVSLKKPVKIFVNNNQTVAFNLRQEFIRIREGREADREAILAAL 414

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + ++F   K+    L   L   G     +HG++ Q  R++ L  FK+  + ++
Sbjct: 415 VCRTFHDHCMVFVQTKRTAHRLRILLGLLGVKTGELHGDLTQAQRLESLKEFKDEQVDIL 474

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAG+ G + +L  +++ K +  
Sbjct: 475 IATDVAARGLDISTVKTVINFVMPATLEHYIHRVGRTARAGKAGVSVSLAGEQERKIVKE 534

Query: 360 I---------EKLIEKK-VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           I          ++I    ++     +++L P ++++ +A+    +      Q+ T  +R+
Sbjct: 535 IVKNAVSSVKNRIIPLDIIEKYRNKVAALEPEIDRV-LAEERAEKLLRQTEQQLTSAERK 593

Query: 410 KKNYSSQKSHIPLKESEKISKLQQDIQENDADSLG 444
               + + +   +    +  + Q + +E      G
Sbjct: 594 LLGNAGKAAKQDVPPPREWFQTQHERREEKNRLAG 628


>gi|113197617|gb|AAI21215.1| zinc responsive protein Zd10A [Xenopus (Silurana) tropicalis]
          Length = 479

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 98/380 (25%), Positives = 171/380 (45%), Gaps = 13/380 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  L L  +++  +   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 94  SFEKLHLKDELLRGIYAMGFNRPSKIQENALPMMLADPPQNLIAQSQSGTGKTAAFVLAM 153

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++    +   P+ + L PT ELA Q     E+ GK  N    +         +  ++
Sbjct: 154 LSRVDA---KKTYPQCMCLSPTFELALQTGKVVEEMGKFCNGIKVIYAVRGNRPGKGTQI 210

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E    +             R   + N    ++ +    +   G   +   +   +P T Q
Sbjct: 211 EAQIVIGTPGTVLDWCFKLRLINVKNISVFVLDEADVMINVQGHSDHSVRVKRSMPKTCQ 270

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D +   +E  + +P  I++     T + I+  +     +  K  AL    +
Sbjct: 271 MLLFSATFGDSVWAFAERIVPDPNIIKLKKEELTLDNIQQFYDKCENKEQKYSALC--NM 328

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   I+FC  +K    L   + + G  V  + G +    R +++  F+EG  +++
Sbjct: 329 YGIITIAQAIVFCQTRKIANWLSRHMLEDGHQVALLSGELSVCDRAEMIQRFREGKDKVL 388

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRA------ENYIHRIGRTGRAGRHGKAFTLVAKED 353
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  L+    
Sbjct: 389 VTTNVCARGIDVEQVSIVVNFDLPVNVDGSVDFETYLHRIGRTGRFGKKGIAVNLIENSF 448

Query: 354 IKHIDAIEKLIEKKVDWLNG 373
           +  +  IE+    K+  LN 
Sbjct: 449 VYMLKEIEEHFTTKIKKLNS 468


>gi|256074321|ref|XP_002573474.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238658654|emb|CAZ29706.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 829

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 118/365 (32%), Positives = 191/365 (52%), Gaps = 3/365 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS      ++  GY  PTPIQ K IP++L   DV  +A+TG+GKTA+F++P+   
Sbjct: 32  FQSMGLSVATFNGIIKKGYKIPTPIQRKAIPIILSGRDVVSMARTGSGKTAAFLIPL--F 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +        PR LI+ PTRELA Q  +  ++ GK   L   +++GG   E Q   L + 
Sbjct: 90  EKFPCHSPAGPRALIMSPTRELAIQTLNFTKELGKFTPLKATIILGGDKMEEQFAALHKS 149

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L + +IE +V DE DR+ ++GF   +      +P +RQTL+
Sbjct: 150 PDIIIATPGRFLHVLMEMNLSLKSIEYVVFDEGDRLFELGFAEQLSETLKRLPRSRQTLI 209

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L +P  + ++   S           T     K   L+  L +  
Sbjct: 210 FSATLPKNLVEFARAGLVDPILLRLDL-HSKLSQDLKLAHITCLPEEKNVILVHLLGKVI 268

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  ++F   K +V +    L   GF    IH  +D  +R   L  F+  T ++++ +
Sbjct: 269 HKDEQAVVFFATKHHVESFQMLLTDLGFGCTCIHSGLDPSARNLALKKFRSRTARVLLVT 328

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP + +V NF  P + + ++HR+GR  RAGR G A++LV  E++ ++  +  
Sbjct: 329 DVAARGVDIPHLDNVINFHFPAQPKLFLHRVGRVARAGRRGVAYSLVDPEELPYLLDVFM 388

Query: 363 LIEKK 367
            + K+
Sbjct: 389 FLGKE 393


>gi|194208790|ref|XP_001498450.2| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19B isoform 1
           [Equus caballus]
          Length = 445

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 103/382 (26%), Positives = 177/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 59  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 118

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++      R P+ L L PT ELA Q     E+ GK +               + +K+
Sbjct: 119 LSRVQPAE---RYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKI 175

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 176 SEHIVIGTPGTVLDWCAKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 235

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V    +  K        L
Sbjct: 236 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNRDEK--FQALCNL 293

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 294 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 353

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 354 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 413

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 414 SMNILNRIQEHFNKKIERLDTD 435


>gi|194856731|ref|XP_001968815.1| GG24297 [Drosophila erecta]
 gi|195473856|ref|XP_002089208.1| Hel25E [Drosophila yakuba]
 gi|190660682|gb|EDV57874.1| GG24297 [Drosophila erecta]
 gi|194175309|gb|EDW88920.1| Hel25E [Drosophila yakuba]
          Length = 424

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 99/394 (25%), Positives = 171/394 (43%), Gaps = 14/394 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 43  FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE           +                               G    + +       
Sbjct: 103 LEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGT 162

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM-GFIPYIQNITSLVPFTRQTL 181
             +++ TPGRIL      KL + +++  V+DE D+ML+       +Q I    P  +Q +
Sbjct: 163 PHIVVGTPGRILALIRNKKLNLKHLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHGKQVM 222

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT++ +++ V + F+Q+P  + V+  +               +  K   L +     
Sbjct: 223 MFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFEL--LD 280

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  +IF    +  V L   L +Q F    IH  + Q  R+     FK+   +++VA
Sbjct: 281 VLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVA 340

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAI 360
           ++L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ +
Sbjct: 341 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEV 400

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           +   +  +  L           E+ID++ +   R
Sbjct: 401 QDRFDVNISELP----------EEIDLSTYIEGR 424


>gi|156545118|ref|XP_001602070.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 821

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 133/436 (30%), Positives = 218/436 (50%), Gaps = 40/436 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + G   +++  +   GY   TPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L 
Sbjct: 394 SWKESGFPKEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLL 453

Query: 62  IL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +      E+     + P ++IL PTRELA Q+ +   K+G+   +   +++GG+  E Q
Sbjct: 454 WITSLPKIERTDEVDQGPWSIILAPTRELAQQIEEETNKFGQPLGIRTVVVVGGLSREEQ 513

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 514 GFRLRMGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 573

Query: 176 -------------------------FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
                                      RQT++F+ATM   +++++  +L+ P  + + + 
Sbjct: 574 VTNLKPDNEDAENEEKLLANYNSRKKYRQTVMFTATMPAAVERLARTYLRRPAVVYIGSI 633

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               E  E           ++  +       +  +   IIF NQKK    L   LEK G+
Sbjct: 634 GKPTERTEQIVHIMGEADKRRKLMEILSRGVEPPV---IIFVNQKKGADVLARGLEKLGY 690

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           + C +HG   Q  R   L++ K G+  ++VA+D+A RG+DI DV  V N+D+    E+Y 
Sbjct: 691 NACTLHGGKGQEQREYALASLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYT 750

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A +   K+D      +++ I      L   +S+  P L     AQH
Sbjct: 751 HRIGRTGRAGKAGVAISFCTKDDSHLFYDLKQTI------LASPISTCPPELLNHPEAQH 804

Query: 391 NHARKNNPIPQKSTGF 406
                     ++   F
Sbjct: 805 KPGTVVTKKRREEKIF 820


>gi|331015254|gb|EGH95310.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 484

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 210/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 97  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 156

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 157 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 216

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 217 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 276

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT T+++  +++ +  +P  +E+ + +  ++ +E    A       K    
Sbjct: 277 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYN 336

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 337 L---VTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 393

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 394 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 453

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 454 QLPAIEEKLGRKI 466


>gi|331008996|gb|EGH89052.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 482

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 210/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 95  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 154

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 155 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 214

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 215 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 274

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT T+++  +++ +  +P  +E+ + +  ++ +E    A       K    
Sbjct: 275 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYN 334

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 335 L---VTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 391

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 392 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 451

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 452 QLPAIEEKLGRKI 464


>gi|330950967|gb|EGH51227.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae Cit 7]
          Length = 483

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 210/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 96  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 155

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 156 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 215

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 216 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 275

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT T+++  +++ +  +P  +E+ + +  ++ +E    A       K    
Sbjct: 276 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYN 335

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 336 L---VTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 392

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 393 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 452

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 453 QLPAIEEKLGRKI 465


>gi|302188406|ref|ZP_07265079.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. syringae
           642]
          Length = 483

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 210/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 96  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 155

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 156 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 215

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 216 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 275

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT T+++  +++ +  +P  +E+ + +  ++ +E    A       K    
Sbjct: 276 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYN 335

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 336 L---VTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 392

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 393 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 452

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 453 QLPAIEEKLGRKI 465


>gi|301386366|ref|ZP_07234784.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tomato
           Max13]
 gi|302060652|ref|ZP_07252193.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tomato
           K40]
 gi|302133062|ref|ZP_07259052.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 484

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 210/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 97  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 156

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 157 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 216

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 217 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 276

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT T+++  +++ +  +P  +E+ + +  ++ +E    A       K    
Sbjct: 277 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYN 336

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 337 L---VTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 393

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 394 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 453

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 454 QLPAIEEKLGRKI 466


>gi|298485798|ref|ZP_07003877.1| ATP-dependent RNA helicase RhlB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159824|gb|EFI00866.1| ATP-dependent RNA helicase RhlB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 484

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 210/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 97  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 156

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 157 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 216

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 217 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 276

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT T+++  +++ +  +P  +E+ + +  ++ +E    A       K    
Sbjct: 277 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYN 336

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 337 L---VTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 393

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 394 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 453

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 454 QLPAIEEKLGRKI 466


>gi|289678220|ref|ZP_06499110.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. syringae
           FF5]
 gi|330975704|gb|EGH75770.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 483

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 210/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 96  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 155

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 156 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 215

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 216 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 275

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT T+++  +++ +  +P  +E+ + +  ++ +E    A       K    
Sbjct: 276 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYN 335

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 336 L---VTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 392

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 393 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 452

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 453 QLPAIEEKLGRKI 465


>gi|289628603|ref|ZP_06461557.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289647202|ref|ZP_06478545.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330867826|gb|EGH02535.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 482

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 210/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 95  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 154

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 155 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 214

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 215 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 274

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT T+++  +++ +  +P  +E+ + +  ++ +E    A       K    
Sbjct: 275 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYN 334

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 335 L---VTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 391

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 392 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 451

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 452 QLPAIEEKLGRKI 464


>gi|257487412|ref|ZP_05641453.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|320325825|gb|EFW81886.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327257|gb|EFW83271.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330879451|gb|EGH13600.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330988315|gb|EGH86418.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 482

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 210/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 95  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 154

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 155 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 214

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 215 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 274

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT T+++  +++ +  +P  +E+ + +  ++ +E    A       K    
Sbjct: 275 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYN 334

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 335 L---VTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 391

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 392 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 451

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 452 QLPAIEEKLGRKI 464


>gi|302918633|ref|XP_003052696.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256733636|gb|EEU46983.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 434

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 148/375 (39%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++ A+ D G+  P+ +Q   IP  L   D+   A++G GKTA FVL  L  
Sbjct: 52  FRDFLLKAELLRAIADCGFEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQ 111

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
           +E     V +                 + F KY       +           E    K  
Sbjct: 112 VEPVNGEVSVVVMCHTRELAYQIRDEYNRFSKYMPDIKTGVFYGGTPIKTDVETLKNKET 171

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++           ++   L +    ++ +    +        +Q++    P  +Q 
Sbjct: 172 CPHIIVGTPGRLKALVRDKALRLGSVRIFVLDECDKMLDQPDMRTDVQDVFRATPQQKQV 231

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT+++E++ +   F+QNP    V+  +         +     +  K   L +    
Sbjct: 232 MMFSATLSEEVKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIKLEEKEKNRKLNEL--L 289

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF         L   L +  F   A+H  + Q  R++    FKE   ++ V
Sbjct: 290 DDLQFNQVIIFVRSTVRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFKKRICV 349

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           A+D+  RG+DI  +    N+D+ N A +Y+HR+GR GR G  G A + V   +D + +  
Sbjct: 350 ATDVFGRGIDIERINLAINYDLSNDASSYLHRVGRAGRFGTKGLAISFVSTDQDQEVLKE 409

Query: 360 IEKLIEKKVDWLNGD 374
           IEK  E  +     +
Sbjct: 410 IEKRFEVALPEFPKE 424


>gi|253771018|gb|ACT35657.1| vasa-like protein [Haliotis asinina]
          Length = 763

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 135/387 (34%), Positives = 215/387 (55%), Gaps = 14/387 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + GL P  +  V  A Y KPTP+Q  +IP++    D+   AQTG+GKTA+F+LP LT
Sbjct: 308 SFDEAGLYPTFLKNVRKAKYEKPTPVQKYSIPIIAAGRDLMACAQTGSGKTAAFLLPTLT 367

Query: 62  ILEK------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            + K        + V+ P+ +I+ PTREL  Q+  +  K+ +   +   ++ GG     Q
Sbjct: 368 CMVKEGLTTSQFSEVQEPQAIIVAPTRELVVQIHSDARKFSRGTEVRPVVVYGGTSVGHQ 427

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---- 171
            +++ERGA V++ TPGR+LD   +GK+ +  ++ L++DEADRMLDMGF P I+ +     
Sbjct: 428 LREVERGAHVVVGTPGRLLDFIEKGKIGLGKVKFLILDEADRMLDMGFEPCIRKLVEQLG 487

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTL+FSAT   E+QK++ +FL +   + V         +E  F        ++
Sbjct: 488 MPPKTQRQTLMFSATFPTEIQKLAADFLNDYLFLTVGRVGGANTDVEQNFFEVDRLQKRE 547

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                    ++      ++F  QK+N   L   L + GF   +IHG+  QR R + L +F
Sbjct: 548 KLCSIL---TESGSDKTLVFVEQKRNADFLASYLSQSGFPTTSIHGDRLQREREEALRDF 604

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K GT  +++A+ +AARGLDIP+V HV N+D+P+  + Y+HRIGRTGR G  GKA +  + 
Sbjct: 605 KRGTAPILIATSVAARGLDIPEVKHVVNYDLPSSIDEYVHRIGRTGRCGNLGKATSFYSH 664

Query: 352 E-DIKHIDAIEKLIEKKVDWLNGDLSS 377
           + D   + ++ +++ +    +   LS 
Sbjct: 665 DSDSALVKSLVRILTEAHQIVPEWLSD 691


>gi|213967088|ref|ZP_03395237.1| atp dependent rna helicase [Pseudomonas syringae pv. tomato T1]
 gi|213927930|gb|EEB61476.1| atp dependent rna helicase [Pseudomonas syringae pv. tomato T1]
          Length = 486

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 210/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 99  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 158

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 159 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 218

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 219 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 278

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT T+++  +++ +  +P  +E+ + +  ++ +E    A       K    
Sbjct: 279 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYN 338

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 339 L---VTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 395

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 396 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 455

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 456 QLPAIEEKLGRKI 468


>gi|193606171|ref|XP_001946134.1| PREDICTED: ATP-dependent RNA helicase vasa, isoform A-like
           [Acyrthosiphon pisum]
          Length = 641

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 132/417 (31%), Positives = 218/417 (52%), Gaps = 16/417 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + GL   ++  + +  Y  PTPIQ   IP+++   D+   AQTG+GKTA+FVLP+L 
Sbjct: 223 SFKESGLCEVLLSNLTECNYGNPTPIQKYAIPIIMNGKDMIASAQTGSGKTAAFVLPILN 282

Query: 62  ILEKGR------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            L               P+ LIL PTRELA+Q++    K     ++    L GG     Q
Sbjct: 283 SLISEPSELVFDYNHCEPQCLILSPTRELASQISSFAFKLSNGTSIRCRALYGGTAVYHQ 342

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            +K+  G  +++ TPGR++D  NRG +  +++  +V+DEADRMLDMGF P IQ I S   
Sbjct: 343 REKILSGVHIIVATPGRLIDFVNRGLITFSSLRFIVLDEADRMLDMGFTPAIQCIFSDNT 402

Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 R TL+FSAT+  ++Q++++++L+             A            ++SKK
Sbjct: 403 MVSSAERSTLMFSATLPIDVQQIAKSYLKPDYISVAVGEVGGACKDVTQTFVEVNKFSKK 462

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L+  L ++ D  +  I+F  QK+    +   L +  +   +IHG+ +Q  R K L +F
Sbjct: 463 NELVALLNETNDC-QGTIVFVEQKRQADFIAAFLSELNYPTTSIHGDREQPEREKALRDF 521

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K   ++++VA+ +AARGLDI  V  V NFD+P   E Y+HRIGRTGR G  G+A +    
Sbjct: 522 KTKKMKVLVATAVAARGLDIMGVTTVVNFDLPKTIEEYVHRIGRTGRLGNSGRAVSFYDP 581

Query: 352 EDI-----KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           ++        ++ +++  +   ++L+     ++ PL + +  + N    +  I ++ 
Sbjct: 582 DNDSAMAPYLVNTLKRADQNIPEFLSKYSGEVHEPLNQFNDIRPNVTVTSEYIQEED 638


>gi|161486737|ref|YP_234164.2| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. syringae
           B728a]
          Length = 483

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 210/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 96  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 155

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 156 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 215

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 216 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 275

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT T+++  +++ +  +P  +E+ + +  ++ +E    A       K    
Sbjct: 276 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYN 335

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 336 L---VTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 392

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 393 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 452

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 453 QLPAIEEKLGRKI 465


>gi|17537549|ref|NP_496973.1| hypothetical protein Y54G11A.3 [Caenorhabditis elegans]
 gi|4008449|emb|CAA22456.1| C. elegans protein Y54G11A.3, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 504

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 193/386 (50%), Gaps = 13/386 (3%)

Query: 2   DFAD-LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
            F    G +  ++  +   G+ KP+PIQ +  PL+L   D  G++QTG+GKT +F+LP  
Sbjct: 84  SFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPAL 143

Query: 59  ------MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                 +    +    +   P  L+L PTRELA Q+    +KY  N   +V L  GG   
Sbjct: 144 LHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKYSYNGYKSVCLY-GGGSR 202

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q +    G +++I TPGR+ D  N G + + ++  +V+DEADRMLDMGF   I+ I  
Sbjct: 203 PEQVEACRGGVEIVIATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEVAIRRILF 262

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +   R   L SAT  + ++K+++ + +        +   T+      F       S+  
Sbjct: 263 EIRPDRLVALTSATWPEGVRKLTDKYTKEAVMAVNGSLDLTSCKSVTQFFEFVPHDSRFL 322

Query: 233 ALLQQLLQ---SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            + + +     +       IIF   K    +L      +G +   +HG   Q  R   L+
Sbjct: 323 RVCEIVNFLTAAHGQNYKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLN 382

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
             + G +Q++VA+DLA+RG+D+PD+ HV N+D P   E Y+HR+GRTGRAGR G+A + +
Sbjct: 383 MLRSGEVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFL 442

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDL 375
              D  + + + +++EK    +   L
Sbjct: 443 WWNDRSNFEGLIQILEKSEQEVPDQL 468


>gi|63255030|gb|AAY36126.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
          Length = 485

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 210/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 98  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 157

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 158 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 217

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 218 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 277

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT T+++  +++ +  +P  +E+ + +  ++ +E    A       K    
Sbjct: 278 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYN 337

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 338 L---VTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 394

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 395 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 454

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 455 QLPAIEEKLGRKI 467


>gi|162533080|ref|NP_791083.3| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|32363284|sp|Q887N8|RHLB_PSESM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|28851702|gb|AAO54778.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 397

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 210/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 10  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 69

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 70  LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 129

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 130 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 189

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT T+++  +++ +  +P  +E+ + +  ++ +E    A       K    
Sbjct: 190 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYN 249

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 250 L---VTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 307 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 366

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 367 QLPAIEEKLGRKI 379


>gi|219123243|ref|XP_002181938.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406539|gb|EEC46478.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 433

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 130/395 (32%), Positives = 203/395 (51%), Gaps = 6/395 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG    +  A     +   T IQ   +P   +  D+ G+A+TG+GKT +F LP+L 
Sbjct: 40  SFKSLGACETLQEACDRLEWKTATRIQASVLPEAFEGRDIIGLAETGSGKTGAFCLPILQ 99

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   +      LIL PTRELA Q+    +  G+    T   ++GG+   +Q   L R
Sbjct: 100 GLLRKPVKGTA--ALILTPTRELAFQILQVVQGLGQAMGATAVCVVGGVDRTSQAIALGR 157

Query: 122 GADVLICTPGRI-LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V+I TPGR+     +     +N +  LV+DEADRML M F   +  I   +P  RQT
Sbjct: 158 NPHVVIATPGRLLDHLKDTKGFNLNKVRYLVLDEADRMLSMDFEEELHQILDNMPEQRQT 217

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATMT ++ K+    L++P +++V+T   T + +     +     +K        L 
Sbjct: 218 LLFSATMTTQVAKLERASLKDPVKVQVSTKFQTPKQLLQ---SYLFIPAKYKDCYLTYLI 274

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ ++F     NV  L   L   GF    +HG +DQ  R+  L  F  G   +++
Sbjct: 275 NEHAGQSILVFGATCNNVQRLALMLRNLGFPAVCLHGQMDQSKRLGALQKFSSGDRTILL 334

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A+RGLD+P V  V NFD+P   + YIHR+GRT RAG+ G+A  +V + D++    +
Sbjct: 335 CTDVASRGLDLPQVDLVINFDLPGHGKEYIHRVGRTARAGKSGRAIAMVTQYDVEVYQRL 394

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           E L+ KK+D    D  ++   LE++  AQ    R+
Sbjct: 395 EALLGKKLDEWKTDEKTVLVLLERVSDAQRMATRE 429


>gi|68070111|ref|XP_676967.1| ATP-dependent RNA helicase [Plasmodium berghei strain ANKA]
 gi|56496896|emb|CAH98719.1| ATP-dependent RNA helicase, putative [Plasmodium berghei]
          Length = 715

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 124/423 (29%), Positives = 200/423 (47%), Gaps = 47/423 (11%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL     ++  + +  + +PT IQ  T P+ L   D+ G+A+TG+GKT +FVLP L 
Sbjct: 290 KFSDLDFHESILNYLNEK-FKEPTAIQKITWPIALSGKDLIGVAETGSGKTLAFVLPCLM 348

Query: 62  ILEKGRARVR-----------------------------------------MPRTLILEP 80
            + K + +                                               LIL P
Sbjct: 349 HILKHKQKEMEENGVEHIKNNEEKLSENNNNDNNYDPDFEKEFQNDDSENRKTYGLILLP 408

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TREL  QV +  + +    NL    + GG+P   Q   +++GAD+++ TPGR+LD+   G
Sbjct: 409 TRELCMQVLNEIKNFESELNLKAVAVYGGVPKYFQINNIKKGADIIVATPGRLLDYLENG 468

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200
            + +     +VIDEADR+LDMGF   ++ I + V   +Q L  +AT  ++++K++ +F  
Sbjct: 469 IINLLRCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFLTATWPEQVRKLAYDFCS 528

Query: 201 NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVN 260
                     S              +        L   L+        +IFC+ K+N  N
Sbjct: 529 FDPVKIQIGKSELTANKNIEQQVIVSSSIDLKKKLLDWLKDNYENNKILIFCDTKRNCDN 588

Query: 261 LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNF 320
           LC  L    ++  +IHG+  QR R +IL+N+K     ++VA+D+A+RGLDI ++  V N+
Sbjct: 589 LCKELRYHQYNSLSIHGDKQQRERDRILNNYKNDRCNILVATDVASRGLDIKNISIVINY 648

Query: 321 DVPNRAENYIHRIGRTGRAGRHGKAFTL-----VAKEDIKHIDAIEKLIEKKVDWLNGDL 375
           D+PN  E+YIHRIGRTGRAG  G++           +  +    + KL+ K    +  +L
Sbjct: 649 DIPNTIEDYIHRIGRTGRAGNKGQSILFFPYDYYVPQKQRFAKDLIKLLNKTNQQVPKEL 708

Query: 376 SSL 378
             +
Sbjct: 709 REI 711


>gi|88860789|ref|ZP_01135426.1| putative ATP-dependent RNA helicase DbpA [Pseudoalteromonas
           tunicata D2]
 gi|88817384|gb|EAR27202.1| putative ATP-dependent RNA helicase DbpA [Pseudoalteromonas
           tunicata D2]
          Length = 460

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 146/452 (32%), Positives = 236/452 (52%), Gaps = 21/452 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P ++  +    Y   TPIQ +++P +L   DV   A+TG+GKTA+F L +L  
Sbjct: 6   FSSLKLQPALLENLTSLEYTSMTPIQAQSLPHILSGKDVIAQAKTGSGKTAAFALGLLEN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+  + RV+    L+L PTRELA QVA    K  +       L +  G+P   Q   LE 
Sbjct: 66  LDVRKYRVQ---ALVLCPTRELADQVAQEIRKLARGIPNVKVLALCGGVPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI DH +R  L ++++  LV+DEADRMLDMGF   +  I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIEDHLSRRTLDLSHVNTLVLDEADRMLDMGFSAALDAIIDQTPRDRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT  +++Q+++   +++P ++EV +  +     ++       + +K+     +LL  
Sbjct: 183 FFSATFPEKIQQIASRTMRDPVKVEVESSHNNVNIRQY---FYKVEQNKQRTTALRLLLL 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + ++FCN +     +   L   GFSV A+HG ++QR R + L  F   +I ++VA
Sbjct: 240 KHEPNSCVVFCNTRVETQAVADELAVSGFSVLALHGELEQRERDQTLVRFANKSISILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++  V N+ +    E ++HRIGRTGRAG  G A +L    +   + A+ 
Sbjct: 300 TDVAARGLDINELDMVINYHITQDPEVHVHRIGRTGRAGSKGTAHSLFTDNESYRVAAVS 359

Query: 362 KLIEKKVDWLNGDLSSLNP--PLEKID------IAQHNHARKNNPIPQKSTGFDRRKKNY 413
           +  +K+ +     LS+L P   L+K+         Q +  +K    P    G    K   
Sbjct: 360 EYFDKQFE-----LSALPPFTLLDKVPEKPLMVTLQIDGGKKQKVRPGDILGALTSKDGI 414

Query: 414 SSQK-SHIPLKESEKISKLQQDIQENDADSLG 444
           + ++   I + E+     + +D  +     LG
Sbjct: 415 AGKQVGKITVLENFAYVAVARDAAKPALRKLG 446


>gi|82915130|ref|XP_728973.1| DEAD/DEAH box helicase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485712|gb|EAA20538.1| DEAD/DEAH box helicase, putative [Plasmodium yoelii yoelii]
          Length = 517

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 117/371 (31%), Positives = 195/371 (52%), Gaps = 8/371 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L +  +V+ ++ + G+ KPT IQ K +P+V Q+ D+ G+++TG+GKTA F++P+L 
Sbjct: 109 SFEQLNICEEVLQSIKELGWEKPTLIQQKVLPIVFQKRDIIGLSETGSGKTACFIIPILQ 168

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN-KKLE 120
            L+    + +    LI+ PTREL  Q+A N +  G N  + +  + GG+    Q+    +
Sbjct: 169 ELKI---KKQSFFALIISPTRELCIQIAQNAQALGSNLLINICTIFGGVDIVTQSLNLAK 225

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      +    N     + N++ L+ DEAD++L + F   I  +  ++P  R T
Sbjct: 226 KPNIIIGTPGRILDHLNNTKGFNLKNLKYLIFDEADKLLSLDFESSINKLLLILPKNRIT 285

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT  + K+ +  L+NP +I+V+   ST +T+   ++       K        L 
Sbjct: 286 FLFSATMTKSVSKLKKASLKNPIQIQVSNKYSTVKTLIETYIFLPL---KYKYTYLCSLC 342

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T KN IIF N       L       G     +HG + Q  R+  L+ FK     +++
Sbjct: 343 FYFTNKNIIIFSNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNLFKTNKYNILI 402

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++ + ARGLD+ ++  V NFD+    + YIHR+GRT RAG+ GK+ T V + D++    I
Sbjct: 403 STQVGARGLDLKNIKIVINFDLC-SCKEYIHRVGRTARAGKTGKSITFVTQYDVETFLTI 461

Query: 361 EKLIEKKVDWL 371
           EK + KK+D  
Sbjct: 462 EKQLNKKIDKF 472


>gi|237806841|ref|YP_002891281.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237499102|gb|ACQ91695.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 469

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 136/418 (32%), Positives = 222/418 (53%), Gaps = 15/418 (3%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
            L L P ++  +   GY + TPIQ +++P VLQ  DV   A+TG+GKTA+F L +L  L+
Sbjct: 17  QLALQPALLENLTALGYSEMTPIQAQSLPAVLQGKDVLAQAKTGSGKTAAFALGLLQGLD 76

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLERGA 123
               +    + L+L PTRELA QVA    +  +       L +  G+P   Q   LE+GA
Sbjct: 77  V---KSLNVQGLVLCPTRELADQVAGEIRRLARLIPNVKVLTLCGGMPIGPQFSSLEQGA 133

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
            +++ TPGR+  H ++  L +  ++  V+DEADRMLDMGF   ++ I  + P  RQTLLF
Sbjct: 134 HIVVGTPGRVQKHLDKESLSLAALKTWVLDEADRMLDMGFADAMREIAKVCPRQRQTLLF 193

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT  +++Q++S  F +NP  + V +  S  +  +  F     +           L    
Sbjct: 194 SATYPEDIQRLSTEFQRNPLSVRVESTHSAVQIEQRFFELPNQEAK---FPALLKLLQHY 250

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             ++ +IFCN K     +  +L  QG+S  A++G+++QR R +++  F   +  ++VA+D
Sbjct: 251 QPRSTVIFCNMKHQTQQVADALSAQGYSALALNGDLEQRERDQVVVRFSNQSCAILVATD 310

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARGLDI ++  V N+D+    E ++HRIGRTGRAG+ G A TL        +  IE  
Sbjct: 311 VAARGLDIKELQAVVNYDLTPDPEIHVHRIGRTGRAGQTGLALTLTTASQTNRVLQIEDY 370

Query: 364 IEKK-----VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            + +     +D L  +  ++ P +  + +   +  RK+   P    G   ++  ++ Q
Sbjct: 371 QQSQAVWGNLDELKKNPDNMKPEMVTLCL---DGGRKSKVRPGDILGALTKEAGFNGQ 425


>gi|196001667|ref|XP_002110701.1| hypothetical protein TRIADDRAFT_50105 [Trichoplax adhaerens]
 gi|190586652|gb|EDV26705.1| hypothetical protein TRIADDRAFT_50105 [Trichoplax adhaerens]
          Length = 722

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 142/441 (32%), Positives = 229/441 (51%), Gaps = 48/441 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +++  LS +++  + D  Y +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L  
Sbjct: 295 WSESELSKELLDIISDLKYNEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 354

Query: 63  LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      VR       P  +I+ PTRELA Q+ +   ++GK   +    +IGG+  E Q 
Sbjct: 355 ITSLPKIVREADIDQGPYAIIMAPTRELAQQIEEEAARFGKPVGIRTVAVIGGLNREEQG 414

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--- 173
             L +G +++I TPGR+LD  +   L++N    +V+DEADRM+DMGF P +Q+I      
Sbjct: 415 FLLRQGCEIVIATPGRLLDVLDNSYLVLNQCTYVVLDEADRMIDMGFEPDVQSILEYLPV 474

Query: 174 ----------------------VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
                                     RQT++F+ATM   +++++ ++L+ P  + + +  
Sbjct: 475 SNQKPDTDDAQDPNKIRLKLGDKNRYRQTVMFTATMPPPVERLARSYLRRPAVVYIGSAG 534

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
              E++E        +  K+  L+  L   +  +   IIF NQKK    L  SLEK G+ 
Sbjct: 535 KPTESVEQIVHMMKNENDKRKKLVTLLKTLESPI---IIFVNQKKGCDVLAKSLEKIGYR 591

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
              +HG   Q  R   L+  K G+  ++VA+D+A RG+DI DV +V N+D+    E+Y H
Sbjct: 592 SATLHGGKSQDQRELALNGLKSGSKDILVATDVAGRGIDIRDVQYVINYDMAKSIESYTH 651

Query: 332 RIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
           RIGRTGRAG+ G A T +  +D      +++L+             L+ P+    I   N
Sbjct: 652 RIGRTGRAGKTGTAITFLTNDDSGVFYDLKQLL-------------LSSPISTCPIELSN 698

Query: 392 HARKNNPIPQKSTGFDRRKKN 412
           H   N+  P K     RR++ 
Sbjct: 699 HPDANSK-PGKIMTKKRREEK 718


>gi|170757010|ref|YP_001781328.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum B1 str.
           Okra]
 gi|169122222|gb|ACA46058.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum B1 str. Okra]
          Length = 421

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 115/421 (27%), Positives = 216/421 (51%), Gaps = 17/421 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L+PK+V  +       PT IQ K IPL ++  D+ G ++TGTGKT +++LP+L 
Sbjct: 4   SFDTLNLNPKLVQGLKKLNINIPTEIQAKAIPLAMENKDIIGQSETGTGKTLAYLLPILE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNKKL 119
            +   +  ++     IL PT ELA Q+ +  +    N N+      +IG    + Q +KL
Sbjct: 64  KITTEKREMQAI---ILAPTHELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +++ +PGRIL+   + K+  + ++ +VIDE D++LD   +  ++ +       RQ
Sbjct: 121 KEKPHIIVGSPGRILELIKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT+T+    ++++ +++ + ++V   ++  E I+H ++       ++   + + L
Sbjct: 181 LMLFSATITESTLNIAKDLMKDSEVVKVKEKNTVNENIKHLYITGEH---RERIEILRKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    K  I+F N+ + +      L+        I+G  ++  R K L +F+ G +Q++
Sbjct: 238 IAATNPKRAIVFINRNEEIELTTLKLQYHKIKAYGIYGAAEKEQRKKALEDFRSGKVQIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V+SDL+ARGLD+ D+ H+FN D+P   + Y+HR+GRTGRA + G A +++ +++   I  
Sbjct: 298 VSSDLSARGLDVKDITHIFNLDLPENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRK 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
            EK     ++            + K  +      R + P  +  +    R  N   + S 
Sbjct: 358 YEKEFNINIEE---------KKIYKGTLISSKGERSSQPKSKNRSTSVHRDNNKKKRSSS 408

Query: 420 I 420
           I
Sbjct: 409 I 409


>gi|321466548|gb|EFX77543.1| hypothetical protein DAPPUDRAFT_321368 [Daphnia pulex]
          Length = 581

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 83/452 (18%), Positives = 164/452 (36%), Gaps = 23/452 (5%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F +L     +  +++  +   GY  PTPIQ++ IPL+L++ ++   A TG+GKTA+F++
Sbjct: 133 TFEELAQQFSIKEELIKNIQTRGYEVPTPIQMQAIPLMLKKREILACAPTGSGKTAAFLV 192

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           P++  L   + +      +                   G      V   +G    +   K
Sbjct: 193 PIIHCLGAPQKKGFRAVIVSPTRELANQTHRECVKLTEGIGLRCHVIDNVGKATQKFGPK 252

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             +R   ++      +         +       +I +    L        ++    +   
Sbjct: 253 SSQRFDILITTPNRLVFLLSQEPPAISLKNVEWLIVDESDKLFEEGRQGFRDQLGAIYRA 312

Query: 178 RQTLLFSATMTDELQKVSENFLQN---PKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
             +                           + +      + + +      +A       +
Sbjct: 313 CDSNQIRRAFFSATFAFDVQEWCKLNLDNVVMLTIGQKNSASEKVEQQLIFAGSEGGKLM 372

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
             + L  +      ++F   K+    L   L   G +V  IH    Q  R  ++ +F+ G
Sbjct: 373 AFRNLIVEGLNPPVLVFVQTKERAKELYTELVYDGINVDVIHAERSQLQRDNVVKSFRSG 432

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I +++ ++L  RG+D   V  V N+D P  A +YIHRIGRTGRAGR GKA T   + D 
Sbjct: 433 QIWVLICTELMGRGIDFKGVNLVVNYDFPPSAISYIHRIGRTGRAGRPGKAITFFTESDA 492

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
            ++  I  ++      +   +  +         ++ +  +    +P       R+  +  
Sbjct: 493 VYLRKIATVMRNSGCEVPEYMLQMKK------TSRSDAKKMARKVPT------RKSISTE 540

Query: 415 SQKSHIPLKESEKI----SKLQQDIQENDADS 442
                I  K+ E+I     K +Q+ Q+  +  
Sbjct: 541 PLPDKIKRKKRERIIANVRKNKQNGQQGPSSK 572


>gi|313358754|gb|ADR51551.1| vasa-like protein variant 1 [Scylla paramamosain]
 gi|313358756|gb|ADR51552.1| vasa-like protein variant 2 [Scylla paramamosain]
 gi|313358758|gb|ADR51553.1| vasa-like protein variant 3 [Scylla paramamosain]
          Length = 632

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 120/388 (30%), Positives = 203/388 (52%), Gaps = 13/388 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L   ++  V  A + +PTPIQ  +IP+++ + D+   AQTG+GKTA+F+LPML 
Sbjct: 195 TFQEMNLRNVLLENVSKAEFPRPTPIQKYSIPILMNQRDLMACAQTGSGKTAAFLLPMLH 254

Query: 62  IL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +            V  P  L+L PTRELA Q+     K+     +  + + GG+    Q
Sbjct: 255 YILENDIESHSFEDVAQPVGLVLAPTRELAIQIFQEARKFSLQTVIKNSCIYGGVATNFQ 314

Query: 116 NKKLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
            ++++     ++I TPG++L     GK+ + +++ LV DEADRMLD+GFI  ++    + 
Sbjct: 315 LRRMKEQGCHIIIATPGKLLFFLGMGKISLKSLKFLVFDEADRMLDLGFIDDMEKLVAHP 374

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  R T++FSAT  +E+Q+ +  FL N   +      +  + +    +   A++ K
Sbjct: 375 DMPPKGERLTMMFSATFPEEVQRCALRFLDNYLFLVAGQVGAANKDV-CQTIVQVAKFEK 433

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L + L   +D+ +  ++F   K+    +   L   GF    +HG   Q  R + LS 
Sbjct: 434 RDKLAEYLRSFEDSQEKVLVFVEMKRQADFVGTYLSTNGFRSVTLHGGRYQEQREEALSA 493

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+    +++VA+ +AARGLDI  VG+V N+D+P  A+ Y+HRIGRTGR G  G+A +   
Sbjct: 494 FRSNQYRVLVATSVAARGLDIRGVGYVINYDLPKSADEYVHRIGRTGRVGNRGQAVSFYD 553

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSS 377
            E D+     + +++      +   L S
Sbjct: 554 PEQDLNLAKDLVRILTDAEQEVPSWLRS 581


>gi|58336753|ref|YP_193338.1| RNA helicase [Lactobacillus acidophilus NCFM]
 gi|227903314|ref|ZP_04021119.1| ATP-dependent RNA helicase [Lactobacillus acidophilus ATCC 4796]
 gi|58254070|gb|AAV42307.1| RNA helicase [Lactobacillus acidophilus NCFM]
 gi|227868943|gb|EEJ76364.1| ATP-dependent RNA helicase [Lactobacillus acidophilus ATCC 4796]
          Length = 453

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 133/440 (30%), Positives = 208/440 (47%), Gaps = 13/440 (2%)

Query: 1   MD--FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           M+  F D  ++P +   +    +VKPT +Q K IP +L    V   A TG+GKT ++++P
Sbjct: 1   MNNIFEDSRINPALQEGLKKINFVKPTKVQEKVIPAMLSDLSVVVQAATGSGKTHAYLVP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +   +++    V+   TL      +   QVA         +     L  G        K 
Sbjct: 61  IFNEIDEAAHYVQAIVTLPSRELADQLYQVARKLRDAAGMHFSIAHLAGGTDRERQLEKY 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 ++I TPGR+LD   +    ++ ++  VIDEAD  LDMGF+  I  + S +P   
Sbjct: 121 QNNTPQLVIATPGRLLDFVQKKVFAVDQVKTFVIDEADMTLDMGFLSDIDQVASKMPKDV 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q   FSAT+  +L      ++ +P +I ++ PS  A TI           SK    +   
Sbjct: 181 QIAAFSATIPVKLSNFLRKYMAHPDQIVIDNPSIIAPTI---KNDLIDIGSKDRKNVLYK 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +       ++F N K+ V  L   L+ QG  V  IHG + +R R + L   ++G  Q 
Sbjct: 238 VLTMGQPYLALVFANTKQKVDELTKFLQDQGLKVAKIHGGVTERERKRTLRQVEQGQYQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARGLDI  V  V N+++P   E  IHRIGRTGR G  G A TL+ +E++  I+
Sbjct: 298 VVASDLAARGLDIDGVSLVVNYEIPRDIEFVIHRIGRTGRNGLSGHAVTLIREEEMNRIE 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF-----DRRKKNY 413
            +EK +    D++      L P   K   ++ N   KN  +  K  G+      +RK  Y
Sbjct: 358 DLEK-MGVHFDFVEIKNGELVP--RKHYRSRENRQGKNRKLDTKLVGYVKKEKRKRKPGY 414

Query: 414 SSQKSHIPLKESEKISKLQQ 433
             +      +++ +  KL+Q
Sbjct: 415 KKKIKRAIQEDNRQKRKLEQ 434


>gi|316970810|gb|EFV54682.1| DEAD-box helicase 1 [Trichinella spiralis]
          Length = 714

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 90/375 (24%), Positives = 165/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ +++D G+  P+ +Q + IP  +   DV   A++G GKTA FV+  L  
Sbjct: 55  FRDFLLKPELLRSIVDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVIATLQQ 114

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L      V               ++  + F KY     + V      +  +    +    
Sbjct: 115 LNAVEGEVHCLVMCHTRELAFQISKEYERFCKYMPKVKVAVFFGGTNVKKDEDMLRNNTP 174

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    NR   L +    ++ +    + D+     +Q I  + P  +Q ++
Sbjct: 175 HIVVGTPGRLLALARNRVLSLKSIKYFILDECDRMLGDLDMRRDVQEIYKMTPREKQVMM 234

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ EL+ V + F+Q+P  + V+  +         +     +  K   L +      
Sbjct: 235 FSATLSKELRPVCKKFMQDPMEVYVDDEAKLTLHGLQQYYVKLKETEKNKKLFEL--LDV 292

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH ++ Q  R+     F++   +++VA+
Sbjct: 293 LEFNQVVIFVRSVQRCMALNELLTEQNFPSIAIHRSMAQEERLSRYQQFRDFHKRILVAT 352

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 353 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDESDAKVLNDVQ 412

Query: 362 KLIEKKVDWLNGDLS 376
              +  +  L  +L 
Sbjct: 413 DRFDVSIGELPDELD 427


>gi|330899540|gb|EGH30959.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 483

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 210/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 96  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 155

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 156 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDRQLKQ 215

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 216 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 275

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT T+++  +++ +  +P  +E+ + +  ++ +E    A       K    
Sbjct: 276 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYN 335

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 336 L---VTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 392

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 393 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 452

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 453 QLPAIEEKLGRKI 465


>gi|291613137|ref|YP_003523294.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291583249|gb|ADE10907.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 475

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 133/405 (32%), Positives = 201/405 (49%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LSP ++  +    Y   TPIQ +++P+ L  +D+   A+TG+GKTA+F LP+LT 
Sbjct: 20  FNELPLSPALLANLQQLEYRTMTPIQAESLPITLAGNDLIAQAKTGSGKTAAFALPLLTN 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKLER 121
           L     R    + ++L PTRELA QV     +  +  +    L + G      Q   LE 
Sbjct: 80  L---NPRRFAVQAMVLCPTRELADQVTQELRRLARFADNIKILSLVGGSTMRPQRDSLEH 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  RG L ++ +  LV+DEADRMLDMGF   I  +    P  RQT+
Sbjct: 137 GAHIVVGTPGRIMDHLERGSLKLDALNTLVLDEADRMLDMGFYDDIAFVVKHCPAQRQTM 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + ++++ F     R                    Y    ++       L  
Sbjct: 197 LFSATYPEGIARLAQKF----MRKPQEVKLPEQHEGSKIRQRFYEVKHEERLQAVATLLK 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FCN K+   +L   L  +G     ++G+++QR R ++L  F   +  ++VA
Sbjct: 253 HYRPVSTLAFCNTKQQCRDLLDVLHAEGIHALTLNGDMEQRERDQVLIQFANRSCSVLVA 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E +IHRIGRTGRA   G A +L +  D+  I  I 
Sbjct: 313 TDVAARGLDIAQLEAVINVDVTPDPEIHIHRIGRTGRADAEGWALSLASPADMHRISNIA 372

Query: 362 KLIEKKVDW------LNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           K++  + +W         +   L PP+  + I      RK    P
Sbjct: 373 KMVGSEPEWHTLESVKRANDKPLIPPMVTLQIL---GGRKEKIRP 414


>gi|237799853|ref|ZP_04588314.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022708|gb|EGI02765.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 484

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 209/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 97  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 156

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 157 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 216

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 217 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 276

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT T+++  +++ +   P  +E+ + +  ++ +E    A       K    
Sbjct: 277 GERQTLLFSATFTEDVMNLAKQWTTEPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYN 336

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 337 L---VTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 393

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 394 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 453

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 454 QLPAIEEKLGRKI 466


>gi|303271399|ref|XP_003055061.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463035|gb|EEH60313.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 733

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 126/414 (30%), Positives = 199/414 (48%), Gaps = 34/414 (8%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL---- 63
           L  K++ A+   GY KP+PIQ+ +IP+ L + DV GIA+TG+GKT +FV+PML  +    
Sbjct: 304 LPEKILRAIQKVGYAKPSPIQMASIPIGLLKRDVIGIAETGSGKTCAFVVPMLAYIMELP 363

Query: 64  -EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                     P  L++ PTRELA Q+ +   K+    N  V  ++GG   E Q  KL RG
Sbjct: 364 VMTDEVAAHGPYALVMAPTRELAQQIEEETTKFAHFLNYRVTSVVGGQSIEDQGFKLRRG 423

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +++I TPGR++D   R   ++     +V+DEADRM+DMGF P + ++   +       +
Sbjct: 424 CEIVIGTPGRVIDVLERRYTVLQQCNYIVLDEADRMIDMGFEPQVMSVMDSMSADNLKPI 483

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTA----------------------ETIEHC 220
             A   D     +       +   + + +                         +T +  
Sbjct: 484 DEAETIDAGGLEAGAAGTRYRMTYMFSATMPPSVERLARKYLRNPAVVNIGSAGKTSDLI 543

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
                           +L+ S+      I+F N K+ V ++     KQG+SV +IHG   
Sbjct: 544 KQVVMWMTRGAKETQLELVLSRYPDTQAIVFVNTKRAVDHVQSLCVKQGYSVASIHGGKS 603

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q  R   L  FK G   ++VA+D+A RG+D+ D+  V N+++P   ENY HRIGRTGRAG
Sbjct: 604 QDQREDSLKGFKAGEYDILVATDVAGRGIDVKDIDLVVNYEMPLVIENYTHRIGRTGRAG 663

Query: 341 RHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           R G A + +  ED   +  +++L       L    +++ P L + + A+    R
Sbjct: 664 RQGTAVSFITSEDTDVMYDLKEL-------LTNSGNAVPPELARHEAAKVKPQR 710


>gi|198433176|ref|XP_002130371.1| PREDICTED: similar to ATP-dependent RNA helicase [Ciona
           intestinalis]
          Length = 816

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 117/368 (31%), Positives = 203/368 (55%), Gaps = 2/368 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   V+  GY  PTPIQ K IPL+L   DV  +A+TG+GKTA+F++PM   
Sbjct: 70  FQSMGLSHSVFKGVIRKGYKVPTPIQRKCIPLILSDKDVVAMARTGSGKTAAFLIPMFEK 129

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+ G       R L+L PTRELA Q     ++ G+  +L  A ++GG   + Q   +   
Sbjct: 130 LQ-GAQSGAGARALLLSPTRELALQTLKFVKELGRFTSLRTACILGGDSMDEQFSAMHEN 188

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV I TPGR++      +L ++NI  +V DEADR+ ++GF   +  +   +P  RQTLL
Sbjct: 189 PDVTIATPGRLMHVLIEMELRLSNIHYVVFDEADRLFELGFQEQLHEVLHRLPDDRQTLL 248

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +L + ++  L +P  + ++  S  ++ +         +  K  AL+  L    
Sbjct: 249 FSATLPKQLVEFAKAGLNDPTLVRLDLDSKLSDQL-KLAFLHLREDDKLPALIHLLRNVF 307

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  ++F + K +V  +   L+    +   ++ ++D  +R   ++ F+     +++ +
Sbjct: 308 KETEQTVVFVSTKHHVEFVKDVLKLFSINCSYVYSSLDHTARKINIAKFRNKKTMVLIVT 367

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIP + +V NF  P +++ ++HR+GR  RAGR G A++LV  E++ ++  +  
Sbjct: 368 DVAARGLDIPMLDNVINFSFPAKSKLFVHRVGRVARAGRTGTAYSLVCPEELAYVIDLHL 427

Query: 363 LIEKKVDW 370
            + + +++
Sbjct: 428 FLGRPLNF 435


>gi|169624724|ref|XP_001805767.1| hypothetical protein SNOG_15623 [Phaeosphaeria nodorum SN15]
 gi|118577978|sp|Q0TXZ2|SUB2_PHANO RecName: Full=ATP-dependent RNA helicase SUB2
 gi|111055878|gb|EAT76998.1| hypothetical protein SNOG_15623 [Phaeosphaeria nodorum SN15]
          Length = 438

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 90/377 (23%), Positives = 155/377 (41%), Gaps = 7/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  ++V A+ D G+  P+ +Q  TIP  +  +DV   A++G GKTA FVL  L  
Sbjct: 54  FRDFLLKDELVRAITDCGFEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQ 113

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN----KK 118
           +++          ++            +         ++ V +  GG P          K
Sbjct: 114 MDEKPEPGVASILVMCHTRELAYQIRNEYNRFAKFLPDVKVGVFYGGTPVAKDIELLSNK 173

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 ++           +R   L N    ++ +    +        +Q I    P  +
Sbjct: 174 DTHPHIIVGTPGRINALVRDRHLRLANLKHFVLDECDKMLDQPDMRNDVQAIFRATPAHK 233

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT++ E++ V + F+QNP  I V+            F     +  K        
Sbjct: 234 QVMMFSATLSKEIRAVCKKFMQNPLEIYVDDEKKLTLHGLQQFYVKLDEREKNR--KLND 291

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L         IIF         L   L +  F   A+H  I Q  R+K    FKE   ++
Sbjct: 292 LLDNLEFNQVIIFVRSTLRCTELDKLLRECNFPSTAVHSGIGQEERIKRYKEFKEFQTRI 351

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHI 357
            V++D+  RG+D+  +    N+D+P++A+ Y+HR+GR GR G  G + + V +++D   +
Sbjct: 352 CVSTDIFGRGIDVERINVAINYDMPDKADAYLHRVGRAGRFGTKGLSISFVSSQDDEAVL 411

Query: 358 DAIEKLIEKKVDWLNGD 374
            AIE+    ++     D
Sbjct: 412 KAIEERFAAEIPEFPED 428


>gi|89902343|ref|YP_524814.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
 gi|89347080|gb|ABD71283.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
          Length = 421

 Score =  141 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 138/365 (37%), Positives = 202/365 (55%), Gaps = 6/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGLSP ++ A+ D  +  PTPIQ   +   LQ  D+   AQTG+GKTA+F LP+L
Sbjct: 1   MPFSSLGLSPALLRAISDQAWSAPTPIQAVAMGPALQGRDLLASAQTGSGKTAAFALPLL 60

Query: 61  TILEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNK 117
              E    +  R  R LIL PTREL+ QV +     G++      V+++ GG+    Q  
Sbjct: 61  QQFEAAVPQSPRRLRALILVPTRELSTQVGEEIRFLGQHLPRALKVSIVFGGVSINPQML 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  GAD+++ TPGR+LD  +   L ++ +  LV+DEADR+LD+GF   +  I +L+P  
Sbjct: 121 RLRGGADIVVATPGRLLDLIDHNALSLSGVATLVLDEADRLLDLGFAEELNRILALLPVQ 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ L FSAT    +Q +++  L++P RIEV     T   IE   +   A    +     +
Sbjct: 181 RQNLFFSATFPPAVQTLAQVLLRDPVRIEVAPEPQTQPDIEQRVIEVDAAQRTQL---LR 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L +Q      ++F   K     +   L K   +    HG + Q  R ++L++FK   ++
Sbjct: 238 HLMAQHHWSRVLVFVATKHAAEMVADKLRKARINAEPFHGELSQGKRTQVLADFKASRLK 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  +  V NFD+P  A +YIHRIGRTGRAG  G A + V+     H 
Sbjct: 298 VVVATDVAARGLDIAQLPVVVNFDLPRSALDYIHRIGRTGRAGEKGVALSFVSAATDAHW 357

Query: 358 DAIEK 362
             IEK
Sbjct: 358 RLIEK 362


>gi|327282682|ref|XP_003226071.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Anolis
           carolinensis]
          Length = 840

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 127/366 (34%), Positives = 198/366 (54%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   V+  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F++PM   
Sbjct: 65  FQSMGLSYPVFKGVMKKGYKIPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFEK 124

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ G+   L  AL++GG   E Q   L   
Sbjct: 125 LKAHSAKTGA-RALILSPTRELALQTLKFTKELGRFAGLKTALILGGDKMEDQFAALHEN 183

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++      KL ++++E +V DEADR+ +MGF  +++ I S +P +RQT+L
Sbjct: 184 PDIIIATPGRLMHVAVEMKLKLHSVEYVVFDEADRLFEMGFSEHLKEIISRLPESRQTVL 243

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  S  +E +            K   LL  L    
Sbjct: 244 FSATLPKVLVEFARAGLTEPVLIRLDVESKLSEQL-KLSFYHIRADDKPALLLYLLRTVV 302

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F   K +   L   L  QG     ++ ++DQ +R   +  F  G   +++ +
Sbjct: 303 RPQDQTIVFVATKHHTEYLKELLTAQGVDCTHVYSSLDQTARKINIGKFTHGKCSVLIVT 362

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARG+DIP + +V N+  P + + ++HR+GR  RAGR G A++ VA ++  ++  +  
Sbjct: 363 DLAARGIDIPLLDNVINYSFPAKPKLFLHRVGRVARAGRSGTAYSFVAPDETPYLFDLHL 422

Query: 363 LIEKKV 368
            + + +
Sbjct: 423 FLGRPL 428


>gi|152999828|ref|YP_001365509.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151364446|gb|ABS07446.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 411

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 167/418 (39%), Positives = 233/418 (55%), Gaps = 14/418 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L+  +V  +   GY  PTPIQ++ IP +L + DV   A TGTGKTA+F LP+L
Sbjct: 1   MSFSVLSLNSTLVNTLASLGYESPTPIQLEAIPTILAKRDVMAGAHTGTGKTAAFALPIL 60

Query: 61  TI-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                    +    VR  R L+L PTRELA QV  +F KY K  ++ V +  GG+  +AQ
Sbjct: 61  HHLLALSPLQELTAVRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDAQ 120

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
                 G DVLI TPGR+LDH  +G L +  + +LV DEADRMLDMGF+  IQ +   VP
Sbjct: 121 VAVFNAGIDVLIATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTLLFSAT+   +  +S+  L++PK IEV   ++TA  IE    A  A    +    
Sbjct: 181 SDRQTLLFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDADRKTELVSH 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                        +IF   K+ V  L   L K      A HG++ Q +R K+L  FK+G 
Sbjct: 241 L---VRSKNWHQVLIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQGK 297

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           IQ++VA+D+AARGLDI ++ +V NF++P  AE+YIHRIGRTGRAG  G A TL ++ED  
Sbjct: 298 IQVLVATDVAARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDAL 357

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            ++ +E +++K++   WL G      P   K+D     + +       K      +K+
Sbjct: 358 LLEEVEVVLDKRLPQQWLPG----FEPDFNKMDTEPRRNGKAAQKQRAKKRALGGKKR 411


>gi|323465937|gb|ADX69624.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus
           helveticus H10]
          Length = 453

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 134/440 (30%), Positives = 208/440 (47%), Gaps = 13/440 (2%)

Query: 1   MD--FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           M+  FAD  + P +   +    + KPT +Q K IP +L    V   A TG+GKT ++++P
Sbjct: 1   MNNIFADSRIKPAIQEGLKKIHFEKPTKVQEKVIPAMLSDLSVVVQAATGSGKTHAYLVP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +   +++    V+   TL      +   QVA       + +     L  G        K 
Sbjct: 61  IFNEIDEDAHYVQAIVTLPSRELADQLYQVARQLRDAAEMHFSIAHLAGGTDRERQLEKY 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 ++I TPGR+LD   +   +++ ++  VIDEAD  LDMGF+  I  + S +P   
Sbjct: 121 QNNTPQLVIATPGRLLDFVQKKVFVVDQVKTFVIDEADMTLDMGFLADIDQVASKMPKDV 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q   FSAT+  +L      ++ +P +I ++ PS  A TI           SK    +   
Sbjct: 181 QIAAFSATIPVKLSNFLRKYMAHPDQIVIDNPSIIAPTI---KNDLLDIGSKNRKSVLYK 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +       ++F N K+ V  L   L+ QG  V  IHG + +R R + L   ++G  Q 
Sbjct: 238 LLTMGQPYLALVFANTKQTVDELTRYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQFQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARGLDI  V  V N+++P   E  IHRIGRTGR G  G A TL+ +E++  I+
Sbjct: 298 VVASDLAARGLDIDGVSLVINYEIPRDIEFVIHRIGRTGRNGLSGHAITLIREEEMNRIE 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF-----DRRKKNY 413
            +EK +    D++      L P   K   ++ N   KN     K  G+      +RK  Y
Sbjct: 358 DLEK-MGVHFDFVEIKNGELVP--RKHYRSRENRQGKNRKFDIKLVGYVKKEKRKRKPGY 414

Query: 414 SSQKSHIPLKESEKISKLQQ 433
             +      +++ +  KL+Q
Sbjct: 415 KKKIKRAIQEDNRQKRKLEQ 434


>gi|294626035|ref|ZP_06704645.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599705|gb|EFF43832.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 458

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 129/381 (33%), Positives = 189/381 (49%), Gaps = 6/381 (1%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F+ L LSP +   +   GY   TPIQ +++P +LQ  DV   A TG+GKTA+F L +
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  L+    R +                        G      V L  G           
Sbjct: 61  LQKLDPALTRAQALVLC-PTRELADQVGKQLRRLATGIPNMKLVVLTGGMPLGPQLASLE 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I S     RQ
Sbjct: 120 AHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT  D ++ ++   L+ P  I V    S  E  +  F        K  A L    
Sbjct: 180 SLLFSATFPDSIRALARELLKEPVEITVEGADSAPEIDQQFFEVDPTYRQKAVAGLLL-- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ ++FCN +K V  +  SL++ GFS  A+HG+++QR R ++L  F   +  ++
Sbjct: 238 --RFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+HG A +LVA  +     A
Sbjct: 296 VASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETTRAQA 355

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           +E    + + W    L++  P
Sbjct: 356 LETEQGQPLKWSRAPLATARP 376


>gi|303289024|ref|XP_003063800.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454868|gb|EEH52173.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 425

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 164/376 (43%), Gaps = 3/376 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL +L  
Sbjct: 46  FKDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLAVLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE     +                   + F  Y  N N++V      I  + +  + +  
Sbjct: 106 LEPVPGEIGALILCHTRELAYQIMHEFERFSVYLPNVNVSVVFGGVNIKQQKEELEAKPP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + V+           +    L      ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 166 SVVVATPGRLKALAKDGSLSLKQCGHFILDECDKMLEQLDMRSDVQEIFKMTPHDKQVMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+ +P  I V+  +               +  K        L   
Sbjct: 226 FSATLSKEIRPVCKKFMNDPMEIYVDDETKLTLHGLVQHYIKLQEGEKNR--KLNDLLDA 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +    L   L +  F   AIH  + Q  R+    +FKEG  +++VA+
Sbjct: 284 LMFNQVVIFVKSVQRCTYLDKLLTECNFPSIAIHRGMSQEERLARYKSFKEGHKRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDAIE 361
           DL ARG+DI  V  V N+D+P+ A+ Y+HR+GR GR G  G A T + + ED   ++ + 
Sbjct: 344 DLVARGIDIERVNIVINYDMPDGADTYLHRVGRAGRFGTKGLAITFIASDEDSGVLNQVH 403

Query: 362 KLIEKKVDWLNGDLSS 377
           +  E ++  L   + +
Sbjct: 404 ERFEVEIKELPEQIDT 419


>gi|145974737|gb|ABQ00072.1| PL10A [Fenneropenaeus chinensis]
          Length = 660

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 131/411 (31%), Positives = 206/411 (50%), Gaps = 34/411 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD+ L+  +   +  A Y +PTP+Q   +P +L + D+   AQTG+GKTA+F++P+L 
Sbjct: 220 TFADIKLTEIIKQNISMARYDRPTPVQKYALPFILAKRDLMACAQTGSGKTAAFLVPILN 279

Query: 62  ILEKGRA-----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
            + +                + P +LIL PTRELA Q+ +   K+     +   ++ GG 
Sbjct: 280 QIYEQGPVQVKNNNPRGRNKQYPLSLILAPTRELATQIYEEARKFSYRARVRPCVVYGGA 339

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + L RG  +L+ TPGR+ D  +RGK+ ++  + LV+DEADRMLDMGF P I+ I
Sbjct: 340 DVVSQMRDLSRGCHLLVATPGRLADMIDRGKIGLDYCKYLVLDEADRMLDMGFEPQIRRI 399

Query: 171 TSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                          +FSAT   E+Q+++++FL N   + V    ST+E I    V    
Sbjct: 400 VEEDNMPPTGQRQTLMFSATFPKEIQRLAQDFLDNYIFLAVGRVGSTSENITQKIVWVSE 459

Query: 227 QYSKKC-------------------ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
              +                       +   +  +      ++F   KK    L   L +
Sbjct: 460 DDKRSFLLDILNAAGLDRATEANKDEKMAMGVPPRREESLTLVFVETKKGADALEEFLYR 519

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            G+ V +IHG+  QR R   L  F+ G   ++VA+ +AARGLDIP V HV NFD+P+  E
Sbjct: 520 HGYPVTSIHGDRSQREREDALRVFRSGQCPILVATAVAARGLDIPHVKHVINFDLPSDIE 579

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            Y+HRIGRTGR G  G A +    ++   +  + +L+++    L   L ++
Sbjct: 580 EYVHRIGRTGRMGNLGLATSFFNDKNRNMVRDLVELLQEAKQELPKWLEAI 630


>gi|154316321|ref|XP_001557482.1| hypothetical protein BC1G_03746 [Botryotinia fuckeliana B05.10]
 gi|160380649|sp|A6RUH2|DRS1_BOTFB RecName: Full=ATP-dependent RNA helicase drs1
 gi|150846532|gb|EDN21725.1| hypothetical protein BC1G_03746 [Botryotinia fuckeliana B05.10]
          Length = 801

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 140/389 (35%), Positives = 202/389 (51%), Gaps = 4/389 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++  +   G+ +PTPIQ KTIP+ L   DV G A TG+GKTA+FV+P+L 
Sbjct: 269 TFQSMSLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFVVPVLE 328

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +V   R  IL PTRELA Q      K   + ++   L +GG+  + Q  +L  
Sbjct: 329 RLLYRPKKVPTSRVAILMPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQEAELRL 388

Query: 122 GADVLICTPGRILDHFNRGKLLMNNI-EILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR +DH         +  EILV+DEADRML+ GF   +  I + +P +RQT
Sbjct: 389 RPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEAGFADELNEILTTIPKSRQT 448

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM+  +  +    L  P R+ V++  STA T+   F+        K       L 
Sbjct: 449 MLFSATMSSSVDNLIRVGLNRPVRLLVDSQKSTAGTLVQEFIRLRPGREGKRMGYLLYLC 508

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       I+F  QKK            G     +HG++ Q  R+K +  F++G    ++
Sbjct: 509 ANVYTDRVIVFFRQKKEAHRARIIFGLSGLKATELHGSMSQEQRIKSVEAFRDGKASFLL 568

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLDI  V  V N++ P   + Y+HR+GRT RAGR G+A T+ A+ D K + A 
Sbjct: 569 ATDLASRGLDIKGVDTVINYEAPQSHDIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAA 628

Query: 361 EKLIEK---KVDWLNGDLSSLNPPLEKID 386
            K       KV     + S  +   EK+D
Sbjct: 629 VKASRTQGAKVVSRVIEASEADSWSEKVD 657


>gi|111023319|ref|YP_706291.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
 gi|110822849|gb|ABG98133.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
          Length = 555

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 152/436 (34%), Positives = 229/436 (52%), Gaps = 11/436 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+  ++V A+ + G  +   IQ  T+PL L   D+ G A+TG GKT  F +P+L 
Sbjct: 39  TFAELGVRDEIVRALDEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLH 98

Query: 62  ILEKGRARVR----MPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-----LLIGGIPF 112
            +  G          PR L++ PTREL  QV  + E   K             + GG P+
Sbjct: 99  RISSGTTGTAALDGTPRALVIVPTRELCIQVTKDLEGAAKYLKGEKNKLEVLAIYGGRPY 158

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           E Q   L++GADV++ TPGR+LD  N+G L++  +E+LV+DEAD MLD+GF+P I+ I  
Sbjct: 159 ETQIATLQKGADVVVGTPGRLLDLANQGHLILGKVEVLVLDEADEMLDLGFLPDIERILG 218

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           +VP  RQT+LFSATM   +  ++  FL  P  I       +A           A    K 
Sbjct: 219 MVPDKRQTMLFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHIYRAHALDKA 278

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            ++ ++LQ++      I    + +    +   L ++GFSV ++HG+++Q +R K L  F+
Sbjct: 279 EMVARVLQAEGRGATMIFTRTK-RTAQKVADDLAERGFSVGSVHGDLNQVAREKALKAFR 337

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G I ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G A TLV  +
Sbjct: 338 TGKIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAVTLVDWD 397

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF-DRRKK 411
           DI     I+K +   +       SS     E++ I          P  +K+      R +
Sbjct: 398 DIPRWQLIDKALGLGIPDPAETYSSSPHLFEELSIPAGTTGTIKRPRVEKAEKVAPERSE 457

Query: 412 NYSSQKSHIPLKESEK 427
           N  +++S     E  +
Sbjct: 458 NTGAERSENTGAERSE 473


>gi|66475700|ref|XP_627666.1| Rok1p, eIF4A-1-family RNA SFII helicase [Cryptosporidium parvum
           Iowa II]
 gi|32398898|emb|CAD98363.1| dead box RNA helicase, possible [Cryptosporidium parvum]
 gi|46229099|gb|EAK89948.1| Rok1p, eIF4A-1-family RNA SFII helicase [Cryptosporidium parvum
           Iowa II]
 gi|323508863|dbj|BAJ77324.1| cgd6_3210 [Cryptosporidium parvum]
          Length = 480

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 105/373 (28%), Positives = 170/373 (45%), Gaps = 11/373 (2%)

Query: 1   MDFADL----GLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF 55
           + F ++     L   V+  +++   Y KPT IQ + IPL+    D+   + TG+GKT  +
Sbjct: 84  LTFKEIKECGNLPDWVLDNIMNILKYQKPTAIQSQVIPLLFSGVDLLVQSPTGSGKTLCY 143

Query: 56  VLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +LP+L  L+           LIL PTRELA Q+    +     +             +  
Sbjct: 144 ILPILGRLKN---DKVYCANLILSPTRELAQQIVREIKIILDIHGKKYRCRYISGKIDKA 200

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            +   +  D+ + TP R+ D      + +    ++V+DE D++LDMGF P I  I S   
Sbjct: 201 QESNTKRLDIAVSTPYRLADICRNNIINLQGCSMIVLDEVDKLLDMGFAPQIDEILSHSN 260

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +   +  A  +  L ++  N   +  +  V              +      +K  A +
Sbjct: 261 IPKGGKVQIAAFSATLPQIVINLADSIMKSPVKVTLGHRLAASSTIIQELVCVTKDDAKI 320

Query: 236 Q---QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           +   QL++    M   ++F N K +   L   L      V AIH ++ +  R  I+  F+
Sbjct: 321 ESLRQLIKQGKIMLPTLVFTNSKDDAQRLFKKLMYDNLIVEAIHSDMPKVKRDNIIQRFR 380

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G I +++ +DL ARG+D  +V  V N+D P+   NYIHR+GR GRAGR G A T     
Sbjct: 381 TGKIWILICTDLMARGVDFKNVSCVVNYDFPHSPSNYIHRVGRCGRAGRTGYAITFFTLR 440

Query: 353 DIKHIDAIEKLIE 365
           DI  I +I K+I+
Sbjct: 441 DIPKIKSIAKVIK 453


>gi|323335994|gb|EGA77270.1| Has1p [Saccharomyces cerevisiae Vin13]
          Length = 505

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 102/390 (26%), Positives = 188/390 (48%), Gaps = 6/390 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS   + A+   G+   T +Q +TIP +L   DV G A+TG+GKT +F++P + 
Sbjct: 43  KFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGXDVLGAAKTGSGKTLAFLIPAIE 102

Query: 62  ILEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-L 119
           +L   + + R    +I + PTRELA Q+     +  + ++ T  ++IGG     + +K +
Sbjct: 103 LLHSLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLM 162

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    ++      +    N    +  N++ L+IDEADR+L++GF   ++ I  ++P   +
Sbjct: 163 KGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNEDR 222

Query: 180 TLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             + FSAT T +++ ++   L+         P +   T +          S K  LL   
Sbjct: 223 QSMLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFLLLFS 282

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +   +V      L      V  +HG   Q+ R      F      +
Sbjct: 283 FLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGI 342

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R  +  GK+   +   ++  +
Sbjct: 343 LICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNELGFL 402

Query: 358 DAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
             ++  K+   + ++    ++++   LEK+
Sbjct: 403 RYLKASKVPLNEYEFPENKIANVQSQLEKL 432


>gi|224042619|ref|XP_002190578.1| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3
           [Taeniopygia guttata]
          Length = 675

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 138/429 (32%), Positives = 216/429 (50%), Gaps = 30/429 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 197 SFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 256

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 257 QIYADGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVV 316

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 317 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 376

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 377 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 436

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK    L   L  +G++  +IHG+  QR
Sbjct: 437 WVEEPDKRSFLLDLLNATGKDSL--TLVFVETKKGADALEDFLYHEGYACTSIHGDRSQR 494

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 495 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 554

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH--ARKNNPIP 400
           G A +   + +I     +       +D L      +   LE +   QH+     +     
Sbjct: 555 GLATSFFNERNINITKDL-------LDLLVEAKQEVPSWLENMAYEQHHKGGGSRGRSKS 607

Query: 401 QKSTGFDRR 409
           + S GF  R
Sbjct: 608 RFSGGFGAR 616


>gi|156399588|ref|XP_001638583.1| predicted protein [Nematostella vectensis]
 gi|156225705|gb|EDO46520.1| predicted protein [Nematostella vectensis]
          Length = 433

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 98/382 (25%), Positives = 170/382 (44%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH--DVCGIAQTGTGKTASFVLPM 59
            F +L LS  +   V D G+ KP+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 47  SFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPVNMIAQSQSGTGKTAAFVLTM 106

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++        P+ + L PT ELA Q     E  GK+                + +K 
Sbjct: 107 LSRVDAT---KPYPQVICLSPTYELARQTGKVAEAMGKHCPHIKINYAVRGNQFPRGQKC 163

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +            ++          ++ +    +   G       I   +    Q
Sbjct: 164 TDHIIIGTPGTLLDWIRKSKCFEPRKVSVFVLDEADIMIALQGHQDQSIRIHKSLHKDCQ 223

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  +++ K +E  + NP  I +     + + I+  +V       K  AL    +
Sbjct: 224 VLLFSATYDEDVMKFAETVVPNPIIIRLRREEESLDNIKQYYVVCKNSEDKFEALC--NM 281

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               ++   ++FC+ ++N   L   + K+G +V  + G I    R+ +L  F+ G  +L+
Sbjct: 282 YGVLSIGQCVVFCHTRRNAAWLAEKMVKEGHAVALLSGEITIEQRIAVLERFRLGKEKLL 341

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRA------ENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           + ++++ARG+D+  V  V N+D+P         E Y+HRIGRTGR G+ G A   +  + 
Sbjct: 342 ITTNVSARGIDVEQVTLVINYDMPMDMQGKADFETYLHRIGRTGRFGKSGIAVNFIDGQR 401

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  +  IE+   KK+  L  D
Sbjct: 402 SMNIMKKIEEHFGKKIQHLQAD 423


>gi|320593758|gb|EFX06167.1| dead box RNA helicase [Grosmannia clavigera kw1407]
          Length = 857

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 124/460 (26%), Positives = 220/460 (47%), Gaps = 20/460 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D+ LS      + D+ +   T IQ K IP  L+  D+ G A+TG+GKT +F++P+L 
Sbjct: 52  NFSDVPLSEPTKMGLRDSHFETLTDIQSKAIPAALRGCDILGAAKTGSGKTLAFLVPVLE 111

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L + R         LI+ PTREL+ Q+ +   K G+++  +  L+IGG   + + +++ 
Sbjct: 112 KLYRARWTEYDGLGALIISPTRELSVQIFEVLRKVGRHHRFSAGLVIGGKSLKEEAERVG 171

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +        L +NN+++LV+DEADR++DMGF   +  +   +P  RQT
Sbjct: 172 RMNILVCTPGRMLQHLDQTASLEVNNLQMLVLDEADRIMDMGFQSAVDALVEHLPQGRQT 231

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT +  +  ++   L++P+ I V+  ++ A   +          ++K         
Sbjct: 232 LLFSATQSKRVSDLARLSLKDPEYIAVHEAAAAATPSQLQQHYVVTPLAEKL-DTLYGFI 290

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQL 298
             +     I+F +  K V     ++      +    +HG   Q +R++I+S F       
Sbjct: 291 RANLKCKMIVFFSSGKQVRFAYEAIRHLQPGIQLLHLHGRQKQVARLEIISRFSAAKHAC 350

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+ ARG+DIP V  V   D P  A+ YIHR GRT R    GKA   +   +    D
Sbjct: 351 LFATDVVARGVDIPMVDWVVQADCPEDADTYIHRSGRTARYESAGKAILFLDPSEE---D 407

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            + + +++K           N P+ K+++ +    +K+     ++  F +    Y +QK+
Sbjct: 408 GMVRRLQQK-----------NVPIHKVNVREKK--KKSIREQLQNMCFQQNDIKYLAQKA 454

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
            I    S  + K ++    +  D  GF  +M     P+ R
Sbjct: 455 FISYTRSVHLQKDKEVFDLDKLDLDGFAQSMGLAGAPQIR 494


>gi|149196524|ref|ZP_01873578.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa
           HTCC2155]
 gi|149140204|gb|EDM28603.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa
           HTCC2155]
          Length = 412

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 133/387 (34%), Positives = 211/387 (54%), Gaps = 7/387 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L     +  AV +  + + T IQ K IPL+ +  D+   +QTGTGKT +F  P++
Sbjct: 1   MSFEQLNFPDYLSRAVDNLNFSEATDIQAKAIPLIQEGKDLLAESQTGTGKTLAFSFPLI 60

Query: 61  TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQN 116
             +     + +      L+L PTRELA QV   F  Y +     +  A LIGG   + Q 
Sbjct: 61  ERINTLPPKKKKISILGLVLVPTRELALQVEKAFTNYAEFSLRPIKTATLIGGENIDGQI 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +KL  G DVLI TPGRI++  N G++ +  +E+L++DEAD+MLD+GF   ++ +   +P 
Sbjct: 121 RKLRMGLDVLIATPGRIIELINLGEVRLVELEMLILDEADKMLDLGFADELKELLEALPK 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ LLFSAT+  ++Q+++E FL     + ++    T + IE   +   A   ++     
Sbjct: 181 KRQNLLFSATLPQKVQQLAEEFLNAAVELRISRDQITGDNIEQRVIEVDANLRRQV---L 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q L   +  K+ IIF + K++  NL + L+K G      HG++ Q  R+K+L  F+    
Sbjct: 238 QKLFKDEQWKHTIIFVSSKRSAFNLANKLKKAGIQAQDFHGDLTQDERIKVLKRFQNKDF 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARG+DI  + HV N+D+P    +Y+HRIGRTGRAG+ G A + +      H
Sbjct: 298 PILIATDIAARGIDISKLSHVINYDLPRSPMDYVHRIGRTGRAGQKGVAISFINPATEDH 357

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLE 383
              I+K    K++    +      P+E
Sbjct: 358 FKTIQKQAGIKLEKERIEGFDQITPVE 384


>gi|330962153|gb|EGH62413.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 484

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 125/373 (33%), Positives = 210/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D  L+P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 97  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 156

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K  +L V   +GG+ F+ Q K+
Sbjct: 157 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTDLNVMTFVGGMDFDKQLKQ 216

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 217 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 276

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT T+++  +++ +  +P  +E+ + +  ++ +E    A       K    
Sbjct: 277 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYN 336

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                + +  +  ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 337 L---VTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 393

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 394 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 453

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 454 QLPAIEEKLGRKI 466


>gi|300692366|ref|YP_003753361.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Ralstonia
           solanacearum PSI07]
 gi|299079426|emb|CBJ52099.2| ATP-dependent RNA helicase, stimulated by 23S rRNA [Ralstonia
           solanacearum PSI07]
          Length = 471

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 143/405 (35%), Positives = 207/405 (51%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P V+  ++  GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 16  FSTLALAPAVLANLVQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + ++L PTRELA QV     +  +       L +  G P   Q   LE 
Sbjct: 76  LDA---RRFDVQAMVLCPTRELADQVTQEIRRLARAEENVKVLTLCGGTPMRPQTASLEH 132

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH  RG L +  ++ LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 133 GAHVVVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPPERQTL 192

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K      +   R                    Y     +      LL  
Sbjct: 193 LFSATYPDGIAK----LSRQILRNPKEVKLEERHDDSKIRQRFYEVTDDERLHAVGLLLK 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FCN K+   NL   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 249 HYRPVSTLAFCNTKQQCRNLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  + +IE
Sbjct: 309 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGSIE 368

Query: 362 KLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           + + ++V+W        G  + L PP+E + I      RK+   P
Sbjct: 369 QALGREVEWHRLAELDTGSDAPLLPPMETLQIL---GGRKDKIRP 410


>gi|330828193|ref|YP_004391145.1| ATP-dependent RNA helicase DbpA [Aeromonas veronii B565]
 gi|328803329|gb|AEB48528.1| ATP-dependent RNA helicase DbpA [Aeromonas veronii B565]
          Length = 459

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 148/459 (32%), Positives = 236/459 (51%), Gaps = 21/459 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ L LSP +   +   GY++ TPIQ +++PLVL   D+   A+TG+GKTA+F L +L 
Sbjct: 5   EFSSLNLSPALQENLTSLGYLQMTPIQAQSLPLVLDGKDLIAKAKTGSGKTAAFGLGLLA 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R  V+    L+L PTRELA QVA    +  +       + +  G P   Q+  L 
Sbjct: 65  KLNVNRLEVQ---ALVLCPTRELADQVAQEIRRLARALPNVKLVTLCGGTPTAPQSATLS 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA + + TPGRIL H  +G L ++ ++ LV+DEADRMLDMGF   I  + S  P  RQT
Sbjct: 122 FGAHIAVGTPGRILKHLEQGTLELSGLKTLVLDEADRMLDMGFGEDINRVISYAPERRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + + +      +  +R  V     +           Y   + +       L 
Sbjct: 182 LLFSATYPEGIAQ----MSRGVQRNPVEVSVESLHEGSAIEQKLYEVPAGQRLDALTWLL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN K+   ++   L  +GFS  A++G+++QR R ++L  F  G+  ++V
Sbjct: 238 SHYQPSSCVVFCNTKRACNDVADHLAAKGFSALALNGDLEQRERDQVLVRFANGSATILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++G V N+++    E ++HRIGRTGRAG+ G A +L    + + ++ I
Sbjct: 298 ATDVAARGLDIKELGAVINYELTYDPEVHVHRIGRTGRAGQQGLALSLYQPNEAQRVNFI 357

Query: 361 EKLIEKK-----VDWLNGDLSSLNPPLEK--IDIAQHNHARKNNPI-----PQKSTGFDR 408
           E+  +       +D +  D+  + P +    ID  +    R  + +          G D 
Sbjct: 358 EEYQQAPMPLGDLDSIGRDIKPIAPQMVTLSIDAGRKTKVRAGDILGALTGEGGIAGADV 417

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
            K   S Q S++ +K S   + L++ +QE       +R 
Sbjct: 418 GKIQISEQYSYVAVKRSVASAALKR-LQEGKIKGRSYRA 455


>gi|116511271|ref|YP_808487.1| superfamily II DNA/RNA helicase [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116106925|gb|ABJ72065.1| Superfamily II DNA and RNA helicase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 446

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 132/446 (29%), Positives = 209/446 (46%), Gaps = 13/446 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +   + +  + KPT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTDFNFKDYINQTLENIKFEKPTEVQQKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVAD-NFEKYGKNYNLTVALLIGGIPFEAQNKK- 118
             +      V+     I  P+RELA Q+     E    N  + V+  +GG     Q KK 
Sbjct: 61  QNINPELDEVQAV---ITAPSRELATQIYKAAQEFVKVNGKIRVSNFVGGTDKARQIKKL 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 ++I TPGRI D      L+++     V+DEAD  LDMGF+  +  I S      
Sbjct: 118 EAAQPHIVIGTPGRIHDLVKSNALVVHTARTFVVDEADMTLDMGFLADVDQIASSFGKRV 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+  +LQ   + +L NP   ++   +  ++TIE+  V+T      +  L    
Sbjct: 178 QMLVFSATIPQKLQPFLKKYLHNPVMEKIANKTVISDTIENWLVSTKGSSHNQLLLQLTK 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +       +IF N K  V ++ H L   G  V  IHG++  R R +I+++ K    Q 
Sbjct: 238 ALNPYM---AMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQY 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  V H+ N ++P     ++HR+GR+GR G  G A TL +  D   I 
Sbjct: 295 VVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLRGTAITLYSPSDDSSIR 354

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG--FDRRKKNYSSQ 416
            IEK+    V +    +             +    +K + I   + G     +KK     
Sbjct: 355 EIEKM---GVTFQPKAVKDGEIVDSYDRDRREKRTKKQDEISLATRGALAKGKKKVKPGY 411

Query: 417 KSHIPLKESEKISKLQQDIQENDADS 442
           K  I  +  E+  K ++  +  +A  
Sbjct: 412 KRAIKWQIEEENKKNRRAERNKNARK 437


>gi|183234221|ref|XP_651045.2| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|169801204|gb|EAL45659.2| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 694

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 95/400 (23%), Positives = 161/400 (40%), Gaps = 9/400 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    +S   +  +    ++  TPIQ   IP  L   D+ G A+TG+GKT +F++P++  
Sbjct: 91  FDQFPISKATIQLLNKNRFITMTPIQRAAIPHALAGRDIIGAARTGSGKTLAFLIPLIEF 150

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + + R         I+       AQ   +          T AL+ GG   + + K +   
Sbjct: 151 MYRSRWTELDGLCSIILSPTRELAQQIFDVFASIAGERFTAALITGGKDTKEEAKVIRLM 210

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++      +    N        + +L++DEADR+LDMGF   +  I   +P  RQT+L
Sbjct: 211 NVLICTPGRLLYHLDNTPHFNTTPLRMLILDEADRILDMGFKKDLTAILEHLPKQRQTML 270

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT T  +Q +                 +   T E                +       
Sbjct: 271 FSATQTKSVQDLI-RLSLRHPEYISVDEKAQHATPETLNQTYMLLGDGDKINVLFSFIRT 329

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI--HGNIDQRSRMKILSNFKEGTIQLMV 300
            T    I+F    K V     + +K          +G   Q SR + LS F +    ++ 
Sbjct: 330 HTNSKMIVFFQTTKEVRFFFETFKKLRVGAVLYLLYGRQSQNSRNEQLSTFTKEKRGILF 389

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+A+RGLDI  V  +  +D P     YIHR+GRT R   +G+A  L+   +   I+ +
Sbjct: 390 CTDIASRGLDIQGVDWIVQYDCPEDTAQYIHRVGRTARINHNGQALLLLTHNEEAFIEQL 449

Query: 361 EKL------IEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           EK       +E  +  +    + +   + ++ I +H   +
Sbjct: 450 EKAKVPLNRVEPNIARMKNIANDITELMIEVPIIKHYAEK 489


>gi|326923057|ref|XP_003207758.1| PREDICTED: ATP-dependent RNA helicase DDX18-like [Meleagris
           gallopavo]
          Length = 703

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 119/392 (30%), Positives = 201/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADL-GL-SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            F  L GL S   +  + D G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 211 SFTSLAGLVSENTLKGISDMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAFLIPA 270

Query: 60  LTILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K +   R     +IL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 271 VELIYKLKFMPRNGTGVIILSPTRELAMQTYGVLKEVMNHHVHTYGLIMGGSNRSAEAQK 330

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+L++GF   ++ I  L+P  
Sbjct: 331 LGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEEEMKQIIKLLPKR 390

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+          +    T++          S+K  LL  
Sbjct: 391 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDNKETATVDGLEQGYVVCPSEKRFLLLF 450

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 451 TFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQTKRTTTFFQFCNAESG 510

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
           +++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 511 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGINGR-GHALLILRPEELG 569

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  ++   + ++    +S +   LEK+
Sbjct: 570 FLRYLKQARVPLSEFEFSWSKISDIQSQLEKL 601


>gi|308177940|ref|YP_003917346.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
 gi|307745403|emb|CBT76375.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
           Re117]
          Length = 538

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 134/433 (30%), Positives = 223/433 (51%), Gaps = 20/433 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL +   +V ++ +AG   P PIQ  T+P+ L  +D+ G A+TGTGKT  F +P L 
Sbjct: 27  SFADLKVREDIVASLSEAGIEYPFPIQALTLPVALGGNDIIGQAKTGTGKTLGFGIPALQ 86

Query: 62  ILEKGRARVRM-------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            + +   +          P+ LI+ PTRELA QV  +  +  K+ N+++  + GG P+E 
Sbjct: 87  RVVREGDKGYEDLEFPGAPQALIVAPTRELAIQVGADLAQASKHSNISITTIYGGRPYEE 146

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L+ G DV++ TPGR++D   +  L +  ++ +V+DEAD MLD+GF+P ++ I + +
Sbjct: 147 QINALKAGTDVIVGTPGRLIDLNRQRVLNLKQVKTVVLDEADEMLDLGFLPDVERILAAL 206

Query: 175 PFTRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           P  RQ +LFSATM   +  ++  ++ +       +     + T  +     Y  ++    
Sbjct: 207 PPVRQAMLFSATMPGAVITMARRYMTRPTHIRAQDPGDDDSLTKRNIRQLIYRAHNMDKD 266

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            +   L   +     IIF   K++   L   L  +GF+  ++HG++ Q +R + L  F+ 
Sbjct: 267 EMVARLLQAEGRGKTIIFTQTKRSAARLSDELIDRGFNAGSLHGDLGQGAREQALKAFRS 326

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G ++++VA+D+AARG+D+ DV HV N   P+    Y+HR+GRTGRAG  G A T V  + 
Sbjct: 327 GKVEILVATDVAARGIDVDDVTHVVNLQCPDDENTYLHRVGRTGRAGNTGTAVTFVDWDS 386

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           +     I K +   V            P+E    + H  A  +  IP+ + G  +R K  
Sbjct: 387 VPRWSLINKALGLNVPE----------PVETYSSSPHFFA--DLEIPKGTKGRLQRAKKS 434

Query: 414 SSQKSHIPLKESE 426
           +  +     +  E
Sbjct: 435 APAEGDGSPRRDE 447


>gi|298241052|ref|ZP_06964859.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM
           44963]
 gi|297554106|gb|EFH87970.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM
           44963]
          Length = 562

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 150/465 (32%), Positives = 225/465 (48%), Gaps = 29/465 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L P     +      + TPIQ + IP +L   DV G + TG+GKT ++ +P++ 
Sbjct: 3   SFQDLPLQPATRAVLASMQITEQTPIQAEAIPALLAGKDVIGQSATGSGKTLAYAIPLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L K +   +    L+L PTRELA QV      +     LT ALL+GG  +E Q   L  
Sbjct: 63  RLAKNKRVAQ---ALVLVPTRELAVQVNSVLSTFAAPRRLTTALLVGGRRYEKQISALRY 119

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA ++I TPGRI DH  +G L++ +I I V+DEAD+MLD GF P I+ I    P  RQ  
Sbjct: 120 GAQIIIGTPGRIKDHLEQGNLVLRDIRICVLDEADQMLDSGFGPEIEQILETSPEDRQMA 179

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   + K+ E +L++P ++ +   +    TIE            +          
Sbjct: 180 LFSATMPTWIAKLQEKYLKDPVKVTITPEAGVQSTIEQIVYQVPRGKKVEALCTLLASTQ 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D     +IF   K  V  L   L   GF+V   HG+  QR+R  +L  F+ G +Q+++A
Sbjct: 240 GDI---SLIFGRTKMGVERLGEQLSNLGFAVGTFHGDKSQRAREDVLMAFRRGQVQMLLA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N+++P+  E + HRIGRTGR GR+GKA TL+   D+     + 
Sbjct: 297 TDVAARGLDIRGITQVINYELPDSDELFTHRIGRTGRMGRYGKAVTLLVPSDMSKWRRMS 356

Query: 362 KLIEKKVDWLNG---DLSSLNPPLEKIDIAQHNHA-------------------RKNNPI 399
           +   + V        D ++L  P+   +  Q   +                   R+    
Sbjct: 357 RSFGQPVAVQKMVLNDEAALARPMVMSEGKQERDSEQVLLEDDDTQVVTLNERPRRERSR 416

Query: 400 PQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLG 444
            Q++ G   RK+ Y   ++    ++ E+ +    D  E  A   G
Sbjct: 417 FQETQGAYTRKRPYERTRNEFSARKPERSTDTFADA-ERPARPRG 460


>gi|227551392|ref|ZP_03981441.1| ATP-dependent RNA helicase [Enterococcus faecium TX1330]
 gi|257895994|ref|ZP_05675647.1| helicase [Enterococcus faecium Com12]
 gi|227179511|gb|EEI60483.1| ATP-dependent RNA helicase [Enterococcus faecium TX1330]
 gi|257832559|gb|EEV58980.1| helicase [Enterococcus faecium Com12]
          Length = 449

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 192/365 (52%), Gaps = 9/365 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F      P +  A+   G+ +PT +Q + IPL+ +  ++ G +QTGTGKT +F+LP+  
Sbjct: 3   NFDIFRFKPFINEALAAKGFKQPTEVQERLIPLIAKGKNIIGQSQTGTGKTHTFLLPLFE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNKK 118
            +   +  V++    I  P+RELAAQ+ +   +  K     + +             N+ 
Sbjct: 63  KINADKEEVQVV---ITAPSRELAAQIYEAATQIAKFSTPEIRVSNFVGGTDKQRQINRL 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +   V++ TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I S +P   
Sbjct: 120 HHQQPQVVVGTPGRILDMMNEQALKIHTAFAFVVDEADMTLDMGFLNEVDQIASRLPEKL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+     +++NP   E+   +  +E IE+      +   K    +   
Sbjct: 180 QFLVFSATIPEKLRPFLRKYMENPIIEEIKPKAVISEDIEN---WLISTKGKDENQMIYQ 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +       I+F N K++V  +   L+ QG  V  IHG+I  R R +++   +    Q 
Sbjct: 237 LLTIGHPYLAIVFANTKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLEYQY 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N ++P   + +IHR+GRTGR G  G A TL +  D + ID
Sbjct: 297 VVATDLAARGIDIEGVSHVINAEIPEDLDFFIHRVGRTGRNGLKGTAITLYSPNDEQAID 356

Query: 359 AIEKL 363
           AIEKL
Sbjct: 357 AIEKL 361


>gi|312870458|ref|ZP_07730578.1| DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus oris
           PB013-T2-3]
 gi|311094015|gb|EFQ52339.1| DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus oris
           PB013-T2-3]
          Length = 457

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 114/447 (25%), Positives = 197/447 (44%), Gaps = 24/447 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L P +V AV    + +PT +Q + IP +L    V G + TG+GKT +F+LP+ +
Sbjct: 5   TFNDFKLKPYLVKAVTAINFHEPTAVQERVIPDILAGKSVVGQSATGSGKTHAFLLPLFS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+   T             A    ++          + G        +   +
Sbjct: 65  RIDPAVQEVQAVITTPSRELAYQIYNAAKQLNQFADQPLTIHNYVGGTDKQHQIAQLERK 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LD      L ++   + V+DEAD  LDMGF+  +  I    P   Q +
Sbjct: 125 QPQLVIGTPGRVLDLIKSQHLDVHTATMFVVDEADMTLDMGFLEQVDQIAGRFPENLQMM 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+ ++L+   + ++ NP   E+ T +     +E+  ++T      +         +
Sbjct: 185 VFSATIPEKLRPFLKKYMANPVIEEIPTATVINPDVENWLLSTKGHDRNQLIYQLL---T 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F N K+    L   L +QG  V  IHG ++ R R +++   +    Q +VA
Sbjct: 242 MGEPYLALVFANTKERAEELTRYLSEQGLKVALIHGGLEPRRRKRVMRQIRNLDYQYVVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+DI  V  V N D+P   E ++HR+GRTGR    G A TL    + + I  +E
Sbjct: 302 TDLAARGIDIDGVSLVINDDLPTDLEYFVHRVGRTGRNQMTGTAITLYEPAEDELIAKLE 361

Query: 362 KLIEKKVDWLNGDLSS--------------LNPPLEKIDIAQHNHARKNNP--IPQKSTG 405
              ++ + ++  ++ +                   E++D +   + +K      P     
Sbjct: 362 ---DQGIKFVPKEVKNGRLVTTHDRNRRKMFRRRQEELDPSMKGYVKKAKRKVKPGYKKR 418

Query: 406 FDRRKKNYSSQKSHIPLKESEKISKLQ 432
             R  K+   QK  + L+   KI K +
Sbjct: 419 IKRAIKDDEQQKRRLELR--HKIRKAK 443


>gi|164657043|ref|XP_001729648.1| hypothetical protein MGL_3192 [Malassezia globosa CBS 7966]
 gi|159103541|gb|EDP42434.1| hypothetical protein MGL_3192 [Malassezia globosa CBS 7966]
          Length = 435

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 102/378 (26%), Positives = 165/378 (43%), Gaps = 5/378 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 54  FRDFLLKPELLRAISDLGFEHPSEVQQECIPQSILGMDVVCQAKSGMGKTAVFVLASLQQ 113

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           LE     V +       E   ++  + A   +   +     V         +A      +
Sbjct: 114 LEPVDGEVSVLVLCHTRELAYQIRNEYARFTKYMPEVRTSVVYGGTPIKEDQAMLADKAK 173

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM-GFIPYIQNITSLVPFTRQT 180
              +L+ TPGR+        L   +++  VIDE D++LD       +Q I    P  +Q 
Sbjct: 174 CPHILVGTPGRMNGLVRDKSLKAGDVKHFVIDECDKILDNLDMRRDVQEIFRATPHHKQV 233

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT+  E++   + F+QNP  I V+  +         +     +  K        L 
Sbjct: 234 MMFSATLAKEIRPTCKKFMQNPLEIYVDDETKLTLHGLQQYYVRLEEAGKNR--KLNDLL 291

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF         L   L +  F    IHG + Q  R+K    FK    +++V
Sbjct: 292 DTLEFNQVIIFVKSISRANQLDQLLRECNFPSICIHGGLPQDERIKRYQQFKNFEKRILV 351

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           A+D+  RG+D+  V    ++D P+ A++Y+HR+GR GR G  G A T V + ED + +  
Sbjct: 352 ATDIFGRGIDVERVNVSISYDTPSDADSYLHRVGRAGRFGTKGLAITFVSSDEDAEVLKQ 411

Query: 360 IEKLIEKKVDWLNGDLSS 377
           I+   E  V  L   + +
Sbjct: 412 IQSRFEVAVPELPETIEA 429


>gi|326795505|ref|YP_004313325.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326546269|gb|ADZ91489.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 443

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 202/371 (54%), Gaps = 6/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L  +V+ +V + G+   + IQ  T+P  L+ +D+ G AQTGTGKTA+F+L M++ 
Sbjct: 63  FHDLNLPDRVLKSVSEMGFEYCSEIQAATLPATLEGYDLIGQAQTGTGKTAAFLLAMVSD 122

Query: 63  LEKGRARVRMPRTL----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      R +    I+ PTRELA Q+AD  EK  +N +L V  L+GG+ +E Q + 
Sbjct: 123 FLDYPVEEERARNMARGLIIAPTRELALQIADEAEKITQNCSLNVISLVGGMSYEKQKRA 182

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 D+L+ TPGR+LD     K ++N +E+LV+DEADRML MGFIP +++I  + P  
Sbjct: 183 LETERVDILVATPGRLLDFARSKKAMLNKVEVLVLDEADRMLSMGFIPDVKSIIRMTPHK 242

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            +      + T   + +     Q     +  +      T ++     Y   + +   + +
Sbjct: 243 ERRQTMLFSAT-FPKDIQNLARQWTYFPKEVSVVPKEATNKNIDQVIYTVEADQKWPVLK 301

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   D  +  IIF N++     L   L++   +   + G + Q  R+K L NFK+G IQ
Sbjct: 302 SLIEDDGNQRTIIFANRRDETRELYELLKEAKINCAILSGEVSQDKRVKTLKNFKDGRIQ 361

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A RG+ + ++  V N+ +P   E+Y+HRIGRTGR G  GK+ +  +++D   I
Sbjct: 362 VLVATDVAGRGIHVDNIELVVNYTLPEDPEDYVHRIGRTGRGGEMGKSVSFASEDDAFLI 421

Query: 358 DAIEKLIEKKV 368
             IE ++ +K+
Sbjct: 422 PEIEGVVGEKI 432


>gi|257055065|ref|YP_003132897.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
 gi|256584937|gb|ACU96070.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
          Length = 449

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 143/431 (33%), Positives = 224/431 (51%), Gaps = 13/431 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   +  A+  AG   P PIQ  T+P  L   DV G AQTG+GKT +F L +L
Sbjct: 20  ITFADLNLPKALHRALRKAGLHTPFPIQAATLPDALAGRDVLGRAQTGSGKTLAFGLALL 79

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + L+ G+AR R PR L+L PTRELA QVAD      K   L    ++GG+  + Q + L 
Sbjct: 80  SRLDGGKARPRRPRALVLVPTRELAMQVADALVPLAKAMGLWCRTVVGGMSLQRQAEALL 139

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D++I TPGR+ DH  +G   ++ IE++ IDEAD+M DMGF+P ++ I    P   Q 
Sbjct: 140 RGVDLVIATPGRLSDHVRQGTCTLDGIELVAIDEADQMADMGFLPQVRQILDRTPPDGQR 199

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ D +  +   +L +P    V   +++ +T+EH       +  +         Q
Sbjct: 200 LLFSATLDDAVADLVSRYLTDPVTHSVAPVTASVDTMEHHLFQVEHKDKQAVVTEIAARQ 259

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K +V  L   L   G    A+HG   Q  R ++L++F+ G + ++V
Sbjct: 260 -----GRTILFVRTKHHVDRLTTRLRAAGVPAAALHGGKTQGQRNRVLADFRSGRMPVLV 314

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ +  +G V + D     ++Y+HR GRT RAG  G   TLV +E  + +   
Sbjct: 315 ATDVAARGIHVDGIGLVLHVDPAADHKDYLHRAGRTARAGASGTVVTLVTREQRRTVR-- 372

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
            +++E+    +    + ++P     ++ +   AR  + +P       RR+   S Q+   
Sbjct: 373 -RMLERA--GVRPHYAVVSP--GDAELIRITGARTPSGVPVVDRTSTRRQARPSQQRRRT 427

Query: 421 -PLKESEKISK 430
            P ++   +  
Sbjct: 428 GPARDRSPLRG 438


>gi|197099360|ref|NP_001124720.1| ATP-dependent RNA helicase DDX3Y [Pongo abelii]
 gi|73620771|sp|Q5RF43|DDX3Y_PONAB RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName: Full=DEAD
           box protein 3, Y-chromosomal
 gi|55725665|emb|CAH89614.1| hypothetical protein [Pongo abelii]
          Length = 658

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 137/427 (32%), Positives = 216/427 (50%), Gaps = 28/427 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D+ +   ++  +    Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+
Sbjct: 179 NFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILS 238

Query: 62  ILEKGRA---------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
            +                    R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 239 QIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 298

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 299 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 358

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 359 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 418

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 419 WVEDLDKRSFLLDLLGATGRDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 476

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 477 DREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNL 536

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           G A +   ++++     +       +D L      +   LE +    H          + 
Sbjct: 537 GLATSFFNEKNMNITKDL-------LDLLVEAKQEVPSWLENMAYEHHYKGGSRGRSKRF 589

Query: 403 STGFDRR 409
           S GF  R
Sbjct: 590 SGGFGAR 596


>gi|125623300|ref|YP_001031783.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492108|emb|CAL97037.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300070051|gb|ADJ59451.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 446

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 132/446 (29%), Positives = 209/446 (46%), Gaps = 13/446 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +   + +  + KPT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTDFNFKDYINQTLENIKFEKPTEVQQKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVAD-NFEKYGKNYNLTVALLIGGIPFEAQNKK- 118
             +      V+     I  P+RELA Q+     E    N  + V+  +GG     Q KK 
Sbjct: 61  QNINPELDEVQAV---ITAPSRELATQIYKAAQEFVKVNDKIRVSNFVGGTDKARQIKKL 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 ++I TPGRI D      L+++     V+DEAD  LDMGF+  +  I S      
Sbjct: 118 EAAQPHIVIGTPGRIHDLVKSNALVVHTARTFVVDEADMTLDMGFLADVDQIASSFGKRV 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+  +LQ   + +L NP   ++   +  ++TIE+  V+T      +  L    
Sbjct: 178 QMLVFSATIPQKLQPFLKKYLHNPVMEKIANKTVISDTIENWLVSTKGSSHNQLLLQLTK 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +       +IF N K  V ++ H L   G  V  IHG++  R R +I+++ K    Q 
Sbjct: 238 ALNPYM---AMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQY 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  V H+ N ++P     ++HR+GR+GR G  G A TL +  D   I 
Sbjct: 295 VVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLRGTAITLYSPSDDSSIR 354

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG--FDRRKKNYSSQ 416
            IEK+    V +    +             +    +K + I   + G     +KK     
Sbjct: 355 EIEKM---GVTFQPKAVKDGEIVDSYDRDRREKRTKKQDEISLATRGALAKGKKKVKPGY 411

Query: 417 KSHIPLKESEKISKLQQDIQENDADS 442
           K  I  +  E+  K ++  +  +A  
Sbjct: 412 KRAIKWQIEEENKKNRRAERNKNARK 437


>gi|169869158|ref|XP_001841147.1| ATP-dependent RNA helicase eIF4A [Coprinopsis cinerea okayama7#130]
 gi|116497789|gb|EAU80684.1| ATP-dependent RNA helicase eIF4A [Coprinopsis cinerea okayama7#130]
          Length = 397

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 210/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L P ++  +   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 25  NFDNMDLKPDLLRGIYAYGFERPSAIQQRAIVPVVKGHDVIAQAQSGTGKTATFSISILQ 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     ++  + LIL PTRELA Q+       G   N+     +GG        KL+ 
Sbjct: 85  QLDMS---IKGTQALILAPTRELAQQIQKVVIALGDYMNIECHACVGGTNVREDMAKLQE 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR     ++I+I  +DEAD ML  GF   I ++  L+P   Q +
Sbjct: 142 GVHVVVGTPGRVYDMINRRAFRTDHIKIFCLDEADEMLSRGFKDQIYDVFQLLPQDTQVV 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+ +V++ F+++P RI V     T E I+  ++A   +  K   L       
Sbjct: 202 LLSATMPAEVLEVTKKFMRDPVRILVKRDELTLEGIKQFYIAVEKEEWKLDTLCDL--YE 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   +  + F+V A+HG+++Q+ R  ++  F+ G+ ++++ 
Sbjct: 260 TVTITQAVIFCNTRRKVDWLTEKMHAREFTVSAMHGDMEQKQREVLMKEFRSGSSRVLIT 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  ED++ +  IE
Sbjct: 320 TDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTTEDVRMLRDIE 379

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 380 QFYNTQIDEMPLNVADL 396


>gi|223056241|gb|ACM80366.1| vasa [Patiria miniata]
          Length = 730

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 124/387 (32%), Positives = 206/387 (53%), Gaps = 14/387 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  L P+V C V+ A Y KPTP+Q   IP++    D+   AQTG+GKTA+F+LP++ 
Sbjct: 279 SFEESTLCPEVKCNVVKAKYSKPTPVQKYGIPIISGGRDLMACAQTGSGKTAAFLLPIIN 338

Query: 62  IL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +          +  + P+ +I+ PTREL +Q+ +   K+ +   L   ++ GG     Q
Sbjct: 339 GMLSDGVTGSSFSEFQEPQCIIVSPTRELTSQIYNEAYKFARGTMLRPVVIYGGTSVGHQ 398

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            +++ +G  +L+ TPGR++D  NRG++ ++  + LV+DEADRMLDMGF P ++ +  L  
Sbjct: 399 LREVGKGCHLLVATPGRLMDFINRGRIKVSKCKYLVLDEADRMLDMGFGPEMEKLIYLPD 458

Query: 176 FT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQ L+FSAT   E+Q+ +  +L++   + V         I    +       K 
Sbjct: 459 MPKKGERQCLMFSATFPQEVQQKAAEYLEDYLFLTVGRVGGATPDITQTIIEVGKYDKK- 517

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                  +   +  +  ++F   K+    L   L ++     +IHG+ +QR R + L++F
Sbjct: 518 --EKLSEMLMNNPDERTLVFTETKRGADFLATCLCQESLPATSIHGDREQREREEALADF 575

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-A 350
           + G  ++ VA+ +AARGLDI  V HV N+D+P+  E Y+HRIG TGR G  GKA +   A
Sbjct: 576 RSGRARISVATSVAARGLDISGVKHVVNYDMPSSIEEYVHRIGWTGRVGNLGKATSFYDA 635

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSS 377
             D ++  A+ K++      +   L +
Sbjct: 636 MSDSQNARALIKILADAQQDVPEFLEA 662


>gi|118366889|ref|XP_001016660.1| P68-like protein, putative [Tetrahymena thermophila]
 gi|89298427|gb|EAR96415.1| P68-like protein, putative [Tetrahymena thermophila SB210]
          Length = 699

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 130/425 (30%), Positives = 212/425 (49%), Gaps = 27/425 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKT-------------------IPLVLQRHDV 41
           + + +      ++  + D+ + +P PIQ +                     P+VL  HD+
Sbjct: 194 IKWNETKFPKYIMSVIEDSKFSEPMPIQAQYVTNKKQKKKYKMYECSFIPFPIVLSGHDL 253

Query: 42  CGIAQTGTGKTASFVLPM--LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY 99
            GIAQTG+GKT SF+LP       +        P  L+L PTRELA Q+ +   K+G   
Sbjct: 254 IGIAQTGSGKTLSFMLPALVHINAQDPVKPGEGPIALVLAPTRELANQIQEQCFKFGSKC 313

Query: 100 NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159
            ++   + GG P   Q K+L  G D++I TPGR++D      + +  +  LV+DEADRML
Sbjct: 314 KISSVCVYGGAPKIYQEKELRNGCDIVIATPGRLIDFLESNVIDLKRVTYLVLDEADRML 373

Query: 160 DMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
           DMGF P I+ I   +   RQTL+FSAT    +++++ +F                   + 
Sbjct: 374 DMGFEPSIRKIVGQIRPDRQTLMFSATWPQTVRRLALDFCHGDPIHIQIGDMENNVNNDI 433

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                    S+K   ++++L +       IIF   KK+  +L  +L+        IHG+ 
Sbjct: 434 DQQVEIIDKSQKYDRVKEILSTMTRSDKTIIFTQTKKDCDDLSKALQTDNIRNICIHGDK 493

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            QR R K++  FK G +  ++A+D+A+RGLD+ D+  V N+D P + E+Y+HR+GRTGRA
Sbjct: 494 SQRDRDKVMDLFKTGRVNTLIATDVASRGLDVKDIKLVINYDFPKQIEDYVHRVGRTGRA 553

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           G  GKA + + + + K      K+ ++ VD L  +   ++  L ++  A +     NN  
Sbjct: 554 GAQGKAISFLDQYEDK------KISKELVDVLKQNNQEISQDLLELSEANYKGNYSNNYN 607

Query: 400 PQKST 404
             +S+
Sbjct: 608 KNRSS 612


>gi|87118190|ref|ZP_01074089.1| ATP-independent RNA helicase DbpA [Marinomonas sp. MED121]
 gi|86165824|gb|EAQ67090.1| ATP-independent RNA helicase DbpA [Marinomonas sp. MED121]
          Length = 461

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 133/377 (35%), Positives = 198/377 (52%), Gaps = 10/377 (2%)

Query: 2   DFA---DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           +F+   D+ L  K+   + D G+   TPIQ +T+P +L  +D+   AQTG+GKT +F + 
Sbjct: 3   NFSHNLDIQLPTKLTALLSDLGFETFTPIQAQTLPSILSDNDILAQAQTGSGKTLAFAIG 62

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNK 117
           ML  +     R    + L++ PTRELA QV     K  +       L + G +PF  Q  
Sbjct: 63  MLMKINP---RYFGVQGLVMCPTRELADQVCKEIRKTARFLENIKVLSLCGGMPFGPQIG 119

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE GA +++ TPGR+L+H  +G L ++++  LV+DEADRMLDMGF+  I+ +    P  
Sbjct: 120 SLEHGAHIVVGTPGRLLEHVRKGTLRLDSLNTLVLDEADRMLDMGFVDSIRTLVESTPKK 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL+FSAT  + + K+S  F  NPK I+V       E+                     
Sbjct: 180 RQTLMFSATYPETIGKISAEFQHNPKTIKVEATQ---ESKPDIKQFFVKSNKDDKPYALM 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                   +  I+FCN K     +   L     S  AIHG+++QR R ++L  F   + +
Sbjct: 237 SAVRYQNPEQAIVFCNTKIECQTIADFLVDHKISAKAIHGDLEQRDRDQVLVQFSNASCR 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+D+ +V  V N+D     + + HRIGRTGRAG  G A  LV  +D   +
Sbjct: 297 ILVATDVAARGIDVKEVDTVINYDTTRDIDVHTHRIGRTGRAGNKGVAINLVTDKDTYKV 356

Query: 358 DAIEKLIEKKVDWLNGD 374
             IE   E + D+L  D
Sbjct: 357 KDIEDRFEIQADYLELD 373


>gi|330804668|ref|XP_003290314.1| hypothetical protein DICPUDRAFT_95112 [Dictyostelium purpureum]
 gi|325079564|gb|EGC33158.1| hypothetical protein DICPUDRAFT_95112 [Dictyostelium purpureum]
          Length = 706

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 131/428 (30%), Positives = 213/428 (49%), Gaps = 19/428 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           + F D+ L   ++  +  A Y KPTP+Q   +P++ +  D+   AQTG+GKTA+F+LP+ 
Sbjct: 232 ISFTDVDLGDVILSNIKYAKYTKPTPVQKSALPIIFKNRDLMACAQTGSGKTAAFLLPII 291

Query: 60  -----------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
                          + G  R   PR L+L PTRELA Q+ +   K+     +   ++ G
Sbjct: 292 SGILLDGAPEPPASYKPGVPRAAAPRALVLAPTRELAQQIYNEANKFSYGSPIQSVVIYG 351

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G     Q  +L++G D+L+ T GR++D   RG++ ++ I+ LV+DEADRMLDMGF P I+
Sbjct: 352 GAEVFNQINELDKGVDILVATTGRLVDLLLRGRVTLSKIKYLVLDEADRMLDMGFEPQIR 411

Query: 169 NITSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
            I           RQTL+FSAT   ++Q ++ +FL N   ++V    +T        +  
Sbjct: 412 QIIGDFDMPGSRDRQTLMFSATFPKQIQALASDFLSNYIFLKVGVVGTTQNI--TQRIEY 469

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
            ++  K   LL  +          +IF   K++   L   L  +GF    IHG++ Q  R
Sbjct: 470 VSEEEKNSYLLDYISGLNIDGALTLIFVETKRSCDTLTFFLNNRGFPATCIHGDLTQSER 529

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
              L +F       +VA+D+A+RGL IP+V  V N+D+P     Y+HRIGRTGRAG+ G 
Sbjct: 530 ENALHSFSSFQTPFLVATDIASRGLHIPNVMVVINYDLPTDVHIYVHRIGRTGRAGKKGL 589

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           + +   +++      + KL++     +      +   L  +       ++  +P   +S 
Sbjct: 590 SISFFNEKNKPVGGELLKLLKASNQEIPDWFEKMVHQLRLVKGPSTQKSKYESPF-NRSY 648

Query: 405 GFDRRKKN 412
              R  +N
Sbjct: 649 NNHRDDRN 656


>gi|322490766|emb|CBZ26030.1| putative DEAD box RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 658

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 101/383 (26%), Positives = 170/383 (44%), Gaps = 5/383 (1%)

Query: 2   DFADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           D+  L L+P +V A+  +  + + TPIQ + IP  LQ  D+   A+TG GKT +F++P++
Sbjct: 164 DYKSLQLNPHIVSALEQEFKFRELTPIQSRCIPAALQGRDLLAEAKTGAGKTLAFLIPIV 223

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL---TVALLIGGIPFEAQNK 117
            I+ +   R       I+           +        +     T    IGG     +  
Sbjct: 224 EIVCRSGFRPSNGTAAIIIGPTRELCLQIEGVLLKLLKHFNGSLTFLCCIGGQSRNQEGF 283

Query: 118 KLERGADVLICTPGRI-LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           KL  G  +++ +PGR+             N+ +L +DEADR+LD GF   ++ I +L+P 
Sbjct: 284 KLANGVMIVVASPGRLLDHLKLTTDWHTKNLLLLAVDEADRVLDNGFEEDMREIVALLPK 343

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT LFSAT T  +++++                    T++          S++  L+ 
Sbjct: 344 NRQTFLFSATQTTRVEQLARISFHKTPIFISMKSKKDKATVDTLEQGYVVCASEQRLLVL 403

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                ++  K  I+F + + +V   C           A HG   Q  R      F     
Sbjct: 404 YHFVKKNLKKKVIVFFSSRNSVSFHCELFNYIDVPCIAFHGKQKQHQRSATYMQFCNAPS 463

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++  +D+AARGLDIP+V  +  FD P+    Y+HR+GRT RAGR G A   +  ++   
Sbjct: 464 GVLFTTDVAARGLDIPEVDWIVQFDPPDDPVKYVHRVGRTARAGRCGNALMFLLPQEELF 523

Query: 357 IDAIEKLIEKKVDWLNGDLSSLN 379
           +  +    + KV+    D++ + 
Sbjct: 524 LKYLYDDAKVKVNEYTFDMTKIK 546


>gi|308473123|ref|XP_003098787.1| CRE-VBH-1 protein [Caenorhabditis remanei]
 gi|308268083|gb|EFP12036.1| CRE-VBH-1 protein [Caenorhabditis remanei]
          Length = 686

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 130/393 (33%), Positives = 203/393 (51%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++ G  P V+  V  +GY KPTP+Q  +IP +L   D+   AQTG+GKTA+F+LP++ 
Sbjct: 170 NFSEAGFGPAVMENVTHSGYTKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQ 229

Query: 62  ILEKGRA------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIG 108
            +  G              R   P  L+L PTRELA Q+     K+    N  T  L  G
Sbjct: 230 HIMAGGPEMIKTPAFTNGRRTYFPSALVLSPTRELAIQIHKEASKFSYKTNLQTAILYGG 289

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
              +  Q  +L  GA +LI TPGR++D   +G + +     LV+DEADRMLDMGF P I+
Sbjct: 290 RENYRDQVNRLRSGAHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIR 349

Query: 169 NIT---SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
            I          R T +FSAT   E+Q ++++FL+            +        +   
Sbjct: 350 KIVGQGMPAKTARTTAMFSATFPKEIQLLAKDFLKENYVFLAVGRVGSTSENIEQRLLWV 409

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            +  K+  L+ ++L ++D+    ++F   K+    L + L +Q     +IHG++ Q  R 
Sbjct: 410 NEMEKRQNLM-EILMNEDSTNLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERE 468

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P  ++ Y+HRIGRTGR G  G A
Sbjct: 469 RNLEMFRSGQFPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIA 528

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            +    ++      ++ LI +    +   L  +
Sbjct: 529 TSFFNDKNRGIGRDLKNLILEANQEVPDWLHQV 561


>gi|57111967|ref|XP_548903.1| PREDICTED: similar to ATP-dependent RNA helicase ROK1 isoform a
           [Canis familiaris]
          Length = 598

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 106/435 (24%), Positives = 200/435 (45%), Gaps = 15/435 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     ++ +++  +LDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 161 TFQQLDQEYKINSRLLQNILDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 220

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L++   +      LI+ PTRELA Q+     K  +        +    +  +   
Sbjct: 221 PILMQLKQPTNKGFR--ALIISPTRELANQIHRELVKISEGTGFRIHMIHKAAVAAKKFG 278

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++    +    ++  ++E LV+DE+D++ + G   +        
Sbjct: 279 PKSSKKFDILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIF 338

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSA    ++++  +  L N   + +   +S  ET+E   +   ++  K
Sbjct: 339 LACTSHKVRRAMFSAIFAYDVEQWCKLNLDNVITVSIGARNSAVETVEQELLFVGSETGK 398

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +  +     ++F    +    L H L  +G +V  IH +  Q+ R   + +
Sbjct: 399 LLAMRELVKKGFNPP--VLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHS 456

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   
Sbjct: 457 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFT 516

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           ++D   + ++  +I++    +   +      L K          +   I      F  + 
Sbjct: 517 EDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPKYFLEKA 576

Query: 411 KNYSSQKSHIPLKES 425
           KN   + +    K+ 
Sbjct: 577 KNKRKKVTAQNSKKK 591


>gi|255087672|ref|XP_002505759.1| predicted protein [Micromonas sp. RCC299]
 gi|226521029|gb|ACO67017.1| predicted protein [Micromonas sp. RCC299]
          Length = 426

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 95/376 (25%), Positives = 161/376 (42%), Gaps = 3/376 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL +L  
Sbjct: 47  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLAVLQQ 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE     V                   + F  Y    N+ V      I  +    K +  
Sbjct: 107 LEPVPGEVGALILCHTRELAYQIKHEFERFSAYLPAVNVAVIFGGVNIKQQKAELKEKPP 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + ++           +    L      ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 167 SIIVATPGRCKALAKDGDISLKQCGHFILDECDKMLEQLDMRADVQEIFKMTPHDKQVMM 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+ +P  I V+  +               +  K        L   
Sbjct: 227 FSATLSKEIRPVIKKFMNDPMEIYVDDETKLTLHGLVQHYIKLTEAEKNR--KLNDLLDA 284

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +    L   L +  F   AIH  + Q  R+    +FKEG  +++VA+
Sbjct: 285 LMFNQVVIFVKSVQRCTYLDKLLTECNFPSIAIHRGMSQEERLARYKSFKEGNKRILVAT 344

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDAIE 361
           DL ARG+DI  V  V N+D+P+ A+ Y+HR+GR GR G  G A T + + ED   +DA+ 
Sbjct: 345 DLVARGIDIERVNIVINYDMPDGADTYLHRVGRAGRFGTKGLAITFLSSDEDTAVLDAVH 404

Query: 362 KLIEKKVDWLNGDLSS 377
              E ++  L   + +
Sbjct: 405 ARFEVEIKELPEQIDT 420


>gi|73966874|ref|XP_852958.1| PREDICTED: similar to ATP-dependent RNA helicase ROK1 isoform a
           [Canis familiaris]
          Length = 598

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 107/435 (24%), Positives = 201/435 (46%), Gaps = 15/435 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     ++ +++  +LDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 161 TFQQLDQEYKINSRLLQNILDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 220

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L++   +      LI+ PTRELA Q+     K  +        +    +  +   
Sbjct: 221 PILMQLKQPTNKGFR--ALIISPTRELANQIHRELVKISEGTGFRIHMIHKAAVAAKKFG 278

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++    +    ++  ++E LV+DE+D++ + G   +        
Sbjct: 279 PKSSKKFDILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIF 338

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT   ++++  +  L N   + +   +S  ET+E   +   ++  K
Sbjct: 339 LACTSHKVRRAMFSATFAYDVEQWCKLNLDNVITVSIGARNSAVETVEQELLFVGSETGK 398

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +  +     ++F    +    L H L  +G +V  IH +  Q+ R   + +
Sbjct: 399 LLAMRELVKKGFNPP--VLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHS 456

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   
Sbjct: 457 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFT 516

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           ++D   + ++  +I++    +   +      L K          +   I      F  + 
Sbjct: 517 EDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPKYFLEKA 576

Query: 411 KNYSSQKSHIPLKES 425
           KN   + +    K+ 
Sbjct: 577 KNKRKKVTAQNSKKK 591


>gi|308081024|ref|NP_001183303.1| hypothetical protein LOC100501699 [Zea mays]
 gi|238010618|gb|ACR36344.1| unknown [Zea mays]
          Length = 643

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 131/391 (33%), Positives = 200/391 (51%), Gaps = 16/391 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
            FA++ L   +   +    YVKPTP+Q   IP+ +   D+   AQTG+GKTA+F  P++ 
Sbjct: 176 TFAEIDLGDALNENIRRCKYVKPTPLQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIIS 235

Query: 61  -------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                          R   P  LIL PTREL+ Q+ +   K+     + V +  GG P  
Sbjct: 236 GILKSPKPHQRSRSTRTACPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGGAPIT 295

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN---- 169
            Q ++LERG ++L+ TPGR++D   R ++ +  I+ L +DEADRMLDMGF P I+     
Sbjct: 296 NQLRELERGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEG 355

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           +       RQT+LFSAT   E+Q+++ +FL +   + V    S+ + I            
Sbjct: 356 MDMPQRGERQTMLFSATFPKEIQRMAADFLADYIFLAVGRVGSSTDLIVQRVEFVLDSDK 415

Query: 230 KKC----ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
           +         Q+   +       ++F   K+    L   L + GF   +IHG+  Q+ R 
Sbjct: 416 RSYLMDLIHAQKANGTHGKHALTLVFVETKRGADALEDWLFRNGFPATSIHGDRTQQERE 475

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L +FK G   ++VA+D+AARGLDIP V HV NFD+PN  ++Y+HRIGRTGRAG+ G A
Sbjct: 476 HALRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLA 535

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
                + +      +  L+++    +   L 
Sbjct: 536 TAFFNESNTTLARPLSDLMKEANQEVPKWLD 566


>gi|171847235|gb|AAI61473.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Xenopus (Silurana)
           tropicalis]
          Length = 640

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 118/391 (30%), Positives = 198/391 (50%), Gaps = 9/391 (2%)

Query: 3   FADL--GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           F+ L   ++   + AV + G+   T IQ K I  +L+  DV   A+TG+GKT +F++P +
Sbjct: 147 FSSLADSVNENTLRAVTEMGFTHMTEIQHKAIRPLLEGRDVLAAARTGSGKTLAFLIPAI 206

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +           LIL PTRELA Q     ++   ++  T  L++GG    A+ +KL
Sbjct: 207 ELVYKLKFMPRNGTGVLILSPTRELAMQTYGVLKELMAHHVHTFGLIMGGSNRSAEAQKL 266

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             G ++++ TPGR+LDH       +  N++ LVIDEADR+L++GF   ++ I +L+P  R
Sbjct: 267 ANGVNIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEQEMKQIINLLPKRR 326

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT T +++ ++   L+               T++          S+K  LL   
Sbjct: 327 QTMLFSATQTRKVEDLARISLKKEPLYVGVDDHKETATVDGLEQGYVVCPSEKRFLLLFT 386

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  ++F +   +V      L      V AIHG   Q  R      F      +
Sbjct: 387 FLKKNRKKKMMVFFSSCMSVKYHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNAESGI 446

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR--AGRHGKAFTLVAKEDIKH 356
           ++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++  
Sbjct: 447 LLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGIDGR-GHALLILRPEELGF 505

Query: 357 IDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
           +  ++  K+   + ++    +S +   LEK+
Sbjct: 506 LRYLKQAKVPLSEFEFSWSKISDIQTQLEKL 536


>gi|62857681|ref|NP_001016776.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Xenopus (Silurana)
           tropicalis]
 gi|89270404|emb|CAJ82546.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Xenopus (Silurana)
           tropicalis]
          Length = 640

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 118/391 (30%), Positives = 198/391 (50%), Gaps = 9/391 (2%)

Query: 3   FADL--GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           F+ L   ++   + AV + G+   T IQ K I  +L+  DV   A+TG+GKT +F++P +
Sbjct: 147 FSSLAESVNENTLRAVTEMGFTHMTEIQHKAIRPLLEGRDVLAAARTGSGKTLAFLIPAI 206

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +           LIL PTRELA Q     ++   ++  T  L++GG    A+ +KL
Sbjct: 207 ELVYKLKFMPRNGTGVLILSPTRELAMQTYGVLKELMAHHVHTFGLIMGGSNRSAEAQKL 266

Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             G ++++ TPGR+LDH       +  N++ LVIDEADR+L++GF   ++ I +L+P  R
Sbjct: 267 ANGVNIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEQEMKQIINLLPKRR 326

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT T +++ ++   L+               T++          S+K  LL   
Sbjct: 327 QTMLFSATQTRKVEDLARISLKKEPLYVGVDDHKETATVDGLEQGYVVCPSEKRFLLLFT 386

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  ++F +   +V      L      V AIHG   Q  R      F      +
Sbjct: 387 FLKKNRKKKMMVFFSSCMSVKYHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNAESGI 446

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR--AGRHGKAFTLVAKEDIKH 356
           ++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++  
Sbjct: 447 LLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGIDGR-GHALLILRPEELGF 505

Query: 357 IDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
           +  ++  K+   + ++    +S +   LEK+
Sbjct: 506 LRYLKQAKVPLSEFEFSWSKISDIQTQLEKL 536


>gi|213402959|ref|XP_002172252.1| ATP-dependent RNA helicase rok1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000299|gb|EEB05959.1| ATP-dependent RNA helicase rok1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 519

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 113/419 (26%), Positives = 202/419 (48%), Gaps = 9/419 (2%)

Query: 14  CAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMP 73
             + + G+ + +PIQ   IP + QR DV   A TG+GKT +++ P++  L+    +    
Sbjct: 90  QNLHEQGFKQASPIQQYAIPAIEQRRDVLACAPTGSGKTVAYLYPIVRSLQA--HKDGGF 147

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R +I+ PTRELA QV    ++     +L             +     R    +  +    
Sbjct: 148 RAVIVLPTRELAEQVNRQLKRLIARTDLKAIFYDKSNEKIQEKNTKLREIYDICVSTPMR 207

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL-FSATMTDELQ 192
           L H  +  L + N+E LV+DEADR+ +  F+     + S     R     FSAT+   ++
Sbjct: 208 LVHAIKSGLSLANVEFLVLDEADRLFEKNFVEQTDGVLSACTHPRICKCLFSATLPSTVE 267

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           ++++    +P RI V    +   TIE   +    + SK   + +Q++   +     +IF 
Sbjct: 268 ELAKTVAHDPLRIIVGQKDAATSTIEQKLLFVGNEASK-LVIFRQMVSDGEIQPRVVIFV 326

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
                   L   L   G  V AIHG + Q  R ++++ F++G + +++A+DL ARG+D  
Sbjct: 327 QDIDRAKALYTELMFDGIHVAAIHGELPQMKRDEVMARFRKGEVWVLIATDLLARGIDFN 386

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
            V  V N+D P    +YIHRIGRTGRAG  G+A T   KED +++  +  +++     + 
Sbjct: 387 GVKLVINYDFPQSVHSYIHRIGRTGRAGHGGRAITFYTKEDSEYLKLVAGVMKSSGCEVP 446

Query: 373 GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKL 431
             + +L  P +++      HA     I  +S+ +DR K+    +     +++++K++ +
Sbjct: 447 EWIMALPKPTKQLKKKLKYHAPDRKRITTRSS-YDRHKEVRKKE----AIQQAKKLASI 500


>gi|195429198|ref|XP_002062651.1| GK17652 [Drosophila willistoni]
 gi|194158736|gb|EDW73637.1| GK17652 [Drosophila willistoni]
          Length = 782

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 118/429 (27%), Positives = 215/429 (50%), Gaps = 5/429 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +GL+  +V  +   GY  PTPIQ KTIP++L+  DV  +A+TG+GKTA F++P+   L++
Sbjct: 1   MGLNQDLVKGITKRGYKVPTPIQRKTIPMILEGRDVVAMAKTGSGKTACFLIPLFERLQR 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
                   R LIL PTRELA Q     ++ G+   L   L++GG   ++Q   +    DV
Sbjct: 61  REPTKGA-RALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHTCPDV 119

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           ++ TPGR L       L +N+IE +V DEADR+ +MGF   +      +P +RQ ++FSA
Sbjct: 120 IVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQMVMFSA 179

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           T+   L   +   L +P  I ++  S   +++            +  +L+  L       
Sbjct: 180 TLPKLLVDFARAGLSDPVLIRLDVESKLPDSL-ALKFLYCRPDDRYTSLIVLLKYVIPEK 238

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              ++F   + +V  +   L +   S  +++ ++D  +R    + F    + +++ +D+A
Sbjct: 239 SQTVVFAGTQHHVELISFILTQSNISNTSVYSSLDPAARKINTAKFVSKKVSVLIVTDVA 298

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARG+DIP + +V N   P + + ++HR+GR  RAGR G AF++ + +D  H+  +   + 
Sbjct: 299 ARGIDIPSLDYVINVHFPGKPKLFVHRVGRCARAGRSGTAFSIFSTDDTAHLLDLHLFLN 358

Query: 366 KK--VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLK 423
           +   +D  N  + ++   L + +       +K++ I       +   K Y S +      
Sbjct: 359 RPFNIDD-NIAIGTVPQDLLEEEHLTVTEIKKSHHIAGVLRTSENAYKKYLSSRPVASTD 417

Query: 424 ESEKISKLQ 432
            + ++ K++
Sbjct: 418 ANSRVKKIK 426


>gi|328856886|gb|EGG06005.1| hypothetical protein MELLADRAFT_36393 [Melampsora larici-populina
           98AG31]
          Length = 668

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 126/452 (27%), Positives = 200/452 (44%), Gaps = 18/452 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ +S   +  +  A Y K TPIQ  ++P  L   DV G A+TG+GKT +F++P+L +
Sbjct: 1   FTDIPISAATLKGLQAAKYTKLTPIQALSLPRALMGKDVLGAARTGSGKTLAFLIPVLEM 60

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         L++ PTRELA Q+ +     GK ++ +  L+IGG   E + ++L +
Sbjct: 61  LYRSKWGHMDGLGALVISPTRELAVQIFEVLRSIGKFHSFSAGLVIGGKSLEDERERLSK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++                  +N+++LV+DEADR+LDMGF   I  I S +P +RQTL
Sbjct: 121 MNILIATPGRLQQHLEQTTGFDCDNLQVLVLDEADRILDMGFSNSINAIISSLPASRQTL 180

Query: 182 LFSATMTDELQKVSE-----NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           LFSAT T  ++ ++      +      R        T     H         SK   L  
Sbjct: 181 LFSATQTKSVKDLARLSLSEDPEYVAARETGVDRDLTTPKELHQSYMVIDLQSKMDYLWT 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L           +   ++   V       + G  +  +HG   Q  R++I   F     
Sbjct: 241 FLKTHLKNKMIVFLSSCKQVRFVYETFRHMRPGMPLLHLHGKQKQTKRLEIYERFSSSPE 300

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             + A+D+AARGLD P +  V   D P   + Y+HR+GRT R    GKA   +   +   
Sbjct: 301 ACLFATDIAARGLDFPSIDWVVQADCPEDLDTYVHRVGRTARYQSGGKALIFLLPSE--- 357

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ-KSTGFDRRKKNYSS 415
               E+ +  K +    ++  + P   +    QH    +    P  K  G    ++ + S
Sbjct: 358 ----EEGMVSKWEERGIEVKKVKPNDSRKQTIQHKLQAQMFKFPDIKFLG----QRAFIS 409

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
               I L+ ++KI KL Q      A+SLG  G
Sbjct: 410 YVRSIYLQRNKKIFKLDQLDLTAFAESLGLPG 441


>gi|319644991|ref|ZP_07999224.1| YqfR protein [Bacillus sp. BT1B_CT2]
 gi|317392800|gb|EFV73594.1| YqfR protein [Bacillus sp. BT1B_CT2]
          Length = 439

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 131/444 (29%), Positives = 214/444 (48%), Gaps = 20/444 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L P ++ AV   G+ +PT IQ + IP  L+     G +QTGTGKT +++LP+L+
Sbjct: 5   KFEMYDLKPFIIEAVHHLGFYEPTDIQKRLIPAALKGESAIGQSQTGTGKTHAYLLPLLS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVAD----NFEKYGKNYNLTVALLIGGIPFEAQNK 117
            ++         + +I  PTRELA Q+        +  G +  +     IGG   +    
Sbjct: 65  RIDP---EKEFVQVVITAPTRELANQIHQEVLKITKFLGPDEAIRSKCFIGGTDKQKSID 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+    +++ TPGRI D      L ++     VIDEAD MLDMGF+  +  I S +P  
Sbjct: 122 KLKTQPHLVVGTPGRIADLIREQALDVHKAGSFVIDEADLMLDMGFLEDVDFIGSHMPEG 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+ ++L+   + ++ NP+   V     TAE IEH  + +  +   +      
Sbjct: 182 LQMLVFSATIPEKLKPFLKKYMANPRYAHVEPKHITAEKIEHVLIPSRHRDKNEL---LL 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            + +       I+F N K     +   L  +G  V  +HG +  R R K++    +    
Sbjct: 239 EVMTHLNPYLAIVFANTKTTADEIAAYLTDKGMKVGLLHGGLTPRERKKVMKQIGDLEFT 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++A+DLAARG+DI  V HV N+++P+  + Y+HR+GRT RAG  G A T     D    
Sbjct: 299 YIIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGTSGTAMTFYDTSDE--- 355

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP-----IPQKSTGFDRRKKN 412
           DA+ KL +  + + N  +       +KID  +    RK  P     + ++     R+ K 
Sbjct: 356 DALVKLEQMGIVFENMRIEKGE--WKKIDDRKRRQNRKRTPDETDEVAKRLVKKPRKVKP 413

Query: 413 YSSQKSHIPLKESEKISKLQQDIQ 436
              +K    +++ ++  K +Q  +
Sbjct: 414 GYKKKMQTEIQKIKRQQKRKQFRK 437


>gi|77361885|ref|YP_341460.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76876796|emb|CAI88018.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 434

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 144/418 (34%), Positives = 230/418 (55%), Gaps = 16/418 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++LGL P+++  + D  Y +PTPIQ K IP VL   D+   A TG+GKTA+F LP+L 
Sbjct: 9   TFSELGLIPELLARLTDLEYTQPTPIQAKAIPSVLAGSDLIAGANTGSGKTATFALPILQ 68

Query: 62  ILEKGR------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113
            +   +      ++      LIL PTRELA QVAD+ + Y  N+N  +    + GG+   
Sbjct: 69  KMFLEQGSKSAASKGNFVTGLILVPTRELATQVADSVKSYSANFNGAIKTIAVFGGVSVN 128

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L  GAD+++ TPGR+LD  +   + ++ +  LV+DEADRML +GF   +  + +L
Sbjct: 129 TQMQALRGGADIIVATPGRLLDLISSNAIKLDKLNTLVLDEADRMLSLGFTEELAELLAL 188

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  +QT+LFSAT  ++++ ++++ L +P  I+V +     +         ++    +  
Sbjct: 189 MPAKKQTMLFSATFPEQVKLLTQDLLNDPVEIQVQS-----KDESTLVQRVFSVNKGEKT 243

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            +   L      +  +IF N KK+  +L   LEK+G +    HG+  Q  R +++  FK 
Sbjct: 244 TVLAHLIKTHKWRQALIFVNAKKDCEHLAQKLEKRGVNAQVFHGDKGQSERTRVIEKFKA 303

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I++++A+D+AARGLDI  +  V NF++P    +Y+HRIGR+GRAG  G A +LV  ED
Sbjct: 304 GEIEVLIATDIAARGLDIEKLPVVINFNLPRSPADYMHRIGRSGRAGEVGLALSLVDYED 363

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           + H   IEK  + K+      ++        +D AQ     K    P+  TG  + KK
Sbjct: 364 LHHFKIIEK--KNKLRLEREQVAGFAVNQANVDAAQALKNEKPMAKPE-GTGKKKNKK 418


>gi|224080444|ref|XP_002190335.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19 [Taeniopygia
           guttata]
          Length = 503

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 104/382 (27%), Positives = 179/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 117 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 176

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E G    + P+ L L PT ELA Q     E+ G  Y               + +K+
Sbjct: 177 LSRVEPGN---KYPQCLCLSPTYELALQTGKVIEQMGNFYPELKLAYAVRGNKLERGQKI 233

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 234 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRDCQ 293

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V    +  K  AL    +
Sbjct: 294 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNRDEKFRALC--NI 351

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L ++G  V  + G +    R  ++  F+EG  +++
Sbjct: 352 YGAITIAQAMIFCHTRKTAGWLAAELSREGHQVALLSGEMMVEQRAAVIERFREGKEKVL 411

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 412 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAINMVDSKH 471

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 472 SMNILNRIQEHFNKKINKLDTD 493


>gi|83648397|ref|YP_436832.1| superfamily II DNA/RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83636440|gb|ABC32407.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 593

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 140/379 (36%), Positives = 216/379 (56%), Gaps = 8/379 (2%)

Query: 17  LDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTL 76
            D GY +P+PIQ ++IPL+LQ   + G+AQTGTGKTA+F LP+L  L+    +++ P+ +
Sbjct: 28  KDVGYEQPSPIQEQSIPLLLQGESILGVAQTGTGKTAAFALPLLERLDP---KIQSPQII 84

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLERGADVLICTPGRILD 135
           +L PTRELA QVA+ F+ Y +       L I  G     Q + L+RG  V++ TPGR+LD
Sbjct: 85  VLAPTRELAIQVAEAFKSYSRYLPDFTVLPIYGGQDMRGQLRSLKRGVQVIVGTPGRVLD 144

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
           H  R  L ++ I  +V+DEAD ML MGFI  ++ I S  P   Q  LFSATM   +++V+
Sbjct: 145 HLQRKSLDLSQIRAVVLDEADEMLRMGFIDDVEEILSNAPGECQYALFSATMPPAIKRVA 204

Query: 196 ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
           E +L+  K + +   +ST E I    +     +          +++ + M   IIF   K
Sbjct: 205 EKYLKGAKEVRIAAKTSTVERISQHVLMVDNSHKLDALTRVLEVENFEGM---IIFVRTK 261

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
                L   L+ +G++  A++G+  Q+ R + +   K+G + ++VA+D+AARGLD+  +G
Sbjct: 262 SATTELAEKLQARGYAAEALNGDQTQKIREQTIDRLKKGRLDIVVATDVAARGLDVERIG 321

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDL 375
            V N+D+P   E Y+HRIGRTGRAGR GKA    A ++ + + AIE   ++ +       
Sbjct: 322 LVLNYDIPYDTEAYVHRIGRTGRAGREGKAILFAAPKERRLLRAIESATKQPLTPYEAP- 380

Query: 376 SSLNPPLEKIDIAQHNHAR 394
           S+     ++I   Q N  R
Sbjct: 381 SAEKISEQRIQQFQENLHR 399


>gi|296117857|ref|ZP_06836440.1| putative ATP-dependent RNA helicase [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969088|gb|EFG82330.1| putative ATP-dependent RNA helicase [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 450

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 134/434 (30%), Positives = 211/434 (48%), Gaps = 15/434 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   +V  +   G   P PIQ   IP  L   D+ G   TG+GKT +F LPM+ 
Sbjct: 3   TFADLGLPRPIVSVLAQQGITSPFPIQEAAIPDALAGKDILGRGPTGSGKTFTFGLPMIA 62

Query: 62  I-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                G ++   PR L+L PTRELA Q+    ++      L V  ++GG+      ++L 
Sbjct: 63  RLAGSGASKPGRPRGLVLAPTRELAIQIQQRLDEPANAMGLRVLSVVGGVNINNHIRQLA 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R  D+L+ TPGR  D  N+ KL +++  +  +DEAD+M DMGF+P ++ + +L P   Q 
Sbjct: 123 RPVDILVATPGRAQDLVNQKKLSLSDATLTALDEADQMADMGFLPQVKKLLALTPDNAQR 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++ K+   F+ +P         ++ +T++H       +  +   +L+    
Sbjct: 183 LLFSATLDGDVNKLVSRFMHDPVTHSTAPVQASVDTMKHYVFFVGEREDRNKVVLR---- 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K  V      L + G     +HG+  Q +R   L  F +G++ ++V
Sbjct: 239 IAAREGKTIMFMRTKHGVDRQAKKLRRAGIPAMGLHGDKGQNTRSTTLQGFADGSVSVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV  V + D P   + Y+HR GRT RAG  G   TLV  E     D +
Sbjct: 299 ATDIAARGIDVHDVSLVVHVDPPAEHKAYLHRAGRTARAGEAGSVVTLVMNEQR---DEV 355

Query: 361 EKLIEKK-VDWLNGDLSSLNPPLEKIDIAQHNHARKNN------PIPQKSTGFDRRKKNY 413
            KLI+K  VD    D+S+ + P     +A    A+         P  Q+ +    + K  
Sbjct: 356 AKLIDKAGVDAETIDISTDSSPAHNRTLATITGAQSPTGVALPEPGQQQQSAAKPQSKQP 415

Query: 414 SSQKSHIPLKESEK 427
             +      +  ++
Sbjct: 416 RGKSRSTSARSGQR 429


>gi|291237232|ref|XP_002738539.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 18-like
           [Saccoglossus kowalevskii]
          Length = 634

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 114/392 (29%), Positives = 202/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP- 58
            F+ L   +S   +  ++D G+   T IQ K+IP +L+  D+   AQTG+GKT +F++P 
Sbjct: 140 KFSSLADRVSELTLKGIVDMGFTHMTEIQSKSIPHLLEGRDLLAAAQTGSGKTLAFLIPC 199

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  + +           +I+ PTREL+ Q      +  K +  T  L++GG     ++KK
Sbjct: 200 IELLHKLKFMPRNGTGVIIISPTRELSMQTYGVLREVLKYHYHTFGLIMGGANRAEESKK 259

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G ++++ TPGR +    N  + +  N++ LVIDEADR+L++GF   ++ I  L+P  
Sbjct: 260 LGKGVNIVVATPGRLLDHLQNSPQFMYKNLQCLVIDEADRILEVGFEEEMKQIMKLLPKR 319

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+          +    T+E          S+K  LL  
Sbjct: 320 RQTMLFSATQTKKIENLARLSLKTQPVYVGVDDTKEKATVEGLEQGYVVCTSEKRFLLLF 379

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V   C  L      V +IHG   Q  R +    F   +  
Sbjct: 380 TFLKKNRRKKVMVFFSSCMSVKYHCELLNYIDLPVMSIHGRQKQTKRTQTFFQFCNASEG 439

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR--AGRHGKAFTLVAKEDIK 355
           +++ +D+AARGLDIP V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 440 ILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGIDGR-GHALLILRPEELG 498

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + ++    ++++   LE++
Sbjct: 499 FLRYLKNAKVPLSEFEFSWNKIANIQSQLERL 530


>gi|302691820|ref|XP_003035589.1| hypothetical protein SCHCODRAFT_65225 [Schizophyllum commune H4-8]
 gi|300109285|gb|EFJ00687.1| hypothetical protein SCHCODRAFT_65225 [Schizophyllum commune H4-8]
          Length = 397

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 210/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L P+++  +   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 25  NFDNMNLKPELLRGIYAYGFERPSAIQQRAIVPVVKGHDVIAQAQSGTGKTATFSISILQ 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     ++  + LIL PTRELA Q+       G   N+     +GG        KL+ 
Sbjct: 85  QLDMS---IKGTQALILAPTRELAQQIQKVVIALGDYMNIECHACVGGTVVREDIAKLQE 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L  +NI+I  +DEAD ML  GF   I  +  L+P   Q +
Sbjct: 142 GVHVVVGTPGRVHDMINRRALRTDNIKIFCLDEADEMLSRGFKDQIYEVFQLLPQDIQVV 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+ +V++ F++ P RI V     T E I+  ++A   +  K   L       
Sbjct: 202 LLSATMPAEVLEVTKKFMREPVRILVKRDELTLEGIKQFYIAVEREEWKLDTLCDL--YE 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   +  + F+V A+HG+++Q+ R  ++  F+ G+ ++++ 
Sbjct: 260 TVTITQAVIFCNTRRKVDWLTEKMHAREFTVSAMHGDMEQKQREVLMKEFRSGSSRVLIT 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 320 TDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTTDDVRMLRDIE 379

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 380 QFYNTQIDEMPLNVADL 396


>gi|299115354|emb|CBN74178.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 923

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 121/379 (31%), Positives = 195/379 (51%), Gaps = 9/379 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI----- 62
           + PK V A+   G  K TP+Q  T   +L   D+ G ++TGTGKT +F LP++       
Sbjct: 263 VDPKTVAALKARGIEKFTPVQAITYDHILSGRDIIGKSRTGTGKTIAFGLPVIQHLGRFA 322

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               ++   R R PR L++ PTRELA QV    E  G  + L   +  GG  +  Q + L
Sbjct: 323 EDHQQRTYQRGRSPRFLVVCPTRELARQVYGELETLGSTFGLKADVFHGGAAYGPQMRSL 382

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ-NITSLVPFTR 178
             G D+L+ TPGRI+DH  RG L ++++   V+DEAD ML+MGF   I+   + +     
Sbjct: 383 SDGLDILVATPGRIMDHLQRGALDLSDVRHAVLDEADEMLNMGFADDIETIFSYVDVKEC 442

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT+   ++ ++  +  NP  ++               ++       + ++L+ +
Sbjct: 443 QVLLFSATVPSWVRNIANKYTANPLTVDAVGKHVNKLATTVKHLSIEVSSRHRSSMLEDI 502

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +       + I+F N K     L      +  +   +HG+I Q  R + +  F+    Q+
Sbjct: 503 ITYYGKGSHAIVFTNSKAECDELADGQTFKTLTSQVLHGDISQHQRDQTIKAFRAKGFQV 562

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+  V  +  P   ++Y+HR GRTGRAGR G A TL A+ +I+ I 
Sbjct: 563 LVATDVAARGIDVSDIDLVVQYRPPRDPDSYVHRSGRTGRAGRPGVAVTLYAENEIRDIR 622

Query: 359 AIEKLIEKKVDWLNGDLSS 377
            IE+ + +   +  G + S
Sbjct: 623 KIEQGVGQGFRFERGAVPS 641


>gi|328869570|gb|EGG17948.1| DEAD/DEAH box helicase [Dictyostelium fasciculatum]
          Length = 631

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 134/395 (33%), Positives = 206/395 (52%), Gaps = 26/395 (6%)

Query: 2   DFADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            FA++ L  +++  + +A G  KPTPIQI+ +P+ L   D+ GIA TG+GKT  F LPM+
Sbjct: 186 SFAEMKLPREIIRYLKEAKGIKKPTPIQIQGLPVALSGRDMIGIAFTGSGKTLVFALPMV 245

Query: 61  TILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYG------KNYNLTVALLIGG 109
            +      R+ +     P  LI+ P+RELA Q  D            + + L   L IGG
Sbjct: 246 LLAMDAEKRLPIEAGEGPFGLIICPSRELARQTYDLVNALSDAIKKERGFELRTLLAIGG 305

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           I    Q    +RG  +++ TPGR++D  N+ ++ +   + L +DEADR++D+GF   I+ 
Sbjct: 306 IDMGEQEHLFKRGIHMIVATPGRLIDLLNKRRVSLAYCKYLGLDEADRLIDLGFEDDIRT 365

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           +       RQTLLFSATM  ++Q     F ++     V      A       +       
Sbjct: 366 VMDYFQGQRQTLLFSATMPKKIQT----FARSALVRPVEVNVGRAGAANLDVIQEVEYVK 421

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           ++  ++  L   Q T    +IFC  KK+V ++   L  +     A+HG+  Q  R   + 
Sbjct: 422 QESKIVYLLECLQKTAPPVLIFCENKKDVDDIHEYLLLKQVEAVAVHGDKSQEERDTAIK 481

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK+G   ++VA+D+A++GLD PD+ HV NFD+P   ENYIHRIGRTGR G+ G A T +
Sbjct: 482 AFKDGKKDVLVATDVASKGLDFPDIQHVINFDMPKEIENYIHRIGRTGRCGKTGVATTFI 541

Query: 350 AKE-------DIKHIDAIEKLIEKKVDWLNGDLSS 377
            K        D+KH+  IE   ++KV  +  ++  
Sbjct: 542 NKNQSESVLLDLKHL-LIES--KQKVPQVLLEIQD 573


>gi|67624743|ref|XP_668654.1| DEAD box polypeptide, Y chromosome-related [Cryptosporidium hominis
           TU502]
 gi|54659828|gb|EAL38390.1| DEAD box polypeptide, Y chromosome-related [Cryptosporidium
           hominis]
          Length = 702

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 126/395 (31%), Positives = 197/395 (49%), Gaps = 21/395 (5%)

Query: 2   DFADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F +L G+   ++  +    Y +PTP+Q  +IP VL   D+   AQTG+GKTA+F+ P++
Sbjct: 201 SFMELEGIHEILLDNIRRVKYERPTPVQKFSIPTVLNGRDLMACAQTGSGKTAAFLFPIV 260

Query: 61  TILEKG------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
             +                 R+  P  L+L PTRELA Q  +   K+     +   +L G
Sbjct: 261 MKMLNDGPPPTPQQSSLRIKRMAYPVALVLSPTRELAIQTYEESRKFCFGTGIRTNVLYG 320

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G    +Q   L+RG+D+++ TPGR+ D  +RGK+ +  I+ L++DEADRMLDMGF P I+
Sbjct: 321 GSEVRSQIMDLDRGSDIIVATPGRLRDLIDRGKVNLKLIKFLILDEADRMLDMGFAPQIR 380

Query: 169 NITSLVPFTR-----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
            I             QT++FSAT   E+Q+++++FL N   + V        T       
Sbjct: 381 EIVEDSEMPHSLDGRQTVMFSATFPREIQQLAKDFLHNYIFLTVGRVG---ATSGSIVQR 437

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
                      L   L  +      ++F   K+    +   L  Q F   +IHG+  Q+ 
Sbjct: 438 VVYAEEDHKPRLLVKLLLEQGEGLTVVFVEMKRRADQIEDFLIDQNFPAVSIHGDRSQQE 497

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L  F+ G   ++VA+D+AARGLDIP++ HV N D+P   ++Y+HRIGRTGRAG  G
Sbjct: 498 REHALRLFRSGQRPILVATDVAARGLDIPNITHVINLDMPCNIDDYVHRIGRTGRAGNTG 557

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            A + V + +   +  +   +E+           +
Sbjct: 558 LATSFVNESNKPILRDLLAALEESGQDAPEWFQDM 592


>gi|66357412|ref|XP_625884.1| Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+HELICc)
           [Cryptosporidium parvum Iowa II]
 gi|46226846|gb|EAK87812.1| Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+HELICc)
           [Cryptosporidium parvum Iowa II]
 gi|323510023|dbj|BAJ77905.1| cgd4_3000 [Cryptosporidium parvum]
          Length = 702

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 126/395 (31%), Positives = 197/395 (49%), Gaps = 21/395 (5%)

Query: 2   DFADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F +L G+   ++  +    Y +PTP+Q  +IP VL   D+   AQTG+GKTA+F+ P++
Sbjct: 201 SFMELEGIHEILLDNIRRVKYERPTPVQKFSIPTVLNGRDLMACAQTGSGKTAAFLFPIV 260

Query: 61  TILEKG------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
             +                 R+  P  L+L PTRELA Q  +   K+     +   +L G
Sbjct: 261 MKMLNDGPPPTPQQSSLRIKRMAYPVALVLSPTRELAIQTYEESRKFCFGTGIRTNVLYG 320

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G    +Q   L+RG+D+++ TPGR+ D  +RGK+ +  I+ L++DEADRMLDMGF P I+
Sbjct: 321 GSEVRSQIMDLDRGSDIIVATPGRLRDLIDRGKVNLKLIKFLILDEADRMLDMGFAPQIR 380

Query: 169 NITSLVPFTR-----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
            I             QT++FSAT   E+Q+++++FL N   + V        T       
Sbjct: 381 EIVEDSEMPHSLDGRQTVMFSATFPREIQQLAKDFLHNYIFLTVGRVG---ATSGSIVQR 437

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
                      L   L  +      ++F   K+    +   L  Q F   +IHG+  Q+ 
Sbjct: 438 VVYAEEDHKPRLLVKLLLEQGEGLTVVFVEMKRRADQIEDFLIDQNFPAVSIHGDRSQQE 497

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L  F+ G   ++VA+D+AARGLDIP++ HV N D+P   ++Y+HRIGRTGRAG  G
Sbjct: 498 REHALRLFRSGQRPILVATDVAARGLDIPNITHVINLDMPCNIDDYVHRIGRTGRAGNTG 557

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            A + V + +   +  +   +E+           +
Sbjct: 558 LATSFVNESNKPILRDLLAALEESGQDAPEWFQDM 592


>gi|156540306|ref|XP_001599143.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 476

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 105/393 (26%), Positives = 177/393 (45%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  L L P+++  V D G+  P+ IQ   +P +L     ++   +Q+GTGKTA+FVL M
Sbjct: 90  SFEALHLKPELLKGVYDMGFNSPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 149

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++        P+ L L PT ELA Q  +   +  K                A+  K+
Sbjct: 150 LSRVDTS---KMYPQILCLSPTYELAIQTGEVAARMSKFCPDIKLKFAVRGEEMARGSKI 206

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E    +             +   L     +++ +    +   G       I  ++P T Q
Sbjct: 207 EEHIVIGTPGKVLDWALKFKFFDLKKISVLVLDEADVMIATQGHQDQCIRIHKMLPQTCQ 266

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSAT   E+   +E  + NP  I +     + + I+  +V       K        +
Sbjct: 267 MMFFSATYDKEVMDFAEIIVSNPIIIRLLKEEESLDNIKQYYVKCKDPAEK--YQAITNI 324

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   IIFC+ KK    L   + K G SV  + G++    R+ +L  F+EG  +++
Sbjct: 325 YGVITIGQAIIFCHTKKTASWLAEKMTKDGHSVAILSGDLTVSERISVLDRFREGLEKVL 384

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           + +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  L+ +  
Sbjct: 385 ITTNVLARGIDVEQVTIVVNFDLPMDQNREADCETYLHRIGRTGRFGQSGIAINLIDSPH 444

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
            ++    IE+  +KK+ +L+ + +     +EKI
Sbjct: 445 AMQLCQDIERHFKKKIHFLDAEDAD---EIEKI 474


>gi|326534262|dbj|BAJ89481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 115/402 (28%), Positives = 211/402 (52%), Gaps = 2/402 (0%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LG+SP++V  +   G  +  PIQ   +   +Q  D+ G A+TGTGKT +F +P++  + +
Sbjct: 92  LGISPRIVERLAARGITRLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDRILR 151

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
              +    R  +               +++ ++  L    + GG+P   Q + L  G DV
Sbjct: 152 HNEKNGSGRNPLAIILAPTRELARQVEKEFRESAPLDTLCVYGGVPISQQMRTLNYGVDV 211

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           ++ TPGR++D   RG L ++ I+ +V+DEAD+ML +GF   ++ I   +P  RQ++LFSA
Sbjct: 212 VVGTPGRVIDLLRRGVLNLSEIQFMVLDEADQMLAVGFDEAVEVIMEKLPQNRQSMLFSA 271

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           TM   ++K++  +L++P  I++   S           +  ++   K ++L  L++     
Sbjct: 272 TMPSWIRKLTNQYLKDPVIIDLVGDSEQKLPEGISLYSIVSENYGKSSILGPLIKEHADG 331

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F   K+    L ++   + ++  A+HG+I Q  R + LS F++G   ++VA+D+A
Sbjct: 332 GKCIVFTQTKREADRLAYA-MGRSYACQALHGDISQNQRERTLSGFRDGRFNILVATDVA 390

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARGLDIP+V  V ++++PN +E ++HR GRT RAG+ G A  +   E  + +  IE+ I 
Sbjct: 391 ARGLDIPNVDLVVHYEIPNSSELFVHRSGRTARAGKKGIAILMYTYEQSRTVKGIEQDIG 450

Query: 366 KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
            +   L   +++ +   E  ++ +   +R         + F 
Sbjct: 451 CRFTELP-KVAATDEAAELFNVMRDTRSRSVGTRRSGGSSFS 491


>gi|242005744|ref|XP_002423722.1| predicted protein [Pediculus humanus corporis]
 gi|212506907|gb|EEB10984.1| predicted protein [Pediculus humanus corporis]
          Length = 1130

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 106/364 (29%), Positives = 181/364 (49%), Gaps = 14/364 (3%)

Query: 2    DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            +F +L     +SP +V  + ++GY  PTPIQ + IP +L+   V   A TG+GKTA+F++
Sbjct: 749  NFNELITRFHVSPNIVKNLENSGYNNPTPIQAQAIPAMLEGRQVLACAPTGSGKTAAFLV 808

Query: 58   PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            P+   L+    +    R +I+ PTRELA Q      +  +   L + ++      +    
Sbjct: 809  PIFYHLKGPTKKGY--RCVIVCPTRELARQTYRECLRLSEGTRLKINIIKKVTLDKENYS 866

Query: 118  KLERGADVLICTPGRILDH--FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----IT 171
               +  D+LI TP R++        K+ + ++E L++DE+D++ + G   +         
Sbjct: 867  NTSKKFDILITTPNRLVYLLKQEPPKVNLKSVEWLIVDESDKLFEAGIRGFRDQLAVIYN 926

Query: 172  SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            +      +  +FSAT T  L K     L+N   I V   +S  ET++   +    +  K 
Sbjct: 927  ACDSSVIKRAMFSATQTPHLTKWCRRNLKNLVLINVGVRNSAVETVKQELLFVGCEAGKL 986

Query: 232  CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             A   + L ++      ++F   K+    L + L   G +V  IH +  Q+ R  ++ +F
Sbjct: 987  VAF--RNLINRGLTPPVLVFVQSKERAQELFNELVYDGINVDVIHSDRTQKQRDNVIRSF 1044

Query: 292  KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
            +EG I +++ ++L  RG+D   V  V N+D P  + +YIHRIGRTGRAGR G+A T   +
Sbjct: 1045 REGKIWVLICTELMGRGIDFKGVNLVVNYDFPPSSVSYIHRIGRTGRAGRPGRAITYFTQ 1104

Query: 352  EDIK 355
            +D  
Sbjct: 1105 DDTH 1108


>gi|149277253|ref|ZP_01883395.1| DEAD box-related helicase (ATP-dependent RNA helicase) [Pedobacter
           sp. BAL39]
 gi|149232130|gb|EDM37507.1| DEAD box-related helicase (ATP-dependent RNA helicase) [Pedobacter
           sp. BAL39]
          Length = 412

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 143/414 (34%), Positives = 225/414 (54%), Gaps = 10/414 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF +   +P++   +L  G+   TPIQ + IPL+L + D+   AQTGTGKT +++LP++
Sbjct: 1   MDFQEFNFNPELFEGLLAMGFRNATPIQQEAIPLILSKKDLIACAQTGTGKTGAYLLPIM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
            ++     R     TLIL PTRELA Q+    E      N++   + GG     +E Q +
Sbjct: 61  NMITGTEIRHN--NTLILAPTRELAQQIDLQVEALSYFTNISSLTVYGGGDGIAYEQQKR 118

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +  G D++I TPGR++ H + G L ++ ++ LV+DEADRMLDMGF   I  I S +P  
Sbjct: 119 SMRDGVDIIIATPGRLISHLSSGALKLDQLQHLVLDEADRMLDMGFYDDIMRIVSFLPKE 178

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSATM  +++K++   L NP++I +      A   +  ++   +Q  K       
Sbjct: 179 RQTVLFSATMPPKIRKLASTLLSNPEQISIAISKPAAGINQQAYIVHDSQKVKLLTE--- 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L       + +IF + K+ V NL       GF   A H ++ Q+ R  IL  FK   + 
Sbjct: 236 -LMKNVDFPSILIFASTKEKVKNLGKVFRGLGFKAEAFHSDLGQKEREAILLEFKNKRVP 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ +D+ +RG+D+  +  V N+DVP+  E+YIHRIGRT RA   G A TLV  +D +  
Sbjct: 295 VLIGTDVLSRGIDVEGISLVINYDVPHDPEDYIHRIGRTARAATTGTAITLVNDKDKRKF 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
             IEKLIE+++D +      L    ++  I +   A +    PQ+   + ++ K
Sbjct: 355 ANIEKLIERQIDRMPLP-EHLGQAPDQSSIKEETSADRKPRKPQQRKFWKKKSK 407


>gi|114603670|ref|XP_001144645.1| PREDICTED: DEAD-box protein abstrakt isoform 1 [Pan troglodytes]
          Length = 606

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 127/381 (33%), Positives = 191/381 (50%), Gaps = 16/381 (4%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
             ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++    +   R
Sbjct: 174 DAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKR 233

Query: 70  VRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGIPFEAQNKK 118
           +       P  LI+ P+RELA Q     E Y +            AL IGG+  + Q + 
Sbjct: 234 LPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMET 293

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I S     R
Sbjct: 294 IRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQR 353

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM  ++Q     F ++     V      A       +       ++  ++  L
Sbjct: 354 QTLLFSATMPKKIQN----FAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLL 409

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q T    +IF  +K +V  +   L  +G    AIHG  DQ  R K +  F+EG   +
Sbjct: 410 ECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 469

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHI 357
           +VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + K  D   +
Sbjct: 470 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVL 529

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             ++ L+ +    +   L  L
Sbjct: 530 MDLKALLLEAKQKVPPVLQVL 550


>gi|58177858|gb|AAH89107.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Rattus norvegicus]
          Length = 598

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 114/440 (25%), Positives = 209/440 (47%), Gaps = 27/440 (6%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     +SP+++  +LDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 163 TFQQLDQEYKISPRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 222

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L++   +    R L++ PTRELA+Q+     K  +        +    I  +   
Sbjct: 223 PILMQLKQPTNKGF--RALVISPTRELASQIHRELIKISEGTGFRIHMIHKAAIAAKKFG 280

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++    +    ++  ++E LV+DE+D++ + G   +        
Sbjct: 281 PKSSKKFDILVTTPNRLIYLLKQEPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIF 340

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT   ++++  +  L N   + +   +S  ET+E   +   ++  K
Sbjct: 341 LACTSPKVRRAMFSATFAYDVEQWCKLNLDNIVSVSIGARNSAVETVEQELLFVGSETGK 400

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +  +     ++F    +    L H L  +G +V  IH    Q+ R   + +
Sbjct: 401 LLAMRELVKKGFNPP--VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHS 458

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   
Sbjct: 459 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFT 518

Query: 351 KEDIKHIDAIEKLIEKK----VDWLNG--------DLSSLNPPLEKIDIAQHNHARKNNP 398
           ++D   + ++  +I++      +++ G            +  PLE+  I+          
Sbjct: 519 EDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPKYFLEQA 578

Query: 399 IPQKSTGFDRRKKNYSSQKS 418
             +K  G + +KK     KS
Sbjct: 579 KQKKVAGQNSKKKETLKGKS 598


>gi|16758984|ref|NP_445977.1| probable ATP-dependent RNA helicase DDX52 [Rattus norvegicus]
 gi|34582286|sp|Q99PT0|DDX52_RAT RecName: Full=Probable ATP-dependent RNA helicase DDX52; AltName:
           Full=ATP-dependent RNA helicase ROK1-like; Short=rROK1L;
           AltName: Full=DEAD box protein 52
 gi|12862376|dbj|BAB32441.1| ROK1-like protein [Rattus norvegicus]
 gi|149053684|gb|EDM05501.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Rattus norvegicus]
          Length = 598

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 114/440 (25%), Positives = 209/440 (47%), Gaps = 27/440 (6%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     +SP+++  +LDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 163 TFQQLDQEYKISPRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 222

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L++   +    R L++ PTRELA+Q+     K  +        +    I  +   
Sbjct: 223 PILMQLKQPTNKGF--RALVISPTRELASQIHRELIKISEGTGFRIHMIHKAAIAAKKFG 280

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++    +    ++  ++E LV+DE+D++ + G   +        
Sbjct: 281 PKSSKKFDILVTTPNRLIYLLKQEPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIF 340

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT   ++++  +  L N   + +   +S  ET+E   +   ++  K
Sbjct: 341 LACTSPKVRRAMFSATFAYDVEQWCKLNLDNIVSVSIGARNSAVETVEQELLFVGSETGK 400

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +  +     ++F    +    L H L  +G +V  IH    Q+ R   + +
Sbjct: 401 LLAMRELVKKGFNPP--VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHS 458

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   
Sbjct: 459 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFT 518

Query: 351 KEDIKHIDAIEKLIEKK----VDWLNG--------DLSSLNPPLEKIDIAQHNHARKNNP 398
           ++D   + ++  +I++      +++ G            +  PLE+  I+          
Sbjct: 519 EDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPKYFLEQA 578

Query: 399 IPQKSTGFDRRKKNYSSQKS 418
             +K  G + +KK     KS
Sbjct: 579 KQKKVAGQNSKKKETLKGKS 598


>gi|225442993|ref|XP_002268833.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743441|emb|CBI36308.3| unnamed protein product [Vitis vinifera]
          Length = 428

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 92/376 (24%), Positives = 161/376 (42%), Gaps = 3/376 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ +++D+G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 49  FRDFLLKPELLRSIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 108

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V                   + F  Y  +  + V      I       K E  
Sbjct: 109 IEPVAGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVSIKTHKDLLKNECP 168

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L +    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 169 HIVVGTPGRILALARDKDLGLKHVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 228

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  I V+  +              ++  K        L   
Sbjct: 229 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNR--KLNDLLDA 286

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L +  F    IH  + Q  R+    NFKEG  +++VA+
Sbjct: 287 LDFNQVVIFVKSVSRAAELNKLLMECNFPSICIHSGMPQEERLTRYKNFKEGHKRILVAT 346

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKHIDAIE 361
           DL  RG+DI  V  V N+D+P+ A+ Y+HR+GR GR G  G A T V+   D   ++ ++
Sbjct: 347 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQ 406

Query: 362 KLIEKKVDWLNGDLSS 377
           +  E  +  L   + +
Sbjct: 407 ERFEVDIKELPEQIDT 422


>gi|312373380|gb|EFR21136.1| hypothetical protein AND_17530 [Anopheles darlingi]
          Length = 417

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 105/393 (26%), Positives = 175/393 (44%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  L L P+++  V   G+  P+ IQ   +P +L     ++   +Q+GTGKTA+FVL M
Sbjct: 31  SFEALHLKPELLQGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 90

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           ++ ++    R   P+ + L PT ELA Q  +   K  K                A+ ++L
Sbjct: 91  ISRVDP---RKNYPQVICLSPTYELAIQTGEVAAKMSKFCRDVRLRFAVRGEDVAKGERL 147

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             R   L      ++ +    +   G       I   +P T Q
Sbjct: 148 TDHIIIGTPGKLMDWGIKFRAFDLRKISVFVLDEADVMIATQGHQDQCIRIHKQLPSTCQ 207

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSAT   E+ + +E  + NP  I +     + + I+  +V    Q  K        +
Sbjct: 208 MMFFSATYEKEVMEFAEYIVPNPIIIRLAREQESLDNIKQYYVKCRDQNEK--YQAISNI 265

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   IIFC+ +K    L   + K G SV  + G +    R+ +L  F+ G  +++
Sbjct: 266 YGVITVGQAIIFCHTRKTAGWLAERMSKDGHSVAVLSGELTVDQRLAVLDRFRAGLEKVL 325

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           + +++ +RG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  LV  + 
Sbjct: 326 ITTNVLSRGIDVAQVTIVVNFDLPMDQNGRADCETYLHRIGRTGRFGKSGIAINLVEGEH 385

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
           ++K    IE+  +KK+  L+ + S     +EKI
Sbjct: 386 NMKICKTIEQHFQKKIHLLDAENSD---EIEKI 415


>gi|303288181|ref|XP_003063379.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455211|gb|EEH52515.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 513

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 129/385 (33%), Positives = 203/385 (52%), Gaps = 14/385 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+     V   +    +  PTP+Q   IP+ L R D+   AQTG+GKTA+F  P++ 
Sbjct: 54  SFQDVDFGAAVNKNIARCKFKNPTPVQKYAIPISLARRDLMACAQTGSGKTAAFCFPIIY 113

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                     +   R   P  L++ PTRELA Q+ +   K+     +   ++ GG P   
Sbjct: 114 GLLDRGLAGSQRGGRKTFPLALVIAPTRELAIQIHEESRKFAYQTGVASCVIYGGAPAAQ 173

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q +++ERG D+L+ TPGR++D  +R K+ ++ +  L +DEADRMLDMGF P I+ I    
Sbjct: 174 QFREMERGCDILVATPGRLIDLVDRAKISLSEVRYLALDEADRMLDMGFEPQIRQIVEQR 233

Query: 175 PFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                   QT+LFSAT   E+Q+++ +FL++   + V    S+   I        +   K
Sbjct: 234 DMPPTGERQTMLFSATFPREIQRMASDFLKDYIFLTVGRVGSSHTLITQQIEYLRSYEDK 293

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K  L+  +   +      ++F   K+    L   L ++GF   +IHG+  Q+ R   L +
Sbjct: 294 KSMLMDLVHAVKG---LTLVFVETKRGADQLEDWLSREGFPSTSIHGDRTQQEREYALKS 350

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+D+AARGLDIP V HV NFD+P+  ++Y+HRIGRTGRAG+ G A     
Sbjct: 351 FRSGRTPILVATDVAARGLDIPHVTHVINFDLPSDIDDYVHRIGRTGRAGKKGLATAFFT 410

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDL 375
            +D     ++ +L+ +    +   L
Sbjct: 411 DKDAGLARSMIELMTEAGQEVPSFL 435


>gi|50750746|ref|XP_422125.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 18
           [Gallus gallus]
          Length = 662

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 119/392 (30%), Positives = 202/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADL-GL-SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            F  L GL S   +  + D G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 170 SFTSLAGLVSENTLKGISDMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAFLIPA 229

Query: 60  LTILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K +   R     +IL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 230 VELIYKLKFMPRNGTGVIILSPTRELAMQTYGVLKELMNHHVHTYGLIMGGSNRSAEAQK 289

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+L++GF   ++ I  L+P  
Sbjct: 290 LGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEEEMKQIIKLLPKR 349

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ +++  L+          +    T++          S+K  LL  
Sbjct: 350 RQTMLFSATQTRKVEDLAKISLKKEPLYVGVDDNKETATVDGLEQGYVVCPSEKRFLLLF 409

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 410 TFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQTKRTTTFFQFCNAESG 469

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
           +++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 470 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGINGR-GHALLILRPEELG 528

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  ++   + ++    +S +   LEK+
Sbjct: 529 FLRYLKQARVPLSEFEFSWSKISDIQSQLEKL 560


>gi|327260241|ref|XP_003214943.1| PREDICTED: ATP-dependent RNA helicase DDX18-like [Anolis
           carolinensis]
          Length = 666

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 116/393 (29%), Positives = 198/393 (50%), Gaps = 11/393 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP- 58
            F  L   +S   +  + + G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 173 SFTSLKSLISENTLKGITEMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAFLIPA 232

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  I +           LIL PTRELA Q     ++   ++  T  L++GG    A+ ++
Sbjct: 233 IELIYKLKFMPRNGTGVLILSPTRELAMQTYGVLKELMTHHVHTYGLVMGGSNRSAEAQR 292

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+L++GF   ++ I  L+P  
Sbjct: 293 LGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEEEMKQIIKLLPKR 352

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ +++  L+          +    T+E          S+K  LL  
Sbjct: 353 RQTMLFSATQTRKVEDLAKISLKKEPLYVGVDDNKETATVEGLEQGYVVCPSEKRFLLLF 412

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 413 TFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQTKRTTTFFQFCNADSG 472

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
           +++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 473 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGINGR-GHALLILRPEELG 531

Query: 356 HIDAIEKL---IEKKVDWLNGDLSSLNPPLEKI 385
            +  +++    + +  ++    +S +   LEK+
Sbjct: 532 FLRYLKQARVPLNE-FEFSWSKISDIQSQLEKL 563


>gi|321469269|gb|EFX80250.1| putative germ-line specific RNA helicase vasa protein [Daphnia
           pulex]
          Length = 761

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 123/388 (31%), Positives = 205/388 (52%), Gaps = 14/388 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + GL P ++  + ++GYVKPTP+Q  +I ++L + D+   A TG+GKTA++++P++ 
Sbjct: 328 SFEEAGLRPLLLQNIKNSGYVKPTPVQKGSIAVILAKRDLIASAVTGSGKTAAYLVPVMN 387

Query: 62  ILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           IL +          V+ P  +IL PTRELA Q+     K+  N  L   L+ GG     Q
Sbjct: 388 ILLEQGISGGSHGMVQKPEVVILAPTRELAIQIHREAYKFAYNSVLKSVLIYGGTVSSNQ 447

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NIT 171
              L+ G ++L+ T GR+ D  +RG    + ++ L++DEADRMLDMGF P I+    + T
Sbjct: 448 RSNLQAGCNILVATTGRLKDFLDRGVFDFSAVKFLILDEADRMLDMGFGPDIEKIAAHPT 507

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 R+T +FSAT  +E+Q ++ N++++   +   T   T   ++  F        + 
Sbjct: 508 MPPKGIRRTCMFSATFPEEVQALAANYMEDYIFVTTGTVGGTNPDVQQEFFQCARNEKRT 567

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             +       +  +   I+F + KK    +   L        +IHG+  Q  R + L + 
Sbjct: 568 KLMETLRGLGESKI---IVFVDSKKTADFVAVYLCNNDIQATSIHGDRLQSQREEALRDL 624

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   ++VA+++AARGLDI  V +V N+D+P+  E Y+HRIGRTGR G  G + +   +
Sbjct: 625 KSGKRNVLVATNVAARGLDIEGVNYVINYDLPSDIEEYVHRIGRTGRVGNVGHSISFFDE 684

Query: 352 E-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           E D  ++  +  L+ K    +   + +L
Sbjct: 685 EKDGPNVGKLVSLLTKSNADVPAFMQAL 712


>gi|302753758|ref|XP_002960303.1| hypothetical protein SELMODRAFT_75384 [Selaginella moellendorffii]
 gi|302767980|ref|XP_002967410.1| hypothetical protein SELMODRAFT_168957 [Selaginella moellendorffii]
 gi|300165401|gb|EFJ32009.1| hypothetical protein SELMODRAFT_168957 [Selaginella moellendorffii]
 gi|300171242|gb|EFJ37842.1| hypothetical protein SELMODRAFT_75384 [Selaginella moellendorffii]
          Length = 575

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 126/372 (33%), Positives = 196/372 (52%), Gaps = 9/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +    Y  PTPIQ + +P+ L   D+ G A+TG+GKTA+F +PM+ 
Sbjct: 130 TFEDMCLHANIMKDIAFHEYTNPTPIQAQAMPVALSGRDLLGCAETGSGKTAAFAIPMIQ 189

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
               +        P  L+L PTRELA Q+      + ++ +    A+++GG     Q  +
Sbjct: 190 HCLAQPPIRHGDGPLALVLAPTRELAQQIEKEVRAFSRSTDGFKTAIVVGGTHIGEQRSE 249

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G  V++ TPGR +DH  +G   +  +  +V+DEADRMLDMGF+P I+ +   +P   
Sbjct: 250 LRSGVQVVVATPGRFIDHLQQGNSSLLRVSYVVLDEADRMLDMGFLPQIKEVMQNLPKKH 309

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET------IEHCFVATYAQYSKKC 232
           QTLLFSATM +E++ +++ +L  P +++V   SS                      +   
Sbjct: 310 QTLLFSATMPEEIEALAQEYLTKPVQVKVGKVSSPTSNVLQSLEKVDEKDKIDYLLAMLV 369

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
               Q  ++       I+F  +K    ++  +L  QG    A+HG   Q  R   L +F+
Sbjct: 370 ESSNQSERAGQPPPLTIVFVERKARCDDVADALLAQGLKAAALHGGRTQGEREAALRDFR 429

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +G I ++VA+D+A+RGLD+  V HV N D+P   E+Y+HRIGRTGRAG  G+A +L    
Sbjct: 430 KGAISILVATDVASRGLDVTGVAHVVNLDLPKVMEDYVHRIGRTGRAGASGRATSLYTDR 489

Query: 353 DIKHIDAIEKLI 364
           D   +  I K I
Sbjct: 490 DAFLVAQIRKAI 501


>gi|270610556|gb|ACZ92304.1| vasa-like protein [Scylla paramamosain]
          Length = 632

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 119/388 (30%), Positives = 202/388 (52%), Gaps = 13/388 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L   ++  V  A + +PTPIQ  +IP+++ + D+   AQTG+GKTA+F+LPML 
Sbjct: 195 TFQEMNLRNVLLENVSKAEFPRPTPIQKYSIPILMNQRDLMACAQTGSGKTAAFLLPMLH 254

Query: 62  IL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +            V  P  L+L PTRELA Q+     K+     +  + + GG+    Q
Sbjct: 255 YILENDIESHSFEDVAQPVGLVLAPTRELAIQIFQEARKFSLQTVIKNSCIYGGVATNFQ 314

Query: 116 NKKLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NI 170
            ++++     ++I TPG++L     GK+ + +++ LV DEADRMLD+GFI  ++    + 
Sbjct: 315 LRRMKEQGCHIIIATPGKLLFFLGMGKISLKSLKFLVFDEADRMLDLGFIDDMEKLVAHP 374

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  R T++FSAT  +E+Q+ +  FL N   +      +  + +    +   A++ K
Sbjct: 375 DMPPKGERLTMMFSATFPEEVQRCALRFLDNYLFLVAGQVGAANKDV-CQTIVQVAKFEK 433

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L + L   +D+ +  ++F   K+    +   L   G     +HG   Q  R + LS 
Sbjct: 434 RDKLAEYLRSFEDSQEKVLVFVEMKRQADFVGTYLSTNGSRSVTLHGGRYQEQREEALSA 493

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+    +++VA+ +AARGLDI  VG+V N+D+P  A+ Y+HRIGRTGR G  G+A +   
Sbjct: 494 FRSNQYRVLVATSVAARGLDIRGVGYVINYDLPKSADEYVHRIGRTGRVGNRGQAVSFYD 553

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSS 377
            E D+     + +++      +   L S
Sbjct: 554 PEQDLNLAKDLVRILTDAEQEVPSWLRS 581


>gi|170590083|ref|XP_001899802.1| DEAD/DEAH box helicase family protein [Brugia malayi]
 gi|158592721|gb|EDP31318.1| DEAD/DEAH box helicase family protein [Brugia malayi]
          Length = 782

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 119/440 (27%), Positives = 221/440 (50%), Gaps = 15/440 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +  +GL   +   +   G+ +PTPIQ K IP+++   D+  +++TG+GKTA+FV+P+L  
Sbjct: 33  WQTIGLDHTLFKGIQKKGFRQPTPIQRKAIPIIIDGKDIVAMSRTGSGKTAAFVIPILQK 92

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +    R LI+EPTRELA Q     ++ G+   L  A+L+GG   E Q + +   
Sbjct: 93  LKVRDMKG--IRALIIEPTRELAMQTFTVVKELGRFTGLRCAVLVGGDRIEEQFQTVHEK 150

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR+L         ++ ++++V DEADR+ +MGF   +  +   +P  RQTLL
Sbjct: 151 PDIVIATPGRLLHVIVEMDFRLSAVQVIVFDEADRLFEMGFAEQLHEVLKRLPENRQTLL 210

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +   S+  L +P  + ++     ++ +            K  A L    +  
Sbjct: 211 FSATLPKSIIAFSKAGLSDPVLVRLDLAEKISDKLSM-MFLYCRTDDKLAAFLHLAREVV 269

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  I+FC   K+V  L     K G     ++  +D  +R   +  F++    L++ +
Sbjct: 270 AANEQTIVFCATMKHVEYLAAVAGKAGIDCVVLYSQLDSVARNINIQKFRKKECSLLIVT 329

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP +    N+  P++ + ++HR+GR  RAGR GKA +L   +++ ++  +  
Sbjct: 330 DIAARGVDIPLLDVAINYHFPSKPKLFVHRVGRVARAGRSGKAISLFGADEVPYVIDLFL 389

Query: 363 LIEKKVDWLNGDLSSLNPPL----------EKIDIAQ--HNHARKNNPIPQKSTGFDRRK 410
            + + + +      S +  L           +ID  +  H+++ + + + +KS    ++ 
Sbjct: 390 FLNRPLKFATTSSVSSDEALIGIFPDGIIDREIDFLKNVHDNSDELDDLLKKSENAMQKY 449

Query: 411 KNYSSQKSHIPLKESEKISK 430
           K    Q S   ++ ++   K
Sbjct: 450 KKTRPQPSAESVRRAKDEVK 469


>gi|327400905|ref|YP_004341744.1| DEAD/DEAH box helicase domain-containing protein [Archaeoglobus
           veneficus SNP6]
 gi|327316413|gb|AEA47029.1| DEAD/DEAH box helicase domain protein [Archaeoglobus veneficus
           SNP6]
          Length = 389

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 218/379 (57%), Gaps = 9/379 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+++ LS  ++  +   G  +PT IQ K IPLV +  DV   ++TG+GKT +F +P++
Sbjct: 3   LKFSEMNLSEGMLGLLEMHGIEEPTEIQTKAIPLVEKGFDVVAQSETGSGKTLAFAIPII 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E G+      + L+L PTRELA Q+ + F ++ ++  L +A + GG+P      +  
Sbjct: 63  EAAETGKG----IQALVLTPTRELANQIENEFRRFSRHKGLRIANIHGGVPI-EPQIRDL 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R ADV++ TPGR+LDH  R  +  + +E  VIDEADRMLDMGFI  ++ I    P TRQ+
Sbjct: 118 RRADVVVGTPGRLLDHVRRKTVDFSRVEYFVIDEADRMLDMGFIDDVKAIMRCTPKTRQS 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  E++ ++  +++NPK I            ++     Y     +   +   L 
Sbjct: 178 LLFSATIPPEVRALASRYMKNPKTIRTKELVDPKLLNQY----YYDVDDSEKFSMLVHLL 233

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  K  ++F N +K    +  +L   GF    +HG + Q  R +++  F++G I+++V
Sbjct: 234 RKENPKKALVFTNMRKTSDIVAKNLFMHGFKASVLHGGLTQSKRDRMMERFRKGEIRVLV 293

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLD+  V HVFN+DVP++AE+YIHRIGRT RAG++GKA T++ ++D      I
Sbjct: 294 ATDVASRGLDVKGVTHVFNYDVPSKAEDYIHRIGRTARAGKNGKAVTILGRKDHGSFRRI 353

Query: 361 EKLIEKKVDWLNGDLSSLN 379
                  ++ L      + 
Sbjct: 354 MVKYGLTIERLEETFQEVP 372


>gi|313231894|emb|CBY09006.1| unnamed protein product [Oikopleura dioica]
          Length = 1234

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 142/490 (28%), Positives = 232/490 (47%), Gaps = 45/490 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FAD G   K++ A+ + G+  PTPIQ  +IP+ +   D+C  A TG+GKT +FVLP+L 
Sbjct: 104 SFADYGFERKLLKALANVGWTTPTPIQKASIPVAVTGRDICACATTGSGKTGAFVLPILQ 163

Query: 62  ILEKGRARVRMPRTLILE---PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                        T +L             A   +   +  N+TVA   GG+    Q + 
Sbjct: 164 RFALRDPSKVESCTRVLVLLPTRELCVQVFAVFRKLVAELENVTVACAAGGLDLVQQTQV 223

Query: 119 LERGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L R  D+L+ TPGR++DH  N     +  IEILV+DEADRMLD  F   ++ I S    T
Sbjct: 224 LRRDPDILVATPGRLIDHLHNTPNFSLQEIEILVLDEADRMLDEFFASQMKEILSQTCKT 283

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSATMTD +Q++++  L  P +I +++ +  A+ +E  FV            +  
Sbjct: 284 RQTMLFSATMTDTVQELTDVALTKPMKIFISSNTDVADGLEQQFVRIRPGREGDREAMVA 343

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L     M   +I    +K    +   L   G  V  +HG++ Q +R++ L+NFK GT  
Sbjct: 344 ALNKSLRM--LLILYQTRKMAHRMHILLGLLGLKVVELHGSMSQTARLEALANFKNGTAH 401

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MV +D+AARGLDIP V  V N  +PN  ++Y+HR+GRT RAG+ G++ +LV + + K +
Sbjct: 402 IMVCTDVAARGLDIPSVRTVINMTLPNNYKSYVHRVGRTARAGKQGRSISLVGESEWKIL 461

Query: 358 DAIEKLIE---------------------------KKVDWLNGDLSSLNPPLEKIDIAQH 390
             I K  +                           KK+  +  + ++L     +++ A++
Sbjct: 462 KMIIKASKTSCKTRTLATEVVTNFKTKLNEYESKVKKIIDMENEEAALAAIENQVNAAKN 521

Query: 391 NHARKNNPIPQKSTGFDRRKK------------NYSSQKSHIPLKESEKISKLQQDIQEN 438
              R N       T ++R  +            N    ++ + +++++     +Q  ++ 
Sbjct: 522 KVIRPNEKRGWFQTKYERELEKADRMLKNKIDTNTPEGRAQLEMQKADAFRHREQKREKK 581

Query: 439 DADSLGFRGN 448
                     
Sbjct: 582 GNRVRALGSE 591



 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 145/475 (30%), Positives = 229/475 (48%), Gaps = 34/475 (7%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
             FAD G   K++ A+ + G+  PTPIQ  +IP+ +   D+C  A TG+GKT +FVLP+L 
Sbjct: 653  SFADYGFERKLLKALANVGWTTPTPIQKASIPVAVTGRDICACATTGSGKTGAFVLPILQ 712

Query: 62   ILEKGRARVRMPRTLILE---PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                         T +L             A   +   +  N+TVA   GG+    Q + 
Sbjct: 713  RFALRDPSKVESCTRVLVLLPTRELCVQVFAVFRKLVAELENVTVACAAGGLDLVQQTQV 772

Query: 119  LERGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L R  D+L+ TPGR++DH  N     +  IEILV+DEADRMLD  F   ++ I S    T
Sbjct: 773  LRRDPDILVATPGRLIDHLHNTPNFSLQEIEILVLDEADRMLDEFFASQMKEILSQTCKT 832

Query: 178  RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            RQT+LFSATMTD +Q++++  L  P +I +++ +  A+ +E  FV            +  
Sbjct: 833  RQTMLFSATMTDTVQELTDVALTKPMKIFISSNTDVADGLEQQFVRIRPGREGDREAMVA 892

Query: 238  LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             L     M   +I    +K    +   L   G  V  +HG++ Q +R++ L+NFK GT  
Sbjct: 893  ALNKSLRM--LLILYQTRKMAHRMHILLGLLGLKVVELHGSMSQTARLEALANFKNGTAH 950

Query: 298  LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +MV +D+AARGLDIP V  V N  +PN  ++Y+HR+GRT RAG+ G++ +LV + + K +
Sbjct: 951  IMVCTDVAARGLDIPSVRTVINMTLPNNYKSYVHRVGRTARAGKQGRSISLVGESEWKIL 1010

Query: 358  DAIEKLIE---------------------------KKVDWLNGDLSSLNPPLEKIDIAQH 390
              I K  +                           KK+  +  + ++L     +++ A++
Sbjct: 1011 KMIIKASKTSCKTRTLATEVVTNFKTKLNEYESKVKKIIDMENEEAALAAIENQVNAAKN 1070

Query: 391  NHARKNNPIPQKSTGFDRR-KKNYSSQKSHIPLKESEKISKLQQDIQENDADSLG 444
               R N       T ++R  +K      +H  ++      K +  I  N  +   
Sbjct: 1071 KVIRPNEKRGWFQTKYERELEKADRMLDAHSGIRNRNTRGKQKNKIDTNTPEGRA 1125


>gi|156395780|ref|XP_001637288.1| predicted protein [Nematostella vectensis]
 gi|156224399|gb|EDO45225.1| predicted protein [Nematostella vectensis]
          Length = 412

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 124/380 (32%), Positives = 200/380 (52%), Gaps = 5/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   G+ KP+ IQ + I    Q  DV   AQ+GTGKTA+F + +L 
Sbjct: 34  SFDDMNLKEALLRGIYAYGFEKPSAIQQRAIRPCCQARDVIAQAQSGTGKTATFAISILQ 93

Query: 62  ILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            ++               +L PTRELA Q+       G   ++     IGG        K
Sbjct: 94  EIDTNYKDKNGCDCCQALVLAPTRELAQQIQKVVLALGDYMHVKCHACIGGTNVREDRMK 153

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G  V++ TPGR+ D  NRG L   +I++ V+DEAD ML  GF   I ++ + +P + 
Sbjct: 154 LEEGVHVVVGTPGRVFDMINRGVLNTRDIKLFVLDEADEMLSRGFKDQIYDVFTRLPTSV 213

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +L SATM  ++ +V+  F+++  RI V     T E I+  FV    +  K   L    
Sbjct: 214 QVVLLSATMPTDVLEVTNKFMRDVVRILVKREEVTLEGIKQFFVLVEKEDWKLDTLCDL- 272

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                T+   +IF N ++ V  L   + ++  +V ++HG++ Q+ R  I+  F+ G+ ++
Sbjct: 273 -YETLTITQAVIFANTRRKVDWLAAKMTEKDHTVSSMHGDMSQKERDIIMKEFRSGSSRV 331

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V  +D++ + 
Sbjct: 332 LITTDLLARGIDVHQVSLVINYDLPSNRENYIHRIGRGGRFGRKGAAINFVTNDDVRMLK 391

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            IE+    K++ +  +++ L
Sbjct: 392 DIEQYYNTKIEEMPMNVADL 411


>gi|294501273|ref|YP_003564973.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           megaterium QM B1551]
 gi|295706620|ref|YP_003599695.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294351210|gb|ADE71539.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           megaterium QM B1551]
 gi|294804279|gb|ADF41345.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           megaterium DSM 319]
          Length = 439

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 125/380 (32%), Positives = 202/380 (53%), Gaps = 13/380 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F      P ++ A+   G+ +PT IQ + IP VL+   V G +QTGTGKT +++LP+L 
Sbjct: 5   NFERFEFQPFLIEAIKQLGFYQPTEIQERLIPSVLKGESVIGQSQTGTGKTHAYLLPLLE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADN----FEKYGKNYNLTVALLIGGIPFEAQNK 117
            ++  +  V++    I  PTRELA+Q+        +   +   ++    IGG   +    
Sbjct: 65  KVDPKKEEVQVV---ITAPTRELASQIYQEVLKLTKHSAEGEEISAKCFIGGTDKQRTID 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL++   V++ TP R+ D  N   L++   + LV+DEAD MLDMGF+  +  + S +P  
Sbjct: 122 KLKKQPQVVVGTPARLFDLVNEKALVVYTTKALVVDEADLMLDMGFLEDVDRLASNMPEK 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+ ++L+   + +++NPK   V+   + A  +EH  V       +    L  
Sbjct: 182 LQMLVFSATIPEKLKPFLKKYMENPKFTHVSPKQAAAAKLEHVLVPLRH---RNKFKLLH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         I+F N KK    +   L  +G  V  IHG++  R R K++        Q
Sbjct: 239 DMLISYNPYLAIVFTNTKKMADEVADDLLSKGLKVGRIHGDLSPRDRKKMMKQINNLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV NF++P+  + YIHR+GRT RAG  G A T+   ED   +
Sbjct: 299 YVVATDLAARGIDIEGISHVINFELPSDLDFYIHRVGRTARAGHSGIAATIFDVEDEDAV 358

Query: 358 DAIEKLIEKKVDWLNGDLSS 377
           + +EK+    ++++N DL  
Sbjct: 359 NKLEKM---GIEFVNKDLQK 375


>gi|225710812|gb|ACO11252.1| ATP-dependent RNA helicase DDX39 [Caligus rogercresseyi]
          Length = 426

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 95/382 (24%), Positives = 168/382 (43%), Gaps = 4/382 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAVLGMDILSQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY     + V      I  + Q  K    
Sbjct: 106 MEPVDGQVSVLVMCHTRELAFQISKEYERFSKYLPGAKVGVFFGGLAISKDEQVLKSNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L N    ++ +    +  +     +Q I    P  +Q ++
Sbjct: 166 HIVVGTPGRILALVRSKKLNLKNVKHFILDECGKMLEQLDMRRDVQEIFRSTPHEKQVMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ +++ V + F+Q+P  + V+  +                  K   L +      
Sbjct: 226 FSATLSKDVRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKLKDTEKNRKLFEL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  V L   L +Q F+  AIH  ++Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVVIFVKSVQRCVALAQLLIEQNFTAIAIHRGMNQEERLSRYQQFKDFQKRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P   + Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDTDTYLHRVARAGRFGTKGLAITFVSDESDAKTLNEVQ 403

Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383
              E  +  L  D + L+  +E
Sbjct: 404 DRFEVDITELP-DETDLSTYIE 424


>gi|213405451|ref|XP_002173497.1| ATP-dependent RNA helicase dbp4 [Schizosaccharomyces japonicus
           yFS275]
 gi|212001544|gb|EEB07204.1| ATP-dependent RNA helicase dbp4 [Schizosaccharomyces japonicus
           yFS275]
          Length = 767

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 122/468 (26%), Positives = 199/468 (42%), Gaps = 25/468 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL LS     A+ +A +VK T IQ K I + L+  D+ G A+TG+GKT +F++P++  
Sbjct: 41  FEDLPLSQPTKSALKNAHFVKCTDIQKKAIYVALKGRDILGAAKTGSGKTLAFLIPVIEN 100

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         LI+ PTRELA Q  +   K G+ ++ +  L+IGG  ++ +  +L R
Sbjct: 101 LYRRKWTPYDGLGALIISPTRELAMQTFETLVKIGRLHSFSAGLIIGGNDYKQERDRLSR 160

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +           +++++LV+DEADR+LDMGF   +  I + +P  RQT+
Sbjct: 161 MNILVCTPGRLLQHMDQAINFDTSSLQMLVLDEADRILDMGFRKTLDAIITSLPKKRQTM 220

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T        +                     + F        K   L   +   
Sbjct: 221 LFSATQTSVSDLARLSLHDPDYISVHEHADHVTPDNLNQFYLVAPLPEKLDILFGFIKTH 280

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                       ++      C    + G  +  +HG   Q SR +I + F      +++ 
Sbjct: 281 LKLKIIVFFSSCKQVRFAFECFKRLRPGVPLMHLHGKQKQASRTEIAAKFTSTKNAVLLC 340

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+ ARGLD P V  V   D P   + YIHR+GRT R  R G A  ++   +   +    
Sbjct: 341 TDIVARGLDFPAVDWVVQVDAPEDVQTYIHRVGRTARFERGGNALLMLLPSEEAFLKR-- 398

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
                        L S   P+E+I+I +       N +  ++  F      Y  QK+ I 
Sbjct: 399 -------------LDSKKVPIERINIKEGKKTSIRNNL--QALCFKDPDLKYLGQKAFIS 443

Query: 422 ------LKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
                 L + +++ K+ +      AD+LG  G  P     +NR     
Sbjct: 444 YVRSVFLLKDKEVFKVDELPTAEFADALGLPGT-PRIKFLENRKSNAS 490


>gi|321479275|gb|EFX90231.1| hypothetical protein DAPPUDRAFT_190268 [Daphnia pulex]
          Length = 623

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 123/394 (31%), Positives = 205/394 (52%), Gaps = 16/394 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +     ++  +   G  +P+PIQI+ +P VL   D+ GIA TG+GKT  FVLP++ 
Sbjct: 183 SFNAMKFPKGILVGLQKKGIKQPSPIQIQGLPTVLSGRDMIGIAFTGSGKTLVFVLPIVV 242

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNY------NLTVALLIGGI 110
              +   ++       P  LI+ P+RELA Q+ +  E +           +   L+IGG 
Sbjct: 243 FSLEQELKMPFLPNEGPFGLIVCPSRELAKQILETVEHFADCLAQQGMPRIKSCLIIGGT 302

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
           P     + + RG  +++ TPGR++D  ++  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 303 PVNQSLEIINRGVHIIVATPGRLMDMLDKKMIKLDVCRYLCMDEADRMIDMGFEEDIRTI 362

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q     F ++     +      A       V      ++
Sbjct: 363 FSYFKGQRQTLLFSATMPKKIQN----FARSALVKPITINVGRAGAASMNVVQEVEYVNQ 418

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IF  +K++V  +   L  +G    AIHG+ DQ  R + +  
Sbjct: 419 EAKIVHLLECIQKTQPPVLIFAEKKQDVDAIHEYLLLKGIEAVAIHGSKDQEERSRAVDA 478

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F++G   ++VA+D+A++GLD  ++ HV N+D+P+  ENY+HRIGRTGR+G  G+A T + 
Sbjct: 479 FRQGIKDVLVATDVASKGLDFVNIQHVINYDMPDDIENYVHRIGRTGRSGNKGQATTFIN 538

Query: 351 K-EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
           K  +   +  ++ L+ +    +   L++L    E
Sbjct: 539 KSNEESVLLDLKHLLIEAKQNVPPFLATLQSETE 572


>gi|296478242|gb|DAA20357.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19B [Bos taurus]
          Length = 484

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL M
Sbjct: 98  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 157

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      R P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 158 LSQVEPAN---RHPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 214

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 215 SEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 274

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        +
Sbjct: 275 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNSRDEK--FQALCNI 332

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 333 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGKEKVL 392

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 393 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 452

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 453 SMNILNRIQEHFNKKIERLDTD 474


>gi|145350640|ref|XP_001419709.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579941|gb|ABO98002.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 723

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 123/463 (26%), Positives = 216/463 (46%), Gaps = 44/463 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A  GL+ +V   +  +G+ KP PIQ + +P+++   D  G+A+TG+GKT +++LPML 
Sbjct: 118 TWAQAGLNNRVHELIRRSGFEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAYILPMLR 177

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  +I+ PTREL  Q+  + ++YGK    +   + GG    AQ   L
Sbjct: 178 HINAQEPLASGDGPIGMIMGPTRELVTQIGKDCKRYGKAMGFSAVSVYGGSGIAAQIGDL 237

Query: 120 ERGADVLICTPGRILDHFNR---GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA+++ CTPGR++D           +  +  +V+DEADRM DMGF P I  I + +  
Sbjct: 238 KRGAEIVACTPGRMIDLLTTGSGKITNLRRVTYMVLDEADRMFDMGFEPQITRILANLRP 297

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT++FSAT    ++ ++   L NP  I++   S          +        +   + 
Sbjct: 298 DRQTVMFSATFPHTMEALARAALDNPIEIQIGGKSVVNSD--IEQLVELRPEEDRFLRVL 355

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL         IIF   +    +   S  K                             
Sbjct: 356 ELLGEWYERGKIIIFVASQDKADSTTISDFK-------------------------SDVC 390

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+ +AARGLD+ D+  V N+D PN  E+Y+HR+GRTGRAG+ G A T +++++ K 
Sbjct: 391 NILVATSVAARGLDVKDLRLVINYDTPNHLEDYVHRVGRTGRAGQKGTAVTFISEDEEKF 450

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              + K +++    +  D+ ++     +         RK   +    +GF      ++ +
Sbjct: 451 APDLVKALKESKQNVPQDVQAMADEFTR--------KRKEGLVGAAGSGFGGSGFKFNQE 502

Query: 417 KS---HIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPK 456
           +        +++ + + L  D  E+D+D      + P  ++ K
Sbjct: 503 EQDLLRKQKRDAARAAGLDVDDGESDSDEE-PAAHTPGALVAK 544


>gi|119351039|gb|ABL63415.1| ATP-dependent RNA helicase [Rattus norvegicus]
          Length = 598

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 93/438 (21%), Positives = 179/438 (40%), Gaps = 23/438 (5%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     +SP+++  +LDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 163 TFQQLDQEYKISPRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 222

Query: 58  PMLTILEKGRAR-----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
           P+L  L++   +     V  P   +         ++++         +          P 
Sbjct: 223 PILMQLKQPTNKGFRALVISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPK 282

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
            ++   +       +    +          +   +        +               +
Sbjct: 283 SSKKFDILVTTPNRLIYLLKQEPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLA 342

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                 +  +FSAT   ++++  +  L N   + +   +S  ET+E   +   ++  K  
Sbjct: 343 CTSPKVRRAMFSATFAYDVEQWCKLNLDNIVSVSIGARNSAVETVEQELLFVGSETGKLL 402

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           A+ + + +  +     ++F    +    L H L  +G +V  IH    Q+ R   + +F+
Sbjct: 403 AMRELVKKGFNPP--VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFR 460

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   ++
Sbjct: 461 AGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTED 520

Query: 353 DIKHIDAIEKLIEKK----VDWLNG--------DLSSLNPPLEKIDIAQHNHARKNNPIP 400
           D   + ++  +I++      +++ G            +  PLE+  I+            
Sbjct: 521 DKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPKYFLEQAKQ 580

Query: 401 QKSTGFDRRKKNYSSQKS 418
           +K  G + +KK     KS
Sbjct: 581 KKVAGQNSKKKETLKGKS 598


>gi|119351037|gb|ABL63414.1| ATP-dependent RNA helicase [Rattus norvegicus]
          Length = 598

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 93/438 (21%), Positives = 179/438 (40%), Gaps = 23/438 (5%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     +SP+++  +LDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 163 TFQQLDQEYKISPRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 222

Query: 58  PMLTILEKGRAR-----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
           P+L  L++   +     V  P   +         ++++         +          P 
Sbjct: 223 PILMQLKQPTNKGFRALVISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPK 282

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
            ++   +       +    +          +   +        +               +
Sbjct: 283 SSKKFDILVTTPNRLIYLLKQEPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLA 342

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                 +  +FSAT   ++++  +  L N   + +   +S  ET+E   +   ++  K  
Sbjct: 343 CTSPKVRRAMFSATFAYDVEQWCKLNLDNIVSVSIGARNSAVETVEQELLFVGSETGKLL 402

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           A+ + + +  +     ++F    +    L H L  +G +V  IH    Q+ R   + +F+
Sbjct: 403 AMRELVKKGFNPP--VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFR 460

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   ++
Sbjct: 461 AGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTED 520

Query: 353 DIKHIDAIEKLIEKK----VDWLNG--------DLSSLNPPLEKIDIAQHNHARKNNPIP 400
           D   + ++  +I++      +++ G            +  PLE+  I+            
Sbjct: 521 DKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPKYFLEQAKQ 580

Query: 401 QKSTGFDRRKKNYSSQKS 418
           +K  G + +KK     KS
Sbjct: 581 KKVAGQNSKKKETLKGKS 598


>gi|293377452|ref|ZP_06623654.1| putative ATP-dependent RNA helicase DbpA [Enterococcus faecium
           PC4.1]
 gi|292643970|gb|EFF62078.1| putative ATP-dependent RNA helicase DbpA [Enterococcus faecium
           PC4.1]
          Length = 425

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 192/365 (52%), Gaps = 9/365 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F      P +  A+   G+ +PT +Q + IPL+ +  ++ G +QTGTGKT +F+LP+  
Sbjct: 3   NFDIFRFKPFINEALAAKGFKQPTEVQERLIPLIAKGKNIIGQSQTGTGKTHTFLLPLFE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNKK 118
            +   +  V++    I  P+RELAAQ+ +   +  K     + +             N+ 
Sbjct: 63  KINADKEEVQVV---ITAPSRELAAQIYEAATQIAKFSTPEIRVSNFVGGTDKQRQLNRL 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +   V++ TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I S +P   
Sbjct: 120 HHQQPQVVVGTPGRILDMMNEQALKIHTAFAFVVDEADMTLDMGFLNEVDQIASRLPEKL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+     +++NP   E+   +  +E IE+      +   K    +   
Sbjct: 180 QFLVFSATIPEKLRPFLRKYMENPIIEEIKPKAVISEDIEN---WLISTKGKDENQMIYQ 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +       I+F N K++V  +   L+ QG  V  IHG+I  R R +++   +    Q 
Sbjct: 237 LLTIGHPYLAIVFANTKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLEYQY 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N ++P   + +IHR+GRTGR G  G A TL +  D + ID
Sbjct: 297 VVATDLAARGIDIEGVSHVINAEIPEDLDFFIHRVGRTGRNGLKGTAITLYSPNDEQAID 356

Query: 359 AIEKL 363
           AIEKL
Sbjct: 357 AIEKL 361


>gi|257898623|ref|ZP_05678276.1| helicase [Enterococcus faecium Com15]
 gi|257836535|gb|EEV61609.1| helicase [Enterococcus faecium Com15]
          Length = 449

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 192/365 (52%), Gaps = 9/365 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F      P +  A+   G+ +PT +Q + IPL+ +  ++ G +QTGTGKT +F+LP+  
Sbjct: 3   NFDIFRFKPFINEALAAKGFKQPTEVQERLIPLIAKGKNIIGQSQTGTGKTHTFLLPLFE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNKK 118
            +   +  V++    I  P+RELAAQ+ +   +  K     + +             N+ 
Sbjct: 63  KINADKEEVQVV---ITAPSRELAAQIYEAATQIAKFSTPEIRVSNFVGGTDKQRQLNRL 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +   V++ TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I S +P   
Sbjct: 120 HHQQPQVVVGTPGRILDMMNEQALKIHTAFAFVVDEADMTLDMGFLNEVDQIASRLPEKL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+     +++NP   E+   +  +E IE+      +   K    +   
Sbjct: 180 QFLVFSATIPEKLRPFLRKYMENPIIEEIKPKAVISEDIEN---WLISTKGKDENQMIYQ 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +       I+F N K++V  +   L+ QG  V  IHG+I  R R +++   +    Q 
Sbjct: 237 LLTIGHPYLAIVFANTKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLEYQY 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N ++P   + +IHR+GRTGR G  G A TL +  D + ID
Sbjct: 297 VVATDLAARGIDIEGVSHVINAEIPEDLDFFIHRVGRTGRNGLKGTAITLYSPNDEQAID 356

Query: 359 AIEKL 363
           AIEKL
Sbjct: 357 AIEKL 361


>gi|257887499|ref|ZP_05667152.1| helicase [Enterococcus faecium 1,141,733]
 gi|293570504|ref|ZP_06681559.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E980]
 gi|257823553|gb|EEV50485.1| helicase [Enterococcus faecium 1,141,733]
 gi|291609450|gb|EFF38717.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E980]
          Length = 449

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 192/365 (52%), Gaps = 9/365 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F      P +  A+   G+ +PT +Q + IPL+ +  ++ G +QTGTGKT +F+LP+  
Sbjct: 3   NFDIFRFKPFINEALAAKGFKQPTEVQERLIPLIAKGKNIIGQSQTGTGKTHTFLLPLFE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNKK 118
            +   +  V++    I  P+RELAAQ+ +   +  K     + +             N+ 
Sbjct: 63  KINADKEEVQVV---ITAPSRELAAQIYEAATQIAKFSTPEIRVSNFVGGTDKQRQLNRL 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +   V++ TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I S +P   
Sbjct: 120 HHQQPQVVVGTPGRILDMMNEQALKIHTAFAFVVDEADMTLDMGFLNEVDQIASRLPEKL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+     +++NP   E+   +  +E IE+      +   K    +   
Sbjct: 180 QFLVFSATIPEKLRPFLRKYMENPIIEEIKPKAVISEDIEN---WLISTKGKDENQMIYQ 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +       I+F N K++V  +   L+ QG  V  IHG+I  R R +++   +    Q 
Sbjct: 237 LLTIGHPYLAIVFANTKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLEYQY 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N ++P   + +IHR+GRTGR G  G A TL +  D + ID
Sbjct: 297 VVATDLAARGIDIEGVSHVINAEIPEDLDFFIHRVGRTGRNGLKGTAITLYSPNDEQAID 356

Query: 359 AIEKL 363
           AIEKL
Sbjct: 357 AIEKL 361


>gi|241573363|ref|XP_002402985.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215502109|gb|EEC11603.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 431

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 112/369 (30%), Positives = 179/369 (48%), Gaps = 3/369 (0%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA--RV 70
           + A+  A Y  PTPIQ +  P+ L   D+ GIAQTG+GKT +++LP +  +       R 
Sbjct: 3   MSAIRQAQYTVPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAILHISHQPYLERG 62

Query: 71  RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130
             P          L  ++A            +    +G         +  R  ++ I TP
Sbjct: 63  DGPIVTRPRLGPRLGPRLAMTRRSCRCVGWNSRDHELGLRGGRGSEMRRRRWVEICIATP 122

Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190
           GR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQTL++SAT   E
Sbjct: 123 GRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKE 182

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL-LQQLLQSQDTMKNGI 249
           ++ ++E+FL+   +I +      A       +    +  K   L         +     I
Sbjct: 183 VRSLAEDFLKEYVQINIGALQLCANHRILQIIDVCQESEKDTKLLKLLQEIMNERENKTI 242

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
           IF   K+ V  L   + + G+    IHG+  Q  R  +L+ F+ G   ++VA+D+AARGL
Sbjct: 243 IFAETKRKVDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKSPILVATDVAARGL 302

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           D+ D+  V N+D PN +E+Y+HRIGRT R+ + G A+T     + K  + +  ++++   
Sbjct: 303 DVDDIKFVINYDYPNCSEDYVHRIGRTARSNKTGTAYTFFTPHNSKQANELISVLKEANQ 362

Query: 370 WLNGDLSSL 378
            +N  L  +
Sbjct: 363 VVNPKLYEM 371


>gi|158293651|ref|XP_315003.3| AGAP004912-PB [Anopheles gambiae str. PEST]
 gi|157016550|gb|EAA10492.4| AGAP004912-PB [Anopheles gambiae str. PEST]
          Length = 705

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 197/378 (52%), Gaps = 3/378 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F + G    ++       + +PT IQ     + +   D+ GIA+TG+GKT +++LP  
Sbjct: 104 MHFHESGFPQYMLDEFQRQAFKEPTFIQAVGWSIAMSGRDMVGIAKTGSGKTLAYILPAL 163

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                +   AR   P  L+L PTRELA Q+    + +G+   +    + GG     Q   
Sbjct: 164 VHISNQPRIARGDGPIALVLAPTRELAQQIKQVCDDFGRRMGIYNTCVFGGASKYPQESD 223

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG +++I TPGR++D   R    +     LV+DEADRMLDMGF P I+ I S +   R
Sbjct: 224 LRRGVEIVIATPGRLIDFLERETTNLRRCTYLVLDEADRMLDMGFEPQIRKIISQIRPDR 283

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQ 237
           Q L++SAT   E++K++E FL++  +I + + +  A       +    +Y K+       
Sbjct: 284 QVLMWSATWPKEIRKLAEEFLRDYIQINIGSLNLAANENILQIIDCCEEYEKENRLFKLL 343

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              S       IIF   K+ V  + + + +QG+    IHG+  Q+ R  +L+ F+  T  
Sbjct: 344 EQISSQNDGKTIIFVETKRKVDKIVNVIRRQGWRADGIHGDKSQKDRDYVLNTFRRSTNG 403

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A+RGLD+ DV  V NFD PN  E+Y+HRIGRTGR+   G ++T     +    
Sbjct: 404 ILVATDVASRGLDVDDVKFVINFDFPNNTEDYVHRIGRTGRSTNKGTSYTFFTPANSSKA 463

Query: 358 DAIEKLIEKKVDWLNGDL 375
             +  +++    ++N +L
Sbjct: 464 PDLITVLQDANQYINPEL 481


>gi|158293649|ref|XP_001688603.1| AGAP004912-PA [Anopheles gambiae str. PEST]
 gi|157016549|gb|EDO63983.1| AGAP004912-PA [Anopheles gambiae str. PEST]
          Length = 679

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 197/378 (52%), Gaps = 3/378 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F + G    ++       + +PT IQ     + +   D+ GIA+TG+GKT +++LP  
Sbjct: 78  MHFHESGFPQYMLDEFQRQAFKEPTFIQAVGWSIAMSGRDMVGIAKTGSGKTLAYILPAL 137

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                +   AR   P  L+L PTRELA Q+    + +G+   +    + GG     Q   
Sbjct: 138 VHISNQPRIARGDGPIALVLAPTRELAQQIKQVCDDFGRRMGIYNTCVFGGASKYPQESD 197

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG +++I TPGR++D   R    +     LV+DEADRMLDMGF P I+ I S +   R
Sbjct: 198 LRRGVEIVIATPGRLIDFLERETTNLRRCTYLVLDEADRMLDMGFEPQIRKIISQIRPDR 257

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQ 237
           Q L++SAT   E++K++E FL++  +I + + +  A       +    +Y K+       
Sbjct: 258 QVLMWSATWPKEIRKLAEEFLRDYIQINIGSLNLAANENILQIIDCCEEYEKENRLFKLL 317

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              S       IIF   K+ V  + + + +QG+    IHG+  Q+ R  +L+ F+  T  
Sbjct: 318 EQISSQNDGKTIIFVETKRKVDKIVNVIRRQGWRADGIHGDKSQKDRDYVLNTFRRSTNG 377

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A+RGLD+ DV  V NFD PN  E+Y+HRIGRTGR+   G ++T     +    
Sbjct: 378 ILVATDVASRGLDVDDVKFVINFDFPNNTEDYVHRIGRTGRSTNKGTSYTFFTPANSSKA 437

Query: 358 DAIEKLIEKKVDWLNGDL 375
             +  +++    ++N +L
Sbjct: 438 PDLITVLQDANQYINPEL 455


>gi|156932881|ref|YP_001436797.1| ATP-dependent RNA helicase SrmB [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156531135|gb|ABU75961.1| hypothetical protein ESA_00682 [Cronobacter sakazakii ATCC BAA-894]
          Length = 444

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 133/396 (33%), Positives = 209/396 (52%), Gaps = 6/396 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ A+ + G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP + 
Sbjct: 5   TFSELELDDSLLDALQEKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVA++  +  K+ +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVAEHARELAKHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT   D ++  +E  L+ P  +     +   + I   +        K        L
Sbjct: 185 LLFSATLEGDAIKDFAERLLEEPVEVSATPSTRERKKIHQWYYRADNIEHKTAL--LVHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      I+F  +++ V  L + L + G + C + G + Q  R + +    +G + ++
Sbjct: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQVKRNEAIKRLTDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DIPDV HVFN+D+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 IATDVAARGIDIPDVSHVFNYDMPRTADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGK 362

Query: 360 IEKLIEKKVDWLNGDL--SSLNPPLEKIDIAQHNHA 393
           + + + + +     D    +   P EK+       A
Sbjct: 363 VGRYLNEPLKARVIDELRPTTRAPSEKLTGKPSKKA 398


>gi|73957034|ref|XP_536790.2| PREDICTED: similar to DDX19-like protein isoform 1 [Canis
           familiaris]
          Length = 478

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 104/382 (27%), Positives = 177/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 92  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 151

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      R P+ L L PT ELA Q     E+ GK +               + +K+
Sbjct: 152 LSRVEPAE---RYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKI 208

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 209 SEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPKNCQ 268

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V    +  K        L
Sbjct: 269 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNRDEK--FQALCNL 326

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 327 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 386

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 387 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 446

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 447 SMNILNRIQEHFNKKIERLDTD 468


>gi|326931593|ref|XP_003211912.1| PREDICTED: probable ATP-dependent RNA helicase DDX52-like
           [Meleagris gallopavo]
          Length = 814

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 105/376 (27%), Positives = 187/376 (49%), Gaps = 15/376 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     + PKV+  +  AG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 367 TFDQLQKEYKVHPKVIENIQAAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFCI 426

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+LT L++   +      LI+ PTRELA+Q      K  +        +       +   
Sbjct: 427 PLLTHLKQPMNKGFR--ALIISPTRELASQTHRELVKLAEGTGFRIHMIQKASEAAKKFG 484

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++    +    ++  ++E LV+DE+D++ + G   + +      
Sbjct: 485 PKSSKKFDILVTTPNRLIYLLKQDPPAIDLTSVEWLVVDESDKLFEDGKSGFREQLASIF 544

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +   FSAT   ++++  +  L +   + V   +S AET+E   +   ++  K
Sbjct: 545 LACTSHVVRRAFFSATFARDVEEWCKLNLDSIVLVSVGARNSAAETVEQELLFVGSETGK 604

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +        ++F    +    L H L  +G +V  IH +  Q+ R  ++ +
Sbjct: 605 LTAMRELVKKGFAPP--VLVFVQSIERAKELFHELIYEGINVDVIHADKTQQQRDNVVHS 662

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D+P  A  YIHRIGRTGRAG  GKA T   
Sbjct: 663 FRAGKIWVLICTALLARGIDFKGVNMVINYDLPTSAVEYIHRIGRTGRAGHTGKAVTFFT 722

Query: 351 KEDIKHIDAIEKLIEK 366
           ++D   + +I  +I++
Sbjct: 723 EDDKPLLRSIANVIQR 738


>gi|26327389|dbj|BAC27438.1| unnamed protein product [Mus musculus]
          Length = 874

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 131/366 (35%), Positives = 197/366 (53%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 97  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 156

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 157 LKARSAQTGA-RALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHEN 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I   +P   QT+L
Sbjct: 216 PDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVL 275

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + ++  L  P  I ++  S   E ++  F     + +K   LL  L    
Sbjct: 276 FSATLPKLLVEFAQAGLTEPVLIRLDVDSKLNEQLKTSF-LLVREDTKAAVLLYLLQNVV 334

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K +   L   L  QG S   I+  +DQ +R   L+ F       ++ +
Sbjct: 335 RPQDQTVVFVATKHHAEYLTELLMGQGVSCAHIYSALDQTARKINLAKFTHNKCSTLIVT 394

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA +++ ++  +  
Sbjct: 395 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHL 454

Query: 363 LIEKKV 368
            + + V
Sbjct: 455 FLGRSV 460


>gi|332023103|gb|EGI63364.1| Putative ATP-dependent RNA helicase DDX23 [Acromyrmex echinatior]
          Length = 789

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 134/436 (30%), Positives = 218/436 (50%), Gaps = 40/436 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + G   +++  +   GY   TPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L 
Sbjct: 362 SWKESGFPKEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLL 421

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +E+     + P ++IL PTRELA Q+ +   K+G+   +   +++GG+  E Q
Sbjct: 422 WITSLPKIERLEEADQGPYSIILAPTRELAQQIEEETNKFGQPLGIRTVVVVGGLSREEQ 481

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 482 GFRLRMGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 541

Query: 176 -------------------------FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
                                      RQT++F+ATM   +++++  +L+ P  + + + 
Sbjct: 542 VTNLKPDNEDAENEEKLLANYNTKKKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSV 601

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               E  E           +K  +       +  +   IIF NQKK    L   LEK G+
Sbjct: 602 GKPTERTEQIVHIMGEADKRKKLMEILSRGVEPPV---IIFVNQKKGADVLARGLEKLGY 658

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           + C +HG   Q  R   L++ K G+  ++VA+D+A RG+DI DV  V N+D+    E+Y 
Sbjct: 659 NACTLHGGKGQEQREYALASLKSGSKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYT 718

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A +   K+D      +++ I      L   +S+  P L     AQH
Sbjct: 719 HRIGRTGRAGKAGLAISFCTKDDSHLFYDLKQTI------LASPISTCPPELLNHPDAQH 772

Query: 391 NHARKNNPIPQKSTGF 406
                     ++   F
Sbjct: 773 KPGTVVTKKRREEKIF 788


>gi|307201507|gb|EFN81270.1| Probable ATP-dependent RNA helicase DDX23 [Harpegnathos saltator]
          Length = 679

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 134/436 (30%), Positives = 218/436 (50%), Gaps = 40/436 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + G   +++  +   GY   TPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L 
Sbjct: 252 SWKESGFPKEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLL 311

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +E+     + P ++IL PTRELA Q+ +   K+G+   +   +++GG+  E Q
Sbjct: 312 WITSLPKIERLEEADQGPYSIILAPTRELAQQIEEETNKFGQPLGIRTVVVVGGLSREEQ 371

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 372 GFRLRMGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 431

Query: 176 -------------------------FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
                                      RQT++F+ATM   +++++  +L+ P  + + + 
Sbjct: 432 VTNLKPDNEDAENEEKLLANYNTKKKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSV 491

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               E  E           +K  +       +  +   IIF NQKK    L   LEK G+
Sbjct: 492 GKPTERTEQIVHIMGEADKRKKLMEILSRGVEPPV---IIFVNQKKGADVLARGLEKLGY 548

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           + C +HG   Q  R   L++ K G+  ++VA+D+A RG+DI DV  V N+D+    E+Y 
Sbjct: 549 NACTLHGGKGQEQREYALASLKSGSKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYT 608

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A +   K+D      +++ I      L   +S+  P L     AQH
Sbjct: 609 HRIGRTGRAGKAGLAISFCTKDDSHLFYDLKQTI------LASPISTCPPELLNHPDAQH 662

Query: 391 NHARKNNPIPQKSTGF 406
                     ++   F
Sbjct: 663 KPGTVVTKKRREEKIF 678


>gi|126305162|ref|XP_001375627.1| PREDICTED: similar to DEAD Box Protein 5 [Monodelphis domestica]
          Length = 535

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 104/382 (27%), Positives = 177/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 149 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 208

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      + P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 209 LSQVEPLN---KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 265

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 266 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPKDCQ 325

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + + ++  + +P  I++     T +TI+  +V    +  K        L
Sbjct: 326 MLLFSATFEDSVWRFAQKVVPDPNIIKLKREEETLDTIKQYYVMCNNRDEK--FQALCNL 383

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 384 YGAITIAQAMIFCHTRKTAGWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 443

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 444 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 503

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK+D L+ D
Sbjct: 504 SMNILNRIQEHFNKKIDRLDTD 525


>gi|15222526|ref|NP_174479.1| STRS1 (STRESS RESPONSE SUPPRESSOR 1); ATP binding / ATP-dependent
           helicase/ helicase/ nucleic acid binding [Arabidopsis
           thaliana]
 gi|75333350|sp|Q9C551|RH5_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 5
 gi|12321302|gb|AAG50723.1|AC079041_16 p68 RNA helicase, putative [Arabidopsis thaliana]
 gi|12321459|gb|AAG50784.1|AC074309_1 RNA helicase, putative [Arabidopsis thaliana]
 gi|19347812|gb|AAL86356.1| putative p68 RNA helicase [Arabidopsis thaliana]
 gi|21436171|gb|AAM51373.1| putative p68 RNA helicase [Arabidopsis thaliana]
 gi|332193302|gb|AEE31423.1| DEAD-box ATP-dependent RNA helicase 5 [Arabidopsis thaliana]
          Length = 537

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 123/393 (31%), Positives = 195/393 (49%), Gaps = 10/393 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+  L   V+       + KP+PIQ  T P +L   D+ GIA+TG+GKT +F +P + 
Sbjct: 117 TFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIM 174

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                     G ++   P  L+L PTRELA Q++D   + G+   L    + GG     Q
Sbjct: 175 HVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQ 234

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              +  G D++I TPGR+ D      L ++++  +V+DEADRMLDMGF   ++ I S   
Sbjct: 235 ISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTN 294

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCA 233
             RQ ++FSAT   ++ K+++ F+       +  +   +    +         +   +  
Sbjct: 295 KVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRL 354

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +       +      ++F   K     L   L+++G+   +IHGN  Q  R + LS FKE
Sbjct: 355 IALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKE 414

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G+  L+VA+D+AARGLDIPDV  V N+  P   E+Y+HRIGRTGRAG+ G A T     +
Sbjct: 415 GSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLN 474

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
                 +  ++ +    +  DL      ++K +
Sbjct: 475 KGLAGELVNVLREAGQVVPADLLKFGTHVKKKE 507


>gi|323303947|gb|EGA57727.1| Drs1p [Saccharomyces cerevisiae FostersB]
          Length = 755

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 148/486 (30%), Positives = 238/486 (48%), Gaps = 30/486 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L LS  V+  +   GYVKP+PIQ  TIP+ L   D+   A TG+GKTA+F++P++ 
Sbjct: 235 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 294

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            L    A++   R ++L PTRELA QVAD  ++  +    +T  L +GG+    Q + L+
Sbjct: 295 RLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLK 354

Query: 121 RGADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D++I TPGR +DH        ++++EILV+DEADRML+ GF   +  I  L+P  RQ
Sbjct: 355 SRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQ 414

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSS--TAETIEHCFVATYAQYSKKCALLQQ 237
            LLFSATM  +++ +    L+ P RI ++ P    T  T E   +               
Sbjct: 415 NLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLI 474

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                   K  ++F  +K+    L   +   G SV  +HG++ Q  R+  ++ FK   + 
Sbjct: 475 RKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVP 534

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIK 355
           +++ +DLA+RGLDIP +  V N+D+P   E Y+HR+GRT RAGR G++ T V  + +D  
Sbjct: 535 VLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 594

Query: 356 HIDAIEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
            + A  K +E+                 +++  N  + S+N  +E I + +     K   
Sbjct: 595 IVRAAIKSVEENKSLTQGKALGXNVDWVQIEETNKLVESMNDTIEDILVEE-----KEEK 649

Query: 399 IPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
              ++    R+ +N    K  I  +        Q +  + ++  LG           K R
Sbjct: 650 EILRAEMQLRKGENMLKHKKEIQARPRRTW--FQSESDKKNSKVLGALSRNKKVTNSKKR 707

Query: 459 GKLNDK 464
            +   K
Sbjct: 708 KREEAK 713


>gi|239993440|ref|ZP_04713964.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii ATCC 27126]
          Length = 459

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 131/367 (35%), Positives = 199/367 (54%), Gaps = 8/367 (2%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
             L ++P +  A+   G  + +PIQ +++P  LQ  DV G AQTG+GKT  FV+P L  +
Sbjct: 7   KHLDINPAITKALDSQGIYQLSPIQAQSLPEALQGKDVIGQAQTGSGKTLCFVIPALQHV 66

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLERG 122
           E      +     IL PTRELA QVA       KN        +  G P   Q + L+  
Sbjct: 67  EVNDFTTQAI---ILCPTRELADQVAQQCRSAAKNIGNIKVTTLCGGQPMGPQIQSLKHS 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR++DH  + ++ ++N+++ V+DEADRMLDMGF   ++ I    P   QTLL
Sbjct: 124 PHIIVGTPGRVMDHVEKRRIDLSNVKLRVLDEADRMLDMGFEDDLRIIFGQTPKQVQTLL 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT T+++++V++ +L NP   +V +  S     +  +               + + + 
Sbjct: 184 FSATFTEQIERVAKQYLHNPVTCKVESQDSKPAITQLGYNVLPH----TRTQALKAVLTH 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              KN I+FCN+K  V  +   L + GFS   + G+++Q  R  +L  F    +Q++VA+
Sbjct: 240 YQPKNAIVFCNRKVQVNEVVEELIEDGFSAAGLQGDLEQHQRTSVLMQFASDALQVLVAT 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI DV  V N+ V    E +IHRIGRT RAG  G A TLV+ ++   +  IE 
Sbjct: 300 DVAARGLDIDDVACVINYTVSEEPETHIHRIGRTARAGAQGMAVTLVSDDEEHFLRKIEV 359

Query: 363 LIEKKVD 369
           L E  + 
Sbjct: 360 LQESDIP 366


>gi|160380652|sp|A7A0P8|DRS1_YEAS7 RecName: Full=ATP-dependent RNA helicase DRS1; AltName:
           Full=Deficiency of ribosomal subunits protein 1
 gi|151941161|gb|EDN59539.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|190406035|gb|EDV09302.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
 gi|207343227|gb|EDZ70754.1| YLL008Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 754

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 148/486 (30%), Positives = 238/486 (48%), Gaps = 30/486 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L LS  V+  +   GYVKP+PIQ  TIP+ L   D+   A TG+GKTA+F++P++ 
Sbjct: 234 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            L    A++   R ++L PTRELA QVAD  ++  +    +T  L +GG+    Q + L+
Sbjct: 294 RLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLK 353

Query: 121 RGADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D++I TPGR +DH        ++++EILV+DEADRML+ GF   +  I  L+P  RQ
Sbjct: 354 SRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQ 413

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSS--TAETIEHCFVATYAQYSKKCALLQQ 237
            LLFSATM  +++ +    L+ P RI ++ P    T  T E   +               
Sbjct: 414 NLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLI 473

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                   K  ++F  +K+    L   +   G SV  +HG++ Q  R+  ++ FK   + 
Sbjct: 474 RKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVP 533

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIK 355
           +++ +DLA+RGLDIP +  V N+D+P   E Y+HR+GRT RAGR G++ T V  + +D  
Sbjct: 534 VLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 593

Query: 356 HIDAIEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
            + A  K +E+                 +++  N  + S+N  +E I + +     K   
Sbjct: 594 IVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMNDTIEDILVEE-----KEEK 648

Query: 399 IPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
              ++    R+ +N    K  I  +        Q +  + ++  LG           K R
Sbjct: 649 EILRAEMQLRKGENMLKHKKEIQARPRRTW--FQSESDKKNSKVLGALSRNKKVTNSKKR 706

Query: 459 GKLNDK 464
            +   K
Sbjct: 707 KREEAK 712


>gi|149699345|ref|XP_001501014.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19B isoform 1
           [Equus caballus]
          Length = 479

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 106/382 (27%), Positives = 177/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL M
Sbjct: 93  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 152

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      R P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 153 LSQVEPAN---RYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKV 209

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 210 SEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 269

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V    +  K        L
Sbjct: 270 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNRDEK--FQALCNL 327

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 328 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 387

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 388 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 448 SMNILNRIQEHFNKKIERLDTD 469


>gi|171656|gb|AAA34666.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae]
          Length = 722

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 148/486 (30%), Positives = 238/486 (48%), Gaps = 30/486 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L LS  V+  +   GYVKP+PIQ  TIP+ L   D+   A TG+GKTA+F++P++ 
Sbjct: 202 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 261

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            L    A++   R ++L PTRELA QVAD  ++  +    +T  L +GG+    Q + L+
Sbjct: 262 RLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLK 321

Query: 121 RGADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D++I TPGR +DH        ++++EILV+DEADRML+ GF   +  I  L+P  RQ
Sbjct: 322 SRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQ 381

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSS--TAETIEHCFVATYAQYSKKCALLQQ 237
            LLFSATM  +++ +    L+ P RI ++ P    T  T E   +               
Sbjct: 382 NLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLI 441

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                   K  ++F  +K+    L   +   G SV  +HG++ Q  R+  ++ FK   + 
Sbjct: 442 RKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVP 501

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIK 355
           +++ +DLA+RGLDIP +  V N+D+P   E Y+HR+GRT RAGR G++ T V  + +D  
Sbjct: 502 VLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 561

Query: 356 HIDAIEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
            + A  K +E+                 +++  N  + S+N  +E I + +     K   
Sbjct: 562 IVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMNDTIEDILVEE-----KEEK 616

Query: 399 IPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
              ++    R+ +N    K  I  +        Q +  + ++  LG           K R
Sbjct: 617 EILRAEMQLRKGENMLKHKKEIQARPRRTW--FQSESDKKNSKVLGALSRNKKVTNSKKR 674

Query: 459 GKLNDK 464
            +   K
Sbjct: 675 KREEAK 680


>gi|6323021|ref|NP_013093.1| Drs1p [Saccharomyces cerevisiae S288c]
 gi|1706521|sp|P32892|DRS1_YEAST RecName: Full=ATP-dependent RNA helicase DRS1; AltName:
           Full=Deficiency of ribosomal subunits protein 1
 gi|1360171|emb|CAA97452.1| DRS1 [Saccharomyces cerevisiae]
 gi|1495215|emb|CAA62783.1| L1345/DRS1 protein [Saccharomyces cerevisiae]
 gi|285813414|tpg|DAA09310.1| TPA: Drs1p [Saccharomyces cerevisiae S288c]
          Length = 752

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 148/486 (30%), Positives = 238/486 (48%), Gaps = 30/486 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L LS  V+  +   GYVKP+PIQ  TIP+ L   D+   A TG+GKTA+F++P++ 
Sbjct: 232 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 291

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            L    A++   R ++L PTRELA QVAD  ++  +    +T  L +GG+    Q + L+
Sbjct: 292 RLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLK 351

Query: 121 RGADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D++I TPGR +DH        ++++EILV+DEADRML+ GF   +  I  L+P  RQ
Sbjct: 352 SRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQ 411

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSS--TAETIEHCFVATYAQYSKKCALLQQ 237
            LLFSATM  +++ +    L+ P RI ++ P    T  T E   +               
Sbjct: 412 NLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLI 471

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                   K  ++F  +K+    L   +   G SV  +HG++ Q  R+  ++ FK   + 
Sbjct: 472 RKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVP 531

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIK 355
           +++ +DLA+RGLDIP +  V N+D+P   E Y+HR+GRT RAGR G++ T V  + +D  
Sbjct: 532 VLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 591

Query: 356 HIDAIEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
            + A  K +E+                 +++  N  + S+N  +E I + +     K   
Sbjct: 592 IVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMNDTIEDILVEE-----KEEK 646

Query: 399 IPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
              ++    R+ +N    K  I  +        Q +  + ++  LG           K R
Sbjct: 647 EILRAEMQLRKGENMLKHKKEIQARPRRTW--FQSESDKKNSKVLGALSRNKKVTNSKKR 704

Query: 459 GKLNDK 464
            +   K
Sbjct: 705 KREEAK 710


>gi|328699354|ref|XP_001948802.2| PREDICTED: ATP-dependent RNA helicase DDX19A-like [Acyrthosiphon
           pisum]
          Length = 464

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 103/394 (26%), Positives = 169/394 (42%), Gaps = 14/394 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  L L P ++  V + GY  P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL M
Sbjct: 76  SFELLKLHPNLLKGVYEMGYNAPSKIQETALPLLLDNPPQNLIAQSQSGTGKTAAFVLAM 135

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++      + P+ + L PT EL  Q  +   K                    +  K+
Sbjct: 136 LSRVDP---EFQHPQVVCLSPTYELTIQTGEVIAKMSIYCPNIKLRYAVRGENVEKGSKI 192

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E    V             +     N    ++ +    +   G       I  L+P T Q
Sbjct: 193 EEHIIVGTPGKVLDWATKFKFFNPKNIKVFVLDEADIMVDTQGHQDQSFRIRKLLPETCQ 252

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSAT T+++   +         I +     T + I   +V    +  K        +
Sbjct: 253 MMFFSATYTEDVMMFANAIAPMSVIIRLKREEETLDNIRQYYVNCNNKEDK--YNALVNI 310

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC  KK  + L + + +QG +V  + G +    R+ +L  F+EG  +++
Sbjct: 311 YGGVTIGQAMIFCQTKKMALWLINQMAEQGHAVALLSGELTIEQRISVLDRFREGKEKVL 370

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLVA-KE 352
           V +++ +RG+DI  V  V NFD+P         + Y+HRIGRTGR G+ G A  LV+   
Sbjct: 371 VTTNVLSRGIDIEQVTIVINFDLPVTVTLEPDYDTYLHRIGRTGRFGKKGIAINLVSGSS 430

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
           D   +  IE+   K ++ LN +       LE  D
Sbjct: 431 DQFILKQIEERFCKPIECLNTNNVDDMEKLEAED 464


>gi|170039659|ref|XP_001847645.1| ATP-dependent RNA helicase DBP4 [Culex quinquefasciatus]
 gi|167863269|gb|EDS26652.1| ATP-dependent RNA helicase DBP4 [Culex quinquefasciatus]
          Length = 735

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 124/467 (26%), Positives = 199/467 (42%), Gaps = 17/467 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  LS K V  +    Y  PT IQ ++I   LQ  D+   A+TG+GKT +F++P+  
Sbjct: 66  KFSDFPLSKKTVQGLAQGQYRVPTAIQRQSILPALQGKDILAAAKTGSGKTLAFLIPVFE 125

Query: 62  I-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                   R+     LI+ PTRELA Q+ +   K GKN++ T  L+IGG   + +  +L 
Sbjct: 126 KLYTNRWTRLDGLGALIITPTRELALQIFETVAKIGKNHDFTTGLIIGGQNLKFEKSRLH 185

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      +            N+++LV+DEADR LDMGF   +  I   +P TRQT
Sbjct: 186 QLNIIICTPGRLLQHMDTNPLFDCTNLKVLVLDEADRCLDMGFQTAMNAIIENLPTTRQT 245

Query: 181 LLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT T  ++     N               T  +       T     K   L   L 
Sbjct: 246 LLFSATQTKSVKDLARLNLTDPVYIAPHEKEEYTTPSRLQQNYVTVELSEKLTMLWSFLK 305

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                         ++           +    +  ++G ++Q  R KI + F   +   +
Sbjct: 306 SHSKQKIIVFFATCKQVRYHYEIFRKLRPSILLLPLYGGMNQEKRNKIYAEFCSRSNVCL 365

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD P V  V   D P  A  YIHR GRT R    G++  ++  ++ + + A
Sbjct: 366 MATDVASRGLDFPKVNWVVQLDCPEDATQYIHRAGRTARLNTAGESLLVLLPQEEEGVVA 425

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKID--IAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           +    +  ++ +N DL  L  PL KI   +AQ    +            D  K+ + +  
Sbjct: 426 MLGRTKVPINKINVDLKQLFSPLVKIQSFLAQSPELK------------DTAKRAFVAYV 473

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
             + L + + +  + +   +  A SLG     P       +G    K
Sbjct: 474 KSVALMKDKSVFDVSKLDLDAFAKSLGLL-VTPRVRFLARKGGDKAK 519


>gi|74835178|dbj|BAE44472.1| Vasa [Botryllus primigenus]
          Length = 687

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 130/387 (33%), Positives = 211/387 (54%), Gaps = 11/387 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L   +   V  A Y KPTP+Q  +IP++    D+   AQTG+GKTA+F+LP+L 
Sbjct: 232 SFDSANLPETIRENVNKARYTKPTPVQKYSIPIINAGRDLMACAQTGSGKTAAFLLPVLA 291

Query: 62  ILEK------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            + +        +  + P+ +++ PTREL +Q+     K+ +N  +   +  GG   ++Q
Sbjct: 292 GIFRSGLKADSFSEKQTPQAIVVGPTRELVSQIFTEARKFARNSVVQPVVAYGGTSVQSQ 351

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---- 171
            + L RG ++LI TPGR+LD  NRGK+  + +E L++DEADRMLDMGF P I+ +     
Sbjct: 352 LRDLSRGCNILIATPGRLLDFINRGKVGCDCVEYLILDEADRMLDMGFEPEIRKLLGSPG 411

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                +R TL+FSAT  DE+QK++  F++             A +     +       K+
Sbjct: 412 MPDKNSRHTLMFSATFPDEIQKLAHEFMREDFLFLTVGRVGGACSDVTQTLLQVENADKR 471

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L++ L+   +T    ++F + K+N   L   L ++G    +IHG+  QR R   L++F
Sbjct: 472 EKLMELLVDVPETAARTLVFVDTKRNADFLATFLSQEGLPTTSIHGDRQQREREIALTDF 531

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K+G   +++A+ +AARGLDIP V HV N+D+P+  + Y+HRIGRTGR G  G A +  + 
Sbjct: 532 KKGKCPILIATSVAARGLDIPKVEHVINYDLPSEIDEYVHRIGRTGRCGNLGSATSFYSD 591

Query: 352 E-DIKHIDAIEKLIEKKVDWLNGDLSS 377
           + +     ++ K++      +   L S
Sbjct: 592 DKNAALARSLVKVLSDAQQEVPDWLES 618


>gi|300783035|ref|YP_003763326.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
 gi|299792549|gb|ADJ42924.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
          Length = 598

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 129/359 (35%), Positives = 201/359 (55%), Gaps = 3/359 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA  G+ P++V A+ +AG  +   IQ  T+PL +   D+ G A+TG GKT  F +P+L 
Sbjct: 75  TFASFGVKPEIVKALGEAGIERTFAIQELTLPLAMAGDDLIGQARTGMGKTLGFGVPLLH 134

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++        P+ L++ PTREL  QVA++ +  GK+  +    + GG P+E Q + L +
Sbjct: 135 RVQVPGDGT--PQVLVVVPTRELCIQVANDLKGAGKHLGIRTLAIYGGRPYEPQIEALRK 192

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV+I TPGR+LD   +  L++  +  LV+DEAD MLD+GF+P I+ I  +VP  RQT+
Sbjct: 193 GIDVVIGTPGRLLDLAEQQHLVLGKVRGLVLDEADEMLDLGFLPDIERILRMVPDERQTM 252

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +  ++  F            +  +   E      Y  +S     +   +  
Sbjct: 253 LFSATMPGPIITLARTF-LRQPTHIRAEENDASAIHERTTQFVYRAHSMDKPEVIARVLQ 311

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     +IF   K+    +   L ++GF+  A+HG++ Q +R + L  F+ G + ++VA
Sbjct: 312 AEDRGLTMIFSRTKRTAQKVADDLVERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLVA 371

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +D+AARG+DI DV HV N+  P+  + Y+HRIGRTGRAGR G A TLV  +++     I
Sbjct: 372 TDVAARGIDIDDVTHVINYQCPDDEKTYVHRIGRTGRAGRTGVAVTLVDWDEMPRWKLI 430


>gi|291000796|ref|XP_002682965.1| predicted protein [Naegleria gruberi]
 gi|284096593|gb|EFC50221.1| predicted protein [Naegleria gruberi]
          Length = 346

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 113/371 (30%), Positives = 182/371 (49%), Gaps = 28/371 (7%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +GL+  ++  +   G+ KP+ IQ + I  + Q +D+   +Q+GT                
Sbjct: 1   MGLNDDLLRGIYQYGFTKPSAIQQRAIKPITQGNDLIAQSQSGTA--------------- 45

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
                     ++L PTRELA Q        G   +  V   +GG       KKLE G  V
Sbjct: 46  ----------IVLSPTRELAQQTQRVMSYLGDYLHAQVHACVGGNKVGEDIKKLESGVHV 95

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           +  TPGR+ D   +  L   +I++LV+DEAD ML  GF   I      +    Q +L SA
Sbjct: 96  VSGTPGRVYDMMRQQHLNTKHIKLLVLDEADEMLSQGFKEQI-YQIYRLLNNTQIVLISA 154

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           T+  E+ ++++ F+ +P RI V     T E I+  F+A   +  K   L         T+
Sbjct: 155 TLPAEVLEITQQFMTDPIRILVKRDEVTLEGIKQFFIAVEKEDWKFETLCDL--YDSLTV 212

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              +IFCN++  V  L   ++K  F+V  +HG + Q+ R  I+  F++G  ++++ +D+ 
Sbjct: 213 TQAVIFCNKRDKVEWLAKQMKKHNFTVSFMHGQMPQKEREAIMEEFRKGQSRVLITTDVW 272

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARG+D+  V  V N+D+P   ENYIHRIGR+GR GR G A   V + D+  +  IE+   
Sbjct: 273 ARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRYGRKGVAINFVTEMDVGVLKDIEQHYS 332

Query: 366 KKVDWLNGDLS 376
             ++ +   + 
Sbjct: 333 TTIEEMPAKID 343


>gi|91083251|ref|XP_974045.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase
           [Tribolium castaneum]
 gi|270007718|gb|EFA04166.1| hypothetical protein TcasGA2_TC014413 [Tribolium castaneum]
          Length = 425

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 90/375 (24%), Positives = 166/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 45  FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 104

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE     V +             ++  + F KY  N  + V      I  + +  K    
Sbjct: 105 LEPTENVVYVLVMCHTRELAFQISKEYERFSKYMPNIKVGVFFGGLSIQKDEEVLKNNCP 164

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L +    ++ +    +  +     +Q I    P  +Q ++
Sbjct: 165 HIVVGTPGRILALVRSKKLNLKHLKHFILDECDKMLELLDMRRDVQEIYRNTPHGKQVMM 224

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  + V+  +               +  K   L +      
Sbjct: 225 FSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFEL--LDV 282

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F    IH  ++Q  R+     FK+   +++VA+
Sbjct: 283 LEFNQVVIFVKSVQRCIALAQLLTEQNFPAIGIHRGMNQEERLSRYQQFKDFQKRILVAT 342

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V++E D K ++ ++
Sbjct: 343 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSEESDAKILNEVQ 402

Query: 362 KLIEKKVDWLNGDLS 376
              +  +  L  ++ 
Sbjct: 403 DRFDVNITELPDEID 417


>gi|329295987|ref|ZP_08253323.1| ATP-dependent RNA helicase RhlE [Plautia stali symbiont]
          Length = 408

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 163/410 (39%), Positives = 241/410 (58%), Gaps = 8/410 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVAEQGYREPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLL 60

Query: 61  TILEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L +        R  R LIL PTRELAAQV +N  +Y +  N+   ++ GG+    Q  
Sbjct: 61  QRLSEKPAAARGRRPVRALILTPTRELAAQVGENVREYSQYLNMRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVLI TPGR+LD  ++  + ++ +EILV+DEAD MLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLIATPGRLLDLAHQNAVDLSQVEILVLDEADCMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++E  L NP+++EV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDEIKALAEKLLTNPEQVEVARRNTASEQV---SQQVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+  +D  +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK G I+
Sbjct: 238 LMIGRDNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN AE+Y+HRIGRTGRA   G A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGAALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
             IE+L+++++    L G     +   E I   +    R          G
Sbjct: 358 RDIERLLKREIPRIALPGFEPDPSIKAEPIQNGRQQQPRGRGQGRAPGQG 407


>gi|328708524|ref|XP_001949320.2| PREDICTED: ATP-dependent RNA helicase DDX54-like, partial
           [Acyrthosiphon pisum]
          Length = 478

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 124/365 (33%), Positives = 199/365 (54%), Gaps = 2/365 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V+  VL  GY  PTPIQ KTIP+ L+  DV  +A+TG+GKTA F++PM   
Sbjct: 30  FQAMGLSFPVLKGVLKRGYKVPTPIQRKTIPIALENRDVVAMARTGSGKTACFLIPMFEK 89

Query: 63  LEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L +            IL PTRELA Q     ++ GK  NL  A+++GG P EAQ   +  
Sbjct: 90  LTQHTVNGHRGIRALILSPTRELAVQTLKFLKEIGKFTNLKSAVILGGDPMEAQFSTMHS 149

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR L       L +  I+ +V DEADR+ +MGF   +  I + +P TRQTL
Sbjct: 150 APDIVVATPGRFLHLCVEMSLKLPYIQYVVFDEADRLFEMGFGEQLTEIIARLPETRQTL 209

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L + +   L +P  I ++  S   +T+   F+    +      L       
Sbjct: 210 LFSATLPKVLVQFARAGLSDPVLIRLDVESKIPDTLGLGFLNVRPEERDGALLCLLKYVV 269

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      IIF   K +V  +   L+ Q      I+ ++D  +R    S F+ G+++ ++ 
Sbjct: 270 KPDSM-TIIFAPTKHHVDFIHLLLDFQDIPNTFIYSDLDPTARKINASKFQTGSVKTLIT 328

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP +  V N+  P +++ ++HR+GR  RAG+ G+A++LV ++++ ++  + 
Sbjct: 329 TDIAARGIDIPQLDTVINYTFPAKSKLFVHRVGRCARAGKVGQAYSLVTRDEMCYLLDLH 388

Query: 362 KLIEK 366
             + +
Sbjct: 389 LFLGR 393


>gi|328708487|ref|XP_003243704.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Acyrthosiphon
           pisum]
          Length = 777

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 124/365 (33%), Positives = 199/365 (54%), Gaps = 2/365 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V+  VL  GY  PTPIQ KTIP+ L+  DV  +A+TG+GKTA F++PM   
Sbjct: 30  FQAMGLSFPVLKGVLKRGYKVPTPIQRKTIPIALENRDVVAMARTGSGKTACFLIPMFEK 89

Query: 63  LEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L +            IL PTRELA Q     ++ GK  NL  A+++GG P EAQ   +  
Sbjct: 90  LTQHTVNGHRGIRALILSPTRELAVQTLKFLKEIGKFTNLKSAVILGGDPMEAQFSTMHS 149

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR L       L +  I+ +V DEADR+ +MGF   +  I + +P TRQTL
Sbjct: 150 APDIVVATPGRFLHLCVEMSLKLPYIQYVVFDEADRLFEMGFGEQLTEIIARLPETRQTL 209

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L + +   L +P  I ++  S   +T+   F+    +      L       
Sbjct: 210 LFSATLPKVLVQFARAGLSDPVLIRLDVESKIPDTLGLGFLNVRPEERDGALLCLLKYVV 269

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      IIF   K +V  +   L+ Q      I+ ++D  +R    S F+ G+++ ++ 
Sbjct: 270 KPDSM-TIIFAPTKHHVDFIHLLLDFQDIPNTFIYSDLDPTARKINASKFQTGSVKTLIT 328

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP +  V N+  P +++ ++HR+GR  RAG+ G+A++LV ++++ ++  + 
Sbjct: 329 TDIAARGIDIPQLDTVINYTFPAKSKLFVHRVGRCARAGKVGQAYSLVTRDEMCYLLDLH 388

Query: 362 KLIEK 366
             + +
Sbjct: 389 LFLGR 393


>gi|123325507|gb|ABM74410.1| vasa protein [Botrylloides violaceus]
          Length = 630

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 136/388 (35%), Positives = 205/388 (52%), Gaps = 12/388 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L   V   V  A Y KPTP+Q  +IP+V    D+   AQTG+GKTA+F+LP+L 
Sbjct: 201 TFDDAQLPETVRDNVRKANYTKPTPVQKYSIPIVNGDRDLMACAQTGSGKTAAFLLPVLA 260

Query: 62  ILEKGRAR-------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            + +   +        + P+ +I+ PTREL  Q+     K+ ++  +   +  GG    +
Sbjct: 261 GIFRNGLKSVDSFSGKQTPQAIIVGPTRELVYQIFIEARKFARSTMIKPVVAYGGTSVRS 320

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
           Q   L RG ++LI TPGR+LD   +GK+    +E L++DEADRMLDMGF P I+      
Sbjct: 321 QLSDLSRGCNILIATPGRLLDFITKGKVSCECVEYLILDEADRMLDMGFEPEIRRLVAAP 380

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                 TR TL+FSAT  DE+QK++  FL+             A +     +    Q  K
Sbjct: 381 GMPDKNTRHTLMFSATFPDEIQKLAHEFLREDFLFLTVRRVGGACSDVTQSMVQIDQDDK 440

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L++ L    +T    ++F + K+N   L   L ++G    +IHG+  QR R   L +
Sbjct: 441 RDKLMELLADVAETAARTLVFVDTKRNADFLATFLSQEGLPTTSIHGDRQQRERETALLD 500

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   +++A+ +AARGLDIP V HV N+D+P+  + Y+HRIGRTGR G  G A +  +
Sbjct: 501 FKNGRCPILIATSVAARGLDIPKVEHVINYDLPSDIDEYVHRIGRTGRCGNLGSATSFYS 560

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSS 377
            + D     ++ K++      + G L S
Sbjct: 561 DDKDNALARSLVKVLADAQQDVPGWLES 588


>gi|15239187|ref|NP_201391.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|108861887|sp|Q9SB89|RH27_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 27
 gi|2827700|emb|CAA16673.1| DEAD box ATP dependent helicase protein [Arabidopsis thaliana]
 gi|9759574|dbj|BAB11137.1| ATP-dependent RNA helicase-like [Arabidopsis thaliana]
 gi|16649121|gb|AAL24412.1| ATP-dependent RNA helicase-like [Arabidopsis thaliana]
 gi|24899721|gb|AAN65075.1| ATP-dependent RNA helicase-like [Arabidopsis thaliana]
 gi|332010738|gb|AED98121.1| DEAD-box ATP-dependent RNA helicase 27 [Arabidopsis thaliana]
          Length = 633

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 119/468 (25%), Positives = 211/468 (45%), Gaps = 19/468 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L LS     ++ + G+ + T IQ K IP ++   DV G A+TG+GKT +F++P + 
Sbjct: 155 TFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVE 214

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNKKL 119
           +L + +   R    + ++ PTRELA Q     ++  K ++ TV  ++ G           
Sbjct: 215 LLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILA 274

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    ++      +    N    +  N++ LV+DEADR+L+  F   ++ I +L+P TRQ
Sbjct: 275 KGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQ 334

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT + +++ ++   L +P  I+V+                    + +   L   L
Sbjct: 335 TSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLLTFL 394

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +     K  ++F +  K+            F    I G IDQ  R      F +    ++
Sbjct: 395 KRFQGKKKIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAETGIL 454

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHID 358
           + +++AARGLD P V  +  +D P+   +YIHR+GRT R  G  GKA  ++  +++K I 
Sbjct: 455 LCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQELKFIQ 514

Query: 359 AIE--KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            ++  K+  ++ ++    L  + P +E  ++   N+A K +            K+ Y + 
Sbjct: 515 YLKAAKIPVEEHEFEEKKLLDVKPFVE--NLISENYALKESA-----------KEAYKTY 561

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            S       + +  + Q      A S GF  + P   L  +RG    K
Sbjct: 562 ISGYDSHSMKDVFNVHQLNLTEVATSFGF-SDPPKVALKIDRGGYRSK 608


>gi|300857956|ref|YP_003782939.1| hypothetical protein cpfrc_00538 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685410|gb|ADK28332.1| hypothetical protein cpfrc_00538 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302205685|gb|ADL10027.1| Putative ATP-dependent RNA helicase [Corynebacterium
           pseudotuberculosis C231]
 gi|302330237|gb|ADL20431.1| Putative ATP-dependent RNA helicase [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275920|gb|ADO25819.1| Putative ATP-dependent RNA helicase [Corynebacterium
           pseudotuberculosis I19]
          Length = 441

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 142/433 (32%), Positives = 220/433 (50%), Gaps = 8/433 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG++ ++V A+ + G      IQ  T+P+ L   D+ G A+TG GKT  F +P+L 
Sbjct: 9   TFAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGRARTGMGKTLGFGVPLLD 68

Query: 62  ILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +            PR L++ PTRELA QV ++ E+  +   + V  + GG P+E Q + 
Sbjct: 69  RVFDAADVAELDGTPRALVVVPTRELAQQVGEDLERAARRTPVRVTTVYGGRPYEEQIQV 128

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G DV++ TPGR++D   +G L ++++ ILV+DEAD MLD+GF P I+ +   +    
Sbjct: 129 LTAGVDVVVGTPGRLIDLHQQGNLTLDHVAILVLDEADEMLDLGFFPDIEKLLGALKHQH 188

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM   +  ++  F+  P  I     +++        V   A    K A+  + 
Sbjct: 189 QTLLFSATMPGPVLTLARTFMSRPIHIRAEEVNASHTHASIEQVVFQAHRMDKTAITARA 248

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ+++     IIF   K+    L   L  +GF V  +HG++ Q +R   L  F+ G + +
Sbjct: 249 LQAKERG-KTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAARELSLGMFRNGRVDI 307

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI DV HV N+  P+    Y+HRIGRTGRAG  G A TLV  +++    
Sbjct: 308 LVATDVAARGLDIDDVTHVINYQTPDAPMTYVHRIGRTGRAGHTGTAITLVGYDELIKWK 367

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI----PQKSTGFDRRKKNYS 414
            I   +           S+     + + I +        P+      +ST   RR  N  
Sbjct: 368 LISDELGLDTPAPPQWFSTSPELFDALSIPETAGETVGQPLKVAGSSRSTIKSRRTGNQR 427

Query: 415 SQKSHIPLKESEK 427
           S  +    +   +
Sbjct: 428 STDAKPTTRRHRR 440


>gi|3986285|dbj|BAA34993.1| DjVLGA [Dugesia japonica]
          Length = 726

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 126/376 (33%), Positives = 198/376 (52%), Gaps = 15/376 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L L P V   +    Y +PTP+Q   +P+++QR D+   AQTG+GKTA+F++P+L+
Sbjct: 212 SFLELKLHPIVSHNISLTQYTRPTPVQRYAVPIIMQRRDLMACAQTGSGKTAAFLIPLLS 271

Query: 62  ILE---------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
           ++              +   P  LIL PTRELA Q+ D   K+     +   ++ GG   
Sbjct: 272 MMYQDGPGNSLSHSGYKKEYPVALILAPTRELAVQIYDEARKFSYRSLVRPCVVYGGRDI 331

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q + + +G ++L+ TPGR+ D   R K+ ++ I  LV+DEADRMLDMGF P I+ I  
Sbjct: 332 RGQLQDISQGCNMLVATPGRLSDMLERCKIGLDCIRYLVLDEADRMLDMGFEPQIRKIVE 391

Query: 173 LVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
                        +FSAT   E+Q ++ +FL++   + V    ST++ I    V      
Sbjct: 392 QTNMPPPGQRQTLMFSATFPREIQMLASDFLKDYLFLRVGKVGSTSQNITQRIVYVDENE 451

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            +    L  +L   D+    ++F   K+    L   L  +G  V +IHG+  Q  R   L
Sbjct: 452 KR--DHLLDILTDIDSDSLILVFVETKRGADALEGFLHTEGSCVASIHGDRSQSDRELAL 509

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +F+EG+  ++VA+ +AARGLDIP+V  V N+D+P   E Y+HRIGRTGR G  G+A + 
Sbjct: 510 QSFREGSTPILVATRVAARGLDIPNVKFVINYDLPTDIEEYVHRIGRTGRVGNLGEAISF 569

Query: 349 VAKEDIKHIDAIEKLI 364
              ++      +  ++
Sbjct: 570 YTDKNNNVAKELVDIL 585


>gi|296083374|emb|CBI23263.3| unnamed protein product [Vitis vinifera]
          Length = 628

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 127/413 (30%), Positives = 206/413 (49%), Gaps = 12/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+  L   V+       + +P+PIQ    P +L   D  GIA TG+GKT +F +P + 
Sbjct: 211 SFAESKLPDDVLECCR--NFSQPSPIQSHAWPFLLDHRDFIGIAATGSGKTLAFGVPAMM 268

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +   ++   P  L+L PTRELA Q++D   + GK+  +    L GG     Q  
Sbjct: 269 HVLSKRKSKTSKGVNPLCLVLSPTRELAQQISDVLCEAGKHCGVKSVCLYGGTSKGPQIS 328

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G D++I TPGR+ D    G   +  +  +V+DEADRMLDMGF P +++I S     
Sbjct: 329 SLKSGVDIVIGTPGRLKDLIEMGVCCLTEVSFVVLDEADRMLDMGFEPEVRSILSQTCPA 388

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRI--EVNTPSSTAETIEHCFVATYAQYSKKCALL 235
           RQ ++FSAT    + ++++ F+          +   +    +         +   +  L 
Sbjct: 389 RQMVMFSATWPLPVHQLAQEFMDPNPVKVVIGSEDLAANHDVMQIVEVLDDRSRDERLLT 448

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 +      ++F   KK    + + L+++G++V +IHG+  Q++R   LS FK+G+
Sbjct: 449 LLGKYHKSQRNRVLVFVLYKKEAARVENMLQRRGWNVVSIHGDKAQQARTAALSLFKKGS 508

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             LM+A+D+AARGLDIPDV  V N+  P   E+Y+HRIGRTGRAG+ G A T   +E+  
Sbjct: 509 CPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFMQENKG 568

Query: 356 HIDAIEKLIEKKVDWLNGDL----SSLNPPLEKIDIAQHNHARKNNPIPQKST 404
               +  ++++    +  DL    + +     K+  A       + P  +K T
Sbjct: 569 LAGELVNVLKEAGQIVPADLLKFGTHVKKKESKLYGAHFREIAADAPKSKKIT 621


>gi|195484183|ref|XP_002090584.1| GE13195 [Drosophila yakuba]
 gi|194176685|gb|EDW90296.1| GE13195 [Drosophila yakuba]
          Length = 821

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 125/433 (28%), Positives = 204/433 (47%), Gaps = 34/433 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +++ G   +++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L+
Sbjct: 394 SWSESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLS 453

Query: 62  ILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            ++            + P  +I+ PTRELA Q+ +   K+G+   +   +++GG+  E Q
Sbjct: 454 WIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQ 513

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 514 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 573

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            T           +     +    +  ++  + T +                        
Sbjct: 574 VTNLKPDTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSV 633

Query: 215 -ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            +  E      Y             + S+      IIF NQKK    L   LEK G++ C
Sbjct: 634 GKPTERTEQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSC 693

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            +HG   Q  R   L+  K G   ++VA+D+A RG+DI DV  V N+D+    E+Y HRI
Sbjct: 694 TLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRI 753

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           GRTGRAG+ G A + V K+D      +++ +          +S+  P L     AQH   
Sbjct: 754 GRTGRAGKTGCAISFVTKDDSALFYDLKQCVSA------SPVSTCPPELMNHPEAQHKPG 807

Query: 394 RKNNPIPQKSTGF 406
                  ++   F
Sbjct: 808 TVVTKKRREEKIF 820


>gi|225463253|ref|XP_002274688.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 549

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 127/413 (30%), Positives = 206/413 (49%), Gaps = 12/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+  L   V+       + +P+PIQ    P +L   D  GIA TG+GKT +F +P + 
Sbjct: 132 SFAESKLPDDVLECCR--NFSQPSPIQSHAWPFLLDHRDFIGIAATGSGKTLAFGVPAMM 189

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +   ++   P  L+L PTRELA Q++D   + GK+  +    L GG     Q  
Sbjct: 190 HVLSKRKSKTSKGVNPLCLVLSPTRELAQQISDVLCEAGKHCGVKSVCLYGGTSKGPQIS 249

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G D++I TPGR+ D    G   +  +  +V+DEADRMLDMGF P +++I S     
Sbjct: 250 SLKSGVDIVIGTPGRLKDLIEMGVCCLTEVSFVVLDEADRMLDMGFEPEVRSILSQTCPA 309

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRI--EVNTPSSTAETIEHCFVATYAQYSKKCALL 235
           RQ ++FSAT    + ++++ F+          +   +    +         +   +  L 
Sbjct: 310 RQMVMFSATWPLPVHQLAQEFMDPNPVKVVIGSEDLAANHDVMQIVEVLDDRSRDERLLT 369

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 +      ++F   KK    + + L+++G++V +IHG+  Q++R   LS FK+G+
Sbjct: 370 LLGKYHKSQRNRVLVFVLYKKEAARVENMLQRRGWNVVSIHGDKAQQARTAALSLFKKGS 429

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             LM+A+D+AARGLDIPDV  V N+  P   E+Y+HRIGRTGRAG+ G A T   +E+  
Sbjct: 430 CPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFMQENKG 489

Query: 356 HIDAIEKLIEKKVDWLNGDL----SSLNPPLEKIDIAQHNHARKNNPIPQKST 404
               +  ++++    +  DL    + +     K+  A       + P  +K T
Sbjct: 490 LAGELVNVLKEAGQIVPADLLKFGTHVKKKESKLYGAHFREIAADAPKSKKIT 542


>gi|147777235|emb|CAN76636.1| hypothetical protein VITISV_010658 [Vitis vinifera]
          Length = 539

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 127/413 (30%), Positives = 206/413 (49%), Gaps = 12/413 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+  L   V+       + +P+PIQ    P +L   D  GIA TG+GKT +F +P + 
Sbjct: 122 SFAESKLPDDVLECCR--NFSQPSPIQSHAWPFLLDHRDFIGIAATGSGKTLAFGVPAMM 179

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +   ++   P  L+L PTRELA Q++D   + GK+  +    L GG     Q  
Sbjct: 180 HVLSKRKSKTSKGVNPLCLVLSPTRELAQQISDVLCEAGKHCGVKSVCLYGGTSKGPQIS 239

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G D++I TPGR+ D    G   +  +  +V+DEADRMLDMGF P +++I S     
Sbjct: 240 SLKSGVDIVIGTPGRLKDLIEMGVCCLTEVSFVVLDEADRMLDMGFEPEVRSILSQTCPA 299

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRI--EVNTPSSTAETIEHCFVATYAQYSKKCALL 235
           RQ ++FSAT    + ++++ F+          +   +    +         +   +  L 
Sbjct: 300 RQMVMFSATWPLPVHQLAQEFMDPNPVKVVIGSEDLAANHDVMQIVEVLDDRSRDERLLT 359

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 +      ++F   KK    + + L+++G++V +IHG+  Q++R   LS FK+G+
Sbjct: 360 LLGKYHKSQRNRVLVFVLYKKEAARVENMLQRRGWNVVSIHGDKAQQARTAALSLFKKGS 419

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             LM+A+D+AARGLDIPDV  V N+  P   E+Y+HRIGRTGRAG+ G A T   +E+  
Sbjct: 420 CPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFMQENKG 479

Query: 356 HIDAIEKLIEKKVDWLNGDL----SSLNPPLEKIDIAQHNHARKNNPIPQKST 404
               +  ++++    +  DL    + +     K+  A       + P  +K T
Sbjct: 480 LAGELVNVLKEAGQIVPADLLKFGTHVKKKESKLYGAHFREIAADAPKSKKIT 532


>gi|317138177|ref|XP_001816731.2| ATP-dependent RNA helicase has1 [Aspergillus oryzae RIB40]
 gi|91206843|sp|Q2UUN6|HAS1_ASPOR RecName: Full=ATP-dependent RNA helicase has1
          Length = 596

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 120/412 (29%), Positives = 201/412 (48%), Gaps = 13/412 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS K +  +   G+   T +Q +TIP +L   DV G A+TG+GKT SF++P +
Sbjct: 119 VKFTELGLSEKTMKGIEGMGFETMTEVQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAI 178

Query: 61  TILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L   R + R     +I+ PTRELA Q+     +   +++ T  ++IGG    A+ +KL
Sbjct: 179 EMLSALRFKPRNGTGAIIVSPTRELALQIFGQVRELLAHHSQTYGIVIGGANRRAEAEKL 238

Query: 120 ERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-VPFT 177
            +G ++L+ TPGR +    N    +  N+  L+IDEADR+L++GF   ++ I  +     
Sbjct: 239 MKGVNLLVATPGRLLDHLQNTQGFVFKNLRTLIIDEADRILEVGFEDEMRQIAKILPSEN 298

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T+E          + K  LL  
Sbjct: 299 RQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFLLLF 358

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  I+F +   +V      L      V  +HG   Q+ R      F      
Sbjct: 359 SFLKRNLKKKIIVFLSSCNSVKYYGELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQG 418

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKH 356
            ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R     G++   +   ++  
Sbjct: 419 TLICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGSNGKGRSLMFLQPSEVGF 478

Query: 357 IDAIEKLIEKKVDWLNGDLS-----SLNPPLEKIDIAQHNHARKNNPIPQKS 403
           +  ++   E +V  +  D       ++   LEK+ I Q+ +  K+     +S
Sbjct: 479 LKHLK---EARVPVVEFDFPTQKIVNVQSQLEKL-IGQNYYLNKSAKEGYRS 526


>gi|83764585|dbj|BAE54729.1| unnamed protein product [Aspergillus oryzae]
          Length = 531

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 120/412 (29%), Positives = 201/412 (48%), Gaps = 13/412 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS K +  +   G+   T +Q +TIP +L   DV G A+TG+GKT SF++P +
Sbjct: 54  VKFTELGLSEKTMKGIEGMGFETMTEVQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAI 113

Query: 61  TILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L   R + R     +I+ PTRELA Q+     +   +++ T  ++IGG    A+ +KL
Sbjct: 114 EMLSALRFKPRNGTGAIIVSPTRELALQIFGQVRELLAHHSQTYGIVIGGANRRAEAEKL 173

Query: 120 ERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-VPFT 177
            +G ++L+ TPGR +    N    +  N+  L+IDEADR+L++GF   ++ I  +     
Sbjct: 174 MKGVNLLVATPGRLLDHLQNTQGFVFKNLRTLIIDEADRILEVGFEDEMRQIAKILPSEN 233

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T+E          + K  LL  
Sbjct: 234 RQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFLLLF 293

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  I+F +   +V      L      V  +HG   Q+ R      F      
Sbjct: 294 SFLKRNLKKKIIVFLSSCNSVKYYGELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQG 353

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKH 356
            ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R     G++   +   ++  
Sbjct: 354 TLICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGSNGKGRSLMFLQPSEVGF 413

Query: 357 IDAIEKLIEKKVDWLNGDLS-----SLNPPLEKIDIAQHNHARKNNPIPQKS 403
           +  ++   E +V  +  D       ++   LEK+ I Q+ +  K+     +S
Sbjct: 414 LKHLK---EARVPVVEFDFPTQKIVNVQSQLEKL-IGQNYYLNKSAKEGYRS 461


>gi|320033151|gb|EFW15100.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Coccidioides
           posadasii str. Silveira]
          Length = 820

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 118/435 (27%), Positives = 200/435 (45%), Gaps = 37/435 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + GL  +++  +   GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 381 SWGESGLPKRLLEIIDKVGYKDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 440

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                    E    +   P  +IL PTRELA Q+ +   K+       V  ++GG   E 
Sbjct: 441 YIAELPRLDEFEWRKSDGPYAIILAPTRELAQQIENEARKFCNPLGFNVVSIVGGHSLEE 500

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q+  L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 501 QSFSLRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 560

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA----------- 223
           P + +                       ++  + T +  +                    
Sbjct: 561 PVSNEKPDTEEAEDARAMSQHLGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 620

Query: 224 -------------TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
                          +   K+   L  +L S +     I+F N K+N   +   +++ G+
Sbjct: 621 IGEAVDTVEQRVEFISGEDKRKKRLADILASGEFRPPIIVFVNIKRNCDAVARDIKQMGY 680

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+ DV  V NF++    E+Y 
Sbjct: 681 SSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVSDVSLVVNFNMATNIESYT 740

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ 
Sbjct: 741 HRIGRTGRAGKSGVAITFLGNEDADVMYDLKQML------MKSSISRVPEELRKHEAAQS 794

Query: 391 NHARKNNPIPQKSTG 405
              +      +   G
Sbjct: 795 KPTKAGGGQKRLDEG 809


>gi|262340963|ref|YP_003283818.1| ATP-dependent RNA helicase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272300|gb|ACY40208.1| ATP-dependent RNA helicase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 551

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 122/373 (32%), Positives = 204/373 (54%), Gaps = 8/373 (2%)

Query: 2   DFADLGL-SPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPM 59
            F +    +  ++ A+   G+  PT IQ K IP +L    DV  +AQTGTGKTA+F LP+
Sbjct: 4   TFKEYNFFNKNILKALEAIGFQYPTTIQEKVIPFLLSSERDVIALAQTGTGKTAAFGLPI 63

Query: 60  LTILEKGRARVRMPRTLILEPTRE-LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  +      + +P+  IL PTRE       D +        + +  L GG+  ++Q K 
Sbjct: 64  IQKVNF---DLSIPQAFILCPTRELCVQITRDFYRFSKFLSTIKIISLYGGVSIDSQIKS 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+    ++I TPGRI+D   R KL +  I+ L++DEAD ML+MGF   +  I  ++P  R
Sbjct: 121 LQNKTHIIIGTPGRIIDLIKRKKLHLEKIKYLILDEADEMLNMGFKEELDYIVKMLPKNR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q+LLFSATM+  +  ++  +L +P  I     +  ++ ++H +        K  A   + 
Sbjct: 181 QSLLFSATMSKYMNAIARTYLTDPVEIIAGQKNIVSDGVKHIYYMVGHLNKKYSA--LKR 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   +    GIIFC  KK    +   L K G++  A++G++ Q  R  +++ F+   +Q 
Sbjct: 239 IVDINPGIYGIIFCETKKETKEIAEYLIKDGYNADALYGDLSQTQRESVMNRFRNKNLQF 298

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+ ++ HV N+++P  ++ YIHR GRTGRAG  G +  ++  ++ +++ 
Sbjct: 299 LVATDVAARGLDVHNITHVINYNLPKESDIYIHRSGRTGRAGNSGISVCIIHSKETRNLK 358

Query: 359 AIEKLIEKKVDWL 371
             EK I K  + +
Sbjct: 359 EFEKRIGKSFERV 371


>gi|303320765|ref|XP_003070377.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240110073|gb|EER28232.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28, putative
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 827

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 118/435 (27%), Positives = 200/435 (45%), Gaps = 37/435 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + GL  +++  +   GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 388 SWGESGLPKRLLEIIDKVGYKDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 447

Query: 62  I-------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                    E    +   P  +IL PTRELA Q+ +   K+       V  ++GG   E 
Sbjct: 448 YIAELPRLDEFEWRKSDGPYAIILAPTRELAQQIENEARKFCNPLGFNVVSIVGGHSLEE 507

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q+  L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 508 QSFSLRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 567

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA----------- 223
           P + +                       ++  + T +  +                    
Sbjct: 568 PVSNEKPDTEEAEDARAMSQHLGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGN 627

Query: 224 -------------TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
                          +   K+   L  +L S +     I+F N K+N   +   +++ G+
Sbjct: 628 IGEAVDTVEQRVEFISGEDKRKKRLADILASGEFRPPIIVFVNIKRNCDAVARDIKQMGY 687

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+ DV  V NF++    E+Y 
Sbjct: 688 SSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVSDVSLVVNFNMATNIESYT 747

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HRIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ 
Sbjct: 748 HRIGRTGRAGKSGVAITFLGNEDADVMYDLKQML------MKSSISRVPEELRKHEAAQS 801

Query: 391 NHARKNNPIPQKSTG 405
              +      +   G
Sbjct: 802 KPTKAGGGQKRLDEG 816


>gi|114053201|ref|NP_001039695.1| ATP-dependent RNA helicase DDX19B [Bos taurus]
 gi|82571656|gb|AAI10250.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19B [Bos taurus]
          Length = 484

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL M
Sbjct: 98  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 157

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      R P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 158 LSQVEPAN---RHPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 214

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 215 SEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 274

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        +
Sbjct: 275 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNSRDEK--FQALCNI 332

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 333 YGAITIAQAMIFCHSRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGKEKVL 392

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 393 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 452

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 453 SMNILNRIQEHFNKKIERLDTD 474


>gi|300707737|ref|XP_002996065.1| hypothetical protein NCER_100895 [Nosema ceranae BRL01]
 gi|239605329|gb|EEQ82394.1| hypothetical protein NCER_100895 [Nosema ceranae BRL01]
          Length = 528

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 131/418 (31%), Positives = 213/418 (50%), Gaps = 25/418 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F       +V+       +  PTPIQ +  P+ L   D+ GIAQTG+GKT SFVLP  
Sbjct: 127 VKFEHAPFENEVLNNFKLKAFTSPTPIQAQGWPMALTGKDMVGIAQTGSGKTLSFVLPAL 186

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +    +        P  L+L PTREL  Q+ D F++Y + +N+    + GG+    Q + 
Sbjct: 187 IHARAQIPLRSGDGPIVLVLAPTRELCLQIKDVFDEYCRFFNMRCTAVYGGVSSYTQKRD 246

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +  G +V++  PGR++D   +G L  N +  LV+DEADRMLDMGF P ++ I       R
Sbjct: 247 ISMGCEVVVGCPGRLIDLNEQGALHFNRVTFLVLDEADRMLDMGFEPQLKKIIVNTNPDR 306

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+++++EN+++N  ++ + +            V+    + K  A     
Sbjct: 307 QTLMWSATWPKEVRRLAENYMKNFVQLTIGSVELKTNIKIKQIVSVIDSHEK--ANKLHE 364

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             ++   +  IIF N K+   NL   L ++G+   AIHG+  Q  R +I+S+F+ G   +
Sbjct: 365 SLNEKKNEKVIIFANTKRMCDNLEDDLSRRGYKAVAIHGDKSQNIRDRIISDFRSGYKNI 424

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIKHI 357
           ++A+D+AARGLDI +V  V N+D PN  E+Y+HRIGRT R     G + +    E+    
Sbjct: 425 LIATDVAARGLDIKNVALVINYDFPNNIEDYVHRIGRTARGDVTEGLSHSFFTSENSACA 484

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
             + K++++    +   L  ++                      K+ G++ R  NYS 
Sbjct: 485 KELVKILKEANQDVPSKLIDMS--------------------TTKNGGYNSRGGNYSR 522


>gi|34495357|gb|AAQ73499.1| zinc responsive protein ZD10B [Rattus norvegicus]
          Length = 482

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 177/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL M
Sbjct: 96  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 155

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      R P+ L L PT ELA Q     E+ GK +               + +K+
Sbjct: 156 LSRVEPAD---RHPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKV 212

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 213 GEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 272

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V    +  K        L
Sbjct: 273 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREEK--FQALCNL 330

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 331 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 390

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 391 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 450

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 451 SMNILNRIQEHFNKKIERLDTD 472


>gi|1905998|gb|AAB50231.1| nuclear RNA helicase [Homo sapiens]
          Length = 427

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 165/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G   P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGLEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V +             ++  + F KY  +  ++V      I  + +  K    
Sbjct: 106 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVMKKNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    NR   L N    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 166 HVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ +++ V   F+Q+P  + V+  +         +        K   L        
Sbjct: 226 FSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARGGRFGTKGLAITFVSDENDAKILNHVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRCEVNVAELPEEID 418


>gi|229916313|ref|YP_002884959.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
 gi|229467742|gb|ACQ69514.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
          Length = 447

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 199/378 (52%), Gaps = 11/378 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L P +V A+ +    KPT IQ + IP  L   D+ G +QTGTGKT +F+LP++ 
Sbjct: 3   SFQQFKLLPFMVDALTEKRITKPTDIQARIIPAALNGRDIIGKSQTGTGKTLAFLLPIVE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEK--YGKNYNLTVALLIGGIPFEAQNKKL 119
            +    A V+     ++ PTRELA Q+ +  +         +  +L++GG   E Q  K+
Sbjct: 63  AINPEDASVQAI---VVAPTRELAWQIHEELKSILIKNPDYIKSSLIVGGTDRERQIDKM 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    ++I TPGRILD      L  + +   V+DEAD+MLDMGF+P +  I   +P   Q
Sbjct: 120 KNPPQLIIGTPGRILDLMKAQALFPHKVTHFVVDEADQMLDMGFLPEVDRIAQALPEKLQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++FSAT+ + L+   + +L +P+  E +     A  I+H  +    +  K+  +     
Sbjct: 180 TMVFSATIPENLEPFLKKYLHDPRFAEASPEHRVAPKIKHHVIPVRHRDRKELTVEIAKA 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       ++F N K+    L  S  + G +V  +HG++  R R + + +  +   Q +
Sbjct: 240 INPFVC---LVFTNTKQEADELETSFREAGLNVGTLHGDMQARRRKQAIKDINDAKYQYV 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+DLAARG+DI  V HV N  +P   + Y HR+GRTGRAG  G+A+TL    +   I+ 
Sbjct: 297 IATDLAARGIDISGVSHVINHGIPKDLDFYTHRVGRTGRAGASGEAYTLYEDHENGPINR 356

Query: 360 IEKLIEKKVDWLNGDLSS 377
           +E   E+  ++ + DL +
Sbjct: 357 LE---ERGFEFTHVDLRN 371


>gi|254525036|ref|ZP_05137091.1| putative ATP-dependent RNA helicase [Stenotrophomonas sp. SKA14]
 gi|219722627|gb|EED41152.1| putative ATP-dependent RNA helicase [Stenotrophomonas sp. SKA14]
          Length = 565

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 126/391 (32%), Positives = 209/391 (53%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+   L P +   +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++
Sbjct: 1   MTFSSFELHPALQAGLEGAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVV 60

Query: 61  T----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                       +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q 
Sbjct: 61  NRLLTRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGSDLGLRFALVYGGVDYDKQR 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIE-ILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L++G DV+I TPGR++D+  + K++  +   I V+DEADRM D+GFI  I+ +   +P
Sbjct: 121 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 180

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                     + T   + +   +    +  ++   + T           +    +K   L
Sbjct: 181 ERTIRQTLLFSATLSHRVLELAYEHMNEPQKLVVEAETITAARVRQRIYFPADDEKI-PL 239

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L S+      ++F N K  V  +  SLEK G+ V  + G++ Q+ R  +L+ F++G 
Sbjct: 240 LLGLLSRSEGARTMVFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLLNRFQKGQ 299

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  + +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 300 LEILVATDVAARGLHIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 359

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEK 384
            +  IE  IE+K+  + +  +L +  P  E+
Sbjct: 360 GLPDIEAYIEQKIPSEPVTKELLTPLPRPER 390


>gi|223590058|sp|A5DDF4|PRP5_PICGU RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|190345338|gb|EDK37207.2| hypothetical protein PGUG_01305 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 862

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 119/398 (29%), Positives = 191/398 (47%), Gaps = 15/398 (3%)

Query: 2   DFADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            +A LGL   ++  + +  GY  P+PIQ + +P ++   D+ G+A TG+GKT +FV+P++
Sbjct: 267 KWAQLGLPSSIMTVLEEKLGYDTPSPIQSQALPAIMSGRDIIGVANTGSGKTLAFVIPLI 326

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +           P  +IL PTRELA Q+      + +   L+V    GG P E+Q   
Sbjct: 327 RHIMDQPPLKSGDGPIGVILTPTRELALQIQKELVNFTQAVELSVCCCYGGSPIESQIAD 386

Query: 119 LERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           L+RG ++++ TPGR++D           +     LV+DEADRM DMGF P +  + S + 
Sbjct: 387 LKRGTEIIVGTPGRVIDLLAANGGRVTNLRRTTFLVLDEADRMFDMGFEPQVNKVLSQIR 446

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q +LFSAT   +L+ ++ +FL +P  I     S  A  I    V            L
Sbjct: 447 PDKQMVLFSATFPKKLESLARSFLVDPIEIVAGGISVVAPEITQRVVLIDDSGDISQKKL 506

Query: 236 Q-------QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           Q       +        K  I    Q+     +   L  Q   +    G      +  I 
Sbjct: 507 QALLKIVDEFSVEDPEGKILIFVDKQEAADDLMVRLLNNQISCIVIHGGKDQVDRKHAIK 566

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
               +  +++++A+ +AARGLD+  +  V N+D P+  E+Y+HR+GRTGRAG  G A TL
Sbjct: 567 QFSDKNGLRVLIATSIAARGLDVRGLNLVINYDAPSHMEDYVHRVGRTGRAGATGTAVTL 626

Query: 349 VAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPPLEK 384
           V     + I  + + ++   KVD +  +L S+     K
Sbjct: 627 VLSSQEREIRDLVRAMKMSGKVDDIPAELQSIADKFLK 664


>gi|156057349|ref|XP_001594598.1| hypothetical protein SS1G_04405 [Sclerotinia sclerotiorum 1980]
 gi|160419160|sp|A7EGG4|PRP28_SCLS1 RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|154702191|gb|EDO01930.1| hypothetical protein SS1G_04405 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 816

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 125/423 (29%), Positives = 213/423 (50%), Gaps = 37/423 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +++  L  +++  +   GY +P+ +Q   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 380 SWSESKLPKRLLDVINQVGYDEPSAVQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLV 439

Query: 62  ILE-----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +          +   P  +IL PTRELA Q+    +K+      T   ++GG   E Q+
Sbjct: 440 YISELPPLNEFTKNDGPYAIILAPTRELAQQIEVEAKKFATPLGFTCVSIVGGHSLEEQS 499

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY---------- 166
             L  GA+++I TPGR++D   R  L++     +++DEADRM+D+GF             
Sbjct: 500 YNLRNGAEIIIATPGRLVDCIERRVLVLGQCCYIIMDEADRMIDLGFEESVNKILDALPV 559

Query: 167 ---------------IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
                          +          RQT++++ATM   ++K+++ +L+ P  + +    
Sbjct: 560 SNEKPDTDDAEDAQAMSRHLGGKDRYRQTMMYTATMPPAVEKIAKKYLRRPAIVTIGNIG 619

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
              ET+E       A   K+   L ++L S +     I+F N K+N   +   ++  GF+
Sbjct: 620 EAVETVEQRV-EFVAGEDKRKKRLNEILASGEFQPPIIVFVNIKRNCDAVARDIKHMGFT 678

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
              +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y H
Sbjct: 679 SVTLHGSKTQEQREAALASVRSGATNVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTH 738

Query: 332 RIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
           RIGRTGRAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ  
Sbjct: 739 RIGRTGRAGKSGVAITFLGNEDADTMYDLKQML------MKSSISRVPEELRKHEAAQQK 792

Query: 392 HAR 394
             R
Sbjct: 793 SQR 795


>gi|19115173|ref|NP_594261.1| ATP-dependent RNA helicase Uap56 [Schizosaccharomyces pombe 972h-]
 gi|59800426|sp|O13792|SUB2_SCHPO RecName: Full=ATP-dependent RNA helicase uap56
 gi|2408027|emb|CAB16225.1| ATP-dependent RNA helicase Uap56 [Schizosaccharomyces pombe]
          Length = 434

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 90/377 (23%), Positives = 158/377 (41%), Gaps = 5/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D+G+  P+ +Q   IP  +   DV   A++G GKTA FVL  L  
Sbjct: 53  FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
           +E     V +                   F KY       +    +      EA   K +
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSK 172

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+            +   + +    ++ +    +  +     IQ +    P  +Q 
Sbjct: 173 SPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQV 232

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT+++E++ + + F+QNP  I V+  +               + +K   +      
Sbjct: 233 MMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKINDL--L 290

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF         L   L +  F    IHG + Q  R+K    FK+   ++ V
Sbjct: 291 DSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICV 350

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL-VAKEDIKHIDA 359
           A+D+  RG+DI  V  V N+D+P+  ++Y+HR+GR GR G  G A T   ++ED + +D 
Sbjct: 351 ATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDK 410

Query: 360 IEKLIEKKVDWLNGDLS 376
           I++  E  +  L  ++ 
Sbjct: 411 IQERFEVNITELPDEID 427


>gi|224056049|ref|XP_002193612.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Taeniopygia
           guttata]
          Length = 858

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 118/392 (30%), Positives = 202/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L   +S   +  + D G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 366 SFASLAGCVSENTLKGINDMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAFLIPA 425

Query: 60  LTILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K +   R     +IL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 426 VELIYKLKFMPRNGTGVIILSPTRELAMQTYGVLKELMNHHVHTYGLIMGGSNRSAEAQK 485

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+L++GF   ++ I  L+P  
Sbjct: 486 LGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEEEMKQIIKLLPKR 545

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ +++  L+          +    T++          S+K  LL  
Sbjct: 546 RQTMLFSATQTRKVEDLAKISLKKEPLYVGVDDNKETATVDGLEQGYVVCPSEKRFLLLF 605

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 606 TFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQTKRTTTFFQFCNAESG 665

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
           +++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 666 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGINGR-GHALLILRPEELG 724

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  ++   + ++    +S +   LEK+
Sbjct: 725 FLRYLKQARVPLSEFEFSWSKISDIQSQLEKL 756



 Score = 78.7 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 3/106 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L   +S   +  + D G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 130 SFASLAGCVSENTLKGINDMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAFLIPA 189

Query: 60  LTILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVA 104
           + ++ K +   R     +IL PTRELA Q     ++   ++  T  
Sbjct: 190 VELIYKLKFMPRNGTGVIILSPTRELAMQTYGVLKELMNHHVHTYG 235


>gi|221504668|gb|EEE30341.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 522

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 124/400 (31%), Positives = 197/400 (49%), Gaps = 25/400 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A+  L  +++ AV  A Y +PTPIQ++ IP+ L++ D+ GIA+TG+GKTA+FVLPMLT
Sbjct: 102 TWAESALPWELIEAVKHANYDRPTPIQMQAIPIALEQRDLIGIAETGSGKTAAFVLPMLT 161

Query: 62  ILE-----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            ++             P  LIL P+RELA Q+ +  +K+          ++GG   E Q 
Sbjct: 162 YVKGLPPLNEDTGQDGPYALILAPSRELALQIDEETQKFASFCKCQTVAVVGGRSAETQA 221

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT----- 171
            +L RGA+++I TPGR+ D   +   ++N    +V+DEADRM+DMGF   +  I      
Sbjct: 222 FQLRRGAEIVIGTPGRVKDCLEKAYTVLNQCNYVVLDEADRMIDMGFEEIVNFILDQIPT 281

Query: 172 ---------------SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
                                 +    +   +  +    E   +   R            
Sbjct: 282 SNLKSNDEALILQQEMQAKAGHRLYRLTQMFSATMPPAVERLARKYLRQPSYISIGDPGA 341

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
            +           +     +     ++     ++F NQKK+   L   L K G+S C++H
Sbjct: 342 GKRAIEQRVEFVPEARKKQRLQDVLENATPPVMVFVNQKKSADALAKVLGKLGYSACSLH 401

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G   Q +R   LS+FKEG+  ++VA+D+A RG+D+  V  V NFD+P   E Y HRIGRT
Sbjct: 402 GGKAQENREAALSSFKEGSHDVLVATDVAGRGIDVEGVQLVVNFDMPKDIEAYTHRIGRT 461

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
           GRAGR G A + + +ED      +++L+    + +  +L+
Sbjct: 462 GRAGRKGLAISFLTEEDSGIFYDLKQLLVSTNNIVPLELA 501


>gi|221481559|gb|EEE19941.1| DEAD-box helicase family protein [Toxoplasma gondii GT1]
          Length = 1158

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 124/400 (31%), Positives = 197/400 (49%), Gaps = 25/400 (6%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
             +A+  L  +++ AV  A Y +PTPIQ++ IP+ L++ D+ GIA+TG+GKTA+FVLPMLT
Sbjct: 738  TWAESALPWELIEAVKHANYDRPTPIQMQAIPIALEQRDLIGIAETGSGKTAAFVLPMLT 797

Query: 62   ILE-----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             ++             P  LIL P+RELA Q+ +  +K+          ++GG   E Q 
Sbjct: 798  YVKGLPPLNEDTGQDGPYALILAPSRELALQIDEETQKFASFCKCQTVAVVGGRSAETQA 857

Query: 117  KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT----- 171
             +L RGA+++I TPGR+ D   +   ++N    +V+DEADRM+DMGF   +  I      
Sbjct: 858  FQLRRGAEIVIGTPGRVKDCLEKAYTVLNQCNYVVLDEADRMIDMGFEEIVNFILDQIPT 917

Query: 172  ---------------SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
                                  +    +   +  +    E   +   R            
Sbjct: 918  SNLKSNDEALILQQEMQAKAGHRLYRLTQMFSATMPPAVERLARKYLRQPSYISIGDPGA 977

Query: 217  IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
             +           +     +     ++     ++F NQKK+   L   L K G+S C++H
Sbjct: 978  GKRAIEQRVEFVPEARKKQRLQDVLENATPPVMVFVNQKKSADALAKVLGKLGYSACSLH 1037

Query: 277  GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
            G   Q +R   LS+FKEG+  ++VA+D+A RG+D+  V  V NFD+P   E Y HRIGRT
Sbjct: 1038 GGKAQENREAALSSFKEGSHDVLVATDVAGRGIDVEGVQLVVNFDMPKDIEAYTHRIGRT 1097

Query: 337  GRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
            GRAGR G A + + +ED      +++L+    + +  +L+
Sbjct: 1098 GRAGRKGLAISFLTEEDSGIFYDLKQLLVSTNNIVPLELA 1137


>gi|237843843|ref|XP_002371219.1| DEAD-box ATP-dependent RNA helicase, putative [Toxoplasma gondii
            ME49]
 gi|211968883|gb|EEB04079.1| DEAD-box ATP-dependent RNA helicase, putative [Toxoplasma gondii
            ME49]
          Length = 1158

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 124/400 (31%), Positives = 197/400 (49%), Gaps = 25/400 (6%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
             +A+  L  +++ AV  A Y +PTPIQ++ IP+ L++ D+ GIA+TG+GKTA+FVLPMLT
Sbjct: 738  TWAESALPWELIEAVKHANYDRPTPIQMQAIPIALEQRDLIGIAETGSGKTAAFVLPMLT 797

Query: 62   ILE-----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             ++             P  LIL P+RELA Q+ +  +K+          ++GG   E Q 
Sbjct: 798  YVKGLPPLNEDTGQDGPYALILAPSRELALQIDEETQKFASFCKCQTVAVVGGRSAETQA 857

Query: 117  KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT----- 171
             +L RGA+++I TPGR+ D   +   ++N    +V+DEADRM+DMGF   +  I      
Sbjct: 858  FQLRRGAEIVIGTPGRVKDCLEKAYTVLNQCNYVVLDEADRMIDMGFEEIVNFILDQIPT 917

Query: 172  ---------------SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
                                  +    +   +  +    E   +   R            
Sbjct: 918  SNLKSNDEALILQQEMQAKAGHRLYRLTQMFSATMPPAVERLARKYLRQPSYISIGDPGA 977

Query: 217  IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
             +           +     +     ++     ++F NQKK+   L   L K G+S C++H
Sbjct: 978  GKRAIEQRVEFVPEARKKQRLQDVLENATPPVMVFVNQKKSADALAKVLGKLGYSACSLH 1037

Query: 277  GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
            G   Q +R   LS+FKEG+  ++VA+D+A RG+D+  V  V NFD+P   E Y HRIGRT
Sbjct: 1038 GGKAQENREAALSSFKEGSHDVLVATDVAGRGIDVEGVQLVVNFDMPKDIEAYTHRIGRT 1097

Query: 337  GRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
            GRAGR G A + + +ED      +++L+    + +  +L+
Sbjct: 1098 GRAGRKGLAISFLTEEDSGIFYDLKQLLVSTNNIVPLELA 1137


>gi|156089263|ref|XP_001612038.1| DEAD/DEAH box domain containing protein [Babesia bovis]
 gi|154799292|gb|EDO08470.1| DEAD/DEAH box domain containing protein [Babesia bovis]
          Length = 509

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 117/388 (30%), Positives = 196/388 (50%), Gaps = 7/388 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL LS  ++  + +  + + T IQ K IP +LQ  DV G A TG+GKT +F++P+  +
Sbjct: 44  FKDLDLSEPLINGLTELNFERTTEIQAKCIPHLLQGKDVLGKAHTGSGKTLAFLVPLAEV 103

Query: 63  LEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +   R      I+ PTREL+ Q     +   K    T+ L++GG     + ++L R
Sbjct: 104 LFQVKFMPRNGTGGLIISPTRELSEQTFAVAKDVLKYLPQTIGLVMGGTNRRGEAERLSR 163

Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           G ++LI TPGR+LDH    K     N+ +L+IDEADR+L++GF   +  I  L+P  RQT
Sbjct: 164 GINILIATPGRLLDHMQNTKGFLYKNLLVLIIDEADRILEIGFEEEMNQIIKLLPKKRQT 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT T +++ +    + NP  ++    S    T+           ++   +L     
Sbjct: 224 CLFSATHTSKVEDMVRLSMTNPVFVQ--ACSKDVATVATLEQGYVVCEAENRFMLLFSFL 281

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   K  ++F +   +V      L     +V +I+G   Q  R     +F      +++
Sbjct: 282 KRHLDKKIMVFFSSGNSVKFHDALLNYIDIAVKSIYGKKQQNKRSSAYYSFCNAKTGILL 341

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKHIDA 359
            +D+AARG DIP V  +  +D P+   +YIHR+GRT R A   G+A   +  E++  +  
Sbjct: 342 CTDVAARGWDIPKVDWIVQYDPPSDPRDYIHRVGRTARGADGEGRAIMFLMPEELGFLHY 401

Query: 360 IEKLIE--KKVDWLNGDLSSLNPPLEKI 385
           +++L     K ++    ++ +   LEK+
Sbjct: 402 LKELKVPLSKYEFELNKIAKVQVQLEKL 429


>gi|70943453|ref|XP_741771.1| ATP-dependent RNA helicase [Plasmodium chabaudi chabaudi]
 gi|56520361|emb|CAH82196.1| ATP-dependent RNA helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 557

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 124/423 (29%), Positives = 199/423 (47%), Gaps = 47/423 (11%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL     ++  + +  + +PT IQ  T P+ L   D+ G+A+TG+GKT +FVLP L 
Sbjct: 132 QFSDLDFHESILNYLNE-NFKEPTAIQKITWPIALSGKDLIGVAETGSGKTLAFVLPCLM 190

Query: 62  I-----------------------------------------LEKGRARVRMPRTLILEP 80
                                                      +      R    LIL P
Sbjct: 191 HILKHKQAEMEQNGGEHIKNNENKLSESNKNDNNYDPDFENEFQNEDNEDRKTYGLILLP 250

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TREL  QV +  +K+    +L    + GG+P   Q   +++GAD+++ TPGR+LD+   G
Sbjct: 251 TRELCMQVLNEIKKFENELDLKAVAVYGGVPKYFQINNIKKGADIIVATPGRLLDYLENG 310

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200
            + +     +VIDEADR+LDMGF   ++ I + +   +Q L  +AT  ++++K++ +F  
Sbjct: 311 IINLLRCIYVVIDEADRLLDMGFEKQLRKIMTQINKNKQLLFLTATWPEQVRKLAYDFCS 370

Query: 201 NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVN 260
                     S              +        L   L+        +IFC+ K+N  N
Sbjct: 371 FDPVKIQIGKSELTANKNIEQQVIVSSSIDLKKKLLDWLKDNYENNKILIFCDTKRNCDN 430

Query: 261 LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNF 320
           LC  L    ++  +IHG+  QR R +IL+N+K     ++VA+D+A+RGLDI ++  V N+
Sbjct: 431 LCKELRYHQYNSLSIHGDKQQRERDRILNNYKNDRCNILVATDVASRGLDIKNISIVINY 490

Query: 321 DVPNRAENYIHRIGRTGRAGRHGKAFTL-----VAKEDIKHIDAIEKLIEKKVDWLNGDL 375
           D+PN  E+YIHRIGRTGRAG  GK+           +  +    + KL+ K    +  +L
Sbjct: 491 DIPNTIEDYIHRIGRTGRAGNKGKSILFFPYDYYVPQKQRFAKDLVKLLNKTNQQVPNEL 550

Query: 376 SSL 378
             +
Sbjct: 551 REI 553


>gi|312863883|ref|ZP_07724121.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
           vestibularis F0396]
 gi|311101419|gb|EFQ59624.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
           vestibularis F0396]
          Length = 447

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 114/366 (31%), Positives = 180/366 (49%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ +  + +PTP+Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDFNFKAYIQKALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L      V++    I  P+RELA Q+    ++  K+    + ++      + Q +  +
Sbjct: 61  EKLNPESRDVQVV---ITAPSRELATQIYQATKQIAKHSATEIRVVNYVGGTDKQRQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D      L ++     V+DEAD  +DMGF+  +  I + +P  
Sbjct: 118 LKVAQPHIVIGTPGRIYDLVKSRDLAIHKAHTFVVDEADMTMDMGFLDTVDKIAASLPKE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEQIKTSTVIADTI---DNWLVSTKGRNKNEQIL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K+   +L   L   G  V  IHG I  R R +I++  K+   +
Sbjct: 235 EMLKGMQPYLAMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLEFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 RELEKM 360


>gi|300796770|ref|NP_001178477.1| ATP-dependent RNA helicase DDX54 [Rattus norvegicus]
 gi|293341214|ref|XP_002724870.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 54-like isoform 2
           [Rattus norvegicus]
          Length = 874

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 131/366 (35%), Positives = 196/366 (53%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 97  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 156

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 157 LKARSAQTGA-RALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHEN 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I   +P   QT+L
Sbjct: 216 PDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVL 275

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  S   E ++  F     + +K   LL  L    
Sbjct: 276 FSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSF-FLVREDTKTAVLLYLLQNVV 334

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K +   L   L  QG S   I+  +DQ +R   L+ F       ++ +
Sbjct: 335 RPQDQNVVFVATKHHAEYLTELLTGQGVSCAHIYSALDQTARKINLAKFTHNKCSTLIVT 394

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA +++ ++  +  
Sbjct: 395 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHL 454

Query: 363 LIEKKV 368
            + + V
Sbjct: 455 FLGRSV 460


>gi|293341212|ref|XP_001079855.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 54-like isoform 1
           [Rattus norvegicus]
 gi|293352594|ref|XP_573400.3| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2
           [Rattus norvegicus]
          Length = 874

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 131/366 (35%), Positives = 196/366 (53%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 97  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 156

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 157 LKARSAQTGA-RALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHEN 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I   +P   QT+L
Sbjct: 216 PDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVL 275

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  S   E ++  F     + +K   LL  L    
Sbjct: 276 FSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSF-FLVREDTKTAVLLYLLQNVV 334

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K +   L   L  QG S   I+  +DQ +R   L+ F       ++ +
Sbjct: 335 RPQDQNVVFVATKHHAEYLTELLTGQGVSCAHIYSALDQTARKINLAKFTHNKCSTLIVT 394

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA +++ ++  +  
Sbjct: 395 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHL 454

Query: 363 LIEKKV 368
            + + V
Sbjct: 455 FLGRSV 460


>gi|256272311|gb|EEU07295.1| Drs1p [Saccharomyces cerevisiae JAY291]
          Length = 751

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 146/481 (30%), Positives = 238/481 (49%), Gaps = 20/481 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L LS  V+  +   GYVKP+PIQ  TIP+ L   D+   A TG+GKTA+F++P++ 
Sbjct: 231 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 290

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            L    A++   R ++L PTRELA QVAD  ++  +    +T  L +GG+    Q + L+
Sbjct: 291 RLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLK 350

Query: 121 RGADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D++I TPGR +DH        ++++EILV+DEADRML+ GF   +  I  L+P  RQ
Sbjct: 351 SRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQ 410

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSS--TAETIEHCFVATYAQYSKKCALLQQ 237
            LLFSATM  +++ +    L+ P RI ++ P    T  T E   +               
Sbjct: 411 NLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLI 470

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                   K  ++F  +K+    L   +   G SV  +HG++ Q  R+  ++ FK   + 
Sbjct: 471 RKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVP 530

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIK 355
           +++ +DLA+RGLDIP +  V N+D+P   E Y+HR+GRT RAGR G++ T V  + +D  
Sbjct: 531 VLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 590

Query: 356 HIDA----IE--------KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
            + A    +E        K + + VDW+   +   N  +E +D    +   +     +  
Sbjct: 591 IVRAAIKSVEENKSLTQGKALGRNVDWVQ--IEETNKLVESMDDTIEDILVEEKEEKEIL 648

Query: 404 TGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
               + +K  +  K    ++   + +  Q +  + ++  LG           K R +   
Sbjct: 649 RAEMQLRKGENMLKHKKEIQARPRRTWFQSESDKKNSKVLGALSRNKKVTNSKKRKREEA 708

Query: 464 K 464
           K
Sbjct: 709 K 709


>gi|145230033|ref|XP_001389325.1| ATP-dependent RNA helicase has1 [Aspergillus niger CBS 513.88]
 gi|143019625|sp|A2Q9T6|HAS1_ASPNC RecName: Full=ATP-dependent RNA helicase has1
 gi|134055440|emb|CAK43955.1| unnamed protein product [Aspergillus niger]
          Length = 606

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 117/393 (29%), Positives = 192/393 (48%), Gaps = 12/393 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS K +  + D G+   T IQ +TIP +L   DV G A+TG+GKT SF++P + 
Sbjct: 126 KFTELNLSEKTMKGIQDMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVE 185

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + R    + ++ PTRELA Q+     +   +++ T  ++IGG    A+ +KL 
Sbjct: 186 MLSALRFKPRNGTGVLVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAEKLT 245

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-VPFTR 178
           +G ++LI TPGR +    N    +  N++ LVIDEADR+L++GF   ++ I  +     R
Sbjct: 246 KGVNLLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIVKILPSEER 305

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT T +++ ++   L+               T+E          + K  LL   
Sbjct: 306 QTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFLLLFS 365

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +    V      L      V  +HG   Q+ R      F       
Sbjct: 366 FLKRNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAKQGT 425

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  FD P+   +Y+HR+GRT R     G++   +   ++  +
Sbjct: 426 LICTDVAARGLDIPAVDWIIQFDPPDDTRDYVHRVGRTARGVNGKGRSLMFLQPSEVGFL 485

Query: 358 DAIEKLIEKKVDWLNGDLS-----SLNPPLEKI 385
             ++   E +V  +  D       ++   LEK+
Sbjct: 486 KHLK---EARVPVVEFDFPANKIVNVQSQLEKL 515


>gi|21243124|ref|NP_642706.1| ATP-dependent RNA helicase DbpA [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|21108643|gb|AAM37242.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 458

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 129/381 (33%), Positives = 188/381 (49%), Gaps = 6/381 (1%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F+ L LSP +   +   GY   TPIQ  ++P +LQ  DV   A TG+GKTA+F L +
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAHSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  L+    R +                        G      V L  G           
Sbjct: 61  LQKLDPALTRAQALVLC-PTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I S     RQ
Sbjct: 120 AHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT  D ++ ++   L+ P  I V    S  E  +  F        K  A L    
Sbjct: 180 SLLFSATFPDSIRTLARELLKEPVEITVEGADSAPEIDQQFFEVDPTYRQKAVAGLLL-- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ ++FCN +K V  +  SL++ GFS  A+HG+++QR R ++L  F   +  ++
Sbjct: 238 --RFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+HG A +LVA  +     A
Sbjct: 296 VASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARAQA 355

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           +E    + + W    L++  P
Sbjct: 356 LETEQGQPLKWSRAPLATARP 376


>gi|294882024|ref|XP_002769569.1| helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239873121|gb|EER02287.1| helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 439

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 101/377 (26%), Positives = 173/377 (45%), Gaps = 5/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL +L  
Sbjct: 52  FRDFLLKPELLRAIVDCGFEHPSEVQHEAIPQAILGTDILCQAKSGMGKTAVFVLAILQQ 111

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN-KKLER 121
           L        +   ++            +         N+   ++ GG+P         + 
Sbjct: 112 LNVDEKDSDVKVLIMCHTRELAYQIKNEFDRFSKYFPNVKNGVVYGGVPISEDKEMLSKS 171

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFIPYIQNITSLVPFTRQT 180
              +LI TPGR+L       L ++++E  V+DE D+    +     IQ++    P  +Q 
Sbjct: 172 HPQILIGTPGRVLALVRGKHLDLSHVEHFVLDECDKCLDKLDMRKDIQSVFIETPVKKQV 231

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSATM+ E+++V + F+  P  I V+  +         +    A+  K        L 
Sbjct: 232 MMFSATMSKEMREVCKRFMNEPHEIFVDDDTKLTLHGLQQYFVRLAENEK--NKKLTDLL 289

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF    +  + L   L +  F   AIH  + Q  R+     FK+   ++MV
Sbjct: 290 DALEFNQVVIFVKSVQRAIALADLLTECNFPAIAIHSRLKQSDRIDRYKQFKDFKKRIMV 349

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           A+DL  RG+DI  V  V N+D+P+ ++ Y+HR+GR GR G  G A T V ++ED   ++ 
Sbjct: 350 ATDLFGRGIDIERVNIVINYDIPDSSDQYLHRVGRAGRFGTKGLAITFVSSEEDTDMLNQ 409

Query: 360 IEKLIEKKVDWLNGDLS 376
           ++   E  V  L   + 
Sbjct: 410 VQARFEVTVGELPAQID 426


>gi|26327531|dbj|BAC27509.1| unnamed protein product [Mus musculus]
          Length = 909

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 131/366 (35%), Positives = 196/366 (53%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 97  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 156

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 157 LKARSAQTGA-RALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHEN 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I   +P   QT+L
Sbjct: 216 PDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVL 275

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  S   E ++  F     + +K   LL  L    
Sbjct: 276 FSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSF-LLVREDTKAAVLLYLLQNVV 334

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K +   L   L  QG S   I+  +DQ +R   L+ F       ++ +
Sbjct: 335 RPQDQTVVFVATKHHAEYLTELLMGQGVSCAHIYSALDQTARKINLAKFTHNKCSTLIVT 394

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA +++ ++  +  
Sbjct: 395 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHL 454

Query: 363 LIEKKV 368
            + + V
Sbjct: 455 FLGRSV 460


>gi|28076989|ref|NP_082317.1| ATP-dependent RNA helicase DDX54 [Mus musculus]
 gi|46576606|sp|Q8K4L0|DDX54_MOUSE RecName: Full=ATP-dependent RNA helicase DDX54; AltName: Full=DEAD
           box protein 54
 gi|21325958|gb|AAM47540.1|AF319547_1 ATP-dependent RNA-helicase [Mus musculus]
 gi|55249609|gb|AAH43699.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Mus musculus]
          Length = 874

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 131/366 (35%), Positives = 196/366 (53%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 97  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 156

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 157 LKARSAQTGA-RALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHEN 215

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I   +P   QT+L
Sbjct: 216 PDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVL 275

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  S   E ++  F     + +K   LL  L    
Sbjct: 276 FSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSF-LLVREDTKAAVLLYLLQNVV 334

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K +   L   L  QG S   I+  +DQ +R   L+ F       ++ +
Sbjct: 335 RPQDQTVVFVATKHHAEYLTELLMGQGVSCAHIYSALDQTARKINLAKFTHNKCSTLIVT 394

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA +++ ++  +  
Sbjct: 395 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHL 454

Query: 363 LIEKKV 368
            + + V
Sbjct: 455 FLGRSV 460


>gi|28897062|ref|NP_796667.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837936|ref|ZP_01990603.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ3810]
 gi|260363937|ref|ZP_05776676.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus K5030]
 gi|260877980|ref|ZP_05890335.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AN-5034]
 gi|260896348|ref|ZP_05904844.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus
           Peru-466]
 gi|260900676|ref|ZP_05909071.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ4037]
 gi|28805270|dbj|BAC58551.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748714|gb|EDM59565.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ3810]
 gi|308085198|gb|EFO34893.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus
           Peru-466]
 gi|308090073|gb|EFO39768.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AN-5034]
 gi|308110247|gb|EFO47787.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ4037]
 gi|308112560|gb|EFO50100.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus K5030]
 gi|328471865|gb|EGF42742.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus 10329]
          Length = 459

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 143/403 (35%), Positives = 228/403 (56%), Gaps = 12/403 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL+P ++  +    Y   TPIQ  ++P +L + DV G  +TG+GKTA+F L +L+
Sbjct: 5   TFDQVGLNPALLETLDSLNYTHMTPIQALSLPAILNQRDVIGQGKTGSGKTAAFGLGVLS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+    L+L PTRELA QVA      G+  +    L +  G+P   Q   LE
Sbjct: 65  NLNVKRFRVQ---ALVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH  +G++ +  +  LV+DEADRML+MGF   +  I +  P  RQT
Sbjct: 122 HGAHILVGTPGRILDHLEKGRINLEELNTLVLDEADRMLEMGFQDALDAIINAAPKQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  ++++K+++  +++P+ I+V +   T+   ++ +     +   +         
Sbjct: 182 LLFSATFPEKIEKIAQRIMKSPEMIKVESTHDTSSIAQYFYKVEGTEARDEALANLL--- 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++FCN KK V N+   L  +GFSV  IHG+++QR R + L  F   ++ ++V
Sbjct: 239 LTYQPESAVVFCNTKKEVQNVADELHHRGFSVIDIHGDLEQRERDQALVQFANKSVSILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+   ++D   +  I
Sbjct: 299 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARI 358

Query: 361 EKLIEKKVDWLNGDL---SSLNPPLEKIDIAQHNHARKNNPIP 400
           E+ +E  +D +   L   S+  P   K+     +  +K    P
Sbjct: 359 EEYLE--MDVVPATLPAKSNQQPYQAKMVTINIDGGKKQKVRP 399


>gi|149612016|ref|XP_001507052.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 25,
           partial [Ornithorhynchus anatinus]
          Length = 439

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 98/393 (24%), Positives = 177/393 (45%), Gaps = 16/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ--RHDVCGIAQTGTGKTASFVLPM 59
            F +L L  +++  +   GY +P+ IQ   +P++L   R ++   +Q+GTGKTA+FVL M
Sbjct: 54  TFEELQLKQELLRGIYAMGYNRPSKIQEMALPMMLACPRQNLIAQSQSGTGKTAAFVLAM 113

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +       + P+ L L PT ELA Q     E+ G+       +        ++   +
Sbjct: 114 LSSVSA---DKKFPQCLCLSPTYELAMQTGQVVERMGQFCVNVNVMYAVRGNRVSRALGI 170

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   +             +   L      ++ +    +   GF      I   +    Q
Sbjct: 171 TQQIVIGTPGTLLDWCFKWKLIDLTKICVFVLDEADVMIDTQGFSDQSIRIQRALQPGCQ 230

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + + +E  +  P  I++ T   T + I   +V    +  K  AL    +
Sbjct: 231 MLLFSATFEDFVWQFAERIIPEPNVIKLRTEELTLDNIRQFYVLCRHRSDKYRALC--NI 288

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   IIFC  ++    L   + + G  V  + G +    R  I+  F++G  +++
Sbjct: 289 YGSITIGQAIIFCQTRQIAKWLTVEMMEDGHQVSLLSGELTVEQRAAIIQRFRDGKEKVL 348

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           + +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G AF ++  + 
Sbjct: 349 ITTNVCARGIDVKQVTIVVNFDLPLNQDYEPNYETYLHRIGRTGRFGKKGLAFNMIEVDK 408

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
           +  +  I++  + ++  L+ +       +EKI+
Sbjct: 409 LPLLMKIQEHFKSQIKELDPEDMD---EIEKIE 438


>gi|319408783|emb|CBI82440.1| ATP-dependent RNA helicase [Bartonella schoenbuchensis R1]
          Length = 454

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 155/449 (34%), Positives = 245/449 (54%), Gaps = 18/449 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LG+   +   +  AG  KP PIQ + IP++L++ D+ GIAQTG+GKT +F LP+L+ 
Sbjct: 8   FIKLGIPTLLTENLFIAGINKPKPIQKQAIPVMLKKRDILGIAQTGSGKTLAFGLPVLSQ 67

Query: 63  LEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +     +         IL PTRELA Q+ ++     K  +L+  L++GG+   AQ K+++
Sbjct: 68  ILALGDKRYPKTARALILVPTRELAVQIEESIRMVAKGSHLSTCLILGGVSRFAQIKRMK 127

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DVLI TPGR++D  +   + ++    LV+DEADRMLDMGFI  +Q I  L+   RQT
Sbjct: 128 TGVDVLIATPGRLMDLVSEKCIDLSQSRFLVLDEADRMLDMGFIRDVQRIAKLLHEKRQT 187

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM  E+  +++N L  P +IE+    + A  I            K          
Sbjct: 188 ALFSATMPREIVTLAKNLLNEPVKIEIVPQGTVATKITQKLYCVPTSEKKSV---LNKFL 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +   + + IIF   K     +  SL K G+SV AIHGN    +R + L  F+EG++ ++V
Sbjct: 245 TDPALASVIIFTRTKHGADAVARSLTKAGYSVAAIHGNKSHAARQRALKAFREGSVGILV 304

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+AARG+D+P V HV N+D+P+ AENY+HRIGRTGR    G A TL  ++ +   + A
Sbjct: 305 ATDIAARGIDVPGVSHVINYDLPDEAENYVHRIGRTGRNDTSGNAITLFDEKVEQVRLRA 364

Query: 360 IEKLIEKKV--DWLNGDLSSLN-----PPLEKIDIAQHNHARKNN----PIPQKSTGFDR 408
           +E++I  K+  + +   +++L      P  +K    + +  +K         ++S   + 
Sbjct: 365 VERVIRMKLTREDIPPQIAALPEKSLIPENDKKHCFKKSQCQKQAFDHIDQIKQSHVKNS 424

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQE 437
             KN   +K+    K + K  + ++ I++
Sbjct: 425 SSKNKRCKKAKTTTKRA-KSFRFRKSIKQ 452


>gi|296235289|ref|XP_002762845.1| PREDICTED: ATP-dependent RNA helicase DDX3X isoform 1 [Callithrix
           jacchus]
 gi|297709768|ref|XP_002831596.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 1 [Pongo
           abelii]
          Length = 660

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 137/427 (32%), Positives = 214/427 (50%), Gaps = 28/427 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 241 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 300

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 301 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 360

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 361 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 420

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 421 WVEESDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           G A +   + +I     +       +D L      +   LE +    H          + 
Sbjct: 539 GLATSFFNERNINITKDL-------LDLLVEAKQEVPSWLENMAYEHHYKGSSRGRSKRF 591

Query: 403 STGFDRR 409
           S GF  R
Sbjct: 592 SGGFGAR 598


>gi|317047409|ref|YP_004115057.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp.
           At-9b]
 gi|316949026|gb|ADU68501.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
          Length = 451

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 168/446 (37%), Positives = 258/446 (57%), Gaps = 10/446 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL+  ++ AV + GY +PTPIQ + IP+VL   D+   AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVAEQGYREPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLL 60

Query: 61  TI---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +      R  R LIL PTRELAAQV +N  +Y +  NL   ++ GG+    Q  
Sbjct: 61  QRLSAKDAPARGRRPVRALILTPTRELAAQVGENVREYSQYLNLRSLVVFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL  G DVL+ TPGR+LD  ++  + ++++EILV+DEADRMLDMGFI  I+ + + +P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLAHQNAVDLSHVEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT +DE++ ++E  L NP+++EV   ++ +E +       +    K+   L  
Sbjct: 181 RQNLLFSATFSDEIKSLAEKLLNNPEQVEVARRNTASEQV---SQQVHFVDKKRKRELLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+  +D  +  ++F   K    +L   L K G +  AIHGN  Q +R + L++FK G I+
Sbjct: 238 LMIGRDNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKSGGIR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI ++ HV N+++PN AE+Y+HRIGRTGRA   G A +LV  ++ K +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGAALSLVCVDEHKLL 357

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
             IE+L+++++    L G     +   E I   +    ++       + G + R +  S 
Sbjct: 358 RDIERLLKREIPRIALPGFDPDPSIKAEPIQNGRQQQQQRGGRGRGPAAGGNPRPQ--SE 415

Query: 416 QKSHIPLKESEKISKLQQDIQENDAD 441
            ++  P  E+    +  QD +   + 
Sbjct: 416 GRAPRPQGENRAPRRQGQDGKPARSR 441


>gi|227829832|ref|YP_002831611.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.S.2.15]
 gi|227456279|gb|ACP34966.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.S.2.15]
          Length = 360

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 123/362 (33%), Positives = 196/362 (54%), Gaps = 22/362 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    LS  +  A+ +AGY+KPT +Q   IP ++    V   A+TG+GKTA++V+P+L  
Sbjct: 19  FE--NLSEDLRKALNEAGYIKPTRVQEVVIPELMNGKSVIVQAKTGSGKTAAYVIPILER 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                         IL PTRELA Q+ D  +K GK   + V+L+IGG+ ++ Q +     
Sbjct: 77  NSTAL---------ILSPTRELATQILDEIKKLGKYKQIDVSLIIGGMSYDDQRQSK--- 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LD +++GK+  +  + +++DEADRMLDMGFI  I+ I +          
Sbjct: 125 --IVVGTPGRLLDLWSKGKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCNAKIA-GF 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ DE+  +++ F ++ + I ++      E  +           K   LL++     
Sbjct: 182 FSATIPDEIMTLAKEFSKDLREIVLDEYKPVEEVKQKFVKVRNDWNDKVSKLLEE----- 236

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  ++F   +     L + L+ +G +V  + G++ Q  R+K    FK+G   ++VA+
Sbjct: 237 INGEKILVFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVAT 296

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLA+RG+DI DV  V NFD+P   E YIHR+GRTGR GR G+A T     +   I  I  
Sbjct: 297 DLASRGIDIIDVNKVINFDIPRDVETYIHRVGRTGRMGRVGQAITFYTFREADMIKRINN 356

Query: 363 LI 364
           L+
Sbjct: 357 LL 358


>gi|170731293|ref|YP_001776726.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa M12]
 gi|167966086|gb|ACA13096.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
          Length = 544

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 129/393 (32%), Positives = 204/393 (51%), Gaps = 7/393 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F+   L P ++  +  AG+   TPIQ  T+P+ L   D+ G AQTGTGKT +F++ ++
Sbjct: 10  LNFSSFDLHPALLTGLTRAGFTLCTPIQALTLPVALAGSDIAGQAQTGTGKTLAFLVVVV 69

Query: 61  T----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                           PR LIL PTRELA Q+ ++  K+G N  L  AL+ GG+ ++ Q 
Sbjct: 70  NRLLSRPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQR 129

Query: 117 KKLERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L +GADV+I TPGR I        + +   EI V+DEADRM D+GFI  I+ I   +P
Sbjct: 130 EMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLP 189

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                     + T   + +   +       E     + + T        Y    ++   L
Sbjct: 190 ERCSRQTLLFSATLSHRVLELAYEY-MNEPEKLVAETESVTTTRVRQRIYFPAEEEKIPL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L S+      I+F N K  V  +  +L++ G+ V  + G++ QR R  +L+ F++G 
Sbjct: 249 LLGLLSRSEGMRTIVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQKGQ 308

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 309 LEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERYAM 368

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
            +  IE  IE+K+  +    + L  PL + + A
Sbjct: 369 SLPDIEAYIEQKIP-VAAVTAELLAPLSRPERA 400


>gi|126305160|ref|XP_001375615.1| PREDICTED: similar to histone protein Hist2h3c1 [Monodelphis
           domestica]
          Length = 694

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 106/382 (27%), Positives = 176/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 308 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 367

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      R P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 368 LSQVEPLN---RYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 424

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 425 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPKDCQ 484

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K +   + +P  I++     T +TI+  +V    +  K        L
Sbjct: 485 MLLFSATFEDSVWKFARKVVPDPNIIKLKREEETLDTIKQYYVMCNNRDEK--FQALCNL 542

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 543 YGAITIAQAMIFCHTRKTAGWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 602

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 603 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 662

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK+D L+ D
Sbjct: 663 SMNILNRIQEHFNKKIDRLDTD 684


>gi|15898827|ref|NP_343432.1| ATP-dependent RNA helicase [Sulfolobus solfataricus P2]
 gi|229578785|ref|YP_002837183.1| DEAD/DEAH box helicase [Sulfolobus islandicus Y.G.57.14]
 gi|238619197|ref|YP_002914022.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.4]
 gi|284997087|ref|YP_003418854.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.D.8.5]
 gi|13815318|gb|AAK42222.1| ATP-dependent RNA helicase [Sulfolobus solfataricus P2]
 gi|228009499|gb|ACP45261.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           Y.G.57.14]
 gi|238380266|gb|ACR41354.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.4]
 gi|284444982|gb|ADB86484.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.D.8.5]
          Length = 360

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 123/362 (33%), Positives = 196/362 (54%), Gaps = 22/362 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    LS  +  A+ +AGY+KPT +Q   IP ++    V   A+TG+GKTA++V+P+L  
Sbjct: 19  FE--NLSEDLRKALNEAGYIKPTRVQEVVIPELMNGKSVIVQAKTGSGKTAAYVIPILER 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                         IL PTRELA Q+ D  +K GK   + V+L+IGG+ ++ Q +     
Sbjct: 77  NSTAL---------ILSPTRELATQILDEIKKLGKYKQIDVSLIIGGMSYDDQRQSK--- 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LD +++GK+  +  + +++DEADRMLDMGFI  I+ I +          
Sbjct: 125 --IVVGTPGRLLDLWSKGKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCNAKIA-GF 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ DE+  +++ F ++ + I ++      E  +           K   LL++     
Sbjct: 182 FSATIPDEIMTLAKEFSKDLREIVLDEYKPVEEVKQKFVKVRNDWNDKVSKLLEE----- 236

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  ++F   +     L + L+ +G +V  + G++ Q  R+K    FK+G   ++VA+
Sbjct: 237 INGEKILVFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVAT 296

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLA+RG+DI DV  V NFD+P   E YIHR+GRTGR GR G+A T     +   I  I  
Sbjct: 297 DLASRGIDIIDVNKVINFDIPRDVETYIHRVGRTGRMGRVGQAITFYTFREADMIKRINN 356

Query: 363 LI 364
           L+
Sbjct: 357 LL 358


>gi|71031306|ref|XP_765295.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68352251|gb|EAN33012.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 470

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 126/432 (29%), Positives = 207/432 (47%), Gaps = 16/432 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+  ++  A  + G+ +PT IQI+ IP+ L   D+ G+A+TG+GKTA+F +P+L 
Sbjct: 42  TFEDLGVCVELCRACKELGWKRPTKIQIEAIPIALSGKDIIGLAETGSGKTAAFTIPILQ 101

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+    +LIL PTREL+ Q+ +     G    L V L++GG+   +Q  +L +
Sbjct: 102 KLLEKPQRLF---SLILAPTRELSLQIKEQLISLGSEIGLDVCLILGGLDMVSQALQLSK 158

Query: 122 GADVLICTP-GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ +P        N     +  I+ LV+DEAD++L   F   +  I + +P  + T
Sbjct: 159 KPHIIVGSPGRIADHLQNTKGFSLETIKYLVLDEADKLLSTDFDDSLNKIITSLPKDKVT 218

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            L+SATMT ++ K+ +  L  P +I VNT   T+E +   ++    ++            
Sbjct: 219 YLYSATMTSKITKLQKVTLMKPIQINVNTKYHTSEHLIQKYLLIPLKFKYTYLACILWKY 278

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ----------RSRMKILSN 290
           S  T+      C   + V     +L  +   +      I +          + +     +
Sbjct: 279 STSTIMVFCNTCLTSQKVTLFLQNLSFKSVCLHGKLSQIQRLNSLNSFKTGKLQPIPQPH 338

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
              G   ++V +D+ +RGLDIP V  V NFDVPN +++YIHR+GRT RAG+ G + TL+ 
Sbjct: 339 IISGLFNILVVTDVGSRGLDIPFVDLVINFDVPNTSKDYIHRVGRTARAGKSGISLTLIT 398

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           + DI+     E  + KK++    D+S       K D   ++          K       K
Sbjct: 399 QYDIESFQRTEYALNKKLEEYK-DISE-EEVYNKYDECCNSLRNAEMDYKNKFQLIKTNK 456

Query: 411 KNYSSQKSHIPL 422
           KN    KS   L
Sbjct: 457 KNKQYNKSKFKL 468


>gi|321473575|gb|EFX84542.1| hypothetical protein DAPPUDRAFT_223010 [Daphnia pulex]
          Length = 869

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 110/389 (28%), Positives = 185/389 (47%), Gaps = 4/389 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F D+ LS K +  +    Y  PT +Q ++I L L+  DV G A+TG+GKT +FV+P +
Sbjct: 67  LKFKDIPLSKKTLQGLQQNEYTTPTEVQKESIVLALRGLDVLGAAKTGSGKTLAFVIPVL 126

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +      R+     LI+ PTRELA Q+ + F K G  ++ +  L+IGG     + K+L
Sbjct: 127 ERLYCMQWTRLDGLGALIITPTRELAYQIFETFRKVGIQHDFSAGLIIGGKDLNFERKRL 186

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   ++      +           +N++ILVIDEADR LD+GF   +  I   +P  RQ
Sbjct: 187 DQCNIMICTPGRVLHHMDENPLFDCSNLQILVIDEADRCLDLGFQQTMNGIIENLPPKRQ 246

Query: 180 TLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           TLLFSAT T  ++     +               +               +K   L   L
Sbjct: 247 TLLFSATQTKSVKDLARLSLKDPVYVSVHENAQYSTPESLRQSYIITPIQNKVDILWSFL 306

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +       +   ++   ++   +  + G SV A++G + Q  RM +   F E    +
Sbjct: 307 RSHRKKKLIVFLTSCKQVRFIHQAFTRLRPGLSVLALYGTMHQMKRMSVYEEFCEKQTAV 366

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+AARGLD P+V  V   D P+   +YIHR GRT R  + G++  ++   +   ++
Sbjct: 367 LFATDIAARGLDFPNVDWVIQMDCPDDPSSYIHRAGRTARYQKGGESLLMLLPSEEAMVE 426

Query: 359 AI--EKLIEKKVDWLNGDLSSLNPPLEKI 385
            +  +K+  +K++     L S+   LE +
Sbjct: 427 QLAQKKIPIQKIEVNPSKLVSIQRKLEAM 455


>gi|296422662|ref|XP_002840878.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637104|emb|CAZ85069.1| unnamed protein product [Tuber melanosporum]
          Length = 838

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 123/366 (33%), Positives = 194/366 (53%), Gaps = 33/366 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPLVL   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 91  FQSMGLNMTLLKAITRKGFSVPTPIQRKTIPLVLDGVDVVGMARTGSGKTAAFVIPMVER 150

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    RV M R L+L P+RELA Q     +++G+  +L V LL+GG   E Q   +   
Sbjct: 151 LKTHSVRVGM-RALVLSPSRELALQTMKVVKEFGRGTDLKVVLLVGGDSLEEQFGYMAGN 209

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR +      +L + +++ +V DEADR+ +MGF   +  I   +P  RQTLL
Sbjct: 210 PDIVIATPGRFMHLKVEMELDLRSVQYVVFDEADRLFEMGFSAQLTEILHSLPSNRQTLL 269

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ +                                                     
Sbjct: 270 FSATLPN--------------------------------SEKEGALLHLLQDRTHQFHET 297

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            +  + I+F   K +V  L   + + GF V  ++G +DQ +R   ++ F+ G   ++V +
Sbjct: 298 ASTHSTIVFAATKHHVEYLAQLISQAGFQVSYVYGTLDQVARRNQVARFRTGDTSILVVT 357

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP + +V N+D P + + ++HR+GRT RAGR G A++ V  ED  ++  ++ 
Sbjct: 358 DVAARGIDIPLLSNVINYDFPPQPKVFVHRVGRTARAGRRGWAYSFVRAEDAPYLLDLQL 417

Query: 363 LIEKKV 368
            + KK+
Sbjct: 418 FLGKKL 423


>gi|163782068|ref|ZP_02177067.1| ATP-dependent RNA helicase DeaD [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882600|gb|EDP76105.1| ATP-dependent RNA helicase DeaD [Hydrogenivirga sp. 128-5-R1-1]
          Length = 361

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 198/368 (53%), Gaps = 9/368 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F    LS ++  A+ +  + KPTPIQ   IP+ L+  D+   A+TGTGKT +F +P++
Sbjct: 1   MQFNFNQLSNRLQNALEEIEFTKPTPIQESAIPVALEGKDLLIQARTGTGKTGAFGIPII 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK-KL 119
             L++G   +      +L PTRELA Q+ D+     +   ++V    GG           
Sbjct: 61  EKLKRGERAL------VLAPTRELAIQIRDHLRDLARFSKISVFSFYGGTSVGRDLSLLE 114

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R  DV++ TPGRI D   RG L ++  + LV+DE D MLDMGF   I+ I S +P  RQ
Sbjct: 115 RRIPDVVVGTPGRIKDLIERGALKLDTFKYLVLDEVDIMLDMGFREDIEWIVSKLPEERQ 174

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T   SAT+  E+++++  F++                I    V T ++  K      + +
Sbjct: 175 TFFVSATVPREIREIARKFMKPGFEHISVESEELKPRINEIVVRTRSEIHKTE--ELERI 232

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  +  I+F   K+N   L ++L K+G++V A+HG++ Q+ R  ++  F+   ++++
Sbjct: 233 LRENDDEKIIVFVKMKRNAKELAYTLRKKGYNVEALHGDMTQKRRETVMKLFRNNRVKVL 292

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLDI  V  + NF +P     Y HRIGRTGR G  G A +LV+  + +++  
Sbjct: 293 IATDVASRGLDIEGVSMIINFHLPEDPRVYTHRIGRTGRFGSEGTAISLVSPSEKRNLWR 352

Query: 360 IEKLIEKK 367
           IEK  EK 
Sbjct: 353 IEKHREKT 360


>gi|114306812|dbj|BAF31287.1| BAT1 protein [Homo sapiens]
          Length = 443

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 90/390 (23%), Positives = 161/390 (41%), Gaps = 18/390 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 47  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 106

Query: 63  LEKGRARV----------RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-- 110
           LE    +V           +    +L            + E    +  +    +      
Sbjct: 107 LEPVTGQVYLGRVLGRGFWLGLVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGG 166

Query: 111 ---PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
                + +  K      V+      +    N+   L +    ++ +    +  +     +
Sbjct: 167 LSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDV 226

Query: 168 QNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           Q I  + P  +Q ++FSAT++ E++ V   F+Q+P  I V+  +         +      
Sbjct: 227 QEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD 286

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             K   L              +IF    +  + L   L +Q F   AIH  + Q  R+  
Sbjct: 287 NEKNRKLFDL--LDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSR 344

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
              FK+   +++VA++L  RG+DI  V   FN+D+P  ++ Y+HR+ R GR G  G A T
Sbjct: 345 YQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 404

Query: 348 LVAKE-DIKHIDAIEKLIEKKVDWLNGDLS 376
            V+ E D K ++ ++   E  +  L  ++ 
Sbjct: 405 FVSDENDAKILNDVQDRFEVNISELPDEID 434


>gi|119946353|ref|YP_944033.1| ATP-dependent RNA helicase DbpA [Psychromonas ingrahamii 37]
 gi|119864957|gb|ABM04434.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 462

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 135/407 (33%), Positives = 222/407 (54%), Gaps = 10/407 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L   ++  +   GY   TPIQ +++P VL   DV    +TG+GKTA+F L +L  
Sbjct: 6   FSTLPLHTDLLHNLESLGYHVMTPIQAQSLPHVLAGKDVIAQGKTGSGKTAAFGLGLLEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L   R R++   +LIL PTRELA QV     +  +  +    L +  G+PF  Q   LE 
Sbjct: 66  LSVKRFRIQ---SLILCPTRELADQVGKELRRLARTIHNIKVLTLCGGVPFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI DH  +G L ++++E+LV+DEADRMLDMGF   I  I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIEDHLRKGTLRLDDLEVLVLDEADRMLDMGFQASIDAIIDQAPKKRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  +++  +++  + +P  ++  +     +           + S+   +  +LL  
Sbjct: 183 LFSATFPEKINNIAKRIMTDPIMVKAES---KHDDSVIAQHFYKVENSQDRMIALRLLLQ 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   ++ ++FCN KK V  +   L  +GFS  A+HG+++Q+ R + L  F   +  ++VA
Sbjct: 240 KYQPESSVVFCNTKKEVQEVADELANRGFSALALHGDLEQKDRDQALIRFANKSASILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++  VFN+ + +  E ++HRIGRTGRAG  G AF+  + ++   +  +E
Sbjct: 300 TDVAARGLDIDNLSAVFNYHIAHDQELHVHRIGRTGRAGNKGLAFSFYSDKEHHKVSVLE 359

Query: 362 KLIEKKV--DWLN-GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
             +++ +  + L   +L    P    +   + +  ++    P    G
Sbjct: 360 DYLDRSISPEQLPLLNLLDKEPQQSNMITIRIDGGKRQKIRPGDIVG 406


>gi|69248136|ref|ZP_00604639.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Enterococcus faecium DO]
 gi|257878212|ref|ZP_05657865.1| helicase [Enterococcus faecium 1,230,933]
 gi|257881006|ref|ZP_05660659.1| helicase [Enterococcus faecium 1,231,502]
 gi|257884664|ref|ZP_05664317.1| helicase [Enterococcus faecium 1,231,501]
 gi|257889589|ref|ZP_05669242.1| helicase [Enterococcus faecium 1,231,410]
 gi|257892472|ref|ZP_05672125.1| helicase [Enterococcus faecium 1,231,408]
 gi|258616279|ref|ZP_05714049.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecium DO]
 gi|260559258|ref|ZP_05831444.1| helicase [Enterococcus faecium C68]
 gi|293553475|ref|ZP_06674103.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1039]
 gi|293559336|ref|ZP_06675878.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1162]
 gi|293569834|ref|ZP_06680921.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1071]
 gi|294617902|ref|ZP_06697511.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1679]
 gi|294622258|ref|ZP_06701312.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium U0317]
 gi|314939754|ref|ZP_07846976.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
 gi|314942115|ref|ZP_07848971.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
 gi|314948290|ref|ZP_07851682.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
 gi|314952378|ref|ZP_07855385.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
 gi|314992003|ref|ZP_07857456.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
 gi|314995699|ref|ZP_07860789.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
 gi|68194541|gb|EAN09035.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Enterococcus faecium DO]
 gi|257812440|gb|EEV41198.1| helicase [Enterococcus faecium 1,230,933]
 gi|257816664|gb|EEV43992.1| helicase [Enterococcus faecium 1,231,502]
 gi|257820502|gb|EEV47650.1| helicase [Enterococcus faecium 1,231,501]
 gi|257825949|gb|EEV52575.1| helicase [Enterococcus faecium 1,231,410]
 gi|257828851|gb|EEV55458.1| helicase [Enterococcus faecium 1,231,408]
 gi|260075015|gb|EEW63331.1| helicase [Enterococcus faecium C68]
 gi|291587582|gb|EFF19459.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1071]
 gi|291595847|gb|EFF27131.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1679]
 gi|291598229|gb|EFF29324.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium U0317]
 gi|291602352|gb|EFF32576.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1039]
 gi|291606700|gb|EFF36092.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1162]
 gi|313590090|gb|EFR68935.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
 gi|313593438|gb|EFR72283.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
 gi|313595495|gb|EFR74340.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
 gi|313599125|gb|EFR77970.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
 gi|313640983|gb|EFS05563.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
 gi|313645271|gb|EFS09851.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
          Length = 449

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 192/365 (52%), Gaps = 9/365 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F      P +  A+   G+ +PT +Q + IPL+ +  ++ G +QTGTGKT +F+LP+  
Sbjct: 3   NFDIFRFKPFINEALTAKGFKQPTEVQERLIPLIAKGKNIIGQSQTGTGKTHTFLLPLFE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNKK 118
            +   +  V++    I  P+RELAAQ+ +   +  K     + +             N+ 
Sbjct: 63  KINAEKEEVQVV---ITAPSRELAAQIYEAATQIAKFSTPEIRVSNFVGGTDKQRQLNRL 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +   V++ TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I S +P   
Sbjct: 120 HHQQPQVVVGTPGRILDMMNEQALKIHTAFAFVVDEADMTLDMGFLNEVDQIASRLPEKL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+     +++NP   E+   +  +E IE+      +   K    +   
Sbjct: 180 QFLVFSATIPEKLRPFLRKYMENPIIEEIKPKAVISEDIEN---WLISTKGKDENQMIYQ 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +       I+F N K++V  +   L+ QG  V  IHG+I  R R +++   +    Q 
Sbjct: 237 LLTIGHPYLAIVFANTKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLEYQY 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N ++P   + +IHR+GRTGR G  G A TL +  D + ID
Sbjct: 297 VVATDLAARGIDIEGVSHVINAEIPEDLDFFIHRVGRTGRNGLKGTAITLYSPNDEQAID 356

Query: 359 AIEKL 363
           AIEKL
Sbjct: 357 AIEKL 361


>gi|253988777|ref|YP_003040133.1| ATP-dependent RNA helicase SrmB [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780227|emb|CAQ83388.1| srmB [Photorhabdus asymbiotica]
          Length = 448

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 128/368 (34%), Positives = 198/368 (53%), Gaps = 2/368 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++L L  +++ A+ + GY +PT IQ   IP  +   DV G A TGTGKTA+++LP + 
Sbjct: 5   NFSELDLDERLLDALNNKGYSRPTAIQAAAIPAAMDGRDVLGSAPTGTGKTAAYLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVA+  ++   + NL +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVANQAKELAAHTNLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFANDIETIAGETRWRKQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+  +  +     L       ++   S  E  +       A   K    L   L 
Sbjct: 185 MLFSATLEGDAIRDFAERLLKDPIE-IDAEPSRRERKKIQQFYYRADNLKHKTALLCHLL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q  +   IIF  +++ V  L   L + G     + G + Q  R + +    +G++ ++V
Sbjct: 244 KQPDVTKSIIFVRKRERVHELVDELRQAGIKAWYLEGEMVQAKRTEAVKRLNDGSVNVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++D+A+RGLDI D+ HVFNFD+P  A+ Y+HRIGRT RAGR G A TLV   D   +  I
Sbjct: 304 STDVASRGLDIDDISHVFNFDLPRTADVYLHRIGRTARAGRKGTAITLVEAHDHLLLGKI 363

Query: 361 EKLIEKKV 368
            + I + +
Sbjct: 364 SRYINEPL 371


>gi|145493274|ref|XP_001432633.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399746|emb|CAK65236.1| unnamed protein product [Paramecium tetraurelia]
          Length = 566

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 120/390 (30%), Positives = 192/390 (49%), Gaps = 16/390 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            F DL +  +++  +      KPTPIQ++ +P VL   D+ G+A +G GKT  F+LP   
Sbjct: 118 SFQDLRVDHRILKILSKMKIKKPTPIQMQGLPAVLMGRDIIGVAPSGQGKTLVFLLPALL 177

Query: 59  --MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG------I 110
             +   ++    R   P  LIL P+ ELA    +  ++Y + +       I        +
Sbjct: 178 QCIEEEMKMPVIRGEGPFALILLPSHELAILTYELAKQYCQKFQKKGFPAIHCLLGIGGM 237

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + +  G  ++I TPGRI D  N+ K+ M+    +V+DEADRMLD  F   I+NI
Sbjct: 238 DMSSQLQSIRNGVHIVIGTPGRISDMVNKKKINMDLCRFIVLDEADRMLDQVFELEIRNI 297

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQT+LFSAT+  ++Q+    F +      +      +  I    +       +
Sbjct: 298 LEHFTGPRQTMLFSATLPKKIQE----FTKQTLVDPLVINVGRSGQINLNVIQEILYVKQ 353

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L   L   + T    +IF   + +V ++   L  +G  V  +HG   Q  R K L  
Sbjct: 354 EEKLHYLLDCLKKTTPPVVIFSEHQNDVDDINEYLLIKGVEVVGLHGGKQQEDRTKALKQ 413

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F  G   ++VA+D+AA+GLD PD+ HV N+D+P   E+YIHRIGRTGR G+ G+A T V 
Sbjct: 414 FLNGQKDVLVATDVAAKGLDFPDIKHVINYDMPKDIESYIHRIGRTGRQGKTGRATTFVN 473

Query: 351 K-EDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           + ++   +  ++ L+ +    +   L  L 
Sbjct: 474 RQQEESILLDLKYLLVESKQKIPQFLEKLK 503


>gi|94499046|ref|ZP_01305584.1| ATP-dependent RNA helicase [Oceanobacter sp. RED65]
 gi|94428678|gb|EAT13650.1| ATP-dependent RNA helicase [Oceanobacter sp. RED65]
          Length = 475

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 5/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++ ++ D G+   +PIQ + +P  L   D+ G AQTGTGKTA+F++ +L  
Sbjct: 100 FHDFNLDARIMRSIQDLGFSYASPIQAEALPYTLAGRDIIGKAQTGTGKTAAFLITVLQK 159

Query: 63  LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK- 118
           L   +   R    PR LIL PTRELA Q+A + +   K  +L +  ++GG+ ++ Q ++ 
Sbjct: 160 LLTVKPEERFASEPRALILAPTRELAMQIAKDADGLSKYADLNIVTVLGGVDYDKQKEQL 219

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                DV++ TPGR+LD+  +G + ++ +E+LVIDEADRMLDMGFIP ++ I    P   
Sbjct: 220 ENEVVDVVVATPGRLLDYLQQGIVYLDQVEMLVIDEADRMLDMGFIPDLKRIIRGTPEKS 279

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
                          V         + E       +   E       +    +       
Sbjct: 280 IRQT-QLFSATYPYDVVALSESWTYKPEQVEIEPESVATETVKQQFISLQETQKDNALIE 338

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++     IIF N++    +L   L K+G     + G + Q  RMK L  FK     +
Sbjct: 339 YLEKENTGKSIIFANRRDTCRDLADRLNKRGVKALLLSGEVAQAKRMKTLDRFKSEDGAV 398

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A RG+ +  + HVFN+++P+  E+Y+HRIGRTGRAG  G A T + + +   + 
Sbjct: 399 LVATDVAGRGIHVDGITHVFNYNLPDDPEDYVHRIGRTGRAGESGTAITFIDEYEAYGLM 458

Query: 359 AIEKLIEKKV 368
            +E  + KKV
Sbjct: 459 DLESYLGKKV 468


>gi|282866591|ref|ZP_06275633.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
 gi|282558493|gb|EFB64053.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
          Length = 537

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 140/412 (33%), Positives = 218/412 (52%), Gaps = 20/412 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+  +   A+   G   P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L 
Sbjct: 20  TFRDLGILTETAEALEAVGITSPFPIQEMTLPVALSGSDVIGQAKTGTGKTLGFGLPLLE 79

Query: 62  ILE----------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
            +                   P+ LI+ PTREL  QV ++    GK  N+ V  + GG  
Sbjct: 80  RVTVPADVEAGRATPDRLTDAPQALIVVPTRELCQQVTNDLLTAGKVRNVRVLAIYGGRA 139

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q + L++G DV++ TPGR+LD   + KL +++I +LV+DEAD MLD+GF+P ++ I 
Sbjct: 140 YEPQVEALKKGVDVVVGTPGRLLDLAGQRKLDLSHIRVLVLDEADEMLDLGFLPDVERII 199

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +++P  RQT+LFSATM   +  ++  ++  P  I   +P     T+++     Y  +S  
Sbjct: 200 TMLPAKRQTMLFSATMPGAVISLARRYMSQPTHINATSPDDEGTTVKNTTQFVYRAHSMD 259

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              +   +   ++    +IFC  K+   ++   LE++GF+  A+HG++ Q +R + L  F
Sbjct: 260 KPEMVSRILQAESRGLAMIFCRTKRTAADIAEQLERRGFASGAVHGDLGQGAREQALRAF 319

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAG  G A TLV  
Sbjct: 320 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLVDW 379

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           +DI     I K +            +   P+E    + H +     P   K 
Sbjct: 380 DDIPRWQLINKALGL----------NFPDPVETYSTSPHLYEDLGIPAGTKG 421


>gi|323474157|gb|ADX84763.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           REY15A]
 gi|323476770|gb|ADX82008.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           HVE10/4]
          Length = 360

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 124/362 (34%), Positives = 196/362 (54%), Gaps = 22/362 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    LS  +  A+ +AGY+KPT +Q   IP ++    V   A+TG+GKTA++V+P+L  
Sbjct: 19  FE--NLSEDLRKALNEAGYIKPTRVQEVVIPELMNGKSVIVQAKTGSGKTAAYVIPILER 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                         IL PTRELA Q+ D  +K GK   + V+L+IGG+ ++ Q +     
Sbjct: 77  NSTAL---------ILSPTRELATQILDEIKKLGKYKQIDVSLIIGGMSYDDQRQSK--- 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LD +++GK+  +  + +++DEADRMLDMGFI  I+ I +          
Sbjct: 125 --IVVGTPGRLLDLWSKGKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCNAKIA-GF 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ DE+  ++E F ++ + I ++      E  +           K   LL++     
Sbjct: 182 FSATIPDEIMTLAEEFSKDLREIVLDEYKPVEEVKQKFVKVRNDWNDKVSKLLEE----- 236

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  ++F   +     L + L+ +G +V  + G++ Q  R+K    FK+G   ++VA+
Sbjct: 237 INGEKILVFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVAT 296

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLA+RG+DI DV  V NFD+P   E YIHR+GRTGR GR G+A T     +   I  I  
Sbjct: 297 DLASRGIDIIDVNKVINFDIPRDVETYIHRVGRTGRMGRVGQAITFYTFREADMIKRINN 356

Query: 363 LI 364
           L+
Sbjct: 357 LL 358


>gi|312084924|ref|XP_003144474.1| DEAD/DEAH box helicase [Loa loa]
 gi|307760364|gb|EFO19598.1| DEAD/DEAH box helicase [Loa loa]
          Length = 783

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 118/436 (27%), Positives = 224/436 (51%), Gaps = 15/436 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +  +GL   +   +   G+ +PTPIQ K IPL++   D+  +++TG+GKTA+FV+P+L  
Sbjct: 33  WQAIGLDHTLFKGIQKKGFRQPTPIQRKAIPLIIDGKDIVAMSRTGSGKTAAFVIPILQK 92

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +    R LI+EPTRELA Q     ++ G+   L  A+L+GG   E Q + +   
Sbjct: 93  LKVRDMKG--IRALIIEPTRELAIQTFIVVKELGRFTGLRCAVLVGGDRIEEQFQAVHEK 150

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+L         ++ ++I+V DEADR+ +MGF   +  +   +P  RQTLL
Sbjct: 151 PDIVVATPGRLLHVIVEMDFRLSAVQIIVFDEADRLFEMGFAEQLHEVLKRIPENRQTLL 210

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ + +   S+  L +P  + ++     ++ +   F        K  A +    +  
Sbjct: 211 FSATLPNSIIAFSKAGLSDPVLVRLDLAEKISDKLSMVF-LYCRSDDKLAAFIHLAREVV 269

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  ++FC   K+V  L    EK G     ++  +D  +R   +  F++    L++ +
Sbjct: 270 AGNEQTVVFCATMKHVEYLAAVAEKAGIDCVVLYSQLDCVARNINIQKFRKKECSLLIVT 329

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP +    N+  P + + ++HR+GR  RAGR GKA +L   +++ ++  +  
Sbjct: 330 DIAARGVDIPLLDVAINYHFPPKPKLFVHRVGRVARAGRFGKAISLFGADEVPYVVDLFL 389

Query: 363 LIEKKVDWLNGDLSSLNPPL----------EKIDIAQ--HNHARKNNPIPQKSTGFDRRK 410
            + + + +   D ++ +  L           ++D  +  H+++ + + + +KS    ++ 
Sbjct: 390 FLSRPLKFATTDSANKDETLIGIFPDDIIDREVDFLKNVHDNSDELDDLLKKSENAMQKY 449

Query: 411 KNYSSQKSHIPLKESE 426
           K    Q S   ++ ++
Sbjct: 450 KKTRPQPSAESVRRAK 465


>gi|45361237|ref|NP_989196.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Xenopus
           (Silurana) tropicalis]
 gi|38649000|gb|AAH63374.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Xenopus
           (Silurana) tropicalis]
          Length = 699

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 140/428 (32%), Positives = 221/428 (51%), Gaps = 29/428 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ +   ++  +  + Y +PTP+Q   IP+++++ D+   AQTG+GKTA+F+LP+L+
Sbjct: 223 SFQDVTMGEIIMGNIQLSRYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPILS 282

Query: 62  ILE---------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
            +                +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 283 QIYADGPGDAMKHLKENGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVV 342

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++    LV+DEADRMLDMGF P 
Sbjct: 343 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCNYLVLDEADRMLDMGFEPQ 402

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      RQT++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 403 IRRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVV 462

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK    L   L  +G++  +IHG+  QR
Sbjct: 463 WVEEMDKRSFLLDLLNATGKDSL--TLVFVETKKGADALEDFLYHEGYACTSIHGDRSQR 520

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 521 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 580

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQ 401
           G A +   +++I     +       +D L      +   LE +   QH+ +  +     +
Sbjct: 581 GLATSFFNEKNINITKDL-------LDLLVEAKQEVPSWLENMAYEQHHKSSTRGRSKSR 633

Query: 402 KSTGFDRR 409
            S GF  R
Sbjct: 634 FSGGFGAR 641


>gi|299470793|emb|CBN79839.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 572

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 136/396 (34%), Positives = 203/396 (51%), Gaps = 18/396 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F        +  A+  AGY  PTP Q ++ P+ L   D+  +A+TG+GKT  F+LP   
Sbjct: 147 SFESTPFGGPIRGALKAAGYPAPTPTQAQSWPIALSGRDIISVARTGSGKTLGFLLPAFH 206

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                    + R+  P  ++L PTRELA Q+ +   K+GK   +    + GG P   Q K
Sbjct: 207 ALLNRPGGCKPRMGGPYIVVLAPTRELACQINEEATKFGKAAGIRSTTVYGGSPKYPQIK 266

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            ++ G  V+I TPGR+ D    GK+ M N+  L +DEADRMLDMGF P I+ I   +P  
Sbjct: 267 AIQSGVQVVIATPGRLNDIMEMGKINMTNVMTLALDEADRMLDMGFEPQIRTIIDAMPAK 326

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV------NTPSSTAETIEHCFVATYAQYSKK 231
           RQTL F+AT   E+Q+++ +F+ NP  I V      N   S  + I             +
Sbjct: 327 RQTLFFTATWPKEVQRLARDFVTNPVHITVGDAGKLNANKSITQHIHIVDERDKGDKLWE 386

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                     +      IIF ++K+N   L  +   +GF+V ++HG+ +Q  R K++  +
Sbjct: 387 LLTKLHENPPKADHGKTIIFSSKKRNCDKLAQAAWDRGFAVDSLHGDREQWERTKVMDQY 446

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNR-AENYIHRIGRTGRAGRHGKAFTLVA 350
           + G ++++VA+D+AARGLD+ D+ +V N+D P    ENYIHRIGRT R    G AFT   
Sbjct: 447 RSGEVRMLVATDVAARGLDVKDISYVINYDFPVDGVENYIHRIGRTARGNASGDAFTFFT 506

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
             D K  + +       V  L G    +   L+K+D
Sbjct: 507 SSDAKFANKL-------VGVLRGANQDVPAELQKMD 535


>gi|213402561|ref|XP_002172053.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000100|gb|EEB05760.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces japonicus
           yFS275]
          Length = 626

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 136/396 (34%), Positives = 213/396 (53%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L+P ++  +  +GYV+PTP+Q  ++P+V    D+   AQTG+GKTA F+ P+L+
Sbjct: 163 EFTNPPLNPHLLTNIKLSGYVQPTPVQKYSVPIVTSGRDLMACAQTGSGKTAGFLFPILS 222

Query: 62  ILEKG---------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                               R+R   P TLIL PTREL  Q  +   K+     +    +
Sbjct: 223 QAFDQGPAPIPHDEDSALGYRSRKAYPTTLILAPTRELVCQTHEESRKFCYRSWVRPCAV 282

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    AQ +++++G D+L  TPGR++D  +RG++ + NI+ LV+DEADRMLDMGF P 
Sbjct: 283 YGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQ 342

Query: 167 IQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I++I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I    V
Sbjct: 343 IRHIVEGADMPGVEERQTLMFSATFPRDIQVLARDFLKDYVFLSVGRVGSTSENITQKVV 402

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
               Q  +    L  +L +       +IF   K+    L   L    F   +IHG+  QR
Sbjct: 403 FVEDQEKRS--YLLDILHTLPPEGLTLIFVETKRMADALTDFLLNSSFPATSIHGDRTQR 460

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   +MVA+ +A+RGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  
Sbjct: 461 ERERALELFRSGRSSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 520

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G+A     + +      + +L+++        L ++
Sbjct: 521 GQAVAFFNRNNKGIAKELIELLQEANQECPSFLVAM 556


>gi|195579916|ref|XP_002079802.1| GD24145 [Drosophila simulans]
 gi|194191811|gb|EDX05387.1| GD24145 [Drosophila simulans]
          Length = 641

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 125/433 (28%), Positives = 203/433 (46%), Gaps = 34/433 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + G   +++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L+
Sbjct: 214 SWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLS 273

Query: 62  ILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            ++            + P  +I+ PTRELA Q+ +   K+G+   +   +++GG+  E Q
Sbjct: 274 WIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQ 333

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 334 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 393

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            T           +     +    +  ++  + T +                        
Sbjct: 394 VTNLKPDTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSV 453

Query: 215 -ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            +  E      Y             + S+      IIF NQKK    L   LEK G++ C
Sbjct: 454 GKPTERTEQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSC 513

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            +HG   Q  R   L+  K G   ++VA+D+A RG+DI DV  V N+D+    E+Y HRI
Sbjct: 514 TLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRI 573

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           GRTGRAG+ G A + V K+D      +++ +          +S+  P L     AQH   
Sbjct: 574 GRTGRAGKTGCAISFVTKDDSALFYDLKQCVSA------SPVSTCPPELMNHPEAQHKPG 627

Query: 394 RKNNPIPQKSTGF 406
                  ++   F
Sbjct: 628 TVVTKKRREEKIF 640


>gi|16768302|gb|AAL28370.1| GM01081p [Drosophila melanogaster]
          Length = 641

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 125/433 (28%), Positives = 203/433 (46%), Gaps = 34/433 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + G   +++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L+
Sbjct: 214 SWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLS 273

Query: 62  ILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            ++            + P  +I+ PTRELA Q+ +   K+G+   +   +++GG+  E Q
Sbjct: 274 WIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQ 333

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 334 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 393

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            T           +     +    +  ++  + T +                        
Sbjct: 394 VTNLKPDTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSV 453

Query: 215 -ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            +  E      Y             + S+      IIF NQKK    L   LEK G++ C
Sbjct: 454 GKPTERTEQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSC 513

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            +HG   Q  R   L+  K G   ++VA+D+A RG+DI DV  V N+D+    E+Y HRI
Sbjct: 514 TLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRI 573

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           GRTGRAG+ G A + V K+D      +++ +          +S+  P L     AQH   
Sbjct: 574 GRTGRAGKTGCAISFVTKDDSALFYDLKQCVSA------SPVSTCPPELMNHPEAQHKPG 627

Query: 394 RKNNPIPQKSTGF 406
                  ++   F
Sbjct: 628 TVVTKKRREEKIF 640


>gi|256088378|ref|XP_002580316.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665869|emb|CAZ36555.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 730

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 134/427 (31%), Positives = 220/427 (51%), Gaps = 35/427 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A++ ++ ++   +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 301 SWAEMNVADELKDVIKKVGYPEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLN 360

Query: 62  ILEKGR------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +++           + P  +I+ PTRELA Q+ +   K+G+   +    LIGG+  E Q
Sbjct: 361 WIQRLPKLERLEDTEQGPYAIIMAPTRELAQQIEEETVKFGRPLGIKTVSLIGGLSREDQ 420

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-- 173
             KL  GA+++I TPGR+ D      +++N    +V+DEAD+M+DMGF P + NI +   
Sbjct: 421 ALKLRMGAEIVIGTPGRLNDVLENRYMVLNQCTYIVLDEADKMIDMGFEPEVNNILTYLP 480

Query: 174 -----------------------VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
                                      RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 481 VTNEKPDNEDAEDDSKLLSNFATKHKYRQTVMFTATMPPAVERLARSYLRRPAMVYIGSA 540

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               E +E        Q  +        + +       IIF NQKK    L   LEK G+
Sbjct: 541 GKPTERVEQIVYMVSEQEKR---RKLLEILAAGLDPPVIIFVNQKKGADVLAKGLEKLGY 597

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG   Q  R   L++ K G  +++VA+D+A RG+DI DV  V N+D+    + Y+
Sbjct: 598 SAVVLHGGKGQEQREYALASLKSGQKEILVATDVAGRGIDIKDVSMVINYDMSKTIDEYV 657

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK-LIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
           HRIGRTGRAG+ G A +L+ KED      +++ LI+  V     +L++      K  I  
Sbjct: 658 HRIGRTGRAGKSGIAISLLTKEDAPVFYDLKQLLIQSPVSTCPHELANHPDAQTKPGILA 717

Query: 390 HNHARKN 396
               R  
Sbjct: 718 AKKRRAE 724


>gi|256088376|ref|XP_002580315.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665868|emb|CAZ36554.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 793

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 134/427 (31%), Positives = 220/427 (51%), Gaps = 35/427 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A++ ++ ++   +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 364 SWAEMNVADELKDVIKKVGYPEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLN 423

Query: 62  ILEKGR------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +++           + P  +I+ PTRELA Q+ +   K+G+   +    LIGG+  E Q
Sbjct: 424 WIQRLPKLERLEDTEQGPYAIIMAPTRELAQQIEEETVKFGRPLGIKTVSLIGGLSREDQ 483

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-- 173
             KL  GA+++I TPGR+ D      +++N    +V+DEAD+M+DMGF P + NI +   
Sbjct: 484 ALKLRMGAEIVIGTPGRLNDVLENRYMVLNQCTYIVLDEADKMIDMGFEPEVNNILTYLP 543

Query: 174 -----------------------VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
                                      RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 544 VTNEKPDNEDAEDDSKLLSNFATKHKYRQTVMFTATMPPAVERLARSYLRRPAMVYIGSA 603

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               E +E        Q  +        + +       IIF NQKK    L   LEK G+
Sbjct: 604 GKPTERVEQIVYMVSEQEKR---RKLLEILAAGLDPPVIIFVNQKKGADVLAKGLEKLGY 660

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG   Q  R   L++ K G  +++VA+D+A RG+DI DV  V N+D+    + Y+
Sbjct: 661 SAVVLHGGKGQEQREYALASLKSGQKEILVATDVAGRGIDIKDVSMVINYDMSKTIDEYV 720

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK-LIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
           HRIGRTGRAG+ G A +L+ KED      +++ LI+  V     +L++      K  I  
Sbjct: 721 HRIGRTGRAGKSGIAISLLTKEDAPVFYDLKQLLIQSPVSTCPHELANHPDAQTKPGILA 780

Query: 390 HNHARKN 396
               R  
Sbjct: 781 AKKRRAE 787


>gi|117617930|ref|YP_855071.1| ATP-independent RNA helicase DbpA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559337|gb|ABK36285.1| ATP-independent RNA helicase DbpA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 458

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 146/459 (31%), Positives = 236/459 (51%), Gaps = 21/459 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ L LSP +   +   GY++ TPIQ +++PLVL   D+   A+TG+GKTA+F L +L 
Sbjct: 4   EFSSLNLSPALQDNLASLGYLQMTPIQAQSLPLVLDGKDLIAKAKTGSGKTAAFGLGLLA 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+  R  V+    L+L PTRELA QVA    +  +       + +  G P   Q+  L 
Sbjct: 64  NLDVNRLEVQ---ALVLCPTRELADQVATEIRRLARTLPNVKLVTLCGGTPTAPQSATLS 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA + + TPGRIL H  +G L ++ ++ LV+DEADRMLDMGF   I  + S  P  RQT
Sbjct: 121 FGAHIAVGTPGRILKHLEQGTLELDGLKTLVLDEADRMLDMGFGEDINRVISHAPRDRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + + +      +  +R  V     +           Y   + +       L 
Sbjct: 181 LLFSATYPEGIAQ----MSRGVQRNPVEVSVESLHEDSAIEQKLYEVPAGQRLDALGWLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN K+   ++   L  +GFS  A++G+++QR R ++L  F  G+  ++V
Sbjct: 237 SHYQPSSCVVFCNTKRACNDVADHLAAKGFSALALNGDLEQRERDQVLVRFANGSATILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++G V N+++    E ++HRIGRTGRAG+ G A +L    + + ++ I
Sbjct: 297 ATDVAARGLDIKELGAVINYELTYDPEVHVHRIGRTGRAGQQGLALSLYQPNEAQRVNFI 356

Query: 361 EKLIEKKVDW-----LNGDLSSLNPPLEK--IDIAQHNHARKNNPI-----PQKSTGFDR 408
           E+  +  +       +  D+  + P +    ID  + +  R  + +          G D 
Sbjct: 357 EEYQQAPIPQGDLAGIGRDIKPIAPQMVTLSIDAGRKSKVRAGDILGALTGEGGIAGADV 416

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
            K   S Q S++ +K     + L++ +QE       +R 
Sbjct: 417 GKIQISEQYSYVAVKRQVASAALKR-LQEGKIKGRSYRA 454


>gi|255087406|ref|XP_002505626.1| predicted protein [Micromonas sp. RCC299]
 gi|226520896|gb|ACO66884.1| predicted protein [Micromonas sp. RCC299]
          Length = 620

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 117/390 (30%), Positives = 199/390 (51%), Gaps = 8/390 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F  L LS + +  + + GY + T +Q +TIP +L   DV G A+TG+GKT +F++P + 
Sbjct: 120 TFDSLTLSKQTMAGISELGYTRMTEVQARTIPPLLAGRDVLGAARTGSGKTLAFLIPSVE 179

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +             ++L PTRELA Q+ +  ++  K ++ T  L+IGG    A+ +KL 
Sbjct: 180 LLYHAKFMPRNGTGVMVLSPTRELALQIYNVAQQLMKKHSQTHGLIIGGANRRAEAEKLV 239

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNI-EILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G ++L+ TPGR+LDH    K       ++  +DEADRMLD+GF   ++ I  ++P  RQ
Sbjct: 240 KGVNLLVATPGRLLDHMQNTKGFAFGSLKVFCMDEADRMLDIGFEEEMRTIVRMIPKDRQ 299

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT T +++ ++   L++P  I V+   + +               K   LL    
Sbjct: 300 TMLFSATQTTKVEDLARLSLKSPTYIGVDDARAVSTATGVEQGYCVVPSEK-RFLLLFTF 358

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  ++F +   +V      L      V  IHG   Q+ R      F +    ++
Sbjct: 359 LKKNLKKKVMVFFSSCNSVKYHAELLNYIDIPVSDIHGKQKQQRRTTTFFEFCKADRGIL 418

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHID 358
           + +D+AARGLDIP V  +  FD P+  + YIHR+GRT R     G+A   +  E++  + 
Sbjct: 419 LCTDVAARGLDIPAVDWIIQFDPPDDPKEYIHRVGRTARGTEGKGRALLFLIPEELGFLK 478

Query: 359 AIEKLIEKKV---DWLNGDLSSLNPPLEKI 385
            + K  +  +   ++    ++++   LEK+
Sbjct: 479 YL-KAAKVPLNEYEFPQKKIANVQSQLEKL 507


>gi|71897029|ref|NP_001025896.1| probable ATP-dependent RNA helicase DDX52 [Gallus gallus]
 gi|60098635|emb|CAH65148.1| hypothetical protein RCJMB04_4d17 [Gallus gallus]
          Length = 603

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 106/376 (28%), Positives = 185/376 (49%), Gaps = 15/376 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     + PKV+  +  AG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 156 TFDQLQKEYKVHPKVIENIQAAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFCI 215

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+LT L++   +      LI+ PTRELA+Q      K           +       +   
Sbjct: 216 PLLTHLKQPMNKGFR--ALIISPTRELASQTHRELVKLADGTGFRIHMIQKASEAAKKFG 273

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  R  D+L+ TP R++    +    ++  ++E LV+DE+D++ + G   +        
Sbjct: 274 PKSSRKFDILVTTPNRLIYLLKQDPPAIDLTSVEWLVVDESDKLFEDGKSGFRDQLASIF 333

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +   FSAT   ++++  +  L +   + V   +S AET+E   +   ++  K
Sbjct: 334 LACTSHVVRRAFFSATFAHDVEEWCKLNLDSIVLVSVGARNSAAETVEQELLFVGSETGK 393

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +        ++F    +    L H L  +G +V  IH +  Q+ R  ++ +
Sbjct: 394 LTAMRELVKKGFAPP--VLVFVQSIERAKELFHELIYEGINVDVIHADKTQQQRDNVVHS 451

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D+P  A  YIHRIGRTGRAG  GKA T   
Sbjct: 452 FRAGKIWVLICTALLARGIDFKGVNMVINYDLPTSAVEYIHRIGRTGRAGHTGKAVTFFT 511

Query: 351 KEDIKHIDAIEKLIEK 366
           ++D   + +I  +I++
Sbjct: 512 EDDKPLLRSIANVIQR 527


>gi|293331893|ref|NP_001169380.1| hypothetical protein LOC100383248 [Zea mays]
 gi|224029005|gb|ACN33578.1| unknown [Zea mays]
          Length = 498

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 129/349 (36%), Positives = 203/349 (58%), Gaps = 2/349 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   G   +++  +  AG+  PTPIQ ++ P+ +Q  DV  IA+TG+GKT  ++LP   
Sbjct: 151 SFEAGGFPSEILKEIQRAGFASPTPIQAQSWPIAMQNQDVVAIAKTGSGKTLGYLLPGFM 210

Query: 62  ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++ +   R  P  L+L PTRELA Q+ D   K+G++  ++   L GG P   Q + L+
Sbjct: 211 HIKRLQNSTRNGPTVLVLAPTRELATQILDEAVKFGRSSRISCTCLYGGAPKGPQLRDLD 270

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGR+ D     K+ +  +  LV+DEADRMLDMGF P I+ I   +P  RQT
Sbjct: 271 RGVDVVVATPGRLNDILEMRKVSLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPHRRQT 330

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+++AT   E+++++++ L +P ++ + +  S                S+K   L+Q+L+
Sbjct: 331 LMYTATWPKEVRRIADDLLVHPVQVTIGSVDSLVANSSITQHVEIITPSEKQRRLEQILR 390

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQD+  + I+     K + +       + F   AIHG+  Q  R K+L+ F+ G   ++V
Sbjct: 391 SQDSG-SKILIFCTTKRMCDQLARTLTRQFGASAIHGDKSQSEREKVLNQFRSGRSPILV 449

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           A+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G A+  +
Sbjct: 450 ATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYIFL 498


>gi|126434048|ref|YP_001069739.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           JLS]
 gi|126233848|gb|ABN97248.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. JLS]
          Length = 507

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 149/430 (34%), Positives = 231/430 (53%), Gaps = 21/430 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LG+  ++  A+ + G  +P  IQ  T+P+ L   D+ G A+TG GKT +F +P+L
Sbjct: 10  MTFASLGVRDEICRALAEEGIHQPFAIQELTLPMALAGDDLIGQARTGMGKTYAFGVPLL 69

Query: 61  TILEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKN-----YNLTVALLIGGIPFE 113
             +     +    +PR LI+ PTREL  QV  +     K        L+V  + GG P+E
Sbjct: 70  QRVTTDTEKELSGIPRALIVVPTRELCLQVHSDLSLAAKYLTAGDRKLSVVSIYGGRPYE 129

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L +GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+ I   
Sbjct: 130 PQIESLRKGADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQ 189

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
            P TRQ +LFSATM D +  ++  F+  P  I   +P S+A        A  A    K  
Sbjct: 190 TPDTRQAMLFSATMPDPIITLARTFMNQPTHIRAESPQSSATHDTTAQFAYRAHALDKVE 249

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           ++ ++LQ+       I     K+    +   L ++GF V A+HG++ Q +R K L +F+ 
Sbjct: 250 MVSRILQADGRGATMIFT-RTKRTAQKVADELAERGFKVGAVHGDLGQGAREKALKSFRT 308

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G + ++VA+D+AARG+DI D+ HV NF +P   + Y+HRIGRTGRAG+ G A TLV  ++
Sbjct: 309 GEVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGVAVTLVDWDE 368

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG-FDRRKKN 412
           +     I+K +            +   P E    + H +  +   IP ++ G     K  
Sbjct: 369 LPRWSMIDKALGL----------NTPDPAETYSSSPHLY--EELGIPTEAGGSVGEPKAR 416

Query: 413 YSSQKSHIPL 422
            ++++S  P 
Sbjct: 417 AAAKRSERPA 426


>gi|332372808|gb|AEE61546.1| unknown [Dendroctonus ponderosae]
          Length = 423

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 208/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 51  NFDDMSLKEELLRGIYAYGFEKPSAIQQRAIIPCVKGHDVIAQAQSGTGKTATFSISILQ 110

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     VR  + LIL PTRELA Q+       G   +      IGG       +KL+ 
Sbjct: 111 QIDTT---VRECQALILAPTRELAQQIQKVVIALGDFMSAQCHACIGGTNVREDMRKLDT 167

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L   +I++ V+DEAD ML  GF   I ++   +    Q +
Sbjct: 168 GVHVVVGTPGRVFDMINRRALRPQHIKMFVLDEADEMLSRGFKDQIHDVFKTLNADVQVI 227

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++  V+++F++ P RI V     T E I+  FV    +  K   L       
Sbjct: 228 LLSATMPPDVLDVTKSFMRAPIRILVKKEELTLEGIKQFFVYVEKEDWKLETLCDL--YD 285

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L  S+ K+ F+V A+HG+++Q+ R  I+  F+ G+ ++++ 
Sbjct: 286 TLSITQAVIFCNTRRKVDWLTESMHKKDFTVSAMHGDMEQKERDVIMRQFRTGSSRVLIT 345

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V ++D ++++ IE
Sbjct: 346 TDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEDDKRNLNDIE 405

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     +  +  +++ L
Sbjct: 406 KFYNTNIAEMPMNVADL 422


>gi|328699290|ref|XP_001948649.2| PREDICTED: ATP-dependent RNA helicase vasa, isoform A-like
           [Acyrthosiphon pisum]
          Length = 678

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 112/387 (28%), Positives = 187/387 (48%), Gaps = 11/387 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL   ++  + +  +  PTP+Q   IP++++  D+   AQTG+GKTA++VLP+L 
Sbjct: 254 SFQSSGLRTILLDNLSNCNFSTPTPVQNYAIPIIIEGRDLMASAQTGSGKTAAYVLPILH 313

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                            P  +I+ PTREL +Q+++   K+ K  ++   LL GG     Q
Sbjct: 314 NLLKQPTQLIYDEHHCEPHVVIIAPTRELVSQISECVWKFSKGTDIRNGLLYGGTSVYHQ 373

Query: 116 NKKL-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             K+ +RG  +L  TPGR++D   +G +  ++++  V+DEADRMLDMGF P I+ + +  
Sbjct: 374 KSKILQRGVHILTATPGRLIDFVEKGIVTFSSVKFFVLDEADRMLDMGFKPDIEQVLTNS 433

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNP---KRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                    +   +       ++   +      I V          +           KK
Sbjct: 434 TMPSIESRQTIMFSATFASPIQHMATSYLKSDYIFVAVGEIGGACKDVVQTVIEVTKFKK 493

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L  +++  +  +  I+F  +KK        L +  F   +IHG  +Q  R + L +F
Sbjct: 494 KNALLDIIKEMENCQGTIVFVERKKVADYTAAYLSEVDFPTTSIHGAREQPEREQALRDF 553

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K   ++++VA+ +AARGLDI  V +V NFD+P   + Y+HRIGRTGR G  GKA +    
Sbjct: 554 KTNRMKILVATAVAARGLDIKGVNYVVNFDLPKTIDEYVHRIGRTGRLGNAGKAISFFDP 613

Query: 352 E-DIKHIDAIEKLIEKKVDWLNGDLSS 377
           E D      + K++++    +   L+ 
Sbjct: 614 ESDGPLAAELIKILKQADQEVPSFLND 640


>gi|255723333|ref|XP_002546600.1| hypothetical protein CTRG_06078 [Candida tropicalis MYA-3404]
 gi|240130731|gb|EER30294.1| hypothetical protein CTRG_06078 [Candida tropicalis MYA-3404]
          Length = 572

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 112/390 (28%), Positives = 192/390 (49%), Gaps = 8/390 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  LS   + A+ + G+ K T +Q KTIP +L   DV G A+TG+GKT +F++P + +
Sbjct: 115 FEDADLSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEL 174

Query: 63  LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   + + R     +I+ PTRELA Q+     +  + ++ T  ++IGG     +  KL +
Sbjct: 175 LYSLKIKPRNGTAVIIITPTRELALQIFGVARELMQYHSQTCGIVIGGADRRQEATKLAK 234

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           G ++L+ TPGR +    N    + +N++ LVIDEADR+L++GF   ++ I  ++P   + 
Sbjct: 235 GVNLLVATPGRLLDHLKNTPGFVFSNLKALVIDEADRILEIGFEDEMKQIIKILPNEDRQ 294

Query: 181 LL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSAT T +++ ++   L+         P     T +          S K  LL    
Sbjct: 295 SMLFSATQTTKVEDLARMSLRPGPLYINVVPDKDVSTADGLEQGYVVCDSDKRFLLLFSF 354

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  I+F +   +V      L      V  +HG   Q+ R      F      ++
Sbjct: 355 LKRNVKKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGIL 414

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHID 358
           V +D+AARGLDIP V  +  FD P+   +YIHR+GRT R  +  GK+   +   ++  + 
Sbjct: 415 VCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELGFLR 474

Query: 359 AIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
            + K  +  ++        ++++   L K+
Sbjct: 475 YL-KAAKVPLNEYEFPSNKIANIQSQLTKL 503


>gi|161506980|ref|YP_001576934.1| putative RNA helicase [Lactobacillus helveticus DPC 4571]
 gi|160347969|gb|ABX26643.1| putative RNA helicase [Lactobacillus helveticus DPC 4571]
          Length = 453

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 134/440 (30%), Positives = 208/440 (47%), Gaps = 13/440 (2%)

Query: 1   MD--FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           M+  FAD  + P +   +    + KPT +Q K IP +L    V   A TG+GKT ++++P
Sbjct: 1   MNNIFADSRIRPAIQEGLKKIHFEKPTKVQEKVIPAMLSDLSVVVQAATGSGKTHAYLVP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +   +++    V+   TL      +   QVA         +     L  G        K 
Sbjct: 61  IFNEIDEDAHYVQAIVTLPSRELADQLYQVARQLRDAAGMHFSIAHLAGGTDRERQLEKY 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 ++I TPGR+LD   +   +++ ++  VIDEAD  LDMGF+  I  + S +P   
Sbjct: 121 QNNTPQLVIATPGRLLDFVQKKVFVVDQVKTFVIDEADMTLDMGFLADIDQVASKMPKDV 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q   FSAT+  +L      ++ +P +I ++ PS  A TI           SK    +   
Sbjct: 181 QIAAFSATIPVKLSNFLRKYMAHPDQIVIDNPSVIAPTI---KNDLLDIGSKNRKSVLYK 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +       ++F N K+ V  L   L+ QG  V  IHG + +R R + L   ++G  Q 
Sbjct: 238 LLTMGQPYLALVFANTKQTVDELTRYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQFQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARGLDI  V  V N+++P   E  IHRIGRTGR G  G A TL+ +E++  I+
Sbjct: 298 VVASDLAARGLDIDGVSLVINYEIPRDIEFVIHRIGRTGRNGLSGHAITLIREEEMNRIE 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF-----DRRKKNY 413
            +EK +    D++      L P   K   ++ N   KN+    K  G+      +RK  Y
Sbjct: 358 DLEK-MGVHFDFVEIKNGELVP--RKHYRSRENRQVKNHKFDTKLVGYVKKEKRKRKPGY 414

Query: 414 SSQKSHIPLKESEKISKLQQ 433
             +      +++ +  KL+Q
Sbjct: 415 KKKIKRAIQEDNRQKRKLEQ 434


>gi|77736089|ref|NP_001029743.1| ATP-dependent RNA helicase DDX19A [Bos taurus]
 gi|122140837|sp|Q3ZBV2|DD19A_BOVIN RecName: Full=ATP-dependent RNA helicase DDX19A; AltName: Full=DEAD
           box protein 19A
 gi|73587381|gb|AAI03094.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19A [Bos taurus]
 gi|296478245|gb|DAA20360.1| ATP-dependent RNA helicase DDX19A [Bos taurus]
          Length = 478

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 103/382 (26%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 92  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 151

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      R P+ L L PT ELA Q     E+ GK +               + +K+
Sbjct: 152 LSRVEPAE---RYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKI 208

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 209 SEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 268

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        +
Sbjct: 269 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNSRDEK--FQALCNI 326

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 327 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGKEKVL 386

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 387 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 446

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 447 SMNILNRIQEHFNKKIERLDTD 468


>gi|311257035|ref|XP_003126920.1| PREDICTED: ATP-dependent RNA helicase DDX19B-like isoform 1 [Sus
           scrofa]
          Length = 479

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 106/382 (27%), Positives = 177/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL M
Sbjct: 93  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 152

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      R P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 153 LSQVEPAN---RYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 209

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 210 SEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 269

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V    +  K        L
Sbjct: 270 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNRDEK--FQALCNL 327

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 328 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGKEKVL 387

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 388 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 448 SMNILNRIQEHFNKKIERLDTD 469


>gi|300176015|emb|CBK22232.2| unnamed protein product [Blastocystis hominis]
          Length = 426

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 93/382 (24%), Positives = 168/382 (43%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L  +++ A+ D G+  P+ +Q   IP  +   DV   A++G GKTA FV+  L 
Sbjct: 47  SFKDFYLKDEILKAISDCGFEHPSEVQHACIPRAITNKDVLCQAKSGMGKTAVFVISTLQ 106

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L+       +   +I            +         N+   +  GG   +A  + L  
Sbjct: 107 MLKDDPENQDIQVLVIAHTRELAFQIQNEYKRFTKFMPNVRTEVFFGGRNIQADREALNT 166

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD-MGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+ D   RG + ++ +   V+DE D ++  +     +Q+I +  P  +Q 
Sbjct: 167 HPAIVVGTPGRVEDLIKRGWMKVDKLRHFVVDECDHIITSINMRAQLQSIFTACPIDKQV 226

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++F+AT+  E + V   F+++P  IE++  +    T+          Y  +       L 
Sbjct: 227 MMFTATLPPEAKAVCLRFMKDPLMIELDESAL---TLHGLQQYYLTIYDNQKTKKLMDLL 283

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF         L + L +  F+   I G++    R++    FK    +++V
Sbjct: 284 DTLEFNQIVIFVRNSARARELSNILNRDQFNNTCITGDMSTEDRLEHYKRFKGFDYRILV 343

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +++L  RG+D+  V  V N+D P  A  Y+HR+GR GR G  G A + V  E+ K     
Sbjct: 344 STNLFGRGIDVDKVNVVINYDFPETANEYLHRVGRAGRFGTKGLAISFVTTEEDK----- 398

Query: 361 EKLIEKKVDWLNGDLSSLNPPL 382
                K+++ +    +   PPL
Sbjct: 399 -----KRMEEVQMKFAVDVPPL 415


>gi|302309551|ref|NP_986999.2| AGR333Cp [Ashbya gossypii ATCC 10895]
 gi|299788412|gb|AAS54823.2| AGR333Cp [Ashbya gossypii ATCC 10895]
          Length = 504

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 112/391 (28%), Positives = 192/391 (49%), Gaps = 8/391 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS + + A+   G+ K T +Q +TIP ++   DV G A+TG+GKT +F+LP + 
Sbjct: 40  KFDELNLSSQTLKAIGKMGFTKMTQVQARTIPPLMAGRDVLGAAKTGSGKTLAFLLPAIE 99

Query: 62  ILEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   + + R    +I + PTRELA Q+     +  + ++ T  ++IGG     + +KL 
Sbjct: 100 MLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLA 159

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G ++LI TPGR +    N    +  N++ LVIDEADR+L++GF   ++ I  ++P   +
Sbjct: 160 KGVNLLIATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEDEMKQIIKILPNEDR 219

Query: 180 TLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             + FSAT T +++ ++   L+               T +          S K  LL   
Sbjct: 220 QSMLFSATQTTKVEDLARISLRPGPLFINVDSEKETSTADGLEQGYVVCDSDKRFLLLFT 279

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   K  I+F +   +V      L      V  +HG   Q+ R      F      +
Sbjct: 280 FLKKFQNKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGI 339

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHI 357
           +V +D+AARGLDIP V  +  FD P+   +YIHR+GRT R  +  GK+   +   ++  +
Sbjct: 340 LVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPHELGFL 399

Query: 358 DAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
             + K  +  ++        ++++   LEK+
Sbjct: 400 RYL-KAAKVPLNEYEFPANKIANVQSQLEKL 429


>gi|328767309|gb|EGF77359.1| hypothetical protein BATDEDRAFT_91848 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 630

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 128/396 (32%), Positives = 205/396 (51%), Gaps = 17/396 (4%)

Query: 2   DFADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F ++ +   +V  + +  G VKPTPIQ++ +P      D+ GIA TG+GKT  F+LP++
Sbjct: 183 TFREMRIPSAIVSYLKNTKGIVKPTPIQVQGLPTAFSGRDMIGIAFTGSGKTLVFILPLV 242

Query: 61  TILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGK------NYNLTVALLIGG 109
            +  +   R+       P  LIL P+RELA Q  D  ++  +        ++ V L +GG
Sbjct: 243 MLALEAETRLPWIQGEGPVGLILCPSRELARQTYDFTKELCEALEQSGYPSIRVLLCMGG 302

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           I    Q   L  GA +++ TPGR+ D   + K  +NN + L +DEADRM+DMGF   ++N
Sbjct: 303 ISMAEQGSVLRAGAHIVVATPGRLQDMLEKNKFNLNNCKYLCMDEADRMIDMGFEDDVRN 362

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I S     RQTLLFSATM  ++Q     F ++     V      A       +       
Sbjct: 363 IMSFFKSQRQTLLFSATMPKKIQN----FAKSALISPVVVNVGRAGAANLDVIQEVEYVK 418

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           ++  ++  L   Q T    ++F   K +V ++   L  +G    AIHG+ DQ  R   + 
Sbjct: 419 QEAKMVYLLECLQKTPPPVVVFAENKNDVDDIHEYLLLKGIEAVAIHGSKDQEEREFAIK 478

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK     ++VA+D+A++GLD   + HV N+D+P   E+Y+HRIGRTGR+G+ G A T +
Sbjct: 479 SFKACKADVLVATDVASKGLDFSMIQHVINYDMPKEIEDYVHRIGRTGRSGKTGVATTFI 538

Query: 350 AKEDIKH-IDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
            +   +  +  ++ L+ +    +   L ++  P EK
Sbjct: 539 NRNSSEQILLDLKYLLREAKQRVPPVLEAIPDPTEK 574


>gi|146419343|ref|XP_001485634.1| hypothetical protein PGUG_01305 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 862

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 119/398 (29%), Positives = 191/398 (47%), Gaps = 15/398 (3%)

Query: 2   DFADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            +A LGL   ++  + +  GY  P+PIQ + +P ++   D+ G+A TG+GKT +FV+P++
Sbjct: 267 KWAQLGLPSSIMTVLEEKLGYDTPSPIQSQALPAIMSGRDIIGVANTGSGKTLAFVIPLI 326

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +           P  +IL PTRELA Q+      + +   L+V    GG P E+Q   
Sbjct: 327 RHIMDQPPLKSGDGPIGVILTPTRELALQIQKELVNFTQAVELSVCCCYGGSPIESQIAD 386

Query: 119 LERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           L+RG ++++ TPGR++D           +     LV+DEADRM DMGF P +  + S + 
Sbjct: 387 LKRGTEIIVGTPGRVIDLLAANGGRVTNLRRTTFLVLDEADRMFDMGFEPQVNKVLSQIR 446

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +Q +LFSAT   +L+ ++ +FL +P  I     S  A  I    V            L
Sbjct: 447 PDKQMVLFSATFPKKLESLARSFLVDPIEIVAGGISVVAPEITQRVVLIDDSGDISQKKL 506

Query: 236 Q-------QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           Q       +        K  I    Q+     +   L  Q   +    G      +  I 
Sbjct: 507 QALLKIVDEFSVEDPEGKILIFVDKQEAADDLMVRLLNNQILCIVIHGGKDQVDRKHAIK 566

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
               +  +++++A+ +AARGLD+  +  V N+D P+  E+Y+HR+GRTGRAG  G A TL
Sbjct: 567 QFSDKNGLRVLIATSIAARGLDVRGLNLVINYDAPSHMEDYVHRVGRTGRAGATGTAVTL 626

Query: 349 VAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPPLEK 384
           V     + I  + + ++   KVD +  +L S+     K
Sbjct: 627 VLSSQEREIRDLVRAMKMSGKVDDIPAELQSIADKFLK 664


>gi|54038020|gb|AAH84268.1| LOC495097 protein [Xenopus laevis]
          Length = 717

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 129/371 (34%), Positives = 201/371 (54%), Gaps = 2/371 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   V+  GY  PTPIQ K +P++L   DV  +A+TG+GKTA F++PM   
Sbjct: 77  FQSMGLSYPVYKGVMKKGYKVPTPIQRKVVPVILDGKDVVAMARTGSGKTACFLIPMFEK 136

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 137 LKAHSAQTG-VRGLILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 195

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I S +P TRQTLL
Sbjct: 196 PDIIIATPGRLMHVAIEMNLKLRSVEYVVFDEADRLFEMGFAEQLQEIISRLPETRQTLL 255

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +  ++ +            K   LL  L    
Sbjct: 256 FSATLPKMLLEFARAGLTEPVLIRLDVDTKLSDQL-KLSFFNVRVEDKPAVLLHLLRCVV 314

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  +IF   K +   L   L+ QG     I+ ++DQ +R   L  F  G ++ ++ +
Sbjct: 315 KPQEQTVIFVATKHHAEYLRELLDMQGIPCSHIYSSLDQTARKINLGLFLHGKVRALLVT 374

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP + +V N++ P +A+ ++HR+GR  RAGR G A++ +A ++I ++  +  
Sbjct: 375 DVAARGIDIPMLDNVINYNFPPKAKLFLHRVGRVARAGRSGTAYSFIAPDEIPYVYDLHL 434

Query: 363 LIEKKVDWLNG 373
            + + +   N 
Sbjct: 435 FLGRPLKLANA 445


>gi|147898895|ref|NP_001088266.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Xenopus laevis]
 gi|83318280|gb|AAI08845.1| LOC495097 protein [Xenopus laevis]
          Length = 846

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 129/371 (34%), Positives = 201/371 (54%), Gaps = 2/371 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   V+  GY  PTPIQ K +P++L   DV  +A+TG+GKTA F++PM   
Sbjct: 77  FQSMGLSYPVYKGVMKKGYKVPTPIQRKVVPVILDGKDVVAMARTGSGKTACFLIPMFEK 136

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 137 LKAHSAQTG-VRGLILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 195

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I S +P TRQTLL
Sbjct: 196 PDIIIATPGRLMHVAIEMNLKLRSVEYVVFDEADRLFEMGFAEQLQEIISRLPETRQTLL 255

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +  ++ +            K   LL  L    
Sbjct: 256 FSATLPKMLLEFARAGLTEPVLIRLDVDTKLSDQL-KLSFFNVRVEDKPAVLLHLLRCVV 314

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  +IF   K +   L   L+ QG     I+ ++DQ +R   L  F  G ++ ++ +
Sbjct: 315 KPQEQTVIFVATKHHAEYLRELLDMQGIPCSHIYSSLDQTARKINLGLFLHGKVRALLVT 374

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP + +V N++ P +A+ ++HR+GR  RAGR G A++ +A ++I ++  +  
Sbjct: 375 DVAARGIDIPMLDNVINYNFPPKAKLFLHRVGRVARAGRSGTAYSFIAPDEIPYVYDLHL 434

Query: 363 LIEKKVDWLNG 373
            + + +   N 
Sbjct: 435 FLGRPLKLANA 445


>gi|62740160|gb|AAH94142.1| LOC495097 protein [Xenopus laevis]
          Length = 693

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 129/371 (34%), Positives = 201/371 (54%), Gaps = 2/371 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   V+  GY  PTPIQ K +P++L   DV  +A+TG+GKTA F++PM   
Sbjct: 77  FQSMGLSYPVYKGVMKKGYKVPTPIQRKVVPVILDGKDVVAMARTGSGKTACFLIPMFEK 136

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 137 LKAHSAQTG-VRGLILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 195

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I S +P TRQTLL
Sbjct: 196 PDIIIATPGRLMHVAIEMNLKLRSVEYVVFDEADRLFEMGFAEQLQEIISRLPETRQTLL 255

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +  ++ +            K   LL  L    
Sbjct: 256 FSATLPKMLLEFARAGLTEPVLIRLDVDTKLSDQL-KLSFFNVRVEDKPAVLLHLLRCVV 314

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  +IF   K +   L   L+ QG     I+ ++DQ +R   L  F  G ++ ++ +
Sbjct: 315 KPQEQTVIFVATKHHAEYLRELLDMQGIPCSHIYSSLDQTARKINLGLFLHGKVRALLVT 374

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP + +V N++ P +A+ ++HR+GR  RAGR G A++ +A ++I ++  +  
Sbjct: 375 DVAARGIDIPMLDNVINYNFPPKAKLFLHRVGRVARAGRSGTAYSFIAPDEIPYVYDLHL 434

Query: 363 LIEKKVDWLNG 373
            + + +   N 
Sbjct: 435 FLGRPLKLANA 445


>gi|116628386|ref|YP_821005.1| superfamily II DNA/RNA helicase [Streptococcus thermophilus LMD-9]
 gi|116101663|gb|ABJ66809.1| Superfamily II DNA and RNA helicase [Streptococcus thermophilus
           LMD-9]
          Length = 447

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 183/366 (50%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ +  + +PTP+Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDFNFKDYIQEALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L      V++    I  P+RELA Q+  + ++  K+ +  + ++      + Q +  +
Sbjct: 61  EKLNPESRDVQVV---ITAPSRELATQIYQSTKQIAKHSDTEIRVVNYVGGTDKQRQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D F  G L ++     V+DEAD  +DMGF+  +  I +  P  
Sbjct: 118 LKVAQPHIVIGTPGRIYDLFKSGDLAIHKAHTFVVDEADMTMDMGFLATVDKIAASFPKE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEQIKTSTVIADTI---DNWLVSTKGRNKNGQIL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K+   +L   L   G  V  IHG I  R R +I++  K+   +
Sbjct: 235 EMLKGMQPYLAMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLEFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 RELEKM 360


>gi|311257030|ref|XP_003126917.1| PREDICTED: ATP-dependent RNA helicase DDX19A-like isoform 1 [Sus
           scrofa]
          Length = 478

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 104/382 (27%), Positives = 177/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 92  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 151

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      R P+ L L PT ELA Q     E+ GK +               + +K+
Sbjct: 152 LSRVEPAE---RYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKI 208

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 209 SEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 268

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V    +  K        L
Sbjct: 269 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNRDEK--FQALCNL 326

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 327 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGKEKVL 386

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 387 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 446

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 447 SMNILNRIQEHFNKKIERLDTD 468


>gi|254482117|ref|ZP_05095359.1| DbpA RNA binding domain family protein [marine gamma
           proteobacterium HTCC2148]
 gi|214037807|gb|EEB78472.1| DbpA RNA binding domain family protein [marine gamma
           proteobacterium HTCC2148]
          Length = 459

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 139/405 (34%), Positives = 220/405 (54%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L    +  ++  GY   T IQ  ++PL  +  D+   A+TG+GKTA+F LP+L  
Sbjct: 6   FSSLPLPKDQLDNLISLGYASMTGIQAASLPLAFKGKDLIAQAKTGSGKTAAFSLPLLDK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLER 121
           L     R    + L+L PTRELA QV+    +  +       + + G      Q   LE 
Sbjct: 66  LNP---RDFGTQALVLCPTRELATQVSGEIRRLARYRQNIKVVTLCGGQSIGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI DH  +  L +  ++ LV+DEADRML+MGF+  I +I    P  RQTL
Sbjct: 123 GAHIVVGTPGRISDHLRKKTLNLTRVDTLVLDEADRMLEMGFVEDISSIIEQTPAARQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D+++ +S  F + P+RI V T  +  +  +  FV   +        L     +
Sbjct: 183 LFSATYPDDIEALSARFQKQPERISVETMHNDQQIDQQFFVCQKSARLDGLVTLL----N 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  ++FCN K+ V ++   L++ G    A+HG+++QR R ++L  F++ +  ++VA
Sbjct: 239 HFAPQTAVVFCNTKQLVRDVTAHLDESGIRALALHGDMEQRDRDQVLIQFRQQSCSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V NF++P   E Y+HR+GRTGRAG+ G A +L A  +   ++ I 
Sbjct: 299 TDVAARGLDIDDLPVVVNFELPRETEVYVHRVGRTGRAGKAGLALSLFADSEQYKLEKIR 358

Query: 362 KLIEKKVDWLNGDLSSL------NPPLEKIDIAQHNHARKNNPIP 400
           +L++++ +    D  S+       PP   + IA     RK+   P
Sbjct: 359 QLLQQEPETKPIDSISVRGERMPPPPYATLCIA---GGRKHKVRP 400


>gi|170760702|ref|YP_001787100.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169407691|gb|ACA56102.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 421

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 115/416 (27%), Positives = 214/416 (51%), Gaps = 14/416 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L+PK+V  +       PT IQ + IPL ++  D+ G ++TGTGKT +++LP+  
Sbjct: 4   SFDTLNLNPKLVQGLKKLNINIPTEIQAEAIPLAMENKDIIGQSETGTGKTLAYLLPIFE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNKKL 119
            +   +  ++     IL PT ELA Q+ +  +    N N+      +IG    + Q +KL
Sbjct: 64  KITTEKREMQAI---ILAPTHELAMQINNEIKNISSNSNIDVKSMAIIGEANIKRQIEKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +++ +PGRIL+   + K+  + ++ +VIDE D++LD   +  ++ +       RQ
Sbjct: 121 KEKPHIIVGSPGRILELIKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT+T+    ++++ +++ + ++V   ++  E I+H ++       ++   + + L
Sbjct: 181 LMLFSATITESTLNIAKDLMKDSEVVKVKEKNTVNENIKHLYITGEH---RERIEILRKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    K  I+F N+ + +      L+        I+G  ++  R K L +F+ G +Q++
Sbjct: 238 IAATNPKRAIVFINRNEEIELTTLKLQYHKIKAYGIYGAAEKEQRKKALEDFRSGKVQIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V+SDL+ARGLD+ DV H+FN D+P   + Y+HR+GRTGRA + G A +++ +++   I  
Sbjct: 298 VSSDLSARGLDVKDVTHIFNLDLPENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRK 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            EK     ++       +L      I       ++  +     S   D  KK  SS
Sbjct: 358 YEKEFNINIEEKKIYKGTL------ISSKGERSSQPKSKNRSTSVHIDNNKKKRSS 407


>gi|291453994|ref|ZP_06593384.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291356943|gb|EFE83845.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
          Length = 469

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 140/413 (33%), Positives = 219/413 (53%), Gaps = 20/413 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+  +   A+   G   P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L 
Sbjct: 3   TFRELGILSETAEALEAVGITNPFPIQELTLPVALSGTDVIGQAKTGTGKTLGFGLPLLE 62

Query: 62  ILE----------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
            +           K       P+ L++ PTREL  QV ++    GK  ++ V  + GG  
Sbjct: 63  RVTVAADVEAGRAKPEQLTTAPQALVVVPTRELCQQVTNDLLTAGKVRDVRVLAIYGGRA 122

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q + L +G DV++ TPGR+LD   + KL + +++ LV+DEAD MLD+GF+P ++ I 
Sbjct: 123 YEPQVEALNKGVDVIVGTPGRLLDLAGQRKLDLGHVKALVLDEADEMLDLGFLPDVERIV 182

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +++P  RQT+LFSATM   +  ++  ++  P  I   +P     T+ +     +  +S  
Sbjct: 183 TMLPAKRQTMLFSATMPGAVIGLARRYMTQPTHIRATSPDDEGATVANIAQHVFRAHSMD 242

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L   +   +     +IFC  K+   ++   L+++GF+  A+HG++ Q +R + L  F
Sbjct: 243 KPELVSRILQAEGRGLAMIFCRTKRTAADIAEQLQRRGFASGAVHGDLGQGAREQALRAF 302

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAGR G A TLV  
Sbjct: 303 RNGKVDVLVCTDVAARGIDVEGVTHVINYQTPEDEKTYLHRIGRTGRAGRAGIAITLVDW 362

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           +DI     I K +E           + N P+E    + H +     P   K T
Sbjct: 363 DDIPRWQLINKALEL----------TFNDPVETYSTSPHLYEELRIPEGTKGT 405


>gi|299829298|ref|NP_001005895.2| ATP-dependent RNA helicase DDX19B [Rattus norvegicus]
          Length = 479

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 176/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL M
Sbjct: 93  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 152

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E        P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 153 LSQVEPAN---NHPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKV 209

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 210 GEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 269

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V    +  K        L
Sbjct: 270 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREEK--FQALCNL 327

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 328 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 387

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 388 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 448 SMNILNRIQEHFNKKIERLDTD 469


>gi|195434048|ref|XP_002065015.1| GK14902 [Drosophila willistoni]
 gi|194161100|gb|EDW76001.1| GK14902 [Drosophila willistoni]
          Length = 424

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 99/394 (25%), Positives = 171/394 (43%), Gaps = 14/394 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 43  FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE           +                               G    + +       
Sbjct: 103 LEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGLAIQKDEETLKSGT 162

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM-GFIPYIQNITSLVPFTRQTL 181
             +++ TPGRIL      KL + +++  V+DE D+ML+       +Q I    P  +Q +
Sbjct: 163 PHIVVGTPGRILALIRNKKLNLKHLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHGKQVM 222

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT++ +++ V + F+Q+P  + V+  +               +  K   L +     
Sbjct: 223 MFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYNNLKENEKNKKLFEL--LD 280

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  +IF    +  V L   L +Q F    IH  + Q  R+     FK+   +++VA
Sbjct: 281 VLEFNQVVIFVKSVQRCVALAQLLTEQNFPAIGIHRGMSQEERLNRYQQFKDFQKRILVA 340

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAI 360
           ++L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ +
Sbjct: 341 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEV 400

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           +   +  +  L           E+ID++ +   R
Sbjct: 401 QDRFDVNITELP----------EEIDLSSYIEGR 424


>gi|52551335|gb|AAU84666.1| zinc responsive protein Zd10A [Rattus norvegicus]
          Length = 482

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 176/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL M
Sbjct: 96  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 155

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E        P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 156 LSQVEPAN---NHPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKV 212

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 213 GEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 272

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V    +  K        L
Sbjct: 273 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREEK--FQALCNL 330

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 331 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 390

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 391 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 450

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 451 SMNILNRIQEHFNKKIERLDTD 472


>gi|4126714|dbj|BAA36710.1| DEAD-Box Protein [Ciona intestinalis]
          Length = 669

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 130/385 (33%), Positives = 205/385 (53%), Gaps = 11/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L   ++  V  AGY +PTP+Q  +IP++    D+   AQTG+GKTA+F+LP+LT
Sbjct: 214 TFEMANLQETILVNVQKAGYDRPTPVQKYSIPIINADRDLMACAQTGSGKTAAFLLPVLT 273

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                       +  + P+ +I+ PTREL  Q+     K+ ++  +   ++ GG     Q
Sbjct: 274 KLVESGVKSSEFSEKKTPQAIIIGPTRELVNQIFLEARKFSRSTIIHPVVVYGGTSVGYQ 333

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----IT 171
            + +++G DVLI TPGR++D  NRG + + N+  +++DEADRMLDMGF   I+       
Sbjct: 334 IRAVQKGCDVLIATPGRLMDFINRGLIGLENVRFIILDEADRMLDMGFESEIRKLVSLPG 393

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 R TL+FSAT  DE+QK++ +FL+             A +     V +     K+
Sbjct: 394 MPQKNNRHTLMFSATFPDEIQKLAHDFLREDFLFLTVGRVGGACSDVTQTVISVEWKDKR 453

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL+ +    +T    ++F   K+    L   L ++ F   +IHG+  Q+ R + L +F
Sbjct: 454 SKLLELIADVNETKSRTLVFVETKRGADFLACVLCQEDFPTTSIHGDRLQQDREQALRDF 513

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-A 350
           K     ++VA+ +AARGLDIP V HV N+D+P   + Y+HRIGRTGR G  G+A T    
Sbjct: 514 KLAVCPILVATSVAARGLDIPKVEHVINYDMPREIDEYVHRIGRTGRCGNLGRATTFFDN 573

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDL 375
           K+D     ++ K++ +    + G L
Sbjct: 574 KKDANLARSLVKILSEAQQEVPGWL 598


>gi|74096143|ref|NP_001027593.1| DEAD-Box Protein [Ciona intestinalis]
 gi|4126716|dbj|BAA36711.1| DEAD-Box Protein [Ciona intestinalis]
          Length = 659

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 130/385 (33%), Positives = 205/385 (53%), Gaps = 11/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L   ++  V  AGY +PTP+Q  +IP++    D+   AQTG+GKTA+F+LP+LT
Sbjct: 204 TFEMANLQETILVNVQKAGYDRPTPVQKYSIPIINADRDLMACAQTGSGKTAAFLLPVLT 263

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                       +  + P+ +I+ PTREL  Q+     K+ ++  +   ++ GG     Q
Sbjct: 264 KLVESGVKSSEFSEKKTPQAIIIGPTRELVNQIFLEARKFSRSTIIHPVVVYGGTSVGYQ 323

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----IT 171
            + +++G DVLI TPGR++D  NRG + + N+  +++DEADRMLDMGF   I+       
Sbjct: 324 IRAVQKGCDVLIATPGRLMDFINRGLIGLENVRFIILDEADRMLDMGFESEIRKLVSLPG 383

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 R TL+FSAT  DE+QK++ +FL+             A +     V +     K+
Sbjct: 384 MPQKNNRHTLMFSATFPDEIQKLAHDFLREDFLFLTVGRVGGACSDVTQTVISVEWKDKR 443

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL+ +    +T    ++F   K+    L   L ++ F   +IHG+  Q+ R + L +F
Sbjct: 444 SKLLELIADVNETKSRTLVFVETKRGADFLACVLCQEDFPTTSIHGDRLQQDREQALRDF 503

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-A 350
           K     ++VA+ +AARGLDIP V HV N+D+P   + Y+HRIGRTGR G  G+A T    
Sbjct: 504 KLAVCPILVATSVAARGLDIPKVEHVINYDMPREIDEYVHRIGRTGRCGNLGRATTFFDN 563

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDL 375
           K+D     ++ K++ +    + G L
Sbjct: 564 KKDANLARSLVKILSEAQQEVPGWL 588


>gi|89093138|ref|ZP_01166088.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
 gi|89082434|gb|EAR61656.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
          Length = 417

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 138/388 (35%), Positives = 208/388 (53%), Gaps = 8/388 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS      +   GY +PT IQ K IP VL+ HD+   A+TG+GKTA FVLP+L
Sbjct: 1   MSFVSLGLSDFFTSTLSSLGYKEPTAIQDKAIPAVLKGHDLIAAAETGSGKTAGFVLPLL 60

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYG--KNYNLTVALLIGGIPFEAQNK 117
             L    A        L+L PTRELA QV+ + ++Y       +    + GG     Q +
Sbjct: 61  EKLHSIPAPGNNLTHALVLVPTRELAVQVSQSVDRYSENCPRKIRSVAIYGGAAINPQMQ 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L +G D+++ TPGR+LD   +  L +  ++ LV+DEADRMLD+GF   + +I    P  
Sbjct: 121 SLSKGCDIVVATPGRLLDLMRKNALDLRGLKALVLDEADRMLDLGFADELDDILDQTPGN 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            QTLLFSAT  D++++++E  L+NP  I V   ++  + +    +              +
Sbjct: 181 VQTLLFSATFPDKVKELTEELLRNPVEISVKQEATLPDQLHQRAIEVDRNNRTML---LK 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  Q+  +  +IF   K+   N+   L + G     +HG++ Q+ R+  L +F +G  +
Sbjct: 238 HLIKQEKWQQLLIFVGSKRTANNIELKLYRSGIQSSTLHGDLTQKERLGALEDFSKGRCK 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+DLAARG+DIP +  V N+D+P    +Y+HR GRT RAG  G A + V  E   H 
Sbjct: 298 ILIATDLAARGIDIPSLPCVLNYDLPRATSDYVHRAGRTARAGEAGLAISFVDHESDAHF 357

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLE 383
             IEK I  K+  + + G   +  PP E
Sbjct: 358 KLIEKRIRMKIPREQIPGFERAQEPPKE 385


>gi|108798364|ref|YP_638561.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
 gi|119867461|ref|YP_937413.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           KMS]
 gi|108768783|gb|ABG07505.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
 gi|119693550|gb|ABL90623.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. KMS]
          Length = 507

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 149/430 (34%), Positives = 232/430 (53%), Gaps = 21/430 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LG+  ++  A+ + G  +P  IQ  T+P+ L   D+ G A+TG GKT +F +P+L
Sbjct: 10  MTFASLGVRDEICRALAEEGIHQPFAIQELTLPMALAGDDLIGQARTGMGKTYAFGVPLL 69

Query: 61  TILEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKN-----YNLTVALLIGGIPFE 113
             +     +    +PR LI+ PTREL  QV  +     K        L+V  + GG P+E
Sbjct: 70  QRVTTDTEKELSGIPRALIVVPTRELCLQVHSDLSLAAKYLTAGDRKLSVVSIYGGRPYE 129

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L +GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+ I   
Sbjct: 130 PQIESLRKGADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQ 189

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
            P TRQ +LFSATM D +  ++  F+  P  I   +P S+A        A  A    K  
Sbjct: 190 TPDTRQAMLFSATMPDPIITLARTFMNQPTHIRAESPQSSATHDTTAQFAYRAHALDKVE 249

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           ++ ++LQ++      I     K+    +   L ++GF V A+HG++ Q +R K L +F+ 
Sbjct: 250 MVSRILQAEGRGATMIFT-RTKRTAQKVADELAERGFKVGAVHGDLGQGAREKALKSFRT 308

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G + ++VA+D+AARG+DI D+ HV NF +P   + Y+HRIGRTGRAG+ G A TLV  ++
Sbjct: 309 GEVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGVAVTLVDWDE 368

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG-FDRRKKN 412
           +     I+K +            +   P E    + H +  +   IP ++ G     K  
Sbjct: 369 LPRWSMIDKALGL----------NTPDPAETYSSSPHLY--EELGIPTEAGGSVGEPKAR 416

Query: 413 YSSQKSHIPL 422
            ++++S  P 
Sbjct: 417 AAAKRSERPA 426


>gi|260948130|ref|XP_002618362.1| hypothetical protein CLUG_01821 [Clavispora lusitaniae ATCC 42720]
 gi|238848234|gb|EEQ37698.1| hypothetical protein CLUG_01821 [Clavispora lusitaniae ATCC 42720]
          Length = 560

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 125/455 (27%), Positives = 207/455 (45%), Gaps = 19/455 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF + G S   + A+   G+ K T +Q KTIP +L   DV G A+TG+GKT +F+LP + 
Sbjct: 97  DFEEAGFSEPTLKAIRQMGFKKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLLPAIE 156

Query: 62  ILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   + + R     +I+ PTRELA Q+     +  +++  T  ++IGG     +  KL 
Sbjct: 157 LLYSLKFKPRNGTGVVIISPTRELALQIFGVARELMEHHTQTFGIVIGGANRRQEADKLV 216

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G ++LI TPGR +    N    +  N++ LVIDEADR+L++GF   ++ I  ++P   +
Sbjct: 217 KGVNLLIATPGRLLDHLQNTQGFVFKNLKALVIDEADRILEIGFEEEMKQIIKILPNEDR 276

Query: 180 TLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             + FSAT T +++ ++   L+         P S A T +          S K  LL   
Sbjct: 277 QSMLFSATQTTKVEDLARMSLRPGPLYINVVPESAASTADGLEQGYVVCESDKRFLLLFS 336

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +    V      L      V  +HG   Q  R      F      +
Sbjct: 337 FLKRNAKKKIIVFLSSCNCVKYFGELLNYIDLPVLDLHGKQKQAKRTNTFFEFCNAKQGI 396

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R  +  GK+   +   ++  +
Sbjct: 397 LICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELGFL 456

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             ++          N  L+    P  KI   Q    +         + F   +      +
Sbjct: 457 RYLKAA--------NVPLNEYEFPANKIANVQSQLTK------LIKSNFWLHQSAKDGYR 502

Query: 418 SHIPLKESEKISKLQQ-DIQENDADSLGFRGNMPA 451
           S++    S  +  + Q D  +    +  F  ++P 
Sbjct: 503 SYLQAYASHHLKTVYQIDKLDLVKVAKSFGFDVPP 537


>gi|307109230|gb|EFN57468.1| hypothetical protein CHLNCDRAFT_56077 [Chlorella variabilis]
          Length = 390

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 96/376 (25%), Positives = 162/376 (43%), Gaps = 31/376 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L  +++  + + G+  P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P+L 
Sbjct: 41  SFEDYFLKRELLMGIYEKGFENPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLE 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+    L+L PTRELA Q +   ++ GK+  + V +  GG        +L  
Sbjct: 101 KVDTSKNEVQ---ALLLVPTRELALQTSQVAKELGKHMAVEVMVSTGGTSLRDDIVRLGA 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGRILD   +G   ++   + V+DEAD++L   F P ++ +   +   RQ  
Sbjct: 158 TVHVIVATPGRILDLAQKGVAKLDKCAVCVMDEADKLLSPEFQPVVEQLIGFLSQNRQIC 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    +++    F     R           T++           ++       L +
Sbjct: 218 LYSATFPVTVKQ----FKDKFLRKPYIINLMEELTLKGVSQYYAFVEERQKVHCLNTLFA 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + ++   IIFCN    V             V    G    R               +   
Sbjct: 274 KLSINQSIIFCNSVNRV------------VVARWMGGDTARMPPAPHIAPPNPHPHI--- 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
                       V  V NFD P  +E Y+HR+GR+GR G  G A  L+  ED  ++  IE
Sbjct: 319 ---------HQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGIAINLITYEDRFNLYKIE 369

Query: 362 KLIEKKVDWLNGDLSS 377
           + +  ++  +   +  
Sbjct: 370 QELGTEIKPIPPVIEK 385


>gi|209881795|ref|XP_002142335.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209557941|gb|EEA07986.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 498

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 100/371 (26%), Positives = 165/371 (44%), Gaps = 10/371 (2%)

Query: 2   DFAD---LGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F D    G+   V+  + D   Y KPTP+Q + IPL+L   D+   + TG+GKT S++L
Sbjct: 103 SFEDIMKCGVPSWVIDNIRDILKYKKPTPVQAQVIPLILSGSDILAQSPTGSGKTLSYLL 162

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           P+L  L          ++LIL PTRELA Q+    +                   + + +
Sbjct: 163 PILGKL---TNEKTYCKSLILSPTRELAQQIVREVKVLLDTRAKKYRCRYICGKVKKEQE 219

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              +  D+ + TP R  +    G + +     +V+DE D++LDMGF P I  I +     
Sbjct: 220 SRTKRLDIAVSTPFRFAEICKSGIMNLKECSFIVLDEVDKLLDMGFSPQIDEIIAHSNVI 279

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK---KCAL 234
               +     +  L    ++  ++  +  +                     +K   K   
Sbjct: 280 SNGKVQVVAFSATLPNNVKDLAESIMKYPIEVTVGHRLAASKTIKQELICVTKESGKLES 339

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            +QL++        ++F N K+N   L   +      V  IH ++ +  R  I+  F+ G
Sbjct: 340 FRQLIKQGRINLPVLLFTNSKENAQKLFSKIVFDNLLVDMIHSDMAKTKRDNIVKKFRTG 399

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            I +++ +DL ARG+D  +V  V N+D P  +  YIHRIGR+GRAGR G A T     D+
Sbjct: 400 QIWVLICTDLIARGVDFKNVATVINYDFPQTSTIYIHRIGRSGRAGRLGHALTFFTLNDL 459

Query: 355 KHIDAIEKLIE 365
             +  I K+++
Sbjct: 460 PKLKYIAKVMK 470


>gi|195034694|ref|XP_001988957.1| GH11448 [Drosophila grimshawi]
 gi|193904957|gb|EDW03824.1| GH11448 [Drosophila grimshawi]
          Length = 424

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 99/394 (25%), Positives = 171/394 (43%), Gaps = 14/394 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 43  FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE           +                               G    + +       
Sbjct: 103 LEPADNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGLAIQKDEETLKNGT 162

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM-GFIPYIQNITSLVPFTRQTL 181
             +++ TPGRIL      KL + +++  V+DE D+ML+       +Q I    P  +Q +
Sbjct: 163 PHIVVGTPGRILALIRNKKLNLKHLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHGKQVM 222

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT++ E++ V + F+Q+P  + V+  +               +  K   L +     
Sbjct: 223 MFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFEL--LD 280

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  +IF    +    L   L +Q F    IH  ++Q  R+     FK+   +++VA
Sbjct: 281 VLEFNQVVIFVKSVQRCTALAQLLTEQNFPAIGIHRGMNQDDRLNRYQQFKDFQKRILVA 340

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAI 360
           ++L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ +
Sbjct: 341 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEV 400

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           +   +  +  L           E+ID++ +   R
Sbjct: 401 QDRFDVNISELP----------EEIDLSTYIEGR 424


>gi|114647102|ref|XP_001152218.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 4 [Pan
           troglodytes]
          Length = 808

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 129/366 (35%), Positives = 196/366 (53%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 98  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 158 LKTHSAQTGA-RALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I + +P   QT+L
Sbjct: 217 PDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVL 276

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +   E ++  F     + +K   LL  L    
Sbjct: 277 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSF-FLVREDTKAAVLLHLLRNMV 335

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K +   L   L  Q  S   I+  +D  +R   L+ F  G    ++ +
Sbjct: 336 RPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVT 395

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA ++I ++  +  
Sbjct: 396 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHL 455

Query: 363 LIEKKV 368
            + + +
Sbjct: 456 FLGRSL 461


>gi|114647098|ref|XP_001152159.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 3 [Pan
           troglodytes]
          Length = 916

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 129/366 (35%), Positives = 196/366 (53%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 98  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 158 LKTHSAQTGA-RALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I + +P   QT+L
Sbjct: 217 PDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVL 276

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +   E ++  F     + +K   LL  L    
Sbjct: 277 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSF-FLVREDTKAAVLLHLLRNMV 335

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K +   L   L  Q  S   I+  +D  +R   L+ F  G    ++ +
Sbjct: 336 RPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVT 395

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA ++I ++  +  
Sbjct: 396 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHL 455

Query: 363 LIEKKV 368
            + + +
Sbjct: 456 FLGRSL 461


>gi|114647106|ref|XP_001152033.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1 [Pan
           troglodytes]
          Length = 735

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 129/366 (35%), Positives = 196/366 (53%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 98  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 158 LKTHSAQTGA-RALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I + +P   QT+L
Sbjct: 217 PDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVL 276

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +   E ++  F     + +K   LL  L    
Sbjct: 277 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSF-FLVREDTKAAVLLHLLRNMV 335

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K +   L   L  Q  S   I+  +D  +R   L+ F  G    ++ +
Sbjct: 336 RPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVT 395

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA ++I ++  +  
Sbjct: 396 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHL 455

Query: 363 LIEKKV 368
            + + +
Sbjct: 456 FLGRSL 461


>gi|114647100|ref|XP_001152281.1| PREDICTED: ATP-dependent RNA helicase DDX54 isoform 5 [Pan
           troglodytes]
          Length = 884

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 129/366 (35%), Positives = 196/366 (53%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 98  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 158 LKTHSAQTGA-RALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I + +P   QT+L
Sbjct: 217 PDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVL 276

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +   E ++  F     + +K   LL  L    
Sbjct: 277 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSF-FLVREDTKAAVLLHLLRNMV 335

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K +   L   L  Q  S   I+  +D  +R   L+ F  G    ++ +
Sbjct: 336 RPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVT 395

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA ++I ++  +  
Sbjct: 396 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHL 455

Query: 363 LIEKKV 368
            + + +
Sbjct: 456 FLGRSL 461


>gi|77628154|ref|NP_001005381.2| zinc responsive protein ZD10B [Rattus norvegicus]
 gi|51260031|gb|AAH79094.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a [Rattus norvegicus]
          Length = 478

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 104/382 (27%), Positives = 177/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 92  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 151

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      R P+ L L PT ELA Q     E+ GK +               + +K+
Sbjct: 152 LSRVEPAD---RHPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKV 208

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 209 GEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 268

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V    +  K        L
Sbjct: 269 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREEK--FQALCNL 326

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 327 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 386

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 387 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 446

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 447 SMNILNRIQEHFNKKIERLDTD 468


>gi|95930869|ref|ZP_01313600.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
 gi|95133111|gb|EAT14779.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
          Length = 463

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 135/403 (33%), Positives = 221/403 (54%), Gaps = 9/403 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ L L P ++  +   GY   TPIQ +++P +L   DV G  +TG+GKTA+F L +L 
Sbjct: 5   DFSTLKLQPALLKNLQSIGYAHMTPIQAQSLPHILAGRDVIGQGKTGSGKTAAFGLGLLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L     +    + L+L PTRELA QVA    K  +  +    L +  G+PF  Q   LE
Sbjct: 65  KL---NVKRFHVQALVLCPTRELADQVAKEIRKLARTIHNIKVLTLCGGMPFGPQLGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRI +H  +G L ++N+ +LV+DEADRML+MGF   +  I    P TRQT
Sbjct: 122 HGAHIIVGTPGRIEEHVRKGALKLDNLTLLVLDEADRMLEMGFQEALDAIIDQTPQTRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT   +++ ++   ++ P  ++V     +A   +H +        +      + L 
Sbjct: 182 LLFSATFPRQIESIAGRVMKTPVMVQVEATHDSAVITQHFYEVADDTADR--QQALRRLL 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + ++FCN K++  ++   L + GFS  A+HG+++QR R + L  F  G+  ++V
Sbjct: 240 RYYQPTSAVVFCNTKQDTRDVADDLREHGFSALALHGDLEQRERDQSLVRFSNGSASILV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  VFN+ +    E ++HRIGRTGRAG HG A +L + ++   ++ +
Sbjct: 300 ATDVAARGLDIEALDAVFNYHIARDTEVHVHRIGRTGRAGSHGMACSLYSAKEHFKVERL 359

Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEK-IDIAQHNHARKNNPIP 400
            K +++ +  + L        P ++  +   Q +  ++    P
Sbjct: 360 AKFLDQSLTGEPLPEPSDETQPVMQPAMATLQIDSGKRQKIRP 402


>gi|281490952|ref|YP_003352932.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis
           subsp. lactis KF147]
 gi|281374710|gb|ADA64230.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus
           lactis subsp. lactis KF147]
          Length = 446

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 134/455 (29%), Positives = 212/455 (46%), Gaps = 19/455 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +   + +  + KPT +Q   IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTDFNFKDYINQTLENIKFEKPTEVQENLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVAD-NFEKYGKNYNLTVALLIGGIPFEAQNKK- 118
             ++     V+     I  P+RELA Q+     E    N  L V+  +GG     Q KK 
Sbjct: 61  QKIDTDLDEVQAV---ITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKL 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 V+I TPGRI D  N   L+++     V+DEAD  LDMGF+  +  I S      
Sbjct: 118 ESSQPHVVIGTPGRIHDLINSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRV 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+  +LQ   + +L NP   ++   +  ++TIE+  V+T      +  L    
Sbjct: 178 QMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTK 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +       +IF N K  V ++ H L   G  V  IHG++  R R +I+++ K    Q 
Sbjct: 238 ATNPYM---AMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQY 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI  V H+ N ++P     ++HR+GR+GR G  G A TL +  D   I 
Sbjct: 295 VVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIR 354

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY--SSQ 416
            IEK+    V +    +             +    +K + I  K+ G  ++ K +     
Sbjct: 355 EIEKM---GVTFQPKAIKDGEIVDSYDRDRREKRTKKQDEISTKTIGALKKGKKHVKPGY 411

Query: 417 KSHIPL------KESEKISKLQQDIQENDADSLGF 445
           K  I        K+  +  + +   +  D+    F
Sbjct: 412 KRAIKWQIEEDNKKKRRAERNKNARKTRDSRKQSF 446


>gi|195118098|ref|XP_002003577.1| GI21901 [Drosophila mojavensis]
 gi|195388486|ref|XP_002052911.1| GJ17817 [Drosophila virilis]
 gi|193914152|gb|EDW13019.1| GI21901 [Drosophila mojavensis]
 gi|194149368|gb|EDW65066.1| GJ17817 [Drosophila virilis]
          Length = 424

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 100/394 (25%), Positives = 172/394 (43%), Gaps = 14/394 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 43  FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE           +                               G    + +       
Sbjct: 103 LEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGLAIQKDEETLKNGT 162

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM-GFIPYIQNITSLVPFTRQTL 181
             +++ TPGRIL      KL + +++  V+DE D+ML+       +Q I    P  +Q +
Sbjct: 163 PHIVVGTPGRILALIRNKKLNLKHLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHGKQVM 222

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT++ E++ V + F+Q+P  + V+  +               +  K   L +     
Sbjct: 223 MFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFEL--LD 280

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  +IF    +  V L   L +Q F    IH  ++Q  R+     FK+   +++VA
Sbjct: 281 VLEFNQVVIFVKSVQRCVALAQLLTEQNFPAIGIHRGMNQDERLNRYQQFKDFQKRILVA 340

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAI 360
           ++L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ +
Sbjct: 341 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEV 400

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           +   +  +  L           E+ID++ +   R
Sbjct: 401 QDRFDVNISELP----------EEIDLSTYIEGR 424


>gi|328866692|gb|EGG15075.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 845

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 132/430 (30%), Positives = 216/430 (50%), Gaps = 22/430 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   +   +  A Y +PTP+Q   +P++++  D+   AQTG+GKTA+F+ P+++
Sbjct: 374 SFMDVDLGDVLFRNIQYAKYTRPTPVQKSALPIIMKERDLMACAQTGSGKTAAFLFPIIS 433

Query: 62  I------------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                           G  R   PR L+L PTRELA Q+ +   K+     +   ++ GG
Sbjct: 434 SILLDGAPEPPAAYRPGVPRPVHPRALVLAPTRELAQQIYEESVKFSYGSPVASVVVYGG 493

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q  +L+RG D+L+ T GR++D  +RG++ ++ ++ LV+DEADRMLDMGF P I+ 
Sbjct: 494 AEISQQIAELDRGCDILVATTGRLVDLLSRGRVSLSQVKFLVLDEADRMLDMGFEPQIRQ 553

Query: 170 ITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I               +FSAT    +Q ++ +FL N   ++V    +T    +       
Sbjct: 554 IIQDHDLPCNKDRQTLMFSATFPKPIQNLASDFLDNYIFLKVGVIGTTQNITQRIE--YV 611

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
               K   LL  L     +    +IF   K+   +L   L  +G+    IHG++ Q  R 
Sbjct: 612 PDDEKNSTLLDFLETLTKSQALTLIFVETKRLCDSLTVFLNSRGYPTTCIHGDLSQYERE 671

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L++F+ G    +VA+D+A+RGL IP+V HV N+D+PN    Y+HRIGRTGRAG+ G A
Sbjct: 672 SALNSFRSGNTPFLVATDVASRGLHIPNVMHVINYDLPNDVHVYVHRIGRTGRAGKKGNA 731

Query: 346 FTLVAKEDIKHIDAIEKLIEKK----VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            +   +++      + +L++K      DW +  ++S  P        ++N+         
Sbjct: 732 ISFFNEKNKPIAQELFQLMKKSNQEVPDWFDRSVNSFRPSKGGPPQKRYNNNDNFGRHYN 791

Query: 402 KSTGFDRRKK 411
            + G DR  +
Sbjct: 792 NNRGGDREDR 801


>gi|291000284|ref|XP_002682709.1| dead box-containing ATP-dependent RNA helicase [Naegleria gruberi]
 gi|284096337|gb|EFC49965.1| dead box-containing ATP-dependent RNA helicase [Naegleria gruberi]
          Length = 955

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 130/449 (28%), Positives = 217/449 (48%), Gaps = 19/449 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+S  +   +       PT IQ K IP  L   +V G++QTG+GKTA+F LP++ 
Sbjct: 137 SFTDLGISSWLEEHLSKLQINMPTVIQEKCIPPTLAGKNVIGMSQTGSGKTAAFALPIIQ 196

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L K    +     LI+ P RELA Q+  +FE    +  + VALL+GG+ +  Q   L+ 
Sbjct: 197 NLAKDMYGIYA---LIITPARELAIQIKQHFEILAGDLPIRVALLVGGMDYLKQAHLLDS 253

Query: 122 GADVLICTPGRILDHFNRGKL--LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              +++ TPGRI D             I+ LV DEADR+  M +   +  I S+    RQ
Sbjct: 254 SPHIVVGTPGRIEDAIRTFNNDGYFKKIKYLVFDEADRIFSMDYSLDLDRILSVSNPKRQ 313

Query: 180 TLLFSATMTDELQKVSENFLQNPKR---------IEVNTPSSTAETIEHCFVATYAQYSK 230
           TLL+SATM ++++K+++  + N  +            +                +     
Sbjct: 314 TLLYSATMNNQVKKLAKMAMSNSGKTKEEREQSLYIYDACKLFQLADNLSQYYLFMPEHV 373

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K A   QL+ S       I+F +       +  +    G S  ++H +  Q+ R  +L  
Sbjct: 374 KDAYFVQLINSLPDNSISIVFFSDITQCELMNQTCRLLGISCDSLHASKSQKERFAVLKY 433

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F++  ++ +  +D+A RGLDIP VG+V N+D+P+  + Y+HR+GRT RAGR G   +L++
Sbjct: 434 FRKRRLKFLFCTDVANRGLDIPAVGYVINYDLPDTTDKYVHRVGRTARAGRLGVCISLIS 493

Query: 351 KEDIKHIDAIEKLIEKKVDWLNG-DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF-DR 408
           + ++K I AIE   + ++      D          + +A+    +    I    +GF DR
Sbjct: 494 QFEVKRIKAIESDTDVQMAKYEPFDEEQAESEEHLLSVAEQ---KCKAKITLLDSGFYDR 550

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQE 437
            +K  S Q+    L++  +I   ++ + +
Sbjct: 551 FEKVKSKQQLTADLRKQAQIFFEKRSMDQ 579


>gi|295399200|ref|ZP_06809182.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110198|ref|YP_003988514.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1]
 gi|294978666|gb|EFG54262.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215299|gb|ADP73903.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1]
          Length = 435

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 134/439 (30%), Positives = 217/439 (49%), Gaps = 16/439 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++ A+ +  + KPT IQ + IP+ L+     G +QTGTGKT +++LP++  
Sbjct: 6   FERFSFQPFIIEAIKELRFYKPTEIQERIIPIALRGKSAIGQSQTGTGKTHAYLLPIIEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVAD----NFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           ++  R  V+     I  PTRELA Q+        +    +  +T    IGG   +   +K
Sbjct: 66  IDPDRKAVQAV---ITAPTRELATQIYHEILKITKFCPSDRQITARCFIGGTDKQKAIEK 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+    +++ TPGRI D      LL+     LV+DEAD MLDMGFI  +  I + +P   
Sbjct: 123 LKTQPHIVVGTPGRINDLIREQALLVRTANTLVVDEADLMLDMGFIVDVDQIAARMPKEL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+   + +++NP+ + V      AE IEH         S+    L   
Sbjct: 183 QMLVFSATIPEKLKPFLKKYMENPEYVHVAPKQVAAEKIEH---VLVPLRSRDKVKLLHE 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +         I+F N KK    +   L ++G  V  +HG++  R R K++   ++   Q 
Sbjct: 240 MLLAYNPYLAIVFTNTKKMADEVADKLIEKGMKVGILHGDLSPRERKKMMKQIRDLEFQY 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N+++P   + YIHR GRT RAG  G A T+    D    D
Sbjct: 300 IVATDLAARGIDIEGVSHVINYELPKDLQFYIHRAGRTARAGYTGMAATIYEPSDQ---D 356

Query: 359 AIEKLIEKKVDWLNGDL---SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           AI KL +  +++L+ DL     ++ P       +     +   +  K     + K  Y  
Sbjct: 357 AITKLEKMGIEFLHRDLIRGEWVDLPPWNRRSKREKQGGEIAQLLAKMKKAKQVKPGYKK 416

Query: 416 QKSHIPLKESEKISKLQQD 434
           +      K+ +++ +L++ 
Sbjct: 417 KLLAEMEKQKKRLRRLKKQ 435


>gi|118401955|ref|XP_001033297.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89287645|gb|EAR85634.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila SB210]
          Length = 1357

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 131/459 (28%), Positives = 226/459 (49%), Gaps = 24/459 (5%)

Query: 2    DFADLGLSPKVVCA-VLDAGYVKPTPIQIKTIPLVLQRHDVC-----------GIAQTGT 49
             +   GLS +++   +    Y KP PIQ +++P+++   D+             IA+TG+
Sbjct: 696  SWLQSGLSDRILEVLIEKKKYDKPFPIQCQSLPVIMSGRDMIDFLREQAKSKDSIAETGS 755

Query: 50   GKTASFVLPMLTIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
            GKT +++LPM+  +  ++       P  LIL PTRELA Q+    + + K Y   +  + 
Sbjct: 756  GKTLAYLLPMIRHVSAQRPLQEGDGPIGLILVPTRELATQIYLEAKPFLKAYKYEIVAVF 815

Query: 108  GGIPFEAQNKKLERGADVLICTPGRILD---HFNRGKLLMNNIEILVIDEADRMLDMGFI 164
            GG   + Q  +L+RG ++++ TPGR++D     N     +  I ++VIDEADRM D+GF 
Sbjct: 816  GGTGIKGQLSELKRGCEIVVATPGRLIDVLTTSNGKITNLKRITMVVIDEADRMFDLGFE 875

Query: 165  PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
            P I  I +     +QT+LFSAT    ++ +++  +++     V   +          +  
Sbjct: 876  PQIAKILATTRPDKQTVLFSATFPKNVENLAKKLMRHKPVEVV-VGARGQACTNITQLIE 934

Query: 225  YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                S +   L +LL         IIF +++  V  L   L  + +    +H  +D   R
Sbjct: 935  IRDESTRLFRLLELLGIYTEQGQVIIFVDKQIEVDFLYQELRSRYYIPTILHAGVDAEDR 994

Query: 285  MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            +  L +F++G  ++++A+ L++RGLD+ +V  V N+  PN  E+YIHRIGRTGRAG  G 
Sbjct: 995  VNNLLDFRKGIYKILIATSLSSRGLDVKNVVLVVNYKCPNHIEDYIHRIGRTGRAGNKGT 1054

Query: 345  AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
            A T +  E+ K+   + K +++    +  +L  +    +K           N  +  K  
Sbjct: 1055 AVTFIGPEEDKYSLDLIKALKRSDQKVPEELLRMGEEFKKKVKMGEAKIYNNANMQGKGF 1114

Query: 405  GFDRRKKNYSSQKSHIPLKESEKISKLQQ--DIQENDAD 441
             FD  +++  +Q  +    E +K   LQ   DI+E D D
Sbjct: 1115 NFDEEERDKMNQMKY----EQKKFLALQMGLDIEERDDD 1149


>gi|321453633|gb|EFX64849.1| hypothetical protein DAPPUDRAFT_219465 [Daphnia pulex]
          Length = 425

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 166/375 (44%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 45  FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDVLCQAKSGMGKTAVFVLATLQQ 104

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY     + V      I  + Q  K    
Sbjct: 105 LEMVENQVSVLVLCHTRELAFQISKEYERFSKYMTTIKVGVFFGGLNIAKDEQTLKSNCP 164

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L      ++ +    +  +     +Q I    P  +Q ++
Sbjct: 165 HIVVGTPGRILALVRSKKLNLRTLKHFVLDECDKMLEALDMRRDVQEIFRNTPHEKQVMM 224

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  + V+  S                  K   L +      
Sbjct: 225 FSATLSKEIRPVCKKFMQDPMEVYVDDESKLTLHGLQQHYVKLKDNEKNRKLFEL--LDV 282

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + LC  L +Q F   AIH ++ Q  R+     FK+   +++VA+
Sbjct: 283 LEFNQVVIFVKSIQRCMALCQLLGEQNFPAIAIHRSMTQEERLSRYQQFKDFKKRILVAT 342

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           DL  RG+DI  V  VFN+D+P  +++Y+HR+ R GR G  G   T V+ E D K ++ ++
Sbjct: 343 DLFGRGMDIERVNIVFNYDMPENSDSYLHRVARAGRFGTKGLGITFVSDENDAKVLNDVQ 402

Query: 362 KLIEKKVDWLNGDLS 376
           +  +  +  L  ++ 
Sbjct: 403 ERFDVSITPLPDEID 417


>gi|294880401|ref|XP_002768997.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
 gi|239872070|gb|EER01715.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
          Length = 689

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 127/393 (32%), Positives = 202/393 (51%), Gaps = 18/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  +   +V  +   G+ +PTP+Q  +IP +  R D+   AQTG+GKT ++++P + 
Sbjct: 203 QFNDGEVDSHIVENINRCGFDRPTPVQKYSIPTLTARRDLMSCAQTGSGKTGAYLIPAIH 262

Query: 62  IL-----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
            +                R   P TLIL PTRELA+Q+ +   K+  N  +   ++ GG 
Sbjct: 263 NMLVDGPPNATSSGDYGRRKAYPVTLILSPTRELASQIHEEARKFCYNTGIRPVVVYGGA 322

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++LERG D+L+ TPGR+ D   R ++ +  I++L+ DEADRMLDMGF P I+ I
Sbjct: 323 DVRTQLRELERGCDILVATPGRLSDLMERFRVSLCQIKMLIFDEADRMLDMGFEPQIRRI 382

Query: 171 TSLVPFTRQTL-----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
                           +FSAT   E+Q+++ +FL+    + V    ST  +I+       
Sbjct: 383 VEQEDMPSSRDGRQSAMFSATFPKEIQQLARDFLKEYIYLTVGRVGSTHGSIKQIMRYVD 442

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
                    L ++L+ Q      ++F   K+    + + L +  +   +IHG+  Q  R 
Sbjct: 443 ENSK--LRDLYRVLEEQTEEGLTLVFVETKRKADEIENMLRRDRYPATSIHGDRSQWERE 500

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L  FK G + ++VA+D+AARGLDI  V  V N+D+PN  ++Y+HRIGRTGRAG  G A
Sbjct: 501 EALKAFKSGELPILVATDVAARGLDISHVNLVINYDLPNNIDDYVHRIGRTGRAGNLGTA 560

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
              V +     +  +  L+E+    +    +SL
Sbjct: 561 IAFVNEGSKPILRDLWTLLEENKQEIPQWFTSL 593


>gi|50122015|ref|YP_051182.1| ATP-dependent RNA helicase DbpA [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612541|emb|CAG75991.1| ATP-independent RNA helicase [Pectobacterium atrosepticum SCRI1043]
          Length = 460

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 128/374 (34%), Positives = 207/374 (55%), Gaps = 8/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L  + +  + + GY + TP+Q  T+P VL   DV   A+TG+GKTA+F + +L 
Sbjct: 5   SFSSLALPAEQLSNLNELGYTEMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLD 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            +          + L+L PTRELA QV+    +  +       L + G  P   Q   L 
Sbjct: 65  RIVVSD---FTTQALVLCPTRELADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSLV 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRI DH  +  L ++++++LV+DEADRMLDMGF   I ++ S  P  RQT
Sbjct: 122 HAPHIVVGTPGRIQDHLRKQSLALDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT   E++++S    + P+R E+      +   +      Y     +   L   + 
Sbjct: 182 LLFSATYPQEIEQISARVQRQPQRFEIADDVEESAIEQR----FYETTKDQRLPLLIAIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN K++  ++  +LE +G SV A+HG+++QR R ++L  F   + +++V
Sbjct: 238 SHYQPASCVVFCNTKRDCQSVFEALEMRGISVSALHGDLEQRDRDQVLVRFSNRSCRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V NF++    E ++HRIGRTGRAG  G A +L   +++   + I
Sbjct: 298 ATDVAARGLDIKELALVVNFELAFDPEVHVHRIGRTGRAGTQGLAVSLCTPQEMNRANLI 357

Query: 361 EKLIEKKVDWLNGD 374
           E  I  ++ W + D
Sbjct: 358 EDYIGMRIKWTSAD 371


>gi|331005214|ref|ZP_08328607.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC1989]
 gi|330420957|gb|EGG95230.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC1989]
          Length = 462

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 140/407 (34%), Positives = 220/407 (54%), Gaps = 10/407 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L+  ++  +    Y + T IQ +++P ++   DV   A+TG+GKTA+F L ML  
Sbjct: 6   FQSLSLNTSLLENLKSLQYKEMTEIQAQSLPPMIAGQDVIAQAKTGSGKTAAFGLAMLNK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+  R RV+   +L+L PTRELA QVA    + G+  +    L +  G PF  Q   LE 
Sbjct: 66  LQVKRFRVQ---SLVLCPTRELADQVAKEIRRLGRGIHNIKVLTLCGGAPFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI +H  +G L ++++   V+DEADRMLDMGF P +  I   +P  RQTL
Sbjct: 123 GAHIVVGTPGRIEEHLRKGTLRLDDVTTFVLDEADRMLDMGFQPSLDAIVDYLPAKRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  +++Q +++  +  P R+ V T     +           +  +      QLL  
Sbjct: 183 LFSATYPEQIQLIAKRIMHEPIRVTVET---AHDDSSIEQHFYALEDGRSRTEALQLLLL 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + ++FCN K+    +   L + GF+  A++G+++Q+ R + L  F   +  ++VA
Sbjct: 240 TYRPNSAVVFCNTKRETQEVADELARMGFAAVALNGDMEQKMRDQTLVRFANNSASILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  VFN+ +    + + HRIGRTGRAG  G AFTL   ++   ++ +E
Sbjct: 300 TDVAARGLDIDDLDAVFNYQLSREIDVHTHRIGRTGRAGSKGHAFTLYTSKERYKVEMLE 359

Query: 362 KLIEKKVDWLN-GDLSSLNPPLEK--IDIAQHNHARKNNPIPQKSTG 405
           K +   V+     ++S LN P  K  +   Q +  +K    P    G
Sbjct: 360 KQLSCVVEPSPLPNVSVLNEPAYKPSMSTLQIDGGKKQKVRPGDIVG 406


>gi|226312873|ref|YP_002772767.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226095821|dbj|BAH44263.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 414

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 120/418 (28%), Positives = 200/418 (47%), Gaps = 9/418 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL +S  ++  + +     PTP+Q + IPL++   D    + TGTGKT +++LP+L+
Sbjct: 4   TFADLQISAPLLTILRERKMETPTPVQSEAIPLIMAGRDALVESPTGTGKTFAYLLPILS 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +   +  V+     +L PT EL  Q+A   E      +  V  +IGG+  + Q +KL++
Sbjct: 64  KVNMEQKDVQAI---VLAPTHELVVQIAREAESLLPGKDTAVMSIIGGVDVKRQIEKLKK 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+L+   + KL ++ ++ +V+DEADRMLD GF   +Q +        Q L
Sbjct: 121 KPVLIVATPGRLLELIEQRKLKVHEVKTVVVDEADRMLDAGFGKPVQEVMKKTLRDTQRL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ +E+   +E F ++   I         E              +K     + L  
Sbjct: 181 LFSATIAEEVVHTAEIFTKDAAVIRAAA----PEGAAGVAHMYLVTDPRKKVDTLRRLLR 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +++ I+F NQ + V  +   L         +H +  +  R + L  F++G   +++ 
Sbjct: 237 LVNVRSSIVFVNQIEKVDEIVSKLNYHNLPCRLLHRDATKEERARTLQQFRDGVFPVLIT 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D++ARG+DIP V  + ++D  + A+ YIHR GRTGR GR G  F++V  ++   I    
Sbjct: 297 TDVSARGIDIPGVECIVHYDPASDADTYIHRSGRTGRMGRAGLVFSIVTPQEQFIIQKFS 356

Query: 362 KLIEKKVDWLNGDLSSLNP--PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           K     +        +L    P+ K   AQ   A   N  P K       KK     K
Sbjct: 357 KQTGLPIAEKFMTHGALEDPRPVRKPAPAQKPGAPAKNASPAKRNQNRAHKKGSFGTK 414


>gi|326511343|dbj|BAJ87685.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 410

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 211/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L P+++  +   G+ +P+ IQ + I  ++   DV   AQ+GTGKTA+F + +L 
Sbjct: 38  NFDNMELKPELLRGIYAYGFERPSAIQERAIMPIITGRDVIAQAQSGTGKTATFTISILQ 97

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++        P+ LIL PTRELA Q+       G   N+     +GG   +    KL+ 
Sbjct: 98  RIDMALRE---PQALILAPTRELAQQIQKVVIALGDYMNVDCHACVGGTSIKEDIAKLQA 154

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L  ++I++  +DEAD ML  GF   + +I  L+P   Q +
Sbjct: 155 GPHVIVGTPGRVFDMINRRFLKTDHIKVFALDEADEMLSKGFAENMYDIFQLLPAETQVV 214

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM +++ +V++ F+++P RI V     T E I   ++A   +  K   L       
Sbjct: 215 LLSATMPNDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYIAVEKEDWKLDTLCDL--YE 272

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFC+ ++ V  L   L  + F+V A+HG+++ ++R  ++  F+ G+ ++++A
Sbjct: 273 TVTITQAVIFCSTRRKVDWLTEKLHSREFTVSAMHGDMEMQAREVVMKEFRSGSSRVLIA 332

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENY+HRIGR GR GR G A   V  ED+K +  IE
Sbjct: 333 TDLLARGIDVQQVSLVINYDLPSSKENYVHRIGRGGRFGRKGVAINFVTTEDVKMLREIE 392

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++  +  +++ L
Sbjct: 393 QFYNTEISEMPLNVADL 409


>gi|21068659|emb|CAD21558.1| HEL protein [Chironomus tentans]
          Length = 421

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 89/375 (23%), Positives = 163/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 41  FRDFLLKPEILRAIVDCGFEHPSAVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +  +             ++  + F KY     + V      I  + +  K    
Sbjct: 101 LEPTDNQAYVLVMCHTRELAFQISKEYERFSKYMSGVKVAVFFGGMPIQKDEEVLKTTTP 160

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L N    ++ +    +  +     +Q I    P  +Q ++
Sbjct: 161 HIVVGTPGRVLALIRSKKLNLKNLKHFILDECDKMLEQLDMRKDVQEIFRNTPHGKQVMM 220

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ + + F+Q+P  + V+  +               +  K   L +      
Sbjct: 221 FSATLSKEIRPICKKFMQDPMEVYVDDETKLTLHGLQQHYVKLKENEKNKKLFEL--LDV 278

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +    L   L  Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 279 LEFNQVVIFVKSVQRCEALATLLTDQNFPAIAIHAEMAQEERLAKYQQFKDFQKRILVAT 338

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K +++++
Sbjct: 339 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNSVQ 398

Query: 362 KLIEKKVDWLNGDLS 376
              +  +  L  ++ 
Sbjct: 399 DRFDVNITELPDEID 413


>gi|291390465|ref|XP_002711762.1| PREDICTED: DDX19-like protein isoform 1 [Oryctolagus cuniculus]
          Length = 478

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 104/382 (27%), Positives = 177/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 92  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 151

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      R P+ L L PT ELA Q     E+ GK +               + +K+
Sbjct: 152 LSRVEPAD---RHPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKI 208

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 209 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 268

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V    +  K        L
Sbjct: 269 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNRDEK--FQALCNL 326

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 327 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGKEKVL 386

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 387 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 446

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 447 SMNILNRIQEHFNKKIERLDTD 468


>gi|238061200|ref|ZP_04605909.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing
           protein [Micromonospora sp. ATCC 39149]
 gi|237883011|gb|EEP71839.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing
           protein [Micromonospora sp. ATCC 39149]
          Length = 557

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 131/370 (35%), Positives = 209/370 (56%), Gaps = 2/370 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG  P+ V A+ +AG  +   IQ   IP+ L+  D+ G A TGTGKT  F +P+L 
Sbjct: 52  TFAELGARPETVEALAEAGITRAFAIQEYAIPIALRGVDMIGQAPTGTGKTLGFGVPLLE 111

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +         +P+ L++ PTREL  QVA +    G+   + V  + GG+ +E Q   L 
Sbjct: 112 RVFAPAEGGDGVPQALVVVPTRELGIQVAKDLAAAGRTRGVRVLPIYGGVAYEPQIDALR 171

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G ++L+ TPGR++D   +  L ++ +  LV+DEADRMLD+GF+  ++ I +++P  RQT
Sbjct: 172 KGVEILVGTPGRLMDLQKQKHLRLDRVRALVLDEADRMLDLGFLDDVEKILAMLPEDRQT 231

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM D +  +S  FL+ P  I     + T  + +   +        K  ++ ++LQ
Sbjct: 232 MLFSATMPDPIVTLSRRFLRRPMTIHAGHTAETGPSPQTEQLVYRTHSMNKIEIVARILQ 291

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      I    ++     +   L+ +GF+V A+HG++ Q +R + L  F+ G I ++V
Sbjct: 292 AEGRGLTMIFTRTKRA-ADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDILV 350

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HV N+D P   + Y HRIGRTGRAG  G A T V  +D+     I
Sbjct: 351 ATDVAARGLDVSGVTHVINYDCPEDQDTYTHRIGRTGRAGATGVAVTFVDWDDMPRWRII 410

Query: 361 EKLIEKKVDW 370
           +K +  ++  
Sbjct: 411 DKTLGLEMPE 420


>gi|123504635|ref|XP_001328793.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121911741|gb|EAY16570.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 515

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 131/449 (29%), Positives = 219/449 (48%), Gaps = 19/449 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS  ++ A+    +  PTP+Q KTIP+ LQ  DVC  A TG+GKTA+F++P + 
Sbjct: 17  SFEELGLSHSIIRALHKMNFEIPTPVQNKTIPIALQGRDVCASAVTGSGKTAAFLIPTVE 76

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP--FEAQNKKL 119
            L + ++     R +IL PTRELAAQ      +  +   LT  LL GG     E + + L
Sbjct: 77  RLLRSKSTEAQTRAVILSPTRELAAQTYSVLSQIIQFTPLTALLLTGGSSNVKEEEERLL 136

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E    ++      I    N     + N+ +LV+DE+DR+L  GF   I+ +   +P T Q
Sbjct: 137 EYPDFLVCTPGRIIDHIKNCEGFTLENVLVLVLDESDRLLQEGFYSQIEEVHKSLPETTQ 196

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           ++L +ATM   + +++E  L+ P RI+++     A+ +            +         
Sbjct: 197 SILVTATMNSSVSRLAEMSLKKPVRIDLDDVFKVAKGL---TQEFIRCTKETRDATLVAC 253

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S+   K  +IF N KK V NL    +  G  V  + G++ Q  R +  S F  G  + +
Sbjct: 254 CSRLCTKKTLIFGNTKKIVHNLYLLFKALGMPVAELQGDMTQLKRYEAHSLFAGGQAEFL 313

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  + +V N+++P     Y+HR+GRT R    G+   L+ ++D + + +
Sbjct: 314 IATDVAARGLDIKGIENVINYNMPRSLTFYVHRVGRTARINTEGRTIALITEDDREMMKS 373

Query: 360 IEKLIEKKVDWLNGDLSSLNPPL-----EKIDIAQHNHARKNNPIPQKS------TGFDR 408
           I   IEK  +       ++   +     +KID  Q   A       ++          +R
Sbjct: 374 I---IEKSAESNPVSKRTIPDNVIEATQKKIDEVQEKVAEMREEEKEEKVLEKSLKDIER 430

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQE 437
            +   S+  S +  K+   +SK ++D ++
Sbjct: 431 ARDIASNPMSAVTDKKRTFVSKNKRDPKD 459


>gi|312880591|ref|ZP_07740391.1| DEAD/DEAH box helicase domain protein [Aminomonas paucivorans DSM
           12260]
 gi|310783882|gb|EFQ24280.1| DEAD/DEAH box helicase domain protein [Aminomonas paucivorans DSM
           12260]
          Length = 561

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 138/466 (29%), Positives = 234/466 (50%), Gaps = 28/466 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIP--LVLQRHDVCGIAQTGTGKTASFVLPML 60
           F +  L P+++ A+   G+  P P+Q++ +    +L   D+   A+TG+GKT +F LP+L
Sbjct: 6   FDEFSLRPELLRALERKGFENPMPVQVRILEDDTLLDG-DLIVQARTGSGKTLAFALPLL 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +E+G    R P+ L+L PTRELA Q A  F+  G    +  A L+GG+  + Q + L 
Sbjct: 65  QRMERGE---RTPQVLVLSPTRELAQQTAREFQWVGGEMGIRPASLVGGMDMDRQIRSLR 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGR+LDH  RG L    I+ L++DE D MLD+GF   +++I S +    +T
Sbjct: 122 DGAAVVVGTPGRVLDHLRRGTLRPEGIQSLILDEGDHMLDLGFRDELESIMSALGTVERT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +++  ++  +L  P++I + T ++  E I       Y   S++       + 
Sbjct: 182 WLFSATMPEDVVTLARKYLNAPRKISLVTDAARHEDIAQ---RAYVIPSRRRFEGLANVL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  K  ++FC  +     L   L  +GF   A+HG++ QR R   L +F+ G + L+V
Sbjct: 239 LCEHPKRALLFCATRMETQELAERLGDEGFRAMALHGDMTQRERNNALESFRRGRVDLLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + HV  + +P   E +IHR GRTGRAG  G+   L+   + +   ++
Sbjct: 299 ATDVAARGLDIDGLSHVIQYGLPGCLETFIHRSGRTGRAGHEGRNVILLTAREARQFKSL 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK---------- 410
                  ++WL    +S    +E I  A+       +P  +++     ++          
Sbjct: 359 VSHTALDIEWLPAPDAS---EVEGISRAEFEKTLLESPEDEEAYREWAQQLLQREDTEEL 415

Query: 411 ------KNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMP 450
                 + + SQ     ++E  +    ++  +  D    G   + P
Sbjct: 416 LAGLLARAFGSQARGYAIREDVEAEMAREQNRRYDPRPTGRGSDRP 461


>gi|331214083|ref|XP_003319723.1| ATP-dependent RNA helicase DBP4 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309298713|gb|EFP75304.1| ATP-dependent RNA helicase DBP4 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 844

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 126/452 (27%), Positives = 202/452 (44%), Gaps = 18/452 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL +S   +  +  A + K TPIQ   IP  L+  DV G A+TG+GKT +F++P+L +
Sbjct: 47  FSDLPISRATLKGLQAAKFEKLTPIQALAIPRALKGRDVLGAARTGSGKTLAFLIPVLEM 106

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         LI+ PTRELA Q+ +     GK +  +  L+IGG   E +  +L R
Sbjct: 107 LYRQKWGAMDGLGALIISPTRELAVQIFEVLRSIGKFHAFSAGLVIGGKSLEDERDRLGR 166

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++                  +N+++LV+DEADR+LDMGF   +  I S +P +RQ+L
Sbjct: 167 MNILVSTPGRLQQHLEQTTNFDSDNLQVLVLDEADRILDMGFANSVNAIISSLPNSRQSL 226

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L           +     +        +            L  
Sbjct: 227 LFSATQTKSVKDLARLSLTGDPEYVSARETGVERDLTTPKELVQSYMVTPLECKIDYLWG 286

Query: 242 QDTMK---NGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTI 296
                     I+F +  K V  +          +    +HG   Q  R++I   F     
Sbjct: 287 FLKTHLKTKMIVFLSSCKQVRFVHEIFRHLRPGIPLLHLHGKQKQVKRLEIYERFSSSPQ 346

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             + A+D+AARGLD P V  V   D P   + YIHR+GRT R    GKA  L+   +   
Sbjct: 347 VCLFATDIAARGLDFPSVDWVVQVDCPEDVDTYIHRVGRTARYQSGGKALLLLLPSE--- 403

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ-KSTGFDRRKKNYSS 415
               E+ + KK +     +S + P   K    Q+    +    P+ K  G    ++ + S
Sbjct: 404 ----EEGMSKKWEARGIVVSKVKPNESKKQSIQNQIQAQMFKFPELKFLG----QRAFIS 455

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
               I L+++++I KL++      A+S+G  G
Sbjct: 456 YVRSIHLQKNKEIFKLKELDLVKFAESMGLPG 487


>gi|300120970|emb|CBK21212.2| unnamed protein product [Blastocystis hominis]
          Length = 617

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 132/382 (34%), Positives = 202/382 (52%), Gaps = 7/382 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F        V+  +  AG+  PTPIQ +  P+ L   DV GIA TG+GKT +F+LP +
Sbjct: 192 LSFDVSPFPADVLDVIHRAGFKAPTPIQSQGWPMALSGRDVVGIAATGSGKTLAFILPAI 251

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +           P  L+L PTRELA Q  +   ++G +  +    + GG+P   Q   
Sbjct: 252 IHIRAQPMLRPGDGPICLVLSPTRELANQTQEECARFGTSSGIRNTCVYGGVPRRQQAYD 311

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RGA+++I TPGR+LD    G   +  +  LV+DEADRMLDMGF P I+ I S +   R
Sbjct: 312 LRRGAEIVIATPGRLLDFLESGVTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDR 371

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL++SAT   E+Q ++ +FL NP ++ + +            +    +  K      ++
Sbjct: 372 QTLMWSATWPKEVQALARDFLTNPIQVNIGSLDLKVTDHVKQVIKCVTEGQK-LDETLKI 430

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L+S++     IIF   K+    L   L ++GF+  AIHG+ +QR R  +L  FK G + +
Sbjct: 431 LRSKNPESRCIIFTQSKRGADELTRILRQRGFNALAIHGDKEQRERDFVLHEFKSGRVTI 490

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR---AG-RHGKAFTLVAKEDI 354
           MVA+D+A+RGLD+ D+  V N+D P+  E+YIHR+GR GR    G   G A +       
Sbjct: 491 MVATDVASRGLDVKDIRVVINYDFPSCVEDYIHRVGRAGRKTADGYSEGMAVSFFTDTSA 550

Query: 355 KHIDAIEKLIEKKVDWLNGDLS 376
           K    + K++ +    +  +L 
Sbjct: 551 KVTRELIKVLREAHQDVPPELE 572


>gi|164419743|ref|NP_001104792.1| ATP-dependent RNA helicase DDX54 isoform 1 [Homo sapiens]
 gi|19110894|gb|AAL85336.1|AF478457_1 ATP-dependent RNA helicase [Homo sapiens]
 gi|119618445|gb|EAW98039.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54, isoform CRA_a [Homo
           sapiens]
          Length = 882

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 129/366 (35%), Positives = 196/366 (53%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 98  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 158 LKTHSAQTGA-RALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I + +P   QT+L
Sbjct: 217 PDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVL 276

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +   E ++  F     + +K   LL  L    
Sbjct: 277 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSF-FLVREDTKAAVLLHLLHNVV 335

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K +   L   L  Q  S   I+  +D  +R   L+ F  G    ++ +
Sbjct: 336 RPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVT 395

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA ++I ++  +  
Sbjct: 396 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHL 455

Query: 363 LIEKKV 368
            + + +
Sbjct: 456 FLGRSL 461


>gi|38014855|gb|AAH05848.2| DDX54 protein [Homo sapiens]
          Length = 864

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 129/366 (35%), Positives = 196/366 (53%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 81  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 140

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 141 LKTHSAQTGA-RALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 199

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I + +P   QT+L
Sbjct: 200 PDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVL 259

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +   E ++  F     + +K   LL  L    
Sbjct: 260 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSF-FLVREDTKAAVLLHLLHNVV 318

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K +   L   L  Q  S   I+  +D  +R   L+ F  G    ++ +
Sbjct: 319 RPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVT 378

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA ++I ++  +  
Sbjct: 379 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHL 438

Query: 363 LIEKKV 368
            + + +
Sbjct: 439 FLGRSL 444


>gi|28301751|gb|AAN59978.1| DEAD box RNA helicase DP97 [Homo sapiens]
 gi|119618446|gb|EAW98040.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54, isoform CRA_b [Homo
           sapiens]
          Length = 865

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 129/366 (35%), Positives = 196/366 (53%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 82  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 141

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 142 LKTHSAQTGA-RALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 200

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I + +P   QT+L
Sbjct: 201 PDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVL 260

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +   E ++  F     + +K   LL  L    
Sbjct: 261 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSF-FLVREDTKAAVLLHLLHNVV 319

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K +   L   L  Q  S   I+  +D  +R   L+ F  G    ++ +
Sbjct: 320 RPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVT 379

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA ++I ++  +  
Sbjct: 380 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHL 439

Query: 363 LIEKKV 368
            + + +
Sbjct: 440 FLGRSL 445


>gi|51094101|ref|NP_076977.3| ATP-dependent RNA helicase DDX54 isoform 2 [Homo sapiens]
 gi|46576615|sp|Q8TDD1|DDX54_HUMAN RecName: Full=ATP-dependent RNA helicase DDX54; AltName:
           Full=ATP-dependent RNA helicase DP97; AltName: Full=DEAD
           box RNA helicase 97 kDa; AltName: Full=DEAD box protein
           54
 gi|162319036|gb|AAI56670.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [synthetic construct]
          Length = 881

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 129/366 (35%), Positives = 196/366 (53%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 98  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 158 LKTHSAQTGA-RALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I + +P   QT+L
Sbjct: 217 PDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVL 276

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +   E ++  F     + +K   LL  L    
Sbjct: 277 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSF-FLVREDTKAAVLLHLLHNVV 335

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K +   L   L  Q  S   I+  +D  +R   L+ F  G    ++ +
Sbjct: 336 RPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVT 395

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA ++I ++  +  
Sbjct: 396 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHL 455

Query: 363 LIEKKV 368
            + + +
Sbjct: 456 FLGRSL 461


>gi|297846156|ref|XP_002890959.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336801|gb|EFH67218.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 539

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 124/393 (31%), Positives = 199/393 (50%), Gaps = 10/393 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+  L   V+       + KP+PIQ  T P +L   D+ GIA+TG+GKT +F +P + 
Sbjct: 119 TFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIM 176

Query: 62  ILEK------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            + K      G ++   P  L+L PTRELA Q++D   + G+   L    + GG     Q
Sbjct: 177 HVLKKNKKLGGGSKNVNPTCLVLSPTRELAVQISDVLSEAGEPCGLKSICVYGGSSKRPQ 236

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              +  G D++I TPGR+ D     +L ++++  +V+DEADRMLDMGF   ++ I S   
Sbjct: 237 INAIRSGVDIVIGTPGRLRDLIESNELRLSDVSFVVLDEADRMLDMGFEEPVRFILSKTN 296

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRI--EVNTPSSTAETIEHCFVATYAQYSKKCA 233
             RQ ++FSAT   ++ K+++ F+          +   +    +         +   +  
Sbjct: 297 KVRQMVMFSATWPLDVHKLAQEFMDPNPIKVVIGSVDLAANHDVMQIIEVLDERARDQRL 356

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +       +      ++F   K     L   L+++G+   +IHGN  Q  R + LS FKE
Sbjct: 357 VALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKE 416

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G+  L+VA+D+AARGLDIPDV  V N+  P   E+Y+HRIGRTGRAG+ G A T   +++
Sbjct: 417 GSCPLLVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQN 476

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
                 +  ++ +    +  DL      ++K +
Sbjct: 477 KGLAGELVNVLREAGQVVPDDLLKFGTHVKKKE 509


>gi|260102894|ref|ZP_05753131.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           helveticus DSM 20075]
 gi|260083296|gb|EEW67416.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           helveticus DSM 20075]
          Length = 453

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 133/440 (30%), Positives = 207/440 (47%), Gaps = 13/440 (2%)

Query: 1   MD--FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           M+  FAD  + P +   +    + KPT +Q K IP +L    V   A TG+GKT ++++P
Sbjct: 1   MNNIFADSRIRPAIQEGLKKIHFEKPTKVQEKVIPAMLSDLRVVVQAATGSGKTHAYLVP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +   +++    V+   TL      +   QVA         +     L  G        K 
Sbjct: 61  IFNEIDEDAHYVQAIVTLPSRELADQLYQVARQLRDAAGMHFSIAHLAGGTDRERQLEKY 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 ++I TPGR+LD   +   +++ ++  VIDEAD  LDMGF+  I  + S +    
Sbjct: 121 QNNTPQLVIATPGRLLDFVQKKVFVVDQVKTFVIDEADMTLDMGFLADIDQVASKMTKDV 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q   FSAT+  +L      ++ +P +I ++ PS  A TI           SK    +   
Sbjct: 181 QIAAFSATIPVKLSNFLRKYMAHPDQIVIDNPSVIAPTI---KNDLLDIGSKNRKSVLYK 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +       ++F N K+ V  L   L+ QG  V  IHG + +R R + L   ++G  Q 
Sbjct: 238 LLTMGQPYLALVFANTKQTVDELTRYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQFQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARGLDI  V  V N+++P   E  IHRIGRTGR G  G A TL+ +E++  I+
Sbjct: 298 VVASDLAARGLDIDGVSLVINYEIPRDIEFVIHRIGRTGRNGLSGHAITLICEEEMNRIE 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF-----DRRKKNY 413
            +EK +    D++      L P   K   ++ N   KN+    K  G+      +RK  Y
Sbjct: 358 DLEK-MGVHFDFVEIKNGELVP--RKHYRSRENRQGKNHKFDTKLVGYVKKEKRKRKPGY 414

Query: 414 SSQKSHIPLKESEKISKLQQ 433
             +      +++ +  KL+Q
Sbjct: 415 KKKIKRAIQEDNRQKRKLEQ 434


>gi|190576089|ref|YP_001973934.1| ATP-dependent RNA helicase RhlB [Stenotrophomonas maltophilia
           K279a]
 gi|190014011|emb|CAQ47651.1| putative ATP-dependent RNA helicase [Stenotrophomonas maltophilia
           K279a]
          Length = 574

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 128/408 (31%), Positives = 213/408 (52%), Gaps = 8/408 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L P +   +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++
Sbjct: 9   LTFSSFELHPALQAGLEGAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVV 68

Query: 61  T----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                       +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q 
Sbjct: 69  NRLLTRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGSDLGLRFALVYGGVDYDKQR 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIE-ILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L++G DV+I TPGR++D+  + K++  +   I V+DEADRM D+GFI  I+ +   +P
Sbjct: 129 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                     + T   + +   +    +  ++   + T           +    +K   L
Sbjct: 189 ERTTRQTLLFSATLSHRVLELAYEHMNEPQKLVVEAETITAARVRQRIYFPADDEKI-PL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L S+      ++F N K  V  +  SLEK G+ V  + G++ Q+ R  +L+ F++G 
Sbjct: 248 LLGLLSRSEGARTMVFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLLNRFQKGQ 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  + +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 308 LEILVATDVAARGLHIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            +  IE  IE+K+  + +  +L +  P  E+   A       N  + Q
Sbjct: 368 GLPDIEAYIEQKIPSEPVTKELLTPLPRPERPAPAAGEEGEDNESVGQ 415


>gi|328711288|ref|XP_001948608.2| PREDICTED: ATP-dependent RNA helicase vasa, isoform A isoform 1
           [Acyrthosiphon pisum]
 gi|328711290|ref|XP_003244501.1| PREDICTED: ATP-dependent RNA helicase vasa, isoform A isoform 2
           [Acyrthosiphon pisum]
          Length = 579

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 123/386 (31%), Positives = 195/386 (50%), Gaps = 12/386 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL   ++  ++   Y  PTPIQ   IP+++   D+   AQTG+GKTA+FVLP++ 
Sbjct: 162 SFKSSGLREVLIEKLVKCNYTTPTPIQKYCIPVIISGRDMMATAQTGSGKTAAFVLPIVH 221

Query: 62  ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            L               P+ +I+ PTRELA Q+ D   K      +  ++L GG     Q
Sbjct: 222 TLLSQPQDLVFDRDYCEPQCIIMSPTRELAIQIRDVVFKLTNGTCIKQSILYGGTATGHQ 281

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G  +L+ TPGR+ D   RG +  N++   V+DEADRMLDMGF P I+ I +   
Sbjct: 282 RGTLANGIHILVATPGRLNDFVGRGYVSFNSLRFFVLDEADRMLDMGFKPDIEKILNHET 341

Query: 176 FTRQTLL----FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                      FSAT+ D++Q +S+ +L+             A       +    ++ KK
Sbjct: 342 MVDVNTRQTLLFSATLADDIQMLSKAYLKPNYVFVAVGEIGGACKDVKQEIREVTKFEKK 401

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L++ L    D  K  ++F  QK+N   +   L ++ +   +IHG+ +Q  R + L +F
Sbjct: 402 KELIKVLESLGDC-KGTMVFVEQKRNADFIAAFLSEKDYPTTSIHGDREQPEREQALRDF 460

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-A 350
           K   ++++VA+ +AARGLDI  V  V NFD+P+  + Y+HRIGRTGR G  G+A +   +
Sbjct: 461 KNNRMKILVATAVAARGLDIKGVNCVINFDMPSSIDEYVHRIGRTGRLGNSGRAVSFYDS 520

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLS 376
             D      + +++++    +   L 
Sbjct: 521 TSDSNLSSDLVRILKQAEQEVPSFLD 546


>gi|325103790|ref|YP_004273444.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324972638|gb|ADY51622.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 372

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 119/373 (31%), Positives = 198/373 (53%), Gaps = 5/373 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60
            F DLG+S + + A+ +   +KPT IQ   IP +L +  D  G AQTGTGKTA+F LP+L
Sbjct: 4   TFRDLGISEQFIQALEENNIIKPTEIQKLAIPYLLKEGKDFIGQAQTGTGKTAAFGLPVL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     +++          +  A+    F KY      T A+  GG   + Q  +L+
Sbjct: 64  EQIDANSKVIQVLILCPTRELGQQIAKQLFKFTKYSDKKIFTEAVY-GGEKIDIQIGRLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   +++ TPGR++D   R  + +++++ +++DEAD ML MGF   I  I       R T
Sbjct: 123 RPTHIVVATPGRLIDLLERKAINLDHVKTIILDEADEMLSMGFKKDIDKILEYTNGQRYT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT+   L  + ++++  P ++E+       E I+H ++       K    L     
Sbjct: 183 WLFSATIPAALDDIIKSYMDEPFKVEIRKEQLVNENIDHKYMVVDL---KDKLDLLSRFL 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +++   GI+FC  KKN   L   L  + F V AIHG++ QR R K++  FK   + +++
Sbjct: 240 KENSKARGIVFCRTKKNAELLSKQLYARNFKVEAIHGDMGQRDREKVMRAFKSERLPILI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D++ARG+D+ ++ +V ++D+P++ E Y HR GRT R GR G +   +A  DI  +  +
Sbjct: 300 ATDISARGIDVQNLNYVIHYDLPDQMEYYTHRSGRTARGGRKGLSLIFIAPNDIDKVKDL 359

Query: 361 EKLIEKKVDWLNG 373
           E  +  K+   N 
Sbjct: 360 EANLNIKIRNFNS 372


>gi|324504798|gb|ADY42068.1| ATP-dependent RNA helicase DDX41 [Ascaris suum]
          Length = 657

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 131/390 (33%), Positives = 198/390 (50%), Gaps = 17/390 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++   P ++ ++ +   + PT IQ++ IP+VL   D+ GIA TG+GKT +F LP++ 
Sbjct: 216 SFIEMKFPPAIIRSLREKKIISPTVIQMQGIPVVLSGRDMIGIASTGSGKTLTFALPLVM 275

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKY-------GKNYNLTVALLIGG 109
              +    +       P  LI+ P+RELA Q+ D  E+             L V L IGG
Sbjct: 276 FCLEQEISLPFRHGEGPYGLIIVPSRELAKQIHDVIERIFESITIGSGFPRLRVGLCIGG 335

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +P   Q +  ERG  V + TPGR+ D  ++    +     LV+DEADRMLDMGF   I+ 
Sbjct: 336 LPIGEQARVFERGVHVAVATPGRLSDLLSKKVFNLQICRYLVLDEADRMLDMGFEEEIRT 395

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I S     RQTLLFSATM  ++Q     F ++     +      A       +       
Sbjct: 396 IFSFFKGQRQTLLFSATMPRKIQN----FARSALVRAIIVNVGRAGAASLNVLQEIEYVR 451

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
               L + L   Q T    +IF  +K +V N+   L  +G  V ++HG  DQ+ R   + 
Sbjct: 452 ADEKLTRILDCLQKTPPRVLIFAEKKSDVDNIYEYLLVKGVDVASLHGGKDQKDRHTGVD 511

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+ G   ++VA+D+A++GLD  ++ HV NFD+P   ENY+HRIGRTGR+G+ G A T V
Sbjct: 512 AFRRGEKDVLVATDVASKGLDFENIQHVINFDMPEDIENYVHRIGRTGRSGKKGMATTFV 571

Query: 350 AKE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
            +  D+  +  +  L+ +    L   L  +
Sbjct: 572 NRRADMSVLQDLRALLLEAGQQLPLFLRDI 601


>gi|167534955|ref|XP_001749152.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772305|gb|EDQ85958.1| predicted protein [Monosiga brevicollis MX1]
          Length = 543

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 115/467 (24%), Positives = 203/467 (43%), Gaps = 45/467 (9%)

Query: 2   DFADLGLSPK--------VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTA 53
            FA LG  P         ++ A+ +  + +P+PIQ++ IP +L   DV G+A TG+GKT 
Sbjct: 74  SFAQLG-KPAAGPAASSGLLQALTEF-FKEPSPIQMQAIPALLSNRDVVGVAPTGSGKTL 131

Query: 54  SFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADN---------------------- 91
           +F +PM+ +L+  +         IL PTRELAAQ+                         
Sbjct: 132 AFAVPMMQLLQAPKEEGFR--CCILAPTRELAAQIKRELDLLNTHLHLKISLLTKARAAS 189

Query: 92  -----FEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNN 146
                 +K+G        + +           +    D+L+ TP R++       + ++ 
Sbjct: 190 GSLTSSKKHGWWPGCPKMIPVCPKVLLKLTWCMRARPDILVATPMRLVHALQHKLVDLSA 249

Query: 147 IEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL-FSATMTDELQKVSENFLQNPKRI 205
           +  LV+DEADR+ + GF   I  + +     ++ +  FSATM + ++ +++  L +  RI
Sbjct: 250 VRWLVVDEADRLFENGFEQQIDEVIAACSHKKRRIALFSATMPERVETLAQTVLHDYVRI 309

Query: 206 EVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL 265
            V   ++  + +E       ++  K  A   + +         +IF   K     L   L
Sbjct: 310 VVGAANAANQDVEQELKFVGSEEGKMTA--IRQMLQTGLQPPVLIFVQSKSRAQQLFEEL 367

Query: 266 EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNR 325
             +  +V  IH +  Q+ R +++  F+EG + +++ +DL  RG+D   V  V N+D P  
Sbjct: 368 VYENVNVDVIHADRTQQQRDEVVKRFREGQVWVLICTDLMGRGVDFKAVNVVINYDFPPN 427

Query: 326 AENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
           A  YIHR+GRTGRAG  G+A T    +D   +  I  +++     +   +  L    ++ 
Sbjct: 428 ATEYIHRVGRTGRAGHRGRAVTFFTVDDRPMLRNIANVVKASGSEVPEWMLKLKKTEKQR 487

Query: 386 DIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQ 432
                     +NP  Q     D++ K   +QK+        K  K +
Sbjct: 488 SRQIERAPVSSNPNVQ---AADKKTKAKRAQKASDAGAAPPKKGKHR 531


>gi|145501031|ref|XP_001436498.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124403638|emb|CAK69101.1| unnamed protein product [Paramecium tetraurelia]
          Length = 553

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 120/390 (30%), Positives = 192/390 (49%), Gaps = 16/390 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F DL +  +++  +      KPTPIQ++ +P VL   D+ G+A +G GKT  F+LP   
Sbjct: 109 SFQDLRVDHRILKILSKMKIKKPTPIQMQGLPTVLMGRDIIGVAPSGQGKTLVFLLPALL 168

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG------I 110
                 ++    R   P  LIL P+ ELA    +  ++Y + +       I        +
Sbjct: 169 QCVDEQMKMPIIRGEGPFALILLPSHELAILTYELAKQYCQKFQKKGFPGIHCLLGIGGM 228

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              +Q + ++ G  ++I TPGRI D  N+ K+ M+    +V+DEADRMLD  F   I+NI
Sbjct: 229 DMSSQLQSIKNGVHIVIGTPGRISDMVNKKKINMDLCRFIVLDEADRMLDQVFELEIRNI 288

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQT+LFSAT+  ++Q+    F +      +      +  I    +       +
Sbjct: 289 LEHFTGPRQTMLFSATLPKKIQE----FTKQTLVDPLVINVGRSGQINLNVIQEILYVKQ 344

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  L   L   + T    +IF   + +V ++   L  +G  V  +HG   Q  R K L  
Sbjct: 345 EEKLHYLLDSLKKTTPPVVIFSEHQNDVDDINEYLLIKGVEVVGLHGGKQQEDRTKALKQ 404

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F  G   ++VA+D+AA+GLD PD+ HV N+D+P   E+YIHRIGRTGR G+ G+A T V 
Sbjct: 405 FLNGQKDVLVATDVAAKGLDFPDIKHVINYDMPKDIESYIHRIGRTGRQGKTGRATTFVN 464

Query: 351 K-EDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           + ++   +  ++ L+ +    +   L  L 
Sbjct: 465 RQQEESILLDLKYLLVESKQKIPQFLEKLK 494


>gi|228476149|ref|ZP_04060857.1| ATP-dependent RNA helicase [Staphylococcus hominis SK119]
 gi|228269972|gb|EEK11452.1| ATP-dependent RNA helicase [Staphylococcus hominis SK119]
          Length = 448

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 133/450 (29%), Positives = 217/450 (48%), Gaps = 15/450 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L+  ++ AV D  + KPT IQ + IP + +  ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEIFNLNTNLIDAVKDLNFNKPTEIQNRIIPRIKKGTNLIGQSQTGTGKSHAFLLPLIDL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121
           +      ++ P+++++ PTRELA Q+            ++ V+L IGG   E   ++  +
Sbjct: 66  INT---DIKEPQSIVVAPTRELAQQLYKVASHLASFQSDIKVSLFIGGTDIEKDKQRTNQ 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L ++    L+IDEAD ++D+G I  +  I + +       
Sbjct: 123 QPQLVIGTPTRINDLAQSGHLHIHKASYLIIDEADLLIDLGLIEDVDYIAARLDENANIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+   L+     +L +P+ + V+  S   + IE   + T         L       
Sbjct: 183 VFSATIPKSLEPFLNKYLSHPEYVVVDNKSQNKKNIEFYLIPTKGTEKVDKTLQL---ID 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFCN ++N   L  SL + G  V  IHG +  R R + +   +    Q ++A
Sbjct: 240 ILNPYLCIIFCNSRENANELAQSLNESGIKVGMIHGGLTPRERKQQMKRIRNLDFQYVIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  IE
Sbjct: 300 SDLASRGIDIEGVSHVVNFDVPNDIDFFTHRVGRTGRGNYKGVALTLYSPDEEHNISLIE 359

Query: 362 K--LIEKKVDWLNGDLSSLNP-----PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                   VD  NG+L  +         E+ D    N  +       K+      KK + 
Sbjct: 360 DKGYHFDNVDIKNGELKPIKAHNTRHKRERKDDHLTNQVKHKVRSKSKNKVKPGYKKKFK 419

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLG 444
            +   +  +E ++ SK Q+  Q+   +  G
Sbjct: 420 QEVERMKRQERKQYSK-QRSRQQRKNNKKG 448


>gi|291302062|ref|YP_003513340.1| DEAD/DEAH box helicase domain-containing protein [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571282|gb|ADD44247.1| DEAD/DEAH box helicase domain protein [Stackebrandtia nassauensis
           DSM 44728]
          Length = 557

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 142/405 (35%), Positives = 217/405 (53%), Gaps = 14/405 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+  + V A+ + G  +   IQ   IP+ ++ +D+ G A TGTGKT  F +P+L 
Sbjct: 29  SFTDLGVRAETVAALSEIGITQAFAIQEYAIPIAMRGNDIIGRAPTGTGKTLGFGVPLLE 88

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +          P+ L++ PTREL  QV+ + E  GK   + V  + GG  +E Q + L 
Sbjct: 89  TVTSAAEGADGRPQALVVVPTRELGLQVSRDIEAAGKTRGIRVLPIYGGRAYEPQLEALR 148

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G ++++ TPGR+LD      L +  +   V+DEADRMLD+GF   ++ + + +P  RQT
Sbjct: 149 TGVEIVVGTPGRLLDLLKAKHLKLGAVHTAVLDEADRMLDLGFAEDVEKLLAALPEQRQT 208

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM D +  +S  FL+ P  I     +  A + +      Y  +S     +   + 
Sbjct: 209 MLFSATMPDAIVSLSRKFLKQPMTIHAEVATDNAPSAQT-KQLAYLTHSLNKIEVLARIL 267

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K++   +   LE +GF+V A+HG++ Q +R + L  F+ G I ++V
Sbjct: 268 QAKDRGLTIVFSRTKRHTQRVADDLEFRGFAVAAVHGDLGQNARERALRAFRSGKIDVLV 327

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ DV HV N+D P  AE Y+HRIGRTGRAG  G A T V+ ED       
Sbjct: 328 ATDVAARGLDVRDVTHVINYDSPEDAETYVHRIGRTGRAGATGVAVTFVSWEDAPRW--- 384

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            K+I K +D        L+ P+E    + H +   +  IP+ + G
Sbjct: 385 -KIIAKTLDL------ELSDPVETYHTSDHLYT--DLDIPEGAPG 420


>gi|170932536|ref|NP_031942.2| ATP-dependent RNA helicase DDX19A [Mus musculus]
 gi|15030051|gb|AAH11270.1| Ddx19a protein [Mus musculus]
 gi|26340198|dbj|BAC33762.1| unnamed protein product [Mus musculus]
 gi|74138902|dbj|BAE27252.1| unnamed protein product [Mus musculus]
 gi|148679533|gb|EDL11480.1| mCG132574 [Mus musculus]
          Length = 478

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 104/382 (27%), Positives = 177/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 92  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 151

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      R P+ L L PT ELA Q     E+ GK +               + +K+
Sbjct: 152 LSRVEPAD---RYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKV 208

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 209 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 268

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V    +  K        L
Sbjct: 269 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREEK--FQALCNL 326

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 327 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 386

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 387 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 446

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 447 SMNILNRIQEHFNKKIERLDTD 468


>gi|331234891|ref|XP_003330106.1| ATP-dependent RNA helicase DED1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309309096|gb|EFP85687.1| ATP-dependent RNA helicase DED1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 660

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 131/399 (32%), Positives = 206/399 (51%), Gaps = 23/399 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           ++F++  L P ++  +  A Y  PTP+Q  ++P+V    D+   AQTG+GKT  F+ P+ 
Sbjct: 175 LEFSNSPLDPHLLANIKLARYKTPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPII 234

Query: 60  ----------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV 103
                                    R   P  LIL PTREL +Q+ D   K+     +  
Sbjct: 235 SAAFAKGPLPTSGMQAQNPRGGYGKRKAFPTALILAPTRELVSQIHDEARKFTYRSWVRP 294

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163
           A++ GG     Q +++E G D+L  TPGR++D   RG++ ++NI  LV+DEADRMLDMGF
Sbjct: 295 AVVYGGADMNTQLRQIESGCDLLSATPGRLVDFIERGRISLSNIRFLVLDEADRMLDMGF 354

Query: 164 IPYIQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
            P I+ I           RQTL+FSAT   ++Q ++++FL++   + V    ST+E I  
Sbjct: 355 EPQIRRIVTGEDMPGVHERQTLMFSATFPRDIQMLAKDFLKDYIFLSVGRVGSTSENITQ 414

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                     +       +L S  T    ++F   K+    L + L +  F+  +IHG+ 
Sbjct: 415 KIEYVEDADKRSVL--LDVLSSMPTGGLTLVFVETKRMADMLENFLIQSNFAATSIHGDR 472

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            QR R + L  F+     +MVA+ +AARGLDIP+V HV N+D+PN  ++Y+HRIGRTGRA
Sbjct: 473 SQRERERALETFRSSRTPVMVATAVAARGLDIPNVTHVVNYDLPNDIDDYVHRIGRTGRA 532

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G  G +     + +   +  +  L+ +    +   L ++
Sbjct: 533 GNTGISTAFFNRNNKNIVRELIDLLREANQEIPAWLETV 571


>gi|301779033|ref|XP_002924934.1| PREDICTED: probable ATP-dependent RNA helicase DDX52-like
           [Ailuropoda melanoleuca]
          Length = 598

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 109/444 (24%), Positives = 209/444 (47%), Gaps = 18/444 (4%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     ++ +++  +LDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 161 TFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 220

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L++   +      LI+ PTRELA Q+     K  +        +    +  +   
Sbjct: 221 PILMHLKQPTNKGFR--ALIISPTRELANQIHRELVKISEGTGFRIHMIHKAAVAAKKFG 278

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++    +    ++  ++E LV+DE+D++ + G   +        
Sbjct: 279 PKSSQKFDILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIF 338

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT   ++++  +  L N   + +   +S AET+E   +   ++  K
Sbjct: 339 LACTSHKVRRAMFSATFAYDVEQWCKLNLDNVITVSIGARNSAAETVEQELLFVGSETGK 398

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +  +     ++F    +    L H L  +G +V  IH +  Q+ R   + +
Sbjct: 399 LLAMRELVKKGFNPP--VLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHS 456

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   
Sbjct: 457 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFT 516

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           ++D   + ++  +I++    +   +      L K          + + I      F  + 
Sbjct: 517 EDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERDSISTTPKYFLEKA 576

Query: 411 KNYSSQKSHIPLKESEKISKLQQD 434
           +N   ++  +  + S+K + L+  
Sbjct: 577 EN---KRKKVTGQNSKKKAALEDK 597


>gi|291616471|ref|YP_003519213.1| DbpA [Pantoea ananatis LMG 20103]
 gi|291151501|gb|ADD76085.1| DbpA [Pantoea ananatis LMG 20103]
          Length = 459

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 129/404 (31%), Positives = 211/404 (52%), Gaps = 15/404 (3%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY   TP+Q  T+P +L   DV   A+TG+GKTA+F + +L 
Sbjct: 4   FSSLNSLPDSQLDNLREMGYTSMTPVQAATLPAILDGRDVRAQAKTGSGKTAAFGIGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++    + +    LIL PTRELA QV++   +  +       L +  G P  AQ   L 
Sbjct: 64  HIDSAHFQTQ---ALILCPTRELADQVSNVLRQLARFTRNIKILTLCGGQPMSAQRDSLV 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILDH  R  L + ++  LV+DEADRML+MGF   ++ I +  P +RQT
Sbjct: 121 HAPHIVVGTPGRILDHIKRETLKLESLRTLVLDEADRMLEMGFRDDMETIIAATPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  +S+ F    +R  ++  +     +             +   L   L 
Sbjct: 181 LLFSATWPEGIAALSQRF----QREALSVVTEEVSELPAIEQQFIEASHGEKLSLLISLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+    + ++FCN K+   ++  +L  +  S   +HG+++QR R ++L  F  G+ +++V
Sbjct: 237 SERQPSSCVVFCNTKRECDDIAAALNARDISALPLHGDLEQRDRERVLIRFANGSGRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+ +    E ++HRIGRT RAG  G A + VA +++    A+
Sbjct: 297 ATDVAARGLDIKLLSLVVNYQLAWDPEVHLHRIGRTARAGEQGAAVSFVAADEMARAHAL 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQH----NHARKNNPIP 400
           E  +++K+ W+    SSL    + +  A      +  RK    P
Sbjct: 357 EDFLQQKLPWVAA--SSLKKSSKALPAAMMTLCIDGGRKAKIRP 398


>gi|170085389|ref|XP_001873918.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651470|gb|EDR15710.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 434

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 98/377 (25%), Positives = 162/377 (42%), Gaps = 5/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 53  FRDFLLKPELLRAISDLGFEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQ 112

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           LE     V +       E   ++  +     +        T              +   +
Sbjct: 113 LEPVNGEVSVLVLCHTRELAFQIKNEYTRFAKYMPDVRVSTFYGGTPVTKDAEILRDKTK 172

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM-GFIPYIQNITSLVPFTRQT 180
              +++ TPGR+        L   N++  V+DE D+ML+       +Q I    P  +Q 
Sbjct: 173 CPHIVVATPGRLNALARDKVLDAKNVKHFVLDECDKMLEQLDMRRDVQEIFRTTPHHKQV 232

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT+  +++   + F+ NP  I V+  +               + SK   L +    
Sbjct: 233 MMFSATLAKDIRITCKKFMANPLEIFVDDETKLTLHGLQQHYVKLEEVSKNKKLSEL--L 290

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF       + L   L    F   +IH  + Q  R+K  + FK    +++V
Sbjct: 291 DTLEFNQVVIFVKSVARAIELDKLLVSCNFPSISIHSGLQQEERIKRYTAFKAFEKRILV 350

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+  RG+D+  V  V N+D P  A++Y+HR+GR GR G  G A T V+ + D   + A
Sbjct: 351 ATDIFGRGIDVERVNIVINYDCPPDADSYLHRVGRAGRFGTKGLAITFVSSDSDQHVMGA 410

Query: 360 IEKLIEKKVDWLNGDLS 376
           I+   E  V  L   + 
Sbjct: 411 IQSRFEVAVPELPDHID 427


>gi|157111113|ref|XP_001651396.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108878542|gb|EAT42767.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 603

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 113/392 (28%), Positives = 201/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADL--GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           +F  L   +S   + A+ + G+ K T IQ K IP +L+  D+ G A+TG+GKT +F++P+
Sbjct: 109 EFETLRGKVSDNTLKAIAEMGFTKMTEIQAKAIPPLLEGRDLIGSAKTGSGKTLAFLIPV 168

Query: 60  LTILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K + + R     +I+ PTRELA Q+    ++   +++ T  LL+GG     +N+K
Sbjct: 169 VELINKLQFKPRNGTGVIIISPTRELAMQIFGVLKELMAHHHHTYGLLMGGASRHTENEK 228

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G ++++ TPGR +         L  N++ LVIDE DR+L++GF   ++ I S++P  
Sbjct: 229 LGKGLNIVVATPGRLLDHLKGTPNFLFKNLQCLVIDECDRILEIGFEEDMKQIISILPKK 288

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T   +++ +  L++           T  T+           S+K  L+  
Sbjct: 289 RQTMLFSATQTSRTEELGKLALKSEPIYVGVDDHKTEATVTGLEQGYIVCPSEKRLLVLF 348

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V             V +IHG   Q  R  +   F      
Sbjct: 349 TFLKKNRKKKVMVFFSSCLSVKYHHELFNYIDLPVNSIHGKQKQAKRTSVFFQFCNAESG 408

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKH 356
           +++ +D+AARGLDIP V  +  +D PN  + YIHR+GRT R     G A  L+  E+++ 
Sbjct: 409 ILLCTDVAARGLDIPAVDWIVQYDPPNDTKEYIHRVGRTARGENICGHALLLLRPEEVEF 468

Query: 357 IDAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
           +  +++  +  ++        ++ +   LE +
Sbjct: 469 LKYLKQA-KVPLNEFEFSWSKIADIQLQLENL 499


>gi|271500546|ref|YP_003333571.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270344101|gb|ACZ76866.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
          Length = 457

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 132/373 (35%), Positives = 212/373 (56%), Gaps = 9/373 (2%)

Query: 2   DFADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            FA+L  L+ + +  + + GY+  TPIQ   +P +L   DV   A+TG+GKTA+F L +L
Sbjct: 3   SFAELNALAAEQLTTLNELGYLSMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             L+ G+ + +    L+L PTRELA QVA+   +  +       L++ G +PF  Q   L
Sbjct: 63  QHLDAGQFKTQS---LVLCPTRELADQVANELRRLARGMPNIKVLVLCGGVPFSIQRDSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +++ TPGR+LDH  +  + ++ ++ LV+DEADRMLDMGF   I  +    P  RQ
Sbjct: 120 IHAPHIIVATPGRLLDHLKKETVSLDALQTLVLDEADRMLDMGFADAIDEVIHHAPAERQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  + +  +S    ++P  IE++T     + +       Y         L Q L
Sbjct: 180 TLLFSATWPEAIAAISRRIQRDPLVIEIDTV----DELPAVEQQFYEVSRNGKLDLLQKL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S++   + ++FCN KK+   +  +L     SV A+HG+++QR R + L  F  G+ +++
Sbjct: 236 LSREQPASCVVFCNTKKDCQAVYDALTHSNQSVLALHGDMEQRDRDQTLVRFANGSSRVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +L A E+ +  +A
Sbjct: 296 VATDVAARGLDIKALEMVINYELSWDPEVHVHRIGRTARAGEQGLAISLCAPEEAQRANA 355

Query: 360 IEKLIEKKVDWLN 372
           +E++++ K+ W  
Sbjct: 356 LEEMLKMKLTWHP 368


>gi|58266632|ref|XP_570472.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134110998|ref|XP_775963.1| hypothetical protein CNBD3700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74685735|sp|Q5KIK3|DRS1_CRYNE RecName: Full=ATP-dependent RNA helicase DRS1
 gi|50258629|gb|EAL21316.1| hypothetical protein CNBD3700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226705|gb|AAW43165.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 808

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 141/485 (29%), Positives = 227/485 (46%), Gaps = 42/485 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++ A+    +  PTPIQ + IPL L   D+ G A TG+GKTA+F++P+L 
Sbjct: 223 SFTAMNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPILE 282

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG----KNYNLTVALLIGGIPFEAQNK 117
            L             +L         V               ++  ALL+GG+   AQ  
Sbjct: 283 RLCYRDRGKGGAACRVLVLCPTRELAVQCEAVGKALAEKGGLDVRFALLVGGLSLNAQAH 342

Query: 118 KLERGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            L    D+LI TPGR++DH  N     ++ +++LVIDEADRML+ GF   ++ I    P 
Sbjct: 343 TLRTLPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEAGFTDELEEIIKACPR 402

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           +RQT+LFSATMTD + ++ +  L  P R+ V+   +TA  +   FV   +  S+  +LL 
Sbjct: 403 SRQTMLFSATMTDSVDELVKLSLDKPIRVFVDPKRNTARGLTQEFVRIRSDDSRSPSLLA 462

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
              ++       IIF   K     +       G     +HGN+ Q  R++ L++FK GT+
Sbjct: 463 LCKRTIREKC--IIFFRSKALAHQMRIVFGLFGLKAAELHGNLTQEQRLQALNDFKAGTV 520

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             ++A+DLA+RGLDI  V  V N+D+P +   Y HR+GRT RAGR G++ +LV + D K 
Sbjct: 521 DYLLATDLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSVSLVGEADRKM 580

Query: 357 IDAIEK------------------LIEKKVDWLNGDLSSLNPPLEKIDIAQH---NHARK 395
           + A  K                   +++K++    D+  +    ++  + +       + 
Sbjct: 581 LKAAIKQAEADQVRHRIIPSEAVTAMKEKLEEFKDDIQEILKEEKEEKLLRQADMEIKKG 640

Query: 396 NNPIPQKSTGFDRRKKN-YSSQKSHIPLKESEK-------------ISKLQQDIQENDAD 441
            N +  ++  F R  +  + S K     K + K               K ++ ++    D
Sbjct: 641 QNMVEHEAEIFSRPARTWFQSGKEKQASKSAGKDAYVGSFPSTGKSAEKEKEKLKRGKYD 700

Query: 442 SLGFR 446
            L  R
Sbjct: 701 GLSRR 705


>gi|224143128|ref|XP_002324856.1| predicted protein [Populus trichocarpa]
 gi|222866290|gb|EEF03421.1| predicted protein [Populus trichocarpa]
          Length = 428

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 92/376 (24%), Positives = 159/376 (42%), Gaps = 3/376 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ +++D+G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 49  FRDFLLKPELLRSIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 108

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V                   + F  Y  +  + V      +       K E  
Sbjct: 109 IEPTSGQVIALVLCHTRELAYQICHEFERFSTYLPDTKVAVFYGGVNVKTHKDLLKNECP 168

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L N    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 169 HVVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMM 228

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  I V+  +               +  K        L   
Sbjct: 229 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNR--KLNDLLDA 286

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L +  F    IH  + Q  R+     FKEG  +++VA+
Sbjct: 287 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVAT 346

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKHIDAIE 361
           DL  RG+DI  V  V N+D+P+ A+ Y+HR+GR GR G  G A T V+   D   ++ ++
Sbjct: 347 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQ 406

Query: 362 KLIEKKVDWLNGDLSS 377
           +  E  +  L   + +
Sbjct: 407 ERFEVDIKELPEQIDT 422


>gi|194367446|ref|YP_002030056.1| ATP-dependent RNA helicase RhlB [Stenotrophomonas maltophilia
           R551-3]
 gi|194350250|gb|ACF53373.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 574

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 128/408 (31%), Positives = 213/408 (52%), Gaps = 8/408 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L P +   +  AG+ + TPIQ  T+P+ L   DV G AQTGTGKT +F++ ++
Sbjct: 9   LTFSSFELHPALQAGLEGAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVV 68

Query: 61  T----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                       +   PR LIL PTRELA Q+  +  K+G +  L  AL+ GG+ ++ Q 
Sbjct: 69  NRLLTRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGSDLGLRFALVYGGVDYDKQR 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIE-ILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L++G DV+I TPGR++D+  + K++  +   I V+DEADRM D+GFI  I+ +   +P
Sbjct: 129 EILQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                     + T   + +   +    +  ++   + T           +    +K   L
Sbjct: 189 ERTTRQTLLFSATLSHRVLELAYEHMNEPQKLVVEAETITAARVRQRIYFPADDEKI-PL 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L S+      ++F N K  V  +  SLEK G+ V  + G++ Q+ R  +L+ F++G 
Sbjct: 248 LLGLLSRSEGARTMVFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLLNRFQKGQ 307

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  + +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 308 LEILVATDVAARGLHIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367

Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            +  IE  IE+K+  + +  +L +  P  E+   A       N  + Q
Sbjct: 368 GLPDIEAYIEQKIPSEPVTKELLTPLPRPERPAPAAGEDGEDNESVGQ 415


>gi|193290168|ref|NP_001123270.1| pitchoune [Nasonia vitripennis]
          Length = 643

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 114/392 (29%), Positives = 198/392 (50%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            F+ L   +    + A+ + G+   T IQ  +IP +L+  D+ G A+TG+GKT SF++P 
Sbjct: 140 SFSTLKDKVCENTLKAIAEMGFTDMTEIQAMSIPPLLEGRDLVGAAKTGSGKTLSFLIPA 199

Query: 60  LTILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K +   R     +I+ PTREL+ Q     ++  K +  T  LL+GG   + + +K
Sbjct: 200 VELIYKLKFMPRNGTGCIIISPTRELSMQTFGVLKELMKYHYHTYGLLMGGASRQTEAQK 259

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G ++++ TPGR +    N    L  N++ L+IDEADR+LD+GF   ++ I +++P  
Sbjct: 260 LSKGVNIVVATPGRLLDHLQNTPDFLYKNLQCLIIDEADRILDIGFEEELKQIINILPKR 319

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T + + ++   ++               T+E       A  S+K  LL  
Sbjct: 320 RQTMLFSATQTKKTEALTTLAVKKEPVYVGVDDEKEKATVEGLEQGYVACPSEKRFLLLF 379

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V +IHG   Q  R      F      
Sbjct: 380 TFLKKNRQKKVMVFFSSCMSVKYHHELLNYIDLPVMSIHGKQKQTKRTTTFFQFCNAQSG 439

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
           +++ +D+AARGLDIPDV  +  +D P+  + YIHR+GRT R  G  G A  ++  E++  
Sbjct: 440 ILLCTDVAARGLDIPDVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGF 499

Query: 357 IDAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
           +  +++     V+        ++ +   +EK+
Sbjct: 500 LRYLKQA-RVPVNEFEFSWNKIADIQLQMEKL 530


>gi|156550989|ref|XP_001604385.1| PREDICTED: similar to RE48840p [Nasonia vitripennis]
          Length = 1378

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 114/392 (29%), Positives = 198/392 (50%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            F+ L   +    + A+ + G+   T IQ  +IP +L+  D+ G A+TG+GKT SF++P 
Sbjct: 206 SFSTLKDKVCENTLKAIAEMGFTDMTEIQAMSIPPLLEGRDLVGAAKTGSGKTLSFLIPA 265

Query: 60  LTILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K +   R     +I+ PTREL+ Q     ++  K +  T  LL+GG   + + +K
Sbjct: 266 VELIYKLKFMPRNGTGCIIISPTRELSMQTFGVLKELMKYHYHTYGLLMGGASRQTEAQK 325

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G ++++ TPGR +    N    L  N++ L+IDEADR+LD+GF   ++ I +++P  
Sbjct: 326 LSKGVNIVVATPGRLLDHLQNTPDFLYKNLQCLIIDEADRILDIGFEEELKQIINILPKR 385

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T + + ++   ++               T+E       A  S+K  LL  
Sbjct: 386 RQTMLFSATQTKKTEALTTLAVKKEPVYVGVDDEKEKATVEGLEQGYVACPSEKRFLLLF 445

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V +IHG   Q  R      F      
Sbjct: 446 TFLKKNRQKKVMVFFSSCMSVKYHHELLNYIDLPVMSIHGKQKQTKRTTTFFQFCNAQSG 505

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
           +++ +D+AARGLDIPDV  +  +D P+  + YIHR+GRT R  G  G A  ++  E++  
Sbjct: 506 ILLCTDVAARGLDIPDVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGF 565

Query: 357 IDAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
           +  +++     V+        ++ +   +EK+
Sbjct: 566 LRYLKQA-RVPVNEFEFSWNKIADIQLQMEKL 596


>gi|153871201|ref|ZP_02000433.1| ATP-dependent RNA helicase DbpA [Beggiatoa sp. PS]
 gi|152072333|gb|EDN69567.1| ATP-dependent RNA helicase DbpA [Beggiatoa sp. PS]
          Length = 466

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 141/413 (34%), Positives = 222/413 (53%), Gaps = 22/413 (5%)

Query: 1   MD---FADLGLSPKV----VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTA 53
           M+   F+ L   P++    +  +   GY   TPIQ +++P +L+  DV   A+TG+GKTA
Sbjct: 1   MNTSPFSALAFKPEIKQAMLANLESIGYSNMTPIQAESLPSILKNQDVIAQAKTGSGKTA 60

Query: 54  SFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPF 112
           +F + +L+ L     +V+    L+L PTRELA QV     +  +       L + G  P 
Sbjct: 61  AFGIGLLSKLNAKNYQVQA---LVLCPTRELAEQVGQEIRRLARFTQNVKLLSLCGGKPI 117

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q   L  GA +++ TPGRI DH  +G L + N   LV+DEADRMLDMGF   + +I S
Sbjct: 118 APQRDSLAHGAHIIVGTPGRIQDHLRKGSLNLKNAHTLVLDEADRMLDMGFYDDMMDIIS 177

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +P  RQTLLFSAT  D + ++S    + P  I+V +  S +E  +  +     Q+ K+ 
Sbjct: 178 YLPKKRQTLLFSATFPDSIVQMSHAIQKQPVNIQVESLHSYSEIEQRFYQVKQPQHRKEA 237

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            +      +    ++ +IFCN K     +   L+K G+   AIHG+++Q+ R ++L  F 
Sbjct: 238 VMTLL---AHYQPESTVIFCNTKLQCQEIATQLKKNGYYAIAIHGDLEQKERDQVLLRFA 294

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
             +  ++VA+D+AARGLDI D+  V N+++P   + +IHRIGRTGRAG+ G A +L    
Sbjct: 295 NKSCSILVATDVAARGLDINDLQVVINYELPGSQDIHIHRIGRTGRAGKKGLALSLYTAS 354

Query: 353 DIKHIDAIEKLIEK-----KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           +   I+AI ++  +      ++ L    +   PP+  I I   +  +KN   P
Sbjct: 355 EQHKIEAIAEIQNQPCRCDALESLEDKGTLRPPPMITICI---HGGKKNKMRP 404


>gi|91084021|ref|XP_975350.1| PREDICTED: similar to pre-mRNA-splicing ATP-dependent RNA helicase
           PRP28 [Tribolium castaneum]
 gi|270008001|gb|EFA04449.1| hypothetical protein TcasGA2_TC014753 [Tribolium castaneum]
          Length = 762

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 122/430 (28%), Positives = 207/430 (48%), Gaps = 37/430 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + G+  +++  +   GY +PTPIQ + IP+ +Q  D+ G+A+TG+GKT +F++P+L+
Sbjct: 337 SWKESGIQKELLEIIDKVGYKEPTPIQRQAIPIGMQNRDIIGVAETGSGKTLAFLIPLLS 396

Query: 62  ILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            ++      +     + P  +IL PTRELA Q+ +   K+G+   +   +++GG+  E Q
Sbjct: 397 WIQSLPKIERTEDADQGPYAIILAPTRELAQQIEEETVKFGQPLGIRTVVVVGGLSREEQ 456

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L++N    +V+DEADRM+D+GF   +Q I   +P
Sbjct: 457 GFRLRMGCEIVIATPGRLIDVLENRYLVLNQCTYIVMDEADRMIDLGFEADVQKILEYMP 516

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            T            ++   + N  +  ++  + T +                        
Sbjct: 517 VTNLKPDSEEAEDSKIILANYNSKKKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSI 576

Query: 215 -ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            +  E      +               S+      IIF NQKK    L   LEK G++ C
Sbjct: 577 GKPTERVEQIVHIMTENDKRKKLMEYLSKGVDPPIIIFVNQKKGADVLAKGLEKLGYNAC 636

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            +HG   Q  R   L++ K G   ++VA+D+A RG+DI DV  V N+D+    E+Y HRI
Sbjct: 637 TLHGGKGQEQREYALASLKSGAKDILVATDVAGRGIDIKDVSVVINYDMAKTIEDYTHRI 696

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           GRTGRAG+ G A +    +D      +++++      L+  +S+  P L      Q    
Sbjct: 697 GRTGRAGKSGVAISFCTNDDSALFYDLKQML------LSSPVSTCPPELMNHPECQ---I 747

Query: 394 RKNNPIPQKS 403
           R N P  ++ 
Sbjct: 748 RPNQPKRRRD 757


>gi|320527333|ref|ZP_08028518.1| DEAD/DEAH box helicase [Solobacterium moorei F0204]
 gi|320132357|gb|EFW24902.1| DEAD/DEAH box helicase [Solobacterium moorei F0204]
          Length = 455

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 106/456 (23%), Positives = 189/456 (41%), Gaps = 18/456 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L    +  +    + +PTPIQ + IP  L+  DV G++ TG+GKT ++++P++ 
Sbjct: 3   KFEDFNLKDTTMAFIEKNHFKQPTPIQEQVIPSALRGKDVIGLSSTGSGKTHAYLIPIME 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +   ++  T           ++A    +      + + +       + +  +  +
Sbjct: 63  KVDPNKDEAQVIITAPTRELATQIYEMAKVMTEVIPELRVRLYVGGRERSKDVEQLEKSQ 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+           N G L ++   +LV+DEAD  L+ GF+  I      +    Q L
Sbjct: 123 PHIVVGTPGRIKDLFLNGGALRIDKASMLVVDEADMTLEYGFLDEIDAFAGRLGDHLQML 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSATM D+L+     ++ +P   ++         I+H  V  Y       A     +  
Sbjct: 183 AFSATMPDQLKPFINKYMHHPITYQIGEKVRFNPDIKHVLVPCYHH---SYAETILSILP 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  +IF N ++    +   L K   SV  IHG++  R R + + +        +VA
Sbjct: 240 GFQPYVCLIFANTRQEASVIAEELRKNKVSVSEIHGDLTSRKRKQAMKSISNAEHTYVVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+DI +V H+ +   P   E YIHR GRTGRAG  G  + L  + D + I +++
Sbjct: 300 TDLAARGIDIGEVTHIISCGFPEDLEYYIHRAGRTGRAGSKGTCYALYQESDDQAIRSLQ 359

Query: 362 KLIEKKVDWL--------------NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           K    K D +                 L + +   +KI +       K  P  +K     
Sbjct: 360 KR-GIKFDHVRHRTSGWQILHPYGQRRLKTDDELEKKIAMIMTKKNTKVKPGYKKKRAAA 418

Query: 408 RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSL 443
             + +   ++  I  K  E+   + ++    D + L
Sbjct: 419 IDRVHRQKKREMIRSKIREEKKAMYKERARKDREGL 454


>gi|171683441|ref|XP_001906663.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941680|emb|CAP67334.1| unnamed protein product [Podospora anserina S mat+]
          Length = 816

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 118/451 (26%), Positives = 204/451 (45%), Gaps = 20/451 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F DL L       +  + +   T IQ   IPL L+ HD+ G A+TG+GKT +F++P + 
Sbjct: 63  KFTDLPLCAATASGLRASHFEVLTDIQKAAIPLALKGHDILGAAKTGSGKTLAFLVPVLE 122

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +++           LI+ PTRELA Q+ +   K G+N+  +  L+IGG   + +  +L 
Sbjct: 123 KLVQAQWTEYDGLGALIISPTRELAVQIFEVLRKIGRNHVFSAGLVIGGKSLKEEADRLG 182

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +          +NN+++LV+DEADR++DMGF   +  +   +P TRQT
Sbjct: 183 RMNILVCTPGRMLQHLDQTAGFDVNNLQMLVLDEADRIMDMGFQSAVDALVEHLPKTRQT 242

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT +  +  ++   L++P+ +  +  + TA               +K         
Sbjct: 243 MLFSATQSKRVSDLARLSLKDPEYVSAHEEAPTATPTNLQQSYIVTPLPEKL-DTLWGFI 301

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC--AIHGNIDQRSRMKILSNFKEGTIQL 298
             +     I+F +  K V  +  S ++    +    +HG   Q  RM+I   F       
Sbjct: 302 RTNLKSKMIVFFSSGKQVRFVYESFKRMQPGISLLHLHGRQKQVGRMEITRKFTSSKYAC 361

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+ ARG+D P V  V   D P  A+ YIHR+GRT R    G+A   +   + K   
Sbjct: 362 LFATDVVARGVDFPAVDWVVQVDCPEDADTYIHRVGRTARYESKGRAVLFLDPSEEKGF- 420

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            + +L +KK+            P+ K+++ +         +  +S  F      Y  QK+
Sbjct: 421 -LSRLEQKKI------------PITKVNVREGKKTSIKGEL--QSQCFQSADLKYLGQKA 465

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNM 449
            I    S  + K +   + +  D  G+  ++
Sbjct: 466 FITYVRSIYVQKDKDVFKFSKMDLDGYAASL 496


>gi|268565781|ref|XP_002639546.1| C. briggsae CBR-VBH-1 protein [Caenorhabditis briggsae]
          Length = 638

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 130/393 (33%), Positives = 201/393 (51%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D G  P V+  V  +GY KPTP+Q  +IP +L   D+   AQTG+GKTA+F+LP++ 
Sbjct: 125 NFSDAGFGPAVMENVTRSGYTKPTPVQKHSIPTLLFNRDLMSCAQTGSGKTAAFLLPIIQ 184

Query: 62  ILEKGRA------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIG 108
            +  G              R   P  L+L PTRELA Q+     K+    N  T  L  G
Sbjct: 185 HIMAGGPDMIKTPTFNNGRRTYYPSALVLSPTRELAIQIHKEAAKFSYKTNLQTAILYGG 244

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
              +  Q  +L  G  +LI TPGR++D   +G + ++    LV+DEADRMLDMGF P I+
Sbjct: 245 RENYRDQVNRLRSGVHILIATPGRLIDIIEQGFIGLSGCRYLVLDEADRMLDMGFEPQIR 304

Query: 169 NIT---SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
            I          R T +FSAT   E+Q ++++FL+            +        +   
Sbjct: 305 KIVGQGMPPKTARTTAMFSATFPKEIQLLAKDFLKENYVFLAVGRVGSTSENIEQRLLWV 364

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            +  K+  L+  +L ++D     ++F   K+    L + L +Q     +IHG++ Q  R 
Sbjct: 365 NEMEKRQNLMD-ILMNEDATNLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERE 423

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P  ++ Y+HRIGRTGR G  G A
Sbjct: 424 RNLEMFRSGQFPILVATAVAARGLDIPNVRHVVNYDLPGDSDEYVHRIGRTGRCGNLGIA 483

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            +    ++      ++ LI +    +   L  +
Sbjct: 484 TSFFNDKNRGIGRDLKTLIMEANQEVPEWLHQV 516


>gi|90578403|ref|ZP_01234214.1| putative ATP-dependent RNA helicase DbpA [Vibrio angustum S14]
 gi|90441489|gb|EAS66669.1| putative ATP-dependent RNA helicase DbpA [Vibrio angustum S14]
          Length = 461

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 132/367 (35%), Positives = 211/367 (57%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P ++  +   GY   TPIQ +++PL+L+  DV    +TG+GKTA+F L +L  
Sbjct: 6   FSSLNLNPDLLSNLTSLGYDAMTPIQAQSLPLILEGKDVIAQGKTGSGKTAAFGLGLLQN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+  R RV+   TL+L PTRELA QVA    +  +  +    L +  G PF  Q   LE 
Sbjct: 66  LKVKRFRVQ---TLVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGTPFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ +H  +G L ++ +  LV+DEADRML+MGF   +  IT + P  RQTL
Sbjct: 123 GAHIIVGTPGRVEEHVRKGFLCLDELNTLVLDEADRMLEMGFQDSLDAITDVAPSDRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   ++  +++  ++NP  ++V +     +           + +       +LL S
Sbjct: 183 LFSATYPTQIASIAKRIMRNPVEVKVES---NHDNSSISQHFYKVESNDDRLRAVRLLLS 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ +IFCN K+    +   LE  GFS  A+HG+++QR R + L  F   +  ++VA
Sbjct: 240 QHRPESCVIFCNTKREAQEISDDLEDYGFSSIALHGDLEQRERDRTLVLFANKSRSILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++  V N+ +    E ++HRIGRTGRAG  G A +L + ++   +  +E
Sbjct: 300 TDVAARGLDIDNLDAVINYHLARDTEVHVHRIGRTGRAGSKGIACSLFSDKEHYKVALLE 359

Query: 362 KLIEKKV 368
             +++ +
Sbjct: 360 DYLDRPI 366


>gi|195170555|ref|XP_002026077.1| GL16096 [Drosophila persimilis]
 gi|194110957|gb|EDW33000.1| GL16096 [Drosophila persimilis]
          Length = 554

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 123/398 (30%), Positives = 201/398 (50%), Gaps = 22/398 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--ML 60
           F ++      +  +    Y +PTPIQ +  P+ L  H++ GIA+TG+GKT +F+LP  + 
Sbjct: 105 FEEVCFPDYCMDEIRRQRYSEPTPIQAQAWPIALSGHNLVGIAKTGSGKTLAFILPAILH 164

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              ++   R   P  L+L PTRELA Q+      +G +  +    + GG P   Q   L+
Sbjct: 165 INGQQPLQRGEGPIALVLAPTRELAQQIQSVANDFGSSAFVRNTCVFGGAPRSKQASDLK 224

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG +++I TPGR+LD    G   +     LV+DEADRMLDMGF P I+ +   +   RQ 
Sbjct: 225 RGVEIIIATPGRLLDFLQSGATNLRRCTYLVLDEADRMLDMGFEPQIRKVLGQIRPDRQI 284

Query: 181 LLFSATMTDELQKVSENFLQNPKRI--------------------EVNTPSSTAETIEHC 220
           L++SAT   E+++++E+FL +  ++                      +   +        
Sbjct: 285 LMWSATWPKEVRQLAEDFLGSYIQVSRVQILRIQIETLSARSTSGPWSCRPNHNIRQYVE 344

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
               + + +K   LL  +          IIF   KK    L   +   G SV +IHG+  
Sbjct: 345 VCGEHEKSAKLKDLLSHIYDQAHAPGKIIIFVATKKKTDELARFINAFGVSVGSIHGDKS 404

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q  R  +L++F+ G   ++VA+D+AARGLD+  + +V NFD P  +E+YIHRIGRTGR  
Sbjct: 405 QMDRDSVLNDFRSGRANILVATDVAARGLDVDGIKYVINFDYPQSSEDYIHRIGRTGRKL 464

Query: 341 RHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
             G ++    +++ +   A+  ++ +    +N +L +L
Sbjct: 465 SKGTSYAFFTRKNARCARALIDILREANQNVNPELENL 502


>gi|304395420|ref|ZP_07377303.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304356714|gb|EFM21078.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 460

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 128/373 (34%), Positives = 205/373 (54%), Gaps = 9/373 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY   TP+Q  T+P +LQ  DV   A+TG+GKTA+F + +L 
Sbjct: 4   FSTLNSLPDSQLDNLREMGYTSMTPVQAATLPAILQGRDVRAQAKTGSGKTAAFGIGLLH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++  R + +    LIL PTRELA QV +   +  +       L +  G P  AQ   L 
Sbjct: 64  HIDSTRFQTQ---ALILCPTRELADQVGNVLRQLARFTRNIKVLTLCGGQPMSAQRDSLV 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILDH NR  L ++ +  LV+DEADRML+MGF+  ++ I    P +RQT
Sbjct: 121 HPPHIVVGTPGRILDHINRENLKLDQLNTLVLDEADRMLEMGFLNDMETIIEATPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D +  +S  F    +R  ++  +     +       +     +   L   L 
Sbjct: 181 LLFSATWPDGITAISTRF----QRDALSVVTEEVSELPSIDQQFFEASHNEKLGLLIALL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN K+   ++  +L  +  S   +HG+++QR R ++L  F  G+ +++V
Sbjct: 237 SDRQPSSCVVFCNTKRECDDVAAALNARDISALPLHGDLEQRDRERVLIRFANGSGRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+ +    E ++HRIGRT RAG HG A +LVA +++    A+
Sbjct: 297 ATDVAARGLDIKSLAMVVNYQLAWDPEIHLHRIGRTARAGEHGVAVSLVAADEMARAHAL 356

Query: 361 EKLIEKKVDWLNG 373
           E  +++K+ W++ 
Sbjct: 357 EDFLQQKLPWVSA 369


>gi|317480121|ref|ZP_07939231.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
 gi|316903668|gb|EFV25512.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
          Length = 405

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 130/409 (31%), Positives = 219/409 (53%), Gaps = 10/409 (2%)

Query: 24  PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRE 83
             PIQ K+IP++L+  D+  +AQTGTGKTA+++LP+L  L +G         +++ PTRE
Sbjct: 1   MHPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPILNKLSEGGHPADAINCIVMAPTRE 60

Query: 84  LAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNKKLERGADVLICTPGRILDHFNRG 140
           LA Q+    E +     ++   + GG     FE Q + L  GADV+I TPGR++ H + G
Sbjct: 61  LAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKRGLTLGADVVIATPGRLIAHLSLG 120

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200
            + ++ +   ++DEADRMLDMGF   I  I   +P  RQT++FSATM  ++Q+++ N L 
Sbjct: 121 YVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFLPKERQTIMFSATMPAKIQQLAGNILN 180

Query: 201 NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVN 260
           NP  +++       + ++      Y  Y  +   + + L +++T +  IIF + K  V  
Sbjct: 181 NPAEVKLAVSKPAEKIVQA----AYVCYENQKLGIIRSLFAEETPERVIIFASSKLKVKE 236

Query: 261 LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNF 320
           +  +L++   +V  +H +++Q  R +++  FK G I ++VA+D+ ARG+DI D+  V N+
Sbjct: 237 VTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVARGIDIDDIRLVINY 296

Query: 321 DVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNP 380
           DVP+ +E+Y+HRIGRT RA   G A T V++++  +   IEK +++ +  +         
Sbjct: 297 DVPHDSEDYVHRIGRTARANNDGVAITFVSEKEQGNFKNIEKFLDRDIYKIPVPEELGEA 356

Query: 381 PLEK---IDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESE 426
           P  K    D  +           +   G +  K      K      E +
Sbjct: 357 PEYKPRAFDGGRRGGRGNGRKPGENKNGRNNSKGGKPRAKRPQNGGEKK 405


>gi|91179152|gb|ABE27760.1| pl10-like protein [Chlamys farreri]
          Length = 760

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 140/396 (35%), Positives = 210/396 (53%), Gaps = 20/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F +  L   +   ++ + Y KPTP+Q  +IP+VL + D+   AQTG+GKTA+F++P+  
Sbjct: 279 SFEETELGEIIRNNIVLSKYTKPTPVQKYSIPIVLSKRDLMACAQTGSGKTAAFLVPVLN 338

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                             +   R + P  LIL PTRELA+Q+ D   K+     +   ++
Sbjct: 339 RVYDNGPGDIPTQNNQQGRYSRRKQYPVALILAPTRELASQIYDEARKFAYRSRVRPCVV 398

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG    AQ + L+RG  +L+ TPGR++D   RGK+ ++  + LV+DEADRM DMGF P 
Sbjct: 399 YGGADIGAQIRDLDRGCHLLVATPGRLVDMIERGKIGLDYCKFLVLDEADRMSDMGFEPQ 458

Query: 167 IQN----ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T     TRQTL+FSAT   E+Q ++ +FL N   + V    ST+E I    V
Sbjct: 459 IRRIVEKDTMPPSGTRQTLMFSATSPKEIQILARDFLDNYIFLAVGRVGSTSENI-TQKV 517

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
               +  K+  LL  L  +       + F   KK    L   L  +G+   +IHG+  Q+
Sbjct: 518 VWVEEGDKRSFLLDLLNAAAGPEALTLTFVETKKGADALEDFLIVEGYPATSIHGDRSQK 577

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDIP+V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 578 EREEALRQFRNGDRPILVATAVAARGLDIPNVRHVVNFDLPSDIEEYVHRIGRTGRVGNL 637

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   +++   I  +  L+ +    +   L S+
Sbjct: 638 GLATSFFNEKNKNIIRDLMDLLVEAHQEVPSWLESM 673


>gi|195344854|ref|XP_002038991.1| GM17282 [Drosophila sechellia]
 gi|194134121|gb|EDW55637.1| GM17282 [Drosophila sechellia]
          Length = 822

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 125/433 (28%), Positives = 203/433 (46%), Gaps = 34/433 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + G   +++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L+
Sbjct: 395 SWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLS 454

Query: 62  ILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            ++            + P  +I+ PTRELA Q+ +   K+G+   +   +++GG+  E Q
Sbjct: 455 WIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQ 514

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 515 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 574

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            T           +     +    +  ++  + T +                        
Sbjct: 575 VTNLKPDTEEAEDETKLMENFYSKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSV 634

Query: 215 -ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            +  E      Y             + S+      IIF NQKK    L   LEK G++ C
Sbjct: 635 GKPTERTEQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSC 694

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            +HG   Q  R   L+  K G   ++VA+D+A RG+DI DV  V N+D+    E+Y HRI
Sbjct: 695 TLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRI 754

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           GRTGRAG+ G A + V K+D      +++ +          +S+  P L     AQH   
Sbjct: 755 GRTGRAGKTGCAISFVTKDDSALFYDLKQCVSA------SPVSTCPPELMNHPEAQHKPG 808

Query: 394 RKNNPIPQKSTGF 406
                  ++   F
Sbjct: 809 TVVTKKRREEKIF 821


>gi|57529497|ref|NP_001006568.1| ATP-dependent RNA helicase DDX19B [Gallus gallus]
 gi|53127478|emb|CAG31122.1| hypothetical protein RCJMB04_2i24 [Gallus gallus]
          Length = 479

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 181/382 (47%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 93  SFEELHLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 152

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E G    + P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 153 LSRVEPGN---KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 209

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 210 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRDCQ 269

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K  AL    +
Sbjct: 270 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNSRDEKFRALC--NI 327

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   ++FC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 328 YGAITIAQAMVFCHTRKTAGWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 387

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 388 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAINMVDSKH 447

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 448 SMNILNRIQEHFSKKINKLDTD 469


>gi|322787030|gb|EFZ13254.1| hypothetical protein SINV_10425 [Solenopsis invicta]
          Length = 775

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 210/389 (53%), Gaps = 4/389 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  V+  +L  GY  PTPIQ KTIPL L+  DV  +A+TG+GKTA F++P+   
Sbjct: 38  FQSMALSFPVLKGILKRGYKIPTPIQRKTIPLALEGRDVVAMARTGSGKTACFLIPLFEK 97

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  +A+    R LIL PTRELA Q     ++ G+      ++++GG   + Q   +   
Sbjct: 98  LKARQAKAGA-RALILSPTRELALQTLKFIKELGRFTGFKASVILGGDSMDDQFNAIHGN 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR L       L + N+E +V DEADR+ +MGF   IQ I + +P +RQTLL
Sbjct: 157 PDIIVATPGRFLHICVEMDLQLKNVEYVVFDEADRLFEMGFGEQIQEIVNRLPESRQTLL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L   ++  L +P  + ++  S   E +   F  T     K   LL  L +  
Sbjct: 217 FSATLPKILVDFAKAGLSDPVLLRLDVESKLPEGLSLSF-ITCRPEEKLAVLLSLLKRII 275

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF     +V  +   L+K G S   I+ N+D  +R    + F+ G +++++ +
Sbjct: 276 KPESQTIIFVETMHHVEYIHQILDKAGISNTFIYSNLDPSARKINAAKFQMGKVRVLIVT 335

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP +  V NF+ P +++ ++HR+GR  RAGR G A+ +V+ ++  ++  +  
Sbjct: 336 DVAARGIDIPHLDFVINFNFPAKSKLFVHRVGRCARAGRAGTAYNIVSSDEYPYLLDLHL 395

Query: 363 LIEKKVDWLN--GDLSSLNPPLEKIDIAQ 389
            + + +  +   G   ++   + K+  A 
Sbjct: 396 FLGRPLTIVPTTGSTENMESAVGKLPQAM 424


>gi|194759123|ref|XP_001961799.1| GF14747 [Drosophila ananassae]
 gi|190615496|gb|EDV31020.1| GF14747 [Drosophila ananassae]
          Length = 424

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 99/394 (25%), Positives = 171/394 (43%), Gaps = 14/394 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 43  FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE           +                               G    + +       
Sbjct: 103 LEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGLAITKDEETLKSGT 162

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM-GFIPYIQNITSLVPFTRQTL 181
             +++ TPGRIL      KL + +++  V+DE D+ML+       +Q I    P  +Q +
Sbjct: 163 PHIVVGTPGRILALIRNKKLNLKHLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHGKQVM 222

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT++ +++ V + F+Q+P  + V+  +               +  K   L +     
Sbjct: 223 MFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFEL--LD 280

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  +IF    +  V L   L +Q F    IH  + Q  R+     FK+   +++VA
Sbjct: 281 VLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVA 340

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAI 360
           ++L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ +
Sbjct: 341 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEV 400

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           +   +  +  L           E+ID++ +   R
Sbjct: 401 QDRFDVNISELP----------EEIDLSTYIEGR 424


>gi|159467789|ref|XP_001692074.1| hypothetical protein CHLREDRAFT_128577 [Chlamydomonas reinhardtii]
 gi|158278801|gb|EDP04564.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 488

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 130/386 (33%), Positives = 196/386 (50%), Gaps = 5/386 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGLS  +       G  +PT +Q   IP +L+  DV G+AQTG+GKTA+F LP+L 
Sbjct: 106 DFKGLGLSEWLCGVCKSLGMSQPTDVQRGCIPAILKGRDVIGLAQTGSGKTAAFALPILQ 165

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L K    V     L+L PTRELA Q+++ F   G    L   ++IGG+  + Q ++L +
Sbjct: 166 ALAKDPYGVF---ALVLTPTRELAVQISEQFRALGAGMRLKELVVIGGVDMQQQARELAK 222

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V++ TPGR      +     M     LV+DEADR+LD  F   ++ I   +P  RQT
Sbjct: 223 RPHVVVATPGRLADWVMSGLAAGMARCRFLVLDEADRVLDSTFEDDLRRILKALPAARQT 282

Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSATMT   +    ++              +  +  E                L  ++
Sbjct: 283 LLFSATMTKSLIALQRQSLADAHVFQAYEGLRTADKLKEEYLFLPAKVKEVYLHHLLTVV 342

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +++ IIF    +    L   LE+ G    A+H    Q+ R+  L+ FK   + L+
Sbjct: 343 LPARKVRSAIIFAGTCRGCHLLSLLLEELGLPAVALHSGKSQKGRLAALARFKSEQVPLL 402

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLDIP V  V NFD+P  A +Y+HR+GRT RAGR G + +LV + D+  + A
Sbjct: 403 LATDVASRGLDIPSVDAVINFDLPMLARDYVHRVGRTARAGRSGWSVSLVTQYDVGLVGA 462

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKI 385
           IE+LI   ++    +   +   + K+
Sbjct: 463 IEELIGHTLEQHVLEEQEVLKGITKV 488


>gi|145300612|ref|YP_001143453.1| ATP-dependent RNA helicase DbpA [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853384|gb|ABO91705.1| ATP-dependent RNA helicase DbpA [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 459

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 146/461 (31%), Positives = 233/461 (50%), Gaps = 25/461 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+ L LSP +   +   GY++ TPIQ +++PLVL   D+   A+TG+GKTA+F L +L 
Sbjct: 5   EFSSLNLSPALQENLTSLGYLQMTPIQAQSLPLVLDGKDLIAKAKTGSGKTAAFALGLLA 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-E 120
            L   R  V+    L+L PTRELA QVA    +  +       + + G    A       
Sbjct: 65  KLNVNRLEVQ---ALVLCPTRELADQVAQEIRRLARALPNVKLVTLCGGTQTAPQSATLG 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA + + TPGRIL H  +G L ++ ++ LV+DEADRMLDMGF   I  + S  P  RQT
Sbjct: 122 FGAHIAVGTPGRILKHLEQGTLELSGLKTLVLDEADRMLDMGFGEEINRVISYAPEQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + + +      +  +R  V     +           Y   + +       L 
Sbjct: 182 LLFSATYPEGIAQ----MSRGVQRNPVEVSVESLHEGSAIEQKLYEVPAGQRLDALTWLL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN K+   ++   L  +GFS  A++G+++QR R ++L  F  G+  ++V
Sbjct: 238 SHYQPASCVVFCNTKRACNDVADHLAAKGFSALALNGDLEQRERDQVLVRFANGSATILV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++G V N+++    E ++HRIGRTGRAG+ G A +L    + + ++ I
Sbjct: 298 ATDVAARGLDIKELGAVINYELTYDPEVHVHRIGRTGRAGQQGLALSLYQPNEAQRVNLI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK---------IDIAQHNHARKNNPI-----PQKSTGF 406
           E+   ++     GDL+ +   ++          ID  +    R  + +          G 
Sbjct: 358 EEY--QQAPMPQGDLAEIGREIKPIAPQMVTLSIDAGRKTKVRAGDILGALTGEGGIAGA 415

Query: 407 DRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
           D  K   S Q S++ +K S   + L++ +QE       +R 
Sbjct: 416 DVGKIQISEQYSYVAVKRSVGSAALKR-LQEGKIKGRTYRA 455


>gi|117164725|emb|CAJ88273.1| putative DEAD/DEAH box helicase [Streptomyces ambofaciens ATCC
           23877]
          Length = 472

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 133/428 (31%), Positives = 213/428 (49%), Gaps = 14/428 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL P ++ A+   G  +P PIQ  T+P  L   DV G A+TG+GKT +F L +L 
Sbjct: 41  SFDSLGLPPALLKAMTGLGVTRPFPIQAATLPDALAGRDVLGRARTGSGKTLAFGLALLA 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                RA  + P  L+L  TRELA QV++    Y +  +L +A ++GG+    Q ++L  
Sbjct: 101 RTAGRRADAKRPLALVLVSTRELAQQVSEALAPYARTMDLRLATVVGGLSINRQAEQLRN 160

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+V++ TPGR+ D  +R    ++ + I V+DEAD+M DMGF+P +  I   VP   Q L
Sbjct: 161 GAEVVVATPGRLADLVSRRDCHLDRVRITVLDEADQMCDMGFLPQVTGILDQVPGDGQRL 220

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ ++  + L +P    V+  S +  T+EH  +  +       A        
Sbjct: 221 LFSATLDGDVDQLVRSHLHDPVLASVDPVSGSVATMEHHVLTVHPADKHAVATEIA---- 276

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F + K  V      L   G    A+H    Q  R   L+ F +G + ++VA
Sbjct: 277 -ARDGRVLMFLDTKAGVDRFLRHLRAGGVRAAALHSGKSQPQRTHTLAQFVDGGVTVLVA 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +++AARG+ +  +  V N D P  A++Y+HR GRT RAG+ G+  TLV  +  + ++   
Sbjct: 336 TNVAARGIHVDALDLVVNVDPPADAKDYLHRGGRTARAGQSGRVVTLVTPDQRRDVN--- 392

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           +++ +      G   ++ P              K  P   KS+G +   +   ++    P
Sbjct: 393 RMMSEA-----GIRPTITPVRSGEQRLTDITGAKRPPTAPKSSGGNAPFRGLGTRPGR-P 446

Query: 422 LKESEKIS 429
            KES K S
Sbjct: 447 AKESRKTS 454


>gi|315445551|ref|YP_004078430.1| DEAD/DEAH box helicase [Mycobacterium sp. Spyr1]
 gi|315263854|gb|ADU00596.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
          Length = 505

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 145/433 (33%), Positives = 222/433 (51%), Gaps = 20/433 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LG+  ++V A+ + G      IQ  T+PL L   D+ G A+TG GKT +F +P+L 
Sbjct: 11  TFAQLGVRDEIVRALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLH 70

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGIPFE 113
            +     R    +PR L++ PTREL  QV ++     K          TV  + GG P+E
Sbjct: 71  RITTDTERPLTGIPRALVVVPTRELCIQVYEDLVHASKYLMADDTRKLTVTAIYGGRPYE 130

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L++G DV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+ I   
Sbjct: 131 PQIEALQKGVDVVVGTPGRLLDLAQQGHLQLGGLNVLVLDEADEMLDLGFLPDIERILKQ 190

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ +LFSATM D +  ++  F+  P  I       +A        A  A    K  
Sbjct: 191 IPAKRQAMLFSATMPDPIITLARTFMTQPTHIRAEGVQGSATHDTTEQFAYRAHALDKVE 250

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           ++ ++LQ++      I     K+    +   L ++GF V A+HG++ Q +R K L  F+ 
Sbjct: 251 MVARILQAEGRGATMIFT-RTKRTAQKVADELGERGFRVGAVHGDLGQSAREKALKGFRN 309

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G + ++VA+D+AARG+DI D+ HV NF +P   + Y+HRIGRTGRAG+ G A TLV  ++
Sbjct: 310 GDVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTLVDWDE 369

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST-GFDRRKKN 412
           +     I+K +                P E    + H +   N P     + G   R  +
Sbjct: 370 LPRWSMIDKALGL----------DTPDPAETYSNSPHLYDELNIPTEAGGSIGKPARSAD 419

Query: 413 YSSQKSHIPLKES 425
              ++   P  E 
Sbjct: 420 KPKREPREPRAER 432


>gi|187607828|ref|NP_001120553.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Xenopus (Silurana)
           tropicalis]
 gi|171846295|gb|AAI61488.1| LOC100145707 protein [Xenopus (Silurana) tropicalis]
          Length = 552

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 130/507 (25%), Positives = 227/507 (44%), Gaps = 49/507 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGL  +++ ++ D G+ KPT IQ K IPL L+  D+   A+TG+GKTA++ +P++
Sbjct: 4   LQFHELGLDDRLLKSIADLGWAKPTLIQEKAIPLALEGKDLLARARTGSGKTAAYSIPII 63

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEK--YGKNYNLTVALLIGGIPFEAQN 116
             L + +  V  +  R LIL PT+EL  QV     +       ++ VA + G     AQ 
Sbjct: 64  QNLLQAKMTVSEQAIRVLILVPTKELGQQVQQMIRQLTVYCARDIKVADISGQADISAQR 123

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNI-EILVIDEADRMLDMGFIPYIQNITSLVP 175
             L    D+++ TP R+L H  +  + + +  + LVIDEAD +   GF   ++N+   +P
Sbjct: 124 PILMEKPDIVVGTPSRVLTHMTQQTICVRDTLQALVIDEADLVFSFGFEEDLKNLLCQLP 183

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q+ L SAT ++++Q + E  L NP  +++        +    F     +  K   L 
Sbjct: 184 KIFQSFLMSATFSEDVQALKELVLHNPVTLKLEESQFPDSSQLTQFHIQCEEEDKFLLLY 243

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L  S       IIF N+      L   LE+     C ++  +   SR  I+S F +G 
Sbjct: 244 TLLKLSLIRG-KTIIFVNEVDRSYRLKLFLEQFSIPACVLNSELPIHSRCHIISQFNQGF 302

Query: 296 IQLMVASDLA-------------------------------ARGLDIPDVGHVFNFDVPN 324
              ++A+D                                 +RG+D  +V  V NFD P 
Sbjct: 303 YDYIIATDEHSLADPSVKGRRGEGKKKGGKGQKGQDKEYGVSRGIDFQNVSTVLNFDFPQ 362

Query: 325 RAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP--- 381
             ++YIHR GRT RA   G A T VA  ++  +  +E+ +   V     D   L P    
Sbjct: 363 SVDSYIHRAGRTARANNPGVALTFVAHTELPLLSEVEEALGGGVP----DEHVLKPYRFC 418

Query: 382 LEKIDIAQHNHARKNNPIPQKSTGFDR----RKKNYSSQKSHIPLKESEK-ISKLQQDIQ 436
           +E+++  ++        + +++    R    +++  +S+K     +++ +    L+ D  
Sbjct: 419 MEEVEGFRYRCRDAMRSVTKQAIKEARLKEIKEELLNSEKLKTYFEDNPRDFQLLRHDKP 478

Query: 437 ENDADSLGFRGNMPAFMLPKNRGKLND 463
            + A       N+P +++P     + D
Sbjct: 479 LHPAIVKPHLKNVPEYLIPPALRAVAD 505


>gi|145225254|ref|YP_001135932.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           gilvum PYR-GCK]
 gi|145217740|gb|ABP47144.1| DEAD/DEAH box helicase domain protein [Mycobacterium gilvum
           PYR-GCK]
          Length = 505

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 145/433 (33%), Positives = 222/433 (51%), Gaps = 20/433 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LG+  ++V A+ + G      IQ  T+PL L   D+ G A+TG GKT +F +P+L 
Sbjct: 11  TFAQLGVRDEIVRALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLH 70

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGIPFE 113
            +     R    +PR L++ PTREL  QV ++     K          TV  + GG P+E
Sbjct: 71  RITTDTERPLTGIPRALVVVPTRELCIQVYEDLVHASKYLMADDTRKLTVTAIYGGRPYE 130

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L++G DV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+ I   
Sbjct: 131 PQIEALQKGVDVVVGTPGRLLDLAQQGHLQLGGLNVLVLDEADEMLDLGFLPDIERILKQ 190

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ +LFSATM D +  ++  F+  P  I       +A        A  A    K  
Sbjct: 191 IPAKRQAMLFSATMPDPIITLARTFMTQPTHIRAEGVQGSATHDTTEQFAYRAHALDKVE 250

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           ++ ++LQ++      I     K+    +   L ++GF V A+HG++ Q +R K L  F+ 
Sbjct: 251 MVARILQAEGRGATMIFT-RTKRTAQKVADELGERGFRVGAVHGDLGQSAREKALKGFRN 309

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G + ++VA+D+AARG+DI D+ HV NF +P   + Y+HRIGRTGRAG+ G A TLV  ++
Sbjct: 310 GDVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTLVDWDE 369

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST-GFDRRKKN 412
           +     I+K +                P E    + H +   N P     + G   R  +
Sbjct: 370 LPRWSMIDKALGL----------DTPDPAETYSNSPHLYDELNIPTEAGGSIGKPARSAD 419

Query: 413 YSSQKSHIPLKES 425
              ++   P  E 
Sbjct: 420 KPKREPREPRAER 432


>gi|227549310|ref|ZP_03979359.1| possible ATP-dependent RNA helicase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078629|gb|EEI16592.1| possible ATP-dependent RNA helicase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 430

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 130/390 (33%), Positives = 200/390 (51%), Gaps = 8/390 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   +V  +   G  +P PIQ + IP  L   DV G   TG+GKT +F LPML 
Sbjct: 3   SFADLGLPRPIVNVLAKQGITQPFPIQEEAIPDALAGRDVLGRGPTGSGKTFTFGLPMLA 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L    ++   PR LIL PTRELA Q+ +  +       L +  ++GG+      + L  
Sbjct: 63  RLAGAPSKPGHPRGLILAPTRELATQIRERLDDLAAALGLRLLDVVGGVNINNHLRSLAA 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             DVL+ TPGR  D  ++ KL  +++EI  +DEAD+M DMGF+P ++ +    P   Q L
Sbjct: 123 PVDVLVATPGRAEDLISQRKLFFDHVEITALDEADQMADMGFLPQVRKLLDRTPKGGQRL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  +++K+   ++ +P         ++  T+EH  +    + ++   +    L  
Sbjct: 183 LFSATLDGDVEKLIARYMSDPVTHSTAPVQASVNTMEHYRLLVGDRDARSDVV----LHI 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K  V      L + G +   +HG+  Q +R + L  F +GT  ++VA
Sbjct: 239 GAREGKTIMFMRTKHGVDRQVKKLRRAGINAQGLHGDKGQGARTRALEGFGDGTAPVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV  V + D P   + Y+HR GRT RAG  G   TLV  E  K +   +
Sbjct: 299 TDIAARGIDVDDVSLVVHVDPPAEHKAYLHRAGRTARAGSSGTVVTLVLDEQEKEV---Q 355

Query: 362 KLIEKK-VDWLNGDLSSLNPPLEKIDIAQH 390
           +L+ K  V      +++ +  L KI  A+ 
Sbjct: 356 QLMNKAGVSATPVRVTAESDELAKITGARE 385


>gi|321250096|ref|XP_003191688.1| ATP dependent RNA helicase [Cryptococcus gattii WM276]
 gi|317458155|gb|ADV19901.1| ATP dependent RNA helicase, putative [Cryptococcus gattii WM276]
          Length = 442

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 92/373 (24%), Positives = 161/373 (43%), Gaps = 5/373 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 61  FRDFLLKPELLRAISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQ 120

Query: 63  LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +E     V +       E   ++  +     +                   +      E+
Sbjct: 121 IEPVDGEVSIIILCHTRELAYQIKNEFTRFSKFMTNVRTGVFYGGTPISADQEILANKEK 180

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM-GFIPYIQNITSLVPFTRQT 180
              +++ TPGR +      KL  + ++  V+DE D+ML+       +Q I    P  +Q 
Sbjct: 181 CPHIVVGTPGRTMALVRDKKLNASKVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQV 240

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ +++   + F+Q+P  I V+  +         F     +  K        L 
Sbjct: 241 MMFSATLSKDIRATCKKFMQSPLEIYVDDETKLTLHGLQQFYLKLEEREKNR--KLNDLL 298

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                    IF    +    L   L++  F    IH  + Q  R+     FK    +++V
Sbjct: 299 DNLEFNQVCIFVKSVQRATQLDALLQECNFPSICIHSGLQQAERISRFQQFKAFEKRILV 358

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+  RG+D+  V  V N+D P  A++Y+HR+GR GR G  G A + V+ + D + +  
Sbjct: 359 ATDIFGRGIDVERVNVVINYDAPADADSYLHRVGRAGRFGTKGLAISFVSNDADQEVLQK 418

Query: 360 IEKLIEKKVDWLN 372
           I++     +  L 
Sbjct: 419 IQERFTVAIPTLP 431


>gi|313837601|gb|EFS75315.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2]
 gi|314972540|gb|EFT16637.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3]
          Length = 536

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 144/451 (31%), Positives = 219/451 (48%), Gaps = 21/451 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L 
Sbjct: 34  SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 93

Query: 62  ILEKGRARVR-------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L++ PTRELA QV+ N           V  + GG+ +E 
Sbjct: 94  RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSQNISTAASVRGARVLTVYGGVGYEP 153

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L+ G DV++ TPGR+LD   R  L ++++ I+V+DEAD MLD+GF+P ++N+    
Sbjct: 154 QIDALQAGVDVVVGTPGRLLDLSQRKNLDLSHVHIVVLDEADEMLDLGFLPDVENLIGRT 213

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQT+LFSATM   +         N         + T  T+       Y  +      
Sbjct: 214 PTPRQTMLFSATMPAPI-MALARSQLNRPVHVRAEGADTQATVPDTQQFVYQAHPLDKIE 272

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +   +  +  IIFC  K+    L   L  +GF   AIHG++ Q +R K L  F+ G
Sbjct: 273 IIGRILQANDAEKVIIFCRTKRACQRLSDDLNDRGFKARAIHGDLTQVAREKALKRFRHG 332

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   D+
Sbjct: 333 DVTILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGTKGVAVTLVDWADV 392

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF-DRRKKNY 413
                I+K +  +          L+ P+E    + H +   +  IP+ + G      K  
Sbjct: 393 TRWKLIDKALNLE----------LSEPVETYSTSPHLYT--DLDIPEDARGKIAGAGKGD 440

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLG 444
           + +K            K  +    ND+   G
Sbjct: 441 TEKKGRQHHHSHSSSGKTTRRRSRNDSKDGG 471


>gi|298706016|emb|CBJ29130.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 944

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 128/478 (26%), Positives = 226/478 (47%), Gaps = 17/478 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L +S  ++ AV   GYV PT +Q + +P  L   DVC  A TG+GKTA+F+LP+L  
Sbjct: 309 FQQLNISRPLLRAVEAMGYVTPTSVQQRAVPFALAGRDVCASATTGSGKTAAFLLPILER 368

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP--FEAQNKKLE 120
           L     +V + R +I+ PTREL  Q+        +  ++  AL++GG       + +   
Sbjct: 369 LLYRPKKVAVTRVMIITPTRELGVQIHSMCRSLSQFTDIACALVVGGNKNLKAQEAELRA 428

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   V+      +    N   + M+++EILV+DEADR+L++GF   +  +    P  RQT
Sbjct: 429 RPDIVICTPGRMVDHLTNSASVHMDDVEILVLDEADRLLELGFQEEVAELVKSCPIGRQT 488

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  ++  ++   L  P R++ +  +S  + +   FV       +    +   L 
Sbjct: 489 LLFSATMNTKVDDLASLALNKPVRVKASPMNSAPQRLVQEFVRIRQSREQDREAILLSLL 548

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      I+F + K     L   L   G     +HGN+    R++ L  FK G + ++V
Sbjct: 549 TRTFKTKTIVFFDTKILAHRLNIVLGIAGIRAAELHGNLAMTQRLEALDRFKSGDVTVLV 608

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARGLDI  V  V NF++P  A++YIHR+GRT RAG  G++ TL+ +     +  +
Sbjct: 609 ATDLAARGLDITGVHTVINFEMPRSADSYIHRVGRTARAGCGGRSVTLIGESRRIVMKEV 668

Query: 361 EK------------LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD- 407
            K            + +  +D     +  +   ++ I   +     +   + +     + 
Sbjct: 669 LKTQGEGVEIKSRAVPQSAIDHFRSKIEGMEASVKAILTEEKVEKEERCAMMEADRAVNL 728

Query: 408 -RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
              +K   ++ +   +   ++ ++L ++  + +A +   +      +    RG   D+
Sbjct: 729 VEHQKEIHARPARQWIVSQQRKTELAEE-SKAEAVAQALKAAGKTTIPVPPRGGDADR 785


>gi|289619838|emb|CBI54121.1| unnamed protein product [Sordaria macrospora]
          Length = 825

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 120/450 (26%), Positives = 215/450 (47%), Gaps = 16/450 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F DL L       +  + +   T +Q   IPL L+  D+ G A+TG+GKT +F++P + 
Sbjct: 60  NFTDLPLCEPTASGLRASHFEIMTDVQKAAIPLALKGQDILGAARTGSGKTLAFLVPVLE 119

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +       +     LI+ PTRELA Q+ +   K G+N++ +  L+IGG   + + ++L 
Sbjct: 120 KLYRARWTELDGLGALIISPTRELAVQIFEVLRKIGRNHSFSAGLVIGGKSLKEEAERLS 179

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +          ++N++ILV+DEADR++DMGF   +  +   +P +RQT
Sbjct: 180 RMNILVCTPGRMLQHLDQTAGFDVDNLQILVLDEADRIMDMGFQQAVDALVEHLPKSRQT 239

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT +  +  ++   L++P+ + V+  +++A  +            +K         
Sbjct: 240 LLFSATQSKRVSDLARLSLKDPEYVSVHEAAASATPVNLQQHYIVTPLPEKL-DTLWGFL 298

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQL 298
             +     I+F +  K V  +  S ++    +    +HG   Q +R++I + F       
Sbjct: 299 RTNLKSKIIVFLSSGKQVRFVYESFKRMQPGIPLLHLHGRQKQIARLEITNRFTSAKYSC 358

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+ ARG+D P V  V   D P  A+ YIHR+GRT R    G+A   +   + +   
Sbjct: 359 LFATDVVARGVDFPAVDWVIQADCPEDADTYIHRVGRTARYESKGRAVLFLDPSEEEGF- 417

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ-KSTGFDRRKKNYSSQK 417
            I++L +KKV      ++ ++    K    +H    +N   P  K  G    +K + S  
Sbjct: 418 -IKRLEQKKVH-----VAKVHVKENKKKSIKHELQSQNFQSPDLKYLG----QKAFVSYV 467

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRG 447
             I L++ +++ K  +   +  A SLG  G
Sbjct: 468 RSIYLQKDKEVFKFDKLDLDGFASSLGLPG 497


>gi|325180097|emb|CCA14499.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 836

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 127/368 (34%), Positives = 202/368 (54%), Gaps = 3/368 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  V  AV+  GY  PTPIQ K++PL+L   DV G+A+TG+GK+A+F++P++  
Sbjct: 28  FQHLGLSNPVYRAVMAMGYKVPTPIQRKSLPLILSGKDVVGMARTGSGKSAAFLIPLIEK 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++   RV + R L+L PTRELA Q     +   K  +L V+L++GG   E Q   L   
Sbjct: 88  LKEHSTRVGL-RGLVLAPTRELALQTLQFTKGLAKYTSLRVSLIVGGEGMEQQFSALASN 146

Query: 123 ADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D+L+ TPGR++ H        + ++E +V DEADR+ +MGF   +  I S +P  RQTL
Sbjct: 147 PDILVATPGRLMHHLQEIPDFNLKSVEYVVFDEADRLFEMGFADQLHEILSQMPPNRQTL 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L + +   L  P  I ++  +  +E ++  F  T     K    +  +   
Sbjct: 207 LFSATLPSVLAQFARAGLNEPAMIRLDVENKMSENLKMAF-FTVRSDDKPAVFVHLVRDF 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIF   + +V  L   L         ++G +DQ SR   ++ F+ G   L++ 
Sbjct: 266 LPKNDQTIIFTATRHHVEFLHQLLIANDIESSCVYGEMDQTSRKLNIAKFRAGKTNLLLV 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP + +V N+  P  A+ ++HR+GR  RAG+ G AF+L+   +   +  + 
Sbjct: 326 TDVAARGIDIPLLNNVINYSFPPTAKLFVHRVGRAARAGKSGTAFSLLDPTEYPFLVDLH 385

Query: 362 KLIEKKVD 369
             I ++++
Sbjct: 386 LYIGRRLE 393


>gi|322503578|emb|CBZ38664.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 571

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 121/374 (32%), Positives = 200/374 (53%), Gaps = 8/374 (2%)

Query: 10  PKVVCA-VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILEKGR 67
           P+ + A +L+ G+  PTPIQ ++  +VL   D+ G+A+TG+GKT +F++P +  I  +  
Sbjct: 112 PQYLKAKLLEQGFKAPTPIQAQSWSIVLSGRDLVGVAKTGSGKTLAFIVPALAHIALQEP 171

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
            +V     +I+       AQ  +         ++    + GG P   Q   L +G  +L+
Sbjct: 172 LKVGDGPMVIVLAPTRELAQQIEQEAIKVLPQSIRCGCIYGGAPKGPQLGLLRQGVHILV 231

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR++D     ++ +  +  LV+DEADRMLDMGF P ++ I   +   RQTL+FSAT 
Sbjct: 232 ATPGRLIDFMEIKRVNLLRVTYLVLDEADRMLDMGFEPQVRAICGQIRPDRQTLMFSATW 291

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
             ++Q ++ +F +N  RI V +    A           ++ +K      + L  +   + 
Sbjct: 292 PRDIQNLAASFQKNWVRINVGSMELLANKDVTQHFILTSEAAKLDE--LKRLMERHRNQR 349

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            +IFC  KK    L   L++ G    AIHG+ +QR R  IL  F++     +VA+D+AAR
Sbjct: 350 VLIFCKTKKTADYLEFQLKRNGVDCMAIHGDKEQRQREFILERFRKDPRLCVVATDVAAR 409

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH----IDAIEKL 363
           GLDI ++  V N+D P + ++Y+HRIGRTGRAG  G +FT++ K + +     +  + +L
Sbjct: 410 GLDIKELETVVNYDFPMQIDDYVHRIGRTGRAGAKGASFTMITKHETQLNASTVFQLVEL 469

Query: 364 IEKKVDWLNGDLSS 377
           +E+    + G L  
Sbjct: 470 VERAGQEVPGWLRE 483


>gi|312379831|gb|EFR25992.1| hypothetical protein AND_08228 [Anopheles darlingi]
          Length = 803

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 108/380 (28%), Positives = 180/380 (47%), Gaps = 27/380 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V+  +L  GY  PTPIQ KTIP+++   DV  +A+TG+GKT SF++PM   
Sbjct: 39  FQAMGLSAPVLKGILKMGYKVPTPIQRKTIPIIMDGRDVVAMAKTGSGKTGSFLIPMFEK 98

Query: 63  LEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L +  A+        IL PTRELA Q     ++ G+  +L   L++GG   +AQ   +  
Sbjct: 99  LRQREAKAGGGARALILSPTRELAIQTFRFIKQLGRFMDLKTILVLGGDSMDAQFAAVHT 158

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR L       L + +++  V+DEADR+ +MGF   + +    +P  RQ +
Sbjct: 159 LPDIIVATPGRFLHLCVEMDLKLGSVQYCVLDEADRLFEMGFGEQLSDTLKRLPEARQMV 218

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +   +   L  P  + ++  S   E +   +   +A       L+  +L  
Sbjct: 219 LFSATLPKMMVDFAMAGLCQPVLVRLDVESKIPEALALKYTVIFAGTQHHVELVSLILTK 278

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + +                  +  +V                           V 
Sbjct: 279 AGIPNSHVYSALDASARKINTAKFTMRKVNVL--------------------------VV 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP + +V N   P + + +IHR+GR  RAGR G A+++ + +DI H+  + 
Sbjct: 313 TDIAARGLDIPSLDYVINLHFPGKPKLFIHRVGRCARAGRSGVAYSIFSNDDIAHLIDLN 372

Query: 362 KLIEKKVDWLNGDLSSLNPP 381
             +++ ++  +     + PP
Sbjct: 373 MFLDRPLEVSDRATIGIPPP 392


>gi|308185825|ref|YP_003929956.1| ATP-dependent RNA helicase dbpA [Pantoea vagans C9-1]
 gi|308056335|gb|ADO08507.1| ATP-dependent RNA helicase dbpA [Pantoea vagans C9-1]
          Length = 460

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 128/373 (34%), Positives = 205/373 (54%), Gaps = 9/373 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY   TP+Q  T+P +LQ  DV   A+TG+GKTA+F + +L 
Sbjct: 4   FSTLNSLPDSQLDNLREMGYTSMTPVQAATLPAILQGRDVRAQAKTGSGKTAAFGIGLLH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++  R + +    LIL PTRELA QV +   +  +       L +  G P  AQ   L 
Sbjct: 64  HIDSTRFQTQ---ALILCPTRELADQVGNVLRQLARFTRNIKVLTLCGGQPMSAQRDSLV 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILDH NR  L ++ +  LV+DEADRML+MGF+  ++ I    P +RQT
Sbjct: 121 HPPHIVVGTPGRILDHINRENLKLDQLSTLVLDEADRMLEMGFLNDMETIIEATPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D +  +S  F    +R  ++  +     +       +     +   L   L 
Sbjct: 181 LLFSATWPDGITAISTRF----QRDALSVVTEDVSELPSIDQQFFEASHNEKLGLLIALL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN K+   ++  +L  +  S   +HG+++QR R ++L  F  G+ +++V
Sbjct: 237 SDRQPSSCVVFCNTKRECDDVAAALNARDISALPLHGDLEQRDRERVLIRFANGSGRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+ +    E ++HRIGRT RAG HG A +LVA +++    A+
Sbjct: 297 ATDVAARGLDIKSLAMVVNYQLAWDPEVHLHRIGRTARAGEHGVAVSLVAADEMARAHAL 356

Query: 361 EKLIEKKVDWLNG 373
           E  +++K+ W++ 
Sbjct: 357 EDFLQQKLPWVSA 369


>gi|146104369|ref|XP_001469806.1| DEAD box RNA helicase [Leishmania infantum]
 gi|134074176|emb|CAM72918.1| putative DEAD box RNA helicase [Leishmania infantum JPCM5]
          Length = 571

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 121/374 (32%), Positives = 200/374 (53%), Gaps = 8/374 (2%)

Query: 10  PKVVCA-VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILEKGR 67
           P+ + A +L+ G+  PTPIQ ++  +VL   D+ G+A+TG+GKT +F++P +  I  +  
Sbjct: 112 PQYLKAKLLEQGFKAPTPIQAQSWSIVLSGRDLVGVAKTGSGKTLAFIVPALAHIALQEP 171

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
            +V     +I+       AQ  +         ++    + GG P   Q   L +G  +L+
Sbjct: 172 LKVGDGPMVIVLAPTRELAQQIEQEAIKVLPQSIRCGCIYGGAPKGPQLGLLRQGVHILV 231

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR++D     ++ +  +  LV+DEADRMLDMGF P ++ I   +   RQTL+FSAT 
Sbjct: 232 ATPGRLIDFMEIKRVNLLRVTYLVLDEADRMLDMGFEPQVRAICGQIRPDRQTLMFSATW 291

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
             ++Q ++ +F +N  RI V +    A           ++ +K      + L  +   + 
Sbjct: 292 PRDIQNLAASFQKNWVRINVGSMELLANKDVTQHFILTSEAAKLDE--LKRLMERHRNQR 349

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            +IFC  KK    L   L++ G    AIHG+ +QR R  IL  F++     +VA+D+AAR
Sbjct: 350 VLIFCKTKKTADYLEFQLKRNGVDCMAIHGDKEQRQREFILERFRKDPRLCVVATDVAAR 409

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH----IDAIEKL 363
           GLDI ++  V N+D P + ++Y+HRIGRTGRAG  G +FT++ K + +     +  + +L
Sbjct: 410 GLDIKELETVVNYDFPMQIDDYVHRIGRTGRAGAKGASFTMITKHETQLNASTVFQLVEL 469

Query: 364 IEKKVDWLNGDLSS 377
           +E+    + G L  
Sbjct: 470 VERAGQEVPGWLRE 483


>gi|112983736|ref|NP_001037376.1| eukaryotic translation initiation factor 4A [Bombyx mori]
 gi|73695588|gb|AAZ80489.1| translation initiation factor 4A [Bombyx mori]
          Length = 420

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L  +++  +   G+ KP+ IQ + I   +Q  DV   AQ+GTGKTA+F + +L 
Sbjct: 48  TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 107

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G + N      IGG       ++LE 
Sbjct: 108 QIDTSIRE---CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 164

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  N I++ V+DEAD ML  GF   I ++  ++    Q +
Sbjct: 165 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVI 224

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM D++ +VS  F+++P RI V     T E I+  ++A   +  K   L       
Sbjct: 225 LLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDL--YD 282

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L  S+  + F+V A+HG++DQR R  I+  F+ G+ ++++ 
Sbjct: 283 TLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLIT 342

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V + D + +  IE
Sbjct: 343 TDLLARGIDVQQVSCVINYDLPSNRENYIHRIGRGGRFGRKGIAINFVTEADRRALKDIE 402

Query: 362 KLIEKKVDWLNGDLSSL 378
                 +  +  D+++L
Sbjct: 403 DFYHTSIVEMPSDVANL 419


>gi|66810125|ref|XP_638786.1| hypothetical protein DDB_G0284017 [Dictyostelium discoideum AX4]
 gi|74897069|sp|Q54Q94|DDX10_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx10; AltName:
           Full=DEAD box protein 10
 gi|60467406|gb|EAL65432.1| hypothetical protein DDB_G0284017 [Dictyostelium discoideum AX4]
          Length = 878

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 123/449 (27%), Positives = 207/449 (46%), Gaps = 14/449 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF DL +S   + A+ ++ ++K T IQ  ++P  L   D+ G A+TG+GKT SF+LP+L 
Sbjct: 142 DFKDLPISQLTLKALTESKFLKLTDIQRASLPHTLCGRDILGAAKTGSGKTLSFILPILE 201

Query: 62  ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L + R  R      ++L PTRELA Q+ D  +  GK +  +  L+IGG   + +  K+ 
Sbjct: 202 TLWRNRWGRDDGIGAIVLSPTRELAIQIFDVLKAVGKYHTFSAGLIIGGRNVQQEKDKIN 261

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++      +           +N++ILV+DEADR+LD+GF   + +I   +P  RQT
Sbjct: 262 AMNILIATPGRLLQHMDETYGFDCSNLKILVLDEADRILDLGFSKCLNSIVENLPRERQT 321

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT T  ++ ++   LQ P+ I V     T                 K   +     
Sbjct: 322 LLFSATQTKSIRDLARLSLQEPEYISVYEKDITTTPQNLTQTLCVIPLEMKL-NMLFSFI 380

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK--ILSNFKEGTIQL 298
                   I+F    K V     + +           +   +   +  +  +F +     
Sbjct: 381 KTHLTSKIIVFFASCKQVRFAHETFKLLNPGTTLFPLHGKMKQWTRLEVFEDFCKKKAGT 440

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+AARGLD P V  V   D P+  E YIHR+GRT R    G++ T++   +    D
Sbjct: 441 LFATDIAARGLDFPAVEWVIQVDCPDDIETYIHRVGRTARNDAPGQSITILLPSEK---D 497

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +  L+EK+          L P  EK+       ++ ++ + +K+      +K++ S   
Sbjct: 498 GMVNLMEKQ----KMKFEILEPNPEKL---VSIDSKLSSFLSEKTDLKYLAQKSFVSYLR 550

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRG 447
            +  + +++I K+Q+      + SLG  G
Sbjct: 551 SVYRQSNKEIFKIQELNINEFSKSLGLLG 579


>gi|215254416|gb|ACJ64200.1| vasa [Halocynthia roretzi]
          Length = 691

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 133/387 (34%), Positives = 209/387 (54%), Gaps = 11/387 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  L   V   +  A Y KPTP+Q  +IP+V    D+   AQTG+GKTA+F+LP+L 
Sbjct: 239 SFDEADLPETVRQNIRKANYKKPTPVQKYSIPIVNSDRDLMACAQTGSGKTAAFLLPVLR 298

Query: 62  IL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +          +  ++P+ +++ PTREL  Q+     K+ KN  +   +  GG     Q
Sbjct: 299 GMVKNGITNDMFSEKQLPQAVVVGPTRELVYQIFLETRKFSKNTIIKPIVAYGGTSVAHQ 358

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----IT 171
             +L RG ++LI TPGR+LD  NRGK+ + N++ L++DEADRMLDMGF P I+       
Sbjct: 359 LSQLSRGCNILIATPGRLLDFINRGKVGLANLQYLILDEADRMLDMGFEPEIRRLVAAPD 418

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
               + R TL+FSAT  + +Q+++  FL++            A +     V       K+
Sbjct: 419 IPDKYNRHTLMFSATFPNNIQELAHEFLRDDFLFLTVGRVGGACSDVTQTVLQVDTNDKR 478

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L+Q +   ++T    ++F + K+N   L   L ++G    +IHG+  QR R + L +F
Sbjct: 479 EKLMQLIADVEETKARTLVFVDTKRNADFLACFLSQEGCPTTSIHGDRLQREREQALYDF 538

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   +++A+ +AARGLDIP V HV NFD+P+  + Y+HRIGRTGR G  G+A +    
Sbjct: 539 KSGVCPILIATSVAARGLDIPKVEHVINFDLPSEIDEYVHRIGRTGRCGNLGQATSFYCD 598

Query: 352 E-DIKHIDAIEKLIEKKVDWLNGDLSS 377
           + D     ++ K++      + G L +
Sbjct: 599 DKDGALARSLVKILADSQQEVPGWLEN 625


>gi|209515859|ref|ZP_03264721.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209503707|gb|EEA03701.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 467

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 143/405 (35%), Positives = 209/405 (51%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L L P  +  +   GY++ TPIQ  ++P+ L   D+   A+TG+GKTA+F L +L  
Sbjct: 11  FSELPLPPATLANLTQLGYIEMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLAR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + ++L PTRELA QV     +  +       L +  G P   Q   LE 
Sbjct: 71  LDA---RKFDTQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH  RG L++  +  LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 128 GAHVVVGTPGRIMDHLERGTLVLQALNTLVLDEADRMLDMGFFDDIAKVARQCPKERQTL 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K+S+ F     R       +            Y     +      LL +
Sbjct: 188 LFSATYPEGIAKLSQQF----LRNPKEVKLAERHDDSKIRQRFYEVSEDERLHAVGLLLN 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 244 HYRPVSTIAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E + HRIGRTGRA + G A +L + +++  +  IE
Sbjct: 304 TDVAARGLDIAQLEAVINVDVTPDPEVHTHRIGRTGRADQEGWALSLASMDEMGRVGGIE 363

Query: 362 KLIEKKVDWLN-GDLSS-----LNPPLEKIDIAQHNHARKNNPIP 400
           +  ++ V+W    +L +     L PP+E + I      RK+   P
Sbjct: 364 QAHKRDVEWHKLAELKAASNDPLLPPMETLQIL---GGRKDKIRP 405


>gi|71737101|ref|YP_273396.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557654|gb|AAZ36865.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 482

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 125/373 (33%), Positives = 209/373 (56%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D  ++P+++ A+ D G+   TPIQ   +   L+  D  G AQTGTGKTA+F++ ++  
Sbjct: 95  FHDFNIAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 154

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      +  PR LI+ PTREL  Q+A +     K  NL V   +GG+ F+ Q K+
Sbjct: 155 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 214

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              R  D+L+ TPGR+LD   RG++ ++ +E++V+DEADRMLDMGFIP ++ I    P  
Sbjct: 215 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 274

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            +     FSAT T+++  +++ +  +P  +E+ + +  ++ +E    A       K    
Sbjct: 275 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYN 334

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                + +     ++F N+K  V  +   L + G +   + G++ Q  R+K L  F+EG 
Sbjct: 335 L---VTDNGWGRVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 391

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++VA+D+A RG+ I  + HV NF +P   ++Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 392 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 451

Query: 356 HIDAIEKLIEKKV 368
            + AIE+ + +K+
Sbjct: 452 QLPAIEEKLGRKI 464


>gi|58259251|ref|XP_567038.1| ATP dependent RNA helicase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57223175|gb|AAW41219.1| ATP dependent RNA helicase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 430

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 92/373 (24%), Positives = 162/373 (43%), Gaps = 5/373 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 49  FRDFLLKPELLRAISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQ 108

Query: 63  LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +E     V +       E   ++  +     +                   +      E+
Sbjct: 109 IEPVDGEVSIIILCHTRELAYQIKNEFTRFSKFMTNVRTGVFYGGTPISADQEILANKEK 168

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM-GFIPYIQNITSLVPFTRQT 180
              +++ TPGR +      KL  + ++  V+DE D+ML+       +Q I    P  +Q 
Sbjct: 169 CPHIVVGTPGRTMALVRDKKLNASKVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQV 228

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ +++   + F+Q+P  I V+  +         F     +  K        L 
Sbjct: 229 MMFSATLSKDIRATCKKFMQSPLEIYVDDETKLTLHGLQQFYLKLEEREKNR--KLNDLL 286

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                    IF    +    L   L++  F    IH  + Q  R+     FK    +++V
Sbjct: 287 DNLEFNQVCIFVKSVQRATQLDALLQECNFPSICIHSGLQQAERISRFQQFKAFEKRILV 346

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+  RG+D+  V  V N+D P+ A++Y+HR+GR GR G  G A + V+ + D + +  
Sbjct: 347 ATDIFGRGIDVERVNVVINYDAPSDADSYLHRVGRAGRFGTKGLAISFVSSDADQEVLQR 406

Query: 360 IEKLIEKKVDWLN 372
           I++     +  L 
Sbjct: 407 IQERFTVAIPTLP 419


>gi|268567592|ref|XP_002640036.1| Hypothetical protein CBG12508 [Caenorhabditis briggsae]
          Length = 573

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 101/430 (23%), Positives = 183/430 (42%), Gaps = 11/430 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  LSP ++  + +    +P+PIQ++ IP ++ R ++   A TG+GKT +F LP++
Sbjct: 125 LRFNDSSLSPSLLTHLSENDIRQPSPIQMQAIPFMMGRKNILASAPTGSGKTLAFALPVI 184

Query: 61  TILEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             +   + R    ++     ++LEPTRELAAQ    F KY    +++VA   G       
Sbjct: 185 DEILGLKRRADYSKSSKLLAIVLEPTRELAAQTYTEFVKYCSGTSISVANFSGEETDITH 244

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L                  +  + L+ +    + +  +               +   
Sbjct: 245 ADILVSTP--NRIVFHLDKIDTSLLRWLVVDESDRLFEVIEGQEKCFRNQLGAIYKACDA 302

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              +   FSAT + E++K  ++ ++N   + V   +S+  +++        +  KK A+ 
Sbjct: 303 KCTRVAFFSATFSHEVEKWCKDNIENIGMVCVGERNSSNTSVKQELTYCGTEDGKKVAIR 362

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L  +        +    +   +    S       V +I+     + R   +  F+ G 
Sbjct: 363 NLLRTAFRPPALVFVQSKDRAVQLVKLLSAIDSNLKVDSINSGKSDKERDDTMERFRNGE 422

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++V ++L  RGLD+ DVG V N+D+P    +YIHR+GRTGRAG+ G A T     D+K
Sbjct: 423 IWVLVCTELLGRGLDLSDVGLVINYDLPTSIISYIHRVGRTGRAGKTGHAVTYFTDTDMK 482

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           +I +I  +I +       D+      ++K+   +     K  P  QK      + +    
Sbjct: 483 YIKSIATVIRQS----GFDVPEYLMEMKKVSRDRKKEMLKRAPKRQKIATVIEQVRKQKM 538

Query: 416 QKSHIPLKES 425
            K+    KE 
Sbjct: 539 AKAAYEKKEK 548


>gi|58259249|ref|XP_567037.1| ATP dependent RNA helicase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134107387|ref|XP_777578.1| hypothetical protein CNBA7000 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687372|sp|Q5KNA3|SUB2_CRYNE RecName: Full=ATP-dependent RNA helicase SUB2
 gi|50260272|gb|EAL22931.1| hypothetical protein CNBA7000 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223174|gb|AAW41218.1| ATP dependent RNA helicase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 442

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 92/373 (24%), Positives = 162/373 (43%), Gaps = 5/373 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 61  FRDFLLKPELLRAISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQ 120

Query: 63  LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +E     V +       E   ++  +     +                   +      E+
Sbjct: 121 IEPVDGEVSIIILCHTRELAYQIKNEFTRFSKFMTNVRTGVFYGGTPISADQEILANKEK 180

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM-GFIPYIQNITSLVPFTRQT 180
              +++ TPGR +      KL  + ++  V+DE D+ML+       +Q I    P  +Q 
Sbjct: 181 CPHIVVGTPGRTMALVRDKKLNASKVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQV 240

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ +++   + F+Q+P  I V+  +         F     +  K        L 
Sbjct: 241 MMFSATLSKDIRATCKKFMQSPLEIYVDDETKLTLHGLQQFYLKLEEREKNR--KLNDLL 298

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                    IF    +    L   L++  F    IH  + Q  R+     FK    +++V
Sbjct: 299 DNLEFNQVCIFVKSVQRATQLDALLQECNFPSICIHSGLQQAERISRFQQFKAFEKRILV 358

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+  RG+D+  V  V N+D P+ A++Y+HR+GR GR G  G A + V+ + D + +  
Sbjct: 359 ATDIFGRGIDVERVNVVINYDAPSDADSYLHRVGRAGRFGTKGLAISFVSSDADQEVLQR 418

Query: 360 IEKLIEKKVDWLN 372
           I++     +  L 
Sbjct: 419 IQERFTVAIPTLP 431


>gi|314936321|ref|ZP_07843668.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           hominis subsp. hominis C80]
 gi|313654940|gb|EFS18685.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           hominis subsp. hominis C80]
          Length = 448

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 134/450 (29%), Positives = 218/450 (48%), Gaps = 15/450 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L+  ++ AV D  + KPT IQ + IP + +  ++ G +QTGTGK+ +F+LP++ +
Sbjct: 6   FEIFNLNTNLIDAVKDLNFNKPTEIQNRIIPRIKKGTNLIGQSQTGTGKSHAFLLPLIDL 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121
           +      ++ P+++++ PTRELA Q+            ++ V+L IGG   E   ++  +
Sbjct: 66  INT---DIKEPQSIVVAPTRELAQQLYKVASHLASFQSDIKVSLFIGGTDIEKDKQRTNQ 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L ++    L+IDEAD ++D+G I  +  I + +       
Sbjct: 123 QPQLVIGTPTRINDLAQSGHLHIHKASYLIIDEADLLIDLGLIEDVDYIAARLDENANIA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+   L+     +L +P+ + V+  S   + IE   + T         L       
Sbjct: 183 VFSATIPKSLEPFLNKYLSHPEYVVVDNKSQNKKNIEFYLIPTKGTEKVDKTLQL---ID 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFCN ++N   L  SL + G  V  IHG +  R R + +   +    Q ++A
Sbjct: 240 ILNPYLCIIFCNSRENANELAQSLNESGIKVGMIHGGLTPRERKQQMKRIRNLDFQYVIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVPN  + + HR+GRTGR    G A TL + ++  +I  IE
Sbjct: 300 SDLASRGIDIEGVSHVVNFDVPNDIDFFTHRVGRTGRGNYKGVALTLYSPDEEHNISLIE 359

Query: 362 K--LIEKKVDWLNGDLSSLNP-----PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                   VD  NG+L  +         E+ D    N  +       K+      KK + 
Sbjct: 360 DKGYHFDNVDIKNGELKPIKAHNTRHKRERKDDHLTNQVKHKVRSKSKNKVKLGYKKKFK 419

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLG 444
            +   +  +E ++ SK Q+ IQ+   +  G
Sbjct: 420 QEVERMKRQERKQYSK-QRSIQQRKNNKKG 448


>gi|331227385|ref|XP_003326361.1| ATP-dependent RNA helicase SUB2 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309305351|gb|EFP81942.1| ATP-dependent RNA helicase SUB2 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 433

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 103/378 (27%), Positives = 164/378 (43%), Gaps = 5/378 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q + IP  +   DV   A++G GKTA FV   L  
Sbjct: 52  FRDFLLKPELLRAISDLGFEHPSEVQQECIPQAILGMDVLCQAKSGMGKTAVFVTATLQQ 111

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++     V M       E   ++  + A   +         V   I         K  ++
Sbjct: 112 MDPKEGEVSMLVLCHTRELAYQIKNEYARFSKYMPDIRTAVVYGGIPIKQDAEMLKAKDK 171

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFIPYIQNITSLVPFTRQT 180
              +L+ TPGR+      G L  N +   V+DE D+M   +     +Q +    P  +Q 
Sbjct: 172 CPHILVGTPGRLNALVRDGLLKCNTVRTFVLDECDKMLESVDMRRDVQQVFLATPHAKQV 231

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ E++ V + F+QNP  I V+  +               + +K        L 
Sbjct: 232 MMFSATLSKEIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQHFVKIDEAAKNR--KLNDLL 289

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                    IF       V L   L    F   AIH  + Q  R+     FK    +++V
Sbjct: 290 DTLEFNQVCIFVKSVSRAVQLDQLLRDCNFPSIAIHSGLGQEERIDRYKQFKAFEKRILV 349

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+  RG+D+  V  V N+D P  A++Y+HR+GR GR G  G A T V+ E D   +DA
Sbjct: 350 ATDIFGRGIDVERVNIVINYDTPGEADSYLHRVGRAGRFGTKGLAITFVSSEADQTVLDA 409

Query: 360 IEKLIEKKVDWLNGDLSS 377
           I+   E  +  L   + +
Sbjct: 410 IQSRFEVAITELPDHIEA 427


>gi|213023601|ref|ZP_03338048.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 359

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 131/354 (37%), Positives = 198/354 (55%), Gaps = 4/354 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP + 
Sbjct: 5   TFSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT   D ++  +E  L++P  +  N  +   + I   +        K      + L
Sbjct: 185 MLFSATLEGDAIKDFAERLLEDPVEVSANPSTRERKKIHQWYYRADNFEHKVAL--LKHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             QD     I+F  +++ V  L  +L   G + C + G + Q  R + +    +G + ++
Sbjct: 243 LKQDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           VA+D+AARG+DIPDV HV NFD+P   + Y+HRIGRTGRAGR G A +LV   D
Sbjct: 303 VATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHD 356


>gi|169844510|ref|XP_001828976.1| ATP-dependent RNA helicase SUB2 [Coprinopsis cinerea okayama7#130]
 gi|116510088|gb|EAU92983.1| ATP-dependent RNA helicase SUB2 [Coprinopsis cinerea okayama7#130]
          Length = 432

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 98/377 (25%), Positives = 163/377 (43%), Gaps = 5/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 51  FRDFLLKPELLRAISDLGFEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQ 110

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           LE     V +       E   ++  +     +        T              +   +
Sbjct: 111 LEPVNGEVSVLVLCHTRELAFQIKNEYTRFAKYMPDVRVSTFYGGTPVAKDAEILRDKTK 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM-GFIPYIQNITSLVPFTRQT 180
              +++ TPGR+        L   N++  V+DE D+ML+       +Q I  + P  +Q 
Sbjct: 171 CPHIVVATPGRLNALARDKVLDAKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHHKQV 230

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT+  E++   + F+ NP  I V+  +               +  K   L +    
Sbjct: 231 MMFSATLAKEIRATCKKFMANPLEIFVDDETKLTLHGLQQHYVKLEEAGKNRKLNEL--L 288

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF       + L   L    F   AIH  + Q  R+K  + FK    +++V
Sbjct: 289 DNLEFNQVVIFVKSVARAIELDKLLVSCNFPSIAIHSGLQQEERIKRYTAFKAFEKRILV 348

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+  RG+D+  V  V N+D P  A++Y+HR+GR GR G  G A T V+ + D + + +
Sbjct: 349 ATDIFGRGIDVERVNIVVNYDCPPDADSYLHRVGRAGRFGTKGLAITFVSSDTDQQTMAS 408

Query: 360 IEKLIEKKVDWLNGDLS 376
           I+   E  V  L   + 
Sbjct: 409 IQSRFEVAVPELPDHID 425


>gi|299533009|ref|ZP_07046396.1| hypothetical protein CTS44_19497 [Comamonas testosteroni S44]
 gi|298719233|gb|EFI60203.1| hypothetical protein CTS44_19497 [Comamonas testosteroni S44]
          Length = 469

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 141/392 (35%), Positives = 209/392 (53%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LSP+++  +   GY + TPIQ  ++PL LQ  D+   A TG+GKTA+F LPM+  
Sbjct: 16  FSALPLSPEMLANLQQLGYAQMTPIQAASLPLTLQGKDLIAQASTGSGKTAAFGLPMVDR 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L      V+    L+L PTRELA QVA    +  +  +    + +  G+P   Q   LE 
Sbjct: 76  LNPRWFAVQ---ALVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRNQIASLEN 132

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++D   RGKL + N++ LV+DEADRMLDMGF+  I+ +    P  RQTL
Sbjct: 133 GAHIVVGTPGRVMDLMERGKLDIGNLKTLVLDEADRMLDMGFLGDIETVVRQCPADRQTL 192

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D +  ++  F     R       +T  +        Y   ++        L +
Sbjct: 193 LFSATYPDGIASLASRF----MRDPQTVKVATQHSAGKIAQRWYEVGARDKVDTVAKLLA 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ I FCN K+   ++   L+ QGFS  A+ G ++QR R ++L  F   +  ++VA
Sbjct: 249 HFRPESSIAFCNTKQQCRDVVSELQAQGFSALALFGELEQRERDEVLVQFANKSCSVLVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V N DV    E +IHRIGRTGR    G A  LV+ +++  +  IE
Sbjct: 309 TDVAARGLDIADLSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLVSMDEMGSVGKIE 368

Query: 362 KLIEKKVDWLNGDL------SSLNPPLEKIDI 387
           +L  +   +   +         L PP+  I I
Sbjct: 369 QLQGRASQFFPVEELTPAAGGELLPPMMTIQI 400


>gi|260809021|ref|XP_002599305.1| hypothetical protein BRAFLDRAFT_64339 [Branchiostoma floridae]
 gi|229284582|gb|EEN55317.1| hypothetical protein BRAFLDRAFT_64339 [Branchiostoma floridae]
          Length = 709

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 110/432 (25%), Positives = 183/432 (42%), Gaps = 55/432 (12%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+      V+  +  + +  PTPIQ +  P+ L   D+ GIAQTG+GKT +++LP + 
Sbjct: 137 TFAEGSFPDYVMEEIARSNFEFPTPIQAQGWPIALSGKDLVGIAQTGSGKTLAYMLPAIV 196

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       R   P  ++L PTRELA QV +   ++G +  +    + GG P   Q + L
Sbjct: 197 HINHQPFLERGDGPICVVLCPTRELAQQVQEVAVQFGHSSRIKNTCVYGGAPKGPQLRDL 256

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 257 ERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 316

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+++++E FL    ++ +   S  A       +    ++ K    + + +
Sbjct: 317 TLMWSATWPKEVRQLAEEFLHEYIQVNIGALSLCANHNILQIIDVVHEHEKDHNSVHEYI 376

Query: 240 ---------QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS- 289
                     +   +   I   ++ +   N  H   +      ++  N +    + ++  
Sbjct: 377 QVNIGALSLCANHNILQIIDVVHEHEKDHNSIHEYIQVNIGALSLCANHNILQIIDVVHE 436

Query: 290 -------------------------------------------NFKEGTIQLMVASDLAA 306
                                                                   +   
Sbjct: 437 HEKDHKLIRLLEEIMGEKENKTIIFVETKRRVDDLTRRMRRDGWPAMCIHGDKSQPERDW 496

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
              DI DV  V NFD P  AE+Y+HRIGRT R+ R G A+T     ++K    +  ++++
Sbjct: 497 VLNDITDVKFVINFDYPASAEDYVHRIGRTARSERTGTAYTFFTPNNMKQAKELVSVLQE 556

Query: 367 KVDWLNGDLSSL 378
               +N  L  +
Sbjct: 557 ARQQINPKLIEM 568


>gi|95102876|gb|ABF51379.1| eukaryotic translation initiation factor 4A [Bombyx mori]
          Length = 420

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L  +++  +   G+ KP+ IQ + I   +Q  DV   AQ+GTGKTA+F + +L 
Sbjct: 48  TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 107

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G + N      IGG       ++LE 
Sbjct: 108 QIDTSIRE---CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 164

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  N I++ V+DEAD ML  GF   I ++  ++    Q +
Sbjct: 165 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVI 224

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM D++ +VS  F+++P RI V     T E I+  ++A   +  K   L       
Sbjct: 225 LLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDL--YD 282

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L  S+  + F+V A+HG++DQR R  I+  F+ G+ ++++ 
Sbjct: 283 TLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLIT 342

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V + D + +  IE
Sbjct: 343 TDLLARGIDVQQVSCVINYDLPSNRENYIHRIGRGGRFGRKGIAINFVTEADRRALKDIE 402

Query: 362 KLIEKKVDWLNGDLSSL 378
                 +  +  D+++L
Sbjct: 403 DFYHTSIVEMPSDVANL 419


>gi|71275290|ref|ZP_00651577.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Dixon]
 gi|71902030|ref|ZP_00684074.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|71164099|gb|EAO13814.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Dixon]
 gi|71728209|gb|EAO30396.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
          Length = 544

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 128/393 (32%), Positives = 204/393 (51%), Gaps = 7/393 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F+   L P ++  +  AG+   TPIQ  T+P+ L   D+ G AQTGTGKT +F++ ++
Sbjct: 10  LNFSSFDLHPALLTGLTRAGFTLCTPIQALTLPVALAGSDIAGQAQTGTGKTLAFLVVVV 69

Query: 61  T----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                           PR LIL PTRELA Q+ ++  K+G N  L  AL+ GG+ ++ Q 
Sbjct: 70  NRLLSRPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQR 129

Query: 117 KKLERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L +GADV+I TPGR I        + +   EI V+DEADRM D+GFI  I+ I   +P
Sbjct: 130 EMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLP 189

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                     + T   + +   +       E     + + T        Y    ++   L
Sbjct: 190 ERCSRQTLLFSATLSHRVLELAYEY-MNEPEKLVAETESVTTTRVRQRIYFPAEEEKIPL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L S+      ++F N K  V  +  +L++ G+ V  + G++ QR R  +L+ F++G 
Sbjct: 249 LLGLLSRSEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQKGQ 308

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 309 LEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERYAM 368

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
            +  IE  IE+K+  +    + L  PL + + A
Sbjct: 369 SLPDIEAYIEQKIP-VAAVTAELLAPLSRPERA 400


>gi|291390469|ref|XP_002711765.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19 [Oryctolagus
           cuniculus]
          Length = 484

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 104/382 (27%), Positives = 177/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL M
Sbjct: 98  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 157

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      + P+ L L PT ELA Q     E+ G+ Y               + +K+
Sbjct: 158 LSQVEPAN---KYPQCLCLSPTYELALQTGKVIEQMGRFYPELKLAYAVRGNKLERGQKI 214

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 215 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 274

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V    +  K        L
Sbjct: 275 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNRDEK--FQALCNL 332

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 333 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGKEKVL 392

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 393 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 452

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 453 SMNILNRIQEHFNKKIERLDTD 474


>gi|238882849|gb|EEQ46487.1| hypothetical protein CAWG_04842 [Candida albicans WO-1]
          Length = 569

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 112/389 (28%), Positives = 194/389 (49%), Gaps = 7/389 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +   S   + A+ + G+ K T +Q KTIP +L   DV G A+TG+GKT +F++P + +
Sbjct: 114 FENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEL 173

Query: 63  LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   + + R     +I+ PTRELA Q+     +  + ++ T  ++IGG     +  KL +
Sbjct: 174 LYSLKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAK 233

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G ++L+ TPGR+LDH    + + +N++ LVIDEADR+L++GF   ++ I  ++P   +  
Sbjct: 234 GVNLLVATPGRLLDHLKNTQFVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNENRQS 293

Query: 182 L-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + FSAT T +++ ++   L+         P     T +          S K  LL     
Sbjct: 294 MLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSFL 353

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  K  I+F +   +V      L      V  +HG   Q+ R      F      ++V
Sbjct: 354 KRNVKKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGILV 413

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHIDA 359
            +D+AARGLDIP V  +  FD P+   +YIHR+GRT R  +  GK+   +   ++  +  
Sbjct: 414 CTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELGFLRY 473

Query: 360 IEKLIEKKVDWLN---GDLSSLNPPLEKI 385
           + K  +  ++        ++++   L K+
Sbjct: 474 L-KAAKVPLNEYEFPANKIANIQSQLTKL 501


>gi|9963783|gb|AAG09691.1|AF183422_1 RNA helicase [Homo sapiens]
          Length = 478

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 92  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 151

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      R P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 152 LSRVEPSD---RYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 208

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 209 SEQIVIGNPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 268

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        L
Sbjct: 269 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 326

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 327 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVLMLSGEMMVEQRAAVIERFREGKEKVL 386

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 387 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 446

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 447 SMNILNRIQEHFNKKIERLDTD 468


>gi|68467745|ref|XP_722031.1| hypothetical protein CaO19.11444 [Candida albicans SC5314]
 gi|46443978|gb|EAL03256.1| hypothetical protein CaO19.11444 [Candida albicans SC5314]
          Length = 569

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 112/389 (28%), Positives = 194/389 (49%), Gaps = 7/389 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +   S   + A+ + G+ K T +Q KTIP +L   DV G A+TG+GKT +F++P + +
Sbjct: 114 FENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEL 173

Query: 63  LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   + + R     +I+ PTRELA Q+     +  + ++ T  ++IGG     +  KL +
Sbjct: 174 LYSLKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAK 233

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G ++L+ TPGR+LDH    + + +N++ LVIDEADR+L++GF   ++ I  ++P   +  
Sbjct: 234 GVNLLVATPGRLLDHLKNTQFVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNENRQS 293

Query: 182 L-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + FSAT T +++ ++   L+         P     T +          S K  LL     
Sbjct: 294 MLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSFL 353

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  K  I+F +   +V      L      V  +HG   Q+ R      F      ++V
Sbjct: 354 KRNVKKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGILV 413

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHIDA 359
            +D+AARGLDIP V  +  FD P+   +YIHR+GRT R  +  GK+   +   ++  +  
Sbjct: 414 CTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELGFLRY 473

Query: 360 IEKLIEKKVDWLN---GDLSSLNPPLEKI 385
           + K  +  ++        ++++   L K+
Sbjct: 474 L-KAAKVPLNEYEFPANKIANIQSQLTKL 501


>gi|68468064|ref|XP_721871.1| hypothetical protein CaO19.3962 [Candida albicans SC5314]
 gi|74656630|sp|Q5AK59|HAS1_CANAL RecName: Full=ATP-dependent RNA helicase HAS1
 gi|46443813|gb|EAL03092.1| hypothetical protein CaO19.3962 [Candida albicans SC5314]
          Length = 565

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 112/389 (28%), Positives = 194/389 (49%), Gaps = 7/389 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +   S   + A+ + G+ K T +Q KTIP +L   DV G A+TG+GKT +F++P + +
Sbjct: 110 FENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEL 169

Query: 63  LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   + + R     +I+ PTRELA Q+     +  + ++ T  ++IGG     +  KL +
Sbjct: 170 LYSLKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAK 229

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G ++L+ TPGR+LDH    + + +N++ LVIDEADR+L++GF   ++ I  ++P   +  
Sbjct: 230 GVNLLVATPGRLLDHLKNTQFVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNENRQS 289

Query: 182 L-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + FSAT T +++ ++   L+         P     T +          S K  LL     
Sbjct: 290 MLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSFL 349

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  K  I+F +   +V      L      V  +HG   Q+ R      F      ++V
Sbjct: 350 KRNVKKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGILV 409

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHIDA 359
            +D+AARGLDIP V  +  FD P+   +YIHR+GRT R  +  GK+   +   ++  +  
Sbjct: 410 CTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELGFLRY 469

Query: 360 IEKLIEKKVDWLN---GDLSSLNPPLEKI 385
           + K  +  ++        ++++   L K+
Sbjct: 470 L-KAAKVPLNEYEFPANKIANIQSQLTKL 497


>gi|170092587|ref|XP_001877515.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647374|gb|EDR11618.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 397

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 211/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L P+++  +   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 25  NFDNMDLKPELLRGIYAYGFERPSAIQQRAIVPVVKGHDVIAQAQSGTGKTATFSISILQ 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     ++  + LIL PTRELA Q+       G   N+     +GG        KL+ 
Sbjct: 85  QLDMS---IKGTQALILAPTRELAQQIQKVVIALGDYMNIECHACVGGTNVREDMAKLQE 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L  +NI+I  +DEAD ML  GF   I  +  L+P   Q +
Sbjct: 142 GVQVVVGTPGRVFDMINRRALRTDNIKIFCLDEADEMLSRGFKDQIYEVFQLLPQDTQVV 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V++ F+++P RI V     T E I+  ++A   +  K   L       
Sbjct: 202 LLSATMPADVLEVTKKFMRDPVRILVKRDELTLEGIKQFYIAVEKEEWKLDTLCDL--YE 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   +  + F+V A+HG+++Q+ R  ++  F+ G+ ++++ 
Sbjct: 260 TVTITQAVIFCNTRRKVDWLTEKMHSREFTVSAMHGDMEQKQREVLMKEFRSGSSRVLIT 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 320 TDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTTDDVRMLRDIE 379

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 380 QFYNTQIDEMPLNVADL 396


>gi|34498296|ref|NP_902511.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
 gi|34104150|gb|AAQ60509.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 420

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 138/365 (37%), Positives = 202/365 (55%), Gaps = 6/365 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGL P +V + L+  YV+PT IQ   IP +LQ  DV   AQTG+GKTA+F LP+L
Sbjct: 1   MPFASLGLQPDLVQSALEQDYVRPTAIQSAAIPAILQGGDVLATAQTGSGKTAAFCLPLL 60

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNK 117
                    + R PR LIL PTRELAAQV D      ++      VA++ GG+    Q  
Sbjct: 61  QQWLDSPRAILRQPRALILLPTRELAAQVGDILRDLAQSLPRKLKVAVVYGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GAD+++ TPGR+LD  +   L ++ ++ LV+DEADR+LD+GF   + ++   +P  
Sbjct: 121 ALRGGADIVVATPGRLLDLLDHNALRLSAVKTLVLDEADRLLDLGFADELGSVLDRLPPA 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ LLFSAT    ++ ++E  L+ P RI        A T            + K  LL +
Sbjct: 181 RQNLLFSATFPPAVRALAEKLLKQPLRI---DIEHAAATAPDIRQRAIEVDAGKRTLLLR 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L +       ++F   ++    +   L + G    A+HG+  Q  R + L++ K G ++
Sbjct: 238 HLLATRDWDKALVFVASRQAADRVADKLRRNGVPAAALHGDCSQGQRGQALADLKSGRLR 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  +  V N+D+P    +Y HRIGRTGRAG  G+A + V+ +   H 
Sbjct: 298 VLVATDVAARGIDIARLPLVVNYDLPRSPVDYTHRIGRTGRAGARGEAISFVSADCAAHF 357

Query: 358 DAIEK 362
             IEK
Sbjct: 358 RLIEK 362


>gi|260949783|ref|XP_002619188.1| hypothetical protein CLUG_00347 [Clavispora lusitaniae ATCC 42720]
 gi|238846760|gb|EEQ36224.1| hypothetical protein CLUG_00347 [Clavispora lusitaniae ATCC 42720]
          Length = 764

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 117/449 (26%), Positives = 212/449 (47%), Gaps = 13/449 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            FADL ++      + +A +V  T IQ K IPL L+  D+ G A+TG+GKT +F++P + 
Sbjct: 45  QFADLPITEATARGLKEANFVSMTDIQRKCIPLALKGEDIMGTARTGSGKTLAFLVPVIE 104

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ++      +     LI+ PTRELA Q+ +   K GK+ + +  L+ GG   + + +++ 
Sbjct: 105 RLVHSNITGLDGLAALIISPTRELAVQIFEVLTKIGKHNSFSAGLVTGGKDVQYEKERVA 164

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++               +  +N+++LV+DEADR LDMGF   I +I S +   RQT
Sbjct: 165 RMNILVGTPGRVSQHLNETFGMDTSNLQVLVLDEADRCLDMGFKKQIDSIVSHLSPERQT 224

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT +D ++ ++   L NP ++ V++ ++ + T E           ++   +     
Sbjct: 225 LLFSATQSDSIKDLARLSLTNPIKVGVSSDATLSATPETLDQYYVRIPLEEKLDVLWSFI 284

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC--AIHGNIDQRSRMKILSNFKEGTIQL 298
                   ++F +  K V     S       +    ++G   Q SR++  + F       
Sbjct: 285 KSHLKSKILVFFSSSKQVQYTYESFRTLQPGISLLKLYGRHKQTSRLETTTKFSHAQYAC 344

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+ ARGLD P +  V   D P  A  Y+HR+GR  R GR GK+  ++   + + + 
Sbjct: 345 LFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGRCARFGRPGKSLLMLTPSEEEGM- 403

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +++L  + +D    ++        K  I     +        K+ G    ++ + S   
Sbjct: 404 -LKRLKNQNIDIKIMNI----KQKSKKSIRPQLQSLCFKDPQMKNLG----QRAFISYYR 454

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRG 447
            + +++ + + K++    E  A+SLG  G
Sbjct: 455 SVYIQKDKDVFKIEDIPAEKYAESLGLPG 483


>gi|195336302|ref|XP_002034780.1| GM14284 [Drosophila sechellia]
 gi|194127873|gb|EDW49916.1| GM14284 [Drosophila sechellia]
          Length = 827

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 120/431 (27%), Positives = 217/431 (50%), Gaps = 3/431 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++  +   GY  PTPIQ KTIPL+L+  DV  +A+TG+GKTA F++P+   
Sbjct: 41  FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++        R LIL PTRELA Q     ++ G+   L   L++GG   ++Q   +   
Sbjct: 101 LQRREPTKGA-RALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTC 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR L       L +N+IE +V DEADR+ +MGF   +      +P +RQT++
Sbjct: 160 PDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQTVM 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L +P  I ++  S   + +            +  AL+  L    
Sbjct: 220 FSATLPKLLVEFARAGLNDPVLIRLDVESKLPDAL-ALKFLYCRPDDRYTALVVLLKYVI 278

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   + +V  + + L + G S  +++ ++D  +R    + F    + +++ +
Sbjct: 279 PVESQTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIVT 338

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP +  V N   P + + ++HR+GR  RAGR G A+++V+ +D  H+  +  
Sbjct: 339 DVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLLDLHL 398

Query: 363 LIEKKVDWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
            + +  +  +   L ++   L + +       + ++ I       +   K Y S +    
Sbjct: 399 FLNRPFNIHDSSALGTIPQDLLEEEHLTVTDIKNSHHIAGVLRTSENAYKKYLSSRPVAS 458

Query: 422 LKESEKISKLQ 432
              + ++ K++
Sbjct: 459 TDANARVKKIK 469


>gi|71895253|ref|NP_001025971.1| ATP-dependent RNA helicase DDX3X [Gallus gallus]
 gi|60098425|emb|CAH65043.1| hypothetical protein RCJMB04_2a4 [Gallus gallus]
          Length = 651

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 137/429 (31%), Positives = 216/429 (50%), Gaps = 30/429 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 173 SFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 232

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 233 QIYADGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVV 292

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 293 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 352

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 353 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 412

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK    L   L  +G++  +IHG+  QR
Sbjct: 413 WVEELDKRSFLLDLLNATGKDSL--TLVFVETKKGADALEDFLYHEGYACTSIHGDRSQR 470

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 471 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 530

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH--ARKNNPIP 400
           G A +   + +I     +       +D L      +   LE +   QH+     +     
Sbjct: 531 GLATSFFNERNINITKDL-------LDLLVEAKQEVPSWLENMAYEQHHKGGGSRGRSKS 583

Query: 401 QKSTGFDRR 409
           + + GF  R
Sbjct: 584 RFTGGFGAR 592


>gi|297693028|ref|XP_002823828.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
           DDX54-like [Pongo abelii]
          Length = 883

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 129/366 (35%), Positives = 196/366 (53%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 98  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 158 LKTHSAQTGA-RALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I + +P   QT+L
Sbjct: 217 PDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVL 276

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +   E ++  F     + +K   LL  L    
Sbjct: 277 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSF-FLVREDTKAAVLLHLLRNVV 335

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K +   L   L  Q  S   I+  +D  +R   L+ F  G    ++ +
Sbjct: 336 RPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVT 395

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA ++I ++  +  
Sbjct: 396 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHL 455

Query: 363 LIEKKV 368
            + + +
Sbjct: 456 FLGRSL 461


>gi|116333834|ref|YP_795361.1| superfamily II DNA/RNA helicase [Lactobacillus brevis ATCC 367]
 gi|116099181|gb|ABJ64330.1| Superfamily II DNA and RNA helicase [Lactobacillus brevis ATCC 367]
          Length = 452

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 179/365 (49%), Gaps = 10/365 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF +  L P ++ A+   G+ +PT +Q K IP++   HDV G +QTG+GKT +F+LP+  
Sbjct: 4   DFKNFNLQPYLMTALQKIGFQQPTAVQEKLIPVISAGHDVVGQSQTGSGKTHTFLLPIFN 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK--- 118
                       + +I  P+RELA Q+    E+        + +       + Q +    
Sbjct: 64  Q----LTSENQVQAVITTPSRELAYQIRTAAEQLAAEAPFEIRIGNYVGGTDKQRQIEKL 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 ++I TPGR+ D      L ++     V+DEAD  LD+GF+  +  I   +P   
Sbjct: 120 RHYQPQLVIGTPGRVQDLIQSQALDVHTTRQFVVDEADMTLDLGFLDQVDKIAGRMPKNL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT+   L      ++ +P   E+ T +  + TI++  ++T  Q   +       
Sbjct: 180 QMMVFSATIPQRLDPFLRKYMNHPVVEEIPTATVISSTIDNWLISTKGQNKNQLIYQL-- 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +       +IF N K  V  +   L+ QG  V  IHG I  R R +++   K    Q 
Sbjct: 238 -ITMGEPYLVLIFANTKTRVEQIHDFLQSQGLKVAMIHGGIKPRERKRVMREVKNLQFQF 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N D+P   + ++HR+GRTGR G  G A TL + ++   I 
Sbjct: 297 VVATDLAARGIDIEGVSHVINDDIPEDLDFFVHRVGRTGRQGMPGTAITLYSPDEEAKIA 356

Query: 359 AIEKL 363
            IE +
Sbjct: 357 EIEAM 361


>gi|116750069|ref|YP_846756.1| DEAD/DEAH box helicase domain-containing protein [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699133|gb|ABK18321.1| DEAD/DEAH box helicase domain protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 533

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 135/417 (32%), Positives = 205/417 (49%), Gaps = 11/417 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L   ++  + DA +   TPIQ   +P  L   D  G AQTGTGKTA F++ MLT 
Sbjct: 118 FHDLDLPAPILRGIADAEFRYCTPIQAALLPHTLNGLDAAGRAQTGTGKTAVFIITMLTQ 177

Query: 63  LEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   PR L+L PTRELA Q+        ++       + GG+ +E Q ++
Sbjct: 178 FLRNPAPEGRRKGTPRALVLAPTRELALQIEKETHLLSRHTPFKSVAIFGGMDYEKQKRR 237

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 D+++ TPGR+LD   +G L ++ +EILVIDEADRMLDMGFIP +Q I    P  
Sbjct: 238 LTGEVIDIVVATPGRLLDFKRQGDLHLSKVEILVIDEADRMLDMGFIPDVQRIIHYTPPK 297

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q      + T   +            + V                      +K  L   
Sbjct: 298 AQRQTMLFSATLTAEVTRFASQWTRNPVTVEIEPEQVAVDTVNQRVLITTIDEKFTL-LF 356

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            + ++  +   I+F N++     L   L   G S   + G +DQ+ R+K L  F+ G I+
Sbjct: 357 NMITRQNLDRVIVFTNRRDQARRLTERLGSYGISCALLSGEVDQKKRVKTLEEFRNGKIR 416

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGL +  V HVFN+++P   E+Y+HRIGRTGRAG  G + +  +++D   I
Sbjct: 417 VLVATDVAARGLHVEAVSHVFNYNMPMDPEDYVHRIGRTGRAGTSGISVSFASEDDSFLI 476

Query: 358 DAIEKLIEKKVDWLNGD---LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            A+EK +  ++   + D   L +L  P      A+    R++ P   ++     R+K
Sbjct: 477 PALEKYLGHEIHCEHPDEDMLETLPEPTHTPVAAER--PRRSGPYRGRNPRSTGRRK 531


>gi|209877927|ref|XP_002140405.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209556011|gb|EEA06056.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 680

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 130/440 (29%), Positives = 214/440 (48%), Gaps = 24/440 (5%)

Query: 2   DFADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +F ++ G+   ++  +    Y +PTP+Q  +IP VL   D+   AQTG+GKTA+F+ P++
Sbjct: 198 NFMEIEGIHEILLANIRRVKYERPTPVQKFSIPTVLNGRDLMACAQTGSGKTAAFLFPII 257

Query: 61  TILEKG------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
             + K               RV  P  L+L PTRELA Q+ +   K+     +   +L G
Sbjct: 258 MRMLKDGPPPTPQQSSLRIKRVAYPVALVLSPTRELAIQIYEESRKFCYGTGIRTNVLYG 317

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G     Q   L+RG+D+++ TPGR+ D  +RGK+ +  I+ L++DEADRMLDMGF P I+
Sbjct: 318 GSEIRNQILDLDRGSDIVVATPGRLRDLIDRGKVYLKLIKFLILDEADRMLDMGFAPQIR 377

Query: 169 NITSLVPFTR-----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
            I             QT++FSAT   E+Q+++++FL +   + V        T       
Sbjct: 378 EIIEDSDMPHSLEGRQTVMFSATFPREIQQLAKDFLHSYIFLTVGRVG---ATSGSIVQR 434

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
                      L   L  +      ++F   K+    +   L  Q F   +IHG+  Q+ 
Sbjct: 435 VVYAEEDHKPRLLVKLLMEQGEGLTVVFVEMKRRADQIEDFLIDQNFPAVSIHGDRSQQE 494

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L  F+ G   ++VA+D+AARGLDIP++ HV N D+P   ++Y+HRIGRTGRAG  G
Sbjct: 495 REHALRLFRSGQRPILVATDVAARGLDIPNITHVINLDMPCNIDDYVHRIGRTGRAGNTG 554

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
            A + V + +   +  +   +E+           +   ++    +   +  + +     +
Sbjct: 555 LATSFVNENNKPILRDLLAALEESGQDAPEWFQDM---VKSCTASFGRYGNRFSRGGGSN 611

Query: 404 TGFDRRKKNYSSQKSHIPLK 423
           +G  R  +  S     I ++
Sbjct: 612 SGTQRSGRGASHNFGSIDIR 631


>gi|157121423|ref|XP_001659898.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108874627|gb|EAT38852.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 784

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 114/379 (30%), Positives = 195/379 (51%), Gaps = 2/379 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  ++ A+L  GY  PTPIQ KTIPL+L+  DV  +A+TG+GKT  F++P+   
Sbjct: 40  FQAMGLSMPILKAILKMGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTGCFLIPLFEK 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++   +    R L+L PTRELA Q     ++ GK  +L   L++GG   ++Q   +   
Sbjct: 100 LKQREIKSGA-RALVLTPTRELAIQTFKFIKQLGKFTDLKTILVLGGDSMDSQFAAIHTL 158

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR L       L +++++  V DEADR+ +MGF   +      +P  RQ +L
Sbjct: 159 PDIIVATPGRFLHLCVEMDLKLSSVQYCVFDEADRLFEMGFGEQLTETLRRLPEARQMVL 218

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +   ++  L +P  I ++  S   E +            +   LL  L +  
Sbjct: 219 FSATLPKLMVDFAKAGLSDPTLIRLDVESKIPEAL-DLKFVYCRPDERYATLLILLREVI 277

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   + +V  +   L + G     +  ++D  +R    + F    + ++V +
Sbjct: 278 PRSAQTVLFAGTQHHVELISLILTRAGIPNTYVFSSLDASARKINTAKFTMKKVNVLVVT 337

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIP + +V N   P + + ++HR+GR  RAGR G A+ + + +DI H+  +  
Sbjct: 338 DIAARGLDIPSLDYVVNVHFPGKPKLFVHRVGRCARAGRSGTAYNIFSNDDIAHMIDLHM 397

Query: 363 LIEKKVDWLNGDLSSLNPP 381
            + + +   +     + PP
Sbjct: 398 FLTRPLVLSDARCIGVAPP 416


>gi|90417199|ref|ZP_01225126.1| putative ATP-dependent RNA helicase DbpA [marine gamma
           proteobacterium HTCC2207]
 gi|90330975|gb|EAS46236.1| putative ATP-dependent RNA helicase DbpA [marine gamma
           proteobacterium HTCC2207]
          Length = 466

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 135/385 (35%), Positives = 213/385 (55%), Gaps = 9/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ L L+P +V  +   GY + TPIQ + +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 9   DFSSLDLNPALVDNLASLGYSEMTPIQAQALPSILASKDVIAKAKTGSGKTATFSLGLLN 68

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+  R RV+   TL+L PTRELA QVA    K  +  +    L +  G+ F  Q   LE
Sbjct: 69  KLDVKRFRVQ---TLVLCPTRELADQVAAEIRKLARGIHNIKVLTLCGGVAFGPQVGSLE 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ DH  +  L ++N+  L++DEADRMLDMGF   + +I   +P  RQT
Sbjct: 126 HGAHIIVGTPGRVEDHLRKANLNLDNLTTLILDEADRMLDMGFQQALDDIVGYMPRQRQT 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT  +++ K+++  +++P  +       +  +             +      +LL 
Sbjct: 186 MLFSATYPEKIDKIAQRIMRSPVTV---EVQDSHSSQSIVETLYQIDNDQSRIEAVRLLL 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                +  +IFCN K     + + L   G+   A+HG+++Q+ R + L+ F   ++ ++V
Sbjct: 243 QAHQPETTLIFCNTKIETDRVANELRAVGYEASALHGDLEQKDRDQTLACFANRSVSVLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+ +    E + HRIGRTGRAG  G A +L  +++   ID +
Sbjct: 303 ATDVAARGLDIDALDMVINYQMAQELEVHTHRIGRTGRAGAQGIACSLYTQKETYKIDLL 362

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKI 385
           E  +E+K +   GDL  L    E +
Sbjct: 363 EDYLEQKFNR--GDLPHLELLREPV 385


>gi|328773151|gb|EGF83188.1| hypothetical protein BATDEDRAFT_29188 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 472

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 124/455 (27%), Positives = 200/455 (43%), Gaps = 27/455 (5%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F DL     L   +   +LD+ Y+KPT +Q++ IP++L   +V   A TG+GKT +F+L
Sbjct: 25  SFTDLCDRFKLRSYLRRNLLDSDYLKPTSVQMQAIPIMLHNREVMACAPTGSGKTLAFLL 84

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL-------LIGGI 110
           P+L  L+           LI+ PTRELA Q     +K          +           +
Sbjct: 85  PILHDLKGPTKEGFR--ALIIAPTRELAQQTYRELKKLSVGKPFKTCVLTKATNATNPDV 142

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY-IQN 169
               +N  +     + + T  +        ++    +  LV+DEAD++L++GF+    + 
Sbjct: 143 SSTLKNFDILISTPLRLVTAIKENAIQLDKQVYRILVRHLVLDEADKLLELGFLEQVDEI 202

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
             +    T Q  LFSATM   +++++   +++P RI V       ETI    +    +  
Sbjct: 203 FAACSSTTLQKSLFSATMPSGIEQLARTIMKDPIRIIVGCKEGATETINQKLMFVGQEEG 262

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K  A+ Q + +        +IF         L H L   G +V  +H    Q  R  I+ 
Sbjct: 263 KLIAMRQLIQEGLRPP--VLIFVQSIDRAKELFHELVYDGINVDVMHSERTQTQRDTIIK 320

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           NF+ G I +++A++L ARG+D   V  V N+D P   ++Y+HRIGRTGRAGR G+A T  
Sbjct: 321 NFRCGKIWVLIATELMARGIDFKGVNLVINYDFPQTVQSYVHRIGRTGRAGRTGEAITYF 380

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            KED  ++  I       V+ +      +   + K+     N  R     P K      +
Sbjct: 381 TKEDAPYLKNI-------VNVMKTSGCDVPEWMLKLKNPSTNMKRDLRGRPLKR----EQ 429

Query: 410 KKNYSSQKSHIPLKESEKISKLQQDIQENDADSLG 444
            K  SS    I  ++   I   Q+  Q    D+  
Sbjct: 430 IKTVSSYDERISKRKHSMIEGSQRRKQHRKQDTTA 464


>gi|91228572|ref|ZP_01262491.1| ATP-dependent RNA helicase DbpA [Vibrio alginolyticus 12G01]
 gi|269964706|ref|ZP_06178944.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|91187851|gb|EAS74164.1| ATP-dependent RNA helicase DbpA [Vibrio alginolyticus 12G01]
 gi|269830605|gb|EEZ84826.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 459

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 146/403 (36%), Positives = 228/403 (56%), Gaps = 12/403 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL+P ++  +    Y   TPIQ  ++P +L+  DV G  +TG+GKTA+F L +L+
Sbjct: 5   TFDQVGLNPALLATLDSLNYTHMTPIQALSLPAILKHRDVIGQGKTGSGKTAAFGLGVLS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+   +L+L PTRELA QVA      G+  +    L +  G+P   Q   LE
Sbjct: 65  NLNVKRFRVQ---SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH  +G++ ++ +  LV+DEADRMLDMGF   +  I    P  RQT
Sbjct: 122 HGAHILVGTPGRILDHLEKGRIDLSELNTLVLDEADRMLDMGFQDALDAIIDAAPKQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  ++++++++  +Q P+ I+V +   T +T          + S+        L 
Sbjct: 182 LLFSATFPEKIEQIAQRIMQTPEVIKVES---THDTSSIAQYFYKVEGSEARDEALANLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++FCN KK V ++   L  +GFSV  IHG+++QR R + L  F   ++ ++V
Sbjct: 239 LTHQPESAVVFCNTKKEVQSVADELHHKGFSVIDIHGDLEQRERDQALVQFANKSVSILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+   ++D   +  I
Sbjct: 299 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARI 358

Query: 361 EKLIEKKVDWLNGDL---SSLNPPLEKIDIAQHNHARKNNPIP 400
           E+ +E  +D +   L   S+  P   K+     +  +K    P
Sbjct: 359 EEYLE--MDVVPATLPAKSNQQPYQAKMVTINIDGGKKQKVRP 399


>gi|71027833|ref|XP_763560.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68350513|gb|EAN31277.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 894

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 124/383 (32%), Positives = 193/383 (50%), Gaps = 7/383 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+  GL   ++  +    Y KP PIQ++ IP ++   DV GIA+TG+GKT +F+LP + 
Sbjct: 418 SFSQCGLPDPILKILEKREYEKPFPIQMQCIPALMCGRDVIGIAETGSGKTLAFLLPGIR 477

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +           LI+ PTREL  Q+++   K+ K+  L    + GG     Q   L
Sbjct: 478 HVLDQPPLRESDGMIVLIIAPTRELVIQISNECAKFSKSVGLRTLAVYGGAGIGEQLNAL 537

Query: 120 ERGADVLICTPGRILD---HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++ TPGR++D           +  +  LV+DEADRM DMGF P I  I   +  
Sbjct: 538 KRGAEIVVGTPGRLIDVLTLSKGKVTNLRRVTYLVLDEADRMFDMGFAPQISAIVGNIRP 597

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT LFSAT    ++ +++  L  P +I V          +           KK   L 
Sbjct: 598 DRQTALFSATFPLMIENLAKKILVKPLQIVVG--QRGKSASQVDQHVVVLNDDKKLLKLL 655

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       N IIF N +    +L + L   G+    +HG +DQ  R   L++F+EG  
Sbjct: 656 KLLGEWHEHGNIIIFVNTQLESEHLFNDLLAYGYEAGILHGGVDQTDREFTLNDFREGKK 715

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+ +AARG+D+  V  V N+  P+  E+Y+HR+GRTGRAG  G ++T +  E+   
Sbjct: 716 TILIATSIAARGIDVKSVVLVINYAAPDHFEDYVHRVGRTGRAGTIGTSYTFLTPEEAAK 775

Query: 357 IDAIEKLIEKKVDWLNGDLSSLN 379
              I K +      +  +L  L+
Sbjct: 776 SHDIIKALRLASQEVPKELLQLS 798


>gi|314927518|gb|EFS91349.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1]
 gi|328907794|gb|EGG27557.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium sp.
           P08]
          Length = 536

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 143/451 (31%), Positives = 219/451 (48%), Gaps = 21/451 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L 
Sbjct: 34  SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 93

Query: 62  ILEKGRARVR-------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L++ PTRELA QV+ +           V  + GG+ +E 
Sbjct: 94  RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSQDISTAASVRGARVLTVYGGVGYEP 153

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L+ G DV++ TPGR+LD   R  L ++++ I+V+DEAD MLD+GF+P ++N+    
Sbjct: 154 QIDALQAGVDVVVGTPGRLLDLSQRKNLDLSHVHIVVLDEADEMLDLGFLPDVENLIGRT 213

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P  RQT+LFSATM   +         N         + T  T+       Y  +      
Sbjct: 214 PTPRQTMLFSATMPAPI-MALARSQLNRPVHVRAEGADTQATVPDTQQFVYQAHPLDKIE 272

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +   +  +  IIFC  K+    L   L  +GF   AIHG++ Q +R K L  F+ G
Sbjct: 273 IIGRILQANDAEKVIIFCRTKRACQRLSDDLNDRGFKARAIHGDLTQVAREKALKRFRHG 332

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   D+
Sbjct: 333 DVTILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGTKGVAVTLVDWADV 392

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF-DRRKKNY 413
                I+K +  +          L+ P+E    + H +   +  IP+ + G      K  
Sbjct: 393 TRWKLIDKALNLE----------LSEPVETYSTSPHLYT--DLDIPEDARGKIAGAGKGD 440

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLG 444
           + +K            K  +    ND+   G
Sbjct: 441 TEKKGRQHHHSHSSSGKTTRRRSRNDSKDGG 471


>gi|307189936|gb|EFN74172.1| Eukaryotic initiation factor 4A-II [Camponotus floridanus]
          Length = 423

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F + +L 
Sbjct: 51  NFDEMNLKEELLRGIYAYGFEKPSAIQQRAILPCIRGLDVIAQAQSGTGKTATFSISILQ 110

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G   +      IGG       +KL++
Sbjct: 111 QIDTSIKE---CQALILAPTRELAQQIQKVVIALGDFMHAECHACIGGTNVREDMRKLDQ 167

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  +R  L  N+I++ V+DEAD ML  GF   I ++  L+P   Q +
Sbjct: 168 GVHVVVGTPGRVYDMISRRALRANSIKLFVLDEADEMLSRGFKDQIHDVFKLLPNEVQVI 227

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++  VS+ F++NP RI V     T E I+  FV    +  K   L       
Sbjct: 228 LLSATMPSDVLDVSKCFMRNPIRILVKKEELTLEGIKQFFVYVEREDWKLETLCDL--YD 285

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L  S+ K+ F+V A+HG+++Q+ R  I+  F+ G+ ++++ 
Sbjct: 286 TLSITQAVIFCNTRRKVDWLTESMHKRDFTVSAMHGDMEQKERDLIMRQFRTGSSRVLIT 345

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V +ED + +  IE
Sbjct: 346 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTEEDKRTLKDIE 405

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     +D +  +++ L
Sbjct: 406 QFYNTHIDEMPMNVADL 422


>gi|297484847|ref|XP_002694562.1| PREDICTED: DEAD box RNA helicase DP97-like [Bos taurus]
 gi|296478588|gb|DAA20703.1| DEAD box RNA helicase DP97-like [Bos taurus]
          Length = 876

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 130/366 (35%), Positives = 197/366 (53%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F++PM   
Sbjct: 98  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSGKTACFLIPMFER 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 158 LKTHSAQTGA-RALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHEN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I   +P   QT+L
Sbjct: 217 PDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVL 276

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  S   E ++  F     + +K   LL  L    
Sbjct: 277 FSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSF-FLVREDAKAAVLLHLLRNVV 335

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K +   L   L  QG S   I+  +DQ +R   L+ F  G    ++ +
Sbjct: 336 RPQDQTVVFVATKHHAEYLSELLATQGVSCAHIYSALDQTARKINLARFTHGKCSALIVT 395

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA +++ ++  +  
Sbjct: 396 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHL 455

Query: 363 LIEKKV 368
            + + +
Sbjct: 456 FLGRAL 461


>gi|55821673|ref|YP_140115.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55823593|ref|YP_142034.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
 gi|55737658|gb|AAV61300.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55739578|gb|AAV63219.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 447

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 184/366 (50%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ +  + +PTP+Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDFNFKDYIQEALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L      V++    I  P+RELA Q+  + ++  K+ +  + ++      + Q +  +
Sbjct: 61  EKLNPESRDVQVV---ITAPSRELATQIYQSTKQIAKHSDTEIRVVNYVGGTDKQRQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D F  G L ++     V+DEAD  +DMGF+  +  I + +P  
Sbjct: 118 LKVAQPHIVIGTPGRIYDLFKSGDLAIHKAHTFVVDEADMTMDMGFLATVDKIAASLPKE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEQIKTSTVIADTI---DNWLVSTKGRNKNGQIL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K+   +L   L   G  V  IHG I  R R +I++  K+   +
Sbjct: 235 EMLKGMQPYLAMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLEFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 RELEKM 360


>gi|297624335|ref|YP_003705769.1| DEAD/DEAH box helicase domain-containing protein [Truepera
           radiovictrix DSM 17093]
 gi|297165515|gb|ADI15226.1| DEAD/DEAH box helicase domain protein [Truepera radiovictrix DSM
           17093]
          Length = 526

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 131/368 (35%), Positives = 198/368 (53%), Gaps = 7/368 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L   +  A+   G+  PT IQ  T+P  L   DV G+A+TGTGKT +F LP+   
Sbjct: 2   FHDLPLRASLSRALEAKGFSTPTTIQAATLPHALAGGDVLGLARTGTGKTLAFGLPIANR 61

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE   AR R PR LIL PTRELA QVA   E     +N  V  + GG  +  Q   L+RG
Sbjct: 62  LEPESARGRAPRALILTPTRELALQVAGELEWLAPEHN--VVTVYGGTGYGKQASDLKRG 119

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           AD+++ TPGR +D++ +G L ++ +E+ V+DEAD ML+ GF   ++ + +  P  RQTLL
Sbjct: 120 ADIVVATPGRAVDYYKQGVLQLSRVEVAVLDEADEMLNAGFEEDVELLLAATPQERQTLL 179

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+    + ++   L++P R  V +     +                   +   +   
Sbjct: 180 FSATLPRWAESLAARHLRDPLRANVTS-----DESVSYDEVAIEAPLASRLGVLSDVLHV 234

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F   K  V  L  +L   G    A+HG+++Q  R ++L  F+   + ++VA+
Sbjct: 235 HGTGASIVFTRTKAEVDELAKALTSLGHLAEAVHGDLNQVQRERVLERFRASQVTVLVAT 294

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDIP+V  V ++  P + E Y HR GRTGRAGR G    L +  + + +  +E+
Sbjct: 295 DVAARGLDIPEVDLVVHYRFPEQPERYQHRSGRTGRAGRAGTVVLLYSPRERRELALLER 354

Query: 363 LIEKKVDW 370
            I ++++ 
Sbjct: 355 AIARRIER 362


>gi|195385378|ref|XP_002051383.1| GJ15436 [Drosophila virilis]
 gi|194147840|gb|EDW63538.1| GJ15436 [Drosophila virilis]
          Length = 403

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F + +L 
Sbjct: 31  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATFSIAILQ 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 91  QIDTSMRE---CQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L   +I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 148 GCHVVVGTPGRVYDMINRKVLRTQSIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F++ P  I V     T E I+  +V    +  K   L       
Sbjct: 208 LLSATMPPDVLEVSRCFMREPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDL--YD 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG++DQR R  I+  F+ G+ ++++ 
Sbjct: 266 TLSITQSVIFCNTRRKVDQLTQEMSNHNFTVSAMHGDMDQRDREVIMKQFRSGSSRVLIT 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  +D + +  IE
Sbjct: 326 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIE 385

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 386 QFYHTTIEEMPANIADL 402


>gi|164424264|ref|XP_958421.2| eIF4A [Neurospora crassa OR74A]
 gi|161789047|sp|Q7RV88|IF4A_NEUCR RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|157070442|gb|EAA29185.2| eIF4A [Neurospora crassa OR74A]
          Length = 397

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 210/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L P+++  +   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 25  SFDEMNLKPELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQ 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++  + LIL PTRELA Q+       G   N+     IGG       K L+ 
Sbjct: 85  KIDPS---LKACQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVRDDMKALQD 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I  L+P + Q +
Sbjct: 142 GPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVV 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F++ P RI V     T E I+  ++A   +  K        L  
Sbjct: 202 LLSATMPQDVLEVTTKFMREPVRILVKKDELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A
Sbjct: 260 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIA 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 320 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 379

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 380 QFYSTQIEEMPMNVADL 396


>gi|126307666|ref|XP_001371632.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 52
           [Monodelphis domestica]
          Length = 608

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 111/443 (25%), Positives = 208/443 (46%), Gaps = 21/443 (4%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     +  +++  +L+AG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 170 SFQQLDQEYKIHSRLLQNILNAGFQNPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 229

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L++   +    R LI+ PTRELA+Q      +  +        +    +  +   
Sbjct: 230 PILMQLKQPTNKGF--RALIISPTRELASQTHRELVRLSEGTGFRIHMIHKAAVAAKKFG 287

Query: 117 KKLERGADVLICTPGRILDH--FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++     +   + + N+E LV+DE+D++ + G   +        
Sbjct: 288 PKSSKKFDILVTTPNRLIYLLKQDPPGIDLKNVEWLVVDESDKLFEDGKTGFRDQLAFIF 347

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT   ++++  +  L +   + +   +S AET+E   +   ++  K
Sbjct: 348 LACTSHKVRRAMFSATFAHDVEQWCKLNLDSVISVSIGARNSAAETVEQELLFVGSETGK 407

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+   + +        ++F    +    L H L  +G +V  IH    Q+ R   + +
Sbjct: 408 LLAIRDLIKKGFHPP--VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHS 465

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D P  A  YIHRIGRTGRAG  GKA T   
Sbjct: 466 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSAVEYIHRIGRTGRAGHKGKAVTFFT 525

Query: 351 KEDIKHIDAIEKLIEKK---VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ---KST 404
           ++D   + ++  +I++    V         L    +K  I +       +  PQ   ++ 
Sbjct: 526 EDDKPLLRSVANVIQQAGCPVPEYIRSFHKLPSKQKKKMIKKPLERESISTTPQYFLENA 585

Query: 405 GFDRRKKNYSSQKSHIPLKESEK 427
             +++  + +S+K   P K++  
Sbjct: 586 KKEQKIIHQNSEKMTAPAKKNNN 608


>gi|120612881|ref|YP_972559.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120591345|gb|ABM34785.1| ATP-dependent RNA helicase DbpA [Acidovorax citrulli AAC00-1]
          Length = 477

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 142/392 (36%), Positives = 208/392 (53%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLSP+V+  +   GY + TPIQ  ++P  L   D+   A TG+GKTA+F L +L  
Sbjct: 19  FDALGLSPEVLANLRQLGYERMTPIQAASLPPALLGRDLIAQASTGSGKTAAFGLALLER 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L     R    + L+L PTRELA QVA    +  +       + +  G+P   Q   LE 
Sbjct: 79  L---NPRRFAVQALVLCPTRELADQVAAEIRRLARAQENIKVVTLCGGVPLRGQAASLEH 135

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  RG L +  +   V+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 136 GAHVVVGTPGRVMDHLERGTLDLGALATFVLDEADRMLDMGFSEDIAQVARRCPDTRQTL 195

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + +++++  F+++P+RI V    +  +         Y    ++       L +
Sbjct: 196 LFSATYPEGIERIARQFMKDPQRIVVQAQHAEGKI----GQRWYEVQERERLHAVSQLLN 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ I FCN K+   +L   L  QGFS  A+HG+++QR R ++L  F   +  ++VA
Sbjct: 252 HFRPESAIAFCNTKQQCRDLVEVLRAQGFSALALHGDLEQRDRDQVLVQFANRSCSVLVA 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI  +  V N DV    E +IHRIGRTGRA   G A +L +  ++  +  IE
Sbjct: 312 TDVAARGIDIAGLQAVINVDVAPDPEVHIHRIGRTGRADAEGLALSLASLPEMGQVGRIE 371

Query: 362 KLIEKKVDWL------NGDLSSLNPPLEKIDI 387
            L  +  +W             L PP+  I I
Sbjct: 372 VLQGRPSEWHPLSGLTPAPGGPLQPPMATIQI 403


>gi|301093251|ref|XP_002997474.1| ATP-dependent RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262110730|gb|EEY68782.1| ATP-dependent RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 489

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 111/363 (30%), Positives = 179/363 (49%), Gaps = 3/363 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA L LS     A++D G+ K T IQ K+I  +L   D+ G A+TG+GKT SF++P + 
Sbjct: 106 EFASLPLSEPTRKALVDMGFTKMTKIQSKSIRPLLAGQDLLGAAKTGSGKTLSFLIPAVE 165

Query: 62  ILEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L K R   R     I + PTRELA Q+        K ++ T  +++GG    A+ ++L 
Sbjct: 166 LLHKVRFTARKGTGCIVISPTRELALQIYGVVRDICKYHSQTHGIVMGGANRRAEAERLV 225

Query: 121 RGADV-LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G ++ +      +    N    + +N++ILVIDEADR+L +GF   ++ I   +P  RQ
Sbjct: 226 KGVNILISTPGRLLDHLQNTKAFIYHNLQILVIDEADRILSIGFEEEMRQIIKCIPKERQ 285

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT T +++ ++   ++            T  T+           S K  LL    
Sbjct: 286 TMLFSATQTKKVEDLARLSIKEKPVYVGVEEEDTKATVATLEQGYVVTPSDKRFLLLFTF 345

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  ++F +    V      L      V  IHG   Q  R      F      ++
Sbjct: 346 LKKNLKKKVMVFFSSCSAVKFYGELLNYIDIPVLDIHGKQKQNKRTTTFFQFCNAKTGIL 405

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHID 358
           + +D+AARGLDIP V  +  FD P+    YIHR+GRT R  +  GKA  ++  +++  + 
Sbjct: 406 LCTDVAARGLDIPAVDWIIQFDPPDDPREYIHRVGRTARGAKGKGKALLMLLPDELGFLK 465

Query: 359 AIE 361
            ++
Sbjct: 466 YLK 468


>gi|328462823|gb|EGF34690.1| putative RNA helicase [Lactobacillus helveticus MTCC 5463]
          Length = 453

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 135/440 (30%), Positives = 209/440 (47%), Gaps = 13/440 (2%)

Query: 1   MD--FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           M+  FAD  + P +   +    + KPT +Q K IP +L    V   A TG+GKT ++++P
Sbjct: 1   MNNIFADSRIRPAIQEGLKKIHFEKPTKVQEKVIPAMLSDLRVVVQAATGSGKTHAYLVP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +   +++    V+   TL      +   QVA         +     L  G        K 
Sbjct: 61  IFNEIDEDAHYVQAIVTLPSRELADQLYQVARQLRDAAGMHFSIAHLAGGTDRERQLEKY 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 ++I TPGR+LD   +  L+++ ++  VIDEAD  LDMGF+  I  + S +P   
Sbjct: 121 QNNTPQLVIATPGRLLDFVQKKVLVVDQVKTFVIDEADMTLDMGFLADIDQVASKMPKDV 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q   FSAT+  +L      ++ +P +I ++ PS  A TI           SK    +   
Sbjct: 181 QIAAFSATIPVKLSNFLRKYMAHPDQIVIDNPSVIAPTI---KNDLLDIGSKNRKSVLYK 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +       ++F N K+ V  L   L+ QG  V  IHG + +R R + L   ++G  Q 
Sbjct: 238 LLTMGQPYLALVFANTKQTVDELTRYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQFQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARGLDI  V  V N+++P   E  IHRIGRTGR G  G A TL+ +E++  I+
Sbjct: 298 VVASDLAARGLDIDGVSLVINYEIPRDIEFVIHRIGRTGRNGLSGHAITLICEEEMNRIE 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF-----DRRKKNY 413
            +EK +    D++      L P   K   ++ N   KN+    K  G+      +RK  Y
Sbjct: 358 DLEK-MGVHFDFVEIKNGELVP--RKHYRSRENRQGKNHKFDTKLVGYVKKEKRKRKPGY 414

Query: 414 SSQKSHIPLKESEKISKLQQ 433
             +      +++ +  KL+Q
Sbjct: 415 KKKIKRAIQEDNRQKRKLEQ 434


>gi|307131092|ref|YP_003883108.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
 gi|306528621|gb|ADM98551.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
          Length = 457

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 132/371 (35%), Positives = 205/371 (55%), Gaps = 9/371 (2%)

Query: 2   DFADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            FA+L  L  + +  + + GY+  TPIQ   +P +L   DV   A+TG+GKTA+F L +L
Sbjct: 3   SFAELNVLPAEQLTTLNELGYLTMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             L+ G+   +    L+L PTRELA QVA+   +  +       L + G +PF  Q   L
Sbjct: 63  QQLDAGQFNTQS---LVLCPTRELADQVANELRRLARYLPNIKVLTLCGGVPFSIQRDSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +++ TPGR+LDH  +  + ++ ++ LV+DEADRMLDMGF   I  + + VP  RQ
Sbjct: 120 IHAPHIIVATPGRLLDHLKKETVSLDALQTLVLDEADRMLDMGFADAIDEVIAHVPAQRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  D +           +R  +     T + +       Y         L Q L
Sbjct: 180 TLLFSATWPDAIAA----ISHRIQRDPLTIAIDTVDELPAIEQQFYEVSRSGKIDLLQKL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S++   + ++FCN KK+   +  +L     SV A+HG+++QR R + L  F  G+ +++
Sbjct: 236 LSREQPASCVVFCNTKKDCQAVYDALTDSNQSVLALHGDMEQRDRDQTLVRFANGSSRVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+++    E +IHRIGRT RAG  G A +L A E+ +  +A
Sbjct: 296 VATDVAARGLDIKALEMVINYELSWDPEVHIHRIGRTARAGESGLAISLCAPEEAQRANA 355

Query: 360 IEKLIEKKVDW 370
           +E+++  K++W
Sbjct: 356 LEEMLNMKLNW 366


>gi|193785182|dbj|BAG54335.1| unnamed protein product [Homo sapiens]
          Length = 674

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 131/368 (35%), Positives = 216/368 (58%), Gaps = 3/368 (0%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--LTILEKGRARV 70
           +  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM    + +K     
Sbjct: 1   MHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPG 60

Query: 71  RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130
             P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L+ GA++++CTP
Sbjct: 61  DGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTP 120

Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190
           GR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQTLLFSAT   +
Sbjct: 121 GRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKK 180

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGII 250
           ++K++ + L +P R+         E +       ++  SK   L ++L++   +  + ++
Sbjct: 181 IEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSG-SVLL 239

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++VA+D+AARGLD
Sbjct: 240 FVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLD 299

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           IP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      + + +E     
Sbjct: 300 IPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQH 359

Query: 371 LNGDLSSL 378
           ++ +L  L
Sbjct: 360 VSKELLDL 367


>gi|156553129|ref|XP_001599839.1| PREDICTED: similar to eukaryotic translation initiation factor 4A
           [Nasonia vitripennis]
          Length = 423

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 128/377 (33%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 51  NFDDMNLKEELLRGIYAYGFEKPSAIQQRAILPCVKGHDVIAQAQSGTGKTATFSISILQ 110

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G   +      IGG       ++LE+
Sbjct: 111 KIDTNINE---CQALILAPTRELAQQIQKVVIALGDFMHAQCHACIGGTNVREDMRRLEQ 167

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  +R  L  N+I++ V+DEAD ML  GF   I ++  L+P     +
Sbjct: 168 GVHVVVGTPGRVFDMISRRALRSNSIKLFVLDEADEMLSRGFKDQIYDVFKLLPXXXXVI 227

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS+ F++ P RI V     T E I+  F+    +  K   L       
Sbjct: 228 LLSATMPSDVLEVSKCFMREPVRILVKKEELTLEGIKQFFIYIEREDWKLDTLCDL--YD 285

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   + ++ F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 286 TLSITQAVIFCNTRRKVDWLTDHMHQKDFTVSAMHGDMEQRERDLIMRQFRTGSSRVLIT 345

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V  +D + +  IE
Sbjct: 346 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTSDDKRILKDIE 405

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     +D +  +++ L
Sbjct: 406 QFYNTHIDEMPMNVADL 422


>gi|114669836|ref|XP_001147439.1| PREDICTED: DEAD box polypeptide 42 protein isoform 2 [Pan
           troglodytes]
 gi|114669838|ref|XP_001147515.1| PREDICTED: DEAD box polypeptide 42 protein isoform 3 [Pan
           troglodytes]
          Length = 674

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 131/368 (35%), Positives = 216/368 (58%), Gaps = 3/368 (0%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--LTILEKGRARV 70
           +  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM    + +K     
Sbjct: 1   MHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPG 60

Query: 71  RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130
             P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L+ GA++++CTP
Sbjct: 61  DGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTP 120

Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190
           GR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQTLLFSAT   +
Sbjct: 121 GRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKK 180

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGII 250
           ++K++ + L +P R+         E +       ++  SK   L ++L++   +  + ++
Sbjct: 181 IEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSG-SVLL 239

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++VA+D+AARGLD
Sbjct: 240 FVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLD 299

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           IP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      + + +E     
Sbjct: 300 IPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQH 359

Query: 371 LNGDLSSL 378
           ++ +L  L
Sbjct: 360 VSKELLDL 367


>gi|73965189|ref|XP_861178.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           isoform 2 [Canis familiaris]
          Length = 432

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 131/368 (35%), Positives = 216/368 (58%), Gaps = 3/368 (0%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--LTILEKGRARV 70
           +  +  + Y +PTPIQ + +P+ L   D+ GIA+TG+GKTA+F+ PM    + +K     
Sbjct: 1   MHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPG 60

Query: 71  RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130
             P  +I+ PTREL  Q+    +++GK YNL    + GG     Q K L+ GA++++CTP
Sbjct: 61  DGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTP 120

Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190
           GR++DH  +    +  +  LV DEADRM DMGF   +++I S V   RQTLLFSAT   +
Sbjct: 121 GRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKK 180

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGII 250
           ++K++ + L +P R+         E +       ++  SK   L ++L++   +  + ++
Sbjct: 181 IEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSG-SVLL 239

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F  +K N   L ++L+++G ++  +HG++DQ  R K++S+FK+  I ++VA+D+AARGLD
Sbjct: 240 FVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLD 299

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           IP +  V N+DV    + + HRIGRTGRAG  G A+TL+  +D      + + +E     
Sbjct: 300 IPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQH 359

Query: 371 LNGDLSSL 378
           ++ +L  L
Sbjct: 360 VSKELLDL 367


>gi|296413310|ref|XP_002836357.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295630174|emb|CAZ80548.1| unnamed protein product [Tuber melanosporum]
          Length = 443

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 94/373 (25%), Positives = 166/373 (44%), Gaps = 5/373 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q   IP  +   DV   A++G GKTA FVL  L  
Sbjct: 61  FRDFLLKPELLRAIVDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLTTLQQ 120

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++       +       E   ++  + A   +   +                   K  ++
Sbjct: 121 VDPVPGEASVLVMCHTRELAYQIKNEYARFSKYMPEVRTAVFYGGTPMQNDVQVLKNKDQ 180

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+        L + ++++ V+DE D+M   +     +Q I    P  +Q 
Sbjct: 181 HPHIIVATPGRLNALVRDKHLRLGSVKVFVLDECDKMLEQIDMRRDVQEIFRATPQQKQV 240

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ E++ + + F+Q+P  I V+  +         +     +  K   L +    
Sbjct: 241 MMFSATLSQEIRPICKKFMQSPLEIYVDDETKLTLHGLQQYYVKLEEKEKNRKLNEL--L 298

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      IIF         L   L +  F   A+H  I Q  R+     FKE   ++ V
Sbjct: 299 DQLEFNQVIIFVKSTIRATELSRLLNECNFPSIAVHSGIAQEERIARYKQFKEFNKRICV 358

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           A+D+  RG+DI  +    N+D+P   ++Y+HR+GR GR G  G + + V +KED + +D 
Sbjct: 359 ATDVFGRGIDIERINLAINYDLPADPDSYLHRVGRAGRFGTKGLSISFVSSKEDAEVLDK 418

Query: 360 IEKLIEKKVDWLN 372
           I +  E  +D   
Sbjct: 419 IMERFEVSLDEFP 431


>gi|227827050|ref|YP_002828829.1| DEAD/DEAH box helicase [Sulfolobus islandicus M.14.25]
 gi|229584218|ref|YP_002842719.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.27]
 gi|227458845|gb|ACP37531.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.14.25]
 gi|228019267|gb|ACP54674.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.27]
          Length = 360

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 124/362 (34%), Positives = 196/362 (54%), Gaps = 22/362 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    LS  +  A+ +AGY+KPT +Q   IP ++    V   A+TG+GKTA++V+P+L  
Sbjct: 19  FE--NLSEDLRKALNEAGYIKPTRVQEVVIPELMNGKSVIVQAKTGSGKTAAYVIPILER 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                         IL PTRELA Q+ D  +K GK   + V+L+IGGI ++ Q +     
Sbjct: 77  NSTAL---------ILSPTRELATQILDEIKKLGKYKQIDVSLIIGGISYDDQRQSK--- 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LD +++GK+  +  + +++DEADRMLDMGFI  I+ I +          
Sbjct: 125 --IVVGTPGRLLDLWSKGKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCNAKIA-GF 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ DE+  +++ F ++ + I ++      E  +           K   LL++     
Sbjct: 182 FSATIPDEIMTLAKEFSKDLREIVLDEYKPVEEVKQKFVKVRNDWNDKVSKLLEE----- 236

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  ++F   +     L + L+ +G +V  + G++ Q  R+K    FK+G   ++VA+
Sbjct: 237 IDGEKILVFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVAT 296

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLA+RG+DI DV  V NFD+P   E YIHR+GRTGR GR G+A T     +   I  I  
Sbjct: 297 DLASRGIDIIDVNKVINFDIPRDVETYIHRVGRTGRMGRVGQAITFYTFREADMIKRINN 356

Query: 363 LI 364
           L+
Sbjct: 357 LL 358


>gi|167381238|ref|XP_001735636.1| DEAD box ATP-dependent RNA helicase [Entamoeba dispar SAW760]
 gi|165902329|gb|EDR28186.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba dispar
           SAW760]
          Length = 450

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 178/379 (46%), Gaps = 11/379 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+   ++  +   G +KPT IQ   IP +L  H+V G A+TG+GKTA+F LP++ 
Sbjct: 31  TFDGLGIKQFLLPTLKQFGIIKPTKIQQLCIPPLLSFHNVLGGAETGSGKTAAFALPIIH 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L            L+L PTRELA+Q+AD F+ +G   N+ V  ++GG+        L  
Sbjct: 91  HLST---DPYTGFALVLTPTRELASQIADQFKVFGSCINIRVVQVVGGVDVIRILHHLSG 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEAD--RMLDMGFIPYIQNITSLVPFTRQ 179
              V+I TPG+++   +      ++ + L++DEAD       G +  +Q I S    T  
Sbjct: 148 SPHVVIATPGKLVSLIDHLPFSFDSAKFLILDEADRLFDPSTGMLDDVQKIRSKFSKTVT 207

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT    + ++    L + K +        ++  +  ++    +          + 
Sbjct: 208 TGLFSATTDSLIPQLPALGLADTKILITGERQKLSDNCDQTYIFMPNKVKHCYLTYLCIN 267

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        ++       +            S        +       L++F+ G   ++
Sbjct: 268 KQCIVFCGSVLRTEVIFRMFKSMEIKATVLHSALPQIARENN------LNSFRSGEALIL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLA+RGLDIPDV  V N+DVP+ AE+YIHR+GRT RA R G A TLV + +   I +
Sbjct: 322 VATDLASRGLDIPDVPLVINYDVPHTAEDYIHRVGRTARANRKGLAITLVDEYESDRIQS 381

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE  +  ++     D   +
Sbjct: 382 IESQLGVQLKEYKVDEEKV 400


>gi|39970591|ref|XP_366686.1| hypothetical protein MGG_02762 [Magnaporthe oryzae 70-15]
 gi|149210055|ref|XP_001522402.1| hypothetical protein MGCH7_ch7g509 [Magnaporthe oryzae 70-15]
 gi|86196464|gb|EAQ71102.1| hypothetical protein MGCH7_ch7g509 [Magnaporthe oryzae 70-15]
 gi|145017425|gb|EDK01788.1| hypothetical protein MGG_02762 [Magnaporthe oryzae 70-15]
          Length = 619

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 109/406 (26%), Positives = 172/406 (42%), Gaps = 27/406 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D GL P ++  V   GY  PTPIQ   IP + + HDV GIAQTG+GKTA+F++P++
Sbjct: 122 LRFEDAGLHPAMLKNVDLCGYKVPTPIQAYCIPAIHKGHDVIGIAQTGSGKTAAFLIPVI 181

Query: 61  TILEKGRARVRMPRTL-------------------ILEPTRELAAQVADNFEKYGKNYNL 101
             L     ++  PR                     I+ PTRELA Q  +   K      L
Sbjct: 182 NKLMGKAKKLAAPRPNPVEYNMDIHGPVRAEPLVVIVCPTRELAIQAFNEARKLCYRSML 241

Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
              ++ GG  F  Q +++  G D+L  TPGR+L   ++ +LL       V+ +    +  
Sbjct: 242 RPGVVYGGGNFMDQIRQIGLGCDILCATPGRLLHFMDKPELLNLQRVRYVVIDEADEMLT 301

Query: 162 GFIPYIQNITSL---VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
                               + LLFSAT   +++ ++   L           + +  +  
Sbjct: 302 ADWEEDMKKIMSAGGAAQEIKYLLFSATFPKKIRDLAREHLSEDHVQLRVGRAGSTHSNI 361

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
              V   A  +KK AL   +       +  I   N+        +   +      ++H +
Sbjct: 362 IQTVIETAPMNKKRALNDLINSMPPQ-RTIIFVNNKWTADELDDYLYNECKLPCTSMHAD 420

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNR----AENYIHRIG 334
             QR R   L  F+ GT  ++V + + ARG+D+ +V HV N+D+P+      E Y HRIG
Sbjct: 421 RTQREREDALRAFRAGTAPILVTTGVTARGIDVRNVAHVVNYDLPSMDHGGIEEYTHRIG 480

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNP 380
           RTGR G  G A +     D      + + + +    +   LS   P
Sbjct: 481 RTGRIGNKGLATSFYTDRDEAIASVLVRTMLETNQEIPEFLSGYIP 526


>gi|326932508|ref|XP_003212358.1| PREDICTED: ATP-dependent RNA helicase DDX19B-like [Meleagris
           gallopavo]
          Length = 706

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 105/383 (27%), Positives = 181/383 (47%), Gaps = 15/383 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR---HDVCGIAQTGTGKTASFVLP 58
            F +L L P+++  V   G+ +P+ IQ   +P++L      ++   +Q+GTGKTA+FVL 
Sbjct: 319 SFEELHLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPSPQNLIAQSQSGTGKTAAFVLA 378

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           ML+ +E G    + P+ L L PT ELA Q     E+ GK Y               + +K
Sbjct: 379 MLSRVEPGN---KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQK 435

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +     +             +          ++ +    +   G       I  ++P   
Sbjct: 436 ISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRDC 495

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K  AL    
Sbjct: 496 QMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNSRDEKFRALC--N 553

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +    T+   ++FC+ +K    L   L K+G  V  + G +    R  ++  F+EG  ++
Sbjct: 554 IYGAITIAQAMVFCHTRKTAGWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV 613

Query: 299 MVASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AK 351
           +V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K
Sbjct: 614 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAINMVDSK 673

Query: 352 EDIKHIDAIEKLIEKKVDWLNGD 374
             +  ++ I++   KK++ L+ D
Sbjct: 674 HSMNILNRIQEHFSKKINRLDTD 696


>gi|322698392|gb|EFY90162.1| ATP-dependent RNA helicase DBP8 [Metarhizium acridum CQMa 102]
          Length = 548

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 119/435 (27%), Positives = 202/435 (46%), Gaps = 21/435 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L + P +V ++ +    +PT IQ   IP +L+  D  G ++TG+GKT +F +P+L 
Sbjct: 118 SFSSLNVRPWLVQSLANMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQ 177

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +  + +      +L PTRELA Q+ + F+      +L   L+ GG    AQ   + +
Sbjct: 178 KWAEDPSAIFGV---VLTPTRELALQIYEQFKAISSPQSLKAILVTGGSDMRAQAIAMAQ 234

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILV--------IDEADRMLDMGFIPYIQNITSL 173
              V+I TPGR+ DH              V                    +P ++   S+
Sbjct: 235 RPHVIIATPGRLADHIRTSGEDTICGLRRVRFVVLDEADRLLHAAGPGSMLPDVEECLSV 294

Query: 174 VPFTRQTLL--FSATMTDELQ----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           +P   +     F+AT+T E++       +   Q     EV+T         H        
Sbjct: 295 LPPAAERQTLLFTATITPEVRALKTMPQKPGKQPVFVCEVDTQMLAIPATLHQTHIQIPI 354

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             K+  L   LL   +  K  IIFCN+      L H L      V ++H  + QR R+  
Sbjct: 355 THKEHYLHVFLLTEANKDKTIIIFCNRTATADYLHHLLRLLDHRVTSLHSKLPQRQRIDN 414

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L+ F+    +++VA+D+AARGLDIP+V  V N+D+P   ++YIHR+GRT RAGR G++ T
Sbjct: 415 LARFRASAARILVATDVAARGLDIPEVSLVVNYDIPRDPDDYIHRVGRTARAGRTGESAT 474

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
            V + D++ + AIE  + +++D    +  +L   + + D  +    +K   + +   G +
Sbjct: 475 FVGQRDVELVLAIENRVGRQMDAWEEEGVNLETRVIR-DALKVVSEKKREALLEVEEGKE 533

Query: 408 ---RRKKNYSSQKSH 419
              +RK+     ++ 
Sbjct: 534 VGGKRKRAKMKLRAE 548


>gi|320540013|ref|ZP_08039670.1| putative ATP-dependent RNA helicase, specific for 23S rRNA
           [Serratia symbiotica str. Tucson]
 gi|320029936|gb|EFW11958.1| putative ATP-dependent RNA helicase, specific for 23S rRNA
           [Serratia symbiotica str. Tucson]
          Length = 461

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 129/403 (32%), Positives = 214/403 (53%), Gaps = 11/403 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L  + +  +   GYV+ TP+Q+  +P +L+  DV   A+TG+GKTA+F + +L 
Sbjct: 5   SFSSLPLPAEQLANLNQLGYVEMTPVQLAALPAILKGQDVRAKAKTGSGKTAAFGIGVLD 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            +      +   + LIL PTRELA Q++    +  +       L + G  P   Q   L 
Sbjct: 65  NINVA---LVSTQALILCPTRELADQMSKELRRLARFTQNIKILTLCGGQPLGPQLDSLV 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRIL+H  +  L++  +++LV+DEADRMLDMGF   I  + S  P  RQT
Sbjct: 122 HAPHIVVGTPGRILEHLRKKTLVLEMLKVLVLDEADRMLDMGFADDIDEVISETPPQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT   ++++         +R  +       +         Y   + + A L   + 
Sbjct: 182 LLFSATYPADIER----ISARVQREPLKIEVDNGDEQTTIEQRFYETTANQRAALLVSVI 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + ++FCN K++   +  +LE  G SV A+HG+++QR R ++L  F   + +++V
Sbjct: 238 RHYQPASCVVFCNTKRDCQTVFEALEAYGISVLALHGDLEQRERDQVLVRFTNRSCRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V N+++    + ++HRIGRTGRAGRHG A +L   +++    AI
Sbjct: 298 ATDVAARGLDITELELVVNYELAFDPQVHVHRIGRTGRAGRHGLAISLCTPQEMVRAHAI 357

Query: 361 EKLIEKKVDWLN-GDLSSL--NPPLEKIDIAQHNHARKNNPIP 400
           E  ++ K+ W+   +LS +   P   ++     +  RK    P
Sbjct: 358 EDDMQMKITWVPVSELSVVATTPLEAEMTTLCIDGGRKAKIRP 400


>gi|198475917|ref|XP_001357204.2| GA21521 [Drosophila pseudoobscura pseudoobscura]
 gi|198137464|gb|EAL34273.2| GA21521 [Drosophila pseudoobscura pseudoobscura]
          Length = 404

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F + +L 
Sbjct: 32  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATFSIAILQ 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     VR  + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 92  QIDTA---VRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L   +I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 149 GCHVVVGTPGRVYDMINRKVLRTQHIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F++ P  I V     T E I+  +V    +  K   L       
Sbjct: 209 LLSATMPPDVLEVSRCFMREPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDL--YD 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 267 TLSITQSVIFCNTRRKVDQLTQEMSSHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  +D + +  IE
Sbjct: 327 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIE 386

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 387 QFYHTTIEEMPANIADL 403


>gi|308496397|ref|XP_003110386.1| hypothetical protein CRE_05666 [Caenorhabditis remanei]
 gi|308243727|gb|EFO87679.1| hypothetical protein CRE_05666 [Caenorhabditis remanei]
          Length = 562

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 197/380 (51%), Gaps = 4/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F +  L  +V   +    + KPT IQ  + P+ +   D+  IA+TG+GKT +F+LP   
Sbjct: 134 EFNECPLPGQVHELLYGK-FQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALV 192

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            T  +  R R   P  L+L PTRELA QV +    +  +  L +  L GG     Q + L
Sbjct: 193 HTTKQPHRQRGEGPSVLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDL 252

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG DV++ TPGR+LD  + G   M     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 253 ERGVDVVVATPGRLLDFLDNGTTNMKRCSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 312

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQL 238
           TL+FSAT   E++ ++ +F ++   + V +    A       V    ++ K+   +    
Sbjct: 313 TLMFSATWPKEVRSMASDFQKDAAFLNVGSLELAANHNITQVVDILEEHGKQAKLMDLLN 372

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     IIF   K+    L  ++ + G+    IHG+ +Q  R  +L  FK G   +
Sbjct: 373 QIMNQKECKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPI 432

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLD+ D+  V N+D PN +E+Y+HRIGRTGR  + G A+T     +     
Sbjct: 433 LLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRRDKKGTAYTFFTHTNASKAK 492

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + K++++    +   L  +
Sbjct: 493 DLLKVLDEAKQTVPQALRDM 512


>gi|167521868|ref|XP_001745272.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776230|gb|EDQ89850.1| predicted protein [Monosiga brevicollis MX1]
          Length = 552

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 126/456 (27%), Positives = 221/456 (48%), Gaps = 29/456 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            FA L LS      +  AGY +PT IQ   +   L+  DV   A+TG+GKT +F++P + 
Sbjct: 38  KFAQLPLSSATQRGLKKAGYTRPTEIQRDALIKALKGQDVLAAAKTGSGKTLAFLIPVLE 97

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  +  ++      LI+ PTRELA Q  +   K G  ++++  L++GG   E +   + 
Sbjct: 98  GLFRQRWSKPDGVGGLIISPTRELALQTYEVLTKIGCFHDMSAGLVVGGTTLEREKAVIS 157

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++      +           +N+++LV+DEADR+LDMGF   +  I   +P  RQT
Sbjct: 158 NTNIIICTPGRLLQHMDETFGFSCDNLQMLVLDEADRILDMGFAKTLNAILENLPKQRQT 217

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT T  ++ ++   L+ P+ I V+    TA   +          ++K  +L   ++
Sbjct: 218 MLFSATQTKSVKDLARLSLKMPEFISVHEQDKTATPHKLVQAYMTVPLNQKLDVLFSFIR 277

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQL 298
           S   +   ++F +  K V  +  +L +    V   A++G   Q  R+ I ++F + T  +
Sbjct: 278 SHVNV-KMLVFVSSCKQVRFIYETLRRMRPGVPLLALYGKQKQAKRVAIYNDFSKKTHAV 336

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLD P V  VF  D P     YIHR+GRT R G+ GKA   +   +   + 
Sbjct: 337 LLATDIAARGLDFPSVDWVFQLDCPEDVATYIHRVGRTARYGKEGKALLTLLPSESAMV- 395

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ-KSTGFDRRKKNYSSQK 417
             ++L E+KV+ ++ +                N ++  +  P+ K+   +  +  Y +QK
Sbjct: 396 --QQLAERKVEVVSTEA---------------NASKIKSITPRLKAFCAESPELKYLAQK 438

Query: 418 SHIP------LKESEKISKLQQDIQENDADSLGFRG 447
             I       L+ ++++ ++ +   E  A SLG   
Sbjct: 439 CFISYTRSVFLQPNKEVFRIDELPLEEFALSLGLPA 474


>gi|145349792|ref|XP_001419312.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579543|gb|ABO97605.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 481

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 122/456 (26%), Positives = 204/456 (44%), Gaps = 26/456 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            FA L +S     A+ +  + + T IQ  T+P  L   DV G A+TG+GKT ++V+P + 
Sbjct: 3   KFAHLPISQATKAALRECKFKEMTAIQRATLPHALCGRDVLGAAKTGSGKTLAYVVPLIE 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           ++  K   R      L++ PTRELA Q+     K G  + ++  LLIGG   + +  ++ 
Sbjct: 63  SLWRKKWGRQDGVGALVISPTRELAIQIFQCLTKVGARHTMSAGLLIGGKDVQEEANRVN 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      +             +++LV+DEADRMLD+GF   +  I   +P  RQT
Sbjct: 123 KMNILVCTPGRLLQHMDETPMFDCVTLQMLVLDEADRMLDLGFTKTLNAIIDNLPKNRQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT T  ++ ++   L++P+ + V+  S  +   +   + T     KK   +     
Sbjct: 183 LLFSATQTKSVKDLARLGLKDPEYLSVHAESVHSTPPKLQQMVTTCALEKKI-EVLWSFI 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQL 298
                   ++F +  K V  +    ++    V    IHG + Q  R  +  NF      +
Sbjct: 242 KTHLNAKTLVFFSSCKQVKFVYEIFKRMRPGVPLQCIHGRLKQARRQGVFYNFCNAKETV 301

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+A+RGLD P V  V   D P     YIHR+GRT R    GK   ++   +   + 
Sbjct: 302 LFATDVASRGLDFPSVDWVVQADCPEDVATYIHRVGRTARYTAAGKGLLMLTPGESHFMK 361

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK--NYSSQ 416
            +E                   PL+ I +   N  ++++ I     G   +     Y SQ
Sbjct: 362 ELE---------------VAKVPLKPIKL---NPKKQSSRIQSSMQGLLSKDSDLKYLSQ 403

Query: 417 KSHIPLKESEKISKLQQ--DIQENDADSLGFRGNMP 450
           ++ I    S  + K ++  DI+  D D+  F   +P
Sbjct: 404 RAVICYLRSVYLQKNKKVFDIKSIDMDAYAFSMGLP 439


>gi|296212991|ref|XP_002753123.1| PREDICTED: ATP-dependent RNA helicase DDX54, partial [Callithrix
           jacchus]
          Length = 471

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 133/382 (34%), Positives = 202/382 (52%), Gaps = 10/382 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 98  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 158 LKTHSAQTGA-RALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I + +P   QT+L
Sbjct: 217 PDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVL 276

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +   E ++  F     + +K   LL  L    
Sbjct: 277 FSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSF-FLVREDTKAAVLLHLLRNVV 335

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K +   L   L  Q  S   I+  +D  +R   L+ F  G    ++ +
Sbjct: 336 RPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSALIVT 395

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA ++I ++  +  
Sbjct: 396 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHL 455

Query: 363 LIEKKVDWLNGDLSSLNPPLEK 384
            + + +        +L  PLE+
Sbjct: 456 FLGRSL--------TLAQPLEE 469


>gi|156396703|ref|XP_001637532.1| predicted protein [Nematostella vectensis]
 gi|156224645|gb|EDO45469.1| predicted protein [Nematostella vectensis]
          Length = 700

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 125/366 (34%), Positives = 202/366 (55%), Gaps = 3/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGLS  V   V+  GY  PTPIQ KT+PLV+   DV  +A+TG+GKTA+F++PM   
Sbjct: 21  FQSLGLSFPVFKGVMKKGYKVPTPIQRKTLPLVMDGKDVVAMARTGSGKTAAFLIPMFEK 80

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+V   R LIL PTRELA Q     ++ G+   L  ++++GG   E Q   +   
Sbjct: 81  LQTHTAKVG-IRALILSPTRELALQTQKFIKELGRFTGLKSSVILGGDSLEGQFAAIHTN 139

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR L      +L ++++E +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 140 PDIVVATPGRFLHVVMEMELKLSSVEYVVFDEADRLFEMGFAEQLHEIIHRLPESRQTLL 199

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L   ++  L +P  + ++  +  +E ++        +       L Q +   
Sbjct: 200 FSATLPRLLVDFAKAGLCDPALVRLDVDTKLSEQLKVSDYVFSLELYTALMHLLQNVIKP 259

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  +IF   K +V  L   L   G     ++ ++DQ +R   +  F+     +MV +
Sbjct: 260 T--EQTLIFAATKHHVEYLKEMLLSGGIDCSYVYSSLDQTARTINVGKFQHKKTMVMVVT 317

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP + +V NF  P +A+ ++HR+GR  RAGR G A++LVA +++ H+  +  
Sbjct: 318 DVAARGIDIPMLDNVINFHFPPKAKLFVHRVGRVARAGRSGTAYSLVANDEVAHLLDLHL 377

Query: 363 LIEKKV 368
            + + +
Sbjct: 378 FLGRPL 383


>gi|262392485|ref|YP_003284339.1| ATP-dependent RNA helicase DbpA [Vibrio sp. Ex25]
 gi|262336079|gb|ACY49874.1| ATP-dependent RNA helicase DbpA [Vibrio sp. Ex25]
          Length = 459

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 155/461 (33%), Positives = 244/461 (52%), Gaps = 21/461 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL+P ++  +    Y   TPIQ  ++P +L+  DV G  +TG+GKTA+F L +L+
Sbjct: 5   TFDQVGLNPALLATLDSLNYTHMTPIQALSLPAILKHRDVIGQGKTGSGKTAAFGLGVLS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+   +L+L PTRELA QVA      G+  +    L +  G+P   Q   LE
Sbjct: 65  NLNVKRFRVQ---SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH  +G++ ++ +  LV+DEADRMLDMGF   +  I    P  RQT
Sbjct: 122 HGAHILVGTPGRILDHLEKGRINLSELNTLVLDEADRMLDMGFQDALDAIIDAAPKQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  ++++++++  +Q P+ I+V +   T +T          + S+        L 
Sbjct: 182 LLFSATFPEKIEQIAQRIMQTPEVIKVES---THDTSSIAQHFYKVEGSEARDEALANLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++FCN KK V ++   L ++GFSV  IHG+++QR R + L  F   ++ ++V
Sbjct: 239 LTHQPESAVVFCNTKKEVQSVADELHRKGFSVIDIHGDLEQRERDQALVQFANKSVSILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+   ++D   +  I
Sbjct: 299 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARI 358

Query: 361 EKLIEKKVDWLNGDL---SSLNPPLEKIDIAQHNHARKNNPIPQKS----TGFDRRKKNY 413
           E+ +E  +D +   L   S+  P   K+     +  +K    P       TG +    + 
Sbjct: 359 EEYLE--MDVVPATLPAKSNQQPYQAKMVTINIDGGKKQKVRPGDILGCLTGKNGIPGSQ 416

Query: 414 SSQKSHIPLK-----ESEKISKLQQDIQENDADSLGFRGNM 449
             +    P++     E     K  Q I         FR  +
Sbjct: 417 VGKIHLFPMRAYVAVEKSAAKKALQTISNGKMKGRQFRARL 457


>gi|170030308|ref|XP_001843031.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167866923|gb|EDS30306.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 404

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+GL  +++  +   G+ KP+ IQ + I   ++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 32  NFDDMGLKEQLLRGIYAYGFEKPSAIQQRAIMPCIKGHDVIAQAQSGTGKTATFSIAILQ 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G          IGG       +KLE 
Sbjct: 92  QIDTNIPE---CQALILAPTRELATQIQKVVIALGDYLQAQCHACIGGTNVRDDMRKLEM 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D  +R  L  N+I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 149 GCHIVVGTPGRVHDMISRNFLRTNHIKLFVLDEADEMLSRGFKDQIQDVFRMLPNDVQVI 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+ +VS +F++ P +I V     T E I+  ++    +  K   L       
Sbjct: 209 LLSATMPSEVLEVSTHFMREPVKILVKKEELTLEGIKQFYIDVKQEGWKLGTLCDL--YD 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +  + F+V ++HG++DQR R  I+  F+ G+ ++++ 
Sbjct: 267 TLSITQAVIFCNTRRKVDQLTADMAAESFTVSSMHGDMDQRDRDLIMKQFRTGSSRVLIT 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V + D + +  IE
Sbjct: 327 TDLLARGIDVQQVSLVINYDLPTLRENYIHRIGRGGRFGRKGVAINFVTEADKRVLTDIE 386

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     ++ +  +L+ +
Sbjct: 387 KHYNTTIEEMPANLADM 403


>gi|114687995|ref|XP_528902.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Pan
           troglodytes]
 gi|332860426|ref|XP_003317435.1| PREDICTED: probable ATP-dependent RNA helicase DDX53 [Pan
           troglodytes]
          Length = 631

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 126/407 (30%), Positives = 215/407 (52%), Gaps = 13/407 (3%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI---LEKG 66
           P ++ +++  G VKPTPIQ +  P++LQ  D+  +AQTGTGKT S+++P           
Sbjct: 231 PDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIEVAQTGTGKTLSYLMPGFIHLDSQPIS 290

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           R +   P  L+L PTR+LA  V     KY      ++ +  GG     Q + + +G D++
Sbjct: 291 REQRNGPGMLVLTPTRKLALHVEAECSKYSYKGLKSICVY-GGRNRNGQIEDISKGVDII 349

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR+ D      + + +I  LVIDEAD+MLDM F P I  I   V   RQT++ SAT
Sbjct: 350 IATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIMKILLDVRPDRQTVMTSAT 409

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             D +++++ ++L++P  + V   +  A       +    +  K+    Q+ +++     
Sbjct: 410 WPDTVRQLALSYLKDPMMVYVGNLNLVAVNTLKQNIIVTTEKEKQALT-QEFVENMSPND 468

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             I+F +QK    +L      QG S  ++HGN +Q  R + + +FK G I++++ +D+ +
Sbjct: 469 KVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDRERAVEDFKSGNIKILITTDIVS 528

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           +GLD+ DV HV+N+D P   + Y+HR+G  GR G+ G + TL+ + D K    + K++++
Sbjct: 529 QGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELIKILDR 588

Query: 367 KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
               +  DL  +    E+  + Q    RK      +S    +R+K +
Sbjct: 589 ANQSVPEDLVVMA---EQYKLNQQKRHRK-----TRSRKHGQRRKKF 627


>gi|254230057|ref|ZP_04923456.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|151937445|gb|EDN56304.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
          Length = 471

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 155/461 (33%), Positives = 244/461 (52%), Gaps = 21/461 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL+P ++  +    Y   TPIQ  ++P +L+  DV G  +TG+GKTA+F L +L+
Sbjct: 17  TFDQVGLNPALLATLDSLNYTHMTPIQALSLPAILKHRDVIGQGKTGSGKTAAFGLGVLS 76

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+   +L+L PTRELA QVA      G+  +    L +  G+P   Q   LE
Sbjct: 77  NLNVKRFRVQ---SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLE 133

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH  +G++ ++ +  LV+DEADRMLDMGF   +  I    P  RQT
Sbjct: 134 HGAHILVGTPGRILDHLEKGRINLSELNTLVLDEADRMLDMGFQDALDAIIDAAPKQRQT 193

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  ++++++++  +Q P+ I+V +   T +T          + S+        L 
Sbjct: 194 LLFSATFPEKIEQIAQRIMQTPEVIKVES---THDTSSIAQHFYKVEGSEARDEALANLL 250

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++FCN KK V ++   L ++GFSV  IHG+++QR R + L  F   ++ ++V
Sbjct: 251 LTHQPESAVVFCNTKKEVQSVADELHRKGFSVIDIHGDLEQRERDQALVQFANKSVSILV 310

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+   ++D   +  I
Sbjct: 311 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARI 370

Query: 361 EKLIEKKVDWLNGDL---SSLNPPLEKIDIAQHNHARKNNPIPQKS----TGFDRRKKNY 413
           E+ +E  +D +   L   S+  P   K+     +  +K    P       TG +    + 
Sbjct: 371 EEYLE--MDVVPATLPAKSNQQPYQAKMVTINIDGGKKQKVRPGDILGCLTGKNGIPGSQ 428

Query: 414 SSQKSHIPLK-----ESEKISKLQQDIQENDADSLGFRGNM 449
             +    P++     E     K  Q I         FR  +
Sbjct: 429 VGKIHLFPMRAYVAVEKSAAKKALQTISNGKMKGRQFRARL 469


>gi|297288380|ref|XP_001089984.2| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 1
           [Macaca mulatta]
          Length = 550

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 121/493 (24%), Positives = 206/493 (41%), Gaps = 41/493 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F  +GL P+++ AV D G+ +PT IQ K IPL L+  D+   A+TG+GKTA++ +PM   
Sbjct: 13  FEHMGLDPRLLQAVTDMGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 72

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQ 115
            L     G    +  R L+L PT+ELA Q     ++        V +            +
Sbjct: 73  LLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSASQR 132

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              +E+   V+      +         L +++E+LV+DEAD +   GF   ++++   +P
Sbjct: 133 AMLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLP 192

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q  L SAT  +++Q + E  L NP  +++             F         K  LL
Sbjct: 193 RIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLL 252

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL+        ++F N  +    L   LE+     C ++G +  RSR  I+S F +G 
Sbjct: 253 YALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGF 312

Query: 296 IQL---------------------------MVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
                                                ARG+D   V  V NFD+P   E 
Sbjct: 313 YDCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEA 372

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHR GRT RA   G   T V   +  H+  IE+L+    +     L      +E+I+  
Sbjct: 373 YIHRAGRTARANNPGIVLTFVLPTEQSHLGKIEELL--SGENRGPILLPYQFRMEEIEGF 430

Query: 389 QHNHARKNNPIPQKSTGFDR----RKKNYSSQKSHIPLKESEK-ISKLQQDIQENDADSL 443
           ++        + +++    R    +++   S+K     +++ + +  L+ D+  + A   
Sbjct: 431 RYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVK 490

Query: 444 GFRGNMPAFMLPK 456
              G++P +++P 
Sbjct: 491 PHLGHVPDYLVPP 503


>gi|323524408|ref|YP_004226561.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323381410|gb|ADX53501.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
          Length = 467

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 143/405 (35%), Positives = 209/405 (51%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L    +  +   GYV+ TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 11  FNQLPLPAAALANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + ++L PTRELA QV     +  +       L +  G P   Q   LE 
Sbjct: 71  LDA---RKFAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  RG L + ++  LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 128 GAHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVRQCPKERQTL 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K+S+ F     R       +            Y     +      LL +
Sbjct: 188 LFSATYPEGIVKLSQQF----LRNPKEVKLAERHDDTKIRQRFYEVSEDERLHAVGLLLN 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 244 HYRPVSTLAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  +  IE
Sbjct: 304 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGGIE 363

Query: 362 KLIEKKVDWLN-GDLSS-----LNPPLEKIDIAQHNHARKNNPIP 400
           +  +++V+W    +L+S     L PP+E + I      RK    P
Sbjct: 364 QAQKREVEWHKLSELTSTSNEPLLPPMETLQIL---GGRKEKIRP 405


>gi|24584994|ref|NP_609888.2| CG10333 [Drosophila melanogaster]
 gi|22946759|gb|AAF53680.2| CG10333 [Drosophila melanogaster]
 gi|60677727|gb|AAX33370.1| RH55640p [Drosophila melanogaster]
          Length = 822

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 125/433 (28%), Positives = 203/433 (46%), Gaps = 34/433 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + G   +++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKT +F++P+L+
Sbjct: 395 SWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLS 454

Query: 62  ILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            ++            + P  +I+ PTRELA Q+ +   K+G+   +   +++GG+  E Q
Sbjct: 455 WIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQ 514

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I   +P
Sbjct: 515 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 574

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------------------- 214
            T           +     +    +  ++  + T +                        
Sbjct: 575 VTNLKPDTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSV 634

Query: 215 -ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            +  E      Y             + S+      IIF NQKK    L   LEK G++ C
Sbjct: 635 GKPTERTEQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSC 694

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            +HG   Q  R   L+  K G   ++VA+D+A RG+DI DV  V N+D+    E+Y HRI
Sbjct: 695 TLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRI 754

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           GRTGRAG+ G A + V K+D      +++ +          +S+  P L     AQH   
Sbjct: 755 GRTGRAGKTGCAISFVTKDDSALFYDLKQCVSA------SPVSTCPPELMNHPEAQHKPG 808

Query: 394 RKNNPIPQKSTGF 406
                  ++   F
Sbjct: 809 TVVTKKRREEKIF 821


>gi|6014947|sp|Q61655|DD19A_MOUSE RecName: Full=ATP-dependent RNA helicase DDX19A; AltName: Full=DEAD
           box RNA helicase DEAD5; Short=mDEAD5; AltName: Full=DEAD
           box protein 19A; AltName: Full=Eukaryotic translation
           initiation factor 4A-related sequence 1
 gi|407992|gb|AAA53629.1| RNA helicase [Mus musculus]
          Length = 478

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 177/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 92  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 151

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      R P+ L L PT ELA Q     E+ GK +               + +K+
Sbjct: 152 LSRVEPAD---RYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKV 208

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  +VP   Q
Sbjct: 209 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRIVPRNCQ 268

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V    +  K        L
Sbjct: 269 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREEK--FQALCNL 326

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 327 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 386

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 387 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 446

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 447 SMNILNRIQEHFNKKIERLDTD 468


>gi|332258725|ref|XP_003278445.1| PREDICTED: probable ATP-dependent RNA helicase DDX52 [Nomascus
           leucogenys]
          Length = 598

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 114/442 (25%), Positives = 209/442 (47%), Gaps = 29/442 (6%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     ++ +++  +LDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 161 TFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 220

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L++   +      LI+ PTRELA+Q+     K  +        +    +  +   
Sbjct: 221 PILMQLKQPANKGFR--ALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFG 278

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++    +    ++  ++E LV+DE+D++ + G   +        
Sbjct: 279 PKSSKKFDILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIF 338

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT   ++++  +  L N   + +   +S  ET+E   +   ++  K
Sbjct: 339 LACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSETGK 398

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +  +     ++F    +    L H L  +G +V  IH    Q+ R   + +
Sbjct: 399 LLAMRELVKKGFNPP--VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHS 456

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   
Sbjct: 457 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFT 516

Query: 351 KEDIKHIDAIEKLIEKK----VDWLNG--------DLSSLNPPLEKIDIAQHNH--ARKN 396
           ++D   + ++  +I++      +++ G            +  PLE+  I+        K 
Sbjct: 517 EDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPKCFLEKA 576

Query: 397 NPIPQKSTGFDRRKKNYSSQKS 418
               +K TG + RKK     KS
Sbjct: 577 KDKRKKVTGQNNRKKVALEDKS 598


>gi|221064954|ref|ZP_03541059.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
 gi|220709977|gb|EED65345.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
          Length = 469

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 141/392 (35%), Positives = 210/392 (53%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LSP+++  +   GY + TPIQ  ++PL LQ  D+   A TG+GKTA+F LPM+  
Sbjct: 16  FSALPLSPEMLANLQQLGYAQMTPIQAASLPLTLQGKDLIAQASTGSGKTAAFGLPMVDR 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L      V+    L+L PTRELA QVA    +  +  +    + +  G+P   Q   LE 
Sbjct: 76  LNPRWFAVQ---ALVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRNQIASLEN 132

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++D   RGKL + N++ LV+DEADRMLDMGF+  I+ +    P  RQTL
Sbjct: 133 GAHIVVGTPGRVMDLMERGKLDIGNLKTLVLDEADRMLDMGFLGDIETVVRQCPVDRQTL 192

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + +  ++  F     R       +T  +        Y   +++       L +
Sbjct: 193 LFSATYPEGIASLASRF----MRDPQTVKVATQHSAGKIEQRWYEVGAREKVATVARLLA 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ I FCN K+   ++   L+ QGFS  A+ G ++QR R ++L  F   +  ++VA
Sbjct: 249 HFRPESSIAFCNTKQQCRDVVSELQAQGFSALALFGELEQRERDEVLVQFANKSCSVLVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V N DV    E +IHRIGRTGR    G A  LV+ +++  +  IE
Sbjct: 309 TDVAARGLDIADLSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLVSMDEMGSVGKIE 368

Query: 362 KLIEKKVDWLNGDL------SSLNPPLEKIDI 387
           +L  +   +   D         L PP+  I I
Sbjct: 369 QLQGRASQFFPVDELTPAAGGGLLPPMMTIQI 400


>gi|325923904|ref|ZP_08185503.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
 gi|325545614|gb|EGD16869.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
          Length = 458

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 127/381 (33%), Positives = 189/381 (49%), Gaps = 6/381 (1%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F+ L LSP +   +   GY   TPIQ +++P +LQ  DV   A TG+GKTA+F L +
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  L+    R +                        G      V L  G           
Sbjct: 61  LQKLDPALTRAQALVLC-PTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I S     RQ
Sbjct: 120 AHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT  D ++ ++   L++P  I V    +  E  +  F        K  A L    
Sbjct: 180 SLLFSATFPDIIRTLAREILKDPIEITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLL-- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   ++ ++FCN +K V  +  SL++ GFS  A+HG+++QR R ++L  F   +  ++
Sbjct: 238 --RFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+ G A +LVA  +     A
Sbjct: 296 VASDVAARGLDVEDLAAVVNYELPTDTETYRHRIGRTARAGKRGLALSLVASRETGRAQA 355

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           +E    + + W    L++  P
Sbjct: 356 LEAEQGQPLKWSRAPLATARP 376


>gi|198476804|ref|XP_001357483.2| GA20225 [Drosophila pseudoobscura pseudoobscura]
 gi|198137859|gb|EAL34553.2| GA20225 [Drosophila pseudoobscura pseudoobscura]
          Length = 424

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 98/394 (24%), Positives = 171/394 (43%), Gaps = 14/394 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 43  FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE           +                               G    + +       
Sbjct: 103 LEPADNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGLAIQKDEETLKSGT 162

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM-GFIPYIQNITSLVPFTRQTL 181
             +++ TPGRIL      KL + +++  V+DE D+ML+       +Q I    P  +Q +
Sbjct: 163 PHIVVGTPGRILALIRNKKLNLKHLKHFVLDECDKMLEQLDMRRDVQEIFRSSPHGKQVM 222

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT++ +++ V + F+Q+P  + V+  +               +  K   L +     
Sbjct: 223 MFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFEL--LD 280

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  +IF    +  V L   L +Q F    IH  + Q  R+     FK+   +++VA
Sbjct: 281 VLEFNQVVIFVKSVQRCVALAMLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVA 340

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAI 360
           ++L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ + D K ++ +
Sbjct: 341 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDDNDAKILNEV 400

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           +   +  +  L           E+ID++ +   R
Sbjct: 401 QDRFDVNISELP----------EEIDLSTYIEGR 424


>gi|254228859|ref|ZP_04922281.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262396791|ref|YP_003288644.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|151938536|gb|EDN57372.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262340385|gb|ACY54179.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
          Length = 416

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 141/417 (33%), Positives = 223/417 (53%), Gaps = 16/417 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            FADLGL P +V  +    Y +PTPIQ  TIP +L+  D+ G A TG+GKTA+F LP   
Sbjct: 9   TFADLGLIPTLVERLEALEYSQPTPIQSHTIPYILEGKDIVGGANTGSGKTAAFSLPILQ 68

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV--ALLIGGIPFEAQ 115
            ++   E    R      LIL PTRELA+QVA N + Y  +    +    + GG+    Q
Sbjct: 69  KIVQQDETNHRRGNFVSHLILVPTRELASQVAYNVKSYSYHLRDKIKTVAVFGGVSVNPQ 128

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G D+++ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  I +L+P
Sbjct: 129 MLALRGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILALLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +QTLLFSAT  D++  +S++ L++P  +++ +  ++        V    + +    L+
Sbjct: 189 EKKQTLLFSATFPDKVTTLSQHLLRDPVEVQLQSAEASTLVQRVFSVNKGEKTAVLAHLI 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q        +  +IF N K    +L   L K+G +    HG+  Q +R ++L  FK G 
Sbjct: 249 KQHQW-----RQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKSGE 303

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           IQ+++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G   +L+  +D  
Sbjct: 304 IQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDDYH 363

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           H   IEK  + +++    +   +       D ++              TG  ++K+N
Sbjct: 364 HFKVIEKKNKFQLEREQVEGFEVED-----DQSEAYFLPMKPRAKPAGTGKKKKKRN 415


>gi|303285500|ref|XP_003062040.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456451|gb|EEH53752.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 362

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 107/362 (29%), Positives = 186/362 (51%), Gaps = 7/362 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
            + + G+ +P+PIQ ++IP+ L   D+   A+ GTGKTA+F +P+L  ++  +  ++   
Sbjct: 2   GIFEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFTIPVLEKVDVSKKIIQAI- 60

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
             +L PTRELA Q +   ++ GK+ ++ V +  GG   +    +L +   +++ TPGR++
Sbjct: 61  --LLVPTRELALQTSQVAKELGKHLDVQVMVTTGGTSLKDDIMRLHQPVHIVVATPGRLV 118

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D  ++    +NN  +LV+DEAD++L   F P I  +   +P  RQ LL+SAT    +++ 
Sbjct: 119 DLASKNVAKLNNATMLVMDEADKLLSPEFQPVIAQLIDFLPRNRQILLYSATFPVTVKE- 177

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
              F     R           T++           K+       L S+  +   IIFCN 
Sbjct: 178 ---FKDRYLRKPYVINLMEELTLKGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNS 234

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
              V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V+SDL  RG+DI  V
Sbjct: 235 VNRVELLAKKITELGYSCFYIHAKMLQSHRNRVFHDFRNGACRNLVSSDLFTRGIDIQSV 294

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
             V NFD P  +E Y+HR+GR+GR G  G +  L+  +D  ++  IE+ +  ++  +   
Sbjct: 295 NVVINFDFPKNSETYLHRVGRSGRFGHLGISVNLITYDDRFNLFRIEQELGTEIQQIPPV 354

Query: 375 LS 376
           + 
Sbjct: 355 ID 356


>gi|47222980|emb|CAF99136.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 509

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 117/396 (29%), Positives = 180/396 (45%), Gaps = 48/396 (12%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L P ++  +   G V PTPIQI+ +P VL   D+ GIA TG+GKT  F LP++ 
Sbjct: 101 SFREMKLPPAILKGLKKKGIVHPTPIQIQGMPTVLSGRDMIGIAFTGSGKTLVFTLPIIM 160

Query: 62  IL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGK------NYNLTVALLIGGI 110
                       +   P  LI+ P+RELA Q     E Y K         L  AL IGG+
Sbjct: 161 FCLEQEKRLPFCKREGPYGLIICPSRELARQTHGIIEYYCKLLEEEGAPQLRTALCIGGM 220

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + ++ G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 221 SVKEQMEVIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEEDIRTI 280

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLL+SATM  ++                                    ++K
Sbjct: 281 FSYFKGQRQTLLYSATMPKKI----------------------------------QNFAK 306

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
              +    +         +    + + V     +                Q  R K +  
Sbjct: 307 SALVKPITINVGRAGAASLDVIQEVEYVKE--EAKMVYLLECLQKTPPPYQEERTKAIEA 364

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FKEG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G+ G A T + 
Sbjct: 365 FKEGKKDVLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATTFIN 424

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
           K  D   +  ++ L+ +    +   L  L    E +
Sbjct: 425 KGCDESVLMDLKALLVEAKQKVPPVLQVLQSGDETM 460


>gi|66810480|ref|XP_638950.1| hypothetical protein DDB_G0283661 [Dictyostelium discoideum AX4]
 gi|74897085|sp|Q54QS3|DDX3_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx3; AltName:
           Full=DEAD box protein 3
 gi|60467576|gb|EAL65597.1| hypothetical protein DDB_G0283661 [Dictyostelium discoideum AX4]
          Length = 712

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 135/434 (31%), Positives = 213/434 (49%), Gaps = 31/434 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            FAD+ L   ++  +  A Y KPTP+Q   +P++L+  D+   AQTG+GKTA+F+ P+  
Sbjct: 248 SFADVDLGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAAFLFPIIS 307

Query: 60  ----------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                         + G  R   PR L+L PTRELA Q+ D   K+     ++  ++ GG
Sbjct: 308 GILLDGAPEAPPAYKPGVPRAACPRALVLAPTRELAQQIFDEANKFSYGSPVSSVVIYGG 367

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q  +L+RG D+L+ T GR++D   RG++ ++ I+ LV+DEADRMLDMGF P I+ 
Sbjct: 368 AEVFHQINELDRGCDILVATTGRLVDLLMRGRVSLSKIKYLVLDEADRMLDMGFEPQIRQ 427

Query: 170 ITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I S             +FSAT   ++Q ++ +FL N   ++V    +T           Y
Sbjct: 428 IISEFDMPGCRDRQTLMFSATFPKQIQNLAADFLYNYIFLKVGVVGTTQNIT---QRIEY 484

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
                K + L   L    +    +IF   K++   L + L ++ F    IHG++ Q  R 
Sbjct: 485 VVEEDKNSYLLDYLSGLKSDGLCLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERE 544

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L +F+      +VA+D+A+RGL I +V  V NFD+P     Y+HRIGRTGRAG+ G A
Sbjct: 545 NALQSFRSFATPFLVATDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLA 604

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            +   +++      + KL++            +    EK+      H  + +  P  S  
Sbjct: 605 ISFFNEKNKPVGAELLKLMK-------ASNQDIPDWFEKM-----VHNLRMSKGPSNSKS 652

Query: 406 FDRRKKNYSSQKSH 419
                K+Y+S  + 
Sbjct: 653 NSPFNKSYNSHHNR 666


>gi|222622384|gb|EEE56516.1| hypothetical protein OsJ_05798 [Oryza sativa Japonica Group]
          Length = 648

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 102/381 (26%), Positives = 186/381 (48%), Gaps = 5/381 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  GL  K+V  +  AGYV PTP+Q++ IP  +    +   A TG+GKTASF++P++
Sbjct: 182 MCFSSSGLPEKLVLNLEAAGYVMPTPVQMQVIPSSICNRSLLVSADTGSGKTASFLVPII 241

Query: 61  TILEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                         + P  ++L PTREL  QV +  +  GK      AL++GG P   Q 
Sbjct: 242 AHCSHVRSERCTDKQGPLAIVLAPTRELCLQVEEQAKVLGKGLPFKTALVVGGDPLAQQI 301

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            ++E G ++++ TPGR++D   +  + +N +++ V+DE D +L+ GF   +         
Sbjct: 302 YRIENGIELIVGTPGRLIDLLMKHNVDLNKVDVFVLDEVDCLLERGFRDQV-MQIFQALS 360

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q ++FSAT+  E++K+S +  +N   I    PS   ++++   +   ++  K+     
Sbjct: 361 HPQVMMFSATVNSEVEKMSNSLAKNAIHISCGNPSRPNKSVKQVVIWVESKQKKQKIFEI 420

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
              +        +   ++    +         G  V +IHG+     R + L  F  G +
Sbjct: 421 MTSKQHFKPPAVVFVSSRIGADLLSEAITVATGLKVVSIHGDKTMNERRESLRRFLTGEV 480

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++V + +  RG+D+  V  V  FD+PN  + Y+H++GR  R G  G A   V +ED   
Sbjct: 481 SVVVCTGVLGRGMDLLKVRQVILFDMPNSIDEYVHQVGRASRMGVEGMAIVFVNEEDRNL 540

Query: 357 IDAIEKLIEKKVDWLNGDLSS 377
              + ++++     +  +L++
Sbjct: 541 FRELVQILKTAGAPIPRELAN 561


>gi|218190271|gb|EEC72698.1| hypothetical protein OsI_06281 [Oryza sativa Indica Group]
          Length = 648

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 102/381 (26%), Positives = 186/381 (48%), Gaps = 5/381 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  GL  K+V  +  AGYV PTP+Q++ IP  +    +   A TG+GKTASF++P++
Sbjct: 182 MCFSSSGLPEKLVLNLEAAGYVMPTPVQMQVIPSSICNRSLLVSADTGSGKTASFLVPII 241

Query: 61  TILEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                         + P  ++L PTREL  QV +  +  GK      AL++GG P   Q 
Sbjct: 242 AHCSHVRSERCTDKQGPLAIVLAPTRELCLQVEEQAKVLGKGLPFKTALVVGGDPLAQQI 301

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            ++E G ++++ TPGR++D   +  + +N +++ V+DE D +L+ GF   +         
Sbjct: 302 YRIENGIELIVGTPGRLIDLLMKHNVDLNKVDVFVLDEVDCLLERGFRDQV-MQIFQALS 360

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q ++FSAT+  E++K+S +  +N   I    PS   ++++   +   ++  K+     
Sbjct: 361 HPQVMMFSATVNSEVEKMSNSLAKNAIHISCGNPSRPNKSVKQVVIWVESKQKKQKIFEI 420

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
              +        +   ++    +         G  V +IHG+     R + L  F  G +
Sbjct: 421 MTSKQHFKPPAVVFVSSRIGADLLSEAITVATGLKVVSIHGDKTMNERRESLRRFLTGEV 480

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++V + +  RG+D+  V  V  FD+PN  + Y+H++GR  R G  G A   V +ED   
Sbjct: 481 SVVVCTGVLGRGMDLLKVRQVILFDMPNSIDEYVHQVGRASRMGVEGMAIVFVNEEDRNL 540

Query: 357 IDAIEKLIEKKVDWLNGDLSS 377
              + ++++     +  +L++
Sbjct: 541 FRELVQILKTAGAPIPRELAN 561


>gi|109129173|ref|XP_001107762.1| PREDICTED: ATP-dependent RNA helicase DDX19B isoform 5 [Macaca
           mulatta]
          Length = 484

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL M
Sbjct: 98  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 157

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      + P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 158 LSQVEPAN---KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 214

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 215 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 274

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        L
Sbjct: 275 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 332

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 333 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 392

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 393 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 452

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 453 SMNILNRIQEHFNKKIERLDTD 474


>gi|109129181|ref|XP_001107827.1| PREDICTED: ATP-dependent RNA helicase DDX19B isoform 6 [Macaca
           mulatta]
          Length = 440

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL M
Sbjct: 54  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 113

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      + P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 114 LSQVEPAN---KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 170

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 171 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 230

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        L
Sbjct: 231 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 288

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 289 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 348

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 349 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 408

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 409 SMNILNRIQEHFNKKIERLDTD 430


>gi|109129171|ref|XP_001107893.1| PREDICTED: ATP-dependent RNA helicase DDX19B isoform 7 [Macaca
           mulatta]
          Length = 479

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL M
Sbjct: 93  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 152

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      + P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 153 LSQVEPAN---KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 209

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 210 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 269

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        L
Sbjct: 270 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 327

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 328 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 387

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 388 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 448 SMNILNRIQEHFNKKIERLDTD 469


>gi|143456026|sp|Q0E2Z7|RH41_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 41
 gi|46390396|dbj|BAD15860.1| putative DEAD box [Oryza sativa Japonica Group]
 gi|215701515|dbj|BAG92939.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215767715|dbj|BAG99943.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 536

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 102/381 (26%), Positives = 186/381 (48%), Gaps = 5/381 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  GL  K+V  +  AGYV PTP+Q++ IP  +    +   A TG+GKTASF++P++
Sbjct: 137 MCFSSSGLPEKLVLNLEAAGYVMPTPVQMQVIPSSICNRSLLVSADTGSGKTASFLVPII 196

Query: 61  TILEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                         + P  ++L PTREL  QV +  +  GK      AL++GG P   Q 
Sbjct: 197 AHCSHVRSERCTDKQGPLAIVLAPTRELCLQVEEQAKVLGKGLPFKTALVVGGDPLAQQI 256

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            ++E G ++++ TPGR++D   +  + +N +++ V+DE D +L+ GF   +         
Sbjct: 257 YRIENGIELIVGTPGRLIDLLMKHNVDLNKVDVFVLDEVDCLLERGFRDQV-MQIFQALS 315

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q ++FSAT+  E++K+S +  +N   I    PS   ++++   +   ++  K+     
Sbjct: 316 HPQVMMFSATVNSEVEKMSNSLAKNAIHISCGNPSRPNKSVKQVVIWVESKQKKQKIFEI 375

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
              +        +   ++    +         G  V +IHG+     R + L  F  G +
Sbjct: 376 MTSKQHFKPPAVVFVSSRIGADLLSEAITVATGLKVVSIHGDKTMNERRESLRRFLTGEV 435

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++V + +  RG+D+  V  V  FD+PN  + Y+H++GR  R G  G A   V +ED   
Sbjct: 436 SVVVCTGVLGRGMDLLKVRQVILFDMPNSIDEYVHQVGRASRMGVEGMAIVFVNEEDRNL 495

Query: 357 IDAIEKLIEKKVDWLNGDLSS 377
              + ++++     +  +L++
Sbjct: 496 FRELVQILKTAGAPIPRELAN 516


>gi|224139612|ref|XP_002323192.1| predicted protein [Populus trichocarpa]
 gi|222867822|gb|EEF04953.1| predicted protein [Populus trichocarpa]
          Length = 551

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 125/371 (33%), Positives = 205/371 (55%), Gaps = 6/371 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT---I 62
           LG+S ++V A+   G  K  PIQ   +   +Q  D+ G A+TGTGKT +F +P+L     
Sbjct: 47  LGISQEIVGALAKKGITKLFPIQRAVLEPAMQGKDMFGRARTGTGKTLAFGIPILDKILQ 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                 R R P  +++ PTRELA QV   F +   + ++T     GG P   Q + LE G
Sbjct: 107 FNAQHGRGRYPLGIVMAPTRELARQVEKEFREAAPSLDITCL--YGGTPISQQMRDLEYG 164

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGRI+D   RG L+++ ++ +V+DEAD+ML +GF+  I+ I S VP  R ++ 
Sbjct: 165 VDVVVGTPGRIIDLMKRGSLVLSEVQHVVLDEADQMLGVGFVDDIETILSSVPQKRHSMC 224

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   ++++   +L++P  I++   S           +  +    K ++L  L+   
Sbjct: 225 FSATMPSWIRELVRKYLKDPLTIDLVGDSDKKLAEGITLYSIASDLYAKASILGPLITEH 284

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F   K++   L +++ K      A+HG+I Q  R + LS F+EG   ++VA+
Sbjct: 285 AKGGKCIVFTETKRDADRLAYAMAKTYK-CEALHGDISQSVRERTLSGFREGHFNILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+P+V  + ++ +P  +E ++HR GRTGRAG+ G A  +  +++ + +  IE+
Sbjct: 344 DVAARGLDVPNVDLIIHYALPRCSETFVHRSGRTGRAGKKGTAILIYTQDESRQVRIIER 403

Query: 363 LIEKKVDWLNG 373
               K   L  
Sbjct: 404 DTGCKFLELPK 414


>gi|193705838|ref|XP_001944503.1| PREDICTED: ATP-dependent RNA helicase DDX19A-like [Acyrthosiphon
           pisum]
          Length = 464

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 103/393 (26%), Positives = 173/393 (44%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  L L P ++  V + GY  P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL M
Sbjct: 76  SFELLKLHPNLLKGVYEMGYNAPSKIQETALPLLLANPPQNLIAQSQSGTGKTAAFVLAM 135

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++     +  P+ + L PT ELA Q  +   K                    +  K+
Sbjct: 136 LSRVDP---DLHYPQVVCLSPTYELAIQTGEVAAKMSTYCPNIRLRYAVRGEDVEKGSKI 192

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E    V             +          ++ +    +   G       I  L+P T Q
Sbjct: 193 EEQIIVGTPGKVLDWATKYKFFNPKYIKVFVLDEADIMVDTQGHQDQSFRIRKLLPETCQ 252

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSAT T+++ + +         I +     T + I   +V    +  K        +
Sbjct: 253 MMFFSATYTEDVMRFANAIAPMSVIIRLKREEETLDNIRQYYVNCNNKEDK--YNALVNI 310

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC  KK  + L + + +QG +V  + G +  + R+ +L  F+EG  +++
Sbjct: 311 YGGVTIGQAMIFCQTKKMALWLVNQMAEQGHAVALLSGELTVQQRISVLDRFREGKEKVL 370

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLVA-KE 352
           V +++ +RG+DI  V  V NFD+P         + Y+HRIGRTGR G+ G A  LV+   
Sbjct: 371 VTTNVLSRGIDIEQVTIVINFDLPVTVTRDPDFDTYLHRIGRTGRFGKKGIAINLVSGSS 430

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
           D   +  IE+   K ++ LN D +     +EK+
Sbjct: 431 DHFVLKQIEEHFCKPIECLNTDNAD---DMEKL 460


>gi|67423413|dbj|BAD99524.1| VASA RNA helicase [Moina macrocopa]
          Length = 843

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 119/380 (31%), Positives = 186/380 (48%), Gaps = 15/380 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F   GL   V+  +  +GY KPTP+Q   I +VL R D+   A TG+GKTA+F++P+  
Sbjct: 410 SFETAGLRDLVLQNIKASGYTKPTPVQKGAIAVVLARRDLIASAVTGSGKTAAFLVPVVN 469

Query: 60  ----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                 +       V+ P  +I+ PTRELA Q+     K+  N  L   ++ GG     Q
Sbjct: 470 ILLEKQVQGAPSGEVQKPEVVIISPTRELAIQIHREARKFSHNSVLKSVIVYGGTQVSHQ 529

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G ++L+ TPGR+ D  ++G +  +N++  ++DEADRMLDMGF   I+ I     
Sbjct: 530 KSSLMNGCNILVGTPGRLKDFVDKGFIDFSNVQFFILDEADRMLDMGFGSDIEFIAQHPT 589

Query: 176 FTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            T        +FSAT  D++QK++  +L +   +           +   F     Q  + 
Sbjct: 590 MTPVGRRVTLMFSATFPDDVQKIAGKYLHDYVFVTTGNIGGMNPDVCQEFHEVQRQDKRN 649

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             +              I+F   KK    +   L    F   +IHG+  Q  R + L  F
Sbjct: 650 KLVEILRDLGN---SRVIVFVESKKTADFIAAFLANTQFQATSIHGDRLQSQREQALREF 706

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   ++VA+++AARGLDI  V +V N+D+P   E Y+HRIGRTGR G  G++ +    
Sbjct: 707 KSGQRNILVATNVAARGLDIAGVEYVINYDLPADIEEYVHRIGRTGRVGNAGRSISFYDP 766

Query: 352 E-DIKHI-DAIEKLIEKKVD 369
           + D  +    +++L+  + D
Sbjct: 767 DRDAPNAGRLVQRLVASEAD 786


>gi|302698637|ref|XP_003038997.1| hypothetical protein SCHCODRAFT_65145 [Schizophyllum commune H4-8]
 gi|300112694|gb|EFJ04095.1| hypothetical protein SCHCODRAFT_65145 [Schizophyllum commune H4-8]
          Length = 437

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 97/377 (25%), Positives = 162/377 (42%), Gaps = 5/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ ++ D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 56  FRDFLLKPELLRSISDLGFEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQ 115

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER- 121
           LE     V +                   F KY     ++       +  +A+  + +  
Sbjct: 116 LEPVDGEVAVIVLCHTRELAFQIRNEYTRFAKYMPQIRVSTFYGGTPVSKDAEILRDKNA 175

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM-GFIPYIQNITSLVPFTRQT 180
              +++ TPGR+        L   +++  V+DE D+ML+       +Q I    P  +Q 
Sbjct: 176 CPHIIVATPGRLNALVRDKVLDAKHVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQV 235

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT+  E++   + F+ NP  I V+  +               +  K        L 
Sbjct: 236 MMFSATLAKEIRATCKKFMANPLEIFVDDETKLTLHGLQQHYVKLEEAQKNR--KLNDLL 293

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF       + L   L    F   +IH  + Q  R+     FK    +++V
Sbjct: 294 DTLEFNQVVIFVKSVARAIELDKLLVSCNFPSISIHSGLQQEERINRYQAFKNFEKRILV 353

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+  RG+D+  V  V N+D P  A++Y+HR+GR GR G  G A T V+ + D + + A
Sbjct: 354 ATDIFGRGIDVERVNIVINYDAPPDADSYLHRVGRAGRFGTKGLAITFVSSDADQQVMAA 413

Query: 360 IEKLIEKKVDWLNGDLS 376
           I+   E  V  L   + 
Sbjct: 414 IQSRFEVAVPELPDFIE 430


>gi|213965889|ref|ZP_03394080.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
 gi|213951467|gb|EEB62858.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
          Length = 454

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 135/402 (33%), Positives = 216/402 (53%), Gaps = 3/402 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG++ ++  A+ D G  +   IQ  T+PL L   D+ G A+TG GKT  F +P++ 
Sbjct: 8   TFVELGVAAEICDALADEGITRTFAIQELTLPLALDGTDIIGQARTGMGKTLGFGVPLID 67

Query: 62  ILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +             R +I+ PTREL  QV ++  +   + NL V  + GG P+E Q ++
Sbjct: 68  RVFDDARIPEPDGTARAIIIVPTRELCVQVGEDLARAAHSTNLRVCTIYGGRPYEEQIEQ 127

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RG D+++ TPGR++D + R  L ++ ++ILV+DEAD MLD+GF+P I+ I + VP  R
Sbjct: 128 LDRGVDIIVGTPGRLIDLYQRNNLELSGVKILVLDEADEMLDLGFLPDIEKILAAVPDER 187

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATM   +  ++  F+  P  I   +    A   E      +  +      +   
Sbjct: 188 QTMLFSATMPGPILTLARTFMNRPVHIRAESGEEEATVHETTKQIVFQSHQMDKVSVIAR 247

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   +     IIF   K+   ++   L ++GF V A+HG++ Q +R + L+ F+ G + +
Sbjct: 248 ILQANGRGRTIIFARTKRGAASVAEQLGERGFLVTAVHGDMGQPARERSLTAFRNGDVDV 307

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI DV HV N  VP+    Y+HRIGRTGRAG  G A TLV  ++     
Sbjct: 308 LVATDVAARGIDIDDVTHVINHQVPDDEMTYVHRIGRTGRAGHSGVAVTLVGWDETTKWK 367

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           AI   ++  +  +    S+     E +D  +    +     P
Sbjct: 368 AISDALDLDMAEIPTWFSTSPELAEALDFPEGIDEKVGPARP 409


>gi|169853643|ref|XP_001833501.1| DEAD-box protein abstrakt [Coprinopsis cinerea okayama7#130]
 gi|116505540|gb|EAU88435.1| DEAD-box protein abstrakt [Coprinopsis cinerea okayama7#130]
          Length = 619

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 124/393 (31%), Positives = 197/393 (50%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ +   ++  +       PTPIQ++ IP      D+ GIA TG+GKT +F +P++ 
Sbjct: 185 SFRDMKIPDPILQYLKSKNIKNPTPIQLQGIPAAFSGRDIIGIAFTGSGKTLAFCMPLIM 244

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKY-------GKNYNLTVALLIGG 109
           +  +  A++       P  +IL P+RELA+Q  +N + +       GK   L   L IGG
Sbjct: 245 LALEEEAKLPFVQGEGPVGIILCPSRELASQTYENIQTWCTSLSQSGKYPQLNCLLCIGG 304

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +    Q++ L +G  +++ TPGR++D   + +   NN + L +DEADRM+D+GF   ++N
Sbjct: 305 VSMSEQSRVLNKGLHIVVATPGRLIDMLEKKRFTFNNCKYLCMDEADRMIDLGFEDDVRN 364

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I S     RQTLLFSATM  ++Q     F        +      A       +       
Sbjct: 365 IMSFFKRQRQTLLFSATMPKKIQD----FATESLIKPILVNVGRAGAANLDVLQVVEYVK 420

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           ++  ++  L   Q T    IIF   K  V ++   L  +G    AIHG+  Q  R   + 
Sbjct: 421 QEAKMVYLLECLQKTPPPVIIFSENKNEVDDIQEYLLLKGVEAVAIHGSKTQEERQYAIK 480

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G   +MVAS +A++GLD  D+ HV  F +P   E+Y+H+IGRTGR+G+ G A T V
Sbjct: 481 AFKSGAKDVMVASGVASKGLDFNDIQHVIIFSMPKEIEDYVHQIGRTGRSGKTGIATTFV 540

Query: 350 AKED-IKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
                 + +  ++ L+ +    +   L+S+  P
Sbjct: 541 NMNTPEQTLLDLKYLLIEAGQKVPPFLASIEDP 573


>gi|289742393|gb|ADD19944.1| eukaryotic initiation factor 4a [Glossina morsitans morsitans]
          Length = 403

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F + +L 
Sbjct: 31  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATFSIAILQ 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     +R  + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 91  QIDTS---IRDCQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARNLEA 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L  + I + V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 148 GCHVVVGTPGRVYDMINRKVLRTSRIRLFVLDEADEMLSRGFKDQIQDVFKMLPNDVQVI 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F++NP  I V     T E I+  ++    +  K   L       
Sbjct: 208 LLSATMPPDVLEVSRCFMRNPVSILVKKEELTLEGIKQFYINVKQENWKLGTLCDL--YD 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 266 TLSITQSVIFCNTRRKVDQLTEEMTTHNFTVSAMHGDMEQRDRELIMKQFRSGSSRVLIT 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  ED + +  IE
Sbjct: 326 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDEDRRILKDIE 385

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 386 QFYHTTIEEMPANIADL 402


>gi|242239282|ref|YP_002987463.1| ATP-dependent RNA helicase DbpA [Dickeya dadantii Ech703]
 gi|242131339|gb|ACS85641.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
          Length = 457

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 137/373 (36%), Positives = 208/373 (55%), Gaps = 9/373 (2%)

Query: 2   DFADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            FA+L  L  + +  +   GY+  TPIQ   +P +L   DV   A+TG+GKTA+F L +L
Sbjct: 3   SFAELNALPAEQLTTLNALGYLTMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             L+ GR   +    L+L PTRELA QVA+   +  +       L + G +PF  Q   L
Sbjct: 63  QHLDAGRFNTQS---LVLCPTRELADQVANELRRLARYMPNIKVLTLCGGVPFSIQRDSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +++ TPGR+LDH  +  + ++ ++ LV+DEADRMLDMGF   I  + + VP  RQ
Sbjct: 120 THAPHIIVATPGRLLDHLEKETVNLDALQTLVLDEADRMLDMGFADAIDAVIAHVPDQRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  D +  +S     +P  IE++T     + +       Y         L Q L
Sbjct: 180 TLLFSATWPDAIAAISHRIQHDPLVIEIDTV----DELPAVEQQFYEVSRSGKLDLLQKL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S++   + ++FCN KK+   +  +L     SV A+HG+++QR R + L  F  G+ +++
Sbjct: 236 LSREQPASCVVFCNTKKDCQAVYDALTASHQSVLALHGDMEQRDRDQTLVRFANGSSRVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V NF++    E +IHRIGRT RAG  G A +L A E+ +  +A
Sbjct: 296 VATDVAARGLDIKALEMVVNFELSWDPEVHIHRIGRTARAGESGLAISLCAPEEAQRANA 355

Query: 360 IEKLIEKKVDWLN 372
           +E+++  K+ W  
Sbjct: 356 LEEMLNLKLSWHP 368


>gi|156391217|ref|XP_001635665.1| predicted protein [Nematostella vectensis]
 gi|156222761|gb|EDO43602.1| predicted protein [Nematostella vectensis]
          Length = 777

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 142/435 (32%), Positives = 221/435 (50%), Gaps = 39/435 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  +   ++  V   GY  PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F +P+L 
Sbjct: 351 KWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFAIPLLV 410

Query: 62  ILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +       +     + P  LIL PTRELA Q+ +   K+G+   +    +IGG+  E Q
Sbjct: 411 WIMGLPKIERDNDADQGPYALILAPTRELAQQIEEEILKFGRPLGIRTVSVIGGLSREDQ 470

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-- 173
             +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF P +Q I     
Sbjct: 471 GFQLRLGVEIVIATPGRLIDVLENRYLVLNRCSYIVMDEADRMIDMGFEPEVQKILEHLP 530

Query: 174 ----------------------VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
                                     RQT++F+ATM  +++++++N+L+ P  + + +  
Sbjct: 531 VSNVKPDSEDSEDPEHLLTHMGKDKYRQTVMFTATMPPQVERLAKNYLRRPAVVYIGSVG 590

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
              E +E        Q  +K  L       +  +   IIF NQKK    L  SLEK GF 
Sbjct: 591 KPVERVEQRVYLVNEQQKRKKLLELLNKDLEPPI---IIFVNQKKGADVLAKSLEKMGFR 647

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
              +HG  +Q  R   LS+ K G+  ++VA+D+A RG+DI DV HV N+D+    E+Y H
Sbjct: 648 ATTLHGGRNQEQREFALSSLKGGSKDILVATDVAGRGIDIKDVSHVINYDMAKTIEDYTH 707

Query: 332 RIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
           RIGRTGRAG+ G A + + + D      +++L+      L+  +SS    L     AQH 
Sbjct: 708 RIGRTGRAGKTGIAVSFLTQSDSGVFYDLKQLL------LSSPVSSCPSELANHPEAQHK 761

Query: 392 HARKNNPIPQKSTGF 406
                    ++ T F
Sbjct: 762 PGTVLTKKRKEETIF 776


>gi|90020294|ref|YP_526121.1| ATP-dependent RNA helicase DbpA [Saccharophagus degradans 2-40]
 gi|89949894|gb|ABD79909.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 464

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 134/407 (32%), Positives = 219/407 (53%), Gaps = 10/407 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ +GL P ++  +   GY   TPIQ +++P ++   DV G  +TG+GKTA+F L +L  
Sbjct: 9   FSSIGLQPGLMQNLESLGYNTMTPIQAQSLPNIIAGKDVIGQGKTGSGKTAAFGLGLLNS 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    +    ++L+L PTRELA QVA    +  +  +    L +  G+PF  Q   LE 
Sbjct: 69  LDV---KRFYVQSLVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQIGSLEH 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ +H  +  L ++ + +LV+DEADRML+MGF   +  I   +P  RQTL
Sbjct: 126 GAHIVVGTPGRVEEHVRKNNLDLSKLSVLVLDEADRMLEMGFQAALDAIIETMPKQRQTL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  +E+Q ++   +  P   +V +   T +T              +  L  +LL  
Sbjct: 186 LFSATFPEEIQAIASRIMTAPVMTQVES---THDTSTIKQRFYKVDNDDQRLLAVRLLLL 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ ++FCN K+    +   L   GF+  A+HG+++QR R   L  F  G+  ++VA
Sbjct: 243 QHKPESAVVFCNTKRETQMVADDLAGHGFTALALHGDLEQRDRDLTLVRFANGSATVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N+ +    E ++HRIGRTGRAG  G A ++ ++++   +  +E
Sbjct: 303 TDVAARGLDIESLDAVINYHIARDMEVHVHRIGRTGRAGAKGIACSIYSEKEHFKLARLE 362

Query: 362 KLIEKKV--DWLNG-DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           + + ++V  D L    +     P  K+   Q +  +K    P    G
Sbjct: 363 ETMGQQVVNDKLPPTSVLDYPAPKPKMATLQIDGGKKQKVRPGDIVG 409


>gi|50292931|ref|XP_448898.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74664283|sp|Q8TFK8|DED1_CANGA RecName: Full=ATP-dependent RNA helicase DED1
 gi|20086311|gb|AAM08102.1| DED1p [Candida glabrata]
 gi|49528211|emb|CAG61868.1| unnamed protein product [Candida glabrata]
          Length = 617

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 132/424 (31%), Positives = 216/424 (50%), Gaps = 22/424 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    L   ++  +  A + KPTP+Q  ++P+V +  D+   AQTG+GKT  F+ P+L+
Sbjct: 146 EFTSPPLDSLLLENIKLARFTKPTPVQKYSVPIVSKGRDLMACAQTGSGKTGGFLFPVLS 205

Query: 62  ILE------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                              R   P  +++ PTRELA Q+ D  +K+     +   ++ GG
Sbjct: 206 ESFLTGPAEKAANDGYSYQRKAFPTAVVMAPTRELATQIFDEAKKFCYRSWVKPCVVYGG 265

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
            P   Q ++++ G D+L+ TPGR+ D   RGK+ ++N++ LV+DEADRMLDMGF P I++
Sbjct: 266 APIGNQMREMDHGCDLLVATPGRLNDLLERGKVSLSNVKYLVLDEADRMLDMGFEPQIRH 325

Query: 170 ITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I            QTL+FSAT   ++Q ++ +FL +   + V    ST+E I        
Sbjct: 326 IVEDCDMPPTGERQTLMFSATFPHDIQHLARDFLHDYIFLSVGRVGSTSENI---TQRIL 382

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
              ++        L +       +IF   K+    L   L  Q FS  AIHG+  Q  R 
Sbjct: 383 YVENRDKNSALLDLLAASNDNLTLIFVETKRMADQLTDFLIMQNFSATAIHGDRSQAERE 442

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L+ F+ G   ++VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A
Sbjct: 443 RALAAFRSGRANILVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGVA 502

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
                +++   +  + +++E+    +   L      L ++  ++    R        +T 
Sbjct: 503 TAFFNRDNNNIVKGLYEILEEANQEIPPFLEDC---LREVSFSRSGSNRSTRGNRSSNTR 559

Query: 406 FDRR 409
             R+
Sbjct: 560 DYRK 563


>gi|157876896|ref|XP_001686790.1| DEAD box RNA helicase [Leishmania major strain Friedlin]
 gi|68129865|emb|CAJ09171.1| putative DEAD box RNA helicase [Leishmania major strain Friedlin]
          Length = 573

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 122/374 (32%), Positives = 199/374 (53%), Gaps = 8/374 (2%)

Query: 10  PKVVCA-VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILEKGR 67
           P+ + A +L  G+  PTPIQ ++  +VL   D+ G+A+TG+GKT +F++P +  I  +  
Sbjct: 114 PQYLKAKLLAQGFTAPTPIQAQSWSIVLSGRDLVGVAKTGSGKTLAFIVPALAHIALQEP 173

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
            +V     +I+       AQ  +         ++    + GG P   Q   L +G  +L+
Sbjct: 174 LKVGDGPMVIVLAPTRELAQQIEQEAIKVLPQSIRCGCIYGGAPKGPQLGLLRQGVHILV 233

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR++D     ++ +  +  LV+DEADRMLDMGF P ++ I   +   RQTL+FSAT 
Sbjct: 234 ATPGRLIDFMEIKRVNLLRVTYLVMDEADRMLDMGFEPQVRAICGQIRPDRQTLMFSATW 293

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
             E+Q ++ +F +N  RI V +    A           ++ +K      + L  +   + 
Sbjct: 294 PREIQNLAASFQKNWVRINVGSMELLANKDVTQHFILTSEAAKLDE--LKRLIERHRNQR 351

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            +IFC  KK    L   L++ G    AIHG+ +QR R  IL  F++     +VA+D+AAR
Sbjct: 352 VLIFCKTKKTADYLEFQLKRNGVDCMAIHGDKEQRQREFILERFRKDPRLCVVATDVAAR 411

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH----IDAIEKL 363
           GLDI ++  V N+D P + ++Y+HRIGRTGRAG  G +FT++ K + +     +  + +L
Sbjct: 412 GLDIKELETVVNYDFPMQIDDYVHRIGRTGRAGAKGASFTMITKHETQLNASTVFQLVEL 471

Query: 364 IEKKVDWLNGDLSS 377
           +E+    + G L  
Sbjct: 472 VERAGQEVPGWLRE 485


>gi|38233802|ref|NP_939569.1| putative RNA helicase [Corynebacterium diphtheriae NCTC 13129]
 gi|38200063|emb|CAE49739.1| Putative RNA helicase [Corynebacterium diphtheriae]
          Length = 452

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 142/445 (31%), Positives = 221/445 (49%), Gaps = 9/445 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL   +V  +   G V P PIQ   IP  +   D+ G   TG+GKT +F LPM+ 
Sbjct: 3   SFLDLGLPSGIVQVLSRLGIVDPFPIQEAAIPDAISGRDILGRGPTGSGKTFTFGLPMIV 62

Query: 62  I-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              E G ++   PR LIL PTRELAAQV +  E+      L V  ++GG+  +     L 
Sbjct: 63  RLQESGVSKPSKPRGLILVPTRELAAQVRERLEEPASAMGLRVLEVVGGVSIKRHITSLA 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+L+ TPGR  D  N+GKL ++ +EI  +DEAD+M DMGF+P +  +  L P T Q 
Sbjct: 123 SPVDILVATPGRAQDLINQGKLSLSEVEISTLDEADQMADMGFLPQVTKLLELTPKTAQR 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+  ++ K+ + F+ +P         +T ET+ H       + ++   + +    
Sbjct: 183 LFFSATLDGDVNKLVDRFMSDPVTHSTTAVKATVETMSHYRFHVGDREARNSIVEK---- 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K  V      L + G +   +HG+    +R   L+ F +G++ ++V
Sbjct: 239 IAGRDGKTIMFMRTKHGVDRQVKKLRRIGINAAGLHGDKGHNTRAAALAGFADGSVPVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV  V + D P   + Y+HR GRT RAG  GK  TLV     + +D  
Sbjct: 299 ATDIAARGIDIDDVDLVVHVDPPAAHKAYVHRAGRTARAGTVGKVVTLVMDNQREEVD-- 356

Query: 361 EKLIEKK-VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
            KL+ K  V  +  D+ + +  L  I  A+  + +   P   +     R KK  ++ +++
Sbjct: 357 -KLLGKAGVSPVIVDVHADSAELTNITGARKRNGKALQPFGAQQKTSQRGKKQETTAQAN 415

Query: 420 IPLKESEKISKLQQDIQENDADSLG 444
            P +      + +Q   +    + G
Sbjct: 416 QPKRGKSSSFRTRQSKNKRPIATFG 440


>gi|322707196|gb|EFY98775.1| ATP-dependent RNA helicase DBP8 [Metarhizium anisopliae ARSEF 23]
          Length = 549

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 120/435 (27%), Positives = 203/435 (46%), Gaps = 21/435 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L + P +V ++ +    +PT IQ   IP +L+  D  G ++TG+GKT +F +P+L 
Sbjct: 119 SFSSLNVRPWLVQSLANMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQ 178

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +  + +      +L PTRELA Q+ + F+      +L   L+ GG    AQ   + +
Sbjct: 179 KWAEDPSAIFGV---VLTPTRELALQIYEQFKAISSPQSLKAILVTGGSDMRAQAIAMAQ 235

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILV--------IDEADRMLDMGFIPYIQNITSL 173
              V+I TPGR+ DH              V                    +P ++   S+
Sbjct: 236 RPHVIIATPGRLADHIRTSGEDTICGLRRVRFVVLDEADRLLHAAGPGSMLPDVEECLSV 295

Query: 174 VPFTRQTLL--FSATMTDELQ----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           +P   +     F+AT+T E++       +   Q     EV+T      T  H        
Sbjct: 296 LPPAAERQTLLFTATITPEVRALKSMPQKPGKQPVFVCEVDTQMLAIPTTLHQTHIQIPV 355

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             K+  L   LL   +  K  IIFCN+      L H L      V ++H  + QR R+  
Sbjct: 356 THKEHYLHVFLLTEANKDKTIIIFCNRTATADYLHHLLRLLDHRVTSLHSKLPQRQRIDN 415

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L+ F+    +++VA+D+AARGLDIP+V  V N+D+P   ++YIHR+GRT RAGR G++ T
Sbjct: 416 LARFRASAARILVATDVAARGLDIPEVSLVVNYDIPRDPDDYIHRVGRTARAGRTGESAT 475

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
            V + D++ + AIE  + +++D    +  +L   + + D  +    +K   + +   G +
Sbjct: 476 FVGQRDVELVLAIENRVGRQMDAWEEEGVNLETRVLR-DALKVVSEKKREALLEVEEGRE 534

Query: 408 ---RRKKNYSSQKSH 419
              +RK+     ++ 
Sbjct: 535 VGGKRKRAKMKLRAE 549


>gi|116205599|ref|XP_001228610.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|118572553|sp|Q2GMX1|HAS1_CHAGB RecName: Full=ATP-dependent RNA helicase HAS1
 gi|88176811|gb|EAQ84279.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 586

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 119/389 (30%), Positives = 199/389 (51%), Gaps = 7/389 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L LS K + ++ + G+ K T IQ + IP +L   DV G A+TG+GKT +F++P + +
Sbjct: 114 FSELNLSDKTMMSINEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 173

Query: 63  LEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   R + R    +I+  PTRELA Q+     +  KN++ T  ++IGG    A+  KL +
Sbjct: 174 LNSLRFKPRNGTGVIVVTPTRELALQIFGVARELMKNHSQTYGVVIGGANIRAEEDKLGK 233

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G ++LI TPGR+LDH  RG  +  N++ L+IDEADR+L++GF   +++I  ++P   +  
Sbjct: 234 GVNLLIATPGRLLDHLRRGSFVFKNLKSLIIDEADRILEVGFEDEMRHIVKILPKENRQT 293

Query: 182 L-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           + FSAT T +++ ++   L+               T+E          + K  LL     
Sbjct: 294 MLFSATQTTKVEDLARISLRPGPLYINVDEEKQFSTVEGLDQGYVIVDADKRFLLLFSFL 353

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   K  I+F +   +V      L+     V  +HG   Q+ R      F       ++
Sbjct: 354 KKMAKKKIIVFLSSCNSVKYYSELLQYIDLQVLDLHGKQKQQKRTNTFFEFCNAKQGTLI 413

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHIDA 359
            +D+AARGLDIP V  +  FD P+   +YIHR+GRT R     G++   +   ++  +  
Sbjct: 414 CTDVAARGLDIPQVDWIVQFDPPDDPRDYIHRVGRTARGNNTKGRSLLFLQPCELGFLAH 473

Query: 360 IEKLIEKKV---DWLNGDLSSLNPPLEKI 385
           + K  +  V   D+    + ++   LEK+
Sbjct: 474 L-KAAKVPVVEYDFPKNKILNVQSQLEKL 501


>gi|67484682|ref|XP_657561.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56474830|gb|EAL52186.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 450

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 109/379 (28%), Positives = 177/379 (46%), Gaps = 11/379 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+   ++  +   G +KPT IQ   IP +L  H+V G A+TG+GKTA+F LP++ 
Sbjct: 31  TFDGLGIKQFLLPTLKQFGIIKPTKIQQLCIPPLLSFHNVLGGAETGSGKTAAFALPIIH 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L            L+L PTRELA+Q+AD F+ +G   N+ V  ++GG+        L  
Sbjct: 91  HLST---DPYTGFALVLTPTRELASQIADQFKAFGACINIRVVQVVGGVDVIRILHHLSG 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEAD--RMLDMGFIPYIQNITSLVPFTRQ 179
              V+I TPG+++   +      ++ + L++DEAD       G +  +Q I S    T  
Sbjct: 148 SPHVIIATPGKLVSLIDHLPFSFDSAKFLILDEADRLFDPSTGMLDDVQKIRSKFSKTVT 207

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT    + ++    L + K +        ++  +  ++    +          + 
Sbjct: 208 TGLFSATTDSLIPQLPALGLTDTKILITGEKQKLSDNCDQTYIFIPNKVKHCYLTYLCIN 267

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        ++       +            S        +       L++F+     ++
Sbjct: 268 KQCIVFCGSVLRTEVIFRMFKSMELKATVLHSALPQIARENN------LNSFRSDEASIL 321

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLA+RGLDIPDV  V N+DVP+ AE+YIHR+GRT RA R G A TLV + +   I +
Sbjct: 322 VATDLASRGLDIPDVPLVINYDVPHTAEDYIHRVGRTARANRKGLAITLVDEYESDRIQS 381

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE  +  ++     D   +
Sbjct: 382 IESQLGIQLKEYKVDEEKV 400


>gi|259147982|emb|CAY81231.1| Drs1p [Saccharomyces cerevisiae EC1118]
          Length = 754

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 147/486 (30%), Positives = 237/486 (48%), Gaps = 30/486 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L LS  V+  +   GYVKP+PIQ  TIP+ L   D+   A TG+GKTA+F++P++ 
Sbjct: 234 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            L    A++   R ++L PTRELA QVAD  ++  +    +T  L +GG+    Q + L+
Sbjct: 294 RLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLK 353

Query: 121 RGADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D++I TPGR +DH        ++++EILV+DEADRML+ GF   +  I  L+P  RQ
Sbjct: 354 SRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQ 413

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSS--TAETIEHCFVATYAQYSKKCALLQQ 237
            LLFSATM  +++ +    L+ P RI ++ P    T  T E   +               
Sbjct: 414 NLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLI 473

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                   K  ++F  +K+    L   +   G SV  +HG++ Q  R+  ++ FK   + 
Sbjct: 474 RKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVP 533

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIK 355
           +++ +DLA+RGLDIP +  V N+D+P   E Y+HR+GRT RAGR G++ T V  + +D  
Sbjct: 534 VLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 593

Query: 356 HIDAIEKLIEK-----------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
            + A  K +E+                 +++  N  +  +N  +E I + +     K   
Sbjct: 594 IVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVEPMNDTIEDILVEE-----KEEK 648

Query: 399 IPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
              ++    R+ +N    K  I  +        Q +  + ++  LG           K R
Sbjct: 649 EILRAEMQLRKGENMLKHKKEIQARPRRTW--FQSESDKKNSKVLGALSRNKKVTNSKKR 706

Query: 459 GKLNDK 464
            +   K
Sbjct: 707 KREEAK 712


>gi|149704807|ref|XP_001495871.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 56
           [Equus caballus]
          Length = 546

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 122/493 (24%), Positives = 207/493 (41%), Gaps = 41/493 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F  +GL P+++ AV D G+ +PT IQ K IPL L+  D+   A+TG+GKTA++ +PM   
Sbjct: 9   FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQ 115
            L     G A  +  R L+L PT+ELA Q     ++        + +            +
Sbjct: 69  LLHRKATGPAVEQAVRGLVLVPTKELARQAQSMIQQLAAYCARDIRVANVSAAEDSASQR 128

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              +E+   V+      +         L +++E+LV+DEAD +   GF   ++++   +P
Sbjct: 129 AVLMEKPDVVVGTPSRILNHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q  L SAT  +++Q + E  L NP  +++             F         K  LL
Sbjct: 189 RIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPEQLQQFQVVCETEEDKFLLL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL+        ++F N  +    L   LE+     C ++G +  RSR  I+S F +G 
Sbjct: 249 YALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGF 308

Query: 296 IQL---------------------------MVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
                                                ARG+D   V  V NFD+P   E 
Sbjct: 309 YDCVIATDAEVLGAPVKGKRQGKGPKGDRASDPEAGVARGIDFHHVCAVLNFDLPPTPEA 368

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHR GRT RA   G   T V   +  H+  IE+L+    +     L      +E+I+  
Sbjct: 369 YIHRAGRTARANNPGIVLTFVLPTEQSHLGKIEELLGG--ESTAPVLLPYQFRMEEIEGF 426

Query: 389 QHNHARKNNPIPQKSTGFDR----RKKNYSSQKSHIPLKESEK-ISKLQQDIQENDADSL 443
           ++        + ++S    R    +++   S+K     +++ + +  L+ D+  + A   
Sbjct: 427 RYRCRDAMRSVTKQSIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVK 486

Query: 444 GFRGNMPAFMLPK 456
              G++P +++P 
Sbjct: 487 PHLGHVPDYLVPS 499


>gi|148978426|ref|ZP_01814920.1| putative ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3]
 gi|145962452|gb|EDK27731.1| putative ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3]
          Length = 428

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 138/390 (35%), Positives = 217/390 (55%), Gaps = 18/390 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+DLGL   ++  + +  Y +PTPIQ + IP VL   D+   A TG+GKTA+F LP+L 
Sbjct: 9   NFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQ 68

Query: 62  ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113
            + +         +      LIL PTRELA QVAD+ + Y  ++N  +    + GG+   
Sbjct: 69  QIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVN 128

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L  G D+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  I  L
Sbjct: 129 TQMQSLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKL 188

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  +QTLLFSAT  +++Q ++   L +P  +++ + +++        V    + +    
Sbjct: 189 LPSKKQTLLFSATFPEQVQTLTHELLTDPIEVQLQSANASTLVQRVFEVEKGRKTALLAH 248

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L+QQ        +  +IF N K +  +L   L K+G      HG+  Q SR +IL +FK 
Sbjct: 249 LIQQHEW-----RQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKS 303

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I +++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G A +L+  ED
Sbjct: 304 GEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHED 363

Query: 354 IKHIDAIEK-----LIEKKVDWLNGDLSSL 378
             H   IEK     L  ++++    D  ++
Sbjct: 364 YHHFKIIEKKNKIRLEREQIEGFEVDAEAV 393


>gi|297197315|ref|ZP_06914712.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
 gi|197714892|gb|EDY58926.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 469

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 133/450 (29%), Positives = 212/450 (47%), Gaps = 11/450 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L   V+  + + G  +P PIQ  T+P  L   DV G  +TG+GKT +F LP+L 
Sbjct: 27  SFADLALPAPVLRTLGEHGVREPFPIQAATLPDALAGRDVLGRGRTGSGKTLAFGLPLLV 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                RA  + P  LIL PTRELA QV++    Y +   L +A ++GG+    Q   L  
Sbjct: 87  RTAGQRAEAKQPLALILVPTRELAQQVSEALAPYAEALGLRMAAVVGGMSIGRQIAALRD 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+V++ TPGR+ D   R    +  + I V+DEAD+M D+GF+P +  +   V    Q +
Sbjct: 147 GAEVVVATPGRLHDLVERKACRLGRVRITVLDEADQMCDLGFLPQVTEVLDQVRPEGQRM 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ ++   +L +P    V+  +    T++H  +  +              + 
Sbjct: 207 LFSATLDRDVDQLVSRYLHDPVVHSVDPSAGAVTTMDHHVLVVHGPDR-----YAVTTEI 261

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F + K  V  L   L   G    A+H    Q  R + L+ FK G + ++VA
Sbjct: 262 AARDGRVLLFLDTKHGVDQLTRHLRGSGVHAAALHSGKSQPQRTRTLAQFKNGQVTVLVA 321

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +++AARGL + D+  V N D P  A++Y+HR GRT RAG  G+  TLV     +    + 
Sbjct: 322 TNVAARGLHVDDLDLVVNVDPPTDAKDYLHRAGRTARAGESGRVVTLVLSGQRRETSRL- 380

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ----KSTGFDRRKKNYSSQK 417
            + E  ++     + S    L +I  A+       +  P     K+T    R    S   
Sbjct: 381 -MAEAGIEPTVTKVRSGEAELSRITGAKAPSGTPLDGGPAVPRPKNTNAPFRGLGTSKDT 439

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRG 447
           +     +S K  + ++  +   A  +   G
Sbjct: 440 ARGTGGKSRKAGEARKLAEARRAAQVRRGG 469


>gi|195145352|ref|XP_002013660.1| GL24257 [Drosophila persimilis]
 gi|194102603|gb|EDW24646.1| GL24257 [Drosophila persimilis]
          Length = 703

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 103/378 (27%), Positives = 180/378 (47%), Gaps = 37/378 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           FA+    P ++  +   G+ KP+PIQ +  P++L+ HD+ GIAQTGTGKT +F+LP M+ 
Sbjct: 306 FAEY---PDLLGEIEKQGFPKPSPIQSQAWPILLKGHDMIGIAQTGTGKTLAFLLPGMIH 362

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +   R +     +L         +    E    ++    A+ + G            
Sbjct: 363 TEYQSIPRGQRGGANVLVLAPTRELALQIEMEVKKYSFRDMRAVCVYGGGCRRMQISDVE 422

Query: 122 G-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             A+++ICTPGR+ D      + +++I  LV+DEADRMLDMGF P I+ +   +   RQT
Sbjct: 423 RGAEIIICTPGRLNDLVQAKVIDVSSITYLVLDEADRMLDMGFEPQIRKVLMDIRPDRQT 482

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT    +++++++++ NP ++ V +    A       +      S+    L   + 
Sbjct: 483 IMTSATWPPGVRRLAQSYMNNPIQVCVGSLDLAATHSVKQVIELLEDESENDLTLDGFMT 542

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                                                   Q  R + +++ K G +++++
Sbjct: 543 QCIHGSRD--------------------------------QSDREQAIADIKSGVVRILI 570

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + + + + D      +
Sbjct: 571 ATDVASRGLDIEDISHVINYDFPRNIEEYVHRVGRTGRAGRTGTSISFITRSDWGMAQEL 630

Query: 361 EKLIEKKVDWLNGDLSSL 378
             ++E+    +   L S+
Sbjct: 631 INILEEADQVVPEQLHSM 648


>gi|168059571|ref|XP_001781775.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666777|gb|EDQ53423.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 432

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 94/376 (25%), Positives = 159/376 (42%), Gaps = 3/376 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V                   + F  Y  +  + V      I       K E  
Sbjct: 106 IEPVAGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKTHKDLLKNECP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L +    ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 166 HIVVGTPGRILGLARDKDLSLKSVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  I V+  +              ++  K        L   
Sbjct: 226 FSATLSKEIRPVCKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEVEKNR--KLNDLLDA 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L +  F    IH  + Q  R+     FKEG  +++VA+
Sbjct: 284 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           DL  RG+DI  V  V N+D+P+ A+ Y+HR+GR GR G  G A T VA   D   ++ ++
Sbjct: 344 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASAPDSNVLNQVQ 403

Query: 362 KLIEKKVDWLNGDLSS 377
           +  E  +  L   + +
Sbjct: 404 ERFEVDIKELPEQIDT 419


>gi|297806935|ref|XP_002871351.1| hypothetical protein ARALYDRAFT_487703 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317188|gb|EFH47610.1| hypothetical protein ARALYDRAFT_487703 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 794

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 129/476 (27%), Positives = 212/476 (44%), Gaps = 31/476 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F    LSP  + A+ DAG+   T +Q  T+P++LQ  DV   A+TGTGKT +F+LP    
Sbjct: 328 FDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEA 387

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF--EAQ 115
            + +       R      L++ PTRELA+Q A       K +      ++ G       Q
Sbjct: 388 VIKSPPASRDNRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQ 447

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIE---ILVIDEADRMLDMGFIPYIQNITS 172
            +       +L+ TPGR+ DH          +    +LV+DEAD +LDMGF   I+ I +
Sbjct: 448 RRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIA 507

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY----AQY 228
            VP  RQT LFSAT+ +E++++    L+            T ET +            ++
Sbjct: 508 AVPKQRQTFLFSATVPEEVRQICHVALKRDHEFINCVQEGTGETHQKVTQMYMIASLDRH 567

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
                +L +   + +     IIFC        +   L +   +V  IH    Q  R ++ 
Sbjct: 568 FSLLYVLLKEHIADNVDYKVIIFCTTAMVTRLVADLLSQLNLNVREIHSRKPQSYRTRVS 627

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             F++    ++V SD++ARG+D PDV  V    +P+  E YIHR+GRTGR G+ G+   L
Sbjct: 628 DEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLL 687

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           +A  +   + +++ L   K         S  PP++   + +         +  K   +  
Sbjct: 688 LAPWEEYFMSSVKDLPITK---------SPLPPIDPEAVKRVQKGLSQVEMKNKEAAYQA 738

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
               Y SQK  +  +++ ++ +L  +     + S+G     P  +     GK+  K
Sbjct: 739 WLGYYKSQK--MIARDTTRLVELANEF----SRSMGLGS--PPAIPKNVLGKMGLK 786


>gi|170088270|ref|XP_001875358.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650558|gb|EDR14799.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 691

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 131/429 (30%), Positives = 207/429 (48%), Gaps = 36/429 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  +   ++  +   GY  P+PIQ + IP+ L   D+ GIA+TG+GKTA+FV+PML+
Sbjct: 265 SWTESAIPQPILDCIEQIGYKDPSPIQRQAIPIGLLNRDIIGIAETGSGKTAAFVIPMLS 324

Query: 62  I-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                       R   P  LI+ PTRELA Q+     K+          ++GG+  E Q 
Sbjct: 325 FISGLPPFTDDIRHLGPYALIMAPTRELAQQIESEARKFASPLGFKCVSIVGGVSVEEQQ 384

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF------------- 163
             L  GA+++I TPGR+ D   R  L+++    +V+DEADRM+ +GF             
Sbjct: 385 FNLREGAEIIIATPGRLKDVIERHVLVLSQCRYVVMDEADRMVHLGFEADLTFILDALPS 444

Query: 164 -----------IPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS 212
                      +            TR T LFSATM   +++++  +L+ P  I +     
Sbjct: 445 ETMQGEDLGEQMDVDGETMIKKGRTRVTTLFSATMPAAVERLARKYLKKPAVITIGEAGR 504

Query: 213 TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             +T+E       +   KK   L ++L S       I+F NQKK    +   L + G++ 
Sbjct: 505 AVDTVEQRV-EFVSGDEKKKQKLLEILNSGQYASPIIVFVNQKKTADMVAKDLSRAGWNA 563

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
             +H   +Q  R   L + + G   ++VA+DLA RG+D+ DV  V NF + N  E Y+HR
Sbjct: 564 ATLHSGKNQEQREASLQSLRNGESDVLVATDLAGRGIDVQDVSLVINFQMANTIEAYVHR 623

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           IGRTGRAG+ G A T +  +D + +  +++ I K        +S +   L K + AQH  
Sbjct: 624 IGRTGRAGKLGTAITFLTNDDDEVMYDLKQEISK------SPVSKVPAELAKHEAAQHKV 677

Query: 393 ARKNNPIPQ 401
           +R+     +
Sbjct: 678 SREMKRKRE 686


>gi|194246516|ref|YP_002004155.1| Superfamily II DNA and RNA helicase [Candidatus Phytoplasma mali]
 gi|193806873|emb|CAP18302.1| Superfamily II DNA and RNA helicase [Candidatus Phytoplasma mali]
          Length = 531

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 217/371 (58%), Gaps = 9/371 (2%)

Query: 1   MD--FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           MD  F +  + P+   A+ +  ++KPT IQ   I  +++ +D+ G AQTGTGKT +F +P
Sbjct: 1   MDILFENFNILPQTQKALKELNFLKPTAIQNLVISEMIEGYDIIGQAQTGTGKTFAFGIP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEK-YGKNYNLTVALLIGGIPFEAQNK 117
           ++  ++     ++  ++LIL PTRELA QV   F+K       + +A++ GG  +  Q K
Sbjct: 61  IIEKIDLN---IKQTQSLILCPTRELALQVFQEFKKLIKFYVEIKIAVIYGGESYIKQFK 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE    ++I TPGR++D   R K+  + ++IL +DEAD ML+MGF   ++ I   +P  
Sbjct: 118 VLETKPHIIIATPGRVIDLLERKKIDFSGLKILTLDEADEMLNMGFQEALETILQKIPKK 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT+   +QK++  +  NPK ++V   +    +++      +         L  
Sbjct: 178 RQTVLFSATLPPTIQKIANKYQNNPKVLKVYQKNIAVSSVQQ---FYFLVKEFDKLKLLV 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L   +   + IIF N KK+V  +   L++  FSV  +HG++ Q  R ++++NF+   I+
Sbjct: 235 RLLDLENPNSVIIFANTKKDVDEINAYLQENNFSVDFLHGDLKQNQRQQVMNNFRNQKIK 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARG+DI  +  V N+D+  + E Y+HRIGRTGRAG  G A++ VA   +  +
Sbjct: 295 ILIATDVAARGIDISSITMVINYDLSRQNEIYVHRIGRTGRAGLKGLAYSFVAPSKLSQL 354

Query: 358 DAIEKLIEKKV 368
            ++E  +++K+
Sbjct: 355 KSLENYLKEKL 365


>gi|332026541|gb|EGI66659.1| Eukaryotic initiation factor 4A-II [Acromyrmex echinatior]
          Length = 423

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F + +L 
Sbjct: 51  NFDEMNLKEELLRGIYAYGFEKPSAIQQRAILPCIRGLDVIAQAQSGTGKTATFSISILQ 110

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G   +      IGG       +KL++
Sbjct: 111 QIDTSIKE---CQALILAPTRELAQQIQKVVIALGDFMHAECHACIGGTNVREDMRKLDQ 167

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  +R  L  ++I++ V+DEAD ML  GF   I ++  L+P   Q +
Sbjct: 168 GVHVVVGTPGRVYDMISRRALRASSIKLFVLDEADEMLSRGFKDQIHDVFKLLPNEVQVI 227

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++  VS+ F++NP RI V     T E I+  FV    +  K   L       
Sbjct: 228 LLSATMPSDVLDVSKCFMRNPIRILVKKEELTLEGIKQFFVYVEREDWKLETLCDL--YD 285

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L  S+ K+ F+V A+HG+++Q+ R  I+  F+ G+ ++++ 
Sbjct: 286 TLSITQAVIFCNTRRKVDWLTESMHKRDFTVSAMHGDMEQKERDLIMRQFRTGSSRVLIT 345

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V +ED + +  IE
Sbjct: 346 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTEEDKRTLKDIE 405

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     +D +  +++ L
Sbjct: 406 QFYNTHIDEMPMNVADL 422


>gi|322516110|ref|ZP_08069045.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           vestibularis ATCC 49124]
 gi|322125405|gb|EFX96755.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           vestibularis ATCC 49124]
          Length = 447

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 114/366 (31%), Positives = 180/366 (49%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ +  + +PTP+Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDFNFKAYIQKALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L      V++    I  P+RELA Q+    ++  K+    + ++      + Q +  +
Sbjct: 61  EKLNPKSGDVQVV---ITAPSRELATQIYQATKQIAKHSETEIRVVNYVGGTDKQRQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++     V+DEAD  +D GF+  +  I + +P  
Sbjct: 118 LKVAQPHIVIGTPGRIYDLVKSGDLAIHKAHTFVVDEADMTMDTGFLDTVDKIAASLPKE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEQIKTSTVIADTI---DNWLVSTKGRNKNEQIL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K+   +L   L   G  V  IHG I  R R +I++  K+   +
Sbjct: 235 EMLKGMQPYLAMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLEFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 RELEKM 360


>gi|269960877|ref|ZP_06175247.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
 gi|269834317|gb|EEZ88406.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
          Length = 459

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 139/368 (37%), Positives = 217/368 (58%), Gaps = 7/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL+P ++  +    Y   TPIQ  ++P +L + DV G  +TG+GKTA+F L +L+
Sbjct: 5   TFDQVGLTPALLETLESLNYTHMTPIQALSLPAILNQRDVIGQGKTGSGKTAAFGLGVLS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L   R RV+   +L+L PTRELA QVA      G++ +    L +  G+P   Q   LE
Sbjct: 65  NLNVKRFRVQ---SLVLCPTRELADQVAKEIRTLGRSIHNIKVLTLCGGMPMGPQIGSLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +L+ TPGRILDH  +G++ +  +  LV+DEADRMLDMGF   +  I    P  RQT
Sbjct: 122 HGAHILVGTPGRILDHLEKGRINLEELNTLVLDEADRMLDMGFQDALDAIIEAAPKQRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  ++++++++  +Q+P+ I+V +   T +T          + S+        L 
Sbjct: 182 LLFSATFPEKIEQIAQRIMQSPEMIKVES---THDTSSIAQYFYNVEGSEARDEALANLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ ++FCN KK V N+   L  +GFSV  +HG+++QR R + L  F   ++ ++V
Sbjct: 239 LTHQPESAVVFCNTKKEVQNVADELHHKGFSVIDLHGDLEQRERDQALVQFANKSVSILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+ ++  VFNF++    E ++HRIGRTGRAG  G AF+   ++D   +  I
Sbjct: 299 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARI 358

Query: 361 EKLIEKKV 368
           E+ ++  V
Sbjct: 359 EEYLDMDV 366


>gi|74006746|ref|XP_861599.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 13 [Canis familiaris]
          Length = 656

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 131/390 (33%), Positives = 210/390 (53%), Gaps = 15/390 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 62  ILE---------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            +          +   R + P +L+L PTRELA Q+ +   K+     +   ++ GG   
Sbjct: 241 QIYSDGPGEENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADI 300

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ---- 168
             Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I+    
Sbjct: 301 GQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 360

Query: 169 NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
             T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V      
Sbjct: 361 QDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESD 420

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR R + L
Sbjct: 421 KRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEAL 478

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G A + 
Sbjct: 479 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 538

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
             + +I     +  L+ +    +   L ++
Sbjct: 539 FNERNINITKDLLDLLVEAKQEVPSWLENM 568


>gi|269125451|ref|YP_003298821.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora
           curvata DSM 43183]
 gi|268310409|gb|ACY96783.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM
           43183]
          Length = 565

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 142/389 (36%), Positives = 216/389 (55%), Gaps = 4/389 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+  ++  A+   G V   PIQ   +P+ L+ +D+ G A+TGTGKT +F +P+L 
Sbjct: 27  TFRELGVCSEIADALESEGIVDAFPIQEMALPIGLRGYDIIGQARTGTGKTLAFGIPLLQ 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +E G    + PR L+L PTRELA+QV D+    G      V  + GG  +E Q + L  
Sbjct: 87  RIEHG---GKAPRGLVLAPTRELASQVTDDLLVAGGKLGTRVVAVYGGRAYEPQIQALRD 143

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR+LD   +G L ++ I++LV+DEADRMLD+GF+P I+ I  LVP  RQT+
Sbjct: 144 GVDVVVGTPGRLLDLARQGHLDLSQIQMLVLDEADRMLDLGFLPDIERIIELVPAERQTM 203

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E+  +S  +L            + +E         +  +      +   L  
Sbjct: 204 LFSATMPGEIVALSRRYLN-RPTNVRAEVHTESEATPQVTQHVFQTHPMDKPEVLARLLQ 262

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     ++FC  K+    +   L ++GF+  A+HG++ Q  R + L  F+ G + ++VA
Sbjct: 263 ANGRGLTMVFCQTKRACDRIAADLTRRGFAAAAVHGDLGQGQRERALRAFRSGKVDVLVA 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+ DV HV N++ P+ AE ++HRIGRTGRAGR G A TLV   D+     I 
Sbjct: 323 TDVAARGLDVEDVTHVINYECPDSAETHVHRIGRTGRAGREGTAVTLVDWSDLPRWKLIN 382

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
             ++          S+ +   E +DI + 
Sbjct: 383 NALQLPFGEPPETYSTSDHLYEALDIPRE 411


>gi|116618678|ref|YP_819049.1| superfamily II DNA/RNA helicase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097525|gb|ABJ62676.1| Superfamily II DNA and RNA helicase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 454

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 133/438 (30%), Positives = 212/438 (48%), Gaps = 18/438 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L  +V+ A+   G+ +PT +Q K IP VLQ  DV G +QTG+GKT +F++P+L 
Sbjct: 7   QFGQFNLKKEVIDALSAIGFYEPTAVQAKLIPDVLQGRDVVGQSQTGSGKTHTFLIPILN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNKK 118
            LE+    V+     I  P+RELAAQ+    +++    N  +++              + 
Sbjct: 67  QLEQDNEYVQAV---ITTPSRELAAQITKAMKEFSNQLNTDISISEFVGGTDKQRQIKQL 123

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 ++I TPGRI D    G L ++ +  LV+DEAD  LDMGF+  +  I   +P   
Sbjct: 124 ENHQPQIVIGTPGRIKDLVESGSLKLHAVHTLVVDEADMTLDMGFLNEVDYIAGAMPEGL 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSATM ++L+   + +L NP    +   +  A+TI        A  SK    +   
Sbjct: 184 QTLVFSATMPEKLKPFLKKYLDNPHFEAIPVSTVIADTI---DNWLLATKSKDKNDIIYQ 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +       ++F N K+    +   L   G  V  IHG+I+ R R +++   +    Q 
Sbjct: 241 VLTIGNPYLALVFANTKERAKEISSFLRGHGLKVAEIHGDIEPRERRRVMKAIQNLEYQY 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N D+P   E ++HR+GRTGR G  G A TL   ++   + 
Sbjct: 301 VVATDLAARGIDIEGVSHVINDDIPAELEFFVHRVGRTGRNGLPGLAITLYGPDEENEVA 360

Query: 359 AIEKL-IEKKVDWLNG----DLSSLNPPLEKIDIAQH----NHARKNNPIPQKSTGFDRR 409
            +E L I  K   + G    D+      ++++   +                   G+ RR
Sbjct: 361 ELEALGITFKAKQIKGNEIIDVKDRRARVQRVATTKKLDSTMVGMVKKKKKNVKPGYKRR 420

Query: 410 KKNYSSQKSHIPLKESEK 427
            KN   +K+ +  + S++
Sbjct: 421 IKNAIQRKNQMDRRISQR 438


>gi|328723045|ref|XP_003247743.1| PREDICTED: putative ATP-dependent RNA helicase me31b-like isoform 2
           [Acyrthosiphon pisum]
          Length = 422

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 98/375 (26%), Positives = 178/375 (47%), Gaps = 31/375 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF +  L  +++  + + G+ KP+PIQ  +IP+ L   D+   A+ GTGKT ++ +P+L 
Sbjct: 58  DFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDILARAKNGTGKTGAYSIPVLE 117

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    ++ + + L++ PTRELA Q +    +  K+ ++ V +  GG   +    ++ +
Sbjct: 118 QVDP---KLDVIQALVIVPTRELALQTSQICIELAKHLDIRVMVTTGGTNLKDDILRIYQ 174

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGRILD  ++    +++  ILV+DEAD++L   F   + +I S +P  RQ L
Sbjct: 175 RVHVIIATPGRILDLLDKSIAKVDHCRILVLDEADKLLSQDFKGMLDHIISRLPSERQIL 234

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    +++    F+    R           T++           K+       L S
Sbjct: 235 LYSATFPLTVKQ----FMDKHLRSPYEINLMEELTLKGVTQYYAFVQEKQKVHCLNTLFS 290

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   +   G+    IH  + Q  R ++  +F++G+ + +V 
Sbjct: 291 KLQINQSIIFCNSTQRVELLAKKITDLGYCCYYIHAKMAQAHRNRVFHDFRKGSCRNLVC 350

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
                                   +E Y+HRIGR+GR G  G A  L+  +D   +  IE
Sbjct: 351 ------------------------SETYLHRIGRSGRFGHLGIAINLITYDDRFALHRIE 386

Query: 362 KLIEKKVDWLNGDLS 376
           + +  ++  +   + 
Sbjct: 387 QELGTEIKPIPKVID 401


>gi|22330935|ref|NP_187583.2| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|75328099|sp|Q84TG1|RH57_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 57
 gi|29028778|gb|AAO64768.1| At3g09720 [Arabidopsis thaliana]
 gi|110742885|dbj|BAE99340.1| RNA helicase like protein [Arabidopsis thaliana]
 gi|332641282|gb|AEE74803.1| DEAD-box ATP-dependent RNA helicase 57 [Arabidopsis thaliana]
          Length = 541

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 111/420 (26%), Positives = 197/420 (46%), Gaps = 21/420 (5%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            FA+L    G    ++  + + G+ +PTPIQ + IP++L   +    A TG+GKT +F+ 
Sbjct: 138 SFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFIC 197

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           PML  L++        R +IL P RELAAQ A   +K  K  N  + L+    P      
Sbjct: 198 PMLIKLKRPSTDG--IRAVILSPARELAAQTAREGKKLIKGSNFHIRLMTK--PLVKTAD 253

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             +   DVLI TP R+       K+ ++ +E LV+DE+D++ +   +  I  +       
Sbjct: 254 FSKLWCDVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNP 313

Query: 178 RQTLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
                 FSAT+ D +++++ + + +  R+ +   ++ +ET++   V   ++  K  A   
Sbjct: 314 SIIRSLFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLA--L 371

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +   ++      +IF   K+    L   L+ +      IH ++    R   +  F+ G  
Sbjct: 372 RQSFAESLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEK 431

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+ ARG+D   +  V N+D P+ A  YIHRIGR+GRAGR G+A T   ++D+  
Sbjct: 432 WVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPF 491

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  I   +      +   + SL          +    RK+ P     +   +  KN + +
Sbjct: 492 LRNIANTMMSSGCEVPSWIMSL----------KKKKWRKHRPRRDSISTKPKADKNDTDE 541


>gi|46124853|ref|XP_386980.1| hypothetical protein FG06804.1 [Gibberella zeae PH-1]
 gi|91206556|sp|Q4I7K4|DED1_GIBZE RecName: Full=ATP-dependent RNA helicase DED1
          Length = 675

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 133/395 (33%), Positives = 202/395 (51%), Gaps = 21/395 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L   +   +  A Y  PTP+Q  +IP+V    D+   AQTG+GKT  F+ P+L+
Sbjct: 187 QFTTPPLDEHLCRNIELAHYKVPTPVQKYSIPIVSGGRDLMACAQTGSGKTGGFLFPILS 246

Query: 62  ILE--------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                             GR R   P +LIL PTREL +Q+ D   K+     +   ++ 
Sbjct: 247 QAFINGPSAVPANAAGQFGRQRKAYPTSLILAPTRELVSQIFDESRKFAYRSWVRPCVVY 306

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P I
Sbjct: 307 GGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQI 366

Query: 168 QNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I      
Sbjct: 367 RRIVEGEDMPQVQDRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVEY 426

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
                 +        +         +IF   K+   +L   L  Q F   +IHG+  QR 
Sbjct: 427 VEDVDKRSV---LLDILHSHANGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRE 483

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDIP V HV N+D+P   ++Y+HRIGRTGRAG  G
Sbjct: 484 RERALEFFRNGRCPILVATAVAARGLDIPHVTHVINYDLPTDVDDYVHRIGRTGRAGNTG 543

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            A     + +   +  +  L+++    +   L ++
Sbjct: 544 IATAFFNRGNRGIVRELMDLLKEANQEVPAFLETI 578


>gi|157125871|ref|XP_001654429.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108873494|gb|EAT37719.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 804

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 142/452 (31%), Positives = 230/452 (50%), Gaps = 13/452 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++ A+   GY+ PTPIQ  TIP+ L   D+CG A TGTGKTA+++LP L 
Sbjct: 182 SFYQMNLSRPLMKAIGVLGYIYPTPIQAATIPIALLGRDICGCAATGTGKTAAYMLPTLE 241

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L    +  +    + +L PTREL AQV    ++  +  ++ V + IGG+  +AQ   L 
Sbjct: 242 RLLYKPSAAQAVTRVLVLVPTRELGAQVYQVSKQLTQFTSIEVGIAIGGLDVKAQEAVLR 301

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              DV+I TPGR++DH         ++IE+L++DEADRMLD  F   ++ I      TRQ
Sbjct: 302 TNPDVVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIIQSCSKTRQ 361

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATMTD+++ ++   L  P ++ VN   + A  +   F+            L   L
Sbjct: 362 TMLFSATMTDQVKDLAAVSLTKPVKVFVNNNQTVAFNLRQEFIRIREGREADREPLLAAL 421

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +    + ++F   KK    L   L   G     +HG++ Q  R++ L  FK+  + ++
Sbjct: 422 ICRTFHDHCMVFVQTKKTAHRLRILLGLLGVKSGELHGDLTQSQRLESLKQFKDEQVDVL 481

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARGLDI  V  V NF +P   E+YIHR+GRT RAG+ G + +L  + + K +  
Sbjct: 482 IATDVAARGLDISGVKTVINFVMPITMEHYIHRVGRTARAGKAGVSVSLAGELERKIVKD 541

Query: 360 IEK---------LIEKKV-DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           I K         +I  ++ D     + +L   +EK+ + +    +      Q+    +R+
Sbjct: 542 IIKNAVSPVKNRIIPTEIVDKYRKKVLALEEEIEKV-LCEERAEKMLLQTEQQLNRTERK 600

Query: 410 KKNYSSQKSHIPLKESEKISKLQQDIQENDAD 441
            K   S  S    +   +  + ++ +   + D
Sbjct: 601 LKGVVSGPSREWFQTHHERKEEKERLSVKNGD 632


>gi|281204091|gb|EFA78287.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 837

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 122/449 (27%), Positives = 203/449 (45%), Gaps = 14/449 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-L 60
            F DL +S K + A+    + K T IQ   IP  L   DV G A+TG+GKT +F++PM  
Sbjct: 97  QFKDLPISAKSIQALEWGKFNKMTDIQRAAIPHALCGRDVLGAAKTGSGKTLAFIVPMLE 156

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +             +IL PTRELA Q+ +     GK ++ +  L+IGG     + KK+ 
Sbjct: 157 LLWRNNWTENDGVGAIILAPTRELAIQIFEVLRIAGKTHSFSAGLIIGGKDVAGEKKKIG 216

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++      +           +N+++L++DEADR+LDMGF   +  I S +P  RQT
Sbjct: 217 TMNILIATPGRLLQHMDETDGFQCSNLQMLILDEADRILDMGFSKSLNAIISNLPKARQT 276

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT T  ++ ++   L++P+ I V      +               KK   L     
Sbjct: 277 LLFSATQTKSIKDLARLSLKDPEYISVYDKDQVSTPKNLQQTICVTALDKKI-DLLYSFI 335

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK--ILSNFKEGTIQL 298
                   I+F +  K V  +    +           +   +   +  +  NF   +   
Sbjct: 336 KTHLTSKTIVFLSTCKQVRFMYEMFKLCNPGCRLFQLHGKMKQWTRLEVFQNFSHFSEGT 395

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+AARGLD P+V  V   D P   + YIHR+GRT R  + GK+FT++   + +   
Sbjct: 396 LFATDVAARGLDFPEVDWVVQMDCPEDIQTYIHRVGRTARYHQGGKSFTVLLPSEKEEFT 455

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
              KL++K+   +  D+   NP   ++   Q   A   +  P+        +K + S   
Sbjct: 456 ---KLMDKQ--KIKYDIMDANP--NQLVTIQAQLAGFLSEKPEHKY---LAQKAFVSYLK 505

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRG 447
            +  +E++ + KL++    + + S+G  G
Sbjct: 506 SLHRQENKNMFKLEELNLADFSKSMGLPG 534


>gi|307203141|gb|EFN82321.1| ATP-dependent RNA helicase p62 [Harpegnathos saltator]
          Length = 410

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 196/365 (53%), Gaps = 5/365 (1%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR--ARVRMP 73
           +   G+ +PT IQ +  P+ +  +++ GI QTG+GKT  ++LP +  +           P
Sbjct: 5   INKFGFQEPTAIQAQGWPIAMSGYNMVGIGQTGSGKTLGYILPAIVHINAQERLNHGDGP 64

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
             LIL PTRELA Q+      +G    +    + GG P   Q + L RG ++ I TPGR+
Sbjct: 65  IALILAPTRELAQQIQSVTTDFGSLSYVRSTCIFGGAPRGGQARDLRRGVEICIATPGRL 124

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193
           +D   +G   +     LV+DEADRMLDMGF P I+ I   +   RQ L++SAT   E++ 
Sbjct: 125 IDFLEQGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPKEVRT 184

Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL---QQLLQSQDTMKNGII 250
           +++ +L+N  ++ + + +  A       V    +Y K+  L    + +  + +     II
Sbjct: 185 LAKEYLKNYVQLNIGSLTLAANHDILQIVEVCEEYEKEAKLKTLLENIHDANEDSSKIII 244

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F   KK V ++  S+ + G+    IHG+  Q  R  +L  F+     ++VA+D+AARGLD
Sbjct: 245 FVETKKKVESITRSIRRFGWPAVCIHGDKSQHERDFVLREFRNKKSSILVATDVAARGLD 304

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           + DV +V NFD P+ +E+YIHRIGRTGR+G  G ++ L   ++ +    +  ++++    
Sbjct: 305 VDDVKYVINFDYPSSSEDYIHRIGRTGRSGNTGTSYALFTPQNARQARDLINVLKEAKQE 364

Query: 371 LNGDL 375
           +N  L
Sbjct: 365 VNPQL 369


>gi|242020630|ref|XP_002430755.1| ATP-dependent RNA helicase DDX19B, putative [Pediculus humanus
           corporis]
 gi|212515952|gb|EEB18017.1| ATP-dependent RNA helicase DDX19B, putative [Pediculus humanus
           corporis]
          Length = 480

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 96/391 (24%), Positives = 177/391 (45%), Gaps = 14/391 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH--DVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  +   G+  P+ IQ  T+P +L     ++   +Q+GTGKTA+F L M
Sbjct: 94  SFEELHLKPELLKGLYTMGFNTPSKIQETTLPSLLADPPINLIAQSQSGTGKTAAFTLAM 153

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++        P+ L L PT ELA Q      K G      +           +  KL
Sbjct: 154 LSRVDAT---KNYPQVLCLSPTYELAIQTGQVASKMGAFCPDILIRYAVRGEEVPRGTKL 210

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +             +   +      ++ +    +   G    +  I   +    Q
Sbjct: 211 KEHIIIGTPGKVLDWGLKYKFFDMSKIKVFVLDEADLMISTQGHQDQVLRIRKFLGEKCQ 270

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT   E+ + +E    NP  + +     + + I+  +V   ++  K  A++   +
Sbjct: 271 MMLFSATYEQEVVEFAEGIFLNPMILSLKREEESLDNIKQYYVMCNSEKDKYQAII--NI 328

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC  +K    L   + K G +V  + G +    R+ +L+ F++G  +++
Sbjct: 329 YGVVTIGQAMIFCQTRKTASWLAEHMSKDGHAVAMLSGELTVEQRIAVLNRFRDGKEKVL 388

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRA------ENYIHRIGRTGRAGRHGKAFTLVAKE- 352
           + +++ +RG+DI  V  V NFD+P         E Y+HRIGRTGR G+ G A  L+  + 
Sbjct: 389 ITTNVLSRGIDIEQVTIVVNFDLPRDPNGKPDYETYLHRIGRTGRFGKAGLAINLIQDQS 448

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
           D++ + +IE   +KK+  L+ + +     L+
Sbjct: 449 DMEVLKSIENHFQKKITLLDTEDADEIEKLQ 479


>gi|194856991|ref|XP_001968873.1| GG25110 [Drosophila erecta]
 gi|190660740|gb|EDV57932.1| GG25110 [Drosophila erecta]
          Length = 389

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 201/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F + +L 
Sbjct: 17  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATFSIAILQ 76

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 77  QIDTSIRE---CQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 134 GCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F++ P  I V     T E I+  +V    +  K   L       
Sbjct: 194 LLSATMPPDVLEVSRCFMREPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDL--YD 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 252 TLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  +D + +  IE
Sbjct: 312 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIE 371

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 372 QFYHTTIEEMPANIADL 388


>gi|269104240|ref|ZP_06156936.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268160880|gb|EEZ39377.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 431

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 135/378 (35%), Positives = 212/378 (56%), Gaps = 14/378 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F +L L   ++  V ++GY +PTPIQ + IP VL   DV   A TG GKTA+F LP+  
Sbjct: 9   SFTELALIQPLLARVTESGYQQPTPIQGQVIPNVLAGRDVIAGANTGAGKTAAFALPILQ 68

Query: 60  -----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPF 112
                    +    R      L+L PTRELA QVAD+   Y  ++N  +  A + GG+  
Sbjct: 69  ELYSQKQSDQTHGRRGNFVSALVLVPTRELARQVADSITSYSAHFNGAIKTAAVYGGVST 128

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
            AQ  +L  GAD+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   + N+ +
Sbjct: 129 NAQMLELRHGADILVATPGRLLDLVDHNAIKLDRVKTLVLDEADRMLSLGFTEELTNVLN 188

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +P  +QTLLFSAT  +++Q ++++ L NP  I++ +  ++        V    + +   
Sbjct: 189 QLPKQKQTLLFSATFPEQVQSLTQDLLNNPVEIQIQSDDASTIEQHVYTVNKGEKTAVLA 248

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L++Q        +  ++F   K +  +L   L K+G      HG+  Q SR +I+ +FK
Sbjct: 249 HLIKQNQW-----RQALVFVAAKNSCKHLAEKLHKRGIEAEVFHGDKAQSSRTRIIEDFK 303

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G I++++A+D+AARGLDI  +  V N D+P    +Y+HRIGR+GRAG  G A +L+  E
Sbjct: 304 SGKIEVLIATDIAARGLDIEKLPVVINVDLPRSPSDYMHRIGRSGRAGEAGLAISLIDYE 363

Query: 353 DIKHIDAIEKLIEKKVDW 370
           D  H   IEK  + +++ 
Sbjct: 364 DFHHFKVIEKKNKIRLER 381


>gi|255559765|ref|XP_002520902.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223540033|gb|EEF41611.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 535

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 186/368 (50%), Gaps = 11/368 (2%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           +F++L    G    ++  +++ G+ +PTPIQ + IP++L   +    A TG+GKT +FV 
Sbjct: 136 NFSELSSRYGCESYLLHNLVELGFKEPTPIQRQAIPVLLSGRECFACAPTGSGKTLAFVC 195

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           PML  L+         R +IL PTRELA+Q     +K  K     + L+           
Sbjct: 196 PMLMKLKHSSKDG--IRAVILCPTRELASQTTRECKKMAKGNKFRIKLMTKE--LVRTKD 251

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                 D+L+ TP R+     + K+ ++ +E LV+DE+D++ ++G +  I ++       
Sbjct: 252 LSRLPCDILVSTPLRLQLAIRKKKVDLSRVEYLVLDESDKLFELGLLKQIDSVFKACSNP 311

Query: 178 RQTLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
                 FSAT+ + +++++   + +  R+ V   ++ +ETI+   V T ++  K  A   
Sbjct: 312 SVIRSLFSATLPESVEELARTIMHDAVRVIVGRKNAASETIKQKLVFTGSEEGKLIA--L 369

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +   ++      +IF   K+    L   L+     V  IH ++ Q  R   + +F+ G  
Sbjct: 370 RQSFAESLNPPVLIFVQNKERANELYEELKFDSIRVGVIHSDLLQTQREIAVDDFRAGNS 429

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+ ARG+D   V  V N+D PN A  YIHRIGR+GRAGR G+A T   + D+  
Sbjct: 430 WVLIATDVVARGMDFKGVNCVINYDFPNSAAAYIHRIGRSGRAGRTGEAITFYTENDVPV 489

Query: 357 IDAIEKLI 364
           +  I  ++
Sbjct: 490 LRNIANVM 497


>gi|62897791|dbj|BAD96835.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19 variant [Homo sapiens]
          Length = 479

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL M
Sbjct: 93  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 152

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      + P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 153 LSQVEPAN---KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 209

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 210 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 269

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        L
Sbjct: 270 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 327

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 328 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 387

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 388 VTTNVCARGIDVEQVSVVTNFDLPVNKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 448 SMNILNRIQEHFNKKIERLDTD 469


>gi|50302969|ref|XP_451422.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74607669|sp|Q6CXB7|HAS1_KLULA RecName: Full=ATP-dependent RNA helicase HAS1
 gi|49640553|emb|CAH03010.1| KLLA0A09669p [Kluyveromyces lactis]
          Length = 497

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 112/391 (28%), Positives = 192/391 (49%), Gaps = 8/391 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL LS   + A+   G+ + T +Q +TIP +L   DV G A+TG+GKT +F++P + 
Sbjct: 35  SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94

Query: 62  ILEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   + + R    +I + PTRELA Q+     +  + ++ T  ++IGG     +  KL 
Sbjct: 95  MLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLM 154

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G ++LI TPGR +    N    +  N++ LVIDEADR+L++GF   ++ I  ++P   +
Sbjct: 155 KGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDR 214

Query: 180 TLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             + FSAT T +++ ++   L+               T +          S K  LL   
Sbjct: 215 QSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRFLLLFS 274

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +   +V      L      V  +HG   Q+ R      F      +
Sbjct: 275 FLKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGI 334

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHI 357
           +V +D+AARGLDIP V  +  FD P+   +YIHR+GRT R  +  GK+   +   ++  +
Sbjct: 335 LVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPTELGFL 394

Query: 358 DAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
             + K  +  ++        ++++   LEK+
Sbjct: 395 RYL-KAAKVPLNEYEFPTNKIANVQAQLEKL 424


>gi|254580331|ref|XP_002496151.1| ZYRO0C11660p [Zygosaccharomyces rouxii]
 gi|238939042|emb|CAR27218.1| ZYRO0C11660p [Zygosaccharomyces rouxii]
          Length = 435

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 124/429 (28%), Positives = 198/429 (46%), Gaps = 15/429 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+S  +V  +      +PT IQ   IP +L+  D  G A+TG+GKT +F  PMLT
Sbjct: 8   SFKILGVSKWLVETLNAMKISQPTTIQSACIPEILKGRDCIGGAKTGSGKTIAFGAPMLT 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +          ++L PTRELA Q+A+ F   G N N+ V++++GG     Q  +L+R
Sbjct: 68  KWSE---DPCGMFGVVLTPTRELAMQIAEQFTALGSNMNIRVSIIVGGEDIVKQGLELQR 124

Query: 122 GADVLICTPGRILDHFNRGKLLM----NNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
               +I TPGR+  H               + LV+DEAD +L   F   +      +P  
Sbjct: 125 KPHFIIATPGRLAHHILNSGDDTVGGLIRTKFLVLDEADSLLTGTFAKDLAICIGALPPK 184

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH----CFVATYAQYSKK 231
            +     F+AT+TD+++ +     +    +     +S  +               +Y K+
Sbjct: 185 NKRQTLLFTATVTDQVRALENAPSEGKPPLFTYEVASMDKVAIPSSLKTEYILVPEYVKE 244

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L Q L          ++F N+      L  +L   G  V ++H  + Q+ R   L  F
Sbjct: 245 AYLYQLLTCEDYKDSTAMVFVNRTMAAEILRRTLYAMGVRVTSLHSQMPQQERTNSLHRF 304

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           +    ++++A+D+A+RGLDIP V  V N+D+P+  + +IHR GRT RAGR G A + + +
Sbjct: 305 RANAARVLIATDVASRGLDIPTVQLVVNYDIPSDPDVFIHRSGRTARAGRRGDAISFITQ 364

Query: 352 EDIKHIDAIEKLIEKKVDWLNG--DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
            DI  I AIE+ I KK+   +   D + +   L  +  A+                  R+
Sbjct: 365 RDISRIQAIEERINKKMGECDKVHDTAVIRKSLNSVTKAKRESLMAMEKENFGEKKIQRK 424

Query: 410 KKNYSSQKS 418
           KKN    +S
Sbjct: 425 KKNQKGFRS 433


>gi|223674095|pdb|3G0H|A Chain A, Human Dead-Box Rna Helicase Ddx19, In Complex With An Atp-
           Analogue And Rna
          Length = 424

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL M
Sbjct: 42  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 101

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      + P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 102 LSQVEPAN---KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 158

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 159 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 218

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        L
Sbjct: 219 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 276

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 277 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 336

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 337 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 396

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 397 SMNILNRIQEHFNKKIERLDTD 418


>gi|223674049|pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
           Rna
 gi|223674050|pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
           Rna
          Length = 412

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL M
Sbjct: 26  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 85

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      + P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 86  LSQVEPAN---KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 142

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 143 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 202

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        L
Sbjct: 203 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 260

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 261 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 320

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 321 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 381 SMNILNRIQEHFNKKIERLDTD 402


>gi|211939444|pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
 gi|211939445|pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
          Length = 445

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL M
Sbjct: 63  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 122

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      + P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 123 LSQVEPAN---KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 179

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 180 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 239

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        L
Sbjct: 240 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 297

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 298 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 357

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 358 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 417

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 418 SMNILNRIQEHFNKKIERLDTD 439


>gi|119572221|gb|EAW51836.1| hCG1998531, isoform CRA_g [Homo sapiens]
          Length = 484

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL M
Sbjct: 98  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 157

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      + P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 158 LSQVEPAN---KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 214

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 215 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 274

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        L
Sbjct: 275 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 332

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 333 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 392

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 393 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 452

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 453 SMNILNRIQEHFNKKIERLDTD 474


>gi|114663437|ref|XP_001169835.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 9 [Pan
           troglodytes]
 gi|119572220|gb|EAW51835.1| hCG1998531, isoform CRA_f [Homo sapiens]
          Length = 466

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL M
Sbjct: 80  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 139

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      + P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 140 LSQVEPAN---KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 196

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 197 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 256

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        L
Sbjct: 257 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 314

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 315 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 374

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 375 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 434

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 435 SMNILNRIQEHFNKKIERLDTD 456


>gi|114663439|ref|XP_001169952.1| PREDICTED: hypothetical protein isoform 14 [Pan troglodytes]
          Length = 484

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL M
Sbjct: 98  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 157

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      + P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 158 LSQVEPAN---KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 214

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 215 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 274

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        L
Sbjct: 275 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 332

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 333 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 392

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 393 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 452

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 453 SMNILNRIQEHFNKKIERLDTD 474


>gi|114663452|ref|XP_001169793.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 7 [Pan
           troglodytes]
 gi|119572215|gb|EAW51830.1| hCG1998531, isoform CRA_a [Homo sapiens]
          Length = 461

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL M
Sbjct: 75  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 134

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      + P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 135 LSQVEPAN---KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 191

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 192 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 251

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        L
Sbjct: 252 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 309

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 310 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 369

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 370 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 429

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 430 SMNILNRIQEHFNKKIERLDTD 451


>gi|84569979|gb|AAI10806.1| DDX19B protein [Homo sapiens]
          Length = 449

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL M
Sbjct: 63  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 122

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      + P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 123 LSQVEPAN---KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 179

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 180 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 239

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        L
Sbjct: 240 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 297

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 298 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 357

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 358 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 417

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 418 SMNILNRIQEHFNKKIERLDTD 439


>gi|6005743|ref|NP_009173.1| ATP-dependent RNA helicase DDX19B isoform 1 [Homo sapiens]
 gi|55644171|ref|XP_511078.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 23 [Pan
           troglodytes]
 gi|114663444|ref|XP_001170208.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 18 [Pan
           troglodytes]
 gi|114663446|ref|XP_001170248.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 19 [Pan
           troglodytes]
 gi|114663448|ref|XP_001170270.1| PREDICTED: ATP-dependent RNA helicase DDX19B isoform 20 [Pan
           troglodytes]
 gi|10719979|sp|Q9UMR2|DD19B_HUMAN RecName: Full=ATP-dependent RNA helicase DDX19B; AltName: Full=DEAD
           box RNA helicase DEAD5; AltName: Full=DEAD box protein
           19B
 gi|237823851|pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
           With The Dead-Box Helicase Ddx19
 gi|237823853|pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
           With The Dead-Box Helicase Ddx19
 gi|5701850|emb|CAB52189.1| DEAD Box Protein 5 [Homo sapiens]
 gi|13177688|gb|AAH03626.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19B [Homo sapiens]
 gi|119572212|gb|EAW51827.1| hCG2043426, isoform CRA_a [Homo sapiens]
 gi|119572216|gb|EAW51831.1| hCG1998531, isoform CRA_b [Homo sapiens]
 gi|193786528|dbj|BAG51311.1| unnamed protein product [Homo sapiens]
 gi|261857900|dbj|BAI45472.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19B [synthetic construct]
 gi|312152434|gb|ADQ32729.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19B [synthetic construct]
          Length = 479

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL M
Sbjct: 93  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 152

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      + P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 153 LSQVEPAN---KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 209

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 210 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 269

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        L
Sbjct: 270 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 327

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 328 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 387

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 388 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 448 SMNILNRIQEHFNKKIERLDTD 469


>gi|47226775|emb|CAG06617.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 558

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 100/388 (25%), Positives = 164/388 (42%), Gaps = 13/388 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +  ++  +GY KPTP+Q   IP++    D+   AQTG+GKTA+F+LP+L
Sbjct: 169 VTFDEAELCESLRKSISKSGYTKPTPVQKHGIPIIFAGRDLMACAQTGSGKTAAFLLPIL 228

Query: 61  TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L          + ++ P  +I+ PTREL +Q+     K+                   
Sbjct: 229 QKLIADGVAASSFSELQEPEAIIVAPTRELISQIFLEARKFAFGXXXXXXXXXXXXXXXX 288

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----I 170
                                                          GF P ++      
Sbjct: 289 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFEPDMRRLVGSP 348

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  +++Q+++ +FL+             A T         +++SK
Sbjct: 349 GMPSKENRQTLMFSATFPEDIQRLARDFLRVDYIFLTVGIVGGACTDVEQSFIEMSKFSK 408

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +       +     M+  ++F   K+    +   L ++     +IHG+ +QR R   L+N
Sbjct: 409 RE--QLLDIVRATGMERTMVFVETKRQADFIAAHLCQENVPTTSIHGDREQREREMALAN 466

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDIPDV HV NFD+PN  + Y+HRIGRTGR G  G+A +   
Sbjct: 467 FRSGKCPVLVATSVAARGLDIPDVQHVINFDLPNNIDEYVHRIGRTGRCGNVGRAVSFYD 526

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSS 377
              D     ++  ++ K    +   L  
Sbjct: 527 PGTDGALASSLVAILAKAQQEVPSWLEE 554


>gi|195116347|ref|XP_002002717.1| GI17537 [Drosophila mojavensis]
 gi|193913292|gb|EDW12159.1| GI17537 [Drosophila mojavensis]
          Length = 389

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 201/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F + +L 
Sbjct: 17  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATFSIAILQ 76

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 77  QIDTSIRE---CQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 134 GCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F++ P  I V     T E I+  +V    +  K   L       
Sbjct: 194 LLSATMPPDVLEVSRCFMREPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDL--YD 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 252 TLSITQSVIFCNTRRKVDQLTQEMTSHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  +D + +  IE
Sbjct: 312 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIE 371

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 372 QFYHTTIEEMPANIADL 388


>gi|256374971|ref|YP_003098631.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
 gi|255919274|gb|ACU34785.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
          Length = 609

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 134/364 (36%), Positives = 204/364 (56%), Gaps = 3/364 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+  ++V A+ +AG  +   IQ  T+PL L   DV G A+TGTGKT  F +P+L 
Sbjct: 53  TFTELGVREEIVRALGEAGIERAFAIQELTLPLALAGEDVIGQARTGTGKTLGFGIPLLQ 112

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +         P+ L++ PTREL  QV  +     K+ ++ V  + GG P+E Q   L +
Sbjct: 113 RVITPGDGT--PQALVVVPTRELCLQVTHDLTDASKHMDVRVLAIYGGRPYEPQIAALRK 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DV++ TPGR+LD   +  L++  +  LV+DEAD MLD+GF+P I+ +  +VP  RQT+
Sbjct: 171 GVDVVVGTPGRLLDLAEQRHLVLGKVRSLVLDEADEMLDLGFLPDIERVLRMVPDERQTM 230

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +  ++  FL  P  +      + A           A    K  LL ++LQ+
Sbjct: 231 LFSATMPGPIITLARTFLNQPTHVRAEENDAGAVHERTEQFIYRAHALDKVELLARVLQA 290

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +D   + I     K+    +   + ++GF+V A+HG++ Q +R + L  F+ G I ++VA
Sbjct: 291 RDRGLSMIFT-RTKRTAQKVADDMAERGFAVAAVHGDLGQGAREQALRAFRSGKIDVLVA 349

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAGR G A TLV  ++I     I 
Sbjct: 350 TDVAARGIDVEGVTHVVNYQCPEDEKTYVHRIGRTGRAGRTGVAVTLVDWDEIPRWQMIS 409

Query: 362 KLIE 365
             + 
Sbjct: 410 DALN 413


>gi|227894658|ref|ZP_04012463.1| ATP-dependent RNA helicase [Lactobacillus ultunensis DSM 16047]
 gi|227863553|gb|EEJ70974.1| ATP-dependent RNA helicase [Lactobacillus ultunensis DSM 16047]
          Length = 453

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 134/440 (30%), Positives = 206/440 (46%), Gaps = 13/440 (2%)

Query: 1   MD--FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           M+  F D  + P +   +    + KPT +Q K IP +L    V   A TG+GKT ++++P
Sbjct: 1   MNNIFEDSRIKPAIQEGLKKIHFNKPTKVQEKVIPAMLSDLSVIVQAATGSGKTHAYLVP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +   +E+    V+   TL      +   QVA         +     L  G        K 
Sbjct: 61  IFNEIEEDAHYVQAIITLPSRELADQLYQVARELRNASGMHFSIAHLAGGTDRERQLEKY 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             R   ++I TPGR+LD   +    ++ I+  VIDEAD  LDMGF+  I  + + +P   
Sbjct: 121 ENRTPQLVIATPGRLLDFVQKKVFAVDQIKTFVIDEADMTLDMGFLSDIDQVAAKMPKEV 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q   FSAT+  +L      ++ +P  I ++ P+  A TI           SK    +   
Sbjct: 181 QIAAFSATIPVKLANFLRKYMAHPDEIVIDNPAVIAPTI---KNDLLDIGSKNRKSVLYK 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +       ++F N K+ V  L   L+ QG  V  IHG + +R R + L   ++G  Q 
Sbjct: 238 LLTMGQPYLALVFANTKQTVDELTRYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQFQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARGLDI  V  V N+++P   E  IHRIGRTGR G  G A TL+ +E++  I+
Sbjct: 298 VVASDLAARGLDIDGVSLVINYEIPRDIEFVIHRIGRTGRNGLSGHAITLIREEEMNRIE 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF-----DRRKKNY 413
            +EK +    D++      L P   K   ++ N   KN  +  K  G+      +RK  Y
Sbjct: 358 DLEK-MGVHFDFVEVKNGELVP--RKHYRSRENRQGKNRKLDTKLVGYVKKEKRKRKPGY 414

Query: 414 SSQKSHIPLKESEKISKLQQ 433
             +      +++ +  KL+Q
Sbjct: 415 KKKIKRAIQEDNRQKRKLEQ 434


>gi|224124820|ref|XP_002319430.1| predicted protein [Populus trichocarpa]
 gi|222857806|gb|EEE95353.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 126/372 (33%), Positives = 197/372 (52%), Gaps = 9/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +    Y +PT IQ + + + L   D+ G A+TG+GKTA+F +PM+ 
Sbjct: 116 SFEDMCLHQSIMKDIAHHEYTRPTSIQAQAMTVALSGRDLLGCAETGSGKTAAFTIPMIQ 175

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
               +    R   P  L+L PTRELA Q+    + + ++      A+++GG     Q  +
Sbjct: 176 HCLAQPTVRRGDGPLALVLAPTRELAQQIEKEVKGFSRSLESFRTAIVVGGTNIADQRLE 235

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G DV++ TPGR++DH  +G   ++ I  +V+DEADRMLDMGF P I+ +   +P   
Sbjct: 236 LRAGVDVIVATPGRLIDHLQQGNTSLSRISFIVLDEADRMLDMGFEPQIREVMRNLPEKH 295

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC------ 232
           QTLLFSATM  E++ +++ +L +P ++ V   SS    +              C      
Sbjct: 296 QTLLFSATMPVEIETLTQEYLTSPVQVRVGKVSSPTANVSQILTKVSESEKIDCLLALLV 355

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
               Q  +S       I+F  +K     +  +L  Q     A+HG   Q  R   L +F+
Sbjct: 356 EDASQAERSNQPFPLTIVFVERKTRCNEVAEALVAQALQAVALHGGRSQSDREAALRDFR 415

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G+  ++VA+D+A+RGLD+  V HV N D+P   E+Y+HRIGRTGRAG  G+A +    +
Sbjct: 416 SGSTSILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTDQ 475

Query: 353 DIKHIDAIEKLI 364
           D+  +  I+K I
Sbjct: 476 DLFLVAQIKKAI 487


>gi|157073998|ref|NP_001096708.1| probable ATP-dependent RNA helicase DDX52 [Bos taurus]
 gi|160380636|sp|A5D7C1|DDX52_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX52; AltName:
           Full=DEAD box protein 52
 gi|146186791|gb|AAI40502.1| DDX52 protein [Bos taurus]
 gi|296477012|gb|DAA19127.1| probable ATP-dependent RNA helicase DDX52 [Bos taurus]
          Length = 596

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 110/434 (25%), Positives = 207/434 (47%), Gaps = 29/434 (6%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     ++ +++  +LDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 160 TFQQLDQEYKINSRLLQNILDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 219

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L++   +      LI+ PTRELA+Q+     K  +        +    +  +   
Sbjct: 220 PILMHLKQPTNKGFR--ALIISPTRELASQIHRELVKLSEGTGFRIHMIHKAAVAAKKFG 277

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++    +    ++  ++E LV+DE+D++ + G   +        
Sbjct: 278 PKSSKKFDILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIF 337

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT   ++++     L +   + V   +S  ET+E   +   ++  K
Sbjct: 338 LACTSHKVKRAMFSATFAYDVEQWCRLNLDSVITVSVGARNSAVETVEQELLFVGSETGK 397

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +  +     ++F    +    L H L  +G +V  IH +  Q+ R   + +
Sbjct: 398 LLAMRELVKKGFNPP--VLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHS 455

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   
Sbjct: 456 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFT 515

Query: 351 KEDIKHIDAIEKLIEKK----VDWLNG--------DLSSLNPPLEKIDIAQ--HNHARKN 396
           ++D   + ++  +I++      +++ G            +  PLE+  I+        K 
Sbjct: 516 EDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPKYFLEKA 575

Query: 397 NPIPQKSTGFDRRK 410
               +K TG +++K
Sbjct: 576 KDKRKKVTGQNKKK 589


>gi|74006744|ref|XP_861568.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 12 [Canis familiaris]
          Length = 653

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 130/387 (33%), Positives = 208/387 (53%), Gaps = 12/387 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 62  ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +             + P +L+L PTRELA Q+ +   K+     +   ++ GG     Q
Sbjct: 241 QIYSDGPGEALRAMKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQ 300

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NIT 171
            + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I+      T
Sbjct: 301 IRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT 360

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 R T++FSAT   E+Q ++ +FL     + V    ST+E I    V       + 
Sbjct: 361 MPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRS 420

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR R + L  F
Sbjct: 421 FLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 478

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G A +   +
Sbjct: 479 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE 538

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            +I     +  L+ +    +   L ++
Sbjct: 539 RNINITKDLLDLLVEAKQEVPSWLENM 565


>gi|15898685|ref|NP_343290.1| ATP-dependent RNA helicase [Sulfolobus solfataricus P2]
 gi|284175881|ref|ZP_06389850.1| ATP-dependent RNA helicase [Sulfolobus solfataricus 98/2]
 gi|13815150|gb|AAK42080.1| ATP-dependent RNA helicase [Sulfolobus solfataricus P2]
 gi|261603175|gb|ACX92778.1| DEAD/DEAH box helicase domain protein [Sulfolobus solfataricus
           98/2]
          Length = 343

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 125/362 (34%), Positives = 197/362 (54%), Gaps = 22/362 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    LS  +  A+ +AGY+KPT +Q   IP +L    V   A+TG+GKTA++V+P+L  
Sbjct: 2   FE--NLSEDLRKALSEAGYIKPTKVQEVVIPELLNGKSVIAQAKTGSGKTAAYVIPILER 59

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                         IL PTRELA Q+ D   K GK   + V+L+IGG+ ++ Q +     
Sbjct: 60  NSTAL---------ILSPTRELATQILDEIRKLGKYKQIDVSLIIGGMSYDGQRQSR--- 107

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LD +++GK+  +  +++++DEADRMLDMGFI  I+ I +     + T  
Sbjct: 108 --IVVGTPGRLLDLWSKGKIDFSGYDVIIVDEADRMLDMGFIDDIRMILN-HSNAKITGF 164

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ DE+  +++ F ++ + I ++      E  +           K   LL++     
Sbjct: 165 FSATIPDEIMTLAKEFSKDLREIVLDEYKPVEEVKQIFVKVRNDWSDKVSKLLEE----- 219

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  ++F   +     L   L  +G +V  + G++ Q  R+K    FK+G   ++VA+
Sbjct: 220 ISGEKILVFARTRDRARKLYFLLRGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVAT 279

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLA+RG+DI DV  V NFD+P   E YIHR+GRTGR GR G+A T     +   I  I  
Sbjct: 280 DLASRGIDIVDVDKVINFDIPRDVETYIHRVGRTGRMGRVGQAVTFYTFREADMIKRINN 339

Query: 363 LI 364
           L+
Sbjct: 340 LL 341


>gi|322799953|gb|EFZ21079.1| hypothetical protein SINV_07394 [Solenopsis invicta]
          Length = 423

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F + +L 
Sbjct: 51  NFDEMNLKEELLRGIYAYGFEKPSAIQQRAILPCIRGLDVIAQAQSGTGKTATFSISILQ 110

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G   +      IGG       +KL++
Sbjct: 111 QIDTTIKE---CQALILAPTRELAQQIQKVVIALGDFMHAECHACIGGTNVREDMRKLDQ 167

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  +R  L  ++I++ V+DEAD ML  GF   I ++  L+P   Q +
Sbjct: 168 GVHVVVGTPGRVYDMISRRALRASSIKLFVLDEADEMLSRGFKDQIHDVFKLLPNEVQVI 227

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++  VS+ F++NP RI V     T E I+  FV    +  K   L       
Sbjct: 228 LLSATMPSDVLDVSKCFMRNPIRILVKKEELTLEGIKQFFVYVEREDWKLETLCDL--YD 285

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L  S+ K+ F+V A+HG+++Q+ R  I+  F+ G+ ++++ 
Sbjct: 286 TLSITQAVIFCNTRRKVDWLTESMHKRDFTVSAMHGDMEQKERDLIMRQFRTGSSRVLIT 345

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V +ED + +  IE
Sbjct: 346 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTEEDKRTLKDIE 405

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     +D +  +++ L
Sbjct: 406 QFYNTHIDEMPMNVADL 422


>gi|255947238|ref|XP_002564386.1| Pc22g03430 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591403|emb|CAP97631.1| Pc22g03430 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 602

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 118/408 (28%), Positives = 201/408 (49%), Gaps = 7/408 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS K +  + D G+   T IQ +T+P +L   DV G A+TG+GKT +F+LP + 
Sbjct: 120 KFTELNLSEKTMQGINDMGFTTMTEIQQRTVPPLLAGRDVLGAAKTGSGKTLAFLLPAIE 179

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + R    + ++ PTRELA Q+     +   +++ T  ++IGG    A+ +KL 
Sbjct: 180 MLHALRFKPRNGTGVLVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAEKLM 239

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-VPFTR 178
           +G ++L+ TPGR +    N    +  N++ LVIDEADR+L++GF   I+ I  +     R
Sbjct: 240 KGVNLLVATPGRLLDHLQNTQGFVFKNLKTLVIDEADRILEVGFEDEIRQIVKILPSEER 299

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT T +++ ++   L+          S    T+           + K  LL   
Sbjct: 300 QTMLFSATQTTKVEDLARISLRPGPLYINVDHSKEHSTVAGLEQGYVVCEADKRFLLLFS 359

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +    V      L      V  +HG   Q+ R      F       
Sbjct: 360 FLKRNLKKKIIVFFSSCSCVKYHAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAKQGT 419

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R     G++   +   ++  +
Sbjct: 420 LICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGKEGKGRSLMFLQPSEVGFL 479

Query: 358 DAIE--KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
             ++  ++   + ++    + ++   LEK+ I Q+ +  K+     +S
Sbjct: 480 KHLKDARVPVVEFEFPASKIVNVQSQLEKL-IGQNYYLNKSAKDGYRS 526


>gi|67971948|dbj|BAE02316.1| unnamed protein product [Macaca fascicularis]
          Length = 484

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL M
Sbjct: 98  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 157

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      + P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 158 LSQVESAN---KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 214

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 215 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 274

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        L
Sbjct: 275 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 332

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 333 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 392

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 393 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 452

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 453 SMNILNRIQEHFNKKIERLDTD 474


>gi|170694034|ref|ZP_02885190.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170141106|gb|EDT09278.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 467

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 140/405 (34%), Positives = 204/405 (50%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L    +  +   GYV+ TPIQ  ++P+ L  HD+   A+TG+GKTA+F L +L  
Sbjct: 11  FSQLPLPAATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 70

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + ++L PTRELA QV     +  +       L +  G P   Q   LE 
Sbjct: 71  LDT---RNFAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  RG L + ++  LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 128 GAHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVRQCPKERQTL 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K+S+ F     R       +            Y     +      LL +
Sbjct: 188 LFSATYPEGIVKLSQQF----LRNPKEVKLAERHDNTKIRQRFYEVTEDERLHAVGLLLN 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FCN K+   +L   L  QGF   A+HG +DQR R ++L  F   +  ++VA
Sbjct: 244 HYRPVSTLAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L +  ++  +  +E
Sbjct: 304 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGGLE 363

Query: 362 KLIEKKVDWL------NGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           +  ++ V+W             L PP+E + I      RK    P
Sbjct: 364 QAHKRDVEWHKLSELTPKSNEPLLPPMETLQIL---GGRKEKIRP 405


>gi|255553153|ref|XP_002517619.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223543251|gb|EEF44783.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 427

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 92/376 (24%), Positives = 159/376 (42%), Gaps = 3/376 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D+G+  P+ +Q + IP  +    V   A++G GKTA FVL  L  
Sbjct: 48  FRDFLLKPELLRAIIDSGFEHPSEVQHECIPQAILGMHVICQAKSGMGKTAVFVLSTLQQ 107

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    +V                   + F  Y  +  ++V      I       K E  
Sbjct: 108 IDPVAGQVAALVLCHTRELAYQICHEFERFSTYLPDLKVSVFYGGVNIKIHKDLLKNECP 167

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L N    ++ +    +  +     +Q I  + P+ +Q ++
Sbjct: 168 HVVVGTPGRILALARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPYDKQVMM 227

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q P  I V+  +               +  K        L   
Sbjct: 228 FSATLSKEIRPVCKKFMQAPMEIYVDDEAKLTLHGLVQHYIKLTELEKNR--KLNDLLDA 285

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L +  F    IH  + Q  R+    NFKEG  +++VA+
Sbjct: 286 LDFNQVVIFVKSVSRAAELNKLLMECNFPSICIHSGMSQEERLTKYKNFKEGHKRILVAT 345

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-EDIKHIDAIE 361
           DL  RG+DI  V  V N+D+P+ A+ Y+HR+GR GR G  G A T V+   D   ++ ++
Sbjct: 346 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQ 405

Query: 362 KLIEKKVDWLNGDLSS 377
              E  +  L   + +
Sbjct: 406 ARFEVDIKELPEQIDT 421


>gi|152981080|ref|YP_001353634.1| ATP-dependent RNA helicase DbpA [Janthinobacterium sp. Marseille]
 gi|151281157|gb|ABR89567.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 478

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 141/379 (37%), Positives = 209/379 (55%), Gaps = 10/379 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L LSP ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L 
Sbjct: 20  SFSSLALSPAMLSNLDSLGYREMTPIQAQSLPVILELRDLIAQAKTGSGKTAAFGIGLLQ 79

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L      V+    L++ PTRELA QV++   +  +       L +  G P   Q   LE
Sbjct: 80  KLNPTWFAVQ---ALVICPTRELADQVSNELRRLARATENIKVLTLCGGAPMRPQIASLE 136

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRI DH +R  + ++ ++ LV+DEADRM+DMGF   I  I S  P  RQT
Sbjct: 137 HGAHIVVGTPGRIRDHISRETINLSKVQTLVLDEADRMVDMGFYEEIAGIVSACPTRRQT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D++++ S  FL++P  I+V      ++  +  +   Y   +   A L +   
Sbjct: 197 LLFSATYPDDIRRASAEFLRDPVEIKVEAQHDDSQIEQRFYAVDYDDRNAAVATLLK--- 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + + FCN K +   L   L  QGFS  A++G ++QR R +IL  F   +  ++V
Sbjct: 254 -HYRPVSTLAFCNTKIHCRELAAELRAQGFSALALYGELEQRERDEILVLFANQSCSVLV 312

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +G V N DV    E +IHRIGRTGR    G A +L A  + K +  I
Sbjct: 313 ATDVAARGLDIQSLGAVINVDVSKDTEVHIHRIGRTGRGQDKGLALSLCAPNEKKWVKLI 372

Query: 361 EKLIEKKVDWLNGDLSSLN 379
           E+   K V W   DL  L 
Sbjct: 373 EEYQNKPVQWF--DLKDLE 389


>gi|313235130|emb|CBY25002.1| unnamed protein product [Oikopleura dioica]
          Length = 653

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 141/448 (31%), Positives = 215/448 (47%), Gaps = 27/448 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF    L P +   V  A Y  PTP+Q   +P++    D+   AQTG+GKTA+F++PML+
Sbjct: 198 DFVSAELGPIITENVKLAHYTVPTPVQKYAVPIIHAGRDIMSCAQTGSGKTAAFLMPMLS 257

Query: 62  ILEK-------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +          ++R   P  L+L PTREL  Q+     K+     +   ++ GG     
Sbjct: 258 NIFHNPGKIPRHQSRKAYPLALVLSPTRELTNQIYQEALKFAYRSKVRPCVIYGGADVGE 317

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L RG  +L+ TPGR+ D   RGK+ +     L +DEADRMLDMGF P I+ I   V
Sbjct: 318 QLRDLSRGCHLLVATPGRLADFLERGKVGLEFCRFLCLDEADRMLDMGFEPQIRRIIEKV 377

Query: 175 PFTRQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            F       +FSAT   ++Q ++ +FL N   + V    ST+  I   F         + 
Sbjct: 378 IFPSDRQTLMFSATFPKQIQALASDFLDNYIFLAVGRVGSTSANITQRFEYVQETEKVRK 437

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                           I+F   KK    L H L ++G+    IHG+ +Q+ R + +  FK
Sbjct: 438 LCELL---ENGQEMLTIVFTETKKGADYLDHFLHERGYQSTCIHGDRNQQEREEAVHLFK 494

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+ +AARGLDIP+V HV NFD+P+  + Y+HRIGRTGRAG  G A     ++
Sbjct: 495 SGQTPILVATAVAARGLDIPNVRHVINFDLPSEIDEYVHRIGRTGRAGNTGWATAFYNEK 554

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR---R 409
           + K  D + +L+ +    +   L  +               R N P+      + R   R
Sbjct: 555 NAKISDDLLQLLTEAKQEVPSKLKDIA-----------RSYRDNRPVRPNGGVYARSAAR 603

Query: 410 KKNY-SSQKSHIPLKESEKISKLQQDIQ 436
           +  Y ++       +E ++  K+ Q+ Q
Sbjct: 604 QAPYGATDMRFANKEEPQEKVKVPQNTQ 631


>gi|226468232|emb|CAX69793.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Schistosoma japonicum]
          Length = 606

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 132/427 (30%), Positives = 219/427 (51%), Gaps = 35/427 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A++ ++ ++   +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+GKTA+F++P+L 
Sbjct: 177 SWAEMNVADELKDVIKKVGYPEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLN 236

Query: 62  ILEKGR------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +++           + P  +I+ PTRELA Q+ +   K+G+   +    LIGG+  E Q
Sbjct: 237 WIQRLPKLERLEDTEQGPYAIIMAPTRELAQQIEEETVKFGRPLGIKTVSLIGGLSREDQ 296

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-- 173
             KL  GA+++I TPGR+ D      +++N    +V+DEAD+M+DMGF P + NI +   
Sbjct: 297 ALKLRMGAEIVIGTPGRLNDVLENRYMVLNQCTYIVLDEADKMIDMGFEPEVNNILTYLP 356

Query: 174 -----------------------VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
                                      RQT++F+ATM   +++++ ++L+ P  + + + 
Sbjct: 357 VTNEKPDNEDAEDDSKLLSNFATKHKYRQTVMFTATMPPAVERLARSYLRRPAMVYIGSA 416

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
               E +E        Q  ++  L         T    +   NQKK    L   LEK G+
Sbjct: 417 GKPTERVEQIVYMVSEQEKRRKLLEILAAGLDPTCYYFV---NQKKGADVLAKGLEKLGY 473

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG   Q  R   L++ K G  +++VA+D+A RG+DI DV  V N+D+    + Y+
Sbjct: 474 SAVVLHGGKGQEQREYALASLKSGQKEILVATDVAGRGIDIKDVSMVINYDMSKTIDEYV 533

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK-LIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
           HRIGRTGRAG+ G A +L+ KED      +++ LI+  V     +L++      K  +  
Sbjct: 534 HRIGRTGRAGKSGIAISLLTKEDAPVFYDLKQLLIQSPVSTCPHELANHPDAQTKPGVLA 593

Query: 390 HNHARKN 396
               R  
Sbjct: 594 AKKRRAE 600


>gi|194761004|ref|XP_001962722.1| GF15595 [Drosophila ananassae]
 gi|190616419|gb|EDV31943.1| GF15595 [Drosophila ananassae]
          Length = 389

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 201/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F + +L 
Sbjct: 17  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATFSIAILQ 76

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 77  QIDTSIRE---CQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 134 GCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F++ P  I V     T E I+  +V    +  K   L       
Sbjct: 194 LLSATMPPDVLEVSRCFMREPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDL--YD 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 252 TLSITQSVIFCNTRRKVDQLTQEMSSHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  +D + +  IE
Sbjct: 312 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIE 371

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 372 QFYHTTIEEMPANIADL 388


>gi|71019363|ref|XP_759912.1| hypothetical protein UM03765.1 [Ustilago maydis 521]
 gi|74701371|sp|Q4P7Z8|DBP5_USTMA RecName: Full=ATP-dependent RNA helicase DBP5
 gi|46099567|gb|EAK84800.1| hypothetical protein UM03765.1 [Ustilago maydis 521]
          Length = 456

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 97/388 (25%), Positives = 184/388 (47%), Gaps = 18/388 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  LGL   ++  +    Y KP+ IQ K +PL+LQ    ++ G +Q+GTGKTA+F+L M
Sbjct: 65  SFEALGLHENLLKGIYAMKYQKPSKIQEKALPLLLQNPPKNMIGQSQSGTGKTAAFILTM 124

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++    +   P+ + L P+RELA Q+ D      K  N+T  L +   P E +  + 
Sbjct: 125 LSRIDYDLQK---PQAIALAPSRELARQIMDVARTMSKFTNVTTCLCL---PDEVKRGEK 178

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++           ++G         ++ +  + +           + + +P + Q
Sbjct: 179 ITAQLIIGTPGKTFDMIKSKGIDTAAIKVFVLDEADNMLDQQSLGEQSIRVKNTMPKSCQ 238

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT    +   +         I +     + E I+  ++    +  K   L++   
Sbjct: 239 LVLFSATFPTNVYDFAVRIAPGANEIRLKQEELSVEGIKQFYMDCKDEDHKYEVLVEL-- 296

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +  T+   IIFC +++    +   + ++G  V ++HG ++   R + +  F++G  +++
Sbjct: 297 YNLLTIGQSIIFCAKRETADRIAQKMTQEGHKVDSLHGRLETADRDRTIDAFRDGKSKVL 356

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +++++ ARG+DI  V  V N+D+P        AE Y+HRIGRTGR GR G +   V  + 
Sbjct: 357 ISTNVIARGIDIQQVTLVINYDMPLTQTGEADAETYLHRIGRTGRFGRKGVSINFVHDQQ 416

Query: 354 -IKHIDAIEKLIEKKVDWL-NGDLSSLN 379
              ++D IEK ++ ++  +   DL  + 
Sbjct: 417 SWSYMDQIEKALKCQITRVATNDLEEME 444


>gi|260584215|ref|ZP_05851963.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
           elegans ATCC 700633]
 gi|260158841|gb|EEW93909.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
           elegans ATCC 700633]
          Length = 443

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 127/454 (27%), Positives = 211/454 (46%), Gaps = 20/454 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D  L P +  A+    +  PT IQ K IPL+L+   V G +QTG+GK+ SF+LP++
Sbjct: 1   MKFTDYQLQPFLQQALEKLSFSTPTKIQEKIIPLLLKGESVIGQSQTGSGKSHSFLLPLI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++  +  +++  T+      E   +V     +      L    + G        K  +
Sbjct: 61  HKIDPDKQELQLVITVPSRELAEQLVRVTSQLIEEAPTPILLEKCVGGTDKLRQVQKLQQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGRI D      LL+    ++V+DEAD   D+GF+  +  I S +P   Q 
Sbjct: 121 TAPHIVIGTPGRIFDLMRENALLIQTATMMVVDEADMTFDLGFLETVDEIASRMPKDLQM 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT+ D+++   + +L NPK I V      + TI           +K    +   L 
Sbjct: 181 SVFSATIPDKIKPFLKKYLGNPKIIHVENKQLVSPTI---TNQLLVTKTKNPLEVLFELI 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       +IF N K+    +   L ++   V  IHG+I  R R +++   ++   Q +V
Sbjct: 238 TLGHPYLMLIFVNTKQKADEVTAFLREKSLKVATIHGDIPARERRRVMKQIQQMEYQYVV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI  V HV N ++P+  E +IHR+GRTGR G  G+A T       + I  +
Sbjct: 298 ATDLAARGIDIEGVSHVINLEIPSELEFFIHRVGRTGRNGLAGQAITFYTPNQEQAIQTL 357

Query: 361 E-KLIE-KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY-SSQK 417
           E K I  + ++  NG+L           +  ++ +R+      +++  D R K      K
Sbjct: 358 EAKGISFETMELKNGEL-----------VESYDRSRREKRKNTQTSDLDPRLKGMIKKAK 406

Query: 418 SHIPLKESEKIS---KLQQDIQENDADSLGFRGN 448
            H+     +K++   K +Q I+    +    R  
Sbjct: 407 KHVKPGYKKKLTHEIKQKQRIERKKQNRQSARKK 440


>gi|255080620|ref|XP_002503883.1| predicted protein [Micromonas sp. RCC299]
 gi|226519150|gb|ACO65141.1| predicted protein [Micromonas sp. RCC299]
          Length = 754

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 134/405 (33%), Positives = 217/405 (53%), Gaps = 32/405 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  +  +V  A+   GY KP+PIQ+ +IP+ L + DV GIA+TG+GKT +FV+PML 
Sbjct: 323 SWEESTMPEQVKRAIQKVGYAKPSPIQMASIPIGLLKRDVIGIAETGSGKTCAFVVPMLA 382

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +++            P  L++ PTRELA Q+ +   K+ +  N  VA ++GG   E Q 
Sbjct: 383 YIQELPPMTDEVAALGPYALVMAPTRELAQQIEEETVKFAQFMNYRVASVVGGQSIEEQG 442

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV-- 174
            KL RG +++I TPGRI+D   R   ++     +V+DEADRM+DMGF P + ++   +  
Sbjct: 443 FKLRRGCEIVIGTPGRIIDVLERRYTVLQQCNYIVLDEADRMIDMGFEPQVISVMDSMSA 502

Query: 175 ----------------------PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS 212
                                    R T +FSATM   ++K++  +++NP  + + +   
Sbjct: 503 ESLKPEEEAEKIDEQGLEASLGTKYRMTYMFSATMPPSVEKLARKYMRNPAVVTIGSAG- 561

Query: 213 TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
             +T +          S +     +L+ SQ      IIF N K+ V ++ +   K G+SV
Sbjct: 562 --KTSDLIKQIVQWTTSNQKPAQLELVLSQYPDTQAIIFVNTKRVVDHVSNLCFKMGYSV 619

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
            AIHG   Q  R + L  FK+G   ++VA+D+A RG+D+  +  V N+++P   ENY HR
Sbjct: 620 GAIHGGKSQDQREESLRGFKQGEYDILVATDVAGRGIDVKGIDLVVNYEMPLVIENYTHR 679

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
           IGRTGRAGR G A + +  ED   +  +++L+    + + G+L++
Sbjct: 680 IGRTGRAGRQGTAVSFLTSEDTDVMYELKELLTNSGNHVPGELAN 724


>gi|149242263|ref|XP_001526437.1| hypothetical protein LELG_02995 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152032665|sp|A5E058|PRP5_LODEL RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|146450560|gb|EDK44816.1| hypothetical protein LELG_02995 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 994

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 126/462 (27%), Positives = 209/462 (45%), Gaps = 33/462 (7%)

Query: 1   MDFADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           + +  L +   V+  +  D G+ KP+PIQ + IP+VL   D+ G+A+TG+GKT S+VLPM
Sbjct: 387 LTWGQLLMPESVMSVIQNDLGFAKPSPIQCQAIPIVLSGRDMIGVAKTGSGKTLSYVLPM 446

Query: 60  LTILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +  ++          P  L+L PTRELA Q+     K+    +L V    GG   E Q  
Sbjct: 447 VRHIQDQLFPKPGEGPIGLVLSPTRELALQIEKEILKFSSTMDLKVCCCYGGSNIENQIS 506

Query: 118 KLERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           +L+RG +V++ TPGR++D           +     +V+DEADRM DMGF P IQ I + +
Sbjct: 507 ELKRGVNVIVATPGRLIDLLAANGGRITTLRRTTFVVLDEADRMFDMGFEPQIQKIFTQI 566

Query: 175 PFTRQTLLFSATMT-------DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
              +QT+LFSAT          ++       +     +  +  S      E        +
Sbjct: 567 RPDKQTVLFSATFPRKLEQLAKKVLHNPIEIIVGGVSVVASEISQEIILFEDTDQLMNHK 626

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH--SLEKQGFSVCAIHGNIDQRSRM 285
             K   +L +           ++F  ++ +   L      +           +   R   
Sbjct: 627 IQKLEDILSRFFDLGKNTGKVLVFVEKQTDADKLVSVLLKKAIPCIAIHGGKDQIDRKHA 686

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
               +  +  I +++A+ +AARGLD+ ++  V NF+ P+  E+Y+HR+GRTGRAG+HG+A
Sbjct: 687 IREFSDDQSGINVLIATSIAARGLDVRNLDLVVNFEPPSHLEDYVHRVGRTGRAGKHGEA 746

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            T V     K I  + K ++     ++  L          +IA     +  +   ++S+G
Sbjct: 747 ITFVDNTQEKEISILVKALKMSSRAVDSKLQ---------EIADKFMKKIESGEEKRSSG 797

Query: 406 F---------DRRKKNYSSQKSHIPLKESEKISKLQQDIQEN 438
           F         + R+ N   QK      + E   K  +D+ E 
Sbjct: 798 FGGKGLEKLQNVRETNMQLQKKMFGNFKKEDGKKSHRDLSEQ 839


>gi|303287833|ref|XP_003063205.1| dead-box ATP-dependent RNA helicase [Micromonas pusilla CCMP1545]
 gi|226455037|gb|EEH52341.1| dead-box ATP-dependent RNA helicase [Micromonas pusilla CCMP1545]
          Length = 479

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 126/392 (32%), Positives = 196/392 (50%), Gaps = 18/392 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
            FA+ G   +++ AV  AGY  PTPIQ ++ P+ LQ +D+  +A+TG+GKT  ++ P  M
Sbjct: 19  TFAEGGWPQQLLDAVTRAGYTSPTPIQAQSWPIALQGYDLISVAKTGSGKTVGYLFPGIM 78

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                    R   P   +L PTRELA Q+ +   K+G+   +    L GG P   Q ++L
Sbjct: 79  HIRARANGPRPVGPTVAVLAPTRELATQIQEETAKFGRAIGMFSVCLYGGAPKGMQLREL 138

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT-------- 171
             G  + I TPGR+ D    G + + +   +V+DEADRMLDMGF P I+ I         
Sbjct: 139 RSGPQIAIATPGRLNDFLESGAVNLGSATYVVLDEADRMLDMGFEPQIRKILARAPPARQ 198

Query: 172 ----SLVPFTRQTLLFSATMTDELQKVSENF-LQNPKRIEVNTPSSTAETIEHCFVATYA 226
               S       TL F+AT    + +V+        +    +T S  A       +    
Sbjct: 199 ARSISHWSPCDPTLFFTATWPKAVVRVATAILTNPIQVNIGDTDSLVANKDISQVIEVCG 258

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
            + K+  L++ L          I+FC+ K+    +  S+   G     IHG+ +QR R  
Sbjct: 259 GFQKQQRLMEVLRNPPAQPLKAIVFCSTKRMCDQIGRSMGGMG---AVIHGDKEQRERDY 315

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
           I++ FK G + ++VA+D+AARGLDI +V  V NFD PN+ E+Y+HRIGRTGRAG  G A 
Sbjct: 316 IINQFKSGRVPVLVATDVAARGLDIKEVNLVVNFDFPNQIEDYVHRIGRTGRAGNKGHAH 375

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           + +   +      +  ++      ++ ++  +
Sbjct: 376 SFIEPGEGNMARKLIPILRDAGQTVSPEIQEM 407


>gi|149187557|ref|ZP_01865854.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1]
 gi|148838437|gb|EDL55377.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1]
          Length = 416

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 140/417 (33%), Positives = 224/417 (53%), Gaps = 16/417 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            FADLGL P +V  + +  Y +PTPIQ  TIP +L+  D+ G A TG+GKTA+F LP   
Sbjct: 9   TFADLGLIPTLVERLEELEYSQPTPIQSHTIPYLLEGRDLVGGANTGSGKTAAFSLPILQ 68

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQ 115
            +    +    R      LIL PTRELA+QVA N + Y  +         + GG+    Q
Sbjct: 69  KICQQDKPNSRRGNTVSHLILVPTRELASQVAYNVKSYSYHLRNEIKTVAVFGGVSANPQ 128

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G+D+++ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  I +L+P
Sbjct: 129 MLALRGGSDIVVATPGRLLDLVSSNAIKLDQVQTLVLDEADRMLSLGFTEELNKILALLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +QTLLFSAT  +++  ++++ L NP  +++ +  ++        V    + +    L+
Sbjct: 189 EKKQTLLFSATFPEKVTSLAQHLLSNPVEVQLQSAETSTLVQRVFSVNKGQKTAVLAHLI 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q        +  +IF N K +  +L   L K+G +    HG+  Q +R ++L  FK G 
Sbjct: 249 KQHQW-----RQALIFVNAKNSCNHLAQKLSKRGITAEVFHGDKGQGARTRVLEGFKSGD 303

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           IQ+++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G   +L+  +D  
Sbjct: 304 IQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDDYH 363

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           H   IEK  + +++        ++      D ++   A          TG  ++K+N
Sbjct: 364 HFKVIEKKNKFRLEREQVAGFEVDD-----DQSEAYFAPMKPRAKPAGTGKKKKKRN 415


>gi|27545267|ref|NP_775365.1| ATP-dependent RNA helicase DDX19B [Danio rerio]
 gi|20977593|gb|AAM28224.1| DEAD box RNA helicase [Danio rerio]
          Length = 487

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 97/382 (25%), Positives = 176/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+ TGKTA+FVL M
Sbjct: 101 SFEELRLKPQLLQGVYAMGFNRPSKIQETALPMMLAEPPQNLIAQSQSRTGKTAAFVLAM 160

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++      + P  L + PT ELA Q     E+ GK+Y     +         +  KL
Sbjct: 161 LSHVDT---ENKWPECLCVCPTYELALQTGKVIEQMGKHYPEVQLVYAIRGNKLERGAKL 217

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +             +          ++ +    +   G       I  ++P T Q
Sbjct: 218 QEQIVIGTPGTVLDWCQKLKFIDPKKIKVFVLDEADVMIATQGHQDQSVRIQRMLPKTCQ 277

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  + +   ++  + +P  I++     T +TI+  +V   ++  K        +
Sbjct: 278 MLLFSATFEETVWNFAKRIVPDPNIIKLKREEETLDTIKQYYVICNSKEEK--FQALCNI 335

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L ++G  V  + G +    R  ++  F++G  +++
Sbjct: 336 YGAITIAQAMIFCHTRKTAGWLAGELSREGHQVALLSGEMQVEQRAAVIERFRDGKEKVL 395

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +  +K 
Sbjct: 396 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAINMADSKF 455

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I+    KK++ L+ D
Sbjct: 456 SMNTLNRIQDHFNKKIEKLDTD 477


>gi|17136248|ref|NP_476595.1| eukaryotic initiation factor 4a, isoform C [Drosophila
           melanogaster]
 gi|24582075|ref|NP_723137.1| eukaryotic initiation factor 4a, isoform A [Drosophila
           melanogaster]
 gi|24582078|ref|NP_723138.1| eukaryotic initiation factor 4a, isoform B [Drosophila
           melanogaster]
 gi|24582080|ref|NP_723139.1| eukaryotic initiation factor 4a, isoform D [Drosophila
           melanogaster]
 gi|12644381|sp|Q02748|IF4A_DROME RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A
 gi|5052532|gb|AAD38596.1|AF145621_1 eukaryotic initiation factor-4a [Drosophila melanogaster]
 gi|17861902|gb|AAL39428.1| GM14109p [Drosophila melanogaster]
 gi|21464294|gb|AAM51950.1| GH17619p [Drosophila melanogaster]
 gi|22945717|gb|AAF52317.2| eukaryotic initiation factor 4a, isoform A [Drosophila
           melanogaster]
 gi|22945718|gb|AAN10566.1| eukaryotic initiation factor 4a, isoform C [Drosophila
           melanogaster]
 gi|22945719|gb|AAN10567.1| eukaryotic initiation factor 4a, isoform B [Drosophila
           melanogaster]
 gi|22945720|gb|AAN10568.1| eukaryotic initiation factor 4a, isoform D [Drosophila
           melanogaster]
 gi|260166767|gb|ACX32995.1| LD22268p [Drosophila melanogaster]
          Length = 403

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F + +L 
Sbjct: 31  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQ 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 91  QIDTSIRE---CQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 148 GCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F+++P  I V     T E I+  +V    +  K   L       
Sbjct: 208 LLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDL--YD 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 266 TLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  +D + +  IE
Sbjct: 326 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIE 385

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 386 QFYHTTIEEMPANIADL 402


>gi|145345795|ref|XP_001417385.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577612|gb|ABO95678.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 480

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 130/389 (33%), Positives = 202/389 (51%), Gaps = 14/389 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L   V   +    +  PTP+Q   IP  L   D+   AQTG+GKTA+F  P++ 
Sbjct: 51  SFVDLDLGAAVNTNIKRCKFKNPTPVQKYAIPASLAGRDLMACAQTGSGKTAAFCFPIIA 110

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                        R   P  L+L PTRELA+Q+ +   K+     +   ++ GG P   Q
Sbjct: 111 GILKRGLQGGHMNRKTYPLALVLSPTRELASQIHEESRKFAYQTGVASCVIYGGAPAVEQ 170

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            + +ERG D+L+ TPGR++D  +R K+ ++ ++ L +DEADRMLDMGF P I+ I     
Sbjct: 171 FRAMERGCDILVATPGRLIDLIDRAKISLSRVQYLALDEADRMLDMGFEPQIRQIVDERD 230

Query: 176 FTRQ----TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
             R     T+LFSAT   E+Q+++ +FL +   + V    S+   I        + + K 
Sbjct: 231 MPRCGERQTMLFSATFPREIQRMASDFLDDYVFLTVGRVGSSHALITQSVERVTSYHEKS 290

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL      +      ++F   K+    L   L + G    +IHG+  Q+ R   L +F
Sbjct: 291 NMLLDL---VEAVPGLTLVFVETKRGADQLEDFLYQNGKPATSIHGDRTQQEREAALKSF 347

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF-TLVA 350
           + G   ++VA+D+AARGLDIP V HV NFD+P+  ++Y HRIGRTGRAG+ G+A    + 
Sbjct: 348 RAGKTPILVATDVAARGLDIPHVTHVINFDLPSDIDDYTHRIGRTGRAGKKGRATALFLE 407

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
            +D +    + +L+ +    +   L+ ++
Sbjct: 408 SKDGQMARPLTELMSEANQEVPTWLTQIS 436


>gi|307194191|gb|EFN76608.1| Eukaryotic initiation factor 4A-II [Harpegnathos saltator]
          Length = 423

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F + +L 
Sbjct: 51  NFDEMNLKEELLRGIYAYGFEKPSAIQQRAILPCIRGLDVIAQAQSGTGKTATFSISILQ 110

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G   +      IGG       +KL++
Sbjct: 111 QIDTSIKE---CQALILAPTRELAQQIQKVVIALGDFMHAECHACIGGTNVREDMRKLDQ 167

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  +R  L  ++I++ V+DEAD ML  GF   I ++  L+P   Q +
Sbjct: 168 GVHVVVGTPGRVYDMISRRALRASSIKLFVLDEADEMLSRGFKDQIHDVFKLLPNEVQVI 227

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++  VS+ F++NP RI V     T E I+  FV    +  K   L       
Sbjct: 228 LLSATMPSDVLDVSKCFMRNPIRILVKKEELTLEGIKQFFVYVEREDWKLETLCDL--YD 285

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L  S+ K+ F+V A+HG+++Q+ R  I+  F+ G+ ++++ 
Sbjct: 286 TLSITQAVIFCNTRRKVDWLTESMHKRDFTVSAMHGDMEQKERDLIMRQFRTGSSRVLIT 345

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V ++D + +  IE
Sbjct: 346 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTEDDKRTLKDIE 405

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     +D +  +++ L
Sbjct: 406 QFYNTHIDEMPMNVADL 422


>gi|149567279|ref|XP_001507308.1| PREDICTED: similar to DEAD Box Protein 5, partial [Ornithorhynchus
           anatinus]
          Length = 472

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 102/382 (26%), Positives = 176/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 86  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 145

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      + P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 146 LSQVEPLN---KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKV 202

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 203 SEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRDCQ 262

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V    +  K        L
Sbjct: 263 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCSNRDEK--FQALCNL 320

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L ++G  V  + G +    R  ++  F+ G  +++
Sbjct: 321 YGAITIAQAMIFCHTRKTAGWLAGELSREGHQVALLSGEMMVEQRAAVIERFRAGKEKVL 380

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  ++ +K 
Sbjct: 381 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMIDSKH 440

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK+D L+ D
Sbjct: 441 SMNILNRIQEHFNKKIDRLDTD 462


>gi|322490800|emb|CBZ26064.1| putative DEAD box RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 571

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 119/374 (31%), Positives = 199/374 (53%), Gaps = 8/374 (2%)

Query: 10  PKVVCA-VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILEKGR 67
           P+ + A +L+ G+  PTPIQ ++  +VL   D+ G+A+TG+GKT +F++P +  I  +  
Sbjct: 113 PQYLKAKLLEQGFKAPTPIQAQSWSIVLSGRDLVGVAKTGSGKTLAFIVPALAHIALQEP 172

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
            +      +I+       AQ  +         ++    + GG P   Q   L +G  +L+
Sbjct: 173 LKAGDGPMVIVLAPTRELAQQIEQEAIKVLPQSIRCGCIYGGAPKGPQLGLLRQGVHILV 232

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR++D     ++ +  +  LV+DEADRMLDMGF P ++ I   +   RQTL+FSAT 
Sbjct: 233 ATPGRLIDFMEIKRVNLLRVTYLVLDEADRMLDMGFEPQVRAICGQIRPDRQTLMFSATW 292

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
             ++Q ++ +F +N  RI V +    A           ++ +K      + L  +   + 
Sbjct: 293 PRDIQNLAASFQKNWVRINVGSMELLANKDVTQHFILTSEAAKLDE--LKRLMERHRNQR 350

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            ++FC  KK    L   L++ G    AIHG+ +QR R  IL  F++     +VA+D+AAR
Sbjct: 351 VLVFCKTKKTADYLEFQLKRNGVDCMAIHGDKEQRQREFILERFRKDPRLCVVATDVAAR 410

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH----IDAIEKL 363
           GLDI ++  V N+D P + ++Y+HRIGRTGRAG  G +FT++ K + +     +  + +L
Sbjct: 411 GLDIKELETVVNYDFPMQIDDYVHRIGRTGRAGAKGASFTMITKHETQLNASTVFQLVEL 470

Query: 364 IEKKVDWLNGDLSS 377
           +E+    + G L  
Sbjct: 471 VERAGQEVPGWLRE 484


>gi|117620037|ref|YP_857223.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117561444|gb|ABK38392.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 408

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 146/409 (35%), Positives = 228/409 (55%), Gaps = 8/409 (1%)

Query: 24  PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTL--ILEPT 81
            TP+Q + IP + +  DV   AQTGTGKTA+F LP+L  L    A V+       IL PT
Sbjct: 1   MTPVQQQAIPAIRRGRDVLASAQTGTGKTAAFALPILQRLVDNPAPVQPSNARVLILTPT 60

Query: 82  RELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGK 141
           RELAAQVA N   + K+ ++T   + GG   + Q +KL+ GA +++ TPGR+L+H     
Sbjct: 61  RELAAQVASNINDFAKHLDITTLTIYGGGKQDVQARKLKAGAHIIVATPGRLLEHLTACN 120

Query: 142 LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQN 201
           L ++ +E LV+DEADR+LDMGF   +Q I   V  TRQ LLFSAT ++ ++K++   L  
Sbjct: 121 LSLSGVECLVLDEADRILDMGFSADVQQILQAVNKTRQNLLFSATFSEAVKKLANLMLDK 180

Query: 202 PKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNL 261
           P+ + VN  +STA+T+ H          K+   L   L  +      ++F + +++   L
Sbjct: 181 PQIVSVNKQNSTADTVSHTVYPVEQ---KRKRELLSELIGKQNWPQVLVFASTRESCDEL 237

Query: 262 CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321
              L   G     +HG+  Q SR + L  F EG ++++VA+++AARGLDIPD+ +V N+D
Sbjct: 238 VAELNLDGIKSAVVHGDKAQGSRRRALREFTEGKLRVLVATEVAARGLDIPDLEYVVNYD 297

Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL---NGDLSSL 378
           +P  AE+Y+HRIGRTGRAG+ G A + V++E+ + +  IE LI +K+  +     ++SS 
Sbjct: 298 LPFLAEDYVHRIGRTGRAGKSGMAISFVSREEERTLLEIEALIGQKIRRIMVPGYEVSSR 357

Query: 379 NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEK 427
           +  ++++   +    R        +      K      K     K+  +
Sbjct: 358 DELIKQLQERRRFGKRPQREDNAAAQAMAEAKLQGQRLKRLAAAKKPRQ 406


>gi|319892614|ref|YP_004149489.1| ATP-dependent RNA helicase YqfR [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162310|gb|ADV05853.1| ATP-dependent RNA helicase YqfR [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464348|gb|ADX76501.1| ATP-dependent RNA helicase [Staphylococcus pseudintermedius ED99]
          Length = 444

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 126/443 (28%), Positives = 215/443 (48%), Gaps = 15/443 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F        ++ A+    + +PT IQ + IP ++++ ++ G +QTGTGK+ +F+LP+   
Sbjct: 6   FDQFRFDSTLIEAITALNFKQPTEIQQRVIPKIMKQVNLIGQSQTGTGKSHAFLLPLFQQ 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121
           ++     +  P+++I+ PTRELA Q+     +  +    + V+L IGG  FE   +K   
Sbjct: 66  IDP---EIHEPQSIIVAPTRELATQLYQAATQLSEYKTGIKVSLFIGGTDFEKDKQKTTV 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TP RI D    G L ++    LVIDEAD M+D+G I  +  I + +    +  
Sbjct: 123 QPQLIIGTPTRINDLAKIGALHVHLAHYLVIDEADLMIDLGLIEEVDQIAAKLDDDAKMA 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+   L      +L++P+ +EV + +   ++IE   + T      + A+       
Sbjct: 183 VFSATIPKSLHPFLNKYLEHPEFVEVKSETKNKKSIEFYLIPTKGSQKIEKAVAL---FE 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIFCN + +   L + L+ QG  V  IHG +  R R + +   +    Q ++A
Sbjct: 240 MLNPYLAIIFCNSRDSANQLANELQHQGIQVGMIHGGLTPRERKQQMKRIRNLEFQYVIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLA+RG+DI  V HV NFDVP   + + HR+GRTGR    G A TL   E+   I AIE
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPKDIDFFTHRVGRTGRGNYKGVAITLYTPEEDGLIAAIE 359

Query: 362 K--LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
               + + VD  +G+      P++  +  Q     K +    +      ++      K  
Sbjct: 360 NKGYLFENVDIKDGEF----KPIKAHNTRQLRQ--KQDDHITQKVKHKVKRNTKKKVKPG 413

Query: 420 IPLKESEKISKLQQDIQENDADS 442
              K  +++ +L++  +   +  
Sbjct: 414 YKKKYKQELEQLKRQEKRQFSRM 436


>gi|187608185|ref|NP_001119895.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Danio rerio]
 gi|169154730|emb|CAQ14635.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Danio rerio]
          Length = 709

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 141/433 (32%), Positives = 218/433 (50%), Gaps = 35/433 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            F D+ +   ++  +  + Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP   
Sbjct: 224 SFHDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKTKRDLMACAQTGSGKTAAFLLPVLS 283

Query: 59  -----------------MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL 101
                                  K   R + P +L+L PTRELA Q+ D   K+     +
Sbjct: 284 QIYSEGPGEALQATKASTQQENGKYVRRKQYPISLVLAPTRELALQIYDEARKFAYRSRV 343

Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
              ++ GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDM
Sbjct: 344 RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDM 403

Query: 162 GFIPYIQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           GF P I+      T     +RQT++FSAT   E+Q ++ +FL+    + V    ST+E I
Sbjct: 404 GFEPQIRRIVEQDTMPPKGSRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENI 463

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
               V       +   L       +D++   ++F   KK    L   L ++G++  +IHG
Sbjct: 464 TQKVVWVEENDKRSFLLDLLNATGKDSL--TLVFVETKKGADALEDFLYREGYACTSIHG 521

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           +  QR R + L  F+ G   +MVA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTG
Sbjct: 522 DRSQRDREEALHQFRSGRCPIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 581

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           R G  G A +    ++      +  ++ +    +   L +L          +H H   N 
Sbjct: 582 RVGNLGLATSFYNDKNSNITKDLLDILVEAKQEVPSWLENL--------AYEHQHKSTNR 633

Query: 398 PIPQK-STGFDRR 409
             P++ S GF  R
Sbjct: 634 GRPKRFSGGFGAR 646


>gi|124481673|gb|AAI33163.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Danio rerio]
          Length = 709

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 141/433 (32%), Positives = 218/433 (50%), Gaps = 35/433 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            F D+ +   ++  +  + Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP   
Sbjct: 224 SFHDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKTKRDLMACAQTGSGKTAAFLLPVLS 283

Query: 59  -----------------MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL 101
                                  K   R + P +L+L PTRELA Q+ D   K+     +
Sbjct: 284 QIYSEGPGEALQATKASTQQENGKYVRRKQYPISLVLAPTRELALQIYDEARKFAYRSRV 343

Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
              ++ GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDM
Sbjct: 344 RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDM 403

Query: 162 GFIPYIQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           GF P I+      T     +RQT++FSAT   E+Q ++ +FL+    + V    ST+E I
Sbjct: 404 GFEPQIRRIVEQDTMPPKGSRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENI 463

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
               V       +   L       +D++   ++F   KK    L   L ++G++  +IHG
Sbjct: 464 TQKVVWVEENDKRSFLLDLLNATGKDSL--TLVFVETKKGADALEDFLYREGYACTSIHG 521

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           +  QR R + L  F+ G   +MVA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTG
Sbjct: 522 DRSQRDREEALHQFRSGRCPIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 581

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           R G  G A +    ++      +  ++ +    +   L +L          +H H   N 
Sbjct: 582 RVGNLGLATSFYNDKNSNITKDLLDILVEAKQEVPSWLENL--------AYEHQHKSTNR 633

Query: 398 PIPQK-STGFDRR 409
             P++ S GF  R
Sbjct: 634 GRPKRFSGGFGAR 646


>gi|119173036|ref|XP_001239034.1| hypothetical protein CIMG_10056 [Coccidioides immitis RS]
 gi|303324075|ref|XP_003072025.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|118577977|sp|Q1DI07|SUB2_COCIM RecName: Full=ATP-dependent RNA helicase SUB2
 gi|240111735|gb|EER29880.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 443

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 153/375 (40%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q   IP  + + DV   A++G GKTA FVL  L  
Sbjct: 62  FRDFLLKPELLRAITDCGFEHPSEVQQVCIPTAILKVDVLCQAKSGLGKTAVFVLTTLNQ 121

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                G   + +         +        +         +           E  + K  
Sbjct: 122 LEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIEVLSSKDT 181

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+            +   L N    ++ +    +  +     +Q I    P  +Q 
Sbjct: 182 YPNIVVGTPGRLNALVREKKLSLRNIKAFVLDECDKMLDQIDMRRDVQEIFRSTPADKQV 241

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ E++ + + F++NP  + V+  +         +    ++  K   L +    
Sbjct: 242 MMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEAEKNRKLNEL--L 299

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF         L   L +  F   A+H  + Q  R+K    FKE   ++ V
Sbjct: 300 DNLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICV 359

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           A+D+  RG+DI  +    N+D+P  A++Y+HR+GR GR G  G + + V +++D+K +  
Sbjct: 360 ATDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRFGTKGLSISFVSSEDDMKTLKD 419

Query: 360 IEKLIEKKVDWLNGD 374
           IEK  E  +     +
Sbjct: 420 IEKRFEVALPEYPEE 434


>gi|313246316|emb|CBY35237.1| unnamed protein product [Oikopleura dioica]
          Length = 653

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 141/448 (31%), Positives = 216/448 (48%), Gaps = 27/448 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF    L P +   V  A Y  PTP+Q   +P++    D+   AQTG+GKTA+F++PML+
Sbjct: 198 DFVSAELGPIITENVKLAHYTVPTPVQKYAVPIIHAGRDIMSCAQTGSGKTAAFLMPMLS 257

Query: 62  ILEK-------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +          ++R   P  L+L PTREL  Q+     K+     +   ++ GG     
Sbjct: 258 NIFHNPGKIPRHQSRKAYPLALVLSPTRELTNQIYQEALKFAYRSKVRPCVIYGGADVGE 317

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q + L RG  +L+ TPGR+ D   RGK+ +     L +DEADRMLDMGF P I+ I   V
Sbjct: 318 QLRDLSRGCHLLVATPGRLADFLERGKVGLEFCRFLCLDEADRMLDMGFEPQIRRIIEKV 377

Query: 175 PFTRQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            F       +FSAT   ++Q ++ +FL+N   + V    ST+  I   F         + 
Sbjct: 378 IFPSDRQTLMFSATFPKQIQALASDFLENYIFLAVGRVGSTSANITQRFEYVQETEKVRK 437

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                           I+F   KK    L H L ++G+    IHG+ +Q+ R + +  FK
Sbjct: 438 LCELL---ENGQEMLTIVFTETKKGADYLDHFLHERGYQSTCIHGDRNQQEREEAVHLFK 494

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+ +AARGLDIP+V HV NFD+P+  + Y+HRIGRTGRAG  G A     ++
Sbjct: 495 SGQTPILVATAVAARGLDIPNVRHVINFDLPSEIDEYVHRIGRTGRAGNTGWATAFYNEK 554

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR---R 409
           + K  D + +L+ +    +   L  +               R N P+      + R   R
Sbjct: 555 NAKISDDLLQLLTEAKQEVPSKLKDIA-----------RSYRDNRPVRPNGGVYARSAAR 603

Query: 410 KKNY-SSQKSHIPLKESEKISKLQQDIQ 436
           +  Y ++       +E ++  K+ Q+ Q
Sbjct: 604 QAPYGATDMRFANKEEPQEKVKVPQNTQ 631


>gi|207742162|ref|YP_002258554.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
 gi|206593550|emb|CAQ60477.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
          Length = 471

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 144/405 (35%), Positives = 206/405 (50%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P V+  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F    L +
Sbjct: 16  FSTLALAPAVLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFA---LAL 72

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L +  AR    + ++L PTRELA QVA    +  +       L +  G P   Q   LE 
Sbjct: 73  LAQLDARRFDVQAMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEH 132

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH  RG L +  ++ LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 133 GAHVVVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPPERQTL 192

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K      +   R                    Y     K      LL  
Sbjct: 193 LFSATYPDGIAK----LSRQILRNPKEVKLEERHDDSKIRQRFYEVTDDKRLHAVGLLLK 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 249 HYRPVSTLAFCNTKQQCRDLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  +  IE
Sbjct: 309 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGNIE 368

Query: 362 KLIEKKVDWLNGDL------SSLNPPLEKIDIAQHNHARKNNPIP 400
           +++ ++V+W   D       + L PP+E + I      RK    P
Sbjct: 369 EVLGREVEWHRLDEIDAGNDAPLLPPMETLQIL---GGRKEKIRP 410


>gi|72392369|ref|XP_846985.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|62359340|gb|AAX79779.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
 gi|70803015|gb|AAZ12919.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
 gi|261330174|emb|CBH13158.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 569

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 133/382 (34%), Positives = 201/382 (52%), Gaps = 5/382 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F+DL     +  A +D GY  PTPIQ    P++L   D+ G+A+TG+GKT  F++P  
Sbjct: 74  LKFSDLVAPDTIHQAFIDLGYKSPTPIQSIAWPILLNSRDLVGVAKTGSGKTMGFMVPAA 133

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNK 117
           +  + +        P  L+L PTRELA Q+ +   K  +    +T A L GG P   Q +
Sbjct: 134 LHIMAQPPIRVGEGPIALVLAPTRELAVQIEEETRKVLRRVPTITTACLYGGTPKGPQIR 193

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G  V I TPGR++D        +  +  LV+DEADRMLDMGF   I+ I   +   
Sbjct: 194 ALRAGVHVCIATPGRLIDLLEIRAANLLRVTFLVLDEADRMLDMGFEVQIRKICQQIRKD 253

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTL+FSAT   E++ ++ +F ++  R+ V +    A       V+    Y K+   L++
Sbjct: 254 RQTLMFSATWPQEIRNLAASFQRDFIRVHVGSEDLIANADVTQHVSVVEDYDKQR-RLEE 312

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +LQ     +  I    ++             G SV AIHG+ +Q  R  +L  F+     
Sbjct: 313 ILQKVGKQRVLIFVKTKRTADSLHHSLQRLIGGSVMAIHGDKEQSQRDYVLDRFRRDERS 372

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED-IKH 356
           ++VA+D+AARGLDI ++  V NFD+P   E+Y+HRIGRTGRAG+ G A+T V+  D  K 
Sbjct: 373 VLVATDVAARGLDIKNLDVVINFDMPTNIEDYVHRIGRTGRAGQRGDAYTFVSGADPSKT 432

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
           +  +  ++ +    +   L SL
Sbjct: 433 VRDLIDILRRANQEIPPGLHSL 454


>gi|83748492|ref|ZP_00945513.1| Hypothetical Protein RRSL_01624 [Ralstonia solanacearum UW551]
 gi|83724796|gb|EAP71953.1| Hypothetical Protein RRSL_01624 [Ralstonia solanacearum UW551]
          Length = 499

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 144/405 (35%), Positives = 206/405 (50%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P V+  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F    L +
Sbjct: 44  FSTLALAPAVLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFA---LAL 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L +  AR    + ++L PTRELA QVA    +  +       L +  G P   Q   LE 
Sbjct: 101 LAQLDARRFDVQAMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEH 160

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH  RG L +  ++ LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 161 GAHVVVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPPERQTL 220

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D + K      +   R                    Y     K      LL  
Sbjct: 221 LFSATYPDGIAK----LSRQILRNPKEVKLEERHDDSKIRQRFYEVTDDKRLHAVGLLLK 276

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FCN K+   +L   L  QGF   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 277 HYRPVSTLAFCNTKQQCRDLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 336

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA + G A +L + +++  +  IE
Sbjct: 337 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGNIE 396

Query: 362 KLIEKKVDWLNGDL------SSLNPPLEKIDIAQHNHARKNNPIP 400
           +++ ++V+W   D       + L PP+E + I      RK    P
Sbjct: 397 EVLGREVEWHRLDEIDAGNDAPLLPPMETLQIL---GGRKEKIRP 438


>gi|195342874|ref|XP_002038023.1| GM18587 [Drosophila sechellia]
 gi|195576880|ref|XP_002078301.1| GD23375 [Drosophila simulans]
 gi|194132873|gb|EDW54441.1| GM18587 [Drosophila sechellia]
 gi|194190310|gb|EDX03886.1| GD23375 [Drosophila simulans]
          Length = 403

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F + +L 
Sbjct: 31  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQ 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 91  QIDTSIRE---CQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 148 GCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F+++P  I V     T E I+  +V    +  K   L       
Sbjct: 208 LLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDL--YD 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 266 TLSITQSVIFCNTRRKVDQLTQEMSLHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  ED + +  IE
Sbjct: 326 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDEDRRILKDIE 385

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 386 QFYHTTIEEMPANIADL 402


>gi|327268480|ref|XP_003219025.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 3 [Anolis
           carolinensis]
          Length = 709

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 138/428 (32%), Positives = 220/428 (51%), Gaps = 29/428 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+  
Sbjct: 225 SFSDVDMGEIIMGNIELTRYTRPTPVQKYAIPIIKDKRDLMACAQTGSGKTAAFLLPILS 284

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 285 QIYTDGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSKVRPCVV 344

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 345 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 404

Query: 167 IQN----ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      RQT++FSAT   E+Q ++ +FL+    + V    ST+E I    V
Sbjct: 405 IRRIVEKDTMPPKGVRQTMMFSATFPKEIQMLARDFLEEYIFLAVGRVGSTSENITQKVV 464

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L ++G++  +IHG+  QR
Sbjct: 465 WVEDSDKRSFLLDLLDATGKDSL--TLVFVETKKGADSLEDFLFREGYACTSIHGDRSQR 522

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 523 DREEALHQFRSGRSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 582

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ- 401
           G A +   + +I     +       +D L      +   LE +   QH+    +    + 
Sbjct: 583 GLATSFFNERNINITKDL-------LDLLVEAKQEVPSWLENMAYEQHHKGGSSRGRSKG 635

Query: 402 KSTGFDRR 409
           + +GF  R
Sbjct: 636 RFSGFGAR 643


>gi|327268478|ref|XP_003219024.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Anolis
           carolinensis]
          Length = 706

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 138/428 (32%), Positives = 220/428 (51%), Gaps = 29/428 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+  
Sbjct: 222 SFSDVDMGEIIMGNIELTRYTRPTPVQKYAIPIIKDKRDLMACAQTGSGKTAAFLLPILS 281

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 282 QIYTDGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSKVRPCVV 341

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 342 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 401

Query: 167 IQN----ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      RQT++FSAT   E+Q ++ +FL+    + V    ST+E I    V
Sbjct: 402 IRRIVEKDTMPPKGVRQTMMFSATFPKEIQMLARDFLEEYIFLAVGRVGSTSENITQKVV 461

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L ++G++  +IHG+  QR
Sbjct: 462 WVEDSDKRSFLLDLLDATGKDSL--TLVFVETKKGADSLEDFLFREGYACTSIHGDRSQR 519

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 520 DREEALHQFRSGRSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 579

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ- 401
           G A +   + +I     +       +D L      +   LE +   QH+    +    + 
Sbjct: 580 GLATSFFNERNINITKDL-------LDLLVEAKQEVPSWLENMAYEQHHKGGSSRGRSKG 632

Query: 402 KSTGFDRR 409
           + +GF  R
Sbjct: 633 RFSGFGAR 640


>gi|327268476|ref|XP_003219023.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 1 [Anolis
           carolinensis]
          Length = 713

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 138/428 (32%), Positives = 220/428 (51%), Gaps = 29/428 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+  
Sbjct: 229 SFSDVDMGEIIMGNIELTRYTRPTPVQKYAIPIIKDKRDLMACAQTGSGKTAAFLLPILS 288

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 289 QIYTDGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSKVRPCVV 348

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 349 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 408

Query: 167 IQN----ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      RQT++FSAT   E+Q ++ +FL+    + V    ST+E I    V
Sbjct: 409 IRRIVEKDTMPPKGVRQTMMFSATFPKEIQMLARDFLEEYIFLAVGRVGSTSENITQKVV 468

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L ++G++  +IHG+  QR
Sbjct: 469 WVEDSDKRSFLLDLLDATGKDSL--TLVFVETKKGADSLEDFLFREGYACTSIHGDRSQR 526

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 527 DREEALHQFRSGRSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 586

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ- 401
           G A +   + +I     +       +D L      +   LE +   QH+    +    + 
Sbjct: 587 GLATSFFNERNINITKDL-------LDLLVEAKQEVPSWLENMAYEQHHKGGSSRGRSKG 639

Query: 402 KSTGFDRR 409
           + +GF  R
Sbjct: 640 RFSGFGAR 647


>gi|294893610|ref|XP_002774558.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239879951|gb|EER06374.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 639

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 120/397 (30%), Positives = 182/397 (45%), Gaps = 23/397 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++ A+   G  +PT IQ++ +P  L   D+ GIA TG+GKT  F +P + 
Sbjct: 194 SFKEMLFPQGILEALKSKGISRPTQIQMQGLPEALLGRDLIGIAFTGSGKTLVFAIPAIL 253

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL-------------TV 103
              +   R  +     P  L++ P+RELA Q  +  E Y                     
Sbjct: 254 RAMEMEMRAPVTDSEGPFCLLIAPSRELAQQTHEVVEYYASYLTGLPSSRSRHRLPRLRC 313

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163
            L IGG     Q   + RG  ++  TPGR+    N     +     + +DEADRM+D+GF
Sbjct: 314 QLCIGGESLGRQAANVRRGVHIVTATPGRLNHMLNEKMFTLAQCVYICLDEADRMVDLGF 373

Query: 164 IPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
              ++N        RQTLLFSATM  ++Q+    F  +     V      A       V 
Sbjct: 374 EDEVRNTLDHFGHQRQTLLFSATMPRKIQE----FATSALVNPVTINVGRAGAANLDVVQ 429

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
                  +  L   L   Q T    ++FC+ K +   +   L  +G   CAIHG ++Q  
Sbjct: 430 EVEYVKAESKLTYLLQCLQKTAPPVMVFCSDKASCDEVLEYLLLKGVGACAIHGGLEQSE 489

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R K    FK G   +++ +D+A++GLD P + HV N+D+P   ENY+HRIGRTGR GR G
Sbjct: 490 RHKSTRLFKSGAKDVLIGTDVASKGLDFPAIQHVINYDMPKEIENYVHRIGRTGRCGRTG 549

Query: 344 KAFTLVAKE-DIKHIDAIEKLIEKKVDWLNGDLSSLN 379
            A T + K  D   +  ++ ++E+    +   L  L 
Sbjct: 550 VATTFINKSVDETVLLDLKAILEEAGQRVPPFLEHLE 586


>gi|294875456|ref|XP_002767330.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239868893|gb|EER00048.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 364

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 97/363 (26%), Positives = 163/363 (44%), Gaps = 4/363 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74
            + + G+ KP+PIQ ++IP  L   ++   A+ GTGKTASF++PML  +           
Sbjct: 2   GIFEKGFEKPSPIQEESIPPALAGKNILARAKNGTGKTASFLIPMLEKVNTDITDGIQGL 61

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
             +L PTRELA Q +   ++ GK  +  V +  GG        +L     +L+ TPGR+L
Sbjct: 62  --VLVPTRELALQTSAVAKELGKYMDAQVMVTTGGTSLRDDIMRLYNTVHILVGTPGRVL 119

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D  N+G   +++   + + +    L       +           +  +   + T  +  +
Sbjct: 120 DLTNKGVCSLSDTCTMCVMDEADKLLSPEFQPVVEELVRFLPKEKRQILMFSATFPVTIL 179

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
              F        V        T++           ++       L S+ T+   IIFCN 
Sbjct: 180 D--FKNKYMPDAVEINLMEELTLKGVTQFYAFVEERQKVHCLNTLFSKLTINQAIIFCNS 237

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
              V  L   + + GFS   IH  + Q  R ++  +F+ G  + +V+SDL  RG+DI +V
Sbjct: 238 VTRVELLAKKITELGFSCFYIHARMYQSHRNRVFHDFRNGACRCLVSSDLFTRGIDIENV 297

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
             V NFD P  +E Y+HRIGR+GR G  G A  ++  +D  ++  IE  +  ++  +   
Sbjct: 298 NVVINFDFPKNSETYLHRIGRSGRFGHLGIAINMLTYDDRFNLYRIEHELGTEIKPIPSH 357

Query: 375 LSS 377
           +  
Sbjct: 358 IDE 360


>gi|71279965|ref|YP_269372.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71145705|gb|AAZ26178.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 399

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 133/372 (35%), Positives = 209/372 (56%), Gaps = 5/372 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    L   ++  V   GY +PTPIQ + IP ++  +D+ GIAQTGTGKTA+F LP++ 
Sbjct: 3   EFKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIIN 62

Query: 62  ILEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
              +     + +  R+LIL PTRELA+Q+  N + Y     L   ++ GG+  +AQ   +
Sbjct: 63  KFGRNKIDIKAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDSI 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E G D+L+ TPGR+LD    G +    +E+ V+DEAD MLDMGF   +Q+I S +P +RQ
Sbjct: 123 ELGLDILVATPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E++ ++E  L +P +I++   + T + +                      
Sbjct: 183 TLLFSATMPAEIEILAEAILTDPTKIQITAETVTIDLVNQSVYHLDKSNKVPLLFNILTK 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  +IFC  K     +  +LEK   +  ++H    Q  R + L NFK+ T++++
Sbjct: 243 ADY---EKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRVL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ ++  V N+++P    NYIHRIGRT RAG+ G A +   + DI+ +  
Sbjct: 300 VATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIRQLTN 359

Query: 360 IEKLIEKKVDWL 371
           IE  I + +  +
Sbjct: 360 IENSIGQVIPVV 371


>gi|164683438|gb|ABY66383.1| eukaryotic initiation factor 4A [Plutella xylostella]
          Length = 422

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 203/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L  +++  +   G+ KP+ IQ + I   +Q  DV   AQ+GTGKTA+F + +L 
Sbjct: 50  SFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 109

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G + N      IGG       ++LE 
Sbjct: 110 QIDTSIRE---CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDMRQLES 166

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  N I++ V+DEAD ML  GF   I ++  ++    Q +
Sbjct: 167 GVHVVVGTPGRVYDMITRRALRANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVI 226

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM D++ +VS  F++ P RI V     T E I+  F++   +  K   L       
Sbjct: 227 LLSATMPDDVLEVSRCFMREPIRILVQKEELTLEGIKQFFISIEQEEWKLETLCDL--YD 284

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L  S+ ++ F+V A+HG++DQR R  I+  F+ G+ ++++ 
Sbjct: 285 TLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLIT 344

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V + D + +  IE
Sbjct: 345 TDLLARGIDVQQVSCVINYDLPTNRENYIHRIGRGGRFGRKGIAINFVTEADRRALKDIE 404

Query: 362 KLIEKKVDWLNGDLSSL 378
                 +  +  D+++L
Sbjct: 405 DFYHTSIIEMPSDVANL 421


>gi|143456572|sp|Q0D8N0|RH53_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 53
 gi|218199081|gb|EEC81508.1| hypothetical protein OsI_24871 [Oryza sativa Indica Group]
 gi|222636421|gb|EEE66553.1| hypothetical protein OsJ_23067 [Oryza sativa Japonica Group]
          Length = 602

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 114/389 (29%), Positives = 207/389 (53%), Gaps = 2/389 (0%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LG+SP +V  +   G  +  PIQ   +   +Q  D+ G A+TGTGKT +F +P++  + +
Sbjct: 89  LGISPWIVERLAARGITRLFPIQRAVLDPAMQGKDMIGRARTGTGKTLAFGIPIMDRILR 148

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
              +    R  +               +++ ++  L    + GG+P   Q + L  G DV
Sbjct: 149 HNEKNGSGRNPLAIILAPTRELARQVEKEFKESAPLDSLCVYGGVPISHQMRALNYGVDV 208

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           ++ TPGRI+D   RG L ++ I+ +V+DEAD+ML +GF   ++ I   +P  RQ++LFSA
Sbjct: 209 VVGTPGRIIDLLRRGVLNLSEIQFVVLDEADQMLAVGFDEDVEVIMENLPQNRQSMLFSA 268

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           TM   ++K++  +L++P  I++               +  +++  K ++L  L++     
Sbjct: 269 TMPSWIRKITSKYLKDPIIIDLVGDEDQKLPEGISLYSIASEHYGKPSILGPLIKEHANG 328

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F   K+    L ++   + ++  A+HG+I Q  R + LS F++G   ++VA+D+A
Sbjct: 329 GKCIVFTQTKREADRLAYA-MGRSYACQALHGDISQNQRERTLSGFRDGRFNILVATDVA 387

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARGLDIP+V  V ++++PN +E ++HR GRT RAG+ G A  +   +  + +  IE+ I 
Sbjct: 388 ARGLDIPNVDLVIHYELPNTSELFVHRSGRTARAGKKGSAILIYTNDQARAVRIIEQDIG 447

Query: 366 KKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
            K   L   +   +   +  ++ + N +R
Sbjct: 448 CKFTELP-KIEVADEASDMFNVVRDNRSR 475


>gi|126644825|ref|XP_001388129.1| DEAD/DEAH box ATP-dependent RNA helicase [Cryptosporidium parvum
           Iowa II]
 gi|126117357|gb|EAZ51457.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Cryptosporidium
           parvum Iowa II]
 gi|323509235|dbj|BAJ77510.1| cgd3_3920 [Cryptosporidium parvum]
          Length = 519

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 112/366 (30%), Positives = 181/366 (49%), Gaps = 4/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F    +  ++  A+ + G    T IQ K IP +L   DV G A+TG+GKT +F++P  
Sbjct: 26  VKFESSNICDQLKKALKEMGMETMTEIQAKAIPRILNGKDVLGAAKTGSGKTLAFLIPAA 85

Query: 61  TILEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L       R    +I + PTREL+ Q+ +   +  K    T  L++GG     + +KL
Sbjct: 86  NLLYNVEFLPRNGTGVIVISPTRELSLQIYEVCRELCKYLPQTHGLVMGGANRRTEAEKL 145

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEIL-VIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +G ++L+ TPGR+LDH    K  +    +  VIDEADR+L++GF   +  I  L+P  R
Sbjct: 146 SKGVNILVATPGRLLDHLQNTKQFLFKNLLNLVIDEADRILEIGFEEEMNQIIKLLPKER 205

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT LFSAT T ++             +  +  +S+  T+           + +  LL   
Sbjct: 206 QTSLFSATQTTKVAD-LVRLSLKNPVLVESKNTSSIATVSGLEQGYVIAQANQRFLLLYT 264

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  ++F +   +             +  +IHG   Q SRM+   +F      L
Sbjct: 265 FLKKNRDKKVMVFFSSCMSTKFHEELFNYVDLTCSSIHGKKKQTSRMQTYYDFCSADKGL 324

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP+V  +  +D P+    YIHR+GRT R AG  GKA   +  E+I  +
Sbjct: 325 LLCTDVAARGLDIPNVDWIVQYDPPDDPREYIHRVGRTARGAGGTGKALLFLLPEEIAFL 384

Query: 358 DAIEKL 363
             ++K+
Sbjct: 385 QYLKKM 390


>gi|110339425|gb|ABG67961.1| eukaryotic initiation factor 4A [Callinectes sapidus]
          Length = 432

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   G+ KP+ IQ + I   ++ HD    AQ+GTGKTA+F + +L 
Sbjct: 60  SFDDMNLDEALLRGIYAYGFEKPSAIQQRAILPCIRGHDAIAQAQSGTGKTATFSISILQ 119

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +    + LIL PTRELA Q+       G   N+T    IGG       ++LE 
Sbjct: 120 RIDV---KSNETQALILAPTRELAQQIQKVVLALGDYMNVTCHACIGGTNLREDMRRLEM 176

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D  NR  L   +I++ V+DEAD ML  GF   I ++   +P   Q +
Sbjct: 177 GVQIIVGTPGRVYDMINRRVLNPKHIKMFVLDEADEMLSRGFKDQIYDVFRFLPSEVQVV 236

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++  V+  F+++P  I V     T E I+  +V    +  K   L       
Sbjct: 237 LLSATMPSDVMDVTTKFMRDPITILVKKEELTLEGIKQFYVNVEKEDWKLETLCDL--YE 294

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + ++ F+V A+HG++DQ+ R  I+  F+ G+ ++++ 
Sbjct: 295 TLTITQAVIFCNTRRKVDWLTDKMHQRDFTVSAMHGDMDQKERDVIMREFRSGSSRVLIT 354

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  ED + +  IE
Sbjct: 355 TDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTSEDTRILQDIE 414

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 415 EHYRTSIEEMPMNVADL 431


>gi|330793454|ref|XP_003284799.1| hypothetical protein DICPUDRAFT_28243 [Dictyostelium purpureum]
 gi|325085293|gb|EGC38703.1| hypothetical protein DICPUDRAFT_28243 [Dictyostelium purpureum]
          Length = 558

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 139/440 (31%), Positives = 214/440 (48%), Gaps = 37/440 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ +   ++  +   G  KP+PIQ++ +P+VL   D+ GIA TG+GKT  F LPM+ 
Sbjct: 110 TFKEMKIPRSIIQVLDKKGIKKPSPIQMQGLPVVLSGRDMIGIAYTGSGKTLVFTLPMVL 169

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   ++ +     P  LIL P+RELA Q  D    +  +            L IGGI
Sbjct: 170 FALEEEKKLPIIQGEGPFGLILSPSRELARQTYDLVNSFTDSLAKDGFPKLRTLLAIGGI 229

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q +   +G  +++ TPGR+L+   + K+  N  + L +DEADR++D GF   I+++
Sbjct: 230 DMREQEQVFRKGIHMIVATPGRLLELLQKKKINFNLCKYLGLDEADRLIDFGFEDDIRSV 289

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTLLFSATM  ++Q+    F ++   + V      A                
Sbjct: 290 LDHFTNQRQTLLFSATMPKKIQE----FARSALVLPVEVNVGRAGAANLNVTQEVEFVKP 345

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    +IFC  KK+V ++   L  +     +IHG+  Q  R   +  
Sbjct: 346 EAKIVYLLECLQKTPPPVLIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQEEREGAIKA 405

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD PD+ HV NFD+P   ENYIHRIGRTGR G  G A T + 
Sbjct: 406 FREGKKDVLVATDVASKGLDFPDIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTFIN 465

Query: 351 KEDIK------HIDAIEKLIEKKVD----WLNGD------LSSLNPPLEKIDIAQHNHAR 394
           K + +          IE   ++KV      +  D      L  L  P E  D   H    
Sbjct: 466 KTNTESLLLDLKYLLIE--AKQKVPPALLEIPDDNQYLQKLQDLPKPCEYCDGRGHRLV- 522

Query: 395 KNNPIPQKSTGFDRRKKNYS 414
            N P  +K++    +K+N+S
Sbjct: 523 -NCPKLKKTS--RSKKRNFS 539


>gi|312279014|gb|ADQ63671.1| Peptide chain release factor 2 [Streptococcus thermophilus ND03]
          Length = 447

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 184/366 (50%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ +  + +PTP+Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDFNFKDYIQEALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L      V++    I  P+RELA Q+  + ++  K+ +  + ++      + Q +  +
Sbjct: 61  EKLNPESRDVQVV---ITAPSRELATQIYQSTKQIAKHSDTEIRVVNYVGGTDKQRQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D F  G L ++     V+DEAD  +DMGF+  +  I + +P  
Sbjct: 118 LKVAQPHIVIGTPGRIYDLFKSGDLAIHKAHTFVVDEADMTMDMGFLATVDKIAASLPKE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEQIKTSTVIADTI---DNWLVSTKGRNKNGQIL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K+   +L   L   G  V  IHG I  R R +I++  K+   +
Sbjct: 235 EILKGMQPYLAMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLEFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 RELEKM 360


>gi|195473739|ref|XP_002089150.1| eIF-4a [Drosophila yakuba]
 gi|194175251|gb|EDW88862.1| eIF-4a [Drosophila yakuba]
          Length = 415

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 201/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F + +L 
Sbjct: 43  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATFSIAILQ 102

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 103 QIDTSIRE---CQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 159

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 160 GCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 219

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F++ P  I V     T E I+  +V    +  K   L       
Sbjct: 220 LLSATMPPDVLEVSRCFMREPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDL--YD 277

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 278 TLSITQSVIFCNTRRKVDQLTQEMSLHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 337

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  +D + +  IE
Sbjct: 338 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIE 397

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 398 QFYHTTIEEMPANIADL 414


>gi|19075484|ref|NP_587984.1| U5 snRNP-associated protein Prp28 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|74654533|sp|Q9Y7T7|PRP28_SCHPO RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|4539604|emb|CAB40015.1| U5 snRNP-associated protein Prp28 (predicted) [Schizosaccharomyces
           pombe]
          Length = 662

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 116/389 (29%), Positives = 199/389 (51%), Gaps = 25/389 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ + GL  +++  +    Y +P+ IQ   IP++LQR D+ GIA+TG+GKTA+F++P++ 
Sbjct: 250 NWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLII 309

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                           P  ++L PTRELA Q+     K+ +        ++GG  FE Q+
Sbjct: 310 AISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQS 369

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT----- 171
            ++ +GA +++ TPGR+LD   R   +++    +V+DEADRMLDMGF   +  I      
Sbjct: 370 FQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPS 429

Query: 172 --------------SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
                         +     RQT++FSAT+   +  +++++L  P  + +       + +
Sbjct: 430 SNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRV 489

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
           E           K    ++++L+S       IIF N K+N+  +   L   G+    +HG
Sbjct: 490 EQRVEMISDDSKKWR-RVEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHG 548

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           +  Q  R + +   +  T  ++VA+D+A RG+DIP+V  V N+++    E+Y HRIGRTG
Sbjct: 549 SKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTG 608

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RAG+ G A T +  ED      +  L+ +
Sbjct: 609 RAGKSGTAITFLGPEDTDVYYDLRVLLSR 637


>gi|476338|gb|AAB65852.1| putative RNA helicase [Caenorhabditis elegans]
          Length = 417

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 96/395 (24%), Positives = 166/395 (42%), Gaps = 20/395 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q + IP  +   DV   A++G GKTA FV+  L  
Sbjct: 42  FRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE     V +             ++  + F KY     + V      I  + +    +  
Sbjct: 102 LEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCP 161

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    +    L      ++    +    +G     +++       +Q ++
Sbjct: 162 HIVVGTPGRMLALARSGKLKLDKVKYFVLD---ECDKMIGDADMRRDV----QEIKQVMM 214

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  EL+ V + F+Q+P  + V+  +               +  K        L   
Sbjct: 215 FSATLPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNR--RLLNLLDA 272

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    K    L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 273 LEFNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVAT 332

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           DL  RG+DI  V  VFN+D+P  +++Y+HR+ R GR G  G A T V+ E D K +++++
Sbjct: 333 DLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKTLNSVQ 392

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
              +  +  L           EKID++ +   R N
Sbjct: 393 DRFDISITELP----------EKIDVSTYIEGRTN 417


>gi|67971298|dbj|BAE01991.1| unnamed protein product [Macaca fascicularis]
          Length = 478

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 92  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 151

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      R P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 152 LSRVEPAD---RYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 208

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 209 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 268

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        L
Sbjct: 269 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 326

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 327 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 386

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 387 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 446

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 447 SMNILNRIQEHFNKKIERLDTD 468


>gi|296231548|ref|XP_002761184.1| PREDICTED: ATP-dependent RNA helicase DDX19A isoform 1 [Callithrix
           jacchus]
          Length = 478

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 179/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 92  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 151

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      R P+ L L PT ELA Q  +  E+ GK Y               + +K+
Sbjct: 152 LSRVEPAD---RYPQCLCLSPTYELALQTGNVIEQMGKFYPELKLAYAVRGNKLERGQKI 208

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 209 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 268

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        L
Sbjct: 269 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 326

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 327 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 386

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 387 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 446

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 447 SMNILNRIQEHFNKKIERLDTD 468


>gi|158300210|ref|XP_001689233.1| AGAP012358-PB [Anopheles gambiae str. PEST]
 gi|158300212|ref|XP_320199.4| AGAP012358-PA [Anopheles gambiae str. PEST]
 gi|157013048|gb|EDO63299.1| AGAP012358-PB [Anopheles gambiae str. PEST]
 gi|157013049|gb|EAA00143.4| AGAP012358-PA [Anopheles gambiae str. PEST]
          Length = 598

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 108/430 (25%), Positives = 185/430 (43%), Gaps = 20/430 (4%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L    G+S ++V  +    Y  PTP+Q++ IP++L+ H +   A TG+GKTA+F++
Sbjct: 140 SFDQLSTDYGVSNRLVANIQSC-YSTPTPVQMQAIPILLKTHSLHACAPTGSGKTAAFLI 198

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           P+L  L+K        R LI+ PTRELA Q      + G   NL   ++      +  + 
Sbjct: 199 PILHHLKKPM--KCGFRALIICPTRELAKQTQREALRLGDEMNLRTHVIHMVDDPKKCDY 256

Query: 118 KL---ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS-- 172
                     ++                +  +    V+ +    L        ++     
Sbjct: 257 SFASGRSYDILVTTPNRICYLLSQNPPKIDLSNIQWVVIDEADKLFEDSKNSFRDQLDTV 316

Query: 173 ---LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                  ++   LFSAT T ++       + N  R  +   +   E ++   + T ++  
Sbjct: 317 LTACNNPSKTIALFSATQTRDVNLWVAKNVPNRIRFSIGLINGAVELVDQKLLFTGSESG 376

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           K  A  + + Q        ++F   K     L   L   G +V  IH +  QR R  ++ 
Sbjct: 377 KLLAFREMVAQGLHPP--VLVFVQSKDRAQQLFTELIYDGLNVDVIHSDRTQRERDNVVR 434

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+EG I +++ ++L +RG+D   V  V N+D P    +Y+HRIGRTGRAGR GKA T  
Sbjct: 435 AFREGKIWILICTELMSRGIDFKGVNLVVNYDFPPSTISYVHRIGRTGRAGRPGKAVTFF 494

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSL--NPPLEKIDIAQHNHARKN-NPIPQKSTGF 406
            K+D  ++ +I +LI+     +   +  +  +    +  +AQ    R     IP      
Sbjct: 495 TKDDTVNLKSIAQLIKSAGGEVPDYMLQMHGSSKKARDTLAQKAPKRAMIRTIPTFELQQ 554

Query: 407 DRRKKNYSSQ 416
            +RKK + S+
Sbjct: 555 LQRKKRFVSK 564


>gi|119572209|gb|EAW51824.1| hCG2039634, isoform CRA_c [Homo sapiens]
          Length = 444

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 58  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 117

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      R P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 118 LSRVEPSD---RYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 174

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 175 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 234

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        L
Sbjct: 235 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 292

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 293 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 352

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 353 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 412

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 413 SMNILNRIQEHFNKKIERLDTD 434


>gi|119572213|gb|EAW51828.1| hCG2043426, isoform CRA_b [Homo sapiens]
          Length = 479

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 93  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 152

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      R P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 153 LSRVEPSD---RYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 209

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 210 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 269

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        L
Sbjct: 270 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 327

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 328 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 387

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 388 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 448 SMNILNRIQEHFNKKIERLDTD 469


>gi|114663478|ref|XP_001170187.1| PREDICTED: hypothetical protein isoform 17 [Pan troglodytes]
          Length = 459

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 73  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 132

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      R P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 133 LSRVEPSD---RYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 189

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 190 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 249

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        L
Sbjct: 250 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 307

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 308 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 367

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 368 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 427

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 428 SMNILNRIQEHFNKKIERLDTD 449


>gi|8922886|ref|NP_060802.1| ATP-dependent RNA helicase DDX19A [Homo sapiens]
 gi|114663472|ref|XP_001170311.1| PREDICTED: hypothetical protein isoform 21 [Pan troglodytes]
 gi|114663474|ref|XP_001170333.1| PREDICTED: hypothetical protein isoform 22 [Pan troglodytes]
 gi|332846345|ref|XP_003339332.1| PREDICTED: ATP-dependent RNA helicase DDX19A isoform 1 [Pan
           troglodytes]
 gi|73919226|sp|Q9NUU7|DD19A_HUMAN RecName: Full=ATP-dependent RNA helicase DDX19A; AltName:
           Full=DDX19-like protein; AltName: Full=DEAD box protein
           19A
 gi|7023599|dbj|BAA92022.1| unnamed protein product [Homo sapiens]
 gi|13477371|gb|AAH05162.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19A [Homo sapiens]
 gi|16306840|gb|AAH06544.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19A [Homo sapiens]
 gi|50949502|emb|CAH10622.1| hypothetical protein [Homo sapiens]
 gi|119572211|gb|EAW51826.1| hCG2039634, isoform CRA_e [Homo sapiens]
 gi|187950671|gb|AAI37498.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19A [Homo sapiens]
 gi|187952631|gb|AAI37497.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19A [Homo sapiens]
 gi|325463431|gb|ADZ15486.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19A [synthetic construct]
          Length = 478

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 92  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 151

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      R P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 152 LSRVEPSD---RYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 208

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 209 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 268

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        L
Sbjct: 269 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 326

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 327 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 386

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 387 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 446

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 447 SMNILNRIQEHFNKKIERLDTD 468


>gi|58269456|ref|XP_571884.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134114169|ref|XP_774332.1| hypothetical protein CNBG3130 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256967|gb|EAL19685.1| hypothetical protein CNBG3130 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57228120|gb|AAW44577.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 615

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 127/392 (32%), Positives = 198/392 (50%), Gaps = 17/392 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD+ +   ++  +   G   PTPIQ++ +P      D+ GIA TG+GKT +F+LP +  
Sbjct: 182 FADMKIPKPILGYLQAKGIKHPTPIQMQGLPTAFSGRDMIGIAFTGSGKTLAFILPAIMA 241

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNF-------EKYGKNYNLTVALLIGGI 110
             +  A+V       P  LI+ P+RELA Q  +         ++ G    L   L IGGI
Sbjct: 242 ALEMEAKVPFVRGEGPVGLIICPSRELARQTYEQCVAMCTVLKESGSYPELRSLLCIGGI 301

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q   L +G  V++ TPGR++D  ++ KL  +N + L +DEADRM+DMGF   +++I
Sbjct: 302 SMADQADVLNKGVHVVVATPGRLIDMLDKRKLNADNCKYLCMDEADRMIDMGFEEDVRSI 361

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S   + RQTLLFSATM  ++Q     F Q      +      A       +       +
Sbjct: 362 MSHFKYQRQTLLFSATMPRKIQD----FAQQSLINPILVNVGRAGAANMDVIQEVEYVKQ 417

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    IIF + K  V ++   L  +G    AIHG+  Q  R   + +
Sbjct: 418 EAKMVYLLECLQKTPPPVIIFSDNKNEVDDIQEYLLLKGIEAVAIHGSKTQEEREYAIRS 477

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   +MVAS +A++GLD  ++ HV  + +P   E+Y+H IGRTGR+G+ G A T V 
Sbjct: 478 FKTGAKDVMVASGVASKGLDFNEIQHVIVYSMPKEIEDYVHEIGRTGRSGKTGLATTFVN 537

Query: 351 KEDIKH-IDAIEKLIEKKVDWLNGDLSSLNPP 381
               +  +  ++ L+ +    +   L S++ P
Sbjct: 538 MNTSEQTLLDLKYLLMEAKQKIPDFLLSIDDP 569


>gi|183396419|gb|ACC62099.1| ATP-dependent RNA helicase DDX18 (predicted) [Rhinolophus
           ferrumequinum]
          Length = 730

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 120/392 (30%), Positives = 200/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP- 58
            FA L   ++   + A+ + G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 238 SFASLSNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPA 297

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  I++           LIL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 298 IELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK 357

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 358 LANGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPIR 417

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T++          S+K  LL  
Sbjct: 418 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLF 477

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +  K+V      L      V AIHG   Q  R      F      
Sbjct: 478 TFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADTG 537

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
           +++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 538 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELG 596

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + ++    +S +   LEK+
Sbjct: 597 FLRYLKQSKVPLSEFEFSWSKISDIQSQLEKL 628


>gi|288555762|ref|YP_003427697.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288546922|gb|ADC50805.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 454

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 126/389 (32%), Positives = 206/389 (52%), Gaps = 18/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    L P ++ A+    +  PT IQ + IP +    DV G +QTGTGKT SF+LP+L 
Sbjct: 5   NFKRFELKPFLIEALSGQRFSLPTEIQERLIPAIKNGKDVIGQSQTGTGKTLSFLLPILD 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADN----FEKYGKNYNLTVALLIGGIPFEAQNK 117
            ++  +  V+     I  PTRELA+Q+ D      E   +   +   LL+GG       +
Sbjct: 65  KIDPAKEEVQAI---ITAPTRELASQLFDELKKLLEHCPEEEMIHAKLLVGGTDRNRAIE 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+    +++ T GRI D  +   LL+    +LV+DEAD+MLDMGFI  +  + S +   
Sbjct: 122 GLKTQPHIVVGTAGRIGDLMDDKALLVYTAAMLVVDEADQMLDMGFIADVDKVASRMAED 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+ ++LQ   + ++ +P+ ++V     TA  IEH  V    +      +   
Sbjct: 182 LQMMIFSATIPEKLQPFLKKYMNDPRHVQVEPKHVTASKIEHRIVPLRNRDKLTFTVELA 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              +       I+F N K+    +  ++++ G +V  +HG +  R R +I+   KE  +Q
Sbjct: 242 KSINPYF---AIVFTNTKEQADEVTAAMQEAGLNVECLHGGLQPRQRKQIMKQVKEVKMQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+D+  V H+ NF +P   + Y+HR+GRT RAG  G A+T+  + D    
Sbjct: 299 YLVATDLAARGIDVKGVTHIINFGLPKDLDFYVHRVGRTARAGADGVAYTIFEQNDQ--- 355

Query: 358 DAIEKLIEKKV-----DWLNGDLSSLNPP 381
            A+EKL+++ +     D+  G+   L+ P
Sbjct: 356 LAVEKLLKRGITFTYYDFKRGEWQKLDKP 384


>gi|242086224|ref|XP_002443537.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
 gi|241944230|gb|EES17375.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
          Length = 618

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 118/373 (31%), Positives = 200/373 (53%), Gaps = 1/373 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++ A LG+S K+V  +   G  K  PIQ   +   +Q  D+ G A+TGTGKT +F +P+L
Sbjct: 98  LEIAKLGISNKIVERLAKKGITKLFPIQRAVLEPAMQGRDMVGRAKTGTGKTLAFGIPIL 157

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + +   + +  +  +                ++  +  L    + GG P   Q ++L 
Sbjct: 158 DAIIRHNEKYKPGKFPLAIVLAPTRELAKQVEREFLDSSPLETLCVYGGTPIMQQIRQLN 217

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV+I TPGR++D   RG L +  I  +V+DEAD+ML +GF   ++ I   VP  RQT
Sbjct: 218 YGVDVVIGTPGRVIDLLKRGALSLAEIRFVVLDEADQMLSVGFDQDVETILERVPPQRQT 277

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSATM   ++K+++ +L +P  +++              ++  ++  +K A+L +L++
Sbjct: 278 LMFSATMPTWIRKLTQKYLNSPVTVDLVGEDDQKLAEGISLLSVSSENRQKPAVLGELIK 337

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K++   L HS   + F   A+HG+I Q  R + L  F++G   +++
Sbjct: 338 EHAKGGKCIVFTQTKRDADRLSHS-MSRSFQCEALHGDISQSQRERTLGGFRDGRFNILI 396

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP+V  V ++++PN +E ++HR GRTGRAG+ G A  +   E  + +  I
Sbjct: 397 ATDVAARGLDIPNVDLVIHYELPNSSEIFVHRSGRTGRAGKKGTAIVMYNYEQSRAVRVI 456

Query: 361 EKLIEKKVDWLNG 373
           E+ +  K   L  
Sbjct: 457 ERDVGCKFTELPK 469


>gi|285017902|ref|YP_003375613.1| ATP-independent RNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283473120|emb|CBA15626.1| probable atp-independent rna helicase protein [Xanthomonas
           albilineans]
          Length = 458

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 189/379 (49%), Gaps = 5/379 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  L LSP +   +   GY   TP+Q +++P +L  HDV   A TG+GKTA+F L +L 
Sbjct: 3   DFDILSLSPALAPGIDALGYTTMTPVQAQSLPPILAGHDVIVQAPTGSGKTAAFGLGLLH 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+    R +                        G      V L  G             
Sbjct: 63  KLDPALVRAQALVLC-PTRELADQVGKQVRKLATGIANMKLVVLTGGMPLAPQLASLEAH 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGRI +   +  L +  +  LV+DEADRMLDMGF   I+ I       RQ+L
Sbjct: 122 DPQVVVGTPGRIQELARKRVLHLGGVRTLVLDEADRMLDMGFEEPIREIAGRCDKHRQSL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + ++ ++   L++P  I V    S  E  +  F    +   K  A L      
Sbjct: 182 LFSATFPETIRALARELLKDPTEITVAGAESAPEIDQQFFEVDPSYRQKAVAGLLL---- 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   ++ ++FCN +K V  +  SL++ GFS  A+HG+++QR R ++L  F   +  ++VA
Sbjct: 238 RFAPESSVVFCNTRKEVDEVASSLQQFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLD+ D+  V N+++P   E Y HRIGRT RAG+HG A +LVA  +++   A+E
Sbjct: 298 SDVAARGLDVEDLAAVLNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRELQRAQALE 357

Query: 362 KLIEKKVDWLNGDLSSLNP 380
                 + W    L++  P
Sbjct: 358 TEQSLPLRWSRAPLATARP 376


>gi|270003649|gb|EFA00097.1| hypothetical protein TcasGA2_TC002912 [Tribolium castaneum]
          Length = 557

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 85/401 (21%), Positives = 159/401 (39%), Gaps = 22/401 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL + P ++  V   GY++PTP+Q + +P++L+  ++   A TG+GKTA+F++P+L 
Sbjct: 116 TFDDLNVDPIIINNVKKCGYIEPTPVQKQAVPIMLEGRNLLACAPTGSGKTAAFLIPILH 175

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+  R        L          Q        GK +++ V   I     +      ++
Sbjct: 176 DLKGPRKEGFRALVLCPTRELAKQTQRECIRLSEGKGFHVHVISKINKALIQYGPNSSQK 235

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++                L       ++ +    L        +     +       
Sbjct: 236 FDILITTPNRVCFLLKQDQAALSLANIKWLVIDEADKLFETGNRGFREQLDQILNACT-- 293

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
                                K  +V   S+T   +   +     +   +  + Q+ L  
Sbjct: 294 --------------------NKEKKVAMFSATYTPMVAKWCVHNMKGLVRITVGQRDLVK 333

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      ++F   K     L + L   G +V AIH +  Q  R   + +F+EG I +++ 
Sbjct: 334 KGLTPPVLVFVQSKDRAQQLFNELIYDGINVDAIHADRTQLQRDNTVRSFREGRIWVLIC 393

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           ++L ARG+D   V  V N+D P  A +Y+HR+GR GRAGR GKA T    E+  ++ +I 
Sbjct: 394 TELMARGIDFKGVNLVINYDFPPSAISYVHRVGRAGRAGRTGKAITFFTVENTVNLRSIA 453

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
            ++++    +   + ++    +K        A K + I  +
Sbjct: 454 YVLKESGCEVPSYMLTMKKTSKKDRKKLEKAAPKRDDIDTR 494


>gi|226246544|ref|NP_001139665.1| vasa protein [Strongylocentrotus purpuratus]
 gi|223056284|gb|ACM80369.1| vasa [Strongylocentrotus purpuratus]
          Length = 766

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 206/386 (53%), Gaps = 13/386 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   V+  V  A Y KPTP+Q   +P++    D+   AQTG+GKTA+F+LP++T 
Sbjct: 315 FEEAELDETVLSNVRKAHYAKPTPVQKYGMPIISCGRDLMACAQTGSGKTAAFLLPIITN 374

Query: 63  LEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +            ++ P  LI+ PTRELA Q+ +   K+ +   +   ++ GG     Q 
Sbjct: 375 MITHGGCISTFNVIQEPLALIVSPTRELAIQIYNEARKFCRGTTIRPVVVYGGTSVSHQM 434

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++ ++G  +L+ TPGR+ D   RG + +  ++ L++DEADRMLDMGF P IQ +      
Sbjct: 435 RECQKGCSILVATPGRMHDFVTRGYIGLGKLKFLILDEADRMLDMGFGPDIQRLIEHPHM 494

Query: 177 T----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                RQTL+FSAT  +E+Q+ +  +L +   + V      A  IE    +      +  
Sbjct: 495 PAKGDRQTLMFSATFPNEVQEKAGEYLNDYLFLTVGRVGGAASDIEQRVFSVGQFDKRDK 554

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            +  ++L+ Q      ++F + K+N   L   L +  F   +IHG+  Q+ R + L +FK
Sbjct: 555 LM--EILRDQKDDDRTLVFVSTKRNADFLASLLSQSEFPTTSIHGDRQQQEREEALRDFK 612

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AK 351
            G   ++VA+ +AARGLDIP V HV N+D+P+  + Y+HRIGRTGR G  G++ +   A+
Sbjct: 613 TGKAPILVATSVAARGLDIPGVKHVVNYDLPSDIDEYVHRIGRTGRVGNLGRSTSFYDAE 672

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSS 377
           +D     A+ K++      +   L  
Sbjct: 673 KDANIARALIKILADAQQEVPEFLEE 698


>gi|260791488|ref|XP_002590761.1| hypothetical protein BRAFLDRAFT_218590 [Branchiostoma floridae]
 gi|229275957|gb|EEN46772.1| hypothetical protein BRAFLDRAFT_218590 [Branchiostoma floridae]
          Length = 372

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 114/363 (31%), Positives = 184/363 (50%), Gaps = 4/363 (1%)

Query: 3   FADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           F+ L   +    +  V D  +   T IQ K+IP +L+  D+   A+TG+GKT +F++P +
Sbjct: 10  FSSLEETVCEPTLKGVADMSFTCMTEIQAKSIPPLLEGRDILAAAKTGSGKTLAFLIPAV 69

Query: 61  TILEKGRARVRMPRTLIL-EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++ K +   R    +I+  PTRELA Q     ++  K +  T  L++GG    ++  KL
Sbjct: 70  ELMYKLKFMPRNGTGVIVLSPTRELAMQTYGVLKELLKYHCHTYGLIMGGTSRSSEADKL 129

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNI-EILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +G ++++ TPGR+LDH       M    + LVIDEADR+L++GF   ++ I  L+P  R
Sbjct: 130 AKGINIVVATPGRLLDHMQNTPQFMFKNLQCLVIDEADRILEVGFEEELKQIVRLLPKRR 189

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT T +++ ++   L+          +    T+E          S+K  LL   
Sbjct: 190 QTMLFSATQTRKIEDLARVSLKREPLYVGVDDNKDQATVEGLEQGYVVCPSEKRFLLLFT 249

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  ++F +   +V      L      V AIHG   Q  R      F       
Sbjct: 250 FLKKNRKKKIMVFFSSCMSVKYHYELLNYIDLPVMAIHGRQKQTKRTTTFFQFCNSDTGT 309

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +D+AARGLDIP V  +  FD P+  + YIHR+GRT RAG  G A  ++  E++  + 
Sbjct: 310 LLCTDVAARGLDIPAVDWIVQFDPPDDPKEYIHRVGRTARAGGRGHALLILRPEELGFLR 369

Query: 359 AIE 361
            ++
Sbjct: 370 YLK 372


>gi|152965134|ref|YP_001360918.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
           SRS30216]
 gi|151359651|gb|ABS02654.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
           SRS30216]
          Length = 565

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 125/371 (33%), Positives = 203/371 (54%), Gaps = 7/371 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+ G+ P++  ++  AG   P PIQ  T+P+ L  HD+ G A+TGTGKT  F +P+L 
Sbjct: 29  TFAEHGVDPRIAQSLAGAGITTPFPIQSMTLPVALSGHDIIGQAKTGTGKTLGFGVPLLQ 88

Query: 62  IL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                             P+ L++ PTRELA QVA +     +NY   +  + GG  +E 
Sbjct: 89  RTAVPGDPAYDALPNPGKPQALVIVPTRELATQVAGDLTTASRNYPARILTVYGGRAYEP 148

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L +G DV++ TPGR+LD   +  L ++N++ +V+DEAD MLD+GF+P ++ + +  
Sbjct: 149 QIDALTKGVDVVVGTPGRLLDLAQQRHLDLSNVKCVVLDEADEMLDLGFLPDVERLIAQT 208

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQT+LFSATM   +  ++ +++  P  I    P+    T+       Y  ++     
Sbjct: 209 DPARQTMLFSATMPGPVVAMARSYMSRPTHIRAVDPTDDGATVAAITQFAYRTHALDKVE 268

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +         I+F   K+   ++   L ++GF+  +IHG++ Q +R + L  F+ G
Sbjct: 269 VLARMLQATGRGLTIVFSRTKRTAASVAEQLTERGFAAASIHGDLGQGAREQALRAFRHG 328

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + ++VA+D+AARG+D+ DV HV N+  P   + Y+HRIGRTGRAG  G A T V  +++
Sbjct: 329 KVDVLVATDVAARGIDVEDVTHVINYQCPEDEKTYLHRIGRTGRAGNTGVAVTFVDWDEL 388

Query: 355 KHIDAIEKLIE 365
                I+K + 
Sbjct: 389 PRWSLIDKALG 399


>gi|86147794|ref|ZP_01066101.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           MED222]
 gi|85834432|gb|EAQ52583.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           MED222]
          Length = 412

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 137/418 (32%), Positives = 209/418 (50%), Gaps = 9/418 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L L+PK V A+    + KPT IQ   IP ++   DV  +AQTG+GKT +F LP+L
Sbjct: 1   MSFDSLTLNPKTVSAIPSQ-FNKPTEIQQAVIPTIIAEKDVLALAQTGSGKTLAFGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     ++     I+ PTRELA+QVA   E      ++    L GG+  E Q ++L 
Sbjct: 60  NSIKHDVNELQAI---IIVPTRELASQVAKALEPIATTLDIKTVTLTGGVDIEIQQQQLL 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGR+       KL +   + L++DEADR+LDMGF P +Q I S +P   QT
Sbjct: 117 EKPQLVIATPGRLHAVIQENKLELTQCKSLILDEADRLLDMGFWPDVQTIISALPKKHQT 176

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL   +E  L NP ++  +  +S    IE            +  +      
Sbjct: 177 LLFSATLPKELISQTEALLVNPVKVTTHQENSVVAAIEETLYLVNKGSKAQALIALLNQH 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       ++F   K N   L   L K   SV A+HGN  Q  R + L +FK G  ++++
Sbjct: 237 AWS---QVLVFIGAKDNADALTKRLSKAKISVNALHGNKSQEEREQALESFKNGKTRVLI 293

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+ I  +  V NFD+P+ +  Y+HR+GRT RAG  G A +LV+  +  +++AI
Sbjct: 294 ATDVMARGIHIDQLPVVINFDLPSHSATYVHRVGRTARAGSTGSAISLVSHSETDYLNAI 353

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
             L  K +  +   L       +    A        + +  + T   +  K + S+ S
Sbjct: 354 RTLTNKPL--MLQALEGFPVTDKPASEATARKRPPKDKMANRRTAKKKSVKQFKSKPS 409


>gi|321257748|ref|XP_003193695.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
 gi|317460165|gb|ADV21908.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
          Length = 790

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 141/491 (28%), Positives = 226/491 (46%), Gaps = 33/491 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + LS  ++ A+    +  PTPIQ + IPL L   D+ G A TG+GKTA+F++P+L 
Sbjct: 205 SFTAMNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPILE 264

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG----KNYNLTVALLIGGIPFEAQNK 117
            L             +L         V               ++  ALL+GG+   AQ  
Sbjct: 265 RLCYRDRGKGGAACRVLVLCPTRELAVQCEAVGKALAEKGGLDVRFALLVGGLSLNAQAH 324

Query: 118 KLERGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            L    D+LI TPGR++DH  N     ++ +++LVIDEADRML+ GF   ++ I    P 
Sbjct: 325 TLRTLPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEAGFTDELEEIIKACPR 384

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           +RQT+LFSATMTD + ++ +  L  P R+ V+   +TA+ +   FV   +  S+  +LL 
Sbjct: 385 SRQTMLFSATMTDSVDELVKLSLDKPIRVFVDPKRNTAKGLTQEFVRIRSDDSRSPSLLA 444

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
              ++       IIF   K     +       G     +HGN+ Q  R++ L++FK  T+
Sbjct: 445 LCKRTIREKC--IIFFRSKALAHQMRIVFGLFGLKAAELHGNLTQEQRLQALNDFKASTV 502

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             ++A+DLA+RGLDI  V  V N+D+P +   Y HR+GRT RAGR G++ +LV + D K 
Sbjct: 503 DYLLATDLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSISLVGEADRKM 562

Query: 357 IDAIEK------------------LIEKKVDWLNGDLSSLNPPLEKIDIAQH---NHARK 395
           + A  K                   +++K++    D+  +    ++  + +       + 
Sbjct: 563 LKAAIKQAEADQVRHRIIPSEAVTAMKEKLEGFKDDIQEILKEEKEEKLLRQADMEIKKG 622

Query: 396 NNPIPQKSTGFDRRKK-----NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMP 450
            N +  ++  F R  +         Q S    K++   S   +D           RG   
Sbjct: 623 QNMVEHEAEIFSRPARTWFQSGKEKQASKNAGKDAYVGSFPSKDKSTETEKEKLKRGKYD 682

Query: 451 AFMLPKNRGKL 461
                  R K+
Sbjct: 683 GLSRRLKRRKM 693


>gi|291001325|ref|XP_002683229.1| ATP-dependent dead box RNA helicase [Naegleria gruberi]
 gi|284096858|gb|EFC50485.1| ATP-dependent dead box RNA helicase [Naegleria gruberi]
          Length = 892

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 117/366 (31%), Positives = 199/366 (54%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA  GLS  ++  +   G+  PTPIQ  +IP++ Q  DV  +A+TG+GKT S++ P+   
Sbjct: 40  FAKFGLSQLLLKQIKRCGFFNPTPIQQSSIPVITQGRDVIAMARTGSGKTVSYLFPLFER 99

Query: 63  LEKGRARVRMPRTLILEPTRE-LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+   + +   R +I+ PTRE +       ++  GK  +L   +L GG   E Q ++L  
Sbjct: 100 LDYKHSSIVGARAVIIVPTRELVLQVNKVIYDFIGKTSDLKTCMLFGGKSMEGQFERLSA 159

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D++I TPGR+L       L +  +E +V DEADR+ +MG    +  I + +P TRQTL
Sbjct: 160 NPDIIIATPGRLLHIILETGLSLKRVEYVVFDEADRLFEMGLSEQLYQIIAKLPTTRQTL 219

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   + + S+  L +P+ I +++    ++ I            K  ALL  L   
Sbjct: 220 LFSATLPSAVAEFSKAGLTSPELIRLDSEVKVSDNI-RLSGLFVRSNEKVAALLYLLNSV 278

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  IIF   + +                 ++G++DQ++RM+ L  F+ G   +++ 
Sbjct: 279 ISHRETTIIFIPTRHHAEYFLTLFTHYKIEATVVYGSMDQQARMENLDKFRNGEANILLV 338

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIPDV +V N++ P + + ++HR+GR GRAG+ G A++L+A +++     +E
Sbjct: 339 TDVAARGIDIPDVNNVINYNFPGKPKLFVHRVGRVGRAGKVGTAYSLIAPDEVPFFLDLE 398

Query: 362 KLIEKK 367
             + +K
Sbjct: 399 LFLGRK 404


>gi|297700670|ref|XP_002827359.1| PREDICTED: probable ATP-dependent RNA helicase DDX52-like [Pongo
           abelii]
          Length = 600

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 113/442 (25%), Positives = 209/442 (47%), Gaps = 29/442 (6%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     ++ +++  +LDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 163 TFQQLDQEYKINSRLLQNILDAGFQIPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 222

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L++   +      LI+ PTRELA+Q+     K  +        +    +  +   
Sbjct: 223 PILMQLKQPANKGFR--ALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFG 280

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++    +    ++  ++E LV+DE+D++ + G   +        
Sbjct: 281 PKSSKKFDILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIF 340

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT   ++++  +  L N   + +   +S  ET+E   +   ++  K
Sbjct: 341 LACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSETGK 400

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +  +     ++F    +    L H L  +G +V  IH    Q+ R   + +
Sbjct: 401 LLAMRELVKKGFNPP--VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHS 458

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   
Sbjct: 459 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFT 518

Query: 351 KEDIKHIDAIEKLIEKK----VDWLNG--------DLSSLNPPLEKIDIAQHNH--ARKN 396
           ++D   + ++  +I++      +++ G            +  PLE+  I+        K 
Sbjct: 519 EDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPKCFLEKA 578

Query: 397 NPIPQKSTGFDRRKKNYSSQKS 418
               +K TG + +KK     KS
Sbjct: 579 KDKQKKVTGHNSKKKVALEDKS 600


>gi|326527477|dbj|BAK08013.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 614

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 114/370 (30%), Positives = 196/370 (52%), Gaps = 1/370 (0%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
           A LG+S ++V  +   G  K  PIQ   +   +Q  D+ G A+TGTGKT +F +P++  +
Sbjct: 108 AKLGISSEIVKRLAAKGITKLFPIQKAVLEPAMQGKDMVGRAKTGTGKTLAFGIPIMDAI 167

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            +     +  R  +               +++  +  L    + GG P + Q + L+ G 
Sbjct: 168 IRHNEINKPGRLPLAICLAPTRELAKQVDKEFVDSSPLQTLCVYGGTPIQQQMRALDYGV 227

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
           DV++ TPGR++D   RG L ++ ++ +V+DEAD+ML +GF   ++ I + VP  RQTL+F
Sbjct: 228 DVVVGTPGRVIDLLKRGALNLSMVQFVVLDEADQMLSVGFDEDVEIILNKVPPKRQTLMF 287

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM   ++K+ + +L++P  +++              ++   +   K A+L QL+Q   
Sbjct: 288 SATMPPWIRKLMQKYLKDPVIVDLVGEDDQKLAEGISLLSIATENHAKPAVLAQLIQDHA 347

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
                I+F   K++   L ++   +     A+HG+I Q  R + L  F+EG    ++A+D
Sbjct: 348 KGGKCIVFTQTKRDADRLSYT-MGRTVQCQALHGDITQGQRERTLQGFREGRFSTLIATD 406

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARGLDIP+V  V ++++PN +E ++HR GRTGRAG+ G A  +      + +  IE  
Sbjct: 407 VAARGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGIAIVMYGYNQSRAVRGIEND 466

Query: 364 IEKKVDWLNG 373
           +  K   L  
Sbjct: 467 VGGKFQELPK 476


>gi|302558562|ref|ZP_07310904.1| ATP-dependent RNA helicase DeaD [Streptomyces griseoflavus Tu4000]
 gi|302476180|gb|EFL39273.1| ATP-dependent RNA helicase DeaD [Streptomyces griseoflavus Tu4000]
          Length = 868

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 132/374 (35%), Positives = 208/374 (55%), Gaps = 10/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+ P+   A+   G + P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L 
Sbjct: 41  TFRELGILPETAEALEAVGIITPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLE 100

Query: 62  ILE----------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
            +           +       P+ L++ PTREL  QV ++    GK  N+ V  + GG  
Sbjct: 101 RVTVPADVEAGRARPEDLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVTAIYGGRA 160

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q + L++G DV++ TPGR+LD   + KL + +++ LV+DEAD MLD+GF+P ++ I 
Sbjct: 161 YEPQVEALKKGVDVVVGTPGRLLDLAGQKKLNLKHVKALVLDEADEMLDLGFLPDVEKII 220

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           + +P  RQT+LFSATM   +  ++  ++  P  I    P     T+ +     Y  ++  
Sbjct: 221 NFLPVKRQTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANTTQFVYRAHNMD 280

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              +   +   D     ++FC  K+   +L   L+++GF+  A+HG++ Q +R + L  F
Sbjct: 281 KPEMVSRILQADGRGLVMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAF 340

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAG  G A TLV  
Sbjct: 341 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGAKGTAITLVDW 400

Query: 352 EDIKHIDAIEKLIE 365
           +DI     I K ++
Sbjct: 401 DDIPRWQLINKALD 414


>gi|67598831|ref|XP_666241.1| DEAD/DEAH box ATP-dependent RNA helicase [Cryptosporidium hominis
           TU502]
 gi|54657199|gb|EAL36013.1| DEAD/DEAH box ATP-dependent RNA helicase [Cryptosporidium hominis]
          Length = 519

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 112/366 (30%), Positives = 180/366 (49%), Gaps = 4/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F    +  ++  A+ + G    T IQ K IP +L   DV G A+TG+GKT +F++P  
Sbjct: 26  VKFESSNICDQLKKALKEMGMETMTEIQAKAIPRILSGKDVLGAAKTGSGKTLAFLIPAA 85

Query: 61  TILEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L       R    +I + PTREL+ Q+ +   +  K    T  L++GG     + +KL
Sbjct: 86  NLLYNVEFLPRNGTGVIVISPTRELSLQIYEVCRELCKYLPQTHGLVMGGANRRTEAEKL 145

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEIL-VIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +G ++L+ TPGR+LDH    K  +    +  VIDEADR+L++GF   +  I  L+P  R
Sbjct: 146 SKGVNILVATPGRLLDHLQNTKQFLFKNLLNLVIDEADRILEIGFEEEMNQIIKLLPKER 205

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT LFSAT T ++             +  +  +S+  T+           + +  LL   
Sbjct: 206 QTSLFSATQTTKVAD-LVRLSLKNPVLVESKNTSSIATVSGLEQGYVIAQANQRFLLLYT 264

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  ++F +   +             +  +IHG   Q SRM+   +F      L
Sbjct: 265 FLKKNRDKKVMVFFSSCMSTKFHEELFNYVDLTCSSIHGKKKQTSRMQTYYDFCSADKGL 324

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP+V  +  +D P+    YIHR+GRT R AG  GKA   +  E+I  +
Sbjct: 325 LLCTDVAARGLDIPNVDWIVQYDPPDDPREYIHRVGRTARGAGGTGKALLFLLPEEIAFL 384

Query: 358 DAIEKL 363
             + K+
Sbjct: 385 QYLRKM 390


>gi|326430393|gb|EGD75963.1| vasa [Salpingoeca sp. ATCC 50818]
          Length = 873

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 143/393 (36%), Positives = 216/393 (54%), Gaps = 3/393 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA  G    ++  +   G+ +PTPIQ + +P V+   DV GIA+TG+GKTA+FV PM+
Sbjct: 294 VSFAYFGFDDVMMQLIQRQGFAQPTPIQAQAVPTVMSGRDVIGIAETGSGKTAAFVWPMI 353

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                +    R   P  ++L PTREL  Q++ N  +Y K+YN+ VA + GG     Q K 
Sbjct: 354 KHILDQPDLKRGDGPIAVLLAPTRELCMQISQNTRRYAKHYNIRVATVYGGGSRYEQVKT 413

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G +V++ TPGR++D        +  +  LV+DEADRM DMGF   + +I +     R
Sbjct: 414 LKDGCEVVVATPGRLIDLIKDKATNLRRVTYLVLDEADRMFDMGFSLQVNSIINHTRPDR 473

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLF+AT   +++K++   L+NP RI V T       IE          SK   L   L
Sbjct: 474 QTLLFTATFKKKVEKLARQALRNPVRIVVGTVGKANTDIEQRVEIMQDTASKWGWLKAHL 533

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ Q    N ++F N+K +   L  S+   GF    IHG+IDQ +R ++LS FK+ T+++
Sbjct: 534 VEMQSAG-NVLVFVNKKADAETLHESMVAAGFQAVVIHGDIDQITRQEVLSKFKKQTVRI 592

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIP V +V NFD     + + HRIGRTGRAG  G A+TL+   +     
Sbjct: 593 LVATDVAARGLDIPSVRNVVNFDAAMSIDTHTHRIGRTGRAGVKGTAWTLLLPTETSFAA 652

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
            + + +E     ++  L  +     +    +H 
Sbjct: 653 QLVESLEAASQRVSDALLHMAEQDPRFRQRRHR 685


>gi|90083495|dbj|BAE90830.1| unnamed protein product [Macaca fascicularis]
          Length = 478

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 177/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 92  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 151

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      R P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 152 LSRVEPAD---RYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 208

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 209 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 268

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  +  P  I++     T +TI+  +V   ++  K        L
Sbjct: 269 MLLFSATFEDSVWKFAQKVVPEPNIIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 326

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 327 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 386

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 387 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 446

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 447 SMNILNRIQEHFNKKIERLDTD 468


>gi|115492529|ref|XP_001210892.1| ATP-dependent RNA helicase DDX18 [Aspergillus terreus NIH2624]
 gi|121742586|sp|Q0CZS8|HAS1_ASPTN RecName: Full=ATP-dependent RNA helicase has1
 gi|114197752|gb|EAU39452.1| ATP-dependent RNA helicase DDX18 [Aspergillus terreus NIH2624]
          Length = 576

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 119/391 (30%), Positives = 198/391 (50%), Gaps = 7/391 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS   + A+   G+   T IQ +TIP  L   D+ G A+TG+GKT +F++P + 
Sbjct: 99  KFDELNLSEPTMKAIRQMGFETMTEIQQRTIPPTLAGRDILGAAKTGSGKTLAFLIPAVE 158

Query: 62  ILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + R     +I+ PTRELA Q+    ++  + ++ T  ++IGG    A+ +KL 
Sbjct: 159 MLSALRFKPRNGTGVIIITPTRELALQIFGVAKELCEFHSQTYGIVIGGANRRAEAEKLN 218

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFI-PYIQNITSLVPFTR 178
           +G ++LI TPGR +    N    +  N ++LV+DEADR LD+GF     Q +  L    R
Sbjct: 219 KGVNLLIATPGRLLDHLQNTQGFVYKNCKVLVLDEADRCLDVGFEAELRQIVKILPSEER 278

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT T +++ ++   L+               T++          + K  LL   
Sbjct: 279 QTLLFSATQTTKVEDLARISLKPGPLYINVDHRKEHATVDGVDQGYIICEADKRFLLLFT 338

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  IIF +    V      L      V A+HG + Q++R +    F   T   
Sbjct: 339 FLKKNLKKKIIIFFSSCNAVKYYADLLNYIDLPVLALHGKLKQQTRTQRFFEFCNATQGT 398

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIKH 356
           ++ +D+AARGLDIP V ++  FD P+  + YIHR+GRT R   G+ G++  L+   ++  
Sbjct: 399 LICTDVAARGLDIPAVDYIIQFDPPDEPKAYIHRVGRTARGTKGKIGRSIMLLQPSEVGF 458

Query: 357 IDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
           ++ +   ++   + ++    +  +   LEK+
Sbjct: 459 LNVLREARVPVVEFEFPQKKIIDIQSQLEKL 489


>gi|16081434|ref|NP_393777.1| DEAD box protein [Thermoplasma acidophilum DSM 1728]
 gi|10639440|emb|CAC11442.1| probable DEAD box protein [Thermoplasma acidophilum]
          Length = 388

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 118/373 (31%), Positives = 199/373 (53%), Gaps = 9/373 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M  F +  +   +   +   G+V  T +Q +TI   L   D+   ++TG+GKTA++++P+
Sbjct: 21  MSKFEECNIKEDLKSDLKRMGFVDMTAVQERTIEPALAGRDLIIRSKTGSGKTAAYLVPI 80

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  +  G    R P  LI+ PTRELA QV    EK G +  +   ++ GG     Q + L
Sbjct: 81  INNISLG----RKPSALIVLPTRELALQVHGVAEKLGHSSRIRSTVIYGGASMSRQIELL 136

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG D+++ TPGRILD   RG L ++ ++  V+DEAD MLDMGFI  I+ + SL+   +Q
Sbjct: 137 DRGTDIIVGTPGRILDLHERGFLNLSAVKYFVLDEADVMLDMGFIDDIKRMMSLLREDKQ 196

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T + SATM +E+  ++ +F+++P+ I V +   T + I H +  +          + Q  
Sbjct: 197 TFILSATMPEEIIDMANDFMRDPETIIVGSDEVTVKEIYHYYAISKRNRK---LHVLQTY 253

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  IIF   K     +C  L   G++   I+G++  +S+ +            +
Sbjct: 254 LKTYGPQKTIIFSRTKVGTKMVCDFLLNMGYNAVMINGDMS-QSQRERAMYLFRNRADYL 312

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+++AARG+DI DV  + NFD+P+  + Y+HR+GRT R G  G+AF++V +     +  
Sbjct: 313 VATNVAARGIDIRDVTDIINFDLPDDPKVYVHRVGRTARLGSEGRAFSIVEEGQRDAVYQ 372

Query: 360 IEKLIEKKVDWLN 372
           IE +    +  + 
Sbjct: 373 IEHMARVSLKQIK 385


>gi|237833961|ref|XP_002366278.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211963942|gb|EEA99137.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|221486500|gb|EEE24761.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
 gi|221508269|gb|EEE33856.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 734

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 122/414 (29%), Positives = 186/414 (44%), Gaps = 41/414 (9%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           + + P ++  V    Y KPTPIQ  +IP +L   D+   AQTG+GKTA+F+ P++  + +
Sbjct: 235 MQIHPLLLQNVSRVNYTKPTPIQKNSIPTILSGRDLMACAQTGSGKTAAFLYPIIARMLQ 294

Query: 66  G----------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                            R     P  L+L PTRELA Q+ +   K+     +    + GG
Sbjct: 295 DGPPPLPQAAAGGGSGYRKPPAYPICLVLSPTRELAMQIYEEARKFQFGTGVRTVAVYGG 354

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
              + Q   L+ G D+ + TPGR++D   R K+ +  ++  V+DEADRMLDMGF+P I+ 
Sbjct: 355 SDVKRQLIDLDGGCDICVATPGRLVDLLERRKVRLGLVQFFVLDEADRMLDMGFLPQIKL 414

Query: 170 ITSLVPFTRQTLLFSATMT---------DELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
           I             +A              + + +  F     R          E   + 
Sbjct: 415 IVESFDLPPSPTPQTAGYPSLGGDSGAGRRVGRQTVMFSATFPREIQMLAKDFLEDYIYL 474

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKN------------GIIFCNQKKNVVNLCHSLEKQ 268
            V      ++      Q       +K              IIF   K+    +   L   
Sbjct: 475 AVGRVGSTNEFIRQRLQYADEDQKLKLLVKLLRETEKGLTIIFVETKRKADMIEDYLVDD 534

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
            F   +IHG+  Q+ R + L  FK     ++VA+D+AARGLDI +V HV NFD+P   ++
Sbjct: 535 DFPAVSIHGDRTQQEREEALRLFKAAKCPILVATDVAARGLDISNVTHVINFDLPTNIDD 594

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPL 382
           Y+HRIGRTGRAG  G A + V + +   +  +  L+E+       D+ S  PPL
Sbjct: 595 YVHRIGRTGRAGNLGLATSFVNESNKPILRDLLNLLEEA----KQDIPSFLPPL 644


>gi|145348205|ref|XP_001418546.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578775|gb|ABO96839.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 546

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 134/392 (34%), Positives = 213/392 (54%), Gaps = 11/392 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + + P V  AV   GY  PTPIQ K IP  L+  DV  +A+TG+GKTA+F++P+L+ 
Sbjct: 87  FESMDILPDVFRAVKRKGYRVPTPIQRKAIPPALEGRDVVAMARTGSGKTAAFLIPVLSK 146

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +    R +IL PTRELA Q     ++  K  +L VA L+GG   EAQ   L   
Sbjct: 147 LRTHSLKAGA-RCVILAPTRELALQTFKFAKELAKFTDLRVAALVGGDSMEAQFADLSNN 205

Query: 123 ADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            DV++ TPGR+L H +  K      +  +V+DEADR+L+MGF   ++ I + V   RQTL
Sbjct: 206 PDVIVATPGRLLHHIDEVKAFTLRTVCHVVLDEADRLLEMGFADQLKQIMNSVADVRQTL 265

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L +     L+ P+ + ++     +  +   F        K  ALL  L + 
Sbjct: 266 LFSATLPSALAEFVRVGLREPEVVRLDAEMKISSDLRMSF-VLMRSDEKVAALLYMLREV 324

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  ++F + + +V  L + LE +G  V +I+G++D  +R   L  F+     ++V 
Sbjct: 325 IPKRQQTVVFASTRHHVEWLQNVLEFEGVKVSSIYGSMDMMARKMALGRFRAKKADVLVV 384

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP + +V N+D P + + ++HR+GR  RAGR G A + + KE++  +  + 
Sbjct: 385 TDVAARGIDIPLLDNVINYDFPAKGKLFVHRVGRVARAGRTGNAHSFLVKEELGFLVDLH 444

Query: 362 KLIEKKVDWLNGDLSSLNPP---LEKIDIAQH 390
             + +K+       +S  PP    E ++IA+ 
Sbjct: 445 LFLGRKIAA-----ASKAPPSSTEEALEIARK 471


>gi|114613145|ref|XP_001145021.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 6 [Pan
           troglodytes]
          Length = 547

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 123/493 (24%), Positives = 211/493 (42%), Gaps = 41/493 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F  +GL P+++ AV D G+ +PT IQ K IPL L+  D+   A+TG+GKTA++ +PM   
Sbjct: 9   FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQ 115
            L     G    +  R L+L PT+ELA Q     ++        V +            +
Sbjct: 69  LLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQR 128

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              +E+   V+      +         L +++E+LV+DEAD +   GF   ++++   +P
Sbjct: 129 AVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q  L SAT  +++Q + E  L NP  +++             F         K  LL
Sbjct: 189 RIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVICETEEDKFLLL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL+        ++F N  +    L   LE+     C ++G +  RSR  I+S F +G 
Sbjct: 249 YALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGF 308

Query: 296 IQLMVASDLA---------------------------ARGLDIPDVGHVFNFDVPNRAEN 328
              ++A+D                             ARG+D   V  V NFD+P   E 
Sbjct: 309 YDCVIATDAEVLGAPVKGKRRGRGPKGDKASDLEAGVARGIDFHHVSAVLNFDLPPTPEA 368

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHR GRT RA   G   T V   +  H+  IE+L+    +     L      +E+I+  
Sbjct: 369 YIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELL--SGENRGPILLPYQFRMEEIEGF 426

Query: 389 QHNHARKNNPIPQKSTGFDR----RKKNYSSQKSHIPLKESEK-ISKLQQDIQENDADSL 443
           ++        + +++    R    +++   S+K     +++ + +  L+ D+  + A   
Sbjct: 427 RYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVK 486

Query: 444 GFRGNMPAFMLPK 456
              G++P +++P 
Sbjct: 487 PHLGHVPDYLVPP 499


>gi|110834781|ref|YP_693640.1| ATP-dependent RNA helicase RhlB [Alcanivorax borkumensis SK2]
 gi|110647892|emb|CAL17368.1| ATP-dependent RNA helicase RhlB [Alcanivorax borkumensis SK2]
          Length = 422

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 140/402 (34%), Positives = 217/402 (53%), Gaps = 11/402 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L   ++  + D+G+   TPIQ + +   L   D  G AQTGTGKTA+F++ ++  
Sbjct: 25  FHDFDLHLDLMHGIADSGFQYCTPIQAEVLEHTLAGADAIGRAQTGTGKTAAFLITVIND 84

Query: 63  LEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L K    V+     PR LI+ PTRELA Q+  +     K  +L V  ++GG+ F  Q ++
Sbjct: 85  LLKHPIDVQRFAGEPRALIVAPTRELAMQIEKDANILTKYTDLQVMSVVGGMNFNRQQER 144

Query: 119 LERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           L+    D+L+ TPGR+LD   R  L ++ +E LV+DEADRMLDMGFIP ++ I  + P  
Sbjct: 145 LQNKLIDILVATPGRLLDFAKRRDLWLDRVEFLVLDEADRMLDMGFIPDVKRIVGMTPKS 204

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT LFSAT  D++  +S  + Q+ + +E+     T +T+E     T      K    
Sbjct: 205 QYRQTQLFSATFNDDVMNLSRRWTQDAEIVEIEPTQVTTDTVEQKVYITNTDDKFKLLYN 264

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                +   M   I+F N++     +C  L+K+G  V  I G++ Q  R K L  F+ G 
Sbjct: 265 L---ITGMNMDKVIVFANRRDITRRVCDRLQKRGLKVSLISGDVPQTQRSKTLERFRAGD 321

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q+++A+D+A RG+ I  V HV N+++P   E+Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 322 LQVLIATDVAGRGIHIDGVSHVVNYNLPEDPEDYVHRIGRTGRAGASGMSISFACEDDAF 381

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
            +  +E  I  K++      + L    E+   A+   A K +
Sbjct: 382 LLPELENAIGMKLE-CEYPPADLLAERERSASAKAPDAEKKD 422


>gi|85001021|ref|XP_955229.1| RNA helicase [Theileria annulata strain Ankara]
 gi|65303375|emb|CAI75753.1| RNA helicase, putative [Theileria annulata]
          Length = 976

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 132/435 (30%), Positives = 214/435 (49%), Gaps = 16/435 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+  GL   ++  +    Y +P PIQ++ IP ++   DV GIA+TG+GKT +F+LP + 
Sbjct: 369 SFSQCGLPDPILKILEKREYERPFPIQMQCIPALMCGRDVIGIAETGSGKTLAFLLPAIR 428

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +           L++ PTREL  Q+++   K+ +   L    + GG     Q   L
Sbjct: 429 HALDQPSLRENDGMIVLVIAPTRELVIQISNESSKFSRAVGLKTLAIYGGAGIGEQLNAL 488

Query: 120 ERGADVLICTPGRILD---HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA+++I TPGR++D           +  +  LV+DEADRM DMGF P I  I   +  
Sbjct: 489 KRGAEIVIGTPGRLIDVLTLSKGKVTNLRRVTFLVLDEADRMFDMGFAPQISAIVGNIRP 548

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT LFSAT    ++ +++  L  P +I V          +           KK   L 
Sbjct: 549 DRQTALFSATFPIMIENLAKKILAKPLQIVVG--QRGKSASQVDQHVLVLNEEKKLLKLL 606

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL       N IIF N +    +L + L   G+    +HG +DQ  R   L++F+EG  
Sbjct: 607 KLLGEWHEHGNIIIFVNTQLESEHLFNDLLAYGYDAGILHGGVDQTDREFTLNDFREGKK 666

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+ +AARG+D+  V  V N+  P+  E+Y+HR+GRTGRAG  G ++T +  E+   
Sbjct: 667 TILIATSIAARGIDVKSVVLVINYAAPDHFEDYVHRVGRTGRAGTIGTSYTFLTPEEASK 726

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              I K ++         L+S   P E + ++Q + A  +  I  +  GF  +   ++  
Sbjct: 727 SHDIIKALK---------LASQEVPKELLQLSQAHLATLDGKIKFRGRGFGGKGFKFTES 777

Query: 417 KSHIPLKESEKISKL 431
           +     +E ++  KL
Sbjct: 778 EQSRQQQERKRAIKL 792


>gi|187926489|ref|YP_001892834.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
 gi|241665976|ref|YP_002984335.1| ATP-dependent RNA helicase DbpA [Ralstonia pickettii 12D]
 gi|187728243|gb|ACD29407.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
 gi|240868003|gb|ACS65663.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
          Length = 465

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 141/405 (34%), Positives = 203/405 (50%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P V+  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F    L +
Sbjct: 10  FSTLALAPAVLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFA---LAL 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L +  AR    + ++L PTRELA QVA    +  +       L +  G P   Q   LE 
Sbjct: 67  LARLDARSFDVQAMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH  RG L +  ++ LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 127 GAHVIVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPADRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K      Q   R                    Y     +       L  
Sbjct: 187 LFSATYPEGIAK----LSQRILRNPKEVKLEERHDDSKIRQRFYEVTDSQRLHAVGQLLK 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FCN K+   +L   L  QG    A+HG ++QR R ++L  F   +  ++VA
Sbjct: 243 HYRPVSTLAFCNTKQQCRDLLDVLRAQGIHALALHGELEQRERDQVLIQFANRSCSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA  +G A +L + +++  +  IE
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADENGWALSLASMDEMGRVGNIE 362

Query: 362 KLIEKKVDWLNGDL------SSLNPPLEKIDIAQHNHARKNNPIP 400
           + + ++V+W   D       + L PP+E + I      RK    P
Sbjct: 363 EAMGREVEWHQLDELDTGNDAPLLPPMETLQIL---GGRKEKIRP 404


>gi|73984192|ref|XP_533327.2| PREDICTED: similar to ATP-dependent RNA helicase DDX18 (DEAD-box
           protein 18) (Myc-regulated DEAD-box protein) (MrDb)
           [Canis familiaris]
          Length = 669

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 120/392 (30%), Positives = 201/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L   ++   + A+ + G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 177 SFASLSSLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPA 236

Query: 60  LTILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K +   R    + IL PTRELA Q     ++    +  T  L++GG    A+ +K
Sbjct: 237 VELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMMYHVHTYGLIMGGSNRSAEAQK 296

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 297 LGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTR 356

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T++          S+K  LL  
Sbjct: 357 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLF 416

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +  K+V      L      V AIHG   Q  R      F      
Sbjct: 417 TFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSG 476

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
           +++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 477 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELG 535

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + ++    +S +   LEK+
Sbjct: 536 FLRYLKQSKVPLSEFEFSWSKISDIQSQLEKL 567


>gi|332025035|gb|EGI65222.1| ATP-dependent RNA helicase DDX54 [Acromyrmex echinatior]
          Length = 776

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 124/370 (33%), Positives = 202/370 (54%), Gaps = 2/370 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + LS  ++  +L  GY  PTPIQ KTIPL L+  D+  +A+TG+GKTA F++P+   
Sbjct: 38  FQSMALSFPILKGILKRGYKIPTPIQRKTIPLALEGRDIVAMARTGSGKTACFLIPLFEK 97

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  +A+    R LIL PTRELA Q     ++ G+   L  A+++GG   + Q   +   
Sbjct: 98  LKVRQAKTGA-RALILSPTRELALQTLKFIKELGRFTGLKSAVILGGDSMDNQFSAIHGN 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR L       L + NIE +V DEADR+ +MGF   IQ I + +P +RQTLL
Sbjct: 157 PDIIVATPGRFLHICVEMDLQLKNIEYIVFDEADRLFEMGFGEQIQEIVNRLPESRQTLL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L   ++  L +P  + ++  S   E +      T     K   LL  L +  
Sbjct: 217 FSATLPKILVDFTKAGLSDPVLLRLDVESKLPEGL-TLSFITCRPEEKLAVLLSLLKRII 275

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF     +V  +   L+K   S   I+ N+D  +R    + F+ G +++++ +
Sbjct: 276 KPDSQIIIFAETMHHVEYIHQILDKADISNTFIYSNLDPSARKINAAKFQIGKVRVLIVT 335

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP +  V NF+ P +++ ++HR+GR  RAGR G A+ +V+ ++  ++  +  
Sbjct: 336 DVAARGIDIPHLDCVINFNFPAKSKLFVHRVGRCARAGRVGTAYNIVSSDEYPYLLDLHL 395

Query: 363 LIEKKVDWLN 372
            + + +  + 
Sbjct: 396 FLGRPLTIVP 405


>gi|330829948|ref|YP_004392900.1| putative ATP-dependent RNA helicase RhlE [Aeromonas veronii B565]
 gi|328805084|gb|AEB50283.1| Putative ATP-dependent RNA helicase RhlE [Aeromonas veronii B565]
          Length = 462

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 164/443 (37%), Positives = 260/443 (58%), Gaps = 18/443 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLSP ++ AV + GY +PTPIQ + IP +L   DV G AQTGTGKTA F LPML
Sbjct: 1   MSFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L     R R      +L PTRELAAQV ++  KY  +      +  GG+  +     +
Sbjct: 61  QRLLANHGRGRRQVRALVLTPTRELAAQVGESIIKYAHHLPFKTLIAYGGVSIKPNLDAI 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D+L+ TPGR+LD   +G L ++ +E+LV+DEADRMLDMGFI  I+ I   +P  RQ
Sbjct: 121 KLGVDILVATPGRLLDLLTQGALTLSQLEVLVLDEADRMLDMGFIVDIRRIMKALPAERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT +++++ ++++ L +P  IEV+  ++ AE +    +    +  ++       +
Sbjct: 181 TLLFSATFSNDIKALADDLLNDPTLIEVDPSNTAAEQVTQRIIQVDRERRREL---LSHM 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K+    L   ++K G +  AIHG+  Q +R + L++F+ G ++++
Sbjct: 238 IGRGNWQRVLVFVRTKQIADRLAQQMQKDGLNTVAIHGDKSQGARNRALADFRSGEVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + +V NF++P  AE+YIHRIGRTGRAGR G+A +LV+++++  + A
Sbjct: 298 VATDIAARGLDIDQLPYVINFELPQMAEDYIHRIGRTGRAGRGGEAISLVSQDELGQLKA 357

Query: 360 IEKLIEK--KVDWLNGDLSSLNPPLEKIDIAQ----------HNHARKNNPIPQKSTGFD 407
           IE LI +   V+ L G   S  P  + +  ++          H +A+ +N   + + G  
Sbjct: 358 IEALIGQSLSVEILEGYEPSGKPSRQTLPGSKPVQNPPRARGHANAKSSNAKGKPAAGKG 417

Query: 408 RRKKNYSSQKSHIPLKESEKISK 430
           + K + S  K   P ++ E + +
Sbjct: 418 KAKGDAS--KKTAPARKREVVGE 438


>gi|289769255|ref|ZP_06528633.1| helicase [Streptomyces lividans TK24]
 gi|289699454|gb|EFD66883.1| helicase [Streptomyces lividans TK24]
          Length = 556

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 133/374 (35%), Positives = 208/374 (55%), Gaps = 10/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+ P+   A+   G + P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L 
Sbjct: 80  TFRSLGILPETAEALEAVGIITPFPIQEMTLPVALSGKDVIGQAKTGTGKTLGFGLPLLE 139

Query: 62  ILEKGRAR----------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
            +                   P+ L++ PTREL  QV ++    GK  N+ V  + GG  
Sbjct: 140 RVTVPADVEAGRAAPESLTDAPQALVVVPTRELCQQVTNDLLTAGKVRNVRVLAIYGGRA 199

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q + L++G DV++ TPGR+LD   + KL + +I+ LV+DEAD MLD+GF+P ++ I 
Sbjct: 200 YEPQVEALKQGVDVIVGTPGRLLDLAGQKKLSLKHIKSLVLDEADEMLDLGFLPDVEKII 259

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +++P  RQT+LFSATM   +  ++  ++  P  I   +P     T+ +     Y  ++  
Sbjct: 260 NMLPARRQTMLFSATMPGAVIGLARRYMSQPTHISATSPDDEGATVANTKQFIYRAHNMD 319

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              +   +   D     ++FC  K+   +L   L+++GF+  A+HG++ Q +R + L  F
Sbjct: 320 KPEMVARILQADGRGLAMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAF 379

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAG  G A TLV  
Sbjct: 380 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLVDW 439

Query: 352 EDIKHIDAIEKLIE 365
           +DI     I K ++
Sbjct: 440 DDIPRWQLINKALD 453


>gi|256785357|ref|ZP_05523788.1| helicase [Streptomyces lividans TK24]
          Length = 513

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 133/374 (35%), Positives = 208/374 (55%), Gaps = 10/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+ P+   A+   G + P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L 
Sbjct: 37  TFRSLGILPETAEALEAVGIITPFPIQEMTLPVALSGKDVIGQAKTGTGKTLGFGLPLLE 96

Query: 62  ILEKGRAR----------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
            +                   P+ L++ PTREL  QV ++    GK  N+ V  + GG  
Sbjct: 97  RVTVPADVEAGRAAPESLTDAPQALVVVPTRELCQQVTNDLLTAGKVRNVRVLAIYGGRA 156

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q + L++G DV++ TPGR+LD   + KL + +I+ LV+DEAD MLD+GF+P ++ I 
Sbjct: 157 YEPQVEALKQGVDVIVGTPGRLLDLAGQKKLSLKHIKSLVLDEADEMLDLGFLPDVEKII 216

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +++P  RQT+LFSATM   +  ++  ++  P  I   +P     T+ +     Y  ++  
Sbjct: 217 NMLPARRQTMLFSATMPGAVIGLARRYMSQPTHISATSPDDEGATVANTKQFIYRAHNMD 276

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              +   +   D     ++FC  K+   +L   L+++GF+  A+HG++ Q +R + L  F
Sbjct: 277 KPEMVARILQADGRGLAMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAF 336

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAG  G A TLV  
Sbjct: 337 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLVDW 396

Query: 352 EDIKHIDAIEKLIE 365
           +DI     I K ++
Sbjct: 397 DDIPRWQLINKALD 410


>gi|239611619|gb|EEQ88606.1| ATP-dependent RNA helicase ded1 [Ajellomyces dermatitidis ER-3]
 gi|327348365|gb|EGE77222.1| ATP-dependent RNA helicase DED1 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 692

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 131/393 (33%), Positives = 205/393 (52%), Gaps = 19/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +L A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 201 FTNPPLHEHLLSNILLARYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQ 260

Query: 63  LEK------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                          GR +   P  LIL PTREL +Q+ D   K+     L   ++ GG 
Sbjct: 261 SLHRRGPEAEATRGLGRQQKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVYGGA 320

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L++G +VL+ TPGR++D   RG++ + +I+ LV+DEADRMLDMGF P I+ I
Sbjct: 321 EMGNQLRQLDQGCNVLVATPGRLVDMMERGRISLAHIQYLVLDEADRMLDMGFEPQIRRI 380

Query: 171 TSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                   + +    +FSAT   ++QK++E FL++   + V    ST+E           
Sbjct: 381 VQGSDMPDKHMRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSEN--ITQRVVEC 438

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           +  K        +   D+    ++F   K+    L   L        AIHG+  QR R +
Sbjct: 439 ESDKDKDSALLDILCTDSTGLTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERER 498

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G   ++VA+ +AARGLDIP+V HV N+D+PN  ++Y+HRIGRTGRAG  G + 
Sbjct: 499 ALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGIST 558

Query: 347 TLVAK-EDIKHIDAIEKLIEKKVDWLNGDLSSL 378
              ++ ++ K   ++  L++     +   L  L
Sbjct: 559 AFFSRSKNFKIARSMVDLLKDANQEVPDFLEKL 591


>gi|227114116|ref|ZP_03827772.1| ATP-dependent RNA helicase DbpA [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 460

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 125/374 (33%), Positives = 206/374 (55%), Gaps = 8/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L  + +  + + GY   TP+Q  T+P VL   DV   A+TG+GKTA+F + +L 
Sbjct: 5   SFSSLALPAEQLSNLNELGYTDMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLD 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            +          + L+L PTRELA QV+    +  +       L + G  P   Q   L 
Sbjct: 65  RIVVSD---FTTQALVLCPTRELADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSLV 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRI DH  +  L ++++++LV+DEADRMLDMGF   I ++ S  P  RQT
Sbjct: 122 HAPHIVVGTPGRIQDHLRKQSLSLDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  +E++++S    + P+R E+      +   +      Y     +   L   + 
Sbjct: 182 LLFSATYPEEIEQISARVQRQPQRFEIADGVEESAIEQR----FYETTKDQRLPLLIAIL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + ++FCN K++  ++  +L+ +G SV A+HG+++QR R ++L  F   + +++V
Sbjct: 238 GHYQPSSCVVFCNTKRDCQSVFDALDMRGISVSALHGDLEQRDRDQVLVRFANRSCRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V NF++    E ++HRIGRTGRAG  G A +L   +++   + I
Sbjct: 298 ATDVAARGLDIKELELVVNFELAFDPEVHVHRIGRTGRAGTKGLAVSLCTPQEMNRANLI 357

Query: 361 EKLIEKKVDWLNGD 374
           E  +  ++ W + D
Sbjct: 358 EDYLGMRIKWTSAD 371


>gi|237798217|ref|ZP_04586678.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021069|gb|EGI01126.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 459

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 201/378 (53%), Gaps = 8/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++ +    L +  G+ F  Q   LE 
Sbjct: 66  I---NPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQTPQRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F     R                    Y    ++       +  
Sbjct: 183 LFSATYPVGIKQLSSKF----MRDPQTVKVEALHADSQIEQIFYEISPEQRLEAVVKVIG 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 239 HFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 299 TDVAARGLDIDALDMVLNVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 358

Query: 362 KLIEKKVDWLNGDLSSLN 379
           +L +  ++W   D  S+ 
Sbjct: 359 ELQKAPLNWQQYDKLSIK 376


>gi|195015576|ref|XP_001984228.1| GH15125 [Drosophila grimshawi]
 gi|193897710|gb|EDV96576.1| GH15125 [Drosophila grimshawi]
          Length = 465

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 97/393 (24%), Positives = 169/393 (43%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  L L P+++  +   G+  P+ IQ   +P +L     ++   +Q+GTGKTA+FVL M
Sbjct: 79  TFEALHLKPELLKGIYAMGFNTPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +   +     P+ L L PT ELA Q  +   + G+                 +N K+
Sbjct: 139 LSRVNVAQ---NHPQVLCLSPTYELAIQTGEVAARMGQFCPDIKLRFAVRGEEVDRNSKI 195

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             R   +      ++ +    +   G       I  ++    Q
Sbjct: 196 TEHILIGTPGKMMDWGIKMRLFDIKKVRVFVLDEADVMIATQGHHDQCIRIHKMLSPQCQ 255

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSAT   E+   +   +  P  I +     + + I+  +V    +  K      Q +
Sbjct: 256 MLFFSATYDKEVMDFARLIVSEPTIIRLMREQESLDNIKQYYVNCKNEDGK--YNAIQNI 313

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               ++   IIFC+ +K    L   +   G SV  + G++    R+ +L  F+ G  +++
Sbjct: 314 YGCISIGQAIIFCHTRKTAAWLAAKMTADGHSVAVLSGDLTVEQRLAVLDRFRSGQEKVL 373

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           + +++ +RG+DI  V  V NFD+P         E Y+HRIGRTGR G+ G A  L+  E 
Sbjct: 374 ITTNVLSRGIDIEQVTIVVNFDLPVDLRGNADCETYLHRIGRTGRFGKSGIAINLIDGEK 433

Query: 354 IKHI-DAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
              +   I++  +K + +LN D +     +EKI
Sbjct: 434 SMTVCRTIKEHFQKDIIYLNTDNAD---DIEKI 463


>gi|219971722|gb|ACL68521.1| vasa-like protein [Pleurodeles waltl]
          Length = 727

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 118/390 (30%), Positives = 199/390 (51%), Gaps = 29/390 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   +   +  AGYVK TP+Q  +IP+VL + D+   AQTG+GKTA+F+LP+L
Sbjct: 309 LTFEEANLPETLTRNISKAGYVKLTPVQKYSIPIVLAKRDLMACAQTGSGKTAAFLLPIL 368

Query: 61  TILEKGRARVR-----MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             + +            P  +I+ PTREL  Q+  +  K+     +   ++ GG      
Sbjct: 369 AHMMRDGVAPHSLDLQEPEAIIVAPTRELINQIFLDARKFAYGTCIKPVVVYGGTQTFHS 428

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----IT 171
            +++ +G ++L  TPGR++D   R K+ +  +  LV+DEADRMLDMGF P ++       
Sbjct: 429 LRQIYQGCNILCATPGRLIDIIKREKIGLTKLRYLVLDEADRMLDMGFGPDMKVLVNSPG 488

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTL+FSAT  + +Q +++ FL++     V      A +     +    Q+ KK
Sbjct: 489 MPSKEDRQTLMFSATFPERIQSLAKEFLKSDYLFVVVGQVGGACSDVEQIIIPVGQHGKK 548

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L++            I+     +  +    + ++      +IHG+  Q+ R + L++F
Sbjct: 549 DKLVE------------ILQGLGIERTMVFVKTKKR-----ASIHGDRLQKEREEALADF 591

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G   ++VA+++AARGLDI +V HV  +D+ +  E Y+HRIGRTGR G  GKA T    
Sbjct: 592 RFGKCNVLVATNVAARGLDIENVQHVIIYDLSDNIEEYVHRIGRTGRCGNVGKAITFFDT 651

Query: 352 EDIKH---IDAIEKLIEKKVDWLNGDLSSL 378
           +D +      ++ K++      +   L  +
Sbjct: 652 DDNEDRTVARSLVKVLSDAQQEVPAWLEEV 681


>gi|169630612|ref|YP_001704261.1| ATP-dependent DEAD-box RNA helicase [Mycobacterium abscessus ATCC
           19977]
 gi|169242579|emb|CAM63607.1| Probable ATP-dependent DEAD-box RNA helicase [Mycobacterium
           abscessus]
          Length = 490

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 150/426 (35%), Positives = 228/426 (53%), Gaps = 16/426 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LG+  ++  A+ +AG   P  IQ  T+PL L   D+ G A+TG GKT +F +P+L 
Sbjct: 7   TFAQLGVRKEIARALREAGIEHPFAIQELTLPLALAGSDLIGQARTGMGKTYAFGVPLLH 66

Query: 62  ILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKN-----YNLTVALLIGGIPFE 113
            +  G         PR L++ PTREL  QV ++  K  K       + TV  + GG P+E
Sbjct: 67  RIATGVEDRPLNGTPRALVVVPTRELCIQVYEDLTKASKYLSAGDRDFTVVSIYGGRPYE 126

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT-- 171
            Q + L  GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+ I   
Sbjct: 127 PQIEALRAGADVVVGTPGRLLDLAQQGHLQLGGLAMLVLDEADEMLDLGFLPDIERILAL 186

Query: 172 -SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQ++LFSATM D +  ++  F+  P  I    P +++           A    
Sbjct: 187 APSADAGRQSMLFSATMPDPIITLARTFMNRPTHIRAEDPQASSVHDSTEQFVYRAHALD 246

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K  L+ ++LQ+       I     K+    +   L ++GF+V A+HG++ Q +R K L++
Sbjct: 247 KIELVSRILQADGRGATMIFT-RTKRTAQKVSDELAERGFAVGAVHGDLGQIAREKALTS 305

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G A TLV 
Sbjct: 306 FRSGQINVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGIAVTLVD 365

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            +DI     I+K +   V   +   S+      +++I     A     I +K +G  +R+
Sbjct: 366 WDDIARWQLIDKALGLGVPEPDETYSTSPHLFTELNI----PADVTGSIGEKFSGGPKRR 421

Query: 411 KNYSSQ 416
           +    +
Sbjct: 422 EPRGER 427


>gi|148706200|gb|EDL38147.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_a
           [Mus musculus]
          Length = 639

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 134/433 (30%), Positives = 220/433 (50%), Gaps = 27/433 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 161 NFSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 220

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 221 QIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 280

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 281 YGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 340

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 341 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 400

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L + L ++ ++  +IHG+  Q+
Sbjct: 401 WVEELDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLENFLFQERYACTSIHGDRSQK 458

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 459 DREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 518

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           G A +   + ++     +  L+ +    +   L S+           +  + +     + 
Sbjct: 519 GLATSFFNERNLNITKDLLDLLVEAKQEVPSWLESMAYEHH------YKGSSRGRSKSRF 572

Query: 403 STGFDRRKKNYSS 415
           S GF  R    SS
Sbjct: 573 SGGFGARDYRQSS 585


>gi|115958772|ref|XP_001180014.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           [Strongylocentrotus purpuratus]
          Length = 785

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 131/393 (33%), Positives = 207/393 (52%), Gaps = 34/393 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + + GL   +   + + GY  P+PIQ + IP+ LQ  DV G+A+TG+GKTA+F++P+L  
Sbjct: 358 WDEYGLPKHITDIIAEVGYKDPSPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLIPLLVW 417

Query: 63  ------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                 +E+   + + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q 
Sbjct: 418 ISTLPKIERDEDKDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVTIIGGISREDQG 477

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--- 173
            KL  G +++I TPGR++D      L++     +V+DEADRM+DMGF P +Q I      
Sbjct: 478 FKLRLGCEIVIATPGRLIDVLENRYLVLCQCTYVVLDEADRMIDMGFEPDVQKILEYLPV 537

Query: 174 ----------------------VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
                                     RQT++F+ATM   +++V+ ++L+ P  + + +  
Sbjct: 538 TNQKPDSEEAEDSAKLLANFASKKKYRQTVMFTATMPTAVERVARSYLRRPAVVYIGSIG 597

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
              E+++     T  Q  ++  +          +   +IF NQKK V  L   LEK GF+
Sbjct: 598 KPVESVQQLVYMTSNQEKRQKLIQLLEKGIDPPV---LIFVNQKKRVDALAKRLEKMGFN 654

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
              +HG   Q  R   L++ K G   ++VA+D+A RG+DI DV  V NFD+    E+Y H
Sbjct: 655 ATTLHGGKSQEQREYALASLKAGLKDILVATDVAGRGIDIKDVSVVINFDMAKNIEDYTH 714

Query: 332 RIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           RIGRTGRAG+ G A + +  +D      ++ ++
Sbjct: 715 RIGRTGRAGKTGTAVSFLTPDDSAIFYDLKNVL 747


>gi|74181660|dbj|BAE32549.1| unnamed protein product [Mus musculus]
          Length = 658

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 134/433 (30%), Positives = 220/433 (50%), Gaps = 27/433 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 180 NFSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 239

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 240 QIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 299

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 300 YGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 359

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 360 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 419

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L + L ++ ++  +IHG+  Q+
Sbjct: 420 WVEELDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLENFLFQERYACTSIHGDRSQK 477

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 478 DREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 537

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           G A +   + ++     +  L+ +    +   L S+           +  + +     + 
Sbjct: 538 GLATSFFNERNLNITKDLLDLLVEAKQEVPSWLESMAYEHH------YKGSSRGRSKSRF 591

Query: 403 STGFDRRKKNYSS 415
           S GF  R    SS
Sbjct: 592 SGGFGARDYRQSS 604


>gi|25141235|ref|NP_036138.1| ATP-dependent RNA helicase DDX3Y [Mus musculus]
 gi|73620958|sp|Q62095|DDX3Y_MOUSE RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName:
           Full=D1Pas1-related sequence 1; AltName: Full=DEAD box
           protein 3, Y-chromosomal; AltName: Full=DEAD-box RNA
           helicase DEAD2; Short=mDEAD2
 gi|3790186|emb|CAA07483.1| DBY protein [Mus musculus]
 gi|18204785|gb|AAH21453.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [Mus musculus]
 gi|148706201|gb|EDL38148.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_b
           [Mus musculus]
          Length = 658

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 134/433 (30%), Positives = 220/433 (50%), Gaps = 27/433 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 180 NFSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 239

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 240 QIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 299

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 300 YGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 359

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 360 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 419

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L + L ++ ++  +IHG+  Q+
Sbjct: 420 WVEELDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLENFLFQERYACTSIHGDRSQK 477

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 478 DREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 537

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           G A +   + ++     +  L+ +    +   L S+           +  + +     + 
Sbjct: 538 GLATSFFNERNLNITKDLLDLLVEAKQEVPSWLESMAYEHH------YKGSSRGRSKSRF 591

Query: 403 STGFDRRKKNYSS 415
           S GF  R    SS
Sbjct: 592 SGGFGARDYRQSS 604


>gi|227937255|gb|ACP43273.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Gorilla gorilla]
          Length = 660

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 138/429 (32%), Positives = 219/429 (51%), Gaps = 30/429 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D+ +   ++  +    Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+
Sbjct: 179 NFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILS 238

Query: 62  ILEKGRA---------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
            +                    R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 239 QIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 298

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 299 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 358

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 359 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 418

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 419 WVEDLDKRSFLLDLLGATGRDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 476

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 477 DREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNL 536

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH--ARKNNPIP 400
           G A +   ++++     +       +D L      +   LE +    H    +R  +   
Sbjct: 537 GLATSFFNEKNMNITKDL-------LDLLVEAKQEVPSWLENMAYEHHYKGGSRGRSKSN 589

Query: 401 QKSTGFDRR 409
           + S GF  R
Sbjct: 590 RFSGGFGAR 598


>gi|195434729|ref|XP_002065355.1| GK14711 [Drosophila willistoni]
 gi|194161440|gb|EDW76341.1| GK14711 [Drosophila willistoni]
          Length = 425

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F + +L 
Sbjct: 53  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATFSIAILQ 112

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 113 QIDTTSRE---CQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 169

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L   +I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 170 GCHVVVGTPGRVYDMINRKVLRTQSIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 229

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F++ P  I V     T E I+  +V    +  K   L       
Sbjct: 230 LLSATMPHDVLEVSRCFMREPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDL--YD 287

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 288 TLSITQSVIFCNTRRKVDQLTQEMSNHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 347

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  ED + +  IE
Sbjct: 348 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDEDRRILKDIE 407

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 408 QFYHTTIEEMPANIADL 424


>gi|322700332|gb|EFY92088.1| ATP-dependent RNA helicase DBP4 [Metarhizium acridum CQMa 102]
          Length = 796

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 119/455 (26%), Positives = 214/455 (47%), Gaps = 26/455 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F+DL LS   +  +  + +   T +Q + IPL L+ +DV G A+TG+GKT +F++P + 
Sbjct: 51  TFSDLPLSQPTITGLKASHFQTLTEVQQQAIPLALKGNDVLGAAKTGSGKTLAFLIPVLE 110

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +             LI+ PTRELA Q+ +   K G+ +  +  L+IGG   + + ++L 
Sbjct: 111 KLYRAQWTEFDGLGALIISPTRELAVQIFEVLRKIGRYHVFSAGLVIGGKNLKEEAERLA 170

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +        L  NN++ILV+DEADR++DMGF   +  +   +P +RQT
Sbjct: 171 RMNILVCTPGRMLQHLDQTAGLDANNLQILVLDEADRIMDMGFQSAVDALVEHLPKSRQT 230

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT + ++  ++   L+ P+ + V+  +++A               +K         
Sbjct: 231 LMFSATQSKKVSDLARLSLKEPEYVSVHEAATSATPTNLQQHYITTPLPEKL-DTLYGFL 289

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQL 298
             +     I+F +  K V  +  S       +    +HG   Q +R++I S F       
Sbjct: 290 KSNLKSKIIVFLSSGKQVRFVYESFRHLQPGIPLLHLHGRQRQVARLEITSRFTAAKHSC 349

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+ ARG+D P V  V   D P   + YIHR+GRT R   +G+A   +   +   + 
Sbjct: 350 LFATDVVARGIDFPAVDWVIQVDCPEDVDTYIHRVGRTARYQSNGRAVLFLDPSEEPGM- 408

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +++L +KK+            P++K+++ +       N +  ++  F      Y  QK+
Sbjct: 409 -VKRLEQKKI------------PIQKVNVKEKKKKSIKNDL--QNMCFQNPDLKYLGQKA 453

Query: 419 HIP------LKESEKISKLQQDIQENDADSLGFRG 447
            I       L+  +++ KL +   +  A +LG  G
Sbjct: 454 FISYARAIHLQRDKEVFKLDKLDLDAFASALGLPG 488


>gi|254787436|ref|YP_003074865.1| ATP-independent RNA helicase DbpA [Teredinibacter turnerae T7901]
 gi|237683460|gb|ACR10724.1| ATP-independent RNA helicase DbpA [Teredinibacter turnerae T7901]
          Length = 461

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 142/383 (37%), Positives = 216/383 (56%), Gaps = 8/383 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L P ++  + D GY   TPIQ   +P +LQ  DV G A+TG+GKTA+F L +L 
Sbjct: 6   QFSSLNLKPALLSNLSDLGYNTMTPIQAAALPAILQGSDVLGKAKTGSGKTATFGLGLLQ 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            LE  R RV+    L+L PTRELA QVA    K  ++ +    L +  G  F  Q   LE
Sbjct: 66  RLEVERFRVQ---ALVLCPTRELADQVAAELRKLARSIHNIKILTLCGGAAFGPQVGSLE 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ DH  +G L + +++ LV+DEADRMLDMGF   +  I  L P  RQT
Sbjct: 123 HGAHIIVGTPGRVHDHLRKGNLQLGDLQTLVLDEADRMLDMGFAETLDAILDLAPKQRQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + ++ +++    NP+ IEV    S  +  +  +       ++   LL Q   
Sbjct: 183 LLFSATYPEAIESMAKRVQHNPQVIEVEAVHSDHDIEQMFYKVPLENRTQVLGLLLQKYL 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +  M    +FCN K+   ++  +L +QGFS  A+HG++ Q+ R + L  F   +  +MV
Sbjct: 243 PESCM----VFCNTKRETQDVADALLQQGFSAVALHGDMIQKDRDRTLVLFANQSASVMV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI +V  V N+ +    E ++HRIGRTGRAG+ G+A +++ + +   ++ I
Sbjct: 299 ATDVAARGLDIAEVDLVVNYQLSRDPEVHVHRIGRTGRAGKRGRAVSMLNENEKFKVELI 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
               +   +  N  ++ L  P +
Sbjct: 359 CADSDASPELKNPPVNRLQTPQK 381


>gi|114773657|ref|ZP_01450692.1| Superfamily II DNA and RNA helicase [alpha proteobacterium
           HTCC2255]
 gi|114546127|gb|EAU49044.1| Superfamily II DNA and RNA helicase [alpha proteobacterium
           HTCC2255]
          Length = 457

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 129/361 (35%), Positives = 205/361 (56%), Gaps = 8/361 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DFA   L P+++ +V + GY   T IQ  T+P+VL+  DV   A+TG+GKTA+F L +L 
Sbjct: 3   DFAAQNLRPELLQSVEELGYTHLTDIQAATLPVVLKGEDVLAQAKTGSGKTAAFGLGILQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L+  R        L+L PTRELA QVA+      +  +   +  L GG+P   Q   L+
Sbjct: 63  SLDATR---TYTHALVLCPTRELADQVAEQLRLLARRMDNVKITTLYGGVPMNGQIATLK 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR++DH  + ++ +  ++  V+DEADRMLDMGF   ++ I   +P  RQT
Sbjct: 120 HRPHIIVGTPGRVMDHLMKHRVHLKELQQFVLDEADRMLDMGFYDELEVIFQHLPQKRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D + ++S+   + P+RIE  +  +  +  +  +  T     +  A +     
Sbjct: 180 LLFSATYPDTIAQISDAVQKAPQRIETQSLHTGTKIEQIAYKVTDEHRDQAVAAVL---- 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S    +  I+FC+ K     L   L+++  +  A++G+++QR R ++L+ F   +  ++V
Sbjct: 236 SHYQAQAAIVFCHTKAQTFALTEYLQQKDIAAVALNGDLEQRERTQVLTRFAHKSALVLV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V  V N+ V    + Y+HRIGRTGRA   G A TLV++ ++  + AI
Sbjct: 296 ATDVAARGLDIDAVDVVINYTVTEEPDVYVHRIGRTGRADAEGLAVTLVSESEMAGLRAI 355

Query: 361 E 361
           E
Sbjct: 356 E 356


>gi|90409933|ref|ZP_01217950.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90329286|gb|EAS45543.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 462

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 142/430 (33%), Positives = 231/430 (53%), Gaps = 21/430 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGL   ++  + +  Y +PTPIQ + IP VL   D+   A TG+GKTA+F LP+L 
Sbjct: 42  NFTELGLISPLLARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPILQ 101

Query: 62  ILEKGRA-------RVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPF 112
            L + +        +      LIL PTRELA QVAD+ + Y  ++N  +    + GG+  
Sbjct: 102 HLFQQQHANKPLSSKGNYVTGLILVPTRELAKQVADSIKSYAVHFNGAIKTVAVFGGVSA 161

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q   L  G D+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  +  
Sbjct: 162 NTQMLALRGGTDILVATPGRLLDLISSNAIKLDRVKTLVLDEADRMLSLGFTDELSALLD 221

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L+P  +QTLLFSAT  +++Q +++  L +P  I++ +  ++        V    + +   
Sbjct: 222 LLPKNKQTLLFSATFPEQVQALTQELLNDPVEIQLQSADASTLVQRVFTVNKGEKTALLA 281

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L++Q        +  +IF N K +  +L   L K+G +    HG+  Q +R ++L  FK
Sbjct: 282 HLIKQHEW-----RQALIFVNAKNSCEHLADKLSKRGITAEVFHGDKGQGARTRVLEAFK 336

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G I++++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G A +L+  +
Sbjct: 337 SGEIEVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHD 396

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           D  H   IEK  + +++    +    +   E   IA       N P+ +      +++KN
Sbjct: 397 DYHHFKVIEKKNKIRLEREQVEGFEADEVNEAFLIA-------NKPMAKPEGSGKKKRKN 449

Query: 413 YSSQKSHIPL 422
            +S    I L
Sbjct: 450 KASLNEDIWL 459


>gi|317128337|ref|YP_004094619.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315473285|gb|ADU29888.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 442

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 132/447 (29%), Positives = 221/447 (49%), Gaps = 22/447 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    L P ++  ++      PT IQ + IP +    DV G +QTGTGKT +F+LP+L 
Sbjct: 7   NFERFELKPFLIEGLIAQNISLPTEIQERLIPAIKNGSDVIGQSQTGTGKTYAFLLPILD 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV--ALLIGGIPFEAQNKKL 119
            + +     +     I  PTRELA+Q+     K   +   T+   L++GG       +KL
Sbjct: 67  QINEDENETQAV---ITAPTRELASQLYYELNKLTSHAEKTIESQLVVGGTDRLRMMEKL 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    V++ TPGR+ D  ++  L +  + +LV+DEAD+MLDMGFI  +    S +    Q
Sbjct: 124 KNKPHVIVGTPGRVADMIDKQALNVREVNVLVVDEADQMLDMGFIEEVDRAASRMGDDLQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+ ++L+     +++NPK +EV     + + I+H  +    +  K+  +     
Sbjct: 184 MLVFSATIPEKLKPFLRKYMKNPKHVEVQPKDVSPKKIKHWLIPDRDRDRKEIIVDV--- 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      +IF N+K+    +   L  QG +V  +HG I  R R K++   ++  IQ +
Sbjct: 241 SKKLNPYLAVIFTNKKETADEVYEELLNQGLNVDIMHGGISPRQRKKVMKKLQDAEIQFL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DL ARG+D+  + H+ NF++P   E YIHR+GRT RAG  G A T+  + + + I  
Sbjct: 301 VATDLVARGIDVEGISHIINFEIPTELEYYIHRVGRTARAGWDGIAVTIYGRNEQQSISK 360

Query: 360 IEKL-IE------KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           +EK  I       KK +W++ D  S  P +        + ++     P+  T    + K+
Sbjct: 361 LEKQGIRFQYRELKKGEWVDIDKRS-RPQM------AESPSQGTKKAPKTGTKAKAKPKS 413

Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439
                      +  +  K Q+ I+   
Sbjct: 414 VKPGYKKKARYKKAQEEKRQRRIESKR 440


>gi|268593262|ref|ZP_06127483.1| ATP-dependent RNA helicase SrmB [Providencia rettgeri DSM 1131]
 gi|291311158|gb|EFE51611.1| ATP-dependent RNA helicase SrmB [Providencia rettgeri DSM 1131]
          Length = 445

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 141/404 (34%), Positives = 215/404 (53%), Gaps = 11/404 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F +L L   ++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP + 
Sbjct: 5   TFTELELDESLIDALSDKGYQRPTAIQAAAIPAAMDGRDVLGSAPTGTGKTAAFLLPAIQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR L++ PTRELA QVAD  ++   + +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRVLVVTPTRELAMQVADQAKELCAHNHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +EIL++DEADRMLDMGF   I+ I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVEILILDEADRMLDMGFANDIETIAGETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT   + ++  +E  L++P  I+ +      + I+           K   L    L
Sbjct: 185 MLFSATLEGEAIRDFAERLLEDPIEIDADPSRRERKKIQQFHYRADTLEHKTALLC--HL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             QD +   I+F  +++ +  L   L + G   C + G + Q  R + +    +G ++++
Sbjct: 243 LKQDEVTKAIVFVRKRERLRELVQWLREAGIEPCYLEGEMPQAKRNEAVRRLVDGQVKVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI +V HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDVASRGLDIENVSHVFNFDLPRTADVYLHRIGRTGRAGRKGTAISLVEAHDFPLLGK 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           I + IE+ +     D  SL P          + A  N P P K 
Sbjct: 363 ITRYIEEPIKIRVVD--SLRP-----TTKAPSEAMLNKPKPSKK 399


>gi|114613149|ref|XP_001144784.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 isoform 4 [Pan
           troglodytes]
          Length = 539

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 118/487 (24%), Positives = 206/487 (42%), Gaps = 37/487 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL P+++ AV D G+ +PT IQ K IPL L+  D+   A+TG+GKTA++ +PML +
Sbjct: 9   FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNKKLER 121
           L     +      L+        AQ            ++ VA +         +   +E+
Sbjct: 69  LL--HRKAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEK 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+      +         L +++E+LV+DEAD +   GF   ++++   +P   Q  
Sbjct: 127 PDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAF 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SAT  +++Q + E  L NP  +++             F         K  LL  LL+ 
Sbjct: 187 LMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVICETEEDKFLLLYALLKL 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F N  +    L   LE+     C ++G +  RSR  I+S F +G    ++A
Sbjct: 247 SLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIA 306

Query: 302 SDLA---------------------------ARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +D                             ARG+D   V  V NFD+P   E YIHR G
Sbjct: 307 TDAEVLGAPVKGKRRGRGPKGDKASDLEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAG 366

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           RT RA   G   T V   +  H+  IE+L+    +     L      +E+I+  ++    
Sbjct: 367 RTARANNPGIVLTFVLPTEQFHLGKIEELL--SGENRGPILLPYQFRMEEIEGFRYRCRD 424

Query: 395 KNNPIPQKSTGFDR----RKKNYSSQKSHIPLKESEK-ISKLQQDIQENDADSLGFRGNM 449
               + +++    R    +++   S+K     +++ + +  L+ D+  + A      G++
Sbjct: 425 AMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHV 484

Query: 450 PAFMLPK 456
           P +++P 
Sbjct: 485 PDYLVPP 491


>gi|9506931|ref|NP_061955.1| probable ATP-dependent RNA helicase DDX56 [Homo sapiens]
 gi|20139238|sp|Q9NY93|DDX56_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX56; AltName:
           Full=ATP-dependent 61 kDa nucleolar RNA helicase;
           AltName: Full=DEAD box protein 21; AltName: Full=DEAD
           box protein 56
 gi|11527084|gb|AAG36876.1|AF247666_1 DEAD-box RNA helicase [Homo sapiens]
 gi|7576252|emb|CAB87992.1| nucleolar RNA-helicase [Homo sapiens]
 gi|12052922|emb|CAB66635.1| hypothetical protein [Homo sapiens]
 gi|12654785|gb|AAH01235.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Homo sapiens]
 gi|51094496|gb|EAL23752.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Homo sapiens]
 gi|119581498|gb|EAW61094.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56, isoform CRA_b [Homo
           sapiens]
 gi|123980624|gb|ABM82141.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [synthetic construct]
 gi|123995445|gb|ABM85324.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [synthetic construct]
 gi|168277808|dbj|BAG10882.1| ATP-dependent RNA helicase DDX56 [synthetic construct]
          Length = 547

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 121/493 (24%), Positives = 206/493 (41%), Gaps = 41/493 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F  +GL P+++ AV D G+ +PT IQ K IPL L+  D+   A+TG+GKTA++ +PM   
Sbjct: 9   FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQ 115
            L     G    +  R L+L PT+ELA Q     ++        V +            +
Sbjct: 69  LLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQR 128

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              +E+   V+      +         L +++E+LV+DEAD +   GF   ++++   +P
Sbjct: 129 AVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q  L SAT  +++Q + E  L NP  +++             F         K  LL
Sbjct: 189 RIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL+        ++F N  +    L   LE+     C ++G +  RSR  I+S F +G 
Sbjct: 249 YALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGF 308

Query: 296 IQL---------------------------MVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
                                                ARG+D   V  V NFD+P   E 
Sbjct: 309 YDCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEA 368

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHR GRT RA   G   T V   +  H+  IE+L+    +     L      +E+I+  
Sbjct: 369 YIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELL--SGENRGPILLPYQFRMEEIEGF 426

Query: 389 QHNHARKNNPIPQKSTGFDR----RKKNYSSQKSHIPLKESEK-ISKLQQDIQENDADSL 443
           ++        + +++    R    +++   S+K     +++ + +  L+ D+  + A   
Sbjct: 427 RYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVK 486

Query: 444 GFRGNMPAFMLPK 456
              G++P +++P 
Sbjct: 487 PHLGHVPDYLVPP 499


>gi|294933513|ref|XP_002780743.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
 gi|239890799|gb|EER12538.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
          Length = 634

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 122/397 (30%), Positives = 182/397 (45%), Gaps = 23/397 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+     V+ A+   G  +PT IQ++ +P  L   D+ GIA TG+GKT  F +P + 
Sbjct: 189 SFKDMLFPQGVLEALKSKGISRPTQIQMQGLPEALLGRDLIGIAFTGSGKTLVFAIPAIL 248

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL-------------TV 103
              +   R  +     P  L++ P+RELA Q  +  E Y                     
Sbjct: 249 RAMEMEMRAPVADSEGPFCLLIAPSRELAQQTHEVVEYYASYLTGRPSSRSRHRLPRLRC 308

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163
            L IGG     Q   + RG  ++  TPGR+    N     +     + +DEADRM+D+GF
Sbjct: 309 QLCIGGESLGRQAANVRRGVHIVTATPGRLNHMLNEKMFTLAQCVYICLDEADRMVDLGF 368

Query: 164 IPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
              ++N        RQTLLFSATM  ++Q+    F  +     V      A       V 
Sbjct: 369 EDEVRNTLDHFGHQRQTLLFSATMPRKIQE----FATSALVNPVTINVGRAGAANLDVVQ 424

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
                  +  L   L   Q T    ++FC+ K +   +   L  +G   CAIHG ++Q  
Sbjct: 425 EVEYVKAESKLTYLLQCLQKTAPPVMVFCSDKASCDEVLEYLLLKGVGACAIHGGLEQSE 484

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R K    FK G   +++ +D+A++GLD P + HV N+D+P   ENY+HRIGRTGR GR G
Sbjct: 485 RHKSTRLFKSGAKDVLIGTDVASKGLDFPAIQHVINYDMPKEIENYVHRIGRTGRCGRTG 544

Query: 344 KAFTLVAKE-DIKHIDAIEKLIEKKVDWLNGDLSSLN 379
            A T + K  D   +  ++ ++E+    +   L  L 
Sbjct: 545 VATTFINKSVDETVLLDLKAILEEAGQRVPPFLEHLE 581


>gi|2580554|gb|AAC51831.1| dead box, Y isoform [Homo sapiens]
 gi|2580556|gb|AAC51832.1| dead box, Y isoform [Homo sapiens]
          Length = 660

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 137/429 (31%), Positives = 218/429 (50%), Gaps = 30/429 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D+ +   ++  +    Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+
Sbjct: 179 NFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLVACAQTGSGKTAAFLLPILS 238

Query: 62  ILEKGRA---------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
            +                    R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 239 QIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 298

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 299 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 358

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 359 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 418

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +       +L +  +    ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 419 WVEDLDKRSFL--LDILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 476

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 477 DREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNL 536

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH--ARKNNPIP 400
           G A +   ++++     +       +D L      +   LE +    H    +R  +   
Sbjct: 537 GLATSFFNEKNMNITKDL-------LDLLVEAKQEVPSWLENMAYEHHYKGGSRGRSKSN 589

Query: 401 QKSTGFDRR 409
           + S GF  R
Sbjct: 590 RFSGGFGAR 598


>gi|260598959|ref|YP_003211530.1| ATP-dependent RNA helicase SrmB [Cronobacter turicensis z3032]
 gi|260218136|emb|CBA32943.1| ATP-dependent RNA helicase srmB [Cronobacter turicensis z3032]
          Length = 444

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 133/396 (33%), Positives = 207/396 (52%), Gaps = 6/396 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F++L L   ++ A+ + G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP + 
Sbjct: 5   TFSELELDDSLLDALQEKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVA++  +  K+ +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVAEHARELAKHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   I+ I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT   D ++  +E  L+ P  +     +   + I   +        K        L
Sbjct: 185 LLFSATLEGDAIKDFAERLLEEPVEVSATPSTRERKKIHQWYYRADNIEHKTAL--LVHL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q      I+F  +++ V  L + L + G + C + G + Q  R + +    +G + ++
Sbjct: 243 LKQPEATRSIVFVRKRERVHELANQLRQAGINNCYLEGEMVQVKRNEAIKRLTDGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DIPDV HV NFD+P  A+ Y+HRIGRT RAGR G A +LV   D   +  
Sbjct: 303 IATDVAARGIDIPDVSHVINFDMPRTADTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362

Query: 360 IEKLIEKKVDWLNGDL--SSLNPPLEKIDIAQHNHA 393
           + + + + +     D    S   P EK+       A
Sbjct: 363 VGRYLNEPLKARVIDELRPSTRAPSEKLTGKPSKKA 398


>gi|261204854|ref|XP_002627164.1| ATP-dependent RNA helicase ded1 [Ajellomyces dermatitidis SLH14081]
 gi|239592223|gb|EEQ74804.1| ATP-dependent RNA helicase ded1 [Ajellomyces dermatitidis SLH14081]
          Length = 692

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 130/393 (33%), Positives = 205/393 (52%), Gaps = 19/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  +L A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 201 FTNPPLHEHLLSNILLARYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQ 260

Query: 63  LEK------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                          GR +   P  LIL PTREL +Q+ +   K+     L   ++ GG 
Sbjct: 261 SLHRRGPEAEATRGLGRQQKAYPTALILGPTRELVSQIYEEARKFCYRTALHPRVVYGGA 320

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L++G +VL+ TPGR++D   RG++ + +I+ LV+DEADRMLDMGF P I+ I
Sbjct: 321 EMGNQLRQLDQGCNVLVATPGRLVDMMERGRISLAHIQYLVLDEADRMLDMGFEPQIRRI 380

Query: 171 TSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                   + +    +FSAT   ++QK++E FL++   + V    ST+E           
Sbjct: 381 VQGSDMPDKHMRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSEN--ITQRVVEC 438

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           +  K        +   D+    ++F   K+    L   L        AIHG+  QR R +
Sbjct: 439 ESDKDKDSALLDILCTDSTGLTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERER 498

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G   ++VA+ +AARGLDIP+V HV N+D+PN  ++Y+HRIGRTGRAG  G + 
Sbjct: 499 ALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGIST 558

Query: 347 TLVAK-EDIKHIDAIEKLIEKKVDWLNGDLSSL 378
              ++ ++ K   ++  L++     +   L  L
Sbjct: 559 AFFSRSKNFKIARSMVDLLKDANQEVPDFLEKL 591


>gi|168009407|ref|XP_001757397.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691520|gb|EDQ77882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 482

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 127/392 (32%), Positives = 203/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F   G+ P V+      G+ KP+PIQ    P +L   D+ GIA TG+GKT +F +P + 
Sbjct: 64  NFKLEGVPPTVLQCC--QGFEKPSPIQGHAWPFLLAGRDLIGIAATGSGKTLAFGIPAMK 121

Query: 62  ILEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +     + +     P  L+L PTRELA Q+AD  E+ G    + V  + GG P   Q  
Sbjct: 122 HVLDKITKTKGKKAAPVCLVLAPTRELAQQIADVLEESGSACGVGVVCVYGGTPKGPQRS 181

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ GA V++ TPGR+ D    G   ++ +  +V+DEADRMLD+GF P I+ I S     
Sbjct: 182 ALKAGARVVVATPGRLQDLMEEGVCSLDQVTYVVLDEADRMLDLGFEPAIRAILSTCCQV 241

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSAT    + K++  F+     ++V   S                  +      +
Sbjct: 242 RQTVMFSATWPMAVSKLAMEFMNEKDPVKVMVGSQDLAANHDVTQIVEVIEDRARDARLE 301

Query: 238 ---LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
                  +      ++F   KK  V +  +L+++G+ V A+HG+  Q  R + +++FK+G
Sbjct: 302 TLLQKYHKSRTNRVLVFVLYKKEAVRVETALQRRGWKVSAVHGDKGQSDRTRAVNSFKDG 361

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           T  L++A+D+AARGLDIPDV +V N+  P   E+Y+HRIGRTGRAG+ G + T   + D 
Sbjct: 362 TRPLLIATDVAARGLDIPDVEYVINYSFPLTTEDYVHRIGRTGRAGKKGLSHTFFTQADR 421

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
                +  ++ +    +  +L      ++K +
Sbjct: 422 ARAGELVNVLREAGQTVPEELLKFGTHVKKKE 453


>gi|148539566|ref|NP_001091916.1| eukaryotic initiation factor 4a [Strongylocentrotus purpuratus]
 gi|126722145|emb|CAM57102.1| eukaryotic initiation factor 4a [Strongylocentrotus purpuratus]
          Length = 426

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 201/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+GL   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F + +L 
Sbjct: 54  NFDDMGLRESLLRGIYAYGFEKPSAIQQRAILPCCEGKDVIAQAQSGTGKTATFAISILQ 113

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L       +  + L+L PTRELA Q+       G    +     IGG         L  
Sbjct: 114 QLNV---EEKQCQALVLAPTRELAQQIHKVIVALGDYLEVKCHPCIGGTNVRDDMNLLSE 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L    I + V+DEAD ML  GF   I ++ S +P   Q +
Sbjct: 171 GVQVIVGTPGRVFDMLKRKVLSPFKICMFVLDEADEMLSRGFKDQIYDVFSWLPSEVQVV 230

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V++ F+++P RI V     + + I+  ++A   +  K   L       
Sbjct: 231 LLSATMPVDVLEVTKKFMRDPIRILVKKEELSLDGIKQFYIAVEKEEWKLDTLCDL--YE 288

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  LC  + ++ F+V  +H ++DQ+ R KI+  F+ G+ ++++ 
Sbjct: 289 TLTITQAVIFCNTRRKVDWLCQKMHERDFTVSIMHRDMDQKERDKIMKEFRTGSSRVLIC 348

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  ED +++  I+
Sbjct: 349 TDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVPDEDKRNLRDIQ 408

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +VD +  +++ L
Sbjct: 409 QFYNTQVDEMPSNVADL 425


>gi|54301879|ref|YP_131872.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46915299|emb|CAG22072.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
          Length = 455

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 143/429 (33%), Positives = 230/429 (53%), Gaps = 20/429 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGL   ++  + +  Y +PTPIQ + IP VL   D+   A TG+GKTA+F LPML 
Sbjct: 36  NFTELGLISPLLARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPMLQ 95

Query: 62  ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113
            L   +       +      LIL PTRELA QVAD+ + Y  ++N  +    + GG+   
Sbjct: 96  HLFLQQHLSSKSSKGNYVTRLILVPTRELAKQVADSIKSYAVHFNGAIKTVAVFGGVSAN 155

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  G D+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  +  L
Sbjct: 156 TQMLALRGGTDILVATPGRLLDLISSNAIKLDRVKTLVLDEADRMLSLGFTDELSALLGL 215

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  +QTLLFSAT  +++Q +++  L +P  I++ +  ++        V    + +    
Sbjct: 216 LPKNKQTLLFSATFPEQVQTLTQELLNDPVEIQLQSADASTLVQRVFTVNKGEKTALLAH 275

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L++Q        +  +IF N K +  +L   L K+G +    HG+  Q +R ++L  FK 
Sbjct: 276 LIKQNEW-----RQALIFVNAKNSCEHLADKLSKRGITAEVFHGDKGQGARTRVLDAFKA 330

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I++++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G A +L+  +D
Sbjct: 331 GEIEVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHDD 390

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
             H   IEK  + +++    +    +   E   IA       N P+ +      +++KN 
Sbjct: 391 YHHFKVIEKKNKIRLEREQVEGFEADEVNEAFLIA-------NKPMAKPEGSGKKKRKNK 443

Query: 414 SSQKSHIPL 422
           +S    I L
Sbjct: 444 ASLNEDIWL 452


>gi|10434373|dbj|BAB14238.1| unnamed protein product [Homo sapiens]
          Length = 547

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 121/493 (24%), Positives = 206/493 (41%), Gaps = 41/493 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F  +GL P+++ AV D G+ +PT IQ K IPL L+  D+   A+TG+GKTA++ +PM   
Sbjct: 9   FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQ 115
            L     G    +  R L+L PT+ELA Q     ++        V +            +
Sbjct: 69  LLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQR 128

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              +E+   V+      +         L +++E+LV+DEAD +   GF   ++++   +P
Sbjct: 129 AVLMEKPDVVVGTPSRTLSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q  L SAT  +++Q + E  L NP  +++             F         K  LL
Sbjct: 189 RIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL+        ++F N  +    L   LE+     C ++G +  RSR  I+S F +G 
Sbjct: 249 YALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGF 308

Query: 296 IQL---------------------------MVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
                                                ARG+D   V  V NFD+P   E 
Sbjct: 309 YDCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEA 368

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHR GRT RA   G   T V   +  H+  IE+L+    +     L      +E+I+  
Sbjct: 369 YIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELL--SGENRGPILLPYQFRMEEIEGF 426

Query: 389 QHNHARKNNPIPQKSTGFDR----RKKNYSSQKSHIPLKESEK-ISKLQQDIQENDADSL 443
           ++        + +++    R    +++   S+K     +++ + +  L+ D+  + A   
Sbjct: 427 RYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVK 486

Query: 444 GFRGNMPAFMLPK 456
              G++P +++P 
Sbjct: 487 PHLGHVPDYLVPP 499


>gi|170050080|ref|XP_001859201.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167871660|gb|EDS35043.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 600

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 109/367 (29%), Positives = 190/367 (51%), Gaps = 5/367 (1%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           +F  L   +S   + A+ + G+ K T IQ K IP +L   D+ G A+TG+GKT +F++P 
Sbjct: 106 EFESLKGKVSDNTLKAITEMGFTKMTEIQAKAIPPLLAGRDLIGSAKTGSGKTLAFLIPA 165

Query: 60  LTILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K + + R    + ++ PTRELA Q+    ++   +++ T  LL+GG     +N+K
Sbjct: 166 VELIYKLQFKPRNGTGVLVISPTRELAMQIFGVLKELSAHHHYTYGLLMGGASRHTENEK 225

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G ++++ TPGR +         L  N++ L+IDE DR+L++GF   ++ I S++P  
Sbjct: 226 LSKGLNIIVATPGRLLDHLKGTPNFLFKNLQCLIIDECDRILEIGFEEDMKQIISILPKK 285

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T   +++ +  L++         + T  T+           S+K  L+  
Sbjct: 286 RQTMLFSATQTSRTEELGKLALKSEPIYVGVDDNKTEATVSGLEQGYIVCPSEKRLLVLF 345

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V             V +IHG   Q  R  +   F      
Sbjct: 346 TFLKKNRKKKVMVFFSSCLSVKFHHELFNYIDLPVNSIHGKQKQAKRTSVFFQFCNAESG 405

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKH 356
           +++ +D+AARGLDIP V  +  +D PN  + YIHR+GRT R     G A  L+  E++  
Sbjct: 406 ILLCTDVAARGLDIPAVDWIVQYDPPNDTKEYIHRVGRTARGDNLCGHALLLLRPEEVAF 465

Query: 357 IDAIEKL 363
           +  +++ 
Sbjct: 466 LKYLKQA 472


>gi|156540308|ref|XP_001599155.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 488

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 98/393 (24%), Positives = 170/393 (43%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  L L P+++  +   G+  P+ IQ   +P +L     ++   +Q+GTGKTA+FVL M
Sbjct: 102 TFEALNLKPELLKGIYQMGFNAPSKIQETALPTLLANPPQNMIAQSQSGTGKTAAFVLAM 161

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++        P+ L L PT ELA Q  +   K  K                A+  ++
Sbjct: 162 LSRVDTS---KPYPQVLCLSPTYELAVQTGEVAAKMAKFCPDIKMKFALKGETLARGTRI 218

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E    +             +   +      ++ +    +   G       I  ++  + Q
Sbjct: 219 EEHVLIGTPGKIMDWSIKFKFFDIKKITAFVLDEADIMIATQGHQDQCIRIHKMLSPSCQ 278

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSAT   E+ + +E  ++N   I +     + E I+  +V       K        +
Sbjct: 279 MMFFSATYDTEVMEFAELIVKNATIIRLQKEEESLENIKQYYVKCGNIEEK--YQAITNI 336

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   IIFC  KK    L   + + G SV  + G++    R+ +L  F+EG  +++
Sbjct: 337 YGVITIGQAIIFCQTKKTACWLSDKMTQDGHSVAILSGDLTVEDRISVLDRFREGLEKVL 396

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           + +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G  G A  LV +  
Sbjct: 397 ITTNVLARGIDVEQVTIVVNFDLPVDQNQQADYETYLHRIGRTGRFGNSGVAINLVDSTR 456

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
            ++    IE+  ++ +  L+ +       +EKI
Sbjct: 457 SMQICQDIERHFKRTIYHLDAEDPD---AIEKI 486


>gi|83318931|emb|CAJ38803.1| Vasa protein isoform [Platynereis dumerilii]
          Length = 732

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 121/390 (31%), Positives = 195/390 (50%), Gaps = 12/390 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F    LS  V   V  A Y +PTPIQ   IP+VL   D+ G AQTG+GKTA+F+LP+L
Sbjct: 290 LNFDQADLSETVRSNVRKAKYDRPTPIQKWAIPIVLSGKDLMGCAQTGSGKTAAFLLPVL 349

Query: 61  TILEK--------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
           T + K        G    + P  +I+ PTREL  Q+     K+  +  +   ++ GG   
Sbjct: 350 TGIIKNDLIEGGSGFGGPQYPAAIIVGPTRELVNQIYLEARKFASSTCVRPVVVYGGTSV 409

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q ++LE+GA V++ TPGR+LD   +GK+ ++ ++ L++DEADRMLDMGF P I+ + +
Sbjct: 410 GYQARELEKGAHVVVGTPGRLLDFIGKGKINLSKVKYLILDEADRMLDMGFEPEIRKLVT 469

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                 +    +   +       +   +      V                   Q +K  
Sbjct: 470 TFDMPEKGQRQTLMFSATFAAEIQQLAKEFLSEYVFVTVGRVGGANSDITQEVHQVTKYE 529

Query: 233 ALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              + +   +Q      ++F   K++   L   L ++ +   +IHG+  QR R + L +F
Sbjct: 530 KREKLVEILNQAGTDRTLVFLETKRSADFLAAYLSQEQYPATSIHGDRLQREREEALLDF 589

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   +++A+ +AARGLDIP V HV N+D+P+  + Y+HRIGRTGR G  GKA +    
Sbjct: 590 KTGRAPILIATSVAARGLDIPGVKHVINYDLPSGIDEYVHRIGRTGRCGNLGKATSFFDP 649

Query: 352 E---DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           +   D +   ++ K +      +   L  +
Sbjct: 650 DVNQDKELARSLVKTLGDAQQVVPPWLEEI 679


>gi|70663480|emb|CAJ15139.1| vasa homlogue [Platynereis dumerilii]
          Length = 712

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 121/390 (31%), Positives = 195/390 (50%), Gaps = 12/390 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F    LS  V   V  A Y +PTPIQ   IP+VL   D+ G AQTG+GKTA+F+LP+L
Sbjct: 270 LNFDQADLSETVRSNVRKAKYDRPTPIQKWAIPIVLSGKDLMGCAQTGSGKTAAFLLPVL 329

Query: 61  TILEK--------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
           T + K        G    + P  +I+ PTREL  Q+     K+  +  +   ++ GG   
Sbjct: 330 TGIIKNDLIEGGSGFGGPQYPAAIIVGPTRELVNQIYLEARKFASSTCVRPVVVYGGTSV 389

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q ++LE+GA V++ TPGR+LD   +GK+ ++ ++ L++DEADRMLDMGF P I+ + +
Sbjct: 390 GYQARELEKGAHVVVGTPGRLLDFIGKGKINLSKVKYLILDEADRMLDMGFEPEIRKLVT 449

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                 +    +   +       +   +      V                   Q +K  
Sbjct: 450 TFDMPEKGQRQTLMFSATFAAEIQQLAKEFLSEYVFVTVGRVGGANSDITQEVHQVTKYE 509

Query: 233 ALLQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              + +   +Q      ++F   K++   L   L ++ +   +IHG+  QR R + L +F
Sbjct: 510 KREKLVEILNQAGTDRTLVFLETKRSADFLAAYLSQEQYPATSIHGDRLQREREEALLDF 569

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   +++A+ +AARGLDIP V HV N+D+P+  + Y+HRIGRTGR G  GKA +    
Sbjct: 570 KTGRAPILIATSVAARGLDIPGVKHVINYDLPSGIDEYVHRIGRTGRCGNLGKATSFFDP 629

Query: 352 E---DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           +   D +   ++ K +      +   L  +
Sbjct: 630 DVNQDKELARSLVKTLGDAQQVVPPWLEEI 659


>gi|330976959|gb|EGH76980.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 459

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 128/378 (33%), Positives = 213/378 (56%), Gaps = 8/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++ +    L +  G+ F  Q   LE 
Sbjct: 66  I---NPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F+++P+ ++V    + ++  +  +  +  Q  +    +      
Sbjct: 183 LFSATYPVGIKQLSSKFMRDPQIVKVEALHADSQIEQIFYEISPEQRLEAVVKVL----G 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FC  K+ V  +   L  +G S   +HG++DQR R ++L+ F   +  ++VA
Sbjct: 239 HFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLDQRDRDQVLAMFANRSTSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 299 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 358

Query: 362 KLIEKKVDWLNGDLSSLN 379
           +L +  ++W   D  S+ 
Sbjct: 359 ELQKAPLNWQQYDRLSIK 376


>gi|309360868|emb|CAP30554.2| hypothetical protein CBG_11408 [Caenorhabditis briggsae AF16]
          Length = 559

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 126/380 (33%), Positives = 199/380 (52%), Gaps = 4/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F +  L  +V   +    + KPT IQ  + P+ +   D+  IA+TG+GKT +F+LP   
Sbjct: 131 EFNEAPLPGQVHELLYGK-FQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALV 189

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +  R R   P  L+L PTRELA QV +    +  +  L +  L GG     Q + L
Sbjct: 190 HITKQPHRQRGEGPSVLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDL 249

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+ + TPGR+LD  + G   M     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 250 ERGVDIAVATPGRLLDFLDNGTTNMKRCSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 309

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ-L 238
           TL+FSAT   E++ ++ +F ++   + V +    A       V    +++K+  L++   
Sbjct: 310 TLMFSATWPKEVRSLASDFQKDAAFLNVGSLELAANHNITQVVDVLEEHAKQAKLMELLN 369

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     IIF   K+    L  ++ + G+    IHG+ +Q  R  +L  FK G + +
Sbjct: 370 HIMNQKECKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKMPI 429

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLD+ D+  V N+D PN +E+Y+HRIGRTGR  + G A+T     +     
Sbjct: 430 LLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRRDKKGTAYTFFTHTNASKAK 489

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + K++++    +   L  +
Sbjct: 490 DLLKVLDEAKQNVPQALRDM 509


>gi|90962087|ref|YP_536003.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
 gi|90821281|gb|ABD99920.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
          Length = 440

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 115/365 (31%), Positives = 183/365 (50%), Gaps = 9/365 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +      +  A+ +  + +PT +Q + IP +L+   V G +QTG+GKT +F+LP+  
Sbjct: 3   NFREFNFKEYIYQALDEINFKEPTEVQARLIPTILKGKSVVGQSQTGSGKTHTFLLPIFQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE- 120
            L   +  V+     I  P+RELA Q+ +  ++  K     + +       + Q +  + 
Sbjct: 63  NLNAQKDEVQAV---ITTPSRELAYQIYEAAKQLAKFSPENIWIQNYVGGTDKQRQIEKL 119

Query: 121 --RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 ++I TPGRILD      L ++N   LV+DEAD  LD+GF+     I S +P   
Sbjct: 120 KSHQPQLVIGTPGRILDLVRENALDIHNAHYLVVDEADMTLDLGFLKETDAIASTLPKDL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+     ++ NP    V      + TI++  ++T  +   K       
Sbjct: 180 QMLVFSATIPEKLRPFLRKYMYNPVIEVVANKHVISPTIDNWLISTKGRDRNKLIYDLL- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +       ++F N K+    L + L  QG  V  +HG I  R R +I+   +    Q 
Sbjct: 239 --TMGEPYLALVFANTKERADELTNYLRSQGLKVAKVHGGIQPRQRKRIMREIQNLDYQF 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N D+P   E ++HR+GRTGR G  G A TL    + K ID
Sbjct: 297 VVATDLAARGIDIEGVSHVINDDIPEDLEFFVHRVGRTGRNGMKGTAITLYEPSEEKLID 356

Query: 359 AIEKL 363
            +E +
Sbjct: 357 ELESM 361


>gi|290989782|ref|XP_002677516.1| DEAD/DEAH box helicase [Naegleria gruberi]
 gi|284091124|gb|EFC44772.1| DEAD/DEAH box helicase [Naegleria gruberi]
          Length = 535

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 126/390 (32%), Positives = 193/390 (49%), Gaps = 14/390 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPM- 59
            F +  L   ++  V  +GY KPTPIQ  ++P ++  + D+   AQTG+GKTA+F+LP+ 
Sbjct: 106 TFEEADLHELLMTNVKKSGYTKPTPIQKHSMPAIVTSKRDMMACAQTGSGKTAAFLLPII 165

Query: 60  --------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
                        +       P+ +IL PTREL  Q+ D   K+     L   ++ GG  
Sbjct: 166 NALLKSGIHKDKRRFAPNKGNPKAVILAPTRELCQQIYDECRKFIFQTYLKTVVVYGGAS 225

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q K+LERG D+L+ TPGR+ D   R KL M+ ++ LV+DEADRMLDMGF P I++I 
Sbjct: 226 SGYQMKQLERGVDILVGTPGRMNDFIQREKLDMSGVQYLVLDEADRMLDMGFEPQIRSIV 285

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENF---LQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
                  +    +   +    K ++       + +                       + 
Sbjct: 286 EGSGMPPKGDRLTLLYSATFPKETQKLALDFLHDELFVQVGIIGGTTDNITQSFYQVDRR 345

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            K+  L++ L + ++  +  ++F  QK     +   L   GF    IHG+ DQRSR + L
Sbjct: 346 GKQDKLVEVLTEKKEEREKTLVFVQQKSTCDRIYELLTPLGFKCSVIHGDKDQRSRERSL 405

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             FK+G   ++VA+D+AARGLDI  V HV N+D+P   ++YIHRIGRTGR G  G A   
Sbjct: 406 RQFKDGYTNILVATDVAARGLDIEKVAHVINYDLPKEIDSYIHRIGRTGRVGNLGIATAF 465

Query: 349 VAK-EDIKHIDAIEKLIEKKVDWLNGDLSS 377
               ED K    + K+++     +   + +
Sbjct: 466 FDPSEDGKLCRELVKILKDANQEIPEFIEN 495


>gi|221126753|ref|XP_002164824.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
 gi|260222162|emb|CBA31453.1| ATP-independent RNA helicase dbpA [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 460

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 134/405 (33%), Positives = 209/405 (51%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P  +  +   G+   TPIQ  ++P+ L   D+   A+TG+GKTA+F LP+L  
Sbjct: 4   FSTLPLAPATLANLQQLGFDAMTPIQAASLPVALAGKDLIAQAKTGSGKTAAFALPLLAK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-ER 121
           L      V+    ++L PTRELA QV     +  +  +    + + G       +   E 
Sbjct: 64  LNPRWFAVQ---AMVLCPTRELADQVTVEIRRLARAQDNIKVVTLCGGVATRGQRASLEN 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+D   R  L +  +  LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 121 GAHIVVGTPGRIMDLLEREYLTLEGLNTLVLDEADRMLDMGFFDDIVTVARQCPKERQTL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + ++K+++ F+Q+P++I+V  P +            +    +        + +
Sbjct: 181 LFSATYPEGIEKLAKQFMQDPQQIKVEAPVADN----TIEQRFFEVDRESRFSAVCSILN 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+    L   L   GF   A+HG++DQR R ++L+ F   +  ++VA
Sbjct: 237 HFRPVSTIAFCNTKQQCNELVDKLVTDGFVAQALHGDLDQRERDQVLAQFANRSCSVLVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLD+ ++  V N D+    E ++HRIGRTGRAG  G A +L +  ++  +  IE
Sbjct: 297 TDVASRGLDVKELDIVINVDITPDPEVHVHRIGRTGRAGEKGLAVSLASMREMGAVGKIE 356

Query: 362 KLIEK-----KVDWLNGDLSS-LNPPLEKIDIAQHNHARKNNPIP 400
           +         K+D L    S  L PP+  + IA     RK    P
Sbjct: 357 QYQNTPSVWHKLDELTPTGSGRLLPPMVTVQIA---GGRKEKIRP 398


>gi|86171847|ref|XP_966291.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Plasmodium
           falciparum 3D7]
 gi|46361260|emb|CAG25121.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Plasmodium
           falciparum 3D7]
 gi|223673362|gb|ACN12798.1| DEAD-box helicase 9 [Plasmodium falciparum]
          Length = 601

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 118/381 (30%), Positives = 185/381 (48%), Gaps = 7/381 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F +L +   +   + +  +V  T IQ K IP  L   D+ G A+TG+GKT +F++P +
Sbjct: 148 LKFEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLVPSI 207

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +             LI+ PTREL  Q+    +   K    T  ++IGG+    + KK 
Sbjct: 208 NILYNIKFLPKNGTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEEKKKF 267

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEIL-VIDEADRMLDMGFIPYIQNITSLVPFTR 178
             G ++LI TPGR+LDH    K  +    I  +IDEADR+L +GF   I  I   +P  R
Sbjct: 268 IHGINILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLPKKR 327

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT LFSAT T +++ +    LQ P  IEV T  +T E +             K  LL   
Sbjct: 328 QTALFSATQTTKVESLIRLSLQKPIFIEVTTKIATVERL---QQGYALVDEDKRFLLLFT 384

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  ++F N   +V      L         IHG   Q  R+K   +F      +
Sbjct: 385 FLKKNMSKKIMVFFNNCMSVQFYNDLLNYIDIPTYCIHGKKKQNKRLKSFHDFSAAKCAI 444

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHI 357
           ++ +++AARGLDIP+V ++  +D P+ ++ YIHR+GRT R    +G A   + K ++K +
Sbjct: 445 LLCTNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCRGQDSNGSAIIFLMKHELKFL 504

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
           + + K     ++    D + L
Sbjct: 505 NYL-KFYNIPINQFAYDPNKL 524


>gi|116180670|ref|XP_001220184.1| cell cycle control protein-related [Chaetomium globosum CBS 148.51]
 gi|118593420|sp|Q2HFP1|IF4A_CHAGB RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|88185260|gb|EAQ92728.1| cell cycle control protein-related [Chaetomium globosum CBS 148.51]
          Length = 397

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 210/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L  +++  +   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 25  SFDDMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQ 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+  + LIL PTRELA Q+       G   N+     IGG       K L+ 
Sbjct: 85  KIDPT---VKSCQALILAPTRELAQQIQKVVIAIGDFMNIECHACIGGTSVRDDMKALQD 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + +++ V+DEAD ML  GF   I +I  L+P + Q +
Sbjct: 142 GPQVIVGTPGRVHDMIQRRILKTDQMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVV 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 202 LLSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEDWKLDT--LSDLYE 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L+ + F+V A+HG++DQ  R  I+  F+ G+ ++++A
Sbjct: 260 TVTITQAVIFCNTRRKVDWLTDKLQARDFTVSAMHGDMDQTQRDLIMKEFRSGSSRVLIA 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 320 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 379

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 380 QFYSTQIEEMPMNVADL 396


>gi|326429718|gb|EGD75288.1| DEAD/H box polypeptide 3 [Salpingoeca sp. ATCC 50818]
          Length = 710

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 138/392 (35%), Positives = 206/392 (52%), Gaps = 17/392 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
           DF D GL+  V   +  AGY KPTP+Q  +IP+V  R D+   AQTG+GKTA+F++P++ 
Sbjct: 219 DFFDCGLADVVTNNLRLAGYTKPTPVQKYSIPIVTARRDLMACAQTGSGKTAAFLVPIIS 278

Query: 61  ----------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                         +     + P  LIL PTRELA+Q+     K+     +    + GG 
Sbjct: 279 RVLETGPVEVPETARRMEGKQFPVCLILAPTRELASQIFAEARKFAYRAKIRACCVYGGT 338

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ-- 168
            F +Q + L+RG  VL+ TPGR++D   RG++ M+ I  LV+DEADRMLDMGF P I+  
Sbjct: 339 DFRSQFRDLQRGCQVLVATPGRLVDLLERGRIGMDAIRFLVLDEADRMLDMGFEPQIRRI 398

Query: 169 --NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
               T   P  RQTL+FSAT   ++Q ++ +FL +   I V    ST E I         
Sbjct: 399 VEQDTMPPPGVRQTLMFSATFPKDIQVLARDFLHDCVSISVGRIGSTTENIFQKVYWVQE 458

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              +    L  L+ +    +  ++F   K+    L   L  Q F   +IHG+  Q  R +
Sbjct: 459 HEKR--QTLLDLISAASEKELVLVFVETKRGADALEDFLIHQQFPASSIHGDRTQEQRER 516

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L++F++G   ++VA+ +AARGLDIP+V  V NFD+P+  + Y+HRIGRTGR G  G+A 
Sbjct: 517 ALASFRDGYTPILVATAVAARGLDIPNVKRVINFDLPSDIDEYVHRIGRTGRVGHKGQAI 576

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           +    ++      +   + +    +   L   
Sbjct: 577 SFFNDKNANVARDLLDTLRECKQEVPDWLEDF 608


>gi|228991148|ref|ZP_04151107.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus pseudomycoides
           DSM 12442]
 gi|228768561|gb|EEM17165.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus pseudomycoides
           DSM 12442]
          Length = 389

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 104/367 (28%), Positives = 192/367 (52%), Gaps = 11/367 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P +  A   AG+ + T IQ + IP++L+  DV   + TGTGKT +++LP+L  +      
Sbjct: 7   PFLQQAWEKAGFKEFTEIQKQAIPMILEGQDVIAESPTGTGKTLAYLLPLLHKI---NPE 63

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           V+ P+ +IL PTREL  Q+ +  +K+    +++ A LIGG   + Q ++L++   V++ +
Sbjct: 64  VKQPQVVILAPTRELVMQIHEEVQKFTAGTDISGASLIGGADIKRQVERLKKHPKVIVGS 123

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGRIL+     KL M+ ++ +V DE D+++    +  + ++       RQ + FSATMT 
Sbjct: 124 PGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMETVFDVIKSTMRDRQLVFFSATMTK 183

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
           + ++V+ +F   P+ + +    + +         TY    ++                 +
Sbjct: 184 DAEEVARDFAVEPELVRIKRTETKSLVE-----HTYIVCERREKNDYIRRVMHTGNVKAV 238

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
            F N    +  +   L+ +     A+H   +++ R   +  F++G I++++A+D+AARGL
Sbjct: 239 AFLNDPYRLDEIAEKLKYRKMKAAALHAEANKQEREATMRAFRQGKIEILLATDIAARGL 298

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE---K 366
           DI D+ HV + ++P+  + YIHR GRTGR G+ G   +LV  ++ + +    K +    K
Sbjct: 299 DIDDLTHVIHLELPDTLDQYIHRSGRTGRMGKEGTVVSLVTPQEERKLLQFAKKLGIQFK 358

Query: 367 KVDWLNG 373
           K +   G
Sbjct: 359 KQEMFKG 365


>gi|332263854|ref|XP_003280965.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
           DDX19A-like [Nomascus leucogenys]
          Length = 478

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 92  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 151

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      R P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 152 LSRVEPAD---RYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 208

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 209 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 268

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        L
Sbjct: 269 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 326

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 327 YGAITIAQAMIFCHVRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 386

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 387 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 446

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 447 SMNILNRIQEHFNKKIERLDTD 468


>gi|119581499|gb|EAW61095.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56, isoform CRA_c [Homo
           sapiens]
          Length = 547

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 121/493 (24%), Positives = 206/493 (41%), Gaps = 41/493 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F  +GL P+++ AV D G+ +PT IQ K IPL L+  D+   A+TG+GKTA++ +PM   
Sbjct: 9   FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQ 115
            L     G    +  R L+L PT+ELA Q     ++        V +            +
Sbjct: 69  LLHRKAVGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQR 128

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              +E+   V+      +         L +++E+LV+DEAD +   GF   ++++   +P
Sbjct: 129 AVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q  L SAT  +++Q + E  L NP  +++             F         K  LL
Sbjct: 189 RIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL+        ++F N  +    L   LE+     C ++G +  RSR  I+S F +G 
Sbjct: 249 YALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGF 308

Query: 296 IQL---------------------------MVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
                                                ARG+D   V  V NFD+P   E 
Sbjct: 309 YDCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEA 368

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHR GRT RA   G   T V   +  H+  IE+L+    +     L      +E+I+  
Sbjct: 369 YIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELL--SGENRGPILLPYQFRMEEIEGF 426

Query: 389 QHNHARKNNPIPQKSTGFDR----RKKNYSSQKSHIPLKESEK-ISKLQQDIQENDADSL 443
           ++        + +++    R    +++   S+K     +++ + +  L+ D+  + A   
Sbjct: 427 RYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVK 486

Query: 444 GFRGNMPAFMLPK 456
              G++P +++P 
Sbjct: 487 PHLGHVPDYLVPP 499


>gi|54301892|ref|YP_131885.1| ATP-dependent RNA helicase DbpA [Photobacterium profundum SS9]
 gi|46915312|emb|CAG22085.1| putative ATP-dependent RNA helicase DbpA [Photobacterium profundum
           SS9]
          Length = 462

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 132/405 (32%), Positives = 215/405 (53%), Gaps = 16/405 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L   ++  +   GY   TPIQ  ++P +L   DV    +TG+GKTA+F L +L  
Sbjct: 6   FSTLNLHADLLKNLTSLGYESMTPIQALSLPHILAGEDVIAQGKTGSGKTAAFGLGLLEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L   R RV+   +L+L PTRELA QVA    K  +  +    L +  G+PF  Q   LE 
Sbjct: 66  LNVKRFRVQ---SLVLCPTRELADQVAKEIRKLARTIHNIKVLTLCGGMPFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI +H  +G L ++++EIL++DEADRML+MGF   +  I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIEEHVRKGTLNLDDLEILILDEADRMLEMGFQDSLDEIIDAAPQRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   +++ V++       +  +    ST +             +++     +LL  
Sbjct: 183 LFSATYPPQIKSVADRI---MHKPVMAKVESTHDESTIQQHFYKVDGNEQRLTALRLLLL 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   ++ ++FCN K+    +   L   GFS  A+HG+++QR R + L  F   +  ++VA
Sbjct: 240 KHRPESTVVFCNTKREAQEVSDDLVDYGFSSIALHGDLEQRERDQALVLFANKSTSVLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N+ +    E ++HRIGRTGRAG  G A +L++ ++   +  +E
Sbjct: 300 TDVAARGLDIDSLDAVINYHLARDTEVHVHRIGRTGRAGSKGIACSLISDKEHYKVAMLE 359

Query: 362 KLIEKKV--DWLNG----DLSSLNPPLEKIDIAQHNHARKNNPIP 400
             +++ +  + L      D  +  P +  + I   +  ++    P
Sbjct: 360 DYLDRAISGEPLPSMDLLDQPTFRPAMTTLQI---DGGKRQKIRP 401


>gi|119477463|ref|ZP_01617654.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143]
 gi|119449389|gb|EAW30628.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143]
          Length = 457

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 200/388 (51%), Gaps = 13/388 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L  +++  + D G+   +PIQ  T+P  +Q HD  G AQTGTGKTA+F++ ++  
Sbjct: 77  FHDLSLDDRLMHGIADLGFEYCSPIQAGTLPQTMQGHDAIGKAQTGTGKTAAFLITIIND 136

Query: 63  LEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 +       PR LI+ PTREL  Q+ ++ +   K   L VA LIGG+ ++ Q ++
Sbjct: 137 FLANPIKEERYAGEPRALIIAPTRELVVQIGEDAKSLNKYTGLKVATLIGGMDYQKQLQQ 196

Query: 119 LERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L R   D+++ TPGR+LD  +RG L ++ IEILVIDEADRMLDMGFIP ++ I    P  
Sbjct: 197 LSRELVDIVVATPGRLLDFQSRGDLYLDQIEILVIDEADRMLDMGFIPQVRRIVRSTPRK 256

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
                   + T    +V     Q             +   +      Y   + +   L +
Sbjct: 257 ESRQTLLFSAT-FTPEVLSLTEQWTFEPFSLEIEPDSVATDTVDQKVYIVAADQKFALLR 315

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +      K+ I+F N++     L   L K G     + G I Q  R + L  FK+G +Q
Sbjct: 316 NIVQLPDAKSIIVFANRRDQTRKLYERLRKAGIRCGILSGEIPQNKRSQTLQRFKDGDLQ 375

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A RG+ +  V HV N+ +P   E+Y+HRIGRTGRAG  G + +   ++D   +
Sbjct: 376 VLVATDVAGRGIHVDGVSHVINYTLPEDPEDYVHRIGRTGRAGATGTSISFACEDDSFLL 435

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
             +E+L+  K       LS   PP E +
Sbjct: 436 APLEELLGSK-------LSCTQPPEEML 456


>gi|194378748|dbj|BAG63539.1| unnamed protein product [Homo sapiens]
          Length = 657

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 137/429 (31%), Positives = 218/429 (50%), Gaps = 30/429 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D+ +   ++  +    Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+
Sbjct: 176 NFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILS 235

Query: 62  ILEKGRA---------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
            +                    R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 236 QIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 295

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 296 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 355

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 356 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 415

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +       +L +  +    ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 416 WVEDLDKRSFL--LDILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 473

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 474 DREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNL 533

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH--ARKNNPIP 400
           G A +   ++++     +       +D L      +   LE +    H    +R  +   
Sbjct: 534 GLATSFFNEKNMNITKDL-------LDLLVEAKQEVPSWLENMAYEHHYKGGSRGRSKSN 586

Query: 401 QKSTGFDRR 409
           + S GF  R
Sbjct: 587 RFSGGFGAR 595


>gi|13514809|ref|NP_004651.2| ATP-dependent RNA helicase DDX3Y [Homo sapiens]
 gi|169881239|ref|NP_001116137.1| ATP-dependent RNA helicase DDX3Y [Homo sapiens]
 gi|73620957|sp|O15523|DDX3Y_HUMAN RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName: Full=DEAD
           box protein 3, Y-chromosomal
 gi|23273291|gb|AAH34942.1| DDX3Y protein [Homo sapiens]
 gi|119612016|gb|EAW91610.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_a
           [Homo sapiens]
 gi|119612017|gb|EAW91611.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_a
           [Homo sapiens]
          Length = 660

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 137/429 (31%), Positives = 218/429 (50%), Gaps = 30/429 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D+ +   ++  +    Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+
Sbjct: 179 NFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILS 238

Query: 62  ILEKGRA---------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
            +                    R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 239 QIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 298

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 299 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 358

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 359 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 418

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +       +L +  +    ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 419 WVEDLDKRSFL--LDILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 476

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 477 DREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNL 536

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH--ARKNNPIP 400
           G A +   ++++     +       +D L      +   LE +    H    +R  +   
Sbjct: 537 GLATSFFNEKNMNITKDL-------LDLLVEAKQEVPSWLENMAYEHHYKGGSRGRSKSN 589

Query: 401 QKSTGFDRR 409
           + S GF  R
Sbjct: 590 RFSGGFGAR 598


>gi|71022799|ref|XP_761629.1| hypothetical protein UM05482.1 [Ustilago maydis 521]
 gi|74699660|sp|Q4P331|IF4A_USTMA RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|46101182|gb|EAK86415.1| hypothetical protein UM05482.1 [Ustilago maydis 521]
          Length = 411

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L  +++  V   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 39  NFDNMELKEELLRGVYAYGFERPSAIQARAIVPVIKGHDVIAQAQSGTGKTATFSIAILQ 98

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+    LIL PTRELA Q+       G    +     IGG        KL  
Sbjct: 99  RIDPSIKAVQA---LILAPTRELAQQIQKVVIALGDYMKIDCHACIGGTNVREDMAKLNE 155

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR+ D  NR     + +++  +DEAD ML  GF   +  +  L+P   Q +
Sbjct: 156 GAQVVVGTPGRVYDMINRRAFKTDQLKMFCLDEADEMLSRGFKDQMYEVFQLLPQDTQCV 215

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+ +V++ F+++P RI V     T E I+  +VA   +  K   L       
Sbjct: 216 LLSATMPQEVLEVTKKFMRDPIRILVKRDELTLEGIKQFYVAVEKEDWKLDTLCDL--YE 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++ 
Sbjct: 274 TVTITQAVIFCNTRRKVDWLTDKLTSREFTVSAMHGDMEQAQREVIMREFRSGSSRVLIT 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 334 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTSDDVRMLRDIE 393

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++D +  +++ L
Sbjct: 394 QFYSTQIDEMPLNVADL 410


>gi|323977024|gb|EGB72111.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
          Length = 457

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 208/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  KIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ + +LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNMLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAITA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L   G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNDIGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W    ++S   PLE
Sbjct: 357 SDMLQIKLNWQTPPVNSSIVPLE 379


>gi|323964518|gb|EGB59993.1| DEAD/DEAH box helicase [Escherichia coli M863]
          Length = 398

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 208/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  KIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ + +LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNMLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAITA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L   G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNDIGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W    ++S   PLE
Sbjct: 357 SDMLQIKLNWQTPPVNSSIVPLE 379


>gi|261820728|ref|YP_003258834.1| ATP-dependent RNA helicase DbpA [Pectobacterium wasabiae WPP163]
 gi|261604741|gb|ACX87227.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 490

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 126/374 (33%), Positives = 208/374 (55%), Gaps = 8/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L  + +  + + GY   TP+Q  T+P VL   DV   A+TG+GKTA+F + +L 
Sbjct: 35  SFSSLALPAEQLSNLNELGYTDMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLD 94

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            +          + L+L PTRELA QV+    +  +       L + G  P   Q   L 
Sbjct: 95  RIVVSD---FTTQALVLCPTRELADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSLV 151

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRI DH  +  L ++++++LV+DEADRMLDMGF   I ++ S  P  RQT
Sbjct: 152 HAPHIVVGTPGRIQDHLRKRSLSLDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQT 211

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  +E++++S    + P+R E+      +   +      Y    ++   L   + 
Sbjct: 212 LLFSATYPEEIEQISARVQRQPQRFEIADNVEESAIEQR----FYETTKEQRLPLLIAIL 267

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN K++  ++  +L+ +G SV A+HG+++QR R ++L  F   + +++V
Sbjct: 268 SHYQPASCVVFCNTKRDCQSVFDALDMRGISVSALHGDLEQRDRDQVLVRFANRSCRVLV 327

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++  V NF++    E ++HRIGRTGRAG  G A +L   +++   + I
Sbjct: 328 ATDVAARGLDIKELALVVNFELAFDPEVHVHRIGRTGRAGTQGLAVSLCTPQEMNRANLI 387

Query: 361 EKLIEKKVDWLNGD 374
           E  +  ++ W + D
Sbjct: 388 EDYLGMRIKWTSAD 401


>gi|260941344|ref|XP_002614838.1| hypothetical protein CLUG_04853 [Clavispora lusitaniae ATCC 42720]
 gi|238851261|gb|EEQ40725.1| hypothetical protein CLUG_04853 [Clavispora lusitaniae ATCC 42720]
          Length = 748

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 146/473 (30%), Positives = 240/473 (50%), Gaps = 32/473 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L+  V+  +   GY KP+PIQ  +IP+ L   D+   A TG+GKTA++++P++ 
Sbjct: 237 SFQSLDLARPVLKGLASLGYTKPSPIQSASIPIALLGKDIVAGAVTGSGKTAAYMIPIIE 296

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L    ++V   R +IL PTRELA QV D  +K G+  N  T  L +GG+    Q ++L+
Sbjct: 297 RLLYKSSKVASTRVVILTPTRELAIQVCDVGKKIGRYVNNLTFGLAVGGLNLRQQEQQLK 356

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFI-PYIQNITSLVPFTR 178
              D+++ TPGR++DH         + +EILV+DEADRML+ GF     + +T +    R
Sbjct: 357 TRPDIVVATPGRLIDHIRNSASFSLDALEILVMDEADRMLEEGFQVELTEILTLIPKHKR 416

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA--LLQ 236
           QT+LFSATM  ++Q + +  L  P RI ++ P + A  +   FV    +   K A     
Sbjct: 417 QTMLFSATMNTKIQDLIQLSLNKPVRIMIDPPKAAANKLVQEFVRIRKKDEMKPALLYYL 476

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                       ++F ++K+    L   L   G  V  +HG++ Q  R+  +++FK  T+
Sbjct: 477 LKSVDPSQQSRIVVFVSRKETAHRLRIILGLLGMKVSELHGSLTQEQRLNNVNDFKNLTV 536

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK--EDI 354
            +++ +DLAARGLDIP +  V N+D+P   E Y+HR+GRT RAGR G++ T V +   D 
Sbjct: 537 PVLICTDLAARGLDIPKIEMVINYDMPKSHEIYLHRVGRTARAGREGRSITFVGEAAADR 596

Query: 355 KHIDAIEKLIE----------KKVDWLNGDL---------SSLNPPLEKIDIAQH----- 390
             + A  K +E          + VDW   ++          ++   LE+   A+      
Sbjct: 597 NIVKAAMKSLEESQSQQKAVSRNVDWPKVEVYHNVVQEKNDTVQEVLEEEKSAKEVLAAE 656

Query: 391 -NHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADS 442
              A+ +N I        R ++ +   +S    ++S  + +L +D  + ++  
Sbjct: 657 MELAKADNLIKYGKDIQSRPRRTWFESESEKKKRQSLVMQQLTKDKHKPNSKK 709


>gi|192447401|ref|NP_001122187.1| ATP-dependent RNA helicase DDX19A [Danio rerio]
 gi|190337852|gb|AAI62175.1| Similar to ATP-dependent RNA helicase DDX19B (DEAD box protein 19B)
           (DEAD box RNA helicase DEAD5) [Danio rerio]
 gi|190338805|gb|AAI62171.1| Similar to ATP-dependent RNA helicase DDX19B (DEAD box protein 19B)
           (DEAD box RNA helicase DEAD5) [Danio rerio]
          Length = 471

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 98/382 (25%), Positives = 179/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V + G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 85  TFEELRLKPQLLKGVYEMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 144

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++      +  + L + PT ELA Q     E+ GK Y               +  ++
Sbjct: 145 LSHVDPAC---KWSQCLCISPTYELALQTGKVIEQMGKFYPEVTLAYAVRGHRMERGVRI 201

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +             +          ++ +    +   G       I  ++P   Q
Sbjct: 202 KDQIVIGTPGTVLDWCIKLKLIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPKGCQ 261

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K +E  + +P  I++     T +TI+  +V   ++  K  AL    +
Sbjct: 262 MLLFSATFEDSVWKFAERVVPDPNIIKLKREEETLDTIKQYYVLCNSKEDKFNALC--NI 319

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   + K+G  V  + G +    R  ++  F++G  +++
Sbjct: 320 YGAITIAQAMIFCHTRKMANWLAGQMSKEGHQVALLSGEMVVEQRAAVIERFRDGKEKVL 379

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           + +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V ++ 
Sbjct: 380 ITTNVCARGIDVEQVSVVINFDLPLDKDSNPDNETYLHRIGRTGRFGKRGLAINMVDSQR 439

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            ++ +   E+  +KK+  L+ D
Sbjct: 440 SMEILKTYERHFDKKIARLDTD 461


>gi|300937578|ref|ZP_07152392.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
 gi|300457386|gb|EFK20879.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
          Length = 457

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 209/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ + +LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNMLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAITA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W    ++S   PLE
Sbjct: 357 SDMLQIKLNWQTPPVNSSIVPLE 379


>gi|71995514|ref|NP_001021793.1| Vasa- and Belle-like Helicase family member (vbh-1) [Caenorhabditis
           elegans]
 gi|51988117|gb|AAU20831.1| Vasa- and belle-like helicase protein 1, isoform c, partially
           confirmed by transcript evidence [Caenorhabditis
           elegans]
          Length = 660

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 127/392 (32%), Positives = 200/392 (51%), Gaps = 17/392 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + G  P V+  V  +GY KPTP+Q  +IP +L   D+   AQTG+GKTA+F+LP++  
Sbjct: 141 FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQH 200

Query: 63  L------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGG 109
           +                 R   P  L+L PTRELA Q+     K+    N+  A L  G 
Sbjct: 201 ILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGR 260

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
             +  Q  +L  G  +LI TPGR++D   +G + +     LV+DEADRMLDMGF P I+ 
Sbjct: 261 ENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRK 320

Query: 170 IT---SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
           I          R T +FSAT   E+Q ++++FL++           +        +    
Sbjct: 321 IVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWVN 380

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           +  K+  L+ ++L ++ +    ++F   K+    L + L +Q     +IHG++ Q  R +
Sbjct: 381 EMEKRSNLM-EILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERER 439

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P  ++ Y+HRIGRTGR G  G A 
Sbjct: 440 NLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIAT 499

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           +    ++      ++ LI +    +   L  +
Sbjct: 500 SFFNDKNRGIGRDLKNLIVESNQEVPEWLHQV 531


>gi|17510307|ref|NP_491112.1| Vasa- and Belle-like Helicase family member (vbh-1) [Caenorhabditis
           elegans]
 gi|14574398|gb|AAK68520.1|AC024810_19 Vasa- and belle-like helicase protein 1, isoform b, confirmed by
           transcript evidence [Caenorhabditis elegans]
          Length = 644

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 127/392 (32%), Positives = 200/392 (51%), Gaps = 17/392 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + G  P V+  V  +GY KPTP+Q  +IP +L   D+   AQTG+GKTA+F+LP++  
Sbjct: 125 FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQH 184

Query: 63  L------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGG 109
           +                 R   P  L+L PTRELA Q+     K+    N+  A L  G 
Sbjct: 185 ILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGR 244

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
             +  Q  +L  G  +LI TPGR++D   +G + +     LV+DEADRMLDMGF P I+ 
Sbjct: 245 ENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRK 304

Query: 170 IT---SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
           I          R T +FSAT   E+Q ++++FL++           +        +    
Sbjct: 305 IVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWVN 364

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           +  K+  L+ ++L ++ +    ++F   K+    L + L +Q     +IHG++ Q  R +
Sbjct: 365 EMEKRSNLM-EILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERER 423

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P  ++ Y+HRIGRTGR G  G A 
Sbjct: 424 NLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIAT 483

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           +    ++      ++ LI +    +   L  +
Sbjct: 484 SFFNDKNRGIGRDLKNLIVESNQEVPEWLHQV 515


>gi|17510309|ref|NP_491113.1| Vasa- and Belle-like Helicase family member (vbh-1) [Caenorhabditis
           elegans]
 gi|7332077|gb|AAF60764.1| Vasa- and belle-like helicase protein 1, isoform a, confirmed by
           transcript evidence [Caenorhabditis elegans]
          Length = 641

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 127/392 (32%), Positives = 200/392 (51%), Gaps = 17/392 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + G  P V+  V  +GY KPTP+Q  +IP +L   D+   AQTG+GKTA+F+LP++  
Sbjct: 122 FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQH 181

Query: 63  L------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGG 109
           +                 R   P  L+L PTRELA Q+     K+    N+  A L  G 
Sbjct: 182 ILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGR 241

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
             +  Q  +L  G  +LI TPGR++D   +G + +     LV+DEADRMLDMGF P I+ 
Sbjct: 242 ENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRK 301

Query: 170 IT---SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
           I          R T +FSAT   E+Q ++++FL++           +        +    
Sbjct: 302 IVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWVN 361

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           +  K+  L+ ++L ++ +    ++F   K+    L + L +Q     +IHG++ Q  R +
Sbjct: 362 EMEKRSNLM-EILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERER 420

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P  ++ Y+HRIGRTGR G  G A 
Sbjct: 421 NLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIAT 480

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           +    ++      ++ LI +    +   L  +
Sbjct: 481 SFFNDKNRGIGRDLKNLIVESNQEVPEWLHQV 512


>gi|330944943|gb|EGH46750.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 420

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 201/378 (53%), Gaps = 8/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 35  FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 94

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++ +    L +  G+ F  Q   LE 
Sbjct: 95  I---NPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 151

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 152 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTL 211

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F     R                    Y    ++       +  
Sbjct: 212 LFSATYPVGIKQLSSKF----MRDPQTVKVEALHADSQIEQIFYEISPEQRLEAVVKVLG 267

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 268 HFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 327

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 328 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 387

Query: 362 KLIEKKVDWLNGDLSSLN 379
           +L +  ++W   D  S+ 
Sbjct: 388 ELQKAPLNWQQYDRLSIK 405


>gi|302189857|ref|ZP_07266530.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. syringae
           642]
          Length = 459

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 201/378 (53%), Gaps = 8/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++ +    L +  G+ F  Q   LE 
Sbjct: 66  I---NPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F     R                    Y    ++       +  
Sbjct: 183 LFSATYPVGIKQLSSKF----MRDPQTVKVEALHADSQIEQIFYEISPEQRLEAVVKVLG 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 239 HFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 299 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 358

Query: 362 KLIEKKVDWLNGDLSSLN 379
           +L +  ++W   D  S+ 
Sbjct: 359 ELQKAPLNWQQYDRLSIK 376


>gi|255543463|ref|XP_002512794.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223547805|gb|EEF49297.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 514

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 102/398 (25%), Positives = 193/398 (48%), Gaps = 9/398 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           + F+   L  K++  +  AGY  PTP+Q++ IP  L    +   A TG+GKTAS+++P+ 
Sbjct: 120 LSFSSCNLPQKLLLNLEAAGYDLPTPVQMQAIPTALSGKSLLASADTGSGKTASYLVPII 179

Query: 60  --LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                     +  R P  ++L PTREL  QV D  + +GK      AL++GG     Q  
Sbjct: 180 SSCASYRLQHSSDRKPLAMVLTPTRELCIQVEDQAKLFGKGLPFKTALVVGGDAMAGQLY 239

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           ++++G ++++ TPGR++D   +  + ++N+ I VIDE D ML  GF   +          
Sbjct: 240 RIQQGVELIVGTPGRLIDLLTKHDIELDNMIIFVIDEVDCMLQRGFRDQV-MQIFWALSQ 298

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q LL+SAT+T E++K++ +  ++   + +  P+  ++ ++   +    +  K+      
Sbjct: 299 PQVLLYSATVTQEVEKMASSMAKDMALVSIGQPNRPSKAVKQLAIWVEPKQKKQKLFDIL 358

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + +        +   ++    +         G+   +IHG    + R +I+ +F  G + 
Sbjct: 359 MSKQHFMPPAVVYVGSRLGADLLSNAITVTTGWKSLSIHGEKSMKERREIMKSFLVGEVT 418

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+ +  RG+D+  V  V  FD+PN  + YIH+IGR  R G  G A   V +E+    
Sbjct: 419 VIVATGVLGRGVDLFGVRQVIIFDMPNSIKEYIHQIGRASRMGEGGIAIVFVNEENKNLF 478

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
               ++++     +  +L++      +  + +    RK
Sbjct: 479 PEFIEVLKSSAAVIPRELAN-----SRYSVGKGQKKRK 511


>gi|66043783|ref|YP_233624.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254490|gb|AAY35586.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Pseudomonas syringae pv. syringae B728a]
          Length = 473

 Score =  138 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 201/378 (53%), Gaps = 8/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 20  FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++ +    L +  G+ F  Q   LE 
Sbjct: 80  I---NPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 137 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F     R                    Y    ++       +  
Sbjct: 197 LFSATYPVGIKQLSSKF----MRDPQTVKVEALHADSQIEQIFYEISPEQRLEAVVKVLG 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 253 HFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 313 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 372

Query: 362 KLIEKKVDWLNGDLSSLN 379
           +L +  ++W   D  S+ 
Sbjct: 373 ELQKAPLNWQQYDRLSIK 390


>gi|320163650|gb|EFW40549.1| eukaryotic translation initiation factor 4A isoform 1B [Capsaspora
           owczarzaki ATCC 30864]
          Length = 419

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  + L   ++  +   G+ KP+ IQ + I   ++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 47  NFDAMNLREDLLRGIYAYGFEKPSAIQQRAILPAIKGHDVIAQAQSGTGKTATFSISVLQ 106

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     +   + LIL PTRELA Q+       G   N      IGG   +   KKL+ 
Sbjct: 107 SIDTS---IPHCQALILAPTRELAQQIQKVVIALGDYMNANCHACIGGTNVQEDMKKLQN 163

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ D  NR  L  + I++ V+DEAD ML  GF   I ++  L+P T Q +
Sbjct: 164 GAHIVVGTPGRVQDMINRRALRTDRIKMFVLDEADEMLSRGFKDQIYDVFRLMPPTIQVV 223

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+ +F++NP RI V     T + I   ++A   +  K   L       
Sbjct: 224 LLSATMPADVLEVTTHFMRNPIRILVKREELTLDGIRQFYIAVDKEEWKLDTLCDL--YE 281

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++ 
Sbjct: 282 TLNVTQAVIFTNTRRKVDWLTEKMHAKDFTVSALHGDMDQKERDVIMREFRSGSSRVLIT 341

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   +  +D + +  IE
Sbjct: 342 TDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFLTADDTRTLREIE 401

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 402 QFYNTQIEEMPMNVADL 418


>gi|242240212|ref|YP_002988393.1| ATP-dependent RNA helicase SrmB [Dickeya dadantii Ech703]
 gi|242132269|gb|ACS86571.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
          Length = 446

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 135/387 (34%), Positives = 206/387 (53%), Gaps = 6/387 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++  L   ++ A+ D G+ +PT IQ   IP  +   D+ G A TGTGKTA+++LP + 
Sbjct: 5   NFSEFDLDESLLEALNDMGFKRPTAIQAAAIPPAMDGRDILGSAPTGTGKTAAYLLPALQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD       + +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVADQARTLAAHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DV++ T GR+L +          +E L++DEADRMLDMGF   I++I     + +QT
Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT   + +Q  +E  L  P  +E +      + I+  +        K   L    L
Sbjct: 185 LLFSATLEGNAVQDFAERLLNEPVSVEADPSRRERKKIQQWYYRADNIEHKTALLC--HL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q  +   IIF  +++ V  L   L + G   C + G + Q  R + ++    G + ++
Sbjct: 243 LRQPDVTRSIIFVRKRERVHELVDWLRQAGIDACYLEGEMVQAKRNEAITRLSNGRVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI D+ HVFNFD+P  A+ Y+HRIGRTGRAGR G A +LV   D   +  
Sbjct: 303 VATDVAARGLDILDISHVFNFDMPRTADIYLHRIGRTGRAGRKGCAISLVEAHDHLLLGK 362

Query: 360 IEKLIEK--KVDWLNGDLSSLNPPLEK 384
           + + + +  K+  +     +   P EK
Sbjct: 363 VSRYLNEPLKMRVVEELRPTTRAPSEK 389


>gi|326318919|ref|YP_004236591.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323375755|gb|ADX48024.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 478

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 142/392 (36%), Positives = 208/392 (53%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL+P+V+  +   GY + TPIQ  ++P  L   D+   A TG+GKTA+F L +L  
Sbjct: 20  FDALGLAPEVLANLRQLGYERMTPIQAASLPPALLGRDLIAQASTGSGKTAAFGLALLER 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L     R    + L+L PTRELA QVA    +  +       + +  G+P   Q   LE 
Sbjct: 80  L---NPRRFAVQALVLCPTRELADQVASEIRRLARAQENIKVVTLCGGVPLRGQVASLEH 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR++DH  RG L +  +   V+DEADRMLDMGF   I  +    P TRQTL
Sbjct: 137 GAHVVVGTPGRVMDHLERGTLDLGALATFVLDEADRMLDMGFSEDIAQVARRCPDTRQTL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D +++++  F+++P+RI V    +  +         Y    ++       L +
Sbjct: 197 LFSATYPDGIERIARQFMKDPQRIAVQAQHAEGKI----EQRWYEVQERERLHAVSQLLN 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ I FCN K+   +L   L  QGFS  A+HG+++QR R ++L  F   +  ++VA
Sbjct: 253 HFRPESAIAFCNTKQQCRDLVEVLRAQGFSALALHGDLEQRDRDQVLVQFANRSCSVLVA 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI  +  V N DV    E +IHRIGRTGRA   G A +L +  ++  +  IE
Sbjct: 313 TDVAARGIDIAGLQAVINVDVAPDPEVHIHRIGRTGRADAEGLALSLASLPEMGQVGRIE 372

Query: 362 KLIEKKVDWL------NGDLSSLNPPLEKIDI 387
            L  +  +W             L PP+  I I
Sbjct: 373 VLQGRPSEWHPLSGLTPAPGGPLQPPMATIQI 404


>gi|109098826|ref|XP_001111246.1| PREDICTED: ATP-dependent RNA helicase DDX54 isoform 2 [Macaca
           mulatta]
          Length = 883

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 128/366 (34%), Positives = 195/366 (53%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 98  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 158 LKTHSAQTGA-RALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I + +P   QT+L
Sbjct: 217 PDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVL 276

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +   E ++  F     + +K   LL  L    
Sbjct: 277 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSF-FLVREDTKAAVLLHLLRNVV 335

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K +   L   L  Q  S   I+  +D  +R   L+ F  G    ++ +
Sbjct: 336 RPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSALIVT 395

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LV  ++I ++  +  
Sbjct: 396 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVVPDEIPYLLDLHL 455

Query: 363 LIEKKV 368
            + + +
Sbjct: 456 FLGRSL 461


>gi|296209197|ref|XP_002751433.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Callithrix
           jacchus]
          Length = 547

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 116/493 (23%), Positives = 208/493 (42%), Gaps = 41/493 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL P+++ AV D G+ +PT IQ K IPL L+  D+   A+TG+GKTA++ +PML +
Sbjct: 9   FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA-------Q 115
           L   +A   +    +         ++A   +   +      A  +      A       +
Sbjct: 69  LLHRKATGPVVEQAVRGLVLVPTKELARQAQCMIQQLATYCARDVRVANVSAAEDLASQR 128

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              +E+   ++      +         L +++E+LV+DEAD +   GF   ++++   +P
Sbjct: 129 AVLMEKPDVIVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q  L SAT  +++Q + E  L NP  +++             F         K  LL
Sbjct: 189 RIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL+        ++F N  +    L   LE+     C ++G +  RSR  I+S F +G 
Sbjct: 249 YTLLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGF 308

Query: 296 IQLMVASDLA---------------------------ARGLDIPDVGHVFNFDVPNRAEN 328
              ++A+D                             ARG+D   V  V NFD+P   E 
Sbjct: 309 YDCVIATDAEVLGAPVKGKRRGRGPKGDKASDLEAGVARGIDFHHVSAVLNFDLPPTPEA 368

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHR GRT RA   G   T V   +  H+  IE+L+    +     L      +E+I+  
Sbjct: 369 YIHRAGRTARANNPGIVLTFVLPTEQSHLGKIEELL--SGENRGPILLPYQFRMEEIEGF 426

Query: 389 QHNHARKNNPIPQKSTGFDR----RKKNYSSQKSHIPLKESEK-ISKLQQDIQENDADSL 443
           ++        + +++    R    +++   S+K     +++ + +  L+ D+  + A   
Sbjct: 427 RYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVK 486

Query: 444 GFRGNMPAFMLPK 456
              G++P +++P 
Sbjct: 487 PHLGHVPDYLVPP 499


>gi|227891108|ref|ZP_04008913.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
 gi|227866982|gb|EEJ74403.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
          Length = 440

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 116/365 (31%), Positives = 183/365 (50%), Gaps = 9/365 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +      +  A+ +  + +PT +Q + IP +L+   V G +QTG+GKT +F+LP+  
Sbjct: 3   NFREFNFKEYIYQALDEINFKEPTEVQARLIPTILKGKSVVGQSQTGSGKTHTFLLPIFQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE- 120
            L   +  V+     I  P+RELA Q+ +  ++  K     + +       + Q +  + 
Sbjct: 63  NLNAQKDEVQAV---ITTPSRELAYQIYEAAKQLAKFSPENIWIQNYVGGTDKQRQIEKL 119

Query: 121 --RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 ++I TPGRILD      L ++N   LV+DEAD  LD+GF+     I S +P   
Sbjct: 120 KSHQPQLVIGTPGRILDLVRENALDIHNAHYLVVDEADMTLDLGFLKETDAIASTLPKDL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+     ++ NP    V      + TI++  V+T  +   K       
Sbjct: 180 QMLVFSATIPEKLRPFLRKYMYNPVIEVVANKHVISPTIDNWLVSTKGRDRNKLIYDLL- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +       ++F N K+    L + L  QG  V  +HG I  R R +I+   +    Q 
Sbjct: 239 --TMGEPYLALVFANTKERADELTNYLRSQGLKVAKVHGGIQPRQRKRIMREIQNLDYQF 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N D+P   E ++HR+GRTGR G  G A TL    + K ID
Sbjct: 297 VVATDLAARGIDIEGVSHVINDDIPEDLEFFVHRVGRTGRNGMKGTAITLYEPSEEKLID 356

Query: 359 AIEKL 363
            +E +
Sbjct: 357 ELESM 361


>gi|224127806|ref|XP_002329182.1| predicted protein [Populus trichocarpa]
 gi|222870963|gb|EEF08094.1| predicted protein [Populus trichocarpa]
          Length = 531

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 106/388 (27%), Positives = 185/388 (47%), Gaps = 9/388 (2%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            FA+L    G    ++  ++  G+ +PTPIQ + IP++L   +    A TG+GKT +FV 
Sbjct: 130 SFAELSTRYGCESYLLHNLVKLGFKEPTPIQRQAIPVLLSGRECFAKAPTGSGKTLAFVY 189

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           PML  L++        RT+IL  TRELAAQ     +K  K     + L+   +       
Sbjct: 190 PMLMKLKQPSKDG--IRTVILCHTRELAAQTTRECKKMAKGSKFRIKLMTKELLRNTDFT 247

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL     +      ++     + K+ ++ +E LV+DE+D++ +   +    ++       
Sbjct: 248 KLPCDILISTPRRLQLCICKKKKKIDLSRVEYLVLDESDKLFERSLLEQTDSVVKACSNP 307

Query: 178 RQTLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
                 FSAT+   ++ V+   + +  RI V   ++ +E+I+   +   ++  K  AL Q
Sbjct: 308 SIIRSLFSATLPGFVEDVARTVMHDAVRIIVGDKNAASESIKQKLIFAGSEEGKLLALRQ 367

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
              +S +     +IF    +    L   L+     V  IH N+ Q  R  ++ +F+ G  
Sbjct: 368 SFAESLNPPM--LIFVQSIERAEELYGELKFDSIRVGVIHSNLSQEQRESVIDDFRAGKT 425

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+  RG+D   V  V N+D P+ A +YIHRIGR+GRAGR G+A T   + DI +
Sbjct: 426 WVLIATDVLGRGMDFKGVKCVINYDFPDCAASYIHRIGRSGRAGRIGEAITFYTEHDIPY 485

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
           +  I  ++      +   L+ +     K
Sbjct: 486 LRNIANVMTASGCEVPSWLTDMPKKKWK 513


>gi|119471950|ref|ZP_01614235.1| ATP-dependent RNA helicase, DEAD box family protein
           [Alteromonadales bacterium TW-7]
 gi|119445208|gb|EAW26499.1| ATP-dependent RNA helicase, DEAD box family protein
           [Alteromonadales bacterium TW-7]
          Length = 440

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 122/403 (30%), Positives = 194/403 (48%), Gaps = 8/403 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLG+  ++   +   G  +PT IQ   +P  L  HD+   ++TG+GKT +F+LP +
Sbjct: 1   MHFTDLGIDTRLETQLAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAV 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + K +A   R PR LI+ PTRELA QV            +    ++GG  F  Q K L
Sbjct: 61  QRVMKQKALSKRDPRVLIVAPTRELATQVFTQLRLLIAGTAIKAVKVLGGENFNDQIKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                 ++ TPGR+ DH  +  L ++ +E+L+ DEADR+LD+GF   ++ I        +
Sbjct: 121 RNDPQFVVATPGRLADHVTKRSLQLSGLELLIFDEADRILDLGFTEQLKLINDEANHRLR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  Q  + +     K  ++   ++  +  +       A +      L    
Sbjct: 181 QTLLFSATLDHAQVDALSRNLLKKPKQITLSAANEQHSDITQTLYLADHLDHKEALLAHF 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             QD +   IIF   + +   L   L  +GF   A+ G++ Q  R+ I+ +F  G  +++
Sbjct: 241 LKQDEVGQCIIFTATRADTSRLSEELNNKGFKSVALAGDLTQSKRLDIMDSFSRGNFKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+A+RGLD+  V HV NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D     A
Sbjct: 301 ITTDVASRGLDLLSVTHVINFDLPKHAEEYVHRIGRTGRAGFKGTAISLVGPKDWASYLA 360

Query: 360 IEKLIE-----KKVDWLNGDLSSL--NPPLEKIDIAQHNHARK 395
           I+  +        +D L      +    P   +   +  H +K
Sbjct: 361 IKSFLNDELKFATIDGLKAKFKGIKEKKPAATVKAKKVTHVKK 403


>gi|301779842|ref|XP_002925338.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Ailuropoda
           melanoleuca]
          Length = 863

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 129/366 (35%), Positives = 198/366 (54%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F++PM   
Sbjct: 85  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFER 144

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R L+L PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 145 LKTRSAQTGA-RALVLSPTRELALQTMKFTKELGKFTGLRTALILGGDKMEDQFAALHEN 203

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I S +P   QT+L
Sbjct: 204 PDIIIATPGRLVHVAVEMNLRLQSVEYVVFDEADRLFEMGFAEQLQEIISRLPGGHQTVL 263

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +   E ++  F     + +K   LL  L    
Sbjct: 264 FSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSF-FLVREDTKAAVLLHLLRTVV 322

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K +   L   L  QG S   I+  +DQ +R   L+ F  G    ++ +
Sbjct: 323 RPQDQTVVFVATKHHAEYLSELLTTQGVSCTHIYSALDQTARKINLAKFTHGKCSTLIVT 382

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA +++ ++  +  
Sbjct: 383 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHL 442

Query: 363 LIEKKV 368
            + + +
Sbjct: 443 FLGRAL 448


>gi|281343478|gb|EFB19062.1| hypothetical protein PANDA_014817 [Ailuropoda melanoleuca]
          Length = 819

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 129/366 (35%), Positives = 198/366 (54%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F++PM   
Sbjct: 41  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFER 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R L+L PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 101 LKTRSAQTGA-RALVLSPTRELALQTMKFTKELGKFTGLRTALILGGDKMEDQFAALHEN 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I S +P   QT+L
Sbjct: 160 PDIIIATPGRLVHVAVEMNLRLQSVEYVVFDEADRLFEMGFAEQLQEIISRLPGGHQTVL 219

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +   E ++  F     + +K   LL  L    
Sbjct: 220 FSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSF-FLVREDTKAAVLLHLLRTVV 278

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K +   L   L  QG S   I+  +DQ +R   L+ F  G    ++ +
Sbjct: 279 RPQDQTVVFVATKHHAEYLSELLTTQGVSCTHIYSALDQTARKINLAKFTHGKCSTLIVT 338

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA +++ ++  +  
Sbjct: 339 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHL 398

Query: 363 LIEKKV 368
            + + +
Sbjct: 399 FLGRAL 404


>gi|240281206|gb|EER44709.1| ATP-dependent RNA helicase DED1 [Ajellomyces capsulatus H143]
 gi|325092298|gb|EGC45608.1| ATP-dependent RNA helicase DED1 [Ajellomyces capsulatus H88]
          Length = 694

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 130/393 (33%), Positives = 205/393 (52%), Gaps = 19/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  ++ A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 205 FTNPPLHEHLLSNIVLARYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQ 264

Query: 63  LEK------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                          GR +   P  LIL PTREL +Q+ D   K+     L   ++ GG 
Sbjct: 265 SLHTRGPEAEAARGLGRQQKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVYGGA 324

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L++G +VL+ TPGR++D   RG++ + +I+ LV+DEADRMLDMGF P I+ I
Sbjct: 325 EMGNQLRQLDQGCNVLVATPGRLVDMMERGRISLAHIQYLVLDEADRMLDMGFEPQIRRI 384

Query: 171 TSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                   + +    +FSAT   ++QK++E FL++   + V    ST+E           
Sbjct: 385 VQGSDMPDKHMRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSEN--ITQRIVEC 442

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           +  K        +   D+    ++F   K+    L   L        AIHG+  QR R +
Sbjct: 443 ESDKDKDSALLDILCSDSTGLTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERER 502

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G   ++VA+ +AARGLDIP+V HV N+D+PN  ++Y+HRIGRTGRAG  G + 
Sbjct: 503 ALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGIST 562

Query: 347 TLVAK-EDIKHIDAIEKLIEKKVDWLNGDLSSL 378
              ++ ++ K   ++  L++     +   L  L
Sbjct: 563 AFFSRSKNFKIARSLVDLLKDANQEVPDFLEKL 595


>gi|225562366|gb|EEH10645.1| ATP-dependent RNA helicase DED1 [Ajellomyces capsulatus G186AR]
          Length = 694

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 130/393 (33%), Positives = 205/393 (52%), Gaps = 19/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  ++ A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 205 FTNPPLHEHLLSNIVLARYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQ 264

Query: 63  LEK------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                          GR +   P  LIL PTREL +Q+ D   K+     L   ++ GG 
Sbjct: 265 SLHTRGPEAEAARGLGRQQKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVYGGA 324

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L++G +VL+ TPGR++D   RG++ + +I+ LV+DEADRMLDMGF P I+ I
Sbjct: 325 EMGNQLRQLDQGCNVLVATPGRLVDMMERGRISLAHIQYLVLDEADRMLDMGFEPQIRRI 384

Query: 171 TSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                   + +    +FSAT   ++QK++E FL++   + V    ST+E           
Sbjct: 385 VQGSDMPDKHMRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSEN--ITQRIVEC 442

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           +  K        +   D+    ++F   K+    L   L        AIHG+  QR R +
Sbjct: 443 ESDKDKDSALLDILCSDSTGLTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERER 502

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G   ++VA+ +AARGLDIP+V HV N+D+PN  ++Y+HRIGRTGRAG  G + 
Sbjct: 503 ALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGIST 562

Query: 347 TLVAK-EDIKHIDAIEKLIEKKVDWLNGDLSSL 378
              ++ ++ K   ++  L++     +   L  L
Sbjct: 563 AFFSRSKNFKIARSLVDLLKDANQEVPDFLEKL 595


>gi|154279136|ref|XP_001540381.1| ATP-dependent RNA helicase ded1 [Ajellomyces capsulatus NAm1]
 gi|160380637|sp|A6R3L3|DED1_AJECN RecName: Full=ATP-dependent RNA helicase DED1
 gi|150412324|gb|EDN07711.1| ATP-dependent RNA helicase ded1 [Ajellomyces capsulatus NAm1]
          Length = 694

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 130/393 (33%), Positives = 205/393 (52%), Gaps = 19/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L   ++  ++ A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L+ 
Sbjct: 205 FTNPPLHEHLLSNIVLARYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQ 264

Query: 63  LEK------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                          GR +   P  LIL PTREL +Q+ D   K+     L   ++ GG 
Sbjct: 265 SLHTRGPEAEAARGLGRQQKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVYGGA 324

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L++G +VL+ TPGR++D   RG++ + +I+ LV+DEADRMLDMGF P I+ I
Sbjct: 325 EMGNQLRQLDQGCNVLVATPGRLVDMMERGRISLAHIQYLVLDEADRMLDMGFEPQIRRI 384

Query: 171 TSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                   + +    +FSAT   ++QK++E FL++   + V    ST+E           
Sbjct: 385 VQGSDMPDKHMRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSEN--ITQRIVEC 442

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           +  K        +   D+    ++F   K+    L   L        AIHG+  QR R +
Sbjct: 443 ESDKDKDSALLDILCSDSTGLTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERER 502

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G   ++VA+ +AARGLDIP+V HV N+D+PN  ++Y+HRIGRTGRAG  G + 
Sbjct: 503 ALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGIST 562

Query: 347 TLVAK-EDIKHIDAIEKLIEKKVDWLNGDLSSL 378
              ++ ++ K   ++  L++     +   L  L
Sbjct: 563 AFFSRSKNFKIARSLVDLLKDANQEVPDFLEKL 595


>gi|269138721|ref|YP_003295422.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|267984382|gb|ACY84211.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|304558724|gb|ADM41388.1| ATP-dependent RNA helicase DbpA [Edwardsiella tarda FL6-60]
          Length = 457

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 134/373 (35%), Positives = 209/373 (56%), Gaps = 9/373 (2%)

Query: 2   DFADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            FA+L  L  + +  + + GY   TP+Q  T+P +L   DV   A+TG+GKTA+F L +L
Sbjct: 3   SFAELNALPEEQLNNLNELGYQTMTPVQAATLPAILAGKDVRAQAKTGSGKTAAFGLGLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++  R    + ++L+L PTRELA QVA    K  +       L + G +PF AQ   L
Sbjct: 63  QHIDANR---FITQSLVLCPTRELADQVATALRKLARYMPNIKVLTLCGGVPFGAQRDSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGR+LDH  +  + +  ++ L++DEADRMLDMGF   +  + S  P  RQ
Sbjct: 120 IHAPHVIVATPGRLLDHLKKETVSLEALQTLILDEADRMLDMGFADALDEVISWAPEKRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   E+  +S    ++P  IE++T        +  +  +          L Q L
Sbjct: 180 TLLFSATWPAEIAAISRRIQRDPLTIEIDTHGELPAVEQRFYEVSRGGK----VGLLQTL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            SQ    + ++FCN KK+   +  +LE    SV A+HG+++QR R + L  F  G+ +++
Sbjct: 236 LSQYQPASCVVFCNTKKDCQAVYDALEGSEQSVLALHGDMEQRDRDQTLVRFANGSSRVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +L A E+ +  +A
Sbjct: 296 VATDVAARGLDIKALEMVINYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRANA 355

Query: 360 IEKLIEKKVDWLN 372
           +E+++  ++ W  
Sbjct: 356 LEEMLGARLQWQP 368


>gi|213409157|ref|XP_002175349.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28
           [Schizosaccharomyces japonicus yFS275]
 gi|212003396|gb|EEB09056.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28
           [Schizosaccharomyces japonicus yFS275]
          Length = 672

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 125/415 (30%), Positives = 214/415 (51%), Gaps = 35/415 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ +  L  KV   +    Y +P+ IQ   IPL+LQR+D+ GIA+TG+GKTA+FV+P++T
Sbjct: 257 NWEESSLPEKVQATLKKVKYKEPSAIQRAAIPLLLQRNDIIGIAETGSGKTAAFVIPLVT 316

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + +            P  +IL PTRELA Q+     K+ +   L    ++GG  FE Q+
Sbjct: 317 HISRLPALDDTNMHLGPYAIILAPTRELAQQIQVEASKFSEPLGLRCVAVVGGHAFEEQS 376

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT----- 171
            ++ +GA +++ TPGR++D   R   +++    +V+DEADRM+DMGF   +         
Sbjct: 377 FQMSQGAHIVVATPGRLVDCLERRVFVLSQCYFVVMDEADRMVDMGFEEDVNKALTSLPP 436

Query: 172 ------------------SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
                             +     RQT++FSAT+   ++ +++ +L  P  + + T    
Sbjct: 437 SGHDDDEAMVAGEDLLRSTRPTRARQTVMFSATLPTRVENLAKRYLNKPIMLTIGTIGQA 496

Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            + +    V   A  +K+   L+++L +       ++F N K+N  +L  +L   G+ V 
Sbjct: 497 VDRV-EQRVEMIADDAKRRKRLEEILNTNRYAPPIVVFVNLKRNCESLAKALYNMGWRVV 555

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            +HG+  Q  R + +   +  +  ++VA+DLA RG+DIP+V  V N+++    E+Y HRI
Sbjct: 556 TLHGSKSQEQRERAIEQLRNHSADILVATDLAGRGIDIPNVSLVVNYNMAKSIEDYTHRI 615

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           GRTGRAG+HG A T +  ED      +  ++ K  +      S +   L + + A
Sbjct: 616 GRTGRAGKHGTAITFLGPEDTGVYYDLRLMLSKSAN------SHIPEELRRHEAA 664


>gi|169859713|ref|XP_001836494.1| ATP-dependent RNA helicase DBP5 [Coprinopsis cinerea okayama7#130]
 gi|116502412|gb|EAU85307.1| ATP-dependent RNA helicase DBP5 [Coprinopsis cinerea okayama7#130]
          Length = 466

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 96/401 (23%), Positives = 166/401 (41%), Gaps = 21/401 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +LGL+  ++  + D G+ KP+ IQ + +PL+L     ++ G +Q+GTGKTA+FVL M
Sbjct: 66  TFEELGLAEDLLKGIYDMGFSKPSKIQERALPLLLANPPTNMIGQSQSGTGKTAAFVLTM 125

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++    +   P+ + L P+RELA Q+       GK  ++     I        +   
Sbjct: 126 LSRIDYNLHK---PQAICLAPSRELARQIMSVVITMGKYTSVQTEYAIKDNLPRDASNIT 182

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +       T   ++         +    +   D       +G              T+ 
Sbjct: 183 AQIIVGNPGTMIDLMRRKVLDTTHVKVFVLDEADNMLDQDGLGDQTLRVKNLLPKNPTQP 242

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             +   + T      S      PK  ++                   +  +    +   L
Sbjct: 243 IQIILFSATFPDHVRSFANKFAPKANKIELQKEELSVDSIRQFYMDCKNEEHKYDILVQL 302

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S  T+   IIFC  +     +   +  +G  V ++HG  +   R  I+  F+EG  +++
Sbjct: 303 YSLLTIGQSIIFCKHRHTADRISQRMTAEGHKVASLHGAKNANERDAIIDRFREGKEKVL 362

Query: 300 VASDLAARGLDIPDVGHVFNFDVP--------------NRAENYIHRIGRTGRAGRHGKA 345
           + +++ ARG+DI  V  V N+D+P                 E YIHRIGRTGR GR G +
Sbjct: 363 ITTNVIARGIDILQVNMVVNYDLPLMNDRGPASGNDSRPDIETYIHRIGRTGRFGRKGIS 422

Query: 346 FTLV-AKEDIKHIDAIEKLIEKKVDWLN-GDLSSLNPPLEK 384
              V  K+    +DAIEK + +K+  +   DL  +   ++K
Sbjct: 423 INFVHDKQTWLQMDAIEKALGRKIVRIETNDLDEMEETMKK 463


>gi|119112278|ref|XP_311683.3| AGAP003397-PA [Anopheles gambiae str. PEST]
 gi|116129870|gb|EAA07398.3| AGAP003397-PA [Anopheles gambiae str. PEST]
          Length = 425

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 102/393 (25%), Positives = 172/393 (43%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  L L P+++  V   G+  P+ IQ   +P +L     ++   +Q+GTGKTA+FVL M
Sbjct: 39  SFEALHLKPELLQGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 98

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++    R   P+ + L PT ELA Q  +   K  K                 + KK+
Sbjct: 99  LSRVDP---RKPYPQVICLSPTYELAIQTGEVAAKMAKFCKEIKLRFAVRGEELPKGKKI 155

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             R   L      ++ +    +   G       I   +  + Q
Sbjct: 156 TDHIIIGTPGKLMDWGIKFRAFDLRKISVFVLDEADVMIATQGHQDQCIRIHKQLSSSCQ 215

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSAT   E+ + +E  + NP  I +     + + I+  +V    Q  K        +
Sbjct: 216 MMFFSATYEKEVMEFAEYIVPNPIIIRLAREQESLDNIKQYYVKCKNQDEKY--QAISNI 273

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   IIFC+ +K    L   + + G SV  + G +    R+ +L  F+ G  +++
Sbjct: 274 YGVITVGQAIIFCHTRKTAGWLSGKMTQDGHSVAVLSGELTVEQRLAVLDRFRAGLEKVL 333

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           + +++ +RG+D+  V  V NFD+P         E Y+HRIGRTGR G++G A  LV +  
Sbjct: 334 ITTNVLSRGIDVEQVTIVVNFDLPMDQSGRADCETYLHRIGRTGRFGKNGIAINLVDSDH 393

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
            ++    IE   +KK+  L+ + S     +EKI
Sbjct: 394 SMEICRTIEAHFQKKIQLLDAENSD---EIEKI 423


>gi|242064428|ref|XP_002453503.1| hypothetical protein SORBIDRAFT_04g006980 [Sorghum bicolor]
 gi|241933334|gb|EES06479.1| hypothetical protein SORBIDRAFT_04g006980 [Sorghum bicolor]
          Length = 539

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 101/381 (26%), Positives = 188/381 (49%), Gaps = 5/381 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+  GL  K+V  +  AGY  PTP+Q++ IP  +    +   A TG+GKTASF++P++
Sbjct: 137 MCFSACGLPEKLVHNLETAGYCMPTPVQMQVIPASMSNRSLLVSADTGSGKTASFLIPII 196

Query: 61  TILEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               + R++     + P  ++L PTREL  QV +  +  GK      AL++GG P   Q 
Sbjct: 197 AHCSQVRSQESTSNQGPLAIVLAPTRELCLQVEEQAKVLGKGLPFKTALVVGGDPLPQQI 256

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            ++E G ++++ TPGR++D   +  + +  + + V+DE D +L+ GF             
Sbjct: 257 YRIENGIELIVGTPGRLIDLLMKHNVDLTYVSVFVLDEVDCLLERGFRD-QAMQIFQSLS 315

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q ++FSAT+  E++K+S +  +N   I    P+   ++++   +   ++  K+     
Sbjct: 316 QPQVMMFSATLHSEVEKMSNSLAKNVISISCGNPNRPTKSVKQVVIWVESKKKKQKIFEI 375

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
              +        +   ++    +         G  V +IHG    + R + L  F  G +
Sbjct: 376 MKSKQHFKPPAVVFVSSRVGADLLSEAITVATGLEVVSIHGEKTMKERRENLRRFLTGEV 435

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++V++ +  RG+D+  V  V  FD+PN  + YIH++GR  R G  G A   V +ED + 
Sbjct: 436 SVVVSTGVLGRGMDLLKVRQVILFDIPNSIDEYIHQVGRASRMGEEGMAVVFVNEEDRRI 495

Query: 357 IDAIEKLIEKKVDWLNGDLSS 377
              + ++++     +  +L++
Sbjct: 496 FKELVQVLKTAGAPIPRELAN 516


>gi|91227047|ref|ZP_01261584.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
 gi|91188849|gb|EAS75135.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
          Length = 416

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 141/417 (33%), Positives = 224/417 (53%), Gaps = 16/417 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            FADLGL P +V  +    Y +PTPIQ ++IP +L+  D+ G A TG+GKTA+F LP   
Sbjct: 9   TFADLGLIPTLVERLEALEYSQPTPIQSRSIPDILEGKDIIGGANTGSGKTAAFSLPILQ 68

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV--ALLIGGIPFEAQ 115
            ++   E    R      LIL PTRELA+QVA N + Y  +    +    + GG+    Q
Sbjct: 69  KIVQQDESNNRRGNFVSHLILVPTRELASQVAYNVKSYSYHLRDKIKTVAVFGGVSVNPQ 128

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G D+++ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  I +L+P
Sbjct: 129 MLALRGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILALLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +QTLLFSAT  D++  +++  L++P  +++ +  ++        V    + +    L+
Sbjct: 189 EKKQTLLFSATFPDKVTTLAQQLLRDPVEVQLQSAEASTLVQRVFSVNKGEKTAVLAHLI 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q        +  +IF N K    +L   L K+G +    HG+  Q +R ++L  FK G 
Sbjct: 249 KQHQW-----RQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKSGE 303

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           IQ+++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G   +L+  +D  
Sbjct: 304 IQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDDYH 363

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           H   IEK  + +++        +   +E      +    K    P   TG  ++K+N
Sbjct: 364 HFKVIEKKNKFQLER----EQVVGFEVEDDQSEAYFLPMKPRAKPA-GTGKKKKKRN 415


>gi|30682500|ref|NP_196478.2| DEAD box RNA helicase (RH26) [Arabidopsis thaliana]
 gi|109893654|sp|Q9FNM7|RH26_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 26
 gi|332003946|gb|AED91329.1| DEAD-box ATP-dependent RNA helicase 26 [Arabidopsis thaliana]
          Length = 850

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 126/476 (26%), Positives = 211/476 (44%), Gaps = 31/476 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F    LSP  + A+ DAG+   T +Q  T+P++LQ  DV   A+TGTGKT +F+LP    
Sbjct: 384 FDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEA 443

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF--EAQ 115
            + +      +R      L++ PTRELA+Q A       K +      ++ G       Q
Sbjct: 444 VIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQ 503

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIE---ILVIDEADRMLDMGFIPYIQNITS 172
            +       +L+ TPGR+ DH          +    +LV+DEAD +LDMGF   I+ I +
Sbjct: 504 RRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIA 563

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY----AQY 228
            VP  RQT LFSAT+ +E++++    L+            + ET +            ++
Sbjct: 564 AVPKQRQTFLFSATVPEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMIASLDRH 623

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
                +L +   + +     IIFC        +   L +   +V  IH    Q  R ++ 
Sbjct: 624 FSLLHVLLKEHIADNVDYKVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVS 683

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             F++    ++V SD++ARG+D PDV  V    +P+  E YIHR+GRTGR G+ G+   L
Sbjct: 684 DEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLL 743

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           +A  +   + +++ L   K         S  PP++   + +         +  K   +  
Sbjct: 744 LAPWEEYFMSSVKDLPITK---------SPLPPIDPEAVKRVQKGLSQVEMKNKEAAYQA 794

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
               Y SQK  +  +++ ++ +L  +   +         + P  +     GK+  K
Sbjct: 795 WLGYYKSQK--MIARDTTRLVELANEFSRS------MGLDSPPAIPKNVLGKMGLK 842


>gi|76253275|emb|CAH61467.1| Pl10-related protein [Rana lessonae]
          Length = 687

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 132/396 (33%), Positives = 211/396 (53%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ +   ++  +    Y +PTP+Q   IP+++ + D+   AQTG+GKTA+F+LP+L+
Sbjct: 224 SFHDVNMGEIIMGNIQLTRYTRPTPVQKHAIPIIIDKRDLMACAQTGSGKTAAFLLPILS 283

Query: 62  ILE---------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
            +                +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 284 QIYADGPGDAMKHLKDNGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSKVRPCVV 343

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 344 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQ 403

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      RQT++FSAT   E+Q ++ +FL+    + V    ST+E I    V
Sbjct: 404 IRRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVV 463

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK    L   L  +G++  +IHG+  QR
Sbjct: 464 WVEEMDKRSFLLDLLNATGKDSL--TLVFVETKKGADALEDFLYHEGYACTSIHGDRSQR 521

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 522 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 581

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   +++I     +  L+ +    +   L ++
Sbjct: 582 GLATSFFNEKNINITKDLLDLLVEAKQEVPSWLENM 617


>gi|45360981|ref|NP_989127.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19B [Xenopus (Silurana)
           tropicalis]
 gi|38511935|gb|AAH61342.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19 [Xenopus (Silurana)
           tropicalis]
 gi|89272120|emb|CAJ82182.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19 [Xenopus (Silurana)
           tropicalis]
          Length = 487

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 104/392 (26%), Positives = 184/392 (46%), Gaps = 15/392 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ--RHDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 102 SFEELRLKPELLKGVYAMGFNRPSKIQENALPMMLAEPSQNLIAQSQSGTGKTAAFVLAM 161

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++      + P+ L L PT ELA Q     E+ G+  N+ +A  + G     + +K+
Sbjct: 162 LSRVDPAN---KYPQCLCLSPTYELALQTGKVIEQMGQFSNIKLAYAVRGK-KLERGQKI 217

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             R          ++ +    +   G       I  ++P   Q
Sbjct: 218 PEHIVIGTPGTVLDWCSKLRFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQKMLPRDCQ 277

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  + + + ++  +  P  I++     T +TI+  +V  +++  K  AL    +
Sbjct: 278 MLLFSATFEESVWRFAQKVVPEPNIIKLKREEETLDTIKQYYVECHSREDKFRALC--NI 335

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 336 YGSITIAQAMIFCHTRKTASWLAGELYKEGHQVALLSGEMMVEQRAAVIDRFREGKEKVL 395

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V    
Sbjct: 396 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAINMVDGDH 455

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
            ++ +  I++   KK+  L+ D       + K
Sbjct: 456 SMQILQRIQQHFSKKIAQLDTDDMDEIEKISK 487


>gi|9759355|dbj|BAB10010.1| RNA helicase-like protein [Arabidopsis thaliana]
          Length = 827

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 126/476 (26%), Positives = 211/476 (44%), Gaps = 31/476 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F    LSP  + A+ DAG+   T +Q  T+P++LQ  DV   A+TGTGKT +F+LP    
Sbjct: 361 FDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEA 420

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF--EAQ 115
            + +      +R      L++ PTRELA+Q A       K +      ++ G       Q
Sbjct: 421 VIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQ 480

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIE---ILVIDEADRMLDMGFIPYIQNITS 172
            +       +L+ TPGR+ DH          +    +LV+DEAD +LDMGF   I+ I +
Sbjct: 481 RRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIA 540

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY----AQY 228
            VP  RQT LFSAT+ +E++++    L+            + ET +            ++
Sbjct: 541 AVPKQRQTFLFSATVPEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMIASLDRH 600

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
                +L +   + +     IIFC        +   L +   +V  IH    Q  R ++ 
Sbjct: 601 FSLLHVLLKEHIADNVDYKVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVS 660

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             F++    ++V SD++ARG+D PDV  V    +P+  E YIHR+GRTGR G+ G+   L
Sbjct: 661 DEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLL 720

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           +A  +   + +++ L   K         S  PP++   + +         +  K   +  
Sbjct: 721 LAPWEEYFMSSVKDLPITK---------SPLPPIDPEAVKRVQKGLSQVEMKNKEAAYQA 771

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
               Y SQK  +  +++ ++ +L  +   +         + P  +     GK+  K
Sbjct: 772 WLGYYKSQK--MIARDTTRLVELANEFSRS------MGLDSPPAIPKNVLGKMGLK 819


>gi|322712774|gb|EFZ04347.1| ATP-dependent RNA helicase HAS1 [Metarhizium anisopliae ARSEF 23]
          Length = 581

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 114/390 (29%), Positives = 198/390 (50%), Gaps = 7/390 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS K + A+ + G+ K T IQ   IP +L   DV G A+TG+GKT +F++P + I
Sbjct: 106 FDQLKLSEKTMKAITEMGFTKMTAIQRTAIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEI 165

Query: 63  LEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   R + R    +I+  PTRELA Q+     +  ++++ T  ++IGG   +A+ +KL +
Sbjct: 166 LSALRFKPRNGTGVIVVSPTRELALQIFGVARELMQHHSQTYGIVIGGANRKAEAEKLSK 225

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G ++LI TPGR+LDH      +  N++ LVIDEADR+L++GF   I+ I  ++    +  
Sbjct: 226 GVNLLIATPGRLLDHLLNTPFVFKNLKSLVIDEADRILEVGFEDEIRQIVKVLSNDDRQT 285

Query: 182 L-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQL 238
           + FSAT T +++ ++   L+               T++             +   L   L
Sbjct: 286 MLFSATQTTKVEDLARISLRPGPLYINVDEEKQFSTVDGLEQGYVLCDADKRFILLFSFL 345

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++ ++  K  I+F +   +V      L      V  +HG   Q+ R      F      +
Sbjct: 346 MRMKEKKKKVIVFFSSCNSVKYYSELLNYIDCPVLDLHGKQKQQKRTNTFFEFSNAEHGI 405

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R A   G++   +   ++  +
Sbjct: 406 LICTDVAARGLDIPAVDFIVQFDPPDNTRDYIHRVGRTARGANTKGRSLLFLQPNEVGFL 465

Query: 358 DAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
             ++  ++   + ++    + ++   LEK+
Sbjct: 466 SHLKTARVPVVEFEFPAKHIKNVQSNLEKL 495


>gi|294631256|ref|ZP_06709816.1| ATP-dependent RNA helicase DeaD [Streptomyces sp. e14]
 gi|292834589|gb|EFF92938.1| ATP-dependent RNA helicase DeaD [Streptomyces sp. e14]
          Length = 960

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 132/374 (35%), Positives = 205/374 (54%), Gaps = 10/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+ P+   A+   G   P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L 
Sbjct: 60  TFRELGILPETAEALEAVGITTPFPIQEMTLPVALTGTDVIGQAKTGTGKTLGFGLPLLE 119

Query: 62  ILEKGRAR----------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
            +                   P+ L++ PTREL  QV ++    GK  N+ V  + GG  
Sbjct: 120 RVTVPADVEAGRAKPEALTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVVAIYGGRA 179

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q + L+ G DV++ TPGR+LD   + KL + +++ LV+DEAD MLD+GF+P ++ I 
Sbjct: 180 YEPQVEALKNGVDVVVGTPGRLLDLAGQKKLNLKHVKALVLDEADEMLDLGFLPDVEKII 239

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            ++P  RQT+LFSATM   +  ++  ++  P  I    P     T+ +     Y  ++  
Sbjct: 240 GMLPAKRQTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANTTQFIYRAHNMD 299

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              +   +   +     +IFC  K+   +L   L+++GF+  A+HG++ Q +R + L  F
Sbjct: 300 KPEMVARILQAEGRGLAMIFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAF 359

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAG  G A TLV  
Sbjct: 360 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLVDW 419

Query: 352 EDIKHIDAIEKLIE 365
           +DI     I K ++
Sbjct: 420 DDIPRWQLINKALD 433


>gi|227432082|ref|ZP_03914095.1| ATP-dependent RNA helicase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352164|gb|EEJ42377.1| ATP-dependent RNA helicase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 454

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 133/438 (30%), Positives = 214/438 (48%), Gaps = 18/438 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L  +V+ A+   G+ +PT +Q K IP VLQ  DV G +QTG+GKT +F++P+L 
Sbjct: 7   QFGQFNLKKEVIDALSAIGFYEPTAVQAKLIPDVLQGRDVVGQSQTGSGKTHTFLIPILN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNKK 118
            LE+ +  V+     I  P+RELAAQ+    +++    N  +++              + 
Sbjct: 67  QLEQDKKYVQAV---ITTPSRELAAQITKAMKEFSNQLNTDISISEFVGGTDKQRQIKQL 123

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +   ++I TPGRI D    G L ++ +  LV+DEAD  LDMGF+  +  I   +P   
Sbjct: 124 ENQQPQIVIGTPGRIKDLVESGSLKLHAVHTLVVDEADMTLDMGFLNEVDYIAGAMPEGL 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSATM ++L+   + +L NP    +   +  A+TI        A  SK    +   
Sbjct: 184 QTLVFSATMPEKLKPFLKKYLDNPHFEAIPVSTVIADTI---DNWLLATKSKDKNDIIYQ 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           + +       ++F N K+    +   L   G  V  IHG+I+ R R +++   +    Q 
Sbjct: 241 VLTIGNPYLALVFANTKERAKEISSFLRGHGLKVTEIHGDIEPRERRRVMKAIQNLEYQY 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N D+P   E ++HR+GRTGR G  G A TL   ++   + 
Sbjct: 301 VVATDLAARGIDIEGVSHVINDDIPAELEFFVHRVGRTGRNGLPGLAITLYGPDEENEVA 360

Query: 359 AIEKL-IEKKVDWLNG----DLSSLNPPLEKIDIAQH----NHARKNNPIPQKSTGFDRR 409
            +E L I  K   + G    D+      ++++   +                   G+ RR
Sbjct: 361 ELEALGITFKAKQIKGNEIIDVKDRRARVQRVATTKKLDSTMVGMVKKKKKNVKPGYKRR 420

Query: 410 KKNYSSQKSHIPLKESEK 427
            KN   +K+ +  + S++
Sbjct: 421 IKNAIQRKNQMDRRISQR 438


>gi|145299222|ref|YP_001142063.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851994|gb|ABO90315.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 463

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 171/441 (38%), Positives = 261/441 (59%), Gaps = 20/441 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLSP ++ AV + GY +PTPIQ + IP VL   DV G AQTGTGKTA F LPML
Sbjct: 1   MSFNELGLSPHILRAVKELGYEQPTPIQQQAIPAVLAGQDVLGGAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L     R   R  R L+L PTRELAAQV ++  KY  +      +  GG+  +   + 
Sbjct: 61  HRLMANHGRGGRRQVRALVLTPTRELAAQVGESIIKYAHHLPFRTLIAYGGVSIKPNLEA 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++ G D+L+ TPGR+LD   +  L +  +E+LV+DEADRMLDMGFI  I+ I   +P  R
Sbjct: 121 IKLGVDILVATPGRLLDLLTQRALTLTELEVLVLDEADRMLDMGFITDIRRIMKALPEER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT ++E+++++++ L++P  IEV+  +STAE +    +    +  ++       
Sbjct: 181 QTLLFSATFSNEIKELADDLLKSPTLIEVSPSNSTAEQVNQRIIKVDRERKREL---LSH 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  ++  +  ++F   K+    L H +EK G +  AIHG+  Q +R + L++F+EG +++
Sbjct: 238 MIGRNNWQRVLVFVRTKQIADRLAHQMEKDGLNTVAIHGDKSQGARNRALADFREGKVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV NF++P  AE+YIHRIGRTGRAGR G+A +LV++++   + 
Sbjct: 298 LVATDIAARGLDIDQLPHVINFELPQVAEDYIHRIGRTGRAGRGGEAISLVSQDEQDQLK 357

Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQ----------HNHARKNNPIPQKSTGF 406
           AIE LI   +  + L G   S  P  + +  ++          H +A+ N   P K +  
Sbjct: 358 AIESLIGLSIPSEILAGYEPSGKPTRQTLPGSKPVQNPPRDRGHANAKHNAKAPAKGS-- 415

Query: 407 DRRKKNYSSQKSHIPLKESEK 427
            + K      K   P ++ ++
Sbjct: 416 -KGKPKADGSKQPAPARQKDR 435


>gi|120402790|ref|YP_952619.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955608|gb|ABM12613.1| DEAD/DEAH box helicase domain protein [Mycobacterium vanbaalenii
           PYR-1]
          Length = 494

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 139/372 (37%), Positives = 210/372 (56%), Gaps = 9/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LG+  ++V A+ + G      IQ  T+PL L   D+ G A+TG GKT +F +P+L 
Sbjct: 11  TFAQLGVRDEIVRALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLH 70

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGIPFE 113
            +     R    +PR LI+ PTREL  QV ++     K          TV  + GG P+E
Sbjct: 71  RITTDTERPLTGIPRALIVVPTRELCIQVYEDLVGASKYLMADETRKLTVTAIYGGRPYE 130

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L++G DV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+ I   
Sbjct: 131 PQIEALQKGVDVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILKQ 190

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ +LFSATM D +  ++  F+  P  I    P S+A        A  A    K  
Sbjct: 191 IPAKRQAMLFSATMPDPIITLARTFMTQPTHIRAEAPHSSATHDSTEQFAYRAHALDKVE 250

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           ++ ++LQ++      I     K+    +   L ++GF V A+HG++ Q +R K L +F+ 
Sbjct: 251 MVARILQAEGRGATMIFT-RTKRTAQKVADELGERGFKVGAVHGDLGQAAREKALKSFRT 309

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G + ++VA+D+AARG+DI D+ HV NF +P   + Y+HRIGRTGRAG+ G A TLV  ++
Sbjct: 310 GEVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTLVDWDE 369

Query: 354 IKHIDAIEKLIE 365
           +     I+K + 
Sbjct: 370 LPRWSMIDKALG 381


>gi|46125837|ref|XP_387472.1| hypothetical protein FG07296.1 [Gibberella zeae PH-1]
 gi|91206552|sp|Q4I662|DBP8_GIBZE RecName: Full=ATP-dependent RNA helicase DBP8
          Length = 547

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 113/433 (26%), Positives = 198/433 (45%), Gaps = 17/433 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L + P +V ++ +    +PT IQ   IP +L+  D  G ++TG+GKT +F +P+L 
Sbjct: 117 TFSALDVRPWLVQSLENMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTMAFAVPILQ 176

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +    +      +L PTRELA Q+ + F+      +L   L+ GG     Q  ++ +
Sbjct: 177 KWSEDPTAIFAV---VLTPTRELALQIFEQFKAISSPQSLKAILVTGGSDMRTQAIEIGK 233

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILV--------IDEADRMLDMGFIPYIQNITSL 173
              V+I TPGR+ DH              V            +       +P ++   S+
Sbjct: 234 RPHVIIATPGRLADHIRTSGEDTICGLRRVRYVVLDEADRLLNATGPGSMLPDVEECLSV 293

Query: 174 VPFTRQTLL--FSATMTDELQ----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           +P   +     F+AT+T E++       +   Q     EV+T +                
Sbjct: 294 LPPATERQTLLFTATITPEVRALKDMPIKPGKQPVFVCEVDTQTLAIPATLKQMYIKVPV 353

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             K+  L   LL   +  K  I+FCN+      L H L      V ++H  + QR R+  
Sbjct: 354 THKEHYLHTFLLTEANVDKTVILFCNRTSTADYLHHLLRMLEHRVTSLHSKLPQRQRIDN 413

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L+ F+    +++VA+D+AARGLDIP+V  V N+D+P   ++YIHR+GRT RAGR G+A +
Sbjct: 414 LARFRASAARILVATDVAARGLDIPEVSLVINYDLPRDPDDYIHRVGRTARAGRKGEAVS 473

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
            V + D++    IEK + + ++    +  +L   + +  +   +  ++   +  +     
Sbjct: 474 FVGQRDVELALTIEKRVGRDMEAWEEEGVNLETRVVRDALKLVSEKKREALLEVEEGREV 533

Query: 408 RRKKNYSSQKSHI 420
             K+  + QK  +
Sbjct: 534 GGKRKRTKQKLRV 546


>gi|291437415|ref|ZP_06576805.1| helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291340310|gb|EFE67266.1| helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 463

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 134/374 (35%), Positives = 209/374 (55%), Gaps = 10/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+ P+   A+   G + P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L 
Sbjct: 4   TFRELGILPETAEALEAVGIITPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLE 63

Query: 62  ILE----------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
            +           K       P+ L++ PTREL  QV ++    GK  N+ V  + GG  
Sbjct: 64  RVTVPVDVEAGRAKPEDLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVTAIYGGRA 123

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q + L++G DV++ TPGR+LD   + KL + +++ LV+DEAD MLD+GF+P ++ I 
Sbjct: 124 YEPQVEALKKGVDVVVGTPGRLLDLAGQKKLNLAHVKALVLDEADEMLDLGFLPDVEKII 183

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +L+P  RQT+LFSATM   +  ++  ++  P  I    P     T+ +     Y  ++  
Sbjct: 184 NLLPVRRQTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANTKQFVYRAHNMD 243

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              +   +   +     ++FC  K+   +L   L+++GF+  A+HG++ Q +R + L  F
Sbjct: 244 KPEMVARILQAEGRGLAMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAF 303

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAG  G A TLV  
Sbjct: 304 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLVDW 363

Query: 352 EDIKHIDAIEKLIE 365
           +DI     I K +E
Sbjct: 364 DDIPRWQLINKALE 377


>gi|195330913|ref|XP_002032147.1| GM26397 [Drosophila sechellia]
 gi|194121090|gb|EDW43133.1| GM26397 [Drosophila sechellia]
          Length = 680

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 113/392 (28%), Positives = 200/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L   +S   + A+ + G+ + T IQ K++  +L+  D+ G AQTG+GKT +F++P 
Sbjct: 186 SFASLKGAVSEATLRAIKEMGFTEMTEIQAKSLTPLLKGRDLVGAAQTGSGKTLAFLIPA 245

Query: 60  LTILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K R   R     +I+ PTREL+ Q     ++   +++ T  L++GG   + +++K
Sbjct: 246 VELINKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEK 305

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G ++L+ TPGR +    N    L  N++ L+IDE DR+L++GF   ++ I +L+P  
Sbjct: 306 LGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKR 365

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T  ++ +S+  L++         +    T++          S+K  L+  
Sbjct: 366 RQTMLFSATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLF 425

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V             V +IHG   Q  R      F      
Sbjct: 426 TFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESG 485

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
           +++ +D+AARGLDIP V  +  +D P+    YIHR+GRT R  G  G A  L+  E++  
Sbjct: 486 ILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELGF 545

Query: 357 IDAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
           +  + K  +  ++        ++ +   LEK+
Sbjct: 546 LRYL-KAAKVPLNEFEFSWQKIADIQLQLEKL 576


>gi|309778667|ref|ZP_07673444.1| ATP-independent RNA helicase DbpA [Ralstonia sp. 5_7_47FAA]
 gi|308922582|gb|EFP68202.1| ATP-independent RNA helicase DbpA [Ralstonia sp. 5_7_47FAA]
          Length = 471

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 141/405 (34%), Positives = 203/405 (50%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P V+  +   GY   TPIQ  ++P+ L  HD+   A+TG+GKTA+F    L +
Sbjct: 16  FSTLALAPAVLTNLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFA---LAL 72

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L +  AR    + ++L PTRELA QVA    +  +       L +  G P   Q   LE 
Sbjct: 73  LARLDARSFDVQAMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEH 132

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI+DH  RG L +  ++ LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 133 GAHVIVGTPGRIMDHLERGNLGLGALKTLVLDEADRMLDMGFFDDIATVVRQCPADRQTL 192

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K      Q   R                    Y     +       L  
Sbjct: 193 LFSATYPEGIAK----LSQRILRNPKEVKLEERHDDSKIRQRFYEVTDSQRLHAVGQLLR 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FCN K+   +L   L  QG    A+HG ++QR R ++L  F   +  ++VA
Sbjct: 249 HYRPVSTLAFCNTKQQCRDLLDVLRAQGIHALALHGELEQRERDQVLIQFANRSCSVLVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N DV    E ++HRIGRTGRA  +G A +L + +++  +  IE
Sbjct: 309 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADENGWALSLASMDEMGRVGNIE 368

Query: 362 KLIEKKVDWLNGDL------SSLNPPLEKIDIAQHNHARKNNPIP 400
           + + ++V+W   D       + L PP+E + I      RK    P
Sbjct: 369 QALGREVEWHKLDELDTGNDAPLLPPMETLQIL---GGRKEKIRP 410


>gi|299822903|ref|ZP_07054789.1| DEAD/DEAH box family ATP-dependent RNA helicase [Listeria grayi DSM
           20601]
 gi|299816432|gb|EFI83670.1| DEAD/DEAH box family ATP-dependent RNA helicase [Listeria grayi DSM
           20601]
          Length = 435

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 123/422 (29%), Positives = 203/422 (48%), Gaps = 10/422 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G  P +  A+   G+ +PT +Q K IP +++   + G +QTGTGKT +F+LP++  
Sbjct: 7   FDQFGFQPFINKAIHKIGFYEPTEVQQKLIPGIMRGESIIGQSQTGTGKTHTFLLPLINK 66

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNKKLE 120
           ++  +  +++    I  P+RELA Q+ +   K  +      +  LLIGG   +    KL+
Sbjct: 67  IDPEKHEIQIV---ITAPSRELATQIYNEARKITEESEQPISTRLLIGGTDKQRMLDKLK 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++I TPGRI D      L +   + LVIDEAD  LDMGF+  +  I   +P   Q 
Sbjct: 124 TQPHIIIGTPGRINDMIREKALAVYTAKALVIDEADMALDMGFLNDVDAIAGKMPPNLQM 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+ ++L+   + +++NP+   +        +         A  S+    L +   
Sbjct: 184 LVFSATIPEKLKPFLKKYMENPRYEHIQPKVV---SSTAVTHTLLASKSRDKIDLLKEAL 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +      GI+F N K+    +   L ++G  V  IHG++  R R + +   +    Q +V
Sbjct: 241 TIFQPFLGIVFTNTKQTADEVAAGLTERGLKVAKIHGDVSPRERKRTMKQVENMDYQYIV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI  + HV NF++P+  + YIHR GRTGRAG  G A T+    D   +  +
Sbjct: 301 ATDLAARGIDIQGISHVINFELPDDLDFYIHRTGRTGRAGHSGIALTIYDPADEDKLAQL 360

Query: 361 EK--LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           EK  +  + +    G    +     +              I  +     +RK NY  + +
Sbjct: 361 EKKGITFQHMTIKKGAFVEVEDRNRRDKREAKRETADPREIGMRKKAKQKRKPNYKKKIN 420

Query: 419 HI 420
           + 
Sbjct: 421 YK 422


>gi|226365826|ref|YP_002783609.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
 gi|226244316|dbj|BAH54664.1| putative ATP-dependent RNA helicase [Rhodococcus opacus B4]
          Length = 534

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 152/441 (34%), Positives = 233/441 (52%), Gaps = 23/441 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+  +VV A+ + G  +   IQ  T+PL L   D+ G A+TG GKT  F +P+L 
Sbjct: 39  TFAELGVRDEVVRALDEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLH 98

Query: 62  ILEKGRARVR----MPRTLILEPTRELAAQVADNFEKYGKNYNLTVA------LLIGGIP 111
            +  G          PR L++ PTREL  QV  + E   K              + GG P
Sbjct: 99  RISSGTTGTAALDGTPRALVIVPTRELCIQVTKDLEGAAKYLKGEKNKPLEVLAIYGGRP 158

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q   L++GADV++ TPGR+LD  N+G L++  +E+LV+DEAD MLD+GF+P I+ I 
Sbjct: 159 YETQIATLQKGADVVVGTPGRLLDLANQGHLILGKVEVLVLDEADEMLDLGFLPDIERIL 218

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           ++VP  RQT+LFSATM   +  ++  FL  P  I       +A           A    K
Sbjct: 219 NMVPDKRQTMLFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHIYRAHALDK 278

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             ++ ++LQ+       I    + +    +   L ++GF+V ++HG+++Q +R K L  F
Sbjct: 279 AEMVARVLQADGRGATMIFTRTK-RTAQKVSDELAERGFAVGSVHGDLNQVAREKALKAF 337

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G I ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G A TLV  
Sbjct: 338 RSGKIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAVTLVDW 397

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           +DI     I+K +   +            P+E    + H +  +   IP ++TG  +R +
Sbjct: 398 DDIPRWQLIDKALGLGI----------PDPVETYSSSPHLY--EELSIPAEATGTIKRPR 445

Query: 412 NYSSQKSHIPLKESEKISKLQ 432
              +  +     ++E   K +
Sbjct: 446 VEKAAPAQSEDADTENGEKAE 466


>gi|165934071|gb|ABY74563.1| DEAD box polypeptide 18 (predicted) [Callithrix jacchus]
          Length = 623

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 120/392 (30%), Positives = 200/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L   ++   + A+ + G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 131 SFASLSNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPA 190

Query: 60  LTILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K +   R    + IL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 191 VELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK 250

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 251 LANGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTR 310

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T++          S+K  LL  
Sbjct: 311 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLF 370

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 371 TFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSG 430

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
            ++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 431 TLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELG 489

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + D+    +S +   LEK+
Sbjct: 490 FLRYLKQSKVPLSEFDFSWSKISDIQSQLEKL 521


>gi|125546083|gb|EAY92222.1| hypothetical protein OsI_13943 [Oryza sativa Indica Group]
          Length = 591

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 108/396 (27%), Positives = 196/396 (49%), Gaps = 11/396 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LG+S     A+ +  Y   T IQ ++IP +L   DV G A+TG+GKT +F++P +
Sbjct: 97  MLFSELGVSEPTARAIREMNYTYLTQIQARSIPHLLNGKDVMGAAKTGSGKTLAFLIPAI 156

Query: 61  TILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L       R     +++ PTRELA Q  +  ++  K ++ T+  +IGG     +  +L
Sbjct: 157 EMLHHAHFMPRNGTGVVVVCPTRELAIQTHNVAKELMKYHSQTLGYIIGGNGRRGEADQL 216

Query: 120 ERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +G ++L+ TPGR +    N    +   ++ L+IDEADR+L+  F   ++ I   +P  R
Sbjct: 217 AKGVNLLVATPGRLLDHLQNTKGFIYRRLKCLIIDEADRLLEQNFEEDMKQIFKRLPLNR 276

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC------FVATYAQYSKKC 232
           QT+LFSAT T+++++ ++   +  +           +  E                S + 
Sbjct: 277 QTVLFSATQTEQVKEFAKLSFEKNEESTSKPVYVGVDDAETNATVEGLQQGYCVIDSARR 336

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L+      +   K  ++F +   +V      L         IHG   Q+ R     NF 
Sbjct: 337 FLVLYAFLKKKQNKKVMVFFSSCNSVKFHAELLNFLQIECSDIHGKQKQQKRTTTFFNFC 396

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAK 351
           +    +++ +++AARGLDIPDV  +  +D P+  ++YIHR+GRT R  +  G+A   +  
Sbjct: 397 KAEKGILLCTNVAARGLDIPDVDFIVQYDPPDEPKDYIHRVGRTARGEKGKGEALLFLLP 456

Query: 352 EDIKHIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
           +++K +  ++  K+   ++ +    + +L   LE I
Sbjct: 457 QELKFLIYLKAAKISLTELVFNENKVPNLQSHLENI 492


>gi|75328082|sp|Q84T03|RH27_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 27
 gi|29150366|gb|AAO72375.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|108711610|gb|ABF99405.1| ATP-dependent RNA helicase C1F7.02c, putative, expressed [Oryza
           sativa Japonica Group]
 gi|125588287|gb|EAZ28951.1| hypothetical protein OsJ_12997 [Oryza sativa Japonica Group]
          Length = 590

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 108/396 (27%), Positives = 196/396 (49%), Gaps = 11/396 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++LG+S     A+ +  Y   T IQ ++IP +L   DV G A+TG+GKT +F++P +
Sbjct: 96  MLFSELGVSEPTARAIREMNYTYLTQIQARSIPHLLNGKDVMGAAKTGSGKTLAFLIPAI 155

Query: 61  TILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L       R     +++ PTRELA Q  +  ++  K ++ T+  +IGG     +  +L
Sbjct: 156 EMLHHAHFMPRNGTGVVVVCPTRELAIQTHNVAKELMKYHSQTLGYIIGGNGRRGEADQL 215

Query: 120 ERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +G ++L+ TPGR +    N    +   ++ L+IDEADR+L+  F   ++ I   +P  R
Sbjct: 216 AKGVNLLVATPGRLLDHLQNTKGFIYRRLKCLIIDEADRLLEQNFEEDMKQIFKRLPLNR 275

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC------FVATYAQYSKKC 232
           QT+LFSAT T+++++ ++   +  +           +  E                S + 
Sbjct: 276 QTVLFSATQTEQVKEFAKLSFEKNEESTSKPVYVGVDDAETNATVEGLQQGYCVIDSARR 335

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L+      +   K  ++F +   +V      L         IHG   Q+ R     NF 
Sbjct: 336 FLVLYAFLKKKQNKKVMVFFSSCNSVKFHAELLNFLQIECSDIHGKQKQQKRTTTFFNFC 395

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAK 351
           +    +++ +++AARGLDIPDV  +  +D P+  ++YIHR+GRT R  +  G+A   +  
Sbjct: 396 KAEKGILLCTNVAARGLDIPDVDFIVQYDPPDEPKDYIHRVGRTARGEKGKGEALLFLLP 455

Query: 352 EDIKHIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
           +++K +  ++  K+   ++ +    + +L   LE I
Sbjct: 456 QELKFLIYLKAAKISLTELVFNENKVPNLQSHLENI 491


>gi|251789631|ref|YP_003004352.1| ATP-dependent RNA helicase DbpA [Dickeya zeae Ech1591]
 gi|247538252|gb|ACT06873.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
          Length = 457

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 134/373 (35%), Positives = 210/373 (56%), Gaps = 9/373 (2%)

Query: 2   DFADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            FA+L  L    +  + + GY+  TPIQ   +P +L   DV   A+TG+GKTA+F L +L
Sbjct: 3   SFAELNALPAAQLTTLNELGYLTMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             L+ GR   +    L+L PTRELA QVA+   +  +       L + G +PF  Q   L
Sbjct: 63  QHLDAGRFNTQS---LVLCPTRELADQVANELRRLARGMPNIKVLTLCGGVPFGLQRDSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V++ TPGR+LDH  +  + ++++  LV+DEADRMLDMGF   I  + + VP   Q
Sbjct: 120 THAPHVIVATPGRLLDHLKKETVSLDDLRTLVLDEADRMLDMGFADAIDEVIAQVPTPCQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  + +  +S    ++P  IE++T     + +       Y         L Q L
Sbjct: 180 TLLFSATWPEAIAAISRRIQRDPLIIEIDTV----DELPAVEQQFYEVSRSGKLDLLQKL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S++   + ++FCN KK+   +  +L     SV A+HG+++QR R + L  F  G+ +++
Sbjct: 236 LSREQPASCVVFCNTKKDCQAVYEALTNSNQSVLALHGDMEQRDRDQTLVRFANGSSRVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +L A E+ +  +A
Sbjct: 296 VATDVAARGLDIKALEMVINYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRANA 355

Query: 360 IEKLIEKKVDWLN 372
           +E++++ K++W  
Sbjct: 356 LEEMLKMKLNWHP 368


>gi|164655062|ref|XP_001728662.1| hypothetical protein MGL_4141 [Malassezia globosa CBS 7966]
 gi|159102545|gb|EDP41448.1| hypothetical protein MGL_4141 [Malassezia globosa CBS 7966]
          Length = 623

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 129/398 (32%), Positives = 206/398 (51%), Gaps = 8/398 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  +   ++ A+   GY +PT IQ + IP+ L   D+ G+A+TG+GKTASFV+PML 
Sbjct: 228 TWRESRIPGAILDAIEAMGYREPTSIQRQAIPIGLIPRDLIGLAETGSGKTASFVVPMLA 287

Query: 62  ILEKGRAR-----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +              P  LIL PTRELA Q+     K+     + V  L+GG     Q 
Sbjct: 288 YVMAQPRMAPGDVYMGPYGLILAPTRELALQIEAETRKFAARLQIQVVSLVGGRDLGEQA 347

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GA+++I TPGR+ D   R  L++     LV+DEADRM+DM +   +  I   +P 
Sbjct: 348 FHLNDGAEIVIATPGRLQDCLERHMLVLGQCHYLVMDEADRMVDMNYEEALHYILDSLPT 407

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           TR T+L+SATM   + K++  +L  P  + +        TIE C     ++  +      
Sbjct: 408 TRTTMLYSATMPPTVDKIARTYLTRPVTVTIGQAGQAVGTIEQCVEFVDSEEDR--QQRL 465

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             +         I+F NQK N   +   L + G++V  +H  + Q  R   +++ ++G  
Sbjct: 466 LHVLDSGFAPPMIVFVNQKANADLVGKDLRRAGWNVAVLHSGLSQPQREAAIASLRDGYN 525

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +++  +D+ ARG+D+PDV  V N+  P +  +YIHRIGRTGRAG+ G A + V  +D +H
Sbjct: 526 EVLCCTDIGARGIDLPDVSLVVNYQFPTQFASYIHRIGRTGRAGKKGHAMSFVNDDDAQH 585

Query: 357 IDAIE-KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
             A+  +L +  V  + G L++ +  L+      H +A
Sbjct: 586 FYALRLELAKSPVSSVPGALANHSAALQAPSQTGHANA 623


>gi|71734717|ref|YP_272808.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555270|gb|AAZ34481.1| ATP-independent RNA helicase DbpA [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 479

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 201/378 (53%), Gaps = 8/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 26  FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++ +    L +  G+ F  Q   LE 
Sbjct: 86  I---NPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 143 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTL 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F     R                    Y    ++       +  
Sbjct: 203 LFSATYPVGIKQLSSKF----MRDPQTVKVEALHADSQIDQIFYEISPEQRLEAVVKVLG 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 259 HFRPASCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 319 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 378

Query: 362 KLIEKKVDWLNGDLSSLN 379
           +L +  ++W   D  S+ 
Sbjct: 379 ELQKAPLNWQQYDQLSIK 396


>gi|320036991|gb|EFW18929.1| ATP-dependent RNA helicase SUB2 [Coccidioides posadasii str.
           Silveira]
          Length = 443

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 152/373 (40%), Gaps = 5/373 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q   IP  + + DV   A++G GKTA FVL  L  
Sbjct: 62  FRDFLLKPELLRAITDCGFEHPSEVQQVCIPTAILKVDVLCQAKSGLGKTAVFVLTTLNQ 121

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                G   + +         +        +         +           E  + K  
Sbjct: 122 LEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIEVLSSKDT 181

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+            +   L N    ++ +    +  +     +Q I    P  +Q 
Sbjct: 182 YPNIVVGTPGRLNALVREKKLSLRNIKAFVLDECDKMLDQIDMRRDVQEIFRSTPADKQV 241

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ E++ + + F++NP  + V+  +         +    ++  K   L +    
Sbjct: 242 MMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEAEKNRKLNEL--L 299

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF         L   L +  F   A+H  + Q  R+K    FKE   ++ V
Sbjct: 300 DNLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICV 359

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           A+D+  RG+DI  +    N+D+P  A++Y+HR+GR GR G  G + + V +++D+K +  
Sbjct: 360 ATDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRFGTKGLSISFVSSEDDMKTLKD 419

Query: 360 IEKLIEKKVDWLN 372
           IEK  E  +    
Sbjct: 420 IEKRFEVALPEYP 432


>gi|301300913|ref|ZP_07207085.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851512|gb|EFK79224.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 440

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 115/365 (31%), Positives = 184/365 (50%), Gaps = 9/365 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +      +  A+ +  + +PT +Q + IP +L+   V G +QTG+GKT +F+LP+  
Sbjct: 3   NFREFNFKEYIYQALDEINFKEPTEVQARLIPTILKGKSVVGQSQTGSGKTHTFLLPIFQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE- 120
            L   +  V+     I  P+RELA Q+ +  ++  K  +  + +       + Q +  + 
Sbjct: 63  NLNAQKDEVQAV---ITTPSRELAYQIYEAAKQLAKFSSENIWIQNYVGGTDKQRQIEKL 119

Query: 121 --RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 ++I TPGRILD      L ++N   LV+DEAD  LD+GF+     I S +P   
Sbjct: 120 KSHQPQLVIGTPGRILDLVRENALDIHNAHYLVVDEADMTLDLGFLKETDAIASTLPKDL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+     ++ NP    V      + TI++  ++T  +   K       
Sbjct: 180 QMLVFSATIPEKLRPFLRKYMYNPVIEVVANKHVISPTIDNWLISTKGRDRNKLIYDLL- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +       ++F N K+    L + L  QG  V  +HG I  R R +I+   +    Q 
Sbjct: 239 --TMGEPYLALVFANTKERADELTNYLRSQGLKVAKVHGGIQPRQRKRIMREIQNLDYQF 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N D+P   E ++HR+GRTGR G  G A TL    + K ID
Sbjct: 297 VVATDLAARGIDIEGVSHVINDDIPEDLEFFVHRVGRTGRNGMKGTAITLYEPSEEKLID 356

Query: 359 AIEKL 363
            +E +
Sbjct: 357 ELESM 361


>gi|302772815|ref|XP_002969825.1| hypothetical protein SELMODRAFT_146823 [Selaginella moellendorffii]
 gi|300162336|gb|EFJ28949.1| hypothetical protein SELMODRAFT_146823 [Selaginella moellendorffii]
          Length = 428

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 95/376 (25%), Positives = 157/376 (41%), Gaps = 3/376 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P++V A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 49  FRDFLLKPELVRAIVDCGFEHPSEVQFECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 108

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E  + +V                   + F  Y  +  + V      I       K E  
Sbjct: 109 IEPLKGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKTHKDLLKNECP 168

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +     +   L      ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 169 HIVVGTPGRILQLTREKELSLKGVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMM 228

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  I V+  +              ++  K        L   
Sbjct: 229 FSATLSKEIRPVCKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNR--KLNDLLDA 286

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L +  F    IH  + Q  R+     FKEG  +++VA+
Sbjct: 287 LDFNQVVIFVKSVNRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVAT 346

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           DL  RG+DI  V  V N+D+P  A+ Y+HR+GR GR G  G A T VA   D   ++ ++
Sbjct: 347 DLVGRGIDIERVNIVINYDMPESADTYLHRVGRAGRFGTKGLAITFVASSTDSNVLNQVQ 406

Query: 362 KLIEKKVDWLNGDLSS 377
           +  E  +  L   + +
Sbjct: 407 ERFEVDIKELPEQIDT 422


>gi|302806860|ref|XP_002985161.1| hypothetical protein SELMODRAFT_446187 [Selaginella moellendorffii]
 gi|300146989|gb|EFJ13655.1| hypothetical protein SELMODRAFT_446187 [Selaginella moellendorffii]
          Length = 473

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 95/376 (25%), Positives = 157/376 (41%), Gaps = 3/376 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P++V A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 49  FRDFLLKPELVRAIVDCGFEHPSEVQFECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 108

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E  + +V                   + F  Y  +  + V      I       K E  
Sbjct: 109 IEPLKGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKTHKDLLKNECP 168

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +     +   L      ++ +    +  +     +Q I  L P  +Q ++
Sbjct: 169 HIVVGTPGRILQLTREKELSLKGVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMM 228

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  I V+  +              ++  K        L   
Sbjct: 229 FSATLSKEIRPVCKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNR--KLNDLLDA 286

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L +  F    IH  + Q  R+     FKEG  +++VA+
Sbjct: 287 LDFNQVVIFVKSVNRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVAT 346

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           DL  RG+DI  V  V N+D+P  A+ Y+HR+GR GR G  G A T VA   D   ++ ++
Sbjct: 347 DLVGRGIDIERVNIVINYDMPESADTYLHRVGRAGRFGTKGLAITFVASSTDSNVLNQVQ 406

Query: 362 KLIEKKVDWLNGDLSS 377
           +  E  +  L   + +
Sbjct: 407 ERFEVDIKELPEQIDT 422


>gi|327482576|gb|AEA85886.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri DSM 4166]
          Length = 460

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 139/405 (34%), Positives = 214/405 (52%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LS  ++  +   GY   TPIQ +++PL+L+ HD+   A+TG+GKTA+F + +L  
Sbjct: 6   FSTLPLSAAMLANLEALGYATMTPIQAQSLPLMLKGHDLIAQAKTGSGKTAAFGIALLDP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L     R    + L+L PTRELA QVA    +  +  +    L +  G+    Q   LE 
Sbjct: 66  L---NPRYFGCQALVLCPTRELADQVAKELRRLARAADNIKILTLCGGVSIGPQIASLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR+ +H  +G L ++ +  LV+DEADRMLDMGF   I  I    P  RQTL
Sbjct: 123 GAHVIVGTPGRVQEHLKKGTLKLDGLNTLVLDEADRMLDMGFYDAIAEIIGQTPAKRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++ +F     R        +  T        Y    ++       L +
Sbjct: 183 LFSATYPASIEQLAASF----MRAPQQVRVESLHTDSQIEQRFYEIDPEQRLDAVARLLA 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ + FC  K+    L   L  +G S  A++G+++QR R ++L+ F   ++ ++VA
Sbjct: 239 SFRPESCVAFCFTKQQCQELVEYLNAKGISAAALNGDLEQRDRDQVLAMFANRSLSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++    E ++HRIGRTGRAG  G A +LVA  +     AIE
Sbjct: 299 TDVAARGLDIDALDMVINVELARDPEIHVHRIGRTGRAGNQGLAASLVAPAEAHRAQAIE 358

Query: 362 KLIEKKVDWLNGDL------SSLNPPLEKIDIAQHNHARKNNPIP 400
           KL +  ++W + D       + L PP+  + IA     RK+   P
Sbjct: 359 KLQKSPLNWHSLDELKAGAGAPLQPPMVTLCIAA---GRKDKLRP 400


>gi|302686080|ref|XP_003032720.1| hypothetical protein SCHCODRAFT_67353 [Schizophyllum commune H4-8]
 gi|300106414|gb|EFI97817.1| hypothetical protein SCHCODRAFT_67353 [Schizophyllum commune H4-8]
          Length = 652

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 128/401 (31%), Positives = 199/401 (49%), Gaps = 23/401 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           ++F +  L P ++  +  A Y  PTP+Q  +IP+V    D+   AQTG+GKT  F+ P+ 
Sbjct: 163 LEFTNPPLDPVLLENIAMAHYTTPTPVQKYSIPIVANNRDLMACAQTGSGKTGGFLFPIL 222

Query: 60  ------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                             GR R   P  L+L PTREL +Q+ +   K+     +   ++ 
Sbjct: 223 SASFAAGPAPTPDQGASYGRQRKAYPTALVLAPTRELVSQIHEEARKFAYRSWVRPCVVY 282

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG D+L  TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P I
Sbjct: 283 GGADIGQQLRTLERGCDLLSATPGRLVDLIERGRISLANIKYLVLDEADRMLDMGFEPQI 342

Query: 168 QNITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I               +FSAT   ++Q ++++FL++   + V    ST+E I      
Sbjct: 343 RRIVQGEDMPGVHERQTLMFSATFPRDIQLLAKDFLKDYIFLSVGRVGSTSENITQKIEF 402

Query: 224 TYAQYSKKC------ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                 +        A         + M   ++F   K+    LC  L        +IHG
Sbjct: 403 VEDPDKRSVLLDILSANQAPAANGGNGMGLTLVFVETKRMADGLCDFLLSHRMPATSIHG 462

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           +  QR R   L+ F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTG
Sbjct: 463 DRTQREREMALNTFRSGRTPILVATAVAARGLDIPNVTHVVNYDLPGDIDDYVHRIGRTG 522

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           RAG  G +     + +   +  + +L+ +    +   L S+
Sbjct: 523 RAGNTGVSTAFFNRSNRNIVRELVELLREANQEVPQWLESV 563


>gi|297560235|ref|YP_003679209.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844683|gb|ADH66703.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 489

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 124/388 (31%), Positives = 201/388 (51%), Gaps = 7/388 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +  ++   +   G   P+ IQ  T+P  L   DV G +QTG+GKT +F L +L  
Sbjct: 62  FEDLEMPAQLKSTLARQGLTTPSAIQAATLPNSLAGRDVLGRSQTGSGKTLAFGLALLAR 121

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE   A  R P  ++L PTRELA QV D+   Y ++  +    ++GG+P   Q++ L +G
Sbjct: 122 LEGRVAEPRRPLAVVLAPTRELAQQVNDSLAPYARSLRVRTTTVVGGMPISRQSRALRQG 181

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            ++++ TPGR+ D   R   +++ +++ V+DEAD+M DMGF+P +  I + VP   Q +L
Sbjct: 182 VELVVATPGRLRDLMERDDCVLDQVDVTVLDEADQMTDMGFMPQVTAILTEVPTGGQRML 241

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   FL +P    V+       T+EH  +       +  A         
Sbjct: 242 FSATLDRNVDTLVRRFLNDPVVHSVDPSEGAVSTMEHHVLHVSHADKQDAATRIA----- 296

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F + K  V  +   L   G     +HG   Q  R + L  FKEGT+  +VA+
Sbjct: 297 ARDGQVILFLDTKHAVDRMAKHLLNSGVRAAPLHGGRSQPQRTRTLKQFKEGTVTALVAT 356

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           ++AARG+ +  +  V N D P   ++Y+HR GRT RAG+ G   TLV   + + +D + +
Sbjct: 357 NVAARGIHVDGLDLVVNIDPPTDHKDYLHRGGRTARAGQTGSVVTLVLPSERRDMDRLMR 416

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           L   ++D     +S+ +P L ++  A+ 
Sbjct: 417 L--ARIDAHVAQVSASDPELARVTGARE 442


>gi|146284217|ref|YP_001174370.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri A1501]
 gi|145572422|gb|ABP81528.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri A1501]
          Length = 512

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 139/405 (34%), Positives = 214/405 (52%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LS  ++  +   GY   TPIQ +++PL+L+ HD+   A+TG+GKTA+F + +L  
Sbjct: 58  FSTLPLSAAMLANLEALGYATMTPIQAQSLPLMLKGHDLIAQAKTGSGKTAAFGIALLDP 117

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L     R    + L+L PTRELA QVA    +  +  +    L +  G+    Q   LE 
Sbjct: 118 L---NPRYFGCQALVLCPTRELADQVAKELRRLARAADNIKILTLCGGVSIGPQIASLEH 174

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR+ +H  +G L ++ +  LV+DEADRMLDMGF   I  I    P  RQTL
Sbjct: 175 GAHVIVGTPGRVQEHLKKGTLKLDGLNTLVLDEADRMLDMGFYDAIAEIIGQTPAKRQTL 234

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++ +F     R        +  T        Y    ++       L +
Sbjct: 235 LFSATYPASIEQLAASF----MRAPQQVRVESLHTDSQIEQRFYEIDPEQRLDAVARLLA 290

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ + FC  K+    L   L  +G S  A++G+++QR R ++L+ F   ++ ++VA
Sbjct: 291 SFRPESCVAFCFTKQQCQELVEYLNGKGISAAALNGDLEQRDRDQVLAMFANRSLSVLVA 350

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++    E ++HRIGRTGRAG  G A +LVA  +     AIE
Sbjct: 351 TDVAARGLDIDALDMVINVELARDPEIHVHRIGRTGRAGNQGLAASLVAPAEAHRAQAIE 410

Query: 362 KLIEKKVDWLNGDL------SSLNPPLEKIDIAQHNHARKNNPIP 400
           KL +  ++W + D       + L PP+  + IA     RK+   P
Sbjct: 411 KLQKSPLNWHSLDELKAGAGAPLQPPMVTLCIAA---GRKDKLRP 452


>gi|145603147|ref|XP_361955.2| hypothetical protein MGG_04400 [Magnaporthe oryzae 70-15]
 gi|152032534|sp|A4QVP2|IF4A_MAGO7 RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|145011448|gb|EDJ96104.1| hypothetical protein MGG_04400 [Magnaporthe oryzae 70-15]
          Length = 396

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L  +++  +   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 24  SFDEMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+  + LIL PTRELA Q+       G   N+     IGG       K L+ 
Sbjct: 84  KIDTN---VKQCQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVRDDMKALQD 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + +++ V+DEAD ML  GF   I +I  L+P + Q +
Sbjct: 141 GPQVVVGTPGRVHDMIQRRFLKTDGMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 201 LLSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A
Sbjct: 259 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 379 QFYSTQIEEMPMNVADL 395


>gi|157819755|ref|NP_001102328.1| hypothetical protein LOC364073 [Rattus norvegicus]
 gi|149040979|gb|EDL94936.1| rCG20177 [Rattus norvegicus]
          Length = 659

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 138/428 (32%), Positives = 215/428 (50%), Gaps = 29/428 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 179 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 238

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    K   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 239 QIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 298

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 299 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 358

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 359 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 418

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 419 WVEEADKRSFLLDLLNATGKDSLI--LVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 476

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 477 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 536

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH-NHARKNNPIPQ 401
           G A +   + +I     +       +D L      +   LE +    H     +     +
Sbjct: 537 GLATSFFNERNINITKDL-------LDLLVEAKQEVPSWLENMAFEHHYKGGSRGRSKSR 589

Query: 402 KSTGFDRR 409
            S GF  R
Sbjct: 590 FSGGFGAR 597


>gi|14861844|ref|NP_149068.1| putative ATP-dependent RNA helicase Pl10 [Mus musculus]
 gi|130256|sp|P16381|DDX3L_MOUSE RecName: Full=Putative ATP-dependent RNA helicase Pl10
 gi|200389|gb|AAA39942.1| PL10 protein [Mus musculus]
 gi|26325502|dbj|BAC26505.1| unnamed protein product [Mus musculus]
 gi|148681106|gb|EDL13053.1| DNA segment, Chr 1, Pasteur Institute 1 [Mus musculus]
 gi|223460348|gb|AAI39288.1| DNA segment, Chr 1, Pasteur Institute 1 [Mus musculus]
 gi|223461116|gb|AAI39287.1| DNA segment, Chr 1, Pasteur Institute 1 [Mus musculus]
          Length = 660

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 138/428 (32%), Positives = 215/428 (50%), Gaps = 29/428 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 180 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 239

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    K   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 240 QIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 299

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 300 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 359

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 360 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 419

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 420 WVEEADKRSFLLDLLNATGKDSLI--LVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 477

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 478 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 537

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH-NHARKNNPIPQ 401
           G A +   + +I     +       +D L      +   LE +    H     +     +
Sbjct: 538 GLATSFFNERNINITKDL-------LDLLVEAKQEVPSWLENMAFEHHYKGGSRGRSKSR 590

Query: 402 KSTGFDRR 409
            S GF  R
Sbjct: 591 FSGGFGAR 598


>gi|330886294|gb|EGH20195.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. mori str.
           301020]
          Length = 459

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 201/378 (53%), Gaps = 8/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++ +    L +  G+ F  Q   LE 
Sbjct: 66  I---NPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIKQTPQRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F     R                    Y    ++       +  
Sbjct: 183 LFSATYPVGIKQLSSKF----MRDPQTVKVEALHADSQIEQIFYEISPEQRLEAVVKVLG 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 239 HFRPASCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 299 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 358

Query: 362 KLIEKKVDWLNGDLSSLN 379
           +L +  ++W   D  S+ 
Sbjct: 359 ELQKAPLNWQQYDQLSIK 376


>gi|302831193|ref|XP_002947162.1| hypothetical protein VOLCADRAFT_103394 [Volvox carteri f.
           nagariensis]
 gi|300267569|gb|EFJ51752.1| hypothetical protein VOLCADRAFT_103394 [Volvox carteri f.
           nagariensis]
          Length = 481

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 136/396 (34%), Positives = 206/396 (52%), Gaps = 10/396 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL   ++ A     +V P+PIQ +  P++L   D+ GIA TG+GKT  F LPML  
Sbjct: 67  FEHTGLPSDMLHA--TRNFVSPSPIQAQCWPIILAGRDLIGIAATGSGKTLGFGLPMLRH 124

Query: 63  ----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                + G    + P  +++ PTRELA Q+    E+ G   ++    + GG+P   Q   
Sbjct: 125 IAAQRDNGVVSGKGPFAIVMAPTRELALQINQVLEEAGSQCSVRTVCVYGGVPKGPQVAA 184

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G +V++ TPGR+ D  N G L +  +   V+DEADRMLD+GF P+I+ I  L    R
Sbjct: 185 LKSGVEVVVGTPGRMEDLLNDGVLQLKKVTYAVLDEADRMLDLGFEPHIRAIMGLTRADR 244

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALL 235
           QTL+FSAT    +QK++  FL +P ++ + +    A       V      ++      LL
Sbjct: 245 QTLMFSATWPAAVQKLAIAFLSHPVKVTIGSQDLAASHSITQRVDVIDPNARDGRLLELL 304

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           QQ   ++      IIF   KK    +   L ++G+   AIHG+I Q+ R   +  FK G 
Sbjct: 305 QQYHGAKGRKNRVIIFVLYKKEAPRVEQLLSRKGWKAVAIHGDISQQQRTDAVDKFKSGV 364

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DI 354
           + L++A+D+AARGLDIPDV  V N+  P   E+Y+HRIGRTGRAG+ G A T      D 
Sbjct: 365 VPLLIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKTGIAHTFFCAGPDK 424

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
                +  ++ +    +  +L      ++K +   +
Sbjct: 425 PRAGELINVLREAGQEVPAELLKFGTAVKKKESKMY 460


>gi|229368775|gb|ACQ63054.1| DEAD box polypeptide 18 (predicted) [Dasypus novemcinctus]
          Length = 670

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 119/392 (30%), Positives = 200/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            F  L   ++   + A+ + G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 178 SFTSLANLVNENTLKAIKEMGFTHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPA 237

Query: 60  LTILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K +   R    + IL PTRELA Q     ++    +  T  L++GG    A+ +K
Sbjct: 238 VELIYKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTYHVHTYGLIMGGSNRSAEAQK 297

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 298 LGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPVR 357

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+            T  T++          S+K  LL  
Sbjct: 358 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKTNATVDGLEQGYVVCPSEKRFLLLF 417

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 418 TFLKKNRKKKMMVFFSSCMSVKYHYELLNYIDLPVLAIHGRQKQNKRTSTFFQFCNADSG 477

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
           +++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 478 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELG 536

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + ++    +S +   LEK+
Sbjct: 537 FLRYLKQSKVPLSEFEFSWSKISDIQSQLEKL 568


>gi|123468442|ref|XP_001317439.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121900173|gb|EAY05216.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 416

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 119/397 (29%), Positives = 203/397 (51%), Gaps = 9/397 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLGL   +V A    G+  P PIQIKTIP  +++ D+CG A+TG+GKT +++LP+  
Sbjct: 7   TFSDLGLCQPMVDACKSLGWKYPMPIQIKTIPPAIEKKDICGTAETGSGKTGAYMLPIFH 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + +          L+  PTRELA Q+       GK+  + V  +IGG+  ++Q K L+ 
Sbjct: 67  HMWENPHSFFA---LVFAPTRELATQIDHVTRDIGKDIKVRVCTIIGGVDEDSQVKALKA 123

Query: 122 GADVLICTPGRILDHFNRGKLL---MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              V++ TPGR+         +        ++  +  + + +  F   IQ I S +  T 
Sbjct: 124 QPHVVVATPGRLARLIRNNPKVIPLNKVECLVFDEADNMLREPSFQTDIQLILSKLNSTH 183

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT LFSATM +E++++++  + +P R+ + + ++ A T+    V +     +   +    
Sbjct: 184 QTYLFSATMPEEIEQLAKQTMSDPVRLSLTSVNTVARTLTEHLVISETGKKEATLVAL-- 241

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +Q   K  IIF    K    +   L    F     HG + QR R+  +  FK G  ++
Sbjct: 242 -MNQYPDKQTIIFVGSCKTATIISTLLSNLNFRTIVYHGQLPQRERINAIDRFKNGDYRV 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+++ +RGLD+P V  V N+++P   E YIHR+GR GRA R G A T++   ++    
Sbjct: 301 LVATNVGSRGLDVPHVDLVINYELPEEHEEYIHRVGRAGRAERSGVAVTIITANEVVGYI 360

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
            +E  ++KK+   +  L  +    EK+++A+     K
Sbjct: 361 RLENFLKKKIPKKDIPLEKIEEVTEKVELAKRVAVEK 397


>gi|330961130|gb|EGH61390.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 459

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 201/378 (53%), Gaps = 8/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++ +    L +  G+ F  Q   LE 
Sbjct: 66  I---NPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQTPQRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F     R                    Y    ++       +  
Sbjct: 183 LFSATYPVGIKQLSSKF----MRDPQTVKVEALHADSQIEQIFYEISPEQRLEAVVKVLG 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 239 HFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 299 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 358

Query: 362 KLIEKKVDWLNGDLSSLN 379
           +L +  ++W   D  S+ 
Sbjct: 359 ELQKAPLNWQQYDNLSIK 376


>gi|89075877|ref|ZP_01162256.1| putative ATP-dependent RNA helicase DbpA [Photobacterium sp. SKA34]
 gi|89048406|gb|EAR53983.1| putative ATP-dependent RNA helicase DbpA [Photobacterium sp. SKA34]
          Length = 461

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 131/367 (35%), Positives = 210/367 (57%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L+P ++  +   GY   TPIQ +++PL+L+  DV    +TG+GKTA+F L +L  
Sbjct: 6   FSTLNLNPDLLSNLTSLGYDAMTPIQAQSLPLILEGKDVIAQGKTGSGKTAAFGLGLLQN 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+  R RV+   TL+L PTRELA QVA    +  +  +    L +  G PF  Q   LE 
Sbjct: 66  LKVKRFRVQ---TLVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGTPFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ +H  +G L ++ +  LV+DEADRML+MGF   +  I  + P  RQTL
Sbjct: 123 GAHIIVGTPGRVEEHVRKGFLCLDELNTLVLDEADRMLEMGFQDSLDAIIDVAPSDRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   ++  +++  ++NP  ++V +     +           + +       +LL S
Sbjct: 183 LFSATYPTQIASIAKRIMRNPVEVKVES---NHDNSSISQHFYKVESNDDRLRAVRLLLS 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q   ++ +IFCN K+    +   LE  GFS  A+HG+++QR R + L  F   +  ++VA
Sbjct: 240 QHRPESCVIFCNTKREAQEISDDLEDYGFSSIALHGDLEQRERDRTLVLFANKSRSILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++  V N+ +    E ++HRIGRTGRAG  G A +L + ++   +  +E
Sbjct: 300 TDVAARGLDIDNLDAVINYHLARDTEVHVHRIGRTGRAGSKGIACSLFSDKEHYKVALLE 359

Query: 362 KLIEKKV 368
             +++ +
Sbjct: 360 DYLDRPI 366


>gi|322388235|ref|ZP_08061839.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           infantis ATCC 700779]
 gi|321140907|gb|EFX36408.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           infantis ATCC 700779]
          Length = 447

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 125/450 (27%), Positives = 204/450 (45%), Gaps = 26/450 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTQFKFKKYIEEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ + ++      +   +  +
Sbjct: 61  QQLDEESDSVQAV---ITAPSRELATQIYQAARQIASHSDVEIRVVNYVGGTDKARQIDK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +          
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYEL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 237 --TQVMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWLNGD-----------LSSLNPPLEKIDIAQHNHARKNNPIPQKST-- 404
             +EKL  K V  +  D            ++     EK+DI      +K     +     
Sbjct: 355 RELEKLGIKFVPKVVKDGEFQDTYDRDRRANREKKQEKLDIEMIGLVKKKKKKVKPGYKK 414

Query: 405 ----GFDRRKKNYSSQKSHIPLKESEKISK 430
                 D +++     +S    +   K  +
Sbjct: 415 KIQWAVDEKRRKTKRAESRARGRAERKAKR 444


>gi|255942321|ref|XP_002561929.1| Pc18g00830 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586662|emb|CAP94307.1| Pc18g00830 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 520

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 117/431 (27%), Positives = 207/431 (48%), Gaps = 19/431 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L ++P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F +P++ 
Sbjct: 91  TFAELDVAPWLVSSLATMAIKRPTAIQKACIPEILKGKDCIGGSRTGSGKTMAFAVPIMQ 150

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +    +     L+L PTRELA Q+ + F       N+   L++GG+    Q  +L  
Sbjct: 151 QWARNPFGIYA---LVLTPTRELALQIYEQFRAVSAPQNMKPILVVGGMDMRQQAIELAS 207

Query: 122 GADVLICTPGRILDHFNRGKLLM----NNIEILVIDEADRMLDMG---FIPYIQNITSLV 174
              V+I TPGR+ DH              ++++V+DEADR+L  G    +P ++     +
Sbjct: 208 RPHVVIATPGRLADHIKTSGEDTVAGLRRVKMVVLDEADRLLASGPGSMLPDVETCLGAL 267

Query: 175 PFTRQTLL--FSATMTDEL-----QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           P + +     F+ATMT E+        + N                              
Sbjct: 268 PPSAERQTLLFTATMTAEVRALKSMPAAGNKPPIFMTEIGTENQGKIPPTLKQTYLKVPM 327

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             ++  L   L    +  K  I+FCN  K    L  +L + G  + ++H  + Q  R   
Sbjct: 328 THREAFLHALLSTEVNVTKPVIVFCNHTKTCDLLERTLRRLGHRITSLHSILPQSERTAN 387

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L+ F+    +++VA+D+A+RGLDIP V  V N++VP   ++Y+HR+GRT RAGR G+A T
Sbjct: 388 LARFRATAARVLVATDVASRGLDIPSVELVINYEVPRNPDDYVHRVGRTARAGRSGEATT 447

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           L+ + D++ + AIE+ + ++++    +  ++   + +  + +   + K     +   G D
Sbjct: 448 LIGQRDVELVLAIEERVGRQMEEFAQEGVNIESRVVRTGLLKEVGSAKREAAGEIDEGRD 507

Query: 408 --RRKKNYSSQ 416
              RK+N   +
Sbjct: 508 ILGRKRNKLKK 518


>gi|332239444|ref|XP_003268913.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Nomascus
           leucogenys]
          Length = 547

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 121/493 (24%), Positives = 206/493 (41%), Gaps = 41/493 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F  +GL P+++ AV D G+ +PT IQ K IPL L+  D+   A+TG+GKTA++ +PM   
Sbjct: 9   FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQ 115
            L     G    +  R L+L PT+ELA Q     ++        V +            +
Sbjct: 69  LLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSASQR 128

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              +E+   V+      +         L +++E+LV+DEAD +   GF   ++++   +P
Sbjct: 129 AVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q  L SAT  +++Q + E  L NP  +++             F         K  LL
Sbjct: 189 RIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL+        ++F N       L   LE+     C ++G +  RSR  I+S F +G 
Sbjct: 249 YALLKLSLIRGKSLLFVNTLDRSYRLRLFLEQFSIPSCVLNGELPLRSRCHIISQFNQGF 308

Query: 296 IQL---------------------------MVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
                                                ARG+D   V  V NFD+P   E 
Sbjct: 309 YDCVIATDAEVLGAPIKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEA 368

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHR GRT RA   G   T V   +  H+  IE+L+    +  +  L      +E+I+  
Sbjct: 369 YIHRAGRTARANNPGIVLTFVLPTEQSHLGKIEELL--SGENRSPILLPYQFRMEEIEGF 426

Query: 389 QHNHARKNNPIPQKSTGFDR----RKKNYSSQKSHIPLKESEK-ISKLQQDIQENDADSL 443
           ++        + +++    R    +++   S+K     +++ + +  L+ D+  + A   
Sbjct: 427 RYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVK 486

Query: 444 GFRGNMPAFMLPK 456
              G++P +++P 
Sbjct: 487 PHLGHVPDYLVPP 499


>gi|326334210|ref|ZP_08200433.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
 gi|325948001|gb|EGD40118.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
          Length = 482

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 133/439 (30%), Positives = 227/439 (51%), Gaps = 7/439 (1%)

Query: 9   SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
            P++   +   G   P  IQ  T+ + LQ  D+ G A+TG+GKT +F +P++      + 
Sbjct: 2   HPEICAPLERKGITTPFAIQEMTLSVALQGTDLIGQARTGSGKTLAFGIPVVQRSVSPKD 61

Query: 69  RVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           R  +      P+ LI+ PTRELA QV+       ++  L V  + GG  +E Q + LE+G
Sbjct: 62  RDYIDLPQGKPQALIVAPTRELAMQVSAEISMISEDRGLRVLTVYGGAGYEPQIEALEKG 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR++D  NR  L ++++  LV+DEAD MLD+GF+P ++ + +L P TRQTLL
Sbjct: 122 VDIVVGTPGRLIDLANRKVLDLSHVHALVLDEADEMLDLGFLPDVEKLVTLTPETRQTLL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +  ++ +++++P        ++  ET+       Y  +      +   L   
Sbjct: 182 FSATMPGAIVALARSYMRHPM-NIRAESAAERETVPATAQFVYQAHDLDKPEMIGRLLQC 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +     ++F   K+    +   L ++GF    +HG++ Q +R +++  F++G ++++VA+
Sbjct: 241 EDHDKVVVFARTKRQAQRVADDLAERGFPASPLHGDMQQAARERVMQKFRDGKVEVLVAT 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+D+  V HV N+  P+  + Y+HRIGRTGRAG  G A TLV   D+     I K
Sbjct: 301 DVAARGIDVTGVSHVVNYTTPDDEKTYVHRIGRTGRAGASGVAVTLVDWADLHKWKMINK 360

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPL 422
            ++   D      SS    L  + I +    R     P+K    D        +++    
Sbjct: 361 ALDLPFDDPQETYSSSEHFLHDMGIPKGTKGRIKKATPEKPKDKDAGTDGEKRERAPRNR 420

Query: 423 KESEKISKLQQDIQENDAD 441
                 S+  Q ++++ A 
Sbjct: 421 NRQRTRSRGGQVVEQSAAP 439


>gi|121595996|ref|YP_987892.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
           JS42]
 gi|120608076|gb|ABM43816.1| ATP-dependent RNA helicase DbpA [Acidovorax sp. JS42]
          Length = 469

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 138/392 (35%), Positives = 208/392 (53%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LSP+++  +   GY + TPIQ  ++P  LQ  D+   A TG+GKTA+F L M+  
Sbjct: 16  FSSLPLSPEMLANLQQLGYAQMTPIQAASLPFSLQGRDLIAQASTGSGKTAAFGLAMVDR 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L      V+    L+L PTRELA QVA    +  +  +    + +  G+P   Q   LE 
Sbjct: 76  LNPRWFAVQ---GLVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRGQIASLEN 132

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++D   RGKL + N++ LV+DEADRMLDMGF+  I+ +    P  RQTL
Sbjct: 133 GAHIVVGTPGRVMDLMERGKLDIANLKTLVLDEADRMLDMGFLADIETVVRQCPAERQTL 192

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D +  +++ F     R       +            Y   +++   +   + +
Sbjct: 193 LFSATYPDGIAGLAQRF----MRAPQMVKVAAQHGAGKIAQRWYEVDAREKVDVVARMLA 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   N+  +L+ QGFS  A+ G ++QR R ++L  F   +  ++VA
Sbjct: 249 HFRPASSIAFCNTKQQCRNVVTALQSQGFSALALFGELEQRERDEVLVQFANKSCSVLVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI D+  V N DV    E +IHRIGRTGR    G A  LV+ +++  +  IE
Sbjct: 309 TDVAARGIDIADLSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLVSMDEMGSVGRIE 368

Query: 362 KLIEKKVDWLNGDL------SSLNPPLEKIDI 387
            L  +  ++   D         L PP+  I I
Sbjct: 369 LLQGRACEFFPVDELTPTAGGELRPPMCTIQI 400


>gi|289624121|ref|ZP_06457075.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289647605|ref|ZP_06478948.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|320321939|gb|EFW78035.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320330955|gb|EFW86929.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330865833|gb|EGH00542.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330872189|gb|EGH06338.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 459

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 201/378 (53%), Gaps = 8/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++ +    L +  G+ F  Q   LE 
Sbjct: 66  I---NPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F     R                    Y    ++       +  
Sbjct: 183 LFSATYPVGIKQLSSKF----MRDPQTVKVEALHADSQIEQIFYEISPEQRLEAVVKVLG 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 239 HFRPASCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 299 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 358

Query: 362 KLIEKKVDWLNGDLSSLN 379
           +L +  ++W   D  S+ 
Sbjct: 359 ELQKAPLNWQQYDQLSIK 376


>gi|146293591|ref|YP_001184015.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145565281|gb|ABP76216.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 427

 Score =  138 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 147/425 (34%), Positives = 221/425 (52%), Gaps = 24/425 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LG+   ++  + +  YV PTP+Q  TIP VL   DV   A TG+GKTA+F +P+L 
Sbjct: 10  SFAQLGIIAPLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQ 69

Query: 62  ILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQN 116
            L   +   +     R L+L PTRELA QVAD+F  Y  + N    +    GG+   AQ 
Sbjct: 70  QLVDAKTEDKTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQM 129

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  GADVL+ TPGR+LD  +   + +N +  LV+DEADRML +GF   +  +   +P 
Sbjct: 130 QSLRSGADVLVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPV 189

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +QTLLFSAT  +E+++++   L NP   ++ +     E                   L 
Sbjct: 190 KKQTLLFSATFPEEVRELTAKLLNNPLEYQLQS-----EQESTIHQRVITVNRPMKTALL 244

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L  +      +IF + K    +L   L K+G +    HG+  Q +R ++L  FK G I
Sbjct: 245 AHLIKEHQWSQALIFVSAKNTCNHLAQKLSKRGITAEVFHGDKAQGARTRVLDGFKNGEI 304

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARG+DI  +  V NFD+P    +Y+HRIGR+GRAG  G A TL++ ED  H
Sbjct: 305 SVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHH 364

Query: 357 IDAIE-----KLIEKKV------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
              IE     KL+ +++      D +  +L     P+ K +       +K   +PQ +  
Sbjct: 365 FGVIEKKNKLKLVREQIVGFEADDDMPAELLEQAKPVAKPE---GTGKKKRKQLPQANVE 421

Query: 406 FDRRK 410
           F  +K
Sbjct: 422 FWGKK 426


>gi|303391238|ref|XP_003073849.1| DEAD box ATP-dependent RNA helicase [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303302997|gb|ADM12489.1| DEAD box ATP-dependent RNA helicase [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 450

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 101/365 (27%), Positives = 169/365 (46%), Gaps = 8/365 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL +  ++   + ++G+V    IQ K IP+ L+ HD+ G +QTGTGKT +F++P+L
Sbjct: 1   MKFEDLKIDQRIEKGLRESGFVDMKEIQQKVIPMALEGHDIIGSSQTGTGKTLAFLVPIL 60

Query: 61  TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L   +         +I+ PTRELA Q+ D   K GK   L+  L++GG+  E ++ +L
Sbjct: 61  QKLTDLQWSGGDGLGCVIITPTRELALQIFDVLSKVGKYTVLSTGLIMGGLETENESLRL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++      +        L    I+ILV+DEAD+M++MGF   +++I   +P  +Q
Sbjct: 121 SNMNILVCTPGRFLQHLQENPYLNTGGIQILVLDEADKMIEMGFKETLEDILGYIPSKKQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT      ++          +       +        +    + +          
Sbjct: 181 TLLFSATPKASTARILRLEDPKIVSMYKEEGFPSQLHQYFYMMRMEDKVN-----YLHTF 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              +    GI+F +  K V       E  K    +  + G + Q+ R+     F      
Sbjct: 236 IGSNPGVKGIVFFSTCKEVKFHYLLFEKLKLRNRIFCLSGGMSQKQRIDTFKKFVREKNG 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++  +DL +RGLD P V  V  +D P   E Y+HR+GRT R    G+++  +   + K +
Sbjct: 296 ILFCTDLGSRGLDFPKVDVVIQYDCPCNIETYVHRVGRTARNNEGGESYVYLVYGEEKLL 355

Query: 358 DAIEK 362
             I+K
Sbjct: 356 GDIQK 360


>gi|42522929|ref|NP_968309.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39574125|emb|CAE79302.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 656

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 134/368 (36%), Positives = 211/368 (57%), Gaps = 15/368 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           +F   GLS  V+ A+ D G+  PTPIQ + +P++L   +D  G+A TGTGKTA+F +P++
Sbjct: 45  NFESFGLSAPVMAAMADMGFTTPTPIQRQALPILLAGANDFIGLASTGTGKTAAFGIPLI 104

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     V+  + L+L PTRELA QVA+     GK   + V  + GG  +  Q   ++
Sbjct: 105 ENIDST---VKDTQALVLSPTRELALQVAEQLTLLGKKKGVRVVTIYGGASYRTQIDGIK 161

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--- 177
           RGA +++ TPGR++D   +  + + +++ +V+DEAD ML MGF   ++ I S        
Sbjct: 162 RGAHIVVATPGRLVDFLEQKMIKLQSVKTVVLDEADEMLSMGFKEALETILSATQPDDSD 221

Query: 178 -----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                 +T LFSATM+ E+++++  +L+NP+ + VN    TA+TIE  +      Y  + 
Sbjct: 222 SVRAACRTWLFSATMSSEVRRLTSTYLENPETVSVNKVGGTADTIEQVYYTVKNSYKTEV 281

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                    +     GIIFC  K  V  L   L ++GF   ++HG+  Q+ R   L  FK
Sbjct: 282 IGRLLQTLPEFY---GIIFCQTKMEVAELADVLTQRGFPADSLHGDKSQQEREATLKKFK 338

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +  ++++VA+D+AARGLDI D+ HV N  +P  +E+Y+HRIGRTGR G+ G A TLV  E
Sbjct: 339 QRQVKVIVATDVAARGLDIKDLTHVVNHSLPWDSESYVHRIGRTGRNGQKGTAITLVNPE 398

Query: 353 DIKHIDAI 360
            +  +  +
Sbjct: 399 QLTLLRRV 406


>gi|123390063|ref|XP_001299820.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|123391502|ref|XP_001300083.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121880749|gb|EAX86890.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121881062|gb|EAX87153.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 865

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 114/372 (30%), Positives = 182/372 (48%), Gaps = 6/372 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P++   V +  + +PTPIQ   IP+V+   ++ GIAQTG+GKTA++++P +T +   + +
Sbjct: 495 PELFQNVREQNWTEPTPIQKIAIPIVMSGMNLVGIAQTGSGKTAAYLIPAITYV-INQNK 553

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
            R P  LI+  TREL  Q+ +  E   KN ++ VA+  GG     Q  +   GAD++   
Sbjct: 554 KRGPHVLIMANTRELVKQIQEFGEILTKNTSVKVAVAYGGENNRRQQIRDIAGADIIAAA 613

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGR+LD      +   +I I+VIDEAD+M+   F P  + + S  P   QTL+FSAT  D
Sbjct: 614 PGRLLDFIRNNNIKPESIGIVVIDEADKMVSNDFEPQCKAVISRCPKNIQTLMFSATWPD 673

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK----CALLQQLLQSQDTM 245
           E+Q +++N+L    R+ VN+   T        V    + S +         +  +  ++ 
Sbjct: 674 EVQFMAQNYLGEYIRVIVNSRELTININIKQMVIEKDRDSLRQLGEIVEGIKRSKGNESY 733

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              IIFC  K+ V      L      V              + +         MV + + 
Sbjct: 734 PKIIIFCKTKRTVEEAHDYLAPHIKVVYTHGDVNQIDREKALNAFKHANYPIAMVCTAVL 793

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDAIEKLI 364
           +RG+D+ D+ HV N D+P+    Y HRIGRTGR  R G A +L   ++D +    + K +
Sbjct: 794 SRGIDVNDITHVVNLDMPDSITEYAHRIGRTGRMDRTGVAISLFDRRKDDRLRYELRKYM 853

Query: 365 EKKVDWLNGDLS 376
           E+    +   L 
Sbjct: 854 EQAGQDIPDILQ 865


>gi|143455388|sp|Q0D622|RH32_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 32
 gi|34395216|dbj|BAC83715.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|50508742|dbj|BAD31318.1| putative RNA helicase [Oryza sativa Japonica Group]
          Length = 773

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 109/370 (29%), Positives = 179/370 (48%), Gaps = 4/370 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS K    +  AGY + + IQ   +P  L   DV G A+TG+GKT +FV+P+L  
Sbjct: 82  FDELPLSNKTKDGLRKAGYTEMSEIQRAALPHALCGRDVLGAAKTGSGKTLAFVIPVLEK 141

Query: 63  LEKGRARVRMPRTLIL-EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + R         I+  P ++LA Q+ + F+K GK +  + A ++G      + K +  
Sbjct: 142 LYRERWGPEDGVGCIVLSPNKDLAGQIFNVFQKVGKLHGFSAACIVGNRKGLDEEKAVIN 201

Query: 122 GADVLICTPGRILDHF--NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             ++L+CTPGR+L H             +ILVIDEAD++LD  F   + N+ S +P  RQ
Sbjct: 202 NMNILVCTPGRLLQHMGETTNFDCSQIQQILVIDEADQVLDKNFQEQVDNVVSQLPKVRQ 261

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT T  ++ ++   L++P+ I V+  ++TA        A      +K  +L   +
Sbjct: 262 TLLFSATQTKSVKDLARVSLKDPEYISVHEEATTATPDTLEQYAMIVPLEQKLNMLWSFI 321

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +     +  +   + K+         + +            +    + +    +    ++
Sbjct: 322 KRHLKSRILVFLSSVKQVKFVYEVFKKLRPGISLRCMHGRMKYEVQQAIVAEFKEGHSVL 381

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            ++D+ ARGLDI DV  V   D P     YIHR+GRT R  + GKA   +  E+ K ++ 
Sbjct: 382 FSTDIFARGLDIEDVDWVVQVDCPENIALYIHRVGRTARYNKRGKALIFLCPEEEKMLEK 441

Query: 360 IEKLIEKKVD 369
           + K  E K+ 
Sbjct: 442 L-KAAESKIP 450


>gi|330900813|gb|EGH32232.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 459

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 201/378 (53%), Gaps = 8/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++ +    L +  G+ F  Q   LE 
Sbjct: 66  I---NPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPKRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F     R                    Y    ++       +  
Sbjct: 183 LFSATYPAGIKQLSSKF----MRDPQTVKVEALHADSQIEQIFYEISPEQRLEAVVKVLG 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 239 HFRPASCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 299 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 358

Query: 362 KLIEKKVDWLNGDLSSLN 379
           +L +  ++W   D  S+ 
Sbjct: 359 ELQKAPLNWQQYDRLSIK 376


>gi|327291685|ref|XP_003230551.1| PREDICTED: probable ATP-dependent RNA helicase DDX52-like [Anolis
           carolinensis]
          Length = 487

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 111/424 (26%), Positives = 196/424 (46%), Gaps = 27/424 (6%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     +SP+++  V  AG+  PTP+Q++ IP +L R ++   A TG+GKT +F L
Sbjct: 68  TFEQLREEYKISPRIMRNVEAAGFQAPTPVQMQAIPAMLHRRELLACAPTGSGKTLAFSL 127

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+LT L++   +    R LIL PTRELA+Q      K  +        +       +   
Sbjct: 128 PILTHLKQPMNKGF--RALILAPTRELASQTHRELLKLSEGTGFRIHMIHKAAEAAKKFG 185

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  DVL+ TP R++    +    ++   +E LV+DE+D++ + G   +        
Sbjct: 186 PKSSQKFDVLVTTPNRLIYLLKQDPPAIDLSRVEWLVVDESDKLFEEGKTGFRDQLATLF 245

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
           ++      +  LFSAT   ++++     L +   + +   ++ AET++   +   ++  K
Sbjct: 246 SACSSPLAKRALFSATFAHDVEQWCRLNLDSVVSVSIGARNAAAETVDQELLFVGSETGK 305

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+  +    +      ++F    +    L   L  +G +   IH +  Q+ R  ++  
Sbjct: 306 LLAM--RDFVKKGFAPPVLVFVQSIERAKELFRELIYEGINADVIHADRTQQQRDSVVHG 363

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D P+ A  YIHRIGRTGRAG  GKA T   
Sbjct: 364 FRAGKIWVLICTALLARGMDFKGVNVVINYDFPSSAVEYIHRIGRTGRAGHAGKAITFFT 423

Query: 351 KEDIKHIDAIEKLIEKK-------VDWLNGDLSS-----LNPPLEKIDIAQHNHARKNNP 398
           ++D   + +I  +I++        +       S      +  PLE+  I     A +   
Sbjct: 424 EDDKPLLRSIASVIQRAGCPVPDYIQHFRKLQSKQKKRLIKKPLEREHILTSPEALRRKA 483

Query: 399 IPQK 402
             ++
Sbjct: 484 KRKQ 487


>gi|50291147|ref|XP_448006.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661189|sp|Q6FP38|DBP1_CANGA RecName: Full=ATP-dependent RNA helicase DBP1
 gi|49527317|emb|CAG60957.1| unnamed protein product [Candida glabrata]
          Length = 604

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 134/459 (29%), Positives = 214/459 (46%), Gaps = 29/459 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
           +F    L   ++  V  A + KPTP+Q  +IP+V +  D+   AQTG+GKT  F+ P   
Sbjct: 139 EFKSPPLDELLLENVELANFSKPTPVQKYSIPIVTKNRDLMACAQTGSGKTGGFLFPVLS 198

Query: 59  ---------MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                    +         R   P  L+L PTRELA Q+ D  +KY     +   ++ GG
Sbjct: 199 ELFLNGPAPLPEHTRHSYMRKCYPSALVLAPTRELAIQIFDEAKKYTYRSWVKPYVVYGG 258

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
            P   Q + ++RG ++L+ TPGR+ D   RGK+ + N++ LV+DEADRMLDMGF P I++
Sbjct: 259 APIGQQMRDMDRGCNLLVATPGRLNDLLERGKISLVNVKYLVLDEADRMLDMGFEPQIRH 318

Query: 170 ITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I               +FSAT   E+Q ++ +FL++   + V    ST+E I+   +   
Sbjct: 319 IVEDCDMPSVNDRQTLMFSATFPREIQHLARDFLKDYIFLSVGRVGSTSENIQQKVLFVE 378

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
                        +   +     ++F   K+    L   L  Q F   AIHG+  Q  R 
Sbjct: 379 DYDKNSA---LLDILINEIDGLTLVFVETKRMADQLTDFLIVQNFKATAIHGDRTQAERE 435

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L  F+ G   ++VA+ +AARGLDIP+V +V N+D+P   ++Y+HRIGRTGRAG  G A
Sbjct: 436 RALHAFRNGIANILVATAVAARGLDIPNVTNVINYDLPTDIDDYVHRIGRTGRAGNVGVA 495

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            +      +     +  L+ +    +   L ++            +  R         TG
Sbjct: 496 TSFFNSNSMNIAKELMDLLTEANQEVPQFLVNMV----------QDSMRFGRGGRNSRTG 545

Query: 406 FDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLG 444
            +R + + +    H    +   +   ++  + ND    G
Sbjct: 546 SNRGRGSNTRDYRHSNKDDWGSLGSSRRGFRSNDNRGFG 584


>gi|301775045|ref|XP_002922942.1| PREDICTED: ATP-dependent RNA helicase DDX18-like [Ailuropoda
           melanoleuca]
 gi|281344914|gb|EFB20498.1| hypothetical protein PANDA_011982 [Ailuropoda melanoleuca]
          Length = 669

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 120/392 (30%), Positives = 202/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L   ++   + A+ + G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 177 SFASLSNLVNEHTLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPA 236

Query: 60  LTILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K +   R    + IL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 237 VELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK 296

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 297 LGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTR 356

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T++          S+K  LL  
Sbjct: 357 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLF 416

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +  K+V      L      V AIHG   Q  R      F      
Sbjct: 417 TFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSG 476

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
           +++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 477 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELG 535

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + ++    +S +   LEK+
Sbjct: 536 FLRYLKQSKVPLSEFEFSWSKISDIQSQLEKL 567


>gi|255013213|ref|ZP_05285339.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_7]
          Length = 587

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 139/401 (34%), Positives = 221/401 (55%), Gaps = 17/401 (4%)

Query: 19  AGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLI 77
            GY  P P+Q + IP +L + +DV  +AQTGTGKTA++ LP+L  +   + +   P+ LI
Sbjct: 1   MGYESPMPVQEEVIPFLLGEDNDVIALAQTGTGKTAAYGLPILQKINVSQYQ---PQALI 57

Query: 78  LEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLERGADVLICTPGRILDH 136
           L PTREL  Q+AD+   Y K  +    L + G    E+Q K L+RG  V++ TPGR++D 
Sbjct: 58  LCPTRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIESQIKTLKRGVHVVVATPGRLIDL 117

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
            NR  + ++N++ +++DEAD ML+MGF   I  I + +P  R  LLFSATM  E+  +++
Sbjct: 118 MNRKTVDLSNVKNVILDEADEMLNMGFTDSINEILAAIPENRNMLLFSATMPKEIASITK 177

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
            ++++PK I +   +   E  ++     Y   ++   L  + L        GIIFC  +K
Sbjct: 178 KYMKDPKEIVIGRKN---EGNKNIRDIYYMVRAQDKYLALKRLADYYPNIYGIIFCRTRK 234

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
               +   L + G++  ++HG + Q  R  ++  F+   IQL+VA+D+AARGLD+ D+ H
Sbjct: 235 ETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRIKNIQLLVATDVAARGLDVDDLTH 294

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW------ 370
           V N+ +P+  E+Y HR GRTGRAG+ G A ++    +   I  IE++I KK D       
Sbjct: 295 VINYGLPDEVESYTHRRGRTGRAGKTGIAISICHVREKGKIREIERIINKKFDKGKMPTG 354

Query: 371 ---LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
                  L +L   +EK+ + +   A     I +K    D+
Sbjct: 355 EQICEKQLFNLVDQIEKVKVNEEEIASLMPSIYRKLEWLDK 395


>gi|42572227|ref|NP_974208.1| DEAD/DEAH box helicase family protein [Arabidopsis thaliana]
 gi|79295464|ref|NP_001030621.1| DEAD/DEAH box helicase family protein [Arabidopsis thaliana]
 gi|108861894|sp|Q3EBD3|RH41_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 41
 gi|332640235|gb|AEE73756.1| DEAD-box ATP-dependent RNA helicase 41 [Arabidopsis thaliana]
 gi|332640237|gb|AEE73758.1| DEAD-box ATP-dependent RNA helicase 41 [Arabidopsis thaliana]
          Length = 505

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 110/400 (27%), Positives = 188/400 (47%), Gaps = 12/400 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F   GL PK++  +  AGY  PTPIQ++ IP  L    +   A TG+GKTASF++P++
Sbjct: 110 LTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPII 169

Query: 61  -----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                   E    + R P  ++L PTREL  QV D  +  GK      AL++GG P   Q
Sbjct: 170 SRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQ 229

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             ++++G +++I TPGR++D  ++  + ++NI   V+DE D ML  GF   +        
Sbjct: 230 LYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQV-MQIFQAL 288

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q LLFSAT++ E++KV  +  +    + +  P+   + +    +   A+  K+    
Sbjct: 289 SQPQVLLFSATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFD 348

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
               Q+       +   ++    +         G    +IHG    + R  ++ +F  G 
Sbjct: 349 ILRSQNHFKPPAVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGE 408

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++V++ +  RG+D+  V  V  FD+P+  + YIH IGR  R G  G A   V ++D  
Sbjct: 409 VPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRN 468

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
               +   ++     +  +L +L           HN  R+
Sbjct: 469 LFPDLVAALKSSGAAIPKELINLTS------REMHNKKRR 502


>gi|329939625|ref|ZP_08288926.1| putative ATP-dependent RNA helicase [Streptomyces griseoaurantiacus
           M045]
 gi|329301195|gb|EGG45090.1| putative ATP-dependent RNA helicase [Streptomyces griseoaurantiacus
           M045]
          Length = 848

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 130/374 (34%), Positives = 204/374 (54%), Gaps = 10/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+ P+   A+   G + P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L 
Sbjct: 43  TFRELGILPETAEALEAVGILNPFPIQEMTLPVALSGSDVIGQAKTGTGKTLGFGLPLLE 102

Query: 62  I----------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
                        +       P+ L++ PTREL  QV ++    GK  N+ V  + GG  
Sbjct: 103 RVSVPADVEAGRARPEDVTNTPQALVVVPTRELCVQVTNDLLTAGKVRNVRVTAIYGGRA 162

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q + L++G DV++ TPGR+LD   + KL + ++  LV+DEAD MLD+GF+P ++ I 
Sbjct: 163 YEPQVEALKKGVDVVVGTPGRLLDLAGQKKLNLAHVRCLVLDEADEMLDLGFLPDVEKII 222

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            ++P  RQT+LFSATM   +  ++  ++  P  I   +P     T+ +     Y  +S  
Sbjct: 223 GMLPARRQTMLFSATMPGAVISLARRYMSQPTHIRATSPEGEGVTLANIKQFVYRAHSMD 282

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              +   +   +     +IFC  K+   ++   L+++GF+  A+HG++ Q +R + L  F
Sbjct: 283 KPEMIARILQAEGRGLAMIFCRTKRTAADIAEQLQQRGFASGAVHGDLGQGAREQALRAF 342

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + Y+HR GRTGRAG  G A T V  
Sbjct: 343 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRTGRTGRAGASGTAITFVDW 402

Query: 352 EDIKHIDAIEKLIE 365
           +DI     I K + 
Sbjct: 403 DDIPRWQLINKALG 416


>gi|150863803|ref|XP_001382401.2| RNA-dependent helicase [Scheffersomyces stipitis CBS 6054]
 gi|158514819|sp|A3LNR6|HAS1_PICST RecName: Full=ATP-dependent RNA helicase HAS1
 gi|149385059|gb|ABN64372.2| RNA-dependent helicase [Scheffersomyces stipitis CBS 6054]
          Length = 567

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 96/364 (26%), Positives = 161/364 (44%), Gaps = 4/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GLS   + A+ D G+   T +Q KTIP +L   DV G A+TG+GKT +F++P + 
Sbjct: 104 KFEDAGLSEPTMRAISDMGFKTMTKVQAKTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 163

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVAD--NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +L   + + R    +I+       A        E    +      ++ G    +   K  
Sbjct: 164 LLYSLKFKPRNGTGVIVVSPTRELALQIFGVARELMAHHTQTFGIVIGGANRRQEAEKLA 223

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    ++      +    N    +  N++ LVIDEADR+L++GF   ++ I  ++P   +
Sbjct: 224 KGVNLLIATPGRLLDHLQNTQGFVFKNLKALVIDEADRILEIGFEEEMKQIIKILPKEER 283

Query: 180 TLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             + FSAT T +++ ++   L+         P + A T +          S K  LL   
Sbjct: 284 QSMLFSATQTTKVEDLARISLRPGPLYINVVPETAASTADGLEQGYVVCDSDKRFLLLFS 343

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              + + K  I+F +   +V      L      V  +HG   Q+ R      F       
Sbjct: 344 FLKKYSKKKIIVFLSSCNSVKYFGELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGT 403

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHI 357
           +V +D+AARGLDIP V  +  FD P+   +YIHR+GRT R     GK+   +   ++  +
Sbjct: 404 LVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGSNGKGKSLMFLTPSELGFL 463

Query: 358 DAIE 361
             ++
Sbjct: 464 RYLK 467


>gi|145547076|ref|XP_001459220.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124427044|emb|CAK91823.1| unnamed protein product [Paramecium tetraurelia]
          Length = 556

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 119/389 (30%), Positives = 198/389 (50%), Gaps = 6/389 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L      A+    + K T IQ + IP +L+  DV G A+TG+GKT +F++P L 
Sbjct: 75  KFTDFALCEPSKKALEKMNFTKMTHIQARAIPHLLKGRDVLGAAKTGSGKTLAFLVPALE 134

Query: 62  ILEKGRARVRMPRTLIL-EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L K + + +    +I+  PTRELA Q+ D  +     +  T+ LLIGG   + +  +L+
Sbjct: 135 LLYKNQFQQKNGTGIIVLTPTRELAQQIFDVAKDLLFYHQKTLGLLIGGANRKEEAIRLQ 194

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G ++LI TPGR +    N    + +N++ L+IDEAD++L +G+   +  I +L+P  RQ
Sbjct: 195 KGVNILIATPGRLLDHLQNTKGFIYHNLQCLIIDEADQLLKIGYEEEMNEILNLLPSERQ 254

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT T ++  ++   L  P  I V+  +  A            +  KK  LL    
Sbjct: 255 TVLFSATQTKKVDDLARLSLNQPIYIGVDDIAQEATVSGLEQGYVIVEADKKFLLLFT-F 313

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              ++ K  ++F +   +V      L      V  IHG   Q  R      F      ++
Sbjct: 314 LQLNSDKKIMVFMSSCNSVKFHAELLNFVDMPVLDIHGKQKQSKRTNTYYEFCNAKKGVL 373

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHID 358
           V +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R     GKA   +  E+  ++ 
Sbjct: 374 VCTDVAARGLDIPEVHWIIQYDPPDDTKEYIHRVGRTCRGLNSSGKALIFLLPEEKGYLG 433

Query: 359 --AIEKLIEKKVDWLNGDLSSLNPPLEKI 385
              + K++  + ++ +  L+++    EK+
Sbjct: 434 HLKLAKVVMNEFEFPSEKLANIQEQFEKL 462


>gi|118360242|ref|XP_001013358.1| Type III restriction enzyme, res subunit family protein
           [Tetrahymena thermophila]
 gi|89295125|gb|EAR93113.1| Type III restriction enzyme, res subunit family protein
           [Tetrahymena thermophila SB210]
          Length = 1130

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 126/380 (33%), Positives = 208/380 (54%), Gaps = 2/380 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   V  A+   G+  PTPIQ K IPL+L+  DV   ++TG+GKTA+F++P++  
Sbjct: 301 FESMNLVYPVYKAIKTRGFNMPTPIQRKAIPLILEGRDVVACSRTGSGKTAAFIIPLINK 360

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   +R+   R LI+ PTRELA Q+A   + + K  +LT  L++GG   E Q + L   
Sbjct: 361 LQ-NHSRIVGARALIVVPTRELALQIASVLKTFIKFTDLTYTLIVGGHGLEGQFESLASN 419

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR+    +   L +N +E L+ DE D + +MGF   ++ I   V   RQTL+
Sbjct: 420 PDIIIATPGRLSQLIDETDLSLNKVEFLIFDECDYLFEMGFADQMKTILKKVSQQRQTLM 479

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ +EL   +   L+    +++++  +  E I            K  +L+  L    
Sbjct: 480 FSATIPEELSSFARAGLKEYVFVKLDSEFTINENI-TLNFILTRNNEKIASLVYLLKSVI 538

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +N I+F + K +V  +C  L+K   S  +I+G +D  +R   +S F+     +MV +
Sbjct: 539 PSEENSIVFASTKYHVDLICAILDKFNISNVSIYGKMDAFARKDQISEFRNKKCNVMVVT 598

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLA+RG+D+P+V +V ++D P   + +IHR GRT RAGR G  + L+   +I ++  I  
Sbjct: 599 DLASRGIDLPNVNNVIHYDYPASTKIFIHRSGRTARAGRKGNTYALMGMNEIMYVSEIMV 658

Query: 363 LIEKKVDWLNGDLSSLNPPL 382
           L  +K+     D+   +  +
Sbjct: 659 LAGRKLSNQVEDMKDTSKAI 678


>gi|222109707|ref|YP_002551971.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221729151|gb|ACM31971.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
          Length = 469

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 137/392 (34%), Positives = 207/392 (52%), Gaps = 14/392 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LSP+++  +   GY + TPIQ  ++P  LQ  D+   A TG+GKTA+F L M+  
Sbjct: 16  FSSLPLSPEMLANLQQLGYAQMTPIQAASLPFSLQGRDLIAQASTGSGKTAAFGLAMVDR 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L      V+    L+L PTRELA QVA    +  +  +    + +  G+P   Q   LE 
Sbjct: 76  LNPRWFAVQ---GLVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRGQIASLEN 132

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++D   RGKL +  ++ LV+DEADRMLDMGF+  I+ +    P  RQTL
Sbjct: 133 GAHIVVGTPGRVMDLMERGKLDIAKLKTLVLDEADRMLDMGFLADIETVVRQCPAERQTL 192

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D +  +++ F     R       +            Y   +++   +   + +
Sbjct: 193 LFSATYPDGIAGLAQRF----MRAPQMVKVAAQHGAGKIAQRWYEVDAREKVDVVARMLA 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I FCN K+   N+  +L+ QGFS  A+ G ++QR R ++L  F   +  ++VA
Sbjct: 249 HFRPASSIAFCNTKQQCRNVVTALQSQGFSALALFGELEQRERDEVLVQFANKSCSVLVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI D+  V N DV    E +IHRIGRTGR    G A  LV+ +++  +  IE
Sbjct: 309 TDVAARGIDIADLSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLVSMDEMGSVGKIE 368

Query: 362 KLIEKKVDWLNGDL------SSLNPPLEKIDI 387
            L  +  ++   D         L PP+  I I
Sbjct: 369 LLQGRACEFFPVDELTPTAGGELQPPMCTIQI 400


>gi|109114658|ref|XP_001112113.1| PREDICTED: probable ATP-dependent RNA helicase DDX52-like [Macaca
           mulatta]
          Length = 599

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 112/442 (25%), Positives = 209/442 (47%), Gaps = 29/442 (6%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     ++ +++  +LDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 162 TFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 221

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L++   +      LI+ PTRELA+Q+     K  +        +    +  +   
Sbjct: 222 PILMQLKQPANKGFR--ALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFG 279

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++    +    ++  ++E LV+DE++++ + G   +        
Sbjct: 280 PKSSKKFDILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESNKLFEDGKTGFRDQLASIF 339

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT   ++++  +  L N   + +   +S  ET+E   +   ++  K
Sbjct: 340 LACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSETGK 399

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +  +     ++F    +    L H L  +G +V  IH    Q+ R   + +
Sbjct: 400 LLAMRELVKKGFNPP--VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHS 457

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   
Sbjct: 458 FRAGRIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFT 517

Query: 351 KEDIKHIDAIEKLIEKK----VDWLNG--------DLSSLNPPLEKIDIAQHNH--ARKN 396
           ++D   + ++  +I++      +++ G            +  PLE+  I+        K 
Sbjct: 518 EDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPKCFLEKA 577

Query: 397 NPIPQKSTGFDRRKKNYSSQKS 418
               +K TG + +KK     KS
Sbjct: 578 KDKRKKVTGQNSKKKVALEDKS 599


>gi|315037650|ref|YP_004031218.1| RNA helicase [Lactobacillus amylovorus GRL 1112]
 gi|325956135|ref|YP_004286745.1| RNA helicase [Lactobacillus acidophilus 30SC]
 gi|312275783|gb|ADQ58423.1| putative RNA helicase [Lactobacillus amylovorus GRL 1112]
 gi|325332700|gb|ADZ06608.1| RNA helicase [Lactobacillus acidophilus 30SC]
 gi|327182943|gb|AEA31390.1| RNA helicase [Lactobacillus amylovorus GRL 1118]
          Length = 453

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 133/440 (30%), Positives = 206/440 (46%), Gaps = 13/440 (2%)

Query: 1   MD--FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           M+  F D  + P V   +    + KPT +Q K IP +L    V   A TG+GKT ++++P
Sbjct: 1   MNNIFEDSRIKPAVQAGLKKIHFEKPTKVQEKVIPAMLSDLSVVVQAATGSGKTHAYLVP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +   +++    V+   TL      +   QVA    K          L  G        K 
Sbjct: 61  IFNEIDEAAHTVQAIITLPSRELADQLYQVARELRKASGMNFSIAHLAGGTDRERQLEKY 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 ++I TPGR+LD   +    ++ ++  VIDEAD  LDMGF+  I  + + +P   
Sbjct: 121 QNNTPQLVIATPGRLLDFVQKKVFAVDQVKTFVIDEADMTLDMGFLADIDQVAAKLPKDV 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q   FSAT+  +L      ++ +P +I ++ PS  A TI           SK    +   
Sbjct: 181 QIAAFSATIPVKLSNFLRKYMAHPDQIVIDNPSVIAPTI---KNDLIDIGSKNRKSVLYK 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +       ++F N K+ V  L   L+ QG  V  IHG + +R R + L   ++G  Q 
Sbjct: 238 LLTMGQPYLALVFANTKQTVDELTKYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQYQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARGLDI  +  V N+++P   E  IHRIGRTGR G  G A TL+ +E++  I+
Sbjct: 298 VVASDLAARGLDIDGISLVINYEIPRDIEFVIHRIGRTGRNGLSGHAITLIREEEMNRIE 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF-----DRRKKNY 413
            +EK +    D++      L P   K   ++ N   KN  +  K  G+      +RK  Y
Sbjct: 358 ELEK-MGVHFDFVEIKNGELVP--RKHYRSRENRQSKNRKLDTKLVGYVKKEKRKRKPGY 414

Query: 414 SSQKSHIPLKESEKISKLQQ 433
             +      +++ +  KL+Q
Sbjct: 415 KKKIKRAIAEDNRQKRKLEQ 434


>gi|307279184|ref|ZP_07560242.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
 gi|306504309|gb|EFM73521.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
          Length = 452

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 123/400 (30%), Positives = 199/400 (49%), Gaps = 13/400 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P +  A+ + G+ +PT +Q K IP++ +   V G +QTG+GKT +F+LP++ 
Sbjct: 6   SFKQFQFQPFINEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLMD 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNKK 118
            ++     V++    I  P+RELA Q+    ++  +     + +             NK 
Sbjct: 66  KVKPTIDEVQIV---ITAPSRELANQIYQEAQQLARFSQPEIQVSNFVGGTDKQRQLNKL 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +   V+I TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I   +P   
Sbjct: 123 KHQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+   + +L+NP    +   +  +ETI        +   K    +   
Sbjct: 183 QMLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETI---DNWLISTKGKNSNQIIYQ 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +       I+F N K+ V  +   L+ QG  V  IHG+I  R R +++   +    Q 
Sbjct: 240 LLTIGHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQY 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N +VP+  + +IHR+GRTGR G +G A TL +  D + I 
Sbjct: 300 VVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEAIT 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
            IE+L    V +   ++ +    +E  D  +     K+  
Sbjct: 360 QIEQL---GVSFKPKEIKN-GEIVETYDRNRRTKREKSRE 395


>gi|255975964|ref|ZP_05426550.1| helicase [Enterococcus faecalis T2]
 gi|255968836|gb|EET99458.1| helicase [Enterococcus faecalis T2]
          Length = 449

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 123/400 (30%), Positives = 199/400 (49%), Gaps = 13/400 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P +  A+ + G+ +PT +Q K IP++ +   V G +QTG+GKT +F+LP++ 
Sbjct: 3   SFKQFQFQPFINEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLMD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNKK 118
            ++     V++    I  P+RELA Q+    ++  +     + +             NK 
Sbjct: 63  KVKPTIDEVQIV---ITAPSRELANQIYQEAQQLARFSQPEIQVSNFVGGTDKQRQLNKL 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +   V+I TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I   +P   
Sbjct: 120 KHQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+   + +L+NP    +   +  +ETI        +   K    +   
Sbjct: 180 QMLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETI---DNWLISTKGKNSNQIIYQ 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +       I+F N K+ V  +   L+ QG  V  IHG+I  R R +++   +    Q 
Sbjct: 237 LLTIGHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQY 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N +VP+  + +IHR+GRTGR G +G A TL +  D + I 
Sbjct: 297 VVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEAIT 356

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
            IE+L    V +   ++ +    +E  D  +     K+  
Sbjct: 357 QIEQL---GVSFKPKEIKN-GEIVETYDRNRRTKREKSRE 392


>gi|308808320|ref|XP_003081470.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
 gi|116059933|emb|CAL55992.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
          Length = 777

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 110/390 (28%), Positives = 189/390 (48%), Gaps = 8/390 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            FA L LS   +  +   G+   T +Q + +P +L   DV G A+TG+GKT +F++P   
Sbjct: 167 TFASLELSAPTMRGIESMGFTTMTEVQARCVPPLLAGKDVLGAARTGSGKTLAFLVPSAE 226

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +             ++L PTRELA Q+ +  ++  + ++ T  L+IGG    A+ ++L 
Sbjct: 227 LLYHAKFMPRNGTGVMVLSPTRELALQIYNVAQQLMEKHSQTHGLIIGGANRRAEAERLI 286

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNI-EILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G ++L+ TPGR+LDH    +    +  ++ V+DEADRMLD+GF   ++ I  ++P  RQ
Sbjct: 287 KGVNLLVATPGRLLDHMQNTRGFTFSSLKVFVMDEADRMLDIGFEEEMRTIVKMLPKERQ 346

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT T +++                  S    T            S++  LL    
Sbjct: 347 TMLFSATQTTKVED-LARLSLKSPIYIGVDDSRAVSTASGVEQGYCVVPSEQRFLLLFTF 405

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  ++F +   +V      L      V  IHG   Q+ R      F +    ++
Sbjct: 406 LKKNLKKKIMVFFSSCNSVKYHAELLNYIDIPVSDIHGKQKQQRRTTTFFEFCKAERGIL 465

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHID 358
           + +D+AARGLDIP V  +  +D P+  + YIHR+GRT R     G+A   +  E++  + 
Sbjct: 466 LCTDVAARGLDIPAVDWIIQYDPPDDPKEYIHRVGRTARGTDGKGRALLFLIPEELAFLK 525

Query: 359 AIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
            + K  +  ++        ++++   LEK+
Sbjct: 526 YL-KAAKVPLNEYEFPTKKIANVQSQLEKL 554


>gi|197101741|ref|NP_001127671.1| ATP-dependent RNA helicase DDX19A [Pongo abelii]
 gi|55733629|emb|CAH93491.1| hypothetical protein [Pongo abelii]
          Length = 478

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 104/382 (27%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 92  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 151

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      R P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 152 LSRVEPSD---RYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 208

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 209 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 268

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        L
Sbjct: 269 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 326

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 327 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 386

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 387 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 446

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   +K++ L+ D
Sbjct: 447 SMNILNRIQEHFNRKIERLDTD 468


>gi|120598331|ref|YP_962905.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120558424|gb|ABM24351.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 427

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 147/425 (34%), Positives = 221/425 (52%), Gaps = 24/425 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LG+   ++  + +  YV PTP+Q  TIP VL   DV   A TG+GKTA+F +P+L 
Sbjct: 10  SFAQLGIIAPLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQ 69

Query: 62  ILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQN 116
            L   +   +     R L+L PTRELA QVAD+F  Y  + N    +    GG+   AQ 
Sbjct: 70  QLVDAKTEDKTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQM 129

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  GADVL+ TPGR+LD  +   + +N +  LV+DEADRML +GF   +  +   +P 
Sbjct: 130 QSLRSGADVLVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPA 189

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +QTLLFSAT  +E+++++   L NP   ++ +     E                   L 
Sbjct: 190 KKQTLLFSATFPEEVRELTAKLLNNPLEYQLQS-----EQESTIHQRVITVNRPMKTALL 244

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L  +      +IF + K    +L   L K+G +    HG+  Q +R ++L  FK G I
Sbjct: 245 AHLIKEHQWSQALIFVSAKNTCNHLAQKLSKRGITAEVFHGDKAQGARTRVLDGFKNGEI 304

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARG+DI  +  V NFD+P    +Y+HRIGR+GRAG  G A TL++ ED  H
Sbjct: 305 SVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHH 364

Query: 357 IDAIE-----KLIEKKV------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
              IE     KL+ +++      D +  +L     P+ K +       +K   +PQ +  
Sbjct: 365 FGVIEKKNKLKLVREQIVGFEADDDMPAELLEQAKPVAKPE---GTGKKKRKQLPQANVE 421

Query: 406 FDRRK 410
           F  +K
Sbjct: 422 FWGKK 426


>gi|284036680|ref|YP_003386610.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
 gi|283815973|gb|ADB37811.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
          Length = 535

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 148/477 (31%), Positives = 233/477 (48%), Gaps = 17/477 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  L   ++  V    Y+K TPIQ   IP +L   D+   AQTGTGKTA++++P+L
Sbjct: 1   MTFQEFNLHDDLLAGVDAMNYLKATPIQEMAIPKILAGKDLIASAQTGTGKTAAYLIPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI---GGIPFEAQNK 117
             +           TLIL PTRELA Q+ +  E +G         +     G  ++ Q K
Sbjct: 61  DKISHTAHD--HTSTLILVPTRELAKQIDEQVEGFGYFVQANSIAIYGGGKGDDWDKQRK 118

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE GAD++I TPGR++ H   G +  + I+ LV+DEAD+MLDMGF   I NI   +P  
Sbjct: 119 ALETGADIIIATPGRLIAHMQLGYVKFDKIDYLVLDEADKMLDMGFSDDIMNIVEKIPAK 178

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM +++++ S+  L +P+ I +    S                 K   L   
Sbjct: 179 RQTLLFSATMPNKIREFSKKLLTDPEEIRLAV--SKPAAGIDQQFYMAFDNQKLPLLAHL 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  S   +++ ++F ++K  V ++  +L K  +    I  +++Q  R  +L +FK     
Sbjct: 237 IKNSTKPVQSMVLFTSRKSEVNSIVRALSKLNYEARGISSDLEQDDREVVLRDFKNKAFP 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ +RG+DI ++ HV N+D+P  AE+Y+HRIGRT RA   G A T V+ +D   I
Sbjct: 297 ILVATDVLSRGIDIDNLTHVVNYDIPRDAEDYVHRIGRTARAATTGTAITFVSDQDQNRI 356

Query: 358 DAIEKLIEKKVDW--LNGDLSSLNPPL--------EKIDIAQHNHARKNNPIPQKSTGFD 407
            +IEKLIE++VD   +  +L     P+         + D ++   AR  N   +      
Sbjct: 357 VSIEKLIEREVDKQAITEELGMGKSPVFDPKRFSGRRGDSSRGGSARGANAAGKGGRDGR 416

Query: 408 RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            ++       S     +     +   D   +D      R        P N   +  +
Sbjct: 417 AKRNGRRDNGSDRSGSDRSGSDRSGSDRSGSDRSQSERRNEPRNGQAPTNGAAVPAE 473


>gi|198424759|ref|XP_002127650.1| PREDICTED: similar to Ddx10 protein [Ciona intestinalis]
          Length = 736

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 106/404 (26%), Positives = 184/404 (45%), Gaps = 6/404 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-L 60
            F +   + K    +  AG+V  T IQ   I   +   D+ G A+TG+GKT +F++P+  
Sbjct: 49  KFEEFPFATKTKAGLRKAGFVSLTAIQRAAIKPAMLGKDILGAAKTGSGKTLAFIIPILE 108

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + +     +  P  L++ PTRELA Q+ +  +K G  +N +  LLIGG   + +   + 
Sbjct: 109 CLHKHNWNSLDGPGALVISPTRELAFQIFEVLKKVGGKHNFSAGLLIGGNNVKEEAHSVG 168

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      +          MNN+++L++DEADR+LDMGF   +  I   +P  RQT
Sbjct: 169 KTNIIICTPGRLLQHMDTTSYFHMNNLKMLILDEADRILDMGFKTTLDAIIENLPSERQT 228

Query: 181 LLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT T  ++     +          +    +                K   L   + 
Sbjct: 229 LLFSATQTKSVKDLARLSLRDPAYISVHSEAKHSTPQGLTQRFICCELKDKLNVLFSFIR 288

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q +     +   ++   +       + G  +  +HG ++Q  RM +   F      ++
Sbjct: 289 NHQKSKCLVFVSSCKQVQFIFAAFCKLRPGTPMLHLHGRMNQLRRMSVYQEFCRKKFAVL 348

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD P++  V   D P  A+ YIHR GRT R   +G +  ++   + + +  
Sbjct: 349 VATDIAARGLDFPEIDWVVQLDCPEDADTYIHRAGRTARYNGNGNSLLVLTPTEKEAM-- 406

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           ++ L  KKV  L  ++ S    L KID    ++  ++    +K+
Sbjct: 407 LKHLQNKKVPILKSEIQS--NKLGKIDRKLQSYCAEDKEFKEKA 448


>gi|170575130|ref|XP_001893112.1| Probable ATP-dependent RNA helicase p47 homolog [Brugia malayi]
 gi|158601044|gb|EDP38054.1| Probable ATP-dependent RNA helicase p47 homolog, putative [Brugia
           malayi]
          Length = 710

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 163/375 (43%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 44  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDIVCQAKSGMGKTAVFVLATLQQ 103

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE     V +             ++  + F KY     + V      I  + +  K    
Sbjct: 104 LEPVDGEVSVLVMCHTRELAFQISKEYERFSKYIPGVRIAVFFGGIPIKKDEETLKNNTP 163

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +         L N    ++ +    + D      +Q I  + P  +Q ++
Sbjct: 164 HIVVGTPGRTLQLARQGSLKLKNIKYFVLDECDKMIGDNDMRRDVQEIVKMTPQEKQVMM 223

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +L+ V + F+Q+P  + V+  +               +  K   LL+     Q
Sbjct: 224 FSATLPRDLRVVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKLKETEKNKKLLEL--LDQ 281

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +    L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 282 LEFNQVVIFVRSVQRCGALHTLLSEQNFPSIAIHRGMPQEERLSRYQQFKDFQKRILVAT 341

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 342 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 401

Query: 362 KLIEKKVDWLNGDLS 376
              +  V  L  ++ 
Sbjct: 402 DRFDVNVTELPAEIE 416


>gi|38569505|ref|NP_008941.2| probable ATP-dependent RNA helicase DDX52 [Homo sapiens]
 gi|296439375|sp|Q9Y2R4|DDX52_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX52; AltName:
           Full=ATP-dependent RNA helicase ROK1-like; AltName:
           Full=DEAD box protein 52
          Length = 599

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 113/442 (25%), Positives = 209/442 (47%), Gaps = 29/442 (6%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     ++ +++  +LDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 162 TFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 221

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L++   +      LI+ PTRELA+Q+     K  +        +    +  +   
Sbjct: 222 PILMQLKQPANKGFR--ALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFG 279

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++    +    ++  ++E LV+DE+D++ + G   +        
Sbjct: 280 PKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIF 339

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT   ++++  +  L N   + +   +S  ET+E   +   ++  K
Sbjct: 340 LACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSETGK 399

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +  +     ++F    +    L H L  +G +V  IH    Q+ R   + +
Sbjct: 400 LLAMRELVKKGFNPP--VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHS 457

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   
Sbjct: 458 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFT 517

Query: 351 KEDIKHIDAIEKLIEKK----VDWLNG--------DLSSLNPPLEKIDIAQHNH--ARKN 396
           ++D   + ++  +I++      +++ G            +  PLE+  I+        K 
Sbjct: 518 EDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPKCFLEKA 577

Query: 397 NPIPQKSTGFDRRKKNYSSQKS 418
               +K TG + +KK     KS
Sbjct: 578 KDKQKKVTGQNSKKKVALEDKS 599


>gi|297833724|ref|XP_002884744.1| hypothetical protein ARALYDRAFT_317764 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330584|gb|EFH61003.1| hypothetical protein ARALYDRAFT_317764 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 930

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 107/381 (28%), Positives = 181/381 (47%), Gaps = 36/381 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--L 60
           +   GL+ K++  +    YVKP PIQ + +P+++   D  GIA TG+GKT +FVLPM   
Sbjct: 339 WHQTGLTSKILDTLKKLNYVKPMPIQAQALPIIMSGRDCIGIANTGSGKTLAFVLPMLRH 398

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +        P  L++ PTREL  Q+  + +++ K   +    + GG     Q  +L+
Sbjct: 399 IKDQPPIEAGDGPIGLVMAPTRELVQQIHSDIKRFAKALGVRCVAVYGGSGVAQQINELK 458

Query: 121 RGADVLICTPGRILDHFNR---GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RG ++++CTPGR++D           +  +  LV+DEADRM DMGF P I  I   +   
Sbjct: 459 RGTEIVVCTPGRMIDVLCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 518

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT   +++ ++   +  P  I+V   S   +      +      S++ + L +
Sbjct: 519 RQTVLFSATFPRQVETLARKVVDKPVEIQVGGRSVVNKD--IIQLVEIRPESERFSRLLE 576

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL         ++F   ++  ++   +         ++                      
Sbjct: 577 LLGEWYEKGKVLVFFRSQEKSLSEFKNNVCNLLIATSVAAR------------------- 617

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
                     GLD+ ++  V NFD PN  E+Y+HR+GRTGRAGR G A T ++++D K+ 
Sbjct: 618 ----------GLDVKELELVVNFDPPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYA 667

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K +E     +  D+ ++
Sbjct: 668 PDLVKALELSEQPVPDDVKAV 688


>gi|66800711|ref|XP_629281.1| hypothetical protein DDB_G0292992 [Dictyostelium discoideum AX4]
 gi|74996456|sp|Q54CD8|DDX54_DICDI RecName: Full=ATP-dependent RNA helicase ddx54; AltName:
           Full=ATP-dependent RNA helicase helA; AltName: Full=DEAD
           box protein 54
 gi|60462646|gb|EAL60848.1| hypothetical protein DDB_G0292992 [Dictyostelium discoideum AX4]
          Length = 1091

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 132/404 (32%), Positives = 212/404 (52%), Gaps = 26/404 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L+  ++ A+L  G+  PTPIQ K+IP++L  HD+ G+A+TG+GKT +FV+PM+  
Sbjct: 232 FQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQK 291

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L      V   R +IL PTRELA Q     + + +   L   L++GG   E Q   L R 
Sbjct: 292 LGDHSTTVG-VRAVILSPTRELAIQTFKVVKDFSQGTQLRTILIVGGDSMEDQFTDLARN 350

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++ H     + ++ ++ +V DEADR+ +MGF   +  I S +   RQTLL
Sbjct: 351 PDIIIATPGRLMHHLLETGMSLSKVQYIVFDEADRLFEMGFNEQLTEILSKLSENRQTLL 410

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAET------------------------IE 218
           FSAT+   L       L NPK I ++T +  +E                         I 
Sbjct: 411 FSATLPSLLVDFVRAGLNNPKLINLDTDTKISENLSLSFFTLRHEEKLGVLLFLLKDIIY 470

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
                   + +       +  Q Q    + IIF + K +V  +   LE+ G +   IHG 
Sbjct: 471 KKPQLPTTETTTTTTTNNESNQQQQKKSSTIIFVSTKYHVEFIHILLERAGIASTYIHGY 530

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
           +D  +R   L+ F+   + +MV +DLAARG+DIP + +V NFD P + + +IHR+GR  R
Sbjct: 531 LDPVARKINLAKFRSHQVGVMVVTDLAARGIDIPLLDNVINFDFPPKEKIFIHRVGRVAR 590

Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKLIEKK-VDWLNGDLSSLNPP 381
           AGR G A++LV+ +++ ++  +   + +K ++    +  ++N P
Sbjct: 591 AGRSGIAYSLVSPDEVPYMIDLHLYLGRKFLNKFQYEGQTINDP 634


>gi|209881121|ref|XP_002141999.1| ATP-dependent RNA helicae DDX39 [Cryptosporidium muris RN66]
 gi|209557605|gb|EEA07650.1| ATP-dependent RNA helicae DDX39, putative [Cryptosporidium muris
           RN66]
          Length = 427

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 106/378 (28%), Positives = 173/378 (45%), Gaps = 5/378 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ DAG+  P+ +Q +TIP  +   D+   A++G GKTA FVL +L  
Sbjct: 46  FRDFFLKPELIRAIGDAGFEHPSEVQHETIPHAITGVDILCQAKSGMGKTAVFVLSILQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK-KLER 121
           L        +    I            +         N+   ++ GGIP +   +     
Sbjct: 106 LNPDENSKSVECLCIGHTRELAFQVKNEFDRFSKYLKNIKTQVVYGGIPIQKDIELLSSN 165

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFIPYIQNITSLVPFTRQT 180
             ++LI TPGRI+    + KL+ + +   V+DE D+    +     +Q I    P  +Q 
Sbjct: 166 VPNILIGTPGRIIALIRQKKLITDGVVHFVLDECDKCLESLDMRKDVQEIFMSTPRKKQV 225

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSATM  E++ V   F+QNP  I V+  +         +    ++  K   L    L 
Sbjct: 226 MMFSATMVKEIRDVCRKFMQNPVEIFVDDETKLTLHGLLQYYVKLSETEKNRRLTD--LL 283

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF         L + L +  F    IH  + Q+ R+     FK    ++MV
Sbjct: 284 DLLEFNQVIIFVKSVSRAQALHNLLTECSFPSICIHAGLSQQERISRYQQFKNFEKRIMV 343

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+DL  RG+DI  V  V N+D+P   ++Y+HR+GR GR G  G A TLVA + D + ++ 
Sbjct: 344 ATDLFGRGIDIERVNIVINYDMPENTDSYLHRVGRAGRFGTKGLAITLVASQTDSQILND 403

Query: 360 IEKLIEKKVDWLNGDLSS 377
           ++   E  +  +   + +
Sbjct: 404 VQSRFEVNIAEMPSQIDT 421


>gi|154345772|ref|XP_001568823.1| DEAD box RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134066165|emb|CAM43955.1| putative DEAD box RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 654

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 92/383 (24%), Positives = 164/383 (42%), Gaps = 5/383 (1%)

Query: 2   DFADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           D+  L L+  +V A+  +  + + TPIQ + IP  LQ  D+   A+TG GKT +F++P++
Sbjct: 160 DYKSLRLNAHIVSALEQEFKFTELTPIQSRCIPAALQGRDLLAEAKTGAGKTLAFLIPIV 219

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I+ +   R       I+           +        +       +  I  +++N++  
Sbjct: 220 EIVCRSGFRPSNGTAAIIIGPTRELCLQIEGVLLKLLKHFNGSVTFLCCIGGQSRNQEGF 279

Query: 121 R----GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +       V+      +            N+ +L +DEADR+LD GF   ++ I +L+P 
Sbjct: 280 KLANGVMIVVASPGRLLDHLKLTADWHTKNLLLLAVDEADRVLDNGFEEDMREIVALLPK 339

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT LFSAT T  +++++                    T++          S++  L+ 
Sbjct: 340 NRQTFLFSATQTTRVEQLARISFHKTPVFISMKSKKDKATVDTLEQGYVVCASEQRLLVL 399

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                ++  K  I+F + + +V   C           A HG   Q  R      F     
Sbjct: 400 YHFVRKNLKKKIIVFFSSRNSVSFHCELFNYIDVPCIAFHGKQKQHQRSATYMQFCNAPS 459

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++  +D+AARGLDIP+V  +  FD P+    Y+HR+GRT RAGR G A   +  ++   
Sbjct: 460 GVLFTTDVAARGLDIPEVDWIVQFDPPDDPVKYVHRVGRTARAGRCGNALMFLLPQEELF 519

Query: 357 IDAIEKLIEKKVDWLNGDLSSLN 379
           +  +      +V+    D++ + 
Sbjct: 520 LRYLYDDANVRVNEYTFDVAKIK 542


>gi|145530157|ref|XP_001450856.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418489|emb|CAK83459.1| unnamed protein product [Paramecium tetraurelia]
          Length = 696

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 120/458 (26%), Positives = 222/458 (48%), Gaps = 25/458 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF DL +S   + A+    ++K T IQ   IP  L   D+ G ++TG+GKT S++LP++
Sbjct: 56  IDFEDLPISTNTLRALKQRKFIKMTEIQRCVIPHALAERDILGASKTGSGKTLSYLLPLI 115

Query: 61  TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L   +         LI+ PTRELA QV + F+     + L++ALLIGG  ++ +  ++
Sbjct: 116 ENLYVNKWTPLDGLGALIILPTRELAMQVFEVFKSLNTYHILSMALLIGGKNYQYERDRI 175

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++      +           NN+++LV+DEAD ML++GF   ++ I + +P  +Q
Sbjct: 176 TGMNVIICTPGRLLQHFEESPGFDANNLKVLVLDEADMMLELGFWGPLKAIMNYLPKEKQ 235

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT+   + ++ +  LQNP+ I ++   +T    +   V +     ++  ++  + 
Sbjct: 236 TMLFSATLNQTIHQLCKISLQNPESIFLHEKLATDSNEQTDNVMSTPNKLQQFYIVTPIE 295

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQG-----------FSVCAIHGNIDQRSRMKIL 288
           +  D + + I   N++K V+ +    + +              +  +HG   Q  R  I 
Sbjct: 296 EKIDVLFSFIKSHNKQKIVIFVSTCKQVRYLFEVFRKLKLGMLLYELHGRQKQDKRTAIF 355

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             F E     +  +++A+RGLD P V  V  FD P+    Y+HR+GRT R    G +   
Sbjct: 356 FTFSEKKAAALFTTNIASRGLDFPKVDWVIQFDCPDDPSTYVHRVGRTARYIAGGFSMLF 415

Query: 349 VAKEDIKHIDAI-EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           +   ++K ID + +K +E K  +LN +        +++ I Q   +  +  I  K     
Sbjct: 416 LLPSEVKFIDKVKQKGVEIKQKFLNSN--------KQLTIKQTIQSLVSENIELKYLA-- 465

Query: 408 RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGF 445
             ++ + S    + +   ++I KL++   +  A+S+G 
Sbjct: 466 --QRAFISYVRSVDINADKEIFKLKEIKTDLLAESMGL 501


>gi|58584965|ref|YP_198538.1| superfamily II DNA/RNA helicase [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|58419281|gb|AAW71296.1| Superfamily II DNA/RNA helicase [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
          Length = 408

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 127/359 (35%), Positives = 189/359 (52%), Gaps = 6/359 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++GL   +  A+    +  PTP+Q + IPL L+  D+ G AQTGTGKT +F +P++ 
Sbjct: 3   SFYEMGLPLLLAQALDKNSFSVPTPVQAQAIPLALKGKDILGSAQTGTGKTLAFAIPLIA 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L            +I+           +  +   KN  L +ALLIGG P   Q  +L+R
Sbjct: 63  KLLGEPNAST--ALVIVPTRELAQQVTNEIGKLLLKNSVLKIALLIGGEPIFRQLNQLQR 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRI+DH  R  L+ NN+  LV+DE DRM DMGF   I+ I   +P  RQ L
Sbjct: 121 RPRIVIGTPGRIIDHIERKTLITNNVSTLVLDEVDRMFDMGFGIQIEGIMKYLPKMRQNL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  ++ K++E +   P+R           T            S+     + + Q 
Sbjct: 181 MFSATLPGDIVKLAEKYSNQPER----VSVENEATTSVKIKQEIIYASESEKYGKLVTQL 236

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + I+F   K+    L + L K   S  AIHG++ QR R +++++F+ G  Q+MVA
Sbjct: 237 YQRKGSIIVFVRTKQRADQLAYKLRKDNHSALAIHGDLKQRKRKRVINSFRRGHNQIMVA 296

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +D+A+RGLDIP + HV N+D P    NYIHR GRT RAG  G A + +  +D K +  +
Sbjct: 297 TDVASRGLDIPHIQHVINYDAPESQANYIHRTGRTARAGAEGYALSFITSQDKKRLPTL 355


>gi|47214951|emb|CAG10773.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 557

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 109/375 (29%), Positives = 170/375 (45%), Gaps = 35/375 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +      V+  +    + +PTPIQ +  P+ L   D+ GIAQTG+GKT +    + 
Sbjct: 93  LKFHEAAFPSYVMEVISKQNWTEPTPIQSQGWPVALGGKDMVGIAQTGSGKTLAVTFHVC 152

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +         P+ L+L PTRELA QV     +YG+   L    + GG P   Q + LE
Sbjct: 153 LSVCPSVPPSLRPKCLVLAPTRELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLE 212

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG ++ I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I   +  +   
Sbjct: 213 RGVEICIATPGRLIDFLECGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRLSANH 272

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +                                               +   +      
Sbjct: 273 NIL-----------------------------------QIVDVCSDMEKEDKLIRLLEEI 297

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +     IIF   K+    L   + + G+    IHG+  Q+ R  +L+ F+ G   +++
Sbjct: 298 MSEKENKTIIFVETKRRCDELTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILI 357

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     ++K    +
Sbjct: 358 ATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAGDL 417

Query: 361 EKLIEKKVDWLNGDL 375
             ++ +    +N  L
Sbjct: 418 ISVLREANQAINPKL 432


>gi|324506443|gb|ADY42751.1| ATP-dependent RNA helicase DDX17 [Ascaris suum]
          Length = 543

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 129/382 (33%), Positives = 199/382 (52%), Gaps = 4/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +      +   +  + + KPT IQ  + P+ +   D+  IA+TG+GKT +F+LP + 
Sbjct: 113 EFTEANFPAPITDLLYGS-FQKPTIIQSISWPIAMSGRDIVSIAKTGSGKTLAFILPAIV 171

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                +AR     P  L+L PTRELA QV D  + Y K    ++  L GG P   Q + L
Sbjct: 172 HTANQQARSHREGPSVLVLLPTRELAQQVQDVAKDYCKVMGQSLTCLFGGAPKSGQARDL 231

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG DV+I TPGR++D    GK  +     LV+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 232 ERGVDVIIATPGRLMDFLESGKTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 291

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQL 238
           TL+FSAT   +++K++ +F  +   + V +    A       V    + SK+   +    
Sbjct: 292 TLMFSATWPKDVRKLAMDFQTDAAHLNVGSLELAANHNITQIVEVLEESSKQQRLISILS 351

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               +     IIF   K+   +L   + + G+    IHG+  Q  R   L  FK G   +
Sbjct: 352 DIMSEPECKTIIFVETKRKADDLTRWMRRDGWPALCIHGDKGQSERDWALGEFKAGKTPI 411

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLD+ D+ +V N+D  N +E+Y+HRIGRTGR  + G A+T     +     
Sbjct: 412 LLATDVAARGLDVDDIKYVINYDYSNNSEDYVHRIGRTGRCEKRGTAYTFFTYANGPKAR 471

Query: 359 AIEKLIEKKVDWLNGDLSSLNP 380
            + K++++    +  +L  L  
Sbjct: 472 DLIKVLQEANQIVPPELCQLAK 493


>gi|149633893|ref|XP_001512924.1| PREDICTED: similar to helicase like protein 2 [Ornithorhynchus
           anatinus]
          Length = 651

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 130/396 (32%), Positives = 208/396 (52%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 167 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 226

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 227 QIYTDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVV 286

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 287 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 346

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 347 IRRIVEQDTMPQKGIRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 406

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 407 WVEESDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 464

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 465 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 524

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   + +I     +  L+ +    +   L ++
Sbjct: 525 GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 560


>gi|323494504|ref|ZP_08099609.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323311231|gb|EGA64390.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 416

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 141/417 (33%), Positives = 221/417 (52%), Gaps = 16/417 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL P +V  + +  Y +PTPIQ   IP VL   D+ G A TG+GKTA+F LP+L 
Sbjct: 9   TFADLGLLPTLVERLEELEYSQPTPIQSYAIPHVLDGRDIVGGANTGSGKTAAFSLPILQ 68

Query: 62  ILEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQ 115
            + +       R      LIL PTRELA+QVA N + Y  +         + GG+    Q
Sbjct: 69  KILQQDASDNRRGNYVSHLILVPTRELASQVAYNVKSYSYHLRDKVKTVAVFGGVSVNPQ 128

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G+D+++ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  I  L+P
Sbjct: 129 MLALRGGSDIVVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTDELNKILELLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +QTLLFSAT  D++  ++++ L+ P  +++ +  ++        V    + +    L+
Sbjct: 189 EKKQTLLFSATFPDKVTTLAQHLLREPVEVQLQSAEASTLVQRVFSVNKGEKTAVLAHLI 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q        +  +IF N K    +L   L K+G +    HG+  Q +R ++L  FK G 
Sbjct: 249 KQHQW-----RQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLEGFKSGE 303

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           IQ+++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G   +L+  +D  
Sbjct: 304 IQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDDYH 363

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           H   IEK  + K       ++      ++ +        +  P     TG  ++K+N
Sbjct: 364 HFKVIEK--KNKFQLEREQVAGFEVEDDQSEAYFLPMKPRAKPA---GTGKKKKKRN 415


>gi|297832726|ref|XP_002884245.1| DEAD/DEAH box helicase family protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330085|gb|EFH60504.1| DEAD/DEAH box helicase family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 109/399 (27%), Positives = 189/399 (47%), Gaps = 11/399 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA  GL PK++  +  AGY  PTPIQ++ IP  L  + +   A TG+GKTASF++P++
Sbjct: 110 LTFASCGLPPKLLLNLETAGYDFPTPIQMQAIPAALSGNSLLASADTGSGKTASFLVPII 169

Query: 61  TILEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +          +  R P  ++L PTREL  Q+ +  +  GK      AL++GG P   Q 
Sbjct: 170 SRCTTYRSEHPSDQRNPLAMVLAPTRELCVQIENQAKVLGKGLPFKTALVVGGDPMSGQL 229

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            ++++G +++I TPGR++D   +  + ++NI   V+DE D ML  GF   +         
Sbjct: 230 YRIQQGVELIIGTPGRVVDLLVKHAIELDNIMTFVLDEVDCMLQRGFRDLV-MQIFQALS 288

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q LLFSAT++ E++KV  +  +    + +  P+   + +    +   A+  K+     
Sbjct: 289 QPQVLLFSATVSREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDI 348

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
              Q+       +   ++    +         G    +IHG    + R  ++ +F  G +
Sbjct: 349 LRSQNHFKPPAVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGDV 408

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++V++ +  RG+D+  V  V  FD+P+  + YIH IGR  R G  G A   V +ED   
Sbjct: 409 PVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAILFVNEEDRNL 468

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
              +   ++     +  +L +L           HN  R+
Sbjct: 469 FPDLVAALKSSGAAIPKELINLTSK------EMHNKKRR 501


>gi|291004226|ref|ZP_06562199.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 491

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 136/407 (33%), Positives = 210/407 (51%), Gaps = 11/407 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  ++V A+ D G  +  PIQ  TIP  L   DV G  QTG+GKT +F LP+   
Sbjct: 48  FDSLGLPERLVRALGDLGMTEAFPIQAATIPDALGGRDVLGRGQTGSGKTLAFGLPL-LA 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++   AR   PR L+L PTRELA QV D+ +   K   L V  ++GG+ F  Q   L RG
Sbjct: 107 MQGSSARPLHPRGLVLVPTRELATQVTDSLKPLAKALGLYVREVVGGMSFSRQADTLRRG 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVL+ TPGR+ DH  +G  +++ +E   +DEAD+M DMGF+P ++ +  LVP   Q LL
Sbjct: 167 VDVLVATPGRLSDHVRQGTCVLSEVERTALDEADQMADMGFLPQVRELLDLVPADGQRLL 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  ++ K+   ++ +P    +  P+++ ++++H  +   A+  +            
Sbjct: 227 FSATLDGDVDKLVHEYMTDPVVHSLAPPAASVDSMDHHQLLVTAEQKQDVLARI-----G 281

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F   K +   L   L   G    A+HG   Q +R +IL  F++G    +VA+
Sbjct: 282 AREGRTIMFVRTKHHADRLTRKLRAAGVRAGALHGGKAQNARSRILEEFRQGGTTTLVAT 341

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE- 361
           ++AARG+ + DV  V + + P   ++Y+HR GRT RAG  G   TLV  +  +   A+  
Sbjct: 342 NVAARGIHVDDVSLVVHVEPPADPKDYLHRAGRTARAGATGTVVTLVTDDQKRAFRAMTA 401

Query: 362 ----KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
               +    KV   + +L+ L    E   IA     R  +P   + +
Sbjct: 402 KAGVEATATKVAPADEELARLTGAREPSGIAVTEPKRGESPRGGRGS 448


>gi|168021219|ref|XP_001763139.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685622|gb|EDQ72016.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 494

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 108/389 (27%), Positives = 184/389 (47%), Gaps = 5/389 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L +S     A+ D G+   T IQ ++IP +L   DV G A+TG+GKT SFV+P + 
Sbjct: 5   SFESLPVSEPTKNALKDTGFSHMTEIQARSIPQLLTGRDVLGAARTGSGKTLSFVVPAVE 64

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-L 119
           +L       R     +I+ PTRELA Q+        K +  T  +++GG     + +K  
Sbjct: 65  LLFHAHFMPRNGAGVIIISPTRELAMQIYGVARDILKYHKQTHGIVMGGANRRTEAEKLA 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    ++      +    N    +  N++ LVIDEADR+L++GF   ++ I  L+P  RQ
Sbjct: 125 KGVNFLVATPGRLLDHLQNTKGFIFKNLKCLVIDEADRILEIGFEEEMKQIIKLLPKERQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT T +++ ++    +            +  T+E          S +  LL    
Sbjct: 185 TVLFSATQTTKVEDLARVSFKKAPLYIGVDDGRSKATVEGLEQGYCVVSSAERFLLLFTF 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  ++F +   +V      L         IHG   Q+ R      F      ++
Sbjct: 245 LKKNLKKKIMVFFSSCNSVKFHSELLNYIDIPCLDIHGKQKQQKRTSTYFEFCNAEKGIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHID 358
           + +D+AARGLDIP V  +  +D P+    YIHR+GRT R  G  G+A   +  E++  + 
Sbjct: 305 LCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGEGSQGRALLFLIPEELGFLK 364

Query: 359 AIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            ++  K+   + ++ +  ++++   LEK+
Sbjct: 365 YLKGAKVPLNEYEFPSNKIANVQSQLEKL 393


>gi|134102389|ref|YP_001108050.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915012|emb|CAM05125.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 496

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 136/407 (33%), Positives = 210/407 (51%), Gaps = 11/407 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL  ++V A+ D G  +  PIQ  TIP  L   DV G  QTG+GKT +F LP+   
Sbjct: 17  FDSLGLPERLVRALGDLGMTEAFPIQAATIPDALGGRDVLGRGQTGSGKTLAFGLPL-LA 75

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++   AR   PR L+L PTRELA QV D+ +   K   L V  ++GG+ F  Q   L RG
Sbjct: 76  MQGSSARPLHPRGLVLVPTRELATQVTDSLKPLAKALGLYVREVVGGMSFSRQADTLRRG 135

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVL+ TPGR+ DH  +G  +++ +E   +DEAD+M DMGF+P ++ +  LVP   Q LL
Sbjct: 136 VDVLVATPGRLSDHVRQGTCVLSEVERTALDEADQMADMGFLPQVRELLDLVPADGQRLL 195

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  ++ K+   ++ +P    +  P+++ ++++H  +   A+  +            
Sbjct: 196 FSATLDGDVDKLVHEYMTDPVVHSLAPPAASVDSMDHHQLLVTAEQKQDVLARI-----G 250

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F   K +   L   L   G    A+HG   Q +R +IL  F++G    +VA+
Sbjct: 251 AREGRTIMFVRTKHHADRLTRKLRAAGVRAGALHGGKAQNARSRILEEFRQGGTTTLVAT 310

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE- 361
           ++AARG+ + DV  V + + P   ++Y+HR GRT RAG  G   TLV  +  +   A+  
Sbjct: 311 NVAARGIHVDDVSLVVHVEPPADPKDYLHRAGRTARAGATGTVVTLVTDDQKRAFRAMTA 370

Query: 362 ----KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
               +    KV   + +L+ L    E   IA     R  +P   + +
Sbjct: 371 KAGVEATATKVAPADEELARLTGAREPSGIAVTEPKRGESPRGGRGS 417


>gi|302533878|ref|ZP_07286220.1| DEAD-box RNA helicase [Streptomyces sp. C]
 gi|302442773|gb|EFL14589.1| DEAD-box RNA helicase [Streptomyces sp. C]
          Length = 465

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 128/408 (31%), Positives = 208/408 (50%), Gaps = 11/408 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ +   ++  +   G  +P PIQ  T+P  L   D+ G  +TG+GKT +F L +L  
Sbjct: 58  FEDMDMPEALLKTLAAQGVTEPFPIQAATLPNSLAGRDLLGRGRTGSGKTLAFGLALLAR 117

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA+   P  ++L PTRELA QV D+   Y  + NL +A ++GG+    Q   L RG
Sbjct: 118 TAGRRAQPTAPLAMVLVPTRELAQQVTDSLSPYATSVNLRIATVVGGMSINRQAGALRRG 177

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+VL+ TPGR+ D  +RG   ++ + I V+DEAD+M DMGF+P +  +   V    QT+L
Sbjct: 178 AEVLVATPGRLKDLIDRGDADLSQVSITVLDEADQMTDMGFMPQVTALLKQVAPEGQTML 237

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + K+ + FL +P    V+  +    T+EH  +    +  KK    +      
Sbjct: 238 FSATLDKNIDKLVKMFLDDPVAFSVDPSAGAVSTMEHHVLYVMDETDKKAVATR----IA 293

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F + K+ V  +   L   G     +HG   Q  R + L  FK G +  ++A+
Sbjct: 294 ARDGRVIMFVDTKRGVDRMVKRLLADGVRASGLHGGRSQPQRNRTLDWFKTGEVTALIAT 353

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           ++AARG+ I D+  V N D P   ++Y+HR GRT RAG  G   TLV  +  + +  +  
Sbjct: 354 NVAARGIHIDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPDQKRDMSRL-- 411

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           + +  +      + S +  L ++       AR+ + +P+++ G  R +
Sbjct: 412 MSDAGITPRTAQVKSSDEELSRL-----TGAREPSGVPRRAGGPPRPR 454


>gi|298484971|ref|ZP_07003069.1| ATP-independent RNA helicase DbpA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160525|gb|EFI01548.1| ATP-independent RNA helicase DbpA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 473

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 201/378 (53%), Gaps = 8/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 20  FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++ +    L +  G+ F  Q   LE 
Sbjct: 80  I---NPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 137 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F     R                    Y    ++       +  
Sbjct: 197 LFSATYPVGIKQLSSKF----MRDPQTVKVEALHADSQIEQIFYEISPEQRLEAVVKVLG 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 253 HFRPASCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 313 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 372

Query: 362 KLIEKKVDWLNGDLSSLN 379
           +L +  ++W   D  S+ 
Sbjct: 373 ELQKAPLNWQQYDQLSVK 390


>gi|257482474|ref|ZP_05636515.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330984618|gb|EGH82721.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009703|gb|EGH89759.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 459

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 201/378 (53%), Gaps = 8/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++ +    L +  G+ F  Q   LE 
Sbjct: 66  I---NPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F     R                    Y    ++       +  
Sbjct: 183 LFSATYPVGIKQLSSKF----MRDPQTVKVEALHADSQIEQIFYEISPEQRLEAVVKVLG 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 239 HFRPASCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 299 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 358

Query: 362 KLIEKKVDWLNGDLSSLN 379
           +L +  ++W   D  S+ 
Sbjct: 359 ELQKAPLNWQQYDQLSVK 376


>gi|228477005|ref|ZP_04061643.1| ATP-dependent RNA helicase [Streptococcus salivarius SK126]
 gi|228251024|gb|EEK10195.1| ATP-dependent RNA helicase [Streptococcus salivarius SK126]
          Length = 447

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 115/366 (31%), Positives = 182/366 (49%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ +  + +PTP+Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDFNFKTFIQEALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L      V++    I  P+RELA Q+    ++  K+ +  + ++      + Q +  +
Sbjct: 61  EKLNPKSGDVQVV---ITAPSRELATQIYQATKQIAKHSDTEIRVVNYVGGTDKQRQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++     V+DEAD  +DMGF+  +  I + +P  
Sbjct: 118 LKVAQPHIVIGTPGRIYDLVKSGDLAIHKAHTFVVDEADMTMDMGFLDTVDKIAASLPKE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEQIKTSTVIADTI---DNWLVSTKGRNKNEQIL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K+   +L   L   G  V  IHG I  R R +I++  K+   +
Sbjct: 235 EMLKGMQPYLAMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 RELEKM 360


>gi|300724118|ref|YP_003713435.1| ATP-dependent RNA helicase [Xenorhabdus nematophila ATCC 19061]
 gi|297630652|emb|CBJ91317.1| ATP-dependent RNA helicase [Xenorhabdus nematophila ATCC 19061]
          Length = 446

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 129/387 (33%), Positives = 203/387 (52%), Gaps = 6/387 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F++  L   ++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+++LP + 
Sbjct: 5   NFSEFELDESLLDALNDKGYERPTAIQAAAIPAAMDGRDVLGSAPTGTGKTAAYLLPAIQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVA+  ++   + +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRILILTPTRELAMQVAEQAKELAAHTHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +E L++DEADRMLDMGF   ++ I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFANDVETIAGETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT   + ++  +E  L +P  I+        + I+  +        K   L    L
Sbjct: 185 LLFSATLEGESIRDFAERLLTDPVEIDAEPSRRERKKIQQFYYRADTLEHKMALLC--HL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +  +   I+F  +++ V  +   L + G     + G + Q  R   +    +G + ++
Sbjct: 243 LQKSDVTKSIVFVRKRERVREVADWLSQAGIQAAFLEGEMVQAKRTDAVKRLNDGKVNVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI DV HVFNFD+P  A+ Y+HRIGRT RAGR G A  LV   D   +  
Sbjct: 303 VATDVASRGLDIEDVSHVFNFDLPRTADVYLHRIGRTARAGRKGTAIALVESHDHPLLGK 362

Query: 360 IEKLIEK--KVDWLNGDLSSLNPPLEK 384
           I + + +  K+  ++        P EK
Sbjct: 363 ISRYLNEPMKIRVVDELRPQTKAPSEK 389


>gi|113195544|ref|NP_001037780.1| probable ATP-dependent RNA helicase DDX52 [Danio rerio]
 gi|109150086|gb|AAI17611.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Danio rerio]
 gi|182892172|gb|AAI65190.1| Ddx52 protein [Danio rerio]
          Length = 606

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 110/376 (29%), Positives = 190/376 (50%), Gaps = 15/376 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F +L     L P+++  +  AG+  PTPIQ++ +PL++ + ++   A TG+GKT +F L
Sbjct: 164 TFEELQKEYDLDPRIIHNIKAAGFQTPTPIQMQAVPLMMHKREILACAPTGSGKTMAFCL 223

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L +   +      LI+ PTRELA Q      K  +        +  G    +   
Sbjct: 224 PLLAHLRQPLNKGFR--ALIISPTRELATQTHRELLKLSEGVGFRVHMINKGVEAVKKYG 281

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++   N+    +N  ++E LV+DE+D++ + G   + +      
Sbjct: 282 PKSAKKFDILVTTPNRLIYLLNQDPPAINLSSVEWLVVDESDKLFEDGKTGFREQLATIF 341

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      + +LFSAT   ++++  +  L N   + +   +S AET+E   +   ++  K
Sbjct: 342 LACSSPNVRRVLFSATFATDVERWCKLNLDNLVSVSIGARNSAAETVEQQLLFVGSENGK 401

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+  + L  Q  +   ++F         L H L  +G +V  IH +  Q+ R  ++S+
Sbjct: 402 ILAM--RNLIKQGFLPPVLVFVQSIDRARELYHELVYEGINVDVIHADRTQQQRDNVVSS 459

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   +  V N+D P  A  YIHRIGRTGRAG  GKA T   
Sbjct: 460 FRSGKIWVLICTALLARGIDFKGINLVINYDFPTSAVEYIHRIGRTGRAGHKGKAVTFFT 519

Query: 351 KEDIKHIDAIEKLIEK 366
           ++D   + +I  +I+K
Sbjct: 520 EDDKPLLRSIATVIKK 535


>gi|45768538|gb|AAH67608.1| Ddx52 protein [Danio rerio]
          Length = 501

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 110/376 (29%), Positives = 190/376 (50%), Gaps = 15/376 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F +L     L P+++  +  AG+  PTPIQ++ +PL++ + ++   A TG+GKT +F L
Sbjct: 59  TFEELQKEYDLDPRIIHNIKAAGFQTPTPIQMQAVPLMMHKREILACAPTGSGKTMAFCL 118

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L +   +      LI+ PTRELA Q      K  +        +  G    +   
Sbjct: 119 PLLAHLRQPLNKGFR--ALIISPTRELATQTHRELLKLSEGVGFRVHMINKGVEAVKKYG 176

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++   N+    +N  ++E LV+DE+D++ + G   + +      
Sbjct: 177 PKSAKKFDILVTTPNRLIYLLNQDPPAINLSSVEWLVVDESDKLFEDGKTGFREQLATIF 236

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      + +LFSAT   ++++  +  L N   + +   +S AET+E   +   ++  K
Sbjct: 237 LACSSPNVRRVLFSATFATDVERWCKLNLDNLVSVSIGARNSAAETVEQQLLFVGSENGK 296

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+  + L  Q  +   ++F         L H L  +G +V  IH +  Q+ R  ++S+
Sbjct: 297 ILAM--RNLIKQGFLPPVLVFVQSIDRARELYHELVYEGINVDVIHADRTQQQRDNVVSS 354

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   +  V N+D P  A  YIHRIGRTGRAG  GKA T   
Sbjct: 355 FRSGKIWVLICTALLARGIDFKGINLVINYDFPTSAVEYIHRIGRTGRAGHKGKAVTFFT 414

Query: 351 KEDIKHIDAIEKLIEK 366
           ++D   + +I  +I+K
Sbjct: 415 EDDKPLLRSIATVIKK 430


>gi|33150774|gb|AAP97265.1|AF136175_1 RNA helicase [Homo sapiens]
          Length = 479

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 104/382 (27%), Positives = 177/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 93  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 152

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      R P+ L L PT EL  Q     E+ GK Y               + +K+
Sbjct: 153 LSRVEPSD---RYPQCLCLFPTYELGLQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 209

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 210 SEQIVIGNPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 269

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        L
Sbjct: 270 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 327

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 328 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVVLLSGEMMVEQRAAVIERFREGKEKVL 387

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 388 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 448 SMNILNRIQEHFNKKIERLDTD 469


>gi|81294184|gb|AAI08030.1| Ddx52 protein [Danio rerio]
          Length = 588

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 110/376 (29%), Positives = 190/376 (50%), Gaps = 15/376 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F +L     L P+++  +  AG+  PTPIQ++ +PL++ + ++   A TG+GKT +F L
Sbjct: 164 TFEELQKEYDLDPRIIHNIKAAGFQTPTPIQMQAVPLMMHKREILACAPTGSGKTMAFCL 223

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L +   +      LI+ PTRELA Q      K  +        +  G    +   
Sbjct: 224 PLLAHLRQPLNKGFR--ALIISPTRELATQTHRELLKLSEGVGFRVHMINKGVEAVKKYG 281

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++   N+    +N  ++E LV+DE+D++ + G   + +      
Sbjct: 282 PKSAKKFDILVTTPNRLIYLLNQDPPAINLSSVEWLVVDESDKLFEDGKTGFREQLATIF 341

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      + +LFSAT   ++++  +  L N   + +   +S AET+E   +   ++  K
Sbjct: 342 LACSSPNVRRVLFSATFATDVERWCKLNLDNLVSVSIGARNSAAETVEQQLLFVGSENGK 401

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+  + L  Q  +   ++F         L H L  +G +V  IH +  Q+ R  ++S+
Sbjct: 402 ILAM--RNLIKQGFLPPVLVFVQSIDRARELYHELVYEGINVDVIHADRTQQQRDNVVSS 459

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   +  V N+D P  A  YIHRIGRTGRAG  GKA T   
Sbjct: 460 FRSGKIWVLICTALLARGIDFKGINLVINYDFPTSAVEYIHRIGRTGRAGHKGKAVTFFT 519

Query: 351 KEDIKHIDAIEKLIEK 366
           ++D   + +I  +I+K
Sbjct: 520 EDDKPLLRSIATVIKK 535


>gi|71028514|ref|XP_763900.1| small nuclear ribonucleoprotein [Theileria parva strain Muguga]
 gi|68350854|gb|EAN31617.1| small nuclear ribonucleoprotein, putative [Theileria parva]
          Length = 744

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 118/418 (28%), Positives = 191/418 (45%), Gaps = 28/418 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A+  L  +++ A+  AGY+KPTPIQ++ IP+ L+  D+ GIA TG+GKTA+FVLPMLT
Sbjct: 330 TWAESPLPWELLEAIKKAGYIKPTPIQMQAIPIALEMRDLIGIAVTGSGKTAAFVLPMLT 389

Query: 62  ILE-----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            ++          +  P  L+L P+RELA Q+ D   K+    +     ++GG   E Q 
Sbjct: 390 YVKKLPPLDDETSLDGPYALVLAPSRELALQIYDETVKFSAFCSCRSVAVVGGRNAETQA 449

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L +G +++I TPGR+ D  +R   +++    +++DEADRM+DMGF   ++ I   +P 
Sbjct: 450 FELRKGCEIIIGTPGRVKDCLDRAYTVLSQCNYVILDEADRMIDMGFEDVLKYILDCIPS 509

Query: 177 T--------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
           T                     +    +   +  +    E   +   R            
Sbjct: 510 TNLKDRDESSALQQELSTKAGHRRYRITHMFSATMPPAVEKLTKRYLRAPAFISIGDVGG 569

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
            +           +           +      IIF N KKN   +            ++H
Sbjct: 570 GKTSITQRLDFVQESKKTRHLEETLETLEPPIIIFVNLKKNTDVIAK---HITKIAVSLH 626

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G   Q SR   L+NFK G   ++VA+D+  RGLD+  +  V N+D+P   + Y HRIGRT
Sbjct: 627 GGKTQESREDALNNFKSGVYDILVATDVVGRGLDVEGIKCVINYDMPKDIQTYTHRIGRT 686

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           GRAG  G + + V   D+     + +L+    + +  +LS       K +    N  +
Sbjct: 687 GRAGLKGLSISFVTDADVDLFYDLRQLLISTDNIVPLELSQHPASKVKPNQPHRNITK 744


>gi|295696219|ref|YP_003589457.1| DEAD/DEAH box helicase domain protein [Bacillus tusciae DSM 2912]
 gi|295411821|gb|ADG06313.1| DEAD/DEAH box helicase domain protein [Bacillus tusciae DSM 2912]
          Length = 526

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 153/384 (39%), Positives = 224/384 (58%), Gaps = 9/384 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  LS +V  A+ D G+ +P+PIQ   IPLVLQ  DV G AQTGTGKTA+F +P++ 
Sbjct: 3   TFTDFQLSRRVQQAIDDMGFEEPSPIQAACIPLVLQGKDVIGQAQTGTGKTAAFGVPIIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++  G    R  + LIL PTRELA QVA    K  K   +    + GG     Q + L++
Sbjct: 63  MMGTG----RHVQALILTPTRELAIQVAGELRKIAKYARVRTLPIYGGQSIGHQIRALQQ 118

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V+I TPGR+LDH  RG L ++ +  +V+DEAD MLDMGFI  I+ I    P  RQTL
Sbjct: 119 GVGVVIGTPGRVLDHLRRGTLKLDKVRTVVLDEADEMLDMGFIEDIEAILKETPQERQTL 178

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   E+++++  +++NP+ + VN    T   I       Y    +        +  
Sbjct: 179 LFSATFPHEVKQLAVRYMKNPEHVTVNRGEMTVPLI---DQIYYKVLERNKLESLCRIID 235

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + +  GIIFC  K+ V  L  +L  +G+ V  +HG++ Q  R +++  F+ G I+ +VA
Sbjct: 236 SEDVSLGIIFCRTKRGVDELTEALLARGYLVDGLHGDLSQAQRDRVMKKFRNGDIEFLVA 295

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ +V HV N+D+P   E+Y+HRIGRTGRAGR G A TLV   + K +  IE
Sbjct: 296 TDVAARGIDVTNVTHVINYDIPQDPESYVHRIGRTGRAGRRGLAITLVTPREFKLLKQIE 355

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKI 385
           +  E +   +  ++ +L    E++
Sbjct: 356 R--ETQAPLVGREVPTLADVAERV 377


>gi|304434516|dbj|BAJ15435.1| VASA-like gene [Mytilus galloprovincialis]
          Length = 745

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 137/430 (31%), Positives = 221/430 (51%), Gaps = 22/430 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D GL    +  V  + Y +PTP+Q  +IP+V+   D+   AQTG+GKTA+F+LP+LT
Sbjct: 299 NFDDAGLYDTFLKNVKKSNYDRPTPVQKYSIPIVMSGRDLMACAQTGSGKTAAFLLPVLT 358

Query: 62  ILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +          + V+ P+ L++ PTRELA Q+  + +++     L   +L GG     Q
Sbjct: 359 GMMNNGLTGSSFSVVQEPQALVVAPTRELAVQIFTDAKRFTHGTMLRPVVLYGGTSLGHQ 418

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS--- 172
            + +E+GA +++ TPGR++D   +GK+ +  ++ L++DEADRMLDMGF P I+ I     
Sbjct: 419 LRNVEQGAHIVVGTPGRLIDVIGKGKVSLEKLKYLILDEADRMLDMGFGPEIKKIVHELG 478

Query: 173 -LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTL+FSAT  +E+Q+++  FL +   + V         +            ++
Sbjct: 479 APPKEQRQTLMFSATFPEEIQRLAAEFLNDYLFLTVGRVGGACTDVAQYVHEVPRDQKRQ 538

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                            ++F  QK+N   L   L + GF   +IHG+  Q+ R + L +F
Sbjct: 539 KLCDILSESGT---DKTLVFVEQKRNADFLATYLSQSGFPTTSIHGDRLQQEREEALRDF 595

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   ++VA+ +AARGLDIP V HV N+D+P   + Y+HRIGRTGR G  GK+ +    
Sbjct: 596 KTGRAPILVATSVAARGLDIPLVKHVINYDLPQSIDEYVHRIGRTGRCGNVGKSTSFYTD 655

Query: 352 E-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           + D     A+ +++      +          LE+   +  + A  +N    K  G D RK
Sbjct: 656 DSDGGIAKALLRILADAQQEVPL-------WLEEYAKSSQSTAGFSN-YGGKFGGKDIRK 707

Query: 411 KNYSSQKSHI 420
               ++ +H 
Sbjct: 708 DQPRTRDNHT 717


>gi|223462261|gb|AAI50863.1| Ddx3x protein [Mus musculus]
          Length = 661

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 137/428 (32%), Positives = 216/428 (50%), Gaps = 29/428 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 241 QIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 300

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 301 YGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 360

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 361 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 420

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 421 WVEEIDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH-NHARKNNPIPQ 401
           G A +   + +I     +       +D L      +   LE +    H   + +     +
Sbjct: 539 GLATSFFNERNINITKDL-------LDLLVEAKQEVPSWLENMAFEHHYKGSSRGRSKSR 591

Query: 402 KSTGFDRR 409
            S GF  R
Sbjct: 592 FSGGFGAR 599


>gi|90416956|ref|ZP_01224885.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2207]
 gi|90331303|gb|EAS46547.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2207]
          Length = 584

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 139/373 (37%), Positives = 217/373 (58%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F D  L   ++  +  AG+   TPIQ  ++P  L+ HD+ G AQTGTGKTA+F++ ++  
Sbjct: 58  FHDFDLPLPLLRGIQTAGFQYCTPIQGASLPHTLRGHDMVGKAQTGTGKTAAFLVSIISD 117

Query: 61  --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 +    +   R LIL PTRELA Q+ ++ E+  ++ +L V  L+GG+ +  Q  K
Sbjct: 118 LLKHPVEDERYIGEARALILAPTRELAVQIGEDAEQLVQHTDLKVHTLVGGMDYAKQLHK 177

Query: 119 LER-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           ++R   D+L+ TPGR+LD  +   + ++ +E+LVIDEADRMLDMGFIP ++ +    P  
Sbjct: 178 IKRAHCDILVGTPGRLLDFASNKDVHLDQVEVLVIDEADRMLDMGFIPQVRRLVRATPPK 237

Query: 178 RQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                  FSAT TD++ ++SE +   P ++E+       +T+E     T A        L
Sbjct: 238 EDRQTLLFSATFTDDVMRLSEQWTDKPVKLEMEPERVATDTVEQKIFITTANEK---FAL 294

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            Q +   D +K+ ++F N++     L   L+KQGF V  I G++ Q  RMK L  FK G 
Sbjct: 295 LQNILKSDDVKSVMVFANRRDICRTLFERLKKQGFKVGLIAGDVPQARRMKTLEGFKSGA 354

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +++MVA+D+A RG+ +  V HV NF +P   E+Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 355 LKVMVATDVAGRGIHVNGVSHVINFTLPEEPEDYVHRIGRTGRAGETGISISFACEDDAF 414

Query: 356 HIDAIEKLIEKKV 368
            ++ IEKL++ K+
Sbjct: 415 LLEPIEKLLDMKL 427


>gi|261207791|ref|ZP_05922476.1| helicase [Enterococcus faecium TC 6]
 gi|289566243|ref|ZP_06446675.1| ATP-dependent RNA helicase YqfR [Enterococcus faecium D344SRF]
 gi|294616582|ref|ZP_06696358.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1636]
 gi|260078174|gb|EEW65880.1| helicase [Enterococcus faecium TC 6]
 gi|289161950|gb|EFD09818.1| ATP-dependent RNA helicase YqfR [Enterococcus faecium D344SRF]
 gi|291590532|gb|EFF22265.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1636]
          Length = 449

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 121/365 (33%), Positives = 191/365 (52%), Gaps = 9/365 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F      P +   +   G+ +PT +Q + IPL+ +  ++ G +QTGTGKT +F+LP+  
Sbjct: 3   NFDIFRFKPFINEVLTAKGFKQPTEVQERLIPLIAKGKNIIGQSQTGTGKTHTFLLPLFE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNKK 118
            +   +  V++    I  P+RELAAQ+ +   +  K     + +             N+ 
Sbjct: 63  KINAEKEEVQVV---ITAPSRELAAQIYEAATQIAKFSTPEIRVSNFVGGTDKQRQLNRL 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +   V++ TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I S +P   
Sbjct: 120 HHQQPQVVVGTPGRILDMMNEQALKIHTAFAFVVDEADMTLDMGFLNEVDQIASRLPEKL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+     +++NP   E+   +  +E IE+      +   K    +   
Sbjct: 180 QFLVFSATIPEKLRPFLRKYMENPIIEEIKPKAVISEDIEN---WLISTKGKDENQMIYQ 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +       I+F N K++V  +   L+ QG  V  IHG+I  R R +++   +    Q 
Sbjct: 237 LLTIGHPYLAIVFANTKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLEYQY 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N ++P   + +IHR+GRTGR G  G A TL +  D + ID
Sbjct: 297 VVATDLAARGIDIEGVSHVINAEIPEDLDFFIHRVGRTGRNGLKGTAITLYSPNDEQAID 356

Query: 359 AIEKL 363
           AIEKL
Sbjct: 357 AIEKL 361


>gi|254821954|ref|ZP_05226955.1| RhlE [Mycobacterium intracellulare ATCC 13950]
          Length = 452

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 156/438 (35%), Positives = 229/438 (52%), Gaps = 21/438 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+  ++V A+ + G   P  IQ  T+PL L   D+ G A+TG GKT +F +P+L  
Sbjct: 12  FAQLGVRDEIVRALAEKGIESPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQR 71

Query: 63  LEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKN------YNLTVALLIGGIPFE 113
           +  G A       PR LI+ PTREL  QV D+     K+        L+V  + GG P+E
Sbjct: 72  ITSGTAARPLNGTPRALIVVPTRELCLQVTDDLALAAKHLTADEGRRLSVVPIYGGRPYE 131

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           AQ + L  GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+ I   
Sbjct: 132 AQIEALRAGADVVVGTPGRLLDLSQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQ 191

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ++LFSATM D +  ++  F+  P  I    P S A        A  A    K  
Sbjct: 192 IPVDRQSMLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQYAYRAHALDKVE 251

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L+ ++LQ++      I     K+    +   L ++GF+V A+HG++ Q +R K L  F+ 
Sbjct: 252 LVSRILQAEGRGATMIFT-RTKRTAQKVADELAERGFAVGAVHGDLGQVAREKALKAFRT 310

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I ++VA+D+AARG+DI DV HV N+ +P   + Y+HRIGRTGRAG+ G A TLV  ++
Sbjct: 311 GDIDVLVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKTGVAVTLVDWDE 370

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST-GFDRRKKN 412
           +     I+K +                P E    + H +   + P     T G  R+ + 
Sbjct: 371 LTRWALIDKALGL----------DNPEPAETYSSSPHLYDELSIPADAGGTVGAARKAQG 420

Query: 413 YSSQKSHIPLKESEKISK 430
                     K  +K  K
Sbjct: 421 ARRTGERATQKPGQKSEK 438


>gi|198452859|ref|XP_002137552.1| GA26479 [Drosophila pseudoobscura pseudoobscura]
 gi|198132109|gb|EDY68110.1| GA26479 [Drosophila pseudoobscura pseudoobscura]
          Length = 716

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 112/392 (28%), Positives = 200/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            F+ L   +S   + A+ + G+ + T IQ K++  +L+  D+ G AQTG+GKT +F++P 
Sbjct: 222 SFSSLKGAVSEATLRAIKEMGFSEMTEIQAKSLTPLLKGRDLVGAAQTGSGKTLAFLIPA 281

Query: 60  LTILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K R   R     +I+ PTREL+ Q     ++   +++ T  L++GG   + +++K
Sbjct: 282 VELINKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEK 341

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G ++L+ TPGR +    N    L  N++ L+IDE DR+L++GF   ++ I +L+P  
Sbjct: 342 LGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKR 401

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T  ++ +S+  L++              T++          S+K  L+  
Sbjct: 402 RQTMLFSATQTARIEALSKLALKSEPIYVGVHDDEVTATVDGLEQGYIVCPSEKRLLVLF 461

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V             V +IHG   Q  R      F      
Sbjct: 462 TFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAETG 521

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
           +++ +D+AARGLDIP V  +  +D P+  + YIHR+GRT R  G  G A  L+  E++  
Sbjct: 522 ILLCTDVAARGLDIPQVDWIVQYDPPDDPKEYIHRVGRTARGSGTSGHALLLMRPEELGF 581

Query: 357 IDAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
           +  + K  +  ++        ++ +   LEK+
Sbjct: 582 LRYL-KAAKVPLNEFEFSWQKIADIQLQLEKL 612


>gi|301112328|ref|XP_002905243.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262095573|gb|EEY53625.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 709

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 129/458 (28%), Positives = 226/458 (49%), Gaps = 27/458 (5%)

Query: 2   DFADLGLSPK---------VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKT 52
            FAD+ L            ++  +  + Y +PT +Q++ IP +L R DV   A TG+GKT
Sbjct: 240 SFADMRLDSSASAQQMKRLLLQNIERSEYKEPTSVQMQAIPSLLLRRDVLATAPTGSGKT 299

Query: 53  ASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
           A+F +P+L  L  G       R+++L PTR+LA Q+   F +      L + LL      
Sbjct: 300 AAFAIPILANLAAGSGTSSGIRSIVLAPTRDLAVQIRAEFTRLAAGKKLHITLLSKATAA 359

Query: 113 E---AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY-IQ 168
                   KL    DVLI TP R++      K+ ++ +E++ +DEADR+L++GF+    +
Sbjct: 360 TIASQTKSKLAVNHDVLIATPLRLVHLIQESKVDLSTVEMVCLDEADRLLELGFVEQVDE 419

Query: 169 NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
              +      Q  +FSATM + ++++++  L++P ++ V T ++ A TI+   V    + 
Sbjct: 420 IFAACTHPKVQRAMFSATMLEGVEELAQTVLRDPVKVAVGTKNAGASTIDQKLVFVGKEE 479

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            K  A+ Q L Q         +     +    L H L   G ++ A+H +  +  R  ++
Sbjct: 480 GKLVAMKQLLQQGLQLPALLFVQNK--ERANELYHELLYDGVNIGAVHADRTKEQRDDVI 537

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             F+ G + +++ +DL +RG+D   V  V N+D P  A +YIHRIGRTGR GR GKA TL
Sbjct: 538 RRFRTGEVWVLICTDLMSRGMDFKAVNMVINYDFPQSAVSYIHRIGRTGRNGRKGKAVTL 597

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK---STG 405
             ++D+ ++  I  +++     +   + SL    +K  +++     K  P+  +    +G
Sbjct: 598 FTEDDMVYLRTIANVMKISGCEVPDWMLSL----KKASVSKRKELLKAPPMRHRINTVSG 653

Query: 406 FDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSL 443
           +D ++ N   Q     +K+ +   K   +  E+D   L
Sbjct: 654 YDLQRANRLKQ-----MKQGKTTPKKDGEQSESDPAKL 686


>gi|242032643|ref|XP_002463716.1| hypothetical protein SORBIDRAFT_01g004730 [Sorghum bicolor]
 gi|241917570|gb|EER90714.1| hypothetical protein SORBIDRAFT_01g004730 [Sorghum bicolor]
          Length = 623

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 112/394 (28%), Positives = 200/394 (50%), Gaps = 11/394 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L +S     A+ +  Y   T IQ ++IP +L+  DV G A+TG+GKT +F++P + +
Sbjct: 129 FSELPISELTAKAIREMNYTHLTQIQARSIPHLLEGKDVMGAAKTGSGKTLAFLIPAIEL 188

Query: 63  LEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   R   R    +I + PTRELA Q  +  ++  K ++ T+  +IGG    ++  +L +
Sbjct: 189 LYHLRFSSRNGTGVIVVCPTRELAIQTHNVAKELMKYHSQTLGYVIGGNNRRSEADQLAK 248

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           G ++L+ TPGR +    N    +   ++ LVIDEADR+L+  F   ++ I   +P  RQT
Sbjct: 249 GVNLLVATPGRLLDHLQNTKSFIYKRLKCLVIDEADRILEQNFEEDMKQIFKRLPQNRQT 308

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC------FVATYAQYSKKCAL 234
           +LFSAT T E++K ++   +  +  +        +  +                S+K  L
Sbjct: 309 VLFSATQTPEVEKFAKLSFEKNEESKEKPVYVGVDDDKSKATVEGLQQGYCVISSEKRFL 368

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +      +   K  ++F +   +V      L   G     IHG   Q+ R     +F + 
Sbjct: 369 VLYAFLKKKQNKKIMVFFSSCNSVKFHAELLNFLGIDCSDIHGKQKQQKRTTTFFSFCKA 428

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKED 353
              +++ +++AARGLDIPDV ++  +D P+  ++YIHR+GRT R  +  G A   +  E+
Sbjct: 429 EKGILLCTNVAARGLDIPDVDYIVQYDPPDEPKDYIHRVGRTARGEKGKGSALLFLLPEE 488

Query: 354 IKHIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
           +K +  ++  K+   + ++   ++ +L   LE I
Sbjct: 489 LKFLIYLKAAKVTLTEYEFNQKNVPNLQSHLENI 522


>gi|281358292|ref|ZP_06244774.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281315119|gb|EFA99150.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 542

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 132/369 (35%), Positives = 204/369 (55%), Gaps = 6/369 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F DL L   V   +  AG+   TPIQ  T+P +L+  D+ G AQTGTGKTA+F+L + T 
Sbjct: 127 FLDLPLHEDVQFGIQHAGFEYCTPIQALTLPALLEGRDLAGKAQTGTGKTAAFLLAVFTR 186

Query: 62  --ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                    +   PR L+L PTRELA Q+  + E       LT  ++ GG+  E Q + L
Sbjct: 187 LLNHPLEERKPGCPRALVLAPTRELAMQIQKDAEVLEIFTGLTSVVVFGGMDHEKQRRSL 246

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+  D++I TPGRI+D+   G L ++ +E+LVIDEADRMLDMGFIP ++ I S +P   +
Sbjct: 247 EQPVDLVIGTPGRIIDYSRGGSLKLSKVEVLVIDEADRMLDMGFIPDVKRIVSQLPRKGE 306

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
                 + T  L+              V   S   + +      T+    +   L   L 
Sbjct: 307 RQTLLFSAT--LEDHILRLASGWLAEPVIVESEPEKMVSENIEQTFYSVLRDEKLALLLY 364

Query: 240 QSQDTMKNGIIFCNQKKNVV-NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +    + ++    +K+V   L + L + G+ V  + G+I Q  R+K+L  F+ GT ++
Sbjct: 365 ILRTEPYDRVLIFGNRKDVNLRLQYDLARFGYEVPVLSGDIPQEKRIKVLERFRAGTEKI 424

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+ + DV  V N+D+P RAE+Y+HRIGRTGRAG +GK+ + + +    ++ 
Sbjct: 425 VIATDVAARGIHVDDVSLVINYDLPERAEDYVHRIGRTGRAGHNGKSISFLCEYGAYYLP 484

Query: 359 AIEKLIEKK 367
            IEKL++ +
Sbjct: 485 DIEKLLDVQ 493


>gi|310790877|gb|EFQ26410.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 396

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 133/377 (35%), Positives = 210/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L  +++  V   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 24  SFDDMNLKSELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+  + LIL PTRELA Q+       G   N+     IGG       K L+ 
Sbjct: 84  KIDTN---VKACQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVRDDMKALQD 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I  L+P + Q +
Sbjct: 141 GPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 201 LLSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A
Sbjct: 259 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  ED++ +  IE
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTAEDVRMMREIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 379 QFYSTQIEEMPMNVADL 395


>gi|315084648|gb|EFT56624.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA2]
          Length = 630

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 139/443 (31%), Positives = 217/443 (48%), Gaps = 9/443 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L 
Sbjct: 50  SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 109

Query: 62  ILEKGRARVR-------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L++ PTRELA QV+ +           V  + GG+ +E+
Sbjct: 110 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYES 169

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L+ G DV++ TPGR+LD   R  L +++  I+V+DEAD MLD+GF+P ++N+    
Sbjct: 170 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHERIVVLDEADEMLDLGFLPDVENLIGRT 229

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P +RQT+LFSATM   +                   + T  T+       Y  +      
Sbjct: 230 PASRQTMLFSATMPAPI-MALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIE 288

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +   + ++  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+ G
Sbjct: 289 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 348

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   D+
Sbjct: 349 EATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADV 408

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                I K +  ++       S+       +DI +    +  +P  + +T   RR+  + 
Sbjct: 409 TRWKLINKALNLELSEPVETYSTSPHLYTDLDIPEDAQGQIIDP-EKAATEKKRRQHRHG 467

Query: 415 SQKSHIPLKESEKISKLQQDIQE 437
              SH             +D  +
Sbjct: 468 HDGSHHEKATRRHSRDASKDGDK 490


>gi|313807189|gb|EFS45682.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA2]
 gi|313819383|gb|EFS57097.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA2]
 gi|313820647|gb|EFS58361.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA1]
 gi|313825517|gb|EFS63231.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA1]
 gi|314924891|gb|EFS88722.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA3]
 gi|314978145|gb|EFT22239.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA2]
 gi|314986302|gb|EFT30394.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA2]
 gi|315088606|gb|EFT60582.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA1]
          Length = 564

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 139/443 (31%), Positives = 217/443 (48%), Gaps = 9/443 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L 
Sbjct: 54  SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 113

Query: 62  ILEKGRARVR-------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L++ PTRELA QV+ +           V  + GG+ +E+
Sbjct: 114 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYES 173

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L+ G DV++ TPGR+LD   R  L +++  I+V+DEAD MLD+GF+P ++N+    
Sbjct: 174 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHERIVVLDEADEMLDLGFLPDVENLIGRT 233

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P +RQT+LFSATM   +                   + T  T+       Y  +      
Sbjct: 234 PASRQTMLFSATMPAPI-MALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIE 292

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +   + ++  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+ G
Sbjct: 293 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 352

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   D+
Sbjct: 353 EATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADV 412

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                I K +  ++       S+       +DI +    +  +P  + +T   RR+  + 
Sbjct: 413 TRWKLINKALNLELSEPVETYSTSPHLYTDLDIPEDAQGQIIDP-EKAATEKKRRQHRHG 471

Query: 415 SQKSHIPLKESEKISKLQQDIQE 437
              SH             +D  +
Sbjct: 472 HDGSHHEKATRRHSRDASKDGDK 494


>gi|289428099|ref|ZP_06429802.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
           J165]
 gi|289158699|gb|EFD06900.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
           J165]
 gi|313822547|gb|EFS60261.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2]
 gi|314960461|gb|EFT04563.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2]
 gi|314989611|gb|EFT33702.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3]
 gi|315085333|gb|EFT57309.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3]
 gi|327327119|gb|EGE68898.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL096PA3]
 gi|327443743|gb|EGE90397.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2]
 gi|328754844|gb|EGF68460.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1]
          Length = 560

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 139/443 (31%), Positives = 217/443 (48%), Gaps = 9/443 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L 
Sbjct: 50  SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 109

Query: 62  ILEKGRARVR-------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L++ PTRELA QV+ +           V  + GG+ +E+
Sbjct: 110 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYES 169

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L+ G DV++ TPGR+LD   R  L +++  I+V+DEAD MLD+GF+P ++N+    
Sbjct: 170 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHERIVVLDEADEMLDLGFLPDVENLIGRT 229

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P +RQT+LFSATM   +                   + T  T+       Y  +      
Sbjct: 230 PASRQTMLFSATMPAPI-MALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIE 288

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +   + ++  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+ G
Sbjct: 289 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 348

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   D+
Sbjct: 349 EATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADV 408

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                I K +  ++       S+       +DI +    +  +P  + +T   RR+  + 
Sbjct: 409 TRWKLINKALNLELSEPVETYSTSPHLYTDLDIPEDAQGQIIDP-EKAATEKKRRQHRHG 467

Query: 415 SQKSHIPLKESEKISKLQQDIQE 437
              SH             +D  +
Sbjct: 468 HDGSHHEKATRRHSRDASKDGDK 490


>gi|300708304|ref|XP_002996334.1| hypothetical protein NCER_100594 [Nosema ceranae BRL01]
 gi|239605627|gb|EEQ82663.1| hypothetical protein NCER_100594 [Nosema ceranae BRL01]
          Length = 403

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 117/371 (31%), Positives = 190/371 (51%), Gaps = 10/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F D  +  ++V  + D   +  TPIQ KT+PL+L  HD+ GI+ TGTGKT SF++P+L
Sbjct: 1   MNFEDQKIDKQIVKILKDNNIIYMTPIQHKTVPLILNGHDILGISSTGTGKTFSFLVPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L            LI+ PTRELA Q+    + +      ++AL+ G    +  N+   
Sbjct: 61  HNLLNTNKSFYC---LIITPTRELALQIDKTVKLFKSLGVKSLALIGGEKIEDQLNQLKT 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+         H     L +N   +LV+DEAD+  +  FI  +  I   +   RQT
Sbjct: 118 HPHIVIGTP---GRLHKIGKNLKINRFRVLVLDEADKYFEDDFIEEMAFILENLRKKRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLF+AT+T+ L++ S   L+N K I+++T     +  E      +    K        L 
Sbjct: 175 LLFTATITNNLKQKSLEILKNFKEIDLSTNVKVEKLDEF----YFFVARKYKECFLYSLL 230

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF N K   + L   ++  G  V  ++G+ DQ++R++I+  F +    +++
Sbjct: 231 KNKQDLKIIIFVNMKITTLILSSLMKSFGIDVETLNGDQDQQARIEIIDGFIKNKYNVLI 290

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+ +RGLD+ DV  V N+D+P   ++Y+HR+GRT RAG+ G A TLV + D+     I
Sbjct: 291 TTDVGSRGLDVCDVDFVINYDLPQNNKDYVHRVGRTARAGKKGVALTLVTQYDVSIFQKI 350

Query: 361 EKLIEKKVDWL 371
           E  + +K++  
Sbjct: 351 EYFLNRKLNLF 361


>gi|281183435|gb|ADA53586.1| RE22480p [Drosophila melanogaster]
          Length = 403

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F + +L 
Sbjct: 31  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQ 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 91  QIDTSIRE---CQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 148 GCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F+++P  I V     T E I+  +V    +  K   L       
Sbjct: 208 LLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDL--YD 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 266 TLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  +D + +  IE
Sbjct: 326 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIE 385

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 386 QFYYTTIEEMPANIADL 402


>gi|270158633|ref|ZP_06187290.1| ATP-independent RNA helicase DbpA [Legionella longbeachae D-4968]
 gi|289166549|ref|YP_003456687.1| ATP-dependent RNA helicase [Legionella longbeachae NSW150]
 gi|269990658|gb|EEZ96912.1| ATP-independent RNA helicase DbpA [Legionella longbeachae D-4968]
 gi|288859722|emb|CBJ13695.1| putative ATP-dependent RNA helicase [Legionella longbeachae NSW150]
          Length = 470

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 138/375 (36%), Positives = 214/375 (57%), Gaps = 7/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ L L  +++ ++  A Y   TPIQ +++P++L+  D+   AQTG+GKTA+F L +L
Sbjct: 11  ISFSSLPLRQELIKSLASANYENMTPIQTQSLPIILKNQDIIAQAQTGSGKTAAFALSLL 70

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL-IGGIPFEAQNKKL 119
             L+     V+    L+L PTRELA QV+    +          +   GGIP + Q   L
Sbjct: 71  NNLKISFFAVQ---GLVLCPTRELAEQVSQAIRRLACLMPNVKIINLSGGIPMKPQLDSL 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA +++ TPGRIL H   G L ++ ++ LV+DEADRMLDMGF   +++I S+ P  RQ
Sbjct: 128 RHGAHLIVGTPGRILKHLKNGSLDLSQLKALVLDEADRMLDMGFFDDMKSIISVCPKQRQ 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +E++++S+ F+ NP+ I V +    AE I             +   L + L
Sbjct: 188 TLLFSATYPEEIKQISKQFMNNPQEIRVES---PAEEINIEEYFYEVTKQAQKFPLLKSL 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + +IFCN ++  V +   L ++GFS  A++G+++Q  R   +  F   +  ++
Sbjct: 245 LLHYRPVSTLIFCNTRQQTVEVTDLLIEEGFSAIALNGDMEQVDRDLAVLRFANHSCSIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++  V NFD+    E +IHRIGRTGRAG  G A ++    D + I A
Sbjct: 305 VATDVAARGLDIKELSTVINFDLAFDHEVHIHRIGRTGRAGCKGIALSITTPADAQRICA 364

Query: 360 IEKLIEKKVDWLNGD 374
           IE  +   ++W N +
Sbjct: 365 IEDNMPHPINWGNIN 379


>gi|1054723|emb|CAA31405.1| vasa [Drosophila melanogaster]
          Length = 661

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 118/368 (32%), Positives = 200/368 (54%), Gaps = 9/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++  V  +G+  PTPIQ  +IP++    D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 247 FTSADLRDIIIDNVNKSGFKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSK 306

Query: 63  LEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L +    +    P+ +I+ PTRELA Q+ +   K+     L + ++ GG  F  QN+ + 
Sbjct: 307 LLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECIT 366

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V+I TPGR+LD  +R  +   +   +V+DEADRMLDMGF   ++ I + V    + 
Sbjct: 367 RGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEH 426

Query: 181 L--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
              +FSAT  +E+Q+++  F     +  V+               T  + +K     + +
Sbjct: 427 QTLMFSATFPEEIQRMAGEF----LKNYVSVAIGIVGGACSDVKQTIYEVNKYAKRSKLI 482

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               +     I+F   K+    L   L ++ F   +IHG+  Q  R + L +FK G++++
Sbjct: 483 EILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKV 542

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHI 357
           ++A+ +A+RGLDI ++ HV N+D+P++ ++Y+HRIGRTG  G +G+A +    E D    
Sbjct: 543 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGCVGNNGRATSFFDPEKDRAIA 602

Query: 358 DAIEKLIE 365
             + K++E
Sbjct: 603 ADLVKILE 610


>gi|332250661|ref|XP_003274471.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Nomascus leucogenys]
          Length = 878

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 129/366 (35%), Positives = 195/366 (53%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 98  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 158 LKTHSAQTGA-RALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D +I TPGR++       L + ++E +V DEADR+ +MGF   +Q I + +P   QT+L
Sbjct: 217 PDTIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIITRLPGGHQTVL 276

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +   E ++  F     + +K   LL  L    
Sbjct: 277 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSF-FLVREDTKAAVLLHLLRNVV 335

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K +   L   L  Q  S   I+  +D  +R   L+ F  G    ++ +
Sbjct: 336 RPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSALIVT 395

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA ++I ++  +  
Sbjct: 396 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHL 455

Query: 363 LIEKKV 368
            + + +
Sbjct: 456 FLGRSL 461


>gi|293374539|ref|ZP_06620860.1| ATP-dependent RNA helicase DbpA family protein [Turicibacter
           sanguinis PC909]
 gi|325838631|ref|ZP_08166592.1| DEAD-box ATP-dependent RNA helicase CshB [Turicibacter sp. HGF1]
 gi|292646829|gb|EFF64818.1| ATP-dependent RNA helicase DbpA family protein [Turicibacter
           sanguinis PC909]
 gi|325490779|gb|EGC93084.1| DEAD-box ATP-dependent RNA helicase CshB [Turicibacter sp. HGF1]
          Length = 433

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 118/438 (26%), Positives = 207/438 (47%), Gaps = 12/438 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL + P +  A+ D  + + T IQ + IPL L+  D+ G +QTG+GKT +F++P+   
Sbjct: 5   FQDLNIKPYLKAAIEDLHFEELTQIQEQVIPLALEGKDIIGQSQTGSGKTHAFLIPIFES 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKLE 120
           L++   +V+     I  PTRELA Q+              + +   +GG   +   ++L 
Sbjct: 65  LKEDVQQVQAV---ITTPTRELAEQIYIVASHLASFSETPIKIGRYVGGTDKKQTIERLG 121

Query: 121 RGADVLICTPGRILDHFNRGKL-LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               ++I TPGRI D     +  L++  ++ V+DEAD  L+ GF+  I  I   +    Q
Sbjct: 122 VQPQIVIGTPGRIKDLAINERALLVHTAKMFVVDEADMTLETGFLTDIDQIAGTMGKDLQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++FSAT+   L+   + ++  P  I +       +T        Y    +    +   L
Sbjct: 182 MMVFSATIPQALKPFLKKYMTVPTHIHIQP---RQQTAVKINHILYPTKHRSRVNIVANL 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIF N K++   + ++L  QG  V  IHG++  R R +++   +    Q +
Sbjct: 239 LKTINPYLAIIFVNTKQHATEVSNALTSQGLQVGQIHGDLTPRQRRQMMQRIRNLDFQYI 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  V HV N+++P   E YIHR+GRT R    G A TL    D    + 
Sbjct: 299 VATDIAARGIDIEGVSHVINYELPQDLEFYIHRVGRTARGNYDGVAITLY---DSAEEEL 355

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +++L E+ + +   +L +          ++    +K N I + +    R+ K  +     
Sbjct: 356 LQELEERGIKFNYKELKNGELVTVNARNSRQKREKKENEIDKIAKAKVRKPKKVTPGYKK 415

Query: 420 IPLKESEKISKLQQDIQE 437
               E +K+ + ++  ++
Sbjct: 416 KMKFEMDKVKRQERRKRK 433


>gi|306813632|ref|ZP_07447813.1| ATP-dependent RNA helicase DbpA [Escherichia coli NC101]
 gi|222033147|emb|CAP75887.1| ATP-independent RNA helicase dbpA [Escherichia coli LF82]
 gi|305852906|gb|EFM53351.1| ATP-dependent RNA helicase DbpA [Escherichia coli NC101]
 gi|312945979|gb|ADR26806.1| ATP-dependent RNA helicase DbpA [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 457

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 208/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDVSLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+  ++C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQSVCDALNEVGHSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W     +S   PLE
Sbjct: 357 SDMLQIKLNWQTPPANSSIVPLE 379


>gi|2558533|emb|CAA73349.1| putative RNA helicase (DEAD box) [Danio rerio]
          Length = 688

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 139/432 (32%), Positives = 219/432 (50%), Gaps = 34/432 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL +   ++  +  + Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+
Sbjct: 209 SFHDLEMGEIIMGNINLSRYTRPTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLS 268

Query: 62  ILEKGRA-------------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT 102
            +                        R + P +L+L PTRELA Q+ D   K+    ++ 
Sbjct: 269 QIYTDGPGEALQAAKNSAQENGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRSHVR 328

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
             ++ GG     Q + LERG  +L+ TPGR++D   RGK+ ++    LV+DEADRMLDMG
Sbjct: 329 PCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMG 388

Query: 163 FIPYIQNITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
           F P I+ I            QT++FSAT   E+Q ++ +FL++   + V    ST+E I 
Sbjct: 389 FEPQIRRIVEQDTMPPKGLRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENIT 448

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
              V       +   L       +D++   ++F   KK    L   L ++G++  +IHG+
Sbjct: 449 QKVVWVEENDKRSFLLDLLNATGKDSL--TLVFVETKKGADALEDFLYREGYACTSIHGD 506

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
             QR R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR
Sbjct: 507 RSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 566

Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
            G  G A +    ++      +  ++ +    +   L SL          +H H   +  
Sbjct: 567 VGNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESL--------AYEHQHKSSSRG 618

Query: 399 IPQK-STGFDRR 409
             ++ S GF  R
Sbjct: 619 RSKRFSGGFGAR 630


>gi|302915819|ref|XP_003051720.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732659|gb|EEU46007.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 397

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 133/377 (35%), Positives = 210/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L  +++  V   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 25  SFDDMNLKSELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQ 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+  + LIL PTRELA Q+       G   N+     IGG       K L+ 
Sbjct: 85  KIDTN---VKACQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVREDMKALQD 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I  L+P + Q +
Sbjct: 142 GPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVV 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 202 LLSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A
Sbjct: 260 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIA 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  ED++ +  IE
Sbjct: 320 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTAEDVRMMREIE 379

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 380 QFYSTQIEEMPMNVADL 396


>gi|228997258|ref|ZP_04156882.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus mycoides
           Rock3-17]
 gi|229009233|ref|ZP_04166534.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus mycoides
           Rock1-4]
 gi|228752045|gb|EEM01771.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus mycoides
           Rock1-4]
 gi|228762532|gb|EEM11455.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus mycoides
           Rock3-17]
          Length = 389

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 104/367 (28%), Positives = 190/367 (51%), Gaps = 11/367 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P +  A   AG+ + T IQ + IP++L+  DV   + TGTGKT +++LP+L  +      
Sbjct: 7   PFLQQAWEKAGFKEFTEIQKQAIPMILEGQDVIAESPTGTGKTLAYLLPLLHKI---NPE 63

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           V+ P+ +IL PTREL  Q+ +  +K+    +++ A LIGG   + Q ++L++   V++ +
Sbjct: 64  VKQPQVVILAPTRELVMQIHEEVQKFTAGTDISGASLIGGADIKRQVERLKKHPKVIVGS 123

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGRIL+     KL M+ ++ +V DE D+++    +  + ++       RQ + FSATMT 
Sbjct: 124 PGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMEAVFDVIKSTMRDRQLVFFSATMTK 183

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
           + ++V+ +F   P+ + +      +         TY    ++                 +
Sbjct: 184 DAEEVARDFAVEPELVRIKRAEIKSLVE-----HTYIVCERREKNDYIRRVMHTGNVKAV 238

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
            F N    +  +   L+ +     A+H    ++ R   +  F++G I++++A+D+AARGL
Sbjct: 239 AFLNDPYRLDEIAEKLKYRKMKAAALHAEASKQEREATMRAFRQGKIEILLATDIAARGL 298

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE---K 366
           DI D+ HV + ++P+  + YIHR GRTGR G+ G   +LV  ++ + +    K +    K
Sbjct: 299 DIDDLTHVIHLELPDTLDQYIHRSGRTGRMGKEGTVVSLVTPQEERKLLQFAKKLGIQFK 358

Query: 367 KVDWLNG 373
           K +   G
Sbjct: 359 KQEMFKG 365


>gi|195440590|ref|XP_002068123.1| GK12420 [Drosophila willistoni]
 gi|194164208|gb|EDW79109.1| GK12420 [Drosophila willistoni]
          Length = 541

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 98/425 (23%), Positives = 174/425 (40%), Gaps = 25/425 (5%)

Query: 2   DFADLG----LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           +F +L     L P++   +   G+ +PTPIQ++ +P++L+   +   A TG+GKT +F+ 
Sbjct: 118 NFDELQQEFQLLPRLHQNLQSYGFQQPTPIQMQALPVMLRNRALMACAPTGSGKTLAFLT 177

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEA 114
           P++  L     +    R L+L PTRELA Q+     +  +   L    +           
Sbjct: 178 PIINGLRS--HQTSGIRALVLAPTRELAQQIYRECSELTRETGLRTHFISKVSEAKQQHG 235

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
              K +    +      R L       L ++ +E  V+DEADR+++ G   + + +  + 
Sbjct: 236 PECKQKYDILISTPNRVRFLLQQEPPLLDLSAVEWFVLDEADRLMEEGKNNFKEQLDDIY 295

Query: 175 PFTRQ--TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                    +   + T  +             + +      + T        +       
Sbjct: 296 SACSHSGKRVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATDTVQQELLFVGSESGK 355

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            +  + L  +      +IF   K     L   L   G +V  IH    Q  R   +  F+
Sbjct: 356 LVAIRNLVKEGLHPPVLIFVQSKDRAKQLFEELLYDGINVDVIHAERTQHQRDNCVRAFR 415

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG I +++ ++L  RG+D   V  V N+D P    +YIHRIGRTGRAGR G+A T   +E
Sbjct: 416 EGNIWVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQE 475

Query: 353 DIKHIDAIEKLIE-------------KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           D  ++ +I ++I+             KKV      + +   PL++ +I+      +  P 
Sbjct: 476 DTANLRSIAQIIKNSGGTVPEYMLQMKKVSKSEAKMRA-KKPLDREEISTKIKPVELKPE 534

Query: 400 PQKST 404
            +   
Sbjct: 535 KEHKK 539


>gi|319744243|gb|EFV96608.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           agalactiae ATCC 13813]
          Length = 419

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 124/428 (28%), Positives = 198/428 (46%), Gaps = 12/428 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D    P +  A+ +  +V PT +Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDFNFKPYIQSALDELKFVDPTDVQAKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNK 117
             L++    V++    I  P+RELA Q+    ++  ++    V ++             K
Sbjct: 61  EKLDESSDDVQVV---ITAPSRELATQIYQATKQIAEHSEQEVRVVNYVGGTDKLRQIEK 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++     V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LKVSQPHIVIGTPGRIYDLVKSGDLAIHKAHTFVVDEADMTLDMGFLDTVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPLMEKIKTATVIADTI---DNWLLSTKGRDKNAQIL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L         +IF N K+    L   L   G  V  IHG I  R R +I++  K    +
Sbjct: 235 ELSKLMQPYLAMIFVNTKERADELHSYLSSNGLKVAKIHGGIAPRERKRIMNQVKNLEFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             +EKL    ++++   + +           ++N  +    +  +  G  ++K+   ++ 
Sbjct: 355 RELEKL---GINFIPKVIKNGEFQDTYDRDRRNNREKSYQKLDTEMIGLVKKKRKNKTRL 411

Query: 418 SHIPLKES 425
                 ES
Sbjct: 412 QEKNSMES 419


>gi|255972909|ref|ZP_05423495.1| helicase [Enterococcus faecalis T1]
 gi|256618957|ref|ZP_05475803.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256762384|ref|ZP_05502964.1| helicase [Enterococcus faecalis T3]
 gi|256958868|ref|ZP_05563039.1| helicase [Enterococcus faecalis DS5]
 gi|256962038|ref|ZP_05566209.1| helicase [Enterococcus faecalis Merz96]
 gi|256965236|ref|ZP_05569407.1| helicase [Enterococcus faecalis HIP11704]
 gi|257078900|ref|ZP_05573261.1| helicase [Enterococcus faecalis JH1]
 gi|257085363|ref|ZP_05579724.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|257086858|ref|ZP_05581219.1| helicase [Enterococcus faecalis D6]
 gi|257089771|ref|ZP_05584132.1| helicase [Enterococcus faecalis CH188]
 gi|257415987|ref|ZP_05592981.1| helicase [Enterococcus faecalis AR01/DG]
 gi|257422733|ref|ZP_05599723.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294779570|ref|ZP_06744964.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300861181|ref|ZP_07107268.1| DEAD-box ATP-dependent RNA helicase CshB [Enterococcus faecalis
           TUSoD Ef11]
 gi|255963927|gb|EET96403.1| helicase [Enterococcus faecalis T1]
 gi|256598484|gb|EEU17660.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256683635|gb|EEU23330.1| helicase [Enterococcus faecalis T3]
 gi|256949364|gb|EEU65996.1| helicase [Enterococcus faecalis DS5]
 gi|256952534|gb|EEU69166.1| helicase [Enterococcus faecalis Merz96]
 gi|256955732|gb|EEU72364.1| helicase [Enterococcus faecalis HIP11704]
 gi|256986930|gb|EEU74232.1| helicase [Enterococcus faecalis JH1]
 gi|256993393|gb|EEU80695.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|256994888|gb|EEU82190.1| helicase [Enterococcus faecalis D6]
 gi|256998583|gb|EEU85103.1| helicase [Enterococcus faecalis CH188]
 gi|257157815|gb|EEU87775.1| helicase [Enterococcus faecalis ARO1/DG]
 gi|257164557|gb|EEU94517.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294453360|gb|EFG21768.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300850220|gb|EFK77970.1| DEAD-box ATP-dependent RNA helicase CshB [Enterococcus faecalis
           TUSoD Ef11]
 gi|323480612|gb|ADX80051.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis 62]
          Length = 449

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 123/400 (30%), Positives = 199/400 (49%), Gaps = 13/400 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P +  A+ + G+ +PT +Q K IP++ +   V G +QTG+GKT +F+LP++ 
Sbjct: 3   SFKQFQFQPFINEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLMD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNKK 118
            ++     V++    I  P+RELA Q+    ++  +     + +             NK 
Sbjct: 63  KVKPTIDEVQIV---ITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKL 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +   V+I TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I   +P   
Sbjct: 120 KHQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+   + +L+NP    +   +  +ETI        +   K    +   
Sbjct: 180 QMLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETI---DNWLISTKGKNSNQIIYQ 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +       I+F N K+ V  +   L+ QG  V  IHG+I  R R +++   +    Q 
Sbjct: 237 LLTIGHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQY 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N +VP+  + +IHR+GRTGR G +G A TL +  D + I 
Sbjct: 297 VVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEAIT 356

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
            IE+L    V +   ++ +    +E  D  +     K+  
Sbjct: 357 QIEQL---GVSFKPKEIKN-GEIVETYDRNRRTKREKSRE 392


>gi|229550132|ref|ZP_04438857.1| ATP-dependent RNA helicase [Enterococcus faecalis ATCC 29200]
 gi|293383060|ref|ZP_06628978.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|293387787|ref|ZP_06632331.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|307271133|ref|ZP_07552416.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|307273339|ref|ZP_07554584.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|307277485|ref|ZP_07558577.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|307288127|ref|ZP_07568137.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|312900642|ref|ZP_07759939.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|312904121|ref|ZP_07763289.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|312907351|ref|ZP_07766342.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|312909967|ref|ZP_07768815.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|312952381|ref|ZP_07771256.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|229304718|gb|EEN70714.1| ATP-dependent RNA helicase [Enterococcus faecalis ATCC 29200]
 gi|291079725|gb|EFE17089.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|291082857|gb|EFE19820.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|306500863|gb|EFM70181.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|306505750|gb|EFM74928.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|306509866|gb|EFM78891.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|306512631|gb|EFM81280.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|310626379|gb|EFQ09662.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|310629765|gb|EFQ13048.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|310632597|gb|EFQ15880.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|311289925|gb|EFQ68481.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|311292123|gb|EFQ70679.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|315027381|gb|EFT39313.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
 gi|315033779|gb|EFT45711.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
 gi|315036865|gb|EFT48797.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
 gi|315145689|gb|EFT89705.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
 gi|315147874|gb|EFT91890.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
 gi|315150649|gb|EFT94665.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
 gi|315153344|gb|EFT97360.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
 gi|315155879|gb|EFT99895.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
 gi|315157954|gb|EFU01971.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
 gi|315160224|gb|EFU04241.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
 gi|315164257|gb|EFU08274.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
 gi|315166649|gb|EFU10666.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
 gi|315170067|gb|EFU14084.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
 gi|315174457|gb|EFU18474.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
 gi|315578466|gb|EFU90657.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
 gi|327535018|gb|AEA93852.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           faecalis OG1RF]
          Length = 452

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 123/400 (30%), Positives = 199/400 (49%), Gaps = 13/400 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P +  A+ + G+ +PT +Q K IP++ +   V G +QTG+GKT +F+LP++ 
Sbjct: 6   SFKQFQFQPFINEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLMD 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNKK 118
            ++     V++    I  P+RELA Q+    ++  +     + +             NK 
Sbjct: 66  KVKPTIDEVQIV---ITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKL 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +   V+I TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I   +P   
Sbjct: 123 KHQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+   + +L+NP    +   +  +ETI        +   K    +   
Sbjct: 183 QMLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETI---DNWLISTKGKNSNQIIYQ 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +       I+F N K+ V  +   L+ QG  V  IHG+I  R R +++   +    Q 
Sbjct: 240 LLTIGHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQY 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N +VP+  + +IHR+GRTGR G +G A TL +  D + I 
Sbjct: 300 VVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEAIT 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
            IE+L    V +   ++ +    +E  D  +     K+  
Sbjct: 360 QIEQL---GVSFKPKEIKN-GEIVETYDRNRRTKREKSRE 395


>gi|323453625|gb|EGB09496.1| hypothetical protein AURANDRAFT_10388 [Aureococcus anophagefferens]
          Length = 589

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 132/404 (32%), Positives = 212/404 (52%), Gaps = 30/404 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  L   ++ A+ DAGY +P+PIQ + IP+ L+  D+ G+A+TG+GKTA+F +PM+  
Sbjct: 178 WGEADLGEPLLMAIRDAGYKEPSPIQRQAIPVGLELRDIIGVAETGSGKTAAFCIPMIRY 237

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +               P  L++ PTRELA Q+A   +K   + ++ V  ++GG+  E Q 
Sbjct: 238 ISKLPAARIASLADDGPLALVMAPTRELATQIAGECKKLTAHMDMNVTTVVGGMSIEDQA 297

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV-- 174
             L  G ++++ TPGRI D  +   L++N    +V+DEADRM+DMGF P + +I   +  
Sbjct: 298 FVLREGVEIIVGTPGRIQDCLDTQYLVLNQANYVVLDEADRMIDMGFEPQVHSILEEMGG 357

Query: 175 ---------------------PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
                                   R T +FSATM   ++K+++ FL++P  + +    S 
Sbjct: 358 LLLSEDDIEMEQQRLAVQRGEACYRITAMFSATMPSAVEKLAKKFLRHPAIVCIGDEDSG 417

Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
                   V   A+ +K    +  +L+ +      ++FCN+KK    L   L   G    
Sbjct: 418 KNKRIAQHVLYIAEAAK-KNAVVDILRKKKAQDKYLVFCNEKKGCDALAKVLSTAGLRSS 476

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
            +HG   Q  R   L+ +K G++ ++VA+D+A RGLDIPDV HV N+D+P + ENY HRI
Sbjct: 477 VLHGGKTQEHRDATLAAYKAGSVTVLVATDVAGRGLDIPDVAHVVNYDMPLKIENYSHRI 536

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
           GRTGRAG+ G A TL+   D   +  + + +E+    +   L  
Sbjct: 537 GRTGRAGKDGVATTLLTDSDEAMMYDLRQYLEQTDAQIPERLEK 580


>gi|311106059|ref|YP_003978912.1| ATP-independent RNA helicase DbpA [Achromobacter xylosoxidans A8]
 gi|310760748|gb|ADP16197.1| ATP-independent RNA helicase DbpA [Achromobacter xylosoxidans A8]
          Length = 462

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 133/384 (34%), Positives = 203/384 (52%), Gaps = 10/384 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L P ++  +   G+ + TPIQ +++PL+L+  D+   A+TG+GKTA+F L +L 
Sbjct: 5   SFTSLPLLPALLDNLKSLGFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-E 120
            L+  R     P+ L++ PTRELA QVA    +  +       L + G        +   
Sbjct: 65  KLDPTR---LTPQALLVCPTRELADQVAQELRRLARQIANVKILTLCGGAAARPQAESLA 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  +++ TPGRI DH  RG L ++ +  LV+DEADRM+DMGF   I  I S  P  RQT
Sbjct: 122 RGTHLVVGTPGRIQDHLERGSLDLSGLNTLVLDEADRMVDMGFYDDIVAIASHCPTKRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D ++K+S  F     R                    Y    K        L 
Sbjct: 182 LLFSATYPDNIRKLSARF----LRNPAEVKVEAQHDASRIEQIFYEIDDKDRLDAVTRLL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +    ++ + FCN K    +L   L+ +G S  A++G+++QR R +IL  F   +  ++V
Sbjct: 238 AHFRPESTLAFCNTKIRSHDLVERLQAEGISAQALNGDLEQRERDEILIQFANRSCAVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI ++G V N DV    E ++HRIGR+GR  + G A +L + E+++  + I
Sbjct: 298 ATDVAARGLDIQNLGAVINVDVTKDTEVHVHRIGRSGRGEQKGLALSLCSPEEMRWANLI 357

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E+     + W  GD+ +L P  ++
Sbjct: 358 EQYQGAPLVW--GDIKTLRPKADR 379


>gi|156844737|ref|XP_001645430.1| hypothetical protein Kpol_534p53 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380651|sp|A7TJM9|DRS1_VANPO RecName: Full=ATP-dependent RNA helicase DRS1
 gi|156116092|gb|EDO17572.1| hypothetical protein Kpol_534p53 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 752

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 149/463 (32%), Positives = 234/463 (50%), Gaps = 25/463 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L LS  V+  + D GY KP+PIQ  TIP+ L   D+   A TG+GKTA+F++P++ 
Sbjct: 232 TFNSLTLSRPVLKGLSDLGYTKPSPIQSATIPIGLSGKDIIAGAVTGSGKTAAFMIPIIE 291

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            L    A+V   R ++L PTRELA Q+AD  +K GK    LT  L +GG+    Q ++L+
Sbjct: 292 RLLYKPAKVASTRVIVLTPTRELAIQIADVGKKIGKYVSGLTFGLAVGGLNLRQQEQELK 351

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNI-EILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D++I TPGR +DH         +  E+LV+DEADRML+ GF   +  I +L+P  RQ
Sbjct: 352 TRPDIVIATPGRFIDHVRNSSSFNVDSVEVLVMDEADRMLEEGFQEELNEILTLLPSKRQ 411

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSS--TAETIEHCFVATYAQYSKKCALLQQ 237
           TLLFSATM   ++ +    L+ P RI +N P       T E   +               
Sbjct: 412 TLLFSATMNSRIKSLISLSLRKPVRIMINPPKQAAARLTQEFVRIRKRDHLKPALLFYLI 471

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                   K  ++F  +K+    L   L   G  V  +HG++ Q  R++ ++NFK   + 
Sbjct: 472 RKLDGTGQKRIVVFVARKEMAHKLRIILGLLGMKVGELHGSLTQEQRLQSVNNFKSLEVP 531

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIK 355
           +++ +DLA+RGLDIP +  V NFD+P   E Y+HR+GRT RAGR G++ T V  + +D  
Sbjct: 532 VLICTDLASRGLDIPKIEVVINFDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 591

Query: 356 HIDAIEKLIEK---------------KVDWLNGDLSSLNPPLEKI--DIAQHNHARKNNP 398
            + +  K +E+               +++  N  + S    ++ I  +  Q     +   
Sbjct: 592 IVRSAIKSVEESSSKNKAVSRNVEWTQIEETNKLVESFGETIDDILVEEKQEKEILRAEM 651

Query: 399 IPQKSTGFDRRKKNYSS--QKSHIPLKESEKISKLQQDIQEND 439
             +K     + KK   S  +++    +  +K +K+   +Q+N 
Sbjct: 652 QLRKGENMIKHKKEIQSRPKRTWFQSEAEKKNAKILDTLQKNK 694


>gi|254581554|ref|XP_002496762.1| ZYRO0D07546p [Zygosaccharomyces rouxii]
 gi|238939654|emb|CAR27829.1| ZYRO0D07546p [Zygosaccharomyces rouxii]
          Length = 494

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 111/391 (28%), Positives = 191/391 (48%), Gaps = 8/391 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS   + A+   G+   T +Q +TIP +L   DV G A+TG+GKT +F++P + 
Sbjct: 31  TFGELELSQPTLKAIDKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 90

Query: 62  ILEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L   + + R    +I + PTRELA Q+     +  + ++ T  ++IGG     +  KL 
Sbjct: 91  RLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLV 150

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G ++LI TPGR +    N    +  N++ L+IDEADR+L++GF   ++ I  ++P   +
Sbjct: 151 KGVNLLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEEEMRQIIKILPNEDR 210

Query: 180 TLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             + FSAT T +++ ++   L+               T+E          S K  LL   
Sbjct: 211 QSMLFSATQTTKVEDLARISLRAGPLFINVVSEKDNSTVEGLEQGYVVCDSDKRFLLLFS 270

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +   +V      L      V  +HG   Q+ R      F      +
Sbjct: 271 FLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGI 330

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHI 357
           +V++D+AARGLDIP V  +  FD P+   +YIHR+GRT R  +  GK+   +   ++  +
Sbjct: 331 LVSTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGAKGKGKSLMFLTPNELGFL 390

Query: 358 DAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
             + K  +  ++        ++++   LEK+
Sbjct: 391 RYL-KAAKVPLNEYEFPTNKIANVQSQLEKL 420


>gi|170086121|ref|XP_001874284.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651836|gb|EDR16076.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 517

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 106/347 (30%), Positives = 182/347 (52%), Gaps = 3/347 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DLGLSP+ +  + D G+   T +Q K+IP++L   D+ G A+TG+GKT +F++P +
Sbjct: 1   MPFSDLGLSPQTLQGLSDMGFSTMTSVQQKSIPVLLAGKDLLGAARTGSGKTLAFLIPAV 60

Query: 61  TILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L + + +       +I+ PTRELA Q+    +    +++ T  ++IGG    A+ ++L
Sbjct: 61  ELLHRLKFKPMNGTGIIIITPTRELALQIFGVAKDLMAHHSQTFGIVIGGTSVRAERERL 120

Query: 120 ERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +G ++L+ TPGR +         +  N++ LVIDEADR+L++GF   +++I S++P   
Sbjct: 121 IKGVNLLVATPGRLLDHLREAKGFVFRNLKGLVIDEADRILEVGFEEEMKSIISILPKED 180

Query: 179 QTLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +  + FSAT T ++  ++   L+               T+           S +  LL  
Sbjct: 181 RQTMLFSATQTTKVTDLARISLRPGPIHIDVDKEEATSTVSTLSQGYVVCPSDRRFLLLY 240

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  I+F +   +V      +      V  +HG   Q+ R      F      
Sbjct: 241 TFLKKNLKKKVIVFFSSCNSVKYHAELMNYIDVPVLDLHGKQKQQKRTNTFFEFINAETG 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
           ++ ++++AARGLDIP V  +  FD P+   +YIHR+GRT RAG+ GK
Sbjct: 301 ILFSTNVAARGLDIPRVDWIVQFDPPDDPRDYIHRVGRTARAGKVGK 347


>gi|294632189|ref|ZP_06710749.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
 gi|292835522|gb|EFF93871.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
          Length = 473

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 140/460 (30%), Positives = 219/460 (47%), Gaps = 14/460 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA L L  +V+  + D G  +P PIQ  T+P  L+  DV G  +TG+GKT +F LP+L
Sbjct: 28  VSFAGLELPVEVLRTLSDLGVREPFPIQAATLPDALKGRDVLGRGRTGSGKTLAFGLPLL 87

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T     RA  + P  LIL PTRELA QVA     Y +   L +A ++GG     Q   L 
Sbjct: 88  TRTAGRRAEPKQPLALILVPTRELAQQVAQALAPYAEALRLRMATVVGGTSIGRQVAALR 147

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA+V++ TPGR+ D   R    +  + I V+DEAD+M D+GF+P + ++   V    Q 
Sbjct: 148 QGAEVVVATPGRLHDLIERNACRLGRVGITVLDEADQMCDLGFLPQVADVLDQVHPDGQR 207

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+  ++ ++   +L +P    V+  + T  T+EH  +  +            + +
Sbjct: 208 MLFSATLDRDVDQLVRRYLHDPVVHSVDPSTGTVTTMEHHVLVVHDPDR-----YAVITE 262

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F + K  V  L   L   G    A+H    Q  R + L+ FK G I ++V
Sbjct: 263 IAARDGRVLLFLDTKHAVDQLTRHLRASGVHAGALHSGKSQPQRTRTLAQFKNGQITVLV 322

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGL + D+  V N D P   ++Y+HR GRT RAG  G   TLV+    +    +
Sbjct: 323 ATDVAARGLHVDDLDLVVNVDPPTDPKDYVHRAGRTARAGESGSVVTLVSAGRRRETSRM 382

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
             +    ++     + S    L +I       AR  + IP        R KN ++     
Sbjct: 383 --MAGAGIEPTVTKVRSGEAELSRI-----TGARTPSGIPLDGGPAVPRPKNTNA--PFR 433

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
            L  S+  S+          ++        A ++ +NR +
Sbjct: 434 GLGTSKDTSRGAGGKSRKAGEARKLAEARKAALVRRNRAR 473


>gi|194222171|ref|XP_001916624.1| PREDICTED: similar to DEAD box polypeptide 18 (predicted) [Equus
           caballus]
          Length = 623

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 120/392 (30%), Positives = 202/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADL--GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L   ++   + A+ + G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 131 SFASLTSLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPA 190

Query: 60  LTILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K +   R    + IL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 191 VELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHIHTYGLIMGGSNRSAEAQK 250

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 251 LANGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTR 310

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T++          S+K  LL  
Sbjct: 311 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLF 370

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +  K+V      L      V AIHG   Q  R      F      
Sbjct: 371 TFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSG 430

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
           +++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 431 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELG 489

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + ++    +S +   LEK+
Sbjct: 490 FLRYLKQSKVPLSEFEFSWSKISDIQSQLEKL 521


>gi|313812629|gb|EFS50343.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
          Length = 560

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 139/443 (31%), Positives = 218/443 (49%), Gaps = 9/443 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L 
Sbjct: 50  SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 109

Query: 62  ILEKGRARVR-------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L++ PTRELA QV+ +           V  + GG+ +E+
Sbjct: 110 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYES 169

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L+ G DV++ TPGR+LD   R  L ++++ I+V+DEAD MLD+GF+P ++N+    
Sbjct: 170 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 229

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P +RQT+LFSATM   +                   + T  T+       Y  +      
Sbjct: 230 PASRQTMLFSATMPAPI-MALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIE 288

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +   + ++  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+ G
Sbjct: 289 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 348

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   D+
Sbjct: 349 EATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADV 408

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                I K +  ++       S+       +DI +    +  +P  + +T   RR+  + 
Sbjct: 409 TRWKLINKALNLELSEPVETYSTSPHLYTDLDIPEDAQGQIIDP-EKAATEKKRRQHRHG 467

Query: 415 SQKSHIPLKESEKISKLQQDIQE 437
              SH             +D  +
Sbjct: 468 HDGSHHEKATRRHSRDASKDGDK 490


>gi|313801696|gb|EFS42936.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
 gi|313809686|gb|EFS47420.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
 gi|313827484|gb|EFS65198.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
 gi|313830023|gb|EFS67737.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
 gi|313838410|gb|EFS76124.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
 gi|314918026|gb|EFS81857.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
 gi|314920401|gb|EFS84232.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
 gi|314956494|gb|EFT00782.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
 gi|314957338|gb|EFT01441.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
 gi|314967660|gb|EFT11759.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
 gi|314975747|gb|EFT19842.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
 gi|315095792|gb|EFT67768.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1]
 gi|315098853|gb|EFT70829.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
 gi|327442653|gb|EGE89307.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
 gi|327452701|gb|EGE99355.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
 gi|327453458|gb|EGF00113.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
 gi|328761493|gb|EGF75017.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL099PA1]
          Length = 564

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 139/443 (31%), Positives = 218/443 (49%), Gaps = 9/443 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L 
Sbjct: 54  SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 113

Query: 62  ILEKGRARVR-------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L++ PTRELA QV+ +           V  + GG+ +E+
Sbjct: 114 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYES 173

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L+ G DV++ TPGR+LD   R  L ++++ I+V+DEAD MLD+GF+P ++N+    
Sbjct: 174 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 233

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P +RQT+LFSATM   +                   + T  T+       Y  +      
Sbjct: 234 PASRQTMLFSATMPAPI-MALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIE 292

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +   + ++  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+ G
Sbjct: 293 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 352

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   D+
Sbjct: 353 EATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADV 412

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                I K +  ++       S+       +DI +    +  +P  + +T   RR+  + 
Sbjct: 413 TRWKLINKALNLELSEPVETYSTSPHLYTDLDIPEDAQGQIIDP-EKAATEKKRRQHRHG 471

Query: 415 SQKSHIPLKESEKISKLQQDIQE 437
              SH             +D  +
Sbjct: 472 HDGSHHEKATRRHSRDASKDGDK 494


>gi|289425167|ref|ZP_06426944.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
           SK187]
 gi|295130858|ref|YP_003581521.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
 gi|289154145|gb|EFD02833.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
           SK187]
 gi|291375854|gb|ADD99708.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
 gi|313792354|gb|EFS40453.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
 gi|313816221|gb|EFS53935.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
 gi|313832974|gb|EFS70688.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
 gi|314914858|gb|EFS78689.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
 gi|314962474|gb|EFT06574.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
 gi|314983655|gb|EFT27747.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
 gi|315077690|gb|EFT49741.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
 gi|315080851|gb|EFT52827.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
 gi|315109398|gb|EFT81374.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
 gi|327329827|gb|EGE71582.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL096PA2]
 gi|327452200|gb|EGE98854.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
          Length = 560

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 139/443 (31%), Positives = 218/443 (49%), Gaps = 9/443 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L 
Sbjct: 50  SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 109

Query: 62  ILEKGRARVR-------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L++ PTRELA QV+ +           V  + GG+ +E+
Sbjct: 110 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYES 169

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L+ G DV++ TPGR+LD   R  L ++++ I+V+DEAD MLD+GF+P ++N+    
Sbjct: 170 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 229

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P +RQT+LFSATM   +                   + T  T+       Y  +      
Sbjct: 230 PASRQTMLFSATMPAPI-MALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIE 288

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +   + ++  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+ G
Sbjct: 289 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 348

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   D+
Sbjct: 349 EATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADV 408

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                I K +  ++       S+       +DI +    +  +P  + +T   RR+  + 
Sbjct: 409 TRWKLINKALNLELSEPVETYSTSPHLYTDLDIPEDAQGQIIDP-EKAATEKKRRQHRHG 467

Query: 415 SQKSHIPLKESEKISKLQQDIQE 437
              SH             +D  +
Sbjct: 468 HDGSHHEKATRRHSRDASKDGDK 490


>gi|170099249|ref|XP_001880843.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644368|gb|EDR08618.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 461

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 108/402 (26%), Positives = 179/402 (44%), Gaps = 22/402 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +LGL   ++  + D G+ KP+ IQ + +PL+L     ++ G +Q+GTGKTA+FVL M
Sbjct: 65  TFEELGLQADLLKGIYDMGFSKPSKIQERALPLLLSNPPTNMIGQSQSGTGKTAAFVLTM 124

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++    +   P+ L L P+RELA Q+       GK  N+     I            
Sbjct: 125 LSRVDFSLNK---PQALCLAPSRELARQIMSVVVAMGKFTNVQTEYAIKDNLPRNATNVT 181

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +       T   ++         +    +   D       +G                Q
Sbjct: 182 AQIIVGTPGTMTDLMRRKVIDVTHIKVFVLDEADNMLDQDGLGDQTLRVKNLLPRGSPVQ 241

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT  D ++  + NF  N  +IE+     + E I   ++    +  K   L+    
Sbjct: 242 IILFSATFPDHVRSFAANFAPNANKIELQKEELSVEGIRQFYMDCRNEEHKYDILVSL-- 299

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S  T+   IIFC  +     +   +  +G  V ++HG  D   R  I+ +F+EG  +++
Sbjct: 300 YSLLTIGQSIIFCQHRHTADRISQRMTAEGHKVASLHGAKDAAERDAIIDHFREGRDKVL 359

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------------NRAENYIHRIGRTGRAGRHGKAFT 347
           + +++ ARG+DI  V  V N+D+P               E YIHRIGRTGR GR G +  
Sbjct: 360 ITTNVIARGIDILQVNMVVNYDLPLMNEREKGGDGIPDIETYIHRIGRTGRFGRKGISIN 419

Query: 348 LV-AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
            V  K+    ++ IEK + +K+  +  + + L+   EK+  A
Sbjct: 420 FVHDKKTWLQMEQIEKALGRKI--IRIETNDLDEMEEKMKKA 459


>gi|12860207|dbj|BAB31877.1| unnamed protein product [Mus musculus]
          Length = 660

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 121/392 (30%), Positives = 201/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP- 58
            FA L   ++   + A+ + G+ + T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 168 SFASLSNLVNENTLKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPV 227

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  I++           LIL PTRELA Q  D  ++   ++  T  L++GG    A+ +K
Sbjct: 228 IELIVKLKFMPRNGTGVLILSPTRELAMQTFDVLKELMTHHVHTYGLIMGGSNRSAEVQK 287

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 288 LLNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPAR 347

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T++          S+K  LL  
Sbjct: 348 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLF 407

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 408 TFLKKNRKKKVMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSG 467

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
           +++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 468 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELG 526

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + D+    +S +   LEK+
Sbjct: 527 FLRYLKQSKVPLNQFDFSWSKVSDIQSQLEKL 558


>gi|261331698|emb|CBH14692.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 738

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 118/393 (30%), Positives = 195/393 (49%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL + P +   +   GY +PTP+Q   IP+ L  +D+   AQTG+GKTA+F++P++ 
Sbjct: 293 SFEDLFVEPALALNIAKCGYKEPTPVQRYGIPVCLNGNDLMACAQTGSGKTAAFLVPVVH 352

Query: 62  ILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + K      + R+  P  +I+ PTRELA Q+ D   K     ++   ++ GG P+  + 
Sbjct: 353 YILKNGVSPAKDRISHPIAVIMAPTRELALQIYDEVRKLTFRTDIFYDVVYGGTPYPTR- 411

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI------QNI 170
                  D+L+  PGR+ D F+R  +  + ++ L++DEADRML+MGF   I      +  
Sbjct: 412 ----FENDILVACPGRLKDIFDRNIVSFSCVKFLILDEADRMLEMGFEEQIEYLVASRYS 467

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT    +  +++ +L+    +       +        +    +  K
Sbjct: 468 DMPSSEERQTLMFSATFPQRILNLAKRYLRPKYYLLTVGRVGSTTKNITQKLERVPEAEK 527

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K  L   ++  Q      +IF   K++   L  +L+  G     IHG+  Q  R   L +
Sbjct: 528 KDKLFD-IIYKQKQTDLVLIFVETKRSAEQLHSALKSSGIPSTTIHGDRRQSDREIALKD 586

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+A+RGLDIP+V HV  +D+P   ++Y HRIGRTGRAG  G A +   
Sbjct: 587 FKSGITPILVATDVASRGLDIPNVAHVIQYDLPKEMDDYTHRIGRTGRAGNKGVATSFYD 646

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
           + +      +   + +    +   L +    +E
Sbjct: 647 RNNRNLAVELYHYLREHEQEVPMWLENEKDAVE 679


>gi|257082654|ref|ZP_05577015.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
 gi|256990684|gb|EEU77986.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
          Length = 449

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 123/400 (30%), Positives = 199/400 (49%), Gaps = 13/400 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P +  A+ + G+ +PT +Q K IP++ +   V G +QTG+GKT +F+LP++ 
Sbjct: 3   SFKQFQFQPFINEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLMD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNKK 118
            ++     V++    I  P+RELA Q+    ++  +     + +             NK 
Sbjct: 63  KVKPTIDEVQIV---ITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKL 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +   V+I TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I   +P   
Sbjct: 120 KHQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+   + +L+NP    +   +  +ETI        +   K    +   
Sbjct: 180 QMLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETI---DNWLISTKGKNSNQIIYQ 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +       I+F N K+ V  +   L+ QG  V  IHG+I  R R +++   +    Q 
Sbjct: 237 LLTIGHPYLAIVFANTKQTVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQY 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N +VP+  + +IHR+GRTGR G +G A TL +  D + I 
Sbjct: 297 VVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEAIT 356

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
            IE+L    V +   ++ +    +E  D  +     K+  
Sbjct: 357 QIEQL---GVSFKPKEIKN-GEIVETYDRNRRTKREKSRE 392


>gi|123449042|ref|XP_001313244.1| ATP-dependent RNA helicase p47 [Trichomonas vaginalis G3]
 gi|121895120|gb|EAY00315.1| ATP-dependent RNA helicase p47, putative [Trichomonas vaginalis G3]
          Length = 420

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 98/376 (26%), Positives = 170/376 (45%), Gaps = 4/376 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L P+++ A+ D G+  P+ +Q + IP  L   D+    ++G GKTA FV+ +L  
Sbjct: 40  FREFLLKPELMHAISDCGFEHPSQVQQECIPHALLGTDIICQGKSGMGKTAVFVISVLQQ 99

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     V               A     F K+    +  V              K ++ 
Sbjct: 100 LDPVPGEVSCLTIAPTRELAFQIATEFQRFTKFMPGVDSVVFYGGIPKATNIATLKEKKP 159

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR-MLDMGFIPYIQNITSLVPFTRQTL 181
             V+      +     +  L ++ ++  VIDEAD+          +  I + +P  +Q L
Sbjct: 160 CIVVATPGRCLDLIKEKDVLDVSKVKFFVIDEADKVFEKQDMKDTVDKIYNRLPKDKQVL 219

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM D ++++  +F  N   + V+            +    A+  K   L++  +  
Sbjct: 220 LFSATMPDSMKEICRSFTHNATEVYVDDDKKLTLHGLQQYYVKLAENEKNRKLVE--ILE 277

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  +IF ++K+   NL   L + G    AI GN+ Q  R++  S FK+   +++VA
Sbjct: 278 NYKFNQVVIFLDKKERAKNLTQLLNECGHPTIAISGNMTQEDRIRAFSEFKQFKHRILVA 337

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL-VAKEDIKHIDAI 360
           +DL ARG+D+  V  V N+D+P+  + Y+HR+GR GR G  G A +  V +ED+     I
Sbjct: 338 TDLIARGIDVERVNIVINYDMPDSTDTYLHRVGRAGRFGTKGLAISFVVTEEDVAMQKKI 397

Query: 361 EKLIEKKVDWLNGDLS 376
           +   E K++ L   ++
Sbjct: 398 QDRFELKIEQLPASIA 413


>gi|71745728|ref|XP_827494.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70831659|gb|EAN77164.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
          Length = 735

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 118/393 (30%), Positives = 195/393 (49%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL + P +   +   GY +PTP+Q   IP+ L  +D+   AQTG+GKTA+F++P++ 
Sbjct: 290 SFEDLFVEPALALNIAKCGYKEPTPVQRYGIPVCLNGNDLMACAQTGSGKTAAFLVPVVH 349

Query: 62  ILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + K      + R+  P  +I+ PTRELA Q+ D   K     ++   ++ GG P+  + 
Sbjct: 350 YILKNGVSPAKDRISHPIAVIMAPTRELALQIYDEVRKLTFRTDIFYDVVYGGTPYPTR- 408

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI------QNI 170
                  D+L+  PGR+ D F+R  +  + ++ L++DEADRML+MGF   I      +  
Sbjct: 409 ----FENDILVACPGRLKDIFDRNIVSFSCVKFLILDEADRMLEMGFEEQIEYLVASRYS 464

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT    +  +++ +L+    +       +        +    +  K
Sbjct: 465 DMPSSEERQTLMFSATFPQRILNLAKRYLRPKYYLLTVGRVGSTTKNITQKLERVPEAEK 524

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K  L   ++  Q      +IF   K++   L  +L+  G     IHG+  Q  R   L +
Sbjct: 525 KDKLFD-IIYKQKQTDLVLIFVETKRSAEQLHSALKSSGIPSTTIHGDRRQSDREIALKD 583

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+A+RGLDIP+V HV  +D+P   ++Y HRIGRTGRAG  G A +   
Sbjct: 584 FKSGITPILVATDVASRGLDIPNVAHVIQYDLPKEMDDYTHRIGRTGRAGNKGVATSFYD 643

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
           + +      +   + +    +   L +    +E
Sbjct: 644 RNNRNLAVELYHYLREHEQEVPMWLENEKDAVE 676


>gi|190195544|gb|ACE73640.1| ATP-dependent RNA helicase DDX18 (predicted) [Sorex araneus]
          Length = 553

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 120/392 (30%), Positives = 201/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L   ++   + A+ + G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 61  SFASLSNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPA 120

Query: 60  LTILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K +   R    + IL PTRELA Q     ++    +  T  L++GG    A+ +K
Sbjct: 121 VELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTYHVHTYGLIMGGSNRSAEAQK 180

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 181 LGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTR 240

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+            T  T++          S+K  LL  
Sbjct: 241 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKTNATVDGLEQGYVVCPSEKRFLLLF 300

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 301 TFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSG 360

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
           +++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 361 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELG 419

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + ++    +S +   LEK+
Sbjct: 420 FLRYLKQSKVPLSEFEFSWSKISDIQSQLEKL 451


>gi|297192239|ref|ZP_06909637.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151271|gb|EFH31061.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 539

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 134/374 (35%), Positives = 207/374 (55%), Gaps = 10/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+ P+   A+   G + P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L 
Sbjct: 24  TFRDLGILPETAEALEAVGILSPFPIQEMTLPVALSGSDVIGQAKTGTGKTLGFGLPLLE 83

Query: 62  ILE----------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
            +           K       P+ L++ PTREL  QV ++    GK  N+ V  + GG  
Sbjct: 84  RVTVPADVEAGRAKPEQLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRA 143

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q + L++G DV++ TPGR+LD   + KL ++++  LV+DEAD MLD+GF+P ++ I 
Sbjct: 144 YEPQVEALKKGVDVIVGTPGRLLDLAGQRKLDLSHVRALVLDEADEMLDLGFLPDVEKII 203

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
             +P  RQT+LFSATM   +  ++  ++  P  I   +P     T+ +     Y  +S  
Sbjct: 204 QQLPAKRQTMLFSATMPGAVIGLARRYMSQPTHISATSPDDEGATVRNTTQRVYRAHSMD 263

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              +   +   +     +IFC  K+   ++   L ++GF+  A+HG++ Q +R + L  F
Sbjct: 264 KPEMVSRILQAEGRGLAMIFCRTKRTAADIADQLAQRGFASGAVHGDLGQGAREQALRAF 323

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAG  G A TLV  
Sbjct: 324 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGASGTAVTLVDW 383

Query: 352 EDIKHIDAIEKLIE 365
           +DI     I K ++
Sbjct: 384 DDIPRWQLINKALD 397


>gi|303279012|ref|XP_003058799.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459959|gb|EEH57254.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 485

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 127/385 (32%), Positives = 187/385 (48%), Gaps = 21/385 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +      V+  +  AG+  PTPIQ +  P VL   DV  +A+TG+GKT SF+LP + 
Sbjct: 61  TFEEASFPDYVLSELRAAGFPTPTPIQSQAWPTVLSGRDVVAVAETGSGKTLSFLLPAVV 120

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P  L+L PTRELA Q+      +G +  +  A + GG P   Q   L
Sbjct: 121 HVNAQPYLEPGDGPIALVLAPTRELAVQIQAEAAIFGASSKIKSACVYGGAPKGPQVSAL 180

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G ++   TPGR++D      + +  +   V+DEADRMLDMGF P I+ I+  +   RQ
Sbjct: 181 RDGVEICAATPGRLIDFIETRAVSLRRVTYFVLDEADRMLDMGFEPQIRKISDRIRPDRQ 240

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK-------- 231
           TLLF+AT   E++ V+ +FL +P  + V   S  A       V    +  K         
Sbjct: 241 TLLFTATWPKEVEGVAADFLHDPVTVRVGDASLKANVNIAQSVDVMDEDEKYGKLVSLLE 300

Query: 232 ------CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
                     +    +  + +  I+F   K  V  +   L   GF   +IHG+  Q  R 
Sbjct: 301 RQLDGGGKSAEDAEYAAASPRRIIVFLASKAKVDAVTRRLRTDGFPALSIHGDKSQEERE 360

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA-----ENYIHRIGRTGRAG 340
            +L  F+ GT  +M+A+D+AARGLD+ DV  V N D P+        +Y+HR+GRTGRAG
Sbjct: 361 WVLGEFRAGTSPVMLATDVAARGLDVKDVRCVINHDFPSSGASYLTLDYVHRVGRTGRAG 420

Query: 341 RHGKAFTLVAKEDIKHIDAIEKLIE 365
             G+A +     D +H  A+  L+ 
Sbjct: 421 ARGEAHSFFTSADARHAKALCALLR 445


>gi|152975383|ref|YP_001374900.1| DEAD/DEAH box helicase domain-containing protein [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152024135|gb|ABS21905.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 389

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 104/348 (29%), Positives = 179/348 (51%), Gaps = 8/348 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P +  A   AG+ + T IQ + IP +L   DV   + TGTGKT +++LP+L  +      
Sbjct: 7   PFLQQAWEKAGFKECTEIQAQAIPTILDGQDVIAESPTGTGKTLAYLLPLLHKI---NPE 63

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           V+ P+ +IL PTREL  Q+    +K+     ++ A LIGG   + Q +KL++   V++ +
Sbjct: 64  VKQPQVVILAPTRELVMQIHAEVQKFTAGTEISGASLIGGADIKRQVEKLKKHPKVIVGS 123

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGRIL+     KL M+ ++ +V DE D+++    I  I ++       RQ + FSATMT 
Sbjct: 124 PGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMIDTIFDVIKSTMRDRQLVFFSATMTK 183

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
           E ++V+ +F   P+ I V    + +          Y    ++                 +
Sbjct: 184 EAEEVARDFAVQPQFICVKRAETKSLVE-----HMYIVCERREKNEYVRRIMHTGQVKAV 238

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
            F N    +  +   L+ +     A+H    ++ R   +  F+ G +++++A+D+AARGL
Sbjct: 239 AFLNDPYRLDEIAEKLKYRKMKAAALHAEASKQEREATMRAFRSGKLEILLATDVAARGL 298

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           DI D+ HV + ++P+  + YIHR GRTGR G+ G   +LV  ++ + +
Sbjct: 299 DINDLTHVIHLELPDTLDQYIHRSGRTGRMGKEGTVISLVTPQEERKL 346


>gi|28900438|ref|NP_800093.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153839119|ref|ZP_01991786.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|260362342|ref|ZP_05775305.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260877390|ref|ZP_05889745.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260898427|ref|ZP_05906923.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|260902841|ref|ZP_05911236.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|28808749|dbj|BAC61926.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149747374|gb|EDM58342.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|308085134|gb|EFO34829.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308090862|gb|EFO40557.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308107910|gb|EFO45450.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|308111121|gb|EFO48661.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
          Length = 416

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 139/417 (33%), Positives = 221/417 (52%), Gaps = 16/417 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL P +V  +    Y +PTPIQ   IP VL   D+ G A TG+GKTA+F LP+L 
Sbjct: 9   TFADLGLIPTLVERLEALEYNQPTPIQSHAIPHVLDGRDMIGGANTGSGKTAAFSLPILQ 68

Query: 62  ILEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV--ALLIGGIPFEAQ 115
            + +       R      LIL PTRELA+QVA N + Y  +    +    + GG+    Q
Sbjct: 69  KILQQGESNDRRGNFVSHLILVPTRELASQVAYNVKSYSYHLRDKIKTVAVFGGVSVNPQ 128

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G D+++ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  I +L+P
Sbjct: 129 MLALRGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILALLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +QTLLFSAT  +++  ++++ L +P  +++ +  ++        V    + +    L+
Sbjct: 189 EKKQTLLFSATFPEKVTALAQHLLNDPVEVQLQSAEASTLVQRVFSVNKGEKTAVLAHLI 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q        +  +IF N K    +L   L K+G +    HG+  Q +R ++L  FK G 
Sbjct: 249 KQHQW-----RQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKSGE 303

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           IQ+++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G   +L+  +D  
Sbjct: 304 IQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDDYH 363

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           H   IEK  + +++    +   +       D ++              TG  ++K+N
Sbjct: 364 HFKVIEKKNKFQLEREQVEGFEVED-----DQSEAYFLPMKPRAKPAGTGKKKKKRN 415


>gi|301171467|ref|NP_001180345.1| ATP-dependent RNA helicase DDX3X isoform 2 [Homo sapiens]
          Length = 661

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 137/428 (32%), Positives = 216/428 (50%), Gaps = 29/428 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 241 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 300

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 301 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 360

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 361 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 420

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 421 WVEESDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH-NHARKNNPIPQ 401
           G A +   + +I     +       +D L      +   LE +    H   + +     +
Sbjct: 539 GLATSFFNERNINITKDL-------LDLLVEAKQEVPSWLENMAYEHHYKGSSRGRSKSR 591

Query: 402 KSTGFDRR 409
            S GF  R
Sbjct: 592 FSGGFGAR 599


>gi|300779595|ref|ZP_07089451.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
           33030]
 gi|300533705|gb|EFK54764.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
           33030]
          Length = 440

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 134/417 (32%), Positives = 225/417 (53%), Gaps = 9/417 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG++ ++V A+ ++G  +   IQ  T+PL L   D+ G A+TG GKT +F +P+L 
Sbjct: 7   TFAELGVAAEIVEALGESGIERVFSIQELTLPLALAGRDLIGQARTGMGKTFAFGVPLLD 66

Query: 62  ILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +    A       PR L++ PTRELA QV+++         + +  + GG P++ Q   
Sbjct: 67  RVFDDAAIEELDGTPRALVITPTRELAVQVSEDLTLAASKTPVRLTTIYGGRPYDEQLNA 126

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G DV++ TPGR+LD   RG L+++ + ILV+DEAD MLD+GF+P IQ +   +    
Sbjct: 127 LEAGVDVVVGTPGRLLDLHERGDLVLDRVAILVLDEADEMLDLGFLPDIQRLWGALSQPL 186

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATM   + K++     N         + +++  +      +  +      +   
Sbjct: 187 QTMLFSATMPAPILKLAREM-MNKPVHIRAESADSSQLHDTTKQVVFVSHKMDKPEVVAR 245

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   D     IIF   K+    +   + ++GF+V ++HG++ Q +R + L  F++G +++
Sbjct: 246 VLQADGRGRTIIFTRTKRTAAEVAEDVARRGFAVGSVHGDLGQSARERSLEAFRKGDVEI 305

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ DV HV N+  P+    Y+HRIGRTGRAGR G A TLV  ++     
Sbjct: 306 LVATDVAARGIDVDDVTHVINYQTPDDPMTYVHRIGRTGRAGRTGTAVTLVGFDETGKWK 365

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH-----ARKNNPIPQKSTGFDRRK 410
            I   +   +       S+     + + I +        AR+ + IP++S G  +++
Sbjct: 366 IISDELGLDMPEPPSWFSTSPELFDALSIPEDAKSSVGPAREVHGIPKRSGGEGQKQ 422


>gi|332252169|ref|XP_003275228.1| PREDICTED: ATP-dependent RNA helicase DDX18 [Nomascus leucogenys]
          Length = 671

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 122/392 (31%), Positives = 200/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADL-GL-SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L  L +   + A+ + G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 179 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPA 238

Query: 60  LTILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K R   R    + IL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 239 VELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK 298

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 299 LANGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTR 358

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T++          S+K  LL  
Sbjct: 359 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLF 418

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 419 TFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSG 478

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
            ++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 479 TLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELG 537

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + D+    +S +   LEK+
Sbjct: 538 FLRYLKQSKVPLSEFDFSWSKISDIQSQLEKL 569


>gi|114580554|ref|XP_515753.2| PREDICTED: ATP-dependent RNA helicase DDX18 isoform 3 [Pan
           troglodytes]
          Length = 670

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 122/392 (31%), Positives = 200/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADL-GL-SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L  L +   + A+ + G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 178 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPA 237

Query: 60  LTILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K R   R    + IL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 238 VELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK 297

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 298 LANGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTR 357

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T++          S+K  LL  
Sbjct: 358 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLF 417

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 418 TFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSG 477

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
            ++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 478 TLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELG 536

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + D+    +S +   LEK+
Sbjct: 537 FLRYLKQSKVPLSEFDFSWSKISDIQSQLEKL 568


>gi|12654791|gb|AAH01238.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Homo sapiens]
 gi|13097183|gb|AAH03360.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Homo sapiens]
 gi|19353239|gb|AAH24739.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Homo sapiens]
          Length = 670

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 122/392 (31%), Positives = 200/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADL-GL-SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L  L +   + A+ + G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 178 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPA 237

Query: 60  LTILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K R   R    + IL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 238 VELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK 297

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 298 LGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTR 357

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T++          S+K  LL  
Sbjct: 358 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLF 417

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 418 TFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSG 477

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
            ++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 478 TLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELG 536

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + D+    +S +   LEK+
Sbjct: 537 FLRYLKQSKVPLSEFDFSWSKISDIQSQLEKL 568


>gi|62630202|gb|AAX88947.1| unknown [Homo sapiens]
          Length = 546

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 122/392 (31%), Positives = 200/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADL-GL-SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L  L +   + A+ + G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 54  SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPA 113

Query: 60  LTILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K R   R    + IL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 114 VELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK 173

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 174 LGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTR 233

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T++          S+K  LL  
Sbjct: 234 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLF 293

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 294 TFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSG 353

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
            ++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 354 TLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELG 412

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + D+    +S +   LEK+
Sbjct: 413 FLRYLKQSKVPLSEFDFSWSKISDIQSQLEKL 444


>gi|38327634|ref|NP_006764.3| ATP-dependent RNA helicase DDX18 [Homo sapiens]
 gi|20532388|sp|Q9NVP1|DDX18_HUMAN RecName: Full=ATP-dependent RNA helicase DDX18; AltName: Full=DEAD
           box protein 18; AltName: Full=Myc-regulated DEAD box
           protein; Short=MrDb
 gi|119615599|gb|EAW95193.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18, isoform CRA_b [Homo
           sapiens]
 gi|119615600|gb|EAW95194.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18, isoform CRA_b [Homo
           sapiens]
          Length = 670

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 122/392 (31%), Positives = 200/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADL-GL-SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L  L +   + A+ + G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 178 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPA 237

Query: 60  LTILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K R   R    + IL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 238 VELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK 297

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 298 LGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTR 357

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T++          S+K  LL  
Sbjct: 358 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLF 417

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 418 TFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSG 477

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
            ++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 478 TLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELG 536

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + D+    +S +   LEK+
Sbjct: 537 FLRYLKQSKVPLSEFDFSWSKISDIQSQLEKL 568


>gi|1498229|emb|CAA67295.1| RNA helicase [Homo sapiens]
          Length = 610

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 122/392 (31%), Positives = 200/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADL-GL-SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L  L +   + A+ + G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 118 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPA 177

Query: 60  LTILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K R   R    + IL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 178 VELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK 237

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 238 LGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTR 297

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T++          S+K  LL  
Sbjct: 298 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLF 357

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 358 TFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSG 417

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
            ++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 418 TLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELG 476

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + D+    +S +   LEK+
Sbjct: 477 FLRYLKQSKVPLSEFDFSWSKISDIQSQLEKL 508


>gi|321472714|gb|EFX83683.1| hypothetical protein DAPPUDRAFT_230663 [Daphnia pulex]
          Length = 429

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 205/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L  K++  +   G+ +P+ IQ + I   +  HDV   AQ+GTGKTA+F + +L 
Sbjct: 57  NFDEMKLKEKLLRGIYAYGFERPSAIQQRAILPCIMGHDVIAQAQSGTGKTATFAISLLQ 116

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + L+L PTRELA Q+       G   +      IGG       +KL +
Sbjct: 117 QIDIDANE---CQALVLAPTRELAQQIQKVVLALGDYMDAQCHACIGGTNVREDLRKLSQ 173

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L  N I++ V+DEAD ML  GF   I ++   +P   Q +
Sbjct: 174 GVHVVVGTPGRVFDMINRRALKTNCIKVFVLDEADEMLSRGFKDQIYDVFKNLPAEVQVI 233

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+ +F++NP RI V     T E I+  +V    +  K   L       
Sbjct: 234 LLSATMPADVMEVTNHFMRNPIRILVKKEELTLEGIKQFYVQVEREEWKLDTLCDL--YD 291

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   + ++ F+V A+HG ++Q+ R  I+  F+ G+ ++++ 
Sbjct: 292 TLSITQAVIFCNTRRKVDWLTEKMHERDFTVSAMHGEMEQKERDVIMREFRSGSSRVLIT 351

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+PN  ENYIHRIGR GR GR G A   V +ED + +  IE
Sbjct: 352 TDLLARGIDVQQVSLVINYDLPNHRENYIHRIGRGGRFGRKGVAINFVTEEDWRVLRDIE 411

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 412 QYYNTTIEAMPMNVADL 428


>gi|312087983|ref|XP_003145684.1| hypothetical protein LOAG_10109 [Loa loa]
 gi|307759153|gb|EFO18387.1| hypothetical protein LOAG_10109 [Loa loa]
          Length = 537

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 95/428 (22%), Positives = 175/428 (40%), Gaps = 16/428 (3%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-----LT 61
           GL  +++  + + G  +PTPIQ++ IP++LQ+ D+       +GKT +F LP+       
Sbjct: 121 GLPRELISNLEEFGITEPTPIQMQAIPVMLQKKDLL-----WSGKTLAFALPIIFDVVRC 175

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                  +  M   ++LEPT ELA Q    F K+ +N  ++    + G         +  
Sbjct: 176 KSHTAEDQYPMLNAVVLEPTYELAKQTYIQFLKFSQNLPVSCC-FLEGDEIPENANIVIS 234

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             + L+    +          L+ +    + D  +         +     +    +    
Sbjct: 235 TPNKLVHALKKNNKISTGLNWLIIDESDRLFDTTEGNDRCFRNQFATIYQACNGNSVCRA 294

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT + E++   +  L +   I + + +S   +++   +   +++ K   L      S
Sbjct: 295 FFSATFSYEVEDWCKRNLCDMAMICIGSRNSAVSSVKQELIFAGSEHGKIIGLKALFQNS 354

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +      +    +   +       +    V  I     +  R   ++ F+ G I  +V 
Sbjct: 355 FEPPALIFVQSKLRAKQLVPVIESLQPPIPVKMISSEKTETERESAIAEFRSGHIWALVC 414

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL  RGLD+  V  V NFD+P    +YIHRIGRTGRAGR G A T   + D+  I  I 
Sbjct: 415 TDLMGRGLDLSGVNLVVNFDLPTSIISYIHRIGRTGRAGRKGHAVTYFTESDLNFIRPIA 474

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
            +I++    +      +  P +K       HA K     +K+ GF ++      +    P
Sbjct: 475 TVIKQAGFEVPEYTLKMRKPTKKEKKKLLRHAPK-----RKNIGFVKKADEKRGKDEKEP 529

Query: 422 LKESEKIS 429
            ++ E ++
Sbjct: 530 RRKKEAVT 537


>gi|238919400|ref|YP_002932915.1| ATP-dependent RNA helicase DbpA [Edwardsiella ictaluri 93-146]
 gi|238868969|gb|ACR68680.1| ATP-independent RNA helicase DbpA [Edwardsiella ictaluri 93-146]
          Length = 457

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 133/373 (35%), Positives = 211/373 (56%), Gaps = 9/373 (2%)

Query: 2   DFADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            FA+L  L  + +  + + GY   TP+Q  T+P +L   DV   A+TG+GKTA+F L +L
Sbjct: 3   SFAELNALPEEQLNNLNELGYQTMTPVQAATLPAILAGKDVRAQAKTGSGKTAAFGLGLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++  R    + ++L+L PTRELA QVA    +  +       L + G +PF AQ   L
Sbjct: 63  QHIDASR---FITQSLVLCPTRELADQVAAALRRLARYMPNIKVLTLCGGVPFGAQRDSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +++ TPGR+LDH  +  L +  ++ L++DEADRMLDMGF   +  + S  P  RQ
Sbjct: 120 IHAPHIIVATPGRLLDHLKKETLSLEALQTLILDEADRMLDMGFADALDEVISWAPEKRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   E+  +S    ++P  IE++T        +  +  + +        L Q L
Sbjct: 180 TLLFSATWPAEIAAISRRIQRDPLTIEIDTDGELPAVEQRFYEVSRSGK----TGLLQAL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            SQ    + ++FCN KK+   +  +LE+ G SV  +HG+++QR R + L  F  G+ +++
Sbjct: 236 LSQHQPASCVVFCNTKKDCQAVYDALEESGQSVLVLHGDMEQRDRDQTLVRFANGSSRVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +L A E+ +  +A
Sbjct: 296 VATDVAARGLDIKALAMVINYELSWDPEVHVHRIGRTARAGASGLAISLCAPEEAQRANA 355

Query: 360 IEKLIEKKVDWLN 372
           +E+++  ++ W  
Sbjct: 356 LEEMLGVRLQWQP 368


>gi|328856884|gb|EGG06003.1| hypothetical protein MELLADRAFT_48571 [Melampsora larici-populina
           98AG31]
          Length = 434

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 99/378 (26%), Positives = 165/378 (43%), Gaps = 5/378 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q + IP  +   DV   A++G GKTA FV   L  
Sbjct: 53  FRDFLLKPELLRAISDLGFEHPSEVQQECIPQAILGMDVLCQAKSGMGKTAVFVTATLQQ 112

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++     V M       E   ++  + A   +         V   +         K  ++
Sbjct: 113 IDPKDGEVSMLVLCHTRELAYQIRNEYARFSKYMPDVRTAVVYGGVSIKQDADMLKAKDK 172

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+      G L  N +   V+DE D+M   +     +Q +    P ++Q 
Sbjct: 173 CPHIIVGTPGRLNALVRDGLLKCNTVRTFVLDECDKMLESVDMRRDVQQVFLATPHSKQV 232

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ +++ + + F+QNP  I V+  +               + +K        L 
Sbjct: 233 MMFSATLSKDIRPICKKFMQNPLEIYVDDEAKLTLHGLQQHFVKIEEAAKNR--KLNDLL 290

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                    IF       V L   L    F   AIH  + Q  R+     FK    +++V
Sbjct: 291 DTLEFNQVCIFVKSVSRAVQLDQLLRDCNFPSIAIHSGLGQEERIARYKQFKAFEKRILV 350

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+  RG+D+  V  V N+D P  A++Y+HR+GR GR G  G A T VA + D   +DA
Sbjct: 351 ATDIFGRGIDVERVNIVVNYDTPGEADSYLHRVGRAGRFGTKGLAITFVASDGDQTVLDA 410

Query: 360 IEKLIEKKVDWLNGDLSS 377
           I+   E  +  L   + +
Sbjct: 411 IQSRFEVAITELPDHIEA 428


>gi|156554090|ref|XP_001600475.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 782

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 111/388 (28%), Positives = 195/388 (50%), Gaps = 5/388 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F DL LS + +  + D+ Y+  T IQ ++I L L+ +D+ G A+TG+GKT +F++P M 
Sbjct: 42  KFTDLPLSMQTLKGLKDSEYIDLTDIQRQSIGLALKGNDILGAAKTGSGKTLAFLIPVME 101

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  K   R+     LI+ PTRELA Q+ +   K G+ ++++  L+IGG     + K+L+
Sbjct: 102 ILYCKQWTRLDGLGALIITPTRELAYQIYETLRKVGRYHDISAGLIIGGKDLHFEKKRLD 161

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      +            N++ILV+DEADR LDMGF   + +I   +P  RQT
Sbjct: 162 QCNIIICTPGRLLQHMDENPLFDCVNMKILVLDEADRCLDMGFEKTMNSIIENLPLERQT 221

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT T  ++ ++   L++P  I V+  ++              +  +K   +     
Sbjct: 222 LLFSATQTKTVKDLARLSLKDPLYISVHENAAHTTPEGLQQSYIVCELEEKL-AMLWSFI 280

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC--AIHGNIDQRSRMKILSNFKEGTIQL 298
                +  I+F +  K V  +  +  +    V   +++G + Q  RM I  +F +    +
Sbjct: 281 RNHLKQKIIVFFSSCKQVKYIFEAFCRMRPGVSLLSLYGTLHQLKRMSIYESFCKKQHAV 340

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+AARGLD P V  V   D P     YIHR GRT R    G++  ++   + K + 
Sbjct: 341 LFATDIAARGLDFPAVNWVVQMDCPEDVNAYIHRAGRTARFQSGGESLLVLLPSEEKIVH 400

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKID 386
            +++  +  ++ +  + + L  P  K++
Sbjct: 401 QLKER-KIPINMIKINPNKLQSPQRKLE 427


>gi|313233924|emb|CBY10092.1| unnamed protein product [Oikopleura dioica]
          Length = 611

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 136/394 (34%), Positives = 203/394 (51%), Gaps = 20/394 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+  L   +  A+  A Y  PTP+Q   IP++ +  D+   AQTG+GKTA+F+LPML+
Sbjct: 141 TFAECELGDIINEAIKLANYTVPTPVQKNAIPIINKGRDLMSCAQTGSGKTAAFLLPMLS 200

Query: 62  ILEKGRA--------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
            +                   R   P  L+L PTRELA+Q+ +   K+     +   ++ 
Sbjct: 201 SIFHSGPGESANQNSSGYRGRRKIYPLALVLSPTRELASQIYEESRKFAYRSQVRPCVIY 260

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG    AQ + L+RG  +L+ TPGR+ D  +RGK+ ++    L +DEADRMLDMGF P I
Sbjct: 261 GGADVGAQMRDLDRGCHLLVATPGRLADFLDRGKIGLDYCRYLCLDEADRMLDMGFEPQI 320

Query: 168 QNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I           RQTL+FSAT   E+Q ++ +FL N   + V    ST++ I    V 
Sbjct: 321 RRIVEKDAMPPKGDRQTLMFSATFPKEIQHLARDFLDNYIFLTVGRVGSTSQNITQKVVW 380

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
                             Q+T    ++F   KK    L + L  +GF    IHG+ +QR 
Sbjct: 381 VDENDKINFLTDLLTATDQNTCF--VVFTETKKGADYLDNYLYDRGFRSTCIHGDRNQRE 438

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L +F+E    ++VA+ +AARGLDIP+V HV NFD+P+  + Y+HRIGRTGR G  G
Sbjct: 439 REGALKSFREAVTPVLVATAVAARGLDIPNVRHVINFDLPSDIDEYVHRIGRTGRVGNIG 498

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
            A +    ++   +  + +L+ +    +   L  
Sbjct: 499 LATSFFNDKNSNIVRDLLELLIEAKQEVPEWLEK 532


>gi|198419649|ref|XP_002120760.1| PREDICTED: similar to ATP-dependent RNA helicase DDX19B (DEAD box
           protein 19B) (DEAD box RNA helicase DEAD5) [Ciona
           intestinalis]
          Length = 484

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 100/395 (25%), Positives = 176/395 (44%), Gaps = 16/395 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L  ++V  +   G+ +P+ IQ   +PL++     ++   +Q+GTGKTA+FVL M
Sbjct: 96  SFEELNLKEELVQGIFAMGFNRPSKIQETALPLLVCNPPQNMIAQSQSGTGKTAAFVLTM 155

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +       + P+ + L PT ELA Q     E+ GK                 +N  +
Sbjct: 156 LSRINI---ENKYPQCVCLSPTYELALQTGKAVEQMGKYLKGLQVAYAIRGNQVQRNTNI 212

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +       +     R   L      ++ +    +   GF      I   +    Q
Sbjct: 213 PAQIVI-GTPGTMLDWTRKRVFDLGKVEVFVLDEADVMIDTQGFKDQSIRIQRQLSNKCQ 271

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  +++ + +E  + +P  I++     T E I+  +V       K  +++    
Sbjct: 272 LLLFSATYDEQVMRFAEQIVHHPNIIKLRRNEETLENIKQYYVKCSTIEKKYESIINL-- 329

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               ++   IIFC+ +K    L   + +    V  + G +D   R  +L  FKE   +++
Sbjct: 330 YGVLSVGQAIIFCHTRKTAAWLAKRMCEDKHIVALLSGELDVSQRAAVLRRFKEAKERVL 389

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLVAKE- 352
           V +++ +RG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A   VA + 
Sbjct: 390 VTTNVCSRGIDVEQVTLVINFDLPVDYNRRPDCETYLHRIGRTGRFGKTGVAINFVAHDQ 449

Query: 353 DIKHIDAIEKLIEKKVDWLN-GDLSSLNPPLEKID 386
           D++ +  I+     K+  L+ G+ + +   L + D
Sbjct: 450 DMRILMEIQDHFGIKITNLDTGNHADMEEKLGEED 484


>gi|307610952|emb|CBX00571.1| hypothetical protein LPW_22891 [Legionella pneumophila 130b]
          Length = 468

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 143/407 (35%), Positives = 225/407 (55%), Gaps = 16/407 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L  +++ ++  + Y   TPIQ++++P++L+  D+   A+TG+GKTA+F L +L
Sbjct: 11  LSFSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDLIAQAKTGSGKTAAFALSLL 70

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL-IGGIPFEAQNKKL 119
             L+     V+    L+L PTRELA QV+    +          +   GGIP + Q   L
Sbjct: 71  NNLKISFFAVQ---ALVLCPTRELAEQVSQAIRRLACFMPNVKIINLSGGIPMQPQLDSL 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA +++ TPGRIL H     L ++ ++ LV+DEADRMLDMGF   I+NI S+ P  RQ
Sbjct: 128 RHGAHIIVGTPGRILKHLKNASLDLSQVKALVLDEADRMLDMGFFDDIKNIISVCPKQRQ 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +E++++S+ F++NPK + V TP    +  +H +  T          L + L
Sbjct: 188 TLLFSATYPEEIKQLSKQFMKNPKEVYVETPLDEIDIEQHFYEVTKQTQK---FPLLKSL 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + +IFCN K+  + +   L  +GFS  A++G+++Q  R   +  F   +  ++
Sbjct: 245 LLHYQPVSVLIFCNTKQQTIEVTDQLINEGFSAIALNGDMEQIERDLAVLRFANQSCSIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++  V NFD+    + +IHRIGRTGRAG  G A ++V   D + I A
Sbjct: 305 VATDVAARGLDIKELSAVINFDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPADAQRICA 364

Query: 360 IEKLIEKKVDWLNGDL------SSLNPPLEKIDIAQHNHARKNNPIP 400
           IE      + W N +       + L P +  + IA     +K+   P
Sbjct: 365 IEDNYPHPIHWGNINELENHNTARLVPEMVTLCIA---SGKKDKIRP 408


>gi|195553569|ref|XP_002076688.1| GD11942 [Drosophila simulans]
 gi|194202067|gb|EDX15643.1| GD11942 [Drosophila simulans]
          Length = 481

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 103/411 (25%), Positives = 172/411 (41%), Gaps = 32/411 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  L L   ++  +   G+  P+ IQ   +P +L     ++   +Q+GTGKTA+FVL M
Sbjct: 74  TFEALHLKASLLKGIYAMGFNTPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 133

Query: 60  LTILEKGRARVR------------------MPRTLILEPTRELAAQVADNFEKYGKNYNL 101
           L+ +  G    +                   PR L L PT ELA Q  +   + G+    
Sbjct: 134 LSRVNVGLNHPQTPFRLRADRATRAGTLLDYPRVLCLSPTYELAIQTGEVAARMGQFCRE 193

Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
                        ++KK+E    +             R   +      ++ +    +   
Sbjct: 194 IKLRFAVRGEEVDRSKKIEEHILIGTPGKLLDWGIKFRLFDMKKITVFVLDEADVMIATQ 253

Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
           G       I  ++    Q L FSAT   E+   +   + +P  I +     + E I+  +
Sbjct: 254 GHHDQCIRIHKMLNPHCQMLFFSATYGKEVMDFARLIVADPTIIRLMREEESLENIKQYY 313

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
           V    +  K      Q +    ++   IIFC+ ++    L   +   G SV  + G++  
Sbjct: 314 VKCKNEEGKY--NAIQNIYGCISVGQAIIFCHTRRTAAWLAAKMTSDGHSVAVLTGDLTV 371

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA------ENYIHRIGR 335
             R+ +L  F+ G  ++++ +++ +RG+DI  V  V NFD+P         E Y+HRIGR
Sbjct: 372 VQRLDVLDRFRSGLEKVLITTNILSRGIDIEQVTIVVNFDLPVDVDGKADCETYLHRIGR 431

Query: 336 TGRAGRHGKAFTLVAKE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
           TGR G+ G A  L+  E  +K    IEK   KK++ LN D +     +EKI
Sbjct: 432 TGRFGKSGIAINLITDEKTMKVCSDIEKHFNKKIEVLNTDSAD---DIEKI 479


>gi|254911116|ref|NP_001157180.1| Vasa4 protein [Acyrthosiphon pisum]
          Length = 547

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 104/386 (26%), Positives = 174/386 (45%), Gaps = 9/386 (2%)

Query: 2   DFADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F  L  +  +++  +    YVKPTPIQ  +IP++L   D+   AQTG+GKT ++VLP++
Sbjct: 131 SFDTLNNIPDRLMENIKMCNYVKPTPIQKYSIPIILSGKDLMATAQTGSGKTVAYVLPII 190

Query: 61  TILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
             L               P+ +I+ PTRELA Q+     K  +   ++  +  GG     
Sbjct: 191 QKLLMDPQILVKDRNHSEPQVVIMAPTRELAVQIKMVVLKLARGTGISSFVCYGGTLVSH 250

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q  ++ +G  +L+ TPGR+ +    G +  +++   V+DE D+MLD+   P I  I    
Sbjct: 251 QKNQILKGCHILVATPGRLNEFVQHGFITFSSVRFFVLDEVDKMLDIDLKPDIDKILDHF 310

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNP-KRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
                    +  ++  L   +++  +    +  +        +        +   ++   
Sbjct: 311 SMPSVMDRQTIMLSATLPDATQHLAKFYLNKNYLFLAVGIISSASKDIKQNFCLVNRFNK 370

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                   +      I+F NQK     L   L ++     +IHG+  Q  R   L +F+ 
Sbjct: 371 RDILTSILKKDSVGTIVFVNQKWTADFLATYLCEKHIPSTSIHGDRLQDQREIALDDFRT 430

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-E 352
             + ++VA+ +AARGLDI  V HV N+D+P   E Y+ RIGRTGR G  G A +L    E
Sbjct: 431 RKMNVLVATTVAARGLDIKCVNHVLNYDMPLVIEEYVQRIGRTGRLGNKGIATSLFDPDE 490

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           D   +D I  ++      +   L  L
Sbjct: 491 DYLLVDPIISILASANQEIPNWLLKL 516


>gi|229582467|ref|YP_002840866.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           Y.N.15.51]
 gi|228013183|gb|ACP48944.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           Y.N.15.51]
          Length = 360

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 122/362 (33%), Positives = 196/362 (54%), Gaps = 22/362 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    LS  +  A+ +AGY+KPT +Q   IP ++    V   A+TG+GKTA++V+P+L  
Sbjct: 19  FE--NLSEDLRKALNEAGYIKPTRVQEVVIPELMNSKSVIVQAKTGSGKTAAYVIPILER 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                         IL P+RELA Q+ D  +K GK   + V+L+IGG+ ++ Q +     
Sbjct: 77  NSTAL---------ILSPSRELATQILDEIKKLGKYKQIDVSLIIGGMSYDDQRQSK--- 124

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LD +++GK+  +  + +++DEADRMLDMGFI  I+ I +          
Sbjct: 125 --IVVGTPGRLLDLWSKGKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCNAKIA-GF 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ DE+  +++ F ++ + I ++      E  +           K   LL++     
Sbjct: 182 FSATIPDEIMTLAKEFSKDLREIVLDEYKPVEEVKQKFVKVRNDWNDKVSKLLEE----- 236

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  ++F   +     L + L+ +G +V  + G++ Q  R+K    FK+G   ++VA+
Sbjct: 237 INGEKILVFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVAT 296

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLA+RG+DI DV  V NFD+P   E YIHR+GRTGR GR G+A T     +   I  I  
Sbjct: 297 DLASRGIDIIDVNKVINFDIPRDVETYIHRVGRTGRMGRVGQAITFYTFREADMIKRINN 356

Query: 363 LI 364
           L+
Sbjct: 357 LL 358


>gi|54297986|ref|YP_124355.1| ATP-dependent RNA helicase DbpA [Legionella pneumophila str. Paris]
 gi|53751771|emb|CAH13194.1| hypothetical protein lpp2042 [Legionella pneumophila str. Paris]
          Length = 468

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 136/375 (36%), Positives = 214/375 (57%), Gaps = 7/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L  +++ ++  + Y   TPIQ++++P++L+  D+   A+TG+GKTA+F L +L
Sbjct: 11  LSFSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDIIAQAKTGSGKTAAFALCLL 70

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL-IGGIPFEAQNKKL 119
             L+     V+    L+L PTRELA QV+    +          +   GGIP + Q   L
Sbjct: 71  NNLKISFFAVQ---ALVLCPTRELAEQVSQAIRRLACLMPNVKIINLSGGIPMQPQLDSL 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA +++ TPGRIL H     L ++ ++ LV+DEADRMLDMGF   I+NI S+ P  RQ
Sbjct: 128 RHGAHIIVGTPGRILKHLKNASLDLSQVKALVLDEADRMLDMGFFDDIKNIISVCPKQRQ 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +E++++S+ F+++PK + V TP    +  +H +  +          L + L
Sbjct: 188 TLLFSATYPEEIKRLSKQFMKDPKEVHVVTPPEEIDIEQHFYEVSRHAQK---FPLLKSL 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + +IFCN K+  V +   L  +GFS  A++G+++Q  R   +  F   +  ++
Sbjct: 245 LLHYRPVSVLIFCNTKQQTVEVTDQLINEGFSAIALNGDMEQVERDLAVLRFANQSCSIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++  V NFD+    + +IHRIGRTGRAG  G A ++V   D + I A
Sbjct: 305 VATDVAARGLDIKELSAVINFDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPADAQRICA 364

Query: 360 IEKLIEKKVDWLNGD 374
           IE      + W N +
Sbjct: 365 IEDNYPHPIHWGNIN 379


>gi|213410166|ref|XP_002175853.1| translation initiation factor eIF4A [Schizosaccharomyces japonicus
           yFS275]
 gi|212003900|gb|EEB09560.1| translation initiation factor eIF4A [Schizosaccharomyces japonicus
           yFS275]
          Length = 392

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+GL P+++  +   G+ +P+ IQ + I  +L   DV   AQ+GTGKTA+F + +L 
Sbjct: 20  SFDDMGLKPELLRGIYAYGFERPSAIQQRAIVPILGDRDVLAQAQSGTGKTATFSISVLQ 79

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++  + LIL PTRELA Q+       G   N+     IGG         L+ 
Sbjct: 80  KIDTS---LKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVREDMAALQA 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + +++ V+DEAD ML  GF   I +I  L+P T Q +
Sbjct: 137 GVHVVVGTPGRVHDMIQRRALPTDAVKMFVLDEADEMLSRGFKDQIYDIFQLLPPTSQVV 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  +VA   +  K   L       
Sbjct: 197 LLSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDL--YE 254

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L ++ F+V ++HG++DQ  R  ++  F+ G+ ++++ 
Sbjct: 255 TITVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDILMHEFRTGSSRILIT 314

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G +   V  ED++ +  IE
Sbjct: 315 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTSEDVRMMREIE 374

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 375 QFYNTHIEEMPMNIADL 391


>gi|237681149|ref|NP_001153721.1| ATP-dependent RNA helicase belle [Tribolium castaneum]
 gi|270008148|gb|EFA04596.1| belle [Tribolium castaneum]
          Length = 699

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 138/400 (34%), Positives = 204/400 (51%), Gaps = 20/400 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L+  +   +  A Y  PTP+Q   IP+++ + DV   AQTG+GKTA+F++P+L 
Sbjct: 216 SFEEVQLTEIIRNNINLARYDTPTPVQKYAIPIIVGKRDVMACAQTGSGKTAAFLVPILN 275

Query: 62  ILEKG---------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
            + +            R + P  L+L PTRELA Q+ D  +K+     +   ++ GG   
Sbjct: 276 QMYEHGPPNITHGRSRRKQYPLGLVLAPTRELATQIYDESKKFAYRSRVRPCVVYGGAHI 335

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF----IPYIQ 168
             Q + L+RG  +L+ TPGR+LD  +RG++ ++    LV+DEADRMLDMGF       ++
Sbjct: 336 GDQMRDLDRGCHLLVATPGRLLDMIDRGRIGLDYCRYLVLDEADRMLDMGFELQIRRIVE 395

Query: 169 NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
             T      RQTL+FSAT    +Q ++ +FL N   + V    ST+E I    V      
Sbjct: 396 KETMPKTGERQTLMFSATFPSPIQMLARDFLDNYIFLAVGRVGSTSENITQKVVWVEEHD 455

Query: 229 SKKCALLQQLLQSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            +   L                 ++F   KK   +L   L  +G+ V +IHG+  QR R 
Sbjct: 456 KRSFLLDLLNAAEMSQPSAESLTLVFVETKKGADSLEEFLHFEGYPVTSIHGDRSQRERE 515

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L  F+ G   ++VA+ +AARGLDIP V HV NFD+P+  E Y+HRIGRTGR G  G A
Sbjct: 516 DALRQFRSGNTPILVATAVAARGLDIPHVKHVINFDLPSDIEEYVHRIGRTGRMGNLGLA 575

Query: 346 FTLVAKEDIKHIDAIEK-LIEKKVD---WLNGDLSSLNPP 381
            +     +      +   LIE K +   WL G  +    P
Sbjct: 576 TSFFNDRNRNLASGLLDLLIEAKQEYPSWLEGVAADGRMP 615


>gi|20373098|dbj|BAB91216.1| RNA helicase [Mesocricetus auratus]
          Length = 662

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 130/396 (32%), Positives = 208/396 (52%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 241 QIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 300

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 301 YGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 360

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 361 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 420

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 421 WVEEMDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   + +I     +  L+ +    +   L ++
Sbjct: 539 GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 574


>gi|307181904|gb|EFN69344.1| ATP-dependent RNA helicase vasa [Camponotus floridanus]
          Length = 355

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 129/355 (36%), Positives = 198/355 (55%), Gaps = 12/355 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL   ++  +  +GY KPTP+Q   IP+++   D+   AQTG+GKTA+FV+P+L  
Sbjct: 1   FNQTGLRTILLDNIKKSGYTKPTPVQKYAIPIIMSGRDLMACAQTGSGKTAAFVVPILHT 60

Query: 63  LEKGRARV------RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           L +    +        P+ LI+ PTREL  Q+    +K+  N  +   +  GG       
Sbjct: 61  LLENPRDLITTSTSCEPQVLIVSPTRELTQQIYQQAKKFSLNSIIRCEVAYGGTSVSHNR 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ----NITS 172
           +K+  G  VL+ TPGR+LD   RG++ ++++   V+DEADRMLDMGF+P I+    + T 
Sbjct: 121 EKIFAGCHVLVATPGRLLDFIGRGRIKLSSLRFFVLDEADRMLDMGFLPDIEKIVDHETM 180

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK- 231
           +    RQTL+FSAT   E+Q+++  FL+N   + V         ++  F     Q  K+ 
Sbjct: 181 VPAEERQTLMFSATFPSEIQELAGRFLKNYLFLAVGIVGGACADVQQNFYQASGQPEKRK 240

Query: 232 -CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
               L        +++  ++F  QK++   +   L +  F   +IHG+  QR R + LS+
Sbjct: 241 LLKELLDKQSQMGSIEGTLVFVEQKRHTDFIAAFLSESNFPTTSIHGDRLQREREEALSD 300

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           FK G + ++VA+ +AARGLDI +V HV NFD+P   + Y+HRIGRTGR G  GKA
Sbjct: 301 FKRGKMSILVATAVAARGLDIKNVAHVINFDLPKTIDEYVHRIGRTGRVGNRGKA 355


>gi|290957574|ref|YP_003488756.1| helicase [Streptomyces scabiei 87.22]
 gi|260647100|emb|CBG70199.1| putative helicase [Streptomyces scabiei 87.22]
          Length = 865

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 137/374 (36%), Positives = 210/374 (56%), Gaps = 10/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+ P+   A+   G + P PIQ  T+P+ L   D+ G A+TGTGKT  F LP+L 
Sbjct: 31  TFRDLGIFPETAEALEAVGIITPFPIQEMTLPVALTGTDIIGQAKTGTGKTLGFGLPLLE 90

Query: 62  I----------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
                        K    V  P+ L++ PTREL  QV ++    GK  N+ V  + GG  
Sbjct: 91  RVVVPADVEAGRAKPEDLVDSPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRA 150

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q + L++G DV+I TPGR+LD   + KL + N++ LV+DEAD MLD+GF+P ++ I 
Sbjct: 151 YEPQVEALKKGVDVVIGTPGRLLDLAGQKKLNLKNVKCLVLDEADEMLDLGFLPDVEKII 210

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +++P  RQT+LFSATM   +  ++  ++  P  I   +P     T+ +     Y  ++  
Sbjct: 211 NMLPARRQTMLFSATMPGAVIGLARRYMSQPTHIRATSPDDEGATVRNTSQHIYRAHNMD 270

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L   +   D     ++FC  K+   +L   L+++GF+  A+HG++ Q +R + L  F
Sbjct: 271 KPELVARILQADGRGLVMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAF 330

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAG  G A TLV  
Sbjct: 331 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGAKGIAITLVDW 390

Query: 352 EDIKHIDAIEKLIE 365
           +DI     I K ++
Sbjct: 391 DDIPRWQLINKALD 404


>gi|227518643|ref|ZP_03948692.1| ATP-dependent RNA helicase [Enterococcus faecalis TX0104]
 gi|227553173|ref|ZP_03983222.1| ATP-dependent RNA helicase [Enterococcus faecalis HH22]
 gi|227073900|gb|EEI11863.1| ATP-dependent RNA helicase [Enterococcus faecalis TX0104]
 gi|227177699|gb|EEI58671.1| ATP-dependent RNA helicase [Enterococcus faecalis HH22]
 gi|315575567|gb|EFU87758.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
 gi|315579991|gb|EFU92182.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
          Length = 452

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 123/400 (30%), Positives = 199/400 (49%), Gaps = 13/400 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P +  A+ + G+ +PT +Q K IP++ +   V G +QTG+GKT +F+LP++ 
Sbjct: 6   SFKQFQFQPFINEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLMD 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNKK 118
            ++     V++    I  P+RELA Q+    ++  +     + +             NK 
Sbjct: 66  KVKPTIDEVQIV---ITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKL 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +   V+I TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I   +P   
Sbjct: 123 KHQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+   + +L+NP    +   +  +ETI        +   K    +   
Sbjct: 183 QMLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETI---DNWLISTKGKNSNKIIYQ 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +       I+F N K+ V  +   L+ QG  V  IHG+I  R R +++   +    Q 
Sbjct: 240 LLTIGHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQY 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N +VP+  + +IHR+GRTGR G +G A TL +  D + I 
Sbjct: 300 VVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEAIT 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
            IE+L    V +   ++ +    +E  D  +     K+  
Sbjct: 360 QIEQL---GVSFKPKEIKN-GEIVETYDRNRRTKREKSRE 395


>gi|29375944|ref|NP_815098.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis V583]
 gi|257419189|ref|ZP_05596183.1| helicase [Enterococcus faecalis T11]
 gi|29343406|gb|AAO81168.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis V583]
 gi|257161017|gb|EEU90977.1| helicase [Enterococcus faecalis T11]
          Length = 449

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 123/400 (30%), Positives = 199/400 (49%), Gaps = 13/400 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P +  A+ + G+ +PT +Q K IP++ +   V G +QTG+GKT +F+LP++ 
Sbjct: 3   SFKQFQFQPFINEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLMD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNKK 118
            ++     V++    I  P+RELA Q+    ++  +     + +             NK 
Sbjct: 63  KVKPTIDEVQIV---ITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKL 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +   V+I TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I   +P   
Sbjct: 120 KHQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+   + +L+NP    +   +  +ETI        +   K    +   
Sbjct: 180 QMLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETI---DNWLISTKGKNSNKIIYQ 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +       I+F N K+ V  +   L+ QG  V  IHG+I  R R +++   +    Q 
Sbjct: 237 LLTIGHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQY 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N +VP+  + +IHR+GRTGR G +G A TL +  D + I 
Sbjct: 297 VVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEAIT 356

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
            IE+L    V +   ++ +    +E  D  +     K+  
Sbjct: 357 QIEQL---GVSFKPKEIKN-GEIVETYDRNRRTKREKSRE 392


>gi|10039335|dbj|BAB13310.1| Vasa-related protein PoVAS1 [Ephydatia fluviatilis]
          Length = 546

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 135/387 (34%), Positives = 203/387 (52%), Gaps = 14/387 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
            F ++         +   GY +PTP+Q   IP++L   D+   AQTG+GKTA+F+LP + 
Sbjct: 94  TFEEVEFFESTKATIGKCGYKRPTPVQKYAIPIILAGRDLMACAQTGSGKTAAFLLPAIT 153

Query: 61  -----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                 +    +A  + P+ LI+ PTREL  Q+ +   K+         +  GG     Q
Sbjct: 154 KLIKEQVPGGSQAETQSPQVLIISPTRELTLQIYNEARKFTHGTMYRPVVAYGGTAVGYQ 213

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
            K+LE G ++L+ TPGR+LD  NRG++ ++ I +L++DEADRMLDMGF P I+ I S   
Sbjct: 214 LKQLEGGCNILVGTPGRLLDFLNRGQVQLDQISVLILDEADRMLDMGFEPEIRKIVSNYS 273

Query: 176 FT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTL+FSAT  +E+Q+++  FL N   + V         I    +       + 
Sbjct: 274 MPETGKRQTLMFSATFPEEIQRIANEFLSNYLFLTVGRVGGATSDITQRIIEVDEFGKR- 332

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                  + S   +   ++F   K+N   L   L ++ F   +IHG+  QR R + L +F
Sbjct: 333 --EKLSEILSATGVDRTLVFVETKRNADFLATYLSQESFPTTSIHGDRFQREREEALRDF 390

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G   ++VA+ +AARGLDIPDV HV N+D+PN  E Y+HRIGRTGR G  G A     K
Sbjct: 391 RSGLAPVLVATSVAARGLDIPDVKHVVNYDLPNNIEEYVHRIGRTGRIGNQGLATAFFHK 450

Query: 352 E-DIKHIDAIEKLIEKKVDWLNGDLSS 377
           E D     A+ K++   +  +   L +
Sbjct: 451 EKDAPLARALIKVLSDALQDVPDFLEA 477


>gi|84392274|ref|ZP_00991701.1| putative ATP-dependent RNA helicase [Vibrio splendidus 12B01]
 gi|84376394|gb|EAP93274.1| putative ATP-dependent RNA helicase [Vibrio splendidus 12B01]
          Length = 428

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 137/389 (35%), Positives = 216/389 (55%), Gaps = 18/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+DLGL   ++  + +  Y +PTPIQ + IP VL   D+   A TG+GKTA+F LP+L 
Sbjct: 9   NFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQ 68

Query: 62  ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113
            + +         +      LIL PTRELA QVAD+ + Y  ++N  +    + GG+   
Sbjct: 69  QIHEDAPLDRRAGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVN 128

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L  G D+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  I  L
Sbjct: 129 TQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKL 188

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  +QTLLFSAT  ++++ ++   L +P  +++ + +++        V    + +    
Sbjct: 189 LPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAH 248

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L+QQ        +  +IF N K +  +L   L K+G      HG+  Q SR +IL +FK 
Sbjct: 249 LIQQHEW-----RQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKS 303

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I +++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G A +L+  ED
Sbjct: 304 GEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHED 363

Query: 354 IKHIDAIEK-----LIEKKVDWLNGDLSS 377
             H   IEK     L  ++++    D  +
Sbjct: 364 YHHFTIIEKKNKIRLEREQIEGFEVDEEA 392


>gi|195502468|ref|XP_002098237.1| GE10265 [Drosophila yakuba]
 gi|194184338|gb|EDW97949.1| GE10265 [Drosophila yakuba]
          Length = 681

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 114/392 (29%), Positives = 200/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L   +S   + AV + G+ + T IQ K++  +L+  D+ G AQTG+GKT +F++P 
Sbjct: 187 SFASLKGAVSEATLRAVKEMGFTEMTEIQAKSLTPLLKGRDLVGAAQTGSGKTLAFLIPA 246

Query: 60  LTILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K R   R     +I+ PTREL+ Q     ++   +++ T  L++GG   + +++K
Sbjct: 247 VELINKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEK 306

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G ++L+ TPGR +    N    L  N++ L+IDE DR+L++GF   ++ I +L+P  
Sbjct: 307 LGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKR 366

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T  ++ +S+  L++         +    T++          S+K  L+  
Sbjct: 367 RQTMLFSATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLF 426

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V             V +IHG   Q  R      F      
Sbjct: 427 TFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESG 486

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
           +++ +D+AARGLDIP V  +  +D P+    YIHR+GRT R  G  G A  L+  E++  
Sbjct: 487 ILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELGF 546

Query: 357 IDAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
           +  + K  +  ++        ++ +   LEK+
Sbjct: 547 LRYL-KAAKVPLNEFEFSWQKIADIQLQLEKL 577


>gi|194043658|ref|XP_001927639.1| PREDICTED: ATP-dependent RNA helicase DDX18-like [Sus scrofa]
          Length = 669

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 121/392 (30%), Positives = 202/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADL--GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L   ++   + A+ + G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 177 SFASLTDLVNENTLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPA 236

Query: 60  LTILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K R   R    + IL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 237 VELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK 296

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 297 LANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTR 356

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T++          S+K  LL  
Sbjct: 357 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLF 416

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +  K+V      L      V AIHG   Q  R      F      
Sbjct: 417 TFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSG 476

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
           +++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 477 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELG 535

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + ++    +S +   LEK+
Sbjct: 536 FLRYLKQSKVPLSEFEFSWSKISDIQSQLEKL 567


>gi|194911317|ref|XP_001982328.1| GG11103 [Drosophila erecta]
 gi|190656966|gb|EDV54198.1| GG11103 [Drosophila erecta]
          Length = 683

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 114/392 (29%), Positives = 200/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L   +S   + AV + G+ + T IQ K++  +L+  D+ G AQTG+GKT +F++P 
Sbjct: 189 SFASLKGAVSEATLRAVKEMGFTEMTEIQAKSLTPLLKGRDLVGAAQTGSGKTLAFLIPA 248

Query: 60  LTILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K R   R     +I+ PTREL+ Q     ++   +++ T  L++GG   + +++K
Sbjct: 249 VELINKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEK 308

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G ++L+ TPGR +    N    L  N++ L+IDE DR+L++GF   ++ I +L+P  
Sbjct: 309 LGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKR 368

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T  ++ +S+  L++         +    T++          S+K  L+  
Sbjct: 369 RQTMLFSATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLF 428

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V             V +IHG   Q  R      F      
Sbjct: 429 TFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESG 488

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
           +++ +D+AARGLDIP V  +  +D P+    YIHR+GRT R  G  G A  L+  E++  
Sbjct: 489 ILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELGF 548

Query: 357 IDAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
           +  + K  +  ++        ++ +   LEK+
Sbjct: 549 LRYL-KAAKVPLNEFEFSWQKIADIQLQLEKL 579


>gi|301777320|ref|XP_002924074.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
           [Ailuropoda melanoleuca]
          Length = 545

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 108/493 (21%), Positives = 196/493 (39%), Gaps = 41/493 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F  +GL P+++ A+ D G+ +PT IQ K IPL L+  D+   A+TG+GKTA++ +P    
Sbjct: 9   FEHMGLDPRLLQAIADLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPALQL 68

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQ 115
           +L     G A  +  R L+L PT+ELA Q     ++        + +            +
Sbjct: 69  LLHRKATGPAVEQAVRGLVLVPTKELARQARSMIQQLAAYCARDIRVADVSAAEDSASQR 128

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              +E+   V+      +        +L +++E+LV+DEAD +   GF   ++++   +P
Sbjct: 129 AVLMEKPDMVVGTPSRVLNHLQQDSLVLRDSLELLVLDEADLLFSFGFEEELKSLLCHLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q  L SAT  +++Q + E  L NP  +++             F         K  LL
Sbjct: 189 RIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLRQFQVVCQTEEDKFLLL 248

Query: 236 QQLLQSQDTMKNGIIFCNQ---------------------------KKNVVNLCHSLEKQ 268
             LL+        ++F N                                  +    +  
Sbjct: 249 YALLKLSLVRGKSLLFVNTLDRSYRLRLFLEQFSIPTCVLNGELPLCSRCHIISQFNQGF 308

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
              V A    +                 +        ARG+D   V  V NFD+P   E 
Sbjct: 309 YDCVIATDAEVLGAPVKGKRRGRGSKGDRASDPEAGVARGIDFHHVSAVLNFDLPPTPEA 368

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHR GRT RA   G   T V   +  H+  IE+L+  + +     L      +E+I+  
Sbjct: 369 YIHRAGRTARANNPGMVLTFVLPTEQSHLHTIEELL--RGENGAPVLLPYQFRMEEIEGF 426

Query: 389 QHNHARKNNPIPQKSTGFDR----RKKNYSSQKSHIPLKESEK-ISKLQQDIQENDADSL 443
           ++        + +++    R    +++   S++     +++ + +  L+ D+  + A   
Sbjct: 427 RYRCRDAMRSVTKQAIREARLKEIKEELLHSERLKTYFEDNPRDLQLLRHDLPLHPAVVK 486

Query: 444 GFRGNMPAFMLPK 456
              G++P +++P 
Sbjct: 487 PHLGHVPDYLVPP 499


>gi|126325503|ref|XP_001378186.1| PREDICTED: similar to helicase like protein 2 [Monodelphis
           domestica]
          Length = 829

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 131/396 (33%), Positives = 207/396 (52%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 347 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 406

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 407 QIYTDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 466

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 467 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 526

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 527 IRRIVEQDTMPQKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 586

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 587 WVEEADKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 644

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 645 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 704

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +     +I     +  L+ +    +   L S+
Sbjct: 705 GLATSFFNDRNINITKDLLDLLVEAKQEVPSWLESM 740


>gi|291407356|ref|XP_002719895.1| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3
           [Oryctolagus cuniculus]
          Length = 661

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 136/428 (31%), Positives = 216/428 (50%), Gaps = 29/428 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 241 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 300

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 301 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 360

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 361 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 420

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 421 WVEESDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH-NHARKNNPIPQ 401
           G A +   + ++     +       +D L      +   LE +    H   + +     +
Sbjct: 539 GLATSFFNERNVNITKDL-------LDLLVEAKQEVPSWLENMAYEHHYKGSSRGRSKSR 591

Query: 402 KSTGFDRR 409
            S GF  R
Sbjct: 592 FSGGFGAR 599


>gi|281347447|gb|EFB23031.1| hypothetical protein PANDA_001323 [Ailuropoda melanoleuca]
          Length = 613

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 129/396 (32%), Positives = 208/396 (52%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 132 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 191

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 192 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 251

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 252 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 311

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 312 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 371

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 372 WVEESDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 429

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ ++ARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 430 DREEALHQFRSGKSPILVATAVSARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 489

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   + +I     +  L+ +    +   L ++
Sbjct: 490 GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 525


>gi|54294961|ref|YP_127376.1| ATP-dependent RNA helicase DbpA [Legionella pneumophila str. Lens]
 gi|53754793|emb|CAH16280.1| hypothetical protein lpl2040 [Legionella pneumophila str. Lens]
          Length = 468

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 140/407 (34%), Positives = 225/407 (55%), Gaps = 16/407 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L  +++ ++  + Y   TPIQ++++P++L+  D+   A+TG+GKTA+F L +L
Sbjct: 11  LSFSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDLIAQAKTGSGKTAAFALSLL 70

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL-IGGIPFEAQNKKL 119
             L+     V+    L+L PTRELA QV+    +          +   GGIP + Q   L
Sbjct: 71  NNLKISFFAVQ---ALVLCPTRELAEQVSQAIRRLACFMPNVKIINLSGGIPMQPQLDSL 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA +++ TPGRIL H     L ++ ++ L++DEADRMLDMGF   I+NI S+ P  RQ
Sbjct: 128 RHGAHIIVGTPGRILKHLKNTSLDLSQVKALILDEADRMLDMGFFDDIKNIISVCPKQRQ 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +E++++S+ F+++PK + V TP    +  +H +  +          L + L
Sbjct: 188 TLLFSATYPEEIKRLSKQFMKDPKEVHVVTPPEEIDIEQHFYEVSRHAQK---FPLLKSL 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + +IFCN K+  + +   L  +GFS  A++G+++Q  R   +  F   +  ++
Sbjct: 245 LLHYQPVSVLIFCNTKQQTIEVTDQLINEGFSAIALNGDMEQIERDLAVLRFANKSCSIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++  V NFD+    + +IHRIGRTGRAG  G A ++V   D + I A
Sbjct: 305 VATDVAARGLDIKELSAVINFDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPADAQRICA 364

Query: 360 IEKLIEKKVDWLNGDL------SSLNPPLEKIDIAQHNHARKNNPIP 400
           IE      + W N +       + L P +  + IA     +K+   P
Sbjct: 365 IEDNYPHPIHWGNINELENHNTARLVPEMVTLCIA---SGKKDKIRP 408


>gi|48146237|emb|CAG33341.1| DDX18 [Homo sapiens]
          Length = 610

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 122/392 (31%), Positives = 200/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADL-GL-SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L  L +   + A+ + G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 118 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPA 177

Query: 60  LTILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K R   R    + IL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 178 VELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK 237

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 238 LGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTR 297

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T++          S+K  LL  
Sbjct: 298 RQTMLFSATQTRKVEDLARISLKKGPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLF 357

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 358 TFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSG 417

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
            ++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 418 TLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELG 476

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + D+    +S +   LEK+
Sbjct: 477 FLRYLKQSKVPLSEFDFSWSKISDIQSQLEKL 508


>gi|322392273|ref|ZP_08065734.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           peroris ATCC 700780]
 gi|321144808|gb|EFX40208.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           peroris ATCC 700780]
          Length = 407

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 121/412 (29%), Positives = 192/412 (46%), Gaps = 20/412 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTQFKFKKYIEEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V++    I  P+RELA Q+     +   +  + + +       +   +  +
Sbjct: 61  QQLDEESDSVQVV---ITAPSRELATQIYQAARQIAGHSEVEIRVANYVGGTDKARQIDK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAQTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +          
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYEL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 237 --TQVMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL-IEKKVDWLN-GDLSSL---------NPPLEKIDIAQHNHARKNNP 398
             +EKL I+     +  G+                 EK+DI      +K   
Sbjct: 355 RELEKLGIKFTPKVVKDGEFQDTYDRDRRANREKKQEKLDIEMIGLVKKKRK 406


>gi|71656836|ref|XP_816959.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70882121|gb|EAN95108.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 617

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 126/381 (33%), Positives = 199/381 (52%), Gaps = 7/381 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--ML 60
           F+DL     +  + +D GY +PTPIQ    P++L   D+ G+A+TG+GKT +F++P  + 
Sbjct: 72  FSDLVAPDSIHQSFIDLGYKEPTPIQSIAWPILLNSRDLVGVAKTGSGKTMAFMVPAALH 131

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
            + +        P  L+L PTRELA Q+ +   K  +         +  G P   Q + L
Sbjct: 132 IMAQPPVRPGDGPIALVLAPTRELAVQIEEETRKVLRRIPTIATTCLYGGAPKGPQIRTL 191

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  V I TPGR++D        +  +  LV+DEADRMLDMGF   I+ I S +   RQ
Sbjct: 192 RAGVHVAIATPGRLIDLLEMRATNLLRVTYLVLDEADRMLDMGFEIQIRKICSQIRSDRQ 251

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT   E++ ++ +F ++  R+ V +    A       V    +Y K+     + +
Sbjct: 252 TLMFSATWPQEIRNLAASFQRDFIRVHVGSEDLVANNDVCQHVIVVEEYDKQR--RLEEI 309

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA-IHGNIDQRSRMKILSNFKEGTIQL 298
             +   +  +IF   K+   +L  SL +        IHG+ +Q  R  +L  F+     +
Sbjct: 310 LQKLGRQRVLIFVKTKRTADSLHGSLRRILGGAVMAIHGDKEQSQRDYVLDRFRRDDRSV 369

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED-IKHI 357
           +VA+D+AARGLDI ++  V NFD+P   E+Y+HRIGRTGRAG+ G A++ V+  D  K I
Sbjct: 370 LVATDVAARGLDIKNLDVVINFDMPTNIEDYVHRIGRTGRAGQRGDAYSFVSGADPSKTI 429

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             +  L+ +    +  +L  +
Sbjct: 430 RDLVDLLRRANQEVPPELYEM 450


>gi|32352202|dbj|BAC78594.1| RNA helicase [Oryza sativa Japonica Group]
          Length = 408

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 121/374 (32%), Positives = 193/374 (51%), Gaps = 6/374 (1%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA----RVRMPR 74
            G+ +P+PIQ    P +L   D  GIA TG+GKT +F +P L  + +       +  +PR
Sbjct: 6   KGFERPSPIQAYAWPYLLDGRDFIGIAATGSGKTIAFGVPALMHVRRKMGEKSAKKGVPR 65

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTRELA Q+AD   + G    ++   L GG     Q   L+ G D++I TPGR+ 
Sbjct: 66  VLVLSPTRELAQQIADVLCEAGAPCGISSVCLYGGTSKGPQISALKSGVDIVIGTPGRMK 125

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D    G   +N++  +V+DEADRMLDMGF P ++ I S     RQT++FSAT    + ++
Sbjct: 126 DLIEMGICRLNDVSFVVLDEADRMLDMGFEPEVRAILSQTASVRQTVMFSATWPPAVHQL 185

Query: 195 SENFLQNPKRI--EVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           ++ F+          +   +    +         +      +       +      ++F 
Sbjct: 186 AQEFMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRSRDSRLVALLDKYHKAQRNRVLVFV 245

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             K+    +   L+++G+S  ++HG+  Q  R K LS FKEG+  LM+A+D+A+RGLDIP
Sbjct: 246 LYKREATRVETMLQRRGWSAVSVHGDKAQHDRTKALSLFKEGSCPLMIATDVASRGLDIP 305

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
           DV  V N+  P   E+Y+HRIGRTGRAG+ G A T   +E+      +  ++ +    + 
Sbjct: 306 DVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTFFTQENKGLAGELVNVLREAGQVVP 365

Query: 373 GDLSSLNPPLEKID 386
             L+     ++K +
Sbjct: 366 PALTKFGTHVKKKE 379


>gi|254381813|ref|ZP_04997176.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
 gi|194340721|gb|EDX21687.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
          Length = 518

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 142/428 (33%), Positives = 223/428 (52%), Gaps = 21/428 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+ P+   A+   G V P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L 
Sbjct: 35  TFRDLGIFPETAEALEAVGIVSPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLE 94

Query: 62  ILE----------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
            +                   P+ L++ PTREL  QV ++    GK  N+ V  + GG  
Sbjct: 95  RVIVPADVEAGRATPDQLTDSPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRA 154

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q + L++G DV++ TPGR+LD   + KL ++ ++ LV+DEAD MLD+GF+P ++ I 
Sbjct: 155 YEPQVEALKKGVDVIVGTPGRLLDLAGQKKLDLSRVKALVLDEADEMLDLGFLPDVEKII 214

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           + +P  RQT+LFSATM   +  ++  ++  P  I   +P     T+ +     +  ++  
Sbjct: 215 NYLPPKRQTMLFSATMPGAVIGLARRYMTQPTHIRATSPEGEGVTVANIKQHVFRAHNMD 274

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L   +   +     +IFC  K+   ++   LEK+GF+  A+HG++ Q +R + L  F
Sbjct: 275 KPELVSRILQAEGRGLAMIFCRTKRTAADIAEQLEKRGFASGAVHGDLGQGAREQALRAF 334

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + ++HR+GRTGRAG  G A TLV  
Sbjct: 335 RNGKVDVLVCTDVAARGIDVEGVTHVINYQAPEDEKTFLHRVGRTGRAGNKGIAVTLVDW 394

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           +DI     I K +E             + P+E    + H     N P   K     R ++
Sbjct: 395 DDIPRWQLINKALEL----------DFHDPVETYSTSPHLFEEMNIPAGTKGI-LPRAER 443

Query: 412 NYSSQKSH 419
             +  K+ 
Sbjct: 444 TRAGLKAE 451


>gi|254380609|ref|ZP_04995975.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
 gi|194339520|gb|EDX20486.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
          Length = 504

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 132/430 (30%), Positives = 208/430 (48%), Gaps = 10/430 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +  +++  +   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 78  FADLDMPAQLLTTLTREGMATPFPIQAATLPNTLAGRDVLGRGRTGSGKTLAFGLALLAR 137

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                A    P  LIL PTRELA QV      Y +   L +A ++GG+P   Q   L  G
Sbjct: 138 TAGQSAESGQPLALILVPTRELAQQVTAALTPYARAVKLRLATVVGGMPIHRQAGALRAG 197

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D  +RG   +N + + V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 198 AEVVVATPGRLKDLIDRGDCRLNQVAVTVLDEADQMADMGFMPQVTALLDQVRPEGQRML 257

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+       T+EH  +  +          +   +  
Sbjct: 258 FSATLDRNVDLLVRRYLTDPVVHSVDPSQGAVTTMEHHVLHVHGADK-----HRTTTEIA 312

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F + K  V  L   L   G    A+HG   Q  R + L+ FK G + ++VA+
Sbjct: 313 ARDGRVIMFLDTKHAVDRLTQDLLDSGVRAAALHGGKSQPQRTRTLARFKTGHVTVLVAT 372

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           ++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV     + +  + +
Sbjct: 373 NVAARGIHVDNLDLVVNVDPPTDPKDYLHRGGRTARAGESGSVVTLVTPNQRREMARLMQ 432

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPL 422
                +  L   + S +  L +I  AQ   A    P+   +   +R K++ +S+    P+
Sbjct: 433 AAG--ITPLTTQVRSGDEALNRITGAQ---APSGIPVTITAPVSERPKRSTASRGRRGPV 487

Query: 423 KESEKISKLQ 432
             + + S  Q
Sbjct: 488 SAARRASLRQ 497


>gi|148236143|ref|NP_001082017.1| ATP-dependent RNA helicase DDX25 [Xenopus laevis]
 gi|82247153|sp|Q9DGP9|DDX25_XENLA RecName: Full=ATP-dependent RNA helicase DDX25; AltName: Full=DEAD
           box protein 25; AltName: Full=RNA helicase DEADSouth;
           AltName: Full=Xcat3
 gi|9801987|gb|AAF99574.1|AF190623_1 DEADSouth RNA helicase [Xenopus laevis]
 gi|171846435|gb|AAI61711.1| DEADSouth RNA helicase [Xenopus laevis]
 gi|213624894|gb|AAI69365.1| DEADSouth RNA helicase [Xenopus laevis]
          Length = 483

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 99/388 (25%), Positives = 171/388 (44%), Gaps = 14/388 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L  +++  +   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 98  SFEELHLKNELLRGIYAMGFNRPSKIQENALPMMLADPPQNLIAQSQSGTGKTAAFVLAM 157

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++      + P+ + L PT ELA Q     E+ GK       +         +  +L
Sbjct: 158 LSRVDAN---KKYPQCICLSPTFELALQTGKVVEEMGKFCAGIEVIYALRGNRPGKGSRL 214

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E    +             R   + N    ++ +    +   G   +   +   +P + Q
Sbjct: 215 EAQIVIGTPGTVLDWCFKLRLITVENISVFVLDEADVMINVQGHSDHSVRVKRSMPKSCQ 274

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D +   +E  + +P  I++     T + I+  +     +  K  AL     
Sbjct: 275 MLLFSATFEDSVWAFAERIVPDPNIIKLKKEELTLKNIQQFYDQCENKEQKYSALCNL-- 332

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   I+FC  +K    L   L   G  V  + G +    R  ++  F+EG  +++
Sbjct: 333 YGVITIAQAIVFCQTRKIASWLSQKLSDDGHQVALLSGELPVYDRADMIQRFREGREKVL 392

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRA------ENYIHRIGRTGRAGRHGKAFTLVAKED 353
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A +L+    
Sbjct: 393 VTTNVCARGIDVEQVSIVVNFDLPVNVDGSVDFETYLHRIGRTGRFGKKGIAVSLIENFF 452

Query: 354 IKHIDAIEKLIEKKVDWLN-GDLSSLNP 380
           +  +  IE     K+  LN  D+  +  
Sbjct: 453 VYMLKEIEDHFNTKITKLNSMDMDEMGK 480


>gi|31981163|ref|NP_080136.2| ATP-dependent RNA helicase DDX18 [Mus musculus]
 gi|56404614|sp|Q8K363|DDX18_MOUSE RecName: Full=ATP-dependent RNA helicase DDX18; AltName: Full=DEAD
           box protein 18
 gi|20380248|gb|AAH28246.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Mus musculus]
 gi|75517578|gb|AAI03777.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Mus musculus]
 gi|148707837|gb|EDL39784.1| mCG1040626 [Mus musculus]
 gi|187954459|gb|AAI41231.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Mus musculus]
 gi|187954929|gb|AAI41232.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Mus musculus]
          Length = 660

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 120/392 (30%), Positives = 200/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP- 58
            FA L   ++   + A+ + G+ + T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 168 SFASLSNLVNENTLKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPV 227

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  I++           LIL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 228 IELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQK 287

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 288 LLNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPAR 347

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T++          S+K  LL  
Sbjct: 348 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLF 407

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 408 TFLKKNRKKKVMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSG 467

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
           +++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 468 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELG 526

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + D+    +S +   LEK+
Sbjct: 527 FLRYLKQSKVPLNQFDFSWSKVSDIQSQLEKL 558


>gi|13399860|pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
           Hyperthermophile Methanococcus Jannaschii
 gi|13399861|pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
           Hyperthermophile Methanococcus Jannaschii
          Length = 367

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 125/363 (34%), Positives = 201/363 (55%), Gaps = 14/363 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
           +F +L LS  ++ A+ + G+ KPT IQ K IPL L    ++   A+TG+GKTASF +P++
Sbjct: 7   NFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ++            +IL PTRELA QVAD  E    N NL +A + GG     Q  K  
Sbjct: 67  ELVN----ENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQI-KAL 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           + A++++ TPGRILDH NRG L + N++  ++DEAD  L+ GFI  ++ I +     ++ 
Sbjct: 122 KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEXLNXGFIKDVEKILNACNKDKRI 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT   E+  +++ +            S     I      +Y + ++          
Sbjct: 182 LLFSATXPREILNLAKKY--------XGDYSFIKAKINANIEQSYVEVNENERFEALCRL 233

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++    G++FC  K++   L   L   GF   AIHG++ Q  R K++  FK+  I++++
Sbjct: 234 LKNKEFYGLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILI 293

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ +RG+D+ D+  V N+ +P   E+Y HRIGRTGRAG+ GKA +++ + + K +  I
Sbjct: 294 ATDVXSRGIDVNDLNCVINYHLPQNPESYXHRIGRTGRAGKKGKAISIINRREYKKLRYI 353

Query: 361 EKL 363
           E+ 
Sbjct: 354 ERA 356


>gi|330873852|gb|EGH08001.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963764|gb|EGH64024.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 459

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 201/378 (53%), Gaps = 8/378 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++ +    L +  G+ F  Q   LE 
Sbjct: 66  I---NPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQTPQRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F     R                    Y    ++       +  
Sbjct: 183 LFSATYPVGIKQLSSKF----MRDPQTVKVEALHADSQIEQIFYEISPEQRLEAVVKVLG 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 239 HFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 299 TDVAARGLDIDALDMVLNVELARDSEIHIHRVGRTGRAGETGIAVSLVAPSESQRARAIE 358

Query: 362 KLIEKKVDWLNGDLSSLN 379
           +L +  ++W   D  S+ 
Sbjct: 359 ELQKAPLNWQQYDNLSIK 376


>gi|322373643|ref|ZP_08048179.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C150]
 gi|321278685|gb|EFX55754.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C150]
          Length = 447

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 115/366 (31%), Positives = 181/366 (49%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ +  + +PTP+Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDFNFKTFIQEALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L      V++    I  P+RELA Q+    ++  K+    + ++      + Q +  +
Sbjct: 61  EKLSPESGDVQVV---ITAPSRELATQIYQATKQIAKHSATEIRVVNYVGGTDKQRQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++     V+DEAD  +DMGF+  +  I + +P  
Sbjct: 118 LKVAQPHIVIGTPGRIYDLIKSGDLAIHKAHTFVVDEADMTMDMGFLDTVDKIAASLPKE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEQIKTSTVIADTI---DNWLVSTKGRNKNEQIL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K+   +L   L   G  V  IHG I  R R +I++  K+   +
Sbjct: 235 EMLKGMQPYLAMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 RELEKM 360


>gi|312376779|gb|EFR23772.1| hypothetical protein AND_12284 [Anopheles darlingi]
          Length = 1243

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 118/378 (31%), Positives = 194/378 (51%), Gaps = 9/378 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F + G    ++  +   G+++PT IQ     + +   D+ GIA+TG+GKT +++LP L
Sbjct: 80  LHFQESGFPQFMLDEIARQGFLEPTFIQAVGWSIAMSGRDMVGIAKTGSGKTLAYILPAL 139

Query: 61  TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +       R   P  L+L PTRELA Q+    + +G+   +    + GG     Q   
Sbjct: 140 VHISNQPRLARGDGPIALVLAPTRELAQQIKQVSDDFGRRMGVHNTCVFGGAAKYPQEND 199

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG +++I TPGR++D   R    +     LV+DEADRMLDMGF P I+ I S +   R
Sbjct: 200 LRRGVEIVIATPGRLIDFLERETTNLRRCTYLVLDEADRMLDMGFEPQIRKIISQIRPDR 259

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQ 237
           Q L++SAT   E++K++E FL++  +I + + +  A       +    +Y K+    +  
Sbjct: 260 QVLMWSATWPKEIRKLAEEFLRDYIQINIGSLNLAANENILQVIECCEEYEKENRLFMLL 319

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              S       IIF   K+ V  + + + +QG+    IHG+  Q+ R  +L+NF+     
Sbjct: 320 EKISSQPDNKAIIFVETKRKVDKIVNIIRRQGWRADGIHGDKSQKDRDYVLNNFRRSPNG 379

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L+VA+D+        DV  V NFD PN  E+Y+HRIGRTGR+   G ++T     +    
Sbjct: 380 LLVATDM------STDVKFVINFDFPNNTEDYVHRIGRTGRSTNKGTSYTFFTPANASKA 433

Query: 358 DAIEKLIEKKVDWLNGDL 375
             +  +++    ++N +L
Sbjct: 434 SDLIAVLQDANQYINPEL 451


>gi|154417727|ref|XP_001581883.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121916114|gb|EAY20897.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 441

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 126/437 (28%), Positives = 204/437 (46%), Gaps = 35/437 (8%)

Query: 1   MD--FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           M+  F  LG    +     + G  KPT +Q   +  ++  H+   I+QTGTGKTA+F LP
Sbjct: 1   MNNPFTSLGCPEFIYQTCKEIGISKPTAVQQACVKQIITGHNCIVISQTGTGKTAAFALP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +++ L K          L++ PTRELA Q+   F+ +G+  N  +  +IGG+    Q   
Sbjct: 61  IISTLSK---DPYGIYALVISPTRELAQQICQQFKIFGRGMNADICPIIGGLAITDQASA 117

Query: 119 LERGADVLICTPGRILDH-----FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           LE+   +++ TPGRIL H         +   +N++ LV+DE DR+   G+   +  I   
Sbjct: 118 LEKNPHIVVATPGRILHHLRSASKGNTRFSFDNLQYLVLDEVDRLFKDGYWDDVLEIIKY 177

Query: 174 VPFTRQTLLFSATMTDELQ-------------------KVSENFLQNPKRIEVNTPSSTA 214
           +P  RQTL FSAT +D++                      S             T     
Sbjct: 178 LPEKRQTLCFSATKSDQVDLLTIMTKPPSTSSCPLPSVGKSWFSDDKLTFYWEPTDDLKP 237

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           +      +           ++ Q L   D  K  I+F + K+    +   L    +    
Sbjct: 238 KIEHVKVLVQDEGREVYLMIIIQKLMEADLYKQVIVFASTKEAAQTITLILRNFSYKTAV 297

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +H ++ +  R+K L  F+ G  +++VA+D+AARGLDIP V +V +F+ P  A  Y+HR G
Sbjct: 298 MHSDMQESERLKELEEFRAGRQRILVATDVAARGLDIPFVDNVIHFNPPQNAATYVHRAG 357

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           RTGRAGR G++   V+  + K    IEK I ++   L  + S +    EK+++     A+
Sbjct: 358 RTGRAGREGRSILFVSGREKKIEQEIEKEIGQQFTELKVEKSEMK---EKMNVF---WAK 411

Query: 395 KNNPIPQKSTGFDRRKK 411
           K+  I    + F +R +
Sbjct: 412 KDAKIAMSQSDFGKRDE 428


>gi|154420635|ref|XP_001583332.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121917573|gb|EAY22346.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 449

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 115/364 (31%), Positives = 195/364 (53%), Gaps = 4/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DL L+  ++ A+ +  +  PT +Q +TIP +L   D+C  A TG+GK+ +F++P++
Sbjct: 7   ISFLDLKLAKPIIRALNENNFTNPTKVQAETIPKILSGQDICATAITGSGKSMAFLIPIV 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L      +  P+ LI+ PTRELA Q+    +    +  +T  L+IGG+  E Q + L 
Sbjct: 67  QKLLT-FRGLPGPKALIMSPTRELAQQLKAVCDMLAAHCAITSTLVIGGVSDEEQRELLT 125

Query: 121 RGADVLICTPGRILDHFNRGKL-LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D++I TPGR +D     K+  + +++  V+DEADR+L  GF   +  I S +P   Q
Sbjct: 126 PAPDIIIGTPGRFIDSIFNAKVLKLEHLQFFVLDEADRLLGKGFESQLNTIVSQLPEKHQ 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLF+AT+ D++ K++    +         P                +  ++   L  L 
Sbjct: 186 TLLFTATLNDQVAKLATKIQKKSSEKISINPYMELNPNITQMFIKTKKEERRLPYLVALC 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++       ++F   K    ++    +  G +   +H ++ Q +R + +  F+E  +Q +
Sbjct: 246 RNMCK-DKTLVFFPTKALAHHVFLLFKNLGIASAELHADLSQTARNEAIEQFRESKVQYL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL-VAKEDIKHID 358
           +ASDLAARG+DIPD+ +V NF +PN  E YIHR GRTGRAG+ G A ++ V  E+ + + 
Sbjct: 305 LASDLAARGIDIPDIEYVINFTIPNELERYIHRTGRTGRAGKKGTAISMYVTPEEKRVMK 364

Query: 359 AIEK 362
            ++K
Sbjct: 365 KMQK 368


>gi|21312650|ref|NP_080814.1| probable ATP-dependent RNA helicase DDX56 [Mus musculus]
 gi|20139152|sp|Q9D0R4|DDX56_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX56; AltName:
           Full=ATP-dependent 61 kDa nucleolar RNA helicase;
           AltName: Full=DEAD box protein 56
 gi|12847068|dbj|BAB27426.1| unnamed protein product [Mus musculus]
 gi|17390686|gb|AAH18291.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Mus musculus]
 gi|26345784|dbj|BAC36543.1| unnamed protein product [Mus musculus]
 gi|26346376|dbj|BAC36839.1| unnamed protein product [Mus musculus]
 gi|56206135|emb|CAI24398.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Mus musculus]
 gi|74143954|dbj|BAE41278.1| unnamed protein product [Mus musculus]
 gi|74204609|dbj|BAE35375.1| unnamed protein product [Mus musculus]
 gi|74216851|dbj|BAE26549.1| unnamed protein product [Mus musculus]
 gi|148708631|gb|EDL40578.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Mus musculus]
          Length = 546

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 120/492 (24%), Positives = 206/492 (41%), Gaps = 41/492 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F  +GL P+++ AV D G+ +PT IQ K IPL L+  D+   A+TG+GKTA++ +PM   
Sbjct: 9   FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQS 68

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQ 115
            L     G    +  R L+L PT+ELA Q     ++        V +            +
Sbjct: 69  LLHKKATGPVMEQAVRGLVLVPTKELARQAQAMIQQLAAYCARDVRVANVSAAEDSASQR 128

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              +E+   V+      +         L +++E+LV+DEAD +   GF   ++++   +P
Sbjct: 129 AVLMEKPDVVVGTPSRVLSHLQQNTLKLRDSLELLVVDEADLLFSFGFEDELKSLLCHLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q  L SAT  +++Q + E  L NP  +++             F         K  LL
Sbjct: 189 RIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL+        ++F N  +    L   LE+     C ++G +  RSR  I+S F +G 
Sbjct: 249 YALLKLSLIRGKALLFVNTLERGYRLRLFLEQFSIPSCVLNGELPLRSRCHIISQFNQGL 308

Query: 296 IQL---------------------------MVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
                                                ARG+D   V  V NFD+P  AE 
Sbjct: 309 YDCVIATDAEILGPQVKGKRRGRGSKGNKASDPESGVARGIDFHHVSAVLNFDLPPTAEA 368

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           Y+HR GRT RA   G   T V   +   +  IE L+  + +     L      +E+I+  
Sbjct: 369 YVHRAGRTARANNPGIVLTFVLPAEQPFLGKIEDLLSGEGEA--PILLPYQFQMEEIESF 426

Query: 389 QHNHARKNNPIPQKSTGFDR----RKKNYSSQKSHIPLKESEK-ISKLQQDIQENDADSL 443
           ++        + +++    R    +++   S+K     +++ + +  L+ D+  + A   
Sbjct: 427 RYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVK 486

Query: 444 GFRGNMPAFMLP 455
              G++P +++P
Sbjct: 487 PHLGHVPDYLVP 498


>gi|293605139|ref|ZP_06687530.1| ATP-independent RNA helicase DbpA [Achromobacter piechaudii ATCC
           43553]
 gi|292816463|gb|EFF75553.1| ATP-independent RNA helicase DbpA [Achromobacter piechaudii ATCC
           43553]
          Length = 462

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 136/383 (35%), Positives = 206/383 (53%), Gaps = 10/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P ++  +   G+ + TPIQ +++PL+L+  D+   A+TG+GKTA+F L +L  
Sbjct: 6   FSTLPLLPALLDNLQSLGFEQMTPIQAQSLPLILEGRDIIAQAKTGSGKTAAFGLGVLQK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+  R     P+ L++ PTRELA QVA    +  +       L +  G P   Q + L R
Sbjct: 66  LDPAR---LAPQALLVCPTRELADQVAQELRRLARLIPNVKILTLCGGAPARPQAESLAR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI DH  RG L ++ +  LV+DEADRM+DMGF   I  I S  P  RQTL
Sbjct: 123 GAHLVVGTPGRIQDHLERGSLDLSGLTTLVLDEADRMVDMGFYDDIVAIASHCPAKRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D ++K+S  F     R                    Y    K        L +
Sbjct: 183 LFSATYPDNIRKLSARF----LRNPAEVKVEAQHDASRIEQIFYEIDEKDRLDAVARLLA 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FCN K    +L   L+  G S  A++G+++QR R +IL  F   +  ++VA
Sbjct: 239 HFRPVSTLAFCNTKIRSHDLVERLQADGISAQALNGDLEQRERDEILIQFANQSCAVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++G V N DV    E ++HRIGR+GR  + G A +L + ++++  + +E
Sbjct: 299 TDVAARGLDIQNLGAVINVDVTKDTEVHVHRIGRSGRGDQKGLALSLCSPDEMRWANLVE 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384
           +     + W  GD+ SL P  ++
Sbjct: 359 QYQGTPLKW--GDIKSLKPKADR 379


>gi|242022035|ref|XP_002431447.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212516735|gb|EEB18709.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 636

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 118/392 (30%), Positives = 203/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADL--GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            F+ L   +    + A++D G+   T IQ K+IP +L+  D+ G A+TG+GKT +F++P+
Sbjct: 142 KFSSLEGKVCENTLKAIVDMGFTTMTEIQAKSIPPLLEGRDLVGSAKTGSGKTLAFLIPV 201

Query: 60  LTILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K +   R     +I+ PTREL+ Q     ++  K +  T  L+IGG   +A+ +K
Sbjct: 202 VELIYKLKFLPRNGVGAIIISPTRELSMQTFGVLKELMKYHYHTYGLVIGGANRKAEAEK 261

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G ++L+ TPGR +    N    L  N++ LVIDEADR+LD+GF   ++ I +L+P  
Sbjct: 262 LSKGINILVATPGRLLDHLQNTPGFLFKNLQCLVIDEADRILDIGFEEELKQIINLLPKR 321

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T + + +++  L+               T+E          S+K  LL  
Sbjct: 322 RQTMLFSATTTAKTENLTKLALKKEPVYVGIDDRKEKATVEGLEQGYVVCPSEKRFLLLF 381

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V  IHG   Q  R  +   F      
Sbjct: 382 TFLKKNKKKKVMVFFSSCLSVKFHHELLNYIDLPVMCIHGKQKQAKRTTVFFQFCNAESG 441

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
           +++ +D+AARGLDIP V  +  +D P+  + YIHR+GRT R  G  G A  ++  E++  
Sbjct: 442 ILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGF 501

Query: 357 IDAIEKL---IEKKVDWLNGDLSSLNPPLEKI 385
           +  +++    + +  ++    ++ +   LEK+
Sbjct: 502 LRYLKQARVPLNE-FEFSWSKIADIQVQLEKL 532


>gi|209876744|ref|XP_002139814.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209555420|gb|EEA05465.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 942

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 129/472 (27%), Positives = 216/472 (45%), Gaps = 36/472 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+  GL   +   +     +KP PIQ+++IP+++   D+ GIA+TG+GKT ++VLP++
Sbjct: 209 LKFSQCGLPSGINKYLQSKDIIKPFPIQMQSIPILMSGKDMIGIAETGSGKTLAYVLPLI 268

Query: 61  TILEKGRARVRMPRTL-----------------ILEPTRELAAQVADNFEKYGKNYNLTV 103
             +   ++       +                 I+ PTRELA QV    +       L  
Sbjct: 269 RHVIIQKSNNYPFNKMERSNTTINTNIHYVTALIIVPTRELALQVYKQTKILSNIVKLNS 328

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILD---HFNRGKLLMNNIEILVIDEADRMLD 160
            ++ GG     Q  KL  G D+++CTPGR +D      +   +   I  +VIDE DR+LD
Sbjct: 329 TVICGGFSISNQLNKLRSGCDIVVCTPGRFIDIISLNYKRVSVFQYISYIVIDEGDRLLD 388

Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
           MGF P + NI S++   RQ  +FSAT    ++++  N L NP ++ V         ++  
Sbjct: 389 MGFAPQLTNILSIIRPDRQCCIFSATFPPVVEQLVNNLLTNPIQVIVGQKGQLTSNVKQH 448

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
                    K    L QLL         +IFCN++  V  L   L   G+    +H   D
Sbjct: 449 IELWKDDQEK-FYRLLQLLGEWSEFGLIVIFCNRQVEVDELYAQLLPYGYKCFTLHSGQD 507

Query: 281 QRSRMKILSNFKEGT-------IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
              R   L  F +           +++A+ + +RGL I ++  V N+  P+  E+YIHR+
Sbjct: 508 NNDRHSNLMQFSKSNKVEISSGNNILIATSIFSRGLHIDNILVVINYGPPHHIEDYIHRV 567

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           GRTGRAG+ G +FTL+   +I     + +L +K     + D+  ++  +  ID   +   
Sbjct: 568 GRTGRAGKFGTSFTLLLSSEISQCFDLIELTQK----YDNDIVIIDQKV--IDSYNNEKI 621

Query: 394 RKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGF 445
           +      +++     RK N+          + EK S   Q ++++    LG 
Sbjct: 622 KFCFERSEQTRNKRNRKSNFGFGGKGYKFSKDEKTS--LQLLKDDTKKILGL 671


>gi|121606431|ref|YP_983760.1| ATP-dependent RNA helicase DbpA [Polaromonas naphthalenivorans CJ2]
 gi|120595400|gb|ABM38839.1| ATP-dependent RNA helicase DbpA [Polaromonas naphthalenivorans CJ2]
          Length = 467

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 133/400 (33%), Positives = 205/400 (51%), Gaps = 10/400 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ L L   V+  +   GY   TPIQ   +P+ L   D+   A+TG+GKTA+F    L 
Sbjct: 7   DFSALSLPAHVLANLTQLGYTSMTPIQAAALPVALLGKDLIAQAKTGSGKTAAFA---LA 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
           +L    AR    + ++L PTRELA QV     +  +       + +  G+    Q   LE
Sbjct: 64  LLANLNARRFAIQAMVLCPTRELADQVTTEIRRLARAEENIKVVTLCGGVALRNQIASLE 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRI+DH  RG L +  +  LV+DEADRMLDMGF   I  +    P  RQT
Sbjct: 124 HGAHIVVGTPGRIMDHLGRGNLDLAAMNTLVLDEADRMLDMGFFDDIATVAKQCPKERQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + + K+S+ F++NP+ + V      ++  +  +      + +        + 
Sbjct: 184 LLFSATYPEGIAKISQQFMKNPQTVTVQAQHEKSKIRQRWYQVEDTDHDEARLDAVARVL 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +     + + FCN K     L   L+ +GF   A++G ++QR R ++L  F   +  ++V
Sbjct: 244 NHYRPVSTLAFCNTKSQCRALVQLLKDKGFIALALYGELEQRERDQVLVQFANRSCSVLV 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N DV   +E +IHRIGRTGRA   G A +L + +++  +  I
Sbjct: 304 ATDVAARGLDISQLEMVINVDVTPDSEIHIHRIGRTGRADEEGWAISLASMDEMGSVGKI 363

Query: 361 EKLIEKKVDWLNGDL------SSLNPPLEKIDIAQHNHAR 394
           E L + + +W   D         L PP+  + I      +
Sbjct: 364 EVLQKAESEWHKLDELTPASKEPLRPPMATLQIVGGRKEK 403


>gi|7022744|dbj|BAA91709.1| unnamed protein product [Homo sapiens]
          Length = 670

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 122/392 (31%), Positives = 200/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADL-GL-SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L  L +   + A+ + G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 178 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPA 237

Query: 60  LTILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K R   R    + IL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 238 VELIVKLRFMTRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK 297

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 298 LGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTR 357

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T++          S+K  LL  
Sbjct: 358 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLF 417

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 418 TFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSG 477

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
            ++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 478 TLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELG 536

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + D+    +S +   LEK+
Sbjct: 537 FLRYLKQSKVPLSEFDFSWSKISDIQSQLEKL 568


>gi|330794200|ref|XP_003285168.1| hypothetical protein DICPUDRAFT_76134 [Dictyostelium purpureum]
 gi|325084889|gb|EGC38307.1| hypothetical protein DICPUDRAFT_76134 [Dictyostelium purpureum]
          Length = 815

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 116/449 (25%), Positives = 203/449 (45%), Gaps = 14/449 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F DL LS      + ++ + K T IQ  ++P  L   D+ G A+TG+GKT +F++P + T
Sbjct: 111 FKDLPLSQLTQKGLTESKFYKLTDIQRASLPHTLCGRDILGAARTGSGKTLAFIIPVLET 170

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +     +R      ++L PTRELA Q+ D  +  GK++  +  LLIGG     + +K+  
Sbjct: 171 LWRNRWSRNDGIGAIVLSPTRELAIQIFDVLKSVGKHHTFSAGLLIGGRNVTQEKEKVNA 230

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +           +N+++LV+DEADR+LD+GF   + +I   +P  RQTL
Sbjct: 231 MNILIATPGRLLQHMDETYGFDCSNLKMLVLDEADRILDLGFSKSLNSILENLPKQRQTL 290

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ +    L  P+ I V                       K   +      
Sbjct: 291 LFSATQTKSVRDLVRLSLNEPEYISVYEKDIITAPQNLTQTICIIPLEMKL-NMLYSFVK 349

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK--ILSNFKEGTIQLM 299
                  I+F    K +  +  +             +   +   +  +  +F +    ++
Sbjct: 350 THLTSKVIVFFASCKQIRFVYETFRLLNPGTSLFQLHGKMKQWTRLEVFEDFCKKKAGVL 409

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P+V  V   D P+  E YIHRIGRT R    G+A T++   +    +A
Sbjct: 410 FATDIAARGLDFPEVEWVIQVDCPDDIETYIHRIGRTARNNATGQAITILLPSEK---EA 466

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +  L+EK+          L P  EK+       ++ +  + +K+      +K++ S    
Sbjct: 467 MTALLEKQ----KMKYEVLEPNPEKL---VSIDSQLSGFLSEKTELKYLAQKSFVSYLRS 519

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGN 448
           +  + +++I  +++   E+ + SLG  G 
Sbjct: 520 VYRQSNKEIFNIEKLNIEDFSKSLGLLGK 548


>gi|320335085|ref|YP_004171796.1| DEAD/DEAH box helicase domain-containing protein [Deinococcus
           maricopensis DSM 21211]
 gi|319756374|gb|ADV68131.1| DEAD/DEAH box helicase domain protein [Deinococcus maricopensis DSM
           21211]
          Length = 604

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 132/393 (33%), Positives = 215/393 (54%), Gaps = 10/393 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL ++P +   + + G ++ +PIQ +++P  +Q  D+ G A+TGTGKT +F +P++
Sbjct: 1   MQFTDL-IAPALAARLAERGILEASPIQAESLPHTMQGRDLIGRARTGTGKTLAFAIPVI 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             LE  R R R+PR LIL PTRELA QVA+ F+K           + GG  +  Q K L 
Sbjct: 60  DKLEPSRERGRLPRALILAPTRELAKQVAEEFKKSAPELLT--LTVYGGAAYGPQEKALY 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++ TPGR++DH  RG L ++ ++  ++DEAD ML +GF   I++I S  P TRQT
Sbjct: 118 GGVDVIVGTPGRVIDHIERGNLKLDAVQFAILDEADEMLSVGFADAIESILSATPETRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+   + ++   +L++P  +++   S               +  +    +     
Sbjct: 178 MLFSATLPAGVTRIGNKYLKDPLVVDLVGESRMQAAQTVQH--LKVKVGRTRTRVLADFL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +    +  I+F   K+ V  L   L  +G    A+HG++ Q  R + L +F+ G ++++V
Sbjct: 236 TIYNPERAIVFTRTKREVDELAMELIHRGLEAEALHGDLAQSQRERALGSFRAGRVRVLV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP++  V  + +P   E+Y+HR GRTGRAGR G A  +  + + + +  +
Sbjct: 296 ATDVAARGLDIPEIDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIVMYGEREGRELRNL 355

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           E     K +       S+  P E  + +    A
Sbjct: 356 EYQTGVKFEE-----RSIPTPKEVREASARAAA 383


>gi|156055836|ref|XP_001593842.1| hypothetical protein SS1G_05270 [Sclerotinia sclerotiorum 1980]
 gi|160358709|sp|A7EIX7|SUB2_SCLS1 RecName: Full=ATP-dependent RNA helicase sub2
 gi|154703054|gb|EDO02793.1| hypothetical protein SS1G_05270 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 444

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 93/373 (24%), Positives = 166/373 (44%), Gaps = 5/373 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L P+++ A+   G+  P+ +Q   IP  +   DV   A++G GKTA FVL  L  
Sbjct: 61  FREFLLKPELLRAISWCGFEHPSEVQQVCIPQAILGTDVLCQAKSGLGKTAVFVLTTLQQ 120

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +E       +       E   ++  +                   +         K  E 
Sbjct: 121 VEVVAGETSVLVMCHTRELAYQIRNEYQRFCHFMPDVKIGVFYGGVPISKDVEVLKNPET 180

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+        L +N++++ V+DE D+M   +     +Q I    P  +Q 
Sbjct: 181 HPHIIVGTPGRLNALVRDKYLRLNSVKVFVLDECDKMLDQIDMRRDVQEIFRATPPQKQV 240

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ E++ + + F+QNP  I ++  +         +     +  K   L +    
Sbjct: 241 MMFSATLSQEVRPICKKFMQNPLEIYIDNETKLTLYGLQQYYIKLEEREKNRRLNEL--L 298

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            + +    IIF         L   L +  F   AIH  + Q  R+K  ++FK+   ++ V
Sbjct: 299 DELSFNQVIIFVKSTVRATELDKLLRECNFPSVAIHSGVSQEERIKRFNDFKDFNKRICV 358

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+  RG+D+  +    N+D+P  A++Y+HR+GR GR G  G A + V+ E D + + A
Sbjct: 359 ATDVFGRGIDVNKINLAINYDLPPDADSYLHRVGRAGRFGTKGLAISFVSNEADQEVLKA 418

Query: 360 IEKLIEKKVDWLN 372
           +EK  E  +    
Sbjct: 419 VEKRFEVALPEYP 431


>gi|119890683|ref|XP_001249975.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 10-like [Bos
           taurus]
 gi|297473570|ref|XP_002686695.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 10-like [Bos
           taurus]
 gi|296488716|gb|DAA30829.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10-like [Bos taurus]
          Length = 671

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 120/392 (30%), Positives = 201/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADL-GL-SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            F  L  L +   + A+ + G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 179 SFDSLTNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPA 238

Query: 60  LTILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K +   R    + IL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 239 VELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK 298

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 299 LANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTR 358

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T++          S+K  LL  
Sbjct: 359 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLF 418

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +  K+V      L      V AIHG   Q  R      F      
Sbjct: 419 TFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSG 478

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
           +++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 479 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELG 537

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + ++    +S +   LEK+
Sbjct: 538 FLRYLKQSKVPLSEFEFSWSKISDIQSQLEKL 569


>gi|76675332|ref|XP_597469.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 isoform 1 [Bos
           taurus]
 gi|297471793|ref|XP_002685472.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Bos taurus]
 gi|296490513|gb|DAA32626.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Bos taurus]
          Length = 671

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 120/392 (30%), Positives = 201/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADL-GL-SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            F  L  L +   + A+ + G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 179 SFDSLTNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPA 238

Query: 60  LTILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K +   R    + IL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 239 VELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK 298

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 299 LANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTR 358

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T++          S+K  LL  
Sbjct: 359 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLF 418

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +  K+V      L      V AIHG   Q  R      F      
Sbjct: 419 TFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSG 478

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
           +++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 479 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELG 537

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + ++    +S +   LEK+
Sbjct: 538 FLRYLKQSKVPLSEFEFSWSKISDIQSQLEKL 569


>gi|28571808|ref|NP_732694.2| pitchoune, isoform B [Drosophila melanogaster]
 gi|28571809|ref|NP_524446.3| pitchoune, isoform A [Drosophila melanogaster]
 gi|33860195|sp|Q9VD51|DDX18_DROME RecName: Full=Probable ATP-dependent RNA helicase pitchoune
 gi|17945959|gb|AAL49024.1| RE48840p [Drosophila melanogaster]
 gi|21429110|gb|AAM50274.1| LD46167p [Drosophila melanogaster]
 gi|28381409|gb|AAF55951.2| pitchoune, isoform A [Drosophila melanogaster]
 gi|28381410|gb|AAN13900.2| pitchoune, isoform B [Drosophila melanogaster]
 gi|220946416|gb|ACL85751.1| pit-PA [synthetic construct]
 gi|220956056|gb|ACL90571.1| pit-PA [synthetic construct]
          Length = 680

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 113/392 (28%), Positives = 200/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L   +S   + A+ + G+ + T IQ K++  +L+  D+ G AQTG+GKT +F++P 
Sbjct: 186 SFASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPA 245

Query: 60  LTILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K R   R     +I+ PTREL+ Q     ++   +++ T  L++GG   + +++K
Sbjct: 246 VELINKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEK 305

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G ++L+ TPGR +    N    L  N++ L+IDE DR+L++GF   ++ I +L+P  
Sbjct: 306 LGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKR 365

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T  ++ +S+  L++         +    T++          S+K  L+  
Sbjct: 366 RQTMLFSATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLF 425

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V             V +IHG   Q  R      F      
Sbjct: 426 TFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESG 485

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
           +++ +D+AARGLDIP V  +  +D P+    YIHR+GRT R  G  G A  L+  E++  
Sbjct: 486 ILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELGF 545

Query: 357 IDAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
           +  + K  +  ++        ++ +   LEK+
Sbjct: 546 LRYL-KAAKVPLNEFEFSWQKIADIQLQLEKL 576


>gi|71901632|ref|ZP_00683711.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|71728608|gb|EAO30760.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
          Length = 544

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 130/430 (30%), Positives = 211/430 (49%), Gaps = 7/430 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F+   L P ++  +  A +   TPIQ  T+P+ L   D+ G AQTGTGKT +F++ ++
Sbjct: 10  LNFSSFDLHPALLTGLTRAAFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVV 69

Query: 61  TI----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                           PR LIL PTRELA Q+ ++  K+G N  L  AL+ GG+ ++ Q 
Sbjct: 70  NRLLSSPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQR 129

Query: 117 KKLERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           + L +GADV+I TPGR I        + +   EI V+DEADRM D+GFI  I+ I   +P
Sbjct: 130 EMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLP 189

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
                     + T   + +   +       E     + + T        Y    ++   L
Sbjct: 190 ERCSRQTLLFSATLSHRVLELAYEY-MNEPEKLVAETESVTTTRVRQRIYFPAEEEKIPL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L S+      ++F N K  V  +  +L++ G+ V  + G++ QR R  +L+ F++G 
Sbjct: 249 LLGLLSRSEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQKGQ 308

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           ++++VA+D+AARGL I  V +V+N+D+P  AE+Y+HRIGRT R G  G A +   +    
Sbjct: 309 LEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERYAM 368

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +  IE  IE+K+  +    + L  PL +   A + +      I   S      ++    
Sbjct: 369 SLPDIEAYIEQKIP-VAAVTAELLAPLSRPGRASNGNGDTVGDISPHSRDVLVAQEWRRG 427

Query: 416 QKSHIPLKES 425
           +    P +  
Sbjct: 428 KPRGSPGERD 437


>gi|328875962|gb|EGG24326.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 806

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 138/405 (34%), Positives = 213/405 (52%), Gaps = 12/405 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +G    ++ ++   GY  PT IQ + +P+ L   D+  IA+TG+GKTASF+ P +  
Sbjct: 333 FGHIGFDDIMIQSIQKQGYETPTSIQKQAVPIALSGRDLIAIAKTGSGKTASFIWPAIVH 392

Query: 63  LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       +   P  + + PTRELA Q+    +K+ K Y +   ++ GG+    Q ++L+
Sbjct: 393 IMNQPYLEKGDGPIAVFVSPTRELAHQIYMETQKFAKPYKIKTTVVYGGVTKLLQCRELK 452

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G ++L+ TPGRI+D        MN    LV+DEADRM DMGF P +Q+I   +   RQT
Sbjct: 453 AGCEILVGTPGRIIDMIKLKATKMNRCTFLVLDEADRMFDMGFEPQVQSIIGQIRPDRQT 512

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +++++ N L +P RI +    S  + I+       +   K   L + L  
Sbjct: 513 LLFSATFPNAIEQLARNILTDPIRISIGNSGSANQDIKQFVKVLPSDGEKWGWLTETLPL 572

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I    +   V  L  +L K GF    IHG+ DQ+ R +I+S FK GT+ ++V
Sbjct: 573 MLTEGNVVIFVSTKVA-VEQLSTNLLKFGFLADGIHGDKDQQERTQIISRFKSGTVPILV 631

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  + +V NFDV    +++ HR+GRTGRAG  G A TL+  +D      +
Sbjct: 632 ATDVAARGLDISLIKNVVNFDVSRDIDSHTHRVGRTGRAGTQGTAHTLITPKDTHFSADL 691

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            + +E+         ++ N P E I +A +N   K       S+ 
Sbjct: 692 VRHLEE---------ANQNVPPELITVAMNNPHFKRERGGNNSSD 727


>gi|312977884|ref|ZP_07789630.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           crispatus CTV-05]
 gi|310895191|gb|EFQ44259.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           crispatus CTV-05]
          Length = 453

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 132/440 (30%), Positives = 206/440 (46%), Gaps = 13/440 (2%)

Query: 1   MD--FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           M+  F D  + P +   +    + KPT +Q K IP +L    V   A TG+GKT ++++P
Sbjct: 1   MNNIFIDSRIKPAIQAGLKKIHFEKPTKVQEKVIPAMLSDLSVVVQAATGSGKTHAYLVP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +   +E+ +  V+   TL      +   QVA         +     L           K 
Sbjct: 61  IFNEIEEDKRYVQAIVTLPSRELADQLYQVARQLRDAAGMHFSIAHLAGRTDRERQLEKY 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 ++I TPGR+LD   +    ++ ++  VIDEAD  LDMGF+  I  + + +P   
Sbjct: 121 QNNTPQLVIATPGRLLDFVQKKVFAVDQVKTFVIDEADMTLDMGFLNDIDQVAAKLPKDV 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q   FSAT+  +L      ++ +P  I ++ PS  A TI           SK    +   
Sbjct: 181 QIAAFSATIPVKLSNFLRKYMAHPDDIVIDNPSVIAPTI---KNDLLDIGSKDRKNVLYK 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +       ++F N K+ V  L + L+ QG  V  IHG + +R R + L   ++G  Q 
Sbjct: 238 LLTMGQPYLALVFANTKQKVDELTNYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQYQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARGLDI  V  V N+++P   E  IHRIGRTGR G  G A TL+ +E++  I+
Sbjct: 298 VVASDLAARGLDIDGVSLVVNYEIPRDIEFVIHRIGRTGRNGLSGHAITLIREEEMNRIE 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF-----DRRKKNY 413
            +EK +    D++      L P   K   ++ N   KN  +  K  G+      +RK  Y
Sbjct: 358 DLEK-MGVHFDFVEIKNGELVP--RKHYRSRENRQSKNRKLDTKLVGYVKKEKRKRKPGY 414

Query: 414 SSQKSHIPLKESEKISKLQQ 433
             +      +++ +  KL+Q
Sbjct: 415 KKKIKRAIQEDNRQKRKLEQ 434


>gi|313157865|gb|EFR57271.1| DEAD/DEAH box helicase [Alistipes sp. HGB5]
          Length = 502

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 129/371 (34%), Positives = 218/371 (58%), Gaps = 7/371 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L  +++  + D  + + TP+Q  TIP++L+  D+ G AQTGTGKTA++ LP+L
Sbjct: 1   MRFDELELEDEILDGLYDMNFQEMTPVQEHTIPVILEGRDIIGCAQTGTGKTAAYTLPLL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
             L        + +++I+ PTRELA Q+   F+ +     ++  ++ GG     ++ Q +
Sbjct: 61  NRLLLEGNEDNVIKSVIIVPTRELAQQIDQQFQGFSYYLPISTTVVYGGGDGKGWDVQKR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +  G+DV+I TPGR++ H     + ++++E L++DEADRMLDMGF   I  I S +P  
Sbjct: 121 GMLMGSDVVIATPGRMISHIQNSGIDLSHVECLILDEADRMLDMGFSEDIMKIVSYMPKE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSAT+  ++++      +   R       + ++  E    + Y  Y  +   + +
Sbjct: 181 RQTIMFSATLPPKIRE----LAKTILRNPAEVNIAISKPNEAIDQSAYVCYENQKLGIIR 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            + ++ T    IIF + K  V  L H+L++   +V A+H +++Q  R +++ +FK   + 
Sbjct: 237 EMFAEPTESKTIIFSSSKMKVKELAHTLKRMKLNVAAMHSDLEQAQREEVMLDFKNNKVS 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+ ARG+DI D+G V N+DVP+  E+YIHRIGRT RA   G A T V++E+    
Sbjct: 297 ILVATDIVARGIDIEDIGLVINYDVPHDPEDYIHRIGRTARAAATGAAVTFVSEEEQGKF 356

Query: 358 DAIEKLIEKKV 368
            AIEK IE+ +
Sbjct: 357 HAIEKFIERDI 367


>gi|301755322|ref|XP_002913508.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like [Ailuropoda
           melanoleuca]
          Length = 654

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 130/396 (32%), Positives = 208/396 (52%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 241 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 300

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 301 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 360

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 361 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 420

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 421 WVEESDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   + +I     +  L+ +    +   L ++
Sbjct: 539 GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 574


>gi|297303643|ref|XP_001095294.2| PREDICTED: ATP-dependent RNA helicase DDX3X [Macaca mulatta]
          Length = 738

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 130/396 (32%), Positives = 208/396 (52%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 278 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 337

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 338 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 397

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 398 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 457

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 458 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 517

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 518 WVEESDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 575

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 576 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 635

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   + +I     +  L+ +    +   L ++
Sbjct: 636 GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 671


>gi|197692141|dbj|BAG70034.1| ATP-dependent RNA helicase DDX3X [Homo sapiens]
 gi|197692387|dbj|BAG70157.1| ATP-dependent RNA helicase DDX3X [Homo sapiens]
          Length = 662

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 130/396 (32%), Positives = 208/396 (52%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 241 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 300

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 301 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 360

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 361 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 420

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 421 WVEESDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   + +I     +  L+ +    +   L ++
Sbjct: 539 GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 574


>gi|301171475|ref|NP_001180346.1| ATP-dependent RNA helicase DDX3X isoform 3 [Homo sapiens]
 gi|296235291|ref|XP_002762846.1| PREDICTED: ATP-dependent RNA helicase DDX3X isoform 2 [Callithrix
           jacchus]
 gi|297709770|ref|XP_002831597.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Pongo
           abelii]
 gi|194388152|dbj|BAG65460.1| unnamed protein product [Homo sapiens]
          Length = 646

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 130/396 (32%), Positives = 208/396 (52%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 165 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 224

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 225 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 284

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 285 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 344

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 345 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 404

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 405 WVEESDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 462

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 463 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 522

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   + +I     +  L+ +    +   L ++
Sbjct: 523 GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 558


>gi|194227826|ref|XP_001491482.2| PREDICTED: similar to ATP-dependent RNA helicase DDX3X (DEAD box
           protein 3, X-chromosomal) (Helicase-like protein 2)
           (HLP2) (DEAD box, X isoform) [Equus caballus]
          Length = 762

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 130/396 (32%), Positives = 208/396 (52%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 281 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 340

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 341 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 400

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 401 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 460

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 461 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 520

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 521 WVEESDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 578

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 579 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 638

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   + +I     +  L+ +    +   L ++
Sbjct: 639 GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 674


>gi|126303427|ref|XP_001379754.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 495

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 76/467 (16%), Positives = 153/467 (32%), Gaps = 34/467 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++ A+ + G+ +PT IQ K IPL L+  D+   A+TG+GKTA++ +P+L  
Sbjct: 9   FQHMGLDQRLLQAIAEQGWARPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPLLQH 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKKLE 120
           L   +A   +    I         ++A   +   +      +  + +  +          
Sbjct: 69  LLHRKATGPVVEQAIRGLVLVPTKELARQAQTMIRQLTAYCSRDVRVVDVSASEDFAFQS 128

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +          + +   L    +   V  +       G                  
Sbjct: 129 HLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPG------------------ 170

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
                   D+LQ+          +  +         +    +       +   L   L Q
Sbjct: 171 -------PDQLQQFQVVCETEEDKFLLLYALLKLSLLRGKSLLFVNTLERGYRLRLFLEQ 223

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                         +     +    +     V A    +                 +   
Sbjct: 224 FSIPACVLNGELPLRSRCHIISQFNQGFYDCVIATDEEVLGAPFKGKRRGQGSKGERASD 283

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
                ARG+D  +V  V NFD+P   E YIHR GRT RA   G A T V   +   +  I
Sbjct: 284 TESGVARGIDFHNVTAVLNFDLPPSPEAYIHRAGRTARANNPGTALTFVLPTERPQLKEI 343

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR----RKKNYSSQ 416
           E+ +    +            +E+I+  ++        + +++    R    +++   S+
Sbjct: 344 EEALGG--ESAESMFLPYQFRMEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSE 401

Query: 417 KSHIPLKESEK-ISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLN 462
           K     +++ + +  L+ D   + A      G++P +++P     + 
Sbjct: 402 KLKTYFEDNPRDLQLLRHDRPLHPAVVKPHLGHVPDYLVPPTLRGIA 448


>gi|300794325|ref|NP_001179891.1| ATP-dependent RNA helicase DDX3X [Bos taurus]
 gi|297493243|ref|XP_002700250.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Bos
           taurus]
 gi|296470612|gb|DAA12727.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Bos taurus]
          Length = 661

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 130/396 (32%), Positives = 208/396 (52%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 180 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 239

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 240 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 299

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 300 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 359

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 360 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 419

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 420 WVEESDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 477

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 478 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 537

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   + +I     +  L+ +    +   L ++
Sbjct: 538 GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 573


>gi|114794734|pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
          Length = 417

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 130/396 (32%), Positives = 208/396 (52%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 16  SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 75

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 76  QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 135

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 136 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 195

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 196 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 255

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 256 WVEESDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 313

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 314 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 373

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   + +I     +  L+ +    +   L ++
Sbjct: 374 GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 409


>gi|74006736|ref|XP_861449.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 8 [Canis familiaris]
          Length = 663

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 130/396 (32%), Positives = 208/396 (52%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 241 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 300

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 301 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 360

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 361 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 420

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 421 WVEESDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   + +I     +  L+ +    +   L ++
Sbjct: 539 GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 574


>gi|74006742|ref|XP_861537.1| PREDICTED: similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide
           3 isoform 11 [Canis familiaris]
          Length = 646

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 130/396 (32%), Positives = 208/396 (52%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 165 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 224

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 225 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 284

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 285 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 344

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 345 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 404

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 405 WVEESDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 462

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 463 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 522

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   + +I     +  L+ +    +   L ++
Sbjct: 523 GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 558


>gi|62087546|dbj|BAD92220.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 variant [Homo
           sapiens]
          Length = 674

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 130/396 (32%), Positives = 208/396 (52%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 193 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 252

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 253 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 312

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 313 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 372

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 373 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 432

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 433 WVEESDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 490

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 491 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 550

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   + +I     +  L+ +    +   L ++
Sbjct: 551 GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 586


>gi|2580550|gb|AAC51829.1| dead box, X isoform [Homo sapiens]
 gi|2580552|gb|AAC51830.1| dead box, X isoform [Homo sapiens]
          Length = 662

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 130/396 (32%), Positives = 208/396 (52%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 241 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 300

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 301 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 360

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 361 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 420

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 421 WVEESDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   + +I     +  L+ +    +   L ++
Sbjct: 539 GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 574


>gi|74006722|ref|XP_861268.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 3 [Canis familiaris]
 gi|74006724|ref|XP_861300.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 4 [Canis familiaris]
 gi|74006730|ref|XP_861379.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 6 [Canis familiaris]
 gi|74006732|ref|XP_538003.2| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 1 [Canis familiaris]
          Length = 662

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 130/396 (32%), Positives = 208/396 (52%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 241 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 300

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 301 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 360

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 361 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 420

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 421 WVEESDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   + +I     +  L+ +    +   L ++
Sbjct: 539 GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 574


>gi|74006728|ref|XP_850382.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 2 [Canis familiaris]
          Length = 663

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 130/396 (32%), Positives = 208/396 (52%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 241 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 300

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 301 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 360

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 361 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 420

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 421 WVEESDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   + +I     +  L+ +    +   L ++
Sbjct: 539 GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 574


>gi|47217137|emb|CAG02638.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 602

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 143/438 (32%), Positives = 221/438 (50%), Gaps = 34/438 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ +   ++  +  + Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+
Sbjct: 128 SFQDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKSKRDLMACAQTGSGKTAAFLLPVLS 187

Query: 62  ILEKGRA-------------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT 102
            +                        R + P +L+L PTRELA Q+ D   K+     + 
Sbjct: 188 QIYTDGPGDALQAIKSSGQENGRYGRRKQYPISLVLAPTRELALQIYDEARKFAYRSRVR 247

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
             ++ GG     Q + LERG  +L+ TPGR++D   RGK+ ++    LV+DEADRMLDMG
Sbjct: 248 PCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMG 307

Query: 163 FIPYIQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
           F P I+      T      RQT++FSAT   E+Q ++ +FL++   + V    ST+E I 
Sbjct: 308 FEPQIRRIVEQDTMPPKGIRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENIT 367

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
              V       +   L       +D++   ++F   KK    L   L ++G++  +IHG+
Sbjct: 368 QKVVWVEELDKRSFLLDLLNATGKDSL--TLVFVETKKGADALEDFLYREGYACTSIHGD 425

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
             QR R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR
Sbjct: 426 RSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 485

Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
            G  G A +    ++      +  L+ +    +   L SL          +H H   N  
Sbjct: 486 VGNLGLATSFFNDKNSNITKDLLDLLVEAKQGIPTWLESL--------AYEHQHKSSNRG 537

Query: 399 IPQK-STGFDRRKKNYSS 415
             ++ S GF  R    SS
Sbjct: 538 RSKRFSGGFGARDYRQSS 555


>gi|87196351|ref|NP_001347.3| ATP-dependent RNA helicase DDX3X isoform 1 [Homo sapiens]
 gi|3023628|sp|O00571|DDX3X_HUMAN RecName: Full=ATP-dependent RNA helicase DDX3X; AltName: Full=DEAD
           box protein 3, X-chromosomal; AltName: Full=DEAD box, X
           isoform; AltName: Full=Helicase-like protein 2;
           Short=HLP2
 gi|2148924|gb|AAB95637.1| helicase like protein 2 [Homo sapiens]
 gi|3523150|gb|AAC34298.1| DEAD box RNA helicase DDX3 [Homo sapiens]
 gi|15080078|gb|AAH11819.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Homo sapiens]
 gi|57209229|emb|CAI41416.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Homo sapiens]
 gi|119579806|gb|EAW59402.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|119579807|gb|EAW59403.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|119579808|gb|EAW59404.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|119579809|gb|EAW59405.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|158255742|dbj|BAF83842.1| unnamed protein product [Homo sapiens]
 gi|168277370|dbj|BAG10663.1| ATP-dependent RNA helicase DDX3X [synthetic construct]
          Length = 662

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 130/396 (32%), Positives = 208/396 (52%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 241 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 300

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 301 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 360

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 361 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 420

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 421 WVEESDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   + +I     +  L+ +    +   L ++
Sbjct: 539 GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 574


>gi|320588377|gb|EFX00846.1| eukaryotic translation initiation factor [Grosmannia clavigera
           kw1407]
          Length = 396

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 132/377 (35%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L P ++  +   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 24  SFDDMNLKPDLLRGIYAYGFERPSAIQQRAIIPVIKNHDVIAQAQSGTGKTATFSISVLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+  + LIL PTRELA Q+       G   N+     IGG       K L+ 
Sbjct: 84  KIDTN---VKQCQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVREDMKALQD 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + +++ V+DEAD ML  GF   I +I  L+P + Q +
Sbjct: 141 GPQVVVGTPGRVQDMIQRRFLKTDAMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 201 LLSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A
Sbjct: 259 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 379 QFYSTQIEEMPMNVADL 395


>gi|301605166|ref|XP_002932198.1| PREDICTED: probable ATP-dependent RNA helicase DDX59-like [Xenopus
           (Silurana) tropicalis]
          Length = 785

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 123/421 (29%), Positives = 199/421 (47%), Gaps = 6/421 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F      P +   +  AGY  PTPIQ++ IP+ L   D+   A TG+GKTA+F+LP +
Sbjct: 370 MEFDHCQFPPVLSSNIKAAGYEVPTPIQMQMIPVGLMGRDILASADTGSGKTAAFLLPAI 429

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
                   +   P  LIL PTRELA Q+    ++  +   ++  ALL+GG+P   Q  +L
Sbjct: 430 IRC---LEKKDSPAALILTPTRELAVQIEGQAKELMRGIPHMRTALLVGGMPLPPQIHRL 486

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G  V+I TPGR+L+   +  + + +++IL++DEAD ML MGF   + +I  +VP   Q
Sbjct: 487 KQGVQVIIATPGRLLEIIKQDSVNLGDLKILIVDEADTMLKMGFQQQVLDILEVVPHDHQ 546

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+L SAT+   ++  ++  LQ+P RI V   +     +    +       KK        
Sbjct: 547 TILVSATIPAGIEAFTKQLLQDPVRITVGEKNQPCTNVRQIVLWVEEPSKKKKLFEILND 606

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    +    +    +      +  G    A+H +  Q  RMKIL    +G   ++
Sbjct: 607 SKLFQPPVLVFVDCRLGADLLSDAVSKITGLECVAMHSDKSQVERMKILQGLLQGEYDVV 666

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +  RGLD+ +V  V NFD+P+  + Y+H+IGR GR G  G A T + K +      
Sbjct: 667 VSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQIGRAGRLGHRGTAITFINKNNRNLFWD 726

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           + K ++     L   L  LN P  +         R++              + +   KSH
Sbjct: 727 LVKRVQPTGSLLPPQL--LNSPYVQEQKKVDERLRRDKEKVVTGDQILDLIRKHDRHKSH 784

Query: 420 I 420
            
Sbjct: 785 K 785


>gi|114675745|ref|XP_001171808.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 isoform 5 [Pan
           troglodytes]
          Length = 427

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 90/375 (24%), Positives = 152/375 (40%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V          T     +  + F KY  +  ++V      I  + +  K    
Sbjct: 106 IEPVNGQVVEAAVCYDHTTALQPGKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    NR   L N    ++ +    +  +G      ++     + R  L 
Sbjct: 166 HVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLGERGSCGDLRESCCWQRDVLF 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            S +            L +P  + V+  +         +        K   L        
Sbjct: 226 LSPSRMGPRGPSKPPSLLDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL--LDV 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 284 LEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 403

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 404 DRFEVNVAELPEEID 418


>gi|241148960|ref|XP_002405949.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215493782|gb|EEC03423.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 460

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 105/381 (27%), Positives = 180/381 (47%), Gaps = 28/381 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58
           + F +      ++  +    Y  PT IQ +  P+ L   ++ GIAQTG+GKT  ++LP  
Sbjct: 90  LRFDEGNFPDYIMKGIEAQKYTTPTCIQAQGWPIALSGKNLVGIAQTGSGKTLGYILPAI 149

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +    +    R   P  L+L PTRELA Q+     ++GK   +    + GG P   Q + 
Sbjct: 150 IHINHQPYLQRGDGPIALVLAPTRELAQQIQQVSSEFGKASRVRSTCVFGGAPKGPQLRD 209

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +ERG+++ I TPGR++D    GK+ +                                  
Sbjct: 210 IERGSEICIATPGRLIDFLEAGKVNLRRCTY-------------------------LPDC 244

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQ 237
           QTL++SAT   E++ ++E FL++  +I +      A       +    +  K+   +   
Sbjct: 245 QTLMWSATWPKEVRSLAEEFLRDYIQINIGALQLCANHRILQIIDVCQETEKEDKLMKLH 304

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                +     I+F   K+ V +L   + + G+    IHG+  Q+ R  +L+ F+ G   
Sbjct: 305 QEILNEKENKTIVFAETKRKVDDLTRKMRRYGWPAICIHGDKTQQERDWVLNEFRSGRAP 364

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLD+ DV  V N+D PN +E+YIHRIGRT R+ + G A+T     + +  
Sbjct: 365 ILVATDVAARGLDVDDVRFVINYDYPNCSEDYIHRIGRTARSNKTGTAYTFFTPNNSRQA 424

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             +  ++++    +N  L  +
Sbjct: 425 KELISVLQEANQVVNPKLYEI 445


>gi|169642132|gb|AAI60762.1| LOC100127243 protein [Xenopus laevis]
          Length = 638

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 121/420 (28%), Positives = 198/420 (47%), Gaps = 7/420 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F      P +   +  AGY  PTPIQ++ IP+ L   D+   A TG+GKTA+F+LP +
Sbjct: 223 MEFDHCQFPPVLGSNIKAAGYEVPTPIQMQMIPVGLMERDILASADTGSGKTAAFLLPAI 282

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
                   +   P  LIL PTRELA Q+    ++  +   ++  ALL+GG+P   Q  +L
Sbjct: 283 IRC---LEKKDSPAALILTPTRELAVQIEGQAKELMRGIPHMRTALLVGGMPLPPQIHRL 339

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   ++I TPGR+L+  N+  + + +++IL++DEAD ML MGF   + +I        Q
Sbjct: 340 KQAVQIIIATPGRLLEIINQDCVNLGDLKILIVDEADTMLKMGFQQQVLDILEHASHDHQ 399

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+L SAT+   ++  ++  LQ+P RI V   +     +    +       KK        
Sbjct: 400 TILVSATIPAGIEAFTKQLLQDPVRITVGEKNQPCSNVRQIVLWVEEPSKKKKLFEILND 459

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    +    +    +      +  G    A+H +  Q  RMKIL    +G   ++
Sbjct: 460 SKLFQPPVLVFVDCRLGADLLSDAICKITGLECVAMHSDKSQMERMKILQGLLQGEYDVV 519

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +  RGLD+ +V  V NFD+P   + Y+H+IGR GR G  G A TL+ + +      
Sbjct: 520 VSTGVLGRGLDLVNVKLVVNFDMPPSMDEYVHQIGRAGRLGHRGTAITLINRNNRSLFWD 579

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD--RRKKNYSSQK 417
           + K ++     L   L + +P L++         R    +       D  R+     SQK
Sbjct: 580 LVKRVQPTGSLLPPQLLN-SPYLQEQKKVDERGRRDKEKVVTGDQILDLIRKHDRRKSQK 638


>gi|149033136|gb|EDL87954.1| rCG37594 [Rattus norvegicus]
          Length = 623

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 120/392 (30%), Positives = 199/392 (50%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP- 58
            FA L   ++   + A+ + G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 131 SFASLSNLVNENTLKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPV 190

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  I++           LIL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 191 IELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQK 250

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 251 LLNGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPAR 310

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T++          S+K  LL  
Sbjct: 311 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLF 370

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 371 TFLKKNRKKKVMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSG 430

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
           +++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 431 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELG 489

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + D+    +S +   LEK+
Sbjct: 490 FLRYLKQSKVPLNQFDFSWSKVSDIQSQLEKL 521


>gi|62896883|dbj|BAD96382.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 variant [Homo sapiens]
          Length = 547

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 121/493 (24%), Positives = 206/493 (41%), Gaps = 41/493 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F  +GL P+++ AV D G+ +PT IQ K IPL L+  D+   A+TG+GKTA++ +PM   
Sbjct: 9   FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQ 115
            L     G    +  R L+L PT+ELA Q     ++        V +            +
Sbjct: 69  LLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQR 128

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              +E+   V+      +         L +++E+LV+DEAD +   GF   ++++   +P
Sbjct: 129 AVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q  L SAT  +++Q + E  L NP  +++             F         K  LL
Sbjct: 189 RIYQAFLMSATFNEDVQALKELILHNPATLKLQESQLPGPDQLQQFQVVCETEEDKFLLL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL+        ++F N  +    L   LE+     C ++G +  RSR  I+S F +G 
Sbjct: 249 YALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGF 308

Query: 296 IQL---------------------------MVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
                                                ARG+D   V  V NFD+P   E 
Sbjct: 309 YDCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTTEA 368

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHR GRT RA   G   T V   +  H+  IE+L+    +     L      +E+I+  
Sbjct: 369 YIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELL--SGENRGPILLPYQFRMEEIEGF 426

Query: 389 QHNHARKNNPIPQKSTGFDR----RKKNYSSQKSHIPLKESEK-ISKLQQDIQENDADSL 443
           ++        + +++    R    +++   S+K     +++ + +  L+ D+  + A   
Sbjct: 427 RYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVK 486

Query: 444 GFRGNMPAFMLPK 456
              G++P +++P 
Sbjct: 487 PHLGHVPDYLVPP 499


>gi|55741498|ref|NP_001006997.1| ATP-dependent RNA helicase DDX18 [Rattus norvegicus]
 gi|54035578|gb|AAH83919.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Rattus norvegicus]
          Length = 674

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 120/392 (30%), Positives = 199/392 (50%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP- 58
            FA L   ++   + A+ + G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 182 SFASLSNLVNENTLKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPV 241

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  I++           LIL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 242 IELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQK 301

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 302 LLNGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPAR 361

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T++          S+K  LL  
Sbjct: 362 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLF 421

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 422 TFLKKNRKKKVMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSG 481

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
           +++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 482 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELG 540

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + D+    +S +   LEK+
Sbjct: 541 FLRYLKQSKVPLNQFDFSWSKVSDIQSQLEKL 572


>gi|332141363|ref|YP_004427101.1| ATP-dependent RNA helicase, DEAD box family protein [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551385|gb|AEA98103.1| ATP-dependent RNA helicase, DEAD box family protein [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 441

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 120/430 (27%), Positives = 205/430 (47%), Gaps = 6/430 (1%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTI 62
           +DL +  K++  +        T IQ +T+   +Q  D+   ++TG+GKT +F++P +  +
Sbjct: 4   SDLPVHHKIISKLESKNISTLTEIQERTMLPAIQGKDIIASSKTGSGKTFAFLVPAINRL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + +     + PR LIL PTRELA QV    +      NLT +L++GG  +  Q K L R 
Sbjct: 64  MAQKALSRQDPRALILAPTRELAKQVFIEAKSMCTGLNLTCSLIVGGENYNDQVKALRRN 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ T GR+ DH     + +N +E+L+ DEADRMLD+GF   ++ I       ++  +
Sbjct: 124 PHIIVGTAGRVADHLLDKSVYLNGLELLIFDEADRMLDLGFSAQLKMINDYADHRKRQTM 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
             +   D ++            + V    STAE  +      +A        + Q   + 
Sbjct: 184 LFSATLDNIELKHMTTQLTKGAVRVAVGDSTAEHGDIEQKCFFADNVDNKDQILQFELAN 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T    I+F   +++   +   L +Q     A+ G++ Q  R  ++S F  G   ++V +
Sbjct: 244 RTYNQAIVFTATREDTDRIAALLNEQNLEAIALRGDMLQSQRAAVMSAFARGQHSILVTT 303

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLA+RGLD+  VG V NFD+P  A+ YIHRIGRTGRAG+ G+AF+L+   D    + ++ 
Sbjct: 304 DLASRGLDLSKVGLVVNFDLPKNADEYIHRIGRTGRAGQKGEAFSLIGPRDWNSFEGLKN 363

Query: 363 LIEKKVDWLNGDLSSLN----PPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK- 417
            ++  ++    D  S +     P +K+         K            +R    S +  
Sbjct: 364 HLQYALECSPHDEFSASFKGFKPKKKVSKGATAQNGKKRVAKPVKANVKKRVDTMSGEDI 423

Query: 418 SHIPLKESEK 427
             +P+K   +
Sbjct: 424 GMVPVKRKPR 433


>gi|116493012|ref|YP_804747.1| superfamily II DNA/RNA helicase [Pediococcus pentosaceus ATCC
           25745]
 gi|116103162|gb|ABJ68305.1| Superfamily II DNA and RNA helicase [Pediococcus pentosaceus ATCC
           25745]
          Length = 453

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 127/464 (27%), Positives = 217/464 (46%), Gaps = 36/464 (7%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F    L P ++ A+ +  +  PTP+Q K IPL+     V G +QTG+GKT +F+LP+
Sbjct: 1   MNEFQKFNLKPFLMTALDEINFKTPTPVQDKVIPLIADGKSVVGQSQTGSGKTHAFLLPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQN 116
              ++     +   + +I  P+RELA Q+ ++ ++      + + +              
Sbjct: 61  FNNIDP---ELNAIQAVITTPSRELAYQIYEDAKQLASASEVKIEIGNYVGGTDKKRQVE 117

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K       ++I TPGR+LD      L    ++ +VIDEAD  LDMGF+  +  I + +P 
Sbjct: 118 KLGHHQPAIIIGTPGRVLDLLKERALNFRQVKYMVIDEADMTLDMGFLNAVDQIAAAMPS 177

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q L+FSAT+   L    + ++ +P   E+ T ++ + TI++  ++T +          
Sbjct: 178 KLQILVFSATIPQRLNVFLKKYMDHPVIEEIPTETTISPTIKNILISTKSSGKNNLIYKL 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               +       ++F N K+    L   L+ QG  V  IHG I  R R +I+ +      
Sbjct: 238 L---TMGEPYLALVFTNTKERADELTDYLKAQGLDVAKIHGGIQPRERKRIMKDIHRLRY 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VA+DLAARG+DI  V  V N D+P   E +IHR+GRTGR G  G A TL    +   
Sbjct: 295 QYVVATDLAARGIDIDGVSLVINDDIPTDLEFFIHRVGRTGRNGMSGTAITLYMPNEEDK 354

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI-------------PQKS 403
           +  +EK+    + +L   + + N  ++  D  +    R +                 +  
Sbjct: 355 VADVEKM---GITFLPQQIRN-NELVDTYDRDRRQTRRLSQKKLDPTMIGMVKKKKKKVK 410

Query: 404 TGFDRRKKNYSSQKS--------HIPLKESEKISKLQQDIQEND 439
            G+ RR +   S+K         H  ++E++K +K++Q   +  
Sbjct: 411 PGYKRRIRKAISEKEIRDRRMEQHQAVREAKK-AKIKQSRNKRR 453


>gi|330812282|ref|YP_004356744.1| ATP-independent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380390|gb|AEA71740.1| putative ATP-independent RNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 560

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 124/369 (33%), Positives = 198/369 (53%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 107 FNTLPLSAAMLANLESLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 166

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  +  +    L +  G+ F  Q   LE 
Sbjct: 167 I---NPRFFGCQALVMCPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSFGPQIASLEH 223

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I++I    P  RQTL
Sbjct: 224 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIIQQTPERRQTL 283

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F     R      +    +        Y    ++       + +
Sbjct: 284 LFSATYPVGIKQLSSKF----MRNPQQVKAEAFHSDAQIEQRFYEISPEERMDAVVKVLA 339

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FC  K+ V      L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 340 HFRPASCVAFCFTKQQVQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 399

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  +     AIE
Sbjct: 400 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAISLVAPSEAHRAQAIE 459

Query: 362 KLIEKKVDW 370
           +L +  + W
Sbjct: 460 QLQKSPLSW 468


>gi|218704863|ref|YP_002412382.1| ATP-dependent RNA helicase DbpA [Escherichia coli UMN026]
 gi|293404872|ref|ZP_06648864.1| ATP-dependent RNA helicase DbpA [Escherichia coli FVEC1412]
 gi|298380516|ref|ZP_06990115.1| ATP-independent RNA helicase DbpA [Escherichia coli FVEC1302]
 gi|300900110|ref|ZP_07118304.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|331672872|ref|ZP_08373658.1| ATP-independent RNA helicase DbpA [Escherichia coli TA280]
 gi|218431960|emb|CAR12845.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           UMN026]
 gi|291427080|gb|EFF00107.1| ATP-dependent RNA helicase DbpA [Escherichia coli FVEC1412]
 gi|298277958|gb|EFI19472.1| ATP-independent RNA helicase DbpA [Escherichia coli FVEC1302]
 gi|300356389|gb|EFJ72259.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|331070093|gb|EGI41462.1| ATP-independent RNA helicase DbpA [Escherichia coli TA280]
          Length = 457

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 208/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLDELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W    ++S   PLE
Sbjct: 357 SDMLQIKLNWQTPPVNSSIVPLE 379


>gi|213967864|ref|ZP_03396010.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           T1]
 gi|213927207|gb|EEB60756.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           T1]
          Length = 473

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 125/373 (33%), Positives = 199/373 (53%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 20  FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++ +    L +  G+ F  Q   LE 
Sbjct: 80  I---NPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 137 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQTPQRRQTL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F     R                    Y    ++       +  
Sbjct: 197 LFSATYPVGIKQLSSKF----MRDPQTVKVEALHADSQIEQIFYEISPEQRLEAVVKVLG 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 253 HFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 313 TDVAARGLDIDALDMVLNVELARDSEIHIHRVGRTGRAGETGIAVSLVAPSESQRARAIE 372

Query: 362 KLIEKKVDWLNGD 374
           +L +  ++W   D
Sbjct: 373 ELQKAPLNWQQYD 385


>gi|28872121|ref|NP_794740.1| ATP-independent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|301384383|ref|ZP_07232801.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062325|ref|ZP_07253866.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           K40]
 gi|302132329|ref|ZP_07258319.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28855375|gb|AAO58435.1| ATP-independent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331014545|gb|EGH94601.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 459

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 125/373 (33%), Positives = 199/373 (53%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GY + TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  ++ +    L +  G+ F  Q   LE 
Sbjct: 66  I---NPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I +I    P  RQTL
Sbjct: 123 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQTPQRRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++++S  F     R                    Y    ++       +  
Sbjct: 183 LFSATYPVGIKQLSSKF----MRDPQTVKVEALHADSQIEQIFYEISPEQRLEAVVKVLG 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FC  K+ V  +   L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 239 HFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  + +   AIE
Sbjct: 299 TDVAARGLDIDALDMVLNVELARDSEIHIHRVGRTGRAGETGIAVSLVAPSESQRARAIE 358

Query: 362 KLIEKKVDWLNGD 374
           +L +  ++W   D
Sbjct: 359 ELQKAPLNWQQYD 371


>gi|310756762|gb|ADP20522.1| ATP-dependent RNA helicase DDX3X [Heterocephalus glaber]
          Length = 662

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 135/425 (31%), Positives = 217/425 (51%), Gaps = 30/425 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 241 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 300

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 301 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 360

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 361 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 420

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L ++G++  +IHG+  QR
Sbjct: 421 WVEDIDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYREGYACTSIHGDRSQR 478

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           G A +     +      +  L+ +    +   L ++         A  +H + N+    K
Sbjct: 539 GLATSFFNDRNANITKDLLDLLVEAKQEVPSWLENM---------AFEHHYKGNSRGRSK 589

Query: 403 STGFD 407
           S+ F 
Sbjct: 590 SSRFS 594


>gi|331682838|ref|ZP_08383457.1| ATP-independent RNA helicase DbpA [Escherichia coli H299]
 gi|331080469|gb|EGI51648.1| ATP-independent RNA helicase DbpA [Escherichia coli H299]
          Length = 457

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 133/386 (34%), Positives = 210/386 (54%), Gaps = 10/386 (2%)

Query: 1   MD-FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           M  F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L 
Sbjct: 1   MSAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPTILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNK 117
           +L  ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q  
Sbjct: 61  LLQQIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRD 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+    +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +
Sbjct: 118 SLQHAPHIIVATPGRMLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT  + +           +R  +     + + +       Y   SK    L Q
Sbjct: 178 RQTLLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQ 233

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L S     + ++FCN KK+  ++C +L + G S  ++HG+++QR R + L  F  G+ +
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLE 383
           + I  +++ K++W    ++S   PLE
Sbjct: 354 NIISDMLQIKLNWQTPPVNSSIVPLE 379


>gi|239996465|ref|ZP_04716989.1| ATP-dependent RNA helicase, DEAD box family protein [Alteromonas
           macleodii ATCC 27126]
          Length = 441

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 121/430 (28%), Positives = 206/430 (47%), Gaps = 6/430 (1%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTI 62
            DL +  K++  +        T IQ +T+   +Q  D+   ++TG+GKT +F++P +  +
Sbjct: 4   TDLPVHHKIISKLETKNISTLTEIQERTMLPAIQGKDIIASSKTGSGKTFAFLVPAINRL 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           + +     + PR LIL PTRELA QV    +      NLT +L++GG  +  Q K L R 
Sbjct: 64  MSQKALSRQDPRALILAPTRELAKQVFIEAKSMCTGLNLTCSLIVGGENYNDQVKALRRN 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ T GR+ DH     + +N +E+L+ DEADRMLD+GF   ++ I       ++  +
Sbjct: 124 PHIIVGTAGRVADHLLDKSVYLNGLELLIFDEADRMLDLGFSAQLKMINDYADHRKRQTM 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
             +   D ++            + V    STAE  +      +A        + Q   + 
Sbjct: 184 LFSATLDNIELKHMTTQLTKGAVRVAVGDSTAEHGDIEQKCFFADNVDNKDQILQFELAN 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            T    I+F   +++   +   L +Q     A+ G++ Q  R  ++S F  G   ++V +
Sbjct: 244 RTYNQAIVFTATREDTDRIAALLNEQNLEAIALRGDMLQSQRAAVMSAFARGQHSILVTT 303

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLA+RGLD+  VG V NFD+P  A+ YIHRIGRTGRAG+ G+AF+L+   D    + ++ 
Sbjct: 304 DLASRGLDLSKVGLVVNFDLPKNADEYIHRIGRTGRAGQKGEAFSLIGPRDWNSFEGLKN 363

Query: 363 LIEKKVDWLNGDLSSLN----PPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK- 417
            ++  ++    D  S +     P +K+    +    K         G  +R    S +  
Sbjct: 364 HLQYALECSPHDEFSASFKGFTPKKKVSKQSNAKNGKKRVAKPAKPGTKKRVDTMSGEDI 423

Query: 418 SHIPLKESEK 427
             +P+K   +
Sbjct: 424 GMVPVKRKPR 433


>gi|149724020|ref|XP_001503919.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Equus
           caballus]
          Length = 597

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 111/442 (25%), Positives = 209/442 (47%), Gaps = 29/442 (6%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     ++ +++  +LDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 160 TFQQLEQEYKINSQLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 219

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L++   +      LI+ PTRELA+Q+     K  +        +    +  +   
Sbjct: 220 PILMQLKQPTNKGFR--ALIISPTRELASQIHRELVKISEGTGFRIHMIHKAAVAAKKFG 277

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++    +    ++  ++E L++DE+D++ + G   +        
Sbjct: 278 PKSSKKFDILVTTPNRLIYLLKQDPPGIDLTSVEWLIVDESDKLFEDGKTGFRDQLASIF 337

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT   ++++  +  L N   + +   +S  ET+E   +   ++  K
Sbjct: 338 LACTSHKVRRAMFSATFAYDVEQWCKLNLDNVITVSIGARNSAVETVEQELLFVGSETGK 397

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +  +     ++F    +    L   L  +G +V  IH +  Q+ R   + +
Sbjct: 398 LLAMRELVKKGFNPP--VLVFVQSIERAKELFRELIYEGVNVDVIHADRTQQQRDNTVHS 455

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   
Sbjct: 456 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFT 515

Query: 351 KEDIKHIDAIEKLIEKK----VDWLNG--------DLSSLNPPLEKIDIAQ--HNHARKN 396
           ++D   + ++  +I++      +++ G            +  PLE+  I+        K 
Sbjct: 516 EDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPKYFLEKA 575

Query: 397 NPIPQKSTGFDRRKKNYSSQKS 418
               +K TG + +KK     KS
Sbjct: 576 KDKRKKVTGQNSKKKVTLEDKS 597


>gi|268568362|ref|XP_002640231.1| Hypothetical protein CBG12746 [Caenorhabditis briggsae]
 gi|187029335|emb|CAP31678.1| hypothetical protein CBG_12746 [Caenorhabditis briggsae AF16]
          Length = 631

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 133/400 (33%), Positives = 200/400 (50%), Gaps = 17/400 (4%)

Query: 2   DFADLGLSPKVVCAV-LDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F ++     ++  +    G V PT IQI+ IP+ L   D+ GIA TG+GKT +FVLP++
Sbjct: 191 SFLEMKFPKPLLQFLQKQKGIVTPTAIQIQGIPVALCGRDMIGIASTGSGKTMTFVLPLI 250

Query: 61  TILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGG 109
               +        R   P  LI+ P+RELA Q+ D   +            L   L IGG
Sbjct: 251 MFCIEQEVKLPFMRNEGPFGLIIVPSRELARQIYDLIIEMSEAIAKAGFPELRAGLCIGG 310

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +P   Q K   +G  +++ TPGR+ D   +  + +     LV+DEADRMLDMGF   I++
Sbjct: 311 VPIGEQAKDFRQGIHIVVATPGRLSDMLTKKIINLEVCRYLVLDEADRMLDMGFEDEIKS 370

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I       RQTLLFSATM  ++Q     F ++     +      A       +       
Sbjct: 371 IFYFFKSQRQTLLFSATMPKKIQF----FAKSALVKPIVVNVGRAGAASLNVLQELEFVR 426

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            +  L++ L   Q T    +IF  +K +V N+   L  +G  V +IHG  DQ  R   + 
Sbjct: 427 SENKLVRVLECLQKTSPKVLIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDRHAGIE 486

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F++    ++VA+D+A++GLD   + HV NFD+P   ENY+HRIGRTGR+GR G A T +
Sbjct: 487 AFRKNEKDVLVATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFI 546

Query: 350 AKE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
            K+ ++  +  +++L+ +    L   L  L    E I  A
Sbjct: 547 NKKSEMSVLSDLKQLLVEAGQELPEFLKMLAGDEEGIAPA 586


>gi|302307229|ref|NP_983823.2| ADL273Cp [Ashbya gossypii ATCC 10895]
 gi|299788899|gb|AAS51647.2| ADL273Cp [Ashbya gossypii ATCC 10895]
          Length = 623

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 128/397 (32%), Positives = 206/397 (51%), Gaps = 18/397 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    L   ++  +  A + KPTP+Q  ++P+V +  D+   AQTG+GKT  F+ P+L+
Sbjct: 147 EFTSPPLDELLLENIKLARFTKPTPVQKYSVPIVAKGRDLMACAQTGSGKTGGFLFPVLS 206

Query: 62  ILEKG-----------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                             R   P  ++L PTRELA Q+ D  +K+     +   ++ GG 
Sbjct: 207 QSFSNGPASTPDESGYYMRKAYPTAVVLAPTRELATQIFDEAKKFTYRSWVKPCVVYGGA 266

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN- 169
               Q ++LERG D+++ TPGR+ D   RGK+ + +++ LV+DEADRMLDMGF P I++ 
Sbjct: 267 DIRQQIRELERGCDLIVATPGRLNDLLERGKISLCSVKYLVLDEADRMLDMGFEPQIRHI 326

Query: 170 ---ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                      RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I    +    
Sbjct: 327 VEGCDMPTVENRQTLMFSATFPTDIQHLAADFLKDYIFLSVGRVGSTSENITQKVLHVED 386

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              +   L      +       ++F   K+    L   L  Q  S  AIHG+  Q  R +
Sbjct: 387 IDKRSVLLDLL---AASDGGLTLVFVETKRMADALTDFLIMQNLSATAIHGDRTQAERER 443

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L+ F+ G   ++VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A 
Sbjct: 444 ALAFFRTGRANVLVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGLAT 503

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
               + +   +  +  ++E+    +   LS +   + 
Sbjct: 504 AFFNRGNKNVVKELVDILEEANQEVPSFLSQIAKEMS 540


>gi|293409738|ref|ZP_06653314.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470206|gb|EFF12690.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 457

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 208/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNILPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W    ++S   PLE
Sbjct: 357 SDMLQIKLNWQTPPVNSSIVPLE 379


>gi|194214292|ref|XP_001915035.1| PREDICTED: similar to ATP-dependent RNA helicase DDX54 (DEAD box
           protein 54) (ATP-dependent RNA helicase DP97) (DEAD box
           RNA helicase 97 kDa) [Equus caballus]
          Length = 860

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 128/366 (34%), Positives = 197/366 (53%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   V+  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F++PM   
Sbjct: 78  FQSMGLSYPVFRGVMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFER 137

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R L+L PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 138 LKTHSAQTGA-RALVLSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHEN 196

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I   +P   QT+L
Sbjct: 197 PDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVL 256

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  +   E ++  F     + +K   LL  L  + 
Sbjct: 257 FSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSF-LLVREDAKAAVLLHLLRTAV 315

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K +   L   L  Q  S   I+  +DQ +R   L+ F  G    ++ +
Sbjct: 316 RPQDQTVVFVATKHHAEYLSELLTTQRVSCAHIYSALDQTARKINLAKFTHGKCSALIVT 375

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA +++ ++  +  
Sbjct: 376 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHL 435

Query: 363 LIEKKV 368
            + + +
Sbjct: 436 FLGRTL 441


>gi|74694613|sp|Q75B50|DED1_ASHGO RecName: Full=ATP-dependent RNA helicase DED1
          Length = 623

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 128/397 (32%), Positives = 206/397 (51%), Gaps = 18/397 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    L   ++  +  A + KPTP+Q  ++P+V +  D+   AQTG+GKT  F+ P+L+
Sbjct: 147 EFTSPPLDELLLENIKLARFTKPTPVQKYSVPIVAKGRDLMACAQTGSGKTGGFLFPVLS 206

Query: 62  ILEKG-----------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                             R   P  ++L PTRELA Q+ D  +K+     +   ++ GG 
Sbjct: 207 QSFSNGPASTPDESGYYMRKAYPTAVVLAPTRELATQIFDEAKKFTYRSWVKPCVVYGGA 266

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN- 169
               Q ++LERG D+++ TPGR+ D   RGK+ + +++ LV+DEADRMLDMGF P I++ 
Sbjct: 267 DIRQQIRELERGCDLIVATPGRLNDLLERGKISLCSVKYLVLDEADRMLDMGFEPQIRHI 326

Query: 170 ---ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                      RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I    +    
Sbjct: 327 VEGCDMPTVENRQTLMFSATFPTDIQHLAADFLKDYIFLSVGRVGSTSENITQKVLHVED 386

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              +   L      +       ++F   K+    L   L  Q  S  AIHG+  Q  R +
Sbjct: 387 IDKRSVLLDLL---AASDGGLTLVFVETKRMADALTDFLIMQNLSATAIHGDRTQAERER 443

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L+ F+ G   ++VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A 
Sbjct: 444 ALAFFRTGRANVLVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGLAT 503

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
               + +   +  +  ++E+    +   LS +   + 
Sbjct: 504 AFFNRGNKNVVKELVDILEEANQEVPSFLSQIAKEMS 540


>gi|198424291|ref|XP_002131481.1| PREDICTED: similar to ATP-dependent RNA helicase DDX3X (DEAD box
           protein 3, X-chromosomal) (Helicase-like protein 2)
           (HLP2) (DEAD box, X isoform) [Ciona intestinalis]
          Length = 733

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 151/469 (32%), Positives = 230/469 (49%), Gaps = 33/469 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    L   V   +    Y  PTP+Q   IP++  + D+   AQTG+GKTA+F+LP L+
Sbjct: 256 NFKQAELGEIVDDNLESCKYTVPTPVQKYAIPIIQSKRDLMACAQTGSGKTAAFLLPTLS 315

Query: 62  I--------------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                            +   R   P  L+L PTRELA+Q+ D   K+    ++   ++ 
Sbjct: 316 QLYTKGPGESLKATTSHQRGRRKLFPLALVLSPTRELASQIYDEARKFAYRSHVRPCVVY 375

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG    AQ + L+RG  +L+ TPGR++D   RGK+ +  I  +++DEADRMLDMGF P I
Sbjct: 376 GGADVGAQMRDLDRGCHILVATPGRLVDFIERGKVGLCYIRFVILDEADRMLDMGFEPQI 435

Query: 168 QNITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           + I      T     QTL+FSAT   E+Q ++ +FL N   + V    ST+         
Sbjct: 436 RRIVEQSDMTHKGERQTLMFSATFPKEIQILARDFLNNYIFLAVGRVGSTS--TNITQKV 493

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
            +    +K   L  L+ + D+    +IF   KK    L   L  + +   +IHG+  QR 
Sbjct: 494 VWVDEEEKHKFLLDLVNATDSKSLTLIFTETKKGADALDEFLYTRKYKSTSIHGDRTQRE 553

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDIP+V HV NFD+P+  + Y+HRIGRTGR G  G
Sbjct: 554 REEALLAFRTGEYPILVATAVAARGLDIPNVRHVINFDLPSDVDEYVHRIGRTGRVGNIG 613

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
            A +    +++  +  +       VD L      + P LE + +  +   +  +   + S
Sbjct: 614 LATSFFNNKNVNIVKDL-------VDLLIEASQEVPPWLENMAL-TYQKGKPRSSGKRFS 665

Query: 404 TGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAF 452
            GF  R  +Y  Q++    +      +  Q IQ       G+   MPAF
Sbjct: 666 AGFGSR--DYRQQQNRGGSRGGGNAGRGSQ-IQNRGTQGGGWG--MPAF 709


>gi|50286247|ref|XP_445552.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661437|sp|Q6FW42|DRS1_CANGA RecName: Full=ATP-dependent RNA helicase DRS1
 gi|49524857|emb|CAG58463.1| unnamed protein product [Candida glabrata]
          Length = 725

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 152/460 (33%), Positives = 236/460 (51%), Gaps = 19/460 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL LS  V+  + + GYVKP+PIQ  TIP+ L   D+   A TG+GKTA+F++P++ 
Sbjct: 207 TFNDLALSRPVMKGLSNLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 266

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            L    A+V   R ++L PTRELA QVAD  +K G+   NLT  L +GG+    Q + L+
Sbjct: 267 RLLYKPAKVASTRVIVLTPTRELAIQVADVGKKIGQFVSNLTFGLAVGGLNLRQQEQMLK 326

Query: 121 RGADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D++I TPGR +DH        ++++E+LVIDEADRML+ GF   +  I SL+P  RQ
Sbjct: 327 TRPDIVIATPGRFIDHIRNSASFNVDSVEVLVIDEADRMLEDGFQDELNEIMSLLPSKRQ 386

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSS--TAETIEHCFVATYAQYSKKCALLQQ 237
           TLLFSATM   ++++    L+ P RI ++ P    T  T E   +               
Sbjct: 387 TLLFSATMNSRIKQLISLSLKRPVRIMIDPPKQAATKLTQEFVRIRKRDHLKPSLLFNLI 446

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                +  K  ++F  +K     L   L   G +V  +HG++ Q  R+  ++ FK   + 
Sbjct: 447 RKLDPNGQKRIVVFVARKDMAHKLRIILGLLGMAVAELHGSLTQEQRLDSVNKFKSLQVP 506

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ +DLA+RGLDIP +  V N+D+P   E Y+HR+GRT RAGR G++ T V +   +  
Sbjct: 507 VLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSITFVGEASAERS 566

Query: 358 ---DAIE----------KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
              DAI           K + + VDW    +   N  +E +D    +   +     +   
Sbjct: 567 IVKDAIRGVNDSEIPGSKAVGRNVDW--NQVEETNKIVENMDQTVQDILVEEKEEKEILR 624

Query: 405 GFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLG 444
                KK  +  K    ++   K +  Q + ++ ++  +G
Sbjct: 625 AEMELKKGENLLKHKDEIQSRPKRTWFQSEKEKKNSKIMG 664


>gi|240172122|ref|ZP_04750781.1| putative ATP-dependent RNA helicase [Mycobacterium kansasii ATCC
           12478]
          Length = 504

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 145/448 (32%), Positives = 223/448 (49%), Gaps = 27/448 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LG+  ++V A+ + G   P  IQ  T+PL L   DV G A+TG GKT +F +P+L
Sbjct: 10  LSFAQLGVRDEIVRALREKGIEHPFAIQELTLPLALAGEDVIGQARTGMGKTFAFGVPLL 69

Query: 61  TILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             +    A       PR L++ PTREL  QV D+     K         +  +       
Sbjct: 70  QRITSDTAARPLTGTPRALVVVPTRELCLQVTDDLATAAKYLTAEETRRLSVVSIYGGRA 129

Query: 118 KLERGA------DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              +        DV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+ I 
Sbjct: 130 YEPQVEALRAGADVVVGTPGRLLDLSQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERIL 189

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
             +P  RQ++LFSATM D +  ++  F+  P  I    P S A           A    K
Sbjct: 190 RQIPAERQSMLFSATMPDPIITLARTFMVQPTHIRAEAPHSLAVHDTTEQFVYRAHALDK 249

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L+ ++LQ++D     I     K+    +   L+++GF+V A+HG++ Q +R K L  F
Sbjct: 250 VELVSRILQARDRGATMIFT-RTKRTAQKVADELKERGFAVGAVHGDLGQIAREKALKAF 308

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G A TLV  
Sbjct: 309 RGGDVNVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLVDW 368

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI-------PQKST 404
           +++     I+  +          L S   P E    + H +A  + P        P +++
Sbjct: 369 DELDRWTTIDTALG---------LGS-PDPAETYSNSPHLYAELSIPAEAAAAVGPPRAS 418

Query: 405 GFDRRKKNYSSQKSHIPLKESEKISKLQ 432
              RR  +   Q+S      + +  + +
Sbjct: 419 QPKRRATDQEGQQSVTARSGARRRQRTR 446


>gi|156089185|ref|XP_001611999.1| DEAD/DEAH box helicase domain containing protein [Babesia bovis]
 gi|154799253|gb|EDO08431.1| DEAD/DEAH box helicase domain containing protein [Babesia bovis]
          Length = 649

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 142/477 (29%), Positives = 230/477 (48%), Gaps = 38/477 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +++DLGLS  ++ AV D GY  P+ IQ K IP+ L+  D+   A+TG+GK+A+F++P L 
Sbjct: 126 NWSDLGLSRSLIKAVFDMGYKAPSIIQSKVIPVALEGKDLLATAETGSGKSAAFLIPTLQ 185

Query: 62  ILE-------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
            L              +G  +    + LIL PTRELAAQ  D F    +N      L+ G
Sbjct: 186 RLITAGVIKQKDVDLTRGGNQRVGTKALILLPTRELAAQCYDVFLALTQNLTQNGVLITG 245

Query: 109 GIPFEAQNKKLERGADVLICTP-GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           G+P + Q  KL R   ++  TP   +    N   + M+ IEI+V+DEADR+LD+GF   +
Sbjct: 246 GVPVKEQEAKLRRMPYIVFATPGKVLDIMLNSNCIHMDAIEIVVLDEADRLLDLGFKDEL 305

Query: 168 QNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
            +I  L    RQT+LFSAT+T+  +++    L NP  I+     + A+T          +
Sbjct: 306 AHILQLCNKERQTMLFSATLTEATKELVPVALVNPIYIKATPKITVAKT--LKCENIQLK 363

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
                      L SQ   K  I+F   K+         +  G     +HG++ Q  R + 
Sbjct: 364 SDDLREAAALYLCSQRYTKKTILFFQTKRAAHRNALVFQLAGLKSGELHGDLAQAKRFEQ 423

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           +  FK G +  ++AS+LA+RGLDIP +  V N  +P     ++HR+GRT R G  G A T
Sbjct: 424 IEKFKNGEVDFLMASELASRGLDIPGISAVINVHLPFDNVRFLHRVGRTARMGEEGTAIT 483

Query: 348 LVAKEDIKHIDAIEKLI--------EKKVDWLNGDLSSLNPPLEKID--IAQHNHARK-- 395
              +++   I ++ K I        ++K+      L +    +E+++  IA+   A K  
Sbjct: 484 FYTEKERSAIKSMMKSITDKGSNIDKQKIKLSGAALKNYKSKIEEMEPKIAELLAAEKVE 543

Query: 396 ------NNPIPQKSTGFDRRKKNYSSQKSHIPLKESE----KISKLQQDIQENDADS 442
                  N I   S+   R +  + S+K  +   ++E    K+  +    ++N+ + 
Sbjct: 544 KELRQCENAIKYGSSTEKRERIWFRSKKQKLEASKNELLQTKLRAITNRKKDNEHEP 600


>gi|328470391|gb|EGF41302.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus 10329]
          Length = 416

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 138/417 (33%), Positives = 221/417 (52%), Gaps = 16/417 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL P +V  +    Y +PTPIQ   IP VL   D+ G A TG+GKTA+F LP+L 
Sbjct: 9   TFADLGLIPTLVERLEALEYNQPTPIQSHAIPHVLDGRDMIGGANTGSGKTAAFSLPILQ 68

Query: 62  ILEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV--ALLIGGIPFEAQ 115
            + +       R      LIL PTRELA+QVA N + Y  +    +    + GG+    Q
Sbjct: 69  KILQQGESNDRRGNFVSHLILVPTRELASQVAYNVKSYSYHLRDKIKTVAVFGGVSVNPQ 128

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G D+++ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  I +L+P
Sbjct: 129 MLALRGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILALLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +QTLLFSAT  +++  ++++ L +P  +++ +  ++        V    + +    L+
Sbjct: 189 EKKQTLLFSATFPEKVTTLAQHLLNDPVEVQLQSAEASTLVQRVFSVNKGEKTAVLAHLI 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++        +  +IF N K    +L   L K+G +    HG+  Q +R ++L  FK G 
Sbjct: 249 KKHQW-----RQILIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKSGE 303

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           IQ+++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G   +L+  +D  
Sbjct: 304 IQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDDYH 363

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           H   IEK  + +++    +   +       D ++              TG  ++K+N
Sbjct: 364 HFKVIEKKNKFQLEREQVEGFEVED-----DQSEAYFLPMKPRAKPAGTGKKKKKRN 415


>gi|209809352|ref|YP_002264890.1| putative ATP-dependent RNA helicase RhlE [Aliivibrio salmonicida
           LFI1238]
 gi|208010914|emb|CAQ81319.1| putative ATP-dependent RNA helicase RhlE [Aliivibrio salmonicida
           LFI1238]
          Length = 442

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 142/431 (32%), Positives = 233/431 (54%), Gaps = 21/431 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGL   ++  + +  Y +PTPIQ + IP VL   D+   A TG+GKTA+F LP+L 
Sbjct: 22  NFTELGLITPLLARLTELEYQQPTPIQAQAIPSVLAGRDLIAGANTGSGKTATFALPILQ 81

Query: 62  ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113
            L + +       +      LIL PTRELA QVAD+ + Y  ++N  +    + GG+   
Sbjct: 82  QLHEDKPFSTKSGKGNYVTGLILVPTRELAKQVADSIKSYAVHFNGAIKTVAVFGGVSAN 141

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  G D+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  +  L
Sbjct: 142 TQMLALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELSALLDL 201

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  +QTLLFSAT  +++Q +++  L +P  I+V +  ++        V    + +    
Sbjct: 202 LPKQKQTLLFSATFPEQVQTLTQELLNDPIEIQVQSADASTLVQRVFTVNKGEKTALLAH 261

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L++Q        +  +IF N K +  +L   L K+G +    HG+  Q +R +IL  FK 
Sbjct: 262 LIKQNEW-----RQALIFVNAKNSCEHLADKLSKRGITAEVFHGDKGQGARTRILEAFKL 316

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I++++A+++AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G A +L+  ED
Sbjct: 317 GEIEVLIATNIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHED 376

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH-ARKNNPIPQKSTGFDRRKKN 412
             H   IEK  + K+     ++        ++D A  +  +    P+ +      +++KN
Sbjct: 377 YHHFKIIEK--KNKIRLEREEVEGF-----EVDEAVSDSLSDVEKPMAKPEGTGKKKRKN 429

Query: 413 YSSQKSHIPLK 423
            +S    + L+
Sbjct: 430 RASADEDVWLR 440


>gi|159469622|ref|XP_001692962.1| DEAD box RNA helicase [Chlamydomonas reinhardtii]
 gi|158277764|gb|EDP03531.1| DEAD box RNA helicase [Chlamydomonas reinhardtii]
          Length = 407

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 138/393 (35%), Positives = 210/393 (53%), Gaps = 8/393 (2%)

Query: 20  GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI----LEKGRARVRMPRT 75
            +V P+PIQ +  P++L   D+ GIA TG+GKT  F LPML       E G    + P  
Sbjct: 7   NFVAPSPIQAQCWPIILAGRDLIGIAATGSGKTLGFGLPMLRHIAAQREAGVVTGKGPFA 66

Query: 76  LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           +++ PTRELA Q+ +  E+ G    +    + GG+P   Q + L  G +V++ TPGR+ D
Sbjct: 67  VVMAPTRELALQINEVLEEAGSKCGVRTVCVYGGVPKHPQIQALRSGVEVVVGTPGRMED 126

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
             N G L +N I   V+DEADRMLD+GF P+I+ I +L    RQTL+FSAT    +QK++
Sbjct: 127 LLNDGALKLNQITYAVLDEADRMLDLGFEPHIRAIMNLTRADRQTLMFSATWPTAVQKLA 186

Query: 196 ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLLQSQDTMKNGIIFC 252
             FL +P ++ + +    A       V     +++      LLQQ   ++      IIF 
Sbjct: 187 VAFLSHPVKVTIGSQDLAASHSITQHVEVIEPHARDGRLLDLLQQYHGAKGRKNRVIIFV 246

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             KK    +   L ++G+   AIHG+I Q+ R   +  FK G + L++A+D+AARGLDIP
Sbjct: 247 LYKKEAPRVEQLLTRKGWKAGAIHGDISQQQRTDAVEKFKSGAVPLLIATDVAARGLDIP 306

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIEKLIEKKVDWL 371
           DV  V N+  P   E+Y+HRIGRTGRAG+ G A+T      D      +  ++ +    +
Sbjct: 307 DVEVVINYSFPLTTEDYVHRIGRTGRAGKTGVAYTFFCAGPDKPRAGELINVLREAGQEV 366

Query: 372 NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
             DL      ++K +   +    ++  +  K+T
Sbjct: 367 PADLLKFGTAVKKKESKMYGAHFRDVDVHAKAT 399


>gi|114667864|ref|XP_001173161.1| PREDICTED: ATP-dependent RNA helicase ROK1 isoform 3 [Pan
           troglodytes]
          Length = 507

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 114/442 (25%), Positives = 209/442 (47%), Gaps = 29/442 (6%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     ++ +++  VLDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 70  TFQQLDQEYKINSRLLQNVLDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 129

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L++   +      LI+ PTRELA+Q+     K  +        +    +  +   
Sbjct: 130 PILMQLKQPANKGFR--ALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFG 187

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++    +    ++  ++E LV+DE+D++ + G   +        
Sbjct: 188 PKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIF 247

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT   ++++  +  L N   + +   +S  ET+E   +   ++  K
Sbjct: 248 LACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSETGK 307

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +  +     ++F    +    L H L  +G +V  IH    Q+ R   + +
Sbjct: 308 LLAMRELVKKGFNPP--VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHS 365

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   
Sbjct: 366 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFT 425

Query: 351 KEDIKHIDAIEKLIEKK----VDWLNG--------DLSSLNPPLEKIDIAQHNH--ARKN 396
           ++D   + ++  +I++      +++ G            +  PLE+  I+        K 
Sbjct: 426 EDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPKCFLEKA 485

Query: 397 NPIPQKSTGFDRRKKNYSSQKS 418
               +K TG + +KK     KS
Sbjct: 486 KDKQKKVTGQNSKKKVALEDKS 507


>gi|302668010|ref|XP_003025583.1| hypothetical protein TRV_00223 [Trichophyton verrucosum HKI 0517]
 gi|291189698|gb|EFE44972.1| hypothetical protein TRV_00223 [Trichophyton verrucosum HKI 0517]
          Length = 714

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 105/406 (25%), Positives = 160/406 (39%), Gaps = 26/406 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL P ++  +   GY+ PTP+Q   IP VL  HD+  +AQTG+GKTA+F++P+L+
Sbjct: 247 SFEDAGLHPIMLNNIKLCGYIVPTPVQAYCIPAVLTGHDLIAVAQTGSGKTAAFLIPVLS 306

Query: 62  ILEKGRARVRMPRTL-------------------ILEPTRELAAQVADNFEKYGKNYNLT 102
            L     ++  PR                     I+ PTRELA Q+ D   +      L 
Sbjct: 307 KLMGKAKKLAAPRPDLGNGFNESLDAVRAEPLVLIVVPTRELATQIFDEARRLCYRSMLR 366

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
             ++ GG P   Q  +L++G D+LI TPGR++D   +  +L        I +    L   
Sbjct: 367 PCVIYGGGPSRDQRMELQKGCDILIATPGRLIDFMEKPNILSLCRVRYTIIDEADELLKS 426

Query: 163 FIPYIQNIT---SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
                         V           + T                           T  +
Sbjct: 427 DWDVEFTKILAGGDVNEDADHRYMMFSATFNKGCRQVARKFLANDYVRIRIGRVGSTHLN 486

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                              L         I+F N K     +   L   G    +IH + 
Sbjct: 487 VTQQFVWAEENMKKKCLYDLLMAMPPSRTIVFVNNKTQADLIDDFLFNMGLPSTSIHSDR 546

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPN----RAENYIHRIGR 335
            QR R   +  FK     +++A+ ++ARGLDI +V HV N+D+P+      + YIHRIGR
Sbjct: 547 TQREREDAIRAFKTAKSPILIATAVSARGLDIKNVMHVVNYDLPSVNHGGIDEYIHRIGR 606

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           T R G  G A +    ++      + K++ +    +   L S  PP
Sbjct: 607 TARIGNPGLATSFYNDKNSDIASDLVKILVESKQVIPDFLQSEVPP 652


>gi|297201135|ref|ZP_06918532.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
 gi|197713661|gb|EDY57695.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 504

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 125/358 (34%), Positives = 183/358 (51%), Gaps = 5/358 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L  ++  A+L  G   P PIQ  T+P  L   DV G  +TG+GKT +F LP+L  
Sbjct: 81  FADLDLPERLQAALLAEGVTTPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLPLLAR 140

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  RA  R P  L+L PTRELA QV D    Y +   L  A ++GG+    Q   L  G
Sbjct: 141 LDGQRAEPRHPLALVLVPTRELAQQVTDALTPYARALRLRAATVVGGMSIGRQASALRAG 200

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+VL+ TPGR+ D   RG   ++ + + V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 201 AEVLVATPGRLKDLIERGDCSLSQVTMTVLDEADQMTDMGFMPQVTALLDQVRPDGQRML 260

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++  N+L +P    V+             +  +  + +         +  
Sbjct: 261 FSATLDRNIDRLVRNYLHDPVVHSVDP-----SAGTVTTMDHHLLHVRDDDKHATATEIA 315

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F + K     L   L   G    A+HG   Q  R + L  FK+G + ++VA+
Sbjct: 316 ARDGRVIMFLDTKHAAERLAKHLLSVGVRASALHGGKSQPQRTRTLGQFKDGQVTVLVAT 375

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++AARG+ + DV  V NFD P   ++Y+HR GRT RAG  G   TLV     + +D +
Sbjct: 376 NVAARGIHVDDVDLVVNFDPPADHKDYLHRGGRTARAGESGTVVTLVLPHQRRSVDRL 433


>gi|126326113|ref|XP_001363225.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 668

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 117/392 (29%), Positives = 199/392 (50%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP- 58
            F  L   ++   + A+ + G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 175 SFTSLTNMVNENTLKAIAEMGFTNMTEIQHKSIRPLLEGRDILAAAKTGSGKTLAFLIPS 234

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  I++           LIL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 235 IELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK 294

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+L++GF   ++ I  L+P  
Sbjct: 295 LANGINIIVATPGRLLDHMQNTPGFMFKNLQCLVIDEADRILEVGFEEEMKQIIKLLPKR 354

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ +++  L+               T++          S+K  LL  
Sbjct: 355 RQTMLFSATQTRKVEDLAKISLKKEPLYVGVDDDKDTATVDGLEQGYVVCPSEKRFLLLF 414

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 415 TFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVMAIHGKQKQNKRTTTFFQFCNADSG 474

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
           +++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 475 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGINGR-GHALLILRPEELG 533

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + ++    +S +   LEK+
Sbjct: 534 FLRYLKQAKVPLSEFEFSWSKISDIQAQLEKL 565


>gi|114667862|ref|XP_511433.2| PREDICTED: ATP-dependent RNA helicase ROK1 isoform 4 [Pan
           troglodytes]
          Length = 599

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 114/442 (25%), Positives = 209/442 (47%), Gaps = 29/442 (6%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     ++ +++  VLDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 162 TFQQLDQEYKINSRLLQNVLDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 221

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L++   +      LI+ PTRELA+Q+     K  +        +    +  +   
Sbjct: 222 PILMQLKQPANKGFR--ALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFG 279

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++    +    ++  ++E LV+DE+D++ + G   +        
Sbjct: 280 PKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIF 339

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT   ++++  +  L N   + +   +S  ET+E   +   ++  K
Sbjct: 340 LACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSETGK 399

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +  +     ++F    +    L H L  +G +V  IH    Q+ R   + +
Sbjct: 400 LLAMRELVKKGFNPP--VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHS 457

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   
Sbjct: 458 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFT 517

Query: 351 KEDIKHIDAIEKLIEKK----VDWLNG--------DLSSLNPPLEKIDIAQHNH--ARKN 396
           ++D   + ++  +I++      +++ G            +  PLE+  I+        K 
Sbjct: 518 EDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPKCFLEKA 577

Query: 397 NPIPQKSTGFDRRKKNYSSQKS 418
               +K TG + +KK     KS
Sbjct: 578 KDKQKKVTGQNSKKKVALEDKS 599


>gi|332847931|ref|XP_001173155.2| PREDICTED: probable ATP-dependent RNA helicase DDX52 isoform 2 [Pan
           troglodytes]
          Length = 599

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 114/442 (25%), Positives = 209/442 (47%), Gaps = 29/442 (6%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     ++ +++  VLDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 162 TFQQLDQEYKINSRLLQNVLDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 221

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L++   +      LI+ PTRELA+Q+     K  +        +    +  +   
Sbjct: 222 PILMQLKQPANKGFR--ALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFG 279

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++    +    ++  ++E LV+DE+D++ + G   +        
Sbjct: 280 PKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIF 339

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT   ++++  +  L N   + +   +S  ET+E   +   ++  K
Sbjct: 340 LACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSETGK 399

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +  +     ++F    +    L H L  +G +V  IH    Q+ R   + +
Sbjct: 400 LLAMRELVKKGFNPP--VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHS 457

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   
Sbjct: 458 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFT 517

Query: 351 KEDIKHIDAIEKLIEKK----VDWLNG--------DLSSLNPPLEKIDIAQHNH--ARKN 396
           ++D   + ++  +I++      +++ G            +  PLE+  I+        K 
Sbjct: 518 EDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPKCFLEKA 577

Query: 397 NPIPQKSTGFDRRKKNYSSQKS 418
               +K TG + +KK     KS
Sbjct: 578 KDKQKKVTGQNSKKKVALEDKS 599


>gi|294947712|ref|XP_002785456.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
 gi|239899367|gb|EER17252.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
          Length = 695

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 128/394 (32%), Positives = 204/394 (51%), Gaps = 19/394 (4%)

Query: 2   DFADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F D G ++  +V  +   G+ +PTP+Q  +IP +  R D+   AQTG+GKT ++++P +
Sbjct: 207 QFNDGGEVAAAIVENIKRCGFDRPTPVQKYSIPTLTTRRDLMSCAQTGSGKTGAYLIPAI 266

Query: 61  TIL-----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
             +                R   P TLIL PTRELA+Q+ +   K+  N  +   ++ GG
Sbjct: 267 HNMLADGPPDATSSGDYGRRKAYPITLILSPTRELASQIHEEARKFCFNTGIRPVVVYGG 326

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q ++LERG D+L+ TPGR+ D   R ++ +  I++L+ DEADRMLDMGF P I+ 
Sbjct: 327 ADVRTQLRELERGCDILVATPGRLSDLMERFRVSLCQIKMLIFDEADRMLDMGFEPQIRR 386

Query: 170 ITSLVPFTRQTL-----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           I                +FSAT   E+Q+++ +FL++   + V    ST  +I+      
Sbjct: 387 IVEQEDMPSSRDGRQSAMFSATFPREIQQLARDFLKDYIYLTVGRVGSTHGSIKQIMRYV 446

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                     L ++L+ Q      ++F   K+    + + L +  +   +IHG+  Q  R
Sbjct: 447 DENSK--LRDLYRVLEEQTEEGLTLVFVETKRKADEIENMLRRDRYPATSIHGDRSQWER 504

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + L  FK G + ++VA+D+AARGLDI  V  V N+D+PN  ++Y+HRIGRTGRAG  G 
Sbjct: 505 EEALKAFKSGELPILVATDVAARGLDISHVNLVINYDLPNNIDDYVHRIGRTGRAGNLGT 564

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           A   V +     +  +  L+E+    +     SL
Sbjct: 565 AIAFVNEGSKPILRDLWTLLEENKQEIPQWFMSL 598


>gi|50551521|ref|XP_503234.1| YALI0D24497p [Yarrowia lipolytica]
 gi|74689555|sp|Q6C7X8|DBP10_YARLI RecName: Full=ATP-dependent RNA helicase DBP10
 gi|49649102|emb|CAG81435.1| YALI0D24497p [Yarrowia lipolytica]
          Length = 926

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 132/414 (31%), Positives = 212/414 (51%), Gaps = 48/414 (11%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLS  V+  +   G+ +PTPIQ KTIPLVL+  DV G+A+TG+GKTA+FVLPML 
Sbjct: 103 SFAGLGLSQLVLKNIARKGFKQPTPIQRKTIPLVLEGKDVVGMARTGSGKTAAFVLPMLE 162

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+   A+V   R +IL P+RELA Q     + +    +L +A+L+GG   E Q K +  
Sbjct: 163 KLKVHSAKVGA-RAVILSPSRELALQTLKVVKDFSAGTDLRLAMLVGGDSLEEQFKMMMS 221

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D++I TPGR L      +L + ++E +  DEADR+ ++GF   +  + + +P  RQTL
Sbjct: 222 NPDIIIATPGRFLHLKVEMELSLASVEYICFDEADRLFELGFGEQMNELLASLPSNRQTL 281

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV------------------- 222
           LFSAT+   L + ++  L +P  + ++  +   E +E  F                    
Sbjct: 282 LFSATLPKTLVEFAKAGLHDPILVRLDAETKLPEHLEMTFFAVKENQRDACLAFILKEVI 341

Query: 223 ----------------------------ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
                                           +  K             + K+ I+FC  
Sbjct: 342 QMPFATPEQLKELERLDERAIDDGERDEDRKQKRPKFKKERLPPAHQLPSEKSTIVFCPT 401

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K +V  +   L+  G++V  I+G +DQ +R   L  F+ G   ++V +D+AARG+D+P +
Sbjct: 402 KHHVEYVIVLLQTLGYAVSYIYGTLDQHARKNQLYRFRTGKTSILVVTDVAARGIDVPVL 461

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            +V N+ +P   + +IHR+GRT RAG  G A++++   DI ++  +E  + +K+
Sbjct: 462 ANVINYSLPPSPKVFIHRVGRTARAGNRGWAYSIIKDNDIPYLLDLEVFLGRKL 515


>gi|227503665|ref|ZP_03933714.1| possible ATP-dependent RNA helicase [Corynebacterium accolens ATCC
           49725]
 gi|227075701|gb|EEI13664.1| possible ATP-dependent RNA helicase [Corynebacterium accolens ATCC
           49725]
          Length = 435

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 130/407 (31%), Positives = 203/407 (49%), Gaps = 8/407 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            FA+LGL  +VV  + D G  +  PIQ   IP VL   DV G   TG+GKT +F LP + 
Sbjct: 3   TFAELGLPQRVVHVLNDQGITEAFPIQAAAIPDVLAGKDVLGRGPTGSGKTFTFGLPTLA 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +   G +    PR ++L PTRELA Q+    ++      L V  ++GG+      + L 
Sbjct: 63  RLAGSGASTPGHPRAVVLAPTRELATQIQQRLDEPATALGLRVLAVVGGVNINHHIRSLA 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R  D+L+ TPGR  D   +G+L  + ++I  +DEAD+M DMGF+P ++ + +  P T Q 
Sbjct: 123 RPVDLLVATPGRAQDLIAQGRLSFDKVQITTLDEADQMADMGFLPQVRKLLNYTPPTGQR 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++ K+ E FL +P        ++  E++ H       + ++   +++    
Sbjct: 183 LLFSATLDGDVNKLVEQFLHDPVVHSTAPVTAAVESMSHHLFFVGDRPARNEVVMR---- 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K  V      L + G +   +HG+  Q +R + +S F + +I ++V
Sbjct: 239 IAARAGKTIMFMRTKHGVDRQVKKLRRVGINAYPLHGDKGQGARTRAISGFADRSIPVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV  V + D P   + Y+HR GRT R G  G   TLV  E    + A+
Sbjct: 299 ATDIAARGIDIADVSLVVHVDPPAEHKAYLHRAGRTARGGATGTVVTLVTDEQRSEVAAL 358

Query: 361 EKLIE---KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
            K       + D  + D  +  P L  +  A+  H     P  Q  +
Sbjct: 359 IKKAGVNATEYDISHRDNPAGAPELRTVTGARKPHGPALPPPGQDGS 405


>gi|89100489|ref|ZP_01173351.1| hypothetical protein B14911_05646 [Bacillus sp. NRRL B-14911]
 gi|89084832|gb|EAR63971.1| hypothetical protein B14911_05646 [Bacillus sp. NRRL B-14911]
          Length = 436

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 139/427 (32%), Positives = 216/427 (50%), Gaps = 19/427 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L P ++ AV   G+ +PT IQ + IP++L+     G +QTGTGKT S++LP+L 
Sbjct: 5   KFERYELKPFIIEAVKKLGFYEPTEIQERLIPIILKGDSAIGQSQTGTGKTHSYILPILQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADN----FEKYGKNYNLTVALLIGGIPFEAQNK 117
            ++  R  V+     I  PTRELA Q+        E+   +  ++  L IGG   +   +
Sbjct: 65  KIDPSRQGVQAV---ITAPTRELATQIHKEVLKVTEQADGDEEISSKLFIGGTDKQRTIE 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+    V++ TPGRI D      LL++   +LV+DEAD MLDMGF+  +  +   +P  
Sbjct: 122 KLKVQPQVVVGTPGRINDLVKENALLVHTASMLVVDEADLMLDMGFLEDVDQVAGKMPEK 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+ ++L+   + +L+NPK +++      A  IEH  + +     K    +  
Sbjct: 182 LQMLVFSATIPEKLKPFLKKYLENPKFVQIEPKQIAAAKIEHYLLPSKH---KNKTEIVF 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      I+F N KK    +  +L ++G  V  IHG++  R R K++    +   Q
Sbjct: 239 RALEAFNPYLAIVFTNTKKKADEVADALMQKGLKVGRIHGDLSPRERKKMMKQIMDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P   + YIHR+GRT RAG  G A T+    D   +
Sbjct: 299 YIVATDLAARGIDIQGISHVINYELPTDLDFYIHRVGRTARAGSSGIALTIYDTSDEDAL 358

Query: 358 DAIEKL-IE-KKVDWLNGDLSSLNPPLEKI-------DIAQHNHARKNNPIPQKSTGFDR 408
           + +EKL IE K VD   G+   L     +        +I  H  +R   P   K     +
Sbjct: 359 NRLEKLGIEFKHVDLQKGEWIDLGDRNRRKKRQRQTDEIDAHAQSRVKKPKNVKPGYKKK 418

Query: 409 RKKNYSS 415
            ++   S
Sbjct: 419 IQREVES 425


>gi|330844673|ref|XP_003294242.1| hypothetical protein DICPUDRAFT_159210 [Dictyostelium purpureum]
 gi|325075337|gb|EGC29238.1| hypothetical protein DICPUDRAFT_159210 [Dictyostelium purpureum]
          Length = 599

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 108/391 (27%), Positives = 192/391 (49%), Gaps = 7/391 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++FA+L +      ++ +  + K TPIQ K+I  +L+  D+ G A+TG+GKT +F++P +
Sbjct: 119 IEFANLPIHDNTKKSIEEMTFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLIPAI 178

Query: 61  TILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKK 118
            IL K   + R     +I+ PTRELA Q+    ++  K +  T  ++I G      + + 
Sbjct: 179 EILVKSGFKPRNGTGVIIISPTRELALQIYGVAKELLKYHTQTHGIIIGGAAKKPEEERL 238

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +    ++      +    N    +  N++ LVIDEADR+L++GF   +  I  L+P  R
Sbjct: 239 EKGVNLLVATPGRLLDHLQNTKGFITKNLKCLVIDEADRILEVGFEEEMHKIVKLLPKNR 298

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT T +++ +++  L N              T+E          S++  LL   
Sbjct: 299 QTMLFSATQTRKVEDIAKVSLNNSPVYVGVDDEREISTVEGLEQGYVVCPSERRFLLLYT 358

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +    V      L      V  +HG   Q+ R      F      +
Sbjct: 359 FLKRNLNKKVIVFLSSCNAVKYTAELLNYIDIPVLELHGRQKQQKRTNTFYEFVNAEKGI 418

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  +D P+  + YIHR+GRT R  G+ G+A   +  +++  +
Sbjct: 419 LICTDVAARGLDIPSVDWIIQYDPPDDPKEYIHRVGRTARGVGKKGRALLFLLPKELGFL 478

Query: 358 DAIEKLIEKKV---DWLNGDLSSLNPPLEKI 385
             + KL +  +   ++    ++++   LEK+
Sbjct: 479 KYL-KLAKVPLNEYEFPKSKIANVQDQLEKV 508


>gi|297809151|ref|XP_002872459.1| hypothetical protein ARALYDRAFT_911240 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297318296|gb|EFH48718.1| hypothetical protein ARALYDRAFT_911240 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 620

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 132/489 (26%), Positives = 213/489 (43%), Gaps = 35/489 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGLS +V+ A+ +     PT IQ   IP V++R  V   + TG+GKT +++LP++ 
Sbjct: 113 NFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQ 172

Query: 62  ILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           ++ +       + + R PRT++L PTREL+ QV    +    +      L+ GG     Q
Sbjct: 173 LMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQ 232

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI----- 170
              L    D+++ TPGRIL H   G ++  +I  LV+DEAD M D GF P I+       
Sbjct: 233 EDSLNNAIDMVVGTPGRILQHIEEGNMVYGDITYLVLDEADTMFDRGFGPEIRKFLAPLN 292

Query: 171 ---TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
                      QT+L +ATMT  +QK+ +   Q  + +  +T         H F+     
Sbjct: 293 QRALKTNDQGFQTVLVTATMTTAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLSGG 352

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             K  ALLQ L  S       ++FCN   +   + H L +   S    HG +    R++ 
Sbjct: 353 EDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHFLSENQISTVNYHGEVPADQRVEN 412

Query: 288 LSNFKEGTIQLMVASDLAARGLDIP-DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
           L  FK+                 +  DV HV  FD P  + +Y+HR GRT R G  GK  
Sbjct: 413 LKKFKDEEGDCPTLVCTDLAARGLDLDVDHVVMFDFPKNSIDYLHRTGRTARMGAKGKVT 472

Query: 347 TLVAKEDIKHIDAIEKLI--EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           +LV+++D      IE+ +   + ++ L  D    +    +I   +    ++   + ++  
Sbjct: 473 SLVSRKDQMLAARIEEAMRNNESLESLTTDNVRRDAARSQITQEKGRSVKQMREVSKQRN 532

Query: 405 GFD-----------------RRKKNYSSQKSHIPLKESEKISKLQQDI-QENDADSLGFR 446
             D                 R+  + S  K        EK SK ++ I +   + S+  R
Sbjct: 533 SRDKPSSSPPARLTGGKTPVRKSSSSSFSKPRKASSPPEKSSKPKRKILKTVGSRSIAAR 592

Query: 447 GNMPAFMLP 455
           G   +   P
Sbjct: 593 GKTGSDRRP 601


>gi|73953220|ref|XP_865308.1| PREDICTED: similar to Probable ATP-dependent helicase DDX41
           (DEAD-box protein 41) (DEAD-box protein abstrakt
           homolog) isoform 2 [Canis familiaris]
          Length = 590

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 111/389 (28%), Positives = 173/389 (44%), Gaps = 48/389 (12%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++     ++  +   G   PTPIQI+ IP +L   D+ GIA TG+GKT  F LP++ 
Sbjct: 182 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
              +   R+       P  LI+ P+RELA Q     E Y +            AL IGG+
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
             + Q + +  G  +++ TPGR++D   +  + ++    L +DEADRM+DMGF   I+ I
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 361

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++                                    ++K
Sbjct: 362 FSYFKGQRQTLLFSATMPKKI----------------------------------QNFAK 387

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
              +    +         +    + + V     +                   R K +  
Sbjct: 388 SALVKPVTINVGRAGAASLDVIQEVEYVKE--EAKMVYLLECLQKTPPPVSEERTKAIEA 445

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG   ++VA+D+A++GLD P + HV N+D+P   ENY+HRIGRTGR+G  G A T + 
Sbjct: 446 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 505

Query: 351 KE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           K  D   +  ++ L+ +    +   L  L
Sbjct: 506 KACDESVLMDLKALLLEAKQKVPPVLQVL 534


>gi|229824032|ref|ZP_04450101.1| hypothetical protein GCWU000282_01336 [Catonella morbi ATCC 51271]
 gi|229786386|gb|EEP22500.1| hypothetical protein GCWU000282_01336 [Catonella morbi ATCC 51271]
          Length = 447

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 122/446 (27%), Positives = 221/446 (49%), Gaps = 19/446 (4%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
             L L+P +  A+   G+ + TP+Q   IP  L+  ++   +QTG+GK+ SF++P+   L
Sbjct: 7   ESLELAPFIKEALGQLGFSRLTPVQEAVIPYALKGRNLIVQSQTGSGKSHSFLIPIFQQL 66

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE--- 120
           +    +V++    I  P+RELA Q+    ++        + ++      + Q +  +   
Sbjct: 67  DPSLDQVQVV---ITAPSRELATQLYQAAKQLASTSPEPLRVVHYMGGTDKQRQVDKLQA 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRI D      L +   +I+V+DEAD  +D+GF+  + +I S +P   Q 
Sbjct: 124 GQPQVVIGTPGRIYDLMASHALHVQTAKIMVVDEADMTMDLGFLQVVDDIASRMPEDLQL 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT+  +L+     ++ NP+ I++      A  I++  + T  +             
Sbjct: 184 MVFSATIPQQLEVFLNKYVTNPEFIQIEPQEVLASKIDNYLINTKGRDRSALVYDLL--- 240

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       ++FCN KK    L   L+++G  V +IHG++  R R +++   K+   Q +V
Sbjct: 241 TMGHPFLALVFCNTKKYAAELTQCLKERGLKVASIHGDLTPRERKRVMRQIKDLEYQYVV 300

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASDLAARG+DIP +  V N ++P   E ++HR+GRTGR    G A+T +  +D + I  +
Sbjct: 301 ASDLAARGIDIPGISMVINTELPKELEFFVHRVGRTGRNQLAGTAYTFMTPDDDRAIVEL 360

Query: 361 E-KLIE-KKVDWLNGDLSSLNP---PLEKIDIAQHNHARKNNPIPQKSTGFD-----RRK 410
           E K I+ ++VD + G++  +      LE+ D  Q         +  ++         +RK
Sbjct: 361 EAKGIDFQQVDLVKGEIRPVQSRHRRLERTDTKQDKEDPTVRAMINRNKKKKVKPGYKRK 420

Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQ 436
            NY  ++        +K ++ +Q  +
Sbjct: 421 LNYQIKEHRQKEARKQKRAERRQARK 446


>gi|259155174|ref|NP_001158829.1| ATP-dependent RNA helicase DDX54 [Salmo salar]
 gi|223647616|gb|ACN10566.1| ATP-dependent RNA helicase DDX54 [Salmo salar]
          Length = 875

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 127/372 (34%), Positives = 199/372 (53%), Gaps = 2/372 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   V+  GY  PTPIQ KTIP++L   D+  +A+TG+GKTA+F++PM   
Sbjct: 79  FQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVILDGKDMVAMARTGSGKTAAFLVPMFEK 138

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+  +A+    R LIL PTRELA Q     ++ GK   L  AL++GG   + Q   L   
Sbjct: 139 LKVPQAQTGA-RALILTPTRELALQTMKFTKELGKFTGLKTALILGGDRMDDQFAALHEN 197

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I   +P  RQTLL
Sbjct: 198 PDIIIGTPGRLMHVVMEMNLKLQSVEYVVFDEADRLFEMGFADQLQEIIRRLPDNRQTLL 257

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L  P  I ++  S  +E +            K   LL  L    
Sbjct: 258 FSATLPKLLVEFARAGLTEPVLIRLDVDSKLSELL-KLSFFHLRMDDKPALLLHLLRNVA 316

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  ++F   K +V  L   L  +G     I+  +DQ +R   +  F      +++ +
Sbjct: 317 KPQEQTVVFVATKHHVEYLKELLSSEGVECAYIYSALDQTARKINIGKFVHRKAMVLIVT 376

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP + +V N++ P++A+ ++HR+GR  RAGR G A++LV  ++I  +  +  
Sbjct: 377 DVAARGIDIPLLDNVINYNFPSKAKLFLHRVGRVARAGRCGAAYSLVCTDEIPFVYDLHL 436

Query: 363 LIEKKVDWLNGD 374
            + + +     D
Sbjct: 437 FLGRPLQLATPD 448


>gi|45184660|ref|NP_982378.1| AAL164Cp [Ashbya gossypii ATCC 10895]
 gi|74695973|sp|Q75F95|DRS1_ASHGO RecName: Full=ATP-dependent RNA helicase DRS1
 gi|44980006|gb|AAS50202.1| AAL164Cp [Ashbya gossypii ATCC 10895]
          Length = 734

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 157/484 (32%), Positives = 242/484 (50%), Gaps = 40/484 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L LS  V+  +   GY KP+PIQ  TIP+ L   DV   A TG+GKTA+F++P++ 
Sbjct: 220 TFNSLSLSRPVLKGLAALGYTKPSPIQGATIPIALLGKDVIAGAVTGSGKTAAFMIPIIE 279

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            L    A++   R L+L PTRELA QVAD  +K GK    LT  L +GG+    Q + L+
Sbjct: 280 RLLYKPAKIASTRVLVLTPTRELAIQVADVGKKLGKFVSGLTFGLAVGGLNLRQQEQALK 339

Query: 121 RGADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D++I TPGRI+DH        ++++E+LVIDEADRML+ GF   +  I SL+P  RQ
Sbjct: 340 LRPDIVIATPGRIIDHIRNSASFSVDSVEVLVIDEADRMLEDGFQDELNEIMSLIPSKRQ 399

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSS--TAETIEHCFVATYAQYSKKCALLQQ 237
           TLLFSATM   ++++    L+ P RI ++ P       T E   +               
Sbjct: 400 TLLFSATMNSRIKQLISLSLKKPVRIMIDPPKQAANKLTQEFVRLRKREHLKPALLYHLL 459

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                   K  ++F  +K+    L   L   G     +HG++ Q  R++ ++NFK   + 
Sbjct: 460 RKLDSTGQKRIVVFVARKEVAHRLRVILGLLGMKAGELHGSLTQEQRLQSVNNFKSLDVP 519

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE----- 352
           ++V +DLA+RGLDIP +  V N+D+P   E Y+HR+GRT RAGR GK+ TLV +      
Sbjct: 520 VLVCTDLASRGLDIPKIEVVINYDMPKTYEIYLHRVGRTARAGREGKSVTLVGESTQERS 579

Query: 353 -----------------------DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
                                  D K ++ I KL++ K D + G++       ++I  A+
Sbjct: 580 IVKDAIKSVDGSKGSGRACGRVVDWKQVEEIHKLVQAKEDVI-GEILEEEKQEKEILRAE 638

Query: 390 HNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP-------LKESEKISKLQQDIQENDADS 442
               +  N +  K     R ++ +   +S          L +++K++  ++  +E     
Sbjct: 639 MEIRKGENMLKFKEEINARPRRTWFQSESEKKNSSILQALSKNKKVTNSKKRKREEAQQE 698

Query: 443 LGFR 446
           +G R
Sbjct: 699 VGSR 702


>gi|225320657|dbj|BAH29724.1| DEAD box ATP-dependent RNA helicase [Dicyema japonicum]
          Length = 423

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 104/394 (26%), Positives = 181/394 (45%), Gaps = 16/394 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++  + + G+  P+ +Q + IP  +   D+   A++G GKTA +VL  L  
Sbjct: 44  FRDFLLKPELLRTIQECGFEHPSEVQHQCIPQAILNMDIVCQAKSGMGKTAVYVLSTLHQ 103

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++    V               ++             + VA+  GGIP +    KL + 
Sbjct: 104 LDENCTNVDTLVLCHTRELAFQISKEY--ERFSKYLPEVKVAVCFGGIPMQLDISKLRKN 161

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFIPYIQNITSLVPFTRQTL 181
             V++ TPGRIL   +   L ++     V+DE D++         +Q+I    P ++Q +
Sbjct: 162 PQVVVGTPGRILQLVSENHLNLSKCHHFVVDECDKVLDKADMRSDVQDIFRKTPHSKQVI 221

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+   ++ V   F+++P  I ++  S         + A   + +K        L  
Sbjct: 222 MFSATLPKSIRPVCLKFMKDPLEIYIDDESKLTLHGLQQYYAKIDENAKTR--ALSNLLE 279

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   IIF       + L   L +  F V  IH  + Q  R+K    FK+   +++VA
Sbjct: 280 SLSVNQTIIFVRTVNRCIALTEVLAQANFEVICIHRGMQQEERLKRYQLFKDFEKRILVA 339

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAI 360
           +DL  RG+DI  V  VFN+D+P+ A++++HR+ R GR G  G A T V+   D+  ++ +
Sbjct: 340 TDLFGRGMDIERVNVVFNYDMPDDADSFLHRVARAGRFGTKGIAVTFVSNSTDMGVLNEV 399

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           +K  E  +  +           EKID   +N  +
Sbjct: 400 QKRFEVNISEMP----------EKIDPVSYNERK 423


>gi|48146547|emb|CAG33496.1| DDX19 [Homo sapiens]
          Length = 479

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL M
Sbjct: 93  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLVEPPQNLIAQSQSGTGKTAAFVLAM 152

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      + P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 153 LSQVEPAN---KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 209

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 210 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 269

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        L
Sbjct: 270 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 327

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 328 YGATTIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 387

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 388 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 448 SMNILNRIQEHFNKKIERLDTD 469


>gi|7023040|dbj|BAA91812.1| unnamed protein product [Homo sapiens]
          Length = 491

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 113/442 (25%), Positives = 209/442 (47%), Gaps = 29/442 (6%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     ++ +++  +LDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 54  TFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 113

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L++   +      LI+ PTRELA+Q+     K  +        +    +  +   
Sbjct: 114 PILMQLKQPANKGFR--ALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFG 171

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++    +    ++  ++E LV+DE+D++ + G   +        
Sbjct: 172 PKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIF 231

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT   ++++  +  L N   + +   +S  ET+E   +   ++  K
Sbjct: 232 LACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSETGK 291

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +  +     ++F    +    L H L  +G +V  IH    Q+ R   + +
Sbjct: 292 LLAVRELVKKGFNPP--VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHS 349

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   
Sbjct: 350 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFT 409

Query: 351 KEDIKHIDAIEKLIEKK----VDWLNG--------DLSSLNPPLEKIDIAQHNH--ARKN 396
           ++D   + ++  +I++      +++ G            +  PLE+  I+        K 
Sbjct: 410 EDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPKCFLEKA 469

Query: 397 NPIPQKSTGFDRRKKNYSSQKS 418
               +K TG + +KK     KS
Sbjct: 470 KDKQRKVTGQNSKKKVALEDKS 491


>gi|256076508|ref|XP_002574553.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238659762|emb|CAZ30786.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 463

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 104/387 (26%), Positives = 182/387 (47%), Gaps = 13/387 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA +GL   ++  +   G+ KP+ IQ KTI  ++   D+   AQ+GTGKTA+F +  L 
Sbjct: 26  TFASMGLKDNLLKGIYAYGFEKPSLIQQKTIKQIILGRDLIAQAQSGTGKTATFSIGTLQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV-ALLIGGIPFEAQNKKLE 120
            +      +   + L+L PTRELA Q+           ++   A   G        ++L+
Sbjct: 86  NI---LPEICQIQVLVLAPTRELAVQIHHVMSSLSDYLSIRCVACCGGRNNTMQMARELD 142

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  V++ TPGR+L+   +G + +N +  LV+DEAD ML+ G    ++ I   +P     
Sbjct: 143 KGVHVVVGTPGRVLELLRQGNIRLNKLRSLVLDEADEMLNRGLHDQLEEIYRRLPSHTNL 202

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--------ETIEHCFVATYAQYSKKC 232
               +     +   +    ++ +  +  T +              +           +  
Sbjct: 203 NNKKSVNCQIVIISATMLKEHLELFQNLTSNPVCVLVPRDELSLSDLQQFYIDVGSEEWK 262

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                 L S   +   ++F N ++ V  L   L+++GF+V A HG++DQ  R  ++  F+
Sbjct: 263 FEALNDLFSSVCVSQTVVFVNTRRKVEWLASQLKREGFTVAAAHGDLDQSQRESVMKQFR 322

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK- 351
            G  +++++SD+ ARG+D+  VG V NFD+P     Y+HRIGR+GR GR G A + +A  
Sbjct: 323 SGECRILISSDMWARGIDVQTVGLVVNFDLPMNTSEYLHRIGRSGRFGRTGLAVSFIANA 382

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           E+ K +  I    +  +      L  +
Sbjct: 383 EERKQLLEICNYYQIAIPPAPARLDKM 409


>gi|328768447|gb|EGF78493.1| hypothetical protein BATDEDRAFT_13134 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 443

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 106/393 (26%), Positives = 190/393 (48%), Gaps = 18/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F DLGL   ++  +   GY +P+ IQ K +PL+L     ++ G +Q GTGKTA+FVL M
Sbjct: 56  SFEDLGLHENLLKGIYGMGYQRPSKIQAKALPLLLMNPPKNMIGQSQAGTGKTAAFVLTM 115

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           LT ++     ++ P+ + L P RELA Q+ DN  + GK   +T +  I     +    + 
Sbjct: 116 LTRVDPS---IQAPQAICLAPARELARQILDNAREMGKYTTITTSHAIKDSIKKD---EK 169

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++            R          ++ +  + +   G       + +L+P   Q
Sbjct: 170 VTSQIIIGTPGTVADLIKRRALDCRQIKIFVLDEADNMLDQQGLGDQSIRVKNLMPKGCQ 229

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT ++ +++ +  F  N   I +     + ++I+  ++   ++  K   L    +
Sbjct: 230 LVLFSATFSETVRQFAVKFAPNANSISLRQEELSVDSIKQFYMDCKSEEHKAEVLCA--I 287

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   IIF  ++ +   L + +  QG +V A+HG  +   R K + +F+EG  +++
Sbjct: 288 YGLLTIGQSIIFVRKRSDADMLKNKMISQGHAVSALHGKHEAEDRDKAMDDFREGRSKVL 347

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           + +++ ARG+DI  V  V N+DVP        +E Y+HRIGRTGR GR G +   V   +
Sbjct: 348 ITTNVLARGIDILQVNLVINYDVPLDMNNRPDSETYLHRIGRTGRFGRQGVSINFVHNDK 407

Query: 353 DIKHIDAIEKLIEKKVDWLN-GDLSSLNPPLEK 384
             + +  IEK + +++  +   D  S+   L+K
Sbjct: 408 SYEEMKVIEKYLGREIVRVPTDDYMSIEKILKK 440


>gi|331266730|ref|YP_004326360.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus oralis Uo5]
 gi|326683402|emb|CBZ01020.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus oralis Uo5]
          Length = 447

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 131/452 (28%), Positives = 203/452 (44%), Gaps = 43/452 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +V A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKKFQFKNYIVEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +   +  +
Sbjct: 61  QQLDETSDSVQAV---ITAPSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  VIDEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVIDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +          
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 237 --TQLMQPYLAMIFVNTKTRADELHAYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL-------------------------IEKKVDWLNGDLSSL---------NPPLE 383
             +EKL                          EKK D L+ ++  L             +
Sbjct: 355 RELEKLGIKFTPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKKKKVKPGYKK 414

Query: 384 KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           KI  A     RK      ++ G   RK    +
Sbjct: 415 KIQWAVDEKRRKTKRAENRARGRAERKAKRQT 446


>gi|269104578|ref|ZP_06157274.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268161218|gb|EEZ39715.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 409

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 135/406 (33%), Positives = 219/406 (53%), Gaps = 10/406 (2%)

Query: 1   MDFADLGLSPKVVCAV-LDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M F+ L LSP ++ A+  +     PT IQ   IP +++  DV  +AQTG+GKT ++ LP+
Sbjct: 1   MSFSTLPLSPSLIHALPNELN--TPTDIQRHAIPALVKHQDVLALAQTGSGKTYAYGLPL 58

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L  ++  + +++    LIL PTREL  QV  +     +   +  A+L GGI  E Q + L
Sbjct: 59  LQQIDPSQPKIQA---LILVPTRELTTQVHQSLNTIAEKMAIRTAILCGGISQEQQEETL 115

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++I T GR+LD  ++G++ +++I+  V+DEADR+LDMGF P IQ I   +P  RQ
Sbjct: 116 NSQPQLVIATTGRLLDALSKGQVSLSHIKSWVLDEADRLLDMGFWPDIQKIIQQLPAKRQ 175

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT+ ++L+ +++  L  P RIE    +S  +TI             +  +     
Sbjct: 176 TALFSATLPEQLESLTQEVLFKPVRIEAQKTNSVVDTISEQLYLVNKGSKPQALIALLKQ 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++F   + N   LC  L K G    A+HG+ +Q  R +IL++FK   + ++
Sbjct: 236 YPTQ---QTLVFIGARDNADALCKRLMKAGVQAAALHGHKEQTEREQILADFKAKKLNVV 292

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+ ARG+ I  +  V NFD+P+ A  Y+HR+GRTGRAG +G A +LV   + + + A
Sbjct: 293 IATDVLARGIHIEQLPLVINFDLPSNAATYVHRVGRTGRAGNNGLALSLVCHGETEFLTA 352

Query: 360 IEKLIEKKVDWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           I +L ++ ++  N D     + P       +    + N    QK +
Sbjct: 353 IRQLTQRPLELHNLDGFPVTDKPTTGESKRKPRDKQANRRTAQKRS 398


>gi|156057455|ref|XP_001594651.1| eukaryotic initiation factor 4A [Sclerotinia sclerotiorum 1980]
 gi|160395529|sp|A7EGL7|IF4A_SCLS1 RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|154702244|gb|EDO01983.1| eukaryotic initiation factor 4A [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 398

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 134/377 (35%), Positives = 210/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P+++  V   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 26  SFDTMNLKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     V+  + LIL PTRELA Q+       G   N+     IGG       K L+ 
Sbjct: 86  KLDPN---VKQCQALILAPTRELAQQIQKVVVAIGDFMNVECHACIGGTSVRDDMKALQD 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I  L+P + Q +
Sbjct: 143 GPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 203 LLSATMPQDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEDWKLDT--LSDLYE 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A
Sbjct: 261 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIA 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  ED++ +  IE
Sbjct: 321 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTAEDVRMMREIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 381 QFYSTQIEEMPMNVADL 397


>gi|119578005|gb|EAW57601.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52, isoform CRA_c [Homo
           sapiens]
          Length = 491

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 113/442 (25%), Positives = 209/442 (47%), Gaps = 29/442 (6%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     ++ +++  +LDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 54  TFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 113

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L++   +      LI+ PTRELA+Q+     K  +        +    +  +   
Sbjct: 114 PILMQLKQPANKGFR--ALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFG 171

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++    +    ++  ++E LV+DE+D++ + G   +        
Sbjct: 172 PKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIF 231

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT   ++++  +  L N   + +   +S  ET+E   +   ++  K
Sbjct: 232 LACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSETGK 291

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +  +     ++F    +    L H L  +G +V  IH    Q+ R   + +
Sbjct: 292 LLAVRELVKKGFNPP--VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHS 349

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   
Sbjct: 350 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFT 409

Query: 351 KEDIKHIDAIEKLIEKK----VDWLNG--------DLSSLNPPLEKIDIAQHNH--ARKN 396
           ++D   + ++  +I++      +++ G            +  PLE+  I+        K 
Sbjct: 410 EDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPKCFLEKA 469

Query: 397 NPIPQKSTGFDRRKKNYSSQKS 418
               +K TG + +KK     KS
Sbjct: 470 KDKQKKVTGQNSKKKVALEDKS 491


>gi|27697141|gb|AAH41785.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Homo sapiens]
 gi|119578004|gb|EAW57600.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52, isoform CRA_b [Homo
           sapiens]
          Length = 599

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 113/442 (25%), Positives = 209/442 (47%), Gaps = 29/442 (6%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     ++ +++  +LDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 162 TFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 221

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L++   +      LI+ PTRELA+Q+     K  +        +    +  +   
Sbjct: 222 PILMQLKQPANKGFR--ALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFG 279

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++    +    ++  ++E LV+DE+D++ + G   +        
Sbjct: 280 PKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIF 339

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT   ++++  +  L N   + +   +S  ET+E   +   ++  K
Sbjct: 340 LACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSETGK 399

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +  +     ++F    +    L H L  +G +V  IH    Q+ R   + +
Sbjct: 400 LLAVRELVKKGFNPP--VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHS 457

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   
Sbjct: 458 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFT 517

Query: 351 KEDIKHIDAIEKLIEKK----VDWLNG--------DLSSLNPPLEKIDIAQHNH--ARKN 396
           ++D   + ++  +I++      +++ G            +  PLE+  I+        K 
Sbjct: 518 EDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPKCFLEKA 577

Query: 397 NPIPQKSTGFDRRKKNYSSQKS 418
               +K TG + +KK     KS
Sbjct: 578 KDKQKKVTGQNSKKKVALEDKS 599


>gi|289342912|ref|NP_001166066.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [Bos taurus]
 gi|284794217|gb|ADB93367.1| DEAD box polypeptide 3 Y-linked short isoform [Bos taurus]
 gi|296470425|gb|DAA12540.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [Bos taurus]
          Length = 660

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 136/428 (31%), Positives = 217/428 (50%), Gaps = 30/428 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+
Sbjct: 181 SFSDVAMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 62  ILEKGRA---------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
            +                    R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 241 QIYTDGPGEALKAVKESGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVLPCVV 300

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 301 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 360

Query: 167 IQNITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I             T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 361 IRRIIEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 420

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L        D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 421 WVEEADKRSFLLDLLNATGTDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P   E Y+HRIGRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNL 538

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           G A +   + +I     +  L+ +    +   L ++          +H++   N    ++
Sbjct: 539 GLATSFFNERNINISKDLLDLLVEAKQEVPSWLENM--------AYEHHYKSSNRGRSRR 590

Query: 403 -STGFDRR 409
            S GF  R
Sbjct: 591 FSGGFGAR 598


>gi|284794215|gb|ADB93366.1| DEAD box polypeptide 3 Y-linked long isoform [Bos taurus]
          Length = 661

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 136/428 (31%), Positives = 217/428 (50%), Gaps = 30/428 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+
Sbjct: 181 SFSDVAMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 62  ILEKGRA---------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
            +                    R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 241 QIYTDGPGEALKAVKESGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVLPCVV 300

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 301 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 360

Query: 167 IQNITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I             T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 361 IRRIIEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 420

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L        D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 421 WVEEADKRSFLLDLLNATGTDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P   E Y+HRIGRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNL 538

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           G A +   + +I     +  L+ +    +   L ++          +H++   N    ++
Sbjct: 539 GLATSFFNERNINISKDLLDLLVEAKQEVPSWLENM--------AYEHHYKSSNRGRSRR 590

Query: 403 -STGFDRR 409
            S GF  R
Sbjct: 591 FSGGFGAR 598


>gi|254786531|ref|YP_003073960.1| cold-shock DEAD box protein A dbpA [Teredinibacter turnerae T7901]
 gi|237683925|gb|ACR11189.1| cold-shock DEAD box protein A dbpA [Teredinibacter turnerae T7901]
          Length = 604

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 142/371 (38%), Positives = 216/371 (58%), Gaps = 7/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++  V   GY +P+PIQ  TIP +++  DV G+AQTGTGKTA+F LP+L  
Sbjct: 12  FADLNLPSSLLDTVRKLGYERPSPIQAATIPALIEGRDVIGMAQTGTGKTAAFALPILAK 71

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           ++ G    + P+ L+L PTRELA QV++ F+ Y  N      L I  G     Q + L+R
Sbjct: 72  IKSG---SKNPQALVLCPTRELAIQVSEAFQSYAANIPNFHVLPIYGGQDMRTQLRGLQR 128

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+LDH +R  L ++ +  +V+DEAD ML MGF   ++ I    P   Q  
Sbjct: 129 GVQVIVGTPGRLLDHLDRRSLDLSELHTVVLDEADEMLRMGFNEDVEAILKKTPGNHQIA 188

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +++V++ +L+NP  +++ T  +T E IE  +         +       ++ 
Sbjct: 189 LFSATMPPPIRRVADTYLKNPVEVKIETSVTTNENIEQFYWLVSGTNKLEALTRILEVED 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            + M   IIF   K + V+L   L  +GFS   ++G+++Q  R + +   K G + +++A
Sbjct: 249 FEGM---IIFVRTKNSTVDLAERLNARGFSAAPLNGDMNQALRERTIEQLKGGKLDMIIA 305

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLD+  + HV NFD+P   E Y+HRIGRTGR GR GKA   VA  + + + +IE
Sbjct: 306 TDVAARGLDVERISHVLNFDIPYDDEAYVHRIGRTGRGGRTGKAILFVAPRERRMLRSIE 365

Query: 362 KLIEKKVDWLN 372
           K   +K+  + 
Sbjct: 366 KTTRQKITEMQ 376


>gi|224551506|gb|ACN54195.1| Ddx3y [Bos taurus]
          Length = 635

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 136/428 (31%), Positives = 217/428 (50%), Gaps = 30/428 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+L+
Sbjct: 181 SFSDVAMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 62  ILEKGRA---------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
            +                    R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 241 QIYTDGPGEALKAVKESGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVLPCVV 300

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 301 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 360

Query: 167 IQNITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I             T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 361 IRRIIEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 420

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L        D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 421 WVEEADKRSFLLDLLNATGTDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P   E Y+HRIGRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNL 538

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           G A +   + +I     +  L+ +    +   L ++          +H++   N    ++
Sbjct: 539 GLATSFFNERNINISKDLLDLLVEAKQEVPSWLENM--------AYEHHYKSSNRGRSRR 590

Query: 403 -STGFDRR 409
            S GF  R
Sbjct: 591 FSGGFGAR 598


>gi|323359563|ref|YP_004225959.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
 gi|323275934|dbj|BAJ76079.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
          Length = 482

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 139/420 (33%), Positives = 220/420 (52%), Gaps = 3/420 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+   +V A+   G V   PIQ +TIPL L   D+ G A+TGTGKT  F +P+  
Sbjct: 3   TFAELGVDQDIVDALASKGIVDAFPIQEQTIPLGLPGQDIIGQAKTGTGKTFGFGIPV-- 60

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +   G       + LI+ PTRELA QV ++ +    N   +V  + GG  +E Q  +L+ 
Sbjct: 61  VQRLGLNPEPGVKALIVVPTRELAVQVYEDMDMLTSNRPTSVVAIYGGKAYEGQIDQLKA 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++D  N+  L ++N   +V+DEAD+MLD+GF+  I+ I S VP  R T 
Sbjct: 121 GAQIVVGTPGRLIDLANQRLLDLSNATEVVLDEADKMLDLGFLADIEKIFSKVPPVRHTQ 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +  ++  F+ NP  +  N P           +   A    K  ++ ++LQS
Sbjct: 181 LFSATMPGPIVALARRFMSNPIHMRANDPDEGLTQANIKHLVYRAHSLDKDEVIARILQS 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      +IF   K+    L   L  +GF+  A+HG++ Q +R + ++ FK G   +++A
Sbjct: 241 EGRE-KAVIFTRTKRAAQKLVDELGDRGFNAAAVHGDMSQEARERSMAAFKAGKKDVLIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+ DV HV N  +P+  + Y+HR GRTGRAG+ G A T V  +D+     I 
Sbjct: 300 TDVAARGIDVNDVTHVINHTIPDDEKTYLHRAGRTGRAGKTGIAVTFVDWDDLHKWALIN 359

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           + +E          SS       +DI +    R        +   +++ +   ++    P
Sbjct: 360 RALEFGQPEPTETYSSSPHLYTDLDIPEGTKGRLVTAPKAVAPKVEKKTETPDAEGERAP 419


>gi|322706990|gb|EFY98569.1| DEAD-box helicases & Helicase superfamily domain-containing protein
           [Metarhizium anisopliae ARSEF 23]
          Length = 397

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 133/377 (35%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L  +++  V   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 25  SFDDMSLKAELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQ 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+  + LIL PTRELA Q+       G   N+     IGG       K L+ 
Sbjct: 85  KIDPT---VKQCQALILAPTRELAQQIQKVVVAIGDFMNVECHACIGGTSVRDDMKALQD 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + +++ V+DEAD ML  GF   I +I  L+P + Q +
Sbjct: 142 GPQVVVGTPGRVHDMIQRRFLKTDAMKMFVLDEADEMLSRGFTDQIYDIFQLLPQSTQVV 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 202 LLSATMPQDVLEVTTRFMRDPVRILVKKDELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A
Sbjct: 260 TVTITQAVIFCNTRRKVDWLTEKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIA 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  ED++ +  IE
Sbjct: 320 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTAEDVRMMREIE 379

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 380 QFYSTQIEEMPMNVADL 396


>gi|226306587|ref|YP_002766547.1| ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
 gi|229493625|ref|ZP_04387410.1| ATP-dependent RNA helicase RhlE [Rhodococcus erythropolis SK121]
 gi|226185704|dbj|BAH33808.1| putative ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
 gi|229319586|gb|EEN85422.1| ATP-dependent RNA helicase RhlE [Rhodococcus erythropolis SK121]
          Length = 500

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 153/477 (32%), Positives = 231/477 (48%), Gaps = 31/477 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +V A+  +G   P PIQ  TIP VL   DV G   TG+GKT +F LPML 
Sbjct: 16  SFVDLGIPAVMVHALRRSGIDAPFPIQSATIPDVLAGRDVLGRGATGSGKTLAFGLPMLV 75

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G ++   PR L+L PTRELA Q+    +       L VA  +GG+P + Q   L R
Sbjct: 76  RLKGGASKRNRPRGLVLAPTRELAIQIHKALDDAATEIGLRVANAVGGVPIKRQADILAR 135

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+LI TPGR+LD   +  ++++++ I  IDEAD M DMGFI  +  I    P   Q L
Sbjct: 136 GVDLLIATPGRLLDLLEQKSVILDDVVITTIDEADHMADMGFIDEVAKILDTTPKDGQRL 195

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++  +   +L+NP       P +T  T+EH  +       +           
Sbjct: 196 LFSATLDGKVDDLVAGYLRNPASHSTAPPVATVSTMEHHLLFVDRDDKRSVVAHIA---- 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K  V  L   L   G S  A+HG   Q +R K L++F +GT  ++VA
Sbjct: 252 -SRAGRTIMFVKTKHGVDRLAQQLHLIGVSAGALHGGKTQNNRTKTLASFSDGTTPVLVA 310

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ + DV  V + D P  A++Y+HR GRT RAG  G   T+V  E+    D++E
Sbjct: 311 TDVAARGIHVDDVTLVVHVDPPAEAKDYLHRAGRTARAGESGVVVTIVTDEER---DSVE 367

Query: 362 KLIEK---------------KVDWLNGDLSSLNPPLEKIDI---AQHNHAR---KNNPIP 400
           KL ++               ++  + G +     P+E  D     +H   R   +++   
Sbjct: 368 KLTKQAGIKVHGVRVRPDDLELTRITGAMEPTGIPVEAPDTTVAVKHTAKRGRQEHDTAG 427

Query: 401 QKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQ--ENDADSLGFRGNMPAFMLP 455
           + + G   +K       S   + + + + K++ D       ++ L  +G  P    P
Sbjct: 428 RTAAGGRMKKDGDKRAASSRRVTDPKSVKKIRADGTPVPTRSERLASKGLTPRRGAP 484


>gi|194743072|ref|XP_001954024.1| GF18065 [Drosophila ananassae]
 gi|190627061|gb|EDV42585.1| GF18065 [Drosophila ananassae]
          Length = 678

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 113/392 (28%), Positives = 199/392 (50%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            F+ L   +S   + AV + G+ + T IQ K++  +L+  D+ G AQTG+GKT +F++P 
Sbjct: 184 SFSSLKGAVSEATLRAVQEMGFTEMTEIQAKSLTPLLKGRDLVGAAQTGSGKTLAFLIPA 243

Query: 60  LTILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K R   R     +I+ PTREL+ Q     ++   +++ T  L++GG   + +++K
Sbjct: 244 VELINKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEK 303

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G ++L+ TPGR +    N    L  N++ L+IDE DR+L++GF   ++ I +L+P  
Sbjct: 304 LGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKR 363

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T ++  +S+  L+          +    T++          S+K  L+  
Sbjct: 364 RQTMLFSATQTAKIDALSKLALKAEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLF 423

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V             V +IHG   Q  R      F      
Sbjct: 424 TFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESG 483

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
           +++ +D+AARGLDIP V  +  +D P+    YIHR+GRT R  G  G A  L+  E++  
Sbjct: 484 ILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELGF 543

Query: 357 IDAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
           +  + K  +  ++        ++ +   LEK+
Sbjct: 544 LRYL-KAAKVPLNEFEFSWQKIADIQLQLEKL 574


>gi|16415782|emb|CAC87273.1| Dbp5 protein [Chironomus tentans]
          Length = 472

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 103/393 (26%), Positives = 172/393 (43%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  L L P+++  V   GY  P+ IQ   +P ++     ++   +Q+GTGKTA+F L M
Sbjct: 86  TFEALHLKPELLRGVYAMGYNNPSKIQETALPTLIADPPQNMIAQSQSGTGKTAAFTLAM 145

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           LT ++        P+ L L PT ELA Q  +   +  K                A+  KL
Sbjct: 146 LTRVDTA---KDFPQVLCLSPTYELAIQTGEVAARMAKFCPEIRIRYAVRGEDIARGTKL 202

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +                 L      ++ +    +   G       +   +    Q
Sbjct: 203 TDHVIIGTPGKVLDWSLKFHAFDLSKITVFVLDEADVMIAQQGHQDQCIRLHKHLSKKCQ 262

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT   ++ + +E  + +P  I +       + I+  +V    Q  K        +
Sbjct: 263 MMLFSATYEKKVMEFAEYIVPSPITIRLKKEEEVLDNIKQYYVRCPNQDIKY--QAIANI 320

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   IIFC+ +K    L   + ++G SV  + G +    R+ +L  F+EG  +++
Sbjct: 321 YGVITIGQAIIFCHTRKTAGWLASKMAQEGHSVGVLSGELTVEQRLAVLDRFREGHEKVL 380

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           + +++ +RG+DI  V  V NFD+P         E Y+HRIGRTGR G+HG A  LV +++
Sbjct: 381 ITTNVLSRGIDIEQVNIVVNFDLPVDQTGRADCETYLHRIGRTGRFGKHGIAINLVDSEQ 440

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
            +K    IE+   KK+  L+ + S     +EKI
Sbjct: 441 SMKVCRDIERHFGKKIMLLDAENSD---EIEKI 470


>gi|67623541|ref|XP_668053.1| helicase [Cryptosporidium hominis TU502]
 gi|54659242|gb|EAL37829.1| helicase [Cryptosporidium hominis]
 gi|323509341|dbj|BAJ77563.1| cgd8_3900 [Cryptosporidium parvum]
 gi|323510329|dbj|BAJ78058.1| cgd8_3900 [Cryptosporidium parvum]
          Length = 427

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 106/378 (28%), Positives = 170/378 (44%), Gaps = 5/378 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ DAG+  P+ +Q +TIP  +   D+   A++G GKTA FVL +L  
Sbjct: 46  FRDFFLKPELIRAIGDAGFEHPSEVQHETIPHAITGVDILCQAKSGMGKTAVFVLSILQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LER 121
           L        +    I            +         N+   ++ GGIP +         
Sbjct: 106 LNPDEESKNVECICIGHTRELAFQVKNEFDRFSKYLKNVKPQVVYGGIPIQKDIDMLSNS 165

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFIPYIQNITSLVPFTRQT 180
             ++LI TPGRI+    + KL+   I   V+DE D+    +     +Q I    P  +Q 
Sbjct: 166 TPNILIGTPGRIIALIRQKKLVTEGIAHFVLDECDKCLESLDMRKDVQEIFMSTPRKKQV 225

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSATMT E++ V   F+QNP  I V+  +         +     +  K        L 
Sbjct: 226 MMFSATMTKEIRDVCRKFMQNPVEIFVDDETKLTLHGLLQYYVKLGESEKNR--KLNDLL 283

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      IIF         L   L +  F    IH  + Q+ R+     FK    ++MV
Sbjct: 284 DQLEFNQVIIFVKSVSRAQALHKLLTECSFPSICIHAALSQQERISRYQQFKNFEKRIMV 343

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+DL  RG+DI  V  V N+D+P   ++Y+HR+GR GR G  G A T+V+ + D + ++ 
Sbjct: 344 ATDLFGRGIDIERVNIVINYDMPENTDSYLHRVGRAGRFGTKGLAITMVSSQTDSQVLND 403

Query: 360 IEKLIEKKVDWLNGDLSS 377
           ++   E  +  +   + +
Sbjct: 404 VQSRFEVNIAEMPNQIDT 421


>gi|66361130|ref|XP_627282.1| Sub2p like superfamily II helicase involved in snRNP biogenesis
           [Cryptosporidium parvum Iowa II]
 gi|46228851|gb|EAK89721.1| Sub2p like superfamily II helicase involved in snRNP biogenesis
           [Cryptosporidium parvum Iowa II]
          Length = 430

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 106/378 (28%), Positives = 170/378 (44%), Gaps = 5/378 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ DAG+  P+ +Q +TIP  +   D+   A++G GKTA FVL +L  
Sbjct: 49  FRDFFLKPELIRAIGDAGFEHPSEVQHETIPHAITGVDILCQAKSGMGKTAVFVLSILQQ 108

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LER 121
           L        +    I            +         N+   ++ GGIP +         
Sbjct: 109 LNPDEESKNVECICIGHTRELAFQVKNEFDRFSKYLKNVKPQVVYGGIPIQKDIDMLSNS 168

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFIPYIQNITSLVPFTRQT 180
             ++LI TPGRI+    + KL+   I   V+DE D+    +     +Q I    P  +Q 
Sbjct: 169 TPNILIGTPGRIIALIRQKKLVTEGIAHFVLDECDKCLESLDMRKDVQEIFMSTPRKKQV 228

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSATMT E++ V   F+QNP  I V+  +         +     +  K        L 
Sbjct: 229 MMFSATMTKEIRDVCRKFMQNPVEIFVDDETKLTLHGLLQYYVKLGESEKNR--KLNDLL 286

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      IIF         L   L +  F    IH  + Q+ R+     FK    ++MV
Sbjct: 287 DQLEFNQVIIFVKSVSRAQALHKLLTECSFPSICIHAALSQQERISRYQQFKNFEKRIMV 346

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+DL  RG+DI  V  V N+D+P   ++Y+HR+GR GR G  G A T+V+ + D + ++ 
Sbjct: 347 ATDLFGRGIDIERVNIVINYDMPENTDSYLHRVGRAGRFGTKGLAITMVSSQTDSQVLND 406

Query: 360 IEKLIEKKVDWLNGDLSS 377
           ++   E  +  +   + +
Sbjct: 407 VQSRFEVNIAEMPNQIDT 424


>gi|195053518|ref|XP_001993673.1| GH20986 [Drosophila grimshawi]
 gi|193895543|gb|EDV94409.1| GH20986 [Drosophila grimshawi]
          Length = 689

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 114/392 (29%), Positives = 198/392 (50%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L   +S   + A+ + G+ + T IQ K++  +L+  D+ G AQTG+GKT +F++P 
Sbjct: 196 SFASLKGAVSEATLRAIAEMGFSEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPA 255

Query: 60  LTILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K     R     +I+ PTREL+ Q     ++   +++ T  L++GG   + +++K
Sbjct: 256 VELINKLHFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEK 315

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L RG ++L+ TPGR +    N    L  N++ L+IDE DR+L++GF   ++ I +L+P  
Sbjct: 316 LGRGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKR 375

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT TD +  +S+  L+          S    T++          S+K  L+  
Sbjct: 376 RQTMLFSATQTDRIDALSKLALKKEPIYVGVHDSQETATVDGLEQGYIVCPSEKRLLVLF 435

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V             V +IHG   Q  R      F      
Sbjct: 436 TFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESG 495

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
           +++ +D+AARGLDIP V  +  +D P+    YIHR+GRT R  G  G A  ++  E++  
Sbjct: 496 ILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLMLRPEELGF 555

Query: 357 IDAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
           +  + K  +  ++        ++ +   LEK+
Sbjct: 556 LRYL-KAAKVPLNEFEFSWQKIADIQLQLEKL 586


>gi|156044094|ref|XP_001588603.1| hypothetical protein SS1G_10150 [Sclerotinia sclerotiorum 1980]
 gi|154694539|gb|EDN94277.1| hypothetical protein SS1G_10150 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 573

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 103/409 (25%), Positives = 178/409 (43%), Gaps = 8/409 (1%)

Query: 2   DFADLGLSPKVVCAV-LDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F++L LS K + A+  D  +   T IQ + IP +L   DV G A+TG+GKT SF++P +
Sbjct: 97  KFSELNLSDKTMKALTEDMKFDTMTEIQRRGIPPLLAGRDVLGAAKTGSGKTLSFLIPAV 156

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVAD--NFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +L   R + R    +I+       A        E    +      ++ G        K 
Sbjct: 157 EMLHSLRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIVMGGANRRAEAEKL 216

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++    ++      +    N    +  N++ LVIDEADR+L+ GF   ++ I  ++P   
Sbjct: 217 VKGVNLLIATPGRLLDHLQNTQGFIFKNLKALVIDEADRILEAGFEDEMKQIVKVLPKDD 276

Query: 179 QTLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +  + FSAT T +++ ++   L+               T+E          S K  LL  
Sbjct: 277 RQTMLFSATQTTKVEDLARISLRPGPLYINVDNKKEHSTVEGLEQGYVVCDSDKRFLLLF 336

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  I+F +    V      L      V  +HG   Q+ R      F      
Sbjct: 337 SFLKRNLKKKIIVFFSSCACVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQG 396

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKH 356
            ++ +D+AARGLDIPDV  V  FD P+   +YIHR+GRT R     G++   +   ++  
Sbjct: 397 TLICTDVAARGLDIPDVDWVIQFDPPDDPTDYIHRVGRTARGNDGKGRSLLFLQPSEVGF 456

Query: 357 IDAIE--KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           +  ++  ++   + ++    + ++   L K+ IAQ+ +  K+     KS
Sbjct: 457 LTHLKTARIPVVEFEFPAAKIVNIQSQLSKL-IAQNYYLNKSAKEGYKS 504


>gi|127513728|ref|YP_001094925.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126639023|gb|ABO24666.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 408

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 155/415 (37%), Positives = 235/415 (56%), Gaps = 12/415 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L L   +  A+    + + T IQ + IPLVL   D+   AQTGTGKTA+F LP+L
Sbjct: 1   MLFSQLSLPAPLQQALEALAFSEATQIQAEAIPLVLSGVDLMASAQTGTGKTAAFALPIL 60

Query: 61  TILE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             L    +     + PR L+L PTRELA QV      + +  +L+  L+ GG+  EAQ +
Sbjct: 61  AKLMGLAQAEGSDKQPRALVLVPTRELALQVHQGISDFARFTSLSAGLVYGGVSIEAQCQ 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L  G D+++ TPGR+LD   RG   ++ +  LV DEADRMLDMGF   I  + +L+P  
Sbjct: 121 QLAAGVDLIVATPGRLLDLHRRGAAKLDGVAQLVFDEADRMLDMGFADEIAELMALLPSE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT+ D++  +S  +L+ PKRI V+         +      YA  S++   L  
Sbjct: 181 RQTLLFSATLDDKVLALSHRWLKQPKRIAVSP---QNSASQDVEQRVYAVDSERKFALLS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L ++   +  ++F  +K     L   L +QG    A HG++ Q +R ++L++F+ G I+
Sbjct: 238 HLINKGDWQRVLVFSRKKVAADKLAARLCEQGIMAKAFHGDLGQGAREQVLADFRRGEIK 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+AARG+DI  + +V N+++P  A++Y+HRIGRTGRAG+ G A TL  +ED   +
Sbjct: 298 VLVATDVAARGIDIESLDYVVNYELPYVAQDYVHRIGRTGRAGKQGVAVTLYCEEDALLL 357

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           + IE L++K++   WL G      P L K D     + +       K  G   R+
Sbjct: 358 EEIEALLDKRLPQQWLPG----FEPDLTKADPNPRRNGKAAQKRRAKRRGQGGRR 408


>gi|296392647|ref|YP_003657531.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus
           rotundus DSM 44985]
 gi|296179794|gb|ADG96700.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM
           44985]
          Length = 495

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 145/437 (33%), Positives = 233/437 (53%), Gaps = 10/437 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+ P++V ++  AG      IQ + +PL L  HD+ G A+TG GKT +F +P+L 
Sbjct: 9   SFAELGVHPEIVASLAAAGKHNAFAIQEQALPLALGGHDLIGQARTGMGKTLAFGIPLLQ 68

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQ------VADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            + +  A   +PR L++ PTREL  Q       A    K        +  L GG P+E Q
Sbjct: 69  RVAEAAAE-DIPRALVVVPTRELCLQVTNDLVDACKQLKLSDGRPTRIVSLYGGRPYEGQ 127

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              LE+G DV++ TPGR+LD + RG L +N I +LV+DEAD MLD+GF+P ++ I + +P
Sbjct: 128 IATLEKGVDVVVGTPGRLLDLWGRGNLKLNAIRMLVLDEADEMLDLGFLPDVEKIMAKLP 187

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +QT+LFSAT+   +  ++  F+  P  I   +  + A           A    K  L+
Sbjct: 188 TGKQTMLFSATIPGPVLTLARTFMTQPTHIRAESHDTAAVHERTTQHVYRAHALNKDELV 247

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            + LQ++      I     K++   L   L ++GFS  ++HG++ Q +R + LS F++G 
Sbjct: 248 SRFLQAEGRGTTMIFT-RTKRSAGKLADELVERGFSAGSLHGDMSQGAREEALSGFRKGK 306

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I+++V +D+AARG+DI  + HV N+  P   + Y+HRIGRTGRAGR G A TLV  ED+ 
Sbjct: 307 IEILVCTDVAARGIDIDGITHVINYTCPEDEKVYVHRIGRTGRAGRTGIAITLVDWEDLP 366

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR--KNNPIPQKSTGFDRRKKNY 413
             + I   +           S+       + I + +  R     P P ++   +R ++  
Sbjct: 367 RWEHINTALGLNHAEPPETYSNSPHIYTDLGIPEGSTGRLTPAQPAPPRAERRERGERPG 426

Query: 414 SSQKSHIPLKESEKISK 430
               S  P+++ +++ +
Sbjct: 427 RRGDSPKPVRDRQRVRR 443


>gi|298711833|emb|CBJ32858.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 488

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 111/382 (29%), Positives = 181/382 (47%), Gaps = 17/382 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF  LGL   +V A+ + G+  P+ IQ K IP +L   ++   A TG+GKT ++++P++
Sbjct: 18  MDFTGLGLLDDLVDAMEEFGFDSPSKIQRKAIPQILNGGNIVFAASTGSGKTLAYLMPLI 77

Query: 61  TI----------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                         +   + + PR ++L PTRELA QV +  ++  ++   +   ++GG 
Sbjct: 78  QQLKVEEAQAEEGGESIRQTKRPRAIVLVPTRELAMQVLEVAKRLSRSCKFSSCGVVGGE 137

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN- 169
            +  Q ++L    D+++ TPGR+L H   G   M+    +V+DE D ML  GF   I+  
Sbjct: 138 DYGKQRQRLAGTVDIVVGTPGRLLKHHEAGNFFMSKANYVVVDEVDTMLTQGFAADIEKL 197

Query: 170 -----ITSLVPFTRQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
                         Q +  +AT+T  ++K + E+   +  R                 + 
Sbjct: 198 NRPLLANPNRRDMAQFIFVTATLTKAVRKLLGEDGDYSKVRQVETRDVHHTLPSLRHVMI 257

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
                 K  AL+    Q     K  ++FCN  K+       L +      + HG +    
Sbjct: 258 DIKGRDKMSALIDIAQQHLKDFKRTLVFCNTVKSCRAAEFGLREVDVKALSYHGEVPSDE 317

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R   L  FK G  + +V +D+A+RGLD+PDV HV  FD P    +Y+HR GRT R G  G
Sbjct: 318 RSSNLERFKAGQAKYLVCTDIASRGLDMPDVDHVVMFDFPLNPIDYLHRSGRTARMGAKG 377

Query: 344 KAFTLVAKEDIKHIDAIEKLIE 365
           +  +L+AK D+    AIE+ ++
Sbjct: 378 RVTSLLAKRDLVLAAAIEQAVQ 399


>gi|238881797|gb|EEQ45435.1| ATP-dependent RNA helicase SUB2 [Candida albicans WO-1]
          Length = 433

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 167/375 (44%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q   IP  +   DV   A++G GKTA FVL  L  
Sbjct: 51  FRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQ 110

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+     +         E   ++  + A   +                     + K  + 
Sbjct: 111 LDPVPGEISTLVICHTRELAYQIRNEYARFSKYMPDVKTDVFYGGTPIKRDIEKLKNKDT 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+        + +NN++  VIDE D++   +     +Q+I    P  +Q 
Sbjct: 171 CPHIVVATPGRLHALVEEKAIRLNNVKSFVIDECDKVLESIDMRRDVQDIFRATPHQKQV 230

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ +++ V + F+QNP  I V+  +         +     +  K        L 
Sbjct: 231 MMFSATLSQDIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYIKLDEKEKNR--KLSDLL 288

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF    +    L   L    F   A+H  + Q  R++   +FKE   ++ V
Sbjct: 289 DSLEFNQVIIFVKSTRRANELNKLLCACNFPSIAVHSGLPQEERIERYRSFKEFNKRICV 348

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           ++D+  RG+DI  +    N+D+PN A+ Y+HR+GR GR G  G A + V +KED + ++ 
Sbjct: 349 STDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAVSFVSSKEDEEVLEK 408

Query: 360 IEKLIEKKVDWLNGD 374
           I+   + K+     +
Sbjct: 409 IQSRFDVKITEFPEE 423


>gi|241953960|ref|XP_002419701.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223643042|emb|CAX41916.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 433

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 167/375 (44%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q   IP  +   DV   A++G GKTA FVL  L  
Sbjct: 51  FRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQ 110

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+     +         E   ++  + A   +                     + K  + 
Sbjct: 111 LDPVPGEISTLVICHTRELAYQIRNEYARFSKYMPDVKTDVFYGGTPIKRDIEKLKNKDT 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+        + +NN++  VIDE D++   +     +Q+I    P  +Q 
Sbjct: 171 CPHIVVATPGRLHALVEEKAIRLNNVKSFVIDECDKVLESIDMRRDVQDIFRATPHQKQV 230

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ +++ V + F+QNP  I V+  +         +     +  K        L 
Sbjct: 231 MMFSATLSQDIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYIKLDEKEKNR--KLSDLL 288

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF    +    L   L    F   A+H  + Q  R++   +FKE   ++ V
Sbjct: 289 DSLEFNQVIIFVKSTRRANELNKLLCACNFPSIAVHSGLPQEERIERYRSFKEFNKRICV 348

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           ++D+  RG+DI  +    N+D+PN A+ Y+HR+GR GR G  G A + V +KED + ++ 
Sbjct: 349 STDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAVSFVSSKEDEEVLEK 408

Query: 360 IEKLIEKKVDWLNGD 374
           I+   + K+     +
Sbjct: 409 IQSRFDVKITEFPEE 423


>gi|213409614|ref|XP_002175577.1| ATP-dependent RNA helicase dbp5 [Schizosaccharomyces japonicus
           yFS275]
 gi|212003624|gb|EEB09284.1| ATP-dependent RNA helicase dbp5 [Schizosaccharomyces japonicus
           yFS275]
          Length = 496

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 99/382 (25%), Positives = 177/382 (46%), Gaps = 17/382 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F DL L P+++  V    + KP+ IQ K +PL+L     ++ G +Q+GTGKTA+F L M
Sbjct: 108 SFDDLNLKPELLKGVYAMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTM 167

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++    +V+      L P+RELA Q+ D   + GK  ++  A  I          + 
Sbjct: 168 LSRVDPSVPKVQAIC---LAPSRELARQIMDVVVEMGKFTDIKTAFGIKDS---VPKGQK 221

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V+      +     R          ++ +  + +   G       I   +P   Q
Sbjct: 222 ITAQIVIGTPGTVMDLMKKRQLETREVKVFVLDEADNMLDQQGLGDQSMRIKHQLPRAAQ 281

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT + ++++ +  F  N   I +     + E I+  F+    +  K   L++   
Sbjct: 282 IVLFSATFSAQVEQYAHRFAPNANEIRLKPEELSVEGIKQLFMDCKNEAHKYDVLVEL-- 339

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   IIFC +K+    +   +   G +V  + GN++   R +++ +F+ G  +++
Sbjct: 340 YGLMTIGQSIIFCRKKETAEEISRRMTADGHAVSCLTGNLEGAQRDEVMDSFRAGKTKVL 399

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLVAK-E 352
           V +++ ARG+D+  V  V N+D+P         + Y+HRIGRTGR GR G +   V   +
Sbjct: 400 VTTNVIARGIDVSQVNMVVNYDLPVDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDAK 459

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
               ++AIEK   + +  +  D
Sbjct: 460 SWAEMEAIEKYFGRPILRVPAD 481


>gi|41409410|ref|NP_962246.1| RhlE [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41398241|gb|AAS05862.1| RhlE [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 505

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 154/428 (35%), Positives = 223/428 (52%), Gaps = 11/428 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+  ++V A+ + G   P  IQ  T+PL L   D+ G A+TG GKT +F +P+L  
Sbjct: 12  FAQLGVRDEIVRALDEKGIQHPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQR 71

Query: 63  LEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKN------YNLTVALLIGGIPFE 113
           +  G A       PR L++ PTREL  QV D+     K+        L+V  + GG P+E
Sbjct: 72  ITAGTAPRALNGTPRALVVVPTRELCLQVTDDLTLAAKHLTADGGRPLSVVPIYGGRPYE 131

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+ I   
Sbjct: 132 PQIDALRAGADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQ 191

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ++LFSATM D +  ++  F+  P  I    P S A           A    K  
Sbjct: 192 IPDDRQSMLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQYVYRAHALDKVE 251

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L+ ++LQ++      I     K+    +   L ++GF V A+HG++ Q +R K L  F+ 
Sbjct: 252 LVSRVLQAESRGATMIFT-RTKRTAQKVADELAERGFKVGAVHGDLGQVAREKALKAFRT 310

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I ++VA+D+AARG+DI DV HV N+ +P   + Y+HRIGRTGRAG+ G A TLV  ++
Sbjct: 311 GDIDVLVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKAGVAVTLVDWDE 370

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI-AQHNHARKNNPIPQKSTGFDRRKKN 412
           +     I+K +   V       S+     E++ I A           PQ       R   
Sbjct: 371 LARWALIDKALGLDVPEPAETYSNSPHLYEELGIPAGAGGRVGAARKPQGPRRSAERATG 430

Query: 413 YSSQKSHI 420
              QKS  
Sbjct: 431 KPDQKSET 438


>gi|257866121|ref|ZP_05645774.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC30]
 gi|257872451|ref|ZP_05652104.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC10]
 gi|257875753|ref|ZP_05655406.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC20]
 gi|257800055|gb|EEV29107.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC30]
 gi|257806615|gb|EEV35437.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC10]
 gi|257809919|gb|EEV38739.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC20]
          Length = 448

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 121/366 (33%), Positives = 189/366 (51%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F      P +  A+ D  + KPT +Q K IP++ +   V G +QTG+GKT +F+LP++
Sbjct: 1   MSFESFKFQPFIYEALADKKFSKPTEVQEKLIPVIQKGRSVVGQSQTGSGKTHTFLLPLM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK--- 117
             ++  +  V++    I  P+RELA Q+    ++ G  ++  + +       + Q +   
Sbjct: 61  DKIDAEKDEVQVV---ITAPSRELATQIYHAAKQIGGFHDPEIRVSNFVGGTDKQRQLSR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              +   V+I TPGRILD  N   L ++   + V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LQNQQPHVVIGTPGRILDMINEQALGVHTANVFVVDEADMTLDMGFLEEVDQIAGRLPEK 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+ ++L+   + ++ NP   E+ + +  ++TI        +   K    L  
Sbjct: 178 LQMLVFSATIPEKLRPFLKKYMANPLIEEIKSKAVISDTI---ENWLISTKGKNTNKLIY 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L +       I+F N K  V  +   L++QG  V  IHG+I  R R +I+   +    Q
Sbjct: 235 QLLTTGHPYLAIVFANTKSRVDEITDYLKEQGLKVAKIHGDISPRERKRIMRQVQNLDYQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N ++P   + +IHR+GRTGR    G A TL    D   I
Sbjct: 295 YVVATDLAARGIDIEGVSHVINAEIPADLDFFIHRVGRTGRNQMDGTAITLYDPSDEGAI 354

Query: 358 DAIEKL 363
            AIE L
Sbjct: 355 QAIEDL 360


>gi|332796635|ref|YP_004458135.1| DEAD/DEAH box helicase domain-containing protein [Acidianus
           hospitalis W1]
 gi|332694370|gb|AEE93837.1| DEAD/DEAH box helicase domain protein [Acidianus hospitalis W1]
          Length = 370

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 121/364 (33%), Positives = 194/364 (53%), Gaps = 20/364 (5%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
            LS ++  A+ +A YV PT +Q   IP +LQ   V   A+TG+GKTA++++P++   E+ 
Sbjct: 24  NLSEELTKALQEANYVNPTKVQELAIPQMLQGKSVLAQAKTGSGKTAAYLIPIIEKEEQA 83

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
                     +L PTRELA QVA+   K GK   +++ ++IGG+P+    +  E   D++
Sbjct: 84  L---------VLTPTRELAEQVANEARKLGKYKKMSIGVIIGGVPY--SGQDKEAKKDIV 132

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGRILD + +G L ++   + ++DE DRM DMGFI  ++ I            FSAT
Sbjct: 133 IGTPGRILDLWGKGYLDLSRFSVAIVDEVDRMFDMGFIDDVRMILKNANPDM-YGFFSAT 191

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
           + +E++ +++ F         N      + I+   +       K        L+ +    
Sbjct: 192 VPEEVESLAKEFSP-------NIEFLKVDDIKPVEIEHLFYEVKGWRDKISKLKDELDDN 244

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
              I     K  V   +   +  F +  +HG++ QR R++ LS+F+ G   +++++DLA+
Sbjct: 245 EKTIVFVNTKKKVEELYEELRDDFEISLLHGDLPQRVRLRNLSSFRRGKTNVLLSTDLAS 304

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE- 365
           RG+D+ DV  V NFD P   E YIHR+GRTGR GR G A T   + D + I  I+ LI+ 
Sbjct: 305 RGIDVIDVTKVINFDTPRDVETYIHRVGRTGRMGRKGIAITFYTRRDAQLILKIKDLIKG 364

Query: 366 KKVD 369
           KK++
Sbjct: 365 KKLE 368


>gi|327443709|gb|EGE90363.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
          Length = 560

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 139/443 (31%), Positives = 218/443 (49%), Gaps = 9/443 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L 
Sbjct: 50  SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 109

Query: 62  ILEKGRARVR-------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L++ PTRELA QV+ +           V  + GG+ +E+
Sbjct: 110 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYES 169

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L+ G DV++ TPGR+LD   R  L ++++ I+V+DEAD MLD+GF+P ++N+    
Sbjct: 170 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 229

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P +RQT+LFSATM   +                   + T  T+       Y  +      
Sbjct: 230 PASRQTMLFSATMPAPI-MALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIE 288

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +   + ++  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+ G
Sbjct: 289 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKPRAIHGDLTQVAREKALKKFRHG 348

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   D+
Sbjct: 349 EATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADV 408

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                I K +  ++       S+       +DI +    +  +P  + +T   RR+  + 
Sbjct: 409 TRWKLINKALNLELSEPVETYSTSPHLYTDLDIPEDAQGQIIDP-EKAATEKKRRQHRHG 467

Query: 415 SQKSHIPLKESEKISKLQQDIQE 437
              SH             +D  +
Sbjct: 468 HDGSHHEKATRRHSRDASKDGDK 490


>gi|154345840|ref|XP_001568857.1| DEAD box RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134066199|emb|CAM43989.1| putative DEAD box RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 571

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 119/374 (31%), Positives = 199/374 (53%), Gaps = 8/374 (2%)

Query: 10  PKVVCA-VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILEKGR 67
           P+ + A +L  G+  PTPIQ ++  +VL   D+ G+A+TG+GKT +F++P +  I  +  
Sbjct: 112 PQYLKAKLLAQGFKAPTPIQAQSWSIVLSGRDLVGVAKTGSGKTLAFIVPALAHIALQEP 171

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
            ++     +I+       AQ  +         ++    + GG P   Q   L +G  +L+
Sbjct: 172 LKMGDGPMVIVLAPTRELAQQIEQETIKVLPQSIRCGCIYGGAPKGPQLGLLRQGVHILV 231

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR++D     ++ +  +  LV+DEADRMLDMGF P ++ I   +   RQTL+FSAT 
Sbjct: 232 ATPGRLIDFMEIKRVNLLRVTYLVLDEADRMLDMGFEPQVRAICGQIRPDRQTLMFSATW 291

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
             ++Q ++ +F +N  RI V +    A           ++ +K      + L  +   + 
Sbjct: 292 PRDIQNLAASFQKNWVRINVGSMELLANKDVTQHFILTSEAAKLDE--LKRLMERHRNQR 349

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            ++FC  KK    L   L++ G    AIHG+ +QR R  IL  F++ +   +VA+D+AAR
Sbjct: 350 VLVFCKTKKTADYLEFQLKRNGVDCMAIHGDKEQRQREFILERFRKDSRLCVVATDVAAR 409

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH----IDAIEKL 363
           GLDI ++  V N+D P + ++Y+HRIGRTGRAG  G +FT++ K + +     +  + +L
Sbjct: 410 GLDIKELETVVNYDFPMQIDDYVHRIGRTGRAGAKGASFTMITKHETQLNASTVFQLVEL 469

Query: 364 IEKKVDWLNGDLSS 377
           +E+      G L  
Sbjct: 470 VERAGQEAPGWLRE 483


>gi|256985213|ref|NP_084372.2| probable ATP-dependent RNA helicase DDX52 [Mus musculus]
 gi|56206921|emb|CAI25508.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Mus musculus]
 gi|74225794|dbj|BAE21716.1| unnamed protein product [Mus musculus]
 gi|148683781|gb|EDL15728.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Mus musculus]
          Length = 598

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 112/440 (25%), Positives = 207/440 (47%), Gaps = 27/440 (6%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     ++ +++  +LDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 163 TFQQLDQEYKINSRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 222

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L++   +      L++ PTRELA+Q+     K  +        +    I  +   
Sbjct: 223 PILMQLKQPTNKGFR--ALVISPTRELASQIHRELIKISEGTGFRIHMIHKAAIAAKKFG 280

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++    +    ++  N+E LV+DE+D++ + G   + +      
Sbjct: 281 PKSSKKFDILVTTPNRLIYLLKQDPPGIDLTNVEWLVVDESDKLFEDGKTGFREQLASIF 340

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT   ++++  +  L N   + +   +S  ET+E   +   ++  K
Sbjct: 341 LACTSPKVRRAMFSATFAYDVEQWCKLNLDNVVSVSIGARNSAVETVEQELLFVGSETGK 400

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +        ++F    +    L H L  +G +V  IH    Q+ R   + +
Sbjct: 401 LLAMRELVKKGFKPP--VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHS 458

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   
Sbjct: 459 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFT 518

Query: 351 KEDIKHIDAIEKLIEKK----VDWLNG--------DLSSLNPPLEKIDIAQHNHARKNNP 398
           ++D   + ++  +I++      +++ G            +  PLE+  I           
Sbjct: 519 EDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESICTTPKYFLEQA 578

Query: 399 IPQKSTGFDRRKKNYSSQKS 418
             +K  G + +KK    +KS
Sbjct: 579 KQKKVAGQNSKKKETLKEKS 598


>gi|71421123|ref|XP_811713.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70876408|gb|EAN89862.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 622

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 198/378 (52%), Gaps = 7/378 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--ML 60
           F+DL     +  + +D GY +PTPIQ    P++L   D+ G+A+TG+GKT +F++P  + 
Sbjct: 72  FSDLVAPDSIHQSFIDLGYKEPTPIQSIAWPILLNSRDLVGVAKTGSGKTMAFMVPAALH 131

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
            + +        P  L+L PTRELA Q+ +   K  +         +  G P   Q + L
Sbjct: 132 IMAQPPVRPGDGPIALVLAPTRELAVQIEEETRKVLRRIPTIATTCLYGGAPKGPQIRTL 191

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G  V I TPGR++D        +  +  LV+DEADRMLDMGF   I+ I S +   RQ
Sbjct: 192 RAGVHVAIATPGRLIDLLEMRATNLLRVTYLVLDEADRMLDMGFEIQIRKICSQIRSDRQ 251

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+FSAT   E++ ++ +F ++  R+ V +    A       V    +Y K+     + +
Sbjct: 252 TLMFSATWPQEIRNLAASFQRDFIRVHVGSEDLVANNDVCQHVIVVEEYDKQR--RLEEI 309

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA-IHGNIDQRSRMKILSNFKEGTIQL 298
             +   +  +IF   K+   +L  SL +        IHG+ +Q  R  +L  F+     +
Sbjct: 310 LQKLGRQRVLIFVKTKRTADSLHGSLRRILGGAVMAIHGDKEQSQRDYVLDRFRRDDRSV 369

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED-IKHI 357
           +VA+D+AARGLDI ++  V NFD+P   E+Y+HRIGRTGRAG+ G A++ V+  D  K I
Sbjct: 370 LVATDVAARGLDIKNLDVVINFDMPTNIEDYVHRIGRTGRAGQRGDAYSFVSGADPSKTI 429

Query: 358 DAIEKLIEKKVDWLNGDL 375
             +  L+ +    +  +L
Sbjct: 430 RDLVDLLRRANQEVPPEL 447


>gi|332675736|gb|AEE72552.1| DEAD-box ATP-dependent RNA helicase CshA [Propionibacterium acnes
           266]
          Length = 564

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 139/443 (31%), Positives = 217/443 (48%), Gaps = 9/443 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L 
Sbjct: 54  SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 113

Query: 62  ILEKGRARVR-------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L++ PTRELA QV+ +           V  + GG+ +E+
Sbjct: 114 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYES 173

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L+ G DV++ TPGR+LD   R  L +++  I+V+DEAD MLD+GF+P ++N+    
Sbjct: 174 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHERIVVLDEADEMLDLGFLPDVENLIGRT 233

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P +RQT+LFSATM   +                   + T  T+       Y  +      
Sbjct: 234 PASRQTMLFSATMPAPI-MALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIE 292

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +   + ++  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+ G
Sbjct: 293 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 352

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   D+
Sbjct: 353 EATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADV 412

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                I K +  ++       S+       +DI +    +  +P  + +T   RR+  + 
Sbjct: 413 TRWKLINKTLNLELSEPVETYSTSPHLYTDLDIPEDAQGQIIDP-EKAATEKKRRQHRHG 471

Query: 415 SQKSHIPLKESEKISKLQQDIQE 437
              SH             +D  +
Sbjct: 472 HDGSHHEKATRRHSRDASKDGDK 494


>gi|227877601|ref|ZP_03995655.1| ATP-dependent RNA helicase [Lactobacillus crispatus JV-V01]
 gi|256844556|ref|ZP_05550042.1| RNA helicase [Lactobacillus crispatus 125-2-CHN]
 gi|256849055|ref|ZP_05554488.1| RNA helicase [Lactobacillus crispatus MV-1A-US]
 gi|262047537|ref|ZP_06020492.1| RNA helicase [Lactobacillus crispatus MV-3A-US]
 gi|293381585|ref|ZP_06627572.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1]
 gi|227862795|gb|EEJ70260.1| ATP-dependent RNA helicase [Lactobacillus crispatus JV-V01]
 gi|256613634|gb|EEU18837.1| RNA helicase [Lactobacillus crispatus 125-2-CHN]
 gi|256713831|gb|EEU28819.1| RNA helicase [Lactobacillus crispatus MV-1A-US]
 gi|260572113|gb|EEX28678.1| RNA helicase [Lactobacillus crispatus MV-3A-US]
 gi|290921855|gb|EFD98870.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1]
          Length = 453

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 133/440 (30%), Positives = 207/440 (47%), Gaps = 13/440 (2%)

Query: 1   MD--FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           M+  F D  + P +   +    + KPT +Q K IP +L    V   A TG+GKT ++++P
Sbjct: 1   MNNIFIDSRIKPAIQAGLKKIHFEKPTKVQEKVIPAMLSDLSVVVQAATGSGKTHAYLVP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +   +E+ +  V+   TL      +   QVA         +     L  G        K 
Sbjct: 61  IFNEIEEDKRYVQAIVTLPSRELADQLYQVARQLRDAAGMHFSIAHLAGGTDRERQLEKY 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 ++I TPGR+LD   +    ++ ++  VIDEAD  LDMGF+  I  + + +P   
Sbjct: 121 QNNTPQLVIATPGRLLDFVQKKVFAVDQVKTFVIDEADMTLDMGFLNDIDQVAAKLPKDV 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q   FSAT+  +L      ++ +P  I ++ PS  A TI           SK    +   
Sbjct: 181 QIAAFSATIPVKLSNFLRKYMAHPDEIVIDNPSVIAPTI---KNDLLDIGSKDRKNVLYK 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +       ++F N K+ V  L + L+ QG  V  IHG + +R R + L   ++G  Q 
Sbjct: 238 LLTMGQPYLALVFANTKQKVDELTNYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQYQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARGLDI  V  V N+++P   E  IHRIGRTGR G  G A TL+ +E++  I+
Sbjct: 298 VVASDLAARGLDIDGVSLVVNYEIPRDIEFVIHRIGRTGRNGLSGHAITLIREEEMNRIE 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF-----DRRKKNY 413
            +EK +    D++      L P   K   ++ N   KN  +  K  G+      +RK  Y
Sbjct: 358 ELEK-MGVHFDFVEIKNGELVP--RKHYRSRENRQSKNRKLDTKLVGYVKKEKRKRKPGY 414

Query: 414 SSQKSHIPLKESEKISKLQQ 433
             +      +++ +  KL+Q
Sbjct: 415 KKKIKRAIQEDNRQKRKLEQ 434


>gi|225451679|ref|XP_002276467.1| PREDICTED: similar to DEAD/DEAH box helicase family protein [Vitis
           vinifera]
          Length = 540

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 100/402 (24%), Positives = 200/402 (49%), Gaps = 5/402 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L  K++  +  AGY  PTP+Q++ IP  L   ++   A TG+GKTASF++P++
Sbjct: 137 LSFSSCNLPQKLLQNIEAAGYEIPTPVQMQAIPAALVGKNLLVSADTGSGKTASFLVPIV 196

Query: 61  TIL----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +             + P  ++L PTREL  QV +  +  GK      AL++GG     Q 
Sbjct: 197 SRCTSIRPDHSPNQKNPLAMVLTPTRELCMQVEEQAKLLGKGLPFKTALVVGGDAMPRQL 256

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            ++++G ++++ TPGR++D  ++ ++ ++++ +LV+DE D ML+ GF   +         
Sbjct: 257 HRIQQGVELIVGTPGRLIDLLSKHEIELDDVFMLVLDEVDCMLERGFRDQV-MQIYRALS 315

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q L++SAT++ E++KV+ +  ++   I V   +     ++   +   ++  K+     
Sbjct: 316 QPQVLMYSATISQEVEKVASSMAKDIIVISVGKSNRPNIAVKQLAIWVESKQKKQKLFDI 375

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
              +   T    +   ++    +         G    +IHG    + R +I+S+F  G +
Sbjct: 376 LTSKQHFTPPVVVFVGSRLGADLLTEAITITTGLKALSIHGEKSMKERREIMSSFLVGEV 435

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +MVA+ + +RG+D+  V  V  FD+PN  + Y+H+IGR  R G  G A   + +E+   
Sbjct: 436 PVMVATGVLSRGVDLLSVRQVIVFDMPNSIKEYVHQIGRASRLGEEGTAILFLNEENRNL 495

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
              + ++++     +  +L++    L  +++ +    +K   
Sbjct: 496 FPELVEILKSSGAAIPRELANSRYRLGSVNVGRGQIRQKKRK 537


>gi|256853014|ref|ZP_05558384.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
 gi|256711473|gb|EEU26511.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
          Length = 449

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 123/400 (30%), Positives = 199/400 (49%), Gaps = 13/400 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P +  A+ + G+ +PT +Q K IP++ +   V G +QTG+GKT +F+LP++ 
Sbjct: 3   SFKQFQFQPFINEALAEKGFEEPTEVQEKLIPIIQKGKSVIGQSQTGSGKTHTFLLPLMD 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNKK 118
            ++     V++    I  P+RELA Q+    ++  +     + +             NK 
Sbjct: 63  KVKPTIDEVQIV---ITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKL 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +   V+I TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I   +P   
Sbjct: 120 KHQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+   + +L+NP    +   +  +ETI        +   K    +   
Sbjct: 180 QMLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETI---DNWLISTKGKNSNQIIYQ 236

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +       I+F N K+ V  +   L+ QG  V  IHG+I  R R +++   +    Q 
Sbjct: 237 LLTIGHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQY 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N +VP+  + +IHR+GRTGR G +G A TL +  D + I 
Sbjct: 297 VVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEAIT 356

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
            IE+L    V +   ++ +    +E  D  +     K+  
Sbjct: 357 QIEQL---GVSFKPKEIKN-GEIVETYDRNRRTKREKSRE 392


>gi|229545940|ref|ZP_04434665.1| ATP-dependent RNA helicase [Enterococcus faecalis TX1322]
 gi|307291362|ref|ZP_07571246.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|229308903|gb|EEN74890.1| ATP-dependent RNA helicase [Enterococcus faecalis TX1322]
 gi|306497593|gb|EFM67126.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|315030003|gb|EFT41935.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
          Length = 452

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 123/400 (30%), Positives = 199/400 (49%), Gaps = 13/400 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P +  A+ + G+ +PT +Q K IP++ +   V G +QTG+GKT +F+LP++ 
Sbjct: 6   SFKQFQFQPFINEALAEKGFEEPTEVQEKLIPIIQKGKSVIGQSQTGSGKTHTFLLPLMD 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNKK 118
            ++     V++    I  P+RELA Q+    ++  +     + +             NK 
Sbjct: 66  KVKPTIDEVQIV---ITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKL 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +   V+I TPGRILD  N   L ++     V+DEAD  LDMGF+  +  I   +P   
Sbjct: 123 KHQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKL 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+   + +L+NP    +   +  +ETI        +   K    +   
Sbjct: 183 QMLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETI---DNWLISTKGKNSNQIIYQ 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +       I+F N K+ V  +   L+ QG  V  IHG+I  R R +++   +    Q 
Sbjct: 240 LLTIGHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQY 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N +VP+  + +IHR+GRTGR G +G A TL +  D + I 
Sbjct: 300 VVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEAIT 359

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
            IE+L    V +   ++ +    +E  D  +     K+  
Sbjct: 360 QIEQL---GVSFKPKEIKN-GEIVETYDRNRRTKREKSRE 395


>gi|224076698|ref|XP_002199492.1| PREDICTED: ATP-dependent RNA helicase ROK1 [Taeniopygia guttata]
          Length = 602

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 107/376 (28%), Positives = 188/376 (50%), Gaps = 15/376 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     + PK++  +  AG+  PT IQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 155 TFEQLQQEYKVHPKIMENIHAAGFHVPTAIQMQAIPVMLHGRELLASAPTGSGKTLAFCI 214

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+LT L++ R +      LI+ PTRELA+Q      K  +        +       +   
Sbjct: 215 PLLTHLKQPRNKGFR--ALIISPTRELASQTHRELVKLAEGTGFRIHMIHKAAEAAKKFG 272

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++         ++  ++E LV+DE+D++ + G   + +      
Sbjct: 273 PKSSKKFDILVTTPNRLIYLLKEDPPAIDLSSVEWLVVDESDKLFEDGKSGFREQLGTIF 332

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  LFSAT   ++++  +  L N   + V   +S AET+E   +   ++  K
Sbjct: 333 LACTSHLARRALFSATFAHDVEEWCKLNLDNVVLVSVGARNSAAETVEQELLFVGSETGK 392

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +        ++F    +    L H L  +G +V  IH +  Q+ R +++ +
Sbjct: 393 LTAMRELVKKGFAPP--VLVFVQSIERAKELFHELIYEGINVDVIHADKTQQQRDRVVQS 450

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ S L ARG+D   V  V N+D+P  A  YIHRIGRTGRAG  GKA T   
Sbjct: 451 FRAGKIWVLICSALLARGMDFKGVNMVINYDLPTSAVEYIHRIGRTGRAGHRGKAVTFFT 510

Query: 351 KEDIKHIDAIEKLIEK 366
           ++D   + +I  +I++
Sbjct: 511 EDDKPLLRSIANVIQR 526


>gi|195030620|ref|XP_001988166.1| GH11018 [Drosophila grimshawi]
 gi|193904166|gb|EDW03033.1| GH11018 [Drosophila grimshawi]
          Length = 389

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F + +L 
Sbjct: 17  NFDDMSLREELLRGIYGYGFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATFSIAILQ 76

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     VR  + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 77  QIDTA---VRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L   +I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 134 GCHVVVGTPGRVYDMINRKVLRTQSIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F++ P  I V     T E I+  +V    +  K   L       
Sbjct: 194 LLSATMPPDVLEVSRCFMREPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDL--YD 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 252 TLSITQSVIFCNTRRKVDQLTQEMSSHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  +D + +  IE
Sbjct: 312 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIE 371

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 372 QFYHTTIEEMPANIADL 388


>gi|238504232|ref|XP_002383347.1| ATP-dependent RNA helicase, putative [Aspergillus flavus NRRL3357]
 gi|220690818|gb|EED47167.1| ATP-dependent RNA helicase, putative [Aspergillus flavus NRRL3357]
          Length = 696

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 113/421 (26%), Positives = 190/421 (45%), Gaps = 22/421 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGLS K +  +   G+   T +Q +TIP +L   DV G A+TG+GKT SF++P +
Sbjct: 210 VKFTELGLSEKTMKGIEGMGFETMTEVQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAI 269

Query: 61  TILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L   R + R     +I+ PTRELA Q+     +   +++ T  ++IGG    A+ +KL
Sbjct: 270 EMLSALRFKPRNGTGAIIVSPTRELALQIFGQVRELLAHHSQTYGIVIGGANRRAEAEKL 329

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNN-----------IEILVIDEADRMLDMGFIPYIQ 168
            +G ++L+ TPGR+LDH    +  +               I + +    +         Q
Sbjct: 330 MKGVNLLVATPGRLLDHLQNTQGFVFKNLRTLISTINLFRIAIDEADRILEVGFEDEMRQ 389

Query: 169 NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
               L    RQT+LFSAT T +++ ++   L+               T+E          
Sbjct: 390 IAKILPSENRQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICE 449

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           + K  LL      ++  K  I+F +   +V      L      V  +HG   Q+ R    
Sbjct: 450 ADKRFLLLFSFLKRNLRKKIIVFLSSCNSVKYYGELLNYIDLPVLDLHGKQKQQKRTNTF 509

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFT 347
             F       ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R     G++  
Sbjct: 510 FEFCNAKQGTLICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGSNGKGRSLM 569

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLS-----SLNPPLEKIDIAQHNHARKNNPIPQK 402
            +   ++  +  ++   E +V  +  D       ++   LEK+ I Q+ +  K+     +
Sbjct: 570 FLQPSEVGFLKHLK---EARVPVVEFDFPTQKIVNVQSQLEKL-IGQNYYLNKSAKEGYR 625

Query: 403 S 403
           S
Sbjct: 626 S 626


>gi|148222920|ref|NP_001089088.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Xenopus laevis]
 gi|114107928|gb|AAI23292.1| Ddx10 protein [Xenopus laevis]
          Length = 663

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 130/446 (29%), Positives = 215/446 (48%), Gaps = 14/446 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  +++A Y  PT IQ +TI L LQ  DV G A+TG+GKT +F++P L  
Sbjct: 76  FSDFPLSKKTLRGLVEAQYRLPTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFIIPALEC 135

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         LI+ PTRELA Q  +   K G+N+  +  L+IGG   + +   + R
Sbjct: 136 LYRQQWTSDDGLGVLIISPTRELAYQTFEVLRKVGRNHEFSAGLVIGGKDLKQETACIHR 195

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +           +N+ +LV+DEADR+LDMGF   +  I   +P  RQTL
Sbjct: 196 TNILICTPGRLLQHMDETSFFHASNLHMLVLDEADRILDMGFADTMNAIIENLPKKRQTL 255

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L++P+ + V+   +   T             ++   L      
Sbjct: 256 LFSATQTKSVKDLARLSLKDPEYVWVHE-KAKFSTPATLEQNYIVCELQQKINLLYSFIR 314

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               K  I+F +  K V  L  +    + G  V  +HG   Q  RM++ ++F      ++
Sbjct: 315 NHLKKKSIVFFSSCKEVQYLFRAFCRLRPGIPVLVLHGKQQQTKRMEVYNDFIRKKSAVL 374

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V   D P  A  YIHR+GRT R    G+A  ++   ++K +  
Sbjct: 375 FATDIAARGLDFPAVSWVLQLDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEVKGMA- 433

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
            ++L EKKV      ++    P + +D+      R    + Q+    +  ++ + S    
Sbjct: 434 -KQLEEKKVPINEIKIN----PEKLLDV----QGRLEAFLAQEQDLKETAQRCFVSYLRS 484

Query: 420 IPLKESEKISKLQQDIQENDADSLGF 445
           + L +++++  + +      A SLG 
Sbjct: 485 VYLMKNKEVFDVFKLPLTPYAQSLGL 510


>gi|25028142|ref|NP_738196.1| putative ATP-dependent RNA helicase [Corynebacterium efficiens
           YS-314]
 gi|259507199|ref|ZP_05750099.1| ATP-dependent RNA helicase [Corynebacterium efficiens YS-314]
 gi|23493426|dbj|BAC18396.1| putative ATP-dependent RNA helicase [Corynebacterium efficiens
           YS-314]
 gi|259165214|gb|EEW49768.1| ATP-dependent RNA helicase [Corynebacterium efficiens YS-314]
          Length = 460

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 133/415 (32%), Positives = 202/415 (48%), Gaps = 8/415 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-L 60
            F++L L   +V  +   G     PIQ   IP  L   DV G   TG+GKT +F LPM  
Sbjct: 3   TFSELNLPDPIVKELRKEGITDAFPIQAAAIPDALAGLDVLGRGPTGSGKTFTFGLPMLA 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +   G +R   PR LIL PTRELAAQV +  E       L    ++GG+        L 
Sbjct: 63  RLAASGASRPGQPRGLILVPTRELAAQVRERLEGPAAAMGLRTLEVVGGVNINRNITALA 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              DVL+ TPGR  D  N+ KL +  +EI  +DEAD M DMGF+P ++ +  L P   Q 
Sbjct: 123 SPVDVLVATPGRAQDLVNQKKLSLAQVEITALDEADHMADMGFLPQVRRLMDLTPAKGQR 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++ K+ + ++ NP        ++   T+ H  +    + S+   + +    
Sbjct: 183 LLFSATLDGDVTKLVDRYMHNPVTHSTAPVAAAVNTMTHYRLLVGGRDSRALVVER---- 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K  V      L + G +   IHG+  Q +R   L+ F +G+I ++V
Sbjct: 239 IAAREGKTIMFMRTKHGVDRQVKKLRRVGINAVGIHGDKGQNTRTNALAGFTDGSIPVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ D+  V + D P   + Y+HR GRT RAG  G   TLV  E +K +  +
Sbjct: 299 ATDIAARGIDVDDISLVVHVDPPAEHKAYLHRAGRTARAGTTGTVVTLVMDEQVKEVRDL 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +  +  V+    ++   +P L +I  A+         +P +  G  ++  N  S
Sbjct: 359 FR--KAGVEAAEVEVHENSPELARITGARRPSG-TPLALPGQQPGRGQKSANNRS 410


>gi|312212689|emb|CBX92772.1| hypothetical protein [Leptosphaeria maculans]
          Length = 848

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 126/456 (27%), Positives = 203/456 (44%), Gaps = 26/456 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF DL LS      +  + +   T +Q K IPL L   D+   A+TG+GKT SF++P+L 
Sbjct: 94  DFTDLPLSEPTKQGLKSSHFAVMTDVQAKAIPLALLGRDILAAAKTGSGKTLSFLIPVLE 153

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKK 118
            L + +   +      LIL PTRELA Q+ D   K G++ +  + +LLIGG   EA+   
Sbjct: 154 NLYRLQHVGQDAGLGALILSPTRELAIQIFDVLRKIGRHGHMFSASLLIGGKSLEAERNA 213

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +   ++      +           +++++LV+DEADR+LDMGF   +  I   +P  R
Sbjct: 214 LPKTNILVATPGRLLQHLSQTAMFSADDLKMLVLDEADRILDMGFQRDVDAIIDYLPKER 273

Query: 179 QTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTLLFSAT + ++      +              S                 K   L   
Sbjct: 274 QTLLFSATQSKKVSDLARLSLQDPEYVSVHAEDKSATPKGLTQNYIICPLEEKMDTLWSF 333

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  S+ +         +    V       + G  +  IHG   Q +R++  + F      
Sbjct: 334 IQASKKSKILCFFSTAKTVRFVYESFRHMQPGIPLLHIHGRQKQGARLETTAKFSAAKYS 393

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            + A+D+AARGLD P V  V   D P+  + YIHR+GRT R  R G+    +A  + + +
Sbjct: 394 CLFATDVAARGLDFPAVDFVIQVDCPDDVDTYIHRVGRTARYNREGRGVVFLAPSEEEGM 453

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             +++L  KKV            P+E I++ Q       + +  ++  F      Y  QK
Sbjct: 454 --LKRLEAKKV------------PVEMINVRQKKRTTIKDQL--QNMCFQDPALKYLGQK 497

Query: 418 SHIP------LKESEKISKLQQDIQENDADSLGFRG 447
           + +       L++ +++ KL++   E  A SLG  G
Sbjct: 498 AFMTHVKSIYLQKDKEVFKLKEYDLEAYAASLGLPG 533


>gi|291405635|ref|XP_002719293.1| PREDICTED: ATP-dependent RNA helicase ROK1 [Oryctolagus cuniculus]
          Length = 599

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 100/376 (26%), Positives = 186/376 (49%), Gaps = 15/376 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     ++ +++  +LDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 162 TFQQLDQEYKINSQLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 221

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L++   +      LI+ PTRELA+Q+     K  +        +       +   
Sbjct: 222 PILMHLKQPTNKGFR--ALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAEAAKKFG 279

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++    +    ++  ++E LV+DE+D++ + G   +        
Sbjct: 280 PKSSKKFDILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIF 339

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT   ++++  +  L N   + +   +S  ET+E   +   ++  K
Sbjct: 340 LACTSHKVKRAMFSATFAYDVEQWCKLNLDNVITVSIGARNSAVETVEQELLFVGSETGK 399

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +  +     ++F    +    L H L  +G +V  IH    Q+ R   + +
Sbjct: 400 LLAMRELVKKGFNPP--VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHS 457

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   
Sbjct: 458 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFT 517

Query: 351 KEDIKHIDAIEKLIEK 366
           ++D   + ++  +I++
Sbjct: 518 EDDKPLLRSVANVIQQ 533


>gi|256821842|ref|YP_003145805.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256795381|gb|ACV26037.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 460

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 133/405 (32%), Positives = 219/405 (54%), Gaps = 16/405 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P ++  + D G+ + TPIQ   +P VL+  DV   A+TG+GKTA F L +L  
Sbjct: 6   FSTLALQPALIANLADLGFERMTPIQADALPQVLEGKDVIAQAKTGSGKTAVFGLGILEK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+     V+   +++L PTRELA QVA+   +  +       L +  G P   Q   L+ 
Sbjct: 66  LDPKNFSVQ---SMVLCPTRELAEQVAEEIRRLARPIANVKILTLCGGTPLRPQADSLKH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  +  L ++ I  LV+DEADRMLDMGF   +  I + +P  RQTL
Sbjct: 123 GAHIVVGTPGRIVDHLEKQTLDLDAISTLVLDEADRMLDMGFEDSMDAIVNELPRQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT   ++Q ++E  +  P  ++      ++   +  +  +          L      
Sbjct: 183 LFSATYPPQIQAIAERVMVKPVLVQALEKHDSSSIKQDFYRISDEGERDVAVRLLL---L 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +    + +IFCN K++V +L   L++ GFSV A+HG+++Q+ R + L  F   ++ +MVA
Sbjct: 240 KYRPDSTVIFCNTKRHVKDLTQELKRHGFSVLALHGDLEQKERDQALIRFANNSVSIMVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N+ + +  E ++HRIGRTGRAG  G A ++V  ++   +  + 
Sbjct: 300 TDVAARGLDIDSLDLVINYHIASDPEIHVHRIGRTGRAGNKGHACSIVISKEKHKVARLA 359

Query: 362 KLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           + + ++++ +           +  PP+  I I   +  +K    P
Sbjct: 360 EYLGQEIEPIALPDTQLLKEPTFRPPMATIQI---DGGKKQKLRP 401


>gi|322701035|gb|EFY92786.1| cell cycle control protein [Metarhizium acridum CQMa 102]
          Length = 397

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 133/377 (35%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L  +++  V   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 25  SFDDMSLKAELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQ 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+  + LIL PTRELA Q+       G   N+     IGG       K L+ 
Sbjct: 85  KIDPT---VKQCQALILAPTRELAQQIQKVVVAIGDFMNVECHACIGGTSVRDDMKALQD 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + +++ V+DEAD ML  GF   I +I  L+P + Q +
Sbjct: 142 GPQVVVGTPGRVHDMIQRRFLKTDAMKMFVLDEADEMLSRGFTDQIYDIFQLLPQSTQVV 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 202 LLSATMPQDVLEVTTRFMRDPVRILVKKDELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A
Sbjct: 260 TVTITQAVIFCNTRRKVDWLTEKLTARDFTVSAMHGDMDQTQRDLIMKEFRSGSSRVLIA 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  ED++ +  IE
Sbjct: 320 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTAEDVRMMREIE 379

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 380 QFYSTQIEEMPMNVADL 396


>gi|260947802|ref|XP_002618198.1| hypothetical protein CLUG_01657 [Clavispora lusitaniae ATCC 42720]
 gi|238848070|gb|EEQ37534.1| hypothetical protein CLUG_01657 [Clavispora lusitaniae ATCC 42720]
          Length = 692

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 129/394 (32%), Positives = 199/394 (50%), Gaps = 19/394 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L P +V  +  + + KPTP+Q  ++P+V  + D+   AQTG+GKT  F+ P+L+
Sbjct: 225 SFEAPPLDPLLVENITLSRFTKPTPVQKYSVPIVCNKRDLMACAQTGSGKTGGFLFPVLS 284

Query: 62  ILEKG------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                                  P  LI+ PTREL +Q+ +  +KY     +  A+  GG
Sbjct: 285 ECFMSGPAPQPEPTGAFSFNKVYPTILIMAPTRELVSQIFEEAKKYCYRSWVRPAVAYGG 344

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +    Q + L+RG D+L+  PGR+ D   RG++ + N++ LV+DEADRMLDMGF P I++
Sbjct: 345 VDIGQQIRTLQRGCDLLVAAPGRLTDLLERGRVSLCNVKYLVLDEADRMLDMGFEPQIRH 404

Query: 170 ITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I               +FSAT    +Q ++ +FL++   + V    ST+  I    +   
Sbjct: 405 IVQECDMPDVQDRQTLMFSATFPRNIQMLARDFLKDYVFLSVGRVGSTSANITQKVLLVE 464

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
               +   L              I+F   K+    L   L  QGF   AIHGN  Q  R 
Sbjct: 465 DDEKRSVILDLLSAADNG---LTIVFTETKRMADYLADFLYDQGFPATAIHGNRTQYERE 521

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           K L+ FK GT  ++VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A
Sbjct: 522 KALAAFKNGTAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNTGIA 581

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
            +   + +   +  +  L+ +    +   L  ++
Sbjct: 582 TSFFNRNNKNIVKDMIALLSEANQEIPDFLVKIS 615


>gi|298208330|ref|YP_003716509.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
 gi|83848251|gb|EAP86121.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
          Length = 623

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 125/356 (35%), Positives = 206/356 (57%), Gaps = 8/356 (2%)

Query: 19  AGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLI 77
            G+ +P+ +Q K IP++L++  D+  +AQTGTGKTA+F  P++  ++ G  + +    LI
Sbjct: 1   MGFTEPSEVQEKAIPILLEKDTDIVALAQTGTGKTAAFGFPLIQKIDAGYKKTQG---LI 57

Query: 78  LEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           L PTREL  Q+ +  + Y K         + GG     Q K+++RGA +++ TPGR+ D 
Sbjct: 58  LSPTRELCLQITNELQNYSKYVKGLNPVAVYGGASITEQAKQIKRGAQIIVATPGRMQDM 117

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
             RG + ++ I+  V+DEAD ML+MGF   I  I S  P  + T LFSATM  E+ ++++
Sbjct: 118 IRRGLVDISEIQYCVLDEADEMLNMGFYDDITEILSHSPEDKFTWLFSATMPKEVARIAK 177

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
           +F+ NP  I V + +   E + H     Y    +      + L   +     +IFC  K+
Sbjct: 178 DFMNNPVEITVGSKNKGTENVSH---EYYLVGGRDRYKALKRLCDANPEIFSVIFCRTKR 234

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
           +   +   L + G+S  AIHG++ Q  R  ++ +F+   IQ++VA+D+AARG+D+ D+ H
Sbjct: 235 DTQKVAEQLIQDGYSAGAIHGDLSQNQRDLVMRSFRTRQIQMLVATDVAARGIDVDDITH 294

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
           V ++ +P+  E Y HR GRTGRAG+ G + T+  K +++ I AIEK I++  +  +
Sbjct: 295 VIHYTLPDEPEVYTHRSGRTGRAGKSGTSMTIATKSEMRKIKAIEKRIQRNFERKD 350


>gi|164659598|ref|XP_001730923.1| hypothetical protein MGL_1922 [Malassezia globosa CBS 7966]
 gi|159104821|gb|EDP43709.1| hypothetical protein MGL_1922 [Malassezia globosa CBS 7966]
          Length = 552

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 130/432 (30%), Positives = 214/432 (49%), Gaps = 25/432 (5%)

Query: 1   MDFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           + F +L   ++PK+   +   G+ KPT IQ    P++LQ  D+ G+A+TG+GKT +F +P
Sbjct: 118 LSFDELNGKINPKLKERLDMEGFSKPTLIQSCCWPVLLQGRDMVGVAETGSGKTLAFGIP 177

Query: 59  MLTILEKGRA-------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105
            L  + +                       L++ PTRELA Q  DN  +  +     V  
Sbjct: 178 ALQYVMEQWPPSSTSSIKKSKSNNKNKIHVLVIAPTRELAIQTRDNLARVAEPLGYGVFC 237

Query: 106 LIGGIPFEAQNKK---LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
           L GG+    Q ++         +++ TPGR+LD      L + ++  L +DEADRMLD G
Sbjct: 238 LYGGVSKGEQIRELASYALPVHIIVGTPGRVLDLAREESLDLGHVSYLTLDEADRMLDKG 297

Query: 163 FIPYIQN---ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
           F P I+    +T      R+T +FSAT    ++ +++ F++ P R+ V +   +A     
Sbjct: 298 FEPDIRAIIGMTKTNEDGRRTNMFSATWPPAVRGLADTFMRVPVRVTVGSDVLSANRRVS 357

Query: 220 CFVA---TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
             V          +      + +Q+Q T +  +IF   KK    + ++L + G+ V  IH
Sbjct: 358 QTVQVLDDGRAKERALNTFLRTIQAQKTNEKILIFALYKKEAQRVENTLRRWGYRVSGIH 417

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G++ Q  R+  L  FK     L+VA+D+AARGLDIP+V +V N+  P   E+YIHRIGRT
Sbjct: 418 GDLSQHDRLASLEAFKTAETPLLVATDVAARGLDIPNVEYVINYTFPLTIEDYIHRIGRT 477

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH-NHARK 395
           GR G+ GKA T    ED  H   + ++++     +  ++      +++   + + +H ++
Sbjct: 478 GRGGKSGKAITFFTDEDKAHAGELIRVLKDANQPVPKEMDRFPTTIKRKTHSSYGDHYKE 537

Query: 396 NNPIPQKSTGFD 407
             P   K   FD
Sbjct: 538 LVPGKAKKITFD 549


>gi|148231338|ref|NP_001084622.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Xenopus laevis]
 gi|46249840|gb|AAH68749.1| MGC81243 protein [Xenopus laevis]
          Length = 552

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 129/507 (25%), Positives = 227/507 (44%), Gaps = 49/507 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +LGL  +++ ++ D G+ KPT IQ K IPL L+  D+   A+TG+GKTAS+ +P++
Sbjct: 4   LQFHELGLDDRLLKSIADLGWAKPTLIQEKAIPLALEGKDLLARARTGSGKTASYSIPII 63

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEK--YGKNYNLTVALLIGGIPFEAQN 116
             L + +  V  +  R +IL PT+EL  QV     +       ++ VA + G     AQ 
Sbjct: 64  QNLLQAKMMVSEQAIRVIILVPTKELGQQVQQMIRQLTVYCARDIKVADISGQADISAQR 123

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNI-EILVIDEADRMLDMGFIPYIQNITSLVP 175
             L    D+++ TP R+L H  +  + + +  + LVIDEAD +   GF   ++N+   +P
Sbjct: 124 PILMEKPDIVVGTPSRVLTHITQQTICVRDTLQALVIDEADLIFSFGFEEDLKNLLCQLP 183

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q+ L SAT ++++Q + E  L NP  +++        +    +     +  K   L 
Sbjct: 184 KIFQSFLMSATFSEDVQALKELVLHNPVTLKLEESQLPDSSQLTQYHIQCEEEDKFLLLY 243

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L  S       IIF N+      L   LE+     C ++  +   SR  I+S F +G 
Sbjct: 244 TLLKLSLVRG-KTIIFVNEVDRSYRLKLFLEQFSIPACVLNSELPIHSRCHIISQFNQGF 302

Query: 296 IQLMVASDLA-------------------------------ARGLDIPDVGHVFNFDVPN 324
              ++A+D                                 +RG+D  +V  V NFD P 
Sbjct: 303 YDYIIATDEQSLADPSVKGRRGEGKKKGGRGQKGQDKEYGVSRGIDFQNVSTVLNFDFPQ 362

Query: 325 RAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP--- 381
             ++YIHR GRT RA   G A T VA  ++  +  +E+ +   V     D   L P    
Sbjct: 363 SVDSYIHRAGRTARANNPGVALTFVAHTELPLLAGVEEALGGGVP----DEYVLKPYRFC 418

Query: 382 LEKIDIAQHNHARKNNPIPQKSTGFDR----RKKNYSSQKSHIPLKESEK-ISKLQQDIQ 436
           +E+++  ++        + +++    R    +++  +S+K     +++ +    L+ D  
Sbjct: 419 MEEVEGFRYRCRDAMRSVTKQAIKEARLKEIKEELLNSEKLKTYFEDNPRDFQLLRHDKP 478

Query: 437 ENDADSLGFRGNMPAFMLPKNRGKLND 463
            + A       N+P +++P     + D
Sbjct: 479 LHPAIVKPHLKNVPDYLIPPTLRAVAD 505


>gi|331662753|ref|ZP_08363676.1| ATP-independent RNA helicase DbpA [Escherichia coli TA143]
 gi|331061175|gb|EGI33139.1| ATP-independent RNA helicase DbpA [Escherichia coli TA143]
          Length = 457

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 133/383 (34%), Positives = 208/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HGN++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGNLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W    ++S   PLE
Sbjct: 357 SDMLQIKLNWQTPPVNSSIVPLE 379


>gi|284921218|emb|CBG34284.1| ATP-independent RNA helicase [Escherichia coli 042]
          Length = 457

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 133/383 (34%), Positives = 208/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HGN++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGNLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W    ++S   PLE
Sbjct: 357 SDMLQIKLNWQTPPVNSSIVPLE 379


>gi|152013501|sp|A4RHF1|DED1_MAGO7 RecName: Full=ATP-dependent RNA helicase DED1
          Length = 671

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 136/392 (34%), Positives = 207/392 (52%), Gaps = 26/392 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++  L   ++  +  A Y  PTP+Q  ++P+V+   D+   AQTG+GKT  F+ P+L+
Sbjct: 188 TFSNPPLDDHLISNIELARYKVPTPVQKYSVPIVMGGRDLMACAQTGSGKTGGFLFPILS 247

Query: 62  ILE----------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105
                               GR R   P +LIL PTREL +Q+ D   K+     +   +
Sbjct: 248 QAFKTGPSPIPATNQGPGGYGRQRKAYPTSLILAPTRELVSQIYDESRKFAYRSWVRPCV 307

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF P
Sbjct: 308 VYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEP 367

Query: 166 YIQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
            I+ I           RQTL+FSAT    +Q+++ +FL++   + V    ST+E I    
Sbjct: 368 QIRRIVEGEDMPNVQDRQTLMFSATFPGYIQQLARDFLKDYIFLSVGRVGSTSENITQRV 427

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
           +    +  K        L S       +IF   K+N   L   L+ Q     +IHG+  Q
Sbjct: 428 MEVKHRDDKISH--LLDLLSTHGGGLTLIFVETKRNADELSDFLQNQNLPATSIHGDRTQ 485

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG 
Sbjct: 486 RERERALEMFRTGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGN 545

Query: 342 HGKAFTLVAKED----IKHIDAIEKLIEKKVD 369
            G A      +D     + +  I K  ++ + 
Sbjct: 546 TGIATAFFDMKDNSGVAQELLNILKEAKQDIP 577


>gi|332202625|gb|EGJ16694.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA41317]
          Length = 461

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 128/435 (29%), Positives = 202/435 (46%), Gaps = 23/435 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +   +  +
Sbjct: 61  QQLDEASDSVQAV---ITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T             
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  +    +
Sbjct: 237 --TQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWLNGD-----------LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
             +EKL  K    +  D            ++     +K+DI      +K     +KS   
Sbjct: 355 RELEKLGIKFSPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKR---KKSNRV 411

Query: 407 DRRKKNYSSQKSHIP 421
            RRK N    KS + 
Sbjct: 412 IRRKFNGRLMKSAVK 426


>gi|254430075|ref|ZP_05043782.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
 gi|196196244|gb|EDX91203.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
          Length = 428

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 134/374 (35%), Positives = 208/374 (55%), Gaps = 10/374 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L   ++  + D+G+   TPIQ + +   L   D  G AQTGTGKTA+F++ ++  
Sbjct: 25  FHDFDLHLDLMHGIADSGFQYCTPIQAEVLTHTLAGADAIGRAQTGTGKTAAFLITVIND 84

Query: 63  LEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L K    V+     PR LI+ PTRELA Q+  + +   K+ +L V  ++GG+ F  Q ++
Sbjct: 85  LLKHPIDVQRFAGEPRALIVAPTRELAMQIEKDAKVLAKHTDLQVMSVVGGMNFNRQQER 144

Query: 119 LERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175
           L+    D+L+ TPGR+LD   R  L ++ +E LV+DEADRMLDMGFIP ++ I  + P  
Sbjct: 145 LQNKLIDILVATPGRLLDFAKRRDLWLDRVEFLVLDEADRMLDMGFIPDVKRIVGMTPKS 204

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT LFSAT  D++  +S  + Q+ + +E+     T +T+E     T      K    
Sbjct: 205 QYRQTQLFSATFNDDVMNLSRRWTQDAEVVEIEPTQVTTDTVEQKVYITNTDDKFKLLYN 264

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                +   M   I+F N++     +   L K+G  V  I G++ Q  R K L  F+ G 
Sbjct: 265 L---ITGMNMDKVIVFANRRDITRRVSDRLHKKGLKVSLISGDVPQTQRSKTLERFRAGD 321

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q+++A+D+A RG+ I  V HV N+++P   E+Y+HRIGRTGRAG  G + +   ++D  
Sbjct: 322 LQVLIATDVAGRGIHIDGVSHVVNYNLPEDPEDYVHRIGRTGRAGASGMSISFACEDDAF 381

Query: 356 HIDAIEKLIEKKVD 369
            +  +E  I  K++
Sbjct: 382 LLPELENAIGMKLE 395


>gi|219521150|gb|AAI72016.1| Ddx3x protein [Mus musculus]
          Length = 661

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 130/396 (32%), Positives = 208/396 (52%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 180 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 239

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 240 QIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 299

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 300 YGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 359

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 360 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 419

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 420 WVEEIDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 477

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 478 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 537

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   + +I     +  L+ +    +   L ++
Sbjct: 538 GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 573


>gi|6753620|ref|NP_034158.1| ATP-dependent RNA helicase DDX3X [Mus musculus]
 gi|2500528|sp|Q62167|DDX3X_MOUSE RecName: Full=ATP-dependent RNA helicase DDX3X; AltName:
           Full=D1Pas1-related sequence 2; AltName: Full=DEAD box
           RNA helicase DEAD3; Short=mDEAD3; AltName: Full=DEAD box
           protein 3, X-chromosomal; AltName: Full=Embryonic RNA
           helicase
 gi|407996|gb|AAA53630.1| RNA helicase [Mus musculus]
 gi|1835122|emb|CAA86261.1| dead-box RNA helicase [Mus musculus]
 gi|74187753|dbj|BAE24540.1| unnamed protein product [Mus musculus]
 gi|74190343|dbj|BAE37257.1| unnamed protein product [Mus musculus]
 gi|123858229|emb|CAM15722.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Mus
           musculus]
 gi|1098036|prf||2115205A RNA helicase
          Length = 662

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 130/396 (32%), Positives = 208/396 (52%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 241 QIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 300

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 301 YGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 360

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 361 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 420

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 421 WVEEIDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   + +I     +  L+ +    +   L ++
Sbjct: 539 GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 574


>gi|134299705|ref|YP_001113201.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134052405|gb|ABO50376.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 438

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 113/419 (26%), Positives = 199/419 (47%), Gaps = 15/419 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L +   +   +   G   PT IQ   IPL L+  D+ G +QTG+GKT +++LP+  
Sbjct: 4   SFDKLEIDADIAEGLSKQGIKNPTAIQKVAIPLALKNKDIIGQSQTGSGKTLAYLLPIFQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119
            ++  +   +    LIL PT EL  Q+    +    N    +   ++IG +    Q +KL
Sbjct: 64  KIDSSKRETQ---ALILAPTHELVMQIDKQIKTLSSNAGLTINSTVMIGEVNIVRQIEKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +++ + GR+L+   R K+  + I+ +VIDEAD +LD   +  ++++       RQ
Sbjct: 121 KEKPHIIVGSTGRVLELIKRKKISSHTIKTIVIDEADMLLDQNNLAGVKDVIKTTMRDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++FSA M       S+   ++ + I +         I H ++       +    + + L
Sbjct: 181 LMIFSAYMNQRAMAESKELTKDAEVIIIEDEILVNPNITHLYLIAEQ---RDKMKVLRKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    K  IIF N+ +++      L+   F V  I+     +   +          QL+
Sbjct: 238 IAATKPKKAIIFVNKMEDIQTTALKLQYHNFKVSEIY-GKAAKEERQKAMEGFRSEGQLL 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLDI  V H+FN D+P  ++ Y+HR+GRTGR G+ G A ++V + +   +  
Sbjct: 297 VASDMAARGLDINGVTHIFNLDLPEDSKEYLHRVGRTGRKGKLGTAISIVTERETALLKK 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST--GFDRRKKNYSSQ 416
            E+  +  ++  N     L  P+      + +  +K +    KST  G   +K+NYS+ 
Sbjct: 357 YEREFKIIIEEKNVFKGVLVDPVR----GKSSFTKKRDKALSKSTTKGSISKKENYSAN 411


>gi|295692275|ref|YP_003600885.1| ATP-dependent RNA helicase [Lactobacillus crispatus ST1]
 gi|295030381|emb|CBL49860.1| ATP-dependent RNA helicase [Lactobacillus crispatus ST1]
          Length = 453

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 132/440 (30%), Positives = 207/440 (47%), Gaps = 13/440 (2%)

Query: 1   MD--FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           M+  F D  + P +   +    + KPT +Q K IP +L    V   A TG+GKT ++++P
Sbjct: 1   MNNIFIDSRIKPAIQAGLKKIHFEKPTKVQEKVIPAMLSDLSVVVQAATGSGKTHAYLVP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +   +E+ +  V+   TL      +   +VA         +     L  G        K 
Sbjct: 61  IFNEIEEDKRYVQAIVTLPSRELADQLYKVARQLRDAAGMHFSIAHLAGGTDRERQLEKY 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 ++I TPGR+LD   +    ++ ++  VIDEAD  LDMGF+  I  + + +P   
Sbjct: 121 QNNTPQLVIATPGRLLDFVQKKVFAVDQVKTFVIDEADMTLDMGFLNDIDQVAAKLPKDV 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q   FSAT+  +L      ++ +P  I ++ PS  A TI           SK    +   
Sbjct: 181 QIAAFSATIPVKLSNFLRKYMAHPDEIVIDNPSVIAPTI---KNDLLDIGSKDRKNVLYK 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +       ++F N K+ V  L + L+ QG  V  IHG + +R R + L   ++G  Q 
Sbjct: 238 LLTMGQPYLALVFANTKQKVDELTNYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQYQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARGLDI  V  V N+++P   E  IHRIGRTGR G  G A TL+ +E++  I+
Sbjct: 298 VVASDLAARGLDIDGVSLVVNYEIPRDIEFVIHRIGRTGRNGLSGHAITLIREEEMNRIE 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF-----DRRKKNY 413
            +EK +    D++      L P   K   ++ N   KN  +  K  G+      +RK  Y
Sbjct: 358 ELEK-MGVHFDFVEIKNGELVP--RKHYRSRENRQSKNRKLDTKLVGYVKKEKRKRKPGY 414

Query: 414 SSQKSHIPLKESEKISKLQQ 433
             +      +++ +  KL+Q
Sbjct: 415 KKKIKRAIQEDNRQKRKLEQ 434


>gi|148226262|ref|NP_001080283.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Xenopus laevis]
 gi|27924277|gb|AAH44972.1| Pl10-prov protein [Xenopus laevis]
          Length = 697

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 132/395 (33%), Positives = 210/395 (53%), Gaps = 21/395 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ +   ++  +    Y +PTP+Q   IP+++ + D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 223 FQDVDMGEIIMGNIQLTRYTRPTPVQKHAIPIIIGKRDLMACAQTGSGKTAAFLLPILSQ 282

Query: 63  LE---------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
           +                +   R + P +L+L PTRELA Q+ +   K+     +   ++ 
Sbjct: 283 IYADGPGDAMKHLKDNGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVY 342

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P I
Sbjct: 343 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 402

Query: 168 Q----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
           +      T      RQT++FSAT   E+Q ++ +FL     + V    ST+E I    V 
Sbjct: 403 RRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVVW 462

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
                 +   L       +D++   ++F   KK    L   L  +G++  +IHG+  QR 
Sbjct: 463 VEEMDKRSFLLDLLNATGKDSL--TLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRD 520

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  G
Sbjct: 521 REEALHQFRSGKCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 580

Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            A +   +++I     +  L+ +    +   L ++
Sbjct: 581 LATSFFNEKNINITKDLLDLLVEAKQEVPSWLENM 615


>gi|34582313|sp|Q8K301|DDX52_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX52; AltName:
           Full=ATP-dependent RNA helicase ROK1-like; AltName:
           Full=DEAD box protein 52
 gi|20809366|gb|AAH29094.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Mus musculus]
          Length = 598

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 111/440 (25%), Positives = 207/440 (47%), Gaps = 27/440 (6%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     ++ +++  +LDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 163 TFQQLDQEYKINSRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 222

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L++   +      L++ PTRELA+Q+     K  +        +    I  +   
Sbjct: 223 PILMQLKQPTNKGFR--ALVISPTRELASQIHRELIKISEGTGFRIHMIHKAAIAAKKFG 280

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++    +    ++  ++E LV+DE+D++ + G   + +      
Sbjct: 281 PKSSKKFDILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFREQLASIF 340

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT   ++++  +  L N   + +   +S  ET+E   +   ++  K
Sbjct: 341 LACTSPKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSETGK 400

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +        ++F    +    L H L  +G +V  IH    Q+ R   + +
Sbjct: 401 LLAMRELVKKGFKPP--VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHS 458

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   
Sbjct: 459 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFT 518

Query: 351 KEDIKHIDAIEKLIEKK----VDWLNG--------DLSSLNPPLEKIDIAQHNHARKNNP 398
           ++D   + ++  +I++      +++ G            +  PLE+  I           
Sbjct: 519 EDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESICTTPKYFLEQA 578

Query: 399 IPQKSTGFDRRKKNYSSQKS 418
             +K  G + +KK    +KS
Sbjct: 579 KQKKVAGQNSKKKETLKEKS 598


>gi|154324134|ref|XP_001561381.1| eukaryotic initiation factor 4A [Botryotinia fuckeliana B05.10]
 gi|160395528|sp|A6RJ45|IF4A_BOTFB RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|150842695|gb|EDN17888.1| eukaryotic initiation factor 4A [Botryotinia fuckeliana B05.10]
          Length = 398

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 133/377 (35%), Positives = 210/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P+++  V   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 26  SFDTMNLKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     V+  + LIL PTRELA Q+       G   N+     IGG       K L+ 
Sbjct: 86  KLDPN---VKQCQALILAPTRELAQQIQKVVVAIGDFMNVECHACIGGTSVRDDMKALQD 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I  L+P + Q +
Sbjct: 143 GPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 203 LLSATMPQDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEDWKLDT--LSDLYE 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A
Sbjct: 261 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIA 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 321 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 381 QFYSTQIEEMPMNVADL 397


>gi|313229621|emb|CBY18436.1| unnamed protein product [Oikopleura dioica]
          Length = 962

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 121/389 (31%), Positives = 198/389 (50%), Gaps = 14/389 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D+ L P+++  +    Y KPTPIQ   + ++    D+   AQTG+GKTA+ ++P++ 
Sbjct: 531 TFSDMKLCPEIMENLQRMKYTKPTPIQQYAVSILGSGSDLMATAQTGSGKTAAMMIPIIN 590

Query: 62  ILEK------GRARVRMPRTLILEPTRELAAQVAD-NFEKYGKNYNLTVALLIGGIPFEA 114
            L+       G    +    +++ PTRELA Q+ D  ++  G+N N+   L  GG     
Sbjct: 591 YLKMSNIGSRGYNACQKVDCIVVAPTRELATQLYDECYKFCGRNTNVVPGLCYGGTGTRE 650

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q++++  G +++I TPGR+ D   +G +  +  + LV+DEADRMLD GF P I+ I + +
Sbjct: 651 QSQRIREGCNIVIGTPGRMKDFLEKGVIDASEAQFLVLDEADRMLDQGFGPDIREINAYL 710

Query: 175 PFTRQTLL----FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
           P           FSAT    +Q  ++++L+             A T          +  K
Sbjct: 711 PPKDTGKRTTALFSATFETAIQSAAQDYLRPNYIFVAIGIIGGANTAVTQQFEQLQKREK 770

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
               ++  +  Q+  K  +IF   K    +L   L   G     IHG+  QR R + +++
Sbjct: 771 FNRTVE--ICKQNQGKRTLIFVATKIFADSLGSMLVGDGIKATTIHGDRQQRDREQAIND 828

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV- 349
            K   + ++VA+D+AARG+DI DV  V NFD P   E+YIHRIGRT R G+ G A T + 
Sbjct: 829 LKANRMHVLVATDVAARGIDIDDVEVVINFDFPKELESYIHRIGRTARKGKKGLAITFID 888

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           A +D +H  ++ K+ +     +   L  +
Sbjct: 889 AMKDRQHASSLVKICQDAKQTVPPFLQQM 917


>gi|281208721|gb|EFA82896.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 803

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 166/493 (33%), Positives = 248/493 (50%), Gaps = 39/493 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  +  AV   G+  PTPIQ KTIP   Q       A TG+GKTA+F+LP+L 
Sbjct: 182 TFQELHLSRPLQKAVQKLGFTMPTPIQAKTIPPSTQ------CATTGSGKTAAFLLPILE 235

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L       R  R L+L PTRELA Q     E   +  N+T  L++GG+  + Q  +L +
Sbjct: 236 RLLYRDVDNRAIRVLVLLPTRELALQCQSVLENLAQFTNITSCLVVGGLSNKVQEVELRK 295

Query: 122 GADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             DV+I TPGR++DH      +  +++EILV+DEADR+LDMGF   ++ I    P  RQ+
Sbjct: 296 RPDVVIATPGRLIDHLLNAHDVGLDDLEILVLDEADRLLDMGFKDELEKIVESCPANRQS 355

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY-SKKCALLQQLL 239
           LLFSAT++DE++ +++  L+ P R+ V+     A T+E  FV         + ALL  L 
Sbjct: 356 LLFSATLSDEVKTLAKLSLKQPIRVAVDALYQVASTLEQEFVKIRPTQLGDRPALLLSLA 415

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIF   KK V  LC      G S   +HG++ Q  R + L  F++G +Q +
Sbjct: 416 SRVFNTGGTIIFFKSKKEVHRLCIIFGLAGLSAAELHGDLSQEQRFESLQLFRDGKVQFL 475

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +ASD+AARGLD+  V  V N+++P     YIHR+GRT RAG  G+A + V + D K +  
Sbjct: 476 LASDVAARGLDVLGVKTVINYNIPRNLAQYIHRVGRTARAGAQGRACSFVTEGDRKILKD 535

Query: 360 I-----------------EKLIEKKVDWLNGDLSS-LNPPLEKIDIAQ-HNHARKNNPIP 400
           I                  K    K+D +  D+ S +   L+++DI +     RK   + 
Sbjct: 536 IVSRAKTKAKSRTVSQESVKYWRNKIDEMADDIKSIIKEELKEMDIRKAEKEIRKVEKLI 595

Query: 401 QKSTGFDR--RKKNYSSQKSHIPLKESEKI-------SKLQQDIQENDADSLGFRGNMPA 451
             S+       K+ +++       KE+ KI        +L++  QE      G + +   
Sbjct: 596 STSSSKSSSMEKEWFATNSEKAKAKEAWKIQEGIIDPEELKRQKQEELDKKAGKKADRDP 655

Query: 452 FM---LPKNRGKL 461
           ++     K R K+
Sbjct: 656 YLGLSRRKRRSKM 668


>gi|195453216|ref|XP_002073690.1| GK14240 [Drosophila willistoni]
 gi|194169775|gb|EDW84676.1| GK14240 [Drosophila willistoni]
          Length = 663

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 113/392 (28%), Positives = 197/392 (50%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            F+ L   +S   +  + + G+ + T IQ K+I  +L+  D+ G AQTG+GKT +F++P 
Sbjct: 171 SFSSLKGCVSEATLQGIQEMGFTEMTEIQSKSITPLLKGRDLVGAAQTGSGKTLAFLIPA 230

Query: 60  LTILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K R   R     +I+ PTREL+ Q     ++   +++ T  L++GG   + +++K
Sbjct: 231 VELINKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEK 290

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G ++L+ TPGR +    N    L  N++ L+IDE DR+L++GF   ++ I +L+P  
Sbjct: 291 LGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPTR 350

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T  +  +S+  L+          +    T+E          S+K  L+  
Sbjct: 351 RQTMLFSATQTARIDALSKLALKKEPIYVGVHDNEANATVEGLEQGYIVCPSEKRLLVLF 410

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V             V +IHG   Q  R      F      
Sbjct: 411 TFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESG 470

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
           +++ +D+AARGLDIP V  +  +D P+    YIHR+GRT R  G+ G A  L+  E++  
Sbjct: 471 ILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGQSGHALLLMRPEELGF 530

Query: 357 IDAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
           +  + K  +  ++        +  +   LEK+
Sbjct: 531 LRYL-KAAKVPLNEFEFSWQKIVDIQLQLEKL 561


>gi|168235783|ref|ZP_02660841.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168819458|ref|ZP_02831458.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194736572|ref|YP_002114683.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194712074|gb|ACF91295.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197291228|gb|EDY30581.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|205343740|gb|EDZ30504.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320085851|emb|CBY95627.1| ATP-dependent RNA helicase DBP2 [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 457

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 140/401 (34%), Positives = 222/401 (55%), Gaps = 10/401 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF AQ   L+
Sbjct: 64  RIDVTLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPETRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D +  +S    Q P RIE++T     + +       +   + +   L Q L 
Sbjct: 181 LLFSATWPDAIAAISGRVQQQPIRIEIDTV----DALPAIEQQFFETSAHEKISLLQTLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN KK+   +C +L   G S  A+HG+++QR R + L  F  G+ +++V
Sbjct: 237 SQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +  A E+ +  + +
Sbjct: 297 ATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANIL 356

Query: 361 EKLIEKKVDWLNGDL-SSLNPPLEKIDIAQHNHARKNNPIP 400
            ++++ K++WLN     SL P   ++     +  +K    P
Sbjct: 357 SEMLQLKLNWLNAPARQSLLPLAAEMATLCIDGGKKAKMRP 397


>gi|73996618|ref|XP_863098.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 6 [Canis familiaris]
          Length = 806

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 134/428 (31%), Positives = 196/428 (45%), Gaps = 37/428 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D  L P ++  +   GY +PTPIQ + IP+ LQ  D+ G+A+TG+         +  
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSD--------LAR 443

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                    + P  +IL PTRELA Q+ +   K+GK   +    +IGGI  E Q  +L  
Sbjct: 444 WEGSQWQINQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRM 503

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P + Q  
Sbjct: 504 GCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKP 563

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----------------------ETIE 218
                   E    +    ++  R  V   ++                         +  E
Sbjct: 564 DTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHE 623

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
                 +     +       +  Q      IIF NQKK    L  SLEK G++ C +HG 
Sbjct: 624 RVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGG 683

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
             Q  R   LSN K G   ++VA+D+A RG+DI DV  V N+D+    E+YIHRIGRTGR
Sbjct: 684 KGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGR 743

Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           AG+ G A T + KED      +++ I      L   +SS  P L     AQH        
Sbjct: 744 AGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHKPGTILTK 797

Query: 399 IPQKSTGF 406
             ++ T F
Sbjct: 798 KRREETIF 805


>gi|322374632|ref|ZP_08049146.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C300]
 gi|321280132|gb|EFX57171.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C300]
          Length = 447

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 131/452 (28%), Positives = 203/452 (44%), Gaps = 43/452 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +V A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKKFQFKNYIVEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +   +  +
Sbjct: 61  QQLDETSDSVQAV---ITAPSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  VIDEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVIDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +          
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 237 --TQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL-------------------------IEKKVDWLNGDLSSL---------NPPLE 383
             +EKL                          EKK D L+ ++  L             +
Sbjct: 355 RELEKLGIKFTPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKKKKVKPGYKK 414

Query: 384 KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           KI  A     RK      ++ G   RK    +
Sbjct: 415 KIKWAVDEKRRKTKRAENRARGRAERKAKRQT 446


>gi|226528292|ref|NP_001149406.1| spliceosome RNA helicase BAT1 [Zea mays]
 gi|195627032|gb|ACG35346.1| spliceosome RNA helicase BAT1 [Zea mays]
          Length = 399

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 148/348 (42%), Gaps = 2/348 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 49  FRDFLLKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQ 108

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           ++    +V                   + F KY     + V      I       K E  
Sbjct: 109 IDPVAGQVAALVLCHTRELAYQICHEFERFSKYLTEVKVAVFYGGVHIRKHKDLLKNECP 168

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    ++   L N    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 169 HIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 228

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+P  I V+  +              ++  K        L   
Sbjct: 229 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNR--KLNDLLDA 286

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L +  F    IH  + Q  R+    NFKEG  +++VA+
Sbjct: 287 LDFNQVVIFVKSVSRAAELNKLLCECNFPSICIHSGMTQEERLTRYKNFKEGHKKILVAT 346

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           DL  RG+DI  V  V N+D+P+ A+ Y+HR+GR GR G  G A T V+
Sbjct: 347 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 394


>gi|171687533|ref|XP_001908707.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943728|emb|CAP69380.1| unnamed protein product [Podospora anserina S mat+]
          Length = 396

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L  +++  +   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 24  SFDEMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++  + LIL PTRELA Q+       G   N+     IGG       K L  
Sbjct: 84  KIDTS---LKQCQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVRDDMKALGE 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I  L+P + Q +
Sbjct: 141 GPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 201 LLSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A
Sbjct: 259 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 379 QFYSTQIEEMPMNVADL 395


>gi|197251196|ref|YP_002146376.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197214899|gb|ACH52296.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 457

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 139/401 (34%), Positives = 222/401 (55%), Gaps = 10/401 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF AQ   L+
Sbjct: 64  RIDVTLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  +S    Q P RIE++T     + +       +   + +   L Q L 
Sbjct: 181 LLFSATWPEAIAAISGRVQQQPMRIEIDTV----DALPAIEQQFFETSAHEKISLLQTLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN KK+   +C +L   G S  A+HG+++QR R + L  F  G+ +++V
Sbjct: 237 SQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +  A E+ +  + +
Sbjct: 297 ATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANIL 356

Query: 361 EKLIEKKVDWLNGDL-SSLNPPLEKIDIAQHNHARKNNPIP 400
            ++++ K++WLN     SL P   ++     +  +K    P
Sbjct: 357 SEMLQLKLNWLNAPARQSLLPLAAEMATLCIDGGKKAKMRP 397


>gi|66911756|gb|AAH97636.1| Ddx10 protein [Xenopus laevis]
          Length = 717

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 130/446 (29%), Positives = 214/446 (47%), Gaps = 14/446 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  LS K +  +++A Y  PT IQ +TI L LQ  DV G A+TG+GKT +F++P L  
Sbjct: 76  FSDFPLSKKTLRGLVEAQYRLPTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFIIPALEC 135

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         LI+ PTRELA Q  +   K G+N+  +  L+IGG   + +   + R
Sbjct: 136 LYRQQWTSDDGLGVLIISPTRELAYQTFEVLRKVGRNHEFSAGLVIGGKDLKQETACIHR 195

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +           +N+ +LV+DEADR+LDMGF   +  I   +P  RQTL
Sbjct: 196 TNILICTPGRLLQHMDETSFFHASNLHMLVLDEADRILDMGFADTMNAIIENLPKKRQTL 255

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L++P  + V+   +   T             ++   L      
Sbjct: 256 LFSATQTKSVKDLARLSLKDPAYVWVHE-KAKFSTPATLEQNYIVCELQQKINLLYSFIR 314

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               K  I+F +  K V  L  +    + G  V  +HG   Q  RM++ ++F      ++
Sbjct: 315 NHLKKKSIVFFSSCKEVQYLFRAFCRLRPGIPVLVLHGKQQQTKRMEVYNDFIRKKSAVL 374

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V   D P  A  YIHR+GRT R    G+A  ++   ++K +  
Sbjct: 375 FATDIAARGLDFPAVSWVLQLDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEVKGMA- 433

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
            ++L EKKV      ++    P + +D+      R    + Q+    +  ++ + S    
Sbjct: 434 -KQLEEKKVPINEIKIN----PEKLLDV----QGRLEAFLAQEQDLKETAQRCFVSYLRS 484

Query: 420 IPLKESEKISKLQQDIQENDADSLGF 445
           + L +++++  + +      A SLG 
Sbjct: 485 VYLMKNKEVFDVFKLPLTPYAQSLGL 510


>gi|145233847|ref|XP_001400296.1| ATP-dependent RNA helicase eIF4A [Aspergillus niger CBS 513.88]
 gi|134034144|sp|A2QEN5|IF4A_ASPNC RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|134057232|emb|CAK44496.1| unnamed protein product [Aspergillus niger]
          Length = 398

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 205/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P+++  V   G+ +P+ IQ + I  ++  HDV   AQ+GTGKTA+F +  L 
Sbjct: 26  SFDSMDLKPELLRGVYAYGFERPSAIQQRAIKPIIAGHDVIAQAQSGTGKTATFSISALQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++    ++  + LI+ PTRELA Q+       G   N+     IGG         L  
Sbjct: 86  KIDQ---ELKACQALIVAPTRELAQQIQKVVVAIGDFMNIECHACIGGTNVRDDMNALRA 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGRI D   R  L  + +++ ++DEAD ML  GF   I +I  L+P + Q  
Sbjct: 143 GPQVVVGTPGRIHDMIERRVLKTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQSTQVT 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 203 LLSATMPQDVLEVTTKFMRDPIRILVKKQELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A
Sbjct: 261 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQGQRDVIMKEFRSGSSRVLIA 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 321 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 381 QFYSTQIEEMPMNVADL 397


>gi|302536730|ref|ZP_07289072.1| ATP-dependent RNA helicase [Streptomyces sp. C]
 gi|302445625|gb|EFL17441.1| ATP-dependent RNA helicase [Streptomyces sp. C]
          Length = 596

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 140/428 (32%), Positives = 224/428 (52%), Gaps = 21/428 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+ P+   A+   G V P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L 
Sbjct: 62  TFRELGIFPETAEALEAVGIVSPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLE 121

Query: 62  I----------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
                        +       P+ L++ PTREL  QV ++    GK  N+ V  + GG  
Sbjct: 122 RVVVPADVEAGRARPDQLTDSPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRA 181

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q + L++G DV++ TPGR+LD   + KL ++ ++ LV+DEAD MLD+GF+P ++ I 
Sbjct: 182 YEPQVEALKKGVDVIVGTPGRLLDLAGQKKLDLSRVKALVLDEADEMLDLGFLPDVEKIM 241

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +L+P  RQT+LFSATM   +  ++  ++  P  I   +      T+ +     +  ++  
Sbjct: 242 NLLPAKRQTMLFSATMPGAVIGLARRYMSQPTHIRAVSEDGEGATVANITQHVFRAHNMD 301

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L   +   +     +IFC  K+   ++   LE++GF+  A+HG++ Q +R + L  F
Sbjct: 302 KPELVSRILQAEGRGLAMIFCRTKRTAADIAEQLERRGFASGAVHGDLGQGAREQALRAF 361

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + ++HR+GRTGRAG  G A TLV  
Sbjct: 362 RNGKVDVLVCTDVAARGIDVEGVTHVINYQTPEDEKTFLHRVGRTGRAGNKGTAVTLVDW 421

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           +DI     I K +E             + P E    + H + + N P   K     R ++
Sbjct: 422 DDIPRWQLINKALEL----------DFHEPEETYSTSPHLYEQLNIPAGTKGI-LPRAER 470

Query: 412 NYSSQKSH 419
             +  K+ 
Sbjct: 471 TRAGLKAE 478


>gi|302505192|ref|XP_003014817.1| hypothetical protein ARB_07378 [Arthroderma benhamiae CBS 112371]
 gi|291178123|gb|EFE33914.1| hypothetical protein ARB_07378 [Arthroderma benhamiae CBS 112371]
          Length = 595

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 104/406 (25%), Positives = 160/406 (39%), Gaps = 26/406 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL P ++  +   GY+ PTP+Q   IP VL  HD+  +AQTG+GKTA+F++P+L+
Sbjct: 128 SFEDAGLHPIMLNNIKLCGYIVPTPVQAYCIPAVLTGHDLIAVAQTGSGKTAAFLIPVLS 187

Query: 62  ILEKGRARVRMPRTL-------------------ILEPTRELAAQVADNFEKYGKNYNLT 102
            L     ++  PR                     I+ PTRELA Q+ D   +      L 
Sbjct: 188 KLMGKAKKLAAPRPDLGNGFNESLDAVRAEPLVLIVVPTRELATQIFDEARRLCYRSMLR 247

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
             ++ GG P   Q  +L++G D+LI TPGR++D   +  +L        I +    L   
Sbjct: 248 PCVIYGGGPSRDQRMELQKGCDILIATPGRLIDFMEKPNILSLCRVRYTIIDEADELLKS 307

Query: 163 FIPYIQNIT---SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
                         +           + T                           T  +
Sbjct: 308 DWDVEFTKILAGGDINEDADHRYMMFSATFNKGCRQVARKFLANDYVRIRIGRVGSTHLN 367

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                              L         I+F N K     +   L   G    +IH + 
Sbjct: 368 VTQQLVWAEENMKKKCLYDLLMAMPPSRTIVFVNNKTQADLIDDFLFNMGLPSTSIHSDR 427

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPN----RAENYIHRIGR 335
            QR R   +  FK     +++A+ ++ARGLDI +V HV N+D+P+      + YIHRIGR
Sbjct: 428 TQREREDAIRAFKTAKSPILIATAVSARGLDIKNVMHVVNYDLPSVNHGGIDEYIHRIGR 487

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           T R G  G A +    ++      + K++ +    +   L S  PP
Sbjct: 488 TARIGNPGLATSFYNDKNSDIASDLVKILVESKQVIPDFLQSEVPP 533


>gi|116003979|ref|NP_001070349.1| probable ATP-dependent RNA helicase DDX10 [Bos taurus]
 gi|115305270|gb|AAI23580.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Bos taurus]
 gi|296480316|gb|DAA22431.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Bos taurus]
          Length = 876

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 132/465 (28%), Positives = 217/465 (46%), Gaps = 15/465 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P +  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +             LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +++  
Sbjct: 131 LYRLQWTSADGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINN 190

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +            N+++LV+DEADR+LDMGF   +  I   +P  RQTL
Sbjct: 191 INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTL 250

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L+NP+ + V+   +   T             ++   +      
Sbjct: 251 LFSATQTKSVKDLARLSLKNPEYVWVHE-KAKYSTPATLEQNYIVCELQQKISVLYSFLR 309

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC--AIHGNIDQRSRMKILSNFKEGTIQLM 299
               K  I+F +  K V  L     +    V   A+HG   Q  RM++ + F      ++
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSLLALHGRQQQMRRMEVYNEFVRKRAAVL 369

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   + K +  
Sbjct: 370 FATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEKGM-- 427

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +++L++KKV      ++    P + ID+      +  + + Q     +R ++ + S    
Sbjct: 428 VQQLLQKKVPVKEIKIN----PEKLIDV----QKKLESFLAQDQDLKERAQRCFISYIRS 479

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
           + L + ++I  + +    + A SLG     P     +   K   K
Sbjct: 480 VYLMKDKEIFDVSKLPISDYALSLGL-AVAPRIRFLQRMQKQPSK 523


>gi|284992633|ref|YP_003411187.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus
           obscurus DSM 43160]
 gi|284065878|gb|ADB76816.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus
           DSM 43160]
          Length = 611

 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 134/364 (36%), Positives = 206/364 (56%), Gaps = 2/364 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+D  + P VV A+ +AG  +   IQ  T+PL L  +D+ G A+TGTGKT  F +PML  
Sbjct: 110 FSDFDVHPDVVAALAEAGITRTFAIQELTLPLALAGNDLIGQARTGTGKTLGFGVPMLQR 169

Query: 63  LEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +         +P+ L++ PTREL  QV+ +    G    + V  + GG  FE Q   L+ 
Sbjct: 170 VVPPAEGGDGVPQALVVVPTRELCVQVSRDLATAGSKRGIRVQAIYGGRAFEPQVAALQA 229

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G ++++ TPGR+LD   RG L++  +++LV+DEAD MLD+GF+P I+ I ++VP  RQT+
Sbjct: 230 GVEIVVGTPGRLLDLAQRGDLILGKVKVLVLDEADEMLDLGFLPDIERILAMVPDKRQTM 289

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +  +S +F+  P  I  +  +    T+       Y  ++     L   +  
Sbjct: 290 LFSATMPGPIVTLSRSFMTQPTHIRAHG-NDEGSTVPQTTQFIYRAHNLDKPELLSRVLQ 348

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++FC  K+    +   L ++GF+  A+HG++ Q +R + L  F+ G + ++VA
Sbjct: 349 ARDRSLVMVFCRTKRTAQKVADELVERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLVA 408

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAG  G A TLV  +DI     I 
Sbjct: 409 TDVAARGIDVTGVSHVVNYQCPEDEKTYLHRIGRTGRAGSEGVAVTLVDWDDIPRWQLIN 468

Query: 362 KLIE 365
           K +E
Sbjct: 469 KALE 472


>gi|255950086|ref|XP_002565810.1| Pc22g19070 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211592827|emb|CAP99195.1| Pc22g19070 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 682

 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 135/398 (33%), Positives = 210/398 (52%), Gaps = 23/398 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F +  L   ++  +  A YV PTP+Q  ++P+V+   D+   AQTG+GKT  F+ P+  
Sbjct: 200 QFTNPPLDDHLIANIKLASYVIPTPVQKYSVPIVMNGRDLMACAQTGSGKTGGFLFPILS 259

Query: 60  ---------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA 104
                                GR R   P +LIL PTREL +Q+ +   K+     +   
Sbjct: 260 QAFQNGPSAAPVQGGGGQFSYGRQRKAYPTSLILAPTRELVSQIFEEARKFAYRSWVRPC 319

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
           ++ GG    +Q +++ERG D+L+ TPGR++D   RG++ + NI+ LV+DEADRMLDMGF 
Sbjct: 320 VVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLANIKYLVLDEADRMLDMGFE 379

Query: 165 PYIQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
           P I+ I       V   RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I   
Sbjct: 380 PQIRRIVEGEDMPVVDNRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQK 439

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
                    +       +L +  +    +IF   K+   +L   L  Q F   AIHG+  
Sbjct: 440 VEYVEDADKRSVL--LDILHTHGSTGLTLIFVETKRMADSLSDFLINQRFPATAIHGDRT 497

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           QR R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG
Sbjct: 498 QRERERALELFRNGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAG 557

Query: 341 RHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
             G A     + +   +  + +L+++    +   L S+
Sbjct: 558 NTGIATAFFNRGNRGVVRDLLELLKEAHQEVPAFLESI 595


>gi|322502575|emb|CBZ37658.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 803

 Score =  136 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 125/380 (32%), Positives = 199/380 (52%), Gaps = 8/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ A+L  G+  PTPIQ K IP +LQ +DV  +A+TG+GKTA+F++PML  
Sbjct: 24  FQSFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLNT 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  A++   R L+L PTREL+ Q+  N     K  +L  A L+GG   + Q + L   
Sbjct: 84  L-KAHAKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDSMDQQFELLASN 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR+L       L + ++  LV+DEADR+ ++G  P I  I   +P + Q  L
Sbjct: 143 PDVVVATPGRLLHIMEEASLHLTSVRCLVLDEADRLFELGLQPQIGAIMQKLPESCQRAL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK-----CALLQQ 237
           FSATM   L + +   L NP  I +++    ++ ++                     +  
Sbjct: 203 FSATMPTVLAEFTSAGLHNPVVIRLDSEMKLSDQLKQSAFLVRNDEKVAALIVLLKRVLH 262

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + ++       +IF   K +V  L   L     S  A+HG +DQ +R   + +F +    
Sbjct: 263 VGEAAANNAQALIFVESKFHVEFLQMILTHYSISTSAVHGQMDQEARRLAVRSFAKRETS 322

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MV +D+AARGLD+P + +V NF  P   + ++HR+GR  RAGR G A++++  ED  + 
Sbjct: 323 VMVVTDVAARGLDLPLLDNVVNFSFPFNPKLFVHRVGRVARAGRSGTAYSIMTFEDFPYY 382

Query: 358 DAIEKLIEKKVD--WLNGDL 375
             + + I + +    + GDL
Sbjct: 383 IDLLQFIGRPLQSAPVPGDL 402


>gi|313771958|gb|EFS37924.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
          Length = 564

 Score =  136 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 139/443 (31%), Positives = 218/443 (49%), Gaps = 9/443 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L 
Sbjct: 54  SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 113

Query: 62  ILEKGRARVR-------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L++ PTRELA QV+ +           V  + GG+ +E+
Sbjct: 114 RITLPGDEGWGELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLAVYGGVGYES 173

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L+ G DV++ TPGR+LD   R  L ++++ I+V+DEAD MLD+GF+P ++N+    
Sbjct: 174 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 233

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P +RQT+LFSATM   +                   + T  T+       Y  +      
Sbjct: 234 PASRQTMLFSATMPAPI-MALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIE 292

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +   + ++  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+ G
Sbjct: 293 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDARGFKPRAIHGDLTQVAREKALKKFRHG 352

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   D+
Sbjct: 353 EATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADV 412

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                I K +  ++       S+       +DI +    +  +P  + +T   RR+  + 
Sbjct: 413 TRWKLINKALNLELSEPVETYSTSPHLYTDLDIPEDAQGQIIDP-EKAATEKKRRQHRHG 471

Query: 415 SQKSHIPLKESEKISKLQQDIQE 437
              SH             +D  +
Sbjct: 472 HDGSHHEKATRRHSRDASKDGDK 494


>gi|146099084|ref|XP_001468551.1| ATP-dependent RNA helicase [Leishmania infantum]
 gi|134072919|emb|CAM71636.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
          Length = 803

 Score =  136 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 125/380 (32%), Positives = 199/380 (52%), Gaps = 8/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ A+L  G+  PTPIQ K IP +LQ +DV  +A+TG+GKTA+F++PML  
Sbjct: 24  FQSFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLNT 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  A++   R L+L PTREL+ Q+  N     K  +L  A L+GG   + Q + L   
Sbjct: 84  L-KAHAKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDSMDQQFELLASN 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR+L       L + ++  LV+DEADR+ ++G  P I  I   +P + Q  L
Sbjct: 143 PDVVVATPGRLLHIMEEASLHLTSVRCLVLDEADRLFELGLQPQIGAIMQKLPESCQRAL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK-----CALLQQ 237
           FSATM   L + +   L NP  I +++    ++ ++                     +  
Sbjct: 203 FSATMPTVLAEFTSAGLHNPVVIRLDSEMKLSDQLKQSAFLVRNDEKVAALIVLLKRVLH 262

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + ++       +IF   K +V  L   L     S  A+HG +DQ +R   + +F +    
Sbjct: 263 VGEAAANNAQALIFVESKFHVEFLQMILTHYSISTSAVHGQMDQEARRLAVRSFAKRETS 322

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MV +D+AARGLD+P + +V NF  P   + ++HR+GR  RAGR G A++++  ED  + 
Sbjct: 323 VMVVTDVAARGLDLPLLDNVVNFSFPFNPKLFVHRVGRVARAGRSGTAYSIMTFEDFPYY 382

Query: 358 DAIEKLIEKKVD--WLNGDL 375
             + + I + +    + GDL
Sbjct: 383 IDLLQFIGRPLQSAPVPGDL 402


>gi|50842805|ref|YP_056032.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
           KPA171202]
 gi|50840407|gb|AAT83074.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
           KPA171202]
 gi|314923604|gb|EFS87435.1| DEAD/DEAH box helicase [Propionibacterium acnes HL001PA1]
 gi|314966442|gb|EFT10541.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2]
 gi|315092781|gb|EFT64757.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1]
 gi|315103751|gb|EFT75727.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2]
 gi|315105899|gb|EFT77875.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1]
 gi|327327264|gb|EGE69040.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL103PA1]
          Length = 561

 Score =  136 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 137/443 (30%), Positives = 220/443 (49%), Gaps = 9/443 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L 
Sbjct: 54  SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILL 113

Query: 62  ILEKGRARVR-------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L++ PTRELA QV+ +           V  + GG+ +E+
Sbjct: 114 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGARVLTVYGGVGYES 173

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L+ G DV++ TPGR+LD   R  L ++++ I+V+DEAD MLD+GF+P ++N+    
Sbjct: 174 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 233

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P +RQT+LFSATM   +         +         + T  T+       Y  +      
Sbjct: 234 PASRQTMLFSATMPAPI-MALARSQLHRPVHVRAEGADTQATVPDTQQFVYQAHPLDKIE 292

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +   + ++  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+ G
Sbjct: 293 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 352

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   D+
Sbjct: 353 DATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGVAVTLVDWADV 412

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                I K +  ++       S+       +DI +    +  + + + ++   RR+  + 
Sbjct: 413 TRWKLINKALNLELSEPVETYSTSPHLYTDLDIPEDAQGQIID-LEKAASEKKRRQHRHG 471

Query: 415 SQKSHIPLKESEKISKLQQDIQE 437
              SH       +     +D  +
Sbjct: 472 HDGSHHEKATRRRSRDASKDGDK 494


>gi|254572872|ref|XP_002493545.1| ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase [Pichia
           pastoris GS115]
 gi|238033344|emb|CAY71366.1| ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase [Pichia
           pastoris GS115]
 gi|328354630|emb|CCA41027.1| ATP-dependent RNA helicase [Pichia pastoris CBS 7435]
          Length = 606

 Score =  136 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 138/435 (31%), Positives = 215/435 (49%), Gaps = 23/435 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L   ++  +  + + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+
Sbjct: 139 QFTSPPLDELLLENIKLSRFTKPTPVQKYSVPIVSNHRDLMACAQTGSGKTGGFLFPVLS 198

Query: 62  ILEKG-------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
              +              R     P  L++ PTREL +Q+ D  +K+     +   ++ G
Sbjct: 199 ECFQTGPAPIEVESETVFRKHRAYPTILVMAPTRELVSQIYDEAKKFAYRSWMRPCVVYG 258

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G     Q + L  G D+L+ TPGR+ D   RGK+ +  I+ L++DEADRMLDMGF P I+
Sbjct: 259 GANIRDQMEDLILGCDLLVATPGRLSDLLERGKISLAKIKYLILDEADRMLDMGFEPQIR 318

Query: 169 NITSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           +I           R TL+FSAT   ++Q ++++FL++   + V    ST+E I    ++ 
Sbjct: 319 HIVQGCDMPSVNERHTLMFSATFPRDIQLLAKDFLKDYIFLSVGRVGSTSENITQRVLSV 378

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                K   L              +IF   K+    L H L  + F   +IHG+  Q+ R
Sbjct: 379 EDDEKKSVLLDILSSSDDIKEGLTLIFVETKRMADTLSHFLVTRNFPATSIHGDRTQQER 438

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
              L  FK G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G 
Sbjct: 439 EHALHLFKSGAAPILVATAVAARGLDIPNVTHVVNYDLPADIDDYVHRIGRTGRAGNVGI 498

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           A   V + +   I  + +L+ +    +   LS+L+      +        +     + + 
Sbjct: 499 ATAFVNRGNKNLIKGLIELLTEANQEVPQFLSALS-----REATMGRGGARGGRGGRNAY 553

Query: 405 GFD-RRKKNYSSQKS 418
           G D RR  NY  Q S
Sbjct: 554 GKDFRRSSNYPPQPS 568


>gi|254571715|ref|XP_002492967.1| Nucleolar DEAD-box protein required for ribosome assembly and
           function [Pichia pastoris GS115]
 gi|238032765|emb|CAY70788.1| Nucleolar DEAD-box protein required for ribosome assembly and
           function [Pichia pastoris GS115]
 gi|328353020|emb|CCA39418.1| ATP-dependent RNA helicase DDX27 [Pichia pastoris CBS 7435]
          Length = 761

 Score =  136 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 137/441 (31%), Positives = 223/441 (50%), Gaps = 31/441 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L LS  V+  +   GY KP+PIQ  +IP+ L   D+   AQTG+GKTA++++P++
Sbjct: 247 VTFQSLSLSRPVLKGLSTLGYTKPSPIQSASIPIGLLGKDIVAGAQTGSGKTAAYMIPII 306

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             L    +++   R ++L PTRELA QV D  +K  +  N +   L +GG+    Q ++L
Sbjct: 307 ERLLFKPSKISATRVVVLTPTRELAIQVNDVGKKISQFVNGIEFGLAVGGLNLRKQEQEL 366

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNI-EILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +  D++I TPGR +DH            EILVIDEADRML+ GF   ++ I +L+P  +
Sbjct: 367 RKRPDIVIATPGRFIDHIRNSPSFSVESVEILVIDEADRMLEDGFQEELKEILTLLPGKK 426

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE--TIEHCFVATYAQYSKKCALLQ 236
           QT+LFSATM + ++ + +  L  P RI ++ P         E   +    +         
Sbjct: 427 QTMLFSATMNNSIKDLIQLSLHKPVRIMIDPPKQAVSGLVQEFVRLRKNLEMKPALLFDI 486

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               +       ++F  +K +   L   L   G  V  +HG++ Q  R+K +++FK  T+
Sbjct: 487 LTKVNPSQQHRIVVFIARKMDAHKLRIILGLLGLKVSELHGSLTQEQRLKSITDFKNLTV 546

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE---- 352
            +++ +DLA+RGLDIP +  V N+D+P   + Y+HR+GRT RAGR G++ T V++     
Sbjct: 547 PILICTDLASRGLDIPKIEVVINYDMPKTYDIYLHRVGRTARAGREGRSITFVSESNQDR 606

Query: 353 ----------------------DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
                                 D   I+ I +LIE+K + + GD+ S     ++   A+ 
Sbjct: 607 AIVREAMKGIATAKNRALGRNVDWDSIEKIHQLIEEKAETI-GDILSEEKEEKQFLRAEM 665

Query: 391 NHARKNNPIPQKSTGFDRRKK 411
              +  N +        R K+
Sbjct: 666 EVRKGENILHHGEEIMSRPKR 686


>gi|255564033|ref|XP_002523015.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223537737|gb|EEF39357.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 956

 Score =  136 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 128/345 (37%), Positives = 197/345 (57%), Gaps = 2/345 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F   G  P+++  + DAG++ PTPIQ +T P+ L+  D+  IA+TG+GKT  +++P  
Sbjct: 488 ITFEASGFPPEILNDIRDAGFLAPTPIQAQTWPIALRNRDIVAIAKTGSGKTLGYLIPAF 547

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +        P  L+L PTRELA Q+ D   K+G++  ++   L GG P   Q K+L
Sbjct: 548 ILLRQCRNNPQNGPTVLVLAPTRELATQIQDEVIKFGRSSRVSCTCLYGGAPKGPQLKEL 607

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RGAD+++ TPGR+ D     K+    + +LV+DEADRMLDMGF P I+ I + +P  RQ
Sbjct: 608 TRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQ 667

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+++AT   E++K++ + L NP ++ + +    A               +K + L Q+L
Sbjct: 668 TLMYTATWPKEVRKIANDLLVNPVQVNIGSVDELAANKSITQYVEVVPQMEKESRLGQIL 727

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           ++Q+     II     K + +         F   AIHG+  Q  R  +L+ F+ G   ++
Sbjct: 728 RAQERGSKVII-FCSTKRLCDQLARSIGHQFGAAAIHGDKSQGERDWVLNQFRSGKSPIL 786

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
           VA+D+AARGLDI D+  V N+D P   E+Y+HRIGRTGRAG  G 
Sbjct: 787 VATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGV 831


>gi|302326490|gb|ADL25691.1| putative ATP-dependent RNA helicase DeaD [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 483

 Score =  136 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 127/430 (29%), Positives = 220/430 (51%), Gaps = 26/430 (6%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L  +    + + G+ +  P+Q K+IP +L   D+   ++TG+GKT ++ LP+L ++ +  
Sbjct: 57  LPEEQKAILREHGWTELMPVQRKSIPYMLAARDMLVQSKTGSGKTGAYALPLLQVIVRDH 116

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
                P+ LIL PTREL  QV + FEK  K   +    + GG+ +E Q K L  G  V++
Sbjct: 117 ---PYPQALILVPTRELCIQVQEEFEKLSKGTGIKSVAIFGGVSYEPQIKALRSGVHVIV 173

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR++DH  RG + + +I  LV+DEAD ML MGF P +Q I   +P      ++SAT+
Sbjct: 174 ATPGRLMDHIQRGNVDLLSIRDLVLDEADEMLSMGFYPDMQKIRKYLPKAISCTMYSATI 233

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
              ++ ++  F +        +              T     K    ++  +      ++
Sbjct: 234 PQTVKSLAREFQRPGADFLSLSYDKVIANNLEHRYYTCDVMEKDSMTIK--VLEYYNPES 291

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            +IFCN K++V  L   L   GF V A+ G++ Q  R K L+ F++  +++++ +D+AAR
Sbjct: 292 CMIFCNYKRDVSYLEQVLSGYGFEVGALSGDVAQSLREKTLNAFRDKKLKILICTDVAAR 351

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           G+D+  V HV  +D P   E Y+HR GRT RAGR G   +L+    ++ ID  +  ++  
Sbjct: 352 GIDVDHVTHVIVYDHPADHEVYVHRSGRTARAGRSGLCISLITP--VEEIDLRQTAVDFG 409

Query: 368 VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEK 427
           ++++  D      PL   +IA+    R    +       +  +K++  QK+      +E+
Sbjct: 410 INFIKMD------PLTNEEIAKKVSERTKVRL-------EEVRKHFGGQKA------TER 450

Query: 428 ISKLQQDIQE 437
           IS++   ++E
Sbjct: 451 ISRMLPLVKE 460


>gi|261414880|ref|YP_003248563.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371336|gb|ACX74081.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 463

 Score =  136 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 127/430 (29%), Positives = 220/430 (51%), Gaps = 26/430 (6%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L  +    + + G+ +  P+Q K+IP +L   D+   ++TG+GKT ++ LP+L ++ +  
Sbjct: 37  LPEEQKAILREHGWTELMPVQRKSIPYMLAARDMLVQSKTGSGKTGAYALPLLQVIVRDH 96

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
                P+ LIL PTREL  QV + FEK  K   +    + GG+ +E Q K L  G  V++
Sbjct: 97  ---PYPQALILVPTRELCIQVQEEFEKLSKGTGIKSVAIFGGVSYEPQIKALRSGVHVIV 153

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR++DH  RG + + +I  LV+DEAD ML MGF P +Q I   +P      ++SAT+
Sbjct: 154 ATPGRLMDHIQRGNVDLLSIRDLVLDEADEMLSMGFYPDMQKIRKYLPKAISCTMYSATI 213

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
              ++ ++  F +        +              T     K    ++  +      ++
Sbjct: 214 PQTVKSLAREFQRPGADFLSLSYDKVIANNLEHRYYTCDVMEKDSMTIK--VLEYYNPES 271

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            +IFCN K++V  L   L   GF V A+ G++ Q  R K L+ F++  +++++ +D+AAR
Sbjct: 272 CMIFCNYKRDVSYLEQVLSGYGFEVGALSGDVAQSLREKTLNAFRDKKLKILICTDVAAR 331

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           G+D+  V HV  +D P   E Y+HR GRT RAGR G   +L+    ++ ID  +  ++  
Sbjct: 332 GIDVDHVTHVIVYDHPADHEVYVHRSGRTARAGRSGLCISLITP--VEEIDLRQTAVDFG 389

Query: 368 VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEK 427
           ++++  D      PL   +IA+    R    +       +  +K++  QK+      +E+
Sbjct: 390 INFIKMD------PLTNEEIAKKVSERTKVRL-------EEVRKHFGGQKA------TER 430

Query: 428 ISKLQQDIQE 437
           IS++   ++E
Sbjct: 431 ISRMLPLVKE 440


>gi|268679387|ref|YP_003303818.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617418|gb|ACZ11783.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 463

 Score =  136 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 125/353 (35%), Positives = 190/353 (53%), Gaps = 6/353 (1%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR 71
           ++  +   GY   TPIQ  ++P +L+  D+   A+TG+GKT +F LP+L  L   + R++
Sbjct: 17  MLETLTRLGYHNMTPIQEASLPFILEGRDIVAKAKTGSGKTLAFGLPLLLALHVKQMRIQ 76

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-ERGADVLICTP 130
                +L PTRELA QV+    K     +    + + G           E GA +++ TP
Sbjct: 77  SV---VLCPTRELAEQVSAELRKLASFTHNIKIVTLCGGARFVPQCISLEHGAHIVVGTP 133

Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190
           GRIL H     +   +I+ LV+DEADRMLDMGF   I+ I + +P  RQTLLFSAT   E
Sbjct: 134 GRILQHLQEKTINFEHIKTLVLDEADRMLDMGFYEDIEKIIAKMPKERQTLLFSATFPRE 193

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGII 250
           ++++ +   +   +I V     +A            +  K+     +     +  K+ II
Sbjct: 194 IEQMCQEVQKEALQISVEEEQKSAPLSISQIALKVEEREKEAT--LEAFLLNEMPKSVII 251

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           FC  K  V  L  SL + GF    +HG+++Q +R + L  F  G+ Q++VA+DLAARGLD
Sbjct: 252 FCKTKVAVSALQSSLYEAGFDALCLHGDLEQIARDENLLLFANGSAQILVATDLAARGLD 311

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           I DV  V N+++P+  E Y HRIGRTGR G+ GKA + V   +   +  +E++
Sbjct: 312 IKDVEMVINYELPHTIEIYTHRIGRTGRMGKEGKAISFVTPSEESFLHELERV 364


>gi|157135580|ref|XP_001656674.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|157135584|ref|XP_001656676.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|94468792|gb|ABF18245.1| initiation factor EIF-4A [Aedes aegypti]
 gi|108870173|gb|EAT34398.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108870175|gb|EAT34400.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 404

 Score =  136 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 32  NFDDMHLKEQLLRGIYAYGFEKPSAIQQRAIMPCIKGHDVIAQAQSGTGKTATFSIAILQ 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++   A     + LIL PTRELA Q+       G          IGG       +KLE 
Sbjct: 92  QIDTSIAE---CQALILAPTRELATQIQKVVIALGDYLGAQCHACIGGTNVRDDMRKLEM 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D  +R  L  ++I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 149 GCHIVVGTPGRVHDMISRNVLRPSHIKLFVLDEADEMLSRGFKDQIQDVFRMLPNDVQVI 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+ +VS +F+++P +I V     T E I+  ++    +  K        L  
Sbjct: 209 LLSATMPAEVLEVSTHFMRDPIKILVKKEELTLEGIKQFYIDVKQENWKL--GTLIDLYD 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +  Q F+V ++HG++DQR R  I+  F+ G+ ++++ 
Sbjct: 267 TLSITQAVIFCNTRRKVDQLTADMTSQSFTVSSMHGDMDQRDRDLIMKQFRTGSSRVLIT 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V   D + +  IE
Sbjct: 327 TDLLARGIDVQQVSLVINYDLPTLRENYIHRIGRGGRFGRKGVAINFVTDVDRRVLQDIE 386

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    K++ +  +L+ +
Sbjct: 387 KHYNTKIEEMPANLADM 403


>gi|289620034|emb|CBI53478.1| unnamed protein product [Sordaria macrospora]
          Length = 615

 Score =  136 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 116/433 (26%), Positives = 192/433 (44%), Gaps = 19/433 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L + P +V ++ +    +PT IQ   IP +L+  D  G ++TG+GKT +F +P+L 
Sbjct: 185 TFDALNVRPWLVQSLANMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQ 244

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                 + +     LIL PTRELA Q+ +      + + L   L+ GG     Q   L  
Sbjct: 245 QWAANPSAIF---GLILTPTRELALQIMEQVIALSQPHVLKAVLITGGSDMRKQAIDLAN 301

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILV--------IDEADRMLDMGFIPYIQNITSL 173
              ++I TPGR+ DH              V                    +P ++   S+
Sbjct: 302 RPHLVIATPGRLADHIRTSGEDTICGLRRVKFIVLDEADRLLANSGKGSMLPDVEECFSV 361

Query: 174 VPFTRQTLL--FSATMTDELQ----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           +P   +     F+ATMT E++    +            EV+T                  
Sbjct: 362 LPPPSERQTLLFTATMTPEVKALSERPPIPGRAPVFVCEVDTQRLAIPATLRQMHLQVPV 421

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             ++  L   LL  Q+  K+ IIFCN+      L H L      V ++H  + Q  R+  
Sbjct: 422 THREHYLHMFLLTPQNVDKSVIIFCNRTSTADFLHHLLRLLDHRVTSLHSKLPQSQRIDN 481

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L  F+    +++VA+D+AARGLDIP+V  V N+D+P   ++YIHR+GRT RAGR G A T
Sbjct: 482 LGRFRASAARILVATDVAARGLDIPEVKIVVNYDIPRDPDDYIHRVGRTARAGRKGDAVT 541

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPL--EKIDIAQHNHARKNNPIPQKSTG 405
            V + D+  + AIE+ + ++++    +  +L   +  E + +           I ++   
Sbjct: 542 FVGQRDVDLVLAIEQRVGRQMEAWTEEGVNLETRVIREALKVVGEKKREALLEIEEQKEV 601

Query: 406 FDRRKKNYSSQKS 418
             +RK+     ++
Sbjct: 602 GGKRKRGKEKLRA 614


>gi|38233323|ref|NP_939090.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38199582|emb|CAE49235.1| Putative ATP-dependent RNA helicase [Corynebacterium diphtheriae]
          Length = 436

 Score =  136 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 137/431 (31%), Positives = 221/431 (51%), Gaps = 6/431 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG++ ++  A+   G  +   IQ  T+P+ L   D+ G A+TG GKT  F +P++ 
Sbjct: 9   TFVELGVAREITDALATVGVKRTFAIQELTLPIALDGRDLIGQARTGMGKTYGFGVPLID 68

Query: 62  ILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +            PR L++ PTRELA QV D+ +   +N  +TVA + GG P+E Q  +
Sbjct: 69  RVFDAADVAELDGTPRALVVVPTRELAHQVGDDLKLLSRNIPITVATIYGGRPYEEQIAQ 128

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G DV++ TPGR++D + RG L ++++ +LV+DEAD MLD+GF P I+ + + +    
Sbjct: 129 LESGVDVVVGTPGRLIDLYQRGNLALDHVAVLVLDEADEMLDLGFFPDIEKLLAALTHPH 188

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATM   +  ++  F+           +  A+T        +  +    + +   
Sbjct: 189 QTMLFSATMPGAVVTLARTFMH-HPVHIRAEDTGAAQTHASTTQVIFQAHRMDKSAVTAR 247

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +   +     IIF   K+    L   L ++GF V  +HG++ Q +R   L  F+ G   +
Sbjct: 248 ILQAEGRGKTIIFARTKRTAAELADDLAQRGFRVAGVHGDLGQSAREASLDAFRTGKAHI 307

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI DV HV N+  P+    Y+HRIGRTGRAG  G A TLV  +++    
Sbjct: 308 LVATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGTAVTLVGYDELPKWQ 367

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            I   +           S+     + ++I   + A  +    + + G  +  K+ S +  
Sbjct: 368 LINDELNLGQPEPPQWFSTSPELFQALNIP--DTATDSVGRSRTAVGSRKFNKSRSPRSQ 425

Query: 419 HIPLKESEKIS 429
             P  +S K S
Sbjct: 426 RRPSNKSGKRS 436


>gi|315126555|ref|YP_004068558.1| ATP-dependent RNA helicase, DEAD box [Pseudoalteromonas sp. SM9913]
 gi|315015069|gb|ADT68407.1| ATP-dependent RNA helicase, DEAD box [Pseudoalteromonas sp. SM9913]
          Length = 440

 Score =  136 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 119/371 (32%), Positives = 190/371 (51%), Gaps = 1/371 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLG+  ++   +   G  +PT IQ   +P  L  HD+   ++TG+GKT +F+LP +
Sbjct: 1   MHFTDLGIDTRLETQLAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAV 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + K +A   R PR LI+ PTRELA QV           N+    ++GG  F  Q K L
Sbjct: 61  QRVMKQKALSKRDPRVLIVAPTRELATQVFTQLRLLIAGTNIKAVKILGGENFNDQIKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                 ++ TPGR+ DH  +  L ++ +E+L+ DEADR+LD+GF   ++ I  L     +
Sbjct: 121 RNDPHFVVATPGRLADHLKQRSLQLSGLELLIFDEADRILDLGFTDQLKLINELADHRLR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  Q  + +     K  ++   ++  +  +       A +      L +  
Sbjct: 181 QTLLFSATLDHAQVDALSRNLLKKPKQIMLSAANEQHSDIKQTLYLADHLDHKEALLEHF 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +QD +   IIF   + +   L  SL  +GF   A+ G++ Q  R+ I+  F     +++
Sbjct: 241 LNQDNVGQCIIFTATRADTSRLSESLNSKGFKSVALAGDLTQSKRLDIMDAFSRENFKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+A+RGLD+  V HV NFD+P  AE Y+HRIGRTGRAG  G A +LV  +D     A
Sbjct: 301 ITTDVASRGLDLLSVTHVINFDLPKHAEEYVHRIGRTGRAGFKGNALSLVGPKDWASYLA 360

Query: 360 IEKLIEKKVDW 370
           I+  +  ++ +
Sbjct: 361 IKSFLNDELSF 371


>gi|77408189|ref|ZP_00784934.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae COH1]
 gi|77173204|gb|EAO76328.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae COH1]
          Length = 447

 Score =  136 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 118/366 (32%), Positives = 178/366 (48%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D    P +  A+ +  +V PT +Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDFNFKPYIQRALDELKFVAPTDVQAKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNK 117
             L++    V++    I  P+RELA Q+    ++  ++    + ++             K
Sbjct: 61  EKLDESSDDVQVV---ITAPSRELATQIYQATKQIAEHSEQEIRVVNYVGGTDKLRQIEK 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L+++     V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LKVSQPHIVIGTPGRIYDLVKSGDLVIHKAHTFVVDEADMTLDMGFLDTVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEKIKTATVIADTI---DNWLLSTKGRDKNAQIL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L         +IF N K+    L   L   G  V  IHG I  R R +I++  K    +
Sbjct: 235 ELSKLMQPYLAMIFVNTKERADELHSYLSSNGLKVAKIHGGIAPRERKRIMNQVKNLEFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EKL
Sbjct: 355 RELEKL 360


>gi|301025571|ref|ZP_07189094.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
 gi|300395891|gb|EFJ79429.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
          Length = 457

 Score =  136 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 208/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLDELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGLQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W    ++S   PLE
Sbjct: 357 SDMLQIKLNWQTPPVNSSIVPLE 379


>gi|254578822|ref|XP_002495397.1| ZYRO0B10318p [Zygosaccharomyces rouxii]
 gi|238938287|emb|CAR26464.1| ZYRO0B10318p [Zygosaccharomyces rouxii]
          Length = 750

 Score =  136 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 142/463 (30%), Positives = 233/463 (50%), Gaps = 41/463 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  L LS  V+ A+ D GY  P+PIQ  TIP+ L   D+   A TG+GKTA+F++P++ 
Sbjct: 238 NFNSLSLSRPVLKALGDLGYATPSPIQGATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 297

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L    A+V   R ++L PTRELA QVAD  +K GK  N  T  + +GG+    Q + L+
Sbjct: 298 RLIYKPAKVASTRVIVLAPTRELAIQVADVGKKLGKYVNGLTFGIAVGGLNLRQQEQILK 357

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNI-EILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D++I TPGR +DH         +  E+LVIDEADRML+ GF   I  I  L+P  RQ
Sbjct: 358 TRPDIVIATPGRFIDHIRNSSSFNVDSVEVLVIDEADRMLEEGFQDEINEIMHLLPSKRQ 417

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE--TIEHCFVATYAQYSKKCALLQQ 237
           T+LFSATM  +++++    L+ P R+  + P         E   +               
Sbjct: 418 TMLFSATMNSKIKQLVSLSLKRPVRVMTDPPQQAVSKLQQEFVRIRKRDHLKPSTLFYLI 477

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                   K  ++F ++K+ V  L   L   G +V  +HG+++Q  R++ ++ FK   + 
Sbjct: 478 KKLDGAAQKRMVVFVSKKEMVHRLRIILGLLGMAVAELHGSLNQEQRLQSINKFKSLEVP 537

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIK 355
           +++ +DLA+RGLDIP +  V N+D+P   E Y+HR+GRT RAGR G++ + V    ++  
Sbjct: 538 VLICTDLASRGLDIPKIEVVINYDMPKSFEIYLHRVGRTARAGREGRSVSFVGETSQERS 597

Query: 356 HIDAIEKLIEK---------------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
            + +  K  ++               +++ +N  + S++  ++ I               
Sbjct: 598 IVKSAIKSAQESGEKNLPVGRNVDWNQIEEINKTVESMSDTVKDI--------------- 642

Query: 401 QKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSL 443
                 D  K+     ++ + LK+ E + K +Q+I+     + 
Sbjct: 643 -----LDEEKQEKEILQAEMQLKKGENLIKHKQEIESRPKRTW 680


>gi|198430288|ref|XP_002129439.1| PREDICTED: similar to eukaryotic translation initiation factor 4A
           [Ciona intestinalis]
          Length = 430

 Score =  136 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 123/378 (32%), Positives = 201/378 (53%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F + +L 
Sbjct: 57  SFDDMCLKEELLRGIYAYGFEKPSAIQQRAIQPCIEGKDVIAQAQSGTGKTATFAISVLQ 116

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE- 120
            ++    + +    L++ PTRELA Q+       G   ++     IGG     + +  + 
Sbjct: 117 KIDASLKQTQA---LVIAPTRELAQQIQKVVMALGDYESIHCHACIGGTSVRTEIQVFQT 173

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L  + +++ V+DEAD ML  GF   I  I   +P T Q 
Sbjct: 174 NPPQIVVGTPGRVFDMINRKYLDTSKVKMFVLDEADEMLSRGFKDQIYEIFRTMPATIQV 233

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++  V+  F+ +P RI V     T E I+  +V    +  K   L      
Sbjct: 234 ILLSATMPTDVLDVTTCFMPDPIRILVKKEELTLEGIQQFYVFVEKEEWKLDTLCDL--Y 291

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   L+++ F+V A+HG++DQ  R  I+  F+ G+ ++++
Sbjct: 292 ETLTITQAVIFSNTRRKVDWLTEELQRRDFTVSALHGDMDQGDREVIMREFRSGSSRVLI 351

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V  +D + +  I
Sbjct: 352 TTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTDDDKRTLKDI 411

Query: 361 EKLIEKKVDWLNGDLSSL 378
           EK    K++ +  +++ L
Sbjct: 412 EKFYNTKIEEMPMNVADL 429


>gi|301117800|ref|XP_002906628.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262107977|gb|EEY66029.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 455

 Score =  136 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 88/375 (23%), Positives = 157/375 (41%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+ + AV+D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 76  FRDFILKPECLRAVVDCGFEHPSEVQHECIPQAVLGMDIICQAKSGMGKTAVFVLATLHQ 135

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    ++ +             A   + F KY  +    V      I    +  K    
Sbjct: 136 IEPVDGQISVVVMCHTRELAFQIAHEYERFSKYLVDVKTGVFYGGVPISQNREALKNNPP 195

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             ++      +     +   L      ++ +    +  +     IQ I    P  +Q ++
Sbjct: 196 HILVGTPGRILGLLREKTLKLDKVKHFVMDECDKMLEAIDMRRDIQEIFKATPHDKQVMM 255

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F Q+P  I V+  +         +     +  K        L   
Sbjct: 256 FSATLSKEIRPVCRKFCQDPMEIYVDDETKLTLHGLQQYYIKLEESEKNR--KLNDLLDA 313

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF ++K     L   L +  F    I  ++ Q  R+K   +FK+   +++V +
Sbjct: 314 LEFNQVVIFVSKKNRGRELNRLLNECNFPSICITADLSQEERIKRYKSFKDFQKRILVTT 373

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDAIE 361
           DL  RG+DI  V  V N+D PN ++ Y+HR+GR GR G  G + + + ++ED + +  ++
Sbjct: 374 DLFGRGMDIERVNIVVNYDFPNDSDQYLHRVGRAGRFGTKGLSISFISSEEDTEMLAKVQ 433

Query: 362 KLIEKKVDWLNGDLS 376
              E  +  L   + 
Sbjct: 434 SRFEVNIPELPDQID 448


>gi|114613147|ref|XP_001144725.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 isoform 3 [Pan
           troglodytes]
          Length = 531

 Score =  136 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 118/486 (24%), Positives = 204/486 (41%), Gaps = 43/486 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL P+++ AV D G+ +PT IQ K IPL L+  D+   A+TG+GKTA++ +PML +
Sbjct: 9   FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L   +A           P  E A +       Y         +         +   +E+ 
Sbjct: 69  LLHRKATG---------PVVEQAVRGLVLLATYCARDVRVANVSAAEDSVSQRAVLMEKP 119

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +         L +++E+LV+DEAD +   GF   ++++   +P   Q  L
Sbjct: 120 DVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFL 179

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT  +++Q + E  L NP  +++             F         K  LL  LL+  
Sbjct: 180 MSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVICETEEDKFLLLYALLKLS 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F N  +    L   LE+     C ++G +  RSR  I+S F +G    ++A+
Sbjct: 240 LIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIAT 299

Query: 303 DLA---------------------------ARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335
           D                             ARG+D   V  V NFD+P   E YIHR GR
Sbjct: 300 DAEVLGAPVKGKRRGRGPKGDKASDLEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGR 359

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           T RA   G   T V   +  H+  IE+L+    +     L      +E+I+  ++     
Sbjct: 360 TARANNPGIVLTFVLPTEQFHLGKIEELL--SGENRGPILLPYQFRMEEIEGFRYRCRDA 417

Query: 396 NNPIPQKSTGFDR----RKKNYSSQKSHIPLKESEK-ISKLQQDIQENDADSLGFRGNMP 450
              + +++    R    +++   S+K     +++ + +  L+ D+  + A      G++P
Sbjct: 418 MRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVP 477

Query: 451 AFMLPK 456
            +++P 
Sbjct: 478 DYLVPP 483


>gi|332113313|gb|AEE02033.1| X-linked DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Sus scrofa]
          Length = 661

 Score =  136 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 136/428 (31%), Positives = 215/428 (50%), Gaps = 29/428 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 241 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 300

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 301 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 360

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 361 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 420

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 421 WVEESDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH-NHARKNNPIPQ 401
           G A +   + +      +       +D L      +   LE +    H   + +     +
Sbjct: 539 GLATSFFNERNANITKDL-------LDLLVEAKQEVPSWLENMAYEHHYKGSSRGRSKSR 591

Query: 402 KSTGFDRR 409
            S GF  R
Sbjct: 592 FSGGFGAR 599


>gi|306836062|ref|ZP_07469052.1| ATP-dependent RNA helicase RhlE [Corynebacterium accolens ATCC
           49726]
 gi|304568089|gb|EFM43664.1| ATP-dependent RNA helicase RhlE [Corynebacterium accolens ATCC
           49726]
          Length = 435

 Score =  136 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 132/407 (32%), Positives = 204/407 (50%), Gaps = 8/407 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            FA+LGL  +VV  + D G  +  PIQ   IP VL   DV G   TG+GKT +F LP + 
Sbjct: 3   TFAELGLPQRVVHVLNDQGITEAFPIQAAAIPDVLAGKDVLGRGPTGSGKTFTFGLPTLA 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +   G +    PR ++L PTRELA Q+    ++      L V  ++GG+      + L 
Sbjct: 63  RLAGSGASTPGHPRAVVLAPTRELATQIQQRLDEPAAALGLRVLAVVGGVNINHHIRSLA 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R  D+L+ TPGR  D   +GKL  + ++I  +DEAD+M DMGF+P ++ + +  P T Q 
Sbjct: 123 RPVDLLVATPGRAQDLIAQGKLSFDKVQITTLDEADQMADMGFLPQVRKLLNYTPPTGQR 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++ K+ E FL +P        ++  E++ H       + ++   +++    
Sbjct: 183 LLFSATLDGDVNKLVEQFLHDPVVHSTAPVTAAVESMSHHLFFVGDRPARNEVVMR---- 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K  V      L + G +   +HG+  Q +R + +S F +G+I ++V
Sbjct: 239 IAARAGKTIMFMRTKHGVDRQVKKLRRVGINAYPLHGDKGQGARTRAISGFADGSIPVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI DV  V + D P   + Y+HR GRT R G  G   TLV  E    + A+
Sbjct: 299 ATDIAARGIDIADVSLVVHVDPPAEHKAYLHRAGRTARGGATGTVVTLVTDEQRSEVAAL 358

Query: 361 EKLIE---KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
            K       + D  + D  +  P L  +  A+  H     P  Q  +
Sbjct: 359 IKKAGVNATEYDISHRDNPAGAPELRTVTGARKPHGPALPPPGQDGS 405


>gi|297833736|ref|XP_002884750.1| hypothetical protein ARALYDRAFT_478294 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330590|gb|EFH61009.1| hypothetical protein ARALYDRAFT_478294 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 539

 Score =  136 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 111/412 (26%), Positives = 195/412 (47%), Gaps = 15/412 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            FA+L    G    ++  + + G+ +PTPIQ + IP++L   +    A TG+GKT +F+ 
Sbjct: 136 SFAELSSRYGCEGYILGNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTVAFIC 195

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           PML  L+         R +IL P RELAAQ A   +K  K  N  + L+    P      
Sbjct: 196 PMLIKLKHPSTDG--IRAVILSPARELAAQTAREGKKLIKGSNFHIRLMTK--PLVKTAD 251

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             +   DVLI TP R+       K+ ++ +E LV+DE+D++ +   +  I  +       
Sbjct: 252 FSKLRCDVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNP 311

Query: 178 RQTLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
                 FSAT+ D +++++ + + +  R+ +   ++ +ET++   V    +  K  A   
Sbjct: 312 SIIRSLFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGTEEGKLLA--L 369

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +   ++      +IF   K+    L   L+ +      IH ++    R   +  F+ G  
Sbjct: 370 RQSFAESLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEK 429

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+ ARG+D   +  V N+D P+ A  YIHRIGR+GRAGR G+A T   ++D+  
Sbjct: 430 WVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPF 489

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           +  I  ++      +   + SL    +K    +H   R +     K+   D+
Sbjct: 490 LRNIANMMMSSGCEVPSWIMSL----KKKKWRKHRPRRDSISTQPKADKNDK 537


>gi|195112586|ref|XP_002000853.1| GI10456 [Drosophila mojavensis]
 gi|193917447|gb|EDW16314.1| GI10456 [Drosophila mojavensis]
          Length = 748

 Score =  136 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 113/392 (28%), Positives = 199/392 (50%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L   +S   + A+ + G+ + T IQ K++  +L+  D+ G AQTG+GKT +F++P 
Sbjct: 253 TFASLKGAVSEATLRAIEEMGFSEMTEIQAKSLTPLLKGRDLVGAAQTGSGKTLAFLIPA 312

Query: 60  LTILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K R   R     +I+ PTREL+ Q     ++   +++ T  L++GG   + +++K
Sbjct: 313 VELINKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEK 372

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G ++L+ TPGR +    N    L  N++ L+IDE DR+L++GF   ++ I +L+P  
Sbjct: 373 LSKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKR 432

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T+ +  +S+  L+          +    T+E          S+K  L+  
Sbjct: 433 RQTMLFSATQTERIDALSKLALKKEPIYVGVHDNQETATVEGLEQGYIVCPSEKRLLVLF 492

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V             V +IHG   Q  R      F      
Sbjct: 493 TFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESG 552

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
           +++ +D+AARGLDIP V  +  +D P+    YIHR+GRT R  G  G A  ++  E++  
Sbjct: 553 ILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLMLRPEELGF 612

Query: 357 IDAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
           +  + K  +  ++        ++ +   LEK+
Sbjct: 613 LRYL-KAAKVPLNEFEFSWQKIADIQLQLEKL 643


>gi|148359632|ref|YP_001250839.1| ATP dependent RNA helicase DbpA [Legionella pneumophila str. Corby]
 gi|148281405|gb|ABQ55493.1| ATP dependent RNA helicase DbpA [Legionella pneumophila str. Corby]
          Length = 468

 Score =  136 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 136/375 (36%), Positives = 214/375 (57%), Gaps = 7/375 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L  +++ ++  + Y   TPIQ++++P++L+  D+   A+TG+GKTA+F L +L
Sbjct: 11  LSFSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDIIAQAKTGSGKTAAFALCLL 70

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL-IGGIPFEAQNKKL 119
             L+     V+    L+L PTRELA QV+    +          +   GGIP + Q   L
Sbjct: 71  NNLKISFFAVQ---ALVLCPTRELAEQVSQAIRRLACLMPNVKIINLSGGIPMQPQLGSL 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA +++ TPGRIL H     L ++ ++ LV+DEADRMLDMGF   I+NI S+ P  RQ
Sbjct: 128 RHGAHIIVGTPGRILKHLKNASLDLSQVKALVLDEADRMLDMGFFDDIKNIISICPKQRQ 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +E++++S+ F+++PK + V TP    +  +H +  +          L + L
Sbjct: 188 TLLFSATYPEEIKRLSKQFMKDPKEVHVVTPPEEIDIEQHFYEVSRQAQK---FPLLKSL 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + +IFCN K+  V +   L  +GFS  A++G+++Q  R   +  F   +  ++
Sbjct: 245 LLHYRPVSVLIFCNTKQQTVEVTDQLINEGFSAIALNGDMEQIERDLAVLRFANQSCSIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++  V NFD+    + +IHRIGRTGRAG  G A ++V   D + I A
Sbjct: 305 VATDVAARGLDIKELSAVINFDLAFDHDIHIHRIGRTGRAGSKGIALSIVTPADAQRICA 364

Query: 360 IEKLIEKKVDWLNGD 374
           IE      + W N +
Sbjct: 365 IEDNYPHPIHWGNIN 379


>gi|17507881|ref|NP_491681.1| Germ-Line Helicase family member (glh-3) [Caenorhabditis elegans]
 gi|10720000|sp|O01836|GLH3_CAEEL RecName: Full=ATP-dependent RNA helicase glh-3; AltName:
           Full=Germline helicase 3
 gi|2088766|gb|AAB57719.1| Germ-line helicase protein 3 [Caenorhabditis elegans]
 gi|3386542|gb|AAC28388.1| germline RNA helicase-3 [Caenorhabditis elegans]
          Length = 720

 Score =  136 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 124/421 (29%), Positives = 194/421 (46%), Gaps = 29/421 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60
            F+D  +   +   V  AGY + TPIQ  T+PLV    D+   AQTG+GKTA+F+LP++ 
Sbjct: 299 SFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMS 358

Query: 61  -----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  L  G      PR +IL PTRELA Q+ +   K+     + +  + GGI     
Sbjct: 359 RLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFSYQSVMEIKPVYGGINVGYN 418

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD-MGFIPYIQNITSLV 174
             ++ +G  +++ T GR+      G + ++    LV+DEADRM+D MGF P I+ I +  
Sbjct: 419 KSQIMKGCTIIVGTIGRVKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQIINYK 478

Query: 175 PFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQT++FSAT    +Q+ +   L+    +        A            + SK
Sbjct: 479 NMPKNDKRQTMMFSATFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQEFELCDRTSK 538

Query: 231 ----------KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
                               S   +K  I+F  Q+K    L   +         IHG  +
Sbjct: 539 VDKLLKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAITIHGARE 598

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           Q+ R   L  F+ G   +++A+ +  RGLDI  V HV N+D+PN  ++YIHRIGRTGR G
Sbjct: 599 QKERSAALKLFRSGAKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRVG 658

Query: 341 RHGKAFTLVAKED--------IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
             G+A + ++  D        ++ +   E+++   +    G  S+ N   + ID  +   
Sbjct: 659 NSGRATSFISLADDVQILPQLVRTLADAEQVVPSWMKEAAGGTSNPNKFEKSIDTEEPEE 718

Query: 393 A 393
           A
Sbjct: 719 A 719


>gi|66807079|ref|XP_637262.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
 gi|74996736|sp|Q54KG1|DDX41_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx41; AltName:
           Full=DEAD box protein 41
 gi|60465669|gb|EAL63748.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
          Length = 671

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 133/403 (33%), Positives = 206/403 (51%), Gaps = 24/403 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ +   V+  +L+ G  KP+PIQ++ +P++L   D+ GIA TG+GKT  F LPM+ 
Sbjct: 223 TFKEMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPMVL 282

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVA-------DNFEKYGKNYNLTVALLIGG 109
              +   ++ +     P  LIL P+RELA Q         +   K G +  L   L IGG
Sbjct: 283 FALEEECKLPIIQGEGPFGLILCPSRELARQTYDLVNSFTNALHKNGGHPQLRTLLAIGG 342

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           I    Q    ++G  ++I TPGR+LD  N+ K+     + L +DEADR++D+GF   I++
Sbjct: 343 IDLREQEHIFKKGVHMIIATPGRLLDLLNKKKINFKLCKYLGLDEADRLIDLGFEDDIRS 402

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           +       RQTLLFSATM  ++Q+    F ++   + V      A               
Sbjct: 403 VLDNFTNQRQTLLFSATMPKKIQE----FARSALVLPVEVNVGRAGAANLNVTQEVEFVK 458

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            +  ++  L   Q T    +IFC  KK+V ++   L  +     +IHG+  Q  R   + 
Sbjct: 459 PEAKIVYLLECLQKTPPPVLIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQDERESAIK 518

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F+EG   ++VA+D+A++GLD P++ HV NFD+P   ENYIHRIGRTGR G  G A T +
Sbjct: 519 AFREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTFI 578

Query: 350 AKEDIK------HIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
            K + +          IE   ++KV     ++   N  L+K+ 
Sbjct: 579 NKNNTESLLLDLKYLLIE--AKQKVPPALLEIPDDNQYLQKLQ 619


>gi|168462889|ref|ZP_02696820.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195634348|gb|EDX52700.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 457

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 139/402 (34%), Positives = 222/402 (55%), Gaps = 10/402 (2%)

Query: 2   DFADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F+ L  L    +  + + GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L
Sbjct: 3   TFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF AQ   L
Sbjct: 63  HRIDVTLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +++ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQ
Sbjct: 120 QHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  + +  +S    Q P RIE++T     + +       +   + +   L Q L
Sbjct: 180 TLLFSATWPEAIAAISGRVQQQPIRIEIDTV----DALPAIEQQFFETSAHEKISLLQTL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            SQ    + ++FCN KK+   +C +L   G S  A+HG+++QR R + L  F  G+ +++
Sbjct: 236 LSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARIL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +  A E+ +  + 
Sbjct: 296 VATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANI 355

Query: 360 IEKLIEKKVDWLNGDL-SSLNPPLEKIDIAQHNHARKNNPIP 400
           + ++++ K++WLN     SL P   ++     +  +K    P
Sbjct: 356 LSEMLQLKLNWLNAPARQSLLPLAAEMATLCIDGGKKAKMRP 397


>gi|118351203|ref|XP_001008880.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89290647|gb|EAR88635.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 643

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 140/436 (32%), Positives = 226/436 (51%), Gaps = 15/436 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + DLGL   ++ AV +  Y  PT IQ   IP  LQ  D+   + TG+GKTA+F++P+L 
Sbjct: 191 TWQDLGLIKPLLKAVEEMQYEFPTNIQSLAIPAALQGKDLLASSLTGSGKTAAFLIPILQ 250

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +        + LI+ PTRELA Q+ + F K  K   L   L+IG    + Q  +L  
Sbjct: 251 KFYRSPF-TNYSKALIVTPTRELAFQIYEVFTKLNKYTKLRACLVIGQSAMQKQEAELRG 309

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             +V+I TPGR++DH  N   + ++N+E+L+ DEAD++LD+GF    QNI       RQT
Sbjct: 310 NPEVIIATPGRLIDHLQNSRSIDLDNLEVLIFDEADKLLDLGFEAAAQNIVENCNRERQT 369

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+T E+ K+ +  L+ P RI+ N    T +           Q+          + 
Sbjct: 370 LLFSATLTSEVNKLIDIALRKPIRIQANPDGQTNDK--LIQKMLRIQHEDFREAALLAIA 427

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   +  IIF   K+    +       G  VC +HG++ Q  R++  S+FKEG  Q ++
Sbjct: 428 AKYYKERTIIFFKTKRQTHRMAIIFGLFGLKVCELHGDLTQNQRIQAFSDFKEGKYQYLM 487

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLA+RGLDI  V  V NF++P+    YIHR+GRT RAG  G + T+    ++K +  +
Sbjct: 488 ATDLASRGLDIQGVKAVINFELPSEVTRYIHRVGRTARAGNEGISLTIGLDAELKTLKKM 547

Query: 361 EKLIEKK-VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
            K  + K ++ ++  + +L    EKI   +    +            +  +     +K+ 
Sbjct: 548 LKENKDKMMEKVSLSVETLQKYKEKIQNVEREVVKV----------LEEEQAERQLRKAE 597

Query: 420 IPLKESEKISKLQQDI 435
           + L+++E + K + +I
Sbjct: 598 MELQKAENMIKHKDEI 613


>gi|241047288|ref|XP_002407236.1| translation initiation factor 4F, helicase subunit, putative
           [Ixodes scapularis]
 gi|215492155|gb|EEC01796.1| translation initiation factor 4F, helicase subunit, putative
           [Ixodes scapularis]
          Length = 422

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 203/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F + +L 
Sbjct: 50  NFDDMSLREELLRGIYAYGFEKPSAIQQRAIIPCIKGMDVIAQAQSGTGKTATFSIAILQ 109

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G   N      IGG       +KLE+
Sbjct: 110 QIDMALKE---CQALILAPTRELAQQIQKVVIALGDYMNAQCHACIGGTNVREDIRKLEK 166

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G   ++ TPGR+ D  +R  L  NNI I V+DEAD ML  GF   I ++   +    Q +
Sbjct: 167 GVHTVVGTPGRVFDMISRKALRTNNIRIFVLDEADEMLSRGFKDQIYDVFRTLNSNIQVI 226

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++  V++ F++NP RI V     T E I+  +VA   +  K   L       
Sbjct: 227 LLSATMPSDVLDVTKCFMRNPIRILVKKEELTLEGIKQFYVAVDREEWKLDTLCDL--YE 284

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   + ++ F+V A+HG++ Q+ R  I+  F+ G+ ++++ 
Sbjct: 285 TLTITQAVIFCNTRRKVDWLTEKMHERDFTVSALHGDMGQKERDVIMREFRSGSSRVLIT 344

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V NFD+P   ENYIHRIGR GR GR G A   V +ED + +  IE
Sbjct: 345 TDLLARGIDVQQVSLVINFDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRTLKDIE 404

Query: 362 KLIEKKVDWLNGDLSSL 378
                +++ +  +++ L
Sbjct: 405 GFYNTEIEEMPMNVADL 421


>gi|112419200|gb|AAI22412.1| Ddx10 protein [Danio rerio]
          Length = 439

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 117/369 (31%), Positives = 179/369 (48%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+D  LS K +  +L+A Y +PT IQ +TI   LQ  DV G A+TG+GKT +F++P+L
Sbjct: 70  VKFSDFPLSKKTLKGLLEAQYRQPTEIQRQTIGFALQGRDVLGAAKTGSGKTLAFLIPVL 129

Query: 61  TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L + +         LI+ PTRELA Q  +   K GKN+  +  L+IGG   + +++K+
Sbjct: 130 ECLYREQWTAMDGLGALIISPTRELAYQTFEVLRKVGKNHEFSAGLVIGGKDLKDESEKI 189

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R   ++      +           +++ +LV+DEADR+LDMGF   +  I   +P +RQ
Sbjct: 190 HRTNIIICTPGRLLQHMDETAAFHASDLHMLVLDEADRILDMGFADTLNAIVENLPKSRQ 249

Query: 180 TLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           TLLFSAT T  ++     +               +              + K   L   L
Sbjct: 250 TLLFSATQTRSVKDLARLSLKDPEYVWVHEQAKFSTPATLEQNYVVCELHQKVNMLYSFL 309

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                        C ++   +       + G SV A+HG   Q  R+++ ++F   T  +
Sbjct: 310 RSHLQKKIIVFFACCKEVQYLFRIFCRLRPGISVLALHGKQQQMKRVEVYNDFVRKTSAV 369

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+AARGLD P V  V  FD P  A  YIHR+GRT R    G A  ++   + K + 
Sbjct: 370 LFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRVGRTARYKEGGGALLVLLPSEEKGM- 428

Query: 359 AIEKLIEKK 367
            I +L EKK
Sbjct: 429 -ISQLQEKK 436


>gi|56461231|ref|YP_156512.1| ATP-dependent RNA helicase SrmB [Idiomarina loihiensis L2TR]
 gi|56180241|gb|AAV82963.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 409

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 120/371 (32%), Positives = 193/371 (52%), Gaps = 2/371 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           D+ +  L  +++  + DA   KP  +Q ++IP  L   D+   A TGTGKT +F+LP L 
Sbjct: 4   DWEEFDLDDRLIAVLRDAELNKPAKVQQQSIPAALDGRDLLISAPTGTGKTLAFLLPALQ 63

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L     +   P  + +L PTRELA Q+ +  +++     LT  ++ GGI + +Q   LE
Sbjct: 64  HLLDFPRQQPGPARILVLAPTRELAEQIHEQAKQFEAKTGLTSVVVTGGINYGSQLSVLE 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +  D+L+ TPGR++D     +  +  IE L+IDEADRMLDMGF   ++ +       +Q+
Sbjct: 124 KTHDILVATPGRLMDLLEAEQYNLEGIEWLIIDEADRMLDMGFAATVKEMALQARHRQQS 183

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LL SAT  +  + K S   L  P+ I+V  P      I            K+  L+  L 
Sbjct: 184 LLLSATLNSSGVIKFSRELLTEPEYIDVQPPKRERGKILQWVHLADTDEHKRKLLMSVLQ 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    +    + + + N   S    G  +  + G++ Q  R +I++  K+ T   +
Sbjct: 244 AHPGRQFVFVRTRERVELIANFLRSQFGTGRKIVTLRGDMPQSDRQRIMNELKQTTEITL 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+  V N+D+P +A+ Y+HRIGRT R G+ G A +LV   D   +  
Sbjct: 304 VATDIAARGLDVDDITLVVNYDLPKQADVYLHRIGRTARGGQKGTAVSLVEAHDALLLGR 363

Query: 360 IEKLIEKKVDW 370
           +E+ ++ K+D 
Sbjct: 364 VERYLDAKLDR 374


>gi|22536473|ref|NP_687324.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae
           2603V/R]
 gi|25010353|ref|NP_734748.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae NEM316]
 gi|76787716|ref|YP_329013.1| DEAD/DEAH box helicase [Streptococcus agalactiae A909]
 gi|77404947|ref|ZP_00782048.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae H36B]
 gi|77410606|ref|ZP_00786966.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae CJB111]
 gi|22533303|gb|AAM99196.1|AE014204_14 ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 2603V/R]
 gi|23094705|emb|CAD45924.1| unknown [Streptococcus agalactiae NEM316]
 gi|76562773|gb|ABA45357.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae A909]
 gi|77163321|gb|EAO74272.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae CJB111]
 gi|77176386|gb|EAO79154.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae H36B]
          Length = 447

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 117/366 (31%), Positives = 176/366 (48%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D    P +  A+ +  +V PT +Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDFNFKPYIQRALDELKFVDPTDVQAKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNK 117
             L++    V++    I  P+REL  Q+    ++  ++    + ++             K
Sbjct: 61  EKLDESSDDVQVV---ITAPSRELGTQIYQATKQIAEHSEQEIRVVNYVGGTDKLRQIEK 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++     V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LKVSQPHIVIGTPGRIYDLVKSGDLAIHKAHTFVVDEADMTLDMGFLDTVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEKIKTATVIADTI---DNWLLSTKGRDKNAQIL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L         +IF N K+    L   L   G  V  IHG I  R R +I++  K    +
Sbjct: 235 ELSKLMQPYLAMIFVNTKERADELHSYLSSNGLKVAKIHGGIAPRERKRIMNQVKNLEFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EKL
Sbjct: 355 RELEKL 360


>gi|26344992|dbj|BAC36145.1| unnamed protein product [Mus musculus]
          Length = 546

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 120/492 (24%), Positives = 201/492 (40%), Gaps = 41/492 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F  +GL P+++ AV D G+ +PT IQ K IPL L+  D+   A+TG+GKTA++ +PM   
Sbjct: 9   FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQS 68

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQ 115
            L     G    +  R L+L PT+ELA Q     ++        V +            +
Sbjct: 69  LLHKKATGPVMEQAVRGLVLVPTKELARQAQAMIQQLAAYCARDVRVANVSAAEDSASQR 128

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              +E+   V+      +         L +++E+LV+DEAD +   GF   ++++   +P
Sbjct: 129 AVLMEKPDVVVGTPSRVLSHLQQNTLKLRDSLELLVVDEADLLFSFGFEDELKSLLCHLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q  L SAT  +++Q + E  L NP  +++             F         K  LL
Sbjct: 189 RIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL+        ++F N  +    L   LE+     C ++G +  RSR  I+S F +G 
Sbjct: 249 YALLKLSLIRGKALLFVNTLERGYRLRLFLEQFSIPSCVLNGELPLRSRCHIISQFNQGL 308

Query: 296 IQL---------------------------MVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
                                                ARG+D   V  V NFD+P  AE 
Sbjct: 309 YDCVIATDAEILGPQVKGKRRGRGSKGNKASDPESGVARGIDFHHVSAVLNFDLPPTAEA 368

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           Y+HR GRT RA   G   T V   +   +  IE L+  + +     L      +E+I+  
Sbjct: 369 YVHRAGRTARANNPGIVLTFVLPAEQPFLGKIEDLLSGEGEA--PILLPYQFQMEEIESF 426

Query: 389 QHNHARKNNPIPQKSTGFDRRKK-----NYSSQKSHIPLKESEKISKLQQDIQENDADSL 443
           ++        + +++    R K+      +S +           +  L+ D+  + A   
Sbjct: 427 RYRCRDAMRSVTKQAIREARLKEIKEELLHSGKLKTYFEDNPRDLQLLRHDLPLHPAVVK 486

Query: 444 GFRGNMPAFMLP 455
              G++P +++P
Sbjct: 487 PHLGHVPDYLVP 498


>gi|294655023|ref|XP_457109.2| DEHA2B03322p [Debaryomyces hansenii CBS767]
 gi|218512020|sp|Q6BXG0|DBP4_DEBHA RecName: Full=ATP-dependent RNA helicase DBP4
 gi|199429633|emb|CAG85100.2| DEHA2B03322p [Debaryomyces hansenii]
          Length = 766

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 122/449 (27%), Positives = 211/449 (46%), Gaps = 13/449 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL +S +    + +A +   T IQ KTIP+ L+  DV G A+TG+GKT +F++P + 
Sbjct: 47  QFSDLPISEETARGLKEASFASLTDIQKKTIPISLKGEDVMGTAKTGSGKTLAFLIPTIE 106

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L + +         LI+ PTRELA Q+ +   K GK+ N +  L+ GG   + + +++ 
Sbjct: 107 SLIRNKITEYDGLAALIISPTRELAVQIFEVLVKIGKHNNFSAGLVTGGKDVKYEKERVS 166

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++               +  +N+++LV+DEADR LDMGF   I NI   +P TRQT
Sbjct: 167 KMNILVGTPGRISQHLNESVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPPTRQT 226

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT +D ++ ++   L NPKR+ +++    + T E            +   +     
Sbjct: 227 LLFSATQSDSVKDLARLSLANPKRVGISSDQELSATPESLEQYYIKIPLDEKLDVLWSFI 286

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC--AIHGNIDQRSRMKILSNFKEGTIQL 298
                   ++F +  K V     +       +    ++G   Q SRM+    F +     
Sbjct: 287 KSHLKSKILVFFSSSKQVQYAYETFRTLQPGISLLKLYGRHKQTSRMETTMKFSQAQHAC 346

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+ ARGLD P +  V   D P  A  Y+HR+GR  R GR GK+  ++   +   + 
Sbjct: 347 LFATDIVARGLDFPAIDWVVQIDCPEDAATYVHRVGRAARFGRAGKSLMMLLPSEENGM- 405

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +++L   K++    ++   N    K  I     +        K+ G    ++ + S   
Sbjct: 406 -LKRLNNNKIELKFMNIKQKN----KKTIRPQLQSLCFQDPMIKNLG----QRAFISYFR 456

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRG 447
            + +++ + I K+ +   +  A SLG  G
Sbjct: 457 SVYVQKDKDIFKIDELPSDKFARSLGLPG 485


>gi|170681328|ref|YP_001743833.1| ATP-dependent RNA helicase DbpA [Escherichia coli SMS-3-5]
 gi|170519046|gb|ACB17224.1| ATP-independent RNA helicase DbpA [Escherichia coli SMS-3-5]
          Length = 457

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 208/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y  +SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETFSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W     +S   PLE
Sbjct: 357 SDMLQIKLNWQTPPANSSIVPLE 379


>gi|126135590|ref|XP_001384319.1| Suppressor of the cold-sensitive snRNP biogenesis mutant brr1-1
           [Scheffersomyces stipitis CBS 6054]
 gi|146325738|sp|A3LST5|SUB2_PICST RecName: Full=ATP-dependent RNA helicase SUB2
 gi|126091517|gb|ABN66290.1| Suppressor of the cold-sensitive snRNP biogenesis mutant brr1-1
           [Scheffersomyces stipitis CBS 6054]
          Length = 433

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 97/375 (25%), Positives = 169/375 (45%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q   IP  +   DV   A++G GKTA FVL  L  
Sbjct: 51  FRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQ 110

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+     +         E   ++  + A   +                     + K  + 
Sbjct: 111 LDPVPGEISTLVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGTPIKRDIEKLKSKDT 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+    N   + ++N++  VIDE D++   +     +Q+I    P  +Q 
Sbjct: 171 CPHIVVATPGRLHALVNEKAIRLSNVKSFVIDECDKVLESIDMRRDVQDIFRATPHQKQV 230

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ E++ V + F+QNP  I V+  +         +     +  K        L 
Sbjct: 231 MMFSATLSQEIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYIKLEEKEKNR--KLSDLL 288

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF    +    L   L    F   A+H  + Q  R++   +FKE   ++ V
Sbjct: 289 DSLEFNQVIIFVKSTQRANELNKLLCSCNFPSIAVHSGLPQEERIERYRSFKEFNKRICV 348

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           ++D+  RG+DI  +    N+D+PN A+ Y+HR+GR GR G  G A +LV +KED + ++ 
Sbjct: 349 STDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAISLVGSKEDEEVLEK 408

Query: 360 IEKLIEKKVDWLNGD 374
           I+   + K+     +
Sbjct: 409 IQSRFDVKITEFPEE 423


>gi|325183657|emb|CCA18117.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 426

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 92/375 (24%), Positives = 157/375 (41%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+ + AV+D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 47  FRDFILKPECLRAVVDCGFEHPSEVQHECIPQAVLGMDIICQAKSGMGKTAVFVLATLHQ 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    ++ +             A   + F KY  N    V      I  +    K    
Sbjct: 107 IEPVDGQISVMVLCHTRELAFQIAHEYERFSKYLHNVKTAVFYGGIAITKDRDTLKSNTP 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +     +   L      ++ +    +  +     +Q I    P  +Q ++
Sbjct: 167 HIVVGTPGRILGLLREKSIKLDKVKHFVMDECDKLLEALDMRRDVQEIFRSTPHDKQVMM 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F Q+P  I V+  +         +    A+  K   L +      
Sbjct: 227 FSATLSKEIRPVCRKFCQDPMEIYVDDETKLTLHGLQQYYIKLAESEKNRKLNEL--LDA 284

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF ++K     L   L +  F    I  ++ Q  R+K   +FK+   +L+V +
Sbjct: 285 LEFNQVVIFVSKKNRARELNRLLNECNFPAICITSDLTQEERIKRYKSFKDFQKRLLVTT 344

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDAIE 361
           DL  RG+DI  V  V N+D PN ++ Y+HR+GR GR G  G + + + + ED   +  ++
Sbjct: 345 DLFGRGMDIERVNIVINYDFPNDSDQYLHRVGRAGRFGTKGLSISFISSDEDSAMLAQVQ 404

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L   + 
Sbjct: 405 SRFEVNVPELPDSID 419


>gi|256070997|ref|XP_002571828.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238656976|emb|CAZ28058.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 426

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 94/383 (24%), Positives = 169/383 (44%), Gaps = 5/383 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FV+  +  
Sbjct: 45  FRDFILKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVIATLQQ 104

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  +G A   +             ++  + F KY     + V      I  + +      
Sbjct: 105 LDPEGEANTTVLVLCHTRELAFQISKEYERFSKYMPKIKVGVFFGGMPIRKDIETLTKSP 164

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+      +    ++   L +    ++ +    +  +     +Q I  + P  +Q +
Sbjct: 165 VHIVVGTPGRILDLVRSKTLKLQHVKHFIIDECDKMLDTLDMRRDVQEIFRMTPHQKQVM 224

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM+ E++ V  NF+Q+P  I +   S               +  K   L +     
Sbjct: 225 MFSATMSKEIRPVCRNFMQDPLEIFIENDSKLTLHGLRQHYVKVKENEKNRKLFEL--LD 282

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      IIF    +  + L   L  Q F   A+H N+ Q  R++    FK    +L+VA
Sbjct: 283 ELQFNQVIIFVKSVQRCMALAQLLVDQNFPAIAMHRNMAQEERLERYQAFKNFQKRLLVA 342

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAI 360
           ++L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T ++ E D K ++ +
Sbjct: 343 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDEVDAKVLNEV 402

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           +   E  +  L  D+  ++  +E
Sbjct: 403 QNRFEVNISELP-DVMEISSYME 424


>gi|41282082|ref|NP_571016.2| pl10 [Danio rerio]
 gi|37590512|gb|AAH59794.1| Pl10 [Danio rerio]
          Length = 688

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 140/431 (32%), Positives = 219/431 (50%), Gaps = 34/431 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +   ++  +  + Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 210 FHDLEMGEIIMGNINLSRYTRPTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQ 269

Query: 63  LEKGRA-------------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV 103
           +                        R + P +L+L PTRELA Q+ D   K+    ++  
Sbjct: 270 IYTDGPGEALQAAKNSAQENGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRSHVRP 329

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163
            ++ GG     Q + LERG  +L+ TPGR+LD   RGK+ ++    LV+DEADRMLDMGF
Sbjct: 330 CVVYGGADIGQQIRDLERGCHLLVATPGRLLDMMERGKIGLDYCNYLVLDEADRMLDMGF 389

Query: 164 IPYIQNITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
            P I+ I            QT++FSAT   E+Q ++ +FL++   + V    ST+E I  
Sbjct: 390 EPQIRRIVEQDTMPPKGLRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQ 449

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
             V       +   L       +D++   ++F   KK    L   L ++G++  +IHG+ 
Sbjct: 450 KVVWVEENDKRSFLLDLLNATGKDSL--TLVFVETKKGADALEDFLYREGYACTSIHGDR 507

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            QR R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR 
Sbjct: 508 SQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRV 567

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           G  G A +    ++      +  ++ +    +   L SL          +H H   +   
Sbjct: 568 GNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESL--------AYEHQHKSSSRGR 619

Query: 400 PQK-STGFDRR 409
            ++ S GF  R
Sbjct: 620 SKRFSGGFGAR 630


>gi|86141342|ref|ZP_01059888.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Leeuwenhoekiella blandensis MED217]
 gi|85831901|gb|EAQ50356.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Leeuwenhoekiella blandensis MED217]
          Length = 372

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 110/375 (29%), Positives = 189/375 (50%), Gaps = 8/375 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
           +F  LGL+  ++  + + G   PT IQ + IPL+L+    + G AQTGTGKTA++ LP+L
Sbjct: 4   NFKSLGLNKNLIKGLNELGIQTPTEIQAQVIPLLLEGATHLVGQAQTGTGKTAAYGLPIL 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL- 119
             +   +  ++    LIL PTREL+ QVA    K+ K  +      + G        K  
Sbjct: 64  EQINPNQKSIQA---LILCPTRELSQQVAKQLFKFTKYTDKIFTEAVYGGEKIDIQIKNL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R   +++ TPGR++D  +R  + ++ +  +V+DEAD ML MGF   + +I S +     
Sbjct: 121 SRPTQIVVATPGRLIDLLSRKAIDLSQVNTVVLDEADEMLSMGFKQQLDDILSHLRNVEN 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSATM   ++++    +         +     + IEH               +    
Sbjct: 181 KWLFSATMPHGIKQIVNQHMAEDAHRIQISRDVVNKNIEH---KFLQCEEVDKLPILLDF 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 + GIIFC  K     L   L  +  +  A+ G++ Q+ R K++  FK  +++++
Sbjct: 238 LKTKKGERGIIFCKTKAATAKLAKQLIAKNIAAEALQGDMLQKERDKVMRAFKNESLRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+ D+  V ++ +P++ E Y HR GRT RAG+ G +  LV  ++++ + +
Sbjct: 298 VATDIAARGIDVQDLTFVVHYQMPDQEEYYTHRSGRTARAGKEGLSLALVTSKELRILRS 357

Query: 360 IEKLIEKKVDWLNGD 374
            EK +   +  +   
Sbjct: 358 YEKALGIGISEIRAK 372


>gi|242280865|ref|YP_002992994.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
 gi|242123759|gb|ACS81455.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
          Length = 517

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 129/401 (32%), Positives = 214/401 (53%), Gaps = 9/401 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P ++ A+   G+ K TP+Q K++P  L   D+   A+TG+GKT +FVLP+L  L+   
Sbjct: 40  LPPSILNALDKTGWDKLTPVQSKSLPYQLYNRDLMVQAKTGSGKTGAFVLPLLEKLDPN- 98

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
             +   + LIL PTRELA QV    EK  +   L V  + GG+ +  Q ++LE+GA +++
Sbjct: 99  --INYTQALILVPTRELARQVEREAEKIFEGSGLRVLSVYGGVGYGHQREELEKGAHMVV 156

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN-ITSLVPFTRQTLLFSAT 186
            TPGRILDH  +    + ++E L+ DEADRML +GF P ++   + L      T +FSAT
Sbjct: 157 GTPGRILDHLLKRTFDLEDLETLIFDEADRMLSIGFYPDMREVKSYLPRRPISTYMFSAT 216

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + + ++S+ F+  P+ + +++       I+H +    +   ++       +   +   
Sbjct: 217 FPEHVIRLSKEFMYKPQMLSLSSKQVHVTEIDHAYYEVPSMGKER---QLMRILEMENPT 273

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + IIFCN K NV  +   L   GF+   +  ++ Q  R ++L+  ++G+++ +VA+D+AA
Sbjct: 274 SAIIFCNTKANVEFVTAVLNNFGFNAADLTSDLSQSKRERVLAQLRDGSVRFLVATDIAA 333

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL--I 364
           RG+D+PD+ HV  ++ P   E+YIHR GRTGRAG  G A +LV       +  I     I
Sbjct: 334 RGIDVPDLSHVIMYEPPEDKESYIHRAGRTGRAGSSGVAISLVDVIQKIELQRIATAYNI 393

Query: 365 EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
             ++  L  D   L    E++        R    + ++  G
Sbjct: 394 NFEIRELPDDKQVLETINERLTTILEGKFRSRTILERERIG 434


>gi|297741568|emb|CBI32700.3| unnamed protein product [Vitis vinifera]
          Length = 523

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 108/398 (27%), Positives = 192/398 (48%), Gaps = 15/398 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           +F++L    G    ++  + + G+ +PTPIQ + IP++L   +    A TG+GKT +FV 
Sbjct: 124 NFSELSSRYGCESYLLHNLAELGFKEPTPIQRQAIPVLLSGRECFACAPTGSGKTLAFVC 183

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           PML  L+         R +IL PTRELAAQ A   +K  K       + +          
Sbjct: 184 PMLMKLKHASKDG--IRAVILCPTRELAAQTARESKKLAKG--KKFYIKLLTKELLRSGD 239

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             +   D+LI TP R+     + KL ++ +E LV+DE+D++ ++G +  I  +       
Sbjct: 240 ISKLPCDILISTPLRLRSAIRKKKLDLSRVEYLVLDESDKLFELGLVKQIDAVVKACSNP 299

Query: 178 RQTLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
                 FSAT+ D +++++   + +  R+ +   +S +E I+   V   ++  K  A   
Sbjct: 300 SIIRSLFSATLPDFVEELARTIMHDAVRVIIGRKNSASELIKQKLVFAGSEEGKLLA--L 357

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +   ++      ++F   K+    L   L      V  IH ++ Q  R   + +F+ G  
Sbjct: 358 RQSFAESLNPPILLFVQSKERAKELYTELAFDDIRVDVIHADLSQSQRENAVDDFRAGKT 417

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+ ARG+D   +  V N+D P+    YIHRIGR+GRAGR G+A T+  ++D+  
Sbjct: 418 WVLIATDVIARGMDFKGINCVINYDFPDSPAAYIHRIGRSGRAGRTGEAITIYTEDDVPF 477

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           +  I  ++      +   + +L     K+   +H   R
Sbjct: 478 LRNIANVMAASGCEVPSWIMALP----KLKWKKHRPQR 511


>gi|225439904|ref|XP_002279705.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 524

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 108/398 (27%), Positives = 192/398 (48%), Gaps = 15/398 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           +F++L    G    ++  + + G+ +PTPIQ + IP++L   +    A TG+GKT +FV 
Sbjct: 125 NFSELSSRYGCESYLLHNLAELGFKEPTPIQRQAIPVLLSGRECFACAPTGSGKTLAFVC 184

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           PML  L+         R +IL PTRELAAQ A   +K  K       + +          
Sbjct: 185 PMLMKLKHASKDG--IRAVILCPTRELAAQTARESKKLAKG--KKFYIKLLTKELLRSGD 240

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             +   D+LI TP R+     + KL ++ +E LV+DE+D++ ++G +  I  +       
Sbjct: 241 ISKLPCDILISTPLRLRSAIRKKKLDLSRVEYLVLDESDKLFELGLVKQIDAVVKACSNP 300

Query: 178 RQTLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
                 FSAT+ D +++++   + +  R+ +   +S +E I+   V   ++  K  A   
Sbjct: 301 SIIRSLFSATLPDFVEELARTIMHDAVRVIIGRKNSASELIKQKLVFAGSEEGKLLA--L 358

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +   ++      ++F   K+    L   L      V  IH ++ Q  R   + +F+ G  
Sbjct: 359 RQSFAESLNPPILLFVQSKERAKELYTELAFDDIRVDVIHADLSQSQRENAVDDFRAGKT 418

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+ ARG+D   +  V N+D P+    YIHRIGR+GRAGR G+A T+  ++D+  
Sbjct: 419 WVLIATDVIARGMDFKGINCVINYDFPDSPAAYIHRIGRSGRAGRTGEAITIYTEDDVPF 478

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           +  I  ++      +   + +L     K+   +H   R
Sbjct: 479 LRNIANVMAASGCEVPSWIMALP----KLKWKKHRPQR 512


>gi|312215634|emb|CBX95586.1| similar to eukaryotic initiation factor 4A-I [Leptosphaeria
           maculans]
          Length = 396

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L  +++  V   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F +  L 
Sbjct: 24  SFDNMNLKAELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISTLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+  + LIL PTRELA Q+       G   ++     IGG       K L+ 
Sbjct: 84  KIDSN---VKACQALILAPTRELAQQIQKVVVAIGDFMDVQCHACIGGTSVRDDMKALQD 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I  L+P + Q +
Sbjct: 141 GPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 201 LLSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEDWKLDT--LSDLYE 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A
Sbjct: 259 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQIQRDVIMKEFRSGSSRVLIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 379 QFYSTQIEEMPMNVADL 395


>gi|269968536|ref|ZP_06182542.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|269826871|gb|EEZ81199.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 372

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 134/367 (36%), Positives = 207/367 (56%), Gaps = 11/367 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            FADLGL P +V  +    Y +PTPIQ ++IP +L+  D+ G A TG+GKTA+F LP   
Sbjct: 9   TFADLGLIPTLVERLEALEYSQPTPIQSRSIPDILEGKDIIGGANTGSGKTAAFSLPILQ 68

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV--ALLIGGIPFEAQ 115
            ++   E    R      LIL PTRELA+QVA N + Y  +    +    + GG+    Q
Sbjct: 69  KIVQQDESNNRRGNFVSHLILVPTRELASQVAYNVKSYSYHLRDKIKTVAVFGGVSVNPQ 128

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G D+++ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  I +L+P
Sbjct: 129 MLALRGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILALLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +QTLLFSAT  D++  +++  L++P  +++ +  ++        V    + +    L+
Sbjct: 189 EKKQTLLFSATFPDKVTTLAQQLLRDPVEVQLQSAEASTLVQRVFSVNKGEKTAVLAHLI 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +Q        +  +IF N K    +L   L K+G +    HG+  Q +R ++L  FK G 
Sbjct: 249 KQHQW-----RQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKSGE 303

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           IQ+++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G   +L+  +D  
Sbjct: 304 IQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDDYH 363

Query: 356 HIDAIEK 362
           H   IEK
Sbjct: 364 HFKVIEK 370


>gi|196002119|ref|XP_002110927.1| hypothetical protein TRIADDRAFT_21982 [Trichoplax adhaerens]
 gi|190586878|gb|EDV26931.1| hypothetical protein TRIADDRAFT_21982 [Trichoplax adhaerens]
          Length = 435

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 141/429 (32%), Positives = 219/429 (51%), Gaps = 17/429 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+  +V      G  K T +Q K IP +LQ  +  G A+TG+GKTA+F LP+L 
Sbjct: 6   SFADLGLNTWLVKQCRAIGLAKATAVQEKCIPPILQGQNCIGCAKTGSGKTAAFALPILQ 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L K          LIL PTRELA Q+AD F  +GK   +  A++IGG+   +Q+  L +
Sbjct: 66  NLAK---EPFGIYALILTPTRELAFQLADQFRAFGKPIGMRDAIVIGGLDIISQSIALSK 122

Query: 122 GADVLICTPGRILDHFNRG-KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR+ D  +   K+  + I+ LV+DEADR+L+  F P +  I  ++P  RQT
Sbjct: 123 KPHIVIATPGRLADLIDNDSKVHFSKIKFLVLDEADRLLEASFGPDLGKIFEILPEDRQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL----- 235
           LLFSATMT+ + +  E        I  +T    + T+E          +           
Sbjct: 183 LLFSATMTNAMARAQEVAASKKPFIYEDTDMKISATVEQLDQHYLLMPAVVKDCYFVYLI 242

Query: 236 -------QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
                  ++  +    +       + +++   L   L +  FS  A+H  + QR R+  L
Sbjct: 243 KQLSLELEKNPRWNMMIFTSTYNFSNRRSCQILAIMLSRLEFSCAALHSLMPQRQRLGSL 302

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           + FK G ++++VA+D+A+RGLDIP V  V N++VP  A++YIHR+GRT RAG+ G A TL
Sbjct: 303 ARFKNGLLKILVATDVASRGLDIPTVEAVVNYNVPLSADDYIHRVGRTARAGKKGMAVTL 362

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH-ARKNNPIPQKSTGFD 407
           + + D+  I  IE     K+     D   +   L  + + +     R       ++   +
Sbjct: 363 MTQYDVNRIHNIETTTNVKLLKYEVDEHDVLKLLNIVTMLRKEIDVRLEESNFGRNRELN 422

Query: 408 RRKKNYSSQ 416
           +RK  + S+
Sbjct: 423 KRKMTFLSK 431


>gi|204927708|ref|ZP_03218909.1| ATP-dependent rna helicase, dead/deah box family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204323050|gb|EDZ08246.1| ATP-dependent rna helicase, dead/deah box family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 457

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 135/373 (36%), Positives = 213/373 (57%), Gaps = 9/373 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF AQ   L+
Sbjct: 64  RIDVTLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIHFAPATRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D +  +S    Q P RIE++T     + +       +   + +   L Q L 
Sbjct: 181 LLFSATWPDAIAAISGRVQQQPIRIEIDTV----DALPAIEQQFFETSAHEKISLLQTLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN KK+   +C +L   G S  A+HG+++QR R + L  F  G+ +++V
Sbjct: 237 SQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +  A E+ +  + +
Sbjct: 297 ATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANIL 356

Query: 361 EKLIEKKVDWLNG 373
            ++++ K++WLN 
Sbjct: 357 SEMLQLKLNWLNA 369


>gi|68472255|ref|XP_719923.1| hypothetical protein CaO19.6831 [Candida albicans SC5314]
 gi|68472490|ref|XP_719806.1| hypothetical protein CaO19.14123 [Candida albicans SC5314]
 gi|74656514|sp|Q5ADL0|PRP5_CANAL RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|46441642|gb|EAL00938.1| hypothetical protein CaO19.14123 [Candida albicans SC5314]
 gi|46441768|gb|EAL01063.1| hypothetical protein CaO19.6831 [Candida albicans SC5314]
          Length = 884

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 216/469 (46%), Gaps = 28/469 (5%)

Query: 1   MDFADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           + ++ L L   +   + D   + KP+ IQ + +P +L   DV GIA+TG+GKT S+VLPM
Sbjct: 293 LKWSHLALPTNLSSVIHDKLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPM 352

Query: 60  LTILEKGRARVRM--PRTLILEPTRELAAQVADNF-EKYGKNYNLTVALLIGGIPFEAQN 116
           L  ++  +       P  LIL PTRELA Q+         +N NL V    GG   E Q 
Sbjct: 353 LRHIQDQQFSKDNQGPIGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQI 412

Query: 117 KKLERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L++G ++++ TPGR++D     +   L +     +V+DEADRM D+GF P +  I + 
Sbjct: 413 NELKKGVEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQ 472

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKR----------IEVNTPSSTAETIEHCFVA 223
           +   RQT+LFSAT   +++ +++  L +P             E+       ET       
Sbjct: 473 IRPDRQTVLFSATFPRKMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLFETSAEEQDK 532

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHS--LEKQGFSVCAIHGNIDQ 281
              Q  +K   +    Q +      ++F  ++ +   L  +    K          +   
Sbjct: 533 YKQQRVEKLHDILTNYQIEHPDSKILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMD 592

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R          +  I +++A+ +AARGLD+ ++G V NFD PN  E+Y+HR+GRTGRAG 
Sbjct: 593 RKYAIKEFASMDSGINILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGA 652

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            G A T V+    K +  + K ++          S ++P LE  +IA     +      +
Sbjct: 653 KGNAITFVSSSQPKEVFNLVKALKLS-------HSDIDPKLE--EIANKFVTKVKAGKEK 703

Query: 402 KSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMP 450
            S+GF  +  +   +     LK  ++    QQ  ++ +        + P
Sbjct: 704 ISSGFGGKGLDNLQEVRDNKLKLEKQRFGDQQPQRQQEETETKKSNDEP 752


>gi|331694934|ref|YP_004331173.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326949623|gb|AEA23320.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 621

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 144/481 (29%), Positives = 232/481 (48%), Gaps = 29/481 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+ P++V A+ + G  +   IQ  T+PL L   D+ G A+TGTGKT  F +P+L 
Sbjct: 98  TFAELGVRPEIVSALAEVGIERTFAIQELTLPLALAGEDLIGQARTGTGKTLGFGVPLLQ 157

Query: 62  ILEKGRARV-------------RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
            +     R               +P+ L++ PTREL  QVA +    G++  + V  + G
Sbjct: 158 RIVPPAERPAATAEGEAADRTKDVPQALVVVPTRELCVQVAQDLTDAGRDLGIRVTAIYG 217

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G  +E Q   L +G DV++ TPGR+LD   +  L +  + +LV+DEAD MLD+GF+P ++
Sbjct: 218 GRAYEPQLNALRKGVDVVVGTPGRLLDLAEQRHLALGRVGVLVLDEADEMLDLGFLPDVE 277

Query: 169 NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
            I  ++P  RQT+LFSATM   +  +S  F  N         S      E      Y  +
Sbjct: 278 RILRMLPEERQTMLFSATMPGPIIALSRAF-LNRPTHIRAEESDQGSIHERTKQHVYRAH 336

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           +     L   +         +IF   K+ V  +   L ++GF+  A+HG++ Q +R + L
Sbjct: 337 AMDKVELLTRVLQAKDRGLTMIFARTKRTVQRVADDLAERGFAAAAVHGDLGQGAREQAL 396

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             F+ G + ++VA+D+AARG+D+ DV HV N+  P  A+ Y+HRIGRTGRAG+ G A TL
Sbjct: 397 RAFRSGKVDVLVATDVAARGIDVTDVTHVINYQCPEDAKTYVHRIGRTGRAGKEGVAVTL 456

Query: 349 VAKEDIKHIDAIEKLIEKKVDW----------LNGDLSSLNPPLEKIDIAQHNHARKNNP 398
           V  +++     +   +   +D           L  DL        ++ +++   A  +  
Sbjct: 457 VDWDEMPRWKLVSDELGLGIDEPVETYSTSDHLYTDLDIPTDATGRLPLSKRTRAGLSAE 516

Query: 399 ---IPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLP 455
                    G  RR+     + +  P K S   ++ +  +  + A         P  + P
Sbjct: 517 YVDTEGDHQGAGRRR--NRDEGARRPRKASRARTRTRGGVSVDAAAPAQPAEGAPTGIAP 574

Query: 456 K 456
            
Sbjct: 575 S 575


>gi|157875861|ref|XP_001686302.1| ATP-dependent RNA helicase [Leishmania major strain Friedlin]
 gi|68129376|emb|CAJ07917.1| putative ATP-dependent RNA helicase [Leishmania major strain
           Friedlin]
          Length = 803

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 125/380 (32%), Positives = 199/380 (52%), Gaps = 8/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ A+L  G+  PTPIQ K IP +LQ +DV  +A+TG+GKTA+F++PML  
Sbjct: 24  FQSFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLNT 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  A++   R L+L PTREL+ Q+  N     K  +L  A L+GG   + Q + L   
Sbjct: 84  L-KAHAKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDSMDQQFELLASN 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV++ TPGR+L       L + ++  LV+DEADR+ ++G  P I  I   +P + Q  L
Sbjct: 143 PDVVVATPGRLLHIMEEASLHLTSVRCLVLDEADRLFELGLQPQIGAIMQKLPESCQRAL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK-----CALLQQ 237
           FSATM   L + +   L NP  I +++    ++ ++                     +  
Sbjct: 203 FSATMPTVLAEFTSAGLHNPVVIRLDSEMKLSDQLKQSAFLVRNDEKVAALIVLLKRVLH 262

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + ++       +IF   K +V  L   L     S  A+HG +DQ +R   + +F +    
Sbjct: 263 VGEAAANSAQALIFSESKFHVEFLQMILTHYSISTSAVHGQMDQEARRLAVRSFAKRETS 322

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MV +D+AARGLD+P + +V NF  P   + ++HR+GR  RAGR G A++++  ED  + 
Sbjct: 323 VMVVTDVAARGLDLPLLDNVVNFSFPFNPKLFVHRVGRVARAGRSGTAYSIMTFEDFPYY 382

Query: 358 DAIEKLIEKKVD--WLNGDL 375
             + + I + +    + GDL
Sbjct: 383 VDLMQFIGRPLQSAPVPGDL 402


>gi|313221011|emb|CBY31843.1| unnamed protein product [Oikopleura dioica]
          Length = 497

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 121/389 (31%), Positives = 197/389 (50%), Gaps = 14/389 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D+ L P+++  +    Y KPTPIQ   + ++    D+   AQTG+GKTA+ ++P++ 
Sbjct: 66  TFSDMKLCPEIMENLQRMKYTKPTPIQQYAVSILGSGSDLMATAQTGSGKTAAMMIPIIN 125

Query: 62  ILEK------GRARVRMPRTLILEPTRELAAQVAD-NFEKYGKNYNLTVALLIGGIPFEA 114
            L        G    +    +++ PTRELA Q+ D  ++  G+N N+   L  GG     
Sbjct: 126 YLRMSNIGSRGYNACQKVDCIVVAPTRELATQLYDECYKFCGRNTNVVPGLCYGGTGTRE 185

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q++++  G +++I TPGR+ D   +G +  +  + LV+DEADRMLD GF P I+ I + +
Sbjct: 186 QSQRIREGCNIVIGTPGRLKDFLEKGVIDASEAQFLVLDEADRMLDQGFGPDIREINAYL 245

Query: 175 PFTRQTLL----FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
           P           FSAT    +Q  ++++L+             A T          +  K
Sbjct: 246 PPKDTGKRTTALFSATFETAIQSAAQDYLRPNYIFVAIGIIGGANTAVTQQFEQLQKREK 305

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
               ++  +  Q+  K  +IF   K    +L   L   G     IHG+  QR R + +++
Sbjct: 306 FNRTVE--ICKQNQGKRTLIFVATKIFADSLGSMLVGDGIKATTIHGDRQQRDREQAIND 363

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV- 349
            K   + ++VA+D+AARG+DI DV  V NFD P   E+YIHRIGRT R G+ G A T + 
Sbjct: 364 LKANRMHVLVATDVAARGIDIDDVEVVINFDFPKELESYIHRIGRTARKGKKGLAITFID 423

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           A +D +H  ++ K+ +     +   L  +
Sbjct: 424 AMKDRQHASSLVKICQDAKQTVPPFLQQM 452


>gi|157124559|ref|XP_001654105.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108873951|gb|EAT38176.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 524

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 103/393 (26%), Positives = 171/393 (43%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  L L P+++  V   G+  P+ IQ   +P +L     ++   +Q+GTGKTA+FVL M
Sbjct: 138 TFEALHLKPELLQGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 197

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++    R   P+ + L PT ELA Q  +   K  K                A+  KL
Sbjct: 198 LSRVDP---RKNYPQVICLSPTYELAIQTGEVAAKMAKFCPEIKLRYAVRGEEIAKGAKL 254

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             R   L      ++ +    +   G       I   +    Q
Sbjct: 255 TDHIIIGTPGKLMDWGIKFRAFDLKKITVFVLDEADVMIATQGHQDQCIRIHKQLSSRCQ 314

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSAT   E+ + +E  + NP  I +     + + I+  +V    Q  K        +
Sbjct: 315 MMFFSATYEREVMEFAEYIVPNPIVIRLAREQESLDNIKQYYVKCRNQDDKY--QAISNI 372

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   IIFC+ +K    L   + + G SV  + G +    R+ +L  F+ G  +++
Sbjct: 373 YGVITVGQAIIFCHTRKTASWLSGKMSQDGHSVAVLSGELTVEQRLAVLDRFRAGLEKVL 432

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           + +++ +RG+D+  V  V NFD+P         E Y+HRIGRTGR G++G A  LV +  
Sbjct: 433 ITTNVLSRGIDVEQVTIVVNFDLPMDQHGRADCETYLHRIGRTGRFGKNGIAINLVDSDR 492

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
            +    +IE   +KK+  L+ + S     +EKI
Sbjct: 493 SMAICRSIEAHFQKKIHLLDAENSD---EIEKI 522


>gi|304367670|gb|ADM26640.1| vasa-like protein [Branchiostoma floridae]
          Length = 785

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 125/389 (32%), Positives = 205/389 (52%), Gaps = 16/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  L       V  A Y +PTP+Q  +IP+VL   D+   AQTG+GKTA+F+LP+LT
Sbjct: 336 SFDEAQLYETFRANVAKAKYDRPTPVQKYSIPIVLGGRDLMACAQTGSGKTAAFLLPVLT 395

Query: 62  ILEK------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            + K        + ++ P+ + + PTRELA Q+     K+     L   +  GG+     
Sbjct: 396 GMMKEGLAGSSFSNIQEPQAICVAPTRELAIQIFSEARKFSYGTMLRPCIAYGGVSVMHH 455

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN------ 169
             +++RG  +L+ TPGR+LD  ++G + +  ++ L++DEADRMLDMGF P I+       
Sbjct: 456 KSQIQRGCHLLVATPGRLLDFIDKGVISIKKLKYLILDEADRMLDMGFEPEIRRLVETAS 515

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                   RQTL+FSAT  +E+QK++++FL++   + +         +E   + +     
Sbjct: 516 WGMPAKGERQTLMFSATFPEEIQKLAQDFLEDYIFLTIGRVGGANTDVEQTVMESSQYDK 575

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           ++          Q   +  ++F   K+N   L   L + GF   +IHG+  Q+ R + L 
Sbjct: 576 REKLTDILGNLGQ---ERVLVFVETKRNADFLASYLSQSGFPTTSIHGDRLQKEREEALM 632

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F+ G   ++VA+ +AARGLDIP V  V N+D+P+  + Y+HRIGRTGR G  GKA +  
Sbjct: 633 DFRTGRAPVLVATSVAARGLDIPKVMVVVNYDLPSSIDEYVHRIGRTGRVGNTGKAISFY 692

Query: 350 -AKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
            + +D     ++ K++      +   L  
Sbjct: 693 DSDKDASLARSLVKVLADAQQNVPDWLED 721


>gi|34498308|ref|NP_902523.1| ATP-dependent RNA helicase DbpA [Chromobacterium violaceum ATCC
           12472]
 gi|34104162|gb|AAQ60521.1| ATP-dependent RNA helicase dbpA [Chromobacterium violaceum ATCC
           12472]
          Length = 460

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 132/377 (35%), Positives = 205/377 (54%), Gaps = 10/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L   ++  +   GY + T IQ  ++P +L+  D+   A+TG+GKTA+F L +L+ 
Sbjct: 6   FSTLPLPAPLLSNLDSLGYHQMTAIQAASLPAILEGRDLIAQAKTGSGKTAAFGLGLLSS 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL-IGGIPFEAQNKKLER 121
           +      V+    L++ PTRELA QVA    +  +  +    +   GG P   Q   LE 
Sbjct: 66  INPRWFGVQ---ALVMCPTRELADQVAQEIRRLARAIDNIKVVTLTGGTPMGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  R  L +  ++ LV+DEADRM+DMGFI  I  I    P TRQTL
Sbjct: 123 GAHIVVGTPGRLQDHLFRETLNLTGVKTLVLDEADRMIDMGFIEEIVGIVRACPRTRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  ++++K S  FL+NP  ++V +        +  +        +  + + +    
Sbjct: 183 LFSATYPEDIRKASAQFLKNPVEVKVESLHKADHIEQWFYKVKPETRLETVSRILR---- 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FCN ++    L   L++QGF    +HG+++QR R +IL  F   +  ++VA
Sbjct: 239 HLRPTSALAFCNTRERCKELVRELQEQGFHALTLHGDLEQRERDQILLRFANKSATVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++  V N DV +  E +IHRIGRTGR  +HG A TL    + K +  IE
Sbjct: 299 TDVAARGLDIKELDVVINVDVTHDPEVHIHRIGRTGRGEQHGLALTLATDSEAKRLVQIE 358

Query: 362 KLIEKKVDWLNGDLSSL 378
              + ++ W   D+  L
Sbjct: 359 NYQQAELTW--ADVEEL 373


>gi|330947845|ref|XP_003306982.1| hypothetical protein PTT_20301 [Pyrenophora teres f. teres 0-1]
 gi|311315216|gb|EFQ84920.1| hypothetical protein PTT_20301 [Pyrenophora teres f. teres 0-1]
          Length = 808

 Score =  136 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 130/456 (28%), Positives = 208/456 (45%), Gaps = 26/456 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF DL LS      +  + +   T +Q K+IPL LQ HD+ G A+TG+GKT SF++P+L 
Sbjct: 50  DFTDLPLSDPTKQGLKSSHFAVMTDVQAKSIPLALQGHDILGAAKTGSGKTLSFIIPVLE 109

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNKK 118
            L + +          LIL PTRELA Q+ D   K G++ ++  A LLIGG   + + + 
Sbjct: 110 NLYRLQHIGPDAGLGALILSPTRELAIQIFDVLRKIGRHGHMFAAGLLIGGKSLKDEREA 169

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +   ++      +          +++++ILV+DEADR+LDMGF   +  I   +P  R
Sbjct: 170 LTKMNILVATPGRMLQHLSQTAAFSVDDLKILVLDEADRILDMGFQRDVDAIVEYLPKER 229

Query: 179 QTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           QTLLFSAT + ++      +              S              Q  K   L   
Sbjct: 230 QTLLFSATQSKKVSDLARLSLQDPEYVSVHAEDKSATPKGLTQNYIICPQEEKLDTLWSF 289

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +  S+ +         +    V       + G  +  IHG   Q +R+   + F      
Sbjct: 290 IQASKKSKILCFFSSAKTVRFVYESFRHMQPGIPLLHIHGRQKQGARLDTTAKFSAAKHS 349

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            + A+D+AARGLD P V  V   D P+  + YIHR+GRT R  R G+    +A  + + +
Sbjct: 350 CLFATDVAARGLDFPAVDFVIQVDCPDDVDTYIHRVGRTARYNREGRGVLFLAPSEEEGM 409

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             +++L  K+V            P+E I++ Q    R++     ++  F      Y  QK
Sbjct: 410 --LKRLEAKRV------------PVEAINVRQKK--RQSIKDQLQNMCFQDPALKYLGQK 453

Query: 418 SHIP------LKESEKISKLQQDIQENDADSLGFRG 447
           + +       L++ +++ KL++   E  A SLG  G
Sbjct: 454 AFMTHVKSIYLQKDKEVFKLKEYNLEAYAASLGLPG 489


>gi|326503202|dbj|BAJ99226.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 591

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 109/396 (27%), Positives = 197/396 (49%), Gaps = 11/396 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L +S     A+ +  Y     IQ ++IP +L+  DV G A+TG+GKT +F++P +
Sbjct: 97  MLFSELPISELTAKAIREMNYTHLAQIQARSIPHLLEGRDVMGAAKTGSGKTLAFLIPAI 156

Query: 61  TILEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L       R    +I + PTRELA Q  +  ++  K ++ T+  +IGG     +  +L
Sbjct: 157 ELLYNLHFSPRNGTGVIVVCPTRELAIQTHNVAKELMKYHSQTLGYVIGGNGRRTEADQL 216

Query: 120 ERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +G ++L+ TPGR +    N    +   ++ L+IDEADR+L+  F   ++ I   +P  R
Sbjct: 217 AKGVNLLVATPGRLLDHLQNTKGFIYKRLKCLIIDEADRILEQNFEEDMKQIFKRLPQNR 276

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC------FVATYAQYSKKC 232
           QT+LFSAT T E++  ++   +  +  +      + +  +                S K 
Sbjct: 277 QTVLFSATQTKEVEDFAKLSFEKNEERKEKPVYISVDDGKSNATVEGLQQGYCVIPSDKR 336

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L+      +   K  ++F +   +V      L         IHG   Q+ R     NF 
Sbjct: 337 FLVLYAFLKKKQSKKVMVFFSSCSSVKFHAELLNFLQIECEDIHGKQKQQKRTTTFFNFC 396

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAK 351
           +    +++ +++AARGLDIPDV ++  +D P+  ++YIHR+GRT R  +  G A   +  
Sbjct: 397 KADKGILLCTNVAARGLDIPDVDYIVQYDPPDEPKDYIHRVGRTARGEKGKGSALLFLLP 456

Query: 352 EDIKHIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
           +++K +  ++  K+   + ++ N ++ +L   LE I
Sbjct: 457 QELKFLIYLKAAKISLTEYEFNNKNVPNLQSHLENI 492


>gi|315046986|ref|XP_003172868.1| ATP-dependent RNA helicase DED1 [Arthroderma gypseum CBS 118893]
 gi|311343254|gb|EFR02457.1| ATP-dependent RNA helicase DED1 [Arthroderma gypseum CBS 118893]
          Length = 596

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 104/406 (25%), Positives = 162/406 (39%), Gaps = 26/406 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + GL P ++  +   GYV PTP+Q   IP VL  HD+  +AQTG+GKTA+F++P+L+
Sbjct: 128 SFDEAGLHPIMLNNIKLCGYVVPTPVQAYCIPAVLTGHDLIAVAQTGSGKTAAFLIPVLS 187

Query: 62  ILEKGRARVRMPRTL-------------------ILEPTRELAAQVADNFEKYGKNYNLT 102
            L     ++  PR                     I+ PTRELA Q+ D   +      L 
Sbjct: 188 RLMGKAKKLAAPRPDLGNGFNESLDAVRAEPLVLIVVPTRELATQIFDEARRLCYRSMLR 247

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
             ++ GG P   Q  +L++G D+LI TPGR++D  ++  +L        I +    L   
Sbjct: 248 PCVIYGGGPSRDQRIELQKGCDILIATPGRLIDFMDKPHILSLCRVRYTIIDEADELLKS 307

Query: 163 FIPYIQNIT---SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
                         +           + T                           T  +
Sbjct: 308 DWETEFTKILAGGDINEDADHRYMMFSATFNKGCRQVARKFLASDYVRIRIGRVGSTHLN 367

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                              L         I+F N K     +   L   G    +IH + 
Sbjct: 368 VTQQLVWAEENMKKKCLYDLLMAMPPSRTIVFVNNKTQADLIDDFLFNMGLPSTSIHSDR 427

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPN----RAENYIHRIGR 335
            QR R   +  FK     +++A+ ++ARGLDI +V HV N+D+P+      + YIHRIGR
Sbjct: 428 TQREREDAIRAFKTAKSPILIATAISARGLDIKNVMHVVNYDLPSVQHGGIDEYIHRIGR 487

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           T R G  G A +    ++      + K++ +    +   L S +PP
Sbjct: 488 TARIGNPGLATSFYNDKNSDIASDLVKILIESKQVVPDFLQSESPP 533


>gi|319778596|ref|YP_004129509.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
 gi|317108620|gb|ADU91366.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
          Length = 581

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 130/393 (33%), Positives = 211/393 (53%), Gaps = 27/393 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+   ++ ++    +  PT +Q+K+IPL L+  D+   AQTG+GKTA+F+LP + 
Sbjct: 5   KFADLGIEQTLLKSLERIDFRNPTEVQVKSIPLALKGKDLIVSAQTGSGKTAAFMLPSIQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK------------------------ 97
            L         P  +  + +++   +   N  KYG                         
Sbjct: 65  QLLHELETRPAPEQIASKSSKQRKRRSEANPPKYGVQILVLTPTRELAMQVSDATKEFIY 124

Query: 98  -NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEAD 156
               + +A L+GG+ +  Q   L R  ++++ TPGR+LDH   G++ + N++IL++DEAD
Sbjct: 125 GFKGVHIATLVGGMAYGPQINSLSREVEIVVATPGRLLDHIKAGRVNLRNLKILILDEAD 184

Query: 157 RMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
           RMLDMGFI  I N+ +  P  RQTLLFSAT    + K++ + L +P+RI V+  +   + 
Sbjct: 185 RMLDMGFIHDINNVVAETPDDRQTLLFSATFEGNVVKLARDMLTDPERIIVSDHTDKHQN 244

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
           IE           K      + L      +  I+F   K+   +L   L+        +H
Sbjct: 245 IEQYLFYADTVGHKFKL--LEALLKDPEAEQVIVFTKTKRGATDLAGRLKDIDIKASELH 302

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G+++Q  R + +    +G I+++VA+D+AARG+DI  + HV N+D+P +AE+Y+HRIGRT
Sbjct: 303 GDMNQGQRNRTIQGLHKGKIKVLVATDVAARGIDIQGISHVINYDLPMQAEDYVHRIGRT 362

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
           GRAGR G+A+TL    + + +  IE  I ++ D
Sbjct: 363 GRAGRDGRAYTLALLSERRGVRFIENYINREFD 395


>gi|229085106|ref|ZP_04217357.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-44]
 gi|228698231|gb|EEL50965.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-44]
          Length = 389

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 101/348 (29%), Positives = 183/348 (52%), Gaps = 8/348 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P +  A   AG+ + T IQ + IP +L+  DV   + TGTGKT +++LP+L  +      
Sbjct: 7   PFLQQAWEKAGFKEFTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI---NPE 63

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           V+ P+ +IL PTREL  Q+ +  +K+    +++ A LIGG   + Q +KL++   V++ +
Sbjct: 64  VKQPQVVILAPTRELVMQIHEEVQKFTAGTDISGASLIGGADIKRQVEKLKKHPKVIVGS 123

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGRIL+     KL M+ ++ +V DE D+++    +  + ++       RQ + FSATMT 
Sbjct: 124 PGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMVDAVHDVIKATMRDRQLVFFSATMTK 183

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
           + ++V+ +F   P+ + V    + +         TY    ++                 +
Sbjct: 184 DAEEVARDFAVEPQLVRVKRTETKSLVE-----HTYIVCERREKNDYVRRIMHIGNVKAV 238

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
            F N    +  +   L  +     A+H    ++ R   +  F++G +++++A+D+AARGL
Sbjct: 239 AFLNDPYRLDEIAEKLRYRKMKASALHAEASKQEREATMRAFRQGKLEILLATDIAARGL 298

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           DI D+ HV + ++P+  + YIHR GRTGR G+ G   +LV  ++ + +
Sbjct: 299 DIDDLTHVIHLELPDTLDQYIHRSGRTGRMGKEGTVVSLVTPQEERKL 346


>gi|156545225|ref|XP_001606735.1| PREDICTED: similar to ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 428

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 86/376 (22%), Positives = 161/376 (42%), Gaps = 3/376 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L P+++ A+ D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L 
Sbjct: 47  SFRDFLLKPELLRAISDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAIFVLATLQ 106

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            LE    +V               ++  + F KY     ++V      I  + +  K   
Sbjct: 107 QLELAENKVLGLVMCHTRELAFQISKEYERFSKYLPKVKVSVFFGGMPIQKDKEVLKNNC 166

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+            +   L +    ++ +    +  +     +Q I    P  +Q +
Sbjct: 167 PHIVVGTPGRISALVKGKKLSLQHLKFFILDECDKMLEQLDMRQDVQYIFRSTPHGKQVM 226

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT++ E++ V + F+Q+P  + V+  +               +   +       L  
Sbjct: 227 MFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYLKLKEK--EKNKKLFELLD 284

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      +IF    +   +L   L ++ F    IH  + Q  R+    +FK+   +++VA
Sbjct: 285 ELEFNQVVIFVKSVQRCNSLTQLLTEENFPTIGIHKGMTQEERLTKYQSFKDFQQRILVA 344

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL-VAKEDIKHIDAI 360
           ++L  RGLDI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T    + D K ++ +
Sbjct: 345 TNLFGRGLDIERVNIVFNYDMPENSDTYLHRVARAGRFGTKGLAITFDCDEADDKILNDV 404

Query: 361 EKLIEKKVDWLNGDLS 376
           ++  +  +  L  ++ 
Sbjct: 405 QERFDVNIAALPDEID 420


>gi|253745237|gb|EET01285.1| ATP-dependent RNA helicase [Giardia intestinalis ATCC 50581]
          Length = 450

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 119/415 (28%), Positives = 202/415 (48%), Gaps = 21/415 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH--DVCGIAQTGTGKTASFVLP 58
           M F DLG+ P+++ A+   G+V+PT IQ + + ++      DV G+A+TG+GKT +F +P
Sbjct: 1   MLFRDLGVCPELLDALERIGWVEPTAIQKEMLTVISTNKICDVVGVAETGSGKTGAFAIP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNK 117
            L  L +    V+   T++L PTRELA Q    F   GK++ L   L+IGG+   + +  
Sbjct: 61  ALQDLLERGNNVKGVHTVVLSPTRELAVQTFSVFRDLGKDFGLRTGLVIGGVDLMQQRKI 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             ++   ++           +     + +I  L+IDEAD+ML+      + ++    P  
Sbjct: 121 LAQQPHALICTPGRLADHLASTEGFSLKSIRFLIIDEADKMLEQDMGRAVLDLAKACPQR 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC---------------FV 222
           R+T LFSAT    +Q +        + + +       +  E                   
Sbjct: 181 RRTFLFSATFPSAVQALQNECTDRSRLVHIRVGVLAKDAPEVDGSASTQLAVVDNELLSH 240

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                   +  L   +L +       I+F  +   V  L   L   GF V  +HG++ Q 
Sbjct: 241 KMVVLPHAEKQLGLVVLLNNHATCQIIVFATKISTVTKLALMLTTLGFEVGVVHGSMAQD 300

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R++ L+ F++G  ++++ASD+A RG+DIP+V  V N+D+P  + +Y+HR GRT RAGR 
Sbjct: 301 KRLEELNRFRQGEHKILLASDVAGRGIDIPNVDLVINYDLPVASRDYVHRAGRTARAGRR 360

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDL---SSLNPPLEKIDIAQHNHAR 394
           G A T+V + D+ +   IE ++  +++  N D    + L P +E+   A    AR
Sbjct: 361 GTALTIVTQYDVVNFKRIEAMLGIRMEPYNPDFGEAAGLRPQVEEAIRAAERTAR 415


>gi|311276168|ref|XP_003135076.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Sus
           scrofa]
          Length = 646

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 129/396 (32%), Positives = 207/396 (52%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 165 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 224

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 225 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 284

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 285 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 344

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 345 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 404

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 405 WVEESDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 462

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 463 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 522

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   + +      +  L+ +    +   L ++
Sbjct: 523 GLATSFFNERNANITKDLLDLLVEAKQEVPSWLENM 558


>gi|311276166|ref|XP_003135075.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 1 [Sus
           scrofa]
          Length = 662

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 129/396 (32%), Positives = 207/396 (52%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 241 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 300

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 301 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 360

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 361 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 420

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 421 WVEESDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   + +      +  L+ +    +   L ++
Sbjct: 539 GLATSFFNERNANITKDLLDLLVEAKQEVPSWLENM 574


>gi|291544767|emb|CBL17876.1| Superfamily II DNA and RNA helicases [Ruminococcus sp. 18P13]
          Length = 555

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 132/352 (37%), Positives = 206/352 (58%), Gaps = 7/352 (1%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
            G+ + T IQ K+IPL++Q  D+ G + TGTGKTA+F +P +  + +   R       IL
Sbjct: 1   MGFTEMTEIQEKSIPLMMQGIDLIGRSNTGTGKTAAFGIPAVESISQEDPRSVQVL--IL 58

Query: 79  EPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137
            PTRELA Q  +  +K  +         + GG   + Q   L+RGA++++ TPGR++DH 
Sbjct: 59  CPTRELAMQACEELKKLSRFMPWVRPCAVYGGASMDRQIGDLKRGANIVVGTPGRVMDHM 118

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
           NR  L + N++ +++DEAD ML+MGF   I+ I S VP  RQT+LFSATM  E+  +++ 
Sbjct: 119 NRRTLKLQNLKTVILDEADEMLNMGFREDIETILSGVPEERQTVLFSATMPPEIMAITKQ 178

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
           F ++P  I++     T +TIE  +  T            +LL      K+ ++FCN K+ 
Sbjct: 179 FQKDPTVIKIAAKHRTVDTIEQYYYETAMGRKTDA---LRLLLLAYEPKSAMVFCNTKRT 235

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
           V  L  +L  +G     +HG++ Q  R ++++ FK G I ++VA+D+AARG+D+  +  V
Sbjct: 236 VDELTEALCDKGIQAAGLHGDMKQMQRTQVMNAFKSGRIGVLVATDVAARGIDVNGIDLV 295

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDAIEKLIEKKV 368
           FN+D+P   E YIHRIGRTGRAG+ G A TLV+ +  +  +  I K  + ++
Sbjct: 296 FNYDLPQDNEYYIHRIGRTGRAGKSGTALTLVSGRRQVFALRDIAKYTKAEI 347


>gi|62898085|dbj|BAD96982.1| DDX19-like protein variant [Homo sapiens]
          Length = 478

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 177/382 (46%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 92  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 151

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      R P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 152 LSRVEPSD---RYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 208

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 209 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 268

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K        L
Sbjct: 269 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK--FQALCNL 326

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 327 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 386

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 387 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 446

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK+  L+ D
Sbjct: 447 SMNILNRIQEHFNKKIGRLDTD 468


>gi|52842336|ref|YP_096135.1| ATP-dependent RNA helicase DbpA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629447|gb|AAU28188.1| ATP dependent RNA helicase DbpA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 468

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 141/407 (34%), Positives = 225/407 (55%), Gaps = 16/407 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L  +++ ++  + Y   TPIQ++++P++L+  D+   A+TG+GKTA+F L +L
Sbjct: 11  LSFSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDMIAQAKTGSGKTAAFALCLL 70

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL-IGGIPFEAQNKKL 119
             L+     V+    L+L PTRELA QV+    +          +   GGIP + Q   L
Sbjct: 71  NNLKISFFVVQ---ALVLCPTRELAEQVSQAIRRLACLMPNVKIINLSGGIPMQPQLDSL 127

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA +++ TPGRIL H     L ++ ++ LV+DEADRMLDMGF   I+NI S+ P  RQ
Sbjct: 128 RHGAHIIVGTPGRILKHLKNASLDLSQVKALVLDEADRMLDMGFFDDIKNIISVCPKQRQ 187

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +E++++S+ F+++PK + V TP    +  +H +  +          L + L
Sbjct: 188 TLLFSATYPEEIKRLSKQFMKDPKEVHVVTPPEEIDIEQHFYEVSRHAQK---FPLLKSL 244

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + +IFCN K+  + +   L  +GFS  A++G+++Q  R   +  F   +  ++
Sbjct: 245 LLHYQPVSVLIFCNTKQQTIEVTDQLINEGFSAIALNGDMEQIERDLAVLRFANQSCSIL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI ++  V NFD+    + +IHRIGRTGRAG  G A ++V   D + I A
Sbjct: 305 VATDVAARGLDIKELSAVINFDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPADAQRICA 364

Query: 360 IEKLIEKKVDWLNGDL------SSLNPPLEKIDIAQHNHARKNNPIP 400
           IE      + W N +       + L P +  + IA     +K+   P
Sbjct: 365 IEDNYPLPIHWGNINELENHNTARLVPEMVTLCIA---SGKKDKIRP 408


>gi|320581153|gb|EFW95374.1| ATP-dependent RNA helicase [Pichia angusta DL-1]
          Length = 747

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 154/478 (32%), Positives = 250/478 (52%), Gaps = 37/478 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L LS  ++ A+   GY KP+ IQ  +IP+ L   D+   A TG+GKTA++++P++ 
Sbjct: 241 SFQSLKLSRPILKALSALGYSKPSAIQSASIPIALLGKDIVAGAVTGSGKTAAYMIPIIE 300

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L    +++   R ++L PTRELA QVAD  +K G+  N  T  L +GG+    Q ++L+
Sbjct: 301 RLLYKPSKMPSTRVIVLAPTRELAIQVADVGKKIGQFVNGLTFGLAVGGLNLRQQEQELK 360

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNI-EILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  D++I TPGR++DH            E+LV DEADRML+ GF   +  I SL+P  RQ
Sbjct: 361 KRPDIVIATPGRLIDHIRNSVSFNVESVEVLVFDEADRMLEEGFQKELTEILSLLPLNRQ 420

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQL 238
           T+LFSATM   ++ + +  L+ P R+ +  P  + +E ++        + SK   L   L
Sbjct: 421 TMLFSATMNSRIKSLIQLSLKKPVRVMIGAPKAAASELVQEFVRIRKRESSKPALLFNIL 480

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +        I+F ++K+    L  SL   G  V  +HG++ Q  R+K + +FK  T+ +
Sbjct: 481 SEMDGLHSRVIVFVSRKEMAHRLRISLGLLGLKVSELHGSLTQEQRLKAIVDFKNLTVPI 540

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKH 356
           ++ +DLAARGLDIP +  V NFD+P   E Y+HR+GRT RAGR G + + V  + +D   
Sbjct: 541 LICTDLAARGLDIPKIELVINFDMPKTYEIYLHRVGRTARAGRKGLSISFVGESSQDRNI 600

Query: 357 ID-AIE--------KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           +  AI+        K I + V+W N         +EKI    H   ++   +       +
Sbjct: 601 VKEAIKQVETENAGKAIGRNVNWEN---------VEKI----HRILQEKESVIFDVLNEE 647

Query: 408 RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDKL 465
           +++K     K+   +K+ E +   +Q+I+     +         FM  + + K +D+L
Sbjct: 648 KQEKELL--KAEQEIKKGENMLNFEQEIKSRPKRTW--------FMTSQQKKKESDRL 695


>gi|306825593|ref|ZP_07458932.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304431954|gb|EFM34931.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 447

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 130/452 (28%), Positives = 203/452 (44%), Gaps = 43/452 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKKFQFKNYIAEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +   +  +
Sbjct: 61  QQLDETSDSVQAV---ITAPSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +I V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKIFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +          
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYEL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 237 --TQLMQPYLAMIFVNTKTRADELYAYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDI 354

Query: 358 DAIEKL-------------------------IEKKVDWLNGDLSSL---------NPPLE 383
             +EKL                          EKK D L+ ++  L             +
Sbjct: 355 RELEKLGIKFTPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKKKKVKPGYKK 414

Query: 384 KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           KI  A     RK      ++ G   RK    +
Sbjct: 415 KIQWAVDEKRRKTKRAENRARGRAERKAKRQT 446


>gi|168490848|ref|ZP_02714991.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC0288-04]
 gi|183574625|gb|EDT95153.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC0288-04]
          Length = 445

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 129/450 (28%), Positives = 201/450 (44%), Gaps = 41/450 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +   +  +
Sbjct: 61  QQLDEASDSVQAV---ITAPSRELATQIYQVSRQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGCLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T             
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 237 --TQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL-------------------------IEKKVDWLNGDLSSL-------NPPLEKI 385
             +EKL                          EKK D L+ ++  L           +KI
Sbjct: 355 RELEKLGIKFSPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKKVKPGYKKKI 414

Query: 386 DIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
             A     RK      ++ G   RK    +
Sbjct: 415 QWAVDEKRRKTKRAENRARGRAERKAKRQT 444


>gi|331646674|ref|ZP_08347777.1| ATP-independent RNA helicase DbpA [Escherichia coli M605]
 gi|330911207|gb|EGH39717.1| ATP-dependent RNA helicase DbpA [Escherichia coli AA86]
 gi|331045426|gb|EGI17553.1| ATP-independent RNA helicase DbpA [Escherichia coli M605]
          Length = 457

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 208/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+  ++C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W     +S   PLE
Sbjct: 357 SDMLQIKLNWQTPPANSSIVPLE 379


>gi|261339970|ref|ZP_05967828.1| ATP-independent RNA helicase DbpA [Enterobacter cancerogenus ATCC
           35316]
 gi|288317887|gb|EFC56825.1| ATP-independent RNA helicase DbpA [Enterobacter cancerogenus ATCC
           35316]
          Length = 457

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 134/383 (34%), Positives = 214/383 (55%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY+  TP+Q   +P +L+  DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPAAQLENLNELGYLTMTPVQAAALPAILEGRDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++ G  + +    L+L PTRELA QVA    +  +    T  L + G  PF AQ   L+
Sbjct: 64  RIDAGLFQTQS---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ ++ LV+DEADRMLDMGF   I  +    P  RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  +S      P  IE++T     + +       +    K    L Q + 
Sbjct: 181 LLFSATWPEAIAAISGRVQNAPLTIEIDTV----DALPAIEQQFFEVSQKGKIALLQKVL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN KK+  ++C +L   G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SQHKPASCVVFCNTKKDCQSVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + +
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIL 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
            ++++ K++W+N   S    PL+
Sbjct: 357 SEMLQLKLNWVNAPASVSIVPLD 379


>gi|161613874|ref|YP_001587839.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168230079|ref|ZP_02655137.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194471340|ref|ZP_03077324.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|161363238|gb|ABX67006.1| hypothetical protein SPAB_01610 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194457704|gb|EDX46543.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205335550|gb|EDZ22314.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 457

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 139/401 (34%), Positives = 222/401 (55%), Gaps = 10/401 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF AQ   L+
Sbjct: 64  RIDVTLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPETRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  +S    Q P RIE++T     + +       +   + +   L Q L 
Sbjct: 181 LLFSATWPEAIAAISGRVQQQPIRIEIDTV----DALPAIEQQFFETSAHEKISLLQTLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN KK+   +C +L   G S  A+HG+++QR R + L  F  G+ +++V
Sbjct: 237 SQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +  A E+ +  + +
Sbjct: 297 ATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANIL 356

Query: 361 EKLIEKKVDWLNGDL-SSLNPPLEKIDIAQHNHARKNNPIP 400
            ++++ K++WLN     SL P   ++     +  +K    P
Sbjct: 357 SEMLQLKLNWLNAPARQSLLPLAAEMATLCIDGGKKAKMRP 397


>gi|74691634|sp|Q74Z73|HAS1_ASHGO RecName: Full=ATP-dependent RNA helicase HAS1
          Length = 504

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 111/391 (28%), Positives = 192/391 (49%), Gaps = 8/391 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS + + A+   G+ K T +Q +TIP ++   DV G A+TG+GKT +F+LP + 
Sbjct: 40  KFDELNLSSQTLKAIGKMGFTKMTQVQARTIPPLMAGRDVLGAAKTGSGKTLAFLLPAIE 99

Query: 62  ILEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   + + R    +I + PTRELA Q+     +  + ++ T  ++IGG     + +KL 
Sbjct: 100 MLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLA 159

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G ++LI TPGR +    N    +  N++ LVIDEADR+L++GF   ++ I  ++P   +
Sbjct: 160 KGVNLLIATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEDEMKQIIKILPNEDR 219

Query: 180 TLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             + FSAT T +++ ++   L+               T +          S K  LL   
Sbjct: 220 QSMLFSATQTTKVEDLARISLRPGPLFINVDSEKETSTADGLEQGYVVCDSDKRFLLLFT 279

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +   K  I+F +   +V      L      V  +HG   Q+ R      F      +
Sbjct: 280 FLKKFQNKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGI 339

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHI 357
           +V +D+AARGLDIP V  +  FD P+   +YIHR+GRT +  +  GK+   +   ++  +
Sbjct: 340 LVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTAKGTKGKGKSLMFLTPHELGFL 399

Query: 358 DAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
             + K  +  ++        ++++   LEK+
Sbjct: 400 RYL-KAAKVPLNEYEFPANKIANVQSQLEKL 429


>gi|90408914|ref|ZP_01217050.1| putative ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
 gi|90309973|gb|EAS38122.1| putative ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
          Length = 431

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 140/418 (33%), Positives = 227/418 (54%), Gaps = 27/418 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGL   ++  + +  Y +PTPIQ + IP +L+ HD+   A TG+GKTA+F LP+L 
Sbjct: 9   NFTELGLIQPLLARLTELEYQQPTPIQAQAIPSILRGHDLIAGANTGSGKTATFALPLLQ 68

Query: 62  ILEKGRA----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGG 109
            + + +           +     +LIL PTRELA QVAD+ + Y  ++N  +    + GG
Sbjct: 69  HIFEQQQAQKNVSNSREKGNYVTSLILVPTRELAKQVADSIKSYAVHFNGAIKTVAVFGG 128

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +    Q   L  G D+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  
Sbjct: 129 VSANTQMLALRGGTDILVATPGRLLDLISSNAIKLDRVQCLVLDEADRMLSLGFTDELSA 188

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           + +L+P  +QTLLFSAT  +++Q +++  L  P  I++ +  ++        V    + +
Sbjct: 189 LLALLPKKKQTLLFSATFPEQVQALTQELLNEPVEIQLQSADASTLVQRVFTVNKGQKTA 248

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
               L++         +  +IF N K+N  +L   L K+G +    HG   Q +R ++L 
Sbjct: 249 LLAHLIKHHQW-----RQALIFVNAKRNCDHLAEKLSKRGITAEVFHGAKGQGARDRVLE 303

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +FK G I +++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G A +L+
Sbjct: 304 SFKAGEINVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLI 363

Query: 350 AKEDIKHIDAIEKLIEKKVDW---------LNGDLSSLNPPLEKIDIAQHNHARKNNP 398
             ED  H   IEK  + +++           N  L +   P+ K + +     RKN P
Sbjct: 364 DHEDYHHFKIIEKKNKIRLEREQVAGFELTENDALITTEKPMAKPEGS-GKKKRKNKP 420


>gi|24373075|ref|NP_717118.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24347255|gb|AAN54562.1|AE015596_2 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 456

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 144/458 (31%), Positives = 228/458 (49%), Gaps = 25/458 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY + T +Q + IPL L   D+   AQTGTGKTA+F LP+L
Sbjct: 1   MKFDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L    A   + R L++ PTRELA QV  N +KY +   L    + GG     Q K +E
Sbjct: 61  EQLAAKPADKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+ D   +  L ++++  LVIDEADRMLD+GF+  I+ +  L+    QT
Sbjct: 121 QGVDILVATPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT +D +++                  +   T        Y    ++ A L   L 
Sbjct: 181 MLFSATYSDAVKQ----LSHKMLNQPQWVNVAENTTASTVEQLVYRVDKRRKAELLSELV 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  ++F + K+   +L   L   G S    HG+  Q +R ++L +FK G ++++V
Sbjct: 237 GRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N ++P  AE+Y+HRIGRTGRAG  G+A + V+  D + +  I
Sbjct: 297 ATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEI 356

Query: 361 EKLIEKKVDW-----------LNGDLSSLN----------PPLEKIDIAQHNHARKNNPI 399
           E LI +K+             L      L              +   I + +   K++  
Sbjct: 357 EALIGEKLPVTVQPGYEEGTPLPARYRDLPVVTTKTKWSYKAPKDRTIGKSSAGGKSSES 416

Query: 400 PQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQE 437
             ++     R+  YS  K+ +   + ++         +
Sbjct: 417 QARARKSPSREGKYSKDKAKVSPSQPQRSGGKPHSGHK 454


>gi|320547900|ref|ZP_08042183.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           equinus ATCC 9812]
 gi|320447440|gb|EFW88200.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           equinus ATCC 9812]
          Length = 447

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 115/366 (31%), Positives = 176/366 (48%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D    P +  A+ +  +  PT +Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFNDFNFKPYIREALAELKFKNPTEVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNK 117
             L++    V++    I  P+RELA Q+    ++  +     + +              K
Sbjct: 61  EKLDENNNNVQVV---ITAPSRELATQIYQATKQIAEKSETEIRVANYVGGTDKLRQIEK 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L +      V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LKSAQPHIVIGTPGRIYDLVKSGDLEIYKAHTFVVDEADMTLDMGFLDTVDKIAGTLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEKIKTTTVIADTI---DNWLVSTKGRDKNAQIL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K+    L   L   G  V  IHG+I  R R + ++  K+ + +
Sbjct: 235 EITKAINPYLAMIFVNTKERADELHSYLASNGLKVAKIHGDIPPRERKRTMNQIKKLSYE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G +G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLNGIAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EKL
Sbjct: 355 RELEKL 360


>gi|227524339|ref|ZP_03954388.1| ATP-dependent RNA helicase [Lactobacillus hilgardii ATCC 8290]
 gi|227088570|gb|EEI23882.1| ATP-dependent RNA helicase [Lactobacillus hilgardii ATCC 8290]
          Length = 453

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 123/455 (27%), Positives = 209/455 (45%), Gaps = 21/455 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++  L P ++ A+ D  + KPTP+Q K IP++LQ  DV G + TG+GKT +F+LP+  
Sbjct: 3   QFSEFHLKPFILNALDDLKFTKPTPVQEKLIPVILQHRDVVGQSATGSGKTHAFLLPIFN 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++    V+   T             A    K+  +     + + G      ++K  + 
Sbjct: 63  DIDRKIDEVQAVITTPSRELAYQILDAAKQLAKFSPDPISIGSYVGGTDKKRQEDKLKKE 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+ D    G L ++    LVIDEAD  LDMGF+  + +I +      Q +
Sbjct: 123 QPQLIVGTPGRVWDLIKNGGLDVHTASKLVIDEADMTLDMGFLDVVDHIAASFGKHVQMM 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  ++    + ++ NP   E+   S  + TI++  ++T  Q   +         +
Sbjct: 183 VFSATIPQKITVFLKKYMDNPVIEEIPVSSIISPTIDNWLISTKGQDKNQLIYHLL---T 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  +IF N +K V  L   L  QG  V  +HG +  R R +I+   K    Q +VA
Sbjct: 240 IGEPYLVLIFANTRKRVEELTEYLRGQGLKVAMVHGGVKPRERKQIMKRIKNLDFQFVVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVP-NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +DLAARG+DI  V  V N D+P    E +IHR+GRTGR G  G + TL + ++ K ++  
Sbjct: 300 TDLAARGIDIEGVSQVINDDIPTEDLEFFIHRVGRTGRNGMSGTSITLYSPDEEKEVEE- 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI-------------PQKSTGFD 407
             L    + +    L + +  ++  D  +    RK                  +   G+ 
Sbjct: 359 --LEGMGIHFKPKALKN-HEIVDTYDRRRRQTHRKKREKLDPTMIGLIKKKKKKIKPGYK 415

Query: 408 RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADS 442
           R+ K   S+K  +  + S++     +  Q   +  
Sbjct: 416 RQIKMSISRKEEMDRRVSKREESRAKRKQRKQSSK 450


>gi|227513124|ref|ZP_03943173.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
 gi|227083699|gb|EEI19011.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
          Length = 453

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 123/455 (27%), Positives = 208/455 (45%), Gaps = 21/455 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++  L P ++ A+ D  + KPTP+Q K IP++LQ  DV G + TG+GKT +F+LP+  
Sbjct: 3   QFSEFHLKPFILNALDDLKFTKPTPVQEKLIPVILQHRDVVGQSATGSGKTHAFLLPIFN 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+   T             A    K+  +     + + G      ++K  + 
Sbjct: 63  DIDPKIDEVQAVITTPSRELAYQILDAAKQLAKFSPDPISIGSYVGGTDKKRQEDKLKKE 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+ D    G L ++    LVIDEAD  LDMGF+  + +I +      Q +
Sbjct: 123 QPQLIVGTPGRVWDLIKNGGLDVHTASKLVIDEADMTLDMGFLDVVDHIAASFGKHVQMM 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  ++    + ++ NP   E+   S  + TI++  ++T  Q   +         +
Sbjct: 183 VFSATIPQKITVFLKKYMDNPVIEEIPVSSIISPTIDNWLISTKGQDKNQLIYHLL---T 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  +IF N +K V  L   L  QG  V  +HG +  R R +I+   K    Q +VA
Sbjct: 240 IGEPYLVLIFANTRKRVEELTEYLRGQGLKVAMVHGGVKPRERKQIMKRIKNLDFQFVVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVP-NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +DLAARG+DI  V  V N D+P    E +IHR+GRTGR G  G + TL + ++ K ++  
Sbjct: 300 TDLAARGIDIEGVSQVINDDIPTEDLEFFIHRVGRTGRNGMSGTSITLYSPDEEKEVEE- 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI-------------PQKSTGFD 407
             L    + +    L + +  ++  D  +    RK                  +   G+ 
Sbjct: 359 --LEGMGIHFKPKALKN-HEIVDTYDRKRRQTHRKKREKLDPTMIGLIKKKKKKIKPGYK 415

Query: 408 RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADS 442
           R+ K   S+K  +  + S++     +  Q   +  
Sbjct: 416 RQIKMSISRKEEMDRRVSKREESRAKRKQRKQSSK 450


>gi|119491751|ref|XP_001263370.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
 gi|134034081|sp|A1D6X9|DBP8_NEOFI RecName: Full=ATP-dependent RNA helicase dbp8
 gi|119411530|gb|EAW21473.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
          Length = 526

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 117/431 (27%), Positives = 192/431 (44%), Gaps = 19/431 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L ++P +V ++      KPT IQ   IP +L+  D  G ++TG+GKT +F +PML 
Sbjct: 97  SFAALNVAPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFSVPMLQ 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +          ++L PTRELA Q+ +  +      ++   L+ GG     Q   L  
Sbjct: 157 KWAE---DPFGIFGVVLTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRPQAIALAG 213

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM-------GFIPYIQNITSLV 174
              V+I TPGR+ DH              V        D          +P ++   S +
Sbjct: 214 RPHVVIATPGRLADHIKSSGEDTVCGLKRVRMVVLDEADRLLASGPGSMLPDVETCLSAL 273

Query: 175 PFTRQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           P + +     F+AT+T E++ +        K     T  ST                   
Sbjct: 274 PPSSERQTLLFTATVTPEVRALKNMPRSANKPPVFVTEISTENQGSIPPTLKQTYLKVPL 333

Query: 233 ALLQQLLQ-----SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
              +  L        +  +  IIFCN  K    L   L +    V ++H  + Q  R   
Sbjct: 334 THREAFLHVLLSTEDNASRPAIIFCNHTKTADLLERMLRRLTHRVTSLHSLLPQSERNAN 393

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L+ F+    +++VA+D+A+RGLDIP V  V N+DVP   ++Y+HR+GRT RAGR G+A T
Sbjct: 394 LARFRASAARILVATDVASRGLDIPTVSLVINYDVPRNPDDYVHRVGRTARAGRSGEAIT 453

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           LV + D++ + AIE+ + ++++  + +  S+   L +  + +     K   + +   G D
Sbjct: 454 LVGQRDVQLVLAIEERVGRQMEEWSEEGVSIEGRLVRTGVLKEVGEAKREAMGEIDEGRD 513

Query: 408 --RRKKNYSSQ 416
              RK+N   +
Sbjct: 514 VLGRKRNKLKK 524


>gi|85084455|ref|XP_957309.1| hypothetical protein NCU06418 [Neurospora crassa OR74A]
 gi|74654303|sp|Q7RYZ7|DBP8_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-8
 gi|28918399|gb|EAA28073.1| hypothetical protein NCU06418 [Neurospora crassa OR74A]
          Length = 626

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 114/433 (26%), Positives = 193/433 (44%), Gaps = 19/433 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L + P +V ++ +    +PT IQ   IP +L+  D  G ++TG+GKT +F +P+L 
Sbjct: 196 TFDALNVRPWLVQSLANMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQ 255

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                 + +      IL PTRELA Q+ +      + + L   L+ GG     Q   L +
Sbjct: 256 QWAANPSAIFGV---ILTPTRELALQIMEQVIALSQPHVLKAVLITGGADMRKQAIDLAK 312

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILV--------IDEADRMLDMGFIPYIQNITSL 173
              ++I TPGR+ DH              V                    +P ++   S+
Sbjct: 313 RPHLVIATPGRLADHIRTSGEDTICGLRRVKFIVLDEADRLLANSGHGSMLPDVEECFSV 372

Query: 174 VPFTRQTLL--FSATMTDELQ----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           +P   +     F+ATMT E++    +            EV+T                  
Sbjct: 373 LPPPSERQTLLFTATMTPEVKALSERPPIPGRAPVFVCEVDTQRLAIPATLRQMHLQVPV 432

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             ++  L   LL  Q+  K+ IIFCN+      L H L      V ++H  + Q  R+  
Sbjct: 433 THREHYLHMFLLTPQNVDKSVIIFCNRTSTADFLHHLLRLLDHRVTSLHSKLPQSQRIDN 492

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L  F+    +++VA+D+AARGLDIP+V  V N+D+P   ++YIHR+GRT RAGR G A T
Sbjct: 493 LGRFRASAARILVATDVAARGLDIPEVKIVINYDIPRDPDDYIHRVGRTARAGRKGDAVT 552

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN--PIPQKSTG 405
            V + D+  + AIE+ + ++++    +  +L   + +  +      ++     I ++   
Sbjct: 553 FVGQRDVDLVLAIEQRVGRQMEAWTEEGVNLETRVIRDALKVVGEKKREALLEIEEQKEV 612

Query: 406 FDRRKKNYSSQKS 418
             +RK+     ++
Sbjct: 613 GGKRKRGKEKLRA 625


>gi|323172286|gb|EFZ57923.1| ATP-independent RNA helicase dbpA [Escherichia coli LT-68]
          Length = 457

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 131/383 (34%), Positives = 206/383 (53%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LRFSATWPEAIAV----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W     +S   PLE
Sbjct: 357 SDMLQIKLNWQTPPANSSILPLE 379


>gi|302836427|ref|XP_002949774.1| hypothetical protein VOLCADRAFT_80795 [Volvox carteri f.
           nagariensis]
 gi|300265133|gb|EFJ49326.1| hypothetical protein VOLCADRAFT_80795 [Volvox carteri f.
           nagariensis]
          Length = 435

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 91/389 (23%), Positives = 156/389 (40%), Gaps = 16/389 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L P+++ A+ D G+  P+ +Q + IP  +  +DV   A++G GKTA FVL +L  
Sbjct: 42  FKELMLKPELLQAIADCGFEHPSEVQHECIPHAILGNDVLCQAKSGMGKTAVFVLSILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+                           F    K   +        +    +  K    
Sbjct: 102 LDPKPNECHAIILCHTRELAFQICHEFTRFSARMKGVTIGNFYGGIPVTQNKETLKKSVP 161

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+                L +    ++ +    +  +      Q I  + P  +Q ++
Sbjct: 162 NIVVGTPGRIKQLAKEGALPLKHVRFFVLDECDKMLEKLDMRADCQEIFKMTPHEKQVMM 221

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  E++ V + F+ NP+ + V+  S               +  K        L   
Sbjct: 222 FSATLNPEMRAVCKKFMTNPQEVYVDDESKLTLHGLVQHYVMLHEEEKNR--KLNDLLDA 279

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L +  F    I+G ++Q  R+K+  NFKEG  +++VA+
Sbjct: 280 LDFNQVVIFVKSVARAKMLNQLLNECNFPSVCIYGGMEQEERIKVYKNFKEGKHRILVAT 339

Query: 303 DLAARGLDIPDVGHVFNFDVPNR-------------AENYIHRIGRTGRAGRHGKAFTLV 349
           DL  RG+DI  V  V N+D+P               A+ Y+HR+GR GR G  G A T V
Sbjct: 340 DLVGRGIDIERVNIVINYDMPESDDKAKGESKHGNGADTYLHRVGRAGRFGTKGLAITFV 399

Query: 350 -AKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
            ++ED   ++A++   +  +  L   + +
Sbjct: 400 SSQEDSAVLNAVQDRFDVDIKPLPEKIDA 428


>gi|56972628|gb|AAH88581.1| ddx52-prov protein [Xenopus (Silurana) tropicalis]
          Length = 585

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 90/409 (22%), Positives = 167/409 (40%), Gaps = 7/409 (1%)

Query: 9   SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
             K++  V D G+  PTPIQ++ IP++L   ++   A TG+GKT +F +P+L  L+  + 
Sbjct: 179 HSKIIQNVKDFGFHTPTPIQMQAIPIMLHGREILASAPTGSGKTMAFSIPILAHLQCPKN 238

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
           +      +                   G  + + V         +   K  ++   ++  
Sbjct: 239 KGCRALIISPTRELANQTHRELVKLSDGIGFRIHVINKAAVAAKKFGPKSSKKIDILVTT 298

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL-----LF 183
               I         +  +    +I +    L        ++  + +     +      +F
Sbjct: 299 PNRLIYLLKQDPPGIDLSSVEWLIVDESDKLFEDGKTGFRDQLASIFVACTSHLLKRAMF 358

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT   ++++  +  L N   + +   +S  ET+E   +   ++  K  A+  + L  + 
Sbjct: 359 SATFAFDVEQWCKLHLDNVVSVSIGARNSAVETVEQSLLFVGSETGKLLAM--RDLVKKG 416

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
                ++F    +    L H L  +G +V  IH    Q+ R  ++ +F+EG I +++ + 
Sbjct: 417 FTPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNVIQSFREGKIWVLICTA 476

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           L ARG+D   V  V N+D P  A  YIHRIGRTGRAG  GKA +   ++D   + ++  +
Sbjct: 477 LLARGIDFKGVNMVINYDFPTSAVEYIHRIGRTGRAGHRGKAVSFFTEDDKPMLRSVASV 536

Query: 364 IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           I+K    +   + S      K          K + I         +KK 
Sbjct: 537 IQKAGCPIPDYIKSFRKLQSKQKKRMIKRPLKRDQIRTTPKYILEKKKK 585


>gi|158298823|ref|XP_318978.3| AGAP009863-PA [Anopheles gambiae str. PEST]
 gi|157014071|gb|EAA43551.3| AGAP009863-PA [Anopheles gambiae str. PEST]
          Length = 404

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 208/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  +GL  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F + +L 
Sbjct: 32  NFDQMGLREELLRGIYAYGFEKPSAIQQRAIVPCVKGSDVIAQAQSGTGKTATFSIAILQ 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     +   + LIL PTRELA+Q+       G          IGG       ++LE+
Sbjct: 92  QIKT---EIPDCQALILAPTRELASQIQKVVISLGDFLKAQCHACIGGTNVRDDMRRLEQ 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D  +R  L   NI++ V+DEAD ML  GF   IQ++   +P   Q +
Sbjct: 149 GCHIVVGTPGRVHDMISRNVLQPKNIKMFVLDEADEMLSRGFKDQIQDVFQKLPADVQVI 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS++F++NP +I V     T E I   +V    +  K   L       
Sbjct: 209 LLSATMPADVLEVSQHFMRNPVKILVKKEELTLEGIRQFYVDVKYEDWKIGTLCDL--YD 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   + ++ F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 267 TLSITQAVIFCNTRRKVDQLTEQMTEKTFTVSAMHGDMEQRDRDLIMKQFRTGSSRVLIT 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V ++D + +  IE
Sbjct: 327 TDLLARGIDVQQVSLVINYDLPTLRENYIHRIGRGGRFGRKGVAINFVTEQDKRVLADIE 386

Query: 362 KLIEKKVDWLNGDLSSL 378
           K     ++ +  +L+ +
Sbjct: 387 KHYNTTIEEMPANLADM 403


>gi|264680431|ref|YP_003280341.1| hypothetical protein CtCNB1_4299 [Comamonas testosteroni CNB-2]
 gi|262210947|gb|ACY35045.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 469

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 141/389 (36%), Positives = 208/389 (53%), Gaps = 14/389 (3%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           L LSP+++  +   GY + TPIQ  ++PL LQ  D+   A TG+GKTA+F LPM+  L  
Sbjct: 19  LPLSPEMLANLQQLGYAQMTPIQAASLPLTLQGKDLIAQASTGSGKTAAFGLPMVDRLNP 78

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLERGAD 124
               V+    L+L PTRELA QVA    +  +  +    + +  G+P   Q   LE GA 
Sbjct: 79  RWFAVQ---ALVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRNQIASLENGAH 135

Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184
           +++ TPGR++D   RGKL + N++ LV+DEADRMLDMGF+  I+ +    P  RQTLLFS
Sbjct: 136 IVVGTPGRVMDLMERGKLDIGNLKTLVLDEADRMLDMGFLGDIETVVRQCPADRQTLLFS 195

Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244
           AT  D +  ++  F     R       +T  +        Y   +++       L +   
Sbjct: 196 ATYPDGIASLASRF----MRDPQTVKVATQHSAGKIAQRWYEVGTREKVSTVAKLLAHFR 251

Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304
            ++ I FCN K+   ++   L+ QGFS  A+ G ++QR R ++L  F   +  ++VA+D+
Sbjct: 252 PESSIAFCNTKQQCRDVVSELQAQGFSALALFGELEQRERDEVLVQFANKSCSVLVATDV 311

Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
           AARGLDI D+  V N DV    E +IHRIGRTGR    G A  LV+ +++  +  IE+L 
Sbjct: 312 AARGLDIADLSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLVSMDEMGSVGKIEQLQ 371

Query: 365 EKKVDWLNGDL------SSLNPPLEKIDI 387
            +   +   D         L PP+  I I
Sbjct: 372 GRASQFFPVDELTPAAGGELLPPMMTIQI 400


>gi|119587817|gb|EAW67413.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6, isoform CRA_b [Homo
           sapiens]
          Length = 478

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 107/377 (28%), Positives = 191/377 (50%), Gaps = 13/377 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ K      ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 97  EFEDYCLKRELLMGIFEMGWEK-----EESIPIALSGRDILARAKNGTGKSGAYLIPLLE 151

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L+    +    + +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 152 RLDL---KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 208

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 209 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 268

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK    F+ +  +           T++           ++       L 
Sbjct: 269 LLYSATFPLSVQK----FMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLF 324

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V
Sbjct: 325 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 384

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 385 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 444

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +  ++  
Sbjct: 445 EEQLGTEIKPIPSNIDK 461


>gi|82544201|ref|YP_408148.1| ATP-dependent RNA helicase DbpA [Shigella boydii Sb227]
 gi|81245612|gb|ABB66320.1| ATP-dependent RNA helicase [Shigella boydii Sb227]
 gi|320174309|gb|EFW49464.1| ATP-dependent RNA helicase DbpA [Shigella dysenteriae CDC 74-1112]
 gi|332094952|gb|EGI99992.1| ATP-independent RNA helicase dbpA [Shigella boydii 3594-74]
          Length = 457

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 207/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAV----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W     +S   PLE
Sbjct: 357 SDMLQIKLNWQTPPANSSIVPLE 379


>gi|74312285|ref|YP_310704.1| ATP-dependent RNA helicase DbpA [Shigella sonnei Ss046]
 gi|73855762|gb|AAZ88469.1| ATP-dependent RNA helicase [Shigella sonnei Ss046]
 gi|323168225|gb|EFZ53911.1| ATP-independent RNA helicase dbpA [Shigella sonnei 53G]
          Length = 457

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 207/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAV----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W     +S   PLE
Sbjct: 357 SDMLQIKLNWQTPPANSSIVPLE 379


>gi|315125225|ref|YP_004067228.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas sp. SM9913]
 gi|315013738|gb|ADT67076.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas sp. SM9913]
          Length = 466

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 138/406 (33%), Positives = 219/406 (53%), Gaps = 19/406 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L   +V  +   GY + TP+Q +++P VL   D+   A+TG+GKTA+F L +L  
Sbjct: 10  FSSLALPSGLVDNLSTLGYTQMTPVQAQSLPPVLSGKDIIAQAKTGSGKTAAFSLGVLAK 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L   R R++   +L+L PTRELA QVA    K  +  +    L +  G+    Q   LE 
Sbjct: 70  LNVKRFRIQ---SLVLCPTRELAEQVAVEMRKLARGIHNIKILTLCGGVSIGPQIGSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  +G L ++++E LV+DEAD+MLDMGF   +  I   +P  RQTL
Sbjct: 127 GAHIIVGTPGRVDDHIRKGTLRLDDVETLVLDEADQMLDMGFQDTLDAIIECIPTNRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++ +++  L NP+ I+V       E             +K+     +LL  
Sbjct: 187 LFSATFPKSIEAIAKRVLSNPEMIKVEE---QQEKSTIKQYFYKMDNNKQRYPTLKLLLL 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T ++ ++FCN K     +C  L  +GFS  A+HG+++QR R + L +F   +  ++VA
Sbjct: 244 KFTPQSCVVFCNTKVETQQVCDDLADEGFSAVALHGDLEQRDRERTLIHFANKSASILVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V N+ + +  + ++HR+GRTGRAG+ G A ++    +   +  I 
Sbjct: 304 TDVAARGLDIDDMDMVINYHLAHDPQTHVHRVGRTGRAGKKGIACSIYGDAEQFKVAQIG 363

Query: 362 KLIEKKVDWLNGDLSSLN----PPLEK------IDIAQHNHARKNN 397
              E+  D+    + S N    PP +       ID  +    R  +
Sbjct: 364 DHYER--DFTPEPMPSYNLLDKPPYKPEMVTLMIDAGKKQKVRAGD 407


>gi|193652521|ref|XP_001942765.1| PREDICTED: ATP-dependent RNA helicase WM6-like [Acyrthosiphon
           pisum]
          Length = 423

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 91/375 (24%), Positives = 169/375 (45%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 43  FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAMLGMDILCQAKSGMGKTAVFVLSTLQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE   + V               ++  + F KY     ++V      I  +    K  + 
Sbjct: 103 LEVYESEVYALVLCHTRELAFQISKEFERFTKYLPAVKVSVFFGGVPITKDEDTLKNNKP 162

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +     +  +L N    ++ +    +  +     +Q I    PF +Q ++
Sbjct: 163 HVVVGTPGRILELIRKKKLVLNNLKHFILDECDKMLEILHMRSDVQEIFKNTPFNKQVMM 222

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ +++ V + F+Q P  + V+  +  +      +     +  K   L       +
Sbjct: 223 FSATLSKDIRPVCKKFMQQPLEVYVDDDAKLSLHGLQQYYVKLTEKEKNKKLFDL--LDE 280

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF    +  V L   L +Q F   A+HG + Q+ R+K    FK+   +++VA+
Sbjct: 281 LEFNQVIIFVKSVQRCVVLTELLNEQNFPSVAMHGGMSQQDRLKFYQEFKDFQKRILVAT 340

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  V N+D+P   + Y+HR+ R GR G  G A T + +E D K +++++
Sbjct: 341 NLFGRGMDIERVNIVINYDMPEDTDTYLHRVARAGRFGTKGLAITFICEETDAKVLNSVQ 400

Query: 362 KLIEKKVDWLNGDLS 376
              +  +  +  ++ 
Sbjct: 401 DRFDVTIGRMPNEIE 415


>gi|322495006|emb|CBZ30309.1| putative ATP-dependent RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 804

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 123/380 (32%), Positives = 199/380 (52%), Gaps = 8/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ A+L  G+  PTPIQ K IP +LQ +DV  +A+TG+GKTA+F++PML  
Sbjct: 24  FQSFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLNT 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  +++   R L+L PTREL+ Q+  N     K  +L  A L+GG   + Q + L   
Sbjct: 84  L-KAHSKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDSMDQQFELLASN 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+L       L + ++  LV+DEADR+ ++G  P I  I   +P + Q  L
Sbjct: 143 PDIVVATPGRLLHIMEEASLHLTSVRCLVLDEADRLFELGLQPQIGAIMQKLPESCQRAL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK-----CALLQQ 237
           FSATM   L + +   L NP  I +++    ++ ++                     +  
Sbjct: 203 FSATMPTVLAEFTSAGLHNPVVIRLDSEMKLSDQLKQSAFLVRNDEKVAALIVLLKRVLH 262

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + ++       +IF   K +V  L   L     S  A+HG +DQ +R   + +F +    
Sbjct: 263 VGEAAANNAQALIFVESKFHVEFLQMILTAYSISTSAVHGQMDQEARRLAVRSFAKRETS 322

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MV +D+AARGLD+P + +V NF  P   + ++HR+GR  RAGR G A++++  ED  + 
Sbjct: 323 VMVVTDVAARGLDLPLLDNVVNFSFPFNPKLFVHRVGRVARAGRSGTAYSIMTFEDFPYY 382

Query: 358 DAIEKLIEKKVD--WLNGDL 375
             + + I + +    + GDL
Sbjct: 383 VDLMQFIGRPLQSAPVPGDL 402


>gi|189502902|gb|ACE06832.1| unknown [Schistosoma japonicum]
 gi|226469666|emb|CAX76663.1| Helicase at 25E [Schistosoma japonicum]
 gi|226469670|emb|CAX76665.1| Helicase at 25E [Schistosoma japonicum]
 gi|226469672|emb|CAX76666.1| Helicase at 25E [Schistosoma japonicum]
 gi|226469674|emb|CAX76667.1| Helicase at 25E [Schistosoma japonicum]
 gi|226469676|emb|CAX76668.1| Helicase at 25E [Schistosoma japonicum]
 gi|226469678|emb|CAX76669.1| Helicase at 25E [Schistosoma japonicum]
 gi|226473012|emb|CAX71192.1| Helicase at 25E [Schistosoma japonicum]
 gi|226473014|emb|CAX71193.1| Helicase at 25E [Schistosoma japonicum]
 gi|226473016|emb|CAX71194.1| Helicase at 25E [Schistosoma japonicum]
 gi|226473018|emb|CAX71195.1| Helicase at 25E [Schistosoma japonicum]
 gi|226473020|emb|CAX71196.1| Helicase at 25E [Schistosoma japonicum]
          Length = 426

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 94/383 (24%), Positives = 169/383 (44%), Gaps = 5/383 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FV+  +  
Sbjct: 45  FRDFILKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVIATLQQ 104

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  +G A   +             ++  + F KY     + V      I  + +      
Sbjct: 105 LDPEGEANTSVLVLCHTRELAFQISKEYERFSKYMPKIKVGVFFGGMPIRKDIETLTKSP 164

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+      +    ++   L +    ++ +    +  +     +Q I  + P  +Q +
Sbjct: 165 VHIVVGTPGRILDLVRSKTLKLQHVKHFIIDECDKMLDTLDMRRDVQEIFRMTPHQKQVM 224

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM+ E++ V  NF+Q+P  I +   S               +  K   L +     
Sbjct: 225 MFSATMSKEIRPVCRNFMQDPLEIFIENDSKLTLHGLRQHYVKVKENEKNRKLFEL--LD 282

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      IIF    +  + L   L  Q F   A+H N+ Q  R++    FK    +L+VA
Sbjct: 283 ELQFNQVIIFVKSVQRCMALAQLLVDQNFPAIAMHRNMAQEERLERYQAFKNFQKRLLVA 342

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAI 360
           ++L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T ++ E D K ++ +
Sbjct: 343 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDEQDAKVLNEV 402

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           +   E  +  L  D+  ++  +E
Sbjct: 403 QNRFEVNISELP-DVMEISSYME 424


>gi|302811016|ref|XP_002987198.1| hypothetical protein SELMODRAFT_158505 [Selaginella moellendorffii]
 gi|300145095|gb|EFJ11774.1| hypothetical protein SELMODRAFT_158505 [Selaginella moellendorffii]
          Length = 493

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 106/364 (29%), Positives = 178/364 (48%), Gaps = 5/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  L LS     A+ + G+   T IQ ++IP +L+  DV G A+TG+GKT +F++P +
Sbjct: 5   MNFGALPLSEPTKNAIAEIGFTNMTEIQSRSIPELLKGRDVLGAARTGSGKTLAFLVPAV 64

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK- 118
            +L   R   R    + I+ PTRELA Q+     K  K+++ T  +++GG+    + +  
Sbjct: 65  ELLYHARFMPRNGTGVLIISPTRELAMQIYGVARKLMKHHSQTHGIVMGGVKRNVEAEAL 124

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +    ++      +    N    L  N++ LVIDEADR+L++GF   ++ I  L+P  R
Sbjct: 125 KKGVNLLVSTPGRLLDHLQNTKGFLFKNLQCLVIDEADRILEIGFEEDMKQIIKLLPKER 184

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT T +++ +++   +            +  T+E          + K  LL   
Sbjct: 185 QTVLFSATQTTKVEDLAKLSFKKAPIYIGVDDERSKATVEGLEQGYCVVKTDKRFLLLFT 244

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  ++F +   +V      L         IHG   Q+ R      F      +
Sbjct: 245 FLKKNLKKKVMVFFSSCNSVKFHGELLNFIDIPCLDIHGKQKQQKRTNTYFEFCNAEKGI 304

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIKH 356
           ++ +D+AARGLDIP V  +  +D P+  + YIHR+GRT R   GR G+A   +  E++  
Sbjct: 305 LLCTDVAARGLDIPAVDWIIQYDPPDDPKEYIHRVGRTARGESGR-GRALLFLTPEELGF 363

Query: 357 IDAI 360
              +
Sbjct: 364 KRYL 367


>gi|154686775|ref|YP_001421936.1| YqfR [Bacillus amyloliquefaciens FZB42]
 gi|154352626|gb|ABS74705.1| YqfR [Bacillus amyloliquefaciens FZB42]
          Length = 438

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 139/442 (31%), Positives = 212/442 (47%), Gaps = 12/442 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L P ++ AV   G+ +PT IQ + IP VL+   V G +QTGTGKT +++LP+L 
Sbjct: 5   KFDGYNLKPFIIDAVHRLGFYEPTDIQKRLIPAVLKNESVIGQSQTGTGKTHAYLLPILN 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++ G   V+   T           Q A    +  ++  +     IGG   +    KL+ 
Sbjct: 65  RIDPGSDTVQAVITAPTRELANQIHQEALKITQGAEDEPIRTKCFIGGTDKQKSIDKLKT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI D      L +   + LVIDEAD MLDMGF+  +  I S +P   Q L
Sbjct: 125 QPHLVVGTPGRIADLIKAQALNVYKAQSLVIDEADLMLDMGFLEDVDYIGSRMPEELQML 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+ ++L+   + +++NPK   V     TAE IEH  V +  +   K       + S
Sbjct: 185 VFSATIPEKLKPFLKKYMENPKYAHVEPKRITAEKIEHVLVPSKQRDKDKLLFE---MMS 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                 GI+F N K    ++   L ++G  V  +HG +  R R K++    +     ++A
Sbjct: 242 HLNPYLGIVFANTKNTADHIAKYLTEKGMRVGLLHGGLTPRERKKVMKQINDLEFTYVIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+DI  V HV N+++P+  + Y+HR+GRT RAG  G+A T+    D   +  +E
Sbjct: 302 TDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQALTIYELSDEDALARLE 361

Query: 362 KLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKN--NPIPQKSTGFDRRKKNYSSQKS 418
           K+       +  D + L N   +K D       RK   N   Q +    ++ K       
Sbjct: 362 KM------GIVFDYAELVNGEWKKGDDRHRRKNRKKTANEADQIAKRLVKKPKKVKPGYK 415

Query: 419 HIPLKESEKISKLQQDIQENDA 440
                E EKI K Q+  Q N  
Sbjct: 416 KKMSYEMEKIKKKQRRNQSNRG 437


>gi|114613155|ref|XP_001144942.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 isoform 5 [Pan
           troglodytes]
          Length = 532

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 122/490 (24%), Positives = 209/490 (42%), Gaps = 41/490 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F  +GL P+++ AV D G+ +PT IQ K IPL L+  D+   A+TG+GKTA++ +PM   
Sbjct: 9   FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQ 115
            L     G    +  R L+L PT+ELA Q     ++        V +            +
Sbjct: 69  LLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQR 128

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              +E+   V+      +         L +++E+LV+DEAD +   GF   ++++   +P
Sbjct: 129 AVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q  L SAT  +++Q + E  L NP  +++             F         K  LL
Sbjct: 189 RIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVICETEEDKFLLL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL+        ++F N  +    L   LE+     C ++G +  RSR  I+S F +G 
Sbjct: 249 YALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGF 308

Query: 296 IQLMVASDLA---------------------------ARGLDIPDVGHVFNFDVPNRAEN 328
              ++A+D                             ARG+D   V  V NFD+P   E 
Sbjct: 309 YDCVIATDAEVLGAPVKGKRRGRGPKGDKASDLEAGVARGIDFHHVSAVLNFDLPPTPEA 368

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHR GRT RA   G   T V   +  H+  IE+L+    +     L      +E+I+  
Sbjct: 369 YIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELL--SGENRGPILLPYQFRMEEIEGF 426

Query: 389 QHNHARKNNPIPQKSTGFDR----RKKNYSSQKSHIPLKESEK-ISKLQQDIQENDADSL 443
           ++        + +++    R    +++   S+K     +++ + +  L+ D+  + A   
Sbjct: 427 RYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVK 486

Query: 444 GFRGNMPAFM 453
              G++P ++
Sbjct: 487 PHLGHVPDYL 496


>gi|226290234|gb|EEH45718.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5
           [Paracoccidioides brasiliensis Pb18]
          Length = 1079

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 118/479 (24%), Positives = 209/479 (43%), Gaps = 34/479 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            ++  GL  + +  +    Y  PT IQ + IP ++   DV G+A+TG+GKT +F+LPM  
Sbjct: 468 KWSQCGLGVQTLDVIRKLNYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFR 527

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++  R    +  P  LI+ PTRELA Q+    + + K  NL      GG P + Q  +L
Sbjct: 528 HIKDQRPLENMEGPIGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAEL 587

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D           +  +  +V+DEADRM DMGF P +  I   V  
Sbjct: 588 KRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNVRP 647

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT                     N  +   +T+           S     + 
Sbjct: 648 QRQTVLFSATFPR------------------NMEALARKTLTKPVEIVVGGRSVVAPEIT 689

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q+++ ++     +       ++    ++ + +           +  +          G  
Sbjct: 690 QIVEVRNEDTKFVRLLALLGDLYADDNNEDARTLIFVDRQEAAEWSAPRPYAQGLPAGVF 749

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+ +AARGLD+  +  V N+D PN  E+Y+HR GRTGRAG  G A T + +   ++
Sbjct: 750 PILIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEVQERY 809

Query: 357 IDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARK-------NNPIPQKSTGFDR 408
              I K +++    +   +  + N  +EK+   +   +              ++    +R
Sbjct: 810 SVDISKALKQSGQPVPEAVQKMVNSFIEKVKAGKEKASGSGFGGKGLERLDQERDAARNR 869

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR---GKLNDK 464
            +K Y + +     ++ +K  K +    +  +         P   +PK     GK+   
Sbjct: 870 ERKTYKTGEEGEEEEKEDKKDKKEDIFSKAASAVQAASIPAPTPGVPKGIDLDGKITVH 928


>gi|223985766|ref|ZP_03635810.1| hypothetical protein HOLDEFILI_03116 [Holdemania filiformis DSM
           12042]
 gi|223962276|gb|EEF66744.1| hypothetical protein HOLDEFILI_03116 [Holdemania filiformis DSM
           12042]
          Length = 456

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 124/459 (27%), Positives = 213/459 (46%), Gaps = 25/459 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L       +   G+ +PT IQ   IP+ L+  D+ GI++TGTGKT +F++P++ 
Sbjct: 3   QFNDFALRASAQKLIELEGFQEPTAIQAAVIPVALKGRDLIGISETGTGKTHAFLIPLME 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            +     +V+     I  PTRELA Q+ +  +   +      V L+ GG+  E     ++
Sbjct: 63  KINPELPQVQAV---ITAPTRELAMQIYNRAKTMTQADPRLRVRLITGGLDREKMADSVK 119

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               ++I TPGRI D F ++  L ++   +LV+DEAD  L+ GF+  I  I S +    Q
Sbjct: 120 TQPHLVIGTPGRIKDLFLDQEVLRVDTASVLVVDEADMTLEFGFLEDIDAIASRMGNHLQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSAT+   L+   + ++Q P+ I++       +              +  A     +
Sbjct: 180 MMAFSATIPQGLKPFLKKYMQTPQTIKIE---QETKMDPKIEHILVPCKHRSYAETLLQI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    +IF N ++      ++L +    V  IHG +  R R + +   ++     +
Sbjct: 237 LPGFMPYVCLIFANTREEAAATANALREADVPVIEIHGGLQPRQRRQAMKQLEQADHSYI 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV +   PN  + YIHR GRTGRAGR G  F L  ++D + I +
Sbjct: 297 VATDIAARGIDIDGITHVVSLGFPNELDFYIHRAGRTGRAGREGTCFALYQEQDERAIRS 356

Query: 360 I-EKLIEKKVDWLN---------GDLSSLNP-PLEKIDIAQHNHARKNNPIPQKSTGFD- 407
           + E+ +  +V              D   ++P    + +IA+  + +K    P        
Sbjct: 357 LKERGVHFEVRSFKNGVWQAQRQADRRKMSPGQQREKEIARSLNRKKEKVKPGYKKKKAA 416

Query: 408 -----RRKKNYSSQKSHIPLKESEKISKLQQDIQENDAD 441
                +RK+  +  +S I  +  E+   LQ+  +E  +D
Sbjct: 417 LVKQIQRKERRAMIQSEIQAQRKERYKALQRQKREEGSD 455


>gi|218676540|ref|YP_002395359.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218324808|emb|CAV26511.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 468

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 136/389 (34%), Positives = 216/389 (55%), Gaps = 18/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+DLGL   ++  + +  Y +PTPIQ + IP VL   D+   A TG+GKTA+F LP+L 
Sbjct: 49  NFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQ 108

Query: 62  ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113
            + +         +      LIL PTRELA QVAD+ + Y  ++N  +    + GG+   
Sbjct: 109 QIHEDAPLDRRSGKGNYVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVN 168

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L  G D+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  I  L
Sbjct: 169 TQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKL 228

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  +QTLLFSAT  ++++ ++   L +P  +++ + +++        V    + +    
Sbjct: 229 LPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAH 288

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L+QQ        +  +IF N K +  +L   L K+G      HG+  Q SR +IL +FK 
Sbjct: 289 LIQQHEW-----RQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKS 343

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I +++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GR+G  G A +L+  ED
Sbjct: 344 GEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRSGEVGLALSLIDHED 403

Query: 354 IKHIDAIEK-----LIEKKVDWLNGDLSS 377
             H   IEK     L  ++++    D  +
Sbjct: 404 YHHFTIIEKKNKIRLEREQIEGFEVDEEA 432


>gi|195390289|ref|XP_002053801.1| GJ23143 [Drosophila virilis]
 gi|194151887|gb|EDW67321.1| GJ23143 [Drosophila virilis]
          Length = 670

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 113/392 (28%), Positives = 199/392 (50%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L   +S   + A+ + G+ + T IQ K++  +L+  D+ G AQTG+GKT +F++P 
Sbjct: 177 SFASLKGAVSEATLQAIAEMGFSEMTEIQAKSLTPLLKGRDLVGAAQTGSGKTLAFLIPA 236

Query: 60  LTILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K R   R     +I+ PTREL+ Q     ++   +++ T  L++GG   + +++K
Sbjct: 237 VELINKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEK 296

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G ++L+ TPGR +    N    L  N++ L+IDE DR+L++GF   ++ I +L+P  
Sbjct: 297 LGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKR 356

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T+ +  +S+  L+          +    T+E          S+K  L+  
Sbjct: 357 RQTMLFSATQTERIDALSKLALKKEPIYVGVHDNQETATVEGLEQGYIVCPSEKRLLVLF 416

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V             V +IHG   Q  R      F      
Sbjct: 417 TFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTSTFFQFCNAESG 476

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
           +++ +D+AARGLDIP V  +  +D P+    YIHR+GRT R  G  G A  ++  E++  
Sbjct: 477 ILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLMLRPEELGF 536

Query: 357 IDAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
           +  + K  +  ++        ++ +   LEK+
Sbjct: 537 LRYL-KAAKVPLNEFEFSWQKIADIQLQLEKL 567


>gi|327304757|ref|XP_003237070.1| ATP-dependent RNA helicase DBP10 [Trichophyton rubrum CBS 118892]
 gi|326460068|gb|EGD85521.1| ATP-dependent RNA helicase DBP10 [Trichophyton rubrum CBS 118892]
          Length = 940

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 125/406 (30%), Positives = 199/406 (49%), Gaps = 41/406 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+P ++ A+   G+  PTPIQ KTIPL+L   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 94  FQAMGLNPNLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 153

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                 +V   R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 154 FRNHSTKVGA-RGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMASN 212

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I   V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 213 PDIIIATPGRFLHLKVEMNLDLSSIRYAVFDEADRLFEMGFAAQLTEILHALPTSRQTLL 272

Query: 183 FSATMTDELQKV----------------------------------------SENFLQNP 202
           FSAT+   L +                                                 
Sbjct: 273 FSATLPKSLVEFARAGLQEPTLIRLDADSKISPDLQSAFFTVKSADKEGALLHILHDLIK 332

Query: 203 KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLC 262
                      A+          ++  K+  +         T  + I+F   K +V  + 
Sbjct: 333 IPTGETEAGKMAKKEAQEGKQGASKKRKRADMKGPSAHGTPTEHSTIVFVATKHHVEYIA 392

Query: 263 HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322
           H L   GF+V   +G+++Q +R   + NF+ G   ++V +D+AARG+DIP + +V N+D 
Sbjct: 393 HLLRHSGFAVSYAYGSLNQTARKIQVQNFRAGISNILVVTDVAARGIDIPVLANVINYDF 452

Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           P++ + YIHR+GRT RAG+ G +++LV   D  ++  ++  + +++
Sbjct: 453 PSQPKIYIHRVGRTARAGQKGWSYSLVRDSDAPYLIDLQLFLGRRL 498


>gi|308501725|ref|XP_003113047.1| hypothetical protein CRE_25460 [Caenorhabditis remanei]
 gi|308265348|gb|EFP09301.1| hypothetical protein CRE_25460 [Caenorhabditis remanei]
          Length = 852

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 105/394 (26%), Positives = 168/394 (42%), Gaps = 17/394 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA       ++ A+  + Y +PTPIQ   IP  +   DV GIA+TG+GKTA+++ P + 
Sbjct: 267 SFAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSAISGRDVLGIAKTGSGKTAAYLWPAIV 326

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK- 118
            +           P  +I+ PTRELA QV    +++ K YN+ V    GG     Q+ + 
Sbjct: 327 HIMDQPDLKSGEGPVAVIVVPTRELAIQVFQEAKRFCKVYNINVICAYGGGSKWEQSNEL 386

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF-----IPYIQNITSL 173
              GA++++CTPGRI+D    G         LV DEADRM DMGF               
Sbjct: 387 QNEGAEMVVCTPGRIIDLVKMGSTNFLRTTFLVFDEADRMFDMGFGMLFIQDPYLKYKKS 446

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
                +++        +    S  F Q  +R+  +        ++       A   +K  
Sbjct: 447 SEAQVKSISDHVRPDRQCLMFSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVF 506

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV---------CAIHGNIDQRSR 284
           ++Q        +   ++       V+                        +      ++ 
Sbjct: 507 VMQSQEVKFHWLIRNLVEFASIGKVLIFVTKKLDAEDVAKKLKLKDFEVILLHGDMLQAE 566

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
                        ++VA+D+AARGLDI ++  V NFD+    + ++HRIGRTGRAG  G 
Sbjct: 567 RNDNLLKFRKKSPILVATDVAARGLDIAEIRTVINFDMARDIDTHVHRIGRTGRAGHKGT 626

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           A+TLV ++DI+ +  + K +E     +   L  L
Sbjct: 627 AYTLVTEKDIEMVGHLVKNLESVSQEVPKPLLDL 660


>gi|325193328|emb|CCA27668.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
 gi|325193516|emb|CCA27823.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 502

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 122/464 (26%), Positives = 206/464 (44%), Gaps = 41/464 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG++  +V      G   PT +Q   IP +L   +V G+AQTG+GKTA+F LP+L 
Sbjct: 45  SFESLGINSWLVKKCSQIGMTTPTTVQQHCIPAILDGRNVLGVAQTGSGKTAAFALPILH 104

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L         P  +IL PTRELA Q+AD    +G    +  A+++GG+    Q  KL++
Sbjct: 105 SLSM---DPYGPFAVILTPTRELAFQIADQMNIFGTFTGVRCAVIVGGMDMLEQKMKLQQ 161

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++I TPGR+ DH  +     ++ ++ LV+DEADR+L+  F   +  +   +P     
Sbjct: 162 QPHIIIATPGRLHDHLMHPDAPNLSLVKFLVLDEADRLLEQSFKSDLTFVLGKLPPAENR 221

Query: 181 LLFSATMT-------------------------DELQKVSENFLQNPKRIEVNTPSSTAE 215
                T T                         D L++    F Q  K   +     +  
Sbjct: 222 QTLYFTATLTEELNQVAGSDSFRFDGTALIKTRDALEQYYLFFPQQIKMTYLMYLLLSLT 281

Query: 216 TIEHCFVATYAQYSKKCALLQQLL-----QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
                      +YSK  A   +        +    K+ I+F ++ +    +     + G 
Sbjct: 282 PQVEETNRQKQRYSKHSAKSLEKTLKSLEATAQAAKSVIVFVSKCQTCELIGEVTRELGL 341

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           +   +H  + Q  R+  L  F  G   +++++D+A+RGLDIP V  V  FD+P  A  YI
Sbjct: 342 NCVTLHSIMSQSRRLAALGKFTSGLAPILISTDVASRGLDIPTVDVVIQFDLPRVASTYI 401

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD--WLNGDLSSLNPPLEKIDIA 388
           HR+GR  R G  G++ +LV + DI  +  +E  + KK+D   +      +   L  + +A
Sbjct: 402 HRVGRACRTGGRGRSISLVTQHDIALLQHLEAHVGKKMDNYEVFAKEEQVLKLLNDVSVA 461

Query: 389 QHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQ 432
                 +   +     GF+ + +   +++S    + S++ S L 
Sbjct: 462 T-----RCAKLKLYERGFEDKVRERKARRSKQYGRLSDQKSHLA 500


>gi|254571525|ref|XP_002492872.1| RNA helicase in the DEAD-box family, necessary for prespliceosome
           formation [Pichia pastoris GS115]
 gi|238032670|emb|CAY70693.1| RNA helicase in the DEAD-box family, necessary for prespliceosome
           formation [Pichia pastoris GS115]
 gi|328353117|emb|CCA39515.1| ATP-dependent RNA helicase DDX46/PRP5 [Pichia pastoris CBS 7435]
          Length = 784

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 128/438 (29%), Positives = 213/438 (48%), Gaps = 22/438 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++  L L  + +  + D  Y  PTPIQ + +P ++   D+ GIA+TG+GKT +F+LPM  
Sbjct: 216 EWCQLALPQQFMSVIEDLKYEAPTPIQSEALPNLMSGKDLIGIAKTGSGKTLAFLLPMFR 275

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +  +        P  +IL PTRELA Q+    + + K+ NL    + GG     Q   +
Sbjct: 276 QIISQPDPESGEGPIGVILTPTRELALQIFKECKPFMKSLNLKGICVYGGASISQQISDI 335

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++     +CTPGR++D     +     ++    LV+DEADRM DMGF P +  I      
Sbjct: 336 KKRVHFAVCTPGRLIDLLTANSGRVTNLSRTSYLVLDEADRMFDMGFEPQVMKIIPNTRP 395

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL+FSAT   +++ +++  L NP  + V   S  A+TI         Q      L  
Sbjct: 396 DRQTLVFSATFPPKMEALAKKVLNNPLEVIVGEKSVVADTITQKVFVIDPQERFSKLLEL 455

Query: 237 QLLQSQDTMK-NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                        ++F  ++ +   L  +L K+G++  ++HG  +Q  R  I+ +FK G 
Sbjct: 456 LGTFKSKDPTGKVLVFVERQDSADVLLTNLLKRGYNAQSLHGGKEQMDRDFIIQDFKTGN 515

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+ +AARGLD+  +  V N+D PN  E+Y+HR+GRTGRAG  G+A T +  +D +
Sbjct: 516 SDILVATSVAARGLDVKRLNLVINYDSPNHMEDYVHRVGRTGRAGSTGEAVTFLTAKDYR 575

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
               + + ++     +  ++ ++                 N  I Q  TG  +R   Y  
Sbjct: 576 AAYDVSRALKVSKQLVPDNVQAV----------------ANVFIEQLKTGSAKRGSGYGG 619

Query: 416 QKSHIPLKESEKISKLQQ 433
           +      +E E   +L++
Sbjct: 620 KGLEKLQEERELKRQLEK 637


>gi|156386665|ref|XP_001634032.1| predicted protein [Nematostella vectensis]
 gi|156221110|gb|EDO41969.1| predicted protein [Nematostella vectensis]
          Length = 643

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 118/433 (27%), Positives = 201/433 (46%), Gaps = 14/433 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  +S + +  ++ AG+V PT IQ + IP+ L   DV G A+TG+GKT +F++P++ 
Sbjct: 51  KFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPIIE 110

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L + +         L++ PTRELA Q  +   K G  ++L+  L+IGG   + + K++ 
Sbjct: 111 TLWRQKWTSMDGLGALVISPTRELAYQTFEVLVKIGNKHDLSAGLIIGGKDLKNEQKRIM 170

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V+      +            +++ILV+DEADR+LDMGF P +  I   +P  RQT
Sbjct: 171 KTNIVVCTPGRLLQHMDETPNFDCTSLQILVLDEADRILDMGFAPTLNAIIENLPSERQT 230

Query: 181 LLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LL+SAT T  ++     +  +           ++                K   L   + 
Sbjct: 231 LLYSATQTRSVKDLARLSLQEPTYISAHEKSDTSTPNRLTQSYVVCELPDKLNFLFSFIR 290

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               +     +   ++   +       + G  + A++G   Q  R+ I   F + T  ++
Sbjct: 291 NHLKSKILVFVSSCKQVKFIYEGFRRLQPGIPLMALYGKQKQLKRVAIYDEFCKKTQCVL 350

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V   D P  A  YIHR GRT R  + G++  ++   + + +  
Sbjct: 351 FATDIAARGLDFPAVNWVIQLDCPEDANTYIHRAGRTARYQKDGQSLLVLLPSEEQEM-- 408

Query: 360 IEKLIEKK-----VDWLNGDLSSLNPPLEKI---DIAQHNHARKNNPIPQKSTGFDRRKK 411
           I+ L +KK     +      +SS+   LE     D    + A+K+     +S      KK
Sbjct: 409 IKALKDKKVPINEIKVNPKKMSSIQSKLESFLAQDQELKHWAQKSIISYVRSVFLQSNKK 468

Query: 412 NYSSQKSHIPLKE 424
            + + K  +P+KE
Sbjct: 469 IFDTTK--LPIKE 479


>gi|62740097|gb|AAH94097.1| Unknown (protein for MGC:115016) [Xenopus laevis]
          Length = 695

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 132/396 (33%), Positives = 211/396 (53%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ +   ++  +    Y +PTP+Q   IP+++++ D+   AQTG+GKTA+F+LP+L+
Sbjct: 220 SFHDVTMGEIIMGNIQLTRYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPILS 279

Query: 62  ILE---------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
            +                +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 280 QIYADGPGDAMKHLQENGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVV 339

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 340 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 399

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      RQT++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 400 IRRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVV 459

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK    L   L  +G++  +IHG+  QR
Sbjct: 460 WVEEMDKRSFLLDLLNATGKDSL--TLVFVETKKGADALEDFLYHEGYACTSIHGDRSQR 517

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 518 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 577

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   +++I     +  L+ +    +   L ++
Sbjct: 578 GLATSFFNEKNINITKDLLDLLVEAKQEVPSWLENM 613


>gi|156119497|ref|NP_001095245.1| putative ATP-dependent RNA helicase an3 [Xenopus laevis]
 gi|113825|sp|P24346|DDX3_XENLA RecName: Full=Putative ATP-dependent RNA helicase an3
 gi|65060|emb|CAA40605.1| ATP dependent RNA helicase [Xenopus laevis]
          Length = 697

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 132/396 (33%), Positives = 211/396 (53%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ +   ++  +    Y +PTP+Q   IP+++++ D+   AQTG+GKTA+F+LP+L+
Sbjct: 222 SFHDVTMGEIIMGNIQLTRYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPILS 281

Query: 62  ILE---------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
            +                +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 282 QIYADGPGDAMKHLQENGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVV 341

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 342 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 401

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      RQT++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 402 IRRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVV 461

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK    L   L  +G++  +IHG+  QR
Sbjct: 462 WVEEMDKRSFLLDLLNATGKDSL--TLVFVETKKGADALEDFLYHEGYACTSIHGDRSQR 519

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 520 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 579

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   +++I     +  L+ +    +   L ++
Sbjct: 580 GLATSFFNEKNINITKDLLDLLVEAKQEVPSWLENM 615


>gi|168019686|ref|XP_001762375.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686453|gb|EDQ72842.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 689

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 123/396 (31%), Positives = 207/396 (52%), Gaps = 12/396 (3%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
           A+LG+   VV A+   G  K  PIQ   +   +Q  D+ G A+TGTGKT +F +P++  +
Sbjct: 50  ANLGIPQAVVDALAKRGIEKLFPIQRAVLDPAMQGRDLIGRAKTGTGKTLAFGIPIIHNI 109

Query: 64  EKGRARVRMPRTLILEPT-----RELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            K     R  R     P                 E       L+   + GG+    Q ++
Sbjct: 110 LKAHEADRTSRRSGRAPRALVLAPTRELAKQVEREFMESAPMLSTVCVYGGVSITTQQRQ 169

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RG DV + TPGRI+D   R  L + ++  LV+DEAD+ML +GF   ++ I   +P  R
Sbjct: 170 LQRGVDVAVGTPGRIIDLIERRSLSLRDVSYLVLDEADQMLAVGFEEDVERILEQMPEER 229

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q++LFSATM + ++K+S+ +L++P  I++   S+         +A     + K  +L  L
Sbjct: 230 QSMLFSATMPNWVKKLSKKYLKSPLTIDLVGDSNEKLAEGIKMLAVCIPPAAKRTVLNDL 289

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +    ++   I+F   K++  +   S+  +     A+HG+I Q  R + L++F+EG   +
Sbjct: 290 ISVHGSVGKTIVFTQTKRDADD-VASVLGRTLGCEALHGDITQSQRERTLASFREGRFSV 348

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDIP+V  V ++++PN  E ++HR GRTGRAG+ G A  + ++   + + 
Sbjct: 349 LVATDVAARGLDIPNVDLVVHYEIPNDPETFVHRSGRTGRAGKDGTAILMFSENQKRTMR 408

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
            IE  +  K   ++       P +E++  A    A+
Sbjct: 409 NIEMDVGCKFTLMS------PPQMEEVLQASSKAAK 438


>gi|157156397|ref|YP_001462652.1| ATP-dependent RNA helicase DbpA [Escherichia coli E24377A]
 gi|193062707|ref|ZP_03043801.1| ATP-independent RNA helicase DbpA [Escherichia coli E22]
 gi|194426050|ref|ZP_03058606.1| ATP-independent RNA helicase DbpA [Escherichia coli B171]
 gi|260843691|ref|YP_003221469.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O103:H2 str. 12009]
 gi|260855042|ref|YP_003228933.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O26:H11 str. 11368]
 gi|260867791|ref|YP_003234193.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O111:H- str. 11128]
 gi|300822487|ref|ZP_07102626.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300904996|ref|ZP_07122814.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|301305840|ref|ZP_07211925.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|331667742|ref|ZP_08368606.1| ATP-independent RNA helicase DbpA [Escherichia coli TA271]
 gi|331677132|ref|ZP_08377828.1| ATP-independent RNA helicase DbpA [Escherichia coli H591]
 gi|157078427|gb|ABV18135.1| ATP-independent RNA helicase DbpA [Escherichia coli E24377A]
 gi|192931829|gb|EDV84429.1| ATP-independent RNA helicase DbpA [Escherichia coli E22]
 gi|194416105|gb|EDX32371.1| ATP-independent RNA helicase DbpA [Escherichia coli B171]
 gi|257753691|dbj|BAI25193.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O26:H11 str. 11368]
 gi|257758838|dbj|BAI30335.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O103:H2 str. 12009]
 gi|257764147|dbj|BAI35642.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O111:H- str. 11128]
 gi|300403145|gb|EFJ86683.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|300524903|gb|EFK45972.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300838930|gb|EFK66690.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|315254386|gb|EFU34354.1| DEAD/DEAH box helicase [Escherichia coli MS 85-1]
 gi|323153565|gb|EFZ39816.1| ATP-independent RNA helicase dbpA [Escherichia coli EPECa14]
 gi|323162444|gb|EFZ48296.1| ATP-independent RNA helicase dbpA [Escherichia coli E128010]
 gi|323179693|gb|EFZ65254.1| ATP-independent RNA helicase dbpA [Escherichia coli 1180]
 gi|324117462|gb|EGC11368.1| DEAD/DEAH box helicase [Escherichia coli E1167]
 gi|331065327|gb|EGI37222.1| ATP-independent RNA helicase DbpA [Escherichia coli TA271]
 gi|331075821|gb|EGI47119.1| ATP-independent RNA helicase DbpA [Escherichia coli H591]
          Length = 457

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 207/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W     +S   PLE
Sbjct: 357 SDMLQIKLNWQTPPANSSIVPLE 379


>gi|145534991|ref|XP_001453234.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124420945|emb|CAK85837.1| unnamed protein product [Paramecium tetraurelia]
          Length = 567

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 108/380 (28%), Positives = 178/380 (46%), Gaps = 3/380 (0%)

Query: 1   MDFADLGLSPKVV-CAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M F D+   P+++   +L AG+  PT IQ +   + L  HD+ GIAQTG+GKT +F+LP 
Sbjct: 111 MRFEDVQCFPQILMDLLLKAGFKGPTAIQAQGWSIALTGHDLIGIAQTGSGKTLAFLLPA 170

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  +   +AR    + LIL PTREL  Q+ + F+K+     L  A L GG     Q  +L
Sbjct: 171 IVHI-LAQARSHDAKCLILAPTRELTLQIYEQFQKFSVGSQLYAACLYGGQDRYIQKSQL 229

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G  VLI  PG          L M     +             + +       V     
Sbjct: 230 RKGPQVLIACPGLYHPQIADRMLDMGFEPQIRKVVDQIRPQRQTMLFSATWPKEVQKLAL 289

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
                  +  ++  V     +  K+I     +       +  +  +        L    L
Sbjct: 290 DFCKQEPVHIQIGNVELTSNKMIKQIVYVMKAIEKNQRYNQTIDDHQYLCYLNILRLLYL 349

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  +IFC+ KK    L  +L+++G    A+HG+  Q  R  ++S+F+ G    +
Sbjct: 350 LKDIAHKKILIFCSTKKGCDQLQKTLDREGIRCLALHGDKKQSERDYVMSHFRNGRSTAL 409

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHID 358
           +A+D+A+RGLDI D+  V N+D+P   E+Y+HRIGRTGRAG +G++ +   + ED +   
Sbjct: 410 IATDVASRGLDIKDIEIVVNYDMPKVIEDYVHRIGRTGRAGANGQSISFFASDEDARMAK 469

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + +++ +  + +  +L SL
Sbjct: 470 DLVEILRESQNDIPYELRSL 489


>gi|117619321|ref|YP_856922.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117560728|gb|ABK37676.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 461

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 162/439 (36%), Positives = 249/439 (56%), Gaps = 12/439 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LGLSP ++ AV + GY +PTPIQ + IP +L   DV G AQTGTGKTA F LPML
Sbjct: 1   MSFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L     R R      +L PTRELAAQV ++  KY  +      +  GG+  +     +
Sbjct: 61  QRLLANHGRGRRQVRALVLTPTRELAAQVGESIIKYAHHLPFRTLIAYGGVSIKPNLDAI 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G D+L+ TPGR+LD   +G L ++ +E+LV+DEADRMLDMGFI  I+ I   +P  RQ
Sbjct: 121 KLGIDILVATPGRLLDLLTQGALTLSELEVLVLDEADRMLDMGFIVDIRRIMKALPAERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT + E++ ++++ L+ P  IEV+  ++ AE +    +    +  ++       +
Sbjct: 181 TLLFSATFSSEIKALADDLLKEPTLIEVDPSNTAAEQVTQRIIQVDRERRREL---LSHM 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +   +  ++F   K+    L   ++K G    AIHG+  Q +R + L++F+EG ++++
Sbjct: 238 IGRGNWQRVLVFVRTKQIADRLAQQMQKDGLDTVAIHGDKSQGARNRALADFREGKVRVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  + HV NF++P  AE+YIHRIGRTGRAGR G+A +LV+++++  +  
Sbjct: 298 VATDIAARGLDIDQLPHVINFELPQMAEDYIHRIGRTGRAGRGGEAISLVSQDELGQLKG 357

Query: 360 IEKLIEK--KVDWLNGDLSSLNPPLEKIDIAQ------HNHARKNNPIPQKSTGFDRRKK 411
           IE LI +   V+ L G   S  P  + +  ++            N       +   + K 
Sbjct: 358 IEALIGQSLSVEILEGYEPSGKPSRQTLPGSKPVQNPPRARGAANAKGGNGKSAAGKSKA 417

Query: 412 NYSSQKSHIPLKESEKISK 430
                K   P ++ E + +
Sbjct: 418 KSDGGKKPAPARKREVVGE 436


>gi|258676573|gb|ACV87294.1| VASA DEAD-box protein [Phallusia mammillata]
          Length = 851

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 130/387 (33%), Positives = 209/387 (54%), Gaps = 11/387 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L   +   V  A Y  PTP+Q  ++P++L   D+   AQTG+GKTA+F+LP+LT
Sbjct: 385 SFEAANLPETIAANVKRANYDSPTPVQKFSLPIILADRDLMACAQTGSGKTAAFLLPVLT 444

Query: 62  ILEK------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            L +        +  ++P+ +I+ PTREL  Q+     K+ +   +   +  GG     Q
Sbjct: 445 NLVRTGLASSSFSEKQLPQAIIVGPTRELVYQIYLEARKFSRGTIIRPVVAYGGTSTNYQ 504

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----IT 171
            K+L++G  +LI TPGR++D  NRGK+ +++++ +++DEADRMLDMGF   I+       
Sbjct: 505 LKELQKGCHLLIATPGRLMDFINRGKIGLSSVQYIILDEADRMLDMGFETEIRKLVDSPG 564

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 R TL+FSAT  DE+QK++ +FL+             A +     V    Q  K+
Sbjct: 565 MPAKNERHTLMFSATFPDEIQKLAHDFLREDFLFLTVGRIGGACSDVTQVVLQVDQGDKR 624

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L++ L    DT    ++F   K++   L  SL ++G+   +IHG+  Q+ R + L +F
Sbjct: 625 NKLIELLADVADTGSRTLVFVETKRSADFLACSLCQEGYPTTSIHGDRLQQEREEALRDF 684

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   ++VA+ +AARGLDIP V HV N+D+P+  + Y+HRIGRTGR G  G+A +    
Sbjct: 685 KSGKCPILVATSVAARGLDIPKVEHVVNYDLPSEVDEYVHRIGRTGRCGNLGRATSFYDD 744

Query: 352 E-DIKHIDAIEKLIEKKVDWLNGDLSS 377
             +     ++ K++   +  +   L  
Sbjct: 745 SANASLARSLVKILADSIQEVPSWLEE 771


>gi|303317020|ref|XP_003068512.1| ATP-dependent RNA helicase DBP8, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240108193|gb|EER26367.1| ATP-dependent RNA helicase DBP8, putative [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 536

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 118/381 (30%), Positives = 179/381 (46%), Gaps = 17/381 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ LGL+P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F  P+L 
Sbjct: 107 SFSSLGLAPWLVGSLSAMAIRRPTAIQRACIPEILKGRDCIGGSRTGSGKTVAFAAPILH 166

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                         ++L PTRELA Q+ + F+      +L   L+ GG     Q   L  
Sbjct: 167 RW---SEDPFGIFAVVLTPTRELALQIFEQFKAISAPQSLKPVLITGGSEMRPQAIALST 223

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM-------GFIPYIQNITSLV 174
              V+I TPGR+ DH              V        D          +P ++   S V
Sbjct: 224 RPHVVIATPGRLADHIKTSGQDTIYGLNRVRMVVLDEADRLLASGPGSMLPDVETCLSAV 283

Query: 175 PFTRQTLL--FSATMTDEL-----QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           P +       F+AT+T E+        S++ L           ++T              
Sbjct: 284 PSSTSRQTLLFTATVTPEVRALKSMPRSKDRLHIFVTEISTENNTTIPPTLKQCYLQVPM 343

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             ++  L   L    ++ K  IIFCN+ K    L   L + G  V ++H  + Q  R   
Sbjct: 344 THREAFLHVLLSTDANSSKPAIIFCNRTKTADLLDRLLRRLGHRVTSLHSLLPQSERTSN 403

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L+ F+    +L+VA+D+AARGLDIP VG V NFDVP   ++YIHR+GRT RAGR G+A T
Sbjct: 404 LARFRASAARLLVATDVAARGLDIPSVGLVVNFDVPRNPDDYIHRVGRTARAGREGEAIT 463

Query: 348 LVAKEDIKHIDAIEKLIEKKV 368
           LV + D++ + AIE+ + +++
Sbjct: 464 LVGQRDVQLVLAIEERVGRQM 484


>gi|218700063|ref|YP_002407692.1| ATP-dependent RNA helicase DbpA [Escherichia coli IAI39]
 gi|218370049|emb|CAR17825.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           IAI39]
          Length = 457

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 206/383 (53%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPSIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L   G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNDIGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W     +S   PLE
Sbjct: 357 SDMLQIKLNWQTPPANSSIVPLE 379


>gi|147859772|emb|CAN78903.1| hypothetical protein VITISV_026451 [Vitis vinifera]
          Length = 692

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 104/391 (26%), Positives = 168/391 (42%), Gaps = 55/391 (14%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--L 60
           F +       +  +   G+V+PTPIQ +  P+ L+  D+ GIA+TG+GKT +++LP    
Sbjct: 298 FQEANFPGYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 357

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +    R   P  L+L PTRELA Q+ +   K+G    +    + GG P   Q + L+
Sbjct: 358 VSAQPPLVRGEGPIVLVLAPTRELAVQIQEEALKFGSFTKIRSTCIYGGAPKGPQIRDLQ 417

Query: 121 RGAD-------------VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
           RG               ++I TPGR++D        +  +  LV+DEADRMLDMGF P I
Sbjct: 418 RGWCTKILSIALMLGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQI 477

Query: 168 QNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           + I S +   RQTL +SAT   E++ ++  FL+NP ++ + +    A       V    +
Sbjct: 478 RKIISQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSQDLKANQSIQQVVEVVTE 537

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             K  +  +                                         +      +  
Sbjct: 538 TEKYNSNRR----------------------------------------PSTVMELVVVA 557

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
                            +    D+ D+  V N+D P+  E+Y+HRIGRTGRAG  G A T
Sbjct: 558 ARLTHTSIFINFSDGFESDGDGDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAIT 617

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
                + K    + K++++    ++  LS++
Sbjct: 618 FFTHSNAKFARDLIKILQEAGQVVSPALSAM 648


>gi|308803500|ref|XP_003079063.1| putative DEAD-box RNA helicase DEAD3 (ISS) [Ostreococcus tauri]
 gi|116057517|emb|CAL51944.1| putative DEAD-box RNA helicase DEAD3 (ISS) [Ostreococcus tauri]
          Length = 492

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 131/384 (34%), Positives = 197/384 (51%), Gaps = 14/384 (3%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI--- 62
           L L   V   V    + KPTP+Q   IP  LQ  D+   AQTG+GKTA+F  P++     
Sbjct: 3   LDLGAAVNKNVQRCKFKKPTPVQKYAIPSALQGRDLMACAQTGSGKTAAFCFPIIAGILK 62

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                    R   P  L+L PTRELA+Q+ +   K+     +   ++ GG P   Q + +
Sbjct: 63  KGLQGGHMNRKTYPLALVLSPTRELASQIHEESRKFAYQTGVASCVIYGGAPAVEQFRAM 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+LI TPGR++D  +R K+ ++    L +DEADRMLDMGF P I+ I         
Sbjct: 123 ERGCDLLIATPGRLIDLIDRAKISLSRCVYLALDEADRMLDMGFEPQIRQIVEQRDMPPC 182

Query: 180 ----TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
               T+LFSAT   E+Q+++ +FL +   + V    S+   I        + + K   LL
Sbjct: 183 GERQTMLFSATFPREIQRMAADFLDDYIFLTVGRVGSSHALITQSVERVNSYHEKSEMLL 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 +      ++F   K+    L   L   G    +IHG+  Q+ R   L +F+ G 
Sbjct: 243 DL---VEAVPGLTLVFVETKRGADQLEDFLFTNGKPATSIHGDRTQQEREAALKSFRSGK 299

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF-TLVAKEDI 354
             ++VA+D+AARGLDIP V HV NFD+P+  ++Y HRIGRTGRAG+ G+A    +  +D 
Sbjct: 300 TPILVATDVAARGLDIPHVTHVINFDLPSDIDDYTHRIGRTGRAGKKGRATALFLESKDG 359

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL 378
           +   ++  L+ +    +   L+ +
Sbjct: 360 QIARSLVDLMSEANQEVPTWLTQV 383


>gi|62180220|ref|YP_216637.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224583853|ref|YP_002637651.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238911959|ref|ZP_04655796.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|62127853|gb|AAX65556.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|224468380|gb|ACN46210.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|322714692|gb|EFZ06263.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 457

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 139/401 (34%), Positives = 222/401 (55%), Gaps = 10/401 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF AQ   L+
Sbjct: 64  RIDVTLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  +S    Q P RIE++T     + +       +   + +   L Q L 
Sbjct: 181 LLFSATWPEAIAAISGRVQQQPIRIEIDTV----DALPAIEQQFFETSAHEKISLLQTLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN KK+   +C +L   G S  A+HG+++QR R + L  F  G+ +++V
Sbjct: 237 SQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +  A E+ +  + +
Sbjct: 297 ATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANIL 356

Query: 361 EKLIEKKVDWLNGDL-SSLNPPLEKIDIAQHNHARKNNPIP 400
            ++++ K++WLN     SL P   ++     +  +K    P
Sbjct: 357 SEMLQLKLNWLNAPARQSLLPLAAEMATLCIDGGKKAKMRP 397


>gi|227510196|ref|ZP_03940245.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227190401|gb|EEI70468.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 453

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 123/455 (27%), Positives = 208/455 (45%), Gaps = 21/455 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++  L P ++ A+ D  + KPTP+Q K IP++LQ  DV G + TG+GKT +F+LP+  
Sbjct: 3   QFSEFHLKPFILNALDDLKFTKPTPVQEKLIPVILQHRDVVGQSATGSGKTHAFLLPIFN 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+   T             A    K+  +     + + G      ++K  + 
Sbjct: 63  DIDPKIDEVQAVITTPSRELAYQILDAAKQLAKFSPDPISIGSYVGGTDKKRQEDKLKKE 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+ D    G L ++    LVIDEAD  LDMGF+  + +I +      Q +
Sbjct: 123 QPQLIVGTPGRVWDLIKNGGLDVHTASKLVIDEADMTLDMGFLDVVDHIAASFGKHVQMM 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  ++    + ++ NP   E+   S  + TI++  ++T  Q   +         +
Sbjct: 183 VFSATIPQKITVFLKKYMDNPVIEEIPVSSIISPTIDNWLISTKGQDKNQLIYHLL---T 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  +IF N +K V  L   L  QG  V  +HG +  R R +I+   K    Q +VA
Sbjct: 240 VGEPYLVLIFANTRKRVEELTEYLRGQGLKVAMVHGGVKPRERKQIMKRIKNLDFQFVVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVP-NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +DLAARG+DI  V  V N D+P    E +IHR+GRTGR G  G + TL + ++ K ++  
Sbjct: 300 TDLAARGIDIEGVSQVINDDIPTEDLEFFIHRVGRTGRNGMSGTSITLYSPDEEKEVEE- 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI-------------PQKSTGFD 407
             L    + +    L + +  ++  D  +    RK                  +   G+ 
Sbjct: 359 --LEGMGIHFKPKALKN-HEIVDTYDRRRRQTHRKKREKLDPTMIGLIKKKKKKIKPGYK 415

Query: 408 RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADS 442
           R+ K   S+K  +  + S++     +  Q   +  
Sbjct: 416 RQIKMSISRKEEMDRRVSKREESRAKRKQRKQSSK 450


>gi|255718187|ref|XP_002555374.1| KLTH0G07766p [Lachancea thermotolerans]
 gi|238936758|emb|CAR24937.1| KLTH0G07766p [Lachancea thermotolerans]
          Length = 764

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 117/458 (25%), Positives = 211/458 (46%), Gaps = 30/458 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F DL LS + +  + D+ ++K T IQ  +IP+ L+ HD+   A+TG+GKT +F++P +  
Sbjct: 43  FKDLPLSHQTLKGLRDSAFIKMTEIQKMSIPVSLKGHDLLAAAKTGSGKTLAFLIPVIEK 102

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  +          LI+ PTRELA Q  +   K G+  + +  L+IGG   + +  ++ +
Sbjct: 103 LYREKWTEFDGLGALIISPTRELAMQTYEVLTKIGRYTSFSAGLVIGGKEVKFELDRISK 162

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +        L  +N+++LV+DEADR LDMGF   +  I   +P  RQTL
Sbjct: 163 INILVGTPGRILQHMDQAVGLNTSNLQVLVLDEADRCLDMGFKKTLDAIVMNLPPVRQTL 222

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL--- 238
           LFSAT +  L  ++   L + K +        + +         +  S +      +   
Sbjct: 223 LFSATQSQSLADLARLSLTDYKSVGTAEVKDDSNSSATPDTLQQSYISVELPDKLDILFS 282

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL--SNFKEGTI 296
                     I+F +  K V  +  +  K    +  +H +  Q+   +      F     
Sbjct: 283 FIKTHLKCKMIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQH 342

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             + A+D+ ARG+D P V  V   D P   + YIHR+GR+ R G+ GK+  ++  ++ + 
Sbjct: 343 TCLFATDVVARGIDFPAVDWVVQADCPENVDTYIHRVGRSARYGKQGKSLVMLTPQEEEG 402

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ-KSTGFDRRKKNYSS 415
              +++L ++ ++              K+ I Q   +RK +  PQ +S  F   +  Y  
Sbjct: 403 F--LKRLKQRHIEP------------NKLTIKQ---SRKKSIKPQLQSLLFQDPELKYLG 445

Query: 416 QKSHIP------LKESEKISKLQQDIQENDADSLGFRG 447
           QK+ I       +++ +++ K ++   E  A+SLG  G
Sbjct: 446 QKAFISYVRSIFIQKDKEVFKFEELPTEEFANSLGLPG 483


>gi|33519584|ref|NP_878416.1| cold-shock DEAD-box protein A, inducible ATP-independent RNA
           helicase [Candidatus Blochmannia floridanus]
 gi|33517247|emb|CAD83630.1| Cold-shock DEAD-box protein A, inducible ATP-independent RNA
           helicase [Candidatus Blochmannia floridanus]
          Length = 487

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 125/380 (32%), Positives = 208/380 (54%), Gaps = 10/380 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL+  +V  + + GY  P PIQ + IPL+L+  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 7   SFVDLGLNTYIVDMLSNIGYQAPLPIQTQCIPLLLKGCDLLGMAHTGSGKTAAFLLPLLQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  + R      ++      +       +     ++ + +A+L GG  +  Q   L++
Sbjct: 67  NIDIKQ-RFVQGLIIVPTRELAIQIGHVCMYFIKSLSHIINIAVLYGGQNYRIQFNDLKK 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LDH +RG  +     + +IDEAD ML MGFI  I++I   VP  RQT 
Sbjct: 126 NPHIIIGTPGRLLDHLSRGLDISKLKTL-IIDEADEMLRMGFIEDIEHIIRYVPTHRQTA 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   ++K+S  F+ NPK I +N   S    I+  +   +                
Sbjct: 185 LFSATLPVSIRKLSYKFMCNPKEIYINPSISACADIKQSYWLVHGISK---HEALMRFLE 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +  IIF   K   + +   L++ G++  A++G+++Q  R K +S  + GT+ +++ 
Sbjct: 242 VEKFEAVIIFVRTKSATLQISEILQRFGYNSAALNGDMNQSVRCKTISRLRCGTLDILIT 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N+D+P     Y+HRIGRTGRAGR GK+   V +++    + + 
Sbjct: 302 TDVAARGLDINRISFVINYDIPCNYNAYVHRIGRTGRAGRSGKSLLFVERQEYHLFNYV- 360

Query: 362 KLIEKKVDWLNGDLSSLNPP 381
             I+++V  LN ++  +  P
Sbjct: 361 --IKRRV--LNSNIVKVKCP 376


>gi|223056258|gb|ACM80367.1| vasa [Eucidaris tribuloides]
          Length = 498

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 132/387 (34%), Positives = 198/387 (51%), Gaps = 13/387 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  L  KV   VL A Y KPTP+Q   IP++    D+   AQTG+GKTA+F LP+ T
Sbjct: 83  SFDEADLDDKVRANVLKAKYDKPTPVQKYGIPIISAGRDLMACAQTGSGKTAAFXLPIXT 142

Query: 62  ILEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +      V        P T I+ PTRELA Q  +   K+ +   L   ++ GG     Q
Sbjct: 143 GMLTNAGAVSCSNVIQEPLTXIVSPTRELAIQXYNEARKFCRMTTLRPVVVYGGTXVSYQ 202

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             ++++GA +++ TPGR+ D  NRG + +  +  LV+DEADRMLDMGF P IQ +     
Sbjct: 203 MSEVQKGAGIVVATPGRLHDFINRGYIGLGKLCYLVLDEADRMLDMGFGPEIQKLIDHPH 262

Query: 176 FT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTL+FSAT  + +Q+ +  +L +   + V      A  IE           ++
Sbjct: 263 XPKKGDRQTLMFSATFPNXVQERAGMYLNDYLFLXVGRVGGAASDIEQRVFQVEQFAKRE 322

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             +     + Q      ++F   K+N   L   L + GF   +IHG+  Q+ R + L +F
Sbjct: 323 KLMDIL--REQKDDDRTLVFVETKRNADFLASLLSQSGFPTTSIHGDRMQQEREEALHHF 380

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-A 350
             G   ++VA+ +AARGLDIP V HV N+D+P+  + Y+HRIGRTGR G  G++ +   A
Sbjct: 381 XIGKAPILVATSVAARGLDIPGVKHVVNYDLPDVIDEYVHRIGRTGRVGNLGRSTSFYDA 440

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSS 377
            +D     A+ K++      +   L  
Sbjct: 441 GKDASIARALIKVLADAQQDVPEFLEE 467


>gi|169603339|ref|XP_001795091.1| hypothetical protein SNOG_04678 [Phaeosphaeria nodorum SN15]
 gi|118593422|sp|Q0UU86|IF4A_PHANO RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|111067318|gb|EAT88438.1| hypothetical protein SNOG_04678 [Phaeosphaeria nodorum SN15]
          Length = 396

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 208/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L  +++  V   G+ +P+ IQ + I  V++ HDV   AQ+GTGKTA+F +  L 
Sbjct: 24  SFDAMNLKAELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISTLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+  + LIL PTRELA Q+       G   ++     IGG       K L+ 
Sbjct: 84  KIDSN---VKACQALILAPTRELAQQIQKVVVAIGDFMDVACHACIGGTSVRDDMKALQD 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I  L+P + Q +
Sbjct: 141 GPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 201 LLSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEDWKLDT--LSDLYE 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A
Sbjct: 259 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDVIMKEFRSGSSRVLIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 379 QFYSTQIEEMPMNVADL 395


>gi|98986202|dbj|BAE94497.1| Vasa [Polyandrocarpa misakiensis]
          Length = 705

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 130/387 (33%), Positives = 208/387 (53%), Gaps = 11/387 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L   +   V  A Y +PTP+Q  +IP++    D+   AQTG+GKTA+F+LP+L+
Sbjct: 246 NFDEANLPETICANVKKAKYSRPTPVQKYSIPIINADRDLMSCAQTGSGKTAAFLLPVLS 305

Query: 62  ILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            + +   +       + P+ +++ PTREL  Q+     K+     +   +  GG    +Q
Sbjct: 306 GMFRKGLKSDTLSEKQTPQAIVVGPTRELVLQIFLEARKFAYGSVIRPVVAYGGTSVGSQ 365

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---- 171
            + L RG ++LI TPGR+LD  NRGK+    +E L++DEADRMLDMGF P I+ +     
Sbjct: 366 LRDLCRGCNILIATPGRLLDFINRGKVSCECVEYLILDEADRMLDMGFEPEIRRLLGSPG 425

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                +R TL+FSAT  +E+QK++  FL++            A +     +    +  K+
Sbjct: 426 MPDKNSRHTLMFSATFPNEIQKLAHEFLRDDFLFLSVGRVGGACSDVTQTILQVDEEDKR 485

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L+Q L    +T    ++F   K+    L   L ++     +IHG+  QR R   L++F
Sbjct: 486 ETLMQLLSDVAETRSRTLVFVETKRKADFLAAFLSQENLPTTSIHGDRYQREREMALADF 545

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K GT  +M+A+ +AARGLDIP V HV NFD+PN  + ++HR+GRTGR G  G+A +  + 
Sbjct: 546 KSGTCPIMIATSVAARGLDIPKVEHVINFDLPNEIDEFVHRVGRTGRCGNLGQATSFYSD 605

Query: 352 -EDIKHIDAIEKLIEKKVDWLNGDLSS 377
            +D     ++ K++      +   L S
Sbjct: 606 NKDGMLARSLVKVLADAQQEVPEWLES 632


>gi|197100857|ref|NP_001126280.1| ATP-dependent RNA helicase DDX18 [Pongo abelii]
 gi|55730937|emb|CAH92187.1| hypothetical protein [Pongo abelii]
          Length = 670

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 120/392 (30%), Positives = 198/392 (50%), Gaps = 9/392 (2%)

Query: 2   DFADL-GL-SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L  L +   + A+ + G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 178 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPA 237

Query: 60  LTILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K R   R    + IL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 238 VELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK 297

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR + D  N    +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 298 LANGINIIVATPGRLLDDMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTR 357

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T++          S+K  LL  
Sbjct: 358 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLF 417

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 418 TFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSG 477

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
            ++ + +AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 478 TLLCTGVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELG 536

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + D+    +S +   LEK+
Sbjct: 537 FLRYLKQSKVPLSEFDFSWSKISDIQSQLEKL 568


>gi|242008404|ref|XP_002424996.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212508625|gb|EEB12258.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 684

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 134/425 (31%), Positives = 204/425 (48%), Gaps = 44/425 (10%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+++ ++  +   ++ A Y KPTP+Q   IP+++ R D+   AQTG+GKTA+F++P+L 
Sbjct: 242 SFSEIKMTEIISNNIMLARYDKPTPVQKYAIPIIMSRRDLMACAQTGSGKTAAFLVPILN 301

Query: 62  ILEK--------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
            + +           R + P  L+L PTRELA Q+ D   K+     L   ++ GG   +
Sbjct: 302 QMYQRGPQNNRPYSHRKQYPMGLVLAPTRELATQIYDEARKFSYRSRLRPCVVYGGSYLQ 361

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT-- 171
            Q ++LE+G  +L+ TPGR+ D  +R K+ + N + LV+DEADRMLDMGF P I+ I   
Sbjct: 362 DQFRELEKGCHLLVATPGRLADMLDRDKIGLENCKFLVLDEADRMLDMGFEPQIRRIVEK 421

Query: 172 -SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  D +Q    +F                                
Sbjct: 422 DMPRTGERQTLMFSATFPDVIQADKRSF-------------------------------- 449

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
              LL        T    ++F   +K    L   L  QG+ V  IHG   QR R   L  
Sbjct: 450 LLDLLNATRYKNGTESLTLVFVETRKGADCLEEYLHYQGYPVSCIHGERSQREREDALRR 509

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G   ++VA+ +AARGLDI  V HV NFD+P+  E Y+HRIGRTGR G  G A +   
Sbjct: 510 FRSGETPILVATAVAARGLDISHVTHVINFDLPSDIEEYVHRIGRTGRMGNLGVATSFFN 569

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           +++   +  + +L+ +    L   L +    +     ++     K           D R+
Sbjct: 570 EKNRNIVRDLVELLTETNQDLPKWLEAFASDMNAPQTSRRGGGSKTR-FGGGFGARDYRQ 628

Query: 411 KNYSS 415
           ++ S 
Sbjct: 629 QSNSR 633


>gi|307199044|gb|EFN79768.1| DEAD-box helicase Dbp80 [Harpegnathos saltator]
          Length = 473

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 101/393 (25%), Positives = 173/393 (44%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  L L P ++  V   G+  P+ IQ   +P +L     ++   +Q+GTGKTA+FVL M
Sbjct: 87  SFDALHLKPALLKGVYAMGFNAPSRIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 146

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++        P+ L L PT ELA Q  +   K  +                ++  K+
Sbjct: 147 LSRVDTT---KEYPQVLCLSPTYELAIQTGEVAAKMSRYCPEIKIKYAVRGEEISRGSKV 203

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +   L      ++ +    +   G       I  ++P T Q
Sbjct: 204 TEHIIIGTPGKVLDWGQKFKFFDLNKISVFVLDEADVMIATQGHQDQCIRIHKMLPRTCQ 263

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSAT   E+   +E  + NP  I +     + + I+  ++       K  A+    +
Sbjct: 264 MMFFSATYEPEVMNFAEIIVSNPLIIRLLREEESLDNIKQYYIKCKNVDDKYTAIT--NI 321

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   IIFC+ KK    L   + K G +V  + G++    R+ +L  F+ G  +++
Sbjct: 322 YGVITIGQAIIFCHTKKTASWLAEKMTKDGHAVAILSGDLTVEQRISVLDRFRAGLEKVL 381

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           + +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  L+ +  
Sbjct: 382 ITTNVLARGIDVEQVTIVVNFDLPMDQKRQADCETYLHRIGRTGRFGKSGIAINLIDSPH 441

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
            ++    IEK   KK+ +L+ + +     +EKI
Sbjct: 442 AMQLCKDIEKHFGKKIHYLDAEDAD---EIEKI 471


>gi|85860953|ref|YP_463155.1| superfamily II DNA/RNA helicase [Syntrophus aciditrophicus SB]
 gi|85724044|gb|ABC78987.1| superfamily II DNA and RNA helicases [Syntrophus aciditrophicus SB]
          Length = 572

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 125/371 (33%), Positives = 212/371 (57%), Gaps = 8/371 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            FA+  ++  ++  +   G+   TP+Q K IP+VL R  D+ G+AQTGTGKTA+F +P++
Sbjct: 3   TFAEFEINTDIMKGLDGLGFSVMTPVQEKIIPIVLNRQTDLVGLAQTGTGKTAAFGIPLI 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKL 119
            + +    R++  + L+L PTREL  QVA +    G+      +  + GG    +Q ++L
Sbjct: 63  QLTDT---RLKRTQALVLCPTRELCVQVAGDLNLMGRYVQKLKIVPVYGGASIVSQTEEL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GA V++ TPGR+ D   RG + ++ +  +V+DEAD ML MGF   +  I ++ P ++ 
Sbjct: 120 RKGAQVVVATPGRLHDLIRRGAVDLSGVSWVVLDEADEMLQMGFQDELNAILAVTPDSKN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  E+  ++ N++++P  I V   ++ AE ++H     Y   ++      + +
Sbjct: 180 TLLFSATMPREVAAIAANYMKDPLEIIVGRRNAGAENVDH---IYYVVSARHRYQALRRI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     IIFC  +     +   L + G+S  A+HG++ Q  R  ++  F+   I+++
Sbjct: 237 ADMNPELYAIIFCRTRLETREIVDKLIEDGYSADALHGDLSQSQRDHVMHKFRSRNIRML 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+ D+ HV N+ +P  +  Y HR GRTGRAG+ G +  L+   +   I A
Sbjct: 297 VATDVAARGLDVNDLTHVINYSLPEESSGYTHRSGRTGRAGKKGISIALIETREKHKIRA 356

Query: 360 IEKLIEKKVDW 370
           IE+ ++K  + 
Sbjct: 357 IERCLKKNFEE 367


>gi|13542134|ref|NP_111822.1| RNA helicase [Thermoplasma volcanium GSS1]
          Length = 376

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 120/372 (32%), Positives = 194/372 (52%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L  +++ ++   GY +PT +Q   IP+ L   D+   ++TG+GKTA++++P+   
Sbjct: 7   FEEFNLRNELIESIRGTGYSEPTEVQSMAIPIALAGSDLVVRSKTGSGKTAAYLIPI--- 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                A+ +  R LIL PTRELA QVA   E  GK   +   ++ GG+    Q + + RG
Sbjct: 64  -INNTAKEKGIRALILLPTRELAVQVAKVSEALGKRSGIRTVVVYGGVSINKQIELILRG 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A++++ TPGR LD  +RG L  + +   V+DEAD MLDMGFI  I+ I +++P  RQ+ L
Sbjct: 123 ANIIVGTPGRTLDLIDRGILNFDKVSYFVLDEADEMLDMGFIEDIKKIINVLPVERQSFL 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  E+ ++++ F+ N + + ++    T   I            ++          +
Sbjct: 183 FSATIPSEIIELAKGFMHNEEILFLSKDEVTVNGI---DHNYAVSRRERKLRTLFSYIDK 239

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  IIF   K     +  +L   G     +HG++ Q  R K L  FK     L+  +
Sbjct: 240 YKPEKSIIFSRTKAGANMIYEALINHGQDAVIMHGDLTQAQREKALYRFKNFGRFLVATN 299

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
              ARGLDI  +  + N+DVP+    Y+HR+GRT R G  G+AFT+V   +I  ID I  
Sbjct: 300 VA-ARGLDIGGISDIINYDVPDDPRVYVHRVGRTARMGAAGRAFTIVEDREIGSIDMIRH 358

Query: 363 LIEKKVDWLNGD 374
               K+  ++ +
Sbjct: 359 EARVKMKEIHLE 370


>gi|57113867|ref|NP_001008986.1| ATP-dependent RNA helicase DDX3Y [Pan troglodytes]
 gi|51315848|sp|Q6GVM6|DDX3Y_PANTR RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName: Full=DEAD
           box protein 3, Y-chromosomal
 gi|48728366|gb|AAT46349.1| DDX3Y [Pan troglodytes]
          Length = 660

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 131/396 (33%), Positives = 208/396 (52%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ +   ++  +    Y +PTP+Q   IP++  + D+   AQTG+GKTA+F+LP+L+
Sbjct: 179 NFGDIDMGEIIMGNIQLTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILS 238

Query: 62  ILEKGRA---------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
            +                    R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 239 QIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 298

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 299 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 358

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 359 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 418

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +       +L +  T    ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 419 WVEDLDKRSFL--LDILGAAGTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 476

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 477 DREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNL 536

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   +++I     +  L+ +    +   L ++
Sbjct: 537 GLATSFFNEKNINITKDLLDLLVEAKQEVPSWLENM 572


>gi|14325565|dbj|BAB60468.1| ATP-dependent RNA helicase [Thermoplasma volcanium GSS1]
          Length = 373

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 120/372 (32%), Positives = 194/372 (52%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  L  +++ ++   GY +PT +Q   IP+ L   D+   ++TG+GKTA++++P+   
Sbjct: 4   FEEFNLRNELIESIRGTGYSEPTEVQSMAIPIALAGSDLVVRSKTGSGKTAAYLIPI--- 60

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                A+ +  R LIL PTRELA QVA   E  GK   +   ++ GG+    Q + + RG
Sbjct: 61  -INNTAKEKGIRALILLPTRELAVQVAKVSEALGKRSGIRTVVVYGGVSINKQIELILRG 119

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A++++ TPGR LD  +RG L  + +   V+DEAD MLDMGFI  I+ I +++P  RQ+ L
Sbjct: 120 ANIIVGTPGRTLDLIDRGILNFDKVSYFVLDEADEMLDMGFIEDIKKIINVLPVERQSFL 179

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  E+ ++++ F+ N + + ++    T   I            ++          +
Sbjct: 180 FSATIPSEIIELAKGFMHNEEILFLSKDEVTVNGI---DHNYAVSRRERKLRTLFSYIDK 236

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  IIF   K     +  +L   G     +HG++ Q  R K L  FK     L+  +
Sbjct: 237 YKPEKSIIFSRTKAGANMIYEALINHGQDAVIMHGDLTQAQREKALYRFKNFGRFLVATN 296

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
              ARGLDI  +  + N+DVP+    Y+HR+GRT R G  G+AFT+V   +I  ID I  
Sbjct: 297 VA-ARGLDIGGISDIINYDVPDDPRVYVHRVGRTARMGAAGRAFTIVEDREIGSIDMIRH 355

Query: 363 LIEKKVDWLNGD 374
               K+  ++ +
Sbjct: 356 EARVKMKEIHLE 367


>gi|320195643|gb|EFW70268.1| ATP-dependent RNA helicase DbpA [Escherichia coli WV_060327]
          Length = 457

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 209/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +  + T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+  ++C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W     +S   PLE
Sbjct: 357 SDMLQIKLNWQTPPANSSIVPLE 379


>gi|296504780|ref|YP_003666480.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|296325832|gb|ADH08760.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
          Length = 457

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 121/378 (32%), Positives = 205/378 (54%), Gaps = 12/378 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L 
Sbjct: 5   TFTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLN 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNF----EKYGKNYNLTVALLIGGIPFEAQNK 117
            +   R  V++    I  PTRELA Q+ +      +   ++  +T   LIGG   +   +
Sbjct: 65  RINASREEVQLV---ITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIE 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P  
Sbjct: 122 KLKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKN 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +     +    L  
Sbjct: 182 LQMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKH---RNKIDLVH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q      ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 239 KMLLQFKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|295672658|ref|XP_002796875.1| ATP-dependent RNA helicase DED1 [Paracoccidioides brasiliensis
           Pb01]
 gi|226282247|gb|EEH37813.1| ATP-dependent RNA helicase DED1 [Paracoccidioides brasiliensis
           Pb01]
          Length = 683

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 128/393 (32%), Positives = 201/393 (51%), Gaps = 19/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F +  L   ++  ++ + Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+   
Sbjct: 200 FTNPPLHEHLLSNIILSRYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSK 259

Query: 60  ---------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                          GR     P  LIL PTREL +Q+ D   K+     L   ++ GG 
Sbjct: 260 SLEKRGPEGDAPRGLGRQSKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVYGGA 319

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L++G +VL+ TPGR++D   RG++ +++I+ LV+DEADRMLDMGF P I+ I
Sbjct: 320 EMGNQLRQLDQGCNVLVATPGRLVDMMERGRISLSHIQYLVLDEADRMLDMGFEPQIRRI 379

Query: 171 TSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                   +      +FSAT   ++QK++E FL++   + V    ST+E           
Sbjct: 380 VQGSDMPDKHFRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSEN--ITQRVIEC 437

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              K        +   D+    ++F   K+    L   L        AIHG+  QR R +
Sbjct: 438 DSDKDKDSALLDILCSDSTGLTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERER 497

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G   ++VA+ +AARGLDIP+V HV N+D+PN  ++Y+HRIGRTGRAG  G + 
Sbjct: 498 ALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGLST 557

Query: 347 TLVAK-EDIKHIDAIEKLIEKKVDWLNGDLSSL 378
              ++ ++ K   ++  L++     +   L  L
Sbjct: 558 AFFSRSKNFKIARSMVDLLKDANQEVPDFLEKL 590


>gi|209881955|ref|XP_002142415.1| DEAD/DEAH box ATP-dependent RNA helicase [Cryptosporidium muris
           RN66]
 gi|209558021|gb|EEA08066.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Cryptosporidium
           muris RN66]
          Length = 506

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 119/391 (30%), Positives = 195/391 (49%), Gaps = 8/391 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F    +  ++  A+ D      T IQ K+IP +L+  DV G A+TG+GKT +F++P +
Sbjct: 13  VSFEQSAICDQLKRALKDMNITTMTEIQAKSIPRILEGKDVLGTAKTGSGKTLAFLVPAV 72

Query: 61  TILEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L       R    +I + PTREL+ Q+ +   +  K    T  L+IGG     +  KL
Sbjct: 73  NLLYNVEFLPRNGTGVIVISPTRELSLQIYEVCRELCKYLPQTHGLVIGGANRRNEADKL 132

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEIL-VIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +G ++LI TPGR+LDH    K       +  +IDEADR+L++GF   +  I  L+P  R
Sbjct: 133 NKGVNILIATPGRLLDHLQNTKGFQYGNLLSLIIDEADRILEIGFEEEMNQIIKLLPVKR 192

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT LFSAT T ++  +    L+NP  I+  T ++ A           A  ++   LL   
Sbjct: 193 QTSLFSATQTTKVADLVRLSLRNPVLIKCKTSNTAATVSGLEQGYVIASANE-RFLLLYT 251

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++     ++F +   +             S  +IHG   Q SRM+    F      L
Sbjct: 252 FLKKNRENKVMVFFSSCMSTKFHEELFNYVDLSCSSIHGKKKQSSRMQTYYEFCSSEKGL 311

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R A   GKA   +  E+I+ +
Sbjct: 312 LLCTDVAARGLDIPNVDWIIQYDPPDDPKEYIHRVGRTARGANGTGKALLFLLPEEIQFL 371

Query: 358 DAIEKLIEKKVDWL---NGDLSSLNPPLEKI 385
             ++K +   ++        ++++   LE++
Sbjct: 372 QYLKK-MNIPLNEYAFSKNKIANVQNQLERL 401


>gi|327329925|gb|EGE71679.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL097PA1]
          Length = 564

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 139/448 (31%), Positives = 223/448 (49%), Gaps = 20/448 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L 
Sbjct: 54  SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 113

Query: 62  ILEKGRARVR-------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L++ PTRELA QV+ +           V  + GG+ +E+
Sbjct: 114 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGARVLTVYGGVGYES 173

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L+ G DV++ TPGR+LD   R  L ++++ I+V+DEAD MLD+GF+P ++N+    
Sbjct: 174 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 233

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P +RQT+LFSATM   +                   + T  T+       Y  +      
Sbjct: 234 PASRQTMLFSATMPAPI-MALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIE 292

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +   + ++  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+ G
Sbjct: 293 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 352

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   D+
Sbjct: 353 EATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADV 412

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                I K +  +          L+ P+E    + H +   +  IP+ + G     +  +
Sbjct: 413 TRWKLINKALNLE----------LSEPVETYSTSPHLYT--DLDIPEDAQGQIVDLEKAA 460

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADS 442
           ++K     +     S  ++  + +  D+
Sbjct: 461 TEKKRRQHRHGHDGSHHEKATRRHSRDA 488


>gi|329115610|ref|ZP_08244332.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
 gi|326695038|gb|EGE46757.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
          Length = 400

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 122/403 (30%), Positives = 184/403 (45%), Gaps = 12/403 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL P +      AG   PTP+Q   IP +L   DV   A TGTGKTA++ LP+  
Sbjct: 4   SFHDLGLDPALCAHAQQAGMAAPTPVQQAAIPAILDGKDVLVRAPTGTGKTAAYALPLSQ 63

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +     V +P   ++    ++     +  +K  K   +T+  L GG     Q  
Sbjct: 64  KLLKSRKPRFVLVLVPTRELVLQVEKVFRTCLEESKKGQKQTAVTLVPLFGGSDRAEQEH 123

Query: 118 K--LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
                 G  +LI TPGR+LD  +     ++    LV+DE DR+    F    + + S +P
Sbjct: 124 FLAQATGRRILIATPGRLLDFVSNRICDLSECGYLVLDEGDRLFSPEFQEDTETLLSYLP 183

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTL+ SAT  + L+    N L  P  I +         I    +             
Sbjct: 184 SMRQTLVLSATQPESLKSTLLNLLHKPVEISIEQAPQKRGPIRQAALFLDPSQK---PGF 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +   S+      IIF   K     L   L+K   +   +HG+I Q  R   +++F+ G 
Sbjct: 241 IKEFFSRAPKMRSIIFVRTKAEADQLAAILKKARLAAAPLHGDIAQDKRTSTVASFESGR 300

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGLD+P V  V N+DVP++ E Y+HRIGRTGR G  G A TL   +D K
Sbjct: 301 LFILVATDVAARGLDVPSVKQVINYDVPDQPETYLHRIGRTGRGGEKGSALTLCTMDDRK 360

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398
            +  IE   + K+  ++ + +    P+ K   A    ++   P
Sbjct: 361 SLRQIEVGAQVKLRIISAEQA---LPVAKPPQAASRRSKSVRP 400


>gi|299782998|gb|ADJ40996.1| ATP-dependent RNA helicase [Lactobacillus fermentum CECT 5716]
          Length = 395

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 115/399 (28%), Positives = 189/399 (47%), Gaps = 7/399 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL L+  +  A+ D  + +PT +Q + IPL+L    V G ++TG+GKT +F+LP+ +
Sbjct: 4   SFADLHLADFLTPALKDLHFERPTAVQARVIPLILNGKSVVGQSRTGSGKTHAFLLPIFS 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L      V+   T             A    ++          + G        +   R
Sbjct: 64  QLAPNNQTVQAVITTPSRELAYQIYNAAKQLNRFATTPLTIHNYVGGTDKEHQVEQLNRR 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD  N   L ++     VIDEAD  LDMGF+  +  I +  P   Q +
Sbjct: 124 QPQLVIGTPGRILDLINSQALDIHTASQFVIDEADMTLDMGFLETVDQIAARFPEKLQMM 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+   L+   + +L+NP   E+ T +     +E+  ++T  +             +
Sbjct: 184 VFSATIPQGLRPFLKKYLENPVIEEIPTETVINPNVENWLMSTKGRDKNDLVYRLL---T 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F N +     L + L+++G  V  IHG ++ R+R + +   ++   Q +VA
Sbjct: 241 LGDPYLALVFANTRDRATELANYLQERGLKVALIHGGLEPRARKRTMRQIRDMDYQYIVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+D+  V  V N D+P+  E +IHR+GRTGRA   G A TL A  +   I  +E
Sbjct: 301 TDLAARGIDLEGVSLVLNDDIPSDLEYFIHRVGRTGRANMAGTAITLYAPAEDVLIXKLE 360

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
              E+ + ++  DL +    +   D  +    R+    P
Sbjct: 361 ---ERGITFIPKDLKNGRI-VTTYDRNRRKAHRRKEGGP 395


>gi|315045858|ref|XP_003172304.1| ATP-dependent RNA helicase DBP10 [Arthroderma gypseum CBS 118893]
 gi|311342690|gb|EFR01893.1| ATP-dependent RNA helicase DBP10 [Arthroderma gypseum CBS 118893]
          Length = 940

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 128/406 (31%), Positives = 203/406 (50%), Gaps = 41/406 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+P ++ A+   G+  PTPIQ KTIPL+L   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 94  FQAMGLNPNLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 153

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +V   R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 154 LKNHSTKVGA-RGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMAGN 212

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I   V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 213 PDIIIATPGRFLHLKVEMSLDLSSIRYAVFDEADRLFEMGFAAQLTEILHALPSSRQTLL 272

Query: 183 FSATMTDELQKV----------------------------------------SENFLQNP 202
           FSAT+   L +                                                 
Sbjct: 273 FSATLPKSLVEFARAGLQEPVLIRLDADSKISPDLQSAFFTVKSADKEGALLHILHDLIK 332

Query: 203 KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLC 262
                      A+   H      ++  K+  +  Q      T  + I+F   K +V  + 
Sbjct: 333 IPTGETEAGKLAKKETHEAKQGTSKKRKRSDMKGQGAHGTPTEHSTIVFVATKHHVEYIA 392

Query: 263 HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322
           + L   GF+V   +G+++Q +R   + NF+ G   ++V +D+AARG+DIP + +V N+D 
Sbjct: 393 NLLRHSGFAVSYAYGSLNQTARKIQVQNFRAGISNILVVTDVAARGIDIPVLANVINYDF 452

Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           P++ + YIHR+GRT RAG+ G +++LV   D  ++  ++  + +K+
Sbjct: 453 PSQPKIYIHRVGRTARAGQKGWSYSLVRDSDAPYLIDLQLFLGRKL 498


>gi|169617257|ref|XP_001802043.1| hypothetical protein SNOG_11806 [Phaeosphaeria nodorum SN15]
 gi|160703370|gb|EAT80850.2| hypothetical protein SNOG_11806 [Phaeosphaeria nodorum SN15]
          Length = 1091

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 130/432 (30%), Positives = 204/432 (47%), Gaps = 25/432 (5%)

Query: 1    MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            + FA + ++P +V ++      +PT IQ   IP +L+  D  G ++TGTGKT +F +P+L
Sbjct: 660  VSFASIDVAPWLVASLASMEIKRPTGIQKACIPEILKGRDCIGGSRTGTGKTVAFSVPIL 719

Query: 61   TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                +          LI+ PTRELA Q+ +  +      ++   L+ GG     Q   L 
Sbjct: 720  QKWAE---DPSGIFGLIITPTRELAIQIYEQVKAISAPQSMKPILVTGGSDQREQAIALA 776

Query: 121  RGADVLICTPGRILDHFN----RGKLLMNNIEILVIDEADRMLDMG---FIPYIQNITSL 173
                V+I TPGR+ +H           +  +  +V DEADR+L  G    IP I+   S+
Sbjct: 777  SRPHVVIATPGRLAEHIKTSGEDTICGLRRVRFVVFDEADRLLAPGRGSMIPDIETCLSV 836

Query: 174  VPFTRQTLL--FSATMTDEL----QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
            +P   Q     F+AT+T E+     +            EV+T +                
Sbjct: 837  LPPKEQRQTLLFTATVTPEVLALKSQPRAPGRLPIFVCEVDTETLATPASLSQLYLQTPV 896

Query: 228  YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
              K+C L   LL   +  K+ IIFCN+ K    L + L      V A+H  + Q+ R+  
Sbjct: 897  THKECYLHVLLLTPLNLTKSVIIFCNRTKTATLLEYMLRMLDHRVTALHSGLKQQDRISN 956

Query: 288  LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
            L+ F+    +++VA+D+AARGLDIP+VG V NFDVP   ++YIHR+GRT RAGR G + T
Sbjct: 957  LARFRAQAARILVATDVAARGLDIPEVGLVVNFDVPRDPDDYIHRVGRTARAGRPGNSVT 1016

Query: 348  LVAKEDIKHIDAIEKLIEKKVDWLNGD---------LSSLNPPLEKIDIAQHNHARKNNP 398
             + + D++ + AIE+ +  K+     +           +L    EK   A  N     + 
Sbjct: 1017 FIGQRDVELVLAIEERVGGKMSEFEEEGVSVEGRVVRDALKIVTEKKREALLNIEEGRDV 1076

Query: 399  IPQKSTGFDRRK 410
               +  G  +R+
Sbjct: 1077 KGNRMVGMKKRR 1088


>gi|156064101|ref|XP_001597972.1| hypothetical protein SS1G_00058 [Sclerotinia sclerotiorum 1980]
 gi|160380631|sp|A7E436|DBP8_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp8
 gi|154690920|gb|EDN90658.1| hypothetical protein SS1G_00058 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 540

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 123/430 (28%), Positives = 197/430 (45%), Gaps = 19/430 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L + P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F +P+L 
Sbjct: 112 TFAALDVKPWLVASLGAMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQ 171

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +          L+L PTRELA Q+ + F+      +L   L+ GG     Q   L +
Sbjct: 172 KWAE---DPFGIFALVLTPTRELALQIYEQFKAISSPQSLKAVLITGGSDMRPQATALAQ 228

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM--------GFIPYIQNITSL 173
              V+I TPGR+ DH              V        D           +P ++   SL
Sbjct: 229 RPHVVIATPGRLADHIRTSGEDTVCALRRVRMVVLDEADRLLASGSVGSMLPDVEECLSL 288

Query: 174 VPFTRQTLL--FSATMTDELQ----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           +P   +     F+AT+T E++                 EV+T +    +  +        
Sbjct: 289 LPPPSERQTLLFTATVTPEVRALKDMPRTLGKPPVFVCEVDTQALAIPSSLNQMHLQVPV 348

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             ++  L   LL  ++  K+ +IFCN+      L H L      V A+H  + QR R+  
Sbjct: 349 THREHYLHMFLLTEKNLPKSIVIFCNRTATADYLTHLLRLLEHRVTALHSKLPQRQRIDN 408

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L  F+    +++VA+D+AARGLDIP+VG V N+DVP   ++YIHR+GRT RAGR G+A T
Sbjct: 409 LGRFRASAARILVATDVAARGLDIPEVGLVINYDVPRDPDDYIHRVGRTARAGRKGEAVT 468

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPL--EKIDIAQHNHARKNNPIPQKSTG 405
            V + D++ I AIEK + ++++    +  +L   +  E + +           I +    
Sbjct: 469 FVGQRDVQLILAIEKRVGRQMEAWTEEGVNLETRVIRESLKLVGEKKREAMLEIEEGREV 528

Query: 406 FDRRKKNYSS 415
             +RK+    
Sbjct: 529 GGKRKRGMKK 538


>gi|118578051|sp|Q0U8V9|DBP8_PHANO RecName: Full=ATP-dependent RNA helicase DBP8
          Length = 508

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 130/432 (30%), Positives = 204/432 (47%), Gaps = 25/432 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA + ++P +V ++      +PT IQ   IP +L+  D  G ++TGTGKT +F +P+L
Sbjct: 77  VSFASIDVAPWLVASLASMEIKRPTGIQKACIPEILKGRDCIGGSRTGTGKTVAFSVPIL 136

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               +          LI+ PTRELA Q+ +  +      ++   L+ GG     Q   L 
Sbjct: 137 QKWAE---DPSGIFGLIITPTRELAIQIYEQVKAISAPQSMKPILVTGGSDQREQAIALA 193

Query: 121 RGADVLICTPGRILDHFN----RGKLLMNNIEILVIDEADRMLDMG---FIPYIQNITSL 173
               V+I TPGR+ +H           +  +  +V DEADR+L  G    IP I+   S+
Sbjct: 194 SRPHVVIATPGRLAEHIKTSGEDTICGLRRVRFVVFDEADRLLAPGRGSMIPDIETCLSV 253

Query: 174 VPFTRQTLL--FSATMTDEL----QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           +P   Q     F+AT+T E+     +            EV+T +                
Sbjct: 254 LPPKEQRQTLLFTATVTPEVLALKSQPRAPGRLPIFVCEVDTETLATPASLSQLYLQTPV 313

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             K+C L   LL   +  K+ IIFCN+ K    L + L      V A+H  + Q+ R+  
Sbjct: 314 THKECYLHVLLLTPLNLTKSVIIFCNRTKTATLLEYMLRMLDHRVTALHSGLKQQDRISN 373

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L+ F+    +++VA+D+AARGLDIP+VG V NFDVP   ++YIHR+GRT RAGR G + T
Sbjct: 374 LARFRAQAARILVATDVAARGLDIPEVGLVVNFDVPRDPDDYIHRVGRTARAGRPGNSVT 433

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGD---------LSSLNPPLEKIDIAQHNHARKNNP 398
            + + D++ + AIE+ +  K+     +           +L    EK   A  N     + 
Sbjct: 434 FIGQRDVELVLAIEERVGGKMSEFEEEGVSVEGRVVRDALKIVTEKKREALLNIEEGRDV 493

Query: 399 IPQKSTGFDRRK 410
              +  G  +R+
Sbjct: 494 KGNRMVGMKKRR 505


>gi|317047085|ref|YP_004114733.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp.
           At-9b]
 gi|316948702|gb|ADU68177.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
          Length = 459

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 201/371 (54%), Gaps = 9/371 (2%)

Query: 3   FADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + G+   TPIQ   +P +LQ  DV   A+TG+GKTA+F + +L 
Sbjct: 4   FSTLTQLPASQLDNLREMGFDAMTPIQAAALPAILQGRDVRAQAKTGSGKTAAFGIGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++  +      + L+L PTRELA QV++   +  +       L +  G P  AQ   L 
Sbjct: 64  RIDNSQ---FHTQALVLCPTRELADQVSNVLRQLARFTRNIKILTLCGGQPMSAQRDSLV 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILDH  R  L +N ++ LV+DEADRML+MGF   ++ I    P  RQT
Sbjct: 121 HAPHIVVGTPGRILDHLKRDNLDLNQLQTLVLDEADRMLEMGFRDDMEAIIGFTPAARQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D +        +  +R  +   + T   +           + +   L   L 
Sbjct: 181 LLFSATWPDTIAS----LSERYQRDALAVATETEAELPAIEQRFIEVSASERTNLLSALL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN K+   ++  +L  +  S  A+HG+++QR R ++L  F  G+I++++
Sbjct: 237 SQQQPTSCVVFCNTKRECDDIAAALNDRQISALALHGDLEQRDRERVLIRFANGSIRVLI 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+ +    E ++HRIGRTGRAG  G A + VA +++    A+
Sbjct: 297 ATDVAARGLDIKSLALVVNYHLAWDPEVHLHRIGRTGRAGESGLAVSFVAADEMARAHAL 356

Query: 361 EKLIEKKVDWL 371
           E  +++ ++W+
Sbjct: 357 EDYLQQSLNWV 367


>gi|194433859|ref|ZP_03066133.1| ATP-independent RNA helicase DbpA [Shigella dysenteriae 1012]
 gi|194417962|gb|EDX34057.1| ATP-independent RNA helicase DbpA [Shigella dysenteriae 1012]
 gi|320180214|gb|EFW55149.1| ATP-dependent RNA helicase DbpA [Shigella boydii ATCC 9905]
          Length = 457

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 131/383 (34%), Positives = 207/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSTRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++  ++W    ++S   PLE
Sbjct: 357 SDMLQITLNWQTPPVNSSIVPLE 379


>gi|30264357|ref|NP_846734.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47529804|ref|YP_021153.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187184|ref|YP_030436.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|49481294|ref|YP_038344.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141217|ref|YP_085615.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus E33L]
 gi|65321660|ref|ZP_00394619.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|118479458|ref|YP_896609.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|165872088|ref|ZP_02216728.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167634514|ref|ZP_02392834.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|167638543|ref|ZP_02396819.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170687333|ref|ZP_02878550.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|190566188|ref|ZP_03019107.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|196034885|ref|ZP_03102292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196041643|ref|ZP_03108935.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|196046361|ref|ZP_03113587.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|218905422|ref|YP_002453256.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|225866267|ref|YP_002751645.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227817061|ref|YP_002817070.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228916918|ref|ZP_04080480.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929329|ref|ZP_04092354.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935605|ref|ZP_04098420.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947999|ref|ZP_04110285.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228987535|ref|ZP_04147654.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229123824|ref|ZP_04253018.1| ATP-dependent RNA helicase yqfR [Bacillus cereus 95/8201]
 gi|229157899|ref|ZP_04285973.1| ATP-dependent RNA helicase yqfR [Bacillus cereus ATCC 4342]
 gi|229186526|ref|ZP_04313688.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BGSC 6E1]
 gi|229604072|ref|YP_002868575.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254684044|ref|ZP_05147904.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254721878|ref|ZP_05183667.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. A1055]
 gi|254736393|ref|ZP_05194099.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254741430|ref|ZP_05199117.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Kruger B]
 gi|254753933|ref|ZP_05205968.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Vollum]
 gi|254757805|ref|ZP_05209832.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Australia 94]
 gi|301055779|ref|YP_003793990.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus anthracis
           CI]
 gi|30259015|gb|AAP28220.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47504952|gb|AAT33628.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49181111|gb|AAT56487.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|49332850|gb|AAT63496.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974686|gb|AAU16236.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           E33L]
 gi|118418683|gb|ABK87102.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis str. Al Hakam]
 gi|164712219|gb|EDR17756.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167513391|gb|EDR88761.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|167529966|gb|EDR92701.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170668528|gb|EDT19274.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|190563107|gb|EDV17073.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|195992424|gb|EDX56385.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196022831|gb|EDX61512.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|196027631|gb|EDX66246.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|218539590|gb|ACK91988.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|225787455|gb|ACO27672.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227005061|gb|ACP14804.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228596957|gb|EEK54615.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BGSC 6E1]
 gi|228625558|gb|EEK82311.1| ATP-dependent RNA helicase yqfR [Bacillus cereus ATCC 4342]
 gi|228659645|gb|EEL15291.1| ATP-dependent RNA helicase yqfR [Bacillus cereus 95/8201]
 gi|228772267|gb|EEM20714.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228811689|gb|EEM58024.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228824045|gb|EEM69862.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830343|gb|EEM75955.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842742|gb|EEM87828.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268480|gb|ACQ50117.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|300377948|gb|ADK06852.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           biovar anthracis str. CI]
          Length = 436

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 115/375 (30%), Positives = 202/375 (53%), Gaps = 6/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L 
Sbjct: 5   TFTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLN 64

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  GR  V+ +      E  +++  ++    +   ++  +T   LIGG   +   +KL+
Sbjct: 65  RINPGREEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   Q 
Sbjct: 125 KQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +     +    L   + 
Sbjct: 185 LVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKH---RNKIDLVNKML 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q +V
Sbjct: 242 LQFKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +D++
Sbjct: 302 ATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEALDSL 361

Query: 361 EKLIEKKVDWLNGDL 375
           EK  ++ +++ + DL
Sbjct: 362 EK--QRHIEFKHVDL 374


>gi|291239093|ref|XP_002739459.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Saccoglossus
           kowalevskii]
          Length = 851

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 122/366 (33%), Positives = 202/366 (55%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V+  +   GY  PTPIQ K +P+++ R DV  +A+TG+GKTA+F++PM   
Sbjct: 80  FQAMGLSMGVLKGIFRKGYKVPTPIQRKCVPIIMDRKDVVAMARTGSGKTAAFLIPMFEK 139

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L++  A+    R LIL PTRELA Q      + GK   L  A+++GG   + Q   L   
Sbjct: 140 LQRHSAKTGA-RALILSPTRELAVQTLKFTRELGKFLGLRSAVILGGDKMDDQFAALHEN 198

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR+L       L +N++E +V DEADR+ +MGF   ++ I   +P  RQTLL
Sbjct: 199 PDIIIATPGRLLHVLVEMDLKLNSLEYVVFDEADRLFEMGFAEQLEEIIQRLPDDRQTLL 258

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   L +P  I ++  S  ++ +      +     K   LL  L    
Sbjct: 259 FSATLPKLLVEFARAGLNDPMLIRLDVESKLSDQL-KLAFFSTRADDKISLLLHLLRNVI 317

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  +IF     +V  +   L + G + C I+ ++D  +R   ++ F      +M+ +
Sbjct: 318 KPSEQTVIFLATMHHVDYIKEILTQAGINCCHIYSSLDPAARKINVAKFTHKKAMVMLVT 377

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP + +V NF+ P + + ++HR+GR  RAGR G A++L+A +++ ++  +  
Sbjct: 378 DVAARGIDIPLLDNVINFNFPAKPKLFVHRVGRVARAGRTGTAYSLIASDELPYLLDLHL 437

Query: 363 LIEKKV 368
            + + +
Sbjct: 438 FLGRPL 443


>gi|299890868|ref|NP_001177715.1| ATP-dependent RNA helicase DDX19B isoform 1 [Mus musculus]
 gi|26328931|dbj|BAC28204.1| unnamed protein product [Mus musculus]
          Length = 494

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 102/382 (26%), Positives = 174/382 (45%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL +
Sbjct: 108 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAV 167

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      +      L PT ELA Q     E+ GK Y               + +K+
Sbjct: 168 LSQVEPANKFAQCLC---LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKV 224

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 225 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 284

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V    +  K        L
Sbjct: 285 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREEK--FQALCNL 342

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 343 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 402

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 403 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 462

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 463 SMNILNRIQEHFNKKIERLDTD 484


>gi|26986593|ref|NP_758488.1| ATP-dependent RNA helicase DDX19B isoform 2 [Mus musculus]
 gi|19344043|gb|AAH25594.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b [Mus musculus]
 gi|74184696|dbj|BAE27953.1| unnamed protein product [Mus musculus]
 gi|148679534|gb|EDL11481.1| mCG133615, isoform CRA_a [Mus musculus]
          Length = 479

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 102/382 (26%), Positives = 174/382 (45%), Gaps = 14/382 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL +
Sbjct: 93  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAV 152

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      +      L PT ELA Q     E+ GK Y               + +K+
Sbjct: 153 LSQVEPANKFAQCLC---LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKV 209

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 210 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 269

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V    +  K        L
Sbjct: 270 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREEK--FQALCNL 327

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 328 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 387

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 388 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 448 SMNILNRIQEHFNKKIERLDTD 469


>gi|254582647|ref|XP_002499055.1| ZYRO0E02530p [Zygosaccharomyces rouxii]
 gi|238942629|emb|CAR30800.1| ZYRO0E02530p [Zygosaccharomyces rouxii]
          Length = 556

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 103/439 (23%), Positives = 178/439 (40%), Gaps = 16/439 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F DL        +++  ++D  + +PTPIQ + IPL L   D+   A TG+GKT +F++
Sbjct: 117 SFEDLISRFSFDKRLLNNLIDNDFTEPTPIQCEGIPLALHGRDLLSCAPTGSGKTLAFLI 176

Query: 58  PMLTILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
           P+L  +   +        +  P   +   T     +++       K       L      
Sbjct: 177 PLLQQIIDSKDVQGLKGLIISPTKELASQTFVECVKLSRKIFLDKKRPLQVAILSKSLSA 236

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
                   ++  D++I TP R++D      L ++N+  LV DEAD++ D  F+    +I 
Sbjct: 237 KLRNKVVSDKKYDIIISTPLRLIDLVKNEALDLSNVRHLVFDEADKLFDKTFVEQTDDIL 296

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     R      +       +     +       +      A       +        K
Sbjct: 297 SACSDPRLRKSMFSATIPSNVEEIAQSIMTDPVRVIIGHKEGANANIDQRLVYCGNEEGK 356

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              +++++Q  +     IIF         L H L   G +V  +H    Q  R KI+  F
Sbjct: 357 LIAIRRMVQEGEFKPPVIIFLESITRAKALYHELMYDGLNVDVLHAERTQMQRDKIIERF 416

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G +  ++ +D+ ARG+D   +  V N+DVP  A+ Y+HRIGRTGR  R GKA T   +
Sbjct: 417 KTGDLWCLICTDVLARGIDFKGINLVVNYDVPQTAQAYVHRIGRTGRNNRQGKAVTYYTR 476

Query: 352 EDIKHIDAIEKLIEKK----VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           +D   I  I  ++ +      +W++  +S L+   EK  + +       NPI        
Sbjct: 477 QDSLAIKPIINVMRQSGCEVAEWMD-KISKLSK-REKESLRKGKSRVDRNPISTVPKVDK 534

Query: 408 RRKKNYSSQKSHIPLKESE 426
            ++K   S       ++ +
Sbjct: 535 LKRKRRQSMIGASKRRKQQ 553


>gi|148687811|gb|EDL19758.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Mus musculus]
          Length = 855

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 126/366 (34%), Positives = 185/366 (50%), Gaps = 23/366 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   
Sbjct: 99  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 158

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 159 LKARSAQTGA-RALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHEN 217

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR++       L + ++E +V DEADR+ +MGF   +Q I   +P   QT+L
Sbjct: 218 PDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVL 277

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L                       E           + +K   LL  L    
Sbjct: 278 FSATLPKLL----------------------VEFARAGSFLLVREDTKAAVLLYLLQNVV 315

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   K +   L   L  QG S   I+  +DQ +R   L+ F       ++ +
Sbjct: 316 RPQDQTVVFVATKHHAEYLTELLMGQGVSCAHIYSALDQTARKINLAKFTHNKCSTLIVT 375

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA +++ ++  +  
Sbjct: 376 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHL 435

Query: 363 LIEKKV 368
            + + V
Sbjct: 436 FLGRSV 441


>gi|148992424|ref|ZP_01822119.1| peptide chain release factor 2 [Streptococcus pneumoniae SP9-BS68]
 gi|168488430|ref|ZP_02712629.1| ATP-dependent RNA helicase [Streptococcus pneumoniae SP195]
 gi|147928741|gb|EDK79754.1| peptide chain release factor 2 [Streptococcus pneumoniae SP9-BS68]
 gi|183573033|gb|EDT93561.1| ATP-dependent RNA helicase [Streptococcus pneumoniae SP195]
 gi|332073114|gb|EGI83593.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA17570]
          Length = 447

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 201/452 (44%), Gaps = 43/452 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +   +  +
Sbjct: 61  QQLDEASDSVQAV---ITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T             
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYWL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  +    +
Sbjct: 237 --TQLMQPYLAMIFVNTKTRADELHSYLTSQGLKVAKIHGDIAPRERKRIMNQVQNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL-------------------------IEKKVDWLNGDLSSL---------NPPLE 383
             +EKL                          EKK D L+ ++  L             +
Sbjct: 355 RELEKLGIKFSPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKKKKVKPGYKK 414

Query: 384 KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           KI  A     RK      ++ G   RK    +
Sbjct: 415 KIQWAVDEKRRKTKRAENRARGRAERKAKRQT 446


>gi|326478694|gb|EGE02704.1| ATP-dependent RNA helicase has1 [Trichophyton equinum CBS 127.97]
          Length = 568

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 117/400 (29%), Positives = 199/400 (49%), Gaps = 13/400 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL LS   V A+   G+   T IQ + IP  L   D+ G A+TG+GKT +F++P + 
Sbjct: 91  KFSDLSLSEPTVKAIAGMGFTTMTEIQQRGIPPSLAGRDILGAAKTGSGKTLAFLIPAVE 150

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL   + + R      I+ PTRELA Q+     +  ++++ T  ++IGG    A+ +KL 
Sbjct: 151 ILRSLKFKPRNGTGALIITPTRELALQIFGVARELMEHHSQTYGVVIGGANRRAEAEKLN 210

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G +VLI TPGR +    +    +  N++ LVIDEADR+L++GF   ++ I S++P   +
Sbjct: 211 KGVNVLIGTPGRLLDHLRSTEGFVFKNLKTLVIDEADRILEVGFEDELRQIISILPKDDR 270

Query: 180 TLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             + FSAT T +++ ++   L+               T++          + K  LL   
Sbjct: 271 QTMLFSATQTTKVEDLARISLKPGPLYINVDHKKEHSTVDGVEQGFIICEAHKRFLLLFS 330

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +   +V      L      V ++HG + Q+ R      F       
Sbjct: 331 FLKKNAKKKIIVFFSSCNSVKYYSELLNYIDLPVLSLHGKLKQQKRTNTFFEFCNSAQGT 390

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V ++   D P+   +YIHR+GRT R  G+ G++   +   ++   
Sbjct: 391 LICTDVAARGLDIPAVDYIVQLDPPDDPRDYIHRVGRTARGKGKVGRSLMFLQPSEVGF- 449

Query: 358 DAIEKLIEKKVDWLNGDLS-----SLNPPLEKIDIAQHNH 392
             I  L E +V  +  +       ++   LEK+ I+Q+ +
Sbjct: 450 --INHLREARVPVVEFEFPTKHIINIQSQLEKL-ISQNYY 486


>gi|315047684|ref|XP_003173217.1| ATP-dependent RNA helicase has1 [Arthroderma gypseum CBS 118893]
 gi|311343603|gb|EFR02806.1| ATP-dependent RNA helicase has1 [Arthroderma gypseum CBS 118893]
          Length = 567

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 117/400 (29%), Positives = 199/400 (49%), Gaps = 13/400 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL LS   V A+   G+   T IQ + IP  L   D+ G A+TG+GKT +F++P + 
Sbjct: 89  KFSDLSLSEPTVKAIAGMGFTTMTEIQQRGIPPSLAGRDILGAAKTGSGKTLAFLIPAVE 148

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL   + + R      I+ PTRELA Q+     +  ++++ T  ++IGG    A+ +KL 
Sbjct: 149 ILRSLKFKPRNGTGALIITPTRELALQIFGVARELMEHHSQTYGVVIGGANRRAEAEKLN 208

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G +VLI TPGR +    +    +  N++ LVIDEADR+L++GF   ++ I S++P   +
Sbjct: 209 KGVNVLIGTPGRLLDHLRSTEGFVFKNLKTLVIDEADRILEVGFEDELRQIISILPKDDR 268

Query: 180 TLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             + FSAT T +++ ++   L+               T++          + K  LL   
Sbjct: 269 QTMLFSATQTTKVEDLARISLKPGPLYINVDHKKEHSTVDGVEQGFIICEAHKRFLLLFS 328

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +   +V      L      V ++HG + Q+ R      F       
Sbjct: 329 FLKKNAKKKIIVFFSSCNSVKYYSELLNYIDLPVLSLHGKLKQQKRTNTFFEFCNSAQGT 388

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V ++   D P+   +YIHR+GRT R  G+ G++   +   ++   
Sbjct: 389 LICTDVAARGLDIPAVDYIVQLDPPDDPRDYIHRVGRTARGKGKVGRSLMFLQPSEVGF- 447

Query: 358 DAIEKLIEKKVDWLNGDLS-----SLNPPLEKIDIAQHNH 392
             I  L E +V  +  +       ++   LEK+ I+Q+ +
Sbjct: 448 --INHLREARVPVVEFEFPTKHIINIQSQLEKL-ISQNYY 484


>gi|315612843|ref|ZP_07887754.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis ATCC 49296]
 gi|315314953|gb|EFU62994.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis ATCC 49296]
          Length = 447

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 127/451 (28%), Positives = 203/451 (45%), Gaps = 28/451 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +V A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKKFQFKNYIVEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +   +  +
Sbjct: 61  QQLDETSDSVQAV---ITAPSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  VIDEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVIDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +          
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 237 --TQLMQPYLAMIFVNTKTRADELHAYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWLNGD-----------LSSLNPPLEKIDIAQ--------HNHARKNNP 398
             +EKL  K +  +  D            ++     +K+DI                   
Sbjct: 355 LELEKLGIKFIPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKKKKVKPGYKK 414

Query: 399 IPQKSTGFDRRKKNYSSQKSHIPLKESEKIS 429
             Q +    RRK   +  ++    +   K  
Sbjct: 415 KIQWAVDEKRRKTKRAENRARGRAERKAKRQ 445


>gi|322818915|gb|EFZ26192.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 794

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 120/376 (31%), Positives = 194/376 (51%), Gaps = 17/376 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL + P +   V   GY +PTP+Q   IP+ L   D+   AQTG+GKTA+F++P++ 
Sbjct: 340 SFEDLYVEPALALNVAKCGYKQPTPVQRYGIPVCLNGDDLMACAQTGSGKTAAFLVPVVH 399

Query: 62  ILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + K      R RV  P  +I+ PTRELA Q+ D   K     ++   ++ GG P+  + 
Sbjct: 400 YILKHGVSPARERVSYPIAVIMAPTRELALQIYDEVRKLTFRTDIFYDVVYGGTPYPTR- 458

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI------QNI 170
                  D+L+  PGR+ D F+RG +  + ++ LV+DEADRML+MGF   I      +  
Sbjct: 459 ----FENDILVACPGRLKDIFDRGIVSFSRVKFLVLDEADRMLEMGFEEQIEYLVASRYT 514

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT    +  +++ +L+    +       +        +    +  K
Sbjct: 515 DMPQTTERQTLMFSATFPQRILNLAKRYLRQHYYLLTVGRVGSTTKNITQKIVRVQESEK 574

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
              L  +++  Q      +IF   K+    L ++L+ +G     IHG+  Q  R + L +
Sbjct: 575 MDKLF-EVIYQQKQTDLVLIFVETKRAAEELHYALKSEGIPSATIHGDRRQFDRERALRD 633

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK+G   ++VA+D+A+RGLD+P+V HV  +D+P   ++Y HRIGRTGRAG  G A +   
Sbjct: 634 FKDGITPILVATDVASRGLDVPNVAHVIQYDLPKEMDDYTHRIGRTGRAGNKGTATSFYN 693

Query: 351 KEDIKHIDAIEKLIEK 366
           K +      +   +++
Sbjct: 694 KNNRNLTVDLYNYLKE 709


>gi|313764129|gb|EFS35493.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
 gi|314929970|gb|EFS93801.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
 gi|314972830|gb|EFT16927.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
 gi|328753876|gb|EGF67492.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
          Length = 560

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 139/443 (31%), Positives = 218/443 (49%), Gaps = 9/443 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L 
Sbjct: 50  SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 109

Query: 62  ILEKGRARVR-------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L++ PTRELA QV+ +           V  + GG+ +E+
Sbjct: 110 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYES 169

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L+ G DV++ TPGR+LD   R  L ++++ I+V+DEAD MLD+GF+P ++N+    
Sbjct: 170 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 229

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P +RQT+LFSATM   +                   + T  T+       Y  +      
Sbjct: 230 PASRQTMLFSATMPAPI-MALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIE 288

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +   + ++  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+ G
Sbjct: 289 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 348

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   D+
Sbjct: 349 EATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADV 408

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                I K +  ++       S+       +DI +    +  +P  + +T   RR+  + 
Sbjct: 409 TRWKLINKALTLELSEPVETYSTSPHLYTDLDIPEDAQGQIIDP-EKAATEKKRRQHRHG 467

Query: 415 SQKSHIPLKESEKISKLQQDIQE 437
              SH             +D  +
Sbjct: 468 HDGSHHEKATRRHSRDASKDGDK 490


>gi|290955325|ref|YP_003486507.1| DEAD-box RNA-helicase [Streptomyces scabiei 87.22]
 gi|260644851|emb|CBG67937.1| putative DEAD-box RNA-helicase [Streptomyces scabiei 87.22]
          Length = 459

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 123/359 (34%), Positives = 185/359 (51%), Gaps = 5/359 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL P ++  + D G  +P PIQ  T+P  L   DV G A+TG+GKT +F L +L 
Sbjct: 28  SFDALGLPPALLRTMTDLGVTEPFPIQAATLPHALAGRDVLGRARTGSGKTLAFGLALLV 87

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                RA  + P  L+L PTRELA QV D    Y +   + +  ++GG+    Q   L  
Sbjct: 88  RTAGRRAESKRPLALVLVPTRELAQQVTDALTPYAETLGVRLTTVVGGLSINKQQAALRA 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+VL+ TPGR+ D  +R   ++N + I V+DEAD+M D+GF+P +  I   VP   Q L
Sbjct: 148 GAEVLVATPGRLADLVSRRDCVLNQVRITVLDEADQMCDLGFLPQVSEILEQVPADGQRL 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ ++  + L +P    V+  + +  T+EH  +  +              + 
Sbjct: 208 LFSATLDRDVDQLVRDHLHDPVPASVDRVAGSVTTMEHHVLNIHGADK-----YATATEI 262

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F + K  V      L   G    A+H    Q  R   L  FK+G I ++VA
Sbjct: 263 AARDGRVLMFLDTKAGVDQFTRHLRASGVRAGALHSGKSQPQRTHTLGQFKDGLITVLVA 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +++AARG+ I  +  V N D P  A++Y+HR GRT RAG  GK  TLV     + ++ +
Sbjct: 323 TNVAARGIHIEALDLVVNVDPPADAKDYLHRGGRTARAGESGKVVTLVTPNQRRDVNRM 381


>gi|254519619|ref|ZP_05131675.1| DEAD/DEAH box helicase domain-containing protein [Clostridium sp.
           7_2_43FAA]
 gi|226913368|gb|EEH98569.1| DEAD/DEAH box helicase domain-containing protein [Clostridium sp.
           7_2_43FAA]
          Length = 370

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 125/376 (33%), Positives = 204/376 (54%), Gaps = 6/376 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F DL ++ K+V  +   G   PT +Q+  IP ++ ++DV G ++TG+GKT +F+LP+L
Sbjct: 1   MNFKDLKINTKLVDELKKNGITTPTKVQVNVIPEIINKNDVIGKSKTGSGKTLAFLLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            I++           LIL PTRELA Q+ +   K+  N    +A   GG    +Q KKL 
Sbjct: 61  QIIDSNSKSTE---VLILSPTRELAIQITEEANKFNINDIGILAAY-GGKDVGSQLKKLN 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G +++I TPGR+LDH  R  + ++ +  +VIDEAD+ML MGF   I+ I S  P   QT
Sbjct: 117 KGINLIIATPGRLLDHLERKSINLSKLNTVVIDEADQMLLMGFRNEIEKIMSYAPKKLQT 176

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L FSAT+  +++K++  ++ NP  I++    +    I +          +        + 
Sbjct: 177 LCFSATIDSKVKKLAYRYMNNPTIIDITE--NEESEIPNIKQEVVKTTDRWKVDALVKIL 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     IIFC  K+    L   L  +G     IH ++ Q  R KI+ +F++  IQ ++
Sbjct: 235 EEDNPFMSIIFCRTKRRADELEVKLAAKGIKAAKIHSDVPQNKREKIMKSFRDCEIQFLI 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RG+D+  V H++N+D P   E+YIHRIGRT RAG  G    +   ++   ++ I
Sbjct: 295 ATDVASRGIDVTGVTHIYNYDAPESVESYIHRIGRTARAGDSGYTCLITDPKNYTILEEI 354

Query: 361 EKLIEKKVDWLNGDLS 376
           E  ++  +     +  
Sbjct: 355 ENYLQYTIPEREVNFK 370


>gi|91179150|gb|ABE27759.1| vasa [Chlamys farreri]
          Length = 801

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 136/387 (35%), Positives = 219/387 (56%), Gaps = 18/387 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G+    +  ++ A + KPTP+Q  +IP+V+   D+   AQTG+GKTA+F+LP+LT
Sbjct: 353 SFEEAGIYDGFMTNLVKAHFEKPTPVQKYSIPIVMSGRDLMACAQTGSGKTAAFLLPVLT 412

Query: 62  ILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            + K        + V+ P+ L++ PTRELA Q+ ++  K+     L   +L GG     Q
Sbjct: 413 GMMKNGLTGSAFSDVQEPQALVVAPTRELALQIFNDARKFSHGTMLRPVVLYGGTSVGYQ 472

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS--- 172
            K++E GA +++ TPGR++D  N+GK+ +  ++ L++DEADRMLDMGF P I+ I     
Sbjct: 473 LKQVENGAHIVVGTPGRLIDVINKGKISLAKLKYLILDEADRMLDMGFGPDIKKIVHELG 532

Query: 173 -LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 RQTL+FSAT  +E+QK++ +FL +   + V         +   F     Q  ++
Sbjct: 533 TPEKTERQTLMFSATFPEEIQKLAGDFLNDYLFLTVGRVGGACSDVTQHFFQVDRQQKRQ 592

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                    S+      ++F  QK+N   L   L + GF   +IHG+  QR R + L +F
Sbjct: 593 KLCDIL---SESGADKTLVFVEQKRNADFLASYLSESGFPTTSIHGDRLQREREEALRDF 649

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K+G   +++A+ +AARGLDIP+V HV N+D+P   + Y+HRIGRTGR G  GKA +  ++
Sbjct: 650 KQGKAPILIATSVAARGLDIPNVKHVINYDLPQSIDEYVHRIGRTGRCGNLGKATSFFSE 709

Query: 352 E-DIKHIDAIEKLI---EKKV-DWLNG 373
           + D      + +++   ++ + DWL  
Sbjct: 710 DGDGSLAKPLMRILVDAQQNIPDWLEA 736


>gi|71662019|ref|XP_818022.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70883249|gb|EAN96171.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 792

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 120/376 (31%), Positives = 194/376 (51%), Gaps = 17/376 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL + P +   V   GY +PTP+Q   IP+ L   D+   AQTG+GKTA+F++P++ 
Sbjct: 339 SFEDLYVEPALALNVAKCGYKQPTPVQRYGIPVCLNGDDLMACAQTGSGKTAAFLVPVVH 398

Query: 62  ILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + K      R RV  P  +I+ PTRELA Q+ D   K     ++   ++ GG P+  + 
Sbjct: 399 YILKHGVSPARERVSYPIAVIMAPTRELALQIYDEVRKLTFRTDIFYDVVYGGTPYPTR- 457

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI------QNI 170
                  D+L+  PGR+ D F+RG +  + ++ LV+DEADRML+MGF   I      +  
Sbjct: 458 ----FENDILVACPGRLKDIFDRGIVSFSRVKFLVLDEADRMLEMGFEEQIEYLVASRYT 513

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT    +  +++ +L+    +       +        +    +  K
Sbjct: 514 DMPQTTERQTLMFSATFPQRILNLAKRYLRQHYYLLTVGRVGSTTKNITQKIVRVQESEK 573

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
              L  +++  Q      +IF   K+    L ++L+ +G     IHG+  Q  R + L +
Sbjct: 574 MDKLF-EVIYQQKQTDLVLIFVETKRAAEELHYALKSEGIPSATIHGDRRQFDRERALRD 632

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK+G   ++VA+D+A+RGLD+P+V HV  +D+P   ++Y HRIGRTGRAG  G A +   
Sbjct: 633 FKDGITPILVATDVASRGLDVPNVAHVIQYDLPKEMDDYTHRIGRTGRAGNKGTATSFYN 692

Query: 351 KEDIKHIDAIEKLIEK 366
           K +      +   +++
Sbjct: 693 KNNRNLTVDLYNYLKE 708


>gi|71656970|ref|XP_817024.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70882190|gb|EAN95173.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 798

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 120/376 (31%), Positives = 194/376 (51%), Gaps = 17/376 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL + P +   V   GY +PTP+Q   IP+ L   D+   AQTG+GKTA+F++P++ 
Sbjct: 346 SFEDLYVEPALALNVAKCGYKQPTPVQRYGIPVCLNGDDLMACAQTGSGKTAAFLVPVVH 405

Query: 62  ILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + K      R RV  P  +I+ PTRELA Q+ D   K     ++   ++ GG P+  + 
Sbjct: 406 YILKHGVSPARERVSYPIAVIMAPTRELALQIYDEVRKLTFRTDIFYDVVYGGTPYPTR- 464

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI------QNI 170
                  D+L+  PGR+ D F+RG +  + ++ LV+DEADRML+MGF   I      +  
Sbjct: 465 ----FENDILVACPGRLKDIFDRGIVSFSRVKFLVLDEADRMLEMGFEEQIEYLVASRYT 520

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT    +  +++ +L+    +       +        +    +  K
Sbjct: 521 DMPQTTERQTLMFSATFPQRILNLAKRYLRQHYYLLTVGRVGSTTKNITQKIVRVQESEK 580

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
              L  +++  Q      +IF   K+    L ++L+ +G     IHG+  Q  R + L +
Sbjct: 581 MDKLF-EVIYQQKQTDLVLIFVETKRAAEELHYALKSEGIPSATIHGDRRQFDRERALRD 639

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK+G   ++VA+D+A+RGLD+P+V HV  +D+P   ++Y HRIGRTGRAG  G A +   
Sbjct: 640 FKDGITPILVATDVASRGLDVPNVAHVIQYDLPKEMDDYTHRIGRTGRAGNKGTATSFYN 699

Query: 351 KEDIKHIDAIEKLIEK 366
           K +      +   +++
Sbjct: 700 KNNRNLTVDLYNYLKE 715


>gi|300214777|gb|ADJ79193.1| ATP-dependent RNA helicase [Lactobacillus salivarius CECT 5713]
          Length = 440

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 116/365 (31%), Positives = 182/365 (49%), Gaps = 9/365 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F        +  A+ +  + +PT +Q + IP +L+   V G +QTG+GKT +F+LP+  
Sbjct: 3   NFRGFNFKEYIYQALDEINFKEPTEVQARLIPTILKGKSVVGQSQTGSGKTHTFLLPIFQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE- 120
            L   +  V+     I  P+RELA Q+ +  ++  K     + +       + Q +  + 
Sbjct: 63  NLNAQKDEVQAV---ITTPSRELAYQIYEAAKQLAKFSPENIWIQNYVGGTDKQRQIEKL 119

Query: 121 --RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 ++I TPGRILD      L ++N   LV+DEAD  LD+GF+     I S +P   
Sbjct: 120 KSHQPQLVIGTPGRILDLVRENALDIHNAHYLVVDEADMTLDLGFLKETDAIASTLPKDL 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L+FSAT+ ++L+     ++ NP    V      + TI++  V+T  +   K       
Sbjct: 180 QMLVFSATIPEKLRPFLRKYMYNPVIEVVANKHVISPTIDNWLVSTKGRDRNKLIYDLL- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +       ++F N K+    L + L  QG  V  +HG I  R R +I+   +    Q 
Sbjct: 239 --TMGEPYLALVFANTKERADELTNYLRSQGLKVAKVHGGIQPRQRKRIMREIQNLDYQF 296

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N D+P   E ++HR+GRTGR G  G A TL    + K ID
Sbjct: 297 VVATDLAARGIDIEGVSHVINDDIPEDLEFFVHRVGRTGRNGMKGTAITLYEPSEEKLID 356

Query: 359 AIEKL 363
            +E +
Sbjct: 357 ELESM 361


>gi|260800652|ref|XP_002595212.1| hypothetical protein BRAFLDRAFT_238703 [Branchiostoma floridae]
 gi|229280456|gb|EEN51224.1| hypothetical protein BRAFLDRAFT_238703 [Branchiostoma floridae]
          Length = 407

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 130/378 (34%), Positives = 201/378 (53%), Gaps = 3/378 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+GL   ++  +   G+ KP+ IQ + I    Q  DV   AQ+GTGKTA+F + +L 
Sbjct: 31  NFDDMGLREDLLRGIYAYGFEKPSAIQQRAILPCCQGRDVIAQAQSGTGKTATFAVAILQ 90

Query: 62  I-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               K     R  + L+L PTRELA Q+       G   N      IGG    +    LE
Sbjct: 91  QLAMKAGNAGRNCQALVLAPTRELAQQIQKVVLALGDYMNARCHACIGGTNVRSDIAALE 150

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  +++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I   +P   Q 
Sbjct: 151 EGVHIVVGTPGRVNDMIGRRALNTSDVKLFVLDEADEMLSRGFKDQIYDIFKFLPSDIQV 210

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V+  F++NP RI V     T E I+  ++    +  K   L      
Sbjct: 211 ILLSATMPSDVLEVTTKFMRNPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDL--Y 268

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IFCN ++ V  L   +  + F+V A+HG++DQR R  I+  F+ G+ ++++
Sbjct: 269 ETLTITQAVIFCNTRRKVDWLTEKMSGRDFTVSAMHGDMDQRERDLIMREFRSGSSRVLI 328

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   +  ED + +  I
Sbjct: 329 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFMTMEDCRCLKDI 388

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E+    +V+ +  +++ L
Sbjct: 389 EQYYNTQVEEMPMNVADL 406


>gi|198243415|ref|YP_002215491.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197937931|gb|ACH75264.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326623237|gb|EGE29582.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 457

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 136/382 (35%), Positives = 216/382 (56%), Gaps = 9/382 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF AQ   L+
Sbjct: 64  RIDVSLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  +S    Q P RIE++T     + +       +   + +   L Q L 
Sbjct: 181 LLFSATWPEAIAAISGRVQQQPIRIEIDTV----DALPAIEQQFFETSAHEKISLLQTLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN KK+   +C +L   G S  A+HG+++QR R + L  F  G+ +++V
Sbjct: 237 SQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +  A E+ +  + +
Sbjct: 297 ATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANIL 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPL 382
            ++++ K++WLN      + PL
Sbjct: 357 SEMLQLKLNWLNAPARQPSLPL 378


>gi|10039329|dbj|BAB13307.1| vasa-related protein CnVAS1 [Hydra vulgaris]
          Length = 797

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 115/385 (29%), Positives = 192/385 (49%), Gaps = 9/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA+  +   ++  V  A Y+KPTP+Q   IP++    D+   AQTG+GKTA+F++P+L 
Sbjct: 354 EFAEANIDRTILENVEKAHYIKPTPVQKYAIPIITGNRDLMSCAQTGSGKTAAFLIPVLN 413

Query: 62  ILEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            L + R       + V+ P  L++ PTRELA Q+     K+ +N ++   ++ GG+    
Sbjct: 414 TLMQFRSELTSSLSEVQAPLALVIAPTRELAVQIQKEARKFAQNTSIKPVVIYGGVQVAY 473

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +++++   +L+ TPGR+ D   + K+ + N++ L++DEADRMLDMGF+P I+ I +  
Sbjct: 474 HLRQVQQDCHLLVGTPGRLKDFLGKRKISLANLKYLILDEADRMLDMGFLPEIKAIINDF 533

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
               +    +   +       +N         V                   +  +    
Sbjct: 534 DMPPKEDRHTLMFSATFPTEIQNLAAEFLNNYVYLTIGKVGGTHSDITQCIMEVEESAKR 593

Query: 235 LQQLLQSQDTMKN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            + +        N  ++F   K+    L   L + GF   +IHG+  Q+ R + L+ FK 
Sbjct: 594 DKLIEILDTEGTNRNLVFVQTKRLADFLASYLCQNGFHTTSIHGDRLQQQREEALAEFKA 653

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-E 352
           GT  +++A+ +AARGLDI DV  V N+D+P+  E YIHRIGRTGR G  GKA +   + +
Sbjct: 654 GTQHVLIATAVAARGLDIADVKQVINYDLPDEIEEYIHRIGRTGRIGNKGKAISFFTRGK 713

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSS 377
           D     A+ K +      +   L  
Sbjct: 714 DEGLARALVKTLADAEQEVPSWLEE 738


>gi|328752857|gb|EGF66473.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
          Length = 564

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 138/443 (31%), Positives = 218/443 (49%), Gaps = 9/443 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+   +  A+   G V P PIQ  +IP+ ++  D+ G A+TGTGKT +F + +L 
Sbjct: 54  SFANLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 113

Query: 62  ILEKGRARVR-------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L++ PTRELA QV+ +           V  + GG+ +E+
Sbjct: 114 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYES 173

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L+ G DV++ TPGR+LD   R  L ++++ I+V+DEAD MLD+GF+P ++N+    
Sbjct: 174 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 233

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P +RQT+LFSATM   +                   + T  T+       Y  +      
Sbjct: 234 PASRQTMLFSATMPAPI-MALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIE 292

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +   + ++  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+ G
Sbjct: 293 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 352

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   D+
Sbjct: 353 EATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADV 412

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                I K +  ++       S+       +DI +    +  +P  + +T   RR+  + 
Sbjct: 413 TRWKLINKALNLELSEPVETYSTSPHLYTDLDIPEDAQGQIIDP-EKAATEKKRRQHRHG 471

Query: 415 SQKSHIPLKESEKISKLQQDIQE 437
              SH             +D  +
Sbjct: 472 HDGSHHEKATRRHSRDASKDGDK 494


>gi|229071788|ref|ZP_04205003.1| ATP-dependent RNA helicase yqfR [Bacillus cereus F65185]
 gi|228711383|gb|EEL63343.1| ATP-dependent RNA helicase yqfR [Bacillus cereus F65185]
          Length = 436

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 120/378 (31%), Positives = 204/378 (53%), Gaps = 12/378 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L 
Sbjct: 5   TFTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLN 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNF----EKYGKNYNLTVALLIGGIPFEAQNK 117
            +   R  V++    I  PTRELA Q+ +      +   ++  +T   LIGG   +   +
Sbjct: 65  RINASREEVQLV---ITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIE 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +   
Sbjct: 122 KLKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMSKN 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +     +    L  
Sbjct: 182 LQMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKH---RNKIDLVH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q      ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 239 KMLLQFKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|228954569|ref|ZP_04116594.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229081545|ref|ZP_04214043.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock4-2]
 gi|229180563|ref|ZP_04307905.1| ATP-dependent RNA helicase yqfR [Bacillus cereus 172560W]
 gi|229192495|ref|ZP_04319458.1| ATP-dependent RNA helicase yqfR [Bacillus cereus ATCC 10876]
 gi|228591072|gb|EEK48928.1| ATP-dependent RNA helicase yqfR [Bacillus cereus ATCC 10876]
 gi|228602987|gb|EEK60466.1| ATP-dependent RNA helicase yqfR [Bacillus cereus 172560W]
 gi|228701750|gb|EEL54238.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock4-2]
 gi|228805226|gb|EEM51820.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 436

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 114/375 (30%), Positives = 201/375 (53%), Gaps = 6/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L 
Sbjct: 5   TFTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLN 64

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +   R  V+ +      E  +++  ++    +   ++  +T   LIGG   +   +KL+
Sbjct: 65  RINASREEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   Q 
Sbjct: 125 KQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +     +    L   + 
Sbjct: 185 LVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKH---RNKIDLVHKML 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q +V
Sbjct: 242 LQFKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +D++
Sbjct: 302 ATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEALDSL 361

Query: 361 EKLIEKKVDWLNGDL 375
           EK  ++ +++ + DL
Sbjct: 362 EK--QRHIEFKHVDL 374


>gi|200389990|ref|ZP_03216601.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199602435|gb|EDZ00981.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 457

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 139/401 (34%), Positives = 222/401 (55%), Gaps = 10/401 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF AQ   L+
Sbjct: 64  RIDVTLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  +S    Q P RIE++T     + +       +   + +   L Q L 
Sbjct: 181 LLFSATWPEAIAAISGRVQQQPIRIEIDTV----DALPAIEQQFFETSAHEKISLLQTLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN KK+   +C +L   G S  A+HG+++QR R + L  F  G+ +++V
Sbjct: 237 SQHQPASCVVFCNTKKDCEAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +  A E+ +  + +
Sbjct: 297 ATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANIL 356

Query: 361 EKLIEKKVDWLNGDL-SSLNPPLEKIDIAQHNHARKNNPIP 400
            ++++ K++WLN     SL P   ++     +  +K    P
Sbjct: 357 SEMLQLKLNWLNAPARQSLLPLAAEMATLCIDGGKKAKMRP 397


>gi|164659842|ref|XP_001731045.1| hypothetical protein MGL_2044 [Malassezia globosa CBS 7966]
 gi|159104943|gb|EDP43831.1| hypothetical protein MGL_2044 [Malassezia globosa CBS 7966]
          Length = 606

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 130/399 (32%), Positives = 198/399 (49%), Gaps = 28/399 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ +   ++  +   G   PTPIQ++ +P      D+ GIA TG+GKT +F LP++ 
Sbjct: 171 NFRDMKVPDCIIDHLKAKGIQAPTPIQMQGLPTAFSGRDMIGIAFTGSGKTLTFSLPLIL 230

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKY------GKNYNLTVALLIGGI 110
              +   R+       P  LI+ P+RELA Q  D+          G    +   L IGGI
Sbjct: 231 FAVEAERRLPFEQGEGPVGLIVCPSRELARQTYDSIIAMAEALEYGGYARIRTLLCIGGI 290

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q+  L RG  +++ TPGR+ D   + +L +++   L +DEADRM+DMGF   ++NI
Sbjct: 291 HMSEQSHVLRRGVHIVVATPGRLQDVLEKKRLGLHSCTYLCLDEADRMMDMGFEDDVRNI 350

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++      F        V      A       V      S+
Sbjct: 351 LSFFTRQRQTLLFSATMPKKILD----FAAQSLFDPVIVNVGRAGAASLDVVQEVEYVSQ 406

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  + Q L   Q T    I+F + K  V ++   L ++G    AIHG+  Q  R   + +
Sbjct: 407 ESKMTQLLEALQKTAPRVIVFSDNKNEVDDIHEFLLRKGVEAVAIHGSKTQDEREYAIES 466

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   +MVAS +A++GLD  ++ HV N+ +P   E+Y+H+IGRTGR+G+ G A T V 
Sbjct: 467 FKSGKKDVMVASGIASKGLDFSNIQHVINYTMPKDIEDYVHQIGRTGRSGKTGVATTFVN 526

Query: 351 KE-------DIKHIDAIEKLIEKKVDWLNGDLSSLNPPL 382
            +       D+K++     L+E K   +     +L  PL
Sbjct: 527 AQTPQSTMLDLKYL-----LLEAK-QHVPSFFDALQDPL 559


>gi|323203477|gb|EFZ88501.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
          Length = 380

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 136/373 (36%), Positives = 213/373 (57%), Gaps = 9/373 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF AQ   L+
Sbjct: 64  RIDVTLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPETRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D +  +S    Q P RIE++T  +     +  F  +  +       L Q L 
Sbjct: 181 LLFSATWPDAIAAISGRVQQQPIRIEIDTVDALPAIEQQFFETSVHEK----ISLLQTLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN KK+   +C +L   G S  A+HG+++QR R + L  F  G+ +++V
Sbjct: 237 SQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +  A E+ +  + +
Sbjct: 297 ATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANIL 356

Query: 361 EKLIEKKVDWLNG 373
            ++++ K++WLN 
Sbjct: 357 SEMLQLKLNWLNA 369


>gi|322614908|gb|EFY11833.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619348|gb|EFY16228.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623160|gb|EFY20002.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628449|gb|EFY25237.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634857|gb|EFY31588.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638578|gb|EFY35273.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640887|gb|EFY37535.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645384|gb|EFY41912.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651731|gb|EFY48103.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654369|gb|EFY50691.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661210|gb|EFY57436.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662662|gb|EFY58869.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667727|gb|EFY63887.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671861|gb|EFY67982.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677094|gb|EFY73158.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680244|gb|EFY76283.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685327|gb|EFY81323.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194310|gb|EFZ79506.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199386|gb|EFZ84480.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323205860|gb|EFZ90823.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323217187|gb|EGA01908.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323227265|gb|EGA11435.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323232049|gb|EGA16156.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234576|gb|EGA18663.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238029|gb|EGA22088.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243370|gb|EGA27389.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246177|gb|EGA30162.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253678|gb|EGA37505.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259111|gb|EGA42757.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260421|gb|EGA44034.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266491|gb|EGA49978.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271215|gb|EGA54642.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 457

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 136/373 (36%), Positives = 213/373 (57%), Gaps = 9/373 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF AQ   L+
Sbjct: 64  RIDVTLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPETRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D +  +S    Q P RIE++T  +     +  F  +  +       L Q L 
Sbjct: 181 LLFSATWPDAIAAISGRVQQQPIRIEIDTVDALPAIEQQFFETSVHEK----ISLLQTLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN KK+   +C +L   G S  A+HG+++QR R + L  F  G+ +++V
Sbjct: 237 SQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +  A E+ +  + +
Sbjct: 297 ATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANIL 356

Query: 361 EKLIEKKVDWLNG 373
            ++++ K++WLN 
Sbjct: 357 SEMLQLKLNWLNA 369


>gi|300716861|ref|YP_003741664.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
 gi|299062697|emb|CAX59817.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
          Length = 459

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 134/404 (33%), Positives = 213/404 (52%), Gaps = 12/404 (2%)

Query: 2   DFADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            FA L  L    +  + + GY   TP+Q   +P +L+  DV   A+TG+GKTA+F L +L
Sbjct: 3   SFATLTALPASQIDNLNELGYHTMTPVQAAALPAILEGKDVRAQAKTGSGKTAAFGLGVL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++  +    + ++L+L PTRELA QVA    +  +       L + G  P  AQ   L
Sbjct: 63  HRIDVTQ---FVTQSLVLCPTRELADQVAKELRRLARFAANIKILTLCGGQPMGAQRDSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +++ TPGRILDH  R  L ++ I  LV+DEADRML+MGF   I+ I    P +RQ
Sbjct: 120 VHAPHIVVGTPGRILDHLKRETLKLDQIGTLVLDEADRMLEMGFREDIEEIIKYCPASRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   ++ +      QN +R  V   +     +       Y   +++       L
Sbjct: 180 TLLFSATWPQDIAR----ISQNIQREPVAVETDVVSDLPTIDQRFYEAGAREKLTALIGL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S +   + ++FCN K+   ++ ++L+    S  A+HG+++QR R ++L  F  G+ +++
Sbjct: 236 LSDEKPSSCVVFCNTKRECDDVAYALDSAKISALALHGDLEQRDRDQVLIQFANGSCRVL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+ +    E ++HRIGRT RAG  G A + VA +++    A
Sbjct: 296 VATDVAARGLDIKSLAMVVNYQLSFDPEVHVHRIGRTARAGAEGCAISFVAPDEMVRAHA 355

Query: 360 IEKLIEKKVDWLN-GDLSSL--NPPLEKIDIAQHNHARKNNPIP 400
           +E  ++ K+ W    +L S+   P L ++     +  RK    P
Sbjct: 356 LEDFLQMKLSWHKVSELKSVAAQPLLAEMATLSLDGGRKAKIRP 399


>gi|198426131|ref|XP_002127349.1| PREDICTED: similar to Ddx52 protein [Ciona intestinalis]
          Length = 538

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 98/447 (21%), Positives = 176/447 (39%), Gaps = 28/447 (6%)

Query: 4   ADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
              G+    V  + +  G+   +PIQ++ IP +L   ++   A TG+GKT +F++P+++ 
Sbjct: 94  EKFGVHSICVKNLTERFGFSALSPIQMQAIPAMLDGREILACAPTGSGKTLAFLVPVVSH 153

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFE-------------KYGKNYNLTVALLI 107
               K   + +  R LIL PTRELA Q     +              +    N+ +    
Sbjct: 154 LLNVKKTKKGKNIRALILSPTRELAEQTFSECKKLIRSENDEENEKIHKDLLNIRLMDKN 213

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
               F  + K+      ++      I        +L  +    ++ +    L        
Sbjct: 214 LVKSFTEKKKQTCDIDLLISTPNRIIHLIKQETPILKLDSIEWLVVDESDKLFEDGKEDA 273

Query: 168 -------QNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
                  +  ++      +  +FSAT   ++Q+     + N  ++ V   ++   +++  
Sbjct: 274 SFRDQLGRIYSACENPKIRRAMFSATFAHDVQQWCVLNMDNVLQVTVGGKNTATSSVKQE 333

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
                 +  K  A+  Q +         ++F   K+    L   L   G ++ AIHG+  
Sbjct: 334 LKYVGNEQGKLLAM--QDIIRGGFAPPALVFVQSKERAKELYAELVYDGINIDAIHGDRT 391

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
              R K + +   GT  +M+ ++   RG+D  +V  V N+D PN A  YIHRIGRTGRAG
Sbjct: 392 PEQREKAIQSLHAGTTWVMICTEHMGRGMDFQNVNLVVNYDFPNSAVTYIHRIGRTGRAG 451

Query: 341 RHGKAFTLVAKEDIKHIDAIEKLIEKK---VDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           R G+A TL   +D   + +I  LI++    V      +  ++    K             
Sbjct: 452 RTGRAITLFTDQDRALLRSIANLIKEAGCDVPEYMLKMKKMSKEERKKTAKTQTKRNTIR 511

Query: 398 PIPQKSTGFDRRKKNYSSQKSHIPLKE 424
             P       +++K     K    LKE
Sbjct: 512 TAPPDILKRAKKRKTEIKNKKIQKLKE 538


>gi|189203493|ref|XP_001938082.1| ATP-dependent RNA helicase eIF4A [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|330914916|ref|XP_003296835.1| hypothetical protein PTT_07032 [Pyrenophora teres f. teres 0-1]
 gi|187985181|gb|EDU50669.1| ATP-dependent RNA helicase eIF4A [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|311330840|gb|EFQ95065.1| hypothetical protein PTT_07032 [Pyrenophora teres f. teres 0-1]
          Length = 396

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L  +++  V   G+ +P+ IQ + I  V++ +DV   AQ+GTGKTA+F +  L 
Sbjct: 24  SFDNMNLKAELLRGVYAYGFERPSAIQQRAIMPVIKGNDVIAQAQSGTGKTATFSISTLQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+  + LIL PTRELA Q+       G   ++     IGG       K L+ 
Sbjct: 84  KIDSN---VKACQALILAPTRELAQQIQKVVVAIGDFMDIQCHACIGGTSVRDDMKALQD 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I  L+P + Q +
Sbjct: 141 GPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 201 LLSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEDWKLDT--LSDLYE 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A
Sbjct: 259 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDVIMKEFRSGSSRVLIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 379 QFYSTQIEEMPMNVADL 395


>gi|316976022|gb|EFV59375.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
          Length = 964

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 196/368 (53%), Gaps = 19/368 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++A  G S +V+  +    Y KPTPIQ + IP +L   DV GIA+TG+GKT +F++PM  
Sbjct: 297 NWAQTGSSRRVMDLLKKYNYEKPTPIQAQAIPAILCGRDVIGIAKTGSGKTLAFLIPMFR 356

Query: 62  I--------LEKGRARVRMPRTL------ILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                       G      P         I+ PTRELA Q+A   +K+ +  NL+   + 
Sbjct: 357 HVLDQPPLDDMDGPIGNERPVQYCALVTLIMTPTRELAMQIAKECKKFSRPLNLSTVCVY 416

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFI 164
           GG     Q  +L+RGA++++CTPGR++D     N     +  +  LV+DEADRM DMGF 
Sbjct: 417 GGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGKVTNLRRVTYLVLDEADRMFDMGFE 476

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           P +  I   +   RQT++FSAT   +++ ++   L+ P  I V   S+  +       A 
Sbjct: 477 PQVLKIIGNIRPDRQTVMFSATFPRQMEALARKVLEKPIEIIVGNRSTVCQD--VEQHAI 534

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                 +   L +LL     + N +IF +++++   L   L + G+    +HG +DQ  R
Sbjct: 535 IVDEEHRFLKLLELLGVYYELGNILIFVDKQEHADELVADLMRAGYICAPLHGGLDQFDR 594

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
              + +FK G I L++A+ +AARGLD+ ++  V N+D PN  E+Y+HR+GR GRAG  G 
Sbjct: 595 DSTIVDFKNGVITLLIATSVAARGLDVKNMILVVNYDCPNHYEDYVHRVGRCGRAGNKGF 654

Query: 345 AFTLVAKE 352
           A+T +   
Sbjct: 655 AYTFIQPY 662


>gi|19552665|ref|NP_600667.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62390333|ref|YP_225735.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
           13032]
 gi|145295583|ref|YP_001138404.1| hypothetical protein cgR_1510 [Corynebacterium glutamicum R]
 gi|21324218|dbj|BAB98843.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
           ATCC 13032]
 gi|41325670|emb|CAF21459.1| Superfamily II DNA or RNA helicase [Corynebacterium glutamicum ATCC
           13032]
 gi|140845503|dbj|BAF54502.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 448

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 137/449 (30%), Positives = 215/449 (47%), Gaps = 12/449 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L L  ++V  +   G  +  PIQ   IP  L   DV G   TG+GKT +F LPM+T
Sbjct: 3   TFLELKLPDEIVRELRSQGITEAFPIQEAAIPDALAGKDVLGRGPTGSGKTFTFGLPMIT 62

Query: 62  I-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                G ++   PR L+L PTRELAAQV +  +   +   L V  ++GG+        L 
Sbjct: 63  RLARSGASKPGRPRGLVLVPTRELAAQVRERLDDPARVMGLRVLEVVGGVNINRNITALA 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+L+ TPGR  D  N+ KL + ++ +  +DEAD+M DMGF+P ++ +  L P   Q 
Sbjct: 123 TPVDILVATPGRAQDLINQKKLSLADVSVTALDEADQMADMGFLPQVKKLMDLTPKNGQR 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  ++ K+ + +L NP         +  +T+EH  +    +  +   +L     
Sbjct: 183 LLFSATLDGDVSKLVDRYLHNPITHSTAPVQAAVDTMEHYRLLVGGRDPRNSVVLS---- 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K  V      L + G +   IHG+  Q +R   L+ F +G+I ++V
Sbjct: 239 IAAREGKTIMFMRTKHGVDRQVKKLRRVGVNAVGIHGDKGQSTRTNALAGFADGSIPVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+ DV  V + D P   + Y+HR GRT RAG  G   TLV  E IK +  +
Sbjct: 299 ATDIAARGIDVDDVSLVVHVDPPAEHKAYLHRAGRTARAGTSGTVVTLVMDEQIKEVREL 358

Query: 361 EK-----LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST--GFDRRKKNY 413
            +       E KV+  + +L+ +        +A     ++     QK+T    D R  + 
Sbjct: 359 FQKAGVTAAEVKVNENSPELAKITGARRPSGVALPAPGQQQPKREQKNTHNRSDSRGSSR 418

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADS 442
           + ++       S   S  ++     D   
Sbjct: 419 NPRRRGQSGSRSTGRSNPRRQTSRKDGPK 447


>gi|326470936|gb|EGD94945.1| ATP-dependent RNA helicase DBP8 [Trichophyton tonsurans CBS 112818]
 gi|326478499|gb|EGE02509.1| ATP-dependent RNA helicase DBP8 [Trichophyton equinum CBS 127.97]
          Length = 528

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 127/432 (29%), Positives = 209/432 (48%), Gaps = 19/432 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ LGL+P +V ++      +PT IQ   IP +++  D  G ++TG+GKT +F  P+L 
Sbjct: 100 SFSSLGLAPWLVSSLKAMEIKRPTAIQKSCIPEIIKGRDCIGGSRTGSGKTVAFAAPILH 159

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                         +IL PTRELA Q+ +  +      +L   L+ GG     Q   L +
Sbjct: 160 KW---SEDPFGIYAVILTPTRELALQIFEQVKAISAPQSLKPLLITGGSDMRPQAIGLSQ 216

Query: 122 GADVLICTPGRILDHFN----RGKLLMNNIEILVIDEADRMLDMG---FIPYIQNITSLV 174
              ++I TPGR+ DH         + +  + ++V+DEADR+L  G    +P ++   S +
Sbjct: 217 RPHIVIATPGRLADHIKSSGEDTIIGLRRVRMVVLDEADRLLTSGPGSMLPDVETCLSAL 276

Query: 175 PFTRQTLL--FSATMTDELQ----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
           P +       F+AT+T E++                 E++T ++T               
Sbjct: 277 PPSSDRQTLLFTATVTPEVRALKSMPRAKNKPPIFVTEISTENTTIPPTLKQTYLQVPLN 336

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            ++  L   L    ++ K+ IIFCN+ K    L   L +    V ++H  + Q  R+  L
Sbjct: 337 HREAFLHVLLSTEGNSSKSTIIFCNRTKTADLLERILRRLSHRVTSLHSLLPQSERIANL 396

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           S F+    +L+VA+D+AARGLDIP VG V N+DVP   ++YIHR+GRT RAGR G+A TL
Sbjct: 397 SRFRASAARLLVATDVAARGLDIPSVGLVINYDVPRNPDDYIHRVGRTARAGREGEAITL 456

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD- 407
           V + D++ + AIE  + K++        ++   + K  + +   + K   + +   G D 
Sbjct: 457 VGQRDVQLVLAIEARVGKQMVAWEEPGVNIESRIVKGTVLKEVGSTKREAMGEIDEGRDV 516

Query: 408 --RRKKNYSSQK 417
             RR +     +
Sbjct: 517 LGRRVRKLKKVR 528


>gi|226510222|ref|NP_001147777.1| nucleolar RNA helicase 2 [Zea mays]
 gi|195613718|gb|ACG28689.1| nucleolar RNA helicase 2 [Zea mays]
          Length = 613

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 122/458 (26%), Positives = 218/458 (47%), Gaps = 10/458 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LG SP++V  +   G  +  PIQ   +   +Q  D+ G A+TGTGKT +F +P++  +  
Sbjct: 100 LGTSPRIVEKLAARGITRLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDKILS 159

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
              +    R  +               +++ ++  L    + GG+P   Q + L  G D+
Sbjct: 160 YNEKNGNGRNPLAIILAPTRELARQVEKEFRESAPLDTLCVYGGVPINQQMRALNYGVDI 219

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           ++ TPGR++D   RG L ++ I+ +V+DEAD+ML +GF   ++ I   +P  RQ++LFSA
Sbjct: 220 VVGTPGRVIDLLRRGVLNLSQIQFVVLDEADQMLAVGFDEDVEVIMEQLPQNRQSMLFSA 279

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           TM   ++K+S  +L++P  I++   S           +  +    K +++  L++    +
Sbjct: 280 TMPSWIRKISNKYLKDPVIIDLVGDSDQKLPEGISLYSIASDNFGKPSIIGPLIKEHANV 339

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              I+F   K+        +  + +   A+HG+I Q  R + LS F++G   ++VA+D+A
Sbjct: 340 GKCIVFTQTKREADR-LAYVMGRSYQCQALHGDISQNQRERTLSGFRDGRFNILVATDVA 398

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARGLDIP+V  V ++++PN +E ++HR GRT RAG+ G A  +   E  + +  IE+ I 
Sbjct: 399 ARGLDIPNVDLVVHYEIPNTSELFVHRSGRTARAGKKGSAILIYTYEQTRAVRVIEQDIG 458

Query: 366 KKVDWLNG-----DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG--FDRRKKNYSSQKS 418
            +   L       + + +   +           R   P  ++  G   D R + +     
Sbjct: 459 CRFTELPKMPVSDEAADMFNVMRDTRSRSVGSRRTGGPFSREGYGDFEDHRSRGFGDFDR 518

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPK 456
                 S++    +         S GFR +   F  P 
Sbjct: 519 F--GGSSDRGGGFRDSGSRYHGGSGGFRRSSSDFGRPS 554


>gi|206971225|ref|ZP_03232176.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|206733997|gb|EDZ51168.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
          Length = 436

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 114/375 (30%), Positives = 200/375 (53%), Gaps = 6/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L 
Sbjct: 5   TFTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLN 64

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +   R  V+ +      E  +++  ++    +    +  +T   LIGG   +   +KL+
Sbjct: 65  RINASREEVQLVITAPTRELAQQIYEEIVKLTKFCAADQMITARCLIGGTDKQRSIEKLK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   Q 
Sbjct: 125 KQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +     +    L   + 
Sbjct: 185 LVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKH---RNKIDLVHKML 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q +V
Sbjct: 242 LQFKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +D++
Sbjct: 302 ATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEALDSL 361

Query: 361 EKLIEKKVDWLNGDL 375
           EK  ++ +++ + DL
Sbjct: 362 EK--QRHIEFKHVDL 374


>gi|302916935|ref|XP_003052278.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256733217|gb|EEU46565.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 545

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 115/430 (26%), Positives = 200/430 (46%), Gaps = 17/430 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L + P +V ++ +    +PT IQ   IP +L+  D  G ++TG+GKT +F +P+L 
Sbjct: 115 TFSALNVRPWLVQSLGNMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQ 174

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                   +      +L PTRELA Q+ + F+      +L   L+ GG    AQ  +L +
Sbjct: 175 KWADDPTAIFAV---VLTPTRELALQIYEQFKAISSPQSLKAILITGGSDMRAQAIELGK 231

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM--------GFIPYIQNITSL 173
              V+I TPGR+ DH              V        D           +P ++   S+
Sbjct: 232 RPHVVIATPGRLADHVRTSGEDTICGLRRVKYVVLDEADRLLNATGPGSMLPDVEQCLSV 291

Query: 174 VPFTRQTLL--FSATMTDELQ----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           +P   +     F+AT+T E++       +   Q     EV+T +       +        
Sbjct: 292 LPPATERQTLLFTATITPEVRALKDMPIKPGKQPVFVCEVDTQTLAIPATLNQMYIKVPV 351

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             K+  L   LL  ++  K  I+FCN+      L H L      V ++H  + QR R+  
Sbjct: 352 THKEHYLHVFLLTEENVDKTIILFCNRTSTADYLHHLLRLLEHRVTSLHSKLPQRQRIDN 411

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L+ F+    +++VA+D+AARGLDIP+V  V N+D+P   ++YIHR+GRT RAGR G+A +
Sbjct: 412 LARFRASAARILVATDVAARGLDIPEVSLVINYDLPRDPDDYIHRVGRTARAGRKGEAVS 471

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
            + + D++    IEK + ++++    +  +L   + +  +   +  ++   +  +     
Sbjct: 472 FIGQRDVELALTIEKRVGREMESWEEEGVNLETRVVRDVLKVVSEKKREALLEVEENREV 531

Query: 408 RRKKNYSSQK 417
             K+  + QK
Sbjct: 532 GGKRKRTKQK 541


>gi|242023199|ref|XP_002432023.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212517381|gb|EEB19285.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 755

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 108/379 (28%), Positives = 175/379 (46%), Gaps = 17/379 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +      V+  +   G++KPT IQ +  P+ L   D+ GIAQTG+GKT ++ LP   
Sbjct: 144 TFEESNFPANVMAVIKKQGFLKPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYALPATV 203

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   +   +   P  L+L PTRELA Q+    + +G + ++    + GG P  +Q + L
Sbjct: 204 HITNQKPLSKGDGPIALVLAPTRELAQQIQSVAKDFGASCSIRNTCIFGGAPKGSQARDL 263

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG +++I TPGR++D  ++G   +     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 264 ERGVEIVIATPGRLIDFLDKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 323

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L++SAT   E+Q ++E+FL +  +I + + S  A       V       K+  L   L 
Sbjct: 324 VLMWSATWPKEVQTLAEDFLHDYIQINIGSLSLAANHNIRQHVEVMQDSEKEGRLTNLLR 383

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  N I+   + K  V+    L KQ             +     + N        +
Sbjct: 384 DIGGDRNNKILIFVETKKKVDDIARLVKQEGFPAICMHGDKSQQERDHVLNEFRSGKCAV 443

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +   A    I                 Y+HRIGRTGR+ + G AFT    ++ +    
Sbjct: 444 LVATDVAARGKIRH---------------YVHRIGRTGRSSQMGTAFTFFTPQNARQAKG 488

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           +  ++E+    +N  ++ L
Sbjct: 489 LVAVLEEASQPINPKVTEL 507


>gi|332535929|ref|ZP_08411636.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034692|gb|EGI71243.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 422

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 130/369 (35%), Positives = 200/369 (54%), Gaps = 13/369 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGL P+++  + D  Y +PTPIQ + IP +L   D+   A TG+GKTA+F LPML 
Sbjct: 9   NFNELGLIPELIARLSDLEYTQPTPIQAQAIPSILTGSDLIAGANTGSGKTATFALPMLQ 68

Query: 62  ILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113
                       ++      LIL PTRELA QVAD+ + Y  N+N  +    + GG+   
Sbjct: 69  KAFLELGAKSTTSKGNFVTGLILVPTRELATQVADSVKSYSANFNGAIKTVAVFGGVSVN 128

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L  GAD+++ TPGR+LD  +   + ++ +  LV+DEADRML +GF   + ++ +L
Sbjct: 129 TQMQALRGGADIIVATPGRLLDLISSNAIKLDKVTTLVLDEADRMLSLGFTEELADLLAL 188

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  +QT+LFSAT  +++       L      +        +         +     +  
Sbjct: 189 MPAKKQTMLFSATFPEQV-----KLLTQELLNDPVEIQVQNKDESTLVQRVFTVNKGEKT 243

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            +   L      +  +IF N KK+  +L   LEK+G +    HG+  Q  R +++  FK 
Sbjct: 244 TVLAHLIKTHKWRQVLIFVNAKKDCEHLAAKLEKRGVNAQVFHGDKGQSERTRVIEKFKA 303

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I++++A+D+AARGLDI  +  V NF++P    +Y+HRIGR+GRAG  G A +LV  ED
Sbjct: 304 GEIEVLIATDIAARGLDIEKLPVVINFNLPRSPADYMHRIGRSGRAGEVGLALSLVDYED 363

Query: 354 IKHIDAIEK 362
             H   IEK
Sbjct: 364 FHHFKVIEK 372


>gi|307309898|ref|ZP_07589548.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|306909616|gb|EFN40110.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|315060597|gb|ADT74924.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           W]
 gi|323378840|gb|ADX51108.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11]
          Length = 457

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 207/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W     +S   PLE
Sbjct: 357 SDMLQIKLNWQTPPANSSILPLE 379


>gi|288904629|ref|YP_003429850.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           gallolyticus UCN34]
 gi|288731354|emb|CBI12905.1| putative ATP-dependent RNA helicase, DEAD/DEAH box family
           [Streptococcus gallolyticus UCN34]
          Length = 447

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 118/382 (30%), Positives = 182/382 (47%), Gaps = 11/382 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D    P +  A+ +  +  PT +Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFNDFNFKPYIREALAELKFTNPTEVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNK 117
             L++    V++    I  P+RELA Q+    ++  +     + +              K
Sbjct: 61  EKLDENSNNVQVV---ITAPSRELATQIYQATKQIAEKSETEIRVANYVGGTDKLRQIEK 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L +      V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LQSSQPHIVIGTPGRIYDLVKSGDLEIYKAHTFVVDEADMTLDMGFLDTVDKIAGTLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEKIKTTTVIADTI---DNWLVSTKGRDKNAQIL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K+    L   L   G  V  IHG+I  R R + ++  K+ + +
Sbjct: 235 EITKALNPYLAMIFVNTKERADELHSYLVSNGLKVAKIHGDIPPRERKRTMNQIKKLSYE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G +G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLNGIAITLYKPSDDSDI 354

Query: 358 DAIEKLIEKKVDWL--NGDLSS 377
             +EK+  K V  +  NG+   
Sbjct: 355 RELEKMGIKFVPKMLKNGEFQD 376


>gi|209918588|ref|YP_002292672.1| ATP-dependent RNA helicase DbpA [Escherichia coli SE11]
 gi|218553903|ref|YP_002386816.1| ATP-dependent RNA helicase DbpA [Escherichia coli IAI1]
 gi|293433706|ref|ZP_06662134.1| ATP-independent RNA helicase DbpA [Escherichia coli B088]
 gi|209911847|dbj|BAG76921.1| ATP-dependent RNA helicase [Escherichia coli SE11]
 gi|218360671|emb|CAQ98232.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           IAI1]
 gi|291324525|gb|EFE63947.1| ATP-independent RNA helicase DbpA [Escherichia coli B088]
 gi|320199384|gb|EFW73975.1| ATP-dependent RNA helicase DbpA [Escherichia coli EC4100B]
 gi|323947687|gb|EGB43690.1| DEAD/DEAH box helicase [Escherichia coli H120]
          Length = 457

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 207/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W     +S   PLE
Sbjct: 357 SDMLQIKLNWQTPPANSSILPLE 379


>gi|191165035|ref|ZP_03026879.1| ATP-independent RNA helicase DbpA [Escherichia coli B7A]
 gi|309797091|ref|ZP_07691489.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|190904807|gb|EDV64512.1| ATP-independent RNA helicase DbpA [Escherichia coli B7A]
 gi|308119261|gb|EFO56523.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
          Length = 457

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 207/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W     +S   PLE
Sbjct: 357 SDMLQIKLNWQTPPANSSILPLE 379


>gi|71030480|ref|XP_764882.1| RNA helicase-1 [Theileria parva strain Muguga]
 gi|68351838|gb|EAN32599.1| RNA helicase-1, putative [Theileria parva]
          Length = 598

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 122/409 (29%), Positives = 204/409 (49%), Gaps = 26/409 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQT----------GTG 50
           + F D+ L   ++ A+      +PT IQ++ +P VL   DV GI+ T          GTG
Sbjct: 192 LTFEDMKLPRPILKALRHKKIFEPTKIQMQAMPAVLLGRDVIGISPTGTLTKFNLFLGTG 251

Query: 51  KTASFVLPMLTILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNL---- 101
           KT  FV+PM+    +   R+ +     P  L++ P+RELA+Q+ D  + + +  +     
Sbjct: 252 KTLVFVIPMIMQSWEIELRLPIEPREGPFGLVICPSRELASQIYDITKYFAEYISKYDRP 311

Query: 102 --TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159
               A +IGG   + Q   ++ G  ++I TPGR+    N   + +     L  DEADR++
Sbjct: 312 KLYCACVIGGTGIKDQEHSIKSGVHMVIATPGRLNYFLNSRIINLTQCRYLCFDEADRII 371

Query: 160 DMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
           D+GF   I++I S V    QTLLFSAT+  ++Q+    F +      +      + +   
Sbjct: 372 DLGFDSEIKSIFSHVNNQHQTLLFSATIPSKIQE----FAKLTLTNPIVVNVGVSGSANK 427

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                     K+  L   L   + T    +IFC  K +V  +   L  +G    AIHG +
Sbjct: 428 NVKQVVVAVPKESKLPMLLQCLKKTPPPVLIFCENKADVEIINEYLILKGVEASAIHGGL 487

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            Q  R++ +S+FK     +++ +D+A++GLD P + HV NFD+P   ENY+HRIGRTGR 
Sbjct: 488 SQEERIESISDFKNHKKDVLIGTDIASKGLDFPSIQHVINFDLPRDMENYVHRIGRTGRR 547

Query: 340 GRHGKAFTLV-AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
           G  G A TL+   ED   +  ++ ++ +  + +   L +++   + ++I
Sbjct: 548 GEKGLATTLLDGSEDASSLINLKCILIESEEEMPECLKNIHVSEDALNI 596


>gi|331238187|ref|XP_003331749.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28 [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
 gi|309310739|gb|EFP87330.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28 [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
          Length = 834

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 129/432 (29%), Positives = 208/432 (48%), Gaps = 42/432 (9%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  L  +++  + + GY +P+PIQ + IPL L   D+ GIA+TG+GKTASFV+PMLT
Sbjct: 399 SWEESKLPLQILEIIDEVGYKEPSPIQRQAIPLGLNNRDLIGIAETGSGKTASFVIPMLT 458

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + K        R   P  LIL PTRELA Q+     K+          ++GG   E Q 
Sbjct: 459 YIGKLPPLTDDNRHLGPYALILAPTRELAQQIEVETNKFALRLGYRCVSIVGGKAMEEQA 518

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--- 173
             +  GA+++I TPGR+ D   R  L++     +V+DEADRM+++GF   +  I      
Sbjct: 519 LNMRDGAEIIIATPGRLKDCIERHVLVLGQCTYVVMDEADRMINLGFEEVVNFILDQLPL 578

Query: 174 -------------------------------VPFTRQTLLFSATMTDELQKVSENFLQNP 202
                                              RQT++FSATM   ++++++ +L+ P
Sbjct: 579 SNLKPDTEEAEDSSKMTSFVGGVEGFDLTGAKGLYRQTVMFSATMPPAVERLAKKYLRRP 638

Query: 203 KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLC 262
             + +       +T++        +  K        + +Q      I+F NQKK    L 
Sbjct: 639 AVVTIGVAGQAVDTVDQQVEFLPNEDKK--RGRLLEVLNQGHTPPIIVFVNQKKTADQLA 696

Query: 263 HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322
             + + G+S   +H   +Q  R   L++ + G   ++VA+DLA RG+D+PDVG V NF +
Sbjct: 697 KDISRAGWSTTTLHSGKNQEQREAALASLRAGESDILVATDLAGRGIDVPDVGLVVNFQM 756

Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI-EKLIEKKVDWLNGDLSSLNPP 381
               E Y+HRIGRTGRAG+ G A T +  +D   +  + +++++  V     +L+     
Sbjct: 757 AGTIEAYVHRIGRTGRAGKVGTAITFLTNDDADVMYDLKQEIMKSPVSKCPPELAKHEAA 816

Query: 382 LEKIDIAQHNHA 393
             K+  A    A
Sbjct: 817 QSKMSAAMKRRA 828


>gi|302656972|ref|XP_003020220.1| ATP-dependent RNA helicase, putative [Trichophyton verrucosum HKI
           0517]
 gi|291184030|gb|EFE39602.1| ATP-dependent RNA helicase, putative [Trichophyton verrucosum HKI
           0517]
          Length = 528

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 127/432 (29%), Positives = 209/432 (48%), Gaps = 19/432 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ LGL+P +V ++      +PT IQ   IP +++  D  G ++TG+GKT +F  P+L 
Sbjct: 100 SFSSLGLAPWLVSSLKAMEIKRPTAIQKSCIPEIIKGRDCIGGSRTGSGKTVAFAAPILH 159

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                         +IL PTRELA Q+ +  +      +L   L+ GG     Q   L +
Sbjct: 160 KW---SEDPFGIYAVILTPTRELALQIFEQVKAISAPQSLKPLLITGGSDMRPQAIGLSQ 216

Query: 122 GADVLICTPGRILDHFN----RGKLLMNNIEILVIDEADRMLDMG---FIPYIQNITSLV 174
              ++I TPGR+ DH         + +  + ++V+DEADR+L  G    +P ++   S +
Sbjct: 217 RPHIVIATPGRLADHIKSSGEDTIIGLKRVRMVVLDEADRLLTSGPGSMLPDVETCLSAL 276

Query: 175 PFTRQTLL--FSATMTDELQ----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
           P +       F+AT+T E++                 E++T ++T               
Sbjct: 277 PPSSDRQTLLFTATVTPEVRALKSMPRAKNKPPIFVTEISTENTTIPPTLKQTYLQVPLN 336

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            ++  L   L    ++ K+ IIFCN+ K    L   L +    V ++H  + Q  R+  L
Sbjct: 337 HREAFLQVLLSTEGNSSKSTIIFCNRTKTADLLERILRRLSHRVTSLHSLLPQSERVANL 396

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           S F+    +L+VA+D+AARGLDIP VG V N+DVP   ++YIHR+GRT RAGR G+A TL
Sbjct: 397 SRFRASAARLLVATDVAARGLDIPSVGLVINYDVPRNPDDYIHRVGRTARAGREGEAITL 456

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD- 407
           V + D++ + AIE  + K++        ++   + K  + +   + K   + +   G D 
Sbjct: 457 VGQRDVQLVLAIEARVGKQMVAWEEPGVNIESRIVKATVLKEVGSTKREAMGEIDEGRDV 516

Query: 408 --RRKKNYSSQK 417
             RR +     +
Sbjct: 517 LGRRVRKLKKVR 528


>gi|315182351|gb|ADT89264.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           furnissii NCTC 11218]
          Length = 442

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 122/419 (29%), Positives = 199/419 (47%), Gaps = 7/419 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + + T IQ + IP+ +   D+   ++TG+GKT +F+LPML
Sbjct: 1   MQFKDLGLDNRLLKTLAHFDFKQATQIQQQAIPVAMAGKDLLASSKTGSGKTLAFLLPML 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      R PR +IL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 61  HKALKTKALSARDPRGVILVPTRELAKQVYGELRTMLSGLSYTATLITGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG   ++ TPGR+ DH     L +  +E L++DEADRMLD+GF P +++I +     R+
Sbjct: 121 RRGPKFIVATPGRLADHLEHRSLFLEGLETLILDEADRMLDLGFAPQLRHIHNAAKHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  Q     +        +    S  +  +         +      L   +
Sbjct: 181 QTLLFSATLDHAQVNDIAYEMLNDAKHIAVGGSNEQHKDITQRFYLCDHLDHKEALLDRV 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  IIF   + +   L   L ++     A+ G+++Q  R  I+S F+    +++
Sbjct: 241 LDDADYRQVIIFTATRDDTERLTAKLNERKLKAVALSGSLNQVQRNTIMSQFERAVFKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDI +V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D      
Sbjct: 301 VTTDVASRGLDIANVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKR 360

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           +E  +++ + +     L G    L    + ++ A+    +      + +    +R K +
Sbjct: 361 VEAYLKQDIQFDVLEGLQGKFKGL-KVRQPVNKAKPQRGQAKPQAKKVAKKPVKRDKGF 418


>gi|302810291|ref|XP_002986837.1| hypothetical protein SELMODRAFT_124676 [Selaginella moellendorffii]
 gi|300145491|gb|EFJ12167.1| hypothetical protein SELMODRAFT_124676 [Selaginella moellendorffii]
          Length = 415

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 109/357 (30%), Positives = 185/357 (51%), Gaps = 7/357 (1%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P ++  +++AGY +PTP+Q + IP++LQ  +    A TG+GK+ +F+LP+L  L+K    
Sbjct: 32  PNLIKNLVEAGYKEPTPVQRQVIPVLLQERECFVCAPTGSGKSLAFILPILMKLKKSSPD 91

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
               R +IL PTRELAAQ+     +      +   LL                 D+L+ T
Sbjct: 92  G--IRAVILCPTRELAAQLITECRRLANGSKIRARLLTKR--LFKNPDFASLRCDILVST 147

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL-FSATMT 188
           P R+       K+ +  +E  ++DE+D++ ++GF+  I +I S    T      FSAT+ 
Sbjct: 148 PLRLDKLVKSEKIDLKRVEYFILDESDKLFELGFMQQIDSIVSACTRTNIVRALFSATLP 207

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
           + +++++   + +  RI +   +S +ET++   +    +  K  A   +    +      
Sbjct: 208 ETVEELARTIMHDAIRIVIGDRNSASETVQQKLMYAGNEEGKLLA--LKQFFKEGLSPPI 265

Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           I+F   K+    L  +L  +   V +IH +  Q  R   + NF+ G   +++A+DL ARG
Sbjct: 266 ILFVQCKERAKQLHKALLSEKLRVDSIHADRTQTQREIAVLNFRTGKTWILIATDLMARG 325

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +D   V  V N+DVP     YIHRIGR+GRAGR G A TL A+ED+  + +I  +++
Sbjct: 326 MDFKGVNWVINYDVPQDTTVYIHRIGRSGRAGRPGNALTLYAEEDVPLLRSIANVMK 382


>gi|207856830|ref|YP_002243481.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206708633|emb|CAR32955.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 457

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 136/382 (35%), Positives = 216/382 (56%), Gaps = 9/382 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF AQ   L+
Sbjct: 64  RIDVTLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  +S    Q P RIE++T     + +       +   + +   L Q L 
Sbjct: 181 LLFSATWPEAIAAISGRVQQQPIRIEIDTV----DALPAIEQQFFETSAHEKISLLQTLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN KK+   +C +L   G S  A+HG+++QR R + L  F  G+ +++V
Sbjct: 237 SQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +  A E+ +  + +
Sbjct: 297 ATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANIL 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPL 382
            ++++ K++WLN      + PL
Sbjct: 357 SEMLQLKLNWLNAPARQPSLPL 378


>gi|149198198|ref|ZP_01875245.1| ATP-dependent RNA helicase [Lentisphaera araneosa HTCC2155]
 gi|149138800|gb|EDM27206.1| ATP-dependent RNA helicase [Lentisphaera araneosa HTCC2155]
          Length = 542

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 122/415 (29%), Positives = 201/415 (48%), Gaps = 7/415 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P V  A+ +  +   TP+Q   +P+ L+  DV   AQTGTGKTA+F++ M   
Sbjct: 117 FLSMDLCPAVQRAIHEMDFKFCTPVQEGVLPISLKGQDVAAKAQTGTGKTAAFLISMYNH 176

Query: 63  LEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                    +   PR LIL PTRELA Q+  + E  GK  ++ V    GG+ F+ Q + L
Sbjct: 177 FVNNPQTEVKAGTPRALILAPTRELALQIGADAEGLGKYCDIRVETFFGGMDFDKQAQIL 236

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D+ + TPGR++D+  R  + +  +E L IDEADRMLDMGFIP ++ I   +P   +
Sbjct: 237 RGRVDIAVATPGRLMDYHRRKMINLREVEFLCIDEADRMLDMGFIPDVRKIVGYLPGRDK 296

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +    + T     ++       ++ E    +      ++     Y   + +   +    
Sbjct: 297 RITQLYSATLNQSVLNLAASWLNEKYEKVEINPETIVSKNVDQKVYTVTANQKENVILWH 356

Query: 240 QSQDTMKNGIIFCNQKKNVVN-LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              + +K  IIF N+K +         +     +  + G++ Q+ RM+IL  F+ G +Q+
Sbjct: 357 LKNEEVKRMIIFANRKFDCERLADKLYQYGVDKLELLTGDVPQKKRMRILEEFRSGKVQV 416

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A RG+ + DV HV N+++P   E+Y+HR+GRTGRA   GKA +   +     + 
Sbjct: 417 LVATDVAGRGIHVDDVSHVVNYELPYEPEDYVHRVGRTGRASALGKAISFADENSGFELP 476

Query: 359 AIEKLIEKKVDW---LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            IE  IE ++     L G     +    +   AQ     K++    K     + +
Sbjct: 477 EIECYIEMQLPAEVPLEGMTDDHDKKHSERKFAQKRGGNKHSGNRNKGGSRHQER 531


>gi|308804011|ref|XP_003079318.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
 gi|116057773|emb|CAL53976.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
          Length = 683

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 125/397 (31%), Positives = 195/397 (49%), Gaps = 9/397 (2%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP----- 58
            + G+S   V A+   G     PIQ   +   +   DV G A+TGTGKT +F LP     
Sbjct: 28  DNFGMSETTVQALRKRGVDALFPIQQAVLRPAMDGQDVVGRARTGTGKTLAFSLPVIEKL 87

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +      G    R P+ ++L PTRELA QV +         +   A + GG P   Q  K
Sbjct: 88  LSNGRGSGGRGYRNPKCIVLAPTRELAKQVENEIFITAPTLDT--ACVYGGTPIGQQESK 145

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+++ TPGRI+D  NR  L ++ IE +V+DEAD+ML++GF   ++ I    P  R
Sbjct: 146 LRRGVDIVVGTPGRIMDLMNRRALDLSEIEFVVLDEADQMLNVGFEEDVEAILHDCPAGR 205

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT LFSATM   ++++++ FL+    +      +  +  +   + T A        +   
Sbjct: 206 QTFLFSATMPQWVKQITKKFLKAQHVVVDLVGDNKQKVADTIDLMTCAVSQTSRTSIVMD 265

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L +        I   Q K   +   +   +  S   +HG+I Q  R + L  F++    +
Sbjct: 266 LVTVYAKDKKCICFTQTKRAADELTAALGKRVSCEVLHGDIAQAQRERTLQRFRDNRFTV 325

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLDI DV  V ++++PN  E+++HR GRTGRAG+ G A  +    +   I 
Sbjct: 326 LIATDVAARGLDISDVDLVIHYELPNDVESFVHRCGRTGRAGQQGAAIAMYTDRESYMIR 385

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
            I+K  E   D+   D+ S    ++   +   N   K
Sbjct: 386 RIQK--ETGCDFRAIDIPSSTEVMDACAVTASNALSK 420


>gi|169600899|ref|XP_001793872.1| hypothetical protein SNOG_03302 [Phaeosphaeria nodorum SN15]
 gi|118575175|sp|Q0UY62|DBP3_PHANO RecName: Full=ATP-dependent RNA helicase DBP3
 gi|111068913|gb|EAT90033.1| hypothetical protein SNOG_03302 [Phaeosphaeria nodorum SN15]
          Length = 592

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 118/392 (30%), Positives = 193/392 (49%), Gaps = 7/392 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F  L ++ +   A   AG+  PTPIQ  T P +L   D+ G+A+TG+GKT +F +P +
Sbjct: 179 VNFKYLPVTDESQRAPF-AGFTAPTPIQAATWPFLLSGRDMVGVAETGSGKTLAFGVPCV 237

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +       R     ++       A    +      +      + + G   +       
Sbjct: 238 RAILSLPKDKRKGIKAVIVSPTRELAVQIYDQLVALAHPAGLSVVCVYGGVPKDPQVAAC 297

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R A +++ TPGR+ D    G   ++N + +V+DEADRMLD GF   I+ I S  P  RQT
Sbjct: 298 RKAHIVVATPGRLNDLIGDGSADLSNADYVVLDEADRMLDKGFEEPIRQIISQTPKKRQT 357

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA------TYAQYSKKCAL 234
           L+F+AT    ++ ++  F+ +P RI +    S                  +A+  +   L
Sbjct: 358 LMFTATWPPSVRDLASTFMVSPVRITIGDNQSGELRANVRIKQLVEVLDPHAKEQRLLQL 417

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L+Q    ++     ++FC  KK  + + + +  +GF V  IHG++ Q  R   L+ FKEG
Sbjct: 418 LKQYQSGKNKDDRILVFCLYKKEAMRIENFIRMKGFRVGGIHGDLSQEKRSASLAAFKEG 477

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + L+VA+D+AARGLDIP V  V N   P  AE+Y+HRIGRTGRAG+ G A T   + D 
Sbjct: 478 QVPLLVATDVAARGLDIPAVKLVINVTFPLTAEDYVHRIGRTGRAGKEGLAITFFTEHDK 537

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
               ++  +++     +  +L      ++K +
Sbjct: 538 GLSGSLINVLKAANQEVPEELLKFGTTVKKKE 569


>gi|149047667|gb|EDM00337.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Rattus norvegicus]
          Length = 546

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 121/492 (24%), Positives = 207/492 (42%), Gaps = 41/492 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F  +GL P+++ AV D G+ +PT IQ K IPL L+  D+   A+TG+GKTA++ +PM   
Sbjct: 9   FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQ 115
            L     G    +  R L+L PT+ELA Q     ++        V +            +
Sbjct: 69  LLHKKATGPVMEQAVRGLVLVPTKELARQAQSMIQQLASYCARDVRVANVSAAEDSASQR 128

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              +E+   V+      +     +   L +++E+LV+DEAD +   GF   ++++   +P
Sbjct: 129 AVLMEKPDVVVGTPSRILNHLQQKNLKLRDSLELLVVDEADLLFSFGFEDELKSLLCHLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q  L SAT  +++Q + E  L NP  +++             F         K  LL
Sbjct: 189 RIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL+        ++F N  +    L   LE+     C ++G +  RSR  I+S F +G 
Sbjct: 249 YALLKLSLIRGKALLFVNTLERGYRLRLFLEQFSIPSCVLNGELPLRSRCHIISQFNQGL 308

Query: 296 IQL---------------------------MVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
                                                ARG+D   V  V NFD+P  AE 
Sbjct: 309 YDCVIATDAEILGPQVKAKRQGRGSKGDKASDPESGVARGIDFHHVSAVLNFDLPPTAEA 368

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           Y+HR GRT RA   G   T V   +   +  IE+L+  +       L      +E+I+  
Sbjct: 369 YVHRAGRTARANNPGIVLTFVLPTEQSSLGKIEELLSGEGQA--PILLPYQFQMEEIESF 426

Query: 389 QHNHARKNNPIPQKSTGFDR----RKKNYSSQKSHIPLKESEK-ISKLQQDIQENDADSL 443
           ++        + +++    R    +++   S+K     +++ + +  L+ D+  + A   
Sbjct: 427 RYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVK 486

Query: 444 GFRGNMPAFMLP 455
              GN+P +++P
Sbjct: 487 PHLGNVPDYLVP 498


>gi|156101247|ref|XP_001616317.1| DEAD/DEAH box ATP-dependent RNA helicase [Plasmodium vivax SaI-1]
 gi|148805191|gb|EDL46590.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Plasmodium
           vivax]
          Length = 599

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 121/380 (31%), Positives = 183/380 (48%), Gaps = 7/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F DL +   +   + +  +V  T IQ K IP  L   D+ G A+TG+GKT +F++P + 
Sbjct: 147 KFEDLDICEALKKGLKELNFVTLTEIQAKCIPHFLNGKDILGAAKTGSGKTLAFLVPSIN 206

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +             LI+ PTREL  Q+    +   K    T  ++IGG+    + KK  
Sbjct: 207 ILYNIKFLPKNGTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEEKKKFI 266

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEIL-VIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            G ++LI TPGR+LDH    K  +    I  +IDEADR+L +GF   I  I   +P  RQ
Sbjct: 267 HGINILIATPGRLLDHMQNTKEFIYKNLISLIIDEADRLLQIGFEEEINLIVKRLPKKRQ 326

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT T +++ +    LQ P  IEV T  +T E +             K  LL    
Sbjct: 327 TALFSATQTTKVENLIRLSLQKPIFIEVTTKIATVERL---QQGYALVDEDKRFLLLFTF 383

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  ++F N   +V      L         IHG   Q  R+K  S F      ++
Sbjct: 384 LKRNISKKIMVFFNNCMSVQFYNDLLNYIDIPTFCIHGKKKQNKRLKSFSEFSAAQSAIL 443

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHID 358
           + +++AARGLDIP+V ++  +D P+ ++ YIHR+GRT R     G A   + K ++K ++
Sbjct: 444 LCTNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCRGKDSSGSAIIFLMKHELKFLN 503

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + K     ++    D S L
Sbjct: 504 YL-KFYNIPINQFAYDPSKL 522


>gi|289616575|emb|CBI56740.1| unnamed protein product [Sordaria macrospora]
          Length = 592

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 122/408 (29%), Positives = 186/408 (45%), Gaps = 31/408 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D GL P ++  V  AGY  PTPIQ   IP + Q HDV  IAQTG+GKTA++++P++ 
Sbjct: 134 NFRDAGLHPAMLRNVELAGYDVPTPIQRYCIPSISQGHDVIAIAQTGSGKTAAYLIPIIN 193

Query: 62  ILEKGRARVRMPRTL-------------------ILEPTRELAAQVADNFEKYGKNYNLT 102
            L     ++  PR                     I+ P+RELA Q+ +   K+     L 
Sbjct: 194 KLMGKAKKLAAPRPNPATYQPGIDQPCRAEPLVVIVVPSRELAVQIFNEARKFCYRSMLR 253

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL-LMNNIEILVIDEADRMLDM 161
             +L GG     Q  +L +G DVL+ +PGR++D  +R ++  +  +  +VIDEAD MLD 
Sbjct: 254 PCVLYGGGSMRDQLDQLSKGCDVLVASPGRLIDFMDRPEVLSLRRVRYMVIDEADEMLDD 313

Query: 162 GFIPYIQNIT---SLVPFTRQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETI 217
            +      I           + +LFSAT     +     +   N  R+ V    ST   I
Sbjct: 314 DWKDEFDQILSGGDQEEGNIKYMLFSATFPKSARDLARTHLADNHVRLRVGRAGSTHSNI 373

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
           +   +       K+  L      +       IIF N K+    L   L  +G    ++HG
Sbjct: 374 KQDVIWVEPYLKKQACLDLL---NTVPPGRTIIFVNSKRAADELDDFLFNKGVPCVSMHG 430

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNR----AENYIHRI 333
              QR R   +  F+ G   +++ + + ARG+D+ +V HV NFD+P+      E Y HRI
Sbjct: 431 ERTQREREAAMRAFRAGRSPVLITTAVTARGIDVRNVLHVINFDLPSAMYGGIEEYTHRI 490

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           GRTGR G  G A +   + D      + + + +    +   L S  P 
Sbjct: 491 GRTGRIGHRGLATSFYTERDEDLASVLTRTLLETGQEVPDFLQSYIPE 538


>gi|212275171|ref|NP_001130422.1| hypothetical protein LOC100191518 [Zea mays]
 gi|194689078|gb|ACF78623.1| unknown [Zea mays]
 gi|224029523|gb|ACN33837.1| unknown [Zea mays]
          Length = 613

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 133/490 (27%), Positives = 212/490 (43%), Gaps = 43/490 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL  +V+ A+ + G  KPT IQ   +P VL    V   + TG+GKT +++LP++ 
Sbjct: 96  SFEELGLGEEVMSALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQ 155

Query: 62  ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +     + R PR ++L PTREL  QV    +    +      ++ GG     Q
Sbjct: 156 LLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVYRVAKSISHHARFRSTMVSGGTRLRPQ 215

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---- 171
              L    D+++ TPGRILDH   G ++  +I+ LV+DEAD M D GF P I+       
Sbjct: 216 EDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLK 275

Query: 172 ----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
                      QT+L +ATMT  +QK+ +   +    +  ++      T  H F+     
Sbjct: 276 NRAAKPDDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTSSFQKRVSTARHDFIKLSGA 335

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
            +K  ALLQ L  S       ++FCN   +   + H L +   S    HG +    R++ 
Sbjct: 336 ENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLTENHISTVNYHGEVPAEERVEN 395

Query: 288 LSNFKEGTIQLMVASDLAARGLDIP-DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
           L+ F+                  +  DV HV  FD P+ + +Y+HR GRT R G  GK  
Sbjct: 396 LNKFRNEEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVT 455

Query: 347 TLVAKEDIKHIDAIEKLIEK--KVDWL----------------NGDLSSLNPPLEKIDIA 388
           ++VAK+D+     IE+ ++K   ++ L                 G  S L      + + 
Sbjct: 456 SIVAKKDVALATRIEEAMKKNESLEALTTNNVRRPTSSQSVNTKGRPSRLVKTSNALKVV 515

Query: 389 QHNHAR------KNNPIPQKSTGFDRR---KKNYSSQKSHIPLK-ESEKISKLQQDIQEN 438
                R      +++  P+ +T   RR   K    + KS  P K +  K ++    + ++
Sbjct: 516 SQKGRRGVSLSSRSSRAPKDTTSTRRRSPPKSQAKATKSSAPRKAKPVKPTQSSAKVSKS 575

Query: 439 DADSLGFRGN 448
            A   G R  
Sbjct: 576 KAKPEGRRSK 585


>gi|56413419|ref|YP_150494.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362342|ref|YP_002141979.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56127676|gb|AAV77182.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197093819|emb|CAR59302.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
          Length = 457

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 134/373 (35%), Positives = 212/373 (56%), Gaps = 9/373 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF AQ   L+
Sbjct: 64  RIDVSLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR LDH  +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQT
Sbjct: 121 HAPHIIVATPGRQLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  +S    Q P RIE++T     + +       +   + +   L Q L 
Sbjct: 181 LLFSATWPEAIAAISGRVQQQPIRIEIDTV----DALPAIEQQFFETSAHEKISLLQTLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN KK+   +C +L   G S  A+HG+++QR R + L  F  G+ +++V
Sbjct: 237 SQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +  A E+ +  + +
Sbjct: 297 ATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANIL 356

Query: 361 EKLIEKKVDWLNG 373
            ++++ K++WLN 
Sbjct: 357 SEMLQLKLNWLNA 369


>gi|16764999|ref|NP_460614.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167992838|ref|ZP_02573934.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|197262502|ref|ZP_03162576.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|16420182|gb|AAL20573.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|197240757|gb|EDY23377.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205329063|gb|EDZ15827.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261246847|emb|CBG24663.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993587|gb|ACY88472.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158183|emb|CBW17681.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912646|dbj|BAJ36620.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224281|gb|EFX49344.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129924|gb|ADX17354.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988542|gb|AEF07525.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 457

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 134/374 (35%), Positives = 213/374 (56%), Gaps = 9/374 (2%)

Query: 2   DFADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F+ L  L    +  + + GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L
Sbjct: 3   TFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119
             ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF AQ   L
Sbjct: 63  HRIDVTLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +++ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQ
Sbjct: 120 QHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  + +  +S    Q P RIE++T     + +       +   + +   L Q L
Sbjct: 180 TLLFSATWPEAIAAISGRVQQQPIRIEIDTV----DALPAIEQQFFETSAHEKISLLQTL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            SQ    + ++FCN KK+   +C +L   G S  A+HG+++QR R + L  F  G+ +++
Sbjct: 236 LSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARIL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +  A E+ +  + 
Sbjct: 296 VATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANI 355

Query: 360 IEKLIEKKVDWLNG 373
           + ++++ K++WLN 
Sbjct: 356 LSEMLQLKLNWLNA 369


>gi|315128153|ref|YP_004070156.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315016666|gb|ADT70004.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 432

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 149/427 (34%), Positives = 238/427 (55%), Gaps = 18/427 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGL P+++  + D  Y +PTPIQ K IP +L   D+   A TG+GKTA+F LPML 
Sbjct: 9   NFNELGLIPELIARLSDLEYSQPTPIQAKAIPSILAGSDLIAGANTGSGKTATFALPMLQ 68

Query: 62  ILEKGR------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113
            L   +      ++      LIL PTRELA QVAD+ + Y  N+N  +    + GG+   
Sbjct: 69  TLFLAQGAKKAASKGNFVTGLILVPTRELAVQVADSVKSYSANFNGAIKTVAVFGGVSVN 128

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L  GAD+++ TPGR+LD  +   + ++ +  LV+DEADRML +GF   +  + +L
Sbjct: 129 TQMQALRGGADIIVATPGRLLDLISSNAIKLDKVSTLVLDEADRMLSLGFTEELAELLAL 188

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  +QT+LFSAT  +++ ++++  L NP  I+V +   +        V    + +    
Sbjct: 189 MPAKKQTMLFSATFPEQVTQLTQKLLTNPVEIQVQSKDESTLVQRVFTVNKGEKTTVLAH 248

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L++Q        +  +IF N KK+  +L   LEK+G +    HG+  Q  R +++  FK 
Sbjct: 249 LIKQHKW-----RQALIFVNAKKDCEHLASKLEKRGVNAQVFHGDKGQSERTRVIEKFKA 303

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I++++A+D+AARGLDI  +  V NF++P    +Y+HRIGR+GRAG  G A +L+  +D
Sbjct: 304 GEIEVLIATDIAARGLDIEKLPVVINFNLPRSPADYMHRIGRSGRAGEVGLALSLIDYDD 363

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
             H   IEK  + K+     +++        +D AQ   A KN+    K  G  ++KK  
Sbjct: 364 FHHFRIIEK--KNKLRLEREEVTGFAVNQGNLDAAQ---ALKNDKPMAKPEGTGKKKKKK 418

Query: 414 SSQKSHI 420
           S+Q+  +
Sbjct: 419 SNQEDDV 425


>gi|261194144|ref|XP_002623477.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis
           SLH14081]
 gi|239588491|gb|EEQ71134.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis
           SLH14081]
          Length = 465

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 135/427 (31%), Positives = 222/427 (51%), Gaps = 29/427 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +  A    GY  PTPIQ ++IPL LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 57  SFKDLGIIDSLCEACETLGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQ 116

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     + +    LIL PTRELA Q++  FE  G   ++  A+++GG+    Q   L +
Sbjct: 117 AL---MEKPQSLFGLILAPTRELAYQISGAFEALGSLISVRCAVIVGGMDMVPQAIALGK 173

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR +    N     + N++ LV+DEADR+LD+ F P +  I  ++P  R+T
Sbjct: 174 KPHIVVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRT 233

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM+ +++ +    L +  R+    P++                        +L  
Sbjct: 234 YLFSATMSSKVESLQRASLSSGLRLPSFIPTNIKTLP-------------------RLSL 274

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ I+F         L   L   GF    +HG + Q SR+  LS F+  +  ++V
Sbjct: 275 NEYAGQSAIVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSSRLGALSKFRSRSRDILV 334

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP V  V NFD+P  ++ YIHR+GRT RAG+ G AF +V + D++    I
Sbjct: 335 ATDVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFNIVTQYDLEVWLRI 394

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E  + KK++    +   +    +++  AQ +   +   +       ++R    ++ +   
Sbjct: 395 ENALGKKLEEYKVEKEEVMVLSDRVGEAQRHAITEMKDL------HEKRGSRGATLRGRR 448

Query: 421 PLKESEK 427
           P K +++
Sbjct: 449 PAKGAKR 455


>gi|224043524|ref|XP_002197738.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Taeniopygia
           guttata]
          Length = 817

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 118/392 (30%), Positives = 191/392 (48%), Gaps = 11/392 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F+D  LS K +  + ++ Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P +  
Sbjct: 13  FSDFPLSKKTLKGLQESQYRVVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALEL 72

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  +          LI+ PTRELA Q      K GKN+  +  L+IGG   + +++++  
Sbjct: 73  LYRQQWTSADGLGVLIISPTRELAYQTFKVLRKVGKNHEFSAGLIIGGKDLKEESERIHH 132

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +           +++++L++DEADR+LDMGF   +  I   +P  RQTL
Sbjct: 133 INMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENLPKKRQTL 192

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L++P+ + V+   +   T             ++   +      
Sbjct: 193 LFSATQTKSVKDLARLSLKDPEYVWVHE-KAKFSTPATLDQNYVVCELQQKVNMLYSFLR 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGF--SVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               K  I+F +  K V  L     K      V A+HG   Q  RM++ + F      ++
Sbjct: 252 THLKKKTIVFFSSCKEVQYLFRVFCKLQPGLPVLALHGKQQQMKRMEVYTCFVRKKAAVL 311

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V  FD P  A  YIHR+GRT R    G+A  ++   + K +  
Sbjct: 312 FATDIAARGLDFPAVNWVIQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEKGM-- 369

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
           +E+L ++KV      +S +    EK+   Q  
Sbjct: 370 VEQLAQRKVP-----ISEIKINPEKLTDIQKR 396


>gi|164658197|ref|XP_001730224.1| hypothetical protein MGL_2606 [Malassezia globosa CBS 7966]
 gi|159104119|gb|EDP43010.1| hypothetical protein MGL_2606 [Malassezia globosa CBS 7966]
          Length = 653

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 131/393 (33%), Positives = 204/393 (51%), Gaps = 18/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F    +   ++  +  A Y  PTP+Q  +IP+V    D+ G AQTG+GKT  F+ P+  
Sbjct: 183 EFTHPPVDEHLISNIRLARYSTPTPVQKYSIPIVGAGRDLMGCAQTGSGKTGGFLFPILS 242

Query: 60  ----------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                              +   P  LIL PTREL +Q+ +   K+     +  A++ GG
Sbjct: 243 ALFTHGPPPMPPQPPMYGRQKAFPSVLILAPTRELVSQIHEEARKFTYRSWVRPAVVYGG 302

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
               AQ +++ERG D+L  TPGR++D   RG++ + N+  LV+DEADRMLDMGF P I+ 
Sbjct: 303 AEMGAQLRQIERGCDMLSATPGRLVDLIERGRISLANVRFLVLDEADRMLDMGFEPQIRR 362

Query: 170 IT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I           RQTL+FSAT    +Q ++++FL+    + V    ST+E I        
Sbjct: 363 IVLGEDMPGVMDRQTLMFSATFPQNIQMLAKDFLKEYVFLSVGRVGSTSENITQKIEYVE 422

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            +  +   +L  +L +  T    +IF   K+    L   L     +  +IHG+  QR R 
Sbjct: 423 DRDKQS--MLLDVLAAMPTSGLTLIFVETKRMADMLSDFLIYSNIAATSIHGDRTQRERE 480

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A
Sbjct: 481 YALDLFRSGRTPILVATAVAARGLDIPNVTHVVNYDLPSDIDDYVHRIGRTGRAGNIGHA 540

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
                + +   +  + KL+++    +   L ++
Sbjct: 541 TAFFNRNNRNIVRDLVKLLQEANQEVPSWLENV 573


>gi|71027499|ref|XP_763393.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68350346|gb|EAN31110.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 451

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 101/392 (25%), Positives = 177/392 (45%), Gaps = 19/392 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ DAG+  P+ +Q +TIP  +   D+   A++G GKTA FVL +L  
Sbjct: 56  FRDFFLKPEILRAISDAGFEHPSEVQHETIPHAITGVDILCQAKSGMGKTAVFVLSILQQ 115

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL--- 119
           L+      +      ++P   ++     +  +               +P           
Sbjct: 116 LDVEAEEGKRDAEDNVKPVCRVSCIGISHTRELAFQIKNEFDRFSKYLPQVRCEVVYGGV 175

Query: 120 ------------ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM-GFIPY 166
                        +   +L+ TPGR+L       L M++++  V+DE D+ L+       
Sbjct: 176 PIQKDVAMLKDPAKTPHILVGTPGRLLALVKAKHLNMDSVKHFVLDECDKCLEKLDMRQD 235

Query: 167 IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
           +Q+I    P  +Q + FSATM ++++++ + F+Q+P  + V+  S         +    A
Sbjct: 236 VQSIFLSTPKKKQVMFFSATMNNDIRELCKRFMQSPVEVFVDDESKLTLHGLLQYYVKLA 295

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           +  K        L         IIF       V L + L +  F   AIH  +DQ  R+ 
Sbjct: 296 ESDKNR--KLNDLLDTLEFNQVIIFVKSVSRAVTLNNLLTECNFPSIAIHAGLDQSERIN 353

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
             + FK    ++MVA+DL  RG+D+  V  V N+D+P+  ++Y+HR+GR GR G  G A 
Sbjct: 354 RYTQFKNFDKRIMVATDLFGRGIDVERVNIVINYDMPDSTDSYLHRVGRAGRFGTKGLAI 413

Query: 347 TLV-AKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
           T V + ED   ++ ++K  E  +  +   + +
Sbjct: 414 TFVSSPEDSSQLEDVQKRFEVNISEIPATIDT 445


>gi|255075181|ref|XP_002501265.1| predicted protein [Micromonas sp. RCC299]
 gi|226516529|gb|ACO62523.1| predicted protein [Micromonas sp. RCC299]
          Length = 432

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 112/371 (30%), Positives = 179/371 (48%), Gaps = 14/371 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F DL    GL   ++  + DAG+ +PTPIQ + IP++L+  ++  +A TG+GKT +F+L
Sbjct: 29  TFEDLRTVHGLGRAMLQRLRDAGFHEPTPIQRQAIPILLEGSELLAVAPTGSGKTLAFLL 88

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           PM+T L         PR L+L PT+ELA Q     +   +  N    +        A   
Sbjct: 89  PMVTKLAAKDDEAGGPRALLLSPTKELAQQSFRILKLLCRGTNTLRCVWSS-----ATQN 143

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ-NITSLVPF 176
                 D+L+ TP R+     + K+ +  +  LV+DEAD++ +MGF+  +   + +    
Sbjct: 144 NEFAKVDILVATPLRLKSLIEKNKVSLGAVRYLVLDEADKLFEMGFVEQVDAAVAACDGP 203

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
                LFSAT+ + ++ ++ + +  P R+ V   +S +  I    V    +  K      
Sbjct: 204 NITRALFSATLPETVENLARSVMTQPIRLTVGERNSASGAIAQSLVFCGQERGKLL--AL 261

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + L  +      I+F   K     L   L   G  +  IH  +    R   +  F+ G  
Sbjct: 262 RQLIDRGIKPPIIVFVQSKDRAKQLAKELSGDGLHLGLIHAAMSDAKRRAQVDRFRAGDT 321

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE--DI 354
            ++VA+DL ARG+D   V  V N+D P    +YIHRIGR+GRAGR G A TL  +E  D 
Sbjct: 322 WVLVATDLMARGMDFVGVSTVINYDFPGSPHSYIHRIGRSGRAGRPGAAVTLFTEEDADR 381

Query: 355 KHIDAIEKLIE 365
             + AI  +++
Sbjct: 382 GDLRAIANVMK 392


>gi|192359134|ref|YP_001980830.1| DbpA RNA binding domain family [Cellvibrio japonicus Ueda107]
 gi|190685299|gb|ACE82977.1| DbpA RNA binding domain family [Cellvibrio japonicus Ueda107]
          Length = 469

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 206/368 (55%), Gaps = 7/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L LS  ++  +    Y   TPIQ +++P VL   D+   A+TG+GKTA+F + +L 
Sbjct: 16  TFSTLPLSRAMLDNLASLEYTSMTPIQAESLPWVLAGRDLIAQAKTGSGKTAAFGIGLLE 75

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+     V+    L+L PTRELA QVA    +  +  +    L +  G+    Q   LE
Sbjct: 76  KLQVDSFAVQ---ALVLCPTRELADQVAKELRRLARFTHNIKILTLCGGVAIGPQLGSLE 132

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA +++ TPGRI+DH  +G L ++ ++ LV+DEADRMLDMGF   I  + +     RQT
Sbjct: 133 RGAHIVVGTPGRIVDHLRKGSLHLDRLQQLVLDEADRMLDMGFADDINTVIASANSERQT 192

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +Q++S  + ++P R+ V +  ++ +  +H +            +      
Sbjct: 193 LLFSATYPANIQQMSARYQRDPVRVTVESLHTSQQIRQHFYELAEGDSRTSAVINLL--- 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +     + +IFCN K     L   L+ +  +  A+HG+++Q+ R ++L  F   +  +++
Sbjct: 250 AHFQPASTLIFCNTKAECEELADGLQAKKVAALALHGDMEQKERDRVLVRFANKSCAVLI 309

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI D+  V N+++   +E ++HRIGRTGRAG  G A +LVA  +I  ++ +
Sbjct: 310 ATDVAARGIDIKDLDAVINYELARDSEVHVHRIGRTGRAGAEGLALSLVAPREIVRVNRL 369

Query: 361 EKLIEKKV 368
           E  + + +
Sbjct: 370 EDYLRQTI 377


>gi|170095563|ref|XP_001879002.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164646306|gb|EDR10552.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 654

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 128/462 (27%), Positives = 216/462 (46%), Gaps = 14/462 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F+DL +S      +  A ++  T IQ K++P+ L+  DV G AQTG+GKT +F++P +  
Sbjct: 3   FSDLPISDATKRGLKKAFFMDMTDIQTKSLPISLKGKDVLGAAQTGSGKTLAFLVPVLEI 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  +          LI+ PTRELA Q+ D     G  ++ +  L+IGG   + +  +L R
Sbjct: 63  LYRRKWGAADGLGALIISPTRELAVQIFDVLRSIGGYHSFSAGLVIGGKNLKDERDRLSR 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +           +N+++LV+DEADR+LDMGF   +  + S +P +RQTL
Sbjct: 123 MNILVATPGRLLQHMDQTVGFDADNLQVLVLDEADRILDMGFQKTLAALLSHLPKSRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  +  ++   L++P  + +N  SS+  T+       Y        L       
Sbjct: 183 LFSATQTQSVSDLARLSLKDPVYVGINVASSSTSTMPQNLEQHYVICELDKKLDVLWSFI 242

Query: 242 QDTMKNGIIFCN-QKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +++ II      K V  +  +  K    V    +HG   Q +R+ + + F   +  +
Sbjct: 243 KTHLQSKIIVFMSSCKQVRFVFETFCKMHPGVPLLHLHGKQKQSARLTMYTKFSSISHAV 302

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+AARGLD P V  V   D P  A+ YIHR+GRT R    GKA   +   + + + 
Sbjct: 303 LFATDIAARGLDFPSVDWVLQMDAPEDADTYIHRVGRTARYESKGKALLFLMPSEEEGMK 362

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
               L ++ +D     + +     + I+    N A ++  I          ++ + S   
Sbjct: 363 V--ALQKRAIDVKQIKIRA--SKTQTIENQLQNLAFQDPEIKYLG------QRAFVSYLR 412

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
            I + + + I KL++   +  A+SLG  G      L K   K
Sbjct: 413 SIYIHKDKSIFKLEELPVDRFAESLGLPGTPKIKFLNKEIAK 454


>gi|311997|emb|CAA48790.1| eukaryotic translation initiation factor 4A (eIF-4A) [Drosophila
           melanogaster]
          Length = 402

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 198/377 (52%), Gaps = 6/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F + +L 
Sbjct: 31  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQ 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 91  QIDTSIRE---CQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR           V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 148 GCHVVVGTPGRVYDMINRKLRTQYIKLF-VLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F+++P  I V     T E I+  +V    +  K   L       
Sbjct: 207 LLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDL--YD 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 265 TLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  +D + +  IE
Sbjct: 325 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIE 384

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 385 QFYHTTIEEMPANIADL 401


>gi|309812379|ref|ZP_07706134.1| DEAD/DEAH box helicase [Dermacoccus sp. Ellin185]
 gi|308433684|gb|EFP57561.1| DEAD/DEAH box helicase [Dermacoccus sp. Ellin185]
          Length = 522

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 208/386 (53%), Gaps = 9/386 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLG+   +V  +   G   PTPIQ  T+P  L+  DV G  +TG+GKT +F+LP++ 
Sbjct: 3   SFSDLGVPAVLVKTLDKLGIDTPTPIQAATLPDSLKGRDVLGRGRTGSGKTFAFLLPLVA 62

Query: 62  ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L++ R  +    PR+L+L PTRELA Q+AD+ +       L+   + GG+    Q K L
Sbjct: 63  RLDETRYEIDAYRPRSLVLAPTRELANQIADSLKPLAAAAGLSYTTVFGGVGQNPQVKAL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G DVLI  PGR+ D  ++G   ++++E+ ++DEAD M DMGF+P ++ I + VP   Q
Sbjct: 123 KAGVDVLIACPGRLEDLMSQGFCDLSDVEVCILDEADHMADMGFLPGVKRILTKVPREAQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT+   +  + + FL NP   + ++  S   T+EH   A  +             
Sbjct: 183 HLLFSATLDGGIDVLVKKFLSNPVTHQADSAQSPVATMEHHVFAVDSDSRIDVLTDL--- 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++F   K     L   L  +G     +HGN+ Q +R++ L  F  G ++ +
Sbjct: 240 --VSAPGRTVVFTRTKHGAKKLAKQLAGRGIPAVDLHGNLSQNARVRNLDAFHSGAVETL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   TL+  +    + +
Sbjct: 298 VATDIAARGIHVDDVSLVVHADPPTEHKAYLHRSGRTARAGAAGTVITLMTPDQRGDVKS 357

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKI 385
           + ++   K++    ++++ +P LEK+
Sbjct: 358 LLRM--AKINATTTNVTASHPLLEKL 381


>gi|300926734|ref|ZP_07142509.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|301326919|ref|ZP_07220211.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
 gi|300417310|gb|EFK00621.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|300846390|gb|EFK74150.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
          Length = 457

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 131/383 (34%), Positives = 206/383 (53%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+L H  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLAHLQKGTISLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W     +S   PLE
Sbjct: 357 SDMLQIKLNWQTPPANSSILPLE 379


>gi|218694919|ref|YP_002402586.1| ATP-dependent RNA helicase DbpA [Escherichia coli 55989]
 gi|218351651|emb|CAU97366.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           55989]
          Length = 457

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 131/383 (34%), Positives = 206/383 (53%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+L H  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLAHLQKGTISLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W     +S   PLE
Sbjct: 357 SDMLQIKLNWQTPPANSSILPLE 379


>gi|85115638|ref|XP_964910.1| hypothetical protein NCU09093 [Neurospora crassa OR74A]
 gi|28926707|gb|EAA35674.1| hypothetical protein NCU09093 [Neurospora crassa OR74A]
          Length = 593

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 114/408 (27%), Positives = 186/408 (45%), Gaps = 31/408 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL P ++  V  AGY  PTPIQ   +P + Q HDV  IAQTG+GKTA++++P++ 
Sbjct: 134 SFRAAGLHPAMLRNVELAGYDVPTPIQRYCVPAISQGHDVIAIAQTGSGKTAAYMIPIIN 193

Query: 62  ILEKGRARVRMPRTL-------------------ILEPTRELAAQVADNFEKYGKNYNLT 102
            L     ++  PR                     ++ P+RELA Q+ +   K+     L 
Sbjct: 194 KLMGKAKKLAAPRPNPVTYQPGIDQPCRAEPLVVVVCPSRELAVQIFNEARKFCYRSMLR 253

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL-LMNNIEILVIDEADRMLDM 161
             ++ GG P   Q +++ +G D+L+ +PGR++D  +R  +  +  +  +VIDEAD ML  
Sbjct: 254 PCVIYGGGPMREQMEQIAKGCDILVASPGRLIDFMDRPDILSLRRVRYMVIDEADEMLHD 313

Query: 162 GFIPYIQNIT---SLVPFTRQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETI 217
            +   +  I           + +LFSAT     +   + +   N  R+ V    ST   I
Sbjct: 314 DWKDELDQILSGGDQEEGNIKYMLFSATFPKAARDLATTHLADNHVRLRVGRAGSTHSNI 373

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
           +   +       K+  L      +       IIF N K+    L   L  +G    ++H 
Sbjct: 374 KQDVIWVEPYLKKQACLDLL---NTVPPGRTIIFVNSKRAADELDDFLFNKGVPCVSMHS 430

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNR----AENYIHRI 333
           +  QR R   +  F+ G   +++ + + ARG+D+ +V HV NFD+P+      E Y+HRI
Sbjct: 431 DRTQREREAAMRAFRAGRSPVLITTAVTARGIDVRNVLHVINFDLPSTMYGGIEEYVHRI 490

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           GRTGR G  G A +   + D      + + + +    +   L    P 
Sbjct: 491 GRTGRIGHRGLATSFYTERDEDLASVLTRTLLETGQEVPDFLQQYIPE 538


>gi|325977606|ref|YP_004287322.1| ATP-dependent RNA helicase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177534|emb|CBZ47578.1| ATP-dependent RNA helicase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 447

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 119/382 (31%), Positives = 181/382 (47%), Gaps = 11/382 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D    P +  A+ +  +  PT +Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFNDFNFKPYIREALAELKFTNPTEVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNK 117
             L++    V++    I  P+RELA Q+    ++  +     + +              K
Sbjct: 61  EKLDENSNNVQVV---ITAPSRELATQIYQATKQIAEKSETEIRVANYVGGTDKLRQIEK 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L +      V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LKSSQPHIVIGTPGRIYDLVKSGDLEIYKAHTFVVDEADMTLDMGFLDTVDKIAGTLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEKIKTTTVIADTI---DNWLVSTKGRDKNAQIL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K+    L   L   G  V  IHG I  R R + ++  K+ + +
Sbjct: 235 EITKALNPYLAMIFVNTKERADELHSYLVSNGLKVAKIHGGIPPRERKRTMNQIKKLSYE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G +G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLNGIAITLYKPSDDSDI 354

Query: 358 DAIEKLIEKKVDWL--NGDLSS 377
             +EKL  K V  +  NG+   
Sbjct: 355 RELEKLGIKFVPKMLKNGEFQD 376


>gi|302692692|ref|XP_003036025.1| hypothetical protein SCHCODRAFT_256129 [Schizophyllum commune H4-8]
 gi|300109721|gb|EFJ01123.1| hypothetical protein SCHCODRAFT_256129 [Schizophyllum commune H4-8]
          Length = 760

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 128/439 (29%), Positives = 193/439 (43%), Gaps = 52/439 (11%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  +   ++  +   GY +P+PIQ + IP+ LQ  D+ GIA+TG+GKTA+FV+P+L 
Sbjct: 316 SWQESDIPSSILDVIETIGYKEPSPIQRQAIPIGLQNRDIIGIAETGSGKTAAFVIPLLA 375

Query: 62  ILE-----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +          R   P  LIL PTRELA Q+     K+      T   ++GG   E Q 
Sbjct: 376 FISAVAPLTDENRHLGPFALILAPTRELAQQIEVETRKFASGLGYTCVSIVGGRSVEEQQ 435

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT----- 171
             L  GA+++I TPGR+ D   R  L+++    +V+DEADRM+ +GF P +  I      
Sbjct: 436 FNLREGAEIIIATPGRLKDVLERHVLVLSQCRYVVMDEADRMVHLGFEPDLNFILDQLPA 495

Query: 172 ---------SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI----- 217
                     ++               ++       L    R  V T  S          
Sbjct: 496 ETMEGEESGDMMVVDDNRKHRHDDHAMDIDGEQRMKLVKKGRTRVTTLFSATMPPAVERL 555

Query: 218 ----------------------EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
                                     V       KK   L ++L S       I+F NQK
Sbjct: 556 ARKYLRRPAIITIGEAGRAVDTVEQRVEFVNGDEKKKHRLLEILNSGQYPSPIIVFVNQK 615

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
           K    +   L + G+S   +H   +Q  R   L++ + G   ++VA+DLA RG+D+ DV 
Sbjct: 616 KMADMVAKDLGRAGWSASTLHSGKNQEQREAALASLRSGEADILVATDLAGRGIDVQDVS 675

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDL 375
            V NF +    E Y+HRIGRTGRAG+ G A T +  ED + +  +++ I K        +
Sbjct: 676 LVVNFQMAGTIEAYVHRIGRTGRAGKLGTAITFLTNEDDEVMYDLKQEISK------SPV 729

Query: 376 SSLNPPLEKIDIAQHNHAR 394
           S +   L K + AQH   R
Sbjct: 730 SKVPVELAKHEAAQHKVTR 748


>gi|19115766|ref|NP_594854.1| translation initiation factor eIF4A [Schizosaccharomyces pombe
           972h-]
 gi|1708418|sp|P47943|IF4A_SCHPO RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|1321961|emb|CAA56772.1| translation initiation factor eIF-4A [Schizosaccharomyces pombe]
 gi|2222814|gb|AAB61679.1| cell cycle control protein eIF-4A [Schizosaccharomyces pombe]
 gi|6318257|emb|CAB60237.1| translation initiation factor eIF4A [Schizosaccharomyces pombe]
          Length = 392

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L P+++  +   G+ +P+ IQ + I  +L   DV   AQ+GTGKTA+F + +L 
Sbjct: 20  TFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQ 79

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++  + LIL PTRELA Q+       G   N+     IGG         L+ 
Sbjct: 80  KIDTS---LKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQA 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + +++ V+DEAD ML  GF   I +I  L+P T Q +
Sbjct: 137 GVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVV 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  +VA   +  K   L       
Sbjct: 197 LLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDL--YE 254

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L ++ F+V ++HG++DQ  R  ++  F+ G+ ++++ 
Sbjct: 255 TVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILIT 314

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G +   V  +D++ +  IE
Sbjct: 315 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIE 374

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 375 QFYNTHIEEMPMNIADL 391


>gi|326470514|gb|EGD94523.1| ATP-dependent RNA helicase HAS1 [Trichophyton tonsurans CBS 112818]
          Length = 568

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 117/400 (29%), Positives = 199/400 (49%), Gaps = 13/400 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL LS   V A+   G+   T IQ + IP  L   D+ G A+TG+GKT +F++P + 
Sbjct: 91  KFSDLSLSEPTVKAIAGMGFTTMTEIQQRGIPPSLAGRDLLGAAKTGSGKTLAFLIPAVE 150

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL   + + R      I+ PTRELA Q+     +  ++++ T  ++IGG    A+ +KL 
Sbjct: 151 ILRSLKFKPRNGTGALIITPTRELALQIFGVARELMEHHSQTYGVVIGGANRRAEAEKLN 210

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G +VLI TPGR +    +    +  N++ LVIDEADR+L++GF   ++ I S++P   +
Sbjct: 211 KGVNVLIGTPGRLLDHLRSTEGFVFKNLKTLVIDEADRILEVGFEDELRQIISILPKDDR 270

Query: 180 TLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             + FSAT T +++ ++   L+               T++          + K  LL   
Sbjct: 271 QTMLFSATQTTKVEDLARISLKPGPLYINVDHKKEHSTVDGVEQGFIICEAHKRFLLLFS 330

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +   +V      L      V ++HG + Q+ R      F       
Sbjct: 331 FLKKNAKKKIIVFFSSCNSVKYYSELLNYIDLPVLSLHGKLKQQKRTNTFFEFCNSAQGT 390

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V ++   D P+   +YIHR+GRT R  G+ G++   +   ++   
Sbjct: 391 LICTDVAARGLDIPAVDYIVQLDPPDDPRDYIHRVGRTARGKGKVGRSLMFLQPSEVGF- 449

Query: 358 DAIEKLIEKKVDWLNGDLS-----SLNPPLEKIDIAQHNH 392
             I  L E +V  +  +       ++   LEK+ I+Q+ +
Sbjct: 450 --INHLREARVPVVEFEFPTKHIINIQSQLEKL-ISQNYY 486


>gi|260769645|ref|ZP_05878578.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
 gi|260614983|gb|EEX40169.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
          Length = 442

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 122/419 (29%), Positives = 199/419 (47%), Gaps = 7/419 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLGL  +++  +    + + T IQ + IP+ +   D+   ++TG+GKT +F+LPML
Sbjct: 1   MQFKDLGLDNRLLKTLAHFDFKQATQIQQQAIPVAMAGKDLLASSKTGSGKTLAFLLPML 60

Query: 61  TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +      R PR +IL PTRELA QV           + T  L+ GG  F  Q K L
Sbjct: 61  HKALKTKALSARDPRGVILVPTRELAKQVYGELRTMLSGLSYTATLITGGENFNDQVKAL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG   ++ TPGR+ DH     L +  +E L++DEADRMLD+GF P +++I +     R+
Sbjct: 121 RRGPKFIVATPGRLADHLEHRSLFLEGLETLILDEADRMLDLGFAPQLRHIHNAAKHRRR 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L  +   D  Q     +        +    S  +  +         +      L   +
Sbjct: 181 QTLLFSATLDHAQVNDIAYEMLNDAKHIAVGGSNEQHKDITQRFYLCDHLDHKEALLDRV 240

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  IIF   + +   L   L ++     A+ G+++Q  R  I+S F+    +++
Sbjct: 241 LDDADYRQVIIFTATRDDTERLTAKLNERKLKAVALSGSLNQIQRNTIMSQFERAVFKIL 300

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +D+A+RGLDI +V HV NFD+P   E Y+HR+GRTGRAG  G A +LV  +D      
Sbjct: 301 VTTDVASRGLDIANVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKR 360

Query: 360 IEKLIEKKVDW-----LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           +E  +++ + +     L G    L    + ++ A+    +      + +    +R K +
Sbjct: 361 VEAYLKQDIQFDVLEGLQGKFKGL-KVRQPVNKAKPQRGQAKPQAKKVAKKPVKRDKGF 418


>gi|195011457|ref|XP_001983158.1| GH15746 [Drosophila grimshawi]
 gi|193896640|gb|EDV95506.1| GH15746 [Drosophila grimshawi]
          Length = 786

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 117/428 (27%), Positives = 214/428 (50%), Gaps = 3/428 (0%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +GL  +++  +   GY  PTPIQ KTIPL+L+  DV  +A+TG+GKTA F++P+   L++
Sbjct: 1   MGLGFELLKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQR 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
                   R LIL PTRELA Q     ++ G+   L   L++GG   ++Q   +    DV
Sbjct: 61  REPTKGA-RALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHTCPDV 119

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           ++ TPGR L       L + +IE +V DEADR+ +MGF   +    + +P +RQ ++FSA
Sbjct: 120 IVATPGRFLHLCVEMDLKLTSIEYVVFDEADRLFEMGFGEQLNETLNRLPASRQMVMFSA 179

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           T+   L + +   L +P  I ++  S   + +            +  AL+  L       
Sbjct: 180 TLPKLLVEFARAGLSDPVLIRLDVESKLPDAL-ALKFVYCRPEDRFTALVVLLKYVIPQQ 238

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              ++F   + +V  + + L + G S  +++ ++D  +R    + F    + ++V +D+A
Sbjct: 239 AQTVVFVGTQHHVELISYILSQSGISNTSVYSSLDAAARKINTAKFASKKVSVLVVTDVA 298

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARG+DIP + +V N   P   + ++HR+GR  RAGR G A+++ + +D  H+  +   + 
Sbjct: 299 ARGIDIPSLDYVVNLHFPGIPKLFVHRVGRCARAGRTGTAYSIFSTDDTAHLLDLHLFLN 358

Query: 366 KKVDWLN-GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKE 424
           +  +  +   + ++   L + +       +K++ I       +   K Y S +       
Sbjct: 359 RPFNINDSSSIGTIPQDLLEDEYLTVTEIKKSHHIAGVLRTSENAYKKYLSSRPTASTDA 418

Query: 425 SEKISKLQ 432
           + +  K++
Sbjct: 419 NSRAKKIK 426


>gi|114640235|ref|XP_001141618.1| PREDICTED: probable ATP-dependent RNA helicase DDX10 [Pan
           troglodytes]
          Length = 875

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 125/446 (28%), Positives = 209/446 (46%), Gaps = 15/446 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P +  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +             LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +++  
Sbjct: 131 LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINN 190

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +            ++++LV+DEADR+LDMGF   +  +   +P  RQTL
Sbjct: 191 INILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTL 250

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L+NP+ + V+   +   T             K+   +      
Sbjct: 251 LFSATQTKSVKDLARLSLKNPEYVWVHE-KAKYSTPATLEQNYIVCELKQKISVLYSFLR 309

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA--IHGNIDQRSRMKILSNFKEGTIQLM 299
               K  I+F +  K V  L     +    V    +HG   Q  RM++ + F      ++
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVL 369

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   +   +  
Sbjct: 370 FATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAMV-- 427

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
            ++L++KKV      ++    P + ID+      +  + + Q     +R ++ + S    
Sbjct: 428 -QQLLQKKVPVKEIKIN----PEKLIDV----QKKLESILAQDQDLKERAQRCFVSYVRS 478

Query: 420 IPLKESEKISKLQQDIQENDADSLGF 445
           + L + +++  + +      A SLG 
Sbjct: 479 VYLMKDKEVFDVSKLPIPEYALSLGL 504


>gi|170034912|ref|XP_001845316.1| DEAD-box helicase Dbp80 [Culex quinquefasciatus]
 gi|167876609|gb|EDS39992.1| DEAD-box helicase Dbp80 [Culex quinquefasciatus]
          Length = 530

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 101/393 (25%), Positives = 171/393 (43%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  L L P+++  V   G+  P+ IQ   +P +L     ++   +Q+GTGKTA+FVL M
Sbjct: 144 TFEALHLKPELLQGVYAMGFNAPSKIQETALPTLLAEPPQNMIAQSQSGTGKTAAFVLAM 203

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +         P+ + L PT ELA Q  +   K  K                ++  KL
Sbjct: 204 LSRVNPA---KNYPQVICLSPTYELAIQTGEVAAKMAKFCPEIKLRYAVRGEEISKGSKL 260

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             R   L      ++ +    +   G       I   +  + Q
Sbjct: 261 TDHIIIGTPGKLLDWGIKFRAFDLKKISVFVLDEADVMIATQGHQDQCIRIHKQLSSSCQ 320

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSAT   E+ + +E  + NP  I +     + + I+  +V    Q  K        +
Sbjct: 321 MMFFSATYEREVMEFAEYIVPNPIVIRLAREQESLDNIKQYYVKCRNQDEKY--QAISNI 378

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   IIFC+ +K    L   + + G SV  + G++    R+ +L  F+ G  +++
Sbjct: 379 YGVITVGQAIIFCHTRKTAGWLSGKMSQDGHSVAVLSGDLTVEQRLMVLDRFRAGMEKVL 438

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNR------AENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           + +++ +RG+D+  V  V NFD+P         E Y+HRIGRTGR G++G A  LV +  
Sbjct: 439 ITTNVLSRGIDVEQVTIVVNFDLPTDQQGRADCETYLHRIGRTGRFGKNGIAINLVDSDR 498

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
            +    AIE   +K++  L+ + S     +EKI
Sbjct: 499 SMAICRAIESHFKKRIHLLDAENSD---EIEKI 528


>gi|158514833|sp|A3LSN3|DRS1_PICST RecName: Full=ATP-dependent RNA helicase DRS1
          Length = 741

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 120/475 (25%), Positives = 218/475 (45%), Gaps = 36/475 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L LS  V+  +   GY KP+PIQ  +IP+ L   D+   A TG+GKTA++++P++ 
Sbjct: 223 TFQTLQLSRPVLKGLSQLGYTKPSPIQSASIPIALLGRDIVAGAVTGSGKTAAYMIPIIE 282

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK---NYNLTVALLIGGIPFEAQNKK 118
            L    ++V   R ++L PTRELA QV D  +K G+   N N  +A+    +  + Q  K
Sbjct: 283 RLLYKPSKVASTRVIVLTPTRELAIQVGDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLK 342

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 +            +    + +   +++ +    + +   +   + ++ +    R
Sbjct: 343 SRPDVVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQVELTEILSLIPKNKR 402

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS--TAETIEHCFVATYAQYSKKCALLQ 236
           QTLLFSATM  ++Q + +  LQ P RI ++ P +  T  T E   +              
Sbjct: 403 QTLLFSATMNTKIQDLIQLSLQRPVRIMIDPPKTAATKLTQEFVRIRKRDHLKPALLFQL 462

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                       ++F ++K++   L   L   G  V  +HG++ Q  R+  +++FK+  +
Sbjct: 463 LKKLDPAQQSRIVVFVSRKESAHKLRIVLGLLGMKVSELHGSLTQEQRLNNVNDFKKLIV 522

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK--EDI 354
            +++ +DLAARGLDIP +  V N+D+P   E Y+HR+GRT RAGR G + + V +   D 
Sbjct: 523 PVLICTDLAARGLDIPKIEIVINYDMPKSHEVYLHRVGRTARAGRDGTSISFVGESTSDR 582

Query: 355 KHIDAIEKLIE----------KKVDWLNGDLSSLNPPLE-----------------KIDI 387
             +    K +E          + +DW+  D+  LN  +E                 +I  
Sbjct: 583 NIVKDAIKSLEGGEVKGKAVSRNIDWV--DVEQLNKIVESKQEIIEEVLDEEKQAKEILQ 640

Query: 388 AQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADS 442
           A+   A+ +N +  +     R K+ +   +      ++E + +L +  ++ ++  
Sbjct: 641 AEMQLAKASNMMKHEKEIQSRPKRTWFESEKDKKKHQTEVMQQLTKHGKKVNSKK 695


>gi|150864695|ref|XP_001383630.2| nucleolar DEAD-box protein required for synthesis of 60S ribosomal
           subunits [Scheffersomyces stipitis CBS 6054]
 gi|149385951|gb|ABN65601.2| nucleolar DEAD-box protein required for synthesis of 60S ribosomal
           subunits [Scheffersomyces stipitis CBS 6054]
          Length = 672

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 120/475 (25%), Positives = 218/475 (45%), Gaps = 36/475 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L LS  V+  +   GY KP+PIQ  +IP+ L   D+   A TG+GKTA++++P++ 
Sbjct: 160 TFQTLQLSRPVLKGLSQLGYTKPSPIQSASIPIALLGRDIVAGAVTGSGKTAAYMIPIIE 219

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK---NYNLTVALLIGGIPFEAQNKK 118
            L    ++V   R ++L PTRELA QV D  +K G+   N N  +A+    +  + Q  K
Sbjct: 220 RLLYKPSKVASTRVIVLTPTRELAIQVGDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLK 279

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 +            +    + +   +++ +    + +   +   + ++ +    R
Sbjct: 280 SRPDVVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQVELTEILSLIPKNKR 339

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS--TAETIEHCFVATYAQYSKKCALLQ 236
           QTLLFSATM  ++Q + +  LQ P RI ++ P +  T  T E   +              
Sbjct: 340 QTLLFSATMNTKIQDLIQLSLQRPVRIMIDPPKTAATKLTQEFVRIRKRDHLKPALLFQL 399

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                       ++F ++K++   L   L   G  V  +HG++ Q  R+  +++FK+  +
Sbjct: 400 LKKLDPAQQSRIVVFVSRKESAHKLRIVLGLLGMKVSELHGSLTQEQRLNNVNDFKKLIV 459

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK--EDI 354
            +++ +DLAARGLDIP +  V N+D+P   E Y+HR+GRT RAGR G + + V +   D 
Sbjct: 460 PVLICTDLAARGLDIPKIEIVINYDMPKSHEVYLHRVGRTARAGRDGTSISFVGESTSDR 519

Query: 355 KHIDAIEKLIE----------KKVDWLNGDLSSLNPPLE-----------------KIDI 387
             +    K +E          + +DW+  D+  LN  +E                 +I  
Sbjct: 520 NIVKDAIKSLEGGEVKGKAVSRNIDWV--DVEQLNKIVESKQEIIEEVLDEEKQAKEILQ 577

Query: 388 AQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADS 442
           A+   A+ +N +  +     R K+ +   +      ++E + +L +  ++ ++  
Sbjct: 578 AEMQLAKASNMMKHEKEIQSRPKRTWFESEKDKKKHQTEVMQQLTKHGKKVNSKK 632


>gi|50307015|ref|XP_453485.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74606431|sp|Q6CRF4|DBP4_KLULA RecName: Full=ATP-dependent RNA helicase DBP4
 gi|49642619|emb|CAH00581.1| KLLA0D09504p [Kluyveromyces lactis]
          Length = 770

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 122/457 (26%), Positives = 206/457 (45%), Gaps = 28/457 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F DL +S + +  + +A ++K T IQ ++IPL L+ HDV G A+TG+GKT +F++P +  
Sbjct: 43  FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  +    +     LI+ PTRELA Q+ +   K GK+   +  L+IGG     + +++ R
Sbjct: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR 162

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +           +N+++LV+DEADR LDMGF   +  I + +P +RQTL
Sbjct: 163 INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTL 222

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT +  L  ++   L + K++      +   +         +           +L S
Sbjct: 223 LFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFS 282

Query: 242 QDTMK---NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL--SNFKEGTI 296
                     I+F +  K V  +  +  K    +  +H +  Q+   +      F     
Sbjct: 283 FIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQH 342

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             + ++D+ ARG+D P V  V   D P   + YIHR+GR  R G+ GK+  ++  E+   
Sbjct: 343 VCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEE--- 399

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
               E+   K++   N + S LN              +K+     +S  F   +  Y  Q
Sbjct: 400 ----EEGFLKRLKTKNIEPSRLN---------IKQSKKKSIKPQLQSLLFKDPELKYLGQ 446

Query: 417 KSHIPLKESEKISKLQQDIQ------ENDADSLGFRG 447
           K+ I    S  I K ++         E  A+SLG  G
Sbjct: 447 KAFISYVRSIYIQKDKEVFHFDKIPLEQFANSLGLPG 483


>gi|323346496|gb|EGA80783.1| Dbp5p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 458

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 104/399 (26%), Positives = 189/399 (47%), Gaps = 25/399 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +LGL+P+++  +    + KP+ IQ + +PL+L     ++   +Q+GTGKTA+F L M
Sbjct: 75  SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 134

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           LT +         P+ + L P+RELA Q  +  ++ GK   +T  L++   P   +  K 
Sbjct: 135 LTRV---NPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIV---PDSFEKNKQ 188

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++      +     +   L      ++ +  + +   G       +   +P   Q
Sbjct: 189 INSQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQ 248

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT  D +++ ++  + N   +E+ T     + I+  ++    +  K   L +   
Sbjct: 249 LVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTEL-- 306

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+ + IIF   KK    L   L+ +G  V  +HG++  + R +++ +F+EG  +++
Sbjct: 307 YGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVL 366

Query: 300 VASDLAARGLDIPDVGHVFNFDVPN------RAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           + +++ ARG+DIP V  V N+D+P           YIHRIGRTGR GR G A + V  ++
Sbjct: 367 ITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 426

Query: 354 IKH-IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
             + + AI+K          GD+     P +  D  + N
Sbjct: 427 SFNILSAIQKYF--------GDIEMTRVPTDDWDEVRKN 457


>gi|194212659|ref|XP_001499618.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
           [Equus caballus]
          Length = 874

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 128/446 (28%), Positives = 211/446 (47%), Gaps = 14/446 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P +  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +             LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +++  
Sbjct: 131 LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINN 190

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +            N+++LV+DEADR+LDMGF   +  I   +P  RQTL
Sbjct: 191 INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTL 250

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L+NP+ + V+   +   T             ++   +      
Sbjct: 251 LFSATQTKSVKDLARLSLKNPEYVWVHE-KAKYSTPATLEQNYIVCELQQKISVLYSFLR 309

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA--IHGNIDQRSRMKILSNFKEGTIQLM 299
               K  I+F +  K V  L     +    V    +HG   Q  RM++ + F      ++
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVL 369

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   + K +  
Sbjct: 370 FATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEKGM-- 427

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +++L++KKV      ++    P + ID+      +  + + Q     +R ++ + S    
Sbjct: 428 VQQLLQKKVPVKEIKIN----PEKLIDV----QKKLESFLAQDQDLKERAQRCFVSYIRS 479

Query: 420 IPLKESEKISKLQQDIQENDADSLGF 445
           + L + ++I  + +      A SLG 
Sbjct: 480 VYLMKDKEIFDVSKLPIPEYALSLGL 505


>gi|71019993|ref|XP_760227.1| hypothetical protein UM04080.1 [Ustilago maydis 521]
 gi|74701057|sp|Q4P733|DED1_USTMA RecName: Full=ATP-dependent RNA helicase DED1
 gi|46099796|gb|EAK85029.1| hypothetical protein UM04080.1 [Ustilago maydis 521]
          Length = 672

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 131/396 (33%), Positives = 203/396 (51%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F    +   ++  +  A Y  PTP+Q  +IP++    D+ G AQTG+GKT  F+ P+  
Sbjct: 190 TFTSPPIDAHLLENIKLARYTNPTPVQKYSIPIIKLGRDLMGCAQTGSGKTGGFLFPILS 249

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                                 R   P TLIL PTREL +Q+ D   K+     +  A++
Sbjct: 250 ALFTHGPPPPSAAEMAQGGYNRRKAYPSTLILAPTRELVSQIHDEARKFTYRSWVKPAVV 309

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q +++ERG D+L  TPGR++D   RG++ ++N+  LV+DEADRMLDMGF P 
Sbjct: 310 YGGADIVTQLRQIERGCDLLSATPGRLVDLMERGRISLSNVRFLVLDEADRMLDMGFEPQ 369

Query: 167 IQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++++FL+    + V    ST+E I     
Sbjct: 370 IRRIVEGEDMPGVMDRQTLMFSATFPRDIQLLAKDFLKEYVFLSVGRVGSTSENITQKIE 429

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +       +L S  +    +IF   K+    L   L +      +IHG+  QR
Sbjct: 430 YVEDDDKRSVL--LDVLASMPSGGLTLIFVETKRMADMLSDFLLRSKIGATSIHGDRTQR 487

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   +MVA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  
Sbjct: 488 ERERALELFRSGKTPIMVATAVAARGLDIPNVTHVVNYDLPSDVDDYVHRIGRTGRAGNV 547

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A     + +   +  + +L+++    +   L ++
Sbjct: 548 GHATAFFNRGNKNIVRDLIELLKEANQEVPQWLEAV 583


>gi|327306545|ref|XP_003237964.1| DEAD box ATP-dependent RNA helicase [Trichophyton rubrum CBS
           118892]
 gi|326460962|gb|EGD86415.1| DEAD box ATP-dependent RNA helicase [Trichophyton rubrum CBS
           118892]
          Length = 565

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 117/400 (29%), Positives = 199/400 (49%), Gaps = 13/400 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL LS   V A+   G+   T IQ + IP  L   D+ G A+TG+GKT +F++P + 
Sbjct: 88  KFSDLSLSEPTVKAISGMGFTTMTEIQQRGIPPSLAGRDILGAAKTGSGKTLAFLIPAVE 147

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL   + + R      I+ PTRELA Q+     +  ++++ T  ++IGG    A+ +KL 
Sbjct: 148 ILRSLKFKPRNGTGALIITPTRELALQIFGVARELMEHHSQTYGVVIGGANRRAEAEKLN 207

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G +VLI TPGR +    +    +  N++ LVIDEADR+L++GF   ++ I S++P   +
Sbjct: 208 KGVNVLIGTPGRLLDHLRSTEGFVFKNLKTLVIDEADRILEVGFEDELRQIISILPKEDR 267

Query: 180 TLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             + FSAT T +++ ++   L+               T++          + K  LL   
Sbjct: 268 QTMLFSATQTTKVEDLARISLKPGPLYINVDHKKEHSTVDGVEQGFIICEAHKRFLLLFS 327

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +   +V      L      V ++HG + Q+ R      F       
Sbjct: 328 FLKKNAKKKIIVFFSSCNSVKYYSELLNYIDLPVLSLHGKLKQQKRTNTFFEFCNSAQGT 387

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V ++   D P+   +YIHR+GRT R  G+ G++   +   ++   
Sbjct: 388 LICTDVAARGLDIPAVDYIVQLDPPDDPRDYIHRVGRTARGKGKVGRSLMFLQPSEVGF- 446

Query: 358 DAIEKLIEKKVDWLNGDLS-----SLNPPLEKIDIAQHNH 392
             I  L E +V  +  +       ++   LEK+ I+Q+ +
Sbjct: 447 --INHLREARVPVVEFEFPTKHIINIQSQLEKL-ISQNYY 483


>gi|237841945|ref|XP_002370270.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211967934|gb|EEB03130.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|221482742|gb|EEE21080.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
 gi|221503065|gb|EEE28771.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 698

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 120/441 (27%), Positives = 195/441 (44%), Gaps = 16/441 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LG+ P ++          P+PIQ+ ++P  L+  +VCG+A TG+GKT  +  P+L 
Sbjct: 257 TFASLGVPPALIRTAASLHIFHPSPIQVLSLPHTLRGKNVCGLAPTGSGKTLGYCWPLLQ 316

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + +G     M    +L P RELA QV D F  YG    + V LL+GG     + K L++
Sbjct: 317 RIGRGDGHAFMGL--VLLPARELAIQVLDQFRIYGVQLGVRVCLLLGGRDLVEEGKLLDQ 374

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+ DH     L M     LV        D       ++    +     T 
Sbjct: 375 CPHIVIATPGRMSDHVQNDPLRMKKRLSLVDVLVLDEADRLLSDEFEDDLKTILSCVPTS 434

Query: 182 L-------FSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                   FSAT++  L  +   F  +         T       + H ++    +     
Sbjct: 435 SQGRQTLLFSATVSPALLALQRRFGDDAMPLVDAHPTDQPALPNLSHFYMFVPTRMQPIY 494

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L      S      GI+F    +    +C +LE    S   +H  ++QR R+  L  F+
Sbjct: 495 LLYLLEHTSPFCSDRGIVFAGSVRQTQQICTALEILKQSATPLHSLMEQRKRVACLEKFR 554

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
             T +L++ +D+A RGLD+P V  V N  VP +A++Y+HR GRT RAGR G A T V  +
Sbjct: 555 SETSRLLICTDVAGRGLDLPRVEFVINMQVPGKAQDYVHRTGRTARAGRKGVALTFVDPK 614

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            ++ +  IE LI  ++  L     S+N       ++ ++   + + +     GFD + + 
Sbjct: 615 SVRAVHRIEALINTQLQPLP----SINEQDVLKFLSNYSKVVQKSLLFLNEIGFDEKAEQ 670

Query: 413 YSSQ-KSHIPLKESEKISKLQ 432
           +    K+    +   +  K +
Sbjct: 671 HEEYTKAFKEARRKRRAQKAE 691


>gi|187731861|ref|YP_001880183.1| ATP-dependent RNA helicase DbpA [Shigella boydii CDC 3083-94]
 gi|187428853|gb|ACD08127.1| ATP-independent RNA helicase DbpA [Shigella boydii CDC 3083-94]
          Length = 457

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 133/383 (34%), Positives = 208/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q  T+P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAATLPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAV----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W     +S   PLE
Sbjct: 357 SDMLQIKLNWQTPPANSSIVPLE 379


>gi|168486746|ref|ZP_02711254.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC1087-00]
 gi|183570245|gb|EDT90773.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC1087-00]
          Length = 447

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 201/452 (44%), Gaps = 43/452 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +   +  +
Sbjct: 61  QQLDEASDSVQAV---ITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGCLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T             
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 237 --TQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL-------------------------IEKKVDWLNGDLSSL---------NPPLE 383
             +EKL                          EKK D L+ ++  L             +
Sbjct: 355 RELEKLGIKFSPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKKKKVKPGYKK 414

Query: 384 KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           KI  A     RK      ++ G   RK    +
Sbjct: 415 KIQWAVDEKRRKTKRAENRARGRAERKAKRQT 446


>gi|95007096|emb|CAJ20316.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii RH]
          Length = 574

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 120/441 (27%), Positives = 195/441 (44%), Gaps = 16/441 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LG+ P ++          P+PIQ+ ++P  L+  +VCG+A TG+GKT  +  P+L 
Sbjct: 133 TFASLGVPPALIRTAASLHIFHPSPIQVLSLPHTLRGKNVCGLAPTGSGKTLGYCWPLLQ 192

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + +G     M    +L P RELA QV D F  YG    + V LL+GG     + K L++
Sbjct: 193 RIGRGDGHAFMGL--VLLPARELAIQVLDQFRIYGVQLGVRVCLLLGGRDLVEEGKLLDQ 250

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+ DH     L M     LV        D       ++    +     T 
Sbjct: 251 CPHIVIATPGRMSDHVQNDPLRMKKRLSLVDVLVLDEADRLLSDEFEDDLKTILSCVPTS 310

Query: 182 L-------FSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                   FSAT++  L  +   F  +         T       + H ++    +     
Sbjct: 311 SQGRQTLLFSATVSPALLALQRRFGDDAMPLVDAHPTDQPALPNLSHFYMFVPTRMQPIY 370

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L      S      GI+F    +    +C +LE    S   +H  ++QR R+  L  F+
Sbjct: 371 LLYLLEHTSPFCSDRGIVFAGSVRQTQQICTALEILKQSATPLHSLMEQRKRVACLEKFR 430

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
             T +L++ +D+A RGLD+P V  V N  VP +A++Y+HR GRT RAGR G A T V  +
Sbjct: 431 SETSRLLICTDVAGRGLDLPRVEFVINMQVPGKAQDYVHRTGRTARAGRKGVALTFVDPK 490

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            ++ +  IE LI  ++  L     S+N       ++ ++   + + +     GFD + + 
Sbjct: 491 SVRAVHRIEALINTQLQPLP----SINEQDVLKFLSNYSKVVQKSLLFLNEIGFDEKAEQ 546

Query: 413 YSSQ-KSHIPLKESEKISKLQ 432
           +    K+    +   +  K +
Sbjct: 547 HEEYTKAFKEARRKRRAQKAE 567


>gi|111024195|ref|YP_707167.1| ATP-dependent RNA helicase [Rhodococcus jostii RHA1]
 gi|110823725|gb|ABG99009.1| ATP-dependent RNA helicase [Rhodococcus jostii RHA1]
          Length = 465

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 136/415 (32%), Positives = 213/415 (51%), Gaps = 7/415 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL   +  A+  +G   P PIQ  TIP VL   DV G A TG+GKT +F LPML 
Sbjct: 15  TFLALGLPAVMTHALDRSGIGAPFPIQAATIPDVLAGRDVLGRAPTGSGKTLAFGLPMLV 74

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+   +R   PR ++L PTRELA Q+    ++   +  L VA ++GGIP + Q + L R
Sbjct: 75  RLKGAASRRGFPRGIVLVPTRELALQIERALDEPALSVGLRVANVVGGIPIKRQVEILSR 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+LI TPGR+ DH  +G + ++++ +L +DEAD M D+GF+P +  I    P   Q L
Sbjct: 135 GVDLLIATPGRLADHVAQGSVSLDDVTVLALDEADHMADLGFMPQVTTILDKTPADGQRL 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  E+  +   +L++P        +++  T+ H  +       K           
Sbjct: 195 LFSATLDGEVDTLVRRYLRDPVTHSTAPVTASVSTMRHHLLFVDRVDKKSVVAHI----- 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   ++F   K  V  L   L + G S  A+HG   Q +R + L +F EGT  ++VA
Sbjct: 250 GSRVGRTLMFVRTKYGVDRLAQQLHEAGISAGALHGGKAQNNRTRTLESFAEGTTPVLVA 309

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ + D+  V + D P   ++Y+HR GRT RAG  G   TLV +++   ++ + 
Sbjct: 310 TDVAARGIHVDDISLVVHVDPPADPKDYLHRAGRTARAGESGVVVTLVTEDERAEVEKLT 369

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +    +VD +   +   +  L +I  A+    +       ++   D  KK   + 
Sbjct: 370 RKAGIEVDGVR--VRPGDTVLAEITGARRPTGKPVPAPDTRAPAQDTPKKGRQAH 422


>gi|296111805|ref|YP_003622187.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154]
 gi|295833337|gb|ADG41218.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154]
          Length = 455

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 219/452 (48%), Gaps = 16/452 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    LSP+++ A+   G+ KPTP+Q K IP +L+ +DV G +QTG+GKT +F++P+  
Sbjct: 7   QFGQFNLSPEIITALTAIGFTKPTPVQAKLIPSILKGNDVVGQSQTGSGKTHTFLIPIFN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            LE+ +A  +   T           + A +F +      +    + G        +  + 
Sbjct: 67  QLEQNKAYAQAVITTPSRELAAQITKAAKDFSEQWHQDAIISEFVGGTDKLRQIKQLEKG 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRI D    G L ++ ++  V+DEAD  LDMGF+  +  I  ++P   QTL
Sbjct: 127 QPQIVIGTPGRIKDLVASGALKLHAVKTFVVDEADMTLDMGFLNEVDFIAGVMPANLQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM ++L+   + +L NP+   +   +  A+TI        A  SK    +   + +
Sbjct: 187 VFSATMPEKLKPFLKKYLDNPQFEAIPVSTVIADTI---DNWLLATKSKDKNDVIYQVLT 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F N K     +  +L  +G  V  IHG+I+ R R +++   +    Q +VA
Sbjct: 244 IGNPYLALVFANTKDRAKEIVSNLRGRGLKVAEIHGDIEPRERRRVMKAIQNLEYQYVVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+DI  V HV N D+P   E ++HR+GRTGR G  G A TL   ++   ++ +E
Sbjct: 304 TDLAARGIDITGVSHVINDDIPEELEFFVHRVGRTGRNGLPGLAITLYGPDEENEVEELE 363

Query: 362 KL-IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP---------IPQKSTGFDRRKK 411
            L I  K   +  D   ++    +    +    RK +P               G+ RR K
Sbjct: 364 ALGINFKAKQIK-DNEIVDIKDRRARKQRVATTRKLDPTMVGMVKKKKKIVKPGYKRRIK 422

Query: 412 NYSSQKSHIPLK--ESEKISKLQQDIQENDAD 441
               +K  +  +  + E +  ++++ ++   +
Sbjct: 423 KALQRKDQMDRRISKREDMRAIRKENKKRGDN 454


>gi|91787583|ref|YP_548535.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
 gi|91696808|gb|ABE43637.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
          Length = 624

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 128/430 (29%), Positives = 212/430 (49%), Gaps = 55/430 (12%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR------------HDVCGIAQTGTG 50
           F  LGL+ +++ AV D G+ +PT +Q+ TIP  +Q              D+   +QTG+G
Sbjct: 49  FVKLGLAKELLQAVADMGFTQPTAVQLATIPKAMQGLDADGADPKAKFTDLLVSSQTGSG 108

Query: 51  KTASFVLPMLTILEKG---------------------------------------RARVR 71
           KTA+F+LP+L  L                                            +  
Sbjct: 109 KTAAFLLPVLHTLLMQQEEAERQERAEFERLSAEAIAKGEAPPKKPKRKDPTNARNFKAA 168

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
            P  LIL PTRELA QV  +     ++        + G           + A++++ TPG
Sbjct: 169 TPGALILCPTRELAQQVCADAIDLVRHCRGLRIANVVGGIPYQLQIAKLQNANLVVATPG 228

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+LD     ++ ++ ++ LV+DEADRMLD+GF   +  +  L    +QT++FSAT    +
Sbjct: 229 RLLDLQRSMQIKLDQVQFLVVDEADRMLDLGFADDLTEVNQLTIERKQTMMFSATFAPRI 288

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
            +++   ++ P+R+E+++P     +I    +       K+            TM   I+F
Sbjct: 289 MQLATRVMRTPQRVEIDSPHEKHTSITQSLLWADNMTHKRKL--LDHHLRDTTMNQSIVF 346

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
              +     L + L ++GFS  A+HG + Q  R + L  F++G +Q++VA+D+AARGLD+
Sbjct: 347 ACTQVECDGLANDLVQEGFSAVALHGALGQGLRNRRLMAFRDGRVQVLVATDVAARGLDV 406

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
           P + HV N+ +P +AE+Y+HRIGRTGRAGR G+A T+    D + I  IE  +++ +   
Sbjct: 407 PTITHVINYGLPMKAEDYVHRIGRTGRAGREGQAITIAEFRDRRKIQDIEHYMQQNLK-- 464

Query: 372 NGDLSSLNPP 381
              ++ L P 
Sbjct: 465 PSVIAGLEPQ 474


>gi|306830625|ref|ZP_07463790.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304427133|gb|EFM30240.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 447

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 118/382 (30%), Positives = 182/382 (47%), Gaps = 11/382 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D    P +  A+ +  +  PT +Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFNDFNFKPYIREALAELKFTNPTEVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNK 117
             L++    V++    I  P+RELA Q+    ++  +     + +              K
Sbjct: 61  EKLDENSNNVQVV---ITAPSRELATQIYQATKQIAEKSETEIRVANYVGGTDKLRQIEK 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L +      V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LKSSQPHIVIGTPGRIYDLVKSGDLEIYKAHTFVVDEADMTLDMGFLDTVDKIAGTLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEKIKTTTVIADTI---DNWLVSTKGRDKNAQIL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K+    L   L   G  V  IHG+I  R R + ++  K+ + +
Sbjct: 235 EITKALNPYLAMIFVNTKERADELHSYLVSNGLKVAKIHGDIPPRERKRTMNQIKKLSYE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G +G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLNGIAITLYKPSDDSDI 354

Query: 358 DAIEKLIEKKVDWL--NGDLSS 377
             +EK+  K V  +  NG+   
Sbjct: 355 RELEKMGIKFVPKMLKNGEFQD 376


>gi|78776342|ref|YP_392657.1| ATP-dependent RNA helicase DbpA [Sulfurimonas denitrificans DSM
           1251]
 gi|78496882|gb|ABB43422.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 457

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 130/359 (36%), Positives = 199/359 (55%), Gaps = 8/359 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++L L+ +++  + + GY K + IQ +++P +L   DV   A+TG+GKTA+F + +L 
Sbjct: 6   EFSNLNLTKEMLHNLNEIGYTKMSDIQEQSLPFILDGKDVIAQAKTGSGKTAAFGIGLLH 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+  + RV+    LIL PTREL+ QVA       +  +    L +  G+ F  Q   L 
Sbjct: 66  KLQVKKFRVQ---ALILCPTRELSDQVARELRVLARFSHNIKILTLCGGVAFGPQLGSLR 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRIL H  +  L + +++ LV+DEADRMLDMGF   I  +   VP  RQT
Sbjct: 123 HGAHIIVGTPGRILKHLKKDTLSLEDVDTLVLDEADRMLDMGFSEEINEVLEFVPKNRQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT TDE+  +S++       ++  +     +  E  +    A   K    +     
Sbjct: 183 LLFSATYTDEILDISKSIQNGAIHVKTTSTEIANKIEERFYEVNNADKIKTVIDIL---- 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S    +N IIF N K  V  +   L++      AIHG+++Q  R  +L  F   +  ++V
Sbjct: 239 SNFRPQNVIIFANTKVEVDEIAKRLQESKVDALAIHGDLEQYDRNDVLVQFANKSCPVLV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           A+D+AARGLDI ++  V N+D+P+  E Y HRIGRT RAG  G AFTL +  + + +D 
Sbjct: 299 ATDVAARGLDIKELSMVINYDLPHSLETYTHRIGRTARAGAEGLAFTLYSAYEEEKVDE 357


>gi|321464010|gb|EFX75021.1| hypothetical protein DAPPUDRAFT_306922 [Daphnia pulex]
          Length = 825

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 127/372 (34%), Positives = 200/372 (53%), Gaps = 3/372 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   V+  GY  PTPIQ K IPL++++ DV  +A+TG+GKTA F++P+   
Sbjct: 37  FQSMGLSYNVYHGVMKCGYKIPTPIQRKCIPLIMEKKDVVAMARTGSGKTACFLIPLFER 96

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+         R LI+ PTRELA Q      + GK   L  A ++GG   EAQ   +   
Sbjct: 97  LQ--AHSTIGTRALIMSPTRELALQTLKFTRELGKFTGLKAATILGGDSMEAQFAAMHEI 154

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR        +L +  IE +V DEADR+ +MGF   +  I + +P  RQTLL
Sbjct: 155 PDIIIATPGRFAHLCVEMELKLKEIEYVVFDEADRLFEMGFGEQLLEILNRLPELRQTLL 214

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L   ++  L +P  + ++  S   E +           SK   LL  L  + 
Sbjct: 215 FSATLPKLLVDFTKAGLTDPVLVRLDVDSKLPEAL-KLGFVFCPCESKASVLLHLLRNAV 273

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
            + +  ++F     +V  L   L+K G S   I+ ++DQ +R    + F+     +M+ +
Sbjct: 274 KSGELTLVFAATMHHVEYLHLLLDKAGISNTYIYSSLDQAARKIHAAKFQTKQTHVMITT 333

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP + +V N++ P +A+ ++HR+GR  RAGR G A++LVA +++  +  +  
Sbjct: 334 DVAARGIDIPLLDNVINYNFPAKAKLFVHRVGRVARAGRSGCAYSLVALDELPALVDLHL 393

Query: 363 LIEKKVDWLNGD 374
            + + V  +  D
Sbjct: 394 FLGRPVKQIPQD 405


>gi|225680888|gb|EEH19172.1| ATP-dependent RNA helicase ded1 [Paracoccidioides brasiliensis
           Pb03]
          Length = 686

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 129/393 (32%), Positives = 202/393 (51%), Gaps = 19/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F +  L   ++  ++ + Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+   
Sbjct: 200 FTNPPLHEHLLSNIILSRYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSK 259

Query: 60  ---------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                          GR     P  LIL PTREL +Q+ D   K+     L   ++ GG 
Sbjct: 260 SLEKRGPDGDVPRGLGRQSKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVYGGA 319

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L++G +VL+ TPGR++D   RG++ +++I+ LV+DEADRMLDMGF P I+ I
Sbjct: 320 EMGNQLRQLDQGCNVLVATPGRLVDMMERGRISLSHIQYLVLDEADRMLDMGFEPQIRRI 379

Query: 171 TSLVPFTRQT----LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                   +     L+FSAT   ++QK++E FL++   + V    ST+E           
Sbjct: 380 VQGSDMPDKHLRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSEN--ITQRVIEC 437

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              K        +   D+    ++F   K+    L   L        AIHG+  QR R +
Sbjct: 438 DSDKDKDSALLDILCSDSTGLTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERER 497

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G   ++VA+ +AARGLDIP+V HV N+D+PN  ++Y+HRIGRTGRAG  G + 
Sbjct: 498 ALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGLST 557

Query: 347 TLVAK-EDIKHIDAIEKLIEKKVDWLNGDLSSL 378
              ++ ++ K   ++  L++     +   L  L
Sbjct: 558 AFFSRIKNFKIARSMVDLLKDANQEVPDFLEKL 590


>gi|260790599|ref|XP_002590329.1| hypothetical protein BRAFLDRAFT_279393 [Branchiostoma floridae]
 gi|229275521|gb|EEN46340.1| hypothetical protein BRAFLDRAFT_279393 [Branchiostoma floridae]
          Length = 689

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 128/470 (27%), Positives = 222/470 (47%), Gaps = 23/470 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F+DL L  K    +  A Y  PT +Q  +I   L   D+ G A+TG+GKT +F+LP + 
Sbjct: 59  KFSDLPLCRKTQQGLQAADYKFPTDVQKNSIHPALLGRDILGAAKTGSGKTLAFLLPVLE 118

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +     ++      LI+ PTRELA Q+ +   K GK ++ +  L+IGG     +++++ 
Sbjct: 119 GLWRLQWSQQDGLGALIITPTRELAYQIFEVLRKVGKKHDFSAGLVIGGKDVTEESQQIY 178

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   V+      +            N++ILV+DEADR+LD+GF   +  I   +P TRQT
Sbjct: 179 RTNIVICTPGRLLQHMDETAYFEATNLQILVLDEADRILDLGFAATMNAIIQNLPPTRQT 238

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT T  ++ ++   L+NP  I V+     +   +        +  +K   L     
Sbjct: 239 MLFSATQTKSVKDLARLSLKNPVYISVHEHHKFSTPQKLKQSYLVCELHQKL-DLLFSFI 297

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                   ++F +  K V  +  +    + G SV  +HG + Q  R+ + ++F       
Sbjct: 298 KNHLRSKVLVFLSSCKQVRYVYEAFCRLQPGMSVLCLHGKMPQMKRVDVYNSFCRKQHVC 357

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLD P V  V   D P  A+ YIHR GRT R    G++  ++   + + + 
Sbjct: 358 LLATDIAARGLDFPAVHWVLQLDCPEDADTYIHRAGRTARYESDGESLLVLMPSEERQM- 416

Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLEKIDI--AQHNHARKNNPIPQKSTGFDRRKKNYS 414
            +++L +KK+  + +  + S       K+++  AQ  H +++             +K + 
Sbjct: 417 -LQQLTDKKIPVEKIRVNPSKFYSIQMKLEVLCAQDVHMKESA------------QKCFV 463

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
           S      L+ ++++  + +   EN A SLG     P     +N  K  +K
Sbjct: 464 SYLRSYYLQPNKQVFDVNKLPLENYASSLGL-AVAPRVRFLQNAAKGKEK 512


>gi|329925824|ref|ZP_08280569.1| putative DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus
           sp. HGF5]
 gi|328939612|gb|EGG35959.1| putative DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus
           sp. HGF5]
          Length = 448

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 128/461 (27%), Positives = 222/461 (48%), Gaps = 21/461 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG++  +   + + G V P+P+Q + IP +L+  DV   +QTGTGKT +++LP+L 
Sbjct: 5   TFHTLGIAEDLSSRLAEFGIVTPSPVQAEAIPPILEGKDVLATSQTGTGKTLAYLLPVLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++  + LIL PT+ELA Q+    E+YG+   + V  LIGG   + Q +KL  
Sbjct: 65  GIDP---EIKGAQKLILAPTQELAVQIVRESERYGEARGIGVLGLIGGAAAKRQIEKLRL 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+ +     KL M+ +  +V+DE D++ ++G    +  I       RQ +
Sbjct: 122 HPQLIVGTPGRVRELIEIRKLKMHQVTTIVVDEVDQVFNLGGAGDVDRILRSALRDRQLV 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
             SAT++ E  ++ +  +  P  I ++    T   +EH     +    +    + + +  
Sbjct: 182 FLSATVSPETAELVKKEMDQPVEIGIDPERRTPSALEH---YYFVSEERDKLDMLRRVVR 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F N  +++  +   L   G +  A++G+ D+ +R ++L+ F+EG  +L+VA
Sbjct: 239 HYNPDRAIVFVNATEDLAEVEAKLNYLGLNAAALYGDADKMTRSRVLNAFREGRTKLLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDI  +G V N+D P  AE+Y HR GRTGR GR G A TLV       +    
Sbjct: 299 SDVAARGLDIEGLGMVINYDPPIDAEHYTHRAGRTGRMGRSGMAITLVTDRQTFIMRKFN 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           + +   ++        +  P         +        P+ S     RK   + + + I 
Sbjct: 359 RELGISIEERALYGGKVRTP--------RSAPTDRGQGPRGSAAGAARKDKPARKPASIS 410

Query: 422 LKESE---KISKLQQDIQENDADSLGFRGNMPAFMLPKNRG 459
           +       K S  +Q  +E D  + G     P ++  K   
Sbjct: 411 VNGKSGNGKASGERQSERERDRKNKG----APKWLKNKPPR 447


>gi|183599789|ref|ZP_02961282.1| hypothetical protein PROSTU_03297 [Providencia stuartii ATCC 25827]
 gi|188022053|gb|EDU60093.1| hypothetical protein PROSTU_03297 [Providencia stuartii ATCC 25827]
          Length = 447

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 136/400 (34%), Positives = 211/400 (52%), Gaps = 6/400 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F +L L   ++ A+ D GY +PT IQ   IP  +   DV G A TGTGKTA+F+LP + 
Sbjct: 5   TFTELELDESLINALADKGYERPTAIQAAAIPAAMDGRDVLGSAPTGTGKTAAFLLPAIQ 64

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +L+  R +   PR LIL PTRELA QVAD  ++   + +L +A + GG+ +    +   
Sbjct: 65  HLLDFPRKKSGPPRVLILTPTRELAMQVADQAKELCAHNHLDIATITGGVAYMNHAEVFS 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              D+++ T GR+L +          +EIL++DEADRMLDMGF   I+ I     + +QT
Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVEILILDEADRMLDMGFANDIETIAGETRWRKQT 184

Query: 181 LLFSAT-MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LFSAT   + ++  SE  L++P  I+  +     + I+  +        K   L    L
Sbjct: 185 MLFSATLEGEAIRDFSERLLEDPVEIDAESSRRERKKIQQFYYRADNLQHKTALLC--HL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             Q+ +   I+F  +++ V  +   L   G   C + G + Q  R + +     G ++++
Sbjct: 243 LKQEDVTKSIVFVRKRERVREVVQWLRDAGIESCYLEGEMAQAKRNEAVRRLVTGQVKVL 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLDI +V HVFNFD+   A+ Y+HRIGRTGRAGR G A +L+   D      
Sbjct: 303 VATDVASRGLDIDNVSHVFNFDMSRTADVYLHRIGRTGRAGRKGTAISLIEAHDYPLFGK 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           + + IE  +     D  SL P  +    +  N  + +  +
Sbjct: 363 VSRYIEDSIKMRVID--SLRPSTKAPSESMMNKPKPSKKV 400


>gi|159113799|ref|XP_001707125.1| ATP-dependent RNA helicase p54, putative [Giardia lamblia ATCC
           50803]
 gi|157435228|gb|EDO79451.1| ATP-dependent RNA helicase p54, putative [Giardia lamblia ATCC
           50803]
          Length = 430

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 101/391 (25%), Positives = 170/391 (43%), Gaps = 7/391 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  +++  +   G+ + TP+Q   IP +L R DV   A+ GTGKT SF++P+L +
Sbjct: 23  FSSLGLKQELLMGLTQEGFQQLTPVQELAIPHILARRDVVARAKNGTGKTGSFLIPILQM 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +   +  ++    L         A+VA    K   +    +   IGG+      ++    
Sbjct: 83  VNPAKDHIQALVLLHTRELAMQTAKVAKTLSKNMPDVTGRIMCAIGGVSIAEDRERAREK 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+    +   L   +  I+V+DEAD +L   FI  I+N  +     R+  L
Sbjct: 143 PLVVLATPGRLQQLIDEEILNFRDCSIVVLDEADMLLSQNFIRSIENCLAACSNKRRQTL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           F +       K   +              S        +V    +   K  LL  L++  
Sbjct: 203 FFSATFSNSLKEFCDKHLRDPEYVNAMQDSLLLRGVTQYVCMLKEDRYKLKLLSLLMKHL 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  +   + ++         ++        H  +    R +I  NF  G  +L++A+
Sbjct: 263 KINQCIVFVNSVQRCEALYRSICDEFRVPCLYTHSRMSPEERSRIYDNFIHGQARLLIAT 322

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDAIE 361
           +L  RG+DI  V  V NFD P  A+ Y+HRIGR+GR G  G A T+VA   + +    I+
Sbjct: 323 ELFTRGIDIRMVNVVVNFDTPLSADAYLHRIGRSGRYGHLGIAITMVAGDNEKRRFLTID 382

Query: 362 KLIEKK----VDWLNGDLSSLNPPLEKIDIA 388
             I+ +    +  L  D S +  PL+  D +
Sbjct: 383 SYIQGQANSMIHILPKDPSEI--PLDLYDAS 411


>gi|315042486|ref|XP_003170619.1| ATP-dependent RNA helicase eIF4A [Arthroderma gypseum CBS 118893]
 gi|311344408|gb|EFR03611.1| ATP-dependent RNA helicase eIF4A [Arthroderma gypseum CBS 118893]
          Length = 396

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 128/377 (33%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L+P+++  V   G+ +P+ IQ + I  V++  DV   AQ+GTGKTA+F +  L 
Sbjct: 24  SFDAMNLNPELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++  + LIL PTRELA Q+       G   ++     IGG       K L+ 
Sbjct: 84  KVDTN---LKACQALILAPTRELAQQIQKVVVAIGDFMSVDCHACIGGTNVRDDMKALQD 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I   +P + Q +
Sbjct: 141 GPQVVVGTPGRVHDMIQRRVLKTDHIKMFVLDEADEMLSRGFTEQIYDIFQFLPQSTQVV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 201 LLSATMPPDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L+ + F+V A+HG+++Q  R  I+  F+ G+ ++++A
Sbjct: 259 TVTITQAVIFCNTRRKVDWLTDKLQARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 379 QFYSTQIEEMPMNVADL 395


>gi|223983404|ref|ZP_03633590.1| hypothetical protein HOLDEFILI_00870 [Holdemania filiformis DSM
           12042]
 gi|223964576|gb|EEF68902.1| hypothetical protein HOLDEFILI_00870 [Holdemania filiformis DSM
           12042]
          Length = 474

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 118/403 (29%), Positives = 208/403 (51%), Gaps = 13/403 (3%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L   +  AV    Y +PTP+Q + IP  L+  D    A+TG+GKTA++ LP+        
Sbjct: 10  LEADLRQAVEALHYTQPTPVQEQVIPAFLEGRDCLVQAKTGSGKTAAYALPVCQQCHF-- 67

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
              R+P+ LIL PTRELA Q+    + +     LT A L+G  P ++Q  +L++   ++I
Sbjct: 68  -EDRLPQALILAPTRELADQITQEIQNFSLFRRLTCARLVGRQPMKSQKYQLKQRVQIVI 126

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+ DH  +G L ++ ++++V+DEAD+M  +G    +  I   +P   QT LFSAT+
Sbjct: 127 GTPGRVWDHIEQGTLDLSQLKMIVLDEADQMFSLGLTETVHQILEQLPSPIQTCLFSATL 186

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
           + E+ +++E  + +P  I++++P  T + I    +                + S     +
Sbjct: 187 SPEILQLAEITVHDPLTIQIDSPCQTNQNIRLTSLTVSNTEK---LTGLLHVFSTIQAPS 243

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            I+FC+++     +   L+K+G    A+HG ++Q  R  +L  F++G ++++ A+D+AAR
Sbjct: 244 AIVFCDRQMTAEEVAEQLKKRGLCADALHGGMEQDQRFAVLKQFRQGQLRILCATDVAAR 303

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           GLDI  +  + ++D+P   E++IHR GR GR  + G +  L+         +  + +E +
Sbjct: 304 GLDIDGLSLIVHWDLPLNLESFIHRCGRCGRIDQLGTSVALLTPSQKSRYSSFLETLETQ 363

Query: 368 VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
            +    D      P +      H    KN   P+K+    + K
Sbjct: 364 DEAFELD------PFDDHSGLAHWKT-KNQRQPEKAAELKQNK 399


>gi|296810762|ref|XP_002845719.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28 [Arthroderma
           otae CBS 113480]
 gi|238843107|gb|EEQ32769.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28 [Arthroderma
           otae CBS 113480]
          Length = 801

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 94/418 (22%), Positives = 172/418 (41%), Gaps = 23/418 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +++  L  +++  +   GY +P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+L  
Sbjct: 374 WSESNLPKRLLDIIDSVGYKEPSPIQRVAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVY 433

Query: 63  -------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                   E    R   P  +IL PTRELA Q+     K+    N  V  ++GG   E Q
Sbjct: 434 ISSLPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEEQ 493

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +P
Sbjct: 494 AYNLRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALP 553

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
            + +          +            ++  + T +  +                    +
Sbjct: 554 VSNEKPDTEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNV 613

Query: 236 QQLLQSQDTMKNGIIFCNQKKN------VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            + + + +     +   +++K                    ++      + +  +    S
Sbjct: 614 GEAVDTVEQRVEFVAGEDKRKKRLADILTSREYRPPIIVFVNIKRNCDAVARDIKHMGFS 673

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV----PNRAENYIHRIGRTGRAGRHGKA 345
                  +     + A   +       +   D+     +  ++Y HRIGRTGRAG+ G A
Sbjct: 674 AVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDSYTHRIGRTGRAGKSGVA 733

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
            T +  ED   +  +++++      +   +S +   L K + AQ    R      QK 
Sbjct: 734 ITFLGNEDNDVLYDLKQML------MKSSISRVPEELRKHEAAQSKPVRGMGAAGQKK 785


>gi|227541917|ref|ZP_03971966.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227182360|gb|EEI63332.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 455

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 135/391 (34%), Positives = 209/391 (53%), Gaps = 4/391 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG++ ++  A+     V    IQ  T+P+ L+  D+ G A+TG GKT  F +P+L 
Sbjct: 9   TFTELGVAQEITDALATQSIVDTFAIQALTLPIALEGRDLIGQARTGMGKTLGFGVPVLD 68

Query: 62  ILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +            PR LI+ PTREL  QV ++  +   N  + V  + GG P+E Q K 
Sbjct: 69  RIFDDADIEELDGTPRALIVVPTRELCVQVGEDLTRAAVNLPVRVTTIYGGTPYEEQEKA 128

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+++ TPGR++D +NRG+L ++ + ILV+DEAD MLD+GF+P I+ I + +    
Sbjct: 129 LKDGTDLVVGTPGRLIDLYNRGELRLDTVRILVLDEADEMLDLGFLPAIEKIIAGITAEH 188

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATM D +  ++  F  N         S  AET        +  +      +   
Sbjct: 189 QTMLFSATMPDAILGLARGF-MNKPVHIRAEMSGEAETNATTKQVVFKSHRMDKVAVISR 247

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +         IIF   K++   +   L   GF V ++HG++ Q +R + L  F++G + +
Sbjct: 248 VLQARGRGRTIIFVRTKRSAAEVARDLAGAGFQVASVHGDMSQSARERSLQGFRDGVVDI 307

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI DV HV N+  P+    Y+HRIGRTGRAG  G A TLV  +++    
Sbjct: 308 LVATDVAARGIDIDDVTHVINYQTPDDELTYVHRIGRTGRAGHTGTAVTLVGYDELPKWK 367

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
            I   +    D L    S+     E++DI +
Sbjct: 368 LINDELGLGKDELPEWFSTSPELYEELDIPE 398


>gi|47224688|emb|CAG00282.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 497

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 123/410 (30%), Positives = 206/410 (50%), Gaps = 36/410 (8%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--MLTILEKGR 67
           P+++  +   G+ KPTPIQ +  P+++   D+  IAQTGTGKT +++LP  +    +   
Sbjct: 87  PEIMDNIRRVGFDKPTPIQSQAWPVLMSGEDLIAIAQTGTGKTLAYLLPGFIHMDGQPVP 146

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
              R    +++       A   +   K  +  + T   + GG     Q  K++ G D++I
Sbjct: 147 RSKRNGPAMLVLTPTRELALQIEAESKKYRFLDYTSVCIYGGGDRNGQIAKVQSGVDIVI 206

Query: 128 CTPGRILDHFNRGKLLMNNIEIL---------VIDEADRMLDMGFIPYIQNITSLVPFTR 178
            TPGR+ D      + + ++  L         V+DEADRMLDMGF P I  I   V   R
Sbjct: 207 ATPGRLNDLQMNELIHLRSVTYLVRVSIGFPEVLDEADRMLDMGFEPQIMKILLDVRPDR 266

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT++ SAT    ++++++++L++P  + V T    A       +    +  KK  +    
Sbjct: 267 QTVMTSATWPTAVRRLAKSYLRDPMIVYVGTLDLAAVNTVEQKILIVNEEEKKFYMFD-F 325

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           ++  + +   +IF  +K  V +L   +  QG SV ++HG+ +Q  R + L  F+EG +++
Sbjct: 326 IRDMEPLDKVLIFVGRKILVDDLSSDMCLQGISVQSLHGDREQCDREEALREFREGKVRI 385

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG------------------ 340
           +VA+DLA+RGLD+ D+ HVFN+D P   E Y+HR+GRTGRAG                  
Sbjct: 386 LVATDLASRGLDVLDITHVFNYDFPRNIEEYVHRVGRTGRAGWVFFLKKPRVYSGFSLTS 445

Query: 341 ------RHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
                 R G A TLV+++D K    +  ++E+    +  +L  +    EK
Sbjct: 446 AFFSSRRSGAAVTLVSRDDWKMAPELICILERAGQDVPEELVKMAARYEK 495


>gi|283832995|ref|ZP_06352736.1| ATP-independent RNA helicase DbpA [Citrobacter youngae ATCC 29220]
 gi|291071607|gb|EFE09716.1| ATP-independent RNA helicase DbpA [Citrobacter youngae ATCC 29220]
          Length = 457

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 136/383 (35%), Positives = 214/383 (55%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY++ TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPAAQLENLNELGYLEMTPVQAAALPAILAGRDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++     +   ++L+L PTRELA QVA    +  +    T  L + G  PF AQ   L+
Sbjct: 64  HIDAA---LFQMQSLVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I  +    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDEVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  +S    Q+P  IE++T     + +       +   S     L Q L 
Sbjct: 181 LLFSATWPEAIAAISGRVQQDPLTIEIDTV----DALPAIEQQFFETSSHGKIPLLQKLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN KK+   +C +L   G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SQYQPASCVVFCNTKKDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E +IHRIGRT RAG  G A +  A E+ +  + +
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHIHRIGRTARAGNSGLAISFCAPEEAQRANIL 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
            ++++ K++WL    +    PLE
Sbjct: 357 SEMLQLKLNWLPAPGNGSILPLE 379


>gi|229048004|ref|ZP_04193580.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH676]
 gi|228723461|gb|EEL74830.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH676]
          Length = 436

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 114/375 (30%), Positives = 201/375 (53%), Gaps = 6/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L 
Sbjct: 5   TFTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLN 64

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +   R  V+ +      E  +++  ++    +   ++  +T   LIGG   +   +KL+
Sbjct: 65  RINASREEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   Q 
Sbjct: 125 KQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +     +    L   + 
Sbjct: 185 LVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKH---RNKIDLVHKML 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q +V
Sbjct: 242 LQFKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +D++
Sbjct: 302 ATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEVLDSL 361

Query: 361 EKLIEKKVDWLNGDL 375
           EK  ++ +++ + DL
Sbjct: 362 EK--QRHIEFKHVDL 374


>gi|227550039|ref|ZP_03980088.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227077885|gb|EEI15848.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 430

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 136/396 (34%), Positives = 214/396 (54%), Gaps = 4/396 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG++ ++V A+ + G      IQ    PL L   DV G A+TG GKT +F +P+L 
Sbjct: 14  TFAELGVAAEIVDALHELGITHTFSIQELAAPLALAGKDVIGQARTGMGKTYAFGVPLLD 73

Query: 62  ILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +            PR LI+ PTRELA QV ++  +  K   + +  + GG P+EAQ   
Sbjct: 74  RVFDDADVAELDGTPRALIIVPTRELAVQVGEDLSRAAKYTPVRITTVYGGRPYEAQIAV 133

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G DV++ TPGR++D  NRG L ++ + +LV+DEAD MLD+GF P IQ + + +P   
Sbjct: 134 LSSGVDVVVGTPGRLIDLLNRGNLQLDRVAVLVLDEADEMLDLGFFPDIQKLWAALPQPV 193

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSATM   +  ++ + +  P  I     ++ +       V   +    K  +  ++
Sbjct: 194 QAMLFSATMPGPILTLARSLMNRPVHIRAEAANTPSTHSTTRQVVFRSHRMDKLEVTARI 253

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ++      I+F   K+    +   L ++GF V ++HG++ Q +R + L  F+ G + +
Sbjct: 254 LQARGRG-RTIVFTRMKRTAAEVARDLAERGFDVGSVHGDLGQGAREQALEAFRSGEVSI 312

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ DV HV NF  P+    Y+HRIGRTGRAG+ G A TLV  ++ +   
Sbjct: 313 LVATDVAARGIDVDDVTHVINFQTPDDPMTYVHRIGRTGRAGQTGIAVTLVGFDEGQKWT 372

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           AI   +  ++       S+     E +DI      R
Sbjct: 373 AINAELGLEMPDPPAWFSTSPELYEALDIPDSAGER 408


>gi|302552490|ref|ZP_07304832.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
           40736]
 gi|302470108|gb|EFL33201.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
           40736]
          Length = 721

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 153/459 (33%), Positives = 225/459 (49%), Gaps = 24/459 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L
Sbjct: 120 VTFADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTL 179

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  GR     PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LE
Sbjct: 180 ARLAGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVVGLKMKVVCGGTSMGNQIYALE 239

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+ D  NRG   + N+E+ V+DEAD+M D+GF+P +  +   VP   Q 
Sbjct: 240 RGVDILVATPGRLRDIINRGACSLENVEVAVLDEADQMSDLGFLPEVTELLDQVPAGGQR 299

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM +E+  + + +L NP   EV++      T+ H  +       K          
Sbjct: 300 MLFSATMENEISTLVKRYLSNPVTHEVDSAQGNVTTMSHHILIV-----KPKDKAPVTAA 354

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   +     +   L   G    A+HG + Q +R ++L +FK+G +  +V
Sbjct: 355 IASRKGRTIIFVRTQLGADRIAEQLCDSGVKADALHGGMTQGARTRVLEDFKKGYVNALV 414

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L      +    I
Sbjct: 415 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLSLPHQRRQ---I 471

Query: 361 EKLIEKK-VDWLNGDLSS---LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            +L+E   VD     + S    +P     ++A+   AR    +  +S G   ++   + +
Sbjct: 472 FRLMEDAGVDATRHIIQSAGAFDP-----EVAEITGARSMTEVQAESVGNAAQQ---AER 523

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGF----RGNMPA 451
           +     KE E+  +   +++E     L      RG  PA
Sbjct: 524 EVAQLTKELERAQRRANELREESDRLLARVARERGEEPA 562


>gi|311743785|ref|ZP_07717591.1| ATP-dependent RNA helicase DeaD [Aeromicrobium marinum DSM 15272]
 gi|311312915|gb|EFQ82826.1| ATP-dependent RNA helicase DeaD [Aeromicrobium marinum DSM 15272]
          Length = 470

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 128/400 (32%), Positives = 198/400 (49%), Gaps = 8/400 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P++  A+   G   P PIQ  T+ + L   D+ G A+TGTGKT +F +P++         
Sbjct: 2   PEIADALTGHGIETPFPIQEMTLSVALMGTDLIGQARTGTGKTLAFAIPVIQRTVAPHDP 61

Query: 70  VR-------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
                     P+ LI+ PTRELA QVA +     K        + GG+P+E Q   LE G
Sbjct: 62  EYGELAAPGKPQALIIAPTRELAIQVAGDVAMASKLRGTRNLTIYGGVPYEGQLDALESG 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGRILD  NR  L +++++ +V+DEAD MLD+GF+P ++ I +  P  RQT+L
Sbjct: 122 VDIVIGTPGRILDLANRRALDLSHVKSMVLDEADEMLDLGFLPDVEAILAKTPELRQTML 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM   +  ++               S   + +       +  +      +   +   
Sbjct: 182 FSATMPGAIVGLARK-HMRHPMNIRAESSEDTQMVPATAQFVWQAHDMDKPEIVSRILQA 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           D +   IIF   K+    +   L  +GF    +HG++ Q +R K L  F++G I  +VA+
Sbjct: 241 DDVARVIIFTRTKRTAQRVADELVDRGFPASPLHGDMAQTAREKALQRFRDGKINTLVAT 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+D+ ++ HV N++ P   + Y+HRIGRTGRAG  G A T V   D+     I  
Sbjct: 301 DVAARGIDVANISHVINYNCPEDDKTYVHRIGRTGRAGASGIAVTFVDWADLHRWKMINT 360

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
            +           SS +     + I++    R   P P++
Sbjct: 361 ALGLPFAEPQETYSSSDHLFHDLGISRDVKGRLKPPSPKE 400


>gi|446778|prf||1912301A initiation factor eIF-4A
          Length = 402

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 197/377 (52%), Gaps = 6/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F + +L 
Sbjct: 31  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQ 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 91  QIDTSIRE---CQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR           V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 148 GCHVVVGTPGRVYDMINRKLRTQYIKLF-VLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F+++P  I V     T E I+  +V    +  K   L       
Sbjct: 207 LLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDL--YD 264

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFC  ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 265 TLSITQSVIFCTTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 324

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  +D + +  IE
Sbjct: 325 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIE 384

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 385 QFYHTTIEEMPANIADL 401


>gi|115704798|ref|XP_780056.2| PREDICTED: similar to Ddx10 protein [Strongylocentrotus purpuratus]
 gi|115951003|ref|XP_001192050.1| PREDICTED: similar to Ddx10 protein [Strongylocentrotus purpuratus]
          Length = 867

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 220/472 (46%), Gaps = 27/472 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  LS + + A+ +AGY  PT IQ   I L LQ HDV G A+TG+GKT +F++P+L 
Sbjct: 63  SFSDFPLSKRTLSALEEAGYKVPTEIQRGAIGLSLQGHDVLGAAKTGSGKTLAFLIPILE 122

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L +    V      L++ PTRELA Q  +   K G N++ +  L+IGG   + + +++ 
Sbjct: 123 CLYRNSWSVPDGLGALVISPTRELAYQTFEVLCKVGANHDFSAGLIIGGKDLKTEMERIP 182

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V+      +            N++ILV+DEADR+LD+GF   I  I   +P  RQT
Sbjct: 183 KTNVVVCTPGRLLQHMDETACFESLNLKILVLDEADRILDLGFQRTIDAILDHLPAERQT 242

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT T  ++ ++   L  PK + V+   + +  ++        +  +K   +     
Sbjct: 243 LLFSATQTKSVRDLARLSLLEPKYVAVHEHHTHSTPVQLEQSYIVCELEQKL-DVLYSFI 301

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI--HGNIDQRSRMKILSNFKEGTIQL 298
                +  ++F +  K V      L K    V  +  +G++ Q  RM +   F      +
Sbjct: 302 KAHMKQKTLVFMSSCKQVKYTFEVLCKLNPGVSVMALYGSMHQLRRMAVYEEFCVRESAV 361

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARGLD P V  V   D P  +  YIHR+GRT R  + G+A  ++   + + + 
Sbjct: 362 LLATDIAARGLDFPAVNWVVQLDCPEDSSTYIHRVGRTARYEKDGEALLVLLPSEEEAMV 421

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           A              ++ +   P+EKI++  + + R       +S      +   S+Q++
Sbjct: 422 A--------------EMETRRIPIEKIEV--NPNKRFAIEKKLQSFCAQNLELKQSAQRA 465

Query: 419 HIPLKESEKISKLQQDIQ------ENDADSLGFRGNMPAFMLPKNRGKLNDK 464
            I   +S  + K +          +N A +LG     P     +N  K   +
Sbjct: 466 FIAYLKSVYLMKNKDIFHVHVLSLDNFAKALGL-AVAPRVRFIQNAEKRKQE 516


>gi|56963462|ref|YP_175193.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
 gi|56909705|dbj|BAD64232.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
          Length = 453

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 124/428 (28%), Positives = 202/428 (47%), Gaps = 16/428 (3%)

Query: 1   MD---FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           M+   F+ LGL+ +++  +   G  +PT IQ + IP +L R DV G +QTGTGKT +F+L
Sbjct: 1   MNAEHFSRLGLNERLLKGLSAIGVKRPTEIQERLIPAILNRKDVIGQSQTGTGKTFAFLL 60

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           P++  L+  +  V+   T                   Y          + G        +
Sbjct: 61  PIIEQLDIEQNEVQAVITAPTRELCAQLFDELKKLIVYYDGQVDAQLFVGGTDRKRQAQR 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              +   ++I TPGRI D  N   LL+   + LV+DEAD+MLDMGF+  +  +   +   
Sbjct: 121 LSTKQPHIVIGTPGRIADLVNTSSLLVYTAKTLVVDEADQMLDMGFLEDVDKVAGRLAED 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+ ++LQ   + ++ NP+ + V      AE + H  V       +    + +
Sbjct: 181 LQMLVFSATVPEKLQPFLKKYMNNPRHVHVQPEKLAAERVTHQLVPVRH---RDKLTVLK 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      IIF N K+    +  +L  +   V  +HG +  R R K++   ++ +IQ
Sbjct: 238 ETIRGLNPYLAIIFTNTKEQADEVTAALATEDILVDCLHGGLAPRERKKVMKRVEDLSIQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V H+ N+  P   + Y+HR+GRT RAG  G A +L  + D    
Sbjct: 298 YLVATDLAARGIDIKGVTHIINYAFPQDLDFYVHRVGRTARAGADGIALSLYEQSDEA-- 355

Query: 358 DAIEKLIEKKV-----DWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            A  KL  + +     ++ +G+ + L  PP+    I +     K     +K TG +R  +
Sbjct: 356 -ACAKLASRGIVFSFVEFKDGEWTELVKPPVGAGRINRKQPTDKGKATVEKQTG-NRPIR 413

Query: 412 NYSSQKSH 419
                K+ 
Sbjct: 414 TGGKAKAR 421


>gi|226292592|gb|EEH48012.1| ATP-dependent RNA helicase DED1 [Paracoccidioides brasiliensis
           Pb18]
          Length = 687

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 129/393 (32%), Positives = 202/393 (51%), Gaps = 19/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F +  L   ++  ++ + Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+   
Sbjct: 200 FTNPPLHEHLLSNIILSRYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSK 259

Query: 60  ---------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                          GR     P  LIL PTREL +Q+ D   K+     L   ++ GG 
Sbjct: 260 SLEKRGPDGDAPRGLGRQSKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVYGGA 319

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L++G +VL+ TPGR++D   RG++ +++I+ LV+DEADRMLDMGF P I+ I
Sbjct: 320 EMGNQLRQLDQGCNVLVATPGRLVDMMERGRISLSHIQYLVLDEADRMLDMGFEPQIRRI 379

Query: 171 TSLVPFTRQT----LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                   +     L+FSAT   ++QK++E FL++   + V    ST+E           
Sbjct: 380 VQGSDMPDKHLRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSEN--ITQRVIEC 437

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              K        +   D+    ++F   K+    L   L        AIHG+  QR R +
Sbjct: 438 DSDKDKDSALLDILCSDSTGLTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERER 497

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G   ++VA+ +AARGLDIP+V HV N+D+PN  ++Y+HRIGRTGRAG  G + 
Sbjct: 498 ALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGLST 557

Query: 347 TLVAK-EDIKHIDAIEKLIEKKVDWLNGDLSSL 378
              ++ ++ K   ++  L++     +   L  L
Sbjct: 558 AFFSRIKNFKIARSMVDLLKDANQEVPDFLEKL 590


>gi|149236910|ref|XP_001524332.1| ATP-dependent RNA helicase SUB2 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152112304|sp|A5E3W5|SUB2_LODEL RecName: Full=ATP-dependent RNA helicase SUB2
 gi|146451867|gb|EDK46123.1| ATP-dependent RNA helicase SUB2 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 433

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 165/375 (44%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q   IP  +   DV   A++G GKTA FVL  L  
Sbjct: 51  FRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQ 110

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+     +         E   ++  + A   +                     + K  + 
Sbjct: 111 LDPVAGEISTLVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGTPVKRDIEKLKNKDT 170

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+        + +NN++  VIDE D++   +     +Q+I    P  +Q 
Sbjct: 171 CPHIVVATPGRLHALVQEKAIRLNNVKSFVIDECDKVLESLDMRRDVQDIFRATPHQKQV 230

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ +++ V + F+QNP  I V+  +         +     +  K        L 
Sbjct: 231 MMFSATLSQDIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYIKLEEKEKNR--KLSDLL 288

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF    +    L   L    F   A+H  + Q  R++   +FKE   ++ V
Sbjct: 289 DSLEFNQVIIFVKSTQRANELNKLLCACNFPSIAVHSGLPQEERIERYKSFKEFNKRICV 348

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           ++D+  RG+DI  +    N+D+PN A+ Y+HR+GR GR G  G   + V  KED + ++ 
Sbjct: 349 STDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLGISFVSTKEDEEVLEK 408

Query: 360 IEKLIEKKVDWLNGD 374
           I+   + K+     +
Sbjct: 409 IQSRFDVKITEFPEE 423


>gi|255719590|ref|XP_002556075.1| KLTH0H04466p [Lachancea thermotolerans]
 gi|238942041|emb|CAR30213.1| KLTH0H04466p [Lachancea thermotolerans]
          Length = 553

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 111/406 (27%), Positives = 198/406 (48%), Gaps = 6/406 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  + LS ++   +    + KPTPIQ  + P +L   DV G+A+TG+GKT +F +P +
Sbjct: 143 LSFDQISLSSEIQEEISK--FPKPTPIQAVSWPYLLSGKDVVGVAETGSGKTFAFGVPAI 200

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+   A+ +  + L++ PTRELA+Q+ DN     K   +    + GG+P + Q  +L+
Sbjct: 201 HNLKTADAKSQGVQVLVISPTRELASQIYDNLILLTKKAGVNCCCVYGGVPKDEQRSQLK 260

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V+      +         L N   +++ +    +         + I S     RQT
Sbjct: 261 KSQVVVATPGRLLDLIEEGSARLSNVKYLVLDEADRMLEKGFEEDIKRIIGSTKATGRQT 320

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV----ATYAQYSKKCALLQ 236
           L+F+AT   E+++++  F+ +P +I +      +       +      + +  K   LL+
Sbjct: 321 LMFTATWPKEVRELANTFMDSPVKISIGNRDELSANKRITQIVEVIDPFKKDRKLLELLK 380

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +           +IF   KK    +  +L+  G++V AIHG++ Q+ R + L+ FK G  
Sbjct: 381 KYQSGARKNDKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGES 440

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG  G A TL  +++   
Sbjct: 441 NMLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGLTGTAHTLFTEQEKHL 500

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
             A+  ++      +  +L       +K + + +    K+    +K
Sbjct: 501 AGALVNVLNGANQPVPEELKKFGTHTKKKEHSAYGAFYKDVDTTKK 546


>gi|146197860|dbj|BAF57641.1| WM6 protein [Dugesia japonica]
          Length = 403

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 94/384 (24%), Positives = 172/384 (44%), Gaps = 5/384 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 22  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLSTLQQ 81

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+                      ++  + F KY  N N++V      I  + +  K   
Sbjct: 82  LDATDDGTCKVLVLCHTRELAFQISKEYERFSKYMSNINVSVFYGGVPIRNDIEKLKKSV 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +     +   L +    ++ +    + ++     +Q +  L P  +Q +
Sbjct: 142 PQLIVATPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVSMRGDVQEVFKLTPHQKQVM 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT++ E++ + + F+Q+P  I ++  S               +  K   L +     
Sbjct: 202 MFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFEL--LD 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      I+F    +  + LC+ L +Q F   AIH  + Q  R+     FK    +L+VA
Sbjct: 260 ELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVA 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAI 360
           ++L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T ++ E D K ++ +
Sbjct: 320 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDV 379

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           +   E  +  L  D+  +   +E+
Sbjct: 380 QNRFEVNISELP-DVVEITTYMEE 402


>gi|119187445|ref|XP_001244329.1| hypothetical protein CIMG_03770 [Coccidioides immitis RS]
 gi|118578050|sp|Q1E0Z3|DBP8_COCIM RecName: Full=ATP-dependent RNA helicase DBP8
          Length = 536

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 116/381 (30%), Positives = 178/381 (46%), Gaps = 17/381 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ LGL+P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F  P+L 
Sbjct: 107 SFSSLGLAPWLVGSLSAMAIRRPTAIQRACIPEILKGRDCIGGSRTGSGKTVAFAAPILH 166

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                         ++L PTRELA Q+ + F+      +L   L+ GG     Q   L  
Sbjct: 167 RW---SEDPFGIFAVVLTPTRELALQIFEQFKAISAPQSLKPVLITGGSEMRPQAIALST 223

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM-------GFIPYIQNITSLV 174
              V+I TPGR+ DH              V        D          +P ++   S +
Sbjct: 224 RPHVVIATPGRLADHIKTSGQDTIYGLNRVRMVVLDEADRLLASGPGSMLPDVETCLSAL 283

Query: 175 PFTRQTLL--FSATMTDEL-----QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           P +       F+AT+T E+         ++ L           ++T              
Sbjct: 284 PPSTSRQTLLFTATVTQEVRALKSMPRPKDRLPIFVTEISTENNTTIPPTLKQCYLQVPM 343

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             ++  L   L    ++ K  IIFCN+ K    L   L + G  V ++H  + Q  R   
Sbjct: 344 THREAFLHVLLSTDANSSKPAIIFCNRTKTADLLDRLLRRLGHRVTSLHSLLPQSERTSN 403

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L+ F+    +L+VA+D+AARGLDIP VG V NFDVP   ++YIHR+GRT RAGR G+A T
Sbjct: 404 LARFRASAARLLVATDVAARGLDIPSVGLVVNFDVPRNPDDYIHRVGRTARAGREGEAIT 463

Query: 348 LVAKEDIKHIDAIEKLIEKKV 368
           LV + D++ + AIE+ + +++
Sbjct: 464 LVGQRDVQLVLAIEERVGRQM 484


>gi|15232722|ref|NP_187573.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|75337164|sp|Q9SF41|RH45_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 45
 gi|6682258|gb|AAF23310.1|AC016661_35 putative RNA helicase [Arabidopsis thaliana]
 gi|332641267|gb|AEE74788.1| DEAD-box ATP-dependent RNA helicase 45 [Arabidopsis thaliana]
          Length = 989

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 108/381 (28%), Positives = 179/381 (46%), Gaps = 36/381 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--L 60
           +   GL+ K++  +    Y KP PIQ + +P+++   D  G+A+TG+GKT  FVLPM   
Sbjct: 398 WHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRH 457

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +        P  L++ PTREL  Q+  +  K+ K   +    + GG     Q  +L+
Sbjct: 458 IKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELK 517

Query: 121 RGADVLICTPGRILDHFNR---GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           RG ++++CTPGR++D           +  +  LV+DEADRM DMGF P I  I   +   
Sbjct: 518 RGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 577

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT   +++ ++   L  P  I+V   S   +      +      S++ + L +
Sbjct: 578 RQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKD--ITQLVEIRPESERFSRLLE 635

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL         ++F   ++  ++   S         ++                      
Sbjct: 636 LLGEWYEKGKVLVFVRSQEKSISDFKSDVCNLLIATSVAAR------------------- 676

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
                     GLD+ ++  V NFD PN  E+Y+HR+GRTGRAGR G A T ++++D K+ 
Sbjct: 677 ----------GLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYA 726

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             + K +E     +  D+ ++
Sbjct: 727 PDLVKALELSEQPVPDDVKAV 747


>gi|296804908|ref|XP_002843302.1| ATP-dependent RNA helicase has1 [Arthroderma otae CBS 113480]
 gi|238845904|gb|EEQ35566.1| ATP-dependent RNA helicase has1 [Arthroderma otae CBS 113480]
          Length = 578

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 117/406 (28%), Positives = 199/406 (49%), Gaps = 19/406 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL LS   V A+   G+   T IQ + IP  L   D+ G A+TG+GKT +F++P + 
Sbjct: 93  KFSDLSLSEPTVKAIAGMGFTTMTEIQQRGIPPSLAGRDILGAAKTGSGKTLAFLIPAVE 152

Query: 62  ILEKGRARVRMPRTL-------ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           IL   + + R            I+ PTRELA Q+     +  ++++ T  ++IGG    A
Sbjct: 153 ILRSLKFKPRNGMIFQLGTGALIITPTRELALQIFGVARELMEHHSQTYGVVIGGANRRA 212

Query: 115 QNKKLERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           + +KL +G +VLI TPGR +    +    +  N++ LVIDEADR+L++GF   ++ I S+
Sbjct: 213 EAEKLNKGVNVLIGTPGRLLDHLRSTEGFVFKNLKTLVIDEADRILEVGFEDELRQIISI 272

Query: 174 VPFTRQTLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           +P   +  + FSAT T +++ ++   L+               T++          + K 
Sbjct: 273 LPKDDRQTMLFSATQTTKVEDLARISLKPGPLYINVDHKKEHSTVDGVEQGFIICEAHKR 332

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL      ++  K  I+F +   +V      L      V ++HG + Q+ R      F 
Sbjct: 333 FLLLFSFLKKNAKKKIIVFFSSCNSVKYYSELLNYIDLPVLSLHGKLKQQKRTNTFFEFC 392

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAK 351
                 ++ +D+AARGLDIP V ++   D P+   +YIHR+GRT R  G+ G++   +  
Sbjct: 393 NSAQGTLICTDVAARGLDIPAVDYIVQLDPPDDPRDYIHRVGRTARGKGKVGRSLMFLQP 452

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLS-----SLNPPLEKIDIAQHNH 392
            ++     I  L E +V  +  +       ++   LEK+ I+Q+ +
Sbjct: 453 SEVGF---INHLREARVPVVEFEFPTKHIINIQSQLEKL-ISQNYY 494


>gi|308504808|ref|XP_003114587.1| hypothetical protein CRE_28204 [Caenorhabditis remanei]
 gi|308258769|gb|EFP02722.1| hypothetical protein CRE_28204 [Caenorhabditis remanei]
          Length = 631

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 133/400 (33%), Positives = 201/400 (50%), Gaps = 17/400 (4%)

Query: 2   DFADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F ++     ++  +  + G V PT IQI+ IP+ L   D+ GIA TG+GKT +FVLP++
Sbjct: 191 SFLEMKFPKTLLEFMQNEKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLV 250

Query: 61  TIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGG 109
                   +    R   P  LI+ P+RELA Q+ D   +     N      +   L IGG
Sbjct: 251 MFCLEQELKLPFMRNEGPFGLIIVPSRELARQIYDLVIEMFDAINKAGLPEMRAGLCIGG 310

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +P   Q K    G  +++ TPGR+ D   +  + +     LV+DEADRMLDMGF   I++
Sbjct: 311 VPIGEQAKDFRNGIHIVVATPGRLSDMLTKKIINLEVCRYLVLDEADRMLDMGFEDEIKS 370

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I       RQTLLFSATM  ++Q     F ++     +      A       +       
Sbjct: 371 IFYFFKAQRQTLLFSATMPKKIQF----FAKSALVQPIVVNVGRAGAASLNVLQELEFVR 426

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            +  L++ L   Q T    +IF  +K +V N+   L  +G  V +IHG  DQ  R   + 
Sbjct: 427 SENKLVRVLECLQKTSPKVLIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDRHAGIE 486

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F++    ++VA+D+A++GLD   + HV NFD+P   ENY+HRIGRTGR+GR G A T +
Sbjct: 487 AFRKNEKDVLVATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFI 546

Query: 350 AKE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
            K+ ++  +  +++L+ +    L   L  L    E I  A
Sbjct: 547 NKKSEMSVLSDLKQLLVEAGQELPEFLKMLAGDEEGIAPA 586


>gi|254585603|ref|XP_002498369.1| ZYRO0G08580p [Zygosaccharomyces rouxii]
 gi|238941263|emb|CAR29436.1| ZYRO0G08580p [Zygosaccharomyces rouxii]
          Length = 539

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 109/407 (26%), Positives = 193/407 (47%), Gaps = 7/407 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F+ L L P++   +    + KPTPIQ  + P +L   DV G+A+TG+GKT +F +P +
Sbjct: 128 LSFSHLSLKPEIQSEISK--FPKPTPIQSVSWPYLLSGRDVIGVAETGSGKTFAFGVPAI 185

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++  G A+ +  + L++ PTRELA+Q  DN         L    + GG+P + Q  +L
Sbjct: 186 DQLVSNGDAKRKSVKVLVISPTRELASQTYDNLIILTNKVGLECCCVYGGVPKQEQRNQL 245

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V+      +     +   L     +++ +    +           I       RQ
Sbjct: 246 RNSQVVVATPGRLLDLINEQSVDLSQVQYLVLDEADRMLEKGFEEDIKNIINQTNSRDRQ 305

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV----ATYAQYSKKCALL 235
           TL+F+AT   E+++++  F+++P ++ +      +       +        +  K   LL
Sbjct: 306 TLMFTATWPKEVRELASTFMRDPVKVSIGNRDELSANKRITQIVEVIEPRQKDRKLLELL 365

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++           +IF   KK    + ++L+  G+ V AIHG++ Q+ R   L++FK G 
Sbjct: 366 RKYQSGAKKDDKVLIFALYKKEASRVENNLKYNGYDVAAIHGDLSQQQRTSALNDFKAGK 425

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             L++A+D+AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG+ G A TL    +  
Sbjct: 426 SNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTDNEKH 485

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
              A+  ++      +  +L       ++ +   +    K+  + +K
Sbjct: 486 LAGALVNVLNGANQPVPEELKKFGTHTKRKEHGAYGAFFKDVDMSKK 532


>gi|269861020|ref|XP_002650226.1| DEAD box RNA helicase p68 [Enterocytozoon bieneusi H348]
 gi|220066356|gb|EED43841.1| DEAD box RNA helicase p68 [Enterocytozoon bieneusi H348]
          Length = 443

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 131/424 (30%), Positives = 197/424 (46%), Gaps = 23/424 (5%)

Query: 1   MDFADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           + F DL  S ++V       G+  PTPIQ +  P+ L   D+ GIA TG+GKT SF++P 
Sbjct: 27  LSFRDLNFSEELVNFFEVTKGWEHPTPIQSQGWPMALSGRDMIGIAATGSGKTFSFLVPA 86

Query: 60  LTI--LEKGRARVRMPRTLILEPTRE---LAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
                 +        P  ++L PTRE       VA    +     +L    + GG     
Sbjct: 87  YIHAADQPSLREGDGPIVIVLAPTRELATQIGNVATELSQLKIFNHLKPLCVYGGANIFP 146

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q K L  G ++LI TPGR++D  N+G   +N    LV+DEADRMLDMGF P +  I   +
Sbjct: 147 QKKALVNGIEILIATPGRLIDLHNQGFCPLNRCTFLVLDEADRMLDMGFEPQLNQIIPKI 206

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTL++SAT   E++ ++  +        V       +  E          +     
Sbjct: 207 NSHRQTLMWSATWPKEVKSLAYRYTSQDAIQ-VTVGDEELKVNEKIEQRVEIVSNNDKEK 265

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
                         +IFCN+K     L   L +  F   A+HG+  Q  R  I  NFK+G
Sbjct: 266 KLLYTLQDFRDARVLIFCNKKSTCDKLERFLLENRFRGVALHGDKSQHVRDVIFDNFKKG 325

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVA-KE 352
              +++A+D+AARGLD+ D+  V N+D+P   E+Y+HR+GRT R   + GKA T  + +E
Sbjct: 326 RDPILIATDVAARGLDVKDIHLVINYDLPTNLEDYVHRVGRTARGTAKEGKALTFFSLEE 385

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
           D        +L++K    +  +L ++ P              K      K TGF  + K+
Sbjct: 386 DSGLAKRFIELLKKGNVTIPDELLNIKP--------------KYGNNRSKYTGFKSKFKH 431

Query: 413 YSSQ 416
           Y++ 
Sbjct: 432 YNNN 435


>gi|218231735|ref|YP_002369093.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228960551|ref|ZP_04122200.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229111759|ref|ZP_04241307.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock1-15]
 gi|229129563|ref|ZP_04258533.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-Cer4]
 gi|229146871|ref|ZP_04275236.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST24]
 gi|229152486|ref|ZP_04280678.1| ATP-dependent RNA helicase yqfR [Bacillus cereus m1550]
 gi|218159692|gb|ACK59684.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228631094|gb|EEK87731.1| ATP-dependent RNA helicase yqfR [Bacillus cereus m1550]
 gi|228636699|gb|EEK93164.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST24]
 gi|228653880|gb|EEL09748.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-Cer4]
 gi|228671753|gb|EEL27049.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock1-15]
 gi|228799151|gb|EEM46119.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 436

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 114/375 (30%), Positives = 201/375 (53%), Gaps = 6/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L 
Sbjct: 5   TFTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLN 64

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +   R  V+ +      E  +++  ++    +   ++  +T   LIGG   +   +KL+
Sbjct: 65  RINASREEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   Q 
Sbjct: 125 KQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +     +    L   + 
Sbjct: 185 LVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKH---RNKIDLVHKML 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q +V
Sbjct: 242 LQFKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +D++
Sbjct: 302 ATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEALDSL 361

Query: 361 EKLIEKKVDWLNGDL 375
           EK  ++ +++ + DL
Sbjct: 362 EK--QRHIEFKHVDL 374


>gi|223634713|sp|A5DDN0|SUB2_PICGU RecName: Full=ATP-dependent RNA helicase SUB2
          Length = 432

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 97/375 (25%), Positives = 166/375 (44%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q   IP  +   DV   A++G GKTA FVL  L  
Sbjct: 50  FRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQ 109

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+     +         E   ++  + A   +             I       + K  + 
Sbjct: 110 LDPVPGEITTLVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGIPIAKDIEKLKNKDT 169

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+        + +NN++  VIDE D++   +     +Q+I    P  +Q 
Sbjct: 170 CPHIVVATPGRLHALVEEKAIRLNNVKSFVIDECDKVLEAIDMRRDVQDIFRNTPHQKQV 229

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ E++ V + F+QNP  I V+  +         +     +  K        L 
Sbjct: 230 MMFSATLSQEIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYLKLDEKEKNR--KLADLL 287

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF         L   L    F   A+H  + Q  R+    +FKE   ++ V
Sbjct: 288 DSLEFNQVIIFVKSTSRANELNKLLVASNFPSIAVHSAMPQEERIARYKSFKEFNKRICV 347

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           ++D+  RG+DI  +    N+D+PN A+ Y+HR+GR GR G  G A + V +KED + ++ 
Sbjct: 348 STDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAISFVGSKEDEEVLEK 407

Query: 360 IEKLIEKKVDWLNGD 374
           I+   + K+     +
Sbjct: 408 IQSRFDVKITEFPEE 422


>gi|154298930|ref|XP_001549886.1| hypothetical protein BC1G_11712 [Botryotinia fuckeliana B05.10]
 gi|160380630|sp|A6SFV4|DBP8_BOTFB RecName: Full=ATP-dependent RNA helicase dbp8
 gi|150857617|gb|EDN32809.1| hypothetical protein BC1G_11712 [Botryotinia fuckeliana B05.10]
          Length = 545

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 125/430 (29%), Positives = 206/430 (47%), Gaps = 19/430 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L + P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F +P+L 
Sbjct: 117 TFAALNVKPWLVGSLGSMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQ 176

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +          L+L PTRELA Q+ + F+      +L   L+ GG     Q   L +
Sbjct: 177 KWAE---DPFGIFALVLTPTRELALQIYEQFKAISSPQSLKAVLITGGSDMRPQATALAQ 233

Query: 122 GADVLICTPGRILDHFNRGKLLM----NNIEILVIDEADRMLDMG----FIPYIQNITSL 173
              ++I TPGR+ DH              + ++V+DEADR+L  G     +P ++   S+
Sbjct: 234 RPHIVIATPGRLADHIRTSGEDTIGALRRVRMVVLDEADRLLASGSVGSMLPDVEECLSI 293

Query: 174 VPFTRQTLL--FSATMTDELQ----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           +P   +     F+AT+T E++                 EV+T +       +        
Sbjct: 294 LPPPAKRQTLLFTATVTPEVRALKDMPRTPGKLPVFVCEVDTQALAIPPSLNQMHLQVPV 353

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             ++  L   LL  ++  K+ +IFCN+      L H L      V A+H  + QR R+  
Sbjct: 354 THREHYLHMFLLTEKNLPKSIVIFCNRTATADYLTHLLRLLDHRVTALHSKLPQRQRIDN 413

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L  F+    +++VA+D+AARGLDIP+VG V N+D+P   ++YIHR+GRT RAGR G+A +
Sbjct: 414 LGRFRASAARILVATDVAARGLDIPEVGLVINYDIPRDPDDYIHRVGRTARAGRKGEAVS 473

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPL--EKIDIAQHNHARKNNPIPQKSTG 405
            V + D++ I AIE  + ++++    D  +L   +  E + +           I +    
Sbjct: 474 FVGQRDVQLIQAIENRVGRQMEAWAEDGVNLETRVIRESLKLVGEKKREAMLEIEEGREV 533

Query: 406 FDRRKKNYSS 415
             +RK+    
Sbjct: 534 GGKRKRGMKK 543


>gi|92081528|dbj|BAE93311.1| zinc finger protein [Ciona intestinalis]
          Length = 556

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 134/412 (32%), Positives = 213/412 (51%), Gaps = 18/412 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L   ++  V  AGY +PTP+Q  +IP++    D+   AQTG+GKTA+F+LP+LT
Sbjct: 110 TFEMANLQETILVNVQKAGYDRPTPVQKYSIPIINADRDLMACAQTGSGKTAAFLLPVLT 169

Query: 62  I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                       +  + P+ +I+ PTREL  Q+     K+ ++  +   ++ GG     Q
Sbjct: 170 KLVESGVKSSEFSEKKTPQAIIIGPTRELVNQIFLEARKFSRSTIIHPVVVYGGTSVGYQ 229

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----IT 171
            + +++G DVLI TPGR++D  NRG + + N+  +++DEADRMLDMGF   I+       
Sbjct: 230 IRAVQKGCDVLIATPGRLMDFINRGLIGLENVRFIILDEADRMLDMGFESEIRKLVSLPG 289

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 R TL+FSAT  DE+QK++ +FL+             A +     V +     K+
Sbjct: 290 MPQKNNRHTLMFSATFPDEIQKLAHDFLREDFLFLTVGRVGGACSDVTQTVISVEWKDKR 349

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL+ +    +T    ++F   K+    L   L ++ F   +IHG+  Q+ R + L +F
Sbjct: 350 SKLLELIADVNETKSRTLVFVETKRGADFLACVLCQEDFPTTSIHGDRLQQDREQALRDF 409

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K     ++VA+ +AARGLDIP V HV N+D+P   + Y+HRIGRTGR G  G+A T    
Sbjct: 410 KLAVCPILVATSVAARGLDIPKVEHVINYDMPREIDEYVHRIGRTGRCGNLGRATTFFDN 469

Query: 352 EDIK-HIDAIEKL---IEKKVDWLNGDLSSL----NPPLEKIDIAQHNHARK 395
           +  +  +  + K    + KK     G++ SL        +K D+ +    R+
Sbjct: 470 KKTQIWLAHLLKFFPRLNKKFQVGWGNVQSLLLVRISEQKKEDLVEKTFGRE 521


>gi|74177868|dbj|BAE39019.1| unnamed protein product [Mus musculus]
          Length = 595

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 101/376 (26%), Positives = 187/376 (49%), Gaps = 15/376 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     ++ +++  +LDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 163 TFQQLDQEYKINSRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 222

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L++   +      L++ PTRELA+Q+     K  +        +    I  +   
Sbjct: 223 PILMQLKQPTNKGFR--ALVISPTRELASQIHRELIKISEGTGFRIHMIHKAAIAAKKFG 280

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++    +    ++  N+E LV+DE+D++ + G   + +      
Sbjct: 281 PKSSKKFDILVTTPNRLIYLLKQDPPGIDLTNVEWLVVDESDKLFEDGKTGFREQLASIF 340

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT   ++++  +  L N   + +   +S  ET+E   +   ++  K
Sbjct: 341 LACTSPKVRRAMFSATFAYDVEQWCKLNLDNVVSVSIGARNSAVETVEQELLFVGSETGK 400

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +        ++F    +    L H L  +G +V  IH    Q+ R   + +
Sbjct: 401 LLAMRELVKKGFKPP--VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHS 458

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   
Sbjct: 459 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFT 518

Query: 351 KEDIKHIDAIEKLIEK 366
           ++D   + ++  +I++
Sbjct: 519 EDDKPLLRSVANVIQQ 534


>gi|26348749|dbj|BAC38014.1| unnamed protein product [Mus musculus]
          Length = 579

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 102/376 (27%), Positives = 188/376 (50%), Gaps = 15/376 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     ++ +++  +LDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 163 TFQQLDQEYKINSRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 222

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L++   +    R L++ PTRELA+Q+     K  +        +    I  +   
Sbjct: 223 PILMQLKQPTNKGF--RALVISPTRELASQIHRELIKISEGTGFRIHMIHKAAIAAKKFG 280

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++    +    ++  N+E LV+DE+D++ + G   + +      
Sbjct: 281 PKSSKKFDILVTTPNRLIYLLKQDPPGIDLTNVEWLVVDESDKLFEDGKTGFREQLASIF 340

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT   ++++  +  L N   + +   +S  ET+E   +   ++  K
Sbjct: 341 LACTSPKVRRAMFSATFAYDVEQWCKLNLDNVVSVSIGARNSAVETVEQELLFVGSETGK 400

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +        ++F    +    L H L  +G +V  IH    Q+ R   + +
Sbjct: 401 LLAMRELVKKGFKPP--VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHS 458

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   
Sbjct: 459 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFT 518

Query: 351 KEDIKHIDAIEKLIEK 366
           ++D   + ++  +I++
Sbjct: 519 EDDKPLLRSVANVIQQ 534


>gi|326803852|ref|YP_004321670.1| DEAD-box ATP-dependent RNA helicase CshB [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650666|gb|AEA00849.1| DEAD-box ATP-dependent RNA helicase CshB [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 449

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 129/458 (28%), Positives = 214/458 (46%), Gaps = 28/458 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D    P +  A+    + +PTPIQ K IP++     +   +QTG+GK+ +F+LP++
Sbjct: 1   MSFKDYHFQPFIEAALEKLAFKEPTPIQKKVIPVIQAGKSLVAQSQTGSGKSHAFLLPLI 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEK---YGKNYNLTVALLIGGIPFEAQNK 117
             L+         + +I  P+RELA Q+    ++                G      + +
Sbjct: 61  DQLKP----ANFTQLVITAPSRELADQLYQTAQQLVGDSDFDFHIERAYGGTDTKRQKER 116

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              +   V+I TPGR+LD    G + ++ +E  V+DEAD  LDMGF+  +  I S +P  
Sbjct: 117 LENQDPQVVIGTPGRLLDLVTEGSINVHKVEHFVVDEADMTLDMGFLHTVDQIASRMPDD 176

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            +  +FSAT+ ++L+     +L++P+ I+V      + TI +  +    +         +
Sbjct: 177 LKIYVFSATIPEKLRPFLRKYLEHPEWIQVANEKLISPTITNILLPLRGRSKDDL---LK 233

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              +       +IF N  + V  L   L++ G SV  +HG++D R R +++   +    Q
Sbjct: 234 QALTMGEPYLVLIFANTIEEVDQLYLKLKQWGLSVAKLHGDLDSRERRRVMRQIQHLDYQ 293

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N+D+P   E +IHR+GRTGR G  G A T    +  K I
Sbjct: 294 YVVATDLAARGIDIEGVSHVVNYDIPKELEFFIHRVGRTGRQGMKGIALTFYHPDQEKAI 353

Query: 358 DAIEK---LIEKKVDWLNGDLSSLNPPLEK-IDIAQH------------NHARKNNPIPQ 401
             +E      E K D  NG    +    E+ +   +H            N  +K    P 
Sbjct: 354 RWLEDRGIHFEVK-DIKNGQWVEVKDHKERQLRKDRHQEETDHVVKGMINRNKKRKVKPG 412

Query: 402 KSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQEND 439
                DR+ K Y   K +   +++ +  K +Q+ + N 
Sbjct: 413 YKKKLDRQIKAYKRDKYNKKQRQTAR-QKRKQNKENNR 449


>gi|242047398|ref|XP_002461445.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
 gi|241924822|gb|EER97966.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
          Length = 602

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 116/408 (28%), Positives = 202/408 (49%), Gaps = 5/408 (1%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           +SP++V  +   G  K  PIQ   +   +Q  D+ G A+TGTGKT +F +P++  +    
Sbjct: 93  ISPRIVEKLAARGITKLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDKILSHN 152

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
            +    R  +               +++ ++  L    + GG+P   Q + L  G D+++
Sbjct: 153 EKNGNGRNPLAIVLAPTRELARQVEKEFRESAPLDTLCVYGGVPINQQMRVLNYGVDIVV 212

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGRI+D   RG L ++ I+ +V+DEAD+ML +GF   ++ I   +P  RQ++LFSATM
Sbjct: 213 GTPGRIIDLLRRGVLNLSQIQFVVLDEADQMLAVGFDEDVEVIMEQLPQNRQSMLFSATM 272

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
              ++K+S  +L +P  I++    S  +  E   + + A  +     +   L  +     
Sbjct: 273 PSWIRKISNKYLNDPVIIDL-VGDSDQKLPEGISLYSIASDNFGKQSILGPLIKEHANGG 331

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
             I   Q K   +    +  + +   A+HG+I Q  R + LS F++G   ++VA+D+AAR
Sbjct: 332 KCIVFTQTKRDADRLAYVMGRSYPCQALHGDISQNQRERTLSGFRDGRFNILVATDVAAR 391

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           GLDIP+V  V ++++PN +E ++HR GRT RAG+ G A  +   E  + +  IE+ I  +
Sbjct: 392 GLDIPNVDLVVHYEIPNTSELFVHRSGRTARAGKKGSAILIYTYEQTRAVRVIEQDIGCR 451

Query: 368 VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
              L      +    E  D+       ++     + TG    ++ Y  
Sbjct: 452 FTELP----KMPVSDEAADMFNVTRDTRSRSAGSRRTGGPFSREGYGG 495


>gi|242822575|ref|XP_002487915.1| eukaryotic translation initiation factor 4, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218712836|gb|EED12261.1| eukaryotic translation initiation factor 4, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 397

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P+++  V   G+ +P+ IQ + I  V++ +DV   AQ+GTGKTA+F +  L 
Sbjct: 25  SFDAMNLKPELLRGVYAYGFERPSAIQQRAIMPVIKGNDVIAQAQSGTGKTATFSISALQ 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++  + LIL PTRELA Q+       G   ++     IGG       K L+ 
Sbjct: 85  KIDSS---LKACQALILAPTRELAQQIQKVVVAIGDFMSIECHACIGGTNVREDMKALQD 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P + Q +
Sbjct: 142 GPQVVVGTPGRVQDMIQRRVLRTDNIKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVV 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 202 LLSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A
Sbjct: 260 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIA 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 320 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 379

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 380 QFYNTQIEEMPMNVADL 396


>gi|121704948|ref|XP_001270737.1| DEAD/DEAH box RNA helicase, putative [Aspergillus clavatus NRRL 1]
 gi|119398883|gb|EAW09311.1| DEAD/DEAH box RNA helicase, putative [Aspergillus clavatus NRRL 1]
          Length = 584

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 112/405 (27%), Positives = 166/405 (40%), Gaps = 26/405 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D GL P +   +   GY  PTPIQ  +IP VL  HD+  IAQTG+GKTA+F++P L+
Sbjct: 130 NFDDAGLHPFMRENIRLCGYEIPTPIQAYSIPAVLTGHDLIAIAQTGSGKTAAFLIPALS 189

Query: 62  ILEKGRARVRMPRTL-------------------ILEPTRELAAQVADNFEKYGKNYNLT 102
            L     ++  PR                     I+ PTREL+ Q+ D   +      L 
Sbjct: 190 QLMGKAKKLAAPRPNLANGFNPSVDAVRAEPLVLIVAPTRELSTQIFDEARRLCYRSMLR 249

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
             ++ GG P   Q ++L++G D+LI TPGR+LD  ++  +L  +     I +    L + 
Sbjct: 250 PCVVYGGAPSREQREELQKGCDILIGTPGRLLDFMDKPHVLSLSRVKYTIIDEADELLLS 309

Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
                      V    +       M           L      E +              
Sbjct: 310 DWESDFTKIMSVEDVNEDADHRYMMFSATFNKDCRRLARKFLAEDHVRIRIGRPGSTHVN 369

Query: 223 ATYAQYSKKCALLQQLLQS---QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                   +  L +Q L            +IF N K     L   L   G    +IH + 
Sbjct: 370 VDQNIIFAEDHLKKQCLYDLLLAMPPSRTLIFVNTKTQADFLDDFLYNMGLPSTSIHSDR 429

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPN----RAENYIHRIGR 335
            QR R   L  F+     ++VA+ ++ARGLDI +V HV NFD+P+        YIHRIGR
Sbjct: 430 TQREREDALRAFRTARCPILVATGVSARGLDIKNVMHVINFDLPSVMHGGITEYIHRIGR 489

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNP 380
           T R G  G A +     + +    + K++ +    +   L S  P
Sbjct: 490 TARIGNEGLATSFYNDRNAELAPDLVKILIESAQKIPDFLESYKP 534


>gi|15615910|ref|NP_244214.1| RNA helicase [Bacillus halodurans C-125]
 gi|10175971|dbj|BAB07067.1| RNA helicase [Bacillus halodurans C-125]
          Length = 389

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 102/372 (27%), Positives = 180/372 (48%), Gaps = 8/372 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F    +    + A+ + G  +PT IQ + IP  L   ++   +QTGTGKT +++LPM
Sbjct: 1   MNQFQQWPIGEPFLEALTNQGITEPTEIQQQVIPEALDGQNLIVHSQTGTGKTLAYLLPM 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK- 118
           LT  E+   + +    LIL PT+ELA Q+ +  ++     ++TV  LIGG   + Q +K 
Sbjct: 61  LTKTEELPEQTQA---LILAPTQELAMQIVEVAKQLTATTSITVLPLIGGANIKRQVEKL 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            ++   V + TPGRIL+     KL + +++++V+DEADRM++           +      
Sbjct: 118 KKKKPHVAVGTPGRILELMEMKKLKVPHVKMIVVDEADRMMEETSAWNAFENVAKRIGNE 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
              LF    +          +           +      +           ++   + + 
Sbjct: 178 AQYLFV---SATFASRFTELVAPYVPFIETVSAQGNTVQQAVNHWFIRCEKRERMDVVRK 234

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L   + ++ GI+F N+ ++V      L+ +G    A+  +  ++ R + L   K    Q+
Sbjct: 235 LIHHENIQRGIVFVNRLEHVAETTAKLQFKGIKAVALSSDQTKQERERALHQLKTSEAQV 294

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ASD+AARGLD+ DV HV   + P  +E Y+HR GRTGR G+ G   TL ++ ++  ++
Sbjct: 295 LIASDVAARGLDVDDVSHVIQLEPPTTSEAYVHRAGRTGRMGKEGTVITLTSEREMYKLE 354

Query: 359 AIEKLIEKKVDW 370
            IEK +    + 
Sbjct: 355 KIEKGLNLSFEE 366


>gi|327305867|ref|XP_003237625.1| DEAD box helicase [Trichophyton rubrum CBS 118892]
 gi|326460623|gb|EGD86076.1| DEAD box helicase [Trichophyton rubrum CBS 118892]
          Length = 594

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 105/406 (25%), Positives = 160/406 (39%), Gaps = 26/406 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL P ++  +   GY+ PTP+Q   IP VL  HD+  +AQTG+GKTA+F++P+L+
Sbjct: 128 SFEDAGLHPIMLNNIKLCGYLVPTPVQAYCIPAVLTGHDLIAVAQTGSGKTAAFLIPVLS 187

Query: 62  ILEKGRARVRMPRTL-------------------ILEPTRELAAQVADNFEKYGKNYNLT 102
            L     ++  PR                     I+ PTRELA Q+ D   +      L 
Sbjct: 188 KLMGKAKKLAAPRPDLGNGFNESLDAVRAEPLVLIVVPTRELATQIFDEARRLCYRSMLR 247

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
             ++ GG P   Q  +L++G D+LI TPGR++D   +  +L        I +    L   
Sbjct: 248 PCVIYGGGPSRDQRIELQKGCDILIATPGRLIDFMEKPNILSLCRVRYTIIDEADELLKS 307

Query: 163 FIPYIQNIT---SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
                         V           + T                           T  +
Sbjct: 308 DWEVEFTKILAGGDVNEDADHRYMMFSATFNKGCRQVARKFLANDYVRIRIGRVGSTHLN 367

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                              L         I+F N K     +   L   G    +IH + 
Sbjct: 368 VTQQLVWAEENMKKKCLYDLLMAMPPSRTIVFVNNKTQADLIDDFLFNMGLPSTSIHSDR 427

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPN----RAENYIHRIGR 335
            QR R   +  FK     +++A+ ++ARGLDI +V HV N+D+P+      + YIHRIGR
Sbjct: 428 TQREREDAIRAFKTAKSPILIATAVSARGLDIKNVMHVVNYDLPSVNHGGIDEYIHRIGR 487

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           T R G  G A +    ++      + K++ +    +   L S  PP
Sbjct: 488 TARIGNPGLATSFYNDKNSDIASDLVKILVESKQVIPDFLQSEVPP 533


>gi|315637556|ref|ZP_07892763.1| ATP-independent RNA helicase DbpA [Arcobacter butzleri JV22]
 gi|315478147|gb|EFU68873.1| ATP-independent RNA helicase DbpA [Arcobacter butzleri JV22]
          Length = 454

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 195/371 (52%), Gaps = 10/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L LS + +  +    Y   T IQ KTIP  LQ  D+   A+TG+GKT +F LP++
Sbjct: 1   MQFSELNLSKEFLQNLDSLEYKTLTLIQEKTIPDALQNKDLIAKAKTGSGKTVAFCLPIV 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L+    +++    LIL PTRELA Q+A N     ++ +    L +  G+PF+ Q   L
Sbjct: 61  NKLKAKEFKIQ---ALILAPTRELANQIAQNLRNLSRHIHNVKVLTLCGGVPFKPQVVSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  A +++ TPGR+L H     + + NI   V+DEAD+MLDMGF   I  I   +P  RQ
Sbjct: 118 QHNAHIVVATPGRVLKHIKEKNINLENINTFVLDEADKMLDMGFYDDIMEIIENLPKNRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT    ++  + N L+NP   E++      E         Y     +   L   L
Sbjct: 178 TMLFSATYEKNIEIFASNILKNPIYKEISD-----EKEILINQKFYEVTPSEKTALIPAL 232

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S +  K  +IFCN K     L   L   G  +  +H +++Q+ R + +  F   +  ++
Sbjct: 233 ISHNQAKTTLIFCNMKITCEKLADDLYDLGLDILTLHSDLEQKQRDETMVLFSNKSYPIL 292

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGL I DV  V N+D+    + + HRIGRT RAG+ G A +L  + +I   + 
Sbjct: 293 IATDVASRGLHIDDVDLVINYDLSLDEKIHTHRIGRTARAGKGGLAISLFTENEIDKFEI 352

Query: 360 I-EKLIEKKVD 369
           I EK    K++
Sbjct: 353 IKEKFNNIKIE 363


>gi|291438689|ref|ZP_06578079.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291341584|gb|EFE68540.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 689

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 145/438 (33%), Positives = 219/438 (50%), Gaps = 17/438 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L
Sbjct: 105 LTFADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTL 164

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  GR     PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LE
Sbjct: 165 ATLAGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALE 224

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+ D  NRG   + N++I V+DEAD+M D+GF+P +  +   VP   Q 
Sbjct: 225 RGVDILVATPGRLRDIINRGACSLENVQIAVLDEADQMSDLGFLPEVTELLDQVPAGGQR 284

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM +E++ + + +L +P   EV+       T+ H  +       K          
Sbjct: 285 MLFSATMENEIKTLVDRYLNDPVSHEVDAAQGAVTTMSHHILVV-----KPKDKAPVTAA 339

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   +     +   L   G    A+HG + Q +R + L++FK+G + ++V
Sbjct: 340 IASRKGRTIIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLV 399

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L      +    I
Sbjct: 400 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLALPHQRRQ---I 456

Query: 361 EKLIEKK-VDWLNGDL---SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            +L+E   VD +   +   ++ +P L +I       AR    +  +S G   ++      
Sbjct: 457 FRLMEDAGVDAMRHIIQGGAAFDPELAEI-----TGARSMTEVQAESAGNAAQQAEREVA 511

Query: 417 KSHIPLKESEKISKLQQD 434
           +    L+ +++ +   +D
Sbjct: 512 QLTKELERAQRRAAELRD 529


>gi|239930343|ref|ZP_04687296.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 612

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 145/438 (33%), Positives = 219/438 (50%), Gaps = 17/438 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L
Sbjct: 28  LTFADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTL 87

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  GR     PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LE
Sbjct: 88  ATLAGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALE 147

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+ D  NRG   + N++I V+DEAD+M D+GF+P +  +   VP   Q 
Sbjct: 148 RGVDILVATPGRLRDIINRGACSLENVQIAVLDEADQMSDLGFLPEVTELLDQVPAGGQR 207

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM +E++ + + +L +P   EV+       T+ H  +       K          
Sbjct: 208 MLFSATMENEIKTLVDRYLNDPVSHEVDAAQGAVTTMSHHILVV-----KPKDKAPVTAA 262

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   +     +   L   G    A+HG + Q +R + L++FK+G + ++V
Sbjct: 263 IASRKGRTIIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLV 322

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L      +    I
Sbjct: 323 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLALPHQRRQ---I 379

Query: 361 EKLIEKK-VDWLNGDL---SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            +L+E   VD +   +   ++ +P L +I       AR    +  +S G   ++      
Sbjct: 380 FRLMEDAGVDAMRHIIQGGAAFDPELAEI-----TGARSMTEVQAESAGNAAQQAEREVA 434

Query: 417 KSHIPLKESEKISKLQQD 434
           +    L+ +++ +   +D
Sbjct: 435 QLTKELERAQRRAAELRD 452


>gi|322698059|gb|EFY89832.1| ATP-dependent RNA helicase HAS1 [Metarhizium acridum CQMa 102]
          Length = 581

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 105/364 (28%), Positives = 175/364 (48%), Gaps = 5/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS K + A+ + G+ K T IQ   IP +L   DV G A+TG+GKT +F++P + I
Sbjct: 106 FDQLKLSEKTMKAINEMGFTKMTAIQRTAIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEI 165

Query: 63  LEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   R + R    +I+  PTRELA Q+     +  ++++ T  ++IGG   +A+ +KL +
Sbjct: 166 LSALRFKPRNGTGVIVVSPTRELALQIFGVARELMQHHSQTYGIVIGGANRKAEAEKLSK 225

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G ++LI TPGR+LDH      +  N++ LVIDEADR+L++GF   I+ I  ++    +  
Sbjct: 226 GVNLLIATPGRLLDHLLNTPFVFKNLKSLVIDEADRILEVGFEDEIRQIVKVLSNDDRQT 285

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ- 240
           +  +       +        P  + +N       +        Y         +      
Sbjct: 286 MLFSATQTTKVEDLARISLRPGPLYINVDEEKQFSTVDGLEQGYVLCDADKRFILLFSFL 345

Query: 241 --SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +   +V      L      V  +HG   Q+ R      F      +
Sbjct: 346 KRMKEKKKKVIVFFSSCNSVKYYAELLNYIDCPVLDLHGKQKQQKRTNTFFEFSNAEHGI 405

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  FD P+   +YIHR+GRT R A   G++   +   ++  +
Sbjct: 406 LICTDVAARGLDIPAVDFIVQFDPPDNTRDYIHRVGRTARGANTKGRSLLFLQPNEVGFL 465

Query: 358 DAIE 361
             ++
Sbjct: 466 SHLK 469


>gi|185132644|ref|NP_001117993.1| myc-regulated DEAD box protein [Oncorhynchus mykiss]
 gi|52547136|gb|AAU81664.1| myc-regulated DEAD box protein [Oncorhynchus mykiss]
          Length = 663

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 111/391 (28%), Positives = 193/391 (49%), Gaps = 7/391 (1%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP- 58
            FA L   +S   +  V + G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 170 SFASLAPLVSENTLKGVKEMGFEHMTEIQHKSIQPLLEGRDILAAAKTGSGKTLAFLIPS 229

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  I +           +IL PTRELA Q     ++   ++  T  L++GG    A+ ++
Sbjct: 230 IELIYKLKFMPRNGTGVVILSPTRELAMQTYGVMKELMTHHVHTFGLIMGGSNRTAEAQR 289

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++L+ TPGR +    N    +  N++ L+IDEADR+L++GF   ++ I  L+P  
Sbjct: 290 LANGVNILVATPGRLLDHLQNAAGFMYKNLQCLIIDEADRILEVGFEEELKQIIKLLPKR 349

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+          +    T++          S+K  +L  
Sbjct: 350 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDNKDNATVDGLEQGYVVCPSEKRFMLLF 409

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 410 TFLKKNRKKKLMVFFSSCMSVKFHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNADSG 469

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH-GKAFTLVAKEDIKH 356
           +++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R     G A  ++  E++  
Sbjct: 470 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGINGIGHALLILRPEELGF 529

Query: 357 IDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
           +  ++  K+   + ++    +S +   L K+
Sbjct: 530 LRFLKQAKVPLSEFEFSWAKISDIQGQLNKL 560


>gi|254387115|ref|ZP_05002388.1| DEAD-box RNA helicase [Streptomyces sp. Mg1]
 gi|194345933|gb|EDX26899.1| DEAD-box RNA helicase [Streptomyces sp. Mg1]
          Length = 524

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 123/358 (34%), Positives = 188/358 (52%), Gaps = 4/358 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ +   ++  +   G  +P PIQ  T+P  L   D+ G  +TG+GKT +F L +L  
Sbjct: 15  FEDMDMPEALLKTLAAQGVTEPFPIQAATLPNSLAGRDLLGRGRTGSGKTLAFGLALLAR 74

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA+ + P  L+L PTRELA QV D    Y  + NL +A ++GG+    Q+  L RG
Sbjct: 75  TAGHRAQPKQPLALVLVPTRELAQQVTDALAPYATSVNLRIATVVGGMSINRQSGALRRG 134

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+VL+ TPGR+ D  +RG   ++ + I V+DEAD+M DMGF+P +  +   V    QT+L
Sbjct: 135 AEVLVATPGRLKDLIDRGDADLSQVAITVLDEADQMTDMGFMPQVTALLKQVRPEGQTML 194

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + K+ + FL +P    V+  +    T+EH  +    +  KK    +      
Sbjct: 195 FSATLDKNIDKLVKMFLHDPVGHSVDPSAGAVTTMEHHVLYVMDETDKKAVATR----IA 250

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F + K+ V  +   L   G     +HG   Q  R + L  FK G +  +VA+
Sbjct: 251 ARDGRVIMFVDTKRGVDRMVKKLLADGVRASGLHGGRSQPQRNRTLDWFKTGEVTALVAT 310

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++AARG+ I D+  V N D P   ++Y+HR GRT RAG  G   TLV  +  + +  +
Sbjct: 311 NVAARGIHIDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPDQRREMTRL 368


>gi|156375300|ref|XP_001630019.1| predicted protein [Nematostella vectensis]
 gi|156217032|gb|EDO37956.1| predicted protein [Nematostella vectensis]
          Length = 411

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 111/368 (30%), Positives = 175/368 (47%), Gaps = 3/368 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L P++   +    +  PTPIQ++++  V+   D+ G+A+TG+GKT ++ LP+  
Sbjct: 41  SFHDLNLPPELSTYLAKKNFQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSLPLCM 100

Query: 62  --ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +        P  LIL PTREL  QV  N  +           + GG+P   Q   L
Sbjct: 101 LLRTKAPSNPGDTPVALILTPTRELMQQVFMNVSEMLDVIRCPGNPVCGGVPVSTQTIAL 160

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GADV++ TPGR+LD   RG L ++ I  LV+DEADRML MG    ++ I  L   T +
Sbjct: 161 REGADVVVATPGRLLDLCKRGALCLDKITYLVMDEADRMLGMGMEEQLRKIVGLATGTSR 220

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
                       + +                                 Y  +        
Sbjct: 221 ARQTLLWSATLPESLERLARSAVLNPITIQVGPGGLIAPSVQQNVVFLYHYQKPQKLLET 280

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    I+F +  +NV  +   L+++ F    +H    Q  R K++  F++G + ++
Sbjct: 281 LRTTPYPPVIVFTSSIQNVDYVTELLKQEQFHASGLHSEKPQDYRFKLVKAFRDGKVDIL 340

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGLD P+V HV N+D+P+  E YIHR GRTGR G HG A + +   D K  + 
Sbjct: 341 VATDVASRGLDFPEVTHVINYDLPDTIECYIHRCGRTGRIGHHGIATSFLTL-DCKIAEE 399

Query: 360 IEKLIEKK 367
           +++++E++
Sbjct: 400 LKEMLERE 407


>gi|47459115|ref|YP_015977.1| DEAD-box ATP-dependent RNA helicase [Mycoplasma mobile 163K]
 gi|47458444|gb|AAT27766.1| DEAD-box ATP-dependent RNA helicase [Mycoplasma mobile 163K]
          Length = 557

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 140/475 (29%), Positives = 246/475 (51%), Gaps = 31/475 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L +  K++  +   G+  PT IQ   I    +  ++ G AQTGTGKTA+F + ++
Sbjct: 1   MKFQELDIDDKIINNLKKIGFEAPTQIQELVISTANKNQNILGCAQTGTGKTAAFGVSII 60

Query: 61  TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTV-ALLIGGIPFEAQNK 117
             + K +         TLIL PTREL+ QV +N + +  N  +T  A+  G    E+   
Sbjct: 61  NKILKNKKNNAKSSLTTLILVPTRELSVQVNENIKLFSSNLPITSLAIYGGMRNRESHFS 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             +RG D+++ TPGR+LD+   GKL ++ ++ +V+DEAD M+DMGFI  ++ I       
Sbjct: 121 IFKRGLDIIVATPGRLLDYIKSGKLSLSQVDTVVLDEADLMVDMGFIDDVKEILKRTKEE 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +Q +LFSATM   +  + E+F+   + I+  + +   + +++     Y   S K   L Q
Sbjct: 181 KQVMLFSATMPKAIMNLVEDFMGKFELIQTESFA---KPLQNIEHLAYFYTSSKPVELLQ 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  ++ + + I+F   K++  N+ + L K    + ++HG+  Q SR +IL +FKEG IQ
Sbjct: 238 QMLKEEKIYSAIVFVKTKRDADNVENLLSKMKLKIDSLHGDKTQASRSRILRSFKEGKIQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+D+A+RG+DI D+ HVFN ++P   E Y HR+GRTGRA + GKA +  +K D   +
Sbjct: 298 ILVATDVASRGIDIDDISHVFNLNIPEDPEIYTHRVGRTGRASKVGKAISFFSKRDFFLL 357

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH------------------------A 393
             +EK I+ ++      +      +    +  HN                         +
Sbjct: 358 AKVEKEIKMEIPKKQIQIIEDVIEISDFTLNIHNKSERSSDRRSDRSSYRRDSRSSFSSS 417

Query: 394 RKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
              +  P+  +G  RR+++++S+++    K +EK  + ++   ++      F   
Sbjct: 418 SDRSRRPENKSGNFRRERSFNSERNFDSSK-NEKPIRSERSSSDSPRRERSFSSE 471


>gi|114563875|ref|YP_751389.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114335168|gb|ABI72550.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 428

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 152/433 (35%), Positives = 235/433 (54%), Gaps = 21/433 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+ GL   ++  + +  Y++PTPIQ +TIP  L   D+   A TG+GKTA+F LP+L 
Sbjct: 9   TFAEFGLHTPLLARLTELKYLQPTPIQAETIPSTLTGKDLLAGANTGSGKTAAFALPILH 68

Query: 62  ILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQ 115
            L   R    A+      L+L PTRELA QVAD+F+ Y  + N  + V    GG+    Q
Sbjct: 69  QLVSRRAATSAKGNFVSALVLVPTRELAKQVADSFKSYAVHLNGDIKVVAAFGGVSVNTQ 128

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  GADV++ TPGR+LD  +   L ++ +  LV+DEADRML +GF   +  + +L+P
Sbjct: 129 MLALRGGADVVVATPGRLLDLVSSNALKLSQVTTLVLDEADRMLSLGFTEELTQVLNLLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +QTLLFSAT  DE++++++  L NP  I++ +  ++        V    + +    LL
Sbjct: 189 KQKQTLLFSATFPDEVRQLTQALLVNPLEIQLQSAEASTLVQRVMTVNREKKTALLAHLL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           QQ        +  +IF   K +  +L   L K+G +    HG+  Q +R ++L  FK G 
Sbjct: 249 QQHQW-----RQVLIFVGAKNSCNHLAQKLAKRGITAEVFHGDKAQGARSRVLEGFKAGD 303

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           IQ+++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G A TL++ ++  
Sbjct: 304 IQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLALTLLSHDEYH 363

Query: 356 HIDAIEK--LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           H   IEK   I  + + +NG         E  D+   +   +  P+ +      +++K  
Sbjct: 364 HFSVIEKKNQIRLEREQVNG--------FEADDVVPESVLEQPKPMAKPEGSGKKKRKKL 415

Query: 414 SSQKSHIPLKESE 426
           SS    I  K+ +
Sbjct: 416 SSVNVDIWAKKPD 428


>gi|293414669|ref|ZP_06657318.1| ATP-independent RNA helicase DbpA [Escherichia coli B185]
 gi|291434727|gb|EFF07700.1| ATP-independent RNA helicase DbpA [Escherichia coli B185]
          Length = 457

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 201/370 (54%), Gaps = 9/370 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIDQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+  ++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSACVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDW 370
             +++ K++W
Sbjct: 357 SDMLQIKLNW 366


>gi|212546709|ref|XP_002153508.1| eukaryotic translation initiation factor 4, putative [Penicillium
           marneffei ATCC 18224]
 gi|210065028|gb|EEA19123.1| eukaryotic translation initiation factor 4, putative [Penicillium
           marneffei ATCC 18224]
          Length = 397

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P+++  V   G+ +P+ IQ + I  V++ +DV   AQ+GTGKTA+F +  L 
Sbjct: 25  SFDAMNLKPELLRGVYAYGFERPSAIQQRAIMPVIKGNDVIAQAQSGTGKTATFSISALQ 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++  + LIL PTRELA Q+       G   ++     IGG       K L+ 
Sbjct: 85  KIDGS---LKACQALILAPTRELAQQIQKVVVAIGDFMSIECHACIGGTNVREDMKALQD 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +NI++ V+DEAD ML  GF   I +I  L+P + Q +
Sbjct: 142 GPQVVVGTPGRVQDMIQRRVLRTDNIKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVV 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 202 LLSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A
Sbjct: 260 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIA 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 320 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 379

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 380 QFYNTQIEEMPMNVADL 396


>gi|73539745|ref|YP_294265.1| ATP-dependent RNA helicase DbpA [Ralstonia eutropha JMP134]
 gi|72117158|gb|AAZ59421.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Ralstonia eutropha JMP134]
          Length = 474

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 143/406 (35%), Positives = 205/406 (50%), Gaps = 17/406 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ L L+P  +  +   GY + TPIQ  ++PL L  HD+   A+TG+GKTA+F L +L 
Sbjct: 18  DFSTLPLAPATLATLAQLGYDEMTPIQAASLPLTLAGHDLIAQAKTGSGKTAAFALALLH 77

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+    R    + ++L PTRELA QV     +  +       L +  G P   Q   L 
Sbjct: 78  RLDA---RRFDVQAMVLCPTRELADQVTQEIRRLARAEENVKVLTLCGGSPMRPQVDSLV 134

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGRILDH +RG L ++ I  LV+DEADRMLDMGF   I  + S  P  RQT
Sbjct: 135 HGAHVVVGTPGRILDHIDRGSLELSAINTLVLDEADRMLDMGFFDDISYVASRCPRERQT 194

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT    + K+S+ F     R       +            Y     +       L 
Sbjct: 195 MLFSATYPAGIDKLSQKF----LRKPQEVKLAEKHDSSSIRQYFYEVDESERLSAVGRLL 250

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + + FCN K    +L   L  QGF   A+HG+++QR R ++L  F  G+  ++V
Sbjct: 251 DHFRPASTLAFCNTKARCRDLVDLLRGQGFQALALHGDLEQRDRDQVLVQFANGSCSVLV 310

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N ++    E +IHRIGRTGRAG  G AF+LV+ +++  +  +
Sbjct: 311 ATDVAARGLDIAQLEAVINVEITPDPEVHIHRIGRTGRAGEEGHAFSLVSMDEMGRVGNL 370

Query: 361 EKLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           E+    + +W             L PP+  +   Q    RK    P
Sbjct: 371 EQHHGGEFEWHPLAELRAASTERLLPPMVTL---QMLGGRKEKIRP 413


>gi|23099394|ref|NP_692860.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831]
 gi|22777623|dbj|BAC13895.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 432

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 126/390 (32%), Positives = 190/390 (48%), Gaps = 13/390 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DL L+P V   +    +  PT IQ K IP +++   V G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFEDLQLNPIVNDVIEQLKFKNPTEIQEKVIPAIIKGDSVVGQSRTGSGKTHAFLLPLF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG----KNYNLTVALLIGGIPFEAQN 116
             LE  +  V+     I  PTRELA Q+            K       LL+GG   +   
Sbjct: 61  HGLESDKKEVQFV---ITAPTRELATQLYGEVRNIITLADKTKEWNAKLLVGGTDKQKMT 117

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +KL+    +++ TPGRILD    G L +   +  V+DEAD MLD+GFI  +  +      
Sbjct: 118 EKLKTPPHIIVGTPGRILDLVKSGALSIYTAKSFVVDEADLMLDLGFIEEVDQLLVRSKQ 177

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q L+FSAT+   LQ   + +++NP  +++N   S  +         +   ++    + 
Sbjct: 178 DIQLLVFSATIPQRLQHFFKKYIKNPLNVKINEHFSPEKMDHRLIRKKHRNEAEIIWEIS 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q           +IF N K+    L   L + G  V  IHG +  R R ++L   +    
Sbjct: 238 Q----SIHPYLALIFTNGKQQANELADQLLEYGLEVGVIHGGLTPRERKRVLKEIQNLRY 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VA+DLAARG+DI  V HV N  +P     YIHR+GRT RAG  G A ++    D+  
Sbjct: 294 QYVVATDLAARGIDIKGVSHVINAQIPKEESFYIHRVGRTARAGLEGTAISIYDDNDLSL 353

Query: 357 IDAIEK--LIEKKVDWLNGDLSSLNPPLEK 384
           I  +E+  LI + V+  NG+  +     E+
Sbjct: 354 IQRLEQKGLIFEFVEVKNGEWKTDPSWNER 383


>gi|289616156|emb|CBI57255.1| unnamed protein product [Sordaria macrospora]
          Length = 934

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 140/501 (27%), Positives = 244/501 (48%), Gaps = 57/501 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ K IPL+L+R DV G+A+TG+GKTA+FV+PM+  
Sbjct: 102 FQAMGLNAHLLRAITRKGFSVPTPIQRKAIPLILERKDVVGMARTGSGKTAAFVIPMIER 161

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    RV   R LI+ P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 162 LKGHSPRVGA-RALIMSPSRELALQTLKVVKELGRGTDLKTVLLVGGDSLEEQFGMMAAN 220

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++++ +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 221 PDIIIATPGRFLHLKVEMSLSLSSVKYVVFDEADRLFEMGFATELTEILHALPPSRQTLL 280

Query: 183 FSATMTDELQKVSENFLQNP--------------------------------KRIEVNTP 210
           FSAT+   L + +   LQ P                                  +     
Sbjct: 281 FSATLPSSLVEFARAGLQEPSLVRLDAETKVSPDLESAFFAVKGGEKEGALLHILHDVIK 340

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
                       +   Q  K+    +   + + T  + IIF   K +V  + + L+  GF
Sbjct: 341 VPLGAPEGTREESDELQAKKRKREYRPNPKEKPTEYSTIIFTATKHHVEYIQNLLKLAGF 400

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           +V  ++G++DQ +R+  + NF+ G   ++V +D+AARG+D+P + +V N+D P++ + ++
Sbjct: 401 AVSYVYGSLDQTARLIQVDNFRRGRTHILVVTDVAARGIDMPALANVINYDFPSQPKIFV 460

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV---------------------- 368
           HR+GRT RAG+ G A+ LV + D+ ++  ++  + +K+                      
Sbjct: 461 HRVGRTARAGQRGWAYGLVRQSDLPYLLDLQLFLGRKLIIGHEQKNPSFAADVVVGTLKR 520

Query: 369 DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKI 428
           + ++ ++  +   L+  + A  N  +      +K     R   +  S K    + +S+  
Sbjct: 521 EGVDVNIEWVEKALK--ESADLNALKGVAAKAEKLYMKTRNSASSQSAKRAREVAQSKGW 578

Query: 429 SKLQQDIQENDADSLGFRGNM 449
           ++L     E  A+S   R ++
Sbjct: 579 TQLHPLFGEEAAESQAARDDL 599


>gi|225856436|ref|YP_002737947.1| ATP-dependent RNA helicase [Streptococcus pneumoniae P1031]
 gi|225725948|gb|ACO21800.1| ATP-dependent RNA helicase [Streptococcus pneumoniae P1031]
          Length = 447

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 201/452 (44%), Gaps = 43/452 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +   +  +
Sbjct: 61  QQLDEASDSVQAV---ITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIADSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T             
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  +    +
Sbjct: 237 --TQSMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL-------------------------IEKKVDWLNGDLSSL---------NPPLE 383
             +EKL                          EKK D L+ ++  L             +
Sbjct: 355 RELEKLGIKFSPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKKKKVKPGYKK 414

Query: 384 KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           KI  A     RK      ++ G   RK    +
Sbjct: 415 KIQWAVDEKRRKTKRAENRARGRAERKAKRQT 446


>gi|170768852|ref|ZP_02903305.1| ATP-independent RNA helicase DbpA [Escherichia albertii TW07627]
 gi|170122400|gb|EDS91331.1| ATP-independent RNA helicase DbpA [Escherichia albertii TW07627]
          Length = 457

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 131/383 (34%), Positives = 206/383 (53%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLANLNELGYLTMTPVQAAALPAILAGRDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     +   + L+L PTRELA QVA    +  +    T  L +  G PF  Q   L+
Sbjct: 64  HVDVT---LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGIQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVTLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     T E +       Y   ++    L + L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRNPLAIEIDTTEALPPIEQQFYETSAQGKIPLLKRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +  +L + G S  A+HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVYDALNEAGQSALALHGDLEQRERDQTLVRFSNGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + +
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIL 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W     SS   PLE
Sbjct: 357 SDMLQIKLNWQTPPASSAVVPLE 379


>gi|168260141|ref|ZP_02682114.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205350697|gb|EDZ37328.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 457

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 134/373 (35%), Positives = 213/373 (57%), Gaps = 9/373 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF AQ   L+
Sbjct: 64  RIDVTLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  +S    Q P RIE++T     + +       +   + +   L Q L 
Sbjct: 181 LLFSATWPEAIAAISGRVQQQPIRIEIDTV----DALPAIEQQFFETSAHEKISLLQTLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN KK+   +C +L   G S  A+HG+++QR R + L  F  G+ +++V
Sbjct: 237 SQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +  A E+ +  + +
Sbjct: 297 ATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANIL 356

Query: 361 EKLIEKKVDWLNG 373
            ++++ K++WLN 
Sbjct: 357 SEMLQLKLNWLNA 369


>gi|260774607|ref|ZP_05883519.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260610401|gb|EEX35608.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 408

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 134/406 (33%), Positives = 215/406 (52%), Gaps = 10/406 (2%)

Query: 1   MDFADLGLSPKVVCAV-LDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M F++L L+  ++ A+  +     PT IQ   IP++L   D+  +AQTG+GKT ++ LP+
Sbjct: 1   MTFSELNLASSLLSALPAEL--HTPTTIQQLAIPVILSGRDLLALAQTGSGKTFAYGLPL 58

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L             +TLI+ PTRELA QV+       K  ++ V  + GG+  + Q  +L
Sbjct: 59  LQKTLPM---TPHIQTLIIVPTRELATQVSQALGLIAKPMHIDVCPVCGGVDQQWQQDQL 115

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   +++ TPGR+LD   +  + +++++ LV+DEADR+L+MGF P +Q I + +P  +Q
Sbjct: 116 AQNPQLIVATPGRLLDLIEQQIINLSSLQHLVLDEADRLLEMGFWPDVQRIMAHLPAKKQ 175

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT+  EL++ +   L +P +I  N P+ T   IE            +  +     
Sbjct: 176 TLLFSATLLPELEEKALQPLNDPIKISANPPNQTVPEIEEQLYLVNKGSKAQVLIHLLKQ 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++F + + N   L   L K G  V A+HGN DQ  R +IL+ FK+  I+++
Sbjct: 236 HHWS---QVLVFISARDNADALAKKLLKAGIRVAALHGNKDQTEREQILTQFKQQKIEVL 292

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+DL ARG+ I  +  V NFD+P     YIHR+GRT RAG+ G A +LV   +   +DA
Sbjct: 293 IATDLLARGIHIEQLPVVINFDLPPSPAVYIHRVGRTARAGQTGLALSLVCHNENAILDA 352

Query: 360 IEKLIEKKVDWLN-GDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           I +L ++ +      D    + P   +   Q    + N    QK +
Sbjct: 353 IRQLTQRPLVLQTLADFPVTDQPATTMPKRQPRDKQANRRSAQKRS 398


>gi|310756760|gb|ADP20521.1| ATP-dependent RNA helicase DDX3X [Fukomys anselli]
          Length = 662

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 129/396 (32%), Positives = 206/396 (52%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 241 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 300

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 301 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 360

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 361 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 420

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 421 WVEEIDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLFHEGYACTSIHGDRSQR 478

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +     +      +  L+ +    +   L ++
Sbjct: 539 GLATSFFNDRNGNITKDLLDLLVEAKQEVPSWLENM 574


>gi|227537996|ref|ZP_03968045.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242072|gb|EEI92087.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 398

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 115/372 (30%), Positives = 185/372 (49%), Gaps = 6/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +L LS  +V  +      +PT IQ   IP +L+  DV  I+ TGTGKT +F LP+L
Sbjct: 1   MNFQELNLSKLLVEKLNTLQITEPTGIQKAVIPNILKGKDVLAISPTGTGKTEAFALPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
            +L +   +    +TL+L PTRELA Q          +      + I  G  +E Q  +L
Sbjct: 61  YLLTES--KQSEHKTLVLSPTRELAQQTYLRILNCTPSEVNISTISIFGGQSYEKQAAEL 118

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +++ TPGR+LD  ++  + ++  + +VIDEAD +L +GF+  +  I   +P  +Q
Sbjct: 119 STDPAIVVATPGRLLDLMDQKLIDLSAFKKVVIDEADELLQLGFMAALFRILGYLPSDKQ 178

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   EL+++    L  P R EV         I    +       K         
Sbjct: 179 TLLFSATFPKELEELVPKVLHQPFRFEVQNREPQQSQIHQYLLFVDKNDKKNLIKYL--- 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   +IF      V  +   L+K G +   ++G+  Q  R   + +FK      +
Sbjct: 236 IDHYKIDTALIFTRTTHGVDRIVSDLQKHGLTAQGLYGDKSQAVRTATVEDFKNRNFNFL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGL + D+ HV N+++P+ +E Y+HRIGRT R  R G  +T    ED  ++  
Sbjct: 296 VATDIASRGLHLDDLDHVINYEIPDTSEQYMHRIGRTARGIRDGYTYTFCDAEDNPNLIK 355

Query: 360 IEKLIEKKVDWL 371
           ++  ++K +  L
Sbjct: 356 LQIALKKNIPIL 367


>gi|326202886|ref|ZP_08192753.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325986963|gb|EGD47792.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 439

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 129/457 (28%), Positives = 219/457 (47%), Gaps = 24/457 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   +V A+       PT IQ K IP  L+  DV   + TGTGKT +++LP+   
Sbjct: 5   FEGMELDKTLVEALKKESITVPTDIQQKAIPEELKNRDVILHSSTGTGKTLAYLLPLFMK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL--LIGGIPFEAQNKKLE 120
           L   +  ++    LIL PT ELA QV    E   +N  +      +IG +    Q  KL+
Sbjct: 65  LSVDKKEMQA---LILVPTHELAIQVERQIELLSQNSEIKATSTPIIGDVNIMRQMDKLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ T GRIL+   + K+  + I+ ++IDEADR+LD   +  I+ +       RQ 
Sbjct: 122 LKPHIIVGTAGRILELIQKKKISAHTIKTIIIDEADRLLDDYNLDSIKAVIKTTLKERQI 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT++ +  + +   ++ P  IE  +     + IEH +        ++   + + L 
Sbjct: 182 VMCSATISKKTVERAMPLMKEPLIIESKSDMGVPDAIEHLYFVAEQ---REKIDVLRKLV 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  I F    +++      L         IHG+  +  R K + +FK G +QL++
Sbjct: 239 RMINPKKAIAFFANSEDIFVSEEKLRYHKLKAGGIHGSHIKSDRKKTMDDFKNGKLQLLI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDI DV H+FN ++P R+ +Y+HR+GRTGR G+ G A ++V +++I+ +   
Sbjct: 299 ASDIAARGLDIEDVTHIFNVNIPERSMDYLHRVGRTGRNGKPGVAISIVTEKEIEFMKKF 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EK ++ K+         +   +    I ++   R   P  +   G         S+  + 
Sbjct: 359 EKELKIKI---------IPKSMSNGKIVEYKKERSKRPAERSKYGSPAGAGAVKSKTGNF 409

Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
               ++   K   D +++D+   GF+     F  PKN
Sbjct: 410 KQNRTDDRKKTFGDKKKSDS---GFK----VFRRPKN 439


>gi|302692416|ref|XP_003035887.1| hypothetical protein SCHCODRAFT_65679 [Schizophyllum commune H4-8]
 gi|300109583|gb|EFJ00985.1| hypothetical protein SCHCODRAFT_65679 [Schizophyllum commune H4-8]
          Length = 620

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 126/392 (32%), Positives = 198/392 (50%), Gaps = 17/392 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ +   ++  +     + PTPIQI+ IP      D+ GIA TG+GKT +F LP++  
Sbjct: 185 FEDMKIPRGILDYLKSKRIIDPTPIQIQGIPTAFSGRDIIGIAFTGSGKTLAFCLPLIMF 244

Query: 63  -----LEKGRARVRMPRTLILEPTRELAAQVADNFEKY-------GKNYNLTVALLIGGI 110
                ++    R   P  +IL P+RELA Q  +N   +       G+   L   L IGGI
Sbjct: 245 ALEEEMKLPFVRGEGPVGVILCPSRELANQTYENVLAWCEALAKEGRYPQLNTLLCIGGI 304

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q   + +G  ++I TPGR++D   + +L  NN + + +DEADRM+D+GF   ++NI
Sbjct: 305 SMNDQAHVMSKGIHIVIATPGRLIDMLEKKRLTFNNCKYMCMDEADRMVDLGFEEDVRNI 364

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  +++  ++  L  P  I V    +         +       +
Sbjct: 365 MSYFKRQRQTLLFSATMPQKIRDFAQQSLIQPILINVGRAGAANLD----VLQVVEYVKQ 420

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    IIF   K  V ++   L  +G    AIHG+  Q  R   + +
Sbjct: 421 EAKMVYLLECLQKTPPPVIIFSENKNEVDDIQEYLLLKGVEAVAIHGSKSQEERQYAIKS 480

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   +MVAS +A++GLD  ++ HV  F +P   E+Y+H+IGRTGR+G+ G A T V 
Sbjct: 481 FKSGAKDVMVASGVASKGLDFNEIQHVIIFTMPKEIEDYVHQIGRTGRSGKTGIATTFVN 540

Query: 351 KED-IKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
                + +  ++ L+ +    +   L+S+  P
Sbjct: 541 MNTPEQTLLDLKYLLMEAGQKVPPFLASIEDP 572


>gi|291383932|ref|XP_002708524.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Oryctolagus
           cuniculus]
          Length = 872

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 125/446 (28%), Positives = 211/446 (47%), Gaps = 14/446 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P +  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +             LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +++  
Sbjct: 131 LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINN 190

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +            N+++LV+DEADR+LDMGF   +  I   +P  RQTL
Sbjct: 191 INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTL 250

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L+NP+ + V+   +   T             ++   +      
Sbjct: 251 LFSATQTKSVKDLARLSLKNPEYVWVHE-KAKYSTPATLEQNYIVCELQQKISVLYSFLR 309

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA--IHGNIDQRSRMKILSNFKEGTIQLM 299
               K  I+F +  K V  L     +    +    +HG   Q  RM++ + F      ++
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLFRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKKAAVL 369

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V  +D P  A  YIHR GRT R    G+A  ++   + K +  
Sbjct: 370 FATDIAARGLDFPAVNWVLQYDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEKGM-- 427

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +++L++KKV      ++    P + +D+      R  + + Q     +R ++ + S    
Sbjct: 428 VQQLLQKKVPVKEIKIN----PEKLMDV----QKRLESFLAQDRDLKERAQRCFVSYIRS 479

Query: 420 IPLKESEKISKLQQDIQENDADSLGF 445
           + L + +++  + +      A SLG 
Sbjct: 480 VYLMKDKEVFDVSKLPIPEYALSLGL 505


>gi|218689333|ref|YP_002397545.1| ATP-dependent RNA helicase DbpA [Escherichia coli ED1a]
 gi|218426897|emb|CAR07752.2| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           ED1a]
          Length = 457

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 210/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +  + T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +    ++ + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEINSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+  ++C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W     +S   PLE
Sbjct: 357 SDMLQIKLNWQTLPANSSIVPLE 379


>gi|205352662|ref|YP_002226463.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205272443|emb|CAR37330.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326627728|gb|EGE34071.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 457

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 135/382 (35%), Positives = 216/382 (56%), Gaps = 9/382 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF AQ   L+
Sbjct: 64  RIDVTLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  +S    Q P RIE++T     + +       +   + +   L Q L 
Sbjct: 181 LLFSATWPEAIAAISGRVQQQPIRIEIDTV----DALLAIEQQFFETSAHEKISLLQTLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN KK+   +C +L   G S  A+HG+++QR R + L  F  G+ +++V
Sbjct: 237 SQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  + N+++    E ++HRIGRT RAG  G A +  A E+ +  + +
Sbjct: 297 ATDVAARGLDIKSLELLVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANIL 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPL 382
            ++++ K++WLN      + PL
Sbjct: 357 SEMLQLKLNWLNAPARQPSLPL 378


>gi|149506414|ref|XP_001515366.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 39,
           partial [Ornithorhynchus anatinus]
          Length = 430

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 90/375 (24%), Positives = 156/375 (41%), Gaps = 3/375 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++  +LD G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRCILDCGFEHPSEVQFECIPQAILGVDLLCQAKSGMGKTAVFVLSTLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    ++               ++    F KY     + V      I  + +  +    
Sbjct: 106 LDPIDGQIAALIMCHTRELAFQISKEFQRFSKYMPKVKVAVFFGGLSIKKDEEVLQKNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L      ++ +    +  +     +Q I  L P ++Q ++
Sbjct: 166 HIVVGTPGRILALVRNKKLSLKYVKHFVLDECDKMLEQLTMRQDVQEIYHLTPHSKQCMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  E++ +   F+Q+P  I V+            F     +  K   L        
Sbjct: 226 FSATMNKEIRPLCRKFMQDPMEIFVDDEKKLTLHGLQQFYVHLKENEKNRKLFDL--LDA 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   +IH  + Q  R+     FKE   +++V +
Sbjct: 284 LEFNQVVIFVKSVQRCIALAQLLLEQNFPAISIHRGMVQEERLSRYQQFKEFESRILVTT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  +  Y+HR+ R GR G  G A + V  E D   +  I 
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSNTYLHRVARAGRFGTRGMAISFVTDEVDTLVLRDIL 403

Query: 362 KLIEKKVDWLNGDLS 376
           K  +  ++ L  ++ 
Sbjct: 404 KRFDIILEELPREMK 418


>gi|71031881|ref|XP_765582.1| DEAD box RNA helicase [Theileria parva strain Muguga]
 gi|68352539|gb|EAN33299.1| DEAD box RNA helicase, putative [Theileria parva]
          Length = 501

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 96/402 (23%), Positives = 170/402 (42%), Gaps = 30/402 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           M ++ L LSP ++  + + G+ KP+ IQ   +PL+L    ++   A+ G+GKTA+F L M
Sbjct: 99  MQWSQLPLSPDLLKGIQNMGFAKPSKIQQCALPLILGSCTNIIAQAKNGSGKTATFALAM 158

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +      V+      + PTRELA Q     +K G+   +   L +   P    N + 
Sbjct: 159 LSKVNVNVPLVQALC---ICPTRELATQNVQVIQKLGQFTQIKCFLGVPQCPRYEDNDQY 215

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V                +    + +L   +          P +  I +      Q
Sbjct: 216 HLY--VGTPGKTMDFLKKRIMNVTNVVMLVLDEADELINQQNNMGPQVLQIRNFFRGPVQ 273

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT +D +   +         I+V     T + I+  ++       K   L +  +
Sbjct: 274 IVLFSATFSDNVYNFATKIAPRAHVIQVKREQLTLDCIDQRYMICNDDEDKFNKLSE--I 331

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH---------GNIDQRSRMKILSN 290
            S   +   +IF N ++    L   +  QG +V  +           ++    R +I+  
Sbjct: 332 YSSMIVGQSVIFVNSRETAFKLSQRMRDQGHAVSLLCGTLGPSSGPNSMTPEIRDRIMKE 391

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNR-------------AENYIHRIGRTG 337
           FK+G  ++++ +D+ ARG+D+P V  V N+++P                E Y+HRIGRTG
Sbjct: 392 FKDGETKVLICTDVLARGIDVPQVTLVINYELPMSYSGAKTAELKSVCMETYLHRIGRTG 451

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           R G  G A  ++   ++  I++I++  +  VD L  D   L 
Sbjct: 452 RFGVRGMAINMITVNEMALIESIKQFYKCNVDLLECDPEELE 493


>gi|281340691|gb|EFB16275.1| hypothetical protein PANDA_013325 [Ailuropoda melanoleuca]
          Length = 496

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 107/490 (21%), Positives = 194/490 (39%), Gaps = 41/490 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F  +GL P+++ A+ D G+ +PT IQ K IPL L+  D+   A+TG+GKTA++ +P    
Sbjct: 9   FEHMGLDPRLLQAIADLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPALQL 68

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQ 115
           +L     G A  +  R L+L PT+ELA Q     ++        + +            +
Sbjct: 69  LLHRKATGPAVEQAVRGLVLVPTKELARQARSMIQQLAAYCARDIRVADVSAAEDSASQR 128

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              +E+   V+      +        +L +++E+LV+DEAD +   GF   ++++   +P
Sbjct: 129 AVLMEKPDMVVGTPSRVLNHLQQDSLVLRDSLELLVLDEADLLFSFGFEEELKSLLCHLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q  L SAT  +++Q + E  L NP  +++             F         K  LL
Sbjct: 189 RIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLRQFQVVCQTEEDKFLLL 248

Query: 236 QQLLQSQDTMKNGIIFCNQ---------------------------KKNVVNLCHSLEKQ 268
             LL+        ++F N                                  +    +  
Sbjct: 249 YALLKLSLVRGKSLLFVNTLDRSYRLRLFLEQFSIPTCVLNGELPLCSRCHIISQFNQGF 308

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
              V A    +                 +        ARG+D   V  V NFD+P   E 
Sbjct: 309 YDCVIATDAEVLGAPVKGKRRGRGSKGDRASDPEAGVARGIDFHHVSAVLNFDLPPTPEA 368

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHR GRT RA   G   T V   +  H+  IE+L+  + +     L      +E+I+  
Sbjct: 369 YIHRAGRTARANNPGMVLTFVLPTEQSHLHTIEELL--RGENGAPVLLPYQFRMEEIEGF 426

Query: 389 QHNHARKNNPIPQKSTGFDR----RKKNYSSQKSHIPLKESEK-ISKLQQDIQENDADSL 443
           ++        + +++    R    +++   S++     +++ + +  L+ D+  + A   
Sbjct: 427 RYRCRDAMRSVTKQAIREARLKEIKEELLHSERLKTYFEDNPRDLQLLRHDLPLHPAVVK 486

Query: 444 GFRGNMPAFM 453
              G++P ++
Sbjct: 487 PHLGHVPDYL 496


>gi|255513847|gb|EET90112.1| DEAD/DEAH box helicase domain protein [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 434

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 184/376 (48%), Gaps = 9/376 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F D+G+S ++   +   G   PT +Q ++IP VL   D+   A+TGTGKT +F+LP+
Sbjct: 1   MNEFEDIGISKRLASGLSAIGITAPTDVQRESIPKVLSGRDIIVRAKTGTGKTYAFLLPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           +  + +G    R    LIL PT    A          ++  +   +  GG+    Q +K+
Sbjct: 61  MEKISRG----RDIEALILAPT-RELAVQIFESGYKLRDNEIRAVVAYGGVSINMQMQKI 115

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG ++LI TPGRILD  +RG L +  ++ LV+DEAD MLDMGFI  +++I       RQ
Sbjct: 116 SRGCNILIGTPGRILDLISRGVLDLEKVKYLVLDEADIMLDMGFIDDVKDIVRHTGRGRQ 175

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+ FSAT+  EL  ++  F++NP+ I V     +             +  K       L 
Sbjct: 176 TMFFSATIPRELHSLANEFMRNPEFISVGEKEDSIVNTISHTYCEVGRNEKFS---ALLA 232

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +      I   + K    +  S  +       +      ++R +   N  +    ++
Sbjct: 233 YIDEYKPKKTIIFAETKFGAEILASALRNAGYESLLMHGGLSQNRRENTLNNFKTDATML 292

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V +++ ARG+DI D+  V N+D P+    Y+HR+GR+ R G  G+AF+++  +    I  
Sbjct: 293 VTTNVTARGIDIRDISDVINYDCPDNPRVYLHRVGRSARMGADGRAFSIITHQQRNLISD 352

Query: 360 IEKLIEKKVDWLNGDL 375
           IE + +  V  L  ++
Sbjct: 353 IEYMAKIDVKELRLNV 368


>gi|296824810|ref|XP_002850715.1| ATP-dependent RNA helicase DBP8 [Arthroderma otae CBS 113480]
 gi|238838269|gb|EEQ27931.1| ATP-dependent RNA helicase DBP8 [Arthroderma otae CBS 113480]
          Length = 527

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 129/432 (29%), Positives = 207/432 (47%), Gaps = 19/432 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL+P +V ++      +PT IQ   IP +++  D  G ++TG+GKT +F  P+L 
Sbjct: 99  SFASLGLAPWLVSSLKAMEIKRPTAIQKCCIPEIIKGRDCIGGSRTGSGKTVAFAAPILH 158

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                         ++L PTRELA Q+ +  +      +L   L+ GG     Q   L +
Sbjct: 159 KW---SEDPFGIFAVVLTPTRELALQIFEQIKAISAPQSLKPLLITGGSDMRPQAIGLSQ 215

Query: 122 GADVLICTPGRILDHFNRGKLLMN----NIEILVIDEADRMLDMG---FIPYIQNITSLV 174
              ++I TPGR+ DH              + ++V+DEADR+L  G    +P ++   S +
Sbjct: 216 RPHIVIATPGRLADHIKSSGEDTIVGLKRVRMVVLDEADRLLSSGPGSMLPDVETCLSAL 275

Query: 175 PFTRQTLL--FSATMTDELQ----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
           P +       F+AT+T E++                 E++T ++T               
Sbjct: 276 PPSTNRQTLLFTATVTPEVRALKSMPRAKNRPPIFVTEISTENTTIPPTLKQSYLQVPLN 335

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            ++  L   L    ++ K+ IIFCN+ K    L   L +    V ++H  + Q  R+  L
Sbjct: 336 HREAFLHVLLSTEGNSSKSTIIFCNRTKTADLLERMLRRLSHRVTSLHSLLPQSERVANL 395

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           S F+    +L+VA+D+AARGLDIP VG V NFDVP   ++YIHR+GRT RAGR G+A TL
Sbjct: 396 SRFRASAARLLVATDVAARGLDIPSVGLVINFDVPRNPDDYIHRVGRTARAGREGEAITL 455

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD- 407
           V + D++ + AIE  + K++        +L   + K  + +   + K   + +   G D 
Sbjct: 456 VGQRDVQLVLAIEARVGKQMVAWEEPGVNLESRIVKSTVLKEVGSTKREAMGEIDEGRDI 515

Query: 408 --RRKKNYSSQK 417
             RR +     +
Sbjct: 516 LGRRVRKLKKVR 527


>gi|222423730|dbj|BAH19831.1| AT3G02065 [Arabidopsis thaliana]
          Length = 505

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 109/400 (27%), Positives = 187/400 (46%), Gaps = 12/400 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F   GL PK++  +  AGY  PTPIQ++ IP  L    +   A TG+GKTASF++P++
Sbjct: 110 LTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPII 169

Query: 61  -----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                   E    + R P  ++L PTREL  QV D  +  GK      AL++GG P   Q
Sbjct: 170 SRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQ 229

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             ++++G +++I TPGR++D  ++  + ++NI   V+DE D ML  GF   +        
Sbjct: 230 LYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQV-MQIFQAL 288

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q LLFSAT++ E++KV  +  +    + +  P+   + +    +   A+  K+    
Sbjct: 289 SQPQVLLFSATISREVEKVGGSLAKEIILVSIGNPNKPDKAVNQLAIWVDAKQKKQKLFD 348

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
               Q+       +   ++    +         G    +IHG    + R  ++ +F  G 
Sbjct: 349 ILRSQNHFKPPAVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGE 408

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++V++ +  RG+D+  V  V  FD+P+  + YIH IGR  R G  G     V ++D  
Sbjct: 409 VPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTTIVFVNEDDRN 468

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
               +   ++     +  +L +L           HN  R+
Sbjct: 469 LFPDLVAALKSSGAAIPKELINLTS------REMHNKKRR 502


>gi|300772630|ref|ZP_07082500.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760933|gb|EFK57759.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 398

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 120/372 (32%), Positives = 189/372 (50%), Gaps = 6/372 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +L LS  ++  +      +PT IQ   IP +L+  DV  I+ TGTGKT +F LP+L
Sbjct: 1   MNFQELNLSKLLIEKLNTFQIAEPTGIQKAVIPNILKGKDVLAISPTGTGKTEAFALPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
            +L +   +    +TLIL PTRELA Q     +    +      + I  G  +E Q  +L
Sbjct: 61  HLLTEN--KQSEHKTLILSPTRELAQQTYLRIKNCTPSEVNINTISIFGGQSYEKQASEL 118

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +++ TPGR+LD  ++  + ++  + +VIDEAD ML +GFI  +  I   +P  RQ
Sbjct: 119 STDPAIVVATPGRLLDLMDQKLINLSVFKKVVIDEADEMLKLGFIAALFRIMGHLPAGRQ 178

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   EL+++    L+ P R EV    +    I    +       K         
Sbjct: 179 TLLFSATFPKELEELVPKVLRQPFRFEVQNREAEQSQIHQYLLFVDKNDKKNLIKYL--- 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                +   +IF      V  +   L+K G +   ++G+  Q  R  I+ +FK      +
Sbjct: 236 IDHYKIDAALIFTRTTHGVDRIVSDLQKHGLTAQGLYGDKSQAVRTAIVEDFKNRNFNFL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+A+RGL + D+ HV N+++P+ AE Y+HRIGRT R  R G  +T    ED  ++  
Sbjct: 296 VATDIASRGLHLDDLDHVINYEIPDTAEQYMHRIGRTARGTRDGYTYTFCDAEDNPNLIK 355

Query: 360 IEKLIEKKVDWL 371
           ++  ++K +  L
Sbjct: 356 LQIALKKNIPIL 367


>gi|325570266|ref|ZP_08146132.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156749|gb|EGC68923.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           casseliflavus ATCC 12755]
          Length = 448

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 120/366 (32%), Positives = 188/366 (51%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F      P +  A+ D  +  PT +Q K IP++ +   V G +QTG+GKT +F+LP++
Sbjct: 1   MSFESFKFQPFIYEALADKKFSNPTEVQEKLIPVIQKGRSVVGQSQTGSGKTHTFLLPLM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK--- 117
             ++  +  V++    I  P+RELA Q+    ++ G  ++  + +       + Q +   
Sbjct: 61  DKIDAEKDEVQVV---ITAPSRELATQIYQAAKQIGGFHDPEIRVSNFVGGTDKQRQLSR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              +   V+I TPGRILD  N   L ++   + V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LQNQQPHVVIGTPGRILDMINEQALGVHTANVFVVDEADMTLDMGFLEEVDQIAGRLPEK 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+ ++L+   + ++ NP   E+ + +  ++TI        +   K    L  
Sbjct: 178 LQMLVFSATIPEKLRPFLKKYMANPLIEEIKSKAVISDTI---ENWLISTKGKNTNKLIY 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L +       I+F N K  V  +   L++QG  V  IHG+I  R R +I+   +    Q
Sbjct: 235 QLLTTGHPYLAIVFANTKSRVDEITDYLKEQGLKVAKIHGDISPRERKRIMRQVQNLDYQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N ++P   + +IHR+GRTGR    G A TL    D   I
Sbjct: 295 YVVATDLAARGIDIEGVSHVINAEIPADLDFFIHRVGRTGRNQMDGTAITLYDPSDEGAI 354

Query: 358 DAIEKL 363
            AIE L
Sbjct: 355 QAIEDL 360


>gi|281204115|gb|EFA78311.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 1026

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 195/367 (53%), Gaps = 12/367 (3%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR--MPRTLIL 78
           + KP+ IQ +  P+V    D+ G+A TG+GKT +F+LP L  + K   R     P  L++
Sbjct: 527 FTKPSVIQAQAWPIVSTGADLVGLAATGSGKTLAFLLPALMEIIKHPKRKYGATPLALVM 586

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA Q+ +  +   K   +    + GG     Q + L  G D+++ TPGR+ D   
Sbjct: 587 APTRELAQQIEEVCKNVVKGTAIRQLCVYGGTGKGLQVRSLRSGVDIIVGTPGRLNDLLT 646

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
              L    ++ LV+DEADRMLDMGF+P I+ I + VP  RQTL+FSAT   E++ +S  F
Sbjct: 647 PNHLET--VKFLVLDEADRMLDMGFMPQIEKIINQVPKERQTLMFSATWPREVESLSNRF 704

Query: 199 LQNPKRIEVNT-----PSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
           L  P R+ V         +  + I      T    +K      Q + +QD   N II   
Sbjct: 705 LNKPVRVTVGNTELSANINVHQHIVATTGMTRPDVAKMVGEQIQEIHNQDKKDNLIIVFC 764

Query: 254 QKKNVVNLCHSLEK--QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
            +K   +            +   +H   +Q  R + L+NFK   I +M+A+D+AARGLDI
Sbjct: 765 NQKRNCDHFSEYLYNEFQMNSVVMHSGKEQYQRERGLANFKSHRIPIMIATDVAARGLDI 824

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
           P+V  V N D PN  E+Y+HRIGRTGRAG+ G +++ V++ED  ++  + K++++    +
Sbjct: 825 PNVKAVVNLDFPNNIEDYVHRIGRTGRAGKKGDSYSYVSRED-NNLRDLAKILQRAKQDI 883

Query: 372 NGDLSSL 378
              L  L
Sbjct: 884 PPALEDL 890


>gi|194445037|ref|YP_002040904.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194403700|gb|ACF63922.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 457

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 134/373 (35%), Positives = 213/373 (57%), Gaps = 9/373 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF AQ   L+
Sbjct: 64  RIDVSLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  +S    Q P RIE++T     + +       +   + +   L Q L 
Sbjct: 181 LLFSATWPEAIAAISGRVQQQPIRIEIDTV----DALPAIEQQFFETSAHEKISLLQTLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN KK+   +C +L   G S  A+HG+++QR R + L  F  G+ +++V
Sbjct: 237 SQHKPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +  A E+ +  + +
Sbjct: 297 ATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANIL 356

Query: 361 EKLIEKKVDWLNG 373
            ++++ K++WLN 
Sbjct: 357 SEMLQLKLNWLNA 369


>gi|302786394|ref|XP_002974968.1| hypothetical protein SELMODRAFT_232454 [Selaginella moellendorffii]
 gi|300157127|gb|EFJ23753.1| hypothetical protein SELMODRAFT_232454 [Selaginella moellendorffii]
          Length = 408

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 136/397 (34%), Positives = 208/397 (52%), Gaps = 11/397 (2%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMP----R 74
           +G+ KP+PIQ  + P +L   D+ GIA TG+GKT +F +P L  +   + + +      R
Sbjct: 5   SGFEKPSPIQAHSWPFLLDGRDLIGIAATGSGKTLAFGVPALVHILNHKKKEKKHSKGSR 64

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTRELA Q+A   E+ G +  + V  L GG     Q   L  G D+++ TPGR+ 
Sbjct: 65  CLVLSPTRELAQQIAAVLEEAGASCGVKVVCLYGGSSKGPQYSSLRSGCDIVVATPGRLQ 124

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D  + G   ++ I  LV+DEADRMLD+GF P ++ I S +P  RQT++ SAT    +QK+
Sbjct: 125 DFVDEGVCKLDQITYLVLDEADRMLDLGFEPAVRAIVSHIPQERQTIMLSATWPTSVQKL 184

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ---LLQSQDTMKNGIIF 251
           ++ F+Q+   +++   S                  K      Q    L  +      ++F
Sbjct: 185 AQEFIQDASPVKITVGSEDLSANHDVTQIVEVLDDKSRDRRLQELLRLYHKTKRNRVLVF 244

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
              KK  V + + L+KQG+ V  IHG+  Q++R + LS FK+G+  L++A+D+AARGLDI
Sbjct: 245 VLYKKEAVRVENFLQKQGWKVTGIHGDKSQQARNQALSAFKDGSHPLLIATDVAARGLDI 304

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
           PDV  V N+  P   E+Y+HRIGRTGRAG+ G A T     D      +  ++ +    +
Sbjct: 305 PDVEFVINYSFPLTTEDYVHRIGRTGRAGKKGTAHTFFTTADKARAGELVNILREARQIV 364

Query: 372 NGDL----SSLNPPLEKIDIAQHNHARKNNPIPQKST 404
             +L    + +     K+  A       + P  QK T
Sbjct: 365 PEELLKFGAHVKKKESKLYGAHFRELAADAPKAQKIT 401


>gi|294658297|ref|XP_460627.2| DEHA2F06138p [Debaryomyces hansenii CBS767]
 gi|91208173|sp|Q6BME5|SUB2_DEBHA RecName: Full=ATP-dependent RNA helicase SUB2
 gi|202953024|emb|CAG88955.2| DEHA2F06138p [Debaryomyces hansenii]
          Length = 435

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 97/375 (25%), Positives = 167/375 (44%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q   IP  +   DV   A++G GKTA FVL  L  
Sbjct: 53  FRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQ 112

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+     +         E   ++  + A   +                     + K  + 
Sbjct: 113 LDPVPGEISTLVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGTPITRDLEKLKNKDT 172

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFIPYIQNITSLVPFTRQT 180
              +++ TPGR+        + +NNI+  VIDE D++   +     +Q+I    P  +Q 
Sbjct: 173 CPHIVVATPGRLHALVTEKSIRLNNIKSFVIDECDKVLEAVDMRRDVQDIFRNTPHQKQV 232

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ E++ V + F+QNP  I V+  +         +     +  K        L 
Sbjct: 233 MMFSATLSQEIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYIKLDEKEKNR--KLSDLL 290

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF    +    L   L    F   A+H  + Q  R++   +FKE   ++ V
Sbjct: 291 DSLEFNQVIIFVRSTQRANELNKLLCSSNFPSIAVHSGLPQEERIERYKSFKEFNKRICV 350

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           ++D+  RG+DI  +    N+D+PN A+ Y+HR+GR GR G  G A +LV  K+D + ++ 
Sbjct: 351 STDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAVSLVSTKDDEEVLEK 410

Query: 360 IEKLIEKKVDWLNGD 374
           I+   + K+     +
Sbjct: 411 IQSRFDVKITEFPEE 425


>gi|193652513|ref|XP_001948824.1| PREDICTED: probable ATP-dependent RNA helicase DDX10-like
           [Acyrthosiphon pisum]
          Length = 786

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 104/386 (26%), Positives = 175/386 (45%), Gaps = 4/386 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F    LS   +  + D  Y  PT IQ ++I   L+  D+ G A+TG+GKT +F++P + 
Sbjct: 41  KFEHFPLSAPTLKGLKDNKYFVPTEIQRESIGYSLRGEDILGAAKTGSGKTLAFLIPVLE 100

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +      R      LI+ PTRELA Q+ +   K G +++ +  L+IGG   + + K+L+
Sbjct: 101 ILYCNKWNRTEGLAALIITPTRELAYQIFETLRKIGIHHDFSAGLIIGGKDLKFERKRLD 160

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      +           +N+ +LV+DEADR LDMGF   + +I   +P  RQT
Sbjct: 161 QCNIMICTPGRLLQHMDENPLFDCSNMLVLVLDEADRCLDMGFQQTMNSIIENLPPERQT 220

Query: 181 LLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT T  ++  V  +               +  +           + K   L   + 
Sbjct: 221 LLFSATQTKSVKDLVRLSLSNPHLISVHEDSEHSTPSGLVQSYMVCDLHDKMSLLWSFIK 280

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                     +   ++           + G S+ A++G + Q  RM +  +F      ++
Sbjct: 281 NHLHHKVLVFMSSCKQVKYFYEILCKLRPGTSLLALYGTMHQTKRMAVYESFSRKQRSVL 340

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V   D P  A  YIHR GRT R  + G++  ++   ++  +  
Sbjct: 341 FATDIAARGLDFPAVNWVVQLDCPENANEYIHRAGRTARFQKSGESLLVLLPSELAILKQ 400

Query: 360 IE--KLIEKKVDWLNGDLSSLNPPLE 383
           +E  K+   ++      L+S+   LE
Sbjct: 401 LENKKIPISEIKVNPNKLTSIQRTLE 426


>gi|156407059|ref|XP_001641362.1| predicted protein [Nematostella vectensis]
 gi|156228500|gb|EDO49299.1| predicted protein [Nematostella vectensis]
          Length = 507

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 109/497 (21%), Positives = 203/497 (40%), Gaps = 40/497 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  +GL  ++V A+    + KPTPIQ K I L L+  DV   A+TG+GKTA++ +P++
Sbjct: 9   LSFDSMGLDDRIVKAISKLNWSKPTPIQEKAITLALEGKDVLARAKTGSGKTAAYAIPVV 68

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEK--YGKNYNLTVALLIGGIPFEAQN 116
                EK   +    R LIL PT+ELA Q A N ++        + VA +  G     + 
Sbjct: 69  QRILQEKQTCKESYIRALILVPTKELAQQAARNAKELSSCCAREVRVADVAQGNLPSTKP 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             +++   V+    G +     +   L +++++LVIDEAD +   G+   ++ + S +P 
Sbjct: 129 LLMDKPDIVVGTPSGILGHIQAKNMDLKDSLQMLVIDEADLVFSYGYEDDLKVLLSHLPK 188

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q  L SAT+TD+++ + +  L NP  +++N      +     ++       K   +  
Sbjct: 189 IYQAFLMSATLTDDVKALKKLVLHNPVTLKLNESQLPEDDRLVQYLIKCEPDDKFLLIYT 248

Query: 237 ---------------QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
                            +     +K  +   + K  V+N       +   V   + ++  
Sbjct: 249 LLKLRLVRGKTLLFVNGIDRCYRLKLFLEQFSIKACVLNSELPHNSRLHIVEEFNRDVYD 308

Query: 282 ----------------RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNR 325
                           R              +        ARG+D   V +V NFD P+ 
Sbjct: 309 YIIASDEASLDLAPSSRILAFFFYKISFIFRRKKDKEYGVARGIDFQGVENVINFDFPST 368

Query: 326 AENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
            E YIHR+GRT R    G A + V   D   I   E+ + ++              +E+I
Sbjct: 369 VEAYIHRVGRTARGDSSGTALSFVTHSDNTVISKAEERLAQETGSDKEVFKPFQFRMEEI 428

Query: 386 DIAQHNHARKNNPIPQKSTGFDR----RKKNYSSQKSHIPLKESEK-ISKLQQDIQENDA 440
           +  ++        + + +    R    +++  +S+K     +++ + +  L+ D + + A
Sbjct: 429 EGFRYRARDAIRAVTKTAVKEARLKEIKREILNSEKLKAYFEDNPRDLQVLRHDKELHPA 488

Query: 441 DSLGFRGNMPAFMLPKN 457
                  N+P ++   N
Sbjct: 489 KVQAHMKNVPDYLGIPN 505


>gi|19113180|ref|NP_596388.1| ATP-dependent RNA helicase Dbp3 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|1723271|sp|Q10202|DBP3_SCHPO RecName: Full=ATP-dependent RNA helicase dbp3
 gi|3451298|emb|CAA20430.1| ATP-dependent RNA helicase Dbp3 (predicted) [Schizosaccharomyces
           pombe]
          Length = 578

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 125/380 (32%), Positives = 191/380 (50%), Gaps = 11/380 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +L +S K+   +    Y +PTPIQ  T P +L   DV GIA+TG+GKT +F +P L
Sbjct: 167 LQFDELDVSAKLREGLK--NYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPAL 224

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L        +PR L++ PTRELA Q  +N     +  NL   ++ GG P   Q +  +
Sbjct: 225 QYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAK 284

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             + + I TPGR+LD  N G +  + +  LV+DEADRMLD GF   I+NI S  P   + 
Sbjct: 285 NASVI-IGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRN 343

Query: 181 -----LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV---ATYAQYSKKC 232
                + FSAT  + ++ ++  FL++P +I + +    A       V          +  
Sbjct: 344 GSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERML 403

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             L +   S     + I+     K           + ++V  IHG++ Q +R++ L++FK
Sbjct: 404 DNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLARKYNVVGIHGDMSQGARLQALNDFK 463

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   ++VA+D+AARGLDIP V  V N   P   E+Y+HRIGRTGRA   G A T    +
Sbjct: 464 SGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQ 523

Query: 353 DIKHIDAIEKLIEKKVDWLN 372
           D  H   +  ++ +    + 
Sbjct: 524 DKSHAGELVNVLRQAKQDIP 543


>gi|119469633|ref|ZP_01612502.1| ATP-dependent RNA helicase, specific for 23S rRNA [Alteromonadales
           bacterium TW-7]
 gi|119446880|gb|EAW28151.1| ATP-dependent RNA helicase, specific for 23S rRNA [Alteromonadales
           bacterium TW-7]
          Length = 466

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 136/404 (33%), Positives = 217/404 (53%), Gaps = 15/404 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L   +V  +   GY   TP+Q +++P VL+  D+   A+TG+GKTA+F L +L  
Sbjct: 10  FSSLALPAGLVDNLSTLGYAHMTPVQAQSLPPVLEGKDIIAQAKTGSGKTAAFSLGVLAK 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L   R R++   +L+L PTRELA QVA    K  +  +    L +  G+    Q   LE 
Sbjct: 70  LNVKRFRIQ---SLVLCPTRELAEQVAVEMRKLARGIHNIKILTLCGGVSIGPQIGSLEH 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  +G L ++++E LV+DEAD+MLDMGF   +  I   +P  RQTL
Sbjct: 127 GAHIIVGTPGRVDDHIRKGTLRLDDVETLVLDEADQMLDMGFQDTLDAIIECIPQNRQTL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++ +++  L NP+ I+V       E             +K+     +LL  
Sbjct: 187 LFSATFPRAIEAIAKRVLSNPEMIKVEE---EQEKSTIKQYFYKMDNNKQRYPTLKLLLL 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T ++ ++FCN K     +C  L  +GFS  A+HG+++QR R + L +F   +  ++VA
Sbjct: 244 KFTPQSCVVFCNTKVETQQVCDDLADEGFSAVALHGDLEQRDRERTLIHFANKSASILVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V N+ + +  + ++HR+GRTGRAG+ G A ++    +   +  I 
Sbjct: 304 TDVAARGLDIDDMDMVINYHLAHDPQTHVHRVGRTGRAGKKGIACSIYGDAEQFKVAQIG 363

Query: 362 KLIEKKVDWLNGDLSSL--NPPLEK------IDIAQHNHARKNN 397
              E+  +       +L   PP +       ID  +    R  +
Sbjct: 364 DHYERDFEPEPMPSYNLLDKPPYKPEMVTLMIDSGKKQKVRAGD 407


>gi|326316425|ref|YP_004234097.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323373261|gb|ADX45530.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 461

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 150/428 (35%), Positives = 228/428 (53%), Gaps = 15/428 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLSP +V A    G+  PTPIQ++ IP VL   DV G AQTG+GKTA+F LP+L
Sbjct: 17  MPFAALGLSPALVHAAGALGFDTPTPIQVQAIPAVLDGRDVLGRAQTGSGKTAAFGLPLL 76

Query: 61  TILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNL---TVALLIGGIP 111
             L     +       R PR L+L PTRELAAQV +   +   +       +A+  GG+ 
Sbjct: 77  QRLLPQAQQAGARPGPRRPRALVLVPTRELAAQVGEVLRELAGHLPGPRLKIAIAFGGVS 136

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q   L  GAD ++ TPGR+LD      L ++ ++ LV+DEAD++LD+GF   +Q + 
Sbjct: 137 INPQLMALRGGADAVVATPGRLLDLVEHNALSLSQVQALVLDEADQLLDLGFAEELQRVL 196

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +L+P  RQ LLFSAT    + +++E  L++P RIE+     TA  I    +A      ++
Sbjct: 197 ALLPAQRQNLLFSATFEPGVARLAEGLLRDPLRIEIAEAPGTAPDIAQRAIAVEGP--RR 254

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL+QLL  +      ++F   +    ++   L + G      HG + Q +R ++L  F
Sbjct: 255 TQLLKQLLTQEPGWTRVLVFVATQYAAEHVAEKLYQSGIYASPFHGGLSQGTRRQVLQEF 314

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           ++   Q++V +DLAARG+DI  +  V N+D+P  A +Y+HRIGRTGRAG  G A + V  
Sbjct: 315 RDERWQVLVTTDLAARGIDIAGLPAVVNYDLPRAAADYVHRIGRTGRAGASGVAVSFVTP 374

Query: 352 EDIKHIDAIEK---LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           E   H   + +   L    V+ + G   +L P  ++    Q +   +   +P  + G   
Sbjct: 375 EAAPHWQLLARRHGLQALPVEQVAGFEVALAPAAQEAGT-QEDAPARPGKLPPGTGGIKG 433

Query: 409 RKKNYSSQ 416
           R+ +   +
Sbjct: 434 RRPSKKDK 441


>gi|302902561|ref|XP_003048671.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256729605|gb|EEU42958.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 804

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 121/467 (25%), Positives = 220/467 (47%), Gaps = 20/467 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F+ L LS      +  + +   T +Q + IPL L+ +DV G A+TG+GKT +F++P + 
Sbjct: 53  NFSHLPLSVPTASGLEASHFQVLTDVQAQAIPLALKGNDVLGAAKTGSGKTLAFLIPVLE 112

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +             LIL PTRELA Q+ +   K G+N+  +  L+IGG   + + ++L+
Sbjct: 113 KLYRAQWTEYDGLGALILSPTRELAVQIFEVLRKVGRNHVFSAGLVIGGKSLKEEAERLD 172

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +           NN++ILV+DEADR++DMGF   +  +   +P +RQT
Sbjct: 173 RMNILVCTPGRMLQHLDQTAGFDANNLQILVLDEADRIMDMGFQSAVDALVEHLPKSRQT 232

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT + ++  ++   L++P+ + V+  +++A              ++K         
Sbjct: 233 LMFSATQSKKVSDLARLSLKDPEYVSVHEAAASATPTTLQQHYISTPLTEKL-DTLYGFI 291

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQL 298
             +     I+F +  K V  +  S       +    +HG   Q +RM+I S F       
Sbjct: 292 KANLKSKIIVFLSSGKQVRFVYESFRHLQPGIPLLHLHGRQKQIARMEITSRFTAAKHSC 351

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+ ARG+D P V  V   D P   + YIHR+GRT R   +G+A   +   +   + 
Sbjct: 352 LFATDVVARGIDFPAVDWVIQADCPEDVDTYIHRVGRTARYQSNGRAVLFLDPSEEPGM- 410

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            ++KL +KK+            P++++++ +       + +  +S  F      Y  QK+
Sbjct: 411 -LKKLEQKKI------------PIQRVNVKEKKKKNIKDHL--QSMCFQNPDLKYLGQKA 455

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDKL 465
            I   +S  I K +   + +  D  GF  ++     P+ + +  D +
Sbjct: 456 FISYAKSIYIQKDKDVFKFDKLDLDGFAASLGLPGTPQIKFQKGDDI 502


>gi|218201153|gb|EEC83580.1| hypothetical protein OsI_29242 [Oryza sativa Indica Group]
          Length = 883

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 127/389 (32%), Positives = 213/389 (54%), Gaps = 9/389 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +V   V   GY  PTPIQ K +PL+L  HD+  +A+TG+GKTA+F++PM+  
Sbjct: 51  FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQR 110

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +        R LIL PTR+LA Q     ++ GK  +L ++L++GG   E+Q ++L   
Sbjct: 111 LRR-HDAGAGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAEN 169

Query: 123 ADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR++ H      L +  +E +V DEAD +  +G I  + +I   +  TRQTL
Sbjct: 170 PDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSLFSLGLIQQLHDILHKLSDTRQTL 229

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L   ++  L++P+ + ++     +  +      T  Q  K  ALL  + + 
Sbjct: 230 LFSATLPQALADFAKAGLRDPQIVRLDLDKKISPDL-KLAFFTLRQEEKLAALLYLVRER 288

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  IIF + K +V  L     ++G      +G +DQ +R   +S F+     +++ 
Sbjct: 289 ISSEEQTIIFVSTKHHVEFLNILFREEGLEPSLSYGAMDQEARNIHISKFRARKTMILIV 348

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP + +V N+D P + + ++HR+GR  R GR G A+T V  ED+ ++  + 
Sbjct: 349 TDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRSGTAYTFVTSEDMAYLLDLH 408

Query: 362 KLIEKKV------DWLNGDLSSLNPPLEK 384
             + K +      + L  D+  +N  +++
Sbjct: 409 LFLSKPLRPAPTEEELLKDMEGMNLKIDR 437


>gi|158513663|sp|A2YV85|RH29_ORYSI RecName: Full=DEAD-box ATP-dependent RNA helicase 29; Short=RNAH
          Length = 851

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 127/389 (32%), Positives = 213/389 (54%), Gaps = 9/389 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +V   V   GY  PTPIQ K +PL+L  HD+  +A+TG+GKTA+F++PM+  
Sbjct: 51  FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQR 110

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +        R LIL PTR+LA Q     ++ GK  +L ++L++GG   E+Q ++L   
Sbjct: 111 LRR-HDAGAGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAEN 169

Query: 123 ADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR++ H      L +  +E +V DEAD +  +G I  + +I   +  TRQTL
Sbjct: 170 PDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSLFSLGLIQQLHDILHKLSDTRQTL 229

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L   ++  L++P+ + ++     +  +      T  Q  K  ALL  + + 
Sbjct: 230 LFSATLPQALADFAKAGLRDPQIVRLDLDKKISPDL-KLAFFTLRQEEKLAALLYLVRER 288

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  IIF + K +V  L     ++G      +G +DQ +R   +S F+     +++ 
Sbjct: 289 ISSEEQTIIFVSTKHHVEFLNILFREEGLEPSLSYGAMDQEARNIHISKFRARKTMILIV 348

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP + +V N+D P + + ++HR+GR  R GR G A+T V  ED+ ++  + 
Sbjct: 349 TDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRSGTAYTFVTSEDMAYLLDLH 408

Query: 362 KLIEKKV------DWLNGDLSSLNPPLEK 384
             + K +      + L  D+  +N  +++
Sbjct: 409 LFLSKPLRPAPTEEELLKDMEGMNLKIDR 437


>gi|115476424|ref|NP_001061808.1| Os08g0416100 [Oryza sativa Japonica Group]
 gi|158513705|sp|A3BT52|RH29_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 29; Short=RNAH
 gi|113623777|dbj|BAF23722.1| Os08g0416100 [Oryza sativa Japonica Group]
 gi|222640554|gb|EEE68686.1| hypothetical protein OsJ_27320 [Oryza sativa Japonica Group]
          Length = 851

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 127/389 (32%), Positives = 213/389 (54%), Gaps = 9/389 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +V   V   GY  PTPIQ K +PL+L  HD+  +A+TG+GKTA+F++PM+  
Sbjct: 51  FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQR 110

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +        R LIL PTR+LA Q     ++ GK  +L ++L++GG   E+Q ++L   
Sbjct: 111 LRR-HDAGAGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAEN 169

Query: 123 ADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR++ H      L +  +E +V DEAD +  +G I  + +I   +  TRQTL
Sbjct: 170 PDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSLFSLGLIQQLHDILHKLSDTRQTL 229

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L   ++  L++P+ + ++     +  +      T  Q  K  ALL  + + 
Sbjct: 230 LFSATLPQALADFAKAGLRDPQIVRLDLDKKISPDL-KLAFFTLRQEEKLAALLYLVRER 288

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  IIF + K +V  L     ++G      +G +DQ +R   +S F+     +++ 
Sbjct: 289 ISSEEQTIIFVSTKHHVEFLNILFREEGLEPSLSYGAMDQEARNIHISKFRARKTMILIV 348

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP + +V N+D P + + ++HR+GR  R GR G A+T V  ED+ ++  + 
Sbjct: 349 TDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRSGTAYTFVTSEDMAYLLDLH 408

Query: 362 KLIEKKV------DWLNGDLSSLNPPLEK 384
             + K +      + L  D+  +N  +++
Sbjct: 409 LFLSKPLRPAPTEEELLKDMEGMNLKIDR 437


>gi|51449873|gb|AAU01909.1| putative ATP-dependent RNA helicase [Oryza sativa Indica Group]
          Length = 828

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 127/389 (32%), Positives = 213/389 (54%), Gaps = 9/389 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +V   V   GY  PTPIQ K +PL+L  HD+  +A+TG+GKTA+F++PM+  
Sbjct: 28  FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQR 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +        R LIL PTR+LA Q     ++ GK  +L ++L++GG   E+Q ++L   
Sbjct: 88  LRR-HDAGAGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAEN 146

Query: 123 ADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR++ H      L +  +E +V DEAD +  +G I  + +I   +  TRQTL
Sbjct: 147 PDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSLFSLGLIQQLHDILHKLSDTRQTL 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L   ++  L++P+ + ++     +  +      T  Q  K  ALL  + + 
Sbjct: 207 LFSATLPQALADFAKAGLRDPQIVRLDLDKKISPDL-KLAFFTLRQEEKLAALLYLVRER 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  IIF + K +V  L     ++G      +G +DQ +R   +S F+     +++ 
Sbjct: 266 ISSEEQTIIFVSTKHHVEFLNILFREEGLEPSLSYGAMDQEARNIHISKFRARETMILIV 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP + +V N+D P + + ++HR+GR  R GR G A+T V  ED+ ++  + 
Sbjct: 326 TDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRSGTAYTFVTSEDMAYLLDLH 385

Query: 362 KLIEKKV------DWLNGDLSSLNPPLEK 384
             + K +      + L  D+  +N  +++
Sbjct: 386 LFLSKPLRPAPTEEELLKDMEGMNLKIDR 414


>gi|37573051|dbj|BAC98579.1| putative ATP-dependent RNA-helicase [Oryza sativa Japonica Group]
          Length = 828

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 127/389 (32%), Positives = 213/389 (54%), Gaps = 9/389 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +V   V   GY  PTPIQ K +PL+L  HD+  +A+TG+GKTA+F++PM+  
Sbjct: 28  FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQR 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +        R LIL PTR+LA Q     ++ GK  +L ++L++GG   E+Q ++L   
Sbjct: 88  LRR-HDAGAGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAEN 146

Query: 123 ADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR++ H      L +  +E +V DEAD +  +G I  + +I   +  TRQTL
Sbjct: 147 PDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSLFSLGLIQQLHDILHKLSDTRQTL 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L   ++  L++P+ + ++     +  +      T  Q  K  ALL  + + 
Sbjct: 207 LFSATLPQALADFAKAGLRDPQIVRLDLDKKISPDL-KLAFFTLRQEEKLAALLYLVRER 265

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  IIF + K +V  L     ++G      +G +DQ +R   +S F+     +++ 
Sbjct: 266 ISSEEQTIIFVSTKHHVEFLNILFREEGLEPSLSYGAMDQEARNIHISKFRARKTMILIV 325

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP + +V N+D P + + ++HR+GR  R GR G A+T V  ED+ ++  + 
Sbjct: 326 TDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRSGTAYTFVTSEDMAYLLDLH 385

Query: 362 KLIEKKV------DWLNGDLSSLNPPLEK 384
             + K +      + L  D+  +N  +++
Sbjct: 386 LFLSKPLRPAPTEEELLKDMEGMNLKIDR 414


>gi|325191253|emb|CCA26039.1| DEAD box helicase putative [Albugo laibachii Nc14]
          Length = 563

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 112/389 (28%), Positives = 185/389 (47%), Gaps = 6/389 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L LS     A+ + G+ K T IQ K+I  +L  HD+   A+TG+GKT SF++P + 
Sbjct: 72  SFHSLPLSEPTQRALSEMGFEKMTKIQAKSIAPLLSGHDLIAAAKTGSGKTLSFLIPTIE 131

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L K     R     +I+ PTRELA Q+        + ++ T  +++GG    A+ ++L 
Sbjct: 132 LLHKVNFNPRRGAGCIIISPTRELALQIYGVVRDLCRYHSQTHGIIMGGANRGAEAERLS 191

Query: 121 RGADV-LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G ++ +      +    N    L++N++ILVIDEADR+L +GF   ++ I   +P  RQ
Sbjct: 192 KGVNILVSTPGRLLDHLQNTKGFLVHNLQILVIDEADRILSIGFEEEMRQIIKCIPKERQ 251

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT T ++Q ++   ++             A               K   LL    
Sbjct: 252 TMLFSATQTKKVQDLARLSIREKPIYVGIEDEVNATVSSLEQGYVVTPSDK-RFLLLFTF 310

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  ++F +    V      L      V  IHG   Q  R      F      ++
Sbjct: 311 LKKNLSKKVMVFFSACATVKFYGELLNYIDIPVMDIHGKQKQTKRTTTFFQFCNAKTGIL 370

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHID 358
           + +D+AARGLDIP V  +  FD P+  + YIHR+GRT R     GKA  L+  +++  + 
Sbjct: 371 LCTDVAARGLDIPAVDWIIQFDPPDDPKEYIHRVGRTARGAHGSGKALLLLLPDELGFLK 430

Query: 359 AIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +   K+   + ++    L+++   L K+
Sbjct: 431 YLRASKVTLNEYEFPVKKLANVQSQLMKL 459


>gi|221120047|ref|XP_002156431.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 534

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 105/494 (21%), Positives = 200/494 (40%), Gaps = 39/494 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F D  +  ++V A+   G+  P+ IQ + IP  L+  D+   A+TG+GKTA++++P + 
Sbjct: 4   NFTDFDIDDRLVKAISKLGWATPSEIQKRAIPPALEGKDIIIRAKTGSGKTAAYLIPLIQ 63

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL+   +      +++L P++EL  Q   N        +  V+++  G      +  L 
Sbjct: 64  KILKNKESNKPKTLSVVLVPSKELCKQSYRNALDLTSYCSKLVSVVDLGNSTVQSSSSLI 123

Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             AD+LI TP +IL H N   +   + ++ L++DEAD M   G+   ++ IT+ +P   Q
Sbjct: 124 NNADILISTPSKILAHINNKTINLKDFLDYLILDEADMMFSYGYEQDLKTITTSLPKIYQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LL SAT++++++ +    L  P  +++       +   + FV       K   +     
Sbjct: 184 ALLVSATISEDIKCLEALILNKPVILKLEESHLPEKEKLNQFVIKCESSDKYLLIYALFK 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    K  I   +  +         +    +               +    +     ++
Sbjct: 244 LNLVQGKTLIFVNSIDRCYRLKLFLEQFYIRTCVLNSELPQSSRIHIVDEFNRGVYDIVI 303

Query: 300 VASDLAARGLD-------------------------------IPDVGHVFNFDVPNRAEN 328
              +      +                                 DV +V NFD P   + 
Sbjct: 304 ATDEAVVINTNLSNINQNKEKTKKNKKAMKTKKDYAVARGIDFQDVDNVLNFDFPETGDA 363

Query: 329 YIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
           YIHR+GRT R   HG A + V + ED KH+  +E+ ++  V      L   N  +E+I+ 
Sbjct: 364 YIHRVGRTARGNNHGTALSFVASSEDQKHLMTVEEKLKTDVIAKENALKPYNFKIEEIEG 423

Query: 388 AQHNHARKNNPIPQ---KSTGFDR-RKKNYSSQKSHIPLKESEK-ISKLQQDIQENDADS 442
            ++      N + +   K   F   + +   S K  +  +E+ K +  L+ D      D 
Sbjct: 424 LRYRVNDVINSVTRIKVKDARFKEIKSEILHSNKLKMYFEENPKDLRVLRHDKILKPTDQ 483

Query: 443 LGFRGNMPAFMLPK 456
                ++P +++P 
Sbjct: 484 QPHMKDVPEYLVPS 497


>gi|325114139|emb|CBZ49697.1| putative ATP-dependent RNA helicase [Neospora caninum Liverpool]
          Length = 733

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 118/441 (26%), Positives = 192/441 (43%), Gaps = 16/441 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LG+   ++          P+PIQ+  +P  L+  +VCG+A TG+GKT  +  P+L 
Sbjct: 292 SFASLGVPRALIRTAASLHIFHPSPIQVLALPHALRGKNVCGLAPTGSGKTLGYCWPLLQ 351

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + +G     M    +L P RELA QV D F  YG      V LL+GG     + K L++
Sbjct: 352 RIGRGEGHAFMGL--VLLPARELAIQVLDQFRIYGAQLGARVCLLLGGRDLVEEGKLLDQ 409

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+ DH       M     LV        D       ++    +     T 
Sbjct: 410 CPHIVIGTPGRVSDHVQNAPERMKKRLSLVDVLVLDEADRLLSDEFEDDLKTILACVPTS 469

Query: 182 L-------FSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                   FSAT++  L  +   F  +         T       + H ++   A+     
Sbjct: 470 SQGRQTLLFSATVSPALLALQRRFGDDAMLLVDAHRTNQPALPNLSHFYLFVPARMQPVY 529

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L             GI+F    +    +C +LE    +   +H  ++QR R+  L  F+
Sbjct: 530 LLYLLEHTPPFCSDRGIVFAGSVRQTQQICTTLEILKQAATPLHSLMEQRKRVACLEKFR 589

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
             T +L++ +D+A RGLD+P V  V N  VP +A++Y+HR GRT RAGR G A T V  +
Sbjct: 590 SETSRLLICTDVAGRGLDLPRVEFVINMQVPGKAQDYVHRTGRTARAGRKGVALTFVDPK 649

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
            ++ +  IE LI  ++      LSS+N       ++ ++   + + +     GFD + + 
Sbjct: 650 SVRAVHRIEALINTQLQ----PLSSINEQDVLKFLSNYSKVVQKSLLFLNEIGFDEKAEQ 705

Query: 413 YSSQ-KSHIPLKESEKISKLQ 432
           +    K+    +   +  K +
Sbjct: 706 HEEYTKAFKEARRKRRAQKAE 726


>gi|193066966|ref|ZP_03047935.1| ATP-independent RNA helicase DbpA [Escherichia coli E110019]
 gi|192959556|gb|EDV89990.1| ATP-independent RNA helicase DbpA [Escherichia coli E110019]
          Length = 457

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 202/370 (54%), Gaps = 9/370 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEAHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDW 370
             +++ K++W
Sbjct: 357 SDMLQIKLNW 366


>gi|325185113|emb|CCA19605.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 711

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 127/438 (28%), Positives = 216/438 (49%), Gaps = 17/438 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L  K++  ++  G   PT IQ +T P+ L   D+ GIA+TG+GKT +F +PM+ 
Sbjct: 184 SFMQLQLDRKILNLLMKLGLEAPTAIQAQTFPVALSGRDMIGIAKTGSGKTLAFTIPMIW 243

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R   +   P  +++ PTRELA Q+    + + K Y      + GG+    Q + L
Sbjct: 244 HVMDQRELSKGEGPIAIVISPTRELAHQIYTQVKMFTKLYGAECVAVYGGVGKWEQVQAL 303

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +GA+VLI TPGR+++   +  +  N +  +V+DEADRM ++GF   ++++   +   RQ
Sbjct: 304 RKGAEVLIATPGRLIELIRKKTIKTNRVTFVVLDEADRMFELGFESQLRSMLGQLRPDRQ 363

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +LLFSAT    +++++   L NP ++ V       E I    V       K   L++ L 
Sbjct: 364 SLLFSATFRPRIEQLARAILHNPIKVTVGKAGQANEVISQIPVVLLNHGKKWEWLMKNLE 423

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  +  I   ++      L  +L+   +  C +HG+  Q  R   L++FK G   +M
Sbjct: 424 RIVDQGRVLIFANSKV-GCEELSKNLDAMHYRCCLLHGDKSQYDRSSALADFKNGKCPVM 482

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG----RHGKAFTLVAKEDIK 355
           VA+D+A+RGLDI DV  V N+DV    + ++HRIGRTGR G      G A+TL+  ++ +
Sbjct: 483 VATDVASRGLDIRDVKTVVNYDVAKNIDIHVHRIGRTGRMGVDGFEPGVAYTLITNKETQ 542

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI------PQKSTGFDRR 409
               +   ++     ++ +L ++     + D   +   RK  P            G DR+
Sbjct: 543 FAAQLVCNMDTAGQPVSAELLAIA----ERDPCFNRGKRKRTPTESSTCHEDGDEGDDRQ 598

Query: 410 KKNYSSQKSHIPLKESEK 427
           +    +      + +  K
Sbjct: 599 EMERWTATRRKTVADRRK 616


>gi|227886220|ref|ZP_04004025.1| ATP-dependent RNA helicase DbpA [Escherichia coli 83972]
 gi|227836424|gb|EEJ46890.1| ATP-dependent RNA helicase DbpA [Escherichia coli 83972]
 gi|307553405|gb|ADN46180.1| ATP-independent RNA helicase DbpA [Escherichia coli ABU 83972]
          Length = 457

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 209/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +  + T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+  ++C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W     +S   PLE
Sbjct: 357 SDMLQIKLNWQTLPANSSIVPLE 379


>gi|221107786|ref|XP_002161873.1| PREDICTED: vasa-related protein CnVAS1 [Hydra magnipapillata]
          Length = 797

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 116/385 (30%), Positives = 193/385 (50%), Gaps = 9/385 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +FA+  +   ++  V  A Y+KPTP+Q   IP++    D+   AQTG+GKTA+F++P+L 
Sbjct: 354 EFAEANIDRTILENVEKAHYIKPTPVQKYAIPIITGNRDLMSCAQTGSGKTAAFLIPVLN 413

Query: 62  ILEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            L + R       + V+ P  L++ PTRELA Q+     K+ +N ++   ++ GG+    
Sbjct: 414 TLMQFRSELTSSLSEVQAPLALVIAPTRELAVQIQKEARKFAQNTSIKPVVIYGGVQVAY 473

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
             +++++G  +L+ TPGR+ D   + K+ + N++ L++DEADRMLDMGF+P I+ I +  
Sbjct: 474 HLRQVQQGCHLLVGTPGRLKDFLGKRKISLANLKYLILDEADRMLDMGFLPEIKAIINDF 533

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
               +    +   +       +N         V                   +  +    
Sbjct: 534 DMPPKEDRHTLMFSATFPTEIQNLAAEFLNNYVYLTIGKVGGTHSDITQCIMEVEESAKR 593

Query: 235 LQQLLQSQDTMKN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            + +        N  ++F   K+    L   L + GF   +IHG+  Q+ R + L+ FK 
Sbjct: 594 DKLIEILDTEGTNRNLVFVQTKRLADFLASYLCQNGFHTTSIHGDRLQQQREEALAEFKA 653

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-E 352
           GT  +++A+ +AARGLDI DV  V N+D+P+  E YIHRIGRTGR G  GKA +   + +
Sbjct: 654 GTQHVLIATAVAARGLDIADVKQVINYDLPDEIEEYIHRIGRTGRIGNKGKAISFFTRGK 713

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSS 377
           D     A+ K +      +   L  
Sbjct: 714 DEGLARALVKTLADAEQEVPSWLEE 738


>gi|26247679|ref|NP_753719.1| ATP-dependent RNA helicase DbpA [Escherichia coli CFT073]
 gi|26108081|gb|AAN80281.1|AE016760_140 ATP-independent RNA helicase dbpA [Escherichia coli CFT073]
          Length = 457

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 209/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +  + T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+  ++C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W     +S   PLE
Sbjct: 357 SDMLQIKLNWQTLPANSSIVPLE 379


>gi|325686939|gb|EGD28963.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK72]
          Length = 447

 Score =  134 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 135/451 (29%), Positives = 207/451 (45%), Gaps = 12/451 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKK 118
            +L++    V+     I  P+RELAAQ+     +        + +A  IGG     Q  K
Sbjct: 61  QMLDEEADTVQAV---ITAPSRELAAQIYQAARQLASFSEKEIRMANYIGGTDKARQIGK 117

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTI---ENWLLSTKGRDKNAQIY 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             +EK+  K +  +  D        ++   A    +R+            ++KK     K
Sbjct: 355 RELEKMGIKFIPKMIKD-DEFQDTYDRDRRANREKSREKLDTEMLGLVKKKKKKIKPGYK 413

Query: 418 SHIPL--KESEKISKLQQDIQENDADSLGFR 446
             I     E  + +K  ++     A+    R
Sbjct: 414 KKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|294658221|ref|XP_002770738.1| DEHA2F04466p [Debaryomyces hansenii CBS767]
 gi|218511822|sp|Q6BML1|PRP5_DEBHA RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|202952969|emb|CAR66268.1| DEHA2F04466p [Debaryomyces hansenii]
          Length = 913

 Score =  134 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 128/483 (26%), Positives = 220/483 (45%), Gaps = 32/483 (6%)

Query: 3   FADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ LGL   ++  +     Y  P+ IQ + IP ++   D+ G+A+TG+GKT SFVLP+L 
Sbjct: 318 WSQLGLPSTIMSIIEGRLNYSSPSSIQAQAIPAIMSGRDIIGVAKTGSGKTLSFVLPLLR 377

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++      +   P  LI+ PTRELA Q+      + K  N++     GG   E+Q  +L
Sbjct: 378 HIQDQPPLKKGDGPIGLIMTPTRELALQIHKELNHFTKKLNISSCCCFGGSSIESQIAEL 437

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++GA +++ TPGRI+D     +     +  +  LV+DEADRM DMGF P +  + + V  
Sbjct: 438 KKGAQIIVGTPGRIIDLLAANSGRVTNLQRVTYLVLDEADRMFDMGFEPQVTKVFTRVRP 497

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL-- 234
            RQT+LFSAT   +++ +++  L NP  I V   S  A  I         +  K      
Sbjct: 498 DRQTVLFSATFPRKMELLAKKILDNPMEIVVGGISVVASEITQKVELFENEDDKSLEEAK 557

Query: 235 --------LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
                        +  +      +      + + +    EK          +   R    
Sbjct: 558 FSKLLSTLNDYGDKDAECKILIFVEKQIAADELLVKLLTEKYPCLAIHGGKDQIDRKHAI 617

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
              +     + +++A+ +AARGLD+  +  V N++  +  E+Y+HR+GRTGRAGR G A 
Sbjct: 618 REFSSSNSGVNILIATSIAARGLDVKGLNLVINYEAASHMEDYVHRVGRTGRAGRKGTAI 677

Query: 347 TLVAKEDIKHIDAIEKLI---EKKVDWLNGDLSSLNPP-LEKIDIAQHNH------ARKN 396
           T V+ +  + I  + K +   +   D +N  L  ++   LE +   +  +         +
Sbjct: 678 TFVSSKQGRAITDLVKAMRLSKVSEDEINPRLIEISTKFLEGVKSGKEKYNFGFSGKGLD 737

Query: 397 NPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPK 456
           N    + +  D  +K Y  +      K +EK  + + DI ++D D       +P F + +
Sbjct: 738 NLQEIRESNRDLERKVYGEENDSSTFKANEK-KQNKTDIHQSDLDV-----KLPDFHIIE 791

Query: 457 NRG 459
            R 
Sbjct: 792 GRA 794


>gi|332204769|gb|EGJ18834.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA47901]
          Length = 447

 Score =  134 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 201/452 (44%), Gaps = 43/452 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +   +  +
Sbjct: 61  QQLDEASDSVQAV---ITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKDRQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T             
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  +    +
Sbjct: 237 --TQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL-------------------------IEKKVDWLNGDLSSL---------NPPLE 383
             +EKL                          EKK D L+ ++  L             +
Sbjct: 355 RELEKLGIKFSPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKKKKVKPGYKK 414

Query: 384 KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           KI  A     RK      ++ G   RK    +
Sbjct: 415 KIQWAVDEKRRKTKRAENRARGRAERKAKRQT 446


>gi|297161036|gb|ADI10748.1| ATP-dependent RNA helicase [Streptomyces bingchenggensis BCW-1]
          Length = 433

 Score =  134 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 131/441 (29%), Positives = 206/441 (46%), Gaps = 13/441 (2%)

Query: 12  VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR 71
           ++  + + G  +P PIQ  T+P  L   DV G  +TG+GKT +F LP+L      RA  +
Sbjct: 1   MLRTLSELGVREPFPIQAATLPNALAGRDVLGRGRTGSGKTLAFGLPLLARTAGRRAEPK 60

Query: 72  MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
            P  LIL PTRELA QV +    Y +   L +A ++GG+    Q   L  GA+V++ TPG
Sbjct: 61  QPLALILVPTRELAQQVTEALAPYAEALRLRMATVVGGMSIGRQAAALRHGAEVVVATPG 120

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+ D   R    +  + I V+DEAD+M DMGF+P++  +   V    Q +LFSAT+  ++
Sbjct: 121 RLHDLIERRACRLGRVGITVLDEADQMCDMGFLPHVSEVLDQVHPDGQRMLFSATLDRDV 180

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
             +   +L +P    V+  +    T++H  +  +              +        ++F
Sbjct: 181 DHLVRRYLHDPVVHSVDPSAGAVTTMDHHVLVVHGPDR-----YAVTTEIAARDGRVLLF 235

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
            + K  V  L   L   G    A+H    Q  R + L+ FK G I ++VA+++AARGL +
Sbjct: 236 LDTKHAVDQLTRHLRASGVHAAALHSGKSQPQRTRTLAQFKNGQITVLVATNVAARGLHV 295

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371
            D+  V N D P   ++Y+HR GRT RAG  G   TLV     + +  +  + E  ++  
Sbjct: 296 DDLDLVVNVDPPTDPKDYVHRAGRTARAGESGSVVTLVLAGQRREMSRL--MAEAGIEPT 353

Query: 372 NGDLSSLNPPLEKIDIAQHNH-----ARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESE 426
              + S    L +I  A+         R   P P K+T    R    S   S     +S 
Sbjct: 354 ITKVRSGEAELSRITGAKAPSGTPLDGRPAAPRP-KNTNAPFRGLGTSKDTSRGAGGKSR 412

Query: 427 KISKLQQDIQENDADSLGFRG 447
           K  + ++  +   A  +   G
Sbjct: 413 KAGEARKLAEARKAALVRRGG 433


>gi|169608057|ref|XP_001797448.1| hypothetical protein SNOG_07095 [Phaeosphaeria nodorum SN15]
 gi|118575178|sp|Q0UMB9|DBP4_PHANO RecName: Full=ATP-dependent RNA helicase DBP4
 gi|111064626|gb|EAT85746.1| hypothetical protein SNOG_07095 [Phaeosphaeria nodorum SN15]
          Length = 803

 Score =  134 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 135/457 (29%), Positives = 218/457 (47%), Gaps = 28/457 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+DL LS      +    +   T IQ K +PL L+ HD+ G A+TG+GKT SF++P+L 
Sbjct: 50  DFSDLPLSDPTKQGLKACHFAVMTDIQRKAVPLALKGHDILGAAKTGSGKTLSFIIPVLE 109

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNKK 118
            L + +          LIL PTRELA Q+ D   K GK+ ++  A LLIGG   E++ + 
Sbjct: 110 NLYRLQHVGADAGLGALILSPTRELAIQIFDVLCKIGKHGHMFAAGLLIGGKSLESERQA 169

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R   ++      +         L++++++LV+DEADR+LDMGF   +  I   +P  R
Sbjct: 170 LPRMNILVATPGRMLQHLSQTAAFLVDDLKMLVLDEADRILDMGFQRDVDAIIDYLPKER 229

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT + ++  ++   LQ+P+ + V+    +A               +K       
Sbjct: 230 QTLLFSATQSKKVSDLARLSLQDPEYVSVHAEDKSATPKSLQQNYIICPLEEKL-DTLWS 288

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTI 296
                     ++F +  K V  +  S       +    IHG   Q +R+   + F     
Sbjct: 289 FIQASKKSKILVFFSSAKAVRFVYESFRHMQPGIPLLHIHGRQKQGARLDTTAKFSSAKN 348

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
             + A+D+AARGLD P V  V   D P+  + YIHR+GRT R  R G+    +A  + + 
Sbjct: 349 SCLFATDVAARGLDFPAVDFVIQVDCPDDVDTYIHRVGRTARYNREGRGVLFLAPSEEEG 408

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  +++L  KKV            P+E I++ Q    R++     ++  F      Y  Q
Sbjct: 409 M--LKRLEAKKV------------PVEAINVRQKK--RQSIKEQLQNMCFQDPALKYLGQ 452

Query: 417 KSHIP------LKESEKISKLQQDIQENDADSLGFRG 447
           K+ +       L++ +++ +L++   E  A SLG  G
Sbjct: 453 KAFMTYVKSVYLQKDKEVFQLKEYDLEAFAASLGLPG 489


>gi|327309270|ref|XP_003239326.1| ATP-dependent RNA helicase SUB2 [Trichophyton rubrum CBS 118892]
 gi|326459582|gb|EGD85035.1| ATP-dependent RNA helicase SUB2 [Trichophyton rubrum CBS 118892]
          Length = 441

 Score =  134 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 81/375 (21%), Positives = 148/375 (39%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++ A+ D G+  P+ +Q   IP  +   DV   A++G GKTA F L  L  
Sbjct: 60  FRDFYLKAELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFALTTLHQ 119

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                G   + +         +        +         +           E  + K  
Sbjct: 120 LEPVPGTCSILVMCPTRELAYQIKDEYARFSKYMPDVKTAVFYGGTPIQKDIEILSSKDT 179

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++           ++   L N    ++ +    +        +Q I    P  +Q 
Sbjct: 180 HPNIIVGTPGRLNALLRDKKLSLRNIKSFVLDECDKMLDQKDMRADVQEIFRSTPADKQV 239

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT+  E++ + + F++NP  + V+  +         +    ++  K   L +    
Sbjct: 240 MMFSATLAQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEAEKNRKLNEL--L 297

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF         L   L +  F   A+H  + Q  R+K    FKE   ++ V
Sbjct: 298 DNLEFNQVIIFVKSTVRATELDKLLRECNFPSIAVHSGVSQEERIKRYREFKEFNKRICV 357

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED-IKHIDA 359
           A+D+  RG+DI  +    N+D+P  A++Y+HR+GR GR G  G + + V+ E+ ++ +  
Sbjct: 358 ATDVFGRGIDIERINLAINYDMPIDADSYLHRVGRAGRFGTKGLSISFVSDEENMQVLKD 417

Query: 360 IEKLIEKKVDWLNGD 374
           IEK  E  +     +
Sbjct: 418 IEKRFEVALPEYPEE 432


>gi|145476289|ref|XP_001424167.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391230|emb|CAK56769.1| unnamed protein product [Paramecium tetraurelia]
          Length = 475

 Score =  134 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 120/374 (32%), Positives = 190/374 (50%), Gaps = 11/374 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L   +   +       P+ IQ   +PL+   HDV  IA+TG+GKT ++ LP   +  + +
Sbjct: 109 LPESLQETLKARNITSPSSIQQAIMPLIFDGHDVIAIAETGSGKTLAYALP-GIMHLQAQ 167

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
             V  PR L++ PTRELA Q+   ++ +          L GGIP   Q   L     V+I
Sbjct: 168 PPVAGPRILVMAPTRELAQQIQTQYDLFA-----KTCCLYGGIPKPHQYVSLSETPQVII 222

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+LD    G  L +  ++ V+DEADRMLDMGF   I+++   V   RQTL FSAT 
Sbjct: 223 ATPGRLLDFIKGGLTLKSITQV-VLDEADRMLDMGFEDQIRDVLKEVRKDRQTLFFSATW 281

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
             E+Q+++ +                +           A  +K   L++    +Q   K 
Sbjct: 282 PQEVQRLANSLCSQDPIFLQLGERGLSVNKNITQSVIIAGGNKFEQLIE--YFNQIKDKK 339

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            ++FC +K +   L + L + G +   +HG++ Q  R  I+ +F+ G +  ++ ++LA+R
Sbjct: 340 VLVFCQKKIDTQKLEYRLSQHGVNARYLHGDLKQNQRDYIMQDFRNGKVNCLITTNLASR 399

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI--KHIDAIEKLIE 365
           GLD+ DV  V N+D P   E+YIHRIGRTGRAG+ G+A + +   D+  +  D + K+ +
Sbjct: 400 GLDVSDVDVVINYDFPENIEDYIHRIGRTGRAGKKGEALSFIQPRDLDYRLKDDLIKVFK 459

Query: 366 KKVDWLNGDLSSLN 379
           +    +   L  L 
Sbjct: 460 QSSQEIPLQLLKLK 473


>gi|145476883|ref|XP_001424464.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391528|emb|CAK57066.1| unnamed protein product [Paramecium tetraurelia]
          Length = 395

 Score =  134 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 98/377 (25%), Positives = 186/377 (49%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L  +++  +   G+++P  +Q + +  ++Q  DV       TGKT    L +L+
Sbjct: 23  TFESMKLRKELLRGINAFGFIRPLEVQQRALVPLIQGRDVVIQNFRSTGKTTVMSLSVLS 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I +    ++++   LIL+ TR+L  + A      GK  N+++     G   +     +++
Sbjct: 83  IFDLSVKKIQV---LILQKTRKLTEENAGLIMALGKFLNVSIHACSEGNSIQDDISVVQQ 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TP R+ +   R ++   +++++++DEAD ML       +  I   +P   Q +
Sbjct: 140 GVQIVLGTPDRVFELVQRKEISFAHLKMIILDEADEMLIDESKSLVYCIFKYLPPKPQYV 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L +AT++ ++    E F  NP  I       T E I+  F+    +  K   L       
Sbjct: 200 LVTATLSQDILDFIEKFFNNPLVIMDKRNELTLEGIQQFFIQVDKEDWKFETLCDL--YE 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFC  K+    L + + +  F+V  IH  + Q+ R +I+ ++K+G  ++++ 
Sbjct: 258 IASITQSVIFCQTKQKCEWLVNKMLESNFTVVQIHEGMSQQQRNEIMRDYKQGIKRVLIG 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+  R LDI  V  + N+DVP   E YI RIGR G+ GR G A TL+  ED K ++ IE
Sbjct: 318 TDILRRCLDIEYVSLIINYDVPTSKELYILRIGRKGKFGRKGVAITLIRSEDFKILNQIE 377

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    ++  L  + + +
Sbjct: 378 QYYSTQIKELPINFTDI 394


>gi|5679690|emb|CAB51742.1| RNA helicase-1 [Plasmodium falciparum]
          Length = 386

 Score =  134 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 196/383 (51%), Gaps = 16/383 (4%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +     ++  +      KPT IQ++ +P +L   D+ GIA TG+GKT  FVLP++    +
Sbjct: 1   MKFPKAILKGLRKKNIKKPTQIQMQGLPSILLGRDIIGIAFTGSGKTIVFVLPLIMKCLE 60

Query: 66  GRARVR-----MPRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGIPFEA 114
              R +      P  LI+ P+RELA Q  +  + + +              +IGGI    
Sbjct: 61  AEIRCKLEEGEGPIGLIICPSRELATQTHNIIKYFCEFLYKDNFPTLRSLCMIGGISAYE 120

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q +++++G  +++ TPGR+ D  N+ ++ +     L  DEADR++D+GF   ++N     
Sbjct: 121 QGREIQKGIHMIVATPGRLNDMLNKKRMTLEQCRYLCFDEADRLIDLGFEEEVRNTLDHF 180

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQTLLFSATM  ++Q+    F ++     +      A       +       ++  L
Sbjct: 181 SNQRQTLLFSATMPKKIQE----FAKSTLVNPIIINVGRAGAANLDVIQEVEYVKEEFKL 236

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
              L   Q T    +IFC  KK+V ++   L  +G +  AIHGN+ Q  R + ++ F+EG
Sbjct: 237 SYLLEVLQKTGPPVLIFCENKKDVDDVHEYLLLKGVNAVAIHGNLGQSERQEAINLFREG 296

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK-ED 353
              ++V +D+A++GLD P + HV N+D+P   ENY+HRIGRTGR G+ G A T + K ++
Sbjct: 297 KKDILVGTDVASKGLDFPSIEHVINYDMPKDIENYVHRIGRTGRCGKTGIATTFINKNQE 356

Query: 354 IKHIDAIEKLIEKKVDWLNGDLS 376
              +  ++ L+ +    +   L 
Sbjct: 357 EAILLDLKALLIEAKQKIPPFLE 379


>gi|325185186|emb|CCA19676.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 494

 Score =  134 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 119/458 (25%), Positives = 200/458 (43%), Gaps = 31/458 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L   +  A+ ++G  KPT IQ K+I  VL  H++  +AQTGTGKT S+++P++ 
Sbjct: 38  TFEQYSLHANLCKALHESGIHKPTSIQRKSINAVLSGHNILCLAQTGTGKTLSYMIPIIE 97

Query: 62  ILEKGRAR----------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
            +++  +           +  PR LI  P+RELA Q+    ++   +      ++  G  
Sbjct: 98  KIKRSESAKLRETQAAPLISRPRVLIAVPSRELALQLGSVAKQLAHHVKFASCVVTNGEH 157

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEAD--RMLDMGFIPYIQN 169
            + Q +KL R  D+LI TPGRI+    +    ++ I+ L++DEAD      MGFI  ++ 
Sbjct: 158 KKVQQQKLARPIDILIGTPGRIVTCIKKQDFYLSQIDTLILDEADTLFDAKMGFIDDLKA 217

Query: 170 ITSLVPFTRQTLLFSATMT----------DELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
           I + +  +                       +       ++     + N      +    
Sbjct: 218 ILAPIQASCHKRECKLQSILVAATATKSVGRVWNRMFEGIKLVSDNQFNRIPKEIKQTFV 277

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                      + AL Q   + +   +  IIFCN   +     H L + GF   ++H ++
Sbjct: 278 RVAPQAKYTVLRDALEQHRGRGKAKFQRTIIFCNDIASCQAAEHMLRQNGFKTASLHKDV 337

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            +  R   + NF  G++ ++V +DL  RGLDI  + HV   D P    +YIHR+GRTGRA
Sbjct: 338 PKPIRQAAIQNFDSGSVPVLVCTDLGGRGLDIDSIEHVIMLDFPRSVIDYIHRVGRTGRA 397

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLI---EKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-- 394
           G+ G   + + K D      ++K +   EKK   L  D SSL    + + + + +     
Sbjct: 398 GKAGYVTSFMTKGDTTVYRMLQKSMRDAEKKTHPLISDASSL----KHLQVFREDTTSND 453

Query: 395 KNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQ 432
           K    P + +    RKK     K     K     S+++
Sbjct: 454 KKRVKPDRESTLTVRKKRVQGTKKLSSYKRRVTRSRVK 491


>gi|225712874|gb|ACO12283.1| Eukaryotic initiation factor 4A-II [Lepeophtheirus salmonis]
 gi|290561827|gb|ADD38311.1| Eukaryotic initiation factor 4A-II [Lepeophtheirus salmonis]
          Length = 413

 Score =  134 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 196/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   G+ KP+ IQ + I   ++  D    AQ+GTGKTA+F + +L 
Sbjct: 41  SFDDMNLKEDLLRGIYSFGFEKPSAIQQRAIVPCIKTRDAIAQAQSGTGKTATFSIAILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    R +    LIL PTRELA Q+       G     T    IGG    +  + LE 
Sbjct: 101 KIDISMNRTQA---LILAPTRELAQQIQKVVLSLGDFLKATCYACIGGRSISSDIRALEH 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D   R  L   NI++ V+DEAD ML  GF   I ++   +    Q +
Sbjct: 158 GPHIVVGTPGRVFDMITREHLRTENIKMFVLDEADEMLSRGFKEQIYDVFRHLNQDIQVV 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM D++  V++ F+++P RI V     T E I   +V    +  K   L       
Sbjct: 218 LMSATMPDDVLDVTKRFMRDPIRILVRKEELTLEGILQFYVFVEKEEWKLSTLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   +  + F+V ++HG + Q  R  I+  F+ G+ ++++ 
Sbjct: 276 TLTITQAVIFCNTRRKVCWLTEKMGLKHFTVSSMHGEMSQEEREVIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  +  V N+D+P   ENYIHRIGR GR GR G A   + + D   +  IE
Sbjct: 336 TDLLARGIDVQQISLVINYDLPVNKENYIHRIGRGGRFGRKGVAINFITEGDRMALQDIE 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    +++ +  D+++L
Sbjct: 396 KHYHTQIEEMPKDVANL 412


>gi|114580556|ref|XP_001154671.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 isoform 2 [Pan
           troglodytes]
          Length = 675

 Score =  134 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 122/397 (30%), Positives = 201/397 (50%), Gaps = 14/397 (3%)

Query: 2   DFADL-GL-SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L  L +   + A+ + G+   T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 178 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPA 237

Query: 60  LTILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K R   R    + IL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 238 VELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK 297

Query: 119 LERGADVLICTPGRILDHFNRGKL------LMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           L  G ++++ TPGR+LDH     +       + N++ LVIDEADR+LD+GF   ++ I  
Sbjct: 298 LANGINIIVATPGRLLDHMQVRDVVLVSLSCIKNLQCLVIDEADRILDVGFEEELKQIIK 357

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           L+P  RQT+LFSAT T +++ ++   L+               T++          S+K 
Sbjct: 358 LLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKR 417

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL      ++  K  ++F +   +V      L      V AIHG   Q  R      F 
Sbjct: 418 FLLLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFC 477

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVA 350
                 ++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++ 
Sbjct: 478 NADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILR 536

Query: 351 KEDIKHIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            E++  +  ++  K+   + D+    +S +   LEK+
Sbjct: 537 PEELGFLRYLKQSKVPLSEFDFSWSKISDIQSQLEKL 573


>gi|221057708|ref|XP_002261362.1| DEAD/DEAH box ATP dependent DNA helicase [Plasmodium knowlesi
           strain H]
 gi|194247367|emb|CAQ40767.1| DEAD/DEAH box ATP dependent DNA helicase,putative [Plasmodium
           knowlesi strain H]
          Length = 605

 Score =  134 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 121/380 (31%), Positives = 184/380 (48%), Gaps = 7/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F DL +   +   + +  +V  T IQ K IP  L   D+ G A+TG+GKT +F++P + 
Sbjct: 153 KFDDLDICEALKKGLKELNFVTLTEIQAKCIPHFLNGKDILGAAKTGSGKTLAFLVPSIN 212

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +             LI+ PTREL  Q+    +   K    T  ++IGG+    + KK  
Sbjct: 213 ILYNIKFLPKNGTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEEKKKFI 272

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEIL-VIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            G ++LI TPGR+LDH    K  +    I  +IDEADR+L +GF   I  I   +P  RQ
Sbjct: 273 HGINILIATPGRLLDHMQNTKEFIYKNLISLIIDEADRLLQIGFEEEINLIVKRLPKKRQ 332

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT T +++ +    LQ P  IEV T  +T E +             K  LL    
Sbjct: 333 TALFSATQTTKVENLIRLSLQKPIFIEVTTKIATVERL---QQGYALVDEDKRFLLLFTF 389

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  ++F N   +V      L         IHG   Q  R+K  S F      ++
Sbjct: 390 LKRNISKKIMVFFNNCMSVQFYNDLLNYIDIPTFCIHGKKKQNKRLKSFSEFSAAQSAIL 449

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHID 358
           + +++AARGLDIP+V ++  +D P+ ++ YIHR+GRT R    +G A   + K ++K ++
Sbjct: 450 LCTNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCRGKDSNGSAIIFLMKHELKFLN 509

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            + K     ++    D S L
Sbjct: 510 YL-KFYNIPINQFAYDPSKL 528


>gi|157737778|ref|YP_001490462.1| ATP-dependent RNA helicase DbpA [Arcobacter butzleri RM4018]
 gi|157699632|gb|ABV67792.1| ATP-dependent RNA helicase DbpA [Arcobacter butzleri RM4018]
          Length = 454

 Score =  134 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 195/371 (52%), Gaps = 10/371 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L LS + +  +    Y   T IQ KTIP  LQ  D+   A+TG+GKT +F LP++
Sbjct: 1   MQFSELNLSKEFLQNLDSLEYKTLTLIQEKTIPDALQNKDLIAKAKTGSGKTVAFCLPIV 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L+    +++    LIL PTRELA Q+A N     ++ +    L +  G+PF+ Q   L
Sbjct: 61  NKLKAKEFKIQ---ALILAPTRELANQIAQNLRNLSRHIHNVKVLTLCGGVPFKPQVVSL 117

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +  A +++ TPGR+L H     + + NI   V+DEAD+MLDMGF   I  I   +P  RQ
Sbjct: 118 QHNAHIVVATPGRVLKHIKEKNINLENISTFVLDEADKMLDMGFYDDIMEIIENLPKNRQ 177

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSAT    ++  + N L+NP   E++      E         Y     +   L   L
Sbjct: 178 TMLFSATYEKNIETFASNILKNPIYKEISD-----EKEILINQKFYEVTPSEKTALIPAL 232

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S +  K  +IFCN K     L   L   G  +  +H +++Q+ R + +  F   +  ++
Sbjct: 233 ISHNQAKTTLIFCNMKITCEKLADDLYDLGLDILTLHSDLEQKQRDETMVLFSNKSYPIL 292

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGL I DV  V N+D+    + + HRIGRT RAG+ G A +L  + +I   + 
Sbjct: 293 IATDVASRGLHIDDVDLVINYDLSLDEKIHTHRIGRTARAGKGGLAISLFTENEIDKFEI 352

Query: 360 I-EKLIEKKVD 369
           I EK    K++
Sbjct: 353 IKEKFNNIKIE 363


>gi|170029357|ref|XP_001842559.1| DEAD-box ATP-dependent RNA helicase 8 [Culex quinquefasciatus]
 gi|167862390|gb|EDS25773.1| DEAD-box ATP-dependent RNA helicase 8 [Culex quinquefasciatus]
          Length = 426

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 104/340 (30%), Positives = 170/340 (50%), Gaps = 7/340 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +  L  +++  + + G+ KP+PIQ   IP+ L   D+   A+ GTGKT ++ +P+L 
Sbjct: 49  EFEEFCLKRELLMGIFEKGWEKPSPIQEAAIPIALVGKDILARAKNGTGKTGAYSIPVLE 108

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LI+ PTRELA Q +    +  K+ ++ V +  GG   +    ++ +
Sbjct: 109 QIDPT---KDYIQALIIVPTRELALQTSQICIELAKHMHIRVMVTTGGTNLKDDIMRIYQ 165

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+I TPGRILD  ++    M N  +LV+DEAD++L   F   + ++   +P  RQ L
Sbjct: 166 KVQVIIATPGRILDLMDKEVANMANCRMLVLDEADKLLSQDFKGMLDHVIMKLPKERQIL 225

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++     F++   R           T++           ++       L S
Sbjct: 226 LFSATFPLSVKN----FMEKHLREPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFS 281

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+    IH  + Q  R ++  +F+ G  + +V 
Sbjct: 282 KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMQQAHRNRVFHDFRSGLCRNLVC 341

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           SDL  RG+D+  V  V NFD P  AE Y+HRIGR+GR G 
Sbjct: 342 SDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGH 381


>gi|148997163|ref|ZP_01824817.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|168575420|ref|ZP_02721356.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           MLV-016]
 gi|307067364|ref|YP_003876330.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           AP200]
 gi|147756863|gb|EDK63903.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|183578611|gb|EDT99139.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           MLV-016]
 gi|306408901|gb|ADM84328.1| Superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           AP200]
          Length = 447

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 201/452 (44%), Gaps = 43/452 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +   +  +
Sbjct: 61  QQLDEASDSVQAV---ITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T             
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  +    +
Sbjct: 237 --TQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKLI-------------------------EKKVDWLNGDLSSL---------NPPLE 383
             +EKL                          EKK D L+ ++  L             +
Sbjct: 355 RELEKLEIKFSPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKKKKVKPGYKK 414

Query: 384 KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           KI  A     RK      ++ G   RK    +
Sbjct: 415 KIQWAVDEKRRKTKRAENRARGRAERKAKRQT 446


>gi|326942068|gb|AEA17964.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 411

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 121/378 (32%), Positives = 205/378 (54%), Gaps = 12/378 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L 
Sbjct: 5   TFTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLN 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNF----EKYGKNYNLTVALLIGGIPFEAQNK 117
            +   R  V++    I  PTRELA Q+ +      +   ++  +T   LIGG   +   +
Sbjct: 65  RINASREEVQLV---ITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIE 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P  
Sbjct: 122 KLKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKN 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +     +    L  
Sbjct: 182 LQMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKH---RNKIDLVN 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q      ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 239 KMLLQFKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|294497160|ref|YP_003560860.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
 gi|294347097|gb|ADE67426.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
          Length = 401

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 99/358 (27%), Positives = 181/358 (50%), Gaps = 7/358 (1%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P +  A   AG+ +PT IQ K I  +L   DV G + TGTGKT +++LP+L  ++ G 
Sbjct: 8   LQPFLQEAWKKAGFNEPTAIQTKAISEILANKDVIGESPTGTGKTLAYLLPVLHRIQPG- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
                 + +IL  + EL  Q+    + + +   ++ A  IGG   + Q +KL++  ++++
Sbjct: 67  --PSHIQAVILASSHELVMQIHGEIQTWSQGSGISSAAFIGGANMKRQLEKLKKRPNIIV 124

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+ +     KL M+ ++ +VIDEAD++        +Q I  +    RQ L+FSAT+
Sbjct: 125 GTPGRLNELIKMKKLKMHEVKTIVIDEADQLFVPEHFQTVQQIVKMALSDRQILVFSATV 184

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
           ++  + ++++ + +P  IEV       E         Y +   +  +       +     
Sbjct: 185 SERTKSLAKDMMNHPLEIEVGR----DELPASKVEHVYIKSEARDKVDVLRKLVRQEQMK 240

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            + F      ++     L  +     ++H    +  R   +  F++G   +++A+D+AAR
Sbjct: 241 ALAFFKGIDTLIEFEEKLTFKRVEAGSLHSETKKEDRATTIKGFRKGDFPVLLATDVAAR 300

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           GLDI  + HV + DVP  A+ Y+HR GRTGR+G  G   +LV + + +++  I + ++
Sbjct: 301 GLDIKGLTHVIHIDVPQDADQYVHRSGRTGRSGAEGTVISLVTEREERNLKQIARELQ 358


>gi|242069203|ref|XP_002449878.1| hypothetical protein SORBIDRAFT_05g024780 [Sorghum bicolor]
 gi|241935721|gb|EES08866.1| hypothetical protein SORBIDRAFT_05g024780 [Sorghum bicolor]
          Length = 688

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 130/400 (32%), Positives = 208/400 (52%), Gaps = 28/400 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           ++   L  K++ AV +AGY KP+PIQ+  IPL LQ+ D   +A+TG+GKTA+F LP+L+ 
Sbjct: 275 WSKSKLGAKLLRAVDEAGYRKPSPIQMAAIPLGLQQRDAIAVAETGSGKTAAFALPLLSY 334

Query: 63  -----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEA 114
                      R   P  L++ PTREL+ Q+A+   +  +   + V  + GG        
Sbjct: 335 VAGLPPITDENRHDGPYALVMVPTRELSEQIAEETARLARYLGVRVVPVFGGGSEKTIAE 394

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY-------- 166
           Q++++++G +V++ TPGR+LD   R  +++N    +V+DEADRM+DMGF P         
Sbjct: 395 QSERIQKGCEVVVATPGRLLDLLERRYVVLNQCNYVVLDEADRMIDMGFEPQVASVLAVM 454

Query: 167 ---------IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
                               R T +FSATM   +++++  +L+NP  + + TP    E I
Sbjct: 455 PSSNLKPQNEDEELDEKKVYRTTFMFSATMPPAVERLARTYLRNPVVVTIGTPGKATELI 514

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                        +       L      K  I+FCN KK      + L+  GF V A+HG
Sbjct: 515 ---TQNVMMLKESEKMPQLHRLLRDLRDKTVIVFCNTKKTTDWCFNELKNAGFGVTALHG 571

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           N+ Q  R   L  F+     ++VAS++AARG++IPDV HV N+D+P+    YIH IGRTG
Sbjct: 572 NLTQAERKASLDGFRNRQFNVLVASEVAARGINIPDVAHVINYDMPSSINKYIHCIGRTG 631

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
           RAG+ G A + +  E+      +++++ +    +  +L+ 
Sbjct: 632 RAGKKGVATSFLTLENTDIFFDLKQMLIQSNSHVPPELAK 671


>gi|77735611|ref|NP_001029501.1| probable ATP-dependent RNA helicase DDX56 [Bos taurus]
 gi|122140173|sp|Q3SZ40|DDX56_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX56; AltName:
           Full=DEAD box protein 56
 gi|74267874|gb|AAI03170.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Bos taurus]
 gi|296488364|gb|DAA30477.1| probable ATP-dependent RNA helicase DDX56 [Bos taurus]
          Length = 546

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 115/493 (23%), Positives = 200/493 (40%), Gaps = 41/493 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +++ AV D G+ +PT IQ K IPL L+  D+   A+TG+GKTA++ +PML +
Sbjct: 9   FEHMGLDHRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-------GIPFEAQ 115
           L   +A   +    +         ++A   +   +      A  I              +
Sbjct: 69  LLHRKATGPVVEQAVRALVLVPTKELARQAQSMIQQLAAYCARDIRVANVSAAEDSASQR 128

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              +E+   V+      +         L +++E+LV+DEAD +   GF   ++++   +P
Sbjct: 129 AVLMEKPDVVVGTPSRILNHLQQDNLKLRDSMELLVVDEADLLFSFGFEEELKSLLCHLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q  L SAT  +++Q + E  L NP  +++             F         K  LL
Sbjct: 189 RIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL+        ++F N  +    L   LE+     C ++G +  RSR  I+S F +G 
Sbjct: 249 YALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGF 308

Query: 296 IQL---------------------------MVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
                                                ARG+D   V  V NFD+P   E 
Sbjct: 309 YDCVIATDAEVLGPPVKGKHRGKGPKRDKASDPEAGVARGIDFHHVCAVLNFDLPPTPEA 368

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHR GRT RA   G   T V   +   +  IE+L+    D     L      +E+I+  
Sbjct: 369 YIHRAGRTARANNPGIVLTFVLPTEQSQLGKIEELL--SGDSGAPVLLPYQFHMEEIEGF 426

Query: 389 QHNHARKNNPIPQKSTGFDR----RKKNYSSQKSHIPLKESEK-ISKLQQDIQENDADSL 443
           ++        + +++    R    +++   S+K     +++ + +  L+ D+  + A   
Sbjct: 427 RYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVK 486

Query: 444 GFRGNMPAFMLPK 456
              GN+P +++P 
Sbjct: 487 PHLGNVPDYLVPP 499


>gi|326634444|pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
 gi|326634446|pdb|3PEX|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
 gi|326634450|pdb|3PEZ|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
           And Adp
          Length = 395

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 99/373 (26%), Positives = 181/373 (48%), Gaps = 17/373 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +LGL+P+++  +    + KP+ IQ + +PL+L     ++   +Q+GTGKTA+F L M
Sbjct: 6   SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           LT +         P+ + L P+RELA Q  +  ++ GK   +T  L++   P   +  K 
Sbjct: 66  LTRV---NPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIV---PDSFEKNKQ 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++      +     +   L      ++ +  + +   G       +   +P   Q
Sbjct: 120 INAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT  D +++ ++  + N   +E+ T     + I+  ++    +  K   L +   
Sbjct: 180 LVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTEL-- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+ + IIF   KK    L   L+ +G  V  +HG++  + R +++ +F+EG  +++
Sbjct: 238 YGVMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPN------RAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           + +++ ARG+DIP V  V N+D+P           YIHRIGRTGR GR G A + V  ++
Sbjct: 298 ITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 357

Query: 354 IKH-IDAIEKLIE 365
             + + AI+K   
Sbjct: 358 SFNILSAIQKYFG 370


>gi|148979305|ref|ZP_01815437.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3]
 gi|145961845|gb|EDK27137.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3]
          Length = 424

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 146/419 (34%), Positives = 217/419 (51%), Gaps = 12/419 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA+L L+ K V A+    + KPT IQ   IP ++   DV  +AQTG+GKT +F LP+L
Sbjct: 1   MSFANLTLNTKTVAALPSQ-FNKPTEIQQAVIPTIVSGRDVLALAQTGSGKTLAFGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++G  +++    L++ PTRELA+QV ++ +      ++    L GG   + Q ++L 
Sbjct: 60  NNIDQGSNKLQA---LVIVPTRELASQVTESLKPIATALSIKTVTLTGGRNADEQQQQLS 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               + I TPGR+L     G+L +     LV+DEADR++DMGF P IQ IT+ +P  RQ+
Sbjct: 117 TAPQIAIATPGRLLALIKSGELELAQCTSLVLDEADRLIDMGFWPDIQAITAALPTKRQS 176

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL   +E  L NPK+I  +  +S  E IE            +  +      
Sbjct: 177 LLFSATLPPELVSQAETLLSNPKKITTHKENSVVEAIEETLYLVNKGSKAQALIALLNQN 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F   K N   L   L K   SV A+HGN  Q  R + L +FK G  ++++
Sbjct: 237 PWP---QVLVFIGAKDNADALTKRLNKAKISVSALHGNKSQEERAQALDSFKNGDTRVLI 293

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+ I  +  V NF++P  A  Y+HR+GRT RAG  G A +LV+  +  ++ AI
Sbjct: 294 ATDVMARGIHIDQLPIVINFELPPHAATYVHRVGRTARAGSTGCAISLVSHSETDYLTAI 353

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
             L  K +      L SL         A    ARK  P  + +     +KK+    KS 
Sbjct: 354 RTLTNKTLP-----LQSLEGFPVTDKPASETTARKRPPKDKMANRRTAKKKSVKQFKSK 407


>gi|302792411|ref|XP_002977971.1| hypothetical protein SELMODRAFT_176623 [Selaginella moellendorffii]
 gi|300153992|gb|EFJ20628.1| hypothetical protein SELMODRAFT_176623 [Selaginella moellendorffii]
          Length = 591

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 111/494 (22%), Positives = 197/494 (39%), Gaps = 41/494 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL+ ++  A+ +    +PT +Q   IP +L   +V   + TG+GKT +++LP++ 
Sbjct: 102 SFDELGLAEELRGAIEELDLKEPTEVQRMAIPAILDGENVVVASHTGSGKTLAYMLPLVQ 161

Query: 62  ILEKGRAR------------------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV 103
           +      R                  V  P   + E         +     +  +     
Sbjct: 162 VYFIPCLRKDEIESGRTVRARKPRALVLCPTRELTEQVLIFFYSRSLQKHSFCHHARFRS 221

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163
           A++ GG     Q   L    D+++ TPGR+L H   G L   +I+ +VIDEAD M D GF
Sbjct: 222 AMISGGFRPRPQADALNGALDMVVGTPGRLLMHVEEGNLAFGDIKYVVIDEADTMFDRGF 281

Query: 164 IPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
            P ++ I   +                +QK+ +      + I  +T     +T  H F  
Sbjct: 282 GPELKKIIDPLRNRALRNGSDFQTILSVQKLLDTEFPGIRHIFTSTLHKKVDTSRHFFQK 341

Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
                +K  AL+Q L  +       ++FC    +   + H L +        HG +    
Sbjct: 342 VPGNINKLEALVQVLEPALAKGSRCMVFCRSVDSCRAVDHYLNEMDVHCVNYHGEVPAED 401

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIP---DVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           R+K L+ FK    +  V + +            V HV NFD P+ + +Y+HR GRT R G
Sbjct: 402 RIKNLAKFKIEDGEGPVPALICTDLAARGLDLQVDHVINFDFPSTSIDYLHRSGRTARMG 461

Query: 341 RHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
             G+  +LV K ++   + +E  + +     N  L  ++   E++       AR      
Sbjct: 462 LKGRVTSLVTKRELALANRLEDAMRR-----NETLEGVSLERERV-----LGARMRALKS 511

Query: 401 QKSTGFDR-RKKNYSSQK---SHIPLKESEKISKLQQDIQENDADSLGF------RGNMP 450
           +    FDR   K  + +K     + + +++     +++ ++  A  +        RG   
Sbjct: 512 RYKEAFDRAAAKGVNLEKVGTRALAMAKAKARRIWEKECRKKFASKVTKTGLSKTRGRTK 571

Query: 451 AFMLPKNRGKLNDK 464
           A +  + R K   K
Sbjct: 572 ALIRAERRRKFMAK 585


>gi|293365070|ref|ZP_06611787.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           oralis ATCC 35037]
 gi|307702221|ref|ZP_07639181.1| DEAD/DEAH box helicase family protein [Streptococcus oralis ATCC
           35037]
 gi|291316520|gb|EFE56956.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           oralis ATCC 35037]
 gi|307624234|gb|EFO03211.1| DEAD/DEAH box helicase family protein [Streptococcus oralis ATCC
           35037]
          Length = 447

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 202/452 (44%), Gaps = 43/452 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKKFQFKNYIAEALEELKFSTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +   +  +
Sbjct: 61  QQLDETSDSVQAV---ITAPSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +          
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYEL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 237 --TQAMQPYLAMIFVNTKTRADELHTYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL-------------------------IEKKVDWLNGDLSSL---------NPPLE 383
             +EKL                          EKK D L+ ++  L             +
Sbjct: 355 RELEKLGIKFTPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKKKKVKPGYKK 414

Query: 384 KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           KI  A     RK      ++ G   RK    +
Sbjct: 415 KIQWAVDEKRRKTKRAENRARGRAERKAKRQT 446


>gi|332366381|gb|EGJ44132.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK355]
          Length = 447

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 129/451 (28%), Positives = 204/451 (45%), Gaps = 12/451 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +  +   +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKIKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-- 118
            +L++    V+     I  P+RELAAQ+     +        + +       +   +   
Sbjct: 61  QMLDEEADSVQAV---ITAPSRELAAQIYQAARQLASFSEREIRVANYVGGTDKARQIGK 117

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTI---ENWLLSTKGRDKNAQIY 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             +EK+  K +  +  D        ++   A    +R+            ++KK     K
Sbjct: 355 RELEKMGIKFIPKMIKD-DEFQDTYDRDRRANREKSREKLDTEMLGLVKKKKKKIKPGYK 413

Query: 418 SHIPL--KESEKISKLQQDIQENDADSLGFR 446
             I     E  + +K  ++     A+    R
Sbjct: 414 KKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|315055381|ref|XP_003177065.1| ATP-dependent RNA helicase DBP8 [Arthroderma gypseum CBS 118893]
 gi|311338911|gb|EFQ98113.1| ATP-dependent RNA helicase DBP8 [Arthroderma gypseum CBS 118893]
          Length = 528

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 128/430 (29%), Positives = 208/430 (48%), Gaps = 16/430 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL+P +V ++      +PT IQ   IP +++  D  G ++TG+GKT +F  P+L 
Sbjct: 100 SFASLGLAPWLVSSLKAMEIKRPTAIQKSCIPEIIKGRDCIGGSRTGSGKTVAFAAPILH 159

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                 A       +IL PTRELA Q+ +  +      +L   L+ GG     Q   L +
Sbjct: 160 KW---SADPFGIYAVILTPTRELALQIFEQVKAISAPQSLKPLLITGGSDMRPQAIGLSQ 216

Query: 122 GADVLICTPGRILDHFN----RGKLLMNNIEILVIDEADRMLDMG---FIPYIQNITSLV 174
              ++I TPGR+ DH         + +  + ++V+DEADR+L  G    +P ++   S +
Sbjct: 217 RPHIVIATPGRLADHIKSSGEDTIIGLKRVRMVVLDEADRLLTSGPGSMLPDVETCLSAL 276

Query: 175 PFTRQTLL--FSATMTDELQ----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
           P +       F+AT+T E++                 E++T ++T               
Sbjct: 277 PASTDRQTLLFTATVTPEVRALKSMPRAKNRPPIFVTEISTENTTIPPTLKQTYLQVPLN 336

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            ++  L   L    ++ K+ IIFCN+ K    L   L +    V ++H  + Q  R+  L
Sbjct: 337 HREAFLHVLLSTEGNSSKSTIIFCNRTKTADLLERILRRLSHRVTSLHSLLPQSERIANL 396

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           S F+    +L+VA+D+AARGLDIP VG V N+DVP   ++YIHR+GRT RAGR G+A TL
Sbjct: 397 SRFRASAARLLVATDVAARGLDIPSVGLVINYDVPRNPDDYIHRVGRTARAGREGEAITL 456

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           V + D++ + AIE  + K++        ++   + K  + +   + K   + +   G D 
Sbjct: 457 VGQRDVQLVMAIEARVGKQMLAWEEPGVNIESRIVKGTVLKEVGSTKREAMGEIDEGRDV 516

Query: 409 RKKNYSSQKS 418
             +     K 
Sbjct: 517 LGRRVRKLKK 526


>gi|168042093|ref|XP_001773524.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675226|gb|EDQ61724.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 619

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 132/398 (33%), Positives = 213/398 (53%), Gaps = 17/398 (4%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
            LG+S  +V A+   G     PIQ   +   ++  D+   A+TGTGKT +F +P++  + 
Sbjct: 8   SLGVSEDIVEALAKRGITHLFPIQRAVLEPAMKGQDLIARAKTGTGKTLAFGIPIIRHIV 67

Query: 65  KGR-----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            G       + R PR L+L PTRELA QV   F +      L+   + GG+P   Q ++L
Sbjct: 68  DGNAENAPRQGRSPRALVLAPTRELAKQVEREFMESAP--MLSTVCVYGGVPISMQQRQL 125

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+ + TPGRI+D  +RG L + ++  LV+DEAD+ML +GF   ++ I   +P  RQ
Sbjct: 126 ERGVDIAVGTPGRIIDLIDRGSLKLKDVHFLVLDEADQMLAVGFEEDVERILQQLPKQRQ 185

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           ++LFSATM   ++++S  +L  P  I++   S          +A     S K ++L  L+
Sbjct: 186 SMLFSATMPKWVKELSRKYLNKPLTIDLVGDSDEKLADGIKNLAIQLPASAKRSILSDLI 245

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    I+F   K++  ++  +      S  A+HG+I Q  R K LS F++G I ++
Sbjct: 246 TVHGKGGKTIVFTQTKRDADDVAMA-MGNLVSCGALHGDISQVQREKTLSAFRDGKIAVL 304

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+P+V  V ++++PN +E ++HR GRTGRAGR G    +   + ++ +  
Sbjct: 305 VATDVAARGLDVPNVDLVIHYEIPNDSETFVHRTGRTGRAGRSGTNILMFTSQQVRTMRT 364

Query: 360 IEKLIEKKV---------DWLNGDLSSLNPPLEKIDIA 388
           IE  ++ K          D +      +   LE +D +
Sbjct: 365 IENNVKCKFQIVGLPHVRDVMRASFEQVKGALENVDAS 402


>gi|45198439|ref|NP_985468.1| AFL080Wp [Ashbya gossypii ATCC 10895]
 gi|74693084|sp|Q755A5|DBP3_ASHGO RecName: Full=ATP-dependent RNA helicase DBP3
 gi|44984326|gb|AAS53292.1| AFL080Wp [Ashbya gossypii ATCC 10895]
          Length = 535

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 112/408 (27%), Positives = 195/408 (47%), Gaps = 6/408 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ L L   +   +    + KPTPIQ  + P +L   DV G+A+TG+GKT +F +P +
Sbjct: 125 LSFSHLNLHSAIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGVAETGSGKTFAFGVPAI 182

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   ++  R  + L++ PTRELA+Q+ DN  +      L    + GG+  ++Q ++L+
Sbjct: 183 NSLMSEKSTPRGVKCLVISPTRELASQIYDNLVQLTDKVGLNCCCVYGGVQKDSQREQLK 242

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V+      +         L     +++ +    +         + I       RQT
Sbjct: 243 KAQVVVATPGRLLDLIEEGSAKLAGVQYLVLDEADRMLEKGFEEDIKRIIKETKSDVRQT 302

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL----Q 236
           L+F+AT   E+++++  F++ P ++ +      +       V       KK   L    +
Sbjct: 303 LMFTATWPKEVRELASTFMRAPVKVSIGNRDELSANKRITQVVEVIDPFKKEKRLLELLK 362

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q           +IF   KK    +  +L+  G++V AIHG++ Q+ R + LS FK GT 
Sbjct: 363 QYQSGAKKNDKVLIFALYKKEASRVERNLKYNGYNVAAIHGDLSQQQRTQALSEFKAGTA 422

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L++A+D+AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG  G A TL  +++   
Sbjct: 423 NLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGATGVAHTLFTEQEKHL 482

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
             A+  ++      +  +L       ++ +   +    KN  + +K+ 
Sbjct: 483 AGALVNVLNGAGQPVPEELMKFGTHTKRKEHNAYGAFYKNVDLTKKAK 530


>gi|85107031|ref|XP_962298.1| hypothetical protein NCU07712 [Neurospora crassa OR74A]
 gi|74696531|sp|Q7S9J4|DBP10_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-10
 gi|28923900|gb|EAA33062.1| hypothetical protein NCU07712 [Neurospora crassa OR74A]
          Length = 934

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 128/398 (32%), Positives = 211/398 (53%), Gaps = 33/398 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ K IPL+L+R DV G+A+TG+GKTA+FV+PM+  
Sbjct: 101 FQAMGLNAHLLRAITRKGFSVPTPIQRKAIPLILERKDVVGMARTGSGKTAAFVIPMIER 160

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    RV   R LI+ P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 161 LKGHSPRVGS-RALIMSPSRELALQTLKVVKELGRGTDLKTVLLVGGDSLEEQFGMMASN 219

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L + +I+ +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 220 PDIIIATPGRFLHLKVEMNLSLASIKYVVFDEADRLFEMGFATELTEILHALPPSRQTLL 279

Query: 183 FSATMTDELQKVSENFLQNP--------------------------------KRIEVNTP 210
           FSAT+   L + +   LQ P                                  +     
Sbjct: 280 FSATLPSSLVEFARAGLQEPSLVRLDAETKVSPDLESAFFAVKGGEKEGALLHLLHDVIK 339

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
                       +   Q  K+    +   + + T  + IIF   K +V  + + L+  GF
Sbjct: 340 VPLGPPEGTKEESDELQARKRKREYRPNPKEKPTEYSTIIFTATKHHVEYIANLLKLAGF 399

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           +V  ++G++DQ +R+  + NF+ G   ++V +D+AARG+D+P + +V N+D P++ + ++
Sbjct: 400 AVSYVYGSLDQTARLIQVDNFRRGRTHILVVTDVAARGIDMPALANVINYDFPSQPKIFV 459

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           HR+GRT RAG+ G A+ LV + D+ ++  ++  + +K+
Sbjct: 460 HRVGRTARAGQRGWAYGLVRQSDVPYLLDLQLFLGRKL 497


>gi|315640866|ref|ZP_07895965.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           italicus DSM 15952]
 gi|315483405|gb|EFU73902.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           italicus DSM 15952]
          Length = 449

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 190/366 (51%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F      P +  A+ D G+V PT +Q K IP++ +   + G +QTG+GKT +F+LP+ 
Sbjct: 1   MLFTSFAFQPYIQTALADKGFVHPTEVQEKLIPIISKGKSLIGQSQTGSGKTHTFLLPLF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNK 117
             ++  +  V++    I  P+RELA+Q+    ++        + ++            ++
Sbjct: 61  DKVQPEKNEVQVV---ICAPSRELASQIYQEAKQLASFSETEIRVMNFVGGTDKKRQVDR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              +   V+I TPGRILD  N   L ++     V+DEAD  LDMGF+P +  I +     
Sbjct: 118 IANQQPQVVIGTPGRILDMINEQALQIHTAFAFVVDEADMALDMGFLPEVDQIAAKFSED 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+ ++L+   + ++QNP   E+ + +  +++I        +   K  + L  
Sbjct: 178 IQFLVFSATIPEKLRPFLKKYMQNPVIEEIASKTVISDSI---DNWLISTKGKNTSHLVY 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L +       I+F N K+ V  + + L++Q   V  IHG+I  R R +++   +    Q
Sbjct: 235 QLLTVGHPYLAIVFANTKQRVNEIANYLKEQDLKVATIHGDISPRERKRVMKQVQNMEFQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N ++P+  + +IHR+GRTGR    G A TL        I
Sbjct: 295 YVVATDLAARGIDIEGVSHVINAEIPDDLDFFIHRVGRTGRNQLSGIAITLYDPSQEPQI 354

Query: 358 DAIEKL 363
           +AIE L
Sbjct: 355 EAIEAL 360


>gi|242046786|ref|XP_002461139.1| hypothetical protein SORBIDRAFT_02g041390 [Sorghum bicolor]
 gi|241924516|gb|EER97660.1| hypothetical protein SORBIDRAFT_02g041390 [Sorghum bicolor]
          Length = 546

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 105/398 (26%), Positives = 188/398 (47%), Gaps = 15/398 (3%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F +L    G    +V  +   G+ +PTPIQ + +P++L   +    A TG+GKT +F+ 
Sbjct: 149 SFEELISRYGCDSYLVGNLSKLGFQEPTPIQRQAMPILLSGRECFACAPTGSGKTLAFLF 208

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           P+L  ++ G       + +IL PTRELAAQ     +K  K     + L+   +       
Sbjct: 209 PLLMKIKPG--SKGGVKAVILCPTRELAAQTVRECKKLIKGRKYYIKLMTKELSK--SGN 264

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             +   D+L+ TP R+     +  L ++++E LV+DE+D++ ++GF+  + ++       
Sbjct: 265 FKDMHCDILVSTPLRLDHAVKKRDLDLSSVEYLVLDESDKLFELGFVEVVDSVVEACSNP 324

Query: 178 RQTLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
                 FSAT+ D ++ ++   + +  R+ V   +S +  I+   +    +  K  A   
Sbjct: 325 SIIRSLFSATLPDSIEALARTIMHDAIRVIVGRKNSASSLIKQKLIFAGTERGKLLA--L 382

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +    +      +IF   K+    L   L      V AIH +++++ R   + N + G  
Sbjct: 383 RQSFQESLNPPVLIFVQSKERAKELYKELAFDDVRVDAIHADLNEQQRQDAVDNLRAGKT 442

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+++ ARG+D   V  V N+D P  A  YIHRIGR GRAGR G+A T   +ED   
Sbjct: 443 WVLIATEVIARGMDFKGVNCVINYDFPESAAAYIHRIGRCGRAGRFGEAITFFTEEDKPF 502

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           +  I  ++      +   + +L     K+   +H   R
Sbjct: 503 LRNIANVLVSSGCEVPSWIMALP----KLKRKKHRVDR 536


>gi|221107105|ref|XP_002164714.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 367

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 106/340 (31%), Positives = 173/340 (50%), Gaps = 7/340 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGKT ++++P+L 
Sbjct: 34  EFEDYCLKRELLMGIFEKGFEKPSPIQEQSIPIALAGRDIMARAKNGTGKTGAYLIPLLE 93

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + L+L PTRELA Q +   +    +    V + +GG   +    +L +
Sbjct: 94  RVDST---KDYIQALVLVPTRELALQTSQICKDLSNHLGTKVMVTLGGTSLKDDIMRLYQ 150

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGRILD   +G   M+  +ILV+DEAD++L M F   + ++  ++P  RQ L
Sbjct: 151 TVHVVVATPGRILDLMKKGVADMSKCQILVMDEADKLLSMDFKKLLDSLIQMLPENRQVL 210

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L+SAT    +++    F                 T++           K+       L S
Sbjct: 211 LYSATFPYSVKE----FKDKYLSKPYEINLMDELTLKGITQYYAFVEEKQKVHCLNTLFS 266

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   IIFCN  + V  L   + + G+S   IH  + Q  R ++  +F+ G  + +V 
Sbjct: 267 KLQVNQSIIFCNSVQRVELLARKITQLGYSCFYIHSRMQQSHRNRVFHDFRSGQCRNLVC 326

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR+GR G 
Sbjct: 327 SDLFTRGIDIQAVNVVINFDFPKNSETYLHRIGRSGRFGH 366


>gi|332091754|gb|EGI96834.1| ATP-independent RNA helicase dbpA [Shigella boydii 5216-82]
          Length = 457

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 126/383 (32%), Positives = 204/383 (53%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-E 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G       +   +
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQLFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN +K+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTQKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSTRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++  ++W    ++S   PLE
Sbjct: 357 SDMLQITLNWQTPPVNSSIVPLE 379


>gi|155966195|gb|ABU41052.1| eukaryotic translation initiation factor 4A [Lepeophtheirus
           salmonis]
          Length = 413

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 195/377 (51%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   G+ KP+ IQ + I   ++  D    AQ+GTGKTA+F + +L 
Sbjct: 41  SFDDMNLKEDLLRGIYSFGFEKPSAIQQRAIVPCIKTRDAIAQAQSGTGKTATFSIAILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    R +    LIL PTRELA Q+       G     T    IGG    +  + LE 
Sbjct: 101 KIDISMNRTQA---LILAPTRELAQQIQKVVLSLGDFLKATCYACIGGRSISSDIRALEH 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D   R  L   NI++ V+DEAD ML  GF   I ++   +    Q +
Sbjct: 158 GPHIVVGTPGRVFDMITREHLRTENIKMFVLDEADEMLSRGFKEQIYDVFRHLNQDIQVV 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM D++  V++ F+++P RI V     T E I   +V    +  K   L       
Sbjct: 218 LMSATMPDDVLDVTKRFMRDPIRILVRKEELTLEGILQFYVFVEKEEWKLSTLCDL--YE 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   +  + F+  ++HG + Q  R  I+  F+ G+ ++++ 
Sbjct: 276 TLTITQAVIFCNTRRKVCWLTEKMGLKHFTCSSMHGEMSQEEREVIMREFRSGSSRVLIT 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  +  V N+D+P   ENYIHRIGR GR GR G A   + + D   +  IE
Sbjct: 336 TDLLARGIDVQQISLVINYDLPVNKENYIHRIGRGGRFGRKGVAINFITEGDRMALQDIE 395

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    +++ +  D+++L
Sbjct: 396 KHYHTQIEEMPKDVANL 412


>gi|327459301|gb|EGF05647.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK1]
 gi|327490518|gb|EGF22299.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK1058]
 gi|332364598|gb|EGJ42367.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK1059]
          Length = 447

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 126/407 (30%), Positives = 190/407 (46%), Gaps = 20/407 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-- 118
            +L++    V+     I  P+RELAAQ+     +        + +       +   +   
Sbjct: 61  QMLDEEADSVQAV---ITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQIGK 117

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTI---ENWLLSTKGRDKNAQIY 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 235 QISQLLQPYLAMIFVNTKMRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G HG A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLHGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
             +EK +  K            P + K D  Q  + R      +KS 
Sbjct: 355 RELEK-MGIK----------FTPKMIKDDEFQDTYDRDRRANREKSR 390


>gi|237650467|ref|ZP_04524719.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae CCRI
           1974]
 gi|237821903|ref|ZP_04597748.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae CCRI
           1974M2]
          Length = 447

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 201/452 (44%), Gaps = 43/452 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +   +  +
Sbjct: 61  QQLDEASDSVQAV---ITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T             
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  +    +
Sbjct: 237 --TQLMQPYLAMIFVNTKTRADELHSYLTSQGLKVAKIHGDIAPRERKRIMNQVQNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL-------------------------IEKKVDWLNGDLSSL---------NPPLE 383
             +EKL                          EKK D L+ ++  L             +
Sbjct: 355 RELEKLGIKFSPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKKKKVKPGYKK 414

Query: 384 KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           KI  A     RK      ++ G   RK    +
Sbjct: 415 KIQWAVDEKRRKTKRAENRARGRAERKAKRQT 446


>gi|149238155|ref|XP_001524954.1| ATP-dependent RNA helicase DDX18 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152032522|sp|A5E2Z9|HAS1_LODEL RecName: Full=ATP-dependent RNA helicase HAS1
 gi|146451551|gb|EDK45807.1| ATP-dependent RNA helicase DDX18 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 559

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 108/364 (29%), Positives = 178/364 (48%), Gaps = 4/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F     S   + A+ + G+ K T +Q KTIP +L   DV G A+TG+GKT +F+LP + 
Sbjct: 94  SFEKADFSEPTMKAIKEMGFQKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLLPAVE 153

Query: 62  ILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   + + R     +I+ PTRELA Q+     +  + ++ T  ++IGG     +  KL 
Sbjct: 154 LLYSLKIKPRNGTAVIIITPTRELALQIFGVARQLMEYHSQTCGIVIGGADRRQEATKLA 213

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G ++L+ TPGR +    N    +  N++ LVIDEADR+L++GF   ++ I  ++P   +
Sbjct: 214 KGVNLLVATPGRLLDHLKNTQGFVFLNLKALVIDEADRILEIGFEEEMKQIIKILPNEDR 273

Query: 180 TLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             + FSAT T +++ ++   L+         P     T +          S K  LL   
Sbjct: 274 QTMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFS 333

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  I+F +   +V      L      V  +HG   Q+ R      F      +
Sbjct: 334 FLKRNIKKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGI 393

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHI 357
           +V +D+AARGLDIP V  +  FD P+   +YIHR+GRT R     GK+   +   ++  +
Sbjct: 394 LVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTDGKGKSLMFLTPSELGFL 453

Query: 358 DAIE 361
             ++
Sbjct: 454 RYLK 457


>gi|323306983|gb|EGA60267.1| Dbp1p [Saccharomyces cerevisiae FostersO]
          Length = 452

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 135/383 (35%), Positives = 204/383 (53%), Gaps = 19/383 (4%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG------ 66
           +  +  A + KPTP+Q  +IP+V +  D+   AQTG+GKT  F+ P+ T L +       
Sbjct: 1   MENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPSPVP 60

Query: 67  ------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                  +R   P  L+L PTRELA Q+ +   K+     +   ++ GG P   Q ++++
Sbjct: 61  EKAQSFYSRKGYPXALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVD 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF---- 176
           RG D+L+ TPGR+ D   RGK+ + NI+ LV+DEADRMLDMGF P I++I          
Sbjct: 121 RGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSVE 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL+FSAT   ++Q ++ +FL N   + V    ST+E I    +       K   L  
Sbjct: 181 NRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKSALLDL 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
              + +      +IF   K+    L   L  Q F   AIHG+  Q  R + LS FK    
Sbjct: 241 LSAEHKG---LTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVA 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A +     +   
Sbjct: 298 DILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNI 357

Query: 357 IDAIEKLIEKKVDWLNGDLSSLN 379
           +  + +++ +    +   LS L+
Sbjct: 358 VKGLMEILNEANQEVPTFLSDLS 380


>gi|302789171|ref|XP_002976354.1| hypothetical protein SELMODRAFT_104808 [Selaginella moellendorffii]
 gi|300155984|gb|EFJ22614.1| hypothetical protein SELMODRAFT_104808 [Selaginella moellendorffii]
          Length = 489

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 106/364 (29%), Positives = 177/364 (48%), Gaps = 5/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  L LS     A+ + G+   T IQ ++IP +L+  DV G A+TG+GKT +F++P +
Sbjct: 1   MKFGALPLSEPTKNAIAEIGFTNMTEIQSRSIPELLKGRDVLGAARTGSGKTLAFLVPAV 60

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK- 118
            +L   R   R    + I+ PTRELA Q+     K  K+++ T  +++GG+    + +  
Sbjct: 61  ELLYHARFMPRNGTGVLIISPTRELAMQIYGVARKLMKHHSQTHGIVMGGVKRNVEAEAL 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +    ++      +    N    L  N++ LVIDEADR+L++GF   ++ I  L+P  R
Sbjct: 121 KKGVNLLVSTPGRLLDHLQNTKGFLFKNLQCLVIDEADRILEIGFEEDMKQIIKLLPKER 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT T +++ +++   +            +  T+E          + K  LL   
Sbjct: 181 QTVLFSATQTTKVEDLAKLSFKKAPIYIGVDDERSKATVEGLEQGYCVVKTDKRFLLLFT 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  ++F +   +V      L         IHG   Q+ R      F      +
Sbjct: 241 FLKKNLKKKVMVFFSSCNSVKFHGELLNFIDIPCLDIHGKQKQQKRTNTYFEFCNAEKGI 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIKH 356
           ++ +D+AARGLDIP V  +  +D P+  + YIHR+GRT R   GR G+A   +  E++  
Sbjct: 301 LLCTDVAARGLDIPAVDWIIQYDPPDDPKEYIHRVGRTARGESGR-GRALLFLTPEELGF 359

Query: 357 IDAI 360
              +
Sbjct: 360 KRYL 363


>gi|297521633|ref|ZP_06940019.1| ATP-dependent RNA helicase DbpA [Escherichia coli OP50]
          Length = 457

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 132/398 (33%), Positives = 212/398 (53%), Gaps = 13/398 (3%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDW----LNGDLSSLNPPLEKIDIAQHNHAR 394
             +++ K++W     N  +++L   +  + I     A+
Sbjct: 357 SDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAK 394


>gi|255072735|ref|XP_002500042.1| predicted protein [Micromonas sp. RCC299]
 gi|226515304|gb|ACO61300.1| predicted protein [Micromonas sp. RCC299]
          Length = 523

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 209/389 (53%), Gaps = 9/389 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + + P+V  A+   GY  PTPIQ K IP+ L   DV  +A+TG+GKTA+F++P+L  
Sbjct: 73  FESMDILPEVFRAIKRKGYRIPTPIQRKAIPVALSGADVVAMARTGSGKTAAFLIPVLHK 132

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +   +    R ++L PTRELA Q     ++  K  +L    ++GG   EAQ   L   
Sbjct: 133 LRQHSLKAGA-RAVVLSPTRELALQTYKFAQELSKFTDLRCVCVVGGDSMEAQFDDLASN 191

Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D+L+ TPGR+L H        + ++  +V+DEADR+L+MGF   +++I   V   RQ L
Sbjct: 192 PDLLVATPGRLLHHVEEISGFSIRSVSHVVLDEADRLLEMGFADQLRDIMKQVADQRQCL 251

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   L +     L++P+ I ++     +  +         Q  K  +LL  L + 
Sbjct: 252 LFSATMPSALAEFVRVGLKDPQVIRLDAEMKVSPDL-KLSFTVMRQDEKIPSLLFFLREV 310

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  ++F   + +V  L   LE +G +V A++G++D  +R   +  F+     +MV 
Sbjct: 311 VPENQQTVVFTATRHHVELLVTVLESEGITVSAVYGSMDMAARKLHIGKFRNRKTSVMVV 370

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP + +V NFD P R + ++HR+GR  RAGR G A +L+ KE++  +  + 
Sbjct: 371 TDVAARGIDIPLLDNVVNFDFPPRPKLFVHRVGRVARAGRTGVAHSLLVKEEMGFLVDLH 430

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
             + + +      +++   P E  D A+ 
Sbjct: 431 LFLGRSL------VAAPVKPPESRDEARQ 453


>gi|16129304|ref|NP_415859.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89108191|ref|AP_001971.1| ATP-dependent RNA helicase specific for 23S rRNA [Escherichia coli
           str. K-12 substr. W3110]
 gi|157160855|ref|YP_001458173.1| ATP-dependent RNA helicase DbpA [Escherichia coli HS]
 gi|170020291|ref|YP_001725245.1| ATP-dependent RNA helicase DbpA [Escherichia coli ATCC 8739]
 gi|170081022|ref|YP_001730342.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188494462|ref|ZP_03001732.1| ATP-independent RNA helicase DbpA [Escherichia coli 53638]
 gi|194436972|ref|ZP_03069071.1| ATP-independent RNA helicase DbpA [Escherichia coli 101-1]
 gi|238900578|ref|YP_002926374.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           BW2952]
 gi|253773655|ref|YP_003036486.1| ATP-dependent RNA helicase DbpA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161422|ref|YP_003044530.1| ATP-dependent RNA helicase DbpA [Escherichia coli B str. REL606]
 gi|256022943|ref|ZP_05436808.1| ATP-dependent RNA helicase DbpA [Escherichia sp. 4_1_40B]
 gi|300927858|ref|ZP_07143420.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|300948429|ref|ZP_07162531.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300954597|ref|ZP_07167042.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|301022682|ref|ZP_07186535.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|301647156|ref|ZP_07246977.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|307137985|ref|ZP_07497341.1| ATP-dependent RNA helicase DbpA [Escherichia coli H736]
 gi|312971541|ref|ZP_07785716.1| ATP-independent RNA helicase dbpA [Escherichia coli 1827-70]
 gi|331641910|ref|ZP_08343045.1| ATP-independent RNA helicase DbpA [Escherichia coli H736]
 gi|416881|sp|P21693|DBPA_ECOLI RecName: Full=ATP-independent RNA helicase dbpA
 gi|1742212|dbj|BAA14946.1| ATP-dependent RNA helicase specific for 23S rRNA [Escherichia coli
           str. K12 substr. W3110]
 gi|1787605|gb|AAC74425.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           str. K-12 substr. MG1655]
 gi|157066535|gb|ABV05790.1| ATP-independent RNA helicase DbpA [Escherichia coli HS]
 gi|169755219|gb|ACA77918.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
 gi|169888857|gb|ACB02564.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188489661|gb|EDU64764.1| ATP-independent RNA helicase DbpA [Escherichia coli 53638]
 gi|194423955|gb|EDX39943.1| ATP-independent RNA helicase DbpA [Escherichia coli 101-1]
 gi|238860048|gb|ACR62046.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           BW2952]
 gi|242377119|emb|CAQ31847.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           BL21(DE3)]
 gi|253324699|gb|ACT29301.1| DEAD/DEAH box helicase domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973323|gb|ACT38994.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           B str. REL606]
 gi|253977536|gb|ACT43206.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           BL21(DE3)]
 gi|260449522|gb|ACX39944.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
 gi|299881170|gb|EFI89381.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|300318431|gb|EFJ68215.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|300452053|gb|EFK15673.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300464143|gb|EFK27636.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|301074642|gb|EFK89448.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|309701644|emb|CBJ00951.1| ATP-independent RNA helicase [Escherichia coli ETEC H10407]
 gi|310336138|gb|EFQ01338.1| ATP-independent RNA helicase dbpA [Escherichia coli 1827-70]
 gi|315135984|dbj|BAJ43143.1| ATP-dependent RNA helicase DbpA [Escherichia coli DH1]
 gi|323937669|gb|EGB33937.1| DEAD/DEAH box helicase [Escherichia coli E1520]
 gi|323942290|gb|EGB38461.1| DEAD/DEAH box helicase [Escherichia coli E482]
 gi|323962410|gb|EGB57993.1| DEAD/DEAH box helicase [Escherichia coli H489]
 gi|323973547|gb|EGB68732.1| DEAD/DEAH box helicase [Escherichia coli TA007]
 gi|331038708|gb|EGI10928.1| ATP-independent RNA helicase DbpA [Escherichia coli H736]
 gi|332343042|gb|AEE56376.1| ATP-independent RNA helicase DbpA [Escherichia coli UMNK88]
          Length = 457

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 132/398 (33%), Positives = 212/398 (53%), Gaps = 13/398 (3%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDW----LNGDLSSLNPPLEKIDIAQHNHAR 394
             +++ K++W     N  +++L   +  + I     A+
Sbjct: 357 SDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAK 394


>gi|195146542|ref|XP_002014243.1| GL19047 [Drosophila persimilis]
 gi|194106196|gb|EDW28239.1| GL19047 [Drosophila persimilis]
          Length = 386

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 128/377 (33%), Positives = 204/377 (54%), Gaps = 8/377 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F + +L 
Sbjct: 17  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATFSIAILQ 76

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     VR  + LIL PTRELA Q+       G+    T    IGG       + LE 
Sbjct: 77  QIDTA---VRECQALILAPTRELATQIQRVVMALGE---CTRMPCIGGTNVREDARILES 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L   +I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 131 GCHVVVGTPGRVYDMINRKVLRTQHIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F++ P  I V     T E I+  +V    +  K   L       
Sbjct: 191 LLSATMPPDVLEVSRCFMREPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDL--YD 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   +    F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 249 TLSITQSVIFCNTRRKVDQLTQEMSSHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  +D + +  IE
Sbjct: 309 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIE 368

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 369 QFYHTTIEEMPANIADL 385


>gi|218899452|ref|YP_002447863.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|228902809|ref|ZP_04066954.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis IBL 4222]
 gi|228910119|ref|ZP_04073939.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis IBL 200]
 gi|228967351|ref|ZP_04128386.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|218540620|gb|ACK93014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|228792386|gb|EEM39953.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228849636|gb|EEM94470.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis IBL 200]
 gi|228856818|gb|EEN01333.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis IBL 4222]
          Length = 436

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 114/375 (30%), Positives = 201/375 (53%), Gaps = 6/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L 
Sbjct: 5   TFTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLN 64

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +   R  V+ +      E  +++  ++    +   ++  +T   LIGG   +   +KL+
Sbjct: 65  RINASREEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   Q 
Sbjct: 125 KQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +     +    L   + 
Sbjct: 185 LVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKH---RNKIDLVNKML 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q +V
Sbjct: 242 LQFKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +D++
Sbjct: 302 ATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEALDSL 361

Query: 361 EKLIEKKVDWLNGDL 375
           EK  ++ +++ + DL
Sbjct: 362 EK--QRHIEFKHVDL 374


>gi|158290201|ref|XP_001230842.2| AGAP001057-PA [Anopheles gambiae str. PEST]
 gi|157018265|gb|EAU77138.2| AGAP001057-PA [Anopheles gambiae str. PEST]
          Length = 699

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 122/472 (25%), Positives = 213/472 (45%), Gaps = 27/472 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-L 60
            F D  LS K +  + +A + +PT IQ ++I   +   D+   A+TG+GKT +F++P+  
Sbjct: 18  TFQDFPLSKKTLAGLAEADFTRPTVIQRESILPAIFGKDILAAAKTGSGKTLAFIIPILE 77

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  +   R+     LI+ PTRELA Q+ +   + G++++ T+ LLIGG   + +  +L 
Sbjct: 78  RLFVEKWTRMDGLGALIITPTRELAVQIYETMTQVGRHHDFTIGLLIGGQNLKYERNRLH 137

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++      +            N++ILV+DEADR LDMGF   + +I   +P  RQT
Sbjct: 138 NLNIIIGTPGRLLQHMDQNPLFDTTNLKILVLDEADRCLDMGFSATMDSIIENLPEVRQT 197

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT T+ ++ ++   L NP +I  +     A   +          + K   +     
Sbjct: 198 VLFSATQTNSVRDLARVKLVNPVQIAPHEHEQIATPAKLQQSYVVVDLANKL-TMLWSFL 256

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC---AIHGNIDQRSRMKILSNFKEGTIQ 297
                +  I+F +  K V       +K   +        G   ++         K+ T  
Sbjct: 257 QTHPKQKVIVFFSTCKQVKYFYQVFKKLRPTSLLLPLYGGMNQEKRNKIYGDFCKKKTNV 316

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI-KH 356
            ++A+D+A+RGLD P V  V   D P     YIHR GRT R    G+   ++   ++   
Sbjct: 317 CLLATDVASRGLDFPKVNWVVQIDCPEDVAQYIHRAGRTARLNTSGENLLVLLPHEVDPM 376

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKID--IAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +D++EK  +  +  +  D   L  PL KI   +AQ    +++             K+ + 
Sbjct: 377 LDSLEKN-KIPIKQIKIDERQLFSPLLKIQSLLAQSPELKESA------------KRAFV 423

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFM-----LPKNRGKL 461
           +    I L +++++ +L     +  A+SLG   N P        L + R K+
Sbjct: 424 AYIKSIALMKNKEVFQLHNLNLDEFANSLGL-SNTPRVRFVSRTLERKRSKI 474


>gi|301771123|ref|XP_002920985.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
           DDX19A-like [Ailuropoda melanoleuca]
          Length = 477

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 104/388 (26%), Positives = 174/388 (44%), Gaps = 14/388 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 92  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 151

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      R P+ L L PT ELA Q     E+ GK +               + +K+
Sbjct: 152 LSRVEPAE---RYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKI 208

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 209 SEHIVIGTPGTVLDWCAKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 268

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V    +  K        L
Sbjct: 269 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNRDEK--FQALCNL 326

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L   L K+G  V  + G +    R  ++  F+EG  +++
Sbjct: 327 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 386

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 387 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 446

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNP 380
            +  ++ I++   KK      DL     
Sbjct: 447 SMNILNRIQEHFNKKXRLDTDDLDETEK 474


>gi|167549858|ref|ZP_02343616.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205325031|gb|EDZ12870.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 457

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 137/401 (34%), Positives = 220/401 (54%), Gaps = 10/401 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  RIDVTLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGVQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  +S    Q P RIE++T     + +       +   + +   L Q L 
Sbjct: 181 LLFSATWPEAIAAISGRVQQQPIRIEIDTV----DALPAIEQQFFETSAHEKISLLQTLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN KK+   +C +L   G S  A+HG+++QR R + L  F  G+ +++V
Sbjct: 237 SQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +  A E+ +  + +
Sbjct: 297 ATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANIL 356

Query: 361 EKLIEKKVDWLNGDL-SSLNPPLEKIDIAQHNHARKNNPIP 400
            ++++ K++WLN      L P   ++     +  +K    P
Sbjct: 357 SEMLQLKLNWLNAPARQPLLPLAAEMATLCVDGGKKAKMRP 397


>gi|167525611|ref|XP_001747140.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774435|gb|EDQ88064.1| predicted protein [Monosiga brevicollis MX1]
          Length = 545

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 136/399 (34%), Positives = 212/399 (53%), Gaps = 14/399 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M FAD G+   ++      G+ KPT IQ    P+V+Q  D+ G+A TG+GKT +F LP +
Sbjct: 129 MTFADAGVDADLMA--CTKGFDKPTAIQSCCWPIVVQGQDLVGVAATGSGKTLAFTLPAL 186

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKK 118
             +   GR++   PR L+L PTRELA Q+    +   K+ N   A+ + G      Q   
Sbjct: 187 QHVKGLGRSKTNCPRVLVLSPTRELALQINKVAQDAVKSLNQISAVCVYGGASKRDQLTA 246

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G +++I TPGR++D  N GKL ++++  LV+DEADRMLDMGF   I+ I   V   R
Sbjct: 247 LRQGCELVIATPGRLVDFLNDGKLDLSHVSYLVLDEADRMLDMGFERDIKLILGAVGTQR 306

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL-LQQ 237
           QTL+FSAT  +E++ ++ N+++NP R+ V +   +A       V       K   L    
Sbjct: 307 QTLMFSATWPEEVRAIAANYMKNPLRVTVGSEELSANRNVKQVVDVVEPMEKDRRLLDVL 366

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF   KK    L   L+++ ++V  +HG+++Q  R   L  +K G   
Sbjct: 367 RKHPASKNAKVLIFALYKKEAARLESFLQRKSYNVVGMHGDLNQGQREAALRAYKSGDSH 426

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARGLD+  V  V N+  P   E+Y+HRIGRTGRAG  G A+T   + D  H 
Sbjct: 427 ILIATDVAARGLDVKGVAVVINYTFPLTIEDYVHRIGRTGRAGATGIAYTFFTQHDKAHA 486

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
            A+  ++ +         + +  P   +   QH   +++
Sbjct: 487 GALGNVLRE---------ADVEVPEALMKFGQHTKRKEH 516


>gi|84997373|ref|XP_953408.1| DEAD-box family helicase [Theileria annulata strain Ankara]
 gi|65304404|emb|CAI76783.1| DEAD-box family helicase, putative [Theileria annulata]
          Length = 570

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 130/480 (27%), Positives = 214/480 (44%), Gaps = 43/480 (8%)

Query: 1   MDFADLGLSPKVVC---AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           ++++D GL   ++    A+ + GY  PT IQ K IPL L+  D+  +   G+GKTASF++
Sbjct: 75  LNWSDFGLCRSIMRVGIAISEMGYQNPTIIQSKVIPLALEGKDLLIMMIQGSGKTASFLI 134

Query: 58  PMLTI------------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105
           P L               ++        + L++ PTRELAAQ    F+   K  +    L
Sbjct: 135 PTLQRLVVSGVLKQLTKEKQAYNTRFGTKALVILPTRELAAQCFQVFKSLSKYLSSKAIL 194

Query: 106 LIGGIPFEAQNKK-LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
           L GGIP + Q  +  +    ++      +    N   + + NIE++++DEAD++L++GF 
Sbjct: 195 LTGGIPIKEQENRLRQFPETIICTPGRALDMLINSSSINVENIEVVIMDEADKLLELGFR 254

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
                +       RQT+LFSAT+T+E +++    L NP  ++V+ P+  + T+E      
Sbjct: 255 DECLQVLKYCNRNRQTMLFSATLTEETKELVSLSLVNPVYVKVDDPTKVSRTLEFEM--M 312

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                +        L ++ +    I+F   K++   +             +HGN+ Q  R
Sbjct: 313 MIPKEEYREACALYLCTKYSKDKTILFFQTKRSAHRMFLIFNLLNMKCGELHGNLSQSKR 372

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + +  FK G I  ++AS+LA+RGLDIP V  V N D+P     YIHR+GRT R G HGK
Sbjct: 373 FESVERFKNGEIDYLLASELASRGLDIPGVKTVINVDLPTDITRYIHRVGRTARMGSHGK 432

Query: 345 AFTLVAKEDIKHIDAIEK----------------------LIEKKVDWLNGDLSS--LNP 380
           A TL   E    +    K                        + K+D L   +    L  
Sbjct: 433 AITLYVDEQRSQVKLFLKKTSDIGATLSKNKKKVTSATLNKYKTKIDELEEKIKELLLEE 492

Query: 381 PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDA 440
            +EK DI   +   K +    +      R K      S    +E+ + ++   D ++ + 
Sbjct: 493 NIEK-DIKMCDATLKTHGDQDREKRKWFRSKKDKKMASKEEFEEANRKTQRMVDKEQKNE 551


>gi|315053519|ref|XP_003176133.1| ATP-dependent RNA helicase SUB2 [Arthroderma gypseum CBS 118893]
 gi|311337979|gb|EFQ97181.1| ATP-dependent RNA helicase SUB2 [Arthroderma gypseum CBS 118893]
          Length = 441

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 81/375 (21%), Positives = 148/375 (39%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++ A+ D G+  P+ +Q   IP  +   DV   A++G GKTA F L  L  
Sbjct: 60  FRDFYLKAELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFALTTLHQ 119

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                G   + +         +        +         +           E  + K  
Sbjct: 120 LEPVPGTCSILVMCPTRELAYQIKDEYARFSKYMPDVKTAVFYGGTPIQKDIEILSSKET 179

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++           ++   L N    ++ +    +        +Q I    P  +Q 
Sbjct: 180 HPNIIVGTPGRLNALLRDKKLSLRNIKSFVLDECDKMLDQKDMRADVQEIFRSTPSEKQV 239

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT+  E++ V + F++NP  + V+  +         +    ++  K   L +    
Sbjct: 240 MMFSATLAQEIRPVCKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEAEKNRKLNEL--L 297

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF         L   L +  F   A+H  + Q  R+K    FK+   ++ V
Sbjct: 298 DNLEFNQVIIFVKSTVRATELDKLLRECNFPSIAVHSGVSQEERIKRYREFKDFNKRICV 357

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED-IKHIDA 359
           A+D+  RG+DI  +    N+D+P  A++Y+HR+GR GR G  G + + V+ E+ ++ +  
Sbjct: 358 ATDVFGRGIDIERINLAINYDMPIDADSYLHRVGRAGRFGTKGLSISFVSDEENMQVLKD 417

Query: 360 IEKLIEKKVDWLNGD 374
           IEK  E  +     +
Sbjct: 418 IEKRFEVALPEYPEE 432


>gi|302559847|ref|ZP_07312189.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
 gi|302477465|gb|EFL40558.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
          Length = 538

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 147/447 (32%), Positives = 224/447 (50%), Gaps = 20/447 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L 
Sbjct: 100 TFADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLA 159

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L  GR     PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LER
Sbjct: 160 TLAGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVVGLRMKVVCGGTSMGNQIYALER 219

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+L+ TPGR+ D  NRG   + N++I V+DEAD+M D+GF+P +  +   VP   Q +
Sbjct: 220 GVDILVATPGRLRDIINRGACSLENVQIAVLDEADQMSDLGFMPEVTELLDQVPPGGQRM 279

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +E++ + + +L++P   EV+       T+ H  +       K           
Sbjct: 280 LFSATMENEIKTLVDRYLKDPVSHEVDAAQGAVTTMSHHILVV-----KPKDKAPVTAAI 334

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIF   +     +   L   G    A+HG + Q +R + L++FK+G + ++VA
Sbjct: 335 ASRKGRTIIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLVA 394

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L      +    I 
Sbjct: 395 TDVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLSLPHQRRQ---IF 451

Query: 362 KLIEKK-VDWLNGDL---SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           +L+E   VD     +   ++ +P     ++A+   AR    +  +S G   ++   + ++
Sbjct: 452 RLMEDAGVDATRHIIQGGAAFDP-----EVAEITGARSMTEVQAESAGNAAQQ---AERE 503

Query: 418 SHIPLKESEKISKLQQDIQENDADSLG 444
                KE E+  +   D+++ D   + 
Sbjct: 504 VAQLAKELERAQRRASDLRDEDDRLVA 530


>gi|222639930|gb|EEE68062.1| hypothetical protein OsJ_26071 [Oryza sativa Japonica Group]
          Length = 938

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 119/448 (26%), Positives = 206/448 (45%), Gaps = 45/448 (10%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   GL+ K++  +   G+ KP PIQ + +P+++   D  GIA+TG+GKT +FVLPML 
Sbjct: 295 TWVQSGLTSKLLDTIKKLGFEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLR 354

Query: 62  ILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            ++     V    P  LI+ PTREL  Q+  + +K+ K+  +    + GG     Q  +L
Sbjct: 355 HVKDQPPVVPGDGPIGLIMAPTRELVVQIHSDIKKFAKSLGINCVAIYGGSGVAQQISEL 414

Query: 120 ERGADVLICTPGRILDHFNR---GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +RGA++++CTPGR++D           +  +  LV+DEADRM DMGF P I  I      
Sbjct: 415 KRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNTRP 474

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSA    +++ ++   L  P  I+V   S   +      +      +++   L 
Sbjct: 475 DRQTVLFSAIFPRQVEILARKVLTKPVEIQVGGRSVVNKD--ITQLVEVRPENERFLRLL 532

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +LL         ++F + +    +L   L ++G+   ++HG  DQ  R   L++FK    
Sbjct: 533 ELLGEWFDRGKILVFVHSQDKCDSLLKDLFQRGYPCLSLHGGKDQTDRESTLADFKSN-- 590

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
                                          +Y+HR+GRTG AGR G A T ++ E+ ++
Sbjct: 591 -------------------------------DYVHRVGRTGHAGRKGFAVTFISDEEERY 619

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              + K +E     +  DL  L    ++          + +      +GF   ++   ++
Sbjct: 620 APDLAKALELSEQAVPQDLKGLA---DRFMAKVKQGTEQAHGTGYGGSGFKFNEEEDEAR 676

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLG 444
           +S    +  E     ++D  ++D+D  G
Sbjct: 677 RSAKKAQAREY--GYEEDKSDSDSDEEG 702


>gi|190407384|gb|EDV10651.1| ATP-dependent RNA helicase DDX25 [Saccharomyces cerevisiae RM11-1a]
 gi|207341250|gb|EDZ69357.1| YOR046Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259149529|emb|CAY86333.1| Dbp5p [Saccharomyces cerevisiae EC1118]
 gi|323335582|gb|EGA76866.1| Dbp5p [Saccharomyces cerevisiae Vin13]
 gi|323352404|gb|EGA84939.1| Dbp5p [Saccharomyces cerevisiae VL3]
          Length = 482

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 99/373 (26%), Positives = 181/373 (48%), Gaps = 17/373 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +LGL+P+++  +    + KP+ IQ + +PL+L     ++   +Q+GTGKTA+F L M
Sbjct: 93  SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 152

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           LT +         P+ + L P+RELA Q  +  ++ GK   +T  L++   P   +  K 
Sbjct: 153 LTRV---NPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIV---PDSFEKNKQ 206

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++      +     +   L      ++ +  + +   G       +   +P   Q
Sbjct: 207 INSQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQ 266

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT  D +++ ++  + N   +E+ T     + I+  ++    +  K   L +   
Sbjct: 267 LVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTEL-- 324

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+ + IIF   KK    L   L+ +G  V  +HG++  + R +++ +F+EG  +++
Sbjct: 325 YGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVL 384

Query: 300 VASDLAARGLDIPDVGHVFNFDVPN------RAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           + +++ ARG+DIP V  V N+D+P           YIHRIGRTGR GR G A + V  ++
Sbjct: 385 ITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 444

Query: 354 IKH-IDAIEKLIE 365
             + + AI+K   
Sbjct: 445 SFNILSAIQKYFG 457


>gi|168241214|ref|ZP_02666146.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194447332|ref|YP_002045697.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194405636|gb|ACF65855.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205339660|gb|EDZ26424.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 457

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 133/373 (35%), Positives = 212/373 (56%), Gaps = 9/373 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY++ TP+Q   +P++L  +DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  RIDVTLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGVQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  +S    Q P RIE++T     + +       +   + +   L Q L 
Sbjct: 181 LLFSATWPEAIAAISGRVQQQPIRIEIDTV----DALPAIEQQFFETSAHEKISLLQTLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN KK+   +C +L   G S  A+HG+++QR R + L  F  G+ +++V
Sbjct: 237 SQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +  A E+ +  + +
Sbjct: 297 ATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANIL 356

Query: 361 EKLIEKKVDWLNG 373
            ++++ K++WLN 
Sbjct: 357 SEMLQLKLNWLNA 369


>gi|281182661|ref|NP_001162381.1| ATP-dependent RNA helicase DDX18 [Papio anubis]
 gi|162415904|gb|ABX89268.1| DEAD box polypeptide 18 (predicted) [Papio anubis]
          Length = 670

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 120/392 (30%), Positives = 200/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADL-GL-SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L  L +   + A+ + G+   T IQ K++  +L+  D+   A+TG+GKT +F++P 
Sbjct: 178 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSVRPLLEGRDLLAAAKTGSGKTLAFLIPA 237

Query: 60  LTILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K +   R    + IL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 238 VELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK 297

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 298 LANGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTR 357

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T++          S+K  LL  
Sbjct: 358 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLF 417

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 418 TFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSG 477

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
            ++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 478 TLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELG 536

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + D+    +S +   LEK+
Sbjct: 537 FLRYLKQSKVPLSEFDFSWSKISDIQSQLEKL 568


>gi|145247210|ref|XP_001395854.1| ATP-dependent RNA helicase sub2 [Aspergillus niger CBS 513.88]
 gi|143586076|sp|A2R0B5|SUB2_ASPNC RecName: Full=ATP-dependent RNA helicase sub2
 gi|134080586|emb|CAK41253.1| unnamed protein product [Aspergillus niger]
          Length = 440

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 96/373 (25%), Positives = 162/373 (43%), Gaps = 5/373 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++ A+ D G+  P+ +Q   IP  +   DV   A++G GKTA FVL  L  
Sbjct: 59  FRDFLLKEELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQ 118

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           LE       +       E   ++  + A   +                          E 
Sbjct: 119 LEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVELLSNKES 178

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFIPYIQNITSLVPFTRQT 180
             ++++ TPGR+       KL + N++  V+DE D+M   +     +Q I    P  +Q 
Sbjct: 179 YPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQV 238

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ E++ V + F++NP  + V+  +         +    ++  K   L +    
Sbjct: 239 MMFSATLSQEIRPVCKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEAEKNRKLNEL--L 296

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF         L   L +  F   A+H  + Q  R+K    FKE   ++ V
Sbjct: 297 DSLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICV 356

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           A+D+  RG+DI  +    N+D+P  A++Y+HR+GR GR G  G + + V  ++D K +  
Sbjct: 357 ATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSTEDDEKVLKD 416

Query: 360 IEKLIEKKVDWLN 372
           IEK  E  +    
Sbjct: 417 IEKRFEVALPEYP 429


>gi|328880510|emb|CCA53749.1| ATP-dependent RNA helicase [Streptomyces venezuelae ATCC 10712]
          Length = 472

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 122/359 (33%), Positives = 184/359 (51%), Gaps = 5/359 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L L  +V+  +   G   P PIQ  T+P  L   DV G  +TG+GKT +F LP+L 
Sbjct: 29  SFAELDLPAEVLDVLARLGLDTPFPIQSATLPDALAGRDVLGRGRTGSGKTLAFGLPLLV 88

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                RA  R P  L+L PTRELA QV D  E + +   L +A ++GG+    Q   L  
Sbjct: 89  RAAGRRAESRRPHALVLVPTRELAQQVTDALEPFARALKLRLATVVGGMSIGRQATALRD 148

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+VLI TPGR++D   R    ++ +   V+DEAD+M D+GF+P +  +  LV    Q +
Sbjct: 149 GAEVLIATPGRLMDLVERKDCRLDRVAATVLDEADQMADLGFMPQVTELLDLVRPEGQRM 208

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +  + E +L +P    V+  S+T  T++H  +  +              + 
Sbjct: 209 LFSATLDRNVDLLVERYLADPVVHSVDPSSATVSTMDHHVLHVHGADK-----FATATEI 263

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K  V      L   G    A+HG   Q  R + L  F+ G + ++VA
Sbjct: 264 AARDGRVIMFLATKAAVDRFTKHLLGSGVRAAALHGGKSQPLRTRTLDRFRSGEVPVLVA 323

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV  E+ + +  +
Sbjct: 324 TNVAARGIHVDELDLVVNVDPPADHKDYLHRGGRTARAGESGLVVTLVTPEERRDVARL 382


>gi|225858570|ref|YP_002740080.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           70585]
 gi|225721139|gb|ACO16993.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           70585]
 gi|301793920|emb|CBW36316.1| putative helicase [Streptococcus pneumoniae INV104]
          Length = 447

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 201/452 (44%), Gaps = 43/452 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +   +  +
Sbjct: 61  QQLDEASDSVQAV---ITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLEIVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T             
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  +    +
Sbjct: 237 --TQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL-------------------------IEKKVDWLNGDLSSL---------NPPLE 383
             +EKL                          EKK D L+ ++  L             +
Sbjct: 355 RELEKLGIKFSPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKKKKVKPGYKK 414

Query: 384 KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           KI  A     RK      ++ G   RK    +
Sbjct: 415 KIQWAVDEKRRKTKRAENRARGRAERKAKRQT 446


>gi|168762636|ref|ZP_02787643.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4501]
 gi|189367023|gb|EDU85439.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4501]
          Length = 457

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 127/370 (34%), Positives = 200/370 (54%), Gaps = 9/370 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA  VA       +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADHVASELRPLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDW 370
             +++ K++W
Sbjct: 357 SDMLQIKLNW 366


>gi|84394007|ref|ZP_00992745.1| DNA and RNA helicase [Vibrio splendidus 12B01]
 gi|84375344|gb|EAP92253.1| DNA and RNA helicase [Vibrio splendidus 12B01]
          Length = 412

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 138/418 (33%), Positives = 212/418 (50%), Gaps = 9/418 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L L+ K V A+    + KPT IQ   IP ++   DV  +AQTG+GKT +F LP+L
Sbjct: 1   MSFDNLTLNAKTVTAIPSQ-FDKPTEIQQAVIPSIIAGKDVLALAQTGSGKTLAFGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +      V   + LI+ PTRELA+QV ++ E      N+ +  L GG+  + Q ++L 
Sbjct: 60  NNINH---DVNGLQALIIVPTRELASQVTESLEPVATALNIKLVTLTGGVNTDDQQQQLL 116

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               + I TPGR+L      +L +     LV+DEADR++DMGF P IQ IT+ +P  RQ+
Sbjct: 117 TQPQLAIATPGRLLALIKSSELDVTQCVSLVLDEADRLIDMGFWPDIQAITAALPSKRQS 176

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL   +E  L NP ++  +  +S   TIE            +  +      
Sbjct: 177 LLFSATLPSELVSQAELLLSNPVKVSTHQENSVVATIEETLYLVNKGSKAQALIALLNQH 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       ++F   K N   L   L K   +V A+HGN  Q  R + L +FK G  ++++
Sbjct: 237 TWP---QVLVFIGAKDNADALTKRLNKSKINVSALHGNKSQEEREQALESFKNGETRVLI 293

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+ I  +  V NFD+P  +  Y+HR+GRT RAG  G A +LV+  +  +++AI
Sbjct: 294 ATDVMARGIHIDQLPVVINFDLPTHSATYVHRVGRTARAGSTGCAISLVSHSETDYLNAI 353

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
             L  K +  +   L       +    A        + +  + T   +  K + S+ S
Sbjct: 354 RTLTNKPL--VLQALEGFPVTDKPASEATARKRPPKDKMANRRTAKKKSAKQFKSKPS 409


>gi|307331747|ref|ZP_07610851.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306882613|gb|EFN13695.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 1097

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 144/421 (34%), Positives = 223/421 (52%), Gaps = 22/421 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+ P+   A+   G + P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L 
Sbjct: 37  TFRELGILPETAEALEAVGIMSPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLE 96

Query: 62  I----------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
                        K       P+ L++ PTREL  QV ++    GK   + V  + GG  
Sbjct: 97  RVVVSADVEAGRAKPEQLTDAPQALVVVPTRELCQQVTNDLLTAGKVRAVRVLSIYGGRA 156

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q + L++G DV++ TPGR+LD   + KL +++++ LV+DEAD MLD+GF+P ++ I 
Sbjct: 157 YEPQVEALKKGVDVVVGTPGRLLDLAGQKKLRLSSVKSLVLDEADEMLDLGFLPDVEKII 216

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            L+P  RQT+LFSATM  ++  ++  ++  P  I    P     T+ +     +  +S  
Sbjct: 217 QLLPAKRQTMLFSATMPGQVISLARRYMSQPTHIRATAPDDEGATVANITQHVFRAHSMD 276

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              +   +   D     +IFC  K+   ++   L ++GF+  A+HG++ Q +R + L  F
Sbjct: 277 KPEVVARVLQADGRGLVMIFCRTKRTAADIADQLARRGFASGAVHGDLGQGAREQALRAF 336

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + Y+HRIGRTGRAG  G A TLV  
Sbjct: 337 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGASGIAITLVDW 396

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
           +DI     I K +         DL+  + P E    ++H     N  IP  +TG   R +
Sbjct: 397 DDIPRWQLINKAL---------DLA-FHEPEETYSTSEHLFELLN--IPAGTTGVLPRGE 444

Query: 412 N 412
            
Sbjct: 445 R 445


>gi|228941450|ref|ZP_04104001.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974381|ref|ZP_04134950.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980974|ref|ZP_04141277.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis Bt407]
 gi|228778765|gb|EEM27029.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis Bt407]
 gi|228785431|gb|EEM33441.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818231|gb|EEM64305.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 436

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 114/375 (30%), Positives = 201/375 (53%), Gaps = 6/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L 
Sbjct: 5   TFTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLN 64

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +   R  V+ +      E  +++  ++    +   ++  +T   LIGG   +   +KL+
Sbjct: 65  RINASREEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   Q 
Sbjct: 125 KQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +     +    L   + 
Sbjct: 185 LVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKH---RNKIDLVNKML 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q +V
Sbjct: 242 LQFKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +D++
Sbjct: 302 ATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEALDSL 361

Query: 361 EKLIEKKVDWLNGDL 375
           EK  ++ +++ + DL
Sbjct: 362 EK--QRHIEFKHVDL 374


>gi|170094876|ref|XP_001878659.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647113|gb|EDR11358.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 617

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 125/392 (31%), Positives = 197/392 (50%), Gaps = 17/392 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ +   ++  +     V PTPIQ++ IP      D+ GIA TG+GKT +F LP++  
Sbjct: 183 FVDMKIPEAILEYLKSKRIVTPTPIQLQGIPTAFSGRDIIGIAFTGSGKTLAFCLPLIML 242

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-------GKNYNLTVALLIGGI 110
                 +    R   P  +IL P+RELA Q  +N   +       GK   L   L +GGI
Sbjct: 243 ALEEESKLPFVRGEGPVGIILCPSRELANQTYENVVTWCAALAKDGKYPPLNSLLCMGGI 302

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q+  + +G  +++ TPGR++D   + K  +++ + L +DEADRM+D+GF   ++NI
Sbjct: 303 SMSDQSHVMSKGLHIVVATPGRLIDMLEKKKFTLDSCKYLCMDEADRMIDLGFEEDVRNI 362

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S     RQTLLFSATM  ++Q+    F +      V      A       +       +
Sbjct: 363 MSFFKHQRQTLLFSATMPRKIQE----FARESLIKPVLVNVGRAGAANLDVLQVVEYVKQ 418

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           +  ++  L   Q T    IIF   K  V ++   L  +G    AIHG+  Q  R   + +
Sbjct: 419 EAKMVYLLECLQKTPPPVIIFSENKNEVDDIQEYLLLKGVEAVAIHGSKTQEERQYAIKS 478

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   +MVAS +A++GLD  ++ HV  F +P   E+Y+H+IGRTGR+G+ G A T V 
Sbjct: 479 FKSGAKDVMVASGVASKGLDFSEIQHVIIFSMPKEIEDYVHQIGRTGRSGKTGIATTFVN 538

Query: 351 KED-IKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
                + +  ++ L+ +    +   LSS++ P
Sbjct: 539 MNTPEQTLLDLKYLLMEAGQKVPPFLSSIDDP 570


>gi|302508367|ref|XP_003016144.1| ATP-dependent RNA helicase, putative [Arthroderma benhamiae CBS
           112371]
 gi|291179713|gb|EFE35499.1| ATP-dependent RNA helicase, putative [Arthroderma benhamiae CBS
           112371]
          Length = 528

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 127/432 (29%), Positives = 209/432 (48%), Gaps = 19/432 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ LGL+P +V ++      +PT IQ   IP +++  D  G ++TG+GKT +F  P+L 
Sbjct: 100 SFSSLGLAPWLVSSLKAMEIKRPTAIQKSCIPEIIKGRDCIGGSRTGSGKTVAFAGPILH 159

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                         +IL PTRELA Q+ +  +      +L   L+ GG     Q   L +
Sbjct: 160 KW---SEDPFGIYAVILTPTRELALQIFEQVKAISAPQSLKPLLITGGSDMRPQAIGLSQ 216

Query: 122 GADVLICTPGRILDHFN----RGKLLMNNIEILVIDEADRMLDMG---FIPYIQNITSLV 174
              ++I TPGR+ DH         + +  + ++V+DEADR+L  G    +P ++   S +
Sbjct: 217 RPHIVIATPGRLADHIKSSGEDTIIGLKRVRMVVLDEADRLLTSGPGSMLPDVETCLSAL 276

Query: 175 PFTRQTLL--FSATMTDELQ----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
           P +       F+AT+T E++                 E++T ++T               
Sbjct: 277 PPSSDRQTLLFTATVTPEVRALKSMPRAKNKPPIFVTEISTENTTIPPTLKQTYLQVPLN 336

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            ++  L   L    ++ K+ IIFCN+ K    L   L +    V ++H  + Q  R+  L
Sbjct: 337 HREAFLHVLLSTEGNSSKSTIIFCNRTKTADLLERILRRLSHRVTSLHSLLPQSERVANL 396

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           S F+    +L+VA+D+AARGLDIP VG V N+DVP   ++YIHR+GRT RAGR G+A TL
Sbjct: 397 SRFRASAARLLVATDVAARGLDIPSVGLVINYDVPRNPDDYIHRVGRTARAGREGEAITL 456

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD- 407
           V + D++ + AIE  + K++        ++   + K  + +   + K   + +   G D 
Sbjct: 457 VGQRDVQLVLAIEARVGKQMVAWEEPGVNIESRIVKGTVLKEVGSTKREAMGEIDEGRDV 516

Query: 408 --RRKKNYSSQK 417
             RR +     +
Sbjct: 517 LGRRVRKLKKVR 528


>gi|121705144|ref|XP_001270835.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           clavatus NRRL 1]
 gi|134034143|sp|A1CJT5|IF4A_ASPCL RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|119398981|gb|EAW09409.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           clavatus NRRL 1]
          Length = 398

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P+++  +   G+ +P+ IQ + I  +++  DV   AQ+GTGKTA+F +  L 
Sbjct: 26  SFDSMDLKPELLRGIYAYGFERPSAIQQRAIMPIIKGSDVIAQAQSGTGKTATFSISALQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++  + LIL PTRELA Q+       G   +L     IGG       K L+ 
Sbjct: 86  KIDPN---LKACQALILAPTRELAQQIQKVVVAIGDFMSLECHACIGGTNVREDMKALQD 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + +++ ++DEAD ML  GF   I +I  L+P + Q +
Sbjct: 143 GPQVVVGTPGRVQDMIQRRVLRTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQSTQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 203 LLSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A
Sbjct: 261 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIA 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 321 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 381 QFYSTQIEEMPMNVADL 397


>gi|228923037|ref|ZP_04086330.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836670|gb|EEM82018.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 436

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 114/375 (30%), Positives = 201/375 (53%), Gaps = 6/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L 
Sbjct: 5   TFTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLN 64

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +   R  V+ +      E  +++  ++    +   ++  +T   LIGG   +   +KL+
Sbjct: 65  RINASREEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   Q 
Sbjct: 125 KQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +     +    L   + 
Sbjct: 185 LVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKH---RNKIDLVHKML 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q +V
Sbjct: 242 LQFKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +D++
Sbjct: 302 ATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEALDSL 361

Query: 361 EKLIEKKVDWLNGDL 375
           EK  ++ +++ + DL
Sbjct: 362 EK--QRHIEFKHVDL 374


>gi|225860734|ref|YP_002742243.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229616|ref|ZP_06963297.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255810|ref|ZP_06979396.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298502545|ref|YP_003724485.1| ATP-dependent RNA helicase [Streptococcus pneumoniae TCH8431/19A]
 gi|225727110|gb|ACO22961.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238140|gb|ADI69271.1| ATP-dependent RNA helicase [Streptococcus pneumoniae TCH8431/19A]
 gi|327390117|gb|EGE88460.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA04375]
          Length = 447

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 201/452 (44%), Gaps = 43/452 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +   +  +
Sbjct: 61  QQLDEASDSVQAV---ITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T             
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  +    +
Sbjct: 237 --TQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL-------------------------IEKKVDWLNGDLSSL---------NPPLE 383
             +EKL                          EKK D L+ ++  L             +
Sbjct: 355 RELEKLGIKFSPKIVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKKKKVKPGYKK 414

Query: 384 KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           KI  A     RK      ++ G   RK    +
Sbjct: 415 KIQWAVDEKRRKTKRAENRARGRAERKAKRQT 446


>gi|254442828|ref|ZP_05056304.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198257136|gb|EDY81444.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 406

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 112/374 (29%), Positives = 191/374 (51%), Gaps = 7/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F +LG+   ++  + + G ++PT IQ   IPL+L+   D  G AQTGTGKTA+F LP+L
Sbjct: 38  TFKELGVVADLIRGIEEKGILEPTEIQELAIPLLLKNEGDFVGQAQTGTGKTAAFGLPLL 97

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA-QNKKL 119
             ++  + RV+    L+L PTRELA Q+A     Y K         + G      Q   L
Sbjct: 98  QRIDPTQKRVQA---LVLSPTRELAKQIAKQLFHYTKYTAKIFTEAVAGGEKIEGQIAAL 154

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R   +++ TPGR++D      + ++ I+ LV+DEAD ML MGF   +  I       ++
Sbjct: 155 SRTTHIVVATPGRLIDLLKVKAVDLSTIDTLVLDEADEMLSMGFQDELNKILEFTRGAKR 214

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSATM   + ++ E +L    +       +        +        K   + +   
Sbjct: 215 TWLFSATMPKGVTRMIERYLSPDAKHVTVDRKNPVNKNIEHWYTVCTIEEKPDEIAR--F 272

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 + G++FC  K  V N+ + L ++GF V  + G++ Q+ R K++  F++   +++
Sbjct: 273 IKAQKGRRGVVFCRSKAGVQNIANELTERGFEVATLQGDLSQKDRDKVMRGFRKERSEVL 332

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++D++ARG+D+  + +V +  +P++ E Y HR GRT RAGR G +   + + D+K I  
Sbjct: 333 VSTDVSARGIDVEGLAYVVHHQLPDQIEYYTHRSGRTARAGRKGISMAFITRGDVKRIRE 392

Query: 360 IEKLIEKKVDWLNG 373
           ++  +  K   +  
Sbjct: 393 LQTELHIKFREIKA 406


>gi|15902714|ref|NP_358264.1| ATP-dependent RNA helicase [Streptococcus pneumoniae R6]
 gi|116516888|ref|YP_816157.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae D39]
 gi|168492910|ref|ZP_02717053.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC3059-06]
 gi|182683681|ref|YP_001835428.1| DEAD-box ATP dependent DNA helicase [Streptococcus pneumoniae
           CGSP14]
 gi|221231556|ref|YP_002510708.1| helicase [Streptococcus pneumoniae ATCC 700669]
 gi|303260226|ref|ZP_07346197.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|303264099|ref|ZP_07350020.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae BS397]
 gi|15458257|gb|AAK99474.1| ATP-dependent RNA helicase [Streptococcus pneumoniae R6]
 gi|116077464|gb|ABJ55184.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae D39]
 gi|182629015|gb|ACB89963.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           pneumoniae CGSP14]
 gi|183576996|gb|EDT97524.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC3059-06]
 gi|220674016|emb|CAR68529.1| putative helicase [Streptococcus pneumoniae ATCC 700669]
 gi|302638550|gb|EFL69014.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|302646504|gb|EFL76730.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae BS397]
          Length = 447

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 201/452 (44%), Gaps = 43/452 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +   +  +
Sbjct: 61  QQLDEASDSVQAV---ITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T             
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  +    +
Sbjct: 237 --TQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL-------------------------IEKKVDWLNGDLSSL---------NPPLE 383
             +EKL                          EKK D L+ ++  L             +
Sbjct: 355 RELEKLGIKFSPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKKKKVKPGYKK 414

Query: 384 KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           KI  A     RK      ++ G   RK    +
Sbjct: 415 KIQWAVDEKRRKTKRAENRARGRAERKAKRQT 446


>gi|117921368|ref|YP_870560.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117613700|gb|ABK49154.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 487

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 136/369 (36%), Positives = 207/369 (56%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY++ T +Q + IPL L+  D+   AQTGTGKTASF LP+L
Sbjct: 22  MKFDTLGLSSPILNAIAECGYLQLTQVQQQVIPLALEGKDIMACAQTGTGKTASFALPVL 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K      + R L++ PTRELA QV  N +KY +   L    + GG     Q K +E
Sbjct: 82  EQLSKQPNDKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVE 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+ D   +  L ++++  LVIDEADRMLD+GF+  I+ +  L+    QT
Sbjct: 142 QGVDILVATPGRLFDIIGQFHLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIATEHQT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT +D +++                  +   T        Y    ++ A L   L 
Sbjct: 202 MLFSATYSDAVKQ----LSHKMLNQPEWVNVAENTTASTVEQLVYRVDKRRKAELLSELV 257

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  ++F + K+   +L   L   G S    HG+  Q +R ++L +FK G ++++V
Sbjct: 258 GRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLV 317

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N ++P  AE+Y+HRIGRTGRAG  G+A + V+  D + +  I
Sbjct: 318 ATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEI 377

Query: 361 EKLIEKKVD 369
           E LI + + 
Sbjct: 378 EALIGQTLP 386


>gi|15900655|ref|NP_345259.1| DEAD-box ATP dependent DNA helicase [Streptococcus pneumoniae
           TIGR4]
 gi|111658348|ref|ZP_01409036.1| hypothetical protein SpneT_02000488 [Streptococcus pneumoniae
           TIGR4]
 gi|149025531|ref|ZP_01836464.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP23-BS72]
 gi|168484834|ref|ZP_02709779.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC1873-00]
 gi|225854268|ref|YP_002735780.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae JJA]
 gi|303261432|ref|ZP_07347380.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|303268729|ref|ZP_07354519.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae BS458]
 gi|307127689|ref|YP_003879720.1| ATP-dependent RNA helicase [Streptococcus pneumoniae 670-6B]
 gi|14972235|gb|AAK74899.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           pneumoniae TIGR4]
 gi|147929403|gb|EDK80400.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP23-BS72]
 gi|172041993|gb|EDT50039.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC1873-00]
 gi|225722536|gb|ACO18389.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae JJA]
 gi|302637566|gb|EFL68053.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|302641789|gb|EFL72146.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae BS458]
 gi|306484751|gb|ADM91620.1| ATP-dependent RNA helicase [Streptococcus pneumoniae 670-6B]
 gi|332077176|gb|EGI87638.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA17545]
          Length = 447

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 201/452 (44%), Gaps = 43/452 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +   +  +
Sbjct: 61  QQLDEASDSVQAV---ITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T             
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  +    +
Sbjct: 237 --TQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL-------------------------IEKKVDWLNGDLSSL---------NPPLE 383
             +EKL                          EKK D L+ ++  L             +
Sbjct: 355 RELEKLGIKFSPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKKKKVKPGYKK 414

Query: 384 KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           KI  A     RK      ++ G   RK    +
Sbjct: 415 KIQWAVDEKRRKTKRAENRARGRAERKAKRQT 446


>gi|301090390|ref|XP_002895410.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262098662|gb|EEY56714.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 565

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 122/401 (30%), Positives = 195/401 (48%), Gaps = 19/401 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +   P ++ A+     ++PTPIQ++ IP +L   D+ GIA TG+GKT +F LP++ 
Sbjct: 92  SFEYMRFPPAILDALKAKNILRPTPIQVQAIPCILAGRDMIGIAFTGSGKTVTFTLPLVM 151

Query: 62  -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL------TVALLIGGI 110
                  +        P  LI+ P+REL  Q  D    +  +            L IGG 
Sbjct: 152 LALEEEKKMPIIGHEGPFGLIVGPSRELMRQTFDVVTHFTSHLFKAGYPELRGLLCIGGE 211

Query: 111 PFEAQNK-KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
               Q+     RG  +++ TPGR+       ++ +   + + +DE DRMLD+GF   +  
Sbjct: 212 DKRQQSDLIASRGVHIVVATPGRLNHFLKLREMNLRLCKYICLDEGDRMLDLGFDEEVAA 271

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
             +     RQTLLFSATM     +  ++F ++     V      A       +       
Sbjct: 272 TFNHFTSQRQTLLFSATMP----QKFQDFAKDVLVKPVLVNVGRAGAANLDVIQEVEYVK 327

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           +   ++  L   Q T    +IFC +K +V ++   L  +G    +IHG  DQ  R + + 
Sbjct: 328 QDAKIVYLLECLQKTSPPVVIFCERKGDVDDIYEYLILKGVEAASIHGGKDQEERNEAID 387

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G   ++VA+D+AA+GLD PD+ HV NFD+P   ENY+HRIGRTGR G+ G A T +
Sbjct: 388 LFKSGQKDVLVATDVAAKGLDFPDIKHVINFDMPAEIENYVHRIGRTGRCGKTGVATTFI 447

Query: 350 AKE--DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
            K   +   +D ++ L+ +    +   L +L  P E+++ +
Sbjct: 448 NKSVPESALLD-LKHLLVEAKQTVPPVLKALEDPYEELERS 487


>gi|157961286|ref|YP_001501320.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157846286|gb|ABV86785.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 442

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 141/431 (32%), Positives = 232/431 (53%), Gaps = 19/431 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGL P+++  +    Y KPT IQ   IP VL   DV G A+TG+GKTA+F LP++ 
Sbjct: 24  DFTQLGLIPELLETLKLLSYTKPTAIQSHIIPAVLDGKDVLGGAKTGSGKTAAFALPIIQ 83

Query: 62  ILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQN 116
            L K   R         L+L PTRELA QVAD+F +Y +    NL    + GG+    Q 
Sbjct: 84  KLAKASPRKAGGNFVSCLVLVPTRELAQQVADSFMRYSQLIKPNLKTLAVYGGVSTNVQM 143

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  GAD+++ TPGR++D  +   L ++N   LV+DEADRML +GF   +  + + +P 
Sbjct: 144 QSLRGGADIVVATPGRLIDLISSNALKLDNTTTLVLDEADRMLSLGFTEELNELLAKLPK 203

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T+QTLLFSAT  +E+++++++ L NP  +++ +   +        V    + +     L 
Sbjct: 204 TKQTLLFSATFPEEVRELTDSLLNNPVEVQLQSSEESTLVQRVITVNRNRKTA-----LL 258

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L   +  +  +IF + K +   L   LE  G +    H +  Q +R ++L  FK G I
Sbjct: 259 AQLIKDNQWQQVLIFASAKYSCNRLAQKLENAGITAEVFHSDKGQGARNRVLEEFKSGEI 318

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARG+DI  +  V NF++P    +Y+HRIGR+GRAG  G A +L++ ++ +H
Sbjct: 319 SVLIATDIAARGIDIEKLPIVINFELPRSPVDYMHRIGRSGRAGEAGLAMSLISHDEYQH 378

Query: 357 IDAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
              IEK  + +++   + G  + L  P +         +R+  P+ + +    + +    
Sbjct: 379 FKLIEKKNKLRLEREQIPGFEADLEAPEDC-------PSREVKPMAKPAGTGKKHRNKLP 431

Query: 415 SQKSHIPLKES 425
              + +  K+S
Sbjct: 432 KANAELWGKKS 442


>gi|118123963|ref|XP_424667.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 25
           [Gallus gallus]
          Length = 433

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 99/390 (25%), Positives = 166/390 (42%), Gaps = 13/390 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L  +++  V   G+ +P+ IQ   +P+++     ++   +Q+GTGKTA+FVL M
Sbjct: 48  TFEELHLKKELLQGVYTMGFNRPSKIQANALPILMAHPPQNLIAQSQSGTGKTAAFVLAM 107

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++      R P+ L L PT ELA Q+    EK G+  N             +    L
Sbjct: 108 LSRVKGAE---RYPQCLCLAPTYELALQIGHVAEKMGRFCNDIRVTYAVQGNRVSPGTVL 164

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E    +             R   +      ++ +    +   GF      I   +P   Q
Sbjct: 165 EEQIVIGTPGTMLDWCFKRRLLNMRRICMFVLDEADVMIDTQGFSSQSIRIQRALPKDCQ 224

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  + L K +   +  P  I++     T   I   +        K  AL     
Sbjct: 225 MLLFSATFKETLWKFALQIVSRPIIIKLRQEELTLTNIRQYYFVCRNWEQKYEALCNL-- 282

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC  +++   L   + + G  V  +   +    R  ++  F++G  +++
Sbjct: 283 YGSITIGQAMIFCQTRRSADWLSVKMIQDGHQVAMLTAELSIVQRADVIQRFRDGKEKVL 342

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           + +++ ARG+D+  V  V NF +P         E Y+HRIGRTGR G+ G AF +V    
Sbjct: 343 ITTNVCARGIDVAQVTIVVNFGLPINRQKQPDFETYLHRIGRTGRFGKRGIAFNMVDSHS 402

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
              +  IE+  + K+  L+ D       LE
Sbjct: 403 AHLVRCIEEHFQTKIKRLDPDCMDKLEELE 432


>gi|323304640|gb|EGA58403.1| Dbp8p [Saccharomyces cerevisiae FostersB]
          Length = 412

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 120/413 (29%), Positives = 197/413 (47%), Gaps = 21/413 (5%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
               +PT IQ   IP +L+  D  G A+TG+GKT +F  PMLT   +          ++L
Sbjct: 1   MKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTKWSE---DPSGMFGVVL 57

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA Q+A+ F   G + N+ V++++GG     Q   L+R    +I TPGR+  H  
Sbjct: 58  TPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKPHFIIATPGRLAHHIM 117

Query: 139 RGKLLM----NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL--FSATMTDELQ 192
                        + LV+DEAD +L   F  ++    S +P   +     F+AT+TD+++
Sbjct: 118 SSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDKRQTLLFTATITDQVK 177

Query: 193 -----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
                 V +           +  +    +          ++ K+  L Q L   +   K 
Sbjct: 178 SLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHVKEAYLYQLLTCEEYENKT 237

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            IIF N+      L  +L++    V ++H  + Q+ R   L  F+    ++++A+D+A+R
Sbjct: 238 AIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFRANAARILIATDVASR 297

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           GLDIP V  V N+D+P+  + +IHR GRT RAGR G A + V + D+  I AIE  I KK
Sbjct: 298 GLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQRDVSRIQAIEDRINKK 357

Query: 368 VDWLNG--DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           +   N   D + +   L K+       A++ + +  +   F  RK+    +++
Sbjct: 358 MTETNKVHDTAVIRKALTKV-----TKAKRESLMAMQKENFGERKRQQKKKQN 405


>gi|281346401|gb|EFB21985.1| hypothetical protein PANDA_014345 [Ailuropoda melanoleuca]
          Length = 524

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 100/368 (27%), Positives = 182/368 (49%), Gaps = 15/368 (4%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     ++ +++  +LDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 161 TFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 220

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L++   +      LI+ PTRELA Q+     K  +        +    +  +   
Sbjct: 221 PILMHLKQPTNKGFR--ALIISPTRELANQIHRELVKISEGTGFRIHMIHKAAVAAKKFG 278

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++    +    ++  ++E LV+DE+D++ + G   +        
Sbjct: 279 PKSSQKFDILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIF 338

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT   ++++  +  L N   + +   +S AET+E   +   ++  K
Sbjct: 339 LACTSHKVRRAMFSATFAYDVEQWCKLNLDNVITVSIGARNSAAETVEQELLFVGSETGK 398

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +  +     ++F    +    L H L  +G +V  IH +  Q+ R   + +
Sbjct: 399 LLAMRELVKKGFNPP--VLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHS 456

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   
Sbjct: 457 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFT 516

Query: 351 KEDIKHID 358
           ++D   + 
Sbjct: 517 EDDKPLLR 524


>gi|229098758|ref|ZP_04229696.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-29]
 gi|229104916|ref|ZP_04235573.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-28]
 gi|228678490|gb|EEL32710.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-28]
 gi|228684602|gb|EEL38542.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-29]
          Length = 436

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 121/378 (32%), Positives = 206/378 (54%), Gaps = 12/378 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ A+ +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L 
Sbjct: 5   TFTQYDFKPFLIDAIRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLN 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNF----EKYGKNYNLTVALLIGGIPFEAQNK 117
            +   R  V++    I  PTRELA Q+ +      +   ++  +T   LIGG   +   +
Sbjct: 65  RINPSREEVQLV---ITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIE 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL++   +++ TPGRI D      L +   + +++DEAD MLDMGFI  +  I + +P  
Sbjct: 122 KLKKQPHIVVGTPGRIKDLVEEKALFVYKADTIIVDEADLMLDMGFIQDVDKIAARMPKN 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +     +    L +
Sbjct: 182 LQMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSRH---RNKIELVK 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q      I+F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 239 NMLLQFKPYLAIVFTNTKKKADEVADGLAERGLKVGRIHGDLSPRDRKKMMKQVRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|224013446|ref|XP_002296387.1| dead box family RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220968739|gb|EED87083.1| dead box family RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 433

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 89/381 (23%), Positives = 161/381 (42%), Gaps = 8/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+ + AV+D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 49  FKDFILKPECLRAVVDCGFEHPSEVQHECIPQAVLGMDIVCQAKSGMGKTAVFVLATLHQ 108

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN---LTVALLIGGIPFEAQNK-- 117
           L          +  +L              E    +     +  A+  GG+  +      
Sbjct: 109 LNPNAFPAGENQVSVLVLCHTRELAFQIAHEYERFSKYLPEVKTAVFYGGVSIKTNRDVL 168

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           K +    V+      +     +   L +    ++ +    +  +     IQ I  + P  
Sbjct: 169 KNDCPHIVVGTPGRVLGLAREKTLKLDHIKHFVLDECDRILESLDMRRDIQEIFRMTPHE 228

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +Q ++FSAT++ E++ V + F Q+P  I V+  +         +    A+  K       
Sbjct: 229 KQVMMFSATLSKEIRPVCKKFCQDPMEIYVDDDTKLTLHGLQLYYVKLAEAEKNR--KLN 286

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L         +IF ++      L   L +  F    IH    Q  R+    +FKE   +
Sbjct: 287 DLLDALEFNQVVIFVSKVARANELNRLLTECNFPSICIHAGQKQDERIAKYKSFKEFNAR 346

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKH 356
           ++V++DL  RG+DI  V  V N+D P+ ++ ++HR+GR GR G  G A + ++ E D + 
Sbjct: 347 ILVSTDLFGRGIDIERVNVVINYDFPDDSDQFLHRVGRAGRFGTKGLAISFISSEPDQEI 406

Query: 357 IDAIEKLIEKKVDWLNGDLSS 377
           +D ++   E  +  L  ++ +
Sbjct: 407 LDKVQSRFEVNIPELPDEIDA 427


>gi|215486637|ref|YP_002329068.1| ATP-dependent RNA helicase DbpA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312966726|ref|ZP_07780944.1| ATP-independent RNA helicase dbpA [Escherichia coli 2362-75]
 gi|215264709|emb|CAS09083.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312288190|gb|EFR16092.1| ATP-independent RNA helicase dbpA [Escherichia coli 2362-75]
          Length = 457

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 133/401 (33%), Positives = 212/401 (52%), Gaps = 10/401 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDVSLFQTQG---LVLCPTRELADQVAGELRRLARFLLNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDW-LNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
             +++ K++W      SS+ P   ++     +  +K    P
Sbjct: 357 SDMLQIKLNWQTPPANSSIVPLKAEMATLCIDGGKKAKMRP 397


>gi|324328191|gb|ADY23451.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 436

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 207/378 (54%), Gaps = 12/378 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L 
Sbjct: 5   TFTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLN 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNF----EKYGKNYNLTVALLIGGIPFEAQNK 117
            +  GR  V++    I  PTRELA Q+ +      +   ++  +T   LIGG   +   +
Sbjct: 65  RINPGREEVQLV---ITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIE 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P  
Sbjct: 122 KLKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKN 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +     +    L +
Sbjct: 182 LQMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKH---RNKIDLVK 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q      ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 239 RMLLQFKPYLAVVFTNTKKMADQVADGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGYSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|308159475|gb|EFO62004.1| ATP-dependent RNA helicase [Giardia lamblia P15]
          Length = 449

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 128/417 (30%), Positives = 207/417 (49%), Gaps = 18/417 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH--DVCGIAQTGTGKTASFVLP 58
           M F DLG+ P+++ A+   G+++PT IQ + + +V      DV G+A+TG+GKT +F +P
Sbjct: 1   MLFRDLGVCPELLDALERIGWLEPTAIQKEMLAVVSHNKACDVVGVAETGSGKTGAFAIP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L  L +    V+   T++L PTRELA Q    F   GK + L   L+IGG+    Q K 
Sbjct: 61  ALQDLLERGNNVKGVHTVVLSPTRELAVQTFSVFRDLGKGFGLRTGLVIGGVDLMQQRKT 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +   VLICTPGR++DH    +     ++  L+IDEAD+ML+      + ++T   P  
Sbjct: 121 LAQQPHVLICTPGRLVDHLATTEGFSLKSLRFLIIDEADKMLEQDMGRAVLSLTKDCPQR 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R+T LFSAT    +Q +        + + +     T    +                L  
Sbjct: 181 RRTFLFSATFPSAVQALQNECTDRSRLVHIRVGVLTKAAPDVDGSTNTQLAVVDNEFLSH 240

Query: 238 LLQ---------------SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
            +                +       I+F  +   V  L   L   GF V  +HG++ Q 
Sbjct: 241 KMVVLPHSEKQLGLVVLLNNHATCQIIVFATKISTVTKLALMLTTLGFEVGVVHGSMSQD 300

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R++ L+ F++G  ++++ASD+A RG+DIP++  V N+D+P  + +Y+HR+GRT RAGR 
Sbjct: 301 KRLEELNRFRQGEHKILLASDVAGRGIDIPNIDLVINYDLPVASRDYVHRVGRTARAGRR 360

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           G A T+V + D+ +   IE ++  K++    D S       +++ A     R    I
Sbjct: 361 GTALTVVTQYDVVNFKRIEAMLGIKMEPYTPDFSEAAGLRSQVEEAIRFAERSARSI 417


>gi|229198412|ref|ZP_04325118.1| ATP-dependent RNA helicase yqfR [Bacillus cereus m1293]
 gi|228585112|gb|EEK43224.1| ATP-dependent RNA helicase yqfR [Bacillus cereus m1293]
          Length = 439

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 207/378 (54%), Gaps = 12/378 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L 
Sbjct: 8   TFTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLN 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNF----EKYGKNYNLTVALLIGGIPFEAQNK 117
            +  GR  V++    I  PTRELA Q+ +      +   ++  +T   LIGG   +   +
Sbjct: 68  RINPGREEVQLV---ITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIE 124

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P  
Sbjct: 125 KLKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKN 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +     +    L +
Sbjct: 185 LQMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKH---RNKIDLVK 241

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q      ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 242 RMLLQFKPYLAVVFTNTKKMADQVADGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 302 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGYSGIAVTIYDPANEEAL 361

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 362 DSLEK--QRHIEFKHVDL 377


>gi|217961776|ref|YP_002340346.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|222097732|ref|YP_002531789.1| ATP-dependent RNA helicase, dead/deah box family [Bacillus cereus
           Q1]
 gi|229141022|ref|ZP_04269565.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST26]
 gi|217063251|gb|ACJ77501.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|221241790|gb|ACM14500.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           Q1]
 gi|228642455|gb|EEK98743.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST26]
          Length = 436

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 207/378 (54%), Gaps = 12/378 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L 
Sbjct: 5   TFTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLN 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNF----EKYGKNYNLTVALLIGGIPFEAQNK 117
            +  GR  V++    I  PTRELA Q+ +      +   ++  +T   LIGG   +   +
Sbjct: 65  RINPGREEVQLV---ITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIE 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P  
Sbjct: 122 KLKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKN 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +     +    L +
Sbjct: 182 LQMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKH---RNKIDLVK 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q      ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 239 RMLLQFKPYLAVVFTNTKKMADQVADGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGYSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|118586721|ref|ZP_01544158.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163]
 gi|118432809|gb|EAV39538.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163]
          Length = 454

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 141/457 (30%), Positives = 217/457 (47%), Gaps = 34/457 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L  ++V A+    + KPT +Q + IP ++   DV G +QTG+GKT +F+LP+  
Sbjct: 4   QFGQFNLKTEIVKAIDGISFNKPTKVQKRIIPPIIAGRDVVGQSQTGSGKTHAFLLPIFN 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG--------KNYNLTVALLIGGIPFE 113
            L+      +     I  P+RELA Q+   F  +            +L +A  IGG    
Sbjct: 64  ALDPSLEETQAV---ITSPSRELAEQLYQAFRDFQKSLAAIDENFADLRIADYIGGTDRN 120

Query: 114 AQNKK-LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
            Q ++   +   + I TPGR+ D  ++  LL+N     V+DEAD  LDMGF+  +  I S
Sbjct: 121 KQIRQLERKQPQIAIGTPGRLKDFLSKNFLLVNQNRFFVVDEADMALDMGFLEDVDTIAS 180

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +P   Q L+FSAT+ D+L    + +++NP   E+   +  A+TI        A  SK  
Sbjct: 181 AMPDNLQMLVFSATIPDKLTPFLKRYMKNPLIEEIPVSTVVADTI---DNYLLATKSKDK 237

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             +   L ++      ++F N K+ V  L H L+ QG  V  +HG I+ R R + +   K
Sbjct: 238 NEVIFDLLTRKESYLTLVFANTKERVHELAHFLDSQGLKVAEVHGGIEPRERRRTMKRIK 297

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +   Q +VA+DLAARGLDI  V  V N D+P   E +IHR+GRTGR G  G A TL   +
Sbjct: 298 KQEFQYVVATDLAARGLDIQGVSEVINDDIPTDLEFFIHRVGRTGRNGLSGTAITLYGPD 357

Query: 353 DIKHIDAIEKL-IEKKVDWLNG----DLSS-------------LNPPLEKIDIAQHNHAR 394
           +   ++ +EKL I  +   L      D+               L+P L  +   +  H +
Sbjct: 358 EEDKVEELEKLGINFQAKQLKDHQLVDVKDRNRRARRRPSQKQLDPELVGLVKKKKAHVK 417

Query: 395 KNNPIPQKST-GFDRRKKNYSSQKSHIPLKESEKISK 430
                  K    F + K+N  SQ++        K ++
Sbjct: 418 PGYRRQIKGAIRFKQMKENKVSQRTASRAARKAKKNR 454


>gi|113866090|ref|YP_724579.1| ATP-dependent RNA helicase DbpA [Ralstonia eutropha H16]
 gi|113524866|emb|CAJ91211.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
          Length = 469

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 138/404 (34%), Positives = 202/404 (50%), Gaps = 15/404 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L LSP ++  +   GY + TPIQ  ++P+ L   D+   A+TG+GKTA+F L +L  
Sbjct: 14  FSNLPLSPTMLATLAQLGYDEMTPIQAASLPITLAGQDLVAQAKTGSGKTAAFGLALLHR 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + ++L PTRELA QV     +  +       L +  G P   Q   L  
Sbjct: 74  LDP---RRFDVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGSPMRPQVDSLIH 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRILDH +RG L ++ I  LV+DEADRMLDMGF   I  + S  P  RQTL
Sbjct: 131 GAHIVVGTPGRILDHIDRGSLDLSGINTLVLDEADRMLDMGFFDDIAYVASRCPKDRQTL 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    + K+S  F     R   +                Y     +       L  
Sbjct: 191 LFSATYPPGIDKLSHRF----LRNPQSVKLEATHDNTTIRQRFYEVEEGERLNTVGRLLD 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FCN K     L   L  QG+   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 247 HFRPVSTLAFCNTKARCRELVELLRAQGYQALALHGELEQRERDQVLVQFANRSCSVLVA 306

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++    E ++HRIGRTGRA + G AF+LV+ +++  +  +E
Sbjct: 307 TDVAARGLDIAQLEAVINVEITPDPEVHVHRIGRTGRADQEGWAFSLVSMDEMGRVGNLE 366

Query: 362 KLIEKKVDWLNGDLSSLNPP-----LEKIDIAQHNHARKNNPIP 400
           +    + +W    L+ L P      L  +   Q    RK    P
Sbjct: 367 QHHGGEFEWQP--LADLRPASNERLLPPMVTLQMLGGRKEKIRP 408


>gi|42783412|ref|NP_980659.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987]
 gi|42739341|gb|AAS43267.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           ATCC 10987]
          Length = 436

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 207/378 (54%), Gaps = 12/378 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L 
Sbjct: 5   TFTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLN 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNF----EKYGKNYNLTVALLIGGIPFEAQNK 117
            +  GR  V++    I  PTRELA Q+ +      +   ++  +T   LIGG   +   +
Sbjct: 65  RINPGREEVQLV---ITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIE 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P  
Sbjct: 122 KLKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKN 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +     +    L +
Sbjct: 182 LQMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKH---RNKIDLVK 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q      ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 239 RMLLQFKPYLAVVFTNTKKMADQVADGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGYSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|333007298|gb|EGK26780.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-272]
 gi|333019294|gb|EGK38578.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-227]
          Length = 457

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 200/370 (54%), Gaps = 9/370 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L   G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTSCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L +   S  ++HG++DQR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVEQSALSLHGDLDQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDW 370
             +++ K++W
Sbjct: 357 SDMLQIKLNW 366


>gi|326634448|pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
          Length = 395

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 99/373 (26%), Positives = 181/373 (48%), Gaps = 17/373 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +LGL+P+++  +    + KP+ IQ + +PL+L     ++   +Q+GTGKTA+F L M
Sbjct: 6   SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           LT +         P+ + L P+RELA Q  +  ++ GK   +T  L++   P   +  K 
Sbjct: 66  LTRV---NPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIV---PDSFEKNKQ 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++      +     +   L      ++ +  + +   G       +   +P   Q
Sbjct: 120 INAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQ 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT  D +++ ++  + N   +E+ T     + I+  ++    +  K   L +   
Sbjct: 180 LVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTEL-- 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+ + IIF   KK    L   L+ +G  V  +HG++  + R +++ +F+EG  +++
Sbjct: 238 YGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPN------RAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           + +++ ARG+DIP V  V N+D+P           YIHRIGRTGR GR G A + V  ++
Sbjct: 298 ITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 357

Query: 354 IKH-IDAIEKLIE 365
             + + AI+K   
Sbjct: 358 SFNILSAIQKYFG 370


>gi|256273404|gb|EEU08340.1| Dbp5p [Saccharomyces cerevisiae JAY291]
          Length = 449

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 99/373 (26%), Positives = 181/373 (48%), Gaps = 17/373 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +LGL+P+++  +    + KP+ IQ + +PL+L     ++   +Q+GTGKTA+F L M
Sbjct: 60  SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 119

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           LT +         P+ + L P+RELA Q  +  ++ GK   +T  L++   P   +  K 
Sbjct: 120 LTRV---NPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIV---PDSFEKNKQ 173

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++      +     +   L      ++ +  + +   G       +   +P   Q
Sbjct: 174 INAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQ 233

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT  D +++ ++  + N   +E+ T     + I+  ++    +  K   L +   
Sbjct: 234 LVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTEL-- 291

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+ + IIF   KK    L   L+ +G  V  +HG++  + R +++ +F+EG  +++
Sbjct: 292 YGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVL 351

Query: 300 VASDLAARGLDIPDVGHVFNFDVPN------RAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           + +++ ARG+DIP V  V N+D+P           YIHRIGRTGR GR G A + V  ++
Sbjct: 352 ITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 411

Query: 354 IKH-IDAIEKLIE 365
             + + AI+K   
Sbjct: 412 SFNILSAIQKYFG 424


>gi|242081437|ref|XP_002445487.1| hypothetical protein SORBIDRAFT_07g020310 [Sorghum bicolor]
 gi|241941837|gb|EES14982.1| hypothetical protein SORBIDRAFT_07g020310 [Sorghum bicolor]
          Length = 666

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 136/406 (33%), Positives = 219/406 (53%), Gaps = 12/406 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +V   V   GY  PTPIQ KT+PL+L   DV  +A+TG+GKTA+F++PML  
Sbjct: 63  FESMGLCEEVYRGVRHKGYRVPTPIQRKTMPLILAGVDVAAMARTGSGKTAAFLVPMLQR 122

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +        R LIL PTR+LA Q      + GK  +L  ++++GG   E+Q + L   
Sbjct: 123 LRRRDPSAG-VRALILSPTRDLAMQTLKFCIQLGKFTDLRTSIIVGGDSMESQFEDLSEC 181

Query: 123 ADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TPGR++ H  +   + + ++E +V DEAD +  MGF  ++ +I   +  TRQTL
Sbjct: 182 PDIIIATPGRLMHHLNDVKDMTLRSVEYVVFDEADSLFSMGFAKHLHDILKKLSDTRQTL 241

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   L   ++  L++P  + ++     +  +   F  T  Q  K  ALL  + + 
Sbjct: 242 LFSATLPSALADFAKAGLRDPHIVRLDLDKKISPDLRLVF-FTLRQEEKLAALLYLVRER 300

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  IIF + K +V  L     ++G      +G +DQ +RM  +S F+     L++ 
Sbjct: 301 ISSEEQTIIFVSTKHHVEFLNILFREEGLEPSLSYGAMDQEARMIHISKFRARKTMLLIV 360

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP + +V N+D P + + ++HR+GR  R GR G A+T V  ED+ ++  + 
Sbjct: 361 TDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRIGTAYTFVTSEDMPYLLDLH 420

Query: 362 KLIEKKV------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
             + + +      + +  D+ ++N    KID A  N        PQ
Sbjct: 421 LFLSRPLRPAPTEEEILKDMDTINM---KIDEAIANGESVYGRFPQ 463


>gi|223998424|ref|XP_002288885.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220975993|gb|EED94321.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 518

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 113/393 (28%), Positives = 187/393 (47%), Gaps = 10/393 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L LS     A+   G+ + T IQ  +IP +L   D+ G A+TG+GKT +F+LP++ 
Sbjct: 21  TFASLPLSDLTQNALSAMGFTRMTQIQAMSIPALLSGKDLIGAAKTGSGKTLAFLLPVVE 80

Query: 62  ILEKGRARVRMPRTLI-LEPTRELAAQVADNFE--KYGKNYNLTVALLIGGIPFEAQNKK 118
           +L   +   R     I + PTRELA Q+    +       ++ T  L+IGG     + ++
Sbjct: 81  LLHNAKFGSRNGTGAIVISPTRELAMQIYGVCKDLCTSGKHHQTYGLIIGGANRRTEAER 140

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEI-LVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G +++I TPGR+LDH    K  +    +  V+DEADR+L+ GF   +++I   +P  
Sbjct: 141 LAKGVNIVIATPGRLLDHLQNTKGFVFRNLLAFVMDEADRILEQGFEDDLRSIIKALPKQ 200

Query: 178 RQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           RQT+LFSAT T +++                    +   T            S +  LL 
Sbjct: 201 RQTMLFSATQTKKVEDLARTAIDPKSAVYVEVPNETNLATAAGLEQGYVTVPSDQRFLLL 260

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                ++  K  ++F +   +V      L      V  IHG   Q+ R      F + T 
Sbjct: 261 FTFLKKNKNKKIMVFFSSCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTTFFQFCKQTT 320

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIK 355
             ++ +D+AARGLDIP V  +  FD P+  + YIHR+GRT R  +  G+A   +  E+  
Sbjct: 321 GTLLCTDVAARGLDIPAVDWIIQFDPPDDPKEYIHRVGRTARGEKGKGRALLFLTPEETG 380

Query: 356 HIDAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
            +  + K  +  ++        L+++   L+++
Sbjct: 381 FLRYL-KAAKVTLNEYEFPMTKLANVQSQLQRL 412


>gi|149631935|ref|XP_001509692.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 859

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 134/467 (28%), Positives = 224/467 (47%), Gaps = 15/467 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P+L
Sbjct: 66  LRFSDFPLSKKTLKGLQEAQYRMVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 125

Query: 61  TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L + +         LI+ PTRELA Q  +   K GKN+  +  L+IGG   + +++++
Sbjct: 126 ESLYRQQWTSMDGLGVLIISPTRELAYQTFEVLRKVGKNHEFSAGLIIGGKDLKQESERI 185

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   ++      +           +N+++LV+DEADR+LDMGF   +  I   +P  RQ
Sbjct: 186 NQINILICTPGRLLQHMDETTYFHASNLQMLVLDEADRILDMGFADTMNAIIENLPRKRQ 245

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT T  ++ ++   L++P+ + V+   +   T             ++   +    
Sbjct: 246 TLLFSATQTKSVKDLARLSLKDPEYVWVHE-KAKFSTPATLEQNYIVCELQQKINMLYSF 304

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF--SVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                 K  I+F +  K V  L     +     S+ A+HG   Q  RM++ ++F      
Sbjct: 305 LRSHLKKKSIVFFSSCKEVQYLFRVFCRLRPGLSILALHGKQQQMKRMEVYNDFVRKKSA 364

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   + K +
Sbjct: 365 VLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEGGEALLVLLPSEEKGM 424

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             +++L +KKV      ++    P + +DI      R    + Q     +R ++ + S  
Sbjct: 425 --VQQLTQKKVPVNEIKIN----PEKLVDI----QKRLEAFLAQDQELKERAQRCFVSYL 474

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
             + L +++++  + +      A SLG     P     +   KL  K
Sbjct: 475 RSVYLMKNKEVFNVNKLPLAEYALSLGL-AVAPRVRFLQRIQKLATK 520


>gi|146305516|ref|YP_001185981.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina ymp]
 gi|145573717|gb|ABP83249.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina ymp]
          Length = 458

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 145/404 (35%), Positives = 220/404 (54%), Gaps = 16/404 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L LS  +   +   GY + TPIQ  ++PL+L+  D+   A+TG+GKTA+F + +L  
Sbjct: 6   FASLPLSAAMQANLAAIGYAEMTPIQAASLPLILKGRDLIAQAKTGSGKTAAFGIGLLHP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L     R    + L+L PTRELA QVA    +  +  +    L +  G+PF  Q   LE 
Sbjct: 66  L---NPRYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI +H  +G L ++ +  LV+DEADRMLDMGF+  I  I    P  RQTL
Sbjct: 123 GAHVIVGTPGRIQEHLRKGTLKVDGLNTLVLDEADRMLDMGFVDSISEIIEQTPARRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++  FL+ P+R+EV       +  +  +     Q  +  + L +  + 
Sbjct: 183 LFSATYPAGIEQLAARFLRTPERVEVEAQHDDGQIEQRFYEIAPGQRMEAVSTLLRHFRK 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  + FC  ++    L   LE +  S  A+HG+++QR R +IL+ F   ++ ++VA
Sbjct: 243 ----QPVVAFCATRQQCDELAAQLEAEKISAAALHGDLEQRDRDQILALFANRSLSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   AE +IHRIGR+GRAG  G A +LVA  +     AIE
Sbjct: 299 TDVAARGLDIAGLEMVINVELSRDAEVHIHRIGRSGRAGEKGLALSLVAPAEAGRAQAIE 358

Query: 362 KLIEKKVDWLNGDLSS-----LNPPLEKIDIAQHNHARKNNPIP 400
            L  +++ W     +      L PP+  + IA     RK+   P
Sbjct: 359 TLQGRELAWYPLPAAKASGEPLLPPMHTLCIAA---GRKDKLRP 399


>gi|104783928|ref|YP_610426.1| ATP-dependent RNA helicase DbpA [Pseudomonas entomophila L48]
 gi|95112915|emb|CAK17643.1| ATP-dependent RNA helicase [Pseudomonas entomophila L48]
          Length = 461

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 129/373 (34%), Positives = 208/373 (55%), Gaps = 8/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L LS  ++  +   GY   TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 8   FATLPLSAAMLANLDALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNP 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     R    + L+L PTRELA QVA    +  +  +    L +  G+    Q   LE 
Sbjct: 68  I---NPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEH 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H ++G L+++ +  LV+DEADRMLDMGF   I +I    P  RQTL
Sbjct: 125 GAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++++F++ P++++V    S ++  +        Q  +    +      
Sbjct: 185 LFSATYPAGIEQLAKDFMRQPQQVKVEALHSDSQIEQRFIEIDPQQRLEAVTRVL----G 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ + FC  K+   +L   L  +G    A+HG+++QR R ++L+ F   +  ++VA
Sbjct: 241 HYRPQSCVAFCFTKQQCEDLVTHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   AE ++HR+GRTGRAG  G A +LVA  +     AIE
Sbjct: 301 TDVAARGLDIDGLDLVINVELARDAEIHVHRVGRTGRAGEKGVAISLVAPAEGHRAQAIE 360

Query: 362 KLIEKKVDWLNGD 374
            L  K + W   D
Sbjct: 361 DLQNKPLRWEQLD 373


>gi|6324620|ref|NP_014689.1| Dbp5p [Saccharomyces cerevisiae S288c]
 gi|1708152|sp|P20449|DBP5_YEAST RecName: Full=ATP-dependent RNA helicase DBP5; AltName: Full=DEAD
           box protein 5; AltName: Full=Helicase CA5/6; AltName:
           Full=Ribonucleic acid-trafficking protein 8
 gi|160380623|sp|A6ZNQ1|DBP5_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP5; AltName: Full=DEAD
           box protein 5; AltName: Full=Helicase CA5/6; AltName:
           Full=Ribonucleic acid-trafficking protein 8
 gi|1353268|gb|AAB01679.1| Dbp5p [Saccharomyces cerevisiae]
 gi|1420175|emb|CAA99237.1| DBP5 [Saccharomyces cerevisiae]
 gi|151945675|gb|EDN63916.1| RNA helicase [Saccharomyces cerevisiae YJM789]
 gi|285814935|tpg|DAA10828.1| TPA: Dbp5p [Saccharomyces cerevisiae S288c]
          Length = 482

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 99/373 (26%), Positives = 181/373 (48%), Gaps = 17/373 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +LGL+P+++  +    + KP+ IQ + +PL+L     ++   +Q+GTGKTA+F L M
Sbjct: 93  SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 152

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           LT +         P+ + L P+RELA Q  +  ++ GK   +T  L++   P   +  K 
Sbjct: 153 LTRV---NPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIV---PDSFEKNKQ 206

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++      +     +   L      ++ +  + +   G       +   +P   Q
Sbjct: 207 INAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQ 266

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT  D +++ ++  + N   +E+ T     + I+  ++    +  K   L +   
Sbjct: 267 LVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTEL-- 324

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+ + IIF   KK    L   L+ +G  V  +HG++  + R +++ +F+EG  +++
Sbjct: 325 YGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVL 384

Query: 300 VASDLAARGLDIPDVGHVFNFDVPN------RAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           + +++ ARG+DIP V  V N+D+P           YIHRIGRTGR GR G A + V  ++
Sbjct: 385 ITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 444

Query: 354 IKH-IDAIEKLIE 365
             + + AI+K   
Sbjct: 445 SFNILSAIQKYFG 457


>gi|220934849|ref|YP_002513748.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219996159|gb|ACL72761.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 447

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 156/376 (41%), Positives = 226/376 (60%), Gaps = 6/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+  ++ A+ + GY  PTPIQ + IP VL+  D+   AQTGTGKTA F LP+L 
Sbjct: 6   KFADLGLADPLLRALEETGYESPTPIQAQAIPEVLKGRDLRAAAQTGTGKTAGFTLPILQ 65

Query: 62  ---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                   ++    PR L+L PTRELAAQV ++ E YGK   L   ++ GG+    Q + 
Sbjct: 66  LLSHRPALKSGPGRPRCLVLTPTRELAAQVHESVETYGKYLTLRSLVMFGGVNINPQIRA 125

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L    D+++ TPGR+LDH  +  + ++ +EILV+DEADRMLDMGFI  I+ I  L+P  R
Sbjct: 126 LRGQVDIIVATPGRLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIHDIRRIMKLLPARR 185

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT +DE++ +++  L NP  +EV   ++TAE ++       +   +        
Sbjct: 186 QNLLFSATFSDEMRALADGILTNPASVEVAARNTTAERVQQQVHLVESHAKRDLLSHL-- 243

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              Q+  +  ++F   K     L   L K G    AIHGN  Q +R K L  FK G I +
Sbjct: 244 -IKQNQWQQVLVFTRTKHGANRLAEKLSKDGIPAAAIHGNKSQAARTKALDQFKNGRIPV 302

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  +  V NF++PN  E+Y+HRIGRTGRAG  G A +LV +E+++ + 
Sbjct: 303 LVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGAAGAALSLVDREEMRLLT 362

Query: 359 AIEKLIEKKVDWLNGD 374
           +IE+LI + ++ +  +
Sbjct: 363 SIERLIRRPIERIQTE 378


>gi|159491657|ref|XP_001703776.1| subunit of exon junction complex [Chlamydomonas reinhardtii]
 gi|158270457|gb|EDO96302.1| subunit of exon junction complex [Chlamydomonas reinhardtii]
          Length = 435

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 91/389 (23%), Positives = 156/389 (40%), Gaps = 16/389 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L L P+++ A+ D G+  P+ +Q + IP  +  +DV   A++G GKTA FVL +L  
Sbjct: 42  FKELMLKPELLQAIADCGFEHPSEVQHECIPHAILGNDVLCQAKSGMGKTAVFVLSILQQ 101

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+                           F    K   +        +    +  K    
Sbjct: 102 LDPKANECHAIILCHTRELAFQICHEFTRFSARMKGVTIGNFYGGIPVTQNKETLKKAVP 161

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+                L +    ++ +    +  +      Q I  L P  +Q ++
Sbjct: 162 NIVVGTPGRIKQLAKEGALPLKHVRFFVLDECDKMLEKLDMRADCQEIFKLTPHEKQVMM 221

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  +++ V + F+ NP+ + V+  S               +  K        L   
Sbjct: 222 FSATLNQDMRGVCKKFMTNPQEVYVDDESKLTLHGLVQHYVMLHEEEKNR--KLNDLLDA 279

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF         L   L +  F    I+G +DQ  R+K+  +FKEG  +++VA+
Sbjct: 280 LDFNQVVIFVKSVARAKMLNTLLNECNFPSVCIYGGMDQEERIKVYKHFKEGKHRILVAT 339

Query: 303 DLAARGLDIPDVGHVFNFDVPNR-------------AENYIHRIGRTGRAGRHGKAFTLV 349
           DL  RG+DI  V  V N+D+P               A+ Y+HR+GR GR G  G A T V
Sbjct: 340 DLVGRGIDIERVNIVINYDMPESDDKSKGESKHGNGADTYLHRVGRAGRFGTKGLAITFV 399

Query: 350 -AKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
            ++ED   ++A++   +  +  L   + +
Sbjct: 400 SSQEDSAVLNAVQDRFDVDIKPLPEKIDA 428


>gi|229031934|ref|ZP_04187921.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1271]
 gi|228729398|gb|EEL80388.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1271]
          Length = 436

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 121/378 (32%), Positives = 205/378 (54%), Gaps = 12/378 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L 
Sbjct: 5   TFTQYDFKPFLIDAVRELRFTEPTGIQKKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLN 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNF----EKYGKNYNLTVALLIGGIPFEAQNK 117
            +   R  V++    I  PTRELA Q+ +      +   ++  +T   LIGG   +   +
Sbjct: 65  RINASREEVQLV---ITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIE 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P  
Sbjct: 122 KLKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPRN 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +     +    L  
Sbjct: 182 LQMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKH---RNKIDLVN 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q      ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 239 KMLLQFKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|156717218|ref|NP_001096151.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Xenopus (Silurana)
           tropicalis]
 gi|148921499|gb|AAI46616.1| ddx10 protein [Xenopus (Silurana) tropicalis]
          Length = 852

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 127/467 (27%), Positives = 217/467 (46%), Gaps = 15/467 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+D  LS K +  +++  Y  PT IQ +TI L LQ  DV G A+TG+GKT +F++P L
Sbjct: 73  VKFSDFPLSKKTLRGLVEGQYRLPTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFIIPAL 132

Query: 61  TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L + +         LI+ PTRELA Q  +   K G+N+  +  L+IGG   + +   +
Sbjct: 133 ECLYRQQWTSDDGLGVLIISPTRELAYQTFEVLRKVGRNHEFSAGLVIGGKDLKQETACI 192

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R   ++      +           +N+++LV+DEADR+LDMGF   +  I   +P  RQ
Sbjct: 193 HRTNILICTPGRLLQHMDETSTFHASNLQMLVLDEADRILDMGFADTMNAIVENLPKKRQ 252

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT T  ++ ++   L++P+ + V+  ++   T             ++   L    
Sbjct: 253 TLLFSATQTKSVKDLARLSLKDPEYVWVHE-NAKFSTPATLEQNYVVCELQQKINLLYSF 311

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                 K  I+F +  K V  L  +    + G  V  +HG   Q  RM++ ++F      
Sbjct: 312 IRNHLKKKSIVFFSSCKEVQYLFRAFCRLRPGIPVLVLHGKQQQMKRMEVYNDFIRKKSA 371

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ A+D+AARGLD P V  V   D P  A  YIHR+GRT R    G+A  ++   ++K +
Sbjct: 372 VLFATDIAARGLDFPAVNWVLQLDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEVKGM 431

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
                   K+++     ++ +    EK+        R    + Q+    +  ++ + S  
Sbjct: 432 F-------KQLEEKKVPINEIKINPEKL---MDVQGRLEAFLAQEQDLKETAQRCFVSYL 481

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFR-GNMPAFMLPKNRGKLND 463
             + L +++++  + +      A SLG        F+L     +   
Sbjct: 482 RSVYLMKNKEVFDVFKLPLTQYAQSLGLAVAPRVRFLLKAQNAQSTS 528


>gi|66272268|gb|AAH96386.1| ddx10 protein [Xenopus (Silurana) tropicalis]
          Length = 700

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 127/467 (27%), Positives = 217/467 (46%), Gaps = 15/467 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+D  LS K +  +++  Y  PT IQ +TI L LQ  DV G A+TG+GKT +F++P L
Sbjct: 69  VKFSDFPLSKKTLRGLVEGQYRLPTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFIIPAL 128

Query: 61  TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L + +         LI+ PTRELA Q  +   K G+N+  +  L+IGG   + +   +
Sbjct: 129 ECLYRQQWTSDDGLGVLIISPTRELAYQTFEVLRKVGRNHEFSAGLVIGGKDLKQETACI 188

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R   ++      +           +N+++LV+DEADR+LDMGF   +  I   +P  RQ
Sbjct: 189 HRTNILICTPGRLLQHMDETSTFHASNLQMLVLDEADRILDMGFADTMNAIVENLPKKRQ 248

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT T  ++ ++   L++P+ + V+  ++   T             ++   L    
Sbjct: 249 TLLFSATQTKSVKDLARLSLKDPEYVWVHE-NAKFSTPATLEQNYVVCELQQKINLLYSF 307

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                 K  I+F +  K V  L  +    + G  V  +HG   Q  RM++ ++F      
Sbjct: 308 IRNHLKKKSIVFFSSCKEVQYLFRAFCRLRPGIPVLVLHGKQQQMKRMEVYNDFIRKKSA 367

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ A+D+AARGLD P V  V   D P  A  YIHR+GRT R    G+A  ++   ++K +
Sbjct: 368 VLFATDIAARGLDFPAVNWVLQLDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEVKGM 427

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
                   K+++     ++ +    EK+        R    + Q+    +  ++ + S  
Sbjct: 428 F-------KQLEEKKVPINEIKINPEKL---MDVQGRLEAFLAQEQDLKETAQRCFVSYL 477

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFR-GNMPAFMLPKNRGKLND 463
             + L +++++  + +      A SLG        F+L     +   
Sbjct: 478 RSVYLMKNKEVFDVFKLPLTQYAQSLGLAVAPRVRFLLKAQNAQSTS 524


>gi|30681173|ref|NP_849348.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|108861892|sp|Q56X76|RH39_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 39
 gi|34365771|gb|AAQ65197.1| At4g09730 [Arabidopsis thaliana]
 gi|51968836|dbj|BAD43110.1| unnamed protein product [Arabidopsis thaliana]
 gi|51969012|dbj|BAD43198.1| unnamed protein product [Arabidopsis thaliana]
 gi|51969674|dbj|BAD43529.1| unnamed protein product [Arabidopsis thaliana]
 gi|332657387|gb|AEE82787.1| DEAD-box ATP-dependent RNA helicase 39 [Arabidopsis thaliana]
          Length = 621

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 132/490 (26%), Positives = 212/490 (43%), Gaps = 36/490 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGLS +V+ A+ +     PT IQ   IP V++R  V   + TG+GKT +++LP++ 
Sbjct: 113 NFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQ 172

Query: 62  ILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           ++ +       + + R PRT++L PTREL+ QV    +    +      L+ GG     Q
Sbjct: 173 LMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQ 232

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI----- 170
              L    D+++ TPGRIL H   G ++  +I  LV+DEAD M D GF P I+       
Sbjct: 233 EDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLN 292

Query: 171 ---TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
                      QT+L +ATMT  +QK+ +   Q  + +  +T         H F+     
Sbjct: 293 QRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLSGG 352

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             K  ALLQ L  S       ++FCN   +   + H L +   S    HG +    R++ 
Sbjct: 353 EDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVEN 412

Query: 288 LSNFKEGTIQLMVASDLAARGLDIP-DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
           L  FK+                 +  DV HV  FD P  + +Y+HR GRT R G  GK  
Sbjct: 413 LKKFKDEEGDCPTLVCTDLAARGLDLDVDHVVMFDFPKNSIDYLHRTGRTARMGAKGKVT 472

Query: 347 TLVAKEDIKHIDAIEKLI--EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           +LV+++D      IE+ +   + ++ L  D    +     I   +    ++   + ++  
Sbjct: 473 SLVSRKDQMLAARIEEAMRNNESLESLTTDNVRRDAARTHITQEKGRSVKQIREVSKQRN 532

Query: 405 GFD------------------RRKKNYSSQKSHIPLKESEKISKLQQDI-QENDADSLGF 445
             D                  R+  + S  K        EK SK ++ I +   + S+  
Sbjct: 533 SRDKPSSSSPPARSTGGKTPVRKSSSSSFSKPRKASSPPEKSSKPKRKILKTVGSRSIAA 592

Query: 446 RGNMPAFMLP 455
           RG   +   P
Sbjct: 593 RGKTGSDRRP 602


>gi|322822482|gb|EFZ28519.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 824

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 125/375 (33%), Positives = 195/375 (52%), Gaps = 9/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL   V+  VL  GY  PTPIQ K IP ++Q  DV  +A+TG+GKTA+F++PML +
Sbjct: 30  FQSFGLDKPVLDGVLRLGYNVPTPIQRKAIPPMIQGSDVVAMARTGSGKTAAFLIPMLNL 89

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  ++    R L+L PTREL+ Q+     +  K  +L  A L+GG   E Q + L   
Sbjct: 90  L-KSHSKTVGIRGLVLAPTRELSLQILRFGIQLDKFLDLRFAALVGGNSLEQQFELLGSN 148

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+L       L ++ ++ LV+DEADR+ ++G  P I  +   VP   Q  L
Sbjct: 149 PDIVVATPGRLLHIMEEASLKLSMVKCLVLDEADRLFELGLQPQIVAVMQKVPDACQRAL 208

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS--------KKCAL 234
           FSATM   L + +   L NP  I ++     ++ ++                   KK   
Sbjct: 209 FSATMPSVLAEFTSAGLHNPVVIRLDAEMKLSDKLKQSAFVVRNDEKVAALIVLLKKVIG 268

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +     S  T++  +IF   K +V  L   +E    S  A+HG +DQ +R   +  F   
Sbjct: 269 VATGDTSDGTVQQALIFVESKFHVDYLQMIMEAYLISCSAVHGQMDQEARRNAVQAFSRR 328

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +M+ +D+AARGLD+P + +V NF  P+  + ++HR+GR  RAGR G A++ +  ED 
Sbjct: 329 ETHVMIVTDVAARGLDLPLLDNVVNFSFPSTPKLFVHRVGRVARAGRSGAAYSFLTFEDF 388

Query: 355 KHIDAIEKLIEKKVD 369
            +   +   I++ + 
Sbjct: 389 PYYVDLMAFIDRPLQ 403


>gi|171909846|ref|ZP_02925316.1| DEAD/DEAH box helicase domain protein [Verrucomicrobium spinosum
           DSM 4136]
          Length = 377

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 113/375 (30%), Positives = 186/375 (49%), Gaps = 8/375 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F DLG+S  +V  + + G  KPT IQ +TIP VL    D+   AQTGTGKTA+F LPML
Sbjct: 3   TFQDLGISEALVQGLEELGITKPTAIQQQTIPHVLAHRGDLIAQAQTGTGKTAAFGLPML 62

Query: 61  TILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGG--IPFEAQN 116
             +    A+ +  +    I+ PTRELA Q+     K+ K+    + +         + Q 
Sbjct: 63  ERIIPHAAKAKAGQIDGLIVAPTRELAKQIGKQLFKFTKHVPDKIFVETITGGDDMDLQI 122

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L R   +++ TPGR++D   R  L ++ +  LV+DEAD ML +GF   ++    L   
Sbjct: 123 SRLRRPTHIVVGTPGRLMDLVQREALNLSKVRYLVLDEADEMLSLGFKKELEQFFQLTAK 182

Query: 177 TRQTLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
           +R+    FSAT+ + +Q++ E +++          +               +  K   + 
Sbjct: 183 SRKNTWLFSATIPEGIQELIEGYMEPEAHRITIDKAHVVNRDITHRYIICDRTEKLDRIS 242

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +       +   G+IFC      +NL   L  + FSV  +HG++ Q  R K++  FK+  
Sbjct: 243 E--FLEDRSEDRGVIFCRTIAGSINLAKELGTRNFSVGVLHGDLSQLERDKVMRAFKKER 300

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +Q +V +D++ARG+D+  +  V +  +P + E Y HR GRTGRAGR G +   +  ++  
Sbjct: 301 LQYLVTTDVSARGIDVVGLAFVIHHQLPEQTEYYTHRSGRTGRAGRKGLSLAFIEPKEKS 360

Query: 356 HIDAIEKLIEKKVDW 370
            I  +E  +  +   
Sbjct: 361 AITRLENELGVEFSE 375


>gi|324991749|gb|EGC23681.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK353]
          Length = 447

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 132/451 (29%), Positives = 207/451 (45%), Gaps = 12/451 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-- 118
            +L++    V+     I  P+RELAAQ+     +        + +       +   +   
Sbjct: 61  QMLDEEADTVQAV---ITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQIGK 117

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TIE+  ++T  +          
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGRDKNAQIYQIS 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L         +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 238 QLLQPYM---AMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             +EK+  K +  +  D        ++   A    +R+            ++KK     K
Sbjct: 355 RELEKMGIKFIPKMIKD-DEFQDTYDRDRRANREKSREKLDTEMLGLVKKKKKKIKPGYK 413

Query: 418 SHIPL--KESEKISKLQQDIQENDADSLGFR 446
             I     E  + +K  ++     A+    R
Sbjct: 414 KKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|291391442|ref|XP_002712440.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Oryctolagus
           cuniculus]
          Length = 665

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 119/392 (30%), Positives = 200/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADL-GL-SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            F  L  L +   + A+ + G+   T IQ K++  +L+  D+   A+TG+GKT +F++P 
Sbjct: 173 SFDSLTNLVNENTLKAIKEMGFTNMTEIQHKSVRPLLEGRDLLAAAKTGSGKTLAFLIPA 232

Query: 60  LTILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K +   R    + IL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 233 VELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK 292

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 293 LANGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTR 352

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T++          S+K  LL  
Sbjct: 353 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLF 412

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 413 TFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSG 472

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
           +++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 473 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELG 531

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + D+    +S +   LEK+
Sbjct: 532 FLRYLKQSKVPLSEFDFSWSKISDIQSQLEKL 563


>gi|216397600|gb|ACJ72832.1| DEAD box polypeptide 18 (predicted) [Oryctolagus cuniculus]
          Length = 622

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 119/392 (30%), Positives = 200/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADL-GL-SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            F  L  L +   + A+ + G+   T IQ K++  +L+  D+   A+TG+GKT +F++P 
Sbjct: 130 SFDSLTNLVNENTLKAIKEMGFTNMTEIQHKSVRPLLEGRDLLAAAKTGSGKTLAFLIPA 189

Query: 60  LTILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K +   R    + IL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 190 VELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK 249

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 250 LANGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTR 309

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T++          S+K  LL  
Sbjct: 310 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLF 369

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 370 TFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSG 429

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
           +++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 430 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELG 488

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + D+    +S +   LEK+
Sbjct: 489 FLRYLKQSKVPLSEFDFSWSKISDIQSQLEKL 520


>gi|51968848|dbj|BAD43116.1| unnamed protein product [Arabidopsis thaliana]
          Length = 621

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 132/490 (26%), Positives = 211/490 (43%), Gaps = 36/490 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGLS +V+ A+ +     PT IQ   IP V++R  V   + TG+GKT +++LP++ 
Sbjct: 113 NFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQ 172

Query: 62  ILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           ++ +       + + R PRT++L PTREL+ QV    +    +      L+ GG     Q
Sbjct: 173 LMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQ 232

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI----- 170
              L    D++  TPGRIL H   G ++  +I  LV+DEAD M D GF P I+       
Sbjct: 233 EDSLNNAIDMVAGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLN 292

Query: 171 ---TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
                      QT+L +ATMT  +QK+ +   Q  + +  +T         H F+     
Sbjct: 293 QRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLSGG 352

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             K  ALLQ L  S       ++FCN   +   + H L +   S    HG +    R++ 
Sbjct: 353 EDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVEN 412

Query: 288 LSNFKEGTIQLMVASDLAARGLDIP-DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
           L  FK+                 +  DV HV  FD P  + +Y+HR GRT R G  GK  
Sbjct: 413 LKKFKDEEGDCPTLVCTDLAARGLDLDVDHVVMFDFPKNSIDYLHRTGRTARMGAKGKVT 472

Query: 347 TLVAKEDIKHIDAIEKLI--EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           +LV+++D      IE+ +   + ++ L  D    +     I   +    ++   + ++  
Sbjct: 473 SLVSRKDQMLAARIEEAMRNNESLESLTTDNVRRDAARTHITQEKGRSVKQIREVSKQRN 532

Query: 405 GFD------------------RRKKNYSSQKSHIPLKESEKISKLQQDI-QENDADSLGF 445
             D                  R+  + S  K        EK SK ++ I +   + S+  
Sbjct: 533 SRDKPSSSSPPARSTGGKTPVRKSSSSSFSKPRKASSPPEKSSKPKRKILKTVGSRSIAA 592

Query: 446 RGNMPAFMLP 455
           RG   +   P
Sbjct: 593 RGKTGSDRRP 602


>gi|315649347|ref|ZP_07902436.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315275335|gb|EFU38704.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 448

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 129/438 (29%), Positives = 221/438 (50%), Gaps = 14/438 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG++  +   + + G V P+P+Q + IP +L+  DV   +QTGTGKT +++LP+L 
Sbjct: 5   TFHTLGITEDLSSRLAEFGIVTPSPVQAEAIPPILEGKDVLATSQTGTGKTLAYLLPVLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++  + LIL PT+ELA Q+    E+YG+   + V  LIGG   + Q +KL+ 
Sbjct: 65  SIDP---EIKGAQKLILAPTQELAVQIVRESERYGETRGIGVLGLIGGAAAKRQIEKLKS 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+ +     KL M+ +  +V+DE D++ ++G    +  I       RQ +
Sbjct: 122 HPQLIVGTPGRVRELIEIRKLKMHQVTTIVVDEVDQVFNLGGAGDVDRILRSALRDRQLV 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
             SAT++ E  ++ +  +  P  I ++    T   +EH     +    +    + + +  
Sbjct: 182 FLSATVSPETAELVKKEMDQPVEIGIDPEQRTPSALEH---YYFVTEERDKLDMLRRVVR 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F N  +++  +   L   G +  AI+G+ D+ +R ++L+ F+EG  +L+VA
Sbjct: 239 HYNPDRAIVFVNATEDLAEVEAKLNYLGLNAAAIYGDADKMTRSRVLNAFREGRTKLLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDI  +G V N+D P  AE+Y HR GRTGR GR G A TLV       +    
Sbjct: 299 SDVAARGLDIEGLGMVINYDPPIDAEHYTHRAGRTGRMGRSGMAITLVTDRQTFIMRKFN 358

Query: 362 KLIEKKVDW---LNGDLSSLNP-PLEKIDIAQ---HNHARKNNPIPQKSTGFDRRKKNYS 414
           + +   ++      G + +    P ++   A+      ARK+ P   K      + K  S
Sbjct: 359 RELGISIEERALYGGKVRTPRSAPPDRRSGARGPAGETARKDKPA-GKPASISVQGKAGS 417

Query: 415 SQKSHIPLKESEKISKLQ 432
            + S     E E+  K +
Sbjct: 418 GKASGERQSERERDRKNK 435


>gi|330947853|ref|XP_003306985.1| hypothetical protein PTT_20304 [Pyrenophora teres f. teres 0-1]
 gi|311315219|gb|EFQ84923.1| hypothetical protein PTT_20304 [Pyrenophora teres f. teres 0-1]
          Length = 893

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 129/401 (32%), Positives = 217/401 (54%), Gaps = 36/401 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ K +PL+LQ  DV G+A+TG+GKTA+FV+PM+  
Sbjct: 79  FQAMGLNAALLKAIAQKGFKIPTPIQRKAVPLMLQGEDVVGMARTGSGKTAAFVIPMIQK 138

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+V   R +I+ P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 139 LKAHSAKVGA-RGIIMSPSRELALQTLKVVKELGRGTDLRTILLVGGDSLEEQFSSMTTN 197

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L ++++  +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 198 PDIIIATPGRFLHLKVEMGLDLSSVRYIVFDEADRLFEMGFAAQLSEILHALPASRQTLL 257

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA---------------- 226
           FSAT+   L + +   LQ PK I ++  S  +  ++  +    +                
Sbjct: 258 FSATLPKSLVEFARAGLQEPKLIRLDAESKISPDLKSAYFTIKSGDRDGALLHLLDNVIK 317

Query: 227 -------------------QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
                                SKK    +  ++     ++ IIF   K  V  L + L  
Sbjct: 318 VPVGETDASKKAKEDAEKASNSKKRKRSEGFVKDVPIAESTIIFAATKHRVEYLSNLLRN 377

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            G++V  ++GN+DQ +R + + +F+ G  +++V +D+AARG+D+P + HV N+D P++ +
Sbjct: 378 AGYAVSYVYGNLDQTARKEQIQDFRTGLTRILVVTDVAARGVDMPHINHVINYDFPSQPK 437

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            ++HR+GRT RAGR G A++L    D+ ++  ++  + K++
Sbjct: 438 IFVHRVGRTARAGRKGWAYSLCRHVDLPYLIDLQLFLGKRL 478


>gi|50365342|ref|YP_053767.1| ATP-dependent RNA helicase [Mesoplasma florum L1]
 gi|50363898|gb|AAT75883.1| ATP-dependent RNA helicase [Mesoplasma florum L1]
          Length = 666

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 125/448 (27%), Positives = 218/448 (48%), Gaps = 11/448 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +L LS KV+ A+  A + + T IQ + IPL L+  ++ G + TGTGKTASFVLP+L
Sbjct: 1   MTFKELQLSDKVLVALEKANFNEATEIQARAIPLFLEGKNIFGKSSTGTGKTASFVLPIL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +E  + RV+     I+ PTRELA Q+ +    +G      V   + G        K  
Sbjct: 61  EKIEPNKRRVQAV---IMAPTRELAMQIVNQIRIFGSRIENLVIAPLIGGADMRDQIKRL 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           + + +++ TPGR+ DH NR  L ++++  +++DEAD ML MGF   I  +   V    Q 
Sbjct: 118 KDSQIVVGTPGRVNDHLNRKTLKLDDVRTIILDEADEMLKMGFKNEIDALFERVSPDVQI 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT + ++ +++ +++     IE+         I + F+ T     +   +      
Sbjct: 178 GLFSATTSPKVMQIANDYMNEYDVIEIENQIEVNANITNTFIFTKGFSKEDLIVKV---F 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +   K  I+F N K +   +  +LE  G     I+G+  Q  R + ++ F+   I ++V
Sbjct: 235 KKHKPKRAIVFSNTKNHTDKIADNLEAAGIRAIVINGDKRQSQRSRAIAKFRNNEISVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI-KHIDA 359
           A+D+ ARG+DI  V +V N+DV    E+++HRIGRTGR    G + T V  +++ + I  
Sbjct: 295 ATDVVARGIDITGVDYVINYDVSMEDEHFVHRIGRTGRNNTKGDSITFVQNQNVLRQIKG 354

Query: 360 IEKLIEKKVDWLN-GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           IEK     +D +   +   ++    + +  + +   + +         +R  +  S +  
Sbjct: 355 IEKNFNLIIDEMQISEYGEVDKQEGRGNSNRSSRGDRRDSGRGDRRDSNRGDRRDSGRNE 414

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFR 446
               ++S +    +++   ND       
Sbjct: 415 R---RDSNRGRDDRRNAGHNDRRDFAHG 439


>gi|85000681|ref|XP_955059.1| DEAD-box family helicase [Theileria annulata strain Ankara]
 gi|65303205|emb|CAI75583.1| DEAD-box family helicase, putative [Theileria annulata]
          Length = 451

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 101/392 (25%), Positives = 177/392 (45%), Gaps = 19/392 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ DAG+  P+ +Q +TIP  +   D+   A++G GKTA FVL +L  
Sbjct: 56  FRDFFLKPEILRAISDAGFEHPSEVQHETIPHAITGVDILCQAKSGMGKTAVFVLSILQQ 115

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL--- 119
           L+      +      ++P   ++     +  +               +P           
Sbjct: 116 LDVEAEEGKRDADDNVKPVSRVSCVGISHTRELAFQIKNEFDRFSKYLPQVRCEVVYGGV 175

Query: 120 ------------ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM-GFIPY 166
                        +   +L+ TPGR+L       L M++++  V+DE D+ L+       
Sbjct: 176 PIQKDVAMLKDPAKTPHILVGTPGRLLALVKAKHLNMDSVKHFVLDECDKCLEKLDMRQD 235

Query: 167 IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
           +Q+I    P  +Q + FSATM ++++++ + F+Q+P  + V+  S         +    A
Sbjct: 236 VQSIFLSTPKKKQVMFFSATMNNDIRELCKRFMQSPVEVFVDDESKLTLHGLLQYYVKLA 295

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           +  K        L         IIF       V L + L +  F   AIH  +DQ  R+ 
Sbjct: 296 ESDKNR--KLNDLLDTLEFNQVIIFVKSVSRAVTLNNLLTECNFPSIAIHAGLDQSERIN 353

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
             + FK    ++MVA+DL  RG+D+  V  V N+D+P+  ++Y+HR+GR GR G  G A 
Sbjct: 354 RYTQFKNFDKRIMVATDLFGRGIDVERVNIVINYDMPDSTDSYLHRVGRAGRFGTKGLAI 413

Query: 347 TLV-AKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
           T V + ED   ++ ++K  E  +  +   + +
Sbjct: 414 TFVSSPEDSSQLEDVQKRFEVNISEIPATIDT 445


>gi|15229677|ref|NP_188490.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|75335038|sp|Q9LIH9|RH51_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 51
 gi|9294321|dbj|BAB02218.1| DEAD-box ATP-dependent RNA helicase [Arabidopsis thaliana]
 gi|17979083|gb|AAL49809.1| putative DEAD box helicase protein [Arabidopsis thaliana]
 gi|20465335|gb|AAM20071.1| putative DEAD box helicase protein [Arabidopsis thaliana]
 gi|332642600|gb|AEE76121.1| DEAD-box ATP-dependent RNA helicase 51 [Arabidopsis thaliana]
          Length = 568

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 124/389 (31%), Positives = 214/389 (55%), Gaps = 6/389 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L LS +   A+ + G+   T IQ  +I  +L+  DV G A+TG+GKT +F++P +
Sbjct: 89  VTFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAV 148

Query: 61  TILEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L K R   R    +I + PTRELA Q  +  E+  K+++ TV+++IGG    ++ +++
Sbjct: 149 ELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRI 208

Query: 120 ERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             G++++I TPGR +    N    +  +++ LVIDEADR+L+  F   +  I  ++P TR
Sbjct: 209 ASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTR 268

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT LFSAT T +++ ++   L +P  ++V+       T E          SK+  +L   
Sbjct: 269 QTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKV-TNEGLEQGYCVVPSKQRLILLIS 327

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  ++F +  K+V      ++     V  IHG +DQ  R K   +F +    +
Sbjct: 328 FLKKNLNKKIMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGI 387

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  +D P++   YIHR+GRT R  G  GKA  ++  E+++ I
Sbjct: 388 LLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPEELQFI 447

Query: 358 DAIE--KLIEKKVDWLNGDLSSLNPPLEK 384
             ++  K+  K++++    LS++   LEK
Sbjct: 448 RYLKAAKVPVKELEFNEKRLSNVQSALEK 476


>gi|327272752|ref|XP_003221148.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 2
           [Anolis carolinensis]
          Length = 399

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 127/437 (29%), Positives = 206/437 (47%), Gaps = 56/437 (12%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG++  +  A    G+  PT IQ+++IPL LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 17  SFKELGVTEVLCEACDQLGWKTPTKIQVESIPLALQGRDIIGLAETGSGKTGAFALPILQ 76

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R      L+L PTRELA Q+++ FE  G +  +  A+++GGI   AQ+  L +
Sbjct: 77  ALLETPQRFF---ALVLTPTRELAFQISEQFEALGSSIGVQTAVIVGGIDMMAQSLALAK 133

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V+I TPGR++DH  N     +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 134 KPHVIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 193

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L++P +  V++   T E +           SK        + 
Sbjct: 194 FLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKL---QQYYVFIPSKFKDSYLVYIL 250

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N       L   GF+   +HG ++Q                   
Sbjct: 251 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMNQ------------------- 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
                                      +YIHR+GRT RAGR GK+ T V + D++    I
Sbjct: 292 ---------------------------DYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 324

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           E LI KK+         +    E++  AQ   AR    + QK      R++      +  
Sbjct: 325 EHLIGKKLPAFPTQEDEVMMLTERVAEAQ-RFARME--LQQKGDKKRSREEANEPDDAEG 381

Query: 421 PLKESEKISKLQQDIQE 437
            +    K++  ++  ++
Sbjct: 382 AMGVRNKVAGGKKKKRK 398


>gi|73955178|ref|XP_536583.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
           [Canis familiaris]
          Length = 871

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 128/446 (28%), Positives = 211/446 (47%), Gaps = 14/446 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P +  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +             LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +++  
Sbjct: 131 LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINN 190

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +            N+++LV+DEADR+LDMGF   +  I   +P  RQTL
Sbjct: 191 INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTL 250

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L+NP+ I V+   +   T             ++   +      
Sbjct: 251 LFSATQTKSVKDLARLSLKNPEYIWVHE-KAKYSTPATLEQNYIVCELQQKISVLYSFLR 309

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA--IHGNIDQRSRMKILSNFKEGTIQLM 299
               K  I+F +  K V  L     +    +    +HG   Q  RM++ + F      ++
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRSAVL 369

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   + K +  
Sbjct: 370 FATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEKGM-- 427

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +++L++KKV      ++    P + ID+      +  + + Q     +R ++ + S    
Sbjct: 428 VQQLLQKKVPVKEIKIN----PEKLIDV----QKKLESFLAQDKDLKERAQRCFVSYIRS 479

Query: 420 IPLKESEKISKLQQDIQENDADSLGF 445
           + L ++++I  +        A SLG 
Sbjct: 480 VYLMKNKEIFDVSTLPVPEYALSLGL 505


>gi|325688758|gb|EGD30767.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK115]
          Length = 447

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 129/451 (28%), Positives = 203/451 (45%), Gaps = 12/451 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-- 118
            +L++    V+     I  P+RELAAQ+     +        + +       +   +   
Sbjct: 61  QMLDEEADSVQAV---ITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQIGK 117

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTI---ENWLLSTKGRNKNAQIY 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             +EK+  K +  +  D        ++   A    +R+            ++KK     K
Sbjct: 355 RELEKMGIKFIPKMIKD-DEFQDTYDRDRRANREKSREKLDTEMLGLVKKKKKKIKPGYK 413

Query: 418 SHIPL--KESEKISKLQQDIQENDADSLGFR 446
             I     E  + +K  ++     A+    R
Sbjct: 414 KKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|261409198|ref|YP_003245439.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|261285661|gb|ACX67632.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
          Length = 448

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 127/461 (27%), Positives = 221/461 (47%), Gaps = 21/461 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG++  +   + + G   P+P+Q + IP +L+  DV   +QTGTGKT +++LP+L 
Sbjct: 5   TFHTLGIAEDLSSRLAEFGIATPSPVQAEAIPPILEGKDVLATSQTGTGKTLAYLLPVLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++  + LIL PT+ELA Q+    E+YG+   + V  LIGG   + Q +KL  
Sbjct: 65  GIDP---EIKGAQKLILAPTQELAVQIVRESERYGEARGIGVLGLIGGAAAKRQIEKLRL 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+ +     KL M+ +  +V+DE D++ ++G    +  I       RQ +
Sbjct: 122 HPQLIVGTPGRVRELIEIRKLKMHQVTTIVVDEVDQVFNLGGAGDVDRILRSALRDRQLV 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
             SAT++ E  ++ +  +  P  I ++    T   +EH     +    +    + + +  
Sbjct: 182 FLSATVSPETAELVKKEMDQPVEIGIDPERRTPSALEH---YYFVSEERDKLDMLRRVVR 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F N  +++  +   L   G +  A++G+ D+ +R ++L+ F+EG  +L+VA
Sbjct: 239 HYNPDRAIVFVNATEDLAEVEAKLNYLGLNAAALYGDADKMTRSRVLNAFREGRTKLLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SD+AARGLDI  +G V N+D P  AE+Y HR GRTGR GR G A TLV       +    
Sbjct: 299 SDVAARGLDIEGLGMVINYDPPIDAEHYTHRAGRTGRMGRSGMAITLVTDRQTFIMRKFN 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           + +   ++        +  P         +        P+ S     RK   + + + I 
Sbjct: 359 RELGISIEERALYGGKVRTP--------RSAPTDRGQGPRGSAAGAARKDKPARKPASIS 410

Query: 422 LKESE---KISKLQQDIQENDADSLGFRGNMPAFMLPKNRG 459
           +       K S  +Q  +E D  + G     P ++  K   
Sbjct: 411 VNGKSGNGKASGERQSERERDRKNKG----APKWLKNKPPR 447


>gi|42522889|ref|NP_968269.1| RNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39574085|emb|CAE79262.1| RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 460

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 114/368 (30%), Positives = 186/368 (50%), Gaps = 10/368 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ FAD  L P ++  +      KPT IQ + IPL++    V G+++TG+GKT ++VLP+
Sbjct: 53  MNTFADFELLPSLLKTLKTLKISKPTDIQKQAIPLIMSHQAVVGVSETGSGKTLAYVLPI 112

Query: 60  LTILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
           L  L+              PR +++ P+REL  QVA  F+    +  L V   +GG+  E
Sbjct: 113 LNYLKSLEESGDPVKEENAPRAVVMVPSRELGEQVAKVFKSMTHDTRLRVRPALGGMSLE 172

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
              +      +VL+ TPGR++   N+  + + ++  L+ DEAD+MLD GF+P    I   
Sbjct: 173 QARRNTSGAFEVLLATPGRLVQMLNKDLISLRDVRFLIFDEADQMLDQGFLPDTNRIVDC 232

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
            P      LFSAT++  ++K+  +     + I      ++ + +             K  
Sbjct: 233 CPEDVNLALFSATVSKTVEKLMNDLFAKAEVI---RSKNSGKVVSTLKTKNLTVEDGKRW 289

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L + + +Q      I+F N ++    +   L  +G +     G +D+  R   L  F++
Sbjct: 290 PLFEKVLAQKVDGGTIVFANTREQCDKIAKELTDKGHACVVYRGEMDKNERRTNLKKFRD 349

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G + L+VA+DLA RGLD+ ++  V N+ +P   ENY+HR GRT RAGR G    LV + D
Sbjct: 350 GQVGLLVATDLAGRGLDVSNIARVINYHLPKEMENYLHRAGRTARAGRPGLVVNLVTERD 409

Query: 354 IKHIDAIE 361
            + I A+E
Sbjct: 410 SRLIAALE 417


>gi|152975569|ref|YP_001375086.1| DEAD/DEAH box helicase domain-containing protein [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152024321|gb|ABS22091.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 434

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 136/374 (36%), Positives = 218/374 (58%), Gaps = 7/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG+S      + + G  + TPIQ K IP+++   DV G A+TGTGKT +FVLP+L 
Sbjct: 6   KFLELGMSETFQHTLRENGIAEATPIQEKAIPVIMDGKDVIGQAKTGTGKTLAFVLPILE 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++   + ++    LI+ PTRELA Q+    +K   +      L I G    E Q KKL+
Sbjct: 66  NIDPNASDIQA---LIVAPTRELALQITTEIKKMLVHKQDIHVLAIYGGQDVEQQMKKLK 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  R  ++++N+ ++V+DEAD+ML  GF+  I++I    P  +QT
Sbjct: 123 GNTHIVVATPGRLLDHLRRETIVLSNVSMVVLDEADQMLHFGFLYDIEHILEETPENKQT 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM  +++K+++ +++ P+ I++ +   T E I            +      + + 
Sbjct: 183 MLFSATMPKDIKKLAKRYMKEPQVIQIQSAEVTVENI---KQRVIETTDRAKQDALRYVM 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +D     +IFC  K+ V  L  +L+  G++   +HG++ Q  R +++ NF+E  IQ ++
Sbjct: 240 ERDQPFLAVIFCRTKRRVTKLFTALKGYGYNCDELHGDLSQAKRERVMKNFREAKIQYLI 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLD+  V HVFN+D+P   E+YIHRIGRTGRAG  G A T VA +D  ++  I
Sbjct: 300 ATDVAARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGGTGLAITFVAPKDKMYLKEI 359

Query: 361 EKLIEKKVDWLNGD 374
           EK I   +     +
Sbjct: 360 EKYIGSTLQRQEIE 373


>gi|328773329|gb|EGF83366.1| hypothetical protein BATDEDRAFT_8371 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 460

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 132/391 (33%), Positives = 218/391 (55%), Gaps = 7/391 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL P ++ ++       P+ IQ   IP +L   D+ G A+TG+GKTA+F LP+L 
Sbjct: 34  TFESIGLRPWLIGSLKSISIRHPSEIQQACIPHILNGRDIIGGAKTGSGKTAAFALPILQ 93

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +    V     L+L P RELA Q+A+ F   G   NL +++++GG+   +Q  +L +
Sbjct: 94  KLSEDPYGVF---ALVLTPARELAFQIAEQFRVLGTGINLKLSVVVGGMDMMSQALELSQ 150

Query: 122 GADVLICTPGRILDHFN--RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              V+I TPGR++DH       +    I  LV+DEADR+LD  F   ++ I S +P  RQ
Sbjct: 151 KPHVIIATPGRLVDHIRSSSNAIHFKRIRFLVMDEADRLLDDTFSDDLEGILSQLPQKRQ 210

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLF+ATMTDE++++  +    P   E     ST E ++  ++   +      A L  ++
Sbjct: 211 TLLFTATMTDEIKELQMSSKTLPFVYECAERYSTVEKLDQQYILVSSNVR--DAYLAHIV 268

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +   + K  IIF ++ +    L   L++ G    A+H  + Q  R+  L+ FK G + ++
Sbjct: 269 RESLSGKTMIIFASKCRTCETLRIMLKELGLKSTALHAQMPQNDRLGSLAKFKSGIVPIL 328

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+ +RGLDIP V  V N+++P  A +YIHR+GRT RAG+ G + + V++ D+  I  
Sbjct: 329 IATDVGSRGLDIPTVKVVINYELPADATDYIHRVGRTARAGQGGMSLSFVSERDVDIIHN 388

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           IEK  +KK+       + +   L+++++A+ 
Sbjct: 389 IEKKTKKKMTEYTVPENDVLEILDEVNLAKR 419


>gi|171690518|ref|XP_001910184.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945207|emb|CAP71318.1| unnamed protein product [Podospora anserina S mat+]
          Length = 924

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 129/401 (32%), Positives = 211/401 (52%), Gaps = 36/401 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPLVL+R DV G+A+TG+GKTA+FV+PM+  
Sbjct: 90  FQAMGLNANLLRAITKKGFSVPTPIQRKTIPLVLERRDVVGMARTGSGKTAAFVIPMIER 149

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +V   R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q  ++   
Sbjct: 150 LKGHSPKVGA-RALILSPSRELALQTLKVVKELGRGTDLKTILLVGGDSLEEQFAQMATN 208

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 209 PDIVIATPGRFLHLKVEMNLNLSSIKYVVFDEADRLFEMGFAEQLTEILHALPSSRQTLL 268

Query: 183 FSATMTDELQKVSE-----------------------------------NFLQNPKRIEV 207
           FSAT+   L + +                                      L     I  
Sbjct: 269 FSATLPSSLVEFARAGLQEPSLVRLDAETKVSPDMESAFFSVKGGEKEGALLHILHDIIK 328

Query: 208 NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
               +     +       ++  +K    +   + + T  + IIF   K +V  + H L  
Sbjct: 329 MPMGTPEGAPKDEADPNNSRGKRKRGSDRLSFKEKPTAHSTIIFTATKHHVEYIAHLLRH 388

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            GF+V  I+G++DQ +R   + +F+ G   ++V +D+AARG+DIP + +V N+D P + +
Sbjct: 389 AGFAVSYIYGSLDQTARKIQVDDFRRGRTNILVVTDVAARGIDIPVLANVINYDFPPQPK 448

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            ++HR+GRT RAG+ G A+ LV + D+ ++  ++  + +++
Sbjct: 449 VFVHRVGRTARAGQRGWAYALVRESDLPYLIDLQLFLGRRL 489


>gi|149007640|ref|ZP_01831257.1| peptide chain release factor 2 [Streptococcus pneumoniae SP18-BS74]
 gi|147760795|gb|EDK67766.1| peptide chain release factor 2 [Streptococcus pneumoniae SP18-BS74]
          Length = 412

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 119/417 (28%), Positives = 196/417 (47%), Gaps = 12/417 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +   +  +
Sbjct: 61  QQLDEASDSVQAV---ITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T             
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  +    +
Sbjct: 237 --TQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
             +EKL    + +    +             + N  +K + +  +  G  +++K  S
Sbjct: 355 RELEKL---GIKFSPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKEKEKS 408


>gi|157131180|ref|XP_001662155.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108871623|gb|EAT35848.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 510

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 101/393 (25%), Positives = 173/393 (44%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  L L P+++  V   G+  P+ IQ   +P +L     ++   +Q+GTGKTA+FVL M
Sbjct: 124 TFEALHLKPELLQGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 183

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++    +   P+ + L PT ELA Q  +   K  K                A+  KL
Sbjct: 184 LSRVDP---KKNYPQVICLSPTYELAIQTGEVAAKMAKFCPEIKLRYAVRGEELAKGDKL 240

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             R   L      ++ +    +   G       I   +    Q
Sbjct: 241 TDHIIIGTPGKLMDWGIKYRSFDLKKITVFVLDEADVMIATQGHQDQCIRIHKQLSSRCQ 300

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSAT   E+ + +E  + NP  I +     + + I+  +V    Q  K        +
Sbjct: 301 MMFFSATYEREVMEFAEYIVPNPIVIRLAREQESLDNIKQYYVKCRTQDEKY--QAISNI 358

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   IIFC+ +K    L   + + G SV  + G +    R+ +L  F+ G  +++
Sbjct: 359 YGVITVGQAIIFCHTRKTASWLSVKMSQDGHSVAVLSGELTVEQRLAVLDRFRAGLEKVL 418

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           + +++ +RG+D+  V  V NFD+P         E Y+HRIGRTGR G++G A  LV +++
Sbjct: 419 ITTNVLSRGIDVEQVTIVVNFDLPMDQQGRADCETYLHRIGRTGRFGKNGIAINLVDSEQ 478

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
            +    +IE   +K++  L+ + S     +EKI
Sbjct: 479 SMAICRSIEAHFQKRIHLLDAENSD---DIEKI 508


>gi|66911669|gb|AAH96848.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Danio rerio]
 gi|182889788|gb|AAI65637.1| Ddx18 protein [Danio rerio]
          Length = 653

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 117/392 (29%), Positives = 196/392 (50%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP- 58
            FA L   +S   +  V + G+   T IQ KTI  +L+  DV   A+TG+GKT +F++P 
Sbjct: 160 SFASLSEVVSENTLKGVKEMGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPS 219

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  I +           ++L PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 220 IELIYKLKFMPRNGTGVIVLSPTRELAMQTYGVLKELMTHHVHTYGLIMGGSNRSAEAQK 279

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++L+ TPGR +    N    +  N++ L+IDEADR+L++GF   ++ I  L+P  
Sbjct: 280 LANGVNILVATPGRLLDHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLPKK 339

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ++LFSAT T +++ ++   L+          +    T+E          S+K  LL  
Sbjct: 340 RQSMLFSATQTRKVEDLARISLKKEPLYVGVDDNKDTATVEGLEQGYVVCPSEKRFLLLF 399

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 400 TFLKKNRKKKLMVFFSSCMSVKFHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNADSG 459

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
           +++ +D+AARGLDIP+V  +  FD P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 460 ILLCTDVAARGLDIPEVDWIVQFDPPDDPKEYIHRVGRTARGINGR-GHALLILRPEELG 518

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + ++    +S +   L+K+
Sbjct: 519 FLRFLKQAKVPLSEFEFSWTKISDIQSQLDKL 550


>gi|51010913|ref|NP_001003411.1| ATP-dependent RNA helicase DDX18 [Danio rerio]
 gi|49618963|gb|AAT68066.1| myc-regulated DEAD/H box 18 RNA helicase [Danio rerio]
          Length = 653

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 117/392 (29%), Positives = 196/392 (50%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP- 58
            FA L   +S   +  V + G+   T IQ KTI  +L+  DV   A+TG+GKT +F++P 
Sbjct: 160 SFASLSEVVSENTLKGVKEMGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPS 219

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  I +           ++L PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 220 IELIYKLKFMPRNGTGVIVLSPTRELAMQTYGVLKELMTHHVHTYGLIMGGSNRSAEAQK 279

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++L+ TPGR +    N    +  N++ L+IDEADR+L++GF   ++ I  L+P  
Sbjct: 280 LANGVNILVATPGRLLDHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLPKK 339

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ++LFSAT T +++ ++   L+          +    T+E          S+K  LL  
Sbjct: 340 RQSMLFSATQTRKVEDLARISLKKEPLYVGVDDNKDTATVEGLEQGYVVCPSEKRFLLLF 399

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 400 TFLKKNRKKKLMVFFSSCMSVKFHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNADSG 459

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
           +++ +D+AARGLDIP+V  +  FD P+  + YIHR+GRT R   GR G A  ++  E++ 
Sbjct: 460 ILLCTDVAARGLDIPEVDWIVQFDPPDDPKEYIHRVGRTARGINGR-GHALLILRPEELG 518

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + ++    +S +   L+K+
Sbjct: 519 FLRFLKQAKVPLSEFEFSWTKISDIQSQLDKL 550


>gi|326526589|dbj|BAJ97311.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 880

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 129/389 (33%), Positives = 203/389 (52%), Gaps = 9/389 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +V   V   GY  PTPIQ K +PL+L   DV  +A+TG+GKTA+F++PML  
Sbjct: 75  FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGLDVAAMARTGSGKTAAFLVPMLQR 134

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L          R LIL PTR+LA Q      + GK  +L   L++GG   E+Q + L   
Sbjct: 135 LRHRDPGAG-IRALILSPTRDLATQTLKFTHQLGKFTDLKTGLIVGGGSMESQFEVLADN 193

Query: 123 ADVLICTP-GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TP   +        L + ++E +V DEAD +  +GF   +  I   +  TRQTL
Sbjct: 194 PDIVIATPGRFVHILSMVDDLSLRSVEYVVFDEADSLFSLGFAEQLHKILHKLSDTRQTL 253

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   L + ++  L++P+ I ++     +  +      T  Q  K  ALL  + + 
Sbjct: 254 LFSATMPKALAEFAKAGLRDPQVIRLDLDKKISPDL-KLAFFTLRQEEKLAALLYLVREH 312

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  +IF + K +V  L     ++G      +G +DQ +R   +S F+     L++ 
Sbjct: 313 ISSEEQTMIFVSTKYHVEFLNILFREEGLEASLSYGAMDQEARTIHISRFRARKTMLLIV 372

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP + +V N+D P + + ++HR+GR  R GR G AFT V  ED+  +  + 
Sbjct: 373 TDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRTGTAFTFVTSEDMPFLLDLH 432

Query: 362 KLIEKKV------DWLNGDLSSLNPPLEK 384
             + K +      D L  D+  +N  +++
Sbjct: 433 LFLSKPLRPAPTEDELLKDMDGMNLKIDQ 461


>gi|326514620|dbj|BAJ96297.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 873

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 129/389 (33%), Positives = 203/389 (52%), Gaps = 9/389 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +V   V   GY  PTPIQ K +PL+L   DV  +A+TG+GKTA+F++PML  
Sbjct: 68  FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGLDVAAMARTGSGKTAAFLVPMLQR 127

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L          R LIL PTR+LA Q      + GK  +L   L++GG   E+Q + L   
Sbjct: 128 LRHRDPGAG-IRALILSPTRDLATQTLKFTHQLGKFTDLKTGLIVGGGSMESQFEVLADN 186

Query: 123 ADVLICTP-GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TP   +        L + ++E +V DEAD +  +GF   +  I   +  TRQTL
Sbjct: 187 PDIVIATPGRFVHILSMVDDLSLRSVEYVVFDEADSLFSLGFAEQLHKILHKLSDTRQTL 246

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   L + ++  L++P+ I ++     +  +      T  Q  K  ALL  + + 
Sbjct: 247 LFSATMPKALAEFAKAGLRDPQVIRLDLDKKISPDL-KLAFFTLRQEEKLAALLYLVREH 305

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  +IF + K +V  L     ++G      +G +DQ +R   +S F+     L++ 
Sbjct: 306 ISSEEQTMIFVSTKYHVEFLNILFREEGLEASLSYGAMDQEARTIHISRFRARKTMLLIV 365

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP + +V N+D P + + ++HR+GR  R GR G AFT V  ED+  +  + 
Sbjct: 366 TDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRTGTAFTFVTSEDMPFLLDLH 425

Query: 362 KLIEKKV------DWLNGDLSSLNPPLEK 384
             + K +      D L  D+  +N  +++
Sbjct: 426 LFLSKPLRPAPTEDELLKDMDGMNLKIDQ 454


>gi|326504194|dbj|BAJ90929.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 873

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 129/389 (33%), Positives = 203/389 (52%), Gaps = 9/389 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL  +V   V   GY  PTPIQ K +PL+L   DV  +A+TG+GKTA+F++PML  
Sbjct: 68  FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGLDVAAMARTGSGKTAAFLVPMLQR 127

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L          R LIL PTR+LA Q      + GK  +L   L++GG   E+Q + L   
Sbjct: 128 LRHRDPGAG-IRALILSPTRDLATQTLKFTHQLGKFTDLKTGLIVGGGSMESQFEVLADN 186

Query: 123 ADVLICTP-GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D++I TP   +        L + ++E +V DEAD +  +GF   +  I   +  TRQTL
Sbjct: 187 PDIVIATPGRFVHILSMVDDLSLRSVEYVVFDEADSLFSLGFAEQLHKILHKLSDTRQTL 246

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   L + ++  L++P+ I ++     +  +      T  Q  K  ALL  + + 
Sbjct: 247 LFSATMPKALAEFAKAGLRDPQVIRLDLDKKISPDL-KLAFFTLRQEEKLAALLYLVREH 305

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             + +  +IF + K +V  L     ++G      +G +DQ +R   +S F+     L++ 
Sbjct: 306 ISSEEQTMIFVSTKYHVEFLNILFREEGLEASLSYGAMDQEARTIHISRFRARKTMLLIV 365

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP + +V N+D P + + ++HR+GR  R GR G AFT V  ED+  +  + 
Sbjct: 366 TDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRTGTAFTFVTSEDMPFLLDLH 425

Query: 362 KLIEKKV------DWLNGDLSSLNPPLEK 384
             + K +      D L  D+  +N  +++
Sbjct: 426 LFLSKPLRPAPTEDELLKDMDGMNLKIDQ 454


>gi|309364627|emb|CAP24933.2| CBR-VBH-1 protein [Caenorhabditis briggsae AF16]
          Length = 692

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 130/408 (31%), Positives = 201/408 (49%), Gaps = 32/408 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+D G  P V+  V  +GY KPTP+Q  +IP +L   D+   AQTG+GKTA+F+LP++ 
Sbjct: 164 NFSDAGFGPAVMENVTRSGYTKPTPVQKHSIPTLLFNRDLMSCAQTGSGKTAAFLLPIIQ 223

Query: 62  ILEKGRA---------------------------RVRMPRTLILEPTRELAAQVADNFEK 94
            +  G                             R   P  L+L PTRELA Q+     K
Sbjct: 224 HIMAGGPDMIKTVSSATNIFGFKVILQPTFNNGRRTYYPSALVLSPTRELAIQIHKEAAK 283

Query: 95  YGKNYN-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVID 153
           +    N  T  L  G   +  Q  +L  G  +LI TPGR++D   +G + ++    LV+D
Sbjct: 284 FSYKTNLQTAILYGGRENYRDQVNRLRSGVHILIATPGRLIDIIEQGFIGLSGCRYLVLD 343

Query: 154 EADRMLDMGFIPYIQNIT---SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           EADRMLDMGF P I+ I          R T +FSAT   E+Q ++++FL+          
Sbjct: 344 EADRMLDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQLLAKDFLKENYVFLAVGR 403

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
             +        +    +  K+  L+  +L ++D     ++F   K+    L + L +Q  
Sbjct: 404 VGSTSENIEQRLLWVNEMEKRQNLMD-ILMNEDATNLVLVFVETKRGANELAYFLNRQQI 462

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
              +IHG++ Q  R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P  ++ Y+
Sbjct: 463 RSVSIHGDLKQIERERNLEMFRSGQFPILVATAVAARGLDIPNVRHVVNYDLPGDSDEYV 522

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           HRIGRTGR G  G A +    ++      ++ LI +    +   L  +
Sbjct: 523 HRIGRTGRCGNLGIATSFFNDKNRGIGRDLKTLIMEANQEVPEWLHQV 570


>gi|294101359|ref|YP_003553217.1| DEAD/DEAH box helicase domain protein [Aminobacterium colombiense
           DSM 12261]
 gi|293616339|gb|ADE56493.1| DEAD/DEAH box helicase domain protein [Aminobacterium colombiense
           DSM 12261]
          Length = 555

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 123/401 (30%), Positives = 206/401 (51%), Gaps = 12/401 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F    L  +++ A+ + G+  PTP+Q + +   +   D+   A+TG+GKT +F+LP+L 
Sbjct: 5   NFEQYELRAELLKALAEKGFSTPTPVQDRVLSEKIFEKDIIVRAKTGSGKTLAFLLPLLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +  G    +    LIL PTREL+ Q+    + +G   N++ A L+GG+    Q + L  
Sbjct: 65  KITAGERESK---VLILSPTRELSQQIWKEAKWFGNYINVSAASLVGGMDMSQQIRSLRD 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G+ V+  TPGR+LDH  RG L  + I+I+V+DE D MLD+GF   ++ I   +P  ++  
Sbjct: 122 GSAVVTGTPGRVLDHIRRGTLDTSGIKIVVLDEGDHMLDLGFKEELEAILDSLPNCQRVW 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  E++ +++ +L+ P  I +       E I       Y   ++        +  
Sbjct: 182 LFSATMPAEIKNLAKRYLKTPVFISLTEEGEAHEDI---THEVYLVPTRHKEEGLINVLL 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +     I+FC+ +   V L   L  + F    +HG + QR R   LS F+ G   L+VA
Sbjct: 239 WEKPSRAIVFCHTRAETVELTRRLHDENFQAMCLHGEMSQRERNMALSQFRSGRTPLLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +++AARGLD+  V HV    +P+  E ++HR GRTGRAG  G+   +++ ++     ++ 
Sbjct: 299 TNVAARGLDVEGVSHVIQMGLPDNRETFVHRSGRTGRAGHEGRNLLVLSPKEATGFKSMV 358

Query: 362 KLIEKKVDWLN-GDLSSLNPP-----LEKIDIAQHNHARKN 396
           K     + W N  D   +         E++  A+H    +N
Sbjct: 359 KTSTIPITWKNVPDPKDIRKKQRISYEERVFAAEHYETPEN 399


>gi|195938012|ref|ZP_03083394.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4024]
          Length = 457

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 127/370 (34%), Positives = 201/370 (54%), Gaps = 9/370 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +  + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKDTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDW 370
             +++ K++W
Sbjct: 357 SDMLQIKLNW 366


>gi|116491279|ref|YP_810823.1| superfamily II DNA/RNA helicase [Oenococcus oeni PSU-1]
 gi|116092004|gb|ABJ57158.1| Superfamily II DNA and RNA helicase [Oenococcus oeni PSU-1]
          Length = 454

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 140/457 (30%), Positives = 217/457 (47%), Gaps = 34/457 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L  ++V A+    + KPT +Q + IP ++   DV G +QTG+GKT +F+LP+  
Sbjct: 4   QFGQFNLKTEIVKAIDGISFNKPTKVQKRIIPPIIAGRDVVGQSQTGSGKTHAFLLPIFN 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG--------KNYNLTVALLIGGIPFE 113
            L+      +     I  P+RELA Q+   F  +            +L +A  IGG    
Sbjct: 64  GLDPSLEETQAV---ITSPSRELAEQLYQAFRDFQKSLAAIDENFADLRIADYIGGTDRN 120

Query: 114 AQNKK-LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
            Q ++   +   ++I TPGR+ D  ++  LL+N     V+DEAD  LDMGF+  +  I S
Sbjct: 121 KQIRQLERKQPQIVIGTPGRLKDFLSKNFLLVNQNRFFVVDEADMALDMGFLEDVDTIAS 180

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +P   Q L+FSAT+ D+L    + +++NP   E+   +  A+TI        A  SK  
Sbjct: 181 AMPDNLQMLVFSATIPDKLTPFLKRYMKNPLIEEIPVSTVVADTI---DNYLLATKSKDK 237

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             +   L ++      ++F N K+ V  L H L+ QG     +HG I+ R R + +   K
Sbjct: 238 NEVIFDLLTRKESYLTLVFANTKERVHELAHFLDSQGLKAAEVHGGIEPRERRRTMKRIK 297

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +   Q +VA+DLAARGLDI  V  V N D+P   E +IHR+GRTGR G  G A TL   +
Sbjct: 298 KQEFQYVVATDLAARGLDIQGVSEVINDDIPTDLEFFIHRVGRTGRNGLPGTAITLYGPD 357

Query: 353 DIKHIDAIEKL-IEKKVDWLN----GDLSS-------------LNPPLEKIDIAQHNHAR 394
           +   ++ +EKL I  +   L      D+               L+P L  +   +  H +
Sbjct: 358 EEDKVEELEKLGINFQAKQLKDHQLIDVKDRNRRARRRPSQKQLDPELVGLVKKKKAHVK 417

Query: 395 KNNPIPQKST-GFDRRKKNYSSQKSHIPLKESEKISK 430
                  K    F + K+N  SQ++        K ++
Sbjct: 418 PGYRRQIKGAIRFKQMKENKVSQRTASRAARKAKKNR 454


>gi|327282068|ref|XP_003225766.1| PREDICTED: ATP-dependent RNA helicase DDX25-like [Anolis
           carolinensis]
          Length = 453

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 99/387 (25%), Positives = 178/387 (45%), Gaps = 14/387 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +P++L     ++   +Q+GTGKTA+FVL M
Sbjct: 68  TFEELHLKPELLNGVYAMGFNRPSKIQETALPMILADPPENLIAQSQSGTGKTAAFVLAM 127

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +     + R P+ L + PT ELA Q+    EK G+  +              +   +
Sbjct: 128 LSRVNP---KERFPQCLCVAPTYELALQIGRVVEKMGQFCDNIKVTYAVRGNRLVRGSVV 184

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E    +             +   +      ++ +    M    F      I   +    Q
Sbjct: 185 EEQIVIGTPGSLLDWCFKLKFMDVRKIKVFVLDEADVLMSKQNFSDQSVRIQRALSEDCQ 244

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  + + + ++  + +P  I++     T + I   +        K  AL    +
Sbjct: 245 MLLFSATFEEPVLQFAKRIVPDPNIIKLRREELTLDNIRQYYFQCENIEDKYRALC--NI 302

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC  +KN   L  SL K G  V  + G +   +R  ++ NF++G  +++
Sbjct: 303 YGSITIGQAMIFCQTRKNASWLYWSLTKDGHQVSLLSGELSVENRANVIQNFRDGKDKVL 362

Query: 300 VASDLAARGLDIPDVGHVFNFDVPN------RAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +++++ ARG+D+  V  V NF +P         E Y+HRIGRTGR G+ G AF +V K++
Sbjct: 363 ISTNVCARGIDVKQVTIVVNFSLPTRGLHHADFETYLHRIGRTGRFGKKGIAFNMVEKQN 422

Query: 354 IKHIDAIEKLIEKKVDWL-NGDLSSLN 379
           +  + +I++  +  +  L   D+ +L 
Sbjct: 423 LPLLFSIQEHFKIVIKRLDPEDIEALE 449


>gi|302520727|ref|ZP_07273069.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
 gi|302429622|gb|EFL01438.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
          Length = 518

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 134/440 (30%), Positives = 213/440 (48%), Gaps = 5/440 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL   +V  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP+L  
Sbjct: 83  FAELGLPENIVRKLTQNGVTSPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLAS 142

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G    + PR +IL PTRELA QVAD  + YG   +L + ++ GG     Q   LERG
Sbjct: 143 LAGGFTDKKKPRGIILTPTRELAMQVADALQPYGDVLDLRMKVVCGGTSMSNQIYALERG 202

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+ D  NRG   +  + I ++DEAD+M D+GF+P +  +   VP   Q +L
Sbjct: 203 VDILVATPGRLRDLINRGACSLEKVRIAILDEADQMADLGFMPEVTELLDQVPAGGQRML 262

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ +E+  + + +L +P   EV+       T+ H  +       K            
Sbjct: 263 FSATLENEIDALVKRYLVDPIAHEVDAAQGAVTTMSHHILIV-----KPRDKAPVTAAIA 317

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L   G    A+HG + Q +R ++L++FK+G + ++VA+
Sbjct: 318 SRKGRTIIFVRTQLGADRVAEQLRDAGVKADALHGGMTQGARTRVLADFKDGYVNVLVAT 377

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L      + I  + +
Sbjct: 378 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSLSLPHQRRQIFRLME 437

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPL 422
                        +  +  L +I  A+     +     Q +   +R  ++ + +      
Sbjct: 438 DAGVDAARHQIGSAVFDAELAEITGARSMTEVQAESAGQSAKQAEREVEDLTRELERAKR 497

Query: 423 KESEKISKLQQDIQENDADS 442
           + SE  ++  + +    A +
Sbjct: 498 RASEYRAEADRLVPARRASA 517


>gi|191171034|ref|ZP_03032585.1| ATP-independent RNA helicase DbpA [Escherichia coli F11]
 gi|190908766|gb|EDV68354.1| ATP-independent RNA helicase DbpA [Escherichia coli F11]
          Length = 457

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 133/402 (33%), Positives = 214/402 (53%), Gaps = 12/402 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  LS   +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLSSAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +     +L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---FVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+  ++C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
             +++ K++W  L  + SS+ P   ++     +  +K    P
Sbjct: 357 SDMLQIKLNWQTLPAN-SSIVPLKAEMATLCIDGGKKAKMRP 397


>gi|114647104|ref|XP_001152105.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2 [Pan
           troglodytes]
          Length = 796

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 128/362 (35%), Positives = 194/362 (53%), Gaps = 2/362 (0%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F+LPM   L+  
Sbjct: 13  GLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTH 72

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
            A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L    D++
Sbjct: 73  SAQTGA-RALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPDII 131

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGR++       L + ++E +V DEADR+ +MGF   +Q I + +P   QT+LFSAT
Sbjct: 132 IATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVLFSAT 191

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
           +   L + +   L  P  I ++  +   E ++  F     + +K   LL  L        
Sbjct: 192 LPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSF-FLVREDTKAAVLLHLLRNMVRPQD 250

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             ++F   K +   L   L  Q  S   I+  +D  +R   L+ F  G    ++ +DLAA
Sbjct: 251 QTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLAA 310

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA ++I ++  +   + +
Sbjct: 311 RGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLFLGR 370

Query: 367 KV 368
            +
Sbjct: 371 SL 372


>gi|290890826|ref|ZP_06553893.1| hypothetical protein AWRIB429_1283 [Oenococcus oeni AWRIB429]
 gi|290479598|gb|EFD88255.1| hypothetical protein AWRIB429_1283 [Oenococcus oeni AWRIB429]
          Length = 454

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 140/457 (30%), Positives = 216/457 (47%), Gaps = 34/457 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L  ++V A+    + KPT +Q + IP ++   DV G +QTG+GKT +F+LP+  
Sbjct: 4   QFGQFNLKTEIVKAIDGISFNKPTKVQKRIIPPIIAGRDVVGQSQTGSGKTHAFLLPIFN 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG--------KNYNLTVALLIGGIPFE 113
            L+      +     I  P+RELA Q+   F  +            +L +A  IGG    
Sbjct: 64  GLDPSLEETQAV---ITSPSRELAEQLYQAFRDFQKSLAAIDENFADLRIADYIGGTDRN 120

Query: 114 AQNKK-LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
            Q ++   +   + I TPGR+ D  ++  LL+N     V+DEAD  LDMGF+  +  I S
Sbjct: 121 KQIRQLERKQPQIAIGTPGRLKDFLSKNFLLVNQNRFFVVDEADMALDMGFLEDVDTIAS 180

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +P   Q L+FSAT+ D+L    + +++NP   E+   +  A+TI        A  SK  
Sbjct: 181 AMPDNLQMLVFSATIPDKLTPFLKRYMKNPLIEEIPVSTVVADTI---DNYLLATKSKDK 237

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             +   L ++      ++F N K+ V  L H L+ QG     +HG I+ R R + +   K
Sbjct: 238 NEVIFDLLTRKESYLTLVFANTKERVHELAHFLDSQGLKAAEVHGGIEPRERRRTMKRIK 297

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +   Q +VA+DLAARGLDI  V  V N D+P   E +IHR+GRTGR G  G A TL   +
Sbjct: 298 KQEFQYVVATDLAARGLDIQGVSEVINDDIPTDLEFFIHRVGRTGRNGLPGTAITLYGPD 357

Query: 353 DIKHIDAIEKL-IEKKVDWLN----GDLSS-------------LNPPLEKIDIAQHNHAR 394
           +   ++ +EKL I  +   L      D+               L+P L  +   +  H +
Sbjct: 358 EEDKVEELEKLGINFQAKQLKDHQLIDVKDRNRRARRRPSQKQLDPELVGLVKKKKAHVK 417

Query: 395 KNNPIPQKST-GFDRRKKNYSSQKSHIPLKESEKISK 430
                  K    F + K+N  SQ++        K ++
Sbjct: 418 PGYRRQIKGAIRFKQMKENKVSQRTASRAARKAKKNR 454


>gi|194398476|ref|YP_002037408.1| ATP-dependent RNA helicase [Streptococcus pneumoniae G54]
 gi|194358143|gb|ACF56591.1| ATP-dependent RNA helicase, DEAD/DEAH box helicase [Streptococcus
           pneumoniae G54]
          Length = 447

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 200/452 (44%), Gaps = 43/452 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +      +
Sbjct: 61  QQLDEASDSVQAV---ITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARXIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLEIVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T             
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  +    +
Sbjct: 237 --TQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL-------------------------IEKKVDWLNGDLSSL---------NPPLE 383
             +EKL                          EKK D L+ ++  L             +
Sbjct: 355 RELEKLGIKFSPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKKKKVKPGYKK 414

Query: 384 KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           KI  A     RK      ++ G   RK    +
Sbjct: 415 KIQWAVDEKRRKTKRAENRARGRAERKAKRQT 446


>gi|119945261|ref|YP_942941.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119863865|gb|ABM03342.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 441

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 138/408 (33%), Positives = 223/408 (54%), Gaps = 28/408 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGL   ++  + +  Y +PTPIQ K IP VL   D+   A TG+GKTA+F LP+L 
Sbjct: 17  NFTELGLISPLLSRLTELEYQQPTPIQAKAIPSVLAGRDLIAGANTGSGKTAAFALPLLQ 76

Query: 62  ILEKG----------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGG 109
              +                    LIL PTRELA QVAD+ + Y  ++N  +    + GG
Sbjct: 77  QFGQHLPINKTLSSKNREGNYVAGLILVPTRELAKQVADSIKSYAAHFNGAIKTVAVFGG 136

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +    Q   L  G D+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  
Sbjct: 137 VSANTQMLALRGGTDILVATPGRLLDLISSNAIKLDRVKTLVLDEADRMLSLGFTDELSA 196

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           + +L+P ++Q LLFSAT  +++Q +++  L +P  I++ +  ++        V    + +
Sbjct: 197 LLALLPSSKQILLFSATFPEQVQALTQELLNDPVEIQLQSSDASTLVQRVFTVNKGQKTA 256

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
               L++Q        +  +IF N K +  +L   L K+G S    HG+  Q +R ++L 
Sbjct: 257 LLAHLIKQHQW-----QQALIFVNAKNSCNHLAEKLSKRGISAEVFHGDKGQGARSRVLD 311

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G I +++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G A +L+
Sbjct: 312 AFKAGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLI 371

Query: 350 AKEDIKHIDAIEK-----LIEKKV------DWLNGDLSSLNPPLEKID 386
             +D+ H + IEK     L  ++V      + +N   S+++ P+ K +
Sbjct: 372 DHDDLHHFNVIEKKNKLRLEREQVAGFETAEVMNDGSSAVDKPVAKPE 419


>gi|67522354|ref|XP_659238.1| hypothetical protein AN1634.2 [Aspergillus nidulans FGSC A4]
 gi|40745598|gb|EAA64754.1| hypothetical protein AN1634.2 [Aspergillus nidulans FGSC A4]
          Length = 767

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 121/432 (28%), Positives = 200/432 (46%), Gaps = 38/432 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + GL  +++  V   GY +PTPIQ   IP+ +Q  D+ G+A TG        LP   
Sbjct: 347 SWDESGLPKRLLELVDRVGYKEPTPIQRAAIPIAMQSRDLIGVAVTG------SELP--R 398

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           I E    +   P  ++L PTRELA Q+    +K+ +     V  ++GG  FE Q   L  
Sbjct: 399 IDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEEQAYSLRN 458

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +P T +  
Sbjct: 459 GAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKP 518

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA------------------ 223
                                ++  + T +                              
Sbjct: 519 DTEEAEDSSAMSRHLGSKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVDT 578

Query: 224 ------TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                   A   K+   L ++L S D     I+F N K+N   +   +++ GFS   +HG
Sbjct: 579 VEQRVEMIAGEDKRKKRLGEILSSGDFRPPIIVFVNIKRNCDAIAREIKQWGFSSVTLHG 638

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           +  Q  R   L++ + G+  ++VA+DLA RG+D+PDV  V NF++    E+Y HRIGRTG
Sbjct: 639 SKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVINFNMATSIESYTHRIGRTG 698

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           RAG+ G A T +  ED   +  +++++      +   +S +   L K + AQ    R   
Sbjct: 699 RAGKSGVAITFLGNEDADVMYDLKQML------IKSPISRVPEELRKHEAAQSKPTRGAG 752

Query: 398 PIPQKSTGFDRR 409
              ++++GF  +
Sbjct: 753 KKIEEASGFAGK 764


>gi|323499192|ref|ZP_08104170.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
 gi|323315825|gb|EGA68858.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
          Length = 418

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 137/366 (37%), Positives = 206/366 (56%), Gaps = 10/366 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL P +V  +    Y +PTPIQ  TIP VL   D+ G A TG+GKTA+F LP+L 
Sbjct: 9   TFADLGLIPTLVERLEALEYRQPTPIQSHTIPDVLDGKDIVGGANTGSGKTAAFSLPILQ 68

Query: 62  I---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV--ALLIGGIPFEAQN 116
                E+   R      LIL PTRELA+QVA N + Y  +    +    + GG+    Q 
Sbjct: 69  KILEQEESNRRGNYVSHLILVPTRELASQVAYNVKSYSYHLRDKIKTVAVFGGVSVNPQM 128

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  G+D+++ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  I  L+P 
Sbjct: 129 LALRGGSDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILELLPK 188

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +QTLLFSAT  D++  ++++ L +P  +++ +  ++        V    + +    L++
Sbjct: 189 KKQTLLFSATFPDKVTTLAQHLLNDPVEVQLQSAEASTLVQRVFSVNKGQKTAVLAHLIK 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           Q        +  +IF N K    +L   L K+G +    HG+  Q +R ++L  FK G I
Sbjct: 249 QHKW-----RQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKSGEI 303

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q+++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G   +L+  +D  H
Sbjct: 304 QVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDDFHH 363

Query: 357 IDAIEK 362
              IEK
Sbjct: 364 FKVIEK 369


>gi|261417664|ref|YP_003251346.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC61]
 gi|319767530|ref|YP_004133031.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC52]
 gi|261374121|gb|ACX76864.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC61]
 gi|317112396|gb|ADU94888.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC52]
          Length = 436

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 135/441 (30%), Positives = 216/441 (48%), Gaps = 16/441 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ A+    + KPT IQ + IP  L+   + G +QTGTGKT +++LP++ 
Sbjct: 5   QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIME 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVAD----NFEKYGKNYNLTVALLIGGIPFEAQNK 117
            ++  RA V+     I  PTRELA Q+        +   K+  +    LIGG   +   +
Sbjct: 65  KIKPERAEVQAV---ITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL     ++I TPGRI D      L ++   ILV+DEAD MLDMGFI  +  I + +P  
Sbjct: 122 KLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKD 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+ ++L+   + +++NP  + VN   +  E IEH          ++   L  
Sbjct: 182 LQMLVFSATIPEKLKPFLKKYMENPTFVHVNPKQTANENIEH---VLIPLRGREKTKLLH 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         I+F N +K    +   L +QG  V  +HG++  R R K+++  ++   Q
Sbjct: 239 DVLLSYNPYLAIVFVNTRKMADEVADRLAEQGLKVGVLHGDLTPRERRKMMNLIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N+++P+  + YIHR GRT RAG  G A T+    D   I
Sbjct: 299 YVVATDLAARGIDIEGVSHVINYELPDDLQFYIHRAGRTARAGYSGIAATIYEPSDQDAI 358

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
             +EK+    V  D + G+   L P     +        K++ +        + K+    
Sbjct: 359 ARLEKMGISFVHRDLVRGEWKELPPW----NRRSKRAGEKDDELALLFAKLKKTKQVKPG 414

Query: 416 QKSHIPLKESEKISKLQQDIQ 436
            K  +  +  +K  +L +  +
Sbjct: 415 YKKKLRAELEKKKKRLGRFKK 435


>gi|15242323|ref|NP_196479.1| STRS2 (STRESS RESPONSE SUPPRESSOR 2); ATP-dependent helicase/ RNA
           binding [Arabidopsis thaliana]
 gi|108861886|sp|Q94C75|RH25_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 25
 gi|3776023|emb|CAA09212.1| RNA helicase [Arabidopsis thaliana]
 gi|9759356|dbj|BAB10011.1| RNA helicase [Arabidopsis thaliana]
 gi|23297113|gb|AAN13096.1| RNA helicase [Arabidopsis thaliana]
 gi|332003947|gb|AED91330.1| DEAD-box ATP-dependent RNA helicase 25 [Arabidopsis thaliana]
          Length = 563

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 125/476 (26%), Positives = 205/476 (43%), Gaps = 31/476 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F    LSP  +  + DAG+   T +Q  T+PL+LQ  D+   A+TGTGKT +F+LP    
Sbjct: 82  FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141

Query: 59  -MLTILEKGRARVRMPRTLILEPTRE--LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +         R      L++ PTRE    A    N             ++ G      Q
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQ 201

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIE---ILVIDEADRMLDMGFIPYIQNITS 172
            +  +    +L+ TPGR+ DH +        +    +LV+DEAD +LDMGF   I+ I +
Sbjct: 202 RRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIA 261

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY----AQY 228
            VP  RQT LFSAT++DE++++    L+              ET +            ++
Sbjct: 262 AVPKQRQTFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQMYMIASLDRH 321

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
                 L +   + +     IIFC        +   L K   +V  IH    Q  R ++ 
Sbjct: 322 FSLLYGLLKKHITDNVGYKVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVS 381

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             F++    ++V SD++ARG+D PDV  V    +P+  E YIHR+GRTGR G+ G+   L
Sbjct: 382 DEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLL 441

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           +A  +   + +++         L    SSL PP++   + +         +  K   +  
Sbjct: 442 LAPWEEYFLSSVKD--------LPITKSSL-PPIDHEAVKKVQKGLIQVEMTNKEAAYQA 492

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
               Y SQK     +++ ++ +L  +   +         ++P  +     GK+  K
Sbjct: 493 WLGYYKSQKKI--ARDTTRLVELANEFSRS------MGLSIPPAIPVNILGKMGLK 540


>gi|297797363|ref|XP_002866566.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297312401|gb|EFH42825.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 721

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 126/476 (26%), Positives = 210/476 (44%), Gaps = 31/476 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F    LSP  + A+ DAGY   T +Q  T+P++L+  DV   A+TGTGKT +F+LP    
Sbjct: 255 FDQYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEV 314

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF--EAQ 115
            + +       +      L++ PTRELA Q A       K +      ++ G       Q
Sbjct: 315 VVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQ 374

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNN---IEILVIDEADRMLDMGFIPYIQNITS 172
            +       +L+ TPGR+ DH             +++LV+DEAD +LDMGF   I+ I S
Sbjct: 375 KRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIIS 434

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY----AQY 228
            VP  RQT LFSAT+ +E++++    L+            T ET +            ++
Sbjct: 435 AVPKERQTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRH 494

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
                 L +     +     I+FC        +   L +   +V  IH    Q  R ++ 
Sbjct: 495 FSLLYTLLREHIMDNVDYKVIVFCTTAMVTKLVADLLGEINLNVREIHSRKPQSYRTRVS 554

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           + F++    ++V SD++ARG+D PDV  V    +P   E YIHR+GRTGR G+ G+   L
Sbjct: 555 NEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILL 614

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           +A  +   + ++     K +      L S++P      + +   A  +  +  K   +  
Sbjct: 615 LAPWEECFLSSL-----KDLPITKSPLPSIDPE----TVKKVQKALCHVEMRNKEAAYQA 665

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
               Y+SQK  +  ++ +++ +L  +   +         + P  +     GK+  K
Sbjct: 666 WLGYYNSQK--MIGRDKDRLVELANEFSRS------MGLDNPPAIPKLILGKMGLK 713


>gi|307105200|gb|EFN53450.1| hypothetical protein CHLNCDRAFT_36420 [Chlorella variabilis]
          Length = 421

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 138/404 (34%), Positives = 207/404 (51%), Gaps = 8/404 (1%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE-- 64
           GLS   + A     +  P+PIQ + +PL L   D+ GIA TG+GKT +F LP L  +   
Sbjct: 11  GLSAAELHA--TRSFQHPSPIQAQCLPLALSGRDLVGIAATGSGKTLAFGLPALRHIRAQ 68

Query: 65  --KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
              G A  + P  L++ PTRELA Q+    E+ G    ++   + GG+P   Q   L +G
Sbjct: 69  SEAGVATGKKPVALVIAPTRELALQICAVLEEAGSQCGISTVCVYGGVPKREQVAALRKG 128

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A +++ TPGR+ D    G   ++ +  LV+DEADRMLD+GF P+I+ I       RQTL+
Sbjct: 129 AAIVVATPGRLEDLLEDGACRLDEVSYLVLDEADRMLDLGFEPHIRAIAGKTRADRQTLM 188

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK-CALLQQLLQS 241
           FSAT    ++K++  FL +P R+ + +    A       +      ++            
Sbjct: 189 FSATWPPAIRKLASEFLCHPVRVTIGSQDLAASHSVTQVIEVIEDRARDGRLHELLQRYH 248

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIF   KK  V +   L+++G+   AIHG+I Q  R   +  FK G + L+VA
Sbjct: 249 ASRSNRVIIFVLYKKEAVRVEQLLQRKGWKAAAIHGDISQVQRSSAVEQFKSGAVPLLVA 308

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT-LVAKEDIKHIDAI 360
           +D+AARGLDIPDV  V N+  P   E+Y+HRIGRTGRAG+ GKA T  V   D      +
Sbjct: 309 TDVAARGLDIPDVEAVLNYSFPLTTEDYVHRIGRTGRAGKTGKAHTFFVGNNDKPRAGEL 368

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
             ++ +    +  +L      ++K +   +    K+    QK+T
Sbjct: 369 INVLREAKQTVPEELLKFGTTVKKKESKLYGAHFKDVDHSQKAT 412


>gi|300854098|ref|YP_003779082.1| putative ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300434213|gb|ADK13980.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 382

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 112/370 (30%), Positives = 189/370 (51%), Gaps = 9/370 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LG++ ++   +   G      IQ K IP  L   DV G ++TG+GKT ++++P+   
Sbjct: 6   FNELGINEEITEGLKKEGIEYAAEIQYKAIPEALLGKDVVGESETGSGKTLAYIVPIFQK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN---LTVALLIGGIPFEAQNKKL 119
           ++     V+     IL PT ELA Q+ +  +    N +    + A++             
Sbjct: 66  IDFESKDVQA---YILAPTHELAIQIHNVIKNLACNSDIPVRSAAIIGNVNIKRQVEILK 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +++ + GRIL      KL  +N++I+V+DEAD++LD   I  ++ I       RQ
Sbjct: 123 NEKPHIVVGSTGRILQLIKMKKLKSHNVKIIVVDEADKLLDKNNINDVKAIIKTTLKERQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSAT+ D    ++ + +++ K I+    +S  E I+H     +    +   L+ + L
Sbjct: 183 LMFFSATIDDRTLDIARDLMKDYKFIKAEQKTSMNENIKH---MCFMCERRDKILILRKL 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 K  I+F N+   +  L   L+       AI+G  D++ R + L +FK G I L+
Sbjct: 240 VHILNPKRAIVFVNKPDEIEILTEKLKYHKLRAQAIYGAEDKKVRKRALESFKLGKINLL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLDI DV +VF++D+P   +NY+HR GRT RAG+ G +  ++  ++ K +  
Sbjct: 300 VASDIAARGLDIDDVDYVFSYDIPEDPDNYLHRSGRTARAGKEGTSICIITNKEQKLLKQ 359

Query: 360 IEKLIEKKVD 369
            EK    K+D
Sbjct: 360 YEKSFNIKID 369


>gi|295702531|ref|YP_003595606.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294800190|gb|ADF37256.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
          Length = 401

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 99/358 (27%), Positives = 182/358 (50%), Gaps = 7/358 (1%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P +  A   AG+ +PT IQ K I  +L   DV G + TGTGKT +++LP+L  ++ G 
Sbjct: 8   LQPFLQEAWKKAGFNEPTAIQTKAISEILANKDVIGESPTGTGKTLAYLLPVLHRIQPG- 66

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
                 + +IL  + EL  Q+    + + +   ++ A  IGG   + Q +KL++  ++++
Sbjct: 67  --PSHIQAVILASSHELVMQIHGEIQTWSQGSGISSAAFIGGANMKRQLEKLKKRPNIIV 124

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGR+ +     KL M+ ++ +VIDEAD++     +  +Q I  +    RQ L+FSAT+
Sbjct: 125 GTPGRLNELIKMKKLKMHEVKTIVIDEADQLFVPEHVQTVQQIVKMALSDRQILVFSATV 184

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
           ++  + ++++ + +P  IEV       E         Y +   +  +       +     
Sbjct: 185 SERTKSLAKDMMNHPLEIEVGR----DELPASKVEHVYIKSEARDKVDVLRKLVRQEQMK 240

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            + F      ++     L  +     ++H    +  R   +  F++G   +++A+D+AAR
Sbjct: 241 ALAFFKGIDTLIEFEEKLTFKRVEAGSLHSETKKEDRATTIKGFRKGDFPVLLATDVAAR 300

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           GLDI  + HV + DVP  A+ Y+HR GRTGR+G  G   +LV + + +++  I + ++
Sbjct: 301 GLDIKGLTHVIHIDVPQDADQYVHRSGRTGRSGAEGTVISLVTEREERNLKQIARELQ 358


>gi|260220807|emb|CBA28741.1| hypothetical protein Csp_A08660 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 652

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 131/450 (29%), Positives = 210/450 (46%), Gaps = 52/450 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH---------DVCGIAQTGTGKTA 53
           F +LGL+P +V A  D GY +PT +Q K IPL +            D+   +QTG+GKTA
Sbjct: 60  FVELGLAPALVQACKDLGYTQPTTVQQKAIPLAMAGVGSEKAGKFVDLMVSSQTGSGKTA 119

Query: 54  SFVLPMLT---------------------------------------ILEKGRARVRMPR 74
           +F+LP+L                                               +   P 
Sbjct: 120 AFLLPVLHTLLTQQAEAEEAERAEYEQACADAAAKGEPAPKRAKRKDPTNPRNFKAPTPG 179

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            LI+ PTRELA QVA +     ++        I G           + A++++ TPGR+L
Sbjct: 180 ALIVCPTRELAQQVAHDAIDLVQHCRGLRVANIVGGMPYQLQIAKLQNANLVVATPGRLL 239

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D     ++ ++ ++ LV+DEADRMLD+GF   +  I  L    +QT++FSAT    +Q++
Sbjct: 240 DLQRSMQIKLDQVQFLVVDEADRMLDLGFADDLAEINQLTIDRKQTMMFSATFAPRIQQL 299

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           +   ++ P+R+ +++P      I+           K+            T+   ++F + 
Sbjct: 300 AARVMREPQRVTIDSPQEKHANIKQVLFWADNAQHKRKL--LDHWLRDTTINQAVVFAST 357

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           +     L + L++ GFS  A+HG + Q  R + L   ++G +Q++VA+D+AARG+D+P +
Sbjct: 358 QIECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVAARGIDVPTI 417

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV--DWLN 372
            HVFNF +P +AE+Y HRIGRTGRAGR G A T     D + I  IE    + +  + + 
Sbjct: 418 THVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIEAYSRQPIKPETIP 477

Query: 373 GDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           G       P  +             P  +K
Sbjct: 478 GLEPQQRAPESRPSFGGRGRGGDFQPRERK 507


>gi|189189808|ref|XP_001931243.1| ATP-dependent RNA helicase DBP10 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187972849|gb|EDU40348.1| ATP-dependent RNA helicase DBP10 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 892

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 129/401 (32%), Positives = 217/401 (54%), Gaps = 36/401 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ K +PL+LQ  DV G+A+TG+GKTA+FV+PM+  
Sbjct: 79  FQAMGLNAALLKAIAQKGFKIPTPIQRKAVPLMLQGEDVVGMARTGSGKTAAFVIPMIQK 138

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+V   R +I+ P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 139 LKAHSAKVGA-RGIIMSPSRELALQTLKVVKELGRGTDLRTILLVGGDSLEEQFSSMTTN 197

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L ++++  +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 198 PDIIIATPGRFLHLKVEMGLDLSSVRYIVFDEADRLFEMGFAAQLSEILHALPASRQTLL 257

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA---------------- 226
           FSAT+   L + +   LQ PK I ++  S  +  ++  +    +                
Sbjct: 258 FSATLPKSLVEFARAGLQEPKLIRLDAESKISPDLKSAYFTIKSGDRDGALLHLLDNVIK 317

Query: 227 -------------------QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
                                SKK    +  ++     ++ IIF   K  V  L + L  
Sbjct: 318 VPVGETDASKKAKEDAEKASNSKKRKRSEGFVKDVPVAESTIIFAATKHRVEYLSNLLRN 377

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            G++V  ++GN+DQ +R + + +F+ G  +++V +D+AARG+D+P + HV N+D P++ +
Sbjct: 378 AGYAVSYVYGNLDQTARKEQIQDFRTGLTRILVVTDVAARGVDMPHINHVINYDFPSQPK 437

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            ++HR+GRT RAGR G A++L    D+ ++  ++  + K++
Sbjct: 438 IFVHRVGRTARAGRKGWAYSLCRHVDLPYLIDLQLFLGKRL 478


>gi|70663482|emb|CAJ15140.1| PL10a protein [Platynereis dumerilii]
          Length = 771

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 142/421 (33%), Positives = 218/421 (51%), Gaps = 26/421 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L L   V   ++ + Y KPTP+Q   +P++ ++ D+   AQTG+GKTASF++P+L+
Sbjct: 290 SFAELELGEIVDSNIVLSKYTKPTPVQKHAMPIIKKKRDLMACAQTGSGKTASFLVPVLS 349

Query: 62  ILE------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            +                 R + P  L+L PTRELA+Q+ +   K+    ++   ++ GG
Sbjct: 350 QMFLDGQPEFIREQNNRNNRKQYPIALVLAPTRELASQIYEEARKFAYRSHVRPCVVYGG 409

Query: 110 IPFEAQNKK-LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
               AQ +   ERG  +L+ TPGR++D   RGK+ +++I  +V+DEADRMLDMGF P I+
Sbjct: 410 ADIGAQMRDLPERGCHLLVATPGRLVDMLERGKIGLDHIRFVVLDEADRMLDMGFEPQIR 469

Query: 169 N----ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
                 T      R+TL+FSAT   E+Q ++ +FL N   + V    ST+E I    V  
Sbjct: 470 RIVEKDTMPPTGDRRTLMFSATFPKEIQILARDFLHNYIFLAVGRVGSTSENITQKVVWV 529

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                +   L        D++   ++F   KK    L + L  +G+    IHG+  Q+ R
Sbjct: 530 EEPDKRSFLLDLLNASGPDSL--TLVFVETKKGADALDNFLYNEGYPSACIHGDRSQKER 587

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + L NF+ G   ++VA+ +AARGLDIP+V HV NFD+P+  E Y+HRIGRTGR G  G 
Sbjct: 588 EEALRNFRSGKTPVLVATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL 647

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           A +    ++   +  +       VD L      + P +E I            P  ++  
Sbjct: 648 ATSFFNDKNKNIVRDM-------VDLLIEAKQEVPPWIESIAYEARTMGGGRRPQNKRFG 700

Query: 405 G 405
           G
Sbjct: 701 G 701


>gi|328945053|gb|EGG39209.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK1087]
          Length = 447

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 129/451 (28%), Positives = 203/451 (45%), Gaps = 12/451 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-- 118
            +L++    V+     I  P+RELAAQ+     +        + +       +   +   
Sbjct: 61  QMLDEEADSVQAV---ITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQIGK 117

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTI---ENWLLSTKGRDKNAQIY 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             +EK+  K +  +  D        ++   A    +R+            ++KK     K
Sbjct: 355 RELEKMGIKFIPKMIKD-DEFQDTYDRDRRANREKSREKLDTEMLGLVKKKKKKIKPGYK 413

Query: 418 SHIPL--KESEKISKLQQDIQENDADSLGFR 446
             I     E  + +K  ++     A+    R
Sbjct: 414 KKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|255563905|ref|XP_002522952.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223537764|gb|EEF39382.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 753

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 124/451 (27%), Positives = 214/451 (47%), Gaps = 17/451 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS +    +  AGY+  T IQ  ++P  L   D+ G A+TG+GKT +FV+P+L 
Sbjct: 66  KFKELPLSKRTKDGLTKAGYITMTEIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLE 125

Query: 62  ILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L + R   +    ++I+ PTRELA Q+ D     GK +N +  LLIGG       K+  
Sbjct: 126 KLHRERWGPQDGVGSIIISPTRELAGQLFDVLRNVGKFHNFSAGLLIGGRKDIDTEKESV 185

Query: 121 RGADVLICTPGRILDHFNRGKLLMN-NIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              ++L+CTPGR+L H +         +++LV+DEADR+LD+GF   +  I S +P  RQ
Sbjct: 186 NELNILVCTPGRLLQHMDETPNFDCSQLQVLVLDEADRILDVGFKKTLNAIISQIPKYRQ 245

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT T  +Q ++   L++P+ + V+  S TA        A      +K   +    
Sbjct: 246 TLLFSATQTKSVQDLARLSLKDPEYVGVHEKSDTATPNRLQQTAMVVPLEQKL-DMLWSF 304

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  N ++F +  K V  +  + +K    +     +   +   +++   +    + +
Sbjct: 305 IKAHLNSNILVFLSSCKQVKFVYEAFKKLHPGIPLKCLHGRMKQGKRMVIYSQFCEQRSV 364

Query: 300 VASDLAARGLDIPDV--GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           + S   A      +     V   D P    +YIHR+GRT R    G++   +   ++K +
Sbjct: 365 LFSTDVAARGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYQSGGRSVLFLLPSEMKML 424

Query: 358 DAIE------KLIE---KKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNNPIPQKSTG 405
           + ++      + I+   K++  ++G LS+L   N  L+K+ I       ++  I +    
Sbjct: 425 EKLQEAKVPIQFIKANAKRLQPVSGLLSALLVKNEDLQKLAIRAFITYLRSIYIQKDKEV 484

Query: 406 FDRRKKNYSSQKSHIPLKESEKISKLQQDIQ 436
           FD  K +     + + L  + KI  L Q ++
Sbjct: 485 FDVMKLSIDEYSASLGLPMTPKIRFLNQKMK 515


>gi|6635383|gb|AAF19805.1| EIF4A protein [Brassica oleracea]
          Length = 354

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 119/358 (33%), Positives = 186/358 (51%), Gaps = 5/358 (1%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80
           + KP+ IQ + I    +  DV   AQ+GTGKTA+F      +L++    +   + L+L P
Sbjct: 1   FEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFC---SGVLQQLDYTLVQCQALVLAP 57

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TRELA Q+       G    + V   +GG       + L+ G  V++ TPGR+ D   R 
Sbjct: 58  TRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQ 117

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200
            L  + I++ V+DEAD ML  GF   I +I  L+P   Q  +FSATM  E  +++  F+ 
Sbjct: 118 SLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMN 177

Query: 201 NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVN 260
            P RI V     T E I+  +V    +  K   L          +   +IF N ++ V  
Sbjct: 178 KPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL--YETLAITQSVIFVNTRRKVDW 235

Query: 261 LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNF 320
           L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ +DL ARG+D+  V  V NF
Sbjct: 236 LTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINF 295

Query: 321 DVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           D+P + ENY+HRIGR+GR GR G A   +  +D + +  I+K     V+ L  +++ L
Sbjct: 296 DLPTQPENYLHRIGRSGRFGRKGVAINFMTTDDERMLSDIQKFYNVVVEELPSNVADL 353


>gi|149010613|ref|ZP_01831984.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|303255825|ref|ZP_07341866.1| putative helicase [Streptococcus pneumoniae BS455]
 gi|303266290|ref|ZP_07352181.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae BS457]
 gi|147765094|gb|EDK72023.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|301801607|emb|CBW34305.1| putative helicase [Streptococcus pneumoniae INV200]
 gi|302597209|gb|EFL64314.1| putative helicase [Streptococcus pneumoniae BS455]
 gi|302644220|gb|EFL74476.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae BS457]
          Length = 447

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 201/452 (44%), Gaps = 43/452 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +   +  +
Sbjct: 61  QQLDEASDSVQAV---ITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T             
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  +    +
Sbjct: 237 --TQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL-------------------------IEKKVDWLNGDLSSL---------NPPLE 383
             +EKL                          EKK D L+ ++  L             +
Sbjct: 355 RELEKLGIKFSPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKKKKVKPGYKK 414

Query: 384 KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           KI  A     RK      ++ G   RK    +
Sbjct: 415 KIQWAVDEKRRKTKRAENRARGRAERKAKRQT 446


>gi|242051801|ref|XP_002455046.1| hypothetical protein SORBIDRAFT_03g003520 [Sorghum bicolor]
 gi|241927021|gb|EES00166.1| hypothetical protein SORBIDRAFT_03g003520 [Sorghum bicolor]
          Length = 612

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 133/486 (27%), Positives = 205/486 (42%), Gaps = 30/486 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL  +V+ A+ + G  KPT IQ   +P VL    V   + TG+GKT +++LP++ 
Sbjct: 95  SFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQ 154

Query: 62  ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +     + R PR ++L PTREL  QV    +    +      ++ GG     Q
Sbjct: 155 LLRRDEAMLGISMKPRRPRAVVLCPTRELTEQVYRVAKSISHHARFRSTMVSGGTRLRPQ 214

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---- 171
              L    D+++ TPGRILDH   G ++  +I+ LV+DEAD M D GF P I+       
Sbjct: 215 EDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLK 274

Query: 172 ----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
                      QT+L +ATMT  +QK+ +   +    +  ++      T  H F+     
Sbjct: 275 NRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTSSFQKRVSTARHDFIKLSGA 334

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
            +K  ALLQ L  S       ++FCN   +   + H L +   S    HG +    R++ 
Sbjct: 335 ENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVEN 394

Query: 288 LSNFKEGTIQLMVASDLAARGLDIP-DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
           L+ F+                  +  DV HV  FD P+ + +Y+HR GRT R G  GK  
Sbjct: 395 LNKFRNEEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVT 454

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG- 405
           ++VAK+D+     IE+ ++K     N  L +L     +   +  + + K  P     T  
Sbjct: 455 SIVAKKDVALATRIEEAMKK-----NESLEALTTNNVRRAASPQSVSTKGRPSRLVKTSN 509

Query: 406 -------FDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
                    RR    SS+ S  P   +    +     Q     S   R   P  + P   
Sbjct: 510 ALKVVNQKGRRGVALSSKSSRTPKDTTSTRRRSPLKSQAKTTKSAAPRKAKP--LKPSQS 567

Query: 459 GKLNDK 464
                K
Sbjct: 568 STKASK 573


>gi|240281151|gb|EER44654.1| ATP-dependent RNA helicase eIF4A [Ajellomyces capsulatus H143]
 gi|325092352|gb|EGC45662.1| RNA helicase [Ajellomyces capsulatus H88]
          Length = 398

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 208/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L  +++  V   G+ +P+ IQ + I  V++  DV   AQ+GTGKTA+F +  L 
Sbjct: 26  SFDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++  + LIL PTRELA Q+       G   ++     IGGI      K L+ 
Sbjct: 86  KVDTN---LKACQALILAPTRELAQQIQKVVVAIGDFMSIECHACIGGISVREDMKALQD 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I   +P + Q +
Sbjct: 143 GPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSHGFTEQIYDIFQFLPQSTQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 203 LLSATMPQDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG+++Q+ R  I+  F+ G+ ++++A
Sbjct: 261 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQQQRDVIMKEFRSGSSRVLIA 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 321 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 381 QFYSTQIEEMPMNVADL 397


>gi|148985890|ref|ZP_01818984.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|169832682|ref|YP_001694222.1| ATP-dependent RNA helicase [Streptococcus pneumoniae Hungary19A-6]
 gi|147922036|gb|EDK73160.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|168995184|gb|ACA35796.1| ATP-dependent RNA helicase [Streptococcus pneumoniae Hungary19A-6]
 gi|301799777|emb|CBW32346.1| putative helicase [Streptococcus pneumoniae OXC141]
          Length = 447

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 201/452 (44%), Gaps = 43/452 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +   +  +
Sbjct: 61  QQLDEASDSVQAV---ITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T             
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  +    +
Sbjct: 237 --TQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL-------------------------IEKKVDWLNGDLSSL---------NPPLE 383
             +EKL                          EKK D L+ ++  L             +
Sbjct: 355 RELEKLGIKFSPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKKKKVKPGYKK 414

Query: 384 KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           KI  A     RK      ++ G   RK    +
Sbjct: 415 KIQWAVDEKRRKTKRAENRARGRAERKAKRQT 446


>gi|485388|dbj|BAA06336.1| eukaryotic initiation factor 4AII [Homo sapiens]
          Length = 407

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 195/378 (51%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L   ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 34  NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF-EAQNKKLE 120
            LE      +    L+L PTRELA Q+       G     T    IGG        K   
Sbjct: 94  QLEIEFKETQA---LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQA 150

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I  I   +  + Q 
Sbjct: 151 EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQV 210

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +  SATM  ++ +V++ F+++P RI V     T E I+  ++    +  K   L      
Sbjct: 211 VFASATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDL--Y 268

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 269 ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLI 328

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V +ED + +  I
Sbjct: 329 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI 388

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      V+ +  +++ L
Sbjct: 389 ETFYNTTVEEMPMNVADL 406


>gi|332358037|gb|EGJ35870.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK1056]
          Length = 447

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 129/451 (28%), Positives = 203/451 (45%), Gaps = 12/451 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-- 118
            +L++    V+     I  P+RELAAQ+     +        + +       +   +   
Sbjct: 61  QMLDEEADSVQAV---ITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQIGK 117

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTI---ENWLLSTKGRDKNAQIY 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             +EK+  K +  +  D        ++   A    +R+            ++KK     K
Sbjct: 355 RELEKMGIKFIPKMIKD-DEFQDTYDRDRRANREKSREKLDTEMLGLVKKKKKKIKPGYK 413

Query: 418 SHIPL--KESEKISKLQQDIQENDADSLGFR 446
             I     E  + +K  ++     A+    R
Sbjct: 414 KKIQWVVNEKRRKTKRAENRARGRAERKAKR 444


>gi|332010396|gb|AED97779.1| DEAD-box ATP-dependent RNA helicase 31 [Arabidopsis thaliana]
          Length = 788

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 126/476 (26%), Positives = 210/476 (44%), Gaps = 31/476 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F    LSP  + A+ DAGY   T +Q  T+P++L+  DV   A+TGTGKT +F+LP    
Sbjct: 322 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEV 381

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF--EAQ 115
            + +       +      L++ PTRELA Q A       K +      ++ G       Q
Sbjct: 382 VVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQ 441

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNN---IEILVIDEADRMLDMGFIPYIQNITS 172
            +       +L+ TPGR+ DH             +++LV+DEAD +LDMGF   I+ I S
Sbjct: 442 KRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIIS 501

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY----AQY 228
            VP  RQT LFSAT+ +E++++    L+            T ET +            ++
Sbjct: 502 AVPKERQTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRH 561

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
                 L +     +     I+FC        +   L +   +V  IH    Q  R ++ 
Sbjct: 562 FSLLYTLLREHIMGNVDYKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVS 621

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           + F++    ++V SD++ARG+D PDV  V    +P   E YIHR+GRTGR G+ G+   L
Sbjct: 622 NEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILL 681

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           +A  +   + ++     K +      L S++P      + +   A  +  +  K   +  
Sbjct: 682 LAPWEEYFLSSL-----KDLPITKSPLPSIDPE----TVKKVQKALCHVEMRNKEAAYQA 732

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
               Y+SQK  +  ++ +++ +L  +   +         + P  +     GK+  K
Sbjct: 733 WLGYYNSQK--MIGRDKDRLVELANEFSRS------MGLDNPPAIPKLILGKMGLK 780


>gi|109893656|sp|Q9FFQ1|RH31_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 31
          Length = 716

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 126/476 (26%), Positives = 210/476 (44%), Gaps = 31/476 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F    LSP  + A+ DAGY   T +Q  T+P++L+  DV   A+TGTGKT +F+LP    
Sbjct: 250 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEV 309

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF--EAQ 115
            + +       +      L++ PTRELA Q A       K +      ++ G       Q
Sbjct: 310 VVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQ 369

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNN---IEILVIDEADRMLDMGFIPYIQNITS 172
            +       +L+ TPGR+ DH             +++LV+DEAD +LDMGF   I+ I S
Sbjct: 370 KRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIIS 429

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY----AQY 228
            VP  RQT LFSAT+ +E++++    L+            T ET +            ++
Sbjct: 430 AVPKERQTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRH 489

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
                 L +     +     I+FC        +   L +   +V  IH    Q  R ++ 
Sbjct: 490 FSLLYTLLREHIMGNVDYKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVS 549

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           + F++    ++V SD++ARG+D PDV  V    +P   E YIHR+GRTGR G+ G+   L
Sbjct: 550 NEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILL 609

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           +A  +   + ++     K +      L S++P      + +   A  +  +  K   +  
Sbjct: 610 LAPWEEYFLSSL-----KDLPITKSPLPSIDPE----TVKKVQKALCHVEMRNKEAAYQA 660

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
               Y+SQK  +  ++ +++ +L  +   +         + P  +     GK+  K
Sbjct: 661 WLGYYNSQK--MIGRDKDRLVELANEFSRS------MGLDNPPAIPKLILGKMGLK 708


>gi|15242854|ref|NP_201168.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|10177044|dbj|BAB10456.1| RNA helicase [Arabidopsis thaliana]
          Length = 522

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 126/476 (26%), Positives = 210/476 (44%), Gaps = 31/476 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F    LSP  + A+ DAGY   T +Q  T+P++L+  DV   A+TGTGKT +F+LP    
Sbjct: 56  FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEV 115

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF--EAQ 115
            + +       +      L++ PTRELA Q A       K +      ++ G       Q
Sbjct: 116 VVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQ 175

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNN---IEILVIDEADRMLDMGFIPYIQNITS 172
            +       +L+ TPGR+ DH             +++LV+DEAD +LDMGF   I+ I S
Sbjct: 176 KRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIIS 235

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY----AQY 228
            VP  RQT LFSAT+ +E++++    L+            T ET +            ++
Sbjct: 236 AVPKERQTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRH 295

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
                 L +     +     I+FC        +   L +   +V  IH    Q  R ++ 
Sbjct: 296 FSLLYTLLREHIMGNVDYKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVS 355

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           + F++    ++V SD++ARG+D PDV  V    +P   E YIHR+GRTGR G+ G+   L
Sbjct: 356 NEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILL 415

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           +A  +   + ++     K +      L S++P      + +   A  +  +  K   +  
Sbjct: 416 LAPWEEYFLSSL-----KDLPITKSPLPSIDPE----TVKKVQKALCHVEMRNKEAAYQA 466

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
               Y+SQK  +  ++ +++ +L  +   +         + P  +     GK+  K
Sbjct: 467 WLGYYNSQK--MIGRDKDRLVELANEFSRS------MGLDNPPAIPKLILGKMGLK 514


>gi|330923439|ref|XP_003300242.1| hypothetical protein PTT_11425 [Pyrenophora teres f. teres 0-1]
 gi|311325733|gb|EFQ91667.1| hypothetical protein PTT_11425 [Pyrenophora teres f. teres 0-1]
          Length = 606

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 109/388 (28%), Positives = 170/388 (43%), Gaps = 25/388 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D GL P ++  V    Y  PTPIQ   IP VL  HDV  IAQTG+GKTA+F++P+L+
Sbjct: 120 NFEDAGLHPIMLENVKLCQYTYPTPIQSYCIPAVLTGHDVVAIAQTGSGKTAAFLIPILS 179

Query: 62  ILEKGRARVRMPRTL------------------ILEPTRELAAQVADNFEKYGKNYNLTV 103
            L     ++  PR                    ++ PTRELA Q  D   +      L  
Sbjct: 180 KLMGKARQLAAPRPNPVRYNPLTDKVRAEPLVLVVCPTRELACQTFDEARRLCYRTMLRP 239

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMG 162
            ++ GG P + Q ++LE G D+LI TPGR++D       L    ++  +IDEAD +L  G
Sbjct: 240 CVIYGGAPTKNQREQLEMGCDILIATPGRLMDFAQNANLLSFRRLKFTIIDEADELLSGG 299

Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHC 220
           +   ++ I                 +    K +    +     +           T E+ 
Sbjct: 300 WEDVMEKIFQGGDTNTDADHTYLMFSATFPKEARRLAKEYMADDFTRIKVGRVGSTHENI 359

Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
                             L   +  +  ++F N K     +   L  +   V +IH +  
Sbjct: 360 KQQIIWVEESAKNQALFDLIFSEGPQRTLVFTNSKAKCDMVDDFLYNKALPVTSIHSDRT 419

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN----YIHRIGRT 336
           QR R   L +F+     ++VA+ + ARGLD+ ++ HV N+D+P+   +    YIHRIGRT
Sbjct: 420 QREREDALRSFRTARCPILVATGVTARGLDVANIKHVINYDLPSTMHDGITEYIHRIGRT 479

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLI 364
            R G  GKA +     +    + + K++
Sbjct: 480 ARIGNEGKATSFFNDRNEDIGEDLTKIL 507


>gi|255944863|ref|XP_002563199.1| Pc20g06740 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587934|emb|CAP86003.1| Pc20g06740 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 396

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 128/377 (33%), Positives = 204/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P+++  V   G+ +P+ IQ + I  +++ +DV   AQ+GTGKTA+F +  L 
Sbjct: 24  SFDSMDLKPELLRGVYAYGFERPSAIQQRAIMPIIKGNDVIAQAQSGTGKTATFSISALQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+  + LIL PTRELA Q+       G   +L     IGG         L  
Sbjct: 84  KIDP---EVKACQALILAPTRELAQQIQKVVVAIGDFMSLDCHACIGGTNVREDMNALRA 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L    +++ ++DEAD ML  GF   I +I  L+P + Q  
Sbjct: 141 GPQVVVGTPGRVHDMIQRRVLSTTAMKLFILDEADEMLSRGFTEQIYDIFQLLPQSTQVT 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 201 LLSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A
Sbjct: 259 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQGQRDVIMKEFRSGSSRVLIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMLREIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +V+ +  +++ L
Sbjct: 379 QFYSTQVEEMPMNVADL 395


>gi|323350323|ref|ZP_08085988.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis VMC66]
 gi|322123508|gb|EFX95179.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis VMC66]
          Length = 447

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 129/451 (28%), Positives = 203/451 (45%), Gaps = 12/451 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-- 118
            +L++    V+     I  P+RELAAQ+     +        + +       +   +   
Sbjct: 61  QMLDEEADTVQAV---ITAPSRELAAQIYQAARQLASFSEKEIRVANYIGGTDKARQIGK 117

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTI---ENWLLSTKGRDKNAQIY 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             +EK+  K +  +  D        ++   A    +R+            ++KK     K
Sbjct: 355 RELEKMGIKFIPKMIKD-DEFQDTYDRDRRANREKSREKLDTEMLGLVKKKKKKIKPGYK 413

Query: 418 SHIPL--KESEKISKLQQDIQENDADSLGFR 446
             I     E  + +K  ++     A+    R
Sbjct: 414 KKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|256018403|ref|ZP_05432268.1| ATP-dependent RNA helicase DbpA [Shigella sp. D9]
 gi|332279457|ref|ZP_08391870.1| ATP-dependent RNA helicase DbpA [Shigella sp. D9]
 gi|332101809|gb|EGJ05155.1| ATP-dependent RNA helicase DbpA [Shigella sp. D9]
          Length = 457

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 208/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q+  +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQVAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAV----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W     +S   PLE
Sbjct: 357 SDMLQIKLNWQTPPANSSILPLE 379


>gi|48146543|emb|CAG33494.1| DDX56 [Homo sapiens]
          Length = 547

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 120/493 (24%), Positives = 205/493 (41%), Gaps = 41/493 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F  +GL P+++ AV D G+ + T IQ K IPL L+  D+   A+TG+GKTA++ +PM   
Sbjct: 9   FEHMGLDPRLLQAVTDLGWSRSTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQ 115
            L     G    +  R L+L PT+ELA Q     ++        V +            +
Sbjct: 69  LLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQR 128

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              +E+   V+      +         L +++E+LV+DEAD +   GF   ++++   +P
Sbjct: 129 AVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q  L SAT  +++Q + E  L NP  +++             F         K  LL
Sbjct: 189 RIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLL 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             LL+        ++F N  +    L   LE+     C ++G +  RSR  I+S F +G 
Sbjct: 249 YALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGF 308

Query: 296 IQL---------------------------MVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
                                                ARG+D   V  V NFD+P   E 
Sbjct: 309 YDCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEA 368

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           YIHR GRT RA   G   T V   +  H+  IE+L+    +     L      +E+I+  
Sbjct: 369 YIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELL--SGENRGPILLPYQFRMEEIEGF 426

Query: 389 QHNHARKNNPIPQKSTGFDR----RKKNYSSQKSHIPLKESEK-ISKLQQDIQENDADSL 443
           ++        + +++    R    +++   S+K     +++ + +  L+ D+  + A   
Sbjct: 427 RYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVK 486

Query: 444 GFRGNMPAFMLPK 456
              G++P +++P 
Sbjct: 487 PHLGHVPDYLVPP 499


>gi|326473025|gb|EGD97034.1| ATP-dependent RNA helicase DBP10 [Trichophyton tonsurans CBS
           112818]
          Length = 941

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 125/406 (30%), Positives = 200/406 (49%), Gaps = 41/406 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+P ++ A+   G+  PTPIQ KTIPL+L   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 95  FQAMGLNPNLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 154

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 155 LRNHSTKVGA-RGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMASN 213

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I   V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 214 PDIIIATPGRFLHLKVEMNLDLSSIRYAVFDEADRLFEMGFAAQLTEILHALPTSRQTLL 273

Query: 183 FSATMTDELQKV----------------------------------------SENFLQNP 202
           FSAT+   L +                                                 
Sbjct: 274 FSATLPKSLVEFARAGLQEPTLIRLDADSKISPDLQSAFFTVKSADKEGALLHILHDIIK 333

Query: 203 KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLC 262
                      A+          ++  K+  +         T  + I+F   K +V  + 
Sbjct: 334 IPTGETEAGKLAKKEAQEGKQGTSKKRKRADMKGPGAHGTPTEHSTIVFVATKHHVEYIA 393

Query: 263 HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322
           + L   GF+V   +G+++Q +R   + NF+ G   ++V +D+AARG+DIP + +V N+D 
Sbjct: 394 NLLRHSGFAVSYAYGSLNQTARKIQVQNFRAGISNILVVTDVAARGIDIPVLANVINYDF 453

Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           P++ + YIHR+GRT RAG+ G +++LV   D  ++  ++  + +++
Sbjct: 454 PSQPKIYIHRVGRTARAGQKGWSYSLVRDSDAPYLIDLQLFLGRQL 499


>gi|318062704|ref|ZP_07981425.1| ATP-dependent RNA helicase [Streptomyces sp. SA3_actG]
          Length = 633

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 136/449 (30%), Positives = 215/449 (47%), Gaps = 9/449 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL   +V  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP+L  
Sbjct: 53  FAELGLPENIVRKLTQNGVTSPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLAS 112

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G    + PR +IL PTRELA QVAD  + YG   +L + ++ GG     Q   LERG
Sbjct: 113 LAGGFTDKKKPRGIILTPTRELAMQVADALQPYGDVLDLRMKVVCGGTSMSNQIYALERG 172

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+ D  NRG   +  + I ++DEAD+M D+GF+P +  +   VP   Q +L
Sbjct: 173 VDILVATPGRLRDLINRGACSLEKVRIAILDEADQMADLGFMPEVTELLDQVPAGGQRML 232

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ +E+  + + +L +P   EV+       T+ H  +       K            
Sbjct: 233 FSATLENEIDALVKRYLVDPIAHEVDAAQGAVTTMSHHILIV-----KPRDKAPVTAAIA 287

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L   G    A+HG + Q +R ++L++FK+G + ++VA+
Sbjct: 288 SRKGRTIIFVRTQLGADRVAEQLRDAGVKADALHGGMTQGARTRVLADFKDGYVNVLVAT 347

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L      + I  + +
Sbjct: 348 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSLSLPHQRRQIFRLME 407

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPL 422
                        +  +  L +I  A+     +     Q +   +R  ++ + +      
Sbjct: 408 DAGVDAARHQIGSAVFDAELAEITGARSMTEVQAESAGQSAKQAEREVEDLTRELERAKR 467

Query: 423 KESEKISKLQQDIQENDADSLGFRGNMPA 451
           + SE  ++  + +     +    RG  P 
Sbjct: 468 RASEYRAEADRLVARAARE----RGEEPP 492


>gi|67480889|ref|XP_655794.1| helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56472953|gb|EAL50406.1| helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 419

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 171/382 (44%), Gaps = 7/382 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+++ L  +++ A+ D G+  P+ +Q + IP  L + D+   A++G GKTA FV+ +L  
Sbjct: 35  FSNMNLKKEILMAITDCGFEHPSEVQSQVIPKALLKQDILCQAKSGMGKTAVFVISILNQ 94

Query: 63  LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      V      +    ++   ++     +       T   + G    +     
Sbjct: 95  GLCLGDYVSALVICHTRELAVQVQKEFDRMKKRLCEATGKEITTGTFVGGFDEKKDVEFI 154

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 ++I TPGRI     +G L ++ ++  VIDE D++L       I  I    P  +
Sbjct: 155 KTNKPTIVIGTPGRIASLVRQGALNLSKLDTFVIDECDKVLGSANEIDIGEIFISTPKEK 214

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT+++E + +   +L+N   + ++          H +        K+   +   
Sbjct: 215 QVMMFSATISEENKTICRKYLKNQLEVFIDDGEKLFLHGLHLYFKKLGDNDKRKTFMD-- 272

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +         I+F         L   L++ G+    ++G +DQ  R K    F++G  ++
Sbjct: 273 IIDYIDFNQAIVFVENSDRCRVLVKKLKQIGYPCGILYGRMDQEIREKEYQRFRDGESRV 332

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHI 357
           +V++DL  RG+D+  V  V NFD+PN ++ ++HR+GR GR G  G A + +   ED K +
Sbjct: 333 LVSTDLCGRGIDVAKVNLVVNFDMPNDSDQFLHRVGRAGRFGTKGVAISFIDTDEDEKVL 392

Query: 358 DAIEKLIEKKVDWLNGDLSSLN 379
             ++     ++D L   L  + 
Sbjct: 393 KEVQSRFAVQMDELPSSLKDIP 414


>gi|225681661|gb|EEH19945.1| ATP-dependent rRNA helicase rrp3 [Paracoccidioides brasiliensis
           Pb03]
          Length = 469

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 123/426 (28%), Positives = 197/426 (46%), Gaps = 23/426 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+   +  A    GY  PTPIQ + IPL LQ  D+ G+A+TG+GKTA+F LP+L 
Sbjct: 57  SFKDLGVIDSLCEACEALGYKTPTPIQTEAIPLALQGRDLIGLAETGSGKTAAFALPIL- 115

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +G     + RT    P  +  +Q A      G +       L        +      
Sbjct: 116 ---QGELLSFLLRTHWGNPANDPLSQSACAVIVGGMDMVPQAIALGKETSHHRRTPGRLL 172

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
                            +G         LV+DEADR+LD+ F P +  I  ++P  R+T 
Sbjct: 173 D-----------HLENTKGFSPPATSNTLVMDEADRLLDLDFGPILDKILKVLPRERRTY 221

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM+ +++ +    L NP R+ +++  S  +T+            K   +    L +
Sbjct: 222 LLSATMSSKVESLQRASLSNPLRVSISS--SKYQTVSTLLQTFLFIPHKYKDIYLVYLLN 279

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   ++ IIF         L   L   GF    +HG + Q  R+  L  F+  +  ++VA
Sbjct: 280 EFAGQSAIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSYRLGALGKFRSRSRDILVA 339

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP V  V NFD+P  ++ YIHR+GRT RAG+ G AF+ V + D++    IE
Sbjct: 340 TDVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFSFVTQYDLEVWLRIE 399

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
             ++KK++    +   +    +++  AQ +       I +     + R    ++ +   P
Sbjct: 400 NALDKKLEEYKVEKEEVMVLSDRVGEAQRHA------ITEMKNLHENRGTKGATLRGRRP 453

Query: 422 LKESEK 427
            K S++
Sbjct: 454 AKASKR 459


>gi|225020696|ref|ZP_03709888.1| hypothetical protein CORMATOL_00703 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305679783|ref|ZP_07402593.1| putative DEAD-box ATP-dependent RNA helicase CshA [Corynebacterium
           matruchotii ATCC 14266]
 gi|224946642|gb|EEG27851.1| hypothetical protein CORMATOL_00703 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305660403|gb|EFM49900.1| putative DEAD-box ATP-dependent RNA helicase CshA [Corynebacterium
           matruchotii ATCC 14266]
          Length = 470

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 134/391 (34%), Positives = 210/391 (53%), Gaps = 4/391 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG++ ++  A+   G +    IQ +T+P+ L   D+ G A+TG GKT  F +P+L 
Sbjct: 11  TFFELGVAIEITNALAQQGIIHTFAIQEQTLPIALDGRDIIGQARTGMGKTYGFGIPLLD 70

Query: 62  ILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +            PR L++ PTRELA QV+ +  K      + V  + GG P + Q   
Sbjct: 71  RVFDAADIAELDGTPRALVVTPTRELAIQVSTDLTKAAMFTPIRVTTVYGGRPIDEQRAV 130

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G DV++ TPGR+LD   RG L ++++ ILV+DEAD MLD+GF P ++ + + +    
Sbjct: 131 LDDGVDVVVGTPGRLLDLHKRGILRLDHVAILVLDEADEMLDLGFFPDVEKLLAALTHRH 190

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATM   +  ++  FL  P  I      +         V   + +  K A   ++
Sbjct: 191 QTMLFSATMPGPVLTLAREFLHQPVHIRAENVDAPQTHTTTNQVVFQSHHLDKKATCAKI 250

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ+ +     IIF   K++  +L   L K+GFSV A+HG++ Q +R   L+ F+   + +
Sbjct: 251 LQANNRG-KTIIFARTKRSAADLATDLAKRGFSVGAVHGDLGQAARETSLNAFRANRVDI 309

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ DV HV NF  P+    Y+HRIGRTGRAG  G A TLV  ++++   
Sbjct: 310 LVATDVAARGIDVDDVTHVINFQTPDDPMTYVHRIGRTGRAGHSGTAVTLVGYDELQKWR 369

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
            I   ++          S+       +DI +
Sbjct: 370 IINDELQLDNPEPPPWFSTSPELFSALDIPE 400


>gi|156057183|ref|XP_001594515.1| hypothetical protein SS1G_04322 [Sclerotinia sclerotiorum 1980]
 gi|154702108|gb|EDO01847.1| hypothetical protein SS1G_04322 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 638

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 102/405 (25%), Positives = 167/405 (41%), Gaps = 25/405 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F D GL P ++  V  AGY  PTPIQ   +P V + HDV   AQTG+GKTA+F++P+  
Sbjct: 156 KFEDAGLHPVMLENVKLAGYHVPTPIQQYCLPAVKKGHDVVACAQTGSGKTAAFLIPILS 215

Query: 60  -----------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT 102
                              +  +       P  +I+ P+RELA Q+ D   ++     L 
Sbjct: 216 KLMGKAKKLAAPRPNPATYVPSQDNYIKAEPLVVIVCPSRELATQIFDEARRFCYRTMLR 275

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
             ++ GG P   Q  +L +G D+LI TPGR+ D   R   L       ++ +    +   
Sbjct: 276 PCVVYGGGPLAEQLGQLAKGCDLLIGTPGRLCDMIRRPHALTLKRLKYMVIDEADEMLDS 335

Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
                           +  +     +    K++ +  +     +            H  +
Sbjct: 336 SWEEELRQIMSGGDQEEGNINYMMFSATFPKMARDIAKEHLAHDHVRIRVGRAGSSHSNI 395

Query: 223 ATYAQYSKKCALLQQLLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
                Y +  +  + L            IIF N K+    +   L        +IH +  
Sbjct: 396 KQDIIYVEAASKRKALYDLLLSIPPARTIIFVNTKRTADEIDDYLFNNDLPCTSIHSDRT 455

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNR----AENYIHRIGRT 336
           QR R   +  F+ G + +++A+ ++ARGLD+ ++ HV NFD+P++     E Y HRIGRT
Sbjct: 456 QREREDSIRAFRNGRMPILIATGVSARGLDVHNIMHVINFDLPSQAHGGIEEYTHRIGRT 515

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           GR G  G A +     +    +A+ K + +    +   L S  P 
Sbjct: 516 GRIGNRGLASSFYNDRNEDIAEALVKTLLETRQAVPDFLESYLPE 560


>gi|119492913|ref|XP_001263731.1| DEAD/DEAH box RNA helicase, putative [Neosartorya fischeri NRRL
           181]
 gi|119411891|gb|EAW21834.1| DEAD/DEAH box RNA helicase, putative [Neosartorya fischeri NRRL
           181]
          Length = 584

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 112/408 (27%), Positives = 164/408 (40%), Gaps = 26/408 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D GL P +   +    Y  PTPIQ   IP VL  HD+  IAQTG+GKTA+F++P+L+
Sbjct: 128 NFDDAGLHPIMRENIRLCNYEVPTPIQAYAIPAVLTGHDLIAIAQTGSGKTAAFLIPVLS 187

Query: 62  ILEKGRARVRMPRTL-------------------ILEPTRELAAQVADNFEKYGKNYNLT 102
            L     ++  PR                     I+ PTREL+ Q+ D   +      L 
Sbjct: 188 QLMGKAKKLAAPRPNLANGFDPSVDAVRAEPLVLIVAPTRELSTQIFDEARRLCYRSMLR 247

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
             ++ GG P   Q ++L++G D+LI TPGR+LD  ++  +L        I +    L + 
Sbjct: 248 PCVVYGGAPVREQREELQKGCDILIGTPGRLLDFMDKPHVLSLRRVKYTIIDEADELLLS 307

Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
                           +       M           L      E +              
Sbjct: 308 DWESDFTKIMSGGDVNEDADHRYMMFSATFNRECRRLARKFLAEDHVRIRIGRPGSTHIN 367

Query: 223 ATYAQYSKKCALLQQLLQS---QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                   +  L +Q L            +IF N K     L   L   G    +IH + 
Sbjct: 368 VDQTIIYAEDHLKKQCLYDLLLAMPPSRTLIFVNTKTQADFLDDFLYNMGLPSTSIHSDR 427

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNR----AENYIHRIGR 335
            QR R   L +F+     +MVA+ ++ARGLDI +V HV NFD+P+        YIHRIGR
Sbjct: 428 TQREREDALRSFRSARCPIMVATGVSARGLDIKNVMHVVNFDLPSATHGGITEYIHRIGR 487

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
           T R G  G A +     +      + K++ +    +   L S  P  E
Sbjct: 488 TARIGNEGLATSFYNDRNSDIAPDLVKILIETGQKVPDFLESYKPADE 535


>gi|124506095|ref|XP_001351645.1| ATP-dependent RNA Helicase, putative [Plasmodium falciparum 3D7]
 gi|23504573|emb|CAD51452.1| ATP-dependent RNA Helicase, putative [Plasmodium falciparum 3D7]
          Length = 1490

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 132/456 (28%), Positives = 214/456 (46%), Gaps = 21/456 (4%)

Query: 3    FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
            F   GL  K++  +    + K   IQ++TIP ++   DV  IA+TG+GKT S++ P++  
Sbjct: 725  FYQCGLPSKILQILEKKNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRH 784

Query: 63   --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               ++       P ++IL PTREL+ QV +  + Y K  N+ +  + GG     Q K L+
Sbjct: 785  VLHQEPLRNNDGPISIILTPTRELSIQVKNEAKIYCKAVNIEILAVYGGSNIARQLKVLK 844

Query: 121  RGADV---LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            +G ++          IL   N     +N +  +V+DEADR+LD+GF   I NI       
Sbjct: 845  KGVEILVGTPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNILRNCRKD 904

Query: 178  RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            +QT + SAT  + +Q +++  L  P  I V     T             + SKK   L +
Sbjct: 905  KQTAMISATFPNYIQNMAKKLLYKPIEIIVGEKGKTNNN--IYQFVEIIEESKKVFRLLK 962

Query: 238  LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            LL         +IF N++     L   L K  +++  +HG  DQ  R   L  FK+   +
Sbjct: 963  LLGEWIKYGLVLIFVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKEENK 1022

Query: 298  LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +++A+ + ARG+DI ++  V N+  P+  E+YIHRIGRTGR+   G A+T +   +    
Sbjct: 1023 VLIATSVMARGIDIKNIILVINYQCPDHIEDYIHRIGRTGRSNNIGYAYTFILPNEYTKA 1082

Query: 358  DAIEKLIEKKVDWLNG------DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
              I  L++  + +LN       DL ++     KI+        KN  +  K  G+     
Sbjct: 1083 YDIYNLLKNNIYYLNKTIDIPQDLENMIIEYTKINSINEKQKGKNKNLGYKGKGYKFTPD 1142

Query: 412  NYSSQKSHIPL--------KESEKISKLQQDIQEND 439
              S  +  I L        +E+++  KLQ D +  D
Sbjct: 1143 EKSRHQIDIALAKKELGLTQENDENEKLQVDDELGD 1178


>gi|71906768|ref|YP_284355.1| ATP-dependent RNA helicase DbpA [Dechloromonas aromatica RCB]
 gi|71846389|gb|AAZ45885.1| ATP-dependent RNA helicase DbpA [Dechloromonas aromatica RCB]
          Length = 466

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 134/411 (32%), Positives = 200/411 (48%), Gaps = 17/411 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L LSP ++  +    Y+  TPIQ  ++PL L  +D+   A+TG+GKTA+F L +L 
Sbjct: 10  SFDTLPLSPAMLANLAQLEYLSMTPIQAASLPLALAGNDLIAQAKTGSGKTAAFGLALLN 69

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNKKLE 120
            L   R  V+    ++L PTRELA QV     +  +       L + G      Q   LE
Sbjct: 70  RLNTSRFAVQ---AMVLCPTRELADQVTQEIRRLARFEENIKVLSLVGGSTLRNQANSLE 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGRI+DH  RG L ++ +  LV+DEADRMLDMGF   I  +    P  RQT
Sbjct: 127 KGVHIVVGTPGRIMDHMERGYLKLDELNTLVLDEADRMLDMGFHDDIAYVAKRCPAQRQT 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  ++  F     R                    Y     +       L 
Sbjct: 187 LLFSATYPEGIALLARQF----LRQPKEVKLLELHEETKIRQRFYEVKDDERLDAVVRLL 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + + FCN K+   +L + L   G     ++G+++QR R ++L  F   +  ++V
Sbjct: 243 KHYRPVSTLAFCNTKQQCRDLVNVLRHAGIHALTLNGDLEQRERDQVLIQFANRSCSVLV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N DV    E +IHRIGRTGR    G A +L +  D + +  I
Sbjct: 303 ATDVAARGLDIDQLEAVINVDVTPDPEIHIHRIGRTGRGDEEGWALSLCSSGDRRRVATI 362

Query: 361 EKLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            ++++ K+D L+       D S L PP+  + +      RK+   P    G
Sbjct: 363 AEMMKCKLDVLDLKTVEVTDDSPLVPPMSTLLML---GGRKDKIRPGDVMG 410


>gi|193222330|emb|CAL61847.2| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
          Length = 464

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 141/380 (37%), Positives = 210/380 (55%), Gaps = 10/380 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L LSP ++  +   GY + T IQ +++P++LQ  D+   A+TG+GKTA+F + ML 
Sbjct: 5   SFAALALSPPMLSNLDALGYREMTSIQAQSLPVILQLRDLIAQAKTGSGKTAAFGIGMLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L      ++    L++ PTRELA QV++   +  +  +    L +  G P   Q   LE
Sbjct: 65  KLNPTWFAIQ---GLVICPTRELADQVSNELRRLARFADNIKILTLCGGAPMRPQIASLE 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ DH +R  + ++ ++ LV+DEADRM+DMGF   I  I S  P  RQT
Sbjct: 122 HGAHIVVGTPGRLRDHISRNTINLSTVQTLVLDEADRMVDMGFYEEIAGIVSACPERRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D+++K S  FL++P  ++V      ++  +  +   Y   +   A L +   
Sbjct: 182 LLFSATYPDDIRKASAEFLRDPVEVKVEAQHDDSQIEQRFYEVGYDDRNAAVATLLK--- 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + + FCN K +   L   L  QGFS  A++G ++QR R +IL  F   +  ++V
Sbjct: 239 -HYRPVSTLAFCNTKIHCRELAAELRAQGFSALALYGELEQRERDEILVLFANQSCSVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +G V N DV    E +IHRIGRTGR    G A +L A  + K +  I
Sbjct: 298 ATDVAARGLDIQSLGAVINVDVSKDTEVHIHRIGRTGRGQDKGLALSLCAPNEKKWVKLI 357

Query: 361 EKLIEKKVDWLNGDLSSLNP 380
           E+  +K   W   DL S  P
Sbjct: 358 EEYQQKPAQWF--DLKSAEP 375


>gi|134094897|ref|YP_001099972.1| ATP-dependent RNA helicase DbpA [Herminiimonas arsenicoxydans]
          Length = 506

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 141/380 (37%), Positives = 210/380 (55%), Gaps = 10/380 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L LSP ++  +   GY + T IQ +++P++LQ  D+   A+TG+GKTA+F + ML 
Sbjct: 47  SFAALALSPPMLSNLDALGYREMTSIQAQSLPVILQLRDLIAQAKTGSGKTAAFGIGMLQ 106

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L      ++    L++ PTRELA QV++   +  +  +    L +  G P   Q   LE
Sbjct: 107 KLNPTWFAIQ---GLVICPTRELADQVSNELRRLARFADNIKILTLCGGAPMRPQIASLE 163

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ DH +R  + ++ ++ LV+DEADRM+DMGF   I  I S  P  RQT
Sbjct: 164 HGAHIVVGTPGRLRDHISRNTINLSTVQTLVLDEADRMVDMGFYEEIAGIVSACPERRQT 223

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D+++K S  FL++P  ++V      ++  +  +   Y   +   A L +   
Sbjct: 224 LLFSATYPDDIRKASAEFLRDPVEVKVEAQHDDSQIEQRFYEVGYDDRNAAVATLLK--- 280

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                 + + FCN K +   L   L  QGFS  A++G ++QR R +IL  F   +  ++V
Sbjct: 281 -HYRPVSTLAFCNTKIHCRELAAELRAQGFSALALYGELEQRERDEILVLFANQSCSVLV 339

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +G V N DV    E +IHRIGRTGR    G A +L A  + K +  I
Sbjct: 340 ATDVAARGLDIQSLGAVINVDVSKDTEVHIHRIGRTGRGQDKGLALSLCAPNEKKWVKLI 399

Query: 361 EKLIEKKVDWLNGDLSSLNP 380
           E+  +K   W   DL S  P
Sbjct: 400 EEYQQKPAQWF--DLKSAEP 417


>gi|148222272|ref|NP_001086456.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Xenopus laevis]
 gi|117167895|gb|AAI24841.1| LOC446276 protein [Xenopus laevis]
          Length = 614

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 118/455 (25%), Positives = 214/455 (47%), Gaps = 22/455 (4%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     +  K++  V DAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 168 TFQQLEQEYKILSKIMQNVKDAGFHTPTPIQMQAIPIMLHDREILASAPTGSGKTMAFSI 227

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQN 116
           P+L  L+  + +      L++ PTRELA+Q      K        + ++    +  +   
Sbjct: 228 PILAHLQCPKNKGCR--ALVISPTRELASQTHRELVKLSDGIGFRIHVIDKAAVSAKRFG 285

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++    +    ++  ++E L++DE+D++ + G   +        
Sbjct: 286 PKSSKKIDILVTTPNRLIYLLKQDPPGIDLSSVEWLIVDESDKLFEDGKTGFRDQLASIF 345

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT   ++++  +  L N   + V   +S  ET+E   +   ++  K
Sbjct: 346 VACTSHLLKRAMFSATFAFDVEQWCKLHLDNVVSVSVGARNSAVETVEQSLLFVGSETGK 405

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+  + L  +      ++F    +    L H L  +G +V  IH    Q+ R  ++ +
Sbjct: 406 LLAM--RDLVKKGFAPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNVIQS 463

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+EG I +++ + L ARG+D   V  V N+D P  A  YIHRIGRTGRAG  GKA +   
Sbjct: 464 FREGKIWVLICTALLARGIDFKGVNMVINYDFPAGAVEYIHRIGRTGRAGHKGKAVSFFT 523

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI---PQKSTGFD 407
           ++D   + ++  +I+K    +   + S     +K          K + I   P+      
Sbjct: 524 EDDKPMLRSVASVIQKAGCPIPDYIKSFRKLQKKQKKRMIKRPLKRDQIRTTPKYILEKA 583

Query: 408 RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADS 442
           +RK+N   +     LKE EK+S  + + Q    ++
Sbjct: 584 KRKRNIIKRN----LKEKEKVSAQEDNKQPEAHET 614


>gi|332076039|gb|EGI86505.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
           GA41301]
          Length = 411

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 118/415 (28%), Positives = 195/415 (46%), Gaps = 12/415 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +   +  +
Sbjct: 61  QQLDEASDSVQAV---ITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T             
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  +    +
Sbjct: 237 --TQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412
             +EKL    + +    +             + N  +K + +  +  G  ++K+ 
Sbjct: 355 RELEKL---GIKFSPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKRK 406


>gi|310791524|gb|EFQ27051.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 550

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 118/430 (27%), Positives = 199/430 (46%), Gaps = 17/430 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ + + P +V ++ +    +PT IQ   IP +L+  D  G ++TG+GKT +F +P+L 
Sbjct: 121 TFSAINVRPWLVQSLANMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQ 180

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +          L+L PTRELA Q+ + F+      +L   L+ GG     Q   L +
Sbjct: 181 KWAE---DPTAIFALVLTPTRELALQIFEQFKAISSPQSLKAILVTGGSDMRPQAIALAQ 237

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM--------GFIPYIQNITSL 173
              V+I TPGR+ DH              V        D           IP ++   S+
Sbjct: 238 RPHVVIATPGRLADHIRTSGEDTICGLRRVKYVVLDEADRLLDATGPGSMIPDVEECLSV 297

Query: 174 VPFTRQTLL--FSATMTDELQ----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           +P + Q     F+AT+T E++       +   Q     EV+T S                
Sbjct: 298 LPPSSQRQTLLFTATITPEVRALKDMPLKPGKQPVFVCEVDTQSLAIPATLSQMHLQVPV 357

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             ++  L   LL   +  K+ IIFCN+      L H L      V ++H  + QR R+  
Sbjct: 358 THREHYLHTFLLTDGNVEKSVIIFCNRTSTADYLHHLLRLLDHRVTSLHSGLPQRQRVDN 417

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L  F+    +++VA+D+A+RGLDIP+V  V N+D+P   ++YIHR+GRT RAGR G+A T
Sbjct: 418 LGRFRAAAARILVATDVASRGLDIPEVALVINYDIPRNPDDYIHRVGRTARAGRKGEAVT 477

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
            V + D++ + AIE  + ++++    +  +L   + +  +   +  ++   +  +     
Sbjct: 478 FVGQRDVELVLAIEARVGRQMEAWQEEGVNLETRVLRDSLKVVSEKKREALLELEEGREV 537

Query: 408 RRKKNYSSQK 417
             K+  + QK
Sbjct: 538 GGKRKRTKQK 547


>gi|237731652|ref|ZP_04562133.1| ATP-dependent RNA helicase DbpA [Citrobacter sp. 30_2]
 gi|226907191|gb|EEH93109.1| ATP-dependent RNA helicase DbpA [Citrobacter sp. 30_2]
          Length = 457

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 136/383 (35%), Positives = 214/383 (55%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY++ TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPAAQLENLNELGYLEMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF AQ   L+
Sbjct: 64  HIDAALFQTQS---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  +S    QNP  IE++T     + +       +   S     L Q L 
Sbjct: 181 LLFSATWPEAIAAISGRVQQNPLTIEIDTV----DALPAIEQQFFETSSHGKIPLLQKLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN KK+   +C +L   G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SQHQPASCVVFCNTKKDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + +
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIL 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
            ++++ K++WL    +    PLE
Sbjct: 357 SEMLQLKLNWLTAPANGSILPLE 379


>gi|302682610|ref|XP_003030986.1| hypothetical protein SCHCODRAFT_77182 [Schizophyllum commune H4-8]
 gi|300104678|gb|EFI96083.1| hypothetical protein SCHCODRAFT_77182 [Schizophyllum commune H4-8]
          Length = 775

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 123/469 (26%), Positives = 207/469 (44%), Gaps = 27/469 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL +S      +  A ++  T +Q K++P+ L+  DV G A+TG+GKT +F++P+L I
Sbjct: 54  FSDLPISQATKRGLKKAAFINMTDVQAKSLPVSLKGKDVLGAARTGSGKTLAFLIPVLEI 113

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +         LI+ PTRELA Q+ +     G  ++ +  L+IGG   + +  +L R
Sbjct: 114 LYRRKWGPADGLGALIISPTRELAVQIFEVLRSIGPFHSFSAGLVIGGKNLKDERDRLVR 173

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +           +N+++LV+DEADR+LDMGF   +  +   +P +RQTL
Sbjct: 174 MNILVATPGRLLQHMDQTYGFECDNLQVLVLDEADRILDMGFAKTLSALLGHLPKSRQTL 233

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239
           LFSAT TD +  ++   L +P  I       +                   +   L    
Sbjct: 234 LFSATQTDSVSDLARLSLTDPAFIATKEAEESHTATTPKNLEQHYAICTLDQKLDLLWSF 293

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC--AIHGNIDQRSRMKILSNFKEGTIQ 297
                    ++F +  K V  +  +  K    V    +HG   Q +R+ +   F + +  
Sbjct: 294 IKTHLQSKTLVFLSSCKQVRFVYETFCKMQPGVSLLHLHGKQKQMTRLAMYDRFTKMSHV 353

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ A+D+AARGLD P V  V   D P   E YIHR+GRT R    GK    +   + + +
Sbjct: 354 VLFATDIAARGLDFPAVDWVLQLDAPEDVETYIHRVGRTARYESKGKGLLFLMPSEEEGM 413

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             +    ++ +D            ++KI I         N +  +   F   +  Y  Q+
Sbjct: 414 --LAAFAKRDID------------IKKIKIRPSKTQNIENQL--QKLAFQEPEIKYLGQR 457

Query: 418 SHIP------LKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
           + +       L + + I K+ Q   +  A+SLG  G      L K   K
Sbjct: 458 AFVSYLRSVYLHKDKSIFKVDQLPVDRYAESLGLPGTPKIKFLSKELAK 506


>gi|320653569|gb|EFX21674.1| ATP-dependent RNA helicase DbpA [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 457

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 202/370 (54%), Gaps = 9/370 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDW 370
             +++ K++W
Sbjct: 357 SDMLQIKLNW 366


>gi|209771328|gb|ACI83976.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|320642613|gb|EFX11861.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H- str.
           493-89]
 gi|320647966|gb|EFX16674.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H- str. H
           2687]
          Length = 457

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 202/370 (54%), Gaps = 9/370 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDW 370
             +++ K++W
Sbjct: 357 SDMLQIKLNW 366


>gi|219119904|ref|XP_002180703.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408176|gb|EEC48111.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 589

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 101/406 (24%), Positives = 175/406 (43%), Gaps = 8/406 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS K    + D G+ + T IQ K IP +L   D+ G A+TG+GKT +F++P + 
Sbjct: 99  TFENLPLSEKTKYGLNDLGFTRMTQIQSKAIPPLLTGKDLIGAAKTGSGKTLAFLIPCIE 158

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNF----EKYGKNYNLTVALLIGGIPFEAQNK 117
           +L K +   +    +I+       A            +GK+      ++ G        +
Sbjct: 159 LLHKAKFTSKNGTGVIVISPTRELAMQIYGVLQELCTHGKHSQTYGLIMGGANRRTESER 218

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             +    ++      +    N    +  N+  LV+DEADR+L+ GF   +++I  L+P  
Sbjct: 219 LAKGVNVIVCTPGRLLDHLQNTKAFVFRNLLALVMDEADRILEQGFEDDLRSILKLLPKE 278

Query: 178 RQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           RQT+LFSAT T +++     +              +   T            S K  LL 
Sbjct: 279 RQTMLFSATQTKKVEDLARLSINPKNSVFVDIPSDTNLATAAGLEQGYVTCPSDKRFLLL 338

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                ++  K  ++F +   +V      L      V  IHG   Q  R      F +  I
Sbjct: 339 FTFLKKNKKKKIMVFFSSCNSVKYHAELLNYIDVPVMDIHGRQKQVKRTTTFFQFCKSDI 398

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIK 355
             M+ +D+AARGLDIP V  +  FD P+  + YIHR+GRT R  +  G+A   +  E+  
Sbjct: 399 GTMLCTDVAARGLDIPRVDWIIQFDPPDDPKEYIHRVGRTARGAKGSGRALLFLTPEETG 458

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
            +  ++  K+   + D+    ++++   L ++  + +   R +   
Sbjct: 459 FLRYLKAAKVTLNEYDFPTTKVANVQSQLYRLIESNYYLNRASRDA 504


>gi|150951242|ref|XP_001387532.2| ATP-dependent RNA helicase DBP4 (Helicase CA4) (Helicase UF1)
           [Scheffersomyces stipitis CBS 6054]
 gi|284018077|sp|A3GGE9|DBP4_PICST RecName: Full=ATP-dependent RNA helicase DBP4
 gi|149388432|gb|EAZ63509.2| ATP-dependent RNA helicase DBP4 (Helicase CA4) (Helicase UF1)
           [Pichia stipitis CBS 6054]
          Length = 765

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 119/454 (26%), Positives = 218/454 (48%), Gaps = 23/454 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL ++ + +  + ++ ++  T IQ KTIP+ L+  D+ G A+TG+GKT +F++P++ 
Sbjct: 48  QFSDLPITQETLRGLNESSFMSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPVVE 107

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L + +         LI+ PTRELA Q  +   K GK    +  L+ GG   + + +++ 
Sbjct: 108 SLIRNKITEHDGLAALIVSPTRELAVQTFEVLTKIGKYNTFSAGLVTGGKDVQYEKERVS 167

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++               +  +N+++LV+DEADR LDMGF   I NI   +P TRQT
Sbjct: 168 RMNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNIVGHLPPTRQT 227

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT++D ++ ++   L NPKRI V++    + T E            +   +     
Sbjct: 228 LLFSATVSDSVKDLARLSLTNPKRIGVSSDQDVSATPESLDQYYIRIPLDEKLDVLWSFI 287

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC--AIHGNIDQRSRMKILSNFKEGTIQL 298
                   ++F +  K V     +       +    ++G   Q SR++    F +     
Sbjct: 288 KSHLKSKILVFFSSSKQVQYAYETFRTLQPGISLLKLYGRHKQTSRLETTVKFTQAQYAC 347

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+ ARGLD P +  V   D P  A  Y+HR+GR  R GR GK+  ++   + + + 
Sbjct: 348 LFATDIVARGLDFPAIDWVVQVDCPEDAVTYVHRVGRAARFGRQGKSLLMLLPSEEEGM- 406

Query: 359 AIEKLIEKKVDWLNGDL-----SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            +++L   K++    ++      S+ P L+ +           +P+ +     +  ++ +
Sbjct: 407 -LKRLENNKIEPKFMNIKQKSKKSIRPQLQSLCF--------KDPMIK-----NLGQRAF 452

Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
            S    + +++ + + K+++   E  A SLG  G
Sbjct: 453 ISYYKSVYIQKDKDVFKVEELPSEKYAASLGLPG 486


>gi|119492517|ref|XP_001263624.1| eukaryotic translation initiation factor 4, putative [Neosartorya
           fischeri NRRL 181]
 gi|134034146|sp|A1D7N3|IF4A_NEOFI RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|119411784|gb|EAW21727.1| eukaryotic translation initiation factor 4, putative [Neosartorya
           fischeri NRRL 181]
          Length = 398

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P+++  +   G+ +P+ IQ + I  +++ +DV   AQ+GTGKTA+F +  L 
Sbjct: 26  SFDSMELKPELLRGIYAYGFERPSAIQQRAILPIIKGNDVIAQAQSGTGKTATFSISALQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     V+  + LIL PTRELA Q+       G   N+     IGG       K L+ 
Sbjct: 86  KLDPN---VKGCQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTNVREDMKALQE 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +N+++ ++DEAD ML  GF   I +I  L+P + Q +
Sbjct: 143 GPQVVVGTPGRVQDMIQRRVLRTDNLKMFILDEADEMLSRGFTEQIYDIFQLLPQSTQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 203 LLSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A
Sbjct: 261 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIA 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 321 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 381 QFYSTQIEEMPMNVADL 397


>gi|15801822|ref|NP_287840.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 EDL933]
 gi|15831181|ref|NP_309954.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           Sakai]
 gi|168749013|ref|ZP_02774035.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756028|ref|ZP_02781035.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4401]
 gi|168769429|ref|ZP_02794436.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775172|ref|ZP_02800179.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4196]
 gi|168782877|ref|ZP_02807884.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4076]
 gi|168788327|ref|ZP_02813334.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC869]
 gi|168799657|ref|ZP_02824664.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC508]
 gi|208811167|ref|ZP_03253000.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815022|ref|ZP_03256201.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820345|ref|ZP_03260665.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4042]
 gi|209399223|ref|YP_002270403.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4115]
 gi|217329397|ref|ZP_03445477.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           TW14588]
 gi|254792938|ref|YP_003077775.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           TW14359]
 gi|261224337|ref|ZP_05938618.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257409|ref|ZP_05949942.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291282438|ref|YP_003499256.1| ATP-independent RNA helicase DbpA [Escherichia coli O55:H7 str.
           CB9615]
 gi|331652393|ref|ZP_08353412.1| ATP-independent RNA helicase DbpA [Escherichia coli M718]
 gi|12515409|gb|AAG56454.1|AE005371_10 ATP-dependent RNA helicase [Escherichia coli O157:H7 str. EDL933]
 gi|13361392|dbj|BAB35350.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. Sakai]
 gi|187769343|gb|EDU33187.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4196]
 gi|188016533|gb|EDU54655.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999660|gb|EDU68646.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356796|gb|EDU75215.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361561|gb|EDU79980.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4486]
 gi|189371812|gb|EDU90228.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC869]
 gi|189377976|gb|EDU96392.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC508]
 gi|208724673|gb|EDZ74381.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731670|gb|EDZ80358.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740468|gb|EDZ88150.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160623|gb|ACI38056.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4115]
 gi|209771330|gb|ACI83977.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209771332|gb|ACI83978.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209771334|gb|ACI83979.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209771336|gb|ACI83980.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|217317836|gb|EEC26264.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           TW14588]
 gi|254592338|gb|ACT71699.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O157:H7 str. TW14359]
 gi|290762311|gb|ADD56272.1| ATP-independent RNA helicase DbpA [Escherichia coli O55:H7 str.
           CB9615]
 gi|320189895|gb|EFW64547.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC1212]
 gi|320659158|gb|EFX26750.1| ATP-dependent RNA helicase DbpA [Escherichia coli O55:H7 str. USDA
           5905]
 gi|326340988|gb|EGD64781.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           1125]
 gi|326343226|gb|EGD66993.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           1044]
 gi|331050671|gb|EGI22729.1| ATP-independent RNA helicase DbpA [Escherichia coli M718]
          Length = 457

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 202/370 (54%), Gaps = 9/370 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDW 370
             +++ K++W
Sbjct: 357 SDMLQIKLNW 366


>gi|156406516|ref|XP_001641091.1| predicted protein [Nematostella vectensis]
 gi|156228228|gb|EDO49028.1| predicted protein [Nematostella vectensis]
          Length = 620

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 120/425 (28%), Positives = 202/425 (47%), Gaps = 14/425 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F     +  +   + + GY  PTPIQ++ +P++L   DV   A TG+GKTASF+LPM+
Sbjct: 196 LEFFHCSFNESLSKNLSNHGYHSPTPIQMQVLPVLLSGRDVMVCASTGSGKTASFLLPMI 255

Query: 61  TILEKGRAR-------VRMPRTLILEPTRE-LAAQVADNFEKYGKNYNLTVALLIGGIPF 112
           + +     +       VR    LIL PTRE          E      N+  ALLIGG+P 
Sbjct: 256 SRIHHITGKLLPSSPEVRFIYGLILAPTRELCMQIEKQTKEFVHGMTNMRTALLIGGVPV 315

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q  +L+ G  V++ TPGR+++  +R  + + ++   V+DE D ML +GF   +Q I  
Sbjct: 316 PPQLHRLKMGVQVIVATPGRMVEIISRQAVDLTHVIGCVVDEVDTMLQLGFEQQVQQILE 375

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +   RQT+LFSAT+   ++ ++   L  P  I   +PS   + ++   +    +  KK 
Sbjct: 376 RLSNRRQTMLFSATIPPSIEAMASRLLNAPVFISAGSPSLPTKAVKQLILWVEEKSKKKQ 435

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                           +   ++    +      +       ++HG+  Q  R +IL +F 
Sbjct: 436 LFSILKDSRHFNPPAVVFVESKLGADMLAEAVSKVCHIKCLSMHGDKPQAERAQILQDFL 495

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G   L+V++ +  RG+D+ ++  V NFD+P   E Y+H+IGR GR G  G + + +   
Sbjct: 496 AGECPLVVSTAVLGRGVDLLNIRQVINFDMPPTYEEYVHQIGRAGRLGATGWSISFINNA 555

Query: 353 DIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKSTGFD--- 407
                +  I KL    V  L  +L+     L++   A ++  R + + I  +S   D   
Sbjct: 556 SKGLFLQLINKLQPMGV-KLPDELTRSAHVLDERRRASNSRKRAEKDEIVNQSNLMDLIV 614

Query: 408 RRKKN 412
           +RKKN
Sbjct: 615 KRKKN 619


>gi|86148322|ref|ZP_01066616.1| putative ATP-dependent RNA helicase [Vibrio sp. MED222]
 gi|85833877|gb|EAQ52041.1| putative ATP-dependent RNA helicase [Vibrio sp. MED222]
          Length = 428

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 137/389 (35%), Positives = 216/389 (55%), Gaps = 18/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F+DLGL   ++  + +  Y +PTPIQ + IP VL   D+   A TG+GKTA+F LP+L 
Sbjct: 9   NFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAERDLIAGANTGSGKTAAFALPLLQ 68

Query: 62  ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113
            + +         +      LIL PTRELA QVAD+ + Y  ++N  +    + GG+   
Sbjct: 69  KIHEDAPLDRRSGKGNYVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVN 128

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L  G D+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  I  L
Sbjct: 129 TQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKL 188

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  +QTLLFSAT  ++++ ++   L +P  +++ + +++        V    + +    
Sbjct: 189 LPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAH 248

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L+QQ        +  +IF N K +  +L   L K+G      HG+  Q SR +IL +FK 
Sbjct: 249 LIQQHEW-----RQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKS 303

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I +++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G A +L+  ED
Sbjct: 304 GEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHED 363

Query: 354 IKHIDAIEK-----LIEKKVDWLNGDLSS 377
             H   IEK     L  ++++    D  +
Sbjct: 364 YHHFTIIEKKNKIRLEREQIEGFEVDAEA 392


>gi|68061551|ref|XP_672775.1| RNA helicase [Plasmodium berghei strain ANKA]
 gi|56490118|emb|CAI02126.1| RNA helicase , putative [Plasmodium berghei]
          Length = 434

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 123/423 (29%), Positives = 199/423 (47%), Gaps = 48/423 (11%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL     ++  + +  + +PT IQ  T P+ L   D+ G+A+TG+G T +FVLP L 
Sbjct: 14  QFSDLDFHESILNYLNEK-FKEPTAIQKITWPIALSGKDLIGVAETGSG-TLAFVLPCLM 71

Query: 62  ILEKGRARVR-----------------------------------------MPRTLILEP 80
            + K + +                                               LIL P
Sbjct: 72  HILKHKQKEMEENGVEHIKNNEEKLSENNNNDNNYDPDFEKEFQNDDSENRKTYGLILLP 131

Query: 81  TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140
           TREL  QV +  + +    NL    + GG+P   Q   +++GAD+++ TPGR+LD+   G
Sbjct: 132 TRELCMQVLNEIKNFESELNLKAVAVYGGVPKYFQINNIKKGADIIVATPGRLLDYLENG 191

Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200
            + +     +VIDEADR+LDMGF   ++ I + V   +Q L  +AT  ++++K++ +F  
Sbjct: 192 IINLLRCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFLTATWPEQVRKLAYDFCS 251

Query: 201 NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVN 260
                     S              +        L   L+        +IFC+ K+N  N
Sbjct: 252 FDPVKIQIGKSELTANKNIEQQVIVSSSIDLKKKLLDWLKDNYENNKILIFCDTKRNCDN 311

Query: 261 LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNF 320
           LC  L    ++  +IHG+  QR R +IL+N+K     ++VA+D+A+RGLDI ++  V N+
Sbjct: 312 LCKELRYHQYNSLSIHGDKQQRERDRILNNYKNDRCNILVATDVASRGLDIKNISIVINY 371

Query: 321 DVPNRAENYIHRIGRTGRAGRHGKAFTL-----VAKEDIKHIDAIEKLIEKKVDWLNGDL 375
           D+PN  E+YIHRIGRTGRAG  G++           +  +    + KL+ K    +  +L
Sbjct: 372 DIPNTIEDYIHRIGRTGRAGNKGQSILFFPYDYYVPQKQRFAKDLIKLLNKTNQQVPKEL 431

Query: 376 SSL 378
             +
Sbjct: 432 REI 434


>gi|71409597|ref|XP_807135.1| nucleolar RNA helicase II [Trypanosoma cruzi strain CL Brener]
 gi|70871069|gb|EAN85284.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
          Length = 633

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 109/386 (28%), Positives = 169/386 (43%), Gaps = 19/386 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F+D  L P  V A+   G     P+Q  T   +++  +V   A+TG+GKT +F +P+   
Sbjct: 52  FSDFDLLPNTVEALKSQGITTLFPVQALTYEAIMKGSNVLVQARTGSGKTLAFGIPIVEK 111

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   +   R R P  +I  PTRELA QV D      K + +T          + + 
Sbjct: 112 LARTTKSNEQPVRGRGPAAVIFCPTRELAIQVRDVIAGISKGFVVTALYGGVAYSTQERA 171

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV-- 174
                G DV++ TPGR  D   +  L  + ++++ +DEAD MLD+GF   I+ +   V  
Sbjct: 172 L--YSGVDVVVATPGRAKDFLEKRTLCFDRVKVVCLDEADHMLDIGFKDDIELLLQKVAE 229

Query: 175 -------PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
                    T QTLLFSAT+ + +   S           V   +  A      +      
Sbjct: 230 QNGSTEGNPTHQTLLFSATVPEWVHTCSFIPRNKEFIDMVGQGTMRAANTIKFYRRKCHF 289

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
               C L   +          ++F N KK   +L  +  K         G++ Q  R   
Sbjct: 290 SEVSCMLADLVKVYSGRHGRTLVFTNTKKECHDLSINNTKLDSQCLH--GDMQQEQREST 347

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           + +F++    +++A+D+AARGLD+P V  V     P   + +IHR GRTGRAGR G    
Sbjct: 348 MKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVL 407

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNG 373
           L   +D   ++ IE+  + K + L  
Sbjct: 408 LHQPKDEYIVERIERHAKIKFEVLPA 433


>gi|148989841|ref|ZP_01821135.1| peptide chain release factor 2 [Streptococcus pneumoniae SP6-BS73]
 gi|147924783|gb|EDK75867.1| peptide chain release factor 2 [Streptococcus pneumoniae SP6-BS73]
          Length = 401

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 114/366 (31%), Positives = 180/366 (49%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +   +  +
Sbjct: 61  QQLDEASDSVQAV---ITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T             
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  +    +
Sbjct: 237 --TQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EKL
Sbjct: 355 RELEKL 360


>gi|333025550|ref|ZP_08453614.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
 gi|332745402|gb|EGJ75843.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
          Length = 734

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 136/449 (30%), Positives = 215/449 (47%), Gaps = 9/449 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL   +V  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP+L  
Sbjct: 53  FAELGLPENIVRKLTQNGVTSPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLAS 112

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G    + PR +IL PTRELA QVAD  + YG   +L + ++ GG     Q   LERG
Sbjct: 113 LAGGFTDKKKPRGIILTPTRELAMQVADALQPYGDVLDLRMKVVCGGTSMSNQIYALERG 172

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+ D  NRG   +  + I ++DEAD+M D+GF+P +  +   VP   Q +L
Sbjct: 173 VDILVATPGRLRDLINRGACSLEKVRIAILDEADQMADLGFMPEVTELLDQVPAGGQRML 232

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ +E+  + + +L +P   EV+       T+ H  +       K            
Sbjct: 233 FSATLENEIDALVKRYLVDPVAHEVDAAQGAVTTMSHHILIV-----KPRDKAPVTAAIA 287

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L   G    A+HG + Q +R ++L++FK+G + ++VA+
Sbjct: 288 SRKGRTIIFVRTQLGADRVAEQLRDAGVKADALHGGMTQGARTRVLADFKDGYVNVLVAT 347

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L      + I  + +
Sbjct: 348 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSLSLPHQRRQIFRLME 407

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPL 422
                        +  +  L +I  A+     +     Q +   +R  ++ + +      
Sbjct: 408 DAGVDAARHQIGSAVFDAELAEITGARSMTEVQAESAGQSAKQAEREVEDLTRELERAKR 467

Query: 423 KESEKISKLQQDIQENDADSLGFRGNMPA 451
           + SE  ++  + +     +    RG  P 
Sbjct: 468 RASEYRAEADRLVARAARE----RGEEPP 492


>gi|297562761|ref|YP_003681735.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296847209|gb|ADH69229.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 516

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 132/413 (31%), Positives = 207/413 (50%), Gaps = 12/413 (2%)

Query: 9   SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
           S ++  A+   G ++P  IQ   +P+ L   D+ G A+TGTGKT +F LP+L   +K   
Sbjct: 2   STELADALEAEGIIEPFLIQELALPIALGGSDIIGQARTGTGKTLAFGLPLLQRAQKDPG 61

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
             + PR L++ PTRELA QVA +     K     +  + GG  +E Q   L+ G DV++ 
Sbjct: 62  TPKRPRALVVVPTRELAIQVAADLTTASKRSGTRILTVYGGRSYEPQVNGLKEGTDVVVG 121

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR+LD   +  L ++ +  +V+DEAD+MLD+GF+P I+ I +  P  RQT+LFSATM 
Sbjct: 122 TPGRLLDLEKQKHLRLDGVSAVVLDEADKMLDLGFLPDIERILTRTPDDRQTMLFSATMP 181

Query: 189 DELQKVSENF--LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
            E+  +S  +       R   +     +          +  +      +   L       
Sbjct: 182 SEIVSLSRKYLRRPTHVRASDDDEIDGSAITGQITQHAFRTHQMDKIEMLARLLQASDHG 241

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             ++FC  K+    +   LE +GF+V A+HG++ Q  R + L  F+ G I ++VA+D+AA
Sbjct: 242 QSMVFCQTKRACDRVAGDLEARGFAVAAVHGDLGQSQRERALRAFRNGKINILVATDVAA 301

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLD+ DV HV N++ P   + Y HRIGRTGRAGR G A T V  +++     I   +  
Sbjct: 302 RGLDVDDVTHVVNYETPEDEKTYTHRIGRTGRAGRSGTAVTFVDWQEMPRWKLINGALGL 361

Query: 367 KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
                       + P E    + H       P   K    + R+ +++  ++ 
Sbjct: 362 P----------FHEPEETYSTSPHFFEALRIPAGTKGKLAEDRRDDHAGLEAE 404


>gi|157145669|ref|YP_001452988.1| ATP-dependent RNA helicase DbpA [Citrobacter koseri ATCC BAA-895]
 gi|157082874|gb|ABV12552.1| hypothetical protein CKO_01417 [Citrobacter koseri ATCC BAA-895]
          Length = 457

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 135/383 (35%), Positives = 215/383 (56%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY++ TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPAAQLENLNELGYLEMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF AQ   L+
Sbjct: 64  HIDASLFQTQS---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ ++ LV+DEADRMLDMGF   I  +    P  RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPSRRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  +S    QNP  IE+++     + +       +   S+    L Q L 
Sbjct: 181 LLFSATWPEAIAAISGRVQQNPLTIEIDSV----DALPSIEQQFFETSSQGKIPLLQKLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN KK+  ++C +L   G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SQHQPASCVVFCNTKKDCQSVCDALNSVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + +
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIL 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
            ++++ K++WL    +    PLE
Sbjct: 357 SEMLQLKLNWLTPPGNVPVAPLE 379


>gi|67604496|ref|XP_666618.1| DEAD-box RNA helicase [Cryptosporidium hominis TU502]
 gi|54657648|gb|EAL36388.1| DEAD-box RNA helicase [Cryptosporidium hominis]
          Length = 518

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 101/411 (24%), Positives = 183/411 (44%), Gaps = 34/411 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           D++DL LSP ++  + + G+ +P+ IQ   +PL+L    ++   A  G+GKTA+F L ML
Sbjct: 113 DWSDLNLSPDLLKGIYNKGFNRPSKIQAAALPLILNSPMNLIAQAHNGSGKTATFALAML 172

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++    R+  P+ + L PTRELA Q  D   + GK   +T  L++       +     
Sbjct: 173 GKVDT---RIIHPQCMCLCPTRELARQNQDVVNELGKFTGITTWLVVAQGDKYDK----T 225

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G+ ++ICTPG++ D   +       ++++VIDEAD M+D   +   Q       F +  
Sbjct: 226 IGSQIIICTPGKMQDFLKKRSFPTEFMKLMVIDEADEMIDHRNMMASQVGQIRKFFRQNL 285

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +   + T   +         P   ++N                              L 
Sbjct: 286 QILLFSATYHEEVRLFAEKIVPNANKINVKKEELTLNTIQQFYVICNDDADKLSFLSDLY 345

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH-------GNIDQRSRMKILSNFKE 293
           +  ++   IIF N +K   ++  ++ + G ++  I          +D   R +++ +F+ 
Sbjct: 346 ACMSIGQSIIFVNTRKTAFSIAENMRRDGHAISVICGTQTNSGEKMDHEIRDQVMDSFRS 405

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA-------------------ENYIHRIG 334
           G  ++++A+D+ +RG+D+P V  V NFD+P R                    E Y+HRIG
Sbjct: 406 GESKVLIATDVLSRGIDVPQVTLVINFDIPVRFNSTNSIDIVNQISSVQVENETYLHRIG 465

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
           RTGR G +G +   +    +  I  I+   +  +  ++ DL  L   L+ +
Sbjct: 466 RTGRFGLNGISINFILPHQLSLIQQIQDYYDCNIQLIDKDLEHLEQILKSL 516


>gi|66361672|ref|XP_627359.1| Dbp5p-like eIF4A-1-family RNA SFII helicase [Cryptosporidium parvum
           Iowa II]
 gi|46228737|gb|EAK89607.1| Dbp5p-like eIF4A-1-family RNA SFII helicase [Cryptosporidium parvum
           Iowa II]
 gi|323508811|dbj|BAJ77299.1| cgd8_4750 [Cryptosporidium parvum]
          Length = 518

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 101/411 (24%), Positives = 183/411 (44%), Gaps = 34/411 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
           D++DL LSP ++  + + G+ +P+ IQ   +PL+L    ++   A  G+GKTA+F L ML
Sbjct: 113 DWSDLNLSPDLLKGIYNKGFNRPSKIQAAALPLILNSPMNLIAQAHNGSGKTATFALAML 172

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++    R+  P+ + L PTRELA Q  D   + GK   +T  L++       +     
Sbjct: 173 GKVDT---RIIHPQCMCLCPTRELARQNQDVVNELGKFTGITTWLVVAQGDKYDK----T 225

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G+ ++ICTPG++ D   +       ++++VIDEAD M+D   +   Q       F +  
Sbjct: 226 IGSQIIICTPGKMQDFLKKRSFPTEFMKLMVIDEADEMIDHRNMMASQVGQIRKFFRQNL 285

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +   + T   +         P   ++N                              L 
Sbjct: 286 QILLFSATYHEEVRLFAEKIVPNANKINVKKEELTLNTIQQFYVICNDDADKLSFLSDLY 345

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH-------GNIDQRSRMKILSNFKE 293
           +  ++   IIF N +K   ++  ++ + G ++  I          +D   R +++ +F+ 
Sbjct: 346 ACMSIGQSIIFVNTRKTAFSIAENMRRDGHAISVICGTQTNSGEKMDHEIRDQVMDSFRS 405

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA-------------------ENYIHRIG 334
           G  ++++A+D+ +RG+D+P V  V NFD+P R                    E Y+HRIG
Sbjct: 406 GESKVLIATDVLSRGIDVPQVTLVINFDIPVRFSSTNSIDIVNQTSSVQVENETYLHRIG 465

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
           RTGR G +G +   +    +  I  I+   +  +  ++ DL  L   L+ +
Sbjct: 466 RTGRFGLNGISINFILPHQLSLIQQIQDYYDCNIQLIDKDLEHLEQILKSL 516


>gi|310790707|gb|EFQ26240.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 733

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 130/420 (30%), Positives = 214/420 (50%), Gaps = 37/420 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + + GL  +++  V   GY  P+PIQ   IP+ LQ  D+ G+A TG+GKTA+F+LP+LT
Sbjct: 291 SWEESGLPRQLLNIVDRVGYKDPSPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLT 350

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            ++         +      LIL PTREL  Q+     K+       V  ++GG   E Q 
Sbjct: 351 YIQDLPPLTEINKNDGAYALILAPTRELVQQIETEAHKFADPLGFNVVSIVGGHSLEEQV 410

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY---------- 166
             L RGA++++ TPGR++D   R  L+++    +++DEADRM+D+GF             
Sbjct: 411 HALSRGAEIIVATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEESVNKILDALPV 470

Query: 167 ---------------IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
                          +Q         RQT++++ATM   ++K++  +L+ P  + +    
Sbjct: 471 SNEKPDTDDAENAQLMQKYLGATDRYRQTMMYTATMPPTVEKIARKYLRRPAIVTIGNAG 530

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
              ET+    V   +   KK   LQ++L + D     I+F N K+N   +   +++ G+S
Sbjct: 531 EAVETV-EQRVEFVSGEDKKKKRLQEILGAGDFAPPIIVFVNIKRNCDAVARDVQRMGYS 589

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
              +HG+  Q  R   L++ + G  Q++VA+DLA RG+D+PDV  V NF++    E+Y H
Sbjct: 590 AVTLHGSKTQEQREAALASVRNGQTQVLVATDLAGRGIDVPDVSLVINFNMATNIESYTH 649

Query: 332 RIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
           RIGRTGRAG+ G A T + + D      +++++ K        +S +   L + + AQ  
Sbjct: 650 RIGRTGRAGKSGVAITFLEQSDSDLFYDLKQMLSKSA------ISRVPEELRRHEAAQQK 703


>gi|149182026|ref|ZP_01860512.1| YqfR [Bacillus sp. SG-1]
 gi|148850291|gb|EDL64455.1| YqfR [Bacillus sp. SG-1]
          Length = 434

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 129/409 (31%), Positives = 202/409 (49%), Gaps = 13/409 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P +  A+   G+++PT IQ K IPL+ +     G +QTGTGKT S++LP+L 
Sbjct: 4   QFEQYDFQPFINEAIERLGFIEPTEIQKKMIPLINRGESAIGQSQTGTGKTHSYLLPILN 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + +    V+     I  PTRELA Q+     K      +T    IGG   +    KL+ 
Sbjct: 64  KINRNSQEVQAV---ITAPTRELAQQIYQEILKITNEEEITSRCFIGGTDKQRMIDKLKT 120

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI D    G LL++  ++LV+DEAD MLDMGFI  +  I + +P   + L
Sbjct: 121 QPQIVVGTPGRINDLVKEGALLVHRADMLVVDEADLMLDMGFIFDVDQIAARMPEKLKIL 180

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+ ++L+   + +++NP+   V     +A+ I         + S+    L     S
Sbjct: 181 VFSATIPEKLKPFLKKYMENPQYAHVEPEHISAKNI---KHILLPRKSRNKDDLLYDALS 237

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F N K     +   L  +G  V  IHG++  R R K++   +    Q +VA
Sbjct: 238 SLNPYLAIVFTNTKAKADEVADYLLSKGMKVGRIHGDLSPRERKKMMKQIRALEYQYIVA 297

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+DI  V H+ N+++P   + YIHR GRT RAG  G A T+    D   ++ +E
Sbjct: 298 TDLAARGIDIEGVSHIINYEIPGELDFYIHRTGRTARAGYSGIAVTIYEPSDEDALNQLE 357

Query: 362 KL--IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           K+    +  D + G+   L          + +  +  + I QK+    R
Sbjct: 358 KMGITFENQDLIRGEWKELAD-----RNKRKHRQKTGDEIDQKAKSLVR 401


>gi|302419503|ref|XP_003007582.1| ATP-dependent RNA helicase SUB2 [Verticillium albo-atrum VaMs.102]
 gi|261353233|gb|EEY15661.1| ATP-dependent RNA helicase SUB2 [Verticillium albo-atrum VaMs.102]
          Length = 420

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 125/373 (33%), Gaps = 19/373 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q   IP  L   D+   A++G GKTA FVL  L  
Sbjct: 56  FRDFLLKPELLRAIGDCGFEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLTTLQQ 115

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E     V +                               +  +  I            
Sbjct: 116 VEPVAGEVSVLVMCHTRELAFQIRNEY-----------NRFSKYMPDIKTGVFYGGTPIQ 164

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DV          H   G     N  +         + +  +     +   +   R    
Sbjct: 165 KDVETIKNKDTCPHIIVGTPGRLNALVRDKVLRLGSVRIFVLDECDKMLDQIDMRRDVQE 224

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
                  + Q +              T     +              ++       L   
Sbjct: 225 IFRATPTQKQVMINPTEHYVDEDTKLTLHGLQQ-------YYIKLEEREKNRKLNELLDD 277

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF         L   L +  F   A+H  + Q  R++    FK+   ++ VA+
Sbjct: 278 LQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKDFNKRICVAT 337

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           D+  RG+DI  +    N+D+P  A++Y+HR+GR GR G  G A + V+ + D + + AIE
Sbjct: 338 DVFGRGIDIERINLAINYDLPGDADSYLHRVGRAGRFGTKGLAISFVSTDGDKEVLAAIE 397

Query: 362 KLIEKKVDWLNGD 374
           K  E  +     D
Sbjct: 398 KRFEVALPEFPKD 410


>gi|170726099|ref|YP_001760125.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169811446|gb|ACA86030.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 432

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 130/394 (32%), Positives = 218/394 (55%), Gaps = 16/394 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +LGL P+++  + +  Y+ PT IQ ++IP +L+  D+ G A TG+GKTA+F LP+L  
Sbjct: 15  FDELGLIPELLQRIAELEYLTPTQIQSQSIPHLLEGKDLLGGANTGSGKTAAFALPILQH 74

Query: 63  LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGG--IPFEAQNK 117
           L  G   V     +   +L PTRELA QVA +F+ Y +     + +      +    Q  
Sbjct: 75  LHVGDKPVAKGNMVRALVLVPTRELAKQVAASFKSYAQGLTPKLKVEAVFGGVSVNTQML 134

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GADVL+ TPGR+LD  +   + ++    LV+DEADRML +GF   ++ + +L+P  
Sbjct: 135 ALRGGADVLVATPGRLLDLLSSNAIKLSQASHLVLDEADRMLSLGFAEELEKVLALLPKR 194

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTLLFSAT  +E+++++++ L +P  + + +   +    +   V    + +     L  
Sbjct: 195 KQTLLFSATFPEEVKELTDSLLNSPVELHLESTEESTLVQQVYTVNKNRKTA-----LLA 249

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L ++   +  ++F + K     L   L K G S    H +  Q SR ++L  FK G I 
Sbjct: 250 HLINERNWRQVLVFASAKNTCNRLEQKLAKAGVSAQVFHSDKSQGSRTRVLDGFKSGEIS 309

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+AARG+DI  +  V N+++P    +Y+HRIGR+GRAG  G A +L++ ++ +H 
Sbjct: 310 VLIATDIAARGIDIEKLPVVINYELPRSPSDYMHRIGRSGRAGEAGLALSLISHDEYQHF 369

Query: 358 DAIEK-----LIEKKVDWLNGDLSS-LNPPLEKI 385
             IEK     L+ +++     D  + L+ P  +I
Sbjct: 370 KLIEKKNKIRLVREQIVGFEADEEAPLDCPSREI 403


>gi|315101547|gb|EFT73523.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
          Length = 560

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 138/443 (31%), Positives = 217/443 (48%), Gaps = 9/443 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+   +  A+   G V P  IQ  +IP+ ++  D+ G A+TGTGKT +F + +L 
Sbjct: 50  SFADLGVREDICQALEGVGIVSPFQIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 109

Query: 62  ILEKGRARVR-------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
            +                P+ L++ PTRELA QV+ +           V  + GG+ +E+
Sbjct: 110 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYES 169

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L+ G DV++ TPGR+LD   R  L ++++ I+V+DEAD MLD+GF+P ++N+    
Sbjct: 170 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 229

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P +RQT+LFSATM   +                   + T  T+       Y  +      
Sbjct: 230 PASRQTMLFSATMPAPI-MALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIE 288

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +   +   + ++  IIFC  K+    L   L+ +GF   AIHG++ Q +R K L  F+ G
Sbjct: 289 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 348

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              ++VA+D+AARG+D+  V HV N + P   + Y+HRIGRTGRAG  G A TLV   D+
Sbjct: 349 EATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADV 408

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                I K +  ++       S+       +DI +    +  +P  + +T   RR+  + 
Sbjct: 409 TRWKLINKALNLELSEPVETYSTSPHLYTDLDIPEDAQGQIIDP-EKAATEKKRRQHRHG 467

Query: 415 SQKSHIPLKESEKISKLQQDIQE 437
              SH             +D  +
Sbjct: 468 HDGSHHEKATRRHSRDASKDGDK 490


>gi|146311795|ref|YP_001176869.1| ATP-dependent RNA helicase DbpA [Enterobacter sp. 638]
 gi|145318671|gb|ABP60818.1| ATP-dependent RNA helicase DbpA [Enterobacter sp. 638]
          Length = 457

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 136/373 (36%), Positives = 216/373 (57%), Gaps = 9/373 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY+  TP+Q   +P +L+  DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPAAQLDNLNELGYLAMTPVQAAALPAILEGRDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++ G  + +    L+L PTRELA QVA    +  +    T  L + G  PF AQ   L+
Sbjct: 64  QIDAGLFQTQS---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ ++ LV+DEADRMLDMGF   I  +    P TRQT
Sbjct: 121 HPPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPATRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  +S    QNP  IE+++  +     +  +  +     K    L Q L 
Sbjct: 181 LLFSATWPEAIAAISGRVQQNPATIEIDSVDALPSIEQQFYETSQ----KGKIPLLQKLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN KK+   +C +LE+ G S  A+HG+++QR R + L  F  G+ +++V
Sbjct: 237 SQHQPASCVVFCNTKKDCQAVCEALEEAGQSALALHGDLEQRDRDQTLIRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +L A E+ +  + +
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISLCAPEEAQRANIL 356

Query: 361 EKLIEKKVDWLNG 373
            ++++ K++W++ 
Sbjct: 357 SEMLQLKLNWMSA 369


>gi|332362965|gb|EGJ40754.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK49]
          Length = 447

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 129/451 (28%), Positives = 203/451 (45%), Gaps = 12/451 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-- 118
            +L++    V+     I  P+RELAAQ+     +        + +       +   +   
Sbjct: 61  QMLDEEADSVQAV---ITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQIGK 117

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTI---ENWLLSTKGRDKNAQIY 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLRGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             +EK+  K +  +  D        ++   A    +R+            ++KK     K
Sbjct: 355 RELEKMGIKFIPKMIKD-DEFQDTYDRDRRANREKSREKLDTEMLGLVKKKKKKIKPGYK 413

Query: 418 SHIPL--KESEKISKLQQDIQENDADSLGFR 446
             I     E  + +K  ++     A+    R
Sbjct: 414 KKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|50419843|ref|XP_458454.1| DEHA2C17534p [Debaryomyces hansenii CBS767]
 gi|74659385|sp|Q6BTL5|DRS1_DEBHA RecName: Full=ATP-dependent RNA helicase DRS1
 gi|49654120|emb|CAG86536.1| DEHA2C17534p [Debaryomyces hansenii]
          Length = 771

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 140/462 (30%), Positives = 224/462 (48%), Gaps = 29/462 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L LS  V+  +   GY KP+PIQ   IP+ L   D+   A TG+GKTA++++P++ 
Sbjct: 259 TFQSLQLSRPVLKGLSQLGYTKPSPIQSACIPIALLGKDIVAGAVTGSGKTAAYMIPIIE 318

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L    A++   R ++L PTRELA QV D  +K G+  N     L +GG+    Q ++L+
Sbjct: 319 RLLYKPAKISSTRVIVLAPTRELAIQVCDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLK 378

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNI-EILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D++I TPGR++DH         +  E+LVIDEADRMLD GF   +  I SL+P  ++
Sbjct: 379 TRPDIVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQAELTEILSLIPRHKR 438

Query: 180 TLLFS--ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
             L       T     +  +  +  + +     S+  + ++         + K   L Q 
Sbjct: 439 QTLLYSATMNTKIQDLIQLSLQKPVRVMIDPPKSAAIKLVQEFVRIRKRDHLKPALLFQL 498

Query: 238 LLQSQDTMKNGIIFCNQKKN-VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +     + +N I+    +K     L   L   G  V  +HG++ Q  R+  +++FK  T+
Sbjct: 499 IKSVDPSQQNRIVVFVARKESAHKLRIILGLLGMRVSELHGSLTQEQRLASVNDFKNLTV 558

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK--EDI 354
            +++ +DLAARGLDIP +  V N+D+P   E Y+HR+GRT RAGR GK+ T V +  +D 
Sbjct: 559 PVLICTDLAARGLDIPKIEIVINYDMPKTHEIYLHRVGRTARAGREGKSITFVGESTQDR 618

Query: 355 KHIDAIEKLIE-------------------KKVDWLNGDLSSLNPPLEK-IDIAQHNHAR 394
             +    K I                    K+V+ LN  + S    +E+ +D  +     
Sbjct: 619 AIVKDAIKSISEEQARNSKQGKAVSRNVDWKEVEELNKIVESKATVIEEVLDEEKQAKEM 678

Query: 395 KNNPIP-QKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDI 435
            +  +   K+T   + +K   S +      ESEK  K Q ++
Sbjct: 679 LHAEMELSKATNMIKHEKEIQS-RPRRTWFESEKDKKHQTEV 719


>gi|50310213|ref|XP_455126.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660335|sp|Q6CLR3|DED1_KLULA RecName: Full=ATP-dependent RNA helicase DED1
 gi|49644262|emb|CAG97833.1| KLLA0F01034p [Kluyveromyces lactis]
          Length = 627

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 132/393 (33%), Positives = 200/393 (50%), Gaps = 19/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
           +F    L P ++  +  A + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P   
Sbjct: 160 EFHSPPLDPLLLDNIKLARFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLS 219

Query: 59  ---------MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                              +   P  +IL PTRELA Q+ D  +K+     +   ++ GG
Sbjct: 220 ESFSSGPASTPEAAGNSYIKKVYPTAVILAPTRELATQIYDEAKKFTYRSWVKPMVVYGG 279

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
              + Q K++  G ++L+ TPGR+ D   R  + + N++ LV+DEADRMLDMGF P I+ 
Sbjct: 280 ASIDNQIKQMRYGCNLLVATPGRLTDLLERRYISLANVKYLVLDEADRMLDMGFEPQIRR 339

Query: 170 IT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I           RQTL+FSAT   E+Q ++ +FL++   + V    ST+E I    +   
Sbjct: 340 IVEGSDMPSVDNRQTLMFSATFPSEIQHLASDFLKDYVFLSVGRVGSTSENITQKILYVE 399

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
                        L +       +IF   K+   +L   L  +GF   AIHG+  Q  R 
Sbjct: 400 DFDK---NDTLLDLLAASNEGLTLIFVETKRAADSLTDFLIMEGFKATAIHGDRTQGERE 456

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + LS FK G   ++VA+ +AARGLDIP+V HV NFD+PN  ++Y+HRIGRTGRAG  G A
Sbjct: 457 RALSAFKTGRATILVATAVAARGLDIPNVTHVINFDLPNDIDDYVHRIGRTGRAGNTGVA 516

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            T   + +      +  L+ +    +   L+++
Sbjct: 517 TTFFNRGNKNVAKELVSLLSEANQEVPSFLTTI 549


>gi|322833585|ref|YP_004213612.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
 gi|321168786|gb|ADW74485.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
          Length = 460

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 122/370 (32%), Positives = 205/370 (55%), Gaps = 8/370 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L L  + +  + + GY + TPIQ  ++P +L   DV   A+TG+GKTA+F + +L 
Sbjct: 5   SFSALTLPVEQLSNLNELGYTEMTPIQEASLPAILLGQDVRAKAKTGSGKTAAFGIGLLN 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            +   +   +    L+L PTRELA QV+    +  +       L + G      Q + L 
Sbjct: 65  SITVSQFVAQA---LVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQAIGPQLESLV 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRI +H  +G L ++ +++LV+DEADRMLDMGF   I+++ S  P  RQT
Sbjct: 122 HPPHIVVGTPGRIQEHLRKGTLKLDELKVLVLDEADRMLDMGFSEDIEDVVSYTPQDRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D ++++S  F    +R  +       + I             +   L   + 
Sbjct: 182 LLFSATYPDGIERISSKF----QRQPLKVEIEGEDDIADIRQIFIEADKHQRLSLLAAVL 237

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q    + ++FCN K++  ++C  L+ +G S  A++G+++QR R ++L  F  G+ +++V
Sbjct: 238 YQYQPTSCVVFCNTKRDCQDVCDDLKAKGISALALNGDLEQRDRDRVLVRFSNGSCRVLV 297

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +G V N+++    E ++HR+GRTGRAG  G A +LV  +++  + A+
Sbjct: 298 ATDVAARGLDIKQLGLVINYELSFDPEVHVHRVGRTGRAGTSGLAVSLVTPQEMPRVTAL 357

Query: 361 EKLIEKKVDW 370
           E    ++  W
Sbjct: 358 EDYTRQRFTW 367


>gi|296102188|ref|YP_003612334.1| ATP-dependent RNA helicase DbpA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056647|gb|ADF61385.1| ATP-dependent RNA helicase DbpA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 457

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 133/383 (34%), Positives = 213/383 (55%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY+  TP+Q   +P +L+  DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPAAQLDNLNELGYLTMTPVQAAALPAILEGRDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF AQ   L+
Sbjct: 64  HIDATLLQTQS---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +  + ++ ++ LV+DEADRMLDMGF   I  +    P  RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKSTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPEDRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D +  +S    +NP  IE+++  +     +  F  +          L Q L 
Sbjct: 181 LLFSATWPDAIAAISGRVQKNPLTIEIDSVDALPAIEQQFFETSQQGK----IPLLQKLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN KK+   +C +L   G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SQHQPASCVVFCNTKKDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +  A E+ +  + +
Sbjct: 297 ATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIL 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
            ++++ K++W+N   +    PLE
Sbjct: 357 SEMLQIKLNWVNTPGNVRVVPLE 379


>gi|281178534|dbj|BAI54864.1| ATP-dependent RNA helicase [Escherichia coli SE15]
          Length = 457

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 206/383 (53%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  +   GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNGLGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK   ++C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKECQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W     +S   PLE
Sbjct: 357 SDMLQIKLNWQTPPANSSIVPLE 379


>gi|196016401|ref|XP_002118053.1| hypothetical protein TRIADDRAFT_33552 [Trichoplax adhaerens]
 gi|190579356|gb|EDV19453.1| hypothetical protein TRIADDRAFT_33552 [Trichoplax adhaerens]
          Length = 524

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 142/420 (33%), Positives = 213/420 (50%), Gaps = 24/420 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F    L   ++  +    Y  PTP+Q   I ++  + D+   AQTG+GKTA+F++P+  
Sbjct: 107 EFNQCDLGEIILGNIELCQYNIPTPVQKYAISIITGKRDLMACAQTGSGKTAAFLIPILS 166

Query: 60  ---------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                          G  R + P  LIL PTRELAAQ+ +  +K+         ++ GG 
Sbjct: 167 LIFNGGPVVKPQSYYGSRRKQFPLALILAPTRELAAQIYEEAKKFTYRAVARPCVVYGGA 226

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ-- 168
            F  Q K L+RG  +L+ TPGR++D   RG + ++  + LV+DEADRMLDMGF P I+  
Sbjct: 227 DFGYQVKDLDRGCHLLVATPGRLVDMLERGMIGLDYCKYLVLDEADRMLDMGFEPQIRRI 286

Query: 169 --NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
               T      RQT++FSAT   E+Q ++ +FL +   + V    ST+E I       + 
Sbjct: 287 VEQDTMPPSGQRQTMMFSATFPKEIQVLARDFLDDYIFLAVGRVGSTSENIIQKM--VWV 344

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           +   K A L +LL S +     ++F   KK   +L   L + G+   AIHG+  QR R  
Sbjct: 345 EEDDKRAYLLELLNSTEPTSLSLVFVETKKGADSLQEFLVRMGYYSTAIHGDRSQRDRED 404

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L  F+ G   ++VA+ +AARGLDIP+V HV NFD+P+  E Y+HRIGRTGR G  G A 
Sbjct: 405 ALRAFRAGVRPILVATAVAARGLDIPNVAHVINFDLPSDIEEYVHRIGRTGRVGNVGTAT 464

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
           +   +++      +       VD L     S+   L+ + +     +       + ST F
Sbjct: 465 SFFNEKNKNVAKDL-------VDLLLEAKQSVPRWLDDVAVEMRYQSNNKRGGRRYSTNF 517


>gi|90081060|dbj|BAE90010.1| unnamed protein product [Macaca fascicularis]
          Length = 407

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 195/378 (51%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L   ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 34  NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF-EAQNKKLE 120
            LE      +    L+L PTRELA Q+       G     T    IGG        K   
Sbjct: 94  QLEIEFKETQA---LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQA 150

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I  I   +  + Q 
Sbjct: 151 EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQV 210

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI       T E I+  ++    +  K   L      
Sbjct: 211 VLLSATMPTDVLEVTKKFMRDPIRILXKKEELTLEGIKQFYINVEREEWKLDTLCDL--Y 268

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 269 ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLI 328

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V +ED + +  I
Sbjct: 329 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI 388

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      V+ +  +++ L
Sbjct: 389 ETFYNTTVEEMPMNVADL 406


>gi|71747626|ref|XP_822868.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70832536|gb|EAN78040.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
          Length = 604

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 99/383 (25%), Positives = 160/383 (41%), Gaps = 5/383 (1%)

Query: 2   DFADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           D+  L L+P +V A+  D  + + T IQ + IP  L   D+   A+TG+GKT +F++P++
Sbjct: 110 DYRSLKLNPHIVTALENDFKFQELTGIQGRCIPAALAGRDLLAEAKTGSGKTLAFLIPIV 169

Query: 61  TILEKGRARVRMPRTLI----LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            I+ +   R R     I              V     K+       +  + G    +   
Sbjct: 170 EIITRVGFRQRSGTAAIIIGPTRELCLQIEGVLLKLLKHFNGSVTFLCCIGGISRKQEAF 229

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K +     V+      +         L  N+ +L +DEADR+LD GF   ++ I SL+P 
Sbjct: 230 KLVSGMMVVMATPGRLLDHLKLTTDWLTKNLLVLAVDEADRVLDNGFEDDMREIVSLLPR 289

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT LFSAT T  +++++      P             T++          S++  L+ 
Sbjct: 290 QRQTFLFSATQTTRVEQLARVSFYRPPLFISMKRKEDKATVDTLEQGYVICPSQQRLLVL 349

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                ++  K  I+F + +  V   C           A HG   Q  R      F     
Sbjct: 350 YHFVRRNLKKKVIVFFSSRNAVSFHCELFNYIDVPCVAFHGKQKQHQRSATYMQFCNAPS 409

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++  +D+AARGLDIP V  +  FD P+    Y+HR+GRT RAGR G A   +  ++   
Sbjct: 410 GVLFTTDVAARGLDIPQVDWIVQFDPPDDPVKYVHRVGRTARAGRTGNALMFLLPQEKLF 469

Query: 357 IDAIEKLIEKKVDWLNGDLSSLN 379
           +  +       V     DL+ + 
Sbjct: 470 LKYLHDDAHVSVSEYTFDLNKVK 492


>gi|312376077|gb|EFR23272.1| hypothetical protein AND_13185 [Anopheles darlingi]
          Length = 621

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 113/392 (28%), Positives = 201/392 (51%), Gaps = 9/392 (2%)

Query: 2   DFADL--GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           +F  L   +S   + A+ + G+ K T IQ K+IP +L+  D+ G A+TG+GKT +F++P 
Sbjct: 126 EFKSLEGKVSDNTLRAIAEMGFTKMTEIQAKSIPPLLEGRDLVGSAKTGSGKTLAFLIPA 185

Query: 60  LTILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K R + R     +I+ PTRELA Q+    ++   +++ T  LL+GG     +N+K
Sbjct: 186 VELIHKLRFKPRNGAGAIIISPTRELAMQIFGVLKELMAHHHQTYGLLMGGASRHTENEK 245

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G ++++ TPGR +    +    L  N++ L+IDE DR+L++GF   ++ I S++P  
Sbjct: 246 LGKGLNIIVATPGRLLDHLKSTPNFLYKNLQCLIIDECDRILEIGFEEDLKQIISILPKK 305

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT +  L ++    L++         + T  T+           S+K  L+  
Sbjct: 306 RQTLLFSATQSSRLDELGRLALKSEPIYVGVDDNKTEATVTGLEQGYIVCPSEKRLLVLF 365

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V             V +IHG   Q  R  +   F      
Sbjct: 366 TFLKKNRKKKVMVFFSSCLSVKFHHELFNYIDLPVQSIHGKQKQAKRTSVFFQFCNAESG 425

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKH 356
           +++ +D+AARGLDIP V  +  +D PN  + YIHR+GRT R     G A  ++  E++  
Sbjct: 426 ILLCTDVAARGLDIPAVDWIVQYDPPNDTKEYIHRVGRTARGENLCGHALLILRPEELGF 485

Query: 357 IDAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
           +  +++  +  ++        ++ +   LE +
Sbjct: 486 LKYLKQA-KVPLNEFEFSWSKIADIQLQLENL 516


>gi|301764042|ref|XP_002917443.1| PREDICTED: probable ATP-dependent RNA helicase DDX10-like
           [Ailuropoda melanoleuca]
          Length = 926

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 117/389 (30%), Positives = 189/389 (48%), Gaps = 8/389 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P +  
Sbjct: 127 FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 186

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +             LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +++  
Sbjct: 187 LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINN 246

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +            N+++LV+DEADR+LDMGF   +  I   +P  RQTL
Sbjct: 247 INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTL 306

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L+NP+ + V+   +   T             ++   +      
Sbjct: 307 LFSATQTKSVKDLARLSLKNPEYVWVHE-KAKYSTPATLEQNYIVCELQQKISVLYSFLR 365

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA--IHGNIDQRSRMKILSNFKEGTIQLM 299
               K  I+F +  K V  L     +    +    +HG   Q  RM++ + F      ++
Sbjct: 366 SHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVL 425

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   + K +  
Sbjct: 426 FATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEKGM-- 483

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKID 386
           +++L++KKV    +  +   L    +K++
Sbjct: 484 VQQLLQKKVPVKEIKINPEKLIDVQKKLE 512


>gi|281345859|gb|EFB21443.1| hypothetical protein PANDA_005663 [Ailuropoda melanoleuca]
          Length = 752

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 117/389 (30%), Positives = 189/389 (48%), Gaps = 8/389 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P +  
Sbjct: 75  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 134

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +             LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +++  
Sbjct: 135 LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINN 194

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +            N+++LV+DEADR+LDMGF   +  I   +P  RQTL
Sbjct: 195 INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTL 254

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L+NP+ + V+   +   T             ++   +      
Sbjct: 255 LFSATQTKSVKDLARLSLKNPEYVWVHE-KAKYSTPATLEQNYIVCELQQKISVLYSFLR 313

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA--IHGNIDQRSRMKILSNFKEGTIQLM 299
               K  I+F +  K V  L     +    +    +HG   Q  RM++ + F      ++
Sbjct: 314 SHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVL 373

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   + K +  
Sbjct: 374 FATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEKGM-- 431

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKID 386
           +++L++KKV    +  +   L    +K++
Sbjct: 432 VQQLLQKKVPVKEIKINPEKLIDVQKKLE 460


>gi|258563984|ref|XP_002582737.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237908244|gb|EEP82645.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 538

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 126/433 (29%), Positives = 201/433 (46%), Gaps = 20/433 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL+P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F  P+L 
Sbjct: 109 SFTSLGLAPWLVGSLSAMAIRRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAFAAPILH 168

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                         ++L PTRELA Q+ + F+      +L   L+ GG     Q   L  
Sbjct: 169 RW---SEDPFGIFAVVLTPTRELALQIFEQFKAISAPQSLKPVLITGGSEMRPQAIALST 225

Query: 122 GADVLICTPGRILDHFNRGKLLMNN----IEILVIDEADRMLDMG---FIPYIQNITSLV 174
              V+I TPGR+ DH              + ++V DEADR+L  G    +P ++   S +
Sbjct: 226 RPHVVIATPGRLADHIKTSGEDTIFGLSRVRMVVFDEADRLLASGPGSMVPDVETCLSAL 285

Query: 175 PFTRQTLL--FSATMTDEL-----QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           P +       F+AT+T E+         ++             ++T              
Sbjct: 286 PPSTSRQTLLFTATLTPEVRALKSMPRPKDRPPVFITEISTENNATIPPTLKQCYLQVPM 345

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             ++  L   L   ++  K  IIFCN+ K    L   L + G  V ++H  + Q  R   
Sbjct: 346 THREAFLHVLLSTEENGSKPAIIFCNRTKTADLLDRLLRRLGHRVTSLHSLLPQSERTSN 405

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L+ F+    +L+VA+D+AARGLDIP V  V NFDVP   ++YIHR+GRT RAGR G+A T
Sbjct: 406 LARFRASAARLLVATDVAARGLDIPSVSLVVNFDVPRNPDDYIHRVGRTARAGREGEAVT 465

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           LV + D++ + AIE  + +++     +  S+   + + ++ +     K   + +   G D
Sbjct: 466 LVGQRDVQLVLAIEARVGRQMVVWEEEGVSIEGRIVRGNVLKEVGGAKREAVGEIEEGRD 525

Query: 408 ---RRKKNYSSQK 417
              RR +     +
Sbjct: 526 VLGRRMRKLKKAR 538


>gi|326914387|ref|XP_003203507.1| PREDICTED: probable ATP-dependent RNA helicase DDX10-like, partial
           [Meleagris gallopavo]
          Length = 658

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 121/392 (30%), Positives = 190/392 (48%), Gaps = 11/392 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P +  
Sbjct: 75  FSDFPLSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALEL 134

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +             LI+ PTRELA Q      K GKN++ +  L+IGG   + +++++  
Sbjct: 135 LYRLQWTSADGLGVLIISPTRELAFQTFKVLRKVGKNHDFSAGLIIGGKDLKEESERIHH 194

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +           +++++L++DEADR+LDMGF   +  I   +P  RQTL
Sbjct: 195 INMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENLPKKRQTL 254

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L++P+ + V+   +   T             +    +      
Sbjct: 255 LFSATQTKSVKDLARLSLKDPEYVWVHE-KAKFSTPATLDQNYIVCELQHKINVLYSFLR 313

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGF--SVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               K  I+F    K V  L     K      V A+HG   Q  RM++ + F      ++
Sbjct: 314 SHLKKKSIVFFASCKEVQYLFRVFCKLQPGLPVLALHGKQQQMKRMEVYTCFVRKKAAVL 373

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V  FD P  A  YIHR+GRT R    G+A  ++   + K +  
Sbjct: 374 FATDIAARGLDFPAVNWVIQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEKGM-- 431

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
           +E+L ++KV     +   +NP  EKI   Q  
Sbjct: 432 VEQLAQRKV---PVNEIKINP--EKITDIQKR 458


>gi|313677314|ref|YP_004055310.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312944012|gb|ADR23202.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 380

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 125/380 (32%), Positives = 204/380 (53%), Gaps = 5/380 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA   L   +   +       P PIQ + IPL +   DV GIA+TG+GKT ++VLP+L
Sbjct: 1   MSFASFNLPIALSNVLSKQNIKSPFPIQQEVIPLAMDGKDVLGIAKTGSGKTLAYVLPIL 60

Query: 61  TI-LEKGRARVRMPRTLILEPTRELAAQVADNFE-KYGKNYNLTVALLIGGIPFEAQNKK 118
           T       AR R P+ LIL PTREL+ QV + F+     N N +  + + G        +
Sbjct: 61  TKLNFFPEARNRQPQVLILVPTRELSQQVLEVFKLFVDTNRNHSKTMAVFGGTSVNPQMQ 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 +L+ TPGR+LD  +   L ++++++LVIDEAD++L+  F   +  I  ++P T 
Sbjct: 121 GMGEVKILVATPGRLLDLVSSNALKLSSLQLLVIDEADKILNANFKKELDEILKIIPGTA 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT++ ++QK+ + +L  P  I +       E I+    A  A        L + 
Sbjct: 181 QKLLFSATLSPDVQKLKQLYLNKPSIIHIEQKEEKVELIKQSAYAVEANQK---GPLLRY 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L     +K  ++F +   +   +   L K G    A+H    Q +R + LS+F++G + +
Sbjct: 238 LIKSKDLKQVMVFTSSITSANKVADKLRKNGIDALAVHSKKSQHARNQALSDFRDGKVNV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V +DL +RG+DI  +  V N+++P   ++++HRIGRTGRA   G+A +L++KE+  H +
Sbjct: 298 LVTTDLLSRGIDIEYLPFVINYELPRSPKDFVHRIGRTGRAKHAGEAISLISKEESHHFE 357

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            I+K I  K+     +  +L
Sbjct: 358 VIQKKINYKITLTEIENINL 377


>gi|119331088|ref|NP_001073193.1| probable ATP-dependent RNA helicase DDX10 [Gallus gallus]
 gi|82197778|sp|Q5ZJF6|DDX10_CHICK RecName: Full=Probable ATP-dependent RNA helicase DDX10; AltName:
           Full=DEAD box protein 10
 gi|53133616|emb|CAG32137.1| hypothetical protein RCJMB04_18j24 [Gallus gallus]
          Length = 875

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 121/392 (30%), Positives = 190/392 (48%), Gaps = 11/392 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P +  
Sbjct: 75  FSDFPLSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALEL 134

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +             LI+ PTRELA Q      K GKN++ +  L+IGG   + +++++  
Sbjct: 135 LYRLQWTSADGLGVLIISPTRELAFQTFKVLRKVGKNHDFSAGLIIGGKDLKEESERIHH 194

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +           +++++L++DEADR+LDMGF   +  I   +P  RQTL
Sbjct: 195 INMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENLPKKRQTL 254

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L++P+ + V+   +   T             +    +      
Sbjct: 255 LFSATQTKSVKDLARLSLKDPEYVWVHE-KAKFSTPATLDQNYIVCELQHKINVLYSFLR 313

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGF--SVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               K  I+F    K V  L     K      V A+HG   Q  RM++ + F      ++
Sbjct: 314 SHLKKKSIVFFASCKEVQYLFRVFCKLQPGLPVLALHGKQQQMKRMEVYTCFVRKKAAVL 373

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V  FD P  A  YIHR+GRT R    G+A  ++   + K +  
Sbjct: 374 FATDIAARGLDFPAVNWVIQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEKGM-- 431

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
           +E+L ++KV     +   +NP  EKI   Q  
Sbjct: 432 VEQLAQRKV---PVNEIKINP--EKITDIQKR 458


>gi|325189223|emb|CCA23746.1| DEAD box helicase putative [Albugo laibachii Nc14]
          Length = 809

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 133/430 (30%), Positives = 216/430 (50%), Gaps = 54/430 (12%)

Query: 2   DFADLGLSPK-VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++ +  L P+ +  A+ +  + +P+PIQ++ IP+ L + D+ GIA+TG+GKTA+F++P++
Sbjct: 350 NWKEASLLPEALFKAIQEMRFERPSPIQMQAIPIGLAKRDIIGIAETGSGKTAAFLIPII 409

Query: 61  TILEK------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN---------LTVAL 105
             L         R   + P  LI+ PTRELA Q+     K  K+           +    
Sbjct: 410 AYLYHLPAVMLERTGEQGPLALIMAPTRELALQIEQEAIKLCKHTQVGVVGSQNRIRTLS 469

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           ++GG   E Q  KL +G D++I TPGR++D      L++N    +V+DEADRM+DMGF P
Sbjct: 470 VVGGQSIEDQAFKLRQGVDIIIGTPGRLMDCMESHYLVLNQCNYVVLDEADRMIDMGFEP 529

Query: 166 Y------------------------IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQN 201
                                     +   +     R T++FSATM  E++++++ +L++
Sbjct: 530 QVVAVLDNMGSLLKSENEEEMEKQLERANNAQEFRYRVTMMFSATMPTEVERLAKTYLRH 589

Query: 202 PKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL--------------QSQDTMKN 247
           P  I++    S         V       KK  L   L               +     + 
Sbjct: 590 PAIIKIGDEDSGKNKRIEQRVVFLNSGKKKLRLQHLLHETLSSSGQVRISRKEKVVDGQK 649

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            ++F N KK    L   L ++GF    +HG   Q  R + L  F+EG   ++VA+D+A R
Sbjct: 650 VMVFVNIKKECDVLGKYLAQEGFRTTILHGGKSQEQREESLRGFREGFCDVLVATDVAGR 709

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           GLDIPDV HV N+D+P++ ENY HRIGRTGRAG+ G A + +  ED + +  +++ +   
Sbjct: 710 GLDIPDVTHVVNYDLPSKIENYCHRIGRTGRAGKEGVAISFLTNEDEEIMYDLKQYLIST 769

Query: 368 VDWLNGDLSS 377
              +  +L+S
Sbjct: 770 NMPVPQELAS 779


>gi|54024485|ref|YP_118727.1| putative RNA helicase [Nocardia farcinica IFM 10152]
 gi|54015993|dbj|BAD57363.1| putative RNA helicase [Nocardia farcinica IFM 10152]
          Length = 518

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 135/390 (34%), Positives = 203/390 (52%), Gaps = 9/390 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+LGL   +V A+   G   P PIQ  T+P  L   DV G   TG+GKT +F LPML
Sbjct: 30  VTFAELGLPAVLVQALRRNGIDAPFPIQAATVPDALAGKDVLGRGPTGSGKTLAFGLPML 89

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L    A  R PR L+L PTRELAAQ+    ++      L VA ++GG P + Q  +L 
Sbjct: 90  VRLAGNAAAPRRPRGLVLVPTRELAAQIERALDEPALALGLRVASVVGGAPIKRQADRLA 149

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+LI TPGR+ D   +G   ++++ I  +DEAD M DMGF+P +  +    P   Q 
Sbjct: 150 RGVDLLIATPGRLSDLIAQGAAALDDVSITALDEADHMADMGFLPQVTRLLDRTPADGQR 209

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  E+ K+ + +L+NP       PS++  T+ H  +       +          
Sbjct: 210 LLFSATLDGEVDKLVKRYLRNPVTHSTAPPSASVATMSHHLLYVRKADKRAVIAEIA--- 266

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K     L   L   G +  A+HG   Q +R + L+ F +G++ ++V
Sbjct: 267 --AREGLTILFVRTKHGADRLAKQLRAAGIAAGALHGGKAQNNRTRTLAAFADGSVPVLV 324

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+ +  +  V + D P   + Y+HR GRT RAG  G   TLV +++      +
Sbjct: 325 TTDVAARGIHVDGISLVVHADPPAEPKAYLHRAGRTARAGEDGVVVTLVTEDERA---DV 381

Query: 361 EKLIEKK-VDWLNGDLSSLNPPLEKIDIAQ 389
           EK+  K  VD +  +++  +P L +I  A+
Sbjct: 382 EKMTRKAGVDVVGVNVTPGHPALREITGAR 411


>gi|67537466|ref|XP_662507.1| hypothetical protein AN4903.2 [Aspergillus nidulans FGSC A4]
 gi|74657196|sp|Q5B3H7|DBP8_EMENI RecName: Full=ATP-dependent RNA helicase dbp8
 gi|40741791|gb|EAA60981.1| hypothetical protein AN4903.2 [Aspergillus nidulans FGSC A4]
 gi|259482230|tpe|CBF76513.1| TPA: ATP-dependent RNA helicase dbp8 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5B3H7] [Aspergillus
           nidulans FGSC A4]
          Length = 525

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 117/431 (27%), Positives = 188/431 (43%), Gaps = 19/431 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L ++P +V ++      KPT IQ   IP +L+  D  G ++TG+GKT +F +P+L 
Sbjct: 96  SFKALNVAPWLVGSLTTMAVRKPTAIQRACIPEILKGRDCIGGSRTGSGKTIAFSVPILQ 155

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +          +IL PTRELA Q+ +  +      ++   L+ GG    +Q  +L  
Sbjct: 156 KWAE---DPFGIFAVILTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRSQAIELAG 212

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+ DH N            V        D    P   ++   V      L
Sbjct: 213 RPHVVVATPGRLADHINTSGTDTVAGLKRVRMVVLDEADRLLSPGPGSMLPDVETCLSFL 272

Query: 182 L---------FSATMTDEL-----QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
                     F+AT+T E+        +                 T              
Sbjct: 273 PGPSQRQTLLFTATLTPEVRALKSMPQTPGKPPIFVTEISTEAKDTVPPTLRTTYVQVPL 332

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             ++  L   L    +  K+ I+F N  K+   L   L   G  V ++H  + Q  R   
Sbjct: 333 THREAFLHVLLSTESNITKSAIVFTNTTKSADLLERLLRSLGHRVTSLHSLLPQSERNSN 392

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L+ F+    +++VA+D+A+RGLDIP V  V NF+VP   ++Y+HR+GRT RAGR G+A T
Sbjct: 393 LARFRASAARVLVATDVASRGLDIPSVSLVVNFEVPRNPDDYVHRVGRTARAGRTGEAVT 452

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           LV + D++ + AIE+ I +K+     +  +L   + K  + +   A K   + +   G D
Sbjct: 453 LVGQRDVQLVLAIEERIGRKMVEYEEEGVNLEARVAKGSLLKEVGAAKREAMVEIDEGRD 512

Query: 408 --RRKKNYSSQ 416
              RK+N   +
Sbjct: 513 VLGRKRNKLKK 523


>gi|222617461|gb|EEE53593.1| hypothetical protein OsJ_36838 [Oryza sativa Japonica Group]
          Length = 676

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 120/370 (32%), Positives = 200/370 (54%), Gaps = 1/370 (0%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
           A LG+SPK+V  +   G  K  PIQ   +   +Q  D+ G A+TGTGKT +F +P+L  +
Sbjct: 149 AKLGISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAI 208

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            +   +    +  +                ++  + N+    + GG P   Q ++L  G 
Sbjct: 209 IRHNEKNSPGKFPLAIVLAPTRELAKQVEREFSDSSNVETICVYGGTPISQQIRQLNYGV 268

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
           DV+I TPGR++D   RG L ++ +  +V+DEAD+ML +GF   ++ I   VP  RQTL+F
Sbjct: 269 DVVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMF 328

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM   +Q++++ +L+NP  I++               +  ++   K A+L +L++   
Sbjct: 329 SATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEHA 388

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
                I+F   K++   L ++   + F   A+HG+I Q  R + L  F+EG   +++A+D
Sbjct: 389 KGGKCIVFTQTKRDADRLSYT-MGRSFQCQALHGDITQAQRERTLKGFREGHFNILIATD 447

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARGLDIP+V  V +F++PN +E ++HR GRTGRAG+ GKA  + + +  + I  +E  
Sbjct: 448 VAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSRAIRMVEND 507

Query: 364 IEKKVDWLNG 373
           +  K   L  
Sbjct: 508 VGCKFTELPK 517


>gi|122227760|sp|Q0ILZ4|RH9_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 9
          Length = 628

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 120/370 (32%), Positives = 200/370 (54%), Gaps = 1/370 (0%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
           A LG+SPK+V  +   G  K  PIQ   +   +Q  D+ G A+TGTGKT +F +P+L  +
Sbjct: 101 AKLGISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAI 160

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            +   +    +  +                ++  + N+    + GG P   Q ++L  G 
Sbjct: 161 IRHNEKNSPGKFPLAIVLAPTRELAKQVEREFSDSSNVETICVYGGTPISQQIRQLNYGV 220

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
           DV+I TPGR++D   RG L ++ +  +V+DEAD+ML +GF   ++ I   VP  RQTL+F
Sbjct: 221 DVVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMF 280

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM   +Q++++ +L+NP  I++               +  ++   K A+L +L++   
Sbjct: 281 SATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEHA 340

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
                I+F   K++   L ++   + F   A+HG+I Q  R + L  F+EG   +++A+D
Sbjct: 341 KGGKCIVFTQTKRDADRLSYT-MGRSFQCQALHGDITQAQRERTLKGFREGHFNILIATD 399

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARGLDIP+V  V +F++PN +E ++HR GRTGRAG+ GKA  + + +  + I  +E  
Sbjct: 400 VAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSRAIRMVEND 459

Query: 364 IEKKVDWLNG 373
           +  K   L  
Sbjct: 460 VGCKFTELPK 469


>gi|82706116|ref|XP_727247.1| ATP-dependent RNA helicase Has1 [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23483000|gb|EAA18812.1| probable ATP-dependent RNA helicase has1 [Plasmodium yoelii yoelii]
          Length = 649

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 119/388 (30%), Positives = 185/388 (47%), Gaps = 7/388 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F DL +   +   + +  ++  T IQ K IP  L   D+ G A+TG+GKT +F++P + 
Sbjct: 228 KFEDLDICDALKKGLKELNFITLTEIQSKCIPHFLNGKDILGAAKTGSGKTLAFLVPSIH 287

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +             LI+ PTREL  Q+        K    T  ++IGG+    + KK  
Sbjct: 288 ILYNIKFLPKNGTGVLIISPTRELCLQIYQVCTDLCKYIPQTNGIIIGGVSRNEEKKKFI 347

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEIL-VIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            G ++LI TPGR+LDH    K       +  +IDEADR+L +GF   I  I   +P  RQ
Sbjct: 348 HGINILIATPGRLLDHMQNTKEFNYKNLVCLIIDEADRLLQIGFEEEINLIVKRLPKKRQ 407

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT T +++ +    LQ P  IEV T  +T E +             K  LL    
Sbjct: 408 TALFSATQTTKVESLIRLSLQKPIFIEVTTKIATVERL---QQGYALVDEDKRFLLLFTF 464

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++T K  ++F N   +V      L         IHG   Q  R+K  + F      ++
Sbjct: 465 LKRNTSKKIMVFFNNCMSVQFYNDLLNYIDIPTFCIHGKKKQNQRLKSFNEFSAAKNAIL 524

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH-GKAFTLVAKEDIKHID 358
           + +++AARGLDIP+V ++  +D P+ ++ YIHR+GRT R     G A   + K ++K ++
Sbjct: 525 LCTNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCRGNDSAGSAIIFLMKHELKFLN 584

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKID 386
            + K     V+  + D   L     +++
Sbjct: 585 YL-KFYNIPVNQFSYDQKKLINIQSQME 611


>gi|188590818|ref|YP_001795418.1| ATP-dependent RNA helicase dbpa [Cupriavidus taiwanensis LMG 19424]
 gi|170937712|emb|CAP62696.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Cupriavidus
           taiwanensis LMG 19424]
          Length = 469

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 138/404 (34%), Positives = 201/404 (49%), Gaps = 15/404 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L LSP ++  +   GY + TPIQ  ++P+ L   D+   A+TG+GKTA+F L +L  
Sbjct: 14  FSALPLSPAMLATLAQLGYDEMTPIQAASLPITLAGQDLVAQAKTGSGKTAAFGLALLHR 73

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    R    + ++L PTRELA QV     +  +       L +  G P   Q   L  
Sbjct: 74  LDP---RRFDVQAMVLCPTRELADQVTQEIRRLARAEENVKVLTLCGGSPMRPQVDSLIH 130

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRILDH +RG L +  I  LV+DEADRMLDMGF   I  + S  P  RQTL
Sbjct: 131 GAHIVVGTPGRILDHIDRGSLDLAAINTLVLDEADRMLDMGFFDDIAYVASRCPRDRQTL 190

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    + K+S  F     R   +                Y     +       L  
Sbjct: 191 LFSATYPPGIDKLSHRF----LRNPQSLKLEATHDNTTIRQRFYEVEESERLNAVGRLLD 246

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FCN K    +L   L  QG+   A+HG ++QR R ++L  F   +  ++VA
Sbjct: 247 HFRPASTLAFCNTKARCRDLVELLRAQGYQALALHGELEQRERDQVLVQFANRSCSVLVA 306

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++    E ++HRIGRTGRA + G AF+LV+ +++  +  +E
Sbjct: 307 TDVAARGLDIAQLEAVINVEITPDPEVHVHRIGRTGRADQEGWAFSLVSMDEMGRVGNLE 366

Query: 362 KLIEKKVDWLNGDLSSLNPP-----LEKIDIAQHNHARKNNPIP 400
           +    + +W    L+ L P      L  +   Q    RK    P
Sbjct: 367 QHHGGEFEWHP--LAELTPASSERLLAPMVTLQMLGGRKEKIRP 408


>gi|157135755|ref|XP_001663578.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108870126|gb|EAT34351.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 727

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 117/448 (26%), Positives = 191/448 (42%), Gaps = 16/448 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D  LS K +  +    Y KPT IQ ++I   LQ  D+   A+TG+GKT +F++P+  
Sbjct: 63  SFSDFPLSKKTLGGLKQGQYHKPTAIQRESILPALQGKDILAAAKTGSGKTLAFLIPVFE 122

Query: 62  I-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                   ++     LI+ PTRELA Q+ +   K GK ++ T  L+IGG   +A+  +L 
Sbjct: 123 KLYTNQWTKLDGLGALIITPTRELALQIFETVAKIGKLHDFTTGLIIGGQNLKAEKNRLH 182

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      +            N++ILV+DEADR LD+GF   +  I   +P  RQT
Sbjct: 183 QLNIIICTPGRLLQHMDQNPLFDCTNLKILVLDEADRCLDLGFESAMNAIIENLPSERQT 242

Query: 181 LLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT T  ++     N               T  T             K   L   L 
Sbjct: 243 LLFSATQTKSVKDLARLNLRNPQYIAPHEKEQYTTPTRLQQNYVAVELGQKLTMLWSFLK 302

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                         ++           +    +  ++G ++Q  R KI + F   +   +
Sbjct: 303 AHSKQKIIVFFATCKQVKYFYEVFRKLRPSTLLLPLYGGMNQERRNKIYTEFCTKSNVCL 362

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLD P V  V   D P  A  YIHR GRT R    G++  ++  ++   +  
Sbjct: 363 LATDVASRGLDFPKVNWVVQLDCPEDANQYIHRAGRTARLNTSGESLLVLLPQEEGGVVK 422

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKID--IAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           + +  +  ++ ++ D   L  PL KI   +AQ    ++              K+ + +  
Sbjct: 423 MLERSKVPINKIHIDDKQLFSPLIKIQSFLAQSPELKETA------------KRAFVAYV 470

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGF 445
             + L + + I    +   E  A SLG 
Sbjct: 471 KSVALMKDKSIFDASKLDLEAYAKSLGL 498


>gi|62089354|dbj|BAD93121.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 variant [Homo sapiens]
          Length = 845

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 124/446 (27%), Positives = 209/446 (46%), Gaps = 15/446 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P +  
Sbjct: 81  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 140

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +             LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +++  
Sbjct: 141 LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINN 200

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +            ++++LV+DEADR+LDMGF   +  +   +P  RQTL
Sbjct: 201 INILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTL 260

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L+NP+ + V+   +   T             ++   +      
Sbjct: 261 LFSATQTKSVKDLARLSLKNPEYVWVHE-KAKYSTPATLEQNYIVCELQQKISVLYSFLR 319

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA--IHGNIDQRSRMKILSNFKEGTIQLM 299
               K  I+F +  K V  L     +    V    +HG   Q  RM++ + F      ++
Sbjct: 320 SHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVL 379

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   +   +  
Sbjct: 380 FATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAMV-- 437

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
            ++L++KKV      ++    P + ID+      +  + + Q     +R ++ + S    
Sbjct: 438 -QQLLQKKVPVKEIKIN----PEKLIDV----QKKLESILAQDQDLKERAQRCFVSYVRS 488

Query: 420 IPLKESEKISKLQQDIQENDADSLGF 445
           + L + +++  + +      A SLG 
Sbjct: 489 VYLMKDKEVFDVSKLPIPEYALSLGL 514


>gi|29351661|gb|AAH49217.1| DDX10 protein [Homo sapiens]
          Length = 745

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 124/446 (27%), Positives = 209/446 (46%), Gaps = 15/446 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P +  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +             LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +++  
Sbjct: 131 LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINN 190

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +            ++++LV+DEADR+LDMGF   +  +   +P  RQTL
Sbjct: 191 INILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTL 250

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L+NP+ + V+   +   T             ++   +      
Sbjct: 251 LFSATQTKSVKDLARLSLKNPEYVWVHE-KAKYSTPATLEQNYIVCELQQKISVLYSFLR 309

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA--IHGNIDQRSRMKILSNFKEGTIQLM 299
               K  I+F +  K V  L     +    V    +HG   Q  RM++ + F      ++
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVL 369

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   +   +  
Sbjct: 370 FATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAMV-- 427

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
            ++L++KKV      ++    P + ID+      +  + + Q     +R ++ + S    
Sbjct: 428 -QQLLQKKVPVKEIKIN----PEKLIDV----QKKLESILAQDQDLKERAQRCFVSYVRS 478

Query: 420 IPLKESEKISKLQQDIQENDADSLGF 445
           + L + +++  + +      A SLG 
Sbjct: 479 VYLMKDKEVFDVSKLPIPEYALSLGL 504


>gi|13514831|ref|NP_004389.2| probable ATP-dependent RNA helicase DDX10 [Homo sapiens]
 gi|76803554|sp|Q13206|DDX10_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX10; AltName:
           Full=DEAD box protein 10
 gi|11414894|dbj|BAB18536.1| RNA helicase [Homo sapiens]
 gi|60552874|gb|AAH91521.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Homo sapiens]
 gi|62739421|gb|AAH93654.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Homo sapiens]
 gi|62739423|gb|AAH93656.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Homo sapiens]
 gi|119587526|gb|EAW67122.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10, isoform CRA_a [Homo
           sapiens]
 gi|189054819|dbj|BAG37650.1| unnamed protein product [Homo sapiens]
          Length = 875

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 124/446 (27%), Positives = 209/446 (46%), Gaps = 15/446 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P +  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +             LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +++  
Sbjct: 131 LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINN 190

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +            ++++LV+DEADR+LDMGF   +  +   +P  RQTL
Sbjct: 191 INILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTL 250

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L+NP+ + V+   +   T             ++   +      
Sbjct: 251 LFSATQTKSVKDLARLSLKNPEYVWVHE-KAKYSTPATLEQNYIVCELQQKISVLYSFLR 309

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA--IHGNIDQRSRMKILSNFKEGTIQLM 299
               K  I+F +  K V  L     +    V    +HG   Q  RM++ + F      ++
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVL 369

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   +   +  
Sbjct: 370 FATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAMV-- 427

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
            ++L++KKV      ++    P + ID+      +  + + Q     +R ++ + S    
Sbjct: 428 -QQLLQKKVPVKEIKIN----PEKLIDV----QKKLESILAQDQDLKERAQRCFVSYVRS 478

Query: 420 IPLKESEKISKLQQDIQENDADSLGF 445
           + L + +++  + +      A SLG 
Sbjct: 479 VYLMKDKEVFDVSKLPIPEYALSLGL 504


>gi|1142710|gb|AAC50823.1| similar to DEAD box RNA helicases [Homo sapiens]
 gi|1589113|prf||2210303A RNA helicase
          Length = 875

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 124/446 (27%), Positives = 209/446 (46%), Gaps = 15/446 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P +  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +             LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +++  
Sbjct: 131 LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINN 190

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +            ++++LV+DEADR+LDMGF   +  +   +P  RQTL
Sbjct: 191 INILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTL 250

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L+NP+ + V+   +   T             ++   +      
Sbjct: 251 LFSATQTKSVKDLARLSLKNPEYVWVHE-KAKYSTPATLEQNYIVCELQQKISVLYSFLR 309

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA--IHGNIDQRSRMKILSNFKEGTIQLM 299
               K  I+F +  K V  L     +    V    +HG   Q  RM++ + F      ++
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVL 369

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   +   +  
Sbjct: 370 FATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAMV-- 427

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
            ++L++KKV      ++    P + ID+      +  + + Q     +R ++ + S    
Sbjct: 428 -QQLLQKKVPVKEIKIN----PEKLIDV----QKKLESILAQDQDLKERAQRCFVSYVRS 478

Query: 420 IPLKESEKISKLQQDIQENDADSLGF 445
           + L + +++  + +      A SLG 
Sbjct: 479 VYLMKDKEVFDVSKLPIPEYALSLGL 504


>gi|146180580|ref|XP_001021192.2| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila]
 gi|146144450|gb|EAS00947.2| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila SB210]
          Length = 602

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 114/403 (28%), Positives = 184/403 (45%), Gaps = 32/403 (7%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP----- 58
            ++    K++  + +    KPTPIQ+  +P VL   D+ GIA TG GKT  F+LP     
Sbjct: 139 KEMKFPKKIIAILKEKKVKKPTPIQMVGLPTVLLGRDMIGIAPTGQGKTIVFLLPALVMA 198

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +   +     R   P  +I+ P+    A       +      +  +L IGG+    Q  +
Sbjct: 199 IEHEMNMPLFRGEGPLAIIIVPSTYELACYYSQKLQEAGYPQIRCSLSIGGMDMMQQIAQ 258

Query: 119 LERGADVLICTPGRIL----------------------DHFNRGKLLMNNIEILVIDEAD 156
           +  G  ++                              D  ++ K  MN    +V+DEAD
Sbjct: 259 VREGVHLIKYYGLMNNTFEIYEVVELQLDMVGTPGRTSDMVDKQKFNMNLCRYIVLDEAD 318

Query: 157 RMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
           R+LDM F   I+NI   VP  RQTLLFS+TM  ++Q     F +      +      A  
Sbjct: 319 RLLDMIFEKEIRNIIDHVPGARQTLLFSSTMPKKVQD----FAKQALIDPIIVNVGRAGQ 374

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
           +    +       ++  L   +   Q T    +IFC++  +V ++   L  +G  V ++H
Sbjct: 375 VNLNVIQEVEYVKQEEKLQYLISCLQKTKPPVLIFCDKSNDVDDIHEYLLLKGIDVTSLH 434

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G   Q  R K +  F++    ++VA+D+ A+GLD P+V HV NFD+P   E+Y+HRIGRT
Sbjct: 435 GGKKQEERTKAMKEFQQSQKDVLVATDIGAKGLDFPNVQHVINFDMPKEIESYVHRIGRT 494

Query: 337 GRAGRHGKAFTLVAK-EDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           GR G+ G+A T V K +D   +  ++ L+ +    +   L  +
Sbjct: 495 GRLGKTGRATTFVNKQQDENILSDLKMLLMEAKQPIPHFLKQI 537


>gi|228939265|ref|ZP_04101858.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228972144|ref|ZP_04132760.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978757|ref|ZP_04139128.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           Bt407]
 gi|228781018|gb|EEM29225.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           Bt407]
 gi|228787628|gb|EEM35591.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228820460|gb|EEM66492.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326939841|gb|AEA15737.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 389

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 100/348 (28%), Positives = 179/348 (51%), Gaps = 8/348 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P +  A   AG+ + T IQ + IP +L+  DV   + TGTGKT +++LP+L  +      
Sbjct: 7   PFLQEAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI---NPE 63

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           V+ P+ +IL PTREL  Q+ +  +K+     ++ A LIGG   + Q +KL++   V++ +
Sbjct: 64  VKQPQVVILAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLKKHPRVIVGS 123

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGRIL+     KL M+ ++ +V DE D+++    +  +Q++       RQ + FSATMT 
Sbjct: 124 PGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQLVFFSATMTK 183

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
             +  + +    P+ + V    S +         TY    ++                 +
Sbjct: 184 AAEDAARDLAVEPQLVRVTRAESKSLVE-----HTYIICERREKNDYVRRIMHMGDVKAV 238

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
            F N    +  +   L+ +     A+H    ++ R   +  F+ G +++++A+D+AARG+
Sbjct: 239 AFLNDPFRLDEITQKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGI 298

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           DI D+ HV + ++P+  + YIHR GRTGR G+ G   +LV  ++ + +
Sbjct: 299 DIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTPQEERKL 346


>gi|223590197|sp|A5DKW3|DRS1_PICGU RecName: Full=ATP-dependent RNA helicase DRS1
 gi|190347530|gb|EDK39816.2| hypothetical protein PGUG_03914 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 705

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 142/473 (30%), Positives = 235/473 (49%), Gaps = 32/473 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L LS  ++  V + GY  P+ IQ  +IP+ +   D+   A TG+GKTA++++P++ 
Sbjct: 199 SFQALQLSRPLLKGVGNLGYTVPSAIQAASIPIAMMGKDIVAGAVTGSGKTAAYLIPIIE 258

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            L    A V   R ++L PTRELA QV D  +K G+   NL   L +GG+    Q ++L+
Sbjct: 259 RLIYKPAAVSATRVIVLTPTRELAIQVCDVGKKLGQFVANLNFGLAVGGLNLRQQEQQLK 318

Query: 121 RGADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFI-PYIQNITSLVPFTR 178
              D+++ TPGR++DH        + N+E+LV+DEADRML+ GF     + +  +    R
Sbjct: 319 SRPDIVVATPGRLIDHIRNSPSFSIENLEVLVMDEADRMLEEGFQVELTEILELIPKHKR 378

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET--IEHCFVATYAQYSKKCALLQ 236
           QT+LFSATM  ++Q + +  L  P RI VN P   A     E   +              
Sbjct: 379 QTMLFSATMNTKIQDLIQLSLDKPVRIMVNPPKQAASKLVQEFVRIRKREHLKPALLYHL 438

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L         ++F ++K+    L   L   G  V  +HG++ Q  R++ + +F+   +
Sbjct: 439 LRLVDPQQQNRIVVFVSRKEMAHRLRIVLGLLGMKVSELHGSLTQEQRLQSVKDFRSLAV 498

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDI 354
            +++ +DLAARGLDIP +  V NFD+P   E Y+HR+GRT RAGR G++ T V  + +D 
Sbjct: 499 PVLICTDLAARGLDIPKIEIVINFDMPKTHEIYLHRVGRTARAGREGRSITFVGESNQDR 558

Query: 355 KHIDAIEKLIE--------------KKVDWLNGDLSS----LNPPLE------KIDIAQH 390
             +    K +E              KKV+ LN  + S    ++  LE      +I  A+ 
Sbjct: 559 SIVKDAIKSLEEQKNGKAVSRTVDWKKVEELNSIVESKKDTIDEVLEEEKSAKEILQAEM 618

Query: 391 NHARKNNPIPQKSTGFDRRKKN-YSSQKSHIPLKESEKISKLQQDIQENDADS 442
              + +N +  +     R K+  + S++     + +  +  L +  ++ ++  
Sbjct: 619 QLEKASNIMKHEKEIHSRPKRTWFQSEQEKKQAQRTPVMQSLTKHGKKVNSKK 671


>gi|328957654|ref|YP_004375040.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4]
 gi|328673978|gb|AEB30024.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4]
          Length = 451

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 136/451 (30%), Positives = 205/451 (45%), Gaps = 28/451 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL P ++ A+ + G+ KPT +Q K IP +     V G +QTG+GKT +F+LP++ 
Sbjct: 4   TFEKFGLQPFLIDAINEIGFTKPTEVQEKLIPAIKSGKSVIGQSQTGSGKTHTFLLPLIN 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  R  V++  T       E   Q A    +      +    + G        K    
Sbjct: 64  KIDPSRKEVQVVITTPSRELAEQIYQAALQLVEKAPAKIIVQNFVGGTDKKRQITKLAGT 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD      LL+    +LVIDEAD  LDMGF+  +  I S +P   Q L
Sbjct: 124 QPHIVIGTPGRILDLVTEKALLIYTSPVLVIDEADMTLDMGFLTDVDQIASKLPEKLQML 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +LQ   + ++ NP   ++   +  + TI        +   K    +   L +
Sbjct: 184 VFSATIPIKLQPFLKKYMSNPLFEQIQPKAIISPTI---ENWLISTKGKDRIDVIYELLT 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  +IF N K  V  L   L+ +G  V  IHG+I  R R +++   +    Q +VA
Sbjct: 241 IGQPYLVMIFANTKSKVDELADGLKSRGIKVAKIHGDIPPRERKRVMKQVQNLEYQFVVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+DI  V HV N ++P     +IHR+GRTGR    G A TL A  D   I  IE
Sbjct: 301 TDLAARGIDIEGVSHVINAEIPRDLSFFIHRVGRTGRNNLKGTAITLYAPSDENLIIDIE 360

Query: 362 KL-------------------IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ- 401
           KL                    +++    N     ++P L+ + I+Q     K     + 
Sbjct: 361 KLGIPFEPKMIQKGEIVDTYDRKRRTTRENTATDKIDPKLKSM-ISQTKKKVKPGYKKKM 419

Query: 402 ----KSTGFDRRKKNYSSQKSHIPLKESEKI 428
               K +G  +R+    SQ + I   + EKI
Sbjct: 420 SRAIKESGLKQRRVERRSQANAIKKSKQEKI 450


>gi|313202794|ref|YP_004041451.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312442110|gb|ADQ78466.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 453

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 127/388 (32%), Positives = 200/388 (51%), Gaps = 12/388 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPM 59
           M FADLG++  ++ A+       PT IQ++ IP +L    D+  +AQTGTGKTA+F +P+
Sbjct: 1   MTFADLGINDDIIQALDGNNISTPTDIQLQAIPHILSHTSDLVAVAQTGTGKTAAFSIPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKK 118
           L  +     +++    L+L PTREL  QVA  F  + K  +   A  + G  P E Q +K
Sbjct: 61  LQSVNPLLPQIQA---LVLVPTRELGQQVAREFFLFSKYLSRVFAEAVYGGAPIEDQIQK 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+R   V++ TPGR++D   R  L +++++ LV+DEAD M++MGF   I  I        
Sbjct: 118 LKRPTHVVVATPGRLIDLLERKALSLDHLKYLVLDEADEMMNMGFKDGIDRILESCNKNI 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             +LF+ATM  +++ +   +L+                        Y Q  K      + 
Sbjct: 178 TKMLFTATMPADVKHIISKYLRPGFAEIHINAEEFINRNIEHSYLLYKQGEKLEY--LKA 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             S    + GI FC  K +   L   L     S  A+HGN++Q  R K++  FK G+I L
Sbjct: 236 FLSGHADERGIAFCRTKLDAKRLAKQLAGCIVSADALHGNLNQEMRDKVMRAFKRGSINL 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ D+ ++ ++ +P + E Y HR GRT RAG+ G +  L  K+ ++ I 
Sbjct: 296 LVATDIAARGIDVKDLDYIVHYSLPEKTEQYTHRSGRTARAGKSGISVCLATKDQLEDIH 355

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKID 386
            ++  +      LN     L P  EK +
Sbjct: 356 TLQSELNILFSPLN-----LQPKHEKPE 378


>gi|313233521|emb|CBY09693.1| unnamed protein product [Oikopleura dioica]
          Length = 800

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 128/441 (29%), Positives = 220/441 (49%), Gaps = 21/441 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   +   GY  PTPIQ K IP ++   DV  +A+TG+GKTA+F++P+L  
Sbjct: 39  FQSMGLSHGVFKGIFRRGYKIPTPIQRKCIPKIIDGKDVVAMARTGSGKTAAFLIPILER 98

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+K   R   PR +IL PTRELA Q A       K  NL+V++++GG   + Q  +L++ 
Sbjct: 99  LKKREQRG--PRVVILSPTRELAIQTAKFTNDLSKFCNLSVSVILGGDSLDNQFTQLDQN 156

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR+L         +N ++++V DEAD++ D+GF   +  I   +P ++QTLL
Sbjct: 157 PDIVIATPGRLLHLLVEMDRRLNYVKMVVFDEADQLFDLGFTEQLNEILGRLPESKQTLL 216

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ +++ + ++  L++P+ I ++      E ++  F     +      L       +
Sbjct: 217 FSATLPNKILEFAKAGLRDPELIRLDVERRLPENLQLTFFHARHEDKIAALLHLLGNVIK 276

Query: 243 DTMKNGIIFCNQK-----KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              K  I    +      K  +   +      +S           SR +      + T  
Sbjct: 277 ADEKTVIFVATKHHVELVKLFLERYNYTPCYIYSSMDPFARKLMISRFRHEDEDPDKTTN 336

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ +D+AARG+DIP +  V NF    +A+ +IHR+GR  RAGR G A+++V+ E++ ++
Sbjct: 337 ILITTDIAARGIDIPLLDAVVNFHFAAKAKTFIHRVGRVARAGRPGHAYSIVSNEEMPYL 396

Query: 358 DAIEKLIEKKVDW-LNGD-----------LSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
             +   + + + +  +GD            S+++   + +  A    A   + I     G
Sbjct: 397 LDLHVFLGRSLGFCKDGDKSWDGKIGRYPQSAIDDEADIVSTAIKESADIQSQIKSAENG 456

Query: 406 FD--RRKKNYSSQKSHIPLKE 424
           +   RR K   S +S    KE
Sbjct: 457 YKGFRRHKEKPSSESCTKFKE 477


>gi|21241215|ref|NP_640797.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21106527|gb|AAM35333.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 430

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 127/376 (33%), Positives = 193/376 (51%), Gaps = 10/376 (2%)

Query: 1   MDFADLGLSPKVV----CAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFV 56
           M F+DL LSP++      A+  AG   PTPIQ + IP +L   D+  +AQTG+GKT ++ 
Sbjct: 1   MSFSDLSLSPQLQPFFDTALAKAGLRTPTPIQQQAIPPMLDGRDLIAMAQTGSGKTLAYA 60

Query: 57  LPMLTILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLT--VALLIGGIPFE 113
           LP+L                L+L PTRELAAQV D   +   +        +  GG    
Sbjct: 61  LPLLQQRCLAPDTAPRVLGALVLVPTRELAAQVEDALRQLAAHLPRRLKSVVATGGSSIN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  GAD+++ TPGR+LD      L +N +  LV+DEADR+L++GF   +  I +L
Sbjct: 121 PQLLALRGGADLVVATPGRLLDLVEHNALRLNGVTTLVLDEADRLLELGFGAELDRILAL 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQT+LFSAT    +  +++  L++P R+ ++    T E          A  + +  
Sbjct: 181 LPAQRQTVLFSATFPPAIASLAKRRLRDPLRVTIDA---TPEQAPAIAQCAIAVDAGQRT 237

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L + L  +      ++F   + +   +   L K G +   +HG + Q  R + L  FK+
Sbjct: 238 QLLRHLLQEHAWPQLLVFVASRHSADKVAEKLSKTGIAALPLHGELSQGRRERTLRAFKQ 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             +Q++VA+DLA RG+DI  +  V N+D+P    +Y HRIGRT RAG  G A + V  + 
Sbjct: 298 ADVQVLVATDLAGRGIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGVAISFVTADS 357

Query: 354 IKHIDAIEKLIEKKVD 369
            +    IEK    +V 
Sbjct: 358 AQQWRLIEKRQGLRVP 373


>gi|325918819|ref|ZP_08180902.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
 gi|325534965|gb|EGD06878.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
          Length = 429

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 130/427 (30%), Positives = 210/427 (49%), Gaps = 16/427 (3%)

Query: 1   MDFADLGLSPKVV----CAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFV 56
           M F  L LSP++      A+  AG+  PTPIQ + IP +L   D+  +AQTG+GKT ++ 
Sbjct: 1   MSFTHLSLSPQLQPFFDTALSKAGHRTPTPIQQQAIPPMLAGRDLIAMAQTGSGKTLAYA 60

Query: 57  LPMLTILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLT--VALLIGGIPFE 113
           LP+L                ++L PTRELA QV +   +   +        + IGG    
Sbjct: 61  LPLLQQRMLAPETAPRVLGAVVLVPTRELAVQVDETLRQLAAHLPRRLKTVVAIGGSSIN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  GAD+++ TPGR+LD  +   L +  +  LV+DEADR+L++GF   +  I +L
Sbjct: 121 PQLLALRGGADIVVATPGRLLDLVDHNALRLGEVATLVLDEADRLLELGFGAELDRILAL 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ++LFSAT    +  +++  L++P RI ++    T E          A  + +  
Sbjct: 181 LPTQRQSVLFSATYPPAIAALAKRRLRDPLRITIDA---TPEQAPAIEQRALAVDAGQRT 237

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L + L ++    + ++F   +     +   L K G +   +HG + Q  R + L +FK+
Sbjct: 238 QLLRHLLTEHGWSHVLVFVASRHTADKVAEKLGKAGINAQPLHGELSQGRRARTLQSFKQ 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             +Q++VA+DLA RG+DI  +  V N+D+P    +Y HRIGRT RAG  G A + +  ++
Sbjct: 298 HEVQVLVATDLAGRGIDIDALPAVINYDLPRSTVDYTHRIGRTARAGASGVAISFITADN 357

Query: 354 IKHIDAIEKLIEKK-----VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
            +    IEK    +     +D     L++  P  E    A    A  N  I  K      
Sbjct: 358 AQQWRLIEKRQGLRVPTRVIDGFEPALATSAPAAET-PKAGTRTADDNGGIKGKRPSKKD 416

Query: 409 RKKNYSS 415
           + +  ++
Sbjct: 417 KLRAAAA 423


>gi|300934004|ref|ZP_07149260.1| putative ATP-dependent RNA helicase [Corynebacterium resistens DSM
           45100]
          Length = 386

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 121/355 (34%), Positives = 183/355 (51%), Gaps = 5/355 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGLS  +V A+   G   P PIQ   IP  +Q  D+ G   TG+GKT +F LP++ 
Sbjct: 7   TFADLGLSLPIVRALNQEGVKHPFPIQAAAIPQAIQGRDILGRGPTGSGKTFTFGLPIIE 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L++G +  + PR LIL PTRELAAQV    E         V  ++GG+        L R
Sbjct: 67  SLQRGASAPKKPRALILVPTRELAAQVRQRLEPIANAAGQRVLEVVGGVKISRNITALAR 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+L+ TPGR  D  ++ +L  + + IL +DEAD+M DMGF+P +  +   +    Q L
Sbjct: 127 PVDILVATPGRAQDLLDQKQLDFSEVRILALDEADQMADMGFLPQVTRLLQRLNSECQHL 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++Q +   F+  P        +++ ++++H       + ++  A+++     
Sbjct: 187 LFSATLDGDVQILVNRFMNEPVTHSTGEATASVDSMQHLLAVFDERDARNAAIIEL---- 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  ++F   K  V      L + G     +HG   Q +R   L  F  G + ++VA
Sbjct: 243 GKLGRRTVMFMRTKYAVDRQVKKLVRAGVPAVGLHGKKGQSTRENALGAFSTGEVSVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +D+AARG+D+ DV  V + D P   + Y+HR GRT RAG  G   TL    DIK 
Sbjct: 303 TDIAARGIDVKDVELVVHIDPPAEHKAYVHRAGRTARAGAEGTVVTL-TYADIKD 356


>gi|673433|emb|CAA40268.1| protein synthesis initiation factor 4A [Mus musculus]
 gi|15214821|gb|AAH12547.1| Eukaryotic translation initiation factor 4A, isoform 2 [Homo
           sapiens]
 gi|29126861|gb|AAH48105.1| Eukaryotic translation initiation factor 4A, isoform 2 [Homo
           sapiens]
 gi|119598580|gb|EAW78174.1| eukaryotic translation initiation factor 4A, isoform 2, isoform
           CRA_c [Homo sapiens]
          Length = 408

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 196/378 (51%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L   ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 35  NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 94

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF-EAQNKKLE 120
            LE      +    L+L PTRELA Q+       G     T    IGG        K   
Sbjct: 95  QLEIEFKETQA---LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQA 151

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I  I   +  + Q 
Sbjct: 152 EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQV 211

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I+  ++    +  K   L      
Sbjct: 212 VLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDL--Y 269

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 270 ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLI 329

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V +ED + +  I
Sbjct: 330 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI 389

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      V+ +  +++ L
Sbjct: 390 ETFYNTTVEEMPMNVADL 407


>gi|16198386|gb|AAH15842.1| Eukaryotic translation initiation factor 4A, isoform 2 [Homo
           sapiens]
          Length = 407

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 196/378 (51%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L   ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 34  NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF-EAQNKKLE 120
            LE      +    L+L PTRELA Q+       G     T    IGG        K   
Sbjct: 94  QLEIEFKETQA---LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQA 150

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I  I   +  + Q 
Sbjct: 151 EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQV 210

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I+  ++    +  K   L      
Sbjct: 211 VLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDL--Y 268

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 269 ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLI 328

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V +ED + +  I
Sbjct: 329 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI 388

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      V+ +  +++ L
Sbjct: 389 ETFYNTTVEEMPMNVADL 406


>gi|323187577|gb|EFZ72886.1| ATP-independent RNA helicase dbpA [Escherichia coli RN587/1]
          Length = 457

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 133/401 (33%), Positives = 212/401 (52%), Gaps = 10/401 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVRAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDVSLFQTQG---LVLCPTRELADQVAGELRRLARFLLNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDW-LNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
             +++ K++W      SS+ P   ++     +  +K    P
Sbjct: 357 SDMLQIKLNWQTPPANSSIVPLKAEMATLCIDGGKKAKMRP 397


>gi|89900206|ref|YP_522677.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
 gi|89344943|gb|ABD69146.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
          Length = 623

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 130/415 (31%), Positives = 208/415 (50%), Gaps = 51/415 (12%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH----------DVCGIAQTGTGKT 52
           F  LGL+P+++ AV D G+ +PT +Q+KTIPL +Q H          D+   +QTG+GKT
Sbjct: 54  FVTLGLAPELIQAVKDLGFTQPTTVQLKTIPLAMQGHSASDDAARFIDLMVSSQTGSGKT 113

Query: 53  ASFVLPMLT---------------------------------------ILEKGRARVRMP 73
           A+F+LP+L                                                   P
Sbjct: 114 AAFLLPVLHTLLTQMAQAEAKERSDFERAVADAAAKGEAPPKRAKRKDPTNPRHFAPAAP 173

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
             LI+ PTRELA QVA +     ++        I G           + A++++ TPGR+
Sbjct: 174 GALIVCPTRELAQQVAHDAIDLVQHCRGLRVANIVGGMPYQLQIAKLQNANLVVATPGRL 233

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193
           LD     ++ ++ ++ LV+DEADRMLD+GF   +  I  L    +QT++FSAT    +Q+
Sbjct: 234 LDLQRSMQIKLDQVQFLVVDEADRMLDLGFSDDLAEINQLTIERKQTMMFSATFAPRIQQ 293

Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
           ++   ++ P+R+++++P      I            K+            T+   ++F +
Sbjct: 294 LASRVMREPQRLQIDSPQEKHANISQKLFWADNAQHKRKL--LDHWLRDTTINQALVFAS 351

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            +     L + L+++GFS  A+HG + Q  R + L   ++G +Q++VA+D+AARG+D+P 
Sbjct: 352 TQIECDGLANDLQQEGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVAARGIDVPT 411

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           V HVFNF +P +AE+Y HRIGRTGRAGR G A T     D + I  IE    +++
Sbjct: 412 VTHVFNFGLPMKAEDYTHRIGRTGRAGRDGIAVTFAEFRDRRKIMDIEHYTHQQL 466


>gi|307702030|ref|ZP_07639038.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
           mitis NCTC 12261]
 gi|307616675|gb|EFN95864.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
           mitis NCTC 12261]
          Length = 447

 Score =  133 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 202/452 (44%), Gaps = 43/452 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKKYISEALEELKFTTPTEVQDKLIPIVLTGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +   +  +
Sbjct: 61  QQLDEADDSVQAV---ITAPSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKARQIDK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +          
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 237 --TQLMQPYLAMIFVNTKMRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL-------------------------IEKKVDWLNGDLSSL---------NPPLE 383
             +EKL                          EKK D L+ ++  L             +
Sbjct: 355 RELEKLGIKFTPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKKKKVKPGYKK 414

Query: 384 KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           KI  A     RK      ++ G   RK    +
Sbjct: 415 KIQWAVDEKRRKTKRAENRARGRAERKAKRQT 446


>gi|56605748|ref|NP_001008336.1| eukaryotic initiation factor 4A-II [Rattus norvegicus]
 gi|77404209|ref|NP_001029216.1| eukaryotic initiation factor 4A-II [Bos taurus]
 gi|83700235|ref|NP_001958.2| eukaryotic initiation factor 4A-II [Homo sapiens]
 gi|154147698|ref|NP_001093665.1| eukaryotic initiation factor 4A-II [Sus scrofa]
 gi|176865892|ref|NP_038534.2| eukaryotic initiation factor 4A-II isoform a [Mus musculus]
 gi|197098908|ref|NP_001126879.1| eukaryotic initiation factor 4A-II [Pongo abelii]
 gi|307548907|ref|NP_001182590.1| eukaryotic translation initiation factor 4A2 [Macaca mulatta]
 gi|55621670|ref|XP_516936.1| PREDICTED: eukaryotic initiation factor 4A-II isoform 11 [Pan
           troglodytes]
 gi|74003468|ref|XP_545242.2| PREDICTED: similar to eukaryotic translation initiation factor 4A2
           isoform 2 [Canis familiaris]
 gi|194222679|ref|XP_001498096.2| PREDICTED: similar to Eukaryotic initiation factor 4A-II
           (ATP-dependent RNA helicase eIF4A-2) (eIF4A-II)
           (eIF-4A-II) [Equus caballus]
 gi|291400269|ref|XP_002716499.1| PREDICTED: eukaryotic translation initiation factor 4A, isoform 2
           [Oryctolagus cuniculus]
 gi|301758024|ref|XP_002914858.1| PREDICTED: eukaryotic initiation factor 4A-II-like [Ailuropoda
           melanoleuca]
 gi|2507330|sp|P10630|IF4A2_MOUSE RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|45645183|sp|Q14240|IF4A2_HUMAN RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|73621053|sp|Q5R4X1|IF4A2_PONAB RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|81889423|sp|Q5RKI1|IF4A2_RAT RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|109892472|sp|Q3SZ65|IF4A2_BOVIN RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|673434|emb|CAA40269.1| protein synthesis initiation factor 4A [Mus musculus]
 gi|15489200|gb|AAH13708.1| Eukaryotic translation initiation factor 4A, isoform 2 [Homo
           sapiens]
 gi|26345442|dbj|BAC36372.1| unnamed protein product [Mus musculus]
 gi|32880063|gb|AAP88862.1| eukaryotic translation initiation factor 4A, isoform 2 [Homo
           sapiens]
 gi|55716055|gb|AAH85859.1| Eukaryotic translation initiation factor 4A2 [Rattus norvegicus]
 gi|55733019|emb|CAH93195.1| hypothetical protein [Pongo abelii]
 gi|61359891|gb|AAX41782.1| eukaryotic translation initiation factor 4A isoform 2 [synthetic
           construct]
 gi|62969091|gb|AAH94422.1| Eukaryotic translation initiation factor 4A2 [Mus musculus]
 gi|74267868|gb|AAI03107.1| Eukaryotic translation initiation factor 4A, isoform 2 [Bos taurus]
 gi|85792276|gb|ABC84195.1| eukaryotic translation initiation factor 4A isoform 2 [Sus scrofa]
 gi|119598578|gb|EAW78172.1| eukaryotic translation initiation factor 4A, isoform 2, isoform
           CRA_a [Homo sapiens]
 gi|119598583|gb|EAW78177.1| eukaryotic translation initiation factor 4A, isoform 2, isoform
           CRA_a [Homo sapiens]
 gi|123981670|gb|ABM82664.1| eukaryotic translation initiation factor 4A, isoform 2 [synthetic
           construct]
 gi|123996477|gb|ABM85840.1| eukaryotic translation initiation factor 4A, isoform 2 [synthetic
           construct]
 gi|148665242|gb|EDK97658.1| eukaryotic translation initiation factor 4A2, isoform CRA_d [Mus
           musculus]
 gi|149019926|gb|EDL78074.1| eukaryotic translation initiation factor 4A2, isoform CRA_a [Rattus
           norvegicus]
 gi|296491283|gb|DAA33346.1| eukaryotic initiation factor 4A-II [Bos taurus]
 gi|307684696|dbj|BAJ20388.1| eukaryotic translation initiation factor 4A, isoform 2 [synthetic
           construct]
 gi|227239|prf||1617105C initiation factor 4AII
          Length = 407

 Score =  133 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 196/378 (51%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L   ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 34  NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF-EAQNKKLE 120
            LE      +    L+L PTRELA Q+       G     T    IGG        K   
Sbjct: 94  QLEIEFKETQA---LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQA 150

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I  I   +  + Q 
Sbjct: 151 EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQV 210

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I+  ++    +  K   L      
Sbjct: 211 VLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDL--Y 268

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 269 ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLI 328

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V +ED + +  I
Sbjct: 329 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI 388

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      V+ +  +++ L
Sbjct: 389 ETFYNTTVEEMPMNVADL 406


>gi|325192108|emb|CCA26569.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
 gi|325192439|emb|CCA26875.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 648

 Score =  133 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 113/393 (28%), Positives = 191/393 (48%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +     ++ A+      +PTPIQ++ +P +L   D+ GIA TG+GKT +F LP++ 
Sbjct: 197 SFEMMRFPEAILKALKAKKINRPTPIQVQALPCILSGRDLIGIAFTGSGKTITFTLPLIM 256

Query: 62  ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKY-------GKNYNLTVALLIGG 109
              +   ++ +     P  +I+ P+REL  Q  +  + +       G     ++ L+ G 
Sbjct: 257 FALEEEMKMPIIGQEGPFGIIVGPSRELMRQTFEVVQHFTEALSAAGYPQLRSLLLIGGE 316

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                      +G  +++ TPGR+       ++ +   + + +DE DRMLD+GF   +  
Sbjct: 317 DKRTQCELIARKGVHIVVATPGRLNHLLKTNEMNLRLCKYICLDEGDRMLDLGFDEEVSA 376

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I +     RQTLLFSATM     +  ++F +      V      A       +       
Sbjct: 377 IFNHFTSQRQTLLFSATMP----QKFQDFAKQVLVKPVFVNVGRAGAANLDVIQEVEYVK 432

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           +   ++  L   Q T    +IFC +K +V ++   L  +G     IHG  DQ+ R + + 
Sbjct: 433 QDAKIVYLLECLQKTGPPVMIFCEKKGDVDDIYEYLILKGIQAVGIHGGKDQKERNEAID 492

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G   +++A+D+AA+GLD PD+ HV NFD+P   ENY+HRIGRTGR G+ G A T +
Sbjct: 493 LFKNGQKDVLIATDIAAKGLDFPDIKHVINFDMPAEIENYVHRIGRTGRCGKTGVATTFI 552

Query: 350 AKE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
            K      +  ++ L+ +    +   L++L+ P
Sbjct: 553 NKNVPESVLLDLKHLLVEAKQSVPPVLAALDDP 585


>gi|302417318|ref|XP_003006490.1| ATP-dependent RNA helicase dbp8 [Verticillium albo-atrum VaMs.102]
 gi|261354092|gb|EEY16520.1| ATP-dependent RNA helicase dbp8 [Verticillium albo-atrum VaMs.102]
          Length = 551

 Score =  133 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 113/382 (29%), Positives = 179/382 (46%), Gaps = 17/382 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L + P +  ++ +    +PT IQ   IP +L+  D  G ++TG+GKT +F +P+L 
Sbjct: 117 TFSSLNVRPWLTQSLANMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQ 176

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +          L+L PTRELA Q+ + F+  G    L V L+ GG     Q   L  
Sbjct: 177 KWAE---DPSAIYGLVLTPTRELALQIFEQFKAIGSPQGLKVTLITGGNDMRPQAIALAS 233

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILV--------IDEADRMLDMGFIPYIQNITSL 173
              V+I TPGR+ DH              +            D       +P ++   S 
Sbjct: 234 RPHVVIATPGRLADHIRTSGEDTICGLRRIRFVVLDEADRLLDGTGTGSMLPAVEECLSA 293

Query: 174 VPFTRQTLL--FSATMTDELQ----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           +P   Q     F+AT+T E++       +   +     EV+T      T           
Sbjct: 294 LPPPAQRQTLLFTATITPEVRALKDMPPKPGKEPVFICEVDTQMLAIPTTLAQKHIQVPV 353

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             ++  L   LL + +  K  I+FCN+      L H L      V ++H  + QR R   
Sbjct: 354 THREHYLHTFLLTAANVEKTVIVFCNRTTTAQFLHHLLRLLDHRVTSLHSRLPQRQRTDN 413

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L+ F+    +++VA+D+A+RGLDIP+V  V N+D+P   ++YIHR+GRT RAGR G+A T
Sbjct: 414 LARFRAAAARILVATDVASRGLDIPEVALVVNYDIPRDPDDYIHRVGRTARAGRKGEAVT 473

Query: 348 LVAKEDIKHIDAIEKLIEKKVD 369
            V + D++ + AIE  + + +D
Sbjct: 474 FVGQRDVELVLAIEARVGRTMD 495


>gi|113197619|gb|AAI21228.1| ddx52 protein [Xenopus (Silurana) tropicalis]
          Length = 595

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 88/396 (22%), Positives = 164/396 (41%), Gaps = 7/396 (1%)

Query: 9   SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
             K++  V D G+  PTPIQ++ IP++L   ++   A TG+GKT +F +P+L  L+  + 
Sbjct: 179 HSKIIQNVKDFGFHTPTPIQMQAIPIMLHGREILASAPTGSGKTMAFSIPILAHLQCPKN 238

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
           +      +                   G  + + V         +   K  ++   ++  
Sbjct: 239 KGCRALIISPTRELANQTHRELVKLSDGIGFRIHVINKAAVAAKKFGPKSSKKIDILVTT 298

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL-----LF 183
               I         +  +    +I +    L        ++  + +     +      +F
Sbjct: 299 PNRLIYLLKQDPPGIDLSSVEWLIVDESDKLFEDGKTGFRDQLASIFVACTSHLLKRAMF 358

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT   ++++  +  L N   + +   +S  ET+E   +   ++  K  A+  + L  + 
Sbjct: 359 SATFAFDVEQWCKLHLDNVVSVSIGARNSAVETVEQSLLFVGSETGKLLAM--RDLVKKG 416

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
                ++F    +    L H L  +G +V  IH    Q+ R  ++ +F+EG I +++ + 
Sbjct: 417 FTPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNVIQSFREGKIWVLICTA 476

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           L ARG+D   V  V N+D P  A  YIHRIGRTGRAG  GKA +   ++D   + ++  +
Sbjct: 477 LLARGIDFKGVNMVINYDFPTSAVEYIHRIGRTGRAGHRGKAVSFFTEDDKPMLRSVASV 536

Query: 364 IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           I+K    +   + S      K          K + I
Sbjct: 537 IQKAGCPIPDYIKSFRKLQSKQKKRMIKRPLKRDQI 572


>gi|332215079|ref|XP_003256667.1| PREDICTED: eukaryotic initiation factor 4A-II [Nomascus leucogenys]
          Length = 407

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 196/378 (51%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L   ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 34  NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF-EAQNKKLE 120
            LE      +    L+L PTRELA Q+       G     T    IGG        K   
Sbjct: 94  QLEIEFKETQA---LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQA 150

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I  I   +  + Q 
Sbjct: 151 EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQV 210

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I+  ++    +  K   L      
Sbjct: 211 VLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDL--Y 268

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 269 ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLI 328

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V +ED + +  I
Sbjct: 329 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI 388

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      V+ +  +++ L
Sbjct: 389 ETFYNTTVEEMPMNVADL 406


>gi|125537372|gb|EAY83860.1| hypothetical protein OsI_39082 [Oryza sativa Indica Group]
          Length = 630

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 119/370 (32%), Positives = 200/370 (54%), Gaps = 1/370 (0%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
           A LG+SPK+V  +   G  K  PIQ   +   +Q  D+ G A+TGTGKT +F +P+L  +
Sbjct: 101 AKLGISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAI 160

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            +   +    +  +                ++  + N+    + GG P   Q ++L  G 
Sbjct: 161 IRHNEKNSPGKFPLAIVLAPTRELAKQVEREFSDSSNVETICVYGGTPISQQIRQLNYGV 220

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
           DV+I TPGR++D   RG L ++ +  +V+DEAD+ML +GF   ++ I   VP  RQTL+F
Sbjct: 221 DVVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMF 280

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM   ++++++ +L+NP  I++               +  ++   K A+L +L++   
Sbjct: 281 SATMPTWIRRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEHA 340

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
                I+F   K++   L ++   + F   A+HG+I Q  R + L  F+EG   +++A+D
Sbjct: 341 KGGKCIVFTQTKRDADRLSYT-MGRSFQCQALHGDITQAQRERTLKGFREGHFNILIATD 399

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARGLDIP+V  V +F++PN +E ++HR GRTGRAG+ GKA  + + +  + I  +E  
Sbjct: 400 VAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSRAIRMVEND 459

Query: 364 IEKKVDWLNG 373
           +  K   L  
Sbjct: 460 VGCKFTELPK 469


>gi|17507945|ref|NP_491962.1| hypothetical protein H27M09.1 [Caenorhabditis elegans]
 gi|7206748|gb|AAF39907.1| Hypothetical protein H27M09.1 [Caenorhabditis elegans]
          Length = 630

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 129/390 (33%), Positives = 197/390 (50%), Gaps = 17/390 (4%)

Query: 2   DFADLGLSPKVVCAV-LDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            F ++     ++  +    G V PT IQI+ IP+ L   D+ GIA TG+GKT +FVLP++
Sbjct: 190 SFLEMKFPKSLLEFMQKQKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLV 249

Query: 61  TIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY------NLTVALLIGG 109
                   +    R   P  LI+ P+RELA Q+ D   +            +   L IGG
Sbjct: 250 MFCLEQEMKLPFMRSEGPFGLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGG 309

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           +P   Q K +  G  +++ TPGR+ D   +  + +     LV+DEADRMLDMGF   I++
Sbjct: 310 VPIGEQAKDVRDGIHIVVATPGRLSDMLTKKIINLEVCRYLVLDEADRMLDMGFEDEIKS 369

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I       RQTLLFSATM  ++Q     F ++     +      A       +       
Sbjct: 370 IFYFFKAQRQTLLFSATMPRKIQF----FAKSALVKPIVVNVGRAGAASLNVLQELEFVR 425

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
            +  L++ L   Q T    +IF  +K +V N+   L  +G  V +IHG  DQ  R   + 
Sbjct: 426 SENKLVRVLECLQKTSPKVLIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDRHAGIE 485

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F++    ++VA+D+A++GLD   + HV NFD+P   ENY+HRIGRTGR+GR G A T +
Sbjct: 486 AFRKNEKDVLVATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFI 545

Query: 350 AKE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
            K+ ++  +  +++L+ +    L   L  L
Sbjct: 546 NKKSEMSVLSDLKQLLAEAGQELPEFLKML 575


>gi|327282024|ref|XP_003225744.1| PREDICTED: eukaryotic initiation factor 4A-II-like [Anolis
           carolinensis]
          Length = 406

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 195/378 (51%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L   ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 33  NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF-EAQNKKLE 120
            LE      +    L+L PTRELA Q+       G     T    IGG        K   
Sbjct: 93  QLEIDLKETQA---LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQA 149

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I  I   +    Q 
Sbjct: 150 EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLSTNIQV 209

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I+  ++    +  K   L      
Sbjct: 210 VLLSATMPMDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDL--Y 267

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 268 ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLI 327

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V +ED + +  I
Sbjct: 328 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI 387

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      V+ +  +++ L
Sbjct: 388 ETFYNTTVEEMPMNVADL 405


>gi|296201956|ref|XP_002748362.1| PREDICTED: probable ATP-dependent RNA helicase DDX52 [Callithrix
           jacchus]
          Length = 575

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 99/369 (26%), Positives = 182/369 (49%), Gaps = 15/369 (4%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F  L     ++ +++  +LDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +
Sbjct: 162 TFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFGI 221

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           P+L  L++   +      LI+ PTRELA+Q+     K  +        +    +  +   
Sbjct: 222 PILMQLKQTANKGFR--ALIISPTRELASQIHRELVKISEGTGFRIHMIHKAVVAAKKFG 279

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQN----I 170
            K  +  D+L+ TP R++    +    ++  ++E LV+DE+D++ + G   +        
Sbjct: 280 PKSSKKFDILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIF 339

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            +      +  +FSAT   ++++  +  L N   + +   +S  ET+E   +   ++  K
Sbjct: 340 LACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSETGK 399

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
             A+ + + +  +     ++F    +    L H L  +G +V  IH    Q+ R   + +
Sbjct: 400 LLAMRELVKKGFNPP--VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHS 457

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+ G I +++ + L ARG+D   V  V N+D P  +  YIHRIGRTGRAG  GKA T   
Sbjct: 458 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFT 517

Query: 351 KEDIKHIDA 359
           ++D   + +
Sbjct: 518 EDDKPLLRS 526


>gi|281350720|gb|EFB26304.1| hypothetical protein PANDA_002799 [Ailuropoda melanoleuca]
          Length = 399

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 196/378 (51%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L   ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 26  NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF-EAQNKKLE 120
            LE      +    L+L PTRELA Q+       G     T    IGG        K   
Sbjct: 86  QLEIEFKETQA---LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQA 142

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I  I   +  + Q 
Sbjct: 143 EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQV 202

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I+  ++    +  K   L      
Sbjct: 203 VLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDL--Y 260

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 261 ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLI 320

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V +ED + +  I
Sbjct: 321 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI 380

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      V+ +  +++ L
Sbjct: 381 ETFYNTTVEEMPMNVADL 398


>gi|145353388|ref|XP_001420996.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|145357383|ref|XP_001422899.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581232|gb|ABO99289.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583143|gb|ABP01258.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 452

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 116/384 (30%), Positives = 189/384 (49%), Gaps = 7/384 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +      V+  + + G   PTP Q +  P+ L   D+  +A+TG+GKT ++VLP + 
Sbjct: 66  TFEEASFPAYVMDDLKERGLATPTPCQCQAWPIALSGRDLIAVAETGSGKTLAYVLPAIV 125

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK- 118
            +       +   P  L+L PTRELA+Q+     K+  +  +  A + GG+P   Q K  
Sbjct: 126 HVNAQPVLEKGEGPIALVLAPTRELASQIELEVAKFAASSEIKHACVTGGVPKGPQIKAL 185

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
              G+++ + TPGR++D  + G+  +     +V+DEADRMLDMGF P I+ I +     R
Sbjct: 186 KSGGSEICVATPGRLIDFLDGGQTNLRRTSFVVLDEADRMLDMGFEPQIRRIIAQTRCDR 245

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLF+AT   E+++V+  F++N         +                     A   +L
Sbjct: 246 QTLLFTATWPVEVREVAREFIRNDPVEMRVGGAGDGLLASKNVEQIVHIVEDAEAKYAKL 305

Query: 239 LQS---QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           +     +    + ++F   K  V  L   L  +G+    +HG+ +Q+ R  +L  F+   
Sbjct: 306 MDILEEEMDGSSILVFVETKALVDQLTRRLRSEGWPALGLHGDKEQKERDWVLEEFRAAR 365

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDI 354
             +M+++D+A+RGLD+  V  V N D P   E Y+HRIGRTGRAGR GK+ T  +   D 
Sbjct: 366 SPIMISTDVASRGLDVVGVKLVVNHDFPKSVEEYVHRIGRTGRAGRKGKSHTFFSILRDG 425

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL 378
           KH   +  ++      +   L  +
Sbjct: 426 KHARELAHVLRASNQSIPRALEGV 449


>gi|110641577|ref|YP_669307.1| ATP-dependent RNA helicase DbpA [Escherichia coli 536]
 gi|110343169|gb|ABG69406.1| ATP-independent RNA helicase DbpA [Escherichia coli 536]
          Length = 457

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 134/402 (33%), Positives = 215/402 (53%), Gaps = 12/402 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  LS   +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLSSAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+  ++C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
             +++ K++W  L  + SS+ P   ++     +  +K    P
Sbjct: 357 SDMLQIKLNWQTLPAN-SSIVPLKAEMATLCIDGGKKAKMRP 397


>gi|220927583|ref|YP_002504492.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
 gi|219997911|gb|ACL74512.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
           H10]
          Length = 437

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 127/433 (29%), Positives = 212/433 (48%), Gaps = 15/433 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L   +V A+       PT IQ K IP  L+  DV   + TGTGKT +++LP+   
Sbjct: 5   FESMELEKSLVEALKKESITVPTDIQQKAIPEALKNRDVILHSSTGTGKTLAYLLPLFMK 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNKKLE 120
           L   +  ++    LIL PT ELA QV    E   +N  +  T   +IG +    Q  KL+
Sbjct: 65  LSAEKKEMQ---ALILVPTHELAIQVVRQIELLSQNSEIKATSTPIIGDVNIMRQIDKLK 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRIL+   + K+  + I+ ++IDEADR+LD   +  I+ I       RQ 
Sbjct: 122 LKPHIIVGTPGRILELIQKRKISAHTIKTIIIDEADRLLDDYNLDNIKAIIKTTLKERQI 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT++ +  + +   ++ P  IE        + IEH +  +     +    + + L 
Sbjct: 182 VMCSATISKKTVERAMPLMKEPLVIESKADMGVPDAIEHLYFVSEQ---RDKIDVLRKLV 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                K  I F    ++++     L         IHG+  +  R K + +FK G +QL++
Sbjct: 239 RMINPKKAIAFFANSEDILVSEEKLRYHKLKAGGIHGSNIKSDRKKTMDDFKNGRLQLLI 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ASD+AARGLDI DV H+FN ++P R+ +Y+HR GRTGR G+ G A ++V +++I+ I   
Sbjct: 299 ASDIAARGLDIEDVTHIFNVNIPERSMDYLHRAGRTGRNGKPGVAISIVTEKEIEFIRKF 358

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
           EK ++ K+  +   + +      KI   +   + +    P+  +     K   SS K   
Sbjct: 359 EKELKIKI--IPKSMFN-----GKIVEYKKERSMRTTGRPKSGSPAGTEKSKISSAKRSQ 411

Query: 421 PLKESEKISKLQQ 433
           P+   +     ++
Sbjct: 412 PVDRKKAFGDKKK 424


>gi|120610252|ref|YP_969930.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120588716|gb|ABM32156.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
          Length = 446

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 152/429 (35%), Positives = 221/429 (51%), Gaps = 14/429 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M FA LGLSP +V A    G+  PTPIQ + IP VL   DV G AQTG+GKTA+F LP+L
Sbjct: 1   MPFAALGLSPALVHAAGALGFDTPTPIQAQAIPAVLDGGDVLGRAQTGSGKTAAFGLPLL 60

Query: 61  TILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNL---TVALLIGGIP 111
             L     +       R P  L+L PTRELAAQV +       +       +A+  GG+ 
Sbjct: 61  QRLLPQAQQAGARPGPRRPGALVLVPTRELAAQVGEVLRDLAGHLPGPRLKIAIACGGVS 120

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              Q   L  GAD ++ TPGR+LD      L ++ +  LV+DEADR+LD+GF   +Q + 
Sbjct: 121 INPQLMALRGGADAVVATPGRLLDLVEHNALSLSQVRALVLDEADRLLDLGFAEELQRVL 180

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +L+P  RQ LLFSAT    + +++E  L++P RIE+     TA  I    +A  A   ++
Sbjct: 181 ALLPAQRQNLLFSATFEPGVARLAEGLLRDPLRIEIAGAPGTAPDIAQRAIAVEAP--RR 238

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL+QLL  +      ++F   +    ++   L + G      HG + Q +R ++L  F
Sbjct: 239 TQLLKQLLTQEPGWTRVLVFVATQYAAEHVAEKLYQSGIYASPFHGGLSQGTRRQVLQEF 298

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           ++   Q++V +DLAARG+DI  +  V N+D+P  A +Y+HRIGRTGRAG  G A + V  
Sbjct: 299 RDERWQVLVTTDLAARGIDIAGLPAVVNYDLPRAAADYVHRIGRTGRAGASGVAVSFVTP 358

Query: 352 EDIKHIDAIEK---LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           E   H   + +   L    V+ + G   +L P  ++    +   AR     P       R
Sbjct: 359 EAAPHWRLLARRHGLQALPVEQVAGFEVALAPAAQETGATEDAPARPGKLPPGTGGIKGR 418

Query: 409 RKKNYSSQK 417
           R       +
Sbjct: 419 RPSKKDKLR 427


>gi|72389634|ref|XP_845112.1| nucleolar RNA helicase II [Trypanosoma brucei TREU927]
 gi|62176655|gb|AAX70758.1| nucleolar RNA helicase II, putative [Trypanosoma brucei]
 gi|62360172|gb|AAX80591.1| nucleolar RNA helicase II, putative [Trypanosoma brucei]
 gi|70801646|gb|AAZ11553.1| nucleolar RNA helicase II, putative [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
 gi|261328479|emb|CBH11456.1| nucleolar RNA helicase Gu, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 632

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 111/383 (28%), Positives = 174/383 (45%), Gaps = 16/383 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60
           F++  LS  +V A+   G V   P+Q  T   +++  DV   A+TG+GKT +F +P++  
Sbjct: 47  FSEFNLSSGMVKALEAQGIVSLFPVQALTFEAIMRGEDVLVQARTGSGKTLAFGIPIVEK 106

Query: 61  -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               E   AR R P  +I  PT      +       G + +L VA L GG+ +  Q + L
Sbjct: 107 LNKKEGPLARGRGPAAVIFCPT--RELAIQVRDVLAGVSGDLVVAALYGGVAYSTQERVL 164

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ---------NI 170
             G D+++ TPGR  D   +G L    ++++ +DEAD MLD+GF   I+         N 
Sbjct: 165 FSGVDIVVATPGRAKDFLEKGTLHFERVKMVCLDEADHMLDIGFKEDIELLLQRVAEQNG 224

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
           ++      QTLLFSAT+ D +   S           V   +  A      +         
Sbjct: 225 STPDEPKHQTLLFSATVPDWVHTCSFISKNKKFIDMVGQGAMRAANTIRFYRRKCGFAEV 284

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
              L   +          +IF N KK+  +L  +  K         G++ Q  R   + +
Sbjct: 285 SSMLADLVKVYSGRHGRTLIFTNTKKDCHDLSINNTKLDSQCLH--GDMQQEQRESTMKS 342

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F++    +++A+D+AARGLD+P V  V     P   + +IHR GRTGRAGR G    L  
Sbjct: 343 FRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLHQ 402

Query: 351 KEDIKHIDAIEKLIEKKVDWLNG 373
            +D   ++ IE+  + K + L  
Sbjct: 403 PKDEYVVERIERHAKIKFEVLPA 425


>gi|77359086|ref|YP_338661.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76873997|emb|CAI85218.1| putative ATP-dependent RNA helicase; putative cold-shock protein;
           could be specific for rRNA folding [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 462

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 132/367 (35%), Positives = 205/367 (55%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L   +V  +   GY   TP+Q +++P VL   D+   A+TG+GKTA+F L +L  
Sbjct: 6   FSSLALPSGLVDNLSTLGYTHMTPVQAQSLPPVLAGKDIIAQAKTGSGKTAAFSLGVLAK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L   R R++   +L+L PTRELA QVA    K  +  +    L +  G+    Q   LE 
Sbjct: 66  LNVKRFRIQ---SLVLCPTRELAEQVAVEMRKLARGIHNIKILTLCGGVSIGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  +G L ++++E LV+DEAD+MLDMGF   +  I   +P  RQTL
Sbjct: 123 GAHIIVGTPGRVDDHIRKGTLRLDDVETLVLDEADQMLDMGFQDTLDAIIERIPTNRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++ V++  L NP  ++V                     +K+     +LL  
Sbjct: 183 LFSATFPRAIEAVAKRVLSNPVMVKVEE---EQAKSTIKQYFYKMDNNKQRYPTLKLLLL 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T ++ ++FCN K     LC  L  +GFS  ++HG+++QR R + L +F   +  ++VA
Sbjct: 240 KFTPQSCVVFCNTKVETQQLCDDLVDEGFSAVSLHGDLEQRDRERTLIHFSNKSASILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V N+ + +  + ++HRIGRTGRAG+ G A ++  + +   I  I 
Sbjct: 300 TDVAARGLDIDDMDMVINYHLAHDTQTHVHRIGRTGRAGKKGIACSIYGEAEAFKIAQIG 359

Query: 362 KLIEKKV 368
              E+ V
Sbjct: 360 DHYERDV 366


>gi|47567847|ref|ZP_00238555.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|47555524|gb|EAL13867.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
          Length = 436

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 121/378 (32%), Positives = 206/378 (54%), Gaps = 12/378 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L 
Sbjct: 5   TFTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLN 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNF----EKYGKNYNLTVALLIGGIPFEAQNK 117
            +   R  V++    I  PTRELA Q+ +      +   ++  +T   LIGG   +   +
Sbjct: 65  RINASREEVQLV---ITAPTRELAQQIYEEIVKLTKFCSEDQIITARCLIGGTDKQRSIE 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P  
Sbjct: 122 KLKKQPHIVVGTPGRIKDLVEAQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKN 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +     +    L +
Sbjct: 182 LQMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKH---RNKIDLVK 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q      ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 239 RMLLQFKPYLAVVFTNTKKMADQVADGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRNIEFKHVDL 374


>gi|225560188|gb|EEH08470.1| ATP-dependent RNA helicase DBP8 [Ajellomyces capsulatus G186AR]
          Length = 539

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 123/390 (31%), Positives = 190/390 (48%), Gaps = 18/390 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL+P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F  P+L 
Sbjct: 110 SFASLGLAPWLVGSLSTMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAFAAPILQ 169

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +          +IL PTRELA Q+ +  +      +L   L+ GG     Q   L +
Sbjct: 170 KWAE---DPFGIFAVILTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIALSQ 226

Query: 122 GADVLICTPGRILDHFN----RGKLLMNNIEILVIDEADRMLDMG---FIPYIQNITSLV 174
              ++I TPGR+ DH           +N   ++V DEADR+L  G    +P ++   S +
Sbjct: 227 RPHIVIATPGRLADHITSSGADTICGLNRTRVVVFDEADRLLASGPGSMLPDVETCLSAL 286

Query: 175 PFTRQTLL--FSATMTDEL-----QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           P +       F+AT+T E+          N L            ++              
Sbjct: 287 PPSTARQTLLFTATVTPEVRALKSMPRPANKLPIFVTEVSTENKASIPPTLKQTYLQVPL 346

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             ++  L   +    ++ K  IIFCN+ K    +   L + G  V ++H  + Q  R   
Sbjct: 347 THREAFLHTLISTEANSQKPAIIFCNRTKTADLVERMLRRLGHRVTSLHSLLPQSERTAN 406

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           LS F+    +++VA+D+AARGLDIP V  V NFDVP   ++Y+HR+GRT RAGR G+A T
Sbjct: 407 LSRFRASAARILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGREGEAVT 466

Query: 348 LVAKEDIKHIDAIEKLIEKK-VDWLNGDLS 376
           LV + D++ + AIE  + +K V+W    +S
Sbjct: 467 LVGQRDVQLVLAIEDRVGRKMVEWKEEGVS 496


>gi|224060745|ref|XP_002196090.1| PREDICTED: eukaryotic translation initiation factor 4A2
           [Taeniopygia guttata]
          Length = 407

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 195/378 (51%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L   ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 34  NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF-EAQNKKLE 120
            LE      +    L+L PTRELA Q+       G     T    IGG        K   
Sbjct: 94  QLEIDLKESQA---LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQA 150

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I  I   +    Q 
Sbjct: 151 EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLSTNIQV 210

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I+  ++    +  K   L      
Sbjct: 211 VLLSATMPMDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDL--Y 268

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 269 ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLI 328

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V +ED + +  I
Sbjct: 329 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI 388

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      V+ +  +++ L
Sbjct: 389 ETFYNTTVEEMPMNVADL 406


>gi|52143321|ref|YP_083508.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus E33L]
 gi|196039663|ref|ZP_03106967.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|228958407|ref|ZP_04120130.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229091118|ref|ZP_04222341.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-42]
 gi|300118169|ref|ZP_07055917.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus SJ1]
 gi|51976790|gb|AAU18340.1| ATP-dependent RNA helicase (D-E-A-D box family) [Bacillus cereus
           E33L]
 gi|196029366|gb|EDX67969.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|228692249|gb|EEL45985.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-42]
 gi|228801265|gb|EEM48159.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|298724480|gb|EFI65174.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus SJ1]
          Length = 389

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 99/348 (28%), Positives = 178/348 (51%), Gaps = 8/348 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P +  A   AG+ + T IQ + IP +L+  DV   + TGTGKT +++LP+L  +      
Sbjct: 7   PFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI---NPE 63

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           V+ P+ ++L PTREL  Q+ +  +K+     ++ A LIGG   + Q +KL++   V++ +
Sbjct: 64  VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLKKHPRVIVGS 123

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGRIL+     KL M+ ++ +V DE D+++    +  +Q++       RQ + FSATMT 
Sbjct: 124 PGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQLVFFSATMTK 183

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
             +  + +    P  + V    S +         TY    ++                 +
Sbjct: 184 AAEDAARDLAVEPHLVRVTRAESKSLVE-----HTYIICERREKNDYVRRIMHMGDVKAV 238

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
            F N    +  +   L+ +     A+H    ++ R   +  F+ G +++++A+D+AARG+
Sbjct: 239 AFLNDPFRLDEITEKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGI 298

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           DI D+ HV + ++P+  + YIHR GRTGR G+ G   +LV  ++ + +
Sbjct: 299 DIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTPQEERKL 346


>gi|148263462|ref|YP_001230168.1| ATP-dependent RNA helicase DbpA [Geobacter uraniireducens Rf4]
 gi|146396962|gb|ABQ25595.1| ATP-dependent RNA helicase DbpA [Geobacter uraniireducens Rf4]
          Length = 474

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 142/407 (34%), Positives = 222/407 (54%), Gaps = 21/407 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L   ++  +   GY + TPIQ  ++PL+L   DV   A+TG+GKTA+F + +L+ 
Sbjct: 17  FSSLHLKIHMLKNLASLGYAEMTPIQAHSLPLILAGKDVIAKAKTGSGKTAAFGIGLLSH 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+   +RV+    L+L PTRELA QV     +  +  +    L +  G+PF  Q   LE 
Sbjct: 77  LDATSSRVQ---ALVLCPTRELADQVGKELRRLARFTDNIKVLTLCGGVPFGPQLGSLEH 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRILDH  RG L +  ++ LV+DEADRMLDMGF   I  +    P  +QTL
Sbjct: 134 GAHIVVGTPGRILDHLRRGSLDLTCLQTLVLDEADRMLDMGFQDEISALIDATPKKKQTL 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + +  +S      P  + V+     +   +  +     + ++  A +      
Sbjct: 194 LFSATYPEAIAAMSATIQHEPVAVSVDEVHDESAIEQVLYEVDKEERTEAVARIL----G 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ ++FCN K     +  +L K+GFS  AIHG+++QR R ++L  F   ++ ++VA
Sbjct: 250 HYRPESTLVFCNTKIECQEVADALVKRGFSALAIHGDLEQRERDQVLVRFANKSVSVLVA 309

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++  V N+++    E +IHRIGRTGRAG  G   +LV  ++ + + AIE
Sbjct: 310 TDVAARGLDIKELAAVINYELSRDPEIHIHRIGRTGRAGETGLGLSLVTAQESRRVQAIE 369

Query: 362 KLIEKKVDWLNGDLSSLN--------PPLEKIDIAQHNHARKNNPIP 400
             +   +    G+L+SL         PP+  + I   +  RKN   P
Sbjct: 370 TALGTPIPR--GELASLTIAAGGPLAPPMVTLCI---DGGRKNKMRP 411


>gi|332686449|ref|YP_004456223.1| ATP-dependent RNA helicase YqfR [Melissococcus plutonius ATCC
           35311]
 gi|332370458|dbj|BAK21414.1| ATP-dependent RNA helicase YqfR [Melissococcus plutonius ATCC
           35311]
          Length = 449

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 117/362 (32%), Positives = 181/362 (50%), Gaps = 3/362 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ A+ + G+ +PT +Q K I ++ +  +V G +QTG+GKT +F+LP+L 
Sbjct: 3   SFKQFQFKPFLMEALKEKGFQQPTQVQEKLIQMIQKGKNVIGQSQTGSGKTHTFLLPLLN 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V++  T           Q A    K+          + G        K   +
Sbjct: 63  KIDPTIDEVQVIITTPSRELANQIYQAAIQAAKFSSPEIHISNFIGGTDKQRQLIKLKNQ 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRILD  N   L ++     VIDEAD  LDMGF+  +  I S +P   Q L
Sbjct: 123 QPQLVVGTPGRILDMINEQALKVHTAFAFVIDEADMTLDMGFLEDVDQIASRLPKNLQML 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+ ++L+   + +L+NP   E+ + +  A TI       ++   K    L   L +
Sbjct: 183 VFSATIPEKLRPFLKKYLENPVIEEIKSETVIASTI---DNWLFSTKGKDVNQLVYQLLT 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIF N K+ V  +   L++ G  V  IHG+I  R R +++   +    Q +VA
Sbjct: 240 IGHPYLAIIFANTKQRVDEITTYLKEHGLRVAKIHGDISPRERKRVMRQVQNLEYQYVVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+DI  V  V N ++P   + +IHR+GRTGR G  G A TL +  D + I  IE
Sbjct: 300 TDLAARGIDIEGVSEVINTEIPKDLDFFIHRVGRTGRNGLKGTAITLYSPADEQQITEIE 359

Query: 362 KL 363
           KL
Sbjct: 360 KL 361


>gi|45383077|ref|NP_989880.1| eukaryotic initiation factor 4A-II [Gallus gallus]
 gi|82213243|sp|Q8JFP1|IF4A2_CHICK RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|21435808|gb|AAM53975.1|AF515726_1 translational eukaryotic inititation factor 4AII [Gallus gallus]
 gi|53132817|emb|CAG31939.1| hypothetical protein RCJMB04_14a6 [Gallus gallus]
          Length = 407

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 194/378 (51%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L   ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 34  NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF-EAQNKKLE 120
            LE      +    L+L PTRELA Q+       G     T    IGG        K   
Sbjct: 94  QLEIDLKETQA---LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQA 150

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I  I   +    Q 
Sbjct: 151 EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLSTNIQV 210

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F++ P RI V     T E I+  ++    +  K   L      
Sbjct: 211 VLLSATMPMDVLEVTKKFMREPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDL--Y 268

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 269 ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLI 328

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V +ED + +  I
Sbjct: 329 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI 388

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      V+ +  +++ L
Sbjct: 389 ETFYNTTVEEMPMNVADL 406


>gi|68478729|ref|XP_716633.1| hypothetical protein CaO19.7392 [Candida albicans SC5314]
 gi|74656359|sp|Q5A4E2|DED1_CANAL RecName: Full=ATP-dependent RNA helicase DED1
 gi|46438305|gb|EAK97638.1| hypothetical protein CaO19.7392 [Candida albicans SC5314]
 gi|238881007|gb|EEQ44645.1| ATP-dependent RNA helicase ded1 [Candida albicans WO-1]
          Length = 672

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 132/393 (33%), Positives = 202/393 (51%), Gaps = 19/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L   +V  +  + + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+
Sbjct: 187 SFTAPPLDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLS 246

Query: 62  ILEKGRA------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                                  P  L++ PTREL +Q+ +  +K+     +   ++ GG
Sbjct: 247 ESYMKGPAPVPESNGAFSSHKVYPTILVMAPTRELVSQIYEESKKFSYRSWVRACVVYGG 306

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q + ++RG D+L+ TPGR+ D  +RGK+ + NI  LV+DEADRMLDMGF P I+ 
Sbjct: 307 ADIGQQMRNMDRGCDLLVATPGRLKDLLDRGKVSLANIRYLVLDEADRMLDMGFEPQIRY 366

Query: 170 ITSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I    +   
Sbjct: 367 IVEECDMPAVKDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKILYVE 426

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
               K   L              I+F   K+   NL   L  QGF   AIHG+  Q  R 
Sbjct: 427 DDEKKSVILDLLSANENG---LTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYERE 483

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           K L+ FK G   ++VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A
Sbjct: 484 KALAAFKNGAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIA 543

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
                + +   +  + +L+ +    +   L+ +
Sbjct: 544 TAFFNRNNKNVVKGLIELLSEANQEVPDFLTKI 576


>gi|307195490|gb|EFN77376.1| Probable ATP-dependent RNA helicase DDX49 [Harpegnathos saltator]
          Length = 444

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 113/400 (28%), Positives = 186/400 (46%), Gaps = 12/400 (3%)

Query: 22  VKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPT 81
            +PT IQ   IP +L   D  G A+TG+GKT +F LP+L  L            L+L PT
Sbjct: 2   KQPTAIQQNCIPRILGGEDCIGCAKTGSGKTLAFALPILQKL---CEDPYGIFALVLTPT 58

Query: 82  RELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGK 141
           RELA Q+AD F   GK  NL   +++GG+    Q  +L +   +++ TPGR+ DH +   
Sbjct: 59  RELAFQIADQFAAIGKAINLKKCVIVGGMDMMVQGLELSKRPHIVVATPGRLADHLDSCN 118

Query: 142 LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT----DELQKVSEN 197
                    ++ +    L  G               ++ +L  +       D ++ V+ N
Sbjct: 119 TFSLKRIKFLVLDEADRLLGGHFDKQLKTIFATLPEQKQVLLFSATMTNDLDNVKSVASN 178

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
            +   +  +    ++  E  +   +            + +   + +   + ++F +  KN
Sbjct: 179 KVFIWEEKDDAGIATVKELDQRYVLCPKDVLDSYLVEVIRTFCATNKNGSIMVFTDTCKN 238

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
              L  +L   GF+  A+H  I Q+ R+  L+ FK   +Q+++A+D+AARGLDI +V  V
Sbjct: 239 CQLLSMALNDVGFTNVALHAMIKQKERLAALNKFKSNHVQILIATDVAARGLDIHEVELV 298

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
            N  +PN  + YIHR+GRT RAGR+G A +L+   D+K + AIE  I  K+     D   
Sbjct: 299 VNHVIPNVPKEYIHRVGRTARAGRNGMAVSLITPHDVKLLHAIEDAIGTKLTEYKVDDKE 358

Query: 378 LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
           +   L +I +A     ++   I    T F  +K     +K
Sbjct: 359 IVTILTQISVA-----KREAEIKLDETDFFEKKMINKRKK 393


>gi|253743327|gb|EES99753.1| ATP-dependent RNA helicase p54, putative [Giardia intestinalis ATCC
           50581]
          Length = 430

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 99/391 (25%), Positives = 171/391 (43%), Gaps = 7/391 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  +++  +   G+ + TP+Q   IP +L + DV   A+ GTGKT SF++P+L +
Sbjct: 23  FSSLGLKQELLMGLTQEGFQQLTPVQELAIPHILAKRDVVARAKNGTGKTGSFLIPILQM 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +   +  ++    L         A+VA    +   +    +   IGG+      ++    
Sbjct: 83  VNPAKDHIQALVLLHTRELAMQTAKVAKTLSRNMPDVTGRIMCAIGGVSIAEDRERAREK 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+    +   L   +  I+V+DEAD +L   FI  I+N  +     R+  L
Sbjct: 143 PLVVLATPGRLQQLIDEEILNFRDCSIVVLDEADMLLSQNFIRSIENCLAACSSKRRQTL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           F +       K   +              S        +V    +   K  LL  L++  
Sbjct: 203 FFSATFSNSLKEFCDKHLKDPEYVNAMQDSLLLRGVTQYVCMLKEDRYKLKLLSLLMKHL 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  +   + ++         ++        H  +    R +I  NF  G  +L++A+
Sbjct: 263 KINQCIVFVNSVQRCEALYKSICDEFRVPCLYTHSRMSPEERSRIYDNFIHGQARLLIAT 322

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  V NFD P  A+ Y+HRIGR+GR G  G A T+VA + + +    I+
Sbjct: 323 ELFTRGIDIRMVNVVVNFDTPLSADAYLHRIGRSGRYGHLGIAITMVAGDSEKRRFLTID 382

Query: 362 KLIEKK----VDWLNGDLSSLNPPLEKIDIA 388
             I+ +    +  L  D S +  PL+  D +
Sbjct: 383 SYIQGQANSMIHILPRDPSEI--PLDLYDAS 411


>gi|73621052|sp|Q4R4Y9|IF4A2_MACFA RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|67970988|dbj|BAE01836.1| unnamed protein product [Macaca fascicularis]
          Length = 408

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 196/378 (51%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L   ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 35  NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 94

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF-EAQNKKLE 120
            LE      +    L+L PTRELA Q+       G     T    IGG        K   
Sbjct: 95  QLEIEFKETQA---LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQA 151

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I  I   +  + Q 
Sbjct: 152 EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADGMLSRGFKDQIYEIFQKLNTSIQV 211

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I+  ++    +  K   L      
Sbjct: 212 VLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDL--Y 269

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 270 ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLI 329

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V +ED + +  I
Sbjct: 330 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI 389

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      V+ +  +++ L
Sbjct: 390 ETFYNTTVEEMPMNVADL 407


>gi|229163230|ref|ZP_04291185.1| ATP-dependent RNA helicase yqfR [Bacillus cereus R309803]
 gi|228620293|gb|EEK77164.1| ATP-dependent RNA helicase yqfR [Bacillus cereus R309803]
          Length = 436

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 114/375 (30%), Positives = 201/375 (53%), Gaps = 6/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L 
Sbjct: 5   TFTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLN 64

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +   R  V+ +      E  +++  ++    +   ++  +T   LIGG   +   +KL+
Sbjct: 65  RINPSREEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQLITARCLIGGTDKQRSIEKLK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   Q 
Sbjct: 125 KQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +     +    L   + 
Sbjct: 185 LVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKH---RNKIDLVNKML 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q +V
Sbjct: 242 LQFKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +D++
Sbjct: 302 ATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEALDSL 361

Query: 361 EKLIEKKVDWLNGDL 375
           EK  ++ +++ + DL
Sbjct: 362 EK--QRHIEFKHVDL 374


>gi|326475356|gb|EGD99365.1| eukaryotic translation initiation factor 4 [Trichophyton tonsurans
           CBS 112818]
 gi|326482351|gb|EGE06361.1| eukaryotic initiation factor 4A [Trichophyton equinum CBS 127.97]
          Length = 396

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 128/377 (33%), Positives = 208/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L+ +++  V   G+ +P+ IQ + I  V++  DV   AQ+GTGKTA+F +  L 
Sbjct: 24  SFDAMNLNAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++  + LIL PTRELA Q+       G   N+     IGG       K L+ 
Sbjct: 84  KVDTN---LKACQALILAPTRELAQQIQKVVVAIGDFMNVDCHACIGGTNVREDMKALQD 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I   +P + Q +
Sbjct: 141 GPQVVVGTPGRVHDMIQRRVLKTDHIKMFVLDEADEMLSRGFTEQIYDIFQFLPQSTQVV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 201 LLSATMPPDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L+ + F+V A+HG+++Q  R  I+  F+ G+ ++++A
Sbjct: 259 TVTITQAVIFCNTRRKVDWLTDKLQARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 379 QFYSTQIEEMPMNVADL 395


>gi|294948517|ref|XP_002785780.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Perkinsus
           marinus ATCC 50983]
 gi|239899848|gb|EER17576.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Perkinsus
           marinus ATCC 50983]
          Length = 579

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 113/392 (28%), Positives = 192/392 (48%), Gaps = 8/392 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL +   +  A+    +   T IQ K IPL+L+  DV G A+TG+GKT +F++P L 
Sbjct: 86  KFTDLQICDPLKEALTACNFTTMTDIQAKAIPLMLKGKDVLGAAKTGSGKTLAFLVPALE 145

Query: 62  ILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + +     +++ PTRELA Q+ D  ++     + T  +++GG+  + +  KL 
Sbjct: 146 LLVATRFQPKNGTGVMVISPTRELAMQIYDVCKRVVVVLSQTYGIVMGGVNRKNEADKLS 205

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEIL-VIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           RG ++++ TPGR+LDH    +  +    +  VIDEADR+L +GF   +  I  ++P  RQ
Sbjct: 206 RGINIIVATPGRLLDHLQNTRGFVYANLMSLVIDEADRILQIGFEEDMNQILKILPKKRQ 265

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVN--TPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           T LFSAT T ++  ++   L+ P  ++       +   T                  L  
Sbjct: 266 TSLFSATQTQKVNDLARLSLKKPIFVQSKGADDDAAISTASGLVQGYVVVGGDDRLRLLF 325

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V +IHG   Q +RM     F +    
Sbjct: 326 TFLKKNQKKKVMVFFSSCNSVKFHDELLNYIDIPVISIHGQKKQSARMTNFYRFCQMESG 385

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKH 356
           +++ +D+AARGLDIP V  +  +D P+  + YIHR+GRT R     GKA   +  E++  
Sbjct: 386 ILLCTDVAARGLDIPKVDWIVQYDPPDDPKEYIHRVGRTARGAEGTGKALLFLMPEELGF 445

Query: 357 IDAIEKLIEKKVDWL---NGDLSSLNPPLEKI 385
           +  + K     ++        ++++   LEK+
Sbjct: 446 LRYLRKSGVTTLNEYVFPPAKVANIQHQLEKL 477


>gi|195129025|ref|XP_002008959.1| GI13776 [Drosophila mojavensis]
 gi|193920568|gb|EDW19435.1| GI13776 [Drosophila mojavensis]
          Length = 448

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 93/393 (23%), Positives = 160/393 (40%), Gaps = 34/393 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  L L P+++  +   G+  P+ IQ   +P +L     ++   +Q+GTGKTA+FVL M
Sbjct: 79  TFEALHLKPELLKGIYAMGFNTPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 138

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L                    +R   A            Y L +           +N K+
Sbjct: 139 L--------------------SRVNVALDHPQVLCLSPTYELAIQTGEVAARMVDRNSKI 178

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             R   +      ++ +    +   G       I  ++    Q
Sbjct: 179 TEHILIGTPGKMLDWGLKMRLFDMKKIRVFVLDEADVMIATQGHHDQCIRIHKMLSSQCQ 238

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L FSAT   E+   +   +  P  I +     + + I+  +V    +  K      Q +
Sbjct: 239 MLFFSATYDKEVMDFARLIVPEPTIIRLMREEESLDNIKQYYVNCKNEEGK--YNAIQNI 296

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               ++   IIFC+ +K    L   +   G SV  + G++    R+ +L  F+ G  +++
Sbjct: 297 YGCISIGQAIIFCHTRKTAAWLASKMTTDGHSVAVLSGDLTVEQRLAVLDRFRSGQEKVL 356

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           + +++ +RG+DI  V  V NFD+P         E Y+HRIGRTGR G+ G A  L+  ++
Sbjct: 357 ITTNVLSRGIDIEQVTIVVNFDLPVDLRGNADCETYLHRIGRTGRFGKSGIAINLIDGEK 416

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
            +    AIEK  +K + +LN D +     +EKI
Sbjct: 417 SMSVCRAIEKHFQKDIIYLNTDNAD---DIEKI 446


>gi|162606504|ref|XP_001713282.1| DEAD box protein [Guillardia theta]
 gi|12580748|emb|CAC27066.1| DEAD box protein [Guillardia theta]
          Length = 386

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 109/373 (29%), Positives = 182/373 (48%), Gaps = 7/373 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  +G+  ++       G+ K T +Q+ TIP  L   D+   +QTG+GKT +++LP+L
Sbjct: 2   VKFDQIGICKQISRVCEAVGFKKATKVQVYTIPHFLIGKDLLVYSQTGSGKTLAYILPLL 61

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA-LLIGGIPFEAQNKKL 119
             L     +      +I+ P+REL  Q++  FE     +N+ +A L  G  P        
Sbjct: 62  QKLLY---KKNNYLPIIIVPSRELVFQISTTFETISCVFNIRIASLTGGIDPNVQLVMIS 118

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++      +        L +     LV+DEAD+++   F   I  I S     ++
Sbjct: 119 SNPDIIISTPGRLVEILKLTKNLEIKFCTDLVLDEADKLIHSDFKREINIINSKTNKNKK 178

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM+  L+K+    + NP RI +N     +  +   ++       +   +    L
Sbjct: 179 LMLFSATMSLGLEKIKFFKISNPVRIIINQNFFISPNLIQNYIFCPF---RYKEIYLLYL 235

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   +  I F   +K    +   L+K  F    IHG++ Q  R+  LS F  G  +++
Sbjct: 236 INEFYEEKLICFVETQKMTEKISILLKKFSFDCYIIHGSLSQNERIDTLSKFTNGKKKIL 295

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLA+RGLDI  V  + N+D P   ++YIHR GRTGRAGR G+A +L+ + D++    
Sbjct: 296 VATDLASRGLDICAVSLIINYDFPIYLKDYIHRTGRTGRAGRAGRAISLITQYDLRTFQK 355

Query: 360 IEKLIEKKVDWLN 372
           IE ++  K+  LN
Sbjct: 356 IESILNIKIAELN 368


>gi|322376932|ref|ZP_08051425.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           M334]
 gi|321282739|gb|EFX59746.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           M334]
          Length = 447

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 201/452 (44%), Gaps = 43/452 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKKYISEALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   +  + V ++      +   +  +
Sbjct: 61  QQLDETSDSVQAV---ITAPSRELATQIYQAARQIAAHSEVEVRVVNYVGGTDKARQIDK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +          
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 237 --TQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL-------------------------IEKKVDWLNGDLSSL---------NPPLE 383
             +EKL                          EKK D L+ ++  L             +
Sbjct: 355 RELEKLGIKFTPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKKKKVKPGYKK 414

Query: 384 KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           KI  A     RK      ++ G   RK    +
Sbjct: 415 KIQWAVDEKRRKTKRAENRARGRAERKAKRQT 446


>gi|320586497|gb|EFW99167.1| dead deah box DNA helicase [Grosmannia clavigera kw1407]
          Length = 662

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 97/374 (25%), Positives = 157/374 (41%), Gaps = 19/374 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F   GL P +   V  AGY  PTPIQ+  IP ++Q  DV GIAQTG+GKTA++++P+L 
Sbjct: 162 NFDHAGLHPAMRRNVQLAGYNVPTPIQMYCIPAIVQGFDVMGIAQTGSGKTAAYLIPILN 221

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     ++  P                 +           V ++        Q     R
Sbjct: 222 NLMGKAKKLAAP---------RPNPATYRHGFDPIARAEPLVVIVSPSRELGIQIFNEAR 272

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---SLVPFTR 178
                      I        L    +  +V+DEAD ML   +   +  I           
Sbjct: 273 KFCYRTMLRPLIDVMNRPMNLSFRRVRYMVLDEADEMLHDDWGEDLAKILSGGDSEDANI 332

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
             ++FSAT    L+ +++ +L N         + ++       ++     +K+ A+++  
Sbjct: 333 NYMMFSATFPKPLRDLAKEYLANDHIHFRVGRAGSSHGNIQQVISYTDPANKRKAVVEL- 391

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +       IIF N+K+    L   L   G    +IH    Q  R   +  F+ G   +
Sbjct: 392 -LNSIPPGRTIIFVNRKQMADELDDLLYNLGLPCTSIHAGRTQMEREDAMRAFRSGECPI 450

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNR----AENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
           ++A+ +AARG+D+ +V HV N+D+P+      E Y+HRIGRTGR G  G A +     D 
Sbjct: 451 LIATGVAARGIDVHNVNHVINYDLPSCDHGGIEEYVHRIGRTGRIGHRGLATSFYTDRDE 510

Query: 355 KHIDAIEK-LIEKK 367
                + + L+E K
Sbjct: 511 PIASVLTRTLLETK 524


>gi|261332680|emb|CBH15675.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 604

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 99/383 (25%), Positives = 160/383 (41%), Gaps = 5/383 (1%)

Query: 2   DFADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           D+  L L+P +V A+  D  + + T IQ + IP  L   D+   A+TG+GKT +F++P++
Sbjct: 110 DYRSLKLNPHIVTALENDFKFQELTGIQGRCIPAALAGRDLLAEAKTGSGKTLAFLIPIV 169

Query: 61  TILEKGRARVRMPRTLI----LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            I+ +   R R     I              V     K+       +  + G    +   
Sbjct: 170 EIITRVGFRQRSGTAAIIIGPTRELCLQIEGVLLKLLKHFNGSVTFLCCIGGISRKQEAF 229

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K +     V+      +         L  N+ +L +DEADR+LD GF   ++ I SL+P 
Sbjct: 230 KLVSGMMVVMATPGRLLDHLKLTTDWLTKNLLVLAVDEADRVLDNGFEDDMREIVSLLPR 289

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT LFSAT T  +++++      P             T++          S++  L+ 
Sbjct: 290 QRQTFLFSATQTTRVEQLARVSFYRPPLFISMKRKEDKATVDTLEQGYVICPSQQRLLVL 349

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                ++  K  I+F + +  V   C           A HG   Q  R      F     
Sbjct: 350 YHFVRRNLKKKVIVFFSSRNAVSFHCELFNYIDVPCVAFHGKQKQHQRSATYMQFCNAPS 409

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++  +D+AARGLDIP V  +  FD P+    Y+HR+GRT RAGR G A   +  ++   
Sbjct: 410 GVLFTTDVAARGLDIPQVDWIVQFDPPDDPVKYVHRVGRTARAGRRGNALMFLLPQEKLF 469

Query: 357 IDAIEKLIEKKVDWLNGDLSSLN 379
           +  +       V     DL+ + 
Sbjct: 470 LKYLHDDAHVSVSEYTFDLNKVK 492


>gi|332525439|ref|ZP_08401598.1| DEAD/DEAH box helicase-like protein [Rubrivivax benzoatilyticus
           JA2]
 gi|332108707|gb|EGJ09931.1| DEAD/DEAH box helicase-like protein [Rubrivivax benzoatilyticus
           JA2]
          Length = 415

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 126/424 (29%), Positives = 205/424 (48%), Gaps = 17/424 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LGL+P +  A  + G+  PTP+Q + IP  L   D+   A TG+GKTA++ L ML  
Sbjct: 5   FAALGLTPALQRACAELGFSIPTPVQQQAIPPALDGQDLVARAPTGSGKTAAYALAMLHR 64

Query: 63  LEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKKL 119
            +      R      +L PTRELA Q         +     + VA++ GG+    Q   L
Sbjct: 65  FDITPRESRRVTRALLLVPTRELAVQAGQTLRAMAREMAEPVKVAVVFGGVSVNPQMMGL 124

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GA+V++ TPGR+LD   R  L +  +++LV+DEADR+LD GF   ++ + +L+P  RQ
Sbjct: 125 RGGAEVVVATPGRLLDLVERNALKLGEVQLLVLDEADRLLDDGFADELERVLALLPAERQ 184

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT    +Q ++   L  P ++ V+                     +    L + L
Sbjct: 185 QLLFSATFPAPVQALATRLLHAPVQVAVDAAPEAGGPEIEQHAVEVDTAQR--TPLLRRL 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       ++F   +     +   L++ G +  A+HG + Q +R ++L+    G ++++
Sbjct: 243 LATHDWPRVLVFVATRHASEMVAAKLQRAGIAAAALHGELSQGARARVLAELAHGRLRVV 302

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+DLAARGL IP +  V N+D+P  A +Y HRIGRT RAG  G+A++ V      H   
Sbjct: 303 LATDLAARGLHIPALAAVVNYDLPRSAADYTHRIGRTARAGARGEAWSFVTAASEAHFRL 362

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IEK   ++V+             E++D  +        P         R+ +    +++ 
Sbjct: 363 IEKRQGRRVER------------ERLDGFEPTETAPAAPAGHGGVKGRRKSRKDKLREAA 410

Query: 420 IPLK 423
              +
Sbjct: 411 AARQ 414


>gi|157818683|ref|NP_001100290.1| probable ATP-dependent RNA helicase DDX10 [Rattus norvegicus]
 gi|149041670|gb|EDL95511.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 (predicted) [Rattus
           norvegicus]
          Length = 874

 Score =  133 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 124/446 (27%), Positives = 211/446 (47%), Gaps = 14/446 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P +  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +             LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +++  
Sbjct: 131 LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINN 190

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +            N+++LV+DEADR+LDMGF   +  I   +P  RQTL
Sbjct: 191 INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTL 250

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L++P+ + V+  +  +            +   +   +      
Sbjct: 251 LFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELH-QKISVLFSFLR 309

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA--IHGNIDQRSRMKILSNFKEGTIQLM 299
               K  I+F +  K V  L     +    +    +HG   Q  RM++ + F      ++
Sbjct: 310 SHLTKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVL 369

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   + + +  
Sbjct: 370 FATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQGM-- 427

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +++L++KKV      ++    P + ID+      R  + + Q     +R ++ + S    
Sbjct: 428 VQQLLQKKVPVKEIKIN----PEKLIDV----QKRLESFLAQDQDLKERAQRCFVSYIRS 479

Query: 420 IPLKESEKISKLQQDIQENDADSLGF 445
           + L + +++  + +      A SLG 
Sbjct: 480 VYLMKDKEVFDVNKLPITEYALSLGL 505


>gi|325497405|gb|EGC95264.1| ATP-dependent RNA helicase DbpA [Escherichia fergusonii ECD227]
          Length = 457

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 129/401 (32%), Positives = 211/401 (52%), Gaps = 10/401 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY+  TP+Q   +P +L   D+   A+TG+GKTA+F L +L 
Sbjct: 4   FSSLNVLPAAQLTNLNELGYLTMTPVQAAALPAILAGKDIRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  HIDATLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGIQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + +  +  LV+DEADRMLDMGF   I  +    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLEALHTLVMDEADRMLDMGFSDAIDEVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   S     L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLTIEIDSTDALPPVEQHFYETSSSGKISLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L   G S  A+HG+++QR R + L  F  G+++++V
Sbjct: 237 SVYQPSSCVVFCNTKKDCQLVCDALNDVGQSAIALHGDLEQRDRDQTLVRFANGSVRILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG+ G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGKSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDW-LNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
             +++ K++W +   ++++ P   ++     +  +K    P
Sbjct: 357 SDMLQLKLNWQMPPAVTTIVPLAAEMATLCIDGGKKAKMRP 397


>gi|325001026|ref|ZP_08122138.1| DEAD/DEAH box helicase domain protein [Pseudonocardia sp. P1]
          Length = 416

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 129/368 (35%), Positives = 191/368 (51%), Gaps = 5/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGL   +V ++   G+  P P+Q  T+P  L   D+ G  QTG+GKT +F L +L 
Sbjct: 5   SFAELGLPEALVKSLAAQGFTAPFPVQAATLPDTLAGRDLLGRGQTGSGKTLAFGLALLA 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +   RAR   P  L+L PTRELA QV D         NL V  ++GG+    Q  +L R
Sbjct: 65  RIAGDRARSTAPLGLVLVPTRELAGQVVDVLTPLAAAVNLRVTAVVGGLSMNKQVAELRR 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+L+ TPGR+ DH  +G   ++ + I  +DEADRM DMGF+P ++ I    P   Q L
Sbjct: 125 GIDLLVATPGRLTDHLQQGTCDLSEVTITALDEADRMADMGFLPQVRGILDRTPSDGQRL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  E+  +    L +P    V  P+++ +T+EH  +        K    + + + 
Sbjct: 185 LFSATLDGEVDTLVRRHLTDPVTRSVAPPTASVDTMEHHVLVVG-----KDDRSRVIAEI 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K     +   L +QG +   +HG   Q  R + L  F+ G + +++A
Sbjct: 240 AAREGRTIMFVRTKHGADRMVRVLRRQGVAAGPLHGGRSQNQRNRALDEFRTGEVPVLIA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ I DVG V + D P   + Y+HR GRT RAG  G   TL A E    +D + 
Sbjct: 300 TDVAARGIHIDDVGLVVHVDPPADPKAYLHRAGRTARAGEEGVVVTLSAPEQRAEVDLLT 359

Query: 362 KLIEKKVD 369
           K    + +
Sbjct: 360 KQAGVRPE 367


>gi|324113196|gb|EGC07171.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
          Length = 463

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 129/401 (32%), Positives = 211/401 (52%), Gaps = 10/401 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY+  TP+Q   +P +L   D+   A+TG+GKTA+F L +L 
Sbjct: 10  FSSLNVLPAAQLTNLNELGYLTMTPVQAAALPAILAGKDIRVQAKTGSGKTAAFGLGLLQ 69

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 70  HIDATLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGIQRDSLQ 126

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + +  +  LV+DEADRMLDMGF   I  +    P +RQT
Sbjct: 127 HAPHIIVATPGRLLDHLQKGTVSLEALHTLVMDEADRMLDMGFSDAIDEVIRFAPASRQT 186

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   S     L Q L 
Sbjct: 187 LLFSATWPEAIAA----ISGRVQRDPLTIEIDSTDALPPVEQHFYETSSSGKISLLQRLL 242

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L   G S  A+HG+++QR R + L  F  G+++++V
Sbjct: 243 SVYQPSSCVVFCNTKKDCQLVCDALNDVGQSAIALHGDLEQRDRDQTLVRFANGSVRILV 302

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG+ G A +  A E+ +  + I
Sbjct: 303 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGKSGLAISFCAPEEAQRANII 362

Query: 361 EKLIEKKVDW-LNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
             +++ K++W +   ++++ P   ++     +  +K    P
Sbjct: 363 SDMLQLKLNWQMPPAVTTIVPLAAEMATLCIDGGKKAKMRP 403


>gi|218548978|ref|YP_002382769.1| ATP-dependent RNA helicase DbpA [Escherichia fergusonii ATCC 35469]
 gi|218356519|emb|CAQ89142.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia
           fergusonii ATCC 35469]
          Length = 457

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 129/401 (32%), Positives = 211/401 (52%), Gaps = 10/401 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY+  TP+Q   +P +L   D+   A+TG+GKTA+F L +L 
Sbjct: 4   FSSLNVLPAAQLTNLNELGYLTMTPVQAAALPAILAGKDIRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  HIDATLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGIQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + +  +  LV+DEADRMLDMGF   I  +    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLEALHTLVMDEADRMLDMGFSDAIDEVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   S     L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLTIEIDSTDALPPVEQHFYETSSSGKISLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L   G S  A+HG+++QR R + L  F  G+++++V
Sbjct: 237 SVYQPSSCVVFCNTKKDCQLVCDALNDVGQSAIALHGDLEQRDRDQTLVRFANGSVRILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG+ G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGKSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDW-LNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
             +++ K++W +   ++++ P   ++     +  +K    P
Sbjct: 357 SDMLQLKLNWQMPPAVTTIVPLAAEMATLCIDGGKKAKMRP 397


>gi|239980958|ref|ZP_04703482.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291452821|ref|ZP_06592211.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291355770|gb|EFE82672.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
          Length = 789

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 148/454 (32%), Positives = 225/454 (49%), Gaps = 16/454 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LGL   VV  +   G  KP PIQ  TIP  L   D+ G  +TG+GKT SF LP+L
Sbjct: 72  VTFASLGLPEGVVRKLAQNGVTKPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLL 131

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  G    + PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LE
Sbjct: 132 ASLAGGHTEKKKPRGVILTPTRELAMQVADALQPYGDVLGLRMKVVCGGTSMGNQIYALE 191

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+ D  NRG   + NIEI ++DEAD+M D+GF+P +  +   VP   Q 
Sbjct: 192 RGVDILVATPGRLRDIINRGACSLENIEIAILDEADQMSDLGFMPEVTELLDQVPEGGQR 251

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM +E+  + + +L+NP   EV+       T+ H  +       K          
Sbjct: 252 MLFSATMENEISSLVKRYLKNPVSHEVDAAQGAVTTMSHHILIV-----KPRDKAPVTGA 306

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   +     +   L + G    A+HG + Q +R + L++FK+G + ++V
Sbjct: 307 IAARKGRTIIFVRTQLGADRVAEQLRESGVKADALHGGMTQGARTRTLADFKDGHVNVLV 366

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L      +    I
Sbjct: 367 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSLSLPHQRRQ---I 423

Query: 361 EKLIEKK-VDWLNGDLSS---LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            +L+E   VD     +      +P + +I  A+     + +     +   +R   + + Q
Sbjct: 424 FRLMEDAGVDATRHIVGGSGVFDPEVAEITGARSLTEVQADSADNSAKQAEREVGDLTRQ 483

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNMP 450
                 + +E    L+++ +   A +   RG+ P
Sbjct: 484 LERATRRAAE----LREEAERLTARAARERGDDP 513


>gi|303277179|ref|XP_003057883.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460540|gb|EEH57834.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 532

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 122/367 (33%), Positives = 202/367 (55%), Gaps = 3/367 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L P V  A+   GY  PTPIQ K IP+ L   DV  +A+TG+GKTA+F++P+L  
Sbjct: 82  FEAMDLLPDVFRAIKRKGYRIPTPIQRKAIPVALSGADVVAMARTGSGKTAAFLIPVLHK 141

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +    R ++L PTRELA Q     ++  K  +L    ++GG   EAQ + L   
Sbjct: 142 LRAHSLKAGA-RAIVLSPTRELALQTFKFAQELSKFTDLRCVCIVGGDSMEAQFEDLATN 200

Query: 123 ADVLICTPGRILDHFNRGKL-LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            D+ + TPGR+L H        + +++ +V+DEADR+L+MGF   +++I   V   RQTL
Sbjct: 201 PDLYVATPGRLLHHVEEIDGLTIRSVQHVVLDEADRLLEMGFSDQLRDIMRQVSDVRQTL 260

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM  +L +     L++P+ I ++     ++ +   F        K   LL  L + 
Sbjct: 261 LFSATMPSQLAEFVRVGLRDPQVIRLDAEMKISDDLRLSF-VVTRADEKIPMLLYILREV 319

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  ++F   + +V  L   LE++G    A++G++D  +R   +  F+    +++V 
Sbjct: 320 IPDKQQTVVFTATRHHVELLMAVLEEEGVKCSAVYGSMDMAARKINIGKFRARKSEVLVV 379

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DIP + +V NFD P R + ++HR+GR  RAGR G A +++ KE++  +  + 
Sbjct: 380 TDVAARGIDIPLLDNVVNFDFPPRPKLFVHRVGRVARAGRSGVAHSILTKEEMGFLVDLH 439

Query: 362 KLIEKKV 368
             + + +
Sbjct: 440 LFLGRSL 446


>gi|264681499|ref|NP_001161137.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Rattus
           norvegicus]
 gi|261263564|gb|ACX55119.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Rattus
           norvegicus]
          Length = 652

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 137/436 (31%), Positives = 222/436 (50%), Gaps = 33/436 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+G TA+F+LP+  
Sbjct: 174 NFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGCTAAFLLPILS 233

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 234 QIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 293

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 294 YGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 353

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 354 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 413

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L + L ++ ++  +IHG+  Q+
Sbjct: 414 WVEELDKRSFLLDLLNATGRDSL--TLVFVETKKGADSLENFLFQERYACTSIHGDRSQK 471

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 472 DREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 531

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           G A +   + ++     +  L+ +    +   L S+         A  +H + N+    K
Sbjct: 532 GLATSFFNERNLNITKDLLDLLVEAKQEVPSWLESM---------AYEHHYKGNSRGRSK 582

Query: 403 ST---GFDRRKKNYSS 415
           S    GF  R    SS
Sbjct: 583 SRFSGGFGARDYRQSS 598


>gi|258543003|ref|YP_003188436.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634081|dbj|BAI00057.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637141|dbj|BAI03110.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640193|dbj|BAI06155.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643250|dbj|BAI09205.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646305|dbj|BAI12253.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649358|dbj|BAI15299.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652344|dbj|BAI18278.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655402|dbj|BAI21329.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-12]
          Length = 400

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 118/400 (29%), Positives = 184/400 (46%), Gaps = 10/400 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLGL P +      AG   PTP+Q   IP +L   DV   A TGTGKTA++ LP+  
Sbjct: 4   SFHDLGLDPALCAYAQQAGMAAPTPVQQAAIPAILDGRDVLVRAPTGTGKTAAYALPLSQ 63

Query: 62  I----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                 +     V +P   ++    ++        +K  K   +T+  L GG     Q  
Sbjct: 64  KLLKSRKPRFVLVLVPTRELVLQVEKVFRTCLGESKKGQKQTPVTLVPLFGGSDRAEQEH 123

Query: 118 K--LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
                 G  +LI TPGR+LD  +     ++    LV+DE DR+    F    + + S +P
Sbjct: 124 FLAQATGRRILIATPGRLLDFVSNRICDLSECGYLVLDEGDRLFSPEFQEDTETLLSYLP 183

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQTL+ SAT  + L+    N L  P  I   +     +       A       +    
Sbjct: 184 SMRQTLVLSATQPESLKSTLLNLLHKPVEI---SIEQAPQKRGPIRQAALFLDPTQKPGF 240

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +   S+      I+F   K     L   L+K   +   +HG+I Q  R   +++F+ G 
Sbjct: 241 IKEFFSRAPKMRSIVFVRTKAEADQLAALLKKARLAAAPLHGDIAQDKRTSTVASFESGR 300

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGLD+P V  V N+DVP++ E Y+HRIGRTGR G  G A TL   +D +
Sbjct: 301 LFILVATDVAARGLDVPSVKQVINYDVPDQPETYLHRIGRTGRGGEKGSALTLCTMDDRQ 360

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
            +  IE     K+  ++ +  +L  P +    ++ + + +
Sbjct: 361 SLRQIEVGAHVKLRIISAE-QALPAPSQPQTASRRSKSVR 399


>gi|192359487|ref|YP_001981876.1| ATP-dependent RNA helicase [Cellvibrio japonicus Ueda107]
 gi|190685652|gb|ACE83330.1| ATP-dependent RNA helicase, DEAD box family [Cellvibrio japonicus
           Ueda107]
          Length = 493

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 126/446 (28%), Positives = 210/446 (47%), Gaps = 7/446 (1%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP- 58
           M  F DL    ++  A+ + GY +PT +Q   IP  L+  ++   ++TG+GKTA+F+LP 
Sbjct: 27  MSAFDDLIADTQLRKAIAEQGYEQPTEVQQAAIPRALEGKNLLVSSKTGSGKTAAFLLPC 86

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  IL +     R  R LIL PTRELA Q+  N +   +  ++ V  + GG     Q   
Sbjct: 87  LQQILAQSAVNPRSTRLLILTPTRELARQIVKNAQSLLRFTSIKVGSICGGEELRYQKAL 146

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  ++++ TPGR+ +H        + +E LV+DEADRMLDMG    +  I       R
Sbjct: 147 LRKNPEIVVATPGRLAEHVAHKSTDFSGLEFLVLDEADRMLDMGLSEDVLKIVESCDAAR 206

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT+    QK   + ++     E         + +       A   K    L   
Sbjct: 207 QTLLFSATLE---QKGLRHLIKQVITGEAEEIYIEDSSNQIEQQMVLADDDKHKERLAVA 263

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L ++   +  I+F N K     L + L        A+HG+I Q  R ++L  F++G  ++
Sbjct: 264 LLNRAEYQKAIVFVNTKVRASQLDNILRYNQLRSTALHGDITQDDRKRVLEAFRQGKTRV 323

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  V  V N ++ +  + Y+HR+GRTGRA + G+A + V+  +     
Sbjct: 324 LVATDVAARGLDIDGVDLVINLEMAHSGDEYLHRVGRTGRADQPGRAVSFVSASEWNLTK 383

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           +IE+ ++  +  +   +  L    +  D  + +               D++K   +    
Sbjct: 384 SIERYLKVSLQTIQ--IPGLEASYKGPDKLKKSGKAYGAKKKAADGKQDKKKGTTAGGAK 441

Query: 419 HIPLKESEKISKLQQDIQENDADSLG 444
            I  K   +  + +   +      +G
Sbjct: 442 KITEKVKVRERERKNIGKRRKPSGIG 467


>gi|164659482|ref|XP_001730865.1| hypothetical protein MGL_1864 [Malassezia globosa CBS 7966]
 gi|159104763|gb|EDP43651.1| hypothetical protein MGL_1864 [Malassezia globosa CBS 7966]
          Length = 557

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 110/437 (25%), Positives = 196/437 (44%), Gaps = 11/437 (2%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            + DL     + P +   +L   + +PTPIQ   + ++L R D+   A TG+GKT +FVL
Sbjct: 118 TWHDLETRWHIEPWLYKNLLKGPWKEPTPIQCGAMSVMLDRRDLLAGAPTGSGKTLAFVL 177

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           P L +L++   +    R +I+ PTRELA Q+    +           LL       + + 
Sbjct: 178 PTLQLLKR--HQKHGFRAVIVSPTRELAQQIFSQLQLLADGEAFRTCLLTNVTKATSDSI 235

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           K ++   ++      +    +    L     +++ +    +           + +    +
Sbjct: 236 KKKKFDILITTPLRLVHSIEHEELDLSQVELLVLDEADRLLELGFLEQTDAILAACTNPS 295

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            +  LFSAT+   ++++++ F+ +  R+ V    S   TIE     T ++  K    L+ 
Sbjct: 296 LRKALFSATLPAGVEELAKTFMVDECRVLVGQKDSATATIEQRLEFTGSEDGK-LHALRA 354

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+Q+       ++F    +    L H L   G  V  IH    +  R  ++  F+ G I 
Sbjct: 355 LIQAGGMQPPVLLFVQSIQRARELFHELVYDGLHVDVIHSERPKAQREAVIQAFRRGDIW 414

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L++ ++L ARG+D   V  V N+D P   ++YIHRIGRTGRAG+ GKA T   K+D  ++
Sbjct: 415 LLICTELMARGIDFHGVNLVINYDFPQTVQSYIHRIGRTGRAGKQGKAITYFTKDDAPYL 474

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPP--LEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            ++  ++ +    +   +  L  P  + K  + +    RK+      ST F RR  N   
Sbjct: 475 KSVVNVMRQSGCDVPEWMLKLPKPSNMLKKQLRKKPVQRKDVRAASGSTSFGRRLANR-- 532

Query: 416 QKSHIPLKESEKISKLQ 432
           Q+  +   +  + SK Q
Sbjct: 533 QRDMVQASKRRQKSKPQ 549


>gi|113971087|ref|YP_734880.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113885771|gb|ABI39823.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 461

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 136/369 (36%), Positives = 206/369 (55%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY + T +Q + IPL L+  D+   AQTGTGKTASF LP+L
Sbjct: 1   MKFDTLGLSSPILNAIAECGYQQLTQVQQQVIPLALEGKDIMACAQTGTGKTASFALPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K  +   + R L++ PTRELA QV  N +KY +   L    + GG     Q K +E
Sbjct: 61  EQLSKQPSDKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+ D   +  L ++ +  LVIDEADRMLD+GF+  I+ +  L+    QT
Sbjct: 121 QGVDILVATPGRLFDIIGQFNLDLSTVTTLVIDEADRMLDLGFVRDIEKVKRLIATEHQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT +D +++                  +   T        Y    ++ A L   L 
Sbjct: 181 MLFSATYSDAVKQ----LSHKMLNQPEWVNVAENATASTVEQLVYRVDKRRKAELLSELV 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  ++F + K+   +L   L   G S    HG+  Q +R ++L +FK G ++++V
Sbjct: 237 GRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N ++P  AE+Y+HRIGRTGRAG  G+A + V+  D + +  I
Sbjct: 297 ATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEI 356

Query: 361 EKLIEKKVD 369
           E LI + + 
Sbjct: 357 EALIGQTLP 365


>gi|320106012|ref|YP_004181602.1| DEAD/DEAH box helicase domain-containing protein [Terriglobus
           saanensis SP1PR4]
 gi|319924533|gb|ADV81608.1| DEAD/DEAH box helicase domain protein [Terriglobus saanensis
           SP1PR4]
          Length = 501

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 133/406 (32%), Positives = 203/406 (50%), Gaps = 36/406 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  +S K+   +    +V PTP+Q K IP  L+  DV   A TGTGKT SF++PM+
Sbjct: 31  VQFNDFNISEKLKQRLAANNFVNPTPVQAKAIPPALEGRDVLATAATGTGKTLSFLIPMI 90

Query: 61  TILEKG----------RARVRMPRTL----------------------ILEPTRELAAQV 88
             ++            + +   P                         IL PTRELA QV
Sbjct: 91  ERMDANPLAALVQQVAQEQAPQPPQYGRQRGGRNNPPPRGPRAPIRALILLPTRELAMQV 150

Query: 89  ADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIE 148
            D + K   N      L+ GG+   AQ   L RG  +++ TPGR+ D+  R ++ +NN+E
Sbjct: 151 LDAYAKIVPNAKQDSVLVCGGLSEGAQLDALRRGPRLVVATPGRLEDYLKRREINLNNVE 210

Query: 149 ILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN 208
           +LV+DE DRMLDMGF+P I+ I   +P TRQT+ +SAT+   + ++  +++ NP RI++ 
Sbjct: 211 MLVLDEVDRMLDMGFLPAIRRIVGALPKTRQTMCYSATLDANITEIVRDYVSNPIRIQIG 270

Query: 209 TPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268
           T S   E +E                        +   + ++F   K     +   LEK 
Sbjct: 271 TTSKPNERVELRAFTVMQDQKLSLLDQLL----GEHAGSYLVFSRTKHGADRIAKKLEKL 326

Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328
           G     IHG+  Q  R   L +F  G  +++VA+D+AARG+DI  + HV N+D+PN +++
Sbjct: 327 GHETDVIHGDRSQSQRTAALKSFAMGRSRVLVATDVAARGIDIQHIAHVVNYDLPNGSDD 386

Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
           ++HRIGRTGRA   G A T V  ++      +E+ ++    W   D
Sbjct: 387 FVHRIGRTGRASASGVATTFVMPQERSDARKLERELKISFKWAEAD 432


>gi|291244806|ref|XP_002742284.1| PREDICTED: eukaryotic translation initiation factor 4A-like
           [Saccoglossus kowalevskii]
          Length = 425

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 128/379 (33%), Positives = 206/379 (54%), Gaps = 7/379 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F ++ L   ++  +   G+ KP+ IQ + I    +  DV   AQ+GTGKTA+F + +L 
Sbjct: 51  NFDNMNLKEDLLRGIYAYGFEKPSAIQQRAIIPCCKGRDVIAQAQSGTGKTATFSIAILQ 110

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            LE  R   +    LIL PTRELA Q+       G          IGG       +KLE 
Sbjct: 111 QLEITRMSSQA---LILAPTRELAQQIQKVVIALGDYMGAQCHACIGGTNVREDMRKLES 167

Query: 122 GADVLICTPGRILDHFNRGKL--LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           G  V++ TPGR+ D  NR      +++I+I V+DEAD ML  GF   I ++  L+P + Q
Sbjct: 168 GQHVVVGTPGRVHDMINRRAPLSDVSDIKIFVLDEADEMLSRGFKDQIYDVFRLLPHSVQ 227

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L     
Sbjct: 228 VILLSATMPVDVLEVTKKFMRDPIRILVRKEELTLEGIRQFYINVEREEWKLDTLCDL-- 285

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IF N ++ V  L   ++ + F+V ++HG++DQ+ R  I+  F+ G+ +++
Sbjct: 286 YETLTITQAVIFSNTRRKVDWLTEKMQGRDFTVSSLHGDMDQKERDIIMREFRSGSSRVL 345

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   + ++D++ +  
Sbjct: 346 ITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFMTEDDVRTLRD 405

Query: 360 IEKLIEKKVDWLNGDLSSL 378
           IE+    +VD +  +++ L
Sbjct: 406 IEQFYNTQVDEMPMNVADL 424


>gi|301120023|ref|XP_002907739.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262106251|gb|EEY64303.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 639

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 127/388 (32%), Positives = 199/388 (51%), Gaps = 12/388 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +FA+  L P+V+  +    Y KPTP+Q  +IP+ L   D+   AQTG+GKT  F+ P   
Sbjct: 165 EFAEEQLGPEVIRNLELCKYSKPTPVQKYSIPIGLAGRDMMACAQTGSGKTGGFLFPTLA 224

Query: 60  ---------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                       +  GR+R   P  LIL PTRELA+Q+ D  +K+     +   ++ GG 
Sbjct: 225 AMLRVGGTPPPDVGHGRSRKIFPAGLILSPTRELASQIHDEAKKFCYCTGIAPVVIYGGA 284

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++LERG D+L+ TPGR++D   RG++ ++ I  L++DEADRMLDMGF P I+ I
Sbjct: 285 EVGRQLRELERGCDLLVATPGRLVDLMERGRISLSCIRFLILDEADRMLDMGFEPQIRRI 344

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  R+   F  + T   +            I +      + + +      Y +   
Sbjct: 345 VEQEDMPRERQTFMFSATFPCEIQRLASDFLRDYIFLTVGRVGSASKDVKQTVEYIEQYD 404

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K   L + L         ++F   K+    L   L ++GF   +IHG+  QR R + L++
Sbjct: 405 KEDYLVRFLNQVQDG-LILVFVETKRGADFLEDMLCREGFPATSIHGDRSQREREQALAS 463

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           FK G   ++VA+D+AARGLDI  V  V NFD+PN  ++Y+HRIGRTGR G  G A +++ 
Sbjct: 464 FKSGRTPVLVATDVAARGLDIDGVTQVINFDLPNNIDDYVHRIGRTGRVGNVGYALSMMN 523

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           +++      + +L+ +    +   L  +
Sbjct: 524 EKNRNIAREMYELMAENGQEIPAFLDQM 551


>gi|114048321|ref|YP_738871.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113889763|gb|ABI43814.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 461

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 136/369 (36%), Positives = 206/369 (55%), Gaps = 4/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ A+ + GY + T +Q + IPL L+  D+   AQTGTGKTASF LP+L
Sbjct: 1   MKFDTLGLSSPILNAIAECGYQQLTQVQQQVIPLALEGKDIMACAQTGTGKTASFALPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K  +   + R L++ PTRELA QV  N +KY +   L    + GG     Q K +E
Sbjct: 61  EQLSKQPSDKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVE 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G D+L+ TPGR+ D   +  L ++ +  LVIDEADRMLD+GF+  I+ +  L+    QT
Sbjct: 121 QGVDILVATPGRLFDIIGQFNLDLSTVTTLVIDEADRMLDLGFVRDIEKVKRLIATEHQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT +D +++                  +   T        Y    ++ A L   L 
Sbjct: 181 MLFSATYSDAVKQ----LSHKMLNQPEWVNVAENATASTVEQLVYRVDKRRKAELLSELV 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  +  ++F + K+   +L   L   G S    HG+  Q +R ++L +FK G ++++V
Sbjct: 237 GRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N ++P  AE+Y+HRIGRTGRAG  G+A + V+  D + +  I
Sbjct: 297 ATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEI 356

Query: 361 EKLIEKKVD 369
           E LI + + 
Sbjct: 357 EALIGQTLP 365


>gi|297806937|ref|XP_002871352.1| dead box RNA helicase [Arabidopsis lyrata subsp. lyrata]
 gi|297317189|gb|EFH47611.1| dead box RNA helicase [Arabidopsis lyrata subsp. lyrata]
          Length = 558

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 124/476 (26%), Positives = 206/476 (43%), Gaps = 31/476 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F    LSP  +  ++DAG+   T +Q  T+PL+LQ  D+   A+TGTGKT +F+LP    
Sbjct: 77  FDQFPLSPLSLKGIVDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 136

Query: 59  -MLTILEKGRARVRMPRTLILEPTRE--LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            + +       R      L++ PTRE    A    N             ++ G      Q
Sbjct: 137 VIKSPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQ 196

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIE---ILVIDEADRMLDMGFIPYIQNITS 172
            +  +    +L+ TPGR+ DH +        +    +LV+DEAD +LDMGF   I+ I +
Sbjct: 197 RRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIA 256

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY----AQY 228
            VP  RQT LFSAT+ +E++++    L+              ET +            ++
Sbjct: 257 AVPKQRQTFLFSATVPEEVRQMCHVALKRDHEFVNCVQEGAGETHQKVSQMYMIASLDRH 316

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
                 L +   + +     IIFC        +   L K   +V  IH    Q  R ++ 
Sbjct: 317 FSLLYGLLKKHIADNVGYKVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVS 376

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             F++    ++V SD++ARG+D PDV  V    +P+  E YIHR+GRTGR G+ G+   L
Sbjct: 377 DEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLL 436

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           +A  +   + +++         L    SSL PP++   + +         +  K   +  
Sbjct: 437 LAPWEEYFLSSVKD--------LPITKSSL-PPIDHEAVKKVQKGLTQVEMTNKEAAYQA 487

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
               Y SQK     +++ ++ +L  +   +         ++P  +     GK+  K
Sbjct: 488 WLGYYKSQKKI--ARDTTRLVELANEFSRS------MGLSIPPAIPINVLGKMGLK 535


>gi|302506487|ref|XP_003015200.1| hypothetical protein ARB_06323 [Arthroderma benhamiae CBS 112371]
 gi|291178772|gb|EFE34560.1| hypothetical protein ARB_06323 [Arthroderma benhamiae CBS 112371]
          Length = 940

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 125/406 (30%), Positives = 200/406 (49%), Gaps = 41/406 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+P ++ A+   G+  PTPIQ KTIPL+L   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 94  FQAMGLNPTLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 153

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 154 LRNHSTKVGA-RGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMASN 212

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I   V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 213 PDIIIATPGRFLHLKVEMNLDLSSIRYAVFDEADRLFEMGFAAQLTEILHALPTSRQTLL 272

Query: 183 FSATMTDELQKV----------------------------------------SENFLQNP 202
           FSAT+   L +                                                 
Sbjct: 273 FSATLPKSLVEFARAGLQEPTLIRLDADSKISPDLQSAFFTVKSADKEGALLHILHDLIK 332

Query: 203 KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLC 262
                      A+          ++  K+  +         T  + I+F   K +V  + 
Sbjct: 333 IPTGETEAGKLAKKEAQEGKQGTSKKRKRVDMKGPGTHGTPTEHSTIVFVATKHHVEYIA 392

Query: 263 HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322
           + L   GF+V   +G+++Q +R   + NF+ G   ++V +D+AARG+DIP + +V N+D 
Sbjct: 393 NLLRHSGFAVSYAYGSLNQTARKIQVQNFRAGISNILVVTDVAARGIDIPVLANVINYDF 452

Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           P++ + YIHR+GRT RAG+ G +++LV   D  ++  ++  + +++
Sbjct: 453 PSQPKIYIHRVGRTARAGQKGWSYSLVRDSDAPYLIDLQLFLGRRL 498


>gi|229102742|ref|ZP_04233441.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-28]
 gi|229115630|ref|ZP_04245035.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus Rock1-3]
 gi|228667772|gb|EEL23209.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus Rock1-3]
 gi|228680674|gb|EEL34852.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-28]
          Length = 389

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 104/367 (28%), Positives = 186/367 (50%), Gaps = 11/367 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P +  A   AG+ + T IQ + IP +L+  DV   + TGTGKT +++LP+L  +      
Sbjct: 7   PFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI---NPE 63

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           V+ P+ +IL PTREL  Q+ +  +K+    +++ A LIGG   + Q +KL++   V++ +
Sbjct: 64  VKQPQVVILAPTRELVMQIHEEVQKFTAGTDISGASLIGGADIKRQVEKLKKHPKVIVGS 123

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGRIL+     KL M+ ++ +V DE D+++    +   Q++       RQ + FSATMT 
Sbjct: 124 PGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAAQDVIKSTMRDRQLVFFSATMTK 183

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
             +  + +    P+ + V    S +         TY    ++                 +
Sbjct: 184 AAEDAARDLAVEPQLVRVTRAESKSLVE-----HTYIICERREKNDYVRRIMHMGDVKAV 238

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
            F N    +  +   L+ +     A+H    ++ R   +  F+ G +++++A+D+AARG+
Sbjct: 239 AFLNDPFRLDEITQKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGI 298

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE---K 366
           DI D+ HV + ++P+  + YIHR GRTGR G+ G   +LV +++ + +    K +     
Sbjct: 299 DIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERKLLQFAKKLGIVFT 358

Query: 367 KVDWLNG 373
           K +  NG
Sbjct: 359 KQEMFNG 365


>gi|229174959|ref|ZP_04302479.1| ATP-dependent RNA helicase yqfR [Bacillus cereus MM3]
 gi|228608627|gb|EEK65929.1| ATP-dependent RNA helicase yqfR [Bacillus cereus MM3]
          Length = 436

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 121/378 (32%), Positives = 205/378 (54%), Gaps = 12/378 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L 
Sbjct: 5   TFTQYDFKPFLIDAVRELRFTEPTGIQKKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLN 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNF----EKYGKNYNLTVALLIGGIPFEAQNK 117
            +   R  V++    I  PTRELA Q+ +      +   ++  +T   LIGG   +   +
Sbjct: 65  RINASREEVQLV---ITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIE 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL++   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I S +P  
Sbjct: 122 KLKKQPHIVVGTPGRIKDLVEAQALFVHKANTIIVDEADLMLDMGFIHDVDKIASRMPRN 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +     +    L  
Sbjct: 182 LQMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKH---RNKIDLVN 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q      ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 239 KMLLQFKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + +L
Sbjct: 359 DSLEK--QRHIEFKHVEL 374


>gi|307193157|gb|EFN76062.1| ATP-dependent RNA helicase DDX54 [Harpegnathos saltator]
          Length = 772

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 124/366 (33%), Positives = 199/366 (54%), Gaps = 2/366 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  + L+  V+  +L  GY  PTPIQ KTIPL L+  D+  +A+TG+GKTA F++P+   
Sbjct: 37  FQSMALTFPVLKGILKRGYKIPTPIQRKTIPLALEGRDIVAMARTGSGKTACFLIPLFEK 96

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  A+++GG   + Q   +   
Sbjct: 97  LKTRLAKTGA-RALILSPTRELALQTLKFIKELGKFTGLKAAVILGGDSIDDQFSAIHGN 155

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR L       L + N+E +V DEADR+ +MGF   I  I + +P +RQTLL
Sbjct: 156 PDIIVATPGRFLHICVEMDLQLKNVEYVVFDEADRLFEMGFGEQIHEIVNRLPESRQTLL 215

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L   ++  L +P  + ++  S   E +E  F  T     K   LL  L +  
Sbjct: 216 FSATLPKVLVDFAKAGLSDPVLLRLDVESKLPEGLELSF-ITCRPEEKLAVLLCLLKRVI 274

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF     +V  +   L+K       I+ N+D  +R    + F+ G  ++++ +
Sbjct: 275 KEDSQIIIFAETMHHVEYIHQILDKAKIINTFIYSNLDPSARKINTAKFQTGKAKVLIVT 334

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP +  V NF+ P +++ ++HR+GR  RAGR G A+ +V+ ++  ++  +  
Sbjct: 335 DVAARGIDIPHLDCVINFNFPAKSKLFVHRVGRCARAGRAGTAYNIVSVDEYPYLLDLHL 394

Query: 363 LIEKKV 368
            + + +
Sbjct: 395 FLGRPL 400


>gi|213402583|ref|XP_002172064.1| ATP-dependent RNA helicase dbp10 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000111|gb|EEB05771.1| ATP-dependent RNA helicase dbp10 [Schizosaccharomyces japonicus
           yFS275]
          Length = 854

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 130/402 (32%), Positives = 207/402 (51%), Gaps = 36/402 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  +GLS  ++ A+   G+  PTPIQ KTIP VL   DV G+A+TG+GKTA+FV+PM+ 
Sbjct: 66  NFQSMGLSTTMLRAITKKGFKAPTPIQRKTIPFVLDGRDVVGMARTGSGKTAAFVIPMIE 125

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+  RA+    R +IL P+RELA Q     + + K+ NL  A+++GG   E Q   L  
Sbjct: 126 KLKASRAQSGS-RAIILSPSRELALQTMKVVKDFSKDTNLRTAVIVGGEGLEEQFSILTN 184

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR L      KL + +IE +V DEADR+ +MGF   +  I   +P +RQTL
Sbjct: 185 KPDIIVATPGRFLHLKVEMKLELGSIEYVVFDEADRLFEMGFAAQLTEILHGLPSSRQTL 244

Query: 182 LFSATMTDELQKVSE-----------------------------------NFLQNPKRIE 206
           LFSAT+   L + ++                                     L   + + 
Sbjct: 245 LFSATLPKNLVEFAKAGLQEPILVRLDVESKVSSDLQSAFFSVKTAEREAALLYVLQEVI 304

Query: 207 VNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLE 266
                   +  E    A   +  K+               + I+F   K +V  +   L+
Sbjct: 305 HLRLQEELKPAELPSQAENPKKRKRLLEHTLKKPETAASDSTIVFVPTKHHVEYITEMLK 364

Query: 267 KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
           + G+ V  I+G++DQ +R   ++NF+ G   ++V +D+AARG+DIP + +V N+D P + 
Sbjct: 365 QAGYGVSRIYGSLDQTARKNEITNFRLGVSNVLVVTDVAARGIDIPLLSNVVNYDFPAQP 424

Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           + ++HR+GRT RAGR G A+T V  ED  ++  ++  + + +
Sbjct: 425 KIFVHRVGRTARAGRTGWAYTFVRAEDAGYLLDLKLFLNRDL 466


>gi|109092953|ref|XP_001085678.1| PREDICTED: eukaryotic initiation factor 4A-I-like isoform 7 [Macaca
           mulatta]
          Length = 406

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 201/378 (53%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 33  SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E     ++  + L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 93  QIEL---DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 149

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q 
Sbjct: 150 EAPHIIMGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 209

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L      
Sbjct: 210 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGICQFYINVEREEWKLDTLCDL--Y 267

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 268 ETLTITQAVIFINTQRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 327

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V +ED + +  I
Sbjct: 328 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 387

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      ++ +  +++ L
Sbjct: 388 ETFYNTSIEEMPLNVADL 405


>gi|71406310|ref|XP_805705.1| nucleolar RNA helicase II [Trypanosoma cruzi strain CL Brener]
 gi|70869212|gb|EAN83854.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
          Length = 660

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 108/386 (27%), Positives = 168/386 (43%), Gaps = 19/386 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F+D  L P  V A+   G     P+Q  T   +++  +V   A+TG+GKT +F +P+   
Sbjct: 52  FSDFDLLPNTVEALKSQGITALFPVQALTYEAIMKGSNVLVQARTGSGKTLAFGIPILEK 111

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
               T   +   R R P  +I  PTRELA QV D      K + +T          + + 
Sbjct: 112 LARTTKSNEQPVRGRGPAAVIFCPTRELAIQVRDVIAGISKGFVVTALYGGVAYSTQERA 171

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV-- 174
                G DV++ TPGR  D   +  L  + ++++ +DEAD MLD+GF   I+ +   V  
Sbjct: 172 L--YSGVDVVVATPGRAKDFLEKRTLCFDRVKVVCLDEADHMLDIGFKDDIELLLQKVAE 229

Query: 175 -------PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
                      QTLLFSAT+ + +   S           V   +  A      +      
Sbjct: 230 QNGSTEGNPNHQTLLFSATVPEWVHTCSFIPRNKEFIDMVGQGTMRAANTIKFYRRKCHF 289

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
               C L   +          ++F N KK   +L  +  K         G++ Q  R   
Sbjct: 290 SEVSCMLADLVKVYSGRHGRTLVFTNTKKECHDLSINNTKLDSQCLH--GDMQQEQREST 347

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           + +F++    +++A+D+AARGLD+P V  V     P   + +IHR GRTGRAGR G    
Sbjct: 348 MKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVL 407

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNG 373
           L   +D   ++ IE+  + K + L  
Sbjct: 408 LHQPKDEYIVERIERHAKIKFEVLPA 433


>gi|327292761|ref|XP_003231078.1| ATP-dependent RNA helicase eIF4A [Trichophyton rubrum CBS 118892]
 gi|326466708|gb|EGD92161.1| ATP-dependent RNA helicase eIF4A [Trichophyton rubrum CBS 118892]
          Length = 396

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 128/377 (33%), Positives = 208/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L+ +++  V   G+ +P+ IQ + I  V++  DV   AQ+GTGKTA+F +  L 
Sbjct: 24  SFDAMNLNSELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++  + LIL PTRELA Q+       G   N+     IGG       K L+ 
Sbjct: 84  KVDTN---LKACQALILAPTRELAQQIQKVVVAIGDFMNVDCHACIGGTNVREDMKALQD 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I   +P + Q +
Sbjct: 141 GPQVVVGTPGRVHDMIQRRVLKTDHIKMFVLDEADEMLSRGFTEQIYDIFQFLPQSTQVV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 201 LLSATMPPDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L+ + F+V A+HG+++Q  R  I+  F+ G+ ++++A
Sbjct: 259 TVTITQAVIFCNTRRKVDWLTDKLQARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 379 QFYSTQIEEMPMNVADL 395


>gi|300858427|ref|YP_003783410.1| hypothetical protein cpfrc_01010 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685881|gb|ADK28803.1| hypothetical protein cpfrc_01010 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206138|gb|ADL10480.1| Putative superfamily II DNA/RNA helicase [Corynebacterium
           pseudotuberculosis C231]
 gi|302330695|gb|ADL20889.1| Putative Superfamily II DNA and RNA helicase [Corynebacterium
           pseudotuberculosis 1002]
          Length = 435

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 137/434 (31%), Positives = 216/434 (49%), Gaps = 12/434 (2%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI-LEKGRARVRMPR 74
           +   G   P PIQ   IP  L+  DV G   TG+GKT +F LPM+    + G +    PR
Sbjct: 2   LNRQGITAPFPIQEAAIPDALKGRDVLGRGPTGSGKTFTFGLPMIAALAKTGASLPGHPR 61

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            LIL PTRELAAQV +  ++      L +  ++GG+             D+L+ TPGR  
Sbjct: 62  GLILVPTRELAAQVRERLDEPAAALGLRILDVVGGVSINRHITAFAAPVDILVATPGRAQ 121

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D  N  KL ++ + I  +DEAD+M DMGF+P +  +  L P   Q LLFSAT+  ++ K+
Sbjct: 122 DLVNNKKLFLDKVLITTLDEADQMADMGFLPQVLKLLELTPRDAQRLLFSATLDGDVNKL 181

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
            E F+ +P        ++  +T+ H  +    + S+   +L+        +   I+F   
Sbjct: 182 VERFMHDPVTHSTAEVAAAVDTMTHYRLHVGDRDSRNDVVLR----IAGRIGKTIMFMRT 237

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           K  V      L + G +   IHG+ DQ +R   ++ F +G++ ++VA+D+AARG+DI DV
Sbjct: 238 KHGVDRQVKKLRRIGINAVGIHGDKDQNTRTNAITGFSDGSVPVLVATDIAARGIDIGDV 297

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
             V + D P   + Y+HR GRT RAG  G   TLV +E I+ +D +        + L  +
Sbjct: 298 DLVVHVDPPAEHKAYLHRAGRTARAGSSGTVVTLVMEEQIQEVDTLLHKAGVNAESL--E 355

Query: 375 LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQD 434
           +S+ +P L  I  AQ        P         R+KK+ S++ S    ++ ++    Q+ 
Sbjct: 356 VSANSPELVHITGAQKITGEPLPPFGAAQPQ-QRQKKSQSTKNSATRRRKPQR----QRT 410

Query: 435 IQENDADSLGFRGN 448
             ++   +  FRG 
Sbjct: 411 ASKSRGSAASFRGK 424


>gi|156088623|ref|XP_001611718.1| DEAD/DEAH box helicase family protein [Babesia bovis]
 gi|154798972|gb|EDO08150.1| DEAD/DEAH box helicase family protein [Babesia bovis]
          Length = 480

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 125/403 (31%), Positives = 180/403 (44%), Gaps = 15/403 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F DLG+   ++          PT IQ   +P     H+V G AQTGTGKT  F  P+L
Sbjct: 67  MSFKDLGVPEWLIQLASAVSIKAPTKIQELCLPAAFSGHNVIGCAQTGTGKTICFCWPIL 126

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L K    V     L+L  +RELA Q+ D F  +G   N+ + + +GG  F  Q+ +LE
Sbjct: 127 VALAKNPYGVFG---LVLTGSRELAFQIGDQFNVFGVQMNIRICVCVGGDDFVEQSLQLE 183

Query: 121 RGADVLICTP----GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
               V+I TP     ++         +   ++ LV DEAD++L   F   +Q I   +P 
Sbjct: 184 ARPHVVIATPGRLAYQVDIKERNIANVFKKVKYLVFDEADKLLHSEFEEPLQQILKCLPT 243

Query: 177 TRQ---TLLFSATMTDELQ-----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
           T     T LFSAT+T  +Q          F                +  ++        +
Sbjct: 244 TNDGRITYLFSATITKAIQELSKSFKGTQFHMFDVTKGQEEQFHELDLKQNYLFLPENVH 303

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
                 L Q    +     GIIF   KK       +LE   F V  IH  + QR R   L
Sbjct: 304 LPYLVHLLQTQLLERETDQGIIFTATKKKCQLTAVALEYLDFKVTCIHSLMKQRKRNACL 363

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           + F+ G  +++VA+DL ARG+DI  V  V N D P   E+YIHR+GRT R+   G A + 
Sbjct: 364 AKFRTGVSKILVATDLIARGIDIQAVSFVVNLDFPRTTEDYIHRVGRTARSKSTGIAISF 423

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
           V + DI+ +  +EK    K++ L  D +     L K+ +A   
Sbjct: 424 VDEFDIEKLKTVEKAANIKLEKLEVDDAQAVKLLNKVSMATQR 466


>gi|91207081|sp|Q2UPY3|IF4A_ASPOR RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|83766239|dbj|BAE56382.1| unnamed protein product [Aspergillus oryzae]
          Length = 421

 Score =  133 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 208/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P+++  V   G+ +P+ IQ + I  +++  DV   AQ+GTGKTA+F +  L 
Sbjct: 49  SFDAMELKPELLRGVYAYGFERPSAIQQRAIKPIIKGSDVIAQAQSGTGKTATFSISALQ 108

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     V+  + LIL PTRELA Q+       G   N+T    IGG       K L  
Sbjct: 109 KLDPN---VKGCQALILAPTRELAQQIQKVVVAIGDFMNITCHACIGGTAVREDMKALGE 165

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G +V++ TPGR+ D   R  L  ++++  ++DEAD ML  GF   I +I  L+P + Q +
Sbjct: 166 GPEVVVGTPGRVHDMIQRRVLKTDHLKQFILDEADEMLSRGFTEQIYDIFQLLPQSTQVV 225

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 226 LLSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 283

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A
Sbjct: 284 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIA 343

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 344 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 403

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 404 QFYSTQIEEMPMNVADL 420


>gi|325119967|emb|CBZ55520.1| hypothetical protein NCLIV_059450 [Neospora caninum Liverpool]
          Length = 434

 Score =  133 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 104/385 (27%), Positives = 168/385 (43%), Gaps = 12/385 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ DAG+  P+ +Q +TIP  +   DV   A++G GKTA FVL +L  
Sbjct: 46  FRDFFLKPELLRAIGDAGFEHPSEVQHETIPHAITGVDVLCQAKSGMGKTAVFVLSILQQ 105

Query: 63  LE--------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
           L           +  V +      E   ++  +     +         V   I       
Sbjct: 106 LNLDASGEEGNTQGVVCLGIAHTRELAFQIKNEFDRFSKYLKNVKCEVVYGGISIQKNID 165

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM-GFIPYIQNITSL 173
             K  +    +LI TPGR+L       L    +   V+DE D+ L+       +QNI   
Sbjct: 166 MLKDPKTTPHILIGTPGRVLALIKGKHLNAEKVAHFVLDECDKCLEKLDMRKDVQNIFMA 225

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
            P  +Q + FSATM  E++ V + F+Q+P  + ++  S         +     +  K   
Sbjct: 226 TPKKKQVMFFSATMNKEIRDVCKRFMQSPVEVFIDDESKLTLHGLLQYYVKLQESEKNR- 284

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L         IIF         L   L +  F   AIH  +DQ  R+     FK 
Sbjct: 285 -KLNDLLDTLEFNQVIIFVKSVSRAQALDRLLTECNFPSIAIHAGLDQEERINRYQQFKN 343

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
              ++MVA+DL  RG+DI  V  V N+D+P+ +++Y+HR+GR GR G  G A T V +++
Sbjct: 344 FEKRIMVATDLFGRGIDIERVNIVINYDMPDSSDSYLHRVGRAGRFGTKGLAITFVASQD 403

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSS 377
           D   ++ ++   E  +  +   + +
Sbjct: 404 DTNVLNDVQTRFEVHIAEMPQSIDA 428


>gi|167387857|ref|XP_001738337.1| spliceosome RNA helicase Bat1 [Entamoeba dispar SAW760]
 gi|167394345|ref|XP_001740939.1| spliceosome RNA helicase Bat1 [Entamoeba dispar SAW760]
 gi|165894738|gb|EDR22621.1| spliceosome RNA helicase Bat1, putative [Entamoeba dispar SAW760]
 gi|165898511|gb|EDR25351.1| spliceosome RNA helicase Bat1, putative [Entamoeba dispar SAW760]
          Length = 419

 Score =  133 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 89/382 (23%), Positives = 171/382 (44%), Gaps = 7/382 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+++ L  +++ A+ D G+  P+ +Q + IP  L + D+   A++G GKTA FV+ +L  
Sbjct: 35  FSNMNLKKEILMAITDCGFEHPSEVQSQVIPKALLKQDILCQAKSGMGKTAVFVISILNQ 94

Query: 63  LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                      V      +    ++   ++     +       T   + G    +     
Sbjct: 95  GLCLGDYVSALVICHTRELALQAQKEFDRMKKRLCEATGKEIPTGTFVGGVEEKKDIEFI 154

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 ++I TPGRI     +  L ++ ++  VIDE D++L       I  I    P  +
Sbjct: 155 KTHKPTIVIGTPGRIASLVRQKALDLSKLDTFVIDECDKVLGSTSEIEIGEIFISSPKEK 214

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT+++  + +   +L+N   + ++          H +        KK   +   
Sbjct: 215 QVMMFSATISETNKGICRKYLKNQLEVFIDDGEKLFLHGLHLYFKKLGDNDKKKTFMD-- 272

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +         I+F    +    L   L++ G+    ++G +DQ  R K    F++G  ++
Sbjct: 273 IIDYIDFNQAIVFAENSERCRVLVKKLKQIGYPCGILYGRMDQEIREKEYQRFRDGESRV 332

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHI 357
           +V++DL  RG+D+  V  V NFD+PN ++ ++HR+GR GR G  G A + +  +ED K +
Sbjct: 333 LVSTDLCGRGIDVAKVNLVVNFDMPNDSDQFLHRVGRAGRFGTKGVAISFIDTEEDDKVL 392

Query: 358 DAIEKLIEKKVDWLNGDLSSLN 379
             ++     ++D L   L  + 
Sbjct: 393 KEVQSRFAVQMDELPSSLKDIP 414


>gi|158293341|ref|XP_314700.4| AGAP008601-PA [Anopheles gambiae str. PEST]
 gi|157016658|gb|EAA10183.4| AGAP008601-PA [Anopheles gambiae str. PEST]
          Length = 611

 Score =  133 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 112/393 (28%), Positives = 202/393 (51%), Gaps = 11/393 (2%)

Query: 2   DFADL--GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           +F  L   +S   + A+ + G+ K T IQ K+IP +L+  D+ G A+TG+GKT +F++P 
Sbjct: 117 EFKSLEGKVSDHTMKAIGEMGFTKMTEIQAKSIPPLLEGRDLIGSAKTGSGKTLAFLIPA 176

Query: 60  LTILEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K R + R    +I + PTRELA Q+    ++    +  T  LL+GG     +N+K
Sbjct: 177 VELIHKLRFKPRNGAGVIVISPTRELAMQIFGVLKELMTYHCQTYGLLMGGASRHTENEK 236

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           LE+G ++++ TPGR +    +    L  N++ L+IDE DR+L++GF   ++ I S++P  
Sbjct: 237 LEKGINIIVATPGRLLDHLKSTPNFLFKNLQCLIIDECDRILEIGFEEDLKQIISILPKK 296

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT +  L+++ +  L++         +    T+           S++  L+  
Sbjct: 297 RQTMLFSATQSSRLEELGKLALKSEPIYVGVDDNKKEATVTGLEQGYIVCPSERRLLVLF 356

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V             V +IHG   Q  R  +   F      
Sbjct: 357 TFLKKNRKKKVMVFFSSCLSVKFHHELFNYIDLPVMSIHGKQKQSKRTSVFFQFCNAETG 416

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH--GKAFTLVAKEDIK 355
           +++ +D+AARGLDIP V  +  +D PN  + YIHR+GRT R G    G A  ++  E++ 
Sbjct: 417 ILLCTDVAARGLDIPAVDWIVQYDPPNDTKEYIHRVGRTAR-GEDLCGHALLMLRPEEVG 475

Query: 356 HIDAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
            +  +++  +  ++        ++ +   LE +
Sbjct: 476 FLKYLKQA-KVPLNEFEFSWSKIADIQLQLENL 507


>gi|88860699|ref|ZP_01135336.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Pseudoalteromonas tunicata D2]
 gi|88817294|gb|EAR27112.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Pseudoalteromonas tunicata D2]
          Length = 431

 Score =  133 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 216/379 (56%), Gaps = 15/379 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGL P ++  + +  Y +PTPIQ + IP VL   D+   A TG+GKTA+F LPML 
Sbjct: 9   NFTELGLIPPLLARLTELEYQQPTPIQAQAIPSVLAGRDLIAGANTGSGKTATFALPMLQ 68

Query: 62  ILEKG--------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIP 111
            L             +      L+L PTRELA QVA++ + Y  ++N  +    + GG+ 
Sbjct: 69  QLYLQQQGKTSVATNKGNYVAGLVLVPTRELATQVANSIKSYAAHFNGAIKTVAVFGGVS 128

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
             AQ + L  G+D+++ TPGR+LD  +   + ++ +  LV+DEADRML +GF   +  + 
Sbjct: 129 VNAQMQALRGGSDIVVATPGRLLDLISSNAIKLDKVSTLVLDEADRMLGLGFTEELSQLL 188

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           +L+P  +QTLLFSAT   ++Q ++++ L NP  I+V +  ++        V   A+    
Sbjct: 189 ALMPAKKQTLLFSATFPLQVQSLTQSLLTNPVEIQVQSSDASTVVQRVFTVNKGAKTE-- 246

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L   L ++   +  +IF N K +  +L   LEK+G S    HG+  Q +R ++L  F
Sbjct: 247 ---LLAHLITEHKWRQALIFVNAKNHCEHLAQKLEKRGISAKVFHGDKGQSARTRVLEEF 303

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G I +++A+D+AARGLDI  +  V N+++P    +Y+HRIGR+GRAG  G A +L+ +
Sbjct: 304 KAGEIDILIATDIAARGLDIEKLPVVINYNLPRSPADYMHRIGRSGRAGEVGLALSLIDQ 363

Query: 352 EDIKHIDAIEKLIEKKVDW 370
           +D  H   IEK  + +++ 
Sbjct: 364 DDYHHFSIIEKKNKIRLER 382


>gi|241953571|ref|XP_002419507.1| ATP-dependent DEAD-box RNA helicase, putative [Candida dubliniensis
           CD36]
 gi|223642847|emb|CAX43102.1| ATP-dependent DEAD-box RNA helicase, putative [Candida dubliniensis
           CD36]
          Length = 667

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 133/393 (33%), Positives = 203/393 (51%), Gaps = 19/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L   +V  +  + + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+
Sbjct: 188 SFTAPPLDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLS 247

Query: 62  ILEKGRA------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                                  P TL++ PTREL +Q+ +  +K+     +   ++ GG
Sbjct: 248 ESYMKGPAPVPESNGAFSSHKVYPTTLVMAPTRELVSQIYEESKKFSYRSWVRACVVYGG 307

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q + ++RG D+L+ TPGR+ D  +RGK+ + NI  LV+DEADRMLDMGF P I+ 
Sbjct: 308 ADIGQQMRNMDRGCDLLVATPGRLKDLLDRGKVSLANIRYLVLDEADRMLDMGFEPQIRY 367

Query: 170 ITSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I    +   
Sbjct: 368 IVDECDMPAVKDRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKILYVE 427

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
               K   L              I+F   K+   NL   L  QGF   AIHG+  Q  R 
Sbjct: 428 DDEKKSVILDLLSANENG---LTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYERE 484

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           K L+ FK G   ++VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A
Sbjct: 485 KALAAFKNGAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIA 544

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
                + +   +  + +L+ +    +   L+ +
Sbjct: 545 TAFFNRNNKNIVKGLVELLSEANQEVPDFLTKV 577


>gi|219120692|ref|XP_002181079.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407795|gb|EEC47731.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 500

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 119/404 (29%), Positives = 190/404 (47%), Gaps = 26/404 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+     ++ ++   G  +PTPIQ++ +P+ L   D+ GIA TG+GKT +F LP++  
Sbjct: 58  FVDMKFPQPILASLKQKGIARPTPIQMQGLPVALAGRDMVGIAFTGSGKTLTFGLPLVMA 117

Query: 63  LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ-- 115
             +   R+ +     P  +IL P+RELA Q  +   +         A          Q  
Sbjct: 118 ALEEELRMPIAPGEGPVGIILAPSRELARQTYELVSELATALTTPPAGDSREKNRYPQLR 177

Query: 116 --------------NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
                             ++G   ++ TPGR+ D   R  L +     + +DEADRMLD+
Sbjct: 178 TQLLIGGESVRDQVQTVQQQGIHCVVATPGRLRDLLKRKALNLMICRYICLDEADRMLDL 237

Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
           GF   +  I +  P  RQTLLFSAT         ++F +      +      A       
Sbjct: 238 GFDEEVGTIMNHFPHQRQTLLFSATFPK----KFQDFARQTLVQPIVVNVGRAGAANLDV 293

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
           +       ++  ++  L   Q T    IIFC +K +V ++   L  +G    +IHG  DQ
Sbjct: 294 IQEVEYVKQEAKIVYLLHCLQKTAPPVIIFCERKGDVDDIHEYLLLKGVQAVSIHGGKDQ 353

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
             R + ++ FK G   +++A+D+AA+GLD   + HV NFD+P   ENY+HRIGRTGR G+
Sbjct: 354 EERNEAITLFKSGQKDVLIATDVAAKGLDFAAIQHVINFDMPTEIENYVHRIGRTGRCGK 413

Query: 342 HGKAFTLVAKE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
            G A T + K  +   +  ++ L+ +    +   L  L+ P E+
Sbjct: 414 TGVATTFINKSCEETTLLDLKGLLREARQRIPPVLLMLDDPREQ 457


>gi|302524385|ref|ZP_07276727.1| cold-shock DEAD-box protein [Streptomyces sp. AA4]
 gi|302433280|gb|EFL05096.1| cold-shock DEAD-box protein [Streptomyces sp. AA4]
          Length = 522

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 143/415 (34%), Positives = 217/415 (52%), Gaps = 19/415 (4%)

Query: 9   SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
            P++V A+ +AG      IQ  T+PL +   D+ G A+TG GKT  F +P+L  ++    
Sbjct: 2   KPEIVKALAEAGIEHTFAIQALTLPLAMAGDDLIGQARTGMGKTLGFGVPLLHRVQVPGD 61

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
               P+ L++ PTREL  QVA++ +  GK+  +    + GG P+E Q + L +G DV+I 
Sbjct: 62  GT--PQVLVVVPTRELCIQVANDLKGAGKHLGIRTLAIYGGRPYEPQIEALRKGVDVVIG 119

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR+LD   +  L++  I  LV+DEAD MLD+GF+P I+ I  +VP  RQT+LFSATM 
Sbjct: 120 TPGRLLDLAEQQHLVLGKIRGLVLDEADEMLDLGFLPDIERILRMVPDERQTMLFSATMP 179

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
             +  ++  FL           +      E      Y  +S     L       +     
Sbjct: 180 GPIITLARTFLN-QPTHIRAEENDAGAIHERTAQFVYRAHSMDKTELIARALQAEGRGLT 238

Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           +IF   K+    +   L ++GF+  A+HG++ Q +R + L  F+ G + ++VA+D+AARG
Sbjct: 239 MIFSRTKRTAQKIADDLVERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLVATDVAARG 298

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           +DI DV HV N+  P   + Y+HRIGRTGRAGR G A TLV  ++      I        
Sbjct: 299 IDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGVAITLVDWDEEARWKLIS------- 351

Query: 369 DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF----DRRKKNYSSQKSH 419
           D LN DL+    P+E    + H  +  +  IP+ + G      R +   S++K  
Sbjct: 352 DTLNLDLAE---PVETYSSSPHLFS--DLGIPEGTKGRLPLSKRTRAGLSAEKEE 401


>gi|125718667|ref|YP_001035800.1| ATP-dependent RNA helicase [Streptococcus sanguinis SK36]
 gi|125498584|gb|ABN45250.1| ATP-dependent RNA helicase, putative [Streptococcus sanguinis SK36]
          Length = 447

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 125/407 (30%), Positives = 189/407 (46%), Gaps = 20/407 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-- 118
            +L++    V+     I  P+RELAAQ+     +        + +       +   +   
Sbjct: 61  QMLDEEADSVQAV---ITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQIGK 117

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTI---ENWLLSTKGRDKNAQIY 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
             +EK +  K            P + K D  Q  + R      +KS 
Sbjct: 355 RELEK-MGIK----------FTPKMIKDDEFQDTYDRDRRANREKSR 390


>gi|70663484|emb|CAJ15141.1| PL10b protein [Platynereis dumerilii]
          Length = 816

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 142/421 (33%), Positives = 218/421 (51%), Gaps = 26/421 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L L   V   ++ + Y KPTP+Q   +P++ ++ D+   AQTG+GKTASF++P+L+
Sbjct: 335 SFAELELGEIVDSNIVLSKYTKPTPVQKHAMPIIKKKRDLMACAQTGSGKTASFLVPVLS 394

Query: 62  ILE------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
            +                 R + P  L+L PTRELA+Q+ +   K+    ++   ++ GG
Sbjct: 395 QMFLDGQPEFIREQNNRNNRKQYPIALVLAPTRELASQIYEEARKFAYRSHVRPCVVYGG 454

Query: 110 IPFEAQNKK-LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
               AQ +   ERG  +L+ TPGR++D   RGK+ +++I  +V+DEADRMLDMGF P I+
Sbjct: 455 ADIGAQMRDLPERGCHLLVATPGRLVDMLERGKIGLDHIRFVVLDEADRMLDMGFEPQIR 514

Query: 169 N----ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
                 T      R+TL+FSAT   E+Q ++ +FL N   + V    ST+E I    V  
Sbjct: 515 RIVEKDTMPPTGDRRTLMFSATFPKEIQILARDFLHNYIFLAVGRVGSTSENITQKVVWV 574

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
                +   L        D++   ++F   KK    L + L  +G+    IHG+  Q+ R
Sbjct: 575 EEPDKRSFLLDLLNASGPDSL--TLVFVETKKGADALDNFLYNEGYPSACIHGDRSQKER 632

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            + L NF+ G   ++VA+ +AARGLDIP+V HV NFD+P+  E Y+HRIGRTGR G  G 
Sbjct: 633 EEALRNFRSGKTPVLVATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL 692

Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           A +    ++   +  +       VD L      + P +E I            P  ++  
Sbjct: 693 ATSFFNDKNKNIVRDM-------VDLLIEAKQEVPPWIESIAYEARTMGGGRRPQNKRFG 745

Query: 405 G 405
           G
Sbjct: 746 G 746


>gi|326924964|ref|XP_003208692.1| PREDICTED: probable ATP-dependent RNA helicase DDX59-like
           [Meleagris gallopavo]
          Length = 625

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 107/398 (26%), Positives = 181/398 (45%), Gaps = 12/398 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F   G    +   + ++GY  PTPIQ++ IP+ L   D+   A TG+GKTA+F+LP++
Sbjct: 209 IEFEHCGFPETLNSNLKNSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVI 268

Query: 61  TILEKGRARVRMPRTLILEPTRE-LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +     +   P  LIL PTRE          E      N+   LL+GG+P   Q  +L
Sbjct: 269 MKV---LNKTETPSALILAPTRELAIQIERQAKELMAGLPNMRTVLLVGGLPLPPQLHRL 325

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   V+I TPGR+L+   +  + ++ I+I+V+DE D ML MGF   + +I   +    Q
Sbjct: 326 KQSVKVIIATPGRLLEILRQSSVQLHGIKIVVVDEVDTMLKMGFQQQVLDILQDISHDHQ 385

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+L SAT+   ++ ++   L N  RI +   +     +    +       KK        
Sbjct: 386 TILVSATIPVGIEHLANQLLHNFVRIAIGEKNLPCSNVRQIILWVEEPSKKKKLFEILND 445

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +    +    +      +  G    ++H    Q  R  IL    +   +++
Sbjct: 446 KKLFKPPVLVFVDCKLGADLLSDAVHKITGLQCTSMHSEKSQVERTAILQGLLQEKYEVI 505

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +  RGLD+ +V  V NFD+P+  + Y+H++GR GR G  G A T +     K    
Sbjct: 506 VSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRAGRLGHSGTAITFINNNSKKLFWD 565

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           + K ++     L   L  LN P        H+  R+  
Sbjct: 566 VVKRVKPTGTILPPQL--LNSP------YLHDQKRREQ 595


>gi|331657397|ref|ZP_08358359.1| ATP-independent RNA helicase DbpA [Escherichia coli TA206]
 gi|331055645|gb|EGI27654.1| ATP-independent RNA helicase DbpA [Escherichia coli TA206]
          Length = 457

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 131/383 (34%), Positives = 208/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  T +Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTSVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +  + T  L + G  PF  Q   L+
Sbjct: 64  QIDVSLFQTQG---LVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+  ++C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W     +S   PLE
Sbjct: 357 SDMLQIKLNWQTPPANSSIVPLE 379


>gi|89902341|ref|YP_524812.1| ATP-dependent RNA helicase DbpA [Rhodoferax ferrireducens T118]
 gi|89347078|gb|ABD71281.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
          Length = 473

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 138/422 (32%), Positives = 215/422 (50%), Gaps = 17/422 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L L+P  +  +   GY++ TPIQ  ++P  L   D+   A+TG+GKTA+F L +L  
Sbjct: 20  FESLALNPATLANLQQLGYLEMTPIQAASLPAALAGKDLIAQAETGSGKTAAFALALLER 79

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L     R    + L+L PTRELA QV     +  +  +    + +  G+    Q   LE+
Sbjct: 80  L---NPRRFAVQALVLCPTRELADQVTIEIRRLARATDNIKVVTLCGGVALRGQRASLEQ 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR++DH  R  L +  +  LV+DEADRMLDMGF   +  +    P  RQTL
Sbjct: 137 GAHIVVGTPGRVMDHLAREYLNLEALNTLVLDEADRMLDMGFFDDMATVAKQCPKERQTL 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + ++K+++ F++ P R       +  +T        Y            LL +
Sbjct: 197 LFSATYPEGIEKLAQQFMREPLR----VQVAAQQTESLIEQRFYEVTRANRFEAVALLLN 252

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FCN K+   +L   L+ QGFS  A++G ++QR R ++L+ F   +  ++VA
Sbjct: 253 HFRPISTLAFCNTKQQCKDLVTYLQAQGFSALALYGELEQRERDQVLAQFSNRSASVLVA 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A+RGLDI  +  V N D+    E ++HRIGRTGRAG  G A +L +  ++  +  IE
Sbjct: 313 TDVASRGLDITQLEAVINVDITPDPEVHVHRIGRTGRAGESGLALSLASMNEMGSVGKIE 372

Query: 362 KLIEK-----KVDWLNGDLSS-LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           +  ++     K+D L       L PP+  + I      RK    P    G       YS 
Sbjct: 373 QYQKRESVWHKLDELKPTGQGPLLPPMVTLQIL---GGRKEKIRPGDVLGALTADAGYSR 429

Query: 416 QK 417
           ++
Sbjct: 430 EQ 431


>gi|308162488|gb|EFO64878.1| ATP-dependent RNA helicase p54, putative [Giardia lamblia P15]
          Length = 430

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 99/391 (25%), Positives = 171/391 (43%), Gaps = 7/391 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL  +++  +   G+ + TP+Q   IP +L + DV   A+ GTGKT SF++P+L +
Sbjct: 23  FSSLGLKQELLMGLTQEGFQQLTPVQELAIPHILAKKDVVARAKNGTGKTGSFLIPILQM 82

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +   +  ++    L         A+VA    K   +    +   IGG+      ++    
Sbjct: 83  VNPAKDHIQALVLLHTRELAMQTAKVAKTLSKNMPDVTGRIMCAIGGVSIAEDRERAREK 142

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V++ TPGR+    +   L   +  I+V+DEAD +L   FI  I+N  +     ++  L
Sbjct: 143 PLVVLATPGRLQQLIDEEILNFRDCSIVVLDEADMLLSQNFIRSIENCLAACSSRKRQTL 202

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           F +       K   +              S        +V    +   K  LL  L++  
Sbjct: 203 FFSATFSNSLKEFCDKHLKDPEYVNAMQDSLLLRGVTQYVCMLKEDRYKLKLLSLLMKHL 262

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  +   + ++         ++        H  +    R +I  NF  G  +L++A+
Sbjct: 263 KINQCIVFVNSVQRCEALYRSICDEFRVPCLYTHSRMSPEERSRIYDNFIHGQARLLIAT 322

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  V NFD P  A+ Y+HRIGR+GR G  G A T+VA + + +    I+
Sbjct: 323 ELFTRGIDIRMVNVVVNFDTPLSADAYLHRIGRSGRYGHLGIAITMVAGDSEKRRFLTID 382

Query: 362 KLIEKK----VDWLNGDLSSLNPPLEKIDIA 388
             I+ +    +  L  D S +  PL+  D +
Sbjct: 383 SYIQGQANSMIHILPKDPSEI--PLDLYDAS 411


>gi|260948446|ref|XP_002618520.1| eukaryotic initiation factor 4A [Clavispora lusitaniae ATCC 42720]
 gi|238848392|gb|EEQ37856.1| eukaryotic initiation factor 4A [Clavispora lusitaniae ATCC 42720]
          Length = 396

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 133/377 (35%), Positives = 200/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L P++V  +   GY  P+ IQ + I  + +  DV   AQ+GTGKTA+F +  L 
Sbjct: 23  SFDDLNLKPEIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQ 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++      +    LIL PTRELA Q+ +     G   N+TV   IGG       +    
Sbjct: 83  NIDVNEKATQ---ALILAPTRELALQIQNVISHIGLYLNVTVHASIGGTSMSDDIEAFRS 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D   R     + +++ ++DEAD ML  GF   I NI  L+P T Q +
Sbjct: 140 GVQIVVGTPGRVSDMIERRYFKTHKVKMFILDEADEMLSSGFKEQIYNIFKLLPETTQVV 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+ NP RI V     T E I+  ++    +  K   L       
Sbjct: 200 LLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQYYINVEEEEYKFDCLCDL--YD 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN +  V NL   L+   F+V AIH ++ Q  R  I++ F+ G+ +++++
Sbjct: 258 SISVTQAVIFCNTRSKVENLMAKLKANNFTVSAIHADLPQAERDTIMNEFRSGSSRILIS 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V K D+  +  IE
Sbjct: 318 TDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTKLDVGMMREIE 377

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    ++D +  D+ +L
Sbjct: 378 KFYSTQIDEMPADIGAL 394


>gi|146417127|ref|XP_001484533.1| hypothetical protein PGUG_03914 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 705

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 141/473 (29%), Positives = 235/473 (49%), Gaps = 32/473 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L LS  ++  V + GY  P+ IQ  +IP+ +   D+   A TG+GKTA++++P++ 
Sbjct: 199 SFQALQLSRPLLKGVGNLGYTVPSAIQAASIPIAMMGKDIVAGAVTGSGKTAAYLIPIIE 258

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            L    A V   R ++L PTRELA QV D  +K G+   NL   L +GG+    Q ++L+
Sbjct: 259 RLIYKPAAVSATRVIVLTPTRELAIQVCDVGKKLGQFVANLNFGLAVGGLNLRQQEQQLK 318

Query: 121 RGADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFI-PYIQNITSLVPFTR 178
              D+++ TPGR++DH        + N+E+LV+DEADRML+ GF     + +  +    R
Sbjct: 319 SRPDIVVATPGRLIDHIRNSPSFSIENLEVLVMDEADRMLEEGFQVELTEILELIPKHKR 378

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET--IEHCFVATYAQYSKKCALLQ 236
           QT+LFSATM  ++Q + +  L  P RI VN P   A     E   +              
Sbjct: 379 QTMLFSATMNTKIQDLIQLSLDKPVRIMVNPPKQAASKLVQEFVRIRKREHLKPALLYHL 438

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L         ++F ++K+    L   L   G  V  +HG++ Q  R++ + +F+   +
Sbjct: 439 LRLVDPQQQNRIVVFVSRKEMAHRLRIVLGLLGMKVLELHGSLTQEQRLQSVKDFRSLAV 498

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDI 354
            +++ +DLAARGLDIP +  V NFD+P   E Y+HR+GRT RAGR G++ T V  + +D 
Sbjct: 499 PVLICTDLAARGLDIPKIEIVINFDMPKTHEIYLHRVGRTARAGREGRSITFVGESNQDR 558

Query: 355 KHIDAIEKLIE--------------KKVDWLNGDLSS----LNPPLEKIDIAQH------ 390
             +    K +E              KKV+ LN  + S    ++  LE+  +A+       
Sbjct: 559 SIVKDAIKSLEEQKNGKAVSRTVDWKKVEELNSIVESKKDTIDEVLEEEKLAKEILQAEM 618

Query: 391 NHARKNNPIPQKSTGFDRRKKN-YSSQKSHIPLKESEKISKLQQDIQENDADS 442
              + +N +  +     R K+  + S++     + +  +  L +  ++ ++  
Sbjct: 619 QLEKASNIMKHEKEIHSRPKRTWFQSEQEKKQAQRTPVMQLLTKHGKKVNSKK 671


>gi|76798781|ref|ZP_00780996.1| ATP-dependent RNA helicase [Streptococcus agalactiae 18RS21]
 gi|76585865|gb|EAO62408.1| ATP-dependent RNA helicase [Streptococcus agalactiae 18RS21]
          Length = 359

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 115/364 (31%), Positives = 174/364 (47%), Gaps = 9/364 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D    P +  A+ +  +V PT +Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDFNFKPYIQRALDELKFVDPTDVQAKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNK 117
             L++    V++    I  P+REL  Q+    ++  ++    + ++             K
Sbjct: 61  EKLDESSDDVQVV---ITAPSRELGTQIYQATKQIAEHSEQEIRVVNYVGGTDKLRQIEK 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++     V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LKVSQPHIVIGTPGRIYDLVKSGDLAIHKAHTFVVDEADMTLDMGFLDTVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEKIKTATVIADTI---DNWLLSTKGRDKNAQIL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L         +IF N K+    L   L   G  V  IHG I  R R +I++  K    +
Sbjct: 235 ELSKLMQPYLAMIFVNTKERADELHSYLSSNGLKVAKIHGGIAPRERKRIMNQVKNLEFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDI 354

Query: 358 DAIE 361
             +E
Sbjct: 355 RELE 358


>gi|67524949|ref|XP_660536.1| hypothetical protein AN2932.2 [Aspergillus nidulans FGSC A4]
 gi|74657405|sp|Q5B948|IF4A_EMENI RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|40744327|gb|EAA63503.1| hypothetical protein AN2932.2 [Aspergillus nidulans FGSC A4]
          Length = 421

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P+++  V   G+ +P+ IQ + I  +++ +DV   AQ+GTGKTA+F +  L 
Sbjct: 49  SFDSMELKPELLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATFSISALQ 108

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     V+  + LI+ PTRELA Q+       G   N+     IGG         L  
Sbjct: 109 KLDPN---VKACQALIVAPTRELAQQIQKVVIAIGDFMNIQCHACIGGTAVRDDMNALRE 165

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGRI D   R  L  + +++ ++DEAD ML  GF   I +I  L+P + Q +
Sbjct: 166 GPQIVVGTPGRIHDMIQRRVLKTDQMKMFILDEADEMLSRGFTEQIYDIFQLLPQSTQVV 225

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 226 LLSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 283

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A
Sbjct: 284 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIA 343

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 344 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 403

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 404 QFYSTQIEEMPMNVADL 420


>gi|317140737|ref|XP_001818384.2| ATP-dependent RNA helicase eIF4A [Aspergillus oryzae RIB40]
          Length = 397

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 208/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P+++  V   G+ +P+ IQ + I  +++  DV   AQ+GTGKTA+F +  L 
Sbjct: 25  SFDAMELKPELLRGVYAYGFERPSAIQQRAIKPIIKGSDVIAQAQSGTGKTATFSISALQ 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     V+  + LIL PTRELA Q+       G   N+T    IGG       K L  
Sbjct: 85  KLDPN---VKGCQALILAPTRELAQQIQKVVVAIGDFMNITCHACIGGTAVREDMKALGE 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G +V++ TPGR+ D   R  L  ++++  ++DEAD ML  GF   I +I  L+P + Q +
Sbjct: 142 GPEVVVGTPGRVHDMIQRRVLKTDHLKQFILDEADEMLSRGFTEQIYDIFQLLPQSTQVV 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 202 LLSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A
Sbjct: 260 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIA 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 320 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 379

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 380 QFYSTQIEEMPMNVADL 396


>gi|302414618|ref|XP_003005141.1| ATP-dependent RNA helicase eIF4A [Verticillium albo-atrum VaMs.102]
 gi|261356210|gb|EEY18638.1| ATP-dependent RNA helicase eIF4A [Verticillium albo-atrum VaMs.102]
          Length = 397

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 132/377 (35%), Positives = 210/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L  +++  V   G+ +P+ IQ + I  V++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 25  SFDDMELKSELLRGVYAYGFERPSAIQARAIMPVVKGNDVIAQAQSGTGKTATFSISVLQ 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+  + LIL PTRELA Q+       G   N+     IGG       K L+ 
Sbjct: 85  KIDPA---VKQCQALILAPTRELAQQIQKVVIAIGDFMNIECHACIGGTSVRDDMKALQD 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I  L+P + Q +
Sbjct: 142 GPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVV 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 202 LLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A
Sbjct: 260 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIA 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  ED++ +  IE
Sbjct: 320 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTAEDVRMMREIE 379

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 380 QFYSTQIEEMPMNVADL 396


>gi|238881563|gb|EEQ45201.1| hypothetical protein CAWG_03515 [Candida albicans WO-1]
          Length = 765

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 118/455 (25%), Positives = 212/455 (46%), Gaps = 25/455 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F+DL ++   +  + +A +V  T IQ KTIP+ L+  D+ G A+TG+GKT +F++P + 
Sbjct: 49  QFSDLPITENTLKGLKEATFVSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPVIE 108

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +++            LI+ PTRELA Q+ +   K GK    +  L+ GG   + + +++ 
Sbjct: 109 SLIRNKITEYDGLAALIVSPTRELAVQIFEVLTKIGKYNTFSAGLVTGGKDVQFEKERVS 168

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++               +  +N+++LV+DEADR LDMGF   I NI   +P TRQT
Sbjct: 169 RMNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPTTRQT 228

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT ++ +  ++   L NP +I V++    + T E            +   +     
Sbjct: 229 LLFSATQSESVNDLARLSLTNPNKIGVSSDQEVSATPESLEQYYVKVPLDEKLDVLWSFI 288

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI--HGNIDQRSRMKILSNFKEGTIQL 298
                   ++F +  K V     +       +  +  +G   Q SR++    F +     
Sbjct: 289 KSHLKSKILVFFSSSKQVQYTYETFRTLQPGISLMKLYGRHKQTSRLETTMKFSQAQHAC 348

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+ ARGLD P +  V   D P  A  Y+HR+GR+ R GR GK+  ++   + + + 
Sbjct: 349 LFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGRSARFGRKGKSLLMLLPSEEEGM- 407

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +++L   K+  +   L ++              ++K+     +S  F         Q++
Sbjct: 408 -LKRL---KIHKIEPKLMNI-----------KQKSKKSIRPQLQSLCFKDPVMKNLGQRA 452

Query: 419 HIP------LKESEKISKLQQDIQENDADSLGFRG 447
            I       +++ + + K+++   E+ A SLG  G
Sbjct: 453 FIAYFKSVHIQKDKDVFKVEELPAESYAASLGLPG 487


>gi|152976718|ref|YP_001376235.1| DEAD/DEAH box helicase domain-containing protein [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152025470|gb|ABS23240.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 436

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 117/381 (30%), Positives = 204/381 (53%), Gaps = 7/381 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ AV +  + +PT IQ K  P+V +   + G +QTG+GKT +++LP + 
Sbjct: 5   TFTQYNFQPFLIDAVRELRFTEPTEIQKKIFPVVKKGVSIIGQSQTGSGKTHAYLLPTIN 64

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ++  R  V+ +      E  +++  ++    +   +   +T   LIGG   +   +KL+
Sbjct: 65  QIDPKREEVQLVITAPTRELAQQIYQEIIKLTKFCTEEQMITARCLIGGTDKQRSIEKLK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++  E +++DEAD MLDMGFI  +  + + +P   Q 
Sbjct: 125 KQPHIVVGTPGRIKDLIEEQALFVHTAETIIVDEADLMLDMGFIQDVDKVAARMPKNLQM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +     +    + + + 
Sbjct: 185 LVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSRH---RNKIEIVKNML 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      I+F N KK    + + L ++G  V  IHG++  R R K++   ++   Q +V
Sbjct: 242 LQFQPYLAIVFTNTKKMAEEVANGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    D + ID++
Sbjct: 302 ATDLAARGIDIEGISHVINYEIPSDLDFFVHRVGRTARAGYSGIAVTIYDARDEEAIDSL 361

Query: 361 EK---LIEKKVDWLNGDLSSL 378
           EK   +  K V+  NG+   L
Sbjct: 362 EKQRNITFKHVELRNGEWIDL 382


>gi|121604377|ref|YP_981706.1| DEAD/DEAH box helicase domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120593346|gb|ABM36785.1| DEAD/DEAH box helicase domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 649

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 134/462 (29%), Positives = 220/462 (47%), Gaps = 62/462 (13%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR----------HDVCGIAQTGTGKT 52
           F  LGL+ +++ AV D G+ +PT +Q+ TIP  +Q            D+   +QTG+GKT
Sbjct: 52  FVKLGLAKELLQAVADMGFTQPTSVQMATIPKAMQALDADPKAPKFTDLLVSSQTGSGKT 111

Query: 53  ASFVLPMLT---------------------------------------ILEKGRARVRMP 73
           A+F+LP+L                                               +   P
Sbjct: 112 AAFLLPVLHTLLKQQEEAERNERAEFERLSAEAVARGEAPLKKPKRKDPTNMRNFKAATP 171

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
             LIL PTRELA QV  +     ++        + G           + AD+++ TPGR+
Sbjct: 172 GALILCPTRELAQQVCADAIDLVRHCRGLRVANVVGGIPYQLQIAKLQNADLVVATPGRL 231

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193
           LD     ++ ++ ++ LV+DEADRMLD+GF   +  +  L    +QT++FSAT    + +
Sbjct: 232 LDLQRSMQIKLDQVQFLVVDEADRMLDLGFADDLTEVNQLTIERKQTMMFSATFAPRIMQ 291

Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
           ++   ++ P+R+E+++P     +I    +       K+            T+   I+F  
Sbjct: 292 LATRVMRQPQRVEIDSPHEKHASITQSLLWADNMTHKRKL--LDHWLRDTTINQAIVFAC 349

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            +     L + L ++GFS  A+HG + Q  R + L  F++G +Q++VA+D+AARGLD+P 
Sbjct: 350 TQVECDGLANDLVQEGFSAVALHGALGQGLRNRRLMAFRDGRVQILVATDVAARGLDVPT 409

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373
           + HV N+ +P +AE+Y+HRIGRTGRAGR G+A T+    D + I  IE   ++ +     
Sbjct: 410 ITHVINYGLPMKAEDYVHRIGRTGRAGREGQAITIAEFRDRRKIQDIEHYTQQNLK---- 465

Query: 374 DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
             +S+   LE          R     P+ + G DR  +   S
Sbjct: 466 --ASVIAGLEPQQRFAPTSER-----PRGNFGGDRNDRGPRS 500


>gi|68470912|ref|XP_720463.1| hypothetical protein CaO19.2712 [Candida albicans SC5314]
 gi|68471370|ref|XP_720233.1| hypothetical protein CaO19.10227 [Candida albicans SC5314]
 gi|74627403|sp|Q5AF95|DBP4_CANAL RecName: Full=ATP-dependent RNA helicase DBP4
 gi|46442091|gb|EAL01383.1| hypothetical protein CaO19.10227 [Candida albicans SC5314]
 gi|46442332|gb|EAL01622.1| hypothetical protein CaO19.2712 [Candida albicans SC5314]
          Length = 765

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 118/455 (25%), Positives = 212/455 (46%), Gaps = 25/455 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F+DL ++   +  + +A +V  T IQ KTIP+ L+  D+ G A+TG+GKT +F++P + 
Sbjct: 49  QFSDLPITENTLKGLKEATFVSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPVIE 108

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +++            LI+ PTRELA Q+ +   K GK    +  L+ GG   + + +++ 
Sbjct: 109 SLIRNKITEYDGLAALIVSPTRELAVQIFEVLTKIGKYNTFSAGLVTGGKDVQFEKERVS 168

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++               +  +N+++LV+DEADR LDMGF   I NI   +P TRQT
Sbjct: 169 RMNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPTTRQT 228

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT ++ +  ++   L NP +I V++    + T E            +   +     
Sbjct: 229 LLFSATQSESVNDLARLSLTNPNKIGVSSDQEVSATPESLEQYYVKVPLDEKLDVLWSFI 288

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI--HGNIDQRSRMKILSNFKEGTIQL 298
                   ++F +  K V     +       +  +  +G   Q SR++    F +     
Sbjct: 289 KSHLKSKILVFFSSSKQVQYTYETFRTLQPGISLMKLYGRHKQTSRLETTMKFSQAQHAC 348

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+ ARGLD P +  V   D P  A  Y+HR+GR+ R GR GK+  ++   + + + 
Sbjct: 349 LFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGRSARFGRKGKSLLMLLPSEEEGM- 407

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +++L   K+  +   L ++              ++K+     +S  F         Q++
Sbjct: 408 -LKRL---KIHKIEPKLMNI-----------KQKSKKSIRPQLQSLCFKDPVMKNLGQRA 452

Query: 419 HIP------LKESEKISKLQQDIQENDADSLGFRG 447
            I       +++ + + K+++   E+ A SLG  G
Sbjct: 453 FIAYFKSVHIQKDKDVFKVEELPAESYAASLGLPG 487


>gi|74025742|ref|XP_829437.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70834823|gb|EAN80325.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
          Length = 556

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 90/435 (20%), Positives = 170/435 (39%), Gaps = 24/435 (5%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           L L   ++  + +  +  PTPIQ++TIP ++Q  DV   A TG+GKT +F++PM   L K
Sbjct: 136 LSLDECLISNLFERNHRIPTPIQMQTIPCLVQGRDVLACAPTGSGKTVAFLIPMFARLGK 195

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
              R    R LI+ PT ELA Q+        K     +         +       +   +
Sbjct: 196 PD-RDAGVRALIITPTMELAEQIEREAFFLLKGKRWKL--------VQHGQTTRNKDIFI 246

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
                   L       L      +    +         +  +  + +   +  + +    
Sbjct: 247 TTPGRVSTLLERKLVDLSNIQYLVFDEGDRLWDSSTDNLRVMDIVLTACTYKEKVVALFT 306

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
               E  + +   +  P  + +                 +        +  + +  +   
Sbjct: 307 ATLSEKIEAAARSVMGPDPVRIIVSGRAKANKNVKQELVFCGNELGKVVAIRNIVREGVT 366

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              +IF    +    L   ++ QG  +  ++  +    R + + NF+ G I ++V ++L 
Sbjct: 367 PPVLIFVQSIERTKELHEEIQCQGLRIAIMNAKMTHEERDETMMNFRLGKIWVLVTTELL 426

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RG+D  +VG V NFD+P   E+YIHR+GR GRAG+ GKA T   ++D   I  I ++++
Sbjct: 427 SRGIDFKNVGTVINFDIPTTVESYIHRVGRCGRAGKTGKAITFFTEDDKHRIPPIARVMK 486

Query: 366 KKVDWLNGDLSSLNPPLEK--IDIAQHNHARKN--NPIPQKSTGFDRRKKNYSSQKSHIP 421
           +              P+E   ++I  H   R+      P +     R++   + Q+    
Sbjct: 487 ES-----------GSPIEDWMLEIKTHRSVRRRLQRTTPHRMIVSTRKRMLVADQRMKRQ 535

Query: 422 LKESEKISKLQQDIQ 436
           L+  E  +  + + Q
Sbjct: 536 LRRLEYENAQKAEGQ 550


>gi|321476790|gb|EFX87750.1| hypothetical protein DAPPUDRAFT_306525 [Daphnia pulex]
          Length = 494

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 98/394 (24%), Positives = 181/394 (45%), Gaps = 14/394 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  L L P+++  V   G+  P+ IQ   +P +L     ++   +Q+GTGKTA+FVL M
Sbjct: 106 TFEALNLRPELLKGVHAMGFDAPSKIQETALPTLLVDPPQNMIAQSQSGTGKTAAFVLAM 165

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+  +        P  + L PT ELA Q  +  +K  K                 +  +L
Sbjct: 166 LSRTDVT---KNYPHVVCLSPTFELAIQTGEVAKKMAKFCPHIRIRYAVRGEEIPRGSQL 222

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +             R   L      ++ +    +   G       I  L+P + Q
Sbjct: 223 DDHILIGTPGKLLDWGTKLRCFDLTKVEVFVLDEADVMIATQGHQDQSIRIHKLLPKSCQ 282

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT  +++ K +E  ++NP  ++++    + + I+  +V   ++  K  ++    +
Sbjct: 283 MMLFSATYDEDVMKFAEMIIRNPVVLKLHREQQSLDNIKQHYVVCKSKEDKYRSIS--NI 340

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC+ +K    L  ++ ++G +V  + G ++   R+ I++ F+EG  +++
Sbjct: 341 YGVLTIGQAMIFCHTRKTASWLAETMSREGHAVALLSGELEIDQRINIINRFREGKEKVL 400

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           + +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  LV    
Sbjct: 401 ITTNVMARGIDVEQVTMVVNFDLPVDQNGRADCETYLHRIGRTGRFGKSGVAINLVDGPR 460

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
            ++ +  IE   ++ +  L+ +       L K D
Sbjct: 461 SMQVLQFIEAHFKRPILRLDAEDVDEIEKLNKDD 494


>gi|320168710|gb|EFW45609.1| myc-regulated DEAD box protein [Capsaspora owczarzaki ATCC 30864]
          Length = 707

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 114/451 (25%), Positives = 200/451 (44%), Gaps = 20/451 (4%)

Query: 3   FADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           F+ L   +S K + A+ D  +   T IQ + IP ++   D+   A+TG+GKT +F++P +
Sbjct: 211 FSSLAGTVSDKTLQAIADMKFTHMTEIQRRCIPPLVAGKDLLAAAKTGSGKTLAFLIPAI 270

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +           +I+ PTREL+ Q         +++N T  L++GG   + + +KL
Sbjct: 271 ELMSQLNFMPRNGTGVIIISPTRELSLQTYGVCRDLLRHHNHTFGLVMGGANRKQEAEKL 330

Query: 120 ERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS--LVPF 176
            +G ++LI TPGR +    N       ++E+L+IDEADR+L++GF   ++ I        
Sbjct: 331 CKGINILIATPGRLLDHLQNTKGFNFKHLEMLIIDEADRILEIGFEEEMKQIIRLLPKDS 390

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            R+T+LFSAT T  ++ ++   L+               T E          + +  LL 
Sbjct: 391 QRRTVLFSATQTRNVEDLARISLKKEPLYIGVDDEKIVATAEGLEQGYVVCKAGQRFLLL 450

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                ++  K  ++F +   +V      L      V  IHG   Q+ R      F     
Sbjct: 451 FTFLKKNQNKKVMVFFSSCNSVKFHSELLNYIDLPVLEIHGRQKQQKRTNTFFEFCNAKT 510

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIK 355
            +++ +D+AARGLDIP V  +  +D P+  + YIHR+GRT R     G A   +  E++ 
Sbjct: 511 GILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGVNGSGHALLFLLPEELA 570

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YS 414
            +  +++            L+    P+ KI    HN   +   + +K+    R  ++ Y 
Sbjct: 571 FLRYLKQA--------KVPLNEYEFPVSKI----HNVQSQLEKLIEKNYYLHRSARDGYR 618

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGF 445
           S            I  + +   +    + GF
Sbjct: 619 SYLQAYASHAHRSIFDVTKLDLQQVGQAFGF 649


>gi|300121126|emb|CBK21507.2| unnamed protein product [Blastocystis hominis]
          Length = 518

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 185/377 (49%), Gaps = 15/377 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F++  +   ++  ++   Y +PTP+Q   + +     D+   AQTG+GKTA F+ P++ 
Sbjct: 137 EFSEEYIPKSLLDNIIRCDYRRPTPVQKYGLAIGCIGRDLMACAQTGSGKTAGFLFPIII 196

Query: 62  IL----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
            +                   P  LIL PTRELA Q+    +++     +  A++ GG P
Sbjct: 197 SMLRNGPSKAPLPDDYGDRYFPTCLILSPTRELALQIYQESQRFCYCTGIASAVVYGGTP 256

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
                  L  G D+L+ TPGR+ D   RG L +  I  LV+DEADRMLDMGF P I++I 
Sbjct: 257 MREVLDSLRSGCDILVGTPGRVKDMIQRGILGLEGITHLVLDEADRMLDMGFEPQIRDIV 316

Query: 172 SLVPFTRQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                 R     +FSAT  DE+Q+++ +FL +   + V      A+ IE           
Sbjct: 317 EQSGMPRNRQTLMFSATFPDEIQRLAGDFLIDYVFLAVGRVGGAAQDIEQ---RVIYVED 373

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
                              +IF   K+    L   L  Q F   +IHG+  Q  R   LS
Sbjct: 374 ADKDSYLLHELENWGNGRILIFVETKRKADILQRYLTTQHFQAASIHGDRSQADREDALS 433

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK   +Q++VA+D+AARGLDIPDV  V N+D P   E+Y+HRIGRTGRAG  G A + +
Sbjct: 434 AFKLNRVQILVATDVAARGLDIPDVSLVINYDTPQNIEDYVHRIGRTGRAGNTGVAISFI 493

Query: 350 AKEDIKHIDAIEKLIEK 366
            + +      +  L+++
Sbjct: 494 NENNRPIARDLYDLLDE 510


>gi|113969711|ref|YP_733504.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113884395|gb|ABI38447.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 427

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 146/417 (35%), Positives = 218/417 (52%), Gaps = 19/417 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+   +   + +  Y  PTPIQ  TIP VL   DV   A TG+GKTA+F +P+L 
Sbjct: 10  SFAELGIIAPLCNRLTELTYAAPTPIQAATIPAVLSGRDVLAGANTGSGKTAAFAVPLLQ 69

Query: 62  ILEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQN 116
            L + +         R L+L PTRELA QVAD+F  Y  ++N    +    GG+    Q 
Sbjct: 70  RLFEAKTAEKSAGQVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQM 129

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  GADVL+ TPGR+LD      L +N +  LV+DEADRML +GF   +  +   +P 
Sbjct: 130 QSLRAGADVLVATPGRLLDLLASNALKLNRVLALVLDEADRMLSLGFTDELNQVLEALPA 189

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +QTLL+SAT  +E++ ++   L  P    + +     E              ++   L 
Sbjct: 190 KKQTLLYSATFPEEVRALTAKLLHQPLEYHLQS-----EQESTIEQRVITVNREQKTALL 244

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L  Q      +IF + K    +L   L K+G S    HG+  Q +R ++L  FK G I
Sbjct: 245 AHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKSGDI 304

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARG+DI  +  V NFD+P    +Y+HRIGR+GRAG  G A TL++ E+  H
Sbjct: 305 SVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHH 364

Query: 357 IDAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
              IEK  + K++   + G  ++   PLE +       A++      + TG  +RK+
Sbjct: 365 FGVIEKKNKIKLEREQVPGFEANAEMPLEVL-------AQEKPQAKPEGTGKKKRKQ 414


>gi|324991997|gb|EGC23919.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK405]
          Length = 447

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 124/407 (30%), Positives = 189/407 (46%), Gaps = 20/407 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +++ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALKDLNFLEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-- 118
            +L++    V+     I  P+RELAAQ+     +        + +       +   +   
Sbjct: 61  QMLDEEADSVQAV---ITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQIGK 117

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTI---ENWLLSTKGRDKNAQIY 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
             +EK +  K            P + K D  Q  + R      +KS 
Sbjct: 355 RELEK-MGIK----------FTPKMIKDDEFQDTYDRDRRANREKSR 390


>gi|318081433|ref|ZP_07988765.1| ATP-dependent RNA helicase [Streptomyces sp. SA3_actF]
          Length = 488

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 133/433 (30%), Positives = 211/433 (48%), Gaps = 5/433 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+LGL   +V  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP+L  
Sbjct: 53  FAELGLPENIVRKLTQNGVTSPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLAS 112

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G    + PR +IL PTRELA QVAD  + YG   +L + ++ GG     Q   LERG
Sbjct: 113 LAGGFTDKKKPRGIILTPTRELAMQVADALQPYGDVLDLRMKVVCGGTSMSNQIYALERG 172

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+L+ TPGR+ D  NRG   +  + I ++DEAD+M D+GF+P +  +   VP   Q +L
Sbjct: 173 VDILVATPGRLRDLINRGACSLEKVRIAILDEADQMADLGFMPEVTELLDQVPAGGQRML 232

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ +E+  + + +L +P   EV+       T+ H  +       K            
Sbjct: 233 FSATLENEIDALVKRYLVDPIAHEVDAAQGAVTTMSHHILIV-----KPRDKAPVTAAIA 287

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   +     +   L   G    A+HG + Q +R ++L++FK+G + ++VA+
Sbjct: 288 SRKGRTIIFVRTQLGADRVAEQLRDAGVKADALHGGMTQGARTRVLADFKDGYVNVLVAT 347

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L      + I  + +
Sbjct: 348 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSLSLPHQRRQIFRLME 407

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPL 422
                        +  +  L +I  A+     +     Q +   +R  ++ + +      
Sbjct: 408 DAGVDAARHQIGSAVFDAELAEITGARSMTEVQAESAGQSAKQAEREVEDLTRELERAKR 467

Query: 423 KESEKISKLQQDI 435
           + SE  ++  + +
Sbjct: 468 RASEYRAEADRLV 480


>gi|229155721|ref|ZP_04283827.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus ATCC
           4342]
 gi|228627707|gb|EEK84428.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus ATCC
           4342]
          Length = 389

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 99/348 (28%), Positives = 179/348 (51%), Gaps = 8/348 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P +  A   AG+ + T IQ + IP +L+  DV   + TGTGKT +++LP+L  +      
Sbjct: 7   PFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI---NPE 63

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           V+ P+ ++L PTREL  Q+ +  +K+     ++ A LIGG   + Q +KL++   V++ +
Sbjct: 64  VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLKKHPRVIVGS 123

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGRIL+     KL M+ ++ +V DE D+++    +  +Q++       RQ + FSATMT 
Sbjct: 124 PGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQLVFFSATMTK 183

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
             +  + +    P+ + V    S +         TY    ++                 +
Sbjct: 184 AAEDAARDLAVEPQLVRVTRAESKSLVE-----HTYIICERREKNDYVRRIMHMGDVKAV 238

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
            F N    +  +   L+ +     A+H    ++ R   +  F+ G +++++A+D+AARG+
Sbjct: 239 AFLNDPFRLDEITEKLKFRKMKAAALHAETSKQEREATMRAFRGGKLEILLATDIAARGI 298

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           DI D+ HV + ++P+  + YIHR GRTGR G+ G   +LV  ++ + +
Sbjct: 299 DIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTPQEERKL 346


>gi|228920836|ref|ZP_04084175.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228838767|gb|EEM84069.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 389

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 99/348 (28%), Positives = 179/348 (51%), Gaps = 8/348 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P +  A   AG+ + T IQ + IP +L+  DV   + TGTGKT +++LP+L  +      
Sbjct: 7   PFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI---NPE 63

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           V+ P+ ++L PTREL  Q+ +  +K+     ++ A LIGG   + Q +KL++   V++ +
Sbjct: 64  VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLKKHPRVIVGS 123

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGRIL+     KL M+ ++ +V DE D+++    +  +Q++       RQ + FSATMT 
Sbjct: 124 PGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQLVFFSATMTK 183

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
             +  + +    P+ + V    S +         TY    ++                 +
Sbjct: 184 AAEDAARDLAVEPQLVRVTRAESKSLVE-----HTYIICERREKNDYVRRIMHMGDVKAV 238

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
            F N    +  +   L+ +     A+H    ++ R   +  F+ G +++++A+D+AARG+
Sbjct: 239 AFLNDPFRLDEITEKLKFRKMKAAALHAEASKQEREATMRAFRGGKVEILLATDIAARGI 298

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           DI D+ HV + ++P+  + YIHR GRTGR G+ G   +LV  ++ + +
Sbjct: 299 DIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTPQEERKL 346


>gi|295672568|ref|XP_002796830.1| ATP-dependent RNA helicase eIF4A [Paracoccidioides brasiliensis
           Pb01]
 gi|226282202|gb|EEH37768.1| ATP-dependent RNA helicase eIF4A [Paracoccidioides brasiliensis
           Pb01]
          Length = 398

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L  +++  V   G+ +P+ IQ + I  V++  DV   AQ+GTGKTA+F +  L 
Sbjct: 26  SFDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++  + LIL PTRELA Q+       G   ++     IGGI      K L+ 
Sbjct: 86  KVDTN---LKACQALILAPTRELAQQIQKVVVAIGDFMSIECHACIGGISVRDDMKALQE 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I   +P + Q +
Sbjct: 143 GPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSHGFTEQIYDIFQFLPQSTQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 203 LLSATMPQDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A
Sbjct: 261 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIA 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 321 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 381 QFYSTQIEEMPMNVADL 397


>gi|225710224|gb|ACO10958.1| Probable ATP-dependent RNA helicase DDX49 [Caligus rogercresseyi]
          Length = 454

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 137/412 (33%), Positives = 211/412 (51%), Gaps = 15/412 (3%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
             LGL P +       G   P+P+Q +T+P +L   +  GIA+TG+GKTA+F LP+L  L
Sbjct: 2   DSLGLKPWLSKQCEAIGLKSPSPVQRETVPKILDGQNGIGIAKTGSGKTAAFALPILDAL 61

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            +          L+L PTRELA Q+AD F+  GK  N+ V+++IGG     Q  +L    
Sbjct: 62  SE---DPYGIYALVLTPTRELAYQIADTFKILGKPLNVKVSIIIGGRDMVLQGSELASSP 118

Query: 124 DVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            ++I TPGR+ DH N          I+ LVIDEADR+L+ GF   I  I + +P +RQTL
Sbjct: 119 HIVIATPGRLADHLNTHSQSSPLKKIKFLVIDEADRLLEGGFDEAIGRIFASIPRSRQTL 178

Query: 182 LFSATMTD-----ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           LF+AT ++      +    +      +  +  +  +     +H  +            + 
Sbjct: 179 LFTATHSESLKELIVANSEKEHFYYREGEDDASGLTVNTLDQHYVLTPADFRDAYLIGVL 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             +Q +    + IIF    K    L  +L K GFS  A+H    QR R++ LS F+    
Sbjct: 239 MKIQKESPNASFIIFARTCKIAQILSLTLGKLGFSNVALHSMKPQRERLEALSRFRSHLA 298

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++A+D+A+RGLDIP V +V N ++P  A  Y+HR+GRT RAGR G A +L+   D+  
Sbjct: 299 KILIATDVASRGLDIPHVEYVINHNIPTEATEYVHRVGRTARAGRRGTAISLLTPHDVLL 358

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           +++IE+LI  K+   + D  ++        + Q N  R+   I      FD 
Sbjct: 359 LESIEELIGSKLSEYSVDTKNIFEI-----VVQVNVTRRETDIRLTEVDFDE 405


>gi|329905038|ref|ZP_08273973.1| ATP-dependent RNA helicase DbpA [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547774|gb|EGF32547.1| ATP-dependent RNA helicase DbpA [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 461

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 141/379 (37%), Positives = 206/379 (54%), Gaps = 10/379 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L LSP ++  +   GY + TPIQ K++P++L R D+   A+TG+GKTA+F + +L 
Sbjct: 7   SFSTLALSPSMLANLDSLGYHEMTPIQAKSLPVILDRRDLIAQAKTGSGKTAAFGIGILQ 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L      ++    L++ PTRELA QV++   +  +  + T  L +  G P   Q   LE
Sbjct: 67  RLNPTWFAIQ---ALVICPTRELADQVSNELRRLARFADNTKILTLCGGAPMRPQIASLE 123

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ DH  RG + ++ ++ LV+DEADRM+DMGF   I  I S  P  RQT
Sbjct: 124 HGAHIIVGTPGRLRDHIGRGSIDLSTVQTLVLDEADRMVDMGFYEEISGIVSACPTRRQT 183

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D+++K S  FL++P  I V          +  +   Y   +     L     
Sbjct: 184 LLFSATYPDDIRKSSAPFLRDPTEITVEAQHDDNRIEQRFYEVGYDDRNDAVGRLL---- 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +     + + FCN K +   L   L  QGFS  A++G ++QR R +IL  F  G+  ++V
Sbjct: 240 NNYKPASALAFCNTKIHCRELADELRAQGFSAMALYGELEQRERDEILVLFANGSCSVLV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N DV    E +IHR+GRTGR    G A +L A  + K +  I
Sbjct: 300 ATDVAARGLDIQSLEMVINVDVSKDTEVHIHRVGRTGRGAARGLALSLCAPNEKKWVKLI 359

Query: 361 EKLIEKKVDWLNGDLSSLN 379
           E      V W   DL+ L 
Sbjct: 360 EDYQHGPVSWF--DLADLE 376


>gi|281206327|gb|EFA80516.1| exocyst complex subunit 3 [Polysphondylium pallidum PN500]
          Length = 1349

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 125/395 (31%), Positives = 203/395 (51%), Gaps = 12/395 (3%)

Query: 3    FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
            F D+  +P +   +L   Y KPTPIQ    P+ L   D+ GI+QTG+GKT SF LP +  
Sbjct: 916  FEDMQFAPSI-TNILKVNYEKPTPIQSIGWPVALSGRDMIGISQTGSGKTISFFLPAIQH 974

Query: 63   LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +     +      P+ LI+ PTREL+ Q++   + Y K   L   ++ GG     Q + L
Sbjct: 975  ILSQPRQTGPYLGPQVLIIAPTRELSVQISHEAQPYLKAARLNSVVMFGGESKSHQIRDL 1034

Query: 120  ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +R   V+I TPGRI+D    G L +  +   V+DEADRML+MGF   I+ I   +   RQ
Sbjct: 1035 KRCPQVVIGTPGRIIDIMKEGYLNLKRVSFFVLDEADRMLEMGFEDQIRAIFENIRPDRQ 1094

Query: 180  TLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTAETIEHCFVATYAQYSKKCALL 235
             L ++AT   ++Q ++  F+ NP +++V     T +   +       +   + +     L
Sbjct: 1095 VLYWTATWPRKVQTLAHEFIVNPVKVQVGSTELTANPNIKQNFIVVDSEKDKVNALVDTL 1154

Query: 236  QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
            +++   +   K  I    +        H  +     + +IHG+  Q  R+ I++ FK   
Sbjct: 1155 EKIFNERPEAKVIIFTMTKGGADKLAEHIGQIGNARIESIHGDKQQSRRIAIINGFKNNF 1214

Query: 296  IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            I ++VA+D+A+RGLDI  +  V NF +P + E+Y+HRIGRT RAG  G++ T+++K  + 
Sbjct: 1215 IDILVATDVASRGLDIRTITDVINFSMPTQIESYVHRIGRTARAGATGESHTIISKSSLN 1274

Query: 356  HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
             I+ I  LIE     + G    + P +  +   +H
Sbjct: 1275 DINLIPDLIE----LMTGANQEVPPVISALAPKRH 1305


>gi|319411502|emb|CBQ73546.1| related to DRS1-RNA helicase of the DEAD box family [Sporisorium
           reilianum]
          Length = 932

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 156/515 (30%), Positives = 244/515 (47%), Gaps = 58/515 (11%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F    LS  V+ A+    + KPTPIQ +TIP+ L   D+   A TG+GKTA+F++P   
Sbjct: 334 SFGAFSLSRPVLRALSSLSFHKPTPIQSRTIPIALAGKDIVAGAVTGSGKTAAFMIPTLE 393

Query: 60  -LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            LT   KGRA+    R LIL PTRELA Q     +   K  ++   L +GG+  ++Q  +
Sbjct: 394 RLTWRAKGRAQEAKTRVLILAPTRELAIQCYSVGKSIAKFTDIRFCLCVGGLSVKSQEAE 453

Query: 119 LERGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPY-IQNITSLVPF 176
           L+   +V+I TPGR++DH         +++EILV+DEADRML+ GF     + + S    
Sbjct: 454 LKLRPEVVIATPGRLIDHVRNSASFTLDDVEILVMDEADRMLEDGFADELNEIVKSCPKG 513

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY----------- 225
            RQT+LFSATMTD+++++    L+ P R+ V+   +TA+ +   FV              
Sbjct: 514 ARQTMLFSATMTDDVEQLVRLSLKRPVRLFVDPKRTTAKKLIQEFVRVRGSGPGGVAGAD 573

Query: 226 ----------------AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269
                                +   L   L ++      IIF   KK    L       G
Sbjct: 574 GLAGVGDEPSTSTVGKRSEDAQRPALLLALCTRTFTSQVIIFVRSKKLAHQLKIVFGLLG 633

Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329
            S   +HG++ Q  R+  L++F++G +  ++A+DLA+RGLDI  V  V N+D+P + E Y
Sbjct: 634 LSAGELHGDLSQEQRIDALTDFRDGKVDFLLATDLASRGLDIKGVQTVINYDMPGQFEAY 693

Query: 330 IHRIGRTGRAGRHGKAFTLVAKEDIKHID-AIEKLIEKKV-----------------DWL 371
           +HR+GRT RAGR+G+A TLV + D + +  AI+K   +++                 + L
Sbjct: 694 LHRVGRTARAGRNGRAVTLVGEADRRMLKLAIKKSSAEQIKHRIIPAAVASKMLETLEQL 753

Query: 372 NGDLSSL---NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKI 428
             ++ ++       + + IA+    +  N        F R K+ +    +    K+   +
Sbjct: 754 KPEVDAVLREEKEEKALRIAEMELKKGENMAAHADEIFARPKRTWFQTGAD---KQQAAL 810

Query: 429 SKLQQDIQENDADSLGF--RGNMPAFMLPKNRGKL 461
               Q     DA   G   R         K R K+
Sbjct: 811 VSKAQYEASMDAAKKGKEGRDKYAGLSRKKRRSKM 845


>gi|261328460|emb|CBH11437.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 827

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 102/363 (28%), Positives = 173/363 (47%), Gaps = 6/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS +    +   GY   TPIQ   + L L  +DV G A+TG+GKT  F++P+L +
Sbjct: 64  FDQLPLSQRTQLGLERGGYKLLTPIQSDALHLALAGYDVLGAARTGSGKTLCFIVPLLEL 123

Query: 63  LEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   +    M     +L PTRELA Q+    +  G  + ++ ALL GG     + K++  
Sbjct: 124 LYVEQWEAEMGIGALVLSPTRELALQIFKVLQLVGYKHVMSAALLTGGRDVNEERKRVSA 183

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + ++      +    +   L+ +N+++LV+DEADR+LDMGF   +  I   +P  RQTL
Sbjct: 184 ISIIVGTPGRVLHHLEDDDSLVTDNLQMLVMDEADRLLDMGFREVLSGILKQLPTQRQTL 243

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT T ++Q + +  L+N + +  +   +       C      +  +K  +L   L+ 
Sbjct: 244 MFSATQTTDVQMLGQMSLRNQRYVSAHAECAAPTPSTLCQNFVVVELHRKLDVLLLFLKR 303

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSL----EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                  ++F +    V  +  +     +K       +   + Q  R ++   F      
Sbjct: 304 HPN-DKFVVFVSTCNQVRYMYLAFAKILKKMHLPCMCLTSKMKQFRREEVFLTFCRCKNA 362

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++  +D+AARGLD P +     FD P+ A+ YIHR GRT RAG  G +   +   ++  +
Sbjct: 363 VLFCTDVAARGLDFPLIHWSVQFDCPDSAQTYIHRAGRTARAGARGVSLLFLTPREVPML 422

Query: 358 DAI 360
             +
Sbjct: 423 SFL 425


>gi|72389604|ref|XP_845097.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|62360158|gb|AAX80577.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
 gi|70801631|gb|AAZ11538.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
          Length = 828

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 102/363 (28%), Positives = 173/363 (47%), Gaps = 6/363 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS +    +   GY   TPIQ   + L L  +DV G A+TG+GKT  F++P+L +
Sbjct: 64  FDQLPLSQRTQLGLERGGYKLLTPIQSDALHLALAGYDVLGAARTGSGKTLCFIVPLLEL 123

Query: 63  LEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   +    M     +L PTRELA Q+    +  G  + ++ ALL GG     + K++  
Sbjct: 124 LYVEQWEAEMGIGALVLSPTRELALQIFKVLQLVGYKHVMSAALLTGGRDVNEERKRVSA 183

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + ++      +    +   L+ +N+++LV+DEADR+LDMGF   +  I   +P  RQTL
Sbjct: 184 ISIIVGTPGRVLHHLEDDDSLVTDNLQMLVMDEADRLLDMGFREVLSGILKQLPTQRQTL 243

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT T ++Q + +  L+N + +  +   +       C      +  +K  +L   L+ 
Sbjct: 244 MFSATQTTDVQMLGQMSLRNQRYVSAHAECAAPTPSTLCQNFVVVELHRKLDVLLLFLKR 303

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSL----EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                  ++F +    V  +  +     +K       +   + Q  R ++   F      
Sbjct: 304 HPN-DKFVVFVSTCNQVRYMYLAFAKILKKMHLPCMCLTSKMKQFRREEVFLTFCRCKNA 362

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++  +D+AARGLD P +     FD P+ A+ YIHR GRT RAG  G +   +   ++  +
Sbjct: 363 VLFCTDVAARGLDFPLIHWSVQFDCPDSAQTYIHRAGRTARAGARGVSLLFLTPREVPML 422

Query: 358 DAI 360
             +
Sbjct: 423 SFL 425


>gi|74694962|sp|Q75C76|DBP4_ASHGO RecName: Full=ATP-dependent RNA helicase DBP4
          Length = 763

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 122/459 (26%), Positives = 207/459 (45%), Gaps = 28/459 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F DL +S   V  + +A Y+K T IQ   IP+ L+ HDV G A+TG+GKT +F++P +
Sbjct: 41  VTFQDLPISSGTVKGLKEAAYIKMTDIQRAAIPVALKGHDVLGAAKTGSGKTLAFLVPVL 100

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +  +    +     L++ PTRELA Q+ +   K GK  + +  L+IGG   + + +++
Sbjct: 101 EKLYHERWTELDGLGALVISPTRELAMQIYEVLVKIGKYMSFSAGLVIGGKDVKFEMERV 160

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   ++      +        L  +N++ILV+DEADR LDMGF   +  I S +P +RQ
Sbjct: 161 SKINILIGTPGRLLQHMDQSVGLNTSNLQILVLDEADRCLDMGFKKALDAIVSNLPPSRQ 220

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT +  L  ++   L + K +      S+                        +L
Sbjct: 221 TLLFSATQSQSLADLARLSLADYKTVGTMDGPSSKNKPATPENLEQFYIQVALPDKLDIL 280

Query: 240 QSQDTMK---NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL--SNFKEG 294
            S          I+F +  K V  +  +  K    +  +H +  Q+   +      F   
Sbjct: 281 FSFIKSHLKSKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQTARTETLDKFSRA 340

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
               + ++D+ ARG+D P V  V   D P   + YIHR GR+ R G+ GK+  ++  ++ 
Sbjct: 341 QHVCLFSTDVVARGIDFPSVDWVIQTDCPEDVDTYIHRAGRSARYGKTGKSLLMLTPQEK 400

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                + +L  K ++              K++I Q    RK+     +S  F   +  Y 
Sbjct: 401 YAF--LARLKGKLIEP------------SKLNIKQ--SKRKSIKPQLQSLLFKDPELKYL 444

Query: 415 SQKSHIP------LKESEKISKLQQDIQENDADSLGFRG 447
           +QK+ I       +++  ++ K  +   E  A SLG  G
Sbjct: 445 AQKAFISYVRSIYIQKDTEVFKFNELPLEEFAASLGLPG 483


>gi|117919870|ref|YP_869062.1| 4a-hydroxytetrahydrobiopterin dehydratase [Shewanella sp. ANA-3]
 gi|117612202|gb|ABK47656.1| 4a-hydroxytetrahydrobiopterin dehydratase [Shewanella sp. ANA-3]
          Length = 427

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 146/417 (35%), Positives = 218/417 (52%), Gaps = 19/417 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+   +   + +  Y  PTPIQ  TIP VL   DV   A TG+GKTA+F +P+L 
Sbjct: 10  SFAELGIIAPLCNRLSELTYAAPTPIQAATIPAVLSGRDVLAGANTGSGKTAAFAVPLLQ 69

Query: 62  ILEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQN 116
            L + +         R L+L PTRELA QVAD+F  Y  ++N    +    GG+    Q 
Sbjct: 70  RLFEAKTAEKSAGQVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQM 129

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  GADVL+ TPGR+LD      L +N +  LV+DEADRML +GF   +  +   +P 
Sbjct: 130 QSLRAGADVLVATPGRLLDLLASNALKLNRVSALVLDEADRMLSLGFTDELNQVLEALPS 189

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +QTLL+SAT  +E++ ++   L  P    + +     E              ++   L 
Sbjct: 190 KKQTLLYSATFPEEVRALTAKLLHQPLEYHLQS-----EQESTIEQRVITVNREQKTALL 244

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L  Q      +IF + K    +L   L K+G S    HG+  Q +R ++L  FK G I
Sbjct: 245 AHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKSGEI 304

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARG+DI  +  V NFD+P    +Y+HRIGR+GRAG  G A TL++ E+  H
Sbjct: 305 SVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHH 364

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
              IEK  + K+  + + G  ++   PLE +       A++      + TG  +RK+
Sbjct: 365 FGVIEKKNKIKLVREQIPGFEANAEMPLEVL-------AQEKPQAKPEGTGKKKRKQ 414


>gi|229096653|ref|ZP_04227624.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-29]
 gi|228686859|gb|EEL40766.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-29]
          Length = 389

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 104/367 (28%), Positives = 186/367 (50%), Gaps = 11/367 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P +  A   AG+ + T IQ + IP +L+  DV   + TGTGKT +++LP+L  +      
Sbjct: 7   PFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI---NPE 63

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           V+ P+ +IL PTREL  Q+ +  +K+    +++ A LIGG   + Q +KL++   V++ +
Sbjct: 64  VKQPQVVILAPTRELVMQIHEEVQKFTAGTDISGASLIGGADIKRQVEKLKKHPKVIVGS 123

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGRIL+     KL M+ ++ +V DE D+++    +   Q++       RQ + FSATMT 
Sbjct: 124 PGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAAQDVIKSTMRDRQLVFFSATMTK 183

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
             +  + +    P+ + V    S +         TY    ++                 +
Sbjct: 184 AAEDAASDLAVEPQLVRVTRAESKSLVE-----HTYIICERREKNDYVRRIMHMGDVKAV 238

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
            F N    +  +   L+ +     A+H    ++ R   +  F+ G +++++A+D+AARG+
Sbjct: 239 AFLNDPFRLDEITQKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGI 298

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE---K 366
           DI D+ HV + ++P+  + YIHR GRTGR G+ G   +LV +++ + +    K +     
Sbjct: 299 DIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERKLLQFAKKLGIVFT 358

Query: 367 KVDWLNG 373
           K +  NG
Sbjct: 359 KQEMFNG 365


>gi|3775989|emb|CAA09197.1| RNA helicase [Arabidopsis thaliana]
          Length = 411

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 119/374 (31%), Positives = 189/374 (50%), Gaps = 8/374 (2%)

Query: 21  YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI------LEKGRARVRMPR 74
           + KP+PIQ  T P +L   D+ GIA+TG+GKT +F +P +           G ++   P 
Sbjct: 8   FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPT 67

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTRELA Q++D   + G+   L    + GG     Q   +  G D++I TPGR+ 
Sbjct: 68  CLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLR 127

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D      L ++++  +V+DEADRMLDMGF   ++ I S     RQ ++FSAT   ++ K+
Sbjct: 128 DLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKL 187

Query: 195 SENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
           ++ F+       +  +   +    +         +   +  +       +      ++F 
Sbjct: 188 AQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFA 247

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             K     L   L+++G+   +IHGN  Q  R + LS FKEG+  L+VA+D+AARGLDIP
Sbjct: 248 LYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIP 307

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
           DV  V N+  P   E+Y+HRIGRTGRAG+ G A T     +      +  ++ +    + 
Sbjct: 308 DVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLREAGQVVP 367

Query: 373 GDLSSLNPPLEKID 386
            DL      ++K +
Sbjct: 368 ADLLKFGTHVKKKE 381


>gi|114046940|ref|YP_737490.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113888382|gb|ABI42433.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 427

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 146/417 (35%), Positives = 218/417 (52%), Gaps = 19/417 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+   +   + +  Y  PTPIQ  TIP VL   DV   A TG+GKTA+F +P+L 
Sbjct: 10  SFAELGIIAPLCNRLTELTYAAPTPIQAATIPAVLSGRDVLAGANTGSGKTAAFAVPLLQ 69

Query: 62  ILEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQN 116
            L + +         R L+L PTRELA QVAD+F  Y  ++N    +    GG+    Q 
Sbjct: 70  RLFEAKTAEKSAGQVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQM 129

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  GADVL+ TPGR+LD      L +N +  LV+DEADRML +GF   +  +   +P 
Sbjct: 130 QSLRAGADVLVATPGRLLDLLASNALKLNRVLALVLDEADRMLSLGFTDELNQVLEALPA 189

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +QTLL+SAT  +E++ ++   L  P    + +     E              ++   L 
Sbjct: 190 KKQTLLYSATFPEEVRALTAKLLHQPLEYHLQS-----EQESTIEQRVITVNREQKTALL 244

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L  Q      +IF + K    +L   L K+G S    HG+  Q +R ++L  FK G I
Sbjct: 245 AHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKSGEI 304

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARG+DI  +  V NFD+P    +Y+HRIGR+GRAG  G A TL++ E+  H
Sbjct: 305 SVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHH 364

Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
              IEK  + K+  + + G  ++   PLE +       A++      + TG  +RK+
Sbjct: 365 FGVIEKKNKIKLVREQIPGFEANAEMPLEVL-------AQEKPQAKPEGTGKKKRKQ 414


>gi|226291932|gb|EEH47360.1| ATP-dependent RNA helicase DBP10 [Paracoccidioides brasiliensis
           Pb18]
          Length = 895

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 129/401 (32%), Positives = 217/401 (54%), Gaps = 36/401 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPL+L   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 84  FQSMGLNATLLKAIARKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 143

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LI+ P+RELA Q     ++ G+  +L   LL+GG   E Q + +   
Sbjct: 144 LKSHSAKFGA-RALIMSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFEYMSGN 202

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I  ++P +RQTLL
Sbjct: 203 PDIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFSAQLTEILHVLPSSRQTLL 262

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA------------------- 223
           FSAT+   L + +   LQ P  I ++  S  +  +++ F +                   
Sbjct: 263 FSATLPKSLVEFARAGLQEPTLIRLDAESKISPDLQNGFFSIKSSEKEGALLHLLHDIIK 322

Query: 224 ----------------TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
                              +  K+   + +  +   T  + IIF   K +V  L   L +
Sbjct: 323 IPTGETEAGKRTKEELHNPKKRKRSDTVLKSHKESPTEHSTIIFTATKHHVDYLTSVLRQ 382

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            GF+V   +G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D P++++
Sbjct: 383 SGFAVSYAYGSLDQTARKIEVQNFRCGITHILVVTDVAARGIDIPILSNVINYDFPSQSK 442

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            ++HR+GRT RAGR G +++L+ + D  ++  ++  + + +
Sbjct: 443 IFVHRVGRTARAGRTGWSYSLIRESDAPYLLDLQLFLGRPL 483


>gi|218897115|ref|YP_002445526.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|218541908|gb|ACK94302.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
          Length = 389

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 101/367 (27%), Positives = 186/367 (50%), Gaps = 11/367 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P +  A   AG+ + T IQ + IP +L+  DV   + TGTGKT +++LP+L  +      
Sbjct: 7   PFLQEAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI---NPE 63

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           V+ P+ ++L PTREL  Q+ +  +K+     ++ A LIGG   + Q +KL++   V++ +
Sbjct: 64  VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLKKHPRVIVGS 123

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGRIL+     KL M+ ++ +V DE D+++    +  +Q++       RQ + FSAT+T 
Sbjct: 124 PGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQLVFFSATITK 183

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
             +  + +    P+ + +    S +         TY    ++                 +
Sbjct: 184 AAEDAARDLAVEPQLMRITRAESKSLVE-----HTYIICERREKNDYVRRIMHMGDVKAV 238

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
            F N    +  +   L+ +     A+H    ++ R   +  F+ G +++++A+D+AARG+
Sbjct: 239 AFLNDPFRLDEITQKLQFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGI 298

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE---K 366
           DI D+ HV + ++P+  + YIHR GRTGR G+ G   +LV +++ + +    K +     
Sbjct: 299 DIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERKLLQFAKKLGIVFT 358

Query: 367 KVDWLNG 373
           K +  NG
Sbjct: 359 KQEMFNG 365


>gi|145232875|ref|XP_001399810.1| ATP-dependent RNA helicase dbp8 [Aspergillus niger CBS 513.88]
 gi|152013493|sp|A5AA68|DBP8_ASPNC RecName: Full=ATP-dependent RNA helicase dbp8
 gi|134056731|emb|CAK44220.1| unnamed protein product [Aspergillus niger]
          Length = 522

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 120/431 (27%), Positives = 190/431 (44%), Gaps = 19/431 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L ++P ++ ++      KPT IQ   IP +L   D  G ++TG+GKT +F +PML 
Sbjct: 93  SFASLNVAPWLIGSLTTMAVRKPTAIQKACIPEILNGRDCIGGSRTGSGKTIAFSVPMLQ 152

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +          L+L PTRELA Q+ +  +      ++   L+ GG     Q   L +
Sbjct: 153 KWAE---DPFGIFGLVLTPTRELALQIYEQIKAISAPQSMKPLLITGGTDMRPQAVALAQ 209

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT---- 177
              V+I TPGR+ DH N            V        D    P   ++   V       
Sbjct: 210 RPHVVIATPGRLADHINTSGSDTIRGLKRVRMVVLDEADRLLAPGHGSMLPDVETCLSAL 269

Query: 178 -----RQTLLFSATMTDEL-----QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
                RQTLLF+AT+T E+                        +++              
Sbjct: 270 PPSSERQTLLFTATLTPEVRALKSMPRPSTKPPIFVTEISTENNASIPPTLKQTYLKVPM 329

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             ++  L   L    +  K  IIFCN  K    L   L +    V ++H  + Q  R   
Sbjct: 330 THREAFLHVLLSTEANASKPAIIFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSERNAN 389

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L+ F+    +L+VA+D+A+RGLDIP V  V NFDVP   ++Y+HR+GRT RAGR G++ T
Sbjct: 390 LARFRASAARLLVATDVASRGLDIPSVELVVNFDVPRNPDDYVHRVGRTARAGRKGESVT 449

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           LV + D+  + AIE+ + ++++  + +  S+   + +  + +     K     +   G D
Sbjct: 450 LVGQRDVSLVLAIEERVGRQMEEWSEEGVSVEGRVVRTGVLKEVGEAKREAAGEIEEGRD 509

Query: 408 --RRKKNYSSQ 416
              RK+N   +
Sbjct: 510 VLGRKRNKLKK 520


>gi|327472726|gb|EGF18153.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK408]
          Length = 447

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 124/406 (30%), Positives = 191/406 (47%), Gaps = 20/406 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-- 118
            +L++    V+     I  P+RELAAQ+     +        + +       +   +   
Sbjct: 61  QMLDEEAESVQAV---ITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQIGK 117

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTI---ENWLLSTKGRDKNAQIY 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
             +EK+    + ++        P + K D  Q  + R      +KS
Sbjct: 355 RELEKM---GIKFI--------PKMIKDDEFQDTYDRDRRANREKS 389


>gi|259486129|tpe|CBF83723.1| TPA: ATP-dependent RNA helicase eIF4A (EC 3.6.1.-)(Eukaryotic
           initiation factor 4A)(eIF-4A)(Translation initiation
           factor 1) [Source:UniProtKB/Swiss-Prot;Acc:Q5B948]
           [Aspergillus nidulans FGSC A4]
          Length = 398

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P+++  V   G+ +P+ IQ + I  +++ +DV   AQ+GTGKTA+F +  L 
Sbjct: 26  SFDSMELKPELLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATFSISALQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     V+  + LI+ PTRELA Q+       G   N+     IGG         L  
Sbjct: 86  KLDPN---VKACQALIVAPTRELAQQIQKVVIAIGDFMNIQCHACIGGTAVRDDMNALRE 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGRI D   R  L  + +++ ++DEAD ML  GF   I +I  L+P + Q +
Sbjct: 143 GPQIVVGTPGRIHDMIQRRVLKTDQMKMFILDEADEMLSRGFTEQIYDIFQLLPQSTQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 203 LLSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A
Sbjct: 261 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIA 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 321 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 381 QFYSTQIEEMPMNVADL 397


>gi|298504304|gb|ADI83027.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens KN400]
          Length = 460

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 146/409 (35%), Positives = 215/409 (52%), Gaps = 18/409 (4%)

Query: 1   MD---FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           M+   F+ L L   ++  +   GY + TPIQ  ++PL+L   DV   A+TG+GKTA+F +
Sbjct: 1   MNPKAFSSLRLKAPMLRNLASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGI 60

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQN 116
            +L+ L+    RV+    L+L PTRELA QV     +  +  +    L I  G+PF  Q 
Sbjct: 61  GLLSRLDALSFRVQ---ALVLCPTRELADQVGKELRRLARFTDNIKILTICGGVPFGPQL 117

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             LE GA V+I TPGR+LDH  RG L ++ +  LV+DEADRMLDMGF   I  + +  P 
Sbjct: 118 GSLEHGAHVVIGTPGRLLDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDISALIAAAPP 177

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT  D +           +R  V                 Y   S +     
Sbjct: 178 KRQTLLFSATYPDSIAA----MSAGVQREPVEVSVDEVHGEGAIEQVFYEVDSGQRIEAV 233

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + +      ++ +IFCN K     + ++L  +G++  AIHG++DQR R ++L  F   + 
Sbjct: 234 ERILGHYRPESALIFCNTKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRFANRSA 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLDI ++  V N+++    E + HRIGRTGRAG  G A +LV   + + 
Sbjct: 294 SVLVATDVAARGLDIKELSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLVTPRESRL 353

Query: 357 IDAIEKLIEKKVDWLNGDLSSL-----NPPLEKIDIAQHNHARKNNPIP 400
           I+ I  +    +  + GDLS+L      PPL  +     +  RKN   P
Sbjct: 354 IETIADVPGSTI--VRGDLSTLAPLTAKPPLPPMVTLCIDGGRKNKLRP 400


>gi|229109595|ref|ZP_04239184.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock1-15]
 gi|228673843|gb|EEL29098.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock1-15]
          Length = 389

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 99/348 (28%), Positives = 179/348 (51%), Gaps = 8/348 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P +  A   AG+ + T IQ + IP +L+  DV   + TGTGKT +++LP+L  +      
Sbjct: 7   PFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI---NPE 63

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           V+ P+ ++L PTREL  Q+ +  +K+     ++ A LIGG   + Q +KL++   V++ +
Sbjct: 64  VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLKKHPRVIVGS 123

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGRIL+     KL M+ ++ +V DE D+++    +  +Q++       RQ + FSATMT 
Sbjct: 124 PGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQLVFFSATMTK 183

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
             +  + +    P+ + V    S +         TY    ++                 +
Sbjct: 184 VAEDAARDLAVEPQLVRVTRAESKSLVE-----HTYIICERREKNDYVRRIMHMGDVKAV 238

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
            F N    +  +   L+ +     A+H    ++ R   +  F+ G +++++A+D+AARG+
Sbjct: 239 AFLNDPFRLDEITEKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGI 298

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           DI D+ HV + ++P+  + YIHR GRTGR G+ G   +LV  ++ + +
Sbjct: 299 DIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTPQEERKL 346


>gi|126326670|ref|XP_001371368.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 879

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 127/448 (28%), Positives = 214/448 (47%), Gaps = 14/448 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P +
Sbjct: 68  MRFSDFPLSRKTLKGLQEAQYRMVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 127

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            T+             LI+ PTRELA Q  +   K GKN++ +  L+IGG   + +++++
Sbjct: 128 ETLYRLQWTSADGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHESERI 187

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   ++      +            N+++LV+DEADR+LDMGF   +  I   +P  RQ
Sbjct: 188 NQINILICTPGRLLQHMDETTYFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQ 247

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT T  ++ ++   L++P  + V+  +  +            +   +   +    
Sbjct: 248 TLLFSATQTKSVKDLARLSLKDPAYVWVHEKAKYSTPATLDQNYVICELH-QKISVLYSF 306

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA--IHGNIDQRSRMKILSNFKEGTIQ 297
                 K  I+F    K V  L     +    +    +HG   Q  RM++ + F      
Sbjct: 307 LKSHLKKKSIVFFASCKEVQYLFRVFCRLRPGISILALHGKQQQMRRMEVYNEFVRKKSA 366

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++ A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G++  ++   ++K +
Sbjct: 367 VLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEGGESLLILLPSEVKGM 426

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             + +L ++KV      ++    P + IDI +   A     + Q     +R ++ + S  
Sbjct: 427 --VHQLSQRKVPVKEIKIN----PEKLIDIQKKLEAF----LAQDQDLKERAQRCFVSYL 476

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGF 445
             I L +++++  + + +    A SLG 
Sbjct: 477 RSIYLMKNKEVFDVNKLLLPEYALSLGL 504


>gi|71649079|ref|XP_813297.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70878168|gb|EAN91446.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 903

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 124/375 (33%), Positives = 193/375 (51%), Gaps = 9/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL   V+  VL  GY  PTPIQ K IP + Q  DV  +A+TG+GKTA+F++PML +
Sbjct: 109 FQSFGLDKPVLDGVLRLGYNVPTPIQRKAIPPMTQGSDVVAMARTGSGKTAAFLIPMLNL 168

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  ++    R L+L PTREL+ Q+     +  K  +L  A L+GG   E Q + L   
Sbjct: 169 L-KSHSKTVGIRGLVLAPTRELSLQILRFGIQLNKFLDLRFAALVGGNSLEQQFELLGSN 227

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+L       L ++ ++ LV+DEADR+ ++G  P I  +   VP   Q  L
Sbjct: 228 PDIVVATPGRLLHIMEEASLKLSMVKCLVLDEADRLFELGLQPQIVAVMQKVPDACQRAL 287

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS--------KKCAL 234
           FSATM   L + +   L NP  I ++     ++ ++                   KK   
Sbjct: 288 FSATMPSVLAEFTSAGLHNPVVIRLDAEMKLSDKLKQSAFFVRNDEKVAALIVLLKKVIG 347

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +     +  T +  +IF   K +V  L   +E    S  A+HG +DQ +R   +  F   
Sbjct: 348 VAAGDTNDGTAQQALIFVESKFHVDYLQMIMEAYLISCSAVHGQMDQEARRNAVQAFSRR 407

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +M+ +D+AARGLD+P + +V NF  P+  + ++HR+GR  RAGR G A++ +  ED 
Sbjct: 408 ETHVMIVTDVAARGLDLPLLDNVVNFSFPSTPKLFVHRVGRVARAGRSGAAYSFLTFEDF 467

Query: 355 KHIDAIEKLIEKKVD 369
            +   +   I++ + 
Sbjct: 468 PYYVDLMAFIDRPLQ 482


>gi|225450401|ref|XP_002278318.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296089875|emb|CBI39694.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 120/389 (30%), Positives = 204/389 (52%), Gaps = 16/389 (4%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
           A LGL P++V ++   G     PIQ   +   L+  D+   A+TGTGKT +F +P++  L
Sbjct: 119 AQLGLPPRLVESLEQRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKRL 178

Query: 64  EKGRARVRM-------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +   +          PR L+L PTRELA QV    ++       +   + GG+ +  Q 
Sbjct: 179 SEDDEKRTSQRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYL--STVCVYGGVSYITQQ 236

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L RG DV++ TPGRI+D      L +  ++ LV+DEAD+ML +GF   ++ I   +P 
Sbjct: 237 NALSRGVDVVVGTPGRIIDLIKGNSLKLGEVQNLVLDEADQMLAVGFEEDVEVILEKLPS 296

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQ++LFSATM   ++K++  +L NP  I++               A     + K  +L 
Sbjct: 297 ERQSMLFSATMPAWVKKLARKYLDNPLTIDLVGDHDEKLAEGIKLYAIPTTATSKRTILS 356

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            L+         I+F   K++   +  +      +  A+HG+I Q  R + L+ F++G  
Sbjct: 357 DLITVYAKGGKTIVFTQTKRDADEVSMA-LTNSIASEALHGDISQHQRERTLNGFRQGKF 415

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLDIP+V  + ++++PN  E ++HR GRTGRAG+ G A  +      + 
Sbjct: 416 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT 475

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
           + ++E+ +  K ++++       P +E++
Sbjct: 476 VKSLERDVGCKFEFIS------PPAIEEV 498


>gi|329938804|ref|ZP_08288200.1| ATP-dependent RNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329302295|gb|EGG46187.1| ATP-dependent RNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 673

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 148/459 (32%), Positives = 223/459 (48%), Gaps = 18/459 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   +V  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L
Sbjct: 32  LTFADLGLPEGIVRKLAQNGVTAPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPAL 91

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L   R     PR +I+ PTRELA QVAD  + YG    L + ++ GG     Q   LE
Sbjct: 92  ATLAGARTEKHKPRAVIMTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALE 151

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVL+ TPGR+ D  NRG   + N++I V+DEAD+M D+GF+P +  +   +P   Q 
Sbjct: 152 RGVDVLVATPGRLRDLINRGACSLENVQIAVLDEADQMSDLGFLPEVTELLDQIPAGGQR 211

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM +E++ + + +L NP   EV+       T+ H  +       K          
Sbjct: 212 MLFSATMENEIKTLVDRYLNNPVHHEVDAAQGAVTTMSHHILIV-----KPKDKAPVTAA 266

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   +     +   L   G    A+HG + Q +R + L++FK+G + ++V
Sbjct: 267 IASRKGRTIIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLV 326

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L      +    I
Sbjct: 327 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLSLPHQRRQ---I 383

Query: 361 EKLIEKK-VDWLNGDLSS---LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            +L+E   VD     + S    +P     ++A+   AR    +  +S G   ++      
Sbjct: 384 FRLMEDAGVDASRHVIQSAGAFDP-----EVAEITGARSMTEVQAESAGNAAQQAEREVA 438

Query: 417 KSHIPLKES-EKISKLQQDIQENDADSLGFRGNMPAFML 454
                L+ +  +  +L+++     A +   RG  P   L
Sbjct: 439 YLTKQLERATRRAGELREEADRLVARAARERGEDPEAAL 477


>gi|299470469|emb|CBN78461.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 1012

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 135/437 (30%), Positives = 226/437 (51%), Gaps = 41/437 (9%)

Query: 3    FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
            + +  L   V+ A+ + GY KP+PIQ + IP+ ++R D+ GIA+TG+GKTA+F +PM+  
Sbjct: 578  WEEGHLPSSVMEAIRELGYEKPSPIQRQAIPIGMERRDIIGIAETGSGKTAAFGIPMIAY 637

Query: 63   L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +       + R   + P  LI+ PTRELA Q+ +  +K+ K   L    ++GG   EAQ 
Sbjct: 638  ILSLEAGMRDRVADQGPLALIMAPTRELAIQIEEECKKFCKFAGLNTVCVVGGQDIEAQA 697

Query: 117  KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
              L +G +++I TPGR+ D   +  L++N    +V+DEADRM+DMGF   +  +   +  
Sbjct: 698  FTLRKGVEIIIGTPGRLNDCVEKHYLVLNQCNYVVLDEADRMIDMGFEDQVLAVLEAMGG 757

Query: 177  T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
            T                          R T +FSATM   ++K+++ +L++P  +++   
Sbjct: 758  TLKADDAELAYKQEKKAKQARSAADLVRVTAMFSATMPAAVEKMAKKYLRHPAIVQIGDE 817

Query: 211  SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
             +         V    +  KK  + +  L+  D     ++F N KK+   L   LE+ GF
Sbjct: 818  DTGKNRRIEQRVLWMTEAQKKTKVTEL-LRGHDKEDRVLVFINTKKSADMLGRQLEQAGF 876

Query: 271  SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
                +HG   Q  R + L +F++G   ++VA+D+A+RGLDIPDV  + N+++PN+ E Y 
Sbjct: 877  PTGVLHGGKTQDQREENLESFRDGDYTVLVATDVASRGLDIPDVKVI-NYELPNKIETYC 935

Query: 331  HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
            HRIGRTGRAG+ G A + + + D + +  +        ++L    S +   L K + AQ 
Sbjct: 936  HRIGRTGRAGKDGVATSFLTEHDEEIMFGLR-------EYLQSTESHVPQQLMKHNAAQA 988

Query: 391  NHARKNNPIPQKSTGFD 407
                + +     ++  D
Sbjct: 989  AVGARRDDGSLVNSKRD 1005


>gi|254508401|ref|ZP_05120522.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
 gi|219548714|gb|EED25718.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
          Length = 417

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 134/367 (36%), Positives = 209/367 (56%), Gaps = 11/367 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL P +V  + +  Y++PTPIQ   IP VL+  D  G A TG+GKTA+F LP+L 
Sbjct: 9   TFADLGLIPTLVERLEELEYLQPTPIQSYAIPHVLEGKDFVGGANTGSGKTAAFSLPILQ 68

Query: 62  IL----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQ 115
            +    +  R+R      LIL PTRELA+QVA N + Y  +         + GG+    Q
Sbjct: 69  KILEQGDSNRSRGNFVSHLILVPTRELASQVAYNVKSYSYHLRDKVKTVAVFGGVSVNPQ 128

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G+D+++ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  I +L+P
Sbjct: 129 MLSLRGGSDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTDELNKILALLP 188

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             +QTLLFSAT  +++  ++++ L +P  +++ +  ++        V    + +    L+
Sbjct: 189 EKKQTLLFSATFPEKVTTLAQHLLSDPVEVQLQSAEASTLVQRVFSVNKGEKTAVLAHLI 248

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
           ++        +  +IF N K    +L   L K+G +    HG+  Q +R ++L  FK G 
Sbjct: 249 KKHQW-----RQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKSGE 303

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           IQ+++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G   +L+  +D  
Sbjct: 304 IQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDDYH 363

Query: 356 HIDAIEK 362
           H   IEK
Sbjct: 364 HFKVIEK 370


>gi|242784404|ref|XP_002480380.1| ATP dependent RNA helicase (Dbp8), putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218720527|gb|EED19946.1| ATP dependent RNA helicase (Dbp8), putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 538

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 126/420 (30%), Positives = 202/420 (48%), Gaps = 17/420 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L ++P +V ++      +PT IQ   IP +LQ  D  G ++TG+GKT +F +P+L 
Sbjct: 109 TFANLNVAPWLVKSLSTMAIRRPTAIQKSCIPEILQGKDCIGGSRTGSGKTIAFAVPILQ 168

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +          ++L PTRELA Q+ + F+      +L   L+ GG     Q   L +
Sbjct: 169 KWAE---DPFGIFAVVLTPTRELALQIFEQFKAISAPQSLKPVLITGGTDMRPQAIALSQ 225

Query: 122 GADVLICTPGRILDHFNRGKLLM----NNIEILVIDEADRMLDMGFIPYIQNITSL---- 173
              V+I TPGR+ DH            N + ++V+DEADR+L  G    + ++ +     
Sbjct: 226 RPHVIIATPGRLADHIRTSGEDTIVGLNRVRMIVMDEADRLLTSGHGSMLPDVETCLSAL 285

Query: 174 -VPFTRQTLLFSATMTDELQ-----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
                RQTLLF+AT+T E++         N              +               
Sbjct: 286 PPSSERQTLLFTATVTPEVRALKSVPRPANRPPIHVTEIGTENIAPIPPTLKQTYLQVPM 345

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             ++  L   L    ++ K  IIFCN+ K    L   L +    V ++H  + Q  R   
Sbjct: 346 THREAFLHVLLSTEGNSSKPAIIFCNRTKTADLLERMLRRLSHRVTSLHSLLPQSERTAN 405

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           LS F+    +L+VA+D+A+RGLDIP+V  V NFDVP   ++Y+HR+GRT RAGR G++ T
Sbjct: 406 LSRFRASAARLLVATDVASRGLDIPNVSLVINFDVPRNPDDYVHRVGRTARAGRTGESVT 465

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           LV + D++ + AIEK + +++     +  S+   + K  + +     K +   +   G D
Sbjct: 466 LVGQRDVQLVLAIEKRVGRQMVQWEEEGVSVESRVVKGGVLKEVGEAKRDAAREIDEGRD 525


>gi|322828077|gb|EFZ32017.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
          Length = 621

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 109/386 (28%), Positives = 172/386 (44%), Gaps = 19/386 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F+D  L P  V A+   G     P+Q  T   +++  +V   A+TG+GKT +F +P+   
Sbjct: 52  FSDFDLLPNTVEALKSQGITALFPVQALTYEAIMKGSNVLVQARTGSGKTLAFGIPIVEK 111

Query: 60  ---LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
              +T   +   R R P  +I  PTRELA QV D      K + +T          + + 
Sbjct: 112 LARMTKSNEQPVRGRGPAAVIFCPTRELAIQVRDVIAGISKGFVVTALYGGVAYSTQERA 171

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV-- 174
                G DV++ TPGR  D   +  L ++ ++++ +DEAD MLD+GF   I+ +   V  
Sbjct: 172 L--YSGVDVVVATPGRAKDFLEKRTLCLDRVKVVCLDEADHMLDIGFKDDIELLLQKVAE 229

Query: 175 -------PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
                    T QTLLFSAT+ + +   S    +      V   +  A      +      
Sbjct: 230 QNGSTEGNPTHQTLLFSATVPEWVHTCSFIPRKKEFIDMVGQGTMRAANTIKFYRRKCHF 289

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
               C L   +          ++F N KK   +L  +  K         G++ Q  R   
Sbjct: 290 SEVSCMLADLVKVYSGRHGRTLVFTNTKKECHDLSINNTKLDSQCLH--GDMQQEQREST 347

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           + +F++    +++A+D+AARGLD+P V  V     P   + +IHR GRTGRAGR G    
Sbjct: 348 MKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVL 407

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNG 373
           L   +D   ++ IE+  + K + L  
Sbjct: 408 LHQPKDEYIVERIERHAKIKFEVLPA 433


>gi|254388923|ref|ZP_05004154.1| hypothetical protein SSCG_01341 [Streptomyces clavuligerus ATCC
           27064]
 gi|197702641|gb|EDY48453.1| hypothetical protein SSCG_01341 [Streptomyces clavuligerus ATCC
           27064]
          Length = 891

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 138/412 (33%), Positives = 212/412 (51%), Gaps = 20/412 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+  +   A+   G + P PIQ  T+P+ L   DV G A+TGTGKT  F LP+L 
Sbjct: 45  TFRDLGILAETAEALEAVGILNPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLE 104

Query: 62  ILE----------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
            +           +       P+ L++ PTREL  QV ++    GK  N+ V  + GG  
Sbjct: 105 RVTVPADVEAGRARPDQLSEAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRA 164

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q + L +G DV++ TPGR+LD   + KL ++ +  LV+DEAD MLD+GF+P ++ I 
Sbjct: 165 YEPQVEALRKGVDVIVGTPGRLLDLAGQKKLDLSQVRALVLDEADEMLDLGFLPDVEKII 224

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            L+P  RQT+LFSATM   +  ++  ++  P  I    P     T+ +     Y  +S  
Sbjct: 225 QLLPAKRQTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANITQRVYRAHSMD 284

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              +   +   +     +IFC  K+   ++   L ++GF+  A+HG++ Q +R + L  F
Sbjct: 285 KPEMVSRILQAEGRGLAMIFCRTKRTAADIADQLARRGFASGAVHGDLGQGAREQALRAF 344

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++V +D+AARG+D+  V HV N+  P   + Y+HR+GRTGRAG  G A TLV  
Sbjct: 345 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRVGRTGRAGASGTAVTLVDW 404

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           +DI     I K ++ K             P+E    + H       P   K 
Sbjct: 405 DDIPRWQLINKALDLK----------FPDPVETYSTSPHLFEELGIPAGTKG 446


>gi|325697687|gb|EGD39572.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK160]
          Length = 447

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 126/407 (30%), Positives = 190/407 (46%), Gaps = 20/407 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-- 118
            +L++    V+    LI  P+RELAAQ+     +        + +       +   +   
Sbjct: 61  QMLDEEADSVQ---ALITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQIGK 117

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTI---ENWLLSTKGRDKNAQIY 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
             +EK +  K            P + K D  Q  + R      +KS 
Sbjct: 355 RELEK-MGIK----------FTPKMIKDDEFQDTYDRDRRANREKSR 390


>gi|261328385|emb|CBH11362.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 948

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 120/469 (25%), Positives = 210/469 (44%), Gaps = 38/469 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   GL+  V+ A+ + G+ +P  +Q    P+++   D+  +A+TG+GKT S++LP++ 
Sbjct: 311 SWTGSGLADSVLEALAEGGFQQPFAVQSLGAPVLMSGRDLLVVAKTGSGKTLSYLLPLIR 370

Query: 62  ILEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                    +   P TL+L PT EL  Q+    EK     +L +    G +P     K+ 
Sbjct: 371 HCMGQRACKKGEGPITLVLVPTHELGCQIVRVAEKLCSAAHLRLVASYGLVPLSDNIKQC 430

Query: 120 ERGADVLICTPGRILDHFNRGKLLM---NNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             G +V++ TPGR+LD    G   +     +  +V+DEADRM D GF  +++     +  
Sbjct: 431 RAGCEVMVSTPGRLLDLLTVGGGGVLSLRFVSFVVVDEADRMFDSGFAEHVEAFLKNIRP 490

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKR-----------IEVNTPSSTAETIEHCFVATY 225
            RQ  +FSATM  EL+KV    L +P                       E +    V + 
Sbjct: 491 DRQLAMFSATMPKELKKVICRHLHDPIEITVGGKPTPASNVEQRFFFFDEELYDVDVESR 550

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV---NLCHSLEKQGFSVCAIHGNIDQR 282
           ++  K   LLQ L +     ++ I+   Q+K          S       +  ++  +D  
Sbjct: 551 SEDKKFLKLLQILGEEGGNGEHLILIFTQQKKECDELFARLSACGYNKRIAVLYSGMDPI 610

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R   L  F  G   +++A+ +A RGLDIP +  V N+ +P+  E Y+HRIGRTGRAGR 
Sbjct: 611 DREFALEYFSPGNQFILIATGVAERGLDIPYLELVINYTLPDHYEAYVHRIGRTGRAGRK 670

Query: 343 GKAFTLVAK-EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           GKA +   + +D +    + + +E+    ++ +L              +  A K   + +
Sbjct: 671 GKAVSFFTRGKDDELAADLCEGLERAEQQVSEEL--------------YERATKVRELRK 716

Query: 402 KSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMP 450
             T     + N    + ++  K+    ++ Q++  +    + G   +MP
Sbjct: 717 GGTA----RHNALFHRGYMRAKKQRFTNRDQKEQFKTALRAAGLEDDMP 761


>gi|171778129|ref|ZP_02919386.1| hypothetical protein STRINF_00221 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283111|gb|EDT48535.1| hypothetical protein STRINF_00221 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 447

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 119/382 (31%), Positives = 180/382 (47%), Gaps = 11/382 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D    P +  A+ +  +  PT +Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFNDFNFKPYIRVALAELKFKNPTEVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNK 117
             L++    V++    I  P+REL  Q+    ++        + +              K
Sbjct: 61  EKLDETSDNVQVV---ITAPSRELVTQIYQATKQIADKSETEIRVANYVGGTDKLRQIEK 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L +      V+DEAD  LDMGF+  +  I S +P  
Sbjct: 118 LKSSQPHIVIGTPGRIYDLVKSGDLEIYKAHTFVVDEADMTLDMGFLDTVDKIASTLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEKIKTTTVIADTI---DNWLVSTKGRDKNAQIL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K+    L   L   G  V  IHG I  R R + ++  K+ + +
Sbjct: 235 EITKALNPYLAMIFVNTKERADELHSYLVSNGLKVAKIHGGIPPRERKRTMNQTKKLSYE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G +G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLNGIAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWL--NGDLSS 377
             +EKL  K V  +  NG+   
Sbjct: 355 RELEKLGIKFVPKMLKNGEFQD 376


>gi|85792253|gb|ABC84194.1| eukaryotic translation initiation factor 4A isoform 2 [Sus scrofa]
          Length = 407

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 196/378 (51%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L   ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 34  NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF-EAQNKKLE 120
            LE      +    L+L PTRELA Q+       G     T    IGG        K   
Sbjct: 94  QLEIEFKETQA---LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQA 150

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I  I   +  + Q 
Sbjct: 151 EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQV 210

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I+  ++    +  K   L      
Sbjct: 211 VLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDL--Y 268

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 269 ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLI 328

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V +ED + +  I
Sbjct: 329 TTDLLARGIDVQQVPLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI 388

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      V+ +  +++ L
Sbjct: 389 ETFYNTTVEEMPMNVADL 406


>gi|72389470|ref|XP_845030.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|62176713|gb|AAX70813.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
 gi|70801564|gb|AAZ11471.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
          Length = 948

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 120/469 (25%), Positives = 210/469 (44%), Gaps = 38/469 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +   GL+  V+ A+ + G+ +P  +Q    P+++   D+  +A+TG+GKT S++LP++ 
Sbjct: 311 SWTGSGLADSVLEALAEGGFQQPFAVQSLGAPVLMSGRDLLVVAKTGSGKTLSYLLPLIR 370

Query: 62  ILEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                    +   P TL+L PT EL  Q+    EK     +L +    G +P     K+ 
Sbjct: 371 HCMGQRACKKGEGPITLVLVPTHELGCQIVRVAEKLCSAAHLRLVASYGLVPLSDNIKQC 430

Query: 120 ERGADVLICTPGRILDHFNRGKLLM---NNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             G +V++ TPGR+LD    G   +     +  +V+DEADRM D GF  +++     +  
Sbjct: 431 RAGCEVMVSTPGRLLDLLTVGGGGVLSLRFVSFVVVDEADRMFDSGFAEHVEAFLKNIRP 490

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKR-----------IEVNTPSSTAETIEHCFVATY 225
            RQ  +FSATM  EL+KV    L +P                       E +    V + 
Sbjct: 491 DRQLAMFSATMPKELKKVICRHLHDPIEITVGGKPTPASNVEQRFFFFDEELYDVDVESR 550

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV---NLCHSLEKQGFSVCAIHGNIDQR 282
           ++  K   LLQ L +     ++ I+   Q+K          S       +  ++  +D  
Sbjct: 551 SEDKKFLKLLQILGEEGGNGEHLILIFTQQKKECDELFARLSACGYNKRIAVLYSGMDPI 610

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R   L  F  G   +++A+ +A RGLDIP +  V N+ +P+  E Y+HRIGRTGRAGR 
Sbjct: 611 DREFALEYFSPGNQFILIATGVAERGLDIPYLELVINYTLPDHYEAYVHRIGRTGRAGRK 670

Query: 343 GKAFTLVAK-EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
           GKA +   + +D +    + + +E+    ++ +L              +  A K   + +
Sbjct: 671 GKAVSFFTRGKDDELAADLCEGLERAEQQVSEEL--------------YERATKVRELRK 716

Query: 402 KSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMP 450
             T     + N    + ++  K+    ++ Q++  +    + G   +MP
Sbjct: 717 GGTA----RHNALFHRGYMRAKKQRFTNRDQKEQFKTALRAAGLEDDMP 761


>gi|294630456|ref|ZP_06709016.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
 gi|292833789|gb|EFF92138.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
          Length = 514

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 118/359 (32%), Positives = 184/359 (51%), Gaps = 5/359 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L L  +++ A+   G  +P PIQ  T+P  L   DV G  +TG+GKT +F L +L 
Sbjct: 76  TFAELDLPARLLTALEREGVTEPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLA 135

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                RA  R P  L+L PTRELA QV D    Y +   L  A ++GG+    Q   L  
Sbjct: 136 RTAGRRAEPRQPLALVLVPTRELAQQVTDALTPYARALGLRAATVVGGMSIGRQAGALRG 195

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA++++ TPGR+ D  +RG   ++ + + V+DEAD+M DMGF+P +  +   V    Q L
Sbjct: 196 GAELVVATPGRLKDLIDRGDCRLDEVAVTVLDEADQMADMGFMPQVTALLDQVRPDGQRL 255

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +  +   +L +P    V+  +    T+EH  +  +          +   + 
Sbjct: 256 LFSATLDRNIDLLVRRYLSDPVVHSVDPSAGAVTTMEHHVLHVHDTDK-----HRTTTEI 310

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F + K  V  L   L   G     +HG   Q  R + L+ FK G + ++VA
Sbjct: 311 AARDGRTIMFLDTKHAVDRLTKHLLNSGVRAAGLHGGKSQPQRNRTLTQFKTGQVTVLVA 370

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV  +  + ++ +
Sbjct: 371 TNVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPDQRRAMNRL 429


>gi|115645582|ref|XP_001201765.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
 gi|115666529|ref|XP_786714.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 492

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 98/397 (24%), Positives = 171/397 (43%), Gaps = 19/397 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L   ++  V + G+  P+ IQ   +PL++     ++   +Q+GTGKTA+FVL M
Sbjct: 101 SFEELRLKQALLKGVYEMGFNAPSKIQETALPLLMADPPKNMIAQSQSGTGKTAAFVLTM 160

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++        P+ L L PT ELA Q+    E+ GKN                + +K+
Sbjct: 161 LSRVDNNHY----PQALCLAPTYELAIQIGKVVEEMGKNLPDINVRYAVRGQRVQRGEKV 216

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   +             R   L       + +    +   G       I   +P   Q
Sbjct: 217 NQQIIIGTPGTTLDWCLKLRSIDLSRMKVFCLDEADVMIATQGHQDQSIRIQKKLPSACQ 276

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT  + + K +   + +P  I +     +   I+  +V    +  K  +     +
Sbjct: 277 MMLFSATYDNTVMKFATTVVPDPVVIRLRREEESLSNIKQYYVLCSNKEEKAES--LSNI 334

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   +IFC  K+N   L   + ++G +V  + G++    R+ +L  ++ G  +++
Sbjct: 335 YGTITIGQAMIFCQTKRNANWLAERMTREGHAVALLSGDLTVEQRVAVLERYRAGKEKIL 394

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           + +++ ARG+DI  V  V NFD+P         E Y+HRIGRTGR G+ G A   V    
Sbjct: 395 ITTNVMARGIDIEQVTVVVNFDLPVDMNGQADCETYLHRIGRTGRFGKSGLAINFVDGPR 454

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSL----NPPLEKI 385
            +  +  IE   E  +  +   +  L       +EKI
Sbjct: 455 SMDIMKIIENHFESSLKNMRRQIERLYTDDAEEIEKI 491


>gi|226183|prf||1413329A gene vasa
          Length = 660

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 117/368 (31%), Positives = 199/368 (54%), Gaps = 10/368 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++  V  +G+  PTPIQ  +IP++    D+   AQTG+GKTA+F+LP+L+ 
Sbjct: 247 FTSADLRDIIIDNVNKSGFKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSK 306

Query: 63  LEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L +    +    P+ +I+ PTRELA Q+ +   K+     L + ++ GG  F  QN+ + 
Sbjct: 307 LLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECIT 366

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG  V+I TPGR+LD  +R  +   +   +V+DEADRMLDMGF   ++ I + V    + 
Sbjct: 367 RGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEH 426

Query: 181 L--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
              +FSAT  +E+Q+++  FL+             ++        T  + +K     + +
Sbjct: 427 QTLMFSATFPEEIQRMAGEFLKLRFVAIGIVGGRCSDVK-----QTIYEVNKYAKRSKLI 481

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               +     I+F   K+    L   L ++ F   +I G+  Q  R + L +FK G++++
Sbjct: 482 EILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIRGDRLQSQREQALRDFKNGSMKV 541

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHI 357
           ++A+ +A+RGLDI ++ HV N+D+P++ ++Y+HRIGRTG  G  G+A +    E D    
Sbjct: 542 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGCVGNWGRAQSFFDPEKDRAIA 601

Query: 358 DAIEKLIE 365
             + K++E
Sbjct: 602 ADLVKILE 609


>gi|316964502|gb|EFV49578.1| spliceosome RNA helicase BAT1 [Trichinella spiralis]
          Length = 640

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 90/386 (23%), Positives = 165/386 (42%), Gaps = 14/386 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ +++D G+  P+ +Q + IP  +   DV   A++G GKTA FV+  L  
Sbjct: 55  FRDFLLKPELLRSIVDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVIATLQQ 114

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L      V               ++  + F KY     + V      +  +    +    
Sbjct: 115 LNAVEGEVHCLVMCHTRELAFQISKEYERFCKYMPKVKVAVFFGGTNVKKDEDMLRNNTP 174

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    NR   L +    ++ +    + D+     +Q I  + P  +Q ++
Sbjct: 175 HIVVGTPGRLLALARNRVLSLKSIKYFILDECDRMLGDLDMRRDVQEIYKMTPREKQVMM 234

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ EL+ V + F+Q+P  + V+  +         +     +  K   L +      
Sbjct: 235 FSATLSKELRPVCKKFMQDPMEVYVDDEAKLTLHGLQQYYVKLKETEKNKKLFEL--LDV 292

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH ++ Q  R+     F++   +++VA+
Sbjct: 293 LEFNQVVIFVRSVQRCMALNELLTEQNFPSIAIHRSMAQEERLSRYQQFRDFHKRILVAT 352

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHR-----------IGRTGRAGRHGKAFTLVAK 351
           +L  RG+DI  V  VFN+D+P  ++ Y+HR           + R GR G  G A T V+ 
Sbjct: 353 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVNMNAFTLKIDVARAGRFGTKGLAITFVSD 412

Query: 352 E-DIKHIDAIEKLIEKKVDWLNGDLS 376
           E D K ++ ++   +  +  L  +L 
Sbjct: 413 ESDAKVLNDVQDRFDVSIGELPDELD 438


>gi|154324248|ref|XP_001561438.1| hypothetical protein BC1G_00523 [Botryotinia fuckeliana B05.10]
 gi|160419159|sp|A6RJA2|PRP28_BOTFB RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|150842752|gb|EDN17945.1| hypothetical protein BC1G_00523 [Botryotinia fuckeliana B05.10]
          Length = 783

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 120/395 (30%), Positives = 205/395 (51%), Gaps = 31/395 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++++  L  +++  +   GY +P+ +Q   IP+ LQ  D+ G+A TG+GKTA+F+LP+L 
Sbjct: 381 NWSESKLPKRLLDVIHQVGYDEPSAVQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLV 440

Query: 62  ILE-----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +          +   P  +IL PTRELA Q+    +K+      T   ++GG   E Q+
Sbjct: 441 YISELPPLNEFTKNDGPYAIILAPTRELAQQIEVEAKKFATPLGFTCVSIVGGHSLEEQS 500

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY---------- 166
             L  GA+++I TPGR++D   R  L++     +++DEADRM+D+GF             
Sbjct: 501 YNLRNGAEIIIATPGRLVDCIERRVLVLGQCCYIIMDEADRMIDLGFEESVNKILDALPV 560

Query: 167 ---------------IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
                          +          RQT++++ATM   ++K+++ +L+ P  + +    
Sbjct: 561 SNEKPDTDDAEDAQAMSRHLGGKDRYRQTMMYTATMPPAVEKIAKKYLRRPAIVTIGNIG 620

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
              ET+E       A   K+   L ++L S +     I+F N K+N   +   ++  GF+
Sbjct: 621 EAVETVEQRV-EFVAGEDKRKKRLNEILASGEFAPPIIVFVNIKRNCDAVARDIKHMGFT 679

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
              +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y H
Sbjct: 680 SVTLHGSKTQEQREAALASVRSGATNVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTH 739

Query: 332 RIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RIGRTGRAG+ G A T +  ED   +  +++++ K
Sbjct: 740 RIGRTGRAGKSGVAITFLGNEDSDTMYDLKQMLTK 774


>gi|323346404|gb|EGA80692.1| Ded1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 608

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 138/419 (32%), Positives = 213/419 (50%), Gaps = 21/419 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F    L   ++  +  A + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+  
Sbjct: 147 EFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLS 206

Query: 60  ----------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                              R   P  +I+ PTRELA Q+ D  +K+     +   ++ GG
Sbjct: 207 ESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGG 266

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
            P   Q +++ERG D+L+ TPGR+ D   RGK+ + N++ LV+DEADRMLDMGF P I++
Sbjct: 267 SPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRH 326

Query: 170 ITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I      T     QTL+FSAT   ++Q ++ +FL +   + V    ST+E I    +   
Sbjct: 327 IVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVE 386

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            Q  K   L      +       +IF   K+    L   L  Q F   AIHG+  Q  R 
Sbjct: 387 NQDKKSALLDLLSASTDG---LTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERE 443

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L+ F+ G   L+VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A
Sbjct: 444 RALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLA 503

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS--LNPPLEKIDIAQHNHARKNNPIPQK 402
                 E+   +  + +++ +    +   L    ++ P  + +  +    R NN   +K
Sbjct: 504 TAFFNSENSNIVKGLHEILTEANQEVPSFLKDAMMSAPGSRSNSRRGGFGRNNNRDYRK 562


>gi|323307275|gb|EGA60555.1| Ded1p [Saccharomyces cerevisiae FostersO]
          Length = 605

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 138/419 (32%), Positives = 213/419 (50%), Gaps = 21/419 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F    L   ++  +  A + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+  
Sbjct: 144 EFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLS 203

Query: 60  ----------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                              R   P  +I+ PTRELA Q+ D  +K+     +   ++ GG
Sbjct: 204 ESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGG 263

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
            P   Q +++ERG D+L+ TPGR+ D   RGK+ + N++ LV+DEADRMLDMGF P I++
Sbjct: 264 SPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRH 323

Query: 170 ITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I      T     QTL+FSAT   ++Q ++ +FL +   + V    ST+E I    +   
Sbjct: 324 IVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVE 383

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            Q  K   L      +       +IF   K+    L   L  Q F   AIHG+  Q  R 
Sbjct: 384 NQDKKSALLDLLSASTDG---LTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERE 440

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L+ F+ G   L+VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A
Sbjct: 441 RALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLA 500

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS--LNPPLEKIDIAQHNHARKNNPIPQK 402
                 E+   +  + +++ +    +   L    ++ P  + +  +    R NN   +K
Sbjct: 501 TAFFNSENSNIVKGLHEILTEANQEVPSFLKDAMMSAPGSRSNSRRGGFGRNNNRDYRK 559


>gi|323302935|gb|EGA56739.1| Ded1p [Saccharomyces cerevisiae FostersB]
          Length = 604

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 138/419 (32%), Positives = 213/419 (50%), Gaps = 21/419 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F    L   ++  +  A + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+  
Sbjct: 143 EFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLS 202

Query: 60  ----------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                              R   P  +I+ PTRELA Q+ D  +K+     +   ++ GG
Sbjct: 203 ESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGG 262

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
            P   Q +++ERG D+L+ TPGR+ D   RGK+ + N++ LV+DEADRMLDMGF P I++
Sbjct: 263 SPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRH 322

Query: 170 ITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I      T     QTL+FSAT   ++Q ++ +FL +   + V    ST+E I    +   
Sbjct: 323 IVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVE 382

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            Q  K   L      +       +IF   K+    L   L  Q F   AIHG+  Q  R 
Sbjct: 383 NQDKKSALLDLLSASTDG---LTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERE 439

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L+ F+ G   L+VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A
Sbjct: 440 RALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLA 499

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS--LNPPLEKIDIAQHNHARKNNPIPQK 402
                 E+   +  + +++ +    +   L    ++ P  + +  +    R NN   +K
Sbjct: 500 TAFFNSENSNIVKGLHEILTEANQEVPSFLKDAMMSAPGSRSNSRRGGFGRNNNRDYRK 558


>gi|259149685|emb|CAY86489.1| Ded1p [Saccharomyces cerevisiae EC1118]
          Length = 604

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 138/419 (32%), Positives = 213/419 (50%), Gaps = 21/419 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F    L   ++  +  A + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+  
Sbjct: 143 EFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLS 202

Query: 60  ----------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                              R   P  +I+ PTRELA Q+ D  +K+     +   ++ GG
Sbjct: 203 ESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGG 262

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
            P   Q +++ERG D+L+ TPGR+ D   RGK+ + N++ LV+DEADRMLDMGF P I++
Sbjct: 263 SPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRH 322

Query: 170 ITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I      T     QTL+FSAT   ++Q ++ +FL +   + V    ST+E I    +   
Sbjct: 323 IVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVE 382

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            Q  K   L      +       +IF   K+    L   L  Q F   AIHG+  Q  R 
Sbjct: 383 NQDKKSALLDLLSASTDG---LTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERE 439

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L+ F+ G   L+VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A
Sbjct: 440 RALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLA 499

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS--LNPPLEKIDIAQHNHARKNNPIPQK 402
                 E+   +  + +++ +    +   L    ++ P  + +  +    R NN   +K
Sbjct: 500 TAFFNSENSNIVKGLHEILTEANQEVPSFLKDAMMSAPGSRSNSRRGGFGRNNNRDYRK 558


>gi|160380641|sp|A6ZP47|DED1_YEAS7 RecName: Full=ATP-dependent RNA helicase DED1
 gi|151945294|gb|EDN63537.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
 gi|190407515|gb|EDV10782.1| hypothetical protein SCRG_01592 [Saccharomyces cerevisiae RM11-1a]
 gi|207341041|gb|EDZ69208.1| YOR204Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256269590|gb|EEU04872.1| Ded1p [Saccharomyces cerevisiae JAY291]
 gi|323335425|gb|EGA76711.1| Ded1p [Saccharomyces cerevisiae Vin13]
 gi|323352139|gb|EGA84676.1| Ded1p [Saccharomyces cerevisiae VL3]
          Length = 604

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 138/419 (32%), Positives = 213/419 (50%), Gaps = 21/419 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F    L   ++  +  A + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+  
Sbjct: 143 EFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLS 202

Query: 60  ----------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                              R   P  +I+ PTRELA Q+ D  +K+     +   ++ GG
Sbjct: 203 ESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGG 262

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
            P   Q +++ERG D+L+ TPGR+ D   RGK+ + N++ LV+DEADRMLDMGF P I++
Sbjct: 263 SPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRH 322

Query: 170 ITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I      T     QTL+FSAT   ++Q ++ +FL +   + V    ST+E I    +   
Sbjct: 323 IVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVE 382

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            Q  K   L      +       +IF   K+    L   L  Q F   AIHG+  Q  R 
Sbjct: 383 NQDKKSALLDLLSASTDG---LTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERE 439

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L+ F+ G   L+VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A
Sbjct: 440 RALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLA 499

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS--LNPPLEKIDIAQHNHARKNNPIPQK 402
                 E+   +  + +++ +    +   L    ++ P  + +  +    R NN   +K
Sbjct: 500 TAFFNSENSNIVKGLHEILTEANQEVPSFLKDAMMSAPGSRSNSRRGGFGRNNNRDYRK 558


>gi|6324778|ref|NP_014847.1| Ded1p [Saccharomyces cerevisiae S288c]
 gi|118411|sp|P06634|DED1_YEAST RecName: Full=ATP-dependent RNA helicase DED1; AltName: Full=DEAD
           box protein 1
 gi|3647|emb|CAA40546.1| Ded1p (Spp81p) [Saccharomyces cerevisiae]
 gi|1420479|emb|CAA99419.1| DED1 [Saccharomyces cerevisiae]
 gi|285815083|tpg|DAA10976.1| TPA: Ded1p [Saccharomyces cerevisiae S288c]
          Length = 604

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 138/419 (32%), Positives = 213/419 (50%), Gaps = 21/419 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F    L   ++  +  A + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+  
Sbjct: 143 EFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLS 202

Query: 60  ----------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                              R   P  +I+ PTRELA Q+ D  +K+     +   ++ GG
Sbjct: 203 ESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGG 262

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
            P   Q +++ERG D+L+ TPGR+ D   RGK+ + N++ LV+DEADRMLDMGF P I++
Sbjct: 263 SPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRH 322

Query: 170 ITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I      T     QTL+FSAT   ++Q ++ +FL +   + V    ST+E I    +   
Sbjct: 323 IVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVE 382

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            Q  K   L      +       +IF   K+    L   L  Q F   AIHG+  Q  R 
Sbjct: 383 NQDKKSALLDLLSASTDG---LTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERE 439

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L+ F+ G   L+VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A
Sbjct: 440 RALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLA 499

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS--LNPPLEKIDIAQHNHARKNNPIPQK 402
                 E+   +  + +++ +    +   L    ++ P  + +  +    R NN   +K
Sbjct: 500 TAFFNSENSNIVKGLHEILTEANQEVPSFLKDAMMSAPGSRSNSRRGGFGRNNNRDYRK 558


>gi|30020240|ref|NP_831871.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|30262130|ref|NP_844507.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47527402|ref|YP_018751.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47566879|ref|ZP_00237597.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|49184972|ref|YP_028224.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|49481521|ref|YP_036269.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|65319414|ref|ZP_00392373.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|118477548|ref|YP_894699.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|165870274|ref|ZP_02214930.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167632786|ref|ZP_02391112.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|167638259|ref|ZP_02396536.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170686363|ref|ZP_02877584.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|170706085|ref|ZP_02896547.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|177650849|ref|ZP_02933746.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190567856|ref|ZP_03020767.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|196036903|ref|ZP_03104288.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196046115|ref|ZP_03113343.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|206972062|ref|ZP_03233010.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|206975047|ref|ZP_03235961.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217959604|ref|YP_002338156.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|218231862|ref|YP_002366836.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|218903259|ref|YP_002451093.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|222095747|ref|YP_002529804.1| ATP-dependent RNA helicase (d-e-a-d box family) [Bacillus cereus
           Q1]
 gi|225864093|ref|YP_002749471.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227815071|ref|YP_002815080.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228914725|ref|ZP_04078334.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228927197|ref|ZP_04090260.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228933452|ref|ZP_04096305.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228945743|ref|ZP_04108090.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228956133|ref|ZP_04118019.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228985230|ref|ZP_04145395.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229043887|ref|ZP_04191583.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH676]
 gi|229069681|ref|ZP_04202967.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus F65185]
 gi|229079319|ref|ZP_04211863.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus Rock4-2]
 gi|229121683|ref|ZP_04250906.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus 95/8201]
 gi|229127547|ref|ZP_04256538.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-Cer4]
 gi|229138830|ref|ZP_04267411.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-ST26]
 gi|229144746|ref|ZP_04273145.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-ST24]
 gi|229150373|ref|ZP_04278590.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus m1550]
 gi|229178524|ref|ZP_04305889.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus 172560W]
 gi|229184351|ref|ZP_04311558.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus BGSC
           6E1]
 gi|229190238|ref|ZP_04317240.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus ATCC
           10876]
 gi|229196367|ref|ZP_04323115.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus m1293]
 gi|229600206|ref|YP_002866487.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254684699|ref|ZP_05148559.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254720956|ref|ZP_05182747.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. A1055]
 gi|254737143|ref|ZP_05194847.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254743671|ref|ZP_05201356.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Kruger B]
 gi|254751458|ref|ZP_05203495.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Vollum]
 gi|254758331|ref|ZP_05210358.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Australia 94]
 gi|296502724|ref|YP_003664424.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|301053653|ref|YP_003791864.1| ATP-dependent RNA helicase [Bacillus anthracis CI]
 gi|29895790|gb|AAP09072.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|30256756|gb|AAP25993.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47502550|gb|AAT31226.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|47556508|gb|EAL14841.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|49178899|gb|AAT54275.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|49333077|gb|AAT63723.1| ATP-dependent RNA helicase (D-E-A-D box family) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|118416773|gb|ABK85192.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis str. Al Hakam]
 gi|164714162|gb|EDR19683.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167513560|gb|EDR88929.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|167531598|gb|EDR94263.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170129087|gb|EDS97952.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|170669439|gb|EDT20181.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|172083310|gb|EDT68371.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190560911|gb|EDV14885.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|195990488|gb|EDX54471.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196023170|gb|EDX61849.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|206732985|gb|EDZ50159.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|206746468|gb|EDZ57861.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217065161|gb|ACJ79411.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|218159819|gb|ACK59811.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|218535161|gb|ACK87559.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|221239805|gb|ACM12515.1| ATP-dependent RNA helicase (D-E-A-D box family) [Bacillus cereus
           Q1]
 gi|225790511|gb|ACO30728.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227006946|gb|ACP16689.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228587221|gb|EEK45291.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus m1293]
 gi|228593222|gb|EEK51039.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus ATCC
           10876]
 gi|228599147|gb|EEK56760.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus BGSC
           6E1]
 gi|228604928|gb|EEK62384.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus 172560W]
 gi|228633070|gb|EEK89682.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus m1550]
 gi|228638707|gb|EEK95138.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-ST24]
 gi|228644746|gb|EEL00997.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-ST26]
 gi|228655893|gb|EEL11740.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-Cer4]
 gi|228661727|gb|EEL17344.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus 95/8201]
 gi|228703987|gb|EEL56429.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus Rock4-2]
 gi|228713421|gb|EEL65310.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus F65185]
 gi|228725418|gb|EEL76679.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH676]
 gi|228774525|gb|EEM22926.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228803570|gb|EEM50303.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228813964|gb|EEM60238.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228826181|gb|EEM71961.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228832523|gb|EEM78097.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228845044|gb|EEM90086.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229264614|gb|ACQ46251.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|296323776|gb|ADH06704.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|300375822|gb|ADK04726.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str.
           CI]
 gi|324326167|gb|ADY21427.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 389

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 99/348 (28%), Positives = 179/348 (51%), Gaps = 8/348 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P +  A   AG+ + T IQ + IP +L+  DV   + TGTGKT +++LP+L  +      
Sbjct: 7   PFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI---NPE 63

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           V+ P+ ++L PTREL  Q+ +  +K+     ++ A LIGG   + Q +KL++   V++ +
Sbjct: 64  VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLKKHPRVIVGS 123

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGRIL+     KL M+ ++ +V DE D+++    +  +Q++       RQ + FSATMT 
Sbjct: 124 PGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQLVFFSATMTK 183

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
             +  + +    P+ + V    S +         TY    ++                 +
Sbjct: 184 AAEDAARDLAVEPQLVRVTRAESKSLVE-----HTYIICERREKNDYVRRIMHMGDVKAV 238

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
            F N    +  +   L+ +     A+H    ++ R   +  F+ G +++++A+D+AARG+
Sbjct: 239 AFLNDPFRLDEITEKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGI 298

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           DI D+ HV + ++P+  + YIHR GRTGR G+ G   +LV  ++ + +
Sbjct: 299 DIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTPQEERKL 346


>gi|330470231|ref|YP_004407974.1| dead/deah box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
 gi|328813202|gb|AEB47374.1| dead/deah box helicase domain protein [Verrucosispora maris
           AB-18-032]
          Length = 563

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 134/394 (34%), Positives = 211/394 (53%), Gaps = 13/394 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG   + V A+  AG  +   IQ   +P+ L+  D+ G A TGTGKT  F +P+L 
Sbjct: 26  TFAELGARAETVEALAAAGITRAFAIQEYALPIALRGADLIGQAPTGTGKTLGFGVPLLE 85

Query: 62  ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +           P+ L++ PTREL  QVA +    G+   + V  + GG+ +E Q + L
Sbjct: 86  RVFAPGEGSGDGLPQALVVVPTRELGIQVAKDIAAAGRTRGVRVLPIYGGVAYEPQVEAL 145

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G ++L+ TPGR+LD   +  L +N I  LV+DEADRMLD+GF+  ++ I +++P  RQ
Sbjct: 146 RKGVEILVGTPGRLLDLAKQKHLRLNGIRALVLDEADRMLDLGFLDDVERILAMLPEDRQ 205

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+LFSATM D +  +S  FL++P  I     + T  + +   +        K  ++ ++L
Sbjct: 206 TMLFSATMPDPIVTLSRRFLRHPITIHAGHTAETGPSPQTEQLVYRTHSMNKVEIVARIL 265

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q++      I    ++     +   L+ +GF+V A+HG++ Q +R + L  F+ G I  +
Sbjct: 266 QAESRGLTMIFTRTKRA-ADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDTL 324

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV N+D P   + Y HRIGRTGRAG  G A T V  +D+     
Sbjct: 325 VATDVAARGIDVTGVTHVINYDCPEDQDTYTHRIGRTGRAGASGVAVTFVDWDDMPRWRI 384

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           I+K +             +  P E    + H + 
Sbjct: 385 IDKTLGL----------DMPEPQETYHTSPHLYT 408


>gi|326429375|gb|EGD74945.1| DEAD box polypeptide 47 isoform 1 [Salpingoeca sp. ATCC 50818]
          Length = 711

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 106/363 (29%), Positives = 171/363 (47%), Gaps = 4/363 (1%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
            +  +S K    +   GY    PIQ KT  L++  +D+ G A+TG GKT SF LP++  L
Sbjct: 119 DNFDISDKSRNNLEKHGYKYLFPIQAKTFDLIMAGNDIFGKARTGEGKTLSFALPVIEKL 178

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
                  R  R  +L              E      +L    + GG  +E Q +    G 
Sbjct: 179 LASPDTTRGRRPRVLVMAPTRELASQVWREFQKVGPSLASTCIYGGTDYEPQRRAFRNGL 238

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP----FTRQ 179
           DV++ TPGR++DH   G L + N++ LV+DEADRML++GF+  ++ + S+         Q
Sbjct: 239 DVVVGTPGRLMDHMESGALQLTNLQYLVLDEADRMLEVGFVDTVEKMLSMAVEQAGQKPQ 298

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSATM   ++     ++   K ++         +     +A    +  +  ++  ++
Sbjct: 299 MILFSATMPPFIKSTLTKYMPEHKVVDTVGKEMNRTSTGVQHLALRCPWQARNTVIADVV 358

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q         +   Q K   N     +     V  +HG+I Q+ R   L  F++G ++ +
Sbjct: 359 QVYSGAHGRTMIFTQTKRDANELALNDTLKQEVQVLHGDIAQKQRELSLQCFRDGKVRCL 418

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DIP+V  V   + P   E+YIHR GRTGRAGR G           + +  
Sbjct: 419 VATDVAARGIDIPEVDLVVQCEPPKDVESYIHRSGRTGRAGRKGTCICFYKPNQEQQLRE 478

Query: 360 IEK 362
           +E+
Sbjct: 479 VER 481


>gi|237843393|ref|XP_002370994.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211968658|gb|EEB03854.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|221481804|gb|EEE20174.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
 gi|221502304|gb|EEE28037.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 434

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 87/385 (22%), Positives = 156/385 (40%), Gaps = 12/385 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ DAG+  P+ +Q +TIP  +   DV   A++G GKTA FVL +L  
Sbjct: 46  FRDFFLKPELLRAIGDAGFEHPSEVQHETIPHAITGVDVLCQAKSGMGKTAVFVLSILQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN---------YNLTVALLIGGIPFE 113
           L    +        ++        ++A   +                +    +      +
Sbjct: 106 LNLDTSGEEGNTQGVVCLGIAHTRELAFQIKNEFDRFSKYLKNVKCEVVYGGISIQKNID 165

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
                      ++      +     +          ++ +    +  +     +QNI   
Sbjct: 166 MLKDAKTTPHILIGTPGRVLALIKGKHLNAEKVAHFVLDECDKCLEKLDMRKDVQNIFMA 225

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
            P  +Q + FSATM  E++ V + F+Q+P  + ++  S         +     +  K   
Sbjct: 226 TPKKKQVMFFSATMNKEIRDVCKRFMQSPVEVFIDDESKLTLHGLLQYYVKLQESEKNR- 284

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
                L         IIF         L   L +  F   AIH  +DQ  R+     FK 
Sbjct: 285 -KLNDLLDTLEFNQVIIFVKSVSRAQALDRLLTECNFPSIAIHAGLDQEERINRYQQFKN 343

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
              ++MVA+DL  RG+DI  V  V N+D+P+ +++Y+HR+GR GR G  G A T V +++
Sbjct: 344 FEKRIMVATDLFGRGIDIERVNIVINYDMPDSSDSYLHRVGRAGRFGTKGLAITFVASQD 403

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSS 377
           D   ++ ++   E  +  +   + +
Sbjct: 404 DTNVLNDVQTRFEVHIAEMPQSIDA 428


>gi|33416833|gb|AAH55481.1| Ddx10 protein [Mus musculus]
          Length = 623

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 123/446 (27%), Positives = 211/446 (47%), Gaps = 14/446 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P +  
Sbjct: 13  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 72

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +             LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +++  
Sbjct: 73  LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINN 132

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +            N+++LV+DEADR+LDMGF   +  I   +P  RQTL
Sbjct: 133 INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTL 192

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L++P+ + V+  +  +            +   +   +      
Sbjct: 193 LFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELH-QKISVLFSFLR 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA--IHGNIDQRSRMKILSNFKEGTIQLM 299
               K  I+F +  K V  L     +    +    +HG   Q  RM++ + F      ++
Sbjct: 252 SHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVL 311

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   + + +  
Sbjct: 312 FATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQGM-- 369

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +++L++KKV      ++    P + ID+      +  + + Q     +R ++ + S    
Sbjct: 370 VQQLLQKKVPVKEIKIN----PEKLIDV----QKKLESFLAQDQDLKERAQRCFVSYIRS 421

Query: 420 IPLKESEKISKLQQDIQENDADSLGF 445
           + L + +++  + +      A SLG 
Sbjct: 422 VYLMKDKEVFNVSKLPITEYALSLGL 447


>gi|27371129|gb|AAH23303.1| Ddx10 protein [Mus musculus]
          Length = 681

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 123/446 (27%), Positives = 211/446 (47%), Gaps = 14/446 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P +  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +             LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +++  
Sbjct: 131 LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINN 190

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +            N+++LV+DEADR+LDMGF   +  I   +P  RQTL
Sbjct: 191 INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTL 250

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L++P+ + V+  +  +            +   +   +      
Sbjct: 251 LFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELH-QKISVLFSFLR 309

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA--IHGNIDQRSRMKILSNFKEGTIQLM 299
               K  I+F +  K V  L     +    +    +HG   Q  RM++ + F      ++
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVL 369

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   + + +  
Sbjct: 370 FATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQGM-- 427

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +++L++KKV      ++    P + ID+      +  + + Q     +R ++ + S    
Sbjct: 428 VQQLLQKKVPVKEIKIN----PEKLIDV----QKKLESFLAQDQDLKERAQRCFVSYIRS 479

Query: 420 IPLKESEKISKLQQDIQENDADSLGF 445
           + L + +++  + +      A SLG 
Sbjct: 480 VYLMKDKEVFNVSKLPITEYALSLGL 505


>gi|29351650|gb|AAH49261.1| Ddx10 protein [Mus musculus]
          Length = 891

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 123/446 (27%), Positives = 211/446 (47%), Gaps = 14/446 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P +  
Sbjct: 87  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 146

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +             LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +++  
Sbjct: 147 LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINN 206

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +            N+++LV+DEADR+LDMGF   +  I   +P  RQTL
Sbjct: 207 INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTL 266

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L++P+ + V+  +  +            +   +   +      
Sbjct: 267 LFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELH-QKISVLFSFLR 325

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA--IHGNIDQRSRMKILSNFKEGTIQLM 299
               K  I+F +  K V  L     +    +    +HG   Q  RM++ + F      ++
Sbjct: 326 SHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVL 385

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   + + +  
Sbjct: 386 FATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQGM-- 443

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +++L++KKV      ++    P + ID+      +  + + Q     +R ++ + S    
Sbjct: 444 VQQLLQKKVPVKEIKIN----PEKLIDV----QKKLESFLAQDQDLKERAQRCFVSYIRS 495

Query: 420 IPLKESEKISKLQQDIQENDADSLGF 445
           + L + +++  + +      A SLG 
Sbjct: 496 VYLMKDKEVFNVSKLPITEYALSLGL 521


>gi|189491668|ref|NP_084212.2| probable ATP-dependent RNA helicase DDX10 [Mus musculus]
 gi|76364168|sp|Q80Y44|DDX10_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX10; AltName:
           Full=DEAD box protein 10
          Length = 875

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 123/446 (27%), Positives = 211/446 (47%), Gaps = 14/446 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P +  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +             LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +++  
Sbjct: 131 LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINN 190

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +            N+++LV+DEADR+LDMGF   +  I   +P  RQTL
Sbjct: 191 INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTL 250

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L++P+ + V+  +  +            +   +   +      
Sbjct: 251 LFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELH-QKISVLFSFLR 309

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA--IHGNIDQRSRMKILSNFKEGTIQLM 299
               K  I+F +  K V  L     +    +    +HG   Q  RM++ + F      ++
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVL 369

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   + + +  
Sbjct: 370 FATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQGM-- 427

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +++L++KKV      ++    P + ID+      +  + + Q     +R ++ + S    
Sbjct: 428 VQQLLQKKVPVKEIKIN----PEKLIDV----QKKLESFLAQDQDLKERAQRCFVSYIRS 479

Query: 420 IPLKESEKISKLQQDIQENDADSLGF 445
           + L + +++  + +      A SLG 
Sbjct: 480 VYLMKDKEVFNVSKLPITEYALSLGL 505


>gi|326471484|gb|EGD95493.1| DEAD box helicase [Trichophyton tonsurans CBS 112818]
          Length = 594

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 103/405 (25%), Positives = 159/405 (39%), Gaps = 26/405 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL P ++  +   GY+ PTP+Q   IP VL  HD+  +AQTG+GKTA+F++P+L+
Sbjct: 128 SFEDAGLHPIMLNNIKLCGYIVPTPVQAYCIPAVLTGHDLIAVAQTGSGKTAAFLIPVLS 187

Query: 62  ILEKGRARVRMPRTL-------------------ILEPTRELAAQVADNFEKYGKNYNLT 102
            L     ++  PR                     I+ PTRELA Q+ D   +      L 
Sbjct: 188 RLMGKAKKLAAPRPDLGNGFNESLDAVRAEPLVLIVVPTRELATQIFDEARRLCYRSMLR 247

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
             ++ GG P   Q  +L++G D+LI TPGR++D   +  +L        I +    L   
Sbjct: 248 PCVIYGGGPSRDQRIELQKGCDILIATPGRLIDFMEKPNILSLCRVRYTIIDEADELLKS 307

Query: 163 FIPYIQNIT---SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
                         V           + T                           T  +
Sbjct: 308 DWEVEFTKILAGGDVNEDADHRYMMFSATFNKGCRQVARKFLANDYVRIRIGRVGSTHLN 367

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                              L         I+F N K     +   L   G    +IH + 
Sbjct: 368 VTQQLVWAEENMKKKCLYDLLMAMPPSRTIVFVNNKTQADLIDDFLFNMGLPSTSIHSDR 427

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNR----AENYIHRIGR 335
            QR R   +  FK     +++A+ ++ARGLDI +V HV N+D+P+      + YIHRIGR
Sbjct: 428 TQREREDAIRAFKTAKSPILIATAVSARGLDIKNVMHVVNYDLPSANHGGIDEYIHRIGR 487

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNP 380
           T R G  G A +    ++      + K++ +    +   L +  P
Sbjct: 488 TARIGNPGLATSFYNDKNSDIASDLVKILVESKQVIPDFLQNEVP 532


>gi|26342749|dbj|BAC35031.1| unnamed protein product [Mus musculus]
          Length = 681

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 123/446 (27%), Positives = 211/446 (47%), Gaps = 14/446 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P +  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +             LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +++  
Sbjct: 131 LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINN 190

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +            N+++LV+DEADR+LDMGF   +  I   +P  RQTL
Sbjct: 191 INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTL 250

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L++P+ + V+  +  +            +   +   +      
Sbjct: 251 LFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELH-QKISVLFSFLR 309

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA--IHGNIDQRSRMKILSNFKEGTIQLM 299
               K  I+F +  K V  L     +    +    +HG   Q  RM++ + F      ++
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISTLALHGRQQQMRRMEVYNEFVRKRAAVL 369

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   + + +  
Sbjct: 370 FATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQGM-- 427

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +++L++KKV      ++    P + ID+      +  + + Q     +R ++ + S    
Sbjct: 428 VQQLLQKKVPVKEIKIN----PEKLIDV----QKKLESFLAQDQDLKERAQRCFVSYIRS 479

Query: 420 IPLKESEKISKLQQDIQENDADSLGF 445
           + L + +++  + +      A SLG 
Sbjct: 480 VYLMKDKEVFNVSKLPITEYALSLGL 505


>gi|325972264|ref|YP_004248455.1| DEAD/DEAH box helicase [Spirochaeta sp. Buddy]
 gi|324027502|gb|ADY14261.1| DEAD/DEAH box helicase domain protein [Spirochaeta sp. Buddy]
          Length = 378

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 123/363 (33%), Positives = 198/363 (54%), Gaps = 5/363 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LG+S  +   +       P PIQ + IP VL + DV GIA+TG+GKT S+VLP+L
Sbjct: 1   MPFTSLGISESLCAVLQRENITTPYPIQTEVIPAVLSKRDVLGIAKTGSGKTLSYVLPIL 60

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF-EAQNKK 118
             ++K    + R  + L++ PTRELAAQV   F +Y     L +  L             
Sbjct: 61  MNIQKKVVLKSRHIQVLVMVPTRELAAQVHSVFSQYIHESGLRIKTLAAFGGVSINPQMM 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 +L+ TPGR+L+  +   + ++++E++V+DEAD+ML +GF   +  + +L+P  R
Sbjct: 121 AMNNVSILVATPGRLLELVSLHAVNLSSVEMVVLDEADKMLTVGFEKEMDQVFALLPEKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT+ D++Q + +  L +P  I++   S   + I     + Y    ++   L + 
Sbjct: 181 QNLLFSATLNDQIQSLEKVLLHDPLVIKIEEESDALDYI---HQSAYFIPEEQKGPLLRY 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L     M+  ++F +       +   L+K G    +IH    Q +R ++L +FK G +++
Sbjct: 238 LIKSQDMQQVLVFTSSVARADRVVEKLQKNGIEARSIHSKKTQGARTELLRDFKLGYLRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V +DL +RG+DI  +  V N+++P    N+IHRIGRTGRA R G+A TLV+  +  H  
Sbjct: 298 LVTTDLLSRGIDIEFLPFVINYELPRSPINFIHRIGRTGRAERFGEAITLVSPSEEAHFK 357

Query: 359 AIE 361
            IE
Sbjct: 358 VIE 360


>gi|241954424|ref|XP_002419933.1| ATP-dependent RNA helicase, putative; atp-dependent rna helicase
           dbp4 (ec 3.6.1.-) (dead box protein 4 (helicase ca4)
           (helicase uf1) [Candida dubliniensis CD36]
 gi|223643274|emb|CAX42148.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 765

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 118/455 (25%), Positives = 213/455 (46%), Gaps = 25/455 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F+DL ++   +  + +A +V  T IQ KTIP+ L+  D+ G A+TG+GKT +F++P + 
Sbjct: 49  QFSDLPITENTLKGLKEATFVSLTDIQKKTIPVALKGEDLMGTARTGSGKTLAFLIPVIE 108

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +++            LI+ PTRELA Q+ +   K GK  + +  L+ GG   + + +++ 
Sbjct: 109 SLIRNKITEYDGLAALIVSPTRELAVQIFEVLTKIGKYNSFSAGLVTGGKDVQFEKERVS 168

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++               +  +N+++LV+DEADR LDMGF   I NI   +P TRQT
Sbjct: 169 RMNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPTTRQT 228

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT ++ +  ++   L NP +I V++    + T E            +   +     
Sbjct: 229 LLFSATQSESVNDLARLSLTNPNKIGVSSDQEVSATPESLEQYYVKVPLDEKLDVLWSFI 288

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI--HGNIDQRSRMKILSNFKEGTIQL 298
                   ++F +  K V     +       +  +  +G   Q SR++    F +     
Sbjct: 289 KSHLKSKILVFFSSSKQVQYTYETFRTLQPGISLMKLYGRHKQTSRLETTMKFSQAQHAC 348

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+ ARGLD P +  V   D P  A  Y+HR+GR+ R GR GK+  ++   + + + 
Sbjct: 349 LFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGRSARFGRKGKSLLMLLPSEEEGM- 407

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +++L   K+  +   L ++              ++K+     +S  F         Q++
Sbjct: 408 -LKRL---KIHKIEPKLMNI-----------KQKSKKSIRPQLQSLCFKDPVMKNLGQRA 452

Query: 419 HIP------LKESEKISKLQQDIQENDADSLGFRG 447
            I       +++ + + K+++   E+ A SLG  G
Sbjct: 453 FIAYFKSVHIQKDKDVFKVEELPAESYAASLGLPG 487


>gi|19113831|ref|NP_592919.1| ATP-dependent RNA helicase Dbp10 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|1175401|sp|Q09719|DBP10_SCHPO RecName: Full=ATP-dependent RNA helicase dbp10
 gi|914885|emb|CAA90465.1| ATP-dependent RNA helicase Dbp10 (predicted) [Schizosaccharomyces
           pombe]
          Length = 848

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 148/502 (29%), Positives = 242/502 (48%), Gaps = 60/502 (11%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  +GL+  ++ A+   G+  PTPIQ KTIPL+L+  DV G+A+TG+GKTA+FV+PM+ 
Sbjct: 70  NFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIE 129

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+   A     R LIL P RELA Q     + + K  +L    ++GG+  E Q   L  
Sbjct: 130 HLKSTLANSNT-RALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSG 188

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+++ TPGR L      KL +++IE +V DEADR+ +MGF   +  I   +P +RQTL
Sbjct: 189 KPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTL 248

Query: 182 LFSATMTDELQKVSENFLQ----------------------------------NPKRIEV 207
           LFSAT+   L   ++  LQ                                     +  +
Sbjct: 249 LFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAEREAALLCILQDII 308

Query: 208 NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
             P                +  K+   L        +  + ++F   K +V  +   L +
Sbjct: 309 KLPLKDNVRPREIGNVNNPKKRKRALELALKGSESGSPDSTLVFVPTKHHVEYVSELLVQ 368

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            G+SV  I+G++DQ +R+  ++NF+ G   L+V +D+A+RG+DIP + +V N+D P + +
Sbjct: 369 AGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPK 428

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV----DWLNGD--------- 374
            ++HR+GRT RAGR G A++LV  ED  ++  ++  + + +      +  D         
Sbjct: 429 VFVHRVGRTARAGRTGWAYSLVRAEDAGYLLDLQLFLNRPLVTSSKQVKTDSDCDFTKQI 488

Query: 375 -LSSLNPPL--EKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKL 431
            L SL   L  E ++  Q   +R +  + Q S    R +K Y   ++    + +++  +L
Sbjct: 489 VLGSLPQELVAELLEWVQRIVSR-DVELQQLSNVAARGEKLYFRTRATCSAESAKRAKEL 547

Query: 432 QQDIQENDADSLGFRGNMPAFM 453
                    DS G+  N P F 
Sbjct: 548 --------VDSKGWSSNNPLFG 561


>gi|327351047|gb|EGE79904.1| ATP-dependent RNA helicase DBP8 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 553

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 125/390 (32%), Positives = 189/390 (48%), Gaps = 18/390 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL+P +V ++      +PT IQ   IP +++  D  G ++TG+GKT +F  P+L 
Sbjct: 122 SFASLGLAPWLVGSLSVMAIKRPTAIQKACIPEIIKGRDCIGGSRTGSGKTVAFAAPILQ 181

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +    V      IL PTRELA Q+ +  +      +L   L+ GG     Q   L +
Sbjct: 182 KWAEDPFGVFAV---ILTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIALSQ 238

Query: 122 GADVLICTPGRILDHFN----RGKLLMNNIEILVIDEADRMLDMG---FIPYIQNITSLV 174
              ++I TPGR+ DH           +N   ++V+DEADR+L  G    +P ++   S +
Sbjct: 239 RPHIVIATPGRLADHITSSGADTICGLNRTRVVVLDEADRLLASGPGSMLPDVETCLSAL 298

Query: 175 PFTRQTLL--FSATMTDEL-----QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           P +       F+AT+T E+          N              +T              
Sbjct: 299 PPSTSRQTLLFTATVTPEVRALKSMPRPANKPPIFVTEISTENQATIPPTLKQTYLQVPL 358

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             ++  L   L    +  K  IIFCN+ K    L   L + G  V ++H  + Q  R   
Sbjct: 359 THREAFLHTLLSTEANAPKPSIIFCNRTKTADLLERMLRRLGHRVTSLHSLLPQSERTAN 418

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           LS F+    +++VA+D+AARGLDIP V  V NFDVP   ++Y+HR+GRT RAGR G+A T
Sbjct: 419 LSRFRASAARILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGREGEAVT 478

Query: 348 LVAKEDIKHIDAIEKLIEKK-VDWLNGDLS 376
           LV + D++ + AIE  + KK ++W    +S
Sbjct: 479 LVGQRDVQLVLAIEDRVGKKMIEWKEEGVS 508


>gi|261201117|ref|XP_002626959.1| ATP-dependent RNA helicase DBP8 [Ajellomyces dermatitidis SLH14081]
 gi|239594031|gb|EEQ76612.1| ATP-dependent RNA helicase DBP8 [Ajellomyces dermatitidis SLH14081]
 gi|239607095|gb|EEQ84082.1| ATP-dependent RNA helicase DBP8 [Ajellomyces dermatitidis ER-3]
          Length = 553

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 125/390 (32%), Positives = 189/390 (48%), Gaps = 18/390 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL+P +V ++      +PT IQ   IP +++  D  G ++TG+GKT +F  P+L 
Sbjct: 122 SFASLGLAPWLVGSLSVMAIKRPTAIQKACIPEIIKGRDCIGGSRTGSGKTVAFAAPILQ 181

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +    V      IL PTRELA Q+ +  +      +L   L+ GG     Q   L +
Sbjct: 182 KWAEDPFGVFAV---ILTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIALSQ 238

Query: 122 GADVLICTPGRILDHFN----RGKLLMNNIEILVIDEADRMLDMG---FIPYIQNITSLV 174
              ++I TPGR+ DH           +N   ++V+DEADR+L  G    +P ++   S +
Sbjct: 239 RPHIVIATPGRLADHITSSGADTICGLNRTRVVVLDEADRLLASGPGSMLPDVETCLSAL 298

Query: 175 PFTRQTLL--FSATMTDEL-----QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           P +       F+AT+T E+          N              +T              
Sbjct: 299 PPSTSRQTLLFTATVTPEVRALKSMPRPANKPPIFVTEISTENQATIPPTLKQTYLQVPL 358

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             ++  L   L    +  K  IIFCN+ K    L   L + G  V ++H  + Q  R   
Sbjct: 359 THREAFLHTLLSTEANAPKPSIIFCNRTKTADLLERMLRRLGHRVTSLHSLLPQSERTAN 418

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           LS F+    +++VA+D+AARGLDIP V  V NFDVP   ++Y+HR+GRT RAGR G+A T
Sbjct: 419 LSRFRASAARILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGREGEAVT 478

Query: 348 LVAKEDIKHIDAIEKLIEKK-VDWLNGDLS 376
           LV + D++ + AIE  + KK ++W    +S
Sbjct: 479 LVGQRDVQLVLAIEDRVGKKMIEWKEEGVS 508


>gi|163790997|ref|ZP_02185419.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
 gi|159873736|gb|EDP67818.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
          Length = 449

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 120/362 (33%), Positives = 177/362 (48%), Gaps = 3/362 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL P ++ A+ + G+ +PT +Q K IP +     V G +QTG+GKT +F+LP++ 
Sbjct: 4   TFEKFGLQPFLIDAITEIGFTQPTEVQQKLIPAIQNGKSVIGQSQTGSGKTHTFLLPLVN 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  R  V++  T       E   Q A    +      +    + G        K    
Sbjct: 64  KIDPSRKEVQVVITTPSRELAEQIYQAALQLVEKAPTKIIVQNFVGGTDKKRQMTKLSGT 123

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGRILD      LL++   +LVIDEAD  LDMGF+  +  I S +P   Q L
Sbjct: 124 QPHIVIGTPGRILDLVTEKSLLIHTSPVLVIDEADMTLDMGFLTDVDQIASKLPEKLQML 183

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+  +LQ   + ++ NP   ++   +  + TI        +   K    +   L +
Sbjct: 184 VFSATIPIKLQPFLKKYMSNPLFEQIQPKAIISPTI---DNWLISTKGKDRIDVIYELLT 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  +IF N K  V  L   L+ +G  V  IHG+I  R R +++   +    Q +VA
Sbjct: 241 IGQPYLVMIFANTKSKVDELADGLKSRGLKVAKIHGDIPPRERKRVMKQVQNLEYQFVVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+DI  V HV N ++P     +IHR+GRTGR    G A TL A  D   I  IE
Sbjct: 301 TDLAARGIDIEGVSHVINAEIPRDLSFFIHRVGRTGRNNLKGTAITLYAPSDENLIIDIE 360

Query: 362 KL 363
           KL
Sbjct: 361 KL 362


>gi|296412374|ref|XP_002835899.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629696|emb|CAZ80056.1| unnamed protein product [Tuber melanosporum]
          Length = 547

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 132/381 (34%), Positives = 205/381 (53%), Gaps = 3/381 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF + G    V+  V   G+  PT IQ +  P+ L   DV GIA+TG+GKT ++ LP +
Sbjct: 126 VDFDEAGFPSYVMNEVKAQGFAAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAI 185

Query: 61  TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             +      A    P  L+L PTRELA Q+     K+GK+  +    + GG+P   Q + 
Sbjct: 186 VHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEVAKFGKSSRIRNTCVYGGVPKGPQVRD 245

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG +VLI TPGR++D     K  +  +  LV+DEADRMLDMGF P I+ I   +   R
Sbjct: 246 LSRGVEVLIATPGRLIDMLETNKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQIRPDR 305

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ- 237
           QT ++SAT   E+++++ +FL +  ++ + +   +A       V     Y K+  L++  
Sbjct: 306 QTCMWSATWPKEVRQLASDFLNDFIQVNIGSLELSANHNIQQIVEVINDYDKRDRLIKHL 365

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                D     +IF   K+   ++   L + G+   AIHG+  Q  R  +L+ FK G   
Sbjct: 366 EKVMDDKNSKCLIFTGTKRTADDITRFLRQDGWPCLAIHGDKQQTERDWVLNEFKTGKSP 425

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MVA+D+A+RG+D+ ++ HV NFD PN +E+Y+HRIGRTGR G  G A T     D K  
Sbjct: 426 IMVATDVASRGIDVRNITHVINFDYPNNSEDYVHRIGRTGRGGARGTAITFFTTNDAKQA 485

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
             +  ++ +    +  +L+ +
Sbjct: 486 RDLLTVLREAKQQIPPELADM 506


>gi|327307374|ref|XP_003238378.1| ATP-dependent RNA helicase DBP8 [Trichophyton rubrum CBS 118892]
 gi|326458634|gb|EGD84087.1| ATP-dependent RNA helicase DBP8 [Trichophyton rubrum CBS 118892]
          Length = 528

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 127/432 (29%), Positives = 209/432 (48%), Gaps = 19/432 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ LGL+  +V ++      +PT IQ   IP +++  D  G ++TG+GKT +F  P+L 
Sbjct: 100 SFSSLGLASWLVSSLKAMEIKRPTAIQKSCIPEIMKGRDCIGGSRTGSGKTVAFAAPILH 159

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +    V      IL PTRELA Q+ +  +      +L   L+ GG     Q   L +
Sbjct: 160 KWSEDPFGVYAV---ILTPTRELALQIFEQVKAISAPQSLKPLLITGGSDMRPQAIGLSQ 216

Query: 122 GADVLICTPGRILDHFN----RGKLLMNNIEILVIDEADRMLDMG---FIPYIQNITSLV 174
              ++I TPGR+ DH         + +  + ++V+DEADR+L  G    +P ++   S +
Sbjct: 217 RPHIVIATPGRLADHIKSSGEDTIIGLKRVRMVVLDEADRLLTSGPGSMLPDVETCLSAL 276

Query: 175 PFTRQTLL--FSATMTDELQ----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
           P +       F+AT+T E++                 E++T ++T               
Sbjct: 277 PPSSDRQTLLFTATVTPEVRALKSMPRAKNKLPIFVSEISTENTTIPPTLKQTYLQVPLN 336

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            ++  L   L    ++ K+ IIFCN+ K    L   L +    V ++H  + Q  R+  L
Sbjct: 337 HREAFLHVLLSTGGNSSKSTIIFCNRTKTADLLERILRRLSHRVTSLHSLLPQSERVANL 396

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           S F+    +L+VA+D+AARGLDIP VG V N+DVP   ++YIHR+GRT RAGR G+A TL
Sbjct: 397 SRFRASAARLLVATDVAARGLDIPSVGLVINYDVPRNPDDYIHRVGRTARAGREGEAITL 456

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD- 407
           V + D++ + AIE  + K++        ++   + K  + +   + K   + +   G D 
Sbjct: 457 VGQRDVQLVLAIEARVGKQMVAWEEPGVNIESRIVKGTVLKEVGSTKREAMGEIDEGRDV 516

Query: 408 --RRKKNYSSQK 417
             RR +     +
Sbjct: 517 LGRRVRKLKKVR 528


>gi|313226956|emb|CBY22101.1| unnamed protein product [Oikopleura dioica]
          Length = 664

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 129/408 (31%), Positives = 200/408 (49%), Gaps = 20/408 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61
           F D+ +   ++ A+   G   PTPIQ++ IP      D+ GI+ TG+GKT SF +P++  
Sbjct: 212 FRDMKIPACLISALKRKGINIPTPIQMQGIPAAFTGRDMIGISFTGSGKTLSFSIPLIMA 271

Query: 62  ----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN------YNLTVALLIGGIP 111
                +E    R   P +L++ P+RELA Q     E    +        L VA+ IGG  
Sbjct: 272 ALEQEIEMPFVRDEGPFSLVICPSRELAKQTGHELEYLADHLDAGGFSKLRVAVAIGGTA 331

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
            +     +++G  VL+ TPGR++D   +G + +   + LV+DEADRM+DMGF   ++ I 
Sbjct: 332 VKETMDVVKKGVHVLVGTPGRLMDMLQKGMIHLETCKQLVLDEADRMVDMGFEEDVRFIL 391

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
           S     RQTLL+SATM  +++     F ++     +      A                +
Sbjct: 392 SYFKSQRQTLLYSATMPMKIKD----FAKSALVDPLTVNVGRAGAASLNIRQDIEYVLDE 447

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             ++  L   Q T    +IF  +K+ V  +   L  +G    AIHG  DQ  RM+    F
Sbjct: 448 AKVVTVLQMLQKTSPPVLIFAERKRAVDKVHEYLLLKGVECAAIHGGKDQEDRMEACRQF 507

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G   ++VA+D+A++GLD P++ HV N+D+P   ENYIHRIGRTGR    G A T V  
Sbjct: 508 RGGEKDVLVATDIASKGLDFPEIEHVINYDMPEDIENYIHRIGRTGRGNHQGVATTFVNS 567

Query: 352 E--DIKHIDAIEKLI---EKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           +  +   +  +  LI    + V     D+    P  ++ D   H  +R
Sbjct: 568 KSCENSILLDLRGLILEANQTVPVFLQDIVPDAPEHQEGDTVDHFISR 615


>gi|304385240|ref|ZP_07367585.1| ATP-dependent RNA helicase DbpA [Pediococcus acidilactici DSM
           20284]
 gi|304328447|gb|EFL95668.1| ATP-dependent RNA helicase DbpA [Pediococcus acidilactici DSM
           20284]
          Length = 453

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 129/459 (28%), Positives = 217/459 (47%), Gaps = 27/459 (5%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F    L P ++ A+   G+VKPTP+Q + IPL+ +   V G +QTG+GKT +F+LP+
Sbjct: 1   MNEFQKFNLKPFLMQALDQIGFVKPTPVQERVIPLIAEGQSVVGQSQTGSGKTHAFLLPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQN 116
              ++  +  ++     I  P+RELA Q+ +  ++        + +              
Sbjct: 61  FNQIDPAKNAIQAV---ITTPSRELAYQIYEAAKQLAAASETPIEIGNYVGGTDKKRQIA 117

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K       ++I TPGR+LD      L    ++ LVIDEAD  LDMGF+  +  I + +P 
Sbjct: 118 KLEHHQPAIVIGTPGRVLDLLQARALNFRQVQYLVIDEADMTLDMGFLSAVDQIAASMPE 177

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q L+FSAT+  +L    + ++++P   E+   ++ + TI++  ++T +Q         
Sbjct: 178 NLQMLVFSATIPQQLNVFLQKYMKHPAIEEIPVATTISPTIKNILISTKSQDKNNLIYQL 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               +       ++F N K+    L + L+ QG  V  IHG I  R R +I+ +      
Sbjct: 238 L---TMGEPYLALVFTNTKERADELTNYLKSQGLPVAKIHGGIPPRERKRIMKDIHRLRY 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VA+DLAARG+DI  V  V N D+P   E +IHR+GRTGR G  G A TL    +   
Sbjct: 295 QYVVATDLAARGIDIEGVSLVINDDIPTDLEFFIHRVGRTGRNGLPGTAITLYMPNEEAE 354

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP---------IPQKSTGFD 407
           +  +EK+  K +     +   ++    +    +    +K +P           +   G+ 
Sbjct: 355 VAEVEKMGVKFIPQQLRNHELVDTYDRQRRQTRRLSQKKLDPTLVGLVKKKKKKVKPGYK 414

Query: 408 RRKKNYSSQKS--------HIPLKESEKISKLQQDIQEN 438
           RR K   S+K+        H  ++E++K    Q   +  
Sbjct: 415 RRIKKAISEKAIRDRRMEQHQAVREAKKAKMRQSRSKRR 453


>gi|327467234|gb|EGF12738.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK330]
          Length = 447

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 129/451 (28%), Positives = 203/451 (45%), Gaps = 12/451 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-- 118
            +L++    V+     I  P+RELAAQ+     +        + +       +   +   
Sbjct: 61  QMLDEEADSVQAV---ITAPSRELAAQIYQAARQLASFSEREIRVANYVGGTDKARQIGK 117

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTI---ENWLLSTKGRDKNAQIY 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLLGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             +EK+  K +  +  D        ++   A    +R+            ++KK     K
Sbjct: 355 RELEKMGIKFIPKMIKD-DEFQDTYDRDRRANREKSREKLDTEMLGLVKKKKKKIKPGYK 413

Query: 418 SHIPL--KESEKISKLQQDIQENDADSLGFR 446
             I     E  + +K  ++     A+    R
Sbjct: 414 KKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|322386910|ref|ZP_08060534.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           cristatus ATCC 51100]
 gi|321269192|gb|EFX52128.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           cristatus ATCC 51100]
          Length = 447

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 175/366 (47%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ T +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFNFKDYIQEALKDLNFVEATEVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-- 118
             L++    V+     I  P+RELA Q+     +        + +       +   +   
Sbjct: 61  QELDEEADSVQAV---ITAPSRELATQIYQAARQLASFSEQEIRVANYVGGTDKARQIGK 117

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++     V+DEAD  LDMGF+  +  I + +P  
Sbjct: 118 LESSQPHIVIGTPGRIYDLVESGDLAIHKAHTFVVDEADMTLDMGFLETVDRIAARLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVMEQIKTKTVIADTI---DNWLLSTKGRDKNAQIY 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 235 EISQILQPYLAMIFVNTKTRADELQVYLTAQGLKVAKIHGDIPPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EKL
Sbjct: 355 RELEKL 360


>gi|160900768|ref|YP_001566350.1| DEAD/DEAH box helicase domain-containing protein [Delftia
           acidovorans SPH-1]
 gi|160366352|gb|ABX37965.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
          Length = 707

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 128/419 (30%), Positives = 205/419 (48%), Gaps = 48/419 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHD-----VCGIAQTGTGKTASFVL 57
           F +LGL+ ++V AV D GY +PT +Q + IPL +   D     +   +QTG+GKTA+F+L
Sbjct: 90  FIELGLAEELVRAVADLGYTQPTAVQAQAIPLAMGSDDQAFIDLMVSSQTGSGKTAAFLL 149

Query: 58  PMLT---------------------------------------ILEKGRARVRMPRTLIL 78
           P+L                                               +  +P  LIL
Sbjct: 150 PVLHTLIQQKADEEAAIRAEYDRQCAEATASGQPTPKRNKRKDPTNPRNFKAAVPGALIL 209

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
            PTRELA QVA +  +  K+        + G           + A++++ TPGR+LD   
Sbjct: 210 CPTRELAQQVAHDAIELVKHCRGIRIANVVGGMPYQLQIAKLQNANLVVATPGRLLDLQR 269

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
             ++ ++ ++ LV+DEADRMLD+GF   +  +  L    +QT++FSAT    +Q+++   
Sbjct: 270 SMQIKLDQVQFLVVDEADRMLDLGFSDDLAEVNDLTAQRKQTMMFSATFAPRIQQLAMRV 329

Query: 199 LQN--PKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
           + +      +V   +   +      V  +A  S+    L        T+   I+F + + 
Sbjct: 330 MHDGGSGVKKVTIDTPQEKHASIKQVLFWADNSQHKRKLLDHWLRDTTINQAIVFASTQV 389

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
               L + L++ GFS  A+HG + Q  R + L   + G +Q++VA+D+AARG+D+P + H
Sbjct: 390 ECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRSGQVQVLVATDVAARGIDVPTITH 449

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNG 373
           VFN+ +P +AE+Y HRIGRTGRAGR G A T     D + I  IE    +  K + + G
Sbjct: 450 VFNYGLPMKAEDYTHRIGRTGRAGREGVAVTFAEFRDRRRIFDIEAYSRQQFKAEVIPG 508


>gi|325695201|gb|EGD37102.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK150]
          Length = 447

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 126/407 (30%), Positives = 189/407 (46%), Gaps = 20/407 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-- 118
            IL++    V+     I  P+RELAAQ+     +        + +       +   +   
Sbjct: 61  QILDEEADSVQAV---ITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKTRQIGK 117

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTI---ENWLLSTKGRDKNAQIY 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTTQGLKVTKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
             +EK +  K            P + K D  Q  + R      +KS 
Sbjct: 355 RELEK-MGIK----------FTPKMIKDDEFQDTYDRDRRANREKSR 390


>gi|295425856|ref|ZP_06818536.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064459|gb|EFG55387.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           amylolyticus DSM 11664]
          Length = 456

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 127/437 (29%), Positives = 207/437 (47%), Gaps = 11/437 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  + P++   +    + KPT +Q + IP +L R +V   + TG+GKT ++++P+  
Sbjct: 7   TFTDSRIKPELQAGLEKIHFTKPTKVQERVIPTMLSRQNVIVQSATGSGKTHAYLVPVFN 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+   T       +   QVA +  K        + L  G        K   +
Sbjct: 67  DIDLSSDYVQAIITAPSRELADQLYQVAKSLRKASGLNISIMHLAGGTDRERQLEKIENK 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++I TPGR+LD   +    ++ ++  +IDEAD  LDMGF+  I  + + +P      
Sbjct: 127 KPQLVIATPGRLLDFVQKKIFAVDAVKDFIIDEADMTLDMGFLNDIDQVAAKLPKDVLFA 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT+  +L      ++ +P  I ++ P+  A TI++  +   ++  K          +
Sbjct: 187 AFSATIPVKLANFLRKYMAHPDEIIIDNPAIIAPTIKNDLLDVGSKDKKNVLYQLL---T 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F N K+ V  L   L+ QG  V  IHG I +R R + L   ++G  Q +VA
Sbjct: 244 MGQPYLALVFANTKQKVDELTKFLQDQGLKVAKIHGGITERERKRTLRQVEQGQFQYVVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           SDLAARGLDI  V  V N++VP   E  IHRIGRTGR G  G A TL+ +E++  I+ +E
Sbjct: 304 SDLAARGLDIDGVSLVINYEVPRNLEFVIHRIGRTGRNGLPGHAVTLIREEEMNRIEELE 363

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF-----DRRKKNYSSQ 416
           K +    D++      L P   K    + N   KN  +  K  G+      +RK  Y  +
Sbjct: 364 K-MGVHFDFVEIKKGELVP--RKHYRRRDNREAKNRKLDTKLVGYVKKEKRKRKPGYKKK 420

Query: 417 KSHIPLKESEKISKLQQ 433
                 +++ +  KL+Q
Sbjct: 421 IKRAIQEDNRQKRKLEQ 437


>gi|294337058|emb|CAX65669.1| vasa-like protein [Isodiametra pulchra pulchra]
          Length = 574

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 120/371 (32%), Positives = 180/371 (48%), Gaps = 10/371 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  L+      V  +GY KPTPIQ   IP V Q  D+   AQTG+GKTA+F+LP++ 
Sbjct: 118 SFDEAQLTETFRRNVQRSGYNKPTPIQKYAIPAVRQGRDIMACAQTGSGKTAAFLLPVIA 177

Query: 62  ILEK------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            + +          V+ P  +I+ PTRELA Q+    +K      L   ++ GG+     
Sbjct: 178 GIMEENRPASEYDSVQEPSAVIIAPTRELAVQIDREAKKLIHGSILKSVVIYGGVSVAHH 237

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             ++ RG ++L+ TPGR+      GK+ +   + LV+DEADRML+ GF   ++   S++P
Sbjct: 238 ASQVARGCNILVATPGRLKGFIEMGKISLKKAKFLVLDEADRMLEEGFEAEVRRAASMMP 297

Query: 176 FTRQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
                    FSAT   E+Q ++   L                      +       K   
Sbjct: 298 PNTLRQTLLFSATFPTEVQDLARTLLNEDYLFITVGELGAGNADVTHLIFNVPHTEKIGK 357

Query: 234 LLQQL-LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           L +    +   + +  I+F   KK    L   L + G+   +IHG+ +QR R + L  FK
Sbjct: 358 LKELFSSRIDTSRQKSIVFVEMKKRCDFLAVQLCQAGYQSTSIHGDREQREREEALRQFK 417

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK- 351
            G   ++VA+ +AARGLDIP V  V NFD+P   E + HR GRTGR G  G A TL+   
Sbjct: 418 SGQCNILVATAVAARGLDIPKVMFVVNFDMPKTIEEFTHRCGRTGRVGFKGDAITLLDPT 477

Query: 352 EDIKHIDAIEK 362
            D + + ++ K
Sbjct: 478 NDYEIMRSLVK 488


>gi|323446209|gb|EGB02463.1| hypothetical protein AURANDRAFT_35236 [Aureococcus anophagefferens]
          Length = 365

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 107/337 (31%), Positives = 171/337 (50%), Gaps = 7/337 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ +P+P+Q + IP++LQ  +V   A+ GTGKTA+F++P   
Sbjct: 36  EFEDYFLKRELLMGIFEKGFERPSPVQERAIPIILQNRNVLARAKNGTGKTAAFIIP--- 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            LEK     +  + LIL PTRELA Q +    + GK+  +   +  GG   +    +L +
Sbjct: 93  CLEKTDPSKKFIQVLILIPTRELALQTSAVVRELGKHMKVECMVSTGGTSLKDDIMRLYK 152

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              VL+ TPGRILD   +G   +     +++DEAD++L   F P ++ +       RQ  
Sbjct: 153 PVHVLVGTPGRILDLSEKGVAALGRCHTVIMDEADKLLSPEFEPLLEKLVHHCSPERQIC 212

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++   E F+ NP  I          T++           ++       L +
Sbjct: 213 LFSATFPVTVKNFKEKFIHNPYEI----NLMDDLTLKGITQFYAFVEERQKVHCLHTLFT 268

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +  +   +IFCN    V  L   + + G+S   IH  + Q  R ++   F+ G+ + +V+
Sbjct: 269 KLEINQSVIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGSTRHLVS 328

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338
           SDL  RG+DI  V  V NFD P  +E Y+HRIGR GR
Sbjct: 329 SDLFTRGIDIQSVNVVINFDFPKTSETYLHRIGRAGR 365


>gi|257869404|ref|ZP_05649057.1| DEAD-box ATP dependent DNA helicase [Enterococcus gallinarum EG2]
 gi|257803568|gb|EEV32390.1| DEAD-box ATP dependent DNA helicase [Enterococcus gallinarum EG2]
          Length = 448

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 118/366 (32%), Positives = 186/366 (50%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F      P +  A+ +  +  PT +Q K IP++ +   V G +QTG+GKT +F+LP++
Sbjct: 1   MSFESFKFQPFIYEALAEKKFTSPTEVQEKLIPVIQKGRSVVGQSQTGSGKTHTFLLPLM 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNK 117
             ++  +  V++    I  P+RELA Q+    ++  +     + +             ++
Sbjct: 61  DQIDPQKDEVQVV---ITAPSRELATQIYQAAKQLAEFQQPEIRVTNFVGGTDKQRQMDR 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              +   ++I TPGRILD  N   L ++     VIDEAD  LDMGF+  +  I S +P  
Sbjct: 118 LQNQQPQLVIGTPGRILDMINEQALAVHTARAFVIDEADMTLDMGFLEEVDQIASRLPEK 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+ ++L+   + +L+NP   E+   +  +E+I        +   K    L  
Sbjct: 178 LQMLVFSATIPEKLRPFLKKYLENPLIEEIRPKAVISESI---ENWLISTKGKDKNQLVY 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L +       I+F N K  V  L   L+++G  V  IHG+I  R R +++   +    Q
Sbjct: 235 QLLTTGHPYLAIVFANTKSRVDELTDYLKEKGLKVAKIHGDITPRERKRVMRQVQNLEYQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N ++P   + +IHR+GRTGR    G A TL    D + I
Sbjct: 295 YVVATDLAARGIDIEGVSHVINAEIPADLDFFIHRVGRTGRNQLAGTAITLYDPSDEQAI 354

Query: 358 DAIEKL 363
            AIE L
Sbjct: 355 QAIEDL 360


>gi|330718297|ref|ZP_08312897.1| superfamily II DNA/RNA helicase [Leuconostoc fallax KCTC 3537]
          Length = 448

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 125/444 (28%), Positives = 217/444 (48%), Gaps = 20/444 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L P ++  +   G+ +PTP+Q+K IP +L+  DV G +QTG+GKT +F++P+  
Sbjct: 4   QFGQFNLKPDLISGLTAIGFTQPTPVQLKLIPDILKGRDVVGQSQTGSGKTHTFLIPIFN 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE- 120
            +      V+     I  P+RELA Q+    +   +  +  + +       +   +  + 
Sbjct: 64  RIVFDANEVQAV---ITTPSRELADQITRAAKALAEQLDEDIRIADYVGGTDKARQIKQL 120

Query: 121 --RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
             +   ++I TPGRI D  +   L ++++  LV+DEAD  LDMGF+  +  I S +P   
Sbjct: 121 GNQQPQIVIGTPGRIKDLVDSQALKLHHVRTLVVDEADMTLDMGFLNEVDAIASAMPDDL 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSATM ++L+   + ++ NP+   +   +  A+TI++  + T +            
Sbjct: 181 QTLVFSATMPEKLKPFLKKYMDNPRFEAIPVDTVIADTIDNWLIPTKSADKDDIIYKLL- 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +       +IF N K+    L  +L  +G  V  +HG+I  R R + +   +    Q 
Sbjct: 240 --TIGHPYLALIFTNTKERAKALTRNLRGRGLKVAEVHGDIAPRERRRTMKQVQNLEFQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+DLAARG+DI  V HV N D+P+  E ++HR+GRTGR    G A TL   ++   + 
Sbjct: 298 VVATDLAARGIDIEGVSHVINDDIPSELEFFVHRVGRTGRNNLSGLAITLYGPDEEDEVV 357

Query: 359 AIEKL-IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP---------IPQKSTGFDR 408
            +E L I+ K   + GD   ++    K    +    +K +P               G+ R
Sbjct: 358 ELENLGIQFKPKQIRGD-EIVDIKDRKARTQRVATTKKLDPTMVGMVKKKKKNVKPGYKR 416

Query: 409 RKKNYSSQKSHIPLKESEKISKLQ 432
           R KN   +K+ +  + +++  +  
Sbjct: 417 RIKNAIQRKNQMDRRIAQREERRA 440


>gi|227502907|ref|ZP_03932956.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49725]
 gi|227076329|gb|EEI14292.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49725]
          Length = 452

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 124/367 (33%), Positives = 190/367 (51%), Gaps = 3/367 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG++ ++   + D G  +   IQ  T+P+ L   D+ G A+TG GKT  F +P+L 
Sbjct: 10  TFAELGVAAEICDGLADRGIARTFAIQELTLPIALNGQDLIGQARTGMGKTFGFGVPLLD 69

Query: 62  ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +            PR LI+ PTRELA QV  + +    +  + +A + GG P+E Q K 
Sbjct: 70  RVFDDADIAPPDGTPRALIVVPTRELAQQVTADLQDAAAHLPVRLAAIYGGRPYEEQIKL 129

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RG DV+I TPGR+LD   RG L++ ++ I+V+DEAD MLD+GF+P I+ I   +    
Sbjct: 130 LQRGVDVVIGTPGRLLDLHERGDLVLRHVAIVVLDEADEMLDLGFLPSIEAILEALDGNA 189

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
              +  +               +          +   T E     T+  +      +   
Sbjct: 190 HQTMLFSATMPGAILNLSRQFMHKPVHIRAESEADEVTHETTRKVTFQAHRMDKVAVIAH 249

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +         IIF   K++   L   L ++GF V A+HG++ Q+SR K L  F+ G + +
Sbjct: 250 ILQAQGRGRSIIFTRTKRSAAQLADDLAERGFHVGAVHGDLGQKSREKSLQAFRSGEVDI 309

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ DV HV N+ VP+    +IHRIGRTGRAG  G A TLV  +++    
Sbjct: 310 LVATDIAARGIDVDDVTHVINYQVPDDPMTFIHRIGRTGRAGHTGTAVTLVGYDELAKWR 369

Query: 359 AIEKLIE 365
            I   + 
Sbjct: 370 VINDELG 376


>gi|160915042|ref|ZP_02077255.1| hypothetical protein EUBDOL_01050 [Eubacterium dolichum DSM 3991]
 gi|158432841|gb|EDP11130.1| hypothetical protein EUBDOL_01050 [Eubacterium dolichum DSM 3991]
          Length = 466

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 119/463 (25%), Positives = 194/463 (41%), Gaps = 29/463 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D          +   G+++PTPIQ + +PL  +  ++ GI+ TGTGKT +F++P+  
Sbjct: 15  KFSDYHFKEHTKAFLKLEGFIEPTPIQQEVLPLACKGKNIVGISDTGTGKTHAFLIPIFE 74

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADN--FEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   +  V+     I  PTRELA Q+       K          +  G        +  
Sbjct: 75  KINIDKQAVQAV---ITAPTRELALQIYQRSLTMKEACPKLAIRLITGGMEKTRMNEQLK 131

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   V+           +   L ++  +ILVIDEAD  L+ GF+  + NI   +    Q
Sbjct: 132 VQPHIVIGTPGRIKDLFLSEQTLRIDTADILVIDEADMTLEFGFLEDVDNIAGRMRKDLQ 191

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++FSAT+   L+   + ++  P  I++   S     IEH          K        L
Sbjct: 192 MMVFSATIPQGLKPFLKKYVGTPSIIQIEEKSQFHPKIEH---VLVPCQEKSYIDKMMEL 248

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    +IF N +        +L   G+ V  +HG +  R R K +          +
Sbjct: 249 LPSFKPYVCLIFANTRTEASEAAKALRDAGYGVIELHGGLTPRERTKAMRELVNIEKSYV 308

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+DI  + HV +   P   + YIHR GRTGRAG  G  + L  K+D   I +
Sbjct: 309 VATDIAARGIDIEGISHVISLGFPKELDYYIHRSGRTGRAGNDGICYALYKKQDDAMIRS 368

Query: 360 IE--------------KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           +E              K IE  +D L+      + PLEK +IA+    +K    P    G
Sbjct: 369 LEIKGIGFQHRSFKNGKWIE--LDALHKKKVKKDDPLEK-EIAKIVSKKKKQVKP----G 421

Query: 406 FDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGN 448
           +  ++K    +      ++  +    +Q  +   A  +  RG+
Sbjct: 422 YKVKRKAEVEKLKRKARRKMIQEDIQRQKKERAKAKQIEKRGD 464


>gi|302306975|ref|NP_983443.2| ACR040Wp [Ashbya gossypii ATCC 10895]
 gi|299788776|gb|AAS51267.2| ACR040Wp [Ashbya gossypii ATCC 10895]
          Length = 763

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 122/459 (26%), Positives = 207/459 (45%), Gaps = 28/459 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F DL +S   V  + +A Y+K T IQ   IP+ L+ HDV G A+TG+GKT +F++P +
Sbjct: 41  VTFQDLPISSGTVKGLKEAAYIKMTDIQRAAIPVALKGHDVLGAAKTGSGKTLAFLVPVL 100

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +  +    +     L++ PTRELA Q+ +   K GK  + +  L+IGG   + + +++
Sbjct: 101 EKLYHERWTELDGLGALVISPTRELAMQIYEVLVKIGKYMSFSAGLVIGGKDVKFEMERV 160

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   ++      +        L  +N++ILV+DEADR LDMGF   +  I S +P +RQ
Sbjct: 161 SKINILIGTPGRLLQHMDQSVGLNTSNLQILVLDEADRCLDMGFKKALDAIVSNLPPSRQ 220

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT +  L  ++   L + K +      S+                        +L
Sbjct: 221 TLLFSATQSQSLADLARLSLADYKTVGTMDGPSSKNKPATPENLEQFYIQVALPDKLDIL 280

Query: 240 QSQDTMK---NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL--SNFKEG 294
            S          I+F +  K V  +  +  K    +  +H +  Q+   +      F   
Sbjct: 281 FSFIKSHLKSKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQTARTETLDKFSRA 340

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
               + ++D+ ARG+D P V  V   D P   + YIHR GR+ R G+ GK+  ++  ++ 
Sbjct: 341 QHVCLFSTDVVARGIDFPSVDWVIQTDCPEDVDTYIHRAGRSARYGKTGKSLLMLTPQEE 400

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
                + +L  K ++              K++I Q    RK+     +S  F   +  Y 
Sbjct: 401 DAF--LARLKGKLIEP------------SKLNIKQ--SKRKSIKPQLQSLLFKDPELKYL 444

Query: 415 SQKSHIP------LKESEKISKLQQDIQENDADSLGFRG 447
           +QK+ I       +++  ++ K  +   E  A SLG  G
Sbjct: 445 AQKAFISYVRSIYIQKDTEVFKFNELPLEEFAASLGLPG 483


>gi|85857908|ref|YP_460110.1| superfamily II DNA/RNA helicase [Syntrophus aciditrophicus SB]
 gi|85720999|gb|ABC75942.1| superfamily II DNA and RNA helicases [Syntrophus aciditrophicus SB]
          Length = 525

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 123/371 (33%), Positives = 192/371 (51%), Gaps = 8/371 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L P +  A   AG+ K   +Q K IP +L R D+   ++TG+GKT +++LP+L  L+   
Sbjct: 45  LPPTIRDAATRAGWTKLMDVQAKAIPYILARRDLMIQSKTGSGKTGAYLLPILGRLDP-- 102

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
            R    + +IL PTRELA QV+        +  +  A+  GG+ + AQ +    GA ++I
Sbjct: 103 -RKAACQAMILVPTRELALQVSREALLLSADSGIRTAVAYGGVGYHAQLEAFREGAQLVI 161

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187
            TPGRILDH  R  L +  + ILV DEADRML MGF P ++ I   +P      L SAT 
Sbjct: 162 GTPGRILDHLIRSSLSLKALSILVFDEADRMLSMGFYPDMKRIQEFIPREINAYLLSATF 221

Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247
              + +++  FL+ P+ + ++         EH +        ++       +   +   +
Sbjct: 222 PSHVLRLAGEFLRKPELLSLSRDQIHVTETEHVYYLVPGMGKERS---LVRIIEAENPVS 278

Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307
            IIFCN K  V  +   L++ G+    +   + Q++R K+++  + G ++ +VA+D+AAR
Sbjct: 279 AIIFCNTKATVHFVSVVLKRFGYDADELSSELSQKAREKVMARIRSGLLRFLVATDVAAR 338

Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
           G+DIPD+ HV  ++ P   E YIHR GRTGR G  G A +LVA  +   +  I K     
Sbjct: 339 GIDIPDLSHVIQYEPPEDPEAYIHRAGRTGRKGASGVAISLVAGMEQFRLRDIAKSFSID 398

Query: 368 VDW--LNGDLS 376
           +    L  D  
Sbjct: 399 IQERSLPKDEE 409


>gi|261204964|ref|XP_002627219.1| eukaryotic initiation factor 4A [Ajellomyces dermatitidis SLH14081]
 gi|239592278|gb|EEQ74859.1| eukaryotic initiation factor 4A [Ajellomyces dermatitidis SLH14081]
 gi|239611568|gb|EEQ88555.1| eukaryotic initiation factor 4A [Ajellomyces dermatitidis ER-3]
 gi|327348420|gb|EGE77277.1| ATP-dependent RNA helicase eIF4A [Ajellomyces dermatitidis ATCC
           18188]
          Length = 398

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 128/377 (33%), Positives = 209/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L  +++  V   G+ +P+ IQ + I  V++  DV   AQ+GTGKTA+F +  L 
Sbjct: 26  SFDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++  + LIL PTRELA Q+       G   ++     IGGI      K L+ 
Sbjct: 86  KVDTN---LKACQALILAPTRELAQQIQKVVVAIGDFMSIECHACIGGISVREDMKALQE 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I  L+P + Q +
Sbjct: 143 GPQVVVGTPGRVHDMIERRVLKTDHLKMFVLDEADEMLSHGFTEQIYDIFQLLPQSTQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 203 LLSATMPQDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG+++Q+ R  I+  F+ G+ ++++A
Sbjct: 261 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQQQRDIIMKEFRSGSSRVLIA 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 321 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 381 QFYSTQIEEMPMNVADL 397


>gi|168213797|ref|ZP_02639422.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens CPE str. F4969]
 gi|170714741|gb|EDT26923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens CPE str. F4969]
          Length = 405

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 119/374 (31%), Positives = 204/374 (54%), Gaps = 8/374 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           MD F  LGLS +V+ +++  G  +PT IQ K IP +L   +V G A+TGTGKT +++LP+
Sbjct: 1   MDKFLKLGLSEEVLKSLVGLGIEEPTDIQEKAIPEILNGKNVIGKAETGTGKTLAYLLPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRE--LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +  ++  +  ++     IL PT E  +      N  K G    +T   L+G    + Q +
Sbjct: 61  IEKIDDSKNEMQAI---ILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQME 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+    +L+ T GRIL+  N+ K+  N I+ +VIDE D++LD   I  ++++    P  
Sbjct: 118 KLKNKPHILVGTTGRILELINKKKITTNTIKTIVIDEGDKLLDFINIKDVRSVVKSCPRD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSATM ++  + ++  +   + I+    +   E IEH +     +       L++
Sbjct: 178 TQKLIFSATMNEKALENADELIGISELIQAKAANKVNENIEHGYFQVELRDK--IDFLRK 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ +    K  I+F N   NV N+   L+       ++HG+ ++  R K L +F+ G  +
Sbjct: 236 LIHAIGDEKKIIVFINNSYNVHNVIQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAK 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ SD++ARGLDI    H+ N D+P  ++NY+HR+GR GRAG  G A++L   ++ K I
Sbjct: 296 VLITSDVSARGLDIKGATHIVNLDIPMNSQNYLHRVGRVGRAGEKGFAYSLADYKEEKII 355

Query: 358 DAIEKLIEKKVDWL 371
              E+ ++ K+  +
Sbjct: 356 VKCERQLKIKIPRV 369


>gi|556308|gb|AAA50407.1| protein synthesis initiation factor 4A [Mus musculus]
          Length = 406

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 202/378 (53%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 33  SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E     ++  + L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 93  QIEL---DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 149

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q 
Sbjct: 150 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 209

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L      
Sbjct: 210 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL--Y 267

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+VCA+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 268 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVCAMHGDMDQKERDVIMREFRSGSSRVLI 327

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V +ED + +  I
Sbjct: 328 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 387

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      ++ +  +++ L
Sbjct: 388 ETFYNTSIEEMPLNVADL 405


>gi|84494425|ref|ZP_00993544.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
 gi|84383918|gb|EAP99798.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
          Length = 774

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 122/376 (32%), Positives = 192/376 (51%), Gaps = 9/376 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+  ++V  +   G   P PIQ  TIP  L   DV G  QTG+GKT +F LP +T 
Sbjct: 325 FAKLGVDARLVERLARDGITSPFPIQEATIPDALAGRDVLGRGQTGSGKTLAFGLPTITR 384

Query: 63  LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L  G     + PR LI+ PTRELA QV+D  E       L   L+ GG+ +E Q + L+ 
Sbjct: 385 LVDGTRPAPKRPRALIMVPTRELAMQVSDALEPLVHVTGLRHKLVAGGLSYEPQVRALKS 444

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+L+ TPGR+ D   RG   +++++++++DEAD M DMGF+P +  I   +P   Q L
Sbjct: 445 GIDILVATPGRLNDLIERGACELDDVQVVILDEADHMADMGFMPEVTAIMDKIPAGGQRL 504

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   + K+ + +L +P         ++  T+ H  +       K+          
Sbjct: 505 LFSATLDKGIDKLVDRYLSDPVTHSTEDAQASVTTMSHHIMLIDPNNKKQLTAELA---- 560

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F   +     +   L ++G    AIHG + Q  R + L  F++G++ ++VA
Sbjct: 561 -ARDGRTVVFVRTQLGADRIARELREKGVLAAAIHGGLSQNLRNRALGAFRDGSLPVLVA 619

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ + D+G V   D P   ++Y+HR GRT RAG  G   T       + ++ + 
Sbjct: 620 TDVAARGIHVDDIGLVLQADPPADHKDYLHRAGRTARAGEKGTVVTFALPHQKRTMERLA 679

Query: 362 KLIE---KKVDWLNGD 374
           +        +  + GD
Sbjct: 680 EAAGLDVAPIRVIPGD 695


>gi|312212697|emb|CBX92780.1| similar to ATP-dependent RNA helicase dbp10 [Leptosphaeria
           maculans]
          Length = 894

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 128/401 (31%), Positives = 216/401 (53%), Gaps = 36/401 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ K +PL+LQ  DV G+A+TG+GKTA+FV+PM+  
Sbjct: 80  FQAMGLNALLLKAIAQKGFKIPTPIQRKAVPLMLQGDDVVGMARTGSGKTAAFVIPMIQK 139

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+V   R +I+ P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 140 LKAHSAKVGA-RGIIMSPSRELALQTLKVVKELGRGTDLRTILLVGGDSLEEQFSSMTTN 198

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++++ +V DEADR+ +MGF   +  I   +P  RQTLL
Sbjct: 199 PDIIIATPGRFLHLKVEMGLDLSSVKYIVFDEADRLFEMGFAAQLSEILHALPTNRQTLL 258

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA---------------- 226
           FSAT+   L + +   LQ PK I ++  S  +  ++  +    +                
Sbjct: 259 FSATLPKSLVEFARAGLQEPKLIRLDAESKISPDLKSAYFTIKSGDRDGALLHLLDNVIK 318

Query: 227 -------------------QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
                                +KK       ++     ++ IIF   K  V  L + L  
Sbjct: 319 VPVGETEAAKKARVDSEKATTNKKRKRSDGFVKDAPIAESTIIFAATKHRVEYLANLLRA 378

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            G++V  ++GN+DQ +R + + +F+ G  +++V +D+AARG+D+P + HV N+D P++ +
Sbjct: 379 TGYAVSYVYGNLDQTARKEQIQDFRTGLTRILVVTDVAARGVDMPHINHVINYDFPSQPK 438

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            ++HR+GRT RAGR G A++L    D+ ++  ++  + K++
Sbjct: 439 IFVHRVGRTARAGRKGWAYSLCRHVDLPYLIDLQLFLGKRL 479


>gi|307328239|ref|ZP_07607417.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306886073|gb|EFN17081.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 503

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 134/430 (31%), Positives = 212/430 (49%), Gaps = 10/430 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +  +++  +   G   P PIQ  T+P  L   D  G  +TG+GKT +F L +L  
Sbjct: 77  FADLDMPKQLLATLTAQGVSVPFPIQGATLPNTLAGRDALGRGRTGSGKTLAFGLALLAR 136

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y ++  L +A ++GG+P   Q   L  G
Sbjct: 137 TAGQRAEPRQPLALVLVPTRELAQQVTDALTPYARSVKLRLATVVGGMPIGRQANVLRGG 196

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D  +RG   +N + I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 197 AEVVVATPGRLKDLIDRGDCRLNQVAITVLDEADQMADMGFMPQVTALLDQVRPEGQRML 256

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++   +L +P    V+  +    T+EH  +  +          +   +  
Sbjct: 257 FSATLDRNVDRLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVHGADK-----HRTTTEIA 311

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F + K  V  L   L   G    A+HG   Q  R + L+ FK G + ++VA+
Sbjct: 312 AREGRVIMFLDTKHAVDRLTQDLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVAT 371

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           ++AARG+ + D+  V N D P   ++Y+HR GRT RAG  G   TLV     + +  +  
Sbjct: 372 NVAARGIHVDDLDLVVNIDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRDMTRL-- 429

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPL 422
           +    +      + S    L +I  AQ   A    P+   +   +RRK++ +S+    P 
Sbjct: 430 MTAAGIVPRTTQVRSGEEALGRITGAQ---APSGIPVTITAPVVERRKRSAASRGRRSPA 486

Query: 423 KESEKISKLQ 432
             + +++  Q
Sbjct: 487 SAARRMTARQ 496


>gi|157106028|ref|XP_001649134.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108879960|gb|EAT44185.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 548

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 112/507 (22%), Positives = 205/507 (40%), Gaps = 64/507 (12%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F  + L  +++  +   G++ PT IQ K IPL+L+  DV   A+TG+GKTA+F +P++
Sbjct: 10  LNFHQMELDDRILKGIAKLGWLCPTLIQEKAIPLLLEGKDVLVRARTGSGKTAAFSIPVI 69

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                 K  A+ +    +IL P+++L  Q+A   E         V  +      +    K
Sbjct: 70  QKILNYKQDAKEQQTTVVILAPSKDLCHQIAKVIEDLTIKCGRLVRCVDLSTKVDKVALK 129

Query: 119 LE---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
                R   V+      +         + ++++ LV+DEAD M   GF   ++ +    P
Sbjct: 130 HILAERPDIVVSTPAKLVSQLQEGNISVKDSLQTLVVDEADLMFTFGFENDLKTVLDYFP 189

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q++L SAT+  ++ ++ +  L NP  +++  P     +    +     +  K   L 
Sbjct: 190 SVHQSILASATLEKDVMELKKIILHNPVILKLEEPEMAPASQLAHYHILAEEVDKAAVLY 249

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                        IIF N       L   LE+     C ++  +  + R   ++ F +G 
Sbjct: 250 TLFKLQLVKG-KSIIFVNSIDRCYRLKLFLEQFSIRSCILNSELPAKIRCHTVNQFNQGL 308

Query: 296 IQLMVASDLAA-------------------------------RGLDIPDVGHVFNFDVPN 324
             +++ASD                                  RG+D   V +V NFD P 
Sbjct: 309 YDIIIASDELHVLDPSVNEKKGQKKKMIKQIAKQVESEAGVSRGIDFQFVSNVINFDFPK 368

Query: 325 RAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384
               YIHR GRT R    G   +LV+ E+ + +DA+E  +    +  +  L S +  +E+
Sbjct: 369 DVNAYIHRAGRTARGNNTGSVLSLVSIEEKEAMDAVEDHLRPGYEEGDQVLKSYHFKMEE 428

Query: 385 IDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESE--KISKLQQDIQENDADS 442
           ++           P   ++    R    +S +++ I   ++E     KL+   +EN  D 
Sbjct: 429 VE-----------PFRYRARDAWRAVTKFSIREARIKEIKTEMFNSEKLKSFFEENPRDL 477

Query: 443 LGFR--------------GNMPAFMLP 455
              R              G++P +++P
Sbjct: 478 QALRHDRTLHTVKVQEHLGDVPEYIVP 504


>gi|326481784|gb|EGE05794.1| ATP-dependent RNA helicase DED1 [Trichophyton equinum CBS 127.97]
          Length = 594

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 103/405 (25%), Positives = 159/405 (39%), Gaps = 26/405 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL P ++  +   GY+ PTP+Q   IP VL  HD+  +AQTG+GKTA+F++P+L+
Sbjct: 128 SFEDAGLHPIMLNNIKLCGYIVPTPVQAYCIPAVLTGHDLIAVAQTGSGKTAAFLIPVLS 187

Query: 62  ILEKGRARVRMPRTL-------------------ILEPTRELAAQVADNFEKYGKNYNLT 102
            L     ++  PR                     I+ PTRELA Q+ D   +      L 
Sbjct: 188 RLMGKAKKLAAPRPDLGNGFNESLDAVRAEPLVLIVVPTRELATQIFDEARRLCYRSMLR 247

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
             ++ GG P   Q  +L++G D+LI TPGR++D   +  +L        I +    L   
Sbjct: 248 PCVIYGGGPSRDQRIELQKGCDILIATPGRLIDFMEKPNILSLCRVRYTIIDEADELLKS 307

Query: 163 FIPYIQNIT---SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
                         V           + T                           T  +
Sbjct: 308 DWEVEFTKILAGGDVNEDADHRYMMFSATFNKGCRQVARKFLATDYVRIRIGRVGSTHLN 367

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                              L         I+F N K     +   L   G    +IH + 
Sbjct: 368 VTQQLVWAEENMKKKCLYDLLMAMPPSRTIVFVNNKTQADLIDDFLFNMGLPSTSIHSDR 427

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNR----AENYIHRIGR 335
            QR R   +  FK     +++A+ ++ARGLDI +V HV N+D+P+      + YIHRIGR
Sbjct: 428 TQREREDAIRAFKTAKSPILIATAVSARGLDIKNVMHVVNYDLPSANHGGIDEYIHRIGR 487

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNP 380
           T R G  G A +    ++      + K++ +    +   L +  P
Sbjct: 488 TARIGNPGLATSFYNDKNSDIASDLVKILVESKQVIPDFLQNEVP 532


>gi|307705236|ref|ZP_07642104.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
 gi|307621209|gb|EFO00278.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
          Length = 447

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 115/366 (31%), Positives = 180/366 (49%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   +  + V ++      +   +  +
Sbjct: 61  QQLDEASDSVQAV---ITAPSRELATQIYQAARQIAAHSEVEVRVVNYVGGTDKARQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +          
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 237 --TQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EKL
Sbjct: 355 RELEKL 360


>gi|229017434|ref|ZP_04174336.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH1273]
 gi|229023607|ref|ZP_04180100.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH1272]
 gi|228737643|gb|EEL88146.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH1272]
 gi|228743856|gb|EEL93956.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH1273]
          Length = 389

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 100/348 (28%), Positives = 179/348 (51%), Gaps = 8/348 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P +  A   AG+ + T IQ + IP +L+  DV   + TGTGKT +++LP+L  +      
Sbjct: 7   PFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI---NPE 63

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           V+ P+ +IL PTREL  Q+ +  +K+     ++ A LIGG   + Q +KL++   V++ +
Sbjct: 64  VKQPQVVILAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLKKHPKVIVGS 123

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGRIL+     KL M+ ++ +V DE D+++    +   Q++       RQ + FSATMT 
Sbjct: 124 PGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAAQDVIKSTMRDRQLVFFSATMTK 183

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
             +  + +    P+ + V    S +         TY    ++                 +
Sbjct: 184 AAEDAARDLAVEPQLVRVTRAESKSLVE-----HTYIICERREKNDYVRRIMHMGDVKAV 238

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
            F N    +  +   L+ +     A+H    ++ R   +  F+ G +++++A+D+AARG+
Sbjct: 239 AFLNDPFRLDEITQKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGI 298

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           DI D+ HV + ++P+  + YIHR GRTGR G+ G   +LV +++ + +
Sbjct: 299 DIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERKL 346


>gi|312867841|ref|ZP_07728046.1| putative DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           parasanguinis F0405]
 gi|311096596|gb|EFQ54835.1| putative DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           parasanguinis F0405]
          Length = 425

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 183/366 (50%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +    P +  A+ +  + + T +Q K IP+VL  +D+ G ++TG+GKT +F+LP+ 
Sbjct: 7   MKFTEFNFKPYIQEALKEINFREATEVQEKLIPIVLAGNDLVGESKTGSGKTHTFLLPIF 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-- 118
             L +   +V      I  P+RELA Q+     +   +    + ++      +   +   
Sbjct: 67  QTLNEDSQQVEAV---ITAPSRELATQIYQAARQIASHSEKEIRIVNYVGGTDKSRQIEK 123

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              +   ++I TPGRI D    G L ++     V+DEAD  LDMGF+  +  I S +P  
Sbjct: 124 LQVKQPHIVIGTPGRIYDLVASGDLAIHKAHTFVVDEADMTLDMGFLSTVDKIASRLPQQ 183

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  ++TI++  V+T  +   +      
Sbjct: 184 LQFLVFSATIPQKLQPFLKKYLSNPVMEQIKTKTVISDTIDNWLVSTKGRDKNEQIYQL- 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K    +L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 243 --TKTLQPYLAMIFVNTKTRADDLHAYLVAQGLKVAKIHGDIPPRERKRIMNQVKNLDFE 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 301 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGVAITLYQPSDDSDI 360

Query: 358 DAIEKL 363
             +EK+
Sbjct: 361 RELEKM 366


>gi|324508397|gb|ADY43545.1| ATP-dependent RNA helicase pitchoune [Ascaris suum]
          Length = 574

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 108/413 (26%), Positives = 195/413 (47%), Gaps = 14/413 (3%)

Query: 3   FADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           F  L   +S   + AV + G+ + T IQ K I  +L+  D+ G A+TG+GKT +F++P +
Sbjct: 93  FDSLSDVVSEATLAAVREMGFTQMTKIQAKCIRPLLEGRDILGAAKTGSGKTLAFLIPAV 152

Query: 61  TILEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVA--LLIGGIPFEAQNK 117
            +L K   +VR    +I + PTREL+ Q      +  + +       ++ G        K
Sbjct: 153 ELLVKLEWKVRNGTGVIVISPTRELSMQTYGVLSELLEKHPAITHGLVMGGANRQAEVQK 212

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            ++    ++      +    N    ++ N++ L++DEADR+LD+GF   +Q+I  ++P  
Sbjct: 213 LVKGVNFLVATPGRLLDHLQNTDDFVVRNLKCLIVDEADRILDIGFEIEMQHILRILPKK 272

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC-----FVATYAQYSKKC 232
           RQT+LFSAT T ++ ++ +  L +        P    +                  S+K 
Sbjct: 273 RQTMLFSATQTAKVNELIKAALHSDPLRIGIDPKDAPDEDGSATVSGLQQGYVVCPSEKR 332

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            LL      ++  K  ++F +   +V            SV  IHG   Q+ R     +F 
Sbjct: 333 LLLLFTFLKKNRNKKVMVFFSSCNSVKFHHELFNYIDISVQCIHGKQKQQKRTCTFFSFC 392

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAK 351
           +    ++  +D+AARGLDIP V  +  +D P+    YIHR+GRT R     G A  L+  
Sbjct: 393 QAKTGILFCTDVAARGLDIPQVDWIVQYDPPDEPREYIHRVGRTARGAEGTGHALLLLRP 452

Query: 352 EDIKHIDAIE--KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           E++  +  ++  +++  + ++    ++++ P LEK+ I Q+ +  K+     K
Sbjct: 453 EELGFLRYLKQARVVLNEFEFSWNKVANIQPQLEKL-IEQNYYLNKSAKEAYK 504


>gi|223590230|sp|A5DQS0|DED1_PICGU RecName: Full=ATP-dependent RNA helicase DED1
          Length = 637

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 135/393 (34%), Positives = 205/393 (52%), Gaps = 19/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L P +V  +  + + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+ 
Sbjct: 171 FTAPPLDPLIVENIKLSRFTKPTPVQKYSVPIVASGRDLMACAQTGSGKTGGFLFPVLSE 230

Query: 63  LEKGRA------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                                 P  L++ PTREL +Q+ +  +K+     +   ++ GG 
Sbjct: 231 SYMNGPDAVPESQGAFSSHKVHPTALVMAPTRELVSQIFEEAKKFSYRSWVRPCVVYGGA 290

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q + L+RG D+L+ TPGR+ D   RG++ ++NI+ LV+DEADRMLDMGF P I++I
Sbjct: 291 DIGTQIRNLDRGCDLLVATPGRLKDLLERGRVSLSNIKYLVLDEADRMLDMGFEPQIRHI 350

Query: 171 TSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                      RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I    +    
Sbjct: 351 VQECDMPGVESRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVLYVED 410

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              K   L              IIF   K+   NL   L  QGF   AIHG+  Q  R K
Sbjct: 411 DEKKSVLLDLLSANDNG---LTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREK 467

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L+ FK GT  ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G A 
Sbjct: 468 ALAAFKSGTAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRIGRTGRAGNVGIAT 527

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
               + +   +  + +L+ +    +   L  ++
Sbjct: 528 AFFNRNNRNVVKGMIELLSEANQEVPDFLQKIS 560


>gi|190348962|gb|EDK41523.2| hypothetical protein PGUG_05621 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 666

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 135/393 (34%), Positives = 205/393 (52%), Gaps = 19/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L P +V  +  + + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+ 
Sbjct: 200 FTAPPLDPLIVENIKLSRFTKPTPVQKYSVPIVASGRDLMACAQTGSGKTGGFLFPVLSE 259

Query: 63  LEKGRA------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                                 P  L++ PTREL +Q+ +  +K+     +   ++ GG 
Sbjct: 260 SYMNGPDAVPESQGAFSSHKVHPTALVMAPTRELVSQIFEEAKKFSYRSWVRPCVVYGGA 319

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q + L+RG D+L+ TPGR+ D   RG++ ++NI+ LV+DEADRMLDMGF P I++I
Sbjct: 320 DIGTQIRNLDRGCDLLVATPGRLKDLLERGRVSLSNIKYLVLDEADRMLDMGFEPQIRHI 379

Query: 171 TSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                      RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I    +    
Sbjct: 380 VQECDMPGVESRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVLYVED 439

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              K   L              IIF   K+   NL   L  QGF   AIHG+  Q  R K
Sbjct: 440 DEKKSVLLDLLSANDNG---LTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREK 496

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L+ FK GT  ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G A 
Sbjct: 497 ALAAFKSGTAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRIGRTGRAGNVGIAT 556

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
               + +   +  + +L+ +    +   L  ++
Sbjct: 557 AFFNRNNRNVVKGMIELLSEANQEVPDFLQKIS 589


>gi|146413260|ref|XP_001482601.1| hypothetical protein PGUG_05621 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 666

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 135/393 (34%), Positives = 205/393 (52%), Gaps = 19/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L P +V  +  + + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+ 
Sbjct: 200 FTAPPLDPLIVENIKLSRFTKPTPVQKYSVPIVASGRDLMACAQTGSGKTGGFLFPVLSE 259

Query: 63  LEKGRA------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                                 P  L++ PTREL +Q+ +  +K+     +   ++ GG 
Sbjct: 260 SYMNGPDAVPESQGAFSSHKVHPTALVMAPTRELVSQIFEEAKKFSYRSWVRPCVVYGGA 319

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q + L+RG D+L+ TPGR+ D   RG++ ++NI+ LV+DEADRMLDMGF P I++I
Sbjct: 320 DIGTQIRNLDRGCDLLVATPGRLKDLLERGRVSLSNIKYLVLDEADRMLDMGFEPQIRHI 379

Query: 171 TSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                      RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I    +    
Sbjct: 380 VQECDMPGVESRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVLYVED 439

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              K   L              IIF   K+   NL   L  QGF   AIHG+  Q  R K
Sbjct: 440 DEKKSVLLDLLSANDNG---LTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREK 496

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L+ FK GT  ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G A 
Sbjct: 497 ALAAFKSGTAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRIGRTGRAGNVGIAT 556

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
               + +   +  + +L+ +    +   L  ++
Sbjct: 557 AFFNRNNRNVVKGMIELLSEANQEVPDFLQKIS 589


>gi|229161125|ref|ZP_04289112.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus R309803]
 gi|228622221|gb|EEK79060.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus R309803]
          Length = 389

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 103/367 (28%), Positives = 185/367 (50%), Gaps = 11/367 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P +  A   AG+ + T IQ + IP +L+  DV   + TGTGKT +++LP+L  +      
Sbjct: 7   PFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI---NPE 63

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           V+ P+ ++L PTREL  Q+ +  +K+     ++ A LIGG   + Q +KL++   V++ +
Sbjct: 64  VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLKKHPRVIVGS 123

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGRIL+     KL M+ ++ +V DE D+++    +  +Q++       RQ + FSATMT 
Sbjct: 124 PGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQLVFFSATMTK 183

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
             +  + +    P+   V    S +         TY    ++                 +
Sbjct: 184 AAEDAARDLAVEPQVARVTRAESKSLVE-----HTYIICERREKNDYVRRIMHMGDVKAV 238

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
            F N    +  +   L+ +     A+H    ++ R   +  F+ G +++++A+D+AARG+
Sbjct: 239 AFLNDPFRLDEITQKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGI 298

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE---K 366
           DI D+ HV + ++P+  + YIHR GRTGR G+ G   +LV +++ + +    K +     
Sbjct: 299 DIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERKLLQFAKKLGIVFT 358

Query: 367 KVDWLNG 373
           K +  NG
Sbjct: 359 KQEMFNG 365


>gi|26337015|dbj|BAC32191.1| unnamed protein product [Mus musculus]
          Length = 462

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 114/389 (29%), Positives = 189/389 (48%), Gaps = 8/389 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P +  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +             LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +++  
Sbjct: 131 LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINN 190

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +            N+++LV+DEADR+LDMGF   +  I   +P  RQTL
Sbjct: 191 INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTL 250

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L++P+ + V+  +  +            +   +   +      
Sbjct: 251 LFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELH-QKISVLFSFLR 309

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA--IHGNIDQRSRMKILSNFKEGTIQLM 299
               K  I+F +  K V  L     +    +    +HG   Q  RM++ + F      ++
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVL 369

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   + + +  
Sbjct: 370 FATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQGM-- 427

Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKID 386
           +++L++KKV    +  +   L    +K++
Sbjct: 428 VQQLLQKKVPVKEIKINPEKLIDVQKKLE 456


>gi|297529359|ref|YP_003670634.1| DEAD/DEAH box helicase [Geobacillus sp. C56-T3]
 gi|297252611|gb|ADI26057.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. C56-T3]
          Length = 436

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 135/441 (30%), Positives = 217/441 (49%), Gaps = 16/441 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ A+    + KPT IQ + IP  L+   + G +QTGTGKT +++LP++ 
Sbjct: 5   QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIIE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVAD----NFEKYGKNYNLTVALLIGGIPFEAQNK 117
            ++  RA V+     I  PTRELA Q+        +   K+  +    LIGG   +   +
Sbjct: 65  KIKPERAEVQAV---ITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL     ++I TPGRI D      L ++   ILV+DEAD MLDMGFI  +  I + +P  
Sbjct: 122 KLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKD 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+ ++L+   + +++NP  + VN   +  E IEH          ++   L +
Sbjct: 182 LQMLVFSATIPEKLKPFLKKYMENPTFVHVNPKQTANENIEH---VLIPLRGREKTKLLR 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         I+F N +K    +   L +QG  V  +HG++  R R K+++  ++   Q
Sbjct: 239 DVLLSYNPYLAIVFVNTRKMADEVADRLAEQGLKVGVLHGDLTPRERRKMMNLIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N+++P+  + YIHR GRT RAG  G A T+    D   I
Sbjct: 299 YVVATDLAARGIDIEGVSHVINYELPDDLQFYIHRAGRTARAGYSGIAATIYEPSDQDAI 358

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
             +EK+    V  D + G+   L P     +        K++ +        + K+    
Sbjct: 359 ARLEKMGISFVHRDLVRGEWKELPPW----NRRSKRAGEKDDELALLFAKLKKTKQVKPG 414

Query: 416 QKSHIPLKESEKISKLQQDIQ 436
            K  +  +  +K  +L +  +
Sbjct: 415 YKKKLRAELEKKKKRLGRFKK 435


>gi|296877050|ref|ZP_06901091.1| ATP-dependent RNA helicase DbpA [Streptococcus parasanguinis ATCC
           15912]
 gi|296431911|gb|EFH17717.1| ATP-dependent RNA helicase DbpA [Streptococcus parasanguinis ATCC
           15912]
          Length = 453

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 117/366 (31%), Positives = 183/366 (50%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +    P +  A+ +  + + T +Q K IP+VL  +D+ G ++TG+GKT +F+LP+ 
Sbjct: 7   MKFTEFNFKPYIQEALKEINFREATEVQEKLIPIVLAGNDLVGESKTGSGKTHTFLLPIF 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-- 118
             L +   +V      I  P+RELA Q+     +   +    + ++      +   +   
Sbjct: 67  QTLNEESEQVEAV---ITAPSRELATQIYQAARQIASHSEKEIRIVNYVGGTDKSRQIEK 123

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              +   ++I TPGRI D    G L ++     V+DEAD  LDMGF+  +  I S +P  
Sbjct: 124 LQVKQPHIVIGTPGRIYDLVASGDLAIHKAHTFVVDEADMTLDMGFLSTVDKIASRLPQQ 183

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  +ETI++  V+T  +   +      
Sbjct: 184 LQFLVFSATIPQKLQPFLKKYLSNPVMEQIKTKTVISETIDNWLVSTKGRDKNEQIYQL- 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K    +L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 243 --TKTLQPYLAMIFVNTKTRADDLHAYLVAQGLKVAKIHGDIPPRERKRIMNQVKNLDFE 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 301 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGVAITLYQPSDDSDI 360

Query: 358 DAIEKL 363
             +EK+
Sbjct: 361 RELEKM 366


>gi|156083174|ref|XP_001609071.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
           containing protein [Babesia bovis T2Bo]
 gi|154796321|gb|EDO05503.1| DEAD/DEAH box helicase and  helicase conserved C-terminal domain
           containing protein [Babesia bovis]
          Length = 454

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 132/411 (32%), Positives = 211/411 (51%), Gaps = 12/411 (2%)

Query: 23  KPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTR 82
            PTPIQ+  IP  L   DV G+A TG+GKT +F +P+L  L +   R+      +L P+R
Sbjct: 54  HPTPIQMAAIPHALNGRDVIGLAVTGSGKTGAFTIPVLHHLLEDVQRIYCV---VLAPSR 110

Query: 83  ELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142
           EL  Q+A+ F     +  L V ++IGG+    Q   L +   V++ +PGR+ DH    K 
Sbjct: 111 ELCEQIAEQFRALSSSIALQVCVIIGGVDMVHQASALAKRPHVIVASPGRLADHVENTKG 170

Query: 143 LM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQN 201
              + ++ LVIDEADR+L   F   +  I   +P  RQT LFSATMT +L K+ +  L++
Sbjct: 171 FSLSTVKKLVIDEADRLLSQDFDEELDKIIHAMPTERQTFLFSATMTKKLSKLQKMALKD 230

Query: 202 PKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNL 261
           P  ++V+   STAE ++  F+    +Y            +  T       C+  +     
Sbjct: 231 PISVQVDDKYSTAENLDQRFLLVPQKYKYTYLAALLWYYATRTAIVFCKTCDGAQRCAAY 290

Query: 262 CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321
              L+        +HG + Q  R + L  FK G++ ++VA+++  RGLD+P V  V NFD
Sbjct: 291 LKGLKFTTICKVCLHGKMTQADRSRALQIFKTGSVNILVATEVGGRGLDLPMVELVINFD 350

Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           +P  +++YIHR+GRT RAGR G A T+V + D++    IE  + KK++    + + L+  
Sbjct: 351 IPECSKDYIHRVGRTARAGRSGLALTVVTQYDVELFQRIELALNKKLE----EFTDLD-- 404

Query: 382 LEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLK-ESEKISKL 431
            E   +A+H    ++    Q      + + N + + S    K E+ K  +L
Sbjct: 405 -EDTALAKHALCAESLRRVQSEKLNHKGRTNTNKRVSKFQAKYEAAKRKRL 454


>gi|319427373|gb|ADV55447.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 432

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 126/419 (30%), Positives = 203/419 (48%), Gaps = 7/419 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGL+  ++ A+       PT +Q   IP +L   DV  +AQTG+GKT +F LP+L
Sbjct: 20  LTFTKLGLNSALIKALPAM-LQCPTLVQQLAIPAILAGRDVLALAQTGSGKTLAFGLPLL 78

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + + +A+  +         +   A  A      G     T+   +     + Q  +L 
Sbjct: 79  QSVLEQQAQALVLVPTRELAQQVTLALQAVAQPLSGAMKIQTLCGGV---DIDNQLIELA 135

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ TPGRILD   +  + +++I+ LV+DEADR+L+MGF P +Q + +L+P  +QT
Sbjct: 136 ERPQILVATPGRILDLCKQSHITLDSIKHLVLDEADRLLEMGFWPDVQKLIALMPKHKQT 195

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ + L  ++   L N         +++        +    + SK  AL+  L Q
Sbjct: 196 LLFSATLPEALDTLASQLLINDPLRVQAHKANSVVPHIEEQLYLVNKGSKTQALIALLKQ 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F + + +   +   L K G  V A+HG  DQ  R + L++FK   IQ++V
Sbjct: 256 YQWP--QVLVFISARDDADAVAKRLAKAGMKVAALHGEKDQTVRSQTLADFKAKRIQILV 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V N D+P  A  Y+HRIGRT RAG  G A +LV   ++  +  I
Sbjct: 314 ATDLMARGIHIDALPVVVNLDLPMSAPVYVHRIGRTARAGTKGLAISLVCHGEMATLTTI 373

Query: 361 EKLIEKKVDW-LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
             L E+ +   L  D    + P E++   +    R            ++ K +    K 
Sbjct: 374 RGLTERALPLTLLADFPVTDKPSEQVSDGKVERKRPPRDKQANRRSINKHKASEFKGKR 432


>gi|126175005|ref|YP_001051154.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125998210|gb|ABN62285.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 427

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 143/422 (33%), Positives = 215/422 (50%), Gaps = 24/422 (5%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI-- 62
            LG+   ++  + +  YV PTP+Q  TIP VL   DV   A TG+GKTA+F +P+L    
Sbjct: 13  QLGIIAPLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLV 72

Query: 63  -LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNKKL 119
             +         R L+L PTRELA QVAD+F  Y  + N    +    GG+   AQ + L
Sbjct: 73  EAKTDDKTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQSL 132

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GADVL+ TPGR+LD  +   + +N +  LV+DEADRML +GF   +  +   +P  +Q
Sbjct: 133 RAGADVLVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQ 192

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +E+++++   L +P   +  +     E                   L   L
Sbjct: 193 TLLFSATFPEEVRELTAKLLNDPLEYQFQS-----EQESTIHQRVITVNRPMKTALLAHL 247

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      +IF + K    +L   L K+G S    HG+  Q +R ++L  FK G I ++
Sbjct: 248 IKEHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVL 307

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI  +  V NFD+P    +Y+HRIGR+GRAG  G A TL++ ED  H   
Sbjct: 308 IATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGV 367

Query: 360 IE-----KLIEKKV------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           IE     KL+ +++      D +  +L     P+ K +       +K   +P  +  F  
Sbjct: 368 IEKKNKLKLVREQIVGFEADDEMPAELLEQAKPVAKPE---GTGKKKRKQLPPANAEFWG 424

Query: 409 RK 410
           +K
Sbjct: 425 KK 426


>gi|325119657|emb|CBZ55210.1| ATP-dependent RNA helicase DDX55,related [Neospora caninum
           Liverpool]
          Length = 569

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 114/364 (31%), Positives = 187/364 (51%), Gaps = 6/364 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L +   V  A+ +    + T IQ K IP +L+  DV G A+TG+GKT +F++P + +
Sbjct: 87  FESLDICEPVKKALAEMKMERLTEIQAKAIPRLLEGRDVLGAAKTGSGKTLAFLVPAVEL 146

Query: 63  LEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + +   R    +I + PTREL+ Q+ D   +  K    T+ L+IGG   + + +KL++
Sbjct: 147 LYQVKFLPRNGTGVIVISPTRELSLQIFDVAAELSKFLPQTLGLVIGGANRKHEVEKLQK 206

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEIL-VIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           G ++L+ TPGR+LDH    K    +  +  VIDEADR+L +GF   +  I  ++P TRQT
Sbjct: 207 GVNILVATPGRLLDHLQNTKGFQYSNLLSLVIDEADRILQIGFEEEMNAILQMLPQTRQT 266

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT + ++  ++   L+ P  +       T  T+           +++  LL     
Sbjct: 267 CLFSATQSAKVADLARLSLKKPVFV---EVKDTVATVRGIQQGYVVCPAEERFLLLFTFL 323

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++  K  ++F +   +V                IHG   Q +RM    +F      +++
Sbjct: 324 KKNREKKIMVFFSSCMSVRFHDELFNYIDLPTTCIHGKKKQNARMSTYYDFCNAEKGILL 383

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKHIDA 359
            +D+AARGLDIP V  +  +D P+  + YIHR+GRT R AG  GKA   +  E+I  +  
Sbjct: 384 CTDVAARGLDIPKVDWIVQYDPPDDPKEYIHRVGRTARGAGGTGKALLFLMAEEIGFLRY 443

Query: 360 IEKL 363
           +++ 
Sbjct: 444 LKQA 447


>gi|70999626|ref|XP_754530.1| ATP dependent RNA helicase (Dbp8) [Aspergillus fumigatus Af293]
 gi|74674345|sp|Q4WXW1|DBP8_ASPFU RecName: Full=ATP-dependent RNA helicase dbp8
 gi|66852167|gb|EAL92492.1| ATP dependent RNA helicase (Dbp8), putative [Aspergillus fumigatus
           Af293]
          Length = 526

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 117/431 (27%), Positives = 191/431 (44%), Gaps = 19/431 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L ++P +V ++      KPT IQ   IP +L+  D  G ++TG+GKT +F +PML 
Sbjct: 97  SFAALNVAPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFSVPMLQ 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +          ++L PTRELA Q+ +  +      ++   L+ GG     Q   L  
Sbjct: 157 KWAE---DPFGIFGVVLTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRPQAIALAG 213

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM-------GFIPYIQNITSLV 174
              V+I TPGR+ DH              V        D          +P ++   S +
Sbjct: 214 RPHVVIATPGRLADHIKSSGEDTVCGLKRVRMVVLDEADRLLASGPGSMLPDVETCLSAL 273

Query: 175 PFTRQTLL--FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           P + +     F+AT+T E++ +        K     T  ST                   
Sbjct: 274 PPSSERQTLLFTATVTPEVRALKNMPRSANKPPVFVTEISTENQGTIPPTLKQTYLKVPL 333

Query: 233 ALLQQLLQ-----SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
              +  L        +  K  I+FCN  K    L   L +    V ++H  + Q  R   
Sbjct: 334 THREAFLHVLLSTEGNASKPAIVFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSERNAN 393

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L+ F+    +++VA+D+A+RGLDIP V  V N+DVP   ++Y+HR+GRT RAGR G+A T
Sbjct: 394 LARFRASAARILVATDVASRGLDIPTVSLVINYDVPRNPDDYVHRVGRTARAGRRGEAVT 453

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           LV + D++ + AIE+ + ++++  + +  S+   L +    +     K   + +   G D
Sbjct: 454 LVGQRDVQLVLAIEERVGRQMEEWSEEGVSIEGRLVRTGALKEVGEAKREAMVEIDEGRD 513

Query: 408 --RRKKNYSSQ 416
              RK+N   +
Sbjct: 514 VLGRKRNKLKK 524


>gi|332995376|gb|AEF05431.1| ATP-dependent RNA helicase DbpA [Alteromonas sp. SN2]
          Length = 460

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 199/367 (54%), Gaps = 7/367 (1%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
             L ++P +  A+   G    +PIQ +++P  L   DV G AQTG+GKT  FV+P L  +
Sbjct: 7   KQLEINPAITKALDAQGIFTLSPIQAQSLPHALAGSDVIGQAQTGSGKTLCFVIPALEKI 66

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLERG 122
           +     +   + L+L PTRELA QVA  +    K       + I  G P   Q + L+ G
Sbjct: 67  DPT---LFATQVLVLCPTRELADQVAVQYRNAAKQIGNIKVMTICGGQPMGPQIQSLKHG 123

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A V++ TPGR+++H  + +L++ ++ + V+DEADRMLDMGF   ++ I S +    QTLL
Sbjct: 124 AHVVVGTPGRVMEHVEKRRLMLKDVRLRVLDEADRMLDMGFEDDLKVIFSPMKKGVQTLL 183

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT T+E++++++ +L  P   +V +  S   +I                   + + + 
Sbjct: 184 FSATYTEEIERIADQYLTEPVICKVESDESNKPSITQIGYNVLPH---TRIQTLKAILTD 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              K  I+FCN++  V  +  SL + GFS   + G ++Q  R  +L+ F    +Q++VA+
Sbjct: 241 SQPKTAIVFCNRRVQVTEVVASLLEDGFSAAGLQGEMEQYERTAVLNQFASDALQVLVAT 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLDI D+  V N+ V    E +IHRIGRT RAG  G A TLV  E+   +  IE 
Sbjct: 301 DVAARGLDIDDIPCVINYTVSEEPETHIHRIGRTARAGAEGTAITLVGDEEEHFLRKIEV 360

Query: 363 LIEKKVD 369
           L    + 
Sbjct: 361 LQGTDIP 367


>gi|294667681|ref|ZP_06732893.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292602521|gb|EFF45960.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 430

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 127/376 (33%), Positives = 192/376 (51%), Gaps = 10/376 (2%)

Query: 1   MDFADLGLSPKVV----CAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFV 56
           M F+DL LSP++      A+  AG   PTPIQ + IP +L   D+  +AQTG+GKT ++ 
Sbjct: 1   MSFSDLSLSPQLQPFFDTALARAGLRTPTPIQQQAIPPMLDGRDLIAMAQTGSGKTLAYA 60

Query: 57  LPMLTILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLT--VALLIGGIPFE 113
           LP+L                L+L PTRELAAQV D   +   +        +  GG    
Sbjct: 61  LPLLQQRCLAPDTAPRVLGALVLVPTRELAAQVEDTLRQLAAHLPRRLKSVVATGGSSIN 120

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  GAD+++ TPGR+LD      L ++    LV+DEADR+L++GF   +  I +L
Sbjct: 121 PQLLALRGGADIVVATPGRLLDLVEHNALRLSEAATLVLDEADRLLELGFGAELDRILAL 180

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQT+LFSAT    +  +++  L++P RI ++    T E          A  + +  
Sbjct: 181 LPAQRQTVLFSATFPPAIASLAKRRLRDPLRITIDA---TPEQAPAIAQRAIAVDAGQRT 237

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L + L  +      ++F   + +   +   L K G +   +HG + Q  R + L  FK+
Sbjct: 238 QLLRHLLLEHAWPQLLVFVASRHSAEKVAEKLSKTGIAALPLHGELSQGRRERTLRAFKQ 297

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             +Q++VA+DLA RG+DI  +  V N+D+P    +Y HRIGRT RAG  G A + V  + 
Sbjct: 298 ADVQVLVATDLAGRGIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGVAISFVTADS 357

Query: 354 IKHIDAIEKLIEKKVD 369
            +    IEK    +V 
Sbjct: 358 AQQWRLIEKRQGLRVP 373


>gi|270290969|ref|ZP_06197192.1| ATP-dependent RNA helicase YqfR [Pediococcus acidilactici 7_4]
 gi|270280365|gb|EFA26200.1| ATP-dependent RNA helicase YqfR [Pediococcus acidilactici 7_4]
          Length = 453

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 129/459 (28%), Positives = 216/459 (47%), Gaps = 27/459 (5%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M+ F    L P ++ A+   G+VKPTP+Q + IPL+ +   V G +QTG+GKT +F+LP+
Sbjct: 1   MNEFQKFNLKPFLMQALDQIGFVKPTPVQERVIPLIAEGQSVVGQSQTGSGKTHAFLLPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQN 116
              ++  +  ++     I  P+RELA Q+ +  ++        + +              
Sbjct: 61  FNQIDPAKNAIQAV---ITTPSRELAYQIYEAAKQLAAASETPIEIGNYVGGTDKKRQIA 117

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K       ++I TPGR+LD      L    +  LVIDEAD  LDMGF+  +  I + +P 
Sbjct: 118 KLEHHQPAIVIGTPGRVLDLLQARALNFRQVRYLVIDEADMTLDMGFLSAVDQIAASMPE 177

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q L+FSAT+  +L    + ++++P   E+   ++ + TI++  ++T +Q         
Sbjct: 178 NLQMLVFSATIPQQLNVFLQKYMEHPAIEEIPVATTISPTIKNILISTKSQDKNNLIYQL 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               +       ++F N K+    L + L+ QG  V  IHG I  R R +I+ +      
Sbjct: 238 L---TMGEPYLALVFTNTKERADELTNYLKSQGLPVAKIHGGIPPRERKRIMKDIHRLRY 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VA+DLAARG+DI  V  V N D+P   E +IHR+GRTGR G  G A TL    +   
Sbjct: 295 QYVVATDLAARGIDIEGVSLVINDDIPTDLEFFIHRVGRTGRNGLPGTAITLYMPNEEAE 354

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP---------IPQKSTGFD 407
           +  +EK+  K +     +   ++    +    +    +K +P           +   G+ 
Sbjct: 355 VAEVEKMGVKFIPQQLRNHELVDTYDRQRRQTRRLSQKKLDPTLVGLVKKKKKKVKPGYK 414

Query: 408 RRKKNYSSQKS--------HIPLKESEKISKLQQDIQEN 438
           RR K   S+K+        H  ++E++K    Q   +  
Sbjct: 415 RRIKKAISEKAIRDRRMEQHQAVREAKKAKMRQSRSKRR 453


>gi|319939694|ref|ZP_08014053.1| ATP-dependent RNA helicase [Streptococcus anginosus 1_2_62CV]
 gi|319811283|gb|EFW07589.1| ATP-dependent RNA helicase [Streptococcus anginosus 1_2_62CV]
          Length = 447

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 121/366 (33%), Positives = 181/366 (49%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F +      +  A+ D  +V+ T +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MEFTEFKFKDYIQEALKDLNFVEATEVQEKLIPVVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKK 118
             L +    V++    I  P+RELA Q+     +     +  + VA  +GG     Q  K
Sbjct: 61  QKLNEDADSVQVV---ITAPSRELARQIYQAARQIAAFSDKEIRVAHYVGGTDKNRQIGK 117

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++     V+DEAD  LDMGF+  +  I S +P  
Sbjct: 118 LSSSQPHIVIGTPGRIYDLVESGDLAIHKAHTFVVDEADMTLDMGFLMTVDKIASSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  ++TI        +   +       
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVISDTI---ENWLISTKGRDKNAQIY 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 235 EITQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 RELEKM 360


>gi|307105760|gb|EFN54008.1| hypothetical protein CHLNCDRAFT_31911 [Chlorella variabilis]
          Length = 556

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 135/422 (31%), Positives = 206/422 (48%), Gaps = 48/422 (11%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L P ++  V    Y KPTP+Q  +IP+ L   D+   AQTG+GKTA+F  P++ 
Sbjct: 33  SFEDVDLPPALMENVKRCKYNKPTPVQRYSIPIGLAGRDMMACAQTGSGKTAAFCFPIIG 92

Query: 62  ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            + +         R   P  L+L PTREL+ Q+ D   K+     +   ++ GG P + Q
Sbjct: 93  NILRSGYTPLRGSRKAFPLALVLSPTRELSTQIYDESRKFTYQTGVRPVVVYGGAPQQQQ 152

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI----- 170
            ++LERG D L+ TPGR++D  +R ++ +  +  L +DEADRMLDMGF P I+       
Sbjct: 153 LRELERGCDFLVATPGRLIDIMDRARVSLGKVRFLALDEADRMLDMGFEPQIRRRGPLPG 212

Query: 171 ----------------------------------TSLVPFTRQTLLFSATMTDELQKVSE 196
                                                 P  RQTLLFSAT   E+Q+++ 
Sbjct: 213 LPRLSPSPAAAPEAWPCRRGLPRPRRNPPIVDEEDMPRPGERQTLLFSATFPKEIQRLAA 272

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256
           +FL N   + V    S+ + I         Q  ++  L       +      +IF   KK
Sbjct: 273 DFLHNYIFLTVGRVGSSTDLIVQVIEYVPIQDKRQMVLDLLQTLEK---GLTLIFVETKK 329

Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316
               L   L + G    +IHG+  Q  R   L +F+ G   ++VA+D+AARGLDIP V H
Sbjct: 330 GADALEDFLCRNGLPATSIHGDRSQAEREAALRSFRTGRTPVLVATDVAARGLDIPHVTH 389

Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
           V NFD+P+  ++Y+HRIGRTGRAG+ G A    +++D      + +++ +    +   L 
Sbjct: 390 VINFDLPSDIDDYVHRIGRTGRAGKKGLATAFFSEKDTGISSKLVEILSETNQEVPAWLQ 449

Query: 377 SL 378
           ++
Sbjct: 450 NM 451


>gi|169607499|ref|XP_001797169.1| hypothetical protein SNOG_06807 [Phaeosphaeria nodorum SN15]
 gi|182676401|sp|Q0UN57|PRP5_PHANO RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|160701425|gb|EAT85458.2| hypothetical protein SNOG_06807 [Phaeosphaeria nodorum SN15]
          Length = 1184

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 123/442 (27%), Positives = 199/442 (45%), Gaps = 21/442 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A +GL  + +      GY +PT IQ + IP+     D+ G+A+TG+GKT +F +PM+ 
Sbjct: 545 KWAQMGLLQQTMDVFTRVGYARPTAIQAQAIPIAESGRDLIGVAKTGSGKTLAFGIPMIR 604

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               ++       P  LIL PTREL+ Q+ +  + +     +T+    GG P   Q   +
Sbjct: 605 HVLDQRPLKPADGPIGLILAPTRELSLQIVNELKPFLNASGITIKCAYGGQPISDQIAMI 664

Query: 120 ERGADVLICTP----GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           +RG   ++C        +L   +   L    I  +V+DEADRM DMGF P +  I + + 
Sbjct: 665 KRGGIHILCATAGRLIDLLQSNSGRVLSFRRITYVVLDEADRMFDMGFEPQVMKILASIR 724

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT+LFSAT    +  ++   L  P  + +   S  A  I          Y KK A L
Sbjct: 725 PDRQTILFSATFPKTMAALARKALDKPAEVIIGGRSKVAPEITQHITIVPPSYEKKIAKL 784

Query: 236 QQL---LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                   S D     +IF  +++   +L   L K  +           ++      N  
Sbjct: 785 LHHLGQTFSDDENAQVLIFTERQETAEDLLSKLFKAKYFAVNTIHGAKDQTDRNEAINEF 844

Query: 293 EGT-IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-A 350
           +   + +++A+ +AARGLD+P +  V+NFD P   E+Y+HR GRTGRAG  G A TL+  
Sbjct: 845 KQGLLNILIATSVAARGLDVPGLALVYNFDCPTHLEDYVHRCGRTGRAGNKGLAVTLIEN 904

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
               +    I K +++    +  DL ++ N   EK+         K+      + GF  +
Sbjct: 905 PGQERFAVHIVKALKESGAEVPDDLQAMANAFHEKV---------KSGTEKYYNVGFKGK 955

Query: 410 KKNYSSQKSHIPLKESEKISKL 431
             +       +  K  ++  KL
Sbjct: 956 GLDELDASRALDKKREKRALKL 977


>gi|18310498|ref|NP_562432.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens str. 13]
 gi|18145178|dbj|BAB81222.1| probable RNA helicase [Clostridium perfringens str. 13]
          Length = 407

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 119/374 (31%), Positives = 204/374 (54%), Gaps = 8/374 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           MD F  LGLS +V+ +++  G  +PT IQ K IP +L   +V G A+TGTGKT +++LP+
Sbjct: 3   MDKFLKLGLSEEVLKSLVGLGIEEPTDIQEKAIPEILSGKNVIGKAETGTGKTLAYLLPI 62

Query: 60  LTILEKGRARVRMPRTLILEPTRE--LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +  ++  +  ++     IL PT E  +      N  K G    +T   L+G    + Q +
Sbjct: 63  IEKIDDSKNEMQAI---ILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQIE 119

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+    +L+ T GRIL+  N+ K+  N I+ +VIDE D++LD   I  ++++    P  
Sbjct: 120 KLKNKPHILVGTTGRILELINKKKITTNTIKTIVIDEGDKLLDFINIKDVRSVVKSCPRD 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSATM ++  + ++  +   + I+    +   E IEH +     +       L++
Sbjct: 180 TQKLIFSATMNEKALETADELIGISELIQAKAANKVNENIEHGYFQVELRDK--IDFLRK 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ +    K  I+F N   NV N+   L+       ++HG+ ++  R K L +F+ G  +
Sbjct: 238 LIHAIGDEKKIIVFINNSYNVHNVIQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAK 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ SD++ARGLDI    H+ N D+P  ++NY+HR+GR GRAG  G A++L   ++ K I
Sbjct: 298 VLITSDVSARGLDIKGATHIVNLDIPMNSQNYLHRVGRVGRAGEKGFAYSLADYKEEKII 357

Query: 358 DAIEKLIEKKVDWL 371
              E+ ++ K+  +
Sbjct: 358 VKCERQLKIKIPRV 371


>gi|255951046|ref|XP_002566290.1| Pc22g24000 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593307|emb|CAP99688.1| Pc22g24000 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 442

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 95/373 (25%), Positives = 163/373 (43%), Gaps = 5/373 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++ A+ D G+  P+ +Q   IP  +   DV   A++G GKTA FVL  L  
Sbjct: 61  FRDFLLKGELLRAITDCGFEHPSEVQQVCIPTSILNVDVLCQAKSGLGKTAVFVLTTLHQ 120

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           LE      ++       E   ++  + A   +                          E 
Sbjct: 121 LEPVPGECQILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEILSNKET 180

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFIPYIQNITSLVPFTRQT 180
             ++++ TPGR+       KL + N++  V+DE D+M   +     +Q I    P  +Q 
Sbjct: 181 HPNIVVATPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQV 240

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ E++ + + F+ NP  + V+  +         +     +  K   L +    
Sbjct: 241 MMFSATLSQEIRPICKKFMHNPLEVYVDDDTKLTLHGLQQYYIKLDEKEKNRKLNEL--L 298

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF    +    L   L +  F   A+H  + Q  R+K    FKE   ++ V
Sbjct: 299 DNLEFNQVIIFVKSTQRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICV 358

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDA 359
           A+D+  RG+DI  +    N+D+P  A++Y+HR+GR GR G  G + + V+ ++D K +  
Sbjct: 359 ATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSNEDDEKVLKE 418

Query: 360 IEKLIEKKVDWLN 372
           IEK  E  +    
Sbjct: 419 IEKRFEVALPEYP 431


>gi|121699888|ref|XP_001268209.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
 gi|134034061|sp|A1CTZ6|DBP10_ASPCL RecName: Full=ATP-dependent RNA helicase dbp10
 gi|119396351|gb|EAW06783.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
          Length = 935

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 127/407 (31%), Positives = 205/407 (50%), Gaps = 42/407 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  ++ A+   G+  PTPIQ KTIP+++   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 91  FQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIPMIEK 150

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R LIL P+RELA Q     ++ GK  +L   LL+GG   E Q   +   
Sbjct: 151 LRSHSTKVGA-RGLILSPSRELALQTLKVVKELGKGTDLKCVLLVGGDSLEEQFTMMAGN 209

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L + +I  +V DEADR+ +MGF   +  I   +P  RQTLL
Sbjct: 210 PDIVIATPGRFLHLKVEMNLDLYSIRYVVFDEADRLFEMGFAAQLTEILHGLPPNRQTLL 269

Query: 183 FSATMTDELQKVSE--------------------------------------NFLQNPKR 204
           FSAT+   L + +                                         L    +
Sbjct: 270 FSATLPKSLVEFARAGLQEPTLIRLDTESKISPDLQNAFFSIKSSEKEGALLYILHEVIK 329

Query: 205 IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ---LLQSQDTMKNGIIFCNQKKNVVNL 261
           +         +       A +++ +K+     +     +   T  + I+F   K +V  L
Sbjct: 330 MPTGPTEMAQQRQGEDASARFSKANKRKRAEMEKAVNTKESPTQHSTIVFAATKHHVDYL 389

Query: 262 CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321
              L + GF+V  ++G +DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D
Sbjct: 390 YSLLHEAGFAVSYVYGALDQTARKIQVQNFRSGLSNILVVTDVAARGIDIPILANVINYD 449

Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            P++ + +IHR+GRT RAGR G +++LV   D  ++  ++  + +++
Sbjct: 450 FPSQPKIFIHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRRL 496


>gi|171061032|ref|YP_001793381.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170778477|gb|ACB36616.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 417

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 132/374 (35%), Positives = 203/374 (54%), Gaps = 7/374 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGL P +V A    G ++PTPIQ + IP +L+  DV G A+TG+GKTA+F LP+L
Sbjct: 1   MSFVSLGLLPALVSAAQAHGLLRPTPIQAEAIPAILRGVDVLGAARTGSGKTAAFALPLL 60

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNK 117
             L+       R  + L+L PTRELA QV +  E    +      + +  GG+    Q  
Sbjct: 61  QRLQPCLGEWRRRTQALVLVPTRELALQVGEVLEDLSSHLVEPPRIVIAFGGVSINPQMM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY-IQNITSLVPF 176
            L  GA+V++ TPGR+LD      L ++ +  LV+DEADR+LD+GF     +    L P 
Sbjct: 121 ALRGGAEVVVATPGRLLDLLGHNALRIDTLNTLVLDEADRLLDLGFADELARIRAQLPPR 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q L FSAT  +E+Q +++ +L  P RIE+   ++    I    +   A          
Sbjct: 181 RFQHLFFSATFPEEVQALADEWLHEPVRIELQADAAETPDITQRAIEVDATRRTPL---L 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + L ++   +  ++F   +     L H L + G    A+HG + Q +R   L+ F++  +
Sbjct: 238 RKLLAEPGWEQALVFVATRYATELLAHKLHRSGIKAAALHGELSQGARNAALAAFRQREL 297

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  +  V NFD+P   ++Y HRIGRTGRAG  G+A + ++ +   H
Sbjct: 298 QVLVATDVAARGIDIARLPVVVNFDLPRSTDDYTHRIGRTGRAGEVGQAVSFISADTEAH 357

Query: 357 IDAIEKLIEKKVDW 370
              IEK  +++V  
Sbjct: 358 FRLIEKRQQQRVPR 371


>gi|322828080|gb|EFZ32019.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 874

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 106/362 (29%), Positives = 169/362 (46%), Gaps = 4/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS +    +   GY + TPIQ   + L L  +DV G A+TG+GKT  FV+P+L  
Sbjct: 69  FNQLPLSQRTQLGLERGGYKRMTPIQSDALHLALAGYDVLGAAKTGSGKTLCFVVPVLER 128

Query: 63  LEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   +    M     +L PTRELA Q+    +  G  +  + ALL GG   E + K+L  
Sbjct: 129 LFVEQWDTAMGVGALVLSPTRELALQIFKVLQLVGYKHTHSAALLTGGRDVEEERKRLAA 188

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +    +   L+ +N+++ V+DEADR+LDMGF   I  I   +P  RQTL
Sbjct: 189 INVIVGTPGRVLHHLEDDADLVTDNMQLFVMDEADRLLDMGFRDAICGIMRHLPTARQTL 248

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T ++Q +++  L+N + +  +  ++       C      +  +K   L   L+ 
Sbjct: 249 LFSATQTTDVQMLAQMSLRNQRYVTTHASTAAPTPATLCQNFIVVELHRKLDALLMFLKR 308

Query: 242 QDTMKNGIIFCNQKKNVVNL---CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               K  +      +           L+K       +   + Q  R ++   F      +
Sbjct: 309 HPNDKTVVFVSTCNQVRYMYLAFSKILKKMRIPSMCLTSKMKQFRREEVFLTFCRCKAAV 368

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +  +D+AARGLD P V     +D P+ A+ YIHR GRT RAG  G +   +  ++   + 
Sbjct: 369 LFCTDIAARGLDFPLVHWAVQYDCPDSAQTYIHRAGRTARAGARGVSLLFLTPQETPMLS 428

Query: 359 AI 360
            +
Sbjct: 429 FL 430


>gi|26344732|dbj|BAC36015.1| unnamed protein product [Mus musculus]
          Length = 660

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 119/392 (30%), Positives = 199/392 (50%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP- 58
            FA L   ++   + A+ + G+ + T IQ K+I  +L+  D+   A+TG+GKT +F++P 
Sbjct: 168 SFASLSNLVNENTLKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPV 227

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  I++           LIL PTRELA Q     ++   ++  T  L++GG    A+ +K
Sbjct: 228 IELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQK 287

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L  G ++++ TPGR+LDH       +  N++ LVIDEADR+LD+GF   ++ I  L+P  
Sbjct: 288 LLNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPAR 347

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+               T++          S+K  LL  
Sbjct: 348 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLF 407

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V AIHG   Q  R      F      
Sbjct: 408 TFLKKNRKKKVMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSG 467

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIK 355
           +++ +D+AARGLDIP+V  +  +D P+  +  IHR+GRT R   GR G A  ++  E++ 
Sbjct: 468 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKECIHRVGRTARGLNGR-GHALLILRPEELG 526

Query: 356 HIDAIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++  K+   + D+    +S +   LEK+
Sbjct: 527 FLRYLKQSKVPLNQFDFSWSKVSDIQSQLEKL 558


>gi|317575817|ref|NP_001187807.1| spliceosome RNA helicase bat1 [Ictalurus punctatus]
 gi|308324021|gb|ADO29146.1| spliceosome RNA helicase bat1 [Ictalurus punctatus]
          Length = 426

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 103/383 (26%), Positives = 173/383 (45%), Gaps = 5/383 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+V+ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FV+  L  
Sbjct: 45  FRDFILKPEVLRAIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVIATLQQ 104

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     +     L                               G           +  
Sbjct: 105 LDPEEEGMTRVLVLCHTRELAYQISKEYERFSKYMPKIKVGVFFGGMPLRRDIESFGKGA 164

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFIPYIQNITSLVPFTRQTL 181
             +++ TPGRILD      L ++NI+  +IDE D+M   +     +Q+I    P ++Q +
Sbjct: 165 PHIVVGTPGRILDLIRNKALKLDNIKHFIIDECDKMLDTLDMRRDVQDIFRQTPRSKQVM 224

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM+ +++ V  NF+Q+P  I ++  S               +  K   L +     
Sbjct: 225 MFSATMSKDIRPVCRNFMQDPLEIFIDNDSKLTLHGLRQHYVKVKENEKNRKLFEL--LD 282

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      IIF    +  + LC  L  Q F   A+H ++ Q  R++    FK    +L+VA
Sbjct: 283 ELQFNQVIIFVKSVQRCIALCQLLVDQNFPAIAMHRSMSQEERLERYQAFKNFQKRLLVA 342

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAI 360
           ++L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T ++ E D + ++ +
Sbjct: 343 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDEHDAEILNDV 402

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
           +   E  +  L  D+  +   +E
Sbjct: 403 QNRFEVNISELP-DVMEIASYME 424


>gi|297834766|ref|XP_002885265.1| hypothetical protein ARALYDRAFT_479365 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297331105|gb|EFH61524.1| hypothetical protein ARALYDRAFT_479365 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 569

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 123/388 (31%), Positives = 209/388 (53%), Gaps = 6/388 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L LS +   A+ + G+   T IQ  +I  +L+  DV G A+TG+GKT +F++P + 
Sbjct: 95  TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIRPLLEGKDVLGAARTGSGKTLAFLIPAVE 154

Query: 62  ILEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L K     R    +I + PTRELA Q  +  E+  K+++ TV ++IGG    ++ +++ 
Sbjct: 155 LLLKHHFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVGMVIGGNNRRSEAQRIA 214

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            G+++LI TPGR +    N    +  +++ LVIDEADR+L+  F   +  I  ++P TRQ
Sbjct: 215 NGSNLLIATPGRLLDHLHNTKAFIYKHLKCLVIDEADRILEDNFEEDMNKILKILPKTRQ 274

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT T +++ ++   L +P  ++V+       T E          SK   +L    
Sbjct: 275 TALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKV-TNEGLEQGYCVVPSKNRLILLITF 333

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  ++F +  K+V      ++      C IHG +DQ  R K   +F +    ++
Sbjct: 334 LKKNPNKKIMVFFSTCKSVQFHAEIMKISNVDFCDIHGGLDQNRRTKTFFDFMKAKKGIL 393

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHID 358
           + +D+AARGLDIP V  +  +D P++   YIHR+GRT R  G  GKA  ++  E+++ I 
Sbjct: 394 LCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPEELQFIR 453

Query: 359 AIE--KLIEKKVDWLNGDLSSLNPPLEK 384
            ++  K+  K++++    L ++   LEK
Sbjct: 454 YLKAAKVPVKELEFNERKLMNVRSELEK 481


>gi|70953337|ref|XP_745776.1| DEAD/DEAH box ATP-dependent RNA helicase [Plasmodium chabaudi
           chabaudi]
 gi|56526204|emb|CAH78677.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Plasmodium
           chabaudi chabaudi]
          Length = 579

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 118/388 (30%), Positives = 183/388 (47%), Gaps = 7/388 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F DL +   +   + +  ++  T IQ K IP  L   D+ G A+TG+GKT +F++P + 
Sbjct: 127 KFEDLDICDALKKGLKELNFITLTEIQSKCIPHFLSGKDILGAAKTGSGKTLAFLVPSIN 186

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +             LI+ PTREL  Q+        K    T  ++IGG+    + KK  
Sbjct: 187 ILYNIKFLPKNGTGVLIISPTRELCLQIYQVCTDLCKYIPQTNGIIIGGVSRNEEKKKFI 246

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEIL-VIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            G ++LI TPGR+LDH    K       +  +IDEADR+L +GF   I  I   +P  RQ
Sbjct: 247 HGINILIATPGRLLDHMQNTKEFNYKNLVCLIIDEADRLLQIGFEEEINLIVKRLPKKRQ 306

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT T +++ +    LQ P  IEV T  +T E +             K  LL    
Sbjct: 307 TALFSATQTTKVESLIRLSLQKPIFIEVTTKIATVERL---QQGYALVDEDKRFLLLFTF 363

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  ++F N   +V      L         IHG   Q  R+K  + F      ++
Sbjct: 364 LKRNPSKKIMVFFNNCMSVQFYNDLLNYIDIPTFCIHGKKKQNQRLKSFNEFSAAKNAIL 423

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH-GKAFTLVAKEDIKHID 358
           + +++AARGLDIP+V ++  +D P+ ++ YIHR+GRT R     G A   + K ++K ++
Sbjct: 424 LCTNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCRGNDSAGSAIIFLMKHELKFLN 483

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKID 386
            + K     V+    D   L     +++
Sbjct: 484 YL-KFYNIPVNQFAYDQKKLINIQSQME 510


>gi|326426496|gb|EGD72066.1| DEAD box polypeptide 39 isoform 1 [Salpingoeca sp. ATCC 50818]
          Length = 438

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 103/404 (25%), Positives = 177/404 (43%), Gaps = 23/404 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q + IP  L   DV   A++G GKTA FV+ +L  
Sbjct: 45  FKDFSLKPELLRAIRDCGFEHPSEVQQECIPQALIGTDVICQAKSGMGKTAVFVISVLDQ 104

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+     V            +   +  + F  +     +   +  GGI   +  +KL   
Sbjct: 105 LKPVDGEVSCLVLCHARELADQIHKEFERFAAHMSPT-VRSEVFYGGIKLSSNIEKLRNP 163

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM------------GFIPYIQNI 170
             V++ TPGR+      G L + N++  VIDE D++L                   +Q +
Sbjct: 164 PHVVVGTPGRLYHLMEEGHLKLGNVKFFVIDECDKVLKPDARSIEKGSDGLDMRRKVQAL 223

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
               P  +Q ++F+AT+  E + +   F+ NP  + V+  +         +     +  K
Sbjct: 224 HMKCPRNKQVMMFTATLDKETRGLCRKFMNNPMEVCVDDDAKLKLRSLKQYYVKLTEDEK 283

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
                   L         +IF + +  V  L   LE++ F V AIHG + Q  R++    
Sbjct: 284 TR--KLLDLLDALEFNQVVIFLSSQARVRVLAKLLEQENFPVKAIHGGMRQEHRLENYRE 341

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV- 349
           FK    +++VA+D+  RG+DI  V  V N+D+P   + Y+HR+ R GR G  G A T V 
Sbjct: 342 FKSFKARILVATDVFGRGMDIERVNIVINYDMPEDTDTYLHRVARAGRFGTKGLAITFVS 401

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
             E+        +++ K     + D++ +   L+K +    + A
Sbjct: 402 TPEEA-------EILNKTQGRFDVDIAEMPATLDKSEYMADDEA 438


>gi|324994094|gb|EGC26008.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK678]
          Length = 447

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 126/407 (30%), Positives = 189/407 (46%), Gaps = 20/407 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-- 118
            IL++    V+     I  P+RELAAQ+     +        + +       +   +   
Sbjct: 61  QILDEEADSVQAV---ITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQIGK 117

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTI---ENWLLSTKGRDKNAQIY 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
             +EK +  K            P + K D  Q  + R      +KS 
Sbjct: 355 RELEK-MGIK----------FTPKMIKDDEFQDTYDRDRRANREKSR 390


>gi|239814491|ref|YP_002943401.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
 gi|239801068|gb|ACS18135.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
          Length = 661

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 132/452 (29%), Positives = 218/452 (48%), Gaps = 53/452 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH----------DVCGIAQTGTGKT 52
           F  LGL+P+++ AV D G+ +PT +Q K IPL +             D+   +QTG+GKT
Sbjct: 78  FIKLGLAPELIAAVADLGFTQPTTVQDKVIPLAMGGEAGQDGKARFVDLMVSSQTGSGKT 137

Query: 53  ASFVLPMLT---------------------------------------ILEKGRARVRMP 73
           A+F+LP+L                                               +   P
Sbjct: 138 AAFLLPVLHTLLKRQAEAEAQAKAEFQRLAAEAAARGEAVPKKPKRKDPTNARHFKAATP 197

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
             LIL PTRELA QVA +  +  ++        + G           + AD+++ TPGR+
Sbjct: 198 GALILCPTRELAQQVAHDAIELVRHCRGLRVANVVGGMPYQLQIAKLQNADLVVATPGRL 257

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193
           LD     ++ ++ ++ LV+DEADRMLD+GF   +  +  L    +QT++FSAT    +Q+
Sbjct: 258 LDLQRSMQIKLDQVKFLVVDEADRMLDLGFADDLAEVNQLTIERQQTMMFSATFAPRIQQ 317

Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
           +++  ++ P+RI +++P      I+           K+            ++   I+F +
Sbjct: 318 LAQRVMREPQRITIDSPQEKHANIKQSLYWADNSQHKRKL--LDHWLRDTSINQAIVFAS 375

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            +     L + L++ GFS  A+HG + Q  R + L   ++G +Q++VA+D+AARG+D+P 
Sbjct: 376 TQVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVAARGIDVPT 435

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWL 371
           + HVFNF +P +AE+Y HRIGRTGRAGR G A T     D + I  IE+   +  K + +
Sbjct: 436 ITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAITFAEFRDRRKIMDIEQYSRQQFKAEVV 495

Query: 372 NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
            G       P  +  + ++   R +N    + 
Sbjct: 496 AGLEPQQRMPQSRPPMGEYRGGRGDNQSRDRK 527


>gi|73994643|ref|XP_850776.1| PREDICTED: similar to DEAD-box protein 54 (ATP-dependent RNA
           helicase DP97) isoform 3 [Canis familiaris]
          Length = 889

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 121/374 (32%), Positives = 186/374 (49%), Gaps = 10/374 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F++PM   
Sbjct: 98  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFER 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 158 LKTHSAQTGA-RALILSPTRELALQTMKFTKELGKFTGLRTALILGGDKMEDQFAALHEN 216

Query: 123 ADVLICTP--------GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
            D++I TP           L   +       +  +L      R+ +MGF   +Q I   +
Sbjct: 217 PDIIIATPGRLVHVAVEMNLKLQSVEYAAGMDGPLLTPPLFPRLFEMGFAEQLQEIIGRL 276

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P   QT+LFSAT+   L + +   L  P  I ++  +   E ++  F     + +K   L
Sbjct: 277 PGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSF-FLVREDTKAAVL 335

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L          ++F   K +   L   L  QG S   I+  +DQ +R   L+ F   
Sbjct: 336 LHLLRTVVRPQDQTVVFVATKHHAEYLSELLTTQGVSCTHIYSALDQTARKINLAKFTHN 395

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
               ++ +DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA +++
Sbjct: 396 KCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEV 455

Query: 355 KHIDAIEKLIEKKV 368
            ++  +   + + +
Sbjct: 456 PYLLDLHLFLGRAL 469


>gi|73994645|ref|XP_543405.2| PREDICTED: similar to DEAD-box protein 54 (ATP-dependent RNA
           helicase DP97) isoform 1 [Canis familiaris]
          Length = 884

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 121/374 (32%), Positives = 186/374 (49%), Gaps = 10/374 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  V   ++  GY  PTPIQ KTIP++L   DV  +A+TG+GKTA F++PM   
Sbjct: 98  FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFER 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL PTRELA Q     ++ GK   L  AL++GG   E Q   L   
Sbjct: 158 LKTHSAQTGA-RALILSPTRELALQTMKFTKELGKFTGLRTALILGGDKMEDQFAALHEN 216

Query: 123 ADVLICTP--------GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
            D++I TP           L   +       +  +L      R+ +MGF   +Q I   +
Sbjct: 217 PDIIIATPGRLVHVAVEMNLKLQSVEYAAGMDGPLLTPPLFPRLFEMGFAEQLQEIIGRL 276

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           P   QT+LFSAT+   L + +   L  P  I ++  +   E ++  F     + +K   L
Sbjct: 277 PGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSF-FLVREDTKAAVL 335

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           L  L          ++F   K +   L   L  QG S   I+  +DQ +R   L+ F   
Sbjct: 336 LHLLRTVVRPQDQTVVFVATKHHAEYLSELLTTQGVSCTHIYSALDQTARKINLAKFTHN 395

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
               ++ +DLAARGLDIP + +V N+  P + + ++HR+GR  RAGR G A++LVA +++
Sbjct: 396 KCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEV 455

Query: 355 KHIDAIEKLIEKKV 368
            ++  +   + + +
Sbjct: 456 PYLLDLHLFLGRAL 469


>gi|242096058|ref|XP_002438519.1| hypothetical protein SORBIDRAFT_10g021310 [Sorghum bicolor]
 gi|241916742|gb|EER89886.1| hypothetical protein SORBIDRAFT_10g021310 [Sorghum bicolor]
          Length = 567

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 98/373 (26%), Positives = 179/373 (47%), Gaps = 13/373 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++L +S     A+ +  Y   T IQ ++IP ++   DV G A+TG+GKT +F++P + 
Sbjct: 103 TFSELYISEFTAKAITEMNYTHLTEIQARSIPHLMLGSDVLGSAKTGSGKTLAFLIPAIE 162

Query: 62  ILEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L K     R    +I + PTRELA Q  +  ++  K ++ T+  +IGG     +  ++ 
Sbjct: 163 LLHKACFTPRNGTGVIVVCPTRELAIQTHNVAKELMKYHSQTIGYVIGGTNIRNEANQIV 222

Query: 121 RGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G ++L+ TPGR +    +        ++ L+IDEADR+L+  F   ++ I   +P  RQ
Sbjct: 223 KGINLLVATPGRLLDHLRSTSGFHYKRLQCLIIDEADRILEQNFEEDMKQIFKRLPSDRQ 282

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET----------IEHCFVATYAQYS 229
           T+LFSA  T ++   +       +  +        +            +   V    +  
Sbjct: 283 TVLFSAPQTQKVVDFANFTFGQNEERQRKLVYVGVDDSKLKPTVEGLQQGYCVIPSEKRF 342

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
                  + +Q ++     ++F +   +V      L   G     IHG + Q+ R     
Sbjct: 343 LVLYAFLRRMQLREQGVKIMVFFSSCSSVKFHAELLNFFGIECYDIHGQLKQQKRTSTFF 402

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTL 348
            F +    +++ +++AARGLDIPDV ++  +D P+  ++YIHR+GRT R     G A   
Sbjct: 403 RFLKEKRGILLCTNVAARGLDIPDVDYIVQYDPPDDPKDYIHRVGRTARGDEGKGSALLF 462

Query: 349 VAKEDIKHIDAIE 361
           +  E++K +  ++
Sbjct: 463 LLPEELKLLIYLQ 475


>gi|228907868|ref|ZP_04071720.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           IBL 200]
 gi|228851763|gb|EEM96565.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           IBL 200]
          Length = 389

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 103/367 (28%), Positives = 186/367 (50%), Gaps = 11/367 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P +  A   AG+ + T IQ + IP +L+  DV   + TGTGKT +++LP+L  +      
Sbjct: 7   PFLQEAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI---NPE 63

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           V+ P+ ++L PTREL  Q+ +  +K+     ++ A LIGG   + Q +KL++   V++ +
Sbjct: 64  VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLKKHPRVIVGS 123

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGRIL+     KL M+ ++ +V DE D+++    +  +Q++       RQ + FSATMT 
Sbjct: 124 PGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQLVFFSATMTK 183

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
             +  + +    P+ + V    S +         TY    ++                 +
Sbjct: 184 AAEDAARDLAVEPQLVRVTRAESKSLVE-----HTYIICERREKNDYVRRIMHMGDVKAV 238

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
            F N    +  +   L+ +     A+H    ++ R   +  F+ G +++++A+D+AARG+
Sbjct: 239 AFLNDPFRLDEITQKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGI 298

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE---K 366
           DI D+ HV + ++P+  + YIHR GRTGR G+ G   +LV +++ + +    K +     
Sbjct: 299 DIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERKLLQFAKKLGIVFT 358

Query: 367 KVDWLNG 373
           K +  NG
Sbjct: 359 KQEMFNG 365


>gi|227832522|ref|YP_002834229.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262183610|ref|ZP_06043031.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453538|gb|ACP32291.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 462

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 129/391 (32%), Positives = 202/391 (51%), Gaps = 3/391 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG++ ++  A+ D G  +   IQ  T+P+ L   D+ G A+TG GKT  F +P+L 
Sbjct: 15  TFAELGVAVEICDALADNGITRTFAIQELTLPIALNGQDLIGQARTGMGKTYGFGVPLLD 74

Query: 62  ILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +            PR L++ PTRELA QV+ + E    N  L+V  L GG P+E Q  +
Sbjct: 75  RVFDDADIPELDGTPRALVIAPTRELAIQVSGDLELAAANLPLSVVTLCGGRPYEEQITQ 134

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +E GADV++ TPGR+LD   +  L  +++ +LV+DEAD MLD+GF+P I+ I SL+    
Sbjct: 135 IESGADVVVGTPGRLLDLCQKKHLSFDHVSVLVLDEADEMLDLGFLPDIEKILSLLHGNP 194

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
              +  +                              T       T+  +      +   
Sbjct: 195 HQTMLFSATMPGPIVTLARTFLEKPVHIRAESGDAQHTHSSTRKVTFQAHRMDKIAVLGK 254

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               +     IIF   K++   +   L ++GF V A+HG++DQ++R + L+ F+EGT+++
Sbjct: 255 ALQAEGRGRTIIFTRTKRSAAAVAEELAQRGFRVGAVHGDLDQKARERSLNTFREGTVEI 314

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI DV HV N+ VP+    ++HRIGRTGRAG  G A TLV  +++    
Sbjct: 315 LVATDVAARGIDIEDVTHVINYQVPDDPMTFVHRIGRTGRAGHTGTAVTLVGYDELSKWQ 374

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
            I   ++          S+     E +DI +
Sbjct: 375 VINDELDLGQPEPPQWFSTSPELAEALDIPE 405


>gi|306829191|ref|ZP_07462381.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           mitis ATCC 6249]
 gi|304428277|gb|EFM31367.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           mitis ATCC 6249]
          Length = 454

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 202/452 (44%), Gaps = 43/452 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 8   MSFTKFQFKNYIAEALEELKFETPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 67

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +   +  +
Sbjct: 68  QQLDETSDSVQAV---ITAPSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKARQIDK 124

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 125 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 184

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +          
Sbjct: 185 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYEL- 243

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 244 --TQAMQPYLAMIFVNTKTRADELHTYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 301

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 302 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGIAITLYQPSDDSDI 361

Query: 358 DAIEKL-------------------------IEKKVDWLNGDLSSL---------NPPLE 383
             +EKL                          EKK D L+ ++  L             +
Sbjct: 362 RELEKLGIKFTPKMIKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKKKKVKPGYKK 421

Query: 384 KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           KI  A     RK      ++ G   RK    +
Sbjct: 422 KIQWAVDEKRRKTKRAENRARGRAERKAKRQT 453


>gi|254776598|ref|ZP_05218114.1| RhlE [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 505

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 153/428 (35%), Positives = 222/428 (51%), Gaps = 11/428 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+  ++V A+ + G      IQ  T+PL L   D+ G A+TG GKT +F +P+L  
Sbjct: 12  FAQLGVRDEIVRALDEKGIQHSFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQR 71

Query: 63  LEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKN------YNLTVALLIGGIPFE 113
           +  G A       PR L++ PTREL  QV D+     K+        L+V  + GG P+E
Sbjct: 72  ITAGTAPRALNGTPRALVVVPTRELCLQVTDDLTLAAKHLTADGGRPLSVVPIYGGRPYE 131

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+P I+ I   
Sbjct: 132 PQIDALRAGADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQ 191

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ++LFSATM D +  ++  F+  P  I    P S A           A    K  
Sbjct: 192 IPDDRQSMLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQYVYRAHALDKVE 251

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L+ ++LQ++      I     K+    +   L ++GF V A+HG++ Q +R K L  F+ 
Sbjct: 252 LVSRVLQAESRGATMIFT-RTKRTAQKVADELAERGFKVGAVHGDLGQVAREKALKAFRT 310

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I ++VA+D+AARG+DI DV HV N+ +P   + Y+HRIGRTGRAG+ G A TLV  ++
Sbjct: 311 GDIDVLVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKAGVAVTLVDWDE 370

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI-AQHNHARKNNPIPQKSTGFDRRKKN 412
           +     I+K +   V       S+     E++ I A           PQ       R   
Sbjct: 371 LARWALIDKALGLDVPEPAETYSNSPHLYEELGIPAGAGGRVGAARKPQGPRRSAERATA 430

Query: 413 YSSQKSHI 420
              QKS  
Sbjct: 431 KPDQKSET 438


>gi|254671737|emb|CBA09550.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha153]
          Length = 399

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 134/360 (37%), Positives = 201/360 (55%), Gaps = 9/360 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADL L   ++ AV   GY  PTPIQ + IP  L+  D+   AQTG+GKTA+F+LP L
Sbjct: 3   IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIMASAQTGSGKTAAFLLPTL 62

Query: 61  TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118
             L K   +  + PR L+L PTRELAAQV  N   Y KN        ++GG  F  Q + 
Sbjct: 63  QKLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +  D+++ TPGR++D    GK+    +E+L++DEADRMLDMGFI  I+ I    P  R
Sbjct: 123 LSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT    + K++    ++P+ IEV       +  E        ++  +       
Sbjct: 183 QTLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRL---LDH 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +     +   +IF + K     +   L ++GF+   +HG++ Q  R + L + ++G  ++
Sbjct: 240 ILRDADIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG--RTGRAGRHGKAFTLVAKEDIKH 356
           +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIG  R+GR   HG        E I+ 
Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGPYRSGRT--HGYCDYFCRSERIRQ 357


>gi|188533798|ref|YP_001907595.1| ATP-dependent RNA helicase DbpA [Erwinia tasmaniensis Et1/99]
 gi|188028840|emb|CAO96702.1| ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99]
          Length = 459

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 127/384 (33%), Positives = 205/384 (53%), Gaps = 11/384 (2%)

Query: 3   FADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY+  TP+Q  ++P +L+  DV   A+TG+GKTA+F L ++ 
Sbjct: 4   FSTLTQLPASQIDNLNELGYLAMTPVQAASLPAILEGRDVRAQAKTGSGKTAAFGLGVMH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++  +    + + L+L PTRELA QV     +  +       L + G  P  AQ   L 
Sbjct: 64  RVDASQ---YVTQALVLCPTRELADQVTKELRRLARFTANIKILTLCGGQPVGAQRDSLL 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILDH  R  L ++ I  LV+DEADRML+MGF   I  I S  P  RQT
Sbjct: 121 HAPHIVVGTPGRILDHLKRETLKLDAITTLVLDEADRMLEMGFREDIDMIISHSPQQRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    +        Q  +R  +   +     +       Y   +++       L 
Sbjct: 181 LLFSATWPQAIAH----ISQKIQRDPLTVETGDVSDLPAIEQTFYEAGAREKLTALIGLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+    + ++FCN K+   ++ ++LE    S   +HG+++QR R ++L  F  G+ +++V
Sbjct: 237 SERQPASCVVFCNTKRECDDIAYALENAQISAQPLHGDLEQRDRDQMLIRFANGSCRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+ +    E ++HRIGRT RAG+ G A +LVA +++    A+
Sbjct: 297 ATDVAARGLDIKALSMVVNYQLSFDPEVHVHRIGRTARAGQEGCAVSLVAPDEMIRAHAL 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384
           E  +++K+ W    +S+L   + K
Sbjct: 357 EDYLQQKLAWSP--VSTLKSAVSK 378


>gi|195108879|ref|XP_001999020.1| GI23306 [Drosophila mojavensis]
 gi|193915614|gb|EDW14481.1| GI23306 [Drosophila mojavensis]
          Length = 702

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 123/379 (32%), Positives = 210/379 (55%), Gaps = 5/379 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           FA+    P ++  +   G+ KP+PIQ +  P++LQ HD+ GIAQTGTGKT +F+LP M+ 
Sbjct: 293 FAEY---PDLLAEIQKQGFTKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIH 349

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI-PFEAQNKKLE 120
              +   R       +L         +    E    ++    A+ + G    + Q   +E
Sbjct: 350 TEYQSTPRGTRGGANVLVLAPTRELALQIEMEVKKYSFRNMKAVCVYGGGSRKMQISDVE 409

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RGA+++ICTPGR+ D    G + +++I  LV+DEADRMLDMGF P I+ +   +   RQT
Sbjct: 410 RGAEIIICTPGRLNDLVQAGVINISSITYLVLDEADRMLDMGFEPQIRKVLLDIRPDRQT 469

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT    ++++++++++NP ++ V +    A       +        K  +L++ ++
Sbjct: 470 IMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIELLQDDKDKFHVLRKFVE 529

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       I+FC +K    +L   L   GFS   IHGN +Q  R + +++ K G +++++
Sbjct: 530 NMTKSDKIIVFCGRKARADDLSSDLSLSGFSTQCIHGNREQCDREQAIADIKSGLVRILI 589

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+A+RGLDI D+ HV N+D P   E Y+HR+GRTGRAGR G + + V +ED      +
Sbjct: 590 ATDVASRGLDIEDISHVINYDFPRNIEEYVHRVGRTGRAGRRGTSISFVTREDWAMAKEL 649

Query: 361 EKLIEKKVDWLNGDLSSLN 379
             ++E+    +  +L  ++
Sbjct: 650 IDILEEAQQDVPEELRRMS 668


>gi|308178316|ref|YP_003917722.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
 gi|307745779|emb|CBT76751.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
           Re117]
          Length = 515

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 129/431 (29%), Positives = 205/431 (47%), Gaps = 19/431 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LG+   +   + D+G     PIQ  T+P  L   DV G  QTG+GKT +F LP++
Sbjct: 3   VTFSALGVPEYLAKVLADSGIESAFPIQEATLPSTLAGGDVLGRGQTGSGKTLAFSLPLV 62

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                   R + R PR LI+ PTRELA Q+A   E   K   L   ++ GG+    Q K 
Sbjct: 63  ARLADRPQRRKARFPRALIMAPTRELATQIAKTVEPLAKAAGLRTTVIYGGVAQSRQEKA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           +  GAD++I  PGR+ D   +  + ++ +EI V+DEAD M DMGF+P ++ I   +P   
Sbjct: 123 MNEGADIVIACPGRLDDLIKQKIVDLSQLEISVLDEADHMADMGFLPVVRRIMDRMPTGI 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT+ + + KV++ +L +P    V+ P +   T+EH          K    +   
Sbjct: 183 QHMLFSATLDNGVDKVAKRYLSHPTIHSVDAPKAAVNTMEHHVFVISNDDKKDLIRVLAQ 242

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     I+F   K +   +  +L K G     +HGN+ Q +R + L+ F  G  ++
Sbjct: 243 GT-----ARRIMFMRTKHHAKKMALTLSKAGVPAVDLHGNLSQNARDRNLAAFASGEAKV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+ +  V  V + D P   + Y HR GRT RAG  G   T+   +    + 
Sbjct: 298 LVATDVAARGVHVDGVELVVHVDPPAEHKAYTHRSGRTARAGSDGTVVTICTPDQQGDVS 357

Query: 359 AIEKLIEKKVDW------------LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
            + K    KV +            + G+++ L P +      ++   +K       + G 
Sbjct: 358 TLLKQAGLKVPFEKVNLNSPVVAKVVGEVAELVPYVAPAQQTRNPAKKKPAGESSNARGG 417

Query: 407 DRRKKNYSSQK 417
               +N    K
Sbjct: 418 RGGARNARGGK 428


>gi|217972736|ref|YP_002357487.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217497871|gb|ACK46064.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 427

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 143/422 (33%), Positives = 215/422 (50%), Gaps = 24/422 (5%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI-- 62
            LG+   ++  + +  YV PTP+Q  TIP VL   DV   A TG+GKTA+F +P+L    
Sbjct: 13  QLGIIAPLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLV 72

Query: 63  -LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNKKL 119
             +         R L+L PTRELA QVAD+F  Y  + N    +    GG+   AQ + L
Sbjct: 73  EAKTDDKTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQSL 132

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GADVL+ TPGR+LD  +   + +N +  LV+DEADRML +GF   +  +   +P  +Q
Sbjct: 133 RAGADVLVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQ 192

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +E+++++   L +P   +  +     E                   L   L
Sbjct: 193 TLLFSATFPEEVRELTAKLLNDPLEYQFQS-----EQESTIHQRVITVNRPMKTALLAHL 247

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      +IF + K    +L   L K+G S    HG+  Q +R ++L  FK G I ++
Sbjct: 248 IKEHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVL 307

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI  +  V NFD+P    +Y+HRIGR+GRAG  G A TL++ ED  H   
Sbjct: 308 IATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGV 367

Query: 360 IE-----KLIEKKV------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           IE     KL+ +++      D +  +L     P+ K +       +K   +P  +  F  
Sbjct: 368 IEKKNKLKLVREQIVGFEADDEMPAELLEQAKPVAKPEGM---GKKKRKQLPSANAEFWG 424

Query: 409 RK 410
           +K
Sbjct: 425 KK 426


>gi|145517995|ref|XP_001444875.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412308|emb|CAK77478.1| unnamed protein product [Paramecium tetraurelia]
          Length = 813

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 181/379 (47%), Gaps = 12/379 (3%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L  +    ++      PTPIQ    PL+L+  DV  IA+TG+GKT ++ LP   I  + +
Sbjct: 439 LPAEYQQILISKKITTPTPIQKAIFPLILEGRDVIAIAETGSGKTLAYALP-GIIHSQAQ 497

Query: 68  ARVRMPRTLILEPTRELAAQVADNFE-----KYGKNYNLTVALLIGGIPFEAQNKKLERG 122
            +V  PR L+L PTRELA Q+   +E                     +  +    K+   
Sbjct: 498 PKVLGPRILVLAPTRELAQQIQSQYELFTRTCCVYGGVFKNLQYSEILGIKESRNKINLP 557

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + ++      +    +   L       +V+DEADRMLDMGF   I  I S V   RQTL 
Sbjct: 558 SVIISTPGRLLDFMKDGLPLNSITQ--VVLDEADRMLDMGFEDQITQILSAVRDDRQTLF 615

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT  +E+Q+++ +       +        +              +K     +     +
Sbjct: 616 FSATWPNEVQRLANSLCNQDPIMIQLGEQGLSVNKNIQQEVIIVYENKFEKFAEL--TDR 673

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
              +  +IFC +K +   L + L   G     +HG++ Q  R +I+  FK G I  ++ +
Sbjct: 674 LKGQKLLIFCQKKLDTQKLEYRLSIHGLKARYLHGDLKQAERDQIMVEFKSGAINCLITT 733

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE--DIKHIDAI 360
           +LA+RGLD+ DV  V N+D P+  E+YIHRIGRTGRAG+ G+A +L+     + +  + +
Sbjct: 734 NLASRGLDVSDVDVVINYDFPDTIEDYIHRIGRTGRAGKKGQAISLLEPAFFNNRLKNDL 793

Query: 361 EKLIEKKVDWLNGDLSSLN 379
            +++++    +  +LSSL 
Sbjct: 794 VQVLQQSDQVIPQELSSLR 812


>gi|300798295|ref|NP_001179318.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Bos taurus]
 gi|297484475|ref|XP_002694322.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 59-like [Bos
           taurus]
 gi|296478913|gb|DAA21028.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59-like [Bos taurus]
          Length = 620

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 116/406 (28%), Positives = 194/406 (47%), Gaps = 12/406 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF   G    +   +  +GY  PTPIQ++ IP+ L   DV   A TG+GKTA+F+LP+ 
Sbjct: 204 VDFEHCGFPEALNRNLKASGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPV- 262

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKL 119
             + +  ++ + P  L+L PTRELA Q+    ++          ALL+GG+P   Q  +L
Sbjct: 263 --ILRALSQSKSPSGLVLTPTRELAIQIERQAKELMSGLPCLRTALLVGGLPAPPQRHRL 320

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   V+I TPGR+LD   +  + + +I+I+V+DEAD ML MGF   + ++   +P   Q
Sbjct: 321 RQRIQVIIATPGRLLDIIKQRSVELGSIKIVVVDEADTMLKMGFQQQVLDVLEQLPHDCQ 380

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+L SAT+   +++++   L++P  I     +    ++    +       KK        
Sbjct: 381 TVLASATIPASVEQLACQLLRDPVAITAGERNLPCPSVRQIVLWVEEPAKKKKLFEILND 440

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +    +    +      +  G    ++H +  Q  R  IL    EG   ++
Sbjct: 441 KKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSTSVHSDKTQMERKNILKGLLEGDYDVV 500

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +  RGLD+  V  V NFD+P+  + Y+H+IGR GR G+HG A T +     +    
Sbjct: 501 VSTGVLGRGLDLVGVKLVVNFDMPSSMDEYVHQIGRVGRLGQHGTAITFINNNSKRLFWD 560

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           I K ++     L   L  LN P        H+  RK     +++  
Sbjct: 561 IAKRVKPTGSLLPPQL--LNSP------YLHDQKRKEQQKDRQTQD 598


>gi|261335430|emb|CBH18424.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 556

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 90/435 (20%), Positives = 169/435 (38%), Gaps = 24/435 (5%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           L L   ++  + +  +  PTPIQ++TIP ++Q  DV   A TG+GKT +F++PM   L K
Sbjct: 136 LSLDECLISNLFERNHRIPTPIQMQTIPCLVQGRDVLACAPTGSGKTVAFLIPMFARLGK 195

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
              R    R LI+ PT ELA Q+        K     +         +       +   +
Sbjct: 196 PD-RDAGVRALIITPTMELAEQIEREAFFLLKGKRWKL--------VQHGQTTRNKDIFI 246

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
                   L       L      +    +         +  +  + +   +  + +    
Sbjct: 247 TTPGRVSTLLERKLVDLSNIQYLVFDEGDRLWDSSTDNLRVMDIVLTACTYKEKVVALFT 306

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
               E  + +   +  P  + +                 +        +  + +  +   
Sbjct: 307 ATLSEKIEAAARSVMGPDPVRIIVSGRAKANKNVKQELVFCGNELGKVVAIRNIVREGVT 366

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
              +IF    +    L   ++ QG  +  ++  +    R + + NF+ G I ++V ++L 
Sbjct: 367 PPVLIFVQSIERTKELHEEIQCQGLRIAIMNAKMTHEERDETMMNFRLGKIWVLVTTELL 426

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           +RG+D  +VG V NFD+P   E+YIHR+GR GRAG+ GKA T   ++D   I  I ++++
Sbjct: 427 SRGIDFKNVGTVINFDIPTTVESYIHRVGRCGRAGKTGKAITFFTEDDKHRIPPIARVMK 486

Query: 366 KKVDWLNGDLSSLNPPLEK--IDIAQHNHARKN--NPIPQKSTGFDRRKKNYSSQKSHIP 421
           +              P+E   ++I  H   R+      P +     R++   + Q+    
Sbjct: 487 ES-----------GSPIEDWMLEIKTHRSVRRRLQRTTPHRMIVSTRKRMLVADQRMKRQ 535

Query: 422 LKESEKISKLQQDIQ 436
           L+  E  +  +   Q
Sbjct: 536 LRRLEYENAQKAGGQ 550


>gi|322391023|ref|ZP_08064527.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           parasanguinis ATCC 903]
 gi|321142253|gb|EFX37727.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           parasanguinis ATCC 903]
          Length = 453

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 183/366 (50%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +    P +  A+ +  + + T +Q K IP+VL  +D+ G ++TG+GKT +F+LP+ 
Sbjct: 7   MKFTEFNFKPYIQEALKEINFREATEVQEKLIPIVLAGNDLVGESKTGSGKTHTFLLPIF 66

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-- 118
             L +   +V      I  P+RELA Q+     +   +    + ++      +   +   
Sbjct: 67  QTLNEDSQQVEAV---ITAPSRELATQIYQAARQIASHSEKEIRIVNYVGGTDKSRQIEK 123

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              +   ++I TPGRI D    G L ++     V+DEAD  LDMGF+  +  I S +P  
Sbjct: 124 LQVKQPHIVIGTPGRIYDLVASGDLAIHKAHTFVVDEADMTLDMGFLSTVDKIASSLPQQ 183

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  ++TI++  V+T  +   +      
Sbjct: 184 LQFLVFSATIPQKLQPFLKKYLSNPVMEQIKTKTVISDTIDNWLVSTKGRDKNEQIYQL- 242

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K    +L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 243 --TKTLQPYLAMIFVNTKTRADDLHAYLVAQGLKVAKIHGDIPPRERKRIMNQVKNLDFE 300

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 301 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGVAITLYQPSDDSDI 360

Query: 358 DAIEKL 363
             +EK+
Sbjct: 361 RELEKM 366


>gi|306832864|ref|ZP_07465998.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           bovis ATCC 700338]
 gi|304425003|gb|EFM28135.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           bovis ATCC 700338]
          Length = 447

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 117/382 (30%), Positives = 182/382 (47%), Gaps = 11/382 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D    P +  A+ +  +  PT +Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFNDFNFKPYIREALAELKFTNPTEVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNK 117
             L++    V++    I  P+RELA Q+    ++  +     + ++             K
Sbjct: 61  EKLDENSNNVQVV---ITAPSRELATQIYQATKQIAEKSETEIRVVNYVGGTDKLRQIEK 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L +      V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LKSSQPHIVIGTPGRIYDLVKSGDLEIYKAHTFVVDEADMTLDMGFLDTVDKIAGTLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVMEKIKTTTVIADTI---DNWLVSTKGRDKNAQIL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K+    L   L   G  V  IHG+I  R R + ++  K+ + +
Sbjct: 235 EITKALNPYLAMIFVNTKERADELHSYLVSNGLKVAKIHGDIPPRERKRTMNQIKKLSYE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR   +G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNDLNGIAITLYKPSDDSDI 354

Query: 358 DAIEKLIEKKVDWL--NGDLSS 377
             +EK+  K V  +  NG+   
Sbjct: 355 RELEKMGIKFVPKMLKNGEFQD 376


>gi|302665674|ref|XP_003024446.1| hypothetical protein TRV_01409 [Trichophyton verrucosum HKI 0517]
 gi|291188499|gb|EFE43835.1| hypothetical protein TRV_01409 [Trichophyton verrucosum HKI 0517]
          Length = 940

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 124/406 (30%), Positives = 199/406 (49%), Gaps = 41/406 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+P ++ A+   G+  PTPIQ KTIPL+L   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 94  FQAMGLNPTLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 153

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 154 LRNHSTKVGA-RGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMASN 212

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I   V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 213 PDIIIATPGRFLHLKVEMNLDLSSIRYAVFDEADRLFEMGFAAQLTEILHALPTSRQTLL 272

Query: 183 FSATMTDELQKV----------------------------------------SENFLQNP 202
           FSAT+   L +                                                 
Sbjct: 273 FSATLPKSLVEFARAGLQEPTLIRLDADSKISPDLQSAFFTVKSADKEGALLHILHDLIK 332

Query: 203 KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLC 262
                      A+          ++  K+  +         T  + I+F   K +V  + 
Sbjct: 333 IPTGETEAGKLAKKEAQEGKQGTSKKRKRADMKGPGAHGTPTEHSTIVFVATKHHVEYIA 392

Query: 263 HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322
           + L   GF+V   +G+++Q +R   + N + G   ++V +D+AARG+DIP + +V N+D 
Sbjct: 393 NLLRHSGFAVSYAYGSLNQTARKIQVQNLRAGISNILVVTDVAARGIDIPVLANVINYDF 452

Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           P++ + YIHR+GRT RAG+ G +++LV   D  ++  ++  + +++
Sbjct: 453 PSQPKIYIHRVGRTARAGQKGWSYSLVRDSDAPYLIDLQLFLGRRL 498


>gi|242809318|ref|XP_002485344.1| ATP dependent RNA helicase (Sub2), putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218715969|gb|EED15391.1| ATP dependent RNA helicase (Sub2), putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 444

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 95/373 (25%), Positives = 165/373 (44%), Gaps = 5/373 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++ A+ D G+  P+ +Q   IP  +   D+   A++G GKTA FVL  L  
Sbjct: 63  FRDFLLKTELLRAITDCGFEHPSEVQQVCIPQGMLHSDLLCQAKSGLGKTAVFVLTTLHG 122

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+     V++       E   ++  + A   +   +                      E 
Sbjct: 123 LDPVEGEVQVLVMCHTRELAYQIKNEYARFSKYLPQVKTAVFYGGTPMQKDIEILSNKET 182

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFIPYIQNITSLVPFTRQT 180
             ++++ TPGR+       KL + N++  V+DE D+M   +     +Q I    P  +Q 
Sbjct: 183 RPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRNTPAEKQV 242

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ E++ + + F++NP  + V+  +         +    ++  K        L 
Sbjct: 243 MMFSATLSQEVRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEQEKNR--KLSDLL 300

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF         L   L +  F   A+H  + Q  R+K    FKE   ++ V
Sbjct: 301 DNLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICV 360

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           A+D+  RG+DI  +    N+D+P  A++Y+HR+GR GR G  G + + V ++ED K +  
Sbjct: 361 ATDVFGRGIDIERINLAINYDLPGDADSYLHRVGRAGRFGTKGLSISFVSSEEDEKVLKE 420

Query: 360 IEKLIEKKVDWLN 372
           IEK  E  +    
Sbjct: 421 IEKRFEVALPEYP 433


>gi|148707600|gb|EDL39547.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Mus musculus]
          Length = 619

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 118/420 (28%), Positives = 197/420 (46%), Gaps = 6/420 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF   G    +   +  +GY  PTPIQ++ IP+ L   D+   A TG+GKTA+F+LP+ 
Sbjct: 203 IDFEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPV- 261

Query: 61  TILEKGRARVRMPRTLILEPTRE-LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +  +  + P  LIL PTRE          E       +   LL+GG+P   Q  +L
Sbjct: 262 --IIRAFSEDKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRL 319

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   V+I TPGR+LD   +  + ++ I+I+V+DEAD ML MGF   + ++    P   Q
Sbjct: 320 RQHVKVIIATPGRLLDIIKQSSVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPGDCQ 379

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+L SAT+ D ++++++  L NP RI     +    ++    +       KK        
Sbjct: 380 TILVSATIPDSIEQLTDQLLHNPVRIITGDKNLPCASVRQIILWVEDPAKKKKLFEILND 439

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q        +    +    +      +  G +  +IH    Q  R  IL    EG  +++
Sbjct: 440 QKLFKPPVLVFVDCKLGADLLSEAVQKITGLNSTSIHSEKSQVERRDILKGLLEGDYEVV 499

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +  RGLD+ +V  V NFD+P+  + Y+H++GR GR G++G A T +     +    
Sbjct: 500 VSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWD 559

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD--RRKKNYSSQK 417
           + K ++     L   L +     E+    Q    +  N +   +   D  R+ +  SSQK
Sbjct: 560 VAKRVKPTGSILPPQLLNSPYLHEQKRKEQQKDRQTQNSLVTGANLMDIIRKHEKSSSQK 619


>gi|119469744|ref|ZP_01612613.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Alteromonadales bacterium TW-7]
 gi|119446991|gb|EAW28262.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Alteromonadales bacterium TW-7]
          Length = 435

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 137/369 (37%), Positives = 211/369 (57%), Gaps = 13/369 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL P++   + D  Y +PTPIQ K IP VL   D+   A TG+GKTA+F LPML 
Sbjct: 9   TFNELGLIPELQARLTDLEYSQPTPIQAKAIPSVLAGSDLIAGANTGSGKTATFALPMLQ 68

Query: 62  ILEKGR------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113
            L   +      ++      LIL PTRELA QVAD+ + Y  N+N  +    + GG+   
Sbjct: 69  KLFLEQGAKKTASKGNFVTGLILVPTRELATQVADSVKSYSANFNGAIKTVAVFGGVSVN 128

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q + L  GAD+++ TPGR+LD  +   + ++ +  LV+DEADRML +GF   +  + +L
Sbjct: 129 TQMQALRGGADIIVATPGRLLDLISSNAIKLDKVTTLVLDEADRMLSLGFTEELAELLAL 188

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  +QT+LFSAT  +++ ++++  L NP  I+V +   +        V    + +    
Sbjct: 189 MPAKKQTMLFSATFPEQVTQLTQKLLTNPVEIQVQSKDESTLVQRVFTVNKGEKTTVLAH 248

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L+++        +  +IF N KK+  +L   LEK+G +    HG+  Q  R +++  FK 
Sbjct: 249 LIKEHKW-----RQALIFVNAKKDCEHLAGKLEKRGINAQVFHGDKGQSERTRVIEKFKA 303

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I++++A+D+AARGLDI  +  V NF++P    +Y+HRIGR+GRAG  G A +L+  ED
Sbjct: 304 GEIEVLIATDIAARGLDIAKLPVVINFNLPRSPADYMHRIGRSGRAGEVGLALSLIDYED 363

Query: 354 IKHIDAIEK 362
             H   IEK
Sbjct: 364 FHHFKIIEK 372


>gi|91210637|ref|YP_540623.1| ATP-dependent RNA helicase DbpA [Escherichia coli UTI89]
 gi|117623595|ref|YP_852508.1| ATP-dependent RNA helicase DbpA [Escherichia coli APEC O1]
 gi|218558330|ref|YP_002391243.1| ATP-dependent RNA helicase DbpA [Escherichia coli S88]
 gi|237705373|ref|ZP_04535854.1| ATP-independent RNA helicase DbpA [Escherichia sp. 3_2_53FAA]
 gi|91072211|gb|ABE07092.1| ATP-independent RNA helicase DbpA [Escherichia coli UTI89]
 gi|115512719|gb|ABJ00794.1| ATP-independent RNA helicase DbpA [Escherichia coli APEC O1]
 gi|218365099|emb|CAR02806.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           S88]
 gi|226900130|gb|EEH86389.1| ATP-independent RNA helicase DbpA [Escherichia sp. 3_2_53FAA]
 gi|294490917|gb|ADE89673.1| ATP-independent RNA helicase DbpA [Escherichia coli IHE3034]
 gi|307627083|gb|ADN71387.1| ATP-dependent RNA helicase DbpA [Escherichia coli UM146]
 gi|323949054|gb|EGB44946.1| DEAD/DEAH box helicase [Escherichia coli H252]
 gi|323956904|gb|EGB52636.1| DEAD/DEAH box helicase [Escherichia coli H263]
          Length = 457

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 207/383 (54%), Gaps = 9/383 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQDAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+  ++C  L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQSVCDVLNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383
             +++ K++W     +S   PLE
Sbjct: 357 SDMLQIKLNWQTLPANSSIVPLE 379


>gi|74227490|dbj|BAE21808.1| unnamed protein product [Mus musculus]
          Length = 619

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 118/420 (28%), Positives = 197/420 (46%), Gaps = 6/420 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF   G    +   +  +GY  PTPIQ++ IP+ L   D+   A TG+GKTA+F+LP+ 
Sbjct: 203 IDFEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPV- 261

Query: 61  TILEKGRARVRMPRTLILEPTRE-LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +  +  + P  LIL PTRE          E       +   LL+GG+P   Q  +L
Sbjct: 262 --IIRAFSEDKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRL 319

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   V+I TPGR+LD   +  + ++ I+I+V+DEAD ML MGF   + ++    P   Q
Sbjct: 320 RQHVKVIIATPGRLLDIIKQSSVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPGDCQ 379

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+L SAT+ D ++++++  L NP RI     +    ++    +       KK        
Sbjct: 380 TILVSATIPDSIEQLTDQLLHNPVRIITGDKNLPCASVRQIILWVEDPAKKKKLFEILND 439

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q        +    +    +      +  G +  +IH    Q  R  IL    EG  +++
Sbjct: 440 QKLFKPPVLVFVDCKLGADLLSEAVQKITGLNSTSIHSEKSQVERRDILKGLLEGDYEVV 499

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +  RGLD+ +V  V NFD+P+  + Y+H++GR GR G++G A T +     +    
Sbjct: 500 VSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWD 559

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD--RRKKNYSSQK 417
           + K ++     L   L +     E+    Q    +  N +   +   D  R+ +  SSQK
Sbjct: 560 VAKRVKPTGSILPPQLLNSPYLHEQKRKEQQKDRQTQNSLVTGANLMDIIRKHEKSSSQK 619


>gi|13385988|ref|NP_080776.1| probable ATP-dependent RNA helicase DDX59 [Mus musculus]
 gi|81917187|sp|Q9DBN9|DDX59_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX59; AltName:
           Full=DEAD box protein 59
 gi|12836314|dbj|BAB23601.1| unnamed protein product [Mus musculus]
 gi|23272229|gb|AAH23840.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Mus musculus]
          Length = 619

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 118/420 (28%), Positives = 197/420 (46%), Gaps = 6/420 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF   G    +   +  +GY  PTPIQ++ IP+ L   D+   A TG+GKTA+F+LP+ 
Sbjct: 203 IDFEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPV- 261

Query: 61  TILEKGRARVRMPRTLILEPTRE-LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +  +  + P  LIL PTRE          E       +   LL+GG+P   Q  +L
Sbjct: 262 --IIRAFSEDKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRL 319

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   V+I TPGR+LD   +  + ++ I+I+V+DEAD ML MGF   + ++    P   Q
Sbjct: 320 RQHVKVIIATPGRLLDIIKQSSVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPGDCQ 379

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+L SAT+ D ++++++  L NP RI     +    ++    +       KK        
Sbjct: 380 TILVSATIPDSIEQLTDQLLHNPVRIITGDKNLPCASVRQIILWVEDPAKKKKLFEILND 439

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q        +    +    +      +  G +  +IH    Q  R  IL    EG  +++
Sbjct: 440 QKLFKPPVLVFVDCKLGADLLSEAVQKITGLNSTSIHSEKSQVERRDILKGLLEGDYEVV 499

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +  RGLD+ +V  V NFD+P+  + Y+H++GR GR G++G A T +     +    
Sbjct: 500 VSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWD 559

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD--RRKKNYSSQK 417
           + K ++     L   L +     E+    Q    +  N +   +   D  R+ +  SSQK
Sbjct: 560 VAKRVKPTGSILPPQLLNSPYLHEQKRKEQQKDRQTQNSLVTGANLMDIIRKHEKSSSQK 619


>gi|224128704|ref|XP_002320399.1| predicted protein [Populus trichocarpa]
 gi|222861172|gb|EEE98714.1| predicted protein [Populus trichocarpa]
          Length = 524

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 103/419 (24%), Positives = 203/419 (48%), Gaps = 22/419 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+   L  K++  +   GY  PTPIQ++ I   L    +   A TG+GKTASF++P++
Sbjct: 124 LSFSSCNLPEKLLHNIQTLGYDMPTPIQMQGIAAALTGKSLLASADTGSGKTASFLVPVV 183

Query: 61  TIL----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +          ++ + P  ++L PTREL  QV +  +  GK      AL+IGG     Q 
Sbjct: 184 SRCATFRHGNISKSKKPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVIGGDAMPRQL 243

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            ++++G ++++ TPGR++D   +  + +++I ILV+DE D ML  GF   +         
Sbjct: 244 YRIQQGVELIVGTPGRLIDLLAKHDIELDDIMILVLDEVDCMLQQGFRDQV-MQIFRALS 302

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q L++SATM+ E++K++ +  ++   + +  P+  ++ ++   +   ++  K+     
Sbjct: 303 QPQVLMYSATMSQEVEKMASSMAKDLIFVSIGQPNRPSKAVKQLAIWVESKQKKQKLFDI 362

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            + +      + +   ++    +         G    +IHG    + R +I+ +F  G +
Sbjct: 363 LMSKQHFLPPSIVYVGSRIGADLLSNAITVTTGLKALSIHGEKSMKERREIMKSFLVGEV 422

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L+VA+ +  RG+D+  V  V  FD+PN  + Y+H+IGR  R G  G +   V +E+   
Sbjct: 423 PLVVATGVLGRGVDLLGVRQVIVFDMPNCIKEYVHQIGRASRMGEDGTSIVFVNEENRNL 482

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
              + ++++     +  +L +              + +++ P+     G  +RK+ Y S
Sbjct: 483 FPDLVEVLKSSGAVIPRELVN------------SRYVKRSFPM-----GKGQRKRKYGS 524


>gi|114675747|ref|XP_001171771.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 isoform 4 [Pan
           troglodytes]
 gi|114675749|ref|XP_001171735.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 isoform 2 [Pan
           troglodytes]
 gi|114675751|ref|XP_001171721.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 isoform 1 [Pan
           troglodytes]
 gi|114675753|ref|XP_512441.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 isoform 7 [Pan
           troglodytes]
 gi|114675757|ref|XP_001171749.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 isoform 3 [Pan
           troglodytes]
          Length = 416

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 88/375 (23%), Positives = 149/375 (39%), Gaps = 14/375 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 46  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V          T     +  + F KY  +  ++V      I  + +  K    
Sbjct: 106 IEPVNGQVVEAAVCYDHTTALQPGKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    NR   L N    ++                  +   +  +     
Sbjct: 166 HVVVGTPGRILALVRNRSFSLKNVKHFVL-------------DECDKMLEQLGESSALAA 212

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            + +   E+     + L   + +EV     T  T+             +       L   
Sbjct: 213 PAESQCPEVIPARPSHLSPTQPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDV 272

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 273 LEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 332

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ E D K ++ ++
Sbjct: 333 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 392

Query: 362 KLIEKKVDWLNGDLS 376
              E  V  L  ++ 
Sbjct: 393 DRFEVNVAELPEEID 407


>gi|54026546|ref|YP_120788.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
 gi|54018054|dbj|BAD59424.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
          Length = 1148

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 148/417 (35%), Positives = 223/417 (53%), Gaps = 22/417 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+  ++V A+ + G  +   IQ  T+PL L   D+ G A+TG GKT  F +P+L 
Sbjct: 36  TFAELGVRDEIVRALAEIGIERTFAIQELTLPLALAGEDLIGQARTGMGKTFGFGVPLLH 95

Query: 62  ILEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNL-----TVALLIGGIPF 112
            +    +        PR L++ PTREL  QV D+  + GK          V  + GG P+
Sbjct: 96  RIATADSGTTPLDGTPRALVIVPTRELCIQVTDDLVRAGKYLRNHKGALKVTAIYGGRPY 155

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           ++Q   L  G DV++ TPGR+LD   +  L++  I +LV+DEAD MLD+GF+P I+ I +
Sbjct: 156 DSQIAALREGVDVVVGTPGRLLDLAKQNHLILGKIGVLVLDEADEMLDLGFLPDIERILT 215

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           +VP  RQT+LFSATM   +  ++  FL  P  I    P  +A           A    K 
Sbjct: 216 MVPAKRQTMLFSATMPGPIITLARTFLTRPTHIRAEEPHDSAVHDRTAQFVYRAHALDKA 275

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L+ ++LQ++      I     K+    +   L ++GF+V A+HG++ Q  R K L  F+
Sbjct: 276 ELIARVLQAEGRGATMIFT-RTKRTAQKVADDLAERGFAVGAVHGDLGQVQREKALDKFR 334

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           +G I ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G A TL+  +
Sbjct: 335 KGVIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGVAVTLIDWD 394

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           ++    AI+  +   +            P+E    + H  +  +  IP+  TG  RR
Sbjct: 395 ELNRWAAIDAALGLGIPE----------PVETYSRSPHLFS--DLGIPEGVTGTVRR 439


>gi|71651136|ref|XP_814251.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70879209|gb|EAN92400.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 861

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 126/375 (33%), Positives = 195/375 (52%), Gaps = 9/375 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   V+  VL  GY  PTPIQ K IP ++Q  DV  +A+TG+GKTA+F++PML +
Sbjct: 67  FQSLGLEKPVLDGVLRLGYNVPTPIQRKAIPPMIQGSDVVAMARTGSGKTAAFLVPMLNL 126

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  ++    R L+L PTREL+ Q+     +  K  +L  A L+GG   E Q + L   
Sbjct: 127 L-KSHSKTVGIRGLVLAPTRELSLQILRFGIQLNKFLDLRFAALVGGNSLEQQFELLGSN 185

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+L       L ++ ++ LV+DEADR+ ++G  P I  +   VP   Q  L
Sbjct: 186 PDIVVATPGRLLHIMEEASLKLSMVKCLVLDEADRLFELGLQPQIVAVMQKVPDACQRAL 245

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS--------KKCAL 234
           FSATM   L + +   L NP  I ++     ++ ++                   KK   
Sbjct: 246 FSATMPSVLAEFTSAGLHNPVVIRLDAEMKLSDKLKQSAFFVRNDEKVAALIVLLKKVIG 305

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +     S  T +  +IF   K +V  L   +E    S  A+HG +DQ +R   +  F   
Sbjct: 306 VAAGDTSDGTAQQALIFVESKFHVDYLQMIMEAYLISCSAVHGQMDQEARRNAVQAFSRR 365

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
              +M+ +D+AARGLD+P + +V NF  P+  + ++HR+GR  RAGR G A++ +  ED 
Sbjct: 366 ETHVMIVTDVAARGLDLPLLDNVVNFSFPSTPKLFVHRVGRVARAGRSGAAYSFLTFEDF 425

Query: 355 KHIDAIEKLIEKKVD 369
            +   +   I++ + 
Sbjct: 426 PYYVDLMAFIDRPLQ 440


>gi|85085468|ref|XP_957516.1| hypothetical protein NCU04439 [Neurospora crassa OR74A]
 gi|74696212|sp|Q7RZ35|DBP4_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-4
 gi|28918608|gb|EAA28280.1| hypothetical protein NCU04439 [Neurospora crassa OR74A]
 gi|40882181|emb|CAF06007.1| probable putative RNA helicase HCA4 [Neurospora crassa]
          Length = 823

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 119/460 (25%), Positives = 218/460 (47%), Gaps = 20/460 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL L       +  + +   T +Q   IPL L+  D+ G A+TG+GKT +F++P+L 
Sbjct: 58  KFSDLPLCEPTASGLRASHFEVLTDVQRAAIPLALKGQDILGAARTGSGKTLAFLVPVLE 117

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L + R         LI+ PTRELA Q+ +   K G+N++ +  L+IGG   + + ++L 
Sbjct: 118 KLYRARWTEYDGLGALIISPTRELAVQIFEVLRKIGRNHSFSAGLVIGGKSLKEEAERLG 177

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +          ++N+++LV+DEADR++DMGF   +  +   +P +RQT
Sbjct: 178 RMNILVCTPGRMLQHLDQTAGFDVDNLQMLVLDEADRIMDMGFQQAVDALVEHLPKSRQT 237

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT +  +  ++   L++P+ + V+  +++A  +            +K         
Sbjct: 238 LLFSATQSKRVSDLARLSLKDPEYVSVHEAAASATPVGLQQHYIVTPLPEKL-DTLWGFL 296

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQL 298
             +     I+F +  K V  +  S ++    +    +HG   Q +R++I + F       
Sbjct: 297 RTNLKSKIIVFMSSGKQVRFVYESFKRMQPGIPLLHLHGRQKQIARLEITNRFTSAKYSC 356

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+ ARG+D P V  V   D P  A+ YIHR+GRT R    G+A   +   + +   
Sbjct: 357 LFATDVVARGVDFPAVDWVIQVDCPEDADTYIHRVGRTARYESKGRAVLFLDPSEEEGF- 415

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +++L  KKV             ++K+++ ++      N +  +S  F      Y  QK+
Sbjct: 416 -LKRLEHKKV------------TVQKVNVKENKKKSIKNEL--QSQCFQSPDLKYLGQKA 460

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
            +    S  + K ++  + +  D  GF  ++     P+ R
Sbjct: 461 FVSYVRSIYLQKDKEVFKFDKLDLDGFASSLGLPGTPQIR 500


>gi|302406797|ref|XP_003001234.1| ATP-dependent RNA helicase DBP10 [Verticillium albo-atrum VaMs.102]
 gi|261359741|gb|EEY22169.1| ATP-dependent RNA helicase DBP10 [Verticillium albo-atrum VaMs.102]
          Length = 902

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 143/498 (28%), Positives = 241/498 (48%), Gaps = 52/498 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+V+PTPIQ KTIPL++ R DV G+A+TG+GKTA+FV+PM+  
Sbjct: 89  FQVMGLNSNLLRAITKKGFVQPTPIQRKTIPLIMDRKDVVGMARTGSGKTAAFVIPMIER 148

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LI+ P+RELA Q     + + K  +L  AL++GG   + Q   L   
Sbjct: 149 LKTHSAKFGA-RALIMSPSRELAIQTLRVVKDFNKGTDLKAALVVGGDSMDEQFSLLSAN 207

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P +RQ+LL
Sbjct: 208 PDIIIATPGRFLHLKVEMSLNLSSIQYVVFDEADRLFEMGFAAQLTEILHALPPSRQSLL 267

Query: 183 FSATMTDELQKVSENFLQNPK-------------------------------RIEVNTPS 211
           FSAT+   L + +   LQ+P                                 I  +   
Sbjct: 268 FSATLPASLVEFARAGLQDPTLVRLDIETKVSPDLESAFFGVKGAEKEASLLHILHDIIK 327

Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271
               + +   +       +K        + + T  + IIF   K +V  L + L   GF+
Sbjct: 328 MPLGSPDGMPLDGKPNKKRKRGKDGSGGKGKPTEHSTIIFAATKHHVEYLANLLRVAGFA 387

Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331
           V  ++G +DQ +R     NF+ G   ++V +D+AARG+DIP + +V N+D P + + ++H
Sbjct: 388 VSYVYGALDQEARRIHTENFRNGRSNILVVTDVAARGIDIPVLANVINYDFPPQPKVFVH 447

Query: 332 RIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV--------DWLNGDLSSLNPPLE 383
           R+GRT RAG+ G A+++V + D  ++  ++  + +K+           N ++     P  
Sbjct: 448 RVGRTARAGQRGWAYSIVRELDAPYLLDLQLFLGRKMVVGRESESPSYNEEVVVGALPRN 507

Query: 384 KIDI---------AQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKE---SEKISKL 431
           +I++           H        +  K+     + +N +S +S    +E   S+  S+L
Sbjct: 508 RIEVHMEWLAKVLGDHEDIEATRRVSVKAEKLYLKTRNSASSQSARRARETVGSKAWSQL 567

Query: 432 QQDIQENDADSLGFRGNM 449
                E   D    R  +
Sbjct: 568 HPLFDEVKDDDAQARAEL 585


>gi|222153538|ref|YP_002562715.1| helicase [Streptococcus uberis 0140J]
 gi|222114351|emb|CAR43072.1| putative helicase [Streptococcus uberis 0140J]
          Length = 447

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 119/453 (26%), Positives = 194/453 (42%), Gaps = 32/453 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+    + +PT +Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDYNFKEYIQKALDAIRFQEPTEVQKKLIPIVNSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNK 117
             L++    V+     I  P+RELA Q+ +   +        + L              K
Sbjct: 61  EKLKENSQDVQAV---ITAPSRELATQIFEAARQIASYSEEEIRLANYVGGTDKLRQIEK 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  +++ TPGRI D    G L ++     V+DEAD  +DMGF+  +  I S +P +
Sbjct: 118 LQVSQPHIVVGTPGRIYDLVQSGHLAIHKAATFVVDEADMTMDMGFLDTVDKIASTLPKS 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  ++TI        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLSNPVMEQIKTETVISDTI---DNWLLSTKGRNNNEQIL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +          +IF N K+    L   L   G  V  IHG +  R R +I++  K+   +
Sbjct: 235 MTLKTMQPYLAMIFVNTKERADELHQFLISNGLKVAKIHGGVPPRERKRIMNQVKKLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF----------- 406
             +EK+    + ++   L             + N  +    +  +  G            
Sbjct: 355 KELEKM---GIAFVPKVLKDGEFQDSYDRDRRQNREKSYQKLDTEMIGLVKKKKKKVKPA 411

Query: 407 ---------DRRKKNYSSQKSHIPLKESEKISK 430
                    D +++     +S    + + K  K
Sbjct: 412 YKKKIQWVVDEKRRKERRAESRAKGRAARKAKK 444


>gi|50309861|ref|XP_454944.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74690098|sp|Q6CM95|SUB2_KLULA RecName: Full=ATP-dependent RNA helicase SUB2
 gi|49644079|emb|CAH00031.1| KLLA0E21935p [Kluyveromyces lactis]
          Length = 437

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 157/375 (41%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P++  A++D G+  P+ +Q  TIP  +   DV   A++G GKTA FVL  L  
Sbjct: 55  FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
           L+  +  V +                   F KY       +           +  +KK  
Sbjct: 115 LDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKET 174

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++           ++   L +    ++ +    + ++     +Q+I    P  +Q 
Sbjct: 175 VPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQV 234

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ E++ +   FLQNP  I V+  +         +     +  K        L 
Sbjct: 235 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNR--KLAQLL 292

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF         L   L    F    +HG++ Q  R+     FKE   ++ V
Sbjct: 293 DDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICV 352

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           ++D+  RG+DI  +    N+D+PN A+ Y+HR+GR GR G  G A +++ +++D + +  
Sbjct: 353 STDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAK 412

Query: 360 IEKLIEKKVDWLNGD 374
           I++  + K+     +
Sbjct: 413 IQERFDVKITEFPEE 427


>gi|323355122|gb|EGA86952.1| Dbp3p [Saccharomyces cerevisiae VL3]
          Length = 537

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 113/417 (27%), Positives = 194/417 (46%), Gaps = 13/417 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L L   +   +    + KPTPIQ    P +L   DV G+A+TG+GKT +F +P +
Sbjct: 114 LSFDYLSLDSSIQAEISK--FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAI 171

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + L     + R  + L++ PTRELA+Q+ DN         +    + GG+P + Q  +L+
Sbjct: 172 SHL-MNDQKKRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLK 230

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V+      +         L     +++ +    +           I       RQT
Sbjct: 231 KSQVVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQT 290

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV----ATYAQYSKKCALLQ 236
           L+F+AT   E+++++  F+ NP ++ +              +        +  K   LL+
Sbjct: 291 LMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLK 350

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +        +  +IF   KK    +  +L+  G++V AIHG++ Q+ R + L+ FK G  
Sbjct: 351 KYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKS 410

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L++A+D+AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG+ G A TL  +++   
Sbjct: 411 NLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEKHL 470

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
              +  ++      +  DL       +K + + +    K+  + +K       KKNY
Sbjct: 471 AGGLVNVLNGANQPVPEDLIKFGTHTKKKEHSAYGSFFKDVDLTKK------PKKNY 521


>gi|149910890|ref|ZP_01899522.1| putative ATP-dependent RNA helicase [Moritella sp. PE36]
 gi|149806044|gb|EDM66027.1| putative ATP-dependent RNA helicase [Moritella sp. PE36]
          Length = 424

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 135/432 (31%), Positives = 227/432 (52%), Gaps = 24/432 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGL   ++  + +  Y++PTPIQ + IP VL   D+   A TG+GKTA+F LP+L 
Sbjct: 9   NFTELGLISPLLTRLTEMEYLQPTPIQAQAIPSVLAGRDLIAGANTGSGKTAAFALPLLQ 68

Query: 62  ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113
            L   +       +      LIL PTRELA QVAD+ + Y  + N  +    + GG+   
Sbjct: 69  QLHTEKQLSDTSSKGNYVTGLILVPTRELAIQVADSIKSYAAHLNGAIKTLAVFGGVSAN 128

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  G D+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  + +L
Sbjct: 129 TQMLALRGGTDILVATPGRLLDLISSNAIKLDRVKTLVLDEADRMLSLGFTEELSALLAL 188

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
            P  +Q LLFSAT  +++Q +++  L +P  I++ +  ++        V    + +    
Sbjct: 189 TPKQKQILLFSATFPEQVQALTQELLNDPVEIQLQSADASTLVQRVFTVTKGEKTALLAH 248

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L+++        +  +IF N K +  +L   L K+G +    HG+  Q +R++ L  FK 
Sbjct: 249 LIKRHEW-----RQVLIFVNSKHSCNHLADKLAKRGITSQVFHGDKGQSARIRTLDGFKA 303

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G + +++A+D+AARG+DI  +  V NFD+P    +Y+HRIGR+GRAG  G A +L+  ED
Sbjct: 304 GQVHVLIATDIAARGIDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHED 363

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
             H   IEK  + +++             +++     +      P+        +++KN 
Sbjct: 364 YHHFSTIEKKNKIRLER-----------EQEVGFEVDDAVEAYIPMAPPEGSGKKKRKNK 412

Query: 414 SSQKSHIPLKES 425
           +   + I L +S
Sbjct: 413 APVNADIWLNKS 424


>gi|229593065|ref|YP_002875184.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens SBW25]
 gi|229364931|emb|CAY53031.1| ATP-independent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 461

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 204/380 (53%), Gaps = 10/380 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  +   GYV+ T IQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 8   FNTLPLSAAMLANLDSLGYVEMTQIQAQSLPVILKGLDLIAQAKTGSGKTAAFGIGLLNP 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLER 121
           +     R    + L++ PTRELA QVA    +  +  +    L + G +    Q   LE 
Sbjct: 68  INP---RYFGCQALVMCPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSLGPQIASLEH 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGRI  H  +G L+++ +  L++DEADRMLDMGF   I++I S  P  RQTL
Sbjct: 125 GAHVIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIISKTPPRRQTL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++  F     R      +    + +      Y    ++       + +
Sbjct: 185 LFSATYPVSIKQLASKF----MRAPQQVKAEAFHSDDQIEQRFYEISPEERMEAVTKVLA 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FC  K+ V      L  +G S   +HG+++QR R ++L+ F   +  ++VA
Sbjct: 241 HFRPASCVAFCFTKQQVQETVDHLTAKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   +E +IHR+GRTGRAG  G A +LVA  +     AIE
Sbjct: 301 TDVAARGLDIDSLDMVINVELARDSEIHIHRVGRTGRAGETGIAISLVAPSEAHRAQAIE 360

Query: 362 KLIEKKVDWLNGDLSSLNPP 381
           +L +  ++W    L +L P 
Sbjct: 361 QLQKSPLNW--DQLDNLKPQ 378


>gi|212527694|ref|XP_002144004.1| ATP dependent RNA helicase (Dbp8), putative [Penicillium marneffei
           ATCC 18224]
 gi|210073402|gb|EEA27489.1| ATP dependent RNA helicase (Dbp8), putative [Penicillium marneffei
           ATCC 18224]
          Length = 538

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 119/384 (30%), Positives = 191/384 (49%), Gaps = 18/384 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L ++P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F +P+L 
Sbjct: 109 TFATLNVAPWLVKSLSTMAIRRPTAIQKSCIPEILKGKDCIGGSRTGSGKTIAFAVPILQ 168

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +    V      +L PTRELA Q+ + F+      +L   L+ GG     Q   L +
Sbjct: 169 KWAEDPFGVFAV---VLTPTRELALQIFEQFKAISAPQSLKPVLITGGTDMRPQAIALSQ 225

Query: 122 GADVLICTPGRILDHFNRGKLLM----NNIEILVIDEADRMLDMG---FIPYIQNITSLV 174
              V+I TPGR+ DH            N + ++V+DEADR+L  G    +P ++   S +
Sbjct: 226 RPHVIIATPGRLADHIRTSGEDTIVGLNRVRMVVMDEADRLLTSGQGSMLPDVETCLSAL 285

Query: 175 PFTRQTLL--FSATMTDEL-----QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           P + +     F+AT+T E+          N              +               
Sbjct: 286 PPSSERQTLLFTATVTPEVRALKSMPRPANRPPIHVTEIGTENHAPIPPTLKQTYLQVPM 345

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             ++  L   L   +++ K  IIFCN+ +    L   L +    V ++H  + Q  R   
Sbjct: 346 THREAFLHVLLSTERNSTKPAIIFCNRTRTADLLERILRRLSHRVTSLHSLLPQSERTAN 405

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           LS F+    +L+VA+D+A+RGLDIP+V  V NFDVP   ++Y+HR+GRT RAGR G++ T
Sbjct: 406 LSRFRASAARLLVATDVASRGLDIPNVSLVINFDVPRNPDDYVHRVGRTARAGRTGESVT 465

Query: 348 LVAKEDIKHIDAIEKLIEKK-VDW 370
           LV + D++ + AIEK + ++ ++W
Sbjct: 466 LVGQRDVQLVLAIEKRVGRQMIEW 489


>gi|19074778|ref|NP_586284.1| ATP-DEPENDENT RNA HELICASE (DEAD box family) [Encephalitozoon
           cuniculi GB-M1]
 gi|74664169|sp|Q8SR01|DBP4_ENCCU RecName: Full=ATP-dependent RNA helicase DBP4
 gi|19069420|emb|CAD25888.1| ATP-DEPENDENT RNA HELICASE (DEAD box family) [Encephalitozoon
           cuniculi GB-M1]
          Length = 452

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 98/365 (26%), Positives = 173/365 (47%), Gaps = 8/365 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F DL +  ++   + + G+V    +Q K IP+ L+ HD+ G +QTGTGKT +F++P +
Sbjct: 4   MKFEDLKIDQRIEKGLRENGFVSMKEVQQKVIPMALEGHDIIGSSQTGTGKTLAFLVPTL 63

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             ++  G         L++ PTRELA Q+ D   +  K   L+  L++GG+  E +  K+
Sbjct: 64  QRLVSLGWGGGDGLGCLVITPTRELALQIFDVLSRIAKYTVLSTGLIMGGLEAEDELLKV 123

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   ++      +        L   N++IL++DEAD+M++MGF   +++I   +P  +Q
Sbjct: 124 NQMNILVCTPGRLLQHLQENPYLSTANVQILILDEADKMIEMGFKEVLEDILEYIPQKKQ 183

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT      ++ +        I       +        + T  + +          
Sbjct: 184 TLLFSATPKASTARILKLEDPRIISIYKEEGFPSQLRQYFYMMRTGDKIN-----YLHTF 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEK--QGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              +    GI+F +  K V   C   E+      +  + G + Q+ R+ +   F +    
Sbjct: 239 IGSNPEVKGIVFFSTCKEVKFHCLLFERLKLRNRIFCLSGGMSQKQRIDVFKRFVKEKNG 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++  +DL +RGLD P V  V  +D P   E Y+HR+GRT R    G+++  +   + K +
Sbjct: 299 ILFCTDLGSRGLDFPKVDVVIQYDCPCNVETYVHRVGRTARNSERGESYVYLVHGEEKLL 358

Query: 358 DAIEK 362
             I+K
Sbjct: 359 TDIQK 363


>gi|289742677|gb|ADD20086.1| RNA helicase [Glossina morsitans morsitans]
          Length = 543

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 104/485 (21%), Positives = 195/485 (40%), Gaps = 23/485 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F ++ L  +++ A+   G+ +PT IQ   IPL+L+  DV   A+TG+GKTA+F LP+L
Sbjct: 8   LQFHEMELDDRILKAISKLGWTEPTLIQEAAIPLLLEGKDVIVKARTGSGKTAAFALPLL 67

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNK 117
             +   +     +    LIL P++EL  Q     ++  +     + ++        AQ  
Sbjct: 68  QKILNTKMNAAEQCISALILAPSKELCQQTRVAMQQMSEKCGKVLRIIDLSSNDLLAQRH 127

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L    DV++ TP +IL H     L +  +E LV+DEAD     GF    +     +P  
Sbjct: 128 ALSERPDVVVSTPAKILLHLQASALDLKCLETLVVDEADLAFSFGFEKEFKKFVEYLPPI 187

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA---- 233
            Q +L SAT+T E+  +    L+NP  +++  P    E           +  K       
Sbjct: 188 YQAVLVSATITQEVIDIKSIILKNPVILKLEEPELVPEQQLLHQRIIVEEDDKPAILYAL 247

Query: 234 -----------LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                      +    +     +K  I   + K  V+N       +  ++   +      
Sbjct: 248 LKLRLIRGKNVIFVNSVDRSYKLKLFIEQFSIKSCVLNSELPSTIRIHTINQFNQGAYDL 307

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
                    +            A+RG+D   V +V N D P  A +YIHR GRT R    
Sbjct: 308 IIASDEHMLENPGRNKSDKESGASRGIDFHCVSNVINLDFPKDANSYIHRAGRTARGNNK 367

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ- 401
           G   + V+  + +  + +E+ +          + +    L++++  ++        I + 
Sbjct: 368 GTVLSFVSLHEQQTNEKVEERLRSGYKSDEQIIKNYQFKLDEVEPFRYRAKDAWRAITRI 427

Query: 402 ---KSTGFDRRKKNYSSQKSHIPLKESEK-ISKLQQDIQENDADSLGFRGNMPAFMLPKN 457
              +S   + +++ ++S+K      E+ + +  L+ D              +P +++PK 
Sbjct: 428 AVHESRVREIKQEIFNSEKLKGFFNENTRDLQVLRHDKPLKTIKIQPHLSQVPDYIVPKA 487

Query: 458 RGKLN 462
             +L 
Sbjct: 488 LKRLT 492


>gi|295667653|ref|XP_002794376.1| ATP-dependent RNA helicase DBP10 [Paracoccidioides brasiliensis
           Pb01]
 gi|226286482|gb|EEH42048.1| ATP-dependent RNA helicase DBP10 [Paracoccidioides brasiliensis
           Pb01]
          Length = 905

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 129/401 (32%), Positives = 215/401 (53%), Gaps = 36/401 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPL+L   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 84  FQSMGLNATLLKAIARKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 143

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LI+ P+RELA Q     ++ G+  +L   LL+GG   E Q + +   
Sbjct: 144 LKSHSAKFGA-RALIMSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFEYMSGN 202

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 203 PDIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFSAQLTEILHGLPSSRQTLL 262

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA------------------- 223
           FSAT+   L + +   LQ P  I ++  S  +  +++ F                     
Sbjct: 263 FSATLPKSLVEFARAGLQEPTLIRLDAESKISPDLQNGFFTIKSSEKEGALLHLLHDIIK 322

Query: 224 ----------------TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
                              +  K+   + +  +   T  + IIF   K +V  L   L +
Sbjct: 323 IPTGETEAGKRTKEELHNPKKRKRSDPVVKSHKESPTEHSTIIFTATKHHVDYLTSVLRQ 382

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            GF+V   +G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D P++++
Sbjct: 383 SGFAVSYAYGSLDQTARKIEVQNFRSGITHILVVTDVAARGIDIPILSNVINYDFPSQSK 442

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            ++HR+GRT RAGR G +++L+ + D  ++  ++  + + +
Sbjct: 443 IFVHRVGRTARAGRTGWSYSLIRESDAPYLLDLQLFLGRPL 483


>gi|145345534|ref|XP_001417262.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577489|gb|ABO95555.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 654

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 119/370 (32%), Positives = 180/370 (48%), Gaps = 12/370 (3%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM---- 59
            +  LS  V   +   G+     IQ +T+ + L   DV G A+TG GKT +FVLP+    
Sbjct: 86  DNFALSEPVKATLRKKGFDALFAIQAETLEIALSGKDVVGRARTGCGKTLAFVLPIVEEM 145

Query: 60  ----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                      R + R P  ++L PTRELA QV  +F+  G ++      + GG P+  Q
Sbjct: 146 AKISPMPANGRRVQGRRPMCVVLAPTRELAKQVFADFDWIGNSFGFKSVCVYGGTPYREQ 205

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L  G DV+I TPGR+ DH  R  L+M+ ++  V+DEAD ML+MGF+  ++ I     
Sbjct: 206 EMGLRGGCDVVIGTPGRMKDHLERKTLMMDKLKFRVLDEADEMLNMGFVDDVELILKSSG 265

Query: 176 FTRQTLLFSATMTDELQKVSENF--LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
             +  LLFSAT+   ++ +++ F          V      A       +       +   
Sbjct: 266 DVQT-LLFSATLPPWVKDIAKRFLKPDYATVDLVGDQKQKASGAVQHMLLPCQWSDRVDL 324

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHS-LEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           +   +          I+FC+ K++   LC +  ++      A+HG++ Q  R  +L+ F+
Sbjct: 325 VCDVIRSKAPGGGRVIVFCDTKRDCGELCDNLQKEIPKGAKALHGDVSQGQREVVLAGFR 384

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           E   Q++VA+D+AARGLDI  V  V   + P  AE YIHR GRTGRAG  G + TL    
Sbjct: 385 EDKFQVLVATDVAARGLDITGVELVIQCEPPKDAETYIHRSGRTGRAGATGISVTLCTPR 444

Query: 353 DIKHIDAIEK 362
               +  IE+
Sbjct: 445 SEWAVPNIER 454


>gi|169852452|ref|XP_001832910.1| ATP-dependent RNA helicase HAS1 [Coprinopsis cinerea okayama7#130]
 gi|116506045|gb|EAU88940.1| ATP-dependent RNA helicase HAS1 [Coprinopsis cinerea okayama7#130]
          Length = 640

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 95/345 (27%), Positives = 152/345 (44%), Gaps = 3/345 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS   + A+ D G+   T IQ K+IP++L   DV G A+TG+GKT +F++P + +
Sbjct: 107 FNTLDLSEPTLRALKDMGFETMTSIQAKSIPVLLAGKDVLGAARTGSGKTLAFLIPAVEL 166

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEK--YGKNYNLTVALLIGGIPFEAQNKKLE 120
           L + + +      +I+       A       K     +      ++ G  P    +K  +
Sbjct: 167 LHRLKFKPVNGTGIIILTPTRELALQIFGVAKDLMAYHSQTFGVVIGGANPKAEVDKLSK 226

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF-IPYIQNITSLVPFTRQ 179
               ++      +    N    +  N+  LVIDEADR+L++GF     + I+ L    RQ
Sbjct: 227 GVNLLVATPGRLLDHLQNAKGFVYRNLRALVIDEADRILEIGFEEEMKRIISILPNENRQ 286

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           ++LFSAT T ++  ++   L+               T+           S     L    
Sbjct: 287 SMLFSATQTTKVTDLARISLRPGPVHVDVDKEEATSTVSTLSQGYVVCSSDMRFRLLYTF 346

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  I+F +   +V      L      V  +HG   Q  R      F      ++
Sbjct: 347 LKKNLKKKVIVFFSSCNSVKYHAELLNYIDVPVLDLHGKQKQMKRTNTFFEFINAESGIL 406

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
           + +D+AARGLDIP V  +  FD P+   +YIHR+GRT RAG+ GK
Sbjct: 407 LCTDVAARGLDIPRVDWIVQFDPPDDPRDYIHRVGRTARAGKVGK 451


>gi|332208126|ref|XP_003253149.1| PREDICTED: probable ATP-dependent RNA helicase DDX10 isoform 1
           [Nomascus leucogenys]
          Length = 872

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 125/446 (28%), Positives = 208/446 (46%), Gaps = 15/446 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F+D  LS K +  + +A Y   T IQ +TI L LQ  DV G A+TG+GKT +F++P +  
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +             LI+ PTRELA Q  +   K GKN++ +  L+IGG   + + +++  
Sbjct: 131 LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINN 190

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +            ++++LV+DEADR+LDMGF   +  I   +P  RQTL
Sbjct: 191 INILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTL 250

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L+NP+ + V+   +   T             ++   +      
Sbjct: 251 LFSATQTKSVKDLARLSLKNPEYVWVHE-KAKYSTPATLEQNYIFCELQQKVSVLYSFLR 309

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA--IHGNIDQRSRMKILSNFKEGTIQLM 299
               K  I+F +  K V  L     +    V    +HG   Q  RM++ + F      ++
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVL 369

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V  FD P  A  YIHR GRT R    G+A  ++   +   +  
Sbjct: 370 FATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAMV-- 427

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
            ++L++KKV      ++    P   ID+      +  + + Q     +R ++ + S    
Sbjct: 428 -QQLLQKKVPVKEIKIN----PERLIDV----QKKLESFLAQDQDLKERAQRCFISYIRS 478

Query: 420 IPLKESEKISKLQQDIQENDADSLGF 445
           + L + +++  + +      A SLG 
Sbjct: 479 VYLMKDKEVFDVSKLPIPEYALSLGL 504


>gi|326796106|ref|YP_004313926.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326546870|gb|ADZ92090.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 460

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 134/407 (32%), Positives = 213/407 (52%), Gaps = 17/407 (4%)

Query: 2   DFAD---LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           +F+    L L  ++   + D G+   TP+Q + +P +L+  D+   AQTG+GKT +F + 
Sbjct: 3   NFSHSLPLALPSELTKLLGDMGFKGFTPVQEQCLPDILEGKDLLAQAQTGSGKTLAFAIG 62

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNK 117
           +L  +     R    + LI+ PTRELA QVA    +  +  N    L +  G+PF  Q  
Sbjct: 63  LLLRI---NPRYFSTQALIMCPTRELADQVAKEIRRVARFMNNIKVLTLCGGMPFGPQIG 119

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            LE GA +++ TPGR+L+H  +  L +  +  LV+DEADRMLDMGF+  I+ +    P T
Sbjct: 120 SLEHGAHIVVGTPGRLLEHLRKRTLSLQYLNTLVLDEADRMLDMGFVDSIREVVLETPST 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT  D ++++S  F  NP +I++         I+  F  T             
Sbjct: 180 RQTLLFSATYGDNIEEISNEFQNNPSQIQIEVNQDLKPDIKQFFARTEKAQK---YETLL 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
              +    +  I+FCN K +   +   L +Q  S  AIHG+++Q+ R ++L  F   +  
Sbjct: 237 DSLAYFGPRQAIVFCNTKADTQAVADFLNEQSVSTVAIHGDLEQKQRDQVLVRFANKSAC 296

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +MVA+D+AARG+D+ ++  V NFD     + + HRIGRTGRAG  G+A + +  +D   +
Sbjct: 297 IMVATDVAARGIDVKEIDLVINFDTTRDIDVHTHRIGRTGRAGHSGQALSFITDKDDYKL 356

Query: 358 DAIEKLIEKKVDWLNGDLS----SLNPPLEKIDIAQHNHARKNNPIP 400
             I +  +   ++++   +    SL P +  I     +  RKN   P
Sbjct: 357 KGIIERFDITPEFIDLPETPLSYSLTPEMATI---AFDAGRKNKLRP 400


>gi|118094019|ref|XP_422189.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 625

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 107/398 (26%), Positives = 180/398 (45%), Gaps = 12/398 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F   G    +   + ++GY  PTPIQ++ IP+ L   D+   A TG+GKTA+F+LP++
Sbjct: 209 IEFEHCGFPETLNSNLKNSGYEVPTPIQMQMIPVGLLGRDIVASADTGSGKTAAFLLPVI 268

Query: 61  TILEKGRARVRMPRTLILEPTRE-LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +         P  LIL PTRE          E      N+   LL+GG+P   Q  +L
Sbjct: 269 MKV---LNETETPSALILAPTRELAIQIERQAKELMAGLPNMRTVLLVGGLPLPPQLHRL 325

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   V+I TPGR+L+   +  + ++ I+I+V+DE D ML MGF   + +I   +    Q
Sbjct: 326 KQSVKVIIATPGRLLEILRQSSVQLHGIKIVVVDEVDTMLKMGFQQQVLDILEDISHDHQ 385

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+L SAT+   ++ ++   L N  RI +   +     +    +       KK        
Sbjct: 386 TILVSATIPVGIEHLANQLLHNFVRITIGEKNLPCSNVRQIILWVEEPSKKKKLFEILND 445

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +    +    +      +  G    ++H    Q  R  IL    +   +++
Sbjct: 446 KKLFKPPVLVFVDCKLGADLLSDAVHKITGLQCTSMHSEKSQVERTAILQGLLQEKYEVI 505

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +  RGLD+ +V  V NFD+P+  + Y+H++GR GR G  G A T +     K    
Sbjct: 506 VSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRAGRLGHSGTAITFINNNSKKLFWD 565

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           + K ++     L   L  LN P        H+  R+  
Sbjct: 566 VVKRVKPTGTILPPQL--LNSP------YLHDQKRREQ 595


>gi|41407579|ref|NP_960415.1| hypothetical protein MAP1481c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395932|gb|AAS03798.1| hypothetical protein MAP_1481c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 497

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 117/361 (32%), Positives = 188/361 (52%), Gaps = 4/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+  ++V A+   G   P PIQ +T+P  L   DV G  +TG+GKT +F +P++ 
Sbjct: 49  TFADLGVPARIVDALTARGITSPFPIQAETLPDTLAGRDVLGRGKTGSGKTLAFSIPLVG 108

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L  G  R   P  L+L PTRELA Q+    E       L V+ + GG+    Q   L+ 
Sbjct: 109 RLSTGNRRPARPTGLVLAPTRELATQITATLEPLAAACGLRVSTIFGGVSQHRQVTALKA 168

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++  PGR+ D   +  + +  + + VIDEAD M D+GF+P +  I +  P   Q L
Sbjct: 169 GVDIVVACPGRLEDLMRQRLITLEAVRVTVIDEADHMADLGFLPGVTRILAATPNDGQRL 228

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ + + K+   FL++     V+  +S    + H      +  +K     + + + 
Sbjct: 229 LFSATLDNGVDKLVTRFLRDAVLHSVDEANSPVSEMTHHVFHVDSVQAK----KELVHRL 284

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K     +   L + G     +HGN+ Q +R + L+ F  G+ +++VA
Sbjct: 285 ASGTGRRILFLRTKHQARKVARQLTESGVPSVDLHGNLSQPARERNLAMFAAGSARVLVA 344

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ + +V  V + D P+  ++Y+HR GRT RAG  G   T+V  E  +H  A+ 
Sbjct: 345 TDIAARGVHVDEVELVVHIDPPSEHKSYLHRSGRTARAGSAGDVVTVVLPEQREHTRALM 404

Query: 362 K 362
           +
Sbjct: 405 R 405


>gi|332534400|ref|ZP_08410240.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036134|gb|EGI72609.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 462

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 207/367 (56%), Gaps = 7/367 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L   +V  +   GY   TP+Q +++P VL   D+   A+TG+GKTA+F L +L  
Sbjct: 6   FSSLALPAGLVDNLSTLGYAHMTPVQAQSLPPVLAGKDIIAQAKTGSGKTAAFSLGVLAK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L   R R++   +L+L PTRELA QVA    K  +  +    L +  G+    Q   LE 
Sbjct: 66  LNVKRFRIQ---SLVLCPTRELAEQVAVEMRKLARGIHNIKILTLCGGVSIGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ DH  +G L ++++E LV+DEAD+MLDMGF   +  I   +P  RQTL
Sbjct: 123 GAHIIVGTPGRVDDHIRKGTLRLDDVETLVLDEADQMLDMGFQDTLDAIIERIPQNRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    ++ +++  L+NP+ ++V                     +K+     +LL  
Sbjct: 183 LFSATFPRAIEAIAKRVLKNPEMVKVEE---EQAKSTIKQYFYKMDNNKQRYPTLKLLLL 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           + T ++ ++FCN K     +C  L  +GFS  A+HG+++QR R + L +F   +  ++VA
Sbjct: 240 KFTPQSCVVFCNTKVETQQVCDDLADEGFSAVALHGDLEQRDRERTLIHFSNKSASILVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI D+  V N+ + +  + ++HR+GRTGRAG+ G A ++  + +   I  I 
Sbjct: 300 TDVAARGLDIDDMDMVINYHLAHDTQTHVHRVGRTGRAGKKGIACSIYGEAEAFKIAQIG 359

Query: 362 KLIEKKV 368
              E+ +
Sbjct: 360 DHYERDI 366


>gi|302667761|ref|XP_003025461.1| hypothetical protein TRV_00401 [Trichophyton verrucosum HKI 0517]
 gi|291189571|gb|EFE44850.1| hypothetical protein TRV_00401 [Trichophyton verrucosum HKI 0517]
          Length = 455

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 129/392 (32%), Positives = 210/392 (53%), Gaps = 5/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L+ +++  V   G+ +P+ IQ + I  V++  DV   AQ+GTGKTA+F +  L 
Sbjct: 24  SFDAMNLNSELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++  + LIL PTRELA Q+       G   N+     IGG       K L+ 
Sbjct: 84  KVDTN---LKACQALILAPTRELAQQIQKVVVAIGDFMNVDCHACIGGTNVREDMKALQD 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I   +P + Q +
Sbjct: 141 GPQVVVGTPGRVHDMIQRRVLKTDHIKMFVLDEADEMLSRGFTEQIYDIFQFLPQSTQVV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 201 LLSATMPPDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L+ + F+V A+HG+++Q  R  I+  F+ G+ ++++A
Sbjct: 259 TVTITQAVIFCNTRRKVDWLTDKLQARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 378

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           +    +++ +  +++    P   +   Q    
Sbjct: 379 QFYSTQIEEMPMNVAGKLFPSNSMRRRQRKKT 410


>gi|225680138|gb|EEH18422.1| ATP-dependent RNA helicase dbp10 [Paracoccidioides brasiliensis
           Pb03]
          Length = 934

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 129/401 (32%), Positives = 216/401 (53%), Gaps = 36/401 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPL+L   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 84  FQSMGLNATLLKAIARKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 143

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LI+ P+RELA Q     ++ G+  +L   LL+GG   E Q + +   
Sbjct: 144 LKSHSAKFGA-RALIMSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFEYMSGN 202

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 203 PDIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFSAQLTEILHGLPSSRQTLL 262

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA------------------- 223
           FSAT+   L + +   LQ P  I ++  S  +  +++ F +                   
Sbjct: 263 FSATLPKSLVEFARAGLQEPTLIRLDAESKISPDLQNGFFSIKSSEKEGALLHLLHDIIK 322

Query: 224 ----------------TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
                              +  K+   + +  +   T  + IIF   K +V  L   L +
Sbjct: 323 IPTGETEAGKRTKEELHNPKKRKRSDTVLKSHKESPTEHSTIIFTATKHHVDYLTSVLRQ 382

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            GF+V   +G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D P++++
Sbjct: 383 SGFAVSYAYGSLDQTARKIEVQNFRSGITHILVVTDVAARGIDIPILSNVINYDFPSQSK 442

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            ++HR+GRT RAGR G +++L+ + D  ++  ++  + + +
Sbjct: 443 IFVHRVGRTARAGRTGWSYSLIRESDAPYLLDLQLFLGRPL 483


>gi|321250140|ref|XP_003191703.1| hypothetical protein CGB_A8530W [Cryptococcus gattii WM276]
 gi|317458170|gb|ADV19916.1| Hypothetical protein CGB_A8530W [Cryptococcus gattii WM276]
          Length = 860

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 123/463 (26%), Positives = 204/463 (44%), Gaps = 31/463 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L +S K    +  + ++ PTPIQ   IP  LQ  D+ G A+TG+GKT +F++P+L  
Sbjct: 62  FSELPMSSKTQKGLKSSHFLNPTPIQSLAIPPALQARDILGSAKTGSGKTLAFLIPLLER 121

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   +         +++ PTRELA Q        GK +N +  L+IGG P + + ++L R
Sbjct: 122 LYLEKWGPMDGLGAVVISPTRELAVQTFMQLRDIGKYHNFSAGLVIGGKPLKEEQERLGR 181

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +    +      + +++LV+DEADR+LD+GF+P ++ I S     +   
Sbjct: 182 MNILIATPGRLLQHLDSTVGFDPSAVKVLVLDEADRLLDLGFLPALKAIVSHFSPVQTAP 241

Query: 182 L---------FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                     FSAT + +L  +++  L  P  I  N P        +          ++ 
Sbjct: 242 GSRPSRQTLLFSATQSKDLAALAKLSLHEPLYISCNKPGEEGVMPANLEQYYAVVPLERK 301

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVV-----NLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
                          GI+F    K V               G  +  +HG   Q +R+ I
Sbjct: 302 LDALWGFVKSHLKMKGIVFVTSGKQVRQVRFIFETFRRLHPGLPLMHLHGKQKQPTRLDI 361

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
              F      L++ +D+AARGLD P V  V   D P+  + YIHR+GRT R    G A T
Sbjct: 362 FQRFSSSKSALLICTDVAARGLDFPAVDWVIQLDCPDDVDTYIHRVGRTARYQSAGTALT 421

Query: 348 LVAKEDIKHIDAI--EKLIE-KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           ++   + + + A   EK IE K++      + +L   L+       N A K   I     
Sbjct: 422 ILCPSEEEGMKARWGEKAIEVKRIKIKESKMGNLKQSLQ-------NFAFKEPEIKYLG- 473

Query: 405 GFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447
                ++ + S    I +++ + I K+ +   E  A+S+G  G
Sbjct: 474 -----QRAFISYMKSIHIQKDKSIFKIDELPAEAFAESMGLLG 511


>gi|268318337|ref|YP_003292056.1| DEAD/DEAH box helicase domain-containing protein [Rhodothermus
           marinus DSM 4252]
 gi|262335871|gb|ACY49668.1| DEAD/DEAH box helicase domain protein [Rhodothermus marinus DSM
           4252]
          Length = 505

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 137/442 (30%), Positives = 230/442 (52%), Gaps = 8/442 (1%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L  ++  A    G+ +  P+Q +T+P +L+  DV   +QTG+GKT +F+LP+   L+  R
Sbjct: 45  LPERMQQAARAIGWTELMPVQRRTLPYLLEGRDVIVQSQTGSGKTGAFLLPLFERLDPSR 104

Query: 68  ARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
            +V+    T   E  R+++              +L   L+ GG+ +  Q K LE+GA V+
Sbjct: 105 GQVQALILTPTRELARQISEAFEQMKTGVSGAQSLRAVLVYGGVRYGPQLKALEQGAQVV 164

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           I TPGRILD   RG L +  +++LV DEAD ML MGF P ++ +   +P  R T +FSAT
Sbjct: 165 IGTPGRILDLIERGALRLGALQVLVFDEADEMLSMGFYPAMRQLKRYLPRERNTAMFSAT 224

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
           M   +Q ++  FL++P  + ++T    AETIEH +         +  +        +  +
Sbjct: 225 MPPRVQALAREFLKDPAFVSLSTDRIAAETIEHRYFIVPPMEKDRALVQL---IELENPE 281

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + IIF N K++V  L   L+  G++  AI G++ Q+ R +I+   ++G ++L+VA+D+AA
Sbjct: 282 SAIIFANTKRDVEYLGQFLKNYGYNADAITGDLPQKQRERIMDRLRKGQLRLLVATDVAA 341

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RG+DI D+ HVF +DVP   E Y+HR GRTGR G+ G    LV   +   + AI +  + 
Sbjct: 342 RGIDISDLSHVFMYDVPQDPEYYVHRSGRTGRVGKEGTTIVLVTPLEEARLRAIARQYDI 401

Query: 367 KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESE 426
            ++   G L +     E+  +A+   A   +   + ++    R   +      +  +E E
Sbjct: 402 PLE--KGTLPTPETVAER--VAERAVALLEDRYRETTSLDRERIARFVPLVEQLAQEEPE 457

Query: 427 KISKLQQDIQENDADSLGFRGN 448
            ++ L   +  ++    G R  
Sbjct: 458 LLAMLVDALYVHEGHRRGIRSE 479


>gi|228900742|ref|ZP_04064960.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           IBL 4222]
 gi|228858926|gb|EEN03368.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           IBL 4222]
          Length = 389

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 101/367 (27%), Positives = 186/367 (50%), Gaps = 11/367 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P +  A   AG+ + T IQ + IP +L+  DV   + TGTGKT +++LP+L  +      
Sbjct: 7   PFLQEAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI---NPE 63

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           V+ P+ ++L PTREL  Q+ +  +K+     ++ A LIGG   + Q +KL++   V++ +
Sbjct: 64  VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLKKHPRVIVGS 123

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGRIL+     KL M+ ++ +V DE D+++    +  +Q++       RQ + FSAT+T 
Sbjct: 124 PGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQLVFFSATITK 183

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
             +  + +    P+ + +    S +         TY    ++                 +
Sbjct: 184 AAEDAARDLAVEPQLVRITRAESKSLVE-----HTYIICERREKNDYVRRIMHMGDVKAV 238

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
            F N    +  +   L+ +     A+H    ++ R   +  F+ G +++++A+D+AARG+
Sbjct: 239 AFLNDPFRLDEITQKLQFRKMKAAALHSEASKQEREATMRAFRGGKLEILLATDIAARGI 298

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE---K 366
           DI D+ HV + ++P+  + YIHR GRTGR G+ G   +LV +++ + +    K +     
Sbjct: 299 DIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERKLLQFAKKLGIVFT 358

Query: 367 KVDWLNG 373
           K +  NG
Sbjct: 359 KQEMFNG 365


>gi|219130818|ref|XP_002185552.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402960|gb|EEC42917.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 428

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 90/377 (23%), Positives = 163/377 (43%), Gaps = 5/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++DAG+  P+ +Q ++IP  +   D+   A++G GKTA FVL  L  
Sbjct: 47  FKDFLLKPELLRAIVDAGFEHPSEVQHESIPQAVLGGDIVCQAKSGMGKTAVFVLATLHQ 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK--KLE 120
           L        +   ++            +         ++  A+  GG+         K E
Sbjct: 107 LNPSAESEDVQVLVLCHTRELAFQIAHEYERFSKYLPSIKTAVFYGGVNVTQNRDILKKE 166

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+      +    ++   L +    ++ +    +  +     +Q I  + P  +Q 
Sbjct: 167 HPHIVVGTPGRILKLARDKDLKLSSLKHFVLDECDRVLESLDMRRDVQEIFRMTPHEKQV 226

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT++ E++ V + F Q+P  I V+  +         + A  A+  K        L 
Sbjct: 227 LLFSATLSKEIRPVCKKFCQDPMEIYVDDETKLTLHGLQLYYAKLAEAEK--NKKLNDLL 284

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   +IF ++      L   L +  F    IH  + Q  R+    +FK+   +++V
Sbjct: 285 DALEFNQVVIFVSKVARAKELNRLLTECNFPSICIHAGMRQEERISKYKSFKDFNARILV 344

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+DL  RG+DI  V  V N+D P+ ++ ++HR+GR GR G  G A + ++ E D   +  
Sbjct: 345 ATDLFGRGIDIERVNVVINYDFPDDSDQFLHRVGRAGRFGTKGIAISFISSEADQTILSQ 404

Query: 360 IEKLIEKKVDWLNGDLS 376
           I+   E  +  L  ++ 
Sbjct: 405 IQSRFEVNIPTLPDEID 421


>gi|161503259|ref|YP_001570371.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864606|gb|ABX21229.1| hypothetical protein SARI_01328 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 457

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 131/373 (35%), Positives = 213/373 (57%), Gaps = 9/373 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY++ TP+Q  ++P++L  +DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLKVLPTAQLNNLNELGYLEMTPVQAASLPVILAGNDVRVQARTGSGKTAAFGLGLLH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  RIDVSLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGVQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +  + ++ + ILV+DEADRMLDMGF   I  +    P TRQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKRTVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +  +S    Q P  I+++T     + +       +   +++   L Q L 
Sbjct: 181 LLFSATWPETIAAISGRVQQQPMHIDIDTV----DALPAIEQQFFETSAQEKISLLQTLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FCN KK+   +C +L   G S  A+HG+++QR R + L  F  G+ +++V
Sbjct: 237 SQHQPASCVVFCNTKKDCQAVCDALNAAGQSALALHGDLEQRDRDQTLVRFTNGSARILV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+++    E ++HRIGRT RAG  G A +  A E+ +  + +
Sbjct: 297 ATDVAARGLDIKSLELVVNYELAWDPEAHVHRIGRTARAGSSGLAISFCAPEEAQRANIL 356

Query: 361 EKLIEKKVDWLNG 373
            ++++ K++WLN 
Sbjct: 357 SEMLQLKLNWLNA 369


>gi|156720285|dbj|BAF76795.1| vasa-related protein [Enchytraeus japonensis]
          Length = 516

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 129/376 (34%), Positives = 202/376 (53%), Gaps = 14/376 (3%)

Query: 14  CAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG------R 67
             V  A Y KPTPIQ   IP++L + D+   AQTG+GKTA+F+LP+L+ + +        
Sbjct: 90  ENVRKANYDKPTPIQKWAIPIILAKRDLMACAQTGSGKTAAFLLPVLSTMLRNGIEGSSY 149

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127
           + V+ P+ +I+ PTREL +Q+ +   K+  N  +   ++ GG+    Q +++E+GA +++
Sbjct: 150 SEVQEPQAIIVGPTRELVSQIFNEARKFSYNTIVRPVVVYGGVQTSYQLREIEKGAHMIV 209

Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT----SLVPFTRQTLLF 183
            TPGR+LD   RGK+ +  ++ L++DEADRMLD+GF   I+ +           RQTL+F
Sbjct: 210 GTPGRLLDFIGRGKISLKKVKFLILDEADRMLDLGFKDDIKKLMNELGMPPKQERQTLMF 269

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT  +E+Q ++   L +   + V         IE           ++  +         
Sbjct: 270 SATFPEEVQSLARELLNDYLFVTVGRVGGANTDIEQMVYNVGQFDKRQKLIDLLNACPN- 328

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
             +  ++F  QK+N   L   L +      +IHG+ +QR R   L++FK G   ++VA+ 
Sbjct: 329 --ERVLVFVEQKRNADFLASFLSQSELPTTSIHGDREQREREIALNDFKSGRKPILVATS 386

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIEK 362
           +AARGLDIP V HV N+D+P   + Y+HRIGRTGR G  GKA T    E D     A+ K
Sbjct: 387 VAARGLDIPGVMHVVNYDMPKEIDEYVHRIGRTGRCGNMGKATTFFNPETDAGLARALAK 446

Query: 363 LIEKKVDWLNGDLSSL 378
           ++      L   L  +
Sbjct: 447 ILTDAQQELPDWLEEM 462


>gi|296807429|ref|XP_002844208.1| eukaryotic initiation factor 4A [Arthroderma otae CBS 113480]
 gi|238843691|gb|EEQ33353.1| eukaryotic initiation factor 4A [Arthroderma otae CBS 113480]
          Length = 395

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 126/376 (33%), Positives = 207/376 (55%), Gaps = 5/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L+ +++  V   G+ +P+ IQ + I  V++  DV   AQ+GTGKTA+F +  L 
Sbjct: 24  SFDSMNLNAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++  + LIL PTRELA Q+       G   ++     IGG       K L+ 
Sbjct: 84  KVDTN---LKACQALILAPTRELAQQIQKVVVSIGDFMSVDCHACIGGTNVREDMKALQD 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I   +P + Q +
Sbjct: 141 GPQVVVGTPGRVHDMIQRRVLKTDHIKMFVLDEADEMLSRGFTEQIYDIFQFLPQSTQVV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 201 LLSATMPPDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L+ + F+V A+HG+++Q  R  I+  F+ G+ ++++A
Sbjct: 259 TVTITQAVIFCNTRRKVDWLTDKLQARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 378

Query: 362 KLIEKKVDWLNGDLSS 377
           +    +++ +  +++ 
Sbjct: 379 QFYSTQIEEMPMNVAE 394


>gi|291299972|ref|YP_003511250.1| DEAD/DEAH box helicase domain-containing protein [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569192|gb|ADD42157.1| DEAD/DEAH box helicase domain protein [Stackebrandtia nassauensis
           DSM 44728]
          Length = 544

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 126/358 (35%), Positives = 181/358 (50%), Gaps = 7/358 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL P +V A+ + G   P PIQ  TIP  L   DV G  +TG+GKT SF LP+L 
Sbjct: 19  SFADLGLPPAIVSALAERGVTSPFPIQAATIPDALSGKDVLGRGRTGSGKTLSFGLPLLV 78

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               + GR + + PR LIL PTRELA QVAD  + Y +   L + ++ GG     Q + L
Sbjct: 79  TLATDGGRTQAKRPRGLILTPTRELAMQVADALDPYARILRLDMKVVCGGTSMPRQIEAL 138

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR+ D  +R   ++++++I V+DEAD+M DMGF+P +  I   VP   Q
Sbjct: 139 RNGVDVLVATPGRLRDLIDRKVCILDSVKIAVLDEADQMADMGFLPEVTEILDQVPPGGQ 198

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT+  E+  +   +       E  T            ++ +    K  A      
Sbjct: 199 RMLFSATLEKEIDTLVRRY-----LSEPVTHEVDPSAGAVTTMSHHVLVVKPKAKAPVTA 253

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    I F   +     +   L + G     +HG + Q++R  +L  FK G +  +
Sbjct: 254 AIAGQDGRSIAFVRTQLGADRVADQLREAGVRAEPLHGGMTQQARNAVLERFKGGGLDCL 313

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           VA+D+AARG+ +  V  V + D     ++Y+HR GRT RAGR G   TL      K +
Sbjct: 314 VATDVAARGIHVDGVDVVLHVDPARDGKDYLHRAGRTARAGRSGTVVTLALPHQRKTV 371


>gi|325090197|gb|EGC43507.1| ATP-dependent RNA helicase DBP8 [Ajellomyces capsulatus H88]
          Length = 539

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 122/390 (31%), Positives = 190/390 (48%), Gaps = 18/390 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL+P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F  P+L 
Sbjct: 110 SFASLGLAPWLVGSLSTMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAFAAPILQ 169

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                         +IL PTRELA Q+ +  +      +L   L+ GG     Q   L +
Sbjct: 170 KW---AEDPFGIFAVILTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIALSQ 226

Query: 122 GADVLICTPGRILDHFN----RGKLLMNNIEILVIDEADRMLDMG---FIPYIQNITSLV 174
              ++I TPGR+ DH           +N   ++V DEADR+L  G    +P ++   S +
Sbjct: 227 RPHIVIATPGRLADHITSSGADTICGLNRTRVVVFDEADRLLASGPGSMLPDVETCLSTL 286

Query: 175 PFTRQTLL--FSATMTDEL-----QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           P +       F+AT+T E+          N L            ++              
Sbjct: 287 PPSTARQTLLFTATVTPEVRALKSMPRPANKLPIFVTEVSTENKASIPPTLKQTYLQVPL 346

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             ++  L   +  + ++ K  IIFCN+ K    +   L + G  V ++H  + Q  R   
Sbjct: 347 THREAFLHTLISTAANSQKPAIIFCNRTKTADLVERMLRRLGHRVTSLHSLLPQSERTAN 406

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           LS F+    +++VA+D+AARGLDIP V  V NFDVP   ++Y+HR+GRT RAGR G+A T
Sbjct: 407 LSRFRASAARILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGREGEAVT 466

Query: 348 LVAKEDIKHIDAIEKLIEKK-VDWLNGDLS 376
           LV + D++ + AIE  + ++ V+W    +S
Sbjct: 467 LVGQRDVQLVLAIEDRVGREMVEWKEEGVS 496


>gi|229019510|ref|ZP_04176327.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1273]
 gi|229025752|ref|ZP_04182153.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1272]
 gi|228735552|gb|EEL86146.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1272]
 gi|228741766|gb|EEL91949.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1273]
          Length = 436

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 205/378 (54%), Gaps = 12/378 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L 
Sbjct: 5   TFTQYDFKPFLIDAVRELRFSEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLN 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNF----EKYGKNYNLTVALLIGGIPFEAQNK 117
            ++  R  V++    I  PTRELA Q+ +      +   ++  +T   LIGG   +   +
Sbjct: 65  RIDASREEVQLV---ITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIE 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL++   +++ TPGRI D      L +     +++DEAD MLDMGFI  +  I   +P  
Sbjct: 122 KLKKQPHIVVGTPGRIKDLVEEKALFVYKANTIIVDEADLMLDMGFIQDVDKIAGRMPKN 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +     +    L +
Sbjct: 182 LQMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSRH---RNKIELVK 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q      I+F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 239 NMLLQFKPYLAIVFTNTKKKADEVADGLAERGLKVGRIHGDLSPRDRKKMMKQVRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|196248942|ref|ZP_03147642.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
 gi|196211818|gb|EDY06577.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
          Length = 436

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 133/441 (30%), Positives = 214/441 (48%), Gaps = 16/441 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P V+ A+    + KPT IQ + IP  L+   + G +QTGTGKT +++LP++ 
Sbjct: 5   QFTRFPFQPFVIEAIQALRFYKPTEIQERIIPKALRGESMVGQSQTGTGKTHAYLLPIIE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVAD----NFEKYGKNYNLTVALLIGGIPFEAQNK 117
            ++  RA V+     I  PTRELA Q+        +   K+  +     IGG   +   +
Sbjct: 65  KIDPERAEVQAV---ITAPTRELATQIYHETLKITKFCPKDRMIVARCFIGGTDKQKALE 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL     ++I TPGRI D      L ++    LV+DEAD MLDMGFI  +  I + +P  
Sbjct: 122 KLHVQPHIVIGTPGRINDFIREQALDVHTACTLVVDEADLMLDMGFITDVDQIAARMPKE 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+ ++L+   + +++NP  I+V    +  + IEH          ++   L  
Sbjct: 182 LQMLVFSATIPEKLKPFLKKYMENPTFIQVEPKQTANKNIEH---VLIPLRGREKVKLLY 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         I+F N +K    +   L +QG  V  +HG++  R R K+++  ++   Q
Sbjct: 239 DVLVSYNPYLAIVFVNTRKRADEVADQLAEQGLKVGVLHGDLTPRERKKMMNQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N+++P+  + YIHR GRT RAG  G A T+    D   I
Sbjct: 299 YVVATDLAARGIDIEGVSHVINYELPDDLQFYIHRAGRTARAGYSGIAATIYEPTDQDAI 358

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
             +EK+    V  D + G+   L P     +      + K + +        + K+    
Sbjct: 359 ARLEKMGISFVHRDLVRGEWKELPPW----NRRSKRASEKEDDLALLVAKLKKAKQVKPG 414

Query: 416 QKSHIPLKESEKISKLQQDIQ 436
            K  +  +  +K  +L +  +
Sbjct: 415 YKKKLRAELEKKKKRLSRFKK 435


>gi|110802751|ref|YP_698816.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens SM101]
 gi|110683252|gb|ABG86622.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens SM101]
          Length = 405

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 119/374 (31%), Positives = 204/374 (54%), Gaps = 8/374 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           MD F  LGLS +V+ +++  G  +PT IQ K IP +L   +V G A+TGTGKT +++LP+
Sbjct: 1   MDKFLKLGLSEEVLKSLVGLGIEEPTDIQEKAIPEILNGKNVIGKAETGTGKTLAYLLPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRE--LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +  ++  +  ++     IL PT E  +      N  K G    +T   L+G    + Q +
Sbjct: 61  IEKIDDSKNEMQAI---ILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQME 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+    +L+ T GRIL+  N+ K+  N I+ +VIDE D++LD   I  ++++    P  
Sbjct: 118 KLKNKPHILVGTTGRILELINKKKITTNTIKTIVIDEGDKLLDFINIKDVKSVVKSCPRD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSATM ++  + ++  +   + I+    +   E IEH +     +       L++
Sbjct: 178 TQKLIFSATMNEKALENADELIGTSELIQAKAANKVNENIEHGYFQVELRDK--IDFLRK 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ +    K  I+F N   NV N+   L+       ++HG+ ++  R K L +F+ G  +
Sbjct: 236 LIHAIGDEKKIIVFINNSYNVHNVIQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAK 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ SD++ARGLDI    H+ N D+P  ++NY+HR+GR GRAG  G A++L   ++ K I
Sbjct: 296 VLITSDVSARGLDIKGATHIVNLDIPMNSQNYLHRVGRVGRAGEKGFAYSLADYKEEKII 355

Query: 358 DAIEKLIEKKVDWL 371
              E+ ++ K+  +
Sbjct: 356 VKCERQLKIKIPRV 369


>gi|71423483|ref|XP_812479.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70877262|gb|EAN90628.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 848

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 106/362 (29%), Positives = 170/362 (46%), Gaps = 4/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS +    +   GY + TPIQ   + L L  +DV G A+TG+GKT  FV+P+L  
Sbjct: 70  FNQLPLSQRTQLGLERGGYKRMTPIQSDALHLALAGYDVLGAAKTGSGKTLCFVVPVLER 129

Query: 63  LEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   +    M     +L PTRELA Q+    +  G  +  + ALL GG   E + K+L  
Sbjct: 130 LFVEQWDTAMGVGALVLSPTRELALQIFKVLQLVGYKHTHSAALLTGGRDVEEERKRLAA 189

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + ++      +    +   L+ +N+++ V+DEADR+LDMGF   I  I   +P  RQTL
Sbjct: 190 ISVIVGTPGRVLHHLEDDADLVTDNMQLFVMDEADRLLDMGFRDAICGIMRHLPTARQTL 249

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T ++Q +++  L+N + +  +  ++       C      +  +K   L   L+ 
Sbjct: 250 LFSATQTTDVQMLAQMSLRNQRYVTTHASTAAPTPATLCQNFIVVELHRKLDALLMFLKR 309

Query: 242 QDTMKNGIIFCNQKKNVVNL---CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               K  +      +           L+K       +   + Q  R ++   F      +
Sbjct: 310 HPNDKTVVFVSTCNQVRYMYLAFSKILKKMRIPSMCLTSKMKQFRREEVFLTFCRCKAAV 369

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +  +D+AARGLD P V     +D P+ A+ YIHR GRT RAG  G +   +  ++   + 
Sbjct: 370 LFCTDIAARGLDFPLVHWAVQYDCPDSAQTYIHRAGRTARAGARGVSLLFLTPQETPMLS 429

Query: 359 AI 360
            +
Sbjct: 430 FL 431


>gi|71418407|ref|XP_810839.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70875435|gb|EAN88988.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 895

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 106/362 (29%), Positives = 170/362 (46%), Gaps = 4/362 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS +    +   GY + TPIQ   + L L  +DV G A+TG+GKT  FV+P+L  
Sbjct: 119 FNQLPLSQRTQLGLERGGYKRMTPIQSDALHLALAGYDVLGAAKTGSGKTLCFVVPVLER 178

Query: 63  LEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   +    M     +L PTRELA Q+    +  G  +  + ALL GG   E + K+L  
Sbjct: 179 LFVEQWDTAMGVGALVLSPTRELALQIFKVLQLVGYKHTHSAALLTGGRDVEEERKRLAA 238

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + ++      +    +   L+ +N+++ V+DEADR+LDMGF   I  I   +P  RQTL
Sbjct: 239 ISVIVGTPGRVLHHLEDDADLVTDNMQLFVMDEADRLLDMGFRDAICGIMRHLPTARQTL 298

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T ++Q +++  L+N + +  +  ++       C      +  +K   L   L+ 
Sbjct: 299 LFSATQTTDVQMLAQMSLRNQRYVTTHASTAAPTPATLCQNFIVVELHRKLDALLMFLKR 358

Query: 242 QDTMKNGIIFCNQKKNVVNL---CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
               K  +      +           L+K       +   + Q  R ++   F      +
Sbjct: 359 HPNDKTVVFVSTCNQVRYMYLAFSKILKKMRIPSMCLTSKMKQFRREEVFLTFCRCKAAV 418

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +  +D+AARGLD P V     +D P+ A+ YIHR GRT RAG  G +   +  ++   + 
Sbjct: 419 LFCTDIAARGLDFPLVHWAVQYDCPDSAQTYIHRAGRTARAGARGVSLLFLTPQETPMLS 478

Query: 359 AI 360
            +
Sbjct: 479 FL 480


>gi|330465173|ref|YP_004402916.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
 gi|328808144|gb|AEB42316.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
          Length = 572

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 133/426 (31%), Positives = 209/426 (49%), Gaps = 13/426 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGL   +  A+   G   P  IQ  T+P  L   DV G  QTG+GKT +F LP+L
Sbjct: 34  ITFEALGLPEPLARALARQGITTPFEIQRATVPDALAGRDVLGRGQTGSGKTLAFGLPLL 93

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +  G   R   PR LIL PTRELA QV D     G+   + +   +GG+P++ Q   L
Sbjct: 94  ARIADGDRARPSRPRALILVPTRELAMQVNDALAPLGRTIGVFLKTAVGGVPYDRQIDAL 153

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +V++ TPGR+ D   RG   ++++EI V+DEAD+M DMGF+P + ++ +  P   Q
Sbjct: 154 RRGVEVMVATPGRLADLIERGICKLDDVEITVLDEADQMADMGFLPEVTDLLAKTPAHAQ 213

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT+  ++  + + F+ +P        ++   T++H  +                 
Sbjct: 214 RLLFSATLDADVDALVQRFMTDPVTHSTAPATAAVSTMDHHLLLIPPSDKFPVTASIA-- 271

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    I+F   +  V  L   L   G     +HG   QR R + L+ F+EG   ++
Sbjct: 272 ---ARAGRTIVFARTQLGVDRLVSQLAAVGVRAGGLHGGKTQRMRTRTLAEFREGRTNVL 328

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+ +  V  V + D P   ++Y+HR GRT RAG  G   TLV  +  +   A
Sbjct: 329 VATDVAARGIHVDGVTLVLHVDPPKDPKDYLHRAGRTARAGETGAVATLVLPKQRRTTLA 388

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKST--GFDRRKKNYS 414
           +  L +  V      + + +P L ++  A+       R     P++S+  G  RR    +
Sbjct: 389 M--LEKAGVQPAETRVRAGDPALTELTGAREPSGVPVRDEPEAPRRSSRPGGPRRFDGPT 446

Query: 415 SQKSHI 420
           +++ + 
Sbjct: 447 TERRYR 452


>gi|163942044|ref|YP_001646928.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|229013506|ref|ZP_04170641.1| ATP-dependent RNA helicase yqfR [Bacillus mycoides DSM 2048]
 gi|229061981|ref|ZP_04199307.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH603]
 gi|229135112|ref|ZP_04263914.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST196]
 gi|229169035|ref|ZP_04296751.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH621]
 gi|163864241|gb|ABY45300.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
 gi|228614444|gb|EEK71553.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH621]
 gi|228648341|gb|EEL04374.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST196]
 gi|228717290|gb|EEL68963.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH603]
 gi|228747787|gb|EEL97655.1| ATP-dependent RNA helicase yqfR [Bacillus mycoides DSM 2048]
          Length = 436

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 120/378 (31%), Positives = 206/378 (54%), Gaps = 12/378 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ AV +  + +PT IQ K  P+V +   + G +QTG+GKT +++LP L 
Sbjct: 5   TFTQYDFKPFLIDAVRELRFTEPTGIQKKIFPVVKKGVSIIGQSQTGSGKTHAYLLPTLN 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNF----EKYGKNYNLTVALLIGGIPFEAQNK 117
            ++  R  V++    I  PTRELA Q+ +      +   ++  +T   LIGG   +   +
Sbjct: 65  RIDASREEVQLV---ITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIE 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL++   +++ TPGRI D      L +   + +++DEAD MLDMGFI  +  I + +P  
Sbjct: 122 KLKKQPHIVVGTPGRIKDLVEEKALFVYKADTIIVDEADLMLDMGFIQDVDKIAARMPKN 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +L+   + +++NP+ I +N     A  I+H  V +     +    L +
Sbjct: 182 LQMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIDHYLVPSRH---RNKTELVK 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q      I+F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 239 NMLLQFKPYLAIVFTNTKKKADEVADGLAERGLKVGRIHGDLSPRDRRKMMKQVRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P   + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPPDLDFFVHRVGRTARAGHSGIAVTIYDPANEEAL 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ +++ + DL
Sbjct: 359 DSLEK--QRHIEFKHVDL 374


>gi|295837571|ref|ZP_06824504.1| ATP-dependent RNA helicase [Streptomyces sp. SPB74]
 gi|295826577|gb|EDY45280.2| ATP-dependent RNA helicase [Streptomyces sp. SPB74]
          Length = 738

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 136/450 (30%), Positives = 214/450 (47%), Gaps = 9/450 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGL   +V  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP+L 
Sbjct: 54  TFAELGLPEGIVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLA 113

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L  G    + PR +IL PTRELA QVAD  + YG   +L + ++ GG     Q   LER
Sbjct: 114 QLAGGFTDKKKPRGVILTPTRELAMQVADALQPYGDVLDLRMKVVCGGTSMGNQIYALER 173

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+L+ TPGR+ D  NRG   +  ++I ++DEAD+M D+GF+P +  +   VP   Q +
Sbjct: 174 GVDILVATPGRLRDLINRGACSLEKVQIAILDEADQMADLGFMPEVTELLDQVPAGGQRM 233

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ +E+  + + +L NP   EV+       T+ H  +       K           
Sbjct: 234 LFSATLENEIDALVKRYLVNPVAHEVDAAQGAVTTMSHHILIV-----KPRDKAPVTAAI 288

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIF   +     +   L   G    A+HG + Q +R ++L++FK+G +  +VA
Sbjct: 289 ASRKGRTIIFVRTQLGADRVAEQLRDAGVKADALHGGMTQGARTRVLADFKDGYVNALVA 348

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L      + I  + 
Sbjct: 349 TDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSLSLPHQRRQIFRLM 408

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
           +             +  +  L +I  A+     +     Q +   +R  ++ + +     
Sbjct: 409 EDAGVDAARHQIGGAVFDAELAEITGARSMTEVQAESAGQSAKQAEREVEDLTRELERAK 468

Query: 422 LKESEKISKLQQDIQENDADSLGFRGNMPA 451
            +  E  ++  + +     +    RG  P 
Sbjct: 469 RRAGEYRAEADRLVARAARE----RGEEPP 494


>gi|306835508|ref|ZP_07468523.1| ATP-dependent RNA helicase DeaD [Corynebacterium accolens ATCC
           49726]
 gi|304568617|gb|EFM44167.1| ATP-dependent RNA helicase DeaD [Corynebacterium accolens ATCC
           49726]
          Length = 446

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 125/367 (34%), Positives = 190/367 (51%), Gaps = 3/367 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG++ ++   + D G  +   IQ  T+P+ L   D+ G A+TG GKT  F +P+L 
Sbjct: 10  TFAELGVAAEICDGLADRGIARTFAIQELTLPIALNGQDLIGQARTGMGKTFGFGVPLLD 69

Query: 62  ILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +            PR LI+ PTRELA QV  + +    +  + +A + GG P+E Q K 
Sbjct: 70  RVFDDADIAPLDGTPRALIVVPTRELAQQVTADLQDAAAHLPVRLASIYGGRPYEEQIKL 129

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+RG DV+I TPGR+LD   RG L++ ++ I+V+DEAD MLD+GF+P I+ I   +    
Sbjct: 130 LQRGVDVVIGTPGRLLDLHERGDLVLRHVAIVVLDEADEMLDLGFLPSIEAILEALDGNA 189

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
              +  +               N          +   T E     T+  +      +   
Sbjct: 190 HQTMLFSATMPGAILNLSRQFMNKPVHIRAESEADEVTHETTRKVTFQAHRMDKVPVIAH 249

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +         IIF   K++   L   L ++GF V A+HG++ Q+SR K L  F+ G + +
Sbjct: 250 ILQAQGRGRSIIFTRTKRSAAQLADDLAERGFHVGAVHGDLGQKSREKSLQAFRSGEVDI 309

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ DV HV N+ VP+    +IHRIGRTGRAG  G A TLV  +++    
Sbjct: 310 LVATDIAARGIDVDDVTHVINYQVPDDPMTFIHRIGRTGRAGHTGTAVTLVGYDELAKWR 369

Query: 359 AIEKLIE 365
            I   + 
Sbjct: 370 VINDELG 376


>gi|228965117|ref|ZP_04126213.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228794550|gb|EEM42060.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 389

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 101/367 (27%), Positives = 186/367 (50%), Gaps = 11/367 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P +  A   AG+ + T IQ + IP +L+  DV   + TGTGKT +++LP+L  +      
Sbjct: 7   PFLQEAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI---NPE 63

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           V+ P+ ++L PTREL  Q+ +  +K+     ++ A LIGG   + Q +KL++   V++ +
Sbjct: 64  VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLKKHPRVIVGS 123

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGRIL+     KL M+ ++ +V DE D+++    +  +Q++       RQ + FSAT+T 
Sbjct: 124 PGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQLVFFSATITK 183

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
             +  + +    P+ + +    S +         TY    ++                 +
Sbjct: 184 AAEDAARDLAVEPQLVRITRAESKSLVE-----HTYIICERREKNDYVRRIMHMGDVKAV 238

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
            F N    +  +   L+ +     A+H    ++ R   +  F+ G +++++A+D+AARG+
Sbjct: 239 AFLNDPFRLDEITQKLQFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGI 298

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE---K 366
           DI D+ HV + ++P+  + YIHR GRTGR G+ G   +LV +++ + +    K +     
Sbjct: 299 DIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERKLLQFAKKLGIVFT 358

Query: 367 KVDWLNG 373
           K +  NG
Sbjct: 359 KQEMFNG 365


>gi|20072320|gb|AAH26492.1| Ddx46 protein [Mus musculus]
          Length = 626

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 131/414 (31%), Positives = 218/414 (52%), Gaps = 15/414 (3%)

Query: 36  LQRHDVCGIAQTGTGKTASFVLPMLTILEKGR--ARVRMPRTLILEPTRELAAQVADNFE 93
           +   D+ GIA+TG+GKT +F+LPM   +   R       P  +I+ PTRELA Q+    +
Sbjct: 1   MSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECK 60

Query: 94  KYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH---FNRGKLLMNNIEIL 150
           K+ K   L V  + GG     Q  +L+RGA++++CTPGR++D     +     +  +  +
Sbjct: 61  KFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYV 120

Query: 151 VIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           V+DEADRM DMGF P +  I   V   RQT++FSAT    ++ ++   L  P  ++V   
Sbjct: 121 VLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGR 180

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
           S     +E   +    +       L +LL       + IIF +++++   L   L +  +
Sbjct: 181 SVVCSDVEQQVIVIEEEKK--FLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASY 238

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
              ++HG IDQ  R  I+++FK GT +L+VA+ +AARGLD+  +  V N+  PN  E+Y+
Sbjct: 239 PCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYV 298

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           HR GRTGRAG  G A+T + ++  ++   I K +E     L+G  +++ P LEK+     
Sbjct: 299 HRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFK 351

Query: 391 NHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLG 444
           +  +    I +KS+GF  +   +   +  +   E +K+ K    +Q++D +   
Sbjct: 352 DQQKAEGKIIKKSSGFSGKGFKFDETEQAL-ANERKKLQKAALGLQDSDDEDAA 404


>gi|221114886|ref|XP_002154660.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 393

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 113/382 (29%), Positives = 181/382 (47%), Gaps = 14/382 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LSP V+  +   G+ +P+PIQ+++IPL     D+   A++GTGKT  F +  L  
Sbjct: 19  FESLLLSPDVLLGLKAVGFDRPSPIQLQSIPLAKCGADLVCQAKSGTGKTCVFAVTALES 78

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +    ++++    L+L PTRE+A Q+ D   K G+        L  G      +    + 
Sbjct: 79  INLSLSKLQ---VLVLAPTREIAHQIHDVIMKIGQKMKSLKCSLFIGGMPIQHDVDSIKS 135

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             + I TPGRI        +L  +I + V+DEAD++L+ GF   I  I S +P  +Q L 
Sbjct: 136 CHIAIGTPGRIKSLIESNIMLTKSIRLFVLDEADKLLEEGFQEQINWIYSTLPKQKQVLA 195

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238
            SAT    L      ++  P  + +NT     + +   F              ++     
Sbjct: 196 LSATYPQHLADYLSIYMNEPIHVRINTDDLNLKGVRQMFTTVKHHALPNLLYNEKCEALL 255

Query: 239 -LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      ++F N +    +LC  L K+G+    I G   Q +R+K +S  K  + +
Sbjct: 256 NCIENVPFHQCMVFSNYQSRASHLCTLLNKKGWPCTFIAGIQLQPTRLKAISELKSYSCR 315

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +DL+ARG+D   V  V N D+P   E Y+HR+GR GR G +G A ++V+  D    
Sbjct: 316 ILVTTDLSARGIDCDKVNLVVNLDMPWDTETYLHRVGRAGRFGTYGLAISIVSGAD---- 371

Query: 358 DAIEKLIEKKVDWLNGDLSSLN 379
             I+KLIE   + +N D+  L 
Sbjct: 372 -EIKKLIEVS-ENINCDIVQLP 391


>gi|169343937|ref|ZP_02864931.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens C str. JGS1495]
 gi|169297939|gb|EDS80031.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens C str. JGS1495]
          Length = 405

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 119/374 (31%), Positives = 204/374 (54%), Gaps = 8/374 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           MD F  LGLS +V+ +++  G  +PT IQ K IP +L   +V G A+TGTGKT +++LP+
Sbjct: 1   MDKFLKLGLSEEVLKSLVGLGIEEPTDIQEKAIPEILSGKNVIGKAETGTGKTLAYLLPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRE--LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +  ++  +  ++     IL PT E  +      N  K G    +T   L+G    + Q +
Sbjct: 61  IEKIDDSKNEMQAI---ILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQME 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+    +L+ T GRIL+  N+ K+  N I+ +VIDE D++LD   I  ++++    P  
Sbjct: 118 KLKNKPHILVGTTGRILELINKKKITTNTIKTIVIDEGDKLLDFINIKDVKSVVKSCPRD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSATM ++  + ++  +   + I+    +   E IEH +     +       L++
Sbjct: 178 TQKLIFSATMNEKALETADELIGTSELIQAKAANKVNENIEHGYFQVELRDK--IDFLRK 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ +    K  I+F N   NV N+   L+       ++HG+ ++  R K L +F+ G  +
Sbjct: 236 LIHAIGDEKKIIVFINNSYNVHNVIQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAK 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ SD++ARGLDI    H+ N D+P  ++NY+HR+GR GRAG  G A++L   ++ K I
Sbjct: 296 VLITSDVSARGLDIKGATHIVNLDIPMNSQNYLHRVGRVGRAGEKGFAYSLADYKEEKII 355

Query: 358 DAIEKLIEKKVDWL 371
              E+ ++ K+  +
Sbjct: 356 VKCERQLKIKIPRV 369


>gi|146182736|ref|XP_001025134.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|146143751|gb|EAS04889.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 476

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 105/439 (23%), Positives = 181/439 (41%), Gaps = 7/439 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F D  L   ++ +V +AG+ +P+ +Q + IP  +   DV   A+ GTGKTA FVL  + 
Sbjct: 39  SFNDFSLKQDLLRSVKEAGFERPSEVQHQCIPNAIHGKDVLCQAKAGTGKTAVFVLSVLN 98

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            + +  +    +      E   ++  +     +            +   +       K  
Sbjct: 99  QLPDDAKPFSCLVLCHTRELAFQIKNEFKRLGKFTNFKVKAVYGGVEESVDIHTLKTKKP 158

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
                       ++          N    ++ +    +        +QNI   +P  +Q 
Sbjct: 159 HILVATPGRCLSLIKAKPSVIETQNIEYFIIDECDRVLSSNKMRSDVQNIFYELPRKKQV 218

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FS TM+DE +K    FLQ+   I      ++   +            K+   + + L 
Sbjct: 219 MMFSGTMSDESKKTCRKFLQDQIEIF--VEDNSKLVLHGLEQYHIKIEEKQKISVLRQLL 276

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      IIF N++     L   L  +G     I+ N+DQ  R KI S FKEG  +++V
Sbjct: 277 DQGNYNQVIIFVNKQDRAKYLSKYLTDKGHDNAFIYRNLDQSERTKIYSEFKEGKNRVLV 336

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           A+DL  RG+DI  V  V NFD+P   E+Y+HR+GR GR    G+A + +  KED K +  
Sbjct: 337 ATDLVGRGIDIERVNLVINFDMPQITEDYMHRVGRAGRFETKGQAISFISTKEDEKVLAE 396

Query: 360 IEKLIEKKVDWLNGDLS---SLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           I+     ++   N       S+N      +   ++   +N+ +P K T     +KN +  
Sbjct: 397 IQSTFSTQIKEYNLKQESQLSINIYYSLCNSFLNSSQLQNHFLPHKQTNDSSNQKNQNRI 456

Query: 417 KSHIPLKESEKISKLQQDI 435
           K       S++ + +Q  I
Sbjct: 457 KRRNSTYFSQEFTNIQNFI 475


>gi|28211493|ref|NP_782437.1| ATP-dependent RNA helicase [Clostridium tetani E88]
 gi|28203934|gb|AAO36374.1| ATP-dependent RNA helicase [Clostridium tetani E88]
          Length = 386

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 111/370 (30%), Positives = 200/370 (54%), Gaps = 8/370 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL+  ++  +   G  KPT IQIKTIPL L+  DV G + TG+GKT +++LP+  
Sbjct: 4   SFDKLGLNQNLIEGLKQEGINKPTDIQIKTIPLALENKDVIGQSPTGSGKTLAYLLPIFQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKL 119
            ++  +  ++     IL PT ELA Q+    +    N    +T   +IG    + Q +KL
Sbjct: 64  KIDTSKREMQAI---ILAPTHELAMQINKEIQLLSGNSKVSVTSTPIIGNANVKRQIEKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    V++ + GRIL+   + K+  + I+ +V+DE D++LD   +  I+++       RQ
Sbjct: 121 KEKPHVIVGSSGRILELIKKKKISAHTIKTIVVDEGDKLLDHSNLSSIKDVIKTTMRDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            ++FSAT+ ++   V++  +++ + I+  + ++    I H +  +     +    + + L
Sbjct: 181 LMVFSATINEKTLNVAKGLMKDAEFIKAKSENAINPNITHMYFISDQ---RDKIEVLRKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +    +  I+F N+      +   L+        IHG+  ++ R K L  F+ G +QL+
Sbjct: 238 VASINPEKAIVFINKSDETEIITAKLKYHKIKAEGIHGSSSKKDRQKALEGFRSGKLQLL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASD+AARGLDI +V H+FN D+P+  + Y+HR+GRT R G  G A ++V  +++  I  
Sbjct: 298 VASDIAARGLDIKNVSHIFNLDLPSDPKEYLHRVGRTSRTGETGTAISIVTDKELSLIKK 357

Query: 360 IEKLIEKKVD 369
            E+  + +++
Sbjct: 358 YERDFKIEIN 367


>gi|302791241|ref|XP_002977387.1| hypothetical protein SELMODRAFT_232961 [Selaginella moellendorffii]
 gi|300154757|gb|EFJ21391.1| hypothetical protein SELMODRAFT_232961 [Selaginella moellendorffii]
          Length = 413

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 137/402 (34%), Positives = 210/402 (52%), Gaps = 16/402 (3%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMP----R 74
           +G+ KP+PIQ  + P +L   D+ GIA TG+GKT +F +P L  +   + + +      R
Sbjct: 5   SGFEKPSPIQAHSWPFLLDGRDLIGIAATGSGKTLAFGVPALVHILNHKKKEKKHSKGSR 64

Query: 75  TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134
            L+L PTRELA Q+A   E+ G +  + V  L GG     Q   L  G D+++ TPGR+ 
Sbjct: 65  CLVLSPTRELAQQIAAVLEEAGASCGVKVVCLYGGSSKGPQYSSLRSGCDIVVATPGRLQ 124

Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194
           D  + G   ++ I  LV+DEADRMLD+GF P ++ I S +P  RQT++FSAT    +QK+
Sbjct: 125 DFVDEGVCKLDQITYLVLDEADRMLDLGFEPAVRAIVSHIPQERQTIMFSATWPTSVQKL 184

Query: 195 SENFLQN-----PKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ---LLQSQDTMK 246
           ++ F+Q+        +++   S                  K      Q    L  +    
Sbjct: 185 AQEFIQDASPELISFLQITVGSEDLSANHDVTQIVEVLDDKSRDRRLQELLRLYHKTKRN 244

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             ++F   KK  V + + L+KQG++V  IHG+  Q++R + LS FK+G+  L++A+D+AA
Sbjct: 245 RVLVFVLYKKEAVRVENFLQKQGWNVTGIHGDKSQQARNQALSAFKDGSHPLLIATDVAA 304

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDIPDV  V N+  P   E+Y+HRIGRTGRAG+ G A T     D      +  ++ +
Sbjct: 305 RGLDIPDVEFVINYSFPLTTEDYVHRIGRTGRAGKKGTAHTFFTTADKARAGELVNILRE 364

Query: 367 KVDWLNGDL----SSLNPPLEKIDIAQHNHARKNNPIPQKST 404
               +  +L    + +     K+  A       + P  QK T
Sbjct: 365 ARQIVPEELLKFGAHVKKKESKLYGAHFRELAADAPKAQKIT 406


>gi|268554368|ref|XP_002635171.1| Hypothetical protein CBG11408 [Caenorhabditis briggsae]
          Length = 565

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 122/386 (31%), Positives = 195/386 (50%), Gaps = 10/386 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F +  L  +V   +    + KPT IQ  + P+ +   D+  IA+TG+GKT +F+LP   
Sbjct: 131 EFNEAPLPGQVHELLYGK-FQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALV 189

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +  R R   P  L+L PTRELA QV +    +  +  L +  L GG     Q + L
Sbjct: 190 HITKQPHRQRGEGPSVLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDL 249

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG D+ + TPGR+LD  + G   M     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 250 ERGVDIAVATPGRLLDFLDNGTTNMKRCSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 309

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQL 238
           TL+FSAT   E++ ++ +F ++   + V +    A       V    +++K+   +    
Sbjct: 310 TLMFSATWPKEVRSLASDFQKDAAFLNVGSLELAANHNITQVVDVLEEHAKQAKLMELLN 369

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     IIF   K+    L  ++ + G+    IHG+ +Q  R  +L  FK G + +
Sbjct: 370 HIMNQKECKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKMPI 429

Query: 299 MVASDLAAR------GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           ++A+D+AAR       + + D+  V N+D PN +E+Y+HRIGRTGR  + G A+T     
Sbjct: 430 LLATDVAARGLEFWVQVHVDDIKFVINYDYPNNSEDYVHRIGRTGRRDKKGTAYTFFTHT 489

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSL 378
           +      + K++++    +   L  +
Sbjct: 490 NASKAKDLLKVLDEAKQNVPQALRDM 515


>gi|268566495|ref|XP_002639737.1| Hypothetical protein CBG12465 [Caenorhabditis briggsae]
 gi|187029586|emb|CAP31441.1| hypothetical protein CBG_12465 [Caenorhabditis briggsae AF16]
          Length = 542

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 119/407 (29%), Positives = 205/407 (50%), Gaps = 7/407 (1%)

Query: 2   DFADL--GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L   ++  ++ +V   G+   T IQ KTI  +L+  DV   A+TG+GKT +F+LP 
Sbjct: 66  TFASLDGKVNSNLLKSVQRLGFTTLTEIQAKTIDPLLEGKDVLASAKTGSGKTLAFLLPA 125

Query: 60  LTILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + +L K   +       +I+ PTREL+ Q      +  +  NLT  L++GG    A+  K
Sbjct: 126 IELLHKLNWKQHNGTGVIIVSPTRELSMQTYGVLTELLEGSNLTFGLVMGGSNRSAEKDK 185

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G  +L+ TPGR+LDH      L+ N++ L+IDEADR+LD+GF   +Q +   +P  R
Sbjct: 186 LAKGVSILVATPGRLLDHLQNDNFLVRNLKCLIIDEADRILDIGFEIEMQQVLRHLPKQR 245

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q++LFSAT + ++ ++ +  L +          +   T+E          S K  LL   
Sbjct: 246 QSMLFSATHSPKVDELVKLALHSNPVRVSVNEKAEEATVEGLQQGYIVAPSDKRLLLLFT 305

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  ++F +   +V      L        +IHG   Q+ R      F +    +
Sbjct: 306 FLKKNKTKKVMVFFSSCNSVKFHHELLNYIDVPCMSIHGKQKQQKRTSTFFTFCQAESGI 365

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  +D P+    YIHR+GRT R     GKA  ++  E++  +
Sbjct: 366 LLCTDVAARGLDIPAVDWIVQYDPPDEPREYIHRVGRTARGTNGSGKALLVLRPEELGFL 425

Query: 358 DAIE--KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
             ++  K+   + ++    ++++   LE + I+++ +  K+     K
Sbjct: 426 RYLKAAKVTLNEFEFSWNKVANIQTQLESL-ISKNYYLNKSAKEAYK 471


>gi|14334882|gb|AAK59619.1| putative RNA helicase [Arabidopsis thaliana]
          Length = 563

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 124/476 (26%), Positives = 205/476 (43%), Gaps = 31/476 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F    LSP  +  + DAG+   T +Q  T+PL+LQ  ++   A+TGTGKT +F+LP    
Sbjct: 82  FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKNILAKAKTGTGKTVAFLLPSIEA 141

Query: 59  -MLTILEKGRARVRMPRTLILEPTRE--LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            +         R      L++ PTRE    A    N             ++ G      Q
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQ 201

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIE---ILVIDEADRMLDMGFIPYIQNITS 172
            +  +    +L+ TPGR+ DH +        +    +LV+DEAD +LDMGF   I+ I +
Sbjct: 202 RRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIA 261

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY----AQY 228
            VP  RQT LFSAT++DE++++    L+              ET +            ++
Sbjct: 262 AVPKQRQTFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQMYMIASLDRH 321

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
                 L +   + +     IIFC        +   L K   +V  IH    Q  R ++ 
Sbjct: 322 FSLLYGLLKKHITDNVGYKVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVS 381

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             F++    ++V SD++ARG+D PDV  V    +P+  E YIHR+GRTGR G+ G+   L
Sbjct: 382 DEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLL 441

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           +A  +   + +++         L    SSL PP++   + +         +  K   +  
Sbjct: 442 LAPWEEYFLSSVKD--------LPITKSSL-PPIDHEAVKKVQKGLIQVEMTNKEAAYQA 492

Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDK 464
               Y SQK     +++ ++ +L  +   +         ++P  +     GK+  K
Sbjct: 493 WLGYYKSQKKI--ARDTTRLVELANEFSRS------MGLSIPPAIPVNILGKMGLK 540


>gi|325919452|ref|ZP_08181477.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
 gi|325550072|gb|EGD20901.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
          Length = 438

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 131/423 (30%), Positives = 207/423 (48%), Gaps = 13/423 (3%)

Query: 1   MDFADLGLSPKVV----CAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFV 56
           M F  L LSP+++     A+  AG+  PTPIQ + I  +LQ  D+  +AQTG+GKT ++ 
Sbjct: 10  MSFDHLDLSPQLLPAFTAALARAGHHTPTPIQQQAIQPMLQGRDLIAMAQTGSGKTLAYA 69

Query: 57  LPMLTILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLT--VALLIGGIPFE 113
           LP+L                L+L PTRELAAQV D   +   +      +    GG    
Sbjct: 70  LPLLQQRCLAPETAPRVLGALVLVPTRELAAQVEDTLHQLAAHLPRRLKIVTATGGSSIN 129

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  GAD+++ TPGR+LD  +   L ++ +  LV+DEADR+L++GF   +  I +L
Sbjct: 130 PQLLALRGGADIVVATPGRLLDLVDHNALRLSEVATLVLDEADRLLELGFGAELDRILAL 189

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQ++LFSAT    +  +++  L++P RI   T  +T +          A  + +  
Sbjct: 190 LPAQRQSVLFSATFPPGIASLAKRRLRDPLRI---TIVATPDAAPAIEQRAIAVDAGQRT 246

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
            L + L  +    + ++F   +     +   L K G +   +HG + Q  R + L  FK+
Sbjct: 247 QLLRHLLQEHGWSHVLVFVASRHTAEKVAEKLTKTGINAQPLHGELSQGRRERTLYAFKQ 306

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
             +Q++VA+DLA RG+DI  +  V N+D+P    +Y HRIGRT RAG  G A + V+ E 
Sbjct: 307 REVQVLVATDLAGRGIDIDALPAVINYDLPRSTVDYTHRIGRTARAGASGVAISFVSAES 366

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
                 IEK    +V      ++   P L   D         +   P  + G   ++ + 
Sbjct: 367 QPQWRLIEKRQGLRVP--TSVVAGFEPTLAT-DAPATEKPNTDTRAPDDNGGIKGKRPSK 423

Query: 414 SSQ 416
             +
Sbjct: 424 KDK 426


>gi|311739803|ref|ZP_07713637.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304876|gb|EFQ80945.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 441

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 124/383 (32%), Positives = 191/383 (49%), Gaps = 12/383 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG++ ++   +   G  +   IQ  T+P+ L   D+ G A+TG GKT  F +P+L 
Sbjct: 10  SFAELGVAAEICDGLASRGITRTFAIQELTLPIALSGQDLIGQARTGMGKTYGFGVPLLD 69

Query: 62  ILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +            PR L++ PTRELA QV ++ +    +  + +A + GG P+E Q K+
Sbjct: 70  RVFDDADIDELDGTPRALVVVPTRELAQQVTEDLQVAATHLPVRLASIYGGRPYEEQIKQ 129

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DV+I TPGR++D   RG L ++ + ILV+DEAD MLD+GF+P ++ I   +    
Sbjct: 130 LNKGVDVIIGTPGRLIDLHERGNLQLDRVAILVLDEADEMLDLGFLPSVEAILKALDGNA 189

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
              +  +               +              T       T+  +      +   
Sbjct: 190 HQTMLFSATMPGAILTLARRFMDKPIHIRAESGEQDFTHSSTRKVTFQAHRMDKVAVVAH 249

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     IIF   K+    L   L ++GF V A+HG++ Q+SR K L  F+ G + +
Sbjct: 250 ALQAAGRGRTIIFARTKRAAAQLADDLARRGFHVGAVHGDLGQKSREKSLHAFRTGQVDI 309

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ DV HV N+ VP+    ++HRIGRTGRAG  G A T+V  +++    
Sbjct: 310 LVATDIAARGIDVDDVTHVINYQVPDDPMTFVHRIGRTGRAGHTGTAITMVGYDELGKWQ 369

Query: 359 AIEKLIEKKVDWLNGDLSSLNPP 381
            I        D L  DL   NPP
Sbjct: 370 VIN-------DEL--DLGEPNPP 383


>gi|227486921|ref|ZP_03917237.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227092995|gb|EEI28307.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 455

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 134/391 (34%), Positives = 208/391 (53%), Gaps = 4/391 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG++ ++  A+     V    IQ  T+P+ L+  D+ G A+TG GKT  F +P+L 
Sbjct: 9   TFTELGVAQEITDALAAQSIVDTFAIQALTLPIALEGRDLIGQARTGMGKTLGFGVPVLD 68

Query: 62  ILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +            PR LI+ PTREL  QV ++  +   N  + V  + GG P+E Q K 
Sbjct: 69  RIFDDADIEELDGTPRALIVVPTRELCVQVGEDLTRAAVNLPVRVTTIYGGTPYEEQEKA 128

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G D+++ TPGR++D +NRG+L +  + ILV+DEAD MLD+GF+P I+ I + +    
Sbjct: 129 LKDGTDLVVGTPGRLIDLYNRGELRLGTVRILVLDEADEMLDLGFLPAIEKIIAGITAEH 188

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATM D +  ++  F  N         S  AET        +  +      +   
Sbjct: 189 QTMLFSATMPDAILGLARGF-MNKPVHIRAEMSGEAETNATTKQVVFKSHRMDKVAVISR 247

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +         IIF   K++   +   L   GF V ++HG++ Q +R + L  F++G + +
Sbjct: 248 VLQARGRGRTIIFVRTKRSAAEVARDLAGAGFQVASVHGDMSQSARERSLQGFRDGVVDI 307

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI DV HV N+  P+    Y+HRIGRTGRAG  G A TLV  +++    
Sbjct: 308 LVATDVAARGIDIDDVTHVINYQTPDDELTYVHRIGRTGRAGHTGTAVTLVGYDELPKWK 367

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
            I   +    D L    S+     E+++I +
Sbjct: 368 LINDELGLGKDELLEWFSTSPELYEELEIPE 398


>gi|37677247|ref|NP_937643.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|37201792|dbj|BAC97613.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 436

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 141/424 (33%), Positives = 218/424 (51%), Gaps = 12/424 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS +++ A+    + KPT IQ   IP +L   D+  +A TG+GKT ++ LP+L
Sbjct: 25  MPFSTLSLSSELIHALPK-DFKKPTDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLL 83

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  +    IL PTRELA QV++   + G+   L    L GG+  E Q + L 
Sbjct: 84  EKLRVNPEQKAL----ILVPTRELATQVSEAINQVGQALGLNAVCLCGGVDKEQQLQALA 139

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ T GR++D  N G  L N    LV+DEADR+LDMGF P +QNI +     RQT
Sbjct: 140 TNPHILVATTGRLVDLANNGLDLSNI-HYLVLDEADRLLDMGFWPDVQNIAAQTSSQRQT 198

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT +DEL+  ++  +Q PK++  +  +ST + I             K  +      
Sbjct: 199 AMFSATFSDELKGKAKLLMQAPKQVAAHQENSTNQDIAETLYLVNKGSKTKALIEL---I 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     ++F   K+N   L   L K G S  A+HG+  Q  R + L+ FK G  Q+++
Sbjct: 256 QKNAWTQALVFIGAKENADGLAKKLNKAGISTNALHGDKSQAEREEALAQFKSGQTQVLI 315

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG  G A +LV   ++  + AI
Sbjct: 316 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVALSLVCHGEMDALSAI 375

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
             L ++++     DL    P  +K    +   A ++    +++      K+  S  K   
Sbjct: 376 RHLTQRELPV--QDLEGF-PVTDKPSTGESKRAPRDKKANRRTQNKKSVKQFQSKAKRPA 432

Query: 421 PLKE 424
           P  +
Sbjct: 433 PKSK 436


>gi|307171935|gb|EFN63564.1| Probable ATP-dependent RNA helicase DDX56 [Camponotus floridanus]
          Length = 546

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 104/483 (21%), Positives = 194/483 (40%), Gaps = 55/483 (11%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +L L  +++ A+   G+ +PT IQ K IPL+L+  DV   A+TG+GKTA+F LP++ 
Sbjct: 13  NFHELELDDRLLKAIAKLGWNEPTLIQEKAIPLILEGKDVLIRARTGSGKTAAFALPLIQ 72

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK- 118
            +   K   + +  + LI+ P++EL  Q+ D            V ++      +   +K 
Sbjct: 73  KILVNKRMQKKQQIKGLIVAPSKELCKQIYDVIMCLTTKCYREVRVIDISPQTDLNAQKP 132

Query: 119 --LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
              E    +++     +        +L +++E L+IDEAD +   G+   I+ + + +P 
Sbjct: 133 LLNEMPDIIVVTPSRLLQHLKAGNMMLKHSLETLIIDEADLLFSFGYENEIKAVLTYLPT 192

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q +L SAT+++++Q +    L NP  +++  P     T    +     +  K   L  
Sbjct: 193 AYQAILASATLSEDVQALKRLVLHNPAILKLEEPPLAPPTQLAHYTLAAEETDKAAILYA 252

Query: 237 QLLQSQDTMKNGIIFCNQKKN----------------------VVNLCHSLEKQGFSVCA 274
            L       K  I      +                         + C ++ +       
Sbjct: 253 LLKLHLIRGKTIIFVNTVDRCYKLKLFLEQFGIPTCILNSELPATSRCRAVTQFNSGTYD 312

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           I    D+++  +      +   +        ARG+D   V +V NFD P    +YIHR G
Sbjct: 313 IIIASDEKALEEPHVIKTKKDKRKKDKESGVARGIDFQFVSNVINFDFPLDINSYIHRAG 372

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           RT R    G A + VA  +   ++ +E+ ++   +  N    +    LE+++        
Sbjct: 373 RTARGKNQGTALSFVAIRERPLMEKVEEHLKGTYNCENL-FKTYQFKLEEVE-------- 423

Query: 395 KNNPIPQKSTGFDRRKKNYSSQKSHIPLKESE---------KISKLQQDIQENDADSLGF 445
                     GF  R K+     + I ++E+             KL+   ++N  D    
Sbjct: 424 ----------GFRYRAKDGWKAVTRIAVREARLKEIRQEVINCEKLKSYFEDNPRDLQSL 473

Query: 446 RGN 448
           R +
Sbjct: 474 RQD 476


>gi|308811262|ref|XP_003082939.1| putative HLA-B associated transcript 1 (ISS) [Ostreococcus tauri]
 gi|116054817|emb|CAL56894.1| putative HLA-B associated transcript 1 (ISS) [Ostreococcus tauri]
          Length = 543

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 90/365 (24%), Positives = 157/365 (43%), Gaps = 3/365 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FV+ +L  
Sbjct: 61  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVITVLQQ 120

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE     V               +   + F  +  +    V      I  + +  KL   
Sbjct: 121 LEPTHGEVGAVILCNTRELAYQISHEFERFSTFLGDVTTAVVFGGIPINQQREQLKLNPP 180

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+           +    L      ++ +    + ++     +Q I    P  +Q ++
Sbjct: 181 NIVVGTPGRLKALANDGTLNLKKCAHFVLDECDKMLEELDMRSDVQEIFKATPHDKQVMM 240

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           F+AT++ EL+ + + F+ +P  I V+  +               +  K        L   
Sbjct: 241 FTATLSKELRALCKKFMNDPMEIFVDDETKLTLHGLVQHYVKLEEAEKNR--KLNDLLDS 298

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF +       L   L +  F    IHG++ Q  R+    +FK+G  +++VA+
Sbjct: 299 LMFNQVVIFVSSVSRCKALDRLLRECNFPSIGIHGDMKQEERLACYKSFKDGDKRILVAT 358

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDAIE 361
           DL ARG+DI  V  V N+D+P+ A+ Y+HR+GR GR G  G A T V + ED   + ++ 
Sbjct: 359 DLVARGIDIERVNIVINYDMPSSADTYLHRVGRAGRFGTKGLAVTFVASSEDTDVLASVH 418

Query: 362 KLIEK 366
           +  E 
Sbjct: 419 ERFET 423


>gi|219122480|ref|XP_002181572.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406848|gb|EEC46786.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 467

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 121/373 (32%), Positives = 187/373 (50%), Gaps = 10/373 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS  ++  V   G+VKPTPIQ   IPL L   D+C  A TG+GKTA+F+LP+L  
Sbjct: 1   FNQLSLSRPLLRGVAAMGFVKPTPIQAAVIPLALAGRDICASAVTGSGKTAAFLLPILER 60

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK--LE 120
           L          + +IL PTRELAAQ       + +  NL  +L++GG             
Sbjct: 61  LLHRY--SGRTKAIILTPTRELAAQCLGMLTSFAQFTNLRASLIVGGAKNVNAQAAELRS 118

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +    N   + + +IEILV+DEADR+LD+GF   +  +    P  RQT
Sbjct: 119 RPDVIVATPGRLLDHITNSAGVTLEDIEILVLDEADRLLDLGFQDEVHELVKACPVQRQT 178

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  ++  + +  ++ P R+ ++  +++ +      +       +          
Sbjct: 179 LLFSATMNTKVDDLIQLSMKRPVRVRISDKANSMDIEVAPRLEQEFVRVRAGNEGANREG 238

Query: 241 S------QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
                  +   K  I+F + K     L       G     +HGN+ Q+ R+  L  F++G
Sbjct: 239 MLLALLTRTFKKQTIVFFDTKAAAHRLMILCGLCGIKCAELHGNLSQQQRLTALEEFRKG 298

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
            + +++A+DLAARGLDI  V  V NF++P++   Y+HRIGRT RAGR G++ TL+ +   
Sbjct: 299 DVDVLLATDLAARGLDIDRVKTVINFEMPSQVATYVHRIGRTARAGRGGRSCTLIGEGRR 358

Query: 355 KHIDAIEKLIEKK 367
             +  + K  E K
Sbjct: 359 HLMKELIKDAEVK 371


>gi|254577701|ref|XP_002494837.1| ZYRO0A10802p [Zygosaccharomyces rouxii]
 gi|238937726|emb|CAR25904.1| ZYRO0A10802p [Zygosaccharomyces rouxii]
          Length = 771

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 127/457 (27%), Positives = 213/457 (46%), Gaps = 29/457 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F DL LS  V+  + DA YVK T IQ  +IP+ L+ +DV G A+TG+GKT +F++P +  
Sbjct: 41  FQDLPLSNAVLRGLKDASYVKLTDIQRDSIPVSLKGNDVLGAAKTGSGKTLAFLIPVLEK 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  +          LI+ PTRELA Q+ +   K G + + +  L+IGG   + + +++ +
Sbjct: 101 LYRERWTEYDGVGALIISPTRELAMQIYEVLIKIGTHCSFSAGLVIGGKDVKFEAERISK 160

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +        L ++N+++LV+DEADR LDMGF   +  I S +P  RQTL
Sbjct: 161 INILIGTPGRLLQHLDQSVGLNIDNLQMLVLDEADRCLDMGFKKTLDAIVSNLPPIRQTL 220

Query: 182 LFSATMTDELQKVSENFLQNPKR--IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LFSAT +  L  ++   L + K      N   S  ET E                     
Sbjct: 221 LFSATQSQSLNDLARLSLTDYKTVGTPANVSGSQPETPETLQQHYIVVELADKLDTLFSF 280

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQ 297
                    I+F +  K V  +  +  K    +    +HG   QR+R + L  F      
Sbjct: 281 IKTHLKCKMIVFFSSSKQVHFVYETFRKLQPGISLMHLHGRQKQRARTETLDKFSRAQQV 340

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++A+D+ +RG+D P V  V   D P   + YIHR+GR+ R G+ GK+  ++  ++ +  
Sbjct: 341 CLIATDVVSRGIDFPAVDWVVQVDCPENVDTYIHRVGRSARYGKQGKSLIMLTPQENEPF 400

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ-KSTGFDRRKKNYSSQ 416
             +++L  ++++                ++     ++K +  PQ +S  F   +  Y  Q
Sbjct: 401 --LQRLKGRRIEP---------------NMLNIKQSKKKSIKPQLQSLLFKDPELKYLGQ 443

Query: 417 KSHIP------LKESEKISKLQQDIQENDADSLGFRG 447
           K+ I       +++  ++ K  Q   E  A SLG  G
Sbjct: 444 KAFISYVRSIYIQKDHEVFKFDQLPTEEFAQSLGLPG 480


>gi|148726561|emb|CAN88468.1| novel protein similar to vertebrate eukaryotic translation
           initiation factor 4A, isoform 2 (EIF4A2, zgc:63783)
           [Danio rerio]
          Length = 382

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 194/378 (51%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L   ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 9   NFDDMNLKETLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 68

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF-EAQNKKLE 120
            LE  +   +    L+L PTRELA Q+       G     +    IGG        K   
Sbjct: 69  QLEIEQKETQA---LVLAPTRELAQQIQKVILALGDYMGASCHACIGGTNVRNEMQKLQA 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I  I   +    Q 
Sbjct: 126 EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLSTNIQV 185

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V+  F++ P RI V     T E I+  ++    +  K   L      
Sbjct: 186 VLLSATMPADVLEVTTKFMREPVRILVKKEELTLEGIKQFYINVEREEWKLDTLCDL--Y 243

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 244 ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDIIMREFRSGSSRVLI 303

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V +ED + +  I
Sbjct: 304 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI 363

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      V+ +  +++ L
Sbjct: 364 ETFYNTTVEEMPMNVADL 381


>gi|224057083|ref|XP_002193182.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Taeniopygia
           guttata]
          Length = 622

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 108/398 (27%), Positives = 179/398 (44%), Gaps = 12/398 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F   G    +   + ++GY  PTPIQ++ IP+ L   D+   A TG+GKTA+F+LP++
Sbjct: 206 VEFEHCGFPETLNNNLKNSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVI 265

Query: 61  TILEKGRARVRMPRTLILEPTRE-LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +         P  LIL PTRE      +   E      N+   LL+GG+P   Q  +L
Sbjct: 266 MKV---LKETETPSALILAPTRELAIQIESQAKELMAGLPNMRTVLLVGGLPLPPQLHRL 322

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   V+I TPGR+L+   +  + ++ I+I+V+DE D ML MGF   + +I   +    Q
Sbjct: 323 RQSVKVIIATPGRLLEILKQSSVQLHGIKIIVVDEVDTMLKMGFQQQVLDILEDISHDHQ 382

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+L SAT+   ++ ++   L N  RI +   +     +    +       KK        
Sbjct: 383 TILVSATIPVGIEHLANQLLHNFVRITIGEKNLPCSNVRQIILWVEEPSKKKKLFEILND 442

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    +    +    +      +  G    A+H    Q  R  IL    +   +++
Sbjct: 443 NKLFKPPVLVFVDCKLGADLLSDAVHKITGLQCTAMHSEKSQVERTDILQGLLQEKYEVI 502

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +  RGLD+ +V  V NFD+P+  + Y+H++GR GR G  G A T +     K    
Sbjct: 503 VSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRAGRLGHSGTAITFINNNSKKLFWD 562

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           + K ++     L   L  LN P        H+  R+  
Sbjct: 563 VVKRVKPTGTILPPQL--LNSP------YLHDQKRREQ 592


>gi|320159302|ref|YP_004191680.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
 gi|319934614|gb|ADV89477.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
          Length = 412

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 142/424 (33%), Positives = 219/424 (51%), Gaps = 12/424 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS +++ A+    + KPT IQ   IP +L   D+  +A TG+GKT ++ LP+L
Sbjct: 1   MPFSTLSLSSELIHALPK-DFKKPTDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +      LIL PTRELA QV++   + G++  L    L GG+  E Q + L 
Sbjct: 60  EKLGVNPEQ----EALILVPTRELATQVSEAINQVGQSIGLNAVCLCGGVDKEQQLQALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ T GR++D  N G  L N    LV+DEADR+LDMGF P +QNI   +   RQT
Sbjct: 116 TNPHILVATTGRLVDLANNGLDLSNI-HYLVLDEADRLLDMGFWPDVQNIAGQISSQRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT +DEL+  ++  +Q PK++  +  +ST + I             K  +      
Sbjct: 175 AMFSATFSDELKGKAKLLMQAPKQVAAHQENSTNQDIAETLYLVNKGSKTKALIEL---I 231

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     ++F   K+N   L   L K G S  A+HG+  Q  R + L+ FK G  Q+++
Sbjct: 232 QKNAWTQALVFIGAKENADGLAKKLNKAGISTNALHGDKSQAEREEALAQFKSGQTQVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG  G A +LV   ++  + AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVALSLVCHGEMDALSAI 351

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
             L ++++     DL    P  +K    +   A ++    +++      K+  S  K   
Sbjct: 352 RHLTQRELPV--QDLEGF-PVTDKPSTGESKRAPRDKKANRRTQNKKSVKQFQSKAKRSA 408

Query: 421 PLKE 424
           P  +
Sbjct: 409 PKSK 412


>gi|296421505|ref|XP_002840305.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636520|emb|CAZ84496.1| unnamed protein product [Tuber melanosporum]
          Length = 472

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 208/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F  + L P+++  +   G+ +P+ IQ + I  V+   DV   AQ+GTGKTA+F + +L 
Sbjct: 100 NFDSMDLKPELLRGIYAYGFERPSAIQQRAILPVINNRDVIAQAQSGTGKTATFSISVLQ 159

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     V+  + LIL PTRELA Q+       G   N+     IGG       K L+ 
Sbjct: 160 KIDLS---VKQCQALILAPTRELAQQIQKVVVAIGDFMNVECHACIGGTVVREDMKILQD 216

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P + Q +
Sbjct: 217 GVHVVVGTPGRVHDVIQRRALKTDAIKLFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVV 276

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 277 LLSATMPQDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEDWKLDT--LSDLYE 334

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG++DQ  R  I+  F+ G+ ++++A
Sbjct: 335 TVTITQAVIFCNTRRKVDWLTEKLTARDFTVSAMHGDMDQHQRDLIMKEFRSGSSRVLIA 394

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 395 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 454

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 455 QFYSTQIEEMPMNVADL 471


>gi|319426890|gb|ADV54964.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 427

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 145/422 (34%), Positives = 219/422 (51%), Gaps = 24/422 (5%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
            LG+   ++  + +  YV PTP+Q  TIP VL   DV   A TG+GKTA+F +P+L  L 
Sbjct: 13  QLGIIAPLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLV 72

Query: 65  KGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNKKL 119
             +   +     R L+L PTRELA QVAD+F  Y  + N    +    GG+   AQ + L
Sbjct: 73  DAKTEDKTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQSL 132

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GADVL+ TPGR+LD  +   + +N +  LV+DEADRML +GF   +  +   +P  +Q
Sbjct: 133 RSGADVLVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELTQVLDALPVKKQ 192

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +E+++++   L NP   ++ +     E                   L   L
Sbjct: 193 TLLFSATFPEEVRELTAKLLNNPLEYQLQS-----EQESTIHQRVITVNRPMKTALLAHL 247

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      +IF + K    +L   L K+G +    HG+  Q +R ++L  FK G I ++
Sbjct: 248 IKEHLWSQALIFVSAKNTCNHLAQKLSKRGITAEVFHGDKAQGARTRVLDGFKNGEISVL 307

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI  +  V NFD+P    +Y+HRIGR+GRAG  G A TL++ ED  H   
Sbjct: 308 IATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGV 367

Query: 360 IE-----KLIEKKV------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           IE     KL+ +++      D +  +L     P+ K +       +K   +PQ +  F  
Sbjct: 368 IEKKNKLKLVREQIVGFEADDDMPAELLEQAKPVAKPE---GTGKKKRKQLPQANVEFWG 424

Query: 409 RK 410
           +K
Sbjct: 425 KK 426


>gi|320009565|gb|ADW04415.1| DEAD/DEAH box helicase domain protein [Streptomyces flavogriseus
           ATCC 33331]
          Length = 726

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 145/454 (31%), Positives = 221/454 (48%), Gaps = 16/454 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L
Sbjct: 47  VTFADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTL 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  G    + PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LE
Sbjct: 107 AALAGGHTEKKKPRAIILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALE 166

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVL+ TPGR+ D  NRG   + N+++ V+DEAD+M D+GF+P +  +   +P   Q 
Sbjct: 167 RGVDVLVATPGRLRDIINRGACSLENVQVAVLDEADQMSDLGFLPEVTELLDQIPGGGQR 226

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM +E+  + + +L NP   EV++      T+ H  +       K          
Sbjct: 227 MLFSATMENEIGTLVKRYLSNPVTHEVDSAQGNVSTMSHHVLVV-----KPKDKAPVTAA 281

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   +     +   L + G    A+HG + Q +R ++L +FK+G +  +V
Sbjct: 282 IAARKGRTIIFVRTQLGADRIAEQLIESGVKADALHGGMTQGARTRVLEDFKKGYVNALV 341

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L      +    I
Sbjct: 342 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGVVVSLALPHQRRQ---I 398

Query: 361 EKLIEKK-VDWLNGDLSS---LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            +L+E   VD     +       P + +I  A+     + +     +   +R   + + Q
Sbjct: 399 FRLMEDAGVDASRHIVQGAGVFEPEVAEITGARSLTEVQADSANNAAKQAEREAADLTKQ 458

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNMP 450
              +      +  +L+++     A +   RG+ P
Sbjct: 459 LERVQ----RRAVELREEADRLVARAARERGDDP 488


>gi|229029843|ref|ZP_04185913.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH1271]
 gi|228731458|gb|EEL82370.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH1271]
          Length = 389

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 101/367 (27%), Positives = 186/367 (50%), Gaps = 11/367 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P +  A   AG+ + T IQ + IP +L+  DV   + TGTGKT +++LP+L  +      
Sbjct: 7   PFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI---NPE 63

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           V+ P+ ++L PTREL  Q+ +  +K+     ++ A LIGG   + Q +KL++   V++ +
Sbjct: 64  VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLKKHPRVIVGS 123

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGRIL+     KL M+ ++ +V DE D+++    +  +Q++       RQ + FSAT+T 
Sbjct: 124 PGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQLVFFSATITK 183

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
             +  + +    P+ + +    S +         TY    ++                 +
Sbjct: 184 AAEDAARDLAVEPQLVRITRAESKSLVE-----HTYIICERREKNDYVRRIMHMGDVKAV 238

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
            F N    +  +   L+ +     A+H    ++ R   +  F+ G +++++A+D+AARG+
Sbjct: 239 AFLNDPFRLDEITQKLQFRKMKAAALHSEASKQEREATMRAFRSGKLEILLATDIAARGI 298

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE---K 366
           DI D+ HV + ++P+  + YIHR GRTGR G+ G   +LV +++ + +    K +     
Sbjct: 299 DIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTQQEERKLLQFAKKLGIVFT 358

Query: 367 KVDWLNG 373
           K +  NG
Sbjct: 359 KQEMFNG 365


>gi|219120540|ref|XP_002181006.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407722|gb|EEC47658.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 462

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 117/407 (28%), Positives = 198/407 (48%), Gaps = 35/407 (8%)

Query: 5   DLG-LSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           DL  L   ++ A+     + +P+PIQ + IP+ LQR D+ GIA+TG+GKT +F +P+   
Sbjct: 41  DLPVLHTALLEAIEQVLRFKEPSPIQRQAIPIGLQRRDLIGIAETGSGKTVAFGVPLCHY 100

Query: 63  LEKGRARVRM------PRTLILEPTRE-LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           L    +RV        P  L++ PTRE       +  +   +   +    ++GG   + Q
Sbjct: 101 LLNLPSRVLESVADAGPLALVMAPTRELALQIDGEFQKLLSRQRLIRTVGIVGGQQIQQQ 160

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV- 174
            ++L RG  +++ TPGRI +  +   +++N    +V+DEADRM+DMGF P I+ I     
Sbjct: 161 AQELRRGVHIVVGTPGRINECIDMAYMVLNQCCYIVLDEADRMIDMGFAPQIETILDACG 220

Query: 175 ------------------------PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
                                      R T +FSATM  E++++++ +L++P  + V   
Sbjct: 221 GSLKSENEAETYQQEKEDLQKADVARHRLTAMFSATMPPEVERIAKRYLRHPAIVSVGDK 280

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
            S         +   A  S+K  +L++ LQ +  ++  II    +K        + ++  
Sbjct: 281 DSGKNARIEQRIMFLASVSQKEKVLREQLQDRRFLREKIIVFVNEKKHAEGVGRMVERSG 340

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP-NRAENY 329
             C +      + + +           ++VA+D+A RGLDIPDV HV N+D+P    ENY
Sbjct: 341 RACVVLHGGKTQEQREENLETFRRGNVVLVATDVAGRGLDIPDVAHVINYDLPTRSIENY 400

Query: 330 IHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376
            HRIGRTGRAG+ G A + +  ED   +  ++  +E   + +   L+
Sbjct: 401 THRIGRTGRAGKEGVATSFITDEDEGIMAPLKAYLESTGNRVPERLA 447


>gi|282863822|ref|ZP_06272880.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
 gi|282561523|gb|EFB67067.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
          Length = 496

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 134/424 (31%), Positives = 205/424 (48%), Gaps = 17/424 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL L   ++  +   G  +P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 56  FADLDLPAPLLATLGAEGVTEPFPIQAATLPNALVGRDVLGRGRTGSGKTLAFGLALLAR 115

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y ++  L  A ++GG+    Q   L  G
Sbjct: 116 TAGRRADARRPLALVLVPTRELAQQVTDALAPYARSLKLRTATVVGGMSIGRQASALRAG 175

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           ADV++ TPGR+ D   RG   ++ + + V+DEAD+M D+GF+P +  +  LV    Q +L
Sbjct: 176 ADVVVATPGRLADLVGRGDCRLDRVAVTVLDEADQMADLGFLPQVTELLDLVRPDGQRML 235

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  E+ ++   +L +P    V+  + T  T+EH  +                 +  
Sbjct: 236 FSATLDREVDQLVRRYLHDPVVHSVDPAAGTVTTMEHHVLHVQGADK-----YATTTEIA 290

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F + K  V  L   L   G    A+HG   Q  R + L  F+ G + ++VA+
Sbjct: 291 ARDGRVIMFLDTKHAVDRLTAHLRGSGVRAAALHGGKSQPQRTRTLDRFRTGDLTVLVAT 350

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI-- 360
           ++AARG+ + D+  V N D P   ++Y+HR GRT RAG  GK  TLV  +  + +  +  
Sbjct: 351 NVAARGIHVDDLDLVVNVDPPTDPKDYLHRAGRTARAGESGKVVTLVLPDQRRELTRLMT 410

Query: 361 EKLIEKKVDWLNGDLSSLN----------PPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410
           E  +  +V  +    + L+           PL     +    A+ + P PQ+  G    +
Sbjct: 411 EAGVRPQVTQVRSGEAELSRITGARTPSGVPLAGAAPSTERSAKGSAPGPQRRRGSKPPQ 470

Query: 411 KNYS 414
              S
Sbjct: 471 GRRS 474


>gi|240278937|gb|EER42443.1| ATP-dependent RNA helicase DBP8 [Ajellomyces capsulatus H143]
          Length = 539

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 122/390 (31%), Positives = 190/390 (48%), Gaps = 18/390 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL+P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F  P+L 
Sbjct: 110 SFASLGLAPWLVGSLSTMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAFAAPILQ 169

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                         +IL PTRELA Q+ +  +      +L   L+ GG     Q   L +
Sbjct: 170 KW---AEDPFGIFAVILTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIALSQ 226

Query: 122 GADVLICTPGRILDHFN----RGKLLMNNIEILVIDEADRMLDMG---FIPYIQNITSLV 174
              ++I TPGR+ DH           +N   ++V DEADR+L  G    +P ++   S +
Sbjct: 227 RPHIVIATPGRLADHITSSGADTICGLNRTRVVVFDEADRLLASGPGSMLPDVETCLSAL 286

Query: 175 PFTRQTLL--FSATMTDEL-----QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           P +       F+AT+T E+          N L            ++              
Sbjct: 287 PPSTARQTLLFTATVTPEVRALKSMPRPANKLPIFVTEVSTENKASIPPTLKQTYLQVPL 346

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             ++  L   +  + ++ K  IIFCN+ K    +   L + G  V ++H  + Q  R   
Sbjct: 347 THREAFLHTLISTAANSQKPAIIFCNRTKTADLVERMLRRLGHRVTSLHSLLPQSERTAN 406

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           LS F+    +++VA+D+AARGLDIP V  V NFDVP   ++Y+HR+GRT RAGR G+A T
Sbjct: 407 LSRFRASAARILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGREGEAVT 466

Query: 348 LVAKEDIKHIDAIEKLIEKK-VDWLNGDLS 376
           LV + D++ + AIE  + ++ V+W    +S
Sbjct: 467 LVGQRDVQLVLAIEDRVGREMVEWKEEGVS 496


>gi|224006724|ref|XP_002292322.1| DEAD/DEAH box RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220971964|gb|EED90297.1| DEAD/DEAH box RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 663

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 113/399 (28%), Positives = 193/399 (48%), Gaps = 19/399 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+   P ++ A+      +PTPIQ++ + + L   D+ GIA TG+GKT SF LP++ 
Sbjct: 218 SFGDMAFPPPIMEALKKKNVKRPTPIQMQGLTVALSGRDMVGIAFTGSGKTLSFSLPLVM 277

Query: 62  ILEKGRARVR-----MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP----- 111
              +  AR+       P  ++L P+RELA Q  +   ++      +              
Sbjct: 278 AALEEEARMPLVPGEGPVGIVLAPSRELARQTYEVVTEFCTALTESGGRYPSIRSQLLIG 337

Query: 112 ----FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
                +      ++G   ++ TPGR+ D   +  + ++    + +DEADRMLD+GF   +
Sbjct: 338 GESARDQLQPFRDKGVHCVVATPGRLRDFLKKRSINLDICRYICLDEADRMLDLGFDEEV 397

Query: 168 QNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
             I +     RQT+L+SAT         ++F +      V      A       +     
Sbjct: 398 GEIMNHFHHQRQTILYSATFPK----KFQDFAKQTLVRPVVVNVGRAGAANLDVIQEVEY 453

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             ++  ++  L   Q T    +IFC +K +V ++   L  +G    +IHG  DQ  R + 
Sbjct: 454 VKQEAKIVYLLECLQKTAPPVVIFCEKKGDVDDIHEYLLLKGVEAVSIHGGKDQEERNEA 513

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           ++ +K G   ++VA+D+AA+GLD  D+ HV NFD+P+  ENY+HRIGRTGR G+ G A T
Sbjct: 514 IALYKAGKKDVLVATDIAAKGLDFADIQHVINFDMPSEIENYVHRIGRTGRCGKTGVATT 573

Query: 348 LVAKE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
            + K  +   +  ++ L+++    +   L  ++ P E +
Sbjct: 574 FINKSCEETTLLDLKHLLKEAHQRIPPVLMIMDDPFENV 612


>gi|330501428|ref|YP_004378297.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina NK-01]
 gi|328915714|gb|AEB56545.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina NK-01]
          Length = 458

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 144/404 (35%), Positives = 218/404 (53%), Gaps = 16/404 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L LS  +   +   GY + TPIQ  ++PL+L+  D+   A+TG+GKTA+F + +L  
Sbjct: 6   FASLPLSAAMQANLAAIGYAEMTPIQAASLPLILKGRDLIAQAKTGSGKTAAFGIGLLHP 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L     R    + L+L PTRELA QVA    +  +  +    L +  G+PF  Q   LE 
Sbjct: 66  L---NPRYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR+ +H  +G L ++ +  LV+DEADRMLDMGF+  I  I    P  RQTL
Sbjct: 123 GAHVIVGTPGRVQEHLRKGTLKVDGLNTLVLDEADRMLDMGFVDSISEIIEQTPARRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++  FL+ P+R+EV       +  +  +     Q  +  ++L +  + 
Sbjct: 183 LFSATYPAGIEQLAARFLRTPERVEVEAMHDDDQIEQRFYEIAPGQRMQAVSILLRHFRK 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               +  + FC  ++    L   LE +  S  A+HG+++QR R +IL+ F   ++ ++VA
Sbjct: 243 ----QPVVAFCATRQQCDELAAQLEAEKISAAALHGDLEQRERDQILALFANRSLSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   AE +IHRIGR+GRAG  G A +LVA  +     AIE
Sbjct: 299 TDVAARGLDIAGLEMVINVELSRDAEVHIHRIGRSGRAGDKGLALSLVAPPEASRAQAIE 358

Query: 362 KLIEKKVDWLNGDLSS-----LNPPLEKIDIAQHNHARKNNPIP 400
            L  K + W     +      L PP+  + I      RK    P
Sbjct: 359 TLQGKTLAWYPLPATKSGGEPLLPPMHTLCIGA---GRKEKLRP 399


>gi|118463537|ref|YP_882142.1| ATP-dependent RNA helicase [Mycobacterium avium 104]
 gi|118164824|gb|ABK65721.1| ATP-dependent RNA helicase [Mycobacterium avium 104]
          Length = 455

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 118/361 (32%), Positives = 188/361 (52%), Gaps = 4/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+  ++V A+   G   P PIQ +T+P  L   DV G  +TG+GKT +F +P++ 
Sbjct: 6   TFADLGVPARIVDALTARGITSPFPIQAETLPDTLAGRDVLGRGKTGSGKTLAFSIPLVG 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L  G  R   P  L+L PTRELA Q+    E       L V+ + GG+    Q   L+ 
Sbjct: 66  RLSTGNRRPARPTGLVLAPTRELATQITATLEPLAAACGLRVSTIFGGVSQHRQVTALKA 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++  PGR+ D   +  + +  + + VIDEAD M D+GF+P +  I +  P   Q L
Sbjct: 126 GVDIVVACPGRLEDLMRQRLITLEAVRVTVIDEADHMADLGFLPGVTRILAATPNDGQRL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ + + K+   FL++     V+  +S    + H      +  +K     + + + 
Sbjct: 186 LFSATLDNGVDKLVTRFLRDAVLHSVDEANSPVSEMTHHVFHVDSAQAK----KELVHRL 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K     L   L + G     +HGN+ Q +R + L+ F  G+ +++VA
Sbjct: 242 ASGTGRRILFLRTKHQARKLARQLTESGVPSVDLHGNLSQPARERNLAMFAAGSARVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ + +V  V + D P+  ++Y+HR GRT RAG  G   T+V  E  +H  A+ 
Sbjct: 302 TDIAARGVHVDEVELVVHIDPPSEHKSYLHRSGRTARAGSAGDVVTVVLPEQREHTRALM 361

Query: 362 K 362
           +
Sbjct: 362 R 362


>gi|168207373|ref|ZP_02633378.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens E str. JGS1987]
 gi|168216902|ref|ZP_02642527.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens NCTC 8239]
 gi|182624735|ref|ZP_02952516.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens D str. JGS1721]
 gi|170661259|gb|EDT13942.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens E str. JGS1987]
 gi|177910132|gb|EDT72526.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens D str. JGS1721]
 gi|182381051|gb|EDT78530.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens NCTC 8239]
          Length = 405

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 119/374 (31%), Positives = 204/374 (54%), Gaps = 8/374 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           MD F  LGLS +V+ +++  G  +PT IQ K IP +L   +V G A+TGTGKT +++LP+
Sbjct: 1   MDKFLKLGLSEEVLKSLVGLGIEEPTDIQEKAIPEILNGKNVIGKAETGTGKTLAYLLPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRE--LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +  ++  +  ++     IL PT E  +      N  K G    +T   L+G    + Q +
Sbjct: 61  IEKIDDSKNEMQAI---ILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQME 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+    +L+ T GRIL+  N+ K+  N I+ +VIDE D++LD   I  ++++    P  
Sbjct: 118 KLKNKPHILVGTTGRILELINKKKITTNTIKTIVIDEGDKLLDFINIKDVKSVVKSCPRD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSATM ++  + ++  +   + I+    +   E IEH +     +       L++
Sbjct: 178 TQKLIFSATMNEKALETADELIGTSELIQAKAANKVNENIEHGYFQVELRDK--IDFLRK 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ +    K  I+F N   NV N+   L+       ++HG+ ++  R K L +F+ G  +
Sbjct: 236 LIHAIGDEKKIIVFINNSYNVHNVIQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAK 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ SD++ARGLDI    H+ N D+P  ++NY+HR+GR GRAG  G A++L   ++ K I
Sbjct: 296 VLITSDVSARGLDIKGATHIVNLDIPMNSQNYLHRVGRVGRAGEKGFAYSLADYKEEKII 355

Query: 358 DAIEKLIEKKVDWL 371
              E+ ++ K+  +
Sbjct: 356 VKCERQLKIKIPRV 369


>gi|291244816|ref|XP_002742290.1| PREDICTED: Vasa-like, partial [Saccoglossus kowalevskii]
          Length = 679

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 134/377 (35%), Positives = 208/377 (55%), Gaps = 14/377 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  L       V  A Y+KPTP+Q  +IP++L+  D+   AQTG+GKTA+F+LP+LT
Sbjct: 301 SFDEAELYETFAKNVAKAKYLKPTPVQKYSIPIILRGRDLMSCAQTGSGKTAAFLLPVLT 360

Query: 62  ILEK------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            + K        +    P+ L++ PTRELA Q+     K+  +  L   +  GG   + Q
Sbjct: 361 GMIKSGLSGSSFSEAVEPQALVITPTRELALQIHHEALKFAYSTILRPVVCYGGTSVQHQ 420

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN----IT 171
            ++L RG ++L+ TPGR+LD   +GK+ +  ++ L++DEADRMLDMGF P I+       
Sbjct: 421 LRELSRGCNLLVATPGRLLDFVGKGKVGLGKLKYLILDEADRMLDMGFEPEIRRLVASPN 480

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT---PSSTAETIEHCFVATYAQY 228
                 RQTL+FSAT  +E+QK++ +FL +   + V      +   E       + + + 
Sbjct: 481 MPSKEDRQTLMFSATFPEEIQKLAGDFLNDYIFLTVGRVGGTTPDIEQSVVQMESQFQKK 540

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            K   +L  ++ S    +  ++F   K++   +   L + GF   +IHG+  QR R + L
Sbjct: 541 EKLMEILIDVISSFPGTEKVVVFVETKRSADFVASYLSQSGFPTTSIHGDRLQREREEAL 600

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           S FK G   ++VA+ +AARGLDIP V HV NFD+P+  + Y+HRIGRTGR G  GKA + 
Sbjct: 601 SCFKRGETPVLVATSVAARGLDIPGVKHVVNFDLPDNIDEYVHRIGRTGRVGNIGKAVSF 660

Query: 349 VAKE-DIKHIDAIEKLI 364
              + D      + K++
Sbjct: 661 FDNDRDTALARPLVKIL 677


>gi|115434952|ref|NP_001042234.1| Os01g0184500 [Oryza sativa Japonica Group]
 gi|75321764|sp|Q5VRY0|RH39_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 39
 gi|55295927|dbj|BAD67795.1| putative VASA [Oryza sativa Japonica Group]
 gi|113531765|dbj|BAF04148.1| Os01g0184500 [Oryza sativa Japonica Group]
 gi|222617875|gb|EEE54007.1| hypothetical protein OsJ_00660 [Oryza sativa Japonica Group]
          Length = 625

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 128/449 (28%), Positives = 199/449 (44%), Gaps = 31/449 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGL  +V+ A+ + G  KPT IQ   +P VL    V   + TG+GKT +++LP++ 
Sbjct: 111 SFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQ 170

Query: 62  ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                  +     + R PR ++L PTREL  QV    +    +      ++ GG     Q
Sbjct: 171 LLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVFRVAKSISHHARFRSTMVSGGSRIRPQ 230

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---- 171
              L    D+++ TPGRILDH   G ++  +I+ LV+DEAD M D GF P I+       
Sbjct: 231 EDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLK 290

Query: 172 ----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
                      QT+L +ATMT  +QK+ +   +    +   T      T  H F+     
Sbjct: 291 NRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTTTFQKRVATARHDFIKLSGS 350

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
            +K  ALLQ L  S       ++FCN   +   + H L +   S    HG +    R++ 
Sbjct: 351 ENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVEN 410

Query: 288 LSNFKEGTIQLMVASDLAARGLDIP-DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
           L+ F+                  +  DV HV  FD P+ + +Y+HR GRT R G  GK  
Sbjct: 411 LNKFRNEEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVT 470

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
           +LVAK+D+     IE+ ++K                E ++    N+ R+    PQ ++  
Sbjct: 471 SLVAKKDVTLATRIEEAMKKN---------------ESLEALTTNNVRRAAVNPQYTSTK 515

Query: 407 DRRKK-NYSSQKSHIPLKESEKISKLQQD 434
            R       +QK    +    K S++ +D
Sbjct: 516 GRPSALKVVNQKGRRGVALQTKSSRIVKD 544


>gi|315222026|ref|ZP_07863937.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
 gi|315188992|gb|EFU22696.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
          Length = 447

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 134/455 (29%), Positives = 204/455 (44%), Gaps = 31/455 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ T +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALKDLNFVEATEVQEKLIPVVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKK 118
             L +    V++    I  P+RELA Q+     +     +  + VA  +GG     Q  K
Sbjct: 61  QKLNEDADSVQVV---ITAPSRELARQIYQAARQIAAFSDKEIRVAHYVGGTDKNRQIGK 117

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L+++     V+DEAD  LDMGF+  +  I S +P  
Sbjct: 118 LSSSQPHIVIGTPGRIYDLVESGDLVIHKAHTFVVDEADMTLDMGFLMTVDKIASSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++   +  ++TI        +   +       
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVIEQIKIKTVISDTI---ENWLISTKGRDKNAQIY 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 235 KITQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWL--NGDLSSL---------NPPLEKIDIAQ--------HNHARKNNP 398
             +EKL    +  +  NG+                 EK+D                    
Sbjct: 355 RELEKLGIHFIPKMIKNGEFQDTYDRDRRANREKTQEKLDTEMIGLVKKKKKKIKPGYKK 414

Query: 399 IPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQ 433
             Q +    RRK   +  ++      +E+ +K QQ
Sbjct: 415 KIQWAVNEKRRKTKRAENRAR---GRAERKAKRQQ 446


>gi|261189163|ref|XP_002620993.1| ATP-dependent RNA helicase SUB2 [Ajellomyces dermatitidis SLH14081]
 gi|239591778|gb|EEQ74359.1| ATP-dependent RNA helicase SUB2 [Ajellomyces dermatitidis SLH14081]
 gi|239614696|gb|EEQ91683.1| ATP-dependent RNA helicase SUB2 [Ajellomyces dermatitidis ER-3]
 gi|327354159|gb|EGE83016.1| ATP-dependent RNA helicase SUB2 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 443

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 150/373 (40%), Gaps = 5/373 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++ A+ D G+  P+ +Q   IP  +   DV   A++G GKTA FVL  L  
Sbjct: 62  FRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQ 121

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                G   + +         +        +         +           E  + K  
Sbjct: 122 LEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIELLSSKDT 181

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+           ++   L N    ++ +    +  +     +Q I    P  +Q 
Sbjct: 182 YPNIVVGTPGRLNALVRDKKLSLRNIKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQV 241

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ E++ + + F++NP  + V+  +         +    ++  K   L +    
Sbjct: 242 MMFSATLSQEVRPICKKFMRNPLEVYVDDDTKLTLHGLLQYYIKLSESEKNRKLNEL--L 299

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF    +    L   L +  F   A+H  + Q  R+K    FKE   ++ V
Sbjct: 300 DSLEFNQVIIFVKSTQRASELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICV 359

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+  RG+DI  +    N+D+P  A++Y+HR+GR GR G  G A + V+ E D + +  
Sbjct: 360 ATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVSSEQDQEVLKD 419

Query: 360 IEKLIEKKVDWLN 372
           IEK  E  +    
Sbjct: 420 IEKRFEVALPEYP 432


>gi|227496959|ref|ZP_03927211.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
 gi|226833567|gb|EEH65950.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
          Length = 468

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 125/376 (33%), Positives = 192/376 (51%), Gaps = 7/376 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LG+ P++V  +   G+  P PIQ  T+P  L+  DV G  +TG+GKT +F LP++ 
Sbjct: 34  SFASLGVDPELVADLDSRGFTSPFPIQTATLPDTLRGRDVLGRGRTGSGKTLAFSLPLVQ 93

Query: 62  I-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              +    R   P  L+L PTRELA Q+AD         +LTV  + GG+  + Q K L 
Sbjct: 94  RLADDDAPRPGYPLGLVLAPTRELALQIADTIRPLATALDLTVTTVFGGVSQKPQEKALA 153

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+++  PGR+LD   +G + ++++ I V+DEAD M D+GF+P ++ I    P   Q 
Sbjct: 154 AGVDIVVACPGRLLDLMGQGIVRLDDVAITVLDEADHMADLGFLPNVRRIMRATPPRGQR 213

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+ + + K+ + FL +P    V+  SS    ++H       + +K       +L 
Sbjct: 214 MLFSATLDNGVDKLVDEFLHDPLHHSVDPASSPVRDMDHRVWTVADKTAKDG----LVLH 269

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K     L   L   G     + GN+ Q +R + +  F  G   +MV
Sbjct: 270 LASGTGQRILFTRTKHLARRLARKLVAAGIPAVELQGNMSQNARERAMGAFSAGQAHVMV 329

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V  V + D P   + Y+HR GRT RAG  G   TLV  E    +  +
Sbjct: 330 ATDIAARGIDVSGVELVVHVDPPAEHKAYLHRSGRTARAGASGTVVTLVLPEQKHDVQVL 389

Query: 361 EK--LIEKKVDWLNGD 374
            K   I+  ++ +  D
Sbjct: 390 LKKAKIKADIERVRPD 405


>gi|225710312|gb|ACO11002.1| Probable ATP-dependent RNA helicase DDX49 [Caligus rogercresseyi]
          Length = 454

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 137/412 (33%), Positives = 211/412 (51%), Gaps = 15/412 (3%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
             LGL P +       G   P P+Q +T+P +L   +  GIA+TG+GKTA+F LP+L  L
Sbjct: 2   DSLGLKPWLSKQCEAIGLKSPAPVQRETVPKILDGQNGIGIAKTGSGKTAAFALPILDAL 61

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            +          L+L PTRELA Q+AD F+  GK  N+ V+++IGG     Q  +L    
Sbjct: 62  SE---DPYGIYALVLTPTRELAYQIADTFKILGKPLNVKVSIIIGGRDMVLQGSELASSP 118

Query: 124 DVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            ++I TPGR+ DH N          I+ LVIDEADR+L+ GF   I  I + +P +RQTL
Sbjct: 119 HIVIATPGRLADHLNTHSQSSPLKKIKFLVIDEADRLLEGGFDEAIGRIFASIPRSRQTL 178

Query: 182 LFSATMTD-----ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           LF+AT ++      +    +      +  +  +  +     +H  +            + 
Sbjct: 179 LFTATHSESLKELIVANSEKEHFYYREGEDDASGLTVNTLDQHYVLTPADFRDAYLIGVL 238

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             +Q +    + IIF    K    L  +L K GFS  A+H    QR R++ LS F+    
Sbjct: 239 MKIQKESPNASFIIFARTCKIAQILSLTLGKLGFSNVALHSMKPQRERLEALSRFRSHLA 298

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++A+D+A+RGLDIP V +V N ++P  A  Y+HR+GRT RAGR G A +L+   D+  
Sbjct: 299 KILIATDVASRGLDIPHVEYVINHNIPTEATEYVHRVGRTARAGRRGTAISLLTPHDVLL 358

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           +++IE+LI  K+   + D  +++       + Q N  R+   I      FD 
Sbjct: 359 LESIEELIGSKLSEYSVDTKNISEI-----VVQVNVTRRETDIRLAEADFDE 405


>gi|320038401|gb|EFW20337.1| ATP-dependent RNA helicase DBP8 [Coccidioides posadasii str.
           Silveira]
          Length = 508

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 97/367 (26%), Positives = 160/367 (43%), Gaps = 17/367 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ LGL+P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F  P+L 
Sbjct: 107 SFSSLGLAPWLVGSLSAMAIRRPTAIQRACIPEILKGRDCIGGSRTGSGKTVAFAAPILH 166

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                         ++L PT E                +    ++I      A + K   
Sbjct: 167 RW---SEDPFGIFAVVLTPTSE--------MRPQAIALSTRPHVVIATPGRLADHIKTSG 215

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +      R++      +LL +    ++ D    +  +      Q +      T +  
Sbjct: 216 QDTIYGLNRVRMVVLDEADRLLASGPGSMLPDVETCLSAVPSSTSRQTLLFTATVTPEVR 275

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
              +         S++ L           ++T                ++  L   L   
Sbjct: 276 ALKSM------PRSKDRLHIFVTEISTENNTTIPPTLKQCYLQVPMTHREAFLHVLLSTD 329

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            ++ K  IIFCN+ K    L   L + G  V ++H  + Q  R   L+ F+    +L+VA
Sbjct: 330 ANSSKPAIIFCNRTKTADLLDRLLRRLGHRVTSLHSLLPQSERTSNLARFRASAARLLVA 389

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDIP VG V NFDVP   ++YIHR+GRT RAGR G+A TLV + D++ + AIE
Sbjct: 390 TDVAARGLDIPSVGLVVNFDVPRNPDDYIHRVGRTARAGREGEAITLVGQRDVQLVLAIE 449

Query: 362 KLIEKKV 368
           + + +++
Sbjct: 450 ERVGRQM 456


>gi|310791197|gb|EFQ26726.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 608

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 30/406 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + D GL P ++  V  AGY  PTPIQ  T+P + +  DV  +AQTG+GKTA++++P+L 
Sbjct: 119 SYKDAGLHPVMMENVELAGYDAPTPIQKYTLPAIHKGLDVVAVAQTGSGKTAAYLIPVLN 178

Query: 62  ILEKGRARVRMPRTL------------------ILEPTRELAAQVADNFEKYGKNYNLTV 103
            L     ++  PR                    I+ PTRELA Q+ +   K+     L  
Sbjct: 179 KLMGKAKKLAAPRPNPAEVELGQLWVRAEPLVVIVCPTRELAIQIFNEARKFCYRTMLRP 238

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL-LMNNIEILVIDEADRMLDMG 162
            +  GG P   Q ++L +G DVLI +PGR+ D   R  +  +  +  +V DEAD ML   
Sbjct: 239 CVAYGGGPIRDQIQQLGKGCDVLIASPGRLCDFIQRPDVLSLRRLRYMVFDEADEMLHDD 298

Query: 163 FIPYIQNITS---LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
           +      I +         + +LFSAT    L+ +++  L +           +      
Sbjct: 299 WREEFDVIMTGGEQQEGNIKYMLFSATFPKPLRDLAKEHLSSSSVRINIGRIGSTHANIM 358

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
             V   A + KK AL +    +       IIF N K+   +L   L   GF   ++H + 
Sbjct: 359 QRVFEVAPFDKKTALKEH--INSLPACRTIIFVNSKRTADDLDDFLYNIGFPCTSMHSDR 416

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNR----AENYIHRIGR 335
            Q  R   +  F+ G   +++A+ ++ARG+D+ +V HV N+D+P+      E Y HRIGR
Sbjct: 417 TQLEREASMRAFRAGKSPILIATGISARGIDVKNVNHVINYDLPSMDHGGIEEYTHRIGR 476

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEK-LIEKKVDWLNGDLSSLNP 380
           TGR G+ G A +   + D      + + L+E K   +   L    P
Sbjct: 477 TGRMGQRGIATSFYTERDEPITSVLVRTLLETK-QEIPPFLEPYKP 521


>gi|170763913|ref|ZP_02635037.2| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens B str. ATCC 3626]
 gi|170712566|gb|EDT24748.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens B str. ATCC 3626]
          Length = 407

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 119/374 (31%), Positives = 205/374 (54%), Gaps = 8/374 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           MD F  LGLS +V+ +++  G  +PT IQ K IP +L+  +V G A+TGTGKT +++LP+
Sbjct: 3   MDKFLKLGLSEEVLKSLVGLGIEEPTDIQEKAIPEILKGKNVIGKAETGTGKTLAYLLPI 62

Query: 60  LTILEKGRARVRMPRTLILEPTRE--LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +  ++  +  ++     IL PT E  +      N  K G    +T   L+G    + Q +
Sbjct: 63  IEKIDDSKNEMQAI---ILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQME 119

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+    +L+ T GRIL+  N+ K+  N I+ +VIDE D++LD   I  ++++    P  
Sbjct: 120 KLKNKPHILVGTTGRILELINKKKITTNTIKTIVIDEGDKLLDFINIKDVKSVVKSCPRD 179

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSATM ++  + ++  +   + I+    +   E IEH +     +       L++
Sbjct: 180 TQKLIFSATMNEKALETADELIGTSELIQAKAANKVNENIEHGYFQVELRDK--IDFLRK 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ +    K  I+F N   NV N+   L+       ++HG+ ++  R K L +F+ G  +
Sbjct: 238 LIHAIGDEKKIIVFINNSYNVHNVIQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAK 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ SD++ARGLDI    H+ N D+P  ++NY+HR+GR GRAG  G A++L   ++ K I
Sbjct: 298 VLITSDVSARGLDIKGATHIVNLDIPMNSQNYLHRVGRVGRAGEKGFAYSLADYKEEKII 357

Query: 358 DAIEKLIEKKVDWL 371
              E+ ++ K+  +
Sbjct: 358 VKCERQLKIKIPRV 371


>gi|110800080|ref|YP_696204.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens ATCC
           13124]
 gi|110674727|gb|ABG83714.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens ATCC 13124]
          Length = 405

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 119/374 (31%), Positives = 205/374 (54%), Gaps = 8/374 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           MD F  LGLS +V+ +++  G  +PT IQ K IP +L+  +V G A+TGTGKT +++LP+
Sbjct: 1   MDKFLKLGLSEEVLKSLVGLGIEEPTDIQEKAIPEILKGKNVIGKAETGTGKTLAYLLPI 60

Query: 60  LTILEKGRARVRMPRTLILEPTRE--LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           +  ++  +  ++     IL PT E  +      N  K G    +T   L+G    + Q +
Sbjct: 61  IEKIDDSKNEMQAI---ILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQME 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL+    +L+ T GRIL+  N+ K+  N I+ +VIDE D++LD   I  ++++    P  
Sbjct: 118 KLKNKPHILVGTTGRILELINKKKITTNTIKTIVIDEGDKLLDFINIKDVKSVVKSCPRD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSATM ++  + ++  +   + I+    +   E IEH +     +       L++
Sbjct: 178 TQKLIFSATMNEKALETADELIGTSELIQAKAANKVNENIEHGYFQVELRDK--IDFLRK 235

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L+ +    K  I+F N   NV N+   L+       ++HG+ ++  R K L +F+ G  +
Sbjct: 236 LIHAIGDEKKIIVFINNSYNVHNVIQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAK 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ SD++ARGLDI    H+ N D+P  ++NY+HR+GR GRAG  G A++L   ++ K I
Sbjct: 296 VLITSDVSARGLDIKGATHIVNLDIPMNSQNYLHRVGRVGRAGEKGFAYSLADYKEEKII 355

Query: 358 DAIEKLIEKKVDWL 371
              E+ ++ K+  +
Sbjct: 356 VKCERQLKIKIPRV 369


>gi|120610574|ref|YP_970252.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120589038|gb|ABM32478.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
          Length = 619

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 125/434 (28%), Positives = 204/434 (47%), Gaps = 50/434 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-----QRH--DVCGIAQTGTGKTASF 55
           F +LGL+P++V AV D GY +PT +Q + IPL +          D+   +QTG+GKTA+F
Sbjct: 51  FVELGLAPELVQAVADLGYTQPTGVQERAIPLAMGAGADAGKFIDLMVSSQTGSGKTAAF 110

Query: 56  VLPMLT---------------------------------------ILEKGRARVRMPRTL 76
           +LP+L                                               +   P  L
Sbjct: 111 LLPVLHTLIGQQAAAQAAARAEYEAAVAEAAARGEPAPKRAKRKDPTNPRHFKAATPGAL 170

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           +L PTRELA QVA +  +  ++        + G           + AD+++ TPGR+LD 
Sbjct: 171 VLCPTRELAQQVAHDAIELVRHCRGLRVANVVGGIPYQLQIAKLQNADLVVATPGRLLDL 230

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
               ++ ++ ++ LV+DEADRMLD+GF   +  I  L    +QT++FSAT    +Q+++ 
Sbjct: 231 QRSMQIKLDQVQFLVVDEADRMLDLGFSDDLAEINELTSQRKQTMMFSATFAPRIQQLAM 290

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS--KKCALLQQLLQSQDTMKNGIIFCNQ 254
             + +           + +                +    +        ++   ++F + 
Sbjct: 291 RVMHDGGASVKKVQIDSPQEKHANIKQVLFWADNAQHKRKMLDHWLRDTSINQAVVFAST 350

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           +     L + L++ GFS  A+HG + Q  R + L   + G +Q++VA+D+AARG+D+P +
Sbjct: 351 QVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPTI 410

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLN 372
            HVFNF +P +AE+Y HRIGRTGRAGR G A T     D + I  IE   ++  K + + 
Sbjct: 411 THVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIEVYSKQPFKAEVIP 470

Query: 373 GDLSSLNPPLEKID 386
           G      PP  + +
Sbjct: 471 GLEPQQRPPQARSE 484


>gi|300122522|emb|CBK23092.2| ATP-dependent RNA helicase DBP4 [Blastocystis hominis]
          Length = 687

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 118/466 (25%), Positives = 197/466 (42%), Gaps = 25/466 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F  L LS      + +AG+ + T IQ K++   L   D+ G A+TG+GKT +F++P + 
Sbjct: 63  KFEALPLSNYTKKGLNEAGFTEMTDIQQKSLISALMGRDILGCAKTGSGKTLAFLIPALE 122

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  +          +I+ PTRELA Q+ D     GK ++ +  L+IGG  FE +  ++ 
Sbjct: 123 CLYRERWTEEDGIGIVIISPTRELAMQIFDVLCTIGKYHSFSAGLVIGGKDFEEEQSRIV 182

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++      +           +N+  LV+DE DR LDMGF   I +I   +   RQT
Sbjct: 183 SMNILVATPGRFLQHLEQTPGFDCSNVRGLVLDEVDRCLDMGFKTTIDHIVDSLGGDRQT 242

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSAT+ + ++ ++ + L NP  I VN+    A              S+K   L     
Sbjct: 243 QLFSATIDENVKTLASSILSNPVSINVNSDDDYATPTTLTQRYIVCDLSRKV-ELLYSFI 301

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC--AIHGNIDQRSRMKILSNFKEGTIQL 298
                   ++F   +K V  L  +  +    V    +HG   Q  R     +F +    +
Sbjct: 302 KSHLRCKILVFAASRKEVRFLFEAFRRMKPGVSLLHLHGKQKQTMRTYTYYDFIQKDHAV 361

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +  +D+AARG+D P V  V  FD P  A  YIHR+GR GR    G     +  ++     
Sbjct: 362 LFCTDVAARGIDFPAVDWVVQFDCPEDAATYIHRVGRAGRFRAKGNGLLFLLPQE----- 416

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDI----AQHNHARKNNPIPQKSTGFDRRKKNYS 414
                   +  +L   ++  N PL++I +     Q    R    I +  T      K + 
Sbjct: 417 --------EAAFLPM-MAEANIPLKRIAVNPSRTQSVTNRLMEEIARDETLGQLASKAFQ 467

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
           S    + L  ++++  ++    E  A+       +P   +    G+
Sbjct: 468 SYVRSVYLASNKQLFDVRALPLEGFAEV---GSPIPRLSVVAGAGR 510


>gi|169596224|ref|XP_001791536.1| hypothetical protein SNOG_00869 [Phaeosphaeria nodorum SN15]
 gi|111071244|gb|EAT92364.1| hypothetical protein SNOG_00869 [Phaeosphaeria nodorum SN15]
          Length = 598

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 115/408 (28%), Positives = 188/408 (46%), Gaps = 30/408 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D GL P +   +    Y  PTPIQ   IP VL   DV G+AQTG+GKTA+F++P+L+
Sbjct: 121 EFDDAGLHPVMSENIKLCQYRFPTPIQSYCIPAVLSGRDVIGVAQTGSGKTAAFLIPILS 180

Query: 62  ILEKGRARVRMPRTL------------------ILEPTRELAAQVADNFEKYGKNYNLTV 103
            L     ++  PR                    ++ PTRELA Q+ D   +      L  
Sbjct: 181 RLMGKARQLAAPRPNPARYNPQTDRVRAEPLVLVVCPTRELACQIFDEARRLCYRTMLRP 240

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMG 162
            ++ GG P   Q ++LE G D+LI TPGR++D       L +  ++  +IDEAD +L  G
Sbjct: 241 CVIYGGAPSRNQREQLEMGCDILIATPGRLMDFMGNISLLSLKRLKYTIIDEADELLSNG 300

Query: 163 FIPYIQNITS-----LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           +   ++ +               L+FSAT   E +++++ +++            +    
Sbjct: 301 WEEIMEKLFQGGGDINSDGDHTYLMFSATFPKEARRLAKEYMEEDAVRIKVGRVGSTHEN 360

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
               +   A+  K  AL        +     ++F N K     +   +  +G  V ++H 
Sbjct: 361 IKQQIVYVAESEKNQALFDL--IFSEEPGRILVFTNSKFKCDTVDDFIYNKGLPVTSMHS 418

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNR----AENYIHRI 333
           +  QR R   L +F+ G   +MVA+ ++ARGLD+ ++ HV N+D+P+        YIHRI
Sbjct: 419 DRTQREREDALRSFRTGRCPIMVATGVSARGLDVANIKHVINYDLPSTQHGGITEYIHRI 478

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           GRT R G  GKA +     +    + + K++ +    +   L    P 
Sbjct: 479 GRTARIGNEGKATSFFNDRNDDLGEDLCKILIEAKQEIPEFLEQFKPE 526


>gi|169778873|ref|XP_001823901.1| ATP-dependent RNA helicase sub2 [Aspergillus oryzae RIB40]
 gi|238499455|ref|XP_002380962.1| ATP dependent RNA helicase (Sub2), putative [Aspergillus flavus
           NRRL3357]
 gi|91208172|sp|Q2U6P7|SUB2_ASPOR RecName: Full=ATP-dependent RNA helicase sub2
 gi|83772640|dbj|BAE62768.1| unnamed protein product [Aspergillus oryzae]
 gi|220692715|gb|EED49061.1| ATP dependent RNA helicase (Sub2), putative [Aspergillus flavus
           NRRL3357]
          Length = 441

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 87/373 (23%), Positives = 150/373 (40%), Gaps = 5/373 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++ A+ D G+  P+ +Q   IP  +   DV   A++G GKTA FVL  L  
Sbjct: 60  FRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQ 119

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                G   V +         +        +         +           E  + K  
Sbjct: 120 LEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEVLSNKES 179

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+           ++   L N    ++ +    +  +     +Q I    P  +Q 
Sbjct: 180 YPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQV 239

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ E++ V + F++NP  + V+  +         +    ++  K   L +    
Sbjct: 240 MMFSATLSQEIRPVCKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEAEKNRKLNEL--L 297

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF         L   L +  F   A+H  + Q  R+K    FKE   ++ V
Sbjct: 298 DSLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICV 357

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDA 359
           A+D+  RG+DI  +    N+D+P  A++Y+HR+GR GR G  G + + V+ +ED K +  
Sbjct: 358 ATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSNEEDEKVLKD 417

Query: 360 IEKLIEKKVDWLN 372
           IEK  E  +    
Sbjct: 418 IEKRFEVALPEYP 430


>gi|294886929|ref|XP_002771924.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Perkinsus
           marinus ATCC 50983]
 gi|239875724|gb|EER03740.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Perkinsus
           marinus ATCC 50983]
          Length = 582

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 105/394 (26%), Positives = 178/394 (45%), Gaps = 10/394 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL +   +  A+    +   T IQ K IPL+L+  DV G A+TG+GKT +F++P L 
Sbjct: 87  KFTDLQICDPLKEALTTCNFTTMTDIQAKAIPLMLKGKDVLGAAKTGSGKTLAFLVPALE 146

Query: 62  ILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL- 119
           +L   R + +     +++ PTRELA Q+ D  ++   +  L+    I       +N+   
Sbjct: 147 LLVATRFQPKNGTGVMVISPTRELAMQIYDVCKRLVDSTKLSQTYGIVMGGVNRKNEADK 206

Query: 120 --ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++      +    N    +  N+  LVIDEADR+L +GF   +  I  ++P  
Sbjct: 207 LSRGINIIVATPGRLLDHLQNTRGFVYANLMSLVIDEADRILQIGFEEDMNQILKILPKK 266

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVN--TPSSTAETIEHCFVATYAQYSKKCALL 235
           RQT LFSAT T ++  ++   L+ P  ++       +   T                  L
Sbjct: 267 RQTSLFSATQTQKVNDLARLSLKKPIFVQSKGADDDAAISTASGLVQGYVVVGGDDRLRL 326

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 ++  K  ++F +   +V      L      V +IHG   Q +RM     F +  
Sbjct: 327 LFTFLKKNQKKKVMVFFSSCNSVKFHDELLNYIDIPVISIHGQKKQSARMTNFYRFCQME 386

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDI 354
             +++ +D+AARGLDIP V  +  +D P+  + YIHR+GRT R     GKA   +  E++
Sbjct: 387 SGILLCTDVAARGLDIPKVDWIVQYDPPDDPKEYIHRVGRTARGAEGTGKALLFLMPEEL 446

Query: 355 KHIDAIEKLIEKKVDWL---NGDLSSLNPPLEKI 385
             +  + K     ++        ++++   LEK+
Sbjct: 447 GFLRYLRKSGVTTLNEYVFPPAKVANIQHQLEKL 480


>gi|255713704|ref|XP_002553134.1| KLTH0D09746p [Lachancea thermotolerans]
 gi|238934514|emb|CAR22696.1| KLTH0D09746p [Lachancea thermotolerans]
          Length = 621

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 132/393 (33%), Positives = 202/393 (51%), Gaps = 19/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F    L   ++  ++ A + KPTP+Q  ++P++  R D+   AQTG+GKT  F+ P+  
Sbjct: 150 EFTSPPLDQLLLDNIIKARFTKPTPVQKYSVPIIAARRDLMACAQTGSGKTGGFLFPVLS 209

Query: 60  ----------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                              +   P  ++L PTRELA Q+ D  +K+     +   ++ GG
Sbjct: 210 ESFANGPAPVPEQASNFYIKKAFPTAVVLAPTRELATQIFDEAKKFTYRSWVRPCVVYGG 269

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
               +Q K+L RG D+L+ TPGR+ D   RG++ + NI+ LV+DEADRMLDMGF P I++
Sbjct: 270 ADIGSQIKELNRGCDLLVATPGRLSDLLERGRISLCNIKYLVLDEADRMLDMGFEPQIRH 329

Query: 170 ITSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I    +   
Sbjct: 330 IVEGCDMPSVDERQTLMFSATFPMDIQHLARDFLKDYVFLSVGRVGSTSENITQHVLYVE 389

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
               K   L              +IF   K+    L   L  Q     AIHG+  Q  R 
Sbjct: 390 DMDKKSALLDLLAASDDG---LTLIFVETKRMADALTDFLIMQNLRATAIHGDRSQSERE 446

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L+ F+ G   L+VA+ +AARGLDIP+V HV N+D+PN  ++Y+HRIGRTGRAG  G A
Sbjct: 447 RALAAFRSGKASLLVATAVAARGLDIPNVTHVINYDLPNDIDDYVHRIGRTGRAGNTGVA 506

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
              + + +   +  +  L+ +    +   L  L
Sbjct: 507 TAFLNRGNKNVVKEMVDLLTEAKQEVPEFLKQL 539


>gi|119467294|ref|XP_001257453.1| ATP dependent RNA helicase (Sub2), putative [Neosartorya fischeri
           NRRL 181]
 gi|143586096|sp|A1DL85|SUB2_NEOFI RecName: Full=ATP-dependent RNA helicase sub2
 gi|119405605|gb|EAW15556.1| ATP dependent RNA helicase (Sub2), putative [Neosartorya fischeri
           NRRL 181]
          Length = 441

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 86/373 (23%), Positives = 149/373 (39%), Gaps = 5/373 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++ A+ D G+  P+ +Q   IP  +   DV   A++G GKTA FVL  L  
Sbjct: 60  FRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQ 119

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                G   V +         +        +         +           E  + K  
Sbjct: 120 LEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKES 179

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+            +   L N    ++ +    +  +     +Q I    P  +Q 
Sbjct: 180 YPNIVVGTPGRLNALVREKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQV 239

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ E++ + + F++NP  + V+  +         +    ++  K   L +    
Sbjct: 240 MMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSESEKNRKLNEL--L 297

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF         L   L +  F   A+H  + Q  R+K    FKE   ++ V
Sbjct: 298 DSLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICV 357

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           A+D+  RG+DI  +    N+D+P  A++Y+HR+GR GR G  G + + V ++ED K +  
Sbjct: 358 ATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSSEEDEKVLKE 417

Query: 360 IEKLIEKKVDWLN 372
           IEK  E  +    
Sbjct: 418 IEKRFEVALPEYP 430


>gi|45188133|ref|NP_984356.1| ADR260Cp [Ashbya gossypii ATCC 10895]
 gi|74694117|sp|Q759L6|SUB2_ASHGO RecName: Full=ATP-dependent RNA helicase SUB2
 gi|44982950|gb|AAS52180.1| ADR260Cp [Ashbya gossypii ATCC 10895]
          Length = 438

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 90/375 (24%), Positives = 153/375 (40%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P++  A++D G+  P+ +Q  TIP  +   DV   A++G GKTA FVL  L  
Sbjct: 56  FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 115

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
           L+     V +                   F KY       +           E    K  
Sbjct: 116 LDPVPGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTDTRKDIELLKNKDT 175

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+           +    L +    ++ +    + ++     +Q+I    P  +Q 
Sbjct: 176 APHIVVATPGRLKALVRDNNIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQV 235

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ E++ +   FLQNP  I V+  +         +     +  K        L 
Sbjct: 236 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIRLEEREKNR--KLAQLL 293

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF         L   L    F    +HG++ Q  R+     FKE   ++ V
Sbjct: 294 DDLEFNQVIIFVKSTLRANELTKLLNASNFPAITVHGHMRQEERIARYKAFKEFEKRICV 353

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           ++D+  RG+DI  +    N+D+P+ A+ Y+HR+GR GR G  G A +LV +K+D + +  
Sbjct: 354 STDVFGRGIDIERINLAINYDMPSEADQYLHRVGRAGRFGTKGLAISLVSSKDDEEVLAK 413

Query: 360 IEKLIEKKVDWLNGD 374
           I++  + K+     +
Sbjct: 414 IQERFDVKITEFPEE 428


>gi|255323803|ref|ZP_05364929.1| dead/deah box helicase [Corynebacterium tuberculostearicum SK141]
 gi|255298983|gb|EET78274.1| dead/deah box helicase [Corynebacterium tuberculostearicum SK141]
          Length = 441

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 125/383 (32%), Positives = 190/383 (49%), Gaps = 12/383 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG++ ++   +   G  +   IQ  T+P+ L   D+ G A+TG GKT  F +P+L 
Sbjct: 10  SFAELGVAAEICDGLATRGITRTFAIQELTLPIALSGQDLIGQARTGMGKTYGFGVPLLD 69

Query: 62  ILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +            PR L++ PTRELA QV ++ +    +  + +A + GG P+E Q KK
Sbjct: 70  RVFDDADIDELDGTPRALVVVPTRELAQQVTEDLQVAAAHLPVRLASIYGGRPYEEQIKK 129

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G DV+I TPGR++D   RG L ++ + ILV+DEAD MLD+GF+P ++ I   +    
Sbjct: 130 LNKGVDVIIGTPGRLIDLHERGNLQLDRVAILVLDEADEMLDLGFLPSVEAILKALDGNA 189

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
              +  +                              T       T+  +      +   
Sbjct: 190 HQTMLFSATMPGAILTLARRFMEKPIHIRAESGEQDFTHSSTRKVTFQAHRMDKVAVVAH 249

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     IIF   K+    L   L ++GF V A+HG++ Q+SR K L  F+ G + +
Sbjct: 250 ALQGSGRGRTIIFARTKRAAAQLADDLARRGFHVGAVHGDLGQKSREKSLHAFRTGQVDI 309

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ DV HV N+ VP+    ++HRIGRTGRAG  G A T+V  +++    
Sbjct: 310 LVATDIAARGIDVDDVTHVINYQVPDDPMTFVHRIGRTGRAGHTGTAITMVGYDELGKWQ 369

Query: 359 AIEKLIEKKVDWLNGDLSSLNPP 381
            I        D L  DL   NPP
Sbjct: 370 VIN-------DEL--DLGEPNPP 383


>gi|258652378|ref|YP_003201534.1| DEAD/DEAH box helicase domain-containing protein [Nakamurella
           multipartita DSM 44233]
 gi|258555603|gb|ACV78545.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM
           44233]
          Length = 586

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 136/414 (32%), Positives = 216/414 (52%), Gaps = 23/414 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+ G+  ++V A+ D G  +   IQ  T+P+ L   D+ G A+TG GKT  F +P+L 
Sbjct: 46  TFAEFGVDERIVTALADVGIERTFAIQALTLPIALTGSDLIGQARTGMGKTLGFGVPLLQ 105

Query: 62  ILEKGR----------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111
            L   +             R PR +++ PTREL  QV  +    GK   L V  + GG  
Sbjct: 106 RLSHDKAVTVDEKGKLPVGRAPRAVVMVPTRELCVQVTRDLHALGKALGLAVTAVYGGRA 165

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
           +E Q K L+ G D+++ TPGR+LD  N G L++  +++LV+DEAD MLD+GF+P ++ + 
Sbjct: 166 YEPQIKALQAGVDLVVGTPGRLLDLANSGHLVLGGVKVLVLDEADEMLDLGFLPDMEKVL 225

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            LVP  +QT+LFSATM   +  ++  F+  P        ++            Y  ++  
Sbjct: 226 DLVPTVKQTMLFSATMPGPILTLARTFMSRPM-HIRAEAAAEGAMHSTTRQFVYRAHALD 284

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              +   +         ++F   K+    +   LE++GF+  A+HG++ Q +R + L  F
Sbjct: 285 KVEMLARVLQARGRGLTMVFTRTKRTAAKVAEDLEERGFAAAAVHGDLGQGAREQALRAF 344

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G + ++VA+D+AARG+D+ DV HV NF  P   + Y+HRIGRTGRAG+ G A + +  
Sbjct: 345 RAGKVDVLVATDVAARGIDVDDVTHVINFQCPEEEKTYVHRIGRTGRAGKTGTAVSFIDW 404

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           +DI     I + +E           + N P+E    + H  A     IP+ +TG
Sbjct: 405 DDIPRWQLINQALEL----------NFNDPVETYSTSPHLFA--ELDIPEGTTG 446


>gi|159117282|ref|XP_001708861.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
 gi|157436975|gb|EDO81187.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
          Length = 450

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 128/417 (30%), Positives = 208/417 (49%), Gaps = 18/417 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH--DVCGIAQTGTGKTASFVLP 58
           M F DLG+ P+++ A+   G+++PT IQ + + +V      DV G+A+TG+GKT +F +P
Sbjct: 1   MLFRDLGVCPELLDALERIGWLEPTAIQKEMLTVVSHNKACDVVGVAETGSGKTGAFAIP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L  L +    V+   T++L PTRELA Q    F   GK++ L   L+IGG+    Q K 
Sbjct: 61  ALQDLLERGTNVKGVHTVVLSPTRELAVQTFSVFRDLGKDFGLRTGLVIGGVDLMQQRKT 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +   VLICTPGR++DH    +     ++  L+IDEAD+ML+      + N+    P  
Sbjct: 121 LAQQPHVLICTPGRLVDHLATTEGFSLKSLRFLIIDEADKMLEQDMGRAVLNLAKDCPQR 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R+T LFSAT    +Q +        + + +     T    +               LL  
Sbjct: 181 RRTFLFSATFPSAVQALQNECTDRSRLVHIQVGVLTKAASDVDGSTNTQLAVVDNELLSH 240

Query: 238 LLQ---------------SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
            +                +       ++F  +   V  L   L   GF V  +HG++ Q 
Sbjct: 241 KMVVLPHAEKQLGLVVLLNNHAACQIMVFATKISTVTKLALMLTTLGFEVGVVHGSMGQD 300

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R++ L+ F++G  ++++ASD+A RG+DIP+V  V N+D+P  + +Y+HR GRT RAGR 
Sbjct: 301 KRLEELNRFRQGEHKILLASDVAGRGIDIPNVDLVINYDLPVASRDYVHRAGRTARAGRR 360

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           G A T+V + D+ +   IE ++  +++    D S       +++ A  +  R    I
Sbjct: 361 GTALTIVTQYDVVNFKRIEAMLGIRMEPYTPDFSEAAGLRSQVEEAIRHAERTARSI 417


>gi|307200175|gb|EFN80473.1| ATP-dependent RNA helicase bel [Harpegnathos saltator]
          Length = 611

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 134/358 (37%), Positives = 193/358 (53%), Gaps = 18/358 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L+  +  ++  AGY KPTP+Q   IP+++ R DV   AQTG+GKTA+F++P+L 
Sbjct: 218 SFDEVKLTEIIKNSIALAGYDKPTPVQKYAIPIIIGRRDVMACAQTGSGKTAAFLVPILN 277

Query: 62  ILEKGRARVRMPRTL-----------ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
            + +   R   P+             +L PTRELA Q+ D   K+     +  A++ GG 
Sbjct: 278 QIYESGPRPPPPQASTGRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGGS 337

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q ++L+RG  +L+ TPGR++D   RGK+ ++N   LV+DEADRMLDMGF P I+ I
Sbjct: 338 NIVDQMRELDRGCHLLVATPGRLVDMLGRGKIGLHNCRYLVLDEADRMLDMGFEPQIRRI 397

Query: 171 TSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                       QTL+FSAT   E+Q ++ +FL N   + V    ST+E I    V    
Sbjct: 398 VQQDNMPPTGERQTLMFSATFPKEIQILARDFLSNYIFLAVGRVGSTSENITQKIVWVEE 457

Query: 227 QYSKKCALLQQLLQSQDT---MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283
              +   L      +          ++F   KK    L   L + G+ V +IHG+  QR 
Sbjct: 458 HDKRSYLLDLLQASNFADSSAESLTLVFVETKKGADMLEEYLAQMGYPVTSIHGDRTQRE 517

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R + L  F+ G   ++VA+ +AARGLDIP V HV NFD+P   E Y+HRIGRTGR G 
Sbjct: 518 REEALRRFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGN 575


>gi|307110891|gb|EFN59126.1| hypothetical protein CHLNCDRAFT_137938 [Chlorella variabilis]
          Length = 1343

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 123/441 (27%), Positives = 202/441 (45%), Gaps = 51/441 (11%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIP---------------------LVLQRHD 40
           ++   GLS +++  +   G+ +P  IQ + +P                     L++   D
Sbjct: 447 NWNQCGLSTRILEVLKKGGFEQPLSIQAQALPGAWLGCRGRCSLAAAPWPACSLIMSGRD 506

Query: 41  VCGIAQTGTGKTASFVLPMLTILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKN 98
             GIA+TG+GKT +FVLPM+  ++   A      P  L + PTREL  Q +     +   
Sbjct: 507 CIGIAKTGSGKTLAFVLPMMRHVKDQPALANGDGPVALAMAPTRELVTQASVLGWWWLMI 566

Query: 99  YNL----------TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR---GKLLMN 145
                        T   + GG     Q  +L+RG ++++CTPGR++D           + 
Sbjct: 567 GKEVKRFAKVVGLTCVCVYGGTGVANQITELKRGTEIVVCTPGRMIDILVTSGGRITNLR 626

Query: 146 NIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRI 205
            +  LV+DEADRM DMGF P I  I   +   RQT++FSAT   +++ ++   L NP  I
Sbjct: 627 RVTYLVLDEADRMFDMGFEPQIMRIVQNIRPDRQTVMFSATFPRQVEVLARQVLHNPVEI 686

Query: 206 EVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL 265
           +V   S   + I             +   L ++L         +IF + +     L   L
Sbjct: 687 QVGGRSVVNKDITQFI--EIRPEDDRFLRLLEILGEWYERGKLLIFVSSQDRCDTLFRDL 744

Query: 266 EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNR 325
            +       +HG  DQ  R   + ++K     ++VA+ +AARGLD+ D+  V N+DVPN 
Sbjct: 745 LR-----AGLHGGKDQSDRESTIVDYKANVCNILVATSVAARGLDVKDLVLVVNYDVPNH 799

Query: 326 AENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
            E+Y+HR+GRTGRAG  G A T +  ++ ++   + K +++    +  DL+++     K 
Sbjct: 800 HEDYVHRVGRTGRAGAKGSAITFIGPDEEQYAPDLVKALKESGAPIPQDLAAMAEAFGK- 858

Query: 386 DIAQHNHARKNNPIPQKSTGF 406
                   R+       S+GF
Sbjct: 859 -------KRREGKAQLHSSGF 872


>gi|307324569|ref|ZP_07603776.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306889813|gb|EFN20792.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 463

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 126/389 (32%), Positives = 193/389 (49%), Gaps = 7/389 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L +  +++  +   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L 
Sbjct: 47  SFAELDMPKELITELTQQGVTVPFPIQAATLPNALAGRDVLGRGRTGSGKTLAFGLALLA 106

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                RA  R P  L+L PTRELA QV +    Y +   L  A ++GG+    Q   L  
Sbjct: 107 RTAGQRAEPRRPLALVLVPTRELAQQVTEALTPYARRLGLRAATVVGGMSINRQADALRN 166

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G++V+I TPGR+ D   RG   ++ +   V+DEAD+M DMGF+P +  +   VP   Q L
Sbjct: 167 GSEVVIATPGRLYDLIERGDCRLDQVRTTVLDEADQMADMGFLPQVTRLLRQVPADGQRL 226

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ K++  FL +P    V+  +    T+EH  +       +           
Sbjct: 227 LFSATLDHDISKLTRQFLDDPAVHSVDPSAGAVTTMEHHVLHIADTDKRSVVTRVA---- 282

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F + K+ V  L   L   G    A+HG   Q  R + L  FK G +  +VA
Sbjct: 283 -ARDGRVLLFLDTKRAVDRLTRHLLTSGVRAAALHGGKSQPQRTRTLDQFKSGHVTALVA 341

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +++AARG+ + D+  V N D P   ++Y+HR GRT RAG  G   TLV  +  + +  + 
Sbjct: 342 TNVAARGIHVDDLDLVVNVDPPADHKDYLHRGGRTARAGGSGSVITLVTPDQRREMGRL- 400

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
            + +  +      + S +P L +I  AQ 
Sbjct: 401 -MADAGITPQTAQVHSADPELTRITGAQE 428


>gi|319947567|ref|ZP_08021797.1| ATP-dependent RNA helicase DbpA [Streptococcus australis ATCC
           700641]
 gi|319746255|gb|EFV98518.1| ATP-dependent RNA helicase DbpA [Streptococcus australis ATCC
           700641]
          Length = 447

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 120/366 (32%), Positives = 184/366 (50%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ +  +++ T +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTDFKFKDYIQEALKEINFIEATEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNKK 118
             L +  + V +    I  P+RELA Q+     +   +      +A  +GG     Q  K
Sbjct: 61  QTLNEDSSHVEVV---ITAPSRELATQIYQAARQIASHCEKEVRIANYVGGTDKARQIDK 117

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++     V+DEAD  LDMGF+  +  I S +P  
Sbjct: 118 LQIAQPHIVIGTPGRIYDLVASGDLAIHKAHTFVVDEADMTLDMGFLTTVDKIASSLPKQ 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  ++TI++  V+T  +   +      
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVMEQIKTKTVISDTIDNWLVSTKGRDKNEQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K    +L   L ++G  V  IHG +  R R +I++  K    +
Sbjct: 237 --TQALQPYLAMIFVNTKDRADDLHAFLVEKGLKVAKIHGGVPPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EKL
Sbjct: 355 RELEKL 360


>gi|313500928|gb|ADR62294.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida BIRD-1]
          Length = 461

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 207/369 (56%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L LS  ++  +   GY   TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 8   FATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNP 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     R    + L+L PTRELA QVA    +  +  +    L +  G+    Q   LE 
Sbjct: 68  I---NPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEH 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H ++G L+++ +  LV+DEADRMLDMGF   I +I    P  RQTL
Sbjct: 125 GAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++ +F++NP++++V +  +  +  +        Q  +    +      
Sbjct: 185 LFSATYPAGIKQLAADFMRNPQQVKVESLHTDNQIEQRFIEIDPQQRLEAVTRVL----G 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ + FC  K+   ++   L  +G    A+HG+++QR R ++L+ F   +  ++VA
Sbjct: 241 HYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   AE ++HR+GRTGRAG  G A +LVA  +     AIE
Sbjct: 301 TDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIE 360

Query: 362 KLIEKKVDW 370
            L +  + W
Sbjct: 361 ALQKSPLRW 369


>gi|282863805|ref|ZP_06272863.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
 gi|282561506|gb|EFB67050.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
          Length = 492

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 133/429 (31%), Positives = 207/429 (48%), Gaps = 14/429 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL   ++ A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 65  FADLGLPEPLLAALGAEGMSVPFPIQAATLPNTLVGRDVLGRGRTGSGKTLAFGLALLAR 124

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y ++  L +A ++GG+    Q   L  G
Sbjct: 125 TAGRRAEPRQPLALVLVPTRELAQQVTDALTPYARSVRLRLAAVVGGMSIGRQASALRGG 184

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           +++++ TPGR+ D  +RG   ++ ++I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 185 SEIVVATPGRLKDLIDRGDCRLDQVDITVLDEADQMADMGFMPQVTALLDQVSPGGQRML 244

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  S+T  T+EH  +  +    +            
Sbjct: 245 FSATLDRNVDLLVRRYLTDPVVHSVDPSSATVTTMEHHVLHVHGADKQATTTEIA----- 299

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F + K  V  L   L   G    A+HG   Q  R + L+ FK G + ++VA+
Sbjct: 300 AREGRVIMFLDTKHAVDRLTRDLLNSGVRAAALHGGKSQPQRTRTLAQFKSGHVTVLVAT 359

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           ++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV  +  + +  +  
Sbjct: 360 NVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPDQRRSMTRLMS 419

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNH------ARKNNPIPQKSTGFDRRKKNYSSQ 416
               +       + S    L +I  AQ         A      PQ+  G  R ++   +Q
Sbjct: 420 DAGIRPQVTQ--VRSGEAELSRITGAQAPSGVPVVIAAPVTERPQRG-GASRARRGRPAQ 476

Query: 417 KSHIPLKES 425
            +    +  
Sbjct: 477 SARRTAQRR 485


>gi|256786437|ref|ZP_05524868.1| ATP-dependent RNA helicase [Streptomyces lividans TK24]
 gi|289770328|ref|ZP_06529706.1| ATP-dependent RNA helicase [Streptomyces lividans TK24]
 gi|289700527|gb|EFD67956.1| ATP-dependent RNA helicase [Streptomyces lividans TK24]
          Length = 728

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 150/467 (32%), Positives = 229/467 (49%), Gaps = 18/467 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L 
Sbjct: 50  TFADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLA 109

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L  GR     PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LER
Sbjct: 110 TLAGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALER 169

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVL+ TPGR+ D  NRG   + N++I V+DEAD+M D+GF+P +  +   VP   Q +
Sbjct: 170 GVDVLVATPGRLRDIINRGACSLENVQIAVLDEADQMSDLGFLPEVTELLDQVPAGGQRM 229

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +E++ + + +L++P   EV+       T+ H  +       K           
Sbjct: 230 LFSATMENEIKTLVDRYLKDPALHEVDAAQGAVTTMSHHILVV-----KPKDKAPVTAAI 284

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIF   +     +   L   G    A+HG + Q +R + L++FK+G + ++VA
Sbjct: 285 ASRKGRTIIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLVA 344

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L      +    I 
Sbjct: 345 TDVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLSLPHQRRQ---IF 401

Query: 362 KLIEKK-VDWLNGDL---SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS-SQ 416
           +L+E   VD     +   ++ +P     ++A+   AR    +  +S G   ++      Q
Sbjct: 402 RLMEDAGVDATRHIIQGGAAFDP-----EVAEITGARSMTEVQAESAGNAAQQAEREVGQ 456

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
            +    +   + ++L+++     A     RG  P  +L +    + +
Sbjct: 457 LTKELERAQRRANELREEADRLVARVARERGEDPETVLAEVAATVAE 503


>gi|134034145|sp|Q0CXD0|IF4A_ASPTN RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
          Length = 396

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L  +++  V   G+ +P+ IQ + I  +++ +DV   AQ+GTGKTA+F +  L 
Sbjct: 24  SFDSMELKAELLRGVYAYGFERPSAIQQRAIMPIIKGNDVIAQAQSGTGKTATFSISALQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++  + LI+ PTRELA Q+       G   N+     IGG       K L+ 
Sbjct: 84  KIDPN---LKACQALIVAPTRELAQQIQKVVVAIGDFMNINCHACIGGTAIRDDMKALQE 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGRI D   R  L  + +++ ++DEAD ML  GF   I +I  L+P   Q +
Sbjct: 141 GPPIVVGTPGRIQDMIQRRVLKTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQATQVV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 201 LLSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A
Sbjct: 259 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDIIMKEFRSGSSRVLIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 379 QFYSTQIEEMPMNVADL 395


>gi|21222498|ref|NP_628277.1| ATP-dependent RNA helicase [Streptomyces coelicolor A3(2)]
 gi|5918498|emb|CAB56376.1| ATP-dependent RNA helicase [Streptomyces coelicolor A3(2)]
          Length = 740

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 150/467 (32%), Positives = 229/467 (49%), Gaps = 18/467 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L 
Sbjct: 62  TFADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLA 121

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L  GR     PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LER
Sbjct: 122 TLAGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALER 181

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVL+ TPGR+ D  NRG   + N++I V+DEAD+M D+GF+P +  +   VP   Q +
Sbjct: 182 GVDVLVATPGRLRDIINRGACSLENVQIAVLDEADQMSDLGFLPEVTELLDQVPAGGQRM 241

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +E++ + + +L++P   EV+       T+ H  +       K           
Sbjct: 242 LFSATMENEIKTLVDRYLKDPALHEVDAAQGAVTTMSHHILVV-----KPKDKAPVTAAI 296

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIF   +     +   L   G    A+HG + Q +R + L++FK+G + ++VA
Sbjct: 297 ASRKGRTIIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLVA 356

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L      +    I 
Sbjct: 357 TDVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLSLPHQRRQ---IF 413

Query: 362 KLIEKK-VDWLNGDL---SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS-SQ 416
           +L+E   VD     +   ++ +P     ++A+   AR    +  +S G   ++      Q
Sbjct: 414 RLMEDAGVDATRHIIQGGAAFDP-----EVAEITGARSMTEVQAESAGNAAQQAEREVGQ 468

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
            +    +   + ++L+++     A     RG  P  +L +    + +
Sbjct: 469 LTKELERAQRRANELREEADRLVARVARERGEDPETVLAEVAATVAE 515


>gi|148550027|ref|YP_001270129.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida F1]
 gi|148514085|gb|ABQ80945.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 494

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 207/369 (56%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L LS  ++  +   GY   TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 41  FATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNP 100

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     R    + L+L PTRELA QVA    +  +  +    L +  G+    Q   LE 
Sbjct: 101 I---NPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEH 157

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H ++G L+++ +  LV+DEADRMLDMGF   I +I    P  RQTL
Sbjct: 158 GAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTL 217

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++ +F++NP++++V +  +  +  +        Q  +    +      
Sbjct: 218 LFSATYPAGIKQLAADFMRNPQQVKVESLHTDNQIEQRFIEIDPQQRLEAVTRVL----G 273

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ + FC  K+   ++   L  +G    A+HG+++QR R ++L+ F   +  ++VA
Sbjct: 274 HYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVA 333

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   AE ++HR+GRTGRAG  G A +LVA  +     AIE
Sbjct: 334 TDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIE 393

Query: 362 KLIEKKVDW 370
            L +  + W
Sbjct: 394 ALQKSPLRW 402


>gi|50421181|ref|XP_459136.1| DEHA2D15048p [Debaryomyces hansenii CBS767]
 gi|74659326|sp|Q6BRN4|IF4A_DEBHA RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|49654803|emb|CAG87307.1| DEHA2D15048p [Debaryomyces hansenii]
          Length = 397

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L P +V  +   GY  P+ IQ + I  + +  DV   AQ+GTGKTA+F +  L 
Sbjct: 24  TFDDLNLKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++     +    LIL PTRELA Q+ +     G   N+TV   IGG   +   +  + 
Sbjct: 84  RIDENEKSTQ---ALILAPTRELALQIQNVITHIGLYLNVTVHASIGGTSMKDDIEAFKS 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D   R     + +++ ++DEAD ML  GF   I NI  L+P T Q +
Sbjct: 141 GVQIVVGTPGRVFDMIERRFFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQVV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+ NP RI V     T E I+  ++    +  K   L       
Sbjct: 201 LLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVEQEDYKFDCLCDL--YD 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN +  V  L   L+ + F+V AIH ++ Q  R  I++ F+ G+ +++++
Sbjct: 259 SISVTQAVIFCNTRSKVEFLTTKLKGENFTVSAIHADLPQADRDTIMNEFRSGSSRILIS 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D+  +  IE
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDQDVGMMREIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    +++ +  D+ +L
Sbjct: 379 KFYSTQIEEMPADIGAL 395


>gi|71000385|ref|XP_754887.1| DEAD/DEAH box RNA helicase [Aspergillus fumigatus Af293]
 gi|66852524|gb|EAL92849.1| DEAD/DEAH box RNA helicase, putative [Aspergillus fumigatus Af293]
 gi|159127900|gb|EDP53015.1| DEAD/DEAH box RNA helicase, putative [Aspergillus fumigatus A1163]
          Length = 587

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 111/405 (27%), Positives = 163/405 (40%), Gaps = 26/405 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL P +   +    Y  PTPIQ   IP VL  HD+  IAQTG+GKTA+F++P+L+
Sbjct: 131 KFDDAGLHPIMRENIRLCNYEVPTPIQAYAIPAVLTGHDLIAIAQTGSGKTAAFLIPVLS 190

Query: 62  ILEKGRARVRMPRTL-------------------ILEPTRELAAQVADNFEKYGKNYNLT 102
            L     ++  PR                     I+ PTREL+ Q+ D   +      L 
Sbjct: 191 QLMGKAKKLAAPRPNLANGFDPSVDAVRAEPLVLIVAPTRELSTQIFDEARRLCYRSMLR 250

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
             ++ GG P   Q ++L++G D+LI TPGR+LD  ++  +L        I +    L + 
Sbjct: 251 PCVVYGGAPVREQREELQKGCDILIGTPGRLLDFMDKPHVLSLRRVKYTIIDEADELLLS 310

Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
                           +       M           L      E +              
Sbjct: 311 DWESDFTRIMSGGDVNEDADHRYMMFSATFNRECRRLARKFLAEDHVRIRIGRPGSTHIN 370

Query: 223 ATYAQYSKKCALLQQLLQS---QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                   +  L +Q L            +IF N K     L   L   G    +IH + 
Sbjct: 371 VDQTIIYAEDHLKKQCLYDLLLAMPPSRTLIFVNTKIQADFLDDFLYNMGLPSTSIHSDR 430

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNR----AENYIHRIGR 335
            QR R   L +F+     +MVA+ ++ARGLDI +V HV NFD+P+        YIHRIGR
Sbjct: 431 TQREREDALRSFRSARCPIMVATGVSARGLDIKNVMHVVNFDLPSAAHGGITEYIHRIGR 490

Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNP 380
           T R G  G A +    ++      + K++ +    +   L S  P
Sbjct: 491 TARIGNEGLATSFYNDKNSDIAPDLVKILIETGQKVPDFLESYKP 535


>gi|71021007|ref|XP_760734.1| hypothetical protein UM04587.1 [Ustilago maydis 521]
 gi|46100328|gb|EAK85561.1| hypothetical protein UM04587.1 [Ustilago maydis 521]
          Length = 645

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 125/393 (31%), Positives = 198/393 (50%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +F D+ +   V+  +      VKP+PIQ++ +P      D+ GIA TG+GKT +F LP+L
Sbjct: 210 NFRDMKVPECVIDYLKTQKKIVKPSPIQMQGLPTAFSGRDMIGIAFTGSGKTLAFSLPIL 269

Query: 61  T-----ILEKGRARVRMPRTLILEPTRELAAQVADNFE------KYGKNYNLTVALLIGG 109
                        R   P  +I+ P+RELA Q  ++ +        G    + V L IGG
Sbjct: 270 MLAAEEERRLPFTRGEGPVGMIVCPSRELARQTYESIKGLAEALVQGGYPQIGVLLCIGG 329

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           I    Q+  + +G  +++ TPGR+ D   + K  ++  + L +DEADRM+DMGF   ++N
Sbjct: 330 ISMAEQHHTMSKGFHIVVATPGRLQDMLTKKKFTLDCCKYLCLDEADRMIDMGFEEDVRN 389

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           I       RQTLLFSATM  ++Q  +E  L  P  I V    + +  I            
Sbjct: 390 IMGFFKQQRQTLLFSATMPKKIQDFAEQSLIRPVIINVGRAGAASLDIIQ----EVEYVK 445

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           ++  ++  L   Q T    IIF + K  V ++   L  +G    AIHG+  Q  R   + 
Sbjct: 446 QEAKMVYLLECLQKTAPPVIIFSDNKNEVDDIQEYLLLKGVEAVAIHGSKTQDEREYAIR 505

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FK G   +MVAS +A++GLD  ++ HV N+ +P   E+Y+H+IGRTGR+G+ G A T V
Sbjct: 506 AFKSGQKDVMVASGVASKGLDFSEIQHVINYTMPKEIEDYVHQIGRTGRSGKTGIATTFV 565

Query: 350 AKE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
                 + +  ++ L+ +    +   L+++  P
Sbjct: 566 NANTQEQTLLDLKYLLIEAKQRIPPFLAAIQDP 598


>gi|316968668|gb|EFV52921.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
          Length = 755

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 119/390 (30%), Positives = 200/390 (51%), Gaps = 15/390 (3%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           +S + + A+ D G+   T IQ +TIP +L+  DV G A+TG+GKT +F++P + +L K R
Sbjct: 299 VSEQTLKAIRDMGFETMTEIQAQTIPSLLEGRDVMGAAKTGSGKTLAFLVPAVELLYKLR 358

Query: 68  ARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
              R     I + PTREL+ Q      +  K +++T  L+IGG   + +  KL  G  +L
Sbjct: 359 FLPRNGTGCIVISPTRELSMQTYGVLIELLKYHSITHGLVIGGANRKIEAAKLSTGICIL 418

Query: 127 ICTPGRILDH-----FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           + TPGR+LDH      N  +    N++ L+IDEADR+L++GF   +Q I  L+P  RQT+
Sbjct: 419 VATPGRLLDHLRVSGLNTTEFTYKNLQCLIIDEADRILEIGFELEMQQIIRLLPKQRQTM 478

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T +++ +++  L+          +    T+E           +    L      
Sbjct: 479 LFSATQTAKIEDLAKLALKKEPLFVGIASNVEQATVEGLRQGYAVCPIENRFSLLYTFLR 538

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           ++  K  ++F +   +V      L      V +IHG   Q+ R     +F +     ++ 
Sbjct: 539 KNKKKKVMVFFSSCASVKYHSDLLNYIEVPVASIHGKQKQQKRTSTFFSFIKAQAGTLLC 598

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHIDAI 360
           +D+AARGLDIP V  +  +D P+   +YIHR+GRT R  G  G A  ++   ++K +  +
Sbjct: 599 TDVAARGLDIPKVDWIVQYDPPDDPTDYIHRVGRTARGEGGQGNALLILQPSELKFLYYL 658

Query: 361 EKLIEKKVDWLNGD-----LSSLNPPLEKI 385
           ++    K+  L  +     ++++   LEK+
Sbjct: 659 KQA---KIPVLEYECSWDKVANVQKQLEKL 685


>gi|115384944|ref|XP_001209019.1| eukaryotic initiation factor 4A [Aspergillus terreus NIH2624]
 gi|114196711|gb|EAU38411.1| eukaryotic initiation factor 4A [Aspergillus terreus NIH2624]
          Length = 419

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L  +++  V   G+ +P+ IQ + I  +++ +DV   AQ+GTGKTA+F +  L 
Sbjct: 47  SFDSMELKAELLRGVYAYGFERPSAIQQRAIMPIIKGNDVIAQAQSGTGKTATFSISALQ 106

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++  + LI+ PTRELA Q+       G   N+     IGG       K L+ 
Sbjct: 107 KIDPN---LKACQALIVAPTRELAQQIQKVVVAIGDFMNINCHACIGGTAIRDDMKALQE 163

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGRI D   R  L  + +++ ++DEAD ML  GF   I +I  L+P   Q +
Sbjct: 164 GPPIVVGTPGRIQDMIQRRVLKTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQATQVV 223

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 224 LLSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 281

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A
Sbjct: 282 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDIIMKEFRSGSSRVLIA 341

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 342 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 401

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 402 QFYSTQIEEMPMNVADL 418


>gi|332230780|ref|XP_003264573.1| PREDICTED: probable ATP-dependent RNA helicase DDX59 isoform 1
           [Nomascus leucogenys]
          Length = 619

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 114/404 (28%), Positives = 185/404 (45%), Gaps = 12/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF    L   +   +  +GY  PTPIQ++ IP+ L   D+   A TG+GKTA+F+LP+ 
Sbjct: 203 IDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPV- 261

Query: 61  TILEKGRARVRMPRTLILEPTRE-LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +     + P  LIL PTRE          E       +   L +GG+P   Q  +L
Sbjct: 262 --IMRALFESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLFVGGLPLPPQLYRL 319

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   V+I TPGR+LD   +  + +  ++I+V+DEAD ML MGF   + +I   +P   Q
Sbjct: 320 QQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQ 379

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+L SAT+   +++++   L NP RI     +     +    +       KK        
Sbjct: 380 TILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILND 439

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +    +    +      +  G    +IH    Q  R  IL    EG  +++
Sbjct: 440 KKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVV 499

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +  RGLD+  V  V NFD+P+  + Y+H+IGR GR G++G A T +     +    
Sbjct: 500 VSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWD 559

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           I K ++     L   L  LN P        H+  RK     +++
Sbjct: 560 IAKRVKPTGSILPPQL--LNSP------YLHDQKRKEQQKDKQT 595


>gi|288574292|ref|ZP_06392649.1| DEAD/DEAH box helicase domain protein [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570033|gb|EFC91590.1| DEAD/DEAH box helicase domain protein [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 574

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 128/388 (32%), Positives = 206/388 (53%), Gaps = 7/388 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L  +++ A+   G+  P P+Q K +    +  D+   A+TG+GKT  F+LP+L  
Sbjct: 10  FDRYELREELLNALAAKGFDSPMPVQEKVLESENRDGDLVVQARTGSGKTLGFLLPLLNE 69

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L +       PR L+L PTRELA Q+A   E  GK   +T A L+GG+  E Q K L RG
Sbjct: 70  LPR---ETATPRILVLSPTRELAQQIAGEAEWIGKYMGITTASLVGGMDMERQIKDLRRG 126

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           + +++ TPGR +DH  R  L  + I+ +V+DE D MLDMGF   I+ I + +P   +T L
Sbjct: 127 SALVVGTPGRTMDHIRRRTLKTDTIQTIVLDEGDTMLDMGFRDDIEAILNTLPDPHRTWL 186

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM DE+  +++ +L +P      T     +  E      Y   S K       +   
Sbjct: 187 FSATMPDEVASLTKRYLDSPS---WITLCHDEDQHEDITHRAYLVPSGKRLEGLVNVLLW 243

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
           +  + G+IFC+ K   V     L+++GF+  A+HG++ Q  R  +++ F++G I  +VA+
Sbjct: 244 ENPEMGLIFCHTKAGTVETMERLQEEGFAASALHGDMSQLERNSVMNAFRQGRIPYLVAT 303

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           ++AARGLD+  V HV    +P+  E ++HR GRTGRAG+ G+   ++   +     A+ +
Sbjct: 304 NVAARGLDVQGVSHVIQIGLPDNLETFVHRSGRTGRAGQEGRNILVLTPREKGRFKAMLR 363

Query: 363 LIEKKVDWLN-GDLSSLNPPLEKIDIAQ 389
                + W N  D++ +      +  + 
Sbjct: 364 ASSMDLKWANVPDVAEIAKAQRGLRESA 391


>gi|253742309|gb|EES99150.1| DEAD box RNA helicase Vasa [Giardia intestinalis ATCC 50581]
          Length = 658

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 153/489 (31%), Positives = 229/489 (46%), Gaps = 50/489 (10%)

Query: 1   MDFAD--------LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKT 52
           ++F D        LG  P ++  +    Y +PTPIQ   IPL+L   D+   +QTG+GKT
Sbjct: 170 LEFKDFSPETLQKLGFPPGLIRNIEKLHYKQPTPIQENAIPLILSSMDILATSQTGSGKT 229

Query: 53  ASFVLPMLTILEKGRAR-----------VRMPRTLILEPTRELAAQVADNFEKYGKNYNL 101
            SF+ P++T L    A+              P  +IL PTREL  Q+A    +     +L
Sbjct: 230 FSFLSPIVTKLINSHAKDTILSEDRESSTSFPLAVILSPTRELTQQIAFMCYQLTFKTDL 289

Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
            V L+ GG     Q   L +G D++I TPGR+ D   RG L +  ++I+V+DEAD+MLDM
Sbjct: 290 IVRLVYGGEGAREQKGLLRKGCDIVIATPGRLKDFLERGCLSLKYVQIMVLDEADKMLDM 349

Query: 162 GFIPYIQNITSLVPFT-------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA 214
           GF P I+++              RQTL+FSAT    +Q +++ +L N  RI +    +T 
Sbjct: 350 GFEPQIRDLVYKFDMPGNGSNGSRQTLMFSATFGGGVQNMAKRYLHNEARIHIGQIGTTT 409

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI--------IFCNQKKNVVNLCHSLE 266
            TI+  F        K      + L         I        IF   KK+VV +   L 
Sbjct: 410 TTIKQQFEYIAETAMKSVDKRIEKLIHXLKSPGSIPTASFLTLIFVETKKDVVYIVTKLL 469

Query: 267 KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326
             G  VC +HG+++QR R   L NFK+G   ++VA+D+A RG+DI  + HV NFD P   
Sbjct: 470 NAGLRVCEMHGDLEQRERQNNLKNFKDGKTPVLVATDVAQRGIDIGAIRHVVNFDFPKDI 529

Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDIKH-IDAIEKLIEKKVDWLNGDLSSLNPPL--- 382
           + YIHRIGRTGRAG  G A + +  +   H +  ++ ++ +    +   L    P     
Sbjct: 530 DAYIHRIGRTGRAGAEGLATSFILLDTPHHILRELKNILTQSKQPVPKFLQDGPPSKYGQ 589

Query: 383 --EKIDIAQHNHARKNNPIPQK---------STGFDRRKKNYSSQKSHI-PLKESEKISK 430
              K    ++   RK+  I               F  R  ++S     + P K S  I+ 
Sbjct: 590 GSGKGRSREYESTRKSTQIESDDDLSDLSDYGARFKPRSNHHSGASEAVTPAKPSVSITT 649

Query: 431 LQQDIQEND 439
            ++  +  D
Sbjct: 650 TKEPTERWD 658


>gi|153832565|ref|ZP_01985232.1| DNA and RNA helicase [Vibrio harveyi HY01]
 gi|148871131|gb|EDL70009.1| DNA and RNA helicase [Vibrio harveyi HY01]
          Length = 412

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 139/424 (32%), Positives = 214/424 (50%), Gaps = 12/424 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS +++ A+    + KPT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 1   MPFSTLSLSSELIHALPK-DFKKPTDIQALAIPELLSGKDVLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  +    IL PTRELA QV++   + G++  L    L GG+  E Q + L 
Sbjct: 60  EKLSVNPEQKAL----ILVPTRELAIQVSEAINQVGQSIGLNAVCLCGGVDKETQLQALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ T GR++D  N G  L N    LV+DEADR+LDMGF P +QNI       RQT
Sbjct: 116 ANPQILVATTGRLVDLANNGLELSNI-HYLVLDEADRLLDMGFWPDVQNIAGQTSNQRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT +DEL+  ++  +  PK++  +  +ST + I             K  +      
Sbjct: 175 AMFSATFSDELKGKAKQLMHAPKQVAAHQENSTNQDIAETLYLVNKGSKTKALIEL---I 231

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+     ++F   K+N   L   L K G +   +HGN  Q  R + L+ FK G  Q+++
Sbjct: 232 KQNVWAQVLVFIGAKENADGLAKKLNKAGITTNVLHGNKSQAEREEALAQFKSGQTQVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG  G   +LV   + + + AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVVISLVCHGEAEALSAI 351

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
             L ++++     DL    P  +K    +   A ++    +++      K+     K   
Sbjct: 352 RNLTQRELP--TQDLEGF-PVTDKPSTGESKRAPRDKKANRRTNAKKSIKQFQGKPKRQA 408

Query: 421 PLKE 424
           P  +
Sbjct: 409 PKAK 412


>gi|238491382|ref|XP_002376928.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357]
 gi|220697341|gb|EED53682.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357]
          Length = 665

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 116/383 (30%), Positives = 183/383 (47%), Gaps = 31/383 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
            + + GL  +++  V   GY +PTPIQ   IP+ +Q  D+ G+A TG+GKTASF+LP   
Sbjct: 249 SWDESGLPKRLMELVNKVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTASFLLPLLV 308

Query: 59  ----MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
               +  I E    +   P  ++L PTRELA Q+    +K+ +     V  ++GG  FE 
Sbjct: 309 YIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEE 368

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q   L  GA+++I TPGR++D   R  L+++    +++DEADRM+D+GF   +  I   +
Sbjct: 369 QAYSLRNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDAL 428

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ------- 227
           P + +                       ++  + T +                       
Sbjct: 429 PVSNEKPDSEEAENSMAMSQHIGTKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGS 488

Query: 228 -----------------YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
                              K+   L  +L S +     I+F N K+N   +   +++ GF
Sbjct: 489 AGEAVDTVEQRVEFIAGEDKRKKRLGDILSSGEFRPPIIVFVNIKRNCDAIAREIKQWGF 548

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           S   +HG+  Q  R   L++ + G   ++VA+DLA RG+D+PDV  V NF++    E+Y 
Sbjct: 549 SSVTLHGSKTQEQREAALASVRNGQTDVLVATDLAGRGIDVPDVSLVINFNMATTIESYT 608

Query: 331 HRIGRTGRAGRHGKAFTLVAKED 353
           HRIGRTGRAG+ G A T +  ED
Sbjct: 609 HRIGRTGRAGKSGVAITFLGNED 631


>gi|138896049|ref|YP_001126502.1| DEAD-box ATP dependent DNA helicase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134267562|gb|ABO67757.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Geobacillus
           thermodenitrificans NG80-2]
          Length = 436

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 133/441 (30%), Positives = 213/441 (48%), Gaps = 16/441 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P V+ A+    + KPT IQ + IP  L+   + G +QTGTGKT +++LP++ 
Sbjct: 5   QFTRFPFQPFVIEAIQALRFYKPTEIQERIIPRALRGESMVGQSQTGTGKTHAYLLPIIE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVAD----NFEKYGKNYNLTVALLIGGIPFEAQNK 117
            ++  RA V+     I  PTRELA Q+        +   K+  +     IGG   +   +
Sbjct: 65  KIDPERAEVQAV---ITAPTRELATQIYHETLKITKFCPKDRMIVARCFIGGTDKQKALE 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL     ++I TPGRI D      L ++    LV+DEAD MLDMGFI  +  I + +P  
Sbjct: 122 KLHVQPHIVIGTPGRINDFIREQALDVHTARTLVVDEADLMLDMGFITDVDQIAARMPKE 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+ ++L+   + +++NP  I+V    +  + IEH          ++   L  
Sbjct: 182 LQMLVFSATIPEKLKPFLKKYMENPTFIQVEPKQTANKNIEH---VLIPLRGREKVKLLY 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         I+F N +K    +   L +QG  V  +HG++  R R K+++  ++   Q
Sbjct: 239 DVLVSYNPYLAIVFVNTRKRADEVADQLAEQGLKVGVLHGDLTPRERKKMMNQIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N+++P+  + YIHR GRT RAG  G A T+    D   I
Sbjct: 299 YVVATDLAARGIDIEGVSHVINYELPDDLQFYIHRAGRTARAGYSGIAATIYEPTDQDAI 358

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
             +EK+    V  D + G+   L P     +        K + +        + K+    
Sbjct: 359 ARLEKMGISFVHRDLVRGEWKDLPPW----NRRSKRAGEKEDDLALLVAKLKKAKQVKPG 414

Query: 416 QKSHIPLKESEKISKLQQDIQ 436
            K  +  +  +K  +L +  +
Sbjct: 415 YKKKLRAELEKKKKRLSRFKK 435


>gi|327462431|gb|EGF08756.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK1057]
          Length = 447

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 134/451 (29%), Positives = 205/451 (45%), Gaps = 12/451 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  + + TP+Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFFEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKK 118
            +L++    V+     I  P+RELAAQ+     +        +  A  +GG     Q  K
Sbjct: 61  QMLDEEADSVQAV---ITAPSRELAAQIYQAARQLASFSEKEIRGANYVGGTDKARQIGK 117

Query: 119 -LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTI---ENWLLSTKGRDKNAQIY 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             +EK+  K V  +  D        ++   A    +R+            ++KK     K
Sbjct: 355 RELEKMGIKFVPKMIKD-DEFQDTYDRDRRANREKSREKLDTEMLGLVKKKKKKIKPGYK 413

Query: 418 SHIPL--KESEKISKLQQDIQENDADSLGFR 446
             I     E  + +K  ++     A+    R
Sbjct: 414 KKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|326477276|gb|EGE01286.1| ATP-dependent RNA helicase DBP10 [Trichophyton equinum CBS 127.97]
          Length = 941

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 125/406 (30%), Positives = 199/406 (49%), Gaps = 41/406 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+P ++ A+   G+  PTPIQ KTIPL+L   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 95  FQAMGLNPNLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 154

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     +V   R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 155 LRNHSTKVGA-RGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMASN 213

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I   V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 214 PDIIIATPGRFLHLKVEMNLDLSSIRYAVFDEADRLFEMGFAAQLTEILHALPTSRQTLL 273

Query: 183 FSATMTDELQKV----------------------------------------SENFLQNP 202
           FSAT+   L +                                                 
Sbjct: 274 FSATLPKSLVEFARAGLQEPTLIRLDADSKISPDLQSAFFTVKSADKEGALLHILHDIIK 333

Query: 203 KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLC 262
                      A+          ++  K+  +         T  + I+F   K +V  + 
Sbjct: 334 IPTGETEAGKLAKKEAQEGKQGTSKKRKRADMKGPGAHGTPTEHSTIVFVATKHHVEYIA 393

Query: 263 HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322
           + L   GF+V   +G+++Q +R   + NF+ G   ++V +D+AARG+DIP + +V N+D 
Sbjct: 394 NLLRHSGFAVSYAYGSLNQTARKIQVQNFRAGISNILVVTDVAARGIDIPVLANVINYDF 453

Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           P++ + YIHR+GRT RAG+ G +++LV   D  ++  ++    +++
Sbjct: 454 PSQPKIYIHRVGRTARAGQKGWSYSLVRDSDAPYLIDLQLFSGRQL 499


>gi|229172846|ref|ZP_04300400.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus MM3]
 gi|228610591|gb|EEK67859.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus MM3]
          Length = 389

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 101/367 (27%), Positives = 186/367 (50%), Gaps = 11/367 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P +  A   AG+ + T IQ + IP +L+  DV   + TGTGKT +++LP+L  +      
Sbjct: 7   PFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI---NPE 63

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           V+ P+ ++L PTREL  Q+ +  +K+     ++ A LIGG   + Q +KL++   V++ +
Sbjct: 64  VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLKKHPRVIVGS 123

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGRIL+     KL M+ ++ +V DE D+++    +  +Q++       RQ + FSAT+T 
Sbjct: 124 PGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQLVFFSATITK 183

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
             +  + +    P+ + +    S +         TY    ++                 +
Sbjct: 184 AAEDAARDLAVEPQLVRITRAESKSLVE-----HTYIICERREKNDYVRRIMHMGDVKAV 238

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
            F N    +  +   L+ +     A+H    ++ R   +  F+ G +++++A+D+AARG+
Sbjct: 239 AFLNDPFRLDEITQKLQFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGI 298

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE---K 366
           DI D+ HV + ++P+  + YIHR GRTGR G+ G   +LV +++ + +    K +     
Sbjct: 299 DIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTQQEERKLLQFAKKLGIVFT 358

Query: 367 KVDWLNG 373
           K +  NG
Sbjct: 359 KQEMFNG 365


>gi|74187323|dbj|BAE22641.1| unnamed protein product [Mus musculus]
          Length = 406

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 123/378 (32%), Positives = 200/378 (52%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 33  SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E     ++  + L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 93  QIEL---DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 149

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q 
Sbjct: 150 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 209

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L      
Sbjct: 210 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL--Y 267

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 268 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 327

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL AR +D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V +ED + +  I
Sbjct: 328 TTDLLARSIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 387

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      ++ +  +++ L
Sbjct: 388 ETFYNTSIEEMPLNVADL 405


>gi|297561743|ref|YP_003680717.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846191|gb|ADH68211.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 566

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 124/358 (34%), Positives = 185/358 (51%), Gaps = 5/358 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL   +V  +   G   P PIQ  TIP  ++  DV G  +TG+GKT +F LP+L  
Sbjct: 38  FDSLGLPQDIVEELARNGVTTPFPIQAATIPDAIEGRDVLGCGRTGSGKTLAFGLPVLMR 97

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             + RA    PR LIL PTRELA QV D    Y +   + V  ++GG  +  Q  +L RG
Sbjct: 98  AAERRAAANRPRALILVPTRELAHQVRDALRTYARIVGVRVGDVVGGSSYTRQINELRRG 157

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +VL+ TPGR+ D  ++G   + ++E+ V+DEAD+M DMGF+P +  +   V    QTLL
Sbjct: 158 VEVLVATPGRLSDLIDQGACDLGDVEVSVLDEADQMCDMGFMPQVSELLDQVRPDGQTLL 217

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+  ++ K+   ++  P+   V+ P S    +EH  +    +               
Sbjct: 218 FSATLDGDVDKLVRKYMNEPRTHSVDPPVSQVAKMEHHLLKVLPRDKNTIVTQIA----- 272

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F   K     +   L + G    ++HG   Q  R + L+ F+EG IQ +VA+
Sbjct: 273 AREGRTILFVRSKYRADTISEQLAQAGVPCASLHGGKTQSVRTRTLAKFREGRIQALVAT 332

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           D+AARG+ +  +  V N D+P   ++Y+HR GRT RAG  G   +LVA    +    +
Sbjct: 333 DVAARGIHVDGIDMVVNVDLPTGHKDYLHRGGRTARAGASGLVVSLVAPNQRRMARRL 390


>gi|158257374|dbj|BAF84660.1| unnamed protein product [Homo sapiens]
          Length = 406

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 201/378 (53%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 33  SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E     ++  + L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 93  QIEL---DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 149

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q 
Sbjct: 150 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 209

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L      
Sbjct: 210 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL--Y 267

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 268 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 327

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V +ED + +  I
Sbjct: 328 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 387

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      ++ +  +++ L
Sbjct: 388 ETFYNTSIEEMPLNVADL 405


>gi|126309196|ref|XP_001369799.1| PREDICTED: similar to eukaryotic initiation factor 4AI [Monodelphis
           domestica]
          Length = 460

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 201/378 (53%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 87  SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 146

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E     ++  + L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 147 QIEL---DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 203

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q 
Sbjct: 204 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLSGNTQV 263

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L      
Sbjct: 264 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL--Y 321

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 322 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 381

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V +ED + +  I
Sbjct: 382 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRILRDI 441

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      ++ +  +++ L
Sbjct: 442 ETFYNTSIEEMPLNVADL 459


>gi|73621050|sp|Q4R8K5|IF4A1_MACFA RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|67968411|dbj|BAE00567.1| unnamed protein product [Macaca fascicularis]
          Length = 406

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 123/378 (32%), Positives = 200/378 (52%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 33  SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E     ++  + L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 93  QIEL---DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 149

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q 
Sbjct: 150 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 209

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L      
Sbjct: 210 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL--Y 267

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+  A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 268 ETLTITQAVIFINTRRKVDWLTEKMHARDFTASAMHGDMDQKERDVIMREFRSGSSRVLI 327

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V +ED + +  I
Sbjct: 328 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 387

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      ++ +  +++ L
Sbjct: 388 ETFYNTSIEEMPLNVADL 405


>gi|54696620|gb|AAV38682.1| eukaryotic translation initiation factor 4A, isoform 1 [synthetic
           construct]
 gi|61367705|gb|AAX43035.1| eukaryotic translation initiation factor 4A isoform 1 [synthetic
           construct]
          Length = 407

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 201/378 (53%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 33  SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E     ++  + L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 93  QIEL---DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 149

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q 
Sbjct: 150 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 209

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L      
Sbjct: 210 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL--Y 267

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 268 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 327

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V +ED + +  I
Sbjct: 328 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 387

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      ++ +  +++ L
Sbjct: 388 ETFYNTSIEEMPLNVADL 405


>gi|71051290|gb|AAH99392.1| Eif4a1 protein [Mus musculus]
          Length = 405

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 201/378 (53%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 32  SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 91

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E     ++  + L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 92  QIEL---DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 148

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q 
Sbjct: 149 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 208

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L      
Sbjct: 209 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL--Y 266

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 267 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 326

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V +ED + +  I
Sbjct: 327 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 386

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      ++ +  +++ L
Sbjct: 387 ETFYNTSIEEMPLNVADL 404


>gi|4503529|ref|NP_001407.1| eukaryotic initiation factor 4A-I isoform 1 [Homo sapiens]
 gi|21450625|ref|NP_659207.1| eukaryotic initiation factor 4A-I isoform 1 [Mus musculus]
 gi|40786436|ref|NP_955404.1| eukaryotic initiation factor 4A-I [Rattus norvegicus]
 gi|77735407|ref|NP_001029400.1| eukaryotic initiation factor 4A-I [Bos taurus]
 gi|154147660|ref|NP_001093666.1| eukaryotic initiation factor 4A-I [Sus scrofa]
 gi|326807000|ref|NP_001192066.1| eukaryotic initiation factor 4A-I [Callithrix jacchus]
 gi|149724255|ref|XP_001504824.1| PREDICTED: eukaryotic translation initiation factor 4A, isoform 1
           [Equus caballus]
 gi|291405131|ref|XP_002718844.1| PREDICTED: eukaryotic translation initiation factor 4A-like
           [Oryctolagus cuniculus]
 gi|301778191|ref|XP_002924476.1| PREDICTED: eukaryotic initiation factor 4A-I-like [Ailuropoda
           melanoleuca]
 gi|46397463|sp|P60842|IF4A1_HUMAN RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|46397464|sp|P60843|IF4A1_MOUSE RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|109892471|sp|Q3SZ54|IF4A1_BOVIN RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|219403|dbj|BAA02897.1| eukaryotic initiation factor 4AI [Homo sapiens]
 gi|2943740|dbj|BAA25075.1| eIF4A [Mus musculus]
 gi|16307020|gb|AAH09585.1| Eukaryotic translation initiation factor 4A, isoform 1 [Homo
           sapiens]
 gi|26346290|dbj|BAC36796.1| unnamed protein product [Mus musculus]
 gi|29612606|gb|AAH49915.1| Eukaryotic translation initiation factor 4A1 [Mus musculus]
 gi|39793992|gb|AAH63812.1| Eukaryotic translation initiation factor 4A1 [Rattus norvegicus]
 gi|49522221|gb|AAH73752.1| Eukaryotic translation initiation factor 4A, isoform 1 [Homo
           sapiens]
 gi|54696622|gb|AAV38683.1| eukaryotic translation initiation factor 4A, isoform 1 [Homo
           sapiens]
 gi|54696624|gb|AAV38684.1| eukaryotic translation initiation factor 4A, isoform 1 [Homo
           sapiens]
 gi|58864806|emb|CAI51943.1| eukaryotic translation initiation factor 4A1 [Mus musculus]
 gi|61357581|gb|AAX41409.1| eukaryotic translation initiation factor 4A isoform 1 [synthetic
           construct]
 gi|61357587|gb|AAX41410.1| eukaryotic translation initiation factor 4A isoform 1 [synthetic
           construct]
 gi|74138684|dbj|BAE27158.1| unnamed protein product [Mus musculus]
 gi|74138757|dbj|BAE27191.1| unnamed protein product [Mus musculus]
 gi|74139346|dbj|BAE40818.1| unnamed protein product [Mus musculus]
 gi|74139356|dbj|BAE40821.1| unnamed protein product [Mus musculus]
 gi|74139407|dbj|BAE40845.1| unnamed protein product [Mus musculus]
 gi|74141945|dbj|BAE41037.1| unnamed protein product [Mus musculus]
 gi|74151432|dbj|BAE38831.1| unnamed protein product [Mus musculus]
 gi|74151508|dbj|BAE38862.1| unnamed protein product [Mus musculus]
 gi|74177669|dbj|BAE38935.1| unnamed protein product [Mus musculus]
 gi|74185163|dbj|BAE39182.1| unnamed protein product [Mus musculus]
 gi|74188940|dbj|BAE39241.1| unnamed protein product [Mus musculus]
 gi|74189138|dbj|BAE39326.1| unnamed protein product [Mus musculus]
 gi|74189153|dbj|BAE39332.1| unnamed protein product [Mus musculus]
 gi|74193609|dbj|BAE22765.1| unnamed protein product [Mus musculus]
 gi|74198159|dbj|BAE35256.1| unnamed protein product [Mus musculus]
 gi|74201277|dbj|BAE26099.1| unnamed protein product [Mus musculus]
 gi|74204464|dbj|BAE39979.1| unnamed protein product [Mus musculus]
 gi|74208421|dbj|BAE26397.1| unnamed protein product [Mus musculus]
 gi|74211475|dbj|BAE26477.1| unnamed protein product [Mus musculus]
 gi|74220076|dbj|BAE40614.1| unnamed protein product [Mus musculus]
 gi|74220399|dbj|BAE31424.1| unnamed protein product [Mus musculus]
 gi|74268155|gb|AAI03131.1| Eukaryotic translation initiation factor 4A, isoform 1 [Bos taurus]
 gi|85792232|gb|ABC84193.1| eukaryotic translation initiation factor 4A isoform 1 [Sus scrofa]
 gi|90076216|dbj|BAE87788.1| unnamed protein product [Macaca fascicularis]
 gi|119610573|gb|EAW90167.1| eukaryotic translation initiation factor 4A, isoform 1, isoform
           CRA_b [Homo sapiens]
 gi|119610574|gb|EAW90168.1| eukaryotic translation initiation factor 4A, isoform 1, isoform
           CRA_b [Homo sapiens]
 gi|123992423|gb|ABM83970.1| eukaryotic translation initiation factor 4A, isoform 1 [synthetic
           construct]
 gi|123999458|gb|ABM87287.1| eukaryotic translation initiation factor 4A, isoform 1 [synthetic
           construct]
 gi|149053069|gb|EDM04886.1| eukaryotic translation initiation factor 4A1, isoform CRA_c [Rattus
           norvegicus]
 gi|168279007|dbj|BAG11383.1| eukaryotic initiation factor 4A-I [synthetic construct]
 gi|189069177|dbj|BAG35515.1| unnamed protein product [Homo sapiens]
 gi|296476703|gb|DAA18818.1| eukaryotic translation initiation factor 4A isoform 1 [Bos taurus]
 gi|227238|prf||1617105B initiation factor 4AI
          Length = 406

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 201/378 (53%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 33  SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E     ++  + L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 93  QIEL---DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 149

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q 
Sbjct: 150 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 209

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L      
Sbjct: 210 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL--Y 267

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 268 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 327

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V +ED + +  I
Sbjct: 328 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 387

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      ++ +  +++ L
Sbjct: 388 ETFYNTSIEEMPLNVADL 405


>gi|148908269|gb|ABR17249.1| unknown [Picea sitchensis]
          Length = 507

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 105/393 (26%), Positives = 187/393 (47%), Gaps = 20/393 (5%)

Query: 2   DFADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQ--RHDVCGIAQTGTGKTASFVLP 58
            F +L LSP+++  +  + G+ KP+ IQ  ++P++L     ++   A  G+GKT  FVL 
Sbjct: 106 TFEELNLSPELLRGLYSEMGFEKPSKIQAISLPMILTPPYQNLIAQAHNGSGKTTCFVLG 165

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT--VALLIGGIPFEAQN 116
           ML+ ++    ++  P+ L + PTRELA Q  +   K GK+  +T   A+      + + +
Sbjct: 166 MLSRVDP---KIAAPQALCVCPTRELAMQNQEVLVKMGKHTGITSVCAVPTDAGNYVSTS 222

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++      V+I TPG +    +   L   +I+ILV DEAD ML                 
Sbjct: 223 RRGPVNDQVVIGTPGTLKKWMSTKVLSTRHIKILVFDEADHMLAQDGFQDDSLRIIRDIQ 282

Query: 177 TRQTLL----FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
             +       FSAT  + +++ +   +    ++ V     + + I+   V    + +K  
Sbjct: 283 KNRDDCQILLFSATYDENVKQFTTRVISKANQVFVKKEDLSLDVIKQYLVKCPDELAKVE 342

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L  ++    + +   IIF   ++N   L   LE +G+   +I G +    R +++  F+
Sbjct: 343 VLKDRIFPLAEKLGQSIIFVRTRENASMLHSKLEAEGYKCTSIQGGLKLEDRDRVIKEFR 402

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVP-------NRAENYIHRIGRTGRAGRHGKA 345
            G  ++++++D+ ARG D   V  V NFD+P          E Y+HRIGR+GR GR G A
Sbjct: 403 TGLTKILISTDVLARGFDQAQVTLVVNFDLPVKHASPDPDYEVYLHRIGRSGRFGRKGAA 462

Query: 346 FTLVAKE-DIKHIDAIEKLIEKKVDWLNGDLSS 377
           F  +  + D + +  IE+  E++V  +  D   
Sbjct: 463 FNFICNDRDERIMSKIERYFERQVPEVPWDSED 495


>gi|149240601|ref|XP_001526175.1| ATP-dependent RNA helicase ded1 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152013500|sp|A5DZE6|DED1_LODEL RecName: Full=ATP-dependent RNA helicase DED1
 gi|146450298|gb|EDK44554.1| ATP-dependent RNA helicase ded1 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 664

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 129/393 (32%), Positives = 203/393 (51%), Gaps = 19/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L   +V  +  + + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+
Sbjct: 176 SFTAPPLDELLVENIKLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLS 235

Query: 62  ILEKGRA------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                                  P  L++ PTREL +Q+ D  +K+     +   ++ GG
Sbjct: 236 ESYMNGPAPIPESTGAFSSHKVYPTILVMAPTRELVSQIYDESKKFAYRSWVRPCVVYGG 295

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q ++L+RG D+L+ TPGR+ D   RG++ + NI+ LV+DEADRMLDMGF P I++
Sbjct: 296 ADIGNQIRQLDRGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRH 355

Query: 170 ITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I               +FSAT   ++Q ++ +FL++   + V    ST+E I    +   
Sbjct: 356 IVQECDMPDVQDRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVLYVE 415

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            +  K   L      + ++    I+F   K+   NL   L  QGF   AIHG+  Q  R 
Sbjct: 416 DEEKKSVILDLL---NANSEGLTIVFTETKRMADNLADFLYDQGFPATAIHGDRSQYERE 472

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           K L+ FK G   ++VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A
Sbjct: 473 KALAAFKSGQAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIA 532

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
                + +   +  +  L+ +    +   L+ +
Sbjct: 533 TAFFNRNNKNIVKGMLDLLTEANQEVPDFLNKI 565


>gi|71018173|ref|XP_759317.1| hypothetical protein UM03170.1 [Ustilago maydis 521]
 gi|74701966|sp|Q4P9P3|DRS1_USTMA RecName: Full=ATP-dependent RNA helicase DRS1
 gi|46099167|gb|EAK84400.1| hypothetical protein UM03170.1 [Ustilago maydis 521]
          Length = 932

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 141/515 (27%), Positives = 229/515 (44%), Gaps = 57/515 (11%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    LS  V+ A+    + KPTPIQ +TIP+ L   D+   A TG+GKTA+F++P + 
Sbjct: 334 SFGAFDLSRPVLRALSSLSFHKPTPIQSRTIPIALAGKDIVAGAVTGSGKTAAFMIPTIE 393

Query: 62  ILEKGRARVRMPRTL----ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            L                 IL PTRELA Q     +   K  ++   L +GG+  ++Q  
Sbjct: 394 RLTWRAKTRTPHEAKSRVLILAPTRELAIQCYSVGKSIAKFTDIRFCLCVGGLSVKSQEA 453

Query: 118 KLERGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPY-IQNITSLVP 175
           +L+   +V+I TPGR++DH         ++IEILV+DEADRML+ GF     + + S   
Sbjct: 454 ELKLRPEVVIATPGRLIDHVRNSASFTLDDIEILVMDEADRMLEDGFADELNEIVKSCPK 513

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS----------------------- 212
             RQT+LFSATMTD+++++    L+ P R+ V+   +                       
Sbjct: 514 GARQTMLFSATMTDDVEQLVRLSLKRPVRLFVDPKRTTAKKLIQEFVRVRGTGTGGVAGA 573

Query: 213 -----TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
                  +               +   L   L ++      +IF   KK    L      
Sbjct: 574 DGLSGIQDQPATWISGGRKSEDAQRPALLLSLCTRTFTSQTMIFVRSKKLAHQLKIVFGL 633

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            G S   +HG++ Q  R+  L++F++G    ++A+DLA+RGLDI  V  V N+D+P + E
Sbjct: 634 LGLSAGELHGDLSQEQRIDALTDFRDGKTDFLLATDLASRGLDIKGVQTVINYDMPGQFE 693

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHID-AIEK-----------------LIEKKVD 369
            Y+HR+GRT RAGR+G+A TLV + D + +  AI+K                  + + ++
Sbjct: 694 AYLHRVGRTARAGRNGRAVTLVGEADRRMLKLAIKKSSAEQIKHRIIPSAVAAHMCETLE 753

Query: 370 WLNGDLSSL---NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESE 426
            L  ++ ++       + + IA+    +  N        F R K+ +    S      + 
Sbjct: 754 RLKPEVDAVLREEKEEKALRIAEMELKKGENMANHADEIFSRPKRTWFQSGSEKTQASAL 813

Query: 427 KISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKL 461
             +  Q  +    +     +         K R K+
Sbjct: 814 SKAGYQATMDARSSSKQ--KDKYAGLSRKKRRSKM 846


>gi|307173630|gb|EFN64481.1| DEAD-box helicase Dbp80 [Camponotus floridanus]
          Length = 482

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 100/393 (25%), Positives = 173/393 (44%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  L L P ++  V   G+  P+ IQ   +P +L     ++   +Q+GTGKTA+FVL M
Sbjct: 96  SFEALHLKPALLQGVYGMGFNAPSRIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 155

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++        P+ L L PT ELA Q  +   K  +                ++  K+
Sbjct: 156 LSRVDTT---KDYPQVLCLSPTYELAIQTGEVAAKMSRFCPEIKIKYAVRGEEISRGSKI 212

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +   L      ++ +    +   G       I  L+P T Q
Sbjct: 213 TEHIIIGTPGKVLDWGQKFKFFDLSKISVFVLDEADVMIATQGHQDQCIRIHKLLPRTCQ 272

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSAT   E+   +E  + NP  I++     + + I+  ++       K  A+    +
Sbjct: 273 MMFFSATYEPEVMNFAEIIVSNPIIIKLLRQQESLDNIKQYYIKCKNVDEKYTAIT--NI 330

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   IIFC+ KK    L   + + G +V  + G++    R+ +L  F+ G  +++
Sbjct: 331 YGVITIGQAIIFCHTKKTASWLAEKMTRDGHAVAILSGDLTVEQRISVLDRFRAGLEKVL 390

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           + +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  L+ +  
Sbjct: 391 ITTNVLARGIDVEQVTIVVNFDLPMDQKRQADCETYLHRIGRTGRFGKSGIAINLIDSPH 450

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
            ++    IE    KK+ +L+ + +     +EKI
Sbjct: 451 AMQLCKDIENHFGKKIHYLDAEDAD---EIEKI 480


>gi|256786770|ref|ZP_05525201.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
 gi|289770661|ref|ZP_06530039.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
 gi|289700860|gb|EFD68289.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
          Length = 528

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 128/388 (32%), Positives = 195/388 (50%), Gaps = 7/388 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L L  +++ A+ D G  +P PIQ  T+P  L   DV G  +TG+GKT +F L +L 
Sbjct: 56  TFAELDLPARMLAALGDQGVTEPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLA 115

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                RA  R P  L+L PTRELA QV D    Y +   L  A ++GG+    Q   L  
Sbjct: 116 RTAGKRAEPRRPLALVLVPTRELAQQVTDALTPYARAVGLRSATVVGGMSIGRQAGALRS 175

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+V++ TPGR+ D  +RG   + ++ I V+DEAD+M DMGF+P +  +   V    Q +
Sbjct: 176 GAEVVVATPGRLKDLIDRGDCALGDVTITVLDEADQMTDMGFMPQVTALLDQVAADGQRM 235

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   + K+   +L +P    V+  +    T+EH  +    +        +  ++ 
Sbjct: 236 LFSATLDRNVDKLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVQDEDK-----QRATIEI 290

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F + K  V  L   L K G     +HG   Q  R + L+ FK+G +  +VA
Sbjct: 291 AARDGRVIMFLDTKHRVDRLVKHLLKSGVRAAGLHGGKSQPQRTRTLAQFKDGQVTALVA 350

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV  +  + +  + 
Sbjct: 351 TNVAARGIHVDNLDLVVNVDPPGDHKDYLHRGGRTARAGESGSVVTLVTPDQRREMTRLM 410

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
            L           + S    L +I  AQ
Sbjct: 411 SLAGITPQVTP--VRSGEAELARITGAQ 436


>gi|237830427|ref|XP_002364511.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211962175|gb|EEA97370.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|221487590|gb|EEE25822.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
 gi|221507384|gb|EEE32988.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 569

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 114/366 (31%), Positives = 189/366 (51%), Gaps = 6/366 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L +   V  A+ +    + T IQ K+IP +L+  DV G A+TG+GKT +F++P +
Sbjct: 85  VTFESLDICDPVKKALAEMKMERLTEIQAKSIPRLLEGRDVLGAAKTGSGKTLAFLVPAV 144

Query: 61  TILEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L + +   R    +I + PTREL+ Q+ D   +  K    T+ L+IGG   + + +KL
Sbjct: 145 ELLYQVKFLPRNGTGVIVISPTRELSLQIFDVAAELAKFLPQTLGLVIGGANRKHEVEKL 204

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEIL-VIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++G ++L+ TPGR+LDH    K    +  +  VIDEADR+L +GF   +  I  ++P TR
Sbjct: 205 QKGVNILVATPGRLLDHLQNTKGFQYSNLLSLVIDEADRILQIGFEEEMNAILQMLPQTR 264

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT LFSAT + ++  ++   L+ P  +       T  T+           +++  LL   
Sbjct: 265 QTCLFSATQSAKVADLARLSLKKPVFV---EVKDTVATVRGIQQGYVVCPAEERFLLLFT 321

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  ++F +   +V                IHG   Q +RM    +F      +
Sbjct: 322 FLKKNREKKIMVFFSSCMSVRFHDELFNYIDLPTTCIHGKKKQNARMSTYYDFCNAEKGI 381

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP V  +  +D P+  + YIHR+GRT R AG  GKA   +  E+I  +
Sbjct: 382 LLCTDVAARGLDIPKVDWIVQYDPPDDPKEYIHRVGRTARGAGGTGKALLFLMAEEIGFL 441

Query: 358 DAIEKL 363
             +++ 
Sbjct: 442 RYLKQA 447


>gi|158259929|dbj|BAF82142.1| unnamed protein product [Homo sapiens]
          Length = 406

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 200/378 (52%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 33  SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E     ++  + L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 93  QIEL---DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 149

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q 
Sbjct: 150 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 209

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L      
Sbjct: 210 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL--Y 267

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ + ++
Sbjct: 268 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRALI 327

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V +ED + +  I
Sbjct: 328 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 387

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      ++ +  +++ L
Sbjct: 388 ETFYNTSIEEMPLNVADL 405


>gi|73966209|ref|XP_851852.1| PREDICTED: similar to eukaryotic translation initiation factor 4A,
           isoform 1 isoform 2 [Canis familiaris]
          Length = 406

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 201/378 (53%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 33  SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E     ++  + L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 93  QIEL---DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 149

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q 
Sbjct: 150 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 209

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L      
Sbjct: 210 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL--Y 267

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 268 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 327

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V +ED + +  I
Sbjct: 328 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 387

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      ++ +  +++ L
Sbjct: 388 ETFYNTSIEEMPLNVADL 405


>gi|21222144|ref|NP_627923.1| DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
 gi|7210999|emb|CAB76979.1| putative DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
          Length = 528

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 128/388 (32%), Positives = 195/388 (50%), Gaps = 7/388 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L L  +++ A+ D G  +P PIQ  T+P  L   DV G  +TG+GKT +F L +L 
Sbjct: 56  TFAELDLPARMLAALGDQGVTEPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLA 115

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                RA  R P  L+L PTRELA QV D    Y +   L  A ++GG+    Q   L  
Sbjct: 116 RTAGKRAEPRRPLALVLVPTRELAQQVTDALTPYARAVGLRSATVVGGMSIGRQAGALRS 175

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+V++ TPGR+ D  +RG   + ++ I V+DEAD+M DMGF+P +  +   V    Q +
Sbjct: 176 GAEVVVATPGRLKDLIDRGDCALGDVTITVLDEADQMTDMGFMPQVTALLDQVAADGQRM 235

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   + K+   +L +P    V+  +    T+EH  +    +        +  ++ 
Sbjct: 236 LFSATLDRNVDKLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVQDEDK-----QRATIEI 290

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F + K  V  L   L K G     +HG   Q  R + L+ FK+G +  +VA
Sbjct: 291 AARDGRVIMFLDTKHRVDRLVKHLLKSGVRAAGLHGGKSQPQRTRTLAQFKDGQVTALVA 350

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV  +  + +  + 
Sbjct: 351 TNVAARGIHVDNLDLVVNVDPPGDHKDYLHRGGRTARAGESGSVVTLVTPDQRREMTRLM 410

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
            L           + S    L +I  AQ
Sbjct: 411 SLAGITPQVTP--VRSGEAELARITGAQ 436


>gi|328912646|gb|AEB64242.1| DEAD-box RNA helicase [Bacillus amyloliquefaciens LL3]
          Length = 447

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 119/362 (32%), Positives = 187/362 (51%), Gaps = 3/362 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L P ++ AV   G+ +PT IQ + IP VL+   V G +QTGTGKT +++LP+L 
Sbjct: 14  KFDGYNLKPFIIDAVHRLGFYEPTDIQKRLIPAVLKNESVIGQSQTGTGKTHAYLLPILN 73

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++ G   V+   T           Q A    +  ++  +     IGG   +    KL+ 
Sbjct: 74  RIDPGSDTVQAVITAPTRELANQIYQEALKITQGAEDEQIRTKCFIGGTDKQKSIDKLKT 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI D      L +   + LVIDEAD MLD+GF+  +  I S +P   Q L
Sbjct: 134 QPHLVVGTPGRIADLIKAQALNVYKAQSLVIDEADLMLDLGFLEDVDYIGSRMPEELQML 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+ ++L+   + +++NPK   V     TAE IEH  V +  +   K       + S
Sbjct: 194 VFSATIPEKLKPFLKKYMENPKYAHVEPKRITAEKIEHVLVPSKQRDKDKLLFD---MMS 250

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                 GI+F N K    ++   L ++G  +  +HG +  R R K++    +     ++A
Sbjct: 251 NLNPYLGIVFANTKNTADHIAKYLTEKGMRIGLLHGGLTPRERKKVMKQINDLEFTYVIA 310

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+DI  V HV N+++P+  + Y+HR+GRT RAG  G+A T+    D   +  +E
Sbjct: 311 TDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQALTIYELSDEDALVRLE 370

Query: 362 KL 363
           K+
Sbjct: 371 KM 372


>gi|308174303|ref|YP_003921008.1| DEAD-box RNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|307607167|emb|CBI43538.1| DEAD-box RNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|328554249|gb|AEB24741.1| DEAD-box RNA helicase [Bacillus amyloliquefaciens TA208]
          Length = 438

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 119/362 (32%), Positives = 187/362 (51%), Gaps = 3/362 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L P ++ AV   G+ +PT IQ + IP VL+   V G +QTGTGKT +++LP+L 
Sbjct: 5   KFDGYNLKPFIIDAVHRLGFYEPTDIQKRLIPAVLKNESVIGQSQTGTGKTHAYLLPILN 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++ G   V+   T           Q A    +  ++  +     IGG   +    KL+ 
Sbjct: 65  RIDPGSDTVQAVITAPTRELANQIYQEALKITQGAEDEQIRTKCFIGGTDKQKSIDKLKT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI D      L +   + LVIDEAD MLD+GF+  +  I S +P   Q L
Sbjct: 125 QPHLVVGTPGRIADLIKAQALNVYKAQSLVIDEADLMLDLGFLEDVDYIGSRMPEELQML 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+ ++L+   + +++NPK   V     TAE IEH  V +  +   K       + S
Sbjct: 185 VFSATIPEKLKPFLKKYMENPKYAHVEPKRITAEKIEHVLVPSKQRDKDKLLFD---MMS 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                 GI+F N K    ++   L ++G  +  +HG +  R R K++    +     ++A
Sbjct: 242 NLNPYLGIVFANTKNTADHIAKYLTEKGMRIGLLHGGLTPRERKKVMKQINDLEFTYVIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+DI  V HV N+++P+  + Y+HR+GRT RAG  G+A T+    D   +  +E
Sbjct: 302 TDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQALTIYELSDEDALVRLE 361

Query: 362 KL 363
           K+
Sbjct: 362 KM 363


>gi|281352202|gb|EFB27786.1| hypothetical protein PANDA_013869 [Ailuropoda melanoleuca]
          Length = 400

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 201/378 (53%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 27  SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 86

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E     ++  + L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 87  QIEL---DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 143

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q 
Sbjct: 144 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 203

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L      
Sbjct: 204 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL--Y 261

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 262 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 321

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V +ED + +  I
Sbjct: 322 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 381

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      ++ +  +++ L
Sbjct: 382 ETFYNTSIEEMPLNVADL 399


>gi|224036359|pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-Eif4a
 gi|224036361|pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-Eif4a
          Length = 414

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 201/378 (53%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 41  SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E     ++  + L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 101 QIEL---DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 157

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q 
Sbjct: 158 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 217

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L      
Sbjct: 218 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL--Y 275

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 276 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 335

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V +ED + +  I
Sbjct: 336 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 395

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      ++ +  +++ L
Sbjct: 396 ETFYNTSIEEMPLNVADL 413


>gi|124801080|ref|XP_001349607.1| DEAD box helicase, UAP56 [Plasmodium falciparum 3D7]
 gi|3845186|gb|AAC71878.1| DEAD box helicase, UAP56 [Plasmodium falciparum 3D7]
 gi|156072122|gb|ABU45412.1| DEAD-box helicase 1 [Plasmodium falciparum]
          Length = 457

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 99/396 (25%), Positives = 172/396 (43%), Gaps = 24/396 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ ++G+  P+ +Q +TIP  +   D+   A++G GKTA FVL +L  
Sbjct: 57  FKDFFLKPELLRAISESGFEHPSEVQQETIPAAITGTDILCQAKSGMGKTAVFVLSILQQ 116

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG------------- 109
           L+    +       +                       L   +                 
Sbjct: 117 LDTNENQDMQDTKEMNNDNNNNGDNKFVRCLGLAHTRELAYQIKNEFDRFSKYLKNVRCE 176

Query: 110 -------IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM- 161
                  +    +  K +    ++I TPGRIL       L+ + I+  V+DE D+ L+  
Sbjct: 177 VVYGGISMNKHIKLFKEDNIPHIIIGTPGRILALIREKYLITDKIQHFVLDECDKCLEKL 236

Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
                +Q I    P  +Q + FSATM  E++ V + FLQNP  I ++  +          
Sbjct: 237 DMRSDVQKIFISTPLKKQVMFFSATMAKEMRDVCKKFLQNPVEIFIDDEAKLKLHGLLQH 296

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
                +  K   L++  +         IIF       + L   L +  F   AIHG ++Q
Sbjct: 297 YVKLQEKDKTRKLIE--ILDALEFNQVIIFVKSVTRAITLDKLLTECNFPSIAIHGGLEQ 354

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           + R++    FK+   +++V++DL  RG+DI  V  V N+D+P  +++Y+HR+GR GR G 
Sbjct: 355 QERIERYDKFKKFENRILVSTDLFGRGIDIERVNIVINYDMPENSDSYLHRVGRAGRFGT 414

Query: 342 HGKAFTLV-AKEDIKHIDAIEKLIEKKVDWLNGDLS 376
            G A T V ++ED   ++ ++   E  +  +   + 
Sbjct: 415 KGLAVTFVSSQEDTLALNEVQTRFEVAISEMPNKID 450


>gi|301101090|ref|XP_002899634.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262103942|gb|EEY61994.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 456

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 120/366 (32%), Positives = 191/366 (52%), Gaps = 7/366 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL  K++  ++  G   PT IQ +  P+ L   D+ GIA+TG+GKT +F LPM+ 
Sbjct: 63  SFMHLGLDRKMLQTLMKLGLEAPTAIQTQAFPVALSGRDLIGIAKTGSGKTLAFTLPMVR 122

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +   R   R   P  L+L PTRELA Q     +K+   Y  + A + GG     Q + L
Sbjct: 123 HVMDQRELQRGEGPIALVLAPTRELAHQTYVQAKKFLAVYGASCAAIYGGAGKWEQVQAL 182

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++G +V++ TPGR+++   +    MN +  +V+DEADRM +MGF P ++++   V   RQ
Sbjct: 183 KKGVEVVVATPGRLIEMIRKKAAPMNRVTFVVLDEADRMFEMGFEPQLRSVMGQVRPDRQ 242

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT    ++ ++ + L NP ++ V       E I    V      +K   L+ ++ 
Sbjct: 243 ILMFSATFRRRIETLALDVLTNPVKLTVGQIGQANEDIRQIAVVLPGHGAKWPWLMSKIR 302

Query: 240 QSQDTMKNGIIF-CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              D  +  I          +    ++         +HG+  Q+ R + L+ FK G  ++
Sbjct: 303 SLVDEGRLLIFAGSKAGCEELAKNLAVAFPAAPALCLHGDKTQQERAEALTKFKHGACRV 362

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG----RHGKAFTLVAKEDI 354
           +VA+D+AARGLD+ DV +V NFDV    + ++HRIGRTGR G      G A+TLV + + 
Sbjct: 363 LVATDVAARGLDVKDVKNVVNFDVAKSIDTHVHRIGRTGRMGLEGFEPGTAYTLVTRNES 422

Query: 355 KHIDAI 360
           +    +
Sbjct: 423 QFAAQL 428


>gi|222635678|gb|EEE65810.1| hypothetical protein OsJ_21540 [Oryza sativa Japonica Group]
          Length = 921

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 101/375 (26%), Positives = 167/375 (44%), Gaps = 14/375 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LSP  +  V  AGY + T +Q  T+P++L+  DV   A+TGTGKT +F+LP + +
Sbjct: 455 FDECSLSPLTLKGVKAAGYERMTAVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPAIEV 514

Query: 63  ----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                     + R P ++++       A  A         ++ ++ + +         ++
Sbjct: 515 VSKLPPIDCDKKRPPISVVVVCPTRELADQAAAEANKLLKFHPSIGVQLVIGGTRMALEQ 574

Query: 119 LERGADVLICTPGRILDHFNRGKLLM------NNIEILVIDEADRMLDMGFIPYIQNITS 172
                +             +  +           +++L++DEADR+LDMGF   I+ I +
Sbjct: 575 KRMHTNPCQILVATPGRLKDHMENTPGFATRLMGVKVLILDEADRLLDMGFRTDIERIVA 634

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +P  RQTLLFSAT+ DE+++V    ++            + ET              K 
Sbjct: 635 ALPKQRQTLLFSATVPDEVRQVCHIAMKRDLEFVNTVEEGSEETHSQVKQMHVVAPLDKQ 694

Query: 233 ALLQQ----LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
             +         S++     I+FC   K    +   L +   +V  IH    Q  R +I 
Sbjct: 695 FSILYGLLTDHISENVDYKVIVFCTTAKVTSLVAELLSELKLNVREIHSRKPQSYRTRIS 754

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             FKE    ++V+SD++ARG+D P+V  V    VP   E YIHR+GRTGR G  G    L
Sbjct: 755 KEFKESKGLILVSSDVSARGVDYPNVTLVVQMGVPTDREQYIHRLGRTGRRGNEGSGILL 814

Query: 349 VAKEDIKHIDAIEKL 363
           +A  +   + +I+ L
Sbjct: 815 LAPWEEYFLRSIKDL 829


>gi|143454912|sp|Q0DBU5|RH31_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 31
          Length = 547

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 101/375 (26%), Positives = 167/375 (44%), Gaps = 14/375 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LSP  +  V  AGY + T +Q  T+P++L+  DV   A+TGTGKT +F+LP + +
Sbjct: 81  FDECSLSPLTLKGVKAAGYERMTAVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPAIEV 140

Query: 63  ----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                     + R P ++++       A  A         ++ ++ + +         ++
Sbjct: 141 VSKLPPIDCDKKRPPISVVVVCPTRELADQAAAEANKLLKFHPSIGVQLVIGGTRMALEQ 200

Query: 119 LERGADVLICTPGRILDHFNRGKLLM------NNIEILVIDEADRMLDMGFIPYIQNITS 172
                +             +  +           +++L++DEADR+LDMGF   I+ I +
Sbjct: 201 KRMHTNPCQILVATPGRLKDHMENTPGFATRLMGVKVLILDEADRLLDMGFRTDIERIVA 260

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +P  RQTLLFSAT+ DE+++V    ++            + ET              K 
Sbjct: 261 ALPKQRQTLLFSATVPDEVRQVCHIAMKRDLEFVNTVEEGSEETHSQVKQMHVVAPLDKQ 320

Query: 233 ALLQQ----LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
             +         S++     I+FC   K    +   L +   +V  IH    Q  R +I 
Sbjct: 321 FSILYGLLTDHISENVDYKVIVFCTTAKVTSLVAELLSELKLNVREIHSRKPQSYRTRIS 380

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             FKE    ++V+SD++ARG+D P+V  V    VP   E YIHR+GRTGR G  G    L
Sbjct: 381 KEFKESKGLILVSSDVSARGVDYPNVTLVVQMGVPTDREQYIHRLGRTGRRGNEGSGILL 440

Query: 349 VAKEDIKHIDAIEKL 363
           +A  +   + +I+ L
Sbjct: 441 LAPWEEYFLRSIKDL 455


>gi|94984710|ref|YP_604074.1| DEAD/DEAH box helicase-like protein [Deinococcus geothermalis DSM
           11300]
 gi|94554991|gb|ABF44905.1| ATP-dependent RNA helicase DbpA [Deinococcus geothermalis DSM
           11300]
          Length = 591

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 200/377 (53%), Gaps = 10/377 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F  L ++P++   + + G  + +PIQ +++P  L   D+ G A+TGTGKT +F LP++
Sbjct: 1   MNFDQL-IAPELAARLAERGITEASPIQAESLPHTLAGKDLIGRARTGTGKTLAFALPII 59

Query: 61  TI-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                      R R R+PR +++ PTRELA QVA+ F K G     +   + GG  +  Q
Sbjct: 60  QNLTAPDGRGSRERGRLPRAIVIAPTRELAKQVAEEFSKSGPQL--STVTVYGGAAYGPQ 117

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG DV++ TPGR++DH  RG L ++ I+  V+DEAD ML +GF   I+ I    P
Sbjct: 118 ENALRRGVDVVVGTPGRLIDHLERGNLDLSAIQYAVLDEADEMLSVGFADAIETILQQTP 177

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT+LFSAT+ DE+ +++  +L+ P  +  +                  +  +    +
Sbjct: 178 AARQTMLFSATLNDEIHRLARKYLREPVVV--DLVGEGKSQAAQSVEHLKVKVGRTRTRV 235

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              L +    +  I+F   K+    L + L  +G    A+HG++ Q  R + L  F+ G 
Sbjct: 236 LADLLTVYNPEKAIVFTRTKREADELANELIHRGIESEALHGDLAQSQRERALGAFRSGR 295

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           + ++VA+D+AARGLDIP+V  V  + +P   E+Y+HR GRTGRAGR G A  +    + +
Sbjct: 296 VGVLVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIVMYGDRENR 355

Query: 356 HIDAIEKLIEKKVDWLN 372
            +  +E     +     
Sbjct: 356 ELRNLEYRTGVQFKERP 372


>gi|168022304|ref|XP_001763680.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685173|gb|EDQ71570.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 549

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 107/385 (27%), Positives = 172/385 (44%), Gaps = 6/385 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FAD    PK+   +  AGY  PTP+Q++TIP  L+  DV   A+TG+GKTASF+LP++
Sbjct: 141 LQFADCKFLPKLQGNLEAAGYETPTPVQMQTIPAALKGRDVLVSAETGSGKTASFLLPII 200

Query: 61  TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                    G +    P  ++L PTREL AQV +  +   K      AL++GG     Q 
Sbjct: 201 MRCCLIRIHGLSEREKPLAMVLAPTRELCAQVEEQAKVLAKGLPFKTALVVGGDAMPQQV 260

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            ++++G +++I TPGR++D  ++   L      ++  +    L                 
Sbjct: 261 HRIKQGVELIIGTPGRLIDLLSKHDDLTLQGVCILALDEVDCLLESGFRDQVLQLVQALA 320

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q L++SAT+   +++ S + L+NP  I V TP      +    +    +  KK     
Sbjct: 321 MPQILMYSATILPAIERFSSSLLKNPLIISVGTPRQPNRAVHQIILWVETKNKKKKLFEI 380

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
              +        +   ++  + +         G    ++HG    + R + L NF  G I
Sbjct: 381 LKSRVHYRPPVVVFVNSRMGSDLLAEAIRTVTGIQARSLHGEKSIKDRRETLKNFLMGEI 440

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+ +  RGLD+  V  V  FD P+  E YIH IGR  R    G A   V  E    
Sbjct: 441 PVIVATGVLGRGLDLLRVTQVIIFDFPSSIEEYIHMIGRASRLSNAGSAMVFVNDESKAL 500

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPP 381
              +  L++     +  +L  LN P
Sbjct: 501 FKELVALLKASRTVVPREL--LNSP 523


>gi|146422477|ref|XP_001487176.1| eukaryotic initiation factor 4A [Meyerozyma guilliermondii ATCC
           6260]
 gi|152032535|sp|A5DB98|IF4A_PICGU RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|146388297|gb|EDK36455.1| eukaryotic initiation factor 4A [Meyerozyma guilliermondii ATCC
           6260]
          Length = 396

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 203/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L P +V  +   GY  P+ IQ + I  + +  DV   AQ+GTGKTA+F +  L 
Sbjct: 23  SFDDLNLKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQ 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++    ++  + LIL PTRELA Q+ +     G   N+TV   IGG   +   +  + 
Sbjct: 83  RIDEN---LKATQALILAPTRELALQIQNVITHIGLYLNVTVHASIGGTSMKDDIEAFKS 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D   R     + +++ ++DEAD ML  GF   I NI  L+P T Q +
Sbjct: 140 GVQIVVGTPGRVFDMIERRFFRTDKVKMFIMDEADEMLSSGFKEQIYNIFRLLPETTQVV 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+ NP RI V     T E I+  ++    +  K   L       
Sbjct: 200 LLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVEQEDFKFDCLCDL--YD 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN +  V  L   L+ + F+V AIH ++ Q  R  I++ F+ G+ ++++A
Sbjct: 258 SISVTQAVIFCNTRSKVEFLTTKLKAENFTVSAIHADLPQSDRDTIMNEFRSGSSRILIA 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  ED+  +  IE
Sbjct: 318 TDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDEDVGMMREIE 377

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    +++ +  ++  L
Sbjct: 378 KFYSTQIEEMPANIGEL 394


>gi|324506146|gb|ADY42632.1| ATP-dependent RNA helicase DDX4 [Ascaris suum]
          Length = 548

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 119/432 (27%), Positives = 193/432 (44%), Gaps = 31/432 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F ++ L+P ++  +    Y +P P+Q     L+   HDV   A TG+GKTA+F+LP+  
Sbjct: 105 TFEEMRLAPSLMENLSRKKYERPLPVQQVAFSLISLGHDVIAHAPTGSGKTAAFLLPIIN 164

Query: 60  ----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
                   + G      P  +I+ PT+ELA Q+  + +      N  V L  GG+     
Sbjct: 165 SIVGQKTSQSGHLNKTHPYCMIISPTKELAEQLYRDADGLVDGTNCKVVLTFGGMSRSED 224

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR--MLDMGFIPYIQNITSL 173
            K +  G D++I + GR+ D      L +++++ +V DEAD+    ++GF   I+     
Sbjct: 225 IKNIHCGCDIVIGSVGRLCDFIVNKILKVDSLKFIVFDEADKLLESNLGFGDEIKRELLS 284

Query: 174 VPFTRQTLL---FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
              +   +    FSAT   +L+  ++  L+      +    +   +    +V    Q  K
Sbjct: 285 HIPSLVEMQKLLFSATDIAQLENFAKEVLRCSPTKLIVGGLNAVSSFVDQYVLKVHQGDK 344

Query: 231 KCALLQQLLQSQDTMKN------GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
              LL+ +      + N       IIF N K+    +   L  QGF    +HGN+    R
Sbjct: 345 HVLLLRLMRDQYGYLDNTTPKIKTIIFVNTKRRCSVVACFLSLQGFKAYPVHGNLTMALR 404

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPN--RAENYIHRIGRTGRAGRH 342
            K +         ++VA+D+ ARG+D+ DV HV N+DVPN     +Y+HR+GRTGR G  
Sbjct: 405 RKGVDALLNDECHILVATDVLARGMDLKDVSHVINYDVPNVESWASYVHRVGRTGRLGNR 464

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ------HNHARKN 396
           G+A T  + E    +  I        +WL  +  S+   LE+  IAQ      H  A + 
Sbjct: 465 GRATTFYSPETDSAMALIL------CEWLRMNKQSVPQFLEREAIAQAGMQEWHLKAIEK 518

Query: 397 NPIPQKSTGFDR 408
                K +  D 
Sbjct: 519 YESAMKESDRDE 530


>gi|303289893|ref|XP_003064234.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454550|gb|EEH51856.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 485

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 122/401 (30%), Positives = 186/401 (46%), Gaps = 32/401 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           + F       K++ A+L  GY  PTPIQ +  P+ +   DV  +A+TG+GKT +F+LP  
Sbjct: 37  VTFQRAPFPKKLIAALLKQGYASPTPIQAQAWPIAVTGRDVIAVAKTGSGKTCAFLLPAL 96

Query: 60  ------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
                          +  GR    +P  ++L PTRELA Q+ D   K+          L 
Sbjct: 97  SRIMKTGASAAPDMEMVDGRPAAVVPAAIVLAPTRELAIQIGDECAKFCPAAGAKTVTLY 156

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLM-----NNIEILVIDEADRMLDMG 162
           GG     Q + L  GAD+++ TPGR++D               N + +V+DEADRMLDMG
Sbjct: 157 GGASKGDQLRALRGGADMIVATPGRLIDFLAPPPGFSAPVSAKNAKYVVLDEADRMLDMG 216

Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ---NPKRIEVNTPSSTAETIEH 219
           F P I+ I  L P  RQTL+F+AT  + ++K++  F        RI       TA     
Sbjct: 217 FEPQIKKILKLCPDARQTLMFTATWPEAVKKIAAQFTSADAAHVRIGDGGERLTANKSIT 276

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
             V    +  K    ++ L       K GI+FC  K+    +   ++            I
Sbjct: 277 QTVEIIDEEDKLRRAIEVLKAELVDGKRGIVFCGTKRRCDFIDRKIKPATCEARGRFTGI 336

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
             +               L+VA+D+AARGLDIP V  V  +D P + E+Y+HRIGRTGRA
Sbjct: 337 RTKPS--------ARKAPLLVATDVAARGLDIPGVAVVLVYDFPLQTEDYVHRIGRTGRA 388

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLI---EKKVDWLNGDLSS 377
           G  GKA      ++      + +++   E+++  +  +++ 
Sbjct: 389 GLTGKAHCFFTSDNAHQAKELVQILQGAEQEIPEVLLEMAE 429


>gi|31077172|sp|P29562|IF4A1_RABIT RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
          Length = 398

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 201/378 (53%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 25  SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E     ++  + L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 85  QIEL---DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q 
Sbjct: 142 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L      
Sbjct: 202 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL--Y 259

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 260 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 319

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V +ED + +  I
Sbjct: 320 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 379

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      ++ +  +++ L
Sbjct: 380 ETFYNTSIEEMPLNVADL 397


>gi|304411815|ref|ZP_07393426.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307303417|ref|ZP_07583172.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304349675|gb|EFM14082.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306913777|gb|EFN44199.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 427

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 143/422 (33%), Positives = 215/422 (50%), Gaps = 24/422 (5%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI-- 62
            LG+   ++  + +  YV PTP+Q  TIP VL   DV   A TG+GKTA+F +P+L    
Sbjct: 13  QLGIIAPLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLV 72

Query: 63  -LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNKKL 119
             +         R L+L PTRELA QVAD+F  Y  + N    +    GG+   AQ + L
Sbjct: 73  EAKTDDKTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQSL 132

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GADVL+ TPGR+LD  +   + +N +  LV+DEADRML +GF   +  +   +P  +Q
Sbjct: 133 RAGADVLVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQ 192

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +E+++++   L  P   ++ +     E                   L   L
Sbjct: 193 TLLFSATFPEEVRELTAKLLNAPLEYQLQS-----EQESTIHQRVITVNRPMKTALLAHL 247

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      +IF + K    +L   L K+G S    HG+  Q +R ++L  FK G I ++
Sbjct: 248 IKEHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVL 307

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI  +  V NFD+P    +Y+HRIGR+GRAG  G A TL++ ED  H   
Sbjct: 308 IATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGV 367

Query: 360 IE-----KLIEKKV------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           IE     KL+ +++      D +  +L     P+ K +       +K   +P  +  F  
Sbjct: 368 IEKKNKLKLVREQIVGFEADDEMPAELLEQAKPVAKPE---GTGKKKRKQLPPANAEFWG 424

Query: 409 RK 410
           +K
Sbjct: 425 KK 426


>gi|189426069|ref|YP_001953246.1| ATP-dependent RNA helicase DbpA [Geobacter lovleyi SZ]
 gi|189422328|gb|ACD96726.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 465

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 145/404 (35%), Positives = 226/404 (55%), Gaps = 15/404 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P ++  +   GY   TPIQ  ++P +L   D+   A+TG+GKTA+F + +L+ 
Sbjct: 6   FSSLHLKPAMLKNLASLGYAAMTPIQAHSLPPILASKDLIARAKTGSGKTAAFGIGLLSR 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+    +++    L+L PTRELA QVA    +  +       L +  G+PF  Q   LE 
Sbjct: 66  LDTTALQLQ---ALVLCPTRELADQVAKELRRLARFTENIRVLTVCGGVPFGPQLGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR+LDH  RG L +++++ LV+DEADRMLDMGF   I+++ +  P  RQTL
Sbjct: 123 GAHVVVGTPGRLLDHLRRGSLDLSSLQTLVLDEADRMLDMGFQDDIRSLIAAAPARRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D +  +S    Q P  + V+         +H +     Q S+  A +      
Sbjct: 183 LFSATYPDSIADMSAAMQQTPVEVSVDEDHVAGTIEQHFYAVEPDQRSEAVARIL----G 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   ++ ++FCN K +   L   L+++GF+  AIHG+++QR R ++L  F   +  ++VA
Sbjct: 239 RYRPESTLVFCNTKLDCQELADDLKERGFAALAIHGDLEQRERDQVLVRFSNKSASVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI ++  V NF++    E + HRIGRTGRAG  G A +LV++ D + I  +E
Sbjct: 299 TDVAARGLDIKELAAVINFELSRNPEVHTHRIGRTGRAGEQGLAISLVSRRDSRLIKGME 358

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQH-----NHARKNNPIP 400
           + +  ++D    + SSL P   +   A       +  RKN   P
Sbjct: 359 EDLACRIDL--QEFSSLAPLTGRPPAAAMVTLCIDGGRKNKLRP 400


>gi|39977239|ref|XP_370007.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|145016045|gb|EDK00535.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 578

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 110/387 (28%), Positives = 190/387 (49%), Gaps = 13/387 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L LS   + A+ + G+ K T IQ + IP +L   DV G A+TG+GKT +F++P + +
Sbjct: 114 FSELNLSENTMKAIEEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAVEM 173

Query: 63  LEKGRARVRMPRTLILE-PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   + + R    +I+  PTRELA Q+        K+++ T  ++IGG    A+ +KL +
Sbjct: 174 LRSLKFKPRNGTGVIVVSPTRELALQIFGVARDLMKHHSQTYGIVIGGANRRAEAEKLSK 233

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G ++LI TPGR+LDH      +  N+  LVIDEADR+L++GF   ++ I  ++P  RQ++
Sbjct: 234 GVNLLIATPGRLLDHLQNTPFVFKNLRSLVIDEADRILEIGFEDEMRQIIKILPKERQSM 293

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T +++ ++   L+               T+E          + K  +L      
Sbjct: 294 LFSATQTTKVEDLARVSLRPGPLYLNVDEEKEYSTVEGLEQGYVVCEADKRFILLFSFLQ 353

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +   K  I+F +   +V      L      V  +HG   Q+ R      F       ++ 
Sbjct: 354 KMKKKKIIVFFSSCNSVKYYAELLNYIDCQVLDLHGKQKQQKRTNTFFEFCNADRGTLIC 413

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKHIDAI 360
           +D+AARGLD        +         YIHR+GRT R   + G++   +   ++  +  +
Sbjct: 414 TDVAARGLDFDPPDDPRD---------YIHRVGRTARGTNKKGRSLMFLLPSEVGFLTYL 464

Query: 361 E--KLIEKKVDWLNGDLSSLNPPLEKI 385
           +  ++   + D+    + ++   LEK+
Sbjct: 465 KQARVPVVEFDFPTKSIKNVQSQLEKL 491


>gi|311897562|dbj|BAJ29970.1| putative ATP-dependent RNA helicase [Kitasatospora setae KM-6054]
          Length = 765

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 136/361 (37%), Positives = 187/361 (51%), Gaps = 6/361 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   VV A+   G   P PIQ  TIP  L   DV G  +TG+GKT SF LP+L
Sbjct: 64  ITFGDLGLHDDVVRALAKRGVTTPFPIQAATIPDALAGKDVLGRGRTGSGKTLSFGLPLL 123

Query: 61  TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           T L  G R + + PR LIL PTRELA QVAD  E +G    L + ++ GG     Q   L
Sbjct: 124 TRLADGERTKAKHPRGLILVPTRELAMQVADALEPFGSVLGLRLKVVCGGTSMSNQIYAL 183

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG DVL+ TPGR+ D  NRG   M+ +EI V+DEAD+M DMGF+P +  I  LVP   Q
Sbjct: 184 ERGVDVLVATPGRLRDLINRGSAKMDEVEIAVLDEADQMADMGFLPEVTEILDLVPAGGQ 243

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT+ +E+  + + +          T            +  +    K         
Sbjct: 244 RLLFSATLENEIDTLVKRY-----LKNPVTHEVDPSAGAVTTMTHHILVVKPKDKAPITS 298

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIF   +     +   L + G    A+HG + Q +R ++L +FK+G + ++
Sbjct: 299 AIAARKGRTIIFVRTQMGADRVAQQLVESGVKADALHGGMTQGARTRVLGDFKDGYLNVV 358

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   TLV     + +  
Sbjct: 359 VATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVTLVLPHQRRGVFR 418

Query: 360 I 360
           +
Sbjct: 419 L 419


>gi|302552861|ref|ZP_07305203.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
           40736]
 gi|302470479|gb|EFL33572.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
           40736]
          Length = 490

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 124/387 (32%), Positives = 192/387 (49%), Gaps = 7/387 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADLGL  +++ A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 73  FADLGLPERLLTALGAEGVTTPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 132

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    + +   L +  ++GG+    Q K L  G
Sbjct: 133 TAGQRAESRQPLALVLVPTRELAQQVTDALTPFARALRLRLTTVVGGMSIGRQAKALHSG 192

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D  +RG   ++ + I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 193 AEVVVATPGRLKDLIDRGDCRLDRVAITVLDEADQMTDMGFMPQVTALLDQVAPGGQRML 252

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++   +L +P    V+             +  +  + +         Q  
Sbjct: 253 FSATLDRNVDRLVRAYLHDPVVHSVDP-----SAGAVTTMEHHLLHVEDDDKHATTTQIA 307

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F + K     L   L   G    A+HG   Q  R + L+ FK+G + ++VA+
Sbjct: 308 ARDGRVIMFLDTKHAADRLAKKLLAVGVRASALHGGKSQSQRTRTLARFKDGEVTVLVAT 367

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           ++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV     + +  +  
Sbjct: 368 NVAARGIHVDNLDLVVNVDPPGDHKDYLHRGGRTARAGESGTVVTLVLPHQRREMTRL-- 425

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
           + +  +      + S  P L +I  AQ
Sbjct: 426 MADAGITPQVTRVRSGEPELSRITGAQ 452


>gi|68073823|ref|XP_678826.1| helicase [Plasmodium berghei strain ANKA]
 gi|56499417|emb|CAI04881.1| helicase, putative [Plasmodium berghei]
          Length = 466

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 88/401 (21%), Positives = 157/401 (39%), Gaps = 29/401 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F D  L P+++ A+ ++G+  P+ +Q +TIP  +   D+   A++G GKTA FVL +   
Sbjct: 61  FKDFFLKPELLRAISESGFEHPSEVQQETIPAAITGTDILCQAKSGMGKTAVFVLSILQQ 120

Query: 60  --------------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY 99
                                     G     +    I            +         
Sbjct: 121 LETNDSKDIKEEKDMNNASGDMNQNSGSQNKYVRCLGIAHTRELAYQIKNEFDRFSKYLK 180

Query: 100 NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159
           N+   ++ GGI         +      I             +  M   +I      +   
Sbjct: 181 NVRCEVVYGGISMNKHVVLFKGNNIPHIIIGTPGRILALIREKYMLTDKIQHFVLDECDK 240

Query: 160 DMGFIPYI---QNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
            +  +      Q I    P  +Q + FSATM  E++ V + FLQNP  I ++  +     
Sbjct: 241 CLERLDMRGDVQKIFISTPLKKQVMFFSATMAKEMRDVCKKFLQNPVEIFIDDEAKLKLH 300

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
                     +  K   L++  +         IIF       + L   L +  F   +IH
Sbjct: 301 GLLQHYVKLQEKDKTRKLIE--ILDALEFNQVIIFVKSVTRAITLDKLLTECNFPSISIH 358

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G ++Q  R++    FK+   +++V++DL  RG+DI  +  V N+D+P  +++Y+HR+GR 
Sbjct: 359 GGLNQEERIERYDKFKKFENRILVSTDLFGRGIDIERINIVINYDMPENSDSYLHRVGRA 418

Query: 337 GRAGRHGKAFTLV-AKEDIKHIDAIEKLIEKKVDWLNGDLS 376
           GR G  G A T V ++ED   ++ ++   E  +  +   + 
Sbjct: 419 GRFGTKGLAITFVSSQEDTLALNEVQTRFEVAISEMPNKID 459


>gi|83317473|ref|XP_731176.1| DEAD/DEAH box helicase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23491131|gb|EAA22741.1| DEAD/DEAH box helicase, putative [Plasmodium yoelii yoelii]
          Length = 497

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 88/401 (21%), Positives = 157/401 (39%), Gaps = 29/401 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F D  L P+++ A+ ++G+  P+ +Q +TIP  +   D+   A++G GKTA FVL +   
Sbjct: 61  FKDFFLKPELLRAISESGFEHPSEVQQETIPAAITGTDILCQAKSGMGKTAVFVLSILQQ 120

Query: 60  --------------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY 99
                                     G     +    I            +         
Sbjct: 121 LETNDSKDIKEEKDMNNANGDMNQNSGSQNKYVRCLGIAHTRELAYQIKNEFDRFSKYLK 180

Query: 100 NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159
           N+   ++ GGI         +      I             +  M   +I      +   
Sbjct: 181 NVRCEVVYGGISMNKHVVLFKGNNIPHIIIGTPGRILALIREKYMLTDKIQHFVLDECDK 240

Query: 160 DMGFIPYI---QNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216
            +  +      Q I    P  +Q + FSATM  E++ V + FLQNP  I ++  +     
Sbjct: 241 CLERLDMRGDVQKIFISTPLKKQVMFFSATMAKEMRDVCKKFLQNPVEIFIDDEAKLKLH 300

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
                     +  K   L++  +         IIF       + L   L +  F   +IH
Sbjct: 301 GLLQHYVKLQEKDKTRKLIE--ILDALEFNQVIIFVKSVTRAITLDKLLTECNFPSISIH 358

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           G ++Q  R++    FK+   +++V++DL  RG+DI  +  V N+D+P  +++Y+HR+GR 
Sbjct: 359 GGLNQEERIERYDKFKKFENRILVSTDLFGRGIDIERINIVINYDMPENSDSYLHRVGRA 418

Query: 337 GRAGRHGKAFTLV-AKEDIKHIDAIEKLIEKKVDWLNGDLS 376
           GR G  G A T V ++ED   ++ ++   E  +  +   + 
Sbjct: 419 GRFGTKGLAITFVSSQEDTLALNEVQTRFEVAISEMPNKID 459


>gi|332637236|ref|ZP_08416099.1| ATP-dependent RNA helicase [Weissella cibaria KACC 11862]
          Length = 452

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 118/384 (30%), Positives = 190/384 (49%), Gaps = 12/384 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L P++  A+ +  +  PT +Q + IP+V+Q   V G +QTG+GKT +F++P+  
Sbjct: 3   KFTDYNLRPEIYTALDEIRFTTPTKVQERLIPVVMQGRSVVGQSQTGSGKTHTFLIPIFQ 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY----NLTVALLIGGIPFEAQNK 117
             +    +V+     I  P+RELA Q+    ++ G  +       + L +GG     Q  
Sbjct: 63  KFDPTAQKVQAV---ITTPSRELAQQIYAAAKQLGTGFPADQQPRIGLYVGGTDKVRQMH 119

Query: 118 K-LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           +       ++I TPGRI D +  G L ++    LV+DEAD  +D+GF+P +  I   +P 
Sbjct: 120 QLESTQPQIVIGTPGRIKDLYTAGGLDIHTASALVVDEADMTMDLGFLPEVDAIAGAMPE 179

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q L+FSAT+  +LQ   + +L NP   E+ T +  A TI +  V T            
Sbjct: 180 DLQMLVFSATIPQKLQPFLKKYLTNPVVEEIPTETVIAPTITNLLVGTKGMKKDDLVYEL 239

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             + +       ++F N K+    L  +L  +G  V  IHG I  R R + +   +    
Sbjct: 240 LTMGNPYM---ALVFTNTKERARELTKALRNRGLKVAEIHGGIQPRERKRTMQQIQHLDY 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VA+DLAARG+DIP V  + N  +P   E ++HR+GRTGR G  G A T+   ++ + 
Sbjct: 297 QYVVATDLAARGIDIPGVSLIINDGIPTELEFFVHRVGRTGRNGMEGTAITIYNPDEEER 356

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNP 380
           + A+E  +    + +      L P
Sbjct: 357 VQAVEN-MGVTFEPMTYSHGELKP 379


>gi|296230361|ref|XP_002760671.1| PREDICTED: probable ATP-dependent RNA helicase DDX59 isoform 1
           [Callithrix jacchus]
          Length = 620

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 115/404 (28%), Positives = 186/404 (46%), Gaps = 12/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF   G    +   +  +GY  PTPIQ++ IP+ L   D+   A TG+GKTA+F+LP+ 
Sbjct: 204 IDFEHCGFPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPV- 262

Query: 61  TILEKGRARVRMPRTLILEPTRE-LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +     + P  LIL PTRE          E       +   LL+GG+P   Q  +L
Sbjct: 263 --IMRALFERKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRL 320

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   V+I TPGR+LD   +  + +  I+I+V+DEAD ML MGF   + +I   +P   Q
Sbjct: 321 QQHVKVIIATPGRLLDIMKQSSVELCGIKIVVVDEADTMLKMGFQQQVLDILENIPNDCQ 380

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+L SAT+   +++++   L NP RI     +     +    +       KK        
Sbjct: 381 TILVSATIPTSIEQLASQLLHNPVRIITGEENLPCANVRQIILWVEDPAKKKKLFEILND 440

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +    +    +      +  G    +IH    Q  R  IL    EG  +++
Sbjct: 441 KKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDFEVV 500

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +  RGLD+  V  V NFD+P+  + Y+H++GR GR G++G A T +     +    
Sbjct: 501 VSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWD 560

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           I K ++     L   L  LN P        H+  RK     +++
Sbjct: 561 IAKRVKPTGSILPPQL--LNSP------YLHDQKRKEQQRDKQT 596


>gi|224036248|pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
 gi|224036250|pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
 gi|224036251|pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
 gi|224036253|pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
          Length = 388

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 201/378 (53%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 15  SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 74

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E     ++  + L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 75  QIEL---DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 131

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q 
Sbjct: 132 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 191

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L      
Sbjct: 192 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL--Y 249

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 250 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 309

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V +ED + +  I
Sbjct: 310 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 369

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      ++ +  +++ L
Sbjct: 370 ETFYNTSIEEMPLNVADL 387


>gi|157149988|ref|YP_001449893.1| ATP-dependent RNA helicase [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157074782|gb|ABV09465.1| ATP-dependent RNA helicase [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 447

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 197/452 (43%), Gaps = 43/452 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ T +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFTFKNYIQEALEDLKFVEATEVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL- 119
             L +    V++    I  P+RELA Q+     +     +  + +       +   +   
Sbjct: 61  QKLNEDEDHVQVV---ITAPSRELATQIYQATRQIASFSDKEIRVANYVGGTDKTRQIDK 117

Query: 120 --ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I S +P  
Sbjct: 118 LEFSQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIASSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  ++TI        +   +       
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVMEQIKTKTVISDTI---ENWLVSTKGRDKNAQIY 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 235 EISRILQPYLAMIFVNTKTRADELHSYLLAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWL--NGDLSSL---------NPPLEKIDI------------------- 387
             +EKL  K +  +  NG+                 EK+D                    
Sbjct: 355 RELEKLGIKFIPKMIKNGEFQDTYDRDRRANREKSYEKLDTEMIGLVKKKKKKIKPGYKK 414

Query: 388 ----AQHNHARKNNPIPQKSTGFDRRKKNYSS 415
               A +   RK      ++ G   RK    S
Sbjct: 415 KIQWAVNEKRRKTKRAENRARGRAERKAKRQS 446


>gi|302832666|ref|XP_002947897.1| hypothetical protein VOLCADRAFT_103677 [Volvox carteri f.
           nagariensis]
 gi|300266699|gb|EFJ50885.1| hypothetical protein VOLCADRAFT_103677 [Volvox carteri f.
           nagariensis]
          Length = 1338

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 128/413 (30%), Positives = 205/413 (49%), Gaps = 47/413 (11%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +G +P+V+ A+   GY  PTPIQ K +PL++Q  DV G+A+TG+GKTA+FVLPM+ 
Sbjct: 46  SFDTMGFAPEVLRAIKRKGYRLPTPIQRKAMPLIMQGLDVVGMARTGSGKTAAFVLPMIH 105

Query: 62  ILEKGRARVRMPRT---------------------------------------------L 76
                 ARV +                                                +
Sbjct: 106 RHVGNGARVAVSLHVPGSASCICACERVPKSTDADVHRHGWANEASELKQHSIKAGARAV 165

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR-ILD 135
           IL PTRELA Q      +  +  +L  A L+GG   E Q ++L    D+++ TPGR    
Sbjct: 166 ILAPTRELALQTHKTVRELARFTDLRTACLVGGDSMEVQFEELAANPDIIVATPGRLAHH 225

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
                 L + ++E  V DEADRM +MGFI  +  +   +   RQTLLFSATM   L + +
Sbjct: 226 LEEVEGLSLRSVEYCVCDEADRMFEMGFIIQVSELLRKMSPARQTLLFSATMPATLAEFA 285

Query: 196 ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255
           +  L  P+ + ++T    +  +   F  T     K  ALL  + +     +  I+F   +
Sbjct: 286 QAGLNAPQLVRLDTERRISPQLGLAF-FTCRMEDKVAALLHLVREVVPAKQLTILFTATR 344

Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
            +   L + L K+G     + G++DQ +R   ++ F+ G   L+V +D+AARG+DIP + 
Sbjct: 345 HHAEFLYNLLLKEGVDAACVFGSMDQTARKIHVAKFRGGRCHLLVTTDVAARGIDIPLID 404

Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           +V NFD P + E ++HR+GR  R GR G A++L+ ++++ ++  +   + + V
Sbjct: 405 NVINFDFPPKPELFVHRVGRAARMGRSGTAYSLLTRDELPYLLDLHLYLSRSV 457


>gi|297796361|ref|XP_002866065.1| hypothetical protein ARALYDRAFT_495573 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297311900|gb|EFH42324.1| hypothetical protein ARALYDRAFT_495573 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 741

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 122/372 (32%), Positives = 176/372 (47%), Gaps = 8/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L +S K    + DA YV  T +Q   IP  L   D+ G A+TG+GKT +FV+P+L 
Sbjct: 72  KFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILE 131

Query: 62  ILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L + R         +I+ PTRELAAQ      K GK +  +  LLIGG       K+  
Sbjct: 132 KLHRERWSPEDGVGCIIISPTRELAAQTFSVLNKVGKFHKFSAGLLIGGREGVDVEKERV 191

Query: 121 RGADVLICTPGRILDHFNRGKLLMN-NIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              ++L+C PGR+L H +        +++IL++DEADR+LD  F   +  I S +P  RQ
Sbjct: 192 NEMNILVCAPGRLLQHMDETPNFECSHLQILILDEADRVLDSAFKGQLDPIISQLPKHRQ 251

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT T +++ ++   L++P+ I V+  + TA               KK   +    
Sbjct: 252 TLLFSATQTKKVKDLARLSLRDPEYISVHEEAPTATPASLMQTVMIVPVEKKL-DMLWSF 310

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQ 297
                    ++F + KK V  +  +  K    +   ++HG + Q  RM + S F E    
Sbjct: 311 IKTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGVYSQFIERQSV 370

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L     LA        V  V   D P    +YIHR+GRT R    GK+   +   + K  
Sbjct: 371 LFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFLTPSEEKM- 429

Query: 358 DAIEKLIEKKVD 369
             IEKL E KV 
Sbjct: 430 --IEKLQEAKVP 439


>gi|159040018|ref|YP_001539271.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           arenicola CNS-205]
 gi|157918853|gb|ABW00281.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
           CNS-205]
          Length = 469

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 140/455 (30%), Positives = 221/455 (48%), Gaps = 16/455 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DFA LGL   +V A+   G   P  IQ  T+P  L   DV G  QTG+GKT +F LP+L
Sbjct: 17  VDFAALGLPQPLVRALARQGITAPFEIQRATMPDALAGRDVLGRGQTGSGKTLAFGLPLL 76

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G   R R PR L+L PTRELA QV+D     G+   + +   +GG+P++ Q   L
Sbjct: 77  ARLADGERARPRHPRALVLVPTRELAMQVSDALFPLGRTIGVFLRTAVGGVPYDRQISAL 136

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +VL+ TPGR+ D   RG   +++IE+ V+DEAD+M DMGF+P +  + +  P   Q
Sbjct: 137 RRGVEVLVATPGRLADLIERGVCRLDDIEVTVLDEADQMADMGFLPEVTELLAKTPADAQ 196

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT+  ++  +   F+ +P       P++   T++H  +               + 
Sbjct: 197 RLLFSATLDGDVDALVRRFMTDPVTHSTAPPTAAVTTMDHHLLLIPPHDK-----FSVVA 251

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++F   +  V  L   L   G     +HG   QR R + L+ F+EG + ++
Sbjct: 252 SIAAREGRTMVFARTQLGVDRLVQQLAAVGVRAGGLHGGKTQRMRTRTLAEFREGRMNVL 311

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK-HID 358
           VA+D+AARG+ +  V  V + D P   ++Y+HR GRT RAG  G   TL   +  +  + 
Sbjct: 312 VATDVAARGIHVDGVSLVLHVDPPKDPKDYLHRAGRTARAGEAGAVATLALPKQRRGTLA 371

Query: 359 AIEKL----IEKKVDWLNGDLSSLNPPLEK--IDIAQHNHARKNNPIPQKSTGF---DRR 409
            +EK      + +V   +  L+ L    E   + +      R++   P  +  F    RR
Sbjct: 372 MLEKAGVAPAQTRVRAGDPALAELIGAREPSGVPVRDEPEPRRHTSRPDGARRFPDRHRR 431

Query: 410 KKNYSSQKSHIPLKESEKISKLQQDIQENDADSLG 444
            ++  S +   P + ++  S+ +   +     S  
Sbjct: 432 GEHGRSGERRHPGRPADGRSERRSGDRRFSGRSSA 466


>gi|157960731|ref|YP_001500765.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157845731|gb|ABV86230.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 429

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 126/433 (29%), Positives = 215/433 (49%), Gaps = 17/433 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+DL L  +++  +     V  T IQ   IP +L   D+  +AQTG+GKT +F LP+L
Sbjct: 10  MKFSDLNLCAEILSKLPSKLIVA-TDIQRLAIPQILAGKDLLALAQTGSGKTYAFGLPLL 68

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL---TVALLIGGIPFEAQNK 117
                G +     + L+L PTRELA QV +  E    +  +      +         Q  
Sbjct: 69  QSNINGNSDSGEVKALVLVPTRELALQVGEALESVSDSTGIIVLCGGVDKEEQVKTLQQA 128

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L+    +++ TPGR+LD     +L + +++ LV+DEADR+++MGF P ++ I   +P  
Sbjct: 129 RLQLKPQLVVATPGRLLDLLREQQLSLESVKQLVLDEADRLMEMGFWPDLERILEFIPSK 188

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT+  EL + +   L+ P ++E +  +S    I             +  +   
Sbjct: 189 RQTMLFSATLAPELNEKALGLLRAPVKVEAHAANSVVTDISESLYLVNKGDKARALIAL- 247

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++     ++F N K +   L   L K G +  A+HG+ +Q  R + L++FK   + 
Sbjct: 248 --IQKNQWSQVLVFINAKDDADKLAKRLVKAGINAAALHGDKEQLDRQQTLADFKALKLP 305

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++V +DL +RG+ +  +  V N D+PN A  Y+HRIGRT RAG  G A +LV   +   +
Sbjct: 306 VLVTTDLLSRGIHVDALPVVINLDLPNSAPVYVHRIGRTARAGDKGLAISLVCHGEADSL 365

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
            AI++L E+++             LE  ++     +  +   P+     +RR ++  S K
Sbjct: 366 KAIQQLTERELKL---------EALEGFEVTDKPSSGDSKRAPRDKKA-NRRSQSKRSAK 415

Query: 418 SHIPLKESEKISK 430
              P + ++K  +
Sbjct: 416 DFAPKQAAKKPRR 428


>gi|73966207|ref|XP_536623.2| PREDICTED: similar to eukaryotic translation initiation factor 4A,
           isoform 1 isoform 1 [Canis familiaris]
 gi|50814|emb|CAA26842.1| unnamed protein product [Mus musculus]
 gi|50819|emb|CAA26845.1| unnamed protein product [Mus musculus]
          Length = 390

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 201/378 (53%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 17  SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 76

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E     ++  + L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 77  QIEL---DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 133

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q 
Sbjct: 134 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 193

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L      
Sbjct: 194 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL--Y 251

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 252 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 311

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V +ED + +  I
Sbjct: 312 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 371

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      ++ +  +++ L
Sbjct: 372 ETFYNTSIEEMPLNVADL 389


>gi|167035990|ref|YP_001671221.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida GB-1]
 gi|166862478|gb|ABZ00886.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 461

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 206/369 (55%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L LS  ++  +   GY   TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 8   FATLPLSTAMLANLDALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNP 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     R    + L+L PTRELA QVA    +  +  +    L +  G+    Q   LE 
Sbjct: 68  I---NPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEH 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H ++G L+++ +  LV+DEADRMLDMGF   I +I    P  RQTL
Sbjct: 125 GAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPARRQTL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++ +F++NP++++V +  +  +  +           +    +      
Sbjct: 185 LFSATYPAGIKQLAADFMRNPQQVKVESLHTDNQIEQRFIEIDPQHRLEAVTRVL----G 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ + FC  K+   ++   L  +G    A+HG+++QR R ++L+ F   +  ++VA
Sbjct: 241 HYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   AE ++HR+GRTGRAG  G A +LVA  +     AIE
Sbjct: 301 TDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGIAVSLVAPAEGHRAQAIE 360

Query: 362 KLIEKKVDW 370
            L +  + W
Sbjct: 361 DLQKSPLRW 369


>gi|325000518|ref|ZP_08121630.1| DEAD/DEAH box helicase domain protein [Pseudonocardia sp. P1]
          Length = 547

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 142/417 (34%), Positives = 221/417 (52%), Gaps = 26/417 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+ P++V A+ +   V+   IQ  T+PL L   DV G A+TGTGKT  F +PML 
Sbjct: 64  TFAELGVRPEIVSALAENDIVRTFAIQELTLPLALDGEDVIGQARTGTGKTLGFGVPMLQ 123

Query: 62  ILEKGRARV-------------RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108
            +     +               +P+ L++ PTREL  QVA +    GKN  + V  + G
Sbjct: 124 RITPPGEQPAATAEGEAADRTKDVPQALVVVPTRELCVQVARDIAAAGKNLGVRVVAIYG 183

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G  +E Q + L +G DV++ TPGR+LD   +  L++  ++ LV+DEAD MLD+GF+P ++
Sbjct: 184 GRAYEPQLEALRKGVDVIVGTPGRLLDLAEQRHLVLGRVKALVLDEADEMLDLGFLPDVE 243

Query: 169 NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
            I  ++P  R T+LFSATM   + ++S  FL  P  I        +       +   A  
Sbjct: 244 RILRMLPEQRHTMLFSATMPGPIVQLSRAFLTRPTHIRAEEADQGSIHERTKQLVYRAHA 303

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
             K  L+ ++LQ++D   + I     K+    +   L ++GF+  A+HG++ Q +R + L
Sbjct: 304 MDKVELVTRVLQAKDRGLSMIFT-RTKRTAQRVADDLAERGFAAAAVHGDLGQGAREQAL 362

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             F+   + ++VA+D+AARG+D+  V HV N+  P  ++ Y+HRIGRTGRAGR G A TL
Sbjct: 363 RAFRAEKVDVLVATDVAARGIDVTGVTHVVNYQCPEDSKTYVHRIGRTGRAGREGVAVTL 422

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           V  ++I     I + +             +  P+E    + H     +  IP  STG
Sbjct: 423 VDWDEIPRWKLISEDLNL----------GMPEPVETYSTSDHLFT--DLDIPTDSTG 467


>gi|217073428|gb|ACJ85073.1| unknown [Medicago truncatula]
          Length = 369

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 117/354 (33%), Positives = 178/354 (50%), Gaps = 25/354 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   ++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F   +L 
Sbjct: 41  TFDAMGLLENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+ G   +   + L+L PTRELA Q+       G    + V                  
Sbjct: 101 QLDYG---LVQCQALVLAPTRELAQQMEKVMRALGDYLGVKV------------------ 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+ D   R  L  + I++ V+DEAD ML  GF   I +I  L+P   Q  
Sbjct: 140 --HVVVGTPGRVFDMLRRQSLRSDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 197

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM  E  +++  F+  P RI V     T E I+  +V    +  K   L       
Sbjct: 198 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL--YE 255

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              +   +IF N ++ V  L   +  +  +V A HG++DQ +R  I+  F+ G+ ++++ 
Sbjct: 256 TLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 315

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           +DL ARG+D+  V  V N+D+P + ENY+HRIGR+GR GR G A   V  ED +
Sbjct: 316 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLEDAR 369


>gi|50547049|ref|XP_500994.1| YALI0B16896p [Yarrowia lipolytica]
 gi|74660102|sp|Q6CEB8|DRS1_YARLI RecName: Full=ATP-dependent RNA helicase DRS1
 gi|49646860|emb|CAG83247.1| YALI0B16896p [Yarrowia lipolytica]
          Length = 753

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 153/460 (33%), Positives = 242/460 (52%), Gaps = 20/460 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L LS  V+  +   GY  PTPIQ +TIP+ L   D+   A TG+GKTA++++P+L 
Sbjct: 253 TFQTLNLSRPVMKGISALGYQAPTPIQSRTIPIALMGKDLVAGAVTGSGKTAAYIIPVLE 312

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120
            L    ++V   + ++L PTREL+ QVAD  +K  +    +   L +GG+    Q ++L+
Sbjct: 313 RLLYKSSKVAATKVVVLTPTRELSIQVADVGKKLAQYVSGVRFGLAVGGLNLRVQEQELK 372

Query: 121 RGADVLICTPGRILDHFNR-GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              +V+I TPGR +DH        ++++EILVIDEADRML+ GF   +  I +L+P  RQ
Sbjct: 373 TRPEVVIATPGRFIDHVRNSPSFNVDDVEILVIDEADRMLEEGFQQELTEILTLLPKKRQ 432

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM   +  + +  L  P R+ +N P   A  +   FV    +   K ALL  +L
Sbjct: 433 TLLFSATMNSSISSLIQLSLSRPVRVMINPPKQAASGLVQEFVRIRKRDHLKPALLASIL 492

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +  D  +  IIF  +K+    L   L   G  +  +HG + Q  R++ ++ FK+  + ++
Sbjct: 493 KKMDKEQRTIIFVARKETAHRLRIMLGLLGVRIGELHGALSQEQRLQSITAFKKLEVPIL 552

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK--EDIKHI 357
           V +DLA+RGLDIP +  V N+D+P     Y+HR+GRT RAGR G++ TLV +   D   +
Sbjct: 553 VCTDLASRGLDIPKIECVVNYDMPQTHAVYLHRVGRTARAGREGRSITLVGEAAADRAIV 612

Query: 358 D-AIE--------KLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
             AI+        K + + VDW   ++  L +   EK DI     A +           +
Sbjct: 613 REAIKSVSESKQGKAVGRNVDW--PEVEKLYSKIEEKGDIVNEILAEEKEEKAMLQAEME 670

Query: 408 RRKK----NYSSQKSHIPLKESEKISKLQQDIQENDADSL 443
            RK      Y  + +  P +   + ++ ++  + +D  +L
Sbjct: 671 VRKGENLLKYEKEIASRPRRTWFQNAQEKKADETSDKRNL 710


>gi|307331285|ref|ZP_07610408.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306883097|gb|EFN14160.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 565

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 145/450 (32%), Positives = 226/450 (50%), Gaps = 12/450 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL  ++V  +   G   P PIQ  TIP  +   D+ G  +TG+GKT SF LP+L
Sbjct: 63  ITFADLGLPEQIVRKLAQNGVTTPFPIQAATIPDAMAGKDILGRGRTGSGKTLSFGLPLL 122

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T L  G    + PR LIL PTRELA QV+D  + YG    L + ++ GG     Q   LE
Sbjct: 123 TTLAGGHTEKKRPRGLILTPTRELAMQVSDALQPYGDILGLKLKVVCGGTSMGNQIYALE 182

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+ D  +RG   ++ +++ V+DEAD+M DMGF+P +  I  LVP   Q 
Sbjct: 183 RGVDILVATPGRLRDIIDRGAATLDKVQVAVLDEADQMADMGFLPEVTEILDLVPQGGQR 242

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ +E+  + + +L +P   EV++      T+ H  +       K          
Sbjct: 243 LLFSATLENEIDSLVKRYLVDPVTHEVDSAQGAVTTMTHHVLVV-----KPKDKAPVTAA 297

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   +     +   L   G    A+HG + Q +R + L++FK+G + ++V
Sbjct: 298 IAARKGRTIIFVRTQLGCDRVAEQLCDAGVRADALHGGMTQGARTRTLADFKDGYVNVLV 357

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ +  +  V N D     ++Y+HR GRT RAG+ G   +L      +    I
Sbjct: 358 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGQSGTVVSLALPHQRRQ---I 414

Query: 361 EKLIEKK-VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
            +L+E   VD     +       E  D+AQ   AR    +  ++     ++    +Q   
Sbjct: 415 FRLMEDAGVDASRHIVGGGGAFDE--DVAQITGARSLTEVQAEAASNAAKQAEREAQDLS 472

Query: 420 IPLKESEKIS-KLQQDIQENDADSLGFRGN 448
             L+  ++ + +L+++     A +   RG 
Sbjct: 473 RELERVQRRAVELREEADRLSARAARERGE 502


>gi|270293066|ref|ZP_06199277.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           M143]
 gi|270279045|gb|EFA24891.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           M143]
          Length = 447

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 117/377 (31%), Positives = 183/377 (48%), Gaps = 9/377 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIEKALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL- 119
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +   +   
Sbjct: 61  QQLDETSDSVQAV---ITAPSRELATQIYQAARQIVAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 120 --ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LAISQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP    + T +  ++TI++  ++T  +          
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMERIKTKTVISDTIDNWLISTKGRDKNAQIYEL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 237 --TQVMQPYLAMIFVNTKTRADELHAYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWLNGD 374
             +EKL  K +  +  D
Sbjct: 355 RELEKLGIKFIPKMVKD 371


>gi|241889864|ref|ZP_04777162.1| putative ATP-dependent RNA helicase YqfR [Gemella haemolysans ATCC
           10379]
 gi|241863486|gb|EER67870.1| putative ATP-dependent RNA helicase YqfR [Gemella haemolysans ATCC
           10379]
          Length = 443

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 112/396 (28%), Positives = 194/396 (48%), Gaps = 14/396 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F     +  V  AV+D G+  PT IQ +    VL+  ++   +QTG+GK+ SF+LP+ +
Sbjct: 5   SFEQYKFNEFVNKAVVDLGFDNPTKIQERVFSPVLKGKNIVAKSQTGSGKSHSFLLPIFS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKKL 119
            L+  + + +     IL PTREL+ Q+ D           ++ + L IGG       +++
Sbjct: 65  KLDVTKKKTQSI---ILAPTRELSRQLYDMALHIASFSEEDIKITLCIGGQDLNRDIERV 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++I TP R+L+      L +  +E LVIDE D M+D+GF+  +  I+       Q
Sbjct: 122 SNAPHIIIGTPTRVLELDKSSALAIKEVESLVIDECDMMIDLGFMEDVDKISKRAAENCQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+  ++    + +L+N + IEV+               + ++  K        +
Sbjct: 182 FLVFSATIPTQMNHFLKKYLKNAQHIEVDNAKFGKIEYILIPEKSSSRLEK-----LHEI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       +IF N+K  V  +   L  +G +V  +HG++  R R ++           +
Sbjct: 237 TTVINPYLALIFANKKTEVEEVSSYLISKGLNVGVLHGDLTPRERKQMQRRINNLDFTYV 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASDL +RG+DI  V HV NF++PN  + +IHR GRTGRAG  G   T+   +D + +  
Sbjct: 297 VASDLMSRGIDIEGVSHVINFNIPNDLDFFIHRAGRTGRAGLSGDCITIYNNKDEEKLQD 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           +EK   + +++ + D+ +    +E  D  +    +K
Sbjct: 357 LEK---RGIEFNHQDIRN-GEFVEAKDRNKRQSRKK 388


>gi|162451888|ref|YP_001614255.1| hypothetical protein sce3615 [Sorangium cellulosum 'So ce 56']
 gi|161162470|emb|CAN93775.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 812

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 147/465 (31%), Positives = 236/465 (50%), Gaps = 11/465 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L LS ++   + + GYV PTP+Q+     V +  D    A+TGTGKTA+F LP++ 
Sbjct: 29  TFDVLPLSSELRETLAEIGYVHPTPVQLAVWEPVTRGRDAVVQARTGTGKTAAFGLPIVD 88

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                +  +   + L L PTRELA QV+   E+ GK   + V  + GG P + Q   L  
Sbjct: 89  HAV--KRSLAQAQVLALCPTRELALQVSAEVERLGKRKGIKVVAVYGGAPMQRQIDALAA 146

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA V++ TPGR+LDH  RG ++  +I +LV+DE D ML MGF   +  I + +P  RQTL
Sbjct: 147 GAQVIVGTPGRVLDHLRRGTIVAKHIRLLVLDECDEMLSMGFERELTAILAELPPERQTL 206

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++++++ + L++P+ I ++  +  A  I+H               + +    
Sbjct: 207 LFSATLPPDIERIARSKLRSPEFITLSGDAVGALQIQHYVYLITGDKLTSLVRIIE---- 262

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            +  +N +IFCN K     +  +L++QG+    ++G++ Q  R K++S  +EG ++ +VA
Sbjct: 263 VENPENAVIFCNTKDETEAVAGALKRQGYDADWLNGDLPQSDREKVMSATREGRLRFLVA 322

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+DI  + HV N+D P  AE Y+HR GRTGRAGR G A  L+  +D+  +  I 
Sbjct: 323 TDVAARGIDISHLTHVINYDFPQDAEAYVHRTGRTGRAGRTGTAIALITPQDVGPL-YIL 381

Query: 362 KLIEKKVDWLNGDLSS---LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           +L   K+  L   L S   L    E   +A    A  +    +      RR   +   ++
Sbjct: 382 RLT-YKIRPLEKQLPSEGELKTRAEADLVAMLAEAFLSKGTHRDDLSLARRLLTHDQAEA 440

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
            +     + +       +E  A     +    A    + RG    
Sbjct: 441 IVAGLLRDHLGARPTAQEEASAARRAQQPQRAAARESEGRGTDPS 485


>gi|148667738|gb|EDL00155.1| mCG1035528 [Mus musculus]
          Length = 406

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 201/378 (53%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 33  SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E     ++  + L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 93  QIEL---DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 149

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I+I V+DEAD ML  GF   I +I   +    Q 
Sbjct: 150 EAPHIIVGTPGRVFDMLNRRYLSPKYIKIFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 209

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L      
Sbjct: 210 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL--Y 267

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 268 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 327

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V +ED + +  I
Sbjct: 328 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 387

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      ++ +  +++ L
Sbjct: 388 ETFYNTSIEEMPLNVADL 405


>gi|168000743|ref|XP_001753075.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695774|gb|EDQ82116.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 793

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 115/373 (30%), Positives = 187/373 (50%), Gaps = 6/373 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LG+   V  A+   G  +  PIQ   +   +Q  D+ G A+TGTGKT +F +P++  + +
Sbjct: 142 LGIPDAVADALAKRGITQLFPIQRAVLEPAMQGRDLIGRAKTGTGKTLAFGIPIINNIIR 201

Query: 66  GRARVRMPRTLILEPT-----RELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                R+ R     P                 E       L+   + GG+   +Q + L 
Sbjct: 202 ENEENRVARRSGRAPRALVLAPTRELAKQVEREFMESAPMLSTICVYGGVAISSQQRLLT 261

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+ + TPGRI+D  NRG L +  +  LV+DEAD+ML +GF   ++ I   +P  RQ+
Sbjct: 262 RGVDIAVGTPGRIIDLINRGSLRLQEVRFLVLDEADQMLAVGFEEDVEQILEQMPNQRQS 321

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++K+S  +L +   I++   S           A       K ++L  L+ 
Sbjct: 322 MLFSATMPTWVKKLSRKYLHDALTIDLVGESDEKLADRIKLYAVATVPQAKRSILNDLIA 381

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K++  +   +   +     A+HG+I Q  R K L+ F+EG   ++V
Sbjct: 382 VYGKGGKTIVFTQTKRDADD-VATAMARTLGCEALHGDISQSQREKTLNAFREGNFSVLV 440

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP+V  V ++++PN  E ++HR GRTGRAG+ G A  + +    + +  I
Sbjct: 441 ATDVAARGLDIPNVDLVIHYEIPNDPETFVHRSGRTGRAGKDGTAILMYSDRQTRTMRLI 500

Query: 361 EKLIEKKVDWLNG 373
           E+ +  K   ++ 
Sbjct: 501 ERDVGCKFTKISA 513


>gi|126275853|ref|XP_001386913.1| predicted protein [Scheffersomyces stipitis CBS 6054]
 gi|146325686|sp|A3GHW9|ROK1_PICST RecName: Full=ATP-dependent RNA helicase ROK1
 gi|126212782|gb|EAZ62890.1| predicted protein [Pichia stipitis CBS 6054]
          Length = 558

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 97/374 (25%), Positives = 179/374 (47%), Gaps = 10/374 (2%)

Query: 2   DFADL----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
            F D+     L  K++  +L+A +V+PT IQ +++P+ L   D+   A TG+GKT +F++
Sbjct: 117 SFQDMIGRFRLDSKLLSNLLEAEFVEPTAIQCESLPISLSGRDLIACAPTGSGKTLAFLI 176

Query: 58  PMLT---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG--IPF 112
           P++    +  KGR +      L++ PT ELA Q+    +   +   L VA+L        
Sbjct: 177 PLIQSLLVSSKGRPKNYGITGLVISPTNELAIQIFQELQILTRGKKLNVAILSKQLANKL 236

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
                K  +   ++      I    N    L    ++++ +                ++ 
Sbjct: 237 NNDIVKASKYDIIVSTPLRLIDIVKNEKVDLSKVEQLVIDEADKLFDQGFVEQTDDILSH 296

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                 +  +FSAT+   +++++ + +++P R+ +    + + TI+   V T ++  K  
Sbjct: 297 CTYTKIRKSMFSATIPSGVEEMAHSIMRDPIRVIIGRKEAASNTIDQKLVFTGSEEGKLL 356

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
           A+ +Q++Q  +     IIF         L H L     +V  IH     + R +++  FK
Sbjct: 357 AI-RQMIQEGEFKPPIIIFLQSIHRAKALFHELLYDKLNVDVIHAERTPKQREEVIKRFK 415

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G I +++ +D+ ARG+D   V  V N+DVP  A+ Y+HRIGRTGR G+ G+A T   KE
Sbjct: 416 NGDIWVLITTDVLARGVDFKGVNMVINYDVPQTAQAYVHRIGRTGRGGKAGRAVTFFTKE 475

Query: 353 DIKHIDAIEKLIEK 366
           D + +  I  ++++
Sbjct: 476 DDQAVKPIINVMKQ 489


>gi|95132450|gb|AAI16543.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Danio rerio]
 gi|182891866|gb|AAI65407.1| Ddx56 protein [Danio rerio]
          Length = 557

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 113/496 (22%), Positives = 211/496 (42%), Gaps = 44/496 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++GL  +++ A+ D G+ +PT IQ K IPLVL+  D+   A+TG+GKTA++ +P++  
Sbjct: 8   FHEMGLDDRLLKALADLGWSQPTLIQEKAIPLVLEGKDLLARARTGSGKTAAYAVPLIQR 67

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEK--YGKNYNLTVALLIGGIPFEAQNKK 118
               K   R +  R ++L PT+EL  QV     +     + ++ VA + G     AQ   
Sbjct: 68  VLTSKQTVREQAVRAVVLVPTKELGQQVQTMIRQLTVYCSRDVRVADISGKADLSAQKPI 127

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L    D+++ TP RI  H N     L +++E+LVIDEAD +   GF   ++N+   +P  
Sbjct: 128 LMEKPDIVVSTPSRIQAHINAQNLQLHSSLEMLVIDEADLLFSFGFEADLKNLLCHLPKI 187

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q  L SAT+ D++Q + E  L NP  +++        +    F     +  K   +   
Sbjct: 188 YQAFLMSATLNDDVQALKELVLHNPVTLKLQGSQLPDSSQLQQFSIKCEEEDKFLLIYTM 247

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L       K  +   +  ++        +    +               I    +     
Sbjct: 248 LKLGLIQGKTLLFVSDVDRSYRLKLFLEQFSIPACVLNSELPVHSRCHIISQFNQGFYNY 307

Query: 298 LMVASDL--------------------------------AARGLDIPDVGHVFNFDVPNR 325
           ++ + +                                  +RG+D  +V +V NFD P  
Sbjct: 308 IIASDEQGLESPAGSSQKTQEKGNKKKGTGKKGKDKEYGVSRGIDFHNVSNVINFDFPTS 367

Query: 326 AENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
            E+YIHR+GRT RA   G A + ++  ++  +  +E  +    D  N  L      +E+I
Sbjct: 368 VESYIHRVGRTARADNPGTALSFISHAELSMLSEVENAL--TGDSNNCVLKPYEFRMEEI 425

Query: 386 DIAQHNHARKNNPIPQKSTGFDR----RKKNYSSQKSHIPLKESEK-ISKLQQDIQENDA 440
           +  ++        + +++    R    +++  +S+K     +++ + +  L+ D   + A
Sbjct: 426 EGFRYRCRDGMRSVTKQAVKEARLKEIKQELLNSEKLKTYFEDNPRDLQLLRHDKDLHPA 485

Query: 441 DSLGFRGNMPAFMLPK 456
                  N+P +++P 
Sbjct: 486 IIKPHMKNVPEYLIPT 501


>gi|255079320|ref|XP_002503240.1| predicted protein [Micromonas sp. RCC299]
 gi|226518506|gb|ACO64498.1| predicted protein [Micromonas sp. RCC299]
          Length = 770

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 104/362 (28%), Positives = 171/362 (47%), Gaps = 3/362 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F D+ LS      + DA + + T IQ  TIP  L   D+ G A+TG+GKT +F++P + 
Sbjct: 84  KFKDMPLSEATQRGLADARFKELTAIQRATIPHALAGRDILGAAKTGSGKTLAFIVPTLE 143

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +      R      LI+ PTRELA Q+       GK+++L+  LLIGG   + +   + 
Sbjct: 144 ALYRAKWGRQDGIGGLIIAPTRELATQIFQQLVAAGKHHSLSAGLLIGGKNVKEEKDTVN 203

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +            ++++LV+DEADR+LD+GF   +  I   +P   + 
Sbjct: 204 RMNLLVCTPGRLLQHMDETPMFDCVSLKVLVLDEADRILDLGFRETLTAILENLPKKGRQ 263

Query: 181 L-LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSAT T  ++ ++   +++P+ + V+  S+ A   +   +    +  KK   +   +
Sbjct: 264 TLLFSATQTKSVKDLARLSMRDPEYLAVHAESAHATPPKLSQMVATCELDKKMETMWAFI 323

Query: 240 QSQDTMKNGIIFCNQKK-NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +S  T K  +   + K+   V+      + G  V  +HG + Q  RM     F +    +
Sbjct: 324 KSHLTSKTLVFLSSCKQVRFVHEMFRRMRPGIPVAMLHGRMKQMKRMATFDAFCKAKHTV 383

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+AARGLD P V  V   D P     YIHR+GRT R    GK   L+   +     
Sbjct: 384 LFATDVAARGLDFPSVDWVLQADCPEDVPCYIHRVGRTARYTAEGKGLLLLTPSESAFAK 443

Query: 359 AI 360
            +
Sbjct: 444 EL 445


>gi|15240418|ref|NP_200302.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|75333773|sp|Q9FFT9|RH32_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 32
 gi|9758271|dbj|BAB08770.1| RNA helicase-like protein [Arabidopsis thaliana]
 gi|332009172|gb|AED96555.1| DEAD-box ATP-dependent RNA helicase 32 [Arabidopsis thaliana]
          Length = 739

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 122/372 (32%), Positives = 174/372 (46%), Gaps = 8/372 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L +S K    + DA YV  T +Q   IP  L   D+ G A+TG+GKT +FV+P+L 
Sbjct: 72  KFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILE 131

Query: 62  ILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L + R         +I+ PTRELAAQ      K GK +  +  LLIGG       K+  
Sbjct: 132 KLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERV 191

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNI-EILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              ++L+C PGR+L H +          +IL++DEADR+LD  F   +  I S +P  RQ
Sbjct: 192 HEMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHRQ 251

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT T +++ ++   L++P+ I V+  + TA               KK   +    
Sbjct: 252 TLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKL-DMLWSF 310

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQ 297
                    ++F + KK V  +  +  K    +   ++HG + Q  RM + S F E    
Sbjct: 311 IKTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGVYSQFIERQSV 370

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           L     LA        V  V   D P    +YIHR+GRT R    GK+   +   + K  
Sbjct: 371 LFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFLTPSEEKM- 429

Query: 358 DAIEKLIEKKVD 369
             IEKL E KV 
Sbjct: 430 --IEKLQEAKVP 439


>gi|163939929|ref|YP_001644813.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|229011434|ref|ZP_04168624.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus mycoides DSM
           2048]
 gi|229059822|ref|ZP_04197198.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH603]
 gi|229132964|ref|ZP_04261806.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-ST196]
 gi|229167008|ref|ZP_04294754.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH621]
 gi|163862126|gb|ABY43185.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
 gi|228616468|gb|EEK73547.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH621]
 gi|228650461|gb|EEL06454.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-ST196]
 gi|228719492|gb|EEL71094.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH603]
 gi|228749832|gb|EEL99667.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus mycoides DSM
           2048]
          Length = 389

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 97/348 (27%), Positives = 178/348 (51%), Gaps = 8/348 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P +  A   AG+ + T IQ + IP +L+  DV   + TGTGKT +++LP+L  +      
Sbjct: 7   PFLQQAWEKAGFKEFTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI---NPE 63

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           V+ P+ +IL PTREL  Q+ +  +K+    +++ A LIGG   + Q +KL++   V++ +
Sbjct: 64  VKQPQVVILAPTRELVMQIHEEVQKFTAGTDISGASLIGGADIKRQVEKLKKHPRVIVGS 123

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGRIL+     KL M+ ++ +V DE D+++    +  + ++       RQ +  SAT+T 
Sbjct: 124 PGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVLDVIKSTMRDRQLVFCSATITK 183

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
             +  + +    P+ + V          +     TY    ++                 +
Sbjct: 184 AAEDAARDLTVEPQLVRVTR-----SEAQSLVEHTYIVCERREKNDYIRRVMHMGNVKAV 238

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
            F N    +  +   L+ +     A+H    ++ R   +  F+ G +++++A+D+AARGL
Sbjct: 239 AFLNDPFRLDEITQKLKFRKMKAAALHAEASKQEREVTMRAFRSGKLEILLATDIAARGL 298

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           DI D+ HV + ++P+  + YIHR GRTGR G+ G   +LV +++ + +
Sbjct: 299 DIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERKL 346


>gi|292488330|ref|YP_003531212.1| ATP-dependent RNA helicase dbpA [Erwinia amylovora CFBP1430]
 gi|292899529|ref|YP_003538898.1| ATP-independent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291199377|emb|CBJ46494.1| ATP-independent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291553759|emb|CBA20804.1| ATP-dependent RNA helicase dbpA [Erwinia amylovora CFBP1430]
          Length = 459

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 133/405 (32%), Positives = 216/405 (53%), Gaps = 16/405 (3%)

Query: 3   FADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY+  TP+Q +++P +L   DV   A+TG+GKTA+F L ++ 
Sbjct: 4   FSTLTQLPASQIDNLNELGYLAMTPVQAESLPAILAGRDVRAQAKTGSGKTAAFGLGVMH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++  +    + + L+L PTRELA QV     +  +  +    L + G  P  AQ   L 
Sbjct: 64  RVDASQ---YVTQALVLCPTRELADQVTKELRRLARFTSNIKILTLCGGQPVGAQRDSLL 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILDH  R  L ++ I  LV+DEADRML+MGF   I  I S  P TRQT
Sbjct: 121 HAPHIVVGTPGRILDHLQRETLKLDAINTLVLDEADRMLEMGFREDIDAIISHSPQTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    + +      Q+ +R  +   +     +       Y   S++       L 
Sbjct: 181 LLFSATWPQAIAQ----ISQSIQRNPLTIETGDVSDLPAIEQTFYEAASREKLTALIGLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+    + ++FCN K+   ++ ++L+K   S   +HG+++QR R ++L  F  G+ +++V
Sbjct: 237 SERQPSSCVVFCNTKRECDDIAYALDKAQISAQPLHGDLEQRERDQMLIRFANGSCRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+ +    E ++HRIGRT RAG+ G A + V+ +++    A+
Sbjct: 297 ATDVAARGLDIKALPMVVNYQLSFDPEVHVHRIGRTARAGQEGCAVSFVSPDEMIRAHAL 356

Query: 361 EKLIEKKVDWLNGDLSSLN-----PPLEKIDIAQHNHARKNNPIP 400
           E  +++K+ W N  LS+L      P L ++     +  RK    P
Sbjct: 357 EDYLQQKLVWCN--LSALKSVAARPLLAEMVTVSLDGGRKAKIRP 399


>gi|238481240|ref|NP_001154707.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|332004264|gb|AED91647.1| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]
          Length = 468

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 90/415 (21%), Positives = 159/415 (38%), Gaps = 40/415 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D+G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 48  FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +E    +V                     F  Y  +  ++V      I       K E  
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECP 167

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +     +   L N    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 168 HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V + F+Q+  R       +            + ++ +    L       
Sbjct: 228 FSATLSKEIRPVCKKFMQDGLRTLSGDSVALWWVGFGSGYCVFPRFHRARMGLNVPSNID 287

Query: 243 DT---------------------------------------MKNGIIFCNQKKNVVNLCH 263
                                                        +IF         L  
Sbjct: 288 PMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNK 347

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
            L +  F    IH  + Q  R+    +FKEG  +++VA+DL  RG+DI  V  V N+D+P
Sbjct: 348 LLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMP 407

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
           + A+ Y+HR+GR GR G  G A T V +  D + ++ +++  E  +  L   + +
Sbjct: 408 DSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDT 462


>gi|160358722|sp|A6R603|SUB2_AJECN RecName: Full=ATP-dependent RNA helicase SUB2
          Length = 442

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 150/373 (40%), Gaps = 5/373 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++ A+ D G+  P+ +Q   IP  +   DV   A++G GKTA FVL  L  
Sbjct: 61  FRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQ 120

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                G   + +         +        +         +           E  + K  
Sbjct: 121 LEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIELLSSKDT 180

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             + V+           ++   L N    ++ +    +  +     +Q I    P  +Q 
Sbjct: 181 YPSIVVGTPGRLNALVRDKKLSLRNIKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQV 240

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ E++ + + F++NP  + V+  +         +     +  K   L +    
Sbjct: 241 MMFSATLSQEVRPICKKFMRNPLEVYVDDDTKLTLHGLLQYYIKLGESEKNRKLNEL--L 298

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF    +    L   L +  F   A+H  + Q  R+K    FKE   ++ V
Sbjct: 299 DSLEFNQVIIFVKSTQRASELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICV 358

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+  RG+DI  +    N+D+P  A++Y+HR+GR GR G  G A + V+ E D + +  
Sbjct: 359 ATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVSSEQDQEVLKD 418

Query: 360 IEKLIEKKVDWLN 372
           IEK  E  +    
Sbjct: 419 IEKRFEVALPEYP 431


>gi|121711124|ref|XP_001273178.1| ATP dependent RNA helicase (Dbp5), putative [Aspergillus clavatus
           NRRL 1]
 gi|134034073|sp|A1CFV3|DBP5_ASPCL RecName: Full=ATP-dependent RNA helicase dbp5
 gi|119401328|gb|EAW11752.1| ATP dependent RNA helicase (Dbp5), putative [Aspergillus clavatus
           NRRL 1]
          Length = 487

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 108/400 (27%), Positives = 200/400 (50%), Gaps = 21/400 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVL-P 58
           +F DLGL P+++  +    + KP+ IQ + +PL+L     ++ G +Q+GTGKTA+FVL  
Sbjct: 78  NFEDLGLDPRILKGLSAMNFRKPSKIQERALPLLLGNPPKNLVGQSQSGTGKTAAFVLNA 137

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  +        + P+ LIL PTRELA Q+       G+  +    ++   +P +  N+ 
Sbjct: 138 LSRVDLSTEQMQKTPQALILAPTRELARQIVGVVSVMGQFLD--GLIIGTAVPADINNRP 195

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFIPYIQNITSLVPFT 177
                 + + TPG ++D   R  ++ N +++LV+DEAD M    G       + +L+P  
Sbjct: 196 KRLECSIAVGTPGTVMDMIKRRIMVPNKLKVLVLDEADNMLDQQGLGDQCIRVKALLPRD 255

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q +LFSAT  D +   +  F  N   + +     T E I+  ++    +  K   L+Q 
Sbjct: 256 IQVVLFSATFPDHVHAYAAKFAPNANELTLQHEELTVEGIKQLYLDCSDEEDKYKTLVQL 315

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                 T+ + IIF   + +   +   +  +G +V ++ G ID   R +I+  F+ G  +
Sbjct: 316 --YGLLTVGSSIIFVQTRTSASEIEKRMVAEGHTVASLTGGIDVTKRDEIIDKFRSGEAK 373

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPN-----------RAENYIHRIGRTGRAGRHGKAF 346
           +++ +++ ARG+D+  V  V N+D+P              + Y+HRIGRTGR GR G + 
Sbjct: 374 VLITTNVLARGIDVSTVSMVINYDIPELHRPGVPERQADFQTYLHRIGRTGRFGRVGVSI 433

Query: 347 TLVA-KEDIKHIDAIEKLIEKKVDWLN-GDLSSLNPPLEK 384
           + V+ +E+   ++ I++    ++  ++  D   +   ++K
Sbjct: 434 SFVSNREEWDMLNQIQRYFNTEIQRVDTKDWDEVEDIIKK 473


>gi|210075100|ref|XP_499972.2| YALI0A11157p [Yarrowia lipolytica]
 gi|218551749|sp|Q6CH90|SUB2_YARLI RecName: Full=ATP-dependent RNA helicase SUB2
 gi|199424876|emb|CAG83901.2| YALI0A11157p [Yarrowia lipolytica]
          Length = 441

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 146/375 (38%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q   IP  +   DV   A+ G GKTA FVL  L  
Sbjct: 59  FRDFLLKPELLRAIVDCGFEHPSEVQQVCIPQSILGTDVLCQAKAGVGKTAVFVLSTLQQ 118

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                G   V +         + +      +         +           E    K  
Sbjct: 119 LEPVPGECSVVVLCHTRELAYQIMNEYARFSKYLPDVKTAVFYGGSPIQKDIELIQNKET 178

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++           ++   L N    ++ +    +  +     +Q I  + P  +Q 
Sbjct: 179 SPHVIVATPGRLHALVRDKHLRLGNVKTFVIDECDKVLDQIDMRRDVQEIFRVTPRQKQV 238

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ E++ + + F+ +P  I V+            +     + SK        L 
Sbjct: 239 MMFSATLSQEIRPICKKFMSSPLEILVDDEGKLTLHGLQQYYVDVEEKSKNR--KLGDLL 296

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF         L   L   GF   A+H  I Q  R+     FKE   ++ V
Sbjct: 297 DNLEFNQVIIFVKSTSRANGLSQVLNANGFPCTAVHSGIPQEERIARYKEFKEFKKRICV 356

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           ++D+  RG+DI  +    N+D+P  A+ Y+HR+GR GR G  G A + V   ED + +  
Sbjct: 357 STDVFGRGIDIERINLAINYDLPAEADQYLHRVGRAGRFGTKGLAISFVSTPEDKEVLAK 416

Query: 360 IEKLIEKKVDWLNGD 374
           I++  E  +     +
Sbjct: 417 IQERFEVNIAPYPAE 431


>gi|256269719|gb|EEU04989.1| Dbp3p [Saccharomyces cerevisiae JAY291]
          Length = 523

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 109/406 (26%), Positives = 190/406 (46%), Gaps = 7/406 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L L   +   +    + KPTPIQ    P +L   DV G+A+TG+GKT +F +P +
Sbjct: 114 LSFDYLSLDSSIQAEISK--FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAI 171

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + L     + R  + L++ PTRELA+Q+ DN         +    + GG+P + Q  +L+
Sbjct: 172 SHL-MNDQKKRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLK 230

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V+      +         L     +++ +    +           I       RQT
Sbjct: 231 KSQVVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQT 290

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV----ATYAQYSKKCALLQ 236
           L+F+AT   E+++++  F+ NP ++ +              +        +  K   LL+
Sbjct: 291 LMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLK 350

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +        +  +IF   KK    +  +L+  G++V AIHG++ Q+ R + L+ FK G  
Sbjct: 351 KYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKS 410

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L++A+D+AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG+ G A TL  +++   
Sbjct: 411 NLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEKHL 470

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
              +  ++      +  DL       +K + + +    K+  + +K
Sbjct: 471 AGGLVNVLNGANQPVPEDLIKFGTHTKKKEHSAYGSFFKDVDLTKK 516


>gi|190407035|gb|EDV10302.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
 gi|207345345|gb|EDZ72198.1| YGL078Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259146428|emb|CAY79685.1| Dbp3p [Saccharomyces cerevisiae EC1118]
          Length = 523

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 109/406 (26%), Positives = 190/406 (46%), Gaps = 7/406 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L L   +   +    + KPTPIQ    P +L   DV G+A+TG+GKT +F +P +
Sbjct: 114 LSFDYLSLDSSIQAEISK--FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAI 171

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + L     + R  + L++ PTRELA+Q+ DN         +    + GG+P + Q  +L+
Sbjct: 172 SHL-MNDQKKRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLK 230

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V+      +         L     +++ +    +           I       RQT
Sbjct: 231 KSQVVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQT 290

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV----ATYAQYSKKCALLQ 236
           L+F+AT   E+++++  F+ NP ++ +              +        +  K   LL+
Sbjct: 291 LMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLK 350

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +        +  +IF   KK    +  +L+  G++V AIHG++ Q+ R + L+ FK G  
Sbjct: 351 KYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKS 410

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L++A+D+AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG+ G A TL  +++   
Sbjct: 411 NLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEKHL 470

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
              +  ++      +  DL       +K + + +    K+  + +K
Sbjct: 471 AGGLVNVLNGANQPVPEDLIKFGTHTKKKEHSAYGSFFKDVDLTKK 516


>gi|61367710|gb|AAX43036.1| eukaryotic translation initiation factor 4A isoform 1 [synthetic
           construct]
          Length = 407

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 202/378 (53%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 33  SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E     ++  + L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 93  QIEL---DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 149

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q 
Sbjct: 150 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 209

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L      
Sbjct: 210 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL--Y 267

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 268 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 327

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V +ED + +  I
Sbjct: 328 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 387

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E +    ++ +  +++ L
Sbjct: 388 ETIYNTSIEEMPLNVADL 405


>gi|6321360|ref|NP_011437.1| Dbp3p [Saccharomyces cerevisiae S288c]
 gi|1708151|sp|P20447|DBP3_YEAST RecName: Full=ATP-dependent RNA helicase DBP3; AltName: Full=DEAD
           box protein 3; AltName: Full=Helicase CA3
 gi|172582|gb|AAA73137.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|1322595|emb|CAA96783.1| DBP3 [Saccharomyces cerevisiae]
 gi|285812127|tpg|DAA08027.1| TPA: Dbp3p [Saccharomyces cerevisiae S288c]
          Length = 523

 Score =  131 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 109/406 (26%), Positives = 190/406 (46%), Gaps = 7/406 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L L   +   +    + KPTPIQ    P +L   DV G+A+TG+GKT +F +P +
Sbjct: 114 LSFDYLSLDSSIQAEISK--FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAI 171

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + L     + R  + L++ PTRELA+Q+ DN         +    + GG+P + Q  +L+
Sbjct: 172 SHL-MNDQKKRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLK 230

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V+      +         L     +++ +    +           I       RQT
Sbjct: 231 KSQVVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQT 290

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV----ATYAQYSKKCALLQ 236
           L+F+AT   E+++++  F+ NP ++ +              +        +  K   LL+
Sbjct: 291 LMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLK 350

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +        +  +IF   KK    +  +L+  G++V AIHG++ Q+ R + L+ FK G  
Sbjct: 351 KYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKS 410

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L++A+D+AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG+ G A TL  +++   
Sbjct: 411 NLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEKHL 470

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
              +  ++      +  DL       +K + + +    K+  + +K
Sbjct: 471 AGGLVNVLNGANQPVPEDLIKFGTHTKKKEHSAYGSFFKDVDLTKK 516


>gi|323354469|gb|EGA86308.1| Hca4p [Saccharomyces cerevisiae VL3]
          Length = 770

 Score =  131 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 122/473 (25%), Positives = 209/473 (44%), Gaps = 32/473 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F DL +S   +  + ++ ++K T IQ  +IP+ LQ HDV   A+TG+GKT +F++P +  
Sbjct: 43  FKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEK 102

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  +          LI+ PTRELA Q+ +   K G + + +  L+IGG   + + +++ R
Sbjct: 103 LYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISR 162

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +        L  +N+++LV+DEADR LDMGF   +  I S +  +RQTL
Sbjct: 163 INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSRQTL 222

Query: 182 LFSATMTDELQK-----VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           LFSAT +  +       +++        +   + +  A T E                + 
Sbjct: 223 LFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLDIL 282

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEG 294
                       I+F +  K V  +  +  K    +    +HG   QR+R + L  F   
Sbjct: 283 FSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDKFNRA 342

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
               + A+D+ ARG+D P V  V   D P   + YIHR+GR  R G+ GK+  ++  ++ 
Sbjct: 343 QQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQEQ 402

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +    +++L  +K++   G L+                 +K+     +S  F   +  Y 
Sbjct: 403 EAF--LKRLNARKIE--PGKLNI------------KQSKKKSIKPQLQSLLFKDPELKYL 446

Query: 415 SQKSHIPLKESEKISKLQQDIQ------ENDADSLGFRGNMPAFMLPKNRGKL 461
            QK+ I    S  + K +Q  +      E  A SLG  G  P  +  K    +
Sbjct: 447 GQKAFISYVRSIYVQKDKQVFKFDELPTEEFAYSLGLPG--PPKIKMKGMKTI 497


>gi|242004721|ref|XP_002423227.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212506206|gb|EEB10489.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 579

 Score =  131 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 116/338 (34%), Positives = 183/338 (54%), Gaps = 3/338 (0%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F + G    V+  +   G+ +PT IQ +  P+ L   ++ GIA+TG+GKT S++LP +  
Sbjct: 101 FREAGFPDYVLKEIKRQGFSEPTVIQAQGWPIALSGRNLVGIAKTGSGKTLSYILPAIVH 160

Query: 63  LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +       R   P  L+L PTRELA Q+ +  E +G +  +    + GG    +Q + LE
Sbjct: 161 INHQPRLQRGDGPIVLVLAPTRELAQQIKEVTEDFGHSSGIRNTCIFGGAKRLSQARDLE 220

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G +++I TPGR+LD  + GK  +     LV+DEADRMLDMGF P I+ I   +   RQ 
Sbjct: 221 KGVEIVIATPGRLLDFLDCGKTNLKRTTYLVLDEADRMLDMGFEPQIRKIFEQIKPDRQV 280

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLL 239
           L++SAT    ++ +++ FL +  +I V +   +A       +       K+         
Sbjct: 281 LMWSATWPKVVRNLAKEFLNDYTQINVGSLQLSANHNILQIIDVCQDSEKERKLSTLLKE 340

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     I+F   KK V  +   + + G+   +IHG+ +Q  R  +L +F+ G   ++
Sbjct: 341 IMSEKENKTIVFIETKKRVEEITRKMRRDGWPAESIHGDKNQSERDHVLQDFRNGRRPIL 400

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           VA+D+AARGLD+ DV  V NFD PN +E+Y+HRIGRT 
Sbjct: 401 VATDVAARGLDVEDVKFVINFDYPNNSEDYVHRIGRTA 438


>gi|59712046|ref|YP_204822.1| DEAD-box ATP dependent DNA helicase [Vibrio fischeri ES114]
 gi|59480147|gb|AAW85934.1| ATP-dependent RNA helicase, DEAD box family [Vibrio fischeri ES114]
          Length = 421

 Score =  131 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 136/389 (34%), Positives = 216/389 (55%), Gaps = 13/389 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGL   ++  + +  Y +PTPIQ + IP VL   D+   A TG+GKTA+F LP+L 
Sbjct: 9   NFTELGLISPLLARLTELEYQQPTPIQAQAIPSVLAGRDLIAGANTGSGKTATFALPLLQ 68

Query: 62  IL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113
            +      +   ++      L+L PTRELA QVAD+ + Y  ++N  +    + GG+   
Sbjct: 69  QIAELQSGKAQASKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGAIKTVSVFGGVSVN 128

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  GAD+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  + +L
Sbjct: 129 TQMLALRGGADILVATPGRLLDLISSNAVKLDKVKTLVLDEADRMLSLGFTEELNELLAL 188

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
            P  +QTLLFSAT  +E+Q +++  L NP  I++ +  ++        V    + S    
Sbjct: 189 APKQKQTLLFSATFPEEVQTLTQALLNNPVEIQLQSADASTVVQRVFTVNKGEKTSVLAH 248

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L+Q+        +  +IF N K    +L   L K+G +    HG+  Q +R ++L  FK 
Sbjct: 249 LIQKNQW-----RQALIFVNAKNACNHLADKLAKRGIAAEVFHGDKGQGARTRVLEAFKA 303

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I +++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G A +L+  ED
Sbjct: 304 GEIDVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLALSLIDYED 363

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPL 382
             H   IEK  + +++    +   +N  +
Sbjct: 364 YHHFKIIEKKNKIRLEREQVEGFEVNEEI 392


>gi|27367453|ref|NP_762980.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|27359022|gb|AAO07970.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
          Length = 412

 Score =  131 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 139/424 (32%), Positives = 216/424 (50%), Gaps = 12/424 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS +++ A+    + KPT IQ   IP +L   D+  +A TG+GKT ++ LP+L
Sbjct: 1   MPFSTLSLSSELIHALPK-DFKKPTDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  +    IL P RELA QV++   + G+   L    L GG+  E Q + L 
Sbjct: 60  EKLGVNPEQKAL----ILVPIRELATQVSEAINQVGQALGLNAVCLCGGVDKEQQLQALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ T GR++D  N G  L N    LV+DEADR+L+MGF P +QNI   +   RQT
Sbjct: 116 TNPHILVATTGRLVDLANNGLDLSNI-HYLVLDEADRLLNMGFWPDVQNIAGQISNQRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT +DEL+  ++  +Q PK++  +  +ST + I             K  +      
Sbjct: 175 AMFSATFSDELKGKAKLLMQAPKQVAAHQENSTNQDIAETLYLVNKGSKTKALIEL---I 231

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     ++F   K+N   L   L K G S  A+HG+  Q  R   L+ FK G  Q+++
Sbjct: 232 QKNAWTQALVFIGAKENADGLAKKLNKAGISTNALHGDKSQAEREAALAQFKSGQTQVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG  G A +LV   ++  + AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVALSLVCHGEMDALSAI 351

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
             L ++++     DL    P  +K    +   A ++    +++      K+  S  K   
Sbjct: 352 RHLTQRELPV--QDLEGF-PVTDKPSTGESKRAPRDKKANRRTQNKKSVKQFQSKAKRPA 408

Query: 421 PLKE 424
           P  +
Sbjct: 409 PKSK 412


>gi|46136501|ref|XP_389942.1| hypothetical protein FG09766.1 [Gibberella zeae PH-1]
 gi|91206536|sp|Q4HZ42|DBP10_GIBZE RecName: Full=ATP-dependent RNA helicase DBP10
          Length = 897

 Score =  131 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 128/396 (32%), Positives = 206/396 (52%), Gaps = 31/396 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ K IPL+L R D+ G+A+TG+GKTA+FV+PM+  
Sbjct: 84  FQAMGLNNNLLKAITRKGFSVPTPIQRKAIPLILDRKDLVGMARTGSGKTAAFVIPMIEK 143

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L    AR    R LI+ P+RELA Q     +++ +  +L   LL+GG   E Q   +   
Sbjct: 144 LRAHSAR-FGTRALIMSPSRELAIQTLKVVKEFSRGTDLKCVLLVGGDSLEEQFGYMAAN 202

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P +RQ+LL
Sbjct: 203 PDIVIATPGRFLHLKVEMSLDLSSIKYVVFDEADRLFEMGFAAQLTEILHALPPSRQSLL 262

Query: 183 FSATMTDELQKVSENFLQNPK------------------------------RIEVNTPSS 212
           FSAT+   L + +   LQ+P                                  ++    
Sbjct: 263 FSATLPASLVEFARAGLQDPSLVRLDAEQKVSPDLESAFFAVKGAEKEGSLLHILHDVIK 322

Query: 213 TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
                         + SKK          + T  + IIF   K +V  L + L   GF+V
Sbjct: 323 MPVGSPEGVNNDSEKGSKKRKRGADGGSGKPTEHSTIIFTATKHHVEYLANLLIYAGFAV 382

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
             ++G++DQ +R   + +F+ G   ++V +D+AARG+DIP + +V NFD P + + ++HR
Sbjct: 383 SYVYGSLDQTARRIQVEDFRMGKTNILVVTDVAARGIDIPVLANVINFDFPPQPKVFVHR 442

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           +GRT RAG+ G +++LV   D  ++  ++  + KK+
Sbjct: 443 VGRTARAGQRGWSYSLVRDTDAPYLIDLQLFLGKKL 478


>gi|294932648|ref|XP_002780372.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Perkinsus
           marinus ATCC 50983]
 gi|239890305|gb|EER12167.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Perkinsus
           marinus ATCC 50983]
          Length = 566

 Score =  131 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 108/408 (26%), Positives = 184/408 (45%), Gaps = 10/408 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL +   +  A+    +   T IQ K IPL+L+  DV G A+TG+GKT +F++P L 
Sbjct: 71  KFTDLQICDPLKEALTACSFTTMTDIQAKAIPLMLKGKDVLGAAKTGSGKTLAFLVPALE 130

Query: 62  ILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L   R + +     +I+ PTRELA Q+ D  ++   +  L+    I       +N+  +
Sbjct: 131 LLVATRFQPKNGTGVMIISPTRELAMQIFDVCKRLVDSTKLSQTYGIVMGGVNRKNEADK 190

Query: 121 RGADVLI---CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
               + I        +    N    +  N+  LVIDEADR+L +GF   +  I  ++P  
Sbjct: 191 LSRGINILVATPGRLLDHLQNTRGFVYANLMSLVIDEADRILQIGFEEDMNQILKILPKK 250

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVN--TPSSTAETIEHCFVATYAQYSKKCALL 235
           RQT LFSAT T ++  ++   L+ P  ++       +   T                  L
Sbjct: 251 RQTSLFSATQTQKVNDLARLSLKKPIFVQSKGADDDAAISTASGLVQGYVVVGGDDRLRL 310

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 ++  K  ++F +   +V      L      V +IHG   Q +RM     F +  
Sbjct: 311 LFTFLKKNQKKKVMVFFSSCNSVKFHDELLNYIDIPVISIHGQKKQSARMTNFYRFCQME 370

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDI 354
             +++ +D+AARGLDIP V  +  +D P+  + YIHR+GRT R     GKA   +  E++
Sbjct: 371 SGILLCTDVAARGLDIPKVDWIVQYDPPDDPKEYIHRVGRTARGAEGTGKALLFLMPEEL 430

Query: 355 KHIDAIEKLIEKKVDWL---NGDLSSLNPPLEKIDIAQHNHARKNNPI 399
             +  + K     ++        ++++   LEK+  + ++  R +   
Sbjct: 431 GFLRYLRKSGVTTLNEYVFPPAKVANIQHQLEKLVESNYHLHRASRDA 478


>gi|301106809|ref|XP_002902487.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262098361|gb|EEY56413.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 470

 Score =  131 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 116/445 (26%), Positives = 180/445 (40%), Gaps = 36/445 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DLG+  + V  + +     PT IQ K+IP +L RHD+   AQTGTGKT ++++P++ 
Sbjct: 35  SFQDLGVDARTVSGLKEMKITTPTGIQQKSIPAILARHDILCAAQTGTGKTLAYLVPVIE 94

Query: 62  ILEKGRARVR--------------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
            + +  A  +               P  L+L P+RELA QVA   ++   +       + 
Sbjct: 95  QILRKEAAKKLERETKGPTEVVLGRPSALVLLPSRELALQVASVAKQLSHSAKFASCTIT 154

Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167
            G     Q K   R  D++I TPGR+    ++G   ++ I+ +V+DEAD + D       
Sbjct: 155 SGERKSIQQKNTSRRLDLIIGTPGRVAKCISKGDFFVSCIDTVVVDEADTLFDAKMGFRK 214

Query: 168 Q--------NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
           +          ++        ++ +A                  R+  +           
Sbjct: 215 ELDAVLGTIQASAAKRNQSLQMILAAATIRSPIDQILKKKFGELRVVSDDKIHKTPASIR 274

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV--NLCHSLEKQGFSVCAIHG 277
                    SK  AL + L   +      +IFC    +V              +VC    
Sbjct: 275 EEFVRVNPESKHSALREALHLHRRRAAKTMIFCRNSASVRSTEHMLREHGFQDAVCLHGD 334

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
               R    I +  ++  + ++V +DLAARGLD+  V HV  FD P  A +Y+HR GRTG
Sbjct: 335 MPPARRHDAIHAFTEDSNVNILVCTDLAARGLDVEAVKHVVMFDFPKSAVDYVHRAGRTG 394

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397
           RAG  G   +LV K D+    +IE          N   S+      + D +    AR+  
Sbjct: 395 RAGEQGLVTSLVTKHDLTLAMSIE----------NSKRSNSTIKELREDTSTRKTARREP 444

Query: 398 PIPQKSTGFDRRKKNYSSQKSHIPL 422
              QK +GF R  K     K   P 
Sbjct: 445 --SQKRSGFGRGTKKLLRHKIRTPR 467


>gi|154293477|ref|XP_001547268.1| hypothetical protein BC1G_13890 [Botryotinia fuckeliana B05.10]
 gi|150845271|gb|EDN20464.1| hypothetical protein BC1G_13890 [Botryotinia fuckeliana B05.10]
          Length = 636

 Score =  131 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 103/404 (25%), Positives = 169/404 (41%), Gaps = 25/404 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D GL P ++  +  AGY  PTPIQ   +P + + HDV   AQTG+GKTA+F++P+L+ 
Sbjct: 156 FEDAGLHPVMLENIKLAGYHVPTPIQQYCLPAIKKDHDVVACAQTGSGKTAAFLIPILSK 215

Query: 63  LEKGRARVRMPRTL-------------------ILEPTRELAAQVADNFEKYGKNYNLTV 103
           L     ++  PR                     ++ P+RELA Q+ D   ++     L  
Sbjct: 216 LMGKAKKLAAPRPNPATYVPDRDNYVRAEPLVVVVCPSRELATQIFDEARRFCYRSMLRP 275

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163
            ++ GG P   Q  +L +G D+LI TPGR+ D   R   L       ++ +    +    
Sbjct: 276 CVVYGGGPLVEQLSQLAKGCDLLIGTPGRLCDMIRRPHALTLKRLKYMVIDEADEMLDSS 335

Query: 164 IPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
                          +  +     +    K++    +     +            H  + 
Sbjct: 336 WEEELKQIMSGGDQEEGNIIYMMFSATFPKMARAIAKEHLAHDHVRIRVGRAGSSHTNIK 395

Query: 224 TYAQYSKKCALLQQLLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
               Y +  +  Q L            IIF N K++   +   L        +IH +  Q
Sbjct: 396 QDIIYVEAASKRQALYDLLLSTPPARTIIFVNTKRSADEIDDYLFNNDLPCTSIHSDRTQ 455

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNR----AENYIHRIGRTG 337
           R R   +  F+ G + +++A+ ++ARGLD+ +V HV NFD+P+      E Y HRIGRTG
Sbjct: 456 REREDSIRAFRNGKMPILIATGVSARGLDVHNVMHVINFDLPSNDHGGIEEYTHRIGRTG 515

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
           R G  G A +     +    +A+ K + +    +   L +  P 
Sbjct: 516 RIGNMGLASSFYNDRNEDIAEALVKTLLETRQPVPDFLEAYLPE 559


>gi|307706950|ref|ZP_07643749.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
 gi|307617664|gb|EFN96832.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
          Length = 447

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 201/452 (44%), Gaps = 43/452 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  ++ PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALEELKFITPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   +  + V ++      +   +  +
Sbjct: 61  QQLDETSDSVQAV---ITAPSRELATQIYQAARQIAAHSEVEVRVVNYVGGTDKARQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++     V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKANTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +          
Sbjct: 178 LQLMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 237 --TQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL-------------------------IEKKVDWLNGDLSSL---------NPPLE 383
             +EKL                          EKK D L+ ++  L             +
Sbjct: 355 RELEKLGIKFTPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKKKKVKPGYKK 414

Query: 384 KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           KI  A     RK      ++ G   RK    +
Sbjct: 415 KIQWAVDEKRRKTKRAENRARGRAERKAKRQT 446


>gi|156843946|ref|XP_001645038.1| hypothetical protein Kpol_1072p50 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380640|sp|A7TKR8|DED1_VANPO RecName: Full=ATP-dependent RNA helicase DED1
 gi|156115693|gb|EDO17180.1| hypothetical protein Kpol_1072p50 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 650

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 136/422 (32%), Positives = 212/422 (50%), Gaps = 19/422 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
           +F    L   ++  ++ A + KPTP+Q  ++P+V +  D+   AQTG+GKT  F+ P   
Sbjct: 161 EFTSPPLDALLLENIILARFTKPTPVQKYSVPIVSRGRDLMACAQTGSGKTGGFLFPVLS 220

Query: 59  ---------MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                    M     K   +   P  L+L PTRELA Q+ D  +K+     +   ++ GG
Sbjct: 221 ESFKNGPSPMPESARKSFVKKAYPTALVLAPTRELATQIYDEAKKFTYRSWVRPTVVYGG 280

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
               +Q + L RG D+L+ TPGR+ D   RG++ + N++ LV+DEADRMLDMGF P I+ 
Sbjct: 281 SDIGSQIRDLSRGCDLLVATPGRLSDLLERGRVSLANVKYLVLDEADRMLDMGFEPQIRQ 340

Query: 170 ITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I            QTL+FSAT  D++Q ++ +FL +   + V    ST+E I    +   
Sbjct: 341 IVDGCDMPPVGERQTLMFSATFPDDIQHLARDFLSDYIFLSVGKVGSTSENITQRILYVE 400

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
               K   L      +       +IF   K+    L   L  Q F   AIHG+  Q  R 
Sbjct: 401 DMDKKSTLLDLLSASNDG---LTLIFVETKRMADELTDFLIMQDFRATAIHGDRTQSERE 457

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L+ FK G   L+VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A
Sbjct: 458 RALAAFKNGNANLLVATAVAARGLDIPNVTHVVNYDLPSDIDDYVHRIGRTGRAGNTGVA 517

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
                + +   +  + +L+ +    +   L+ +     +        +R N+    + +G
Sbjct: 518 TAFFNRGNRNIVKGMYELLAEANQEIPPFLNDVMRESGRGGRTSGFSSRNNSNRDYRRSG 577

Query: 406 FD 407
            +
Sbjct: 578 SN 579


>gi|154273869|ref|XP_001537786.1| hypothetical protein HCAG_07208 [Ajellomyces capsulatus NAm1]
 gi|160380620|sp|A6RC50|DBP5_AJECN RecName: Full=ATP-dependent RNA helicase DBP5
 gi|150415394|gb|EDN10747.1| hypothetical protein HCAG_07208 [Ajellomyces capsulatus NAm1]
          Length = 497

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 98/385 (25%), Positives = 185/385 (48%), Gaps = 18/385 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +LGL P ++  +    + +P+ IQ K +PL+L     ++ G +Q+GTGKTA+FVL +
Sbjct: 90  SFEELGLHPSILQGLHSMSFRRPSKIQEKALPLLLNNPPANMIGQSQSGTGKTAAFVLNI 149

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ L+        P+ L+L P+RELA Q+    +  G   +         +P E+   + 
Sbjct: 150 LSRLDLSPQMELAPQALVLAPSRELARQIVGVIQVMGSYVDKLKVATA--VPMESNRNQK 207

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V+      +     R     +   I++ +  + +   G       +  L+P   Q
Sbjct: 208 VEAPVVVGTPGTVMDLIRKRLFNPQHLKVIVLDEADNMLDQQGLGDQCIRVKGLLPKNIQ 267

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT  D + + +  F  N  +I +     T E I+  ++   +   K   L++   
Sbjct: 268 VVLFSATFPDHVVRYANKFAPNANQITLKHEELTVEGIKQLYLDCDSDEHKFDILVK--F 325

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+ + IIF   + + V +   +  +G +V ++ G ++ + R +I+  F++G  +++
Sbjct: 326 YGLLTIGSSIIFVKTRASAVEIERRMVAEGHTVVSLTGGVEGQKRDEIIDKFRQGDAKVL 385

Query: 300 VASDLAARGLDIPDVGHVFNFDVPN-----------RAENYIHRIGRTGRAGRHGKAFTL 348
           + +++ ARG+D+  V  V N+D+P             A+ Y+HRIGRTGR GR G A + 
Sbjct: 386 ITTNVLARGIDVQTVSMVINYDIPELHAPKATKRIADAQTYLHRIGRTGRFGRVGVAVSF 445

Query: 349 V-AKEDIKHIDAIEKLIEKKVDWLN 372
           V +KE+ + +  I+     ++  +N
Sbjct: 446 VASKEEWQMLQDIKTYFNTEIQRVN 470


>gi|17508543|ref|NP_492326.1| hypothetical protein R05D11.4 [Caenorhabditis elegans]
 gi|3878881|emb|CAA99891.1| C. elegans protein R05D11.4, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 581

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 90/402 (22%), Positives = 177/402 (44%), Gaps = 9/402 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+D  +SP ++  + +    +P+PIQ+++IP + +R +V   A TG+GKT +F LP++
Sbjct: 126 LRFSDSSMSPSLLNRLSENSIRQPSPIQMQSIPFMTERRNVLASAPTGSGKTLAFALPVI 185

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + + + R     +   +    +     +   +    +    A         +  +   
Sbjct: 186 DEILELKQRADYSSSNSSKLLAVVLEPTRELAAQTYTEFLKYCANTSISAANFSGEETDI 245

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS-----LVP 175
           + AD+L+ TP RI+ H ++         ++   +    +  G     +N  +        
Sbjct: 246 QHADILVSTPNRIVFHLDKIDTSSLRWLVVDESDRLFEVVEGQDKCFRNQLAAIYKACDA 305

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              +   FSAT + E++K  +  +     + V   +S+  +++        +  KK A+ 
Sbjct: 306 KCTRVAFFSATFSHEVEKWCKENIDEIGMVCVGERNSSNTSVKQKLTYCGTEDGKKIAIR 365

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L  S        +    +   +    S       V +I+     + R + +  F+ G 
Sbjct: 366 NLLRTSFKPPALVFVQSKDRAVQLVKLLSAIDSNLKVDSINSGKSDKERDETMERFRRGE 425

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++V ++L  RGLD+ DVG V N+D+P    +YIHR+GRTGRAG+ G A T     D+K
Sbjct: 426 IWVLVCTELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGRTGRAGKSGHAVTYFTDADMK 485

Query: 356 HIDAIEKLIEKK---VDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           +I +I  +I +    V     ++  ++   +K D+ +H   R
Sbjct: 486 YIKSIATVIRQSGFDVPEYLMEMKKVSRDRKK-DMLKHAPKR 526


>gi|258564346|ref|XP_002582918.1| eukaryotic initiation factor 4A-6 [Uncinocarpus reesii 1704]
 gi|237908425|gb|EEP82826.1| eukaryotic initiation factor 4A-6 [Uncinocarpus reesii 1704]
          Length = 398

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 205/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L  +++  V   G+ +P+ IQ + I  V++  DV   AQ+GTGKTA+F +  L 
Sbjct: 26  SFDAMNLRSELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++  + LIL PTRELA Q+       G   ++     IGG       K L  
Sbjct: 86  KVDTN---LKACQALILAPTRELAQQIQKVVVAIGDFMSIECHACIGGTSVRDDMKALSD 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +++++ V+DEAD ML  GF   I +I  L+P + Q +
Sbjct: 143 GPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++  V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 203 LLSATMPQDVLDVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A
Sbjct: 261 TVTITQAVIFCNTRRKVDWLTDKLIARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIA 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 321 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 381 QFYSTQIEEMPMNVADL 397


>gi|1619952|gb|AAB17005.1| putative RNA helicase [Saccharomyces cerevisiae]
          Length = 770

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 118/459 (25%), Positives = 207/459 (45%), Gaps = 30/459 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F DL +S   +  + ++ ++K T IQ  +IP+ LQ HDV   A+TG+GKT +F++P +  
Sbjct: 43  FKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEK 102

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  +          LI+ PTRELA Q+ +   K G + + +  L+IGG   + + +++ R
Sbjct: 103 LYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISR 162

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +        L  +N+++LV+DEADR LDMGF   +  I S +  +RQTL
Sbjct: 163 INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSRQTL 222

Query: 182 LFSATMTDELQK-----VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           LFSAT +  +       +++        +   + +  A T E                + 
Sbjct: 223 LFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLDIL 282

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEG 294
                       I+F +  K V  +  +  K    +    +HG   QR+R + L  F   
Sbjct: 283 FSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDKFNRA 342

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
               + A+D+ ARG+D P V  V   D P   + YIHR+GR  R G+ GK+  ++  ++ 
Sbjct: 343 QQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQEQ 402

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +    +++L  +K++   G L+                 +K+     +S  F   +  Y 
Sbjct: 403 EAF--LKRLNARKIE--PGKLNI------------KQSKKKSIKPQLQSLLFKDPELKYL 446

Query: 415 SQKSHIP------LKESEKISKLQQDIQENDADSLGFRG 447
            QK+ I       +++ +++ K  +   E  A SLG  G
Sbjct: 447 GQKAFISYVRSIYVQKDKEVFKFDELPTEEFAYSLGLPG 485


>gi|73960318|ref|XP_537128.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
           isoform 2 isoform 1 [Canis familiaris]
          Length = 620

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 120/404 (29%), Positives = 191/404 (47%), Gaps = 12/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF   G    +   +  +GY  PTPIQ++ IP+ L   DV   A TG+GKTA+F+LP+ 
Sbjct: 204 IDFEHCGFPEALNHNLKTSGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPV- 262

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADN-FEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +     + P  LIL PTRELA Q+ +   E       +   LL+GG+P   Q  +L
Sbjct: 263 --ITRALCESKTPSALILTPTRELAIQIENQAKELMSGLPRMKTVLLVGGLPLPPQLYRL 320

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   V+I TPGR+LD   +  + +  I+I+V+DEAD ML MGF   + +I   VP   Q
Sbjct: 321 RQHVKVIIATPGRLLDIIKQSSVELCGIKIVVVDEADTMLKMGFQQQVLDILEHVPNDSQ 380

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+L SAT+   +++++   L NP RI     +    ++    +       KK        
Sbjct: 381 TILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCSSVRQIILWVEEPAKKKKLFEILND 440

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +    +    +      +  G    +IH    Q  R  IL    EG  +++
Sbjct: 441 KKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDYEVV 500

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +  RGLD+  V  V NFD+P+  + Y+H++GR GR G++G A T +     +    
Sbjct: 501 VSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWD 560

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           I K ++     L   L  LN P        H+  RK     +++
Sbjct: 561 IAKRVKPTGSILPPQL--LNSP------YLHDQKRKEQQKDKQT 596


>gi|74139596|dbj|BAE40935.1| unnamed protein product [Mus musculus]
          Length = 406

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 123/378 (32%), Positives = 200/378 (52%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 33  SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E     ++  + L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 93  QIEL---DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 149

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q 
Sbjct: 150 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 209

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I   +     +  +        L 
Sbjct: 210 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFY--INVEREEWRLDTLCDLY 267

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 268 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 327

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V +ED + +  I
Sbjct: 328 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 387

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      ++ +  +++ L
Sbjct: 388 ETFYNTSIEEMPLNVADL 405


>gi|328773520|gb|EGF83557.1| hypothetical protein BATDEDRAFT_15696 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 443

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 161/376 (42%), Gaps = 8/376 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A+ D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 59  FRDFLLKPELLRAIGDCGFEHPSEVQQECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 118

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN---LTVALLIGGIPFEAQNK-- 117
           L+   A        ++              E    +     +  A+L GG          
Sbjct: 119 LDTSAAAGAPSDPSVIVICHTRELAYQIKNEYARFSKYLPDVKTAVLYGGTSIRQNIDTL 178

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           K ++   ++      +    ++   L      ++ +    +  +     +Q+I    P  
Sbjct: 179 KNDKPQIIVATPGRLLALIRDKAINLATVKHFVLDECDKILDALDMRKDVQDIFRSTPHH 238

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +Q +++SAT++ E++ V + F+QNP  I V+  +         +    ++ +K       
Sbjct: 239 KQVMMYSATLSKEIRPVCKKFMQNPLEIFVDDQTKLTLHGLQQYYLKLSENAKTR--KLN 296

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L          IF    +  V L   L K GF    IH  + Q  R+    +FK+   +
Sbjct: 297 DLLDSLEFNQVCIFVKSVQRAVELDRLLVKCGFPSICIHSQLQQEERIARYKSFKDFEKR 356

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKH 356
           +MVA+D+  RG+D+  V  V N+D+ +  + Y+HR+GR GR G  G A T V + ED + 
Sbjct: 357 IMVATDIFGRGIDVERVNIVINYDMSDSPDAYLHRVGRAGRFGTKGLAITFVSSDEDTEV 416

Query: 357 IDAIEKLIEKKVDWLN 372
           ++ ++   E  +  L 
Sbjct: 417 LNQVQGRFEVNITELP 432


>gi|310795114|gb|EFQ30575.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 903

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 127/394 (32%), Positives = 212/394 (53%), Gaps = 29/394 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPL++ R DV G+A+TG+GKTA+FV+PM+  
Sbjct: 90  FQAMGLNANLLRAITKKGFSVPTPIQRKTIPLIMDRKDVVGMARTGSGKTAAFVIPMIER 149

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L    A+V   R LI+ P+RELA Q     +++ K  +L   LL+GG   E Q   +   
Sbjct: 150 LRAHSAKVGT-RALIMSPSRELALQTLKVVKEFSKGTDLKCILLVGGDSMEDQFSMMASN 208

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P +RQ+LL
Sbjct: 209 PDIVIATPGRFLHLKVEMGLDLSSIKYVVFDEADRLFEMGFAAQLTEILHALPPSRQSLL 268

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   LQ+P  + ++  +  +  +E  F +      +   L       +
Sbjct: 269 FSATLPASLVEFARAGLQDPTLVRLDAETKVSPDLESAFFSVKGAEKEAALLHILSDLIK 328

Query: 243 DTM----------------------------KNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
                                           + IIF   K +V  L   L K G++V  
Sbjct: 329 MPHGTPDGVPLDVVPSKKRKREGEGRGKPTEHSTIIFAATKHHVEYLAQLLTKAGYAVSY 388

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           ++G++DQ +R     NF+ G   ++V +D+AARG+DIP + +V N+D P + + ++HR+G
Sbjct: 389 VYGSLDQEARRINTENFRNGRANILVVTDVAARGIDIPVLANVINYDFPPQPKVFVHRVG 448

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           RT RAG+ G A+++V + D  ++  ++  + +++
Sbjct: 449 RTARAGQRGWAYSIVRELDTPYLLDLQLFLGRRL 482


>gi|300783470|ref|YP_003763761.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
 gi|299792984|gb|ADJ43359.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
          Length = 500

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 123/363 (33%), Positives = 183/363 (50%), Gaps = 7/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGL   +V A+   G  +P PIQ  T+P  L   DV G  +TG+GKT  FVLP+L 
Sbjct: 3   TFAELGLPTPLVAALATQGVTEPFPIQAATLPHTLAGRDVLGRGRTGSGKTYGFVLPLLA 62

Query: 62  ILEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L  G  R     PR LIL PTRELA Q+  +     K   L    + GG+    Q  +L
Sbjct: 63  RLAAGPTRRKPGRPRALILAPTRELATQIEASILPLAKPLGLKTTTIFGGVSANPQITRL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++  PGR+ DH   G + ++ IEI V+DEAD M D+GF+P ++ I    P   Q
Sbjct: 123 RDGVDIVVACPGRLADHMRSGHVKLDAIEITVLDEADHMADLGFLPEVRRIMDQTPSRGQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT+ + +  + + F+ +P    V++  S   T+EH  +     +     +     
Sbjct: 183 RMLFSATLDNGVDVLVKRFMNDPITHSVDSAQSPVSTMEHHVLHLEETHRLPVLVDL--- 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++F   K     L   L   G     +HGN+ Q +R + L  F  GT + +
Sbjct: 240 --TAAPGRTLVFTRTKSRAKALTRKLVASGVPAVELHGNLGQNARTRNLEAFSSGTAKTL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   TL+    ++ +  
Sbjct: 298 VATDIAARGIHVDDVRLVIHADPPVEHKAYLHRSGRTARAGASGTVVTLMTDAQVRDVRD 357

Query: 360 IEK 362
           + +
Sbjct: 358 LTR 360


>gi|293332577|ref|NP_001169296.1| hypothetical protein LOC100383160 [Zea mays]
 gi|224028479|gb|ACN33315.1| unknown [Zea mays]
          Length = 508

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 125/391 (31%), Positives = 190/391 (48%), Gaps = 8/391 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+   L  +V+       + +P+PIQ    P +L   D  GIA TG+GKT +F +P L 
Sbjct: 91  SFSAAELPSQVLECCSA--FARPSPIQAHAWPFLLDGRDFIGIAATGSGKTIAFGVPALM 148

Query: 62  ILEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            + K           PR L+L PTRELA Q+AD   + G    +    L GG   E Q  
Sbjct: 149 HIRKKVGGKAGKKAVPRCLVLSPTRELAQQIADVLSEAGAPCGIKSVCLYGGTKKEPQIS 208

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G D++I TPGR+ D    G   +N +  +V+DEADRMLD+GF P ++ I S     
Sbjct: 209 ALKSGVDIVIGTPGRMKDLIEMGVCCLNEVSFVVLDEADRMLDLGFEPEVRAILSQTSSV 268

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRI--EVNTPSSTAETIEHCFVATYAQYSKKCALL 235
           RQ ++FSAT    + K+++ F+          +   +    +         +      L 
Sbjct: 269 RQMVMFSATWPLAVHKLAQEFMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRTRDSRLLA 328

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 Q      ++F   KK    +   L+++G+   ++HG+  Q  R K LS FKEG 
Sbjct: 329 LLDKYHQAQSNRVLVFVLYKKEAARVETMLQRRGWKAVSVHGDKAQHDRTKALSLFKEGK 388

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             LM+A+D+A+RGLDIPDV  V N+  P   E+Y+HRIGRTGRAG+ G A T   + +  
Sbjct: 389 CPLMIATDVASRGLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTFFTQANKA 448

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
               +  ++ +    +   L      ++K +
Sbjct: 449 LAGELVNVLREADQVVPPALMKFGTHVKKKE 479


>gi|51467996|ref|NP_001003876.1| probable ATP-dependent RNA helicase DDX56 [Danio rerio]
 gi|49619091|gb|AAT68130.1| DEAD/H box 56 RNA helicase/noh61 [Danio rerio]
          Length = 557

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 112/496 (22%), Positives = 210/496 (42%), Gaps = 44/496 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F ++GL  +++ A+ D G+ +PT IQ K IPL L+  D+   A+TG+GKTA++ +P++  
Sbjct: 8   FHEMGLDDRLLKALADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAVPLIQR 67

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEK--YGKNYNLTVALLIGGIPFEAQNKK 118
               K   R +  R ++L PT+EL  QV     +     + ++ VA + G     AQ   
Sbjct: 68  VLTSKQTVREQAVRAVVLVPTKELGQQVQTMIRQLTAYCSRDVRVADISGKADLSAQKPI 127

Query: 119 LERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L    D+++ TP RI  H N     L +++E+LVIDEAD +   GF   ++N+   +P  
Sbjct: 128 LMEKPDIVVSTPSRIQAHINAQNLQLHSSLEMLVIDEADLLFSFGFEADLKNLLCHLPKI 187

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q  L SAT+ D++Q + E  L NP  +++        +    F     +  K   +   
Sbjct: 188 YQAFLMSATLNDDVQALKELVLHNPVTLKLQGSQLPDSSQLQQFSIKCEEEDKFLLIYTM 247

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L       K  +   +  ++        +    +               I    +     
Sbjct: 248 LKLGLIQGKTLLFVSDVDRSYRLKLFLEQFSIPACVLNSELPVHSRCHIISQFNQGFYNY 307

Query: 298 LMVASDL--------------------------------AARGLDIPDVGHVFNFDVPNR 325
           ++ + +                                  +RG+D  +V +V NFD P  
Sbjct: 308 IIASDEQGLESPAGSSQKTQEKGKKKKGTGKKGKDKEYGVSRGIDFHNVSNVINFDFPTS 367

Query: 326 AENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
            E+YIHR+GRT RA   G A + ++  ++  +  +E  +    D  N  L      +E+I
Sbjct: 368 VESYIHRVGRTARADNPGTALSFISHAELSMLSEVENAL--TGDSNNCVLKPYEFRMEEI 425

Query: 386 DIAQHNHARKNNPIPQKSTGFDR----RKKNYSSQKSHIPLKESEK-ISKLQQDIQENDA 440
           +  ++        + +++    R    +++  +S+K     +++ + +  L+ D   + A
Sbjct: 426 EGFRYRCRDGMRSVTKQAVKEARLKEIKQELLNSEKLKTYFEDNPRDLQLLRHDKDLHPA 485

Query: 441 DSLGFRGNMPAFMLPK 456
                  N+P +++P 
Sbjct: 486 IIKPHMKNVPEYLIPT 501


>gi|237840157|ref|XP_002369376.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211967040|gb|EEB02236.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|221483063|gb|EEE21387.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
 gi|221503995|gb|EEE29672.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 652

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 112/411 (27%), Positives = 194/411 (47%), Gaps = 7/411 (1%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           GL   ++  +   G  +PTPIQ++ IPL+L    +   A TG+GKT +F+  +  +    
Sbjct: 228 GLPTWLLQRLKTRGIEQPTPIQMQAIPLLLGGQHLLATAPTGSGKTFAFL--LPLLALLK 285

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           +      R L++ P+RELA Q    F+           LL        Q     +  D +
Sbjct: 286 KPGKEFARLLVVCPSRELAKQTQREFDSLAGARGFRCRLLDEQKQSVDQAASQAKRVDAV 345

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TP R++     G++ +     +V+DEAD++LD+G +   + +      + Q  LFSAT
Sbjct: 346 VTTPLRLVQFLRDGRVSLAQCRHIVLDEADKLLDLGQLD--EILAGCTFPSLQVSLFSAT 403

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
           +  ++ +++++ L NP  I + +P++ A +IE   +    +  K    L+ L  +   + 
Sbjct: 404 LPPDVLRLADSLLHNPVHISIGSPNAAATSIEQELLFCTNEEGK-LLALRTLHLTGKFVP 462

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
             +IF   K+    L   L   G  V  IH +  ++ R   +  F+ G I +++ +D+ A
Sbjct: 463 PVLIFVQSKERAKQLYCELVYDGIFVECIHADKTKKQRDDTVEAFRRGQIWVLICTDVMA 522

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RG+D  +V  V N+D P  A  YIHRIGRTGRAGR G+A T     DI ++ ++  ++++
Sbjct: 523 RGVDFKNVELVINYDFPQSAAVYIHRIGRTGRAGRQGRAITFYTTADIPNLRSVVGVMQQ 582

Query: 367 KVD-WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
                +   L  +     K        A +  PI   +   D RK+    Q
Sbjct: 583 TSTCEVPEWLQKVTKMTAKQKRDLQRRAPERKPI-LTTPAIDVRKEKRRQQ 632


>gi|152971432|ref|YP_001336541.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238896027|ref|YP_002920763.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae NTUH-K2044]
 gi|262040311|ref|ZP_06013562.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|150956281|gb|ABR78311.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238548345|dbj|BAH64696.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259042420|gb|EEW43440.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 443

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 136/413 (32%), Positives = 208/413 (50%), Gaps = 6/413 (1%)

Query: 17  LDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILEKGRARVRMPRT 75
            D G+ +PT IQ   IP  L   D+ G A TGTGKTA+++LP +  +L+  R +   PR 
Sbjct: 20  QDKGFTRPTAIQAAAIPPALDGRDILGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRI 79

Query: 76  LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +      D+++ T GR+L 
Sbjct: 80  LILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQ 139

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT-MTDELQKV 194
           +          +E L++DEADRMLDMGF   I+ I     + +QT+LFSAT   D ++  
Sbjct: 140 YIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQTMLFSATLEGDAIKDF 199

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           +E  L+ P  +  N  +   + I   +        K        L  Q      I+F  +
Sbjct: 200 AERLLEEPVEVSANPSTRERKKIHQWYYRADDIEHKTKL--LVNLLQQPEATRAIVFVRK 257

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           ++ V  L + L + G + C + G + Q  R + +    +G + +++A+D+AARG+DIPDV
Sbjct: 258 RERVHELANWLREAGINTCWLEGEMVQAKRNEAIKRLTDGRVNVLIATDVAARGIDIPDV 317

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
            HVFNFD+P  A+ Y+HRIGRTGRAG+ G A +LV   D   +  I + IE+ +     D
Sbjct: 318 SHVFNFDMPRTADTYLHRIGRTGRAGKKGTAISLVEAHDHLLLGKIGRYIEEPLKARVID 377

Query: 375 L--SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKES 425
               +   P EK+               +K      R K       +I  +  
Sbjct: 378 ELRPTTRAPSEKLTGKPSKKVLAKRAQKKKDEKEKPRVKKRHRDTKNIGKRRK 430


>gi|121704012|ref|XP_001270270.1| ATP dependent RNA helicase (Sub2), putative [Aspergillus clavatus
           NRRL 1]
 gi|143586067|sp|A1CMQ7|SUB2_ASPCL RecName: Full=ATP-dependent RNA helicase sub2
 gi|119398414|gb|EAW08844.1| ATP dependent RNA helicase (Sub2), putative [Aspergillus clavatus
           NRRL 1]
          Length = 441

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 150/373 (40%), Gaps = 5/373 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++ A+ D G+  P+ +Q   IP  +   DV   A++G GKTA FVL  L  
Sbjct: 60  FRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQ 119

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                G   V +         +        +         +           E  + K  
Sbjct: 120 LEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEVLSNKES 179

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+           ++   L N    ++ +    +  +     +Q I    P  +Q 
Sbjct: 180 YPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQV 239

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ E++ + + F++NP  + V+  +         +    ++  K   L +    
Sbjct: 240 MMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSESEKNRKLNEL--L 297

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF         L   L +  F   A+H  + Q  R+K    FKE   ++ V
Sbjct: 298 DSLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICV 357

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDA 359
           A+D+  RG+DI  +    N+D+P  A++Y+HR+GR GR G  G + + V+ ++D K +  
Sbjct: 358 ATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSNEDDEKVLKE 417

Query: 360 IEKLIEKKVDWLN 372
           IEK  E  +    
Sbjct: 418 IEKRFEVALPEYP 430


>gi|229086855|ref|ZP_04219016.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-44]
 gi|228696459|gb|EEL49283.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-44]
          Length = 436

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 204/378 (53%), Gaps = 12/378 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ AV D  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L 
Sbjct: 5   TFTQYDFQPFLIDAVRDLRFSEPTEIQKKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLN 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNF----EKYGKNYNLTVALLIGGIPFEAQNK 117
            +   R  V++    I  PTRELA Q+        +   +   +T   LIGG   +   +
Sbjct: 65  RINANREEVQLV---ITAPTRELAQQIYQEIVKLTKFCAEEQMITARCLIGGTDKQRSIE 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL++   V++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P  
Sbjct: 122 KLKKQPHVVVGTPGRIKDLVEEQALFVHKATTIIVDEADLMLDMGFIQDVDKIAARMPKN 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +     +    L +
Sbjct: 182 LQMLVFSATIPQKLKPFMKKYMENPEHIHINPKQVAAGNIEHYLVPSRH---RNKIELVK 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q      I+F N KK    + + L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 239 NMLLQFKPYLAIVFTNTKKMADEVANGLTERGLKVGRIHGDLSPRDRKKMMKQVRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + I
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGYSGIAVTIYDPANEEAI 358

Query: 358 DAIEKLIEKKVDWLNGDL 375
           D++EK  ++ + + + DL
Sbjct: 359 DSLEK--QRNITFKHVDL 374


>gi|221108888|ref|XP_002166443.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 789

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 124/388 (31%), Positives = 193/388 (49%), Gaps = 28/388 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + D  L   ++  +L  GY  PTPIQ + IP+ L   D+ GIA+TG+GKTA+FV+P+L  
Sbjct: 363 WRDSSLPNDILDVILSLGYTDPTPIQRQAIPIGLMNRDIIGIAETGSGKTAAFVIPLLVW 422

Query: 63  L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           +      ++       P  +IL PTRELA Q+ +   K+ K   +    +IGG+  E Q 
Sbjct: 423 ITGLPESDRQSVSDNGPFAIILAPTRELAQQIEEETIKFAKKLGIRTVAVIGGLSREDQG 482

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
            +L  G +++I TPGR++D      L+++    +V+DEADRM+DMGF P +Q I   +P 
Sbjct: 483 FQLRLGCEIVIATPGRLIDVLENRYLVLSQCSYVVMDEADRMIDMGFEPDVQKILEHLPV 542

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA---------------------- 214
           T             +   + +     ++  + T +                         
Sbjct: 543 TNIKPDTEEAEDVNVIAKNYSSKDKYRQTVMFTATMPPVVERLARTYLRRPAIVTIGSAG 602

Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
           + ++      Y   + +       + S       ++F NQKK    L  SLEKQGFS   
Sbjct: 603 KPVDRVEQKVYMLSAAQKKKKLLEILSNKLDPPVLVFVNQKKGADVLAKSLEKQGFSATT 662

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           +HG   Q  R   L++ KEG   ++VA+D+A RG+DI DV  V N+D+    E+Y HRIG
Sbjct: 663 LHGGKGQEQREFALNSLKEGNKDILVATDVAGRGIDIKDVSMVINYDMAKNIESYTHRIG 722

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           RTGRAG+ G A T + +ED +    +++
Sbjct: 723 RTGRAGKSGIAVTFLTQEDSEVFYDLKQ 750


>gi|126644819|ref|XP_001388126.1| U5 snRNP 100 kD protein [Cryptosporidium parvum Iowa II]
 gi|126117354|gb|EAZ51454.1| U5 snRNP 100 kD protein, putative [Cryptosporidium parvum Iowa II]
 gi|323509541|dbj|BAJ77663.1| cgd3_3690 [Cryptosporidium parvum]
          Length = 529

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 117/391 (29%), Positives = 204/391 (52%), Gaps = 18/391 (4%)

Query: 2   DFAD---LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           ++ D   L +  +++  +   GY KPTPIQ++ IP+ L+  D+ GIA+TG+GKT +F++P
Sbjct: 143 NWKDCHVLEIQTELIRNI---GYEKPTPIQMQCIPIGLKLRDMIGIAETGSGKTIAFLIP 199

Query: 59  MLTILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYN----LTVALLIGG 109
           +++ +              P  LIL P RELA Q+ D  +K     +    +    ++GG
Sbjct: 200 LISYVGNKPILDYKTSQEGPYGLILAPARELALQIEDEAQKLLNKTHELKRIRTLSIVGG 259

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
              + Q   L +G +++I TPGR+ D   +   ++     +++DEADRM+D+GF   +  
Sbjct: 260 RNIDQQAFSLRKGVEIIIATPGRMQDCLEKTLTVLVQCSYVILDEADRMIDLGFQDSLNF 319

Query: 170 ITSLVPF--TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           I   +P    R T +FSATM  EL+ +++ +L +P  + +    +  ++I+         
Sbjct: 320 ILDQIPPEIQRTTHMFSATMQKELENIAKRYLNSPINVTIGDIGAGKKSIQQILNFISEN 379

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             K   +       +  +   I+F NQKK V  +C  +   GF   ++HG   Q  R   
Sbjct: 380 KKKSTLINTL-NNKELAVPPIIVFLNQKKMVDIVCREIVSHGFKATSLHGGKMQEVRENS 438

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L+ FK G   ++V++D+A RG+DI ++  V N+D P   + Y HRIGRTGRAG++G A +
Sbjct: 439 LNLFKSGVFDILVSTDVAGRGIDINNINLVINYDFPKSIDTYTHRIGRTGRAGKNGIAIS 498

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            +  ED      ++K++    + +  +L + 
Sbjct: 499 FITPEDSGLFPELKKILLTSNNPIPNELKNF 529


>gi|326790482|ref|YP_004308303.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
 gi|326541246|gb|ADZ83105.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
           5427]
          Length = 470

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 128/449 (28%), Positives = 224/449 (49%), Gaps = 25/449 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+ L ++  ++  +   G   P PIQ  T+P  L+ HDV   + TG+GKT +FVLP+  
Sbjct: 4   TFSALKINHSLIEGLKHQGITSPMPIQELTLPAFLEGHDVIIESHTGSGKTLAFVLPLFE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKKL 119
            ++  +  ++     IL PT EL  Q+ +      KN   N+    +IG +  + Q KKL
Sbjct: 64  KIDLTKREMQAI---ILAPTHELVMQIHEQITVLAKNSSLNIQSCPIIGEVNIDHQIKKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +++ T GRILD   + K+  + I+ +++DEAD +LD      I+ +  L+P  RQ
Sbjct: 121 RDKPQIIVGTAGRILDLMTKKKITASTIQTVILDEADHLLDQNQANTIKKMLYLLPKDRQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             L SA+M+    +  + F+ +P  +     +     I+H  + +     ++   + + L
Sbjct: 181 ICLCSASMSPTAIEAVKTFMTHPVIVRTAEQTVLNPRIKHFCLVSEQ---REKFDMLRKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +  +IF +Q  +   L   L+  G SV  I G + + +R   L+ F+ G ++L+
Sbjct: 238 LVATHTQRALIFVSQNTDTTTLVEKLKHHGHSVATISGKLTKEARKAALTAFRSGKVKLL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           ++SDL+ARGLD+PD+ HV +FD P  A  Y+HR GR+ R  + G +  L   +D+  I  
Sbjct: 298 ISSDLSARGLDVPDITHVIHFDFPLTAHEYLHRAGRSARGFKEGHSICLATPKDLGAIRI 357

Query: 360 IE----------KLIEKKV-DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
            E          KLI+ +V D   G++ +   P  +    + + ++K N  P+   GF+ 
Sbjct: 358 FERDFNITIIPIKLIKGQVRDLKTGEIVASCDPSHQKPSLEKSESKKRNKYPK---GFNS 414

Query: 409 RKKNYSSQKSHIP---LKESEKISKLQQD 434
            KK  S+  + +P   LK  +K +  ++D
Sbjct: 415 EKKKNSTASTPVPEAKLKSHKKNTSFKED 443


>gi|207343942|gb|EDZ71243.1| YJL033Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 675

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 120/459 (26%), Positives = 205/459 (44%), Gaps = 30/459 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F DL +S   +  + ++ ++K T IQ  +IP+ LQ HDV   A+TG+GKT +F++P +  
Sbjct: 43  FKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEK 102

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  +          LI+ PTRELA Q+ +   K G + + +  L+IGG   + + +++ R
Sbjct: 103 LYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISR 162

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +        L  +N+++LV+DEADR LDMGF   +  I S +  +RQTL
Sbjct: 163 INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSRQTL 222

Query: 182 LFSATMTDELQKV-----SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           LFSAT +  +  +     ++        +   + +  A T E                + 
Sbjct: 223 LFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLDIL 282

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEG 294
                       I+F +  K V  +  +  K    +    +HG   QR+R + L  F   
Sbjct: 283 FSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDKFNRA 342

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
               + A+D+ ARG+D P V  V   D P   + YIHR+GR  R G+ GK+  ++  ++ 
Sbjct: 343 QQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQEQ 402

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +    +++L  +K++   G L+                 +K+     +S  F   +  Y 
Sbjct: 403 EAF--LKRLNARKIE--PGKLN------------IKQSKKKSIKPQLQSLLFKDPELKYL 446

Query: 415 SQKSHIPLKESEKISKLQQDIQ------ENDADSLGFRG 447
            QK+ I    S  + K +Q  +      E  A SLG  G
Sbjct: 447 GQKAFISYVRSIYVQKDKQVFKFDELPTEEFAYSLGLPG 485


>gi|74219920|dbj|BAE40541.1| unnamed protein product [Mus musculus]
          Length = 406

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 199/378 (52%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 33  SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E      +    L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 93  QIELDLKASQA---LVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 149

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q 
Sbjct: 150 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 209

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L      
Sbjct: 210 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL--Y 267

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 268 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 327

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V +ED + +  I
Sbjct: 328 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 387

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      ++ +  +++ L
Sbjct: 388 ETFYNTSIEEMPLNVADL 405


>gi|26991630|ref|NP_747055.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida KT2440]
 gi|24986724|gb|AAN70519.1|AE016694_2 ATP-dependent RNA helicase DbpA [Pseudomonas putida KT2440]
          Length = 461

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 206/369 (55%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L LS  ++  +   GY   TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 8   FATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNP 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     R    + L+L PTRELA QVA    +  +  +    L +  G+    Q   LE 
Sbjct: 68  I---NPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEH 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H ++G L+++ +  LV+DEADRMLDMGF   I +I    P  RQTL
Sbjct: 125 GAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++ +F++NP++++V +  +  +  +        Q  +    +      
Sbjct: 185 LFSATYPAGIKQLAADFMRNPQQVKVESLHTDNQIEQRFIEIDPQQRLEAVTRVL----G 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ + FC  K+   ++   L  +G    A+HG+++QR R ++L+ F   +  ++VA
Sbjct: 241 HYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   AE ++HR+GRTGRAG  G A +LVA  +     AIE
Sbjct: 301 TDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIE 360

Query: 362 KLIEKKVDW 370
            L    + W
Sbjct: 361 ALQNSPLRW 369


>gi|39951881|ref|XP_363657.1| hypothetical protein MGG_01583 [Magnaporthe oryzae 70-15]
 gi|152032663|sp|A4RK80|PRP28_MAGO7 RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|145020572|gb|EDK04701.1| hypothetical protein MGG_01583 [Magnaporthe oryzae 70-15]
          Length = 674

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 125/419 (29%), Positives = 192/419 (45%), Gaps = 36/419 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  L   +   +   GY +PTP+Q   IP+ LQ  D+ GI++TG+GKTA+FVLPML+ 
Sbjct: 259 WEESNLPHVLKDTIKQVGYTEPTPVQRAAIPIALQCRDLIGISKTGSGKTAAFVLPMLSY 318

Query: 63  LE-----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
           +E         +   P  LIL PTRELA Q+     K+      T V L+      E   
Sbjct: 319 IEPLPPLNEVTKTEGPYALILAPTRELATQIQAEVIKFATRMGFTVVCLIGNKRTIEEDA 378

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GA++++ TPGR++D   R  L+++    +V+DEADRM+D GF   I  I + +P 
Sbjct: 379 FALRNGAEIIVATPGRLVDCLERHLLVLSQCSYVVLDEADRMVDGGFEDSIHKILAALPP 438

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH----------------- 219
           +             +           ++  + + +                         
Sbjct: 439 SNGKPDDRDAEDPNIMSKFLTPNLRYRQTVMYSATMPPSVERIAKNYLKHPAMVTIGTIG 498

Query: 220 -------CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
                            ++   L+ +L +  T K  I+F N K N   +   L+   FS 
Sbjct: 499 EAVDTVEQQAMWVVSEDERRNKLRAMLNTYGTGKLVIVFVNTKSNCDAVAKDLKSSSFSA 558

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
             +HGN  Q  R   L +F++G   ++VA+D+AARGLDIPDV  V NF++    E Y HR
Sbjct: 559 VTLHGNKTQDQREAALQSFRDGRTNVLVATDVAARGLDIPDVSLVINFNMAGTIEVYTHR 618

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
           IGRTGRAG+ G A T    ED   +  +++++ K        +S + P L+    AQ  
Sbjct: 619 IGRTGRAGKEGMAITFCGPEDHGVLYHLKQIMSK------SQMSKVPPWLKDHPEAQSK 671


>gi|290771182|emb|CAY80746.2| Hca4p [Saccharomyces cerevisiae EC1118]
          Length = 770

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 120/459 (26%), Positives = 205/459 (44%), Gaps = 30/459 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F DL +S   +  + ++ ++K T IQ  +IP+ LQ HDV   A+TG+GKT +F++P +  
Sbjct: 43  FKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEK 102

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  +          LI+ PTRELA Q+ +   K G + + +  L+IGG   + + +++ R
Sbjct: 103 LYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISR 162

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +        L  +N+++LV+DEADR LDMGF   +  I S +  +RQTL
Sbjct: 163 INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSRQTL 222

Query: 182 LFSATMTDELQKV-----SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           LFSAT +  +  +     ++        +   + +  A T E                + 
Sbjct: 223 LFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLDIL 282

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEG 294
                       I+F +  K V  +  +  K    +    +HG   QR+R + L  F   
Sbjct: 283 FSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDKFNRA 342

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
               + A+D+ ARG+D P V  V   D P   + YIHR+GR  R G+ GK+  ++  ++ 
Sbjct: 343 QQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQEQ 402

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +    +++L  +K++   G L+                 +K+     +S  F   +  Y 
Sbjct: 403 EAF--LKRLNARKIE--PGKLNI------------KQSKKKSIKPQLQSLLFKDPELKYL 446

Query: 415 SQKSHIPLKESEKISKLQQDIQ------ENDADSLGFRG 447
            QK+ I    S  + K +Q  +      E  A SLG  G
Sbjct: 447 GQKAFISYVRSIYVQKDKQVFKFDELPTEEFAYSLGLPG 485


>gi|190409466|gb|EDV12731.1| RNA helicase [Saccharomyces cerevisiae RM11-1a]
 gi|256271064|gb|EEU06165.1| Hca4p [Saccharomyces cerevisiae JAY291]
 gi|323337099|gb|EGA78355.1| Hca4p [Saccharomyces cerevisiae Vin13]
          Length = 770

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 120/459 (26%), Positives = 205/459 (44%), Gaps = 30/459 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F DL +S   +  + ++ ++K T IQ  +IP+ LQ HDV   A+TG+GKT +F++P +  
Sbjct: 43  FKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEK 102

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  +          LI+ PTRELA Q+ +   K G + + +  L+IGG   + + +++ R
Sbjct: 103 LYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISR 162

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +        L  +N+++LV+DEADR LDMGF   +  I S +  +RQTL
Sbjct: 163 INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSRQTL 222

Query: 182 LFSATMTDELQKV-----SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           LFSAT +  +  +     ++        +   + +  A T E                + 
Sbjct: 223 LFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLDIL 282

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEG 294
                       I+F +  K V  +  +  K    +    +HG   QR+R + L  F   
Sbjct: 283 FSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDKFNRA 342

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
               + A+D+ ARG+D P V  V   D P   + YIHR+GR  R G+ GK+  ++  ++ 
Sbjct: 343 QQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQEQ 402

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +    +++L  +K++   G L+                 +K+     +S  F   +  Y 
Sbjct: 403 EAF--LKRLNARKIE--PGKLNI------------KQSKKKSIKPQLQSLLFKDPELKYL 446

Query: 415 SQKSHIPLKESEKISKLQQDIQ------ENDADSLGFRG 447
            QK+ I    S  + K +Q  +      E  A SLG  G
Sbjct: 447 GQKAFISYVRSIYVQKDKQVFKFDELPTEEFAYSLGLPG 485


>gi|119191696|ref|XP_001246454.1| hypothetical protein CIMG_00225 [Coccidioides immitis RS]
 gi|118575169|sp|Q1EB38|DBP10_COCIM RecName: Full=ATP-dependent RNA helicase DBP10
          Length = 927

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 130/404 (32%), Positives = 210/404 (51%), Gaps = 39/404 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPLVL   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 83  FQAMGLNANLLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEK 142

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +V   R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 143 LKSHSTKVGS-RGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMAGN 201

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 202 PDIIIATPGRFLHLKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPQSRQTLL 261

Query: 183 FSATMTDELQKVSE--------------------------------------NFLQNPKR 204
           FSAT+   L + +                                       + L +  +
Sbjct: 262 FSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQSVFFTVKSAEKEGALLHILHDVIK 321

Query: 205 IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHS 264
           +      +     E       ++  K+        Q   T  + IIF   K +V  +   
Sbjct: 322 VPTGETEAGKHAREQAISGKSSKKRKRSEQNNPNPQESPTEHSTIIFVATKHHVDYIASL 381

Query: 265 LEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPN 324
           L + GF+V   +G++DQ +R   +SNF+ G   ++V +D+AARG+DIP + +V N+D P+
Sbjct: 382 LRESGFAVSYAYGSLDQTARKIQVSNFRTGISNILVVTDVAARGIDIPILENVINYDFPS 441

Query: 325 RAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           +A+ ++HR+GRT RAGR G +++LV   D  ++  ++  + +++
Sbjct: 442 QAKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRRL 485


>gi|119177270|ref|XP_001240430.1| conserved hypothetical protein [Coccidioides immitis RS]
 gi|303316075|ref|XP_003068042.1| Eukaryotic translation initiation factor 4A, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|118593421|sp|Q1DQ20|IF4A_COCIM RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|240107718|gb|EER25897.1| Eukaryotic translation initiation factor 4A, putative [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 398

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L  +++  V   G+ +P+ IQ + I  V++  DV   AQ+GTGKTA+F +  L 
Sbjct: 26  SFDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++  + LIL PTRELA Q+       G   ++     IGG       K L  
Sbjct: 86  KVDTN---LKACQALILAPTRELAQQIQKVVVAIGDFMSVECHACIGGTNVREDIKALND 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  + +++ V+DEAD ML  GF   I +I   +P + Q +
Sbjct: 143 GPQVVVGTPGRVHDMIQRRVLKTDQMKMFVLDEADEMLSRGFTEQIYDIFQFLPQSTQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++  V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 203 LLSATMPQDVLDVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG ++Q  R  I+  F+ G+ ++++A
Sbjct: 261 TVTITQAVIFCNTRRKVDWLTDKLIARDFTVSAMHGEMEQNQRDVIMKEFRSGSSRVLIA 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 321 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 380

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  +++ L
Sbjct: 381 QFYSTQIEEMPMNVADL 397


>gi|322827585|gb|EFZ31702.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 948

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 125/453 (27%), Positives = 200/453 (44%), Gaps = 36/453 (7%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--E 64
           GL   V+  +   G+ +P  +Q    P ++   D+   A+TG+GKT +++LP++     +
Sbjct: 312 GLPDSVLDLLAREGFEQPFAVQSLGSPALMSGRDLLITAKTGSGKTLAYLLPLIRHCVGQ 371

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           +   +   P  LI  PTRELAAQ+A   EK      L      G  P     +    G +
Sbjct: 372 EPCGKGEGPIGLIFVPTRELAAQIAQLAEKLCVAAKLRFVSSYGLTPLADNIRHCRAGCE 431

Query: 125 VLICTPGRILDHFNRG---KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           V++CTPGR+LD         + +     +VIDEADRM D GF+ +++     +   RQ  
Sbjct: 432 VMVCTPGRLLDLLTVNGGAVISLRRTSFVVIDEADRMFDSGFMEHVEAFLKNIRPDRQLA 491

Query: 182 LFSATMTDELQKVSENFLQNPKR-----------IEVNTPSSTAETIEHCFVATYAQYSK 230
           L SATM  EL+KV    +Q+P                       E +     A   +  K
Sbjct: 492 LISATMPKELKKVIMRHMQDPVEVTVGGKPTPASNVEQRFFFFDEEVYEVEEANRTEDKK 551

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVV---NLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
              LLQ L     T ++ II   Q+K          S       +  ++  +D   R   
Sbjct: 552 FLKLLQILSDEGGTGQHLIIIFAQRKEECDELFARLSACGYQKRIAVLYSGMDPLDREFA 611

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L +F  G   +++A+ +A RGLDIP +  V N+ +P+  E Y+HRIGRTGRAG+ GKA +
Sbjct: 612 LEHFAPGNQFILIATGVAERGLDIPYLELVINYTLPDHYEAYVHRIGRTGRAGKKGKAVS 671

Query: 348 LV--AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
                K+D   ++  E L   +             P E  + A     ++   I + +TG
Sbjct: 672 FFMRGKDDDLSVELCEGLERAQQQV----------PEELYERAAKLREKRKEGIVRHNTG 721

Query: 406 FDR-----RKKNYSSQKSHIPLKESEKISKLQQ 433
           F R     +K  ++ +      K + + + L++
Sbjct: 722 FYRGYMKAKKLRFTDRGQEEQFKAAARAAGLEE 754


>gi|241763727|ref|ZP_04761775.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
 gi|241367032|gb|EER61417.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
          Length = 612

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 130/429 (30%), Positives = 204/429 (47%), Gaps = 50/429 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-----QRH--DVCGIAQTGTGKTASF 55
           F +LGL+P++V AV D GY +PT +Q+K IPL +      +   D+   +QTG+GKTA+F
Sbjct: 42  FIELGLAPELVQAVADLGYTQPTSVQLKAIPLAMGAGDDAKRFIDLMVSSQTGSGKTAAF 101

Query: 56  VLPMLTILEKGR---------------------------------------ARVRMPRTL 76
           +LP+L  L + +                                        +   P  L
Sbjct: 102 LLPVLHTLIQQQAEAEAEERAAFERAVAEAAVRGEPAPKRAKRKDPTNARNFKAATPGAL 161

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           IL PTRELA QVA +     K+        + G           + A++++ TPGR+LD 
Sbjct: 162 ILCPTRELAQQVAHDAIDLVKHCRGLRVANVVGGMPYQLQIAKLQNANLVVATPGRLLDL 221

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
               ++ ++ ++ LV+DEADRMLD+GF   +  +  L    +QT++FSAT    +Q+++ 
Sbjct: 222 QRSMQIKLDKVQFLVVDEADRMLDLGFSDDLAELNQLTSQRKQTMMFSATFAPRIQQLAM 281

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--QLLQSQDTMKNGIIFCNQ 254
             + +           + +                    +         T+   I+F + 
Sbjct: 282 RVMHDGGASVQKVTIDSPQEKHANIKQMLYWADNAQHKRKLLDHWLRDTTINQAIVFAST 341

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           +     L + L++ GFS  A+HG + Q  R + L   + G +Q++VA+D+AARG+D+P +
Sbjct: 342 QVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRAGQVQILVATDVAARGIDVPTI 401

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLN 372
            HVFNF +P +AE+Y HRIGRTGRAGR G A T     D + I  IE    +  K D + 
Sbjct: 402 THVFNFGLPMKAEDYTHRIGRTGRAGRDGLAITFAEFRDRRKIYDIESYSRQQFKADVVP 461

Query: 373 GDLSSLNPP 381
           G   S   P
Sbjct: 462 GMEPSQRAP 470


>gi|6322427|ref|NP_012501.1| Hca4p [Saccharomyces cerevisiae S288c]
 gi|1170186|sp|P20448|DBP4_YEAST RecName: Full=ATP-dependent RNA helicase HCA4; AltName: Full=DEAD
           box protein 4; AltName: Full=Helicase CA4; AltName:
           Full=Helicase UF1
 gi|1008155|emb|CAA89324.1| HCA4 [Saccharomyces cerevisiae]
 gi|285812868|tpg|DAA08766.1| TPA: Hca4p [Saccharomyces cerevisiae S288c]
          Length = 770

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 120/459 (26%), Positives = 205/459 (44%), Gaps = 30/459 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F DL +S   +  + ++ ++K T IQ  +IP+ LQ HDV   A+TG+GKT +F++P +  
Sbjct: 43  FKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEK 102

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  +          LI+ PTRELA Q+ +   K G + + +  L+IGG   + + +++ R
Sbjct: 103 LYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISR 162

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +        L  +N+++LV+DEADR LDMGF   +  I S +  +RQTL
Sbjct: 163 INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSRQTL 222

Query: 182 LFSATMTDELQKV-----SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           LFSAT +  +  +     ++        +   + +  A T E                + 
Sbjct: 223 LFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLDIL 282

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEG 294
                       I+F +  K V  +  +  K    +    +HG   QR+R + L  F   
Sbjct: 283 FSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDKFNRA 342

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
               + A+D+ ARG+D P V  V   D P   + YIHR+GR  R G+ GK+  ++  ++ 
Sbjct: 343 QQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQEQ 402

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +    +++L  +K++   G L+                 +K+     +S  F   +  Y 
Sbjct: 403 EAF--LKRLNARKIE--PGKLNI------------KQSKKKSIKPQLQSLLFKDPELKYL 446

Query: 415 SQKSHIPLKESEKISKLQQDIQ------ENDADSLGFRG 447
            QK+ I    S  + K +Q  +      E  A SLG  G
Sbjct: 447 GQKAFISYVRSIYVQKDKQVFKFDELPTEEFAYSLGLPG 485


>gi|302562189|ref|ZP_07314531.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
 gi|302479807|gb|EFL42900.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
          Length = 451

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 139/450 (30%), Positives = 214/450 (47%), Gaps = 11/450 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L L  +V+  +   G  +P PIQ  T+P  L+  DV G  +TG+GKT +F LP+LT
Sbjct: 9   SFAGLRLPAEVLRTLSALGVREPFPIQAATLPDSLEGRDVLGRGRTGSGKTLAFGLPLLT 68

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                RA  + P  L+L PTRELA QV  +   Y +   L +  ++GG+    Q   L +
Sbjct: 69  RTAGRRAAPKQPLALVLVPTRELAQQVTQDLAPYAEALRLRMTTVVGGLSIGRQTAALRQ 128

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+V++ TPGR+ D   R    + ++ I V+DEAD+M DMGF+P + +    V    Q +
Sbjct: 129 GAEVVVATPGRLHDLIERNACRLGSVRITVLDEADQMCDMGFLPQVTDALDQVHPDGQRM 188

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ K+   +L +P    V+ P+    T+EH  +  +            + + 
Sbjct: 189 LFSATLDRDVDKLVGRYLHDPVVHSVDPPAGAVTTMEHHVLVVHGPDR-----YAVVTEI 243

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F + K  V  L   L   G    A+HG   Q  R + L+ FK+G I ++VA
Sbjct: 244 AARDGRVLLFLDTKHAVDQLTRHLRASGVPAGALHGGKSQPQRTRTLAQFKDGGITVLVA 303

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           + +AARGL I D+  V N D P   ++Y+HR GRT RAG  G   TLV     +    + 
Sbjct: 304 TGVAARGLHIDDLDLVVNVDPPADPKDYVHRAGRTARAGASGSVVTLVTAGARRETSRM- 362

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ----KSTGFDRRKKNYSSQK 417
            + E  V+     + S    L +I  A+       +  P     K+T    R    S   
Sbjct: 363 -MAEAGVEAAVTKVRSGEAELSRITGARTPSGTPLDGGPAAPRPKNTNAPFRGLGTSKGA 421

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRG 447
           S     +S K  + ++  +   A  +   G
Sbjct: 422 SRGTGDKSRKAGEARKLAEARKAALVRRNG 451


>gi|51013687|gb|AAT93137.1| YJL033W [Saccharomyces cerevisiae]
          Length = 770

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 120/459 (26%), Positives = 205/459 (44%), Gaps = 30/459 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F DL +S   +  + ++ ++K T IQ  +IP+ LQ HDV   A+TG+GKT +F++P +  
Sbjct: 43  FKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEK 102

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  +          LI+ PTRELA Q+ +   K G + + +  L+IGG   + + +++ R
Sbjct: 103 LYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISR 162

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +        L  +N+++LV+DEADR LDMGF   +  I S +  +RQTL
Sbjct: 163 INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSRQTL 222

Query: 182 LFSATMTDELQKV-----SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           LFSAT +  +  +     ++        +   + +  A T E                + 
Sbjct: 223 LFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLDIL 282

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEG 294
                       I+F +  K V  +  +  K    +    +HG   QR+R + L  F   
Sbjct: 283 FSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDKFNRA 342

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
               + A+D+ ARG+D P V  V   D P   + YIHR+GR  R G+ GK+  ++  ++ 
Sbjct: 343 QQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQEQ 402

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +    +++L  +K++   G L+                 +K+     +S  F   +  Y 
Sbjct: 403 EAF--LKRLNARKIE--PGKLNI------------KQSKKKSIKPQLQSLLFKDPELKYL 446

Query: 415 SQKSHIPLKESEKISKLQQDIQ------ENDADSLGFRG 447
            QK+ I    S  + K +Q  +      E  A SLG  G
Sbjct: 447 GQKAFISYVRSIYVQKDKQVFKFDELPTEEFAYSLGLPG 485


>gi|309360296|emb|CAP31774.2| CBR-GLH-1 protein [Caenorhabditis briggsae AF16]
          Length = 817

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 115/369 (31%), Positives = 178/369 (48%), Gaps = 21/369 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L+  ++  V +AGY K TPIQ   +PL+   HD+   AQTG+GKTA+F+LP+++
Sbjct: 397 TFEDAKLTETMLKNVRNAGYNKTTPIQQFALPLIRDGHDIMACAQTGSGKTAAFLLPIMS 456

Query: 62  ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            L               PR +IL PTRELA Q+ +   K+     + +  + GG+     
Sbjct: 457 RLTDESDLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYN 516

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD-MGFIPYIQNITSLV 174
             ++ERGA +++ T GRI      G + ++     V+DEADRM+D MGF   I+ I    
Sbjct: 517 KSQIERGATIVVGTVGRIKHFCEEGTIKLDKCRYFVLDEADRMIDAMGFGDDIRTIVGYE 576

Query: 175 PFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
              ++      +FSAT  D +Q+ +  FL+    +        A               K
Sbjct: 577 GMPQKENRQTLMFSATFPDSVQEAAREFLRQDYSMITIDKIGAANKCVLQEFEQCEMCDK 636

Query: 231 KCA----------LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
           K                +  +    K  I+F  ++     L   L         IHG  +
Sbjct: 637 KDKLLEMLGVDLESYTTVTNADVYTKKTIVFVARRALADTLAAVLSTAQIPAITIHGARE 696

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           QR R + L +F+ G+  +++A+ +A RGLDI  V HV N+D+P+  ++YIHRIGRTGR G
Sbjct: 697 QRERSEALRHFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVG 756

Query: 341 RHGKAFTLV 349
             G+A + +
Sbjct: 757 NSGRATSFI 765


>gi|254775428|ref|ZP_05216944.1| ATP-dependent RNA helicase [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 362

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 118/361 (32%), Positives = 188/361 (52%), Gaps = 4/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+  ++V A+   G   P PIQ +T+P  L   DV G  +TG+GKT +F +P++ 
Sbjct: 6   TFADLGVPARIVDALTARGITSPFPIQAETLPDTLAGRDVLGRGKTGSGKTLAFSIPLVG 65

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L  G  R   P  L+L PTRELA Q+    E       L V+ + GG+    Q   L+ 
Sbjct: 66  RLSTGNRRPARPTGLVLAPTRELATQITATLEPLAAAAGLRVSTIFGGVSQHRQVTALKA 125

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++  PGR+ D   +  + +  + + VIDEAD M D+GF+P +  I +  P   Q L
Sbjct: 126 GVDIVVACPGRLEDLMRQRLITLEAVRVTVIDEADHMADLGFLPGVTRILAATPNDGQRL 185

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ + + K+   FL++     V+  +S    + H      +  +K     + + + 
Sbjct: 186 LFSATLDNGVDKLVTRFLRDAVLHSVDEANSPVSEMTHHVFHVDSAQAK----KELVHRL 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K     L   L + G     +HGN+ Q +R + L+ F  G+ +++VA
Sbjct: 242 ASGTGRRILFLRTKHQARKLARQLTESGVPSVDLHGNLSQPARERNLAMFAAGSARVLVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ + +V  V + D P+  ++Y+HR GRT RAG  G   T+V  E  +H  A+ 
Sbjct: 302 TDIAARGVHVDEVELVVHIDPPSEHKSYLHRSGRTARAGSAGDVVTVVLPEQREHTRALM 361

Query: 362 K 362
           +
Sbjct: 362 R 362


>gi|242043730|ref|XP_002459736.1| hypothetical protein SORBIDRAFT_02g009590 [Sorghum bicolor]
 gi|241923113|gb|EER96257.1| hypothetical protein SORBIDRAFT_02g009590 [Sorghum bicolor]
          Length = 512

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 126/391 (32%), Positives = 191/391 (48%), Gaps = 8/391 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+   L  +V+       + +P+PIQ    P +L   D  GIA TG+GKT +F +P L 
Sbjct: 95  SFSAAELPSQVLDCCSA--FARPSPIQAHAWPFLLDGRDFIGIAATGSGKTIAFGVPALM 152

Query: 62  ILEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            + K      +    PR L+L PTRELA Q+AD   + G    +    L GG   E Q  
Sbjct: 153 HIRKKVGGKAVKKAVPRCLVLSPTRELAQQIADVLSEAGAPCGIKSVCLYGGTKKEPQIS 212

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L+ G D++I TPGR+ D    G   +N +  +V+DEADRMLDMGF P ++ I S     
Sbjct: 213 ALKSGVDIVIGTPGRMKDLIEMGVCRLNEVSFVVLDEADRMLDMGFEPEVRAILSQTSSV 272

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRI--EVNTPSSTAETIEHCFVATYAQYSKKCALL 235
           RQ ++FSAT    + K+++ F+          +   +    +         +      L 
Sbjct: 273 RQMVMFSATWPLAVHKLAQEFMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRTRDSRLLA 332

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
                 Q      ++F   KK    +   L+++G+   ++HG+  Q  R K LS FKEG 
Sbjct: 333 LLDKYHQAQSNRVLVFVLYKKEAARVETMLQRRGWKAVSVHGDKAQHDRTKALSLFKEGK 392

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             LM+A+D+A+RGLDIPDV  V N+  P   E+Y+HRIGRTGRAG+ G A T   + +  
Sbjct: 393 CPLMIATDVASRGLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTFFTQANKA 452

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
               +  ++ +    +   L      ++K +
Sbjct: 453 LAGELVNVLREADQVVPPALMKFGTHVKKKE 483


>gi|254389955|ref|ZP_05005177.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197703664|gb|EDY49476.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 501

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 141/427 (33%), Positives = 214/427 (50%), Gaps = 6/427 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L
Sbjct: 78  ITFADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTL 137

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +GR   + PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LE
Sbjct: 138 ARLAQGRTEKKKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALE 197

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+ D  NRG   + N+E+ V+DEAD+M D+GF+P +  +   VP   Q 
Sbjct: 198 RGVDILVATPGRLRDIINRGACSLENVEVAVLDEADQMSDLGFLPEVTELLDQVPGGGQR 257

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM +E+  + + +L NP   EV++      T+ H  +       K          
Sbjct: 258 MLFSATMENEISTLVKRYLTNPVSHEVDSAQGNVTTMTHHVLVV-----KPKDKAPVTAA 312

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   +     +   L + G    A+HG + Q +R + L++FK+G +  +V
Sbjct: 313 IAARKGRTIIFVRTQLGADRIAEQLREAGVKADALHGGMTQGARTRTLADFKDGYVNALV 372

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI-DA 359
           A+D+AARG+ +  +  V N D     ++Y+HR GRT RAG+ G   +L      + I   
Sbjct: 373 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGTVVSLSLPHQRRQIFRL 432

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E    +    + G   + +P + +I  A+     + +     +   +R   + + Q   
Sbjct: 433 MEDAGVEASRHIVGGAGAFDPEVAEITGARSLTEVQADSANNAAKQAEREVADLTRQLER 492

Query: 420 IPLKESE 426
           I  + +E
Sbjct: 493 IQRRAAE 499


>gi|195155470|ref|XP_002018627.1| GL25900 [Drosophila persimilis]
 gi|194114780|gb|EDW36823.1| GL25900 [Drosophila persimilis]
          Length = 403

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 94/394 (23%), Positives = 164/394 (41%), Gaps = 35/394 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   D+   A++G GKTA FVL  L  
Sbjct: 43  FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 102

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE           +                               G    + +       
Sbjct: 103 LEPADNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGLAIQKDEETLKSGT 162

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM-GFIPYIQNITSLVPFTRQTL 181
             +++ TPGRIL      KL + +++  V+DE D+ML+       +Q I    P  +Q +
Sbjct: 163 PHIVVGTPGRILALIRNKKLNLKHLKHFVLDECDKMLEQLDMRRDVQEIFRSSPHGKQVM 222

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT++ +++ V + F+Q+P  + V+  +               +  K   L + L   
Sbjct: 223 MFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFELLDV- 281

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                                     Q F    IH  + Q  R+     FK+   +++VA
Sbjct: 282 ----------------------LEFNQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVA 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAI 360
           ++L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T V+ + D K ++ +
Sbjct: 320 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDDNDAKILNEV 379

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394
           +   +  +  L           E+ID++ +   R
Sbjct: 380 QDRFDVNISELP----------EEIDLSTYIEGR 403


>gi|182439289|ref|YP_001827008.1| putative DEAD-box RNA helicase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178467805|dbj|BAG22325.1| putative DEAD-box RNA helicase [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 537

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 123/358 (34%), Positives = 185/358 (51%), Gaps = 4/358 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL + P ++  +   G  +P PIQ  T+P  L   D+ G  +TG+GKT +F L +L  
Sbjct: 78  FADLDMPPGLLKTLAAQGVTEPFPIQGATLPNSLAGRDILGRGRTGSGKTLAFGLALLAR 137

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               R   R P  ++L PTRELA QV D    Y    NL +A ++GG+    Q+  L RG
Sbjct: 138 TAGRRGEPRAPLAMVLVPTRELAQQVTDALTPYATAVNLRLATVVGGMSITKQSATLRRG 197

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+VL+ TPGR+ D   RG   ++ + I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 198 AEVLVATPGRLKDLIERGDCRLDEVSITVLDEADQMADMGFMPQVVALLKQVEADGQRML 257

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++ + FL +P    V+  +    T+EH  +    +  KK    +      
Sbjct: 258 FSATLDKNIDRLVKMFLTDPVVHSVDPSAGAVTTMEHHVLHVLDETDKKAVATK----IA 313

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F + K+        L   G    A+HG   Q  R + L  FK G +  +VA+
Sbjct: 314 AREGRVIMFVDTKRAADRFAKRLLASGVRAAALHGGRSQPQRNRTLDQFKNGQVTALVAT 373

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++AARG+ + D+  V N D P   ++Y+HR GRT RAG  G   TLV  E+ + +  +
Sbjct: 374 NVAARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPEEKREMTRL 431


>gi|159113843|ref|XP_001707147.1| ATP-dependent RNA helicase HAS1, putative [Giardia lamblia ATCC
           50803]
 gi|157435250|gb|EDO79473.1| ATP-dependent RNA helicase HAS1, putative [Giardia lamblia ATCC
           50803]
          Length = 547

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 126/471 (26%), Positives = 214/471 (45%), Gaps = 31/471 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  LSP ++ AV   G+   T IQ  +IP++L   ++   A TG+GK+ +F+LP + +
Sbjct: 31  FSETSLSPFLLEAVDAMGHKNMTRIQEASIPVILSGRNMTAKAHTGSGKSLAFLLPAIDL 90

Query: 63  LEKGRARVRMPRTLIL-EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           + K   ++     +I+  PTRELA Q+ +   +     N+TV L IGG   + +   L +
Sbjct: 91  IHKANMKLHHGTGVIVLTPTRELALQLYNVATQLISATNITVGLAIGGTSRQKEANHLCK 150

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEIL-VIDEADRMLDMGFIPYIQNITSLVPFT--R 178
           GA V+I TPGR+ DH N       +   + ++DEAD +L+ GF   ++ I  ++P    R
Sbjct: 151 GASVVIATPGRLCDHLNNTPGFKTDKLFMLILDEADMLLEYGFQQELEAILRMLPGPKLR 210

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q   FSATM+D+  +V    +     I +NT   ++      F   Y     +   L   
Sbjct: 211 QVCFFSATMSDKCLEVPHMEVDKETLIRINTDVKSSAATRAHFEQGYIICPPEQRFLLLY 270

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +      II     ++ V   +   +       +  +   + + ++ +  K    Q 
Sbjct: 271 TFMKRRSDKKIIVFLSSRDSVEFYYEFLRFIGMASILMLDGGMKQKQRMETYNKFCNAQS 330

Query: 299 MV--ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDI 354
            V  A+++AARGLD+P + +V  FD P   E+YIHR GR  R   G+ G     +   + 
Sbjct: 331 GVLLATNVAARGLDLPAIDYVIQFDPPESVESYIHRAGRACRGDTGKKGVGLLFLMSHET 390

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           K I  ++          N  L     P +KI    +  A   N I   +T +  R+K  +
Sbjct: 391 KFISFLKAH--------NVSLFEFEFPADKI---INVQAEMENLI---ATIYYLRRKAQN 436

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGF--------RGNMPAFMLPKN 457
           + +S I    S  + K+  ++ + D + LG         R ++P   L KN
Sbjct: 437 AYRSFISAYASHHLKKV-FNVNKIDLECLGRSFGLTEVPRVDVPGISLYKN 486


>gi|160380619|sp|A6ZPU3|DBP4_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP4; AltName: Full=DEAD
           box protein 4; AltName: Full=Helicase CA4; AltName:
           Full=Helicase UF1
 gi|151945052|gb|EDN63303.1| helicase CA [Saccharomyces cerevisiae YJM789]
          Length = 770

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 120/459 (26%), Positives = 205/459 (44%), Gaps = 30/459 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F DL +S   +  + ++ ++K T IQ  +IP+ LQ HDV   A+TG+GKT +F++P +  
Sbjct: 43  FKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEK 102

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  +          LI+ PTRELA Q+ +   K G + + +  L+IGG   + + +++ R
Sbjct: 103 LYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISR 162

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +        L  +N+++LV+DEADR LDMGF   +  I S +  +RQTL
Sbjct: 163 INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSRQTL 222

Query: 182 LFSATMTDELQKV-----SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           LFSAT +  +  +     ++        +   + +  A T E                + 
Sbjct: 223 LFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLDIL 282

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEG 294
                       I+F +  K V  +  +  K    +    +HG   QR+R + L  F   
Sbjct: 283 FSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDKFNRA 342

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
               + A+D+ ARG+D P V  V   D P   + YIHR+GR  R G+ GK+  ++  ++ 
Sbjct: 343 QQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQEQ 402

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           +    +++L  +K++   G L+                 +K+     +S  F   +  Y 
Sbjct: 403 EAF--LKRLNARKIE--PGKLNI------------KQSKKKSIKPQLQSLLFKDPELKYL 446

Query: 415 SQKSHIPLKESEKISKLQQDIQ------ENDADSLGFRG 447
            QK+ I    S  + K +Q  +      E  A SLG  G
Sbjct: 447 GQKAFISYVRSIYVQKDKQVFKFDELPTEEFAYSLGLPG 485


>gi|308806782|ref|XP_003080702.1| DEAD/DEAH box helicase, putative (ISS) [Ostreococcus tauri]
 gi|116059163|emb|CAL54870.1| DEAD/DEAH box helicase, putative (ISS) [Ostreococcus tauri]
          Length = 1423

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 113/456 (24%), Positives = 191/456 (41%), Gaps = 37/456 (8%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
             F  L LS     A+ +  + + T IQ  T+P  L   DV G  +TG+GKT ++V+P++ 
Sbjct: 703  KFIHLPLSSSTKSALKECKFKEMTAIQRATLPHALCGRDVLGPPKTGSGKTLAYVIPLVE 762

Query: 62   -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +  K   R      +++ PTRELA Q+     + G  ++++  LLIGG     +  ++ 
Sbjct: 763  LLWRKKWGRQDGVGGIVISPTRELAIQIFQCLTRVGARHSMSAGLLIGGKDVSEEANRVN 822

Query: 121  RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            +   ++      +             +++LV+DEADRMLD+GF   +  I   +P  RQT
Sbjct: 823  KMNILVCTPGRLLQHMDETPLFDCVGLQMLVLDEADRMLDLGFAKTLNAIIENLPKKRQT 882

Query: 181  LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LLFSAT T  +            +          E +           +K  A +     
Sbjct: 883  LLFSATQTKSV------------KDLARLGLKDPEYLSVHDGERARDAAKVTANVLWSFI 930

Query: 241  SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQL 298
                    ++F +  K V  +    ++    V    IHG + Q  R  +  NF      +
Sbjct: 931  RTHLNAKTLVFFSSCKQVKFVYEIFKRMRPGVPLQCIHGRLKQARRQGVFYNFCNSKETV 990

Query: 299  MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
            + A+D+A+RGLD P V  V   D P     YIHR+GRT R    GK   ++   +   + 
Sbjct: 991  LFATDVASRGLDFPAVDWVVQADCPEDVATYIHRVGRTARYTAAGKGLLMLTPGESHFVK 1050

Query: 359  AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK--NYSSQ 416
             +E+                  PL+ I I   N  ++++ I     G   +     Y +Q
Sbjct: 1051 ELEQA---------------KVPLKPIKI---NPKKQSSRIQSSMQGLLSKDSDLKYLAQ 1092

Query: 417  KSHIPLKESEKISKLQQ--DIQENDADSLGFRGNMP 450
            ++ +    S  + K ++  D++  D D+  F   +P
Sbjct: 1093 RAVVCYLRSVHLQKNKKVFDVKSIDVDTYSFSMGLP 1128


>gi|71420983|ref|XP_811671.1| RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70876358|gb|EAN89820.1| RNA helicase, putative [Trypanosoma cruzi]
          Length = 553

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 81/369 (21%), Positives = 152/369 (41%), Gaps = 14/369 (3%)

Query: 3   FADL-----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           F++L      +  ++V  + +  +  PTPIQ++ IP ++ + DV   A TG+GKT SF++
Sbjct: 125 FSELVRPPLSVDERLVSNLFERNHRIPTPIQMQAIPCLINKRDVLACAPTGSGKTLSFLI 184

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           PM  IL+         R LI+ PT ELA Q+        K     +         +    
Sbjct: 185 PMFHILKSPNTEAG-VRGLIITPTMELAEQIEREAFFLMKGQRWKL--------VQHGQS 235

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              +   +        +       L      +    +         +  + +I +   F 
Sbjct: 236 TRNKDIFITTPRRVFTMIEKKLIDLGNTQYLVFDEVDRLWDSATDNLQVVDSILTACTFE 295

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + +           +     + +P  I +      +   +      +        +  +
Sbjct: 296 EKVVALFTATLSSKIEGIARTVMSPDPIRIIVSGRVSANKKISQELVFCGNELGKIVEIR 355

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +      +IF    +    L   +  QG ++  ++  ++   R + + NF+ G + 
Sbjct: 356 NLLREGISPPVLIFVQSIERTKELYDEIRCQGLNIAVMNSKMNHEERDETIMNFRLGKLW 415

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ +DL +RG+D  ++G V NFD P   E+YIHRIGR GRAG+ GKA T   ++D K I
Sbjct: 416 VIITTDLLSRGIDFKNIGTVINFDFPITIESYIHRIGRCGRAGKTGKAITFFTEDDKKRI 475

Query: 358 DAIEKLIEK 366
             I ++I++
Sbjct: 476 PPIARVIKE 484


>gi|332523902|ref|ZP_08400154.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332315166|gb|EGJ28151.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 447

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 112/366 (30%), Positives = 178/366 (48%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ +  + +PT +Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDYNFKHYIQKALEEINFKEPTEVQKKLIPIVNSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNK 117
             L++    V+    LI  P+RELA Q+ +  ++   +    + L+             K
Sbjct: 61  EKLDENSRDVQ---VLITAPSRELATQIFEAAKQIANHSQKEIRLVNYVGGTDKLRQIEK 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  +++ TPGRI D    G L ++     V+DEAD  +DMGF+  +  I S +   
Sbjct: 118 LKGSQPHIVVGTPGRIYDLVKSGDLAIHKASTFVVDEADMTMDMGFLDTVDKIASSLSKE 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L+NP   ++ T +  A+ I        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLRNPLIEQIKTETVIADNI---DNWLVSTKGRDKNGHIL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K+   +L   L   G  V  IHG +  R R +I++  K+   +
Sbjct: 235 EILKNIQPYLAMIFVNTKERADDLHSFLVANGLKVAKIHGGVPPRERKRIMNQVKKLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 RELEKM 360


>gi|308505474|ref|XP_003114920.1| CRE-GLH-1 protein [Caenorhabditis remanei]
 gi|308259102|gb|EFP03055.1| CRE-GLH-1 protein [Caenorhabditis remanei]
          Length = 798

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 104/391 (26%), Positives = 159/391 (40%), Gaps = 28/391 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+  LS  +   V  AGY K TPIQ   +PL+   +D+   AQTG+GKTA+F+LP+++
Sbjct: 373 TFAEAKLSETMQKNVERAGYTKTTPIQQYALPLIRDGNDIMACAQTGSGKTAAFLLPIMS 432

Query: 62  ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            L               PR +IL PTRELA Q+ +   K+     + +  + GG+     
Sbjct: 433 RLMDDNDLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVSYN 492

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-----LDMGFIPYIQNI 170
             ++E+G+ +++ T GRI      G + ++ I   V+DEADRM             +   
Sbjct: 493 KSQIEKGSTIIVGTVGRIKHFCEEGTIKLDKIRFFVLDEADRMIDGMGFGNDIETIVNYE 552

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
                  RQTL+FSAT  D +Q  +  FL+    +        A            +  K
Sbjct: 553 GMPKKENRQTLMFSATFPDVVQNCASAFLRENYTMITIDKIGAANKCVVQEFELCDRSEK 612

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           K  LL  L    D+       C       +        G  +              +   
Sbjct: 613 KDKLLTLLGIDIDSYSTEKSGCGCLYQEDDCIRFSTGDGRYLGCYLVKCSSSRNYTLFLQ 672

Query: 291 FKEGTIQLMVASDLAARGL----------------DIPDVGHVFNFDVPNRAENYIHRIG 334
                 Q   +  L                     DI  V HV N+D+P+  ++YIHRIG
Sbjct: 673 IHGAREQRERSEALRHFRNGTKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIG 732

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           RTGR G  G+A + + + D   I  + K++ 
Sbjct: 733 RTGRVGNSGRATSFI-QNDSPLIPELLKVLG 762


>gi|58259291|ref|XP_567058.1| hypothetical protein CNA07420 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134107439|ref|XP_777604.1| hypothetical protein CNBA7250 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687348|sp|Q5KN79|DBP4_CRYNE RecName: Full=ATP-dependent RNA helicase DBP4
 gi|50260298|gb|EAL22957.1| hypothetical protein CNBA7250 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223195|gb|AAW41239.1| hypothetical protein CNA07420 [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 859

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 120/469 (25%), Positives = 200/469 (42%), Gaps = 43/469 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++L +S K    +  + ++ PTPIQ   IP  LQ  D+ G A+TG+GKT +F++P+L  
Sbjct: 62  FSELPMSSKTQKGLKSSHFLNPTPIQSLAIPPALQARDILGSAKTGSGKTLAFLIPLLER 121

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L   +         +++ PTRELA Q        GK +N +  L+IGG P + + ++L R
Sbjct: 122 LYLEKWGPMDGLGAVVISPTRELAVQTFMQLRDIGKYHNFSAGLVIGGKPLKEEQERLGR 181

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +    +      + +++LV+DEADR+LD+GF+P ++ I S     +   
Sbjct: 182 MNILIATPGRLLQHLDSTVGFDSSAVKVLVLDEADRLLDLGFLPALKAIVSHFSPVQTAP 241

Query: 182 L---------FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
                     FSAT + +L  +++  L  P  I  N P        +          ++ 
Sbjct: 242 GSRPSRQTLLFSATQSKDLAALAKLSLYEPLYISCNKPGEEGVMPANLEQYYAVVPLERK 301

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV-----CAIHGNIDQRSRMKI 287
                          GI+F    K    +    E             +HG   Q +R+ I
Sbjct: 302 LDALWGFVKSHLKMKGIVFVTSGKQARRVRFIFETFRRLHPGLPLMHLHGKQKQPTRLDI 361

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
              F      L++ +D+AARGLD P V  V   D P+  + YIHR+GRT R    G A T
Sbjct: 362 FQRFSSSKSALLICTDVAARGLDFPAVDWVIQLDCPDDVDTYIHRVGRTARYQSAGTALT 421

Query: 348 LVAKEDIKHIDAI--EKLIE-KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
           ++   + + +     EK IE K++    G + +L   ++                   + 
Sbjct: 422 ILCPSEEEGMKTRWGEKAIEVKRIKIKEGKMGNLKQSMQ-------------------NF 462

Query: 405 GFDRRKKNYSSQKSHIPLKESEKISKLQQDIQ------ENDADSLGFRG 447
            F   +  Y  Q++ I   +S  I K +   +      E  A+S+G  G
Sbjct: 463 AFKEPEIKYLGQRAFISYMKSVHIQKDKSIFKIDALPAEAFAESMGLPG 511


>gi|205374127|ref|ZP_03226927.1| DEAD-box ATP dependent DNA helicase [Bacillus coahuilensis m4-4]
          Length = 393

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 131/375 (34%), Positives = 199/375 (53%), Gaps = 11/375 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L P +  A+  AGY +PT IQ   IP+ L      G +QTGTGKT +++LP+L 
Sbjct: 5   QFKIFELKPFINKAIEKAGYKEPTEIQQLIIPIALNGDSAIGQSQTGTGKTLAYLLPILE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKKL 119
            +   +  V+     I  PTRELA Q+     K  +     +T  L IGG   +   +KL
Sbjct: 65  SINPNKDEVQAV---ITAPTRELAQQIFTEAMKLAEFSEEEITGKLFIGGTDKQRSIEKL 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   +++ TPGRI D  N   L + +  +LV+DEAD MLDMGFI  +  I   +P   Q
Sbjct: 122 KKQPHLVVGTPGRIKDLVNEQALNVFSANMLVVDEADLMLDMGFIHDVDQIAGRMPKDLQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+ ++L+     +++NP+   V    +TA  IEH       + S++   + + +
Sbjct: 182 ILVFSATIPEKLKPFLNKYMENPEYANVQPKQATAANIEH---ILIPKRSREKVAVVETI 238

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S       IIF N K     +  +L K+G  V  +HG +  R R K +   +    Q +
Sbjct: 239 LSGINPYLAIIFTNTKVKADEVAAALSKRGIKVGRLHGGLTPRERTKEMKAIRNLEYQYI 298

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DLAARG+DI  V H+ N+++P   + YIHR+GRT RAG  G AFT+    D    DA
Sbjct: 299 VATDLAARGIDIDGVSHIINYELPQDLDFYIHRVGRTARAGLTGVAFTIYEVSDE---DA 355

Query: 360 IEKLIEKKVDWLNGD 374
           + +L  + +++L+ D
Sbjct: 356 LNRLESRGIEFLHQD 370


>gi|308499411|ref|XP_003111891.1| hypothetical protein CRE_29486 [Caenorhabditis remanei]
 gi|308268372|gb|EFP12325.1| hypothetical protein CRE_29486 [Caenorhabditis remanei]
          Length = 593

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 97/404 (24%), Positives = 174/404 (43%), Gaps = 7/404 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  +S  ++  +      +P+PIQ+++IP +++R ++   A TG+GKT +F LP++
Sbjct: 145 LRFTDSNISSSLLSRLTGQSIRQPSPIQMQSIPFMMKRRNILASAPTGSGKTLAFALPVI 204

Query: 61  TILEKGRARVRMPR-----TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             + + + R    +     T++LEPTRELAAQ    F KY    +++VA   G       
Sbjct: 205 EEILELKQRADYSKSSKLLTIVLEPTRELAAQTYTEFVKYCAETSISVANFSGEETDIQH 264

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L                  +  + L+ +    + +  +               +   
Sbjct: 265 ADILVSTP--NRIVFHLDKIDTSALRWLIVDESDRLFEVIEGQEKCFRNQLGAIYKACDA 322

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              +   FSAT + E++K  +  + N   + V   +S+  +++        +  KK A+ 
Sbjct: 323 KCTRVAFFSATFSHEVEKWCKENIDNIGMVCVGERNSSNTSVKQELTYCGTEDGKKIAIR 382

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L  S        +    +   +    S       V +I+     + R + +  F+ G 
Sbjct: 383 NLLRTSFKPPALVFVQSKDRAVQLVKLLSAIDSNLKVDSINSGKSDKERDETMERFRRGE 442

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           I ++V ++L  RGLD+ DVG V N+D+P    +YIHR+GRTGRAG+ G A T     D+K
Sbjct: 443 IWVLVCTELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGRTGRAGKSGHAVTYFTDTDMK 502

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           +I +I  +I +    +   L  +             HA K + I
Sbjct: 503 YIKSIATVIRQSGFEVPEYLLEMKKVSRDRKKEMLKHAPKRHRI 546


>gi|255543078|ref|XP_002512602.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223548563|gb|EEF50054.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 772

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 121/389 (31%), Positives = 203/389 (52%), Gaps = 10/389 (2%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
           + LGL  ++V ++   G     PIQ   +   L+  D+   A+TGTGKT +F +P++  +
Sbjct: 123 SKLGLPQRLVESLEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKCI 182

Query: 64  EKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +     +      PR L+L PTRELA QV     +       +   + GG+ +  Q   
Sbjct: 183 TEDDKSSQRRTGRLPRVLVLAPTRELAKQVEKEINESAPYL--STVCVYGGVSYITQRNA 240

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG DV++ TPGRI+D  N G L +  +E LV+DEAD+ML  GF   ++ I   +P  R
Sbjct: 241 LSRGVDVVVGTPGRIIDLINSGSLKLGEVEYLVLDEADQMLSFGFEEDVEVILENLPSKR 300

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q++LFSATM   ++K++  +L NP +I++               A     + K ++L  L
Sbjct: 301 QSMLFSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAEGIKLYAISTNATSKRSILSDL 360

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +         IIF   K++       +     +  A+HG+I Q  R + L+ F++G   +
Sbjct: 361 VTVYAKGGKTIIFTQTKRDADE-VSMVLTNSIASEALHGDISQHQRERTLNGFRQGKFTV 419

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A+RGLDIP+V  V ++++PN  E ++HR GRTGRAG+ G A  +      + + 
Sbjct: 420 LVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAVLMFTSSQRRTVK 479

Query: 359 AIEKLIEKKVDWL--NGDLSSLNPPLEKI 385
           ++E+ +  + +++   G    L    E++
Sbjct: 480 SLERDVGCRFEFVSPPGTEEVLESSAEQV 508


>gi|197336247|ref|YP_002156253.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197317737|gb|ACH67184.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 421

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 137/389 (35%), Positives = 216/389 (55%), Gaps = 13/389 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F +LGL   ++  + +  Y +PTPIQ + IP VL   D+   A TG+GKTA+F LP+L 
Sbjct: 9   NFTELGLISPLLARLTELEYQQPTPIQAQAIPSVLAGRDLIAGANTGSGKTATFALPLLQ 68

Query: 62  IL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113
            +      +   ++      L+L PTRELA QVAD+ + Y  ++N  +    + GG+   
Sbjct: 69  QIAELQSSKAQASKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGAIKTVSVFGGVSVN 128

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  GAD+L+ TPGR+LD  +   + ++ ++ LV+DEADRML +GF   +  + +L
Sbjct: 129 TQMLALRGGADILVATPGRLLDLISSNAVKLDKVKTLVLDEADRMLSLGFTEELNELLAL 188

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
            P  +QTLLFSAT  +E+Q +++  L NP  I++ +  ++        V    + S    
Sbjct: 189 APKQKQTLLFSATFPEEVQTLTQALLNNPVEIQLQSADASTVVQRVLTVNKGEKTSVLAH 248

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L+Q+        +  +IF N K    +L   L K+G +    HG+  Q +R ++L  FK 
Sbjct: 249 LIQKNQW-----RQALIFVNAKNACNHLADKLAKRGIAAEVFHGDKGQGARTRVLEAFKA 303

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G I +++A+D+AARGLDI  +  V NFD+P    +Y+HRIGR+GRAG  G A +L+  ED
Sbjct: 304 GEIDVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLALSLIDYED 363

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPL 382
             H   IEK  + ++D    +   +N  +
Sbjct: 364 YHHFKIIEKKNKIRLDREQVEGFEVNEEI 392


>gi|50305865|ref|XP_452893.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660558|sp|Q6CT46|DBP3_KLULA RecName: Full=ATP-dependent RNA helicase DBP3
 gi|49642026|emb|CAH01744.1| KLLA0C15499p [Kluyveromyces lactis]
          Length = 504

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 108/406 (26%), Positives = 195/406 (48%), Gaps = 6/406 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF+ +    ++   +    + KPTPIQ  + P +L   DV GIA+TG+GKT +F +P +
Sbjct: 94  LDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAI 151

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +     +    + L++ PTRELA+Q+ DN         L    + GG+P + Q + L 
Sbjct: 152 NNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLR 211

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   V+      +         L +   +++ +    +         + I      +RQT
Sbjct: 212 RSQVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQT 271

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV----ATYAQYSKKCALLQ 236
           L+F+AT   E+++++ +F+  P ++ +      +       +      + +  K   LL+
Sbjct: 272 LMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRKEKKLLELLK 331

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +           +IF   KK    +  +L+  G+ V AIHG++ Q+ R + L+ FK G  
Sbjct: 332 KYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKC 391

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L++A+D+AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG++G A TL  +++   
Sbjct: 392 NLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHL 451

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
             A+  ++      +  +L       +K + + +    K+  + +K
Sbjct: 452 AGALVNVLNGAGQPVPEELKKFGTHTKKKEHSAYGAFFKDVDLSKK 497


>gi|325094395|gb|EGC47705.1| ATP-dependent RNA helicase DBP10 [Ajellomyces capsulatus H88]
          Length = 941

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 127/401 (31%), Positives = 204/401 (50%), Gaps = 36/401 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL+  ++ A+   G+  PTPIQ KTIPLVL   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 88  FQSLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEK 147

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q + +   
Sbjct: 148 LKSHSAKFGS-RALILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMASN 206

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 207 PDIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFATQLTEILHGLPSSRQTLL 266

Query: 183 FSATMTDELQKVSE-----------------------------------NFLQNPKRIEV 207
           FSAT+   L + +                                      L     +  
Sbjct: 267 FSATLPKSLVEFARAGLQEPILIRLDAESKISPDLQNAFFTVKSSEKEGALLHVLHEVIK 326

Query: 208 NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
                T           +++  K+        +   T  + IIF   K +V  L   L  
Sbjct: 327 IPTGETEAQKRAKEEVKHSKKRKRSEFTSHSHKESPTEYSTIIFTATKHHVDYLTSILRT 386

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            GF+V   +G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D P++ +
Sbjct: 387 SGFAVSYAYGSLDQTARKIEVQNFRAGITHILVVTDVAARGIDIPILSNVINYDFPSQPK 446

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            ++HR+GRT RAG+ G +++L+ + D  ++  ++  + + +
Sbjct: 447 IFVHRVGRTARAGKTGWSYSLIRESDTPYLLDLQLFLGRPL 487


>gi|289168235|ref|YP_003446504.1| ATP-dependent RNA helicase [Streptococcus mitis B6]
 gi|288907802|emb|CBJ22642.1| ATP-dependent RNA helicase [Streptococcus mitis B6]
          Length = 447

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 201/452 (44%), Gaps = 43/452 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALEELKFKAPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   +  + V ++      +   +  +
Sbjct: 61  QQLDETSDSVQAV---ITAPSRELATQIYQAARQIAAHSEVEVRVVNYVGGTDKARQIDK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +          
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 237 --TQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGIAITLYQPSDDSDI 354

Query: 358 DAIEKL-------------------------IEKKVDWLNGDLSSL---------NPPLE 383
             +EKL                          EKK D L+ ++  L             +
Sbjct: 355 RELEKLGIKFTPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKKKKVKPGYKK 414

Query: 384 KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           KI  A     RK      ++ G   RK    +
Sbjct: 415 KIQWAVDEKRRKTKRAENRARGRAERKAKRQT 446


>gi|145256121|ref|XP_001402429.1| ATP-dependent RNA helicase dbp5 [Aspergillus niger CBS 513.88]
 gi|134034074|sp|A2QUY7|DBP5_ASPNC RecName: Full=ATP-dependent RNA helicase dbp5
 gi|134078598|emb|CAK49126.1| unnamed protein product [Aspergillus niger]
          Length = 482

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 106/400 (26%), Positives = 201/400 (50%), Gaps = 21/400 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
           +F DLGL P+++  +    + KP+ IQ + +PL+L     ++ G +Q+GTGKTA+FVL +
Sbjct: 75  NFEDLGLDPRILQGLSAMNFRKPSKIQERALPLLLGNPAKNLVGQSQSGTGKTAAFVLNI 134

Query: 60  LTILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L+ L+    +++  P+ LIL PTRELA Q+    +  G+  +    ++   +P +   + 
Sbjct: 135 LSRLDLSSEQLQKTPQALILAPTRELARQIVGVIQVMGQFLD--GLVIGTAVPADTGARP 192

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFIPYIQNITSLVPFT 177
            +    V++ TPG ++D   R  ++ N + +LV+DEAD M    G       + +L+P  
Sbjct: 193 AKMECSVVVGTPGTVMDMIKRRIMIANKLRVLVLDEADNMLDQQGLGDQCIRVKALLPRD 252

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q +LFSAT    + + +  F      I +     T E I+  ++       K       
Sbjct: 253 IQVVLFSATFPAHVHEYASKFAPQANEITLQHEELTVEGIKQLYLDCSNDEDK--YQTLV 310

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L    T+ + IIF   + +   +   +  +G +V ++ G I+   R  ++  F+ G  +
Sbjct: 311 NLYGLLTVGSSIIFVKTRASAQEIEKRMVAEGHTVASLTGGIEGSQRDAVIDQFRAGHAK 370

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPN-----------RAENYIHRIGRTGRAGRHGKAF 346
           +++ +++ ARG+D+  V  V N+D+P              + Y+HRIGRTGR GR G + 
Sbjct: 371 VLITTNVLARGIDVSTVSMVINYDIPEIHQPGARQRQADFQTYLHRIGRTGRFGRVGVSI 430

Query: 347 TLVA-KEDIKHIDAIEKLIEKKVDWLN-GDLSSLNPPLEK 384
           + V+ +E+ + ++ I++     +  ++  D   +   ++K
Sbjct: 431 SFVSNREEWEMLNQIQRYFNTNIQRIDTKDWDEVEEIIKK 470


>gi|3646126|emb|CAA09374.1| ATP-dependent RNA helicase [Homo sapiens]
          Length = 420

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 82/419 (19%), Positives = 154/419 (36%), Gaps = 7/419 (1%)

Query: 16  VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRT 75
           +LDAG+  PTPIQ++ IP++L   ++   A TG+GKT +F +P+L  L++   +      
Sbjct: 1   ILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALI 60

Query: 76  LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           +                   G  + + +         +   K  ++   ++      I  
Sbjct: 61  ISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYL 120

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
                  +       ++ +    L        ++  + +     +      M   +  + 
Sbjct: 121 LKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSAILHMM 180

Query: 196 ENFLQNPKRIEVNTPSSTAETIEHCFVAT---YAQYSKKCALLQQLLQSQDTMKNGIIFC 252
            N   N      +     A       V     +        L  + L  +      ++F 
Sbjct: 181 LNSGANSTWTMSSVCPFGARNSAVETVEQELLFVGSETGKLLAVRELVKKGFNPPVLVFV 240

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
              +    L H L  +G +V  IH    Q+ R   + +F+ G I +++ + L ARG+D  
Sbjct: 241 QSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFK 300

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
            V  V N+D P  +  YIHRIGRTGRAG  GKA T   ++D   + ++  +I++    + 
Sbjct: 301 GVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLLRSVANVIQQAGCPVP 360

Query: 373 GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF----DRRKKNYSSQKSHIPLKESEK 427
             +      L K          +   I      F      ++K ++ Q S   +   +K
Sbjct: 361 EYIKGFQKLLSKQKKKMIKKPLERESISTTPKCFLEKAKDKQKKFTGQNSKKKVALEDK 419


>gi|311694220|gb|ADP97093.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15]
          Length = 457

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 132/406 (32%), Positives = 205/406 (50%), Gaps = 17/406 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GLS  +   +   G+ +PT IQ K I   L   D+  +A+TG+GKTA+F + ++ 
Sbjct: 3   SFNDFGLSTAMCSNLNQLGFAQPTEIQAKAIAPGLAGKDIIAMAKTGSGKTAAFGISLVE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L     R+   + L+L PTRELA QVA    +  +  +    L +  G+    Q   L 
Sbjct: 63  RL---NPRLFAVQALVLCPTRELADQVAKAIRELARARDNIKVLTLCGGVAIGPQIGSLS 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRI DH  +  L +  ++ +V+DEADRMLDMGF   +++I S  P +RQT
Sbjct: 120 HGAHIVVGTPGRIQDHLRKQTLSLVRLKTVVLDEADRMLDMGFQEAMEDILSQTPPSRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT    ++++S+ + ++P  +         +  E  +  +    S     L    Q
Sbjct: 180 MMFSATWPAPIRELSKQYQKSPVDVRAEDTGDNPDIEELFYEVSPQSKSDAIVALLSERQ 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            +      I+FC  K+   ++   L ++GFS   +HG+++QR R  +L  F   +  ++V
Sbjct: 240 PESC----IVFCTTKQQCDDMAAELGERGFSALPLHGDLEQRDRDSVLVRFGNQSCSILV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N +     E + HRIGRTGRAG  G A T         I  I
Sbjct: 296 ATDVAARGLDIKSLPLVINAEPARDPEVHTHRIGRTGRAGEQGHAVTFCTPAQGHKITRI 355

Query: 361 EKLIEKKVDW------LNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
           E    + V W      L   L S+ P ++ + IA     RK+   P
Sbjct: 356 ESERGRSVTWGDTEKLLATPLKSVVPAMKTLCIA---GGRKDKVRP 398


>gi|291434996|ref|ZP_06574386.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291337891|gb|EFE64847.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 497

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 134/451 (29%), Positives = 213/451 (47%), Gaps = 11/451 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA L L  +V+  +   G  +P PIQ  T+P  L+  D+ G  +TG+GKT +F LP+L
Sbjct: 54  VSFAGLELPVEVLRTLSGLGVREPFPIQAATLPDALEGRDILGRGRTGSGKTLAFGLPLL 113

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T     RA  + P  LIL PTRELA QVA     Y +   L +A ++GG+    Q  +L 
Sbjct: 114 TRTAGRRAEPKQPLALILVPTRELAQQVAQALAPYAEALRLRMATVVGGMSIGRQVAELR 173

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA+V++ TPGR+ D   R    +  + I V+DEAD+M D+GF+P + ++   V    Q 
Sbjct: 174 QGAEVVVATPGRLHDLIERNACRLGRVRITVLDEADQMCDLGFLPQVVDVLDQVHPDGQR 233

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+  ++ ++    L +P    V+  + T  T+EH  +  +              +
Sbjct: 234 MLFSATLDRDVDQLVRRCLHDPVVHSVDPSAGTVTTMEHHVLVVHGPDR-----YAVTTE 288

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F + K  V  L   L   G    A+H    Q  R + L+ FK G + ++V
Sbjct: 289 IAARDGRVLLFLDTKHAVDQLTRHLRASGVHAGALHSGKSQPQRTRTLAQFKNGQLTVLV 348

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+++AARGL + D+  V N D P   ++Y+HR GRT RAG  G   TLV     +    +
Sbjct: 349 ATNVAARGLHVDDLDLVVNVDPPTDPKDYVHRAGRTARAGESGSVVTLVLSGQRRETSRM 408

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ----KSTGFDRRKKNYSSQ 416
             +    ++     + S    L +I  A+       +  P     K+T    R    S  
Sbjct: 409 --MAGAGIEPTVTRVRSGEAELSRITGAKTPSGSPLDGGPAVPRPKNTNAPFRGLGTSKD 466

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRG 447
            S     +S K  + ++  +   A  +   G
Sbjct: 467 TSRGVGGKSRKAGEARKLAEARKAALVRRNG 497


>gi|239926683|ref|ZP_04683636.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 471

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 134/451 (29%), Positives = 213/451 (47%), Gaps = 11/451 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA L L  +V+  +   G  +P PIQ  T+P  L+  D+ G  +TG+GKT +F LP+L
Sbjct: 28  VSFAGLELPVEVLRTLSGLGVREPFPIQAATLPDALEGRDILGRGRTGSGKTLAFGLPLL 87

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T     RA  + P  LIL PTRELA QVA     Y +   L +A ++GG+    Q  +L 
Sbjct: 88  TRTAGRRAEPKQPLALILVPTRELAQQVAQALAPYAEALRLRMATVVGGMSIGRQVAELR 147

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +GA+V++ TPGR+ D   R    +  + I V+DEAD+M D+GF+P + ++   V    Q 
Sbjct: 148 QGAEVVVATPGRLHDLIERNACRLGRVRITVLDEADQMCDLGFLPQVVDVLDQVHPDGQR 207

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT+  ++ ++    L +P    V+  + T  T+EH  +  +              +
Sbjct: 208 MLFSATLDRDVDQLVRRCLHDPVVHSVDPSAGTVTTMEHHVLVVHGPDR-----YAVTTE 262

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F + K  V  L   L   G    A+H    Q  R + L+ FK G + ++V
Sbjct: 263 IAARDGRVLLFLDTKHAVDQLTRHLRASGVHAGALHSGKSQPQRTRTLAQFKNGQLTVLV 322

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+++AARGL + D+  V N D P   ++Y+HR GRT RAG  G   TLV     +    +
Sbjct: 323 ATNVAARGLHVDDLDLVVNVDPPTDPKDYVHRAGRTARAGESGSVVTLVLSGQRRETSRM 382

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ----KSTGFDRRKKNYSSQ 416
             +    ++     + S    L +I  A+       +  P     K+T    R    S  
Sbjct: 383 --MAGAGIEPTVTRVRSGEAELSRITGAKTPSGSPLDGGPAVPRPKNTNAPFRGLGTSKD 440

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRG 447
            S     +S K  + ++  +   A  +   G
Sbjct: 441 TSRGVGGKSRKAGEARKLAEARKAALVRRNG 471


>gi|156844624|ref|XP_001645374.1| hypothetical protein Kpol_1058p53 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160358708|sp|A7TJT7|SUB22_VANPO RecName: Full=ATP-dependent RNA helicase SUB2-2
 gi|156116035|gb|EDO17516.1| hypothetical protein Kpol_1058p53 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 442

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 90/375 (24%), Positives = 153/375 (40%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P++  A++D G+  P+ +Q  TIP  +   DV   A++G GKTA FVL  L  
Sbjct: 60  FKDFLLKPELARAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 119

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
           L+     V +                   F KY       +           E    K  
Sbjct: 120 LDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPITKDAELLKNKET 179

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+           ++   L +    ++ +    + ++     +Q+I    P  +Q 
Sbjct: 180 APHIVVATPGRLKALVRDKLIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQV 239

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT+++E++ +   FLQNP  I V+  +         +     +  K        L 
Sbjct: 240 MMFSATLSEEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLQENEKNR--KLAQLL 297

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF    K    L   L +  F    +HGN+ Q  R+     FKE   ++ V
Sbjct: 298 DDLEFNQVIIFVKSTKRANELTKLLNESNFPAITVHGNMKQAERIARYKAFKEFEKRICV 357

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           ++D+  RG+DI  +    N+D+   A+ Y+HR+GR GR G  G A + V + ED + +  
Sbjct: 358 STDVFGRGIDIERINLAINYDLTTEADQYLHRVGRAGRFGTKGLAISFVSSPEDEEVLGK 417

Query: 360 IEKLIEKKVDWLNGD 374
           I++  + K+     +
Sbjct: 418 IQERFDVKIAEFPEE 432


>gi|188035877|ref|NP_001026895.2| probable ATP-dependent RNA helicase DDX59 [Homo sapiens]
 gi|74762230|sp|Q5T1V6|DDX59_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX59; AltName:
           Full=DEAD box protein 59; AltName: Full=Zinc finger HIT
           domain-containing protein 5
 gi|55959939|emb|CAI17056.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Homo sapiens]
          Length = 619

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 115/404 (28%), Positives = 186/404 (46%), Gaps = 12/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF    L   +   +  +GY  PTPIQ++ IP+ L   D+   A TG+GKTA+F+LP+ 
Sbjct: 203 IDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPV- 261

Query: 61  TILEKGRARVRMPRTLILEPTRE-LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +     + P  LIL PTRE          E       +   LL+GG+P   Q  +L
Sbjct: 262 --IMRALFESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRL 319

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   V+I TPGR+LD   +  + +  ++I+V+DEAD ML MGF   + +I   +P   Q
Sbjct: 320 QQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQ 379

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+L SAT+   +++++   L NP RI     +     +    +       KK        
Sbjct: 380 TILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILND 439

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +    +    +      +  G    +IH    Q  R  IL    EG  +++
Sbjct: 440 KKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVV 499

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +  RGLD+  V  V NFD+P+  + Y+H+IGR GR G++G A T +     +    
Sbjct: 500 VSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWD 559

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           I K ++     L   L  LN P        H+  RK     +++
Sbjct: 560 IAKRVKPTGSILPPQL--LNSP------YLHDQKRKEQQKDKQT 595


>gi|1399945|gb|AAB03337.1| RNA helicase GLH-2 [Caenorhabditis elegans]
 gi|1405387|gb|AAB03510.1| GLH-2 [Caenorhabditis elegans]
          Length = 974

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 118/397 (29%), Positives = 185/397 (46%), Gaps = 26/397 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++  L   +   V  AGY K TPIQ  T+PL+ Q HD+   AQTG+GKTA+F+LP++ 
Sbjct: 553 TFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMA 612

Query: 62  ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            L               PR +IL PTREL  Q+ +   K+     + +  + GG+     
Sbjct: 613 RLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFAYQTMMEIRPVYGGLAVGYN 672

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-----LDMGFIPYIQNI 170
             ++E+GA +++ T GRI      G + ++     V+DEADRM             +   
Sbjct: 673 KGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYE 732

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
           +      RQTL+FSAT  D +Q+ + N L+    +        A            +  K
Sbjct: 733 SMPKKENRQTLMFSATFPDSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKCDRSEK 792

Query: 231 KC----------ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
           K                   S+   K  I+F +Q+     L   L         IHG  +
Sbjct: 793 KDKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHGARE 852

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           QR R + L  F+ G+  +++A+ +A RGLDI  V HV N+D+P+  ++YIHRIGRTGR G
Sbjct: 853 QRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVG 912

Query: 341 RHGKAFTLVAKEDIKHIDAIEKLIEKK----VDWLNG 373
             G+A + ++ ED   +  + +++        +W+ G
Sbjct: 913 NAGRATSFIS-EDCNLLSELVRVLSDADQLVPEWMQG 948


>gi|17507879|ref|NP_491876.1| Germ-Line Helicase family member (glh-2) [Caenorhabditis elegans]
 gi|51316069|sp|Q966L9|GLH2_CAEEL RecName: Full=ATP-dependent RNA helicase glh-2; AltName:
           Full=Germline helicase 2
 gi|14573988|gb|AAK68269.1|AC006625_1 Germ line helicase protein 2, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 974

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 118/397 (29%), Positives = 185/397 (46%), Gaps = 26/397 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F++  L   +   V  AGY K TPIQ  T+PL+ Q HD+   AQTG+GKTA+F+LP++ 
Sbjct: 553 TFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMA 612

Query: 62  ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            L               PR +IL PTREL  Q+ +   K+     + +  + GG+     
Sbjct: 613 RLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFAYQTMMEIRPVYGGLAVGYN 672

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-----LDMGFIPYIQNI 170
             ++E+GA +++ T GRI      G + ++     V+DEADRM             +   
Sbjct: 673 KGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYE 732

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
           +      RQTL+FSAT  D +Q+ + N L+    +        A            +  K
Sbjct: 733 SMPKKENRQTLMFSATFPDSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKCDRSEK 792

Query: 231 KC----------ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
           K                   S+   K  I+F +Q+     L   L         IHG  +
Sbjct: 793 KDKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHGARE 852

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           QR R + L  F+ G+  +++A+ +A RGLDI  V HV N+D+P+  ++YIHRIGRTGR G
Sbjct: 853 QRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVG 912

Query: 341 RHGKAFTLVAKEDIKHIDAIEKLIEKK----VDWLNG 373
             G+A + ++ ED   +  + +++        +W+ G
Sbjct: 913 NAGRATSFIS-EDCNLLSELVRVLSDADQLVPEWMQG 948


>gi|224824286|ref|ZP_03697394.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224603705|gb|EEG09880.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 417

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 131/360 (36%), Positives = 197/360 (54%), Gaps = 6/360 (1%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           +GL P +  A L  GY+ P+ IQ   IP +LQ  DV   AQTG+GKTA+F LP+L     
Sbjct: 1   MGLQPSLAQAALSQGYLAPSAIQTSAIPAILQGRDVLATAQTGSGKTAAFCLPLLQQWLT 60

Query: 66  GRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT--VALLIGGIPFEAQNKKLERG 122
            R    R  + LIL PTRELA QV +   +   +      VA++ GG+    Q   L  G
Sbjct: 61  SRQGSPRQVQALILLPTRELAVQVGNTLRELALSLPRRVKVAVVYGGVSINPQMMALRGG 120

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           AD+++ TPGR+LD      L ++ +  LV+DEADR+LD+GF   +  + +L+P  RQ LL
Sbjct: 121 ADIVVATPGRLLDLIGYNALSISTVGTLVLDEADRLLDLGFADELGRLLALLPPYRQNLL 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT    +  ++E  L  P RI++   ++TA  I    +   A          + L   
Sbjct: 181 FSATFPPAVHSLAEQLLSQPLRIDIAQTAATAPDIHQRAIEVDASQRTML---LRHLLQT 237

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F   ++    +   L++ G    A+HG+  Q  R ++L++ K G +Q++VA+
Sbjct: 238 HGWDRVLVFVASRQAADRVTGKLQRAGIRAAALHGDCSQGQRGQVLADLKSGQLQVLVAT 297

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARG+DIP +  V N+D+P    +Y HRIGRTGRAG  G+A + ++ +   H   IEK
Sbjct: 298 DVAARGIDIPLLPVVVNYDLPRSPVDYTHRIGRTGRAGARGEAISFISADCAAHFQLIEK 357


>gi|157155812|ref|YP_001463900.1| ATP-dependent RNA helicase SrmB [Escherichia coli E24377A]
 gi|191167986|ref|ZP_03029788.1| ATP-dependent RNA helicase SrmB [Escherichia coli B7A]
 gi|300817647|ref|ZP_07097862.1| DEAD/DEAH box helicase [Escherichia coli MS 107-1]
 gi|300927047|ref|ZP_07142799.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|301330322|ref|ZP_07222969.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
 gi|307313853|ref|ZP_07593469.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|309794370|ref|ZP_07688793.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|157077842|gb|ABV17550.1| ATP-dependent RNA helicase SrmB [Escherichia coli E24377A]
 gi|190901993|gb|EDV61740.1| ATP-dependent RNA helicase SrmB [Escherichia coli B7A]
 gi|300416931|gb|EFK00242.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|300529635|gb|EFK50697.1| DEAD/DEAH box helicase [Escherichia coli MS 107-1]
 gi|300843656|gb|EFK71416.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
 gi|306906354|gb|EFN36869.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|308121826|gb|EFO59088.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|315061895|gb|ADT76222.1| ATP-dependent RNA helicase [Escherichia coli W]
 gi|323377524|gb|ADX49792.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11]
          Length = 444

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 144/429 (33%), Positives = 218/429 (50%), Gaps = 8/429 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILEKGRARVRMP 73
           A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP +  +L+  R +   P
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +      D+++ T GR+
Sbjct: 78  RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT-MTDELQ 192
           L +          +E L++DEADRMLDMGF   I++I     + +QTLLFSAT   D +Q
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
             +E  L++P  +  N  +   + I   +        K        L  Q      I+F 
Sbjct: 198 DFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTAL--LVHLLKQPEATRSIVFV 255

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
            +++ V  L + L + G + C + G + Q  R + +    EG + ++VA+D+AARG+DIP
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
           DV HVFNFD+P   + Y+HRIGRT RAGR G A +LV   D   +  + + IE+ +    
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 375

Query: 373 GDL--SSLNPPLEKIDI--AQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKI 428
            D        P EK     ++   A++      K     R KK +   K+    ++    
Sbjct: 376 IDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKVKEKEKPRVKKRHRDTKNIGKRRKPSGT 435

Query: 429 SKLQQDIQE 437
               Q  +E
Sbjct: 436 GVPPQTTEE 444


>gi|313890658|ref|ZP_07824285.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120969|gb|EFR44081.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 447

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 112/366 (30%), Positives = 178/366 (48%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ +  + +PT +Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDYNFKDYIQKALEEINFREPTEVQKKLIPVVNSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNK 117
             L++    V+    LI  P+RELA Q+ +  ++   +    + L+             K
Sbjct: 61  EKLDEDSRDVQ---VLITAPSRELATQIFEAAKQIASHSQKEIRLVNYVGGTDKLRQIEK 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  +++ TPGRI D    G L ++     V+DEAD  +DMGF+  +  I + +   
Sbjct: 118 LKGSQPHIVVGTPGRIYDLVKSGDLAIHKASTFVVDEADMTMDMGFLDTVDKIAASLAKN 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L+NP   ++ T +  A+ I        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLRNPLIEQIRTETVIADNI---DNWLVSTKGRDKNAHIL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            + +       +IF N K+    L   L   G  V  IHG +  R R +I++  K+   +
Sbjct: 235 EILTNIQPYLAMIFVNTKERADELHSFLVANGLKVAKIHGGVPPRERKRIMNQVKKLEFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     +IHR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFIHRVGRTGRNGLSGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 RELEKM 360


>gi|240282160|gb|EER45663.1| ATP-dependent RNA helicase DBP5 [Ajellomyces capsulatus H143]
 gi|325088300|gb|EGC41610.1| ATP-dependent RNA helicase DBP5 [Ajellomyces capsulatus H88]
          Length = 497

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 97/385 (25%), Positives = 184/385 (47%), Gaps = 18/385 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +LGL P ++  +    + +P+ IQ K +PL+L     ++ G +Q+GTGKTA+FVL +
Sbjct: 90  SFEELGLHPSILQGLHSMSFRRPSKIQEKALPLLLNNPPTNMIGQSQSGTGKTAAFVLNI 149

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ L+        P+ L+L P+RELA Q+    +  G   +         +P E+   + 
Sbjct: 150 LSRLDLSPQMELAPQALVLAPSRELARQIVGVIQVMGSYVDKLKVATA--VPMESNRNQK 207

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V+      +     R     +   I++ +  + +   G       +  L+P   Q
Sbjct: 208 VEAPVVVGTPGTVMDLIRKRLFNPQHLRVIVLDEADNMLDQQGLGDQCIRVKGLLPKNIQ 267

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT  D + + +  F  N  +I +     T E I+  ++   +   K   L++   
Sbjct: 268 VVLFSATFPDHVVRYANKFAPNANQITLKHEELTVEGIKQLYLDCDSDEHKFDILVK--F 325

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+ + IIF   + +   +   +  +G +V ++ G ++ + R +I+  F++G  +++
Sbjct: 326 YGLLTIGSSIIFVKTRASAAEIERRMVAEGHTVVSLTGGVEGQKRDEIIDKFRQGDAKVL 385

Query: 300 VASDLAARGLDIPDVGHVFNFDVPN-----------RAENYIHRIGRTGRAGRHGKAFTL 348
           + +++ ARG+D+  V  V N+D+P             A+ Y+HRIGRTGR GR G A + 
Sbjct: 386 ITTNVLARGIDVQTVSMVINYDIPELHAPKATKRIADAQTYLHRIGRTGRFGRVGVAVSF 445

Query: 349 V-AKEDIKHIDAIEKLIEKKVDWLN 372
           V +KE+ + +  I+     ++  +N
Sbjct: 446 VASKEEWQMLQDIKTYFNTEIQRVN 470


>gi|302817541|ref|XP_002990446.1| hypothetical protein SELMODRAFT_160867 [Selaginella moellendorffii]
 gi|300141831|gb|EFJ08539.1| hypothetical protein SELMODRAFT_160867 [Selaginella moellendorffii]
          Length = 483

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 95/385 (24%), Positives = 173/385 (44%), Gaps = 20/385 (5%)

Query: 2   DFADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQ--RHDVCGIAQTGTGKTASFVLP 58
            F +L +S  ++  +  +  + +P+ IQ +T+PL++     ++   A  G+GKT  FVL 
Sbjct: 82  TFEELKISEPLLRGIYSEMKFERPSKIQAETLPLIMNPPHRNLVAQAHNGSGKTTCFVLG 141

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           ML+ +         P+ L + PTRELA Q     E+  +   +T   +I        + +
Sbjct: 142 MLSRVNTSLHE---PQALCVCPTRELALQNQAVLERMARFTQITSTCIIPPTENIKSSLR 198

Query: 119 LERGADVLICTPG--RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
                 V+  TPG        +R   + +   ++  +    +   GF  +   +   +  
Sbjct: 199 GHIHDQVIFGTPGSLERAILNDRNLDVQHLNVLVFDEADHMLDQNGFRDFSMKLLRRINK 258

Query: 177 TRQTLL---FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
              +     FSAT +++++      +    R+ V     + + I+   V    + +K   
Sbjct: 259 QAPSCQLLLFSATFSEKVKNFVSKSIPIANRVFVEKLELSLDVIKQYRVNCPTERAKFEV 318

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L  ++    + +   IIF   +++V  L   LE  G    +IHG      R KI+  F++
Sbjct: 319 LKDRIYPIAEKLGQSIIFAESRRSVTELHEKLEADGHKCSSIHGGYKPDVRDKIIDEFRQ 378

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVP--------NRAENYIHRIGRTGRAGRHGKA 345
           G  ++++++D+ +RG D+  V  V NFD+P           E Y+HRIGR+GR GR G A
Sbjct: 379 GITRILISTDVLSRGFDVAQVTLVVNFDLPLARDYHKQPDYETYLHRIGRSGRFGRKGAA 438

Query: 346 FTL-VAKEDIKHIDAIEKLIEKKVD 369
           F L V +ED + +  IE+   K + 
Sbjct: 439 FNLVVTQEDTRMLSLIEEHFGKTIP 463


>gi|311746403|ref|ZP_07720188.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1]
 gi|126575289|gb|EAZ79621.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1]
          Length = 399

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 130/349 (37%), Positives = 190/349 (54%), Gaps = 5/349 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L L   ++  + + GY   T IQ ++I  +L+  D+ GI+ TG+GKT +F++P++ 
Sbjct: 56  SFASLSLDSVMMRNLSEKGYENMTNIQEQSIEALLEGRDLLGISNTGSGKTGAFLIPIIE 115

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              K   +      LI+ PTRELA Q+   F+   K   L  A  IGG       K L R
Sbjct: 116 HALKNPGQFT---ALIVTPTRELALQIDQEFKSLSKGMRLHSATFIGGTNINTDMKVLSR 172

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+LD  NR  L +N ++ LV+DE DRMLDMGF+  ++ +   +    QT+
Sbjct: 173 KLHVIVGTPGRLLDLTNRKLLKLNQVKTLVLDEFDRMLDMGFVNDVKKLVGGMTQREQTM 232

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+    + + ++ L+NP  +++NT  ST E IE   +       K    +   L  
Sbjct: 233 LFSATLEPNQKNLIQSLLKNPVEVKINTGVSTNENIEQGIIRVPEGKDK--FGMLADLFQ 290

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
              M   I+F   K+    L   L + G     IHGN  Q  R K +  FK G  +++VA
Sbjct: 291 NRAMDKVIVFTETKRLADRLSKKLNQAGVKSGLIHGNKSQNFRNKTIEQFKSGETRVLVA 350

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           +D+AARG+D+ DV HV N+ +P   ++YIHRIGRTGRAG+ G A T V 
Sbjct: 351 TDVAARGIDVADVSHVINYQLPMTMDSYIHRIGRTGRAGKTGHAITFVN 399


>gi|115433274|ref|XP_001216774.1| hypothetical protein ATEG_08153 [Aspergillus terreus NIH2624]
 gi|121735241|sp|Q0CDT1|DBP5_ASPTN RecName: Full=ATP-dependent RNA helicase dbp5
 gi|114189626|gb|EAU31326.1| hypothetical protein ATEG_08153 [Aspergillus terreus NIH2624]
          Length = 487

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 106/400 (26%), Positives = 206/400 (51%), Gaps = 21/400 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
           +F DLGL P+++  +    + KP+ IQ + +PL+L     ++ G +Q+GTGKTA+FVL +
Sbjct: 79  NFEDLGLDPRILQGLSAMNFRKPSKIQERALPLLLSNPPKNLVGQSQSGTGKTAAFVLNI 138

Query: 60  LTILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L+ L+    +++  P+ LIL PTRELA Q+    +  G+  +    ++   +P +  N+ 
Sbjct: 139 LSRLDLSTEQMQKTPQALILAPTRELARQIVGVIQVMGQFLD--NLIIGTAVPADTNNRP 196

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFIPYIQNITSLVPFT 177
               A V++ TPG ++D   +  ++   +++LV+DEAD M    G       + +L+P T
Sbjct: 197 ARMEASVVVGTPGTVMDMIKKRIMVPAKLQVLVLDEADNMLDQQGLGDQCIRVKALLPRT 256

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q +LFSAT    + + +  F      + +     T E I+  ++    +  K   L+  
Sbjct: 257 IQVVLFSATFPTHVHQYASKFAPQANELTLQHEELTVEGIKQLYLDCSDEEDKYRTLVSL 316

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                 T+ + IIF   +++ + +   +  +G +V ++ G I+   R  ++  F+ G  +
Sbjct: 317 --YGLLTVGSSIIFVKTRQSAMEIEKRMVAEGHTVASLTGGIEGSQRDAVIDQFRAGAAK 374

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPN-----------RAENYIHRIGRTGRAGRHGKAF 346
           +++ +++ ARG+D+  V  V N+D+P              + Y+HRIGRTGR GR G + 
Sbjct: 375 VLITTNVLARGIDVSTVSMVINYDIPELHLPPNQPRQADFQTYLHRIGRTGRFGRVGVSI 434

Query: 347 TLVA-KEDIKHIDAIEKLIEKKVDWLN-GDLSSLNPPLEK 384
           + V+ +++   ++ I+K     +  ++  D   +   ++K
Sbjct: 435 SFVSNRDEWNMLNQIQKYFNTSIQRIDTKDWDEVEDIIKK 474


>gi|225559228|gb|EEH07511.1| ATP-dependent RNA helicase DBP5 [Ajellomyces capsulatus G186AR]
          Length = 497

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 97/385 (25%), Positives = 184/385 (47%), Gaps = 18/385 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +LGL P ++  +    + +P+ IQ K +PL+L     ++ G +Q+GTGKTA+FVL +
Sbjct: 90  SFEELGLHPSILQGLHSMSFRRPSKIQEKALPLLLNNPPTNMIGQSQSGTGKTAAFVLNI 149

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ L+        P+ L+L P+RELA Q+    +  G   +         +P E+   + 
Sbjct: 150 LSRLDLSPQMELAPQALVLAPSRELARQIVGVIQVMGSYVDKLKVATA--VPMESNRNQK 207

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V+      +     R     +   I++ +  + +   G       +  L+P   Q
Sbjct: 208 VEAPVVVGTPGTVMDLIRKRLFNPQHLKVIVLDEADNMLDQQGLGDQCIRVKGLLPKNIQ 267

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT  D + + +  F  N  +I +     T E I+  ++   +   K   L++   
Sbjct: 268 VVLFSATFPDHVVRYANKFAPNANQITLKHEELTVEGIKQLYLDCDSDEHKFDILVK--F 325

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+ + IIF   + +   +   +  +G +V ++ G ++ + R +I+  F++G  +++
Sbjct: 326 YGLLTIGSSIIFVKTRASAAEIERRMVAEGHTVVSLTGGVEGQKRDEIIDKFRQGDAKVL 385

Query: 300 VASDLAARGLDIPDVGHVFNFDVPN-----------RAENYIHRIGRTGRAGRHGKAFTL 348
           + +++ ARG+D+  V  V N+D+P             A+ Y+HRIGRTGR GR G A + 
Sbjct: 386 ITTNVLARGIDVQTVSMVINYDIPELHAPKATKRIADAQTYLHRIGRTGRFGRVGVAVSF 445

Query: 349 V-AKEDIKHIDAIEKLIEKKVDWLN 372
           V +KE+ + +  I+     ++  +N
Sbjct: 446 VASKEEWQMLQDIKTYFNTEIQRVN 470


>gi|255537383|ref|XP_002509758.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223549657|gb|EEF51145.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 771

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 109/408 (26%), Positives = 186/408 (45%), Gaps = 17/408 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58
           F + G+SP  V A+  AGYV+ T +Q  T+   L+  D    A+TGTGK+A+F+LP    
Sbjct: 304 FDECGISPLTVKALTTAGYVQMTRVQEATLSACLEGKDALVKAKTGTGKSAAFLLPAIEA 363

Query: 59  -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
            +       + RV     LIL PTRELA+Q+A       K ++      + G      ++
Sbjct: 364 VLKAKSSNVKPRVSPIYVLILCPTRELASQIAAEANAMLKYHDGISVQTLVGGTRFKDDQ 423

Query: 118 KLERGADVLICTPGRILDHFNRGKL-----LMNNIEILVIDEADRMLDMGFIPYIQNITS 172
           K        I          +          +  +++L++DEAD +LD+GF   ++ I  
Sbjct: 424 KRLEMNPCQIIVATPGRLLDHIENKGGLSVHLMGLKMLILDEADHLLDLGFRKDVEKIID 483

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV----NTPSSTAETIEHCFVATYAQY 228
            +P  R +L+FSAT+  E++++S+  L+            +  + ++  +   V  +  +
Sbjct: 484 CLPRERHSLMFSATIPKEVRRISQLVLKREHAFIDTVGLGSVETPSKVKQFSVVVPHELH 543

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            +      +    Q      I+FC        +   L +   +V  IH    Q  R ++ 
Sbjct: 544 FQVVHHFLKEHILQTPDYKVIVFCTTGMVTSLMYTLLREMKMNVKEIHSRKPQLYRTRVS 603

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             F+E    ++V+SD++ARG++ PDV  V    +P   E YIHR+GRTGR G+ G+   L
Sbjct: 604 DEFRESRRSILVSSDVSARGMNYPDVTLVIQVGLPTDREQYIHRLGRTGREGKDGEGILL 663

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLS---SLNPPLEKIDIAQHNHA 393
           +A  +   +D +E L   K+   + D      +   + KID +    A
Sbjct: 664 LAPWEEYFLDELEDLPLDKLPIPDIDPETKLKVEDSMSKIDSSVKEAA 711


>gi|126306582|ref|XP_001377534.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
           [Monodelphis domestica]
          Length = 719

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 110/369 (29%), Positives = 187/369 (50%), Gaps = 7/369 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF   G    + C +  +GY  PTPIQ++ IP+ L   D+   A TG+GKTA+F+LP+ 
Sbjct: 206 IDFEHCGFPDILNCNLKKSGYEVPTPIQMQMIPIGLLGRDIVCSADTGSGKTAAFLLPV- 264

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             + +   + R P  LIL PTRELA Q+    ++      N+   LL+GG+P   Q  +L
Sbjct: 265 --IIRALEKNRTPSALILAPTRELAIQIERQAKELMCGLPNMRTVLLVGGLPLPPQLYRL 322

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   V+I TPGR+L+   +  + ++ I+I+VIDEAD ML +GF   + +I   +P   Q
Sbjct: 323 KQNVKVIIATPGRLLEIMKQSSVELSGIKIVVIDEADTMLKLGFQQQVLDILENIPPDHQ 382

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLL SAT+   +++++   L +P RI +   +     +    +       KK        
Sbjct: 383 TLLVSATIPASIERLASQLLHDPLRITIGEKNLPCPNVRQIILWVEEPSKKKKLFEILND 442

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +    +    +      +  G    ++H +  Q  R  IL    +G  +++
Sbjct: 443 EKLFKPPVLVFVDCKLGADLLSDAVHKITGLRSISMHSDKSQMERTSILQGLFQGEYEVV 502

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +  RGLD+ +V  V NFD+P+  + Y+H++GR GR G +G A T +     K    
Sbjct: 503 VSTGVLGRGLDLINVTLVVNFDMPSSMDEYVHQVGRAGRLGHNGTAITFINNNTKKLFWD 562

Query: 360 IEKLIEKKV 368
           I   +++K+
Sbjct: 563 I---VKRKI 568


>gi|302502754|ref|XP_003013338.1| hypothetical protein ARB_00523 [Arthroderma benhamiae CBS 112371]
 gi|291176901|gb|EFE32698.1| hypothetical protein ARB_00523 [Arthroderma benhamiae CBS 112371]
          Length = 455

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 128/392 (32%), Positives = 210/392 (53%), Gaps = 5/392 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L+ +++  V   G+ +P+ IQ + I  V++  DV   AQ+GTGKTA+F +  L 
Sbjct: 24  SFDAMNLNSELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++     ++  + LIL PTRELA Q+       G   N+     IGG       K L+ 
Sbjct: 84  KVDTN---LKACQALILAPTRELAQQIQKVVVAIGDFMNVDCHACIGGTNVREDMKALQD 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  ++I++ V+DEAD ML  GF   I +I   +P + Q +
Sbjct: 141 GPQVVVGTPGRVHDMIQRRVLKTDHIKMFVLDEADEMLSRGFTEQIYDIFQFLPQSTQVV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 201 LLSATMPPDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L+ + F+V A+HG+++Q  R  I+  F+ G+ ++++A
Sbjct: 259 TVTITQAVIFCNTRRKVDWLTDKLQARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 378

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           +    +++ +  +++    P   +   +    
Sbjct: 379 QFYSTQIEEMPMNVAGKLFPSNSVRPRKRKKT 410


>gi|156843532|ref|XP_001644833.1| hypothetical protein Kpol_1041p33 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160358707|sp|A7TLA0|SUB21_VANPO RecName: Full=ATP-dependent RNA helicase SUB2-1
 gi|156115484|gb|EDO16975.1| hypothetical protein Kpol_1041p33 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 441

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 89/375 (23%), Positives = 153/375 (40%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P++  A++D G+  P+ +Q  TIP  +   DV   A++G GKTA FVL  L  
Sbjct: 59  FKDFLLKPELARAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 118

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
           L+     V +                   F KY       +           E    K  
Sbjct: 119 LDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPINKDAELLKNKET 178

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+           ++   L +    ++ +    + ++     +Q+I    P  +Q 
Sbjct: 179 APHIVVATPGRLKALVRDKLIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQV 238

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT+++E++ +   FLQNP  I V+  +         +     +  K        L 
Sbjct: 239 MMFSATLSEEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYTKLQENEKNR--KLAQLL 296

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF    K    L   L +  F    +HG++ Q  R+     FKE   ++ V
Sbjct: 297 DDLEFNQVIIFVKSTKRANELTKLLNESNFPAITVHGHMKQAERIARYKAFKEFEKRICV 356

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           ++D+  RG+DI  +    N+D+   A+ Y+HR+GR GR G  G A + V + ED + +  
Sbjct: 357 STDVFGRGIDIERINLAINYDLTTEADQYLHRVGRAGRFGTKGLAISFVSSPEDEEVLGK 416

Query: 360 IEKLIEKKVDWLNGD 374
           I++  + K+     +
Sbjct: 417 IQERFDVKIAEFPEE 431


>gi|149188012|ref|ZP_01866307.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           shilonii AK1]
 gi|148838000|gb|EDL54942.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           shilonii AK1]
          Length = 406

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 129/414 (31%), Positives = 220/414 (53%), Gaps = 11/414 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F++L LS  ++ A+    +   T IQ   IP ++ +HDV  +AQTG+GKT +F L ++
Sbjct: 1   MSFSELTLSSALIDAIPSE-FSHATHIQTLAIPAIIAQHDVLALAQTGSGKTLAFGLGLI 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +    + LIL PTRELA QV +  +        +VA++ GG   E Q  +L 
Sbjct: 60  EQLLNNEIK----QALILVPTRELAKQVTETIDPIVALLGYSVAVVCGGEDVEPQVGQLN 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++++ TPGR+LD  N+  +    IE +V+DE DR+LDMGF P IQ I + +   +QT
Sbjct: 116 AAPEIVVATPGRLLDIMNKQLVDTQRIETVVLDEVDRLLDMGFWPDIQRILNGLRHRKQT 175

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT++++L+      L NP R+  N  +S  E I                + Q    
Sbjct: 176 LMFSATLSEQLEAKVTTLLNNPIRVVANKTNSVVEQIAETLYLVNKGSKANVLIKQ---I 232

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      ++F   + N   LC  L K G +  A+HGN +Q  R + L  FK+G IQ+++
Sbjct: 233 TEHQWPQVLVFIGARDNADALCKKLNKAGITSGALHGNKEQTERERTLQAFKQGEIQVLI 292

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+ ARG+ + ++  V N+++P+    Y+HR+GRT RAG+ G+A +LV   + ++++AI
Sbjct: 293 ATDILARGIHVDNLPVVINYELPSDPSVYVHRVGRTARAGKTGQALSLVCHGETEYLEAI 352

Query: 361 EKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            +L  + +   +  +  ++      E     +   A +      +++ F  +K+
Sbjct: 353 RQLTSRSLVLEELADFPVTDKPSTGESKRPKRDKQANRRTNKKTRASQFKSKKR 406


>gi|148245005|ref|YP_001219699.1| ATP-dependent RNA helicase DbpA [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326832|dbj|BAF61975.1| ATP-dependent RNA helicase DbpA [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 462

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 129/361 (35%), Positives = 201/361 (55%), Gaps = 7/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+ L L P ++  +   GY   TPIQ  ++P++L   DV G  +TG+GKT +F L +L 
Sbjct: 5   DFSSLKLHPNLLKNLTILGYDLMTPIQKLSLPVILSGKDVIGQGKTGSGKTVAFGLGLLQ 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            L+    +++     +L PTRELA QVA   +K  +  N    +++  G+ F  Q   L 
Sbjct: 65  KLDVKLFKLQSI---VLCPTRELANQVAVEIQKLARVINNIKVVVLCGGMSFGLQIDSLR 121

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G  V++ TPGRI +H  +G L ++ I  LV+DEADRMLDMGF   + NI   +P  RQT
Sbjct: 122 HGVHVVVGTPGRIEEHLRKGTLKLSYINTLVLDEADRMLDMGFQESVDNIIETMPTNRQT 181

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  D +  +++  +++P    +       E               +  +  +LL 
Sbjct: 182 LLFSATCLDTITNITQRVMRSPI---MVKVPLINERSTIKQYFYKINTDNERMMALRLLL 238

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++   ++ ++FCN K++   + + L   GF   AIHG++DQR R + L  F   ++ ++V
Sbjct: 239 AKYKPESSLVFCNTKRDAQKVANELVYYGFYALAIHGDLDQRERDQALIRFSNKSVSILV 298

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NFD+ +  + +IHRIGRTGRAG  G A TL +  +   +D +
Sbjct: 299 ATDVAARGLDIDSLDMVINFDIAHDDQVHIHRIGRTGRAGHFGIACTLYSNRETYKLDTL 358

Query: 361 E 361
           +
Sbjct: 359 K 359


>gi|158291908|ref|XP_313440.4| AGAP003663-PA [Anopheles gambiae str. PEST]
 gi|157017513|gb|EAA44671.4| AGAP003663-PA [Anopheles gambiae str. PEST]
          Length = 746

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 156/376 (41%), Gaps = 2/376 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F ++ +   V   +   GY  PTPIQ +  P+ L   ++ G+A+TG+GKT +++LP   
Sbjct: 371 EFDEIEIPDYVKREIDRQGYKSPTPIQAQGWPIALSGLNMVGVAKTGSGKTLAYMLPAIV 430

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               +K    VR P  L+L PTRELA Q+     ++G +  +    L GG     Q ++ 
Sbjct: 431 HINHQKPDPSVRGPLVLVLAPTRELAQQIQQVATEFGSSSYIRNTCLFGGSSKGPQARRS 490

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            R +         +       +                         I  + S      +
Sbjct: 491 ARSSITSGRIVRFLCGPPPGPRRCSVWRVTSSATTCRSTSVRWSCRRITTLRSTCALLPR 550

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
                +  T        + L+           S A      F +     S     L + L
Sbjct: 551 RTKTQSKCTQPAGANGPSRLELSPGTMFFLSGSNANVFLFVFSSPLFSLSTVLGKLLEEL 610

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      +IF   K+    +   +++ G+   ++HG+  Q+ R + L  F+  +  ++
Sbjct: 611 YHEGNPGKILIFTTTKRQCDRISMQIKRYGYDSVSMHGDKSQQERERALGRFRNSSSCIL 670

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +  V N+D P + E+Y+HRIGRTGR+   G A+T     + K    
Sbjct: 671 VATDVAARGLDVDGIKVVINYDYPQQTEDYVHRIGRTGRSNATGVAYTFFTMAERKQARE 730

Query: 360 IEKLIEKKVDWLNGDL 375
           +  ++++    +  +L
Sbjct: 731 LVNILQEAKQDIPSEL 746


>gi|226357411|ref|YP_002787150.1| ATP-independent RNA helicase [Deinococcus deserti VCD115]
 gi|226319401|gb|ACO47396.1| putative ATP-independent RNA helicase [Deinococcus deserti VCD115]
          Length = 469

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 134/376 (35%), Positives = 203/376 (53%), Gaps = 9/376 (2%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M  F  L L    +  +   GY + T IQ +++P VL+  D+   A+TG+GKT +F + +
Sbjct: 3   MSPFNVLPLKAAFLANLDTLGYREMTTIQQRSLPHVLKGRDLLAQAETGSGKTVAFGIGI 62

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL-IGGIPFEAQNKK 118
           L  L+  R +V+    L+L PTRELA QVA+   +  +       L   GG+P   Q   
Sbjct: 63  LHRLDPARLKVQG---LVLCPTRELADQVANELRRLARGEGNIKVLTLTGGVPLRHQVTS 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G  +++ TPGRI DH  RG + + ++  LV+DEADRM DMGF   + +I    P TR
Sbjct: 120 LEHGVHIVVGTPGRIRDHLARGSINLEDVHTLVLDEADRMTDMGFYDEMASIVCACPRTR 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT  D +++ +  FL +P  + V+   +  +  +  +   + +       L   
Sbjct: 180 QTLLFSATYPDNIKQTTAEFLNDPVEVVVDAQHTATQIKQLFYEIGFDERDAAIGRLL-- 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +     + ++FCN + +   L   L+ QGFS   +HG+++QR R +IL  F   +  +
Sbjct: 238 --NHFKPLSTLVFCNTRVHCRELAEELQAQGFSALGLHGDLEQRERDEILVLFSNRSCSV 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  +  V N DV    E ++HR+GRTGRAG  G A TL +  + K + 
Sbjct: 296 LVATDVAARGLDISRLDAVMNADVSRDTEVHVHRVGRTGRAGEAGLALTLCSPNEKKWVS 355

Query: 359 AIEKLIEKKVDWLNGD 374
            IE   +  V W N D
Sbjct: 356 LIEDYQKTTVQWANLD 371


>gi|329767235|ref|ZP_08258762.1| hypothetical protein HMPREF0428_00459 [Gemella haemolysans M341]
 gi|328836902|gb|EGF86549.1| hypothetical protein HMPREF0428_00459 [Gemella haemolysans M341]
          Length = 443

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 112/396 (28%), Positives = 194/396 (48%), Gaps = 14/396 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F     +  V  AV+D G+  PT IQ +    VL+  ++   +QTG+GK+ SF+LP+ +
Sbjct: 5   SFEQYKFNEFVNKAVIDLGFDNPTKIQERVFSPVLKGKNIVAKSQTGSGKSHSFLLPIFS 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKKL 119
            L+  + + +     IL PTREL+ Q+ D           ++ + L IGG       +++
Sbjct: 65  KLDVAKKKTQSI---ILAPTRELSRQLYDMALHIASFSEEDIKITLCIGGQDLNRDIERV 121

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++I TP R+L+      L +  +E LVIDE D M+D+GF+  +  I+       Q
Sbjct: 122 SNAPHIIIGTPTRVLELDRASALAIKEVESLVIDECDMMIDLGFMEDVDKISKRAAENCQ 181

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            L+FSAT+  ++    + +L+N + IEV+               + ++  K        +
Sbjct: 182 FLVFSATIPAQMNHFLKKYLKNAQYIEVDNAKFGKIEYILIPEKSSSRLEK-----LHEI 236

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       +IF N+K  V  +   L  +G +V  +HG++  R R ++           +
Sbjct: 237 TTVINPYLALIFANKKTEVEEVSSYLISKGLNVGVLHGDLTPRERKQMQRRINNLDFTYV 296

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VASDL +RG+DI  V HV NF++PN  + +IHR GRTGRAG  G   T+   +D + +  
Sbjct: 297 VASDLMSRGIDIEGVSHVINFNIPNDLDFFIHRAGRTGRAGLSGDCITIYNNKDEEKLQD 356

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395
           +EK   + +++ + D+ +    +E  D  +    +K
Sbjct: 357 LEK---RGIEFNHQDIRN-GEFVEAKDRNKRQSRKK 388


>gi|290963039|ref|YP_003494221.1| DEAD-box RNA helicase [Streptomyces scabiei 87.22]
 gi|260652565|emb|CBG75698.1| probable DEAD-box RNA helicase [Streptomyces scabiei 87.22]
          Length = 497

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 132/425 (31%), Positives = 207/425 (48%), Gaps = 10/425 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL +  +++  +   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 71  FDDLDMPRQLLAELHRQGVTVPFPIQGATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 130

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y ++  L +A ++GG+    Q   L  G
Sbjct: 131 TAGQRAEPRHPLGLVLVPTRELAQQVTDALTPYARSVGLRLATVVGGMSIGRQAGMLRAG 190

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D   RG+  +N + I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 191 AEVVVATPGRLKDLIERGECRLNQVGITVLDEADQMADMGFMPQVTALLDQVRPEGQRML 250

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  +    T+EH  +  +             ++  
Sbjct: 251 FSATLDRNVDLLVRRYLSDPVVHSVDPSAGAVTTMEHHLLHVHGADK-----HAATIEIA 305

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F + K  V  L   L   G    A+HG   Q  R + L+ FK G + ++VA+
Sbjct: 306 ARDGRVIMFLDTKHAVDRLAQDLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVAT 365

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           ++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV     + +D +  
Sbjct: 366 NVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRSMDRLMA 425

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPL 422
               +    +  + S +  L +I  AQ   A    P+   +   +R K+  SS+    P 
Sbjct: 426 AAGIRPQ--STQIRSGDESLSRITGAQ---APSGVPVVITAPVVERPKRAPSSRGRRRPA 480

Query: 423 KESEK 427
             + +
Sbjct: 481 SATRR 485


>gi|284029039|ref|YP_003378970.1| DEAD/DEAH box helicase domain-containing protein [Kribbella flavida
           DSM 17836]
 gi|283808332|gb|ADB30171.1| DEAD/DEAH box helicase domain protein [Kribbella flavida DSM 17836]
          Length = 715

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 128/353 (36%), Positives = 188/353 (53%), Gaps = 5/353 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ LGL+P++V  +   G   P PIQ  TIP  L   DV G  QTG+GKT  F LP L  
Sbjct: 270 FSALGLAPRLVQRLARDGITAPFPIQTATIPDALAGKDVLGRGQTGSGKTLGFGLPTLMR 329

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G    R PR +IL PTRELA QV D  E       ++V L+ GG+P+  Q   L RG
Sbjct: 330 LAGGHTESRRPRGMILVPTRELAMQVHDALEPLAHVMGVSVKLIAGGLPYPKQIDALRRG 389

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+LI TPGR++D   +G   +  +E+ V+DEAD M DMGF+P +  +  + P   Q LL
Sbjct: 390 VDLLIATPGRLIDLCEQGAADLGAVEVAVLDEADHMCDMGFMPAVTTLLDMTPKEGQRLL 449

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+ +++  + + +L++P      +  ++  T+EH  +     + +            
Sbjct: 450 FSATLDNDVDTIVKTYLKDPVTHSTESGQASVTTMEHHLLVIEPGHKQSLTAELA----- 504

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   K     +   L  +G    A+HG + Q +R + L  FK+G++ ++VA+
Sbjct: 505 SRDGRTIIFVRTKLGADRVATQLRDRGVMAAALHGGLTQGARNRTLDQFKDGSVPVLVAT 564

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
           D+AARG+ + DVG V   D P   ++Y+HR GRT RAG  G   TL+     +
Sbjct: 565 DVAARGIHVDDVGLVVQADPPAEHKDYLHRAGRTARAGGKGAVVTLLLPHQRR 617


>gi|114571726|ref|XP_001143546.1| PREDICTED: probable ATP-dependent RNA helicase DDX59 isoform 3 [Pan
           troglodytes]
          Length = 619

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 116/404 (28%), Positives = 186/404 (46%), Gaps = 12/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF    L   +   +  +GY  PTPIQ++ IP+ L   D+   A TG+GKTA+F+LP+ 
Sbjct: 203 IDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPV- 261

Query: 61  TILEKGRARVRMPRTLILEPTRE-LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +     + P  LIL PTRE          E       +   LL+GG+P   Q  +L
Sbjct: 262 --IMRALFESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRL 319

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   V+I TPGR+LD   +  + +  ++I+V+DEAD ML MGF   + +I   VP   Q
Sbjct: 320 QQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENVPNDCQ 379

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+L SAT+   +++++   L NP RI     +     +    +       KK        
Sbjct: 380 TILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILND 439

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +    +    +      +  G    +IH    Q  R  IL    EG  +++
Sbjct: 440 KKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVV 499

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +  RGLD+  V  V NFD+P+  + Y+H+IGR GR G++G A T +     +    
Sbjct: 500 VSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWD 559

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           I K ++     L   L  LN P        H+  RK     +++
Sbjct: 560 IAKRVKPTGSILPPQL--LNSP------YLHDQKRKEQQKDKQT 595


>gi|80477520|gb|AAI08449.1| LOC398188 protein [Xenopus laevis]
          Length = 768

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 110/371 (29%), Positives = 173/371 (46%), Gaps = 12/371 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+   +S   +  +   G     PIQ KT   V    DV   A+TGTGKT SF +P++ 
Sbjct: 190 DFSKFPISKDTIKNLQAKGVTYLFPIQSKTFHTVYSGKDVVVQARTGTGKTFSFGIPLVE 249

Query: 62  I---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                ++  AR R PR +IL PT      +    E       L VA   GG P++ Q   
Sbjct: 250 RLSEDQQPLARGRAPRVIILTPT--RELAIQITNELRSMTKKLKVACFYGGTPYQQQVFA 307

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++ G D L+ TPGRI D     +L +  ++ +V+DE D M DMGF   ++ I S+     
Sbjct: 308 IKDGIDFLVGTPGRIRDLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYKPD 367

Query: 179 QTLL-----FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV--ATYAQYSKK 231
                    FSAT  D +  V++ +++            + +             +  K 
Sbjct: 368 PEENPQTLLFSATCPDWMYNVAKKYMRKQYEKVDLVGHRSQKAAITVEHLAIECNRSQKA 427

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L   +     +    IIFC+ K     L  +      S   +HG++ Q+ R  +L  F
Sbjct: 428 AVLGDIVQVYSGSHGKTIIFCDSKLQAHELSTNCGSLKQSAKPLHGDLQQKEREVVLKGF 487

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           ++GT ++++A+++AARGLDIP+V  V  +  P  A+ Y+HR GRTGRAGR G   +L   
Sbjct: 488 RQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCISLYEP 547

Query: 352 EDIKHIDAIEK 362
            +  ++  +E+
Sbjct: 548 WEKHYLRNVER 558


>gi|56460521|ref|YP_155802.1| ATP-dependent RNA helicase DbpA [Idiomarina loihiensis L2TR]
 gi|56179531|gb|AAV82253.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 474

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 135/407 (33%), Positives = 213/407 (52%), Gaps = 9/407 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L L P ++  + + GY + TP+Q  ++P++L   D    A TG+GKT +F L +L
Sbjct: 21  LHFNQLNLPPALLTRLDEIGYQQMTPVQSLSLPVILNNTDAVVRADTGSGKTTAFALTLL 80

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             LE    +   P+ L+L PTRELA QVAD   K  K+      L +  G P   Q   L
Sbjct: 81  AKLEA---KSFSPQALVLCPTRELAHQVADEVRKLAKSMLNIKILTLCGGEPSRIQTNSL 137

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA VL+ TPGR+LDH  +  + ++ +  LV+DEADRML+MGF   +  I   +P TRQ
Sbjct: 138 EHGAHVLVGTPGRVLDHLEQRNVDLSMLTTLVLDEADRMLEMGFQDSLNAIVKHIPKTRQ 197

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    +        +       N  +   +         YA  ++  A L   L
Sbjct: 198 TLLFSATYPKNIAA----LAEQVTTKARNIEAIQEQAKPQIEQLFYAMNNEDSAQLVMNL 253

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 +N ++FCN K  V ++ ++L    FSV A+HG ++Q+ R + +  F  G+ +++
Sbjct: 254 LGDHQPENCLVFCNTKNEVKDIFNTLRANKFSVLALHGELEQKDRDQAIIQFSNGSARVL 313

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+A+RGLDI ++  V + ++ +  + + HRIGRTGRAG+ G A TL+A++D   +  
Sbjct: 314 IATDVASRGLDIAELDLVISVNMAHDLDTHTHRIGRTGRAGKEGVAITLIAEKDDYKMRL 373

Query: 360 IEKLIEKKVDWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           +E    + +       LS+  P    +   Q +  +K+   P    G
Sbjct: 374 LEDTFAEPIQVKPAPALSNNRPLKANMSTIQVSGGKKDKLRPGDIVG 420


>gi|322412436|gb|EFY03344.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 447

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 119/366 (32%), Positives = 185/366 (50%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ + G+V PT +Q + IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDYHFKQYIQQALEEIGFVNPTEVQQRLIPIVNSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNK 117
             L++ +A V++    I  P+RELA Q+ D  ++  K+    + L              K
Sbjct: 61  EKLDEAKAEVQVV---ITAPSRELATQIFDACKQIAKHSPKDIRLTNYVGGTDKLRQIEK 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++     V+DEAD  +DMGF+  +  I + +P +
Sbjct: 118 LKSSQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASLPKS 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  V+T  +      L   
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLSNPVIEQIKTETVIADTIDNWLVSTKGRDKNGQILEIL 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +   N K+   +L   L   G  V  IHG I  R R +I++  K+   +
Sbjct: 238 KTMQPYMAMLFV---NTKERADDLHAFLVANGLKVAKIHGGIPPRERKRIMNQVKKLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 KELEKM 360


>gi|320637247|gb|EFX07073.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           G5101]
          Length = 457

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 126/370 (34%), Positives = 200/370 (54%), Gaps = 9/370 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + +  Y+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELDYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +           SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFCETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 356

Query: 361 EKLIEKKVDW 370
             +++ K++W
Sbjct: 357 SDMLQIKLNW 366


>gi|170582010|ref|XP_001895938.1| ATP-dependent RNA helicase DDX18 [Brugia malayi]
 gi|158596969|gb|EDP35219.1| ATP-dependent RNA helicase DDX18, putative [Brugia malayi]
          Length = 547

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 115/404 (28%), Positives = 197/404 (48%), Gaps = 15/404 (3%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L   LS   + A+ + G+ K T IQ K I  +LQ  DV   A+TG+GKT +F++P 
Sbjct: 64  TFASLENILSESTLLAITEMGFTKMTEIQAKCIEPLLQGRDVIASAKTGSGKTLAFLIPA 123

Query: 60  LTILEKGRARVRMPRTLI-LEPTRELAAQVADN-FEKYGKNYNLTVALLIGGIPFEAQNK 117
           + +L K   + R    +I + PTREL+ Q      E   K+  LT  L++GG   +A+ +
Sbjct: 124 VELLIKLEWKARNGTGVIVISPTRELSMQTYGVLSEILAKHPTLTHGLIMGGANRQAEAQ 183

Query: 118 K-LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K     + ++      +    N    ++ N++ L+IDEADR+LD+GF   +Q I  ++P 
Sbjct: 184 KLARGVSFLVATPGRLLDHLQNTDGFMVKNLKCLIIDEADRILDIGFEIEMQQILRVLPK 243

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE-----TIEHCFVATYAQYSKK 231
            RQT+ FSAT T ++ ++ +  L            +        T+           S+K
Sbjct: 244 KRQTMFFSATQTPKVDELVKAALHTDPVKVGINKINPKNGSELATVSGLQQGYVVCPSEK 303

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             LL      ++  K  ++F +   +V      L     SV  IHG   Q+ R     +F
Sbjct: 304 RFLLLFTFLKKNRDKKVMVFFSSCNSVKYHHELLNYIDISVQCIHGKQKQQKRTCTFFSF 363

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVA 350
            +    +++ +D+AARGLDIP V  +  +D P+    YIHR+GRT R     G A  ++ 
Sbjct: 364 CQAKSGILLCTDVAARGLDIPQVDWIVQYDPPDEPREYIHRVGRTARGVTGTGHALLILR 423

Query: 351 KEDIKHIDAIE--KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
            E++  +  ++  K++  + ++    ++++   LEK+   +HN+
Sbjct: 424 PEELGFLRYLKHAKVLLNEYEFSWSKIANIQMQLEKL--IEHNY 465


>gi|227524|prf||1705300A ATP dependent RNA helicase
          Length = 604

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 138/419 (32%), Positives = 213/419 (50%), Gaps = 21/419 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F    L   ++  +  A + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+  
Sbjct: 143 EFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLKACAQTGSGKTGGFLFPVLS 202

Query: 60  ----------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                              R   P  +I+ PTRELA Q+ D  +K+     +   ++ GG
Sbjct: 203 ESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGG 262

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
            P   Q +++ERG D+L+ TPGR+ D   RGK+ + N++ LV+DEADRMLDMGF P I++
Sbjct: 263 SPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRH 322

Query: 170 ITSLVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I      T     QTL+FSAT   ++Q ++ +FL +   + V    ST+E I    +   
Sbjct: 323 IVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVE 382

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            Q  K   L      +       +IF   K+    L   L  Q F   AIHG+  Q  R 
Sbjct: 383 NQDKKSALLDLLSASTDG---LTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERE 439

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L+ F+ G   L+VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A
Sbjct: 440 RALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLA 499

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS--LNPPLEKIDIAQHNHARKNNPIPQK 402
                 E+   +  + +++ +    +   L    ++ P  + +  +    R NN   +K
Sbjct: 500 TAFFNSENSNIVKGLHEILTEANQEVPSFLKDAMMSAPGSRSNSRRGGFGRNNNRDYRK 558


>gi|225463083|ref|XP_002263640.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 635

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 135/475 (28%), Positives = 207/475 (43%), Gaps = 28/475 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LGLS +V+ AV + G   PT IQ   +P VL+   V   + TG+GKT +++LP++ 
Sbjct: 120 SFEELGLSEEVMAAVRETGISVPTEIQCIGVPAVLEGRSVVLGSHTGSGKTLAYMLPLVQ 179

Query: 62  ILEKGR------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +L +         + R PR ++L PTREL+ QV    +    +      ++ GG     Q
Sbjct: 180 LLRRDEALSGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 239

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-- 173
              L    D+++ TPGR+L H   G ++   I+ LV+DEAD M D GF P I+   +   
Sbjct: 240 EDSLNIPIDMVVGTPGRVLQHIEEGNMVYGEIKYLVLDEADTMFDRGFGPDIRKFLAPLK 299

Query: 174 ------VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
                      QT+L +ATMT  +QK+ +   Q    +  +T      +  H F+     
Sbjct: 300 NRASKSDDQGFQTVLVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGS 359

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
            +K  ALLQ L  S       ++FCN   +   + H L +        HG +    R++ 
Sbjct: 360 ENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLGENQIFTVNYHGEVPAEQRVEN 419

Query: 288 LSNFKEGTIQLMVASDLAARGLDIP-DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
           L  FK                  +  DV HV  FD P  + +Y+HR GRT R G  GK  
Sbjct: 420 LKKFKTEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 479

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
           +LVAK+D+     IE+ I K     N  L +L     + D+A+   +       QK+   
Sbjct: 480 SLVAKKDLLLATRIEEAIRK-----NESLEALTADNLRRDVARAKIS------EQKAKNA 528

Query: 407 DRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKL 461
           +  K   S QK+   ++  +  SK             G  G +      K   K+
Sbjct: 529 NLVK--VSKQKNKTKVESMKSSSKAASTQTSGRKTLGGKSGKVSPPTKSKKTVKI 581


>gi|2367402|gb|AAB69639.1| mitochondrial DEAD box protein [Trypanosoma brucei]
          Length = 546

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 125/434 (28%), Positives = 202/434 (46%), Gaps = 26/434 (5%)

Query: 3   FADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+DL  L   +   +  +G+   TPIQ  TIP++ + HD+ G+A TG+GKT +F +P L 
Sbjct: 119 FSDLDNLPDWLSKGLQSSGFSCTTPIQSYTIPVLDEGHDMIGLAPTGSGKTVAFAVPALK 178

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             +        PR ++L PTREL  Q A  F +      + V    GG P EAQ ++L  
Sbjct: 179 KFQWSPNGS--PRIVVLAPTRELVQQTAKVFHQLSSG-KVRVCERYGGAPREAQARRLHN 235

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ-- 179
           G DVL+  PGR+ D    G ++ + +  LV DEADR+LDMGF   + +I       R   
Sbjct: 236 GCDVLVACPGRLKDFLQNGDVIFDEVSFLVFDEADRLLDMGFKVQLDDILGYFSSHRPAQ 295

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+++SAT    ++++++ +L   + +  +  + T   +                 ++ L+
Sbjct: 296 TMMWSATWPPVVEQLAQEYLSQNRYVIRSGTAGTGLQVNENIKQHIFFADAPEERVKTLV 355

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLE----------KQGFSVCAIHGNIDQRSRMKILS 289
                 K           V     +                 +  +HG + QR R  I+ 
Sbjct: 356 SLIKEGKIDENTAKMMIFVERQTDTENAAYALARMLGIHSRCIGVVHGGMQQRQRDHIMG 415

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FKEG I+++VA+D+A+RGLD PDV  V N   P   ++Y HRIGRTGRAGR G++FT +
Sbjct: 416 IFKEGRIRILVATDVASRGLDFPDVTCVVNLIAPKNIDSYCHRIGRTGRAGRTGESFTFI 475

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA-QHNHARKNNPIPQKSTGFDR 408
            + D      +   +EK           ++ P   ++ A +H    +   + +   G  +
Sbjct: 476 GRSDGSLAKDLINYLEK---------CGMDVPQRLVEFAEEHAQGEEIKRMKRPWRGRQQ 526

Query: 409 RKKNYSSQKSHIPL 422
           R+    S+    P 
Sbjct: 527 REGRSQSRGGREPA 540


>gi|294929941|ref|XP_002779431.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239888539|gb|EER11226.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 863

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 121/364 (33%), Positives = 183/364 (50%), Gaps = 24/364 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  +  A+   GY +PTPIQ K IP++L   DV  +A+TG+GKTA+FV+PM   
Sbjct: 25  FQTMGLSDPLFKAIQKMGYNQPTPIQRKAIPVILGGSDVVAMARTGSGKTAAFVIPM-IQ 83

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             KG + V   R +IL PTRELA Q        GK  +L + L++GG   E+Q  +L   
Sbjct: 84  TLKGHSEVVGARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVGGHSMESQFDRLSSN 143

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVLICTPGR++ H     L +  ++ +V DEADR+ +MGF   +Q I    P +RQ LL
Sbjct: 144 PDVLICTPGRLVHHMVEADLSLQRVQYIVFDEADRLFEMGFSDDMQTILKATPPSRQCLL 203

Query: 183 FSATMTDELQKVSE-----------------------NFLQNPKRIEVNTPSSTAETIEH 219
           FSAT+  +L + S                        +        +    +  +   + 
Sbjct: 204 FSATLPSQLTQFSRAGLRSDSTEFIRLDVEHTISDTLDLWFLYTTADSKPAALISLLRKL 263

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
             +      S    +       +      I+F   + NV      L + G +   I+G++
Sbjct: 264 QSMGNANADSSTAVVAAGKGGKKAWSPKTIVFVATRHNVEFFASLLTQVGITNAPIYGSM 323

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
           DQ  R   LS F+ G   +++ +D+AARG+DIP + +V N+D P+ ++ ++HR GRT RA
Sbjct: 324 DQTQRTSSLSKFRSGKASVLLVTDVAARGIDIPQLDYVINYDFPSSSKLFVHRCGRTARA 383

Query: 340 GRHG 343
           G  G
Sbjct: 384 GAKG 387


>gi|146197867|dbj|BAF57644.1| eIF4A isoform 1A protein [Dugesia japonica]
          Length = 389

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 202/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +   G+ KP+ IQ + +   ++ HDV   AQ+GTGKTA+F + +L 
Sbjct: 17  SFDDMNLKEDLLRGIYAYGFEKPSAIQQRAVLPAIEGHDVIAQAQSGTGKTATFSVAILQ 76

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+    L+L PTRELA Q+       G          IGG   +     LE 
Sbjct: 77  RIDVTKNEVQA---LVLAPTRELAKQIHKVIIALGDYMGAKSYACIGGTRVQEDVGNLEN 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   RG L  N+I++ V+DEAD ML  GF   I ++   +    Q +
Sbjct: 134 GVHVIVGTPGRVNDMIERGNLKTNSIKMFVLDEADEMLSRGFKEQIHSVIQFIEHDTQIV 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P +I V     T E I   +V    +  K        L  
Sbjct: 194 LLSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEEDYKFET--LTDLYE 251

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L  SL+ + F V ++HG++ Q  R +I+  F+ G+ ++++ 
Sbjct: 252 TLTITQAVIFCNTRRKVDYLTESLKAKPFIVSSMHGDMQQDMRDQIMKEFRSGSSRILIT 311

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V ++DI+ +  +E
Sbjct: 312 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTQDDIRTLQDLE 371

Query: 362 KLIEKKVDWLNGDLSSL 378
                 ++ +  +++ L
Sbjct: 372 SYYSTHIEEMPMNIADL 388


>gi|66547453|ref|XP_624946.1| PREDICTED: DEAD-box helicase Dbp80 [Apis mellifera]
          Length = 475

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 104/395 (26%), Positives = 172/395 (43%), Gaps = 17/395 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  L L P ++  V   G+  P+ IQ   +P +L     ++   +Q+GTGKTA+FVL M
Sbjct: 89  SFDALHLKPALLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 148

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++        P+ L L PT ELA Q  +   K     N             ++  K+
Sbjct: 149 LSRVDTT---KNYPQVLCLSPTYELAIQTGEVAAKMSAFCNEIKIKYAVRGEEISRGTKV 205

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +   L      ++ +    +   G       I   +P T Q
Sbjct: 206 TEHIIIGTPGKVLDWAFKFKFFSLSKISVFVLDEADVMIATQGHQDQCIRIHKQLPRTCQ 265

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSAT   E+ K +E  + NP  I +     T + I+  +V       K  A+    +
Sbjct: 266 MMFFSATYEPEVMKFAEIIVNNPLIIRLLKEEETLDNIKQYYVKCKDLDEKYAAIT--NI 323

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   IIFC+ +K    L   + K G +V  + G +    R+ +L  F+ G  +++
Sbjct: 324 YGVITIGQAIIFCHTRKTANWLAEKMTKDGHAVAVLSGELTVEQRISVLDRFRAGLEKVL 383

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           + +++ ARG+D+  V  V NFD+P         E Y+HRIGR GR G+ G A  LV +  
Sbjct: 384 ITTNVLARGIDVEQVTIVVNFDLPMDQNRQADCETYLHRIGRAGRFGKSGIAINLVDSSH 443

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387
            ++    IEK   KK+ +L+ + +     +EKI +
Sbjct: 444 AMQICKDIEKHFAKKIKYLDTEDAD---EIEKIGV 475


>gi|307708913|ref|ZP_07645373.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
 gi|307620249|gb|EFN99365.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
          Length = 447

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 202/452 (44%), Gaps = 43/452 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F        +  A+ +  +  PT +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFTKFQFKNYIREALEELKFTTPTEVQDKLIPIVLVGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L++    V+     I  P+RELA Q+     +   + ++ V ++      +   +  +
Sbjct: 61  QQLDEASDSVQAV---ITAPSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKARQIEK 117

Query: 121 ---RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I   +P  
Sbjct: 118 LASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q ++FSAT+  +LQ   + +L NP   ++ T +  ++TI++  ++T  +          
Sbjct: 178 LQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQL- 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 237 --TQLMQPYLAMIFVNTKTRADELHAYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 358 DAIEKL-------------------------IEKKVDWLNGDLSSL---------NPPLE 383
             +EKL                          EKK D L+ ++  L             +
Sbjct: 355 RELEKLGIKFTPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKKKKVKPGYKK 414

Query: 384 KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
           KI  A     RK      ++ G   RK    +
Sbjct: 415 KIQWAVDEKRRKTKRTENRARGRAERKAKRQT 446


>gi|325271305|ref|ZP_08137840.1| ATP-dependent RNA helicase DbpA [Pseudomonas sp. TJI-51]
 gi|324103564|gb|EGC00876.1| ATP-dependent RNA helicase DbpA [Pseudomonas sp. TJI-51]
          Length = 461

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 134/405 (33%), Positives = 219/405 (54%), Gaps = 17/405 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L LS  ++  +   GY   TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 8   FATLPLSTAMLANLDALGYAAMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNP 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     R    + L+L PTRELA QVA    +  +  +    L +  G+    Q   LE 
Sbjct: 68  I---NPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEH 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H ++G L+++ +  LV+DEADRMLDMGF   I +I    P  RQTL
Sbjct: 125 GAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++ +F++NP++++V +  +  +  +        Q  +    +      
Sbjct: 185 LFSATYPAGIKQLAADFMRNPQQVKVESLHTDNQIEQRFIEIDPEQRLEAVTRVL----G 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ + FC  K+   ++   L  +G    A+HG+++QR R ++L+ F   +  ++VA
Sbjct: 241 HYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   AE ++HR+GRTGRAG  G A +LVA  +     AIE
Sbjct: 301 TDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGLAVSLVAPAEGHRAQAIE 360

Query: 362 KLIEKKVDWLNGDL------SSLNPPLEKIDIAQHNHARKNNPIP 400
           +L +  + W   D         L P +  + IA     RK+   P
Sbjct: 361 QLQKSPLRWDQLDSLKSKGGEPLLPVMSTLCIAA---GRKDKLRP 402


>gi|261251704|ref|ZP_05944278.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
 gi|260938577|gb|EEX94565.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
          Length = 412

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 137/424 (32%), Positives = 223/424 (52%), Gaps = 12/424 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L  S +++ A+   G+ KPT IQ   IP ++   DV  +A TG+GKT ++ LP+L
Sbjct: 1   MSFSTLSFSSELIHAL-PQGFQKPTDIQALAIPELMAGKDVLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++   + G+   L    L GG+  E Q + L 
Sbjct: 60  EKLKADTKQ----QALVLVPTRELAIQVSEALNQVGQTLGLNAVCLCGGVDKELQQQALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR++D      L ++ ++ LV+DEADR+LDMGF P +Q I S V   RQT
Sbjct: 116 DSPNILVATTGRLVDL-ANNGLDLSQVDYLVLDEADRLLDMGFWPDVQTIASQVSAKRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT +D+L++ ++  +  PK++  +  +ST + I             K  +      
Sbjct: 175 AMFSATFSDDLKQKAQQLMLAPKQVAAHQENSTNQDIAETLYLVNKGSKTKALIEL---I 231

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+T    ++F   K+N   L   L K G +  A+HGN  Q  R + L+ FK G   +++
Sbjct: 232 KQNTWSQVLVFIGAKENADGLAKKLNKAGITTNALHGNKSQVEREEALTLFKSGKTNVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   + + ++AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGKQGVAMSLVCHGETEALNAI 351

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
            +L ++  +    DL    P  +K    +   A ++    +++      K+     K   
Sbjct: 352 RQLTQR--ELATQDLEGF-PVTDKPSTGESKRAPRDKKANRRTNAKKSVKQFQGKPKRQA 408

Query: 421 PLKE 424
           P  +
Sbjct: 409 PRSK 412


>gi|153001334|ref|YP_001367015.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151365952|gb|ABS08952.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 427

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 141/419 (33%), Positives = 212/419 (50%), Gaps = 21/419 (5%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI-- 62
            LG+   ++  + +  YV PTP+Q  TIP VL   DV   A TG+GKTA+F +P+L    
Sbjct: 13  QLGIIAPLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLV 72

Query: 63  -LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNKKL 119
             +         R L+L PTRELA QVAD+F  Y  + N    +    GG+   AQ + L
Sbjct: 73  EAKTDDKTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQSL 132

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GADVL+ TPGR+LD  +   + +N +  LV+DEADRML +GF   +  +   +P  +Q
Sbjct: 133 RAGADVLVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQ 192

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +E+++++   L  P   ++ +     E                   L   L
Sbjct: 193 TLLFSATFPEEVRELTAKLLNAPLEYQLQS-----EQESTIHQRVITVNRPMKTALLAHL 247

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      +IF + K    +L   L K+G S    HG+  Q +R ++L  FK G I ++
Sbjct: 248 IKEHEWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVL 307

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI  +  V NFD+P    +Y+HRIGR+GRAG  G A TL++ ED  H   
Sbjct: 308 IATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGV 367

Query: 360 IE-----KLIEKKV------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407
           IE     KL+ +++      D +  +L     P+ K +       ++  P   +  G  
Sbjct: 368 IEKKNKLKLVREQIVGFEADDEMPAELLEQAKPVAKPEGMGKKKRKQLPPANAEFWGKK 426


>gi|120597828|ref|YP_962402.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120557921|gb|ABM23848.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 438

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 133/427 (31%), Positives = 213/427 (49%), Gaps = 12/427 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGL+  ++ A+       PT +Q   IP +L   DV  +AQTG+GKT +F LP+L
Sbjct: 20  LTFTKLGLNSALIKALPAM-LQCPTLVQQLAIPAILAGRDVLALAQTGSGKTLAFGLPLL 78

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGG--IPFEAQNK 117
             + + +A+  +     +L PTRELA QV    +   +  +  + +      +  + Q  
Sbjct: 79  QSVLEQQAQALITAQALVLVPTRELAQQVTLALQAVAQPLSGAMKIQTLCGGVDIDNQLI 138

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L     +L+ TPGRILD   +  + +++I+ LV+DEADR+L+MGF P +Q + +L+P  
Sbjct: 139 ELAERPQILVATPGRILDLCKQSHITLDSIKHLVLDEADRLLEMGFWPDVQKLIALMPKH 198

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTLLFSAT+ + L  ++   L N         +++        +    + SK  AL+  
Sbjct: 199 KQTLLFSATLPEALNTLASQLLINDPLRVQAHKANSVVPHIEEQLYLVNKGSKTQALIAL 258

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L Q Q      ++F + + +   +   L K G  V A+HG  DQ  R + L++FK   IQ
Sbjct: 259 LKQYQWP--QVLVFISARDDADAVAKRLAKAGMKVAALHGEKDQTVRSQTLADFKAKRIQ 316

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+DL ARG+ I  +  V N D+P  A  Y+HRIGRT RAG  G A +LV   ++  +
Sbjct: 317 ILVATDLMARGIHIDALPVVVNLDLPMSAPVYVHRIGRTARAGTKGLAISLVCHGEMATL 376

Query: 358 DAIEKLIEKKVDW-LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
             I  L E+ +   L  D    + P E     Q +  +     P +    +RR  N    
Sbjct: 377 TTIRGLTERALPLTLLADFPVTDKPSE-----QASDGKVERKRPPRDKQANRRSINKHKA 431

Query: 417 KSHIPLK 423
                 +
Sbjct: 432 SEFKGKR 438


>gi|297625843|ref|YP_003687606.1| hypothetical protein PFREUD_06320 [Propionibacterium freudenreichii
            subsp. shermanii CIRM-BIA1]
 gi|296921608|emb|CBL56162.1| Hypothetical protein PFREUD_06320 [Propionibacterium freudenreichii
            subsp. shermanii CIRM-BIA1]
          Length = 1043

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 130/432 (30%), Positives = 208/432 (48%), Gaps = 15/432 (3%)

Query: 3    FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
            F++LG+   +V  +   G + P PIQ   IP  L   DV G  QTG+GKT +F +P +  
Sbjct: 616  FSELGVPQPIVEELDSQGILAPFPIQQAAIPDALSGRDVLGRGQTGSGKTLAFGIPVITR 675

Query: 62   ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +   G    R PR L++ PTRELA QV D      K   L+  L+ GG+ +  Q + LER
Sbjct: 676  LAASGTGHGRQPRALLMAPTRELAQQVNDVLFPLAKAMGLSTILVAGGMSYTPQLRALER 735

Query: 122  GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            G D+++ TPGR++D   RG   +  ++ +V+DEAD M DMGF+P +  I   +    Q L
Sbjct: 736  GVDIVVATPGRLIDLIERGSAKLGEVQEVVLDEADEMADMGFMPDVTRILDEISREAQHL 795

Query: 182  LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            LFSAT+  ++  +   ++ +P    V++  ++  T+ H      A+              
Sbjct: 796  LFSATLDRQVDTIVRRYMHDPVEHGVDSAKASVTTMRHELWTVNARDKAAIIAQAA---- 851

Query: 242  QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             +     ++F   +++       L   G    A+HG + Q  R ++L  F++G + ++VA
Sbjct: 852  -NRPGRTLVFVRTQRDADRTAEQLRDLGLMAGALHGGLPQGMRARVLYAFRQGRVPVLVA 910

Query: 302  SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
            +D+AARG+D+ DV  V   D P+ +++Y+HR GRT RAG  G   TLV       +  I 
Sbjct: 911  TDVAARGIDVDDVSLVLQADPPHDSKDYLHRAGRTARAGEDGLVATLVLPRARGRMARIM 970

Query: 362  K---LIEKKVDWLNGD-LSSLNPPLEKIDIAQHNHARK-----NNPIPQKSTGFDRRKKN 412
            +   + E+      GD L  L    E  D        +       P+ ++  G  + K  
Sbjct: 971  RDAGVNERPHPMRPGDRLEELTGGTEPHDEPVREEQYRAIIAPPRPVKRRGGGHYKGKPW 1030

Query: 413  YSSQKSHIPLKE 424
               + S  P K 
Sbjct: 1031 QRRKSSGRPYKR 1042


>gi|170719699|ref|YP_001747387.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida W619]
 gi|169757702|gb|ACA71018.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 461

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 206/369 (55%), Gaps = 8/369 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L LS  ++  +   GY   TPIQ +++P++L+  D+   A+TG+GKTA+F + +L  
Sbjct: 8   FATLPLSAAMLANLDALGYASMTPIQAQSLPVILRGQDLIAQAKTGSGKTAAFGIGLLNP 67

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           +     R    + L+L PTRELA QVA    +  +  +    L +  G+    Q   LE 
Sbjct: 68  I---NPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEH 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI  H ++G L+++ +  LV+DEADRMLDMGF   I +I    P  RQTL
Sbjct: 125 GAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT    +++++ +F++ P++++V +  +  +  +        Q  +    +      
Sbjct: 185 LFSATYPAGIEQLAADFMRKPQQVKVESLHTDNQIEQRFIEIDPQQRLEAVTRVL----G 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
               ++ + FC  K+   ++   L  +G    A+HG+++QR R ++L+ F   +  ++VA
Sbjct: 241 HYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N ++   AE ++HR+GRTGRAG  G A +LVA  +     AIE
Sbjct: 301 TDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGIAVSLVAPAEGHRAQAIE 360

Query: 362 KLIEKKVDW 370
            L +  + W
Sbjct: 361 ALQKSPLRW 369


>gi|328771893|gb|EGF81932.1| hypothetical protein BATDEDRAFT_19098 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 839

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 128/448 (28%), Positives = 211/448 (47%), Gaps = 14/448 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           FA L LS      +    +V+ T IQ  ++P  L   DV G A+TG+GKT +F+LP +  
Sbjct: 64  FAQLPLSKPTQQGLSKCNFVQFTEIQKASLPFALCSRDVLGAAKTGSGKTLAFILPVLEV 123

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  +  +++     +I+ PTRELA Q+ D   K G+ ++L+  LLIGG   +++  ++ R
Sbjct: 124 LYRESWSQMDGVGAVIISPTRELALQIFDVLRKVGRYHSLSAGLLIGGKDLKSEQDRVAR 183

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +       + + +N+++LV+DEADR+LD GF   I  I + +P +RQTL
Sbjct: 184 MNILVCTPGRLLQHMDQTPEFICDNLKLLVLDEADRILDNGFEKTINAIIANLPKSRQTL 243

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   LQNP+ + V+  +  +               KK   +      
Sbjct: 244 LFSATQTKSVRDLARLSLQNPEYVAVHDNAEQSTPKNLIQKYLVCTLDKKL-DILFSFIK 302

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQG--FSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               +  ++F +  K V  +  +  K      +  +HG   Q  R+ I   +       +
Sbjct: 303 THLKQKILVFLSSCKQVRFVFETFCKMQPGMPLLCLHGKQKQAKRVAIFEQYCRKQGACL 362

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V   D P  A  YIHR+GRT R   HG+A  L+   +   +  
Sbjct: 363 FATDIAARGLDFPAVDWVVQVDCPEDAATYIHRVGRTARYESHGQALLLLLPSEKDAM-- 420

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +  L +KKV      ++    P + I I     A        K  G    +K +      
Sbjct: 421 LLSLEQKKVPITEIKVN----PSKTISIQSQLSALCTQSPDIKYLG----QKAFICYLRS 472

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRG 447
           I L+ ++ I  ++Q   +  A+SLG  G
Sbjct: 473 IYLQANKSIFNVEQMPVDLFAESLGLPG 500


>gi|238484739|ref|XP_002373608.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           flavus NRRL3357]
 gi|220701658|gb|EED57996.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           flavus NRRL3357]
          Length = 439

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 129/375 (34%), Positives = 207/375 (55%), Gaps = 5/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P+++  V   G+ +P+ IQ + I  +++  DV   AQ+GTGKTA+F +  L 
Sbjct: 25  SFDAMELKPELLRGVYAYGFERPSAIQQRAIKPIIKGSDVIAQAQSGTGKTATFSISALQ 84

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     V+  + LIL PTRELA Q+       G   N+T    IGG       K L  
Sbjct: 85  KLDPN---VKGCQALILAPTRELAQQIQKVVVAIGDFMNITCHACIGGTAVREDMKALGE 141

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G +V++ TPGR+ D   R  L  ++++  ++DEAD ML  GF   I +I  L+P + Q +
Sbjct: 142 GPEVVVGTPGRVHDMIQRRVLKTDHLKQFILDEADEMLSRGFTEQIYDIFQLLPQSTQVV 201

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 202 LLSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 259

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A
Sbjct: 260 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIA 319

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 320 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 379

Query: 362 KLIEKKVDWLNGDLS 376
           +    +++ +  +++
Sbjct: 380 QFYSTQIEEMPMNVA 394


>gi|50293589|ref|XP_449206.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74608568|sp|Q6FKN8|DBP5_CANGA RecName: Full=ATP-dependent RNA helicase DBP5
 gi|49528519|emb|CAG62178.1| unnamed protein product [Candida glabrata]
          Length = 504

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 97/373 (26%), Positives = 181/373 (48%), Gaps = 17/373 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +LGLSP+++  +    + KP+ IQ + +PL+L     ++   +Q+GTGKTA+F L M
Sbjct: 115 SFDELGLSPELLKGIYAMKFQKPSKIQERALPLLLSNPPRNMIAQSQSGTGKTAAFSLTM 174

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +++ +    +P+ + L P+RELA Q  +  ++ GK   +T  L++   P   +    
Sbjct: 175 LSRVDETQ---NVPQAICLAPSRELARQTLEVIQEMGKYTKITTQLIV---PDSFEKNTK 228

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V+      +     +   L N    ++ +  + +   G       +   +P   Q
Sbjct: 229 INANVVVGTPGTLLDLIRRKLIQLQNVKIFVLDEADNMLDKQGLGDQCIRVKKFLPKDTQ 288

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT  D ++  ++  + N   +E+       + I+  ++    +  K   L +   
Sbjct: 289 LVLFSATFADAVKAYAQKVIPNANTLELQRNEVNVKAIKQLYMDCNDEAHKYEVLCEL-- 346

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+ + IIF  +K     L   L+ +G  V  +H ++    R +++ +F+EG  +++
Sbjct: 347 YGLLTIGSSIIFVAKKDTANLLYGKLKHEGHQVSILHSDLRTDERDRLIDDFREGRSKVL 406

Query: 300 VASDLAARGLDIPDVGHVFNFDVPN------RAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           + +++ ARG+DIP V  V N+D+P           Y+HRIGRTGR GR G A + V  K+
Sbjct: 407 ITTNVLARGIDIPSVSMVVNYDLPTLPNGMPDYATYVHRIGRTGRFGRTGVAISFVHDKK 466

Query: 353 DIKHIDAIEKLIE 365
             K + AI+   +
Sbjct: 467 SFKILSAIQDYFK 479


>gi|242219333|ref|XP_002475447.1| predicted protein [Postia placenta Mad-698-R]
 gi|220725348|gb|EED79339.1| predicted protein [Postia placenta Mad-698-R]
          Length = 806

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 129/468 (27%), Positives = 212/468 (45%), Gaps = 25/468 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL +S      +  A +V  T IQ K++P+ L+  DV G A+TG+GKT +F++P+L 
Sbjct: 55  SFADLPVSGLTKRGLKKAFFVDMTDIQAKSLPVSLKGKDVLGAARTGSGKTLAFLVPVLE 114

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           IL + +   +     LI+ PTRELA Q+ D     G  ++ +  L+IGG   + + ++L 
Sbjct: 115 ILYRRKWGPQDGLGALIISPTRELAVQIFDVLRSIGGYHSFSAGLVIGGKNVKDERERLS 174

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++      +           +N+++LV+DEADR+LDMGF   +  + S +P  RQT
Sbjct: 175 RMNILVATPGRLLQHMDQTIGFECDNLQMLVLDEADRILDMGFQRTLSALLSHLPKARQT 234

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT TD +  ++   L++P  I V+   + +   +            +   L     
Sbjct: 235 LLFSATQTDSVSDLARLSLKDPVYIGVHDSDNASAMPKSLEQHYVLCTLDQKLDLLWSFL 294

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQL 298
                   ++F +  K V  +  +  +    V    +HG   Q +R+     F      +
Sbjct: 295 KSHLQSKVLVFLSSCKQVRFVFETFRRLHPGVPLLHLHGKQKQMTRLATFQRFTGMKHAV 354

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+AARGLD P V  V   D P  AE YIHR+GRT R    GK    +   +     
Sbjct: 355 LFATDIAARGLDFPAVNWVLQVDAPEDAETYIHRVGRTARYESAGKGLLFLMPSEE---- 410

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
                     + +   L+  +   EKI I         N +  ++  F   +  Y +Q++
Sbjct: 411 ----------EGMTQALAKKSITAEKIKIRASKTQSIENQL--QNLAFQDPEIKYLAQRA 458

Query: 419 HIP------LKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
            +       L++ + I K+ +   E  A++LG  G      L K   K
Sbjct: 459 FVSYLRSVHLQKDKSIFKVAELPAERFAEALGLPGMPKIKFLTKEMAK 506


>gi|17647335|ref|NP_524019.1| Gemin3 [Drosophila melanogaster]
 gi|5679086|gb|AAD46851.1|AF160911_1 BcDNA.LD05563 [Drosophila melanogaster]
 gi|7294824|gb|AAF50157.1| Gemin3 [Drosophila melanogaster]
          Length = 1028

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 107/452 (23%), Positives = 196/452 (43%), Gaps = 17/452 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L L   ++  +    +V PT IQ   IP+ L + D+   +++GTGKT  +V+ ++ 
Sbjct: 26  TFEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIYVIAVVQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                   +  P  +I+ PTRELA QV D F    K++         G    A+++K   
Sbjct: 86  SFNPN---INQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTDVAKDRKRMN 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + V+I TPGR+L  +      ++ + +LV+DEAD++     + +  +         + +
Sbjct: 143 ESRVIIGTPGRLLHLYENRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEAMPKNRQI 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ---- 237
           +  +   D+        + +   +  N+  +T       FV    Q +     ++     
Sbjct: 203 IACSATYDQNLDERLAKVMDKPMLISNSERATVLLGIRQFVYELPQQNNSVEEMRLKLQI 262

Query: 238 --LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              + +Q   +  IIF + +    +  + L   G     I G ++Q  R+ +   ++  T
Sbjct: 263 LGQIFNQLPYEQAIIFASSQMRADSYKNYLTASGIDCHLISGAMEQSERLHVFEGYRNFT 322

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDI 354
           ++++VA+DL ARG+D P    V N D P     Y+HRIGR GR G  G A T + +K++ 
Sbjct: 323 MRILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRFGSKGIAITFIASKKES 382

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN---HARKNNPIPQKSTGFDRRKK 411
           +    + K I      L      +       D  ++N   + ++ NP+ +        K+
Sbjct: 383 QRFREMSKKIATAWSVLEFPKEPMPNEFNFWDFEKYNFDYYIKEENPLQEMPMPI---KE 439

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQENDADSL 443
           N S +       + E + K  QD +  D D L
Sbjct: 440 NRSKENVDASSVDLENLQK-DQDGKRRDPDKL 470


>gi|146294034|ref|YP_001184458.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145565724|gb|ABP76659.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 438

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 133/427 (31%), Positives = 213/427 (49%), Gaps = 12/427 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  LGL+  ++ A+       PT +Q   IP +L   DV  +AQTG+GKT +F LP+L
Sbjct: 20  LTFTKLGLNSALIKALPAM-LQCPTLVQQLAIPAILAGRDVLALAQTGSGKTLAFGLPLL 78

Query: 61  TILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGG--IPFEAQNK 117
             + + +A+  +     +L PTRELA QV    +   +  +  + +      +  + Q  
Sbjct: 79  QSVLEQQAQALITAQALVLVPTRELAQQVTLVLQAVAQPLSGAMKIQTLCGGVDIDNQLI 138

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L     +L+ TPGRILD   +  + +++I+ LV+DEADR+L+MGF P +Q + +L+P  
Sbjct: 139 ELAERPQILVATPGRILDLCKQSHITLDSIKHLVLDEADRLLEMGFWPDVQKLIALMPKH 198

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +QTLLFSAT+ + L  ++   L N         +++        +    + SK  AL+  
Sbjct: 199 KQTLLFSATLPEALDTLASQLLINDPLRVQAHKANSVVPHIEEQLYLVNKGSKTQALIAL 258

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L Q Q      ++F + + +   +   L K G  V A+HG  DQ  R + L++FK   IQ
Sbjct: 259 LKQYQWP--QVLVFISARDDADAVAKRLAKAGMKVAALHGEKDQTVRSQTLADFKAKRIQ 316

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++VA+DL ARG+ I  +  V N D+P  A  Y+HRIGRT RAG  G A +LV   ++  +
Sbjct: 317 ILVATDLMARGIHIDALPVVVNLDLPMSAPVYVHRIGRTARAGTKGLAISLVCHGEMATL 376

Query: 358 DAIEKLIEKKVDW-LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
             I  L E+ +   L  D    + P E     Q +  +     P +    +RR  N    
Sbjct: 377 TTIRGLTERALPLTLLADFPVTDKPSE-----QASDGKVERKRPPRDKQANRRSINKHKA 431

Query: 417 KSHIPLK 423
                 +
Sbjct: 432 SEFKGKR 438


>gi|308370192|ref|ZP_07420594.2| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu002]
 gi|308378233|ref|ZP_07481964.2| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu009]
 gi|308380612|ref|ZP_07490534.2| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu011]
 gi|308406085|ref|ZP_07669502.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu012]
 gi|308325014|gb|EFP13865.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu002]
 gi|308353157|gb|EFP42008.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu009]
 gi|308360899|gb|EFP49750.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu011]
 gi|308364543|gb|EFP53394.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu012]
          Length = 524

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 145/381 (38%), Positives = 212/381 (55%), Gaps = 18/381 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LG+  ++V A+ + G  +P  IQ  T+PL L   DV G A+TG GKT +F +P+L 
Sbjct: 8   TFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQ 67

Query: 62  ILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKN--------------YNLTVA 104
            +  G         PR L++ PTREL  QV D+    GK                 L+V 
Sbjct: 68  RITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVV 127

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
            + GG P+E Q + L  GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+
Sbjct: 128 SIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFL 187

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           P I+ I   +P  RQ++LFSATM D +  ++  F+  P  I    P S+A          
Sbjct: 188 PDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVY 247

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
            A    K  L+ ++LQ++D     I     K+    +   L ++GF+V A+HG++ Q +R
Sbjct: 248 RAHALDKVELVSRVLQARDRGATMIFT-RTKRTAQKVADELTERGFAVGAVHGDLGQLAR 306

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            K L  F+ G I ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G 
Sbjct: 307 EKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGV 366

Query: 345 AFTLVAKEDIKHIDAIEKLIE 365
           A TLV  +++     I++ + 
Sbjct: 367 AVTLVDWDELPRWSMIDQALG 387


>gi|289571435|ref|ZP_06451662.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium
           tuberculosis T17]
 gi|289545189|gb|EFD48837.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium
           tuberculosis T17]
          Length = 489

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 145/381 (38%), Positives = 212/381 (55%), Gaps = 18/381 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LG+  ++V A+ + G  +P  IQ  T+PL L   DV G A+TG GKT +F +P+L 
Sbjct: 11  TFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQ 70

Query: 62  ILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKN--------------YNLTVA 104
            +  G         PR L++ PTREL  QV D+    GK                 L+V 
Sbjct: 71  RITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVV 130

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
            + GG P+E Q + L  GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+
Sbjct: 131 SIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFL 190

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           P I+ I   +P  RQ++LFSATM D +  ++  F+  P  I    P S+A          
Sbjct: 191 PDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVY 250

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
            A    K  L+ ++LQ++D     I     K+    +   L ++GF+V A+HG++ Q +R
Sbjct: 251 RAHALDKVELVSRVLQARDRGATMIFT-RTKRTAQKVADELTERGFAVGAVHGDLGQLAR 309

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            K L  F+ G I ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G 
Sbjct: 310 EKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGV 369

Query: 345 AFTLVAKEDIKHIDAIEKLIE 365
           A TLV  +++     I++ + 
Sbjct: 370 AVTLVDWDELPRWSMIDQALG 390


>gi|219559266|ref|ZP_03538342.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T17]
          Length = 508

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 145/381 (38%), Positives = 212/381 (55%), Gaps = 18/381 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LG+  ++V A+ + G  +P  IQ  T+PL L   DV G A+TG GKT +F +P+L 
Sbjct: 8   TFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQ 67

Query: 62  ILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKN--------------YNLTVA 104
            +  G         PR L++ PTREL  QV D+    GK                 L+V 
Sbjct: 68  RITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVV 127

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
            + GG P+E Q + L  GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+
Sbjct: 128 SIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFL 187

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           P I+ I   +P  RQ++LFSATM D +  ++  F+  P  I    P S+A          
Sbjct: 188 PDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVY 247

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
            A    K  L+ ++LQ++D     I     K+    +   L ++GF+V A+HG++ Q +R
Sbjct: 248 RAHALDKVELVSRVLQARDRGATMIFT-RTKRTAQKVADELTERGFAVGAVHGDLGQLAR 306

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            K L  F+ G I ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G 
Sbjct: 307 EKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGV 366

Query: 345 AFTLVAKEDIKHIDAIEKLIE 365
           A TLV  +++     I++ + 
Sbjct: 367 AVTLVDWDELPRWSMIDQALG 387


>gi|74006738|ref|XP_861475.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 9 [Canis familiaris]
          Length = 663

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 136/408 (33%), Positives = 214/408 (52%), Gaps = 27/408 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 241 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 300

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 301 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 360

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 361 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 420

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 421 WVEESDKRSFLLDLLNATGKDSL--TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           GK   LV  + +++I+  + L+    D L      +   LE +    H
Sbjct: 539 GKC--LVTFDGLRNINITKDLL----DLLVEAKQEVPSWLENMAYEHH 580


>gi|15610347|ref|NP_217727.1| ATP-dependent RNA helicase RhlE [Mycobacterium tuberculosis H37Rv]
 gi|15842798|ref|NP_337835.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           CDC1551]
 gi|121639098|ref|YP_979322.1| putative ATP-dependent RNA helicase rhlE [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148663072|ref|YP_001284595.1| ATP-dependent RNA helicase RhlE [Mycobacterium tuberculosis H37Ra]
 gi|148824410|ref|YP_001289164.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis F11]
 gi|167968329|ref|ZP_02550606.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis H37Ra]
 gi|215405221|ref|ZP_03417402.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           02_1987]
 gi|215413087|ref|ZP_03421788.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           94_M4241A]
 gi|215432173|ref|ZP_03430092.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis EAS054]
 gi|215447511|ref|ZP_03434263.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T85]
 gi|224991590|ref|YP_002646279.1| putative ATP-dependent RNA helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253800250|ref|YP_003033251.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           1435]
 gi|254233823|ref|ZP_04927148.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis C]
 gi|254365837|ref|ZP_04981882.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254552311|ref|ZP_05142758.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260188256|ref|ZP_05765730.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis CPHL_A]
 gi|260202366|ref|ZP_05769857.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T46]
 gi|260206559|ref|ZP_05774050.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis K85]
 gi|289444785|ref|ZP_06434529.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T46]
 gi|289448897|ref|ZP_06438641.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis CPHL_A]
 gi|289555487|ref|ZP_06444697.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           605]
 gi|289575929|ref|ZP_06456156.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis K85]
 gi|289747027|ref|ZP_06506405.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           02_1987]
 gi|289755331|ref|ZP_06514709.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis EAS054]
 gi|289759347|ref|ZP_06518725.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T85]
 gi|294993850|ref|ZP_06799541.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis 210]
 gi|297635860|ref|ZP_06953640.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           4207]
 gi|297732857|ref|ZP_06961975.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           R506]
 gi|298526689|ref|ZP_07014098.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           94_M4241A]
 gi|306777536|ref|ZP_07415873.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu001]
 gi|306786080|ref|ZP_07424402.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu003]
 gi|306790447|ref|ZP_07428769.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu004]
 gi|306794968|ref|ZP_07433270.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu005]
 gi|306799169|ref|ZP_07437471.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu006]
 gi|306805014|ref|ZP_07441682.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu008]
 gi|306809200|ref|ZP_07445868.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu007]
 gi|306973655|ref|ZP_07486316.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu010]
 gi|313660190|ref|ZP_07817070.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           V2475]
 gi|2072674|emb|CAB08305.1| PROBABLE ATP-DEPENDENT RNA HELICASE RHLE [Mycobacterium
           tuberculosis H37Rv]
 gi|13883125|gb|AAK47649.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           CDC1551]
 gi|121494746|emb|CAL73227.1| Probable ATP-dependent RNA helicase rhlE [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124599352|gb|EAY58456.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis C]
 gi|134151350|gb|EBA43395.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148507224|gb|ABQ75033.1| ATP-dependent RNA helicase RhlE [Mycobacterium tuberculosis H37Ra]
 gi|148722937|gb|ABR07562.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis F11]
 gi|224774705|dbj|BAH27511.1| putative ATP-dependent RNA helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253321753|gb|ACT26356.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           1435]
 gi|289417704|gb|EFD14944.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T46]
 gi|289421855|gb|EFD19056.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis CPHL_A]
 gi|289440119|gb|EFD22612.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           605]
 gi|289540360|gb|EFD44938.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis K85]
 gi|289687555|gb|EFD55043.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           02_1987]
 gi|289695918|gb|EFD63347.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis EAS054]
 gi|289714911|gb|EFD78923.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T85]
 gi|298496483|gb|EFI31777.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214084|gb|EFO73483.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu001]
 gi|308329234|gb|EFP18085.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu003]
 gi|308333066|gb|EFP21917.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu004]
 gi|308336752|gb|EFP25603.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu005]
 gi|308340590|gb|EFP29441.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu006]
 gi|308344527|gb|EFP33378.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu007]
 gi|308348323|gb|EFP37174.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu008]
 gi|308356899|gb|EFP45750.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu010]
 gi|323718078|gb|EGB27260.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           CDC1551A]
 gi|326902560|gb|EGE49493.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis W-148]
 gi|328459985|gb|AEB05408.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           4207]
          Length = 527

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 145/381 (38%), Positives = 212/381 (55%), Gaps = 18/381 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LG+  ++V A+ + G  +P  IQ  T+PL L   DV G A+TG GKT +F +P+L 
Sbjct: 11  TFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQ 70

Query: 62  ILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKN--------------YNLTVA 104
            +  G         PR L++ PTREL  QV D+    GK                 L+V 
Sbjct: 71  RITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVV 130

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
            + GG P+E Q + L  GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+
Sbjct: 131 SIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFL 190

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           P I+ I   +P  RQ++LFSATM D +  ++  F+  P  I    P S+A          
Sbjct: 191 PDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVY 250

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
            A    K  L+ ++LQ++D     I     K+    +   L ++GF+V A+HG++ Q +R
Sbjct: 251 RAHALDKVELVSRVLQARDRGATMIFT-RTKRTAQKVADELTERGFAVGAVHGDLGQLAR 309

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            K L  F+ G I ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G 
Sbjct: 310 EKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGV 369

Query: 345 AFTLVAKEDIKHIDAIEKLIE 365
           A TLV  +++     I++ + 
Sbjct: 370 AVTLVDWDELPRWSMIDQALG 390


>gi|315503693|ref|YP_004082580.1| dead/deah box helicase domain protein [Micromonospora sp. L5]
 gi|315410312|gb|ADU08429.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5]
          Length = 553

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 132/393 (33%), Positives = 211/393 (53%), Gaps = 12/393 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-L 60
            FA LG   + V A+  AG  +   IQ   +P+ L+  D+ G A TGTGKT  F +P+  
Sbjct: 22  TFAALGARQETVEALAAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGIPLLE 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +         +P+ L++ PTREL  QVA + +  G+   + V  + GG+ +E Q + L 
Sbjct: 82  RVFAPSEGSDGVPQALVVVPTRELGIQVAKDLDAAGRTRGVRVLPIYGGVAYEPQIEALR 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G ++L+ TPGR+LD   +  L ++ +  LV+DEADRMLD+GF+  ++ I +++P  RQT
Sbjct: 142 KGVEILVGTPGRLLDLQKQKHLRLDRVRALVLDEADRMLDLGFLDDVEKILAMLPEDRQT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM D +  +S  FL+ P  I     + T  + +   +A       K  ++ ++LQ
Sbjct: 202 MLFSATMPDPIVALSRRFLRRPVTIHAGHTAETGPSPQTTQLAYRTHSLNKVEIVARILQ 261

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      I    ++     +   L+ +GF+V A+HG++ Q +R + L  F+ G I  +V
Sbjct: 262 AEGRGLTMIFTRTKRA-ADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDTLV 320

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV N+D P   + Y HRIGRTGRAG  G A T V  +D+     I
Sbjct: 321 ATDVAARGIDVTGVTHVINYDCPEDQDTYTHRIGRTGRAGATGVAVTFVDWDDMPRWRII 380

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           +K +             +  P E    + H + 
Sbjct: 381 DKTLGL----------DMPEPPETYHTSAHLYT 403


>gi|302870034|ref|YP_003838671.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302572893|gb|ADL49095.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca
           ATCC 27029]
          Length = 553

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 132/393 (33%), Positives = 211/393 (53%), Gaps = 12/393 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-L 60
            FA LG   + V A+  AG  +   IQ   +P+ L+  D+ G A TGTGKT  F +P+  
Sbjct: 22  TFAALGARQETVEALAAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGIPLLE 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +         +P+ L++ PTREL  QVA + +  G+   + V  + GG+ +E Q + L 
Sbjct: 82  RVFAPSEGSDGVPQALVVVPTRELGIQVAKDLDAAGRTRGVRVLPIYGGVAYEPQIEALR 141

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G ++L+ TPGR+LD   +  L ++ +  LV+DEADRMLD+GF+  ++ I +++P  RQT
Sbjct: 142 KGVEILVGTPGRLLDLQKQKHLRLDRVRALVLDEADRMLDLGFLDDVEKILAMLPEDRQT 201

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM D +  +S  FL+ P  I     + T  + +   +A       K  ++ ++LQ
Sbjct: 202 MLFSATMPDPIVALSRRFLRRPVTIHAGHTAETGPSPQTTQLAYRTHSLNKVEIVARILQ 261

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      I    ++     +   L+ +GF+V A+HG++ Q +R + L  F+ G I  +V
Sbjct: 262 AEGRGLTMIFTRTKRA-ADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDTLV 320

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV N+D P   + Y HRIGRTGRAG  G A T V  +D+     I
Sbjct: 321 ATDVAARGIDVTGVTHVINYDCPEDQDTYTHRIGRTGRAGATGVAVTFVDWDDMPRWRII 380

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           +K +             +  P E    + H + 
Sbjct: 381 DKTLGL----------DMPEPPETYHTSAHLYT 403


>gi|238062179|ref|ZP_04606888.1| RNA helicase [Micromonospora sp. ATCC 39149]
 gi|237883990|gb|EEP72818.1| RNA helicase [Micromonospora sp. ATCC 39149]
          Length = 707

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 137/449 (30%), Positives = 220/449 (48%), Gaps = 14/449 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           +DFA LGL   +V A+   G   P PIQ  T+P  L   DV G  QTG+GKT +F LP +
Sbjct: 102 VDFAALGLPQPLVQALGRLGIATPFPIQRATVPDALAGRDVLGRGQTGSGKTLAFGLPVI 161

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + ++ RAR   PR L+L PTRELA QV D     GK   + +   +GG+P++ Q   L
Sbjct: 162 ARLAKRARARPLHPRALVLVPTRELAMQVNDALVPLGKAVGIFLKTAVGGVPYDRQIDAL 221

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG ++++ TPGR+ D  NRG   ++++E+ V+DEAD+M DMGF+P +  + +  P   Q
Sbjct: 222 RRGVEIVVATPGRLGDLINRGVCHLDDVEVTVLDEADQMADMGFLPEVTELLAKTPAGSQ 281

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT+  ++  + + F+ +P        ++   T++H  +                 
Sbjct: 282 RLLFSATLDGDVDSLVKRFMTDPVTHSTAPATAAVSTMDHHLLLIPPHDK-----FAVTA 336

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++F   +  V  L   L   G     +HG   QR R K L+ F+EG + ++
Sbjct: 337 SIAARAGRTMLFARTQLGVDRLVEQLAAVGVRAGGLHGGKTQRMRTKTLAEFREGRMSVL 396

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK-HID 358
           VA+D+AARG+ +  V  V + D P   ++Y+HR GRT RAG  G   TLV  +  +  + 
Sbjct: 397 VATDVAARGIHVDGVSLVLHVDPPKEPKDYLHRAGRTARAGESGAVATLVLPKQRRTTLA 456

Query: 359 AIEKL----IEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKK 411
            +EK      E +V   +  L+ L    E   +   + A   R++   P     F+ R +
Sbjct: 457 MLEKAGVEPAETRVRAGDPALAELTGAREPSGVPVRDEAPAPRRHGDRPSAPRRFEDRGE 516

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQENDA 440
                +     +  ++  + ++   +  A
Sbjct: 517 RRYGDRPTGERRYGDRDGRGERGFGDRPA 545


>gi|332528278|ref|ZP_08404283.1| DEAD/DEAH box helicase domain-containing protein [Hylemonella
           gracilis ATCC 19624]
 gi|332042298|gb|EGI78619.1| DEAD/DEAH box helicase domain-containing protein [Hylemonella
           gracilis ATCC 19624]
          Length = 570

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 126/457 (27%), Positives = 202/457 (44%), Gaps = 51/457 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL--------QRHDVCGIAQTGTGKTAS 54
           F +LGL+P+++ AV D GY +PT +Q + IPL L          +D+   +QTG+GKTA+
Sbjct: 31  FVELGLAPELIQAVADLGYTQPTAVQQRVIPLALPTHDPSHHGYNDLMVSSQTGSGKTAA 90

Query: 55  FVLPMLT---------------------------------------ILEKGRARVRMPRT 75
           F+LP+L                                               +  +P  
Sbjct: 91  FLLPVLHTLIQQQADAANREREEYERACADAAAKGEPAPKRHKRKDPTNPRNFKAAVPGA 150

Query: 76  LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           L+L PTRELA QVA +  +  K+        + G           + A +++ TPGR+LD
Sbjct: 151 LVLCPTRELAQQVAHDAIELVKHCRGLRIANVVGGMPYQLQIAKLQNAGLVVATPGRLLD 210

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195
                ++ ++ ++ LV+DEADRMLD+GF   +  I +L    RQT++FSAT    +Q+++
Sbjct: 211 LQRSMQIKLDQVQFLVVDEADRMLDLGFTDDLAEINALTANRRQTMMFSATFAPRIQQLA 270

Query: 196 ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL--QQLLQSQDTMKNGIIFCN 253
              + +                                             +   I+F +
Sbjct: 271 MRVMHDNGSQVKKVQIDAPHEKHANIKQVLHWADNFAHKRALLDHWLRDANIDQAIVFAS 330

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            +     L   L++ GF+  A+HG + Q  R + L   + G ++ +VA+D+AARG+D+P 
Sbjct: 331 TQVECDGLAADLQQAGFAAVALHGALSQGLRNRRLMALRSGQVKFLVATDVAARGIDVPT 390

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWL 371
           + HVFNF +P +AE+Y HRIGRTGRAGR G A T+    D + I  IE   ++  K + +
Sbjct: 391 ITHVFNFGLPMKAEDYTHRIGRTGRAGRDGIAVTIAEFRDRRKIGDIEFYTKQPFKAEAI 450

Query: 372 NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
            G       P  + +               +   F R
Sbjct: 451 PGLEPQQRMPSFRAERGDRGDRGDRQGRSDRGGSFGR 487


>gi|296447148|ref|ZP_06889079.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
 gi|296255313|gb|EFH02409.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
          Length = 447

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 158/447 (35%), Positives = 232/447 (51%), Gaps = 16/447 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL+  ++ A+   GYV PTPIQ + IP +L+  D+ GIAQTGTGKTA+F LP+L 
Sbjct: 3   KFADLGLAEVILRALAQEGYVAPTPIQAQAIPSLLEGRDLLGIAQTGTGKTAAFALPILH 62

Query: 62  ILEKGRARVRMPRTL--ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L   R R         +L PTRELAAQ+AD+F  YG+   ++V +++GG+    Q K L
Sbjct: 63  RLLDERRRPAPQTARALVLAPTRELAAQIADSFRSYGRFARMSVGVIVGGVGHGPQIKML 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G DVL+ TPGR+LDH   G L ++    +V+DEAD MLD+GF+  I+ I S +P  RQ
Sbjct: 123 ASGVDVLVATPGRLLDHIASGALRLDTTRTIVLDEADHMLDLGFLAPIRKIVSRLPKQRQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           +L FSATM  E+  ++ + L NP  ++V   ++TAE ++   +       +   +     
Sbjct: 183 SLFFSATMPKEIAALAADMLNNPVSVQVTPTATTAERVDQRVLLVDGAAKRDVLVELFAD 242

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            +       I+F   K+    +   LE  G    AIHGN  Q  RM+ L +F+ G  + +
Sbjct: 243 PALAC---AIVFTRTKRGADRVSQHLEAHGVGSAAIHGNKSQSQRMRALDDFRRGRTRAL 299

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+D+  V HV NF++P   E Y+HRIGRT RAG  G A +L    +   + A
Sbjct: 300 VATDIAARGIDVDGVTHVVNFELPETPEAYVHRIGRTARAGAGGAAISLCDNSERPLLRA 359

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           IEK   + +           P +++        A +    P+++    RR        S 
Sbjct: 360 IEKSTRQSL-----------PVVDRRSAQAGQQAGQEEGAPRRAPQEHRRPHEPRPDASR 408

Query: 420 IPLKESEKISKLQQDIQENDADSLGFR 446
            P   +    K     +       G  
Sbjct: 409 KPAGRAHAHGKPAAGGRPGKPSGAGRP 435


>gi|145596599|ref|YP_001160896.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           tropica CNB-440]
 gi|145305936|gb|ABP56518.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440]
          Length = 461

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 140/460 (30%), Positives = 216/460 (46%), Gaps = 19/460 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DFA LGL   +V  +   G   P  IQ  T+P  L   DV G  QTG+GKT +F LP+L
Sbjct: 9   VDFAALGLPQPLVRELARQGITTPFEIQRATMPDALAGRDVLGRGQTGSGKTLAFGLPLL 68

Query: 61  TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L  G   R R PR L+L PTRELA QV+D     G+   + +   +GG+P++ Q   L
Sbjct: 69  ARLANGERARPRHPRALVLVPTRELAMQVSDALFPLGRTIGVFLRTAVGGVPYDRQISSL 128

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            RG +VL+ TPGR+ D   RG   +++IE+ V+DEAD+M DMGF+P +  + +  P   Q
Sbjct: 129 RRGVEVLVATPGRLADLIERGVCRLDDIEVTVLDEADQMADMGFLPEVTELLAKTPADAQ 188

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT+  ++  +   F+ +P       P++  ET++H  +               + 
Sbjct: 189 RLLFSATLDKDVDALVRRFMTDPVTHSTAPPTAAVETMDHHLLLIPPHDK-----FSVVA 243

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++F   +  V  L   L   G     +HG   QR R + L+ F+EG   ++
Sbjct: 244 SIAAREGRTMVFARTQLGVDRLVGQLAAVGVRAGGLHGGKTQRMRTRTLAEFREGRTNVL 303

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK-HID 358
           VA+D+AARG+ +  V  V + D P   ++Y+HR GRT RAG  G   TL   +  +  + 
Sbjct: 304 VATDVAARGIHVDGVSLVLHVDPPKDPKDYLHRAGRTARAGETGAVATLALPKQRRGTLA 363

Query: 359 AIEKL----IEKKVDWLNGDLSSLNPPLEK--IDIAQHNHARKNNPIPQKSTGF-DRRKK 411
            +EK      + +V   +  L+ L    E   + +      R+    P     F DR ++
Sbjct: 364 MLEKAGVAPAQTRVRAGDPALAELTGAREPSGVPVPDEPEPRRRTGRPDGDRRFADRHRR 423

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
               +       +     +  +   E  +    F G   A
Sbjct: 424 GEPGRTG-----DRRHSGRPTEGRSERRSGDRRFGGRPAA 458


>gi|296197662|ref|XP_002746375.1| PREDICTED: spliceosome RNA helicase BAT1 [Callithrix jacchus]
          Length = 430

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 93/383 (24%), Positives = 162/383 (42%), Gaps = 11/383 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FVL  L  
Sbjct: 47  FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 106

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           LE    +V +             ++  + F KY  N  + V      I  + +  K    
Sbjct: 107 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP 166

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             V+      +    N+   L +    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 167 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 226

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT++ E++ V   F+Q+P  I V+  +         +        K   L        
Sbjct: 227 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL--LDV 284

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 +IF    +  + L   L +Q F   AIH  + Q  R+     FK+   +++VA+
Sbjct: 285 LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 344

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRI-----GR---TGRAGRHGKAFTLVAKE-D 353
           +L  RG+DI  V   FN+D+P  ++ Y+HR       R     R G  G A T V+ E D
Sbjct: 345 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRYYPLSPSRWPEQARFGTKGLAITFVSDEND 404

Query: 354 IKHIDAIEKLIEKKVDWLNGDLS 376
            K ++ ++   E  +  L  ++ 
Sbjct: 405 AKILNDVQDRFEVNISELPDEID 427


>gi|332263884|ref|XP_003280980.1| PREDICTED: ATP-dependent RNA helicase DDX19B [Nomascus leucogenys]
          Length = 472

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 98/382 (25%), Positives = 168/382 (43%), Gaps = 21/382 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+++  V   G+ +P+ IQ   +PL+L     ++   +Q+GTGKTA+FVL M
Sbjct: 93  SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 152

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +E      + P+ L L PT ELA Q     E+ GK Y               + +K+
Sbjct: 153 LSQVEPAN---KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 209

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +          ++ +    +   G       I  ++P   Q
Sbjct: 210 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 269

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K ++  + +P  I++     T +TI+  +V   ++  K  AL     
Sbjct: 270 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLY- 328

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                   G I   Q     ++  +       +           R  ++  F+EG  +++
Sbjct: 329 --------GAITIAQAMIFCHVRKTASWLAAELSKKXXXXXVEQRAAVIERFREGKEKVL 380

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  +V +K 
Sbjct: 381 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 440

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
            +  ++ I++   KK++ L+ D
Sbjct: 441 SMNILNRIQEHFNKKIERLDTD 462


>gi|320170440|gb|EFW47339.1| DEAD box RNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 662

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 124/398 (31%), Positives = 189/398 (47%), Gaps = 16/398 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   G    ++ A   AG+  PTPIQ +  P+ L   D+ GIA+TG+GKT +F LP +  
Sbjct: 239 FNQAGFPEDLLTAC--AGFASPTPIQSQCWPISLAGKDLIGIAKTGSGKTLAFALPSIIH 296

Query: 63  LEKGR-----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-------TVALLIGGI 110
           L         +  R P  L+L PTRELA Q A+ +     +              + GG+
Sbjct: 297 LRDQEALGKSSNQRGPVVLVLCPTRELAMQTAEVYANVASHTGKSSSSVALKTVCIFGGV 356

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
           P + Q  +L+ G  V++ TPGR+ D  + G + +  +  +++DEADRMLD+GF   I++I
Sbjct: 357 PKKQQLDQLKSGIHVIVATPGRLRDFIDSGDISLQRVSCVILDEADRMLDLGFEKDIRDI 416

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENF--LQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
              V   RQTL+FSAT    ++ +   F      +           + +           
Sbjct: 417 LGRVTKDRQTLMFSATWPSAIEAIGREFLAPDTVRVTIGGDELVANDAVTQHVEVLEPFA 476

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
                L              IIF   K+    +   L ++G+   AIHG+  Q  R   L
Sbjct: 477 KDARLLDLLQKHHSSRKNKVIIFVLYKQEAPRVEQMLLRKGWKSIAIHGDRSQADRTAAL 536

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             FK G + L++A+D+AARGLDIP+V +V N+  P   E+Y+HRIGRTGRAG+ G AFT 
Sbjct: 537 QAFKTGEVPLLIATDVAARGLDIPNVEYVINYTFPLTIEDYVHRIGRTGRAGKTGTAFTF 596

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
               D  H   +  ++ +    +   L      ++K +
Sbjct: 597 FTVNDKSHSGELVNVLRETNQAVPDALMKFGTHVKKKE 634


>gi|49119283|gb|AAH73332.1| LOC398189 protein [Xenopus laevis]
          Length = 727

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 108/371 (29%), Positives = 174/371 (46%), Gaps = 12/371 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+   LS + +  +   G     PIQ KT        DV   A+TGTGKT SF +P++ 
Sbjct: 148 DFSKFPLSKETIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVE 207

Query: 62  ILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L + +    R R PR +IL PT      +    E       L V+   GG P++ Q   
Sbjct: 208 KLNEDQQPLARGRAPRVIILTPT--RELAIQITNEIRSITKKLKVSCFYGGTPYQQQVFA 265

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++ G D L+ TPGR+ D     +L +  ++ +V+DE D M DMGF   ++ I S+     
Sbjct: 266 IKDGIDFLVGTPGRVRDLVQNYRLDLTTLKHVVLDEVDMMFDMGFSEQVEEILSVRYKAD 325

Query: 179 QTLL-----FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV--ATYAQYSKK 231
                    FSAT  D +  +++ +++            + +             +  K 
Sbjct: 326 PEENPQTLLFSATCPDWMYNMAKKYMRKQFEKIDLIGHRSQKAATTVEHLAIECTRSQKA 385

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L   +     +    IIFC+ K     L  S      S  ++HG++ Q+ R  +L  F
Sbjct: 386 AVLGDLVQVYSGSHGKTIIFCDSKLEAHTLATSCGSLKQSAKSLHGDLQQKEREVVLKGF 445

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           ++GT ++++A+++AARGLDIP+V  V  +  P  A+ Y+HR GRTGRAGR G   +L   
Sbjct: 446 RQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCISLYEP 505

Query: 352 EDIKHIDAIEK 362
            +  ++  +E+
Sbjct: 506 WERHYLRNVER 516


>gi|147899364|ref|NP_001082035.1| RNA helicase II/Gu [Xenopus laevis]
 gi|16975508|gb|AAG22819.2|AF302423_1 RNA helicase II/Gu [Xenopus laevis]
          Length = 759

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 108/371 (29%), Positives = 174/371 (46%), Gaps = 12/371 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+   LS + +  +   G     PIQ KT        DV   A+TGTGKT SF +P++ 
Sbjct: 180 DFSKFPLSKETIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVE 239

Query: 62  ILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L + +    R R PR +IL PT      +    E       L V+   GG P++ Q   
Sbjct: 240 KLNEDQQPLARGRAPRVIILTPT--RELAIQITNEIRSITKKLKVSCFYGGTPYQQQVFA 297

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++ G D L+ TPGR+ D     +L +  ++ +V+DE D M DMGF   ++ I S+     
Sbjct: 298 IKDGIDFLVGTPGRVRDLVQNYRLDLTTLKHVVLDEVDMMFDMGFSEQVEEILSVRYKAD 357

Query: 179 QTLL-----FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV--ATYAQYSKK 231
                    FSAT  D +  +++ +++            + +             +  K 
Sbjct: 358 PEENPQTLLFSATCPDWMYNMAKKYMRKQFEKIDLIGHRSQKAATTVEHLAIECTRSQKA 417

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L   +     +    IIFC+ K     L  S      S  ++HG++ Q+ R  +L  F
Sbjct: 418 AVLGDLVQVYSGSHGKTIIFCDSKLEAHTLATSCGSLKQSAKSLHGDLQQKEREVVLKGF 477

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           ++GT ++++A+++AARGLDIP+V  V  +  P  A+ Y+HR GRTGRAGR G   +L   
Sbjct: 478 RQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCISLYEP 537

Query: 352 EDIKHIDAIEK 362
            +  ++  +E+
Sbjct: 538 WERHYLRNVER 548


>gi|300120302|emb|CBK19856.2| unnamed protein product [Blastocystis hominis]
          Length = 563

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 113/401 (28%), Positives = 190/401 (47%), Gaps = 11/401 (2%)

Query: 1   MDF--ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           M F      L   ++  + ++ Y +PTPIQ+++IP+++Q  +  GI  TG+ KTA+++LP
Sbjct: 127 MPFRSDQSKLKETILQNIENSEYKEPTPIQMQSIPIIIQTREFLGIVPTGSVKTAAYLLP 186

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L             R +IL PT ELAAQV  +  + G+   +   +L        Q  K
Sbjct: 187 ILQRRNAHGTE--HIRAVILTPTLELAAQVHRHLLRLGERSGIKSKVLSKSTWPIFQEGK 244

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY-IQNITSLVPFT 177
                 +    P R++   +   + ++  EILV+DE D++ + GFI    + + +     
Sbjct: 245 QSIDCLIST--PLRLISAISASIIDLSQAEILVLDEGDKLFEDGFIEQIDEIMAACSNPR 302

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q LLFSAT+   ++ ++   L++P R+ V   ++T   +E   V    +  K  A+   
Sbjct: 303 LQRLLFSATLPQGVEAIARTVLRDPIRVIVGHKNTTTSDVEQSLVYCGNEEGKLIAIRNL 362

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L +  +     ++F   K     L   L     +V  IH ++   +R   ++ F+ G   
Sbjct: 363 LREGFEPPM--LVFVQSKDRARQLYTELAYDRVNVDVIHSDLSNLARTAAINRFRTGETW 420

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+DL  RGLD   +  V N+D P    +YIHRIGRTGRAGR GKA T   +ED   +
Sbjct: 421 VLIATDLLGRGLDFLGLNTVVNYDFPQSGVDYIHRIGRTGRAGRKGKAITFFTEEDKPML 480

Query: 358 DAIEKLIEKKVDWLNGDLSSLNP--PLEKIDIAQHNHARKN 396
            +I  ++      +   +  L      E   IA+H   R  
Sbjct: 481 RSIANVMNISGFEVPQWMLQLKKTNKRELKKIAKHGVKRDE 521


>gi|261327581|emb|CBH10557.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 843

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 120/384 (31%), Positives = 197/384 (51%), Gaps = 12/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL   ++  +L  GY  PTPIQ + IP ++Q +D+  +A+TG+GKTA+F++PML +
Sbjct: 28  FQSFGLEKPLLDGILRLGYNVPTPIQRRAIPPMMQGNDIVAMARTGSGKTAAFLIPMLHL 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  +++   R LIL PTREL+ Q+     +  K  +L    L+GG   E Q + L   
Sbjct: 88  L-KAHSKIVGVRGLILSPTRELSMQILRFGIQISKFLDLRFVALVGGNSLEQQFEMLASN 146

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGRIL       L ++ ++ +V+DEADR+ ++G  P I  I   +P + Q  L
Sbjct: 147 PDIVVATPGRILHIMEEASLQLSMVKSIVLDEADRLFELGLQPQIVAIMQKIPESCQRSL 206

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY---------SKKCA 233
           FSATM   L + +   L NP  + ++     ++ ++                    K   
Sbjct: 207 FSATMPSVLAEFTNAGLHNPVVLRLDAEMKLSDKLKQSAFFVRNDEKIAALIVLLKKVIG 266

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +     +S+   K  ++F   K +V  L   +E    S  A+HG +DQ  R   +  F +
Sbjct: 267 IEASDKKSESAEKQALVFVESKFHVDYLEAIMEAYHISCSAVHGQMDQEGRRNAVRAFAK 326

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
               +M+ +D+AARGLD+P + +V NF      + ++HR+GR  RAGR G A++++  ED
Sbjct: 327 RETSVMIVTDVAARGLDLPLLDNVVNFSFAPTPKLFVHRVGRVARAGRSGAAYSILTFED 386

Query: 354 IKHIDAIEKLIEKKVD--WLNGDL 375
             H   +   + + +      GDL
Sbjct: 387 FPHYVDLMAFLNRPLQCRKEPGDL 410


>gi|167464697|ref|ZP_02329786.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322381282|ref|ZP_08055285.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154858|gb|EFX47129.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 438

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 138/450 (30%), Positives = 229/450 (50%), Gaps = 20/450 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA LG+ P +   +   G + PTPIQ + IP +L+  DV G AQTGTGKT +F+LP+L  
Sbjct: 4   FAALGIDPPLTETLQKNGIITPTPIQKQAIPRILKGTDVIGKAQTGTGKTLAFILPLLQK 63

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           +      ++    +I           A+  +       + V  + GG   E Q  KL R 
Sbjct: 64  IRADAPHIQ--GLIITPTRELALQITAELKKLTAAMEQVRVLAVYGGQDVEGQMNKLRRN 121

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
             +++ TPGR+LDH  R  + ++    LV+DEAD+ML +GF+  ++ I + +   RQTLL
Sbjct: 122 VQIVVGTPGRLLDHIRRETIDLSRATALVLDEADQMLHIGFLGEVEEILAELSANRQTLL 181

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM  +++ +++ F+  P+ +E+     T + I            +    +   L  +
Sbjct: 182 FSATMPKQVRSLAKRFMHQPETVEIQARQITVKEI---RQLVVETTDRAKQRVLCTLLDE 238

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++FC  K+    L  +L+ +G+    +HG++ Q  R +++  F+E  + ++VA+
Sbjct: 239 YRPFLAMVFCRTKRRAGTLNQALQAKGYISDELHGDLSQAKREQVMKKFREARLHILVAT 298

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+  V HVFN+D+P+ AE+YIHRIGRTGRAG  G A TL A +D K+++ IEK
Sbjct: 299 DVAARGLDVEGVTHVFNYDIPHDAESYIHRIGRTGRAGGTGLAVTLAAPKDRKYLEQIEK 358

Query: 363 LI----EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            I    E+K+            P+++ +      + K    P K+      + N++ Q  
Sbjct: 359 GIHLTLERKIMPGPAFTQD-KIPVKREEGLHRTRSGKVGSRPAKN------RSNHAGQGR 411

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGN 448
                 S+  +   ++ +         RG 
Sbjct: 412 ----SRSKAPNGRTENRKRFAGKPSAKRGK 437


>gi|72387978|ref|XP_844413.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|62358560|gb|AAX79020.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
 gi|70800946|gb|AAZ10854.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
          Length = 843

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 120/384 (31%), Positives = 197/384 (51%), Gaps = 12/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F   GL   ++  +L  GY  PTPIQ + IP ++Q +D+  +A+TG+GKTA+F++PML +
Sbjct: 28  FQSFGLEKPLLDGILRLGYNVPTPIQRRAIPPMMQGNDIVAMARTGSGKTAAFLIPMLHL 87

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  +++   R LIL PTREL+ Q+     +  K  +L    L+GG   E Q + L   
Sbjct: 88  L-KAHSKIVGVRGLILSPTRELSMQILRFGIQISKFLDLRFVALVGGNSLEQQFEMLASN 146

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGRIL       L ++ ++ +V+DEADR+ ++G  P I  I   +P + Q  L
Sbjct: 147 PDIVVATPGRILHIMEEASLQLSMVKSIVLDEADRLFELGLQPQIVAIMQKIPESCQRSL 206

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY---------SKKCA 233
           FSATM   L + +   L NP  + ++     ++ ++                    K   
Sbjct: 207 FSATMPSVLAEFTNAGLHNPVVLRLDAEMKLSDKLKQSAFFVRNDEKIAALIVLLKKVIG 266

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           +     +S+   K  ++F   K +V  L   +E    S  A+HG +DQ  R   +  F +
Sbjct: 267 IEASDKKSESAEKQALVFVESKFHVDYLEAIMEAYHISCSAVHGQMDQEGRRNAVRAFAK 326

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
               +M+ +D+AARGLD+P + +V NF      + ++HR+GR  RAGR G A++++  ED
Sbjct: 327 RETSVMIVTDVAARGLDLPLLDNVVNFSFAPTPKLFVHRVGRVARAGRSGAAYSILTFED 386

Query: 354 IKHIDAIEKLIEKKVD--WLNGDL 375
             H   +   + + +      GDL
Sbjct: 387 FPHYVDLMAFLNRPLQCRKEPGDL 410


>gi|294630176|ref|ZP_06708736.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
 gi|292833509|gb|EFF91858.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
          Length = 510

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 134/365 (36%), Positives = 191/365 (52%), Gaps = 8/365 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L
Sbjct: 92  LTFADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTL 151

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  GR     PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LE
Sbjct: 152 ARLAGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALE 211

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVL+ TPGR+ D  NRG   + N+E+ V+DEAD+M D+GF+P +  +   +P   Q 
Sbjct: 212 RGVDVLVATPGRLRDIINRGACSLENVEVAVLDEADQMSDLGFLPEVTELLDQIPAGGQR 271

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM +E+  + + +L +P   EV++      T+ H  +       K          
Sbjct: 272 MLFSATMENEISTLVKRYLSDPVTHEVDSAQGNVTTMSHHILIV-----KPKDKAPVTAA 326

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   +     +   L   G    A+HG + Q +R + L++FK+G + ++V
Sbjct: 327 IASRKGRTIIFVRTQLGADRIAEQLRDAGVKADALHGGMTQGARTRTLADFKDGYVNVLV 386

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L      +    I
Sbjct: 387 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLSLPHQRRQ---I 443

Query: 361 EKLIE 365
            +L+E
Sbjct: 444 FRLME 448


>gi|301610486|ref|XP_002934777.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 3
           [Xenopus (Silurana) tropicalis]
          Length = 402

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 120/390 (30%), Positives = 189/390 (48%), Gaps = 53/390 (13%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG++  +       G+ +PT IQI+ IP+ LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 20  TFRELGVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQ 79

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G    +  A+++GGI   +Q+  L +
Sbjct: 80  TLLESPQRLY---ALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAK 136

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V+I TPGR++DH  N     +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 137 KPHVVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L++P +  V++   T E +           SK        + 
Sbjct: 197 FLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKL---QQFYVFIPSKFKDSYLVYIL 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N   +   L   GF+   +HG + Q                   
Sbjct: 254 NELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQ------------------- 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
                                      +YIHR+GRT RAGR GKA T V++ D++    I
Sbjct: 295 ---------------------------DYIHRVGRTARAGRSGKAITFVSQYDVELFQRI 327

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           E LI KK+         +    E++  AQ 
Sbjct: 328 EHLIGKKLPAFPTQEEEVMMLNERVSEAQR 357


>gi|269959250|ref|ZP_06173634.1| ATP-dependent RNA helicase, DEAD box family [Vibrio harveyi 1DA3]
 gi|269835952|gb|EEZ90027.1| ATP-dependent RNA helicase, DEAD box family [Vibrio harveyi 1DA3]
          Length = 436

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 142/424 (33%), Positives = 217/424 (51%), Gaps = 12/424 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS +++ A+    + KPT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 25  MPFSTLSLSSELIHALPK-DFKKPTDIQALAIPELLSGKDVLALANTGSGKTLAYGLPLL 83

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  +    IL PTRELA QV++   + G+   L    L GG+  E Q + L 
Sbjct: 84  EKLSVNPEQKAL----ILVPTRELATQVSEAINQVGQAIGLNAVCLCGGVDKETQLQALA 139

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ T GR++D  N G  L N    LV+DEADR+LDMGF P +QNI   +   RQT
Sbjct: 140 SDPHILVATTGRLVDLANNGLDLSNI-HYLVLDEADRLLDMGFWPDVQNIAGQISNQRQT 198

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT +DEL+  ++  +  PK++  +  +ST + I             K  +      
Sbjct: 199 AMFSATFSDELKGKAKQLMHAPKQVAAHQENSTNQDIAETLYLVNKGSKTKALIEL---I 255

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+T    ++F   K+N   L   L K G +  A+HGN  Q  R + L+ FK G  Q+++
Sbjct: 256 KQNTWTQVLVFIGAKENADGLAKKLNKAGITTNALHGNKSQVEREEALAQFKSGQTQVLI 315

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG  G A +LV   + + + AI
Sbjct: 316 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVAMSLVCHGEAEALTAI 375

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
             L ++++     DL    P  +K    +   A ++    +++      K+     K   
Sbjct: 376 RNLTQRELP--TQDLEGF-PVTDKPSTGESKRAPRDKKANRRTNAKKSIKQFQGKPKRQA 432

Query: 421 PLKE 424
           P  +
Sbjct: 433 PKAK 436


>gi|221068762|ref|ZP_03544867.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
 gi|220713785|gb|EED69153.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
          Length = 707

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 123/413 (29%), Positives = 202/413 (48%), Gaps = 48/413 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-------DVCGIAQTGTGKTASF 55
           F +LGL+P++V AV D GY +PT +Q K IPL +          D+   +QTG+GKTA+F
Sbjct: 58  FVELGLAPELVQAVADLGYTQPTQVQQKAIPLAMGEAADASGFIDLMVSSQTGSGKTAAF 117

Query: 56  VLPMLT---------------------------------------ILEKGRARVRMPRTL 76
           +LP+L                                               +  +P  L
Sbjct: 118 LLPVLHTLIEQRAQADADAKAEFERLCAEATAKGEPVPKRNKRKDPTNSRNFKAAVPGAL 177

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           +L PTRELA QVA +  +  K+        + G           + AD+++ TPGR+LD 
Sbjct: 178 VLCPTRELAQQVAHDAIELVKHCRGIRIANVVGGIPYQLQIAKLQNADLVVATPGRLLDL 237

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
               ++ ++ ++ LV+DEADRMLD+GF   +  +  +    +QT++FSAT    +Q+++ 
Sbjct: 238 QRSMQIKLDKVQFLVVDEADRMLDLGFSDDLAEVNVMTAQRKQTMMFSATFAPRVQQLAM 297

Query: 197 NFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
             + +      +V   +   +      V  +A  ++    +        ++   I+F + 
Sbjct: 298 RVMHDNGSGVKKVTVDTPQEKHASIKQVLFWADNAQHKRKMLDHWLRDSSINQAIVFAST 357

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           +     L   L++ GFS  A+HG + Q  R + L   + G +Q++VA+D+AARG+D+P +
Sbjct: 358 QVECDGLATDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPTI 417

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
            HVFN+ +P +AE+Y HRIGRTGRAGR G A T     D + +  IE    ++
Sbjct: 418 THVFNYGLPMKAEDYTHRIGRTGRAGREGTAVTFAEFRDRRRVFDIEGYTRQQ 470


>gi|38566158|gb|AAH62498.1| ddx47-prov protein [Xenopus (Silurana) tropicalis]
          Length = 401

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 120/390 (30%), Positives = 189/390 (48%), Gaps = 53/390 (13%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG++  +       G+ +PT IQI+ IP+ LQ  D+ G+A+TG+GKT +F LP+L 
Sbjct: 19  TFRELGVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQ 78

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L +   R+     L+L PTRELA Q+++ FE  G    +  A+++GGI   +Q+  L +
Sbjct: 79  TLLESPQRLY---ALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAK 135

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              V+I TPGR++DH  N     +  ++ LV+DEADR+L+M F   +  I  ++P  R+T
Sbjct: 136 KPHVVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 195

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATMT ++QK+    L++P +  V++   T E +           SK        + 
Sbjct: 196 FLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKL---QQFYVFIPSKFKDSYLVYIL 252

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++    + +IFC+   N   +   L   GF+   +HG + Q                   
Sbjct: 253 NELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQ------------------- 293

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
                                      +YIHR+GRT RAGR GKA T V++ D++    I
Sbjct: 294 ---------------------------DYIHRVGRTARAGRSGKAITFVSQYDVELFQRI 326

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           E LI KK+         +    E++  AQ 
Sbjct: 327 EHLIGKKLPAFPTQEEEVMMLNERVSEAQR 356


>gi|254584210|ref|XP_002497673.1| ZYRO0F10934p [Zygosaccharomyces rouxii]
 gi|238940566|emb|CAR28740.1| ZYRO0F10934p [Zygosaccharomyces rouxii]
          Length = 603

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 134/394 (34%), Positives = 205/394 (52%), Gaps = 19/394 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
           +F    L   ++  +  A +VKPTP+Q  +IP+V  + D+   AQTG+GKT  F+ P   
Sbjct: 134 EFTSPPLDELLLENIKFAHFVKPTPVQKYSIPIVANKRDLMACAQTGSGKTGGFLFPVLS 193

Query: 59  ---------MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                    +         R   P  ++L PTRELA Q+ D  +K+     +   ++ GG
Sbjct: 194 ESFFTGPSEIPEAARSSYMRKAFPTAVVLAPTRELATQIFDEAKKFTYRSWVRPTVVYGG 253

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
               +Q + L+RG D+L+ TPGR+ D   RGK+ +  ++ LV+DEADRMLDMGF P I+N
Sbjct: 254 SDVGSQMRDLDRGCDLLVATPGRLNDLLERGKISLAKVKYLVLDEADRMLDMGFEPQIRN 313

Query: 170 ----ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
                       RQTL+FSAT   ++Q ++ +FL +   + V    ST+E I    +   
Sbjct: 314 IVEGCDMPGVDQRQTLMFSATFPVDIQHLARDFLSDYIFLSVGRVGSTSENITQRVLYVE 373

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            +  K   L      S  +    +IF   K+    L   L  Q F   AIHG+  Q  R 
Sbjct: 374 DEDKKSALLDLL---SASSGGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERE 430

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L +FK G   L+VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G A
Sbjct: 431 RALGSFKTGKADLLVATAVAARGLDIPNVTHVINYDLPGDVDDYVHRIGRTGRAGNTGLA 490

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
              + + +   +  + +++ +    +   L+ L+
Sbjct: 491 TAFLNRGNKNVVKGLIEILSEANQEVPSFLNDLS 524


>gi|255589747|ref|XP_002535074.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223524093|gb|EEF27309.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 465

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 128/343 (37%), Positives = 192/343 (55%), Gaps = 5/343 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ LGL+P ++ A+ + GY +PT IQ   IP +L+  DV G AQTG+GKTA+F LP+L
Sbjct: 3   MSFSTLGLAPSLLNAIAEIGYDEPTAIQRAAIPAILRGEDVLGAAQTGSGKTAAFALPLL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKK 118
             L   R   R    L+L PTRELA QV ++  K   +    + VA++ GG+    Q   
Sbjct: 63  QSLLDNRDGPRQLHGLVLVPTRELAVQVGESIRKLVSHLSMPVKVAIVFGGVSINPQMMA 122

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  GAD+++ TPGR+LD  +   L ++   +LV+DEADR+LD+GF   +  I +L+P  R
Sbjct: 123 LRGGADIVVATPGRLLDLIDHNALKISRAAMLVLDEADRLLDLGFSEELNRILALLPKQR 182

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q L FSAT    +QK++++ L  P RIEV +  ++   I    +A               
Sbjct: 183 QNLFFSATFPPAVQKLADSILHQPARIEVLSEPASKPDIVQRAIAVDVPRRTMLLKHLIQ 242

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                 +   +       +V +    L + G    + HG + Q +R + L++F+ G +Q 
Sbjct: 243 EHQWRGVMVFVATKYAADHVAD---KLNRNGIRAASFHGELSQGARTETLTDFRSGRLQA 299

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           +VA+D+AARG+DI  +  V N+D+P  A +Y HRIGRTGRA R
Sbjct: 300 LVATDVAARGIDIARLPAVVNYDLPRSAVDYTHRIGRTGRAAR 342


>gi|3342758|gb|AAC27683.1| helicase pitchoune [Drosophila melanogaster]
          Length = 663

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 112/392 (28%), Positives = 199/392 (50%), Gaps = 9/392 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L   +S   + A+ + G+ + T IQ K++  +L+  D+ G AQTG+GKT +F++P 
Sbjct: 169 SFASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPA 228

Query: 60  LTILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K R   R     +I+ PTREL+ Q     ++   +++ T  L++GG   + +++K
Sbjct: 229 VELINKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEK 288

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G ++L+ TPGR +    N    L  N++ L+IDE DR+L++GF   ++ I +L+P  
Sbjct: 289 LGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKR 348

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T  ++ +S+  L++         +    T++          S+K  L+  
Sbjct: 349 RQTMLFSATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLF 408

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V             V +IHG   Q  R      F      
Sbjct: 409 TFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESG 468

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
           +++ +D+AARGLDIP V  +  +D P    + IHR+GRT R  G  G A  L+  E++  
Sbjct: 469 ILLCTDVAARGLDIPQVDWIVQYDPPGDQASIIHRVGRTARGSGTSGHALLLMRPEELGF 528

Query: 357 IDAIEKLIEKKVDWLN---GDLSSLNPPLEKI 385
           +  + K  +  ++        ++ +   LEK+
Sbjct: 529 LRYL-KAAKVPLNEFEFSWQKIADIQLQLEKL 559


>gi|50549245|ref|XP_502093.1| YALI0C21472p [Yarrowia lipolytica]
 gi|74659998|sp|Q6CB69|DED1_YARLI RecName: Full=ATP-dependent RNA helicase DED1
 gi|49647960|emb|CAG82413.1| YALI0C21472p [Yarrowia lipolytica]
          Length = 618

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 129/392 (32%), Positives = 201/392 (51%), Gaps = 20/392 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59
           F    L   ++  +  A Y KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+   
Sbjct: 162 FTSPPLEEHLLTNIKLARYNKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSQ 221

Query: 60  ----------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                          +   +   P  L+L PTREL +Q+ D  +K+     +   ++ GG
Sbjct: 222 SFFHGPSPTPQPTGPRHMHKKAYPTALVLAPTRELVSQIYDEAKKFAYRSWVRPCVVYGG 281

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q + +ERG D+L+  PGR++D  +RGK+ + NI+ LV+DEADRMLDMGF P I+ 
Sbjct: 282 ADIGEQMRNIERGCDLLVAAPGRLVDLIDRGKVSLENIKYLVLDEADRMLDMGFEPQIRA 341

Query: 170 IT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I           RQTL+FSAT    +Q ++ +FL++   + V    ST+E I        
Sbjct: 342 IVQGSGMPDVNERQTLMFSATFPRNIQMLARDFLKDYIFLSVGRVGSTSENI---TQKVE 398

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
                        + S       ++F   K+    LC  L+ + F   +IHG+  QR R 
Sbjct: 399 YVEDGDKISALLDILSAAGKGLTLVFVETKRGADYLCDVLQSEDFPATSIHGDRSQRDRE 458

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L  F++GT  ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG  G A
Sbjct: 459 RALEMFRDGTTPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIA 518

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
                + +   +  +  ++++    +   L S
Sbjct: 519 TAFFNRGNKGIVRELIDILKEAHQDVPQFLES 550


>gi|295671282|ref|XP_002796188.1| ATP-dependent RNA helicase DBP8 [Paracoccidioides brasiliensis
           Pb01]
 gi|226284321|gb|EEH39887.1| ATP-dependent RNA helicase DBP8 [Paracoccidioides brasiliensis
           Pb01]
          Length = 543

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 121/383 (31%), Positives = 186/383 (48%), Gaps = 17/383 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL+P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F  P+L 
Sbjct: 114 SFATLGLAPWLVGSLSAMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAFAAPILQ 173

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +          ++L PTRELA Q+ +  +      +L   L+ GG     Q   L +
Sbjct: 174 KWSE---DPLGIFAVVLTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIALSQ 230

Query: 122 GADVLICTPGRILDHFN----RGKLLMNNIEILVIDEADRMLDMG---FIPYIQNITSLV 174
              V+I TPGR+ DH N         +N    +V+DEADR+L+ G    +P ++   S +
Sbjct: 231 RPHVVIATPGRLADHINSSGRDTICGLNRARFVVLDEADRLLESGPGSMLPDLETCLSAL 290

Query: 175 PFTRQTLL--FSATMTDEL-----QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
           P +       F+AT+T E+          +              +T              
Sbjct: 291 PPSTARQTLLFTATVTPEVRALKSMPRPASKPPIFVTEISTENQATIPRTLKQSYLLVPL 350

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             ++  L   L    ++ K  IIFCN+ K    L   L + G    ++H  + Q  R   
Sbjct: 351 THREAFLHVLLSTEGNSSKAAIIFCNRTKTADLLERMLRRLGHRATSLHSLLPQSERTAN 410

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           LS F+     ++VA+D+AARGLDIP V  V NFDVP   ++Y+HR+GRT RAGR G+A T
Sbjct: 411 LSRFRASAAPILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGREGEAVT 470

Query: 348 LVAKEDIKHIDAIEKLIEKKVDW 370
           LV + D++ + AIE  + +K++ 
Sbjct: 471 LVGQRDVQLVLAIEDRVGRKMEE 493


>gi|328876405|gb|EGG24768.1| DEAD-box RNA helicase [Dictyostelium fasciculatum]
          Length = 460

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 92/381 (24%), Positives = 165/381 (43%), Gaps = 15/381 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60
            F +LGL P+++  V   GY KP+ IQ  ++P+++Q   ++   +Q+GTGKTA+F L ML
Sbjct: 66  SFEELGLKPEILKGVYAMGYNKPSKIQENSLPIIIQSSENLIAQSQSGTGKTAAFTLGML 125

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +++       P+T+ + P++ELA Q+ +  +K G+   +   L+I  +          
Sbjct: 126 NCVDETIQE---PQTICICPSQELAVQIFEVVKKLGQFTTIKPILVIKEVDLPRTI---- 178

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++      I     R   L     +++ +    +   G     + I  L+P   + 
Sbjct: 179 TNQIIIGTPGRLIDCIGRRQIGLRKMKMLVLDEADHMIGVRGMTEQSERIKDLLPKGIKI 238

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT +  +   ++ ++  P+          +      F       S K  +L  +  
Sbjct: 239 LLFSATFSSSVDNYTKQYVPEPRVSIRLKREQLSVDKILQFYIDCESPSNKPHILSDIYA 298

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                ++ +     +          E                 R   L+NFK G  ++++
Sbjct: 299 YISVGQSIVFVHTIETAKSLANKMREDGHSVSLLFGQGNTTEQRFAELNNFKLGKTKVLI 358

Query: 301 ASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLVAKE-D 353
            +++ ARG+DI  V  V N+D+P           Y+HR+GR GR GR G A +LVA E D
Sbjct: 359 TTNVLARGIDILQVSLVINYDMPLDENERPDPVLYLHRVGRVGRFGRSGVAISLVANEHD 418

Query: 354 IKHIDAIEKLIEKKVDWLNGD 374
            K +  I + +++ V  L  D
Sbjct: 419 KKKLMNIAEHLQRPVKELKKD 439


>gi|71756075|ref|XP_828952.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70834338|gb|EAN79840.1| mitochondrial DEAD box protein [Trypanosoma brucei]
 gi|261334879|emb|CBH17873.1| KREH1 [Trypanosoma brucei gambiense DAL972]
          Length = 546

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 125/434 (28%), Positives = 202/434 (46%), Gaps = 26/434 (5%)

Query: 3   FADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+DL  L   +   +  +G+   TPIQ  TIP++ + HD+ G+A TG+GKT +F +P L 
Sbjct: 119 FSDLDNLPDWLSKGLQSSGFSCTTPIQSYTIPVLDEGHDMIGLAPTGSGKTVAFAVPALK 178

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             +        PR ++L PTREL  Q A  F +      + V    GG P EAQ ++L  
Sbjct: 179 KFQWSPNGS--PRIVVLAPTRELVQQTAKVFHQLSSG-KVRVCEAYGGAPREAQARRLHN 235

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ-- 179
           G DVL+  PGR+ D    G ++ + +  LV DEADR+LDMGF   + +I       R   
Sbjct: 236 GCDVLVACPGRLKDFLQNGDVIFDEVSFLVFDEADRLLDMGFKVQLDDILGYFSSHRPAQ 295

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+++SAT    ++++++ +L   + +  +  + T   +                 ++ L+
Sbjct: 296 TMMWSATWPPVVEQLAQEYLSQNRYVIRSGTAGTGLQVNENIKQHIFFADAPEERVKTLV 355

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLE----------KQGFSVCAIHGNIDQRSRMKILS 289
                 K           V     +                 +  +HG + QR R  I+ 
Sbjct: 356 SLIKEGKIDENTAKMMIFVERQTDTENAAYALARMLGIHSRCIGVVHGGMQQRQRDHIMG 415

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FKEG I+++VA+D+A+RGLD PDV  V N   P   ++Y HRIGRTGRAGR G++FT +
Sbjct: 416 IFKEGRIRILVATDVASRGLDFPDVTCVVNLIAPKNIDSYCHRIGRTGRAGRTGESFTFI 475

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA-QHNHARKNNPIPQKSTGFDR 408
            + D      +   +EK           ++ P   ++ A +H    +   + +   G  +
Sbjct: 476 GRSDGSLAKDLINYLEK---------CGMDVPQRLVEFAEEHAQGEEIKRMKRPWRGRQQ 526

Query: 409 RKKNYSSQKSHIPL 422
           R+    S+    P 
Sbjct: 527 REGRSQSRGGREPA 540


>gi|325126224|gb|ADY85554.1| RNA helicase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 453

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 129/444 (29%), Positives = 210/444 (47%), Gaps = 17/444 (3%)

Query: 1   MD--FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           M+  F D  L  ++   +   G+ KPTP+Q K IP +L+   V   A TG+GKT ++++P
Sbjct: 1   MNNIFTDTRLRSEIRQGLAKIGFTKPTPVQEKVIPAMLKGESVIAQAATGSGKTHAYLIP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L  +++    V+   T       +   +VA               L  G        + 
Sbjct: 61  ILNAIDEDARYVQAIVTAPSRELADQLYRVARQLRDNSGLNIAIAHLAGGSDRDRQIARF 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +    ++I TPGR+LD  ++  LL++ ++  VIDEAD  LD+GF+  +  I + +P   
Sbjct: 121 EQNKPQLVIATPGRLLDFADKKILLLDQVKNFVIDEADMTLDLGFLADVDKIAARLPKDV 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
               FSAT+  +L      ++  P+ I ++ P+  A TI++  +   ++  KK       
Sbjct: 181 VMSAFSATIPVKLTNFLRKYMAKPEEIVIDNPAVIAPTIKNDLLDIGSKDRKKIVYKLL- 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +       ++F N K+ V  L   L KQG  V  IHG+I +R R + L   + G  Q 
Sbjct: 240 --TMGQPYLALVFANTKQMVDELADYLTKQGLKVAKIHGSITERERKRTLREVRAGQYQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARG+D+P V  V N+++P   E  IHRIGRTGR G  G A TLV +E++  + 
Sbjct: 298 VVASDLAARGIDLPGVSLVINYEIPKDLEFIIHRIGRTGRNGLPGHAVTLVREEEMNRVG 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           A+E  +    D++     +L P           H R+ +     +   D   K     K 
Sbjct: 358 ALE-YMGVHFDFVEIKDGALAP---------RTHYRRRDNRTAANRQLDPHMKGVV--KK 405

Query: 419 HIPLKESEKISKLQQDIQENDADS 442
               ++     K++Q IQE++   
Sbjct: 406 IKSKRKPGYKKKIKQAIQEDNRKK 429


>gi|213408863|ref|XP_002175202.1| ATP-dependent RNA helicase dbp3 [Schizosaccharomyces japonicus
           yFS275]
 gi|212003249|gb|EEB08909.1| ATP-dependent RNA helicase dbp3 [Schizosaccharomyces japonicus
           yFS275]
          Length = 554

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 127/384 (33%), Positives = 195/384 (50%), Gaps = 12/384 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           + F DL L  K+   +    + +PTPIQ  + P +L   DV GIA+TG+GKT +F +P +
Sbjct: 142 LSFDDLPLPDKLTAGLR--NFKQPTPIQAASWPYLLAGRDVVGIAETGSGKTVAFGIPAL 199

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +  + +    R L++ PTRELA Q  +N         L V  + GG P   Q +  
Sbjct: 200 RYLNQLPKEKHPSIRVLVVSPTRELAIQTYENMRDLLAPLGLNVVAVYGGAPKFEQARAA 259

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--- 176
              + + I TPGR+LD  N G +  + +  LV+DEADRMLD GF   I+NI S  P    
Sbjct: 260 REASVI-IGTPGRLLDLINDGAVNCSKVGYLVLDEADRMLDTGFEQDIRNIMSATPNPLA 318

Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
              RQT+ FSAT  + +++++  FL++P +I + +    A       V       +K   
Sbjct: 319 GGQRQTVFFSATWPESVRELASTFLKDPVKITIGSDELAASHNITQIVEVIDDPRQKEYR 378

Query: 235 LQ---QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
           L+   +    +      ++     K       +  ++ F V  IHG++ Q +R++ L +F
Sbjct: 379 LEALLRKHLKEIGKNGKVLVFALYKKEAARVENTLRRKFDVVGIHGDLSQAARIQALDSF 438

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K G   L+VA+D+AARGLDIP V  V N   P   E+YIHRIGRTGRA   G + TL   
Sbjct: 439 KSGRCNLLVATDVAARGLDIPQVQLVINLTFPLTIEDYIHRIGRTGRANTKGTSITLFTP 498

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDL 375
           +D  H   +  ++ +    +  +L
Sbjct: 499 QDKGHAGELINVLRQANQTVPDEL 522


>gi|115908623|ref|XP_783274.2| PREDICTED: similar to MGC83105 protein, partial [Strongylocentrotus
           purpuratus]
 gi|115941167|ref|XP_001189944.1| PREDICTED: similar to MGC83105 protein, partial [Strongylocentrotus
           purpuratus]
          Length = 680

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 99/389 (25%), Positives = 177/389 (45%), Gaps = 12/389 (3%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L   +S + +  V D G+ + T IQ K IP +L+  D+   A+TG+GKT +F++P 
Sbjct: 197 SFASLADRISEQTLKGVADMGFTQMTEIQHKAIPHMLEGKDILAAAKTGSGKTLAFLIPA 256

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           + ++ K +   R  + +      +       +  K  +            +         
Sbjct: 257 IELMNKLKFMPRNGKFVAGPSPIKKTMSKYCSVMKTVRKTQ-------NLVSISNHKYLD 309

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
               D L+   G + D  N  + +  N++ L+IDEADR+L++GF   ++ I  L+P  RQ
Sbjct: 310 NHTGDRLVKVMGFLTDLKNTPQFMYKNLQCLIIDEADRILEVGFEEEMKQIIKLLPKRRQ 369

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT T + + ++   L+             + T++          S+K  LL    
Sbjct: 370 TGLFSATQTRKTEDLARISLRKEPVYVGVDDHKESATVDGLEQGYVVCPSEKRFLLLFTF 429

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  ++F +   +V      L      V +IHG   Q  R +    F      ++
Sbjct: 430 LKKNRNKKVMVFFSSCMSVKFHSELLNYIDLPVNSIHGKQKQSKRTQTFFKFCNAQTGIL 489

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHID 358
           + +D+AARGLDIP V  +  +D  +  + YIHR+GRT R  +  G A  ++  E++  + 
Sbjct: 490 LCTDVAARGLDIPAVDWIVQYDPSDDPKEYIHRVGRTARGLKGKGHALLILRPEELGFVR 549

Query: 359 AIE--KLIEKKVDWLNGDLSSLNPPLEKI 385
            ++  K+   + D+    +S ++  LEK+
Sbjct: 550 YLKHAKVPLNEFDFSWSKVSDIHSQLEKL 578


>gi|50302639|ref|XP_451255.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660701|sp|Q6CXT4|IF4A_KLULA RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|49640386|emb|CAH02843.1| KLLA0A05731p [Kluyveromyces lactis]
          Length = 396

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 211/377 (55%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L  +++  +   G+V+P+ IQ + I  +++  DV   AQ+GTGKT +F +  L 
Sbjct: 23  SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++   +++ P+ LIL PTRELA Q+         + ++ V   IGG   +  ++ L  
Sbjct: 83  NIDE---KIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRG 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ D  +R     +NI++ ++DEAD ML  GF   I NI +++P T Q +
Sbjct: 140 GAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVV 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I   +V    +  K        L  
Sbjct: 200 LLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDC--LTDLYD 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   L +  F+V AI+ ++ Q+ R  I+  F+ G+ +++++
Sbjct: 258 SISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILIS 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V  +DI  +  +E
Sbjct: 318 TDLLARGIDVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGIAINFVTNKDIGAMRELE 377

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ L   +S L
Sbjct: 378 RFYSTQIEELPSSISEL 394


>gi|258573177|ref|XP_002540770.1| hypothetical protein UREG_00283 [Uncinocarpus reesii 1704]
 gi|237901036|gb|EEP75437.1| hypothetical protein UREG_00283 [Uncinocarpus reesii 1704]
          Length = 488

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 102/387 (26%), Positives = 195/387 (50%), Gaps = 20/387 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +LGL+  +   +    + +P+ IQ + +PL++     ++   +Q+GTGKTA+FVL +
Sbjct: 87  SFEELGLAEPIQKGLSKMDFRRPSKIQERALPLLMANPPMNMIAQSQSGTGKTAAFVLNI 146

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ L+    R + P+ L+L P+RELA Q+    +  G        L +        N+  
Sbjct: 147 LSRLDLSPDRQKTPQALVLAPSRELARQIVGVIQAMGTF---IDGLHVATAVPMEMNRNQ 203

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFIPYIQNITSLVPFTR 178
              A +++ TPG + D   +      ++ +LV+DEAD M    G       + +L+P T 
Sbjct: 204 PVQASIVVGTPGTVQDLIKKRLFNTQHLGVLVLDEADNMLDQQGLGDQCIRVKALLPRTI 263

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT  D + + +  F  N  ++ +     T E I+  ++   +   K   L++  
Sbjct: 264 QVVLFSATFPDHVVRYANKFAPNSNQLTLKHEELTVEGIKQLYLDCESDEHKYEILVK-- 321

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                T+ + IIF   + +   +   +  +G +V ++ G I+ + R +++  F+ GT ++
Sbjct: 322 FYGLLTIGSSIIFVKTRASAAEIERRMIAEGHTVVSLTGGIEGQKRDEVIDRFRNGTAKV 381

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPN-----------RAENYIHRIGRTGRAGRHGKAFT 347
           ++ +++ ARG+D+  V  V N+D+P             A+ Y+HRIGRTGR GR G A +
Sbjct: 382 LITTNVLARGIDVSTVSMVINYDIPELHLPGAARRMADAQTYLHRIGRTGRFGRVGVAVS 441

Query: 348 LVA-KEDIKHIDAIEKLIEKKVDWLNG 373
            V+ +++ + +  I+K     ++ ++ 
Sbjct: 442 FVSNRDEWQMLQDIQKYFNTNIERVDA 468


>gi|294813953|ref|ZP_06772596.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|326442363|ref|ZP_08217097.1| putative ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC
           27064]
 gi|294326552|gb|EFG08195.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 757

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 145/451 (32%), Positives = 222/451 (49%), Gaps = 10/451 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L
Sbjct: 78  ITFADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTL 137

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +GR   + PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LE
Sbjct: 138 ARLAQGRTEKKKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALE 197

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+ D  NRG   + N+E+ V+DEAD+M D+GF+P +  +   VP   Q 
Sbjct: 198 RGVDILVATPGRLRDIINRGACSLENVEVAVLDEADQMSDLGFLPEVTELLDQVPGGGQR 257

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM +E+  + + +L NP   EV++      T+ H  +       K          
Sbjct: 258 MLFSATMENEISTLVKRYLTNPVSHEVDSAQGNVTTMTHHVLVV-----KPKDKAPVTAA 312

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   +     +   L + G    A+HG + Q +R + L++FK+G +  +V
Sbjct: 313 IAARKGRTIIFVRTQLGADRIAEQLREAGVKADALHGGMTQGARTRTLADFKDGYVNALV 372

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI-DA 359
           A+D+AARG+ +  +  V N D     ++Y+HR GRT RAG+ G   +L      + I   
Sbjct: 373 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGTVVSLSLPHQRRQIFRL 432

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +E    +    + G   + +P + +I  A+     + +     +   +R   + + Q   
Sbjct: 433 MEDAGVEASRHIVGGAGAFDPEVAEITGARSLTEVQADSANNAAKQAEREVADLTRQLER 492

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMP 450
           I      +  +L+++     A +   RG  P
Sbjct: 493 IQ----RRAVELREEADRLVARAARERGEDP 519


>gi|56421010|ref|YP_148328.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
 gi|56380852|dbj|BAD76760.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
          Length = 436

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 133/441 (30%), Positives = 217/441 (49%), Gaps = 16/441 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ A+    + KPT IQ + IP  L+   + G +QTGTGKT +++LP++ 
Sbjct: 5   QFTRFSFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIIE 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVAD----NFEKYGKNYNLTVALLIGGIPFEAQNK 117
            ++  RA V+     I  PTRELA Q+        +   K+  +    LIGG   +   +
Sbjct: 65  KIKPERAEVQAV---ITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL     ++I TPGRI D      L ++   ILV+DEAD MLDMGFI  +  I + +P  
Sbjct: 122 KLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKD 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+ ++L+   + +++NP  + V+   +  + IEH          ++   L +
Sbjct: 182 LQMLVFSATIPEKLKPFLKKYMENPTFVHVDPKRTANQNIEH---VLIPLRGREKTKLLR 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         I+F N +K    +   L +QG  V  +HG++  R R K+++  ++   Q
Sbjct: 239 DVLLSYNPYLAIVFVNTRKMADEVADRLAEQGLKVGVLHGDLTPRERRKMMNLIRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N+++P+  + YIHR GRT RAG  G A T+    D   I
Sbjct: 299 YVVATDLAARGIDIEGVSHVINYELPDDLQFYIHRAGRTARAGYSGIAATIYEPSDQDAI 358

Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
             +EK+    V  D + G+   L P     +        K++ +        + K+    
Sbjct: 359 ARLEKMGISFVHRDLVRGEWKELPPW----NRRSKRAGEKDDELALLFAKLKKTKQVKPG 414

Query: 416 QKSHIPLKESEKISKLQQDIQ 436
            K  +  +  +K  +L +  +
Sbjct: 415 YKKKLRAELEKKKKRLGRFKK 435


>gi|23308803|ref|NP_599999.2| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62389660|ref|YP_225062.1| ATP-dependent RNA helicase protein [Corynebacterium glutamicum ATCC
           13032]
 gi|21323537|dbj|BAB98164.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
           ATCC 13032]
 gi|41324995|emb|CAF19476.1| PROBABLE ATP-DEPENDENT RNA HELICASE PROTEIN [Corynebacterium
           glutamicum ATCC 13032]
          Length = 424

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 148/402 (36%), Positives = 218/402 (54%), Gaps = 4/402 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG++ ++  A+   G  +   IQ  T+P+ L  HD  G A+TG GKT  F +P+L 
Sbjct: 9   TFTELGVAVEITDALEALGINRTFAIQEYTLPIALDGHDFIGQARTGMGKTYGFGVPLLD 68

Query: 62  ILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +            PR L++ PTRELA QV D+ ++   N  L +    GG P+E Q   
Sbjct: 69  RVFDSADVAETDGTPRALVIVPTRELAVQVGDDLQRAATNLPLKIFTFYGGTPYEEQIDA 128

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G DV++ TPGR+LD   RG L ++ + ILV+DEAD MLD+GF+P I+ I   +    
Sbjct: 129 LKVGVDVVVGTPGRLLDLHKRGALSLDKVAILVLDEADEMLDLGFLPDIEKILRALTHQH 188

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATM   +  ++ +FL  P  I   T  ++A       V   A    K A+  ++
Sbjct: 189 QTMLFSATMPGAILTLARSFLNKPVHIRAETSDASATHKTTRQVVFQAHKMDKEAITAKI 248

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQS+D     IIF   K+    +   L  +GFSV ++HG++ Q +R K L+ F+ G I +
Sbjct: 249 LQSKDRG-KTIIFARTKRTAAQVAEDLASRGFSVGSVHGDMGQPAREKSLNAFRTGKIDI 307

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ DV HV N+  P+    Y+HRIGRTGRAG +G A TLV  ++     
Sbjct: 308 LVATDVAARGIDVDDVTHVINYQTPDDPMTYVHRIGRTGRAGHNGTAVTLVGYDETLKWT 367

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
            I+  +E          S+    LE +DI +    R   P  
Sbjct: 368 VIDNELELGQPNPPQWFSTSPELLETLDIPEGVTERVGPPTK 409


>gi|322821755|gb|EFZ27990.1| RNA helicase, putative [Trypanosoma cruzi]
          Length = 553

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 80/369 (21%), Positives = 151/369 (40%), Gaps = 14/369 (3%)

Query: 3   FADL-----GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           F++L      +  ++V  + +  +  PTPIQ++ IP ++ + DV   A TG+GKT SF++
Sbjct: 125 FSELVRPPLSVDERLVSNLFERNHRIPTPIQMQAIPCLINKRDVLACAPTGSGKTLSFLI 184

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           PM  IL+         R LI+ PT ELA Q+        K     +         +    
Sbjct: 185 PMFHILKSPNTEAG-VRGLIITPTMELAEQIEREAFFLMKGQRWKL--------VQHGQS 235

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
              +   +        +       L      +    +         +  + +I +   F 
Sbjct: 236 TRNKDIFITTPRRVFTMIEKKLIDLGNTQYLVFDEVDRLWDSATDNLQVVDSILTACTFE 295

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            + +           +     + +P  I +      +   +      +        +  +
Sbjct: 296 EKVVALFTATLSSKIEGIARTVMSPDPIRIIVSGRVSANKKISQELVFCGNELGKIVEIR 355

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L  +      +IF    +    L   +  QG ++  ++  +    R + + NF+ G + 
Sbjct: 356 NLLREGISPPVLIFVQSIERTKELYDEIRCQGLNIAVMNSKMSHEERDETIMNFRLGKLW 415

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ +DL +RG+D  ++G V NFD P   E+YIHRIGR GRAG+ GKA T   ++D K I
Sbjct: 416 VIITTDLLSRGIDFKNIGTVINFDFPITIESYIHRIGRCGRAGKTGKAITFFTEDDKKRI 475

Query: 358 DAIEKLIEK 366
             I +++++
Sbjct: 476 PPIARVMKE 484


>gi|148231181|ref|NP_001086413.1| translation initiation factor eIF4A II [Xenopus laevis]
 gi|50603985|gb|AAH77641.1| LOC444845 protein [Xenopus laevis]
          Length = 406

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 199/378 (52%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 33  SFDDMSLSESLLRGIYAYGFEKPSAIQQRAIMPCIKGYDVIAQAQSGTGKTATFAISILQ 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E      +    L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 93  QIELDMKATQA---LVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQS 149

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q 
Sbjct: 150 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLSSNAQV 209

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L      
Sbjct: 210 VLLSATMPADVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL--Y 267

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 268 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLI 327

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V ++D + +  I
Sbjct: 328 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEDDKRTLKDI 387

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      V+ +  +++ L
Sbjct: 388 ETFYNTTVEEMPMNVADL 405


>gi|301112795|ref|XP_002998168.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262112462|gb|EEY70514.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 823

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 129/436 (29%), Positives = 215/436 (49%), Gaps = 60/436 (13%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            +++ G  L   V  A+ D G+ +P+PIQ++ IP+ LQ+ D+ GIA+TG+GKTA+FV+P+
Sbjct: 358 KWSEAGKMLPDAVYKAIKDLGFERPSPIQMQAIPIGLQKRDIIGIAETGSGKTAAFVIPI 417

Query: 60  LTIL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY---------NLTVA 104
           +  +         R   + P  L++ PTRELA Q+     K  K+           +   
Sbjct: 418 IAYIYSLPATMVARTGEQGPLALVMAPTRELALQIEQEAIKLCKHTSVGLPEKMNPIKTL 477

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
            ++GG   E Q  +L  G +++I TPGR++D      L++N    +V+DEADRM+DMGF 
Sbjct: 478 SVVGGQSIEDQGFRLREGVEIIIGTPGRLMDCLESHYLVLNQCNYVVLDEADRMIDMGFE 537

Query: 165 PYIQNITSLV----------------------------PFTRQTLLFSATMTDELQKVSE 196
           P +  +   +                               R T +FSATM  E++++++
Sbjct: 538 PQVVAVLENMGSLLKSENEEEMEQQLTLANRAQLGEFQHRLRVTTMFSATMPVEVERLAK 597

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK---------------KCALLQQLLQS 241
            FL++P  +++    S         V       K                  + +   + 
Sbjct: 598 TFLRHPSIVKIGDEDSGKNKRIEQRVMFMNPGKKRSKLVEVLRDILSAQNVPVPRSRKEK 657

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F N KK   ++   +  +GF    +HG   Q  R + L  F+EG   ++VA
Sbjct: 658 VVDGAKIIVFVNIKKECDSVAKFISSEGFRCTILHGGKTQDQREESLKMFREGYCDMLVA 717

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+A RGLDIPDV HV NFD+P++ +NY HRIGRTGRAG+ G A +L+  +D + +  ++
Sbjct: 718 TDVAGRGLDIPDVTHVVNFDLPSKIQNYSHRIGRTGRAGKDGVAISLLTDDDEEIMYDLK 777

Query: 362 KLIEKKVDWLNGDLSS 377
           + +      +  +L++
Sbjct: 778 QYLVSTEMPVPSELAN 793


>gi|302524816|ref|ZP_07277158.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces sp.
           AA4]
 gi|302433711|gb|EFL05527.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces sp.
           AA4]
          Length = 511

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 131/427 (30%), Positives = 197/427 (46%), Gaps = 16/427 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
            F +LGL   +V A+   G  +P PIQ  T+P  L   DV G  +TG+GKT  FVLP   
Sbjct: 3   TFTELGLPKPLVDALAAQGVTEPFPIQAATLPHTLAGRDVLGRGRTGSGKTYGFVLPVLA 62

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                  R R   PR LIL PTRELA Q+        +   L    + GG+    Q  +L
Sbjct: 63  RLAAGPTRRRPGRPRALILAPTRELATQIEAAIVPLARPLGLKATTIFGGVSANPQITRL 122

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++  PGR+ DH   G+  ++ IEI V+DEAD M D+GF+P ++ I +  P   Q
Sbjct: 123 RDGVDIVVACPGRLADHMRTGEAKLDKIEITVLDEADHMADLGFLPEVRRIMAATPERGQ 182

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT+   +  +++ F+ +P    V++  S   T+ H  +     +     +     
Sbjct: 183 RLLFSATLDGGIDVLAKRFMNDPMLHSVDSAQSPVSTMTHHVLHLEETHRLPVLVDL--- 239

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    ++F   K     L   L   G     +HGN+ Q +R + L  F  GT + +
Sbjct: 240 --TAAPGRTLVFTRTKHRAKALTRKLVASGVPAVELHGNLGQNARTRNLEAFSSGTAKTL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   TL+  E +  + A
Sbjct: 298 VATDIAARGIHVDDVTLVIHADPPVEHKAYLHRSGRTARAGASGTVVTLMTDEQVADVRA 357

Query: 360 IEKLIE-----KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP----IPQKSTGFDRRK 410
           + +         ++   +  L+ L P       +    A  N P        + G  RR+
Sbjct: 358 LTRKAGISPTTTRISPTHPLLAELAPGDRSFTASPRRPAVDNRPKTVTASGAAPGTGRRR 417

Query: 411 KNYSSQK 417
              S  +
Sbjct: 418 GAPSENR 424


>gi|224146601|ref|XP_002326066.1| predicted protein [Populus trichocarpa]
 gi|222862941|gb|EEF00448.1| predicted protein [Populus trichocarpa]
          Length = 530

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 117/366 (31%), Positives = 182/366 (49%), Gaps = 24/366 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ L   ++  +    Y +PT IQ + + + L   D+ G A+TG+GKTA+F +PM+ 
Sbjct: 115 SFEDMCLHQSIMKDIAHHEYTRPTLIQAQAMTVALSGRDLLGCAETGSGKTAAFTIPMIQ 174

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118
               +    R   P  ++L PTRELA Q+    +++ ++      A+++GG     Q  +
Sbjct: 175 HCLAQPPVQRGDGPLAMVLAPTRELAQQIEKEVKRFSRSLESFRTAIVVGGTKSADQGSE 234

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  G DV++ TPGR++DH  +G   ++ I  +V+DEADRMLDMGF P I+ +   +P   
Sbjct: 235 LRAGVDVIVATPGRLIDHLQQGNTSLSRISFIVLDEADRMLDMGFEPQIREVMHNLPEKH 294

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSATM  E++ +++ +L +P +++V   SS    +        A     C L   +
Sbjct: 295 QTLLFSATMPVEIETLAQEYLISPVQVKVGKVSSPTANVSQILTKVSASEKIDCLLALLV 354

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +    K+   F      V       E     V                          
Sbjct: 355 EDASQAEKSNQSFPLTIVFVERKTRCNEVAEALVAQGLQ--------------------- 393

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
            VA+D+A+RGLD+  V HV N D+P   E+Y+HRIGRTGRAG  G+A +     D+  + 
Sbjct: 394 AVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTDRDLFLVA 453

Query: 359 AIEKLI 364
            I+K I
Sbjct: 454 QIKKAI 459


>gi|104774414|ref|YP_619394.1| DEAD-box ATP dependent DNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103423495|emb|CAI98397.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 453

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 129/444 (29%), Positives = 210/444 (47%), Gaps = 17/444 (3%)

Query: 1   MD--FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           M+  F D  L  ++   +   G+ KPTP+Q K IP +L+   V   A TG+GKT ++++P
Sbjct: 1   MNNIFTDTRLRSEIRQGLAKIGFTKPTPVQEKVIPAMLKGESVIVQAATGSGKTHAYLIP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L  +++    V+   T       +   +VA               L  G        + 
Sbjct: 61  ILNAIDEDARYVQAIVTAPSRELADQLYRVARQLRDNSGLNIAIAHLAGGSDRDRQIARF 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +    ++I TPGR+LD  ++  LL++ ++  VIDEAD  LD+GF+  +  I + +P   
Sbjct: 121 EQNEPQLVIATPGRLLDFADKKILLLDQVKNFVIDEADMTLDLGFLADVDKIAARLPKDV 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
               FSAT+  +L      ++  P+ I ++ P+  A TI++  +   ++  KK       
Sbjct: 181 VMSAFSATIPVKLTNFLRKYMAKPEEIVIDNPAVIAPTIKNDLLDIGSKDRKKIVYKLL- 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +       ++F N K+ V  L   L KQG  V  IHG+I +R R + L   + G  Q 
Sbjct: 240 --TMGQPYLALVFANTKQMVDELADYLTKQGLKVAKIHGSITERERKRTLREVRAGQYQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARG+D+P V  V N+++P   E  IHRIGRTGR G  G A TLV +E++  + 
Sbjct: 298 VVASDLAARGIDLPGVSLVINYEIPKDLEFIIHRIGRTGRNGLPGHAVTLVREEEMNRVG 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
           A+E  +    D++     +L P           H R+ +     +   D   K     K 
Sbjct: 358 ALE-YMGVHFDFVEIKDGALAP---------RTHYRRRDNRTAANRQLDPHMKGVV--KK 405

Query: 419 HIPLKESEKISKLQQDIQENDADS 442
               ++     K++Q IQE++   
Sbjct: 406 IKSKRKPGYKKKIKQAIQEDNRKK 429


>gi|28278797|gb|AAH45237.1| LOC444845 protein [Xenopus laevis]
          Length = 404

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 199/378 (52%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 31  SFDDMSLSESLLRGIYAYGFEKPSAIQQRAIMPCIKGYDVIAQAQSGTGKTATFAISILQ 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E      +    L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 91  QIELDMKATQA---LVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQS 147

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q 
Sbjct: 148 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLSSNAQV 207

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L      
Sbjct: 208 VLLSATMPADVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL--Y 265

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 266 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLI 325

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V ++D + +  I
Sbjct: 326 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEDDKRTLKDI 385

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      V+ +  +++ L
Sbjct: 386 ETFYNTTVEEMPMNVADL 403


>gi|303290845|ref|XP_003064709.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226453735|gb|EEH51043.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 515

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 119/435 (27%), Positives = 187/435 (42%), Gaps = 55/435 (12%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD   +P +  A+  AG+  PTPIQ +  P+     DV  +A+TG+GKT +F+LP+   
Sbjct: 66  FADAPFAPSIANALASAGFPSPTPIQQRAWPVACDGADVVAVAKTGSGKTLAFLLPIFHQ 125

Query: 63  ---------------------LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKN 98
                                      R + P      +  PTRELA Q+     +YG+ 
Sbjct: 126 ARRTHCFPYDRAAAAAAAAARPPSIHHRSQTPPRCDALVCAPTRELAIQIHAECARYGEP 185

Query: 99  YNLTVALLIGGIPFEAQNKKLERGA-------DVLICTPGRILDHFNRGKLLMNNIEILV 151
             +    + GG P   Q   +   A        +++ TPGR+ D   +  L ++    +V
Sbjct: 186 SGIDAVCVYGGAPAYEQKNAIAAAAKNTNGVGFIVVATPGRLCDLMEQRALALDRCAHVV 245

Query: 152 IDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211
           +DEADRMLDMGF P  ++I+       +T++F+AT    ++K++  FL      + +   
Sbjct: 246 LDEADRMLDMGFEPQARSISH-WSPYDRTMMFTATWPKAVRKMAAKFLAGDDGDDGDAGD 304

Query: 212 STAETIEHC----------------------FVATYAQYSKKCALLQQLLQSQDTMKNGI 249
              +   +                            A   +K   +   L +       +
Sbjct: 305 GDGDGGNYVKIFLGEGGDGDGAALAANRAVSQRFIRATDDEKDKHMYDFLCALKEGSRVV 364

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
            F N K+ V  L  +    GF   ++HG+  Q  R   L+ F      LM A+D+AARGL
Sbjct: 365 AFANTKRRVEMLTKAFWNHGFGSVSVHGDKKQSEREAALNKFIRDECPLMFATDVAARGL 424

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIEKLIEKKV 368
           DI  V HV NFD+    E+Y+HRIGRTGRAG  G++ T    + D++   A+ K+     
Sbjct: 425 DIKGVTHVVNFDMARDVESYVHRIGRTGRAGELGESVTFWNPDYDVECAPALCKIARDAG 484

Query: 369 DWLNGDLSSLNPPLE 383
             +   L+      E
Sbjct: 485 QDVPEWLAKYERAKE 499


>gi|163916596|gb|AAI57756.1| LOC734085 protein [Xenopus (Silurana) tropicalis]
          Length = 758

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 108/371 (29%), Positives = 171/371 (46%), Gaps = 12/371 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+   +S   +  +   G     PIQ KT        DV   A+TGTGKT SF +P++ 
Sbjct: 180 DFSKFPISKDTIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVE 239

Query: 62  ILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L + +    R R PR +IL PT      +    E       L V    GG P++ Q   
Sbjct: 240 RLNEDQQPLARGRAPRVIILTPT--RELAIQITNEIRSITKKLKVCCFYGGTPYQQQVFS 297

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++ G D L+ TPGR+ D     +L +  ++ +V+DE D M DMGF   ++ I S+     
Sbjct: 298 IKEGFDFLVGTPGRVRDLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYKPD 357

Query: 179 QTLL-----FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV--ATYAQYSKK 231
                    FSAT  D +  V++ +++            + +             +  K 
Sbjct: 358 PEENPQTLLFSATCPDWMYNVAKKYMKKQFEKIDLVGHRSQKAAITVEHLAIECTRSQKA 417

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L   +     +    IIFC+ K     L  +      S   +HG++ Q+ R  IL  F
Sbjct: 418 AVLGDIVQVYSGSHGKSIIFCDSKLEAHELATNCGSLKQSAKPLHGDLQQKEREVILKGF 477

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           ++G+ +++VA+++AARGLDIP+V  V  +  P  A+ Y+HR GRTGRAGR G   +L   
Sbjct: 478 RQGSFEVLVATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGICISLYEP 537

Query: 352 EDIKHIDAIEK 362
            +  ++  +E+
Sbjct: 538 RERHYLRNVER 548


>gi|113931550|ref|NP_001039224.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Xenopus (Silurana)
           tropicalis]
 gi|89272468|emb|CAJ82454.1| novel GUCT (NUC152) domain containing DEAD/DEAH box helicase
           [Xenopus (Silurana) tropicalis]
          Length = 755

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 108/371 (29%), Positives = 171/371 (46%), Gaps = 12/371 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF+   +S   +  +   G     PIQ KT        DV   A+TGTGKT SF +P++ 
Sbjct: 180 DFSKFPISKDTIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVE 239

Query: 62  ILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            L + +    R R PR +IL PT      +    E       L V    GG P++ Q   
Sbjct: 240 RLNEDQQPLARGRAPRVIILTPT--RELAIQITNEIRSITKKLKVCCFYGGTPYQQQVFS 297

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++ G D L+ TPGR+ D     +L +  ++ +V+DE D M DMGF   ++ I S+     
Sbjct: 298 IKEGFDFLVGTPGRVRDLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYKPD 357

Query: 179 QTLL-----FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV--ATYAQYSKK 231
                    FSAT  D +  V++ +++            + +             +  K 
Sbjct: 358 PEENPQTLLFSATCPDWMYNVAKKYMKKQFEKIDLVGHRSQKAAITVEHLAIECTRSQKA 417

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L   +     +    IIFC+ K     L  +      S   +HG++ Q+ R  IL  F
Sbjct: 418 AVLGDIVQVYSGSHGKSIIFCDSKLEAHELATNCGSLKQSAKPLHGDLQQKEREVILKGF 477

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           ++G+ +++VA+++AARGLDIP+V  V  +  P  A+ Y+HR GRTGRAGR G   +L   
Sbjct: 478 RQGSFEVLVATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGICISLYEP 537

Query: 352 EDIKHIDAIEK 362
            +  ++  +E+
Sbjct: 538 RERHYLRNVER 548


>gi|71423512|ref|XP_812486.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70877271|gb|EAN90635.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 948

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 125/453 (27%), Positives = 200/453 (44%), Gaps = 36/453 (7%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--E 64
           GL   V+  +   G+ +P  +Q    P ++   D+   A+TG+GKT +++LP++     +
Sbjct: 312 GLPDSVLDLLAREGFEQPFAVQSLGSPALMSGRDLLITAKTGSGKTLAYLLPLIRHCVGQ 371

Query: 65  KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124
           +   +   P  LI  PTRELAAQ+A   EK      L      G  P     +    G +
Sbjct: 372 EPCGKGEGPIGLIFVPTRELAAQIAQLAEKLCVAAKLRFVSSYGLTPLADNIRHCRAGCE 431

Query: 125 VLICTPGRILDHFNRG---KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           V++CTPGR+LD         + +     +VIDEADRM D GF+ +++     +   RQ  
Sbjct: 432 VMVCTPGRLLDLLTVNGGAVISLRRTSFVVIDEADRMFDSGFMEHVEAFLKNIRPDRQLA 491

Query: 182 LFSATMTDELQKVSENFLQNPKR-----------IEVNTPSSTAETIEHCFVATYAQYSK 230
           L SATM  EL+KV    +Q+P                       E +     A   +  K
Sbjct: 492 LISATMPKELKKVIIRHMQDPVEVTVGGKPTPASNVEQRFFFFDEEVYEVEEANRTEDKK 551

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVV---NLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
              LLQ L     T ++ II   Q+K          S       +  ++  +D   R   
Sbjct: 552 FLKLLQILSDEGGTGQHLIIIFAQRKEECDELFARLSACGYQKRIAVLYSGMDPLDREFA 611

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L +F  G   +++A+ +A RGLDIP +  V N+ +P+  E Y+HRIGRTGRAG+ GKA +
Sbjct: 612 LEHFAPGNQFILIATGVAERGLDIPYLELVINYTLPDHYEAYVHRIGRTGRAGKKGKAVS 671

Query: 348 LV--AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
                K+D   ++  E L   +             P E  + A     ++   I + +TG
Sbjct: 672 FFMRGKDDDLSVELCEGLERAQQQV----------PEELYERAAKLREKRKEGIVRHNTG 721

Query: 406 FDR-----RKKNYSSQKSHIPLKESEKISKLQQ 433
           F R     +K  ++ +      K + + + L++
Sbjct: 722 FYRGYMKAKKLRFTDRGQEEQFKAAARAAGLEE 754


>gi|71000162|ref|XP_754798.1| eukaryotic translation initiation factor 4 [Aspergillus fumigatus
           Af293]
 gi|74674080|sp|Q4WX43|IF4A_ASPFU RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|66852435|gb|EAL92760.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           fumigatus Af293]
 gi|159127807|gb|EDP52922.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           fumigatus A1163]
          Length = 406

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 129/375 (34%), Positives = 208/375 (55%), Gaps = 5/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  + L P+++  V   G+ +P+ IQ + I  +++ +DV   AQ+GTGKTA+F +  L 
Sbjct: 26  SFDAMDLKPELLRGVYAYGFERPSAIQQRAILPIIKGNDVIAQAQSGTGKTATFSISALQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+     V+  + LIL PTRELA Q+       G   N+     IGG       K L+ 
Sbjct: 86  KLDPN---VKGCQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTNVREDMKALQE 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R  L  +N+++ ++DEAD ML  GF   I +I  L+P + Q +
Sbjct: 143 GPQVVVGTPGRVQDMIQRRVLRTDNLKMFILDEADEMLSRGFTEQIYDIFQLLPQSTQVV 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+++P RI V     T E I+  ++A   +  K        L  
Sbjct: 203 LLSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDT--LSDLYE 260

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IFCN ++ V  L   L  + F+V A+HG+++Q  R  I+  F+ G+ ++++A
Sbjct: 261 TVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIA 320

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D++ +  IE
Sbjct: 321 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIE 380

Query: 362 KLIEKKVDWLNGDLS 376
           +    +++ +  +++
Sbjct: 381 QFYSTQIEEMPMNVA 395


>gi|167860961|gb|ACA05234.1| vasa-like protein [Apostichopus japonicus]
          Length = 530

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 130/374 (34%), Positives = 202/374 (54%), Gaps = 13/374 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +  L   +   V  A Y KPTP+Q   IP+V    D+   AQTG+GKTA+F+LP+L+
Sbjct: 71  SFGEADLYDSIGENVRRAKYDKPTPVQKYGIPIVSAGRDLMACAQTGSGKTAAFLLPILS 130

Query: 62  ILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            L +   +       + P+ +++ PTRELA Q+ D   K+     +   ++ GG   + Q
Sbjct: 131 GLLRDGLQSSALSGQQCPQCIVVSPTRELAIQIFDEARKFSYKTMIKCVVIYGGTKVQHQ 190

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              ++RG +VL+ TPGR+L   N G + +  ++ LV+DEADRMLDMGF P ++ + +   
Sbjct: 191 TSMVDRGCNVLVATPGRLLHFINSGMISVEKVKYLVLDEADRMLDMGFGPDMEKLVNNPA 250

Query: 176 FT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 R TL+FSAT  +E+Q+ +  +L N   + V         +    V       K 
Sbjct: 251 MPKKGERHTLMFSATFPNEVQERAAEYLDNYLFLTVGRVGGANSDVRQVVVEVPQAAKK- 309

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
              L ++LQSQ      ++F   K+    L   L + GF   +IHG+ +QR R + L++F
Sbjct: 310 -DKLIEILQSQPENDRTLVFTETKRGADFLASYLSQSGFPTTSIHGDREQREREEALNDF 368

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           K     ++VA+ +A+RGLDIP V HV NFD+P+  ++Y+HRIGRTGR G  G + +    
Sbjct: 369 KRNRASVLVATSVASRGLDIPAVKHVVNFDLPSEIDDYVHRIGRTGRCGNTGLSTSFYNP 428

Query: 352 E-DIKHIDAIEKLI 364
           E D     A+ K++
Sbjct: 429 EKDATISRALIKIL 442


>gi|159127543|gb|EDP52658.1| ATP dependent RNA helicase (Dbp8), putative [Aspergillus fumigatus
           A1163]
          Length = 577

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 98/424 (23%), Positives = 173/424 (40%), Gaps = 9/424 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA L ++P +V ++      KPT IQ   IP +L+  D  G ++TG+GKT +F +PML 
Sbjct: 112 SFAALNVAPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFSVPMLQ 171

Query: 62  ILEKGRARVR----MPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQN 116
              +    +      P   I E  + ++A  +          ++   A+ + G P     
Sbjct: 172 KWAEDPFGIFGVVLTPTRSIFEQIKAISAPQSMKPVLITGGTDMRPQAIALAGRPHVVIA 231

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
                   +       +        ++++  + L+      ML            S    
Sbjct: 232 TPGRLADHIKSSGEDTVCGLKRVRMVVLDEADRLLASGPGSMLPDVETCLSALPPSSERQ 291

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKR--IEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
           T             L+ +  +  + P            T                ++  L
Sbjct: 292 TLLFTATVTPEVRALKNMPRSANKPPVFVTEISTENQGTIPPTLKQTYLKVPLTHREAFL 351

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
              L    +  K  I+FCN  K    L   L +    V ++H  + Q  R   L+ F+  
Sbjct: 352 HVLLSTEGNASKPAIVFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSERNANLARFRAS 411

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354
             +++VA+D+A+RGLDIP V  V N+DVP   ++Y+HR+GRT RAGR G+A TLV + D+
Sbjct: 412 AARILVATDVASRGLDIPTVSLVINYDVPRNPDDYVHRVGRTARAGRRGEAVTLVGQRDV 471

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD--RRKKN 412
           + + AIE+ + ++++  + +  S+   L +    +     K   + +   G D   RK+N
Sbjct: 472 QLVLAIEERVGRQMEEWSEEGVSIEGRLVRTGALKEVGEAKREAMVEIDEGRDVLGRKRN 531

Query: 413 YSSQ 416
              +
Sbjct: 532 KLKK 535


>gi|120553901|ref|YP_958252.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120323750|gb|ABM18065.1| ATP-dependent RNA helicase DbpA [Marinobacter aquaeolei VT8]
          Length = 457

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 144/411 (35%), Positives = 219/411 (53%), Gaps = 17/411 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGLS  +   +   GY +PTP+Q + +PL L   DV  +AQTG+GKTA+F +P++ 
Sbjct: 3   SFKALGLSAAMQANLDQLGYQQPTPVQAEAVPLALAGKDVIAMAQTGSGKTAAFGIPIIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++    RV+   +L+L PTRELA QVA    +  +  +    L +  G+P   Q   L 
Sbjct: 63  AIDPRCFRVQ---SLVLCPTRELADQVAKALRELARAKDNVKVLTLCGGVPIGPQIGSLS 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGR+ DH  +G L ++ +++LV+DEADRMLDMGF   + +I S  P  RQT
Sbjct: 120 HGAHIVVGTPGRVDDHLRKGTLSLDGLKVLVLDEADRMLDMGFEEVVTSIVSQSPGGRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    ++K+SE F   P+ + V + ++T    E  +     Q +   A L     
Sbjct: 180 LLFSATWPPAIRKLSEQFQSKPEDVRVESKAATITIEESFYEIQPDQRAAAVAALL---- 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+    + ++FC  K++   L   L + GFS  ++HG++DQR R   L  F   +  ++V
Sbjct: 236 SRFQPVSSLVFCTTKRDCDELSDELGRLGFSALSLHGDLDQRERDSALVRFANQSCTVLV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N +     E + HR+GRTGRAG  G A TL        I  +
Sbjct: 296 ATDVAARGLDIKGLPLVINAEPARDPEVHTHRVGRTGRAGEQGHAVTLCTPRQGHKITRL 355

Query: 361 EKLIEKKVDWLNGD------LSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           E    + V W + +      L  + P ++ + +A     RK+   P    G
Sbjct: 356 EAERGEPVLWGDTEALLAEALRPVTPAMKTLCLA---GGRKDKVRPGDVMG 403


>gi|241953695|ref|XP_002419569.1| pre-mRNA-processing ATP-dependent RNA helicase, putative [Candida
           dubliniensis CD36]
 gi|223642909|emb|CAX43164.1| pre-mRNA-processing ATP-dependent RNA helicase, putative [Candida
           dubliniensis CD36]
          Length = 873

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 121/428 (28%), Positives = 198/428 (46%), Gaps = 28/428 (6%)

Query: 1   MDFADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           + ++ L L   +   + D   + KP+ IQ + +P +L   DV GIA+TG+GKT S+VLPM
Sbjct: 281 LKWSHLALPTNLSSVIHDKLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPM 340

Query: 60  LTILEKGRA--RVRMPRTLILEPTRELAAQVADNF-EKYGKNYNLTVALLIGGIPFEAQN 116
           L  +   +     + P  LIL PTRELA Q+         KN  L V    GG   E Q 
Sbjct: 341 LRHIHDQQFLKDNQGPIGLILSPTRELALQIEKEILNFTKKNNYLRVCCCYGGSSIENQI 400

Query: 117 KKLERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            +L++G ++++ TPGR++D     +     +     +V+DEADRM D+GF P +  I + 
Sbjct: 401 NELKKGVEIIVGTPGRVIDLLAANSGRVTNLKRCTFVVLDEADRMFDLGFEPQVNKIFTQ 460

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +   RQT+LFSAT   +++ +++  L +P  I V   S  A  I+   +       ++  
Sbjct: 461 IRPDRQTVLFSATFPRKMETLAKQILADPVVIIVGGISVVAPEIKQDVILFETSLEEQDK 520

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK------------QGFSVCAIHGNIDQ 281
             QQ ++    + +          ++                              +   
Sbjct: 521 YKQQRIEKLHDILSNYQIERPDSKILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMD 580

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R          +  I +++A+ +AARGLD+ ++G V NFD PN  E+Y+HR+GRTGRAG 
Sbjct: 581 RKYAIKEFASMDSGINILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGA 640

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
            G A T V+    K +  + K ++          S ++P LE  +IA     +      +
Sbjct: 641 KGNAVTFVSSSQPKEVFNLVKALKLS-------HSDIDPKLE--EIANKFINKVKAGKEK 691

Query: 402 KSTGFDRR 409
             +GF  +
Sbjct: 692 IGSGFGGK 699


>gi|163749734|ref|ZP_02156980.1| putative ATP-dependent RNA helicase [Shewanella benthica KT99]
 gi|161330547|gb|EDQ01505.1| putative ATP-dependent RNA helicase [Shewanella benthica KT99]
          Length = 431

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 134/389 (34%), Positives = 214/389 (55%), Gaps = 12/389 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL P+++  +    Y+ PT +Q KTIP VL   D+   A TG+GKTA+F LPML 
Sbjct: 14  TFEQLGLIPELLKRLTLLEYLNPTLVQGKTIPAVLSGRDLLAGAITGSGKTAAFALPMLQ 73

Query: 62  ILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGG--IPFEAQN 116
            L K  A+V     +   +L PTRELA QVA++F+ YG+     + +      +    Q 
Sbjct: 74  KLAKSSAKVSKGNQVSGLVLVPTRELAQQVAESFKSYGQLIKPRLKIEAVFGGVSANTQM 133

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             +  GADVL+ TPGR+LD  +   + +++++ LV+DEADRML +GF   +  + +L+P 
Sbjct: 134 LAMRGGADVLVATPGRLLDLISSNAIKLDDVKTLVLDEADRMLSLGFTEELNQVLALLPK 193

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +QTLLFSAT  +E++ +++N L  P  I++ +     E         Y     +   L 
Sbjct: 194 HKQTLLFSATFPEEVKTLTDNLLSTPVEIQIQS-----EEQTTLKQQVYTVNRNRKTALL 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L  ++  +  ++F + K     L   L K G +    H +  Q +R K+L  FK G  
Sbjct: 249 AHLIKENDWRQVLVFASAKNTCNRLEQKLAKAGIAAQIFHSDKSQGARTKVLEAFKNGET 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARG+DI  +  V N+++P    +Y+HRIGR+GRAG  G A +L++ ++ +H
Sbjct: 309 HVLIATDIAARGIDIDKLPVVINYELPRSPVDYMHRIGRSGRAGEAGLALSLISHDEYQH 368

Query: 357 IDAIEKLIEKKVDW--LNGDLSSLNPPLE 383
              IEK  + K+D   + G  +    PL+
Sbjct: 369 FKLIEKKNKIKLDREQVEGFEADDEAPLD 397


>gi|58331980|ref|NP_001011139.1| eukaryotic translation initiation factor 4A1 [Xenopus (Silurana)
           tropicalis]
 gi|54261694|gb|AAH84468.1| eukaryotic translation initiation factor 4A, isoform 1 [Xenopus
           (Silurana) tropicalis]
 gi|89267437|emb|CAJ82477.1| eukaryotic translation initiation factor 4A, isoform 1 [Xenopus
           (Silurana) tropicalis]
          Length = 406

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 199/378 (52%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 33  SFDDMSLSESLLRGIYAYGFEKPSAIQQRAIMPCIKGYDVIAQAQSGTGKTATFAISILQ 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E      +    L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 93  QIELDMKATQA---LVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQS 149

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q 
Sbjct: 150 EAPHIVVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLSSNAQV 209

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L      
Sbjct: 210 VLLSATMPADVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL--Y 267

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 268 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLI 327

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V ++D + +  I
Sbjct: 328 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEDDKRTLKDI 387

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      V+ +  +++ L
Sbjct: 388 ETFYNTTVEEMPMNVADL 405


>gi|239978905|ref|ZP_04701429.1| putative DEAD-box RNA helicase [Streptomyces albus J1074]
 gi|291450788|ref|ZP_06590178.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291353737|gb|EFE80639.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
          Length = 538

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 120/358 (33%), Positives = 183/358 (51%), Gaps = 4/358 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L L   ++ A+   G  +P PIQ  T+P  L   D+ G  +TG+GKT +F L +L  
Sbjct: 80  FAELELPEPLLTALAAEGMAEPFPIQAATLPNSLAGRDILGRGRTGSGKTLAFGLALLAR 139

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA    P  L+L PTRELA QV D    Y K   L +A ++GG+    Q   L RG
Sbjct: 140 TAGRRAEAGAPLALVLVPTRELAQQVTDALTPYAKALGLRMATVVGGLSLNKQASALRRG 199

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +V++ TPGR+ D  +RG   ++ + + V+DEAD+M DMGF+P +  +        Q +L
Sbjct: 200 TEVVVATPGRLKDLLDRGDCRLDQVAVSVLDEADQMTDMGFMPQVTALLDRTAPDGQRML 259

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++   +L +P    V+  +    T+EH  +       KK   L+      
Sbjct: 260 FSATLDRNIDRLVRGYLSDPVVHSVDPSAGAVTTMEHHVLYVADDTDKKAVALR----IA 315

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F + K++       L   G    A+HG   Q  R + L  FK G +  +VA+
Sbjct: 316 ARDGRVIMFVDTKRSADRFAKRLLANGVRASALHGGRSQPQRNRTLEQFKNGQVTALVAT 375

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++AARG+ + D+  V N D P   ++Y+HR GRT RAG  G   TLV  E+ + +  +
Sbjct: 376 NVAARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPEEKREMTRL 433


>gi|298208437|ref|YP_003716616.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
 gi|83848360|gb|EAP86229.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
          Length = 372

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 119/366 (32%), Positives = 200/366 (54%), Gaps = 7/366 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
            F+DLG+SPK+V  + + G + PT IQ + IP++L++  D  G AQTGTGKTA++ LPML
Sbjct: 3   TFSDLGISPKLVKGLTELGIINPTEIQEQAIPVLLEKPTDFVGQAQTGTGKTAAYGLPML 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
            ++   +  V+    L+L PTRELA QV+    K+ K  +   +  +  G   + Q K L
Sbjct: 63  ELINASKNHVQ---ALVLCPTRELAMQVSKQLFKFTKYSDKIFSETVYGGAQIDKQIKAL 119

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +R   +++ TPGR++D   +  + + N++ +V+DEAD ML MGF   +  I S +P T+ 
Sbjct: 120 QRPTHIIVATPGRLVDLMKKKVVDLTNVKTVVLDEADEMLSMGFKKDLDTILSALPATKN 179

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
             LFSAT+ + ++++  + L +       +  +                 K         
Sbjct: 180 RWLFSATLPEGIRQIINSHLSSNAIKIKVSGKNVVNKKIEHKYILVEDADK--LTTLLQY 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                 + GI+FC  K     L   L  +  S  AIHG++ Q+ R K++  FK  +++++
Sbjct: 238 LKFKGKERGIVFCKTKNTTKTLAKQLIAKNISADAIHGDLLQKERDKVMRAFKNESLRIL 297

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+DL ARG+D+ D+  V ++++P++ E Y HR GRT RAG+ G +  +V  +++K +  
Sbjct: 298 VATDLTARGIDVEDLAFVVHYELPSQDEFYTHRSGRTARAGKEGMSLAIVNSKELKQLRF 357

Query: 360 IEKLIE 365
            EK + 
Sbjct: 358 FEKTLG 363


>gi|167385227|ref|XP_001737255.1| ATP-dependent RNA helicase DDX55 [Entamoeba dispar SAW760]
 gi|165899983|gb|EDR26453.1| ATP-dependent RNA helicase DDX55, putative [Entamoeba dispar
           SAW760]
          Length = 499

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 105/384 (27%), Positives = 189/384 (49%), Gaps = 15/384 (3%)

Query: 2   DFADL--GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           +F      L  + +  + + G++KPT +Q   IP  L R DV   +QTG+GKT SF++P+
Sbjct: 4   EFEQFHPSLRKETIDTIKEFGFIKPTEVQKVVIPAFLNRKDVIVQSQTGSGKTLSFLIPL 63

Query: 60  L--TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI--GGIPFEAQ 115
                 E+     +    +I+ PTRELA Q+ D  + + K++N+T+ LL     I    +
Sbjct: 64  FEIIKREREIIEKKEVYGIIISPTRELAHQIYDITKVFCKHFNMTIGLLTGGIDISKLEE 123

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             K      V        +      +L  NN+E+L++DE D+M++MGF   I +I   +P
Sbjct: 124 EMKKGANIIVGTAGRIEEVITNKLFELEWNNVEVLILDEGDKMIEMGFSQSITHIICHLP 183

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R+T LFSATM  EL K      +NP +I+++  + T  ++ + +     +   +  + 
Sbjct: 184 KQRRTGLFSATMPKELNKFIIAGCRNPYKIQISNDTLTPISLANEYCIIPYEIKIQTLIR 243

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVN-----LCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
                    +   ++ C+Q   + N            +   + +IHG + Q +R K++  
Sbjct: 244 ILKDSKDKKIVIFVLTCDQVNYIYNIIKILHQEEGYLKEKEIFSIHGKVKQINRDKVIKK 303

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+E    +++ +D+ ARG+D  ++ ++  +D P   + YIHR+GRT R G  G +   ++
Sbjct: 304 FEESLEAILICTDILARGMDFNNINYIIQYDPPQDPKTYIHRVGRTARMGSIGHSLIFLS 363

Query: 351 KEDIKHIDAIE----KLIEKKVDW 370
             +   I  +E    K+IEKK++ 
Sbjct: 364 PLEKSFILLMEKKNVKIIEKKIER 387


>gi|322496407|emb|CBZ31477.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 678

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 110/384 (28%), Positives = 173/384 (45%), Gaps = 17/384 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  ++P VV A+   G     P+Q  T   +++  DV   A+TG+GKT +F +P++  
Sbjct: 88  FSEFEMNPIVVKALQSRGIESMFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVER 147

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L        R R P  +I  PTRELA QV D          +T   L GG+ +  Q + L
Sbjct: 148 LLKLPSHFTRGRGPAAVIFCPTRELAIQVQDVLCGISCGLVVT--ALYGGVAYANQERVL 205

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL------ 173
             G D+++ TPGR  D   +G L  + + +  +DEAD MLD+GF   I+ + S       
Sbjct: 206 RSGVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNG 265

Query: 174 ----VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                    QTLLFSAT+ + +   S           V   +    +    +        
Sbjct: 266 SVGAERPVHQTLLFSATVPEWVHTCSFIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSE 325

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
               L   +          ++F N KK+  +L  +  K         G++ Q  R   + 
Sbjct: 326 ISSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNTKLDSQCLH--GDMQQEQRESTMK 383

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F++    +++A+D+AARGLD+P V  V     P+  + +IHR GRTGRAGR G    L 
Sbjct: 384 SFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLY 443

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNG 373
              +   ++ IE+  + K D L  
Sbjct: 444 QPREEYVVERIERHAKMKFDVLPA 467


>gi|321398908|emb|CAM65330.2| putative nucleolar RNA helicase II [Leishmania infantum JPCM5]
          Length = 678

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 110/384 (28%), Positives = 173/384 (45%), Gaps = 17/384 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  ++P VV A+   G     P+Q  T   +++  DV   A+TG+GKT +F +P++  
Sbjct: 88  FSEFEMNPIVVKALQSRGIESMFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVER 147

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L        R R P  +I  PTRELA QV D          +T   L GG+ +  Q + L
Sbjct: 148 LLKLPSHFTRGRGPAAVIFCPTRELAIQVQDVLCGISCGLVVT--ALYGGVAYANQERVL 205

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL------ 173
             G D+++ TPGR  D   +G L  + + +  +DEAD MLD+GF   I+ + S       
Sbjct: 206 RSGVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNG 265

Query: 174 ----VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                    QTLLFSAT+ + +   S           V   +    +    +        
Sbjct: 266 SVGAERPVHQTLLFSATVPEWVHTCSFIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSE 325

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
               L   +          ++F N KK+  +L  +  K         G++ Q  R   + 
Sbjct: 326 ISSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNTKLDSQCLH--GDMQQEQRESTMK 383

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F++    +++A+D+AARGLD+P V  V     P+  + +IHR GRTGRAGR G    L 
Sbjct: 384 SFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLY 443

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNG 373
              +   ++ IE+  + K D L  
Sbjct: 444 QPREEYVVERIERHAKMKFDVLPA 467


>gi|255720512|ref|XP_002556536.1| KLTH0H15686p [Lachancea thermotolerans]
 gi|238942502|emb|CAR30674.1| KLTH0H15686p [Lachancea thermotolerans]
          Length = 439

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 91/375 (24%), Positives = 150/375 (40%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P++  A++D G+  P+ +Q  TIP  +   DV   A++G GKTA FVL  L  
Sbjct: 57  FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 116

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLE 120
           L+     V +                   F KY       +           E    K  
Sbjct: 117 LDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPITKDAELLKNKET 176

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+           ++   L +    ++ +    + ++G    +Q+I    P  +Q 
Sbjct: 177 APHIVVATPGRLKALVRDKIIDLSSVKNFVIDECDKVLEELGMRKDVQDIFRATPRDKQV 236

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ E++ +   FLQNP  I V+  +         +     +  K        L 
Sbjct: 237 MMFSATLSQEMRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNR--KLAQLL 294

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF         L   L    F    +HG + Q  R+     FKE   ++ V
Sbjct: 295 DDLEFNQVIIFVKSTNRANELTKLLNASNFPAITVHGGMKQEERIARYKAFKEFEKRICV 354

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           ++D+  RG+DI  +    N+D+P+ A+ Y+HR+GR GR G  G A + V   ED + +  
Sbjct: 355 STDVFGRGIDIERINLAINYDLPSEADQYLHRVGRAGRFGTKGLAISFVATSEDEEILAK 414

Query: 360 IEKLIEKKVDWLNGD 374
           I+   + KV     +
Sbjct: 415 IQDRFDVKVAEFPEE 429


>gi|146076715|ref|XP_001462984.1| nucleolar RNA helicase II [Leishmania infantum JPCM5]
          Length = 629

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 110/384 (28%), Positives = 173/384 (45%), Gaps = 17/384 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  ++P VV A+   G     P+Q  T   +++  DV   A+TG+GKT +F +P++  
Sbjct: 88  FSEFEMNPIVVKALQSRGIESMFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVER 147

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L        R R P  +I  PTRELA QV D          +T   L GG+ +  Q + L
Sbjct: 148 LLKLPSHFTRGRGPAAVIFCPTRELAIQVQDVLCGISCGLVVT--ALYGGVAYANQERVL 205

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL------ 173
             G D+++ TPGR  D   +G L  + + +  +DEAD MLD+GF   I+ + S       
Sbjct: 206 RSGVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNG 265

Query: 174 ----VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                    QTLLFSAT+ + +   S           V   +    +    +        
Sbjct: 266 SVGAERPVHQTLLFSATVPEWVHTCSFIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSE 325

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
               L   +          ++F N KK+  +L  +  K         G++ Q  R   + 
Sbjct: 326 ISSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNTKLDSQCLH--GDMQQEQRESTMK 383

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F++    +++A+D+AARGLD+P V  V     P+  + +IHR GRTGRAGR G    L 
Sbjct: 384 SFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLY 443

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNG 373
              +   ++ IE+  + K D L  
Sbjct: 444 QPREEYVVERIERHAKMKFDVLPA 467


>gi|332186811|ref|ZP_08388553.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
 gi|332013144|gb|EGI55207.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
          Length = 580

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 145/483 (30%), Positives = 236/483 (48%), Gaps = 40/483 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+   L P +  A+   GY  PTP+Q   I    Q  D+   AQTG+GKT +F L M 
Sbjct: 1   MPFSA--LPPVLSAALSARGYAAPTPVQAAVIEDDAQGRDLIVSAQTGSGKTVAFGLAMA 58

Query: 61  TILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
           + L +G   +     P  L++ PTRELA QV+   E         +A  +GG+    + +
Sbjct: 59  SELLQGADHLPPAGAPMALVIAPTRELALQVSRELEWLYAGARARIATCVGGMDASRERR 118

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  GA +++ TPGR+ DH  RG L +++++ +V+DEAD MLDMGF   ++ I    P  
Sbjct: 119 ALNHGAHIVVGTPGRLRDHLERGALDLSSLKFVVLDEADEMLDMGFREDLEQILDATPTE 178

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           R+TLLFSATM   + ++++ +  N KRIE  +       I +  V       +   +   
Sbjct: 179 RRTLLFSATMPRPIVQLAKRYQTNAKRIETISEDKGHADIAYQVVTVAPADIEAAVVNLL 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                   +  I+FC  + NV +L  SL ++GFS  A+ G   Q  R   L   ++G  +
Sbjct: 239 ---RLHEAEVAILFCATRDNVRHLHASLVERGFSAVALSGEHSQNERNHALQALRDGRAR 295

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA------- 350
           + VA+D+AARG+D+P +  V + ++P  AE   HR GRTGRAGR G A  +V        
Sbjct: 296 VCVATDVAARGIDLPGLTLVIHVEIPRDAEALQHRSGRTGRAGRKGTAILIVPYPRRRRV 355

Query: 351 ---------KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401
                      + +    +E++ E+  + L   L++L  P+E +D A    A +   +  
Sbjct: 356 EGMLRGARIDAEWRRAPTLEEIREQDRERL---LTALLAPVE-VDEADRELATR---LLA 408

Query: 402 KSTGFDRRKKNYSSQKSHIPLKES--EKISKLQQDIQENDADSLGFRGNM-------PAF 452
           + +  D       + ++ +P  E   E  +   ++ +E   D++ FR ++       P +
Sbjct: 409 EKSAEDIAAALVRAHRAALPQAEELVEGDAPPPRERREGFDDTVWFRMSVGRRQNADPRW 468

Query: 453 MLP 455
           +LP
Sbjct: 469 LLP 471


>gi|306826916|ref|ZP_07460216.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           pyogenes ATCC 10782]
 gi|304430934|gb|EFM33943.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           pyogenes ATCC 10782]
          Length = 453

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 117/366 (31%), Positives = 184/366 (50%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ + G+V PT +Q + IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDYHFKQYIQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNK 117
             L++ +A V++    I  P+RELA Q+ D  ++  K++   + L              K
Sbjct: 61  EKLDETKAEVQVV---ITAPSRELATQIFDACKQIAKHFQEEIRLANYVGGTDKLRQIEK 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++     V+DEAD  +DMGF+  +  I + +P +
Sbjct: 118 LKGSQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASLPKS 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVIEQIKTKTVIADTI---DNWLVSTKGRDKNGQLL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         ++F N K+   +L   L   G  V  IHG I  R R +I++  K+   +
Sbjct: 235 EILKTMQPYMAMLFVNTKERADDLHAFLTANGLKVAKIHGGIPPRERKRIMNQVKKLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 KELEKM 360


>gi|255730427|ref|XP_002550138.1| eukaryotic initiation factor 4A [Candida tropicalis MYA-3404]
 gi|240132095|gb|EER31653.1| eukaryotic initiation factor 4A [Candida tropicalis MYA-3404]
          Length = 397

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 133/377 (35%), Positives = 199/377 (52%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L P +V  +   GY  P+ IQ + I  + +  DV   AQ+GTGKTA+F +  L 
Sbjct: 24  KFDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++     +    LIL PTRELA Q+ +     G   N+TV   IGG       +    
Sbjct: 84  RIDENEKSTQA---LILAPTRELALQIKNVITAIGLYLNVTVHASIGGTSMSDDIEAFRS 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+ D   R     + +++ ++DEAD ML  GF   I NI  L+P T Q +
Sbjct: 141 GVQIVVGTPGRVYDMIERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQVV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  E+ +V+  F+ NP RI V     T E I+  ++    +  K   L       
Sbjct: 201 LLSATMPQEVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVELEEYKFDCLCDL--YD 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN +  V  L + L +Q F+V AIH ++ Q  R  I+  F+ G+ +++++
Sbjct: 259 SISVTQAVIFCNTRTKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILIS 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V   D+  +  IE
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGTMREIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    +++ +  D+ SL
Sbjct: 379 KFYSTQIEEMPADIGSL 395


>gi|117645912|emb|CAL38423.1| hypothetical protein [synthetic construct]
 gi|208967749|dbj|BAG72520.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [synthetic construct]
          Length = 619

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 115/404 (28%), Positives = 186/404 (46%), Gaps = 12/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF    L   +   +  +GY  PTPIQ++ IP+ L   D+   A TG+GKTA+F+LP+ 
Sbjct: 203 IDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPV- 261

Query: 61  TILEKGRARVRMPRTLILEPTRE-LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +     + P  LIL PTRE          E       +   LL+GG+P   Q  +L
Sbjct: 262 --IMRALFESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRL 319

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   V+I TPGR+LD   +  + +  ++I+V+DEAD ML MGF   + +I   +P   Q
Sbjct: 320 QQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQ 379

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+L SAT+   +++++   L NP RI     +     +    +       KK        
Sbjct: 380 TILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILND 439

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +    +    +      +  G    +IH    Q  R  IL    EG  +++
Sbjct: 440 KKLFKPPVLVFVDCKLGADLLSEAVQKITGLKRISIHSEKPQIERKNILKGLLEGDYEVV 499

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +  RGLD+  V  V NFD+P+  + Y+H+IGR GR G++G A T +     +    
Sbjct: 500 VSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWD 559

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           I K ++     L   L  LN P        H+  RK     +++
Sbjct: 560 IAKRVKPTGSILPPQL--LNSP------YLHDQKRKEQQKDKQT 595


>gi|332088088|gb|EGI93213.1| ATP-dependent RNA helicase srmB [Shigella boydii 5216-82]
          Length = 442

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 143/427 (33%), Positives = 215/427 (50%), Gaps = 6/427 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILEKGRARVRMP 73
           A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP +  +L+  R +   P
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +      D+++ T GR+
Sbjct: 78  RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT-MTDELQ 192
           L +          +E L++DEADRMLDMGF   I++I     + +QTLLFSAT   D +Q
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
             +E  L++P  +  N  +   + I   +        K        L  Q      I+F 
Sbjct: 198 DFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTAL--LVHLLKQPEAPRSIVFV 255

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
            +++ V  L + L + G + C + G + Q  R + +    EG + ++VA+D+AARG+DIP
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
           DV HVFNFD+P   + Y+HRIGRT RAGR G A +LV   D   +  + + IE+ +    
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 375

Query: 373 GDL--SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISK 430
            D        P EK                +K+    R KK +   K+    ++      
Sbjct: 376 IDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKPRVKKRHRDTKNIGKRRKPSGTGV 435

Query: 431 LQQDIQE 437
             Q  +E
Sbjct: 436 PPQTTEE 442


>gi|320011360|gb|ADW06210.1| DEAD/DEAH box helicase domain protein [Streptomyces flavogriseus
           ATCC 33331]
          Length = 571

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 125/389 (32%), Positives = 194/389 (49%), Gaps = 6/389 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L +   ++  +   G  +P PIQ  T+P  L   D+ G  +TG+GKT +F L +L 
Sbjct: 63  SFDALDMPAALLKTLAAQGVTEPFPIQGATLPNSLAGRDILGRGRTGSGKTLAFGLALLA 122

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                R+    P  L+L PTRELA QV D    Y    NL VA ++GG+    Q+  L R
Sbjct: 123 RTAGRRSEPHAPLALVLVPTRELAQQVTDALTPYATAVNLRVATVVGGMSISRQSGALRR 182

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+VL+ TPGR+ D   RG   ++ + I V+DEAD+M DMGF+P +  +   V    Q +
Sbjct: 183 GAEVLVATPGRLKDLIERGDCRLDAVSITVLDEADQMADMGFMPQVVALLKQVEPDGQRM 242

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   + ++ + FL +P    V+  +    T+EH  +    +  KK    +     
Sbjct: 243 LFSATLDKNIDRLVKMFLTDPVVHSVDPSAGAVTTMEHHVLHVADETDKKAVATR----I 298

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F + K+        L   G    A+HG   Q  R + L  FK G +  +VA
Sbjct: 299 AARDGRVIMFVDTKRGADRFAKRLLASGVRAAALHGGRSQPQRNRTLDQFKNGQVTALVA 358

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +++AARG+ + D+  V N D P   ++Y+HR GRT RAG  G   TLV  ++ + +  + 
Sbjct: 359 TNVAARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPDEKRDMTRL- 417

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
            + +  +  L   + S +  L +I  A+ 
Sbjct: 418 -MQDAGIAPLTTRIKSSDEELSRITGARE 445


>gi|312172469|emb|CBX80726.1| ATP-dependent RNA helicase dbpA [Erwinia amylovora ATCC BAA-2158]
          Length = 459

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 134/405 (33%), Positives = 216/405 (53%), Gaps = 16/405 (3%)

Query: 3   FADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY+  TP+Q +++P +L   DV   A+TG+GKTA+F L ++ 
Sbjct: 4   FSTLTQLPASQIDNLNELGYLAMTPVQAESLPAILAGRDVRAQAKTGSGKTAAFGLGVMH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++  +    + + L+L PTRELA QV     +  +  +    L + G  P  AQ   L 
Sbjct: 64  RVDASQ---YVTQALVLCPTRELADQVTKELRRLARFTSNIKILTLCGGQPVGAQRDSLL 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILDH  R  L ++ I  LV+DEADRML+MGF   I  I S  P TRQT
Sbjct: 121 HAPHIVVGTPGRILDHLQRETLKLDAINTLVLDEADRMLEMGFREDIDAIISHSPQTRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    + +      Q+ +R  +   +     +       Y   S++       L 
Sbjct: 181 LLFSATWPQAIAQ----ISQSIQRNPLTIETGDVSDLPAIEQTFYEAASREKLTALIGLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+    + ++FCN K+   ++ ++L+K   S   +HG+++QR R ++L  F  G+ +++V
Sbjct: 237 SERQPSSCVVFCNTKRECDDIAYALDKAQISAQPLHGDLEQRERDQMLIRFANGSCRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+ +    E ++HRIGRT RAG+ G A + VA +++    A+
Sbjct: 297 ATDVAARGLDIKALAMVVNYQLSFDPEVHVHRIGRTARAGQEGCAVSFVAPDEMIRAHAL 356

Query: 361 EKLIEKKVDWLNGDLSSLN-----PPLEKIDIAQHNHARKNNPIP 400
           E  +++K+ W N  LS+L      P L ++     +  RK    P
Sbjct: 357 EDYLQQKLLWCN--LSALKSVAARPLLAEMVTVSLDGGRKAKIRP 399


>gi|74006740|ref|XP_861512.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 10 [Canis familiaris]
          Length = 640

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 127/396 (32%), Positives = 201/396 (50%), Gaps = 43/396 (10%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F+D+ +   ++  +    Y +PTP+Q   IP++ ++ D+   AQTG+GKTA+F+LP+  
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 60  -------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                        +    +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 241 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 300

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 301 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 360

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      R T++FSAT   E+Q ++ +FL     + V    ST+E I     
Sbjct: 361 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENI----- 415

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                                     ++F   KK   +L   L  +G++  +IHG+  QR
Sbjct: 416 -------------------TQKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 456

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+HRIGRTGR G  
Sbjct: 457 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 516

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   + +I     +  L+ +    +   L ++
Sbjct: 517 GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 552


>gi|167527009|ref|XP_001747837.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773586|gb|EDQ87224.1| predicted protein [Monosiga brevicollis MX1]
          Length = 532

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 130/372 (34%), Positives = 199/372 (53%), Gaps = 15/372 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +FA  GL   +   +  A Y  PTP+Q  +IP+V  + D+   AQTG+GKTA+F++P+  
Sbjct: 161 EFATAGLCELMTGNLELARYTVPTPVQKYSIPIVQAKRDLMACAQTGSGKTAAFLVPILN 220

Query: 60  -------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112
                  +      R   + P  LIL PTRELA Q+    +K+     + +  + GG   
Sbjct: 221 RVYETGPVPPPPNARRSQQFPVALILAPTRELAIQIYGEAQKFSYRSRVRICCVYGGASP 280

Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
             Q + L RG  +L+ TPGR++D   RG + +++I  LV+DEADRMLDMGF P I+ I  
Sbjct: 281 RDQIQDLRRGCQLLVATPGRLVDFMERGVIGLDSIRFLVLDEADRMLDMGFEPQIRRIVE 340

Query: 173 LVPFTR----QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
                +    QTL+FSAT   ++Q ++++FL +   + V    ST+E I+          
Sbjct: 341 EDNMPQVGIRQTLMFSATFPKDIQMLAQDFLDDYVHLSVGRVGSTSENIQQIVHWIDEAD 400

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
            +       L+ +  +    +IF   KK    L + L  QG    +IHG+  Q  R + L
Sbjct: 401 KRPSL--LDLISAASSEDLFLIFVETKKAADALEYYLTMQGRPATSIHGDRTQYEREEAL 458

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           ++F+ G   ++VA+ +AARGLDIP+V HV NFD+P+  + Y+HRIGRTGRAG  G A + 
Sbjct: 459 ADFRAGRRPILVATAVAARGLDIPNVKHVINFDLPSDIDEYVHRIGRTGRAGHKGTAVSF 518

Query: 349 VAKEDIKHIDAI 360
              ++      +
Sbjct: 519 FNDKNRNVARDL 530


>gi|259506519|ref|ZP_05749421.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
 gi|259165939|gb|EEW50493.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
          Length = 424

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 140/367 (38%), Positives = 208/367 (56%), Gaps = 4/367 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG++ ++  A+   G      IQ  T+P+ L  HD+ G A+TG GKT  F +P+L 
Sbjct: 9   TFTELGVAAEITDALDALGIRHTFAIQEYTLPIALDGHDLIGQARTGMGKTYGFGVPLLD 68

Query: 62  ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +        +   PR L++ PTRELA QV ++ E+   N  L V    GG P+E Q   
Sbjct: 69  RVFDSADIEEIDGTPRALVIVPTRELAVQVGEDLERAAVNLPLKVFTFYGGTPYEEQIDA 128

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE G DV++ TPGR+LD + RG L ++ + ILV+DEAD MLD+GF+P I+ I   +    
Sbjct: 129 LETGVDVVVGTPGRLLDLYQRGALRLDKVAILVLDEADEMLDLGFLPDIEKIMRALTHKH 188

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATM   +  ++ +FL  P  I   +  S A       +   A    K A+  ++
Sbjct: 189 QTMLFSATMPGPILTLARSFLDKPVHIRAESADSAATHATTRQIVFQAHRMDKEAVTARI 248

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ++      IIF   K+    +   L  +GF+V ++HG++ Q +R + L+ F+ G I +
Sbjct: 249 LQARGRG-KTIIFARTKRTAAQVAEDLAARGFTVGSVHGDMGQPARERSLNAFRSGKIDI 307

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+DI DV HV N+  P+    Y+HRIGRTGRAG  G A TLV  +++    
Sbjct: 308 LVATDVAARGIDIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGTAVTLVGYDELLKWT 367

Query: 359 AIEKLIE 365
           AI   +E
Sbjct: 368 AINNELE 374


>gi|87240993|gb|ABD32851.1| Helicase, C-terminal; Zinc finger, CCHC-type; GUCT [Medicago
           truncatula]
          Length = 753

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 205/378 (54%), Gaps = 8/378 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +D + L L  ++V ++ D G  +  PIQ   +   L+  D+   A+TGTGKT +F +P++
Sbjct: 108 LDISKLDLPSQLVDSLRDRGITQLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPII 167

Query: 61  TILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
             L+ G      +R R+PR L+L PTRELA QV    ++           + GG+ +  Q
Sbjct: 168 NGLDDGQDSGPYSRRRLPRALVLAPTRELAKQVEKEIKESAPYL--KTVCIYGGVSYVTQ 225

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
              L RG DV++ TPGR++D  N   L ++ +E LV+DEAD+ML +GF   ++ I   +P
Sbjct: 226 QSALSRGVDVVVGTPGRLIDLINGNTLKLSEVEYLVLDEADQMLAVGFEEDVEVILEKLP 285

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQ++LFSATM   ++K++  +L NP  I++               A  A  + K  +L
Sbjct: 286 AKRQSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAISATSTSKRTIL 345

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             L+         I+F   K++             +  A+HG+I Q  R + L+ F++G 
Sbjct: 346 SDLITVYAKGGKTIVFTQTKRDADE-VSLALTNSITSEALHGDISQHQRERTLNGFRQGK 404

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
             ++VA+D+A+RGLDIP+V  + ++++PN  E ++HR GRTGRAG+ G A  +      +
Sbjct: 405 FTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKLGTAILMFTGSQRR 464

Query: 356 HIDAIEKLIEKKVDWLNG 373
            + ++E+ +  K +++N 
Sbjct: 465 TVRSLERDVGCKFEFVNA 482


>gi|226366438|ref|YP_002784221.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
 gi|226244928|dbj|BAH55276.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
          Length = 465

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 132/414 (31%), Positives = 207/414 (50%), Gaps = 9/414 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL   +  A+   G   P PIQ  TIP VL   DV G A TG+GKT +F LPML 
Sbjct: 15  TFLALGLPAVMTHALDRGGIAAPFPIQAATIPDVLAGRDVLGRAPTGSGKTLAFGLPMLV 74

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+   +R   PR ++L PTRELA Q+    ++   +  L VA ++GG+P + Q + L R
Sbjct: 75  RLKGAASRRGYPRGVVLVPTRELALQIERALDEPALSVGLRVANVVGGVPIKRQAETLSR 134

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+L+ TPGR+ DH  +G + ++++ +L +DEAD M D+GF+P +  I    P   Q L
Sbjct: 135 GVDLLVATPGRLADHLAQGSVSLDDVTVLALDEADHMADLGFLPQVTTILDKTPAGGQRL 194

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++  +   +L  P        ++   T+ H  +    +              
Sbjct: 195 LFSATLDGDVDTLVRRYLHEPVTHSTAPAAAAVPTMRHHLLYVDRRDKYSVVAHI----- 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F   K  V  +   L   G +  A+HG   Q +R + L++F +GT  ++VA
Sbjct: 250 GSRPGRTLMFVRTKHGVDRVAQELHAAGVAAGALHGGKAQNNRTRTLASFADGTTPVLVA 309

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ +  +  V + D P  A++Y+HR GRT RAG  G   TLV +++     A+E
Sbjct: 310 TDVAARGIHVDGITLVVHVDPPTEAKDYLHRAGRTARAGESGVVVTLVTEDERA---AVE 366

Query: 362 KLIEKK-VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           KL  +  +D     +   +  L +I  A+    +       ++   D  KK   
Sbjct: 367 KLTRQAGLDITATPVRPGDRVLAEITGARRPTGKAVPAPDTRAPAQDTPKKGRQ 420


>gi|319792321|ref|YP_004153961.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS]
 gi|315594784|gb|ADU35850.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
          Length = 667

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 132/452 (29%), Positives = 219/452 (48%), Gaps = 53/452 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH----------DVCGIAQTGTGKT 52
           F  LGL+P+++ AV D G+ +PT +Q K IPL +             D+   +QTG+GKT
Sbjct: 79  FIRLGLAPELIAAVADLGFTQPTTVQDKVIPLAMGGEAGQDGKARFVDLMVSSQTGSGKT 138

Query: 53  ASFVLPMLT---------------------------------------ILEKGRARVRMP 73
           A+F+LP+L                                               +   P
Sbjct: 139 AAFLLPVLHTLLKRQAEAEAEAKAEFQRLAAEAAARGEAAPKKPKRKDPTNTRHFKAATP 198

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
             LIL PTRELA QVA +  +  ++        + G           + AD+++ TPGR+
Sbjct: 199 GALILCPTRELAQQVAHDAIELVRHCRGLRIANVVGGMPYQLQIAKLQNADLVVATPGRL 258

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193
           LD     +L ++ ++ LV+DEADRMLD+GF   +  +  L    +QT++FSAT    +Q+
Sbjct: 259 LDLQRSQQLKLDQVKFLVVDEADRMLDLGFSDDLAEVNQLTIERQQTMMFSATFAPRIQQ 318

Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253
           +++  ++ P+R+ +++P      I+           K+            ++   I+F +
Sbjct: 319 LAQRVMREPQRVTIDSPQEKHANIKQSLYWADNSQHKRKL--LDHWLRDTSINQAIVFAS 376

Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313
            +     L + L+++GFS  A+HG + Q  R + L   ++G +Q++VA+D+AARG+D+P 
Sbjct: 377 TQVECDGLANDLQQEGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVAARGIDVPT 436

Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWL 371
           + HVFNF +P +AE+Y HRIGRTGRAGR G A T     D + I  IE+   +  K + +
Sbjct: 437 ITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAITFAEFRDRRKIMDIEQYSRQQFKAEVV 496

Query: 372 NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
            G       P  +  + ++   R +N    + 
Sbjct: 497 AGLEPQQRMPQSRPPMGEYRGGRGDNQSRDRK 528


>gi|302812373|ref|XP_002987874.1| hypothetical protein SELMODRAFT_447130 [Selaginella moellendorffii]
 gi|300144493|gb|EFJ11177.1| hypothetical protein SELMODRAFT_447130 [Selaginella moellendorffii]
          Length = 483

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 95/385 (24%), Positives = 173/385 (44%), Gaps = 20/385 (5%)

Query: 2   DFADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQ--RHDVCGIAQTGTGKTASFVLP 58
            F +L +S  ++  +  +  + +P+ IQ +T+PL++     ++   A  G+GKT  FVL 
Sbjct: 82  TFEELKISEPLLRGIYSEMKFERPSKIQAETLPLIMNPPHRNLVAQAHNGSGKTTCFVLG 141

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           ML+ +         P+ L + PTRELA Q     E+  +   +T   +I        + +
Sbjct: 142 MLSRVNTSLHE---PQALCVCPTRELALQNQAVLERMARFTQITSTCIIPPTENIKSSLR 198

Query: 119 LERGADVLICTPG--RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
                 V+  TPG        +R   + +   ++  +    +   GF  +   +   +  
Sbjct: 199 GHIHDQVIFGTPGSLERAILNDRNLDVQHLNVLVFDEADHMLDQNGFRDFSMKLLRRINK 258

Query: 177 TRQTLL---FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
              +     FSAT +++++      +    R+ V     + + I+   V    + +K   
Sbjct: 259 QAPSCQLLLFSATFSEKVKNFVSKSIPIANRVFVEKLELSLDVIKQYRVNCPTERAKFEV 318

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L  ++    + +   IIF   +++V  L   LE  G    +IHG      R KI+  F++
Sbjct: 319 LKDRIYPIAEKLGQSIIFAESRRSVTELHEKLEADGHKCSSIHGGYKPDVRDKIIDEFRQ 378

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVP--------NRAENYIHRIGRTGRAGRHGKA 345
           G  ++++++D+ +RG D+  V  V NFD+P           E Y+HRIGR+GR GR G A
Sbjct: 379 GITRILISTDVLSRGFDVAQVTLVVNFDLPLARDYHKQPDYETYLHRIGRSGRFGRKGAA 438

Query: 346 FTL-VAKEDIKHIDAIEKLIEKKVD 369
           F L V +ED + +  IE+   K + 
Sbjct: 439 FNLVVTQEDTRMLTLIEEHFGKTIP 463


>gi|218198307|gb|EEC80734.1| hypothetical protein OsI_23209 [Oryza sativa Indica Group]
          Length = 921

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 102/375 (27%), Positives = 168/375 (44%), Gaps = 14/375 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LSP  +  V  AGY + T +Q  T+P++L+  DV   A+TGTGKT +F+LP + +
Sbjct: 455 FDECSLSPLTLKGVKAAGYERMTAVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPAIEV 514

Query: 63  ----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                   R + R P ++++       A  A         ++ ++ + +         ++
Sbjct: 515 VSKLPPIDRDQKRPPISVVVVCPTRELADQAAAEANKLLKFHPSIGVQLVIGGTRMALEQ 574

Query: 119 LERGADVLICTPGRILDHFNRGKLLM------NNIEILVIDEADRMLDMGFIPYIQNITS 172
                +             +  +           +++L++DEADR+LDMGF   I+ I +
Sbjct: 575 KRMHTNPCQILVATPGRLKDHMENTPGFATRLMGVKVLILDEADRLLDMGFRTDIERIVA 634

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +P  RQTLLFSAT+ DE+++V    ++            + ET              K 
Sbjct: 635 ALPKQRQTLLFSATVPDEVRQVCHIAMKRDLEFVNTVEEGSEETHSQVKQMHVVAPLDKQ 694

Query: 233 ALLQQ----LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
             +         S++     I+FC   K    +   L +   +V  IH    Q  R +I 
Sbjct: 695 FSILYGLLTDHISENVDYKVIVFCTTAKVTSLVAELLSELKLNVREIHSRKPQSYRTRIS 754

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
             FKE    ++V+SD++ARG+D P+V  V    VP   E YIHR+GRTGR G  G    L
Sbjct: 755 KEFKESKGLILVSSDVSARGVDYPNVTLVVQMGVPTDREQYIHRLGRTGRRGNEGSGILL 814

Query: 349 VAKEDIKHIDAIEKL 363
           +A  +   + +I+ L
Sbjct: 815 LAPWEEYFLRSIKDL 829


>gi|195493167|ref|XP_002094300.1| GE20271 [Drosophila yakuba]
 gi|194180401|gb|EDW94012.1| GE20271 [Drosophila yakuba]
          Length = 1057

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 106/462 (22%), Positives = 198/462 (42%), Gaps = 17/462 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  ++  +    +V PT IQ   IP+ L   D+   +++GTGKT  +V+  + 
Sbjct: 26  TFEELRLSRNLLNGLKRHNFVTPTKIQAAAIPMALTNMDLIVQSKSGTGKTLIYVIAAMQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                  R   P  LI+ PTRELA QV D F    ++Y         G    A++++  +
Sbjct: 86  GYHAKMTR---PHALIVVPTRELAIQVQDTFFYLCESYRDFKCSAFIGGTEVAKDRRRMQ 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + ++I TPGR+L  +    L ++ + +LV+DEAD++     +    +         + +
Sbjct: 143 ASRIIIGTPGRLLHLYQNRVLDVSKLGLLVLDEADQLYQTKSLQDTVSKLIQALPKNRQI 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ----- 236
           +  +   D+   V    + N   +  N+  +T       FV    Q +     ++     
Sbjct: 203 IACSATYDQDLDVRLAKIMNKPMLISNSERATVLLGIRQFVYELPQQTNSVEEMRLKLKV 262

Query: 237 -QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              + +Q   +  ++F + +    +  + L   G     I G ++Q  R+ +   ++  T
Sbjct: 263 LAQIFNQLPYEQAVLFASSQMRADSYKNYLTASGIECHLISGAMEQSERLNVFEGYRNFT 322

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDI 354
           ++ +VA+DL ARG+D P    V N D P     Y+HRIGR GR G  G A T + ++++ 
Sbjct: 323 MRTLVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRFGSKGIAITFIASEKES 382

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN---HARKNNPIPQKSTGFDRRKK 411
           +    + + +      L      +       D  ++N   + ++ NP+ +        KK
Sbjct: 383 QKFREMSRKVATAWSVLEFPKEPMPKEFNFWDFEKYNFGYYIKEENPLQEMPVKHKVPKK 442

Query: 412 NYSSQKSHI--PLKESEKISKLQQDIQ--ENDADSLGFRGNM 449
           +   +K     P K +    KL   ++  E+  D      N+
Sbjct: 443 DIVGKKPEKRDPEKSNVVAEKLPVALENVESPKDKEQKSNNV 484


>gi|1764094|gb|AAB39865.1| ATP-dependent RNA helicase [Leishmania amazonensis]
          Length = 855

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 118/381 (30%), Positives = 196/381 (51%), Gaps = 9/381 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   ++ A+L  G+  PTPIQ K IP +LQ +DV  +A+TG+GKTA+F++PML  
Sbjct: 26  FQSFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLNT 85

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L K  +++   R L+L PTREL+ Q+  N     K  +L  A L+GG   + Q + L   
Sbjct: 86  L-KAHSKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDSMDQQFELLASN 144

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D+++ TPGR+L       L + ++  LV+DEADR+ ++G  P I  I   +P + Q  L
Sbjct: 145 PDIVVATPGRLLHIMEEASLHLTSVRCLVLDEADRLFELGLQPQIGAIMQKLPESCQRAL 204

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK-----CALLQQ 237
           FSATM   L + +  +L NP  I +++    ++ ++                     +  
Sbjct: 205 FSATMPTVLAEFTSAWLHNPVVIRLDSEMKLSDQLKQSAFLVRNDEKVAALIVLLKRVLH 264

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           + ++       +IF   K +V  L   L     S  A+HG +DQ +R   + +F +    
Sbjct: 265 VGEAAANNAQALIFVESKFHVEFLLMILTAYSISTSAVHGQMDQEARRLAVRSFAKRESS 324

Query: 298 LMVASDLAARGLDIP-DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           +MV +D+AARG  +   + ++  F  P   + ++HR+GR  RAGR G A++++  ED  +
Sbjct: 325 VMVVTDVAARGYGLDLLLDNIVYFSFPFNPKLFVHRVGRVARAGRSGTAYSIMTFEDFPY 384

Query: 357 IDAIEKLIEKKVD--WLNGDL 375
              + + I + +    + GDL
Sbjct: 385 YVDLMQFIGRPLQSSPVPGDL 405


>gi|168000763|ref|XP_001753085.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695784|gb|EDQ82126.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 638

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 122/363 (33%), Positives = 198/363 (54%), Gaps = 8/363 (2%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
             LG+S  +V A+   G     PIQ   +   ++  D+   A+TGTGKT +F +P++  +
Sbjct: 29  DSLGVSEDIVNALAKRGITHLFPIQRAVLEPAMKGQDLIARAKTGTGKTLAFGIPIIQHI 88

Query: 64  EKGR-----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                       R PR L+L PTRELA QV   F +      L+   + GG+    Q ++
Sbjct: 89  IDAHKESAPRHGRSPRALVLAPTRELAKQVEREFMESAP--MLSTVCVYGGVSISMQQRQ 146

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LERG D+ + TPGRI+D  +RG L + N+  LV+DEAD+ML +GF   ++ I   +P  R
Sbjct: 147 LERGVDIAVGTPGRIIDLIDRGSLKLQNVNFLVLDEADQMLAVGFEEDVERILQQLPKNR 206

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q++LFSATM   ++++S  +L  P  I +   +          +A     + K ++L  L
Sbjct: 207 QSMLFSATMPKWVKELSGKYLNRPLMINLVGDADDKLAEGITNLAIQLPATAKRSILSDL 266

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +         I+F   K++  ++  +      +  A+HG+I Q  R K L+ F+EG I +
Sbjct: 267 ITVHAKGGKTIVFTQTKRDADDVAMA-MGNLVACGALHGDISQLQREKTLNAFREGNITV 325

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLD+P+V  V ++++PN +E ++HR GRTGRAG+ G    +   + ++ + 
Sbjct: 326 LVATDVAARGLDVPNVDLVIHYEIPNDSETFVHRTGRTGRAGKTGTNILMFTNQQMRTMR 385

Query: 359 AIE 361
            IE
Sbjct: 386 TIE 388


>gi|160380616|sp|A6ZUA1|DBP3_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP3; AltName: Full=DEAD
           box protein 3; AltName: Full=Helicase CA3
 gi|151943729|gb|EDN62039.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
          Length = 523

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 108/406 (26%), Positives = 190/406 (46%), Gaps = 7/406 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L L   +   +    + KPTPIQ    P +L   DV G+A+TG+GKT +F +P +
Sbjct: 114 LSFDYLSLDSSIQAEISK--FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAI 171

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + L     + R  + L++ PTRELA+Q+ DN         +    + GG+P + Q  +L+
Sbjct: 172 SHL-MNDQKKRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLK 230

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   V+      +         L     +++ +    +           I       RQT
Sbjct: 231 KSQVVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQT 290

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV----ATYAQYSKKCALLQ 236
           L+F+AT   E+++++  F+ NP ++ +              +        +  K   LL+
Sbjct: 291 LMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLK 350

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           +        +  +IF   KK    +  +L+  G+++ AIHG++ Q+ R + L+ FK G  
Sbjct: 351 KYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNIAAIHGDLSQQQRTQALNEFKSGKS 410

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            L++A+D+AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG+ G A TL  +++   
Sbjct: 411 NLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEKHL 470

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
              +  ++      +  DL       +K + + +    K+  + +K
Sbjct: 471 AGGLVNVLNGANQPVPEDLIKFGTHTKKKEHSAYGSFFKDVDLTKK 516


>gi|154332025|ref|XP_001561829.1| nucleolar RNA helicase II [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134059150|emb|CAM36848.1| putative nucleolar RNA helicase II [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 689

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 111/384 (28%), Positives = 175/384 (45%), Gaps = 17/384 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  ++P VV A+   G     P+Q  T   +++  DV   A+TG+GKT +F +P++  
Sbjct: 88  FSEFEMNPIVVKALQSRGIESMFPVQALTFNAIMRNADVLVQARTGSGKTLAFGIPIVER 147

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L   +    R R P  +I  PTRELA QV D          +T   L GG+ +  Q + L
Sbjct: 148 LLKLQSHLTRGRGPAAVIFCPTRELAIQVQDVLCGISCGLIVT--ALYGGVAYANQERVL 205

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-- 177
             G D+++ TPGR  D   +G L  + + +  +DEAD MLD+GF   I+ + S V     
Sbjct: 206 RSGVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNG 265

Query: 178 --------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                    QTLLFSAT+ + +   S           V   +    +    +        
Sbjct: 266 STSAEKTVHQTLLFSATVPEWVHTCSFIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSE 325

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
               L   +          ++F N KK+  +L  +  K         G++ Q  R   + 
Sbjct: 326 ISSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNTKLDSQCLH--GDMQQEQRESTMK 383

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F++    +++A+D+AARGLD+P V  V     P+  + +IHR GRTGRAGR G    L 
Sbjct: 384 SFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLY 443

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNG 373
              +   ++ IE+  + K D L  
Sbjct: 444 QPREEYVVERIERHAKMKFDVLPA 467


>gi|52077088|dbj|BAD46119.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|53791928|dbj|BAD54190.1| putative RNA helicase [Oryza sativa Japonica Group]
          Length = 562

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 99/371 (26%), Positives = 164/371 (44%), Gaps = 15/371 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LSP  +  V  AGY + T +Q  T+P++L+  DV   A+TGTGKT +F+LP + +
Sbjct: 81  FDECSLSPLTLKGVKAAGYERMTAVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPAIEV 140

Query: 63  ----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                     + R P ++++       A  A         ++ ++ + +         ++
Sbjct: 141 VSKLPPIDCDKKRPPISVVVVCPTRELADQAAAEANKLLKFHPSIGVQLVIGGTRMALEQ 200

Query: 119 LERGADVLICTPGRILDHFNRGKLLM------NNIEILVIDEADRMLDMGFIPYIQNITS 172
                +             +  +           +++L++DEADR+LDMGF   I+ I +
Sbjct: 201 KRMHTNPCQILVATPGRLKDHMENTPGFATRLMGVKVLILDEADRLLDMGFRTDIERIVA 260

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +P  RQTLLFSAT+ DE+++V    ++            + ET                
Sbjct: 261 ALPKQRQTLLFSATVPDEVRQVCHIAMKRDLEFVNTVEEGSEETHSQVKQMHV-----VA 315

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L +Q       + + I      K    +   L +   +V  IH    Q  R +I   FK
Sbjct: 316 PLDKQFSILYGLLTDHISENVDYKVTSLVAELLSELKLNVREIHSRKPQSYRTRISKEFK 375

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           E    ++V+SD++ARG+D P+V  V    VP   E YIHR+GRTGR G  G    L+A  
Sbjct: 376 ESKGLILVSSDVSARGVDYPNVTLVVQMGVPTDREQYIHRLGRTGRRGNEGSGILLLAPW 435

Query: 353 DIKHIDAIEKL 363
           +   + +I+ L
Sbjct: 436 EEYFLRSIKDL 446


>gi|328855473|gb|EGG04599.1| hypothetical protein MELLADRAFT_78286 [Melampsora larici-populina
           98AG31]
          Length = 646

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 128/396 (32%), Positives = 201/396 (50%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58
           +F +  + P ++  +  A Y  PTP+Q  ++P+V    D+   AQTG+GKT  F+ P   
Sbjct: 161 EFTNPPMDPHLLANIELARYKTPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPIIS 220

Query: 59  ------------MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
                       M         R   P  LIL PTREL +Q+ +   K+     +  A++
Sbjct: 221 AAFAKGPLPTAGMQAQGGGYGKRKAFPTALILAPTRELVSQIHEEARKFTYRSWVRPAVV 280

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q +++E G D+L  TPGR++D   RG++ ++NI  LV+DEADRMLDMGF P 
Sbjct: 281 YGGAEVGQQLRQIENGCDLLSATPGRLVDLIERGRISLSNIRYLVLDEADRMLDMGFEPQ 340

Query: 167 IQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQTL+FSAT   ++Q ++++FL++   + V    ST+E I     
Sbjct: 341 IRRIVTGEDMPGVHERQTLMFSATFPRDIQMLAKDFLKDYIFLSVGRVGSTSENITQKVE 400

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +       +L S       ++F   K+    L   L    F+  +IHG+  QR
Sbjct: 401 YVEDADKRSVL--LDILTSMPQGGLTLVFVETKRMADMLEGFLVSSNFAATSIHGDRTQR 458

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+     +MVA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  
Sbjct: 459 ERERALETFRSSRTPIMVATAVAARGLDIPNVTHVVNYDLPSDIDDYVHRIGRTGRAGNT 518

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G +     + +   +  + +L+ +    +   L  +
Sbjct: 519 GVSTAFFNRGNKNIVRELIELLREAHQEIPDWLEVV 554


>gi|332251086|ref|XP_003274677.1| PREDICTED: eukaryotic initiation factor 4A-I isoform 1 [Nomascus
           leucogenys]
          Length = 410

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 123/380 (32%), Positives = 201/380 (52%), Gaps = 6/380 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 33  SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E     ++  + L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 93  QIEL---DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 149

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q 
Sbjct: 150 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 209

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY--SKKCALLQQL 238
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +    +        
Sbjct: 210 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVETRGGAPEWKLDTLCD 269

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L    T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++
Sbjct: 270 LYKTLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRV 329

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V +ED + + 
Sbjct: 330 LITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLR 389

Query: 359 AIEKLIEKKVDWLNGDLSSL 378
            IE      ++ +  +++ L
Sbjct: 390 DIETFYNTSIEEMPLNVADL 409


>gi|323173106|gb|EFZ58737.1| ATP-dependent RNA helicase srmB [Escherichia coli LT-68]
          Length = 442

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 143/427 (33%), Positives = 215/427 (50%), Gaps = 6/427 (1%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILEKGRARVRMP 73
           A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP +  +L+  R +   P
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +      D+++ T GR+
Sbjct: 78  RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT-MTDELQ 192
           L +          +E L++DEADRMLDMGF   I++I     + +QTLLFSAT   D +Q
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
             +E  L++P  +  N  +   + I   +        K        L  Q      I+F 
Sbjct: 198 DFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTAL--LVHLLKQPEATRSIVFV 255

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
            +++ V  L + L + G + C + G + Q  R + +    EG + ++VA+D+AARG+DIP
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
           DV HVFNFD+P   + Y+HRIGRT RAGR G A +LV   D   +  + + IE+ +    
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 375

Query: 373 GDL--SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISK 430
            D        P EK                +K+    R KK +   K+    ++      
Sbjct: 376 IDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKPRVKKRHRDTKNIGKRRKPSGTGV 435

Query: 431 LQQDIQE 437
             Q  +E
Sbjct: 436 PPQTTEE 442


>gi|159036117|ref|YP_001535370.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           arenicola CNS-205]
 gi|157914952|gb|ABV96379.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
           CNS-205]
          Length = 548

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 134/393 (34%), Positives = 211/393 (53%), Gaps = 12/393 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG   + V A+  AG  +   IQ   +P+ L+  D+ G A TGTGKT  F +P+L 
Sbjct: 26  TFAELGARQETVDALAAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGVPLLE 85

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +          P+ L++ PTREL  QVA + +  G    + V  + GG+ +E Q + L 
Sbjct: 86  QVLAPAEGGDGTPQALVVVPTRELGIQVAKDLQAAGSTRGVRVLPIYGGVAYEPQIEALR 145

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G ++L+ TPGR+LD   +  L ++ +  LV+DEADRMLD+GF+  ++ I +++P  RQT
Sbjct: 146 SGVEILVGTPGRLLDLAKQKHLKLDRVRALVLDEADRMLDLGFLDDVERILAILPEDRQT 205

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM D +  +S  FL+ P  I     + T  + +   +A       K  ++ ++LQ
Sbjct: 206 MLFSATMPDPIVALSRRFLRRPVTIHAGHTAETGPSPQTQQLAYRTHSLNKIEIVARILQ 265

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      I    ++     +   L+ +GF+V A+HG++ Q +R + L  F+ G I  +V
Sbjct: 266 ARGRGLTMIFTRTKRA-ADRVAADLDFRGFAVAAVHGDLGQGARERALRAFRTGKIDTLV 324

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV N+D P   + Y HRIGRTGRAG  G A T V  +D+     I
Sbjct: 325 ATDVAARGIDVSGVTHVLNYDCPEDQDTYTHRIGRTGRAGASGVAVTFVDWDDMPRWRII 384

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           +K +             +  P E    + H +A
Sbjct: 385 DKTLGL----------DMPEPPETYHTSPHLYA 407


>gi|239818170|ref|YP_002947080.1| ATP-dependent RNA helicase DbpA [Variovorax paradoxus S110]
 gi|239804747|gb|ACS21814.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
          Length = 476

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 138/403 (34%), Positives = 210/403 (52%), Gaps = 18/403 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA L LSP+++  +   GY + T IQ   +P  L   D+   A+TG+GKTA+F L +L+ 
Sbjct: 17  FATLALSPQMLANLTQLGYTQMTAIQAAALPPALLGKDLIAQAKTGSGKTAAFALALLSN 76

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L     R    + ++L PTRELA QV     +  +       + +  G+    Q   LE 
Sbjct: 77  L---NPRRFAIQAMVLCPTRELADQVTTEIRRLARAEENIKVVTLCGGVALRGQIASLEH 133

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI+DH  R  L +  +  LV+DEADRMLDMGF   I  +    P  RQTL
Sbjct: 134 GAHIVVGTPGRIMDHLERENLNLEALNTLVLDEADRMLDMGFFDDIVKVARQCPKERQTL 193

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  + + K+++ F++NP++I V      ++         Y     +      LL  
Sbjct: 194 LFSATYPEGIAKLAQQFMKNPEQITVQAQHEGSKI----RQRWYQVKESERLHAVSLLLD 249

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                + + FCN K+   +L   L+ QGFS  A+ G ++QR R ++L  F   +  ++VA
Sbjct: 250 HFRPVSTLAFCNTKQQCRDLVEVLQGQGFSALALFGELEQRERDQVLVQFANRSCSVLVA 309

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR----HGKAFTLVAKEDIKHI 357
           +D+AARGLDI  +  V N DV   AE +IHRIGRTGR G+     G A  L + +++  +
Sbjct: 310 TDVAARGLDIAQLEAVINVDVTPDAEIHIHRIGRTGRVGQQGGAEGLALNLASMDEMGSV 369

Query: 358 DAIEKLIEKKVDWLN-GDL-----SSLNPPLEKIDIAQHNHAR 394
             IE+L  ++ +W    +L     + L PP+  + I      +
Sbjct: 370 GKIEQLQGRESEWHPLAELTPAQGAPLAPPMATLQIVGGRKEK 412


>gi|297200725|ref|ZP_06918122.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
 gi|197712294|gb|EDY56328.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 721

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 150/452 (33%), Positives = 223/452 (49%), Gaps = 12/452 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L
Sbjct: 28  VTFASLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTL 87

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  GR     PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LE
Sbjct: 88  ARLSGGRTEKHRPRAVILTPTRELAMQVADALQPYGDQLGLKMKVVCGGTSMSNQIYALE 147

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVL+ TPGR+ D  NRG   + +IE+ VIDEAD+M D+GF+P +  +   VP   Q 
Sbjct: 148 RGVDVLVATPGRLRDLINRGACSLQDIEVAVIDEADQMSDLGFLPEVTELLDQVPAGGQR 207

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM +E+  + + +L NP   EV++      T+ H  +       K          
Sbjct: 208 MLFSATMENEISTLVKRYLSNPVTHEVDSAQGNVTTMSHHILIV-----KPKDKAPVTAA 262

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   +     +   L + G    A+HG + Q +R + L++FK+G +  +V
Sbjct: 263 IASRKGRTIIFVRTQLGADRIAEQLRESGVKADALHGGMTQGARTRTLADFKDGYVNALV 322

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L      +    I
Sbjct: 323 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLSLPHQRRQ---I 379

Query: 361 EKLIEKK-VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS-SQKS 418
            +L+E   VD     ++S     E  ++A+   AR    +  +S     ++     +Q +
Sbjct: 380 FRLMEDAGVDAGRHIINS-GTAFEP-EVAEITGARSMTEVQSESAANAAQQAEREVAQLT 437

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMP 450
               +   + ++L+++     A +   RG  P
Sbjct: 438 KELERAQRRATELREEADRLVARAARERGEDP 469


>gi|196006533|ref|XP_002113133.1| hypothetical protein TRIADDRAFT_56998 [Trichoplax adhaerens]
 gi|190585174|gb|EDV25243.1| hypothetical protein TRIADDRAFT_56998 [Trichoplax adhaerens]
          Length = 533

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 110/381 (28%), Positives = 185/381 (48%), Gaps = 8/381 (2%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            F+ L   +S   + A+ D  +   T IQ KTIP +L   DV G A+TG+GKT +F++P 
Sbjct: 96  SFSTLKSYISENTIKAISDMSFTNMTQIQHKTIPHLLMGRDVLGAARTGSGKTLAFLIPA 155

Query: 60  LT-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  + +           +I+ PTREL+ Q         K +  T  L++GG   + + +K
Sbjct: 156 VELLHKLNFMPRTGTGIIIISPTRELSLQTYGVARDLLKYHRYTFGLIMGGANRKTEAEK 215

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L++G ++LI TPGR +    N    +  N++ L+IDEADR+L +GF   ++ I  L+P  
Sbjct: 216 LQKGVNLLIATPGRLLDHLQNTNGFVSKNLQCLIIDEADRILQIGFEDEMKQIVRLLPSR 275

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT++FSAT T  ++ ++   L+               T++          S +  LL  
Sbjct: 276 RQTVMFSATQTRNVEDLARISLKKSPLYIGVDDDRDVATVDGLEQGYVVCPSDRRFLLLF 335

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L     +V  IHG   Q+ R     +F      
Sbjct: 336 TFLKKNRNKKVMVFFSSCNSVKFHSELLNYVDLAVTDIHGRQKQQKRTATFFDFCNAKEG 395

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH-GKAFTLVAKEDIKH 356
           +++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R     G A   +  E++  
Sbjct: 396 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGENSRGHALLFLMPEELAF 455

Query: 357 IDAIEKLIEKKVDWLNGDLSS 377
           +  ++     KV     + +S
Sbjct: 456 LRYLKHA---KVPLSEYEFAS 473


>gi|167623474|ref|YP_001673768.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167353496|gb|ABZ76109.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 442

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 137/423 (32%), Positives = 226/423 (53%), Gaps = 19/423 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           DF  LGL P+++  +    Y  PT IQ  TIP VL   DV G A TG+GKTA+F LP++ 
Sbjct: 24  DFTQLGLMPELLETLKLLSYTTPTAIQSHTIPAVLNGKDVLGGAITGSGKTAAFALPIIQ 83

Query: 62  ILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQN 116
            + + + R +    +   IL PTRELA QVAD+F +Y +    NL    + GG+    Q 
Sbjct: 84  KIAQAKPRAKEGNYVSSLILVPTRELAQQVADSFMRYSQLIKPNLKTLAVYGGVSTNTQM 143

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L  GAD+++ TPGR++D  +   L ++    LV+DEADRML +GF   +  + + +P 
Sbjct: 144 LSLRGGADIVVATPGRLIDLISSNALKLDKTTTLVLDEADRMLSLGFTEELNELLAKLPK 203

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           T+QTLLFSAT  +E+++++++ L NP  +++ +   +        V    + +     L 
Sbjct: 204 TKQTLLFSATFPEEVRELTDSLLNNPVEVQLQSSEESTLVQRVITVNRNRKTA-----LL 258

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L   +  +  +IF + K +   L   LE  G +    H +  Q +R ++L  FK G I
Sbjct: 259 AELIKDNQWQQVLIFASAKYSCNRLAQKLENAGITAEVFHSDKGQGARNRVLEGFKSGEI 318

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARG+DI  +  V NF++P    +Y+HRIGR+GRAG  G A +L++ ++ +H
Sbjct: 319 SVLIATDIAARGIDIEKLPIVINFELPRSPADYMHRIGRSGRAGEAGLAMSLISHDEYQH 378

Query: 357 IDAIEKLIEKKVDW--LNGDLSSLNPP-------LEKIDIAQHNHARKNNPIPQKSTGFD 407
              IEK  + +++   + G  +    P       L+ +        +  N +P+ +    
Sbjct: 379 FKLIEKKNKLRLEREQIPGFEADAEAPEDCPSRDLKPMAKPAGTGKKNRNKLPKANADVW 438

Query: 408 RRK 410
            +K
Sbjct: 439 TKK 441


>gi|328859802|gb|EGG08910.1| hypothetical protein MELLADRAFT_34708 [Melampsora larici-populina
           98AG31]
          Length = 765

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 129/429 (30%), Positives = 205/429 (47%), Gaps = 47/429 (10%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            + +  +  +++  + + GY +P+PIQ + IPL L   D+ GIA+TG+GKTASFV+PMLT
Sbjct: 309 SWDESKIPMQILEIIDEVGYKEPSPIQRQAIPLGLNNRDLIGIAETGSGKTASFVIPMLT 368

Query: 62  ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            + K        R   P  LIL PTRELA Q+     K+          ++GG   E Q 
Sbjct: 369 YIGKLAPLTDENRHLGPYALILAPTRELAQQIESETNKFALRLGYRCVSIVGGKAMEEQA 428

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--- 173
             +  GA+++I TPGR+ D   R  L++     +V+DEADRM+++GF   +  I      
Sbjct: 429 LNMRDGAEIIIATPGRLKDCIERHVLVLGQCTYVVMDEADRMINLGFEEVVNFILDQLPL 488

Query: 174 -------------------------------VPFTRQTLLFSATMTDELQKVSENFLQNP 202
                                              RQT++FSATM   +++++  +L+ P
Sbjct: 489 SNLKPDTEEAEDSAKMTSFIGGIEGFDVSGIKGLYRQTVMFSATMPPAVERLARKYLRRP 548

Query: 203 KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLC 262
             + +       +T++        +  K        + +Q      I+F NQKK    L 
Sbjct: 549 AVVTIGVAGQAVDTVDQQVEFLPNEDKK--RGRLLEVLNQGHTPPIIVFVNQKKTADQLA 606

Query: 263 HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322
             + + G+S   +H   +Q  R   L++ + G   ++VA+DLA RG+D+P+V  V NF +
Sbjct: 607 KDISRAGWSTTTLHSGKNQEQREAALASLRAGESDILVATDLAGRGIDVPNVSLVVNFQM 666

Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPL 382
               E Y+HRIGRTGRAG+ G A T +  +D   +  +++ I K        +S   P L
Sbjct: 667 AGTIEAYVHRIGRTGRAGKVGTAITFLTNDDADVLYDLKQEITK------SPVSRCPPEL 720

Query: 383 EKIDIAQHN 391
            K + AQ  
Sbjct: 721 AKHEAAQSK 729


>gi|320166262|gb|EFW43161.1| ATP dependent RNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 633

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 134/396 (33%), Positives = 204/396 (51%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L+  +   V  A Y KPTP+Q   IP++  R D+   AQTG+GKTA+F+LP+L+
Sbjct: 172 TFRDASLADAIHSNVELASYHKPTPVQKHAIPIIHSRRDLMACAQTGSGKTAAFLLPILS 231

Query: 62  ILEKG---------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
            L K                R +      L+L PTRELA Q+ +   K+     +   ++
Sbjct: 232 NLWKQGPAVPPPRPSGPGGYRRQKTHIEALVLAPTRELAVQIYEEARKFSYRSGIRACVV 291

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + +ERG  +L+ TPGR++D   RGK+ ++N   +V+DEADRMLDMGF P 
Sbjct: 292 YGGTDIGQQLRDIERGCQLLVATPGRLMDLLERGKISLDNCRYVVLDEADRMLDMGFEPQ 351

Query: 167 IQNITSLV----PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+ I           RQ L+FSAT   E+Q ++ +FL++   + V    ST+E I    +
Sbjct: 352 IREIVEKNDLPAMGERQMLMFSATFPKEIQALARDFLEDYLFLAVGRVGSTSENITQKLI 411

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +  ++L  LL +       + F   K+   +L   L  +GF   +IHG+  QR
Sbjct: 412 WVDEHDKR--SMLLDLLSAAGPECLTLCFVETKRAADSLEDFLYHEGFPAASIHGDRSQR 469

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R   L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   + Y+HRIGRTGR G  
Sbjct: 470 EREDALRTFRSGHTPILVATAVAARGLDIPNVKHVINYDLPTEIDEYVHRIGRTGRVGNL 529

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G + +   +++      +  L+      +   L  +
Sbjct: 530 GLSTSFFNEKNRSLARELLDLLTDAGQEVPKWLDEI 565


>gi|225683798|gb|EEH22082.1| ATP-dependent RNA helicase sub2 [Paracoccidioides brasiliensis
           Pb03]
 gi|226293173|gb|EEH48593.1| ATP-dependent RNA helicase SUB2 [Paracoccidioides brasiliensis
           Pb18]
          Length = 457

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 150/371 (40%), Gaps = 5/371 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++ A+ D G+  P+ +Q   IP  +   DV   A++G GKTA FVL  L  
Sbjct: 62  FRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQ 121

Query: 63  --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                G   + +         +        +         +           E  + K  
Sbjct: 122 LEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIELLSSKDN 181

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+           ++   L +    ++ +    +  +     +Q I    P  +Q 
Sbjct: 182 YPNIVVGTPGRLNALVRDKKLSLRSIKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQV 241

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ E++ + + F++NP  + V+  +         +    ++  K   L +    
Sbjct: 242 MMFSATLSQEVRPICKKFMRNPLEVYVDDDTKLTLHGLLQYYIKLSESEKNRKLNEL--L 299

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF    +    L   L +  F   A+H  + Q  R+K    FKE   ++ V
Sbjct: 300 DSLEFNQVIIFVKSTQRATELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICV 359

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359
           A+D+  RG+DI  +    N+D+P  A++Y+HR+GR GR G  G A + V+ E D + +  
Sbjct: 360 ATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVSSEQDQEVLKD 419

Query: 360 IEKLIEKKVDW 370
           IEK  E  +  
Sbjct: 420 IEKRFEVALPR 430


>gi|299890798|ref|NP_001177749.1| probable ATP-dependent RNA helicase DDX59 isoform 1 [Rattus
           norvegicus]
 gi|149058502|gb|EDM09659.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Rattus norvegicus]
          Length = 619

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 120/420 (28%), Positives = 203/420 (48%), Gaps = 6/420 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF   G    +   +  +GY  PTPIQ++ IP+ L   D+   A TG+GKTA+F+LP+ 
Sbjct: 203 IDFEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPV- 261

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             + +     + P  LIL PTRELA Q+    ++  +    +   LL+GG+P   Q  +L
Sbjct: 262 --IIRALPEDKTPSALILTPTRELAIQIERQAKELMRGLPRMKTVLLVGGLPLPPQLYRL 319

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   V+I TPGR+LD   +  + ++ I+I+V+DEAD ML MGF   + ++    P   Q
Sbjct: 320 QQHVKVVIATPGRLLDIIEQSSVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPSDCQ 379

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+L SAT+ D + ++++  L NP RI     +    ++    +       KK        
Sbjct: 380 TVLVSATIPDSIDQLADQLLHNPVRIVTGDKNLPCSSVRQIILWVEDPAKKKKLFEILND 439

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           Q        +    +    +      +  G S  +IH    Q  R +IL    EG  +++
Sbjct: 440 QKLFKPPVLVFVDCKLGADLLSEAVQKITGLSSTSIHSEKSQVERREILKGLLEGDYEVV 499

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +  RGLD+ +V  V NFD+P+  + Y+H++GR GR G++G A T +     +    
Sbjct: 500 VSTGILGRGLDLVNVKLVVNFDMPSSLDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWD 559

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD--RRKKNYSSQK 417
           + K ++     L   L +     E+    Q    +  + +   +   D  R+ +  SSQK
Sbjct: 560 VAKRVKPTGSILPPQLLNSPYLHEQKRKEQQKDRQTQSSLVTGANLMDIIRKHEKSSSQK 619


>gi|268568714|ref|XP_002640327.1| C. briggsae CBR-GLH-1 protein [Caenorhabditis briggsae]
          Length = 795

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 115/369 (31%), Positives = 178/369 (48%), Gaps = 21/369 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D  L+  ++  V +AGY K TPIQ   +PL+   HD+   AQTG+GKTA+F+LP+++
Sbjct: 375 TFEDAKLTETMLKNVRNAGYNKTTPIQQFALPLIRDGHDIMACAQTGSGKTAAFLLPIMS 434

Query: 62  ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            L               PR +IL PTRELA Q+ +   K+     + +  + GG+     
Sbjct: 435 RLTDESDLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYN 494

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD-MGFIPYIQNITSLV 174
             ++ERGA +++ T GRI      G + ++     V+DEADRM+D MGF   I+ I    
Sbjct: 495 KSQIERGATIVVGTVGRIKHFCEEGTIKLDKCRYFVLDEADRMIDAMGFGDDIRTIVGYE 554

Query: 175 PFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
              ++      +FSAT  D +Q+ +  FL+    +        A               K
Sbjct: 555 GMPQKENRQTLMFSATFPDSVQEAAREFLRQDYSMITIDKIGAANKCVLQEFEQCEMCDK 614

Query: 231 KCA----------LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
           K                +  +    K  I+F  ++     L   L         IHG  +
Sbjct: 615 KDKLLEMLGVDLESYTTVTNADVYTKKTIVFVARRALADTLAAVLSTAQIPAITIHGARE 674

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           QR R + L +F+ G+  +++A+ +A RGLDI  V HV N+D+P+  ++YIHRIGRTGR G
Sbjct: 675 QRERSEALRHFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVG 734

Query: 341 RHGKAFTLV 349
             G+A + +
Sbjct: 735 NSGRATSFI 743


>gi|114778501|ref|ZP_01453345.1| putative ATP-dependent RNA helicase DbpA [Mariprofundus
           ferrooxydans PV-1]
 gi|114551226|gb|EAU53785.1| putative ATP-dependent RNA helicase DbpA [Mariprofundus
           ferrooxydans PV-1]
          Length = 459

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 136/402 (33%), Positives = 213/402 (52%), Gaps = 11/402 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+ L L P ++  +   GY   TPIQ +++P +L   DV    QTG+GKTA+F L +L  
Sbjct: 6   FSTLSLRPDLLDNLATLGYEAMTPIQQQSLPDILAGRDVIAQGQTGSGKTAAFGLGLLQK 65

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+  +  V+   +L+L PTRELA QVA    K  +       L +  G+PF  Q   LE 
Sbjct: 66  LDITKPHVQ---SLVLCPTRELADQVAKEIRKLARKLANIKVLTLCGGMPFGPQIGSLEH 122

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI DH NRG L ++ +  LV+DEADRML+MGF   + +I   +P  RQTL
Sbjct: 123 GAHIIVGTPGRIEDHMNRGTLKLDRVTTLVLDEADRMLEMGFQSVLDSIIGKIPKQRQTL 182

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  D++Q V++       +  +   +ST +              ++     +LL  
Sbjct: 183 LFSATFPDQIQSVAKRI---MDKPVMVAVASTHDDSSIEQHFYKVSDDEQRMTALRLLLL 239

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           Q    + ++FCN K     +  +L   GFS  A++G+++QR R +++  F   +I ++VA
Sbjct: 240 QHKPVSTLVFCNTKAETEAVAKTLVWHGFSALALNGDLEQRDRDQVMVRFANKSISVLVA 299

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARGLDI  +  V N+ + +  E ++HRIGRTGRAG  G A +L  +E+   +  + 
Sbjct: 300 TDVAARGLDIDALDAVINYHIAHDPEVHVHRIGRTGRAGSKGVACSLY-RENPYRMTVLG 358

Query: 362 KLIEKKVD---WLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
             + + ++       +L    P    +   Q    +K    P
Sbjct: 359 DYLGRVIEGETLPPAELLKQAPTRPLMTTLQIGGGKKQKIRP 400


>gi|27469538|gb|AAH41801.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Homo sapiens]
          Length = 619

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 115/404 (28%), Positives = 186/404 (46%), Gaps = 12/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF    L   +   +  +GY  PTPIQ++ IP+ L   D+   A TG+GKTA+F+LP+ 
Sbjct: 203 IDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPV- 261

Query: 61  TILEKGRARVRMPRTLILEPTRE-LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +     + P  LIL PTRE          E       +   LL+GG+P   Q  +L
Sbjct: 262 --IMRALFESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRL 319

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   V+I TPGR+LD   +  + +  ++I+V+DEAD ML MGF   + +I   +P   Q
Sbjct: 320 QQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQ 379

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+L SAT+   +++++   L NP RI     +     +    +       KK        
Sbjct: 380 TILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILND 439

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +    +    +      +  G    +IH    Q  R  IL    EG  +++
Sbjct: 440 KKLFKPPVLVFVDCKLGADLLSEAVQKITGLKRISIHSEKSQIERKNILKGLLEGDYEVV 499

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +  RGLD+  V  V NFD+P+  + Y+H+IGR GR G++G A T +     +    
Sbjct: 500 VSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWD 559

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           I K ++     L   L  LN P        H+  RK     +++
Sbjct: 560 IAKRVKPTGSILPPQL--LNSP------YLHDQKRKEQQKDKQT 595


>gi|290996680|ref|XP_002680910.1| dead box helicase protein [Naegleria gruberi]
 gi|284094532|gb|EFC48166.1| dead box helicase protein [Naegleria gruberi]
          Length = 657

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 101/364 (27%), Positives = 169/364 (46%), Gaps = 9/364 (2%)

Query: 1   MDFADL-GLSPKVVCAVL-DAGYVKPTPIQIKTIPLVL----QRHDVCGIAQTGTGKTAS 54
           M F ++ G+ P+++ ++  + G+   T IQ  TIP  L    +  D+   A TG GKT +
Sbjct: 59  MKFEEVEGIHPQLLKSLKKEFGFEYMTAIQHLTIPNALGEKGKGKDIIAQAATGQGKTLA 118

Query: 55  FVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF-E 113
           F++P L+ + +    V     ++L PTRELA Q+    +K  K+ N   A +IGG     
Sbjct: 119 FLVPSLSCMMENEKNVHGIYIMVLAPTRELALQIQTVADKLLKHTNYKAACVIGGNKVSV 178

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q +  +    VLI +PG+ LDH  R  L   +++  ++DEADR+LD GF   ++ I   
Sbjct: 179 EQAQLADPTVRVLIASPGKCLDHIQRESLDCTHLKFFILDEADRLLDSGFEETLKKIVMQ 238

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
           +P  RQT LFSATMTD++  ++   L+N           +                KK A
Sbjct: 239 LPKQRQTYLFSATMTDKVDDLAHISLKNDIMKLGLDNGGSKRVSTLEQRYYEVPNDKKMA 298

Query: 234 --LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             +          +   +      +    +  +    G  V        ++         
Sbjct: 299 ALVSVLRNNVDKKIITFVSTKLSVEFATTVLQNASGVGNVVQLSGNMTQEKRSEIFFQFM 358

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           ++    ++VA+++AARGLD P+V  +  FD+P +  +Y HR GRT RAG+ G +   +  
Sbjct: 359 EDRNPGILVATNVAARGLDFPNVDLIVQFDIPEQPADYFHRAGRTARAGKKGLSVLFLTP 418

Query: 352 EDIK 355
            + +
Sbjct: 419 REKE 422


>gi|39995299|ref|NP_951250.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens PCA]
 gi|39982061|gb|AAR33523.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens PCA]
          Length = 460

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 147/409 (35%), Positives = 214/409 (52%), Gaps = 18/409 (4%)

Query: 1   MD---FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVL 57
           M+   F+ L L   ++  +   GY + TPIQ  ++PL+L   DV   A+TG+GKTA+F +
Sbjct: 1   MNPKAFSSLRLKAPMLRNLASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGI 60

Query: 58  PMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQN 116
            +L+ L+    RV+    L+L PTRELA QV     +  +  +    L I  G+PF  Q 
Sbjct: 61  GLLSRLDALSFRVQ---ALVLCPTRELADQVGKELRRLARFTDNIKILTICGGVPFGPQL 117

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             LE GA V+I TPGR+LDH  RG L ++ +  LV+DEADRMLDMGF   I  + +  P 
Sbjct: 118 GSLEHGAHVVIGTPGRLLDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDISALIAAAPP 177

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTLLFSAT  D +           +R  V                 Y   S +     
Sbjct: 178 KRQTLLFSATYPDSIAA----MSAGVQREPVEVSVDEVHGEGAIEQVFYEVDSGQRIEAV 233

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
           + +      ++ +IFCN K     + ++L  +G++  AIHG++DQR R ++L  F   + 
Sbjct: 234 ERILGHYRPESALIFCNTKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRFANRSA 293

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+D+AARGLDI ++  V N+++    E + HRIGRTGRAG  G A +LV   + + 
Sbjct: 294 SVLVATDVAARGLDIKELSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLVTPRESRL 353

Query: 357 IDAIEKLIEKKVDWLNGDLSSL-----NPPLEKIDIAQHNHARKNNPIP 400
           I AI  +    +    GDLS+L      PPL  +     +  RKN   P
Sbjct: 354 IAAIADVPGSIIAR--GDLSTLAPLTAKPPLPPMVTLCIDGGRKNKLRP 400


>gi|51244750|ref|YP_064634.1| ATP-dependent RNA helicase (RhlE) [Desulfotalea psychrophila LSv54]
 gi|50875787|emb|CAG35627.1| related to ATP-dependent RNA helicase (RhlE) [Desulfotalea
           psychrophila LSv54]
          Length = 498

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 202/413 (48%), Gaps = 16/413 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  +   ++  + D  +   TPIQ +++  VL   D+ G A TGTGKTA F++ ++  
Sbjct: 96  FHDFAIPLPLMHGIADLKFEYCTPIQEQSLEAVLAGKDLIGKANTGTGKTAVFLVGVMAR 155

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKK 118
               +KG    R PR LIL PTREL  Q+  + +K G+   +   A+  G    +     
Sbjct: 156 LLADKKGGLGKRTPRALILAPTRELVMQIVKDAKKLGRYTGVNADAVYGGAEYEKQMELL 215

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                D+++ TPGR++D  N+  +  +N + LVIDEADRMLDMGFIP ++ I S +P  R
Sbjct: 216 KRGKTDIVVATPGRLIDFHNKRLVNFDNCQTLVIDEADRMLDMGFIPDVRRIVSWMPKKR 275

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
                  + T     V+    Q     EV    +   T +      Y   +++   +   
Sbjct: 276 DRQTLMFSAT-ISSDVNNLSAQWCVDPEVVEAEADQVTTDTVEQKVYLVTAEEKYNVLYN 334

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L  +++ +  +IF N K     L   L++       + G++ Q  R   L +F+ G +++
Sbjct: 335 LIKENSDERIMIFANMKSETRKLADRLKRNSIDCLLLSGDVPQNKRQSRLESFRTGKVKV 394

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+A RG+ I  + +V N+ +P   E+Y+HRIGRTGRAG  GK+ +   +E   ++ 
Sbjct: 395 LVATDVAGRGIHIDGISYVVNYTLPYEPEDYVHRIGRTGRAGLAGKSVSFACEEGSFYLP 454

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411
            IE+ I  K+D        + PP E +  A    A    P+      +  RKK
Sbjct: 455 DIEEYIGAKLDC-------VLPPEELLVHAPKGTA----PVAVAHKKYKPRKK 496


>gi|298705993|emb|CBJ29114.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 644

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 118/456 (25%), Positives = 201/456 (44%), Gaps = 18/456 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F+ L LS  ++ A+    +V  T IQ + IP +L   D+ G A+TG+GKT +F++P+L
Sbjct: 147 VEFSTLPLSSGMLSALAKLNFVMTTKIQAQAIPPLLAGEDMVGAAKTGSGKTLAFLVPVL 206

Query: 61  TILEKGRARVRMPR-TLILEPTRELAAQVADNFEK---YGKNYNLTVALLIGGIPFEAQN 116
             L K +   R     +I+ PTREL+ Q           G        L+ G        
Sbjct: 207 ECLHKVKWSHRNGTACIIISPTRELSLQTYGVLRDVIENGNLKQTHGLLIGGANRRAEAE 266

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + ++    +++     +    N    L  N+++LVIDEADR+L+ GF   +  I  L+P 
Sbjct: 267 RLVKGVNVLVVTPGRLLDHLQNTKGFLFRNMQMLVIDEADRILEQGFEEEMHQIIKLLPK 326

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSAT T +++ ++   ++N         +    T++          S K  LL 
Sbjct: 327 ERQTMLFSATQTKKVEDLARLSIRNKPVYVGVDDAEQESTVDGLEQGYVVCPSDKRFLLL 386

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                ++  K  ++F +   +V      L      V  IHG   Q+ R      F +   
Sbjct: 387 FTFLKKNRKKKIMVFFSSCNSVKFHSELLNYIDMPVMDIHGRQKQQKRTTSFFQFCKQDT 446

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIK 355
            +++ +D+AARGLDIP V  +  FD P++   YIHR+GRT R     G+A   +  E++ 
Sbjct: 447 GVLLCTDVAARGLDIPAVDWIIQFDPPDQTAEYIHRVGRTARGQSGKGRALLFLLPEEVG 506

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415
            +  +              L+    P++K+   Q   +R        +       ++Y  
Sbjct: 507 FLRYLRTA--------KAKLNEYEFPVKKVANVQSQLSRLIEKNYYLNKSAREAYRSYLL 558

Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPA 451
             S   LK+   + +L  D+Q   A +  F   +P 
Sbjct: 559 AYSSHSLKDIYDVHEL--DLQ---AVARAFGFTVPP 589


>gi|239940491|ref|ZP_04692428.1| putative DEAD-box RNA helicase [Streptomyces roseosporus NRRL
           15998]
 gi|239986972|ref|ZP_04707636.1| putative DEAD-box RNA helicase [Streptomyces roseosporus NRRL
           11379]
 gi|291443920|ref|ZP_06583310.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291346867|gb|EFE73771.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 539

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 121/358 (33%), Positives = 185/358 (51%), Gaps = 4/358 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +   ++  +   G  +P PIQ  T+P  L   D+ G  +TG+GKT +F L +L  
Sbjct: 84  FADLDMPAALLKTLAAQGVTEPFPIQGATLPNSLAGRDILGRGRTGSGKTLAFGLALLAR 143

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               R+  R P  ++L PTRELA QV D    Y    NL +A ++GG+    Q+  L RG
Sbjct: 144 TAGRRSEPRAPLAMVLVPTRELAQQVTDALTPYATAVNLRLATVVGGMSITKQSATLRRG 203

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+VL+ TPGR+ D   RG   ++ + I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 204 AEVLVATPGRLKDLIERGDCRLDQVAITVLDEADQMADMGFMPQVVALLKQVEADGQRML 263

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++ + FL +P    V+  +    T+EH  +    +  KK    +      
Sbjct: 264 FSATLDKNIDRLVKMFLTDPVVHSVDPSAGAVTTMEHHVLHVLDETDKKAVATK----IA 319

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F + K+        L   G    A+HG   Q  R + L  FK G +  +VA+
Sbjct: 320 ARDGRVIMFVDTKRAADRFAKRLLASGVRAAALHGGRSQPQRNRTLDQFKNGQVTALVAT 379

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++AARG+ + D+  V N D P   ++Y+HR GRT RAG  G   TLV  ++ + +  +
Sbjct: 380 NVAARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPDEKREMTRL 437


>gi|145592945|ref|YP_001157242.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           tropica CNB-440]
 gi|145302282|gb|ABP52864.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440]
          Length = 621

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 138/405 (34%), Positives = 217/405 (53%), Gaps = 14/405 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG   + V A+  AG  +   IQ   +P+ L+  D+ G A TGTGKT  F +P+L 
Sbjct: 98  TFAELGARKETVDALNAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGVPLLE 157

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +          P+ L++ PTREL  QVA +    G    + V  + GG+ +E Q + L 
Sbjct: 158 RVFAPAEGGDGTPQALVVVPTRELGIQVAKDLHAAGSTRGVRVLPIYGGVAYEPQIEALR 217

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G ++L+ TPGR+LD   + +L ++ +  LV+DEADRMLD+GF+  ++ I +++P  RQT
Sbjct: 218 TGVEILVGTPGRLLDLAKQKQLKLDRVRALVLDEADRMLDLGFLDDVEKILAMLPEERQT 277

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM D +  +S  FL+ P  I     + T  + +   +A       K  ++ ++LQ
Sbjct: 278 MLFSATMPDPIVALSRRFLRRPVTIHAGHTAETGPSPQTQQLAYRTHSLNKIEIVARILQ 337

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           ++      I    ++     +   L+ +GF+V A+HG++ Q +R + L  F+ G I  +V
Sbjct: 338 AKGRGLTMIFTRTKRA-ADRVAADLDFRGFAVAAVHGDLGQGARERALRAFRTGKIDTLV 396

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V HV N+D P   + Y HRIGRTGRAG  G A T V  +D+     I
Sbjct: 397 ATDVAARGIDVSGVTHVLNYDCPEDQDTYTHRIGRTGRAGASGVAVTFVDWDDMPRWRII 456

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
           +K +  ++            P E    + H +A     IP + TG
Sbjct: 457 DKTLGLEMPE----------PPETYHTSPHLYA--ELDIPSEVTG 489


>gi|169773155|ref|XP_001821046.1| ATP-dependent RNA helicase DBP10 [Aspergillus oryzae RIB40]
 gi|238491104|ref|XP_002376789.1| ATP dependent RNA helicase (Dbp10), putative [Aspergillus flavus
           NRRL3357]
 gi|91208275|sp|Q2UHC1|DBP10_ASPOR RecName: Full=ATP-dependent RNA helicase dbp10
 gi|83768907|dbj|BAE59044.1| unnamed protein product [Aspergillus oryzae]
 gi|220697202|gb|EED53543.1| ATP dependent RNA helicase (Dbp10), putative [Aspergillus flavus
           NRRL3357]
          Length = 929

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 124/406 (30%), Positives = 199/406 (49%), Gaps = 41/406 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIP+++   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 91  FQAMGLNAHLLKAITRKGFSVPTPIQRKTIPVIMDGQDVVGMARTGSGKTAAFVIPMIEK 150

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +V   R LIL P+RELA Q     ++ GK  +L   LL+GG   E Q   +   
Sbjct: 151 LKSHSTKVGA-RGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFSLMAGN 209

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P  RQTLL
Sbjct: 210 PDIVIATPGRFLHLKVEMNLDLSSIRYVVFDEADRLFEMGFADQLTEILYGLPANRQTLL 269

Query: 183 FSATMTDELQKV----------------------------------------SENFLQNP 202
           FSAT+   L +                                                 
Sbjct: 270 FSATLPKSLVEFARAGLQEPTLIRLDTESKISPDLENVFFSVKSSEKEGALLHILHEVIK 329

Query: 203 KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLC 262
                   +   +           +  K+        Q   T  + I+F   K +V  L 
Sbjct: 330 MPTGPTEAAQRQKEQGDGKNFKNFKKRKRGDDKAINFQESPTKYSTIVFAATKHHVDYLY 389

Query: 263 HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322
             L + GF+V   +G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D 
Sbjct: 390 SLLREAGFAVSYAYGSLDQTARKIQVQNFRAGLSNILVVTDVAARGIDIPILANVINYDF 449

Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           P++ + ++HR+GRT RAGR G +++LV   D  ++  ++  + +++
Sbjct: 450 PSQPKIFVHRVGRTARAGRKGWSYSLVRDADAPYMLDLQLFLGRRL 495


>gi|56202232|dbj|BAD73664.1| putative DEAD box protein [Oryza sativa Japonica Group]
 gi|56202381|dbj|BAD73793.1| putative DEAD box protein [Oryza sativa Japonica Group]
          Length = 423

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 112/406 (27%), Positives = 191/406 (47%), Gaps = 20/406 (4%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
            G+  PT IQ + IP  LQ  DV G+ QTG+GKTA+F LP++  L +   R       +L
Sbjct: 1   MGWKAPTRIQAEVIPFALQGRDVIGVGQTGSGKTAAFALPIIQALLEHEHRPCF-FACVL 59

Query: 79  EPTRELAAQVADNFEKYG----------KNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
            PTRELA Q+A  FE  G             +    L           +  +     +  
Sbjct: 60  APTRELAIQIAKQFEALGSAISLQCSVVWWRSSRACLPEHLRKGFDSWQLWKERNSRVGT 119

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
               +    N      N ++ LV+DEAD +L + F   + +I +++P  R+T LFSATMT
Sbjct: 120 PGRLLDHLTNTKGFSFNKLKYLVLDEADDLLKVDFQKAVDDILNVIPKERRTFLFSATMT 179

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
           ++++K+    L+NP ++EV +  S  +T+       Y   +K        + ++      
Sbjct: 180 EKVKKLRRACLKNPVKVEVASKYSLVDTL---RQDLYVVPAKYKDCYLIHVLNKMPGSMI 236

Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           ++F    ++   L   L    F   +I G + Q  R+  L+ F+     ++V +D+A+RG
Sbjct: 237 MVFVRTCESTRLLALMLRNLRFKAISISGQMSQDKRLGALNRFRTRDCNILVCTDVASRG 296

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI-EKK 367
           LDI  V  V N+D P  +++YIHR+GRT RAG+ G A +LV + + +     E+ +  ++
Sbjct: 297 LDIQGVDVVINYDFPLNSKDYIHRVGRTARAGQSGYAVSLVNQFEGEFFKLTEQFLGGEE 356

Query: 368 VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           +     D   +    E+I  ++    +  N      +G+ +R +  
Sbjct: 357 IPARKVDADEIMILHERIYDSKRIALKTMNE-----SGYHKRMRRR 397


>gi|21219042|ref|NP_624821.1| DEAD-box RNA-helicase [Streptomyces coelicolor A3(2)]
 gi|5763955|emb|CAB53334.1| putative DEAD-box RNA-helicase [Streptomyces coelicolor A3(2)]
          Length = 439

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 122/359 (33%), Positives = 189/359 (52%), Gaps = 5/359 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL P +V  +   G  +P PIQ  T+P  L   DV G A+TG+GKT +F L +L 
Sbjct: 8   SFDGLGLPPVLVETMTSLGVTRPFPIQAATLPEALAGRDVLGRARTGSGKTLAFGLALLA 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                RA  + P  L+L  TRELA QV+D    Y +   + +  ++GG+    Q + L  
Sbjct: 68  GTAGRRAEPKRPLALVLVSTRELAQQVSDALAPYARALGVRLTTVVGGLSINRQTQALRD 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+V++ TPGR+ D  +R    +N + I V+DEAD+M D+GF+P +  I   VP   Q L
Sbjct: 128 GAEVVVATPGRLTDLVSRRDCHLNQVRITVLDEADQMCDLGFLPQVSGILDQVPSDGQRL 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ ++  + L +P  + V+  S++  T+EH  +  +              + 
Sbjct: 188 LFSATLDGDVDQLVRDHLHDPVPVSVDPASASVSTMEHHVLTVHPADK-----YATATEI 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F + K  V      L   G S  A+H    Q  R   L+ F EG + ++VA
Sbjct: 243 AARDGRVLMFLDTKAGVDRFTRELRAAGVSAGALHSGKSQPQRTHTLARFVEGGVTVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +++AARG+ + D+  V N D P  A++Y+HR GRT RAGR G   TLV  +  + ++ +
Sbjct: 303 TNVAARGIHVDDLDLVVNVDPPADAKDYLHRGGRTARAGRAGSVVTLVTPDQRREVNRM 361


>gi|221118846|ref|XP_002163229.1| PREDICTED: similar to Eukaryotic initiation factor 4A-II [Hydra
           magnipapillata]
          Length = 409

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 206/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L   ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 37  NFDDMNLQENLLRGIFAYGFEKPSAIQQRAIMPAIKGYDVIAQAQSGTGKTATFSIAILQ 96

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L+      +    L+L PTRELA Q+       G    + V   IGG         L  
Sbjct: 97  KLDLSNFNAQ---ALVLAPTRELAQQIQKVIMALGDYQKVKVHGCIGGTAVRQDLDVLNA 153

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  +RG L  +++++ ++DEAD ML  GF   I ++   +P + Q +
Sbjct: 154 GVHVVVGTPGRVFDMISRGALNTDSLKMFILDEADEMLSRGFKDQIYDVFRRLPSSIQVI 213

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM D++ +V++ F+++P  I V     T E I+  F+    +  K        L  
Sbjct: 214 LLSATMPDDVLEVTKRFMRDPINILVKKEELTLEGIKQFFINVEKEEWKLE--TLTDLYD 271

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IF N ++ V  L   L ++ F+V ++HG++DQ  R  I+  F+ G+ ++++ 
Sbjct: 272 TMTITQAVIFLNTRRKVDWLKEKLNEKLFTVSSMHGDMDQSERDLIMKEFRSGSSRVLIT 331

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V++ED++ +  IE
Sbjct: 332 TDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVSQEDVRVLKDIE 391

Query: 362 KLIEKKVDWLNGDLSSL 378
                K++ +  +++ L
Sbjct: 392 TFYNTKIEEMPMNVADL 408


>gi|145607341|ref|XP_361705.2| hypothetical protein MGG_04179 [Magnaporthe oryzae 70-15]
 gi|152013475|sp|A4R5B8|DBP10_MAGO7 RecName: Full=ATP-dependent RNA helicase DBP10
 gi|145014915|gb|EDJ99483.1| hypothetical protein MGG_04179 [Magnaporthe oryzae 70-15]
          Length = 914

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 128/398 (32%), Positives = 210/398 (52%), Gaps = 33/398 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+P ++ A+   G+  PTPIQ K+IPL+L R DV G+A+TG+GKTA+FV+PM+  
Sbjct: 92  FQAMGLNPSLLQAITRKGFAVPTPIQRKSIPLILDRRDVVGMARTGSGKTAAFVIPMIER 151

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L    ARV   R LI+ P+RELA Q     +++GK  +L   LL+GG   E Q   +   
Sbjct: 152 LRAHSARVGA-RALIMSPSRELALQTLKVVKEFGKGTDLKTVLLVGGDSLEDQFGFMTTN 210

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 211 PDIIIATPGRFLHLKVEMSLDLSSIKYVVFDEADRLFEMGFATQLTEILHSLPPSRQTLL 270

Query: 183 FSATMTDELQKVSENFLQNP--------------------------------KRIEVNTP 210
           FSAT+   L + +   LQ+P                                  ++    
Sbjct: 271 FSATLPRSLVEFARAGLQDPSLVRLDAETKISPDLESAFFSVKGAEKEGALLHILQDVIK 330

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
             T                +K    +   + + T  + IIF   K +V  L   L + G+
Sbjct: 331 MPTGTPEGFKEDKDEGSKKRKRGPDRPNAKEKPTEHSTIIFTATKFHVEYLTSILVQAGY 390

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           +V   +G +DQ +R   + +F+ G   ++V +D+AARG+DIP + +V N+D  ++ + ++
Sbjct: 391 AVSHAYGALDQTARKIQVEDFRRGKTNILVVTDVAARGIDIPVLANVINYDFCDQPKVFV 450

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           HR+GRT RAG+ G +++LV+  D  ++  ++  + +++
Sbjct: 451 HRVGRTARAGQKGWSYSLVSDIDAPYLLDLQLFLGRRL 488


>gi|21910935|ref|NP_665203.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS315]
 gi|28895375|ref|NP_801725.1| ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
 gi|21905142|gb|AAM80006.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28810621|dbj|BAC63558.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
          Length = 447

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 118/366 (32%), Positives = 182/366 (49%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      V  A+ + G+V PT +Q + IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDYHFKQYVQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNK 117
             L++ +A V++    I  P+RELA Q+ D  ++  K+    + L              K
Sbjct: 61  EKLDEAKAEVQVV---ITAPSRELATQIFDACKQIAKHSQEEIRLANYVGGTDKLRQIEK 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++     V+DEAD  +DMGF+  +  I +  P +
Sbjct: 118 LKGSQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASFPKS 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVIEQIKTKTVIADTI---DNWLVSTKGRDKNGQLL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         ++F N K+   +L   L   G  V  IHG I  R R +I++  K+   +
Sbjct: 235 EILKTMQPYMAMLFVNTKERADDLHAFLTANGLKVAKIHGGISPRERKRIMNQVKKLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 KELEKM 360


>gi|88797378|ref|ZP_01112968.1| Superfamily II DNA and RNA helicase [Reinekea sp. MED297]
 gi|88780247|gb|EAR11432.1| Superfamily II DNA and RNA helicase [Reinekea sp. MED297]
          Length = 462

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 136/359 (37%), Positives = 199/359 (55%), Gaps = 7/359 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+DL L P ++  +    Y   T IQ KT+PLVL   DV   A+TG+GKTA+F L +L  
Sbjct: 5   FSDLPLKPALLTNLNTLNYTAMTEIQQKTLPLVLDGQDVIAQAKTGSGKTAAFGLGVLQA 64

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLER 121
           L+  R R++   +LIL PTRELA QVA    K  +  +    L +  G+PF  Q   L  
Sbjct: 65  LQVERFRIQ---SLILCPTRELADQVAQELRKLARAIHNIKILTLCGGMPFGPQIGSLAH 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGRI +H  +G L +++++ LV DEADRMLDMGF   I  I   VP  RQTL
Sbjct: 122 GAHIIVGTPGRIEEHLRKGTLKLDDVQTLVFDEADRMLDMGFQEVIDTIVDQVPAQRQTL 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT  DE+  +     +    ++V +        +  +             + Q L  
Sbjct: 182 LFSATYPDEIDSLCARVTRKATLVQVESAHQADVIEQRFYRTESF---DDRLQMSQRLLL 238

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
            D   N +IFCN K+    +   L++ GF   A+HG+++QR R + L  F  G++ ++VA
Sbjct: 239 NDKPMNTLIFCNTKRETDEVADFLKQAGFDALALHGDMEQRQRNETLIRFANGSVSVLVA 298

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +D+AARGLDI  +  V NF +    E + HRIGRTGRAG  G+A++  A+++   +  +
Sbjct: 299 TDVAARGLDIDKLDAVINFHIAKDPEVHTHRIGRTGRAGERGRAYSFFAEKEGHKLLRM 357


>gi|152013495|sp|A4R8G3|DBP8_MAGO7 RecName: Full=ATP-dependent RNA helicase DBP8
          Length = 567

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 114/428 (26%), Positives = 199/428 (46%), Gaps = 20/428 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LG+ P +V ++ +    +PT IQ   I  +L+  D  G ++TG+GKT +F +P+L 
Sbjct: 137 TFESLGVEPWLVQSLANLAVKRPTGIQKGCIGEILKGRDCIGGSRTGSGKTIAFAVPILQ 196

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +  + +      +L  TR+LA Q+ + F+     + L  AL+IGG    +Q   L +
Sbjct: 197 KYAQDPSAIFAV---VLTATRQLALQIYEQFKAVSSPHVLKAALIIGGSDMRSQAIALAQ 253

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILV----------IDEADRMLDMGFIPYIQNIT 171
              ++I TPGR+ DH              V          +  +     M          
Sbjct: 254 RPSIVIATPGRLADHIRSSGEDTICGLRRVKFLVLDEADRLLSSKGPGSMLPHIDECMAV 313

Query: 172 SLVPFTRQTLLFSATMTDELQ----KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
              P  RQTLLF+AT+T E++      +    +     EV+T                  
Sbjct: 314 LPPPEDRQTLLFTATVTPEVRALKEMPTRPGKEPVHVCEVDTQVLAIPDSLKQSYIQLTV 373

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             ++  L + LL + +T ++ IIF N+      L H L      V ++H  + Q+ R+  
Sbjct: 374 THREHFLHEFLLTAANTERSIIIFVNRTSTAQFLHHLLRLLDHRVTSLHSKLRQQQRIDN 433

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L  F+    +++VA+D+A+RGLDIP+V  V N+D+P   ++YIHR+GRT RAGR G+A  
Sbjct: 434 LGRFRASAARILVATDVASRGLDIPEVSVVVNYDLPRDPDDYIHRVGRTARAGRKGEAVN 493

Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN---NPIPQKST 404
            V + D++ + AIEK + + ++    +  +L   + +  +   +  ++    N    +  
Sbjct: 494 FVGQRDVELVLAIEKRVGRPMEKWEEEGVNLETRVIRDSLKLVSEKKREALLNIEENREV 553

Query: 405 GFDRRKKN 412
           G  R+++ 
Sbjct: 554 GGRRKRQK 561


>gi|297191502|ref|ZP_06908900.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197722058|gb|EDY65966.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 502

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 116/358 (32%), Positives = 178/358 (49%), Gaps = 5/358 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +  +++ A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L ML  
Sbjct: 75  FADLDMPEQLLAALAAQGVTVPFPIQGATLPNTLAGRDVLGRGRTGSGKTLAFGLAMLAG 134

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R+P  L+L PTRELA QV D    Y ++  L +A ++GG+    Q   L  G
Sbjct: 135 TAGKRAEPRLPLALVLVPTRELAQQVTDALTPYARSLKLRLATVVGGMSIGRQAGALRSG 194

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D   RG   ++ + + V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 195 AEVVVATPGRLKDLIQRGDCRLDQVAVTVLDEADQMADMGFMPQVTALLDQVRPDGQRML 254

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+             +  +  +           +  
Sbjct: 255 FSATLDRNVDLLVRRYLNDPVVHSVDP-----SAGAVTTMEHHVLHVDSADKHATTTEIA 309

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F + K  V  L   L   G     +HG   Q  R + L+ FK G + ++VA+
Sbjct: 310 ARDGRVIMFLDTKHAVDRLTKDLLNSGVRAAGLHGGKSQPQRNRTLTQFKSGHVTVLVAT 369

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV     + +  +
Sbjct: 370 NVAARGIHVDNLDLVVNVDPPTDPKDYLHRGGRTARAGESGSVVTLVTPNQRRDMARL 427


>gi|149236686|ref|XP_001524220.1| hypothetical protein LELG_04190 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152013482|sp|A5E3K3|DBP4_LODEL RecName: Full=ATP-dependent RNA helicase DBP4
 gi|146451755|gb|EDK46011.1| hypothetical protein LELG_04190 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 775

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 120/454 (26%), Positives = 205/454 (45%), Gaps = 25/454 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F+DL ++   +  + +  +V  T IQ K+IP+ L+  D+ G A+TG+GKT +F++P +  
Sbjct: 50  FSDLPITQNTLRGLKECSFVSLTDIQKKSIPVALKGEDLMGTARTGSGKTLAFLIPVIEI 109

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +L            LI+ PTRELA Q+ +   K GK  + +  L+ GG   + + +++ R
Sbjct: 110 LLRNDITEYDGLAALIVSPTRELAVQIFEVLAKIGKYNSFSAGLVTGGKDVQYEKERISR 169

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++               +  +N+++LV+DEADR LDMGF   I NI + +P TRQTL
Sbjct: 170 MNILVGTPGRISQHLNESVGMETSNLQVLVLDEADRCLDMGFRKQIDNILNHLPRTRQTL 229

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT TD +Q ++   L NPKRI  ++    +   E            +   +      
Sbjct: 230 LFSATHTDSVQDLARLSLTNPKRIGTSSDQDISAIPESLDQYYVKVPLNEKLDVLWSFIK 289

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  ++F +  K V     +       +    ++G   Q SR++    F +     +
Sbjct: 290 SHLKSKILVFFSSSKQVQYAYETFRTLQPGIPLMKLYGRHKQTSRLETTVKFSQAQHACL 349

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+ ARGLD P +  V   D P     Y+HR+GR+ R GR GK+  ++   +   +  
Sbjct: 350 FATDIVARGLDFPAIDWVIQVDCPEDVATYVHRVGRSARFGRQGKSLLMLLPTEEDGM-- 407

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
              L   KV  +   + ++              ++K+     +S  F         Q++ 
Sbjct: 408 ---LKRMKVHKIEPKMMNI-----------KEKSKKSIRPQLQSLCFKDPVIKNLGQRAF 453

Query: 420 IP------LKESEKISKLQQDIQENDADSLGFRG 447
           I       +++ + I K+ +   E  A SLG  G
Sbjct: 454 IAYFRSVYIQKDKDIFKVDELPVEEYAASLGLPG 487


>gi|145294934|ref|YP_001137755.1| hypothetical protein cgR_0880 [Corynebacterium glutamicum R]
 gi|140844854|dbj|BAF53853.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 424

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 147/402 (36%), Positives = 218/402 (54%), Gaps = 4/402 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +LG++ ++  A+   G  +   IQ  T+P+ L  HD  G A+TG GKT  F +P+L 
Sbjct: 9   TFTELGVAVEITDALEALGINRTFAIQEYTLPIALDGHDFIGQARTGMGKTYGFGVPLLD 68

Query: 62  ILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
            +            PR L++ PTRELA QV D+ ++   N  L +    GG P+E Q   
Sbjct: 69  RVFDSADVAETDGTPRALVIVPTRELAVQVGDDLQRAATNLPLKIFTFYGGTPYEEQIDA 128

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+ G DV++ TPGR+LD   RG L ++ + ILV+DEAD MLD+GF+P I+ I   +    
Sbjct: 129 LKVGVDVVVGTPGRLLDLHKRGALSLDKVAILVLDEADEMLDLGFLPDIEKILRALTHQH 188

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSATM   +  ++ +FL  P  I   T  ++A       V   A    K A+  ++
Sbjct: 189 QTMLFSATMPGAILTLARSFLNKPVHIRAETSDASATHKTTKQVVFQAHKMDKEAITAKI 248

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           LQ++D     IIF   K+    +   L  +GFSV ++HG++ Q +R K L+ F+ G I +
Sbjct: 249 LQAKDRG-KTIIFARTKRTAAQVAEDLASRGFSVGSVHGDMGQPAREKSLNAFRTGKIDI 307

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+D+ DV HV N+  P+    Y+HRIGRTGRAG +G A TLV  ++     
Sbjct: 308 LVATDVAARGIDVDDVTHVINYQTPDDPMTYVHRIGRTGRAGHNGTAVTLVGYDETLKWT 367

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400
            I+  +E          S+    LE +DI +    R   P  
Sbjct: 368 VIDNELELGQPNPPQWFSTSPELLEALDIPEGVTERVGPPTK 409


>gi|328868773|gb|EGG17151.1| hypothetical protein DFA_08133 [Dictyostelium fasciculatum]
          Length = 640

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 125/387 (32%), Positives = 205/387 (52%), Gaps = 9/387 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F D     ++  ++L+  + KP+ IQ    P  L   D+ GI+QTG+GKT SF +P ++
Sbjct: 190 EFDDSPFPAQI-KSILNTNFEKPSVIQTIGWPSSLAGRDLLGISQTGSGKTLSFGIPAIM 248

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            IL + + +   P+ L++ PTREL+ Q+A     Y K   L  A L GG P   Q +++ 
Sbjct: 249 HILAQKQVKYFGPQVLVVAPTRELSVQIAQEMAPYLKACGLKFATLYGGDPKIKQIEQMR 308

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
                ++ TPGRILD  N G L +     +V+DEADRML+MGF   I+ I S V    Q 
Sbjct: 309 YKPQFVVGTPGRILDLANDGYLSLKRTSYVVLDEADRMLEMGFEDQIRQIFSNVRPDHQL 368

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTAETIEHCFVATYAQYSKKCALLQ 236
           L ++AT   +++ ++  F++ P R++V     + +               + SK   +L+
Sbjct: 369 LYWTATWPKKVEALANEFIKTPIRVQVGNGELSANPNITQNFTICETEADKTSKLIDVLE 428

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +   + T K  I    +        +        + +IHG+  Q  R+ I++ FK   +
Sbjct: 429 GIFTERPTAKVLIFTMTKGGADKLADYIRSNGNARIDSIHGDKQQSRRIAIINAFKRDQL 488

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK---ED 353
            ++VA+D+A+RGLDI  +  V NF +PN++E+Y+HRIGRT RAG  G + +L++K    D
Sbjct: 489 DILVATDVASRGLDIRTITDVINFSMPNQSESYVHRIGRTARAGASGYSHSLISKTSSND 548

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNP 380
           I+ I  +  L+E+    +  DL +L P
Sbjct: 549 IELIPDVIDLLERANQPIPEDLKALAP 575


>gi|330007678|ref|ZP_08306017.1| ATP-dependent RNA helicase SrmB [Klebsiella sp. MS 92-3]
 gi|328535359|gb|EGF61841.1| ATP-dependent RNA helicase SrmB [Klebsiella sp. MS 92-3]
          Length = 421

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 135/401 (33%), Positives = 205/401 (51%), Gaps = 6/401 (1%)

Query: 17  LDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILEKGRARVRMPRT 75
            D G+ +PT IQ   IP  L   D+ G A TGTGKTA+++LP +  +L+  R +   PR 
Sbjct: 20  QDKGFTRPTAIQAAAIPPALDGRDILGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRI 79

Query: 76  LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135
           LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +      D+++ T GR+L 
Sbjct: 80  LILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQ 139

Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT-MTDELQKV 194
           +          +E L++DEADRMLDMGF   I+ I     + +QT+LFSAT   D ++  
Sbjct: 140 YIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQTMLFSATLEGDAIKDF 199

Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
           +E  L+ P  +  N  +   + I   +        K        L  Q      I+F  +
Sbjct: 200 AERLLEEPVEVSANPSTRERKKIHQWYYRADDIEHKTKL--LVNLLQQPEATRAIVFVRK 257

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           ++ V  L + L + G + C + G + Q  R + +    +G + +++A+D+AARG+DIPDV
Sbjct: 258 RERVHELANWLREAGINTCWLEGEMVQAKRNEAIKRLTDGRVNVLIATDVAARGIDIPDV 317

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374
            HVFNFD+P  A+ Y+HRIGRTGRAG+ G A +LV   D   +  I + IE+ +     D
Sbjct: 318 SHVFNFDMPRTADTYLHRIGRTGRAGKKGTAISLVEAHDHLLLGKIGRYIEEPLKARVID 377

Query: 375 L--SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
               +   P EK+               +K      R K  
Sbjct: 378 ELRPTTRAPSEKLTGKPSKKVLAKRAQKKKDEKEKPRVKKR 418


>gi|290959211|ref|YP_003490393.1| ATP-dependent RNA helicase [Streptomyces scabiei 87.22]
 gi|260648737|emb|CBG71850.1| putative ATP-dependent RNA helicase [Streptomyces scabiei 87.22]
          Length = 765

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 140/442 (31%), Positives = 210/442 (47%), Gaps = 20/442 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP+L
Sbjct: 35  VTFATLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLL 94

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  G    + PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LE
Sbjct: 95  AQLAGGHTERKKPRGVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALE 154

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+ D  NRG   + N +I V+DEAD+M D+GF+P +  +   VP   Q 
Sbjct: 155 RGVDILVATPGRLRDIINRGACSLENTQIAVLDEADQMSDLGFLPEVTELLDQVPAGGQR 214

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM +E+  + + +L NP   EV++      T+ H  +       K          
Sbjct: 215 MLFSATMENEISTLVKRYLSNPVTHEVDSAQGNVTTMSHHILIV-----KPKDKAPVTAA 269

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   +     +   L   G    A+HG + Q +R + L++FK+G +  +V
Sbjct: 270 IASRKGRTIIFVRTQLGADRIAEQLRDSGVKADALHGGMTQGARTRTLADFKDGYVNALV 329

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ +  +  V N D     ++Y+HR GRT RAGR G   +L      + I  +
Sbjct: 330 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSLSLPHQRRQIFRL 389

Query: 361 EK---------------LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            +                 + +V  + G  S      E +D A     R+   + ++   
Sbjct: 390 MEDAGVDASRHIIQGGTAFDTEVADITGARSMTEVQAESVDNAAQQAEREVAQLTKELER 449

Query: 406 FDRRKKNYSSQKSHIPLKESEK 427
             RR      + + +  + + +
Sbjct: 450 VTRRAAELRDEATRLTARAARE 471


>gi|115456345|ref|NP_001051773.1| Os03g0827700 [Oryza sativa Japonica Group]
 gi|113550244|dbj|BAF13687.1| Os03g0827700 [Oryza sativa Japonica Group]
          Length = 723

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 122/373 (32%), Positives = 197/373 (52%), Gaps = 8/373 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE- 64
           LGL  ++V  +   G     PIQ   +   L   D+   A+TGTGKT +F +PM+  L  
Sbjct: 74  LGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLME 133

Query: 65  ----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               +   R R+PR L+L PTRELA QV    ++       +   + GG+ +  Q   L 
Sbjct: 134 EDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKL--STVCVYGGVSYNVQQNALS 191

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGRI+D  N G L +  ++ LV+DEAD+ML +GF   ++ I   +P  RQ+
Sbjct: 192 RGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAERQS 251

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++K+S  +L NP  I++               A     + K  +L  L+ 
Sbjct: 252 MLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLIT 311

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K++             +  A+HG+I Q  R + L+ F++G   ++V
Sbjct: 312 VYAKGGKTIVFTKTKRDADE-VSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLV 370

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP+V  + ++++PN  E ++HR GRTGRAG+ G A  +      + + ++
Sbjct: 371 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSL 430

Query: 361 EKLIEKKVDWLNG 373
           E+ +  + D+++ 
Sbjct: 431 ERDVGCRFDFISP 443


>gi|143455890|sp|Q0DM51|RH3_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
           Flags: Precursor
 gi|18855061|gb|AAL79753.1|AC096687_17 putative RNA helicase [Oryza sativa Japonica Group]
          Length = 758

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 122/373 (32%), Positives = 197/373 (52%), Gaps = 8/373 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE- 64
           LGL  ++V  +   G     PIQ   +   L   D+   A+TGTGKT +F +PM+  L  
Sbjct: 109 LGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLME 168

Query: 65  ----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               +   R R+PR L+L PTRELA QV    ++       +   + GG+ +  Q   L 
Sbjct: 169 EDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKL--STVCVYGGVSYNVQQNALS 226

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGRI+D  N G L +  ++ LV+DEAD+ML +GF   ++ I   +P  RQ+
Sbjct: 227 RGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAERQS 286

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++K+S  +L NP  I++               A     + K  +L  L+ 
Sbjct: 287 MLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLIT 346

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K++             +  A+HG+I Q  R + L+ F++G   ++V
Sbjct: 347 VYAKGGKTIVFTKTKRDADE-VSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLV 405

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP+V  + ++++PN  E ++HR GRTGRAG+ G A  +      + + ++
Sbjct: 406 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSL 465

Query: 361 EKLIEKKVDWLNG 373
           E+ +  + D+++ 
Sbjct: 466 ERDVGCRFDFISP 478


>gi|313242299|emb|CBY34458.1| unnamed protein product [Oikopleura dioica]
          Length = 777

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 109/389 (28%), Positives = 184/389 (47%), Gaps = 18/389 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+D+ L P+++  +    Y KPTPIQ   + ++    D+   AQTG+GKTA+ ++P++ 
Sbjct: 350 TFSDMKLCPEIMENLQRMKYTKPTPIQQYAVSILGSGSDLMATAQTGSGKTAAMMIPIIN 409

Query: 62  ILEK------GRARVRMPRTLILEPTRELAAQVAD-NFEKYGKNYNLTVALLIGGIPFEA 114
            L+       G    +    +++ PTRELA Q+ D  ++  G+N N+   L  GG     
Sbjct: 410 YLKMSNIGSRGYNACQKVDCIVVAPTRELATQLYDECYKFCGRNTNVVPGLCYGGTGTRE 469

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           Q++++  G +++I TPGR+ D   +G +  +  + LV+DEADRMLD GF P I+ I + +
Sbjct: 470 QSQRIREGCNIVIGTPGRLKDFLEKGVIDASEAQFLVLDEADRMLDQGFGPDIREINAYL 529

Query: 175 PFTRQTLL----FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
           P           FSAT    +Q  ++++L+             A T          +  K
Sbjct: 530 PPKDTGKRTTALFSATFETAIQSAAQDYLRPNYIFVAIGIIGGANTAVTQQFEQLQKREK 589

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
               ++  +  Q+  K  +IF   K    +L   L   G     IHG+  QR R + +++
Sbjct: 590 FNRTVE--ICKQNQGKRTLIFVATKIFADSLGSMLVGDGIKATTIHGDRQQRDREQAIND 647

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV- 349
            +  +   +       +         V NFD P   E+YIHRIGRT R G+ G A T + 
Sbjct: 648 PQGESYARLGRHRRCRKRYRY----LVINFDFPKELESYIHRIGRTARKGKKGLAITFID 703

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           A +D +H  ++ K+ +     +   L  +
Sbjct: 704 AMKDRQHASSLVKICQDAKQTVPPFLQQM 732


>gi|156103037|ref|XP_001617211.1| DEAD/DEAH box helicase [Plasmodium vivax SaI-1]
 gi|148806085|gb|EDL47484.1| DEAD/DEAH box helicase, putative [Plasmodium vivax]
          Length = 923

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 120/406 (29%), Positives = 190/406 (46%), Gaps = 41/406 (10%)

Query: 2   DFAD--LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           +F D  L L   ++  +    Y K TPIQ  ++ +++ ++D+ G+AQTG+GKTA ++LP+
Sbjct: 339 NFDDVGLNLHEILLSNIKKVNYDKTTPIQKYSLSIIMNKNDLIGVAQTGSGKTAGYLLPI 398

Query: 60  LTIL------------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL 101
           +  +                       RV +P  LIL PTRELA Q+  + +K+     +
Sbjct: 399 INHMLLNDPPKHTFYEENQKSSSYYYNRVCLPICLILAPTRELAVQIFYDSKKFCFETGI 458

Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
              +L GG   + Q   L++GAD+++ TPGR+ D   +GK+ +     LV+DEADRMLDM
Sbjct: 459 KPVVLYGGSNIKTQLSNLDKGADIIVATPGRLNDILEKGKIRLFLTSFLVLDEADRMLDM 518

Query: 162 GFIPYIQNITSLVPF--------TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
           GF P I++I                   +     T+++ K          R E+   +  
Sbjct: 519 GFSPQIRSIMYDYDMPGNENDSRMNPNKMEYKRYTNDVVKRQTIMFSATFRKEIQVLAKE 578

Query: 214 AETIE-------------HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVN 260
                             +          +        L S++     IIF   K+    
Sbjct: 579 YLFNYTFLLVGKVGSTNEYIKQNLIYIEEENKCNYLLKLLSENNNGLTIIFVETKRKADI 638

Query: 261 LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNF 320
           +   L  Q  +   IHG+  Q  R + L  FK G   ++VA+D+AARGLDI ++ HV NF
Sbjct: 639 IERFLNNQKLNAVCIHGDKSQDERERALKLFKRGIKNMLVATDVAARGLDISNIKHVINF 698

Query: 321 DVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           D+P+  ++YIHRIGRTGRAG  G A + V  ++      +   +E+
Sbjct: 699 DLPSNIDDYIHRIGRTGRAGNIGIATSFVNDDNRNIFKDLLATLEE 744


>gi|225558604|gb|EEH06888.1| ATP-dependent RNA helicase DBP10 [Ajellomyces capsulatus G186AR]
          Length = 940

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 127/401 (31%), Positives = 205/401 (51%), Gaps = 36/401 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL+  ++ A+   G+  PTPIQ KTIPLVL   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 90  FQSLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEK 149

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q + +   
Sbjct: 150 LKSHSAKFGS-RALILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMASN 208

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 209 PDIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFATQLTEILHGLPSSRQTLL 268

Query: 183 FSATMTDELQKVSE-----------------------------------NFLQNPKRIEV 207
           FSAT+   L + +                                      L     +  
Sbjct: 269 FSATLPKSLVEFARAGLQEPILIRLDAESKISPDLQNAFFTVKSSEKEGALLHVLHEVIK 328

Query: 208 NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
                T           +++  K+  +     +   T  + IIF   K +V  L   L  
Sbjct: 329 IPTGETEAHKRAKEEVKHSKKRKRSEVTSNSHKESPTEYSTIIFTATKHHVDYLTSILRT 388

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            GF+V   +G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D P++ +
Sbjct: 389 SGFAVSYAYGSLDQTARKIEVQNFRAGITHILVVTDVAARGIDIPILSNVINYDFPSQPK 448

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            ++HR+GRT RAG+ G +++L+ + D  ++  ++  + + +
Sbjct: 449 IFVHRVGRTARAGKTGWSYSLIRESDTPYLLDLQLFLGRPL 489


>gi|224126463|ref|XP_002319844.1| predicted protein [Populus trichocarpa]
 gi|222858220|gb|EEE95767.1| predicted protein [Populus trichocarpa]
          Length = 766

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 106/381 (27%), Positives = 170/381 (44%), Gaps = 4/381 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +L LS +    +  A + K T IQ  ++P  L   D+ G A+TG+GKT +F++P+L  
Sbjct: 70  FKELPLSKRTQDGLKRANFSKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFIIPILEK 129

Query: 63  LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L K R         +I+ PTRELA Q+ D  +  GK +N +  LLIGG       K+   
Sbjct: 130 LYKERWGSEDGVGGIIISPTRELAGQLFDVLKTVGKFHNFSAGLLIGGRKEVEMEKEHVN 189

Query: 122 GADVLICTPGRILDHFNRGKLLMN-NIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              +L+CTPGR+L H +         +++LV+DEADR+LD+GF   +  I + +P  RQT
Sbjct: 190 ALSILVCTPGRLLQHMDETPNFDCSQLQVLVLDEADRILDVGFKKTLNAIVAQLPKHRQT 249

Query: 181 LLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           LLFSAT T  +Q     +              +   +             K   L   + 
Sbjct: 250 LLFSATQTKSIQDLARLSLKDPEYISVHEDAETATPSRLQQTAMIVPLEQKLDMLWSFVK 309

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              ++     +   ++   V       + G  +  +HG + Q  RM I S F E    L 
Sbjct: 310 AHLNSKILVFLSSCKQVKFVFEAFKKLRPGIPLKCLHGRMKQEKRMGIYSQFCESHSVLF 369

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
                +        V  V   D P+   +YIHR+GRT R    G++   +   ++K ++ 
Sbjct: 370 STDVASRGLDFNKAVDWVVQVDCPDDVASYIHRVGRTARYLAGGRSVLFLMPSEMKMLEK 429

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           ++   +  V ++  +   L P
Sbjct: 430 LQTA-KIPVQFIKANTKRLQP 449


>gi|50914756|ref|YP_060728.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
 gi|50903830|gb|AAT87545.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
          Length = 447

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 118/366 (32%), Positives = 183/366 (50%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      V  A+ + G+V PT +Q + IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDYHFKQYVQQALEEIGFVNPTEVQQRLIPIVNSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNK 117
             L++ +A V++    I  P+RELA Q+ D  ++  K+    + L              K
Sbjct: 61  EKLDEAKAEVQVV---ITAPSRELATQIFDACKQIAKHSQEEIRLANYVGGTDKLRQIEK 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++     V+DEAD  +DMGF+  +  I + +P +
Sbjct: 118 LKGSQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASLPKS 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVIEQIKTKTVIADTI---DNWLVSTKGRDKNGQLL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         ++F N K+   +L   L   G  V  IHG I  R R +I++  K+   +
Sbjct: 235 EILKTMQPYMAMLFVNTKERADDLHAFLTANGLKVAKIHGGIPPRERKRIMNQVKKLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 KELEKM 360


>gi|288921374|ref|ZP_06415654.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
 gi|288347226|gb|EFC81523.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
          Length = 569

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 123/389 (31%), Positives = 201/389 (51%), Gaps = 12/389 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA++G+ P+ V A+ + G V+P  IQ  T+PL L R D+ G A+TGTGKT +F +P++ +
Sbjct: 2   FAEIGVRPETVAALAEVGIVRPFAIQELTLPLALARTDIIGQARTGTGKTLAFGIPVVQV 61

Query: 63  LEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           ++         P+ L++ PTREL  QV  +  + G    L V  + GG  +E Q   L  
Sbjct: 62  VQAQDEGADGHPQALVVVPTRELCVQVTADIARAGLGRGLRVLSVYGGRAYEPQLSALRS 121

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++ TPGR+LD   +  L +  +  LV+DEAD MLD+GF+P ++ I + +P  R T+
Sbjct: 122 GVDIVVGTPGRLLDLARQKALDLARVRTLVLDEADEMLDLGFLPDVERIIAFLPEQRHTM 181

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM   +  ++  F  +              T+ +     +  ++     +   +  
Sbjct: 182 LFSATMPGPVIGLARRF-MSRPVHVRAEQPDEGRTVPNTQQHVFRAHALDKMEVLARVLQ 240

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F   ++    +   L ++GF+  A+HG++ Q  R + L  F+ G + ++VA
Sbjct: 241 ATDRGLAMVFVRTRRTADKVADDLARRGFAAAAVHGDLGQGQREQALRAFRGGKVDVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+D+  V HV N+  P     Y+HRIGRTGRAG  G A T V  +D+     + 
Sbjct: 301 TDVAARGIDVGGVTHVVNYQCPEDENVYLHRIGRTGRAGGSGVAITFVDWDDLPRWTLVN 360

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390
           K +    +           PLE    + H
Sbjct: 361 KALALPFEE----------PLETYSTSPH 379


>gi|297204692|ref|ZP_06922089.1| DEAD-box RNA helicase [Streptomyces sviceus ATCC 29083]
 gi|297148758|gb|EDY54797.2| DEAD-box RNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 486

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 120/358 (33%), Positives = 182/358 (50%), Gaps = 5/358 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +   ++ A+   G   P PIQ  T+P  L   D  G  +TG+GKT +F L +L  
Sbjct: 60  FADLDMPEPLLAALTAQGVSVPFPIQSATLPNTLAGRDALGRGRTGSGKTLAFGLALLAR 119

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y ++  L +A ++GG+    Q   L  G
Sbjct: 120 TAGQRAEPRQPLALVLVPTRELAQQVTDALTPYARSVQLRLATVVGGMSIGRQANALRSG 179

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D  +RG+  +N + I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 180 AEVVVATPGRLKDLIDRGECRLNQVAITVLDEADQMADMGFMPQVTALLDQVRPEGQRML 239

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++   +L +P    V+  +    T+EH  +  +                 
Sbjct: 240 FSATLDRNVDRLVRRYLTDPVVHSVDPSAGAVSTMEHHVLHVHGADKHWTTTQIA----- 294

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F + K  V  L   L   G    A+HG   Q  R + L+ FK G + ++VA+
Sbjct: 295 AREGRVIMFLDTKHAVDRLTQDLLNSGVRAAALHGGKSQPQRTRTLTQFKTGHVTVLVAT 354

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV     + +  +
Sbjct: 355 NVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRDMTRL 412


>gi|149246473|ref|XP_001527693.1| hypothetical protein LELG_00213 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152013477|sp|A5DS77|DBP2_LODEL RecName: Full=ATP-dependent RNA helicase DBP2
 gi|146447647|gb|EDK42035.1| hypothetical protein LELG_00213 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 552

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 126/381 (33%), Positives = 201/381 (52%), Gaps = 3/381 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F + G    V+  + + G+ KPT IQ +  P+ L   D+ GIA TG+GKT S+ LP + 
Sbjct: 117 SFDEAGFPDYVLNELKNQGFPKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIV 176

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       R   P  L+L PTRELA Q+     K+G +  +    + GG P   Q + L
Sbjct: 177 HINAQPLLKRGDGPIVLVLAPTRELACQIQTECSKFGASSRIRNTCVYGGAPKGPQIRDL 236

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G ++ I TPGR++D    GK  +  +  LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 237 ANGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 296

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL++SAT   E+Q ++ ++L NP ++ + +    A       V    +Y K+  L++ L 
Sbjct: 297 TLMWSATWPKEVQNLARDYLDNPIQVTIGSLELAASHTITQIVQVVTEYQKRDLLVKHLE 356

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +     + ++     K   +   S     G+   AIHG+ +Q  R  +L  F++G+  +
Sbjct: 357 SALADSNSKVLVFASTKRTCDEVTSYLRADGWPALAIHGDKEQHERDWVLKEFRQGSHSI 416

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           MVA+D+AARG+D+  + HV N+D+P   E+Y+HRIGRTGR G  G A +     + K   
Sbjct: 417 MVATDVAARGIDVKGITHVVNYDMPGNIEDYVHRIGRTGRGGATGTAISFFTDNEKKLGG 476

Query: 359 AIEKLIEKKVDWLNGDLSSLN 379
            + K++ +    +  +L + +
Sbjct: 477 DLCKIMREAKQTIPPELQAYD 497


>gi|332025702|gb|EGI65860.1| ATP-dependent RNA helicase DDX42 [Acromyrmex echinatior]
          Length = 752

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 140/453 (30%), Positives = 223/453 (49%), Gaps = 19/453 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
            F   G    ++ A+                   L   D+ GIA+TG+GKTA+F+ PM  
Sbjct: 255 SFGHFGFDDALIKAIRKN----------------LSGRDIIGIAKTGSGKTAAFIWPMLV 298

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + ++       P  LIL PTREL+ Q+    +K+GK YN+ V    GG     Q+K L
Sbjct: 299 HIMDQRELKAGDGPIGLILAPTRELSQQIYQEAKKFGKVYNIQVCCCYGGGSKWEQSKAL 358

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA++++ TPGR++D        +  +  LV+DEADRM DMGF P +++I + V   RQ
Sbjct: 359 ESGAEIVVATPGRMIDLVKMKATNLTRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQ 418

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT   +++K++ + L +P RI           +    +  +   S K   L Q  
Sbjct: 419 TLLFSATFKKKVEKLARDVLTDPIRIVQGDVGEANTDVTQHVIMFHNNPSGKWNWLLQNY 478

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               +  + +IF  +K N   L ++L+ + F V  +HG++DQ  R K+++ FK+  +  +
Sbjct: 479 IEFLSAGSLLIFVTKKLNAEELANNLKLKEFEVLLLHGDMDQIERNKVITAFKKKEVSTL 538

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDIP +  V N+DV    + + HRIGRTGRAG  G A+TLV ++D +    
Sbjct: 539 VATDVAARGLDIPHIKTVVNYDVARDIDTHTHRIGRTGRAGEKGTAYTLVTEKDKEFAGH 598

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           + + +E     +   L  L         ++     K   +     G   R +  SS    
Sbjct: 599 LVRNLEGANQEVPKSLIDLAMQSSWFRKSRFKGG-KGKSLNVGGAGLGFRGRPNSSNSGG 657

Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAF 452
              + S+ IS++ + ++ +   S        AF
Sbjct: 658 STSQASKDISEVVKKLERHGPGSDRLSAMKAAF 690


>gi|297271814|ref|XP_001110023.2| PREDICTED: sentrin-specific protease 3-like isoform 3 [Macaca
           mulatta]
          Length = 971

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 201/378 (53%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 598 SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 657

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E     ++  + L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 658 QIEL---DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 714

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q 
Sbjct: 715 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 774

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L      
Sbjct: 775 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL--Y 832

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 833 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 892

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V +ED + +  I
Sbjct: 893 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 952

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      ++ +  +++ L
Sbjct: 953 ETFYNTSIEEMPLNVADL 970


>gi|42781255|ref|NP_978502.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987]
 gi|42737177|gb|AAS41110.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           ATCC 10987]
          Length = 389

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 99/348 (28%), Positives = 178/348 (51%), Gaps = 8/348 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69
           P    A   AG+ + T IQ + IP +L+  DV   + TGTGKT +++LP+L  +      
Sbjct: 7   PFXQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI---NPE 63

Query: 70  VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129
           V+ P+ ++L PTREL  Q+ +  +K+     ++ A LIGG   + Q +KL++   V++ +
Sbjct: 64  VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLKKHPRVIVGS 123

Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189
           PGRIL+     KL M+ ++ +V DE D+++    +  +Q++       RQ + FSATMT 
Sbjct: 124 PGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQLVFFSATMTK 183

Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249
             +  + +    P+ + V    S +         TY    ++                 +
Sbjct: 184 AAEDAARDLAVEPQLVRVTRAESKSLVE-----HTYIICERREKNDYVRRIMHMGDVKAV 238

Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309
            F N    +  +   L+ +     A+H    ++ R   +  F+ G +++++A+D+AARG+
Sbjct: 239 AFLNDPFRLDEITEKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGI 298

Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           DI D+ HV + ++P+  + YIHR GRTGR G+ G   +LV  ++ + +
Sbjct: 299 DIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTPQEERKL 346


>gi|296821328|ref|XP_002850084.1| ATP-dependent RNA helicase DBP5 [Arthroderma otae CBS 113480]
 gi|238837638|gb|EEQ27300.1| ATP-dependent RNA helicase DBP5 [Arthroderma otae CBS 113480]
          Length = 481

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 97/399 (24%), Positives = 194/399 (48%), Gaps = 19/399 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +LGL   V+  + +  + +P+ IQ + +PL++     ++ G +Q+GTGKTA+FVL +
Sbjct: 81  SFEELGLDEAVLRGLREMRFSRPSKIQERALPLLMANPPQNMIGQSQSGTGKTAAFVLNV 140

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ L+     + +P+ LIL P+RELA Q+    +  G    +    +   +P E+   + 
Sbjct: 141 LSRLDVSPGMINVPQALILAPSRELARQIVGVIQVMG--SFIEGLKIATLVPMESNRNQP 198

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              + V+            R     +   +++ +  + +   G       + S +P T Q
Sbjct: 199 VEASLVVGTPGTVQDFIRKRLFNTQHVKVLVLDEADNMLDQQGLGDQCIRMKSSLPKTTQ 258

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT  D + + +  F  N  ++ +     T E I+  ++   +   K   L++   
Sbjct: 259 IVLFSATFPDSVVRYAHKFAPNANQLTLKHEELTVEGIKQLYLDCDSTEHKYEILVK--F 316

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+ + IIF   + +   +   +  +G +V ++ G +D + R +++ +F++GT +++
Sbjct: 317 YGLLTIGSSIIFVKTRASAAEIERRMIDEGHTVVSLTGGVDGQKRDEVIDSFRKGTAKVL 376

Query: 300 VASDLAARGLDIPDVGHVFNFDVPN-----------RAENYIHRIGRTGRAGRHGKAFTL 348
           + +++ ARG+D+  V  V N+D+P              + Y+HRIGRTGR GR G A + 
Sbjct: 377 ITTNVLARGIDVQTVSMVINYDIPELHAPDAGERVADPQTYLHRIGRTGRFGRVGVAVSF 436

Query: 349 VA-KEDIKHIDAIEKLIEKKVDWLNG-DLSSLNPPLEKI 385
           V+ KE+   +  I+K     +  ++  D   +   ++K+
Sbjct: 437 VSNKEEWTMLMDIQKYFGTDIMRVDSRDWDEVEDVVKKV 475


>gi|269102593|ref|ZP_06155290.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268162491|gb|EEZ40987.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 402

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 144/408 (35%), Positives = 219/408 (53%), Gaps = 24/408 (5%)

Query: 27  IQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE----------------KGRARV 70
           +Q + IPL L   DV   AQTGTGKTA+F LPML  L                 + R + 
Sbjct: 1   MQEQAIPLALTGVDVMAGAQTGTGKTAAFALPMLHRLMSYPAASELHADEAEQTEQRKQP 60

Query: 71  RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130
            + R L+L PTRELA QV DN   Y K+ +L V +  GG     Q K L++GAD++I TP
Sbjct: 61  ALIRGLVLTPTRELAQQVYDNVMTYCKHTDLKVVVAYGGTSMNVQVKALQQGADIVIATP 120

Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190
           GR++DH + G L +  +E  V+DEADRMLDMGFI  I+ I   +   RQTL FSAT + +
Sbjct: 121 GRLIDHMHVGTLSLKYLECFVLDEADRMLDMGFIIDIKRIMKRMAAERQTLFFSATFSKQ 180

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGII 250
           ++K++ + +  PK +EV   ++ AET++           ++              +  ++
Sbjct: 181 VKKLAFDIMTEPKMVEVTPANTAAETVQQMVYPVDKHRKRELLSYL---IGSRNWQQVLV 237

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F   K+    L   L   G    +I+G+  Q +R + L +FK G ++ +VA+D+AARG+D
Sbjct: 238 FTKTKQGSDELVKELGLDGIKAASINGDKSQGARQRALDDFKSGKVRALVATDVAARGID 297

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV-- 368
           I  + +V NFD+P + E+Y+HRIGRTGRAG  G A TL++ ++   +  IE+L++ ++  
Sbjct: 298 IEQLEYVVNFDMPFKPEDYVHRIGRTGRAGSAGHAITLMSLDEEWILKGIEELLDTRLPQ 357

Query: 369 DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            WL G       PL  ++      + +      K+     R KN   +
Sbjct: 358 QWLEGFEPD---PLATVETTMPKRSAEKRRAKAKAKIHQNRGKNNRRR 402


>gi|123500450|ref|XP_001327863.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121910798|gb|EAY15640.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 478

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 119/381 (31%), Positives = 193/381 (50%), Gaps = 9/381 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL--QRHDVCGIAQTGTGKTASFVLPM 59
           DF  + L P ++  V   G+  P+ IQ   I  +       V   AQ+GTGKT +F + +
Sbjct: 92  DFDQMDLPPALLQGVYSYGFRAPSEIQAIAIGAIRDPSNRHVIAQAQSGTGKTGAFSIGV 151

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG--IPFEAQNK 117
           L+ ++  +   +  + L+L PTRELA Q+ + F++ G         +  G          
Sbjct: 152 LSKIDVSQ---KTTQALVLAPTRELATQIFNVFKEIGSRIPGLDIAIFIGGAQRVVDAQA 208

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +      + ICTPGR LD    G L + N ++ V+DEAD+ML   FI  + +I    P  
Sbjct: 209 RAASHPHICICTPGRALDLIVSGHLRVQNFKMAVLDEADQMLSDNFIEQVNDIMEYFPED 268

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q LLFSAT++  +  +   F+ +P RI +     T E I+  +V      +K       
Sbjct: 269 VQILLFSATISQSIFHIMNTFMNDPFRILIKKEQLTLEGIKQFYVDVQETSNKFDC--LL 326

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +    +++  IIF N K  V  +   L++ GF V  IH  +DQ  R +I+ +F+ GT +
Sbjct: 327 DIYGSVSIQKAIIFANSKNAVDYISEQLQQHGFGVAPIHAGLDQLERDRIMRDFRTGTAR 386

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++++DL ARG+D+  V  V NF++P + E YIHRIGR+GR GR G A  +   ED+  I
Sbjct: 387 VLISTDLLARGIDVQQVTLVINFELPKKLEQYIHRIGRSGRYGRKGVAINICDHEDMNVI 446

Query: 358 DAIEKLIEKKVDWLNGDLSSL 378
           + ++      ++ L  D+  +
Sbjct: 447 EMLKNHYMTTINELPSDIERV 467


>gi|199598083|ref|ZP_03211506.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|258507759|ref|YP_003170510.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
 gi|199591009|gb|EDY99092.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|257147686|emb|CAR86659.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
 gi|259649106|dbj|BAI41268.1| ATP-dependent DNA and RNA helicase [Lactobacillus rhamnosus GG]
          Length = 448

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 130/449 (28%), Positives = 211/449 (46%), Gaps = 17/449 (3%)

Query: 1   MD--FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           MD  F    L P V+  +   G  +PTPIQ K IP +L+  ++ G +QTG+GKT +F++P
Sbjct: 1   MDNQFKQYQLKPFVIAGLDAMGITQPTPIQKKVIPALLRGENLVGQSQTGSGKTHAFLVP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEK--YGKNYNLTVALLIGGIPFEAQN 116
           +L++++      ++    I  P+RELA Q+    ++    +       L+ G    +  +
Sbjct: 61  LLSLVDPNEDATQVV---ITAPSRELANQIYAVAQQLTQTEPAIRISRLVGGMDKQKQID 117

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K       V I TPGRILD   R  L+  ++   V+DEAD  LDMGF+  +  I S  P 
Sbjct: 118 KLQAHQPHVAIGTPGRILDMIKRYDLVPASVRHFVVDEADMTLDMGFLETVDAIASSFPE 177

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q  +FSAT+  +L+     ++ +P  IE+   S  A+T+E+  +A   +   +     
Sbjct: 178 HLQMAVFSATIPQKLEPFLRKYMDHPTVIELKPQSVIADTVENILIAVKGRDKNELIYQL 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               +       +IF N K +V  +   L+ QG  V  IHG I  R R +I+    +   
Sbjct: 238 ---VTMGHPFLVLIFANTKTSVDAIHDYLKHQGLKVAKIHGGIQPRERRRIMKEVADLKY 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VA+DLAARG+DI  V  V N ++P   E +IHR+GRTGR G  G A TL        
Sbjct: 295 QYVVATDLAARGIDIKGVSMVINAEIPRDQEFFIHRVGRTGRNGLPGTAITLYEPGQEDQ 354

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           I  +E  +  K          L    ++    Q    +++  +  +      ++K+  + 
Sbjct: 355 IAELEH-MGIKFKPKTIQKGELVDTYDRNRRVQRKPKQEDTSLAIRGLVKKAKQKHMPNY 413

Query: 417 KSHI------PLKESEKISKLQQDIQEND 439
           +  I        K + K+++ Q  + E  
Sbjct: 414 RKKIRTAVLLERKRNAKVARRQALLAEKR 442


>gi|254569806|ref|XP_002492013.1| RNA helicase in the DEAD-box family, involved in RNA isomerization
           at the 5' splice site [Pichia pastoris GS115]
 gi|238031810|emb|CAY69733.1| RNA helicase in the DEAD-box family, involved in RNA isomerization
           at the 5' splice site [Pichia pastoris GS115]
 gi|328351494|emb|CCA37893.1| ATP-dependent RNA helicase DDX23/PRP28 [Pichia pastoris CBS 7435]
          Length = 555

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 121/384 (31%), Positives = 196/384 (51%), Gaps = 13/384 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           + +  +  +++  V   G+ +PTPIQ  +IPL L   D+ GIA+TG+GKT ++++P L  
Sbjct: 158 WGESNIKKEILDIVHSLGFDEPTPIQRASIPLALASRDLIGIAKTGSGKTLAYIIPALNY 217

Query: 63  LEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L +        ++P+ LIL PTRELA QV   F+K+    +L +  LIGG   E     +
Sbjct: 218 LLQLPHLESGDQIPQVLILVPTRELALQVEKEFKKFTVKLDLNIISLIGGHSIEENVNSI 277

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY--------IQNIT 171
            RG ++++ TPGR+LD + R  + +     +V+DEADRM+DMGF             +  
Sbjct: 278 SRGCEIVVATPGRLLDCYERKMISLAECYYVVLDEADRMIDMGFEVQVLKILKLLPTDQN 337

Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
                 R T +F+ATM+  +QK+++N+L  P  + V    +  +T+         + +K 
Sbjct: 338 RFTSRPRNTFMFTATMSTAIQKITKNYLNQPGTLTVGELGTVVDTVTQEVRYFPNENAKL 397

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
             L   L   +  +   + +    + + N          +V     N DQR     + N 
Sbjct: 398 NHLFSILPSFRPPIIIFVNYKKTCEFLQNQLSKNTALSSTVIHGSKNQDQREL--AIQNL 455

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351
           + G I +++A+DLA RG+DIP+V  V NF + N  ++Y HRIGRTGRAG  G + T +  
Sbjct: 456 RSGKIDVLIATDLAGRGIDIPNVSLVVNFQMANGLDSYTHRIGRTGRAGNRGYSITYLGP 515

Query: 352 EDIKHIDAIEKLIEKKVDWLNGDL 375
           ED +      KL+ K    +  +L
Sbjct: 516 EDSEIFSEFRKLLVKSGSKIPAEL 539


>gi|255072889|ref|XP_002500119.1| predicted protein [Micromonas sp. RCC299]
 gi|226515381|gb|ACO61377.1| predicted protein [Micromonas sp. RCC299]
          Length = 489

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 94/387 (24%), Positives = 179/387 (46%), Gaps = 19/387 (4%)

Query: 2   DFADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQ--RHDVCGIAQTGTGKTASFVLP 58
            F +LGLS +++  +  +  + +P+ IQ +T+P++LQ    ++   A  G+GKT  F L 
Sbjct: 85  SFEELGLSAELLQGLYSEMKFERPSKIQGETLPMILQPPHRNLIAQAHNGSGKTTCFTLG 144

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           ML+ ++        P+ L + PTRELA Q     EK GK   +T+A         A  ++
Sbjct: 145 MLSRVDVSN---PAPQALCICPTRELAIQNVMVMEKMGKYAKITIAYTADARWVGASRRE 201

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI----PYIQNITSLV 174
                 V+      +     +         ++  +    M   G        ++++ S  
Sbjct: 202 KIVDQVVIGTPGKMLGWMREKQLDCKGVKILVFDEADQMMDTDGHRVDSLKIMKHLKSST 261

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
               Q LLFSAT  + ++  S   + N  +I +     + + I+   V   +  +K+  L
Sbjct: 262 KQMPQVLLFSATFNERVKDFSTKVVPNANQIFLPAHELSLDVIKQHRVYVNSTEAKEILL 321

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            +++    D +   IIF   ++    L  ++ + G+   AI G ++   R +++  F++G
Sbjct: 322 KEKIFPCCDKIGQTIIFVRTREGCKRLMRTMNEAGYKCTAIEGGMEHSERDRVVKEFRDG 381

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVP--------NRAENYIHRIGRTGRAGRHGKAF 346
             ++++++D+ +RGLD+  V  V N+D+P           E Y+HRIGR+GR G+ G AF
Sbjct: 382 LTKILISTDVLSRGLDVSTVTLVINYDMPVEHSNPRAPNYETYLHRIGRSGRFGKKGAAF 441

Query: 347 -TLVAKEDIKHIDAIEKLIEKKVDWLN 372
             L+  ++   +D I +  +  V  + 
Sbjct: 442 NLLLGPDERAVMDKIAEHFDHPVPEVE 468


>gi|28901554|ref|NP_801209.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260363105|ref|ZP_05775974.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260880390|ref|ZP_05892745.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260894758|ref|ZP_05903254.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|260900107|ref|ZP_05908502.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|28810101|dbj|BAC63042.1| ATP-dependent RNA helicase, DEAD box family [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308089408|gb|EFO39103.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308092166|gb|EFO41861.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308109992|gb|EFO47532.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|308111933|gb|EFO49473.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
          Length = 412

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 141/424 (33%), Positives = 218/424 (51%), Gaps = 12/424 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS +++ A+    + KPT IQ   IP +L   D+  +A TG+GKT ++ LP+L
Sbjct: 1   MPFSTLSLSSELIHALPK-DFKKPTDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  +    IL PTRELA QV++   + G+  +L    L GG+  E Q + L 
Sbjct: 60  EKLRVNPEQKAL----ILVPTRELAMQVSEAINQVGQALDLNTVCLCGGVDKEQQQQALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ T GR++D  N G  L   +  LV+DEADR+LDMGF P +QNI       RQT
Sbjct: 116 TNPHILVATTGRLVDLANNGLDLSK-VHYLVLDEADRLLDMGFWPDVQNIAMQTSNQRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT +DEL+   +  +Q PK++  +  +ST + I             K  +      
Sbjct: 175 AMFSATFSDELKGKVKLLMQAPKQVAAHQENSTNQDIVETLYLVNKGSKTKALIEL---I 231

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q++    ++F   K+N   L   L K G S  A+HG+  Q  R + L+ FK G IQ+++
Sbjct: 232 KQNSWTQVLVFIGAKENADGLAKKLNKAGISTNALHGDKSQAEREEALAQFKSGQIQVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG  G A +LV   ++  ++AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVAMSLVCHGEMDALNAI 351

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
             L ++ +     DL    P  +K    +   A ++    +++      K+     K   
Sbjct: 352 RHLTQRALPV--QDLVGF-PVTDKPSTGESKRAPRDKKANRRTNAKKSIKQFQGKSKRPA 408

Query: 421 PLKE 424
           P  +
Sbjct: 409 PSAK 412


>gi|320036334|gb|EFW18273.1| ATP-dependent RNA helicase DBP10 [Coccidioides posadasii str.
           Silveira]
          Length = 927

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 130/404 (32%), Positives = 210/404 (51%), Gaps = 39/404 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPLVL   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 83  FQAMGLNANLLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEK 142

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +V   R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 143 LKSHSTKVGS-RGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMAGN 201

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 202 PDIIIATPGRFLHLKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPQSRQTLL 261

Query: 183 FSATMTDELQKVSE--------------------------------------NFLQNPKR 204
           FSAT+   L + +                                       + L +  +
Sbjct: 262 FSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQSVFFTVKSAEKEGALLHILHDVIK 321

Query: 205 IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHS 264
           +      +     E       ++  K+        Q   T  + IIF   K +V  +   
Sbjct: 322 VPTGETEAGKRAKELAISGKSSKKRKRSEQNNPNPQESPTEHSTIIFVATKHHVDYVASL 381

Query: 265 LEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPN 324
           L + GF+V   +G++DQ +R   +SNF+ G   ++V +D+AARG+DIP + +V N+D P+
Sbjct: 382 LRESGFAVSYAYGSLDQTARKIQVSNFRTGISNILVVTDVAARGIDIPILENVINYDFPS 441

Query: 325 RAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           +A+ ++HR+GRT RAGR G +++LV   D  ++  ++  + +++
Sbjct: 442 QAKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRRL 485


>gi|303313411|ref|XP_003066717.1| ATP-dependent RNA helicase DBP10, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240106379|gb|EER24572.1| ATP-dependent RNA helicase DBP10, putative [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 936

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 130/404 (32%), Positives = 210/404 (51%), Gaps = 39/404 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPLVL   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 92  FQAMGLNANLLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEK 151

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +V   R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 152 LKSHSTKVGS-RGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMAGN 210

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 211 PDIIIATPGRFLHLKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPQSRQTLL 270

Query: 183 FSATMTDELQKVSE--------------------------------------NFLQNPKR 204
           FSAT+   L + +                                       + L +  +
Sbjct: 271 FSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQSVFFTVKSAEKEGALLHILHDVIK 330

Query: 205 IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHS 264
           +      +     E       ++  K+        Q   T  + IIF   K +V  +   
Sbjct: 331 VPTGETEAGKRAKELAISGKSSKKRKRSEQNNPNPQESPTEHSTIIFVATKHHVDYVASL 390

Query: 265 LEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPN 324
           L + GF+V   +G++DQ +R   +SNF+ G   ++V +D+AARG+DIP + +V N+D P+
Sbjct: 391 LRESGFAVSYAYGSLDQTARKIQVSNFRTGISNILVVTDVAARGIDIPILENVINYDFPS 450

Query: 325 RAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           +A+ ++HR+GRT RAGR G +++LV   D  ++  ++  + +++
Sbjct: 451 QAKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRRL 494


>gi|221061229|ref|XP_002262184.1| rna helicase [Plasmodium knowlesi strain H]
 gi|193811334|emb|CAQ42062.1| rna helicase, putative [Plasmodium knowlesi strain H]
          Length = 908

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 128/445 (28%), Positives = 201/445 (45%), Gaps = 43/445 (9%)

Query: 2   DFAD--LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           +F D  L L   ++  +    Y K TPIQ  ++ +++ ++D+ G+AQTG+GKTA ++LP+
Sbjct: 331 NFDDVGLNLHEILLANIKRVNYDKTTPIQKYSLSIIMNKNDLIGVAQTGSGKTAGYLLPI 390

Query: 60  LTIL------------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL 101
           +  +                       RV +P  LIL PTRELA Q+  + +K+     +
Sbjct: 391 INHMLLNDPPKHTFYEENQRSSSYYYNRVCLPVCLILAPTRELAVQIFYDSKKFCFETGI 450

Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161
              +L GG   + Q   L++GAD+++ TPGR+ D   +GK+ +     LV+DEADRMLDM
Sbjct: 451 KPVVLYGGSNIKMQLSNLDKGADIIVATPGRLNDILEKGKIKLFLTSFLVLDEADRMLDM 510

Query: 162 GFIPYIQNITSLVPF--------TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
           GF P I++I                   +     T+E+ K          R E+   +  
Sbjct: 511 GFSPQIRSIMYDYDMPGNDNESRMNPNKMEYKRYTNEIVKRQTIMFSATFRKEIQVLAKE 570

Query: 214 AETIE-------------HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVN 260
                             +          +        L S++     IIF   K+    
Sbjct: 571 YLYNYTFLLIGKVGSTNEYIKQNLIYIEEENKCNYLLKLLSENNNGLTIIFVETKRKADI 630

Query: 261 LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNF 320
           L   L  Q  +   IHG+  Q  R + L  FK G   ++VA+D+AARGLDI ++ HV NF
Sbjct: 631 LERFLNNQKLNAVCIHGDKSQDERERALKLFKRGIKNMLVATDVAARGLDISNIKHVINF 690

Query: 321 DVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNP 380
           D+P+  ++YIHRIGRTGRAG  G A + V  ++      +   +E+    +      LN 
Sbjct: 691 DLPSNIDDYIHRIGRTGRAGNIGIATSFVNDDNRNIFKDLLATLEECNQAIPPWF--LNL 748

Query: 381 PLEKIDIAQHNHARKNNPIPQKSTG 405
            +     A+ N   + N   +   G
Sbjct: 749 VMRYTASAKSNRTFRYNKPMKGGRG 773


>gi|195132627|ref|XP_002010744.1| GI21709 [Drosophila mojavensis]
 gi|193907532|gb|EDW06399.1| GI21709 [Drosophila mojavensis]
          Length = 804

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 112/399 (28%), Positives = 182/399 (45%), Gaps = 14/399 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            FA   LS K   A+ +A Y  PT +Q  +I   LQ  DV G A TG+GKT +F++P + 
Sbjct: 68  TFAQFPLSQKTQKALSEAKYTTPTEVQRLSIGHALQGKDVLGAAITGSGKTLAFLIPVLE 127

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +     +R      +I+ PTRELA Q+ +  +K GK ++ +  L+IGG   + +  +++
Sbjct: 128 HLYMNKWSRTDGVGAIIISPTRELAYQIFETLKKIGKYHDFSAGLIIGGKNLKFERTRMD 187

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      +             +E+LV+DEADR LDMGF   + +I    P  RQT
Sbjct: 188 QCNILICTPGRLLQHMDENPLFNATTMEVLVLDEADRCLDMGFQKTLNSIIENFPPDRQT 247

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC----------FVATYAQYSK 230
           LLFSAT T+ ++ ++   L+NP  +   T  S                    +      +
Sbjct: 248 LLFSATQTNTVEDLARLNLKNPVYVGYGTAKSVDTKPSGSTAVLALPELLQQSYVVLPLE 307

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC--AIHGNIDQRSRMKIL 288
           +   +          +  I+F    K    L     K    V   A++G + Q  R+ I 
Sbjct: 308 EKITMLWSFIKNHLKQKIIVFVASCKQAKYLYEIFCKLRPGVGLLALYGTLHQDRRIAIY 367

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
            +F   +  +M A+D+A+RGLD P V  V   D P     YIHR GR+ R    G+   +
Sbjct: 368 EDFLRKSHVVMFATDVASRGLDFPSVNWVLQLDCPEDVPQYIHRAGRSARNKSRGECLLV 427

Query: 349 VAK-EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
           +   E+   I A+++ +   +  ++ D   L  P  KI+
Sbjct: 428 LTPSEEEYMIGALKEQLNLDIRAVHIDPKKLFSPRVKIE 466


>gi|256789946|ref|ZP_05528377.1| DEAD-box RNA-helicase [Streptomyces lividans TK24]
 gi|289773828|ref|ZP_06533206.1| DEAD-box RNA-helicase [Streptomyces lividans TK24]
 gi|289704027|gb|EFD71456.1| DEAD-box RNA-helicase [Streptomyces lividans TK24]
          Length = 439

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 122/359 (33%), Positives = 188/359 (52%), Gaps = 5/359 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL P +V  +   G  +P PIQ  T+P  L   DV G A+TG+GKT +F L +L 
Sbjct: 8   SFDGLGLPPVLVETMTSLGVTRPFPIQAATLPEALAGRDVLGRARTGSGKTLAFGLALLA 67

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                RA  + P  L+L  TRELA QV+D    Y +   + +  ++GG+    Q + L  
Sbjct: 68  GTAGRRAEPKRPLALVLVSTRELAQQVSDALAPYARALGVRLTTVVGGLSINRQTQALRD 127

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+V++ TPGR+ D  +R    +N + I V+DEAD+M D+GF+P +  I   VP   Q L
Sbjct: 128 GAEVVVATPGRLTDLVSRRDCHLNQVRITVLDEADQMCDLGFLPQVSGILDQVPSDGQRL 187

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+  ++ ++  + L  P  + V+  S++  T+EH  +  +              + 
Sbjct: 188 LFSATLDGDVDQLVRDHLHAPVPVSVDPASASVSTMEHHVLTVHPADK-----YATATEI 242

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F + K  V      L   G S  A+H    Q  R   L+ F EG + ++VA
Sbjct: 243 AARDGRVLMFLDTKAGVDRFTRELRAAGVSAGALHSGKSQPQRTHTLARFVEGGVTVLVA 302

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +++AARG+ + D+  V N D P  A++Y+HR GRT RAGR G   TLV  +  + ++ +
Sbjct: 303 TNVAARGIHVDDLDLVVNVDPPADAKDYLHRGGRTARAGRAGSVVTLVTPDQRREVNRM 361


>gi|17509811|ref|NP_490989.1| hypothetical protein Y23H5B.6 [Caenorhabditis elegans]
 gi|7331768|gb|AAF60456.1| Hypothetical protein Y23H5B.6 [Caenorhabditis elegans]
          Length = 732

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 114/461 (24%), Positives = 210/461 (45%), Gaps = 20/461 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  LS + +  + D  Y KPT IQ  TI   L   DV G A+TG+GKT + V+P+L
Sbjct: 76  LRFEDFPLSWRTLEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVL 135

Query: 61  TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L + +         LI+ PTRELA Q        G ++  +  L+IGG     +  ++
Sbjct: 136 EALWRAKWSPDYGLGALIISPTRELALQTFSTINAVGAHHGFSCGLVIGGSDVAFERNRI 195

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++      +       ++  +++++LV+DEADRMLDMGF   + +I + +P  RQ
Sbjct: 196 SGINIIVCTPGRLLQHMDENAQMSCDSLQVLVLDEADRMLDMGFSKQLNSIINNLPAERQ 255

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT T  ++ +      +P  + V+  +++A T ++   +      +         
Sbjct: 256 TLLFSATQTRNVKDLCRVCTNDPVFVSVHE-NASAATPDNLKQSYVIVEEEHKINALWSF 314

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF--SVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                 K  ++F +  K    L  +  +      V  + G ++Q+ R++  + F E    
Sbjct: 315 IEAHRKKKSLVFVSSCKQARFLTEAFSQLRPGLPVMGLWGTMNQKKRIETFTKFDESKAA 374

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++A+D+A+RGLD   +  V   D P + ++YIHR+GR+ R    G +  +V+       
Sbjct: 375 VLIATDVASRGLDFEHIDWVIQVDCPAQIDDYIHRVGRSARMDDSGNSLLMVSPS----- 429

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
                    + + + G L   + P+E++ I  H  A  +  +  ++   + ++    +QK
Sbjct: 430 ---------QEEAMIGKLEKHSIPIEELKI--HPDAMSDVRVKLRAILAESQELKEYAQK 478

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458
           S +    S    K ++       D+     +     +P+ R
Sbjct: 479 SIVAYLRSIYTMKDKKVFDVEAIDAAALADSFGLVSVPRVR 519


>gi|293395719|ref|ZP_06640001.1| ATP-independent RNA helicase DbpA [Serratia odorifera DSM 4582]
 gi|291421656|gb|EFE94903.1| ATP-independent RNA helicase DbpA [Serratia odorifera DSM 4582]
          Length = 445

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 119/359 (33%), Positives = 195/359 (54%), Gaps = 8/359 (2%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM 72
           +  + + GY + TP+Q   +P +L   DV   A+TG+GKTA+F + +L  +   +   + 
Sbjct: 1   MANLNELGYAEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLDKINVSQVATQA 60

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLERGADVLICTPG 131
              LIL PTRELA QV+    +  +       L + G  P  AQ   L     +++ TPG
Sbjct: 61  ---LILCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGAQLDSLVHAPHIVVGTPG 117

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           RI +H  +  L+++ +++LV+DEADRMLDMGF   I  + S  P  RQTLLFSAT    +
Sbjct: 118 RIQEHLRKKTLVLDEVKVLVLDEADRMLDMGFADDIDQVISYTPPQRQTLLFSATYPAGI 177

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
           ++         +R  ++      +         Y     +   L           + ++F
Sbjct: 178 ER----ISDRVQRAPLSVEVDDGDAPTTIAQRFYETTRDQRPALLVAAIRHFQPTSCVVF 233

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           CN K++  ++  +LE +G SV A+HG+++QR R ++L  F   + +++VA+D+AARGLDI
Sbjct: 234 CNTKRDCQSVFEALEARGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDI 293

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
            D+  V N+++    E ++HRIGRTGRAG  G A +L A +++    A+E+ ++ K+ W
Sbjct: 294 KDLELVVNYELSFDPEVHVHRIGRTGRAGMSGLAISLCAPQEMTRAHALEEYLDCKLQW 352


>gi|258573243|ref|XP_002540803.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237901069|gb|EEP75470.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 937

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 126/404 (31%), Positives = 212/404 (52%), Gaps = 39/404 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ ++   G+  PTPIQ KTIPLVL   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 92  FQAMGLNATLLKSITRKGFSVPTPIQRKTIPLVLDEQDVVGMARTGSGKTAAFVIPMIEK 151

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   +++   R LI+ P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 152 LKSHSSKIGS-RALIMSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMAGN 210

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 211 PDIIIATPGRFLHLKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPQSRQTLL 270

Query: 183 FSATMTDELQKVSE--------------------------------------NFLQNPKR 204
           FSAT+   L + +                                       + L N  +
Sbjct: 271 FSATLPKSLVEFARAGLQDPTLVRLDTESKISPDLQNAFFTVKSAEKEGALLHILHNVIK 330

Query: 205 IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHS 264
           +      +     E      +++  K+        Q   T  + I+F   K +V  +   
Sbjct: 331 VPTGETEAGIRAKEQSSSGKHSKKRKRSEQNNPSPQESPTEHSTIVFVATKHHVDYIASI 390

Query: 265 LEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPN 324
           L + GF+V   +G++DQ +R   ++NF+ G   ++V +D+AARG+DIP + +V N+D P+
Sbjct: 391 LRESGFAVAYAYGSLDQTARKIQVNNFRAGISNILVVTDVAARGIDIPVLANVINYDFPS 450

Query: 325 RAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           +A+ ++HR+GRT RAGR G +++LV   D  ++  ++  + +++
Sbjct: 451 QAKIFVHRVGRTARAGRKGWSYSLVRDSDAPYLLDLQLFLGRRL 494


>gi|330846291|ref|XP_003294974.1| hypothetical protein DICPUDRAFT_85413 [Dictyostelium purpureum]
 gi|325074446|gb|EGC28501.1| hypothetical protein DICPUDRAFT_85413 [Dictyostelium purpureum]
          Length = 445

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 101/394 (25%), Positives = 190/394 (48%), Gaps = 18/394 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60
            F +LGL P+++  V   GY KP+ IQ   +P+++Q  +++   +Q+GTGKTA+F L ML
Sbjct: 51  SFNELGLKPELLKGVYAMGYNKPSKIQEAALPIIVQSPNNLIAQSQSGTGKTAAFTLGML 110

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     +  P+ + + PT+ELA Q  D   K G+  ++   L +  +   A  K   
Sbjct: 111 NCVDPA---IDAPQAICISPTKELAQQTFDVISKIGQFSDIKPLLYVPELDLPAVVKNQ- 166

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPG+IL H    KL + +++++V+DEAD ++ M  +P        +   +  
Sbjct: 167 ----VIIGTPGKILTHILNRKLSIKHLKMVVMDEADFIVSMENVPTQIQQIHRLLPKQIK 222

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +   +    +  +     +     +++    S                      +   L 
Sbjct: 223 ICLFSATFSQGVENLIKNVVPEPNVDIRLKKSDLGLQRIHQYFIDCGSESNKPFILSDLY 282

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH-GNIDQRSRMKILSNFKEGTIQLM 299
              ++   I+F +  +    L   +++ G SV  ++  ++   +R + L NF+EG  +++
Sbjct: 283 GFISIGQSIVFVHTIQTAKTLYEKMKEDGHSVSILYGKDLSTEARFEHLKNFREGKSKVL 342

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           +++++ ARG+DIP V  V N+D+P          +Y+HRIGR GR GR G A T V  + 
Sbjct: 343 ISTNVLARGIDIPQVSLVVNYDIPLDENARPDPVHYLHRIGRVGRFGRSGVAITFVHDQS 402

Query: 354 IK-HIDAIEKLIEKKVDWLNG-DLSSLNPPLEKI 385
            K  ++ I + +   ++ +N  +L  L+  L+ I
Sbjct: 403 SKTKLNNIIEHLGHHIEEINASELEQLDGILKGI 436


>gi|84999856|ref|XP_954649.1| DEAD box RNA helicase [Theileria annulata]
 gi|65305647|emb|CAI73972.1| DEAD box RNA helicase, putative [Theileria annulata]
          Length = 501

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 95/402 (23%), Positives = 170/402 (42%), Gaps = 30/402 (7%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59
           M +  L LSP ++  + + GY +P+ IQ   +PL+L    ++   ++ G+GKTA+F L M
Sbjct: 99  MQWTHLPLSPDLLKGIHNMGYARPSKIQQCALPLILGSCTNIIAQSKNGSGKTATFALAM 158

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ +      V+      + PTRELA Q     +K G+   +   L +   P    N K 
Sbjct: 159 LSKVNLNVPLVQALC---ICPTRELATQNVQVIQKLGQFTQIKCFLGVPQCPRYDDNDKY 215

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V                +    + +L   +          P +  I +      Q
Sbjct: 216 HLY--VGTPGKTMDFLKKRIMNVTSVVMLVLDEADELINQQNNMGPQVLQIRNFFRGPVQ 273

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT +D +   +         I+V     T + I+  ++    +  K   L +  +
Sbjct: 274 IVLFSATFSDSVHNFATKIAPRAHVIQVKREQLTLDCIDQRYMICNDEEDKFNKLSE--I 331

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH---------GNIDQRSRMKILSN 290
            S   +   +IF N ++    L   +  QG +V  +           ++    R +I+  
Sbjct: 332 YSSMIVGQSVIFVNSRETAFKLSQRMRDQGHAVSLLCGTLGPSSGPNSMTPEIRDRIMKE 391

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNR-------------AENYIHRIGRTG 337
           FK+G  ++++ +D+ ARG+D+P V  V N+++P                E Y+HRIGRTG
Sbjct: 392 FKDGETKVLICTDVLARGIDVPQVTLVINYELPMSYSGTKTAEAKSMCMETYLHRIGRTG 451

Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           R G  G +  ++   ++  I++I++  +  VD L  D   L 
Sbjct: 452 RFGVKGMSINMITVNEMALIESIKQYYKCNVDLLECDPEELE 493


>gi|313247629|emb|CBY15795.1| unnamed protein product [Oikopleura dioica]
          Length = 595

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 117/382 (30%), Positives = 194/382 (50%), Gaps = 5/382 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--M 59
            F +      ++  +    + +PT IQ    P+ L   ++ GI++TG+GKT +F+LP  +
Sbjct: 107 KFEECNFPSYILKCIQKCKFTEPTAIQSIGFPIGLSGLNMVGISRTGSGKTLAFLLPSML 166

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               ++   R   P  ++L PTRELA QV    + + ++ ++    + GG P   Q + L
Sbjct: 167 HIRAQEPIRRGDGPIAVVLLPTRELAQQVEQVSKDFVESSDIYTTCVFGGAPKGPQIRDL 226

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E+G +++I TPGR+LD    GK  +     LV+DEADRMLDMGF P I+ I   +   RQ
Sbjct: 227 EKGCEIVIATPGRLLDFLEAGKTNLKRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQ 286

Query: 180 TLLFSATMTDELQKVSENF--LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            L++SAT   E+Q ++++F           +T  S  + I             +  +   
Sbjct: 287 LLMYSATWLKEVQALADDFLGDNYIHATIGSTKLSCNKRILQIVDICDQYEKDEKLMKLI 346

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++     I+F   K+    L + +++  +   AIHG+  Q  R  +L  F+ G I 
Sbjct: 347 SHLMEERESKTIVFTETKRRADELTYKMKRLRWEAAAIHGDKSQSERDHVLKRFRSGRIP 406

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
           +++A+D+A+RGLDI DV  V NFD P + E+Y+HRIGRT R     G ++T   + D KH
Sbjct: 407 ILIATDVASRGLDINDVKFVVNFDFPGQIEDYVHRIGRTARGKDAKGTSYTFFTQGDGKH 466

Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378
              +  L++     +   L+ +
Sbjct: 467 AAGLVTLLKDADQRIPEKLTQM 488


>gi|262282195|ref|ZP_06059964.1| ATP-dependent RNA helicase [Streptococcus sp. 2_1_36FAA]
 gi|262262649|gb|EEY81346.1| ATP-dependent RNA helicase [Streptococcus sp. 2_1_36FAA]
          Length = 447

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 196/452 (43%), Gaps = 43/452 (9%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +      +  A+ D  +V+ T +Q K IP+VL   D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MKFTEFTFKNYIQEALEDLKFVEATEVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL- 119
             L +    V++    I  P+RELA Q+     +     +  + +       +   +   
Sbjct: 61  QKLNEDEDHVQVV---ITAPSRELATQIYQATRQIASFSDKEIRVANYVGGTDKNRQIDK 117

Query: 120 --ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++  +  V+DEAD  LDMGF+  +  I S +P  
Sbjct: 118 LEFSQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIASSLPKD 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  ++TI        +   +       
Sbjct: 178 LQFLVFSATIPQKLQPFLKKYLSNPVMEQIKTKTVISDTI---ENWLVSTKGRDKNAQIY 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         +IF N K     L   L  QG  V  IHG+I  R R +I++  K    +
Sbjct: 235 EISRILQPYLAMIFVNTKTRADELHSYLLAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A  L    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAIALYQPSDDSDI 354

Query: 358 DAIEKLIEKKVDWL--NGDLSSL---------NPPLEKIDI------------------- 387
             +EKL  K +  +  NG+                 EK+D                    
Sbjct: 355 RELEKLGIKFIPKMIKNGEFQDTYDRDRRANREKSYEKLDTEMIGLVKKKKKKIKPGYKK 414

Query: 388 ----AQHNHARKNNPIPQKSTGFDRRKKNYSS 415
               A +   RK      ++ G   RK    S
Sbjct: 415 KIQWAVNEKRRKTKRAENRARGRAERKAKRQS 446


>gi|254565085|ref|XP_002489653.1| Component of the TREX complex required for nuclear mRNA export
           [Pichia pastoris GS115]
 gi|238029449|emb|CAY67372.1| Component of the TREX complex required for nuclear mRNA export
           [Pichia pastoris GS115]
 gi|328350072|emb|CCA36472.1| ATP-dependent RNA helicase UAP56/SUB2 [Pichia pastoris CBS 7435]
          Length = 436

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 97/375 (25%), Positives = 171/375 (45%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P++  A+ D G+  P+ +Q   IP  +  +DV   A++G GKTA FVL  L  
Sbjct: 53  FQDFLLRPELTRAIRDCGFEHPSEVQQVCIPQSILGNDVLCQAKSGLGKTAVFVLSTLQQ 112

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L+     V +       E   ++  + A   +   +               E   K  + 
Sbjct: 113 LDPSPGEVSVLVICNTRELAYQIKNEYARFSKYMPEVKTEVFYGGTQIAKDEEILKNKDT 172

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM-GFIPYIQNITSLVPFTRQT 180
              +++ TPGR+        + + N++  VIDE D++L+       +Q+I    PF +Q 
Sbjct: 173 CPHIVVATPGRLNALVRDKVMNVKNVKNFVIDECDKVLENLSMRRDVQSIFRETPFQKQV 232

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ E++K+ + F+QNP  I V+  +         +     +  K   L +    
Sbjct: 233 MMFSATLSTEMRKICKKFMQNPLEIYVDNEAKLTLHGLQQYYIKLTEADKNRKLSEL--L 290

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF    K    L   L +  F   +IH  + Q+ R++   +FKE   ++ V
Sbjct: 291 DSLDFNQVIIFVKSVKRAEYLNRLLNENNFPSISIHSGLPQQERIERYKSFKEFNKRICV 350

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           A+D+  RG+D+  +    N+D+PN +  Y+HR+GR GR G  G A + + + ED   ++ 
Sbjct: 351 ATDVLGRGIDVERINLAINYDLPNESAQYLHRVGRAGRFGTKGLAISFISSDEDNTILEQ 410

Query: 360 IEKLIEKKVDWLNGD 374
           I+   + K+     +
Sbjct: 411 IQDRFDVKIAEFPAE 425


>gi|119471856|ref|XP_001258230.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
 gi|134034063|sp|A1DNG2|DBP10_NEOFI RecName: Full=ATP-dependent RNA helicase dbp10
 gi|119406382|gb|EAW16333.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
          Length = 934

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 124/407 (30%), Positives = 200/407 (49%), Gaps = 42/407 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  ++ A+   G+  PTPIQ KTIP+++   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 92  FQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIPMIEK 151

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +V   R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 152 LKSHSTKVGA-RGLILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFAMMAGN 210

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P  RQTLL
Sbjct: 211 PDIVIATPGRFLHLKVEMNLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPANRQTLL 270

Query: 183 FSATMTDELQK-----------------------------------------VSENFLQN 201
           FSAT+   L +                                              +  
Sbjct: 271 FSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQNAFFSVKSSEKEGALLYILQEVIK 330

Query: 202 PKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNL 261
                        E           +  +        ++   T  + I+F   K +V  L
Sbjct: 331 MPTGPTEVSQQRKEEDASAKNWKNKKRKRAEMEKAVNMRESPTKHSTIVFAATKHHVDYL 390

Query: 262 CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321
              L + GF+V  ++G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D
Sbjct: 391 YSLLSEAGFAVSYVYGSLDQTARKIQVQNFRTGMTNILVVTDVAARGIDIPILANVINYD 450

Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            P++ + +IHR+GRT RAGR G +++LV   D  ++  ++  + +++
Sbjct: 451 FPSQPKIFIHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRRL 497


>gi|257077167|ref|ZP_05571528.1| DEAD box protein [Ferroplasma acidarmanus fer1]
          Length = 430

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 130/405 (32%), Positives = 225/405 (55%), Gaps = 9/405 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           + +S  +  ++    + +PT IQ K IP+VL   DV   ++TG+GKTA+++LP+L  +E 
Sbjct: 1   MDISENLKKSLGLMKFTEPTEIQEKAIPVVLTGKDVIIRSKTGSGKTAAYLLPVLNSVE- 59

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
            + + +  + +I+ PTRELA Q      + GK   +   ++ GG     Q ++L  G+D+
Sbjct: 60  -KLKGKSVKAIIILPTRELALQTHRVASRLGKISGIKSTIVYGGASIIRQVEEL-PGSDI 117

Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
           +I TPGRILD +N+  L +++++ LV+DEAD MLDMGFI  I+ I S  P  RQT+L SA
Sbjct: 118 VIGTPGRILDLYNQKYLKLDHVKYLVLDEADLMLDMGFIDDIKKIISFTPEGRQTILLSA 177

Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
           T+  E++ ++ +F+ NP+ ++     +   +I+H +  +                     
Sbjct: 178 TLPAEVKTIANHFMNNPEFVDAGGDEAIPSSIKHLYTVSEKFDK---FSTLMSYIHSYNS 234

Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
           +  I+F   +++   L   L + GF+   IHG + Q +R + +++F+     ++VA+++A
Sbjct: 235 RKAIVFVKTQRSGDLLNLILSRSGFNNVLIHGGMKQHARERSIADFRHIDSGILVATNVA 294

Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
           ARGLDIP++  + NFD P+  E Y HR+GR+GR G+ G+A T+        I +I++   
Sbjct: 295 ARGLDIPNITDIINFDAPDSTETYAHRVGRSGRMGKDGRAMTIFDPSQKSLIQSIQRRNR 354

Query: 366 KKVDWLNGDLSS--LNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
            K++ +N DL +   +    K+ IAQ     +N P P   +   R
Sbjct: 355 IKMEKINIDLETEYTDINYGKL-IAQFRDNEENAPEPDYHSRGRR 398


>gi|91786555|ref|YP_547507.1| ATP-dependent RNA helicase DbpA [Polaromonas sp. JS666]
 gi|91695780|gb|ABE42609.1| ATP-dependent RNA helicase DbpA [Polaromonas sp. JS666]
          Length = 468

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 133/374 (35%), Positives = 203/374 (54%), Gaps = 6/374 (1%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
           L   V+  +   GY+  TPIQ  ++P+ L   D+   A+TG+GKTA+F L +L  L    
Sbjct: 13  LPAHVLANLQQLGYLSMTPIQAASLPVALLGKDLIAQAKTGSGKTAAFGLALLANL---N 69

Query: 68  ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLERGADVL 126
           AR    + ++L PTRELA QVA    +  +       + +  G+P   Q   L+ GA ++
Sbjct: 70  ARRFAVQAMVLCPTRELADQVATEIRRLARAEENIKVVTLCGGVPLRNQVSSLQNGAHIV 129

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGRI+DH  R  L ++ +  LV+DEADRMLDMGF   I  +    P  RQTLLFSAT
Sbjct: 130 VGTPGRIMDHLERETLDVDALNTLVLDEADRMLDMGFYNDIATVAKQCPDERQTLLFSAT 189

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
             + + K+S+ F++ P+ I V      ++  +  +    +   +       LL +     
Sbjct: 190 YPEGIAKLSQQFMKEPQTITVQAQHEKSKIRQRWYEVPESDRDEARLNAVALLLNHYRPA 249

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
           + + FCN K     L   L+ +GFS  A++G ++QR R ++L  F   +  ++VA+D+AA
Sbjct: 250 STLAFCNTKSQCRALVAYLKNKGFSALALYGELEQRERDQVLVQFSNRSCSVLVATDVAA 309

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366
           RGLDI  +  V N DV   AE +IHRIGRTGRA   G A +L + +++  +  IE+L   
Sbjct: 310 RGLDISQLEMVINVDVTPDAEVHIHRIGRTGRADEEGWAISLASMDEMGSVGKIEQLQNA 369

Query: 367 KVDWLNGDLSSLNP 380
           + +W    L+ L P
Sbjct: 370 ESEW--HKLTELTP 381


>gi|15675529|ref|NP_269703.1| ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS]
 gi|71911177|ref|YP_282727.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
 gi|13622729|gb|AAK34424.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS]
 gi|71853959|gb|AAZ51982.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
          Length = 447

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 118/366 (32%), Positives = 185/366 (50%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      V  A+ + G+V PT +Q + IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDYHFKQYVQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNK 117
             L++ +A V++    I  P+RELA Q+ D  ++  K++   + L              K
Sbjct: 61  EKLDEAKAEVQVV---ITAPSRELATQIFDACKQIAKHFQEEIRLANYVGGTDKLRQIEK 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             +    ++I TPGRI D    G L ++     V+DEAD  +DMGF+  +  I + +P +
Sbjct: 118 LKDSQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASLPKS 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVIEQIKTKTVIADTI---DNWLVSTKGRDKNGQLL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         ++F N K+   +L   L   G  V  IHG I  R R +I++  K+   +
Sbjct: 235 EILKTMQPYMAMLFVNTKERADDLHAFLTANGLKVAKIHGGIPPRERKRIMNQVKKLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 KELEKM 360


>gi|302895429|ref|XP_003046595.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256727522|gb|EEU40882.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 897

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 130/396 (32%), Positives = 211/396 (53%), Gaps = 31/396 (7%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ K+IPL+L R D+ G+A+TG+GKTA+FV+PM+  
Sbjct: 87  FQAMGLNSNLLKAITRKGFSVPTPIQRKSIPLILDRKDLVGMARTGSGKTAAFVIPMIER 146

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L    AR    R LIL P+RELA Q     +++G+  +L   LL+GG   E Q   +   
Sbjct: 147 LRAHSAR-FGTRALILSPSRELAIQTLKVVKEFGRGTDLKSVLLVGGDSLEEQFGYMAAN 205

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P +RQ+LL
Sbjct: 206 PDIVIATPGRFLHLKVEMSLDLSSIQYVVFDEADRLFEMGFAAQLTEILHALPPSRQSLL 265

Query: 183 FSATMTDELQKVSENFLQNPK------------------------------RIEVNTPSS 212
           FSAT+   L + +   LQ+P                                  ++    
Sbjct: 266 FSATLPASLVEFARAGLQDPSLVRLDAETKVSPDLESAFFSVKGAEKEGSLLHILHDVIK 325

Query: 213 TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272
               +         + SKK     +    + T  + IIF   K +V  L + L + GF+V
Sbjct: 326 MPVGLPESAKEQSEKGSKKRKRGPEGGSGKPTEHSTIIFTATKHHVEYLANLLIEAGFAV 385

Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
             ++G++DQ +R   + +F+ G   ++V +D+AARG+DIP + +V NFD P + + ++HR
Sbjct: 386 SYVYGSLDQVARRMQVEDFRRGKTNILVVTDVAARGIDIPVLANVINFDFPPQPKVFVHR 445

Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           +GRT RAG+ G +++LV   D  ++  ++  + KK+
Sbjct: 446 VGRTARAGQRGWSYSLVRDTDAPYLLDLQLFLGKKL 481


>gi|195048518|ref|XP_001992542.1| GH24149 [Drosophila grimshawi]
 gi|193893383|gb|EDV92249.1| GH24149 [Drosophila grimshawi]
          Length = 798

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 112/398 (28%), Positives = 187/398 (46%), Gaps = 13/398 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            FA   LS K   A+ ++ ++  T +Q ++I   LQ  DV G A TG+GKT +F++P + 
Sbjct: 64  TFAQFPLSQKTQKALAESKFITATEVQRQSIGPALQGKDVLGAAITGSGKTLAFLIPVLE 123

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +     +R      +I+ PTRELA Q+ +  +K GK+++ +  L+IGG   + +  +++
Sbjct: 124 HLYMNKWSRSDGVGAIIISPTRELAYQIFETLKKVGKHHDFSAGLIIGGKNLKFERTRMD 183

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   ++      +           + +E+LV+DEADR LDMGF   +  I    P  RQT
Sbjct: 184 QCNILICTPGRLLQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNAIIENFPPDRQT 243

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC---------FVATYAQYSKK 231
           LLFSAT T+ L+ ++   LQ P  +   T +ST     +            +      ++
Sbjct: 244 LLFSATQTNTLEDLARLNLQQPVYVGYGTANSTTTPASNAAVLALPELLQQSYVVLPLEE 303

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC--AIHGNIDQRSRMKILS 289
              +          +  I+F    K    L     K    V   A++G + Q  R+ I  
Sbjct: 304 KITMLWSFIKNHLKQKIIVFVASCKQAKYLYEIFCKLRPGVGLLALYGTLHQDKRIAIYE 363

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            F   +  +M A+D+A+RGLD P V  V   D P     YIHR GR+ R   HG+   ++
Sbjct: 364 EFLRKSQVVMFATDVASRGLDFPAVNWVLQLDCPEDVSQYIHRAGRSARNKSHGECLLVM 423

Query: 350 AKEDIKH-IDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386
              + +H I A+ + +  ++  ++ D   L  P  KI+
Sbjct: 424 TPNEEEHMIGALREQLNVEIKSVHIDPKKLFSPRVKIE 461


>gi|30062866|ref|NP_837037.1| ATP-dependent RNA helicase DbpA [Shigella flexneri 2a str. 2457T]
 gi|56479969|ref|NP_707684.2| ATP-dependent RNA helicase DbpA [Shigella flexneri 2a str. 301]
 gi|110805760|ref|YP_689280.1| ATP-dependent RNA helicase DbpA [Shigella flexneri 5 str. 8401]
 gi|30041114|gb|AAP16844.1| ATP-dependent RNA helicase [Shigella flexneri 2a str. 2457T]
 gi|56383520|gb|AAN43391.2| ATP-dependent RNA helicase [Shigella flexneri 2a str. 301]
 gi|110615308|gb|ABF03975.1| ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401]
 gi|281601230|gb|ADA74214.1| ATP-dependent RNA helicase [Shigella flexneri 2002017]
 gi|313650581|gb|EFS14984.1| ATP-independent RNA helicase dbpA [Shigella flexneri 2a str. 2457T]
 gi|332757684|gb|EGJ88015.1| ATP-independent RNA helicase dbpA [Shigella flexneri 4343-70]
 gi|333004752|gb|EGK24274.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-218]
 gi|333018569|gb|EGK37863.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-304]
          Length = 455

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 125/370 (33%), Positives = 198/370 (53%), Gaps = 11/370 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     +   + L+L PTRELA QVA    +  +    T  L +  G PF  Q   L+
Sbjct: 64  QIDAS---LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L +   S  ++HG++    R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVEQSALSLHGDL--EQRDQTLVRFANGSARVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 295 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 354

Query: 361 EKLIEKKVDW 370
             +++ K++W
Sbjct: 355 SDMLQIKLNW 364


>gi|145540724|ref|XP_001456051.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423861|emb|CAK88654.1| unnamed protein product [Paramecium tetraurelia]
          Length = 660

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 133/426 (31%), Positives = 215/426 (50%), Gaps = 32/426 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ ++ L   ++ ++ +  YVKPTPIQ++TIP+ L+R D+ GIA TG+GK+A+F++P++T
Sbjct: 236 EWNEVQLPKNLMNSIRNLNYVKPTPIQMQTIPIGLERKDMIGIAPTGSGKSAAFLIPLIT 295

Query: 62  I-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
                  +  +     P  LI+ P RELA Q+   F+K  + YNL   +++GG   E Q 
Sbjct: 296 YLSTLPKQDDKICKDGPYALIMAPARELAIQIEAEFQKLSQGYNLRSFVIVGGRKEEEQE 355

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L++G ++LI TPGRI D   +  L++     +V+DEAD+M+D+GF   +  I   +  
Sbjct: 356 FHLKKGIEILIGTPGRIKDLLMKKYLVLEQCSWIVLDEADKMIDLGFEQDVNYILDSITT 415

Query: 177 TRQ-----------------------TLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
             +                       T LFSATM  +++K+++ +L+    I +  P   
Sbjct: 416 QMKSEDEIAAELEEKLAQAGERQYRVTHLFSATMPPQVEKLAKRYLRAFCFISIGEPGGG 475

Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
            + IE           K   L              IIF NQKK+V  L  +LEK G++  
Sbjct: 476 KKDIEQKIDMINEAAKKNRLLQLLASNKPPI----IIFANQKKSVEILSKTLEKYGYNSV 531

Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
             HG+  Q+ R   +  FK   I +++A+DLA+RGL +  V  V NFD P   +++IHR 
Sbjct: 532 VYHGSKTQQQREAAVEGFKSKKIDILIATDLASRGLHVEGVQMVINFDAPKNIQDFIHRT 591

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           GRTGRAG+ G A T +   D      +++ + K    +  +L+      +K      N  
Sbjct: 592 GRTGRAGKRGLAVTFLTNSDSDLFYDLKEYLIKSGQNVPPELAQHTASNQKPGSVPDNVP 651

Query: 394 RKNNPI 399
           R+   I
Sbjct: 652 RRKQVI 657


>gi|1438969|gb|AAB04136.1| RNA helicase [Caenorhabditis elegans]
          Length = 763

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 114/372 (30%), Positives = 175/372 (47%), Gaps = 21/372 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+  L+  +   V  AGY K TPIQ   +PLV Q +D+   AQTG+GKTA+F+LP++T
Sbjct: 342 TFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMT 401

Query: 62  ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            L               PR +IL PTRELA Q+ +   K+     + +  + GG+     
Sbjct: 402 RLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYN 461

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-----LDMGFIPYIQNI 170
             ++E+GA +++ T GRI      G + ++     V+DEADRM             +   
Sbjct: 462 KGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYD 521

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
           +      RQTL+FSAT  D +Q+ +  FL+    +        A            +  K
Sbjct: 522 SMPRKENRQTLMFSATFPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFERCERSEK 581

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK----------QGFSVCAIHGNID 280
           K  LL+ L    D+           K  +                         IHG  +
Sbjct: 582 KDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAITIHGARE 641

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           QR R + L  F+ G+  +++A+ +A RGLDI  V HV N+D+P+  ++YIHRIGRTGR G
Sbjct: 642 QRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVG 701

Query: 341 RHGKAFTLVAKE 352
             G+A + ++++
Sbjct: 702 NSGRATSFISED 713


>gi|17507877|ref|NP_491963.1| Germ-Line Helicase family member (glh-1) [Caenorhabditis elegans]
 gi|51338772|sp|P34689|GLH1_CAEEL RecName: Full=ATP-dependent RNA helicase glh-1; AltName:
           Full=Germline helicase 1
 gi|14625283|gb|AAB52901.2| Germ line helicase protein 1, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 763

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 114/372 (30%), Positives = 175/372 (47%), Gaps = 21/372 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+  L+  +   V  AGY K TPIQ   +PLV Q +D+   AQTG+GKTA+F+LP++T
Sbjct: 342 TFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMT 401

Query: 62  ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            L               PR +IL PTRELA Q+ +   K+     + +  + GG+     
Sbjct: 402 RLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYN 461

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-----LDMGFIPYIQNI 170
             ++E+GA +++ T GRI      G + ++     V+DEADRM             +   
Sbjct: 462 KGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYD 521

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
           +      RQTL+FSAT  D +Q+ +  FL+    +        A            +  K
Sbjct: 522 SMPRKENRQTLMFSATFPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFERCERSEK 581

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK----------QGFSVCAIHGNID 280
           K  LL+ L    D+           K  +                         IHG  +
Sbjct: 582 KDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAITIHGARE 641

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           QR R + L  F+ G+  +++A+ +A RGLDI  V HV N+D+P+  ++YIHRIGRTGR G
Sbjct: 642 QRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVG 701

Query: 341 RHGKAFTLVAKE 352
             G+A + ++++
Sbjct: 702 NSGRATSFISED 713


>gi|312889170|ref|ZP_07748727.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311298332|gb|EFQ75444.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 404

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 142/387 (36%), Positives = 211/387 (54%), Gaps = 13/387 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D   +  +   +   GY  PTPIQ   IP++L+ HD+   AQTGTGKTA+++LP+L
Sbjct: 1   MTFQDFNFNEPLFEGIQSMGYTTPTPIQGMAIPIILEGHDLIACAQTGTGKTAAYLLPVL 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117
             + +         TLIL PTRELA Q+    +       +T   + GG     +E Q K
Sbjct: 61  DHISRKT--KPKINTLILAPTRELAQQIDQQIQGLAYFTGVTSVAIFGGGDGSVYEQQRK 118

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            ++  A++LI TPGR L H   G L +++++ L++DEADRMLDMGF+  I  I S +P  
Sbjct: 119 AIQHHANILIATPGRFLAHLASGVLKLDDLQHLILDEADRMLDMGFMDDIMRIISFLPKK 178

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSATM   ++K++ + L NP++I +      ++         Y  Y  +   L +
Sbjct: 179 RQTLLFSATMPGRIRKLAGSILNNPQQINIAL----SQPAVGIDQQIYKVYDNQKTALTE 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           +L       + IIF + K+ V  +   L K    V A H ++ Q  R +IL  FK   +Q
Sbjct: 235 MLLKDAAYTSVIIFASTKEKVKEVYKVLGKLKVKVEAFHSDLKQAEREEILLQFKNRKLQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++ +D+ +RG+D+  +  V N+DVP   E+YIHRIGRT RA   G A T V + D + +
Sbjct: 295 VLIGTDVLSRGIDVEGIDLVINYDVPGDPEDYIHRIGRTARAATTGTAITFVNERDQRKL 354

Query: 358 DAIEKLIEK--KVDWLNGDLSSLNPPL 382
             IE LI +  KV  L  +L    PP+
Sbjct: 355 INIESLIGREIKVSELPAELGE--PPV 379


>gi|251783115|ref|YP_002997418.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391745|dbj|BAH82204.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323127866|gb|ADX25163.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 447

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 118/366 (32%), Positives = 185/366 (50%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+ + G+V PT +Q + IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDYHFKQYIQQALEEIGFVNPTEVQQRLIPIVNSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNK 117
             L++ +A V++    +  P+RELA Q+ D  ++  K+    + L              K
Sbjct: 61  EKLDEAKAEVQVV---VTAPSRELATQIFDACKQIAKHSPKDIRLANYVGGTDKLRQIEK 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++     V+DEAD  +DMGF+  +  I + +P +
Sbjct: 118 LKSGQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASLPKS 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI++  V+T  +      L   
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVIEQIKTETVIADTIDNWLVSTKGRDKNGQILEIL 237

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                      +   N K+   +L   L   G  V  IHG I  R R +I++  K+   +
Sbjct: 238 KTMQPYMAMLFV---NTKERADDLHAFLVANGLKVAKIHGGIPPRERKRIMNQVKKLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 KELEKM 360


>gi|308802996|ref|XP_003078811.1| putative RNA helicase (ISS) [Ostreococcus tauri]
 gi|116057264|emb|CAL51691.1| putative RNA helicase (ISS) [Ostreococcus tauri]
          Length = 693

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 123/372 (33%), Positives = 183/372 (49%), Gaps = 14/372 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F   GL+  V   +   GY     IQ +T+ + L   DV G A+TG GKT +FVLP+  
Sbjct: 84  NFK--GLTDPVKTTLRKKGYDALFQIQAETLEIALGGRDVVGRARTGCGKTLAFVLPIIE 141

Query: 60  ------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
                        R + R P  ++L PTRELA QV  +F+  G +Y      + GG P+ 
Sbjct: 142 LMAKMSPMPANGRRVQGRRPMCVVLAPTRELAKQVFADFDWIGNSYGFKSLCVYGGAPYR 201

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
            Q   L  G D++I TPGR+ DH  R  L+M +++  V+DEAD ML+MGF+  ++ I   
Sbjct: 202 EQEMGLRSGVDIVIGTPGRMKDHLERKTLMMTDLKFRVLDEADEMLNMGFVDDVETILKS 261

Query: 174 VPFTRQTLLFSATMTDELQKVSENF--LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
               +  LLFSAT+   ++ +S+ F          V      A       +       + 
Sbjct: 262 SGDVQT-LLFSATLPSWVKDISKRFLKPNYSTVDLVGDEKQKASGAVQHMLLPCQWSDRV 320

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHS-LEKQGFSVCAIHGNIDQRSRMKILSN 290
             +   +          I+FC+ K++   LC +  ++      A+HG++ Q  R  +LS 
Sbjct: 321 DLVCDVIRSKAPGGGRVIVFCDTKRDCGELCDNLQKEIPKGAKALHGDVSQSQREVVLSL 380

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+E   Q++VA+D+AARGLDI  V  V   + P  AE YIHR GRTGRAG  G + TL  
Sbjct: 381 FREDKFQVLVATDVAARGLDITGVELVIQCEPPKDAETYIHRSGRTGRAGATGISVTLCT 440

Query: 351 KEDIKHIDAIEK 362
             +   +  IE+
Sbjct: 441 PRNEWAVPNIER 452


>gi|325188903|emb|CCA23433.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 684

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 111/403 (27%), Positives = 200/403 (49%), Gaps = 9/403 (2%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
            + GLS  +   +  AG     P+Q+++   +++  D+ G ++TG+GKT +F LP++  L
Sbjct: 84  TEFGLSDTLFSNLKKAGITDLFPVQVQSFSTMMKGVDLVGRSKTGSGKTLAFGLPIIEKL 143

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
                  R P  LIL PTRELA QV+    +           ++GG+P+ +Q  ++  G 
Sbjct: 144 LSRSGSRRNPGALILLPTRELATQVSSELSRLSPQL--KTVTIVGGVPYHSQESRIRAGV 201

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
           D+++ TPGRI+D F +  L   +++  V+DEAD ML  GF   ++ I S VP TRQ +++
Sbjct: 202 DIVVGTPGRIMDLFEKKTLSFEDVQFTVLDEADMMLKFGFQEAVETILSWVPETRQCVMW 261

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SAT    +  +++ +L++   I++               A     + +   LQ++L+   
Sbjct: 262 SATFPKWVTSLTKKYLKDAVTIDLVGSEEAHVPTTVSHKAINVPSNYRVVALQRILEKYA 321

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
           +    ++F   K     + + LE          G++ Q  R   + NF++G ++ +  +D
Sbjct: 322 SQGQSLVFTETKHEANEIANGLEGCNVQALH--GDLSQGVRASTMQNFRKGLVKTLACTD 379

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARGLDI +V  V ++ +PN  EN++HR GRTGRAG+ G +      ++ + I  +E  
Sbjct: 380 IAARGLDIANVDLVVHYRLPNDRENFVHRAGRTGRAGKTGTSIVFFENQEYRDIKDLENR 439

Query: 364 IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
              K+ + +      +      D       ++   +  KS+ F
Sbjct: 440 F--KIQFAHAATPDADDFR---DTKVKEVTKRLQKVSDKSSDF 477


>gi|303242448|ref|ZP_07328930.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302590033|gb|EFL59799.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 386

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 100/371 (26%), Positives = 182/371 (49%), Gaps = 9/371 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++GL+P +V A+       PT IQ + IP  L+  D+   + TGTGKT +++LP+  
Sbjct: 4   SFENMGLNPTLVTALKKENITIPTDIQQRVIPEALKNKDIVAQSGTGTGKTLAYLLPLFE 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV--ALLIGGIPFEAQNKKL 119
            +    A ++  + +IL PT ELA Q+    E+  +N ++ +    +IG +  + Q +KL
Sbjct: 64  KV---NAELKEMQAIILCPTHELAVQIMRQIERLSQNSDIKIKGTTIIGNVNIDRQIEKL 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +    +++ TPGRIL+   + K+  + I+ ++IDEADR++D     +++ +       RQ
Sbjct: 121 KEKPHIIVGTPGRILELIKKRKISAHTIKTIIIDEADRLMDENNTEFVKAVIKSTLKERQ 180

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + +SAT+   ++      ++  K  +V          +      +    +    + + L
Sbjct: 181 VMAYSATIPKRVET---GIIEQMKEAQVIRVEEKLSVPDTISHMCFLAEKRDKIEVLRKL 237

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG-TIQL 298
                 +  I+F N + N + +  S  K              +   K      +   IQL
Sbjct: 238 VRILEPQKAIVFVNNQGNEIEIFTSKLKYHGLGVEGIHGTTHKLERKKAMEEFKSGKIQL 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++ASD+AARGL I  V H+FN D+P   + Y+HR+GR+GR G  G A ++  K +++ I 
Sbjct: 298 LIASDIAARGLHIEGVTHIFNIDIPEDVKAYVHRVGRSGRNGNTGMAVSIATKRELELIK 357

Query: 359 AIEKLIEKKVD 369
             EK +   ++
Sbjct: 358 KYEKELSIHIE 368


>gi|301632627|ref|XP_002945383.1| PREDICTED: ATP-dependent RNA helicase rhlE-like [Xenopus (Silurana)
           tropicalis]
          Length = 564

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 130/457 (28%), Positives = 216/457 (47%), Gaps = 51/457 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-----QRH--DVCGIAQTGTGKTASF 55
           F  LGL+ ++V AV D GY +PT +Q K IP+ +          D+   +QTG+GKTA+F
Sbjct: 34  FVRLGLATELVQAVRDLGYTQPTAVQEKAIPMAMGRDAEAGRFIDLMVSSQTGSGKTAAF 93

Query: 56  VLPMLT---------------------------------------ILEKGRARVRMPRTL 76
           +LP+L                                               +  +P  L
Sbjct: 94  LLPVLHTLVRQQAGQQASERAEYERLCAEATARGEATPKRTRRKDPTNPRNFKAAVPGAL 153

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           IL PTRELA QVA +     ++        + G           + A++++ TPGR+LD 
Sbjct: 154 ILCPTRELAQQVAHDAIDLVRHCKGLRVANVVGGMPYQLQIAKLQNANLVVATPGRLLDL 213

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
               ++ ++ ++ LV+DEADRMLD+GF   +  I  L    +QT++FSAT    +Q+++ 
Sbjct: 214 QRSMQIKLDQVQFLVVDEADRMLDLGFSDDLAEINQLTSQRKQTMMFSATFAPRIQQLAM 273

Query: 197 NFLQN--PKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254
             + +      ++   S   +      V  +A  ++    +        ++   I+F + 
Sbjct: 274 RVMHDGGSAVQKLTIDSPQEKHANIKQVLFWADNAQHKRKMLDHWLRDASIDQAIVFAST 333

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           +     L + L++ GFS  A+HG + Q  R + L   + G +Q++VA+D+AARG+D+P +
Sbjct: 334 QMECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPTI 393

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLN 372
            HVFNF +P +AE+Y HRIGRTGRAGR G A T     D + I  IE    +  K + + 
Sbjct: 394 THVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIEGYSRQPFKAEVIP 453

Query: 373 GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409
           G   +   P  + +  +    R+N+   ++    + R
Sbjct: 454 GMEPTQRFPQGRPE-GRGREGRENHSRDRRFGRGEGR 489


>gi|183984792|ref|YP_001853083.1| ATP-dependent RNA helicase, RhlE1 [Mycobacterium marinum M]
 gi|183178118|gb|ACC43228.1| ATP-dependent RNA helicase, RhlE1 [Mycobacterium marinum M]
          Length = 524

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 133/424 (31%), Positives = 208/424 (49%), Gaps = 10/424 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+   ++  +   G   P PIQI+T+P  L   DV G  +TG+GKT +F LPM++
Sbjct: 77  TFADLGVGESLIEVLAARGISHPFPIQIETLPDTLGGRDVLGRGKTGSGKTLAFSLPMVS 136

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     R   P  L+L PTRELA+Q+    +       L V  + GG+P   Q   L  
Sbjct: 137 RLAGRPRRPARPTGLVLAPTRELASQITATLQPLAAVNGLRVTTIFGGVPQGRQVTALNS 196

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++  PGR+ D   +  + +++IEI VIDEAD M D+GF+P +  I +  P   Q L
Sbjct: 197 GVDIVVACPGRLEDLMKQRLISLDSIEITVIDEADHMADLGFLPGVTRILAATPSGGQRL 256

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ + + K+   FL +     V++  S    + H         +KK  + +    +
Sbjct: 257 LFSATLDNGVDKLVNRFLHDAVLHSVDSSDSPVPQMVHHVFHVSGAAAKKDLVHRLASGT 316

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K     L   L + G     +HGN+ Q +R + L+ F +G  +++VA
Sbjct: 317 ----GRRILFMRTKHQARKLAKQLTESGVPAVDLHGNLSQPARDRNLAAFSKGEARVLVA 372

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ +  +  V + D P   + Y+HR GRT RAG  G   T+V  E  K   A+ 
Sbjct: 373 TDIAARGVHVDGIELVVHIDPPAEHKAYLHRSGRTARAGNAGDVVTVVLPEQRKDTHALM 432

Query: 362 KLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +    +V    +  D ++++  +  I   Q   A K    P+K+      KK  + +K  
Sbjct: 433 RRAGIRVTPQEVTADSAAVHELVGDIAPYQ-APAPKQVAAPKKAGA---PKKGAAPKKGA 488

Query: 420 IPLK 423
            P  
Sbjct: 489 APRN 492


>gi|332019714|gb|EGI60184.1| DEAD-box helicase Dbp80 [Acromyrmex echinatior]
          Length = 481

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 101/393 (25%), Positives = 172/393 (43%), Gaps = 17/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F  L L P ++  V   G+  P+ IQ   +P +L     ++   +Q+GTGKTA+FVL M
Sbjct: 95  TFDALHLKPALLKGVYALGFNAPSRIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 154

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++        P+ L L PT ELA Q  +   K  +                ++  K+
Sbjct: 155 LSRVDVT---KEYPQVLCLSPTYELAIQTGEVAAKMSRFCPEIKIKYAVRGEEISRGSKI 211

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                +             +   L      ++ +    +   G       I  L+P   Q
Sbjct: 212 SEHIIIGTPGKVLDWGQKFKFFDLSKISVFVLDEADVMIATQGHQDQCIRIHKLLPRACQ 271

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            + FSAT   E+   +E  + NP  I +     + + I+  ++       K  A+    +
Sbjct: 272 MMFFSATYEPEVMNFAEIIVSNPLIIRLLREEESLDNIKQYYIRCKNVDEKYTAIT--NI 329

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+   IIFC+ KK    L   + K G +V  + G++    R+ +L  F+ G  +++
Sbjct: 330 YGVITIGQAIIFCHTKKTASWLAGKMTKDGHAVAILSGDLTVEQRISVLDRFRAGLEKVL 389

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           + +++ ARG+D+  V  V NFD+P         E Y+HRIGRTGR G+ G A  L+ +  
Sbjct: 390 ITTNVLARGIDVEQVTIVVNFDLPMDQNRQADCETYLHRIGRTGRFGKSGIAINLIDSDH 449

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
            ++    IEK   KK+ +L+ + +     +EKI
Sbjct: 450 AMELCRTIEKHFGKKIHYLDAEDAD---EIEKI 479


>gi|50823|emb|CAA31025.1| unnamed protein product [Mus musculus]
          Length = 407

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 194/378 (51%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L   ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 34  NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF-EAQNKKLE 120
            LE      +    L+L PTRELA Q+       G     T    IGG        K   
Sbjct: 94  QLEIEFKETQA---LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQA 150

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I      +  + Q 
Sbjct: 151 EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYERVQKLNTSIQV 210

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I+  ++    +  K   L      
Sbjct: 211 VLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDL--Y 268

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   ++   F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 269 ETLTITQAVIFLNTRRKVDWLTEKMQAIYFTVSALHGDMDQKERDVIMREFRSGSSRVLI 328

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V +ED + +  I
Sbjct: 329 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRHI 388

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      V+ +  + + L
Sbjct: 389 ETFYNTTVEEMPMNGADL 406


>gi|156087495|ref|XP_001611154.1| p68 RNA helicase protein [Babesia bovis T2Bo]
 gi|154798408|gb|EDO07586.1| p68 RNA helicase protein, putative [Babesia bovis]
          Length = 568

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 190/368 (51%), Gaps = 4/368 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +   +  +   + + G+++PTPIQ       L   DV G++QTG+GKT +F+LP L 
Sbjct: 184 TFDEAVFNEAIQRIIKNMGFIEPTPIQKVGWTSCLTGRDVVGVSQTGSGKTLAFLLPGLL 243

Query: 62  IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            L  +        P  LIL PTREL  Q  +  +K+ +  NL  A+L GG+    Q ++L
Sbjct: 244 HLLAQPPVTPGNGPVILILAPTRELCQQTYEETKKFMRVMNLRGAILYGGVSKYQQQQQL 303

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             G D+++ TPGR+LD  + G L ++ +   V+DEADRMLDMGF P I+ I S +   RQ
Sbjct: 304 TGGVDIMVATPGRLLDCLSSGLLRLDRVSYFVLDEADRMLDMGFEPQIRMIASQIRPDRQ 363

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT    +++++  F +                          +  +    L   L
Sbjct: 364 TLLFSATWPASIRRLASEFCKTNCIYIQVGDKELTANPNITQTVKVLRSDETFPFLCNFL 423

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            ++   K  +IF   +     L   L ++G +  +IHGN  Q  R   +S F+ G + +M
Sbjct: 424 TTEAYNKKILIFVESRIGADTLVRDLARRGLNALSIHGNKSQSQRDHTVSQFRSGAVNIM 483

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE--DIKHI 357
           VA+D+A+RGLDI ++ +V N DVP   E+YIHRIGRT R    G +  L   +  D +  
Sbjct: 484 VATDVASRGLDIKNIDYVVNMDVPRTIEDYIHRIGRTARGNMKGNSLLLFVNDYPDPRKA 543

Query: 358 DAIEKLIE 365
              ++LIE
Sbjct: 544 RFAQRLIE 551


>gi|68475061|ref|XP_718416.1| likely translation initiation factor eIF4A subunit [Candida
           albicans SC5314]
 gi|68475598|ref|XP_718147.1| likely translation initiation factor eIF4A subunit [Candida
           albicans SC5314]
 gi|241948159|ref|XP_002416802.1| ATP-dependent RNA helicase eif4A, putative; eukaryotic initiation
           factor 4A, putative [Candida dubliniensis CD36]
 gi|2500523|sp|P87206|IF4A_CANAL RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|2190248|dbj|BAA20371.1| translation initiation factor [Candida albicans]
 gi|46439903|gb|EAK99215.1| likely translation initiation factor eIF4A subunit [Candida
           albicans SC5314]
 gi|46440181|gb|EAK99490.1| likely translation initiation factor eIF4A subunit [Candida
           albicans SC5314]
 gi|223640140|emb|CAX44387.1| ATP-dependent RNA helicase eif4A, putative [Candida dubliniensis
           CD36]
 gi|238879373|gb|EEQ43011.1| eukaryotic initiation factor 4A [Candida albicans WO-1]
          Length = 397

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 198/377 (52%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L P +V  +   GY  P+ IQ + I  + +  DV   AQ+GTGKTA+F +  L 
Sbjct: 24  KFDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            + +     +    LIL PTRELA Q+ +     G    +TV   IGG       +    
Sbjct: 84  RINENEKATQA---LILAPTRELALQIKNVITAIGLYLKVTVHASIGGTSMSDDIEAFRS 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  +++ TPGR+LD   R     + +++ ++DEAD ML  GF   I NI  L+P T Q +
Sbjct: 141 GVQIVVGTPGRVLDMIERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQIV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+ NP RI V     T E I+  ++    +  K   L       
Sbjct: 201 LLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVELEDYKFDCLCDL--YD 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN +  V  L + L +Q F+V AIH ++ Q  R  I+  F+ G+ +++++
Sbjct: 259 SISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILIS 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V   D+  +  IE
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           K    +++ +  D+ +L
Sbjct: 379 KFYSTQIEEMPADIGAL 395


>gi|255956777|ref|XP_002569141.1| Pc21g21690 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590852|emb|CAP97066.1| Pc21g21690 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 913

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 130/403 (32%), Positives = 210/403 (52%), Gaps = 38/403 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  ++ A+   G+  PTPIQ KTIP+++   DV G+A+TG+GKTASFV+PM   
Sbjct: 87  FQAMGLSMTLLKAITRKGFSVPTPIQRKTIPVIMDDKDVVGMARTGSGKTASFVIPM-IE 145

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
             K  +     R LI+ P+RELA Q     ++ GK  NLT  LLIGG   E Q   +   
Sbjct: 146 KLKSHSTTFGARALIMSPSRELALQTMKVVKEMGKGTNLTSVLLIGGDSLEDQFGMMASN 205

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       + +++I+ +V DEADR+ +MGF   +  I   +P  RQTLL
Sbjct: 206 PDIIIATPGRFLHLKVEMDMDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPTNRQTLL 265

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   L + +   LQ P  I ++T +  +  +++ F A  +   +   L       +
Sbjct: 266 FSATLPKSLVEFARAGLQEPSLIRLDTENKVSPDLQNAFFAIKSSDKEGALLHILHDIIK 325

Query: 243 DTM-------------------------------------KNGIIFCNQKKNVVNLCHSL 265
                                                    + I+F   K +V  L   L
Sbjct: 326 MPTGETDIGVRLRQEAENPSRKRKRSDVRLPSGFKESPTKHSTIVFAATKHHVDYLYSLL 385

Query: 266 EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNR 325
            + GF+    +G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D P++
Sbjct: 386 VEAGFATSYAYGSLDQTARNHHVQNFRSGISNILVVTDVAARGIDIPVLANVINYDFPSQ 445

Query: 326 AENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            + +IHR+GRT RAG+ G +++LV  +D  ++  ++  + +++
Sbjct: 446 PKIFIHRVGRTARAGQKGWSYSLVRDKDAPYLLDLQLFLGRRL 488


>gi|195612018|gb|ACG27839.1| nucleolar RNA helicase 2 [Zea mays]
          Length = 744

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 130/406 (32%), Positives = 206/406 (50%), Gaps = 12/406 (2%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           LGL  ++V  +   G     PIQ   +   L+  D+   A+TGTGKT +F +PM+  L +
Sbjct: 93  LGLPDELVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGIPMIKQLIE 152

Query: 66  GR-----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
                   R R PR L+L PTRELA QV    ++             GG+ +  Q   L 
Sbjct: 153 QDDGRITRRGRTPRVLVLAPTRELAKQVEKEIKESAPKLGTVCV--YGGVSYNVQQNALS 210

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DV++ TPGRI+D  N G L +  ++ LV+DEAD+ML +GF   ++ I   +P  RQ+
Sbjct: 211 RGVDVVVGTPGRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQLPAGRQS 270

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   ++K+S  +L NP  I++               A     + K  +L  L+ 
Sbjct: 271 MLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTATSKRTVLSDLIT 330

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   KK+             +  A+HG+I Q  R + L+ F++G   ++V
Sbjct: 331 VYAKGGKTIVFTRTKKDADE-VSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLV 389

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDIP+V  + ++++PN  E ++HR GRTGRAG+ G A  +      + + ++
Sbjct: 390 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQKRTVKSL 449

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406
           E+ +    ++++    S+   LE    A+H  A      P+ +  F
Sbjct: 450 ERDVGCNFEFISP--PSIEEVLE--SSAEHVIATLRGVHPESTKYF 491


>gi|125601387|gb|EAZ40963.1| hypothetical protein OsJ_25445 [Oryza sativa Japonica Group]
          Length = 414

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 125/397 (31%), Positives = 207/397 (52%), Gaps = 11/397 (2%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
            G+  PT IQ + IP  LQ  DV G+ QTG+GKTA+F LP++  L +   R       +L
Sbjct: 1   MGWKAPTRIQAEVIPFALQGRDVIGVGQTGSGKTAAFALPIIQALLEHEHRPCF-FACVL 59

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR-ILDHF 137
            PTRELA Q+A  FE  G   +L  ++LIGGIP  +Q   L +   V++ TPGR +    
Sbjct: 60  APTRELAIQIAKQFEALGSAISLQCSVLIGGIPRTSQTISLAKRPHVVVGTPGRLLDHLT 119

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
           N      N ++ LV+DEAD +L + F   + +I +++P  R+T LFSATMT++++K+   
Sbjct: 120 NTKGFSFNKLKYLVLDEADDLLKVDFQKAVDDILNVIPKERRTFLFSATMTEKVKKLRRA 179

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
            L+NP ++EV +  S  +T+       Y   +K        + ++      ++F    ++
Sbjct: 180 CLKNPVKVEVASKYSLVDTL---RQDLYVVPAKYKDCYLIHVLNKMPGSMIMVFVRTCES 236

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
              L   L    F   +I G + Q  R+  L+ F+     ++V +D+A+RGLDI  V  V
Sbjct: 237 TRLLALMLRNLRFKAISISGQMSQDKRLGALNRFRTRDCNILVCTDVASRGLDIQGVDVV 296

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI-EKKVDWLNGDLS 376
            N+D P  +++YIHR+GRT RAG+ G A +LV + + +     E+ +  +++     D  
Sbjct: 297 INYDFPLNSKDYIHRVGRTARAGQSGYAVSLVNQFEGEFFKLTEQFLGGEEIPARKVDAD 356

Query: 377 SLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            +    E+I  ++    +  N      +G+ +R +  
Sbjct: 357 EIMILHERIYDSKRIALKTMNE-----SGYHKRMRRR 388


>gi|115397285|ref|XP_001214234.1| hypothetical protein ATEG_05056 [Aspergillus terreus NIH2624]
 gi|121738336|sp|Q0CMM8|DBP10_ASPTN RecName: Full=ATP-dependent RNA helicase dbp10
 gi|114192425|gb|EAU34125.1| hypothetical protein ATEG_05056 [Aspergillus terreus NIH2624]
          Length = 928

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 124/408 (30%), Positives = 203/408 (49%), Gaps = 43/408 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIP+++   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 91  FQAMGLNANLLKAITRKGFSVPTPIQRKTIPVIMDDRDVVGMARTGSGKTAAFVIPMIEK 150

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   ++    R LIL P+RELA Q     ++ GK  +L   LL+GG   E Q   +   
Sbjct: 151 LKSHSSKFGA-RGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFGMMAGN 209

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P TRQTLL
Sbjct: 210 PDIVIATPGRFLHLKVEMNLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPTTRQTLL 269

Query: 183 FSATMTDELQ------------------------------------------KVSENFLQ 200
           FSAT+   L                                            +    ++
Sbjct: 270 FSATLPKSLVEFARAGLQEPTLIRLDTESKISPDLQNAFFSVKSADKEGALLYILHEVIK 329

Query: 201 NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVN 260
            P            E           +  +        ++   T  + I+F   K +V  
Sbjct: 330 MPTGPTEVAQRLQEEKANSKDSKNSKKRKRSEMDKAVNMKESPTKHSTIVFAATKHHVDY 389

Query: 261 LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNF 320
           L   L + GF+V   +G++DQ +R   ++NF+ G   ++V +D+AARG+DIP + +V N+
Sbjct: 390 LYSLLREAGFAVSYAYGSLDQTARKIQVNNFRTGLSNILVVTDVAARGIDIPILANVINY 449

Query: 321 DVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           D P++ + ++HR+GRT RAGR G +++LV   D  ++  ++  + +++
Sbjct: 450 DFPSQPKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRRL 497


>gi|322488123|emb|CBZ23369.1| putative nucleolar RNA helicase II [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 684

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 111/384 (28%), Positives = 173/384 (45%), Gaps = 17/384 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  ++P VV A+   G     P+Q  T   +++  DV   A+TG+GKT +F +P++  
Sbjct: 88  FSEFEMNPTVVKALQSRGIESMFPVQALTFNAIMRSTDVLVQARTGSGKTLAFGIPIVER 147

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L        R R P  +I  PTRELA QV D          +T   L GG+ +  Q + L
Sbjct: 148 LLKLPSHLIRGRGPAAVIFCPTRELAIQVQDVLCGISCGLVVT--ALYGGVAYANQERVL 205

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-- 177
             G D+++ TPGR  D   +G L  + + +  +DEAD MLD+GF   I+ + S V     
Sbjct: 206 RSGVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNG 265

Query: 178 --------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                    QTLLFSAT+ + +   S           V   +    +    +        
Sbjct: 266 SVGAEKPVHQTLLFSATVPEWVHTCSFIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSE 325

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
               L   +          ++F N KK+  +L  +  K         G++ Q  R   + 
Sbjct: 326 ISSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNTKLDSQCLH--GDMQQEQRESTMK 383

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F++    +++A+D+AARGLD+P V  V     P   + +IHR GRTGRAGR G    L 
Sbjct: 384 SFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLY 443

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNG 373
              +   ++ IE+  + K D L  
Sbjct: 444 QPREEYVVERIERHAKMKFDVLPA 467


>gi|258538949|ref|YP_003173448.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
 gi|257150625|emb|CAR89597.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
          Length = 448

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 129/449 (28%), Positives = 211/449 (46%), Gaps = 17/449 (3%)

Query: 1   MD--FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           MD  F    L P V+  +   G  +PTPIQ K IP +L+  ++ G +QTG+GKT +F++P
Sbjct: 1   MDNQFKQYQLKPFVIAGLDAMGITQPTPIQKKVIPALLRGENLVGQSQTGSGKTHAFLVP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEK--YGKNYNLTVALLIGGIPFEAQN 116
           +L++++      ++    I  P+RELA Q+    ++    +       L+ G    +  +
Sbjct: 61  LLSLVDPNEDATQVV---ITAPSRELANQIYAVAQQLTQTEPAIRISRLVGGMDKQKQID 117

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K       V I TPGRILD   R  L+  ++   V+DEAD  LDMGF+  +  I S  P 
Sbjct: 118 KLQAHQPHVAIGTPGRILDMIKRYDLVPASVRHFVVDEADMTLDMGFLETVDAIASSFPE 177

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q  +FSAT+  +L+     ++ +P  IE+   S  A+T+E+  +A   +   +     
Sbjct: 178 HLQMAVFSATIPQKLEPFLRKYMDHPTVIELKPQSVIADTVENILIAAKGRDKNELIYQL 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               +       +IF N K +V  +   L+ QG  V  IHG +  R R +I+    +   
Sbjct: 238 ---VTMGHPFLVLIFANTKTSVDAIHDYLKHQGLKVAKIHGGVQPRERRRIMKEVADLKY 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VA+DLAARG+DI  V  V N ++P   E +IHR+GRTGR G  G A TL        
Sbjct: 295 QYVVATDLAARGIDIKGVSMVINAEIPRDQEFFIHRVGRTGRNGLPGTAITLYEPGQEDQ 354

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           I  +E  +  K          L    ++    Q    +++  +  +      ++K+  + 
Sbjct: 355 IAELEH-MGIKFKPKTIQKGELVDTYDRNRRVQRKPKQEDTSLAIRGLVKKAKQKHMPNY 413

Query: 417 KSHI------PLKESEKISKLQQDIQEND 439
           +  I        K + K+++ Q  + E  
Sbjct: 414 RKKIRTAVLLERKRNAKVARRQALLAEKR 442


>gi|229553792|ref|ZP_04442517.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus LMS2-1]
 gi|229312844|gb|EEN78817.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus LMS2-1]
          Length = 448

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 129/449 (28%), Positives = 211/449 (46%), Gaps = 17/449 (3%)

Query: 1   MD--FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           MD  F    L P V+  +   G  +PTPIQ K IP +L+  ++ G +QTG+GKT +F++P
Sbjct: 1   MDNQFKQYQLKPFVIAGLDAMGITQPTPIQKKVIPALLRGENLVGQSQTGSGKTHAFLVP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEK--YGKNYNLTVALLIGGIPFEAQN 116
           +L++++      ++    I  P+RELA Q+    ++    +       L+ G    +  +
Sbjct: 61  LLSLVDPNEDATQVV---ITAPSRELANQIYAVAQQLTQTEPAIRISRLVGGMDKQKQID 117

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           K       V I TPGRILD   R  L+  ++   V+DEAD  LDMGF+  +  I S  P 
Sbjct: 118 KLQAHQPHVAIGTPGRILDMIKRYDLVPASVRHFVVDEADMTLDMGFLETVDAIASSFPE 177

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             Q  +FSAT+  +L+     ++ +P  IE+   S  A+T+E+  +A   +   +     
Sbjct: 178 HLQMAVFSATIPQKLEPFLRKYMDHPTVIELKPQSVIADTVENILIAAKGRDKNELIYQL 237

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
               +       +IF N K +V  +   L+ QG  V  IHG +  R R +I+    +   
Sbjct: 238 ---VTMGHPFLVLIFANTKTSVDAIHDYLKHQGLKVAKIHGGVQPRERRRIMKEVADLKY 294

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q +VA+DLAARG+DI  V  V N ++P   E +IHR+GRTGR G  G A TL        
Sbjct: 295 QYVVATDLAARGIDIKGVSMVINAEIPRDQEFFIHRVGRTGRNGLPGTAITLYEPGQEDQ 354

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           I  +E  +  K          L    ++    Q    +++  +  +      ++K+  + 
Sbjct: 355 IAELEH-MGIKFKPKTIQKGELVDTYDRNRRVQRKPKQEDTSLAIRGLVKKAKQKHMPNY 413

Query: 417 KSHI------PLKESEKISKLQQDIQEND 439
           +  I        K + K+++ Q  + E  
Sbjct: 414 RKKIRTAVLLERKRNAKVARRQALLAEKR 442


>gi|154286484|ref|XP_001544037.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|160380603|sp|A6QUM7|DBP10_AJECN RecName: Full=ATP-dependent RNA helicase DBP10
 gi|150407678|gb|EDN03219.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 900

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 131/401 (32%), Positives = 215/401 (53%), Gaps = 36/401 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  LGL+  ++ A+   G+  PTPIQ KTIPLVL   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 88  FQSLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEK 147

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q + +   
Sbjct: 148 LKSHSAKFGS-RALILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMASN 206

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 207 PDIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFATQLTEILHGLPSSRQTLL 266

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA------------------- 223
           FSAT+   L + +   LQ P  I ++  S  +  +++ F                     
Sbjct: 267 FSATLPKSLVEFARAGLQEPILIRLDAESKISPDLQNAFFTVKSSEKEGALLHVLHEVIK 326

Query: 224 ----------------TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
                            +++  K+  +     +   T  + IIF   K +V  L   L  
Sbjct: 327 IPTGETEALKRAKEEVKHSKKRKRSEVTSNSHKESPTEHSTIIFTATKHHVDYLTSILRT 386

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            GF+V   +G++DQ +R   + NF++G   ++V +D+AARG+DIP + +V N+D P++ +
Sbjct: 387 SGFAVSYAYGSLDQTARKIEVQNFRDGITHILVVTDVAARGIDIPILSNVINYDFPSQPK 446

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            ++HR+GRT RAG+ G +++L+ + D  ++  ++  + + +
Sbjct: 447 IFVHRVGRTARAGKTGWSYSLIRESDTPYLLDLQLFLGRPL 487


>gi|124267364|ref|YP_001021368.1| ATP-independent RNA helicase [Methylibium petroleiphilum PM1]
 gi|124260139|gb|ABM95133.1| ATP-independent RNA helicase [Methylibium petroleiphilum PM1]
          Length = 473

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 132/381 (34%), Positives = 202/381 (53%), Gaps = 10/381 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ L L+P V+  +   GY   TP+Q  T+P+ L   D+   A+TG+GKTA+F    L
Sbjct: 16  LPFSQLPLAPAVLANLEQLGYHSMTPVQAATLPIALAGRDLIAQAKTGSGKTAAFA---L 72

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
            +L +   R    ++L+L PTRELA QV     +  ++   T  L +  G     Q   L
Sbjct: 73  ALLARLDPRRLDVQSLVLCPTRELADQVTQELRRLARSQENTKILTLCGGATMRPQLASL 132

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + GA +++ TPGRI+DH  RG L + ++  LV+DEADRMLDMGF   I  +    P  RQ
Sbjct: 133 QHGAHIVVGTPGRIIDHLERGSLALASLNTLVLDEADRMLDMGFFDDIAAVARHCPPQRQ 192

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  D + ++S  F     R   +    + +         Y    ++      LL
Sbjct: 193 TLLFSATYPDGIARLSAQF----LRQPEHVRLESQQDAGKIRQRFYEVTEEQRLHAVGLL 248

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + + FCN K+   +L   L  QG    A+HG+++QR R ++L  F   +  ++
Sbjct: 249 LDHFRPASTLAFCNTKQQCRDLVAVLSAQGVQALALHGDLEQRERDQVLMQFANRSCSVL 308

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLD+  +  V N D+    E +IHRIGRTGRA + G A +L   +++  +  
Sbjct: 309 VATDVAARGLDVEQLEAVVNVDISPDPEVHIHRIGRTGRADQAGWALSLATLDEMPSVAK 368

Query: 360 IEKLIEKKVDWLNGDLSSLNP 380
           I++L +++ +W    LS L P
Sbjct: 369 IDQLQDRESEWHP--LSELTP 387


>gi|309813271|ref|ZP_07706987.1| DEAD/DEAH box helicase [Dermacoccus sp. Ellin185]
 gi|308432767|gb|EFP56683.1| DEAD/DEAH box helicase [Dermacoccus sp. Ellin185]
          Length = 906

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 135/361 (37%), Positives = 193/361 (53%), Gaps = 6/361 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59
           M F +LGL   +V  +   G  KP PIQ  TIP  +   DV G  +TG+GKT  F LPM 
Sbjct: 395 MTFTELGLPEALVERMARDGITKPFPIQAATIPDAMAGKDVLGRGRTGSGKTLGFGLPML 454

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + E G+AR   PR ++L PTRELA QV+D  +       L   L+ GG+P+E Q   L
Sbjct: 455 ARLAEGGKARAHQPRAIVLVPTRELAMQVSDALQPLVHVVGLKHKLVAGGMPYEPQLSAL 514

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERG DVLI TPGR+ D   RG   ++ +EI V+DEAD M +MGF+  I  I  LVP   Q
Sbjct: 515 ERGVDVLIATPGRLSDLIERGAADLSRVEIAVLDEADHMAEMGFLEAITEILDLVPEGGQ 574

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT+   +  V + +L +P     +  ++T  T+EH  +    +  K         
Sbjct: 575 RLLFSATLDRGIDSVVDKYLVDPVTHSTDDGTATVTTMEHHALLIEPRDKKVVTAEVA-- 632

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
              +     ++F   K     +   L +QG    A+HG ++Q  R ++LS FK+G + ++
Sbjct: 633 ---NREGRTVVFVRTKMGADRVAAELREQGVMAAALHGGLNQGQRNRVLSAFKDGRVPVL 689

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARG+ + +VG V   D P   ++Y+HR GRT RAG  G   TL      + +  
Sbjct: 690 VATDVAARGIHVDEVGVVLQVDPPADHKDYLHRAGRTARAGEKGTVITLALPHQRRSMQR 749

Query: 360 I 360
           +
Sbjct: 750 L 750


>gi|261204545|ref|XP_002629486.1| ATP-dependent RNA helicase DBP5 [Ajellomyces dermatitidis SLH14081]
 gi|239587271|gb|EEQ69914.1| ATP-dependent RNA helicase DBP5 [Ajellomyces dermatitidis SLH14081]
 gi|239614190|gb|EEQ91177.1| ATP-dependent RNA helicase DBP5 [Ajellomyces dermatitidis ER-3]
 gi|327353666|gb|EGE82523.1| ATP-dependent RNA helicase DBP5 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 497

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 98/385 (25%), Positives = 184/385 (47%), Gaps = 18/385 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +LGL P V+  +    + +P+ IQ K +PL+L     ++ G +Q+GTGKTA+FVL +
Sbjct: 90  SFEELGLHPSVLQGLHAMSFRRPSKIQEKALPLLLNNPPANMIGQSQSGTGKTAAFVLNI 149

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ L+        P+ L+L P+RELA Q+    +  G             +P E+   + 
Sbjct: 150 LSRLDLSPQMELAPQALVLAPSRELARQIVGVIQVMGSYVEKLKVATA--VPMESSRNQR 207

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                V+      +     R     +   +++ +  + +   G       +  L+P T Q
Sbjct: 208 VEAPVVVGTPGTVMDLIRKRLFNTQHLKVLVLDEADNMLDQQGLGDQCIRVKGLLPKTIQ 267

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT  D + + +  F  N  +I +     T E I+  ++   +   K   L++   
Sbjct: 268 VVLFSATFPDHVVRYANKFAPNANQITLKHEELTVEGIKQLYLDCDSDEHKFDILVK--F 325

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+ + IIF   + +   +   +  +G +V ++ G ++ + R +I+  F++G  +++
Sbjct: 326 YGLLTIGSSIIFVKTRASAAEIERRMVAEGHTVVSLTGGVEGQKRDEIIDKFRQGDAKVL 385

Query: 300 VASDLAARGLDIPDVGHVFNFDVPN-----------RAENYIHRIGRTGRAGRHGKAFTL 348
           + +++ ARG+D+  V  V N+D+P             A+ Y+HRIGRTGR GR G A + 
Sbjct: 386 ITTNVLARGIDVQTVSMVINYDIPELHAPKATKRIADAQTYLHRIGRTGRFGRVGVAVSF 445

Query: 349 V-AKEDIKHIDAIEKLIEKKVDWLN 372
           V +KE+ + +  I+     ++  +N
Sbjct: 446 VASKEEWQMLQDIKTYFNTEIQRVN 470


>gi|167388903|ref|XP_001738737.1| ATP-dependent RNA helicase SUB2 [Entamoeba dispar SAW760]
 gi|165897879|gb|EDR24925.1| ATP-dependent RNA helicase SUB2, putative [Entamoeba dispar SAW760]
          Length = 419

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 91/384 (23%), Positives = 178/384 (46%), Gaps = 7/384 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F ++GL  +++ ++ D G+  P+ +Q + IP  L R DV   A++G GKTA FVL +L
Sbjct: 33  VSFQEMGLKKEIMQSITDCGFEHPSEVQSQVIPKALLRQDVLCQAKSGMGKTAVFVLSIL 92

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY----NLTVALLIGGIPFEAQN 116
                    V                   D  +K           T + + G       +
Sbjct: 93  NQGLFLGDHVSAIVVCHTRELARQVQNEFDRMKKRLVESIGKDIQTASYIGGNPESNDVD 152

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
               R   +++ TPGR+    N G L ++ ++  VIDE D++L       I ++      
Sbjct: 153 DLKNRKPTIIVGTPGRLASLNNSGALDLSKLDTFVIDECDKILSSKSELDIMSLFMNSSK 212

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +Q ++FSAT++++ + +   +L+NP  + ++          H +        K+  L +
Sbjct: 213 NKQVMMFSATISEQNKALCRKYLKNPFEVFIDDGEKLFLHGLHLYSKKLQDMEKQEKLGE 272

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             +  +      IIF ++K+    +   L+K+ +    ++G +++  R +    F++G  
Sbjct: 273 --ILDEIDFNQAIIFADRKERCQAVVQRLKKEKYPCGILYGRMEEYLREREFERFRKGES 330

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIK 355
           +++V++DL  RG+DI  V  V NFD+ + ++ ++HR+GR GR G  G A + +  +ED K
Sbjct: 331 RILVSTDLCGRGIDIEKVNLVVNFDMASDSDQFLHRVGRAGRFGTKGVAISFIDTEEDEK 390

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLN 379
            +  ++     ++  L  DL  + 
Sbjct: 391 VLGEVQSRFAVQMKELPDDLKEIP 414


>gi|157863878|ref|XP_001687490.1| nucleolar RNA helicase II [Leishmania major strain Friedlin]
 gi|68223701|emb|CAJ01930.1| putative nucleolar RNA helicase II [Leishmania major strain
           Friedlin]
          Length = 674

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 111/384 (28%), Positives = 174/384 (45%), Gaps = 17/384 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  ++P VV A+   G     P+Q  T   +++  DV   A+TG+GKT +F +P++  
Sbjct: 88  FSEFEMNPIVVKALQSRGIESMFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVER 147

Query: 63  L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L        R R P  +I  PTRELA QV D          +T   L GG+ +  Q + L
Sbjct: 148 LLKLPSHLTRGRGPAAVIFCPTRELAIQVQDVLCGISCGLVVT--ALYGGVAYANQERVL 205

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-- 177
             G D+++ TPGR  D   +G L  + + +  +DEAD MLD+GF   I+ + S V     
Sbjct: 206 RSGVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNG 265

Query: 178 --------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                    QTLLFSAT+ + +   S           V   +    +    +        
Sbjct: 266 SVGAERPAHQTLLFSATVPEWVHTCSFIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSE 325

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
               L   +          ++F N KK+  +L  +  K         G++ Q  R   + 
Sbjct: 326 ISSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNTKLDSQCLH--GDMQQEQRESTMK 383

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
           +F++    +++A+D+AARGLD+P V  V     P+  + +IHR GRTGRAGR G    L 
Sbjct: 384 SFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLY 443

Query: 350 AKEDIKHIDAIEKLIEKKVDWLNG 373
              +   ++ IE+  + K D L  
Sbjct: 444 QPREEYVVERIERHAKMKFDVLPA 467


>gi|3335268|gb|AAC27384.1| RNA helicase [Caenorhabditis elegans]
          Length = 763

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 114/372 (30%), Positives = 175/372 (47%), Gaps = 21/372 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+  L+  +   V  AGY K TPIQ   +PLV Q +D+   AQTG+GKTA+F+LP++T
Sbjct: 342 TFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMT 401

Query: 62  ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
            L               PR +IL PTRELA Q+ +   K+     + +  + GG+     
Sbjct: 402 RLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYN 461

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-----LDMGFIPYIQNI 170
             ++E+GA +++ T GRI      G + ++     V+DEADRM             +   
Sbjct: 462 KGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYD 521

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
           +      RQTL+FSAT  D +Q+ +  FL+    +        A            +  K
Sbjct: 522 SMPRKENRQTLMFSATFPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFERCERSEK 581

Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK----------QGFSVCAIHGNID 280
           K  LL+ L    D+           K  +                         IHG  +
Sbjct: 582 KDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADILASILSSAQVPAITIHGARE 641

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           QR R + L  F+ G+  +++A+ +A RGLDI  V HV N+D+P+  ++YIHRIGRTGR G
Sbjct: 642 QRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVG 701

Query: 341 RHGKAFTLVAKE 352
             G+A + ++++
Sbjct: 702 NSGRATSFISED 713


>gi|19746579|ref|NP_607715.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS8232]
 gi|94994869|ref|YP_602967.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
 gi|139473299|ref|YP_001128014.1| ATP-dependent RNA helicase [Streptococcus pyogenes str. Manfredo]
 gi|19748794|gb|AAL98214.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS8232]
 gi|94548377|gb|ABF38423.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
 gi|134271545|emb|CAM29769.1| putative helicase [Streptococcus pyogenes str. Manfredo]
          Length = 447

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 118/366 (32%), Positives = 183/366 (50%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      V  A+ + G+V PT +Q + IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDYHFKQYVQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNK 117
             L++ +A V++    I  P+RELA Q+ D  ++  K+    + L              K
Sbjct: 61  EKLDEAKAEVQVV---ITAPSRELATQIFDACKQIAKHSQEEIRLANYVGGTDKLRQIEK 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++     V+DEAD  +DMGF+  +  I + +P +
Sbjct: 118 LKGSQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASLPKS 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVIEQIKTKTVIADTI---DNWLVSTKGRDKNGQLL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         ++F N K+   +L   L   G  V  IHG I  R R +I++  K+   +
Sbjct: 235 EILKTMQPYMAMLFVNTKERADDLHAFLTANGLKVAKIHGGIPPRERKRIMNQVKKLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 KELEKM 360


>gi|221127564|ref|XP_002156411.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
           [Hydra magnipapillata]
          Length = 552

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 121/472 (25%), Positives = 200/472 (42%), Gaps = 32/472 (6%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65
           + LS  ++ A+ + G+  PT IQ  TIP+ L   D+C  A TG+G        +L    +
Sbjct: 1   MNLSRPLLKAINELGFEHPTKIQSSTIPIALLGKDLCACATTGSGSHKGIKDFLLHECCE 60

Query: 66  GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI---------PFEAQN 116
              ++              A  +         + + ++A                   + 
Sbjct: 61  ASDQIHDAGKTTPNNNILEAMCMLVKSWDAVYSVSESLAKFSNIQLGLATGGLDSRSQEA 120

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
              +    V+      I    N     +  IEILV+DEADRML+  F   ++ I  L P 
Sbjct: 121 ILRKNPDVVIATPGRLIDHLHNTPSFNLQTIEILVLDEADRMLEEHFHDQMKEIIRLCPR 180

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQT+LFSATMTDE+  +    L NP ++ V+  +  A ++   FV   +        + 
Sbjct: 181 GRQTMLFSATMTDEVNALMSLSLNNPVKLFVDQNTDVASSLHQEFVRIRSTREADRLAVV 240

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L  +   +  ++F   K     L       G     +HGN+ Q  R++ L  FK   +
Sbjct: 241 VALCCRSFNQQTLVFLQTKVLAHKLRIIFGLFGLKAAELHGNLTQLQRLEALEKFKNNEV 300

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++VA+DLAARGLDI  V  V +F++P   ++YIHR+GRT RAG+ G++ TLV +++ K 
Sbjct: 301 DILVATDLAARGLDIVGVKTVISFNMPTTIKSYIHRVGRTARAGKAGRSITLVGEKERKM 360

Query: 357 IDAIEK--------------LIEK---KVDWLNGDLSSLNPPLE---KIDIAQHNHARKN 396
           +  + K              ++EK   K++    D+  +    E   ++ +A+    +  
Sbjct: 361 LKEVVKNAKIPVKNRILSTEVVEKYKNKLESFEKDIKEILKEEESAKQLRVAEMEMNKAK 420

Query: 397 NPIPQKSTGFDRRKKNY---SSQKSHIPLKESEKISKLQQDIQENDADSLGF 445
           N I        R  K +     Q S    KES+K  K   + ++       F
Sbjct: 421 NLIEHHDEIMSRPAKTFIKTQKQSSAKNKKESQKKVKNLTEEEKKIRREQMF 472


>gi|322493216|emb|CBZ28501.1| putative ATP-dependent RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 894

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 104/363 (28%), Positives = 176/363 (48%), Gaps = 4/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L +S +    +    Y   TPIQ  ++ L L   DV G A+TG+GKT  FV+P+L 
Sbjct: 76  KFTELPISQRTQMGLERGHYTILTPIQKGSLHLALAGFDVLGAAKTGSGKTLCFVIPVLE 135

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L +      M     +L PTRELA Q+    +  G  + L+ ALL GG   + + K+L 
Sbjct: 136 CLYREHWSSDMGVGALLLSPTRELALQIFKVMQLVGYKHVLSAALLTGGRDVQEERKRLH 195

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             + ++      +    +  +L+++N+++  +DEADR+LDMGF   I +I + +P  RQ+
Sbjct: 196 AISIIVGTPGRILHHLQDDAELVLDNMQLFCMDEADRLLDMGFREAITSILAYLPPQRQS 255

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT T ++Q +++  L+NP+ + +   ++    +  C      +  KK   L   L+
Sbjct: 256 LLFSATQTTDVQMLAQMSLKNPRYVSMQAITAAPTPMTLCQNFVVVELHKKLDALLMFLK 315

Query: 241 SQDTMKNGIIFCNQKK---NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                K  +      +     +     L+K       +   + Q  R ++   F      
Sbjct: 316 RHPNDKIVVFVSTCNQVKFMHLAFSKILKKMRIPSMCLTSKMKQFRREEVFLTFCRCKSA 375

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++  +D+A+RGLD P V  V  +D P+ A+ YIHR GRT RAG  G +   +   +   +
Sbjct: 376 VLFCTDVASRGLDFPLVHWVVQYDCPDSAQTYIHRAGRTARAGARGVSLLFLTPRETPML 435

Query: 358 DAI 360
             +
Sbjct: 436 SYL 438


>gi|29841421|gb|AAP06453.1| similar to NM_019693 HLA-B associated transcript 1 in Homo sapiens
           [Schistosoma japonicum]
          Length = 410

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 90/365 (24%), Positives = 160/365 (43%), Gaps = 4/365 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLT 61
           F D  L P+++ A++D G+  P+ +Q + IP  +   DV   A++G GKTA FV+  +  
Sbjct: 45  FRDFILKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVIATLQQ 104

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  +G A   +             ++  + F KY     + V      I  + +      
Sbjct: 105 LDPEGEANTSVLVLCHTRELAFQISKEYERFSKYMPKIKVGVFFGGMPIRKDIETLTKSP 164

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V+      +    ++   L +    ++ +    +  +     +Q I  + P  +Q +
Sbjct: 165 VHIVVGTPGRILDLVRSKTLKLQHVKHFIIDECDKMLDTLDMRRDVQEIFRMTPHQKQVM 224

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSATM+ E++ V  NF+Q+P  I +   S               +  K   L +     
Sbjct: 225 MFSATMSKEIRPVCRNFMQDPLEIFIENDSKLTLHGLRQHYVKVKENEKNRKLFEL--LD 282

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
           +      IIF    +  + L   L  Q F   A+H N+ Q  R++    FK    +L+VA
Sbjct: 283 ELQFNQVIIFVKSVQRCMALAQLLVDQNFPAIAMHRNMAQEERLERYQAFKNFQKRLLVA 342

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAI 360
           ++L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G  G A T ++ E D K ++ +
Sbjct: 343 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDEQDAKVLNEV 402

Query: 361 EKLIE 365
           +    
Sbjct: 403 QNRFR 407


>gi|30022365|ref|NP_833996.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|29897922|gb|AAP11197.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
          Length = 436

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 113/375 (30%), Positives = 198/375 (52%), Gaps = 6/375 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L 
Sbjct: 5   TFTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLN 64

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +   R  V+ +      E  +++  ++    +   ++  +T   LIGG   +   +KL+
Sbjct: 65  RINASREEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLK 124

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P   Q 
Sbjct: 125 KQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQM 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +     +    L   + 
Sbjct: 185 LVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKH---RNKIDLVHKML 241

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F N KK    +   L ++G  V  IHG++  R R K++   ++   Q +V
Sbjct: 242 LQFKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIV 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DLAARG+DI  + HV N+  P+  + ++HR+ RT RAG  G A T+    + + +D++
Sbjct: 302 ATDLAARGIDIQGISHVINYQPPSDLDFFVHRVARTARAGHSGIAVTIYDPANEEALDSL 361

Query: 361 EKLIEKKVDWLNGDL 375
           EK  ++ +++ + DL
Sbjct: 362 EK--QRHIEFKHVDL 374


>gi|320531823|ref|ZP_08032743.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135962|gb|EFW27990.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 449

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 125/390 (32%), Positives = 203/390 (52%), Gaps = 7/390 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+   +   +   G+  P PIQ  T+P  L   DV G  +TG+GKT +F LP++ 
Sbjct: 11  TFADLGVDSDLAADLDARGFTAPFPIQAATLPDTLAGRDVLGRGRTGSGKTLAFSLPLVQ 70

Query: 62  I-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              ++ +AR   P  L+L PTRELA Q+A+  E   +  ++ V  + GG+  + Q K L+
Sbjct: 71  RLAQQDKARPGHPIGLVLAPTRELALQIAEVIEPLARVVDMDVTTIFGGVSAKPQEKALK 130

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++  PGR+LD   +G + ++ +EI V+DEAD M D+GF+P ++ I    P   Q 
Sbjct: 131 AGVDVVVACPGRLLDLMGQGLVSLDEVEITVLDEADHMADLGFLPGVRRILRATPQRGQR 190

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ + +  + + FL NP +  V+  +S  + + H       + +K   + +    
Sbjct: 191 LLFSATLDNGVDTLVKEFLHNPLQHSVDPSTSPVDAMTHRVWMVADKTAKDGIVRRL--- 247

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K     L   L + G     + GN+ Q++R + +  F  G + +MV
Sbjct: 248 -ASGEGQRILFTRTKHLARRLARKLVQAGIPAVELQGNMSQKARERAMRAFSTGQVHVMV 306

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V  V + D P   + Y+HR GRT RAG  G   TLV  E    +  +
Sbjct: 307 ATDIAARGIDVSGVELVVHVDPPAEHKAYLHRSGRTARAGAAGSVITLVLPEQKHDVQVL 366

Query: 361 EK--LIEKKVDWLNGDLSSLNPPLEKIDIA 388
            K   I   ++ +  D  +++  + ++  A
Sbjct: 367 LKKARIRADIERIRPDDDAVSALVGQVAEA 396


>gi|294140317|ref|YP_003556295.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293326786|dbj|BAJ01517.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 431

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 134/389 (34%), Positives = 213/389 (54%), Gaps = 12/389 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  LGL P+++  +    Y+ PT +Q K IP VL   D+   A TG+GKTA+F LPML 
Sbjct: 14  TFEQLGLIPELLKRLTLLEYLNPTLVQGKAIPAVLLGRDLLAGAITGSGKTAAFALPMLQ 73

Query: 62  ILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG--IPFEAQN 116
            L K  A+V        L+L PTRELA QVAD+F+ YG+     + +      +    Q 
Sbjct: 74  KLAKSSAKVSKGNQVCGLVLVPTRELAQQVADSFKSYGQLIKPRLKIEAVFGGVSANTQM 133

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             +  GADVL+ TPGR+LD  +   + +++++ LV+DEADRML +GF   +  + +L+P 
Sbjct: 134 LAMRGGADVLVATPGRLLDLISSNAIKLDDVKTLVLDEADRMLSLGFTEELNQVLALLPK 193

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +QTLLFSAT  +E++ +++  L +P  I++ +     E         Y     +   L 
Sbjct: 194 HKQTLLFSATFPEEVKTLTDKLLSSPVEIQIQS-----EEQSTLKQQVYTVNRTRKTALL 248

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L  ++  +  ++F + K     L   L K G +    H +  Q +R K+L  FK G  
Sbjct: 249 AHLIKENNWRQVLVFASAKNTCNRLEQKLAKAGIAAQIFHSDKSQGARTKVLEAFKNGET 308

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARG+DI  +  V N+++P    +Y+HRIGR+GRAG  G A +L++ ++ +H
Sbjct: 309 HVLIATDIAARGIDIEKLPVVINYELPRSPVDYMHRIGRSGRAGEAGLALSLISHDEYQH 368

Query: 357 IDAIEKLIEKKVDW--LNGDLSSLNPPLE 383
              IEK  + K+D   + G  +    PL+
Sbjct: 369 FKLIEKKNKIKLDREQVEGFEADDEAPLD 397


>gi|281207287|gb|EFA81470.1| DEAD/DEAH box helicase [Polysphondylium pallidum PN500]
          Length = 922

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 126/399 (31%), Positives = 198/399 (49%), Gaps = 25/399 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F ++ L   ++  +   G  KPTPIQI+ IP++L   D+ GIA TG+GKT  F LPM+ 
Sbjct: 207 SFREMKLPHAIIDCLKKKGIKKPTPIQIQGIPVILSGRDMIGIAFTGSGKTLVFTLPMVL 266

Query: 62  ILEKGRARVR-----MPRTLILEPTRELAAQVADNFEKY-------GKNYNLTVALLIGG 109
              +   ++       P  LI+ P+RELA Q  D   +        G    L   L +GG
Sbjct: 267 FAMEMELKLPLISGEGPFGLIICPSRELARQTYDGVVEMAGALSKAGGYPPLRTLLCMGG 326

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
           I F  Q  +L +G  +++ TPGR+LD  N+ K+ + + + L +DEADR++D+GF   I+ 
Sbjct: 327 IDFREQEPELRKGVHMIVATPGRLLDMLNKKKINLISCKYLGLDEADRLIDLGFEEEIRG 386

Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
           +       RQTLLFSATM  ++Q     F ++     V      A       +       
Sbjct: 387 VMDNFTAQRQTLLFSATMPKKIQN----FARSALVRPVEVNVGRAGAANLDVIQEVEYVK 442

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289
           ++  ++  L   Q T    +IFC  KK+V ++   L  +     ++HG+  Q  R   + 
Sbjct: 443 QEAKIVYLLECLQKTPPPVLIFCENKKDVDDIYEYLLLKQVEAVSLHGDKTQEERDIAIK 502

Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
            FKEG   +++A+D+A++GLD PD+ HV NFD+P   ENYIHRIGRTGR           
Sbjct: 503 MFKEGKKDVLIATDVASKGLDFPDIQHVINFDMPKEIENYIHRIGRTGRC----VCIICY 558

Query: 350 AKEDIKHIDAIE----KLIEKKVDWLNGDLSSLNPPLEK 384
               I   + I+    +  +++ +    +  SL    ++
Sbjct: 559 TMRMIPR-EHIQEDSKRHQQQQFEAYQEEFPSLEESSQR 596


>gi|56758884|gb|AAW27582.1| SJCHGC09528 protein [Schistosoma japonicum]
          Length = 454

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/453 (15%), Positives = 145/453 (32%), Gaps = 27/453 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F +LG+ P++V  + D G   PT +Q   IP++L+ +DV   A+TG+GKTA+F++P+L
Sbjct: 1   MSFGELGVCPEIVELLRDKGISAPTEVQKGCIPVILEGNDVVACAKTGSGKTAAFLIPIL 60

Query: 61  TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L      +     T   E   ++  Q A      G+     + +  G           
Sbjct: 61  QSLMTELKPLYALIITPTRELAHQIGEQAAGLNLIQGEPLCNVLVITGGRSIIHQSIDLA 120

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++            +      N+         R   +      + +         
Sbjct: 121 RSPHIIVSTPGRLADLLRTQIAAQEANVTDKQEWTLSRTKVVVLDEADRLLEDNFGKDLT 180

Query: 180 TLLFSATMTDE--------LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231
            ++ +     +        + +   +                             +    
Sbjct: 181 IIMKALPKRRQTLLLVALSVMQSGSSLEAAKSAACTENRRLLFYWHLSVDYMPICRGRNS 240

Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                 L  +    K   +     + +    HSL     + C     I        + + 
Sbjct: 241 RNFKSVLHSNAPEHKEAFLVHTVDQFLSENPHSLIMIFTNKCKWCHLIGLMMTTLGIKST 300

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY------------------IHRI 333
              +         +        +  +   D+ +R  ++                  +HR+
Sbjct: 301 LLHSAMTQKNRISSLTLFRSSQIRVLIATDLASRGLDFPTVDIVINHNVPIRPKDYVHRV 360

Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393
           GRT RAG+ G A TL    ++K + AI+  I K++   + +   +   + ++ IA+ +  
Sbjct: 361 GRTARAGKAGLALTLCDLFEVKRLKAIQTFINKELKIFDVNEKKVAQIIAEVSIARRDAE 420

Query: 394 RKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESE 426
           RK + I         + KN    +    L+++E
Sbjct: 421 RKLDEIRFDEKREINKAKNLIKARGLKALEKTE 453


>gi|212544462|ref|XP_002152385.1| DEAD/DEAH box RNA helicase, putative [Penicillium marneffei ATCC
           18224]
 gi|210065354|gb|EEA19448.1| DEAD/DEAH box RNA helicase, putative [Penicillium marneffei ATCC
           18224]
          Length = 593

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 105/408 (25%), Positives = 166/408 (40%), Gaps = 27/408 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FAD GL P +   V   GY  PTPIQ   IP +L+  D+  +AQTG+GKTA++++P+L+ 
Sbjct: 131 FADAGLHPIMEKNVRLCGYTIPTPIQAYGIPAILEGRDLLAVAQTGSGKTAAYLVPILSK 190

Query: 63  LEKGRARVRMPRTLILE-------------------PTRELAAQVADNFEKYGKNYNLTV 103
           L     ++  PR  I E                   PTRELA Q+ D   +         
Sbjct: 191 LMGKAKKLAAPRPNITEGFEPKVHAVRAEPLVLVIVPTRELACQIFDEARRLCYRSMFRP 250

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163
            +  GG P   Q  +L++G D+LI TPGR++D   +  +L        + +    L    
Sbjct: 251 CVAYGGGPVSHQRMELQKGCDILIGTPGRLIDFMGQPHVLSLRRVRYTVIDEADELLNYD 310

Query: 164 IPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223
                        + +       M       +   +                        
Sbjct: 311 WETEFTQLLSGGDSNEDADHRYMMFSATFNKTCRQVAKKYLEHGYVRIRVGRLGSSHANI 370

Query: 224 TYAQYSKKCALLQQLLQS---QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280
               Y    ++ +Q L            +IF N K     L   L  +G    +IH +  
Sbjct: 371 EQRVYYADDSVKEQCLYDLLLSMPPARTLIFVNTKAQADRLDDFLYNRGLPSTSIHSDRT 430

Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNR----AENYIHRIGRT 336
           QR R   +S F+ G   +++A+ +++RGLDI +V HV NFD+P+      + Y+HRIGRT
Sbjct: 431 QREREDAMSAFRSGKTPILIATGVSSRGLDIKNVMHVINFDLPSSDQGGIDEYVHRIGRT 490

Query: 337 GRAGRHGKAFTLVAKE-DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383
            R G  G A +L   + +      + K++ +    +   L  + P  E
Sbjct: 491 ARIGNEGIATSLYNHDRNTDIAQNLVKVLLENKQPIPDFLEDMKPEGE 538


>gi|309360124|emb|CAP31481.2| hypothetical protein CBG_12508 [Caenorhabditis briggsae AF16]
          Length = 589

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 101/446 (22%), Positives = 183/446 (41%), Gaps = 27/446 (6%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTG------------ 48
           + F D  LSP ++  + +    +P+PIQ++ IP ++ R ++   A TG            
Sbjct: 125 LRFNDSSLSPSLLTHLSENDIRQPSPIQMQAIPFMMGRKNILASAPTGLCLSERATVSFF 184

Query: 49  ----TGKTASFVLPMLTILEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNY 99
               +GKT +F LP++  +   + R    ++     ++LEPTRELAAQ    F KY    
Sbjct: 185 NFEGSGKTLAFALPVIDEILGLKRRADYSKSSKLLAIVLEPTRELAAQTYTEFVKYCSGT 244

Query: 100 NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159
           +++VA   G          L                  +  + L+ +    + +  +   
Sbjct: 245 SISVANFSGEETDITHADILVSTP--NRIVFHLDKIDTSLLRWLVVDESDRLFEVIEGQE 302

Query: 160 DMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
                       +      +   FSAT + E++K  ++ ++N   + V   +S+  +++ 
Sbjct: 303 KCFRNQLGAIYKACDAKCTRVAFFSATFSHEVEKWCKDNIENIGMVCVGERNSSNTSVKQ 362

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                  +  KK A+   L  +        +    +   +    S       V +I+   
Sbjct: 363 ELTYCGTEDGKKVAIRNLLRTAFRPPALVFVQSKDRAVQLVKLLSAIDSNLKVDSINSGK 422

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
             + R   +  F+ G I ++V ++L  RGLD+ DVG V N+D+P    +YIHR+GRTGRA
Sbjct: 423 SDKERDDTMERFRNGEIWVLVCTELLGRGLDLSDVGLVINYDLPTSIISYIHRVGRTGRA 482

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399
           G+ G A T     D+K+I +I  +I +       D+      ++K+   +     K  P 
Sbjct: 483 GKTGHAVTYFTDTDMKYIKSIATVIRQS----GFDVPEYLMEMKKVSRDRKKEMLKRAPK 538

Query: 400 PQKSTGFDRRKKNYSSQKSHIPLKES 425
            QK      + +     K+    KE 
Sbjct: 539 RQKIATVIEQVRKQKMAKAAYEKKEK 564


>gi|189201972|ref|XP_001937322.1| ATP-dependent RNA helicase DED1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187984421|gb|EDU49909.1| ATP-dependent RNA helicase DED1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 611

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 117/396 (29%), Positives = 184/396 (46%), Gaps = 30/396 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D GL P ++  V    Y  PTPIQ   IP VL  +DV  IAQTG+GKTA+F++P+L+
Sbjct: 120 NFEDAGLHPVMLENVKLCQYAYPTPIQAYCIPAVLTGNDVVAIAQTGSGKTAAFLVPILS 179

Query: 62  ILEKGRARVRMPRTL------------------ILEPTRELAAQVADNFEKYGKNYNLTV 103
            L     ++  PR                    ++ PTRELA Q  D   +      +  
Sbjct: 180 KLMGKARQLAAPRPNPIHYNPLTDKVRAEPLVLVICPTRELACQTFDEARRLCYRTMMRP 239

Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMG 162
            ++ GG P + Q ++LE G D+LI TPGR++D       L    ++  VIDEAD +L   
Sbjct: 240 CVVYGGAPSKNQREQLELGCDILIATPGRLMDFAQNANLLSFRRLKFTVIDEADELLSSD 299

Query: 163 FIPYIQNITS----LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218
           +   ++ I              L+FSAT     ++V++ ++ +           +     
Sbjct: 300 WEDVMEKIFQGGDTNTDADHTYLMFSATFPKAARRVAKEYMADDFFRIKVGRVGSTHENI 359

Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278
              +    + +K  AL        +  +  ++F N K     +   L  +G  V +IH +
Sbjct: 360 KQQIIWAEENAKNQALFDL--IFSEGPQRTLVFTNSKAKCDMVDDFLYNKGLPVTSIHSD 417

Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNR----AENYIHRIG 334
             QR R   L +F+     ++VA+ + ARGLD+ ++ HV N+D+P+        YIHRIG
Sbjct: 418 RTQREREDALRSFRTARCPILVATGVTARGLDVANIKHVINYDLPSTMHEGITEYIHRIG 477

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEK-LIEKKVD 369
           RT R G  GKA +     +    + + K L+E K D
Sbjct: 478 RTARIGNEGKATSFFNDRNDDIGEDLTKILLESKQD 513


>gi|23010493|ref|ZP_00051162.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 407

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 186/401 (46%), Positives = 254/401 (63%), Gaps = 31/401 (7%)

Query: 91  NFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEIL 150
           NFE+YG N+ L VAL+IGG+ F  Q+ KL RG DVLI TPGR+LDHF RGKLL+  +E+L
Sbjct: 5   NFERYGTNHKLNVALIIGGVSFADQDAKLTRGTDVLIATPGRLLDHFERGKLLLTGVELL 64

Query: 151 VIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210
           VIDEADRMLDMGFIP I+ I  +VPFTRQTL FSATM  E++++++ FL NP+R+EV  P
Sbjct: 65  VIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFSATMPPEIERLADMFLHNPQRVEVARP 124

Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270
           SSTA TIE   VAT A+  +K  +L+ L++S + ++NGIIFCN+K++V  L  SL   GF
Sbjct: 125 SSTATTIEQRLVATGAEGHEKRKVLRHLIRSANELQNGIIFCNRKRDVAQLQRSLTSHGF 184

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330
           +  A+HG++DQR+RM  L  F+ G   L+VASD+AARGLDIP V HVFNFDVP+  E+Y+
Sbjct: 185 NAAALHGDMDQRARMAALDGFRSGETPLLVASDVAARGLDIPAVSHVFNFDVPHHPEDYV 244

Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE------- 383
           HRIGRTGRAGR G AFTL ++ D + + AIE LI + + WL GDLS+L   +E       
Sbjct: 245 HRIGRTGRAGRAGHAFTLASRADERSLAAIESLIGRPIAWLEGDLSTLPTDVEGDEPRRR 304

Query: 384 -------KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQ--- 433
                  + +       +K    P ++     R+      ++    +E+E +S +++   
Sbjct: 305 RGGRRVKETEKGSDKAVQKTAERPSETRSRGPRRPAPERGRTDDVRREAEPVSPVREASR 364

Query: 434 -------------DIQENDADSLGFRGNMPAFML-PKNRGK 460
                           E D   +G   ++PAF+L P    K
Sbjct: 365 SAPERSRSERRPPRRDEEDETPVGLGSHVPAFLLKPTGIRK 405


>gi|156377720|ref|XP_001630794.1| predicted protein [Nematostella vectensis]
 gi|156217822|gb|EDO38731.1| predicted protein [Nematostella vectensis]
          Length = 495

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 117/393 (29%), Positives = 200/393 (50%), Gaps = 13/393 (3%)

Query: 3   FADL--GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           F+ L   +S K +  + D G+   T IQ K+I  +L+  D+ G A+TG+GKT +F++P++
Sbjct: 1   FSALSEDVSEKTLQGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPVV 60

Query: 61  TILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +L K + + R     +I+ PTREL+ Q         K++N T  +++GG+  +A+ ++L
Sbjct: 61  ELLYKLQFKTRNGTGVIIISPTRELSLQTYGVARDLLKHHNFTYGIIMGGVNRKAEAERL 120

Query: 120 ERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           ++G ++LI TPGR +    N    L  N++ LVIDEADR+L++GF   ++ I  ++P  R
Sbjct: 121 QKGVNLLIATPGRLLDHLQNTQGFLYKNLQCLVIDEADRILEIGFEEEMRQIIRILPSKR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT T  ++ +++  L+               T+E          S+K  L+   
Sbjct: 181 QTVLFSATQTKNVEDLAKLSLKRSPLYVGVDDHKETSTVEGLEQGYIVVPSEKRFLVLFT 240

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              ++  K  ++F +   +V      L      V  IHG   Q+ R      F      +
Sbjct: 241 FLKKNRSKKVMVFFSSCNSVKYHSELLNYIDLPVLEIHGKQKQQKRTTTFFEFCNAKSGI 300

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKHI 357
           ++ +D+AARGLDIP+V  +  +D  +  + YIHR+GRT R     G A   +  E++  +
Sbjct: 301 LLCTDVAARGLDIPEVDWIVQYDPADDPKEYIHRVGRTARGTEGKGHALLFLLPEELAFL 360

Query: 358 DAIEKLIEKKVDWLNGDLSS-----LNPPLEKI 385
             ++     KV     D SS     +   LE++
Sbjct: 361 RYLKHA---KVPLNEYDFSSSKILNIQSQLERL 390


>gi|254224718|ref|ZP_04918334.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae V51]
 gi|125622781|gb|EAZ51099.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae V51]
          Length = 428

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 131/417 (31%), Positives = 208/417 (49%), Gaps = 19/417 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A+  A   +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 23  MSFSSLALSADLIQALPKA-ITQPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++     G    L    L GG+    Q   L 
Sbjct: 82  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALA 137

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G  L     + V+DEADR+LDMGF P +Q + S     RQT
Sbjct: 138 ENPNILVATTGRLFDLTQSGLRLNRVTTL-VLDEADRLLDMGFWPQVQALASQTAGVRQT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++            +  +      
Sbjct: 197 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 256

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F   K+N  +L   L K G     +HG+  Q  R   L+ FK GT Q+++
Sbjct: 257 QWP---QVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQAQRETALAEFKNGTTQVLI 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+HG A +LV   ++  ++AI
Sbjct: 314 ATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNAI 373

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             L ++++   N         LE   +       ++   P+     +RR +N  S K
Sbjct: 374 RTLTQRELPVQN---------LEGFPVTDQPSTGESKRAPRDKQA-NRRTQNKKSVK 420


>gi|67467036|ref|XP_649638.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56466118|gb|EAL44250.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 419

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 90/384 (23%), Positives = 177/384 (46%), Gaps = 7/384 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F ++GL  +++ ++ D G+  P+ +Q + IP  L R D+   A++G GKTA FVL +L
Sbjct: 33  VSFQEMGLKKEIMQSITDCGFEHPSEVQSQVIPKALLRQDILCQAKSGMGKTAVFVLSIL 92

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY----NLTVALLIGGIPFEAQN 116
                    V                   D  +K           T + + G       +
Sbjct: 93  NQGLFLGDHVSAIVICHTRELARQVQNEFDRMKKRLVESIGKDIQTASYIGGNPESNDVD 152

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
               R   +++ TPGR+    N G L ++ ++  VIDE D++L       I ++      
Sbjct: 153 DLKNRKPTIIVGTPGRLASLNNSGALDLSKLDTFVIDECDKILSSKSELDIMSLFMSSSK 212

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +Q ++FSAT++++ + +   +L+NP  + ++          H +        K+  L +
Sbjct: 213 NKQVMMFSATISEQNKALCRKYLKNPFEVFIDDGEKLFLHGLHLYSKKLQDMEKQDKLGE 272

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             +  +      IIF ++K+    +   L+K+ +    ++G +++  R +    F++G  
Sbjct: 273 --ILDEIDFNQAIIFADRKERCQAIVQRLKKEKYPCGILYGRMEEYLREREFERFRKGES 330

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIK 355
           +++V++DL  RG+DI  V  V NFD+   ++ ++HR+GR GR G  G A + +  +ED K
Sbjct: 331 RILVSTDLCGRGIDIEKVNLVVNFDMALDSDQFLHRVGRAGRFGTKGVAISFIDTEEDEK 390

Query: 356 HIDAIEKLIEKKVDWLNGDLSSLN 379
            +  ++     ++  L  DL  + 
Sbjct: 391 VLKEVQSRFAVQMKELPDDLKEIP 414


>gi|291236621|ref|XP_002738237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 21-like
           [Saccoglossus kowalevskii]
          Length = 700

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 107/372 (28%), Positives = 173/372 (46%), Gaps = 8/372 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  LSP+ + ++         PIQ KT   V   HDV   A+TGTGKT +F LP++  
Sbjct: 120 FSNFRLSPQTIASLKARSITHLFPIQAKTFDYVYDGHDVIAQARTGTGKTLAFALPLVEK 179

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +   P   +L            + +    N  L+   + GG  +  Q   + RG
Sbjct: 180 LKNTEFKAGRPPQ-VLVMAPTRELAKQVSEDFQASNPRLSTLCVYGGTAYWPQESAIRRG 238

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            DVL+ TPGRILD+  +  L ++ ++ +++DE DRMLDMGF   ++ I S          
Sbjct: 239 VDVLVGTPGRILDYVQKNTLNLSQLKHVILDEVDRMLDMGFADTVEEILSASYKMDNPGE 298

Query: 183 ------FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
                 FSAT+ + + + ++ ++++  +          +T           + ++ A   
Sbjct: 299 NPQTLLFSATLPEWVYRTAKKYMKSEIKRVDLIGQQKLKTATTVEHLAIRCHYRQRAATI 358

Query: 237 QLLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
             +    + K+G  +   + K   N           V  +HG+I Q  R   L  F++G 
Sbjct: 359 SDVVQVYSGKHGRCMIFTETKKDANEMGLSSSIRQDVQVLHGDIAQNQREITLKGFRDGK 418

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
            + +VA+D+AARGLDIP+V  +   + P  AENYIHR GRTGRAGR G +       +  
Sbjct: 419 FRCLVATDVAARGLDIPEVDLIVMCEPPKDAENYIHRSGRTGRAGRTGVSVCFYKPNEEH 478

Query: 356 HIDAIEKLIEKK 367
            +  IE+    K
Sbjct: 479 VLKLIERRAGIK 490


>gi|301757641|ref|XP_002914657.1| PREDICTED: probable ATP-dependent RNA helicase DDX59-like
           [Ailuropoda melanoleuca]
 gi|281351210|gb|EFB26794.1| hypothetical protein PANDA_002576 [Ailuropoda melanoleuca]
          Length = 620

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 115/404 (28%), Positives = 187/404 (46%), Gaps = 12/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF   G    +   +  +GY  PTPIQ++ IP+ L   D+   A TG+GKTA+F+LP+ 
Sbjct: 204 IDFEHCGFPEALNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPV- 262

Query: 61  TILEKGRARVRMPRTLILEPTRE-LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             + +     + P  LIL PTRE      +   E       +   LL+GG+P   Q  +L
Sbjct: 263 --ITRALCESKTPSALILTPTRELAIQIESQAKELMSGLPRMKTVLLVGGLPLPPQLYRL 320

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   V+I TPGR+LD   +  + +  ++I+V+DE D ML MGF   + +I   VP   Q
Sbjct: 321 RQHVKVIIATPGRLLDIIKQSSVELRGMKIVVVDEVDTMLKMGFQQQVLDILENVPNDCQ 380

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+L SAT+   +++++   L+NP RI     +    ++    +       KK        
Sbjct: 381 TILASATIPTSIEQLASQLLRNPVRIVTGEKNLPCSSVRQIILWVEEPAKKKKLFEILND 440

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +    +    +      +  G    +IH    Q  R  IL    EG  +++
Sbjct: 441 KKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDYEVV 500

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +  RGLD+  V  V NFD+P+  + Y+H++GR GR G+HG A T +     +    
Sbjct: 501 VSTGVLGRGLDLISVKLVVNFDMPSSMDEYVHQVGRVGRLGQHGTAITFINNNSKRLFWD 560

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           I K ++     L   L  LN P        H+  RK     +++
Sbjct: 561 IAKRVKPTGSILPPQL--LNSP------YLHDQKRKEQQKDKQT 596


>gi|326318063|ref|YP_004235735.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323374899|gb|ADX47168.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 615

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 197/413 (47%), Gaps = 48/413 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-----QRH--DVCGIAQTGTGKTASF 55
           F +LGL+P++V AV D GY +PT +Q + IPL +          D+   +QTG+GKTA+F
Sbjct: 54  FVELGLAPELVQAVADLGYTQPTGVQERAIPLAMGAGADAGKFIDLMVSSQTGSGKTAAF 113

Query: 56  VLPMLT---------------------------------------ILEKGRARVRMPRTL 76
           +LP+L                                               +   P  L
Sbjct: 114 LLPVLHTLIGQQAAAQATARAEYEAAAAEALARGETAPKRAKRKDPTNPRHFKAATPGAL 173

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           IL PTRELA QVA +  +  ++        + G           + AD+++ TPGR+LD 
Sbjct: 174 ILCPTRELAQQVAHDAIELVRHCRGLRVANVVGGIPYQLQIAKLQNADLVVATPGRLLDL 233

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
               ++ ++ ++ LV+DEADRMLD+GF   +  I  L    +QT++FSAT    +Q+++ 
Sbjct: 234 QRSMQIKLDQVQFLVVDEADRMLDLGFSDDLAEINELTSQRKQTMMFSATFAPRIQQLAM 293

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--QLLQSQDTMKNGIIFCNQ 254
             + +           + +        T           +         T+   I+F + 
Sbjct: 294 RVMHDGGASVKKVQIDSPQEKHANIKQTLFWADNAQHKRKLLDHWLRDTTINQAIVFAST 353

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           +     L + L+++GFS  A+HG + Q  R + L   + G +Q++VA+D+AARG+D+P +
Sbjct: 354 QVECDGLANDLQQEGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPTI 413

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
            HVFNF +P +AE+Y HRIGRTGRAGR G A T     D + I  IE    ++
Sbjct: 414 THVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIEGYSRQQ 466


>gi|118088913|ref|XP_426195.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 445

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 128/341 (37%), Positives = 192/341 (56%), Gaps = 8/341 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F      P ++  +   G+ KPTPIQ +  P++LQ  D+ GIAQTGTGKT ++++P    
Sbjct: 110 FEQY---PDIMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIH 166

Query: 63  ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                  + +   P  L+L PTRELA QV     KY      ++ +  GG   +AQ   +
Sbjct: 167 LASQPIPKDKRGGPGMLVLAPTRELALQVEAECLKYTYKGFKSICIY-GGGDRKAQINVV 225

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +G D++I TPGR+ D      + + +I  LV+DEADRMLDMGF P I  I   V   RQ
Sbjct: 226 TKGVDIVIATPGRLNDLQMNNFINLKSITYLVLDEADRMLDMGFEPQIMKILIDVRPDRQ 285

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T++ SAT  D ++++++++L+NP  + V T    A       V    +  KK   ++  +
Sbjct: 286 TVMMSATWPDGVRRLAKSYLRNPMIVYVGTLDLAAVNTVEQKVIVINEEEKKA-FMENFI 344

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
            S       IIF  +K    ++   L  QG  V ++HG+ +Q  R + L +FK+G ++++
Sbjct: 345 DSMKPKDKAIIFVGKKSTADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRIL 404

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340
           VA+DLA+RGLD+ D+ HVFNFD P   E Y+HR+GRTGRAG
Sbjct: 405 VATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAG 445


>gi|148233734|ref|NP_001085314.1| eukaryotic translation initiation factor 4A1 [Xenopus laevis]
 gi|46329822|gb|AAH68800.1| LOC443739 protein [Xenopus laevis]
 gi|76780122|gb|AAI06280.1| LOC443739 protein [Xenopus laevis]
          Length = 406

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 198/378 (52%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 33  SFDDMSLSESLLRGIYAYGFEKPSAIQQRAIMPCIKGYDVIAQAQSGTGKTATFAISILQ 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E      +    L+L PTRELA Q+       G          IGG    A+ +K   
Sbjct: 93  QIELDMKATQA---LVLAPTRELAQQIQKVVMALGDYMGAGCHACIGGTNVRAEVQKLQS 149

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q 
Sbjct: 150 EAPHIVVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLSSNAQV 209

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L      
Sbjct: 210 VLLSATMPADVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL--Y 267

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 268 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLI 327

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V ++D + +  I
Sbjct: 328 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEDDKRTLKDI 387

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      V+ +  +++ L
Sbjct: 388 ETFYNTTVEEMPMNVADL 405


>gi|169777553|ref|XP_001823242.1| ATP-dependent RNA helicase dbp5 [Aspergillus oryzae RIB40]
 gi|91206547|sp|Q2U8K6|DBP5_ASPOR RecName: Full=ATP-dependent RNA helicase dbp5
 gi|83771979|dbj|BAE62109.1| unnamed protein product [Aspergillus oryzae]
          Length = 487

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 93/412 (22%), Positives = 182/412 (44%), Gaps = 22/412 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVL-P 58
            F DLGL P+++  +    + KP+ IQ + +PL+L     ++ G +Q+GTGKTA+FVL  
Sbjct: 79  SFEDLGLDPRILQGLSAMNFRKPSKIQERALPLLLNNPPKNLVGQSQSGTGKTAAFVLNA 138

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  +        + P+ LIL PTRELA Q+    +  G+  +             +    
Sbjct: 139 LSRLDLSTEQAQKTPQALILAPTRELARQIVGVIQCMGQFLDGLNVSTAVPADTNS-RHS 197

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
               + V+      +     R  +      +++ +  + +   G       + +L+P   
Sbjct: 198 KIESSVVVGTPGTVMDMIRKRVMVANKLKVLVLDEADNMLDQQGLGDQCIRVKALLPKDI 257

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT    + + +  F      + +     T E I+  ++    +  K   L+Q  
Sbjct: 258 QVVLFSATFPTHVHQYASKFAPQANELTLQHEELTVEGIKQLYLDCSDEEDKYKTLVQL- 316

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                T+ + IIF   + +   +   +  +G +V ++ G I+   R  ++  F+ G  ++
Sbjct: 317 -YGLLTVASSIIFVKTRASAAEIEKRMVAEGHTVASLTGGIEGSQRDAVIDQFRAGQAKV 375

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPN-----------RAENYIHRIGRTGRAGRHGKAFT 347
           ++ +++ ARG+D+  V  V N+D+P              + Y+HRIGRTGR GR G + +
Sbjct: 376 LITTNVLARGIDVSTVSMVINYDIPELHQPGAPERQADFQTYLHRIGRTGRFGRVGVSIS 435

Query: 348 LVA-KEDIKHIDAIEKLIEKKVDWLN----GDLSSLNPPLEKIDIAQHNHAR 394
            V+ +E+   ++ I++     +  ++     ++  +     K   AQ    R
Sbjct: 436 FVSNREEWNMLNQIQQYFNCTIQRVDTKDWDEVEDIIKKTIKNTRAQAQFGR 487


>gi|50554453|ref|XP_504635.1| YALI0E31427p [Yarrowia lipolytica]
 gi|74633162|sp|Q6C3X7|DBP5_YARLI RecName: Full=ATP-dependent RNA helicase DBP5
 gi|49650504|emb|CAG80239.1| YALI0E31427p [Yarrowia lipolytica]
          Length = 488

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 104/392 (26%), Positives = 195/392 (49%), Gaps = 19/392 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPML 60
           F DLGL   ++  +    + KP+ IQ K +PL+L    H++ G +Q+GTGKT +F L ML
Sbjct: 101 FEDLGLDENLLKGLYAMKFNKPSKIQEKALPLLLSDPPHNMIGQSQSGTGKTGAFSLTML 160

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           + ++     V+      L P+RELA Q  D  ++  K  ++T  L++      +  +  +
Sbjct: 161 SRVDPNLKAVQCIC---LAPSRELARQTLDVVDEMKKFTDITTHLIVPE----STERGQK 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             + +L+ TPG +     + ++   ++++ V+DEAD M+D         I   +P + Q 
Sbjct: 214 VTSQILVGTPGSVAGLLQKKQIDAKHVKVFVLDEADNMVDSSMGSTCARIKKYLPSSTQV 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT  + +  ++     NP  I +       + I   ++       K    + + L 
Sbjct: 274 VLFSATFPESVLDLAGKMCPNPNEIRLKANELNVDAITQLYMDCEDGEEK--FKMLEELY 331

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S  T+ + +IF  Q+     L   + K G  V  +H ++    R +++ +F+ G  ++++
Sbjct: 332 SMLTIASSVIFVAQRSTANALYQRMSKNGHKVSLLHSDLSVDERDRLMDDFRFGRSKVLI 391

Query: 301 ASDLAARGLDIPDVGHVFNFDVPN------RAENYIHRIGRTGRAGRHGKAFTLVAKE-D 353
           ++++ ARG+DI  V  V N+D+P         E Y+HRIGRTGR GR G + + V  E  
Sbjct: 392 STNVIARGIDIATVSMVVNYDLPTDKNGKPDPETYLHRIGRTGRFGRSGVSISFVHDEAS 451

Query: 354 IKHIDAIEKLIEKKVDWLN-GDLSSLNPPLEK 384
            + +D+I++ +   +  +   D+  +   ++K
Sbjct: 452 FEVLDSIQQSLGMTLTQVPTDDIDEVEEIIKK 483


>gi|160358710|sp|A6ZXP4|SUB2_YEAS7 RecName: Full=ATP-dependent RNA helicase SUB2; AltName:
           Full=Suppressor of BRR1 protein 2
 gi|151941918|gb|EDN60274.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
 gi|190405090|gb|EDV08357.1| ATP-dependent RNA helicase SUB2 [Saccharomyces cerevisiae RM11-1a]
 gi|207346988|gb|EDZ73314.1| YDL084Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256274096|gb|EEU09007.1| Sub2p [Saccharomyces cerevisiae JAY291]
 gi|323305707|gb|EGA59447.1| Sub2p [Saccharomyces cerevisiae FostersB]
 gi|323309539|gb|EGA62749.1| Sub2p [Saccharomyces cerevisiae FostersO]
 gi|323334342|gb|EGA75723.1| Sub2p [Saccharomyces cerevisiae AWRI796]
 gi|323349458|gb|EGA83682.1| Sub2p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323355848|gb|EGA87661.1| Sub2p [Saccharomyces cerevisiae VL3]
          Length = 446

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 91/375 (24%), Positives = 154/375 (41%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P++  A++D G+  P+ +Q  TIP  +   DV   A++G GKTA FVL  L  
Sbjct: 64  FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 123

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ--NKKLE 120
           L+     V +                   F KY  +    V      I  +A+    K  
Sbjct: 124 LDPVPGEVAVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDT 183

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+            +   L +    ++ +    + ++     +Q I    P  +Q 
Sbjct: 184 APHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRDKQV 243

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ E++ +   FLQNP  I V+  +         +     +  K        L 
Sbjct: 244 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNR--KLAQLL 301

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF         L   L    F    +HG++ Q  R+     FK+   ++ V
Sbjct: 302 DDLEFNQVIIFVKSTTRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICV 361

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           ++D+  RG+DI  +    N+D+ N A+ Y+HR+GR GR G  G A + V +KED + +  
Sbjct: 362 STDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDEEVLAK 421

Query: 360 IEKLIEKKVDWLNGD 374
           I++  + K+     +
Sbjct: 422 IQERFDVKIAEFPEE 436


>gi|147672130|ref|YP_001215089.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O395]
 gi|146314513|gb|ABQ19053.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
 gi|227015635|gb|ACP11844.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
          Length = 428

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 196/374 (52%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A+  A   +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 23  MSFSSLALSADLIQALPKA-ITEPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++   + G    L    L GG+    Q   L 
Sbjct: 82  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKTEQQNALA 137

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G  L     + V+DEADR+LDMGF P +Q + S     RQT
Sbjct: 138 ENPNILVATTGRLFDLTQSGLRLNRVTTL-VLDEADRLLDMGFWPQVQALASQTAGVRQT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++            +  +      
Sbjct: 197 VMCSATFSDDLKLKTQQLMRVPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 256

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK G+ Q+++
Sbjct: 257 QWP---QVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLI 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 314 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAI 373

Query: 361 EKLIEKKVDWLNGD 374
             L ++++   N D
Sbjct: 374 RTLTQRQLPVQNLD 387


>gi|262169246|ref|ZP_06036939.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|262022527|gb|EEY41235.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
          Length = 406

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 196/374 (52%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A+  A   +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 1   MSFSSLALSADLIQALPKA-ITEPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++   + G    L    L GG+    Q   L 
Sbjct: 60  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKTEQQNALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G  L     + V+DEADR+LDMGF P +Q + S     RQT
Sbjct: 116 ENPNILVATTGRLFDLTQSGLRLNRVTTL-VLDEADRLLDMGFWPQVQALASQTAGVRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++            +  +      
Sbjct: 175 VMCSATFSDDLKLKTQQLMRVPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK G+ Q+++
Sbjct: 235 QWP---QVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAI 351

Query: 361 EKLIEKKVDWLNGD 374
             L ++++   N D
Sbjct: 352 RTLTQRQLPVQNLD 365


>gi|6320119|ref|NP_010199.1| Sub2p [Saccharomyces cerevisiae S288c]
 gi|2500534|sp|Q07478|SUB2_YEAST RecName: Full=ATP-dependent RNA helicase SUB2; AltName:
           Full=Suppressor of BRR1 protein 2
 gi|1431108|emb|CAA98650.1| SUB2 [Saccharomyces cerevisiae]
 gi|51013265|gb|AAT92926.1| YDL084W [Saccharomyces cerevisiae]
 gi|285810951|tpg|DAA11775.1| TPA: Sub2p [Saccharomyces cerevisiae S288c]
          Length = 446

 Score =  129 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 91/375 (24%), Positives = 154/375 (41%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P++  A++D G+  P+ +Q  TIP  +   DV   A++G GKTA FVL  L  
Sbjct: 64  FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 123

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ--NKKLE 120
           L+     V +                   F KY  +    V      I  +A+    K  
Sbjct: 124 LDPVPGEVAVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDT 183

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+            +   L +    ++ +    + ++     +Q I    P  +Q 
Sbjct: 184 APHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRDKQV 243

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ E++ +   FLQNP  I V+  +         +     +  K        L 
Sbjct: 244 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNR--KLAQLL 301

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF         L   L    F    +HG++ Q  R+     FK+   ++ V
Sbjct: 302 DDLEFNQVIIFVKSTTRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICV 361

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           ++D+  RG+DI  +    N+D+ N A+ Y+HR+GR GR G  G A + V +KED + +  
Sbjct: 362 STDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDEEVLAK 421

Query: 360 IEKLIEKKVDWLNGD 374
           I++  + K+     +
Sbjct: 422 IQERFDVKIAEFPEE 436


>gi|94988990|ref|YP_597091.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94990990|ref|YP_599090.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270]
 gi|94992883|ref|YP_600982.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
 gi|94542498|gb|ABF32547.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94544498|gb|ABF34546.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270]
 gi|94546391|gb|ABF36438.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
          Length = 447

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 118/366 (32%), Positives = 184/366 (50%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      V  A+ + G+V PT +Q + IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDYHFKQYVQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNK 117
             L++ +A V++    I  P+RELA Q+ D  ++  K++   + L              K
Sbjct: 61  EKLDEAKAEVQVV---ITAPSRELATQIFDACKQIAKHFQEEIRLANYVGGTDKLRQIEK 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++     V+DEAD  +DMGF+  +  I + +P +
Sbjct: 118 LKGSQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASLPKS 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVIEQIKTKTVIADTI---DNWLVSTKGRDKNGQLL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         ++F N K+   +L   L   G  V  IHG I  R R +I++  K+   +
Sbjct: 235 EILKTMQPYMAMLFVNTKERADDLHAFLTANGLKVAKIHGGIPPRERKRIMNQVKKLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 KELEKM 360


>gi|50311527|ref|XP_455788.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660268|sp|Q6CJV1|DRS1_KLULA RecName: Full=ATP-dependent RNA helicase DRS1
 gi|49644924|emb|CAG98496.1| KLLA0F15752p [Kluyveromyces lactis]
          Length = 748

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 133/374 (35%), Positives = 203/374 (54%), Gaps = 6/374 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L LS  V+  +   GY  P+PIQ   IP+ L   D+   A TG+GKTA+F++P++ 
Sbjct: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120
            L    A +   R ++L PTRELA QVAD  +  GK  N  T  L +GG+    Q + L+
Sbjct: 294 RLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALK 353

Query: 121 RGADVLICTP-GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              D++I TP   I    N     ++++EILVIDEADRML+ GF   +Q I SL+P  RQ
Sbjct: 354 TRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQ 413

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET--IEHCFVATYAQYSKKCALLQQ 237
           TLLFSATM  +++++    L+ P RI ++ P   A+    E   +               
Sbjct: 414 TLLFSATMNSKIKQLISLSLKKPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLI 473

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                 + K  ++F  +K+    L   L   G  V  +HG++ Q  R++ ++NFK   + 
Sbjct: 474 RKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVP 533

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIK 355
           +++ +DLA+RGLDIP +  V NFD+P   E Y+HR+GRT RAGR G++ T V  + +D  
Sbjct: 534 VLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 593

Query: 356 HIDAIEKLIEKKVD 369
            + +  + +E+  +
Sbjct: 594 IVRSAIRSVEENAE 607


>gi|71904068|ref|YP_280870.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
 gi|71803163|gb|AAX72516.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
          Length = 447

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 118/366 (32%), Positives = 184/366 (50%), Gaps = 9/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      V  A+ + G+V PT +Q + IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDYHFKQYVQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNK 117
             L++ +A V++    I  P+RELA Q+ D  ++  K++   + L              K
Sbjct: 61  EKLDEAKAEVQVV---ITAPSRELATQIFDACKQIAKHFQEEIRLANYVGGTDKLRQIEK 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  ++I TPGRI D    G L ++     V+DEAD  +DMGF+  +  I + +P +
Sbjct: 118 LKGSQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASLPKS 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVIEQIKTKTVIADTI---DNWLVSTKGRDKNGQLL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         ++F N K+   +L   L   G  V  IHG I  R R +I++  K+   +
Sbjct: 235 EILKTMQPYMAMLFVNTKERADDLHAFLTANGLKVAKIHGGIPPRERKRIMNQVKKLDFE 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V HV N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSDI 354

Query: 358 DAIEKL 363
             +EK+
Sbjct: 355 KELEKM 360


>gi|320664062|gb|EFX31249.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 457

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 127/370 (34%), Positives = 201/370 (54%), Gaps = 9/370 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GK A+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKMAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++    + +    L+L PTRELA QVA    +  +    T  L + G  PF  Q   L+
Sbjct: 64  QIDASLFQTQA---LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L + G S  ++HG+++QR R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCATEEAQRANII 356

Query: 361 EKLIEKKVDW 370
             +++ K++W
Sbjct: 357 SDMLQIKLNW 366


>gi|281210503|gb|EFA84669.1| DEAD/DEAH box helicase domain-containing protein [Polysphondylium
           pallidum PN500]
          Length = 481

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 102/399 (25%), Positives = 175/399 (43%), Gaps = 21/399 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60
            F DL L P+++  V   G+ KP+ IQ   +P ++  + ++   +Q+GTGKTA+F L ML
Sbjct: 78  TFEDLKLKPEILKGVYGIGFNKPSKIQEAALPYIIDLKQNLIAQSQSGTGKTAAFSLGML 137

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             ++     + +P+ + + PT+ELA Q+       GK  ++   L        + N  + 
Sbjct: 138 NTVDPS---IPLPQAICVCPTQELAIQIHGVVCTLGKFSSIKPLLYNNNNNNNSNNNIMY 194

Query: 121 RGADVLICTPGRI--------LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172
               V       I             R         +++ +    +   G       I  
Sbjct: 195 VYTLVKKIENQVIVGTPGKLLDLMSKRILPTQKVAMMVLDEADQMIDKRGMNDQSMKIKM 254

Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
            +P + Q LLFSAT +  +++  + F+  P               +           +  
Sbjct: 255 FLPKSVQVLLFSATFSLGVEQYIKEFVPQPNISIR-LKKEELSVDKIKQFYIDCNTPENK 313

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
            L+   + S  ++   I+F + KK    L   +  +GFSV +I G+     RM+ +  F+
Sbjct: 314 PLVLSDIYSYISIGQSIVFVHTKKTASQLATKMRAEGFSVSSITGDDSADLRMEQIKLFR 373

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE------NYIHRIGRTGRAGRHGKAF 346
           EG  +L++A+++ ARG+D+  V  V N+DVP   E       Y+HRIGR GR GR G A 
Sbjct: 374 EGKTKLLIATNILARGIDVLQVSLVINYDVPLDVEGRPDPVTYLHRIGRVGRFGRSGVAI 433

Query: 347 TLV-AKEDIKHIDAIEKLIEKKVDWLN-GDLSSLNPPLE 383
             V  + D+  I  I K + +++  L   D+ SL+  L 
Sbjct: 434 NFVKDQHDLNKILNISKHLNREIKELKRSDIESLDAILR 472


>gi|114320766|ref|YP_742449.1| DEAD/DEAH box helicase domain-containing protein [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227160|gb|ABI56959.1| DEAD/DEAH box helicase domain protein [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 427

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 167/389 (42%), Positives = 236/389 (60%), Gaps = 10/389 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F  LGLS  ++ AV + GY KPTP+Q + IP +LQ  DV   AQTGTGKTA F LPML
Sbjct: 1   MSFDSLGLSAVLLRAVAEQGYSKPTPVQAQAIPAILQGGDVMAAAQTGTGKTAGFTLPML 60

Query: 61  TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
             L + R     R  R LIL PTRELAAQV D+ + YG    L  A++ GG+    Q + 
Sbjct: 61  ERLSQNRPEGGRRRVRALILTPTRELAAQVRDSVKTYGGKLPLKTAVIFGGVGMNPQIQT 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L RG D+++ TPGR+LDH  +G + ++ +E+LV+DEADRMLDMGFI  I+ + + VP  R
Sbjct: 121 LRRGVDIVVATPGRLLDHMGQGTVDLSGVEMLVLDEADRMLDMGFIRDIRRVIAAVPKQR 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTL+FSAT + E+++++E  L+NP +IEV   ++ AE +            +        
Sbjct: 181 QTLMFSATFSKEIRQLAEGMLRNPTQIEVAARNTAAENVNQRVHPVSRGEKRALLSNL-- 238

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                  +  ++F   K     L   L++ G S  AIHGN  Q +R K L+ FK+G +++
Sbjct: 239 -IQDGDWRQVLVFTRTKHGADRLARQLDQDGLSSAAIHGNKSQSARTKALAQFKQGRVRV 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARGLDI  + HV N+++PN  E+Y+HRIGRTGRAGR G+A +LV  ++ K +D
Sbjct: 298 LVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGRGGEALSLVCVDEHKLLD 357

Query: 359 AIEKLIEKKVDW-----LNGDLSSLNPPL 382
            I KL+++ +D         D S    PL
Sbjct: 358 GIHKLLKRPIDQHIVPGFEPDPSERPQPL 386


>gi|328469481|gb|EGF40427.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus 10329]
          Length = 412

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 142/424 (33%), Positives = 218/424 (51%), Gaps = 12/424 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS +++ A+    + KPT IQ   IP +L   D+  +A TG+GKT ++ LP+L
Sbjct: 1   MPFSTLSLSSELIHALPK-DFKKPTDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  +    IL PTRELA QV++   + G+   L    L GG+  E Q + L 
Sbjct: 60  EKLSVNPEQKAL----ILVPTRELAMQVSEAINQVGQVLELNAVCLCGGVDKEQQQQALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ T GR++D  N G  L N +  LV+DEADR+LDMGF P +QNI  L+   RQT
Sbjct: 116 TNPHILVATTGRLVDLANNGLDLSN-VHYLVLDEADRLLDMGFWPDVQNIAGLISNQRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT +DEL+  ++  +Q PK++  +  +ST + I             K  +      
Sbjct: 175 AMFSATFSDELKGKAKLLMQAPKQVAAHQENSTNQDIVETLYLVNKGSKTKALIEL---I 231

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     ++F   K+N   L   L K G S  A+HGN  Q  R   L+ FK G +Q+++
Sbjct: 232 QKNAWTQALVFIGAKENADGLAKKLNKAGISANALHGNKSQDEREDALAQFKSGQMQVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG  G A +LV   ++  + AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVAMSLVCHGEMDALSAI 351

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
             L ++ +     DL    P  +K    +   A ++    +++      K+     K   
Sbjct: 352 RHLTQRALPV--QDLVGF-PVTDKPSTGESKRAPRDKKANRRTNAKKSIKQFQGKSKRPA 408

Query: 421 PLKE 424
           P  +
Sbjct: 409 PSAK 412


>gi|320586265|gb|EFW98944.1| dead box ATP-dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 623

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 98/394 (24%), Positives = 167/394 (42%), Gaps = 15/394 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL LS +    + D G+   T IQ + +P +L   DV G A+TG+GKT +F++P + +
Sbjct: 136 FADLTLSDRTKQGLADMGFETMTAIQRRALPPLLAGKDVLGAAKTGSGKTLAFLIPAVEM 195

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVAD--NFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           L   + + R    +++       A        E    +   T  ++ G        K   
Sbjct: 196 LFALKFKPRNGVGVVVVTPTRELALQIWGVAQELMAHHTQTTGIVMGGANRRAEAEKLGR 255

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++      +    N    L  ++  L+IDEADR+L++GF   ++ I  ++P  RQT
Sbjct: 256 GVNLLVATPGRLLDHLQNTPNFLYKHLRSLIIDEADRILEVGFEDELRQIIKILPKERQT 315

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSAT T ++  +++  L+          +    T++          S+   LL     
Sbjct: 316 MLFSATQTQKIDDLAKVSLRANPLYLNVDEAQQFSTVDGLEQGYVVCGSQDRFLLLWSFL 375

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHS--LEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +   K  +I      N V              V  +HG   Q  R      F      +
Sbjct: 376 KRMAGKKKVIVFFSSCNSVKYHADLLRYIDLGGVLDLHGKQKQAKRTSTFFEFCNAEQGI 435

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDIKH 356
           ++ +D+AARGLDIP V  +  FD P+    Y+HR+GRT R   GR GK+   +   ++  
Sbjct: 436 LLCTDVAARGLDIPAVDWIVQFDPPDDGRAYVHRVGRTARGTEGR-GKSLLFLLPSEVGF 494

Query: 357 IDAIEKLIEKKVDWLNGDLS-----SLNPPLEKI 385
           +  +    E +V  +  +       ++   LEK+
Sbjct: 495 LAYLR---EARVPVVEYEFPTSKVRNVQAQLEKL 525


>gi|294818017|ref|ZP_06776659.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|294322832|gb|EFG04967.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 475

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 117/359 (32%), Positives = 180/359 (50%), Gaps = 5/359 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGL  +++  +   G   P PIQ  T+P  L   D+ G A+TG+GKT +F L +L 
Sbjct: 44  SFAELGLPVELMGTLTRLGVRDPFPIQAATLPSALAGRDILGRARTGSGKTLAFGLALLA 103

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                RA  + P  L+L PTRELA QV++    Y +   L  A ++GG+    Q   L  
Sbjct: 104 RTAGLRAEAKRPLALVLVPTRELAQQVSEALAPYAEALGLRTATVVGGLAINRQVAALRA 163

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+V++ TPGR+ D   R    ++ + I V+DEAD+M DMGF+P +      +P   Q L
Sbjct: 164 GAEVVVATPGRLADLVARRDCHLDRVRIAVLDEADQMCDMGFLPQVSEALDRMPPGGQRL 223

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +  +  ++L  P    V+    +  T+EH  +  +              + 
Sbjct: 224 LFSATLDRNVDHLVRHYLTEPVPATVDRAEGSVATLEHHVLNVHPADK-----YATATEI 278

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F + K  V      L   G    A+H    Q  R   L+ FK+G + ++VA
Sbjct: 279 AARDGRVLMFLDTKHGVDQFTRHLRSSGIQAGALHSGKSQPQRTHTLARFKDGGLTVLVA 338

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +++AARG+ I  +  V N D P  A++Y+HR GRT RAG  G   TLV     + ++ +
Sbjct: 339 TNVAARGIHIEHLDLVVNVDPPADAKDYLHRGGRTARAGESGSVVTLVTPGQRRDVNRM 397


>gi|254387768|ref|ZP_05003006.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|326446864|ref|ZP_08221598.1| DEAD-box RNA-helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197701493|gb|EDY47305.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 472

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 117/359 (32%), Positives = 180/359 (50%), Gaps = 5/359 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LGL  +++  +   G   P PIQ  T+P  L   D+ G A+TG+GKT +F L +L 
Sbjct: 41  SFAELGLPVELMGTLTRLGVRDPFPIQAATLPSALAGRDILGRARTGSGKTLAFGLALLA 100

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                RA  + P  L+L PTRELA QV++    Y +   L  A ++GG+    Q   L  
Sbjct: 101 RTAGLRAEAKRPLALVLVPTRELAQQVSEALAPYAEALGLRTATVVGGLAINRQVAALRA 160

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+V++ TPGR+ D   R    ++ + I V+DEAD+M DMGF+P +      +P   Q L
Sbjct: 161 GAEVVVATPGRLADLVARRDCHLDRVRIAVLDEADQMCDMGFLPQVSEALDRMPPGGQRL 220

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +  +  ++L  P    V+    +  T+EH  +  +              + 
Sbjct: 221 LFSATLDRNVDHLVRHYLTEPVPATVDRAEGSVATLEHHVLNVHPADK-----YATATEI 275

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F + K  V      L   G    A+H    Q  R   L+ FK+G + ++VA
Sbjct: 276 AARDGRVLMFLDTKHGVDQFTRHLRSSGIQAGALHSGKSQPQRTHTLARFKDGGLTVLVA 335

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +++AARG+ I  +  V N D P  A++Y+HR GRT RAG  G   TLV     + ++ +
Sbjct: 336 TNVAARGIHIEHLDLVVNVDPPADAKDYLHRGGRTARAGESGSVVTLVTPGQRRDVNRM 394


>gi|167622895|ref|YP_001673189.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167352917|gb|ABZ75530.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 413

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 138/425 (32%), Positives = 221/425 (52%), Gaps = 14/425 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M+F DL LS  +V  +  A     T IQ   IP VL   D+  +AQTG+GKT +F LP+L
Sbjct: 1   MNFTDLKLSATIVDHL-PANLTAATEIQGLAIPEVLAGRDLLALAQTGSGKTYAFGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +       R  + L+L PTRELA QVA+  +    +  +T  +L GG+    Q K+LE
Sbjct: 60  QTIINDAVESREVKALVLVPTRELALQVAEALKLVSASTEIT--VLCGGVDKAEQLKELE 117

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +G  +++ TPGR+LD   + +L + +++ LV+DEADR+++MGF P I+ I   VP  RQT
Sbjct: 118 QGPQLIVATPGRLLDLLRQQQLSLKSVKQLVLDEADRLMEMGFWPDIERILEFVPAKRQT 177

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+  EL   +   L NPK+I     +S    I             +  +      
Sbjct: 178 LLFSATLAPELNDKALKLLHNPKKIAAQAVNSVVADINESLYIVNKGDKARALIAL---I 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q      ++F N + +   L   L K   +  A+HG+ + + R + L  FK   +Q++V
Sbjct: 235 KQHKWSQVLVFINGRDDADKLAKRLVKADINAMALHGDKEHQQRQQTLEAFKACELQVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL +RG+ I  +  V N D+P+ A  Y+HRIGRT RAG +G A +LV   +  ++ AI
Sbjct: 295 TTDLLSRGIHIDALPVVINIDLPSSAPVYVHRIGRTARAGDNGIAISLVCHGEADNLKAI 354

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK--NNPIPQKSTGFDRRKKNYSSQKS 418
           + L  ++++     L +L    E  D       ++   +    + +   R  K+++++++
Sbjct: 355 QLLTGRELE-----LEALG-GFEVTDQPSSGERKRAPRDKKANRRSQNKRSAKDFAAKRT 408

Query: 419 HIPLK 423
             P K
Sbjct: 409 KFPAK 413


>gi|67516603|ref|XP_658187.1| hypothetical protein AN0583.2 [Aspergillus nidulans FGSC A4]
 gi|74681494|sp|Q5BFU7|DBP10_EMENI RecName: Full=ATP-dependent RNA helicase dbp10
 gi|40747526|gb|EAA66682.1| hypothetical protein AN0583.2 [Aspergillus nidulans FGSC A4]
 gi|259489152|tpe|CBF89188.1| TPA: ATP-dependent RNA helicase dbp10 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5BFU7] [Aspergillus
           nidulans FGSC A4]
          Length = 936

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 129/405 (31%), Positives = 216/405 (53%), Gaps = 40/405 (9%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIP++++  DV G+A+TG+GKTA+FV+PM+  
Sbjct: 93  FQAMGLNANLLKAIARKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIEK 152

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +    R LIL P+RELA Q     ++ GK  +L   LL+GG   E Q   +   
Sbjct: 153 LKSHSTKFGA-RGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFGMMAGN 211

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P TRQTLL
Sbjct: 212 PDIVIATPGRFLHLKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPSTRQTLL 271

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-------------------- 222
           FSAT+   L + +   LQ+P  + ++T S  +  +++ F                     
Sbjct: 272 FSATLPKSLVEFARAGLQDPTLVRLDTESKISPDLQNAFFSVKSAEKEGALLYILNEVIK 331

Query: 223 -------------------ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263
                              +   +  +        ++   T  + I+F   K +V  L  
Sbjct: 332 MPTGPTEASLRLKEKGPEDSKNKKRKRAEMERAVNMKESPTKHSTIVFAATKHHVDYLYS 391

Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323
            L + GF+V  ++G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D P
Sbjct: 392 LLREAGFAVSYVYGSLDQTARKIQVQNFRTGISNILVVTDVAARGIDIPILANVINYDFP 451

Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           ++ + ++HR+GRT RAGR G +++LV   D  ++  ++  + +K+
Sbjct: 452 SQPKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRKL 496


>gi|297828467|ref|XP_002882116.1| hypothetical protein ARALYDRAFT_483908 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327955|gb|EFH58375.1| hypothetical protein ARALYDRAFT_483908 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 739

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 127/338 (37%), Positives = 190/338 (56%), Gaps = 3/338 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D G S +++ A+    Y KPT IQ + +P+VL   DV GIA+TG+GKTA+FVLPM+ 
Sbjct: 230 TFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIV 289

Query: 62  ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +       +   P  +I  PTRELA Q+    +K+ K Y L V+ + GG+    Q K+L
Sbjct: 290 HIMDQPELQKDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKEL 349

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           + G ++++ TPGR++D      L M     LV+DEADRM D+GF P +++I   +   RQ
Sbjct: 350 KAGCEIVVATPGRLIDMLKIKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQ 409

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSATM  +++K++   L +P R+ V       E I        +   K    L + L
Sbjct: 410 TLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEK-LPWLLEKL 468

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + ++F ++K  V  +   L    F V A+HG+ DQ SRM+ L  FK G   ++
Sbjct: 469 PGMIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGIYHVL 528

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           +A+D+AARGLDI  +  V N+D+    + ++HRIGRTG
Sbjct: 529 IATDVAARGLDIKSLKTVVNYDIARDMDMHVHRIGRTG 566


>gi|215414948|emb|CAT01056.1| C. elegans protein T07D4.4e, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 497

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 113/412 (27%), Positives = 191/412 (46%), Gaps = 33/412 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+V+ A+    +  PT IQ   +PL+L     ++   AQ+GTGKTA+FVL M
Sbjct: 94  SFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTM 153

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
           L  ++     +  P+ + L PT ELA Q+ +  EK GK  +   +   I G    A   +
Sbjct: 154 LCRIDVN---LMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGR 210

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
                 V+               +  + I  LV+DEAD M+       I      +    
Sbjct: 211 KLTEQIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVEDA 270

Query: 178 ---RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
               Q++LFSAT  + +   +   ++N   + +         I+  +V    + SK  A+
Sbjct: 271 SDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQFYVQCACRDSKYAAI 330

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +     S   + + +IFC+ K +V+ L  ++  +G  V  +HG++    R   + +FK G
Sbjct: 331 VNL--YSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRG 388

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVP-----------------NRAENYIHRIGRTG 337
             ++++ +++ ARG+D+  V  V N+D+P                    E Y+HRIGRTG
Sbjct: 389 DFKVLITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTG 448

Query: 338 RAGRHGKAFTLVAKED-IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           R G+ G A  L+  ED +  I+ +E   + K+  +  D S+L   LE I++A
Sbjct: 449 RFGKTGIAINLIDSEDSMNMINVLENHFQMKIARM--DPSNL-VELEAIEMA 497


>gi|215414947|emb|CAT01054.1| C. elegans protein T07D4.4d, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 607

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 113/412 (27%), Positives = 191/412 (46%), Gaps = 33/412 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+V+ A+    +  PT IQ   +PL+L     ++   AQ+GTGKTA+FVL M
Sbjct: 204 SFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTM 263

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
           L  ++     +  P+ + L PT ELA Q+ +  EK GK  +   +   I G    A   +
Sbjct: 264 LCRIDVN---LMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGR 320

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
                 V+               +  + I  LV+DEAD M+       I      +    
Sbjct: 321 KLTEQIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVEDA 380

Query: 178 ---RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
               Q++LFSAT  + +   +   ++N   + +         I+  +V    + SK  A+
Sbjct: 381 SDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQFYVQCACRDSKYAAI 440

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +     S   + + +IFC+ K +V+ L  ++  +G  V  +HG++    R   + +FK G
Sbjct: 441 VNL--YSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRG 498

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVP-----------------NRAENYIHRIGRTG 337
             ++++ +++ ARG+D+  V  V N+D+P                    E Y+HRIGRTG
Sbjct: 499 DFKVLITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTG 558

Query: 338 RAGRHGKAFTLVAKED-IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           R G+ G A  L+  ED +  I+ +E   + K+  +  D S+L   LE I++A
Sbjct: 559 RFGKTGIAINLIDSEDSMNMINVLENHFQMKIARM--DPSNL-VELEAIEMA 607


>gi|73954677|ref|XP_860395.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX6
           (DEAD-box protein 6) (ATP-dependent RNA helicase p54)
           (Oncogene RCK) isoform 3 [Canis familiaris]
          Length = 438

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 94/377 (24%), Positives = 167/377 (44%), Gaps = 53/377 (14%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D  L  +++  + + G+ KP+PIQ ++IP+ L   D+   A+ GTGK+ ++++P+L 
Sbjct: 97  EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120
            L+    +    + +++ PTRELA QV+    +  K+     V    GG        +L+
Sbjct: 157 RLDL---KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 213

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+I TPGRILD   +G   +++++++V+DEAD++L   F+  +++I   +P  RQ 
Sbjct: 214 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 273

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LL+SAT    +QK   N                 +  +  +   Y     +     ++  
Sbjct: 274 LLYSATFPLSVQKFMINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFH 333

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                                                                   + +V
Sbjct: 334 DFRNG-------------------------------------------------LCRNLV 344

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL  RG+DI  V  V NFD P  AE Y+HRIGR+GR G  G A  L+  +D  ++ +I
Sbjct: 345 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 404

Query: 361 EKLIEKKVDWLNGDLSS 377
           E+ +  ++  +  ++  
Sbjct: 405 EEQLGTEIKPIPSNIDK 421


>gi|17536103|ref|NP_495891.1| DEAD boX helicase homolog family member (ddx-19) [Caenorhabditis
            elegans]
 gi|3879545|emb|CAA90408.1| C. elegans protein T07D4.4a, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
          Length = 1022

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 113/412 (27%), Positives = 191/412 (46%), Gaps = 33/412 (8%)

Query: 2    DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
             F +L L P+V+ A+    +  PT IQ   +PL+L     ++   AQ+GTGKTA+FVL M
Sbjct: 619  SFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTM 678

Query: 60   LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
            L  ++     +  P+ + L PT ELA Q+ +  EK GK  +   +   I G    A   +
Sbjct: 679  LCRIDVN---LMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGR 735

Query: 119  LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
                  V+               +  + I  LV+DEAD M+       I      +    
Sbjct: 736  KLTEQIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVEDA 795

Query: 178  ---RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
                Q++LFSAT  + +   +   ++N   + +         I+  +V    + SK  A+
Sbjct: 796  SDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQFYVQCACRDSKYAAI 855

Query: 235  LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
            +     S   + + +IFC+ K +V+ L  ++  +G  V  +HG++    R   + +FK G
Sbjct: 856  VNL--YSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRG 913

Query: 295  TIQLMVASDLAARGLDIPDVGHVFNFDVP-----------------NRAENYIHRIGRTG 337
              ++++ +++ ARG+D+  V  V N+D+P                    E Y+HRIGRTG
Sbjct: 914  DFKVLITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTG 973

Query: 338  RAGRHGKAFTLVAKED-IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
            R G+ G A  L+  ED +  I+ +E   + K+  +  D S+L   LE I++A
Sbjct: 974  RFGKTGIAINLIDSEDSMNMINVLENHFQMKIARM--DPSNL-VELEAIEMA 1022


>gi|17536101|ref|NP_495892.1| DEAD boX helicase homolog family member (ddx-19) [Caenorhabditis
           elegans]
 gi|3879543|emb|CAA90406.1| C. elegans protein T07D4.4b, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 638

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 113/412 (27%), Positives = 191/412 (46%), Gaps = 33/412 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+V+ A+    +  PT IQ   +PL+L     ++   AQ+GTGKTA+FVL M
Sbjct: 235 SFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTM 294

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
           L  ++     +  P+ + L PT ELA Q+ +  EK GK  +   +   I G    A   +
Sbjct: 295 LCRIDVN---LMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGR 351

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
                 V+               +  + I  LV+DEAD M+       I      +    
Sbjct: 352 KLTEQIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVEDA 411

Query: 178 ---RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
               Q++LFSAT  + +   +   ++N   + +         I+  +V    + SK  A+
Sbjct: 412 SDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQFYVQCACRDSKYAAI 471

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +     S   + + +IFC+ K +V+ L  ++  +G  V  +HG++    R   + +FK G
Sbjct: 472 VNL--YSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRG 529

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVP-----------------NRAENYIHRIGRTG 337
             ++++ +++ ARG+D+  V  V N+D+P                    E Y+HRIGRTG
Sbjct: 530 DFKVLITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTG 589

Query: 338 RAGRHGKAFTLVAKED-IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           R G+ G A  L+  ED +  I+ +E   + K+  +  D S+L   LE I++A
Sbjct: 590 RFGKTGIAINLIDSEDSMNMINVLENHFQMKIARM--DPSNL-VELEAIEMA 638


>gi|17536099|ref|NP_495893.1| DEAD boX helicase homolog family member (ddx-19) [Caenorhabditis
           elegans]
 gi|3879544|emb|CAA90407.1| C. elegans protein T07D4.4c, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 613

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 113/412 (27%), Positives = 191/412 (46%), Gaps = 33/412 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +L L P+V+ A+    +  PT IQ   +PL+L     ++   AQ+GTGKTA+FVL M
Sbjct: 210 SFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTM 269

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKK 118
           L  ++     +  P+ + L PT ELA Q+ +  EK GK  +   +   I G    A   +
Sbjct: 270 LCRIDVN---LMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGR 326

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
                 V+               +  + I  LV+DEAD M+       I      +    
Sbjct: 327 KLTEQIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVEDA 386

Query: 178 ---RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234
               Q++LFSAT  + +   +   ++N   + +         I+  +V    + SK  A+
Sbjct: 387 SDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQFYVQCACRDSKYAAI 446

Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
           +     S   + + +IFC+ K +V+ L  ++  +G  V  +HG++    R   + +FK G
Sbjct: 447 VNL--YSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRG 504

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVP-----------------NRAENYIHRIGRTG 337
             ++++ +++ ARG+D+  V  V N+D+P                    E Y+HRIGRTG
Sbjct: 505 DFKVLITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTG 564

Query: 338 RAGRHGKAFTLVAKED-IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
           R G+ G A  L+  ED +  I+ +E   + K+  +  D S+L   LE I++A
Sbjct: 565 RFGKTGIAINLIDSEDSMNMINVLENHFQMKIARM--DPSNL-VELEAIEMA 613


>gi|149743843|ref|XP_001493676.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX59
           (DEAD box protein 59) (Zinc finger HIT domain-containing
           protein 5) [Equus caballus]
          Length = 616

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 118/404 (29%), Positives = 192/404 (47%), Gaps = 12/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +DF   G    +   + +AGY  PTPIQ++ +P+ L   D+   A TG+GKTA+F+LP+ 
Sbjct: 200 IDFEHCGFPEALNHNLKEAGYEVPTPIQMQMVPVGLLGRDILASADTGSGKTAAFLLPV- 258

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119
             + +     + P  LIL PTRELA Q+    ++       +   LL+GG+P   Q  +L
Sbjct: 259 --ILRALLESKTPAALILTPTRELAIQIERQAKELMTGLPRMKTVLLVGGLPLPPQLHRL 316

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            +   V+I TPGR+LD   +  + +  I+I+V+DEAD ML MGF   + ++   VP   Q
Sbjct: 317 RQHVKVIIATPGRLLDIIKQNAVDLCGIKIVVVDEADTMLKMGFQQQVLDVLENVPQDCQ 376

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+L SAT+   +++++   L NP RI     +    ++    +       KK        
Sbjct: 377 TILVSATIPTSIEQLAGQLLHNPVRIVTGEKNLPCSSVRQIILWIEEPAKKKKLFEILND 436

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +    +    +      +  G    +IH    Q  R  IL    EG  +++
Sbjct: 437 KKLFKPPVLVFVDCKLGADLLSEAVQKVTGLKSVSIHSEKSQTERRNILKGLLEGDYEVV 496

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +  RGLD+  V  V NFD+P+  + Y+H+IGR GR G++G A T +     +    
Sbjct: 497 VSTGVLGRGLDLVSVKLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWD 556

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           I K ++     L   L  LN P        H+  RK     +++
Sbjct: 557 IAKRVKPTGSILPPQL--LNSP------YLHDQKRKEQQREKQT 592


>gi|310767698|gb|ADP12648.1| ATP-dependent RNA helicase DbpA [Erwinia sp. Ejp617]
          Length = 459

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 132/405 (32%), Positives = 212/405 (52%), Gaps = 16/405 (3%)

Query: 3   FADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY+  TP+Q +++P +L   DV   A+TG+GKTA+F L ++ 
Sbjct: 4   FSTLTQLPASQIDNLNELGYLAMTPVQAESLPAILAGRDVRAQAKTGSGKTAAFGLGVMH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++  +    + + L+L PTRELA QV     +  +  +    L + G  P  AQ   L 
Sbjct: 64  RVDASQ---YVTQALVLCPTRELADQVTKELRRLARFTSNIKILTLCGGQPVGAQRDSLL 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILDH  R  L +  I  LV+DEADRML+MGF   I  I S  P  RQT
Sbjct: 121 HAPHIVVGTPGRILDHLKRETLKLGAINTLVLDEADRMLEMGFREDIDTIISHSPQARQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    + +      Q+ +R  +   +     +       Y   +++       L 
Sbjct: 181 LLFSATWPQAIAQ----ISQSIQRDPLTIETGDVSDLPAIEQTFYEAGAREKLTALIGLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+    + ++FCN K+    + ++L+K   S   +HG+++QR R ++L  F  G+ +++V
Sbjct: 237 SERQPSSCVVFCNTKRECDEIAYALDKAQISAQPLHGDLEQRERDQMLIRFANGSCRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+ +    E ++HRIGRT RAG+ G A + VA +++    A+
Sbjct: 297 ATDVAARGLDIKALALVVNYQLSFDPEVHVHRIGRTARAGQEGCAVSFVAPDEMIRAHAL 356

Query: 361 EKLIEKKVDWLNGDLSSLN-----PPLEKIDIAQHNHARKNNPIP 400
           E  +++K+ W N  LS+L      P L ++        RK    P
Sbjct: 357 EDYLQQKLVWCN--LSALKAVAARPLLAEMVTVSLEGGRKAKIRP 399


>gi|127512383|ref|YP_001093580.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126637678|gb|ABO23321.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 441

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 130/387 (33%), Positives = 208/387 (53%), Gaps = 10/387 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           DF+ L L   +   +   GY + TPIQ K IP +L   D+   A+TG+GKTA+F LP + 
Sbjct: 25  DFSQLNLVKALQARLHHLGYQQATPIQAKAIPAILAGRDLLAGAKTGSGKTAAFALPLLQ 84

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG--IPFEAQNKK 118
            ++ +          L+L PTRELA QVAD+F  YG        ++     +   +Q   
Sbjct: 85  KLVGQRAGGGNHVGALVLVPTRELAQQVADSFISYGAELAPRAKVIAVFGGVSVNSQMLA 144

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L  GAD+L+ TPGR+LD      + ++ ++ LV+DEADRML++GF   +  I   +P  +
Sbjct: 145 LRGGADILVATPGRLLDLLGSNAVKLSQLKALVLDEADRMLNLGFTEELGEILKQLPDQK 204

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QTLLFSAT  +E+  ++   L +P  I++    S         V    + +     L   
Sbjct: 205 QTLLFSATFPEEVLSLTAKLLTDPVEIQMQEAQSADIEQRVYTVNRSNKTA-----LLAE 259

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L      +  ++F + K++  +L   LEK+G S    HG+  Q +R ++L  FK G I +
Sbjct: 260 LIKVRQWRQVLVFASAKRSCDHLAQKLEKRGISAQVFHGDKAQGARSRVLDGFKNGEITV 319

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+DI  +  V NF++P    +Y+HRIGR+GRAG  G+A +L++ ++  H  
Sbjct: 320 LIATDIAARGIDIDKLPVVINFELPRSPADYLHRIGRSGRAGETGEAISLISHDEYHHFK 379

Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLE 383
            IEK  + ++  +   G  +    PL+
Sbjct: 380 VIEKKNKLRLPREQYPGFEADAEAPLD 406


>gi|321250272|ref|XP_003191751.1| ATP-dependent RNA helicase ded1 [Cryptococcus gattii WM276]
 gi|317458218|gb|ADV19964.1| ATP-dependent RNA helicase ded1, putative [Cryptococcus gattii
           WM276]
          Length = 644

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 133/400 (33%), Positives = 203/400 (50%), Gaps = 22/400 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-- 59
           +F +  ++P ++  V  A Y  PTP+Q  +IP+V    D+   AQTG+GKT  F+ P+  
Sbjct: 161 EFTNPPINPVLLENVKYARYTTPTPVQKYSIPIVADGRDLMACAQTGSGKTGGFLFPILS 220

Query: 60  --------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105
                          T     R +   P  L+L PTREL +Q+ +   K+     +  A+
Sbjct: 221 ALFTYGPSAPPVEQDTGYGYRRTKKVYPTALVLAPTRELVSQIHEEARKFAYRSWVRPAV 280

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG    +Q + L+RG D+L  TPGR++D   RGK+ + N++ LV+DEADRMLDMGF P
Sbjct: 281 VYGGADIGSQMRALDRGCDLLSATPGRLVDLIERGKISLANVKYLVLDEADRMLDMGFEP 340

Query: 166 YIQNITSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
            I+ I           RQTL+FSAT   E+Q ++ +FL+    + V    ST+E I    
Sbjct: 341 QIRRIVDEEDMPGVLDRQTLMFSATFPREIQNLARSFLKEYIFLTVGRVGSTSENITQRV 400

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
                Q  +   L   L +    +   ++F   K+    LC  L  +  +  +IHG+  Q
Sbjct: 401 EYVDDQDKRSLLLDLLLAEQSGGLI--LVFVETKRMADTLCDFLCSRRHNATSIHGDRTQ 458

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R R   L  FK G   ++VA+ +AARGLDIP+V HV  +D+PN    Y HRIGRTGRAG 
Sbjct: 459 REREAALYAFKSGRAPILVATAVAARGLDIPNVTHVILYDLPNDVAEYTHRIGRTGRAGN 518

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381
            G +     + +      + +L+++    +   L  ++  
Sbjct: 519 VGTSTAFFNRGNSNIGKDLIELLKEANQEVPQWLVEISSE 558


>gi|262203393|ref|YP_003274601.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
 gi|262086740|gb|ACY22708.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
           43247]
          Length = 543

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 151/435 (34%), Positives = 224/435 (51%), Gaps = 29/435 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+  ++V A+ D G      IQ  T+PL +   D+ G A+TG GKT  F +P+L 
Sbjct: 26  TFAELGVDDRIVAALADDGKTHTFAIQELTLPLAMGGDDLIGQARTGMGKTFGFGVPLLH 85

Query: 62  ILEKGRARV-----RMPRTLILEPTRELAAQVADNFEK-----------YGKNYNLTVAL 105
            L              PR LI+ PTREL  QV  + E             G    L +  
Sbjct: 86  RLAHAEESGLRALDNTPRALIIVPTRELCIQVTGDLEVAAKKLTDITLADGTVRPLKITS 145

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + GG P+E+Q   L  G DV++ TPGR+LD   +G L++  + +LV+DEAD MLD+GF+P
Sbjct: 146 IYGGRPYESQIADLRAGVDVVVGTPGRLLDLAQQGHLILGKVAVLVLDEADEMLDLGFLP 205

Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
            I+ I S +P  RQT+LFSATM   +  ++  FL           +  +   E      Y
Sbjct: 206 DIERIMSALPTPRQTMLFSATMPGPIVTLARTFLH-RPTHIRAEHADDSAIHERTTQYVY 264

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
             ++   A L   +   +     +IF   K+    +   L ++GF V A+HG++ Q +R 
Sbjct: 265 RAHALDKAELVARILQAEGRGATMIFTRTKRTAQKVADDLAERGFKVGAVHGDLGQVARE 324

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           K L  F++GTI ++VA+D+AARG+DI DV HV N+ +P   +NY+HRIGRTGRAGR G A
Sbjct: 325 KALKRFRDGTIDVLVATDVAARGIDIDDVTHVINYQIPEDDKNYVHRIGRTGRAGRTGIA 384

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
            TLV  +++   + I   +   +            P E    ++H   R +  IP+ +TG
Sbjct: 385 VTLVDWDELHRWELINNALGLGIPE----------PAETYSTSEH--LRTDLSIPESTTG 432

Query: 406 FDRRKKNYSSQKSHI 420
                K  SS+K+  
Sbjct: 433 RIVAPKRESSEKTER 447


>gi|221132610|ref|XP_002156165.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 620

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 113/392 (28%), Positives = 196/392 (50%), Gaps = 9/392 (2%)

Query: 2   DFADL-GL-SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP- 58
           +F  L GL   K +  V D G+ + T IQ KT+  +L   D+ G A+TG+GKT +F++P 
Sbjct: 130 EFKSLEGLVCEKTLKGVFDMGFTQMTEIQYKTVMPLLNGRDLLGAAKTGSGKTLAFLIPT 189

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  + +           +I+ PTREL+ Q         +++  T  +++GG   + + ++
Sbjct: 190 IELLYKLNFMPRNGTGAIIISPTRELSLQTFGVLRDLLQHHQQTFGIVMGGANRKQEAER 249

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+RG ++L+ TPGR +    N    +  N++ L+IDEADR+L++GF   ++ I  ++P  
Sbjct: 250 LQRGVNILVATPGRLLDHLQNTPGFVFKNLQCLIIDEADRILEIGFEEEMKQIIKILPKK 309

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQTLLFSAT T +++ ++   L+               T+E          S+K  LL  
Sbjct: 310 RQTLLFSATQTRKVEDLARVSLKKAPLYVGVDDDKEVSTVEGLEQGYIVVPSEKRFLLLF 369

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L      V  IHG   Q+ R      F      
Sbjct: 370 TFLKKNMKKKVMVFFSSCHSVKFHSELLNYIDIPVMDIHGKQKQQKRTSTFFEFCTAESG 429

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKH 356
           +++ +D+AARGLDIP+V  +  +D P+  + YIHR+GRT R  +  G A   +  E++  
Sbjct: 430 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGSQGRGHALLFLLPEELGF 489

Query: 357 IDAIEKLIEKKV---DWLNGDLSSLNPPLEKI 385
           +  + K  +  +   D+    +S++   LEK+
Sbjct: 490 LRYL-KHAKVPLNEYDFSKAKISNIQSQLEKL 520


>gi|158514835|sp|A3LQ01|DED1_PICST RecName: Full=ATP-dependent RNA helicase DED1
          Length = 647

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 131/393 (33%), Positives = 201/393 (51%), Gaps = 19/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L   +V  +  + + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+
Sbjct: 169 SFTAPPLDELLVENITMSRFTKPTPVQKYSVPIVAGGRDLMACAQTGSGKTGGFLFPVLS 228

Query: 62  ILEKGRA------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                                  P  L++ PTREL +Q+ D  +K+     +  A++ GG
Sbjct: 229 ESYINGPAPIAESTGAFSSHKVHPTILVMAPTRELVSQIYDEAKKFAYRSWVKPAVVYGG 288

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q + L++G D+L+ TPGR+ D   RG++ + NI+ LV+DEADRMLDMGF P I++
Sbjct: 289 ADIGQQIRNLDKGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRH 348

Query: 170 ITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I               +FSAT   ++Q ++ +FL++   + V    ST+E I    +   
Sbjct: 349 IVQECDMPDVQDRQTLMFSATFPTDIQMLARDFLKDYIFLSVGRVGSTSENITQKILYVE 408

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            +  K   L      S       IIF   K+   NL   L  QGF   AIHG+  Q  R 
Sbjct: 409 DEEKKSVLLDLL---SAGDAGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYERE 465

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           K L+ FK G   ++VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A
Sbjct: 466 KALAAFKSGAAPILVATAVAARGLDIPNVAHVINYDLPSDIDDYVHRIGRTGRAGNVGIA 525

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
                + +   +  +  L+ +    +   L+ +
Sbjct: 526 TAFFNRNNKNVVKGLIDLLSEANQEVPDFLAKI 558


>gi|150864373|ref|XP_001383156.2| ATP-dependent RNA helicase of DEAD box family [Scheffersomyces
           stipitis CBS 6054]
 gi|149385629|gb|ABN65127.2| ATP-dependent RNA helicase of DEAD box family [Scheffersomyces
           stipitis CBS 6054]
          Length = 616

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 131/393 (33%), Positives = 201/393 (51%), Gaps = 19/393 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L   +V  +  + + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+
Sbjct: 138 SFTAPPLDELLVENITMSRFTKPTPVQKYSVPIVAGGRDLMACAQTGSGKTGGFLFPVLS 197

Query: 62  ILEKGRA------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109
                                  P  L++ PTREL +Q+ D  +K+     +  A++ GG
Sbjct: 198 ESYINGPAPIAESTGAFSSHKVHPTILVMAPTRELVSQIYDEAKKFAYRSWVKPAVVYGG 257

Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169
                Q + L++G D+L+ TPGR+ D   RG++ + NI+ LV+DEADRMLDMGF P I++
Sbjct: 258 ADIGQQIRNLDKGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRH 317

Query: 170 ITSLVPFTRQTL----LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
           I               +FSAT   ++Q ++ +FL++   + V    ST+E I    +   
Sbjct: 318 IVQECDMPDVQDRQTLMFSATFPTDIQMLARDFLKDYIFLSVGRVGSTSENITQKILYVE 377

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            +  K   L      S       IIF   K+   NL   L  QGF   AIHG+  Q  R 
Sbjct: 378 DEEKKSVLLDLL---SAGDAGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYERE 434

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           K L+ FK G   ++VA+ +AARGLDIP+V HV N+D+P+  ++Y+HRIGRTGRAG  G A
Sbjct: 435 KALAAFKSGAAPILVATAVAARGLDIPNVAHVINYDLPSDIDDYVHRIGRTGRAGNVGIA 494

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
                + +   +  +  L+ +    +   L+ +
Sbjct: 495 TAFFNRNNKNVVKGLIDLLSEANQEVPDFLAKI 527


>gi|116514512|ref|YP_813418.1| superfamily II DNA/RNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093827|gb|ABJ58980.1| Superfamily II DNA and RNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 453

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 125/454 (27%), Positives = 214/454 (47%), Gaps = 17/454 (3%)

Query: 1   MD--FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
           M+  F D  L  ++   +   G++KPTP+Q K IP +L+   V   A TG+GKT ++++P
Sbjct: 1   MNNIFTDTRLRSEIRQGLAKIGFIKPTPVQEKVIPAMLKGESVIVQAATGSGKTHAYLIP 60

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +L  +++    V+   T       +   +VA               L  G        + 
Sbjct: 61  ILNAIDEDARYVQAIVTAPSRELADQLYRVARQLRDNSGLNIAIAHLAGGSDRDRQIARF 120

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
            +    ++I TPGR+LD  ++  LL++ ++  VIDEAD  LD+GF+  +  I + +P   
Sbjct: 121 EQNKPQLVIATPGRLLDFADKKILLLDQVKNFVIDEADMTLDLGFLADVDKIAARLPKDV 180

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
               FSAT+  +L      ++  P+ I ++ P+  A TI++  +   ++  KK       
Sbjct: 181 VMSAFSATIPVKLTNFLRKYMAKPEEIVIDNPAVIAPTIKNDLLDIGSKDRKKIVYKLL- 239

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
             +       ++F N K+ V  L   L KQG  V  IHG+I +R R + L   + G  Q 
Sbjct: 240 --TMGQPYLALVFANTKQMVDELADYLTKQGLKVAKIHGSITERERKRTLREVRAGQYQY 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VASDLAARG+D+P V  V N+++P   E  IHRIGRTGR G  G A TLV +E++  + 
Sbjct: 298 VVASDLAARGIDLPGVSLVINYEIPKDLEFIIHRIGRTGRNGLPGHAVTLVREEEMNRVG 357

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLE----------KIDIAQHNHARKNNPIPQKSTGFDR 408
           A+E  +    D++     +L P              + +  H          ++  G+ +
Sbjct: 358 ALE-YMGVHFDFVEIKDGALAPRTHYRRRDNRTAANLQLDPHMKGVVKKIKSKRKPGYKK 416

Query: 409 RKKNYSSQKSHIPLK-ESEKISKLQQDIQENDAD 441
           + K    + +    K E+    + Q+ +++   +
Sbjct: 417 KIKQAIQEDNRKKRKIEARHEMRHQKHLRKRKRE 450


>gi|50293331|ref|XP_449077.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74690687|sp|Q6FL17|SUB2_CANGA RecName: Full=ATP-dependent RNA helicase SUB2
 gi|49528390|emb|CAG62047.1| unnamed protein product [Candida glabrata]
          Length = 439

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 90/377 (23%), Positives = 156/377 (41%), Gaps = 9/377 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P++  A++D G+  P+ +Q  TIP  +   DV   A++G GKTA FVL  L  
Sbjct: 57  FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 116

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN----KK 118
           L+     V +   +I            +         ++  A+  GG P          K
Sbjct: 117 LDPVPGEVSVV--VICNARELAYQIRNEYLRFSKYMPDVRTAVFYGGTPIAKDAELLKNK 174

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
                 V+           ++   L +    ++ +    + ++     +Q I    P  +
Sbjct: 175 DTAPHIVVATPGRLKALVRDKMIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRDK 234

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q ++FSAT++ E++ +   FLQNP  I V+  +         +     +  K        
Sbjct: 235 QVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNR--KLAQ 292

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           L         IIF         L   L    F    +HG++ Q  R+     FK+   ++
Sbjct: 293 LLDDLEFNQVIIFVKSTSRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRI 352

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHI 357
            V++D+  RG+DI  +    N+D+ N A+ Y+HR+GR GR G  G A + V+ KED + +
Sbjct: 353 CVSTDVFGRGIDIERINLAINYDLLNEADQYLHRVGRAGRFGTKGLAISFVSNKEDEEVL 412

Query: 358 DAIEKLIEKKVDWLNGD 374
             I++  + K+     +
Sbjct: 413 SKIQERFDVKIAEFPEE 429


>gi|227525|prf||1705301A ATP dependent RNA helicase
          Length = 697

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 131/396 (33%), Positives = 211/396 (53%), Gaps = 21/396 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ +   ++  +    Y +PTP+Q   IP+++++ D+   AQTG+GKTA+F+LP+L+
Sbjct: 222 SFHDVTMGEIIMGNIQLTRYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPILS 281

Query: 62  ILE---------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
            +                +   R + P +L+L PTRELA Q+ +   K+     +   ++
Sbjct: 282 QIYADGPGDAMKHLQENGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVV 341

Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
            GG     Q + LERG  +L+ TPGR++D   RGK+ ++  + LV+DEADRMLDMGF P 
Sbjct: 342 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 401

Query: 167 IQ----NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
           I+      T      RQT++FSAT   E+Q ++ +FL     + V    ST+E I    V
Sbjct: 402 IRRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVV 461

Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282
                  +   L       +D++   ++F   KK    L   L ++G++  +IHG+  QR
Sbjct: 462 WVEEMDKRDFLLDLLNATGKDSL--TLVFVETKKGADALEDFLYEEGYACTSIHGDRSQR 519

Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342
            R + L  F+ G   ++VA+ +AARGLDI +V HV NFD+P+  E Y+ RIGRTGR G  
Sbjct: 520 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVERIGRTGRVGNL 579

Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
           G A +   +++I     +  L+ +    +   L ++
Sbjct: 580 GLATSFFNEKNINITKDLLDLLVEAKQEVPSWLENM 615


>gi|212379240|gb|ACJ24856.1| putative ATP-dependent RNA helicase [Streptomyces pactum]
          Length = 788

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 142/438 (32%), Positives = 223/438 (50%), Gaps = 14/438 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL  ++V  +   G   P PIQ  TIP  +   D+ G  +TG+GKT SF LP+L
Sbjct: 87  LTFADLGLPEQIVRKLAQNGVTTPFPIQAATIPDAMAGRDILGRGRTGSGKTLSFGLPLL 146

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T L  G    + PR LIL PTRELA QV+D  + YG    L + ++ GG     Q   LE
Sbjct: 147 TTLSGGHTEKKRPRGLILTPTRELAMQVSDALQPYGDVLGLKLKVVCGGTSMGNQIYALE 206

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+ D  +RG   ++ +++ V+DEAD+M DMGF+P +  I  LVP   Q 
Sbjct: 207 RGVDILVATPGRLRDIIDRGAASLDRVQVAVLDEADQMADMGFLPEVTEILDLVPQGGQR 266

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ +E+  + + +L +P   EV+  +    T+ H  +       K          
Sbjct: 267 LLFSATLENEIDTLVKRYLVDPVTHEVDPSAGAVSTMTHHVLVV-----KPKDKAPVTAA 321

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   +     +   L   G    A+HG + Q +R + L++FK+G + ++V
Sbjct: 322 IAARKGRTIIFVRTQLGADRVAEQLRDSGVRADALHGGMTQGARTRTLADFKDGYVNVLV 381

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ +  +  V N D     ++Y+HR GRT RAG+ G   +L      +    I
Sbjct: 382 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGQSGTVVSLALPHQRRQ---I 438

Query: 361 EKLIEKK-VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
            +L+E   VD     +       E  D+A+   AR    +  +S     ++   + ++  
Sbjct: 439 FRLMEDAGVDASRHIVGGAGAFDE--DVARITGARSLTEVQAESAANSAKQ---AEREVE 493

Query: 420 IPLKESEKISKLQQDIQE 437
              +E E++ +   +++E
Sbjct: 494 QLTRELERVQRRATELRE 511


>gi|255716336|ref|XP_002554449.1| KLTH0F05610p [Lachancea thermotolerans]
 gi|238935832|emb|CAR24012.1| KLTH0F05610p [Lachancea thermotolerans]
          Length = 396

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 207/377 (54%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L  +++  +   G+V P+ IQ + I  + + HDV   AQ+GTGKT +F +  L 
Sbjct: 23  KFDDLNLKEELLRGIYGYGFVDPSAIQQRAILPITEGHDVLAQAQSGTGKTGTFSIAALQ 82

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++    +++ P+ L+L PTRELA Q+         + ++ V   IGG  F    + L  
Sbjct: 83  KIDP---KIKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEALRD 139

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA +++ TPGR+ D   R +   ++I++ ++DEAD ML  GF   I  I +L+P T Q +
Sbjct: 140 GAQIVVGTPGRVFDMIERRRFRTDHIKMFILDEADEMLSSGFKEQIYKIFTLLPPTTQVV 199

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F++NP RI V     T E I+  F+    +  K        L  
Sbjct: 200 LLSATMPQDVLEVTTKFMRNPIRILVKKDELTLEGIKQFFINVEEEDYKYDC--LSDLYD 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN ++ V  L   L    F+V AI+ ++ Q+ R  I+  F+ G+ +++++
Sbjct: 258 SISVTQAVIFCNTRRKVEELTQRLVADNFTVSAIYSDLPQQQRDTIMKEFRTGSSRILIS 317

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A   V  +D+  +  +E
Sbjct: 318 TDLLARGIDVQQVSLVINYDLPTNKENYIHRIGRGGRFGRKGIAINFVTNKDVGAMRELE 377

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ L  ++S L
Sbjct: 378 RFYSTQIEELPANISEL 394


>gi|91792542|ref|YP_562193.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91714544|gb|ABE54470.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 465

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 147/440 (33%), Positives = 224/440 (50%), Gaps = 21/440 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ LGL+  +V A+  A  V  T IQ   IP  L+  DV  +AQTG+GKT +F L +L
Sbjct: 30  VSFSQLGLTKALVTALPKA-LVSATDIQRLAIPAGLKGKDVLALAQTGSGKTLAFGLVIL 88

Query: 61  TILEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
             L             P  L++ PTRELA QV           NLT A++ GG   + Q 
Sbjct: 89  EKLLLQAKEKSVAQDKPSALVIVPTRELAQQVHHELNTVAMKLNLTSAIVCGGADLDKQI 148

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L +G  +LI TPGR+L       + +++I+ LV+DEADR+L+MGF P IQ I + +P 
Sbjct: 149 DALAQGPQLLIATPGRLLALVQEKAVSLSDIKHLVLDEADRLLEMGFWPDIQKIIAFIPA 208

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC---- 232
             Q LLFSAT+   L++++++ L  P+RIE    S+    IE            +     
Sbjct: 209 NCQKLLFSATLPVPLRELADSLLYKPQRIEAKAASTQVAEIEERAYLVNKGSKAQALIAL 268

Query: 233 -------ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
                      +    +      ++F N K +  +L   L K G +  A+HG+ +Q  R 
Sbjct: 269 LKDAPLKQAGNKQTGIKQPSLQTLVFINGKDDADSLAKKLNKAGLNAKALHGDKEQNIRE 328

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L+ FK+GT+ ++VA+DL ARG+ + ++  V NF +P     Y+HRIGRTGRAG  G A
Sbjct: 329 QTLAEFKQGTVTVLVATDLLARGIHLSELPQVINFALPESGATYVHRIGRTGRAGAKGLA 388

Query: 346 FTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
            +LV   + ++++AIE   ++  ++D L G   +  P  E    A+H    K  P  +++
Sbjct: 389 ISLVCHGESQYLEAIEAFTQRPLRLDALAGFPVTDKPAPETAANARHTDKPKRAPRDKQA 448

Query: 404 TGFDRRKKNYSSQKSHIPLK 423
              +RR  N  S K     K
Sbjct: 449 ---NRRSMNKKSIKDFQSKK 465


>gi|315054597|ref|XP_003176673.1| ATP-dependent RNA helicase DBP5 [Arthroderma gypseum CBS 118893]
 gi|311338519|gb|EFQ97721.1| ATP-dependent RNA helicase DBP5 [Arthroderma gypseum CBS 118893]
          Length = 481

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 98/399 (24%), Positives = 193/399 (48%), Gaps = 19/399 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +LGL   V+  +    + +P+ IQ + +PL++     ++ G +Q+GTGKTA+FVL +
Sbjct: 81  SFEELGLDEAVLRGLRQMRFSRPSKIQERALPLLMSNPPQNMIGQSQSGTGKTAAFVLNV 140

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ LE     + +P+ LIL P+RELA Q+    +  G    +    +   +P E    + 
Sbjct: 141 LSRLEVTPEMINVPQALILAPSRELARQIVGVVQVMG--SFIEGLKIATLVPMETNRNQP 198

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              + V+            R     +   +++ +  + +   G       + S +P T Q
Sbjct: 199 VEASLVVGTPGTVQDFIRKRLFNTQHVKVLVLDEADNMLDQQGLGDQCIRMKSSLPKTTQ 258

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT  D + + +  F  N  ++ +     T E I+  ++   +   K   L++   
Sbjct: 259 IVLFSATFPDSVVRYAHKFAPNANQLTLKHEELTVEGIKQLYLDCDSTDHKYEILVK--F 316

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+ + IIF   + + V +   +  +G +V ++ G ++ + R +++ +F++GT +++
Sbjct: 317 YGLLTIGSSIIFVKTRASAVEIERRMVDEGHTVVSLTGGVEGQKRDEVIDSFRKGTAKVL 376

Query: 300 VASDLAARGLDIPDVGHVFNFDVPN-----------RAENYIHRIGRTGRAGRHGKAFTL 348
           + +++ ARG+D+  V  V N+D+P              + Y+HRIGRTGR GR G A + 
Sbjct: 377 ITTNVLARGIDVQTVSMVINYDIPELHAPGAGERVADPQTYLHRIGRTGRFGRVGVAVSF 436

Query: 349 VA-KEDIKHIDAIEKLIEKKVDWLNG-DLSSLNPPLEKI 385
           V+ KE+   +  I+K     +  ++  D   +   ++K+
Sbjct: 437 VSNKEEWTMLMDIQKYFGTDIMRVDSRDWDEVEEVVKKV 475


>gi|238494730|ref|XP_002378601.1| ATP dependent RNA helicase (Dbp5), putative [Aspergillus flavus
           NRRL3357]
 gi|220695251|gb|EED51594.1| ATP dependent RNA helicase (Dbp5), putative [Aspergillus flavus
           NRRL3357]
          Length = 487

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 93/412 (22%), Positives = 182/412 (44%), Gaps = 22/412 (5%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVL-P 58
            F DLGL P+++  +    + KP+ IQ + +PL+L     ++ G +Q+GTGKTA+FVL  
Sbjct: 79  SFEDLGLDPRILQGLSAMNFRKPSKIQERALPLLLNNPPKNLVGQSQSGTGKTAAFVLNA 138

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  +        + P+ LIL PTRELA Q+    +  G+  +             +    
Sbjct: 139 LSRLDLSTEQAQKTPQALILAPTRELARQIVGVVQCMGQFLDGLNVSTAVPADTNS-RHS 197

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
               + V+      +     R  +      +++ +  + +   G       + +L+P   
Sbjct: 198 KIESSVVVGTPGTVMDMIRKRVMVANKLKVLVLDEADNMLDQQGLGDQCIRVKALLPKDI 257

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT    + + +  F      + +     T E I+  ++    +  K   L+Q  
Sbjct: 258 QVVLFSATFPTHVHQYASKFAPQANELTLQHEELTVEGIKQLYLDCSDEEDKYKTLVQL- 316

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                T+ + IIF   + +   +   +  +G +V ++ G I+   R  ++  F+ G  ++
Sbjct: 317 -YGLLTVASSIIFVKTRASAAEIEKRMVAEGHTVASLTGGIEGSQRDAVIDQFRAGQAKV 375

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPN-----------RAENYIHRIGRTGRAGRHGKAFT 347
           ++ +++ ARG+D+  V  V N+D+P              + Y+HRIGRTGR GR G + +
Sbjct: 376 LITTNVLARGIDVSTVSMVINYDIPELHQPGAPERQADFQTYLHRIGRTGRFGRVGVSIS 435

Query: 348 LVA-KEDIKHIDAIEKLIEKKVDWLN----GDLSSLNPPLEKIDIAQHNHAR 394
            V+ +E+   ++ I++     +  ++     ++  +     K   AQ    R
Sbjct: 436 FVSNREEWNMLNQIQQYFNCTIQRVDTKDWDEVEDIIKKTIKNTRAQAQFGR 487


>gi|302543660|ref|ZP_07296002.1| putative ATP-dependent RNA helicase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461278|gb|EFL24371.1| putative ATP-dependent RNA helicase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 736

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 145/453 (32%), Positives = 226/453 (49%), Gaps = 12/453 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+LGL  ++V  +   G   P PIQ  TIP  +   D+ G  +TG+GKT SF LP+L
Sbjct: 63  ITFAELGLPEQIVRKLAQNGVTTPFPIQAATIPDAMAGKDILGRGRTGSGKTLSFGLPLL 122

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           T L  G    + PR LIL PTRELA QV+D  + YG    L + ++ GG     Q   LE
Sbjct: 123 TSLAGGHTEKKRPRGLILTPTRELAMQVSDALQPYGDVLGLKLKVVCGGTSMGNQIYALE 182

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG D+L+ TPGR+ D  +RG   ++ +++ V+DEAD+M DMGF+P +  I  LVP   Q 
Sbjct: 183 RGVDILVATPGRLRDIIDRGAATLDKVQVAVLDEADQMADMGFLPEVTEILDLVPQGGQR 242

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ +E+  + + +L +P   EV++      T+ H  +       K          
Sbjct: 243 LLFSATLENEIDSLVKRYLVDPVTHEVDSAQGAVTTMTHHVLVV-----KPKDKAPVTAA 297

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   +     +   L   G    A+HG + Q +R + L++FK+G + ++V
Sbjct: 298 IAARKGRTIIFVRTQLGCDRVAEQLCDAGVRADALHGGMTQGARTRTLADFKDGYVNVLV 357

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ +  +  V N D     ++Y+HR GRT RAG+ G   +L      +    I
Sbjct: 358 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGQSGTVVSLALPHQRRQ---I 414

Query: 361 EKLIEKK-VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
            +L+E   VD     +       E  D+A+   AR    +  ++     ++     Q   
Sbjct: 415 FRLMEDAGVDASRHIVGGAGVFDE--DVARITGARSLTEVQAEAAANAAKQAEREVQDLT 472

Query: 420 IPLKE-SEKISKLQQDIQENDADSLGFRGNMPA 451
             L++   +  +L+++     A +   RG  PA
Sbjct: 473 RELEKVQRRAGELREEADRLTARAARERGETPA 505


>gi|172056647|ref|YP_001813107.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171989168|gb|ACB60090.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 391

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 100/386 (25%), Positives = 184/386 (47%), Gaps = 12/386 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           MDF    + P +  A   A + K  P+Q + IPL+ +R DV   A TGTGKT ++V+P L
Sbjct: 1   MDF----MKPFITEAWERARFEKMMPVQEQAIPLLRERKDVLVEAPTGTGKTLAYVIPAL 56

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ++++        + +I  PTREL  Q+    + + +   +     IGG+  + Q+++L+
Sbjct: 57  ELIDENE---PHIQVVITAPTRELVMQIHQVIQLFSQGSGIKSGAFIGGVELKRQHERLK 113

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           +   +++ TPGR+++  +  K+ M+ ++++V+DEAD++ + G       I +     RQ 
Sbjct: 114 KKPQIIVGTPGRLVELIDSKKMKMHKVKLIVLDEADQIYESGMSASATRIANSALRDRQL 173

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
              SAT+ +   +  +    N           + +         Y + S++         
Sbjct: 174 AFISATLPERTAEWGKTLFANEPERIKVERVMSTQVK-----FGYIEMSRRLKPEYLRRL 228

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           +       + F N +  +  L   L K       +     +R RM+ L ++K G   L+V
Sbjct: 229 ANMQGAKVLTFINNRSFLGPLNGELSKFSLKYRILDAEKGKRERMETLRSYKRGEFPLLV 288

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            + LAARGLDI  V HV ++D+P   ++++HR GRTGR    G    LV   D+KH+  +
Sbjct: 289 TTGLAARGLDIEAVTHVVHYDLPESFDDFVHRSGRTGRGNASGMVLALVTDHDLKHLKTL 348

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKID 386
            K +  +++ +      + P  E+ +
Sbjct: 349 TKQMGVELEEMEIYRGEVIPKREETE 374


>gi|254454125|ref|ZP_05067562.1| ATP-dependent RNA helicase RhlE [Octadecabacter antarcticus 238]
 gi|198268531|gb|EDY92801.1| ATP-dependent RNA helicase RhlE [Octadecabacter antarcticus 238]
          Length = 501

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 187/401 (46%), Positives = 266/401 (66%), Gaps = 12/401 (2%)

Query: 41  VCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN 100
           + GIAQTGTGKTA F LPM+T+L++GRAR RMPR+L+L PTRELAAQVA+NF+ Y K   
Sbjct: 1   MLGIAQTGTGKTAGFTLPMITMLKRGRARARMPRSLVLAPTRELAAQVAENFDTYAKYTK 60

Query: 101 LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160
           LT ALLIGG+ F+ Q+  ++RG DVLI TPGR+LDHF RGKL++++++I+V+DEADRMLD
Sbjct: 61  LTKALLIGGVSFKEQDNLIDRGVDVLIATPGRLLDHFERGKLILSDVKIMVVDEADRMLD 120

Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220
           MGFIP I+ I  L PFTRQTL FSATM  E+++++  FL NP +IEV   ++T+ETI   
Sbjct: 121 MGFIPDIERIFGLTPFTRQTLFFSATMAPEIERITNTFLSNPAKIEVARAATTSETITQG 180

Query: 221 FVATYAQY------SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274
            +             K+  L   +       +NGIIFCN+K +V  +  S+ K G     
Sbjct: 181 VIMFKGSKKASEASEKQKLLRDIIASEGADCRNGIIFCNRKIDVDAVAKSMTKAGLDASP 240

Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334
           IHG+++Q  RM+ L+ F++GT++ +VASD+AARGLDIP+V HVFN+DVP+ AE+Y+HRIG
Sbjct: 241 IHGDLEQSHRMRTLAKFRDGTLRFLVASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIG 300

Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN-GDLSSLNPPLEKIDIAQHNHA 393
           RTGRAG+ G    +    D K+ D IE+L+E  +  +    ++S+ P    +D A  +  
Sbjct: 301 RTGRAGKTGTTIMICTPRDQKNFDDIERLVEMAIPRMELPGMASVAPVATPVDAAAPS-- 358

Query: 394 RKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQD 434
              +  P+++     R +   ++K  I   ++ +    QQD
Sbjct: 359 ---DDKPKRTRTRGGRGRRTDAEKVAISPVDAAQADTAQQD 396


>gi|254249351|ref|ZP_04942671.1| Superfamily II DNA and RNA helicase [Burkholderia cenocepacia
           PC184]
 gi|124875852|gb|EAY65842.1| Superfamily II DNA and RNA helicase [Burkholderia cenocepacia
           PC184]
          Length = 436

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 149/401 (37%), Positives = 218/401 (54%), Gaps = 24/401 (5%)

Query: 24  PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRE 83
            TPIQ  ++P+ L   D+   A+TG+GKTA+F L +L  L+    R    + +IL PTRE
Sbjct: 1   MTPIQAASLPVALAGQDLIAQAKTGSGKTAAFSLALLARLDA---RSFDVQAMILCPTRE 57

Query: 84  LAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142
           LA QVA    +  +       L + G  P   Q + LE GA +++ TPGRI+DH +RG L
Sbjct: 58  LADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPGRIMDHLDRGNL 117

Query: 143 LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNP 202
            ++ +  LV+DEADRMLDMGF   I  +  + P TRQTLLFSAT  D + K+S+ FL+NP
Sbjct: 118 KLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTLLFSATYPDGIAKLSQQFLRNP 177

Query: 203 KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLC 262
           K I++      ++  +      Y     +       L +     + I FCN K+   +L 
Sbjct: 178 KEIKLAERHDDSKIRQR----FYEVTEDERLHAVGQLLNHYRPVSTIAFCNTKQQCRDLL 233

Query: 263 HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322
             L  QGF   A+HG +DQR R ++L  F   +  ++VA+D+AARGLDI  +  V N DV
Sbjct: 234 DVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDV 293

Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW------LNGDLS 376
               E ++HRIGRTGRA + G A +LV+ +++  + AIE+  +++V+W         D S
Sbjct: 294 TPDPEVHVHRIGRTGRADQDGWALSLVSMDEMGRVGAIEQAQKREVEWHPLAELKPADDS 353

Query: 377 SLNPPLEKIDIAQHNHARKNNPIP-------QKSTGFDRRK 410
            L PP+E + I      RK+   P           GFD ++
Sbjct: 354 VLLPPMETLQIL---GGRKDKIRPGDVLGALTGDAGFDGKQ 391


>gi|239613976|gb|EEQ90963.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis ER-3]
          Length = 945

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 127/401 (31%), Positives = 204/401 (50%), Gaps = 36/401 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPL+L   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 88  FQSMGLNATLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 147

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q + +   
Sbjct: 148 LKNHSAKFGS-RALILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMAGN 206

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 207 PDIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPSSRQTLL 266

Query: 183 FSATMTDELQKVSE-----------------------------------NFLQNPKRIEV 207
           FSAT+   L + +                                      L     +  
Sbjct: 267 FSATLPKSLVEFARAGLQEPTLIRLDAESKISPDLQNAFFTVKSSEKEGALLHLLHEVIK 326

Query: 208 NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
                T         A   +  K+        +   T  + IIF   K +V  L   L  
Sbjct: 327 IPTGETEAHKRAKEEAKNPKKRKRSEFASNSHKESPTEHSTIIFTATKHHVDYLVSILRI 386

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            GF+V   +G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D P++A+
Sbjct: 387 SGFAVSYAYGSLDQTARKIEVQNFRSGITHILVVTDVAARGIDIPILSNVINYDFPSQAK 446

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            ++HR+GRT RAG+ G +++L+ + D  ++  ++  + + +
Sbjct: 447 IFVHRVGRTARAGKTGWSYSLIRESDAPYLLDLQLFLGRPL 487


>gi|261193383|ref|XP_002623097.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis
           SLH14081]
 gi|239588702|gb|EEQ71345.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis
           SLH14081]
          Length = 945

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 127/401 (31%), Positives = 204/401 (50%), Gaps = 36/401 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPL+L   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 88  FQSMGLNATLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 147

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q + +   
Sbjct: 148 LKNHSAKFGS-RALILLPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMAGN 206

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 207 PDIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPSSRQTLL 266

Query: 183 FSATMTDELQKVSE-----------------------------------NFLQNPKRIEV 207
           FSAT+   L + +                                      L     +  
Sbjct: 267 FSATLPKSLVEFARAGLQEPTLIRLDAESKISPDLQNAFFTVKSSEKEGALLHLLHEVIK 326

Query: 208 NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
                T         A   +  K+        +   T  + IIF   K +V  L   L  
Sbjct: 327 IPTGETEAHKRAKEEAKNPRKRKRSEFASNSHKESPTEHSTIIFTATKHHVDYLVSILRI 386

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            GF+V   +G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D P++A+
Sbjct: 387 SGFAVSYAYGSLDQTARKIEVQNFRSGITHILVVTDVAARGIDIPILSNVINYDFPSQAK 446

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            ++HR+GRT RAG+ G +++L+ + D  ++  ++  + + +
Sbjct: 447 IFVHRVGRTARAGKTGWSYSLIRESDAPYLLDLQLFLGRPL 487


>gi|327485960|gb|AEA80366.1| ATP-dependent RNA helicase VCA0990 [Vibrio cholerae LMA3894-4]
          Length = 406

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 196/374 (52%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A+  A   +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 1   MSFSSLALSADLIQALPKA-ITEPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++   + G    L    L GG+    Q   L 
Sbjct: 60  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKTEQQNALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G  L     + V+DEADR+LDMGF P +Q + S     RQT
Sbjct: 116 ENPNILVATTGRLFDLTQSGLRLNRVTTL-VLDEADRLLDMGFWPQVQALASQTAGVRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++            +  +      
Sbjct: 175 VMCSATFSDDLKLKAQQLMRVPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK G+ Q+++
Sbjct: 235 QWP---QVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAI 351

Query: 361 EKLIEKKVDWLNGD 374
             L ++++   N D
Sbjct: 352 RTLTQRQLPVQNLD 365


>gi|311069115|ref|YP_003974038.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
 gi|310869632|gb|ADP33107.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
          Length = 438

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 134/441 (30%), Positives = 210/441 (47%), Gaps = 10/441 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L P ++ AV   G+ +PT IQ + IP VL+R  V G +QTGTGKT +++LP+L 
Sbjct: 5   KFELYDLKPFIIDAVHRLGFYEPTDIQKRLIPAVLKRESVIGQSQTGTGKTHAYLLPLLN 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V+   T           Q A    +   + ++     IGG   +    KL+ 
Sbjct: 65  EIDPNKDVVQAVITAPTRELANQIHQEALKITESMTDDSIRSKCFIGGTDKQKSIDKLKT 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI D      L +   + LVIDEAD MLDMGFI  +  I S +P   Q L
Sbjct: 125 QPHLVVGTPGRIADLIKEQALNVYKAKSLVIDEADLMLDMGFIADVDYIGSRMPEDLQML 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+ ++L+   + +++NPK   V     TAE IEH  + +  +   K         S
Sbjct: 185 VFSATIPEKLKPFLKKYMENPKYAHVEPKQITAEKIEHVLIPSKHRDKDKLLFDI---MS 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                 GI+F N K    ++   L  +G  +  +HG +  R R K++    +     ++A
Sbjct: 242 HQNPYLGIVFANTKNTADHIASYLTGKGMKIGLLHGGLTPRERKKVMKQINDLEFTYVIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+DI  V HV N+++P+  + Y+HR+GRT RAG  G+A T+    D   +  +E
Sbjct: 302 TDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQAMTIYELSDEDALVKLE 361

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP--IPQKSTGFDRRKKNYSSQKSH 419
           K +    +++  +        +K D  Q    RK  P    + +    ++ K        
Sbjct: 362 K-MGIVFEYVELEKGEW----KKGDDRQRRKNRKKTPNEADEMAQRLVKKPKKVKPGYKK 416

Query: 420 IPLKESEKISKLQQDIQENDA 440
               E EKI K Q+  Q    
Sbjct: 417 KMSYEMEKIRKKQRRQQSKRG 437


>gi|260947074|ref|XP_002617834.1| hypothetical protein CLUG_01293 [Clavispora lusitaniae ATCC 42720]
 gi|238847706|gb|EEQ37170.1| hypothetical protein CLUG_01293 [Clavispora lusitaniae ATCC 42720]
          Length = 896

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 124/483 (25%), Positives = 215/483 (44%), Gaps = 30/483 (6%)

Query: 3   FADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           ++ LG S  ++  + +   Y KPTPIQ + +P+++   D+  IA+TG+GKT +FVLPML 
Sbjct: 299 WSQLGFSSTIMSLIEEKLEYKKPTPIQCQALPIIMSGRDILSIAKTGSGKTMAFVLPMLR 358

Query: 62  ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
            +++     +   P  L+L PTRELA Q+      + K   ++     GG   E Q  +L
Sbjct: 359 HVQEQPPLSKGDGPIALLLSPTRELALQIFKQLSIFTKKLGISACCCYGGSSIELQIAEL 418

Query: 120 ERGADVLICTPGRILDH---FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++G  V++ TPGR++D           +  +  +V+DEADRM D GF P +  I S V  
Sbjct: 419 KKGCQVVVSTPGRLIDLLAANGGRVCNLRRVTYVVLDEADRMFDFGFEPQVNKIFSQVRP 478

Query: 177 TRQTLLF-------SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
            RQ++LF          +   +       +     +     +   E  E           
Sbjct: 479 DRQSILFSATFARKMEMLAKAILHDPIQVIVGGISVVSQEITQRVELFEVTENDNEDTIE 538

Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ--RSRMKI 287
           K+       +  +      +IF  ++ +   L   L  +      IHG  +Q  R     
Sbjct: 539 KRKFEKLLKVLKEFPSTKKLIFVEKQDSADKLMVKLLTENIPSLTIHGGKEQIDRKYAIK 598

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
             +  +  + +++A+ +AARGLD+  +G V N+D  N  E+Y+HR+GRTGRAG  G A+T
Sbjct: 599 NFSDNDSGVDVLIATSIAARGLDVKGLGLVVNYDPANHMEDYVHRVGRTGRAGNTGVAYT 658

Query: 348 LVAKEDIKHIDAIEKLI-----------EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
            V  +  + I  + K +           ++ V+  NG L+ +    EK           N
Sbjct: 659 FVTSKQERPITDLVKAMRLSKMPEDAIDQRLVEISNGFLTRVKDGEEKFRFGFGGKGL-N 717

Query: 397 NPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPK 456
                +++     +K Y ++   I   E+   +K +    E   +  G + ++P F + +
Sbjct: 718 KLDEIRNSHMALERKVYEAESGSISKNEN---TKTKWTNTEGTPEINGEKIDLPEFKIIE 774

Query: 457 NRG 459
            R 
Sbjct: 775 GRA 777


>gi|229514398|ref|ZP_04403859.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
 gi|229348378|gb|EEO13336.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
          Length = 416

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 196/374 (52%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A+  A   +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 11  MSFSSLALSADLIQALPKA-ITEPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 69

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++   + G    L    L GG+    Q   L 
Sbjct: 70  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKTEQQNALA 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G  L     + V+DEADR+LDMGF P +Q + S     RQT
Sbjct: 126 ENPNILVATTGRLFDLTQSGLRLNRVTTL-VLDEADRLLDMGFWPQVQALASQTAGVRQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++            +  +      
Sbjct: 185 VMCSATFSDDLKLKAQQLMRVPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK G+ Q+++
Sbjct: 245 QWP---QVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLI 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 302 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAI 361

Query: 361 EKLIEKKVDWLNGD 374
             L ++++   N D
Sbjct: 362 RTLTQRQLPVQNLD 375


>gi|229528115|ref|ZP_04417506.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|229334477|gb|EEN99962.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
          Length = 416

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 196/374 (52%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A+  A   +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 11  MSFSSLALSADLIQALPKA-ITEPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 69

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++   + G    L    L GG+    Q   L 
Sbjct: 70  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKTEQQNALA 125

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G  L     + V+DEADR+LDMGF P +Q + S     RQT
Sbjct: 126 ENPNILVATTGRLFDLTQSGLRLNRVTTL-VLDEADRLLDMGFWPQVQALASQTAGVRQT 184

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++            +  +      
Sbjct: 185 VMCSATFSDDLKLKAQQLMRVPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 244

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK G+ Q+++
Sbjct: 245 QWP---QVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLI 301

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 302 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAI 361

Query: 361 EKLIEKKVDWLNGD 374
             L ++++   N D
Sbjct: 362 RTLTQRQLPVQNLD 375


>gi|226289015|gb|EEH44527.1| ATP-dependent RNA helicase DBP8 [Paracoccidioides brasiliensis
           Pb18]
          Length = 546

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 122/383 (31%), Positives = 186/383 (48%), Gaps = 17/383 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL+P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F  P+L 
Sbjct: 117 SFATLGLAPWLVGSLSTMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAFAAPILQ 176

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +          ++L PTRELA Q+ +  +      +L   L+ GG     Q   L +
Sbjct: 177 KWSE---DPFGIFAVVLTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIALSQ 233

Query: 122 GADVLICTPGRILDHFN----RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL---- 173
              V+I TPGR+ DH N         +N    +V+DEADR+L+ G    + ++ +     
Sbjct: 234 RPHVVIATPGRLADHINSSGRDTICGLNRARFVVLDEADRLLESGPGSMLADLETCLSAL 293

Query: 174 -VPFTRQTLLFSATMTDEL-----QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
                RQTLLF+AT+T E+          +              +T              
Sbjct: 294 PPSTARQTLLFTATVTPEVRALKSMPRPASKPPIFVTEISTENQATIPRTLKQSYLLVPL 353

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             ++  L   L    ++ K  IIFCN  K    L   L + G    ++H  + Q  R   
Sbjct: 354 THREAFLHVLLSTDGNSSKAAIIFCNHTKTADLLERMLRRLGHRATSLHSLLPQSERTAN 413

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           LS F+    +++VA+D+AARGLDIP V  V NF VP   ++Y+HR+GRT RAGR G+A T
Sbjct: 414 LSRFRASAARILVATDVAARGLDIPSVSLVINFGVPRNPDDYVHRVGRTARAGREGEAVT 473

Query: 348 LVAKEDIKHIDAIEKLIEKKVDW 370
           LV + D++ + AIE  + +K++ 
Sbjct: 474 LVGQRDVQLVLAIEDRVGRKMEE 496


>gi|225681783|gb|EEH20067.1| ATP-dependent RNA helicase dbp8 [Paracoccidioides brasiliensis
           Pb03]
          Length = 546

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 122/383 (31%), Positives = 186/383 (48%), Gaps = 17/383 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGL+P +V ++      +PT IQ   IP +L+  D  G ++TG+GKT +F  P+L 
Sbjct: 117 SFATLGLAPWLVGSLSTMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAFAAPILQ 176

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +          ++L PTRELA Q+ +  +      +L   L+ GG     Q   L +
Sbjct: 177 KWSE---DPFGIFAVVLTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIALSQ 233

Query: 122 GADVLICTPGRILDHFN----RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL---- 173
              V+I TPGR+ DH N         +N    +V+DEADR+L+ G    + ++ +     
Sbjct: 234 RPHVVIATPGRLADHINSSGRDTICGLNRARFVVLDEADRLLESGPGSMLADLETCLSAL 293

Query: 174 -VPFTRQTLLFSATMTDEL-----QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227
                RQTLLF+AT+T E+          +              +T              
Sbjct: 294 PPSTARQTLLFTATVTPEVRALKSMPRPASKPPIFVTEISTENQATIPRTLKQSYLLVPL 353

Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
             ++  L   L    ++ K  IIFCN  K    L   L + G    ++H  + Q  R   
Sbjct: 354 THREAFLHVLLSTDGNSSKAAIIFCNHTKTADLLERMLRRLGHRATSLHSLLPQSERTAN 413

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           LS F+    +++VA+D+AARGLDIP V  V NF VP   ++Y+HR+GRT RAGR G+A T
Sbjct: 414 LSRFRASAARILVATDVAARGLDIPSVSLVINFGVPRNPDDYVHRVGRTARAGREGEAVT 473

Query: 348 LVAKEDIKHIDAIEKLIEKKVDW 370
           LV + D++ + AIE  + +K++ 
Sbjct: 474 LVGQRDVQLVLAIEDRVGRKMEE 496


>gi|153801803|ref|ZP_01956389.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae MZO-3]
 gi|124122637|gb|EAY41380.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae MZO-3]
          Length = 428

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 124/374 (33%), Positives = 196/374 (52%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A+  A   +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 23  MSFSSLALSADLIQALPKA-ITEPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++   + G    L    L GG+    Q   L 
Sbjct: 82  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKAEQQNALA 137

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G  L     + V+DEADR+LDMGF P +Q + S     RQT
Sbjct: 138 ENPNILVATTGRLFDLTQSGLRLNRVTTL-VLDEADRLLDMGFWPQVQALASQTASVRQT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++            +  +      
Sbjct: 197 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 256

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK GT Q+++
Sbjct: 257 QW---PQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQTQREAALAEFKNGTTQVLI 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 314 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAI 373

Query: 361 EKLIEKKVDWLNGD 374
             L ++++   N D
Sbjct: 374 RTLTQRQLPVQNLD 387


>gi|153803281|ref|ZP_01957867.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-3]
 gi|153803543|ref|ZP_01958129.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-3]
 gi|124120924|gb|EAY39667.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-3]
 gi|124121185|gb|EAY39928.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-3]
          Length = 406

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 124/374 (33%), Positives = 196/374 (52%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A+  A   +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 1   MSFSSLALSADLIQALPKA-ITEPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++   + G    L    L GG+    Q   L 
Sbjct: 60  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKAEQQNALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G  L     + V+DEADR+LDMGF P +Q + S     RQT
Sbjct: 116 ENPNILVATTGRLFDLTQSGLRLNRVTTL-VLDEADRLLDMGFWPQVQALASQTASVRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++            +  +      
Sbjct: 175 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK GT Q+++
Sbjct: 235 QW---PQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQTQREAALAEFKNGTTQVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAI 351

Query: 361 EKLIEKKVDWLNGD 374
             L ++++   N D
Sbjct: 352 RTLTQRQLPVQNLD 365


>gi|326772300|ref|ZP_08231585.1| ATP-dependent RNA helicase [Actinomyces viscosus C505]
 gi|326638433|gb|EGE39334.1| ATP-dependent RNA helicase [Actinomyces viscosus C505]
          Length = 540

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 123/390 (31%), Positives = 202/390 (51%), Gaps = 7/390 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+   +   +   G+  P PIQ  T+P  L   DV G  +TG+GKT +F LP++ 
Sbjct: 24  TFAELGVDSDLAADLDARGFTAPFPIQAATLPDTLAGRDVLGRGRTGSGKTLAFSLPLVQ 83

Query: 62  I-LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
              ++ +AR   P  L+L PTRELA Q+A+  E   +  ++ V  + GG+  + Q K L+
Sbjct: 84  RLAQQDKARPGHPIGLVLAPTRELALQIAEVIEPLARVVDMDVTTIFGGVSAKPQEKALK 143

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G DV++  PGR+LD   +G + ++ +EI V+DEAD M D+GF+P ++ I    P   Q 
Sbjct: 144 AGVDVVVACPGRLLDLMGQGLVSLDEVEITVLDEADHMADLGFLPNVRRILRATPQRGQR 203

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT+ + +  + + FL +P +  V+  +S  + + H       + +K   + +    
Sbjct: 204 LLFSATLDNGVDTLVKEFLHDPLQHSVDPSTSPVDAMTHRVWMVADKTAKDGIVRRL--- 260

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   K     L   L + G     + GN+ Q +R + +  F  G + +MV
Sbjct: 261 -ASGEGQRILFTRTKHLARRLARKLVQAGIPAVELQGNMSQNARERAMRAFSTGQVHVMV 319

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+D+  V  V + D P   + Y+HR GRT RAG  G   TLV  E    +  +
Sbjct: 320 ATDIAARGIDVSGVELVVHVDPPAEHKAYLHRSGRTARAGAAGSVITLVLPEQKHDVQVL 379

Query: 361 EK--LIEKKVDWLNGDLSSLNPPLEKIDIA 388
            K   I   ++ +  D  +++  + ++  A
Sbjct: 380 LKKARIRADIERIRPDDDAVSALVGQVAEA 409


>gi|259013615|gb|ACV88438.1| AT04852p [Drosophila melanogaster]
          Length = 390

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 118/377 (31%), Positives = 192/377 (50%), Gaps = 18/377 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           +F D+ L  +++  +   G+ KP+ IQ + I   ++  DV   AQ+GTGKTA+F + +L 
Sbjct: 31  NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQ 90

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++         + LIL PTRELA Q+       G+   +     IGG       + LE 
Sbjct: 91  QIDTSIRE---CQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES 147

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   IQ++  ++P   Q +
Sbjct: 148 GCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 207

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +VS  F+++P  I V     T E I+  +V    +  K           
Sbjct: 208 LLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKL---------- 257

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  +       ++           F+V A+HG+++QR R  I+  F+ G+ ++++ 
Sbjct: 258 -----GTLCDLYDTLSITQSVIFCNTHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 312

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   +  +D + +  IE
Sbjct: 313 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIE 372

Query: 362 KLIEKKVDWLNGDLSSL 378
           +     ++ +  +++ L
Sbjct: 373 QFYHTTIEEMPANIADL 389


>gi|237653132|ref|YP_002889446.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
 gi|237624379|gb|ACR01069.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
          Length = 487

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 134/386 (34%), Positives = 208/386 (53%), Gaps = 10/386 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F  L LSP ++  +    Y   TPIQ  ++PL L  HD+   A+TG+GKTA+F LP+L
Sbjct: 30  LPFDGLPLSPAMLDTLRQLDYRAMTPIQAASLPLALAGHDLIAQAKTGSGKTAAFALPLL 89

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKL 119
             L+    R    + ++L PTRELA QV     +  +       L +  G P   Q   L
Sbjct: 90  ARLDV---RKLAVQAMVLCPTRELADQVTQEIRRLARFEANIKVLALCGGTPMRPQRDSL 146

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA V++ TPGRI+DH  RG L++  +  LV+DEADRMLDMGF   I  + S  P  RQ
Sbjct: 147 EHGAHVVVGTPGRIMDHLERGSLVLEALNTLVLDEADRMLDMGFHDDIAFVASRCPSERQ 206

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  + + +++  FL+ P+ +++    +  +  +  +   +    +  A L +  
Sbjct: 207 TLLFSATYPEGIARLAARFLREPQEVKLLEQHAHGKIRQRFYEVAHPARLEAVATLLR-- 264

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + + FCN ++   +L   L  +GF+  A++G ++QR R ++L  F   +  ++
Sbjct: 265 --HFRPVSTLAFCNTRQQCRDLVELLRARGFAALALNGEMEQRERDQVLIQFANRSCSVL 322

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +  V N DV    E +IHRIGRTGR    G A  L +  D + + +
Sbjct: 323 VATDVAARGLDIARLEAVINVDVTPDPEIHIHRIGRTGRGDEEGWALNLCSSADKRRVAS 382

Query: 360 IEKLIEKKVDW--LNGDLSSLNPPLE 383
           I + +  + +W  L+  +   N PL+
Sbjct: 383 IAQRMGFEPEWHALDELVEDANEPLQ 408


>gi|297736780|emb|CBI25981.3| unnamed protein product [Vitis vinifera]
          Length = 347

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 136/335 (40%), Positives = 203/335 (60%), Gaps = 2/335 (0%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM 72
           + ++  AG+  PTPIQ +T P+ LQ  D+  IA+TG+GKT  +++P   +L + R  V+ 
Sbjct: 3   IASIYSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRRRRNNVQN 62

Query: 73  -PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131
            P  ++L PTRELA Q+ D   K+G++  ++ A L GG    AQ K+L+RGADV++ TPG
Sbjct: 63  GPTVMVLAPTRELATQIQDETIKFGRSSRVSCACLYGGTSRNAQLKELDRGADVVVATPG 122

Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191
           R+ D     K+ +  I +LV+DEADRMLDMGF P I+ I + +P  RQTL+++AT   E+
Sbjct: 123 RLNDILESKKIDLGQISLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEV 182

Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251
           +K++ + L NP ++ + +    A               +K   L+Q+L+SQ+     IIF
Sbjct: 183 RKIAGDLLVNPVQVNIGSVDELAANKAITQYVEVVSPPEKQRRLEQILRSQERGSKVIIF 242

Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311
           C+ KK    L  S   + F    IHG+  Q  R  +L+ F+ G   ++VA+D+AARGLDI
Sbjct: 243 CSTKKLCDQLARS-IGRNFGAAVIHGDKSQVERDWVLNQFRSGKSPILVATDVAARGLDI 301

Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            D+  V N+D P   E+Y+HRIGRTGRAG  G A+
Sbjct: 302 KDIRVVINYDFPTGIEDYVHRIGRTGRAGATGWAW 336


>gi|299115740|emb|CBN74305.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 846

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 124/467 (26%), Positives = 208/467 (44%), Gaps = 13/467 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  L LS +    +   G+   T IQ+  IP  L   DV G A+TG+GKT +F++P++  
Sbjct: 50  FTALPLSQRTTRGLTGGGFKTMTEIQVAAIPHALAGRDVLGAAKTGSGKTLAFLVPLVEK 109

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + R         L++ PTREL+ Q+ +   ++GK++ L+  L+ GG     + +    
Sbjct: 110 LYRSRITFGDGLAALVISPTRELSLQIFEVLREFGKHHQLSAGLITGGKKEFREEQASVI 169

Query: 122 GADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             ++L+ TPGR +           + +++LV+DEADR+LDMGF   + +I   +P +RQT
Sbjct: 170 KMNILVATPGRLLQHLEQTPGFDPSLLQVLVLDEADRILDMGFRDQLNSILEYLPPSRQT 229

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238
           +LFSAT T  ++ ++   L+      V   +   E                 K   +   
Sbjct: 230 MLFSATQTKSIKDLARLSLRKGNVEYVAVRAGKDECATPAKLVQNYVVCRLDKKLDVLLG 289

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLE--KQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                     I+F      V      L   + G  V A+HG      R +I  +F     
Sbjct: 290 FIKTHLKSKMIVFFTSCAQVRFAFELLCALQPGMPVMALHGKCKHARRTQIYLDFVRRPG 349

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            +++A+D+AARGLD P V  V   D P  AE YIHR+GRT R    G+A  ++   + + 
Sbjct: 350 AVLLATDIAARGLDFPSVDWVIQVDAPEDAEGYIHRVGRTARYNSGGRALLMMLPSEEEG 409

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +     L   K + +     ++NP  EK+ +A     + +  +          +K+++S 
Sbjct: 410 V-----LAGLKPNNIPIKRLTINP--EKVRMAGSVGKKASALVASDPDKKRLAEKSFTSY 462

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLND 463
              + L  +++  +L +   E  A SLG         L K    +  
Sbjct: 463 VRAVQLMPNKQAFRLSELPLEEYAFSLGLAAAPRVPGLEKALVNIPS 509


>gi|298708839|emb|CBJ30797.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 819

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 125/367 (34%), Positives = 203/367 (55%), Gaps = 3/367 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  +GL   +   ++  GY  PTP+Q K++P+ L   DV  +A+TG+GKTA+F++P+L 
Sbjct: 11  SFQAMGLGQDLFRGIMAMGYKVPTPVQRKSLPVTLAGADVVVMARTGSGKTAAFLIPVLE 70

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     +    R++IL PTRELA Q      K  K  +L +ALL+GG   + Q   L  
Sbjct: 71  KLGSHSHK-MGARSIILSPTRELAVQTLTFARKMSKLKDLRMALLVGGDSMDKQFTALAD 129

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             D++I TPGR++ H     +  + ++E++V DEADR+ +MGF   ++ I   VP  RQ+
Sbjct: 130 NPDIIIATPGRLMHHLQEVPEFTLRSVEVVVFDEADRLFEMGFAEQLREIMRGVPEERQS 189

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSATM  +L + +   L++P  I ++T  S   T       T     K  ALL  L +
Sbjct: 190 LLFSATMPKQLVQFARAGLKDPVLIRLDT-ESKISTELSLAFLTCRSLDKPAALLFLLRE 248

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   I+F   + +   L   L++ G +   ++G +DQ +R   L  F++G  +L+V
Sbjct: 249 VIPEGDMTIVFVATRHHAEFLHELLKEAGTASSVVYGAMDQEARSIHLDKFRKGKTKLLV 308

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +D+AARG+D+P + +V N+  P   + ++HR+GR  R GR G A+++V  E+I H+  +
Sbjct: 309 VTDVAARGIDVPLLNNVINYAFPPAPKLFVHRVGRAARQGRTGTAYSIVDPEEIPHMLDL 368

Query: 361 EKLIEKK 367
              + +K
Sbjct: 369 HLFLGRK 375


>gi|126668612|ref|ZP_01739565.1| ATP-dependent RNA helicase, specific for 23S rRNA [Marinobacter sp.
           ELB17]
 gi|126626942|gb|EAZ97586.1| ATP-dependent RNA helicase, specific for 23S rRNA [Marinobacter sp.
           ELB17]
          Length = 457

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 135/387 (34%), Positives = 207/387 (53%), Gaps = 10/387 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL LS  +   ++  G+ +PT IQ + +P  L   DV  +A TG+GKTA+F + ++ 
Sbjct: 3   SFKDLELSAAMQANLVRLGFTEPTDIQTRALPHCLAGQDVIALAHTGSGKTAAFGIGLIE 62

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++  +  V+   +L+L PTRELA QVA    +  +  +    L +  G+    Q   L 
Sbjct: 63  HVKPKQFSVQ---SLVLCPTRELADQVAKALRELARARDNIKILTLCGGVSIGPQIGSLA 119

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA +++ TPGRI DH  +G L ++ +  +V+DEADRMLDMGF   ++NI S  P  RQT
Sbjct: 120 HGAHIVVGTPGRIADHLQKGTLKLDRVHTVVLDEADRMLDMGFQEAVENILSHAPAQRQT 179

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + ++K+S  F    +R  V+  + T +         Y     +       L 
Sbjct: 180 LLFSATWPESIRKLSAGF----QREPVDVRAQTEKMNSDIAEVFYEISGNQRTRAIVALL 235

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           SQ    + ++FC  K     L   L +QGFS  A+HG+++QR R  +L  F   + Q++V
Sbjct: 236 SQHQPTSCLVFCAMKHQCDELAAELSQQGFSALALHGDLEQRDRDSVLVRFANQSCQVLV 295

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N +     E + HRIGRTGRAG  G A TL +      I+ +
Sbjct: 296 ATDVAARGLDIKSLPLVVNAEPAGDPEIHTHRIGRTGRAGEQGLAVTLCSPSQGHKINRL 355

Query: 361 EKLIEKKVDWLNGD--LSSLNPPLEKI 385
           E      V W + D  ++++  P++ +
Sbjct: 356 ESERGATVIWGDSDPLMATVPKPMKPL 382


>gi|145517903|ref|XP_001444829.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412262|emb|CAK77432.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1127

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 125/393 (31%), Positives = 200/393 (50%), Gaps = 10/393 (2%)

Query: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67
             P++   +    +  PTPIQ    PL+L  +D+ G+A+TG+GKT  ++LP L  ++   
Sbjct: 107 FPPQIQNVIDGLNFRAPTPIQSVVFPLILSGYDLIGVAETGSGKTFGYLLPGLIQIKCQN 166

Query: 68  A------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                  R+  P  LIL PTREL  Q+A     + K  NLTVA   GG   + Q ++++R
Sbjct: 167 YGSNFRNRINGPEILILAPTRELVMQIAQQVSLFMKPNNLTVATAYGGQNRDQQAQQIKR 226

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
             D+L+  PGR+ D    G L ++ +  LVIDEADR+LDMGF   ++ I       RQT+
Sbjct: 227 NPDILVACPGRLKDFLQEGILDLSKVTYLVIDEADRLLDMGFEDDVRFIVQRTRQDRQTV 286

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
            FSAT    ++ +S +F            S+                ++K   L  +L  
Sbjct: 287 FFSATWPKAVRNLSLDFCAEDPIYVQVGRSNLTVNKNIDQEIICLYNNQKLQTLLDILDQ 346

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  +IF   + +   L   + ++G+   A+HGN  Q  R  I+  +K+G  +L+ A
Sbjct: 347 LKINDKVLIFAETRISCEQLSVDMTQEGYYAVALHGNKTQGQRDSIMECYKKGDTKLLCA 406

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA--KEDIKHIDA 359
           +DLA+RGLD+ D+  V N+D P   ++YIHRIGRTGRAGR G+A +  A  K+  +    
Sbjct: 407 TDLASRGLDVSDITVVINYDFPKYFDDYIHRIGRTGRAGRKGRAISFFAIGKDQPQMARE 466

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392
           + K    K++ +  D+ ++      I + ++ +
Sbjct: 467 LLKF--DKINKMKLDVQTMQDISNGIKLERNTN 497


>gi|296420816|ref|XP_002839964.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636172|emb|CAZ84155.1| unnamed protein product [Tuber melanosporum]
          Length = 593

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 122/401 (30%), Positives = 189/401 (47%), Gaps = 23/401 (5%)

Query: 1   MD-FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           M  F +  L P +   +  AGY  PTPIQ   IP +L+ HD+   AQTG+GKTA+F++P+
Sbjct: 144 MSIFDEAPLHPVMKGNIKLAGYEIPTPIQRYCIPAILEGHDLLSCAQTGSGKTAAFLIPI 203

Query: 60  --------------LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105
                           +       +  P  L++ PTRELA Q+ D   ++     L   +
Sbjct: 204 LSKLMGKASSLAAPRPVPGSTEPYIAQPLVLVVAPTRELATQIFDESRRFCYRSKLRPCV 263

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL-LMNNIEILVIDEADRMLDMGFI 164
           + GG     Q  +L++G D+L+ TPGR+ D   RG++  +  ++ +VIDEAD MLDMGF 
Sbjct: 264 VYGGADSATQRMELKKGCDILVGTPGRLADFIERGRILSLRRLKFVVIDEADEMLDMGFE 323

Query: 165 PYIQNITS-----LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219
           P I+ +            +Q L+FSAT    ++K++ +FL +           +      
Sbjct: 324 PQIRKLLQSSGNANEDDDQQVLMFSATFQKAIRKLARDFLSDDFVHIKVGRIGSTHENIT 383

Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
             V    +  KK A+              +IF N K+   +L   L        +IHG+ 
Sbjct: 384 QRVLWVDELRKKEAIYDL--LCTAPPARTLIFVNHKRVADSLDDYLYNLKLPTTSIHGDR 441

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339
            QR R   +  F+ G   +M+A+ +AARGLDI +V HV N+D+    + YIHRIGRT R 
Sbjct: 442 TQREREDAILAFRSGKCPIMIATAVAARGLDIKNVMHVINYDMVQNIDEYIHRIGRTARI 501

Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNP 380
           G  G A +     +      + K++ +    +   L    P
Sbjct: 502 GNRGLATSFYNSSNEGIASDLVKVLLESSQEIPEFLEPYRP 542


>gi|153827809|ref|ZP_01980476.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           623-39]
 gi|148876654|gb|EDL74789.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           623-39]
          Length = 428

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 196/374 (52%), Gaps = 9/374 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A+  A   +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 23  MSFSSLALSADLIQALPKA-ITEPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 81

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV++   + G    L    L GG+    Q   L 
Sbjct: 82  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKAEQQNALA 137

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G  L     + V+DEADR+LDMGF P +Q + S     RQT
Sbjct: 138 ENPNILVATTGRLFDLTQSGLRLNRVTTL-VLDEADRLLDMGFWPQVQALASQTATVRQT 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++            +  +      
Sbjct: 197 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 256

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK G+ Q+++
Sbjct: 257 QWP---QVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLI 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 314 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAI 373

Query: 361 EKLIEKKVDWLNGD 374
             L ++++   N D
Sbjct: 374 RTLTQRQLPVQNLD 387


>gi|329116579|ref|ZP_08245296.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus parauberis
           NCFD 2020]
 gi|326906984|gb|EGE53898.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus parauberis
           NCFD 2020]
          Length = 447

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 117/380 (30%), Positives = 185/380 (48%), Gaps = 12/380 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F D      +  A+    + +PT +Q K IP+V    D+ G ++TG+GKT +F+LP+ 
Sbjct: 1   MSFKDYNFKQYIQDALDAIKFTEPTDVQKKLIPIVNSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG---GIPFEAQNK 117
             L++  A+V+    LI  P+RELA Q+ D  ++   + +  + L+             K
Sbjct: 61  EKLDEDLAQVQ---VLITAPSRELATQIFDAAKQIASHSDKEIRLVNYVGGTDKLRQIEK 117

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
                  +++ TPGRI D    G L ++     V+DEAD  +DMGF+  +  I S +P  
Sbjct: 118 LKVSQPHIVVGTPGRIYDLVKSGDLEIHKATTFVVDEADMTMDMGFLDTVDKIASALPKA 177

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +LQ   + +L NP   ++ T +  A+TI        +   +       
Sbjct: 178 VQILVFSATIPQKLQPFLKKYLTNPVIEQIKTQTVIADTI---ENWLVSTKGRDNNSQIL 234

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +         ++F N K+    L   L   G  V  IHG +  R R +I++  K+   Q
Sbjct: 235 SILQNMNPYLAMLFVNTKERADELHSFLVANGLKVAKIHGGVPPRERKRIMNQVKKLDFQ 294

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  V H+ N  +P     ++HR+GRTGR G  G A TL    D   I
Sbjct: 295 YIVATDLAARGIDIEGVSHIINDAIPQDLSFFVHRVGRTGRNGMSGTAITLYKPSDDSDI 354

Query: 358 DAIEKLIEKKVDWLNGDLSS 377
             +EKL    + ++   L +
Sbjct: 355 KELEKL---GIQFVPKVLKN 371


>gi|195589286|ref|XP_002084383.1| GD12861 [Drosophila simulans]
 gi|194196392|gb|EDX09968.1| GD12861 [Drosophila simulans]
          Length = 690

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 102/429 (23%), Positives = 191/429 (44%), Gaps = 16/429 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L L   ++  +    +V PT IQ   IP+ L   D+   +++GTGKT  +V+ ++ 
Sbjct: 26  TFEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALANMDLIIQSKSGTGKTLIYVIAVVQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
             +    R   P  +I+ PTRELA QV D F +  K++         G    A+++    
Sbjct: 86  SFQPNMNR---PHAMIVVPTRELAIQVQDTFVQLCKSFRDFKCSAFIGGTEVAKDRSRMN 142

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
            + V+I TPGR+L  +    L ++ + +LV+DEAD++     + +  +         + +
Sbjct: 143 ESRVIIGTPGRLLHLYENRVLDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEAMPKNRQI 202

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ---- 237
           +  +   D+        + +   +  N+  +T       FV    Q +     ++     
Sbjct: 203 IACSATYDQDLDERLAKVMDKPMLISNSERATVLLGIRQFVYELPQQNNSVEEMRLKLQI 262

Query: 238 --LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              + SQ   +  IIF + +    +  + L   G     I G ++Q  R+ +   ++  T
Sbjct: 263 LGQIFSQLPYEQAIIFASSQMRADSYKNYLTASGVDCHLISGAMEQSERLHVFEGYRNFT 322

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDI 354
           ++++VA+DL ARG+D P    V N D P     Y+HRIGR GR G  G A T + +K++ 
Sbjct: 323 MRILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRFGSKGIAITFISSKKES 382

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN---HARKNNP---IPQKSTGFDR 408
           +    + K I      L      +       D  ++N   + ++ NP   +P ++    +
Sbjct: 383 QRFREMSKKIATAWSVLEFPKEPMPNEFNFWDFEKYNFGYYIKEENPLQEMPMENKRILK 442

Query: 409 RKKNYSSQK 417
           R + Y+ ++
Sbjct: 443 RIRKYAKKQ 451


>gi|168002750|ref|XP_001754076.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694630|gb|EDQ80977.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 655

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 98/438 (22%), Positives = 171/438 (39%), Gaps = 24/438 (5%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DLGLS +V+ AV + G ++PT +Q   IP VL   +V   + TG+GKT +++LP++  
Sbjct: 183 FNDLGLSDEVMEAVKELGLMEPTEVQAIGIPTVLAGENVVMASHTGSGKTLAYLLPIVQA 242

Query: 63  LEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
           L +         R R PR ++L PTRELA QV    +    +     A++ GG   + Q 
Sbjct: 243 LRRDEAASGKFTRARRPRAVVLCPTRELAEQVFRVAKSLCHHARFRAAMVGGGSRMKTQE 302

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
             L +  D+++ TPGR+L H  +G +   +++ +V+DEAD M D GF   ++   + +  
Sbjct: 303 DSLNKAIDLIVATPGRLLMHIEQGNMAYGDLKYVVLDEADTMFDKGFGVEVRKFLNPLRN 362

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
             +        T  +              +        E      + T   + K      
Sbjct: 363 RSRQPEGEPFQTVLV---------TATITKAVQSLLDEEFPGIKHIYTSTLHKKILEPEL 413

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
              +      N +  C    + ++   +              ++   + K         +
Sbjct: 414 AKGKRVMVFCNTLGSCRAVDHFLSERGTTSVNYHGAIPADERVENLEKFKNADEDSLPAL 473

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
                +      +      HV NFD P    +Y+HR GRT R GR G   +LV K D   
Sbjct: 474 VCTDLAARGLDLV----CDHVINFDFPLNPIDYLHRTGRTARMGRKGMVTSLVTKRDQTL 529

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
              +E+ + K        L  L    EK+   +     +      +  G   +  N    
Sbjct: 530 AIQLEEAMRK-----GESLEGLTNSREKLANIKKKEIEEKRKAKAQKLGVSLKYSNTQGS 584

Query: 417 KSHIPLKESEKISKLQQD 434
           K+   L+ +   +++  +
Sbjct: 585 KTKSSLRGTRGSARVSNE 602


>gi|259908378|ref|YP_002648734.1| ATP-dependent RNA helicase DbpA [Erwinia pyrifoliae Ep1/96]
 gi|224964000|emb|CAX55505.1| ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
 gi|283478319|emb|CAY74235.1| ATP-dependent RNA helicase dbpA [Erwinia pyrifoliae DSM 12163]
          Length = 459

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 132/405 (32%), Positives = 213/405 (52%), Gaps = 16/405 (3%)

Query: 3   FADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L    +  + + GY+  TP+Q +++P +L   DV   A+TG+GKTA+F L ++ 
Sbjct: 4   FSTLTQLPASQIDNLNELGYLAMTPVQAESLPAILAGRDVRAQAKTGSGKTAAFGLGVMH 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLE 120
            ++  +    + + L+L PTRELA QV     +  +  +    L + G  P  AQ   L 
Sbjct: 64  RVDASQ---YVTQALVLCPTRELADQVTKELRRLARFTSNIKILTLCGGQPVGAQRDSLL 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGRILDH  R  L ++ I  LV+DEADRML+MGF   I  I S  P  RQT
Sbjct: 121 HAPHIVVGTPGRILDHLKRETLKLDAISTLVLDEADRMLEMGFREDIDTIISHSPQARQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT    + +      Q+ +R  +   +     +       Y   +++       L 
Sbjct: 181 LLFSATWPQAIAQ----ISQSIQRDPLTIETGDVSDLPAIEQTFYEAGAREKLTALIGLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S+    + ++FCN K+    + ++L+K   S   +HG+++QR R ++L  F  G+ +++V
Sbjct: 237 SERQPSSCVVFCNTKRECDEIAYALDKAQISAQPLHGDLEQRERDRMLIRFANGSCRVLV 296

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V N+ +    E ++HRIGRT RAG+ G A + VA +++    A+
Sbjct: 297 ATDVAARGLDIKALAMVVNYQLSFDPEVHVHRIGRTARAGQEGCAVSFVAPDEMIRAHAL 356

Query: 361 EKLIEKKVDWLNGDLSSLN-----PPLEKIDIAQHNHARKNNPIP 400
           E  +++K+ W N  LS+L      P L ++        RK    P
Sbjct: 357 EDYLQQKLVWCN--LSALKAVAARPLLAEMVTVSLEGGRKAKIRP 399


>gi|333004456|gb|EGK23986.1| ATP-independent RNA helicase dbpA [Shigella flexneri VA-6]
          Length = 455

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 125/370 (33%), Positives = 197/370 (53%), Gaps = 11/370 (2%)

Query: 3   FADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           F+ L  L P  +  + + GY+  TP+Q   +P +L   DV   A+TG+GKTA+F L +L 
Sbjct: 4   FSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG-GIPFEAQNKKLE 120
            ++     +     L+L PTRELA QVA    +  +    T  L +  G PF  Q   L+
Sbjct: 64  QIDAS---LFQTLALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ 120

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+LDH  +G + ++ +  LV+DEADRMLDMGF   I ++    P +RQT
Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT 180

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT  + +           +R  +     + + +       Y   SK    L Q L 
Sbjct: 181 LLFSATWPEAIAA----ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLL 236

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
           S     + ++FCN KK+   +C +L +   S  ++HG++    R + L  F  G+ +++V
Sbjct: 237 SLHQPSSCVVFCNTKKDCQAVCDALNEVEQSALSLHGDL--EQRDQTLVRFANGSARVLV 294

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  +  V NF++    E ++HRIGRT RAG  G A +  A E+ +  + I
Sbjct: 295 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANII 354

Query: 361 EKLIEKKVDW 370
             +++ K++W
Sbjct: 355 SDMLQIKLNW 364


>gi|290562595|gb|ADD38693.1| Spliceosome RNA helicase BAT1 [Lepeophtheirus salmonis]
          Length = 428

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 94/378 (24%), Positives = 164/378 (43%), Gaps = 4/378 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P+V+ A++D G+  P+ +Q ++IP  +   DV   A++G GKTA FV+  L  
Sbjct: 46  FRDFILKPEVLKAIVDCGFEHPSEVQHESIPQAILGMDVLCQAKSGMGKTAVFVIATLQQ 105

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+      R+             ++  + F K+     + V      +  +      +  
Sbjct: 106 LDPEETHTRVLVLCHTRELAFQISKEYERFSKFIPALKVGVFFGGVPLKKDMDLLSKQTI 165

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
              +      +     R   L N    ++ +    +  +     +Q I  + P  +Q ++
Sbjct: 166 HIAVGTPGRLLDLIRKRALKLDNVKHFIIDECDKMLDTLDMRKDVQEIFKMTPKQKQVMM 225

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATM+ E++ V +NF+Q+P  I ++  S                 +K   L       +
Sbjct: 226 FSATMSKEIRPVCKNFMQDPLEIFIDNDSKLTLHGLRQHYVKVKDNAKNRKLFDL--LDE 283

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF    +  + L   L  Q F    IH  + Q+ R+     FK    +++VA+
Sbjct: 284 LEFNQVIIFVKSVQRCIALTKLLLTQNFPAIEIHRQMTQQQRLDNYQAFKNFHKRVLVAT 343

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIE 361
           +L  RG+DI  V  VFN+D+P  ++ Y+HR+ R GR G +G A T V+ E D   ++ ++
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTNGLAMTFVSDESDATVLNDVQ 403

Query: 362 KLIEKKVDWLNGDLSSLN 379
                 +  L  D+SSL 
Sbjct: 404 NRFVVNISELE-DVSSLE 420


>gi|332520339|ref|ZP_08396801.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332043692|gb|EGI79887.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 373

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 110/374 (29%), Positives = 192/374 (51%), Gaps = 9/374 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60
            F DLG+    + ++ +     PT IQ + IP++++   D  G+AQTGTGKTA++ LP+L
Sbjct: 3   TFRDLGIHKNYIKSLKELDIKTPTEIQEQAIPILIKSKVDFVGLAQTGTGKTAAYGLPVL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG--IPFEAQNKK 118
             ++  +  V+    LI+ PTREL  Q+     K+ K  +  + +         + Q   
Sbjct: 63  HKVDANKKSVQG---LIIAPTRELVQQIKKQLFKFTKYNDKKIFVEGVYGGEKIDIQISN 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L+R   +++ TPGR++D  ++  + + +I  LV+DEAD ML MGF   +  I      + 
Sbjct: 120 LKRPTHIIVATPGRLVDLLDKNIIDLKHINTLVLDEADEMLSMGFKKDLNIILDATTKSA 179

Query: 179 QTLL-FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +    FSATM  +L+ +   ++           +S                 K   +++ 
Sbjct: 180 RNTWLFSATMPTDLKAIVNRYISKDAARVEVNRNSIVNANISHHFVQTPIVDKAHTIMRL 239

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           L    D    GIIFC  K     L   L+K+GF+V A+ G++ Q+ R K++  FK   +Q
Sbjct: 240 LDDRADE--RGIIFCRTKAGTQALKQQLQKEGFNVDALEGDMTQKERDKVMRAFKNTNLQ 297

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           +++++D++ARG+D+ ++  + +  +P   E Y HR GRT RAG+ G++  LV   ++K +
Sbjct: 298 ILISTDVSARGIDVNNLAFIIHHQLPEHIEYYTHRSGRTARAGKKGESIALVLPSELKKV 357

Query: 358 DAIEKLIEKKVDWL 371
             +EK +  K+  L
Sbjct: 358 AELEKALGIKIKEL 371


>gi|259145161|emb|CAY78425.1| Sub2p [Saccharomyces cerevisiae EC1118]
          Length = 446

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 91/375 (24%), Positives = 154/375 (41%), Gaps = 5/375 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L P++  A++D G+  P+ +Q  TIP  +   DV   A++G GKTA FVL  L  
Sbjct: 64  FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 123

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ--NKKLE 120
           L+     V +                   F KY  +    V      I  +A+    K  
Sbjct: 124 LDPVPGEVAVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDT 183

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+            +   L +    ++ +    + ++     +Q I    P  +Q 
Sbjct: 184 APHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRDKQV 243

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++FSAT++ E++ +   FLQNP  I V+  +         +     +  K        L 
Sbjct: 244 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNR--KLAQLL 301

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF         L   L    F    +HG++ Q  R+     FK+   ++ V
Sbjct: 302 DDLEFNQVIIFVKSTIRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICV 361

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359
           ++D+  RG+DI  +    N+D+ N A+ Y+HR+GR GR G  G A + V +KED + +  
Sbjct: 362 STDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDEEVLAK 421

Query: 360 IEKLIEKKVDWLNGD 374
           I++  + K+     +
Sbjct: 422 IQERFDVKIAEFPEE 436


>gi|322802956|gb|EFZ23093.1| hypothetical protein SINV_01312 [Solenopsis invicta]
          Length = 1110

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 122/392 (31%), Positives = 206/392 (52%), Gaps = 15/392 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F   GL   ++  + ++GY +PTP+Q   IP+++   D+   AQTG+GKTA+FVLP+L 
Sbjct: 308 SFDQSGLRTDLLQNIKESGYTEPTPVQKYAIPIIMSGRDLMACAQTGSGKTAAFVLPILH 367

Query: 62  ILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115
           +L + +           P  +I+  T +LA Q+   F+K+  N  + V  +       + 
Sbjct: 368 LLLENQRDLVKTGSFCEPHAIIISSTCKLALQIYTQFKKFSLNSVIRVESISERTSSMSS 427

Query: 116 N--KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
               K+  G  VLI TPGR+LD   RGK++++++   V+DE DRMLDMGF+P I+ I   
Sbjct: 428 YLTNKVCNGCHVLIATPGRLLDFIERGKVVLSSLRFFVLDEPDRMLDMGFLPDIEKIMDH 487

Query: 174 VPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229
                   R  L+FSAT + ++QK+++ FLQN   +EV         ++  F     Q +
Sbjct: 488 ETMVATEKRHMLMFSATFSKKIQKLADRFLQNYLFLEVRIVGDICADVQQNFYQISGQSN 547

Query: 230 KKCALLQQLLQSQD--TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287
           +   L++ L +     ++++ ++F +QK     +   L ++ +    I  +  QR R + 
Sbjct: 548 ELELLIELLGKQNKLGSIQDTLVFVSQKIQTDMIVSFLSERNYLSAHIDEDGLQREREET 607

Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347
           L +FK+G + ++V + LAAR LDI DV HV NF++P     Y+ RIGR    G  GKA +
Sbjct: 608 LFDFKQGKMPILVLTTLAARSLDIKDVSHVINFNLPETINEYVDRIGRISTVGNCGKATS 667

Query: 348 LVAKE-DIKHIDAIEKLIEKKVDWLNGDLSSL 378
               + D+     + K++++    +   L S+
Sbjct: 668 FFVPKFDMPLAGDLIKILKQAGQVVPDWLESI 699



 Score = 48.3 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 310  DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH-GKAFTLVAKE-DIKHIDAIEKLIEKK 367
             I +V HV NF +P   + YI R+ RT R G   GKA +      D+   + + +++++ 
Sbjct: 1030 HIKNVSHVINFSLPQSIDEYIDRVRRTSRVGNQLGKATSFFVPAFDVPLAEDLIQILKQA 1089

Query: 368  VDWLNGDLSSL 378
               +   L S+
Sbjct: 1090 GQVVPDWLESI 1100



 Score = 40.2 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 325 RAENYIHRIGRTGRAGRH-GKAFTLVAK-EDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
             + YI RI RT R G   GKA +      D   +  + K++++    +   L S++
Sbjct: 835 TIDEYIDRISRTSRVGNQLGKATSFFDPTFDRSLVGDLIKVLKQAGQKIPNWLESIS 891


>gi|302508817|ref|XP_003016369.1| hypothetical protein ARB_05768 [Arthroderma benhamiae CBS 112371]
 gi|291179938|gb|EFE35724.1| hypothetical protein ARB_05768 [Arthroderma benhamiae CBS 112371]
          Length = 481

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 97/399 (24%), Positives = 193/399 (48%), Gaps = 19/399 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +LGL   V+  +    + +P+ IQ + +PL++     ++ G +Q+GTGKTA+FVL +
Sbjct: 81  SFEELGLDEAVLRGLRQMRFSRPSKIQERALPLLMSNPPQNMIGQSQSGTGKTAAFVLNV 140

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ LE     + +P+ LIL P+RELA Q+    +  G    +    +   +P E    + 
Sbjct: 141 LSRLEVTPEMINVPQALILAPSRELARQIVGVVQVMG--SFIEGLKIATLVPMETNRNQP 198

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              + V+            R     +   +++ +  + +   G       + S +P   Q
Sbjct: 199 VEASLVVGTPGTVQDFIRKRLFNTQHVKVLVLDEADNMLDQQGLGDQCIRMKSSLPKNTQ 258

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT  D + + +  F  N  ++ +     T E I+  ++   +   K   L++   
Sbjct: 259 IVLFSATFPDSVVRYAHKFAPNANQLTLKHEELTVEGIKQLYLDCDSTEHKYEILVK--F 316

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+ + IIF   + + V +   + ++G +V ++ G ++ + R +++ +F++GT +++
Sbjct: 317 YGLLTIGSSIIFVKTRASAVEIERRMVEEGHTVVSLTGGVEGQKRDEVIDSFRKGTAKVL 376

Query: 300 VASDLAARGLDIPDVGHVFNFDVPN-----------RAENYIHRIGRTGRAGRHGKAFTL 348
           + +++ ARG+D+  V  V N+D+P              + Y+HRIGRTGR GR G A + 
Sbjct: 377 ITTNVLARGIDVQTVSMVINYDIPELHAPGAGERIADPQTYLHRIGRTGRFGRVGVAVSF 436

Query: 349 VA-KEDIKHIDAIEKLIEKKVDWLNG-DLSSLNPPLEKI 385
           V+ KE+   +  I+K     +  ++  D   +   ++K+
Sbjct: 437 VSNKEEWTMLMDIQKYFGTDIMRVDSRDWDEVEDVVKKV 475


>gi|21224259|ref|NP_630038.1| DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
 gi|256784656|ref|ZP_05523087.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
 gi|289768540|ref|ZP_06527918.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
 gi|2815333|emb|CAA16457.1| probable DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
 gi|289698739|gb|EFD66168.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
          Length = 498

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 132/431 (30%), Positives = 211/431 (48%), Gaps = 11/431 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +  +++ A+   G   P PIQ  T+P  L   D+ G  +TG+GKT +F L +L  
Sbjct: 71  FADLDMPGELLAALGQQGVTVPFPIQAATLPNSLAGRDIMGRGRTGSGKTLAFGLALLAR 130

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  L+L PTRELA QV D    Y ++  L +A ++GG+    Q   L  G
Sbjct: 131 TAGRRAEPRQPLGLVLVPTRELAQQVTDALTPYARSVKLRLATVVGGMSIGRQASALRGG 190

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+V++ TPGR+ D  +RG   +N + + V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 191 AEVVVATPGRLKDLIDRGDCRLNQVSVTVLDEADQMADMGFMPQVTALLDQVRPEGQRML 250

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  +    T+EH  +  +              +  
Sbjct: 251 FSATLDRNVDLLVRRYLSDPVVHSVDPSAGAVTTMEHHVLHVHGADK-----HAATTEIA 305

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F + K  V  L   L   G    A+HG   Q  R + L+ FK G + ++VA+
Sbjct: 306 ARDGRVIMFLDTKHAVDRLTRDLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVAT 365

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           ++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV     + +  +  
Sbjct: 366 NVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRGMVRL-- 423

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR-RKKNYSSQKSHIP 421
           + E  +      +S  +  L +I  AQ   A    P+   +   +R +K+  +S+    P
Sbjct: 424 MSEAGIRPQTTQVSPGDEALSRITGAQ---APTGIPVVITAPATERPKKRGATSRGRRRP 480

Query: 422 LKESEKISKLQ 432
              + +   L+
Sbjct: 481 ASATRRTPALK 491


>gi|299532536|ref|ZP_07045926.1| hypothetical protein CTS44_17127 [Comamonas testosteroni S44]
 gi|298719483|gb|EFI60450.1| hypothetical protein CTS44_17127 [Comamonas testosteroni S44]
          Length = 700

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 120/413 (29%), Positives = 199/413 (48%), Gaps = 48/413 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHD------VCGIAQTGTGKTASF 55
           F +LGL+P+++ AV D GY +PT +Q++ IPL + +  D      +   +QTG+GKTA+F
Sbjct: 53  FVELGLAPELIQAVTDLGYTQPTAVQLQAIPLAMGEGADADGFIDLMVSSQTGSGKTAAF 112

Query: 56  VLPMLT---------------------------------------ILEKGRARVRMPRTL 76
           +LP+L                                               +  +P  L
Sbjct: 113 LLPVLHTLIKQRAVADAAAKAEFERLCAEAAAKGEPAPKRNKRKDPTNARNFKAAVPGAL 172

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           +L PTRELA QVA +  +  K+        + G           + AD+++ TPGR+LD 
Sbjct: 173 VLCPTRELAQQVAHDAIELVKHCRGIRIANVVGGIPYQLQIAKLQNADLVVATPGRLLDL 232

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
               ++ ++ ++ LV+DEADRMLD+GF   +  +  L    +QT++FSAT    +Q+++ 
Sbjct: 233 QRSMQIKLDKVQFLVVDEADRMLDLGFSDDLAEVNQLTAERKQTMMFSATFAPRIQQLAM 292

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--QLLQSQDTMKNGIIFCNQ 254
             + +          +T +                    +         ++   I+F + 
Sbjct: 293 RVMHDGGANVKKITIATPQEKHANIKQALFWADNMQHKRKLLDHWLRDSSINQAIVFAST 352

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           +     L + L++ GFS  A+HG + Q  R + L   + G +Q++VA+D+AARG+D+P +
Sbjct: 353 QVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPTI 412

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
            HVFN+ +P +AE+Y HRIGRTGRAGR G A T     D + +  IE    ++
Sbjct: 413 THVFNYGLPMKAEDYTHRIGRTGRAGREGVAVTFAEFRDRRRVFDIEGYTRQQ 465


>gi|264677044|ref|YP_003276950.1| hypothetical protein CtCNB1_0908 [Comamonas testosteroni CNB-2]
 gi|262207556|gb|ACY31654.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 690

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 120/413 (29%), Positives = 199/413 (48%), Gaps = 48/413 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHD------VCGIAQTGTGKTASF 55
           F +LGL+P+++ AV D GY +PT +Q++ IPL + +  D      +   +QTG+GKTA+F
Sbjct: 43  FVELGLAPELIQAVTDLGYTQPTAVQLQAIPLAMGEGADADGFIDLMVSSQTGSGKTAAF 102

Query: 56  VLPMLT---------------------------------------ILEKGRARVRMPRTL 76
           +LP+L                                               +  +P  L
Sbjct: 103 LLPVLHTLIKQRAVADAAAKAEFERLCAEAAAKGEPAPKRNKRKDPTNARNFKAAVPGAL 162

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           +L PTRELA QVA +  +  K+        + G           + AD+++ TPGR+LD 
Sbjct: 163 VLCPTRELAQQVAHDAIELVKHCRGIRIANVVGGIPYQLQIAKLQNADLVVATPGRLLDL 222

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
               ++ ++ ++ LV+DEADRMLD+GF   +  +  L    +QT++FSAT    +Q+++ 
Sbjct: 223 QRSMQIKLDKVQFLVVDEADRMLDLGFSDDLAEVNQLTAERKQTMMFSATFAPRIQQLAM 282

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--QLLQSQDTMKNGIIFCNQ 254
             + +          +T +                    +         ++   I+F + 
Sbjct: 283 RVMHDGGANVKKITIATPQEKHANIKQALFWADNMQHKRKLLDHWLRDSSINQAIVFAST 342

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           +     L + L++ GFS  A+HG + Q  R + L   + G +Q++VA+D+AARG+D+P +
Sbjct: 343 QVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPTI 402

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
            HVFN+ +P +AE+Y HRIGRTGRAGR G A T     D + +  IE    ++
Sbjct: 403 THVFNYGLPMKAEDYTHRIGRTGRAGREGVAVTFAEFRDRRRVFDIEGYTRQQ 455


>gi|315182608|gb|ADT89521.1| DEAD-box ATP dependent DNA helicase [Vibrio furnissii NCTC 11218]
          Length = 412

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 135/424 (31%), Positives = 215/424 (50%), Gaps = 12/424 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS +++ A+      +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 1   MPFSTLSLSSELIHALPK-DVKQPTDIQALAIPELLAGKDVLALANTGSGKTLAYALPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L +   +  +    IL PTRELA QV++   + G+ + L    L GG+    Q + L 
Sbjct: 60  DKLNENPQQKAL----ILVPTRELAIQVSEAINQVGQAFELNAVCLCGGVDKALQQQALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               + + T GR++D  N G  L +    LV+DEADR+LDMGF P +QNI       RQT
Sbjct: 116 TNPHIFVATTGRLVDLVNHGLDLSHI-HTLVLDEADRLLDMGFWPDVQNIAMQTANQRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT ++ L++ ++  +  PK++  +  +ST + I             K  +      
Sbjct: 175 AMFSATFSEALKEKAKQLMHAPKQVAAHQENSTNQDITETLFLVNKGSKTKALIEL---I 231

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+     ++F   K+N   L   L K G S  A+HGN  Q  R + L+ FK G + +++
Sbjct: 232 QQNAWTRVLVFIGAKENADGLAKKLNKAGVSTTALHGNKSQDEREQALAQFKSGQVNVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG  G A +LV   ++  ++AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVAMSLVCHGEMDALNAI 351

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
             L ++ +     DL+   P  +K    +   A ++    +++      K+     K   
Sbjct: 352 RHLTQRALPV--QDLAGF-PVTDKPSTGESKRAPRDKKANRRTNNKSSIKQFQGKVKRPA 408

Query: 421 PLKE 424
           P  +
Sbjct: 409 PKSK 412


>gi|311744584|ref|ZP_07718384.1| ATP-dependent RNA helicase RhlE [Aeromicrobium marinum DSM 15272]
 gi|311312203|gb|EFQ82120.1| ATP-dependent RNA helicase RhlE [Aeromicrobium marinum DSM 15272]
          Length = 413

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 122/359 (33%), Positives = 187/359 (52%), Gaps = 5/359 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F+   L   V+ A+       PTPIQ   IP  L  HDV G A+TG+GKT +F LP+L  
Sbjct: 13  FSSFDLPRPVLSALASRQLDTPTPIQDAVIPDALAGHDVLGKARTGSGKTLAFGLPVLVR 72

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L  G+ R + PR LIL PTRELA QV D    +    NL++AL+ GG P   Q   +  G
Sbjct: 73  LSGGQRRRKAPRGLILLPTRELATQVRDALVPFADRLNLSMALVYGGTPINRQISAVTAG 132

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR+ D   R  L ++ IE++ +DEAD + D+GF   I  I +  P   Q LL
Sbjct: 133 VDLVIATPGRLGDLLERRALTLDAIEVIALDEADHLCDLGFYKPIDAILAKTPQGAQKLL 192

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+  ++ ++    L   +R EV++       +       +   +++   ++      
Sbjct: 193 LSATLDGDVDRLVRRHLPVHRRHEVDSAEDAPADM-----THHLVVTRREDRVRVARDLI 247

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F   K     L   L   G +   +HG+++Q  R + L+ F+ GT  ++VA+
Sbjct: 248 AGEDRSIVFTRTKHGARRLAKQLSTAGLTAVDLHGDLNQNQRERNLARFRNGTADVIVAT 307

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           D+AARG+ +  +G V ++D P   + + HR GRT RAG  G   TL   ED++ + A++
Sbjct: 308 DVAARGIHVDGIGLVVHYDPPAEHKAFTHRSGRTARAGESGIVVTLATPEDLRDVVAMQ 366


>gi|156094444|ref|XP_001613259.1| ATP-dependent RNA helicase [Plasmodium vivax SaI-1]
 gi|148802133|gb|EDL43532.1| ATP-dependent RNA helicase, putative [Plasmodium vivax]
          Length = 1341

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 126/434 (29%), Positives = 208/434 (47%), Gaps = 10/434 (2%)

Query: 3    FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
            F   GL  K++  +    + K   IQ++TIP ++   DV  IA+TG+GKT S++ P++  
Sbjct: 671  FYQCGLPSKILPILERKQFKKMFGIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPLIRH 730

Query: 63   --LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
               +        P  +IL PTREL+ QV      Y +  NL +  + GG     Q   L+
Sbjct: 731  VLHQPPLRNNDGPIAIILTPTRELSKQVKSEARPYCQAVNLRILAVYGGSNIGTQLNTLK 790

Query: 121  RGADV---LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            RG ++          IL   N     +N +  +V+DEADR+LD+GF   I NI +     
Sbjct: 791  RGVEILVGTPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIHNILNNCRKD 850

Query: 178  RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            +QT + SAT  + +Q +++  L  P  I V     T             +  KK   L +
Sbjct: 851  KQTAMISATFPNYIQNLAKKLLYKPIEIIVGEKGKTNNN--IYQFVEVLEGGKKIYRLLK 908

Query: 238  LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            LL    +    +IF N++     L   L K  +    +HG  DQ  R   L  FKEG  +
Sbjct: 909  LLGEWSSYGLILIFVNRQLEADLLYLELFKYDYKTLVLHGGQDQADREFTLQTFKEGKNK 968

Query: 298  LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +++A+ + ARG+DI D+  V N++ P+  E+YIHR+GRTGR+ + G A+T V+ E+    
Sbjct: 969  ILIATSVMARGIDIKDIIVVINYECPDHLEDYIHRVGRTGRSNKIGYAYTFVSPEEHAKA 1028

Query: 358  DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
              I  LI+  + ++N    +++ P E  ++ +      N    +K     +  K   ++K
Sbjct: 1029 YDIYSLIKNNIYYMN---KTIDMPRELEELVREFTQSSNYAEVRKKGYKGKGFKFTPNEK 1085

Query: 418  SHIPLKESEKISKL 431
            S + + ++    +L
Sbjct: 1086 SRLQMDKANAKREL 1099


>gi|115396304|ref|XP_001213791.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|121738779|sp|Q0CNX1|DBP8_ASPTN RecName: Full=ATP-dependent RNA helicase dbp8
 gi|114193360|gb|EAU35060.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 527

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 121/442 (27%), Positives = 198/442 (44%), Gaps = 30/442 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L ++P ++ ++      KPT IQ   IP +L+  D  G ++TG+GKT +F +P+L 
Sbjct: 87  SFKALNVAPWLIGSLTTMAVRKPTAIQRACIPEILKGRDCIGGSRTGSGKTIAFAVPILQ 146

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
              +          ++L PTRELA Q+ + F+      ++   L+ GG     Q   L +
Sbjct: 147 KWAE---DPFGIFAVVLTPTRELALQIYEQFKAISAPQSMKPVLITGGTDMRPQALALSQ 203

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT---- 177
              V+I TPGR+ DH              V        D    P   ++   V       
Sbjct: 204 RPHVVIATPGRLADHIQTSGEDTVRGLKRVRMVVLDEADRLLAPGPGSMLPDVETCLSAL 263

Query: 178 -----RQTLLFSATMTDELQKVSENFLQNPKRIEVNT----------------PSSTAET 216
                RQTLLF+AT+T E++ +      + K     T                P ST   
Sbjct: 264 PPSSERQTLLFTATVTPEVRALKSMPRASTKPPVFVTEIEAGGTTSAGADGAAPKSTLPP 323

Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276
                        ++  L   L    +  K  IIFCN  K    L   L +    V ++H
Sbjct: 324 TLKQTYLKVPMTHREAFLHVLLSTDGNAGKPAIIFCNHTKTADLLERLLRRLAHRVTSLH 383

Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
             + Q  R   L+ F+    +++VA+D+A+RGLDIP V  V N+DVP   ++Y+HR+GRT
Sbjct: 384 SLLPQSERSSNLARFRASAARILVATDVASRGLDIPSVALVVNYDVPRNPDDYVHRVGRT 443

Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396
            RAGR G+A TLV + D++ + AIE+ + ++++  + +  S+   + +  + +   + K 
Sbjct: 444 ARAGRRGEAVTLVGQRDVQLVLAIEERVGRQMEEWSEEGVSVEGRVVRTGVLKEVGSAKR 503

Query: 397 NPIPQKSTGFD--RRKKNYSSQ 416
             + +   G D   RK+N   +
Sbjct: 504 EALIEIEEGRDVLGRKRNKLKK 525


>gi|328870453|gb|EGG18827.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 897

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 120/451 (26%), Positives = 207/451 (45%), Gaps = 19/451 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L +S   +  + +  Y+  T IQ  +IP  L   D+ G A+TG+GKT +F++PML 
Sbjct: 131 KFNQLPISKLTMKGLDEKKYIDMTDIQRSSIPHSLCGRDILGAAKTGSGKTLAFIVPMLE 190

Query: 62  ILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
           +L +    +      +IL PTRELA Q+ D     GK ++ +  L+IGG   + + KK+ 
Sbjct: 191 LLYRNSWNIEDGVGAIILSPTRELAIQIFDVLRDAGKYHSFSAGLIIGGKNVDNEKKKIN 250

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++      +           NN+++L++DEADR+LD GF   + +I   +P +RQT
Sbjct: 251 EMNILIATPGRLLQHMDETEGFRCNNLQMLILDEADRILDFGFTKTLNSIVQNLPSSRQT 310

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT T  ++ ++   L+ P+ + V      +          ++    K   L     
Sbjct: 311 LLFSATQTKSVKDLARLSLREPEYVSVYDRDLMSTPANLTQTVMFSTLEDKI-NLLYSFL 369

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQL 298
                K  I+F    K V  +  +            +HG + Q SR+ +   F +  +  
Sbjct: 370 HSHLTKKTIVFLTTCKQVRFIYETFYLINPGCRLFQLHGKMKQTSRLDVFQQFCDEKMGT 429

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+AARGLD P V  V   D P+    YIHR+GRT R    G + T++   +   I 
Sbjct: 430 LFATDVAARGLDFPTVDWVIQMDCPDDIATYIHRVGRTARNNTEGNSLTVLLPTEKPFIK 489

Query: 359 AIEKL-IEKKVDWLNGDLS-SLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            +EK  I  ++   N + S ++ P L  I             + +K       +K + + 
Sbjct: 490 LMEKQNIHHQILETNPEKSINIQPKLAAI-------------LSEKVDLKYLAQKAFITY 536

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRG 447
              I  ++++++  L+    +  ++S+G  G
Sbjct: 537 VKSIYRQDNKEVFSLEGLDLKAFSNSMGLPG 567


>gi|313231028|emb|CBY19026.1| unnamed protein product [Oikopleura dioica]
          Length = 588

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 111/394 (28%), Positives = 187/394 (47%), Gaps = 13/394 (3%)

Query: 3   FADL--GLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           +  L   +S K + A+    GY    PIQ ++IP +L   DV   A+TG+GKT +F++P+
Sbjct: 113 WDSLAEKVSEKTLQAITKGMGYSNMMPIQARSIPHLLTGKDVLAAAKTGSGKTLAFLVPI 172

Query: 60  LT-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  I +           +IL PTRELA Q     ++  +N++ T  L++GG   +A+ KK
Sbjct: 173 VELITKLKFMNRNGTGAIILSPTRELAMQTFGVLKELMENHSQTFGLIMGGSDRKAEAKK 232

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L+ G ++L+ TPGR +    N    ++ N+    IDEADR+L++GF   +++I  L+P  
Sbjct: 233 LQNGINILVATPGRLLDHLQNTANFMVKNLMCFCIDEADRILEVGFEEEMKSIVKLIPKK 292

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T +++ ++   L+            +  T +                +  
Sbjct: 293 RQTMLFSATQTKKIEDLARISLKKVPVYIGVDDDKSTATSDMLEQGYVMSEGDARIRILY 352

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V             V +IHG   Q  R      F      
Sbjct: 353 TFLKKNKKKKIMVFFSSCMSVKFHYELFNYIDIPVLSIHGKQKQSKRTSTYFQFCNAETG 412

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR--HGKAFTLVAKEDIK 355
           +M  +D+AARGLDIP V  +  +D P+  + YIHR+GR  R      G A   +   +I 
Sbjct: 413 IMFCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRACRGDSTDKGHALLFLRPAEIG 472

Query: 356 HIDAIEK----LIEKKVDWLNGDLSSLNPPLEKI 385
            +  ++K    L E  +      ++++   LEK+
Sbjct: 473 FLLYLKKAKVPLSEFTIQE--SKVANIQNQLEKL 504


>gi|67901344|ref|XP_680928.1| hypothetical protein AN7659.2 [Aspergillus nidulans FGSC A4]
 gi|74627431|sp|Q5AVM1|DBP5_EMENI RecName: Full=ATP-dependent RNA helicase dbp5
 gi|40742655|gb|EAA61845.1| hypothetical protein AN7659.2 [Aspergillus nidulans FGSC A4]
 gi|259483997|tpe|CBF79845.1| TPA: ATP-dependent RNA helicase dbp5 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5AVM1] [Aspergillus
           nidulans FGSC A4]
          Length = 477

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 98/399 (24%), Positives = 189/399 (47%), Gaps = 19/399 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
           +F DLGL P+++  +    + KP+ IQ + +PL++     ++ G +Q+GTGKTA+FVL +
Sbjct: 70  NFEDLGLDPRILQGLSAMNFRKPSKIQERALPLLMGNPPKNLVGQSQSGTGKTAAFVLNI 129

Query: 60  LTILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           L+ L+    + +  P+ LIL PTRELA Q+    +  GK  +             A    
Sbjct: 130 LSRLDLSSEQAQKTPQALILAPTRELARQIVGVIQVMGKFLDGLHIGTAVPADTNA-RPT 188

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
               + V+      +     R  +      I++ +  + +   G       + +L+P   
Sbjct: 189 RMEASVVVGTPGTVMDMIKKRIMVAAKLKVIVLDEADNMLDQQGLGDQCIRVKALLPRDI 248

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT    + + +  F      + +     T E I+  ++   ++  K   L+Q  
Sbjct: 249 QVVLFSATFPAHVHQYASKFAPAANELTLQHEELTVEGIKQLYLDCASEEDKYRTLVQL- 307

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                T+ + IIF   + + V +   +  +G +V ++ G I+   R +I+  F+ G  ++
Sbjct: 308 -YGLLTVGSSIIFVKTRASAVEIERRMVAEGHTVASLTGGIEGSQRDQIIDQFRAGHAKV 366

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPN-----------RAENYIHRIGRTGRAGRHGKAFT 347
           ++ +++ ARG+D+  V  V N+D+P              + Y+HRIGRTGR GR G + +
Sbjct: 367 LITTNVLARGIDVSTVSMVINYDIPELHQPPNRPRQADFQTYLHRIGRTGRFGRVGVSIS 426

Query: 348 LVA-KEDIKHIDAIEKLIEKKVDWLN-GDLSSLNPPLEK 384
            V+ +E+ + ++ I+K     +  ++  D   +   ++K
Sbjct: 427 FVSNREEWEMLNQIQKYFNTDIQRIDTKDWDEVEDIIKK 465


>gi|29833596|ref|NP_828230.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680]
 gi|29610720|dbj|BAC74765.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 498

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 118/359 (32%), Positives = 179/359 (49%), Gaps = 5/359 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L L  +++  +   G  +P PIQ  T+P  L   DV G  +TG+GKT +F L +L 
Sbjct: 58  TFGELDLPAELLKTLTSLGVNEPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLV 117

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                RA  R P  LIL PTRELA QV D    Y +   L +A ++GG+    Q   L  
Sbjct: 118 RTAGQRAEARKPLALILVPTRELAQQVTDALTPYAQLLKLRLATVVGGMSIGRQASALRA 177

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+V++ TPGR+ D   R    ++ + I V+DEAD+M DMGF+P +  +   V    Q +
Sbjct: 178 GAEVVVATPGRLADLIERKDCRLDRVSITVLDEADQMADMGFMPQVTELLDQVRPDGQRM 237

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +  +   +L +P    V+  + T  T+EH  +  +              + 
Sbjct: 238 LFSATLDRNIDLLVRRYLHDPVVHSVDPSAGTVTTMEHHVLHVHGTDK-----FATATEI 292

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  ++F + K  V      L   G    A+HG   Q  R + L+ F+ G I  +VA
Sbjct: 293 AARDGRVLMFLDTKHAVDQFTKHLLGSGVKAAALHGGKSQPQRTRTLAQFRTGDITALVA 352

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +++AARG+ + D+  V N D P+  ++Y+HR GRT RAG  G   TLV     + +  +
Sbjct: 353 TNVAARGIHVDDLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTLVLPNQRREMARL 411


>gi|326470625|gb|EGD94634.1| ATP-dependent RNA helicase DBP5 [Trichophyton tonsurans CBS 112818]
          Length = 481

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 98/399 (24%), Positives = 194/399 (48%), Gaps = 19/399 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +LGL   V+  +    + +P+ IQ + +PL++     ++ G +Q+GTGKTA+FVL +
Sbjct: 81  SFEELGLDEAVLRGLRQMRFSRPSKIQERALPLLMSNPPQNMIGQSQSGTGKTAAFVLNV 140

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ LE     + +P+ LIL P+RELA Q+    +  G    +    +   +P E    + 
Sbjct: 141 LSRLEVTPEMINVPQALILAPSRELARQIVGVVQVMG--SFIEGLKIATLVPMETNRNQP 198

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              + V+            R     +   +++ +  + +   G       + S +P T Q
Sbjct: 199 IEASLVVGTPGTVQDFIRKRLFNTQHVKVLVLDEADNMLDQQGLGDQCIRMKSSLPKTTQ 258

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT  D + + +  F  N  ++ +     T E I+  ++   +   K   L++   
Sbjct: 259 IVLFSATFPDSVVRYAHKFAPNANQLTLKHEELTVEGIKQLYLDCDSTEHKYEILVK--F 316

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+ + IIF   + + V +   + ++G +V ++ G ++ + R +++ +F++GT +++
Sbjct: 317 YGLLTIGSSIIFVKTRASAVEIERRMVEEGHTVVSLTGGVEGQKRDEVIDSFRKGTAKVL 376

Query: 300 VASDLAARGLDIPDVGHVFNFDVPN-----------RAENYIHRIGRTGRAGRHGKAFTL 348
           + +++ ARG+D+  V  V N+D+P              + Y+HRIGRTGR GR G A + 
Sbjct: 377 ITTNVLARGIDVQTVSMVINYDIPELHAPGAGERIADPQTYLHRIGRTGRFGRVGVAVSF 436

Query: 349 VA-KEDIKHIDAIEKLIEKKVDWLNG-DLSSLNPPLEKI 385
           V+ KE+   +  I+K     +  ++  D   +   ++K+
Sbjct: 437 VSNKEEWTMLMDIQKYFGTDIMRVDSRDWDEVEDVVKKV 475


>gi|255721553|ref|XP_002545711.1| hypothetical protein CTRG_00492 [Candida tropicalis MYA-3404]
 gi|240136200|gb|EER35753.1| hypothetical protein CTRG_00492 [Candida tropicalis MYA-3404]
          Length = 770

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 116/449 (25%), Positives = 214/449 (47%), Gaps = 13/449 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DL ++   +  + ++ +V  T IQ KTIP+ L+  D+ G A+TG+GKT +F++P + 
Sbjct: 49  QFSDLPITENTLKGLKESTFVSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLVPTIE 108

Query: 62  ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L + +         LI+ PTRELA Q+ +   K G+N + +  L+ GG   + + +++ 
Sbjct: 109 SLIRNKITEYDGLAALIISPTRELAVQIFEVLTKIGRNNSFSAGLVTGGKDVQYEKERVS 168

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++               +  +N+++LV+DEADR LDMGF   I NI   +P TRQT
Sbjct: 169 RMNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFRKQIDNILGHLPTTRQT 228

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT ++ ++ ++   L NPK+I V++    + T E            +   +     
Sbjct: 229 LLFSATQSESVKDLARLSLTNPKKIGVSSDQEISATPESLDQYYVKVPLDEKLDVLWSFI 288

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI--HGNIDQRSRMKILSNFKEGTIQL 298
                   ++F +  K V     +       +  +  +G   Q +R++    F +     
Sbjct: 289 KSHLKSKILVFFSSSKQVQFAYETFRTLQPGISLMKLYGRHKQTARLETTKKFSQAQHAC 348

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+ ARGLD P +  V   D P  +  Y+HR+GR+ R GR GK+  ++   + + + 
Sbjct: 349 LFATDIVARGLDFPAIDWVVQVDCPEDSATYVHRVGRSARFGRQGKSLLMLLPSEEEGM- 407

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418
            +++L   K++    ++        K  I     +        K+ G    ++ + +   
Sbjct: 408 -LKRLKIHKIEPKFMNI----KQKSKKSIRPQLQSLCFKDPVMKNLG----QRAFIAYFK 458

Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRG 447
            I +++ + + K+++   E  A SLG  G
Sbjct: 459 SIYIQKDKDVFKVEELPAEAYAASLGLPG 487


>gi|145240463|ref|XP_001392878.1| ATP-dependent RNA helicase DBP10 [Aspergillus niger CBS 513.88]
 gi|134034062|sp|A2QRY2|DBP10_ASPNC RecName: Full=ATP-dependent RNA helicase dbp10
 gi|134077396|emb|CAK40010.1| unnamed protein product [Aspergillus niger]
          Length = 932

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 126/407 (30%), Positives = 204/407 (50%), Gaps = 42/407 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIP++++  DV G+A+TG+GKTA+FV+PM+  
Sbjct: 92  FQAMGLNANLLKAITRKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIQK 151

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +V   R LIL P+RELA Q     ++ GK  +L   LL+GG   E Q   +   
Sbjct: 152 LKSHSTQVGA-RGLILSPSRELALQTLKVVKELGKGTDLKAVLLVGGDSLEEQFSMMAGN 210

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P TRQTLL
Sbjct: 211 PDIVIATPGRFLHLKVEMNLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPSTRQTLL 270

Query: 183 FSATMTDELQ-----------------------------------------KVSENFLQN 201
           FSAT+   L                                              + +  
Sbjct: 271 FSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQNAFFSVKSGDKEGALMYILHNVIK 330

Query: 202 PKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNL 261
                        E       + +++  K+        +   T  + IIF   K +V  L
Sbjct: 331 MPTGPTEAAQRMKEENASGKSSKFSKKRKRSDDKAINFKESPTKHSTIIFAATKHHVDYL 390

Query: 262 CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321
              L + GF+    +G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D
Sbjct: 391 YSLLNEAGFATSYAYGSLDQTARKIQVHNFRTGISNILVVTDVAARGIDIPILANVINYD 450

Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            P++A+ ++HR+GRT RAGR G +++LV   D  ++  ++  + +++
Sbjct: 451 FPSQAKIFVHRVGRTARAGRTGWSYSLVRDSDAPYLLDLQLFLGRRL 497


>gi|302659417|ref|XP_003021399.1| hypothetical protein TRV_04473 [Trichophyton verrucosum HKI 0517]
 gi|291185296|gb|EFE40781.1| hypothetical protein TRV_04473 [Trichophyton verrucosum HKI 0517]
          Length = 481

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 97/399 (24%), Positives = 193/399 (48%), Gaps = 19/399 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +LGL   V+  +    + +P+ IQ + +PL++     ++ G +Q+GTGKTA+FVL +
Sbjct: 81  SFEELGLDEAVLRGLRQMRFSRPSKIQERALPLLMSNPPQNMIGQSQSGTGKTAAFVLNV 140

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ LE     + +P+ LIL P+RELA Q+    +  G    +    +   +P E    + 
Sbjct: 141 LSRLEVTPEMINVPQALILAPSRELARQIVGVVQVMG--SFIEGLKIATLVPMETNRNQP 198

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              + V+            R     +   +++ +  + +   G       + S +P   Q
Sbjct: 199 VEASLVVGTPGTVQDFIRKRLFNTQHVKALVLDEADNMLDQQGLGDQCIRMKSSLPKNTQ 258

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT  D + + +  F  N  ++ +     T E I+  ++   +   K   L++   
Sbjct: 259 IVLFSATFPDSVVRYAHKFAPNANQLTLKHEELTVEGIKQLYLDCDSTEHKYEILVK--F 316

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+ + IIF   + + V +   + ++G +V ++ G ++ + R +++ +F++GT +++
Sbjct: 317 YGLLTIGSSIIFVKTRASAVEIERRMVEEGHTVVSLTGGVEGQKRDEVIDSFRKGTAKVL 376

Query: 300 VASDLAARGLDIPDVGHVFNFDVPN-----------RAENYIHRIGRTGRAGRHGKAFTL 348
           + +++ ARG+D+  V  V N+D+P              + Y+HRIGRTGR GR G A + 
Sbjct: 377 ITTNVLARGIDVQTVSMVINYDIPELHAPGAGERIADPQTYLHRIGRTGRFGRVGVAVSF 436

Query: 349 VA-KEDIKHIDAIEKLIEKKVDWLNG-DLSSLNPPLEKI 385
           V+ KE+   +  I+K     +  ++  D   +   ++K+
Sbjct: 437 VSNKEEWTMLMDIQKYFGTDIMRVDSRDWDEVEDVVKKV 475


>gi|124001007|ref|XP_001276924.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121918910|gb|EAY23676.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 491

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 109/363 (30%), Positives = 184/363 (50%), Gaps = 2/363 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
           +F+ L L  K +  +    +     IQ + IP++L   D+   A+TG+GKT +F++P + 
Sbjct: 28  EFSTLPLHEKTLEVLKRLPFNTMYAIQEQAIPILLSGGDILAAAKTGSGKTLAFLIPAID 87

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +  K   +      LI+ PTRELA Q+ D      K+  ++     GG   + +   L+
Sbjct: 88  LLFRKNATKKDGTIVLIVAPTRELADQIFDVATLLLKDTEVSFGAAYGGKEKKNETTLLK 147

Query: 121 RGADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
            G ++L+ TPGR+ DH    K     N+++L+IDEADR+L+ G+   +  I   +P  RQ
Sbjct: 148 SGINLLVATPGRLCDHILTTKDWSLENLKMLIIDEADRILEDGYKDQLHAIVEGIPSERQ 207

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T LFSAT T ++ K++E   ++         ++   T  +           K  +L   +
Sbjct: 208 TALFSATQTKDVSKIAEVSFKHTPVYVGVDDNADEVTAANLTQDCMIITPSKRLMLLITI 267

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             ++  K  I+F N +  V      L+K   +  A+HG+  Q+ R+  L  F+     +M
Sbjct: 268 LKRNDKKKVIVFFNTRAGVKFHHQYLKKMNINTIALHGDQTQQKRLTSLEEFRNKKSGIM 327

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           + +D+AARGLDI  V  V  +D P   + YIHR+GR  RAG+ GKA  ++   + K +D 
Sbjct: 328 LCTDVAARGLDIEGVHWVIQYDPPQSIKEYIHRVGRCARAGKSGKALIILLPNEKKFVDR 387

Query: 360 IEK 362
           +++
Sbjct: 388 LQE 390


>gi|321311997|ref|YP_004204284.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
 gi|320018271|gb|ADV93257.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis BSn5]
          Length = 438

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 133/440 (30%), Positives = 212/440 (48%), Gaps = 14/440 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F    L P ++ AV   G+ +PT IQ + IP VL++  V G +QTGTGKT +++LP+L 
Sbjct: 5   KFELYELKPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLN 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++  +  V++  T           Q A    +  +   +     IGG   +    KL+ 
Sbjct: 65  KIDPAKDVVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLKI 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGRI D      L ++  E LVIDEAD MLDMGF+  +  I S +P   Q L
Sbjct: 125 QPHLVVGTPGRIADLIKEQALSVHKAESLVIDEADLMLDMGFLADVDYIGSRMPEDLQML 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           +FSAT+ ++L+   + +++NPK   V     TA  IEH  + +  +   K         S
Sbjct: 185 VFSATIPEKLKPFLKKYMENPKYAHVEPKQVTAAKIEHILIPSKHRDKDKLLFDI---MS 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                 GI+F N K    ++   L  +G  +  +HG +  R R K++    +     ++A
Sbjct: 242 HLNPYLGIVFANTKNTADHIAQYLTGKGMKIGLLHGGLTPRERKKVMKQINDLEFTYIIA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DLAARG+DI  V HV N+++P+  + Y+HR+GRT RAG  G+A T+    D   +  +E
Sbjct: 302 TDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQAMTIYELTDEDALVRLE 361

Query: 362 KL-IE------KKVDWLNG-DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           K+ IE      +K +W  G D        +  + A     R      +   G+   K+  
Sbjct: 362 KMGIEFDYLELEKGEWKKGDDRQRRKKRKKTPNEADEIAHRLVKKPKKVKPGY---KRKM 418

Query: 414 SSQKSHIPLKESEKISKLQQ 433
           S +   I  K+    SK ++
Sbjct: 419 SYEMEKIKKKQRRNQSKKRK 438


>gi|170083961|ref|XP_001873204.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650756|gb|EDR14996.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 355

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 128/348 (36%), Positives = 192/348 (55%), Gaps = 3/348 (0%)

Query: 6   LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI--L 63
           + LS  ++ ++   G+ KPTPIQ   IP+ L   DV G A TG+GKTA+F++PM+     
Sbjct: 1   MNLSRPLLKSIASLGFNKPTPIQAAAIPVALLGKDVVGNAMTGSGKTAAFIIPMVERLLY 60

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
            +   +    R L+L PTRELA Q  D   K   + ++ + LL+GG+  ++Q   L    
Sbjct: 61  REKGKKAAATRCLVLVPTRELAVQCFDVGVKLSTHTDIQLCLLVGGLSLKSQEVALRARP 120

Query: 124 DVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           D++I TPGR++DH         + I+ILV+DEADRML  GF   +  I    P +RQT+L
Sbjct: 121 DIVIATPGRLIDHIRNSPAFTLDAIDILVLDEADRMLSDGFADELAEIIKSCPVSRQTML 180

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSATMTD + ++ +  L  P R+ V+   +TA  +   FV   A    + + L   L  +
Sbjct: 181 FSATMTDSVDELVKMSLNKPVRLFVDPRKATARGLVQEFVRVRAGKDSERSALLVALCKR 240

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 IIF   KK    +       G     +HG++ Q  R+K L  F++G +  ++A+
Sbjct: 241 TFKNRVIIFLRSKKLAHQMRIVFSLLGLKCEELHGDLSQEQRLKALQLFRDGQVDFLMAT 300

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           DLA+RGLDI  V  + N+D+P +   Y+HR+GRT RAG+ G+   LVA
Sbjct: 301 DLASRGLDIKGVETIINYDMPGQLSQYLHRVGRTARAGKQGRVHILVA 348


>gi|70992295|ref|XP_750996.1| ATP dependent RNA helicase (Dbp10) [Aspergillus fumigatus Af293]
 gi|74697392|sp|Q8NJM2|DBP10_ASPFU RecName: Full=ATP-dependent RNA helicase dbp10
 gi|21627815|emb|CAD37147.1| putative ATP-dependent RNA helicase [Aspergillus fumigatus]
 gi|66848629|gb|EAL88958.1| ATP dependent RNA helicase (Dbp10), putative [Aspergillus fumigatus
           Af293]
 gi|159124566|gb|EDP49684.1| ATP dependent RNA helicase (Dbp10), putative [Aspergillus fumigatus
           A1163]
          Length = 869

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 122/407 (29%), Positives = 200/407 (49%), Gaps = 42/407 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GLS  ++ A+   G+  PTPIQ KTIP+++   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 72  FQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIPMIEK 131

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +V   R L+L P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 132 LKSHSTKVGA-RGLVLSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFAMIAGN 190

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P  RQTLL
Sbjct: 191 PDIIIATPGRFLHLKVEMNLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPANRQTLL 250

Query: 183 FSATMTDELQK-----------------------------------------VSENFLQN 201
           FSAT+   L +                                            + +  
Sbjct: 251 FSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQNAFFSVKSSEKEGALLYILHEVIK 310

Query: 202 PKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNL 261
                        E           +  +         +   T  + I+F   K +V  L
Sbjct: 311 MPTGPTEVSQQRKEEDASAKNLKNKKRKRAEMEKAVNTRESPTKHSTIVFAATKHHVDYL 370

Query: 262 CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321
              L + GF+V  ++G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D
Sbjct: 371 YSLLCEAGFAVSYVYGSLDQTARKIQVQNFRTGMTNILVVTDVAARGIDIPILANVINYD 430

Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            P++ + ++HR+GRT RAGR G +++LV   D  ++  ++  + +++
Sbjct: 431 FPSQPKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRRL 477


>gi|238505736|ref|XP_002384077.1| DEAD/DEAH box RNA helicase, putative [Aspergillus flavus NRRL3357]
 gi|220690191|gb|EED46541.1| DEAD/DEAH box RNA helicase, putative [Aspergillus flavus NRRL3357]
          Length = 604

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 109/416 (26%), Positives = 164/416 (39%), Gaps = 37/416 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL P V   V    Y  PTPIQ   IP V+  HD+  IAQTG+GKTA+F++P+L+
Sbjct: 137 SFDDAGLHPIVRENVKLCHYDIPTPIQAYAIPAVMTGHDLIAIAQTGSGKTAAFLIPVLS 196

Query: 62  ILEKGRARVRMPRTL-------------------ILEPTRELAAQVADNFEKYGKNYNLT 102
            L     ++  PR                     I+ PTREL+ Q+ D   +      L 
Sbjct: 197 KLMGKAKKLAAPRPNLADGFNPIVDAVRAEPLVLIVAPTRELSTQIFDEARRLCYRSMLR 256

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
             ++ GG P   Q  +L++G D+LI TPGR+LD  ++  +L        I +    L + 
Sbjct: 257 PCVVYGGAPVRDQRDELQKGCDILIGTPGRLLDFMDKPHILSLRRVKYTIIDEADELLLA 316

Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN-------------T 209
                 N         ++  + + M ++       F     +                  
Sbjct: 317 DWESDFNKIMSGGGKSESTDWPSYMNEDADHRYMMFSATFNKECRQLARKFLAGDHVRIR 376

Query: 210 PSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269
                 T  +                   L         +IF N K     L   L   G
Sbjct: 377 IGRPGSTHINVDQTIVYSEEHLKKQCLYDLLLAMPPSRTLIFVNSKAQADLLDDYLYNMG 436

Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNR---- 325
               +IH +  QR R   L  F+     ++VA+ ++ARGLDI +V HV N+D+P +    
Sbjct: 437 LPSTSIHSDRTQREREDALRAFRTAKCPILVATGVSARGLDIKNVMHVVNYDLPRQSHGG 496

Query: 326 AENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIEKLIEKKVDWLNGDLSSLNP 380
              Y+HRIGRT R G  G A +    + D      + +L+ +    +   L S  P
Sbjct: 497 IVEYVHRIGRTARIGNEGLATSFYNHDRDSDLAPDLVRLLLETNQKIPDFLESYKP 552


>gi|195572770|ref|XP_002104368.1| pit [Drosophila simulans]
 gi|194200295|gb|EDX13871.1| pit [Drosophila simulans]
          Length = 918

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 108/361 (29%), Positives = 188/361 (52%), Gaps = 5/361 (1%)

Query: 2   DFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L   +S   + A+ + G+ + T IQ K++  +L+  D+ G AQTG+GKT +F++P 
Sbjct: 186 SFASLKGAVSEATLRAIKEMGFTEMTEIQAKSLTPLLKGRDLVGAAQTGSGKTLAFLIPA 245

Query: 60  LTILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + ++ K R   R     +I+ PTREL+ Q     ++   +++ T  L++GG   + +++K
Sbjct: 246 VELINKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEK 305

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G ++L+ TPGR +    N    L  N++ L+IDE DR+L++GF   ++ I +L+P  
Sbjct: 306 LGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKR 365

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQT+LFSAT T  ++ +S+  L++         +    T++          S+K  L+  
Sbjct: 366 RQTMLFSATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLF 425

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V             V +IHG   Q  R      F      
Sbjct: 426 TFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESG 485

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
           +++ +D+AARGLDIP V  +  +D P+    YIHR+GRT +  G  G A  L+  E++  
Sbjct: 486 ILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTAKGSGTSGHALLLMRPEELGF 545

Query: 357 I 357
           +
Sbjct: 546 L 546


>gi|24372719|ref|NP_716761.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24346781|gb|AAN54206.1|AE015557_12 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 447

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 136/437 (31%), Positives = 222/437 (50%), Gaps = 20/437 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+LGL+  +  A+       PT +Q   IP +L   D+  ++QTG+GKT +F LP+L
Sbjct: 17  LTFAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLL 75

Query: 61  TILEKGR--------ARVRMPRTLILEPTR----ELAAQVADNFEKYGKNYNLTVALLIG 108
            IL +               P  L+L PTR    +++  +     +   +  L + LL G
Sbjct: 76  QILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCG 135

Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168
           G+  E Q   L     +++ TPGR+LD   +  + ++ I+ LV+DEADR+L+MGF P +Q
Sbjct: 136 GVALEQQLADLSAKPQLVVATPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQ 195

Query: 169 NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
            + +++P  +QTLLFSAT+ + L  ++   L N       +  +         +    + 
Sbjct: 196 KLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQLYLVNKG 255

Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
           SK  AL+  L Q Q      ++F + + +   +   L K G +  A+HG  DQ  R + L
Sbjct: 256 SKAQALIALLKQYQWP--QVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTL 313

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           ++FK   IQ++VA+DL ARG+ +  +  V N D+P  A  Y+HRIGRT RAG  G A +L
Sbjct: 314 ADFKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISL 373

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLN-GDLSSLNPPLEK-IDIAQHNHARKNNPIPQKSTGF 406
           V   ++ ++ AI  L  + +  +   D    + P EK ID A++    K  P  +++   
Sbjct: 374 VCHGEMPNLTAIRNLTARALPLVFLADFPVTDKPSEKIIDGAENKVIPKRPPRDKQA--- 430

Query: 407 DRRKKNYSSQKSHIPLK 423
           +RR  N  S K+    +
Sbjct: 431 NRRSINKHSVKAFKGKR 447


>gi|89100060|ref|ZP_01172930.1| hypothetical protein B14911_17825 [Bacillus sp. NRRL B-14911]
 gi|89085294|gb|EAR64425.1| hypothetical protein B14911_17825 [Bacillus sp. NRRL B-14911]
          Length = 381

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 106/353 (30%), Positives = 181/353 (51%), Gaps = 7/353 (1%)

Query: 7   GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66
           GL P +      +G+ +PT +Q K+IP + +  DV   + TGTGKT +++LP+L  ++ G
Sbjct: 10  GLKPFIQEVWEKSGFNEPTAVQSKSIPFIQEGRDVIAESPTGTGKTLAYLLPLLDKIDPG 69

Query: 67  RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
           +  V+     I+ P++EL  Q+    +K+ +   +  A  IGG   + Q +KL++   + 
Sbjct: 70  KKAVQAV---IVAPSQELVMQIFSEVQKWAEGSGIKGATFIGGANTKRQLEKLKKHPQIA 126

Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
           + TPGR+L+   + KL M+ ++ +V+DE D++L    +  ++ I       RQ   FSAT
Sbjct: 127 LGTPGRMLELIKQKKLKMHEVKTVVLDEGDQLLVPEHLETVKTILKSTLADRQLAFFSAT 186

Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246
           + +   KV++    + + I V       E I       Y    ++  +      S+    
Sbjct: 187 LPESTAKVAQELSADAELIRVGK----EEAIPSDVDHIYFACEQRDKIKLLEKISRVKDI 242

Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306
            G+ F     N+  L   L+ +G     +H ++D+  R K L NF+EG   L+ A+D+AA
Sbjct: 243 KGLAFVKDIGNLAVLSEKLDFKGVKAGILHSDLDKMDRQKHLKNFREGKSSLLFATDVAA 302

Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           RGLDI  V HV ++D P   + Y+HR GRTGR G  G   +LV + + + +  
Sbjct: 303 RGLDIQGVTHVVHYDFPKDIKQYVHRSGRTGRFGASGTVISLVTEREERELKK 355


>gi|330826208|ref|YP_004389511.1| DEAD/DEAH box helicase domain-containing protein [Alicycliphilus
           denitrificans K601]
 gi|329311580|gb|AEB85995.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           K601]
          Length = 590

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 193/413 (46%), Gaps = 48/413 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-----QRH--DVCGIAQTGTGKTASF 55
           F  LGL+P++V AV D GY +PT +Q K IPL +          D+   +QTG+GKTA+F
Sbjct: 33  FVRLGLAPELVQAVADLGYTQPTAVQEKAIPLAMGAADVAGRFIDLMVSSQTGSGKTAAF 92

Query: 56  VLPMLT---------------------------------------ILEKGRARVRMPRTL 76
           +LP+L                                               +   P  L
Sbjct: 93  LLPVLHTLIQQQADADAAARAEFERAAADAAARGEAPPKRSKRKNPTHPRNFKAATPGAL 152

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           +L PTRELA QVA +  +  K+        + G           + A++++ TPGR+LD 
Sbjct: 153 VLCPTRELAQQVAHDAIELVKHCKGLRIANVVGGMPYQLQIARLQNANLVVATPGRLLDL 212

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
               ++ ++ ++ LV+DEADRMLD+GF   +  I  L    +QT++FSAT    +Q+++ 
Sbjct: 213 QRSMQIKLDQVQFLVVDEADRMLDLGFSDDLAEINQLTSERKQTMMFSATFAPRIQQLAM 272

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--QLLQSQDTMKNGIIFCNQ 254
             +             T +                    +         ++   I+F + 
Sbjct: 273 RVMHEGGASVKKVQIDTPQEKHANIKQMLYWADNAQHKRKLLDHWLRDASIGQAIVFAST 332

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           +     L + L++ GFS  A+HG + Q  R + L   + G +Q++VA+D+AARG+D+P +
Sbjct: 333 QVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPSI 392

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
            HVFNF +P +AE+Y HRIGRTGRAGR G A T     D + I  IE    ++
Sbjct: 393 THVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIEGYSRQQ 445


>gi|315444871|ref|YP_004077750.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
 gi|315263174|gb|ADT99915.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
          Length = 468

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 120/361 (33%), Positives = 182/361 (50%), Gaps = 4/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+   +V A+ + G  +P PIQ  T+P  L   DV G  +TG+GKT +F +P++ 
Sbjct: 5   TFADLGVPAPLVKALAERGIAEPFPIQAATLPDSLAGRDVLGRGKTGSGKTLAFSIPLVA 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   R +   P  L+L PTRELA Q+    E       L V  + GG+    Q   L  
Sbjct: 65  ALTGIRRQASRPSGLVLAPTRELATQITAALEPMATAAGLRVTTIYGGVSQGRQVSALRG 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++  PGR+ D   +  + ++N+ + V+DEAD M D+GF+P +  I +  P   Q L
Sbjct: 125 GIDIVVACPGRLEDLMQQKVISLDNVTVTVLDEADHMADLGFLPGVTRILAATPRGGQRL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ + + K+ + FL NP    VN  +     + H          KK  + Q    +
Sbjct: 185 LFSATLDNGVDKLVQRFLDNPVLHSVNEAAEAPAQMTHHVFHVGGVQEKKDLVHQLASGT 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K     L   L + G     +HGN+ Q +R + L+ F  G  +++VA
Sbjct: 245 ----GRRILFMRTKHQARKLAKQLTESGVPSVDLHGNLSQPARERNLAAFSSGEARVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   T+V  E  +    + 
Sbjct: 301 TDIAARGVHVDDVELVVHVDPPMEHKAYLHRSGRTARAGSDGDVVTVVLPEQRRDTQQLL 360

Query: 362 K 362
           +
Sbjct: 361 R 361


>gi|311895413|dbj|BAJ27821.1| putative ATP-dependent RNA helicase [Kitasatospora setae KM-6054]
          Length = 594

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 119/359 (33%), Positives = 185/359 (51%), Gaps = 5/359 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L L   ++  +   G  +P PIQ  T+P  L   DV G  +TG+GKT +F LP+L 
Sbjct: 87  SFAELELPAGLMRELGAQGVTEPFPIQAATLPDALAGRDVLGRGRTGSGKTLAFGLPLLV 146

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                RA  R P  L+L PTRELA QV +    Y    NL +  ++GG+    Q+ ++ R
Sbjct: 147 RTAGKRATARRPLALVLVPTRELAQQVTEALAPYAGVLNLRITTVVGGMSITRQSNQVRR 206

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G +VL+ TPGR+ D   RG + + ++ I V+DEAD+M DMGF+P +  +   V    Q +
Sbjct: 207 GTEVLVATPGRLDDLIQRGDVFLEDVAITVLDEADQMADMGFLPQVVKLLEQVADGGQRM 266

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   + ++   FL +P    V+  +    T++H  +       +     +   + 
Sbjct: 267 LFSATLDRNVDRLVNRFLTDPVTHSVDPSAGAVTTMDHHLLQL-----EPADKAETTARI 321

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F + K     L   L   G    A+HG   Q  R ++L  F+EG +  ++A
Sbjct: 322 AARDGRVIMFVHTKHGADRLAKQLRAHGVVAAALHGGKSQPQRNRVLDQFREGEVTALIA 381

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +++AARG+ I  +  V N D P   ++Y+HR GRT RAG  G   TLV  E  + ++ +
Sbjct: 382 TNVAARGIHIDGLDLVVNVDPPIDHKDYLHRGGRTARAGESGTVVTLVLPEQRREVNRL 440


>gi|194868374|ref|XP_001972279.1| GG13972 [Drosophila erecta]
 gi|190654062|gb|EDV51305.1| GG13972 [Drosophila erecta]
          Length = 1079

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 100/466 (21%), Positives = 189/466 (40%), Gaps = 17/466 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L LS  ++  +    +V PT IQ   IP+ L   D+   +++GTGKT  +V+  + 
Sbjct: 26  TFEELRLSRNLLHGLKRHNFVTPTKIQAAAIPMALANMDLIIQSKSGTGKTLIYVIAAMQ 85

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120
                  R   P TLI+ PTRELA QV D F    +   +   A  IGG       ++++
Sbjct: 86  GYHPRMTR---PHTLIVVPTRELAIQVEDTFFYLCESFRDFKCAAFIGGTDVSKDRRRMQ 142

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               ++      +  + NR   +     +++ +             +  +   +P  RQ 
Sbjct: 143 ASRVIIGTPGRLLHLYQNRVLDVSKLGLLVLDEADQLYQTKSLQDTVSKLIEALPKNRQI 202

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ--- 237
           +  SAT   +L +     +  P  I  +  ++    I         Q +    +  +   
Sbjct: 203 IACSATYDQDLDERLAKIMHKPMLISNSERATVLLGIRQFVYELPQQTNSVEEMRLKLQV 262

Query: 238 --LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295
              + +Q   +  +IF + +    +  + L   G     I G +DQ  R+ +   ++  T
Sbjct: 263 LGQIFNQLPYEQAVIFASSQMRADSYKNYLTASGVECHLISGAMDQSERLNVFEGYRNFT 322

Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDI 354
           ++++VA+DL ARG+D P    V N D P     Y+HRIGR GR G  G A T + +K++ 
Sbjct: 323 MRILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRFGSKGIAITFIASKKES 382

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN---HARKNNPIPQKSTGFDRRKK 411
           +    + + +      L      +       D  ++N   + ++ NP+ +         K
Sbjct: 383 QKFREMSQKVATAWSVLEFPKEPMPKEFNFWDFEKYNFGYYIKEENPLQEMPVKHKVPNK 442

Query: 412 NYSSQKSHIPLKESEKISKLQQDIQ----ENDADSLGFRGNMPAFM 453
             S++++     E+  +S  +  ++      D D       +P  +
Sbjct: 443 ENSNKENVGRDHENPDVSSRKPSVELENIRKDHDYFKKMEKLPVAL 488


>gi|223590191|sp|A5DLF4|DBP4_PICGU RecName: Full=ATP-dependent RNA helicase DBP4
 gi|190347685|gb|EDK40007.2| hypothetical protein PGUG_04105 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 754

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 120/450 (26%), Positives = 206/450 (45%), Gaps = 15/450 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F  L +S      +L+  +V  T IQ K IP+ L+  DV G A+TG+GKT +F++P + 
Sbjct: 47  QFKHLPISEGTYKGLLENNFVSLTDIQKKAIPVALKSEDVMGTARTGSGKTLAFLVPVIE 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ++ +          LI+ PTRELA Q  +   K GK  + +  L+ GG   + + +++ 
Sbjct: 107 KLIRENITEYDGLAALIVSPTRELAVQTFEVLTKIGKYNSFSAGLVTGGKDVKYEKERIS 166

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++               +  +N+++LV+DEADR LDMGF   I NI   +P TRQT
Sbjct: 167 RMNILIGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFRKQIDNILGHLPVTRQT 226

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT +D ++ ++   L NPKR+ V++    +   E                +     
Sbjct: 227 LLFSATQSDNVKDLARLSLVNPKRVGVSSDQEVSSIPESLEQYYIKISLASKMDVLWSFL 286

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC--AIHGNIDQRSRMKILSNFKEGTIQL 298
                   ++F +  K V     +  +    +    ++G   Q SR++    F       
Sbjct: 287 KSHLKSKILVFFSSSKQVQFAYEAFRRLQPGISLLKLYGRHKQTSRLETTMKFSRAQHAC 346

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+ ARGLD P +  V   D P  A  Y+HR+GR  R GR GK+  ++A  +     
Sbjct: 347 LFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGRAARFGRQGKSLLMLAPSE----- 401

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLE-KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             E+ + K+++     L  +N   + K  I+    +        K+ G    ++ + S  
Sbjct: 402 --EEGMVKRLEAHKISLKMMNIKQKNKKVISPQLQSLCFQDPELKNLG----QRAFISYM 455

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRG 447
             + +++ + I K+++      A +LG  G
Sbjct: 456 KSVHIQKDKDIFKVEELPAAEYAKALGLPG 485


>gi|146414812|ref|XP_001483376.1| hypothetical protein PGUG_04105 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 754

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 120/450 (26%), Positives = 206/450 (45%), Gaps = 15/450 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-ML 60
            F  L +S      +L+  +V  T IQ K IP+ L+  DV G A+TG+GKT +F++P + 
Sbjct: 47  QFKHLPISEGTYKGLLENNFVSLTDIQKKAIPVALKSEDVMGTARTGSGKTLAFLVPVIE 106

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            ++ +          LI+ PTRELA Q  +   K GK  + +  L+ GG   + + +++ 
Sbjct: 107 KLIRENITEYDGLAALIVSPTRELAVQTFEVLTKIGKYNSFSAGLVTGGKDVKYEKERIS 166

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           R   ++               +  +N+++LV+DEADR LDMGF   I NI   +P TRQT
Sbjct: 167 RMNILIGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFRKQIDNILGHLPVTRQT 226

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT +D ++ ++   L NPKR+ V++    +   E                +     
Sbjct: 227 LLFSATQSDNVKDLARLSLVNPKRVGVSSDQEVSSIPESLEQYYIKISLASKMDVLWSFL 286

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC--AIHGNIDQRSRMKILSNFKEGTIQL 298
                   ++F +  K V     +  +    +    ++G   Q SR++    F       
Sbjct: 287 KSHLKSKILVFFSSSKQVQFAYEAFRRLQPGISLLKLYGRHKQTSRLETTMKFSRAQHAC 346

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           + A+D+ ARGLD P +  V   D P  A  Y+HR+GR  R GR GK+  ++A  +     
Sbjct: 347 LFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGRAARFGRQGKSLLMLAPSE----- 401

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLE-KIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             E+ + K+++     L  +N   + K  I+    +        K+ G    ++ + S  
Sbjct: 402 --EEGMVKRLEAHKISLKMMNIKQKNKKVISPQLQSLCFQDPELKNLG----QRAFISYM 455

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRG 447
             + +++ + I K+++      A +LG  G
Sbjct: 456 KSVHIQKDKDIFKVEELPAAEYAKALGLPG 485


>gi|145224540|ref|YP_001135218.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           gilvum PYR-GCK]
 gi|145217026|gb|ABP46430.1| DEAD/DEAH box helicase domain protein [Mycobacterium gilvum
           PYR-GCK]
          Length = 468

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 120/361 (33%), Positives = 182/361 (50%), Gaps = 4/361 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+   +V A+ + G  +P PIQ  T+P  L   DV G  +TG+GKT +F +P++ 
Sbjct: 5   TFADLGVPAPLVKALAERGIAEPFPIQAATLPDSLAGRDVLGRGKTGSGKTLAFSIPLVA 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L   R +   P  L+L PTRELA Q+    E       L V  + GG+    Q   L  
Sbjct: 65  ALTGIRRQASRPSGLVLAPTRELATQITAALEPMATAAGLRVTTIYGGVSQGRQVSALRG 124

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++  PGR+ D   +  + ++N+ + V+DEAD M D+GF+P +  I +  P   Q L
Sbjct: 125 GIDIVVACPGRLEDLMQQKVISLDNVTVTVLDEADHMADLGFLPGVTRILAATPRGGQRL 184

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ + + K+ + FL NP    VN  +     + H          KK  + Q    +
Sbjct: 185 LFSATLDNGVDKLVQRFLDNPVLHSVNEAAEAPAQMTHHVFHVGGVQEKKDLVHQLASGT 244

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K     L   L + G     +HGN+ Q +R + L+ F  G  +++VA
Sbjct: 245 ----GRRILFMRTKHQARKLAKQLTESGVPSVDLHGNLSQPARERNLAAFSSGEARVLVA 300

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   T+V  E  +    + 
Sbjct: 301 TDIAARGVHVDDVELVVHVDPPMEHKAYLHRSGRTARAGSDGDVVTVVLPEQRRDTQQLL 360

Query: 362 K 362
           +
Sbjct: 361 R 361


>gi|327277814|ref|XP_003223658.1| PREDICTED: probable ATP-dependent RNA helicase DDX59-like [Anolis
           carolinensis]
          Length = 619

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 115/404 (28%), Positives = 193/404 (47%), Gaps = 12/404 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           ++F        +   +  +GY  PTP+Q++ IP+ L   D+   A TG+GKTA+F+LP+ 
Sbjct: 202 VEFEHCSFPDVLSSNLKKSGYEVPTPVQMQMIPVGLLGRDIVATADTGSGKTAAFLLPV- 260

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119
             + K    V  P  LIL PTRELA Q+    ++      N+   LL+GG+P   Q  +L
Sbjct: 261 --IIKAMGEVEAPSALILTPTRELAIQIEKQAKELMVGLPNMRTVLLVGGLPLPPQLHRL 318

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ++   V+I TPGR+L+   +  + ++NI+I+V+DEAD ML MGF   + +I   +P   Q
Sbjct: 319 KQNVKVIIATPGRLLEILKQSSVELHNIKIVVVDEADTMLKMGFQQQVLDILENIPRDHQ 378

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           T+L SATM   +++++   LQN  +I +   +     +    +       KK        
Sbjct: 379 TILVSATMPFGIEQLANRLLQNHVKITIGEKNQPCSNVRQIILWVEEPSKKKKLFEILND 438

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +        +    +    +      +  G    ++H +  Q  R  IL    +   +++
Sbjct: 439 KKLFKPPILVFVECKLGADLLSDAVHKITGLETISMHADKTQTERNTILQGLFQEKYEVV 498

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           V++ +  RGLD+ +V  V NFD+P+  + Y+H++GR GR G  G A T +     K    
Sbjct: 499 VSTGILGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRAGRLGHSGTAITFINNNSKKLFWD 558

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403
           + K ++     L   L  LN P        H+  RK     ++S
Sbjct: 559 VVKRVKPTGTILPPQL--LNSP------YLHDQKRKEQQRSKQS 594


>gi|312221996|emb|CBY01936.1| hypothetical protein [Leptosphaeria maculans]
          Length = 602

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 112/372 (30%), Positives = 177/372 (47%), Gaps = 6/372 (1%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
           A +  PTPIQ  T P +L   D+ G+A+TG+GKT +F +P +  +       R     ++
Sbjct: 206 AKFTAPTPIQAATWPFLLSGRDMVGVAETGSGKTLAFGVPCVRYISSLPKEKRKGIKAVI 265

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138
                  A    +      N      + + G   +       R A +++ TPGR+ D   
Sbjct: 266 VSPTRELAVQIYDQLVALANPAGLEVVCVYGGVPKDPQVAACRKAHIVVATPGRLNDLIG 325

Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198
            G   ++  E +V+DEADRMLD GF   I+ I S  P  RQTL+F+AT    +++++  F
Sbjct: 326 DGSADLSKAEYVVLDEADRMLDKGFEEPIRQIVSQTPKKRQTLMFTATWPPSVRELASTF 385

Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ------QLLQSQDTMKNGIIFC 252
           + +P +I +    S                       +      Q    ++     ++FC
Sbjct: 386 MNSPVKITIGDNVSGELRANVRIKQVVEVIDPHAKEQRLIQLLKQYQSGKNKDDRILVFC 445

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
             KK  V + + +  +GF V  IHG++ Q  R   L+ FKEG + L+VA+D+AARGLDIP
Sbjct: 446 LYKKEAVRIENFIRMKGFRVGGIHGDLTQEKRSASLAAFKEGHVPLLVATDVAARGLDIP 505

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
            V  V N   P  AE+Y+HRIGRTGRAG+ G A T   + D     ++  +++     + 
Sbjct: 506 AVKVVINVTFPLTAEDYVHRIGRTGRAGKEGLAITFFTEHDKGLSGSLINVLKAANQLVP 565

Query: 373 GDLSSLNPPLEK 384
            +L      ++K
Sbjct: 566 EELMKFGTTVKK 577


>gi|113969304|ref|YP_733097.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113883988|gb|ABI38040.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 451

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 127/441 (28%), Positives = 208/441 (47%), Gaps = 24/441 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA+LG++  +   +  A    PT +Q   IP +L   DV  ++QTG+GKT +F LP+L
Sbjct: 17  LTFAELGVNAALCSVLPAA-LKHPTRVQQLAIPAILAGRDVLALSQTGSGKTLAFGLPLL 75

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             + +   +          P+    AQ             +T AL        +  K   
Sbjct: 76  QAIHQQLQQQVGLAGAESVPSLASNAQALVLVPTRELAQQVTTALHALASKLSSSLKIQL 135

Query: 121 RGADVLI---------------CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
               +                  TPGR+LD   +  + +++I+ LV+DEADR+L+MGF P
Sbjct: 136 LCGGIAQEEQLAELAAKPQLVVATPGRLLDLCTQSHISLDSIKYLVLDEADRLLEMGFWP 195

Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
            +Q + +++   +QTLLFSAT+ + L  ++   L N       +  +         +   
Sbjct: 196 DVQKLMAMMLKRKQTLLFSATLPEALDALAGKLLTNNPLRVEASTRNAIAAEIEERLYFV 255

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
            + SK  AL+  L Q Q      ++F + + +   +   L K G +  A+HG  DQ  R 
Sbjct: 256 NKGSKAQALIALLKQYQWP--QVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRS 313

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
           + L++FK   IQ++VA+DL ARG+ +  +  V N D+P  A  Y+HRIGRT RAG  G A
Sbjct: 314 QTLADFKANRIQVVVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLA 373

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLN-GDLSSLNPPLEKI--DIAQHNHARKNNPIPQK 402
            +LV   ++  + AI  L  +++   +  D    + P E+   D A+HN A K  P  ++
Sbjct: 374 ISLVCHGEMPSLSAIRNLTARELPLASLADFPVTDKPSERAREDGAEHNVAPKRPPRDKQ 433

Query: 403 STGFDRRKKNYSSQKSHIPLK 423
           +   +RR  N  S K+    +
Sbjct: 434 A---NRRSLNKHSVKAFKGKR 451


>gi|326479542|gb|EGE03552.1| ATP-dependent RNA helicase DBP5 [Trichophyton equinum CBS 127.97]
          Length = 481

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 98/399 (24%), Positives = 194/399 (48%), Gaps = 19/399 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +LGL   V+  +    + +P+ IQ + +PL++     ++ G +Q+GTGKTA+FVL +
Sbjct: 81  SFEELGLDEAVLRGLRQMRFSRPSKIQERALPLLMSNPPQNMIGQSQSGTGKTAAFVLNV 140

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ LE     + +P+ LIL P+RELA Q+    +  G    +    +   +P E    + 
Sbjct: 141 LSRLEVTPEMINVPQALILAPSRELARQIVGVVQVMG--SFIEGLKIATLVPMETNRNQP 198

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              + V+            R     +   +++ +  + +   G       + S +P T Q
Sbjct: 199 VEASLVVGTPGTVQDFIRKRLFNTQHVKVLVLDEADNMLDQQGLGDQCIRMKSSLPKTTQ 258

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT  D + + +  F  N  ++ +     T E I+  ++   +   K   L++   
Sbjct: 259 IVLFSATFPDSVVRYAHKFAPNANQLTLKHEELTVEGIKQLYLDCDSTEHKYEILVK--F 316

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+ + IIF   + + V +   + ++G +V ++ G ++ + R +++ +F++GT +++
Sbjct: 317 YGLLTIGSSIIFVKTRASAVEIERRMVEEGHTVVSLTGGVEGQKRDEVIDSFRKGTAKVL 376

Query: 300 VASDLAARGLDIPDVGHVFNFDVPN-----------RAENYIHRIGRTGRAGRHGKAFTL 348
           + +++ ARG+D+  V  V N+D+P              + Y+HRIGRTGR GR G A + 
Sbjct: 377 ITTNVLARGIDVQTVSMVINYDIPELHAPGAGERIADPQTYLHRIGRTGRFGRVGVAVSF 436

Query: 349 VA-KEDIKHIDAIEKLIEKKVDWLNG-DLSSLNPPLEKI 385
           V+ KE+   +  I+K     +  ++  D   +   ++K+
Sbjct: 437 VSNKEEWTMLMDIQKYFGTDIMRVDSRDWDEVEDVVKKV 475


>gi|327307882|ref|XP_003238632.1| ATP-dependent RNA helicase DBP5 [Trichophyton rubrum CBS 118892]
 gi|326458888|gb|EGD84341.1| ATP-dependent RNA helicase DBP5 [Trichophyton rubrum CBS 118892]
          Length = 481

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 98/399 (24%), Positives = 194/399 (48%), Gaps = 19/399 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +LGL   V+  +    + +P+ IQ + +PL++     ++ G +Q+GTGKTA+FVL +
Sbjct: 81  SFEELGLDEAVLRGLRQMRFSRPSKIQERALPLLMSNPPQNMIGQSQSGTGKTAAFVLNV 140

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ LE     + +P+ LIL P+RELA Q+    +  G    +    +   +P E    + 
Sbjct: 141 LSRLEVTPEMINVPQALILAPSRELARQIVGVVQVMG--SFIEGLKIATLVPMETNRNQP 198

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
              + V+            R     +   +++ +  + +   G       + S +P T Q
Sbjct: 199 VEASLVVGTPGTVQDFIRKRLFNTQHVKVLVLDEADNMLDQQGLGDQCIRMKSSLPKTTQ 258

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT  D + + +  F  N  ++ +     T E I+  ++   +   K   L++   
Sbjct: 259 IVLFSATFPDSVVRYAHKFAPNANQLTLKHEELTVEGIKQLYLDCDSTEHKYEILVK--F 316

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+ + IIF   + + V +   + ++G +V ++ G ++ + R +++ +F++GT +++
Sbjct: 317 YGLLTIGSSIIFVKTRASAVEIERRMVEEGHTVVSLTGGVEGQKRDEVIDSFRKGTAKVL 376

Query: 300 VASDLAARGLDIPDVGHVFNFDVPN-----------RAENYIHRIGRTGRAGRHGKAFTL 348
           + +++ ARG+D+  V  V N+D+P              + Y+HRIGRTGR GR G A + 
Sbjct: 377 ITTNVLARGIDVQTVSMVINYDIPELHAPGAGERIADPQTYLHRIGRTGRFGRVGVAVSF 436

Query: 349 VA-KEDIKHIDAIEKLIEKKVDWLNG-DLSSLNPPLEKI 385
           V+ KE+   +  I+K     +  ++  D   +   ++K+
Sbjct: 437 VSNKEEWTMLMDIQKYFGTDIMRVDSRDWDEVEDVVKKV 475


>gi|308456140|ref|XP_003090535.1| hypothetical protein CRE_31571 [Caenorhabditis remanei]
 gi|308262642|gb|EFP06595.1| hypothetical protein CRE_31571 [Caenorhabditis remanei]
          Length = 745

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 116/468 (24%), Positives = 207/468 (44%), Gaps = 25/468 (5%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F D  LS +    + +  Y KPT IQ  TI   L   DV G A+TG+GKT + V+P+L
Sbjct: 75  LRFTDFPLSWRTQEGLKENEYTKPTEIQRDTIAHSLSGADVVGAAKTGSGKTLALVIPIL 134

Query: 61  TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             L + R         L++ PTRELA Q        GK++  +  L+IGG     +  ++
Sbjct: 135 EALWRARWSPEYGLGALVISPTRELALQTFSTINAVGKHHGFSCGLVIGGSEVSYEKNRI 194

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++      +       ++  ++++ILV+DEADRMLDMGF   + +I + +P  RQ
Sbjct: 195 SGINIIVCTPGRLLQHMDENEQMNCDSLQILVLDEADRMLDMGFAKQLNSIVNNLPSERQ 254

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTP-SSTAETIEHCFVATYAQYSKKCALLQQL 238
           TLLFSAT T  ++ +      +P  + V+   S+              + SK   L   +
Sbjct: 255 TLLFSATQTRNVKDLCRVCTNDPVFVSVHENASAATPDNLKQSYVIVEEESKINTLWSFI 314

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +       +   ++   +    S  + G  V  + G ++Q+ R++  + F E    +
Sbjct: 315 EAHKKKKSLIFVSSCKQARFLTEVFSQLRPGLPVMGLWGTMNQKKRIETFTKFDEAKAAV 374

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHI 357
           ++A+D+A+RGLD   +  V   D P + ++YIHR+GR+ R    G +  +V   ++   I
Sbjct: 375 LIATDVASRGLDFEHIDWVIQMDCPAQIDDYIHRVGRSARMDDSGNSLLMVTSSQESPMI 434

Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             +EK                N P+E++ I  H  A  +  +  ++   +  +    +QK
Sbjct: 435 AKLEKH---------------NIPIEELKI--HPDAVTDVRLKLRAMLAESPELKEWAQK 477

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRG-----NMPAFMLPKNRGK 460
           S +    +    + ++    N  +   F       ++P     K +  
Sbjct: 478 SIVAYLRAVHTMRDKRVFDVNSINVAAFSDSFGLVSVPRLRFLKGQKT 525


>gi|160876048|ref|YP_001555364.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|160861570|gb|ABX50104.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315268244|gb|ADT95097.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 427

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 142/422 (33%), Positives = 214/422 (50%), Gaps = 24/422 (5%)

Query: 5   DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI-- 62
            LG+   ++  + +  YV PT +Q  TIP VL   DV   A TG+GKTA+F +P+L    
Sbjct: 13  QLGIIAPLLNRLTELAYVSPTSVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLV 72

Query: 63  -LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNKKL 119
             +         R L+L PTRELA QVAD+F  Y  + N    +    GG+   AQ + L
Sbjct: 73  EAKTDDKTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQSL 132

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
             GADVL+ TPGR+LD  +   + +N +  LV+DEADRML +GF   +  +   +P  +Q
Sbjct: 133 RAGADVLVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQ 192

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  +E+++++   L +P   +  +     E                   L   L
Sbjct: 193 TLLFSATFPEEVRELTAKLLNDPLEYQFQS-----EQESTIHQRVITVNRPMKTALLAHL 247

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
             +      +IF + K    +L   L K+G S    HG+  Q +R ++L  FK G I ++
Sbjct: 248 IKEHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVL 307

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           +A+D+AARG+DI  +  V NFD+P    +Y+HRIGR+GRAG  G A TL++ ED  H   
Sbjct: 308 IATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGV 367

Query: 360 IE-----KLIEKKV------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408
           IE     KL+ +++      D +  +L     P+ K +       +K   +P  +  F  
Sbjct: 368 IEKKNKLKLVREQIVGFEADDEMPAELLEQAKPVAKPE---GTGKKKRKQLPPANAEFWG 424

Query: 409 RK 410
           +K
Sbjct: 425 KK 426


>gi|302869748|ref|YP_003838385.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302572607|gb|ADL48809.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca
           ATCC 27029]
          Length = 417

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 126/359 (35%), Positives = 182/359 (50%), Gaps = 5/359 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA  GL+P +V  +   G   P PIQ  TIP  L   DV G  +TG+GKT +F LP+L 
Sbjct: 7   TFAATGLAPALVSELAAQGISAPFPIQAATIPDSLAGRDVLGRGRTGSGKTLAFGLPLLH 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                RAR   P  L+L PTRELAAQV +    Y     L  A ++GG+    Q   L  
Sbjct: 67  RTAGRRARPGRPLALVLVPTRELAAQVTEALAPYAATLGLRCATVVGGLSLTRQAAALRA 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+VL+ TPGR+ D  +RG   ++ + I V+DEAD+M DMGF+P +  +   V    Q +
Sbjct: 127 GAEVLVATPGRLHDLIDRGDARLDQVTITVLDEADQMADMGFLPQVTKLLEQVAPGGQRM 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   + ++   FL +P    V+  ++T   + H  +   A+          L   
Sbjct: 187 LFSATLDRGVDRLVRRFLTDPVTHSVDPGTATVTAMTHHVLHLDAEDK-----PAALAHI 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K     +   L  +G    A+HG   Q  R +IL  F+ G +  +VA
Sbjct: 242 AAREGRTIVFIATKHRADRVARQLLAKGVRAAALHGGKSQPQRTRILEQFRTGQVTALVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +D+AARG+ +  +  V N D P  A++Y+HR GRT RAG  G   TLV  +  + +  +
Sbjct: 302 TDVAARGIHVDGLDLVVNADPPTEAKDYLHRGGRTARAGESGTVVTLVLPDQRRDVARL 360


>gi|300707566|ref|XP_002995986.1| hypothetical protein NCER_100997 [Nosema ceranae BRL01]
 gi|239605237|gb|EEQ82315.1| hypothetical protein NCER_100997 [Nosema ceranae BRL01]
          Length = 408

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 97/376 (25%), Positives = 170/376 (45%), Gaps = 12/376 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
           D+ D  L+ ++V  + + G+ KP+ IQ   I  ++   D+   AQ+GTGKT +F +  L 
Sbjct: 20  DWEDYSLNEELVRGIYNMGFEKPSHIQKVAIKPIIDGRDIRAQAQSGTGKTGAFAIGALQ 79

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            ++K        + L++  TRE+AAQ +D F+++    N+ + LL GG       K L  
Sbjct: 80  CVDKN---SYFTQVLVIANTREIAAQNSDRFKQFSMYMNINICLLSGGSHVSQDIKNLRC 136

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              V++ TPGR+      G L  + I++ +IDEAD ML  GF   ++ I   +      +
Sbjct: 137 SPHVVVGTPGRVDQMIQEGHLKTDKIKLFIIDEADEMLQAGFQEQVKAIFKSLNRKEVQI 196

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ- 240
              +   +E +      +     I      +        F       +        +   
Sbjct: 197 AMFSATYEEEELRVSEEVLKDPVIIDLRQDNQTLAGIQQFYINLGPDNSPRRDDYSVKCA 256

Query: 241 ------SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294
                    +    IIF   K     +  SL++       I  ++ Q  R  +L+ F+ G
Sbjct: 257 TLIDLLKNYSFGQTIIFVTSKVKAAYVYSSLKECDIPCELISSDLTQSEREDVLNRFRSG 316

Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE--NYIHRIGRTGRAGRHGKAFTLVAKE 352
           + +++++S L +RG+DI ++  VF  DVP   +   YIHRIGR+GR G+ G A  +++  
Sbjct: 317 SNRILISSGLLSRGVDIQNLSVVFCLDVPPEHKKSTYIHRIGRSGRYGKKGFAINILSDH 376

Query: 353 DIKHIDAIEKLIEKKV 368
           +  ++  IEK    K+
Sbjct: 377 EFINLTKIEKFYNTKI 392


>gi|125559478|gb|EAZ05014.1| hypothetical protein OsI_27195 [Oryza sativa Indica Group]
          Length = 414

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 126/397 (31%), Positives = 208/397 (52%), Gaps = 11/397 (2%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
            G+  PT IQ + IP  LQ  DV G+ QTG+GKTA+F LP++  L +   R R     +L
Sbjct: 1   MGWKAPTRIQAEAIPFALQGRDVIGVGQTGSGKTAAFALPIIQALLEHEHRPRF-LACVL 59

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR-ILDHF 137
            PTRELA Q+A  FE  G   +L  ++LIGGIP  +Q   L +   V++ TPGR +    
Sbjct: 60  APTRELAIQIAKQFEALGSAISLQCSVLIGGIPRTSQTISLAKRPHVVVGTPGRLLDHLT 119

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
           N      N ++ LV+DEAD +L + F   + +I +++P  R+T LFSATMT++++K+   
Sbjct: 120 NTKGFSFNKLKYLVLDEADDLLKVDFQKAVDDILNVIPKERRTFLFSATMTEKVKKLRRA 179

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
            L+NP ++EV +  S  +T+       Y   +K        + ++      ++F    ++
Sbjct: 180 CLKNPVKVEVASKYSLVDTL---RQDLYVVPAKYKDCYLIHVLNKMPGSMIMVFVRTCES 236

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
              L   L    F   +I G + Q  R+  L+ F+     ++V +D+A+RGLDI  V  V
Sbjct: 237 TRLLALMLRNLRFKAISISGQMSQDKRLGALNRFRTRDCNILVCTDVASRGLDIQGVDVV 296

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI-EKKVDWLNGDLS 376
            N+D P  +++YIHR+GRT RAG+ G A +LV + + +     E+ +  +++     D  
Sbjct: 297 INYDFPLNSKDYIHRVGRTARAGQSGYAVSLVNQFEGEFFKLTEQFLGGEEIPARKVDAD 356

Query: 377 SLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
            +    E+I  ++    +  N      +G+ +R +  
Sbjct: 357 EIMILHERIYDSKRIALKTMNE-----SGYHKRMRRR 388


>gi|196007058|ref|XP_002113395.1| hypothetical protein TRIADDRAFT_50410 [Trichoplax adhaerens]
 gi|190583799|gb|EDV23869.1| hypothetical protein TRIADDRAFT_50410 [Trichoplax adhaerens]
          Length = 404

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 167/382 (43%), Gaps = 31/382 (8%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH--DVCGIAQTGTGKTASFVLPM 59
            F +L L+  V+  V   G+  P+ IQ   +PL+L     ++   +Q+GTGKTA+F L +
Sbjct: 35  SFEELNLAEAVLKGVYGMGFNTPSKIQETALPLLLGAKPSNMIAQSQSGTGKTAAFALCL 94

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
                               PT ELA Q     ++  K  ++ +A+   G     + +K 
Sbjct: 95  -------------------SPTLELAQQTGKVCKQMSKFLDIKIAMATRGEEHGRRREKK 135

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++      +     +          ++ +    +   G       +   +  + Q
Sbjct: 136 VEQI-IIGTPGTILDWIRLKLFDPSKLGIFVLDEADVMIDTQGHRDQSIKVHRHLKKSAQ 194

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  D + K +E+ + NP  I +     +   I+  ++    +  K  A     +
Sbjct: 195 FLLFSATYEDRVMKFAESIVPNPVIIRLKRSEESLSNIKQFYIRCQDRQEKFEA--LSNI 252

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               ++   ++FC+ KK+   L   +++ G +V  + G+     RM ++  ++ G  +L+
Sbjct: 253 YGTISIGQAMVFCHTKKSAQWLAMKMKEDGHAVALLTGDNSPEERMFVIDRYRSGKEKLL 312

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           V +++ ARG+D+  V  V N+DVP         E Y+HRIGRTGR G+ G A   V +  
Sbjct: 313 VTTNVCARGIDVEQVSVVINYDVPLDGRGIPDCETYLHRIGRTGRFGKKGIAINFVDSDR 372

Query: 353 DIKHIDAIEKLIEKKVDWLNGD 374
              ++ +IEK   +K++ +  D
Sbjct: 373 SFNNLKSIEKHFGRKINQIIAD 394


>gi|154340431|ref|XP_001566172.1| ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134063491|emb|CAM39671.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 897

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 103/363 (28%), Positives = 171/363 (47%), Gaps = 4/363 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L +S +    +    Y   TPIQ   + L L   DV G A+TG+GKT  FV+P+L 
Sbjct: 70  KFTELPISQRTQMGLERGHYTALTPIQKGALHLALAGFDVLGAAKTGSGKTLCFVIPVLE 129

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L +      M     +L PTRELA Q+    +  G  + L+ ALL GG     + K+L 
Sbjct: 130 RLYREHWSSDMGVGALLLSPTRELALQIFKVMQLVGYKHVLSAALLTGGRDVREERKRLH 189

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             + ++      +    +  +L+++N+++  +DEADR+LDMGF   I +I   +P  RQ+
Sbjct: 190 AISIIVGTPGRVLHHLQDDAELVLDNMQLFCMDEADRLLDMGFREAITSILKYLPPQRQS 249

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT T ++Q +++  L+NP+ +     ++    +  C      +  +K   L   L+
Sbjct: 250 LLFSATQTTDVQMLAQMSLKNPRYVSTQAITAAPTPMTLCQNFVVVELHRKLDALLMFLK 309

Query: 241 SQDTMKNGIIFCNQKK---NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
                K  +      +     +     L+K       +   + Q  R ++   F      
Sbjct: 310 RHPNDKIVVFVSTCNQVKFMHLAFSKILKKMRIPSMCLTSKMKQFRREEVFLTFCRCKSA 369

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
           ++  +D+A+RGLD P V  V  +D P  A+ YIHR GRT RAG  G +   +   +   +
Sbjct: 370 VLFCTDVASRGLDFPLVHWVVQYDCPESAQTYIHRAGRTARAGARGVSLLFLTPREAPML 429

Query: 358 DAI 360
             +
Sbjct: 430 SYL 432


>gi|317151291|ref|XP_001824556.2| DEAD/DEAH box RNA helicase [Aspergillus oryzae RIB40]
          Length = 593

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 110/406 (27%), Positives = 161/406 (39%), Gaps = 27/406 (6%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D GL P V   V    Y  PTPIQ   IP V+  HD+  IAQTG+GKTA+F++P+L+
Sbjct: 136 SFDDAGLHPIVRENVKLCHYDIPTPIQAYAIPAVMTGHDLIAIAQTGSGKTAAFLIPVLS 195

Query: 62  ILEKGRARVRMPRTL-------------------ILEPTRELAAQVADNFEKYGKNYNLT 102
            L     ++  PR                     I+ PTREL+ Q+ D   +      L 
Sbjct: 196 KLMGKAKKLAAPRPNLADGFNPIVDAVRAEPLVLIVAPTRELSTQIFDEARRLCYRSMLR 255

Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162
             ++ GG P   Q  +L++G D+LI TPGR+LD  ++  +L        I +    L + 
Sbjct: 256 PCVVYGGAPVRDQRDELQKGCDILIGTPGRLLDFMDKPHILSLRRVKYTIIDEADELLLA 315

Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222
                 N         +       M           L        +              
Sbjct: 316 DWESDFNKIMSGGDMNEDADHRYMMFSATFNKECRQLARKFLAGDHVRIRIGRPGSTHIN 375

Query: 223 ATYAQYSKKCALLQQLLQS---QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279
                   +  L +Q L            +IF N K     L   L   G    +IH + 
Sbjct: 376 VDQTIVYSEEHLKKQCLYDLLLAMPPSRTLIFVNSKAQADLLDDYLYNMGLPSTSIHSDR 435

Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNR----AENYIHRIGR 335
            QR R   L  F+     ++VA+ ++ARGLDI +V HV N+D+P +       Y+HRIGR
Sbjct: 436 TQREREDALRAFRTAKCPILVATGVSARGLDIKNVMHVVNYDLPRQSHGGIVEYVHRIGR 495

Query: 336 TGRAGRHGKAFTLVAKE-DIKHIDAIEKLIEKKVDWLNGDLSSLNP 380
           T R G  G A +    + D      + +L+ +    +   L S  P
Sbjct: 496 TARIGNEGLATSFYNHDRDSDLAPDLVRLLLETNQKIPDFLESYKP 541


>gi|153839306|ref|ZP_01991973.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus AQ3810]
 gi|149747170|gb|EDM58158.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus AQ3810]
          Length = 412

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 143/424 (33%), Positives = 220/424 (51%), Gaps = 12/424 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS +++ A+    + KPT IQ   IP +L   D+  +A TG+GKT ++ LP+L
Sbjct: 1   MPFSTLSLSSELIHALPK-DFKKPTDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  +    IL PTRELA QV++   + G+  +L    L GG+  E Q+  L 
Sbjct: 60  EKLGVNPEQKAL----ILVPTRELAMQVSEAINQVGQALDLNTVCLCGGVDKEQQHHALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ T GR++D  N G  L N    LV+DEADR+LDMGF P +QNI  L+   RQT
Sbjct: 116 TNPHILVATTGRLVDLANNGLDLSNI-HYLVLDEADRLLDMGFWPDVQNIAGLISNQRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT +DEL+  ++  +Q PK++  +  +ST + I             K  +      
Sbjct: 175 AMFSATFSDELKGKAKLLMQAPKQVAAHQENSTNQDIAETLHLVNKGSKTKALIEL---I 231

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            ++     ++F   K+N   L   L K G S  A+HGN  Q  R + L+ FK G IQ+++
Sbjct: 232 QKNAWTQVLVFIGAKENADGLAKKLNKAGISTNALHGNKSQDEREEALAQFKSGQIQVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG  G A +LV   ++  ++AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVAMSLVCHGEMDALNAI 351

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
             L ++ +     DL    P  +K    +   A ++    +++      K+     K   
Sbjct: 352 RHLTQRALPV--QDLVGF-PVTDKPSTGESKRAPRDKKANRRTHAKKSIKQFQGKSKRPA 408

Query: 421 PLKE 424
           P  +
Sbjct: 409 PSAK 412


>gi|146197807|dbj|BAF57619.1| DEAD box polypeptide 19 protein [Dugesia japonica]
          Length = 434

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 88/379 (23%), Positives = 160/379 (42%), Gaps = 11/379 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F DL L  +++  +   G+ KP+ IQ + +P++L+    ++   +Q+GTGKTA+F+L M
Sbjct: 49  SFEDLQLKSELLNGISSMGFRKPSSIQERALPMLLENQPKNLIAQSQSGTGKTATFLLTM 108

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++      +              A+VA    K+  N  +T A+              
Sbjct: 109 LSKIDVNDPFCQCLCMAPTRELVNQIAEVAIIMSKFMNNVKITCAIKGLSPDILEGQINS 168

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +              D+ +           ++ +    +    F+   + I S V    Q
Sbjct: 169 QIIIGTPGTLKFWTTDNSSLYFNPKKLKVFVLDEADILIETPEFLNIAKRIKSKVTNNCQ 228

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            LLFSAT  + +   + +F+  P    +     T + I+  ++   +   K   L+    
Sbjct: 229 ILLFSATYDERVMDFAHDFVPQPNEFSIKPQELTLKNIKQFYIQMKSSEDKYPKLIDIYG 288

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                    IIFC  +K    L  +LE+       + G +D   R + + +F+ G  +++
Sbjct: 289 MKSMGQC--IIFCESRKMACYLQKALERDSHLSSLLTGELDVLERQRQIDDFRNGKSRVL 346

Query: 300 VASDLAARGLDIPDVGHVFNFDVPN------RAENYIHRIGRTGRAGRHGKAFTL-VAKE 352
           +A++L +RG+DIP V  + N+D+P         E Y+HRIGR+GR G+ G      V  E
Sbjct: 347 IATNLCSRGIDIPQVNLIINWDMPKTKDGKPDCETYLHRIGRSGRFGKTGLTINFIVNDE 406

Query: 353 DIKHIDAIEKLIEKKVDWL 371
           D+     I      K+D +
Sbjct: 407 DLVIQQKIVDRYGAKIDEM 425


>gi|300120679|emb|CBK20233.2| unnamed protein product [Blastocystis hominis]
          Length = 536

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 114/419 (27%), Positives = 174/419 (41%), Gaps = 37/419 (8%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL+  VV  V      +PTP+Q   IP VL   +V G+++TG+GKTA F LP+L
Sbjct: 48  LTFADLGLNEWVVKCVNSMQITRPTPVQKYCIPEVLAGKNVTGVSETGSGKTAVFALPIL 107

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L            ++L PTRELA Q+ D  + +G   ++   L+IGG  F  Q + L 
Sbjct: 108 QRLST---DPYGIFAVVLTPTRELAIQIDDQMQAFGAPIHVRTTLIIGGQSFVKQAEALR 164

Query: 121 RGADVLICTP-GRILDHFNRGKLLMNNIEILVIDEADRMLDMG----FIPYIQNITSLVP 175
           +   V+I TP   +         +   +  +V+DE DRML           +  + S   
Sbjct: 165 KRPHVVIATPGRFLQHLKTADPPVTKRLGFIVLDECDRMLSDSLKTEVSEIVSLLKSRCV 224

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
              Q L  +AT    ++     F +     +        E I      T +         
Sbjct: 225 THPQFLFLTATYDASVRSELVEFAEIAHPQKSMDIIPDYEYIPEASKQTNSTVDSLDEFY 284

Query: 236 QQLLQSQD----------------------------TMKNGIIFCNQKKNVVNLCHSLEK 267
                 Q                                + I+FCN  + V  L   L  
Sbjct: 285 LLTPDHQYEPRFSPSNPVNPREDAEESEEDAKKRLLHKASAIVFCNTCRMVQLLSEMLRA 344

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
                  +H  + Q  R   L+ F+     ++V +D+A+RGLDIP V  V N+D+P    
Sbjct: 345 FQIENVPLHSLLSQNQRDAALAKFRNNRTAVLVCTDVASRGLDIPQVDLVTNYDLPKDPF 404

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG-DLSSLNPPLEKI 385
           +YIHR+GRT RAGR G A + V    +  + AIE +  K+     G +  ++   L ++
Sbjct: 405 DYIHRVGRTARAGRAGTAVSFVTLPSVGKLQAIEAMTGKRCREFEGVEEENVLKILNRV 463


>gi|119715705|ref|YP_922670.1| DEAD/DEAH box helicase domain-containing protein [Nocardioides sp.
           JS614]
 gi|119536366|gb|ABL80983.1| DEAD/DEAH box helicase domain protein [Nocardioides sp. JS614]
          Length = 479

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 131/414 (31%), Positives = 208/414 (50%), Gaps = 12/414 (2%)

Query: 10  PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP------MLTIL 63
           P++  A+     V P  IQ  T+ + L   D+ G A+TGTGKT +F +P           
Sbjct: 3   PEICDALERVNIVTPFAIQEMTLSVALMGTDLIGQARTGTGKTLAFGIPVLQRSVAPKDP 62

Query: 64  EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123
           +        P+ LI+ PTRELA QV+ +    G +  L V  + GG+ +E Q   L+ G 
Sbjct: 63  DYAELPQGKPQALIVAPTRELALQVSGDLALAGADRGLRVLTVYGGVGYEPQLDALQEGV 122

Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183
           D+++ TPGR++D  NR  L ++++  LV+DEAD MLD+GF+P ++ I ++ P TRQT+LF
Sbjct: 123 DIVVGTPGRLIDLANRRALDISHVHALVLDEADEMLDLGFLPDVERILAMTPETRQTMLF 182

Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243
           SATM   +  ++               S    T+       Y  +      +   +   +
Sbjct: 183 SATMPAAIVALART-HMRHPMNIRAESSYENATVPATAQFIYQAHDLDKPEIIGRVLQAE 241

Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303
                I+F   K+    +   L ++GFS   +HG++ Q +R K L+ F+E  ++++VA+D
Sbjct: 242 DAGKVIVFTRTKRQAQRVADDLAERGFSASPLHGDMAQVAREKALTKFREDKLRVLVATD 301

Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
           +AARG+D+  V HV N+  P   + Y+HRIGRTGRAG  G A T V   D+     I K 
Sbjct: 302 VAARGIDVAGVSHVINYSCPEDDKTYVHRIGRTGRAGASGIAITFVDWADLARWKMINKA 361

Query: 364 IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI-----PQKSTGFDRRKKN 412
           ++   D      S+         IA     R  +P      P++  G +RR+++
Sbjct: 362 LDLPFDEPQETYSTSEHLYHDQGIAPGTKGRIVDPAPVERKPREDRGGERRERS 415


>gi|297833410|ref|XP_002884587.1| hypothetical protein ARALYDRAFT_477953 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330427|gb|EFH60846.1| hypothetical protein ARALYDRAFT_477953 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1097

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 124/337 (36%), Positives = 189/337 (56%), Gaps = 2/337 (0%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F   GL P+++  +L AG+  PTPIQ +T P+ LQ  D+  IA+TG+GKT  +++P  
Sbjct: 436 ITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAF 495

Query: 61  T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
             +          P  LIL PTRELA Q+ D   ++G++  ++   L GG P   Q K+L
Sbjct: 496 ILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKEL 555

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           ERGAD+++ TPGR+ D     K+    + +LV+DEADRMLDMGF P I+ I + +   RQ
Sbjct: 556 ERGADIVVATPGRLNDILEMKKIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEISPRRQ 615

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TL+++AT   E++K++ + L NP ++ +      A               +K   L+Q+L
Sbjct: 616 TLMYTATWPKEVRKIASDLLVNPVQVNIGKVDELAANKAITQYVEVVPQMEKERRLEQIL 675

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
           +SQ+     II     K + +       + F    IHG+  Q  R  +LS F+ G   ++
Sbjct: 676 RSQERGSKVII-FCSTKRLCDHLARSVGRHFGAVVIHGDKTQGERDWVLSQFRSGKSCIL 734

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336
           +A+D+AARGLDI D+  V  +D P   E+Y+HRIGRT
Sbjct: 735 IATDVAARGLDIKDIRVVITYDFPTGVEDYVHRIGRT 771


>gi|212634502|ref|YP_002311027.1| DEAD box helicase [Shewanella piezotolerans WP3]
 gi|212555986|gb|ACJ28440.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 440

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 135/430 (31%), Positives = 223/430 (51%), Gaps = 19/430 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLGL P+++  +    Y  PT IQ  TIP V+   DV G A TG+GKTA+F LP++ 
Sbjct: 23  SFADLGLIPELLATLDALAYQSPTAIQQSTIPAVIAGSDVLGGAITGSGKTAAFALPIIQ 82

Query: 62  ---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQN 116
                 K   +     +LIL PTRELA QVAD+F +Y +N      V  + GG+   +Q 
Sbjct: 83  LLAKSAKQTRQSNYVSSLILVPTRELAQQVADSFMRYAQNIKPNLKVLAVYGGVSTNSQM 142

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           + L  GAD+L+ TPGR+LD  +   + ++ +  LV+DEADRML +GF   +  +   +P 
Sbjct: 143 QSLRGGADILVATPGRLLDLMSSNAVKLDKVSSLVLDEADRMLSLGFTDELAALLEKLPA 202

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            +QTLLFSAT  +E+  ++++ L NP  +++ +     E               +   L 
Sbjct: 203 KKQTLLFSATFPEEVSLLTQSLLNNPVEVQLQS-----EEKNTLVQRVITVNRNRKTPLL 257

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L  Q+  +  +IF + K     L   L+  G +    H +  Q +R ++L  FK G  
Sbjct: 258 VELIKQNDWQQILIFASAKYTCNRLAQKLDNAGITAEIFHSDKGQGARTRVLDGFKRGET 317

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           ++++A+D+AARG+DI  +  V N+++P    +Y+HRIGR+GRAG  G A +L++ ++ +H
Sbjct: 318 RVLIATDIAARGIDIEKLPIVINYELPRSPADYMHRIGRSGRAGEAGLALSLISHDEYQH 377

Query: 357 IDAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
              IEK  + +++     G  +    P +         +R   P+ + +    + +    
Sbjct: 378 FKVIEKKNKLRLEREQYPGFEADAEAPEDC-------PSRIEKPMAKPAGTGKKHRNKLP 430

Query: 415 SQKSHIPLKE 424
              + +  K+
Sbjct: 431 KANADLWAKK 440


>gi|153824721|ref|ZP_01977388.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-2]
 gi|149741677|gb|EDM55706.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-2]
          Length = 406

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 132/417 (31%), Positives = 207/417 (49%), Gaps = 19/417 (4%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS  ++ A+  A   +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 1   MSFSSLALSADLIQALPKA-ITEPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+    +    + L+L PTRELA QV+D     G    L    L GG+    Q   L 
Sbjct: 60  ERLKTSPEQ----QALVLVPTRELAMQVSDVLTHVGTPLGLNTLCLCGGVDKAEQQNALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
              ++L+ T GR+ D    G  L     + V+DEADR+LDMGF P +Q + S     RQT
Sbjct: 116 ENPNILVATTGRLFDLTQSGLSLNRVTTL-VLDEADRLLDMGFWPQVQALASQTASVRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           ++ SAT +D+L+  ++  ++ P ++  N  +S  + ++            +  +      
Sbjct: 175 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 234

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F   K+N  +L   L K G    A+HG+  Q  R   L+ FK GT Q+++
Sbjct: 235 QWP---QVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQTQREAALAEFKNGTTQVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG+ G A +LV   ++  ++AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAI 351

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417
             L ++ +   N         LE   +       ++   P+     +RR +N  S K
Sbjct: 352 RTLTQRDLPVQN---------LEGFPVTDQPSTGESKRAPRDKQA-NRRTQNKKSVK 398


>gi|308160174|gb|EFO62674.1| ATP-dependent RNA helicase HAS1, putative [Giardia lamblia P15]
          Length = 547

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 124/471 (26%), Positives = 213/471 (45%), Gaps = 31/471 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F++  LSP ++ AV   G+   T IQ  +IP++L   ++   A TG+GK+ +F+LP + +
Sbjct: 31  FSETSLSPFLLEAVDAMGHKNMTRIQEASIPVILSGRNMTAKAHTGSGKSLAFLLPAIDL 90

Query: 63  LEKGRARVRMPRTLIL-EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           + K   ++     +I+  PTRELA Q+ +   +     N+TV L IGG   + +   L +
Sbjct: 91  IHKANMKLHHGTGVIVLTPTRELALQLYNVATQLISATNITVGLAIGGTSRQKEANHLCK 150

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEIL-VIDEADRMLDMGFIPYIQNITSLVPFT--R 178
           GA V+I TPGR+ DH N       +   + ++DEAD +L+ GF   ++ I  ++P    R
Sbjct: 151 GASVVIATPGRLCDHLNNTPGFKTDKLFMLILDEADMLLEYGFQQELEAILRMLPGPKLR 210

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q   FSATM+D+  +V    +     + +NT   ++      F   Y     +   L   
Sbjct: 211 QVCFFSATMSDKCLEVPHMEVDKETLVRINTDVKSSAATRAHFEQGYIICPPEQRFLLLY 270

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              +      II     ++ V   +   +       +  +   + + ++ +  K    Q 
Sbjct: 271 TFMKRRSDKKIIVFLSSRDSVEFYYEFLRFIGMASILMLDGGMKQKQRMETYNKFCNAQS 330

Query: 299 MV--ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--GRHGKAFTLVAKEDI 354
            V  A+++AARGLD+P + +V  FD P   E+YIHR GR  R    + G     +   + 
Sbjct: 331 GVLLATNVAARGLDLPAIDYVIQFDPPESVESYIHRAGRACRGDTNKKGVGLLFLMSHET 390

Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414
           K I  ++          N  L     P +KI    +  A   N I   +T +  R+K  +
Sbjct: 391 KFISFLKAH--------NVSLFEFEFPADKI---INVQAEMENLI---ATIYYLRRKAQN 436

Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGF--------RGNMPAFMLPKN 457
           + +S I    S  + K+  ++ + D + LG         R ++P   L KN
Sbjct: 437 AYRSFISAYASHHLKKV-FNVNKIDLECLGRSFGLTEVPRVDVPGISLYKN 486


>gi|228993029|ref|ZP_04152952.1| ATP-dependent RNA helicase yqfR [Bacillus pseudomycoides DSM 12442]
 gi|228999079|ref|ZP_04158661.1| ATP-dependent RNA helicase yqfR [Bacillus mycoides Rock3-17]
 gi|228760696|gb|EEM09660.1| ATP-dependent RNA helicase yqfR [Bacillus mycoides Rock3-17]
 gi|228766677|gb|EEM15317.1| ATP-dependent RNA helicase yqfR [Bacillus pseudomycoides DSM 12442]
          Length = 436

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 198/365 (54%), Gaps = 10/365 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F      P ++ AV +  + +PT IQ K  P+V +   V G +QTG+GKT +++LP L 
Sbjct: 5   TFTQYNFQPFLIDAVRELRFSEPTEIQKKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLN 64

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNF----EKYGKNYNLTVALLIGGIPFEAQNK 117
            ++  R  V++    I  PTRELA Q+        +   ++  +T   LIGG   +   +
Sbjct: 65  RIDAKREEVQLV---ITAPTRELAQQIYQEIVKLTKFCEEDQMITARCLIGGTDKQRSIE 121

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           KL++   V+I TPGRI D      L ++    +++DEAD MLDMGFI  +  I + +P  
Sbjct: 122 KLKKQPHVVIGTPGRIKDLVEEKALFVHKATTIIVDEADLMLDMGFIQDVDKIAARMPKN 181

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q L+FSAT+  +L+   + +++NP+ I +N     A  IEH  V +     +    L +
Sbjct: 182 LQMLVFSATIPQKLKPFMKKYMENPEHIHINPKQVAAGNIEHYLVPSRH---RNKIELVK 238

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            +  Q      I+F N KK    +   L ++G  V  IHG++  R R K++   ++   Q
Sbjct: 239 NMLLQFKPYLAIVFTNTKKKADEVADGLAERGLKVGRIHGDLSPRDRKKMMKQVRDLEFQ 298

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            +VA+DLAARG+DI  + HV N+++P+  + ++HR+GRT RAG  G A T+    + + +
Sbjct: 299 YIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGYSGIAVTIYDPANEEAL 358

Query: 358 DAIEK 362
           D++EK
Sbjct: 359 DSLEK 363


>gi|254480020|ref|ZP_05093268.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214039582|gb|EEB80241.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 440

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 113/428 (26%), Positives = 192/428 (44%), Gaps = 13/428 (3%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTI 62
             L L   +   +    Y K T +Q + IP  L+  D+   A+TG+GKT +++LP +  I
Sbjct: 3   QQLELDRGLRLGLDALEYEKATEVQEQVIPAALEGTDLRVSAETGSGKTVAYLLPTLQRI 62

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L     R      ++L PTRELA QV  N     +   L    + GG  F+ Q   L + 
Sbjct: 63  LSAPINRKAGALAVVLVPTRELARQVQKNCRDLMQKTQLGAQAITGGADFKYQRALLRKN 122

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            +++I TPGR+L+H  +G   + +++ L++DEADRMLDMGF   +  + S     RQ ++
Sbjct: 123 PELIIATPGRLLEHCEKGSADLGSLQTLILDEADRMLDMGFRDDVMKLASFCGAERQVIM 182

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
            SAT+                   +                  A   +    L   L  +
Sbjct: 183 LSATL-KHKGLGGVAKDLLRDPQTIEVSEFRQPHSSIHHQRILADSQEHKDKLLCALMDK 241

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 ++F N++     L   L   G     +HG +    R  +++ F++  + ++ AS
Sbjct: 242 GGFTRALVFANKRTTAQRLAGLLSHHGLRCGCLHGEMSTEERKHVMTQFRDSKVDMVCAS 301

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           D+AARGLD+ D+  V N+D+P + ++Y+HR GRTGRAG  G A +LV+  +   + +I++
Sbjct: 302 DVAARGLDVKDIDLVVNYDLPQKGDDYLHRTGRTGRAGATGLAISLVSGLEWNLMVSIQR 361

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPL 422
            +   +++    L  L                K      KS G  +++   ++ KS    
Sbjct: 362 YLN--LEFEKRSLPGLK---------ARYSGPKKTKGSGKSAGTKKKRSKSTADKSKTRA 410

Query: 423 KESEKISK 430
           +  +   K
Sbjct: 411 RNQKSKGK 418


>gi|167586824|ref|ZP_02379212.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
          Length = 396

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 137/364 (37%), Positives = 205/364 (56%), Gaps = 26/364 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LGLSP++V A+  AGYVKPTP+Q + IP  +   D+   + TG+GKTA+F+LP + 
Sbjct: 35  TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 94

Query: 62  ILE-----------------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98
                                     +    V  P  L+L PTRELA QV      YGK+
Sbjct: 95  RFAQLQKAQAQQPRAPREPSNGDRRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 154

Query: 99  YNL-TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157
                   ++GG+ +  Q   L +  ++L+ TPGR+LDH  RG++ ++ +++LV+DEADR
Sbjct: 155 LRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 214

Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217
           MLDMGFI  I+ I    P +RQT+LFSAT+  ++  ++   L++P+RIE+     +   I
Sbjct: 215 MLDMGFIEDIETIVDATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANI 274

Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277
                    +  K    L   L   + +   IIF   K +   L   L   GF   A+HG
Sbjct: 275 AQTVHYVDDRDHKDR--LLDHLLRDNALDQAIIFTATKIDADQLAGRLADAGFESAALHG 332

Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337
           ++ Q +R + +   +E  ++++VA+D+AARG+DIP + HVFN+D+P  AE+Y+HRIGRTG
Sbjct: 333 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 392

Query: 338 RAGR 341
           RAGR
Sbjct: 393 RAGR 396


>gi|327392908|dbj|BAK10330.1| ATP-independent RNA helicase DbpA [Pantoea ananatis AJ13355]
          Length = 439

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 126/387 (32%), Positives = 204/387 (52%), Gaps = 14/387 (3%)

Query: 19  AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78
            GY   TP+Q  T+P +L   DV   A+TG+GKTA+F + +L  ++    + +    LIL
Sbjct: 1   MGYTSMTPVQAATLPAILDGRDVRAQAKTGSGKTAAFGIGLLQHIDSAHFQTQA---LIL 57

Query: 79  EPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKLERGADVLICTPGRILDHF 137
            PTRELA QV++   +  +       L + G  P  AQ   L     +++ TPGRILDH 
Sbjct: 58  CPTRELADQVSNVLRQLARFTRNIKILTLCGGQPMSAQRDSLVHAPHIVVGTPGRILDHI 117

Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197
            R  L + ++  LV+DEADRML+MGF   ++ I +  P +RQTLLFSAT  + +  +S+ 
Sbjct: 118 KRETLKLESLRTLVLDEADRMLEMGFRDDMETIIAATPASRQTLLFSATWPEGIAALSQR 177

Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257
           F    +R  ++  +     +             +   L   L S+    + ++FCN K+ 
Sbjct: 178 F----QREALSVVTEEVSELPAIEQQFIEASHGEKLSLLISLLSERQPSSCVVFCNTKRE 233

Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317
             ++  +L  +  S   +HG+++QR R ++L  F  G+ +++VA+D+AARGLDI  +  V
Sbjct: 234 CDDIAAALNARDISALPLHGDLEQRDRERVLIRFANGSGRVLVATDVAARGLDIKLLSLV 293

Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377
            N+ +    E ++HRIGRT RAG  G A + VA +++    A+E  +++K+ W+    SS
Sbjct: 294 VNYQLAWDPEVHLHRIGRTARAGEQGAAVSFVAADEMARAHALEDFLQQKLPWVAA--SS 351

Query: 378 LNPPLEKIDIAQH----NHARKNNPIP 400
           L    + +  A      +  RK    P
Sbjct: 352 LKKSSKALPAAMMTLCIDGGRKAKIRP 378


>gi|163788491|ref|ZP_02182937.1| inducible ATP-independent RNA helicase [Flavobacteriales bacterium
           ALC-1]
 gi|159876811|gb|EDP70869.1| inducible ATP-independent RNA helicase [Flavobacteriales bacterium
           ALC-1]
          Length = 372

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 113/375 (30%), Positives = 198/375 (52%), Gaps = 8/375 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60
            F++LG+    +  + +     PT IQ   IP++L+   D+ G+AQTGTGKTA+F LP+L
Sbjct: 3   TFSELGIHKSYIKGLKELNIKNPTEIQETVIPILLESNTDLIGLAQTGTGKTAAFGLPVL 62

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG--IPFEAQNKK 118
             ++K ++ V+    LI+ PTREL  Q+     ++ K  +  +           + Q K 
Sbjct: 63  HAIDKNKSEVQA---LIIAPTRELVQQIQKQLFRFTKYIDGKIFAEGVYGGEKMDRQIKA 119

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L R   +++ TPGR+LD   RG + ++N++ILV+DEAD ML MGF   +  I       R
Sbjct: 120 LTRATHIVVATPGRLLDLVERGAVDISNVKILVLDEADEMLSMGFKEDLNKILKYNTKKR 179

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
            T LFSATM D+++ + +N++           ++                 K   +++  
Sbjct: 180 NTWLFSATMPDDIKSIIKNYMSPDAVRVEVNKNALVNENISHHYIQTNIKDKLNMVIR-- 237

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
           +  +   + GIIFC  K     L   L+ +GF+V A+ G++ Q+ R K++  FK  ++Q+
Sbjct: 238 ILEKRQDERGIIFCRTKAGTKTLAQQLQHEGFAVGALEGDMQQKERDKVMRAFKNESLQI 297

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +V++D++ARG+D+ D+  V +  +P   + Y HR GRT RAG+ G++  L+   +++ + 
Sbjct: 298 LVSTDVSARGIDVRDLSFVLHHQLPEHLDYYTHRSGRTARAGKTGQSIALIIPGEMQKVI 357

Query: 359 AIEKLIEKKVDWLNG 373
            I+  +      +  
Sbjct: 358 DIQSALGITFREITM 372


>gi|322500470|emb|CBZ35547.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 897

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 103/364 (28%), Positives = 175/364 (48%), Gaps = 6/364 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L +S +    +    Y   TPIQ  T+ L L   DV G A+TG+GKT  FV+P+L 
Sbjct: 70  KFTELPISQRTQMGLERGHYTILTPIQKGTLHLALAGLDVLGAAKTGSGKTLCFVIPVLE 129

Query: 62  ILEKGRARVRMPRTL-ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            L +      M     +L PTRELA Q+    +  G  + L+ ALL GG   + + K+L 
Sbjct: 130 RLYREHWSSDMGVGALLLSPTRELALQIFKVMQLVGYKHVLSAALLTGGRDVQEERKRLH 189

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             + ++      +    +  +L+++N+++  +DEADR+LDMGF   I +I + +P  RQ+
Sbjct: 190 AISIIVGTPGRVLHHLQDDAELVLDNMQLFCMDEADRLLDMGFREAITSILAYLPPQRQS 249

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           LLFSAT T ++Q +++  L+NP+ +     ++    +  C      +  KK      +  
Sbjct: 250 LLFSATQTTDVQMLAQMSLKNPRYVSTQAITAAPTPMTLCQNFVVVELHKKL-DALLMFL 308

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSL----EKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
            +      ++F +    V  +  +     +K       +   + Q  R ++   F     
Sbjct: 309 KRHPNDKIVVFVSTCNQVKFMHRAFSKILKKMRIPSMCLTSKMKQFRREEVFLTFCRCKS 368

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++  +D+A+RGLD P V  V  +D P  A+ YIHR GRT RAG  G +   +   +   
Sbjct: 369 AVLFCTDVASRGLDFPLVHWVVQYDCPESAQTYIHRAGRTARAGARGVSLLFLTPRETPM 428

Query: 357 IDAI 360
           +  +
Sbjct: 429 LSYL 432


>gi|320162590|gb|EFW39489.1| nuclear RNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 433

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 147/376 (39%), Gaps = 8/376 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F DL L P+++ A+ + G+  P+ +Q   IP      D+   A++G GKTA FVL  L  
Sbjct: 49  FRDLMLKPELLRAITECGFEHPSEVQHACIPQANLGSDIICQAKSGMGKTAVFVLSTLQQ 108

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L      V +                 D F K+       V      I  +         
Sbjct: 109 LVPTEGEVSVLVLCHTRELAFQIKNEFDRFIKFMPTIKTDVFYGGTPIKQDETKLAAGTP 168

Query: 123 ADVLICTPGR-----ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
             V+                     L +    ++ +    +  +     +Q I    P  
Sbjct: 169 NVVVGTPGRILALSTPDASGKARLNLSHVKHFVLDECDRMLDQVDMRKDVQKIFIQTPHK 228

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           +Q ++FSAT+   L+   + F+ +P  I V+  +         +     +  K       
Sbjct: 229 KQVMMFSATLDKALRPTCKKFMHDPMEIYVDDETKLTLHGLQQYYFKLTEQDK--NKKLN 286

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
            L         +IF         L   L +  F   AIH  + Q  R++   NFK    +
Sbjct: 287 ALLDALEFNQVVIFVKSVNRAKELTKLLVECNFPAIAIHSAMPQDERIQRYQNFKNFQSR 346

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKH 356
           ++VA+DL  RG+DI  V  V N+D+P+ +++Y+HR+ R GR G  G A T V ++ED   
Sbjct: 347 ILVATDLFGRGIDIERVNIVINYDMPDSSDSYLHRVARAGRFGTKGLAVTFVSSEEDATI 406

Query: 357 IDAIEKLIEKKVDWLN 372
           +  ++   E ++D L 
Sbjct: 407 LSQVQSRFEVQIDALP 422


>gi|307331142|ref|ZP_07610269.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306883222|gb|EFN14281.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 507

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 131/428 (30%), Positives = 209/428 (48%), Gaps = 10/428 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+L +   ++ A+   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L 
Sbjct: 70  TFAELAMPSALLAALSAEGMSAPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLA 129

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                RA  R P  L+L PTRELA QV D    Y +   L +A ++GG+    Q+  L  
Sbjct: 130 RTAGQRAEPRQPLALVLVPTRELAQQVTDALTPYARPLKLRLATVVGGMSIGRQSSALRG 189

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G +V++ TPGR+ D   RG   +N ++I V+DEAD+M DMGF+P +  +   V    Q +
Sbjct: 190 GVEVVVATPGRLKDLIGRGDCRLNRVDITVLDEADQMADMGFMPQVTALLDQVRPEGQRM 249

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   +  +   +L +P    V+  +    T+EH  +  +              + 
Sbjct: 250 LFSATLDRNVDLLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVHGADK-----HATTTEI 304

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F + K  V NL   L   G    A+HG   Q  R + L+ FK G + ++VA
Sbjct: 305 AAREGRSIMFLDTKHAVDNLTKHLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVA 364

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +++AARG+ + ++  V N D P+  ++Y+HR GRT RAG  G   TLV     + ++ + 
Sbjct: 365 TNVAARGIHVDNLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTLVLPNQRRTMNRL- 423

Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421
            + +  +   +  + S    L +I  AQ   A    P+   +   +R K++ SS +    
Sbjct: 424 -MADAGITPQSTQVRSGEAELSRITGAQ---APSGVPVTIAAPVVERPKRSGSSTRGRRS 479

Query: 422 LKESEKIS 429
                + +
Sbjct: 480 RPAQARRA 487


>gi|319761928|ref|YP_004125865.1| dead/deah box helicase domain protein [Alicycliphilus denitrificans
           BC]
 gi|317116489|gb|ADU98977.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           BC]
          Length = 584

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 193/413 (46%), Gaps = 48/413 (11%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-----QRH--DVCGIAQTGTGKTASF 55
           F  LGL+P++V AV D GY +PT +Q K IPL +          D+   +QTG+GKTA+F
Sbjct: 33  FVRLGLAPELVQAVADLGYTQPTAVQEKAIPLAMGAADVAGRFIDLMVSSQTGSGKTAAF 92

Query: 56  VLPMLT---------------------------------------ILEKGRARVRMPRTL 76
           +LP+L                                               +   P  L
Sbjct: 93  LLPVLHTLIQQQADADAAARAEFERAAAEAAARGEAAPKRPKRKNPTHPRNFKAAAPGAL 152

Query: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136
           +L PTRELA QVA +  +  K+        + G           + A++++ TPGR+LD 
Sbjct: 153 VLCPTRELAQQVAHDAIELVKHCKGLRIANVVGGMPYQLQIARLQNANLVVATPGRLLDL 212

Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196
               ++ ++ ++ LV+DEADRMLD+GF   +  I  L    +QT++FSAT    +Q+++ 
Sbjct: 213 QRSMQIKLDQVQFLVVDEADRMLDLGFSDDLAEINQLTSERKQTMMFSATFAPRIQQLAM 272

Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--QLLQSQDTMKNGIIFCNQ 254
             +             T +                    +         ++   I+F + 
Sbjct: 273 RVMHEGGASVKKVQIDTPQEKHANIKQMLYWADNAQHKRKLLDHWLRDASIGQAIVFAST 332

Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
           +     L + L++ GFS  A+HG + Q  R + L   + G +Q++VA+D+AARG+D+P +
Sbjct: 333 QVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPSI 392

Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367
            HVFNF +P +AE+Y HRIGRTGRAGR G A T     D + I  IE    ++
Sbjct: 393 THVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIEGYSRQQ 445


>gi|119497849|ref|XP_001265682.1| ATP dependent RNA helicase (Dbp5), putative [Neosartorya fischeri
           NRRL 181]
 gi|134034075|sp|A1CYG5|DBP5_NEOFI RecName: Full=ATP-dependent RNA helicase dbp5
 gi|119413846|gb|EAW23785.1| ATP dependent RNA helicase (Dbp5), putative [Neosartorya fischeri
           NRRL 181]
          Length = 489

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 96/399 (24%), Positives = 183/399 (45%), Gaps = 19/399 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVL-P 58
           +F DLGL P+++  + +  + KP+ IQ + +PL+L     ++ G +Q+GTGKTA+FVL  
Sbjct: 78  NFEDLGLDPRILKGLSNMNFRKPSKIQERALPLLLNNPPKNLVGQSQSGTGKTAAFVLNA 137

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  +        + P+ LIL PTRELA Q+    +  G+  +  +              K
Sbjct: 138 LSRVDLSTEQMQKTPQALILAPTRELARQILGVVQVMGQFVDGLIIGAAVPTDR-DSRPK 196

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
               + V+            R  +      +++ +  + +   G       + +L+P   
Sbjct: 197 RLECSIVVGTPGTVGDMIKRRTFIPNKLKVLVLDEADNMLDQQGLGDQCIRVKALLPRDI 256

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT  + + + +  F  N   I +     T E I+  ++       K   L+Q  
Sbjct: 257 QVVLFSATFPEHVHQYASKFAPNANEITLQHEELTVEGIKQLYLDCADGEDKYKTLVQL- 315

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                T+ + IIF   +     +   +  +G +V ++ G  D   R  I+  F+ G  ++
Sbjct: 316 -YGLLTVGSSIIFVQTRAAAQEIEKRMTAEGHTVVSLTGERDPSVRDAIIDQFRRGEAKV 374

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPN-----------RAENYIHRIGRTGRAGRHGKAFT 347
           ++A+++ ARG+D+  V  V N+D+P              + Y+HRIGRTGR GR G + +
Sbjct: 375 LIATNVLARGIDVSTVSMVINYDIPELHQPSVPGRQADFQTYLHRIGRTGRFGRVGVSIS 434

Query: 348 LVA-KEDIKHIDAIEKLIEKKVDWLN-GDLSSLNPPLEK 384
            V+ +E+ + ++ I+     ++  ++  D   +   ++K
Sbjct: 435 FVSNREEWEMLNQIQTYFNCEIQRVDTKDWDEVEDIIKK 473


>gi|255726050|ref|XP_002547951.1| ATP-dependent RNA helicase ded1 [Candida tropicalis MYA-3404]
 gi|240133875|gb|EER33430.1| ATP-dependent RNA helicase ded1 [Candida tropicalis MYA-3404]
          Length = 665

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 133/393 (33%), Positives = 206/393 (52%), Gaps = 19/393 (4%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F    L   +V  +  + + KPTP+Q  ++P+V    D+   AQTG+GKT  F+ P+L+ 
Sbjct: 188 FTAPPLDELLVENITLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSE 247

Query: 63  LEKGRA------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110
                                 P  L++ PTREL +Q+ +  +K+     +   ++ GG 
Sbjct: 248 SYLNGPAPVPETTGAFSSHKVYPTILVMAPTRELVSQIYEESKKFSYRSWVRPCVVYGGA 307

Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
               Q + L+RG D+L+ TPGR+ D   RGK+ + NI+ LV+DEADRMLDMGF P I++I
Sbjct: 308 DIGQQMRNLDRGCDLLVATPGRLKDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHI 367

Query: 171 TSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
                      RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I    +    
Sbjct: 368 VEECDMPEVTDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKILYVED 427

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
           +  K   L              I+F   K+    L   L  QGF   AIHG+  Q  R K
Sbjct: 428 EDKKSVILDLLAANENG---LTIVFTETKRMADQLADFLYDQGFPATAIHGDRSQYEREK 484

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L+ FK G   ++VA+ +AARGLDIP+VGHV NFD+P+  ++Y+HRIGRTGRAG  G A 
Sbjct: 485 ALAAFKNGAAPILVATAVAARGLDIPNVGHVINFDLPSDIDDYVHRIGRTGRAGNVGIAT 544

Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
           +   + +   +  + +++ +    +   L+ ++
Sbjct: 545 SFFNRGNKNVVKGLIEILSEANQPIPDFLTKVS 577


>gi|118616249|ref|YP_904581.1| ATP-dependent RNA helicase, RhlE1 [Mycobacterium ulcerans Agy99]
 gi|118568359|gb|ABL03110.1| ATP-dependent RNA helicase, RhlE1 [Mycobacterium ulcerans Agy99]
          Length = 524

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 131/424 (30%), Positives = 206/424 (48%), Gaps = 10/424 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADLG+   ++  +   G   P PIQI+T+P  L   DV G  +TG+GKT +F LPM++
Sbjct: 77  TFADLGVGESLIEVLAARGISHPFPIQIETLPDTLGGRDVLGRGKTGSGKTLAFSLPMVS 136

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L     R   P  L+L PTRELA+Q+    +       L V  + GG+P   Q   L  
Sbjct: 137 RLAGRPRRPARPTGLVLAPTRELASQITATLQPLAAVNGLRVTTIFGGVPQGRQVTALNS 196

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G D+++   GR+ D   +  + +++IEI VIDEAD M D+GF+P +  I +  P   Q L
Sbjct: 197 GVDIVVACSGRLEDLMKQRLISLDSIEITVIDEADHMADLGFLPGVTRILAATPSGGQRL 256

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+ + + K+   FL +     V++  S    +           +KK  + +    +
Sbjct: 257 LFSATLDNGVDKLVNRFLHDAVLHSVDSSDSPVPQMVRHVFHVSGAAAKKDLVHRLASGT 316

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K     L   L + G     +HGN+ Q +R + L+ F +G  +++VA
Sbjct: 317 ----GRRILFMRTKHQARKLAKQLTESGVPAVDLHGNLSQPARDRNLAAFSKGEARVLVA 372

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ +  +  V + D P   + Y+HR GRT RAG  G   T+V  E  K   A+ 
Sbjct: 373 TDIAARGVHVDGIELVVHIDPPAEHKAYLHRSGRTARAGNAGDVVTVVLPEQRKDTHALM 432

Query: 362 KLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419
           +    +V    +  D ++++  +  I   Q   A K    P+K+      KK  + +K  
Sbjct: 433 RRAGIRVTPQEVTADSAAVHELVGDIAPYQ-APAPKQVAAPKKAGA---PKKGAAPKKGA 488

Query: 420 IPLK 423
            P  
Sbjct: 489 APRN 492


>gi|294944705|ref|XP_002784389.1| ATP-dependent RNA helicase DRS1, putative [Perkinsus marinus ATCC
           50983]
 gi|239897423|gb|EER16185.1| ATP-dependent RNA helicase DRS1, putative [Perkinsus marinus ATCC
           50983]
          Length = 720

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 123/523 (23%), Positives = 212/523 (40%), Gaps = 66/523 (12%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           +A L LS  V+  +   G+ +PTP+Q   IP+ L+  D+  +A+TG+GKT  F+LP++  
Sbjct: 135 WASLQLSRPVLRGLNALGFAEPTPVQRDVIPVALRSQDILAMAETGSGKTGGFLLPIVER 194

Query: 63  LEKGRA---RVRMPRTL------------ILEPTRELAAQVADNFEKYGKNYNLTVALLI 107
           L +      R + P T             +L PTRELA Q       + K   LT  L++
Sbjct: 195 LCQASHVRSRRKDPHTGRITGGRAATKALVLLPTRELAVQCYKMLRDFTKFAPLTSCLVV 254

Query: 108 GGIPFEAQNKKLERGADVLICTP-GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166
           GG   + Q  ++    DV++ TP   +    N   + +   EI+V+DE DR+L+MGF   
Sbjct: 255 GGFDAQKQASEMRAQPDVVLATPGRVLDLLLNSPNIHLEMCEIVVLDECDRLLEMGFRDE 314

Query: 167 IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
              I        +  +  +   ++        + +       T ++              
Sbjct: 315 CLTIIQKHCNRSRQTMMFSATMNQEVLKLAKVVLSKPVTIETTKANRVSPTLTQEFIRVT 374

Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286
              ++ A L        T +  I    +K                   +HGN+ Q+ R+K
Sbjct: 375 SEQQREATLLAACTKHFTKRCLIFCAQKKTAHRMAVLLGLVGKVKFAELHGNLSQQQRVK 434

Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
            L++F+ G    ++ +DLAARGLD+P V  V NF++P     Y+HR+GRT RAG  G + 
Sbjct: 435 ALADFESGKATHLICTDLAARGLDLPHVETVINFELPPDVTKYVHRVGRTARAGASGTSV 494

Query: 347 TLVAKEDIKHIDAIE------------------KLIEKKVD---------WLNGDLSSLN 379
           T+    + K +  I                   K++E+ VD          +      + 
Sbjct: 495 TMYTPGEYKQVKHIAKKCTADVKRKKSSDPNQPKVLERTVDSEDVKDMAVKITESEDKVK 554

Query: 380 PPLEKIDIAQHNH-----ARKNNPIPQKSTGFDRRKKNYSSQK----------SHIPLKE 424
             +++  + +        A+K + +       DRR +    +K          S +P   
Sbjct: 555 QIMQEESVERELRLADVMAKKVDNMKTHRKEIDRRPRQQWIRKGAGAEAIDSASKVPKTR 614

Query: 425 SEKISKLQQDIQENDADS--------LGFRGNMPAFMLPKNRG 459
           SEK +  + ++Q+   D          G +  +   M  K+RG
Sbjct: 615 SEKRAARKLEVQQAKKDQERAERRHEEGMQRGLAKRMRKKDRG 657


>gi|126274019|ref|XP_001387376.1| Eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Scheffersomyces
           stipitis CBS 6054]
 gi|146324945|sp|A3GFI4|IF4A_PICST RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|126213246|gb|EAZ63353.1| Eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Pichia stipitis
           CBS 6054]
          Length = 397

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 200/377 (53%), Gaps = 5/377 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F DL L P +V  +   GY  P+ IQ + I  + +  DV   AQ+GTGKTA+F +  L 
Sbjct: 24  KFDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQ 83

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            +++     +    LIL PTRELA Q+ +     G   N+TV   IGG   +   +    
Sbjct: 84  RIDENEKSTQA---LILAPTRELALQIKNVITSIGLYLNVTVHASIGGTSMQDDIEAFRS 140

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G  V++ TPGR+ D   R       +++ ++DEAD ML  GF   I NI  L+P T Q +
Sbjct: 141 GVQVVVGTPGRVFDMIERRYFKTEKVKMFIMDEADEMLSSGFKEQIYNIFRLLPETTQVV 200

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V+  F+ NP RI V     T E I+  ++    +  K   L       
Sbjct: 201 LLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVELEDYKFDCLCDL--YD 258

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             ++   +IFCN +  V  L   L+ + F+V AIH ++ Q  R  I+  F+ G+ ++++A
Sbjct: 259 SISVTQAVIFCNTRSKVEFLTTKLKAENFTVSAIHADLPQAERDTIMKEFRSGSSRILIA 318

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P+  ENYIHRIGR GR GR G A   V + D+  +  IE
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGVAINFVTERDVGMMREIE 378

Query: 362 KLIEKKVDWLNGDLSSL 378
           +    +++ +  D+ +L
Sbjct: 379 QFYSTQIEEMPADIGAL 395


>gi|260770091|ref|ZP_05879024.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
 gi|260615429|gb|EEX40615.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
          Length = 412

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 134/424 (31%), Positives = 214/424 (50%), Gaps = 12/424 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           M F+ L LS +++ A+      +PT IQ   IP +L   DV  +A TG+GKT ++ LP+L
Sbjct: 1   MPFSTLSLSSELIHALPK-DVKQPTDIQALAIPELLAGKDVLALANTGSGKTLAYALPLL 59

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L     +  +    +L PTRELA QV++   + G+   L    L GG+    Q + L 
Sbjct: 60  DKLHANPQQKAL----VLVPTRELAIQVSEAINQVGQALELNAVCLCGGVDKAQQQQALA 115

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +L+ T GR++D  N G  L +    L++DEADR+LDMGF P +QNI       RQT
Sbjct: 116 TNPHILVATTGRLVDLVNHGLDLSHI-HTLILDEADRLLDMGFWPDVQNIAMQTANQRQT 174

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT ++ L++ ++  +  PK++  +  +ST + I             K  +      
Sbjct: 175 AMFSATFSEALKEKAKQLMHAPKQVAAHQENSTNQDITETLFLVNKGSKTKALIEL---I 231

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
            Q+     ++F   K+N   L   L K G S  A+HGN  Q  R + L+ FK G + +++
Sbjct: 232 QQNAWTRVLVFIGAKENADGLAKKLNKAGVSTTALHGNKSQDEREEALAQFKSGQVNVLI 291

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+DL ARG+ I  +  V NF++P  AE Y+HR+GRT RAG  G A +LV   ++  ++AI
Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVAMSLVCHGEMDALNAI 351

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
             L ++ +     DL+   P  +K    +   A ++    +++      K+     K   
Sbjct: 352 RHLTQRALPV--QDLAGF-PVTDKPSTGESKRAPRDKKANRRTNNKSSIKQFQGKVKRQT 408

Query: 421 PLKE 424
           P  +
Sbjct: 409 PKSK 412


>gi|148727325|ref|NP_001092045.1| eukaryotic initiation factor 4A-I [Pan troglodytes]
 gi|158514251|sp|A5A6N4|IF4A1_PANTR RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|146741502|dbj|BAF62407.1| eukaryotic translation initiation factor 4A, isoform 1 [Pan
           troglodytes verus]
          Length = 406

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 123/378 (32%), Positives = 200/378 (52%), Gaps = 6/378 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L 
Sbjct: 33  SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 92

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LE 120
            +E     ++  + L+L PTRELA Q+       G     +    IGG    A+ +K   
Sbjct: 93  QIEL---DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 149

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q 
Sbjct: 150 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 209

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L      
Sbjct: 210 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL--Y 267

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
              T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++
Sbjct: 268 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 327

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
            +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G    +V +ED + +  I
Sbjct: 328 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVTINMVTEEDKRTLRDI 387

Query: 361 EKLIEKKVDWLNGDLSSL 378
           E      ++ +  +++ L
Sbjct: 388 ETFYNTSIEEMPLNVADL 405


>gi|10039341|dbj|BAB13313.1| Vasa-related protein PlVAS1 [Dugesia dorotocephala]
          Length = 573

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 107/426 (25%), Positives = 176/426 (41%), Gaps = 31/426 (7%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F +L L   ++  + D  YVK TP+Q   +P++ +  D+   AQTG+GKTA+F++P++ 
Sbjct: 114 SFGELELPEFLMENIRDMKYVKLTPVQKYAVPIIDRGRDLMACAQTGSGKTAAFLIPIIK 173

Query: 62  ILE--------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI--GGIP 111
            L            +    PR LI+ PTREL  Q+        +  N+  A +     + 
Sbjct: 174 GLHGTVLETDSSNTSSTAFPRALIMTPTRELCRQIFTAARLLCRGSNIRCAYMYGGIEMN 233

Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171
              +N +      ++      I         L      ++ +    + + GF   +  I 
Sbjct: 234 KSRRNIQATGCDILVATPGRLIHFLELVWVSLRYIKYFVLDEADRMLDEEGFYEVVNKIY 293

Query: 172 SLVPF------TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225
                      +    +FSAT  +E+Q ++   L N   + V                  
Sbjct: 294 KEAHQSGDADRSIHLSMFSATFPNEIQTLASRLLSNYLFLAVGV---VGSANCDVKQEII 350

Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285
               +        L      +  +IF   K+        L   GF    IHG+ +Q  R 
Sbjct: 351 RAEQRDKVTSAIELIKTIPDEKTLIFVESKRMADFFGIKLGYLGFKATTIHGDREQEQRE 410

Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345
             L++FK G I  MVA+++AARGLDIP V +V N D+P+  + Y+HRIGRTGR G  G+A
Sbjct: 411 SALNDFKSGRINFMVATNVAARGLDIPKVDNVINIDMPDTIDTYVHRIGRTGRCGNVGRA 470

Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK--IDIAQHNHARKNNPIPQKS 403
            +    +D K +     L+ K        L   N P+E+   ++A  +     NP    +
Sbjct: 471 ISFF--DDQKDLGLAGALVGK--------LQEANQPVEQWLRELAAGSVGAICNPRYSSN 520

Query: 404 TGFDRR 409
           +   R+
Sbjct: 521 SRDTRK 526


>gi|329940598|ref|ZP_08289879.1| DEAD-box RNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329300659|gb|EGG44556.1| DEAD-box RNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 497

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 135/430 (31%), Positives = 212/430 (49%), Gaps = 10/430 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +  +++  +   G   P PIQ  T+P  L   DV G  +TG+GKT +F L +L  
Sbjct: 71  FADLDMPEQLLAELGRQGVTAPFPIQGATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 130

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               RA  R P  LIL PTRELA QV D    Y ++  L +A ++GG+P   Q   L  G
Sbjct: 131 TAGQRAEPRQPLGLILVPTRELAQQVTDALTPYARSVRLRLATVVGGMPIGRQAGALRGG 190

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+VL+ TPGR+ D  +RG+  +N+++I V+DEAD+M  MGF+P +  +   V    Q +L
Sbjct: 191 AEVLVATPGRLKDLIDRGECRLNHVDITVLDEADQMAGMGFMPQVTALLDQVRPEGQRML 250

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   +  +   +L +P    V+  +    T+EH  +  +              Q  
Sbjct: 251 FSATLDRNVDLLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVHGADK-----HAATTQIA 305

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F + K  V  L   L   G    A+HG   Q  R + L+ FK G + ++VA+
Sbjct: 306 ARDGRVIMFLDTKHAVDRLTQDLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVAT 365

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
           ++AARG+ + ++  V N D P   ++Y+HR GRT RAG  G   TLV     + +  +  
Sbjct: 366 NVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRGMVRV-- 423

Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPL 422
           + +  +      + S +  L +I  AQ   A    P+   +   +R K++ +S+    P 
Sbjct: 424 MSDAGIRPQTTQIRSGDVALSRITGAQ---APSGIPVVITAPVVERPKRSATSRGRRRPA 480

Query: 423 KESEKISKLQ 432
             + +    Q
Sbjct: 481 SATRRTPVRQ 490


>gi|315503770|ref|YP_004082657.1| dead/deah box helicase domain protein [Micromonospora sp. L5]
 gi|315410389|gb|ADU08506.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5]
          Length = 417

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 126/359 (35%), Positives = 182/359 (50%), Gaps = 5/359 (1%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA  GL+P +V  +   G   P PIQ  TIP  L   DV G  +TG+GKT +F LP+L 
Sbjct: 7   TFAATGLAPALVSELAAQGISAPFPIQAATIPDSLAGRDVLGRGRTGSGKTLAFGLPLLH 66

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
                RAR   P  L+L PTRELAAQV +    Y     L  A ++GG+    Q   L  
Sbjct: 67  RTAGRRARPGRPLALVLVPTRELAAQVTEALAPYAATLGLRCATVVGGLSLTRQAAALRA 126

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           GA+VL+ TPGR+ D  +RG   ++ + I V+DEAD+M DMGF+P +  +   V    Q +
Sbjct: 127 GAEVLVATPGRLHDLIDRGDARLDQVAITVLDEADQMADMGFLPQVTKLLEQVAPGGQRM 186

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT+   + ++   FL +P    V+  ++T   + H  +   A+          L   
Sbjct: 187 LFSATLDRGVDRLVRRFLTDPVTHSVDPGTATVTAMTHHVLHLDAEDK-----PAALAHI 241

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  I+F   K     +   L  +G    A+HG   Q  R +IL  F+ G +  +VA
Sbjct: 242 AAREGRTIVFIATKHRADRVARQLLAKGVRAAALHGGKSQPQRTRILEQFRTGQVTALVA 301

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           +D+AARG+ +  +  V N D P  A++Y+HR GRT RAG  G   TLV  +  + +  +
Sbjct: 302 TDVAARGIHVDGLDLVVNADPPTEAKDYLHRGGRTARAGESGTVVTLVLPDQRRDVARL 360


>gi|170767442|ref|ZP_02901895.1| ATP-dependent RNA helicase SrmB [Escherichia albertii TW07627]
 gi|170123776|gb|EDS92707.1| ATP-dependent RNA helicase SrmB [Escherichia albertii TW07627]
          Length = 444

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 142/421 (33%), Positives = 217/421 (51%), Gaps = 9/421 (2%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILEKGRARVRMP 73
           A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP +  +L+  R +   P
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +      D+++ T GR+
Sbjct: 78  RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT-MTDELQ 192
           L +          +E L++DEADRMLDMGF   I++I     + +QTLLFSAT   D +Q
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
             +E  L++P  +  N  +   + I   +        K        L  Q      I+F 
Sbjct: 198 DFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTAL--LVHLLKQPEATRSIVFV 255

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
            +++ V  L + L + G + C + G + Q  R + +    EG + ++VA+D+AARG+DIP
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
           DV HVFNFD+P   + Y+HRIGRT RAGR G A +LV   D   +  + + IE+ +    
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 375

Query: 373 GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQ 432
            D   L P        Q     K     +      + K+    +K H   ++++ I K +
Sbjct: 376 ID--ELRPKTRAPSEKQSGKPSKKVLAKRAEKKKAKEKEKPRVKKRH---RDTKNIGKRR 430

Query: 433 Q 433
           +
Sbjct: 431 K 431


>gi|2370591|emb|CAA73167.1| translation initiation factor eIF4A I [Xenopus laevis]
          Length = 406

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 198/377 (52%), Gaps = 6/377 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D+ LS  ++  +   G+ KP+ IQ + I   ++ +DV   AQ+GTGKTA+F + +L  
Sbjct: 34  FDDMSLSESLLRGIYAYGFEKPSAIQQRAIMPCIKGYDVIAQAQSGTGKTATFAISILQQ 93

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LER 121
           +E      +    L+L PTRELA Q+       G          IGG    A+ +K    
Sbjct: 94  IELDMKATQA---LVLAPTRELAQQIQKVVMALGDYMGAGCHACIGGTDVRAEVQKLQSE 150

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              +++ TPGR+ D  NR  L    I++ V+DEAD ML  GF   I +I   +    Q +
Sbjct: 151 APHIVVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLSSNAQVV 210

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           L SATM  ++ +V++ F+++P RI V     T E I   ++    +  K   L       
Sbjct: 211 LLSATMPADVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL--YE 268

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
             T+   +IF N ++ V  L   +  + F+V A+HG++DQ+ R  I+  F+ G+ ++++ 
Sbjct: 269 TLTITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLIT 328

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +DL ARG+D+  V  V N+D+P   ENYIHRIGR GR GR G A  +V ++D + +  IE
Sbjct: 329 TDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEDDKRTLKDIE 388

Query: 362 KLIEKKVDWLNGDLSSL 378
                 V+ +  +++ L
Sbjct: 389 TFYNTTVEEMPMNVADL 405


>gi|326779941|ref|ZP_08239206.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|326660274|gb|EGE45120.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 537

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 122/358 (34%), Positives = 184/358 (51%), Gaps = 4/358 (1%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FADL +   ++  +   G  +P PIQ  T+P  L   D+ G  +TG+GKT +F L +L  
Sbjct: 78  FADLDMPAGLLKTLAAQGVTEPFPIQGATLPNSLAGRDILGRGRTGSGKTLAFGLALLAR 137

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
               R   R P  ++L PTRELA QV D    Y    NL +A ++GG+    Q+  L RG
Sbjct: 138 TAGRRGEPRAPLAMVLVPTRELAQQVTDALTPYATAVNLRLATVVGGMSITKQSATLRRG 197

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
           A+VL+ TPGR+ D   RG   ++ + I V+DEAD+M DMGF+P +  +   V    Q +L
Sbjct: 198 AEVLVATPGRLKDLIERGDCRLDEVSITVLDEADQMADMGFMPQVVALLKQVEADGQRML 257

Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
           FSAT+   + ++ + FL +P    V+  +    T+EH  +    +  KK    +      
Sbjct: 258 FSATLDKNIDRLVKMFLTDPVVHSVDPSAGAVTTMEHHVLHVLDETDKKAVATK----IA 313

Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
                 I+F + K+        L   G    A+HG   Q  R + L  FK G +  +VA+
Sbjct: 314 AREGRVIMFVDTKRAADRFAKRLLASGVRAAALHGGRSQPQRNRTLDQFKNGQVTALVAT 373

Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           ++AARG+ + D+  V N D P   ++Y+HR GRT RAG  G   TLV  E+ + +  +
Sbjct: 374 NVAARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPEEKREMTRL 431


>gi|171059675|ref|YP_001792024.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170777120|gb|ACB35259.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 477

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 146/454 (32%), Positives = 220/454 (48%), Gaps = 18/454 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ L L P  +  +   GY   TPIQ  ++PL L  HD+   A+TG+GKTA+F    L
Sbjct: 20  LSFSSLPLPPATLANLQQLGYTAMTPIQAASLPLALAGHDLIAQAKTGSGKTAAFA---L 76

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL-IGGIPFEAQNKKL 119
            +L     R    ++L+L PTRELA QV     +  +  +    L  +GG     Q   L
Sbjct: 77  ALLANLNPRRFAVQSLVLCPTRELAEQVTQEVRRLARAEDHIKVLTLVGGTTMRPQLASL 136

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           E GA ++I TPGRI+DH  RG L ++ +  LV+DEADRMLDMGF   I+ +    P  RQ
Sbjct: 137 EHGAHIVIGTPGRIMDHLERGSLDLSALNTLVLDEADRMLDMGFFDDIKTVIQQCPKERQ 196

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
           TLLFSAT  + + ++S  F++ PK I++    +  +         Y     +      LL
Sbjct: 197 TLLFSATYPEGIARISAAFMRAPKEIKLTEKHAAGKI----RQIFYEVREDERLHAVSLL 252

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
                  + + FCN K+   +L   L  QG+S   +HG+++QR R ++L  F   +  ++
Sbjct: 253 LDHYRPVSTLAFCNTKQQCRDLVQVLRAQGYSALELHGDLEQRDRDQVLIQFANQSCSVL 312

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
           VA+D+AARGLDI  +G V N ++      + HRIGRTGRA   G AF+L + +++  +  
Sbjct: 313 VATDIAARGLDISQLGAVINVEITPDIATHTHRIGRTGRADEEGWAFSLASMDEMGRVGQ 372

Query: 360 IEKLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413
           IE +      W             L PP++ I I      RK    P    G   +   +
Sbjct: 373 IEVMHGFTAQWQPLATLTKTSAEPLLPPMQTIQIL---GGRKEKIRPGDVMGALTKDMGF 429

Query: 414 SS-QKSHIPLKESEKISKLQQDIQENDADSLGFR 446
           +  Q   I + E      + ++I       L   
Sbjct: 430 AGAQIGKINVNEFSTYVAVAREIAPQVERKLAAG 463


>gi|294867179|ref|XP_002764990.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239864870|gb|EEQ97707.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 580

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 107/391 (27%), Positives = 187/391 (47%), Gaps = 15/391 (3%)

Query: 2   DFADLGLSPKVVCAVLDA---GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
            F +      ++  +      G   P+ IQ++  P+     D+ G+A+TG+GKT ++++P
Sbjct: 183 TFEESNFPDYLISTLNQRFPGG--HPSAIQMQGWPVASSGRDLVGVAETGSGKTLAYLMP 240

Query: 59  MLTIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116
            +  +  +    +   P  L+L PTREL+ Q+         +  L +A + GG P   Q 
Sbjct: 241 AIVHIAAQPEVEQGDGPVALVLVPTRELSQQLLAESMLQIGSVPLRIACVYGGQPKRQQE 300

Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176
           ++L    ++L+ TPGR++D    G   +  +  LVIDEAD ML +GF   + +I S +  
Sbjct: 301 RELWTAPELLVATPGRLIDFLQNGATNLKRVTYLVIDEADEMLALGFGRQLDSICSAIRP 360

Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236
            RQTL++SAT   E+Q ++    +           S A   +      + ++        
Sbjct: 361 DRQTLMWSATWPREIQDLARKHCREMPVHINIGSQSLAACHQVTQDFVFLEHPGMKQKEF 420

Query: 237 QLLQSQDTMK--------NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
                               +IFCN K+ V  L   L  QG++   IH + +Q  R  + 
Sbjct: 421 MDNVIPKVWNVLESNGEAKALIFCNTKREVDQLTQLLRSQGYNAVCIHSDKEQSEREWVF 480

Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348
           + +++G ++L+VA++L  RG+DI ++  V N+D+P   E Y+HRIGRT RAG HG + TL
Sbjct: 481 AQYRDGDVRLLVATNLMGRGVDIKNIQFVINYDMPQNVEEYVHRIGRTARAGAHGTSITL 540

Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379
              ++ +H   +  ++ +    +   L  L 
Sbjct: 541 FTAQEGRHAKDLVDILNEAGQNIPEFLLMLK 571


>gi|324113103|gb|EGC07079.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
 gi|325496344|gb|EGC94203.1| ATP-dependent RNA helicase SrmB [Escherichia fergusonii ECD227]
          Length = 444

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 145/431 (33%), Positives = 215/431 (49%), Gaps = 12/431 (2%)

Query: 15  AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILEKGRARVRMP 73
           A+ D G+ +PT IQ   IP  L   DV G A TGTGKTA+++LP +  +L+  R +   P
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77

Query: 74  RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133
           R LIL PTRELA QVAD+  +  K+ +L +A + GG+ +    +      D+++ T GR+
Sbjct: 78  RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT-MTDELQ 192
           L +          +E L++DEADRMLDMGF   I++I     + +QTLLFSAT   D +Q
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197

Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252
             +E  L++P  +  N  +   + I   +        K        L  Q      I+F 
Sbjct: 198 DFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTAL--LVHLLKQPEATRSIVFV 255

Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312
            +++ V  L + L + G + C + G + Q  R + +    EG + ++VA+D+AARG+DIP
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372
           DV HVFNFD+P   + Y+HRIGRT RAGR G A +LV   D   +  + + IE+ +    
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 375

Query: 373 GDLSSLNPPLEKIDIAQHNHARKN------NPIPQKSTGFDRRKKNYSSQKSHIPLKESE 426
            D   L P        Q     K            K     R KK +   K+    ++  
Sbjct: 376 ID--ELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPS 433

Query: 427 KISKLQQDIQE 437
                QQ  +E
Sbjct: 434 GTGVPQQTTEE 444


>gi|239942478|ref|ZP_04694415.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
           15998]
 gi|239988942|ref|ZP_04709606.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
           11379]
 gi|291445934|ref|ZP_06585324.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|291348881|gb|EFE75785.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
          Length = 742

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 143/454 (31%), Positives = 221/454 (48%), Gaps = 16/454 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   +V  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L
Sbjct: 59  VTFGDLGLPEGIVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTL 118

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  GR   + PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LE
Sbjct: 119 AALAGGRTEKKKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALE 178

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVL+ TPGR+ D  NRG   + ++++ V+DEAD+M D+GF+P +  +   VP   Q 
Sbjct: 179 RGVDVLVATPGRLRDIINRGACSLEDVQVAVLDEADQMSDLGFLPEVTELLDQVPAGGQR 238

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM +E+  + + +L NP   EV++      T+ H  +       K          
Sbjct: 239 MLFSATMENEIGTLVKRYLSNPVTHEVDSAQGNVTTMSHHVLVV-----KPKDKAPVTAA 293

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   +     +   L + G    A+HG + Q +R ++L +FK+G +  +V
Sbjct: 294 IAARKGRTIIFVRTQLGADRIAEQLIESGVKADALHGGMTQGARTRVLEDFKKGYVNALV 353

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ +  +  V N D     ++Y+HR GRT RAG+ G   +L      +    I
Sbjct: 354 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGVVVSLALPHQRRQ---I 410

Query: 361 EKLIEKK-VDWLNGDLSS---LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            +L+E   VD     +       P + +I  A+     + +     +   +R   + + Q
Sbjct: 411 FRLMEDAGVDASRHIVQGAGVFEPEVAEITGARSLTEVQADSANNAAKQAEREAADLTKQ 470

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNMP 450
              +      +  +L+++     A +   RG+ P
Sbjct: 471 LERVQ----RRAVELREEADRLVARAARERGDDP 500


>gi|269792122|ref|YP_003317026.1| DEAD/DEAH box helicase domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099757|gb|ACZ18744.1| DEAD/DEAH box helicase domain protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 558

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 131/389 (33%), Positives = 210/389 (53%), Gaps = 9/389 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTI--PLVLQRHDVCGIAQTGTGKTASFVLPML 60
           F    L  +++ A+   G+  P P+Q+  +  P ++   D+   A+TG+GKT +F LP+L
Sbjct: 7   FDQYPLRDELLSALRRKGFEHPMPVQVSMLEDPTLVDG-DLIVQAKTGSGKTLAFALPLL 65

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             +E G      P+ L+L PTRELA Q A  F+  G +  + VA L+GG+  E Q K L 
Sbjct: 66  NRMEFGERS---PKVLVLSPTRELALQTAREFQWLGYDLRIRVASLVGGMDMERQVKALR 122

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            GA V++ TPGR+LDH  RG    + +E LV+DE D MLD+GF   +++I + +    ++
Sbjct: 123 EGAAVVVGTPGRVLDHIRRGTFRADLVESLVLDEGDHMLDLGFKDELEDIMAAMTQVERS 182

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            LFSATM +E+  +++ +L  P++I +   ++  + I       Y   +++       + 
Sbjct: 183 WLFSATMPEEVVTLAKQYLDAPRKISLVEDAAKHDDIVQ---RAYIIPARRRFEGLANVL 239

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +  + GI+FC  K     L   L  +GF   A+HG++ QR R   L N + G  Q++V
Sbjct: 240 LFERPRRGIVFCATKLQTQELAERLCDEGFKASALHGDMTQRERNMALENLRRGRSQILV 299

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARGLDI  V HV  F +P   E +IHR GRTGRAG+ G+   L+   +      +
Sbjct: 300 ATDVAARGLDISGVSHVIQFGLPGCLETFIHRSGRTGRAGQEGRNLILLTAREAGEFRGM 359

Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389
            +    +V+WL    +     L + +I +
Sbjct: 360 IRGTSLEVEWLPAPDAEELESLTRAEIER 388


>gi|182437685|ref|YP_001825404.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178466201|dbj|BAG20721.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 754

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 143/454 (31%), Positives = 221/454 (48%), Gaps = 16/454 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   +V  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L
Sbjct: 73  VTFGDLGLPEGIVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTL 132

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  GR   + PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LE
Sbjct: 133 AALAGGRTEKKKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALE 192

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVL+ TPGR+ D  NRG   + ++++ V+DEAD+M D+GF+P +  +   VP   Q 
Sbjct: 193 RGVDVLVATPGRLRDIINRGACSLEDVQVAVLDEADQMSDLGFLPEVTELLDQVPAGGQR 252

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM +E+  + + +L NP   EV++      T+ H  +       K          
Sbjct: 253 MLFSATMENEIGTLVKRYLSNPVTHEVDSAQGNVTTMSHHVLVV-----KPKDKAPVTAA 307

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   +     +   L + G    A+HG + Q +R ++L +FK+G +  +V
Sbjct: 308 IAARKGRTIIFVRTQLGADRIAEQLIESGVKADALHGGMTQGARTRVLEDFKKGYVNALV 367

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ +  +  V N D     ++Y+HR GRT RAG+ G   +L      +    I
Sbjct: 368 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGVVVSLALPHQRRQ---I 424

Query: 361 EKLIEKK-VDWLNGDLSS---LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            +L+E   VD     +       P + +I  A+     + +     +   +R   + + Q
Sbjct: 425 FRLMEDAGVDASRHIVQGAGVFEPEVAEITGARSLTEVQADSANNAAKQAEREAADLTKQ 484

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNMP 450
              +      +  +L+++     A +   RG+ P
Sbjct: 485 LERVQ----RRAVELREEADRLVARAARERGDDP 514


>gi|86742488|ref|YP_482888.1| DEAD/DEAH box helicase-like protein [Frankia sp. CcI3]
 gi|86569350|gb|ABD13159.1| DEAD/DEAH box helicase-like [Frankia sp. CcI3]
          Length = 649

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 124/364 (34%), Positives = 193/364 (53%), Gaps = 2/364 (0%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA+LG+  + V A+ +AG V   PIQ  T+PL L R+D+ G A+TGTGKT +F +P++ 
Sbjct: 86  TFAELGVRAETVSALTEAGIVHAFPIQELTLPLALARNDIIGQARTGTGKTLAFGVPVVQ 145

Query: 62  ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
            +   +      P+ L++ PTREL  QV  +  + G    L V  + GG  +E Q   L 
Sbjct: 146 TVLAAKEGADGRPQALVVVPTRELCVQVTADVTRAGARRGLRVLSVYGGRAYEPQLSALR 205

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
            G D+++ TPGR+LD   +  L +  +  LV+DEAD MLD+GF+P ++ I S +P  RQT
Sbjct: 206 AGVDIVVGTPGRLLDLARQHVLDLAGVGTLVLDEADEMLDLGFLPDVERIMSQLPTERQT 265

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM   +  ++  F                 T+       +  ++     +   + 
Sbjct: 266 MLFSATMPGPVISLARRF-MKRPVHVRAEQPDEGRTVPTTRQHVFRAHALDKMEVLARVL 324

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   ++F   ++    +   L K+GF+  A+HG++ Q  R + L  F+ G + ++V
Sbjct: 325 QAGGRGLAMVFVRTRRTADKVAEDLAKRGFAAAAVHGDLGQGQREQALRAFRSGKVDVLV 384

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DI  V HV N+  P     Y+HRIGRTGRAG  G A T V  +D+     +
Sbjct: 385 ATDVAARGIDINGVTHVVNYQCPEDENVYLHRIGRTGRAGESGVAITFVDWDDLPRWTLV 444

Query: 361 EKLI 364
            K +
Sbjct: 445 NKAL 448


>gi|148906285|gb|ABR16298.1| unknown [Picea sitchensis]
          Length = 802

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 121/381 (31%), Positives = 192/381 (50%), Gaps = 10/381 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           +D + L LS ++V A+ + G     PIQ   +   L+  D+ G A+TGTGKT +F +P++
Sbjct: 144 LDLSGLNLSQELVEALANRGITHLFPIQRAVLVPALEGRDLIGRAKTGTGKTLAFGIPII 203

Query: 61  TILEKGRARV-------RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113
             L K            R+PR L+L PTRELA QV   F++       + A + GG+ + 
Sbjct: 204 ERLTKDNKENKLLRQSRRLPRVLVLAPTRELAKQVEKEFKESAPFL--STACIYGGVSYV 261

Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173
           +Q   L RG DV++ TPGRI+D  N   L +N ++ LV+DEAD+ML +GF   ++ I   
Sbjct: 262 SQQNALARGVDVVVGTPGRIIDLVNSKSLKLNEVQFLVLDEADQMLAVGFEEDVEIILDN 321

Query: 174 VPFTRQTLLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
           +P  RQ++LFSATM   ++K   ++         V             +       S   
Sbjct: 322 LPAERQSMLFSATMPGWVKKLSRKHLNNPMTIDLVGENEEKLAEGIKLYAVATTTSSNSK 381

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
             +   L +        I   Q K   +          +  A+HG+I Q  R + L+ F+
Sbjct: 382 RSILGDLITVFAKGGKTIVFTQTKRDADEISLGLSSTIACEALHGDISQHQRERTLAGFR 441

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
           EG    +VA+D+AARGLDI +V  V +++ PN  E ++HR GRTGRAG+ G A  +    
Sbjct: 442 EGKFSALVATDVAARGLDITNVDLVIHYEFPNDPETFVHRSGRTGRAGKEGIAILMYPSN 501

Query: 353 DIKHIDAIEKLIEKKVDWLNG 373
             + + ++E  +  + +++N 
Sbjct: 502 GKRKVRSLEHEVGCRFEYINP 522


>gi|320164285|gb|EFW41184.1| ATP-dependent RNA helicase dbp4 [Capsaspora owczarzaki ATCC 30864]
          Length = 963

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 138/469 (29%), Positives = 214/469 (45%), Gaps = 29/469 (6%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           FA+L LS +   A+ D  YVK T IQ  ++P  L   DV G A+TG+GKT +F+LP++  
Sbjct: 199 FAELPLSSRTQAALRDCAYVKLTEIQRVSLPDGLAGRDVLGAAKTGSGKTLAFLLPVVER 258

Query: 63  LEKGRARVRMPRTLI-LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           L + R         I + PTRELA Q+ +   K G  + L   L+IGG   E + +++  
Sbjct: 259 LYRLRWSSEDGIGAIVITPTRELAFQIFEVLRKIGARHELAAGLVIGGKDVEQEKERING 318

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
              ++      +           +N+++LV+DEADR+LDMGF   +  I   +P +RQTL
Sbjct: 319 MNILVCTPGRLLQHMDETPNFDCSNLQMLVLDEADRILDMGFARTLDAILDFLPRSRQTL 378

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSAT T  ++ ++   L +P+   V+  +  +                K   +      
Sbjct: 379 LFSATQTKSVRDLARLSLTSPEYAAVHEHAKHSTPKGLSQSYVVTALPDKL-DILYSFIR 437

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV--CAIHGNIDQRSRMKILSNFKEGTIQLM 299
             T    ++F +  K V  +  +  +    V   A++G   Q  RM I S+F +    ++
Sbjct: 438 THTSSKTLVFLSSCKQVRFVLETFRRLRPGVPLMALYGKQKQMKRMAIYSDFAKKPSAVL 497

Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
            A+D+AARGLD P V  V   D P  A  YIHR+GRT RA + G A  +V   + K +  
Sbjct: 498 FATDIAARGLDFPAVHWVIQVDCPEDASTYIHRVGRTARADKSGNALLMVLPSEEKGM-- 555

Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ-KSTGFDRRKKNYSSQKS 418
           +  L EK++            P+EK +I   N  R ++  P   +      +  Y +QK 
Sbjct: 556 VATLAEKRI------------PIEKREI---NPDRSSSIRPSLAAFCTQEPELKYLAQKY 600

Query: 419 HIPLKESEKISKLQQDIQ------ENDADSLGFRGNMPAFMLPKNRGKL 461
            +    S  +   +Q         E  A SLG  G  P     K   K+
Sbjct: 601 FVSYMRSVFLQPNKQVFDVHALPAEEFALSLGLPGQ-PNIRYLKKVKKV 648


>gi|212539832|ref|XP_002150071.1| ATP dependent RNA helicase (Dbp10), putative [Penicillium marneffei
           ATCC 18224]
 gi|210067370|gb|EEA21462.1| ATP dependent RNA helicase (Dbp10), putative [Penicillium marneffei
           ATCC 18224]
          Length = 948

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 123/408 (30%), Positives = 205/408 (50%), Gaps = 43/408 (10%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+ +++ A+   G+  PTPIQ KTIP+++   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 98  FQAMGLNAQLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIPMIEK 157

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+    +V   R LI+ P+RELA Q     ++ G+  +L   LL+GG   E Q   +   
Sbjct: 158 LKSHSGKVG-VRGLIMSPSRELALQTLKVVKELGRGTDLKAVLLVGGDSLEEQFGLMVGN 216

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I+ +V DEADR+ +MGF   +  I   +P TRQTLL
Sbjct: 217 PDIVIATPGRFLHLKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPATRQTLL 276

Query: 183 FSATMTDELQ------------------------------------------KVSENFLQ 200
           FSAT+   L                                            +  + ++
Sbjct: 277 FSATLPKSLVEFARAGLQDPTLIRLDTEGKISPDLQNAFFTVKTADKEGALLHILHDVIK 336

Query: 201 NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVN 260
            P         S  +  E        +  +  +          T  + IIF   K +V  
Sbjct: 337 IPTGPTGVYFRSNEDDEEEEDGRRPRKRKRFDSNKAGKHTESPTKHSTIIFAATKHHVDY 396

Query: 261 LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNF 320
           +   L + GF+V   +G++DQ +R   +  F+ G   ++V +D+AARG+DIP + +V N+
Sbjct: 397 IASMLREAGFAVSYAYGSLDQTARNIQVQRFRAGATHILVVTDVAARGIDIPILANVINY 456

Query: 321 DVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           D P++ + ++HR+GRT RAG+ G +++LV   D  ++  ++  + +K+
Sbjct: 457 DFPSQPKVFVHRVGRTARAGQKGWSYSLVRDADAPYLLDLQLFLGRKL 504


>gi|302307011|ref|NP_983480.2| ACR078Wp [Ashbya gossypii ATCC 10895]
 gi|299788794|gb|AAS51304.2| ACR078Wp [Ashbya gossypii ATCC 10895]
          Length = 466

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 95/395 (24%), Positives = 184/395 (46%), Gaps = 19/395 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVLPM 59
            F +LGL+P+++  +    + KP+ IQ + +PL+L     ++   +Q+GTGKTA+F L M
Sbjct: 78  SFEELGLAPELLKGLYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 137

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
           L+ ++      +      L P+RELA Q  +  ++ GK   +   L++   P   +  K 
Sbjct: 138 LSRVDVAVPATQAIC---LAPSRELARQTLEVIQEMGKFTKIASQLIV---PDSYEKNKA 191

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
                ++      +     +   L      ++ +  + +   G       +   +P   Q
Sbjct: 192 INAHIIVGTPGTVLDLMRRKMIQLGKVKTFVLDEADNMLDKQGLGDQCIRVKKFLPKDTQ 251

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
            +LFSAT  D +++ +   + N   +E+         I+  F+    +  K   L     
Sbjct: 252 LVLFSATFDDSVREYARRVVPNANSLELQRNEVNVSAIKQLFMDCNDERHKFTVLCDL-- 309

Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
               T+ + IIF   K+    L   L+++G  V  +HG++    R +++ +F+EG  +++
Sbjct: 310 YGLLTIGSSIIFVQTKQTANMLYTELKREGHQVSILHGDLQSADRDRLIGDFREGRSKVL 369

Query: 300 VASDLAARGLDIPDVGHVFNFDVP------NRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
           + +++ ARG+DIP V  V N+D+P           Y+HRIGRTGR GR G A + +  K+
Sbjct: 370 ITTNVLARGIDIPTVSMVVNYDLPMTANGQPDPSTYVHRIGRTGRFGRTGVAISFIHDKK 429

Query: 353 DIKHIDAIEKLIE-KKVDWLN-GDLSSLNPPLEKI 385
             + + AI+      ++  +   D+  +   ++K+
Sbjct: 430 SYETLAAIQSYFGDIQITKVPTDDMDEMEKIVKKV 464


>gi|297193469|ref|ZP_06910867.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151793|gb|EDY62163.2| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 681

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 131/364 (35%), Positives = 189/364 (51%), Gaps = 8/364 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F+DLGL   VV  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L 
Sbjct: 66  TFSDLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLA 125

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L  G    + PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LER
Sbjct: 126 TLAGGHTEKKKPRAIILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALER 185

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181
           G DVL+ TPGR+ D  NRG   + N+ + V+DEAD+M D+GF+P +  +   +P   Q +
Sbjct: 186 GVDVLVATPGRLRDIINRGACSLENVRVAVLDEADQMSDLGFLPEVTELLDQIPAGGQRM 245

Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241
           LFSATM +E+  + + +L +P   EV++      T+ H  +       K           
Sbjct: 246 LFSATMENEISTLVKRYLTDPVTHEVDSAQGNVTTMSHHVLVV-----KPKDKAPVTAAI 300

Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301
                  IIF   +     +   L + G    A+HG + Q +R + L++FKEG +  +VA
Sbjct: 301 AARKGRTIIFVRTQLGADRIAEQLRESGVKADALHGGMTQGARTRTLADFKEGYVNALVA 360

Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361
           +D+AARG+ +  +  V N D     ++Y+HR GRT RAG+ G   +L      +    I 
Sbjct: 361 TDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGVVVSLSLPHQRRQ---IF 417

Query: 362 KLIE 365
           +L+E
Sbjct: 418 RLME 421


>gi|282863532|ref|ZP_06272591.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
 gi|282561867|gb|EFB67410.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
          Length = 790

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 142/454 (31%), Positives = 221/454 (48%), Gaps = 16/454 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FA LGL   +V  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L
Sbjct: 114 VTFASLGLPEGIVRKLAQNGVTAPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTL 173

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  GR   + PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LE
Sbjct: 174 AALAGGRTEKKKPRAIILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALE 233

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVL+ TPGR+ D  NRG   + ++++ V+DEAD+M D+GF+P +  +   +P   Q 
Sbjct: 234 RGVDVLVATPGRLRDIINRGACSLEDVQVAVLDEADQMSDLGFLPEVTELLDQIPGGGQR 293

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM +E+  + + +L NP   EV++      T+ H  +       K          
Sbjct: 294 MLFSATMENEIGTLVKRYLSNPVTHEVDSAQGNVSTMSHHVLVV-----KPKDKAPVTAA 348

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   +     +   L + G    A+HG + Q +R ++L +FK+G +  +V
Sbjct: 349 IAARKGRTIIFVRTQLGADRIAEQLIESGVKADALHGGMTQGARTRVLEDFKKGYVNALV 408

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ +  +  V N D     ++Y+HR GRT RAG+ G   +L      +    I
Sbjct: 409 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGVVVSLALPHQRRQ---I 465

Query: 361 EKLIEKK-VDWLNGDLSS---LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            +L+E   VD     +       P + +I  A+     + +     +   +R   + + Q
Sbjct: 466 FRLMEDAGVDASRHIVQGAGVFEPEVAEITGARSLTEVQADSANNAAKQAEREAADLTKQ 525

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNMP 450
              +      +  +L+++     A +   RG+ P
Sbjct: 526 LERVQ----RRAVELREEADRLVARAARERGDDP 555


>gi|89894520|ref|YP_518007.1| hypothetical protein DSY1774 [Desulfitobacterium hafniense Y51]
 gi|89333968|dbj|BAE83563.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 424

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 122/427 (28%), Positives = 213/427 (49%), Gaps = 15/427 (3%)

Query: 13  VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM 72
           + A+   G V+PT IQ  TIPL+L   DV G ++TG+GKT +++LP+L  +++ +   ++
Sbjct: 1   MEALEKEGIVQPTEIQKLTIPLILSNRDVAGQSETGSGKTLAYLLPVLQKIDRNKRENQV 60

Query: 73  PRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKKLERGADVLICTP 130
              L+L PT ELA QV    +   ++    +T A +IG +    Q +KL+    +++ + 
Sbjct: 61  ---LVLTPTHELALQVQRQIQDLSRHLAATITSAAIIGNVNIARQIEKLKEKPHIIVGSA 117

Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190
           GRIL+   + K+   +++ +V+DEAD++LD   I  ++ +        Q LLFSAT++ +
Sbjct: 118 GRILELIQKRKISAQSLKTIVLDEADQLLDERNIQTVKAVLKTAYKDSQILLFSATLSQD 177

Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGII 250
             + +  FL++P        +  A  +       +    +    L + L         +I
Sbjct: 178 AIEQAAGFLKDPAVQ---RITMKATVVPTIIHQHFMCEQRDKLELLRKLVRHLEPGRALI 234

Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310
           F N+ + +      L   G    AI G   + +R + +++F+ G  QL+VASDLAARGLD
Sbjct: 235 FINKTEEIEKTVERLSYHGLDAVAISGASQKENRRQAMADFRAGKTQLLVASDLAARGLD 294

Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370
           I ++ H+FN D+P   + Y+HR+GRTGRAG+ G A +LV + ++  +  IE  ++  +  
Sbjct: 295 IKNITHIFNLDIPEEPQLYLHRVGRTGRAGQSGVAVSLVTQRELPLLHKIENSLKISIPL 354

Query: 371 LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK-----KNYSSQKSHIPLKES 425
                  +    EK +  Q    R       K+    + K     K  +  K+   +K  
Sbjct: 355 RRLSFGKVIG--EKEEKGQQTRTRTKAGAGTKTETKAKAKPEAKTKTEAKAKTKTGVKAK 412

Query: 426 EKISKLQ 432
            K  K +
Sbjct: 413 TKPHKAK 419


>gi|294884893|gb|ADF47451.1| vasa PlVAS1-like protein [Dugesia japonica]
          Length = 802

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 95/390 (24%), Positives = 153/390 (39%), Gaps = 12/390 (3%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            F  L L   +V  +    Y K TP+Q   IP++  R D+   AQTG+GKTA+F++P++ 
Sbjct: 363 SFTGLNLPDFLVSNINFLRYSKLTPVQKYAIPIIDTRRDLMACAQTGSGKTAAFLIPIIK 422

Query: 62  ILEKGRAR-----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI--GGIPFEA 114
            L +         V  P+ LI+ PTREL  Q+     +  +  N+  A +     +    
Sbjct: 423 SLHENIVDAPASAVAFPKALIMAPTRELCRQIFTAARQLCRGSNVKCAYIYGGIEMNKSR 482

Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174
           +N +      ++      I         L      ++ +    +   GF   +  I    
Sbjct: 483 RNIQSSGCDILVATPGRLIHFLELVWISLRYLKFFILDEADRMLESEGFYESVNKIYVDA 542

Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNP--KRIEVNTPSSTAETIEHCFVATYAQYSKKC 232
             +        +M           L     K                          ++ 
Sbjct: 543 NCSGDDRTIQISMFSATFPNEIQSLARNLLKNYLFLAVGVVGSANTDVKQEIIQTDQREK 602

Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292
                        +  +IF   K+        L   GF    IHG+ +Q  R   L++FK
Sbjct: 603 VNTAIDYIKTIPDEKTLIFVESKRMADFFGIKLGFLGFKATTIHGDREQEQREIALNDFK 662

Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352
            G +  MVA+++AARGLDIP V +V N D+P   + Y+HRIGRTGR G  G+A +    +
Sbjct: 663 SGRVNFMVATNVAARGLDIPKVDNVINIDMPGDIDTYVHRIGRTGRCGNVGRAISFF--D 720

Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPL 382
           D K I A+ + +  K++  N +       L
Sbjct: 721 DTKDI-ALAQPLASKLEEANQECPDWLKAL 749


>gi|284034767|ref|YP_003384698.1| DEAD/DEAH box helicase domain-containing protein [Kribbella flavida
           DSM 17836]
 gi|283814060|gb|ADB35899.1| DEAD/DEAH box helicase domain protein [Kribbella flavida DSM 17836]
          Length = 554

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 121/364 (33%), Positives = 187/364 (51%), Gaps = 7/364 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + FADLGL  ++V A+  AG  KP PIQ  T+P  L   DV G  +TG+GKT +FVLP++
Sbjct: 65  LTFADLGLPAELVTALAAAGVHKPFPIQAATLPDSLAGKDVLGRGRTGSGKTYAFVLPLI 124

Query: 61  TI--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
                   R R   PR LIL PTRELA Q+  +       + L    + GG+    Q   
Sbjct: 125 ARLATSGTRRRPNQPRALILAPTRELATQIQASISPLTDAFGLRTMTVFGGVGHGPQITG 184

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           L +G D+++  PGR+ DH   G   ++ +EI V+DEAD M D+GF+P ++ +    P T 
Sbjct: 185 LRKGVDIVVACPGRLEDHVKAGHAKLDAVEITVLDEADHMADLGFLPAVRRLLEATPATG 244

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q LLFSAT+   +  + + F+++P    V++  S    + H  +           +    
Sbjct: 245 QRLLFSATLDAGVDVLVKRFMRSPVTHSVDSAQSPVAKMTHHVLHVQPDSRLPVLVDLA- 303

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                     ++F   K    +L   L  QG     +HGN+ Q +R + L  F +G+ + 
Sbjct: 304 ----AAPGRTLVFTRTKYGAKSLTKKLIAQGVPAVELHGNLSQGARTRNLEAFSDGSAKT 359

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+D+AARG+ + DV  V + D P   + Y+HR GRT RAG  G   TL+  + ++ + 
Sbjct: 360 LVATDIAARGIHVDDVSLVIHADPPIEHKAYLHRSGRTARAGAEGTVVTLMTDDQVRDVR 419

Query: 359 AIEK 362
            + +
Sbjct: 420 DLTR 423


>gi|323698575|ref|ZP_08110487.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. ND132]
 gi|323458507|gb|EGB14372.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
           ND132]
          Length = 645

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 111/425 (26%), Positives = 190/425 (44%), Gaps = 11/425 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F    L  K+  A   AG+ +  P+Q + IP +L   DV   A+TG+GKT +FVLP++
Sbjct: 22  ITFD--NLPEKLRQACDRAGWDRLMPVQERAIPFLLDNQDVMVQARTGSGKTGAFVLPLM 79

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L+  R      + L++ PTRELA QVA        +    VA+  G    E  +   E
Sbjct: 80  EKLDPSR---HTCQALVMVPTRELAKQVAQEARTLAGDNLRVVAVYGGVGYKEQLDAFRE 136

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
               V+      +     R   L +   ++  +    +    +   ++    L       
Sbjct: 137 GANLVVGTPGRILDHLMRRNLTLDDLRVVIFDEADRMLSVGFYPDMVEVKRYLPRNIDGA 196

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
            +FSAT    + +++E F+  P+ + +++       I H FV   A   ++  +      
Sbjct: 197 YMFSATFPPSVLRLAEEFMVKPEFLSLSSDEENVSAIAHQFVEVPAMGKERKLIKL---I 253

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
             +   + +IFCN K+NV      L + GF    +  ++ Q  R  +++  KEG ++ +V
Sbjct: 254 ELENPTSALIFCNTKRNVEFTAALLSQFGFDAEGLTSDLTQNKREALMARIKEGKLRFLV 313

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+DIP++ HVF  + P   E+Y+HR GRTGRAG  G A TLV       ++ I
Sbjct: 314 ATDVAARGIDIPELSHVFMMEPPEDPESYVHRAGRTGRAGATGTAITLVDVIQRIELERI 373

Query: 361 EKLIEKKVDWL--NGDLSSLNPPLEKIDIAQHNHARK-NNPIPQKSTGFDRRKKNYSSQK 417
               + + + +    D        E++        RK  N   ++ + F    K Y+  +
Sbjct: 374 AARFKIQFEEIKDPTDEDVTAIIGERLTAMLEKKFRKLTNLQKERVSRFLPVAKTYAEHE 433

Query: 418 SHIPL 422
             + L
Sbjct: 434 DSLAL 438


>gi|183229616|ref|XP_657423.2| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|169803121|gb|EAL52039.2| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 499

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 108/382 (28%), Positives = 187/382 (48%), Gaps = 15/382 (3%)

Query: 2   DFADL--GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
           DF      L  + +  + + G+ KPT +Q   IP  L R DV   +QTG+GKT SF++P+
Sbjct: 4   DFEHFQPSLRKETLDTIKEFGFSKPTEVQKVVIPAFLDRKDVIVQSQTGSGKTLSFLIPL 63

Query: 60  LTILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE--AQ 115
             I+++ R     +    +I+ PTRELA Q+ D  + + K++N+T+ LL GGI      +
Sbjct: 64  FEIIKRERESIEKKEVYGIIISPTRELAHQIYDIAKIFCKHFNMTIGLLTGGIDISTLEE 123

Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
             K      V        +      +L  NN+E+L++DE DRM++MGF   +  I   +P
Sbjct: 124 EMKKGANIVVGTAGRIEEVIVNKLFELEWNNVEVLILDEGDRMIEMGFSQSMTRIICHLP 183

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             R+T LFSATM  EL K      +NP +I+++  ++                 K   L+
Sbjct: 184 KQRRTGLFSATMPKELNKFVIAGCRNPYKIQISNDNTLTPISLANEYCIVPYEIKMQTLI 243

Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNL-----CHSLEKQGFSVCAIHGNIDQRSRMKILSN 290
           + L +S+D      +    + + +             +   + +IHG + Q +R K++  
Sbjct: 244 RVLKESKDKKIVVFVLTCDQVDYIYNIIKILHQEGYLKEKEIYSIHGKVKQVNRDKVIKK 303

Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350
           F+E    +++ +D+ ARG+D  ++ ++  +D P   + YIHR+GRT R G  G +   + 
Sbjct: 304 FEESCEAILICTDVLARGMDFDNINYIIQYDPPQDPKTYIHRVGRTARMGSIGHSLIFLG 363

Query: 351 KEDIKHIDAIE----KLIEKKV 368
             +   I  +E    K+IE+ +
Sbjct: 364 PLEKSFILLMEKKNVKIIERTI 385


>gi|110639488|ref|YP_679697.1| inducible ATP-independent RNA helicase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282169|gb|ABG60355.1| inducible ATP-independent RNA helicase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 457

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 118/378 (31%), Positives = 203/378 (53%), Gaps = 7/378 (1%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPM 59
           M F+DLGL+  ++ ++ +     P+ IQ K IP++L    +V G+AQTGTGKTA+F LP+
Sbjct: 1   MTFSDLGLNAALLQSLSENNISSPSEIQQKAIPVILNSTKNVVGVAQTGTGKTAAFGLPV 60

Query: 60  LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKK 118
           L  +     + ++   L+L PTREL  QVA +   + +         + G    E Q KK
Sbjct: 61  LQQINPSLQQTQV---LVLVPTRELGQQVAKDLFVFSRYIVRIHTEAVYGGKKIEEQIKK 117

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           LE    +L+ TPGR+LD   R  + ++N++ L++DEAD ML+MGF+P I  I  +   T 
Sbjct: 118 LETPKHILVATPGRLLDLIARKAVNLSNLKYLILDEADEMLNMGFLPDIDKIMKIAKPTA 177

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           + LLF++T+  EL+ +   +L          P              Y    K      + 
Sbjct: 178 RKLLFTSTLGSELKLIIREYLGTDIEEIRIKPQEYVNRNIEHQYLAYQYGYKLEY--LKA 235

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
              + + + GIIFC  +     L   L      V +++G+++Q  R K++  FK+  I++
Sbjct: 236 FLLKHSNERGIIFCRTQAAAKLLGQQLAGFDIVVGSLYGDLNQYERTKVMHAFKDKRIEV 295

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           ++A+D+AARG+D+ D+ +V ++ +P+    Y++R GRT RAG+ GK+  L+  +++ H D
Sbjct: 296 LIATDIAARGIDVSDLNYVIHYHLPDNEAQYVNRSGRTARAGKKGKSIALLQSDELYHKD 355

Query: 359 AIEKLIEKKVDWLNGDLS 376
             E  +  + + +  D++
Sbjct: 356 DFEDALRIRFEPIKLDIT 373


>gi|291006385|ref|ZP_06564358.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 467

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 136/397 (34%), Positives = 206/397 (51%), Gaps = 15/397 (3%)

Query: 9   SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
           +P++V A+ +AG      IQ  T+PL L+  D+ G A+TGTGKT  F +P+L  L+    
Sbjct: 2   NPEIVRALGEAGIEHTFAIQELTLPLALRGEDLIGQARTGTGKTLGFGVPVLHRLQVPGD 61

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
               P+ L++ PTREL  QVA +    GK+  +    + GG P+E Q + L  G D++I 
Sbjct: 62  GT--PQALVVVPTRELCVQVARDLTDAGKHLGIRTLAVYGGRPYEQQIEALRSGVDLVIG 119

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR+LD   +  L++  +  LV+DEAD MLD+GF+P I+ I  +VP  RQT+LFSATM 
Sbjct: 120 TPGRLLDLAEQQHLVLGKVRALVLDEADEMLDLGFLPDIERILHMVPEQRQTMLFSATMP 179

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
             +  ++  FL+          +      E      Y  ++     L       +     
Sbjct: 180 GPIITLARTFLR-QPTHIRAEQADAGAIHERTKQFVYRAHAMDKTELIARAMQANGRGLS 238

Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           +IF   K+    L   L ++GF+  A+HG++ Q +R + L  F+ G + ++VA+D+AARG
Sbjct: 239 MIFTRTKRTAQKLSDELTERGFAAAAVHGDLGQGAREQALRAFRSGKVDILVATDVAARG 298

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           +D+  V HV N   P+  + Y+HRIGRTGRAGR G A TLV  ++      I   +    
Sbjct: 299 IDVGGVTHVVNLQCPDDEKTYVHRIGRTGRAGREGVAITLVDWDEEPRWKMISDTLGL-- 356

Query: 369 DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
                       P+E    + H  A  +  IP  +TG
Sbjct: 357 --------DKPEPVETYSTSAHLFA--DLDIPSDATG 383


>gi|134097656|ref|YP_001103317.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133910279|emb|CAM00392.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 496

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 136/397 (34%), Positives = 206/397 (51%), Gaps = 15/397 (3%)

Query: 9   SPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
           +P++V A+ +AG      IQ  T+PL L+  D+ G A+TGTGKT  F +P+L  L+    
Sbjct: 2   NPEIVRALGEAGIEHTFAIQELTLPLALRGEDLIGQARTGTGKTLGFGVPVLHRLQVPGD 61

Query: 69  RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128
               P+ L++ PTREL  QVA +    GK+  +    + GG P+E Q + L  G D++I 
Sbjct: 62  GT--PQALVVVPTRELCVQVARDLTDAGKHLGIRTLAVYGGRPYEQQIEALRSGVDLVIG 119

Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188
           TPGR+LD   +  L++  +  LV+DEAD MLD+GF+P I+ I  +VP  RQT+LFSATM 
Sbjct: 120 TPGRLLDLAEQQHLVLGKVRALVLDEADEMLDLGFLPDIERILHMVPEQRQTMLFSATMP 179

Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
             +  ++  FL+          +      E      Y  ++     L       +     
Sbjct: 180 GPIITLARTFLR-QPTHIRAEQADAGAIHERTKQFVYRAHAMDKTELIARAMQANGRGLS 238

Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308
           +IF   K+    L   L ++GF+  A+HG++ Q +R + L  F+ G + ++VA+D+AARG
Sbjct: 239 MIFTRTKRTAQKLSDELTERGFAAAAVHGDLGQGAREQALRAFRSGKVDILVATDVAARG 298

Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
           +D+  V HV N   P+  + Y+HRIGRTGRAGR G A TLV  ++      I   +    
Sbjct: 299 IDVGGVTHVVNLQCPDDEKTYVHRIGRTGRAGREGVAITLVDWDEEPRWKMISDTLGL-- 356

Query: 369 DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405
                       P+E    + H  A  +  IP  +TG
Sbjct: 357 --------DKPEPVETYSTSAHLFA--DLDIPSDATG 383


>gi|302416733|ref|XP_003006198.1| ATP-dependent RNA helicase ded1 [Verticillium albo-atrum VaMs.102]
 gi|261355614|gb|EEY18042.1| ATP-dependent RNA helicase ded1 [Verticillium albo-atrum VaMs.102]
          Length = 676

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 117/397 (29%), Positives = 187/397 (47%), Gaps = 45/397 (11%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F +  L   ++  +  A Y  PTP+Q  +IP+V+   D+   AQTG+GKT  F+ P+L
Sbjct: 203 LTFTNPPLDDHLISNIGLAHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPIL 262

Query: 61  TILE---------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105
           +                   GR R   P +LIL PTREL +Q+ D   K+     +   +
Sbjct: 263 SQAFINGPSPVPANAAGGSFGRQRKAYPTSLILAPTRELVSQIYDESRKFAYRSWVRPCV 322

Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165
           + G     +Q +++                           ++ LV+DEADRMLDMGF P
Sbjct: 323 VYGVADIGSQLRQI-----------------------ERETLKYLVLDEADRMLDMGFEP 359

Query: 166 YIQNIT----SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221
            I+ I           RQTL+FSAT   ++Q ++ +FL++   + V    ST+E I    
Sbjct: 360 QIRRIVEGEDMPGVQNRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKV 419

Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
                   +        +         +IF   K+   +L   L  Q F   +IHG+  Q
Sbjct: 420 EYVEDVDKRSV---LLDILHTHGAGLTLIFVETKRMADSLSDFLINQSFPATSIHGDRTQ 476

Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
           R R + L  F+ G   ++VA+ +AARGLDIP+V HV N+D+P   ++Y+HRIGRTGRAG 
Sbjct: 477 RERERALEFFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGN 536

Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
            G +     + +   +  + +L+++    +   L ++
Sbjct: 537 TGHSTAFFNRGNRGVVRELLELLKEANQEVPQFLETI 573


>gi|189188996|ref|XP_001930837.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187972443|gb|EDU39942.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 1165

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 122/388 (31%), Positives = 185/388 (47%), Gaps = 11/388 (2%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            +A +GL    +       Y KPT IQ + IP+     D+ G+A+TG+GKT +F +PM+ 
Sbjct: 524 KWAQMGLLQATMDVFTQVRYEKPTAIQSQAIPIAESGRDLIGVAKTGSGKTLAFGIPMIR 583

Query: 62  I--LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119
               ++       P  LIL PTREL+ Q+    + +     +T+    GG P   Q   L
Sbjct: 584 HILDQRPLKPSDGPIGLILAPTRELSLQIVHELKPFLAASGITIKCAYGGQPISEQIAML 643

Query: 120 ERGADVLICTPGRILDHFNRGKL----LMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175
           +RG   ++C     L                I  +V+DEADRM DMGF P +  I + V 
Sbjct: 644 KRGGIHILCATAGRLIDLISCNSGRVLSFKRITYVVLDEADRMFDMGFEPQVMKILANVR 703

Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235
             RQT+LFSATM   +  +++  L++P  I +   S  A  I          Y KK    
Sbjct: 704 PDRQTILFSATMPKNMHALAKKALKDPVEIIIGGKSKVAAEITQIISVVPPSYDKKINNT 763

Query: 236 QQL----LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291
                      +  +  I    Q+     L    + + FSV  IHG  DQ  R + +S+F
Sbjct: 764 LLHLGRLFDEDENAQVLIFTERQETAEDLLSKLYKAKYFSVNTIHGAKDQTDRNEAISDF 823

Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-A 350
           K+G + +++A+ +AARGLD+P +  VFNFD P   E+Y+HR GRTGRAG  G A TL+  
Sbjct: 824 KQGVLSILIATSVAARGLDVPGLAMVFNFDCPTHLEDYVHRCGRTGRAGNKGTAITLIEN 883

Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSL 378
               +    I K +++    +  ++  +
Sbjct: 884 PGQERFAVHIAKALKESGTEVPEEVQQM 911


>gi|146322734|ref|XP_749257.2| ATP dependent RNA helicase (Dbp5) [Aspergillus fumigatus Af293]
 gi|148841143|sp|Q4WIN6|DBP5_ASPFU RecName: Full=ATP-dependent RNA helicase dbp5
 gi|129556776|gb|EAL87219.2| ATP dependent RNA helicase (Dbp5), putative [Aspergillus fumigatus
           Af293]
 gi|159128671|gb|EDP53785.1| ATP dependent RNA helicase (Dbp5), putative [Aspergillus fumigatus
           A1163]
          Length = 489

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 96/399 (24%), Positives = 182/399 (45%), Gaps = 19/399 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR--HDVCGIAQTGTGKTASFVL-P 58
           +F DLGL P+++  +    + KP+ IQ + +PL+L     ++ G +Q+GTGKTA+FVL  
Sbjct: 78  NFEDLGLDPRILKGLSSMNFRKPSKIQERALPLLLNNPPKNLVGQSQSGTGKTAAFVLNA 137

Query: 59  MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           +  +        + P+ LIL PTRELA Q+    +  G+  +  +              K
Sbjct: 138 LSRVDLSTEQMQKTPQALILAPTRELARQILGVVQVMGQFVDGLIIGAAVPTDR-DSRPK 196

Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
               + V+            R  +      +++ +  + +   G       + +L+P   
Sbjct: 197 RLECSIVVGTPGTVGDMIKRRTFIPNKLKVLVLDEADNMLDQQGLGDQCIRVKALLPRDI 256

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           Q +LFSAT  + + + +  F  N   I +     T E I+  ++       K   L+Q  
Sbjct: 257 QVVLFSATFPEHVHQYASKFAPNANEITLQHEELTVEGIKQLYLDCADGEDKYRTLVQL- 315

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
                T+ + IIF   +     +   +  +G +V ++ G  D   R  I+  F+ G  ++
Sbjct: 316 -YGLLTVGSSIIFVQTRAAAQEIERRMTAEGHTVVSLTGERDPSVRDAIIDQFRRGEAKV 374

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPN-----------RAENYIHRIGRTGRAGRHGKAFT 347
           ++A+++ ARG+D+  V  V N+D+P              + Y+HRIGRTGR GR G + +
Sbjct: 375 LIATNVLARGIDVSTVSMVINYDIPELHQPNVPGRQADFQTYLHRIGRTGRFGRVGVSIS 434

Query: 348 LVA-KEDIKHIDAIEKLIEKKVDWLN-GDLSSLNPPLEK 384
            V+ +E+ + ++ I+     ++  ++  D   +   ++K
Sbjct: 435 FVSNREEWEMLNQIQTYFNCEIQRVDTKDWDEVEDIIKK 473


>gi|327353326|gb|EGE82183.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 945

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 127/401 (31%), Positives = 204/401 (50%), Gaps = 36/401 (8%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F  +GL+  ++ A+   G+  PTPIQ KTIPL+L   DV G+A+TG+GKTA+FV+PM+  
Sbjct: 88  FQSMGLNATLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 147

Query: 63  LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
           L+   A+    R LIL P+RELA Q     ++ G+  +L   LL+GG   E Q + +   
Sbjct: 148 LKNHSAKFGS-RALILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMAGN 206

Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
            D++I TPGR L       L +++I  +V DEADR+ +MGF   +  I   +P +RQTLL
Sbjct: 207 PDIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPSSRQTLL 266

Query: 183 FSATMTDELQKVSE-----------------------------------NFLQNPKRIEV 207
           FSAT+   L + +                                      L     +  
Sbjct: 267 FSATLPKSLVEFARAGLQEPTLIRLDAESKISPDLQNAFFTVKSSEKEGALLHLLHEVIK 326

Query: 208 NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
                T         A   +  K+        +   T  + IIF   K +V  L   L  
Sbjct: 327 IPTGETEAHKRAKEEAKNPKKRKRSEFASNSHKESPTEHSTIIFTATKHHVDYLVSILRI 386

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
            GF+V   +G++DQ +R   + NF+ G   ++V +D+AARG+DIP + +V N+D P++A+
Sbjct: 387 SGFAVSYAYGSLDQTARKIEVQNFRSGITHILVVTDVAARGIDIPILFNVINYDFPSQAK 446

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368
            ++HR+GRT RAG+ G +++L+ + D  ++  ++  + + +
Sbjct: 447 IFVHRVGRTARAGKTGWSYSLIRESDAPYLLDLQLFLGRPL 487


>gi|156845404|ref|XP_001645593.1| hypothetical protein Kpol_1033p40 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380615|sp|A7TJ36|DBP3_VANPO RecName: Full=ATP-dependent RNA helicase DBP3
 gi|156116258|gb|EDO17735.1| hypothetical protein Kpol_1033p40 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 530

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 107/411 (26%), Positives = 191/411 (46%), Gaps = 9/411 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F+ + L  ++   +    + KPTPIQ  + P +L   DV G+A+TG+GKT +F +P +
Sbjct: 117 LSFSHISLDSRIQAEISK--FPKPTPIQAVSWPYLLAGKDVIGVAETGSGKTFAFGVPAI 174

Query: 61  TILEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
             +      +      + LI+ PTRELA+Q+ DN         L    + GG+P + Q  
Sbjct: 175 NNILTKSGSKPGKNGIQVLIISPTRELASQIYDNLVILTDKVGLECCCVYGGVPKDEQRT 234

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           +L+R   V+      +         L N   +++ +    +           I       
Sbjct: 235 QLKRSQVVVATPGRLLDLIQEGAANLSNVNYLVLDEADRMLEKGFEEDIKNIIRETKSTG 294

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV----ATYAQYSKKCA 233
           RQTL+F+AT   E+++++  F+ +P ++ +      +       +      + +  K   
Sbjct: 295 RQTLMFTATWPKEVRELASTFMNSPIKVSIGNTDELSANKRITQIVEVIDPFKKERKLLE 354

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           LL++           +IF   KK    +  +L   G+ V AIHG++ Q+ R   L  FK 
Sbjct: 355 LLKKYQSGSKKDDKVLIFALYKKEAARVERNLNYNGYKVSAIHGDLSQQQRTNALDEFKT 414

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353
           G   +++A+D+AARGLDIP+V  V N   P   E+Y+HRIGRTGRAG+ G A TL  +++
Sbjct: 415 GRSSILLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGKTGTAHTLFTEQE 474

Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404
                ++  ++      +  +L       +K + + +    K+  + +K+ 
Sbjct: 475 KHLAGSLVNVLNGAGQPVPEELKKFGTHTKKKEHSAYGAFYKDVDMTKKAK 525


>gi|31794389|ref|NP_856882.1| ATP-dependent RNA helicase RhlE [Mycobacterium bovis AF2122/97]
 gi|31619985|emb|CAD95329.1| PROBABLE ATP-DEPENDENT RNA HELICASE RHLE [Mycobacterium bovis
           AF2122/97]
          Length = 527

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 145/381 (38%), Positives = 211/381 (55%), Gaps = 18/381 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FA LG   ++V A+ + G  +P  IQ  T+PL L   DV G A+TG GKT +F +P+L 
Sbjct: 11  TFAKLGARDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQ 70

Query: 62  ILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKN--------------YNLTVA 104
            +  G         PR L++ PTREL  QV D+    GK                 L+V 
Sbjct: 71  RITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVV 130

Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164
            + GG P+E Q + L  GADV++ TPGR+LD   +G L +  + +LV+DEAD MLD+GF+
Sbjct: 131 SIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFL 190

Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224
           P I+ I   +P  RQ++LFSATM D +  ++  F+  P  I    P S+A          
Sbjct: 191 PDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVY 250

Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284
            A    K  L+ ++LQ++D     I     K+    +   L ++GF+V A+HG++ Q +R
Sbjct: 251 RAHALDKVELVSRVLQARDRGATMIFT-RTKRTAQKVADELTERGFAVGAVHGDLGQLAR 309

Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344
            K L  F+ G I ++VA+D+AARG+DI DV HV N+  P   + Y+HRIGRTGRAGR G 
Sbjct: 310 EKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGV 369

Query: 345 AFTLVAKEDIKHIDAIEKLIE 365
           A TLV  +++     I++ + 
Sbjct: 370 AVTLVDWDELPRWSMIDQALG 390


>gi|70984615|ref|XP_747814.1| ATP dependent RNA helicase (Sub2) [Aspergillus fumigatus Af293]
 gi|74667372|sp|Q4WCW2|SUB2_ASPFU RecName: Full=ATP-dependent RNA helicase sub2
 gi|66845441|gb|EAL85776.1| ATP dependent RNA helicase (Sub2), putative [Aspergillus fumigatus
           Af293]
 gi|159122596|gb|EDP47717.1| ATP dependent RNA helicase (Sub2), putative [Aspergillus fumigatus
           A1163]
          Length = 448

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 98/380 (25%), Positives = 164/380 (43%), Gaps = 12/380 (3%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F D  L  +++ A+ D G+  P+ +Q   IP  +   DV   A++G GKTA FVL  L  
Sbjct: 60  FRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQ 119

Query: 63  LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           LE       +       E   ++  + A   +                          E 
Sbjct: 120 LEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKES 179

Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM--------GFIPYIQNITSL 173
             ++++ TPGR+       KL + N++  V+DE D+MLD              +Q I   
Sbjct: 180 YPNIVVGTPGRLNALVREKKLSLRNVKAFVLDECDKMLDQIGKQAQIAHMRRDVQEIFRA 239

Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233
            P  +Q ++FSAT++ E++ + + F++NP  + V+  +         +    ++  K   
Sbjct: 240 TPADKQVMMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSESEKNRK 299

Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293
           L +            IIF         L   L +  F   A+H  + Q  R+K    FKE
Sbjct: 300 LNEL--LDSLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKE 357

Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKE 352
              ++ VA+D+  RG+DI  +    N+D+P  A++Y+HR+GR GR G  G + + V ++E
Sbjct: 358 FNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSSEE 417

Query: 353 DIKHIDAIEKLIEKKVDWLN 372
           D K +  IEK  E  +    
Sbjct: 418 DEKVLKEIEKRFEVALPEYP 437


>gi|326778321|ref|ZP_08237586.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|326658654|gb|EGE43500.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 753

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 142/454 (31%), Positives = 220/454 (48%), Gaps = 16/454 (3%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
           + F DLGL   +V  +   G   P PIQ  TIP  L   D+ G  +TG+GKT SF LP L
Sbjct: 77  VTFGDLGLPEGIVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTL 136

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
             L  GR   + PR +IL PTRELA QVAD  + YG    L + ++ GG     Q   LE
Sbjct: 137 AALAGGRTEKKKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALE 196

Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
           RG DVL+ TPGR+ D  NRG   + ++++ V+DEAD+M D+GF+P +  +   VP   Q 
Sbjct: 197 RGVDVLVATPGRLRDIINRGACSLEDVQVAVLDEADQMSDLGFLPEVTELLDQVPAGGQR 256

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
           +LFSATM +E+  + + +L  P   EV++      T+ H  +       K          
Sbjct: 257 MLFSATMENEIGTLVKRYLSTPVTHEVDSAQGNVTTMSHHVLVV-----KPKDKAPVTAA 311

Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
                   IIF   +     +   L + G    A+HG + Q +R ++L +FK+G +  +V
Sbjct: 312 IAARKGRTIIFVRTQLGADRIAEQLIESGVKADALHGGMTQGARTRVLEDFKKGYVNALV 371

Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
           A+D+AARG+ +  +  V N D     ++Y+HR GRT RAG+ G   +L      +    I
Sbjct: 372 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGVVVSLALPHQRRQ---I 428

Query: 361 EKLIEKK-VDWLNGDLSS---LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
            +L+E   VD     +       P + +I  A+     + +     +   +R   + + Q
Sbjct: 429 FRLMEDAGVDASRHIVQGAGVFEPEVAEITGARSLTEVQADSANNAAKQAEREAADLTKQ 488

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNMP 450
              +      +  +L+++     A +   RG+ P
Sbjct: 489 LERVQ----RRAVELREEADRLVARAARERGDDP 518


>gi|302833349|ref|XP_002948238.1| hypothetical protein VOLCADRAFT_80160 [Volvox carteri f.
           nagariensis]
 gi|300266458|gb|EFJ50645.1| hypothetical protein VOLCADRAFT_80160 [Volvox carteri f.
           nagariensis]
          Length = 836

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 142/469 (30%), Positives = 233/469 (49%), Gaps = 23/469 (4%)

Query: 2   DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
            FADL LS  ++ AV   GY  PTPIQ   IPL L   D+CG A TG+GKTA+F LP L 
Sbjct: 175 SFADLNLSRPLLKAVEALGYKTPTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPFLE 234

Query: 62  ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
            L      +     L+L PTRELA Q+    EK  +  ++TVAL++GG+    Q   L +
Sbjct: 235 RLLHRPRGLAATYVLVLTPTRELAVQIHSMIEKLAQFTDVTVALIVGGLSLSVQAATLRK 294

Query: 122 GADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
             +V++ TPGR++DH  N   + + ++ +LV+DEADR+L+MGF   +  +    P  RQT
Sbjct: 295 LPEVVVATPGRLIDHLRNSQSVGLEDLAVLVLDEADRLLEMGFRDEVMEVVRCAPKKRQT 354

Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS---KKCALLQQ 237
           +LFSAT +D+++ +    L+ P R+  +   +  + +    V      +   K+   +  
Sbjct: 355 MLFSATFSDQVRDLVSLSLKQPVRLAADAARAAPKLLTQEIVRLKGPAAAATKEAVCVAL 414

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
             +S  + +  +    +++           +      +HGN+ Q +R++ L +F+ G   
Sbjct: 415 CSRSFSSGRTIVFCSTKQRAHRLKILFGLAKLPPAAELHGNMSQTARLESLESFRRGDTA 474

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357
            ++A+D+AARGLDI  V  V N+D P + E Y+HRIGRT RAG  G A TLV   D   +
Sbjct: 475 YLLATDVAARGLDIQGVEVVVNYDAPRKLETYLHRIGRTARAGAAGVAVTLVEDGDRPLL 534

Query: 358 DAIEKLIEKKVDWLNGDL---SSLNPPLEKIDIAQHNHARKNNPI----PQKSTGFDRRK 410
             + + +        G +     L PP + +   Q    R  + +     ++    D RK
Sbjct: 535 KELTRRVGGAGGGGGGGVTLRQRLVPP-QAVAQWQGRIERMESDVAAILAEERQEADLRK 593

Query: 411 KNYSSQKSHIPLKESEKI-----------SKLQQDIQENDADSLGFRGN 448
               + K+   L+  E+I            + ++++++  A +    G+
Sbjct: 594 AEMEANKASNMLEHEEEIMARPKRTWFVSDRQKKELKKRTAAAAASGGH 642


>gi|289677204|ref|ZP_06498094.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Pseudomonas syringae pv. syringae FF5]
          Length = 379

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 136/360 (37%), Positives = 220/360 (61%), Gaps = 9/360 (2%)

Query: 29  IKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQV 88
            ++IP+++  HD+ G AQTGTGKTA+F LP+L  ++  +     P+ LIL PTRELA QV
Sbjct: 1   QQSIPIIMAGHDMIGQAQTGTGKTAAFALPILHRIDPSKRE---PQALILAPTRELALQV 57

Query: 89  ADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNI 147
           A  FE Y K    +TV  + GG P   Q K +  GA +++ TPGR+ DH  R + ++  +
Sbjct: 58  ATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQIVVATPGRLCDHLRRDEKVLATV 117

Query: 148 EILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV 207
             LV+DEAD ML +GF+  ++ I   +P T+QT+LFSAT+   ++ ++E  L++PK +++
Sbjct: 118 NHLVLDEADEMLKLGFMDDLEVIFKAMPETKQTVLFSATLPQSIRAIAERHLRDPKHVKI 177

Query: 208 NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267
            T + T   IE   +  +A       L    ++  D +   I+F   K+  ++L  +LE 
Sbjct: 178 QTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFDAL---IMFVRTKQATLDLASALEA 234

Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327
           +G+   A++G+I Q  R +++ + K+G + ++VA+D+AARGLD+P + HVFN D+P   E
Sbjct: 235 KGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAARGLDVPRITHVFNVDMPYDPE 294

Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW--LNGDLSSLNPPLEKI 385
           +Y+HRIGRTGRAGR G+A  LV   + + +  IE++  +KV    L    + L+  ++K+
Sbjct: 295 SYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQKVAEVRLPDAQAVLDARIKKL 354


>gi|17505370|ref|NP_492779.1| hypothetical protein B0511.6 [Caenorhabditis elegans]
 gi|15375231|gb|AAC17654.2| Hypothetical protein B0511.6 [Caenorhabditis elegans]
          Length = 544

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 116/408 (28%), Positives = 202/408 (49%), Gaps = 8/408 (1%)

Query: 2   DFADL--GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59
            FA L   ++  ++ AV   G+   T IQ K+I  +L+  DV   A+TG+GKT +F+LP 
Sbjct: 67  TFASLEGKVNANLLKAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPA 126

Query: 60  LTILEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
           + +L K   +       +I+ PTREL+ Q      +  +  NLT  L++GG    A+  K
Sbjct: 127 IELLHKLNWKQHNGTGVIIVSPTRELSMQTYGVLSELLEGSNLTYGLVMGGSNRSAEKDK 186

Query: 119 LERGADVLICTPGR-ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
           L +G  +L+ TPGR +    N    L+ N++ L+IDEADR+LD+GF   +Q +   +P  
Sbjct: 187 LAKGVSILVATPGRLLDHLQNTDNFLVRNMKCLIIDEADRILDIGFEIEMQQVLRHLPKQ 246

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
           RQ++LFSAT + ++ ++ +  L +          +   T+E          S K  LL  
Sbjct: 247 RQSMLFSATHSPKVDELVKLALHSNPVRVSVHEKAEEATVEGLQQGYIVAPSDKRLLLLF 306

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
               ++  K  ++F +   +V      L        +IHG   Q+ R      F +    
Sbjct: 307 TFLKKNKTKKVMVFFSSCNSVKFHHELLNYIDIPCMSIHGKQKQQKRTTTFFQFCQAETG 366

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA-GRHGKAFTLVAKEDIKH 356
           +++ +D+AARGLDIP V  +  +D  +    YIHR+GRT R     GKA  ++  E++  
Sbjct: 367 ILLCTDVAARGLDIPAVDWIVQYDPTDEPREYIHRVGRTARGTNGSGKALLVLRPEELGF 426

Query: 357 IDAIE--KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402
           +  ++  K+   + ++    ++++   LE + I+++ +  K+     K
Sbjct: 427 LRYLKAAKVTLNEFEFSWSKVANIQSQLENL-ISKNYYLNKSAKEAYK 473


>gi|221128053|ref|XP_002155499.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
 gi|260222669|emb|CBA32460.1| Putative ATP-dependent RNA helicase rhlE [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 415

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 112/366 (30%), Positives = 176/366 (48%), Gaps = 8/366 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59
           M F+ LGL+P +  A++   +  PTP+Q   IP  +   DV   AQTG+GKTA+F L  +
Sbjct: 1   MPFSSLGLTPALAAAMVQQQFSTPTPVQTGAIPPAVAGRDVLVCAQTGSGKTAAFALAVL 60

Query: 60  LTILEKGRARVRMPRTLILEPTRE--LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117
                   +  R P+ L+L PTRE  +      +           ++++ GG+    Q  
Sbjct: 61  QRWTPPAASGARRPQALVLVPTRELAVQVGGVLSTLARAAGLPAKISVVFGGVSINPQLM 120

Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177
            L  G D+++ T GR+LD  +   L + +I  LV+DEADRMLD+GF   +  I +L+P  
Sbjct: 121 ALRGGTDIVVATTGRLLDLVDHNALQLQHIRCLVLDEADRMLDLGFAEELDRIDALLPKQ 180

Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237
            Q+LLFSAT +  +++      ++  R  +       E                      
Sbjct: 181 HQSLLFSATYSAGVRQ----LAESRLREPLEITIKQEEQAAPDITQRAITVDASRRTQLL 236

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLC-HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
                      ++     K    +    L + G      H  + Q  R ++L++FK   +
Sbjct: 237 RHLVVQEAWPRVLVFVATKYAAEMVADKLRRAGLQAEPFHAQLSQGKRTQVLADFKASVV 296

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
           Q++VA+D+AARG+DI  +  V NFD+P  A +Y+HRIGRT RAG+ G A + V+ +   H
Sbjct: 297 QVVVATDVAARGVDIAGLPVVVNFDLPRSATDYVHRIGRTARAGQAGMAVSFVSADTAAH 356

Query: 357 IDAIEK 362
              IEK
Sbjct: 357 FALIEK 362


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.311   0.0941    0.243 

Lambda     K      H
   0.267   0.0294    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,501,783,435
Number of Sequences: 14124377
Number of extensions: 274188038
Number of successful extensions: 1190336
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 44750
Number of HSP's successfully gapped in prelim test: 8426
Number of HSP's that attempted gapping in prelim test: 1050567
Number of HSP's gapped (non-prelim): 73245
length of query: 465
length of database: 4,842,793,630
effective HSP length: 143
effective length of query: 322
effective length of database: 2,823,007,719
effective search space: 909008485518
effective search space used: 909008485518
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 82 (36.7 bits)